sample chr start end reference alt gene effect Amino_Acid_Change DNA_VAF SIFT PolyPhen TCGA-3M-AB46-01 10 101560185 101560185 G C ABCC2 Missense_Mutation p.W358C 0.36 deleterious(0) probably_damaging(1) TCGA-3M-AB46-01 10 13264119 13264119 T G UCMA Missense_Mutation p.N134T 0.36 deleterious(0) possibly_damaging(0.86) TCGA-3M-AB46-01 10 17737155 17737155 G A STAM Missense_Mutation p.V215I 0.43 deleterious(0) probably_damaging(0.998) TCGA-3M-AB46-01 10 43693490 43693490 G A RASGEF1A Missense_Mutation p.H396Y 0.08 tolerated(0.08) benign(0.149) TCGA-3M-AB46-01 10 46321916 46321916 G A AGAP4 Missense_Mutation p.S480L 0.43 deleterious(0.01) probably_damaging(0.992) TCGA-3M-AB46-01 10 51225543 51225543 G A AGAP8 Missense_Mutation p.S480L 0.47 deleterious(0.01) benign(0.267) TCGA-3M-AB46-01 10 52576033 52576033 C G A1CF Missense_Mutation p.D300H 0.17 deleterious(0) possibly_damaging(0.84) TCGA-3M-AB46-01 10 71021034 71021034 C T HKDC1 Silent p.L786L 0.25 TCGA-3M-AB46-01 10 75283423 75283423 T - USP54 Frame_Shift_Del p.K760Nfs*6 0.40 TCGA-3M-AB46-01 10 89692887 89692887 G C PTEN Missense_Mutation p.C124S 0.53 deleterious(0) probably_damaging(0.998) TCGA-3M-AB46-01 10 95110962 95110981 CAGTGAGCTGGACCACAGGC - MYOF Frame_Shift_Del p.R1298Sfs*3 0.36 TCGA-3M-AB46-01 11 10789498 10789498 G C CTR9 Missense_Mutation p.W611S 0.22 deleterious(0.04) benign(0.137) TCGA-3M-AB46-01 11 111754677 111754677 T G C11orf1 3'UTR 0.30 TCGA-3M-AB46-01 11 118967870 118967870 C T DPAGT1 Silent p.L381L 0.11 TCGA-3M-AB46-01 11 14913711 14913711 A C CYP2R1 Missense_Mutation p.L14R 0.39 deleterious(0) unknown(0) TCGA-3M-AB46-01 11 1580170 1580170 G T DUSP8 Silent p.T162T 0.43 TCGA-3M-AB46-01 11 62549379 62549390 ACTTGCAGACGA - TAF6L In_Frame_Del p.L183_N186del 0.23 TCGA-3M-AB46-01 11 65408779 65408785 TCCGAGG - SIPA1 Frame_Shift_Del p.P130Lfs*44 0.39 TCGA-3M-AB46-01 11 6661679 6661679 G A DCHS1 Missense_Mutation p.S389F 0.38 tolerated(0.14) probably_damaging(1) TCGA-3M-AB46-01 11 78516529 78516529 T G TENM4 Missense_Mutation p.M663L 0.29 tolerated(1) benign(0) TCGA-3M-AB46-01 11 82921461 82921461 G A ANKRD42 Silent p.V122V 0.05 TCGA-3M-AB46-01 11 82921462 82921462 G T ANKRD42 Splice_Site p.X122_splice 0.05 TCGA-3M-AB46-01 11 9005494 9005494 T C NRIP3 Missense_Mutation p.H213R 0.47 tolerated(0.11) benign(0.001) TCGA-3M-AB46-01 11 9445412 9445412 G A IPO7 Missense_Mutation p.R377H 0.38 deleterious(0) benign(0.444) TCGA-3M-AB46-01 12 104381064 104381064 T G TDG 3'UTR 0.38 TCGA-3M-AB46-01 12 112467364 112467364 G C NAA25 Missense_Mutation p.L964V 0.06 tolerated(0.24) unknown(0) TCGA-3M-AB46-01 12 112630898 112630898 G C HECTD4 Missense_Mutation p.S2872C 0.41 probably_damaging(0.992) TCGA-3M-AB46-01 12 123186561 123186561 C G HCAR2 3'UTR 0.29 TCGA-3M-AB46-01 12 133418016 133418016 G T CHFR 3'UTR 0.52 TCGA-3M-AB46-01 12 19408094 19408094 G T PLEKHA5 Missense_Mutation p.G143C 0.17 deleterious(0.02) probably_damaging(0.986) TCGA-3M-AB46-01 12 25368493 25368493 C G KRAS Missense_Mutation p.R151T 0.30 tolerated(0.05) benign(0.09) TCGA-3M-AB46-01 12 46287271 46287271 C G ARID2 Missense_Mutation p.A1739G 0.38 deleterious(0) probably_damaging(0.996) TCGA-3M-AB46-01 12 49230727 49230727 A C DDX23 Nonsense_Mutation p.Y320* 0.36 TCGA-3M-AB46-01 12 49361882 49361882 G - WNT10B Frame_Shift_Del p.S187Afs*53 0.17 TCGA-3M-AB46-01 12 49391533 49391533 C G DDN Missense_Mutation p.E376Q 0.38 deleterious_low_confidence(0.01) benign(0.236) TCGA-3M-AB46-01 12 49521866 49521866 C A TUBA1B Nonsense_Mutation p.E411* 0.39 TCGA-3M-AB46-01 12 52779260 52779260 G T KRT84 Missense_Mutation p.S37Y 0.40 tolerated(0.13) probably_damaging(0.979) TCGA-3M-AB46-01 12 57484948 57484950 GAG AA NAB2 Frame_Shift_Del p.E42Nfs*62 0.24 TCGA-3M-AB46-01 12 69784024 69784024 T C YEATS4 Silent p.S204S 0.39 TCGA-3M-AB46-01 12 75444784 75444784 C A KCNC2 Missense_Mutation p.G334V 0.30 deleterious(0.01) probably_damaging(0.997) TCGA-3M-AB46-01 13 114188370 114188379 GAAGTTCTCC - TMCO3 Frame_Shift_Del p.V453Sfs*4 0.11 TCGA-3M-AB46-01 13 33306313 33306313 C T PDS5B Silent p.I733I 0.06 TCGA-3M-AB46-01 13 49033907 49033921 ACCCTTTTCCAGCAC - RB1 In_Frame_Del p.F684_L688del 0.76 TCGA-3M-AB46-01 14 19571395 19571395 G T POTEG Nonsense_Mutation p.G392* 0.16 TCGA-3M-AB46-01 14 20611922 20611922 A C OR4N5 Missense_Mutation p.T10P 0.04 deleterious(0.01) possibly_damaging(0.501) TCGA-3M-AB46-01 14 23900708 23900890 14:23900708-23900890 - MYH7 large deletion p.X214_splice 0.16 TCGA-3M-AB46-01 14 31058660 31058660 C G G2E3 Missense_Mutation p.I69M 0.38 deleterious(0) probably_damaging(0.941) TCGA-3M-AB46-01 15 24921521 24921521 C A NPAP1 Silent p.I169I 0.42 TCGA-3M-AB46-01 15 27184450 27184450 G A GABRA5 Intron 0.26 TCGA-3M-AB46-01 15 34140496 34140496 C A RYR3 Missense_Mutation p.P4501H 0.06 probably_damaging(0.995) TCGA-3M-AB46-01 15 34140514 34140514 G T RYR3 Missense_Mutation p.R4507M 0.07 probably_damaging(0.928) TCGA-3M-AB46-01 15 34640592 34640592 G T NUTM1 Missense_Mutation p.A147S 0.45 tolerated(0.13) benign(0.369) TCGA-3M-AB46-01 15 43821990 43821990 C A MAP1A Missense_Mutation p.D2726E 0.51 probably_damaging(0.994) TCGA-3M-AB46-01 15 74467792 74467792 C T ISLR Missense_Mutation p.T198M 0.61 deleterious(0) possibly_damaging(0.828) TCGA-3M-AB46-01 16 11016341 11016341 C T CIITA Missense_Mutation p.T1104M 0.39 deleterious(0) probably_damaging(0.931) TCGA-3M-AB46-01 16 2164288 2164288 C T PKD1 Silent p.V912V 0.36 TCGA-3M-AB46-01 16 30749172 30749172 C G SRCAP Missense_Mutation p.P2604R 0.32 unknown(0) TCGA-3M-AB46-01 16 3304249 3304249 C G MEFV Silent p.S273S 0.31 TCGA-3M-AB46-01 16 4247875 4247875 G A SRL Missense_Mutation p.P101S 0.34 deleterious(0.05) probably_damaging(0.999) TCGA-3M-AB46-01 16 57504943 57504943 C T POLR2C Missense_Mutation p.S247L 0.60 tolerated(0.07) possibly_damaging(0.562) TCGA-3M-AB46-01 16 67699011 67699011 C T ENKD1 Missense_Mutation p.R114H 0.61 deleterious(0) probably_damaging(0.981) TCGA-3M-AB46-01 16 85701750 85701750 C T GSE1 Silent p.S1045S 0.56 TCGA-3M-AB46-01 16 9857680 9857680 G A GRIN2A Missense_Mutation p.R1241W 0.46 deleterious(0.01) probably_damaging(0.978) TCGA-3M-AB46-01 17 10265443 10265443 A C MYH13 Missense_Mutation p.M166R 0.61 deleterious(0) probably_damaging(0.979) TCGA-3M-AB46-01 17 1399168 1399168 C T INPP5K Silent p.P432P 0.64 TCGA-3M-AB46-01 17 19317914 19317914 G T RNF112 Missense_Mutation p.V317F 0.49 deleterious(0) probably_damaging(0.999) TCGA-3M-AB46-01 17 25636250 25636250 G A WSB1 Missense_Mutation p.R279Q 0.55 tolerated(0.37) benign(0.027) TCGA-3M-AB46-01 17 29556218 29556218 C T NF1 Missense_Mutation p.T862I 0.16 tolerated(0.28) probably_damaging(0.986) TCGA-3M-AB46-01 17 34072059 34072059 C T GAS2L2 Silent p.V819V 0.28 TCGA-3M-AB46-01 17 34105996 34105996 C A MMP28 Missense_Mutation p.G92V 0.27 deleterious(0) probably_damaging(1) TCGA-3M-AB46-01 17 34328553 34328553 C G CCL15 5'UTR 0.34 TCGA-3M-AB46-01 17 34958242 34958242 G A MRM1 Translation_Start_Site p.M1? 0.19 deleterious_low_confidence(0) possibly_damaging(0.728) TCGA-3M-AB46-01 17 39183136 39183136 C T KRTAP1-5 Missense_Mutation p.C91Y 0.28 deleterious(0.01) unknown(0) TCGA-3M-AB46-01 17 40738092 40738107 GCCCAGGGACGTAGCG - FAM134C Frame_Shift_Del p.R185Ffs*6 0.13 TCGA-3M-AB46-01 17 40914926 40914926 C A RAMP2 3'UTR 0.35 TCGA-3M-AB46-01 17 43196396 43196396 G A PLCD3 Silent p.S233S 0.20 TCGA-3M-AB46-01 17 48435894 48435894 C T XYLT2 Silent p.L756L 0.10 TCGA-3M-AB46-01 17 48557113 48557113 G T RSAD1 Missense_Mutation p.G87W 0.19 deleterious(0) probably_damaging(0.995) TCGA-3M-AB46-01 17 48827960 48827960 A G LUC7L3 Missense_Mutation p.K413E 0.43 deleterious_low_confidence(0.01) possibly_damaging(0.636) TCGA-3M-AB46-01 17 5264846 5264846 C T RABEP1 Missense_Mutation p.T480I 0.11 deleterious(0) probably_damaging(1) TCGA-3M-AB46-01 17 61769609 61769609 C T MAP3K3 Silent p.N525N 0.34 TCGA-3M-AB46-01 17 73487137 73487137 T G KIAA0195 Missense_Mutation p.L379R 0.18 deleterious(0) possibly_damaging(0.541) TCGA-3M-AB46-01 17 7577093 7577096 CGGT - TP53 Frame_Shift_Del p.D281Gfs*63 0.35 TCGA-3M-AB46-01 17 7727208 7727208 C T DNAH2 Missense_Mutation p.R3796C 0.46 probably_damaging(0.989) TCGA-3M-AB46-01 17 80042966 80042966 C G FASN Missense_Mutation p.G1452R 0.09 deleterious(0) probably_damaging(1) TCGA-3M-AB46-01 17 8050301 8050301 C G PER1 Missense_Mutation p.C550S 0.56 deleterious(0.01) probably_damaging(0.968) TCGA-3M-AB46-01 18 61323084 61323084 C - SERPINB3 Frame_Shift_Del p.G327Efs*23 0.35 TCGA-3M-AB46-01 19 12692500 12692502 TCT - ZNF490 In_Frame_Del p.E129del 0.35 TCGA-3M-AB46-01 19 1269854 1269854 G C CIRBP Intron 0.41 TCGA-3M-AB46-01 19 14810085 14810098 ATGCAAATGGTAAG - ZNF333 Splice_Site p.X101_splice 0.27 TCGA-3M-AB46-01 19 31767797 31767797 T G TSHZ3 Missense_Mutation p.N968H 0.33 deleterious(0) possibly_damaging(0.728) TCGA-3M-AB46-01 19 3496835 3496835 C T DOHH 5'UTR 0.36 TCGA-3M-AB46-01 19 42813821 42813821 C T PRR19 Missense_Mutation p.R29C 0.34 deleterious(0) probably_damaging(0.999) TCGA-3M-AB46-01 19 44128383 44128383 C G CADM4 Missense_Mutation p.V314L 0.43 tolerated(0.64) benign(0.054) TCGA-3M-AB46-01 19 44251858 44251858 C T SMG9 Silent p.G139G 0.26 TCGA-3M-AB46-01 19 45719416 45719417 GG - EXOC3L2 Frame_Shift_Del p.H286Ffs*3 0.30 TCGA-3M-AB46-01 19 46351147 46351153 CGGATGC - SYMPK Frame_Shift_Del p.G178Afs*74 0.12 TCGA-3M-AB46-01 19 51462570 51462570 A G KLK6 Silent p.G195G 0.25 TCGA-3M-AB46-01 19 56572945 56572945 C T NLRP5 3'UTR 0.24 TCGA-3M-AB46-01 19 56953258 56953258 C T ZNF667 Missense_Mutation p.R369Q 0.29 tolerated(0.41) benign(0.025) TCGA-3M-AB46-01 19 57932097 57932097 C T ZNF17 Missense_Mutation p.P413S 0.09 deleterious(0.01) benign(0.021) TCGA-3M-AB46-01 19 58862909 58862909 G T A1BG Missense_Mutation p.P253H 0.56 tolerated(0.15) benign(0.111) TCGA-3M-AB46-01 19 8553590 8553590 C A HNRNPM Missense_Mutation p.A682D 0.24 deleterious(0) probably_damaging(0.973) TCGA-3M-AB46-01 1 114437736 114437736 A T AP4B1 Missense_Mutation p.I724N 0.39 deleterious(0) benign(0.278) TCGA-3M-AB46-01 1 120269661 120269678 GAATTCTTGGCCTGGGCA - PHGDH In_Frame_Del p.L151_I156del 0.28 TCGA-3M-AB46-01 1 152280040 152280041 - A FLG Frame_Shift_Ins p.S2441Ffs*44 0.20 TCGA-3M-AB46-01 1 152281208 152281208 C G FLG Missense_Mutation p.E2052Q 0.28 benign(0.403) TCGA-3M-AB46-01 1 154919252 154919252 T A PBXIP1 Missense_Mutation p.M300L 0.18 tolerated(1) benign(0.006) TCGA-3M-AB46-01 1 162313705 162313705 G C NOS1AP Missense_Mutation p.Q178H 0.33 deleterious(0.01) possibly_damaging(0.827) TCGA-3M-AB46-01 1 169511581 169511581 C G F5 Missense_Mutation p.G916A 0.27 tolerated_low_confidence(0.77) possibly_damaging(0.899) TCGA-3M-AB46-01 1 171174588 171174588 T C FMO2 Missense_Mutation p.F333S 0.29 deleterious(0.02) possibly_damaging(0.782) TCGA-3M-AB46-01 1 171251130 171251130 G C FMO1 Missense_Mutation p.E281Q 0.29 tolerated(0.2) benign(0.415) TCGA-3M-AB46-01 1 17265404 17265404 G A CROCC Missense_Mutation p.A459T 0.26 possibly_damaging(0.646) TCGA-3M-AB46-01 1 17316715 17316715 C A ATP13A2 Silent p.L773L 0.56 TCGA-3M-AB46-01 1 175372718 175372718 G A TNR Silent p.H178H 0.56 TCGA-3M-AB46-01 1 176708803 176708803 T G PAPPA2 Missense_Mutation p.I1280M 0.27 deleterious(0) possibly_damaging(0.494) TCGA-3M-AB46-01 1 20879704 20879704 G T FAM43B Missense_Mutation p.A80S 0.44 deleterious(0.03) possibly_damaging(0.901) TCGA-3M-AB46-01 1 226180212 226180212 C G SDE2 Missense_Mutation p.R136P 0.23 deleterious(0) probably_damaging(0.992) TCGA-3M-AB46-01 1 237617734 237617734 G T RYR2 Missense_Mutation p.D446Y 0.24 possibly_damaging(0.7) TCGA-3M-AB46-01 1 238051689 238051689 T G ZP4 Missense_Mutation p.E174D 0.34 tolerated(1) benign(0.009) TCGA-3M-AB46-01 1 247582138 247582138 G T NLRP3 Silent p.L14L 0.42 TCGA-3M-AB46-01 1 247582140 247582140 A G NLRP3 Missense_Mutation p.E15G 0.42 deleterious(0) probably_damaging(0.999) TCGA-3M-AB46-01 1 248616785 248616785 G A OR2T2 Missense_Mutation p.M229I 0.75 deleterious(0.04) benign(0.01) TCGA-3M-AB46-01 1 249210816 249210816 G A PGBD2 Silent p.G11G 0.42 TCGA-3M-AB46-01 1 32138054 32138054 G C COL16A1 Missense_Mutation p.P1023R 0.23 unknown(0) TCGA-3M-AB46-01 1 36814310 36814310 C T STK40 Missense_Mutation p.V244M 0.21 deleterious(0) probably_damaging(0.989) TCGA-3M-AB46-01 1 38305626 38305626 G A MTF1 Nonsense_Mutation p.Q205* 0.38 TCGA-3M-AB46-01 1 46744435 46744435 G A LRRC41 3'UTR 0.41 TCGA-3M-AB46-01 1 46878813 46878813 C T FAAH Missense_Mutation p.T511M 0.53 tolerated(0.1) benign(0.06) TCGA-3M-AB46-01 1 51735726 51735749 AGGTCTTATACAACATCTGCCTAA - RNF11 In_Frame_Del p.L76_G83del 0.29 TCGA-3M-AB46-01 20 10622320 10622320 A G JAG1 Missense_Mutation p.C902R 0.33 deleterious(0) possibly_damaging(0.857) TCGA-3M-AB46-01 20 25604580 25604580 C T NANP Missense_Mutation p.G2E 0.30 tolerated(0.08) benign(0.096) TCGA-3M-AB46-01 20 35580110 35580111 CT A SAMHD1 5'UTR 0.09 TCGA-3M-AB46-01 20 43355843 43355843 G T WISP2 Silent p.V216V 0.19 TCGA-3M-AB46-01 20 44540095 44540095 G C PLTP 5'UTR 0.11 TCGA-3M-AB46-01 20 45129915 45129915 A C ZNF334 3'UTR 0.23 TCGA-3M-AB46-01 20 50290814 50290814 C A ATP9A Missense_Mutation p.K305N 0.19 deleterious(0) probably_damaging(0.918) TCGA-3M-AB46-01 20 60902583 60902583 A G LAMA5 Splice_Site p.X1646_splice 0.26 TCGA-3M-AB46-01 20 61039777 61039777 T - GATA5 3'UTR 0.33 TCGA-3M-AB46-01 20 61542778 61542778 G T DIDO1 Missense_Mutation p.R63S 0.22 probably_damaging(0.998) TCGA-3M-AB46-01 21 28306818 28306818 T A ADAMTS5 Missense_Mutation p.K552N 0.29 tolerated(0.24) benign(0.103) TCGA-3M-AB46-01 21 31692283 31692283 A G KRTAP26-1 Missense_Mutation p.L24P 0.39 tolerated(0.16) benign(0.045) TCGA-3M-AB46-01 21 34860886 34860906 TCTCTGAGTTGCTCAATAGTA - DNAJC28 In_Frame_Del p.D265_R271del 0.32 TCGA-3M-AB46-01 21 38569941 38569941 G C TTC3 Missense_Mutation p.D1884H 0.32 deleterious(0) probably_damaging(0.928) TCGA-3M-AB46-01 22 38698909 38698909 C T CSNK1E Missense_Mutation p.R98H 0.08 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-3M-AB46-01 2 113940668 113940668 G T PSD4 Missense_Mutation p.G212V 0.53 deleterious_low_confidence(0.03) benign(0.141) TCGA-3M-AB46-01 2 140997082 140997082 C G LRP1B Silent p.V4448V 0.48 TCGA-3M-AB46-01 2 141356383 141356383 C A LRP1B Missense_Mutation p.W2337C 0.33 probably_damaging(0.926) TCGA-3M-AB46-01 2 141643736 141643736 A G LRP1B Missense_Mutation p.I1312T 0.33 benign(0.152) TCGA-3M-AB46-01 2 144381763 144381763 G C ARHGAP15 Silent p.L355L 0.28 TCGA-3M-AB46-01 2 149857281 149857281 G A KIF5C Silent p.G786G 0.31 TCGA-3M-AB46-01 2 160139509 160139509 G T WDSUB1 Silent p.L24L 0.39 TCGA-3M-AB46-01 2 160608931 160608933 AGA - MARCH7 In_Frame_Del p.E548del 0.19 TCGA-3M-AB46-01 2 160608978 160608980 CAT - MARCH7 In_Frame_Del p.S563del 0.19 TCGA-3M-AB46-01 2 160609064 160609064 C G MARCH7 Missense_Mutation p.Q589E 0.31 tolerated(0.08) possibly_damaging(0.692) TCGA-3M-AB46-01 2 179517425 179517425 C T TTN Missense_Mutation p.V13000M 0.11 TCGA-3M-AB46-01 2 179586588 179586588 T A TTN Missense_Mutation p.Q7601L 0.34 TCGA-3M-AB46-01 2 201407340 201407340 G A SGOL2 Silent p.K142K 0.29 TCGA-3M-AB46-01 2 20205707 20205707 A T MATN3 Missense_Mutation p.D196E 0.15 deleterious(0) probably_damaging(0.999) TCGA-3M-AB46-01 2 220159799 220159799 T G PTPRN Missense_Mutation p.N858T 0.38 deleterious(0) probably_damaging(1) TCGA-3M-AB46-01 2 27360290 27360290 G A C2orf53 Missense_Mutation p.P303L 0.08 deleterious(0) probably_damaging(0.999) TCGA-3M-AB46-01 2 3593373 3593373 G C RNASEH1 3'UTR 0.29 TCGA-3M-AB46-01 2 43937436 43937436 T G PLEKHH2 Silent p.L727L 0.39 TCGA-3M-AB46-01 2 74750455 74750455 T G DQX1 Silent p.S342S 0.36 TCGA-3M-AB46-01 2 80529844 80529844 G A LRRTM1 Silent p.A367A 0.14 TCGA-3M-AB46-01 3 120998761 120998761 C T STXBP5L Nonsense_Mutation p.R690* 0.38 TCGA-3M-AB46-01 3 121151871 121151871 C T POLQ Missense_Mutation p.R2518Q 0.22 tolerated(0.67) benign(0.22) TCGA-3M-AB46-01 3 121412841 121412841 C T GOLGB1 Missense_Mutation p.E2177K 0.38 possibly_damaging(0.839) TCGA-3M-AB46-01 3 124952361 124952361 C T ZNF148 Silent p.Q403Q 0.31 TCGA-3M-AB46-01 3 135870192 135870192 C T MSL2 Missense_Mutation p.E511K 0.42 deleterious(0.01) probably_damaging(0.99) TCGA-3M-AB46-01 3 137982623 137982623 T A ARMC8 Missense_Mutation p.L379M 0.36 tolerated(0.11) possibly_damaging(0.861) TCGA-3M-AB46-01 3 172165334 172165334 T G GHSR Intron 0.34 TCGA-3M-AB46-01 3 184953132 184953132 G A EHHADH Silent p.F99F 0.22 TCGA-3M-AB46-01 3 195300764 195300764 G C APOD Missense_Mutation p.L68V 0.17 tolerated(0.06) benign(0.036) TCGA-3M-AB46-01 3 37998610 37998610 G T CTDSPL Missense_Mutation p.Q81H 0.20 tolerated(0.12) benign(0.002) TCGA-3M-AB46-01 3 48309465 48309465 A G ZNF589 Missense_Mutation p.Q95R 0.46 tolerated(0.07) benign(0.403) TCGA-3M-AB46-01 3 58514536 58514536 G A ACOX2 Silent p.F380F 0.46 TCGA-3M-AB46-01 3 97852304 97852304 C G OR5H1 Missense_Mutation p.L255V 0.05 deleterious(0.01) possibly_damaging(0.687) TCGA-3M-AB46-01 4 114271387 114271387 G A ANK2 Missense_Mutation p.D1470N 0.61 benign(0.027) TCGA-3M-AB46-01 4 142949995 142949996 - AGCTGT INPP4B In_Frame_Ins p.Q904_L905dup 0.47 TCGA-3M-AB46-01 4 153247302 153247302 A T FBXW7 Missense_Mutation p.H500Q 0.58 deleterious(0) probably_damaging(1) TCGA-3M-AB46-01 4 155468878 155468878 A G PLRG1 Missense_Mutation p.Y82H 0.04 tolerated(0.58) possibly_damaging(0.83) TCGA-3M-AB46-01 4 170638959 170638959 A G CLCN3 Missense_Mutation p.I795V 0.52 tolerated(0.07) benign(0.001) TCGA-3M-AB46-01 4 1808641 1808641 C T FGFR3 Missense_Mutation p.L754F 0.38 deleterious(0) probably_damaging(0.999) TCGA-3M-AB46-01 4 185350154 185350154 G A IRF2 Missense_Mutation p.P22L 0.56 deleterious(0) probably_damaging(0.997) TCGA-3M-AB46-01 4 6863214 6863214 C - KIAA0232 Frame_Shift_Del p.P369Lfs*2 0.38 TCGA-3M-AB46-01 5 115423238 115423238 G T COMMD10 Missense_Mutation p.R29I 0.64 deleterious(0) possibly_damaging(0.877) TCGA-3M-AB46-01 5 126206465 126206465 A C MARCH3 Missense_Mutation p.C208G 0.52 deleterious(0) benign(0.288) TCGA-3M-AB46-01 5 159820958 159820958 C G C5orf54 Missense_Mutation p.E514Q 0.34 tolerated(0.09) possibly_damaging(0.852) TCGA-3M-AB46-01 5 167379716 167379716 G A TENM2 Missense_Mutation p.R279Q 0.31 tolerated_low_confidence(0.31) probably_damaging(0.998) TCGA-3M-AB46-01 5 168149985 168149985 G T SLIT3 Missense_Mutation p.S788R 0.30 deleterious(0.01) benign(0.022) TCGA-3M-AB46-01 5 178608106 178608106 G C ADAMTS2 Silent p.V314V 0.35 TCGA-3M-AB46-01 5 79031968 79031968 G C CMYA5 Missense_Mutation p.L2460F 0.52 probably_damaging(0.986) TCGA-3M-AB46-01 5 79089419 79089419 C T CMYA5 Silent p.C3983C 0.50 TCGA-3M-AB46-01 6 145093028 145093041 ACCTTTTTTTTCCA - UTRN Splice_Site p.X2832_splice 0.11 TCGA-3M-AB46-01 6 150710640 150710640 G C IYD Missense_Mutation p.V111L 0.29 deleterious(0.01) possibly_damaging(0.566) TCGA-3M-AB46-01 6 151197281 151197281 G A MTHFD1L Missense_Mutation p.A95T 0.31 tolerated(0.63) benign(0.002) TCGA-3M-AB46-01 6 168226413 168226413 C G MLLT4 5'Flank 0.31 TCGA-3M-AB46-01 6 31431595 31431602 GGGACAAG - HCP5 RNA 0.09 TCGA-3M-AB46-01 6 31431636 31431636 T - HCP5 RNA 0.10 TCGA-3M-AB46-01 6 42713487 42713487 C A TBCC Missense_Mutation p.D109Y 0.16 deleterious(0) possibly_damaging(0.667) TCGA-3M-AB46-01 6 43323607 43323607 G A ZNF318 Nonsense_Mutation p.R489* 0.19 TCGA-3M-AB46-01 6 69666617 69666617 A T BAI3 Missense_Mutation p.T481S 0.35 tolerated(0.07) benign(0.001) TCGA-3M-AB46-01 7 100732199 100732199 C A TRIM56 Missense_Mutation p.L536I 0.38 tolerated(0.13) probably_damaging(0.996) TCGA-3M-AB46-01 7 122635602 122635602 A G TAS2R16 Silent p.V29V 0.35 TCGA-3M-AB46-01 7 20826471 20826471 G A SP8 5'UTR 0.36 TCGA-3M-AB46-01 7 34118549 34118549 C T BMPER Nonsense_Mutation p.Q387* 0.25 TCGA-3M-AB46-01 7 36661319 36661331 CTACCTGGGTACA - AOAH Frame_Shift_Del p.V213Efs*66 0.22 TCGA-3M-AB46-01 7 37136223 37136223 C T ELMO1 Splice_Site p.X434_splice 0.39 TCGA-3M-AB46-01 7 54612409 54612409 T C VSTM2A Silent p.Y58Y 0.38 TCGA-3M-AB46-01 7 76866304 76866304 C T CCDC146 Missense_Mutation p.A66V 0.23 deleterious(0.01) benign(0.001) TCGA-3M-AB46-01 7 98647255 98647255 C T SMURF1 Missense_Mutation p.R321K 0.37 deleterious(0.02) possibly_damaging(0.859) TCGA-3M-AB46-01 8 113649081 113649081 C T CSMD3 Missense_Mutation p.R1227Q 0.24 deleterious(0.04) probably_damaging(0.999) TCGA-3M-AB46-01 8 144902853 144902853 G A PUF60 Missense_Mutation p.L111F 0.39 deleterious(0.03) probably_damaging(0.994) TCGA-3M-AB46-01 8 23429065 23429065 C T SLC25A37 Silent p.I238I 0.52 TCGA-3M-AB46-01 9 114454779 114454779 T A C9orf84 Missense_Mutation p.I1096F 0.33 deleterious(0) probably_damaging(0.988) TCGA-3M-AB46-01 9 125424805 125424805 C A OR1L1 Missense_Mutation p.Q271K 0.30 tolerated(0.42) benign(0.007) TCGA-3M-AB46-01 9 130688162 130688162 G C PIP5KL1 Silent p.G249G 0.38 TCGA-3M-AB46-01 9 131231605 131231605 G C ODF2 Missense_Mutation p.M131I 0.36 tolerated(0.05) benign(0.062) TCGA-3M-AB46-01 9 137779297 137779297 A G FCN2 3'UTR 0.39 TCGA-3M-AB46-01 9 14748392 14748409 TCCTTACTGTTTTGCCAT - FREM1 Splice_Site p.X1929_splice 0.64 TCGA-3M-AB46-01 9 34371783 34371783 C G KIAA1161 Missense_Mutation p.V353L 0.06 deleterious(0.01) possibly_damaging(0.831) TCGA-3M-AB46-01 9 35736866 35736866 C A GBA2 3'UTR 0.07 TCGA-3M-AB46-01 9 35825901 35825901 C G FAM221B Missense_Mutation p.E86D 0.12 deleterious(0.04) benign(0.144) TCGA-3M-AB46-01 9 79323221 79323221 T A PRUNE2 Missense_Mutation p.Q1323H 0.33 tolerated(0.34) benign(0.059) TCGA-3M-AB46-01 9 96214915 96214925 GAGGGCTGGGA - FAM120AOS Frame_Shift_Del p.S23Kfs*166 0.45 TCGA-3M-AB46-01 9 968111 968111 T C DMRT1 Missense_Mutation p.V365A 0.48 deleterious(0.03) possibly_damaging(0.725) TCGA-3M-AB46-01 X 109924755 109924755 C A CHRDL1 Nonsense_Mutation p.E371* 0.07 TCGA-3M-AB46-01 X 152612545 152612545 C T ZNF275 Silent p.C134C 0.64 TCGA-3M-AB46-01 X 53172314 53172314 G A LINC01155 RNA 0.80 TCGA-3M-AB46-01 X 53172315 53172315 G T LINC01155 RNA 0.78 TCGA-3M-AB47-01 10 122348942 122348942 G A PPAPDC1A Silent p.K248K 0.24 TCGA-3M-AB47-01 10 67748511 67748511 G A CTNNA3 Missense_Mutation p.A735V 0.12 deleterious(0.02) unknown(0) TCGA-3M-AB47-01 10 70731674 70731674 C T DDX21 Missense_Mutation p.P472S 0.30 tolerated(0.08) possibly_damaging(0.656) TCGA-3M-AB47-01 11 110327697 110327697 C T FDX1 Silent p.H122H 0.22 TCGA-3M-AB47-01 11 1272808 1272808 G A MUC5B Missense_Mutation p.V4900M 0.22 unknown(0) TCGA-3M-AB47-01 11 5364501 5364501 A G OR51B5 Missense_Mutation p.L85P 0.20 deleterious(0.05) possibly_damaging(0.823) TCGA-3M-AB47-01 11 65733660 65733660 G A SART1 Missense_Mutation p.E318K 0.48 deleterious(0.03) possibly_damaging(0.778) TCGA-3M-AB47-01 11 66444524 66444524 A C RBM4B Silent p.L9L 0.10 TCGA-3M-AB47-01 11 7060016 7060016 C A NLRP14 Missense_Mutation p.P67T 0.20 tolerated(0.09) probably_damaging(0.91) TCGA-3M-AB47-01 11 76507255 76507255 G T TSKU Missense_Mutation p.V199L 0.20 deleterious(0.03) benign(0.118) TCGA-3M-AB47-01 12 123782558 123782558 G A SBNO1 Missense_Mutation p.R1336W 0.18 deleterious(0) possibly_damaging(0.656) TCGA-3M-AB47-01 12 125460026 125460026 G A DHX37 Missense_Mutation p.R307C 0.28 deleterious(0) probably_damaging(0.979) TCGA-3M-AB47-01 12 21693487 21693487 G A GYS2 Missense_Mutation p.R556W 0.18 deleterious(0) probably_damaging(0.937) TCGA-3M-AB47-01 12 49425458 49425458 G A KMT2D Missense_Mutation p.P4344S 0.22 unknown(0) TCGA-3M-AB47-01 12 55945248 55945248 C A OR6C4 Missense_Mutation p.L80M 0.14 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-3M-AB47-01 12 57009162 57009162 G A BAZ2A Silent p.N124N 0.12 TCGA-3M-AB47-01 12 68052154 68052154 C T DYRK2 Silent p.G489G 0.15 TCGA-3M-AB47-01 12 78583905 78583905 C A NAV3 Missense_Mutation p.A2044E 0.18 deleterious(0) possibly_damaging(0.856) TCGA-3M-AB47-01 13 111119415 111119415 A G COL4A2 Silent p.P689P 0.15 TCGA-3M-AB47-01 13 36686345 36686345 A C DCLK1 Missense_Mutation p.S128R 0.21 deleterious(0.04) unknown(0) TCGA-3M-AB47-01 13 47466585 47466585 G A HTR2A Missense_Mutation p.R185C 0.18 deleterious(0) probably_damaging(1) TCGA-3M-AB47-01 14 101498355 101498355 G A MIR543 RNA 0.24 TCGA-3M-AB47-01 14 23862962 23862962 G A MYH6 Silent p.D947D 0.13 TCGA-3M-AB47-01 14 23900983 23900983 T C MYH7 Missense_Mutation p.Q209R 0.18 tolerated(0.37) benign(0.002) TCGA-3M-AB47-01 14 77705091 77705091 C A TMEM63C Missense_Mutation p.L236I 0.15 tolerated(0.51) benign(0.003) TCGA-3M-AB47-01 14 86088480 86088480 C T FLRT2 Missense_Mutation p.R208C 0.17 tolerated(0.05) possibly_damaging(0.636) TCGA-3M-AB47-01 15 25222981 25222981 C T SNRPN Silent p.A159A 0.23 TCGA-3M-AB47-01 15 43531361 43531361 C T TGM5 Missense_Mutation p.G369S 0.28 deleterious(0.04) possibly_damaging(0.68) TCGA-3M-AB47-01 15 44907718 44907718 G A SPG11 Missense_Mutation p.L961F 0.23 deleterious(0) probably_damaging(0.986) TCGA-3M-AB47-01 15 59359282 59359282 G A RNF111 Silent p.Q562Q 0.23 TCGA-3M-AB47-01 15 78471970 78471970 C G ACSBG1 Missense_Mutation p.R469P 0.20 tolerated(1) benign(0.037) TCGA-3M-AB47-01 16 31091879 31091879 G A ZNF646 Missense_Mutation p.G1412S 0.11 tolerated(0.49) benign(0.04) TCGA-3M-AB47-01 16 31131665 31131665 C T KAT8 Missense_Mutation p.R98W 0.26 deleterious(0) probably_damaging(1) TCGA-3M-AB47-01 16 47703322 47703322 G A PHKB Missense_Mutation p.R875Q 0.13 deleterious(0) probably_damaging(0.999) TCGA-3M-AB47-01 16 51173801 51173801 C T SALL1 Missense_Mutation p.A778T 0.20 deleterious(0) probably_damaging(1) TCGA-3M-AB47-01 16 61854981 61854981 A C CDH8 Missense_Mutation p.L291R 0.20 deleterious(0.01) possibly_damaging(0.532) TCGA-3M-AB47-01 16 67328048 67328048 G A KCTD19 Silent p.F539F 0.22 TCGA-3M-AB47-01 16 68842752 68842752 G T CDH1 Splice_Site p.X229_splice 0.26 TCGA-3M-AB47-01 16 70841482 70841482 A G HYDIN 3'UTR 0.10 TCGA-3M-AB47-01 16 721195 721195 C T RHOT2 Silent p.L287L 0.17 TCGA-3M-AB47-01 16 81151049 81151049 C T PKD1L2 RNA 0.16 TCGA-3M-AB47-01 17 26941186 26941186 C G RP11-192H23.4 5'UTR 0.28 TCGA-3M-AB47-01 17 29533316 29533316 G C NF1 Missense_Mutation p.R440P 0.15 deleterious(0) probably_damaging(0.986) TCGA-3M-AB47-01 17 38420931 38420931 C T WIPF2 Missense_Mutation p.T168M 0.13 deleterious(0.01) possibly_damaging(0.53) TCGA-3M-AB47-01 17 39578561 39578561 G A KRT37 Silent p.T286T 0.19 TCGA-3M-AB47-01 17 41346512 41346512 C G NBR1 Missense_Mutation p.A557G 0.15 deleterious(0) probably_damaging(0.999) TCGA-3M-AB47-01 17 42636503 42636503 G A FZD2 Missense_Mutation p.E483K 0.13 deleterious(0) probably_damaging(0.998) TCGA-3M-AB47-01 17 62025396 62025396 G A SCN4A Missense_Mutation p.R1058W 0.36 deleterious(0) probably_damaging(1) TCGA-3M-AB47-01 17 76989634 76989634 A C CANT1 Nonstop_Mutation p.*402Eext*16 0.06 TCGA-3M-AB47-01 18 31803129 31803129 C T NOL4 Missense_Mutation p.R30H 0.08 deleterious(0) probably_damaging(0.995) TCGA-3M-AB47-01 18 44559330 44559330 T C TCEB3B 3'UTR 0.22 TCGA-3M-AB47-01 18 55862952 55862952 C T NEDD4L Intron 0.22 TCGA-3M-AB47-01 18 6985329 6985329 A T LAMA1 Missense_Mutation p.V1856D 0.11 deleterious(0.02) probably_damaging(0.992) TCGA-3M-AB47-01 18 6986186 6986186 C T LAMA1 Missense_Mutation p.E1777K 0.27 deleterious(0) probably_damaging(0.941) TCGA-3M-AB47-01 18 7038884 7038884 G T LAMA1 Missense_Mutation p.N496K 0.25 deleterious(0) probably_damaging(0.955) TCGA-3M-AB47-01 19 23927176 23927176 T C ZNF681 Silent p.K392K 0.06 TCGA-3M-AB47-01 19 23927450 23927450 T C ZNF681 Missense_Mutation p.K301R 0.14 tolerated(0.05) benign(0.292) TCGA-3M-AB47-01 19 35551557 35551557 G A HPN Missense_Mutation p.R216Q 0.20 tolerated(0.27) benign(0.005) TCGA-3M-AB47-01 19 35758544 35758544 C T LSR Silent p.H607H 0.14 TCGA-3M-AB47-01 19 36210841 36210841 C T KMT2B Missense_Mutation p.R198W 0.15 unknown(0) TCGA-3M-AB47-01 19 36229189 36229189 G A KMT2B Missense_Mutation p.G2627R 0.15 possibly_damaging(0.77) TCGA-3M-AB47-01 19 41135345 41135345 G A LTBP4 Missense_Mutation p.V1588I 0.21 tolerated(0.13) benign(0.009) TCGA-3M-AB47-01 19 48339544 48339544 A G CRX Missense_Mutation p.S49G 0.15 tolerated(0.08) benign(0.026) TCGA-3M-AB47-01 19 51133277 51133277 G A SYT3 Nonsense_Mutation p.Q276* 0.20 TCGA-3M-AB47-01 19 53644624 53644624 T A ZNF347 Missense_Mutation p.K487M 0.20 deleterious(0.01) benign(0.229) TCGA-3M-AB47-01 19 57088153 57088153 C A ZNF470 Missense_Mutation p.A119E 0.22 tolerated(0.79) benign(0.162) TCGA-3M-AB47-01 1 102269985 102269985 C T OLFM3 Missense_Mutation p.V396M 0.22 deleterious(0.02) possibly_damaging(0.906) TCGA-3M-AB47-01 1 152636835 152636835 G A LCE2D Missense_Mutation p.R85Q 0.15 tolerated_low_confidence(0.39) unknown(0) TCGA-3M-AB47-01 1 152785054 152785054 C A LCE1B Nonsense_Mutation p.C44* 0.20 TCGA-3M-AB47-01 1 160100055 160100056 - G ATP1A2 Frame_Shift_Ins p.L545Tfs*28 0.16 TCGA-3M-AB47-01 1 207108011 207108012 - G PIGR Frame_Shift_Ins p.K487Qfs*14 0.28 TCGA-3M-AB47-01 1 210415075 210415075 C A SERTAD4 Missense_Mutation p.S155Y 0.21 deleterious(0.02) possibly_damaging(0.647) TCGA-3M-AB47-01 1 21212729 21212729 T C EIF4G3 Missense_Mutation p.S747G 0.12 tolerated(0.22) benign(0.002) TCGA-3M-AB47-01 1 220355627 220355627 G A RAB3GAP2 Missense_Mutation p.S761L 0.20 tolerated(0.16) benign(0.105) TCGA-3M-AB47-01 1 75626616 75626616 A C LHX8 3'UTR 0.23 TCGA-3M-AB47-01 20 42680093 42680093 G A TOX2 Missense_Mutation p.A187T 0.34 tolerated(0.88) benign(0.004) TCGA-3M-AB47-01 20 49621045 49621045 C T KCNG1 Missense_Mutation p.R358H 0.21 deleterious(0) probably_damaging(1) TCGA-3M-AB47-01 22 22277638 22277638 G A PPM1F Missense_Mutation p.R398W 0.09 deleterious(0) probably_damaging(0.998) TCGA-3M-AB47-01 22 41982177 41982177 G A PMM1 Silent p.A36A 0.17 TCGA-3M-AB47-01 22 50693700 50693700 G A MAPK12 Missense_Mutation p.T317M 0.07 deleterious(0) benign(0.336) TCGA-3M-AB47-01 2 109388253 109388253 C G RANBP2 Missense_Mutation p.T2649S 0.22 tolerated(0.79) benign(0.023) TCGA-3M-AB47-01 2 141081465 141081465 C A LRP1B Missense_Mutation p.D4171Y 0.12 possibly_damaging(0.861) TCGA-3M-AB47-01 2 141660591 141660591 G T LRP1B Missense_Mutation p.L1222I 0.09 benign(0.364) TCGA-3M-AB47-01 2 144903265 144903265 G T GTDC1 Missense_Mutation p.A74D 0.20 deleterious(0) possibly_damaging(0.58) TCGA-3M-AB47-01 2 148654067 148654067 T G ACVR2A Missense_Mutation p.C85G 0.16 deleterious(0) probably_damaging(0.999) TCGA-3M-AB47-01 2 1664686 1664686 A T PXDN Missense_Mutation p.S602T 0.12 tolerated(0.36) benign(0.016) TCGA-3M-AB47-01 2 204137404 204137404 G A CYP20A1 Silent p.E204E 0.13 TCGA-3M-AB47-01 2 216274405 216274405 G T FN1 Missense_Mutation p.S727Y 0.19 deleterious(0) probably_damaging(0.998) TCGA-3M-AB47-01 2 27850473 27850474 - T CCDC121 Frame_Shift_Ins p.S227Kfs*5 0.19 TCGA-3M-AB47-01 2 63664612 63664612 C A WDPCP Missense_Mutation p.K192N 0.08 deleterious(0) probably_damaging(0.969) TCGA-3M-AB47-01 2 69093573 69093573 A G BMP10 Silent p.R155R 0.25 TCGA-3M-AB47-01 2 73899949 73899949 G A ALMS1P RNA 0.29 TCGA-3M-AB47-01 2 74867220 74867220 C T M1AP Missense_Mutation p.M61I 0.15 tolerated(1) benign(0.006) TCGA-3M-AB47-01 3 108288365 108288365 G A KIAA1524 Silent p.S328S 0.32 TCGA-3M-AB47-01 3 147108895 147108895 G A ZIC4 Missense_Mutation p.T326M 0.23 deleterious(0) probably_damaging(0.997) TCGA-3M-AB47-01 3 38591862 38591862 G A SCN5A Missense_Mutation p.L2001F 0.16 tolerated(0.08) benign(0.015) TCGA-3M-AB47-01 3 39152371 39152371 A T TTC21A Missense_Mutation p.S100C 0.28 tolerated(0.15) benign(0.03) TCGA-3M-AB47-01 3 49412946 49412946 C A RHOA Missense_Mutation p.S26I 0.16 deleterious(0) probably_damaging(0.918) TCGA-3M-AB47-01 3 49738099 49738099 C T RNF123 Silent p.L412L 0.20 TCGA-3M-AB47-01 3 52390732 52390732 C T DNAH1 Missense_Mutation p.R1266C 0.17 probably_damaging(0.999) TCGA-3M-AB47-01 4 126372813 126372813 T G FAT4 Missense_Mutation p.L3548V 0.21 probably_damaging(0.999) TCGA-3M-AB47-01 4 134073357 134073357 G A PCDH10 Missense_Mutation p.G688R 0.14 tolerated(0.53) possibly_damaging(0.604) TCGA-3M-AB47-01 4 5844849 5844849 C T CRMP1 Missense_Mutation p.E335K 0.21 deleterious(0) possibly_damaging(0.565) TCGA-3M-AB47-01 4 88583770 88583770 C T DMP1 Silent p.S280S 0.16 TCGA-3M-AB47-01 4 94436427 94436427 G A GRID2 Silent p.A686A 0.21 TCGA-3M-AB47-01 4 9784905 9784905 G A DRD5 Missense_Mutation p.V418I 0.26 tolerated(0.3) benign(0.06) TCGA-3M-AB47-01 5 145894702 145894702 T G GPR151 Silent p.I325I 0.21 TCGA-3M-AB47-01 5 176721919 176721919 G A NSD1 Missense_Mutation p.G2517E 0.25 deleterious_low_confidence(0) possibly_damaging(0.873) TCGA-3M-AB47-01 5 31297464 31297464 G T CDH6 Missense_Mutation p.V198F 0.25 deleterious(0.01) probably_damaging(0.997) TCGA-3M-AB47-01 5 45695778 45695778 C T HCN1 Missense_Mutation p.D140N 0.43 tolerated(0.16) probably_damaging(0.989) TCGA-3M-AB47-01 5 78734954 78734954 G T HOMER1 Missense_Mutation p.L136I 0.28 tolerated(0.48) benign(0) TCGA-3M-AB47-01 5 79026966 79026966 C T CMYA5 Missense_Mutation p.P793L 0.14 probably_damaging(0.995) TCGA-3M-AB47-01 6 101296023 101296023 C A ASCC3 Splice_Site p.X267_splice 0.19 TCGA-3M-AB47-01 6 109249319 109249320 - T ARMC2 Frame_Shift_Ins p.S461Ffs*7 0.18 TCGA-3M-AB47-01 6 126073229 126073229 A - HEY2 Frame_Shift_Del p.K81Nfs*7 0.20 TCGA-3M-AB47-01 6 151671012 151671012 G A AKAP12 Missense_Mutation p.V496I 0.19 tolerated(1) benign(0.002) TCGA-3M-AB47-01 6 152757043 152757043 G T SYNE1 Intron 0.17 TCGA-3M-AB47-01 6 154411068 154411068 G T OPRM1 Missense_Mutation p.G226V 0.21 tolerated(0.28) probably_damaging(0.923) TCGA-3M-AB47-01 6 155743908 155743908 C A NOX3 Nonsense_Mutation p.G410* 0.11 TCGA-3M-AB47-01 6 163987781 163987781 C T QKI Silent p.H321H 0.14 TCGA-3M-AB47-01 6 41752785 41752785 A G PRICKLE4 Missense_Mutation p.K118R 0.09 tolerated(0.18) benign(0.017) TCGA-3M-AB47-01 6 43269393 43269393 C G SLC22A7 Missense_Mutation p.R342G 0.33 deleterious(0.03) possibly_damaging(0.858) TCGA-3M-AB47-01 6 75841742 75841742 C T COL12A1 Missense_Mutation p.D1951N 0.22 benign(0.015) TCGA-3M-AB47-01 6 89888756 89888756 C T GABRR1 Silent p.P391P 0.21 TCGA-3M-AB47-01 7 152055756 152055756 G A KMT2C Nonsense_Mutation p.R56* 0.23 TCGA-3M-AB47-01 7 35674832 35674832 C T HERPUD2 Missense_Mutation p.R285Q 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-3M-AB47-01 7 53104282 53104282 G A POM121L12 3'UTR 0.22 TCGA-3M-AB47-01 7 77824369 77824369 T G MAGI2 Silent p.R697R 0.19 TCGA-3M-AB47-01 8 104898126 104898126 T C RIMS2 Silent p.P433P 0.12 TCGA-3M-AB47-01 8 12957110 12957110 G A DLC1 Silent p.H912H 0.13 TCGA-3M-AB47-01 8 139163916 139163916 C A FAM135B Silent p.V934V 0.13 TCGA-3M-AB47-01 8 26492375 26492375 G A DPYSL2 Missense_Mutation p.S257N 0.12 deleterious(0) possibly_damaging(0.811) TCGA-3M-AB47-01 8 37917549 37917549 G A EIF4EBP1 3'UTR 0.13 TCGA-3M-AB47-01 8 42329731 42329731 C T SLC20A2 Missense_Mutation p.V60M 0.18 tolerated(0.07) benign(0.058) TCGA-3M-AB47-01 8 49641647 49641647 T C EFCAB1 Missense_Mutation p.E177G 0.19 deleterious(0) probably_damaging(0.964) TCGA-3M-AB47-01 8 53073939 53073939 A G ST18 Silent p.P530P 0.12 TCGA-3M-AB47-01 8 73849054 73849054 G A KCNB2 Silent p.S488S 0.19 TCGA-3M-AB47-01 8 77618208 77618208 G A ZFHX4 Missense_Mutation p.G629S 0.22 probably_damaging(0.931) TCGA-3M-AB47-01 9 101816879 101816879 C A COL15A1 Missense_Mutation p.S991Y 0.47 deleterious(0) possibly_damaging(0.543) TCGA-3M-AB47-01 9 111641004 111641004 G A IKBKAP Missense_Mutation p.A1200V 0.17 tolerated(0.05) probably_damaging(0.999) TCGA-3M-AB47-01 9 125562864 125562864 G A OR1K1 Missense_Mutation p.V155I 0.15 tolerated(0.09) benign(0.001) TCGA-3M-AB47-01 9 16436896 16436896 C T BNC2 Missense_Mutation p.M432I 0.17 tolerated(0.5) possibly_damaging(0.643) TCGA-3M-AB47-01 9 39176070 39176070 G A CNTNAP3 Missense_Mutation p.P316L 0.34 tolerated(0.14) benign(0.064) TCGA-3M-AB47-01 9 463632 463632 G A DOCK8 Missense_Mutation p.E2062K 0.25 tolerated(0.52) probably_damaging(0.998) TCGA-3M-AB47-01 X 101141626 101141626 G T ZMAT1 Missense_Mutation p.Q195K 0.21 tolerated(0.42) benign(0.129) TCGA-3M-AB47-01 Y 4968215 4968215 G T PCDH11Y Missense_Mutation p.V866L 0.55 tolerated(0.16) benign(0.03) TCGA-B7-5816-01 10 101606727 101606727 C A ABCC2 Missense_Mutation p.L1386M 0.11 deleterious(0) probably_damaging(1) TCGA-B7-5816-01 10 102586780 102586780 G A PAX2 Missense_Mutation p.G369S 0.09 deleterious(0.02) benign(0.342) TCGA-B7-5816-01 10 102795320 102795320 C T SFXN3 Silent p.S80S 0.13 TCGA-B7-5816-01 10 104184490 104184490 G A CUEDC2 Missense_Mutation p.S45L 0.09 deleterious(0.02) probably_damaging(0.984) TCGA-B7-5816-01 10 104235541 104235541 C - TMEM180 Frame_Shift_Del p.P453Qfs*96 0.14 TCGA-B7-5816-01 10 105177579 105177579 C T PDCD11 Missense_Mutation p.P601S 0.10 deleterious(0.03) probably_damaging(0.998) TCGA-B7-5816-01 10 106976777 106976777 C T SORCS3 Silent p.D877D 0.18 TCGA-B7-5816-01 10 11363285 11363285 G A CELF2 Silent p.A410A 0.10 TCGA-B7-5816-01 10 121436448 121436448 A T BAG3 Missense_Mutation p.E461V 0.11 deleterious(0.04) unknown(0) TCGA-B7-5816-01 10 121541188 121541188 G A INPP5F Missense_Mutation p.V74M 0.14 deleterious(0.03) possibly_damaging(0.848) TCGA-B7-5816-01 10 124691943 124691943 T G C10orf88 Nonstop_Mutation p.*446Yext*42 0.15 TCGA-B7-5816-01 10 124746960 124746960 G A PSTK Missense_Mutation p.A330T 0.10 tolerated_low_confidence(0.07) benign(0) TCGA-B7-5816-01 10 124897036 124897036 C T HMX3 Missense_Mutation p.A288V 0.19 deleterious(0.03) probably_damaging(0.98) TCGA-B7-5816-01 10 125804216 125804216 A G CHST15 Missense_Mutation p.F256L 0.14 deleterious(0.03) probably_damaging(0.989) TCGA-B7-5816-01 10 126205813 126205813 C T LHPP Missense_Mutation p.A230V 0.20 deleterious(0.01) probably_damaging(0.92) TCGA-B7-5816-01 10 126694352 126694352 G C CTBP2 Intron 0.10 TCGA-B7-5816-01 10 127734632 127734632 C A ADAM12 Missense_Mutation p.G666C 0.13 deleterious(0) probably_damaging(0.996) TCGA-B7-5816-01 10 129897444 129897444 G A MKI67 3'UTR 0.19 TCGA-B7-5816-01 10 135020704 135020704 G A KNDC1 Missense_Mutation p.A1215T 0.23 tolerated(0.33) benign(0.284) TCGA-B7-5816-01 10 13701408 13701408 C T FRMD4A Missense_Mutation p.G661S 0.06 tolerated_low_confidence(1) benign(0) TCGA-B7-5816-01 10 16806444 16806444 C T RSU1 Missense_Mutation p.E76K 0.08 tolerated(0.12) benign(0.116) TCGA-B7-5816-01 10 21804116 21804116 G T SKIDA1 Missense_Mutation p.P879H 0.11 deleterious(0) unknown(0) TCGA-B7-5816-01 10 26800723 26800723 G T APBB1IP Missense_Mutation p.M193I 0.12 deleterious(0) probably_damaging(0.981) TCGA-B7-5816-01 10 27322259 27322259 T - ANKRD26 Frame_Shift_Del p.K1234Nfs*19 0.17 TCGA-B7-5816-01 10 27405252 27405252 T C YME1L1 Missense_Mutation p.D638G 0.09 deleterious(0) probably_damaging(1) TCGA-B7-5816-01 10 29821757 29821757 G A SVIL Silent p.S513S 0.12 TCGA-B7-5816-01 10 32306280 32306280 C T KIF5B Missense_Mutation p.R851H 0.12 tolerated(0.06) probably_damaging(0.925) TCGA-B7-5816-01 10 33137552 33137552 G A C10ORF68 Missense_Mutation p.M510I 0.04 tolerated(0.12) benign(0.003) TCGA-B7-5816-01 10 34759011 34759011 A G PARD3 Splice_Site p.X194_splice 0.08 TCGA-B7-5816-01 10 35495831 35495831 G T CREM Missense_Mutation p.G203C 0.08 deleterious(0.02) probably_damaging(0.997) TCGA-B7-5816-01 10 465046 465046 G A DIP2C Missense_Mutation p.A233V 0.20 tolerated(0.63) benign(0.017) TCGA-B7-5816-01 10 49419998 49419998 C A FRMPD2 Missense_Mutation p.R537M 0.14 deleterious(0) probably_damaging(0.968) TCGA-B7-5816-01 10 50594774 50594774 G - DRGX Frame_Shift_Del p.P127Lfs*22 0.10 TCGA-B7-5816-01 10 53457522 53457523 - G CSTF2T Frame_Shift_Ins p.E597* 0.11 TCGA-B7-5816-01 10 5437415 5437415 G A TUBAL3 Missense_Mutation p.R91C 0.07 deleterious_low_confidence(0.01) possibly_damaging(0.89) TCGA-B7-5816-01 10 5495290 5495290 T C NET1 Silent p.S224S 0.14 TCGA-B7-5816-01 10 5957467 5957467 C T FBXO18 Missense_Mutation p.R551C 0.11 deleterious(0.02) possibly_damaging(0.765) TCGA-B7-5816-01 10 63850705 63850705 A - ARID5B Frame_Shift_Del p.I497* 0.14 TCGA-B7-5816-01 10 64573280 64573280 C T EGR2 Missense_Mutation p.R373Q 0.11 deleterious(0) possibly_damaging(0.857) TCGA-B7-5816-01 10 6553148 6553148 G A PRKCQ Nonsense_Mutation p.Q43* 0.10 TCGA-B7-5816-01 10 70097575 70097575 A G HNRNPH3 Intron 0.10 TCGA-B7-5816-01 10 70645584 70645584 G A STOX1 Missense_Mutation p.V678M 0.08 tolerated(0.17) benign(0.033) TCGA-B7-5816-01 10 70949034 70949034 C T SUPV3L1 Missense_Mutation p.A195V 0.12 deleterious(0) probably_damaging(1) TCGA-B7-5816-01 10 71969022 71969022 T - PPA1 Frame_Shift_Del p.S222Afs*9 0.10 TCGA-B7-5816-01 10 74700992 74700992 C T PLA2G12B Missense_Mutation p.R134Q 0.13 tolerated(0.84) possibly_damaging(0.466) TCGA-B7-5816-01 10 75280778 75280778 A G USP54 Silent p.S790S 0.10 TCGA-B7-5816-01 10 75533122 75533122 C T FUT11 Missense_Mutation p.R295C 0.14 deleterious(0) probably_damaging(1) TCGA-B7-5816-01 10 75565362 75565362 G A NDST2 Nonsense_Mutation p.R577* 0.10 TCGA-B7-5816-01 10 76910318 76910318 G A SAMD8 Missense_Mutation p.R11H 0.14 tolerated(0.09) benign(0.009) TCGA-B7-5816-01 10 79778980 79778980 T - POLR3A Frame_Shift_Del p.N410Tfs*19 0.09 TCGA-B7-5816-01 10 87898605 87898605 G T GRID1 Missense_Mutation p.P233T 0.09 tolerated(0.29) possibly_damaging(0.871) TCGA-B7-5816-01 10 89717770 89717770 A - PTEN Frame_Shift_Del p.K267Rfs*9 0.17 TCGA-B7-5816-01 10 93749219 93749219 G A BTAF1 Silent p.T912T 0.14 TCGA-B7-5816-01 10 94834608 94834608 A G CYP26A1 Missense_Mutation p.S163G 0.11 tolerated(0.37) benign(0.021) TCGA-B7-5816-01 10 95790896 95790896 A G PLCE1 Silent p.E31E 0.16 TCGA-B7-5816-01 10 96084180 96084180 G T PLCE1 Missense_Mutation p.E2192D 0.11 deleterious(0) probably_damaging(0.999) TCGA-B7-5816-01 10 97135731 97135731 G A SORBS1 Missense_Mutation p.P579L 0.13 deleterious_low_confidence(0) benign(0.251) TCGA-B7-5816-01 10 97599483 97599483 A G ENTPD1 Silent p.T72T 0.11 TCGA-B7-5816-01 10 98064239 98064239 G A DNTT 5'UTR 0.09 TCGA-B7-5816-01 10 98362066 98362066 G - PIK3AP1 Frame_Shift_Del p.R778Gfs*33 0.23 TCGA-B7-5816-01 10 98469667 98469667 G A PIK3AP1 Silent p.T29T 0.09 TCGA-B7-5816-01 10 98820480 98820480 G A SLIT1 Silent p.C286C 0.22 TCGA-B7-5816-01 11 101353747 101353747 T - TRPC6 Frame_Shift_Del p.K481Nfs*6 0.10 TCGA-B7-5816-01 11 101937275 101937275 T - C11orf70 Frame_Shift_Del p.H112Ifs*19 0.09 TCGA-B7-5816-01 11 1025196 1025196 C T MUC6 Missense_Mutation p.A991T 0.10 unknown(0) TCGA-B7-5816-01 11 103057190 103057190 C T DYNC2H1 Nonsense_Mutation p.Q2285* 0.10 TCGA-B7-5816-01 11 103908380 103908380 A C DDI1 Missense_Mutation p.N277T 0.09 deleterious(0.02) probably_damaging(0.952) TCGA-B7-5816-01 11 10500212 10500212 A C AMPD3 Missense_Mutation p.T130P 0.10 tolerated(0.28) benign(0) TCGA-B7-5816-01 11 108004588 108004588 T - ACAT1 Frame_Shift_Del p.L56* 0.11 TCGA-B7-5816-01 11 111916693 111916693 A C DLAT Missense_Mutation p.K466T 0.24 tolerated(0.17) benign(0.016) TCGA-B7-5816-01 11 113699985 113699985 T - USP28 Frame_Shift_Del p.A333Pfs*16 0.09 TCGA-B7-5816-01 11 118376657 118376657 A G KMT2A Silent p.Q3350Q 0.13 TCGA-B7-5816-01 11 118498177 118498177 G A PHLDB1 Missense_Mutation p.G213D 0.10 tolerated(0.05) benign(0.224) TCGA-B7-5816-01 11 120008663 120008663 C T TRIM29 Missense_Mutation p.S26N 0.12 tolerated_low_confidence(1) benign(0) TCGA-B7-5816-01 11 120702712 120702712 C A GRIK4 Silent p.A221A 0.06 TCGA-B7-5816-01 11 121000373 121000373 T - TECTA Frame_Shift_Del p.F800Sfs*24 0.12 TCGA-B7-5816-01 11 121178116 121178116 G A SC5D Silent p.P265P 0.10 TCGA-B7-5816-01 11 121393396 121393398 CCT - SORL1 In_Frame_Del p.L503del 0.25 TCGA-B7-5816-01 11 122774913 122774913 C T C11orf63 Missense_Mutation p.P209S 0.06 tolerated(0.23) benign(0.005) TCGA-B7-5816-01 11 123504900 123504900 G A SCN3B Missense_Mutation p.A200V 0.10 deleterious(0.02) benign(0.335) TCGA-B7-5816-01 11 123601648 123601648 C - ZNF202 5'UTR 0.19 TCGA-B7-5816-01 11 123847769 123847769 C A OR10S1 Missense_Mutation p.E210D 0.17 deleterious(0.02) possibly_damaging(0.783) TCGA-B7-5816-01 11 126073382 126073382 G A RPUSD4 Silent p.R355R 0.14 TCGA-B7-5816-01 11 1261544 1261544 T G MUC5B Silent p.P1303P 0.09 TCGA-B7-5816-01 11 1629000 1629002 AGC - KRTAP5-3 In_Frame_Del p.C205del 0.08 TCGA-B7-5816-01 11 17415246 17415246 C T ABCC8 Missense_Mutation p.A1536T 0.17 tolerated(0.1) benign(0.387) TCGA-B7-5816-01 11 18955646 18955646 C G MRGPRX1 Missense_Mutation p.G229A 0.05 deleterious(0.04) possibly_damaging(0.665) TCGA-B7-5816-01 11 19077584 19077584 G A MRGPRX2 Silent p.T122T 0.23 TCGA-B7-5816-01 11 19251862 19251862 C A E2F8 Missense_Mutation p.Q428H 0.13 deleterious(0.04) possibly_damaging(0.67) TCGA-B7-5816-01 11 19256576 19256576 C T E2F8 Missense_Mutation p.V161M 0.17 tolerated(0.23) possibly_damaging(0.903) TCGA-B7-5816-01 11 20398193 20398193 G A HTATIP2 Missense_Mutation p.C158Y 0.08 deleterious(0) possibly_damaging(0.891) TCGA-B7-5816-01 11 20940864 20940864 C A NELL1 Missense_Mutation p.A248D 0.09 deleterious(0.03) probably_damaging(0.951) TCGA-B7-5816-01 11 2170496 2170496 C T INS-IGF2 Silent p.L89L 0.11 TCGA-B7-5816-01 11 2189856 2189857 - G TH Frame_Shift_Ins p.A149Rfs*69 0.23 TCGA-B7-5816-01 11 28104447 28104447 T C KIF18A Silent p.Q406Q 0.17 TCGA-B7-5816-01 11 3028185 3028185 A G CARS Silent p.P691P 0.12 TCGA-B7-5816-01 11 31287072 31287072 T - DCDC1 Frame_Shift_Del p.I346Lfs*14 0.10 TCGA-B7-5816-01 11 3249900 3249900 C T MRGPRE Missense_Mutation p.A43T 0.14 tolerated(0.41) benign(0.188) TCGA-B7-5816-01 11 32615494 32615494 A G EIF3M Missense_Mutation p.R206G 0.07 deleterious(0) possibly_damaging(0.603) TCGA-B7-5816-01 11 32616545 32616545 G A EIF3M Missense_Mutation p.E235K 0.12 deleterious(0.01) possibly_damaging(0.903) TCGA-B7-5816-01 11 32954322 32954322 T - QSER1 Frame_Shift_Del p.S379Lfs*7 0.10 TCGA-B7-5816-01 11 33163287 33163287 G A CSTF3 Missense_Mutation p.R51W 0.10 deleterious(0) possibly_damaging(0.455) TCGA-B7-5816-01 11 3423931 3423931 C A TSSC2 RNA 0.16 TCGA-B7-5816-01 11 36250790 36250790 G A LDLRAD3 Missense_Mutation p.R294H 0.08 deleterious_low_confidence(0.01) possibly_damaging(0.902) TCGA-B7-5816-01 11 3846621 3846621 C T PGAP2 Missense_Mutation p.T294M 0.14 deleterious(0) probably_damaging(0.97) TCGA-B7-5816-01 11 420541 420541 G T ANO9 Missense_Mutation p.L570I 0.26 tolerated(0.89) possibly_damaging(0.645) TCGA-B7-5816-01 11 428382 428382 C T ANO9 Missense_Mutation p.V400M 0.09 deleterious(0.01) possibly_damaging(0.737) TCGA-B7-5816-01 11 428757 428757 G A ANO9 Missense_Mutation p.R329C 0.08 deleterious(0.01) probably_damaging(0.97) TCGA-B7-5816-01 11 43876298 43876298 G A HSD17B12 Missense_Mutation p.A240T 0.13 tolerated(0.25) benign(0.035) TCGA-B7-5816-01 11 44253919 44253919 C T EXT2 Missense_Mutation p.P593L 0.14 deleterious(0) probably_damaging(0.995) TCGA-B7-5816-01 11 45204461 45204461 C - PRDM11 Frame_Shift_Del p.P93Rfs*40 0.13 TCGA-B7-5816-01 11 4790663 4790663 A C OR51F1 Missense_Mutation p.L162R 0.14 tolerated(0.12) probably_damaging(0.928) TCGA-B7-5816-01 11 48158582 48158582 T C PTPRJ Missense_Mutation p.V634A 0.11 tolerated(0.41) benign(0.256) TCGA-B7-5816-01 11 4903923 4903923 G A OR51T1 Missense_Mutation p.R292H 0.05 deleterious(0.02) benign(0.07) TCGA-B7-5816-01 11 5410819 5410819 A C OR51M1 Missense_Mutation p.N64T 0.05 tolerated(0.23) benign(0.002) TCGA-B7-5816-01 11 55135841 55135841 T C OR4A15 Missense_Mutation p.L161S 0.13 deleterious_low_confidence(0.04) benign(0.02) TCGA-B7-5816-01 11 5537570 5537570 T C UBQLNL Missense_Mutation p.I34M 0.12 deleterious(0.03) probably_damaging(0.915) TCGA-B7-5816-01 11 55406750 55406750 T C OR4P4 Missense_Mutation p.L306P 0.11 tolerated(0.14) benign(0.024) TCGA-B7-5816-01 11 55541814 55541814 A G OR5D13 Missense_Mutation p.N301D 0.12 tolerated(0.47) benign(0) TCGA-B7-5816-01 11 56230799 56230800 - A OR5M9 Frame_Shift_Ins p.V27Cfs*22 0.14 TCGA-B7-5816-01 11 5798944 5798944 T G OR52N5 Missense_Mutation p.K307N 0.24 deleterious(0) benign(0.078) TCGA-B7-5816-01 11 5799070 5799070 G T OR52N5 Missense_Mutation p.F265L 0.12 tolerated(0.95) benign(0.116) TCGA-B7-5816-01 11 59245321 59245321 A G OR4D10 Missense_Mutation p.H140R 0.08 tolerated(0.51) benign(0) TCGA-B7-5816-01 11 60565880 60565880 A G MS4A10 Silent p.A205A 0.11 TCGA-B7-5816-01 11 60687309 60687309 A C TMEM109 Missense_Mutation p.E48D 0.05 tolerated(0.24) benign(0.017) TCGA-B7-5816-01 11 61404639 61404639 C T RPLP0P2 RNA 0.11 TCGA-B7-5816-01 11 61562938 61562938 C A FEN1 Silent p.A35A 0.11 TCGA-B7-5816-01 11 62381819 62381819 A - ROM1 Frame_Shift_Del p.N228Tfs*88 0.15 TCGA-B7-5816-01 11 62406583 62406583 C A GANAB Splice_Site p.X85_splice 0.08 TCGA-B7-5816-01 11 6261352 6261352 G A CNGA4 Missense_Mutation p.V110I 0.12 tolerated(0.91) benign(0.006) TCGA-B7-5816-01 11 63970612 63970612 G A STIP1 Missense_Mutation p.R433Q 0.12 deleterious(0.01) possibly_damaging(0.85) TCGA-B7-5816-01 11 64662599 64662599 C - ATG2A Frame_Shift_Del p.G1888Afs*2 0.35 TCGA-B7-5816-01 11 64702216 64702216 C A GPHA2 3'UTR 0.22 TCGA-B7-5816-01 11 65144459 65144459 C T SLC25A45 Missense_Mutation p.R143Q 0.08 tolerated(0.47) benign(0.037) TCGA-B7-5816-01 11 65360998 65360998 C T KCNK7 Missense_Mutation p.G223S 0.19 tolerated(0.07) possibly_damaging(0.723) TCGA-B7-5816-01 11 65375502 65375502 C T MAP3K11 Silent p.V320V 0.07 TCGA-B7-5816-01 11 65746365 65746365 C A SART1 Silent p.G788G 0.14 TCGA-B7-5816-01 11 65824848 65824848 T C SF3B2 Splice_Site p.X259_splice 0.09 TCGA-B7-5816-01 11 66235631 66235631 C - PELI3 Frame_Shift_Del p.R13Efs*55 0.13 TCGA-B7-5816-01 11 6632238 6632238 C T TAF10 Missense_Mutation p.R191H 0.11 deleterious(0.04) benign(0.286) TCGA-B7-5816-01 11 6650800 6650800 C T DCHS1 Missense_Mutation p.G1682R 0.10 deleterious(0) probably_damaging(1) TCGA-B7-5816-01 11 67559667 67559667 T - FAM86C2P RNA 0.14 TCGA-B7-5816-01 11 6807156 6807156 G A OR2AG1 Silent p.E296E 0.11 TCGA-B7-5816-01 11 68192724 68192724 G A LRP5 Missense_Mutation p.A1131T 0.14 tolerated(0.18) benign(0.01) TCGA-B7-5816-01 11 68197061 68197061 G A LRP5 Missense_Mutation p.R1219H 0.12 tolerated(0.25) benign(0.006) TCGA-B7-5816-01 11 6866973 6866973 A G OR10A5 Silent p.L20L 0.03 TCGA-B7-5816-01 11 68704492 68704492 C T IGHMBP2 Silent p.P848P 0.15 TCGA-B7-5816-01 11 6942342 6942342 T C OR2D3 Missense_Mutation p.L37S 0.11 tolerated(0.11) benign(0.002) TCGA-B7-5816-01 11 71942235 71942235 T C INPPL1 Splice_Site p.X499_splice 0.07 TCGA-B7-5816-01 11 71944132 71944134 CTC - INPPL1 In_Frame_Del p.S656del 0.16 TCGA-B7-5816-01 11 73008170 73008170 C T P2RY6 Silent p.L203L 0.08 TCGA-B7-5816-01 11 75298700 75298700 C T MAP6 Missense_Mutation p.G616S 0.12 tolerated_low_confidence(0.13) benign(0) TCGA-B7-5816-01 11 75299206 75299206 T C MAP6 Missense_Mutation p.D447G 0.08 deleterious(0.04) benign(0.202) TCGA-B7-5816-01 11 7690880 7690880 T C CYB5R2 Silent p.R78R 0.11 TCGA-B7-5816-01 11 87029199 87029199 T C TMEM135 Silent p.I366I 0.15 TCGA-B7-5816-01 11 8752397 8752397 G T ST5 Missense_Mutation p.P147H 0.10 tolerated_low_confidence(0.15) benign(0.121) TCGA-B7-5816-01 11 88911703 88911703 C T TYR Silent p.I194I 0.19 TCGA-B7-5816-01 11 9090944 9090944 G A SCUBE2 Silent p.L206L 0.05 TCGA-B7-5816-01 11 94039838 94039839 - C FOLR4 Frame_Shift_Ins p.N102Kfs*29 0.16 TCGA-B7-5816-01 11 94231221 94231221 T - ANKRD49 Intron 0.15 TCGA-B7-5816-01 12 105198777 105198777 A - SLC41A2 3'UTR 0.22 TCGA-B7-5816-01 12 108004005 108004005 C T BTBD11 Missense_Mutation p.A561V 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-B7-5816-01 12 110353251 110353251 A C TCHP Missense_Mutation p.E455A 0.09 tolerated(0.51) benign(0.005) TCGA-B7-5816-01 12 110924425 110924426 GA - FAM216A Frame_Shift_Del p.E177Gfs*6 0.11 TCGA-B7-5816-01 12 112321467 112321467 G A MAPKAPK5 Missense_Mutation p.R248Q 0.09 tolerated(0.4) benign(0.167) TCGA-B7-5816-01 12 112590688 112590689 GA - TRAFD1 3'UTR 0.18 TCGA-B7-5816-01 12 112926270 112926270 C T PTPN11 Missense_Mutation p.T468M 0.09 deleterious(0) probably_damaging(0.941) TCGA-B7-5816-01 12 113435331 113435331 A - OAS2 Frame_Shift_Del p.I214Sfs*41 0.14 TCGA-B7-5816-01 12 113515274 113515274 C T DTX1 Missense_Mutation p.A102V 0.17 deleterious(0.04) benign(0.015) TCGA-B7-5816-01 12 117204721 117204721 T C RNFT2 Splice_Site p.X243_splice 0.17 TCGA-B7-5816-01 12 121858580 121858580 C A RNF34 Silent p.S310S 0.14 TCGA-B7-5816-01 12 122684857 122684857 G A LRRC43 Missense_Mutation p.V491M 0.14 deleterious(0) probably_damaging(0.981) TCGA-B7-5816-01 12 122685346 122685346 C - LRRC43 Frame_Shift_Del p.I561Sfs*10 0.20 TCGA-B7-5816-01 12 123105091 123105091 C T KNTC1 Missense_Mutation p.P2072L 0.13 deleterious(0.04) probably_damaging(0.999) TCGA-B7-5816-01 12 123214587 123214587 G A HCAR1 Silent p.A100A 0.15 TCGA-B7-5816-01 12 124326065 124326065 T - DNAH10 Frame_Shift_Del p.F1661Lfs*48 0.12 TCGA-B7-5816-01 12 124821440 124821440 C T NCOR2 Missense_Mutation p.A1992T 0.13 benign(0.054) TCGA-B7-5816-01 12 12618589 12618589 G A LOH12CR1 Missense_Mutation p.R157H 0.15 deleterious(0.01) benign(0.41) TCGA-B7-5816-01 12 129293942 129293942 G A SLC15A4 Missense_Mutation p.T363M 0.11 deleterious(0.02) probably_damaging(0.945) TCGA-B7-5816-01 12 130648814 130648814 C T FZD10 Missense_Mutation p.R443C 0.12 deleterious(0) probably_damaging(0.999) TCGA-B7-5816-01 12 131490544 131490544 A G GPR133 Missense_Mutation p.Y428C 0.13 deleterious(0) probably_damaging(0.999) TCGA-B7-5816-01 12 132472386 132472386 C A EP400 Missense_Mutation p.A787D 0.13 unknown(0) TCGA-B7-5816-01 12 132490715 132490715 G A EP400 Silent p.S998S 0.14 TCGA-B7-5816-01 12 132625272 132625272 G A DDX51 Silent p.Y483Y 0.16 TCGA-B7-5816-01 12 14613758 14613758 A - ATF7IP Frame_Shift_Del p.N831Ifs*79 0.11 TCGA-B7-5816-01 12 14631255 14631256 - A ATF7IP Frame_Shift_Ins p.L985Tfs*110 0.15 TCGA-B7-5816-01 12 15776135 15776135 G A EPS8 Missense_Mutation p.A771V 0.12 tolerated(0.16) benign(0.159) TCGA-B7-5816-01 12 22005084 22005084 G T ABCC9 Missense_Mutation p.L906I 0.15 deleterious(0.04) probably_damaging(0.976) TCGA-B7-5816-01 12 22354742 22354742 C T ST8SIA1 Missense_Mutation p.R272H 0.11 deleterious(0) probably_damaging(1) TCGA-B7-5816-01 12 23757415 23757415 A C SOX5 Missense_Mutation p.L357R 0.10 tolerated(0.63) benign(0.022) TCGA-B7-5816-01 12 27156306 27156306 C T TM7SF3 Missense_Mutation p.V37M 0.09 tolerated(0.17) benign(0.012) TCGA-B7-5816-01 12 42499688 42499688 C A GXYLT1 Nonsense_Mutation p.G266* 0.20 TCGA-B7-5816-01 12 44177520 44177520 A C IRAK4 Missense_Mutation p.Q394P 0.10 tolerated(0.05) benign(0.095) TCGA-B7-5816-01 12 45173737 45173737 C T NELL2 Missense_Mutation p.R185H 0.10 tolerated(0.12) benign(0.01) TCGA-B7-5816-01 12 48367873 48367873 G A COL2A1 Missense_Mutation p.T1439M 0.20 unknown(0) TCGA-B7-5816-01 12 49110337 49110337 G A CCNT1 Missense_Mutation p.A41V 0.05 deleterious(0) possibly_damaging(0.899) TCGA-B7-5816-01 12 49170889 49170889 G A ADCY6 Silent p.I458I 0.10 TCGA-B7-5816-01 12 49445987 49445987 G A KMT2D Silent p.P493P 0.09 TCGA-B7-5816-01 12 50036136 50036136 T C PRPF40B Missense_Mutation p.L668P 0.11 tolerated(0.27) benign(0.009) TCGA-B7-5816-01 12 5021148 5021148 G A KCNA1 Missense_Mutation p.V202I 0.18 tolerated(0.52) benign(0) TCGA-B7-5816-01 12 50528418 50528418 T C CERS5 Missense_Mutation p.N314D 0.07 deleterious(0.02) probably_damaging(0.978) TCGA-B7-5816-01 12 51319130 51319130 T C METTL7A Silent p.F103F 0.19 TCGA-B7-5816-01 12 51634178 51634178 T C DAZAP2 Missense_Mutation p.V22A 0.08 tolerated_low_confidence(0.1) probably_damaging(0.985) TCGA-B7-5816-01 12 52639292 52639292 C A KRT7 Missense_Mutation p.L361M 0.12 deleterious(0.02) probably_damaging(1) TCGA-B7-5816-01 12 52979783 52979783 T G KRT72 Missense_Mutation p.K507Q 0.13 tolerated_low_confidence(0.07) benign(0.424) TCGA-B7-5816-01 12 53453399 53453399 G - TENC1 Frame_Shift_Del p.K670Nfs*96 0.19 TCGA-B7-5816-01 12 53671679 53671679 C T ESPL1 Missense_Mutation p.R767W 0.11 deleterious(0) probably_damaging(0.999) TCGA-B7-5816-01 12 53680370 53680370 A G ESPL1 Missense_Mutation p.T1284A 0.06 tolerated(0.37) benign(0.005) TCGA-B7-5816-01 12 53683934 53683934 C T ESPL1 Silent p.L1727L 0.14 TCGA-B7-5816-01 12 53701679 53701679 G - AAAS Frame_Shift_Del p.Q456Sfs*95 0.13 TCGA-B7-5816-01 12 56347164 56347164 C T DGKA Silent p.D698D 0.12 TCGA-B7-5816-01 12 56362617 56362617 T C CDK2 Missense_Mutation p.L124P 0.10 deleterious(0) probably_damaging(0.999) TCGA-B7-5816-01 12 56437254 56437254 C - RPS26 Frame_Shift_Del p.P98Hfs*24 0.12 TCGA-B7-5816-01 12 56827603 56827603 G T TIMELESS Missense_Mutation p.L69I 0.07 tolerated(0.35) benign(0.268) TCGA-B7-5816-01 12 57106630 57106630 C A NACA Silent p.S901S 0.06 TCGA-B7-5816-01 12 57351342 57351342 A G RDH16 5'UTR 0.10 TCGA-B7-5816-01 12 57566979 57566979 T C LRP1 Silent p.T1064T 0.09 TCGA-B7-5816-01 12 57648506 57648506 C A R3HDM2 3'UTR 0.19 TCGA-B7-5816-01 12 57652728 57652728 A G R3HDM2 Missense_Mutation p.M735T 0.10 tolerated(0.57) benign(0.021) TCGA-B7-5816-01 12 58114666 58114666 G A OS9 Missense_Mutation p.G660R 0.14 deleterious(0) possibly_damaging(0.824) TCGA-B7-5816-01 12 62786091 62786091 A - USP15 Frame_Shift_Del p.K783Nfs*4 0.12 TCGA-B7-5816-01 12 62786960 62786960 A G USP15 Missense_Mutation p.T850A 0.04 tolerated(0.11) benign(0.367) TCGA-B7-5816-01 12 62861070 62861070 G A MON2 Missense_Mutation p.C28Y 0.09 deleterious(0) possibly_damaging(0.879) TCGA-B7-5816-01 12 64456869 64456869 C T SRGAP1 Missense_Mutation p.A325V 0.04 tolerated(0.73) benign(0.014) TCGA-B7-5816-01 12 64678530 64678530 T C C12orf56 Silent p.A248A 0.16 TCGA-B7-5816-01 12 66731962 66731962 A - HELB 3'UTR 0.22 TCGA-B7-5816-01 12 6692236 6692236 C A CHD4 Silent p.V1368V 0.10 TCGA-B7-5816-01 12 70206762 70206762 T - RAB3IP Frame_Shift_Del p.F434Lfs*12 0.11 TCGA-B7-5816-01 12 7046278 7046278 G A ATN1 Silent p.T616T 0.09 TCGA-B7-5816-01 12 7173936 7173936 A G C1S Missense_Mutation p.E329G 0.06 deleterious(0.03) benign(0.259) TCGA-B7-5816-01 12 7649572 7649572 G A CD163 Silent p.A312A 0.09 TCGA-B7-5816-01 12 77252786 77252786 C T CSRP2 Silent p.G176G 0.10 TCGA-B7-5816-01 12 78582508 78582508 T A NAV3 Silent p.P1980P 0.08 TCGA-B7-5816-01 12 81769649 81769649 C T PPFIA2 Missense_Mutation p.E353K 0.14 deleterious(0) possibly_damaging(0.844) TCGA-B7-5816-01 12 8212287 8212287 A G C3AR1 Silent p.T165T 0.12 TCGA-B7-5816-01 12 85441250 85441250 T C LRRIQ1 Splice_Site p.X226_splice 0.10 TCGA-B7-5816-01 12 86373330 86373330 T - MGAT4C Frame_Shift_Del p.I392Lfs*3 0.10 TCGA-B7-5816-01 12 8902584 8902584 G A RIMKLB Missense_Mutation p.R101Q 0.13 tolerated(0.13) benign(0.084) TCGA-B7-5816-01 12 8926159 8926159 C T RIMKLB Missense_Mutation p.R314W 0.19 deleterious_low_confidence(0.02) possibly_damaging(0.556) TCGA-B7-5816-01 12 9246162 9246162 C T A2M Missense_Mutation p.M713I 0.14 tolerated(0.44) benign(0) TCGA-B7-5816-01 12 98921765 98921765 C T TMPO Silent p.Y127Y 0.06 TCGA-B7-5816-01 13 101733934 101733934 C T NALCN Missense_Mutation p.D1277N 0.11 deleterious(0) probably_damaging(0.999) TCGA-B7-5816-01 13 109535430 109535430 C A MYO16 Silent p.S461S 0.23 TCGA-B7-5816-01 13 113909114 113909114 T C CUL4A Splice_Site p.X620_splice 0.11 TCGA-B7-5816-01 13 21742240 21742240 C A SKA3 Missense_Mutation p.M210I 0.08 deleterious(0) probably_damaging(0.992) TCGA-B7-5816-01 13 23913780 23913780 A G SACS Missense_Mutation p.L1412P 0.13 probably_damaging(0.999) TCGA-B7-5816-01 13 25370393 25370393 T C RNF17 Silent p.N453N 0.11 TCGA-B7-5816-01 13 28240022 28240022 G A POLR1D Missense_Mutation p.A101T 0.12 tolerated_low_confidence(0.73) benign(0.003) TCGA-B7-5816-01 13 31232078 31232078 A C USPL1 Missense_Mutation p.T622P 0.12 tolerated(0.1) possibly_damaging(0.655) TCGA-B7-5816-01 13 31498632 31498632 G - MEDAG 3'UTR 0.12 TCGA-B7-5816-01 13 33315227 33315227 A - PDS5B Frame_Shift_Del p.K807Rfs*25 0.10 TCGA-B7-5816-01 13 37679304 37679304 G A CSNK1A1L Silent p.D30D 0.19 TCGA-B7-5816-01 13 38211583 38211583 A - TRPC4 Frame_Shift_Del p.F802Lfs*3 0.12 TCGA-B7-5816-01 13 39585610 39585610 C A PROSER1 Silent p.S909S 0.12 TCGA-B7-5816-01 13 39608303 39608303 T C PROSER1 Missense_Mutation p.I26V 0.05 deleterious(0.02) possibly_damaging(0.703) TCGA-B7-5816-01 13 39613801 39613801 C T NHLRC3 Missense_Mutation p.A113V 0.09 tolerated(0.17) benign(0.015) TCGA-B7-5816-01 13 45148680 45148680 C T TSC22D1 Missense_Mutation p.A511T 0.11 tolerated(0.34) benign(0.002) TCGA-B7-5816-01 13 49039361 49039361 A G RB1 Missense_Mutation p.I782M 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-B7-5816-01 13 49084844 49084844 C T RCBTB2 Missense_Mutation p.A283T 0.15 deleterious(0.04) benign(0.072) TCGA-B7-5816-01 13 50065970 50065970 A - SETDB2 Frame_Shift_Del p.I718Yfs*11 0.10 TCGA-B7-5816-01 13 52952823 52952823 T C THSD1 Missense_Mutation p.I428V 0.08 tolerated(1) benign(0.001) TCGA-B7-5816-01 13 58208600 58208600 G A PCDH17 Silent p.P640P 0.06 TCGA-B7-5816-01 13 67800109 67800109 C T PCDH9 Missense_Mutation p.G822S 0.11 deleterious(0) probably_damaging(0.992) TCGA-B7-5816-01 13 67801921 67801921 A G PCDH9 Missense_Mutation p.Y218H 0.10 deleterious(0) probably_damaging(0.997) TCGA-B7-5816-01 13 88329745 88329745 G A SLITRK5 Missense_Mutation p.S701N 0.14 tolerated(0.3) benign(0.028) TCGA-B7-5816-01 13 99047705 99047705 A G FARP1 Silent p.K463K 0.07 TCGA-B7-5816-01 13 99092237 99092237 G - FARP1 Frame_Shift_Del p.V821Cfs*5 0.20 TCGA-B7-5816-01 14 102675303 102675304 - TG WDR20 Frame_Shift_Ins p.W301Afs*10 0.09 TCGA-B7-5816-01 14 102880991 102880991 C T TECPR2 Silent p.L167L 0.09 TCGA-B7-5816-01 14 102912238 102912238 G T TECPR2 Missense_Mutation p.G1010V 0.22 deleterious(0) probably_damaging(1) TCGA-B7-5816-01 14 105174896 105174896 C - INF2 Frame_Shift_Del p.R622Gfs*18 0.32 TCGA-B7-5816-01 14 105225903 105225903 C T SIVA1 3'UTR 0.38 TCGA-B7-5816-01 14 105935825 105935825 C T MTA1 Missense_Mutation p.A612V 0.10 tolerated(0.49) benign(0) TCGA-B7-5816-01 14 20443857 20443857 A G OR4K15 Silent p.L60L 0.12 TCGA-B7-5816-01 14 21883898 21883898 T C CHD8 Missense_Mutation p.M629V 0.06 tolerated(0.19) benign(0.004) TCGA-B7-5816-01 14 22102296 22102296 T C OR10G2 Missense_Mutation p.T235A 0.09 tolerated(0.05) possibly_damaging(0.852) TCGA-B7-5816-01 14 22363074 22363074 T C TRAV8-4 Missense_Mutation p.Y69H 0.12 tolerated(0.3) benign(0.121) TCGA-B7-5816-01 14 23243598 23243598 G A SLC7A7 Missense_Mutation p.R404C 0.12 deleterious(0) probably_damaging(0.999) TCGA-B7-5816-01 14 23374315 23374315 T C RBM23 Silent p.V238V 0.14 TCGA-B7-5816-01 14 23793252 23793252 G A PABPN1 Silent p.R240R 0.08 TCGA-B7-5816-01 14 23853710 23853710 C T MYH6 Missense_Mutation p.A1836T 0.10 tolerated(0.18) benign(0.008) TCGA-B7-5816-01 14 23898214 23898214 G A MYH7 Missense_Mutation p.R453C 0.05 deleterious(0) probably_damaging(0.999) TCGA-B7-5816-01 14 24780927 24780927 G A LTB4R2 Missense_Mutation p.G353S 0.19 tolerated(0.84) benign(0) TCGA-B7-5816-01 14 24884853 24884853 C T NYNRIN Missense_Mutation p.P1300S 0.10 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-B7-5816-01 14 25075943 25075943 C T GZMH Missense_Mutation p.G203R 0.06 deleterious(0.02) probably_damaging(0.987) TCGA-B7-5816-01 14 25101617 25101617 C T GZMB Silent p.P84P 0.12 TCGA-B7-5816-01 14 35736064 35736064 T - KIAA0391 Frame_Shift_Del p.F471Lfs*30 0.12 TCGA-B7-5816-01 14 45433605 45433605 T C FAM179B Missense_Mutation p.W661R 0.10 deleterious(0) probably_damaging(0.991) TCGA-B7-5816-01 14 55817461 55817461 A - FBXO34 Frame_Shift_Del p.I120Lfs*13 0.13 TCGA-B7-5816-01 14 58060660 58060660 A T SLC35F4 Missense_Mutation p.S132T 0.09 tolerated(0.2) benign(0.012) TCGA-B7-5816-01 14 58915174 58915174 T C KIAA0586 Silent p.C361C 0.07 TCGA-B7-5816-01 14 60213155 60213155 T C RTN1 Missense_Mutation p.T96A 0.08 tolerated(0.69) benign(0.002) TCGA-B7-5816-01 14 62213706 62213706 T C HIF1A Missense_Mutation p.L819P 0.05 deleterious(0) probably_damaging(1) TCGA-B7-5816-01 14 62242911 62242911 T - SNAPC1 Frame_Shift_Del p.F213Lfs*7 0.20 TCGA-B7-5816-01 14 64606785 64606785 T - SYNE2 Frame_Shift_Del p.F4992Lfs*13 0.16 TCGA-B7-5816-01 14 68249834 68249834 C T ZFYVE26 Silent p.V1345V 0.11 TCGA-B7-5816-01 14 69369233 69369233 G A ACTN1 Silent p.Y241Y 0.12 TCGA-B7-5816-01 14 70237203 70237203 G A SRSF5 Missense_Mutation p.R129K 0.07 deleterious(0.01) possibly_damaging(0.893) TCGA-B7-5816-01 14 71570279 71570280 - C PCNX Frame_Shift_Ins p.L1998Pfs*7 0.16 TCGA-B7-5816-01 14 72202008 72202008 T - SIPA1L1 Frame_Shift_Del p.F1697Lfs*11 0.13 TCGA-B7-5816-01 14 75514620 75514623 TCTG - MLH3 Frame_Shift_Del p.T579Rfs*30 0.15 TCGA-B7-5816-01 14 76928919 76928919 C T ESRRB Silent p.N143N 0.16 TCGA-B7-5816-01 14 77255720 77255720 A G ANGEL1 Missense_Mutation p.Y622H 0.11 tolerated(0.29) benign(0.012) TCGA-B7-5816-01 14 77951252 77951252 G A ISM2 Missense_Mutation p.S51F 0.11 tolerated_low_confidence(0.12) probably_damaging(0.962) TCGA-B7-5816-01 14 81382887 81382887 G T CEP128 Missense_Mutation p.A2E 0.15 deleterious_low_confidence(0.01) benign(0.165) TCGA-B7-5816-01 14 81737109 81737109 T C STON2 Missense_Mutation p.T840A 0.16 tolerated(0.49) benign(0.197) TCGA-B7-5816-01 14 89154773 89154773 T C EML5 Missense_Mutation p.K862E 0.10 tolerated(0.17) benign(0.084) TCGA-B7-5816-01 14 89747302 89747302 A C FOXN3 Missense_Mutation p.L246R 0.16 tolerated(0.19) probably_damaging(0.999) TCGA-B7-5816-01 14 90726465 90726465 A - PSMC1 Frame_Shift_Del p.K23Rfs*30 0.08 TCGA-B7-5816-01 14 91252559 91252559 G A TTC7B Missense_Mutation p.R79C 0.18 deleterious(0) possibly_damaging(0.667) TCGA-B7-5816-01 14 91937310 91937310 G A SMEK1 Missense_Mutation p.L498F 0.11 deleterious(0.01) probably_damaging(0.986) TCGA-B7-5816-01 15 101528930 101528930 G A LRRK1 Silent p.T175T 0.09 TCGA-B7-5816-01 15 22969309 22969309 G T CYFIP1 Missense_Mutation p.W845C 0.11 deleterious(0) probably_damaging(0.992) TCGA-B7-5816-01 15 23931620 23931620 G A NDN Missense_Mutation p.R249C 0.11 deleterious(0) probably_damaging(0.967) TCGA-B7-5816-01 15 25315599 25315599 A - SNORD116-8 RNA 0.11 TCGA-B7-5816-01 15 25925050 25925050 T G ATP10A Missense_Mutation p.K1313T 0.16 tolerated(0.55) benign(0.037) TCGA-B7-5816-01 15 30003035 30003035 C A TJP1 Missense_Mutation p.G1458C 0.10 deleterious_low_confidence(0.03) benign(0.009) TCGA-B7-5816-01 15 31239370 31239370 A G MTMR10 Missense_Mutation p.L504P 0.14 deleterious(0) probably_damaging(0.977) TCGA-B7-5816-01 15 35224614 35224614 A C AQR Missense_Mutation p.W269G 0.08 deleterious(0) benign(0.247) TCGA-B7-5816-01 15 40056054 40056054 A - FSIP1 Frame_Shift_Del p.L176Yfs*3 0.10 TCGA-B7-5816-01 15 40309416 40309416 C T EIF2AK4 Silent p.L1346L 0.23 TCGA-B7-5816-01 15 40685797 40685799 AAG - KNSTRN Missense_Mutation 0.28 TCGA-B7-5816-01 15 40751732 40751732 A C BAHD1 Missense_Mutation p.M357L 0.26 tolerated(0.2) benign(0) TCGA-B7-5816-01 15 41346200 41346200 C T INO80 Missense_Mutation p.R734H 0.10 deleterious(0) probably_damaging(1) TCGA-B7-5816-01 15 42032304 42032304 T G MGA Silent p.P1496P 0.19 TCGA-B7-5816-01 15 42133102 42133102 A G PLA2G4B Missense_Mutation p.Q348R 0.13 deleterious(0.04) benign(0.04) TCGA-B7-5816-01 15 42155999 42155999 C T SPTBN5 Missense_Mutation p.G2351D 0.07 benign(0.163) TCGA-B7-5816-01 15 42167136 42167136 C T SPTBN5 Missense_Mutation p.R1469Q 0.11 benign(0.001) TCGA-B7-5816-01 15 42652149 42652149 G A CAPN3 Missense_Mutation p.R49H 0.09 deleterious(0) probably_damaging(0.999) TCGA-B7-5816-01 15 43500967 43500967 C T EPB42 Missense_Mutation p.R310Q 0.12 deleterious(0) probably_damaging(1) TCGA-B7-5816-01 15 43620632 43620632 G A LCMT2 Nonsense_Mutation p.Q686* 0.10 TCGA-B7-5816-01 15 43784282 43784282 G T TP53BP1 Silent p.S68S 0.06 TCGA-B7-5816-01 15 44068067 44068069 AAT - ELL3 In_Frame_Del p.I112del 0.14 TCGA-B7-5816-01 15 45661663 45661663 A G GATM Silent p.F115F 0.12 TCGA-B7-5816-01 15 52515817 52515817 T C MYO5C Missense_Mutation p.Q1184R 0.15 tolerated(0.53) possibly_damaging(0.703) TCGA-B7-5816-01 15 52548869 52548869 G A MYO5C Silent p.Y454Y 0.09 TCGA-B7-5816-01 15 54305975 54305975 G A UNC13C Missense_Mutation p.R292H 0.11 deleterious_low_confidence(0.03) probably_damaging(0.998) TCGA-B7-5816-01 15 55647053 55647053 A - PIGB Frame_Shift_Del p.S467Vfs*12 0.20 TCGA-B7-5816-01 15 57929928 57929928 T C GCOM1 Silent p.H323H 0.16 TCGA-B7-5816-01 15 63084970 63084970 G A TLN2 Missense_Mutation p.R1956H 0.12 deleterious(0.02) probably_damaging(0.915) TCGA-B7-5816-01 15 63908706 63908706 C T HERC1 Missense_Mutation p.D4622N 0.09 probably_damaging(0.999) TCGA-B7-5816-01 15 65108840 65108840 G A PIF1 Missense_Mutation p.A600V 0.08 tolerated(1) benign(0.004) TCGA-B7-5816-01 15 70350533 70350533 G A TLE3 Missense_Mutation p.S339L 0.08 tolerated(0.24) benign(0) TCGA-B7-5816-01 15 73541965 73541966 - A NEO1 Frame_Shift_Ins p.Y602Ifs*5 0.12 TCGA-B7-5816-01 15 74427112 74427112 C T ISLR2 Nonsense_Mutation p.Q673* 0.17 TCGA-B7-5816-01 15 74708310 74708310 T C SEMA7A Missense_Mutation p.E273G 0.12 tolerated(0.15) possibly_damaging(0.603) TCGA-B7-5816-01 15 75091756 75091756 A G CSK Missense_Mutation p.Y129C 0.14 deleterious(0) probably_damaging(1) TCGA-B7-5816-01 15 75094391 75094393 CTA - CSK In_Frame_Del p.Y380del 0.10 TCGA-B7-5816-01 15 75648662 75648662 C T MAN2C1 Missense_Mutation p.V973I 0.26 tolerated(0.56) benign(0.047) TCGA-B7-5816-01 15 77425370 77425370 G A PEAK1 Missense_Mutation p.P1352S 0.14 deleterious(0.04) probably_damaging(0.999) TCGA-B7-5816-01 15 81234237 81234237 C A KIAA1199 Missense_Mutation p.A1152D 0.07 tolerated(0.09) probably_damaging(0.999) TCGA-B7-5816-01 15 81633756 81633756 G - TMC3 Frame_Shift_Del p.H607Tfs*40 0.11 TCGA-B7-5816-01 15 83218321 83218321 C T CPEB1 Missense_Mutation p.G430S 0.09 deleterious(0) probably_damaging(0.999) TCGA-B7-5816-01 15 83657727 83657727 T - C15orf40 3'Flank 0.16 TCGA-B7-5816-01 15 83805311 83805312 - T TM6SF1 Frame_Shift_Ins p.L336Ffs*46 0.10 TCGA-B7-5816-01 15 86311755 86311755 G - KLHL25 Frame_Shift_Del p.L430Cfs*11 0.21 TCGA-B7-5816-01 15 91354482 91354482 G A BLM Missense_Mutation p.G1308R 0.08 tolerated(0.31) benign(0.009) TCGA-B7-5816-01 15 91769808 91769808 C T SV2B Silent p.G105G 0.10 TCGA-B7-5816-01 15 99678208 99678208 G - TTC23 3'UTR 0.09 TCGA-B7-5816-01 16 11154783 11154783 C T CLEC16A Missense_Mutation p.R674C 0.12 deleterious(0) probably_damaging(1) TCGA-B7-5816-01 16 1129609 1129609 G A SSTR5 Silent p.T247T 0.09 TCGA-B7-5816-01 16 11933734 11933734 C T RSL1D1 Missense_Mutation p.A322T 0.13 tolerated(0.1) benign(0.007) TCGA-B7-5816-01 16 1395285 1395285 C - BAIAP3 Frame_Shift_Del p.F696Sfs*5 0.14 TCGA-B7-5816-01 16 14038694 14038694 T C ERCC4 Splice_Site p.X673_splice 0.11 TCGA-B7-5816-01 16 15841536 15841536 T - MYH11 Frame_Shift_Del p.I775Sfs*11 0.10 TCGA-B7-5816-01 16 16244625 16244625 C A ABCC6 Missense_Mutation p.G1405C 0.14 deleterious(0) probably_damaging(0.999) TCGA-B7-5816-01 16 18593737 18593737 C T ABCC6P1 RNA 0.17 TCGA-B7-5816-01 16 18853038 18853038 C T SMG1 Missense_Mutation p.R2182H 0.10 deleterious(0.02) possibly_damaging(0.703) TCGA-B7-5816-01 16 19501744 19501744 T - TMC5 Frame_Shift_Del p.R869Efs*17 0.13 TCGA-B7-5816-01 16 2026090 2026090 G T TBL3 Missense_Mutation p.G388V 0.09 deleterious(0) probably_damaging(0.998) TCGA-B7-5816-01 16 20373875 20373875 G A PDILT Silent p.L423L 0.10 TCGA-B7-5816-01 16 22314269 22314269 C T POLR3E 5'UTR 0.08 TCGA-B7-5816-01 16 23713786 23713786 G A ERN2 Nonsense_Mutation p.R384* 0.14 TCGA-B7-5816-01 16 25258237 25258237 T C ZKSCAN2 Missense_Mutation p.N427S 0.08 tolerated(0.72) possibly_damaging(0.621) TCGA-B7-5816-01 16 27539961 27539961 G A GTF3C1 Nonsense_Mutation p.Q311* 0.13 TCGA-B7-5816-01 16 27751547 27751547 C A KIAA0556 Silent p.T643T 0.13 TCGA-B7-5816-01 16 29998312 29998312 G A TAOK2 Missense_Mutation p.E907K 0.15 deleterious_low_confidence(0.01) benign(0.022) TCGA-B7-5816-01 16 30392561 30392561 G A SEPT1 Missense_Mutation p.R154W 0.18 possibly_damaging(0.855) TCGA-B7-5816-01 16 31004510 31004510 C T STX1B Missense_Mutation p.V243M 0.14 deleterious(0) probably_damaging(0.978) TCGA-B7-5816-01 16 31885181 31885181 C A ZNF267 5'UTR 0.17 TCGA-B7-5816-01 16 33647530 33647530 C T RP11-812E19.9 Missense_Mutation p.V24M 0.10 deleterious_low_confidence(0.03) possibly_damaging(0.866) TCGA-B7-5816-01 16 3632656 3632656 G A SLX4 Missense_Mutation p.A1731V 0.21 tolerated(0.13) benign(0.073) TCGA-B7-5816-01 16 3633383 3633383 G A SLX4 Missense_Mutation p.A1623V 0.10 tolerated(0.37) benign(0.009) TCGA-B7-5816-01 16 3647657 3647657 G - SLX4 Frame_Shift_Del p.P469Hfs*4 0.13 TCGA-B7-5816-01 16 3716054 3716054 G A TRAP1 Missense_Mutation p.A434V 0.25 deleterious(0.03) benign(0.008) TCGA-B7-5816-01 16 3778795 3778795 G A CREBBP Nonsense_Mutation p.Q2085* 0.19 TCGA-B7-5816-01 16 4723611 4723611 C T MGRN1 Missense_Mutation p.A303V 0.10 deleterious(0) possibly_damaging(0.875) TCGA-B7-5816-01 16 4947716 4947716 C T PPL Missense_Mutation p.C311Y 0.12 deleterious(0) benign(0.047) TCGA-B7-5816-01 16 50256229 50256229 T A PAPD5 Missense_Mutation p.L336M 0.08 deleterious(0.01) probably_damaging(0.94) TCGA-B7-5816-01 16 50343556 50343556 C T ADCY7 Missense_Mutation p.P720L 0.26 deleterious(0.05) benign(0.003) TCGA-B7-5816-01 16 5058571 5058571 C T SEC14L5 Silent p.I574I 0.11 TCGA-B7-5816-01 16 51175243 51175243 G A SALL1 Missense_Mutation p.A297V 0.28 tolerated(0.33) probably_damaging(0.997) TCGA-B7-5816-01 16 54967668 54967668 C T IRX5 Silent p.T445T 0.07 TCGA-B7-5816-01 16 55600639 55600639 G A CAPNS2 5'UTR 0.08 TCGA-B7-5816-01 16 57416256 57416257 - C CX3CL1 Frame_Shift_Ins p.T172Dfs*41 0.18 TCGA-B7-5816-01 16 57760152 57760152 G A CCDC135 Missense_Mutation p.G644D 0.05 tolerated(0.09) possibly_damaging(0.601) TCGA-B7-5816-01 16 57931415 57931415 G A CNGB1 Missense_Mutation p.T1043M 0.11 deleterious(0) probably_damaging(0.995) TCGA-B7-5816-01 16 58324876 58324876 C T PRSS54 Missense_Mutation p.A84T 0.09 tolerated(0.5) benign(0.173) TCGA-B7-5816-01 16 58551980 58551980 A G SETD6 Missense_Mutation p.Q273R 0.09 tolerated(0.92) benign(0.009) TCGA-B7-5816-01 16 61935244 61935244 T - CDH8 Frame_Shift_Del p.K129Rfs*6 0.12 TCGA-B7-5816-01 16 64981565 64981565 G T CDH11 Missense_Mutation p.R778S 0.09 deleterious(0.02) probably_damaging(0.999) TCGA-B7-5816-01 16 66592116 66592117 - T CKLF Frame_Shift_Ins p.I37Yfs*7 0.12 TCGA-B7-5816-01 16 66764114 66764114 C A DYNC1LI2 Missense_Mutation p.W314C 0.07 deleterious(0) probably_damaging(0.956) TCGA-B7-5816-01 16 66944197 66944197 C T CDH16 Silent p.T711T 0.08 TCGA-B7-5816-01 16 67289730 67289730 C T SLC9A5 Missense_Mutation p.R270C 0.14 deleterious(0) probably_damaging(0.999) TCGA-B7-5816-01 16 67572574 67572574 G A FAM65A Splice_Site p.X55_splice 0.08 TCGA-B7-5816-01 16 67650676 67650676 C T CTCF Silent p.C327C 0.13 TCGA-B7-5816-01 16 67976822 67976822 G A LCAT Silent p.R123R 0.10 TCGA-B7-5816-01 16 67988673 67988673 C A SLC12A4 Missense_Mutation p.G185V 0.14 deleterious(0) probably_damaging(1) TCGA-B7-5816-01 16 68679246 68679246 C T CDH3 5'UTR 0.27 TCGA-B7-5816-01 16 68901094 68901094 T C TANGO6 Missense_Mutation p.V322A 0.08 deleterious(0.01) benign(0.103) TCGA-B7-5816-01 16 69959368 69959368 C - WWP2 Frame_Shift_Del p.L407Sfs*17 0.17 TCGA-B7-5816-01 16 70166126 70166126 A G PDPR Missense_Mutation p.K307R 0.16 tolerated(0.23) probably_damaging(0.984) TCGA-B7-5816-01 16 70498985 70498985 G A FUK Intron 0.14 TCGA-B7-5816-01 16 70841426 70841426 T - HYDIN 3'UTR 0.11 TCGA-B7-5816-01 16 71689152 71689152 A G PHLPP2 Missense_Mutation p.V859A 0.12 deleterious(0.04) possibly_damaging(0.78) TCGA-B7-5816-01 16 72991949 72991949 C - ZFHX3 Frame_Shift_Del p.G699Afs*125 0.22 TCGA-B7-5816-01 16 739557 739557 G A WDR24 Silent p.P28P 0.14 TCGA-B7-5816-01 16 75512962 75512962 G A CHST6 Silent p.A255A 0.10 TCGA-B7-5816-01 16 75646156 75646156 C A ADAT1 Missense_Mutation p.R343I 0.16 deleterious(0) probably_damaging(1) TCGA-B7-5816-01 16 766974 766974 G A METRN Missense_Mutation p.A183T 0.11 tolerated(0.08) possibly_damaging(0.545) TCGA-B7-5816-01 16 81078031 81078031 C T ATMIN Missense_Mutation p.S643L 0.12 deleterious(0.02) benign(0.134) TCGA-B7-5816-01 16 84035982 84035982 C T NECAB2 3'UTR 0.07 TCGA-B7-5816-01 16 8862106 8862106 G A ABAT Silent p.R220R 0.11 TCGA-B7-5816-01 16 8866730 8866730 G A ABAT Missense_Mutation p.A304T 0.12 deleterious(0) probably_damaging(0.999) TCGA-B7-5816-01 16 89348778 89348778 T G ANKRD11 Missense_Mutation p.Q1391P 0.10 possibly_damaging(0.899) TCGA-B7-5816-01 16 89620279 89620279 G A SPG7 Missense_Mutation p.G672R 0.13 deleterious(0) probably_damaging(0.997) TCGA-B7-5816-01 16 89849268 89849268 T G FANCA Missense_Mutation p.E542A 0.10 deleterious(0) benign(0.292) TCGA-B7-5816-01 16 89921027 89921027 C T SPIRE2 Missense_Mutation p.R287W 0.13 deleterious(0) probably_damaging(1) TCGA-B7-5816-01 16 90075836 90075836 T C DBNDD1 Missense_Mutation p.I32V 0.09 tolerated_low_confidence(0.2) benign(0.015) TCGA-B7-5816-01 16 9943686 9943686 C T GRIN2A Missense_Mutation p.V419M 0.11 deleterious(0) probably_damaging(0.999) TCGA-B7-5816-01 17 10367791 10367791 G T MYH4 Missense_Mutation p.Q216K 0.18 tolerated(0.82) benign(0.003) TCGA-B7-5816-01 17 10618720 10618720 A - TMEM220 3'UTR 0.10 TCGA-B7-5816-01 17 11593307 11593307 A G DNAH9 Missense_Mutation p.M1390V 0.14 benign(0.042) TCGA-B7-5816-01 17 11837319 11837321 AGA - DNAH9 In_Frame_Del p.E4141del 0.15 TCGA-B7-5816-01 17 1374416 1374417 - G MYO1C Frame_Shift_Ins p.K721Qfs*122 0.14 TCGA-B7-5816-01 17 17766051 17766051 C T TOM1L2 Missense_Mutation p.R399H 0.11 deleterious(0.05) benign(0.014) TCGA-B7-5816-01 17 18630984 18630984 C T TRIM16L Silent p.H38H 0.10 TCGA-B7-5816-01 17 19480786 19480786 C T SLC47A1 Missense_Mutation p.R545W 0.09 deleterious(0.04) probably_damaging(0.985) TCGA-B7-5816-01 17 19568270 19568270 C T ALDH3A2 Missense_Mutation p.R373W 0.07 deleterious(0.02) benign(0.031) TCGA-B7-5816-01 17 20224751 20224751 C T AC004702.2 Intron 0.09 TCGA-B7-5816-01 17 20805602 20805602 C T RP11-344E13.3 RNA 0.13 TCGA-B7-5816-01 17 20921375 20921375 G A USP22 Silent p.I190I 0.10 TCGA-B7-5816-01 17 20921424 20921424 C T USP22 Missense_Mutation p.G174D 0.10 deleterious(0) probably_damaging(0.996) TCGA-B7-5816-01 17 26694878 26694878 G A CTB-96E2.2 Silent p.R52R 0.18 TCGA-B7-5816-01 17 26912386 26912386 A G SPAG5 Missense_Mutation p.V635A 0.05 tolerated(0.94) benign(0.004) TCGA-B7-5816-01 17 27031536 27031536 C T PROCA1 Intron 0.16 TCGA-B7-5816-01 17 27041527 27041527 G T RAB34 3'UTR 0.16 TCGA-B7-5816-01 17 27086766 27086766 G A FAM222B Missense_Mutation p.R71W 0.17 deleterious(0) probably_damaging(0.988) TCGA-B7-5816-01 17 27581284 27581286 GGA - CRYBA1 In_Frame_Del p.G190del 0.20 TCGA-B7-5816-01 17 32964233 32964233 G A TMEM132E Missense_Mutation p.G646D 0.13 deleterious(0.02) probably_damaging(0.941) TCGA-B7-5816-01 17 33266337 33266337 A G CCT6B Missense_Mutation p.F360L 0.11 deleterious(0.02) benign(0.095) TCGA-B7-5816-01 17 33325729 33325729 A G LIG3 Missense_Mutation p.Y699C 0.11 deleterious(0) probably_damaging(0.99) TCGA-B7-5816-01 17 33679963 33679963 C A SLFN11 Missense_Mutation p.Q706H 0.09 deleterious(0) probably_damaging(1) TCGA-B7-5816-01 17 33935348 33935348 T C AP2B1 Missense_Mutation p.V156A 0.08 tolerated(0.14) benign(0.002) TCGA-B7-5816-01 17 35742948 35742948 T - C17orf78 Frame_Shift_Del p.L133Yfs*24 0.16 TCGA-B7-5816-01 17 36065026 36065026 C A HNF1B Missense_Mutation p.V413F 0.11 deleterious(0) probably_damaging(1) TCGA-B7-5816-01 17 3629005 3629005 T - GSG2 Frame_Shift_Del p.F594Lfs*19 0.08 TCGA-B7-5816-01 17 37571384 37571384 A G MED1 Missense_Mutation p.V465A 0.13 tolerated(0.11) benign(0.374) TCGA-B7-5816-01 17 37682159 37682159 C A CDK12 Missense_Mutation p.A1117E 0.08 probably_damaging(0.997) TCGA-B7-5816-01 17 3935533 3935533 C T ZZEF1 Missense_Mutation p.R2260H 0.12 tolerated(0.07) probably_damaging(0.96) TCGA-B7-5816-01 17 39767703 39767703 C T KRT16 Missense_Mutation p.G222D 0.07 deleterious(0.01) probably_damaging(0.996) TCGA-B7-5816-01 17 40665982 40665982 G T ATP6V0A1 Missense_Mutation p.S746I 0.10 deleterious(0) probably_damaging(0.999) TCGA-B7-5816-01 17 40733806 40733806 G A FAM134C 3'UTR 0.15 TCGA-B7-5816-01 17 40948837 40948837 G - WNK4 3'UTR 0.16 TCGA-B7-5816-01 17 41063462 41063462 T C G6PC 3'UTR 0.15 TCGA-B7-5816-01 17 42430091 42430091 T C GRN Silent p.G569G 0.15 TCGA-B7-5816-01 17 42501806 42501806 T C GPATCH8 Missense_Mutation p.N135D 0.04 deleterious(0) probably_damaging(0.992) TCGA-B7-5816-01 17 43317920 43317920 G A FMNL1 Silent p.A386A 0.12 TCGA-B7-5816-01 17 4446275 4446275 C T MYBBP1A Missense_Mutation p.C942Y 0.09 tolerated(0.89) benign(0) TCGA-B7-5816-01 17 45534152 45534152 G T MRPL45P2 RNA 0.10 TCGA-B7-5816-01 17 45623280 45623280 G A NPEPPS Silent p.R87R 0.17 TCGA-B7-5816-01 17 46863659 46863659 T - TTLL6 Frame_Shift_Del p.K543Sfs*5 0.14 TCGA-B7-5816-01 17 4719139 4719139 G - PLD2 Frame_Shift_Del p.G457Dfs*16 0.15 TCGA-B7-5816-01 17 4805392 4805392 C T C17orf107 3'UTR 0.16 TCGA-B7-5816-01 17 48246568 48246568 G A SGCA Missense_Mutation p.D234N 0.15 tolerated(0.12) probably_damaging(0.929) TCGA-B7-5816-01 17 48452823 48452823 G A EME1 Missense_Mutation p.S85N 0.09 deleterious(0.04) probably_damaging(0.981) TCGA-B7-5816-01 17 48470164 48470164 A T LRRC59 Missense_Mutation p.L87H 0.08 deleterious(0) probably_damaging(1) TCGA-B7-5816-01 17 48557342 48557342 C T RSAD1 Missense_Mutation p.A124V 0.16 tolerated(0.29) benign(0.014) TCGA-B7-5816-01 17 48650021 48650021 G A CACNA1G Missense_Mutation p.V285M 0.28 deleterious(0) probably_damaging(0.939) TCGA-B7-5816-01 17 48736701 48736701 T C ABCC3 Missense_Mutation p.W260R 0.10 deleterious(0.03) benign(0.327) TCGA-B7-5816-01 17 4880351 4880351 A G CAMTA2 Splice_Site p.X657_splice 0.09 TCGA-B7-5816-01 17 4936856 4936856 G A SLC52A1 Missense_Mutation p.R310C 0.14 tolerated(0.06) possibly_damaging(0.901) TCGA-B7-5816-01 17 51901904 51901904 C T KIF2B Missense_Mutation p.R504W 0.10 deleterious(0) probably_damaging(1) TCGA-B7-5816-01 17 51902014 51902014 A - KIF2B Frame_Shift_Del p.K542Nfs*2 0.12 TCGA-B7-5816-01 17 55962691 55962691 C T CUEDC1 Missense_Mutation p.A79T 0.11 tolerated(0.08) probably_damaging(0.981) TCGA-B7-5816-01 17 56350262 56350262 G A MPO Missense_Mutation p.L547F 0.25 deleterious(0.04) probably_damaging(0.979) TCGA-B7-5816-01 17 56352929 56352929 G A MPO Missense_Mutation p.R447W 0.14 deleterious(0) probably_damaging(0.995) TCGA-B7-5816-01 17 56393891 56393891 G A BZRAP1 Missense_Mutation p.A628V 0.12 deleterious(0.03) possibly_damaging(0.55) TCGA-B7-5816-01 17 57126583 57126583 C A TRIM37 Nonsense_Mutation p.E496* 0.09 TCGA-B7-5816-01 17 57158518 57158518 A G TRIM37 Silent p.N144N 0.08 TCGA-B7-5816-01 17 57247159 57247159 G A PRR11 Missense_Mutation p.E16K 0.11 tolerated_low_confidence(1) unknown(0) TCGA-B7-5816-01 17 58511501 58511501 G T C17orf64 3'Flank 0.15 TCGA-B7-5816-01 17 58524883 58524883 T C APPBP2 3'UTR 0.10 TCGA-B7-5816-01 17 61622451 61622451 C T KCNH6 Silent p.R839R 0.05 TCGA-B7-5816-01 17 61949631 61949631 C T CSH2 Missense_Mutation p.S170N 0.12 tolerated(0.06) benign(0.009) TCGA-B7-5816-01 17 62018729 62018729 C T SCN4A Missense_Mutation p.S1638N 0.15 tolerated(0.1) benign(0.003) TCGA-B7-5816-01 17 62028926 62028926 G - SCN4A Frame_Shift_Del p.P904Hfs*17 0.13 TCGA-B7-5816-01 17 6547755 6547755 A G MED31 3'UTR 0.09 TCGA-B7-5816-01 17 67031441 67031442 - A ABCA9 Frame_Shift_Ins p.L358Ffs*9 0.26 TCGA-B7-5816-01 17 6704118 6704118 C T TEKT1 Missense_Mutation p.A333T 0.08 deleterious(0.02) possibly_damaging(0.871) TCGA-B7-5816-01 17 7077235 7077235 G A ASGR1 Intron 0.09 TCGA-B7-5816-01 17 7221879 7221879 C - NEURL4 Frame_Shift_Del p.V1267* 0.19 TCGA-B7-5816-01 17 72920768 72920768 C T OTOP2 Missense_Mutation p.P14L 0.27 deleterious(0.04) benign(0.003) TCGA-B7-5816-01 17 72939797 72939797 C T OTOP3 Silent p.G261G 0.06 TCGA-B7-5816-01 17 7345947 7345947 G A FGF11 Missense_Mutation p.C148Y 0.20 deleterious(0) possibly_damaging(0.897) TCGA-B7-5816-01 17 73488803 73488804 AG - KIAA0195 Frame_Shift_Del p.S617Pfs*74 0.10 TCGA-B7-5816-01 17 73490986 73490987 - A KIAA0195 Frame_Shift_Ins p.M869Nfs*18 0.12 TCGA-B7-5816-01 17 73831088 73831088 G T UNC13D Silent p.T635T 0.14 TCGA-B7-5816-01 17 74004369 74004369 C T EVPL Silent p.S1639S 0.10 TCGA-B7-5816-01 17 7462460 7462460 G - TNFSF13 Frame_Shift_Del p.A37Qfs*13 0.19 TCGA-B7-5816-01 17 7480480 7480480 C A EIF4A1 Silent p.T207T 0.18 TCGA-B7-5816-01 17 76817075 76817075 G A USP36 Missense_Mutation p.R276W 0.25 deleterious(0.03) probably_damaging(0.998) TCGA-B7-5816-01 17 76825020 76825020 C T USP36 Missense_Mutation p.G182D 0.06 deleterious(0) probably_damaging(0.999) TCGA-B7-5816-01 17 7755641 7755641 G - KDM6B Frame_Shift_Del p.L1488Sfs*18 0.19 TCGA-B7-5816-01 17 77711848 77711848 C T ENPP7 3'UTR 0.08 TCGA-B7-5816-01 17 78013765 78013765 C T CCDC40 Missense_Mutation p.A83V 0.12 tolerated_low_confidence(0.6) benign(0.002) TCGA-B7-5816-01 17 78219991 78219992 - G SLC26A11 Frame_Shift_Ins p.L382Pfs*50 0.17 TCGA-B7-5816-01 17 78971093 78971093 T C CHMP6 Silent p.T149T 0.16 TCGA-B7-5816-01 17 79632179 79632179 T C OXLD1 3'UTR 0.10 TCGA-B7-5816-01 17 79803557 79803557 C T P4HB Silent p.T413T 0.19 TCGA-B7-5816-01 17 8012618 8012618 G A ALOXE3 Missense_Mutation p.T611M 0.15 deleterious(0) possibly_damaging(0.832) TCGA-B7-5816-01 17 80684911 80684911 G A FN3KRP Missense_Mutation p.G265D 0.07 tolerated(0.37) benign(0.005) TCGA-B7-5816-01 17 8077775 8077775 A G TMEM107 Intron 0.10 TCGA-B7-5816-01 18 11753646 11753646 C T GNAL Silent p.L157L 0.10 TCGA-B7-5816-01 18 13741531 13741531 G A RNMT Missense_Mutation p.R272H 0.07 tolerated(0.29) benign(0.005) TCGA-B7-5816-01 18 13826447 13826447 C T MC5R Missense_Mutation p.A228V 0.12 tolerated(1) benign(0.001) TCGA-B7-5816-01 18 18564452 18564452 C T ROCK1 Silent p.R783R 0.10 TCGA-B7-5816-01 18 21131673 21131673 A G NPC1 Silent p.N524N 0.13 TCGA-B7-5816-01 18 29429625 29429625 G A TRAPPC8 Silent p.H1213H 0.06 TCGA-B7-5816-01 18 32459614 32459614 C T DTNA Missense_Mutation p.A611V 0.06 deleterious_low_confidence(0.04) benign(0.034) TCGA-B7-5816-01 18 3254035 3254035 T C MYL12A Silent p.D110D 0.12 TCGA-B7-5816-01 18 32954226 32954226 G A ZNF396 Missense_Mutation p.L11F 0.19 tolerated(0.08) benign(0.151) TCGA-B7-5816-01 18 33060460 33060460 T C INO80C Missense_Mutation p.E111G 0.11 deleterious(0) possibly_damaging(0.859) TCGA-B7-5816-01 18 33800026 33800026 G A MOCOS Silent p.R602R 0.13 TCGA-B7-5816-01 18 35145328 35145328 T C CELF4 Missense_Mutation p.M93V 0.05 tolerated(0.3) probably_damaging(0.981) TCGA-B7-5816-01 18 44260101 44260101 G A ST8SIA5 Silent p.P345P 0.23 TCGA-B7-5816-01 18 46287807 46287807 A G CTIF Missense_Mutation p.D375G 0.08 deleterious(0.01) probably_damaging(0.942) TCGA-B7-5816-01 18 48473427 48473427 A G ME2 Missense_Mutation p.Y543C 0.13 deleterious(0.01) possibly_damaging(0.545) TCGA-B7-5816-01 18 52896116 52896116 G A TCF4 Missense_Mutation p.A716V 0.14 deleterious(0) probably_damaging(1) TCGA-B7-5816-01 18 59157872 59157872 C T CDH20 Missense_Mutation p.T29M 0.08 tolerated(0.05) benign(0.164) TCGA-B7-5816-01 18 67345077 67345077 C T DOK6 Missense_Mutation p.R133W 0.11 tolerated(0.08) probably_damaging(0.929) TCGA-B7-5816-01 18 6978296 6978296 G A LAMA1 Missense_Mutation p.A2030V 0.20 tolerated(0.34) benign(0.002) TCGA-B7-5816-01 18 74962947 74962947 T C GALR1 Missense_Mutation p.V148A 0.10 deleterious(0.02) benign(0.103) TCGA-B7-5816-01 18 77470348 77470348 T - CTDP1 Frame_Shift_Del p.L260* 0.14 TCGA-B7-5816-01 18 8376108 8376108 T C PTPRM Missense_Mutation p.V1079A 0.14 deleterious(0) probably_damaging(0.988) TCGA-B7-5816-01 18 9517199 9517199 A G RALBP1 Missense_Mutation p.T201A 0.13 deleterious(0.03) benign(0.05) TCGA-B7-5816-01 19 10665838 10665838 T C KRI1 Missense_Mutation p.D575G 0.06 deleterious(0) probably_damaging(0.925) TCGA-B7-5816-01 19 10692430 10692430 A G AP1M2 Missense_Mutation p.L131P 0.13 deleterious(0.01) probably_damaging(1) TCGA-B7-5816-01 19 1079757 1079757 A G HMHA1 Missense_Mutation p.K493R 0.05 tolerated(0.59) benign(0.091) TCGA-B7-5816-01 19 11132513 11132513 C T SMARCA4 Missense_Mutation p.T910M 0.15 probably_damaging(0.99) TCGA-B7-5816-01 19 11943960 11943960 A G ZNF440 3'UTR 0.21 TCGA-B7-5816-01 19 12061267 12061268 CA - ZNF700 3'UTR 0.14 TCGA-B7-5816-01 19 12188130 12188130 A - ZNF844 3'UTR 0.17 TCGA-B7-5816-01 19 12296931 12296931 A - ZNF136 Frame_Shift_Del p.K46Nfs*18 0.13 TCGA-B7-5816-01 19 12461253 12461253 A G ZNF442 Silent p.C382C 0.09 TCGA-B7-5816-01 19 12776537 12776537 A G MAN2B1 Missense_Mutation p.V81A 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-B7-5816-01 19 12792443 12792443 C T DHPS Silent p.L46L 0.18 TCGA-B7-5816-01 19 13246330 13246330 G T NACC1 Silent p.T103T 0.14 TCGA-B7-5816-01 19 1430254 1430254 C - DAZAP1 Frame_Shift_Del p.P257Rfs*78 0.31 TCGA-B7-5816-01 19 15350213 15350213 G A BRD4 Missense_Mutation p.A1189V 0.12 possibly_damaging(0.499) TCGA-B7-5816-01 19 15579458 15579458 T G PGLYRP2 3'UTR 0.09 TCGA-B7-5816-01 19 16790827 16790827 G A TMEM38A Missense_Mutation p.A53T 0.10 deleterious(0) probably_damaging(1) TCGA-B7-5816-01 19 17311596 17311596 C T MYO9B Silent p.N1507N 0.08 TCGA-B7-5816-01 19 18121388 18121388 T C ARRDC2 Silent p.P340P 0.12 TCGA-B7-5816-01 19 18187108 18187108 A G IL12RB1 Silent p.T193T 0.09 TCGA-B7-5816-01 19 18555487 18555487 T - ELL 3'UTR 0.16 TCGA-B7-5816-01 19 19033456 19033456 C T DDX49 Missense_Mutation p.P227S 0.17 deleterious(0.03) possibly_damaging(0.899) TCGA-B7-5816-01 19 19310005 19310005 C T RFXANK Missense_Mutation p.T225I 0.07 deleterious(0) probably_damaging(0.969) TCGA-B7-5816-01 19 20829108 20829108 T C ZNF626 Missense_Mutation p.N36S 0.11 deleterious(0) probably_damaging(0.992) TCGA-B7-5816-01 19 2101986 2101986 A - AP3D1 3'UTR 0.25 TCGA-B7-5816-01 19 2118661 2118661 T G AP3D1 Missense_Mutation p.Q551P 0.14 tolerated(0.05) possibly_damaging(0.815) TCGA-B7-5816-01 19 22271691 22271691 C A ZNF257 Missense_Mutation p.A380D 0.19 deleterious(0.02) benign(0.443) TCGA-B7-5816-01 19 2229826 2229826 C T DOT1L 3'UTR 0.13 TCGA-B7-5816-01 19 23328678 23328678 C A ZNF730 Missense_Mutation p.H278N 0.10 deleterious(0) benign(0.003) TCGA-B7-5816-01 19 23329375 23329375 G A ZNF730 3'UTR 0.11 TCGA-B7-5816-01 19 23557475 23557475 A C ZNF91 Missense_Mutation p.V41G 0.16 deleterious(0) possibly_damaging(0.856) TCGA-B7-5816-01 19 23938230 23938230 A C ZNF681 Missense_Mutation p.L43V 0.22 deleterious(0.02) possibly_damaging(0.874) TCGA-B7-5816-01 19 2989687 2989687 A G TLE6 Missense_Mutation p.Q383R 0.10 deleterious(0.04) benign(0.327) TCGA-B7-5816-01 19 2991983 2991983 G A TLE6 Splice_Site p.X462_splice 0.10 TCGA-B7-5816-01 19 30193594 30193594 C - C19orf12 3'UTR 0.12 TCGA-B7-5816-01 19 31768228 31768228 G A TSHZ3 Missense_Mutation p.T824M 0.28 tolerated(0.18) benign(0.256) TCGA-B7-5816-01 19 35786830 35786830 C A MAG Missense_Mutation p.L121M 0.19 tolerated(0.07) benign(0.23) TCGA-B7-5816-01 19 36362606 36362607 - C APLP1 Frame_Shift_Ins p.P213Sfs*13 0.09 TCGA-B7-5816-01 19 3734315 3734315 C - TJP3 Intron 0.12 TCGA-B7-5816-01 19 38229314 38229314 C A ZNF573 3'UTR 0.23 TCGA-B7-5816-01 19 38572756 38572756 C T SIPA1L3 Missense_Mutation p.A184V 0.12 tolerated(0.82) benign(0.001) TCGA-B7-5816-01 19 39949688 39949688 T C SUPT5H Missense_Mutation p.Y145H 0.08 deleterious(0.01) possibly_damaging(0.558) TCGA-B7-5816-01 19 40029888 40029888 T - EID2 3'UTR 0.42 TCGA-B7-5816-01 19 41063263 41063263 G A SPTBN4 Missense_Mutation p.R1875Q 0.37 deleterious(0) probably_damaging(0.994) TCGA-B7-5816-01 19 41198161 41198161 C T ADCK4 Missense_Mutation p.V472M 0.39 deleterious(0) probably_damaging(0.928) TCGA-B7-5816-01 19 41937954 41937954 A T ATP5SL 3'UTR 0.40 TCGA-B7-5816-01 19 422188 422188 G A SHC2 Silent p.A526A 0.33 TCGA-B7-5816-01 19 42492227 42492227 G A ATP1A3 Missense_Mutation p.P86L 0.09 deleterious(0) probably_damaging(1) TCGA-B7-5816-01 19 43866319 43866319 C T CD177 3'UTR 0.06 TCGA-B7-5816-01 19 43920324 43920324 G A TEX101 Nonsense_Mutation p.W64* 0.07 TCGA-B7-5816-01 19 44377018 44377018 G A ZNF404 Missense_Mutation p.L450F 0.13 tolerated(0.7) probably_damaging(0.962) TCGA-B7-5816-01 19 4447552 4447552 A G UBXN6 Missense_Mutation p.F204L 0.07 deleterious(0) possibly_damaging(0.718) TCGA-B7-5816-01 19 44495769 44495769 C T ZNF155 Nonsense_Mutation p.Q40* 0.07 TCGA-B7-5816-01 19 4528935 4528935 C A PLIN5 Intron 0.15 TCGA-B7-5816-01 19 45525310 45525310 G A RELB Splice_Site p.X169_splice 0.10 TCGA-B7-5816-01 19 45797677 45797677 G A MARK4 Missense_Mutation p.R522H 0.17 tolerated(0.07) benign(0) TCGA-B7-5816-01 19 45901550 45901550 C T PPP1R13L Silent p.A9A 0.07 TCGA-B7-5816-01 19 45997881 45997881 C A RTN2 Silent p.T154T 0.20 TCGA-B7-5816-01 19 46216164 46216164 G A FBXO46 Missense_Mutation p.A197V 0.14 deleterious(0.02) benign(0.054) TCGA-B7-5816-01 19 46375420 46375420 G - FOXA3 Frame_Shift_Del p.L55Sfs*84 0.14 TCGA-B7-5816-01 19 49142853 49142853 A T CA11 Missense_Mutation p.L198H 0.20 deleterious(0) probably_damaging(0.998) TCGA-B7-5816-01 19 49643262 49643262 G A PPFIA3 Missense_Mutation p.S762N 0.26 deleterious(0) probably_damaging(0.993) TCGA-B7-5816-01 19 49863248 49863248 C T TEAD2 Missense_Mutation p.G29S 0.11 tolerated(0.27) probably_damaging(0.972) TCGA-B7-5816-01 19 50475158 50475158 G A VRK3 3'Flank 0.17 TCGA-B7-5816-01 19 50720986 50720986 G A MYH14 Missense_Mutation p.V174M 0.09 deleterious(0) possibly_damaging(0.872) TCGA-B7-5816-01 19 50918172 50918172 A G POLD1 Missense_Mutation p.E830G 0.07 deleterious(0) probably_damaging(0.996) TCGA-B7-5816-01 19 51022368 51022368 G A LRRC4B Missense_Mutation p.A201V 0.32 tolerated(0.11) benign(0.265) TCGA-B7-5816-01 19 51301392 51301392 A G C19orf48 Missense_Mutation p.V105A 0.09 deleterious_low_confidence(0) benign(0.294) TCGA-B7-5816-01 19 51958778 51958778 C A SIGLEC8 Silent p.L315L 0.27 TCGA-B7-5816-01 19 52146564 52146564 G T SIGLEC14 3'UTR 0.16 TCGA-B7-5816-01 19 52519952 52519952 C T ZNF614 Missense_Mutation p.R300H 0.12 tolerated(0.55) probably_damaging(0.959) TCGA-B7-5816-01 19 52919773 52919773 A C ZNF528 Missense_Mutation p.K556N 0.20 deleterious(0.03) probably_damaging(0.977) TCGA-B7-5816-01 19 53958012 53958013 - T ZNF761 RNA 0.09 TCGA-B7-5816-01 19 53959611 53959611 G A ZNF761 RNA 0.12 TCGA-B7-5816-01 19 55106591 55106591 G C LILRA1 Missense_Mutation p.A129P 0.13 deleterious(0) probably_damaging(0.998) TCGA-B7-5816-01 19 55420813 55420813 C T NCR1 Nonsense_Mutation p.R189* 0.20 TCGA-B7-5816-01 19 55530062 55530062 C T GP6 Missense_Mutation p.A228T 0.20 tolerated_low_confidence(0.4) benign(0.014) TCGA-B7-5816-01 19 55966630 55966630 C T ISOC2 Missense_Mutation p.R155H 0.18 deleterious(0.02) benign(0.235) TCGA-B7-5816-01 19 56114077 56114077 G A ZNF524 Missense_Mutation p.C200Y 0.29 deleterious(0) probably_damaging(1) TCGA-B7-5816-01 19 56133447 56133447 G A ZNF784 Silent p.H214H 0.45 TCGA-B7-5816-01 19 56600295 56600295 C T ZNF787 Silent p.T82T 0.31 TCGA-B7-5816-01 19 56733195 56733195 A G ZSCAN5A Missense_Mutation p.C414R 0.10 deleterious(0) probably_damaging(1) TCGA-B7-5816-01 19 57133703 57133703 G A ZNF71 Missense_Mutation p.G350S 0.10 deleterious(0) probably_damaging(0.999) TCGA-B7-5816-01 19 57646264 57646264 T - ZIM3 3'UTR 0.20 TCGA-B7-5816-01 19 57669726 57669726 T G DUXA Missense_Mutation p.K136N 0.11 deleterious(0.01) benign(0.192) TCGA-B7-5816-01 19 5784292 5784292 C A CTB-54O9.9 3'UTR 0.11 TCGA-B7-5816-01 19 579603 579603 G - BSG Frame_Shift_Del p.G175Afs*4 0.10 TCGA-B7-5816-01 19 58500078 58500078 G T ZNF606 Silent p.T63T 0.08 TCGA-B7-5816-01 19 58600183 58600183 G A ZSCAN18 Missense_Mutation p.A198V 0.29 tolerated(0.27) benign(0.365) TCGA-B7-5816-01 19 608088 608088 T C HCN2 Missense_Mutation p.M448T 0.13 deleterious(0) possibly_damaging(0.758) TCGA-B7-5816-01 19 6364536 6364536 C T CLPP Silent p.C147C 0.15 TCGA-B7-5816-01 19 6697473 6697473 G A C3 Missense_Mutation p.S893L 0.16 deleterious(0) possibly_damaging(0.584) TCGA-B7-5816-01 19 6755214 6755214 C T SH2D3A Silent p.G203G 0.11 TCGA-B7-5816-01 19 6833612 6833612 C T VAV1 Missense_Mutation p.P562S 0.11 tolerated(0.19) benign(0.007) TCGA-B7-5816-01 19 6926447 6926447 A G EMR1 Missense_Mutation p.E686G 0.11 deleterious(0) probably_damaging(1) TCGA-B7-5816-01 19 6926611 6926611 C T EMR1 Missense_Mutation p.R741C 0.23 deleterious(0) probably_damaging(0.982) TCGA-B7-5816-01 19 7119461 7119462 CT - INSR Frame_Shift_Del p.R1264Sfs*3 0.08 TCGA-B7-5816-01 19 7167978 7167978 C T INSR Splice_Site p.X537_splice 0.11 TCGA-B7-5816-01 19 7685199 7685199 G A XAB2 Missense_Mutation p.S743L 0.11 deleterious(0.04) benign(0.107) TCGA-B7-5816-01 19 7830088 7830088 G A CLEC4M Missense_Mutation p.A50T 0.08 tolerated(0.11) benign(0.036) TCGA-B7-5816-01 19 7964763 7964763 C - LRRC8E Frame_Shift_Del p.P454Rfs*33 0.09 TCGA-B7-5816-01 19 8190894 8190894 G A FBN3 Silent p.N871N 0.13 TCGA-B7-5816-01 19 8389521 8389521 A G KANK3 Missense_Mutation p.L759P 0.11 deleterious(0) possibly_damaging(0.883) TCGA-B7-5816-01 19 8555592 8555592 C T PRAM1 Missense_Mutation p.A598T 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-B7-5816-01 19 8654188 8654188 C T ADAMTS10 Missense_Mutation p.G699D 0.06 deleterious(0.03) probably_damaging(1) TCGA-B7-5816-01 19 9056251 9056251 T C MUC16 Missense_Mutation p.T10399A 0.13 benign(0.388) TCGA-B7-5816-01 19 9490791 9490791 A - ZNF177 Frame_Shift_Del p.T106Hfs*5 0.13 TCGA-B7-5816-01 1 100350169 100350169 G A AGL Missense_Mutation p.R864Q 0.10 tolerated(0.24) benign(0.115) TCGA-B7-5816-01 1 108697684 108697684 C T SLC25A24 Missense_Mutation p.R248H 0.13 tolerated(0.31) benign(0.022) TCGA-B7-5816-01 1 109740119 109740119 C T KIAA1324 Silent p.T715T 0.07 TCGA-B7-5816-01 1 110086217 110086217 C - GPR61 Frame_Shift_Del p.P193Qfs*120 0.12 TCGA-B7-5816-01 1 110561069 110561069 T C AHCYL1 Missense_Mutation p.S400P 0.08 tolerated(0.29) benign(0.085) TCGA-B7-5816-01 1 110889132 110889132 A - RBM15 3'UTR 0.17 TCGA-B7-5816-01 1 110924274 110924274 C T SLC16A4 Missense_Mutation p.G122S 0.07 deleterious(0) probably_damaging(1) TCGA-B7-5816-01 1 111216142 111216142 G A KCNA3 Silent p.S430S 0.11 TCGA-B7-5816-01 1 112042838 112042838 A C ADORA3 Intron 0.07 TCGA-B7-5816-01 1 11345830 11345830 C A UBIAD1 Missense_Mutation p.P220H 0.12 deleterious(0) probably_damaging(1) TCGA-B7-5816-01 1 114320337 114320337 A G RSBN1 Missense_Mutation p.F491L 0.12 deleterious(0.01) benign(0.066) TCGA-B7-5816-01 1 117492122 117492122 G A PTGFRN Missense_Mutation p.G381R 0.11 tolerated(0.48) benign(0.196) TCGA-B7-5816-01 1 117626723 117626723 C T TTF2 Missense_Mutation p.R663W 0.07 deleterious(0) probably_damaging(0.973) TCGA-B7-5816-01 1 11850909 11850909 T G MTHFR Missense_Mutation p.E600A 0.10 tolerated(0.22) benign(0.003) TCGA-B7-5816-01 1 118526506 118526507 - T SPAG17 Frame_Shift_Ins p.L1934Tfs*9 0.14 TCGA-B7-5816-01 1 1192407 1192407 G T UBE2J2 Missense_Mutation p.P143T 0.18 deleterious(0.03) benign(0.271) TCGA-B7-5816-01 1 12337952 12337952 G A VPS13D Missense_Mutation p.C1436Y 0.07 possibly_damaging(0.461) TCGA-B7-5816-01 1 1266841 1266841 G A TAS1R3 Missense_Mutation p.G39E 0.24 deleterious(0) probably_damaging(1) TCGA-B7-5816-01 1 12820983 12820983 G A C1orf158 3'UTR 0.35 TCGA-B7-5816-01 1 1403815 1403815 G A ATAD3C Missense_Mutation p.A381T 0.13 tolerated(0.57) benign(0.004) TCGA-B7-5816-01 1 145558843 145558843 T C ANKRD35 Silent p.R154R 0.10 TCGA-B7-5816-01 1 146747814 146747814 A T CHD1L Missense_Mutation p.I478L 0.15 deleterious(0.05) benign(0.011) TCGA-B7-5816-01 1 149899128 149899128 T A SF3B4 Missense_Mutation p.E31D 0.09 deleterious(0.01) probably_damaging(0.986) TCGA-B7-5816-01 1 150530959 150530959 G A ADAMTSL4 Missense_Mutation p.R798Q 0.14 tolerated(0.4) possibly_damaging(0.875) TCGA-B7-5816-01 1 150530983 150530983 G A ADAMTSL4 Missense_Mutation p.R806Q 0.18 deleterious(0) probably_damaging(0.998) TCGA-B7-5816-01 1 150532582 150532582 G T ADAMTSL4 Missense_Mutation p.Q1045H 0.13 deleterious(0) probably_damaging(1) TCGA-B7-5816-01 1 152733224 152733224 G A KPRP Missense_Mutation p.R387H 0.28 tolerated_low_confidence(0.05) benign(0.209) TCGA-B7-5816-01 1 152944454 152944454 C - SPRR4 Frame_Shift_Del p.P31Lfs*79 0.11 TCGA-B7-5816-01 1 153701031 153701031 C A INTS3 5'UTR 0.07 TCGA-B7-5816-01 1 153745538 153745538 C T INTS3 Missense_Mutation p.S1011L 0.08 deleterious(0.02) probably_damaging(0.947) TCGA-B7-5816-01 1 154987740 154987740 C T ZBTB7B Missense_Mutation p.R236C 0.08 deleterious(0.02) probably_damaging(0.942) TCGA-B7-5816-01 1 155015940 155015940 T C DCST1 Missense_Mutation p.L376P 0.08 deleterious(0) probably_damaging(0.984) TCGA-B7-5816-01 1 155253807 155253807 A G HCN3 Missense_Mutation p.I251V 0.11 deleterious(0.03) benign(0.224) TCGA-B7-5816-01 1 155263029 155263029 C T PKLR Missense_Mutation p.A459T 0.07 deleterious(0.04) benign(0.047) TCGA-B7-5816-01 1 155300198 155300198 G A RUSC1 Missense_Mutation p.V849M 0.12 deleterious(0) probably_damaging(0.999) TCGA-B7-5816-01 1 155736390 155736390 T - GON4L Frame_Shift_Del p.D959Tfs*19 0.11 TCGA-B7-5816-01 1 155823178 155823178 T C GON4L Missense_Mutation p.K132E 0.25 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-B7-5816-01 1 155931509 155931509 G A ARHGEF2 Missense_Mutation p.R471C 0.25 deleterious(0) probably_damaging(0.998) TCGA-B7-5816-01 1 156507037 156507037 G A IQGAP3 Missense_Mutation p.R1120C 0.11 deleterious(0.03) benign(0.033) TCGA-B7-5816-01 1 156521764 156521764 A G IQGAP3 Splice_Site p.X524_splice 0.16 TCGA-B7-5816-01 1 156562162 156562163 - C APOA1BP Frame_Shift_Ins p.T102Hfs*19 0.15 TCGA-B7-5816-01 1 156902403 156902403 C T LRRC71 Intron 0.11 TCGA-B7-5816-01 1 157665902 157665902 C A FCRL3 Missense_Mutation p.G354W 0.10 deleterious(0) probably_damaging(1) TCGA-B7-5816-01 1 158984717 158984717 A - IFI16 Frame_Shift_Del p.E85Kfs*3 0.10 TCGA-B7-5816-01 1 160011355 160011355 T C KCNJ10 Missense_Mutation p.Y323C 0.16 deleterious(0) probably_damaging(0.997) TCGA-B7-5816-01 1 160395182 160395182 G - VANGL2 3'UTR 0.14 TCGA-B7-5816-01 1 161130687 161130687 A G USP21 Missense_Mutation p.H86R 0.19 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-B7-5816-01 1 161476270 161476270 C T FCGR2A Missense_Mutation p.H85Y 0.11 deleterious(0) benign(0.003) TCGA-B7-5816-01 1 161953757 161953757 G A OLFML2B Missense_Mutation p.A654V 0.13 tolerated(0.73) benign(0.004) TCGA-B7-5816-01 1 165175203 165175203 G A LMX1A Missense_Mutation p.P296S 0.07 tolerated(0.09) benign(0.009) TCGA-B7-5816-01 1 165638217 165638218 - AT ALDH9A1 Frame_Shift_Ins p.V385Mfs*8 0.12 TCGA-B7-5816-01 1 168211851 168211851 C A SFT2D2 3'UTR 0.14 TCGA-B7-5816-01 1 169435016 169435016 A T SLC19A2 3'UTR 0.11 TCGA-B7-5816-01 1 173526643 173526643 G T SLC9C2 Missense_Mutation p.L351I 0.10 tolerated(0.07) benign(0.21) TCGA-B7-5816-01 1 173952672 173952672 C T RC3H1 Missense_Mutation p.R159Q 0.14 deleterious(0.02) probably_damaging(0.997) TCGA-B7-5816-01 1 174219653 174219653 G A RABGAP1L Missense_Mutation p.R253H 0.12 deleterious(0) possibly_damaging(0.567) TCGA-B7-5816-01 1 179886654 179886654 A G TOR1AIP1 Missense_Mutation p.I344M 0.12 deleterious(0) benign(0.032) TCGA-B7-5816-01 1 180080322 180080322 A T CEP350 3'UTR 0.13 TCGA-B7-5816-01 1 181680204 181680204 A C CACNA1E Silent p.A390A 0.14 TCGA-B7-5816-01 1 182026233 182026233 G A ZNF648 Missense_Mutation p.R305W 0.20 deleterious(0.03) probably_damaging(0.999) TCGA-B7-5816-01 1 182908681 182908681 A - SHCBP1L Frame_Shift_Del p.Y260Mfs*84 0.11 TCGA-B7-5816-01 1 183072489 183072489 C T LAMC1 Missense_Mutation p.R149C 0.13 deleterious(0) probably_damaging(1) TCGA-B7-5816-01 1 185106736 185106736 A G TRMT1L Splice_Site p.X505_splice 0.10 TCGA-B7-5816-01 1 186083127 186083127 G - HMCN1 Frame_Shift_Del p.G3718Afs*6 0.10 TCGA-B7-5816-01 1 193149377 193149377 T - B3GALT2 3'UTR 0.09 TCGA-B7-5816-01 1 19408128 19408128 G T UBR4 Intron 0.10 TCGA-B7-5816-01 1 196709865 196709865 G A CFH Missense_Mutation p.G967R 0.12 deleterious(0) probably_damaging(0.999) TCGA-B7-5816-01 1 196973799 196973799 G T CFHR5 Missense_Mutation p.A447S 0.21 tolerated(0.34) benign(0.108) TCGA-B7-5816-01 1 197874962 197874962 T C C1orf53 Missense_Mutation p.Y101H 0.10 deleterious(0.01) probably_damaging(0.992) TCGA-B7-5816-01 1 200561223 200561223 A G KIF14 Missense_Mutation p.M933T 0.12 tolerated(0.64) benign(0.001) TCGA-B7-5816-01 1 201981267 201981268 - CT ELF3 Frame_Shift_Ins p.G118Wfs*38 0.22 TCGA-B7-5816-01 1 202976930 202976930 T C TMEM183A Silent p.D46D 0.07 TCGA-B7-5816-01 1 202984028 202984028 G A TMEM183A Missense_Mutation p.G127R 0.07 tolerated(0.5) benign(0.004) TCGA-B7-5816-01 1 205814522 205814522 T C PM20D1 Silent p.P140P 0.08 TCGA-B7-5816-01 1 206757987 206757987 T - RASSF5 Frame_Shift_Del p.F321Lfs*39 0.10 TCGA-B7-5816-01 1 206821237 206821237 C T DYRK3 Nonsense_Mutation p.R232* 0.05 TCGA-B7-5816-01 1 207647197 207647197 G A CR2 Missense_Mutation p.R736H 0.16 tolerated(1) benign(0.003) TCGA-B7-5816-01 1 207867814 207867814 A - CR1L Frame_Shift_Del p.K195Rfs*56 0.09 TCGA-B7-5816-01 1 207870962 207870962 G A CR1L Missense_Mutation p.G326E 0.23 deleterious(0) probably_damaging(0.999) TCGA-B7-5816-01 1 208390570 208390570 A G PLXNA2 Missense_Mutation p.L233P 0.08 deleterious(0) probably_damaging(0.996) TCGA-B7-5816-01 1 209797250 209797250 C T LAMB3 Missense_Mutation p.G691D 0.10 tolerated(0.33) benign(0.001) TCGA-B7-5816-01 1 210577992 210577992 C A HHAT Missense_Mutation p.P219H 0.13 deleterious(0) probably_damaging(0.997) TCGA-B7-5816-01 1 211192300 211192300 A C KCNH1 Missense_Mutation p.L286R 0.16 tolerated(0.25) possibly_damaging(0.642) TCGA-B7-5816-01 1 21133762 21133762 A - EIF4G3 3'UTR 0.10 TCGA-B7-5816-01 1 212515580 212515580 T C PPP2R5A Silent p.P177P 0.07 TCGA-B7-5816-01 1 214830653 214830653 A - CENPF Frame_Shift_Del p.S2957Afs*6 0.15 TCGA-B7-5816-01 1 22054927 22054927 C T USP48 Intron 0.15 TCGA-B7-5816-01 1 226555951 226555951 G A PARP1 Silent p.H742H 0.15 TCGA-B7-5816-01 1 228400306 228400306 C T OBSCN Silent p.D274D 0.18 TCGA-B7-5816-01 1 229460857 229460857 A - CCSAP 3'UTR 0.17 TCGA-B7-5816-01 1 229730525 229730525 T C TAF5L Missense_Mutation p.D430G 0.13 deleterious(0.02) probably_damaging(0.94) TCGA-B7-5816-01 1 230492787 230492787 G A PGBD5 Silent p.S135S 0.10 TCGA-B7-5816-01 1 230916357 230916357 C - CAPN9 Frame_Shift_Del p.P463Lfs*6 0.11 TCGA-B7-5816-01 1 231700291 231700291 G T TSNAX Missense_Mutation p.Q171H 0.13 tolerated(0.16) benign(0) TCGA-B7-5816-01 1 236703909 236703909 G A LGALS8 Missense_Mutation p.G131S 0.07 tolerated(1) benign(0.002) TCGA-B7-5816-01 1 237870288 237870288 A G RYR2 Missense_Mutation p.N3207S 0.10 benign(0.017) TCGA-B7-5816-01 1 24140703 24140703 C T HMGCL Silent p.Q158Q 0.17 TCGA-B7-5816-01 1 242048759 242048759 G - EXO1 Frame_Shift_Del p.L787Yfs*37 0.10 TCGA-B7-5816-01 1 245809424 245809424 G A KIF26B Missense_Mutation p.M700I 0.08 deleterious(0.02) unknown(0) TCGA-B7-5816-01 1 245865910 245865910 T A KIF26B 3'UTR 0.09 TCGA-B7-5816-01 1 247319982 247319982 T C ZNF124 Silent p.G252G 0.11 TCGA-B7-5816-01 1 247769393 247769393 G A OR2G3 Missense_Mutation p.C169Y 0.11 deleterious(0) probably_damaging(0.998) TCGA-B7-5816-01 1 248028080 248028080 A G TRIM58 Missense_Mutation p.E197G 0.13 deleterious(0) probably_damaging(0.988) TCGA-B7-5816-01 1 25167527 25167527 C T CLIC4 3'UTR 0.23 TCGA-B7-5816-01 1 25893405 25893405 C T LDLRAP1 Silent p.Y283Y 0.21 TCGA-B7-5816-01 1 27087486 27087486 C A ARID1A Missense_Mutation p.P687H 0.08 unknown(0) TCGA-B7-5816-01 1 27691347 27691347 G T MAP3K6 Missense_Mutation p.L133I 0.18 deleterious(0) probably_damaging(0.997) TCGA-B7-5816-01 1 32566155 32566155 C T TMEM39B Missense_Mutation p.R410C 0.08 deleterious(0) probably_damaging(0.999) TCGA-B7-5816-01 1 3322195 3322195 C T PRDM16 Missense_Mutation p.T390M 0.05 deleterious(0) probably_damaging(0.932) TCGA-B7-5816-01 1 35847348 35847348 G A ZMYM4 Missense_Mutation p.A520T 0.08 tolerated(0.67) benign(0.019) TCGA-B7-5816-01 1 36060309 36060309 C A TFAP2E 3'UTR 0.11 TCGA-B7-5816-01 1 36509104 36509104 C T AGO3 Silent p.H743H 0.09 TCGA-B7-5816-01 1 38006062 38006062 G A SNIP1 Missense_Mutation p.R208W 0.08 deleterious(0.02) benign(0.01) TCGA-B7-5816-01 1 38227196 38227196 G A EPHA10 Missense_Mutation p.S244L 0.21 deleterious(0) probably_damaging(0.996) TCGA-B7-5816-01 1 38304332 38304332 C T MTF1 Silent p.K248K 0.13 TCGA-B7-5816-01 1 39800302 39800302 T C MACF1 Intron 0.16 TCGA-B7-5816-01 1 39908391 39908391 A - MACF1 Frame_Shift_Del p.N4313Mfs*32 0.11 TCGA-B7-5816-01 1 42041284 42041284 C A HIVEP3 Missense_Mutation p.G1713V 0.12 possibly_damaging(0.89) TCGA-B7-5816-01 1 44156565 44156565 C - KDM4A Frame_Shift_Del p.Q698Rfs*8 0.15 TCGA-B7-5816-01 1 44878229 44878229 C T RNF220 Missense_Mutation p.R154C 0.20 deleterious(0) probably_damaging(0.99) TCGA-B7-5816-01 1 45797950 45797950 C T MUTYH Missense_Mutation p.R271Q 0.10 deleterious(0.03) possibly_damaging(0.583) TCGA-B7-5816-01 1 46650505 46650505 T C TSPAN1 Missense_Mutation p.Y130H 0.07 deleterious(0) probably_damaging(0.999) TCGA-B7-5816-01 1 47154079 47154079 G A EFCAB14 Silent p.S311S 0.11 TCGA-B7-5816-01 1 52344138 52344138 C T NRD1 Missense_Mutation p.M50I 0.15 deleterious_low_confidence(0.01) benign(0) TCGA-B7-5816-01 1 55319114 55319114 C T DHCR24 Missense_Mutation p.V464M 0.11 tolerated(0.22) benign(0.1) TCGA-B7-5816-01 1 55559661 55559661 T - USP24 Frame_Shift_Del p.G2102Afs*19 0.13 TCGA-B7-5816-01 1 55591012 55591012 G A USP24 Missense_Mutation p.A1314V 0.08 tolerated(0.06) benign(0.002) TCGA-B7-5816-01 1 6313841 6313841 C T GPR153 Silent p.Q241Q 0.15 TCGA-B7-5816-01 1 6592755 6592755 G A NOL9 Missense_Mutation p.R435C 0.09 deleterious(0.03) possibly_damaging(0.806) TCGA-B7-5816-01 1 70819761 70819761 G A ANKRD13C Missense_Mutation p.P111S 0.11 tolerated_low_confidence(0.21) benign(0.002) TCGA-B7-5816-01 1 74834788 74834788 T C FPGT-TNNI3K Silent p.I582I 0.16 TCGA-B7-5816-01 1 76272810 76272810 A G MSH4 Missense_Mutation p.N191S 0.08 tolerated(0.75) benign(0.01) TCGA-B7-5816-01 1 79120723 79120723 C A IFI44 Silent p.A173A 0.10 TCGA-B7-5816-01 1 79412005 79412005 G A ELTD1 Silent p.S93S 0.11 TCGA-B7-5816-01 1 8418690 8418690 C T RERE Missense_Mutation p.R1302Q 0.20 unknown(0) TCGA-B7-5816-01 1 85634870 85634872 GAG - SYDE2 In_Frame_Del p.P903del 0.10 TCGA-B7-5816-01 1 89579814 89579814 G A GBP2 Missense_Mutation p.T345M 0.12 deleterious(0.01) probably_damaging(0.928) TCGA-B7-5816-01 1 90048552 90048552 C A LRRC8B Missense_Mutation p.H115N 0.09 tolerated(0.06) probably_damaging(0.988) TCGA-B7-5816-01 1 900527 900527 C T KLHL17 Missense_Mutation p.P629S 0.16 deleterious(0.01) unknown(0) TCGA-B7-5816-01 1 9324944 9324944 T G H6PD 3'UTR 0.07 TCGA-B7-5816-01 1 93257933 93257933 T C EVI5 Missense_Mutation p.T7A 0.11 tolerated_low_confidence(1) benign(0.007) TCGA-B7-5816-01 1 94512630 94512630 C T ABCA4 Silent p.E921E 0.16 TCGA-B7-5816-01 20 10019036 10019036 G T ANKEF1 Missense_Mutation p.E29D 0.09 deleterious(0.01) probably_damaging(0.987) TCGA-B7-5816-01 20 13846098 13846098 G T SEL1L2 Intron 0.13 TCGA-B7-5816-01 20 15210620 15210620 C T MACROD2 Silent p.G151G 0.11 TCGA-B7-5816-01 20 1902288 1902288 C T SIRPA Silent p.C228C 0.21 TCGA-B7-5816-01 20 20017972 20017972 C T CRNKL1 Missense_Mutation p.D792N 0.06 tolerated(0.11) benign(0.068) TCGA-B7-5816-01 20 23473695 23473695 C A CST8 Missense_Mutation p.S111Y 0.10 tolerated(0.41) benign(0.009) TCGA-B7-5816-01 20 23548877 23548877 C A CST9L Missense_Mutation p.G71W 0.14 deleterious(0.02) benign(0.252) TCGA-B7-5816-01 20 25261593 25261593 C T PYGB Silent p.A416A 0.08 TCGA-B7-5816-01 20 25274898 25274898 A G PYGB Missense_Mutation p.D761G 0.11 tolerated(0.14) benign(0.022) TCGA-B7-5816-01 20 31021277 31021277 A - ASXL1 Frame_Shift_Del p.K427Nfs*35 0.11 TCGA-B7-5816-01 20 3210170 3210170 C A SLC4A11 Missense_Mutation p.S624I 0.08 deleterious(0) probably_damaging(0.991) TCGA-B7-5816-01 20 32354675 32354675 C T ZNF341 Missense_Mutation p.P407L 0.10 tolerated(0.32) benign(0.002) TCGA-B7-5816-01 20 34022311 34022311 C T GDF5 Missense_Mutation p.R301Q 0.21 tolerated(0.12) probably_damaging(0.971) TCGA-B7-5816-01 20 35269703 35269703 T C SLA2 Silent p.P12P 0.12 TCGA-B7-5816-01 20 36789944 36789944 G A TGM2 Missense_Mutation p.T23M 0.06 deleterious(0) probably_damaging(1) TCGA-B7-5816-01 20 39794919 39794919 T G PLCG1 Missense_Mutation p.F629V 0.10 deleterious(0) probably_damaging(0.976) TCGA-B7-5816-01 20 42089677 42089677 A G SRSF6 Missense_Mutation p.R337G 0.11 deleterious_low_confidence(0) unknown(0) TCGA-B7-5816-01 20 43836429 43836429 A - SEMG1 Frame_Shift_Del p.R165Gfs*7 0.08 TCGA-B7-5816-01 20 44444242 44444242 G A UBE2C Silent p.A93A 0.23 TCGA-B7-5816-01 20 44505382 44505382 G A ZSWIM3 Missense_Mutation p.R62Q 0.12 deleterious(0.04) possibly_damaging(0.768) TCGA-B7-5816-01 20 45874790 45874790 T - ZMYND8 Frame_Shift_Del p.N749Ifs*15 0.11 TCGA-B7-5816-01 20 47872372 47872372 T C ZNFX1 Missense_Mutation p.D926G 0.06 tolerated(0.11) possibly_damaging(0.559) TCGA-B7-5816-01 20 48098562 48098562 G A KCNB1 Silent p.A152A 0.29 TCGA-B7-5816-01 20 49225219 49225219 A G FAM65C Silent p.D243D 0.12 TCGA-B7-5816-01 20 50071134 50071134 C - NFATC2 Frame_Shift_Del p.Q601Rfs*54 0.15 TCGA-B7-5816-01 20 54961381 54961381 A T AURKA Missense_Mutation p.V84E 0.11 tolerated(1) benign(0.062) TCGA-B7-5816-01 20 54978709 54978709 A G CSTF1 Missense_Mutation p.T408A 0.09 deleterious(0.04) benign(0.207) TCGA-B7-5816-01 20 57290352 57290352 G A NPEPL1 Silent p.G514G 0.24 TCGA-B7-5816-01 20 57599037 57599037 G A TUBB1 Silent p.A185A 0.08 TCGA-B7-5816-01 20 5904061 5904061 G T CHGB Missense_Mutation p.G424V 0.16 deleterious(0.02) probably_damaging(0.984) TCGA-B7-5816-01 20 5922653 5922653 C T TRMT6 Silent p.E352E 0.12 TCGA-B7-5816-01 20 60887002 60887002 G A LAMA5 Silent p.Y3203Y 0.11 TCGA-B7-5816-01 20 60969279 60969279 G T CABLES2 Silent p.G216G 0.05 TCGA-B7-5816-01 20 61512124 61512124 T C DIDO1 Silent p.R1728R 0.13 TCGA-B7-5816-01 20 61513523 61513523 G A DIDO1 Missense_Mutation p.P1262L 0.04 probably_damaging(0.998) TCGA-B7-5816-01 20 61538508 61538508 G A DIDO1 Silent p.C455C 0.08 TCGA-B7-5816-01 20 62421220 62421220 C T ZBTB46 Silent p.P297P 0.09 TCGA-B7-5816-01 20 8745986 8745986 A - PLCB1 Frame_Shift_Del p.K972Rfs*30 0.12 TCGA-B7-5816-01 20 9368181 9368181 T C PLCB4 Missense_Mutation p.M379T 0.11 deleterious(0) possibly_damaging(0.675) TCGA-B7-5816-01 21 16339996 16339996 T G NRIP1 Missense_Mutation p.K173T 0.07 tolerated(0.15) probably_damaging(0.997) TCGA-B7-5816-01 21 17202863 17202863 C T USP25 Silent p.S569S 0.06 TCGA-B7-5816-01 21 19647634 19647634 C T TMPRSS15 Silent p.L928L 0.08 TCGA-B7-5816-01 21 30250584 30250584 A - N6AMT1 Frame_Shift_Del p.L158Wfs*14 0.12 TCGA-B7-5816-01 21 31797925 31797925 A - KRTAP13-3 Frame_Shift_Del p.F102Lfs*9 0.26 TCGA-B7-5816-01 21 31913910 31913910 A C KRTAP19-6 3'UTR 0.22 TCGA-B7-5816-01 21 31933569 31933569 C T KRTAP19-7 Missense_Mutation p.G14S 0.08 tolerated_low_confidence(0.39) unknown(0) TCGA-B7-5816-01 21 32638798 32638798 C A TIAM1 Missense_Mutation p.S164I 0.14 deleterious_low_confidence(0.03) benign(0.406) TCGA-B7-5816-01 21 33044574 33044574 C T SCAF4 Missense_Mutation p.R861H 0.10 unknown(0) TCGA-B7-5816-01 21 33073336 33073336 G - SCAF4 Frame_Shift_Del p.P250Hfs*96 0.16 TCGA-B7-5816-01 21 33684272 33684272 C - MRAP Frame_Shift_Del p.P163Lfs*18 0.12 TCGA-B7-5816-01 21 33887521 33887521 C T EVA1C 3'UTR 0.11 TCGA-B7-5816-01 21 34860662 34860662 T - DNAJC28 Frame_Shift_Del p.T347Qfs*28 0.09 TCGA-B7-5816-01 21 34860883 34860883 G A DNAJC28 Missense_Mutation p.A273V 0.10 tolerated(0.29) benign(0.014) TCGA-B7-5816-01 21 34927489 34927489 G C SON Silent p.R1984R 0.10 TCGA-B7-5816-01 21 35275755 35275755 T C AP000304.12 Intron 0.14 TCGA-B7-5816-01 21 38853058 38853059 - A DYRK1A Frame_Shift_Ins p.N151Kfs*12 0.12 TCGA-B7-5816-01 21 38853114 38853114 G T DYRK1A Missense_Mutation p.G168C 0.15 deleterious(0) probably_damaging(1) TCGA-B7-5816-01 21 39086527 39086527 C T KCNJ6 Missense_Mutation p.M311I 0.13 tolerated(0.52) possibly_damaging(0.789) TCGA-B7-5816-01 21 40568902 40568902 C T BRWD1 Silent p.R2031R 0.04 TCGA-B7-5816-01 21 40668215 40668215 T A BRWD1 Missense_Mutation p.N142Y 0.04 tolerated(0.07) probably_damaging(0.991) TCGA-B7-5816-01 21 43413728 43413728 T G ZBTB21 Missense_Mutation p.Q159H 0.12 tolerated(0.1) possibly_damaging(0.664) TCGA-B7-5816-01 21 44283598 44283598 G A WDR4 Silent p.H135H 0.12 TCGA-B7-5816-01 21 45825124 45825124 G A TRPM2 Missense_Mutation p.V880M 0.18 deleterious(0.05) benign(0.017) TCGA-B7-5816-01 21 46193537 46193537 C T UBE2G2 Missense_Mutation p.E104K 0.10 deleterious(0) probably_damaging(0.999) TCGA-B7-5816-01 21 46689830 46689830 G A POFUT2 Silent p.A312A 0.06 TCGA-B7-5816-01 21 47423458 47423458 T C COL6A1 Missense_Mutation p.V873A 0.16 deleterious(0) benign(0.137) TCGA-B7-5816-01 21 47552253 47552253 C T COL6A2 Silent p.D949D 0.14 TCGA-B7-5816-01 21 47616150 47616150 G A LSS Missense_Mutation p.R568W 0.14 deleterious(0) possibly_damaging(0.843) TCGA-B7-5816-01 22 18022618 18022618 C - CECR2 Frame_Shift_Del p.K910Sfs*89 0.13 TCGA-B7-5816-01 22 20780146 20780146 G A SCARF2 Missense_Mutation p.A711V 0.24 tolerated(0.13) benign(0.013) TCGA-B7-5816-01 22 21333913 21333913 C - AIFM3 Intron 0.18 TCGA-B7-5816-01 22 24123446 24123446 T - MMP11 Frame_Shift_Del p.F310Sfs*74 0.17 TCGA-B7-5816-01 22 24224736 24224736 G T SLC2A11 Missense_Mutation p.R266L 0.20 tolerated(0.08) benign(0.017) TCGA-B7-5816-01 22 24462992 24462992 C G CABIN1 Missense_Mutation p.R698G 0.18 deleterious(0) probably_damaging(0.994) TCGA-B7-5816-01 22 25023429 25023429 G A GGT1 Missense_Mutation p.A351T 0.13 deleterious(0.01) probably_damaging(0.931) TCGA-B7-5816-01 22 26702070 26702070 C T SEZ6L Missense_Mutation p.H492Y 0.14 deleterious(0.01) probably_damaging(1) TCGA-B7-5816-01 22 29517407 29517407 A - KREMEN1 Frame_Shift_Del p.T140Rfs*142 0.10 TCGA-B7-5816-01 22 29693885 29693885 C T EWSR1 Missense_Mutation p.R460W 0.09 tolerated(0.12) unknown(0) TCGA-B7-5816-01 22 29886074 29886074 A - NEFH Frame_Shift_Del p.K817Rfs*4 0.13 TCGA-B7-5816-01 22 30051659 30051659 G A NF2 Missense_Mutation p.R198Q 0.07 tolerated(0.14) benign(0.425) TCGA-B7-5816-01 22 30888485 30888485 G A SEC14L4 Missense_Mutation p.R214C 0.20 deleterious(0.04) benign(0.065) TCGA-B7-5816-01 22 31583100 31583100 C T RNF185 Missense_Mutation p.S7L 0.11 tolerated(0.08) unknown(0) TCGA-B7-5816-01 22 32009168 32009168 C G SFI1 Missense_Mutation p.A844G 0.13 deleterious(0) probably_damaging(0.999) TCGA-B7-5816-01 22 32302548 32302548 A G DEPDC5 3'UTR 0.07 TCGA-B7-5816-01 22 32651216 32651216 A G SLC5A4 Missense_Mutation p.I34T 0.10 tolerated(0.1) benign(0.008) TCGA-B7-5816-01 22 32753996 32753996 T C RFPL3 5'UTR 0.08 TCGA-B7-5816-01 22 32887092 32887092 A G FBXO7 Missense_Mutation p.I297M 0.09 deleterious(0.03) benign(0.152) TCGA-B7-5816-01 22 36541535 36541535 C T APOL3 Silent p.A112A 0.07 TCGA-B7-5816-01 22 36902213 36902213 G A FOXRED2 Missense_Mutation p.T86M 0.18 deleterious(0) probably_damaging(1) TCGA-B7-5816-01 22 38021856 38021856 C T GGA1 Silent p.G331G 0.17 TCGA-B7-5816-01 22 38130773 38130773 G - TRIOBP Frame_Shift_Del p.G1479Afs*28 0.18 TCGA-B7-5816-01 22 38273988 38273988 G A EIF3L Missense_Mutation p.S462N 0.11 tolerated(0.07) possibly_damaging(0.85) TCGA-B7-5816-01 22 38696761 38696761 C T CSNK1E Missense_Mutation p.R178H 0.07 deleterious_low_confidence(0) benign(0.237) TCGA-B7-5816-01 22 38877444 38877446 CTT - KDELR3 In_Frame_Del p.F195del 0.18 TCGA-B7-5816-01 22 38915929 38915929 A - DMC1 3'UTR 0.25 TCGA-B7-5816-01 22 39441119 39441119 G C APOBEC3F Silent p.L115L 0.08 TCGA-B7-5816-01 22 39496366 39496366 C T APOBEC3H Missense_Mutation p.A28V 0.10 deleterious(0.01) benign(0.186) TCGA-B7-5816-01 22 39777832 39777832 G A SYNGR1 Silent p.P205P 0.14 TCGA-B7-5816-01 22 39811581 39811581 C T TAB1 Missense_Mutation p.R83W 0.11 deleterious(0.01) probably_damaging(0.978) TCGA-B7-5816-01 22 41075620 41075620 A G MCHR1 Silent p.S57S 0.12 TCGA-B7-5816-01 22 41911931 41911931 G A ACO2 Intron 0.24 TCGA-B7-5816-01 22 42464549 42464549 G A NAGA Silent p.L16L 0.13 TCGA-B7-5816-01 22 43213821 43213821 T G ARFGAP3 Missense_Mutation p.Q285H 0.07 tolerated(0.06) benign(0.005) TCGA-B7-5816-01 22 44328952 44328952 C - PNPLA3 Frame_Shift_Del p.P229Rfs*34 0.10 TCGA-B7-5816-01 22 46806395 46806395 T C CELSR1 Silent p.P1611P 0.06 TCGA-B7-5816-01 22 46929685 46929685 G T CELSR1 Missense_Mutation p.P1128Q 0.11 deleterious(0) probably_damaging(0.983) TCGA-B7-5816-01 22 50217218 50217218 A G BRD1 Missense_Mutation p.Y250H 0.09 deleterious(0.02) possibly_damaging(0.819) TCGA-B7-5816-01 22 50278514 50278514 A G ZBED4 Missense_Mutation p.N402D 0.08 tolerated(0.71) benign(0.002) TCGA-B7-5816-01 22 50523301 50523301 C T MLC1 Missense_Mutation p.A11T 0.09 tolerated_low_confidence(0.63) benign(0.26) TCGA-B7-5816-01 22 50656674 50656674 G A TUBGCP6 Silent p.G1704G 0.14 TCGA-B7-5816-01 22 50686566 50686566 C T HDAC10 Missense_Mutation p.A364T 0.17 tolerated(0.19) benign(0.003) TCGA-B7-5816-01 22 51015874 51015874 C T CPT1B Missense_Mutation p.V54M 0.10 tolerated(0.06) benign(0.426) TCGA-B7-5816-01 22 51016265 51016265 G C CPT1B Missense_Mutation p.A27G 0.11 deleterious(0.03) benign(0.048) TCGA-B7-5816-01 22 51117291 51117291 C T SHANK3 Silent p.R181R 0.18 TCGA-B7-5816-01 2 10101557 10101557 G A GRHL1 Missense_Mutation p.V221I 0.12 tolerated(0.25) benign(0.263) TCGA-B7-5816-01 2 101620636 101620636 G A RPL31 Missense_Mutation p.A42T 0.13 deleterious(0.03) benign(0.314) TCGA-B7-5816-01 2 103414327 103414327 C T TMEM182 Missense_Mutation p.R113C 0.11 deleterious(0) probably_damaging(0.993) TCGA-B7-5816-01 2 10581771 10581771 G A ODC1 Missense_Mutation p.R369C 0.11 tolerated(0.15) benign(0.003) TCGA-B7-5816-01 2 105924566 105924566 C T TGFBRAP1 Missense_Mutation p.A65T 0.14 tolerated(0.12) benign(0.034) TCGA-B7-5816-01 2 108455373 108455373 A G RGPD4 Missense_Mutation p.R120G 0.12 deleterious(0) benign(0.012) TCGA-B7-5816-01 2 109002830 109002830 T - SULT1C4 Splice_Site p.X266_splice 0.11 TCGA-B7-5816-01 2 109086795 109086795 T C GCC2 Missense_Mutation p.L337S 0.11 deleterious(0) probably_damaging(0.997) TCGA-B7-5816-01 2 11284096 11284096 G A C2orf50 Silent p.S116S 0.20 TCGA-B7-5816-01 2 122217561 122217561 C T CLASP1 Silent p.T391T 0.13 TCGA-B7-5816-01 2 125530547 125530547 C T CNTNAP5 Missense_Mutation p.S901L 0.08 deleterious(0) benign(0.041) TCGA-B7-5816-01 2 135965210 135965210 A G ZRANB3 Missense_Mutation p.F935L 0.12 tolerated(0.09) benign(0.32) TCGA-B7-5816-01 2 136547160 136547160 G A LCT Silent p.H1848H 0.09 TCGA-B7-5816-01 2 136567247 136567247 T C LCT Silent p.Q890Q 0.10 TCGA-B7-5816-01 2 141081496 141081496 A G LRP1B Silent p.G4160G 0.07 TCGA-B7-5816-01 2 141081540 141081540 C T LRP1B Missense_Mutation p.G4146S 0.15 possibly_damaging(0.855) TCGA-B7-5816-01 2 141291695 141291695 G A LRP1B Nonsense_Mutation p.R2553* 0.29 TCGA-B7-5816-01 2 141356315 141356315 G A LRP1B Missense_Mutation p.T2360I 0.12 possibly_damaging(0.803) TCGA-B7-5816-01 2 141526896 141526896 T C LRP1B Missense_Mutation p.M1882V 0.06 benign(0.019) TCGA-B7-5816-01 2 1491722 1491722 C T TPO Missense_Mutation p.A576V 0.16 deleterious(0) probably_damaging(0.995) TCGA-B7-5816-01 2 152321244 152321244 A - RIF1 Frame_Shift_Del p.K1738Nfs*12 0.11 TCGA-B7-5816-01 2 1544475 1544475 G A TPO Missense_Mutation p.A910T 0.14 tolerated_low_confidence(0.44) benign(0.002) TCGA-B7-5816-01 2 158156134 158156134 G A GALNT5 Missense_Mutation p.G691D 0.13 deleterious(0) probably_damaging(0.999) TCGA-B7-5816-01 2 162081139 162081139 T A TANK Intron 0.12 TCGA-B7-5816-01 2 163003887 163003887 C A GCG Missense_Mutation p.W77L 0.11 deleterious(0.01) probably_damaging(0.969) TCGA-B7-5816-01 2 166771768 166771769 - T TTC21B Frame_Shift_Ins p.M694Nfs*12 0.08 TCGA-B7-5816-01 2 1670060 1670060 T C PXDN Missense_Mutation p.D406G 0.10 deleterious(0) probably_damaging(0.986) TCGA-B7-5816-01 2 168997200 168997200 C T STK39 Missense_Mutation p.V233I 0.07 deleterious(0) possibly_damaging(0.819) TCGA-B7-5816-01 2 170097359 170097359 C - LRP2 Intron 0.10 TCGA-B7-5816-01 2 179320750 179320750 G A DFNB59 Missense_Mutation p.D141N 0.09 tolerated(0.43) benign(0.225) TCGA-B7-5816-01 2 179429562 179429562 A G TTN Silent p.D27099D 0.17 TCGA-B7-5816-01 2 179434797 179434797 G A TTN Silent p.C25354C 0.16 TCGA-B7-5816-01 2 179442553 179442553 T C TTN Missense_Mutation p.Y22867C 0.09 TCGA-B7-5816-01 2 179446303 179446303 C T TTN Missense_Mutation p.R22231H 0.12 TCGA-B7-5816-01 2 179486698 179486698 C T TTN Missense_Mutation p.G14984D 0.11 TCGA-B7-5816-01 2 179579969 179579970 - T TTN Frame_Shift_Ins p.P8649Afs*11 0.11 TCGA-B7-5816-01 2 182400330 182400331 - A ITGA4 3'UTR 0.11 TCGA-B7-5816-01 2 183619751 183619751 A G DNAJC10 Missense_Mutation p.T525A 0.10 deleterious(0) probably_damaging(0.926) TCGA-B7-5816-01 2 183821200 183821200 G A NCKAP1 Missense_Mutation p.R721C 0.06 deleterious(0.01) probably_damaging(0.983) TCGA-B7-5816-01 2 185798372 185798372 G C ZNF804A Missense_Mutation p.A100P 0.06 deleterious(0) probably_damaging(0.99) TCGA-B7-5816-01 2 186673435 186673435 G A FSIP2 Missense_Mutation p.D6557N 0.07 benign(0.006) TCGA-B7-5816-01 2 188245466 188245466 A G CALCRL Missense_Mutation p.V78A 0.08 tolerated(0.06) benign(0.043) TCGA-B7-5816-01 2 190619912 190619912 T C OSGEPL1 Missense_Mutation p.D199G 0.05 deleterious(0) probably_damaging(0.995) TCGA-B7-5816-01 2 19553341 19553341 C T OSR1 Missense_Mutation p.V76M 0.25 tolerated(0.27) benign(0.007) TCGA-B7-5816-01 2 19553481 19553481 C T OSR1 Missense_Mutation p.G29D 0.21 tolerated_low_confidence(0.07) possibly_damaging(0.811) TCGA-B7-5816-01 2 197084840 197084840 C A HECW2 Missense_Mutation p.R1444I 0.10 deleterious(0) probably_damaging(0.993) TCGA-B7-5816-01 2 197990603 197990603 C - ANKRD44 Frame_Shift_Del p.R141Afs*9 0.13 TCGA-B7-5816-01 2 198285757 198285757 T C SF3B1 Missense_Mutation p.E99G 0.13 deleterious(0.02) benign(0.035) TCGA-B7-5816-01 2 201791550 201791550 G A ORC2 Silent p.L331L 0.14 TCGA-B7-5816-01 2 203560705 203560705 C T FAM117B Missense_Mutation p.R235W 0.10 deleterious(0.03) probably_damaging(0.984) TCGA-B7-5816-01 2 20511272 20511272 G A PUM2 Silent p.A167A 0.09 TCGA-B7-5816-01 2 20511425 20511425 C A PUM2 Splice_Site p.X117_splice 0.13 TCGA-B7-5816-01 2 208486553 208486553 A G METTL21A Missense_Mutation p.V79A 0.08 deleterious(0.01) possibly_damaging(0.491) TCGA-B7-5816-01 2 209007376 209007376 T C CRYGB Missense_Mutation p.M172V 0.12 tolerated(0.74) benign(0) TCGA-B7-5816-01 2 212289018 212289018 T C ERBB4 Missense_Mutation p.I910V 0.07 tolerated(1) benign(0.004) TCGA-B7-5816-01 2 21234948 21234948 G A APOB Silent p.L1598L 0.12 TCGA-B7-5816-01 2 212543833 212543833 C T ERBB4 Silent p.S522S 0.13 TCGA-B7-5816-01 2 212568916 212568916 A G ERBB4 Missense_Mutation p.F401S 0.32 deleterious(0.03) benign(0.098) TCGA-B7-5816-01 2 213872278 213872278 C A IKZF2 Nonsense_Mutation p.G463* 0.06 TCGA-B7-5816-01 2 214012446 214012446 C T IKZF2 Missense_Mutation p.S42N 0.06 tolerated(0.1) benign(0.078) TCGA-B7-5816-01 2 216182940 216182940 T C ATIC Silent p.H69H 0.04 TCGA-B7-5816-01 2 218712809 218712809 C T TNS1 Missense_Mutation p.A686T 0.15 tolerated(0.4) benign(0.002) TCGA-B7-5816-01 2 219127900 219127900 T C GPBAR1 Silent p.P151P 0.11 TCGA-B7-5816-01 2 219508771 219508771 C T ZNF142 Missense_Mutation p.R823Q 0.11 deleterious(0) benign(0.238) TCGA-B7-5816-01 2 219855055 219855055 G A CRYBA2 Silent p.S171S 0.11 TCGA-B7-5816-01 2 220349122 220349122 C - SPEG Frame_Shift_Del p.R2315Gfs*38 0.17 TCGA-B7-5816-01 2 223917619 223917619 G A KCNE4 Missense_Mutation p.R24H 0.13 tolerated(0.61) benign(0.001) TCGA-B7-5816-01 2 226447560 226447560 C - NYAP2 Frame_Shift_Del p.R478Dfs*15 0.25 TCGA-B7-5816-01 2 228882136 228882136 T C SPHKAP Missense_Mutation p.E1145G 0.12 deleterious(0) probably_damaging(0.928) TCGA-B7-5816-01 2 229890252 229890252 G A PID1 3'UTR 0.21 TCGA-B7-5816-01 2 231314895 231314895 G A SP100 Missense_Mutation p.E249K 0.11 deleterious(0.02) possibly_damaging(0.502) TCGA-B7-5816-01 2 231988551 231988551 T - HTR2B 5'UTR 0.13 TCGA-B7-5816-01 2 234590941 234590941 T - UGT1A7 Frame_Shift_Del p.S122Qfs*12 0.09 TCGA-B7-5816-01 2 234752914 234752914 C T HJURP Missense_Mutation p.A171T 0.09 tolerated(0.51) possibly_damaging(0.528) TCGA-B7-5816-01 2 237489793 237489793 G A ACKR3 Missense_Mutation p.A229T 0.06 tolerated(0.14) benign(0.29) TCGA-B7-5816-01 2 238253001 238253001 C T COL6A3 Missense_Mutation p.A2554T 0.03 unknown(0) TCGA-B7-5816-01 2 238285492 238285492 G A COL6A3 Missense_Mutation p.S998L 0.11 probably_damaging(0.993) TCGA-B7-5816-01 2 238881799 238881799 C T UBE2F Missense_Mutation p.S17F 0.11 tolerated(0.06) benign(0.001) TCGA-B7-5816-01 2 239988477 239988477 C T HDAC4 Missense_Mutation p.D977N 0.13 deleterious(0.01) benign(0.404) TCGA-B7-5816-01 2 242174570 242174570 C T HDLBP Missense_Mutation p.R1037H 0.15 deleterious(0.01) possibly_damaging(0.758) TCGA-B7-5816-01 2 26683875 26683875 G A OTOF Missense_Mutation p.R1853W 0.07 deleterious(0.01) probably_damaging(0.945) TCGA-B7-5816-01 2 27461031 27461031 A G CAD Missense_Mutation p.I1612M 0.11 deleterious(0) probably_damaging(0.989) TCGA-B7-5816-01 2 30959392 30959392 A G CAPN13 Missense_Mutation p.W567R 0.14 deleterious(0.02) benign(0.065) TCGA-B7-5816-01 2 37543741 37543741 G A PRKD3 5'UTR 0.23 TCGA-B7-5816-01 2 40656250 40656250 C T SLC8A1 Missense_Mutation p.V391I 0.13 tolerated(0.5) benign(0.027) TCGA-B7-5816-01 2 42508059 42508059 A G EML4 Missense_Mutation p.N246S 0.09 tolerated(0.86) benign(0.079) TCGA-B7-5816-01 2 43958648 43958648 C T PLEKHH2 Silent p.H950H 0.13 TCGA-B7-5816-01 2 46378253 46378253 C T PRKCE Missense_Mutation p.A602V 0.16 tolerated(0.12) possibly_damaging(0.699) TCGA-B7-5816-01 2 48925908 48925908 G A LHCGR Missense_Mutation p.P238S 0.19 deleterious(0) probably_damaging(0.996) TCGA-B7-5816-01 2 54481990 54481990 G T TSPYL6 3'UTR 0.26 TCGA-B7-5816-01 2 54856269 54856269 C T SPTBN1 Silent p.Y666Y 0.07 TCGA-B7-5816-01 2 55561622 55561622 T - CCDC88A Frame_Shift_Del p.I779Sfs*4 0.11 TCGA-B7-5816-01 2 56145129 56145129 T C EFEMP1 Missense_Mutation p.N63S 0.07 deleterious(0) probably_damaging(0.999) TCGA-B7-5816-01 2 56149565 56149565 G A EFEMP1 Missense_Mutation p.A4V 0.11 tolerated(1) benign(0) TCGA-B7-5816-01 2 58386659 58386659 A G VRK2 Missense_Mutation p.Y453C 0.09 tolerated_low_confidence(0.09) benign(0.004) TCGA-B7-5816-01 2 60687881 60687881 C T BCL11A Silent p.T722T 0.10 TCGA-B7-5816-01 2 61144153 61144153 G A REL Splice_Site p.X179_splice 0.05 TCGA-B7-5816-01 2 61607348 61607348 A G USP34 Missense_Mutation p.S324P 0.13 deleterious(0) benign(0.095) TCGA-B7-5816-01 2 71187100 71187100 C - ATP6V1B1 Frame_Shift_Del p.E161Rfs*3 0.12 TCGA-B7-5816-01 2 71189973 71189974 - A ATP6V1B1 Frame_Shift_Ins p.H286Afs*23 0.15 TCGA-B7-5816-01 2 71576044 71576044 C A ZNF638 5'UTR 0.06 TCGA-B7-5816-01 2 71883367 71883367 C T DYSF Missense_Mutation p.R1568W 0.12 deleterious(0) probably_damaging(0.999) TCGA-B7-5816-01 2 73477494 73477494 C T CCT7 Silent p.G377G 0.09 TCGA-B7-5816-01 2 73493774 73493774 C T FBXO41 Silent p.T314T 0.23 TCGA-B7-5816-01 2 73800081 73800081 A - ALMS1 Frame_Shift_Del p.S3694Afs*27 0.18 TCGA-B7-5816-01 2 77745589 77745589 T - LRRTM4 Frame_Shift_Del p.K469Rfs*9 0.14 TCGA-B7-5816-01 2 79312250 79312250 G T REG1B 3'UTR 0.19 TCGA-B7-5816-01 2 86067102 86067102 A - ST3GAL5 3'UTR 0.41 TCGA-B7-5816-01 2 86067345 86067345 C T ST3GAL5 Silent p.T393T 0.26 TCGA-B7-5816-01 2 86733008 86733008 C T CHMP3 Silent p.A225A 0.14 TCGA-B7-5816-01 2 88409944 88409944 C T SMYD1 Silent p.R462R 0.15 TCGA-B7-5816-01 2 88870468 88870468 G A EIF2AK3 Missense_Mutation p.T970M 0.09 tolerated(0.25) benign(0.105) TCGA-B7-5816-01 2 90108882 90108882 T C IGKV6D-41 Silent p.I49I 0.07 TCGA-B7-5816-01 2 9017244 9017244 A G MBOAT2 Silent p.I202I 0.13 TCGA-B7-5816-01 2 9541417 9541417 T A ASAP2 Silent p.P946P 0.24 TCGA-B7-5816-01 2 96458026 96458026 G T AC008268.2 RNA 0.11 TCGA-B7-5816-01 2 99203982 99203982 C T INPP4A Missense_Mutation p.R949C 0.10 deleterious(0) probably_damaging(1) TCGA-B7-5816-01 2 99785844 99785845 - T MITD1 Frame_Shift_Ins p.N248Kfs*28 0.14 TCGA-B7-5816-01 3 101284403 101284403 A - TRMT10C Frame_Shift_Del p.K260Nfs*12 0.11 TCGA-B7-5816-01 3 101390079 101390079 A G ZBTB11 Missense_Mutation p.Y225H 0.10 tolerated(0.21) benign(0.093) TCGA-B7-5816-01 3 10140588 10140588 A G FANCD2 Missense_Mutation p.Y1457C 0.09 deleterious_low_confidence(0) unknown(0) TCGA-B7-5816-01 3 105258914 105258914 C T ALCAM Missense_Mutation p.P276S 0.10 deleterious(0.01) probably_damaging(0.987) TCGA-B7-5816-01 3 105400357 105400357 C T CBLB Silent p.T798T 0.06 TCGA-B7-5816-01 3 108373083 108373083 G C DZIP3 Missense_Mutation p.V709L 0.07 tolerated_low_confidence(0.42) benign(0.002) TCGA-B7-5816-01 3 113099764 113099764 A G WDR52 Silent p.S678S 0.07 TCGA-B7-5816-01 3 113187625 113187625 T - SPICE1 Frame_Shift_Del p.K291Nfs*4 0.12 TCGA-B7-5816-01 3 115439777 115439777 C A GAP43 3'UTR 0.10 TCGA-B7-5816-01 3 119165887 119165887 T C TMEM39A Missense_Mutation p.N185D 0.09 tolerated(0.1) possibly_damaging(0.596) TCGA-B7-5816-01 3 120764337 120764337 A - STXBP5L Frame_Shift_Del p.R144Gfs*39 0.16 TCGA-B7-5816-01 3 120957878 120957878 A G STXBP5L Silent p.T415T 0.08 TCGA-B7-5816-01 3 121248490 121248490 A G POLQ Splice_Site p.X370_splice 0.10 TCGA-B7-5816-01 3 121838410 121838411 - T CD86 3'UTR 0.13 TCGA-B7-5816-01 3 122437467 122437467 A G PARP14 Missense_Mutation p.H1490R 0.10 tolerated(0.46) benign(0) TCGA-B7-5816-01 3 127801405 127801405 G A RUVBL1 Missense_Mutation p.R378C 0.12 deleterious(0) probably_damaging(1) TCGA-B7-5816-01 3 128889229 128889229 T C CNBP 3'UTR 0.11 TCGA-B7-5816-01 3 129185901 129185901 C T IFT122 Silent p.D295D 0.10 TCGA-B7-5816-01 3 130716593 130716593 G A ATP2C1 Missense_Mutation p.R830H 0.13 tolerated(0.46) benign(0.023) TCGA-B7-5816-01 3 130744174 130744174 G A ASTE1 Intron 0.13 TCGA-B7-5816-01 3 132400725 132400725 A G NPHP3 3'UTR 0.12 TCGA-B7-5816-01 3 132431994 132431994 A - NPHP3 Frame_Shift_Del p.L365Yfs*5 0.14 TCGA-B7-5816-01 3 133560152 133560152 G A RAB6B Missense_Mutation p.A89V 0.08 deleterious(0) probably_damaging(0.999) TCGA-B7-5816-01 3 13399741 13399741 A T NUP210 Missense_Mutation p.L770Q 0.08 tolerated(0.17) possibly_damaging(0.707) TCGA-B7-5816-01 3 134825395 134825395 G T EPHB1 Missense_Mutation p.R304L 0.12 tolerated(0.23) benign(0.023) TCGA-B7-5816-01 3 135745935 135745935 G A PPP2R3A Missense_Mutation p.A753T 0.16 tolerated(0.24) benign(0.007) TCGA-B7-5816-01 3 136002741 136002741 T C PCCB Silent p.G222G 0.09 TCGA-B7-5816-01 3 139279978 139279978 T C NMNAT3 Silent p.Q174Q 0.05 TCGA-B7-5816-01 3 141162737 141162737 A G ZBTB38 Missense_Mutation p.R503G 0.18 deleterious(0) probably_damaging(0.999) TCGA-B7-5816-01 3 141626115 141626115 A G ATP1B3 Silent p.K115K 0.10 TCGA-B7-5816-01 3 147106593 147106593 C T ZIC4 3'UTR 0.09 TCGA-B7-5816-01 3 14861657 14861657 A T FGD5 Missense_Mutation p.E360V 0.10 deleterious(0) benign(0.085) TCGA-B7-5816-01 3 14967673 14967673 G T FGD5 Missense_Mutation p.G1389C 0.06 deleterious(0) probably_damaging(1) TCGA-B7-5816-01 3 151101884 151101884 A G MED12L Missense_Mutation p.T1567A 0.05 deleterious(0.02) benign(0.009) TCGA-B7-5816-01 3 151163001 151163001 G A IGSF10 Missense_Mutation p.P1590S 0.05 tolerated(0.16) benign(0.423) TCGA-B7-5816-01 3 152554485 152554485 C G P2RY1 Missense_Mutation p.T305R 0.05 deleterious(0) probably_damaging(0.973) TCGA-B7-5816-01 3 160122248 160122248 A G SMC4 Missense_Mutation p.S215G 0.05 tolerated(0.09) benign(0.062) TCGA-B7-5816-01 3 161064099 161064099 G A SPTSSB Missense_Mutation p.R5C 0.04 tolerated(0.13) possibly_damaging(0.51) TCGA-B7-5816-01 3 167086318 167086318 T G ZBBX Missense_Mutation p.E38A 0.05 deleterious(0) probably_damaging(0.997) TCGA-B7-5816-01 3 167507159 167507159 A - SERPINI1 Frame_Shift_Del p.N83Mfs*8 0.13 TCGA-B7-5816-01 3 167742312 167742312 A G GOLIM4 Splice_Site p.X620_splice 0.04 TCGA-B7-5816-01 3 17053509 17053509 A - PLCL2 Frame_Shift_Del p.R766Gfs*5 0.11 TCGA-B7-5816-01 3 171379864 171379864 A G PLD1 Missense_Mutation p.Y776H 0.08 deleterious(0) probably_damaging(0.999) TCGA-B7-5816-01 3 171406484 171406484 C T PLD1 Silent p.P507P 0.06 TCGA-B7-5816-01 3 172474945 172474945 A - ECT2 Frame_Shift_Del p.G161Efs*16 0.10 TCGA-B7-5816-01 3 172523602 172523602 A C ECT2 Missense_Mutation p.I730L 0.10 tolerated(0.19) benign(0.056) TCGA-B7-5816-01 3 172634270 172634270 C T SPATA16 Missense_Mutation p.G447E 0.05 tolerated(0.5) probably_damaging(0.969) TCGA-B7-5816-01 3 173322455 173322455 C T NLGN1 Missense_Mutation p.R23W 0.14 tolerated_low_confidence(0.1) benign(0.087) TCGA-B7-5816-01 3 17447931 17447931 C A TBC1D5 Missense_Mutation p.R85S 0.22 deleterious(0) probably_damaging(0.997) TCGA-B7-5816-01 3 178916726 178916726 G A PIK3CA Missense_Mutation p.R38H 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-B7-5816-01 3 180349276 180349276 T C CCDC39 Missense_Mutation p.Q660R 0.05 deleterious(0.01) possibly_damaging(0.492) TCGA-B7-5816-01 3 182810260 182810260 T - MCCC1 Frame_Shift_Del p.K70Nfs*20 0.11 TCGA-B7-5816-01 3 182933788 182933788 G A MCF2L2 Missense_Mutation p.A822V 0.07 deleterious(0.01) benign(0.008) TCGA-B7-5816-01 3 183226231 183226231 A G KLHL6 Silent p.V175V 0.06 TCGA-B7-5816-01 3 183446626 183446626 C A YEATS2 Missense_Mutation p.L267I 0.09 tolerated(0.15) possibly_damaging(0.475) TCGA-B7-5816-01 3 183776370 183776370 T - HTR3C Frame_Shift_Del p.Y240Mfs*13 0.09 TCGA-B7-5816-01 3 184024258 184024258 C T PSMD2 Missense_Mutation p.A642V 0.07 tolerated(0.28) benign(0.001) TCGA-B7-5816-01 3 184044344 184044344 C A EIF4G1 Silent p.L1091L 0.10 TCGA-B7-5816-01 3 184100091 184100092 - T CHRD Intron 0.11 TCGA-B7-5816-01 3 18456690 18456690 C T SATB1 Nonsense_Mutation p.W184* 0.11 TCGA-B7-5816-01 3 184870603 184870603 C T C3orf70 Silent p.A3A 0.12 TCGA-B7-5816-01 3 185237031 185237032 CT - LIPH Frame_Shift_Del p.S262Lfs*9 0.10 TCGA-B7-5816-01 3 185407235 185407235 C T IGF2BP2 Silent p.P195P 0.04 TCGA-B7-5816-01 3 186395475 186395475 C T HRG Missense_Mutation p.L461F 0.06 deleterious(0) probably_damaging(0.997) TCGA-B7-5816-01 3 187447537 187447537 G T BCL6 Missense_Mutation p.P219H 0.06 deleterious(0) possibly_damaging(0.907) TCGA-B7-5816-01 3 190986180 190986180 T - UTS2B 3'UTR 0.16 TCGA-B7-5816-01 3 192125831 192125831 G T FGF12 Missense_Mutation p.P61Q 0.05 tolerated(0.18) benign(0.016) TCGA-B7-5816-01 3 194118947 194118947 G A GP5 Missense_Mutation p.P22L 0.14 deleterious(0.01) probably_damaging(0.997) TCGA-B7-5816-01 3 194790481 194790481 T C XXYLT1 Missense_Mutation p.Y382C 0.08 deleterious(0) probably_damaging(0.935) TCGA-B7-5816-01 3 196386848 196386848 C A NRROS Missense_Mutation p.L112M 0.09 deleterious(0) probably_damaging(0.999) TCGA-B7-5816-01 3 24164248 24164248 G A THRB 3'UTR 0.09 TCGA-B7-5816-01 3 2613167 2613167 C A CNTN4 5'UTR 0.10 TCGA-B7-5816-01 3 27326096 27326096 C T NEK10 Missense_Mutation p.V671I 0.07 tolerated(1) benign(0.003) TCGA-B7-5816-01 3 31712295 31712295 A G OSBPL10 Missense_Mutation p.V636A 0.09 deleterious(0.05) possibly_damaging(0.734) TCGA-B7-5816-01 3 32754743 32754744 - T CNOT10 Frame_Shift_Ins p.L214Ffs*13 0.11 TCGA-B7-5816-01 3 37151141 37151141 A G LRRFIP2 Intron 0.08 TCGA-B7-5816-01 3 37340400 37340400 T G GOLGA4 Silent p.R319R 0.07 TCGA-B7-5816-01 3 37574822 37574822 C T ITGA9 Missense_Mutation p.T464M 0.09 deleterious(0.03) probably_damaging(0.982) TCGA-B7-5816-01 3 39230481 39230481 G A XIRP1 Silent p.D152D 0.13 TCGA-B7-5816-01 3 402087 402087 A G CHL1 Missense_Mutation p.N429S 0.10 tolerated(0.12) benign(0.003) TCGA-B7-5816-01 3 41268763 41268763 A - CTNNB1 Frame_Shift_Del p.K335Nfs*10 0.11 TCGA-B7-5816-01 3 41275213 41275213 T C CTNNB1 Missense_Mutation p.I460T 0.10 deleterious(0.01) probably_damaging(0.983) TCGA-B7-5816-01 3 42679502 42679502 C T NKTR Missense_Mutation p.S769L 0.10 tolerated_low_confidence(0.41) probably_damaging(0.95) TCGA-B7-5816-01 3 45530204 45530204 G A LARS2 Missense_Mutation p.S380N 0.10 tolerated(0.19) benign(0.02) TCGA-B7-5816-01 3 45554714 45554714 A C LARS2 Missense_Mutation p.E616D 0.09 tolerated(0.52) benign(0.007) TCGA-B7-5816-01 3 46712551 46712551 A C ALS2CL Missense_Mutation p.C929G 0.07 deleterious(0) probably_damaging(1) TCGA-B7-5816-01 3 47614327 47614327 G A CSPG5 Missense_Mutation p.R411C 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-B7-5816-01 3 48423258 48423258 G T FBXW12 Nonsense_Mutation p.G352* 0.13 TCGA-B7-5816-01 3 48454330 48454330 G T PLXNB1 Missense_Mutation p.L1559M 0.11 tolerated(0.26) probably_damaging(0.94) TCGA-B7-5816-01 3 48612871 48612871 G - COL7A1 Frame_Shift_Del p.P2029Lfs*177 0.19 TCGA-B7-5816-01 3 48667139 48667139 T C SLC26A6 Missense_Mutation p.H512R 0.09 tolerated(0.64) benign(0.001) TCGA-B7-5816-01 3 48689431 48689431 G - CELSR3 Frame_Shift_Del p.S1935Afs*4 0.19 TCGA-B7-5816-01 3 48697746 48697746 A G CELSR3 Silent p.S774S 0.13 TCGA-B7-5816-01 3 48726074 48726074 C A IP6K2 Missense_Mutation p.G305C 0.12 deleterious(0) possibly_damaging(0.643) TCGA-B7-5816-01 3 48820505 48820505 G A PRKAR2A Silent p.L152L 0.25 TCGA-B7-5816-01 3 49044327 49044327 G A P4HTM Missense_Mutation p.R560H 0.14 tolerated_low_confidence(0.78) benign(0.014) TCGA-B7-5816-01 3 49934714 49934714 G A MST1R Missense_Mutation p.R728W 0.10 tolerated(0.08) benign(0.013) TCGA-B7-5816-01 3 50197137 50197137 G A SEMA3F Missense_Mutation p.A28T 0.14 tolerated(0.47) benign(0.018) TCGA-B7-5816-01 3 50334195 50334195 T C NAT6 Missense_Mutation p.R256G 0.13 tolerated(0.37) benign(0.006) TCGA-B7-5816-01 3 51430462 51430462 T - RBM15B Frame_Shift_Del p.L546Wfs*163 0.11 TCGA-B7-5816-01 3 51897123 51897123 C T IQCF2 Missense_Mutation p.R78W 0.12 deleterious(0) probably_damaging(0.994) TCGA-B7-5816-01 3 51970287 51970287 G A RRP9 Missense_Mutation p.R241W 0.16 deleterious(0) probably_damaging(0.999) TCGA-B7-5816-01 3 52257754 52257754 C - TLR9 Frame_Shift_Del p.G347Vfs*51 0.12 TCGA-B7-5816-01 3 52295479 52295479 T C WDR82 Missense_Mutation p.M115V 0.15 tolerated(0.25) benign(0.07) TCGA-B7-5816-01 3 52485532 52485532 C A TNNC1 Missense_Mutation p.G110V 0.08 deleterious(0) probably_damaging(1) TCGA-B7-5816-01 3 52556145 52556145 G A STAB1 Missense_Mutation p.D2122N 0.10 tolerated(0.16) benign(0.045) TCGA-B7-5816-01 3 52651438 52651438 T - PBRM1 Frame_Shift_Del p.K553Rfs*16 0.09 TCGA-B7-5816-01 3 52730292 52730292 C T GLT8D1 Missense_Mutation p.A164T 0.12 tolerated(0.44) benign(0.148) TCGA-B7-5816-01 3 53326499 53326499 G A DCP1A Missense_Mutation p.T328I 0.06 tolerated(0.11) benign(0.087) TCGA-B7-5816-01 3 53834368 53834370 AGA - CACNA1D In_Frame_Del p.E1695del 0.09 TCGA-B7-5816-01 3 56653342 56653342 C A CCDC66 Missense_Mutation p.Q808K 0.09 tolerated(0.05) possibly_damaging(0.69) TCGA-B7-5816-01 3 57545230 57545230 T - PDE12 Intron 0.11 TCGA-B7-5816-01 3 62254810 62254810 G A PTPRG Missense_Mutation p.R992H 0.16 deleterious(0) probably_damaging(0.99) TCGA-B7-5816-01 3 64133333 64133333 G A PRICKLE2 Missense_Mutation p.A278V 0.09 deleterious(0) probably_damaging(1) TCGA-B7-5816-01 3 64527080 64527080 G A ADAMTS9 Missense_Mutation p.A1768V 0.08 tolerated(0.06) possibly_damaging(0.819) TCGA-B7-5816-01 3 65349248 65349248 T C MAGI1 Silent p.G1129G 0.08 TCGA-B7-5816-01 3 69153703 69153703 G A ARL6IP5 Silent p.P161P 0.14 TCGA-B7-5816-01 3 88040823 88040823 T - HTR1F Frame_Shift_Del p.F310Lfs*2 0.11 TCGA-B7-5816-01 3 93593039 93593039 A G PROS1 3'UTR 0.05 TCGA-B7-5816-01 3 97851699 97851699 C T OR5H1 Missense_Mutation p.P53L 0.09 deleterious(0.01) benign(0.033) TCGA-B7-5816-01 3 9984784 9984784 T C CRELD1 Missense_Mutation p.C281R 0.14 deleterious(0) probably_damaging(0.999) TCGA-B7-5816-01 4 100205628 100205628 C T ADH1A Silent p.S165S 0.09 TCGA-B7-5816-01 4 103987582 103987582 T - SLC9B2 Frame_Shift_Del p.K58Sfs*15 0.11 TCGA-B7-5816-01 4 10445372 10445372 T - ZNF518B Frame_Shift_Del p.T861Lfs*13 0.09 TCGA-B7-5816-01 4 104640800 104640800 T C TACR3 Missense_Mutation p.I11M 0.28 deleterious_low_confidence(0) benign(0.001) TCGA-B7-5816-01 4 106638749 106638749 G A GSTCD Splice_Site 0.08 TCGA-B7-5816-01 4 107845346 107845346 G A DKK2 Missense_Mutation p.P182L 0.10 tolerated(0.29) probably_damaging(0.996) TCGA-B7-5816-01 4 110610337 110610337 A G CASP6 3'UTR 0.25 TCGA-B7-5816-01 4 110789030 110789030 T C LRIT3 Missense_Mutation p.C275R 0.11 deleterious(0.03) probably_damaging(1) TCGA-B7-5816-01 4 113333128 113333128 C T ALPK1 Missense_Mutation p.T141M 0.12 deleterious(0.01) possibly_damaging(0.87) TCGA-B7-5816-01 4 113462384 113462384 T C C4orf21 Missense_Mutation p.H1880R 0.09 deleterious(0) probably_damaging(1) TCGA-B7-5816-01 4 119665262 119665262 C T SEC24D Missense_Mutation p.V626M 0.20 deleterious(0) probably_damaging(1) TCGA-B7-5816-01 4 122833134 122833134 T G TRPC3 Missense_Mutation p.T486P 0.08 tolerated(0.22) benign(0.002) TCGA-B7-5816-01 4 123156162 123156162 T C KIAA1109 Silent p.I1186I 0.14 TCGA-B7-5816-01 4 123176338 123176338 T C KIAA1109 Missense_Mutation p.V2093A 0.10 benign(0.013) TCGA-B7-5816-01 4 123202734 123202735 - A KIAA1109 Frame_Shift_Ins p.T2950Nfs*6 0.12 TCGA-B7-5816-01 4 126372586 126372586 C T FAT4 Missense_Mutation p.T3472I 0.09 possibly_damaging(0.598) TCGA-B7-5816-01 4 129793512 129793512 T G JADE1 3'UTR 0.16 TCGA-B7-5816-01 4 141832415 141832415 T G RNF150 Missense_Mutation p.T361P 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-B7-5816-01 4 146474973 146474973 C T SMAD1 Silent p.A345A 0.07 TCGA-B7-5816-01 4 15055785 15055785 C A CPEB2 Missense_Mutation p.P802H 0.13 tolerated_low_confidence(0.45) benign(0.108) TCGA-B7-5816-01 4 154624401 154624401 T C TLR2 Silent p.N114N 0.10 TCGA-B7-5816-01 4 155254379 155254379 G - DCHS2 Frame_Shift_Del p.P495Lfs*58 0.09 TCGA-B7-5816-01 4 155665738 155665738 G A LRAT Missense_Mutation p.R87H 0.12 tolerated(0.58) benign(0.025) TCGA-B7-5816-01 4 159790317 159790317 G T FNIP2 Missense_Mutation p.K843N 0.16 tolerated(0.08) benign(0.029) TCGA-B7-5816-01 4 16597436 16597436 G A LDB2 Silent p.L100L 0.11 TCGA-B7-5816-01 4 166259034 166259034 T C MSMO1 Missense_Mutation p.Y117H 0.15 tolerated(0.22) benign(0.06) TCGA-B7-5816-01 4 167020518 167020518 G A TLL1 Missense_Mutation p.D916N 0.21 tolerated(0.13) benign(0.046) TCGA-B7-5816-01 4 169173784 169173785 - T DDX60 Frame_Shift_Ins p.T1194Nfs*11 0.08 TCGA-B7-5816-01 4 1725278 1725278 G T TACC3 Missense_Mutation p.V44L 0.09 tolerated(0.11) probably_damaging(0.991) TCGA-B7-5816-01 4 175225417 175225417 A C CEP44 Missense_Mutation p.K135T 0.05 deleterious(0.01) probably_damaging(0.951) TCGA-B7-5816-01 4 177017731 177017731 C G WDR17 Missense_Mutation p.Q21E 0.06 deleterious_low_confidence(0.01) probably_damaging(0.949) TCGA-B7-5816-01 4 183609430 183609430 G T TENM3 Missense_Mutation p.C716F 0.17 deleterious(0) probably_damaging(0.962) TCGA-B7-5816-01 4 183664511 183664511 G A TENM3 Missense_Mutation p.D1190N 0.18 deleterious(0) benign(0.005) TCGA-B7-5816-01 4 184175055 184175055 A G WWC2 Missense_Mutation p.T367A 0.14 tolerated(0.17) benign(0.11) TCGA-B7-5816-01 4 184622874 184622874 C T TRAPPC11 Missense_Mutation p.A959V 0.07 tolerated(0.05) possibly_damaging(0.861) TCGA-B7-5816-01 4 185339701 185339701 G A IRF2 Missense_Mutation p.R117W 0.11 deleterious(0) probably_damaging(0.936) TCGA-B7-5816-01 4 186381154 186381154 T C CCDC110 Missense_Mutation p.N196S 0.11 tolerated(0.09) benign(0.068) TCGA-B7-5816-01 4 187455155 187455155 A - MTNR1A Frame_Shift_Del p.F247Lfs*8 0.12 TCGA-B7-5816-01 4 188924074 188924074 C T ZFP42 Missense_Mutation p.A38V 0.09 tolerated(0.07) benign(0.032) TCGA-B7-5816-01 4 25676133 25676133 G A SLC34A2 Missense_Mutation p.G447D 0.22 deleterious(0.02) possibly_damaging(0.656) TCGA-B7-5816-01 4 2733739 2733739 A G FAM193A 3'UTR 0.12 TCGA-B7-5816-01 4 2831342 2831342 C - SH3BP2 Frame_Shift_Del p.P295Rfs*40 0.19 TCGA-B7-5816-01 4 3040188 3040188 C - GRK4 Frame_Shift_Del p.P545Rfs*20 0.10 TCGA-B7-5816-01 4 3133117 3133117 A - HTT Frame_Shift_Del p.N699Mfs*9 0.10 TCGA-B7-5816-01 4 3432718 3432718 G A RGS12 Intron 0.14 TCGA-B7-5816-01 4 36130292 36130292 T - ARAP2 Frame_Shift_Del p.K1168Rfs*8 0.12 TCGA-B7-5816-01 4 41015678 41015678 G - APBB2 Frame_Shift_Del p.L253Wfs*87 0.12 TCGA-B7-5816-01 4 46930594 46930594 C T GABRA4 Missense_Mutation p.R438H 0.11 tolerated_low_confidence(0.09) benign(0.003) TCGA-B7-5816-01 4 47525066 47525066 G A ATP10D Missense_Mutation p.V175I 0.09 tolerated(0.15) probably_damaging(0.954) TCGA-B7-5816-01 4 56304470 56304470 C A CLOCK Missense_Mutation p.Q780H 0.12 deleterious(0.02) possibly_damaging(0.453) TCGA-B7-5816-01 4 651213 651213 G A PDE6B Missense_Mutation p.R444H 0.09 deleterious(0.04) benign(0.048) TCGA-B7-5816-01 4 6611524 6611524 G T MAN2B2 Splice_Site p.X669_splice 0.04 TCGA-B7-5816-01 4 6612993 6612993 G A MAN2B2 Missense_Mutation p.G851R 0.20 tolerated(0.81) benign(0.021) TCGA-B7-5816-01 4 68784942 68784942 T - TMPRSS11A Frame_Shift_Del p.N237Ifs*17 0.13 TCGA-B7-5816-01 4 69433932 69433933 - A UGT2B17 Frame_Shift_Ins p.M91Yfs*6 0.13 TCGA-B7-5816-01 4 71275429 71275429 T - PROL1 Frame_Shift_Del p.A132Lfs*13 0.10 TCGA-B7-5816-01 4 71508334 71508334 T A ENAM Missense_Mutation p.N397K 0.11 deleterious(0.01) probably_damaging(0.991) TCGA-B7-5816-01 4 72897782 72897782 C T NPFFR2 Missense_Mutation p.A55V 0.10 deleterious_low_confidence(0) benign(0) TCGA-B7-5816-01 4 83347273 83347273 C T HNRNPDL Missense_Mutation p.S401N 0.12 tolerated_low_confidence(0.16) benign(0.007) TCGA-B7-5816-01 4 84230574 84230574 G A HPSE Missense_Mutation p.S322F 0.15 deleterious(0.01) possibly_damaging(0.811) TCGA-B7-5816-01 4 90169649 90169649 T - GPRIN3 Frame_Shift_Del p.K538Rfs*8 0.11 TCGA-B7-5816-01 4 91701696 91701696 G A CCSER1 Intron 0.14 TCGA-B7-5816-01 4 94138155 94138155 C T GRID2 Intron 0.14 TCGA-B7-5816-01 5 101748695 101748695 T - SLCO6A1 Frame_Shift_Del p.K542Rfs*13 0.19 TCGA-B7-5816-01 5 101834249 101834249 C T SLCO6A1 Silent p.E100E 0.05 TCGA-B7-5816-01 5 102361017 102361017 A - PAM Frame_Shift_Del p.K891Nfs*32 0.09 TCGA-B7-5816-01 5 10258614 10258614 C T CCT5 Silent p.Y280Y 0.08 TCGA-B7-5816-01 5 110407479 110407479 G T TSLP 5'UTR 0.11 TCGA-B7-5816-01 5 110836639 110836639 C T STARD4 Intron 0.09 TCGA-B7-5816-01 5 112349031 112349031 C T DCP2 Silent p.D371D 0.06 TCGA-B7-5816-01 5 112676242 112676242 C A MCC Nonsense_Mutation p.G201* 0.07 TCGA-B7-5816-01 5 114860032 114860032 T C FEM1C Silent p.L609L 0.07 TCGA-B7-5816-01 5 115358121 115358121 T C CTD-2287O16.3 Silent p.Y12Y 0.08 TCGA-B7-5816-01 5 118728727 118728727 C T TNFAIP8 Missense_Mutation p.A83V 0.12 deleterious(0) possibly_damaging(0.454) TCGA-B7-5816-01 5 121362798 121362798 A - SRFBP1 Frame_Shift_Del p.I425Lfs*7 0.09 TCGA-B7-5816-01 5 122139221 122139221 G A SNX2 Missense_Mutation p.D186N 0.10 deleterious(0) probably_damaging(0.984) TCGA-B7-5816-01 5 126156790 126156790 A G LMNB1 Missense_Mutation p.D450G 0.09 deleterious(0.01) benign(0.112) TCGA-B7-5816-01 5 126860552 126860552 C G PRRC1 Missense_Mutation p.H145D 0.06 deleterious_low_confidence(0.01) probably_damaging(0.926) TCGA-B7-5816-01 5 127483327 127483327 T C SLC12A2 Missense_Mutation p.V596A 0.07 deleterious(0.03) probably_damaging(0.969) TCGA-B7-5816-01 5 129521508 129521508 T - CHSY3 3'UTR 0.09 TCGA-B7-5816-01 5 131295281 131295281 A - ACSL6 Frame_Shift_Del p.L660Wfs*5 0.08 TCGA-B7-5816-01 5 131543466 131543466 C T P4HA2 Missense_Mutation p.V339I 0.07 tolerated(0.18) probably_damaging(0.996) TCGA-B7-5816-01 5 133292616 133292616 A G C5orf15 Silent p.H244H 0.08 TCGA-B7-5816-01 5 133914618 133914618 G A JADE2 Missense_Mutation p.G662R 0.08 tolerated(0.33) benign(0.004) TCGA-B7-5816-01 5 134679016 134679016 T - H2AFY Frame_Shift_Del p.N296Tfs*11 0.09 TCGA-B7-5816-01 5 135583370 135583370 C T TRPC7 Missense_Mutation p.A545T 0.14 deleterious(0) probably_damaging(0.989) TCGA-B7-5816-01 5 137891653 137891653 A G HSPA9 3'UTR 0.08 TCGA-B7-5816-01 5 138253547 138253547 C T CTNNA1 Silent p.V502V 0.07 TCGA-B7-5816-01 5 13841160 13841161 - T DNAH5 Frame_Shift_Ins p.I1855Nfs*6 0.11 TCGA-B7-5816-01 5 139909134 139909134 A G ANKHD1 Silent p.P2201P 0.05 TCGA-B7-5816-01 5 140076918 140076918 G A HARS2 Missense_Mutation p.G375D 0.05 deleterious(0.03) benign(0.052) TCGA-B7-5816-01 5 140166090 140166090 G A PCDHA1 Missense_Mutation p.R72K 0.08 tolerated_low_confidence(0.09) benign(0.013) TCGA-B7-5816-01 5 140174888 140174888 G A PCDHA2 Silent p.P113P 0.05 TCGA-B7-5816-01 5 140250228 140250228 G A PCDHA11 Missense_Mutation p.G514S 0.08 deleterious_low_confidence(0) probably_damaging(1) TCGA-B7-5816-01 5 140307318 140307318 C T PCDHAC1 Nonsense_Mutation p.R281* 0.07 TCGA-B7-5816-01 5 140474700 140474700 A C PCDHB2 Missense_Mutation p.Q109P 0.09 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-B7-5816-01 5 140481206 140481206 G A PCDHB3 Missense_Mutation p.G325R 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.787) TCGA-B7-5816-01 5 140482261 140482261 G A PCDHB3 Silent p.A676A 0.04 TCGA-B7-5816-01 5 140482556 140482556 G A PCDHB3 Missense_Mutation p.V775I 0.07 tolerated_low_confidence(0.4) benign(0.005) TCGA-B7-5816-01 5 140516493 140516493 C A PCDHB5 Missense_Mutation p.Q493K 0.11 tolerated_low_confidence(0.08) benign(0.003) TCGA-B7-5816-01 5 140531173 140531173 C T PCDHB6 Silent p.N445N 0.42 TCGA-B7-5816-01 5 140553418 140553418 G T PCDHB7 Silent p.V334V 0.06 TCGA-B7-5816-01 5 140559148 140559148 C T PCDHB8 Silent p.N511N 0.13 TCGA-B7-5816-01 5 140573645 140573645 A G PCDHB10 Missense_Mutation p.N507S 0.07 deleterious_low_confidence(0.02) possibly_damaging(0.733) TCGA-B7-5816-01 5 140588755 140588755 G C PCDHB12 Missense_Mutation p.R92S 0.05 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-B7-5816-01 5 140595303 140595303 C T PCDHB13 Silent p.H536H 0.05 TCGA-B7-5816-01 5 140595729 140595729 G A PCDHB13 Silent p.P678P 0.08 TCGA-B7-5816-01 5 140682918 140682918 C T SLC25A2 Missense_Mutation p.G172E 0.06 deleterious(0) probably_damaging(1) TCGA-B7-5816-01 5 140724035 140724035 A G PCDHGA3 Silent p.L145L 0.08 TCGA-B7-5816-01 5 140744549 140744549 G A PCDHGA5 Missense_Mutation p.G218R 0.07 deleterious_low_confidence(0) probably_damaging(1) TCGA-B7-5816-01 5 140762728 140762728 G T PCDHGA7 Missense_Mutation p.G88C 0.07 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-B7-5816-01 5 140807527 140807527 G A PCDHGB6 Intron 0.07 TCGA-B7-5816-01 5 140856480 140856480 T C PCDHGC3 Missense_Mutation p.V266A 0.07 deleterious(0.01) possibly_damaging(0.654) TCGA-B7-5816-01 5 141026256 141026256 C T FCHSD1 Missense_Mutation p.A320T 0.11 tolerated(0.84) benign(0.14) TCGA-B7-5816-01 5 141248141 141248141 A T PCDH1 Missense_Mutation p.V299D 0.13 deleterious(0) probably_damaging(0.999) TCGA-B7-5816-01 5 141314083 141314083 T G KIAA0141 Missense_Mutation p.F361V 0.09 deleterious(0) possibly_damaging(0.874) TCGA-B7-5816-01 5 141515313 141515313 C T NDFIP1 Missense_Mutation p.R101W 0.05 deleterious(0) probably_damaging(0.993) TCGA-B7-5816-01 5 145317822 145317822 G A SH3RF2 Missense_Mutation p.A111T 0.17 tolerated(0.55) benign(0.002) TCGA-B7-5816-01 5 145428723 145428723 T C SH3RF2 Missense_Mutation p.C413R 0.09 tolerated(0.3) benign(0) TCGA-B7-5816-01 5 149676950 149676950 G A ARSI Missense_Mutation p.P513S 0.12 deleterious(0) probably_damaging(1) TCGA-B7-5816-01 5 150311085 150311085 A G ZNF300P1 RNA 0.09 TCGA-B7-5816-01 5 150584990 150584990 T C CCDC69 Missense_Mutation p.H32R 0.08 deleterious(0.05) benign(0.006) TCGA-B7-5816-01 5 150917444 150917444 C T FAT2 Missense_Mutation p.A3035T 0.06 probably_damaging(0.979) TCGA-B7-5816-01 5 154065380 154065383 TTTA - MIR1303 RNA 0.18 TCGA-B7-5816-01 5 154393781 154393781 T G KIF4B Missense_Mutation p.L121R 0.11 tolerated(0.65) benign(0.014) TCGA-B7-5816-01 5 156192 156192 G A PLEKHG4B Missense_Mutation p.A383T 0.21 tolerated(0.88) benign(0) TCGA-B7-5816-01 5 157181069 157181069 C T LSM11 Missense_Mutation p.R216W 0.07 deleterious(0.03) probably_damaging(0.958) TCGA-B7-5816-01 5 159463806 159463806 A C TTC1 Missense_Mutation p.K167T 0.11 deleterious(0.01) probably_damaging(0.914) TCGA-B7-5816-01 5 173317434 173317434 A G CPEB4 Missense_Mutation p.H233R 0.06 deleterious_low_confidence(0.05) benign(0.101) TCGA-B7-5816-01 5 176012966 176012966 A G CDHR2 Missense_Mutation p.I916V 0.09 tolerated(0.05) benign(0.387) TCGA-B7-5816-01 5 176477895 176477895 C T ZNF346 Missense_Mutation p.R221C 0.11 deleterious(0.02) possibly_damaging(0.761) TCGA-B7-5816-01 5 178555036 178555036 G A ADAMTS2 Silent p.N847N 0.14 TCGA-B7-5816-01 5 179994114 179994114 T - CNOT6 Frame_Shift_Del p.L251Wfs*2 0.16 TCGA-B7-5816-01 5 180047265 180047267 ATG - FLT4 In_Frame_Del p.I816del 0.11 TCGA-B7-5816-01 5 23527040 23527040 C T PRDM9 Missense_Mutation p.R615W 0.06 deleterious(0) probably_damaging(0.998) TCGA-B7-5816-01 5 32090692 32090692 G T PDZD2 Missense_Mutation p.G2380W 0.11 deleterious(0.01) probably_damaging(0.997) TCGA-B7-5816-01 5 32355834 32355834 T - ZFR 3'UTR 0.15 TCGA-B7-5816-01 5 34020600 34020600 A - C1QTNF3 3'UTR 0.13 TCGA-B7-5816-01 5 34043142 34043142 C T C1QTNF3 Missense_Mutation p.S30N 0.09 deleterious_low_confidence(0.01) benign(0.074) TCGA-B7-5816-01 5 35047909 35047909 C T AGXT2 Splice_Site p.X30_splice 0.07 TCGA-B7-5816-01 5 37364349 37364349 G A NUP155 Missense_Mutation p.H99Y 0.06 deleterious(0) possibly_damaging(0.624) TCGA-B7-5816-01 5 38438416 38438416 T C EGFLAM Missense_Mutation p.F775L 0.06 tolerated(0.48) benign(0.003) TCGA-B7-5816-01 5 41149516 41149516 T G C6 Missense_Mutation p.K817T 0.17 tolerated(0.4) benign(0.026) TCGA-B7-5816-01 5 52097317 52097317 A G PELO Silent p.S267S 0.12 TCGA-B7-5816-01 5 52366056 52366056 C T ITGA2 Missense_Mutation p.A734V 0.13 tolerated(0.38) benign(0.005) TCGA-B7-5816-01 5 55407516 55407517 - T ANKRD55 Frame_Shift_Ins p.N353Kfs*28 0.08 TCGA-B7-5816-01 5 58270635 58270635 G A PDE4D Silent p.C762C 0.09 TCGA-B7-5816-01 5 59943279 59943279 A G DEPDC1B Silent p.N132N 0.11 TCGA-B7-5816-01 5 61789842 61789842 G A IPO11 Missense_Mutation p.R534H 0.14 deleterious(0) probably_damaging(0.996) TCGA-B7-5816-01 5 63256782 63256782 A G HTR1A Silent p.N255N 0.08 TCGA-B7-5816-01 5 63510254 63510254 C T RNF180 Silent p.S367S 0.10 TCGA-B7-5816-01 5 64020298 64020298 T - SREK1IP1 Frame_Shift_Del p.K129Nfs*29 0.11 TCGA-B7-5816-01 5 64931134 64931134 G T TRAPPC13 Missense_Mutation p.R18L 0.11 deleterious(0) possibly_damaging(0.702) TCGA-B7-5816-01 5 74892828 74892828 A G POLK Silent p.E770E 0.08 TCGA-B7-5816-01 5 77471506 77471506 A G AP3B1 Missense_Mutation p.Y371H 0.07 tolerated(0.19) benign(0.147) TCGA-B7-5816-01 5 78375234 78375234 T C BHMT2 Missense_Mutation p.V70A 0.09 deleterious(0.04) possibly_damaging(0.878) TCGA-B7-5816-01 5 79378294 79378294 G A THBS4 Missense_Mutation p.R917H 0.12 deleterious(0) probably_damaging(0.997) TCGA-B7-5816-01 5 80600661 80600661 T - ZCCHC9 Frame_Shift_Del p.F29Lfs*40 0.11 TCGA-B7-5816-01 5 82835480 82835480 C T VCAN Missense_Mutation p.H2220Y 0.13 deleterious(0) benign(0.033) TCGA-B7-5816-01 5 82876243 82876243 C T VCAN Missense_Mutation p.S3394L 0.06 deleterious(0) probably_damaging(0.921) TCGA-B7-5816-01 5 86690311 86690311 A - CCNH Intron 0.11 TCGA-B7-5816-01 5 89797794 89797794 A - POLR3G Frame_Shift_Del p.M145Wfs*90 0.25 TCGA-B7-5816-01 5 92923860 92923860 C G NR2F1 Missense_Mutation p.A234G 0.05 deleterious(0.01) benign(0.232) TCGA-B7-5816-01 5 94863727 94863727 G A TTC37 Missense_Mutation p.T375M 0.07 tolerated(0.11) benign(0.31) TCGA-B7-5816-01 6 109690119 109690119 G A CD164 Nonsense_Mutation p.Q177* 0.10 TCGA-B7-5816-01 6 109814734 109814734 A G AK9 Silent p.Y1858Y 0.09 TCGA-B7-5816-01 6 111694064 111694064 C T REV3L Missense_Mutation p.V1832M 0.10 tolerated_low_confidence(0.07) benign(0.24) TCGA-B7-5816-01 6 112493865 112493865 C A LAMA4 Missense_Mutation p.R500M 0.07 tolerated(0.05) possibly_damaging(0.695) TCGA-B7-5816-01 6 116446526 116446526 T C COL10A1 Missense_Mutation p.I44V 0.08 deleterious_low_confidence(0.04) unknown(0) TCGA-B7-5816-01 6 118803034 118803034 T - CEP85L Frame_Shift_Del p.K554Nfs*16 0.11 TCGA-B7-5816-01 6 119324113 119324113 T - FAM184A Frame_Shift_Del p.N680Mfs*11 0.08 TCGA-B7-5816-01 6 121768698 121768698 C T GJA1 Silent p.G235G 0.09 TCGA-B7-5816-01 6 12292633 12292633 A G EDN1 Missense_Mutation p.S42G 0.12 tolerated(0.22) benign(0.006) TCGA-B7-5816-01 6 125621702 125621702 T C HDDC2 Missense_Mutation p.D63G 0.08 tolerated(0.11) benign(0.009) TCGA-B7-5816-01 6 130761733 130761733 C T TMEM200A Missense_Mutation p.R56W 0.10 deleterious(0) probably_damaging(0.993) TCGA-B7-5816-01 6 131206297 131206297 T C EPB41L2 Missense_Mutation p.D591G 0.07 tolerated(0.06) benign(0.123) TCGA-B7-5816-01 6 133804207 133804207 T - EYA4 Frame_Shift_Del p.H384Tfs*20 0.10 TCGA-B7-5816-01 6 133844197 133844197 T C EYA4 Silent p.S540S 0.07 TCGA-B7-5816-01 6 135239445 135239445 C T ALDH8A1 3'UTR 0.18 TCGA-B7-5816-01 6 137528210 137528210 A G IFNGR1 Silent p.P30P 0.07 TCGA-B7-5816-01 6 138727163 138727163 T C HEBP2 Silent p.G98G 0.10 TCGA-B7-5816-01 6 146755150 146755150 A - GRM1 Frame_Shift_Del p.S936Vfs*9 0.10 TCGA-B7-5816-01 6 151907169 151907169 C T CCDC170 Missense_Mutation p.A413V 0.10 deleterious(0.01) benign(0.098) TCGA-B7-5816-01 6 152534877 152534877 A - SYNE1 Frame_Shift_Del p.L7455Cfs*18 0.10 TCGA-B7-5816-01 6 154414636 154414636 C T OPRM1 Intron 0.08 TCGA-B7-5816-01 6 155578018 155578018 G T TIAM2 Missense_Mutation p.E1623D 0.07 tolerated_low_confidence(0.23) benign(0.001) TCGA-B7-5816-01 6 159458069 159458069 C G TAGAP Missense_Mutation p.S329T 0.10 tolerated(0.45) benign(0.03) TCGA-B7-5816-01 6 160240343 160240343 C A PNLDC1 Nonsense_Mutation p.Y486* 0.08 TCGA-B7-5816-01 6 163987695 163987695 T - QKI Intron 0.17 TCGA-B7-5816-01 6 168265382 168265382 T A MLLT4 Missense_Mutation p.L86Q 0.22 deleterious(0) probably_damaging(1) TCGA-B7-5816-01 6 170102881 170102881 A G C6orf120 Missense_Mutation p.H109R 0.07 tolerated(0.12) benign(0.092) TCGA-B7-5816-01 6 17632903 17632903 T C NUP153 Silent p.P879P 0.10 TCGA-B7-5816-01 6 17788023 17788023 T - KIF13A Frame_Shift_Del p.V1116Sfs*23 0.15 TCGA-B7-5816-01 6 24415248 24415250 TGT - MRS2 Intron 0.14 TCGA-B7-5816-01 6 24423946 24423946 T - MRS2 3'UTR 0.24 TCGA-B7-5816-01 6 25850802 25850802 G T SLC17A3 Missense_Mutation p.S293Y 0.14 deleterious(0) probably_damaging(0.999) TCGA-B7-5816-01 6 26273222 26273222 T C HIST1H2BI Missense_Mutation p.S7P 0.08 deleterious_low_confidence(0.03) benign(0.031) TCGA-B7-5816-01 6 28876773 28876773 G A TRIM27 Missense_Mutation p.T288M 0.10 deleterious(0.04) benign(0.076) TCGA-B7-5816-01 6 29394491 29394491 G C OR11A1 Missense_Mutation p.Q310E 0.25 tolerated(0.76) benign(0.014) TCGA-B7-5816-01 6 29395018 29395018 G - OR11A1 Frame_Shift_Del p.P134Hfs*3 0.09 TCGA-B7-5816-01 6 30122214 30122214 G A TRIM10 Silent p.S326S 0.12 TCGA-B7-5816-01 6 30166571 30166571 G A TRIM26 Nonsense_Mutation p.R104* 0.19 TCGA-B7-5816-01 6 30303538 30303538 G A TRIM39 Missense_Mutation p.R189H 0.23 deleterious(0.02) probably_damaging(0.972) TCGA-B7-5816-01 6 30557938 30557938 C T ABCF1 Missense_Mutation p.A749V 0.08 deleterious(0) probably_damaging(0.967) TCGA-B7-5816-01 6 31595600 31595600 G A PRRC2A Missense_Mutation p.R450Q 0.16 unknown(0) TCGA-B7-5816-01 6 31785400 31785400 G T HSPA1A Missense_Mutation p.G623W 0.23 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-B7-5816-01 6 31919243 31919243 T C CFB Silent p.T1196T 0.11 TCGA-B7-5816-01 6 31928060 31928060 C A SKIV2L Silent p.S100S 0.08 TCGA-B7-5816-01 6 32032630 32032630 C T TNXB Missense_Mutation p.R2270H 0.19 probably_damaging(0.997) TCGA-B7-5816-01 6 3224988 3224988 C T TUBB2B Silent p.A445A 0.20 TCGA-B7-5816-01 6 32713678 32713678 C T HLA-DQA2 Silent p.L148L 0.03 TCGA-B7-5816-01 6 33179529 33179529 C T RING1 Missense_Mutation p.A290V 0.04 deleterious(0.04) unknown(0) TCGA-B7-5816-01 6 35706234 35706234 C A ARMC12 Missense_Mutation p.T155N 0.10 deleterious(0) benign(0.348) TCGA-B7-5816-01 6 38562049 38562049 G T BTBD9 Silent p.L80L 0.09 TCGA-B7-5816-01 6 41652277 41652277 G A TFEB 3'UTR 0.15 TCGA-B7-5816-01 6 42986439 42986439 C A KLHDC3 Missense_Mutation p.L268I 0.07 tolerated(0.09) possibly_damaging(0.597) TCGA-B7-5816-01 6 44278779 44278779 G A AARS2 Missense_Mutation p.A234V 0.07 tolerated(0.12) benign(0.345) TCGA-B7-5816-01 6 44371563 44371563 A - CDC5L Frame_Shift_Del p.R188Efs*9 0.09 TCGA-B7-5816-01 6 44922278 44922278 A T SUPT3H Missense_Mutation p.V227D 0.08 tolerated(0.16) benign(0.026) TCGA-B7-5816-01 6 52615457 52615457 T G GSTA2 Missense_Mutation p.K196T 0.24 deleterious(0.02) benign(0.084) TCGA-B7-5816-01 6 52764820 52764822 AGA - GSTA3 In_Frame_Del p.L109del 0.14 TCGA-B7-5816-01 6 52993350 52993350 C T GCM1 Missense_Mutation p.S322N 0.10 tolerated(0.57) benign(0.002) TCGA-B7-5816-01 6 76022804 76022804 G A FILIP1 Missense_Mutation p.T915I 0.10 deleterious(0) probably_damaging(0.951) TCGA-B7-5816-01 6 80383443 80383444 - C SH3BGRL2 Frame_Shift_Ins p.E56Gfs*16 0.15 TCGA-B7-5816-01 6 82904289 82904289 T - IBTK Frame_Shift_Del p.K1082Sfs*47 0.10 TCGA-B7-5816-01 6 84417621 84417621 C T SNAP91 Missense_Mutation p.R9Q 0.12 deleterious(0) unknown(0) TCGA-B7-5816-01 6 86332298 86332298 G A SYNCRIP Missense_Mutation p.R304C 0.11 tolerated(0.06) benign(0.182) TCGA-B7-5816-01 6 90461210 90461210 T C MDN1 Missense_Mutation p.Y1056C 0.06 probably_damaging(1) TCGA-B7-5816-01 6 90577950 90577950 T C CASP8AP2 RNA 0.10 TCGA-B7-5816-01 7 100388641 100388641 A G ZAN Missense_Mutation p.M2478V 0.14 unknown(0) TCGA-B7-5816-01 7 100678670 100678670 A G MUC17 Missense_Mutation p.T1325A 0.10 unknown(0) TCGA-B7-5816-01 7 100866016 100866016 G A ZNHIT1 Missense_Mutation p.G52S 0.07 tolerated(1) benign(0) TCGA-B7-5816-01 7 101844917 101844917 C - CUX1 Frame_Shift_Del p.P793Rfs*26 0.19 TCGA-B7-5816-01 7 103038409 103038409 T C SLC26A5 Missense_Mutation p.N314S 0.09 tolerated(0.18) benign(0.009) TCGA-B7-5816-01 7 103824586 103824586 C T ORC5 Missense_Mutation p.V240M 0.14 deleterious(0) possibly_damaging(0.685) TCGA-B7-5816-01 7 106522606 106522606 T A PIK3CG Missense_Mutation p.D861E 0.21 deleterious(0) possibly_damaging(0.897) TCGA-B7-5816-01 7 106820374 106820374 T C HBP1 Silent p.N12N 0.11 TCGA-B7-5816-01 7 107692696 107692696 T G LAMB4 Missense_Mutation p.Q1254H 0.11 deleterious(0.02) benign(0.023) TCGA-B7-5816-01 7 107738871 107738871 G A LAMB4 Missense_Mutation p.A446V 0.08 tolerated(0.05) possibly_damaging(0.906) TCGA-B7-5816-01 7 107824928 107824928 C A NRCAM Missense_Mutation p.M722I 0.13 tolerated(1) benign(0.001) TCGA-B7-5816-01 7 11521576 11521576 G A THSD7A Missense_Mutation p.A619V 0.06 tolerated(0.32) benign(0.298) TCGA-B7-5816-01 7 116146264 116146264 A G CAV2 3'UTR 0.11 TCGA-B7-5816-01 7 117364693 117364694 CT - CTTNBP2 Frame_Shift_Del p.S1452Wfs*24 0.12 TCGA-B7-5816-01 7 117865046 117865046 G A ANKRD7 Missense_Mutation p.M54I 0.10 tolerated(0.21) benign(0.005) TCGA-B7-5816-01 7 121659280 121659280 T G PTPRZ1 Missense_Mutation p.F1649C 0.31 deleterious(0.02) benign(0.046) TCGA-B7-5816-01 7 121773676 121773676 G T AASS Silent p.A35A 0.11 TCGA-B7-5816-01 7 122269329 122269329 C T CADPS2 Silent p.R280R 0.18 TCGA-B7-5816-01 7 122342177 122342177 C T RNF148 Missense_Mutation p.V210I 0.09 tolerated(0.67) benign(0.017) TCGA-B7-5816-01 7 126883204 126883204 C A GRM8 Missense_Mutation p.A19S 0.14 tolerated_low_confidence(0.4) benign(0.008) TCGA-B7-5816-01 7 128409239 128409239 A C CALU 3'UTR 0.07 TCGA-B7-5816-01 7 128483511 128483511 C T FLNC Silent p.A897A 0.11 TCGA-B7-5816-01 7 128588360 128588362 AGA - IRF5 In_Frame_Del p.K428del 0.09 TCGA-B7-5816-01 7 128597304 128597304 G A TNPO3 3'UTR 0.10 TCGA-B7-5816-01 7 134130027 134130027 T G AKR1B1 Missense_Mutation p.S291R 0.10 deleterious(0.02) possibly_damaging(0.888) TCGA-B7-5816-01 7 135380132 135380132 G A SLC13A4 Silent p.L334L 0.11 TCGA-B7-5816-01 7 139168322 139168322 C A KLRG2 Nonsense_Mutation p.G23* 0.15 TCGA-B7-5816-01 7 141422976 141422976 G T WEE2 Missense_Mutation p.G308V 0.08 tolerated(0.06) probably_damaging(0.93) TCGA-B7-5816-01 7 141478568 141478568 A T TAS2R4 Missense_Mutation p.S94C 0.10 tolerated(0.31) benign(0.032) TCGA-B7-5816-01 7 142334872 142334872 C A TRBV20-1 Silent p.A98A 0.10 TCGA-B7-5816-01 7 148454195 148454195 C T CUL1 Missense_Mutation p.R146C 0.09 deleterious(0) benign(0.035) TCGA-B7-5816-01 7 148801971 148801971 T C ZNF425 Missense_Mutation p.Q331R 0.17 tolerated(0.5) benign(0.016) TCGA-B7-5816-01 7 150648700 150648700 C T KCNH2 Missense_Mutation p.G594D 0.08 deleterious(0) probably_damaging(0.996) TCGA-B7-5816-01 7 158109597 158109597 A G PTPRN2 Missense_Mutation p.V64A 0.12 tolerated(0.33) benign(0.058) TCGA-B7-5816-01 7 20418790 20418790 G A ITGB8 Missense_Mutation p.V169I 0.12 tolerated(0.05) benign(0.104) TCGA-B7-5816-01 7 22197474 22197474 T - RAPGEF5 Frame_Shift_Del p.K366Rfs*22 0.10 TCGA-B7-5816-01 7 23023639 23023639 T - FAM126A Frame_Shift_Del p.N26Ifs*6 0.16 TCGA-B7-5816-01 7 2472729 2472729 C T CHST12 Missense_Mutation p.S152L 0.06 tolerated(0.78) benign(0.02) TCGA-B7-5816-01 7 2618111 2618111 G A IQCE Missense_Mutation p.G194D 0.13 deleterious(0.02) benign(0.335) TCGA-B7-5816-01 7 27934856 27934856 C T JAZF1 Missense_Mutation p.R123H 0.20 tolerated(0.11) possibly_damaging(0.736) TCGA-B7-5816-01 7 30795374 30795374 A G INMT Silent p.E233E 0.09 TCGA-B7-5816-01 7 33644526 33644526 A C BBS9 Missense_Mutation p.E857D 0.22 tolerated_low_confidence(0.46) benign(0.011) TCGA-B7-5816-01 7 37780104 37780104 T C GPR141 Missense_Mutation p.S37P 0.09 tolerated(0.11) possibly_damaging(0.879) TCGA-B7-5816-01 7 41729419 41729419 T C INHBA Silent p.S370S 0.06 TCGA-B7-5816-01 7 44047210 44047210 G T SPDYE1 Intron 0.11 TCGA-B7-5816-01 7 44561375 44561376 - GG NPC1L1 Frame_Shift_Ins p.S964Rfs*25 0.14 TCGA-B7-5816-01 7 45932646 45932647 - G IGFBP1 Frame_Shift_Ins p.D248Rfs*9 0.09 TCGA-B7-5816-01 7 47408631 47408631 C T TNS3 Missense_Mutation p.V538I 0.13 tolerated(0.1) benign(0.007) TCGA-B7-5816-01 7 48318563 48318563 T C ABCA13 Missense_Mutation p.L2591S 0.06 probably_damaging(0.974) TCGA-B7-5816-01 7 48428702 48428702 G A ABCA13 Missense_Mutation p.V3847M 0.08 probably_damaging(0.986) TCGA-B7-5816-01 7 50444307 50444307 G A IKZF1 Silent p.A79A 0.09 TCGA-B7-5816-01 7 50514060 50514060 T - FIGNL1 Frame_Shift_Del p.K309Sfs*16 0.16 TCGA-B7-5816-01 7 5266905 5266905 A G WIPI2 Missense_Mutation p.N315D 0.11 deleterious(0.01) benign(0.017) TCGA-B7-5816-01 7 5270512 5270512 C T WIPI2 Silent p.D433D 0.09 TCGA-B7-5816-01 7 5334526 5334526 C T SLC29A4 Silent p.L194L 0.10 TCGA-B7-5816-01 7 5352201 5352201 T C TNRC18 Missense_Mutation p.N2774S 0.13 unknown(0) TCGA-B7-5816-01 7 5354738 5354738 G A TNRC18 Missense_Mutation p.R2302C 0.27 possibly_damaging(0.689) TCGA-B7-5816-01 7 55224509 55224509 C T EGFR Silent p.T397T 0.11 TCGA-B7-5816-01 7 57194347 57194347 A T ZNF479 Missense_Mutation p.L40I 0.08 deleterious(0) probably_damaging(0.998) TCGA-B7-5816-01 7 6204516 6204516 G A CYTH3 3'UTR 0.14 TCGA-B7-5816-01 7 64168653 64168653 T A ZNF107 Silent p.I657I 0.18 TCGA-B7-5816-01 7 65546853 65546853 G A ASL Missense_Mutation p.A26T 0.12 tolerated(0.17) benign(0.037) TCGA-B7-5816-01 7 71571249 71571249 C T CALN1 Missense_Mutation p.R92Q 0.19 tolerated(0.06) benign(0.031) TCGA-B7-5816-01 7 73245572 73245572 C T CLDN4 Missense_Mutation p.A14V 0.13 deleterious(0) possibly_damaging(0.597) TCGA-B7-5816-01 7 73638400 73638400 A G LAT2 Silent p.S167S 0.11 TCGA-B7-5816-01 7 74565197 74565197 T C GTF2IRD2B 3'UTR 0.07 TCGA-B7-5816-01 7 74565198 74565198 C T GTF2IRD2B 3'UTR 0.07 TCGA-B7-5816-01 7 74824186 74824186 G T GATSL2 Missense_Mutation p.L61I 0.14 tolerated(0.06) benign(0.405) TCGA-B7-5816-01 7 79828642 79828642 T C GNAI1 Silent p.G135G 0.19 TCGA-B7-5816-01 7 84628962 84628962 G A SEMA3D Missense_Mutation p.R710W 0.09 deleterious(0) possibly_damaging(0.808) TCGA-B7-5816-01 7 87173503 87173503 G A ABCB1 Missense_Mutation p.A718V 0.12 deleterious(0) probably_damaging(0.969) TCGA-B7-5816-01 7 92762328 92762328 C T SAMD9L Missense_Mutation p.R986H 0.26 deleterious(0) probably_damaging(0.947) TCGA-B7-5816-01 7 92762978 92762979 - T SAMD9L Frame_Shift_Ins p.N769Kfs*5 0.08 TCGA-B7-5816-01 7 92763654 92763654 A - SAMD9L Frame_Shift_Del p.L544Wfs*2 0.11 TCGA-B7-5816-01 7 95799420 95799420 C A SLC25A13 Missense_Mutation p.R417S 0.06 deleterious(0) probably_damaging(0.93) TCGA-B7-5816-01 7 95849015 95849015 A G SLC25A13 Intron 0.05 TCGA-B7-5816-01 7 98567888 98567888 C T TRRAP Missense_Mutation p.R2549W 0.07 benign(0.443) TCGA-B7-5816-01 7 99032463 99032463 T A ATP5J2-PTCD1 Missense_Mutation p.T184S 0.15 deleterious(0.03) possibly_damaging(0.773) TCGA-B7-5816-01 7 99123463 99123463 T C ZKSCAN5 Missense_Mutation p.L267P 0.12 tolerated(0.11) probably_damaging(0.94) TCGA-B7-5816-01 7 99627895 99627895 G T ZKSCAN1 Missense_Mutation p.M232I 0.12 tolerated(0.09) probably_damaging(0.968) TCGA-B7-5816-01 7 99709350 99709350 C T TAF6 Splice_Site p.X337_splice 0.12 TCGA-B7-5816-01 7 99802719 99802719 T - STAG3 Frame_Shift_Del p.S1016Pfs*16 0.15 TCGA-B7-5816-01 7 99951132 99951132 G A PILRB 5'UTR 0.33 TCGA-B7-5816-01 8 100847902 100847902 A G VPS13B Missense_Mutation p.E3318G 0.09 tolerated(0.5) benign(0.403) TCGA-B7-5816-01 8 101075932 101075932 T A RGS22 Missense_Mutation p.D355V 0.09 tolerated(0.23) benign(0.081) TCGA-B7-5816-01 8 101078439 101078439 A G RGS22 Missense_Mutation p.V227A 0.05 tolerated(0.05) benign(0.004) TCGA-B7-5816-01 8 101253220 101253220 A G SPAG1 Missense_Mutation p.I917M 0.12 deleterious(0) benign(0.282) TCGA-B7-5816-01 8 103287986 103287986 C T UBR5 Missense_Mutation p.E2194K 0.19 deleterious(0.02) possibly_damaging(0.824) TCGA-B7-5816-01 8 103306223 103306224 - A UBR5 Frame_Shift_Ins p.V1437Cfs*65 0.08 TCGA-B7-5816-01 8 104343682 104343682 A G FZD6 Missense_Mutation p.H689R 0.09 tolerated_low_confidence(0.17) benign(0.004) TCGA-B7-5816-01 8 10465956 10465956 C T RP1L1 Silent p.Q1884Q 0.12 TCGA-B7-5816-01 8 10470816 10470816 C T RP1L1 Silent p.S264S 0.05 TCGA-B7-5816-01 8 110590145 110590145 C A SYBU Missense_Mutation p.R279I 0.08 deleterious(0) probably_damaging(0.998) TCGA-B7-5816-01 8 11189448 11189448 A G SLC35G5 Missense_Mutation p.H278R 0.05 deleterious(0) probably_damaging(0.999) TCGA-B7-5816-01 8 113243835 113243835 A C CSMD3 Silent p.T3589T 0.06 TCGA-B7-5816-01 8 116426263 116426263 T C TRPS1 Silent p.K1291K 0.05 TCGA-B7-5816-01 8 116426653 116426653 A G TRPS1 Silent p.N1161N 0.09 TCGA-B7-5816-01 8 11643661 11643661 C T NEIL2 Missense_Mutation p.A293V 0.21 tolerated(0.32) benign(0.005) TCGA-B7-5816-01 8 116616779 116616779 C T TRPS1 Missense_Mutation p.G473R 0.06 tolerated_low_confidence(0.28) probably_damaging(0.981) TCGA-B7-5816-01 8 117868492 117868492 C T RAD21 Missense_Mutation p.V284I 0.06 tolerated(0.41) benign(0.014) TCGA-B7-5816-01 8 12043973 12043973 T C FAM86B1 Silent p.A176A 0.10 TCGA-B7-5816-01 8 120744180 120744180 G T TAF2 Missense_Mutation p.P1195H 0.08 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-B7-5816-01 8 124358423 124358423 G T ATAD2 Missense_Mutation p.A812D 0.11 deleterious(0) probably_damaging(0.963) TCGA-B7-5816-01 8 126044600 126044600 C T KIAA0196 Nonsense_Mutation p.W1073* 0.15 TCGA-B7-5816-01 8 139164159 139164159 C A FAM135B Missense_Mutation p.K853N 0.12 tolerated(0.52) benign(0) TCGA-B7-5816-01 8 139255234 139255234 A C FAM135B Missense_Mutation p.L207R 0.11 deleterious(0) probably_damaging(0.939) TCGA-B7-5816-01 8 139691881 139691881 T C COL22A1 Silent p.A1017A 0.06 TCGA-B7-5816-01 8 140630896 140630896 G T KCNK9 Missense_Mutation p.L244I 0.12 deleterious(0.02) probably_damaging(0.946) TCGA-B7-5816-01 8 141712786 141712786 T C PTK2 Silent p.S750S 0.06 TCGA-B7-5816-01 8 141828420 141828420 C A PTK2 Missense_Mutation p.G275C 0.09 deleterious(0) probably_damaging(0.997) TCGA-B7-5816-01 8 144407688 144407688 C T TOP1MT Missense_Mutation p.A167T 0.06 tolerated(0.16) benign(0.081) TCGA-B7-5816-01 8 144590009 144590009 C T ZC3H3 Missense_Mutation p.R541H 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-B7-5816-01 8 144590012 144590012 T C ZC3H3 Missense_Mutation p.Y540C 0.06 deleterious(0) probably_damaging(0.999) TCGA-B7-5816-01 8 145060588 145060588 C A PARP10 5'UTR 0.07 TCGA-B7-5816-01 8 145619157 145619158 - C CPSF1 Frame_Shift_Ins p.A1319Gfs*3 0.16 TCGA-B7-5816-01 8 145740422 145740422 G A RECQL4 Silent p.A506A 0.15 TCGA-B7-5816-01 8 15998531 15998531 T C MSR1 Intron 0.06 TCGA-B7-5816-01 8 17612117 17612117 C T MTUS1 Silent p.P400P 0.11 TCGA-B7-5816-01 8 17739683 17739683 G A FGL1 Silent p.L23L 0.13 TCGA-B7-5816-01 8 17796319 17796319 G A PCM1 Missense_Mutation p.R138Q 0.11 deleterious(0.01) possibly_damaging(0.805) TCGA-B7-5816-01 8 1844563 1844563 C A ARHGEF10 Missense_Mutation p.A502E 0.11 tolerated(0.08) benign(0.313) TCGA-B7-5816-01 8 2024225 2024225 T C MYOM2 Silent p.A375A 0.10 TCGA-B7-5816-01 8 21958207 21958207 G A FAM160B2 Missense_Mutation p.V482M 0.09 tolerated(0.17) benign(0.028) TCGA-B7-5816-01 8 21980012 21980012 G A HR Silent p.G705G 0.17 TCGA-B7-5816-01 8 21984903 21984903 C - HR Frame_Shift_Del p.G351Vfs*12 0.22 TCGA-B7-5816-01 8 22006196 22006196 C T LGI3 Missense_Mutation p.R375H 0.13 deleterious(0) probably_damaging(0.993) TCGA-B7-5816-01 8 22053004 22053004 G A BMP1 Missense_Mutation p.G557R 0.05 deleterious(0) possibly_damaging(0.596) TCGA-B7-5816-01 8 24813503 24813503 G A CTD-2168K21.2 5'Flank 0.21 TCGA-B7-5816-01 8 27516873 27516873 C A SCARA3 Missense_Mutation p.L396I 0.10 deleterious(0.01) possibly_damaging(0.804) TCGA-B7-5816-01 8 2832084 2832084 A G CSMD1 Missense_Mutation p.Y2877H 0.10 possibly_damaging(0.741) TCGA-B7-5816-01 8 28974391 28974391 A G KIF13B Missense_Mutation p.L1265P 0.08 deleterious(0) probably_damaging(0.994) TCGA-B7-5816-01 8 3000057 3000057 C T CSMD1 Silent p.T2057T 0.08 TCGA-B7-5816-01 8 3474261 3474261 T C CSMD1 Silent p.E356E 0.07 TCGA-B7-5816-01 8 38133958 38133958 G A WHSC1L1 Nonsense_Mutation p.R1310* 0.11 TCGA-B7-5816-01 8 38851174 38851174 G A TM2D2 Silent p.G107G 0.15 TCGA-B7-5816-01 8 41530009 41530009 A G ANK1 Silent p.S1694S 0.09 TCGA-B7-5816-01 8 42716936 42716936 A G RNF170 Silent p.H153H 0.09 TCGA-B7-5816-01 8 48733488 48733488 T C PRKDC Missense_Mutation p.Y3042C 0.05 probably_damaging(0.919) TCGA-B7-5816-01 8 49987868 49987868 C T C8orf22 3'UTR 0.19 TCGA-B7-5816-01 8 51314811 51314811 G A SNTG1 Silent p.E23E 0.12 TCGA-B7-5816-01 8 57025621 57025621 C T MOS Silent p.S307S 0.06 TCGA-B7-5816-01 8 59548042 59548042 G A NSMAF Silent p.S102S 0.10 TCGA-B7-5816-01 8 65508989 65508989 A C CYP7B1 3'UTR 0.18 TCGA-B7-5816-01 8 6605313 6605313 G A AGPAT5 Missense_Mutation p.D237N 0.14 tolerated(0.46) benign(0.001) TCGA-B7-5816-01 8 67786678 67786678 A G MCMDC2 Missense_Mutation p.E71G 0.08 tolerated(0.36) benign(0.018) TCGA-B7-5816-01 8 68140284 68140284 T - ARFGEF1 Frame_Shift_Del p.I1169* 0.11 TCGA-B7-5816-01 8 68930142 68930142 A G PREX2 Missense_Mutation p.E68G 0.08 tolerated(0.13) probably_damaging(0.996) TCGA-B7-5816-01 8 70536271 70536271 A C SULF1 Missense_Mutation p.E563D 0.16 tolerated(0.68) benign(0.012) TCGA-B7-5816-01 8 70585382 70585382 A C SLCO5A1 Missense_Mutation p.W757G 0.05 deleterious(0) probably_damaging(0.987) TCGA-B7-5816-01 8 70981746 70981746 C T PRDM14 Missense_Mutation p.S117N 0.15 tolerated(0.08) benign(0.031) TCGA-B7-5816-01 8 72754820 72754820 G A MSC 3'UTR 0.09 TCGA-B7-5816-01 8 77763422 77763422 G A ZFHX4 Missense_Mutation p.R1422Q 0.11 benign(0.417) TCGA-B7-5816-01 8 81553576 81553576 C A ZNF704 3'UTR 0.20 TCGA-B7-5816-01 8 86050680 86050680 C T LRRCC1 Missense_Mutation p.A937V 0.06 deleterious(0.02) benign(0.075) TCGA-B7-5816-01 8 87229784 87229784 A - SLC7A13 Frame_Shift_Del p.F365Sfs*10 0.14 TCGA-B7-5816-01 8 90937188 90937188 G A OSGIN2 Missense_Mutation p.A360T 0.09 deleterious(0) probably_damaging(0.976) TCGA-B7-5816-01 8 93029468 93029468 A G RUNX1T1 Missense_Mutation p.F82S 0.06 tolerated(0.06) benign(0.081) TCGA-B7-5816-01 8 9564375 9564375 G A TNKS Missense_Mutation p.A442T 0.07 deleterious(0.01) probably_damaging(0.998) TCGA-B7-5816-01 8 9567797 9567798 TC - TNKS Intron 0.09 TCGA-B7-5816-01 8 99168468 99168468 A - POP1 Frame_Shift_Del p.T752Lfs*12 0.12 TCGA-B7-5816-01 8 99440939 99440939 C A KCNS2 Silent p.A244A 0.13 TCGA-B7-5816-01 9 100136907 100136907 A C CCDC180 Missense_Mutation p.K1605N 0.06 deleterious(0) possibly_damaging(0.607) TCGA-B7-5816-01 9 100433488 100433488 T - NCBP1 3'UTR 0.10 TCGA-B7-5816-01 9 100672422 100672422 C T C9orf156 Missense_Mutation p.A296T 0.05 tolerated(0.54) benign(0.118) TCGA-B7-5816-01 9 100899955 100899955 G A CORO2A Missense_Mutation p.P73S 0.13 tolerated(0.07) probably_damaging(0.992) TCGA-B7-5816-01 9 102988442 102988442 C T INVS Silent p.H124H 0.11 TCGA-B7-5816-01 9 102988444 102988444 G T INVS Missense_Mutation p.R125M 0.12 deleterious(0) possibly_damaging(0.612) TCGA-B7-5816-01 9 103111628 103111628 T C TEX10 Silent p.K6K 0.07 TCGA-B7-5816-01 9 103204464 103204464 A - MSANTD3 Frame_Shift_Del p.I84Lfs*10 0.13 TCGA-B7-5816-01 9 104124938 104124938 C A BAAT Missense_Mutation p.Q343H 0.06 deleterious(0.03) benign(0.16) TCGA-B7-5816-01 9 106882440 106882440 A - SMC2 Frame_Shift_Del p.K711Sfs*5 0.08 TCGA-B7-5816-01 9 107331882 107331882 C T OR13C8 Missense_Mutation p.A145V 0.12 deleterious(0.04) possibly_damaging(0.546) TCGA-B7-5816-01 9 107366985 107366985 T - OR13C2 Frame_Shift_Del p.K308Nfs*4 0.13 TCGA-B7-5816-01 9 107550741 107550741 A G ABCA1 Missense_Mutation p.L2012P 0.06 deleterious(0) possibly_damaging(0.861) TCGA-B7-5816-01 9 114140903 114140904 - G KIAA0368 Frame_Shift_Ins p.Q1482Pfs*20 0.10 TCGA-B7-5816-01 9 114199319 114199319 G A KIAA0368 Silent p.G381G 0.16 TCGA-B7-5816-01 9 115945145 115945145 A G FKBP15 Silent p.Y605Y 0.12 TCGA-B7-5816-01 9 116044975 116044975 A - PRPF4 Frame_Shift_Del p.K150Rfs*25 0.10 TCGA-B7-5816-01 9 116857359 116857359 T C KIF12 Missense_Mutation p.T217A 0.11 deleterious(0.02) benign(0.059) TCGA-B7-5816-01 9 118949475 118949475 G - PAPPA Frame_Shift_Del p.V154Sfs*21 0.11 TCGA-B7-5816-01 9 123751934 123751934 A - C5 Frame_Shift_Del p.H1023Tfs*17 0.13 TCGA-B7-5816-01 9 125007550 125007550 G A RBM18 Missense_Mutation p.T133I 0.08 tolerated(0.09) benign(0.022) TCGA-B7-5816-01 9 125659721 125659721 T G RC3H2 Missense_Mutation p.E23A 0.09 tolerated(0.18) probably_damaging(0.931) TCGA-B7-5816-01 9 130473600 130473600 C T C9orf117 Missense_Mutation p.A227V 0.08 tolerated(0.15) possibly_damaging(0.765) TCGA-B7-5816-01 9 130648823 130648823 C T ST6GALNAC6 3'UTR 0.23 TCGA-B7-5816-01 9 130652960 130652960 C T ST6GALNAC6 Missense_Mutation p.M220I 0.11 possibly_damaging(0.706) TCGA-B7-5816-01 9 130687433 130687433 G A PIP5KL1 Silent p.H290H 0.09 TCGA-B7-5816-01 9 131023773 131023773 C A GOLGA2 Missense_Mutation p.S404I 0.11 deleterious(0.01) benign(0.438) TCGA-B7-5816-01 9 13107093 13107093 G A MPDZ Silent p.D1999D 0.17 TCGA-B7-5816-01 9 131388889 131388889 G A SPTAN1 Missense_Mutation p.V2167I 0.17 tolerated(0.07) probably_damaging(0.999) TCGA-B7-5816-01 9 131503844 131503844 G A ZER1 Silent p.N569N 0.26 TCGA-B7-5816-01 9 131899905 131899905 T C PPP2R4 Silent p.D240D 0.12 TCGA-B7-5816-01 9 133376466 133376466 C T ASS1 3'UTR 0.11 TCGA-B7-5816-01 9 134073173 134073173 C T NUP214 Missense_Mutation p.S1431F 0.13 possibly_damaging(0.452) TCGA-B7-5816-01 9 134394318 134394318 A G POMT1 Missense_Mutation p.N509S 0.09 deleterious(0.01) benign(0.072) TCGA-B7-5816-01 9 136131620 136131620 G T RP11-430N14.4 5'Flank 0.15 TCGA-B7-5816-01 9 136218179 136218179 C T RPL7A Silent p.L253L 0.11 TCGA-B7-5816-01 9 136226847 136226847 G A SURF2 Missense_Mutation p.G120E 0.16 probably_damaging(0.915) TCGA-B7-5816-01 9 136270521 136270523 CAC - C9orf96 In_Frame_Del p.T675del 0.09 TCGA-B7-5816-01 9 138413289 138413289 C A LCN1 5'UTR 0.17 TCGA-B7-5816-01 9 139272334 139272334 G A SNAPC4 Silent p.S1315S 0.12 TCGA-B7-5816-01 9 139407497 139407497 A G NOTCH1 Missense_Mutation p.C815R 0.19 deleterious(0) probably_damaging(0.965) TCGA-B7-5816-01 9 139726231 139726231 G A RABL6 Missense_Mutation p.V173M 0.15 deleterious(0) probably_damaging(0.991) TCGA-B7-5816-01 9 139945517 139945517 C - ENTPD2 Frame_Shift_Del p.G204Vfs*171 0.17 TCGA-B7-5816-01 9 15171910 15171910 T - TTC39B 3'UTR 0.28 TCGA-B7-5816-01 9 19050621 19050621 G T RRAGA 3'UTR 0.25 TCGA-B7-5816-01 9 20346569 20346569 C T MLLT3 Missense_Mutation p.V527M 0.13 deleterious(0) probably_damaging(0.994) TCGA-B7-5816-01 9 21216926 21216926 C A IFNA16 Missense_Mutation p.V127F 0.23 deleterious(0.01) possibly_damaging(0.543) TCGA-B7-5816-01 9 27157925 27157925 G A TEK Missense_Mutation p.R50H 0.11 tolerated(0.25) benign(0) TCGA-B7-5816-01 9 27950565 27950565 A G LINGO2 Silent p.S35S 0.08 TCGA-B7-5816-01 9 35396839 35396839 T C UNC13B Missense_Mutation p.W1064R 0.09 deleterious(0) possibly_damaging(0.883) TCGA-B7-5816-01 9 35800819 35800819 C T NPR2 Silent p.D444D 0.14 TCGA-B7-5816-01 9 36169823 36169823 T G CCIN Silent p.A108A 0.12 TCGA-B7-5816-01 9 5805191 5805191 A - ERMP1 Frame_Shift_Del p.Y584Tfs*49 0.08 TCGA-B7-5816-01 9 72347172 72347172 T C PTAR1 Silent p.R175R 0.11 TCGA-B7-5816-01 9 8465638 8465638 C T PTPRD Missense_Mutation p.R1181H 0.06 deleterious(0) benign(0.066) TCGA-B7-5816-01 9 8485893 8485893 G A PTPRD Missense_Mutation p.A975V 0.13 tolerated(0.24) benign(0.432) TCGA-B7-5816-01 9 8525005 8525005 G A PTPRD Missense_Mutation p.S200F 0.08 deleterious(0) probably_damaging(0.998) TCGA-B7-5816-01 9 88967932 88967932 A T ZCCHC6 Nonsense_Mutation p.Y61* 0.24 TCGA-B7-5816-01 9 88967954 88967954 T - ZCCHC6 Frame_Shift_Del p.K54Rfs*3 0.12 TCGA-B7-5816-01 9 91652990 91652990 G T SHC3 Missense_Mutation p.T525N 0.14 deleterious(0) possibly_damaging(0.742) TCGA-B7-5816-01 9 95022511 95022511 C T IARS Missense_Mutation p.G598D 0.07 deleterious(0) probably_damaging(1) TCGA-B7-5816-01 9 95796864 95796864 C T FGD3 Silent p.G609G 0.10 TCGA-B7-5816-01 9 95797867 95797867 C T FGD3 Missense_Mutation p.P725L 0.08 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-B7-5816-01 9 98239102 98239102 T C PTCH1 Missense_Mutation p.D514G 0.13 deleterious(0) possibly_damaging(0.897) TCGA-B7-5816-01 9 99404101 99404101 T C AAED1 Silent p.L207L 0.10 TCGA-B7-5816-01 X 100183185 100183185 T C XKRX Missense_Mutation p.I37V 0.12 tolerated(1) probably_damaging(0.97) TCGA-B7-5816-01 X 100403062 100403062 A - CENPI Frame_Shift_Del p.T671Lfs*10 0.10 TCGA-B7-5816-01 X 100532688 100532688 T C TAF7L Silent p.E285E 0.15 TCGA-B7-5816-01 X 10077957 10077957 C T WWC3 Missense_Mutation p.R291C 0.09 deleterious(0) possibly_damaging(0.888) TCGA-B7-5816-01 X 101624741 101624741 A G NXF2B Intron 0.13 TCGA-B7-5816-01 X 102004166 102004166 G C BHLHB9 Silent p.L81L 0.19 TCGA-B7-5816-01 X 10201604 10201604 G A CLCN4 Missense_Mutation p.E755K 0.10 tolerated(0.19) benign(0.007) TCGA-B7-5816-01 X 102931578 102931578 A C MORF4L2 Silent p.P126P 0.09 TCGA-B7-5816-01 X 105881026 105881027 - A CXorf57 Frame_Shift_Ins p.N484Kfs*7 0.13 TCGA-B7-5816-01 X 106070451 106070451 A G TBC1D8B Missense_Mutation p.I363V 0.11 tolerated(0.42) benign(0.001) TCGA-B7-5816-01 X 107977613 107977613 T C IRS4 Silent p.R654R 0.11 TCGA-B7-5816-01 X 108631747 108631747 G A GUCY2F Missense_Mutation p.P976L 0.21 deleterious(0.03) probably_damaging(0.999) TCGA-B7-5816-01 X 111914340 111914340 A G LHFPL1 Silent p.A93A 0.15 TCGA-B7-5816-01 X 112021703 112021703 C A AMOT 3'UTR 0.09 TCGA-B7-5816-01 X 115303748 115303748 A - AGTR2 Frame_Shift_Del p.K73Rfs*43 0.13 TCGA-B7-5816-01 X 11783634 11783634 G A MSL3 Silent p.T319T 0.12 TCGA-B7-5816-01 X 119388799 119388799 G A ZBTB33 Missense_Mutation p.R510Q 0.19 deleterious(0.01) benign(0.343) TCGA-B7-5816-01 X 120181966 120181966 G A GLUD2 Missense_Mutation p.R143H 0.10 deleterious(0.01) benign(0.132) TCGA-B7-5816-01 X 124029834 124029834 T G TENM1 Missense_Mutation p.E158D 0.20 tolerated_low_confidence(0.29) benign(0.297) TCGA-B7-5816-01 X 125685832 125685832 G T DCAF12L1 Missense_Mutation p.P254T 0.09 deleterious(0.01) possibly_damaging(0.839) TCGA-B7-5816-01 X 128879210 128879210 G A XPNPEP2 Missense_Mutation p.R89H 0.08 deleterious(0.02) probably_damaging(0.967) TCGA-B7-5816-01 X 129318542 129318542 C T RAB33A Missense_Mutation p.S181L 0.15 deleterious(0) probably_damaging(1) TCGA-B7-5816-01 X 129380906 129380906 T G ZNF280C Missense_Mutation p.E35D 0.11 tolerated(0.13) possibly_damaging(0.601) TCGA-B7-5816-01 X 130411114 130411114 G - IGSF1 Frame_Shift_Del p.H808Tfs*4 0.17 TCGA-B7-5816-01 X 133551319 133551319 C T PHF6 Nonsense_Mutation p.R319* 0.10 TCGA-B7-5816-01 X 134185786 134185786 G A FAM127B 3'UTR 0.12 TCGA-B7-5816-01 X 135290003 135290003 C A FHL1 Silent p.T128T 0.14 TCGA-B7-5816-01 X 137717647 137717647 G A FGF13 Missense_Mutation p.A201V 0.09 tolerated(0.23) possibly_damaging(0.654) TCGA-B7-5816-01 X 138724720 138724720 G A MCF2 Intron 0.08 TCGA-B7-5816-01 X 139866222 139866222 C T CDR1 Missense_Mutation p.D104N 0.23 tolerated(0.16) possibly_damaging(0.728) TCGA-B7-5816-01 X 140926121 140926121 G T MAGEC3 Missense_Mutation p.W7L 0.10 deleterious_low_confidence(0) benign(0.307) TCGA-B7-5816-01 X 140953268 140953268 G A MAGEC3 Silent p.K45K 0.07 TCGA-B7-5816-01 X 140996354 140996354 A G MAGEC1 Missense_Mutation p.E1055G 0.21 deleterious(0) unknown(0) TCGA-B7-5816-01 X 148037708 148037708 T C AFF2 Silent p.I711I 0.12 TCGA-B7-5816-01 X 14876021 14876021 C T FANCB Missense_Mutation p.R387H 0.09 tolerated(0.54) benign(0.006) TCGA-B7-5816-01 X 148797293 148797293 C T MAGEA11 Silent p.D74D 0.09 TCGA-B7-5816-01 X 151138713 151138713 C T GABRE Missense_Mutation p.R73H 0.10 tolerated(0.37) possibly_damaging(0.515) TCGA-B7-5816-01 X 152722663 152722663 C T HAUS7 Silent p.Q136Q 0.10 TCGA-B7-5816-01 X 152915490 152915490 C T DUSP9 Silent p.S295S 0.11 TCGA-B7-5816-01 X 153068923 153068923 C T PDZD4 Missense_Mutation p.R732Q 0.25 deleterious(0) probably_damaging(0.996) TCGA-B7-5816-01 X 153095762 153095762 C T PDZD4 5'UTR 0.07 TCGA-B7-5816-01 X 153537725 153537725 G A TKTL1 Missense_Mutation p.G94E 0.07 deleterious(0.01) probably_damaging(0.994) TCGA-B7-5816-01 X 153631309 153631310 - G DNASE1L1 Frame_Shift_Ins p.T250Hfs*15 0.29 TCGA-B7-5816-01 X 153664118 153664118 A G ATP6AP1 Missense_Mutation p.T432A 0.10 deleterious(0) possibly_damaging(0.765) TCGA-B7-5816-01 X 154279963 154279963 T C FUNDC2 Missense_Mutation p.Y127H 0.08 deleterious(0.01) possibly_damaging(0.521) TCGA-B7-5816-01 X 154563769 154563769 C T CLIC2 5'UTR 0.12 TCGA-B7-5816-01 X 16170760 16170760 T C GRPR Missense_Mutation p.Y383H 0.10 deleterious_low_confidence(0.05) benign(0.002) TCGA-B7-5816-01 X 216027 216027 G A PLCXD1 3'UTR 0.09 TCGA-B7-5816-01 X 2795350 2795350 T C GYG2 Splice_Site p.X448_splice 0.08 TCGA-B7-5816-01 X 30254158 30254158 C A MAGEB3 Silent p.S39S 0.15 TCGA-B7-5816-01 X 34961414 34961414 G A FAM47B Missense_Mutation p.E156K 0.10 tolerated(0.06) probably_damaging(0.996) TCGA-B7-5816-01 X 39911559 39911559 T C BCOR Missense_Mutation p.T1691A 0.15 deleterious(0) benign(0.05) TCGA-B7-5816-01 X 41203054 41203054 C T DDX3X Silent p.G248G 0.11 TCGA-B7-5816-01 X 41203302 41203302 G A DDX3X Missense_Mutation p.R262H 0.09 deleterious(0.05) benign(0.033) TCGA-B7-5816-01 X 41206134 41206134 C T DDX3X Silent p.N546N 0.15 TCGA-B7-5816-01 X 47086419 47086419 G T CDK16 Missense_Mutation p.G462C 0.09 deleterious(0) probably_damaging(1) TCGA-B7-5816-01 X 47101688 47101688 C T USP11 Missense_Mutation p.R506C 0.13 tolerated(0.09) probably_damaging(0.973) TCGA-B7-5816-01 X 47774787 47774787 C T ZNF81 Missense_Mutation p.R248C 0.10 tolerated(0.2) benign(0.001) TCGA-B7-5816-01 X 49137887 49137887 G A PPP1R3F Silent p.L341L 0.14 TCGA-B7-5816-01 X 51239074 51239075 - C NUDT11 Frame_Shift_Ins p.K75Efs*38 0.20 TCGA-B7-5816-01 X 51639696 51639696 G A MAGED1 Silent p.Q371Q 0.15 TCGA-B7-5816-01 X 53589856 53589856 G A HUWE1 Silent p.D2380D 0.17 TCGA-B7-5816-01 X 53631775 53631775 T G HUWE1 Missense_Mutation p.K839N 0.11 benign(0.059) TCGA-B7-5816-01 X 62570818 62570818 C T SPIN4 5'UTR 0.21 TCGA-B7-5816-01 X 66943810 66943810 A G AR 3'UTR 0.17 TCGA-B7-5816-01 X 67941416 67941416 G A STARD8 Missense_Mutation p.A763T 0.09 deleterious(0.02) possibly_damaging(0.647) TCGA-B7-5816-01 X 68060286 68060286 C T EFNB1 Missense_Mutation p.A277V 0.15 tolerated(0.15) benign(0.129) TCGA-B7-5816-01 X 69455639 69455639 C A AWAT1 Silent p.A50A 0.08 TCGA-B7-5816-01 X 69647041 69647041 A G GDPD2 Missense_Mutation p.T253A 0.14 tolerated(1) benign(0.004) TCGA-B7-5816-01 X 69719080 69719080 A G DLG3 Missense_Mutation p.D642G 0.11 deleterious(0) benign(0.122) TCGA-B7-5816-01 X 70349624 70349624 G A MED12 Silent p.R1262R 0.26 TCGA-B7-5816-01 X 70367985 70367985 T A NLGN3 Missense_Mutation p.I129N 0.11 tolerated(0.44) possibly_damaging(0.694) TCGA-B7-5816-01 X 70462271 70462271 G A ZMYM3 Missense_Mutation p.T1184M 0.14 tolerated(0.23) benign(0.058) TCGA-B7-5816-01 X 70469111 70469111 A - ZMYM3 Intron 0.09 TCGA-B7-5816-01 X 70522261 70522261 G A ITGB1BP2 Missense_Mutation p.G58S 0.10 deleterious(0) probably_damaging(1) TCGA-B7-5816-01 X 70618474 70618474 C T TAF1 Missense_Mutation p.R1245W 0.11 deleterious(0) probably_damaging(0.993) TCGA-B7-5816-01 X 70782825 70782825 T - OGT Frame_Shift_Del p.F704Lfs*12 0.11 TCGA-B7-5816-01 X 70823685 70823685 G A ACRC Silent p.S186S 0.11 TCGA-B7-5816-01 X 71856206 71856206 C T PHKA1 Missense_Mutation p.R497Q 0.07 deleterious(0) probably_damaging(0.992) TCGA-B7-5816-01 X 73042782 73042782 A C XIST RNA 0.15 TCGA-B7-5816-01 X 73524702 73524702 T C ZCCHC13 3'UTR 0.25 TCGA-B7-5816-01 X 74649028 74649028 T C ZDHHC15 Missense_Mutation p.N163S 0.27 deleterious(0) probably_damaging(0.984) TCGA-B7-5816-01 X 75004754 75004754 G - MAGEE2 Frame_Shift_Del p.Q45Sfs*27 0.09 TCGA-B7-5816-01 X 75649389 75649389 G A MAGEE1 Missense_Mutation p.V356I 0.09 deleterious_low_confidence(0.04) benign(0.012) TCGA-B7-5816-01 X 77112976 77112976 G A MAGT1 Missense_Mutation p.P169S 0.25 deleterious(0) probably_damaging(1) TCGA-B7-5816-01 X 77372817 77372817 C T PGK1 Silent p.A142A 0.09 TCGA-B7-5816-01 X 79277874 79277874 C T TBX22 Missense_Mutation p.R36W 0.18 deleterious(0.05) benign(0.224) TCGA-B7-5816-01 X 83129420 83129420 A G CYLC1 Silent p.S568S 0.17 TCGA-B7-5816-01 X 91133016 91133016 A G PCDH11X Missense_Mutation p.T593A 0.11 deleterious(0) probably_damaging(0.999) TCGA-B7-5816-01 X 91133119 91133119 C G PCDH11X Missense_Mutation p.P627R 0.18 deleterious(0.02) probably_damaging(0.995) TCGA-B7-5816-01 X 9912766 9912766 C T SHROOM2 Missense_Mutation p.T1466I 0.10 deleterious(0) benign(0.378) TCGA-B7-5816-01 X 99662949 99662949 G A PCDH19 Missense_Mutation p.P216L 0.14 deleterious(0) probably_damaging(0.984) TCGA-B7-5818-01 10 105923947 105923947 T G WDR96 Missense_Mutation p.I1051L 0.39 deleterious(0) benign(0.422) TCGA-B7-5818-01 10 105927437 105927437 T C WDR96 Missense_Mutation p.E917G 0.37 deleterious(0) probably_damaging(0.991) TCGA-B7-5818-01 10 106034968 106034968 C T GSTO2 Intron 0.26 TCGA-B7-5818-01 10 115947899 115947900 - A TDRD1 Frame_Shift_Ins p.L106Ifs*13 0.26 TCGA-B7-5818-01 10 118394392 118394392 C T PNLIPRP2 Silent p.F286F 0.41 TCGA-B7-5818-01 10 120917394 120917394 T G SFXN4 Missense_Mutation p.N154H 0.33 deleterious(0) probably_damaging(1) TCGA-B7-5818-01 10 121677497 121677497 T A SEC23IP Missense_Mutation p.L565H 0.35 deleterious(0) probably_damaging(1) TCGA-B7-5818-01 10 126678006 126678006 T C CTBP2 3'UTR 0.26 TCGA-B7-5818-01 10 134942949 134942949 G A GPR123 Silent p.L539L 0.21 TCGA-B7-5818-01 10 135440255 135440255 T G FRG2B 5'UTR 0.11 TCGA-B7-5818-01 10 14941679 14941679 C T SUV39H2 Missense_Mutation p.H331Y 0.35 deleterious(0) probably_damaging(0.998) TCGA-B7-5818-01 10 20466336 20466336 A G PLXDC2 Silent p.Q353Q 0.38 TCGA-B7-5818-01 10 23250949 23250949 G A ARMC3 Missense_Mutation p.R225Q 0.35 deleterious(0.05) benign(0.202) TCGA-B7-5818-01 10 33619745 33619745 A T NRP1 Missense_Mutation p.S47T 0.38 tolerated(0.16) benign(0.074) TCGA-B7-5818-01 10 43654206 43654206 C A CSGALNACT2 Silent p.L235L 0.03 TCGA-B7-5818-01 10 45878028 45878028 T C ALOX5 Missense_Mutation p.L83P 0.25 deleterious(0) probably_damaging(0.981) TCGA-B7-5818-01 10 54076318 54076318 A C DKK1 Missense_Mutation p.Q184H 0.28 deleterious(0.05) possibly_damaging(0.599) TCGA-B7-5818-01 10 55973714 55973714 T G PCDH15 Missense_Mutation p.K360N 0.22 deleterious(0.03) possibly_damaging(0.521) TCGA-B7-5818-01 10 65359005 65359005 A T REEP3 Missense_Mutation p.N127Y 0.33 deleterious(0) probably_damaging(0.986) TCGA-B7-5818-01 10 7326243 7326243 C T SFMBT2 Intron 0.36 TCGA-B7-5818-01 10 88277753 88277753 G A WAPAL Missense_Mutation p.S25F 0.41 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-B7-5818-01 10 92678659 92678659 A T ANKRD1 Missense_Mutation p.F139Y 0.42 tolerated(1) benign(0.01) TCGA-B7-5818-01 10 93221110 93221110 T G HECTD2 Missense_Mutation p.F169L 0.37 deleterious(0.05) probably_damaging(0.999) TCGA-B7-5818-01 10 93389733 93389733 G - PPP1R3C Frame_Shift_Del p.P302Qfs*35 0.27 TCGA-B7-5818-01 10 97779269 97779269 A G CC2D2B Intron 0.31 TCGA-B7-5818-01 10 97918544 97918544 G A ZNF518A RNA 0.35 TCGA-B7-5818-01 11 103104860 103104860 G T DYNC2H1 Missense_Mutation p.D3180Y 0.40 benign(0.205) TCGA-B7-5818-01 11 124626210 124626210 C T ESAM Missense_Mutation p.G167E 0.60 deleterious(0) probably_damaging(0.93) TCGA-B7-5818-01 11 17546043 17546043 G A USH1C Silent p.I238I 0.23 TCGA-B7-5818-01 11 18158908 18158908 C A MRGPRX3 Silent p.G53G 0.29 TCGA-B7-5818-01 11 20077454 20077454 G A NAV2 Silent p.K1617K 0.18 TCGA-B7-5818-01 11 2186587 2186587 C T TH Silent p.L434L 0.28 TCGA-B7-5818-01 11 22399195 22399195 G A SLC17A6 Missense_Mutation p.G553D 0.37 tolerated(0.27) benign(0.019) TCGA-B7-5818-01 11 30032683 30032683 A T KCNA4 Missense_Mutation p.F515I 0.28 deleterious(0) probably_damaging(0.943) TCGA-B7-5818-01 11 4673752 4673752 T G OR51E1 5'UTR 0.36 TCGA-B7-5818-01 11 48145248 48145248 G A PTPRJ Missense_Mutation p.A234T 0.34 tolerated(0.23) benign(0.126) TCGA-B7-5818-01 11 48346744 48346744 G A OR4C3 Silent p.V84V 0.13 TCGA-B7-5818-01 11 50003318 50003318 A G OR4C12 Silent p.S240S 0.37 TCGA-B7-5818-01 11 5529962 5529962 T G UBQLN3 Missense_Mutation p.N276T 0.36 deleterious(0) possibly_damaging(0.511) TCGA-B7-5818-01 11 55418466 55418466 T G OR4S2 Missense_Mutation p.F29L 0.36 deleterious(0) probably_damaging(0.993) TCGA-B7-5818-01 11 55890633 55890633 C T OR8H3 Missense_Mutation p.P262L 0.27 deleterious(0.02) benign(0.424) TCGA-B7-5818-01 11 56058388 56058388 G A OR8H1 Silent p.L51L 0.31 TCGA-B7-5818-01 11 56230020 56230020 C A OR5M9 Missense_Mutation p.M286I 0.30 deleterious(0.04) benign(0.003) TCGA-B7-5818-01 11 56380316 56380316 A C OR5M1 Missense_Mutation p.I221M 0.37 deleterious(0) probably_damaging(0.978) TCGA-B7-5818-01 11 56954987 56954987 C T LRRC55 3'UTR 0.56 TCGA-B7-5818-01 11 58893717 58893717 A G FAM111B Missense_Mutation p.E716G 0.30 deleterious(0.05) benign(0.079) TCGA-B7-5818-01 11 60274594 60274594 A G MS4A12 Silent p.K267K 0.40 TCGA-B7-5818-01 11 62327809 62327810 CT - EEF1G Frame_Shift_Del p.E325Vfs*5 0.36 TCGA-B7-5818-01 11 64606691 64606691 C T CDC42BPG Silent p.V230V 0.34 TCGA-B7-5818-01 11 74800405 74800405 G A OR2AT4 Silent p.F118F 0.38 TCGA-B7-5818-01 11 76239322 76239322 A C C11orf30 Missense_Mutation p.K669T 0.04 tolerated(0.19) probably_damaging(0.932) TCGA-B7-5818-01 11 76248947 76248947 C T C11orf30 Missense_Mutation p.S823L 0.27 tolerated_low_confidence(0.07) possibly_damaging(0.879) TCGA-B7-5818-01 11 83770425 83770425 C T DLG2 Silent p.L284L 0.33 TCGA-B7-5818-01 11 8715660 8715660 G A ST5 Missense_Mutation p.L1133F 0.05 deleterious(0) probably_damaging(0.951) TCGA-B7-5818-01 11 88301037 88301037 C T GRM5 Missense_Mutation p.R605H 0.26 tolerated(0.14) benign(0.04) TCGA-B7-5818-01 11 88338027 88338027 A G GRM5 Missense_Mutation p.L418P 0.35 deleterious(0) probably_damaging(1) TCGA-B7-5818-01 11 9165810 9165810 C T DENND5A Silent p.R1046R 0.24 TCGA-B7-5818-01 11 9182384 9182384 C T DENND5A Missense_Mutation p.G771D 0.34 deleterious(0) probably_damaging(0.991) TCGA-B7-5818-01 12 102038445 102038445 T C MYBPC1 Missense_Mutation p.F254S 0.34 deleterious(0) probably_damaging(0.999) TCGA-B7-5818-01 12 103352558 103352558 C G ASCL1 Missense_Mutation p.A179G 0.21 deleterious(0.04) probably_damaging(0.951) TCGA-B7-5818-01 12 105538520 105538520 A G KIAA1033 Missense_Mutation p.K735R 0.30 tolerated(0.19) benign(0.02) TCGA-B7-5818-01 12 113759072 113759073 - CCCC SLC8B1 Frame_Shift_Ins p.Y80Gfs*75 0.28 TCGA-B7-5818-01 12 12514147 12514147 T G LOH12CR1 Silent p.P22P 0.40 TCGA-B7-5818-01 12 129558617 129558617 G A TMEM132D Missense_Mutation p.P1035S 0.24 tolerated(0.55) benign(0.013) TCGA-B7-5818-01 12 130845758 130845758 A G PIWIL1 Missense_Mutation p.K567E 0.29 tolerated(0.25) probably_damaging(0.999) TCGA-B7-5818-01 12 132237891 132237891 C G SFSWAP Silent p.S435S 0.44 TCGA-B7-5818-01 12 13716421 13716421 G A GRIN2B Silent p.L1251L 0.33 TCGA-B7-5818-01 12 13768468 13768468 C A GRIN2B Missense_Mutation p.G487W 0.30 deleterious(0) probably_damaging(1) TCGA-B7-5818-01 12 21172216 21172216 T A SLCO1B7 Missense_Mutation p.F40L 0.36 deleterious(0.01) possibly_damaging(0.536) TCGA-B7-5818-01 12 40687444 40687444 G C LRRK2 Missense_Mutation p.L929F 0.32 tolerated_low_confidence(0.4) benign(0.006) TCGA-B7-5818-01 12 40687445 40687445 C T LRRK2 Nonsense_Mutation p.Q930* 0.32 TCGA-B7-5818-01 12 44915892 44915892 C T NELL2 Missense_Mutation p.C739Y 0.37 deleterious(0) probably_damaging(0.994) TCGA-B7-5818-01 12 5020811 5020811 C T KCNA1 Silent p.F89F 0.42 TCGA-B7-5818-01 12 52885418 52885418 C G KRT6A Missense_Mutation p.E215Q 0.30 deleterious(0) probably_damaging(0.993) TCGA-B7-5818-01 12 55641464 55641464 C A OR6C74 Silent p.T131T 0.31 TCGA-B7-5818-01 12 56867316 56867316 C T GLS2 Missense_Mutation p.M429I 0.32 deleterious(0) probably_damaging(0.945) TCGA-B7-5818-01 12 69747030 69747030 G A LYZ 3'UTR 0.40 TCGA-B7-5818-01 12 7556290 7556290 A G CD163L1 Missense_Mutation p.F417L 0.03 tolerated(0.19) benign(0.063) TCGA-B7-5818-01 12 75816696 75816696 G A GLIPR1L2 Silent p.T199T 0.32 TCGA-B7-5818-01 12 992681 992681 C T WNK1 Nonsense_Mutation p.Q1204* 0.32 TCGA-B7-5818-01 13 102379009 102379009 A C FGF14 Missense_Mutation p.V192G 0.22 deleterious(0) probably_damaging(0.992) TCGA-B7-5818-01 13 111933004 111933004 C T ARHGEF7 Missense_Mutation p.H590Y 0.30 tolerated(1) benign(0.002) TCGA-B7-5818-01 13 114786883 114786883 G A RASA3 Missense_Mutation p.A261V 0.24 deleterious(0) probably_damaging(0.994) TCGA-B7-5818-01 13 28862253 28862253 T A PAN3 Silent p.L839L 0.25 TCGA-B7-5818-01 13 38154095 38154095 C T POSTN Silent p.L521L 0.18 TCGA-B7-5818-01 13 46056546 46056546 A G COG3 Missense_Mutation p.S219G 0.27 tolerated(0.13) benign(0.058) TCGA-B7-5818-01 13 46287419 46287419 C T SPERT Nonsense_Mutation p.Q87* 0.17 TCGA-B7-5818-01 13 51939913 51939913 T C INTS6 Missense_Mutation p.Q880R 0.24 tolerated(0.56) benign(0.105) TCGA-B7-5818-01 13 58207479 58207479 G A PCDH17 Missense_Mutation p.A267T 0.16 deleterious(0) probably_damaging(1) TCGA-B7-5818-01 13 61985441 61985441 G A PCDH20 Missense_Mutation p.P931S 0.21 deleterious(0.01) probably_damaging(1) TCGA-B7-5818-01 13 70370969 70370969 G A KLHL1 Nonsense_Mutation p.R514* 0.51 TCGA-B7-5818-01 13 73293091 73293091 T G MZT1 Missense_Mutation p.K75T 0.21 deleterious(0.01) possibly_damaging(0.863) TCGA-B7-5818-01 13 77745688 77745688 A T MYCBP2 Silent p.S1873S 0.23 TCGA-B7-5818-01 13 96285518 96285518 G A DZIP1 Missense_Mutation p.R219C 0.21 deleterious(0) probably_damaging(0.939) TCGA-B7-5818-01 13 99948218 99948218 T A GPR183 Missense_Mutation p.K61I 0.25 deleterious(0) probably_damaging(0.933) TCGA-B7-5818-01 14 23559303 23559303 T G ACIN1 Silent p.S166S 0.26 TCGA-B7-5818-01 14 24838699 24838699 T G NFATC4 Intron 0.35 TCGA-B7-5818-01 14 32315787 32315787 T G NUBPL Silent p.L268L 0.41 TCGA-B7-5818-01 14 45414826 45414826 C T KLHL28 Silent p.Q102Q 0.37 TCGA-B7-5818-01 14 53525293 53525293 G A DDHD1 Missense_Mutation p.R632C 0.29 deleterious(0) probably_damaging(1) TCGA-B7-5818-01 14 58598379 58598379 A C C14orf37 Missense_Mutation p.V561G 0.30 tolerated(0.09) possibly_damaging(0.504) TCGA-B7-5818-01 14 60622819 60622819 A C DHRS7 Missense_Mutation p.I62S 0.27 deleterious(0) probably_damaging(0.999) TCGA-B7-5818-01 14 60976600 60976600 G T SIX6 Missense_Mutation p.A162S 0.40 deleterious(0.04) probably_damaging(0.994) TCGA-B7-5818-01 14 64375920 64375920 C T SYNE2 Silent p.I18I 0.26 TCGA-B7-5818-01 14 65208090 65208090 G A PLEKHG3 Missense_Mutation p.V563M 0.32 tolerated(0.08) benign(0.103) TCGA-B7-5818-01 14 68123178 68123178 T C VTI1B Silent p.E165E 0.35 TCGA-B7-5818-01 14 71215717 71215717 G A MAP3K9 Silent p.C385C 0.24 TCGA-B7-5818-01 14 77705999 77705999 G A TMEM63C Missense_Mutation p.G287E 0.26 deleterious(0.02) probably_damaging(0.997) TCGA-B7-5818-01 14 81972546 81972546 C T SEL1L Missense_Mutation p.C127Y 0.05 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-B7-5818-01 14 96798979 96798979 G A ATG2B Silent p.F407F 0.33 TCGA-B7-5818-01 15 101170069 101170069 C T ASB7 Silent p.D213D 0.39 TCGA-B7-5818-01 15 23052723 23052723 T A NIPA1 Missense_Mutation p.K117M 0.05 deleterious(0) benign(0.424) TCGA-B7-5818-01 15 25222974 25222974 C T SNRPN Missense_Mutation p.A157V 0.48 tolerated(0.12) probably_damaging(0.939) TCGA-B7-5818-01 15 25328811 25328811 C T SNORD116-17 RNA 0.04 TCGA-B7-5818-01 15 33359769 33359769 C T FMN1 Missense_Mutation p.G106E 0.32 deleterious_low_confidence(0.01) unknown(0) TCGA-B7-5818-01 15 34080453 34080453 C T RYR3 Silent p.P3208P 0.34 TCGA-B7-5818-01 15 41679602 41679602 A T NDUFAF1 3'UTR 0.41 TCGA-B7-5818-01 15 42035185 42035185 C T MGA Missense_Mutation p.P1676L 0.33 tolerated(0.1) benign(0.077) TCGA-B7-5818-01 15 49303937 49303937 A T SECISBP2L Missense_Mutation p.S619T 0.26 deleterious(0.04) probably_damaging(0.995) TCGA-B7-5818-01 15 55643036 55643036 T A PIGB Silent p.V421V 0.04 TCGA-B7-5818-01 15 56736697 56736697 T G MNS1 Missense_Mutation p.K211Q 0.27 tolerated(0.05) benign(0.14) TCGA-B7-5818-01 15 66845441 66845441 G A LCTL Missense_Mutation p.P360S 0.29 tolerated(0.12) benign(0.05) TCGA-B7-5818-01 15 72196349 72196349 A G MYO9A Missense_Mutation p.L933P 0.31 deleterious(0.01) probably_damaging(0.996) TCGA-B7-5818-01 15 81241151 81241151 C T KIAA1199 Silent p.F1324F 0.37 TCGA-B7-5818-01 15 85164607 85164607 A C ZSCAN2 Missense_Mutation p.D394A 0.37 deleterious(0.03) benign(0.207) TCGA-B7-5818-01 15 89169431 89169431 G A AEN 5'UTR 0.21 TCGA-B7-5818-01 15 90784820 90784820 G A GDPGP1 Missense_Mutation p.R227K 0.28 tolerated(0.17) benign(0.023) TCGA-B7-5818-01 15 90997755 90997755 T G IQGAP1 Missense_Mutation p.V528G 0.37 deleterious(0) probably_damaging(0.951) TCGA-B7-5818-01 16 1825336 1825336 G A EME2 Missense_Mutation p.R197Q 0.32 tolerated(1) benign(0.001) TCGA-B7-5818-01 16 18844380 18844380 C G SMG1 Missense_Mutation p.E2892Q 0.35 tolerated_low_confidence(0.11) benign(0.259) TCGA-B7-5818-01 16 1990794 1990794 T G MSRB1 Missense_Mutation p.K102Q 0.30 tolerated(0.07) benign(0.024) TCGA-B7-5818-01 16 20480970 20480970 T G ACSM2A Silent p.P175P 0.24 TCGA-B7-5818-01 16 20497948 20497948 C A ACSM2A Missense_Mutation p.A561D 0.36 tolerated(0.32) benign(0.002) TCGA-B7-5818-01 16 20498027 20498027 T A ACSM2A 3'UTR 0.31 TCGA-B7-5818-01 16 21078701 21078701 G A DNAH3 Missense_Mutation p.R1141W 0.27 deleterious(0) possibly_damaging(0.849) TCGA-B7-5818-01 16 22588014 22588014 C A RP11-368J21.3 RNA 0.13 TCGA-B7-5818-01 16 23546498 23546498 G A EARS2 Silent p.D223D 0.07 TCGA-B7-5818-01 16 50325788 50325788 A G ADCY7 Missense_Mutation p.S173G 0.27 tolerated(0.48) benign(0.002) TCGA-B7-5818-01 16 55900005 55900005 C T CES5A Missense_Mutation p.G221E 0.28 deleterious(0) probably_damaging(1) TCGA-B7-5818-01 16 56540055 56540055 T C BBS2 Missense_Mutation p.T232A 0.04 tolerated(0.64) benign(0.004) TCGA-B7-5818-01 16 67685834 67685834 C T RLTPR Silent p.L867L 0.04 TCGA-B7-5818-01 16 70867875 70867875 C T HYDIN Missense_Mutation p.E4532K 0.29 possibly_damaging(0.801) TCGA-B7-5818-01 16 784617 784617 C T NARFL Intron 0.28 TCGA-B7-5818-01 16 86544609 86544609 G A FOXF1 Missense_Mutation p.R145Q 0.52 deleterious(0.02) probably_damaging(0.996) TCGA-B7-5818-01 17 15134172 15134172 C T PMP22 3'UTR 0.52 TCGA-B7-5818-01 17 16068450 16068450 T C NCOR1 Missense_Mutation p.E154G 0.11 possibly_damaging(0.884) TCGA-B7-5818-01 17 1650311 1650311 A C SERPINF2 Splice_Site p.X123_splice 0.40 TCGA-B7-5818-01 17 26679998 26679998 C T POLDIP2 Missense_Mutation p.D187N 0.41 tolerated(0.06) possibly_damaging(0.848) TCGA-B7-5818-01 17 28405470 28405470 G C EFCAB5 Missense_Mutation p.S992T 0.27 deleterious(0) probably_damaging(0.999) TCGA-B7-5818-01 17 33520866 33520866 A G SLC35G3 Missense_Mutation p.L154P 0.22 deleterious(0) probably_damaging(1) TCGA-B7-5818-01 17 34324842 34324842 A C CCL15 Silent p.V101V 0.21 TCGA-B7-5818-01 17 42158248 42158248 G A HDAC5 Silent p.D871D 0.18 TCGA-B7-5818-01 17 44954149 44954149 A G WNT9B 3'UTR 0.26 TCGA-B7-5818-01 17 47784418 47784418 C T SLC35B1 Silent p.K39K 0.48 TCGA-B7-5818-01 17 4799503 4799503 C T MINK1 Missense_Mutation p.P1161S 0.60 tolerated(0.42) probably_damaging(0.999) TCGA-B7-5818-01 17 48243432 48243432 C T SGCA Missense_Mutation p.L11F 0.28 tolerated(0.13) benign(0.037) TCGA-B7-5818-01 17 56620386 56620386 C A C17orf47 Nonsense_Mutation p.G388* 0.48 TCGA-B7-5818-01 17 60814271 60814271 C A MARCH10 Missense_Mutation p.G320W 0.49 deleterious(0.03) possibly_damaging(0.784) TCGA-B7-5818-01 17 7578176 7578176 C T TP53 Splice_Site p.X224_splice 0.42 TCGA-B7-5818-01 17 76795750 76795750 T C USP36 Silent p.K1041K 0.48 TCGA-B7-5818-01 17 78346774 78346774 G C RNF213 Splice_Site p.X4251_splice 0.25 TCGA-B7-5818-01 17 80790384 80790384 C T ZNF750 5'UTR 0.24 TCGA-B7-5818-01 18 14478510 14478510 A C CXADRP3 RNA 0.47 TCGA-B7-5818-01 18 18564356 18564356 C T ROCK1 Silent p.L815L 0.31 TCGA-B7-5818-01 18 29044186 29044186 C T DSG3 Missense_Mutation p.T371I 0.04 tolerated(0.55) benign(0.015) TCGA-B7-5818-01 18 47109931 47109931 A T LIPG Missense_Mutation p.E388V 0.56 deleterious(0) possibly_damaging(0.901) TCGA-B7-5818-01 18 55269717 55269717 A C NARS Missense_Mutation p.V462G 0.44 deleterious(0) probably_damaging(0.986) TCGA-B7-5818-01 18 55319362 55319362 A C ATP8B1 Missense_Mutation p.S1102A 0.67 tolerated(0.25) benign(0.021) TCGA-B7-5818-01 18 63548089 63548089 G A CDH7 Missense_Mutation p.A773T 0.58 deleterious(0.01) probably_damaging(0.996) TCGA-B7-5818-01 18 66504478 66504478 C T CCDC102B Missense_Mutation p.L160F 0.51 tolerated(0.75) benign(0.06) TCGA-B7-5818-01 18 67871349 67871349 A G RTTN Missense_Mutation p.S124P 0.56 tolerated(0.1) possibly_damaging(0.809) TCGA-B7-5818-01 18 7026061 7026061 C A LAMA1 Missense_Mutation p.L773F 0.40 deleterious(0.01) possibly_damaging(0.836) TCGA-B7-5818-01 18 77227603 77227603 G A NFATC1 Intron 0.49 TCGA-B7-5818-01 18 77893739 77893739 C T ADNP2 Missense_Mutation p.S148F 0.18 tolerated(0.73) possibly_damaging(0.514) TCGA-B7-5818-01 18 8076538 8076538 A G PTPRM Silent p.T509T 0.29 TCGA-B7-5818-01 19 10250741 10250741 G A DNMT1 Silent p.L1263L 0.26 TCGA-B7-5818-01 19 10404989 10404989 C T ICAM5 Missense_Mutation p.A662V 0.30 tolerated(1) benign(0.006) TCGA-B7-5818-01 19 11977395 11977395 C A ZNF439 Missense_Mutation p.N73K 0.31 tolerated(0.07) benign(0.341) TCGA-B7-5818-01 19 16918624 16918624 G A NWD1 Missense_Mutation p.V1322I 0.34 tolerated(0.22) benign(0.1) TCGA-B7-5818-01 19 16926140 16926140 A T NWD1 3'UTR 0.40 TCGA-B7-5818-01 19 17036025 17036025 G A CPAMD8 Silent p.T1223T 0.40 TCGA-B7-5818-01 19 18652561 18652561 G A FKBP8 Nonsense_Mutation p.R74* 0.48 TCGA-B7-5818-01 19 20229448 20229448 T G ZNF90 Missense_Mutation p.I362S 0.24 deleterious(0.02) possibly_damaging(0.537) TCGA-B7-5818-01 19 22939044 22939044 G T ZNF99 3'Flank 0.58 TCGA-B7-5818-01 19 39819228 39819228 C T GMFG Intron 0.41 TCGA-B7-5818-01 19 40319150 40319150 G A DYRK1B Silent p.Y198Y 0.23 TCGA-B7-5818-01 19 40320856 40320856 T G DYRK1B Intron 0.33 TCGA-B7-5818-01 19 41066375 41066375 C T SPTBN4 Intron 0.26 TCGA-B7-5818-01 19 41889824 41889824 C A TMEM91 3'UTR 0.41 TCGA-B7-5818-01 19 43242962 43242962 T G PSG3 Missense_Mutation p.E115A 0.02 tolerated(0.13) benign(0.217) TCGA-B7-5818-01 19 47918036 47918036 C T MEIS3 Missense_Mutation p.D179N 0.26 deleterious(0.01) benign(0.144) TCGA-B7-5818-01 19 52091509 52091509 C T ZNF175 Missense_Mutation p.P642L 0.37 deleterious(0.01) benign(0.01) TCGA-B7-5818-01 19 52918758 52918758 G A ZNF528 Missense_Mutation p.C218Y 0.36 deleterious(0.02) probably_damaging(1) TCGA-B7-5818-01 19 53472634 53472634 G A ZNF702P RNA 0.24 TCGA-B7-5818-01 19 56369641 56369641 A G NLRP4 Silent p.S294S 0.35 TCGA-B7-5818-01 19 56538970 56538970 G A NLRP5 Silent p.A457A 0.33 TCGA-B7-5818-01 19 57642751 57642751 C T USP29 Missense_Mutation p.T903I 0.32 deleterious(0.01) benign(0.224) TCGA-B7-5818-01 19 6387561 6387561 G A GTF2F1 Silent p.G112G 0.33 TCGA-B7-5818-01 19 9082954 9082954 T A MUC16 Missense_Mutation p.Q2954L 0.34 unknown(0) TCGA-B7-5818-01 1 103471441 103471441 G A COL11A1 Nonsense_Mutation p.R600* 0.27 TCGA-B7-5818-01 1 109395176 109395176 T G AKNAD1 Missense_Mutation p.K37N 0.28 tolerated(0.22) benign(0.065) TCGA-B7-5818-01 1 110211094 110211094 C T GSTM2 Silent p.Y28Y 0.34 TCGA-B7-5818-01 1 112304023 112304023 T G DDX20 Intron 0.25 TCGA-B7-5818-01 1 115268968 115268968 G A CSDE1 Nonsense_Mutation p.Q548* 0.37 TCGA-B7-5818-01 1 120436507 120436507 A T ADAM30 3'UTR 0.33 TCGA-B7-5818-01 1 120935936 120935936 C A FCGR1B 5'UTR 0.32 TCGA-B7-5818-01 1 12336395 12336395 T G VPS13D Missense_Mutation p.I917S 0.36 benign(0.017) TCGA-B7-5818-01 1 12908154 12908154 A G HNRNPCL1 5'UTR 0.11 TCGA-B7-5818-01 1 144879446 144879446 T G PDE4DIP Missense_Mutation p.Q1335P 0.13 tolerated(0.29) benign(0.005) TCGA-B7-5818-01 1 145562407 145562407 A G ANKRD35 Missense_Mutation p.S699G 0.39 deleterious(0.03) possibly_damaging(0.713) TCGA-B7-5818-01 1 146684985 146684985 C T FMO5 Nonsense_Mutation p.W126* 0.30 TCGA-B7-5818-01 1 150686581 150686581 C T HORMAD1 Missense_Mutation p.D87N 0.18 deleterious(0) probably_damaging(0.96) TCGA-B7-5818-01 1 151298822 151298822 T G PI4KB 5'UTR 0.21 TCGA-B7-5818-01 1 152085274 152085274 T G TCHH Missense_Mutation p.K140T 0.34 unknown(0) TCGA-B7-5818-01 1 152538391 152538391 G A LCE3E 3'UTR 0.34 TCGA-B7-5818-01 1 155297950 155297950 T C RUSC1 Silent p.S808S 0.34 TCGA-B7-5818-01 1 157545319 157545319 T C FCRL4 Missense_Mutation p.S515G 0.33 deleterious_low_confidence(0.03) benign(0.026) TCGA-B7-5818-01 1 159021773 159021773 G A IFI16 Missense_Mutation p.R601Q 0.34 tolerated(0.78) benign(0.01) TCGA-B7-5818-01 1 160793331 160793331 C T LY9 Silent p.A525A 0.39 TCGA-B7-5818-01 1 165513858 165513858 A C LRRC52 Missense_Mutation p.S109R 0.34 deleterious(0) probably_damaging(1) TCGA-B7-5818-01 1 167404663 167404663 C T CD247 Silent p.R103R 0.27 TCGA-B7-5818-01 1 171168622 171168622 G T FMO2 Missense_Mutation p.A208S 0.23 tolerated(0.29) benign(0.033) TCGA-B7-5818-01 1 171553241 171553241 A G PRRC2C Missense_Mutation p.Q2517R 0.23 probably_damaging(0.979) TCGA-B7-5818-01 1 182544700 182544700 T - RNASEL Frame_Shift_Del p.I685Lfs*16 0.25 TCGA-B7-5818-01 1 185932925 185932925 T G HMCN1 Missense_Mutation p.L666V 0.23 probably_damaging(0.987) TCGA-B7-5818-01 1 196964892 196964892 A C CFHR5 Missense_Mutation p.E218A 0.31 tolerated(0.07) benign(0.192) TCGA-B7-5818-01 1 200539132 200539132 T A KIF14 Missense_Mutation p.S1190C 0.35 deleterious(0) probably_damaging(0.99) TCGA-B7-5818-01 1 202573584 202573584 T G SYT2 Missense_Mutation p.Q115P 0.27 tolerated(0.42) benign(0.007) TCGA-B7-5818-01 1 203097967 203097967 G A ADORA1 5'UTR 0.60 TCGA-B7-5818-01 1 209778918 209778918 C T CAMK1G Missense_Mutation p.R112W 0.32 deleterious(0) probably_damaging(0.999) TCGA-B7-5818-01 1 21031296 21031296 C T KIF17 Missense_Mutation p.R256Q 0.75 deleterious(0) probably_damaging(0.979) TCGA-B7-5818-01 1 21177780 21177780 T G EIF4G3 Missense_Mutation p.E1198A 0.32 deleterious(0.03) benign(0.16) TCGA-B7-5818-01 1 214819864 214819864 G T CENPF Missense_Mutation p.Q2317H 0.64 benign(0.015) TCGA-B7-5818-01 1 216595483 216595483 A C USH2A Missense_Mutation p.F66V 0.30 benign(0.341) TCGA-B7-5818-01 1 220156722 220156722 T A EPRS Missense_Mutation p.M1037L 0.73 tolerated(0.16) benign(0.004) TCGA-B7-5818-01 1 228563836 228563836 C T OBSCN Silent p.S8595S 0.29 TCGA-B7-5818-01 1 235894451 235894451 T C LYST Missense_Mutation p.Y2943C 0.37 tolerated(0.08) benign(0.206) TCGA-B7-5818-01 1 243349125 243349125 T C CEP170 Missense_Mutation p.N508D 0.33 deleterious(0.02) possibly_damaging(0.571) TCGA-B7-5818-01 1 24795705 24795705 C T NIPAL3 3'UTR 0.14 TCGA-B7-5818-01 1 248487439 248487439 C T OR2M7 Missense_Mutation p.M144I 0.34 tolerated(0.24) benign(0.018) TCGA-B7-5818-01 1 27105930 27105931 - G ARID1A Frame_Shift_Ins p.D1850Gfs*4 0.49 TCGA-B7-5818-01 1 38465047 38465047 G A FHL3 Missense_Mutation p.S13F 0.72 deleterious(0) probably_damaging(0.999) TCGA-B7-5818-01 1 64608163 64608163 A G ROR1 Missense_Mutation p.Q335R 0.38 tolerated(0.07) probably_damaging(0.987) TCGA-B7-5818-01 1 6646027 6646027 T C ZBTB48 Silent p.C327C 0.25 TCGA-B7-5818-01 1 68512316 68512316 A T DIRAS3 Missense_Mutation p.L222Q 0.32 deleterious(0) possibly_damaging(0.671) TCGA-B7-5818-01 1 76877904 76877904 A - ST6GALNAC3 Frame_Shift_Del p.Y142Ffs*20 0.21 TCGA-B7-5818-01 1 86252065 86252065 G A COL24A1 Missense_Mutation p.P1344L 0.26 deleterious(0.02) benign(0.424) TCGA-B7-5818-01 1 90179007 90179007 G T LRRC8C Missense_Mutation p.C293F 0.66 deleterious(0) probably_damaging(0.994) TCGA-B7-5818-01 20 19565697 19565698 - AGGTAGGTG SLC24A3 Nonsense_Mutation 0.18 TCGA-B7-5818-01 20 23350829 23350829 T C GZF1 Silent p.Y629Y 0.34 TCGA-B7-5818-01 20 33329501 33329501 A T NCOA6 Missense_Mutation p.V1520D 0.33 benign(0.045) TCGA-B7-5818-01 20 36758527 36758527 C A TGM2 3'UTR 0.62 TCGA-B7-5818-01 20 37581154 37581154 C T FAM83D Silent p.S613S 0.31 TCGA-B7-5818-01 20 42602048 42602048 C G TOX2 Missense_Mutation p.N47K 0.19 deleterious(0.01) probably_damaging(0.986) TCGA-B7-5818-01 20 44839198 44839198 C T CDH22 Missense_Mutation p.R345H 0.18 tolerated(0.12) benign(0.006) TCGA-B7-5818-01 21 10944678 10944678 T G TPTE Missense_Mutation p.N186H 0.12 tolerated(0.38) possibly_damaging(0.852) TCGA-B7-5818-01 21 31023457 31023457 A G GRIK1 Missense_Mutation p.L312P 0.49 deleterious(0.03) benign(0.059) TCGA-B7-5818-01 21 34903839 34903839 C T GART Missense_Mutation p.E185K 0.50 tolerated(0.07) benign(0.114) TCGA-B7-5818-01 21 37741808 37741808 A C MORC3 Missense_Mutation p.K714N 0.05 deleterious(0.04) benign(0.045) TCGA-B7-5818-01 21 45713694 45713694 G A AIRE Missense_Mutation p.C434Y 0.62 deleterious(0) probably_damaging(0.927) TCGA-B7-5818-01 21 45833885 45833885 C T TRPM2 Missense_Mutation p.T1025M 0.59 deleterious(0) probably_damaging(1) TCGA-B7-5818-01 22 17978449 17978449 A G CECR2 Missense_Mutation p.D97G 0.21 deleterious(0.01) possibly_damaging(0.801) TCGA-B7-5818-01 22 20097545 20097545 C T DGCR8 Intron 0.30 TCGA-B7-5818-01 22 22676907 22676907 C T IGLV1-51 Missense_Mutation p.T15I 0.58 deleterious(0.01) possibly_damaging(0.773) TCGA-B7-5818-01 22 24472130 24472130 C T CABIN1 Missense_Mutation p.T882M 0.21 tolerated(0.07) benign(0.003) TCGA-B7-5818-01 22 45828195 45828195 C T RIBC2 Nonsense_Mutation p.Q363* 0.45 TCGA-B7-5818-01 2 101638823 101638823 A G TBC1D8 Missense_Mutation p.I879T 0.32 tolerated(0.84) benign(0.003) TCGA-B7-5818-01 2 102486168 102486168 G A MAP4K4 Missense_Mutation p.E769K 0.56 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-B7-5818-01 2 11338685 11338688 TTTC - ROCK2 Frame_Shift_Del p.E1010* 0.34 TCGA-B7-5818-01 2 118575280 118575280 A C DDX18 Missense_Mutation p.K116Q 0.33 tolerated(0.32) benign(0.397) TCGA-B7-5818-01 2 120194860 120194860 C T TMEM37 Silent p.S139S 0.34 TCGA-B7-5818-01 2 128392752 128392752 T G MYO7B Missense_Mutation p.I1898R 0.17 deleterious(0.02) benign(0.229) TCGA-B7-5818-01 2 153475530 153475530 A C FMNL2 Silent p.P495P 0.36 TCGA-B7-5818-01 2 158991450 158991450 A C UPP2 3'UTR 0.31 TCGA-B7-5818-01 2 159518074 159518074 G C PKP4 Intron 0.28 TCGA-B7-5818-01 2 160086957 160086957 A C TANC1 Missense_Mutation p.K1674Q 0.05 tolerated_low_confidence(0.54) benign(0.323) TCGA-B7-5818-01 2 170081876 170081876 A G LRP2 Silent p.L1828L 0.40 TCGA-B7-5818-01 2 170488410 170488410 G A PPIG Missense_Mutation p.R299K 0.29 tolerated(0.67) unknown(0) TCGA-B7-5818-01 2 172398188 172398188 T G CYBRD1 Missense_Mutation p.L96R 0.39 deleterious(0) probably_damaging(0.992) TCGA-B7-5818-01 2 179247154 179247154 A C OSBPL6 Missense_Mutation p.D539A 0.32 deleterious(0) probably_damaging(0.929) TCGA-B7-5818-01 2 179478624 179478624 G A TTN Silent p.I16462I 0.03 TCGA-B7-5818-01 2 179665321 179665321 A G TTN Silent p.T128T 0.29 TCGA-B7-5818-01 2 187625939 187625939 T G FAM171B Missense_Mutation p.F371C 0.31 deleterious(0) probably_damaging(0.959) TCGA-B7-5818-01 2 187698698 187698698 A C ZSWIM2 Missense_Mutation p.L268R 0.23 tolerated(0.35) benign(0.363) TCGA-B7-5818-01 2 190532199 190532199 C T ASNSD1 Silent p.H447H 0.32 TCGA-B7-5818-01 2 210908810 210908810 T - KANSL1L Frame_Shift_Del p.T592Qfs*4 0.30 TCGA-B7-5818-01 2 217124018 217124018 C T MARCH4 3'UTR 0.33 TCGA-B7-5818-01 2 219890820 219890820 G A CCDC108 Missense_Mutation p.T758M 0.32 deleterious(0.01) possibly_damaging(0.846) TCGA-B7-5818-01 2 220246268 220246268 T C DNPEP Missense_Mutation p.K379R 0.31 tolerated(0.08) possibly_damaging(0.519) TCGA-B7-5818-01 2 224463773 224463773 T C SCG2 Silent p.P76P 0.33 TCGA-B7-5818-01 2 225639814 225639814 C T DOCK10 Missense_Mutation p.D1941N 0.28 deleterious(0) possibly_damaging(0.881) TCGA-B7-5818-01 2 228680227 228680227 T G CCL20 Missense_Mutation p.F45C 0.39 tolerated(0.18) possibly_damaging(0.852) TCGA-B7-5818-01 2 228884214 228884214 A G SPHKAP Silent p.V452V 0.32 TCGA-B7-5818-01 2 231109759 231109759 G A SP140 Missense_Mutation p.A210T 0.29 tolerated(0.45) benign(0.079) TCGA-B7-5818-01 2 231327182 231327182 G A SP100 Missense_Mutation p.D336N 0.39 tolerated(0.11) probably_damaging(0.932) TCGA-B7-5818-01 2 241631397 241631397 C T AQP12A Missense_Mutation p.R23W 0.39 tolerated(0.25) benign(0.051) TCGA-B7-5818-01 2 242065717 242065717 G A PASK Silent p.V871V 0.33 TCGA-B7-5818-01 2 27522174 27522174 A G TRIM54 Missense_Mutation p.N135D 0.32 deleterious(0.02) benign(0.373) TCGA-B7-5818-01 2 27534778 27534778 G A MPV17 Silent p.P150P 0.34 TCGA-B7-5818-01 2 29039042 29039042 C T SPDYA Silent p.N54N 0.38 TCGA-B7-5818-01 2 63834000 63834000 A C MDH1 Missense_Mutation p.K313T 0.33 deleterious(0) possibly_damaging(0.494) TCGA-B7-5818-01 2 65541156 65541156 C T SPRED2 Missense_Mutation p.D246N 0.24 deleterious(0.04) benign(0.014) TCGA-B7-5818-01 2 84806741 84806741 G C DNAH6 Missense_Mutation p.V723L 0.36 tolerated(0.36) benign(0.001) TCGA-B7-5818-01 2 89100675 89100675 A G ANKRD36BP2 RNA 0.26 TCGA-B7-5818-01 2 9508631 9508631 C T ASAP2 Silent p.P513P 0.25 TCGA-B7-5818-01 2 96690197 96690197 G T GPAT2 Silent p.V549V 0.27 TCGA-B7-5818-01 3 101284689 101284689 A G TRMT10C Missense_Mutation p.Q355R 0.17 deleterious(0) probably_damaging(1) TCGA-B7-5818-01 3 108100257 108100257 A C MYH15 3'UTR 0.25 TCGA-B7-5818-01 3 108179190 108179190 C T MYH15 Missense_Mutation p.R650Q 0.56 tolerated(0.16) benign(0.013) TCGA-B7-5818-01 3 111603306 111603306 T A PHLDB2 Missense_Mutation p.F128I 0.19 deleterious_low_confidence(0.04) benign(0.059) TCGA-B7-5818-01 3 113753930 113753930 T G KIAA1407 Missense_Mutation p.K220N 0.21 deleterious(0) possibly_damaging(0.735) TCGA-B7-5818-01 3 121228492 121228492 T C POLQ Silent p.P625P 0.21 TCGA-B7-5818-01 3 121981176 121981176 C T CASR Nonsense_Mutation p.Q432* 0.16 TCGA-B7-5818-01 3 122133940 122133940 C T WDR5B Missense_Mutation p.D146N 0.19 deleterious(0) probably_damaging(1) TCGA-B7-5818-01 3 122437724 122437724 T C PARP14 Missense_Mutation p.Y1576H 0.25 deleterious(0) probably_damaging(0.992) TCGA-B7-5818-01 3 124132335 124132335 G A KALRN Missense_Mutation p.A787T 0.64 tolerated(0.33) benign(0.036) TCGA-B7-5818-01 3 124952156 124952156 T C ZNF148 Missense_Mutation p.K472E 0.19 deleterious(0) probably_damaging(0.985) TCGA-B7-5818-01 3 130340692 130340692 G T COL6A6 Missense_Mutation p.G1615W 0.15 deleterious(0.01) probably_damaging(1) TCGA-B7-5818-01 3 130380597 130380597 G A COL6A6 Missense_Mutation p.D1983N 0.16 tolerated(0.5) probably_damaging(0.94) TCGA-B7-5818-01 3 130881249 130881249 T C NEK11 Intron 0.24 TCGA-B7-5818-01 3 136664858 136664858 T G NCK1 Missense_Mutation p.I220M 0.02 deleterious(0.03) possibly_damaging(0.878) TCGA-B7-5818-01 3 138763216 138763216 C T PRR23C Missense_Mutation p.A83T 0.17 deleterious(0.04) benign(0.22) TCGA-B7-5818-01 3 142166709 142166709 C T XRN1 Intron 0.18 TCGA-B7-5818-01 3 142606588 142606588 C T PCOLCE2 Missense_Mutation p.G39R 0.23 deleterious(0.03) probably_damaging(0.958) TCGA-B7-5818-01 3 148459964 148459964 G A AGTR1 3'UTR 0.22 TCGA-B7-5818-01 3 150460290 150460290 A C SIAH2 Missense_Mutation p.F205V 0.23 deleterious(0) probably_damaging(1) TCGA-B7-5818-01 3 15116106 15116106 T G ZFYVE20 Missense_Mutation p.E513A 0.35 deleterious(0.05) possibly_damaging(0.543) TCGA-B7-5818-01 3 152554055 152554055 C T P2RY1 Missense_Mutation p.R162W 0.18 tolerated(1) probably_damaging(0.998) TCGA-B7-5818-01 3 153203896 153203896 T C C3orf79 Splice_Site p.X75_splice 0.28 TCGA-B7-5818-01 3 155481395 155481395 C T C3orf33 Missense_Mutation p.E223K 0.17 tolerated_low_confidence(0.17) benign(0.014) TCGA-B7-5818-01 3 157815900 157815900 T C SHOX2 Silent p.A328A 0.18 TCGA-B7-5818-01 3 160804463 160804463 A G B3GALNT1 Missense_Mutation p.L27P 0.24 deleterious(0.02) possibly_damaging(0.902) TCGA-B7-5818-01 3 167086288 167086288 T C ZBBX Missense_Mutation p.E48G 0.14 deleterious(0.03) benign(0.176) TCGA-B7-5818-01 3 167747646 167747646 T C GOLIM4 Missense_Mutation p.Q452R 0.22 tolerated(0.11) probably_damaging(0.979) TCGA-B7-5818-01 3 169482810 169482810 A T ACTRT3 3'Flank 0.56 TCGA-B7-5818-01 3 169513914 169513914 A C LRRC34 Intron 0.16 TCGA-B7-5818-01 3 170784001 170784001 T G TNIK Missense_Mutation p.K1325T 0.19 deleterious(0) probably_damaging(0.997) TCGA-B7-5818-01 3 172538075 172538075 T C ECT2 3'UTR 0.11 TCGA-B7-5818-01 3 178742787 178742787 A C ZMAT3 3'UTR 0.21 TCGA-B7-5818-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.41 deleterious(0.04) probably_damaging(0.96) TCGA-B7-5818-01 3 178984562 178984562 A C KCNMB3 5'UTR 0.28 TCGA-B7-5818-01 3 179051248 179051248 C A ZNF639 Missense_Mutation p.Q166K 0.14 tolerated(0.13) benign(0.022) TCGA-B7-5818-01 3 180328303 180328303 A C TTC14 Missense_Mutation p.K762N 0.20 deleterious_low_confidence(0.01) unknown(0) TCGA-B7-5818-01 3 184075422 184075422 G A CLCN2 Missense_Mutation p.A253V 0.63 deleterious(0.04) possibly_damaging(0.615) TCGA-B7-5818-01 3 184295588 184295588 A G EPHB3 Missense_Mutation p.E541G 0.17 deleterious(0.01) benign(0.001) TCGA-B7-5818-01 3 186338625 186338625 G A AHSG Missense_Mutation p.R337Q 0.21 tolerated(0.59) benign(0.002) TCGA-B7-5818-01 3 195501076 195501076 G A MUC4 Silent p.F4348F 0.21 TCGA-B7-5818-01 3 195517394 195517394 A C MUC4 Missense_Mutation p.L353V 0.19 unknown(0) TCGA-B7-5818-01 3 196281389 196281389 A C WDR53 Missense_Mutation p.L257R 0.18 deleterious(0) probably_damaging(0.99) TCGA-B7-5818-01 3 36888720 36888720 A G TRANK1 Missense_Mutation p.S1625P 0.28 tolerated(0.91) benign(0.006) TCGA-B7-5818-01 3 36898084 36898084 G A TRANK1 Silent p.D999D 0.24 TCGA-B7-5818-01 3 37095328 37095328 G A LRRFIP2 3'UTR 0.37 TCGA-B7-5818-01 3 42727322 42727322 A G KLHL40 Missense_Mutation p.E71G 0.36 deleterious(0.01) probably_damaging(0.996) TCGA-B7-5818-01 3 43381977 43381977 A G SNRK Silent p.R310R 0.31 TCGA-B7-5818-01 3 47453892 47453892 A T PTPN23 Missense_Mutation p.K1433M 0.29 probably_damaging(0.999) TCGA-B7-5818-01 3 49570131 49570131 A G DAG1 Silent p.S729S 0.27 TCGA-B7-5818-01 3 51752122 51752122 G A GRM2 Silent p.S871S 0.36 TCGA-B7-5818-01 3 52255383 52255383 C A TLR9 Silent p.L1137L 0.27 TCGA-B7-5818-01 3 53852074 53852074 T C CHDH Silent p.K505K 0.24 TCGA-B7-5818-01 3 57312815 57312815 T G ASB14 Missense_Mutation p.N341H 0.44 deleterious(0) probably_damaging(0.999) TCGA-B7-5818-01 3 57898412 57898412 A C SLMAP Missense_Mutation p.E634D 0.42 tolerated_low_confidence(0.06) benign(0.431) TCGA-B7-5818-01 3 58512199 58512199 A C ACOX2 Missense_Mutation p.V447G 0.38 deleterious(0) benign(0.197) TCGA-B7-5818-01 3 77147286 77147286 C A ROBO2 Silent p.T77T 0.35 TCGA-B7-5818-01 3 86114755 86114755 A G CADM2 Missense_Mutation p.D357G 0.39 deleterious(0.01) benign(0.367) TCGA-B7-5818-01 3 93624914 93624914 A G PROS1 Silent p.S140S 0.22 TCGA-B7-5818-01 3 93780447 93780447 G A DHFRL1 5'UTR 0.14 TCGA-B7-5818-01 3 9877073 9877073 A T TTLL3 Missense_Mutation p.K883M 0.30 tolerated_low_confidence(0.08) benign(0.017) TCGA-B7-5818-01 3 99897207 99897207 A G CMSS1 Missense_Mutation p.E272G 0.13 tolerated(0.6) benign(0.001) TCGA-B7-5818-01 4 103988638 103988638 A C SLC9B2 Missense_Mutation p.S24A 0.34 tolerated(0.25) benign(0.003) TCGA-B7-5818-01 4 115767007 115767007 G A NDST4 Missense_Mutation p.P696L 0.37 deleterious(0) probably_damaging(0.999) TCGA-B7-5818-01 4 122754405 122754405 G A BBS7 Nonsense_Mutation p.Q553* 0.31 TCGA-B7-5818-01 4 128694699 128694699 A C SLC25A31 Missense_Mutation p.E306D 0.35 tolerated(0.11) benign(0.005) TCGA-B7-5818-01 4 156634545 156634545 A C GUCY1A3 Missense_Mutation p.E461A 0.23 tolerated(0.46) possibly_damaging(0.542) TCGA-B7-5818-01 4 187629762 187629762 C T FAT1 Missense_Mutation p.G407E 0.26 benign(0.14) TCGA-B7-5818-01 4 2240726 2240726 G A HAUS3 Silent p.T318T 0.28 TCGA-B7-5818-01 4 23815666 23815666 C T PPARGC1A Silent p.K480K 0.25 TCGA-B7-5818-01 4 40440536 40440537 - T RBM47 Frame_Shift_Ins p.R126Afs*5 0.33 TCGA-B7-5818-01 4 435590 435590 C T ZNF721 Missense_Mutation p.G889E 0.31 deleterious(0.02) probably_damaging(0.975) TCGA-B7-5818-01 4 533039 533039 T G PIGG Missense_Mutation p.L945V 0.40 deleterious(0) probably_damaging(0.998) TCGA-B7-5818-01 4 56310904 56310904 A C CLOCK Missense_Mutation p.L530V 0.32 deleterious(0) probably_damaging(0.997) TCGA-B7-5818-01 4 56319950 56319950 G A CLOCK Silent p.L342L 0.43 TCGA-B7-5818-01 4 66467875 66467875 A G EPHA5 Missense_Mutation p.F132L 0.34 deleterious(0) probably_damaging(0.977) TCGA-B7-5818-01 4 68919601 68919602 - GTG TMPRSS11F 3'UTR 0.41 TCGA-B7-5818-01 4 71640928 71640928 G A RUFY3 Missense_Mutation p.E268K 0.26 deleterious(0) possibly_damaging(0.547) TCGA-B7-5818-01 4 89588548 89588548 C T HERC3 Missense_Mutation p.T451M 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-B7-5818-01 4 9909888 9909888 C T SLC2A9 Missense_Mutation p.G362S 0.24 deleterious(0.04) possibly_damaging(0.728) TCGA-B7-5818-01 5 101593661 101593661 G A SLCO4C1 Missense_Mutation p.A420V 0.32 deleterious(0) probably_damaging(0.99) TCGA-B7-5818-01 5 112917175 112917175 G A YTHDC2 Missense_Mutation p.R1139K 0.34 tolerated(0.23) benign(0.016) TCGA-B7-5818-01 5 11732288 11732288 G A CTNND2 Missense_Mutation p.T45I 0.45 tolerated(0.1) benign(0.317) TCGA-B7-5818-01 5 134099702 134099707 TAGAGA - DDX46 In_Frame_Del p.D46_R47del 0.30 TCGA-B7-5818-01 5 13864542 13864542 C T DNAH5 Missense_Mutation p.M1520I 0.29 benign(0) TCGA-B7-5818-01 5 140167731 140167731 G A PCDHA1 Missense_Mutation p.R619H 0.37 tolerated_low_confidence(0.09) benign(0.139) TCGA-B7-5818-01 5 140553975 140553975 A G PCDHB7 Missense_Mutation p.D520G 0.35 deleterious_low_confidence(0) probably_damaging(0.919) TCGA-B7-5818-01 5 140720519 140720519 A G PCDHGA2 Missense_Mutation p.T661A 0.21 deleterious_low_confidence(0.01) benign(0.443) TCGA-B7-5818-01 5 140720559 140720559 A G PCDHGA2 Missense_Mutation p.D674G 0.19 deleterious_low_confidence(0.01) benign(0.216) TCGA-B7-5818-01 5 140724034 140724034 T C PCDHGA3 Missense_Mutation p.L145P 0.34 tolerated_low_confidence(0.22) possibly_damaging(0.566) TCGA-B7-5818-01 5 140751700 140751700 G A PCDHGB3 Missense_Mutation p.R580H 0.40 deleterious(0.01) probably_damaging(0.992) TCGA-B7-5818-01 5 14601526 14601526 C T FAM105A Missense_Mutation p.T108I 0.35 deleterious(0) possibly_damaging(0.628) TCGA-B7-5818-01 5 150901495 150901495 G A FAT2 Silent p.I3553I 0.29 TCGA-B7-5818-01 5 172410823 172410823 A G ATP6V0E1 5'UTR 0.29 TCGA-B7-5818-01 5 180166564 180166564 G A OR2Y1 Silent p.A165A 0.35 TCGA-B7-5818-01 5 33937024 33937024 C T RXFP3 Missense_Mutation p.A60V 0.44 tolerated(0.07) benign(0.084) TCGA-B7-5818-01 5 34686994 34686994 C T RAI14 5'UTR 0.35 TCGA-B7-5818-01 5 35068965 35068965 T C PRLR Missense_Mutation p.D234G 0.30 deleterious(0) probably_damaging(0.922) TCGA-B7-5818-01 5 70805419 70805419 C A BDP1 Missense_Mutation p.L834I 0.26 tolerated(0.1) benign(0.19) TCGA-B7-5818-01 5 74001088 74001088 A T HEXB Silent p.I238I 0.29 TCGA-B7-5818-01 5 78324391 78324391 C A DMGDH Missense_Mutation p.A633S 0.29 tolerated(0.07) possibly_damaging(0.517) TCGA-B7-5818-01 5 90124912 90124912 C T GPR98 Missense_Mutation p.A5507V 0.25 benign(0.01) TCGA-B7-5818-01 6 105526496 105526496 C T LIN28B Silent p.G197G 0.28 TCGA-B7-5818-01 6 10907896 10907896 T G SYCP2L Missense_Mutation p.I266M 0.27 deleterious(0.02) possibly_damaging(0.629) TCGA-B7-5818-01 6 110777963 110777963 T G SLC22A16 Missense_Mutation p.N104T 0.27 tolerated(0.41) benign(0) TCGA-B7-5818-01 6 112041260 112041260 A G FYN 5'UTR 0.30 TCGA-B7-5818-01 6 126288037 126288037 A T HINT3 Missense_Mutation p.E69V 0.38 deleterious(0) probably_damaging(0.913) TCGA-B7-5818-01 6 151281519 151281519 A G MTHFD1L Missense_Mutation p.K638E 0.33 deleterious(0.01) benign(0.217) TCGA-B7-5818-01 6 1611204 1611204 A C FOXC1 Missense_Mutation p.K175T 0.33 deleterious(0) probably_damaging(0.932) TCGA-B7-5818-01 6 28219918 28219918 T C ZKSCAN4 5'UTR 0.20 TCGA-B7-5818-01 6 28269472 28269472 T A PGBD1 Missense_Mutation p.L614H 0.32 deleterious(0) probably_damaging(1) TCGA-B7-5818-01 6 30671627 30671627 A C MDC1 Missense_Mutation p.L1778R 0.35 deleterious(0.01) probably_damaging(0.996) TCGA-B7-5818-01 6 32261435 32261435 T G C6orf10 Missense_Mutation p.K339Q 0.29 tolerated(0.07) possibly_damaging(0.706) TCGA-B7-5818-01 6 32974922 32974922 G A HLA-DOA Silent p.G228G 0.33 TCGA-B7-5818-01 6 37626122 37626122 C T MDGA1 Missense_Mutation p.R94H 0.14 tolerated(0.08) probably_damaging(0.938) TCGA-B7-5818-01 6 38877485 38877485 C T DNAH8 Silent p.D3018D 0.29 TCGA-B7-5818-01 6 38906676 38906676 C T DNAH8 Silent p.H3756H 0.41 TCGA-B7-5818-01 6 44320470 44320470 T G SPATS1 Missense_Mutation p.N49K 0.40 tolerated_low_confidence(1) benign(0) TCGA-B7-5818-01 6 46656373 46656373 G A TDRD6 Missense_Mutation p.V170I 0.29 tolerated(0.1) possibly_damaging(0.604) TCGA-B7-5818-01 6 46658380 46658380 A G TDRD6 Missense_Mutation p.S839G 0.40 deleterious(0.02) benign(0.035) TCGA-B7-5818-01 6 6174920 6174920 C T F13A1 Missense_Mutation p.R547H 0.38 tolerated(0.49) benign(0.001) TCGA-B7-5818-01 6 63990680 63990680 G A LGSN Missense_Mutation p.S259F 0.25 deleterious(0.04) benign(0.224) TCGA-B7-5818-01 6 70409038 70409038 A C LMBRD1 Missense_Mutation p.F412C 0.33 deleterious(0) probably_damaging(0.962) TCGA-B7-5818-01 6 72967833 72967833 T C RIMS1 Missense_Mutation p.Y926H 0.35 deleterious(0.02) probably_damaging(0.998) TCGA-B7-5818-01 6 75833113 75833113 T - COL12A1 Frame_Shift_Del p.K2293Nfs*35 0.43 TCGA-B7-5818-01 6 99849296 99849296 G A PNISR Missense_Mutation p.S513F 0.28 deleterious_low_confidence(0.02) possibly_damaging(0.683) TCGA-B7-5818-01 7 100013925 100013925 T G ZCWPW1 Intron 0.19 TCGA-B7-5818-01 7 102953581 102953581 C T PMPCB 3'UTR 0.23 TCGA-B7-5818-01 7 103183254 103183254 T C RELN Missense_Mutation p.S2199G 0.25 tolerated(0.18) benign(0) TCGA-B7-5818-01 7 105615310 105615310 A C CDHR3 Missense_Mutation p.I23L 0.24 tolerated(0.35) benign(0.004) TCGA-B7-5818-01 7 105673077 105673077 C T CDHR3 Silent p.G864G 0.26 TCGA-B7-5818-01 7 116759770 116759770 C T ST7 Silent p.V130V 0.21 TCGA-B7-5818-01 7 122342678 122342678 T G RNF148 Missense_Mutation p.N43H 0.07 deleterious(0) probably_damaging(0.993) TCGA-B7-5818-01 7 127732207 127732207 A G SND1 3'UTR 0.26 TCGA-B7-5818-01 7 128470736 128470736 C T FLNC Silent p.G15G 0.28 TCGA-B7-5818-01 7 128630217 128630217 C T TNPO3 Intron 0.48 TCGA-B7-5818-01 7 134890686 134890686 G A WDR91 Missense_Mutation p.S240L 0.25 deleterious(0.03) benign(0.178) TCGA-B7-5818-01 7 137565174 137565174 G A CREB3L2 3'UTR 0.40 TCGA-B7-5818-01 7 140285447 140285447 T G DENND2A Missense_Mutation p.K396T 0.25 deleterious(0.03) probably_damaging(0.986) TCGA-B7-5818-01 7 142250965 142250965 T C TRBV6-4 Missense_Mutation p.T28A 0.22 deleterious(0.02) benign(0.002) TCGA-B7-5818-01 7 143002236 143002236 T G CASP2 3'UTR 0.29 TCGA-B7-5818-01 7 147183024 147183024 C A CNTNAP2 Intron 0.16 TCGA-B7-5818-01 7 148903882 148903882 T C ZNF282 Missense_Mutation p.V227A 0.23 deleterious(0.01) benign(0.197) TCGA-B7-5818-01 7 15427074 15427074 C T AGMO Missense_Mutation p.G305D 0.23 tolerated(0.24) benign(0.004) TCGA-B7-5818-01 7 21751479 21751479 G A DNAH11 Splice_Site p.X2335_splice 0.38 TCGA-B7-5818-01 7 27187000 27187000 G A HOXA6 Silent p.L123L 0.23 TCGA-B7-5818-01 7 30695305 30695305 A G CRHR2 Missense_Mutation p.L342P 0.26 deleterious(0) probably_damaging(1) TCGA-B7-5818-01 7 35674016 35674016 A C HERPUD2 Missense_Mutation p.F322C 0.25 deleterious(0) probably_damaging(0.987) TCGA-B7-5818-01 7 36580049 36580049 G A AOAH Silent p.S394S 0.22 TCGA-B7-5818-01 7 44801066 44801066 A G ZMIZ2 Missense_Mutation p.E420G 0.17 deleterious(0) possibly_damaging(0.821) TCGA-B7-5818-01 7 5104689 5104689 A T RBAK Missense_Mutation p.K534N 0.19 tolerated(0.06) benign(0.054) TCGA-B7-5818-01 7 57529170 57529170 T G ZNF716 Missense_Mutation p.L335V 0.28 tolerated(0.54) benign(0.037) TCGA-B7-5818-01 7 6442041 6442041 C T RAC1 Silent p.P200P 0.21 TCGA-B7-5818-01 7 6803603 6803603 G A RSPH10B2 Silent p.T148T 0.16 TCGA-B7-5818-01 7 7676645 7676645 C T RPA3 Missense_Mutation p.V118M 0.23 tolerated(0.13) benign(0.001) TCGA-B7-5818-01 7 76941425 76941425 T C GSAP Missense_Mutation p.K789R 0.28 tolerated(0.25) benign(0.072) TCGA-B7-5818-01 7 82474775 82474775 C T PCLO Missense_Mutation p.D4620N 0.14 unknown(0) TCGA-B7-5818-01 7 90895500 90895500 G A FZD1 Nonsense_Mutation p.W435* 0.24 TCGA-B7-5818-01 7 92763078 92763078 A C SAMD9L Missense_Mutation p.I736S 0.26 deleterious(0) benign(0.281) TCGA-B7-5818-01 8 10383244 10383244 T C PRSS55 Missense_Mutation p.V50A 0.32 tolerated(0.52) benign(0.019) TCGA-B7-5818-01 8 120118230 120118230 A T COLEC10 Missense_Mutation p.N212Y 0.37 deleterious(0) probably_damaging(0.983) TCGA-B7-5818-01 8 125580423 125580423 A G MTSS1 Intron 0.22 TCGA-B7-5818-01 8 12960317 12960317 A C DLC1 Missense_Mutation p.I516M 0.22 deleterious(0) possibly_damaging(0.646) TCGA-B7-5818-01 8 130763788 130763788 T C GSDMC Missense_Mutation p.N315D 0.28 tolerated(1) benign(0.005) TCGA-B7-5818-01 8 130788350 130788350 T G GSDMC Missense_Mutation p.K134N 0.36 tolerated(0.38) benign(0.096) TCGA-B7-5818-01 8 2092696 2092696 C T MYOM2 Nonsense_Mutation p.Q1397* 0.33 TCGA-B7-5818-01 8 2836245 2836245 A G CSMD1 Missense_Mutation p.Y2819H 0.43 probably_damaging(0.93) TCGA-B7-5818-01 8 30034704 30034704 C T DCTN6 Missense_Mutation p.T86I 0.23 tolerated(0.13) benign(0.005) TCGA-B7-5818-01 8 38095637 38095637 T G DDHD2 Missense_Mutation p.S178A 0.27 tolerated(0.16) benign(0.003) TCGA-B7-5818-01 8 42229227 42229227 C T POLB 3'UTR 0.33 TCGA-B7-5818-01 8 53028967 53028967 C T ST18 Missense_Mutation p.M957I 0.25 deleterious(0.02) possibly_damaging(0.493) TCGA-B7-5818-01 8 67428149 67428149 G A C8orf46 Missense_Mutation p.M154I 0.35 tolerated(0.17) benign(0.003) TCGA-B7-5818-01 8 95527160 95527160 T G KIAA1429 Missense_Mutation p.E896D 0.25 tolerated(0.11) probably_damaging(0.994) TCGA-B7-5818-01 9 100617277 100617277 G A FOXE1 Missense_Mutation p.A361T 0.29 tolerated(0.71) benign(0.008) TCGA-B7-5818-01 9 107533246 107533246 G A NIPSNAP3B Missense_Mutation p.V183I 0.38 tolerated(0.06) benign(0.167) TCGA-B7-5818-01 9 112899000 112899000 T G PALM2-AKAP2 Missense_Mutation p.C392W 0.37 deleterious_low_confidence(0.04) possibly_damaging(0.831) TCGA-B7-5818-01 9 116854134 116854134 T G KIF12 3'UTR 0.40 TCGA-B7-5818-01 9 131702969 131702969 C T PHYHD1 Missense_Mutation p.S219F 0.07 deleterious_low_confidence(0) benign(0.001) TCGA-B7-5818-01 9 136208530 136208530 T G MED22 Missense_Mutation p.E143A 0.33 deleterious_low_confidence(0.01) benign(0.108) TCGA-B7-5818-01 9 139995979 139995979 C T MAN1B1 Missense_Mutation p.S370F 0.35 deleterious(0) probably_damaging(0.984) TCGA-B7-5818-01 9 17309068 17309068 T G CNTLN Missense_Mutation p.L387V 0.38 deleterious(0) probably_damaging(0.998) TCGA-B7-5818-01 9 27949805 27949805 C T LINGO2 Missense_Mutation p.E289K 0.41 tolerated(0.06) benign(0.06) TCGA-B7-5818-01 9 32430504 32430504 C T ACO1 Missense_Mutation p.S553F 0.45 deleterious(0) probably_damaging(1) TCGA-B7-5818-01 9 32634599 32634599 C T TAF1L Missense_Mutation p.D327N 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-B7-5818-01 9 33900231 33900231 A G UBE2R2 Silent p.E108E 0.38 TCGA-B7-5818-01 9 35107429 35107429 T G FAM214B Missense_Mutation p.K281N 0.39 deleterious(0) possibly_damaging(0.541) TCGA-B7-5818-01 9 35295915 35295915 G A UNC13B Missense_Mutation p.R250Q 0.29 tolerated_low_confidence(0.99) benign(0.001) TCGA-B7-5818-01 9 77598770 77598770 A G C9orf41 Silent p.S381S 0.30 TCGA-B7-5818-01 9 86518481 86518481 C T KIF27 Missense_Mutation p.V318I 0.33 tolerated(0.81) benign(0.028) TCGA-B7-5818-01 9 90589344 90589344 G A CDK20 Silent p.I6I 0.25 TCGA-B7-5818-01 9 98691033 98691033 G A ERCC6L2 Silent p.A557A 0.35 TCGA-B7-5818-01 X 101910393 101910393 T G GPRASP1 Missense_Mutation p.F518V 0.66 tolerated(0.1) benign(0.07) TCGA-B7-5818-01 X 107978572 107978572 C T IRS4 Missense_Mutation p.E335K 0.70 deleterious(0) possibly_damaging(0.766) TCGA-B7-5818-01 X 129629095 129629095 A T RP1-274L7.1 Intron 0.94 TCGA-B7-5818-01 X 129771267 129771267 T G ENOX2 Missense_Mutation p.E445A 0.72 tolerated(0.27) benign(0.427) TCGA-B7-5818-01 X 13337535 13337535 T G ATXN3L Missense_Mutation p.E173D 0.72 deleterious(0.03) possibly_damaging(0.854) TCGA-B7-5818-01 X 142717307 142717307 C A SLITRK4 Missense_Mutation p.V540L 0.04 tolerated(0.23) probably_damaging(0.97) TCGA-B7-5818-01 X 146342080 146342080 G A MIR509-1 RNA 0.76 TCGA-B7-5818-01 X 151092439 151092439 C T MAGEA4 Silent p.D101D 0.70 TCGA-B7-5818-01 X 151935737 151935737 G T MAGEA3 Missense_Mutation p.Q144K 0.72 tolerated(1) benign(0.001) TCGA-B7-5818-01 X 55479479 55479479 G A MAGEH1 3'UTR 0.74 TCGA-B7-5818-01 X 8555945 8555945 A G KAL1 Missense_Mutation p.S206P 0.68 deleterious(0) probably_damaging(0.999) TCGA-B7-A5TI-01 10 102248651 102248651 C T SEC31B Silent p.A1084A 0.26 TCGA-B7-A5TI-01 10 102587324 102587324 C - PAX2 Frame_Shift_Del p.R403Gfs*37 0.27 TCGA-B7-A5TI-01 10 103587011 103587011 G A KCNIP2 3'Flank 0.26 TCGA-B7-A5TI-01 10 103919299 103919299 A - NOLC1 Frame_Shift_Del p.K280Nfs*3 0.36 TCGA-B7-A5TI-01 10 104160788 104160788 C T NFKB2 Missense_Mutation p.R685C 0.38 deleterious(0.02) possibly_damaging(0.893) TCGA-B7-A5TI-01 10 105200312 105200312 G T PDCD11 Nonsense_Mutation p.E1472* 0.38 TCGA-B7-A5TI-01 10 1055495 1055495 A G GTPBP4 Silent p.G406G 0.30 TCGA-B7-A5TI-01 10 105809185 105809185 C T COL17A1 Missense_Mutation p.G737R 0.20 probably_damaging(0.998) TCGA-B7-A5TI-01 10 117486773 117486773 C T ATRNL1 Nonsense_Mutation p.R1271* 0.36 TCGA-B7-A5TI-01 10 119003614 119003614 C T SLC18A2 Missense_Mutation p.S85L 0.31 tolerated(0.07) benign(0.008) TCGA-B7-A5TI-01 10 120810064 120810066 CTC - EIF3A In_Frame_Del p.E814del 0.21 TCGA-B7-A5TI-01 10 123274810 123274810 T C FGFR2 Missense_Mutation p.T371A 0.26 tolerated(0.82) benign(0.055) TCGA-B7-A5TI-01 10 135015020 135015020 C T KNDC1 Missense_Mutation p.A1002V 0.30 tolerated(0.12) benign(0.005) TCGA-B7-A5TI-01 10 135203245 135203245 C T PAOX Silent p.G462G 0.25 TCGA-B7-A5TI-01 10 14862151 14862152 - T CDNF Frame_Shift_Ins p.T131Nfs*8 0.26 TCGA-B7-A5TI-01 10 23287243 23287243 C A ARMC3 Missense_Mutation p.L448M 0.24 deleterious(0) probably_damaging(0.967) TCGA-B7-A5TI-01 10 25314401 25314401 T - THNSL1 3'UTR 0.32 TCGA-B7-A5TI-01 10 43601893 43601893 C T RET Missense_Mutation p.R313W 0.23 deleterious(0) possibly_damaging(0.857) TCGA-B7-A5TI-01 10 47756087 47756087 G A ANXA8L2 Missense_Mutation p.A183T 0.20 deleterious(0) probably_damaging(1) TCGA-B7-A5TI-01 10 52390318 52390319 TT - RP11-50E11.3 RNA 0.25 TCGA-B7-A5TI-01 10 58118162 58118162 T C ZWINT 3'UTR 0.34 TCGA-B7-A5TI-01 10 5937131 5937131 C G FBXO18 Silent p.V45V 0.41 TCGA-B7-A5TI-01 10 61552696 61552696 C T CCDC6 Silent p.A468A 0.24 TCGA-B7-A5TI-01 10 70105434 70105434 C T RUFY2 3'UTR 0.39 TCGA-B7-A5TI-01 10 72511302 72511302 G A ADAMTS14 Silent p.L835L 0.29 TCGA-B7-A5TI-01 10 73111463 73111463 C T SLC29A3 Silent p.S176S 0.06 TCGA-B7-A5TI-01 10 74666423 74666423 G A OIT3 Missense_Mutation p.R205H 0.28 tolerated(0.1) probably_damaging(0.997) TCGA-B7-A5TI-01 10 89692905 89692905 G A PTEN Missense_Mutation p.R130Q 0.31 deleterious(0.02) probably_damaging(0.989) TCGA-B7-A5TI-01 10 98743878 98743878 G A C10orf12 Missense_Mutation p.A911T 0.34 tolerated(0.14) benign(0.051) TCGA-B7-A5TI-01 11 102567123 102567123 T G MMP27 Missense_Mutation p.E294A 0.26 deleterious(0) probably_damaging(1) TCGA-B7-A5TI-01 11 102962501 102962501 G - DCUN1D5 Intron 0.23 TCGA-B7-A5TI-01 11 10503704 10503704 C T AMPD3 Missense_Mutation p.P183L 0.37 tolerated(0.19) possibly_damaging(0.656) TCGA-B7-A5TI-01 11 111657044 111657044 C T ALG9 3'UTR 0.32 TCGA-B7-A5TI-01 11 117647601 117647601 C T DSCAML1 Missense_Mutation p.G199D 0.44 deleterious(0) probably_damaging(0.978) TCGA-B7-A5TI-01 11 118375333 118375333 C A KMT2A Missense_Mutation p.P2909H 0.30 probably_damaging(0.994) TCGA-B7-A5TI-01 11 123777147 123777147 A - OR8D4 Frame_Shift_Del p.N5Tfs*5 0.26 TCGA-B7-A5TI-01 11 126137087 126137087 T C SRPR Missense_Mutation p.K170R 0.33 tolerated(0.12) benign(0.108) TCGA-B7-A5TI-01 11 126396433 126396433 T C KIRREL3 Missense_Mutation p.S95G 0.24 tolerated(1) benign(0.007) TCGA-B7-A5TI-01 11 134253718 134253718 G A B3GAT1 Silent p.R159R 0.29 TCGA-B7-A5TI-01 11 134254005 134254005 C T B3GAT1 Missense_Mutation p.V64M 0.27 tolerated(0.16) benign(0.013) TCGA-B7-A5TI-01 11 17426065 17426065 G A ABCC8 Missense_Mutation p.A1184V 0.32 deleterious(0.01) benign(0.036) TCGA-B7-A5TI-01 11 1775227 1775227 G A CTSD Silent p.G323G 0.53 TCGA-B7-A5TI-01 11 20112450 20112450 G A NAV2 Missense_Mutation p.M1905I 0.27 tolerated(0.1) benign(0.018) TCGA-B7-A5TI-01 11 20424474 20424474 C T PRMT3 Nonsense_Mutation p.R239* 0.24 TCGA-B7-A5TI-01 11 314210 314210 C - IFITM1 Frame_Shift_Del p.S16Afs*9 0.20 TCGA-B7-A5TI-01 11 36595794 36595794 C T RAG1 Missense_Mutation p.R314W 0.20 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-B7-A5TI-01 11 45955606 45955607 - G PHF21A Frame_Shift_Ins p.A653Cfs*22 0.25 TCGA-B7-A5TI-01 11 47373000 47373000 C T MYBPC3 Missense_Mutation p.V28M 0.26 deleterious_low_confidence(0.03) possibly_damaging(0.704) TCGA-B7-A5TI-01 11 47858456 47858456 G A NUP160 Nonsense_Mutation p.R309* 0.17 TCGA-B7-A5TI-01 11 48346746 48346747 - T OR4C3 Frame_Shift_Ins p.L88Pfs*8 0.12 TCGA-B7-A5TI-01 11 4968091 4968091 C T OR51A4 Silent p.L80L 0.13 TCGA-B7-A5TI-01 11 57184137 57184137 G A SLC43A3 Silent p.C226C 0.34 TCGA-B7-A5TI-01 11 57310172 57310172 G A SMTNL1 Silent p.A37A 0.30 TCGA-B7-A5TI-01 11 5758485 5758485 C A OR56B1 Missense_Mutation p.L247M 0.26 deleterious(0.01) possibly_damaging(0.86) TCGA-B7-A5TI-01 11 59211505 59211505 G T OR5A1 Silent p.L288L 0.22 TCGA-B7-A5TI-01 11 62301254 62301254 G A AHNAK Missense_Mutation p.S212L 0.36 possibly_damaging(0.783) TCGA-B7-A5TI-01 11 62346096 62346096 C T TUT1 Missense_Mutation p.R404H 0.23 deleterious(0.03) probably_damaging(0.924) TCGA-B7-A5TI-01 11 63273794 63273794 C T LGALS12 5'Flank 0.32 TCGA-B7-A5TI-01 11 63682238 63682238 G A RCOR2 Silent p.A123A 0.30 TCGA-B7-A5TI-01 11 64022382 64022382 C T PLCB3 Missense_Mutation p.R87W 0.29 deleterious(0) probably_damaging(0.995) TCGA-B7-A5TI-01 11 6413286 6413286 C - SMPD1 Frame_Shift_Del p.F333Sfs*52 0.23 TCGA-B7-A5TI-01 11 6470404 6470404 C T TRIM3 Missense_Mutation p.D697N 0.13 tolerated(0.13) probably_damaging(0.998) TCGA-B7-A5TI-01 11 65302728 65302728 G A SCYL1 Missense_Mutation p.E421K 0.27 tolerated(0.16) benign(0.266) TCGA-B7-A5TI-01 11 65422011 65422011 C A RELA Missense_Mutation p.E498D 0.18 tolerated_low_confidence(0.21) probably_damaging(0.977) TCGA-B7-A5TI-01 11 6662504 6662504 C T DCHS1 Missense_Mutation p.R114H 0.35 tolerated(0.54) benign(0.001) TCGA-B7-A5TI-01 11 67767119 67767119 C T UNC93B1 Missense_Mutation p.A142T 0.28 deleterious(0) possibly_damaging(0.634) TCGA-B7-A5TI-01 11 6789417 6789417 T C OR2AG2 Missense_Mutation p.M258V 0.29 tolerated(0.09) benign(0.054) TCGA-B7-A5TI-01 11 68676073 68676073 C G IGHMBP2 Missense_Mutation p.S174C 0.30 deleterious(0.01) benign(0.014) TCGA-B7-A5TI-01 11 71510745 71510745 G A FAM86C1 3'UTR 0.20 TCGA-B7-A5TI-01 11 72415278 72415278 C T ARAP1 Silent p.R637R 0.18 TCGA-B7-A5TI-01 11 75136619 75136619 G A KLHL35 Missense_Mutation p.A398V 0.44 tolerated(0.86) unknown(0) TCGA-B7-A5TI-01 11 78368952 78368952 A - TENM4 3'UTR 0.29 TCGA-B7-A5TI-01 12 10223808 10223808 A C CLEC1A 3'UTR 0.17 TCGA-B7-A5TI-01 12 10365771 10365771 A G GABARAPL1 Missense_Mutation p.K15E 0.24 tolerated(0.4) benign(0.254) TCGA-B7-A5TI-01 12 106480594 106480594 A G NUAK1 Missense_Mutation p.I144T 0.28 deleterious(0) probably_damaging(0.999) TCGA-B7-A5TI-01 12 108051422 108051422 A G BTBD11 Missense_Mutation p.Q1081R 0.31 tolerated(0.46) benign(0.012) TCGA-B7-A5TI-01 12 113307812 113307812 G T RPH3A Missense_Mutation p.G255V 0.20 tolerated(0.23) benign(0.018) TCGA-B7-A5TI-01 12 120565457 120565457 G A GCN1L1 3'UTR 0.15 TCGA-B7-A5TI-01 12 120662050 120662050 G - PXN Frame_Shift_Del p.V49Sfs*18 0.27 TCGA-B7-A5TI-01 12 121987461 121987461 G A KDM2B Silent p.Y160Y 0.07 TCGA-B7-A5TI-01 12 122292668 122292668 G A HPD Missense_Mutation p.R119W 0.36 tolerated(0.05) possibly_damaging(0.634) TCGA-B7-A5TI-01 12 122745872 122745872 T C VPS33A Missense_Mutation p.Y140C 0.31 deleterious(0.04) benign(0.25) TCGA-B7-A5TI-01 12 123052858 123052858 T - KNTC1 Frame_Shift_Del p.L554Yfs*3 0.18 TCGA-B7-A5TI-01 12 123462998 123462998 G A OGFOD2 Missense_Mutation p.R78H 0.20 deleterious(0) benign(0.108) TCGA-B7-A5TI-01 12 123649959 123649959 T - MPHOSPH9 Frame_Shift_Del p.K734Sfs*11 0.25 TCGA-B7-A5TI-01 12 123702941 123702941 C A MPHOSPH9 Missense_Mutation p.K174N 0.07 deleterious(0.02) benign(0.28) TCGA-B7-A5TI-01 12 124862925 124862927 CTT - NCOR2 In_Frame_Del p.K675del 0.22 TCGA-B7-A5TI-01 12 18838556 18838556 T C PLCZ1 Intron 0.25 TCGA-B7-A5TI-01 12 21711172 21711172 G A GYS2 Missense_Mutation p.R462W 0.24 deleterious(0) probably_damaging(1) TCGA-B7-A5TI-01 12 33592597 33592597 C T SYT10 5'UTR 0.28 TCGA-B7-A5TI-01 12 3389597 3389597 A G TSPAN9 Missense_Mutation p.H127R 0.27 tolerated(0.06) benign(0.007) TCGA-B7-A5TI-01 12 42858682 42858682 G A PRICKLE1 Missense_Mutation p.T385I 0.07 tolerated(0.13) benign(0.004) TCGA-B7-A5TI-01 12 49437711 49437713 CTT - KMT2D In_Frame_Del p.K1753del 0.22 TCGA-B7-A5TI-01 12 49993687 49993687 G A FAM186B Missense_Mutation p.A579V 0.29 deleterious(0.03) benign(0.19) TCGA-B7-A5TI-01 12 50189470 50189471 - C NCKAP5L Frame_Shift_Ins p.I725Dfs*85 0.33 TCGA-B7-A5TI-01 12 50480099 50480099 C G SMARCD1 Silent p.V111V 0.43 TCGA-B7-A5TI-01 12 52378996 52378996 C T ACVR1B Nonsense_Mutation p.R375* 0.32 TCGA-B7-A5TI-01 12 52761121 52761121 A C KRT85 Silent p.A23A 0.38 TCGA-B7-A5TI-01 12 52788766 52788766 T G KRT82 Missense_Mutation p.K512T 0.28 deleterious_low_confidence(0.01) probably_damaging(0.981) TCGA-B7-A5TI-01 12 52865022 52865022 T C KRT6C Missense_Mutation p.N324S 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-B7-A5TI-01 12 56078905 56078905 G C ITGA7 Missense_Mutation p.I1121M 0.26 deleterious_low_confidence(0.01) probably_damaging(0.938) TCGA-B7-A5TI-01 12 56234489 56234489 C T MMP19 Missense_Mutation p.R161H 0.06 deleterious(0.03) probably_damaging(0.94) TCGA-B7-A5TI-01 12 57432301 57432301 G T MYO1A Missense_Mutation p.P552H 0.33 deleterious(0) probably_damaging(0.999) TCGA-B7-A5TI-01 12 57588181 57588181 G A LRP1 Missense_Mutation p.V2655M 0.27 benign(0.02) TCGA-B7-A5TI-01 12 58016641 58016641 T C SLC26A10 Missense_Mutation p.L288P 0.33 deleterious(0) probably_damaging(1) TCGA-B7-A5TI-01 12 64377821 64377821 A - SRGAP1 Frame_Shift_Del p.A57Lfs*11 0.24 TCGA-B7-A5TI-01 12 64588303 64588303 C T C12orf66 Silent p.A219A 0.28 TCGA-B7-A5TI-01 12 70004125 70004125 C T LRRC10 Missense_Mutation p.R165H 0.32 tolerated(0.08) benign(0.001) TCGA-B7-A5TI-01 12 70988367 70988367 C - PTPRB Frame_Shift_Del p.V466Wfs*13 0.24 TCGA-B7-A5TI-01 12 75601379 75601379 C T KCNC2 Missense_Mutation p.V129M 0.32 deleterious(0) probably_damaging(0.99) TCGA-B7-A5TI-01 12 90036054 90036054 T C ATP2B1 Missense_Mutation p.K96R 0.29 deleterious(0.02) probably_damaging(0.994) TCGA-B7-A5TI-01 12 994696 994696 A G WNK1 Missense_Mutation p.I1576V 0.30 tolerated_low_confidence(1) benign(0.01) TCGA-B7-A5TI-01 13 107147297 107147297 C T EFNB2 Missense_Mutation p.R182H 0.20 tolerated(0.55) benign(0.002) TCGA-B7-A5TI-01 13 109779804 109779804 G A MYO16 Silent p.P1297P 0.18 TCGA-B7-A5TI-01 13 32954023 32954023 A - BRCA2 Frame_Shift_Del p.T3033Lfs*29 0.62 TCGA-B7-A5TI-01 13 37679360 37679360 C T CSNK1A1L Missense_Mutation p.V12I 0.65 tolerated_low_confidence(0.46) benign(0.001) TCGA-B7-A5TI-01 13 43986137 43986137 G A ENOX1 Silent p.S41S 0.61 TCGA-B7-A5TI-01 13 44443474 44443474 A G CCDC122 Silent p.P13P 0.55 TCGA-B7-A5TI-01 13 47409099 47409099 T - HTR2A Frame_Shift_Del p.K430Rfs*19 0.43 TCGA-B7-A5TI-01 13 53049113 53049113 G A CKAP2 Missense_Mutation p.R630H 0.65 tolerated(0.05) benign(0.023) TCGA-B7-A5TI-01 14 105417838 105417838 G A AHNAK2 Missense_Mutation p.A1317V 0.48 possibly_damaging(0.682) TCGA-B7-A5TI-01 14 106621992 106621992 G A IGHV3-16 Missense_Mutation p.R85C 0.39 deleterious_low_confidence(0) benign(0.042) TCGA-B7-A5TI-01 14 107218903 107218903 C T IGHV3-74 Missense_Mutation p.A42T 0.06 deleterious_low_confidence(0.03) benign(0.108) TCGA-B7-A5TI-01 14 24884689 24884689 G A NYNRIN Missense_Mutation p.R1245Q 0.41 tolerated(0.38) benign(0.002) TCGA-B7-A5TI-01 14 51226698 51226698 G C NIN Missense_Mutation p.T759S 0.36 tolerated(0.2) possibly_damaging(0.863) TCGA-B7-A5TI-01 14 51464842 51464842 T C TRIM9 Missense_Mutation p.N510S 0.30 tolerated(0.14) benign(0.005) TCGA-B7-A5TI-01 14 52477634 52477634 G C NID2 Missense_Mutation p.L1228V 0.37 deleterious(0) probably_damaging(0.941) TCGA-B7-A5TI-01 14 64519522 64519522 G A SYNE2 Missense_Mutation p.R2964H 0.48 benign(0) TCGA-B7-A5TI-01 14 65253771 65253771 G A SPTB Missense_Mutation p.T971M 0.28 tolerated(0.07) benign(0.003) TCGA-B7-A5TI-01 14 70634434 70634434 G T SLC8A3 Missense_Mutation p.L236I 0.52 tolerated(0.08) benign(0.393) TCGA-B7-A5TI-01 14 75142935 75142935 G A AREL1 Silent p.L247L 0.47 TCGA-B7-A5TI-01 14 88945669 88945669 C T PTPN21 Silent p.S702S 0.45 TCGA-B7-A5TI-01 14 93176150 93176151 - G LGMN Frame_Shift_Ins p.L296Pfs*8 0.32 TCGA-B7-A5TI-01 14 94069633 94069633 T C UNC79 Missense_Mutation p.L1031S 0.38 tolerated(0.23) benign(0.441) TCGA-B7-A5TI-01 14 94088838 94088838 G A UNC79 Silent p.S1576S 0.54 TCGA-B7-A5TI-01 14 96761339 96761339 G T ATG2B Missense_Mutation p.S1795Y 0.12 deleterious(0.04) possibly_damaging(0.641) TCGA-B7-A5TI-01 14 96875239 96875239 G A AK7 Silent p.S153S 0.32 TCGA-B7-A5TI-01 15 100636647 100636647 G A ADAMTS17 Missense_Mutation p.A684V 0.35 tolerated(0.12) probably_damaging(0.993) TCGA-B7-A5TI-01 15 22382892 22382892 C T OR4N4 Silent p.A140A 0.20 TCGA-B7-A5TI-01 15 22863109 22863109 A - TUBGCP5 Frame_Shift_Del p.D713Ifs*5 0.31 TCGA-B7-A5TI-01 15 25349805 25349805 A - SNHG14 RNA 0.26 TCGA-B7-A5TI-01 15 31776477 31776477 C T OTUD7A Missense_Mutation p.A601T 0.25 tolerated_low_confidence(0.4) benign(0.001) TCGA-B7-A5TI-01 15 35152260 35152260 T C AQR Missense_Mutation p.T1376A 0.28 tolerated(0.83) benign(0.002) TCGA-B7-A5TI-01 15 40584286 40584286 C A PLCB2 Missense_Mutation p.E835D 0.05 tolerated(0.43) benign(0.003) TCGA-B7-A5TI-01 15 40659835 40659835 C T DISP2 Missense_Mutation p.R508C 0.26 deleterious(0) probably_damaging(0.992) TCGA-B7-A5TI-01 15 40917822 40917822 C T CASC5 Missense_Mutation p.T1813M 0.19 deleterious(0) probably_damaging(0.97) TCGA-B7-A5TI-01 15 42116151 42116151 G A MAPKBP1 Missense_Mutation p.V1375I 0.35 tolerated(0.49) benign(0.005) TCGA-B7-A5TI-01 15 42168337 42168337 C T SPTBN5 Missense_Mutation p.R1366H 0.34 benign(0.009) TCGA-B7-A5TI-01 15 43017428 43017428 G A CDAN1 Silent p.L1158L 0.21 TCGA-B7-A5TI-01 15 43661984 43661984 C A ZSCAN29 Missense_Mutation p.C43F 0.07 deleterious(0) probably_damaging(0.999) TCGA-B7-A5TI-01 15 51503059 51503059 G A CYP19A1 Silent p.N486N 0.21 TCGA-B7-A5TI-01 15 52504010 52504010 G A MYO5C Missense_Mutation p.R1405C 0.38 deleterious(0) probably_damaging(1) TCGA-B7-A5TI-01 15 60789759 60789759 C A RORA Missense_Mutation p.M522I 0.27 tolerated(0.12) benign(0) TCGA-B7-A5TI-01 15 63970177 63970179 CTC - HERC1 In_Frame_Del p.G2312del 0.39 TCGA-B7-A5TI-01 15 65957052 65957053 - T DENND4A Frame_Shift_Ins p.Y1789Ifs*11 0.21 TCGA-B7-A5TI-01 15 66416314 66416314 C T MEGF11 Silent p.S41S 0.27 TCGA-B7-A5TI-01 15 74327683 74327683 C T PML Intron 0.35 TCGA-B7-A5TI-01 15 77906642 77906642 G A LINGO1 Missense_Mutation p.P536L 0.29 tolerated(0.74) benign(0.009) TCGA-B7-A5TI-01 15 79092655 79092655 C T ADAMTS7 Missense_Mutation p.R112Q 0.52 deleterious(0.01) probably_damaging(0.941) TCGA-B7-A5TI-01 15 89008087 89008087 G A MRPL46 Nonsense_Mutation p.R146* 0.36 TCGA-B7-A5TI-01 15 89382100 89382100 C T ACAN Missense_Mutation p.R93C 0.32 deleterious(0) unknown(0) TCGA-B7-A5TI-01 15 90320318 90320318 G A MESP2 Missense_Mutation p.D244N 0.18 tolerated(0.5) benign(0.001) TCGA-B7-A5TI-01 15 92706177 92706177 A T SLCO3A1 Missense_Mutation p.R649W 0.31 deleterious(0) probably_damaging(0.931) TCGA-B7-A5TI-01 16 109300 109300 G - RHBDF1 Frame_Shift_Del p.E648Rfs*30 0.12 TCGA-B7-A5TI-01 16 15132044 15132044 A G NTAN1 Silent p.A259A 0.31 TCGA-B7-A5TI-01 16 17451881 17451881 G T XYLT1 Silent p.T130T 0.22 TCGA-B7-A5TI-01 16 19702725 19702727 AAC - C16orf62 In_Frame_Del p.N950del 0.41 TCGA-B7-A5TI-01 16 21123071 21123071 C T DNAH3 Missense_Mutation p.V659M 0.35 deleterious(0.02) probably_damaging(0.978) TCGA-B7-A5TI-01 16 2114386 2114386 C T TSC2 Silent p.C519C 0.36 TCGA-B7-A5TI-01 16 22268982 22268984 TCT - EEF2K In_Frame_Del p.F309del 0.39 TCGA-B7-A5TI-01 16 23197805 23197805 C T SCNN1G Silent p.C71C 0.36 TCGA-B7-A5TI-01 16 23453967 23453967 C A COG7 Splice_Site p.X146_splice 0.31 TCGA-B7-A5TI-01 16 24192204 24192204 G A PRKCB Silent p.V496V 0.31 TCGA-B7-A5TI-01 16 27840204 27840204 T C GSG1L Missense_Mutation p.I246V 0.28 tolerated(0.07) possibly_damaging(0.802) TCGA-B7-A5TI-01 16 28354296 28354296 G T NPIPB6 Missense_Mutation p.P304T 0.37 tolerated_low_confidence(0.44) benign(0.167) TCGA-B7-A5TI-01 16 2903155 2903155 G A PRSS22 Missense_Mutation p.A298V 0.27 tolerated(0.22) benign(0.021) TCGA-B7-A5TI-01 16 30018552 30018552 C T DOC2A Missense_Mutation p.R199H 0.31 deleterious(0) benign(0.031) TCGA-B7-A5TI-01 16 30583678 30583678 C A ZNF688 5'UTR 0.44 TCGA-B7-A5TI-01 16 30995407 30995407 C - SETD1A 3'UTR 0.41 TCGA-B7-A5TI-01 16 3591814 3591814 G A NLRC3 3'UTR 0.21 TCGA-B7-A5TI-01 16 396788 396788 G T AXIN1 Missense_Mutation p.P80T 0.32 tolerated(0.25) probably_damaging(0.999) TCGA-B7-A5TI-01 16 4308046 4308046 G - TFAP4 3'UTR 0.32 TCGA-B7-A5TI-01 16 4790590 4790590 C T C16orf71 Missense_Mutation p.A238V 0.20 tolerated(0.24) benign(0.001) TCGA-B7-A5TI-01 16 53352154 53352155 - A CHD9 Frame_Shift_Ins p.R2525Kfs*9 0.34 TCGA-B7-A5TI-01 16 56700800 56700800 G A MT1G Silent p.C59C 0.34 TCGA-B7-A5TI-01 16 65016020 65016020 T C CDH11 Missense_Mutation p.N395S 0.45 deleterious(0.02) possibly_damaging(0.589) TCGA-B7-A5TI-01 16 68835613 68835613 T - CDH1 Frame_Shift_Del p.S70Pfs*13 0.32 TCGA-B7-A5TI-01 16 70897000 70897000 G A HYDIN Missense_Mutation p.P3853S 0.37 probably_damaging(0.932) TCGA-B7-A5TI-01 16 71510004 71510004 C A ZNF19 Missense_Mutation p.G149V 0.38 tolerated(0.12) possibly_damaging(0.621) TCGA-B7-A5TI-01 16 83949020 83949020 G A MLYCD Missense_Mutation p.G470S 0.40 tolerated(0.59) benign(0.002) TCGA-B7-A5TI-01 16 85690894 85690894 G A GSE1 Missense_Mutation p.D442N 0.40 tolerated(0.29) possibly_damaging(0.765) TCGA-B7-A5TI-01 16 87368940 87368940 G - FBXO31 Frame_Shift_Del p.H322Qfs*27 0.40 TCGA-B7-A5TI-01 16 88706540 88706540 T A IL17C 3'UTR 0.45 TCGA-B7-A5TI-01 17 10424532 10424532 G T MYH2 3'UTR 0.27 TCGA-B7-A5TI-01 17 11711188 11711188 G A DNAH9 Missense_Mutation p.G2854S 0.31 benign(0.17) TCGA-B7-A5TI-01 17 13400018 13400018 G A HS3ST3A1 Silent p.I239I 0.20 TCGA-B7-A5TI-01 17 15441316 15441317 AA - TVP23C Intron 0.14 TCGA-B7-A5TI-01 17 15971326 15971326 G A NCOR1 Silent p.V1541V 0.26 TCGA-B7-A5TI-01 17 16527692 16527692 T C ZNF624 Missense_Mutation p.K170E 0.22 tolerated(0.22) benign(0.002) TCGA-B7-A5TI-01 17 17106229 17106229 C T PLD6 Missense_Mutation p.R204H 0.27 tolerated(0.06) benign(0.051) TCGA-B7-A5TI-01 17 17394888 17394888 C T MED9 3'UTR 0.33 TCGA-B7-A5TI-01 17 18539885 18539885 C T TBC1D28 Missense_Mutation p.V175M 0.25 tolerated(0.11) benign(0.044) TCGA-B7-A5TI-01 17 18654315 18654315 T C FBXW10 Silent p.D357D 0.21 TCGA-B7-A5TI-01 17 1933450 1933450 T C DPH1 Translation_Start_Site p.M1? 0.50 tolerated_low_confidence(0.09) unknown(0) TCGA-B7-A5TI-01 17 19611794 19611796 CTC - SLC47A2 In_Frame_Del p.E186del 0.23 TCGA-B7-A5TI-01 17 263351 263351 C T C17orf97 Silent p.P239P 0.42 TCGA-B7-A5TI-01 17 27049750 27049750 C A RPL23A Missense_Mutation p.H73Q 0.22 tolerated(0.18) possibly_damaging(0.459) TCGA-B7-A5TI-01 17 27899414 27899414 G - TP53I13 Frame_Shift_Del p.A258Rfs*60 0.24 TCGA-B7-A5TI-01 17 28788227 28788227 G A CPD Silent p.P1176P 0.28 TCGA-B7-A5TI-01 17 35937523 35937523 C G SYNRG Missense_Mutation p.E260Q 0.19 tolerated(0.09) benign(0.215) TCGA-B7-A5TI-01 17 36485655 36485655 G A GPR179 Missense_Mutation p.P1266L 0.32 tolerated(0.06) benign(0.085) TCGA-B7-A5TI-01 17 36717815 36717815 G A SRCIN1 Silent p.R528R 0.26 TCGA-B7-A5TI-01 17 37075003 37075003 T C LASP1 Missense_Mutation p.L253P 0.30 deleterious(0) probably_damaging(0.999) TCGA-B7-A5TI-01 17 39137374 39137374 G A KRT40 Silent p.G239G 0.26 TCGA-B7-A5TI-01 17 39766239 39766239 G T KRT16 Missense_Mutation p.P457H 0.31 deleterious(0.01) possibly_damaging(0.778) TCGA-B7-A5TI-01 17 41056041 41056041 C A G6PC Silent p.T108T 0.29 TCGA-B7-A5TI-01 17 42092185 42092185 G T TMEM101 Silent p.R46R 0.03 TCGA-B7-A5TI-01 17 42168737 42168737 C T HDAC5 Missense_Mutation p.V431M 0.20 deleterious(0.04) probably_damaging(0.994) TCGA-B7-A5TI-01 17 42457070 42457070 T C ITGA2B Missense_Mutation p.H622R 0.33 tolerated(0.3) probably_damaging(0.968) TCGA-B7-A5TI-01 17 45451978 45451978 A - EFCAB13 Frame_Shift_Del p.S342Afs*25 0.19 TCGA-B7-A5TI-01 17 46002386 46002386 G A SP2 Missense_Mutation p.G492R 0.27 tolerated(0.15) benign(0.374) TCGA-B7-A5TI-01 17 47010637 47010637 C T SNF8 Missense_Mutation p.G165D 0.35 tolerated(0.08) benign(0.235) TCGA-B7-A5TI-01 17 47904071 47904071 G A KAT7 Silent p.T548T 0.26 TCGA-B7-A5TI-01 17 48072280 48072280 T C DLX3 Missense_Mutation p.D28G 0.26 deleterious(0.01) probably_damaging(0.945) TCGA-B7-A5TI-01 17 48151625 48151625 G T ITGA3 Missense_Mutation p.D455Y 0.32 deleterious(0) probably_damaging(0.987) TCGA-B7-A5TI-01 17 48273560 48273560 C A COL1A1 Missense_Mutation p.G320C 0.16 unknown(0) TCGA-B7-A5TI-01 17 48432272 48432272 C T XYLT2 Missense_Mutation p.R288W 0.25 deleterious(0) probably_damaging(0.999) TCGA-B7-A5TI-01 17 4877712 4877712 G A CAMTA2 Missense_Mutation p.P685S 0.25 tolerated(0.2) benign(0.201) TCGA-B7-A5TI-01 17 48940335 48940335 T - TOB1 3'UTR 0.32 TCGA-B7-A5TI-01 17 61559975 61559975 G A ACE Missense_Mutation p.V423M 0.27 tolerated(0.15) probably_damaging(0.95) TCGA-B7-A5TI-01 17 61898450 61898450 G A FTSJ3 Nonsense_Mutation p.R638* 0.45 TCGA-B7-A5TI-01 17 62892245 62892245 C T LRRC37A3 Silent p.P377P 0.35 TCGA-B7-A5TI-01 17 66550919 66550919 C A FAM20A Missense_Mutation p.Q213H 0.32 deleterious(0.02) probably_damaging(0.976) TCGA-B7-A5TI-01 17 71202892 71202892 C T COG1 Missense_Mutation p.R889W 0.33 deleterious(0) probably_damaging(0.972) TCGA-B7-A5TI-01 17 71420152 71420152 G A SDK2 Missense_Mutation p.H555Y 0.40 tolerated(1) probably_damaging(0.919) TCGA-B7-A5TI-01 17 7194412 7194414 CTT - YBX2 In_Frame_Del p.K153del 0.29 TCGA-B7-A5TI-01 17 73520535 73520535 G A TSEN54 3'UTR 0.24 TCGA-B7-A5TI-01 17 74469919 74469919 A G RHBDF2 Splice_Site p.X575_splice 0.29 TCGA-B7-A5TI-01 17 74475824 74475824 C T RHBDF2 Missense_Mutation p.S117N 0.22 deleterious(0.02) possibly_damaging(0.69) TCGA-B7-A5TI-01 17 7577085 7577085 C A TP53 Nonsense_Mutation p.E285* 0.22 TCGA-B7-A5TI-01 17 7578475 7578475 G A TP53 Missense_Mutation p.P152L 0.31 tolerated(0.08) probably_damaging(0.91) TCGA-B7-A5TI-01 17 7605866 7605866 G A WRAP53 Missense_Mutation p.R387H 0.14 deleterious(0) probably_damaging(0.978) TCGA-B7-A5TI-01 17 76134468 76134468 C A TMC8 Silent p.P524P 0.09 TCGA-B7-A5TI-01 17 7646415 7646415 G A DNAH2 Missense_Mutation p.R620Q 0.24 benign(0.179) TCGA-B7-A5TI-01 17 77042743 77042743 G A C1QTNF1 Missense_Mutation p.A88T 0.19 tolerated(0.21) benign(0.089) TCGA-B7-A5TI-01 17 78069165 78069165 G A CCDC40 Missense_Mutation p.R979H 0.28 deleterious(0.02) benign(0.298) TCGA-B7-A5TI-01 17 78261820 78261820 G A RNF213 Silent p.T156T 0.40 TCGA-B7-A5TI-01 17 7826831 7826832 AG - KCNAB3 Frame_Shift_Del p.S360Cfs*131 0.18 TCGA-B7-A5TI-01 18 12463380 12463380 C T SPIRE1 Silent p.L536L 0.30 TCGA-B7-A5TI-01 18 18533679 18533679 T - ROCK1 Frame_Shift_Del p.K1307Nfs*3 0.34 TCGA-B7-A5TI-01 18 21033325 21033325 C - RIOK3 5'UTR 0.30 TCGA-B7-A5TI-01 18 29847792 29847792 G A GAREM 3'UTR 0.58 TCGA-B7-A5TI-01 18 44559883 44559883 G A TCEB3B Missense_Mutation p.R585W 0.35 tolerated(1) benign(0) TCGA-B7-A5TI-01 18 47317840 47317840 C G ACAA2 Missense_Mutation p.G295R 0.47 deleterious(0) probably_damaging(1) TCGA-B7-A5TI-01 18 47799244 47799244 C T MBD1 Missense_Mutation p.A556T 0.38 tolerated_low_confidence(0.2) benign(0.011) TCGA-B7-A5TI-01 18 59157710 59157711 - T CDH20 5'UTR 0.33 TCGA-B7-A5TI-01 18 64176381 64176381 A C CDH19 Missense_Mutation p.L560R 0.32 tolerated(0.09) probably_damaging(1) TCGA-B7-A5TI-01 18 6837354 6837354 A - ARHGAP28 Frame_Shift_Del p.K4Rfs*107 0.13 TCGA-B7-A5TI-01 19 1052095 1052095 G T ABCA7 Missense_Mutation p.K1039N 0.32 deleterious(0) possibly_damaging(0.883) TCGA-B7-A5TI-01 19 10753111 10753111 G A SLC44A2 Silent p.T666T 0.34 TCGA-B7-A5TI-01 19 1487275 1487275 G A PCSK4 Silent p.I240I 0.32 TCGA-B7-A5TI-01 19 15281201 15281201 G A NOTCH3 Silent p.D1685D 0.31 TCGA-B7-A5TI-01 19 16515514 16515514 A T EPS15L1 Missense_Mutation p.L438H 0.25 deleterious(0) probably_damaging(0.993) TCGA-B7-A5TI-01 19 17339774 17339774 G T OCEL1 3'UTR 0.33 TCGA-B7-A5TI-01 19 19115267 19115267 G A SUGP2 Missense_Mutation p.P880L 0.34 tolerated(0.28) benign(0.001) TCGA-B7-A5TI-01 19 21720246 21720246 G A ZNF429 Missense_Mutation p.R464Q 0.42 tolerated(1) benign(0.001) TCGA-B7-A5TI-01 19 31025845 31025845 G A ZNF536 Silent p.P754P 0.30 TCGA-B7-A5TI-01 19 33623132 33623132 G A WDR88 Silent p.P19P 0.34 TCGA-B7-A5TI-01 19 34263963 34263963 T C CHST8 Missense_Mutation p.Y424H 0.36 tolerated_low_confidence(0.14) benign(0.302) TCGA-B7-A5TI-01 19 34710756 34710756 T C LSM14A Silent p.F370F 0.22 TCGA-B7-A5TI-01 19 36212538 36212538 G A KMT2B Silent p.P763P 0.16 TCGA-B7-A5TI-01 19 36214871 36214871 C - KMT2B Frame_Shift_Del p.P1101Lfs*81 0.23 TCGA-B7-A5TI-01 19 36583594 36583594 C T WDR62 Silent p.C738C 0.27 TCGA-B7-A5TI-01 19 37619796 37619796 A T ZNF420 Nonsense_Mutation p.R635* 0.29 TCGA-B7-A5TI-01 19 38127190 38127190 A G ZFP30 Silent p.Y84Y 0.38 TCGA-B7-A5TI-01 19 38976509 38976509 G A RYR1 Silent p.T1738T 0.34 TCGA-B7-A5TI-01 19 39330967 39330967 C G HNRNPL Silent p.G334G 0.22 TCGA-B7-A5TI-01 19 40328441 40328441 G A FBL Missense_Mutation p.R198C 0.36 deleterious(0.04) possibly_damaging(0.749) TCGA-B7-A5TI-01 19 42525483 42525483 G A GRIK5 Missense_Mutation p.A614V 0.23 deleterious(0) possibly_damaging(0.876) TCGA-B7-A5TI-01 19 42603720 42603720 C A POU2F2 Missense_Mutation p.A154S 0.34 tolerated(1) benign(0.01) TCGA-B7-A5TI-01 19 42863328 42863328 G A MEGF8 Missense_Mutation p.E1741K 0.24 tolerated(0.11) benign(0.358) TCGA-B7-A5TI-01 19 44103202 44103202 C T ZNF576 Missense_Mutation p.P102L 0.27 tolerated(0.46) benign(0.002) TCGA-B7-A5TI-01 19 44832040 44832040 C T ZNF112 Missense_Mutation p.R763H 0.30 tolerated(0.4) possibly_damaging(0.806) TCGA-B7-A5TI-01 19 45412370 45412370 G C APOE Missense_Mutation p.E273Q 0.21 deleterious(0.04) probably_damaging(0.969) TCGA-B7-A5TI-01 19 45525396 45525396 G A RELB Missense_Mutation p.S197N 0.30 tolerated(0.23) possibly_damaging(0.635) TCGA-B7-A5TI-01 19 45575602 45575602 G A ZNF296 Missense_Mutation p.R229W 0.27 deleterious(0) probably_damaging(0.914) TCGA-B7-A5TI-01 19 48919377 48919377 G A GRIN2D Missense_Mutation p.R567H 0.21 deleterious(0) probably_damaging(0.929) TCGA-B7-A5TI-01 19 49120043 49120043 C T RPL18 Silent p.T79T 0.28 TCGA-B7-A5TI-01 19 49129311 49129311 C - SPHK2 Frame_Shift_Del p.T70Hfs*138 0.20 TCGA-B7-A5TI-01 19 49129386 49129386 C T SPHK2 Missense_Mutation p.P93L 0.37 tolerated(0.47) benign(0.005) TCGA-B7-A5TI-01 19 49253754 49253754 C T FUT1 Missense_Mutation p.S262N 0.38 deleterious(0) probably_damaging(0.991) TCGA-B7-A5TI-01 19 49303320 49303320 C A BCAT2 Missense_Mutation p.R150L 0.27 deleterious(0) benign(0.317) TCGA-B7-A5TI-01 19 49513280 49513280 G A RUVBL2 Missense_Mutation p.R207H 0.30 deleterious(0) probably_damaging(0.997) TCGA-B7-A5TI-01 19 50285894 50285894 G C AP2A1 Missense_Mutation p.C129S 0.26 tolerated(0.22) benign(0.093) TCGA-B7-A5TI-01 19 50550019 50550019 T C ZNF473 Silent p.L773L 0.30 TCGA-B7-A5TI-01 19 51890655 51890655 C T LIM2 Missense_Mutation p.G15R 0.32 deleterious(0) probably_damaging(0.995) TCGA-B7-A5TI-01 19 52131257 52131257 G - SIGLEC5 Frame_Shift_Del p.P276Lfs*4 0.22 TCGA-B7-A5TI-01 19 52216917 52216917 G A HAS1 Silent p.Y500Y 0.42 TCGA-B7-A5TI-01 19 52222464 52222464 C T HAS1 Missense_Mutation p.V233M 0.27 tolerated(0.13) possibly_damaging(0.833) TCGA-B7-A5TI-01 19 52469263 52469263 C T ZNF350 Missense_Mutation p.G148D 0.25 tolerated(0.07) benign(0.01) TCGA-B7-A5TI-01 19 53912710 53912710 G A ZNF765 3'UTR 0.29 TCGA-B7-A5TI-01 19 55221556 55221556 C G AC098784.2 3'Flank 0.24 TCGA-B7-A5TI-01 19 55966445 55966445 G A ISOC2 Missense_Mutation p.R166C 0.26 deleterious(0) probably_damaging(0.988) TCGA-B7-A5TI-01 19 57088424 57088424 A - ZNF470 Frame_Shift_Del p.T211Hfs*5 0.26 TCGA-B7-A5TI-01 19 57876260 57876260 T C TRAPPC2P1 Missense_Mutation p.M20T 0.38 tolerated(0.25) benign(0.007) TCGA-B7-A5TI-01 19 57910377 57910377 T C ZNF548 Missense_Mutation p.M253T 0.25 tolerated(0.41) benign(0) TCGA-B7-A5TI-01 19 58867440 58867440 C T ZNF497 3'UTR 0.33 TCGA-B7-A5TI-01 19 58988844 58988844 C T ZNF446 Missense_Mutation p.R87C 0.30 deleterious(0) probably_damaging(0.93) TCGA-B7-A5TI-01 19 746586 746586 C T PALM Silent p.A312A 0.52 TCGA-B7-A5TI-01 19 8160903 8160903 G T FBN3 Silent p.S1867S 0.46 TCGA-B7-A5TI-01 19 8842179 8842179 C T OR2Z1 Silent p.C263C 0.51 TCGA-B7-A5TI-01 19 9090101 9090101 G A MUC16 Silent p.L572L 0.35 TCGA-B7-A5TI-01 1 104117947 104117947 T A AMY2B Silent p.I327I 0.06 TCGA-B7-A5TI-01 1 109801548 109801548 G A CELSR2 Missense_Mutation p.V1269I 0.24 tolerated(1) benign(0.008) TCGA-B7-A5TI-01 1 110168017 110168017 C T AMPD2 Missense_Mutation p.R116C 0.28 tolerated(0.08) possibly_damaging(0.791) TCGA-B7-A5TI-01 1 110169390 110169390 C T AMPD2 Missense_Mutation p.R246W 0.06 deleterious(0) possibly_damaging(0.852) TCGA-B7-A5TI-01 1 110259861 110259861 G T GSTM5 Intron 0.38 TCGA-B7-A5TI-01 1 111824264 111824264 C T CHIAP2 RNA 0.31 TCGA-B7-A5TI-01 1 112029227 112029227 G A ADORA3 Missense_Mutation p.R285C 0.29 deleterious_low_confidence(0) benign(0.436) TCGA-B7-A5TI-01 1 1120586 1120586 C T TTLL10 Intron 0.32 TCGA-B7-A5TI-01 1 112270003 112270003 C T FAM212B Missense_Mutation p.V161I 0.27 tolerated(0.71) benign(0.068) TCGA-B7-A5TI-01 1 114952868 114952868 G - TRIM33 Frame_Shift_Del p.P711Hfs*7 0.14 TCGA-B7-A5TI-01 1 117122242 117122242 C T IGSF3 Missense_Mutation p.V1056M 0.26 deleterious(0.04) possibly_damaging(0.739) TCGA-B7-A5TI-01 1 12081867 12081867 G A MIIP Silent p.V28V 0.42 TCGA-B7-A5TI-01 1 120927322 120927322 G A FCGR1B Missense_Mutation p.R220C 0.33 tolerated(0.24) benign(0.001) TCGA-B7-A5TI-01 1 1223116 1223116 G A SCNN1D Missense_Mutation p.G488D 0.16 deleterious(0.03) possibly_damaging(0.553) TCGA-B7-A5TI-01 1 1458926 1458926 G A ATAD3A Silent p.A362A 0.21 TCGA-B7-A5TI-01 1 149884987 149884987 G A SV2A Missense_Mutation p.R136W 0.29 deleterious(0.01) unknown(0) TCGA-B7-A5TI-01 1 151280100 151280100 C T PI4KB Missense_Mutation p.V390M 0.39 deleterious(0) probably_damaging(0.939) TCGA-B7-A5TI-01 1 152190972 152190972 C T HRNR Missense_Mutation p.G1045S 0.16 unknown(0) TCGA-B7-A5TI-01 1 153945250 153945252 GAG - CREB3L4 In_Frame_Del p.E193del 0.38 TCGA-B7-A5TI-01 1 154067526 154067526 A - NUP210L Frame_Shift_Del p.L691Wfs*3 0.34 TCGA-B7-A5TI-01 1 155005625 155005625 C T DCST2 Silent p.E128E 0.20 TCGA-B7-A5TI-01 1 155252416 155252416 C T HCN3 Missense_Mutation p.R165C 0.30 deleterious(0) probably_damaging(0.959) TCGA-B7-A5TI-01 1 155891246 155891246 G A KIAA0907 Missense_Mutation p.P396S 0.05 tolerated(0.47) benign(0.06) TCGA-B7-A5TI-01 1 156622647 156622647 C T BCAN Silent p.S635S 0.34 TCGA-B7-A5TI-01 1 159035718 159035718 A C AIM2 Silent p.G266G 0.23 TCGA-B7-A5TI-01 1 161132826 161132826 C A USP21 Silent p.P337P 0.26 TCGA-B7-A5TI-01 1 161594307 161594307 A G FCGR3B Nonstop_Mutation p.*270Rext*21 0.06 TCGA-B7-A5TI-01 1 16461628 16461628 G A EPHA2 Silent p.D495D 0.23 TCGA-B7-A5TI-01 1 169366580 169366580 T - CCDC181 Frame_Shift_Del p.K421Sfs*6 0.33 TCGA-B7-A5TI-01 1 170508683 170508683 A G GORAB Missense_Mutation p.K157E 0.36 tolerated(0.35) benign(0.068) TCGA-B7-A5TI-01 1 172554176 172554176 T C SUCO Missense_Mutation p.V506A 0.22 deleterious(0) possibly_damaging(0.807) TCGA-B7-A5TI-01 1 17401416 17401416 G A PADI2 Missense_Mutation p.S495L 0.26 tolerated(0.07) benign(0.01) TCGA-B7-A5TI-01 1 17431554 17431554 G A PADI2 Missense_Mutation p.A32V 0.34 tolerated(0.07) possibly_damaging(0.888) TCGA-B7-A5TI-01 1 180062780 180062780 C T CEP350 Nonsense_Mutation p.R2514* 0.31 TCGA-B7-A5TI-01 1 182827950 182827950 G A DHX9 Missense_Mutation p.G328D 0.22 tolerated(0.08) probably_damaging(0.953) TCGA-B7-A5TI-01 1 183895409 183895409 A C RGL1 Missense_Mutation p.S799R 0.27 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-B7-A5TI-01 1 186097323 186097323 C T HMCN1 Silent p.D4268D 0.28 TCGA-B7-A5TI-01 1 18704785 18704785 G C IGSF21 Missense_Mutation p.V457L 0.33 tolerated_low_confidence(0.36) benign(0.001) TCGA-B7-A5TI-01 1 19493636 19493636 C T UBR4 Missense_Mutation p.S1330N 0.40 benign(0.116) TCGA-B7-A5TI-01 1 19644132 19644132 G A PQLC2 5'UTR 0.12 TCGA-B7-A5TI-01 1 196879461 196879461 G C CFHR4 Missense_Mutation p.E283Q 0.18 tolerated(0.06) benign(0.088) TCGA-B7-A5TI-01 1 204393843 204393863 GAGGCCAGAATCACCTGGACC - PIK3C2B 3'UTR 0.26 TCGA-B7-A5TI-01 1 20499363 20499363 G A PLA2G2C Silent p.Y69Y 0.31 TCGA-B7-A5TI-01 1 205308508 205308508 C T KLHDC8A Missense_Mutation p.A191T 0.34 deleterious(0.03) possibly_damaging(0.792) TCGA-B7-A5TI-01 1 206821042 206821042 G T DYRK3 Nonsense_Mutation p.E167* 0.35 TCGA-B7-A5TI-01 1 206821148 206821148 G A DYRK3 Missense_Mutation p.R202Q 0.30 deleterious(0.02) probably_damaging(0.978) TCGA-B7-A5TI-01 1 214638008 214638008 G T PTPN14 Missense_Mutation p.L47M 0.30 deleterious(0) probably_damaging(1) TCGA-B7-A5TI-01 1 220174484 220174484 T - EPRS Frame_Shift_Del p.N726Mfs*15 0.27 TCGA-B7-A5TI-01 1 226127114 226127114 G A LEFTY2 Silent p.A228A 0.24 TCGA-B7-A5TI-01 1 227842446 227842446 G A ZNF678 Nonsense_Mutation p.W165* 0.26 TCGA-B7-A5TI-01 1 233388168 233388168 C T PCNXL2 Missense_Mutation p.S687N 0.06 tolerated(0.13) probably_damaging(0.922) TCGA-B7-A5TI-01 1 233394561 233394561 G T PCNXL2 Silent p.S349S 0.30 TCGA-B7-A5TI-01 1 235971962 235971962 A G LYST Missense_Mutation p.I719T 0.42 tolerated(0.37) benign(0.009) TCGA-B7-A5TI-01 1 23763504 23763504 A T ASAP3 Missense_Mutation p.L459H 0.13 deleterious(0) probably_damaging(1) TCGA-B7-A5TI-01 1 237753973 237753973 C T RYR2 Missense_Mutation p.P1281S 0.27 benign(0.085) TCGA-B7-A5TI-01 1 240635619 240635619 A G FMN2 Intron 0.26 TCGA-B7-A5TI-01 1 24078022 24078024 GAA - TCEB3 In_Frame_Del p.K338del 0.34 TCGA-B7-A5TI-01 1 248801857 248801857 G A OR2T35 Missense_Mutation p.R235C 0.19 deleterious(0.01) benign(0.007) TCGA-B7-A5TI-01 1 249142781 249142781 C T ZNF672 Silent p.L436L 0.35 TCGA-B7-A5TI-01 1 24996760 24996760 C T SRRM1 Missense_Mutation p.P785L 0.32 unknown(0) TCGA-B7-A5TI-01 1 27099980 27099981 AG - ARID1A Frame_Shift_Del p.R1287Sfs*10 0.24 TCGA-B7-A5TI-01 1 27100175 27100176 - C ARID1A Frame_Shift_Ins p.Q1327Afs*11 0.32 TCGA-B7-A5TI-01 1 27106260 27106260 C T ARID1A Silent p.D1957D 0.23 TCGA-B7-A5TI-01 1 36028192 36028192 C - NCDN Frame_Shift_Del p.T450Pfs*22 0.35 TCGA-B7-A5TI-01 1 3647593 3647593 C T TP73 Missense_Mutation p.P483L 0.24 tolerated(0.11) possibly_damaging(0.85) TCGA-B7-A5TI-01 1 36788573 36788573 G A EVA1B Silent p.R22R 0.28 TCGA-B7-A5TI-01 1 40313667 40313667 G A TRIT1 Missense_Mutation p.S269L 0.29 tolerated(0.22) benign(0.009) TCGA-B7-A5TI-01 1 40701810 40701810 G A RLF Missense_Mutation p.C479Y 0.29 deleterious(0) probably_damaging(0.999) TCGA-B7-A5TI-01 1 40961369 40961369 G A ZFP69 Missense_Mutation p.G407R 0.30 deleterious(0.01) probably_damaging(1) TCGA-B7-A5TI-01 1 41475868 41475868 C A CTPS1 Missense_Mutation p.P576H 0.31 deleterious(0.01) probably_damaging(0.943) TCGA-B7-A5TI-01 1 43296312 43296312 G A ERMAP Intron 0.33 TCGA-B7-A5TI-01 1 44680668 44680668 G A DMAP1 Intron 0.67 TCGA-B7-A5TI-01 1 45965309 45965309 C A CCDC163P 5'UTR 0.31 TCGA-B7-A5TI-01 1 46032346 46032346 G A AKR1A1 Missense_Mutation p.V64M 0.28 deleterious(0.05) benign(0.033) TCGA-B7-A5TI-01 1 46500777 46500777 G A MAST2 Missense_Mutation p.G1479D 0.27 deleterious_low_confidence(0.03) probably_damaging(1) TCGA-B7-A5TI-01 1 46871370 46871370 C - FAAH Frame_Shift_Del p.L232Wfs*3 0.26 TCGA-B7-A5TI-01 1 48821392 48821392 G A SPATA6 Missense_Mutation p.R382W 0.20 deleterious(0) probably_damaging(0.995) TCGA-B7-A5TI-01 1 51753742 51753742 C T TTC39A 3'UTR 0.67 TCGA-B7-A5TI-01 1 52896774 52896774 A C ZCCHC11 Missense_Mutation p.V1541G 0.33 tolerated_low_confidence(0.11) possibly_damaging(0.743) TCGA-B7-A5TI-01 1 61921058 61921058 C T NFIA 3'UTR 0.29 TCGA-B7-A5TI-01 1 62916397 62916397 T C USP1 Silent p.S701S 0.35 TCGA-B7-A5TI-01 1 70446077 70446077 C G LRRC7 Missense_Mutation p.Q205E 0.17 deleterious(0.05) benign(0.09) TCGA-B7-A5TI-01 1 71477853 71477853 T C PTGER3 Intron 0.33 TCGA-B7-A5TI-01 1 7886760 7886760 A G PER3 Silent p.S718S 0.24 TCGA-B7-A5TI-01 1 82431771 82431771 G T LPHN2 Nonsense_Mutation p.G666* 0.05 TCGA-B7-A5TI-01 1 86921043 86921043 C - CLCA2 Frame_Shift_Del p.N891Ifs*13 0.23 TCGA-B7-A5TI-01 1 91182241 91182241 G A BARHL2 Missense_Mutation p.P171L 0.21 deleterious(0.01) unknown(0) TCGA-B7-A5TI-01 1 93581092 93581092 C A MTF2 Silent p.P183P 0.07 TCGA-B7-A5TI-01 1 93671100 93671103 CTAA - CCDC18 Frame_Shift_Del p.N333Vfs*22 0.23 TCGA-B7-A5TI-01 1 93826280 93826280 T G DR1 3'UTR 0.27 TCGA-B7-A5TI-01 20 23345525 23345525 A G GZF1 Missense_Mutation p.T169A 0.32 tolerated(0.78) benign(0) TCGA-B7-A5TI-01 20 25011398 25011398 C T ACSS1 Missense_Mutation p.D210N 0.33 deleterious(0.02) possibly_damaging(0.558) TCGA-B7-A5TI-01 20 2840721 2840721 G A VPS16 Missense_Mutation p.R55Q 0.35 tolerated(0.3) benign(0.031) TCGA-B7-A5TI-01 20 30253768 30253768 A T BCL2L1 Missense_Mutation p.L229H 0.38 deleterious(0) probably_damaging(0.936) TCGA-B7-A5TI-01 20 30729460 30729460 C T TM9SF4 Silent p.Y130Y 0.05 TCGA-B7-A5TI-01 20 30898021 30898021 C A KIF3B Silent p.I147I 0.23 TCGA-B7-A5TI-01 20 34067191 34067191 C T CEP250 Missense_Mutation p.R744W 0.25 probably_damaging(0.999) TCGA-B7-A5TI-01 20 35064720 35064720 A T DLGAP4 Missense_Mutation p.Q403L 0.34 deleterious(0.04) benign(0.009) TCGA-B7-A5TI-01 20 3650014 3650014 G T ADAM33 Missense_Mutation p.P779H 0.33 tolerated(0.26) possibly_damaging(0.512) TCGA-B7-A5TI-01 20 37400378 37400378 G C ACTR5 Missense_Mutation p.K581N 0.23 deleterious(0.02) possibly_damaging(0.697) TCGA-B7-A5TI-01 20 44680472 44680472 C T SLC12A5 Silent p.R803R 0.24 TCGA-B7-A5TI-01 20 48524790 48524790 A T SPATA2 Missense_Mutation p.S80T 0.38 tolerated(0.15) benign(0.029) TCGA-B7-A5TI-01 20 50400947 50400947 C T SALL4 Missense_Mutation p.V1007I 0.30 tolerated(0.96) benign(0.007) TCGA-B7-A5TI-01 20 56078494 56078494 T C CTCFL Missense_Mutation p.D613G 0.32 tolerated(0.12) benign(0.001) TCGA-B7-A5TI-01 20 57245616 57245616 T C STX16 Missense_Mutation p.V202A 0.05 tolerated(0.14) benign(0.001) TCGA-B7-A5TI-01 20 57484601 57484601 G A GNAS Missense_Mutation p.D872N 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-B7-A5TI-01 20 57576633 57576633 T C CTSZ Missense_Mutation p.D125G 0.38 deleterious(0.01) probably_damaging(0.909) TCGA-B7-A5TI-01 20 60512051 60512051 G T CDH4 3'UTR 0.26 TCGA-B7-A5TI-01 20 60776091 60776091 G A MTG2 Silent p.A393A 0.36 TCGA-B7-A5TI-01 20 60971440 60971440 G A CABLES2 Missense_Mutation p.P153L 0.27 deleterious(0.04) probably_damaging(0.992) TCGA-B7-A5TI-01 20 61512758 61512758 G A DIDO1 Missense_Mutation p.S1517L 0.29 possibly_damaging(0.536) TCGA-B7-A5TI-01 20 62550843 62550843 G A DNAJC5 Intron 0.07 TCGA-B7-A5TI-01 20 826060 826060 T - FAM110A Frame_Shift_Del p.F206Lfs*49 0.27 TCGA-B7-A5TI-01 20 826169 826169 C T FAM110A Missense_Mutation p.P241L 0.23 tolerated(0.41) benign(0.007) TCGA-B7-A5TI-01 21 31864179 31864179 G A KRTAP19-3 Missense_Mutation p.R33C 0.28 deleterious_low_confidence(0.05) unknown(0) TCGA-B7-A5TI-01 21 35821745 35821745 A T KCNE1 Missense_Mutation p.L63Q 0.36 deleterious(0) probably_damaging(0.991) TCGA-B7-A5TI-01 21 38302609 38302609 C T HLCS Missense_Mutation p.S374N 0.36 tolerated(0.23) benign(0.011) TCGA-B7-A5TI-01 21 41450680 41450680 G A DSCAM Missense_Mutation p.R1549W 0.26 deleterious(0) probably_damaging(0.998) TCGA-B7-A5TI-01 21 43161513 43161513 G A RIPK4 Missense_Mutation p.R614C 0.26 deleterious(0) probably_damaging(0.999) TCGA-B7-A5TI-01 21 43241431 43241431 G A PRDM15 Silent p.N1050N 0.29 TCGA-B7-A5TI-01 21 44949714 44949714 A G HSF2BP Missense_Mutation p.S309P 0.35 tolerated(0.06) benign(0.029) TCGA-B7-A5TI-01 21 45545974 45545974 C T PWP2 Missense_Mutation p.A683V 0.32 tolerated(0.16) benign(0.002) TCGA-B7-A5TI-01 21 45557091 45557091 G A C21orf33 Missense_Mutation p.R114H 0.04 deleterious(0.05) probably_damaging(0.997) TCGA-B7-A5TI-01 21 45738450 45738450 G A PFKL Missense_Mutation p.R345Q 0.30 deleterious(0.02) benign(0.114) TCGA-B7-A5TI-01 21 46047349 46047349 G A KRTAP10-9 Silent p.P87P 0.33 TCGA-B7-A5TI-01 21 47635654 47635654 G A LSS Silent p.N279N 0.17 TCGA-B7-A5TI-01 21 47684048 47684048 G A MCM3AP Silent p.Y1106Y 0.39 TCGA-B7-A5TI-01 22 17589622 17589622 A G IL17RA Missense_Mutation p.S505G 0.20 tolerated(0.19) benign(0.401) TCGA-B7-A5TI-01 22 19484942 19484942 C T CDC45 Silent p.L241L 0.14 TCGA-B7-A5TI-01 22 19808208 19808208 G A GNB1L Missense_Mutation p.T56M 0.35 deleterious(0) possibly_damaging(0.698) TCGA-B7-A5TI-01 22 20024463 20024463 G T TANGO2 Intron 0.25 TCGA-B7-A5TI-01 22 20130522 20130522 C - ZDHHC8 Frame_Shift_Del p.T459Rfs*177 0.31 TCGA-B7-A5TI-01 22 21083618 21083618 G A PI4KA Silent p.A1555A 0.31 TCGA-B7-A5TI-01 22 21377450 21377450 A - P2RX6 Frame_Shift_Del p.N202Tfs*63 0.34 TCGA-B7-A5TI-01 22 24581723 24581723 G A SUSD2 Missense_Mutation p.G389S 0.24 tolerated(0.2) probably_damaging(0.992) TCGA-B7-A5TI-01 22 29446517 29446517 A C ZNRF3 Missense_Mutation p.E783A 0.22 deleterious_low_confidence(0) possibly_damaging(0.643) TCGA-B7-A5TI-01 22 32234822 32234822 T C DEPDC5 Missense_Mutation p.Y827H 0.34 tolerated(0.13) probably_damaging(0.929) TCGA-B7-A5TI-01 22 33245493 33245493 C T TIMP3 Missense_Mutation p.T59M 0.29 tolerated(0.19) probably_damaging(0.992) TCGA-B7-A5TI-01 22 40816542 40816542 G - MKL1 Frame_Shift_Del p.P307Qfs*30 0.32 TCGA-B7-A5TI-01 22 41573805 41573805 A G EP300 Silent p.Q2030Q 0.38 TCGA-B7-A5TI-01 22 43575870 43575870 G T TTLL12 Missense_Mutation p.P228H 0.33 deleterious(0) probably_damaging(0.998) TCGA-B7-A5TI-01 22 45970491 45970491 G A FBLN1 Missense_Mutation p.V600I 0.29 tolerated(0.38) benign(0.015) TCGA-B7-A5TI-01 22 50617590 50617590 G - PANX2 Frame_Shift_Del p.G641Afs*32 0.30 TCGA-B7-A5TI-01 22 51220660 51220660 G A RABL2B Silent p.N21N 0.20 TCGA-B7-A5TI-01 2 101565928 101565928 G A NPAS2 Missense_Mutation p.R195H 0.07 deleterious(0.01) probably_damaging(0.964) TCGA-B7-A5TI-01 2 101594242 101594242 C T NPAS2 Missense_Mutation p.T488M 0.27 tolerated(0.11) benign(0.191) TCGA-B7-A5TI-01 2 10904508 10904508 C A ATP6V1C2 Missense_Mutation p.P112H 0.30 deleterious(0) probably_damaging(0.992) TCGA-B7-A5TI-01 2 111907683 111907683 C T BCL2L11 Missense_Mutation p.R153W 0.20 deleterious(0) probably_damaging(0.999) TCGA-B7-A5TI-01 2 118743575 118743575 C T CCDC93 Missense_Mutation p.R197Q 0.30 tolerated(0.21) benign(0.098) TCGA-B7-A5TI-01 2 128396787 128396787 G - LIMS2 3'UTR 0.27 TCGA-B7-A5TI-01 2 131799021 131799021 G A ARHGEF4 Silent p.T441T 0.38 TCGA-B7-A5TI-01 2 138169326 138169326 G A THSD7B Missense_Mutation p.R948Q 0.27 tolerated(0.49) benign(0.417) TCGA-B7-A5TI-01 2 148683686 148683686 A - ACVR2A Frame_Shift_Del p.K437Rfs*5 0.54 TCGA-B7-A5TI-01 2 149227050 149227050 A G MBD5 Missense_Mutation p.D513G 0.04 deleterious(0) possibly_damaging(0.728) TCGA-B7-A5TI-01 2 158636922 158636922 G A ACVR1 Silent p.S86S 0.37 TCGA-B7-A5TI-01 2 162820693 162820693 G T SLC4A10 Missense_Mutation p.D971Y 0.50 deleterious(0) probably_damaging(1) TCGA-B7-A5TI-01 2 163374664 163374664 T A KCNH7 Missense_Mutation p.K156N 0.27 deleterious(0.05) benign(0.25) TCGA-B7-A5TI-01 2 164468132 164468132 T - FIGN Frame_Shift_Del p.K70Nfs*29 0.17 TCGA-B7-A5TI-01 2 168099432 168099432 A - XIRP2 Frame_Shift_Del p.N512Tfs*2 0.17 TCGA-B7-A5TI-01 2 170665008 170665008 A - SSB Frame_Shift_Del p.N193Mfs*13 0.36 TCGA-B7-A5TI-01 2 173333883 173333883 C T ITGA6 Missense_Mutation p.H140Y 0.38 tolerated(1) benign(0.002) TCGA-B7-A5TI-01 2 175337871 175337871 C T GPR155 Missense_Mutation p.A228T 0.28 deleterious(0.05) possibly_damaging(0.862) TCGA-B7-A5TI-01 2 176965452 176965452 C T HOXD12 Silent p.R259R 0.29 TCGA-B7-A5TI-01 2 179411328 179411328 G A TTN Silent p.Y31609Y 0.22 TCGA-B7-A5TI-01 2 179414981 179414981 A G TTN Silent p.F30528F 0.24 TCGA-B7-A5TI-01 2 179641889 179641889 A G TTN Missense_Mutation p.Y1601H 0.25 TCGA-B7-A5TI-01 2 191785880 191785880 T - GLS Frame_Shift_Del p.L362* 0.31 TCGA-B7-A5TI-01 2 1926404 1926404 C T MYT1L Missense_Mutation p.M379I 0.16 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-B7-A5TI-01 2 197654051 197654051 C A GTF3C3 Missense_Mutation p.R257L 0.35 tolerated(0.07) possibly_damaging(0.879) TCGA-B7-A5TI-01 2 197860118 197860118 T - ANKRD44 Frame_Shift_Del p.N914Ifs*11 0.26 TCGA-B7-A5TI-01 2 198950817 198950817 G A PLCL1 Missense_Mutation p.R859H 0.25 deleterious(0) probably_damaging(0.953) TCGA-B7-A5TI-01 2 202547563 202547563 G A MPP4 Silent p.I217I 0.23 TCGA-B7-A5TI-01 2 203420622 203420623 - C BMPR2 Frame_Shift_Ins p.K747Qfs*11 0.31 TCGA-B7-A5TI-01 2 206166298 206166298 A - PARD3B Frame_Shift_Del p.T775Rfs*13 0.31 TCGA-B7-A5TI-01 2 209198209 209198209 G A PIKFYVE Silent p.A1378A 0.24 TCGA-B7-A5TI-01 2 209315475 209315475 G A PTH2R Silent p.G285G 0.21 TCGA-B7-A5TI-01 2 20939809 20939809 G A C2orf43 Silent p.L209L 0.19 TCGA-B7-A5TI-01 2 213921701 213921701 T A IKZF2 Missense_Mutation p.S88C 0.25 tolerated(0.06) benign(0.287) TCGA-B7-A5TI-01 2 219128008 219128008 C T GPBAR1 Silent p.R187R 0.34 TCGA-B7-A5TI-01 2 220045847 220045847 G A FAM134A Missense_Mutation p.R235H 0.28 tolerated(0.06) probably_damaging(0.996) TCGA-B7-A5TI-01 2 220421447 220421447 T C OBSL1 Splice_Site p.X1356_splice 0.37 TCGA-B7-A5TI-01 2 231281034 231281034 T C SP100 Missense_Mutation p.L8P 0.22 deleterious_low_confidence(0) possibly_damaging(0.883) TCGA-B7-A5TI-01 2 231406715 231406715 C T SP100 Missense_Mutation p.R838C 0.36 tolerated(0.09) possibly_damaging(0.835) TCGA-B7-A5TI-01 2 233899616 233899616 G A NEU2 Missense_Mutation p.S331N 0.32 deleterious(0.03) benign(0.153) TCGA-B7-A5TI-01 2 234750582 234750582 T C HJURP Missense_Mutation p.I282V 0.36 tolerated(0.37) benign(0.045) TCGA-B7-A5TI-01 2 242170211 242170211 C T HDLBP Missense_Mutation p.R1146H 0.23 tolerated(0.11) benign(0.364) TCGA-B7-A5TI-01 2 242194810 242194810 C T HDLBP Silent p.A353A 0.25 TCGA-B7-A5TI-01 2 26534086 26534086 C T GPR113 Missense_Mutation p.R837Q 0.27 tolerated(0.64) benign(0.001) TCGA-B7-A5TI-01 2 26950760 26950760 C T KCNK3 Missense_Mutation p.T170M 0.23 deleterious(0) probably_damaging(1) TCGA-B7-A5TI-01 2 27263029 27263029 C T TMEM214 Missense_Mutation p.A585V 0.25 tolerated(0.13) probably_damaging(0.984) TCGA-B7-A5TI-01 2 27565052 27565052 C T GTF3C2 Silent p.L206L 0.24 TCGA-B7-A5TI-01 2 27803854 27803854 G T C2orf16 Missense_Mutation p.G1472V 0.08 tolerated(0.28) benign(0.004) TCGA-B7-A5TI-01 2 27997345 27997345 C A MRPL33 Silent p.T32T 0.29 TCGA-B7-A5TI-01 2 31178823 31178823 T C GALNT14 Missense_Mutation p.I168V 0.30 tolerated(0.36) benign(0.005) TCGA-B7-A5TI-01 2 37293013 37293013 G A HEATR5B Silent p.G406G 0.26 TCGA-B7-A5TI-01 2 42281252 42281252 G A PKDCC Missense_Mutation p.R280H 0.22 tolerated(0.05) probably_damaging(0.99) TCGA-B7-A5TI-01 2 44021651 44021651 A G DYNC2LI1 Missense_Mutation p.T126A 0.25 deleterious(0.01) possibly_damaging(0.874) TCGA-B7-A5TI-01 2 47136315 47136315 A G MCFD2 Intron 0.29 TCGA-B7-A5TI-01 2 51255231 51255231 G A NRXN1 Missense_Mutation p.R61C 0.18 deleterious(0.01) possibly_damaging(0.764) TCGA-B7-A5TI-01 2 54125109 54125109 A T PSME4 Silent p.I1168I 0.30 TCGA-B7-A5TI-01 2 63283098 63283098 C T OTX1 Missense_Mutation p.P238S 0.35 tolerated(0.77) unknown(0) TCGA-B7-A5TI-01 2 65217262 65217262 C A SLC1A4 Missense_Mutation p.P162H 0.21 deleterious(0.03) possibly_damaging(0.8) TCGA-B7-A5TI-01 2 71871159 71871159 G A DYSF Missense_Mutation p.G1531D 0.20 deleterious(0.05) benign(0.267) TCGA-B7-A5TI-01 2 73659348 73659348 A G ALMS1 Missense_Mutation p.H454R 0.32 benign(0.348) TCGA-B7-A5TI-01 2 73676814 73676814 G A ALMS1 Missense_Mutation p.E1053K 0.28 possibly_damaging(0.646) TCGA-B7-A5TI-01 2 85826129 85826129 T C TMEM150A 3'UTR 0.37 TCGA-B7-A5TI-01 2 85857947 85857947 G A USP39 Missense_Mutation p.R276H 0.26 deleterious(0) probably_damaging(0.998) TCGA-B7-A5TI-01 2 96809601 96809601 C T DUSP2 Silent p.G302G 0.35 TCGA-B7-A5TI-01 2 96919694 96919694 G A TMEM127 Missense_Mutation p.A190V 0.08 deleterious(0.01) probably_damaging(0.986) TCGA-B7-A5TI-01 2 96953611 96953611 C T SNRNP200 Missense_Mutation p.D1119N 0.24 tolerated(0.09) benign(0.126) TCGA-B7-A5TI-01 2 98355873 98355873 A C ZAP70 Missense_Mutation p.Q591P 0.22 tolerated(0.28) benign(0.282) TCGA-B7-A5TI-01 2 98809407 98809407 C T VWA3B Missense_Mutation p.H505Y 0.24 tolerated(1) benign(0) TCGA-B7-A5TI-01 2 99977757 99977757 G A EIF5B Silent p.V131V 0.28 TCGA-B7-A5TI-01 3 10280433 10280433 T C IRAK2 Missense_Mutation p.V492A 0.27 tolerated(0.24) benign(0.029) TCGA-B7-A5TI-01 3 111342620 111342620 A G CD96 Silent p.S416S 0.30 TCGA-B7-A5TI-01 3 119211230 119211230 C T POGLUT1 Missense_Mutation p.T375M 0.27 deleterious(0.04) possibly_damaging(0.806) TCGA-B7-A5TI-01 3 119445101 119445101 G A MAATS1 Missense_Mutation p.A256T 0.25 deleterious(0.01) benign(0.003) TCGA-B7-A5TI-01 3 121417435 121417435 C T GOLGB1 Silent p.A645A 0.21 TCGA-B7-A5TI-01 3 122632189 122632189 G A SEMA5B Missense_Mutation p.T842M 0.31 deleterious(0.03) probably_damaging(0.969) TCGA-B7-A5TI-01 3 12393087 12393087 C A PPARG 5'UTR 0.33 TCGA-B7-A5TI-01 3 125271337 125271338 - T OSBPL11 Frame_Shift_Ins p.P448Tfs*27 0.26 TCGA-B7-A5TI-01 3 125877315 125877315 G A ALDH1L1 Missense_Mutation p.R109W 0.43 deleterious_low_confidence(0) possibly_damaging(0.59) TCGA-B7-A5TI-01 3 136060320 136060320 T C STAG1 Missense_Mutation p.N1174D 0.24 tolerated_low_confidence(0.14) benign(0.066) TCGA-B7-A5TI-01 3 136701098 136701098 G A IL20RB Silent p.T104T 0.52 TCGA-B7-A5TI-01 3 141164024 141164024 A - ZBTB38 Frame_Shift_Del p.M934* 0.31 TCGA-B7-A5TI-01 3 141497169 141497169 G A GRK7 Missense_Mutation p.A15T 0.48 tolerated(0.11) benign(0.103) TCGA-B7-A5TI-01 3 142168422 142168422 A C ATR Missense_Mutation p.I2595S 0.39 deleterious(0) probably_damaging(0.998) TCGA-B7-A5TI-01 3 151012734 151012734 A G GPR87 Silent p.H100H 0.41 TCGA-B7-A5TI-01 3 151046375 151046376 - T P2RY13 Frame_Shift_Ins p.P157Tfs*55 0.20 TCGA-B7-A5TI-01 3 151067943 151067943 A G MED12L Missense_Mutation p.T748A 0.03 deleterious(0.04) benign(0.097) TCGA-B7-A5TI-01 3 15736300 15736300 T G ANKRD28 Silent p.T539T 0.30 TCGA-B7-A5TI-01 3 161147202 161147202 G A RP11-3P17.4 RNA 0.20 TCGA-B7-A5TI-01 3 180334681 180334681 G A CCDC39 Missense_Mutation p.A780V 0.29 tolerated(0.08) benign(0.013) TCGA-B7-A5TI-01 3 183013086 183013086 A G MCF2L2 Splice_Site p.X559_splice 0.35 TCGA-B7-A5TI-01 3 183756363 183756363 G A HTR3D Silent p.A362A 0.28 TCGA-B7-A5TI-01 3 18391064 18391064 C T SATB1 Silent p.T662T 0.28 TCGA-B7-A5TI-01 3 184062389 184062389 C A FAM131A Nonsense_Mutation p.C244* 0.07 TCGA-B7-A5TI-01 3 185214766 185214766 C T TMEM41A Silent p.S41S 0.24 TCGA-B7-A5TI-01 3 185237031 185237032 CT - LIPH Frame_Shift_Del p.S262Lfs*9 0.38 TCGA-B7-A5TI-01 3 197762864 197762864 C A LMLN Missense_Mutation p.P643H 0.47 deleterious(0.01) probably_damaging(1) TCGA-B7-A5TI-01 3 24009413 24009413 A T NR1D2 Missense_Mutation p.D481V 0.35 deleterious(0) possibly_damaging(0.716) TCGA-B7-A5TI-01 3 30885902 30885902 A T GADL1 Silent p.V236V 0.04 TCGA-B7-A5TI-01 3 36896820 36896820 C - TRANK1 Frame_Shift_Del p.D1421Tfs*7 0.39 TCGA-B7-A5TI-01 3 37048546 37048546 C T MLH1 Nonsense_Mutation p.Q149* 0.51 TCGA-B7-A5TI-01 3 38181942 38181942 A G MYD88 Missense_Mutation p.Q189R 0.26 tolerated(0.2) benign(0.1) TCGA-B7-A5TI-01 3 42728038 42728038 C A KLHL40 Missense_Mutation p.L310M 0.06 tolerated(0.09) benign(0.064) TCGA-B7-A5TI-01 3 44683553 44683553 G A ZNF197 Missense_Mutation p.G311R 0.38 tolerated(0.29) benign(0.001) TCGA-B7-A5TI-01 3 46245531 46245531 C T CCR1 Missense_Mutation p.D92N 0.42 tolerated(0.2) benign(0.015) TCGA-B7-A5TI-01 3 48916807 48916807 A T SLC25A20 Missense_Mutation p.I134N 0.39 deleterious(0) probably_damaging(0.936) TCGA-B7-A5TI-01 3 49210244 49210244 C - KLHDC8B Frame_Shift_Del p.M17Cfs*59 0.38 TCGA-B7-A5TI-01 3 49294240 49294240 G A CCDC36 Missense_Mutation p.R437Q 0.43 tolerated(0.36) benign(0.007) TCGA-B7-A5TI-01 3 49899733 49899733 A G CAMKV Missense_Mutation p.I30T 0.11 deleterious(0) benign(0.328) TCGA-B7-A5TI-01 3 49928002 49928002 T C MST1R Silent p.Q1242Q 0.10 TCGA-B7-A5TI-01 3 50153502 50153502 G A RBM5 Intron 0.50 TCGA-B7-A5TI-01 3 50324164 50324164 G A LSMEM2 Missense_Mutation p.V78I 0.45 tolerated(0.5) benign(0.013) TCGA-B7-A5TI-01 3 52712520 52712520 G A PBRM1 Nonsense_Mutation p.R78* 0.31 TCGA-B7-A5TI-01 3 52850920 52850920 C T ITIH4 Silent p.T817T 0.38 TCGA-B7-A5TI-01 3 56330130 56330130 G A ERC2 Missense_Mutation p.R331W 0.42 deleterious(0) probably_damaging(0.997) TCGA-B7-A5TI-01 3 66433624 66433624 G A LRIG1 Missense_Mutation p.A758V 0.33 deleterious(0.01) benign(0.386) TCGA-B7-A5TI-01 3 8671396 8671396 T A SSUH2 Missense_Mutation p.H181L 0.24 tolerated(0.28) benign(0.009) TCGA-B7-A5TI-01 4 100534216 100534216 T C MTTP Silent p.D712D 0.25 TCGA-B7-A5TI-01 4 100815146 100815146 C T LAMTOR3 5'UTR 0.24 TCGA-B7-A5TI-01 4 103911030 103911030 T C SLC9B1 Missense_Mutation p.I46M 0.22 tolerated(0.18) benign(0.163) TCGA-B7-A5TI-01 4 107845239 107845239 G A DKK2 Missense_Mutation p.R218C 0.25 deleterious(0) probably_damaging(0.99) TCGA-B7-A5TI-01 4 110412492 110412492 G A SEC24B Missense_Mutation p.S392N 0.06 deleterious_low_confidence(0.01) possibly_damaging(0.83) TCGA-B7-A5TI-01 4 113539372 113539373 AG - C4orf21 Frame_Shift_Del p.L609Afs*6 0.19 TCGA-B7-A5TI-01 4 122261678 122261678 C T QRFPR Missense_Mutation p.R143K 0.40 deleterious(0) probably_damaging(0.993) TCGA-B7-A5TI-01 4 122770017 122770017 C T BBS7 Missense_Mutation p.V306M 0.19 deleterious(0) possibly_damaging(0.66) TCGA-B7-A5TI-01 4 126371835 126371835 G C FAT4 Missense_Mutation p.D3222H 0.39 probably_damaging(1) TCGA-B7-A5TI-01 4 128665869 128665869 G A SLC25A31 Missense_Mutation p.R92Q 0.46 deleterious(0.03) possibly_damaging(0.682) TCGA-B7-A5TI-01 4 13338379 13338379 G A HSP90AB2P RNA 0.47 TCGA-B7-A5TI-01 4 146686300 146686300 A - ZNF827 Frame_Shift_Del p.C1024Afs*33 0.33 TCGA-B7-A5TI-01 4 154216879 154216879 G A TRIM2 Missense_Mutation p.G401R 0.39 deleterious(0) possibly_damaging(0.906) TCGA-B7-A5TI-01 4 156775279 156775279 T C ASIC5 Missense_Mutation p.N179D 0.50 tolerated(0.36) benign(0.042) TCGA-B7-A5TI-01 4 170641253 170641253 A - CLCN3 3'UTR 0.31 TCGA-B7-A5TI-01 4 184572391 184572391 G A RWDD4 Silent p.N65N 0.43 TCGA-B7-A5TI-01 4 36230286 36230286 C T ARAP2 Missense_Mutation p.V275I 0.44 tolerated_low_confidence(0.34) benign(0.164) TCGA-B7-A5TI-01 4 44719213 44719213 C T GNPDA2 Missense_Mutation p.G109E 0.18 deleterious_low_confidence(0.02) possibly_damaging(0.684) TCGA-B7-A5TI-01 4 48994107 48994107 G T CWH43 Missense_Mutation p.D171Y 0.19 tolerated(0.12) possibly_damaging(0.735) TCGA-B7-A5TI-01 4 57843622 57843622 G A NOA1 Missense_Mutation p.H44Y 0.46 tolerated_low_confidence(0.41) benign(0) TCGA-B7-A5TI-01 4 6615986 6615986 G A MAN2B2 Missense_Mutation p.V869M 0.59 deleterious(0.03) possibly_damaging(0.537) TCGA-B7-A5TI-01 4 68784830 68784830 G A TMPRSS11A Silent p.Y274Y 0.30 TCGA-B7-A5TI-01 4 70620844 70620844 A C SULT1B1 Missense_Mutation p.I31S 0.22 deleterious(0) possibly_damaging(0.847) TCGA-B7-A5TI-01 4 72306384 72306384 G A SLC4A4 Missense_Mutation p.V287M 0.29 deleterious(0) probably_damaging(0.984) TCGA-B7-A5TI-01 4 86898779 86898779 T C ARHGAP24 Missense_Mutation p.L288S 0.44 deleterious(0) probably_damaging(0.999) TCGA-B7-A5TI-01 4 94006349 94006349 G C GRID2 Missense_Mutation p.V150L 0.33 tolerated(0.08) probably_damaging(0.987) TCGA-B7-A5TI-01 4 95508246 95508247 - C PDLIM5 Intron 0.29 TCGA-B7-A5TI-01 5 10239184 10239184 G A FAM173B Missense_Mutation p.R101C 0.04 deleterious(0) probably_damaging(0.999) TCGA-B7-A5TI-01 5 118969897 118969897 T C FAM170A Silent p.L152L 0.24 TCGA-B7-A5TI-01 5 128302015 128302015 G T SLC27A6 Missense_Mutation p.S62I 0.30 tolerated(0.08) benign(0.001) TCGA-B7-A5TI-01 5 128448802 128448802 A - ISOC1 3'UTR 0.32 TCGA-B7-A5TI-01 5 131658040 131658040 G A SLC22A4 Silent p.P272P 0.05 TCGA-B7-A5TI-01 5 131822646 131822646 C A IRF1 Nonsense_Mutation p.E122* 0.04 TCGA-B7-A5TI-01 5 132015557 132015557 G T IL4 Missense_Mutation p.R112M 0.16 deleterious(0) probably_damaging(0.981) TCGA-B7-A5TI-01 5 136403476 136403476 C T SPOCK1 Missense_Mutation p.A173T 0.20 tolerated(0.59) benign(0.001) TCGA-B7-A5TI-01 5 140188814 140188814 G A PCDHA4 Missense_Mutation p.R681Q 0.25 tolerated_low_confidence(0.09) benign(0.1) TCGA-B7-A5TI-01 5 140594245 140594245 C T PCDHB13 Missense_Mutation p.R184C 0.23 deleterious_low_confidence(0.01) benign(0.065) TCGA-B7-A5TI-01 5 140731410 140731410 T C PCDHGB1 Missense_Mutation p.L528P 0.24 deleterious(0) probably_damaging(0.992) TCGA-B7-A5TI-01 5 140768213 140768213 C T PCDHGB4 Silent p.N254N 0.24 TCGA-B7-A5TI-01 5 140811628 140811628 G A PCDHGA12 Silent p.T434T 0.24 TCGA-B7-A5TI-01 5 149262996 149262996 C T PDE6A Missense_Mutation p.V711I 0.31 tolerated(0.46) benign(0.011) TCGA-B7-A5TI-01 5 149932951 149932951 G A NDST1 3'UTR 0.26 TCGA-B7-A5TI-01 5 158601021 158601021 C T RNF145 Missense_Mutation p.R286H 0.29 tolerated(0.35) benign(0.07) TCGA-B7-A5TI-01 5 15937247 15937247 C T FBXL7 Silent p.R476R 0.43 TCGA-B7-A5TI-01 5 162898454 162898454 A G HMMR Missense_Mutation p.Q212R 0.12 tolerated(0.07) benign(0.318) TCGA-B7-A5TI-01 5 170736525 170736525 G A TLX3 Silent p.P52P 0.20 TCGA-B7-A5TI-01 5 170883626 170883626 C T FGF18 Silent p.S147S 0.29 TCGA-B7-A5TI-01 5 175763760 175763760 C T SIMC1 Missense_Mutation p.R303C 0.28 deleterious(0) probably_damaging(0.961) TCGA-B7-A5TI-01 5 176084013 176084013 C - TSPAN17 Intron 0.23 TCGA-B7-A5TI-01 5 176522335 176522335 C T FGFR4 Silent p.N508N 0.12 TCGA-B7-A5TI-01 5 176733233 176733233 G A MXD3 3'Flank 0.33 TCGA-B7-A5TI-01 5 178770985 178770985 C T ADAMTS2 Missense_Mutation p.G106D 0.12 tolerated(0.09) benign(0.006) TCGA-B7-A5TI-01 5 179976951 179976951 G A CNOT6 Missense_Mutation p.A45T 0.36 tolerated(0.34) benign(0) TCGA-B7-A5TI-01 5 24511445 24511445 A G CDH10 Silent p.T331T 0.23 TCGA-B7-A5TI-01 5 35921206 35921206 C T CAPSL Missense_Mutation p.R6H 0.28 deleterious(0) probably_damaging(0.96) TCGA-B7-A5TI-01 5 3600335 3600335 G A IRX1 Missense_Mutation p.G425R 0.38 tolerated(0.18) benign(0.064) TCGA-B7-A5TI-01 5 38418193 38418193 G A EGFLAM Missense_Mutation p.R507Q 0.27 tolerated(0.07) benign(0.27) TCGA-B7-A5TI-01 5 41018864 41018864 C T MROH2B Missense_Mutation p.A868T 0.23 deleterious(0) possibly_damaging(0.606) TCGA-B7-A5TI-01 5 41070957 41070957 C G MROH2B 5'UTR 0.22 TCGA-B7-A5TI-01 5 64847400 64847400 T - CENPK Frame_Shift_Del p.T78Hfs*7 0.34 TCGA-B7-A5TI-01 5 64900775 64900775 A G TRIM23 Missense_Mutation p.I381T 0.26 tolerated(0.4) benign(0.004) TCGA-B7-A5TI-01 5 68830666 68830666 C T OCLN Missense_Mutation p.P346L 0.17 deleterious(0.02) benign(0.017) TCGA-B7-A5TI-01 5 70779723 70779723 C T BDP1 Nonsense_Mutation p.Q357* 0.18 TCGA-B7-A5TI-01 5 72469397 72469397 G A TMEM174 Silent p.P109P 0.26 TCGA-B7-A5TI-01 5 7709437 7709437 G A ADCY2 Silent p.K505K 0.23 TCGA-B7-A5TI-01 5 80388670 80388670 C T RASGRF2 Missense_Mutation p.R481C 0.26 deleterious(0) probably_damaging(0.973) TCGA-B7-A5TI-01 5 80513174 80513175 - T RASGRF2 Frame_Shift_Ins p.C1146Lfs*2 0.08 TCGA-B7-A5TI-01 5 80932421 80932421 T - SSBP2 Frame_Shift_Del p.N51Tfs*54 0.21 TCGA-B7-A5TI-01 5 82815520 82815520 C T VCAN Silent p.G465G 0.17 TCGA-B7-A5TI-01 5 98235188 98235188 T - CHD1 Frame_Shift_Del p.R361Dfs*3 0.17 TCGA-B7-A5TI-01 6 100841490 100841490 C T SIM1 Silent p.T481T 0.28 TCGA-B7-A5TI-01 6 10730983 10730983 G A TMEM14C 3'UTR 0.19 TCGA-B7-A5TI-01 6 116442007 116442007 C T COL10A1 Silent p.V424V 0.52 TCGA-B7-A5TI-01 6 125402642 125402642 C T RNF217 Missense_Mutation p.A223V 0.59 tolerated(0.12) possibly_damaging(0.874) TCGA-B7-A5TI-01 6 133091309 133091309 C T SLC18B1 3'UTR 0.42 TCGA-B7-A5TI-01 6 138657551 138657551 C T KIAA1244 Silent p.T2154T 0.49 TCGA-B7-A5TI-01 6 152651515 152651515 T G SYNE1 Silent p.R4769R 0.58 TCGA-B7-A5TI-01 6 158359772 158359772 G A SNX9 Silent p.A547A 0.40 TCGA-B7-A5TI-01 6 160448255 160448255 C - IGF2R Frame_Shift_Del p.G231Afs*7 0.31 TCGA-B7-A5TI-01 6 161501972 161501972 G A MAP3K4 Silent p.S719S 0.48 TCGA-B7-A5TI-01 6 16327822 16327823 - G ATXN1 Frame_Shift_Ins p.P241Tfs*70 0.53 TCGA-B7-A5TI-01 6 170594673 170594674 - C DLL1 Frame_Shift_Ins p.L283Pfs*14 0.43 TCGA-B7-A5TI-01 6 26189010 26189011 AA - HIST1H4D Frame_Shift_Del p.Y99Wfs*? 0.22 TCGA-B7-A5TI-01 6 29364694 29364694 C T OR12D2 Missense_Mutation p.T73M 0.54 deleterious(0) benign(0.38) TCGA-B7-A5TI-01 6 30864571 30864571 C - DDR1 Frame_Shift_Del p.R602Efs*51 0.43 TCGA-B7-A5TI-01 6 30867091 30867091 C T DDR1 3'UTR 0.57 TCGA-B7-A5TI-01 6 30889902 30889902 C A VARS2 Missense_Mutation p.L636I 0.67 deleterious(0.01) possibly_damaging(0.831) TCGA-B7-A5TI-01 6 31743197 31743198 TG - VWA7 Nonsense_Mutation p.Y174* 0.25 TCGA-B7-A5TI-01 6 31913271 31913271 G A C2 3'UTR 0.40 TCGA-B7-A5TI-01 6 31975751 31975751 C T AL645922.1 5'Flank 0.68 TCGA-B7-A5TI-01 6 33178990 33178990 G - RING1 Frame_Shift_Del p.E173Kfs*14 0.27 TCGA-B7-A5TI-01 6 33235075 33235075 G A VPS52 Missense_Mutation p.R339C 0.67 deleterious(0) probably_damaging(0.953) TCGA-B7-A5TI-01 6 34385236 34385237 - T RPS10 3'UTR 0.62 TCGA-B7-A5TI-01 6 36298206 36298206 C T C6orf222 Missense_Mutation p.E88K 0.27 deleterious(0) possibly_damaging(0.81) TCGA-B7-A5TI-01 6 38718259 38718259 G A DNAH8 Missense_Mutation p.R217H 0.56 benign(0.032) TCGA-B7-A5TI-01 6 39282777 39282777 C A KCNK16 3'UTR 0.57 TCGA-B7-A5TI-01 6 39895280 39895280 A G MOCS1 Missense_Mutation p.V13A 0.77 tolerated_low_confidence(0.86) benign(0.002) TCGA-B7-A5TI-01 6 56417104 56417104 C A DST Nonsense_Mutation p.E2873* 0.17 TCGA-B7-A5TI-01 6 56471473 56471473 C T DST Intron 0.17 TCGA-B7-A5TI-01 6 74079007 74079007 C T OOEP Missense_Mutation p.G98R 0.48 deleterious(0) probably_damaging(0.97) TCGA-B7-A5TI-01 6 74440071 74440071 C A CD109 Missense_Mutation p.P94H 0.47 tolerated(0.06) probably_damaging(0.99) TCGA-B7-A5TI-01 6 7570791 7570791 G A DSP Missense_Mutation p.A566T 0.56 probably_damaging(0.958) TCGA-B7-A5TI-01 6 82936963 82936963 G T IBTK Silent p.T200T 0.23 TCGA-B7-A5TI-01 6 86324913 86324913 C T SYNCRIP Missense_Mutation p.R478H 0.20 tolerated(0.52) unknown(0) TCGA-B7-A5TI-01 6 89864474 89864474 A - PM20D2 Frame_Shift_Del p.N257Mfs*4 0.15 TCGA-B7-A5TI-01 6 90453364 90453364 G A MDN1 Silent p.C1416C 0.28 TCGA-B7-A5TI-01 6 90572780 90572780 T C CASP8AP2 RNA 0.27 TCGA-B7-A5TI-01 6 96052733 96052733 C T MANEA Nonsense_Mutation p.R229* 0.27 TCGA-B7-A5TI-01 7 100198606 100198606 C T FBXO24 3'UTR 0.43 TCGA-B7-A5TI-01 7 100686732 100686732 G A MUC17 Missense_Mutation p.S4012N 0.17 benign(0.182) TCGA-B7-A5TI-01 7 100844061 100844061 G A MOGAT3 Silent p.G25G 0.22 TCGA-B7-A5TI-01 7 101256825 101256825 G - MYL10 Frame_Shift_Del p.P204Qfs*42 0.33 TCGA-B7-A5TI-01 7 102100207 102100207 G A ALKBH4 Silent p.A55A 0.21 TCGA-B7-A5TI-01 7 116544380 116544380 A G CAPZA2 Silent p.S123S 0.18 TCGA-B7-A5TI-01 7 117351448 117351448 A - CTTNBP2 3'UTR 0.46 TCGA-B7-A5TI-01 7 127668603 127668603 T - LRRC4 3'UTR 0.45 TCGA-B7-A5TI-01 7 135122963 135122963 T A CNOT4 Silent p.R39R 0.23 TCGA-B7-A5TI-01 7 141752697 141752697 C T MGAM Silent p.S1024S 0.33 TCGA-B7-A5TI-01 7 143047660 143047660 G A CLCN1 Splice_Site p.X837_splice 0.19 TCGA-B7-A5TI-01 7 143053772 143053772 G A FAM131B Silent p.C318C 0.25 TCGA-B7-A5TI-01 7 149129533 149129533 C T ZNF777 Silent p.T610T 0.04 TCGA-B7-A5TI-01 7 149461880 149461880 C T ZNF467 Missense_Mutation p.A571T 0.27 tolerated(0.33) benign(0.001) TCGA-B7-A5TI-01 7 150069130 150069130 C A REPIN1 Missense_Mutation p.P324H 0.27 deleterious(0.01) probably_damaging(1) TCGA-B7-A5TI-01 7 150648860 150648860 G A KCNH2 Missense_Mutation p.R541C 0.29 deleterious(0) probably_damaging(1) TCGA-B7-A5TI-01 7 21934307 21934308 - A DNAH11 Frame_Shift_Ins p.N4282Kfs*4 0.34 TCGA-B7-A5TI-01 7 26232144 26232144 G A HNRNPA2B1 Nonsense_Mutation p.R352* 0.25 TCGA-B7-A5TI-01 7 27147495 27147495 G - HOXA3 3'UTR 0.28 TCGA-B7-A5TI-01 7 27182949 27182949 G A HOXA5 Missense_Mutation p.T93M 0.41 tolerated(0.09) benign(0.295) TCGA-B7-A5TI-01 7 33134893 33134893 G A RP9 Missense_Mutation p.R207W 0.25 deleterious_low_confidence(0) unknown(0) TCGA-B7-A5TI-01 7 37956154 37956154 G A SFRP4 5'UTR 0.40 TCGA-B7-A5TI-01 7 37988640 37988640 A G EPDR1 Silent p.S156S 0.28 TCGA-B7-A5TI-01 7 43485063 43485063 C T HECW1 Silent p.N764N 0.26 TCGA-B7-A5TI-01 7 44186107 44186107 C T GCK Missense_Mutation p.R326H 0.33 tolerated(0.27) benign(0.219) TCGA-B7-A5TI-01 7 50778644 50778644 G A GRB10 Intron 0.25 TCGA-B7-A5TI-01 7 5353119 5353119 C T TNRC18 Missense_Mutation p.G2468D 0.28 probably_damaging(0.931) TCGA-B7-A5TI-01 7 55266466 55266466 G T EGFR Missense_Mutation p.A920S 0.28 deleterious(0.02) probably_damaging(0.998) TCGA-B7-A5TI-01 7 62752449 62752449 T C ZNF733P RNA 0.29 TCGA-B7-A5TI-01 7 6476105 6476105 C T DAGLB Missense_Mutation p.A103T 0.05 tolerated(0.21) benign(0.059) TCGA-B7-A5TI-01 7 6791127 6791127 A - RSPH10B2 5'Flank 0.23 TCGA-B7-A5TI-01 7 72178745 72178745 C T TYW1B Missense_Mutation p.V28I 0.21 tolerated(0.11) probably_damaging(0.917) TCGA-B7-A5TI-01 7 74237272 74237272 G A GTF2IRD2 Missense_Mutation p.S141L 0.33 deleterious_low_confidence(0.01) benign(0.08) TCGA-B7-A5TI-01 7 75657995 75657995 C T STYXL1 Missense_Mutation p.E44K 0.28 deleterious(0.01) possibly_damaging(0.539) TCGA-B7-A5TI-01 7 7612322 7612322 T C MIOS Silent p.Y72Y 0.28 TCGA-B7-A5TI-01 7 79840378 79840378 T G GNAI1 Missense_Mutation p.S228R 0.29 deleterious(0) probably_damaging(0.996) TCGA-B7-A5TI-01 7 82996915 82996915 G A SEMA3E Missense_Mutation p.T772M 0.35 deleterious(0.02) benign(0.344) TCGA-B7-A5TI-01 7 86394804 86394804 G A GRM3 Missense_Mutation p.A115T 0.27 deleterious(0.02) possibly_damaging(0.616) TCGA-B7-A5TI-01 7 87175277 87175277 C T ABCB1 Missense_Mutation p.V597I 0.22 tolerated(0.21) benign(0.002) TCGA-B7-A5TI-01 7 91713962 91713962 A G AKAP9 Silent p.S2885S 0.09 TCGA-B7-A5TI-01 7 92733460 92733460 C T SAMD9 Missense_Mutation p.A651T 0.17 tolerated(0.14) benign(0.077) TCGA-B7-A5TI-01 7 92987643 92987643 G A CCDC132 Silent p.K930K 0.40 TCGA-B7-A5TI-01 7 98550909 98550909 C G TRRAP Silent p.R1854R 0.13 TCGA-B7-A5TI-01 7 99359780 99359780 T - CYP3A4 Frame_Shift_Del p.D380Mfs*15 0.25 TCGA-B7-A5TI-01 7 99702674 99702674 G A AP4M1 Missense_Mutation p.R227H 0.17 deleterious(0) benign(0.27) TCGA-B7-A5TI-01 7 99711885 99711885 G A TAF6 Missense_Mutation p.P20L 0.50 tolerated_low_confidence(0.14) benign(0) TCGA-B7-A5TI-01 8 10396039 10396039 C T PRSS55 Silent p.Y265Y 0.38 TCGA-B7-A5TI-01 8 105361203 105361204 - A DCSTAMP Frame_Shift_Ins p.Y144Ifs*3 0.18 TCGA-B7-A5TI-01 8 105502938 105502938 T - LRP12 Frame_Shift_Del p.N848Tfs*39 0.29 TCGA-B7-A5TI-01 8 117950628 117950628 C T AARD Missense_Mutation p.A49V 0.34 tolerated(0.33) possibly_damaging(0.866) TCGA-B7-A5TI-01 8 131073267 131073267 G A ASAP1 Missense_Mutation p.P917L 0.27 tolerated(0.11) benign(0.109) TCGA-B7-A5TI-01 8 134145764 134145764 C - TG Frame_Shift_Del p.W2685Gfs*26 0.22 TCGA-B7-A5TI-01 8 140630386 140630386 A G KCNK9 3'UTR 0.43 TCGA-B7-A5TI-01 8 143746052 143746052 C T JRK RNA 0.16 TCGA-B7-A5TI-01 8 144874281 144874281 C T SCRIB Missense_Mutation p.A1513T 0.26 probably_damaging(0.999) TCGA-B7-A5TI-01 8 144886953 144886953 C T SCRIB Missense_Mutation p.V932I 0.18 probably_damaging(0.924) TCGA-B7-A5TI-01 8 145107481 145107481 G A OPLAH Silent p.R1058R 0.13 TCGA-B7-A5TI-01 8 145268112 145268112 C T MROH1 Intron 0.27 TCGA-B7-A5TI-01 8 145626385 145626385 G A CPSF1 Missense_Mutation p.R158W 0.32 deleterious(0.03) possibly_damaging(0.849) TCGA-B7-A5TI-01 8 15601051 15601051 C T TUSC3 Silent p.A289A 0.38 TCGA-B7-A5TI-01 8 17412506 17412506 G T SLC7A2 Intron 0.39 TCGA-B7-A5TI-01 8 19263481 19263481 C T CSGALNACT1 Missense_Mutation p.R470Q 0.49 tolerated(0.29) probably_damaging(0.924) TCGA-B7-A5TI-01 8 19277874 19277874 G A CSGALNACT1 Missense_Mutation p.T370M 0.42 deleterious(0.03) possibly_damaging(0.507) TCGA-B7-A5TI-01 8 19805825 19805825 A G LPL Missense_Mutation p.T75A 0.44 deleterious(0) benign(0.314) TCGA-B7-A5TI-01 8 22412434 22412434 C T SORBS3 Missense_Mutation p.A54V 0.45 tolerated(0.06) possibly_damaging(0.791) TCGA-B7-A5TI-01 8 25346199 25346199 G A CDCA2 Silent p.K555K 0.55 TCGA-B7-A5TI-01 8 27146715 27146715 G A TRIM35 Missense_Mutation p.R290C 0.68 deleterious(0.01) possibly_damaging(0.708) TCGA-B7-A5TI-01 8 29921374 29921374 G A TMEM66 3'UTR 0.14 TCGA-B7-A5TI-01 8 36671887 36671887 G T KCNU1 Missense_Mutation p.G299W 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-B7-A5TI-01 8 37690604 37690604 G - GPR124 Frame_Shift_Del p.G393Vfs*40 0.23 TCGA-B7-A5TI-01 8 38287319 38287319 C T FGFR1 Missense_Mutation p.R113H 0.31 tolerated(0.29) probably_damaging(0.972) TCGA-B7-A5TI-01 8 39468186 39468186 G T ADAM18 Missense_Mutation p.W161C 0.41 deleterious(0.05) possibly_damaging(0.784) TCGA-B7-A5TI-01 8 42260930 42260930 G A VDAC3 Missense_Mutation p.R219H 0.27 tolerated(0.14) benign(0.03) TCGA-B7-A5TI-01 8 51705315 51705315 T - SNTG1 Frame_Shift_Del p.L495* 0.23 TCGA-B7-A5TI-01 8 52322074 52322074 C T PXDNL Missense_Mutation p.A704T 0.30 deleterious(0) probably_damaging(0.989) TCGA-B7-A5TI-01 8 53852937 53852937 C T NPBWR1 Missense_Mutation p.A157V 0.14 tolerated(0.4) benign(0.041) TCGA-B7-A5TI-01 8 70585156 70585156 G T SLCO5A1 Missense_Mutation p.S832Y 0.19 deleterious_low_confidence(0) benign(0.406) TCGA-B7-A5TI-01 8 71053526 71053526 C T NCOA2 Missense_Mutation p.R974Q 0.31 tolerated(0.14) benign(0.004) TCGA-B7-A5TI-01 8 73942616 73942616 A G TERF1 Silent p.T311T 0.25 TCGA-B7-A5TI-01 8 74894519 74894519 G A TMEM70 3'UTR 0.23 TCGA-B7-A5TI-01 8 77764051 77764051 G T ZFHX4 Missense_Mutation p.V1632L 0.25 benign(0) TCGA-B7-A5TI-01 8 90949303 90949303 C T NBN Missense_Mutation p.V729I 0.24 tolerated(0.42) possibly_damaging(0.627) TCGA-B7-A5TI-01 8 99961360 99961360 T C OSR2 Silent p.N60N 0.27 TCGA-B7-A5TI-01 9 100125964 100125964 C T CCDC180 Intron 0.58 TCGA-B7-A5TI-01 9 100364941 100364941 G A TSTD2 Missense_Mutation p.A454V 0.49 deleterious(0.04) probably_damaging(0.971) TCGA-B7-A5TI-01 9 103204536 103204536 C A MSANTD3 Missense_Mutation p.L106I 0.30 tolerated(0.53) benign(0) TCGA-B7-A5TI-01 9 104357008 104357008 C T PPP3R2 Missense_Mutation p.G69S 0.22 deleterious(0.04) benign(0.441) TCGA-B7-A5TI-01 9 104432577 104432577 T G GRIN3A Missense_Mutation p.K706T 0.46 deleterious(0.02) benign(0.438) TCGA-B7-A5TI-01 9 107568537 107568537 C - ABCA1 Frame_Shift_Del p.L1484Cfs*17 0.34 TCGA-B7-A5TI-01 9 109690583 109690583 G A ZNF462 Missense_Mutation p.A1464T 0.17 probably_damaging(0.993) TCGA-B7-A5TI-01 9 109691364 109691364 C T ZNF462 Missense_Mutation p.A1724V 0.37 probably_damaging(0.99) TCGA-B7-A5TI-01 9 127549519 127549519 T C OLFML2A Splice_Site p.X118_splice 0.27 TCGA-B7-A5TI-01 9 130653086 130653086 G A ST6GALNAC6 Silent p.T178T 0.31 TCGA-B7-A5TI-01 9 135202646 135202646 A G SETX Silent p.L1447L 0.27 TCGA-B7-A5TI-01 9 138585512 138585512 A G SOHLH1 Silent p.D365D 0.36 TCGA-B7-A5TI-01 9 139412252 139412252 C T NOTCH1 Missense_Mutation p.A465T 0.29 deleterious(0) probably_damaging(0.957) TCGA-B7-A5TI-01 9 21970956 21970956 C T CDKN2A Silent p.A134A 0.37 TCGA-B7-A5TI-01 9 33364823 33364823 A G NFX1 Intron 0.57 TCGA-B7-A5TI-01 9 33467733 33467733 C - NOL6 Frame_Shift_Del p.A520Lfs*3 0.30 TCGA-B7-A5TI-01 9 34371043 34371043 G A KIAA1161 Silent p.I599I 0.21 TCGA-B7-A5TI-01 9 34401028 34401028 G - FAM219A Frame_Shift_Del p.K165Sfs*3 0.28 TCGA-B7-A5TI-01 9 34512145 34512147 CTT - DNAI1 In_Frame_Del p.F452del 0.29 TCGA-B7-A5TI-01 9 35660375 35660375 G A ARHGEF39 3'UTR 0.31 TCGA-B7-A5TI-01 9 35661172 35661172 T A CCDC107 Missense_Mutation p.S280R 0.20 tolerated_low_confidence(0.07) benign(0.027) TCGA-B7-A5TI-01 9 35676313 35676313 G A CA9 Missense_Mutation p.S256N 0.27 tolerated(0.48) benign(0.028) TCGA-B7-A5TI-01 9 36148589 36148589 G A GLIPR2 Silent p.P56P 0.29 TCGA-B7-A5TI-01 9 72067121 72067121 T C APBA1 Missense_Mutation p.K629E 0.27 tolerated(0.14) possibly_damaging(0.767) TCGA-B7-A5TI-01 9 79009081 79009081 G A RFK Missense_Mutation p.H3Y 0.15 tolerated(0.63) benign(0.001) TCGA-B7-A5TI-01 9 84530710 84530710 G T SPATA31D5P RNA 0.24 TCGA-B7-A5TI-01 9 84608215 84608215 C A SPATA31D1 Missense_Mutation p.L944I 0.16 tolerated(0.18) benign(0.045) TCGA-B7-A5TI-01 9 86294790 86294790 A G UBQLN1 Missense_Mutation p.L204P 0.29 deleterious(0.01) probably_damaging(0.991) TCGA-B7-A5TI-01 9 86616512 86616512 A - RMI1 Frame_Shift_Del p.V206Yfs*5 0.27 TCGA-B7-A5TI-01 9 90585494 90585494 G A CDK20 Silent p.G184G 0.32 TCGA-B7-A5TI-01 9 96070720 96070720 G A WNK2 Missense_Mutation p.D2161N 0.30 unknown(0) TCGA-B7-A5TI-01 9 98691145 98691145 A C ERCC6L2 Missense_Mutation p.M595L 0.45 tolerated(0.61) benign(0.009) TCGA-B7-A5TI-01 9 99266039 99266039 C T CDC14B Missense_Mutation p.R498H 0.21 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-B7-A5TI-01 9 99285623 99285623 C T CDC14B Missense_Mutation p.A389T 0.20 tolerated(0.11) benign(0.043) TCGA-B7-A5TI-01 X 103216804 103216804 C T TMSB15B 5'Flank 0.39 TCGA-B7-A5TI-01 X 107310301 107310301 G A VSIG1 Missense_Mutation p.D153N 0.07 deleterious(0) benign(0.344) TCGA-B7-A5TI-01 X 119680426 119680426 G A CUL4B Silent p.C292C 0.44 TCGA-B7-A5TI-01 X 129148971 129148971 C - BCORL1 Frame_Shift_Del p.R743Afs*40 0.43 TCGA-B7-A5TI-01 X 135431523 135431523 C A GPR112 Silent p.P1886P 0.07 TCGA-B7-A5TI-01 X 13785383 13785383 G C OFD1 Missense_Mutation p.E913Q 0.35 deleterious(0.03) possibly_damaging(0.607) TCGA-B7-A5TI-01 X 151935781 151935781 G A MAGEA3 Missense_Mutation p.P129L 0.57 tolerated(0.17) benign(0.08) TCGA-B7-A5TI-01 X 152128370 152128370 A G ZNF185 Missense_Mutation p.S544G 0.58 tolerated(0.06) benign(0.127) TCGA-B7-A5TI-01 X 1522323 1522323 C T ASMTL Missense_Mutation p.A569T 0.20 tolerated(0.51) benign(0.022) TCGA-B7-A5TI-01 X 1720221 1720221 C T AKAP17A Missense_Mutation p.R608W 0.30 deleterious_low_confidence(0) unknown(0) TCGA-B7-A5TI-01 X 19017206 19017206 A - GPR64 Frame_Shift_Del p.L841Yfs*4 0.43 TCGA-B7-A5TI-01 X 24089745 24089745 C T EIF2S3 Silent p.V361V 0.54 TCGA-B7-A5TI-01 X 27997641 27997641 T C DCAF8L1 3'UTR 0.39 TCGA-B7-A5TI-01 X 306400 306400 G A PPP2R3B Missense_Mutation p.A296V 0.43 deleterious(0.04) possibly_damaging(0.83) TCGA-B7-A5TI-01 X 39933723 39933723 G A BCOR Silent p.G292G 0.62 TCGA-B7-A5TI-01 X 54949723 54949723 G A TRO Missense_Mutation p.R253Q 0.47 tolerated(0.24) unknown(0) TCGA-B7-A5TI-01 X 70824237 70824237 T C ACRC Silent p.A370A 0.57 TCGA-B7-A5TI-01 Y 6115677 6115677 T C TSPY2 Silent p.N213N 0.19 TCGA-B7-A5TJ-01 10 105992026 105992026 G A WDR96 5'UTR 0.46 TCGA-B7-A5TJ-01 10 106960888 106960888 G T SORCS3 Missense_Mutation p.C713F 0.09 deleterious(0) probably_damaging(0.996) TCGA-B7-A5TJ-01 10 117061390 117061390 G A ATRNL1 Silent p.P885P 0.09 TCGA-B7-A5TJ-01 10 129905471 129905471 C T MKI67 Missense_Mutation p.V1545I 0.04 tolerated(0.17) benign(0.288) TCGA-B7-A5TJ-01 10 13900896 13900896 C T FRMD4A Missense_Mutation p.R21Q 0.23 tolerated(0.21) benign(0.273) TCGA-B7-A5TJ-01 10 25887644 25887644 C G GPR158 Missense_Mutation p.S1030C 0.06 tolerated(0.05) probably_damaging(0.971) TCGA-B7-A5TJ-01 10 25887851 25887851 C G GPR158 Missense_Mutation p.A1099G 0.05 tolerated(0.51) benign(0.001) TCGA-B7-A5TJ-01 10 46999168 46999168 C A GPRIN2 Silent p.G96G 0.08 TCGA-B7-A5TJ-01 10 70045124 70045124 C T PBLD Silent p.L245L 0.22 TCGA-B7-A5TJ-01 10 72360130 72360130 G A PRF1 Missense_Mutation p.R177C 0.31 deleterious(0.02) possibly_damaging(0.907) TCGA-B7-A5TJ-01 10 86198417 86198417 C G CCSER2 Missense_Mutation p.T673S 0.20 tolerated(0.25) benign(0.228) TCGA-B7-A5TJ-01 10 91066831 91066831 T C IFIT2 Missense_Mutation p.L373P 0.34 tolerated(0.09) probably_damaging(0.994) TCGA-B7-A5TJ-01 10 91477407 91477407 C T KIF20B Missense_Mutation p.T400I 0.18 deleterious(0.03) probably_damaging(0.996) TCGA-B7-A5TJ-01 11 113860480 113860480 G A HTR3A Missense_Mutation p.A516T 0.76 deleterious(0.03) possibly_damaging(0.629) TCGA-B7-A5TJ-01 11 118343828 118343828 C T KMT2A Nonsense_Mutation p.R652* 0.16 TCGA-B7-A5TJ-01 11 118374702 118374702 C T KMT2A Nonsense_Mutation p.R2699* 0.04 TCGA-B7-A5TJ-01 11 120298810 120298810 C T ARHGEF12 Missense_Mutation p.R147C 0.16 deleterious(0) probably_damaging(0.996) TCGA-B7-A5TJ-01 11 121016571 121016571 G A TECTA Missense_Mutation p.R1284H 0.35 tolerated(0.15) benign(0.003) TCGA-B7-A5TJ-01 11 124615536 124615536 C T NRGN Silent p.R51R 0.14 TCGA-B7-A5TJ-01 11 124829726 124829726 T C CCDC15 Missense_Mutation p.S115P 0.18 deleterious(0.01) probably_damaging(0.918) TCGA-B7-A5TJ-01 11 125765595 125765595 T G PUS3 Missense_Mutation p.E156D 0.77 tolerated(0.45) benign(0.009) TCGA-B7-A5TJ-01 11 17793306 17793306 C T KCNC1 Missense_Mutation p.T222M 0.20 deleterious(0.01) probably_damaging(0.969) TCGA-B7-A5TJ-01 11 17981026 17981026 T A SERGEF Silent p.G334G 0.11 TCGA-B7-A5TJ-01 11 18159251 18159251 G A MRGPRX3 Missense_Mutation p.A168T 0.66 tolerated(0.34) benign(0.065) TCGA-B7-A5TJ-01 11 46408062 46408062 C T CHRM4 Missense_Mutation p.V16M 0.24 tolerated(0.16) benign(0.015) TCGA-B7-A5TJ-01 11 47261735 47261735 C T ACP2 Missense_Mutation p.V402I 0.20 tolerated(0.22) benign(0.013) TCGA-B7-A5TJ-01 11 48510551 48510551 C A OR4A47 Silent p.I69I 0.27 TCGA-B7-A5TJ-01 11 498508 498508 C T RNH1 Missense_Mutation p.R302Q 0.05 tolerated(0.7) benign(0.008) TCGA-B7-A5TJ-01 11 5153681 5153681 A G OR52A5 Silent p.F64F 0.83 TCGA-B7-A5TJ-01 11 55038035 55038035 T G TRIM48 3'UTR 0.70 TCGA-B7-A5TJ-01 11 57971241 57971241 G A OR1S2 Missense_Mutation p.A138V 0.20 deleterious(0.01) benign(0.053) TCGA-B7-A5TJ-01 11 60701099 60701099 G A TMEM132A Missense_Mutation p.R482Q 0.30 deleterious(0.04) probably_damaging(0.995) TCGA-B7-A5TJ-01 11 60975078 60975078 C T PGA3 Silent p.D149D 0.27 TCGA-B7-A5TJ-01 11 62284937 62284937 C T AHNAK Missense_Mutation p.S5651N 0.71 probably_damaging(0.977) TCGA-B7-A5TJ-01 11 6292299 6292299 C T CCKBR Silent p.S290S 0.27 TCGA-B7-A5TJ-01 11 65810849 65810849 G A GAL3ST3 Missense_Mutation p.P142L 0.32 deleterious(0) probably_damaging(0.999) TCGA-B7-A5TJ-01 11 67017572 67017572 G T KDM2A Nonsense_Mutation p.E691* 0.26 TCGA-B7-A5TJ-01 11 67068830 67068830 G T ANKRD13D Missense_Mutation p.V437L 0.08 tolerated(0.15) possibly_damaging(0.451) TCGA-B7-A5TJ-01 11 70049581 70049581 G T FADD Missense_Mutation p.V6L 0.20 tolerated(0.11) benign(0.07) TCGA-B7-A5TJ-01 11 75905828 75905828 G A WNT11 Missense_Mutation p.A127V 0.71 deleterious(0.01) probably_damaging(0.996) TCGA-B7-A5TJ-01 11 92531514 92531514 A G FAT3 Missense_Mutation p.S1779G 0.09 probably_damaging(0.969) TCGA-B7-A5TJ-01 11 93836122 93836122 G A HEPHL1 Missense_Mutation p.G873D 0.71 deleterious(0) probably_damaging(1) TCGA-B7-A5TJ-01 11 94211984 94211984 C T MRE11A Missense_Mutation p.G154E 0.10 deleterious(0) probably_damaging(1) TCGA-B7-A5TJ-01 12 109605781 109605781 C T ACACB Silent p.N289N 0.06 TCGA-B7-A5TJ-01 12 117718637 117718637 C T NOS1 Missense_Mutation p.G473S 0.12 tolerated(0.14) benign(0.003) TCGA-B7-A5TJ-01 12 120156131 120156131 G A CIT Missense_Mutation p.R1363W 0.08 deleterious(0.01) possibly_damaging(0.895) TCGA-B7-A5TJ-01 12 25398285 25398285 C T KRAS Missense_Mutation p.G12S 0.47 deleterious(0.03) possibly_damaging(0.644) TCGA-B7-A5TJ-01 12 26551882 26551882 G A ITPR2 Silent p.I2541I 0.58 TCGA-B7-A5TJ-01 12 32908208 32908208 G A YARS2 Missense_Mutation p.R201W 0.18 deleterious(0) probably_damaging(0.964) TCGA-B7-A5TJ-01 12 46243418 46243418 C T ARID2 Nonsense_Mutation p.Q591* 0.05 TCGA-B7-A5TJ-01 12 5021746 5021746 C A KCNA1 Missense_Mutation p.A401D 0.03 deleterious(0) probably_damaging(1) TCGA-B7-A5TJ-01 12 56630233 56630233 G A SLC39A5 Silent p.E333E 0.16 TCGA-B7-A5TJ-01 12 9354925 9354925 C T PZP Missense_Mutation p.R157Q 0.70 deleterious(0.04) benign(0.002) TCGA-B7-A5TJ-01 13 114757999 114757999 A C RASA3 Missense_Mutation p.L736R 0.08 deleterious(0) probably_damaging(0.998) TCGA-B7-A5TJ-01 13 25670457 25670457 C T PABPC3 Missense_Mutation p.R41W 0.04 deleterious(0) possibly_damaging(0.901) TCGA-B7-A5TJ-01 13 26621012 26621012 G A SHISA2 Missense_Mutation p.S176L 0.09 deleterious(0) probably_damaging(0.999) TCGA-B7-A5TJ-01 13 46357444 46357444 C A SIAH3 3'UTR 0.04 TCGA-B7-A5TJ-01 13 53421284 53421284 C T PCDH8 Missense_Mutation p.A430T 0.23 tolerated(1) benign(0.013) TCGA-B7-A5TJ-01 13 66879023 66879023 T G PCDH9 Missense_Mutation p.T1160P 0.69 deleterious(0.01) benign(0.001) TCGA-B7-A5TJ-01 13 78492693 78492693 T C EDNRB Missense_Mutation p.S96G 0.08 tolerated_low_confidence(0.1) benign(0.164) TCGA-B7-A5TJ-01 13 78493594 78493594 A C EDNRB Missense_Mutation p.F53V 0.29 tolerated_low_confidence(1) benign(0) TCGA-B7-A5TJ-01 13 95953527 95953527 C A ABCC4 Missense_Mutation p.Q14H 0.09 tolerated(0.11) benign(0.289) TCGA-B7-A5TJ-01 14 102689302 102689302 C T WDR20 3'UTR 0.31 TCGA-B7-A5TJ-01 14 19553823 19553823 G A POTEG Missense_Mutation p.R136H 0.08 tolerated(0.12) benign(0.003) TCGA-B7-A5TJ-01 14 23248019 23248019 C A SLC7A7 Missense_Mutation p.E251D 0.04 deleterious(0) possibly_damaging(0.718) TCGA-B7-A5TJ-01 14 28733726 28733726 C T BNIP3P1 RNA 0.38 TCGA-B7-A5TJ-01 14 34400329 34400329 G A EGLN3 Silent p.Y150Y 0.04 TCGA-B7-A5TJ-01 14 35182276 35182276 C T CFL2 Silent p.K126K 0.77 TCGA-B7-A5TJ-01 14 52187080 52187080 C T FRMD6 Silent p.D444D 0.37 TCGA-B7-A5TJ-01 14 63269081 63269081 T G KCNH5 Missense_Mutation p.E596D 0.63 deleterious(0) possibly_damaging(0.903) TCGA-B7-A5TJ-01 14 75052601 75052601 C T LTBP2 Silent p.P262P 0.05 TCGA-B7-A5TJ-01 14 79933651 79933651 G A NRXN3 Missense_Mutation p.R744H 0.21 deleterious(0) benign(0) TCGA-B7-A5TJ-01 15 20488772 20488772 G T CHEK2P2 RNA 0.26 TCGA-B7-A5TJ-01 15 25470369 25470369 T C SNORD115-30 RNA 0.30 TCGA-B7-A5TJ-01 15 29346989 29346989 A G APBA2 Missense_Mutation p.K301R 0.45 deleterious_low_confidence(0.04) benign(0.224) TCGA-B7-A5TJ-01 15 43815692 43815692 C T MAP1A Missense_Mutation p.A674V 0.34 benign(0.015) TCGA-B7-A5TJ-01 15 56386211 56386211 C T RFX7 Missense_Mutation p.A1239T 0.13 tolerated_low_confidence(0.47) benign(0.005) TCGA-B7-A5TJ-01 15 84473424 84473424 C T ADAMTSL3 Missense_Mutation p.R114W 0.46 deleterious(0) probably_damaging(0.996) TCGA-B7-A5TJ-01 15 86124595 86124595 G T AKAP13 Missense_Mutation p.G1099V 0.22 deleterious_low_confidence(0) benign(0.079) TCGA-B7-A5TJ-01 15 90164760 90164760 G A TICRR Silent p.S1097S 0.08 TCGA-B7-A5TJ-01 15 90190140 90190140 C - KIF7 Frame_Shift_Del p.G570Vfs*29 0.09 TCGA-B7-A5TJ-01 16 20471485 20471485 C A ACSM2A Missense_Mutation p.Q17K 0.11 tolerated(0.71) benign(0.055) TCGA-B7-A5TJ-01 16 2354102 2354102 G A ABCA3 Silent p.D445D 0.32 TCGA-B7-A5TJ-01 16 28620108 28620120 GTACTTGATGAGC - SULT1A1 Frame_Shift_Del p.I21Qfs*30 0.14 TCGA-B7-A5TJ-01 16 30535854 30535854 G A ZNF768 Missense_Mutation p.A536V 0.23 deleterious_low_confidence(0.04) possibly_damaging(0.675) TCGA-B7-A5TJ-01 16 33647320 33647320 C T RP11-812E19.9 Missense_Mutation p.A94T 0.21 deleterious_low_confidence(0.05) benign(0.341) TCGA-B7-A5TJ-01 16 61851489 61851491 AGA TG CDH8 Frame_Shift_Del p.V390Afs*17 0.21 TCGA-B7-A5TJ-01 16 61935321 61935321 A G CDH8 Silent p.D103D 0.29 TCGA-B7-A5TJ-01 16 67428788 67428788 C A ZDHHC1 Silent p.G413G 0.39 TCGA-B7-A5TJ-01 16 89348059 89348059 G A ANKRD11 Missense_Mutation p.R1631W 0.48 probably_damaging(0.999) TCGA-B7-A5TJ-01 16 90160898 90160898 G A TUBB8P7 RNA 0.17 TCGA-B7-A5TJ-01 16 920856 920856 C T LMF1 Missense_Mutation p.V369I 0.08 tolerated(0.78) benign(0.006) TCGA-B7-A5TJ-01 17 10451167 10451167 C T MYH2 Missense_Mutation p.R24H 0.17 deleterious(0.03) benign(0.133) TCGA-B7-A5TJ-01 17 27086035 27086035 G A FAM222B Silent p.S314S 0.30 TCGA-B7-A5TJ-01 17 34068087 34068087 C T RASL10B Silent p.I125I 0.06 TCGA-B7-A5TJ-01 17 34236389 34236389 C T AC015849.16 RNA 0.30 TCGA-B7-A5TJ-01 17 45569821 45569821 G A MRPL45P2 RNA 0.32 TCGA-B7-A5TJ-01 17 4647504 4647507 AAAC - ZMYND15 Frame_Shift_Del p.K507Sfs*3 0.30 TCGA-B7-A5TJ-01 17 56247869 56247869 A T OR4D2 Missense_Mutation p.M285L 0.08 tolerated(1) benign(0.008) TCGA-B7-A5TJ-01 17 56435161 56435161 C - RNF43 Frame_Shift_Del p.G659Vfs*41 0.18 TCGA-B7-A5TJ-01 17 58303555 58303555 A - USP32 Frame_Shift_Del p.L426* 0.22 TCGA-B7-A5TJ-01 17 59479173 59479173 C T TBX2 Missense_Mutation p.A175V 0.05 deleterious(0.03) probably_damaging(0.978) TCGA-B7-A5TJ-01 17 7578521 7578523 GTT - TP53 In_Frame_Del p.Q136del 0.70 TCGA-B7-A5TJ-01 17 76558007 76558007 G A DNAH17 Missense_Mutation p.A542V 0.39 benign(0.002) TCGA-B7-A5TJ-01 17 8077631 8077631 A G TMEM107 Intron 0.24 TCGA-B7-A5TJ-01 18 12325877 12325877 G A TUBB6 Missense_Mutation p.M363I 0.05 tolerated_low_confidence(0.08) possibly_damaging(0.823) TCGA-B7-A5TJ-01 18 14478675 14478675 A G CXADRP3 RNA 0.81 TCGA-B7-A5TJ-01 18 32455316 32455316 C T DTNA Silent p.D532D 0.63 TCGA-B7-A5TJ-01 18 42529959 42529959 C A SETBP1 Missense_Mutation p.N218K 0.57 tolerated(0.05) benign(0.079) TCGA-B7-A5TJ-01 18 60587215 60587215 G A PHLPP1 Missense_Mutation p.R943Q 0.25 deleterious(0.04) probably_damaging(0.987) TCGA-B7-A5TJ-01 18 74607053 74607053 G A ZNF236 Missense_Mutation p.R499H 0.04 deleterious(0) probably_damaging(0.998) TCGA-B7-A5TJ-01 19 13910552 13910552 C T ZSWIM4 Missense_Mutation p.R58W 0.28 deleterious(0) possibly_damaging(0.835) TCGA-B7-A5TJ-01 19 1440417 1440417 G A RPS15 Missense_Mutation p.G132S 0.24 deleterious(0.03) benign(0.024) TCGA-B7-A5TJ-01 19 15739204 15739204 C T CYP4F8 RNA 0.09 TCGA-B7-A5TJ-01 19 16682353 16682353 C T SLC35E1 Silent p.R154R 0.04 TCGA-B7-A5TJ-01 19 19369440 19369440 C T HAPLN4 Missense_Mutation p.G237R 0.32 deleterious_low_confidence(0.01) probably_damaging(0.995) TCGA-B7-A5TJ-01 19 21720843 21720843 G A ZNF429 Missense_Mutation p.R663Q 0.42 tolerated_low_confidence(0.38) benign(0.012) TCGA-B7-A5TJ-01 19 22154247 22154248 AG - ZNF208 Frame_Shift_Del p.Y1197Qfs*3 0.08 TCGA-B7-A5TJ-01 19 3532525 3532525 G - FZR1 Frame_Shift_Del p.G375Afs*14 0.21 TCGA-B7-A5TJ-01 19 37660827 37660827 T C ZNF585A 5'UTR 0.16 TCGA-B7-A5TJ-01 19 38573183 38573183 C - SIPA1L3 Frame_Shift_Del p.P328Rfs*78 0.12 TCGA-B7-A5TJ-01 19 39805592 39805592 G A LRFN1 Missense_Mutation p.R129C 0.15 deleterious(0.01) possibly_damaging(0.872) TCGA-B7-A5TJ-01 19 45774828 45774828 C T MARK4 Silent p.C216C 0.07 TCGA-B7-A5TJ-01 19 45895561 45895561 C T PPP1R13L Silent p.P464P 0.10 TCGA-B7-A5TJ-01 19 46443436 46443436 G A NOVA2 Silent p.A388A 0.06 TCGA-B7-A5TJ-01 19 53208740 53208740 G C ZNF611 Nonsense_Mutation p.S523* 0.06 TCGA-B7-A5TJ-01 19 53209177 53209177 T G ZNF611 Missense_Mutation p.K377N 0.37 deleterious(0.01) probably_damaging(0.998) TCGA-B7-A5TJ-01 19 53453937 53453937 G A ZNF816 Missense_Mutation p.T364I 0.35 deleterious(0) possibly_damaging(0.567) TCGA-B7-A5TJ-01 19 53911869 53911869 C T ZNF765 Missense_Mutation p.P354L 0.33 deleterious(0.04) probably_damaging(0.998) TCGA-B7-A5TJ-01 19 57328029 57328029 C T PEG3 Missense_Mutation p.R594H 0.41 tolerated(0.21) possibly_damaging(0.485) TCGA-B7-A5TJ-01 19 58288010 58288010 G A ZNF586 Missense_Mutation p.E46K 0.21 deleterious(0.02) possibly_damaging(0.851) TCGA-B7-A5TJ-01 19 804617 804617 G T PTBP1 Missense_Mutation p.G174V 0.07 deleterious(0.04) benign(0.4) TCGA-B7-A5TJ-01 19 9065516 9065516 A C MUC16 Missense_Mutation p.I7310M 0.38 unknown(0) TCGA-B7-A5TJ-01 19 9071599 9071599 T C MUC16 Missense_Mutation p.T5283A 0.07 unknown(0) TCGA-B7-A5TJ-01 1 102290705 102290705 T G OLFM3 Missense_Mutation p.I157L 0.30 tolerated(0.41) benign(0.004) TCGA-B7-A5TJ-01 1 103385915 103385915 T G COL11A1 Silent p.P1238P 0.25 TCGA-B7-A5TJ-01 1 104116561 104116561 G A AMY2B Splice_Site p.X248_splice 0.04 TCGA-B7-A5TJ-01 1 107691401 107691401 A T NTNG1 Missense_Mutation p.K62N 0.37 tolerated(0.07) possibly_damaging(0.635) TCGA-B7-A5TJ-01 1 111998823 111998824 - A ATP5F1 Frame_Shift_Ins p.Y116Ifs*10 0.29 TCGA-B7-A5TJ-01 1 149916844 149916844 C T OTUD7B Missense_Mutation p.G482S 0.05 tolerated(0.78) benign(0.001) TCGA-B7-A5TJ-01 1 152128682 152128682 G A RPTN Missense_Mutation p.T298M 0.04 deleterious(0.01) benign(0.199) TCGA-B7-A5TJ-01 1 153954647 153954647 G A RAB13 Silent p.N180N 0.04 TCGA-B7-A5TJ-01 1 154931350 154931350 C T PYGO2 Missense_Mutation p.V376I 0.47 tolerated(0.09) possibly_damaging(0.751) TCGA-B7-A5TJ-01 1 155296507 155296507 G C RUSC1 Missense_Mutation p.E666D 0.05 deleterious(0) probably_damaging(0.99) TCGA-B7-A5TJ-01 1 155695186 155695186 G A DAP3 Missense_Mutation p.S95N 0.57 tolerated(1) benign(0) TCGA-B7-A5TJ-01 1 185833668 185833669 - GTTCTTTC HMCN1 Frame_Shift_Ins p.I139Vfs*36 0.20 TCGA-B7-A5TJ-01 1 185934951 185934951 G A HMCN1 Missense_Mutation p.V706I 0.06 probably_damaging(0.965) TCGA-B7-A5TJ-01 1 196250015 196250015 T C KCNT2 Missense_Mutation p.E962G 0.18 deleterious(0) benign(0.031) TCGA-B7-A5TJ-01 1 196748349 196748349 G A CFHR3 Missense_Mutation p.R39H 0.18 tolerated(0.37) benign(0.25) TCGA-B7-A5TJ-01 1 200967533 200967533 C T KIF21B Missense_Mutation p.D686N 0.04 deleterious(0.01) probably_damaging(0.993) TCGA-B7-A5TJ-01 1 201759875 201759875 C T NAV1 Missense_Mutation p.T1101M 0.17 deleterious(0) probably_damaging(0.993) TCGA-B7-A5TJ-01 1 202709804 202709804 G A KDM5B Nonsense_Mutation p.Q1028* 0.07 TCGA-B7-A5TJ-01 1 204923458 204923458 G A NFASC Missense_Mutation p.A120T 0.33 deleterious(0) probably_damaging(0.999) TCGA-B7-A5TJ-01 1 205138555 205138555 G A DSTYK Missense_Mutation p.R354C 0.25 tolerated(0.12) benign(0.004) TCGA-B7-A5TJ-01 1 205241152 205241152 G A TMCC2 Missense_Mutation p.R677H 0.03 tolerated(0.24) probably_damaging(0.952) TCGA-B7-A5TJ-01 1 214171022 214171022 G A PROX1 Missense_Mutation p.V382I 0.26 tolerated(0.4) benign(0.236) TCGA-B7-A5TJ-01 1 214830280 214830280 T C CENPF Silent p.T2830T 0.05 TCGA-B7-A5TJ-01 1 215847886 215847886 C T USH2A Missense_Mutation p.G4456D 0.24 probably_damaging(0.987) TCGA-B7-A5TJ-01 1 216420133 216420133 C T USH2A Missense_Mutation p.C868Y 0.27 probably_damaging(1) TCGA-B7-A5TJ-01 1 227921267 227921267 C T JMJD4 Missense_Mutation p.G270S 0.17 deleterious(0) benign(0.382) TCGA-B7-A5TJ-01 1 231906718 231906718 C A DISC1 Silent p.S512S 0.31 TCGA-B7-A5TJ-01 1 236898940 236898940 G A ACTN2 Missense_Mutation p.V235M 0.05 deleterious(0.01) possibly_damaging(0.888) TCGA-B7-A5TJ-01 1 248059069 248059069 T G OR2W3 Missense_Mutation p.F61V 0.49 deleterious(0) possibly_damaging(0.78) TCGA-B7-A5TJ-01 1 248224727 248224727 T G OR2L3 Silent p.T248T 0.11 TCGA-B7-A5TJ-01 1 248308867 248308867 A C OR2M5 Missense_Mutation p.I140L 0.26 tolerated(0.75) benign(0.003) TCGA-B7-A5TJ-01 1 35884071 35884075 GAAAT - ZMYM4 Frame_Shift_Del p.N1447Rfs*2 0.34 TCGA-B7-A5TJ-01 1 36219462 36219462 T A CLSPN Missense_Mutation p.N552I 0.07 deleterious(0) probably_damaging(0.997) TCGA-B7-A5TJ-01 1 48713097 48713097 C T SLC5A9 Missense_Mutation p.A668V 0.25 tolerated(0.14) benign(0.174) TCGA-B7-A5TJ-01 1 68944834 68944834 T - DEPDC1 Frame_Shift_Del p.K702Rfs*45 0.11 TCGA-B7-A5TJ-01 1 75055517 75055517 C T C1orf173 Silent p.P658P 0.25 TCGA-B7-A5TJ-01 1 79358836 79358836 A C ELTD1 Silent p.V596V 0.26 TCGA-B7-A5TJ-01 1 879350 879350 G A SAMD11 Silent p.Q621Q 0.04 TCGA-B7-A5TJ-01 20 18131568 18131569 - T CSRP2BP Frame_Shift_Ins p.L163Ffs*5 0.12 TCGA-B7-A5TJ-01 20 23966745 23966745 A T GGTLC1 Missense_Mutation p.V91E 0.50 deleterious(0.04) possibly_damaging(0.795) TCGA-B7-A5TJ-01 20 2795930 2795930 C T C20orf141 Missense_Mutation p.R34C 0.13 tolerated_low_confidence(0.18) benign(0) TCGA-B7-A5TJ-01 20 34067168 34067168 G A CEP250 Missense_Mutation p.R736Q 0.02 probably_damaging(0.999) TCGA-B7-A5TJ-01 20 3686514 3686514 C T SIGLEC1 Missense_Mutation p.G195S 0.11 deleterious(0.05) possibly_damaging(0.586) TCGA-B7-A5TJ-01 20 37144919 37144919 G A RALGAPB Silent p.P319P 0.14 TCGA-B7-A5TJ-01 20 3782936 3782936 C T CDC25B Silent p.R369R 0.15 TCGA-B7-A5TJ-01 20 51870861 51870861 A C TSHZ2 Missense_Mutation p.Q288H 0.26 deleterious(0) probably_damaging(0.998) TCGA-B7-A5TJ-01 20 55942076 55942076 C T RAE1 Nonsense_Mutation p.R159* 0.11 TCGA-B7-A5TJ-01 20 57415691 57415691 G A RP4-806M20.3 5'Flank 0.18 TCGA-B7-A5TJ-01 20 61594000 61594000 C T SLC17A9 Silent p.G174G 0.27 TCGA-B7-A5TJ-01 21 15599581 15599581 G A RBM11 Silent p.K271K 0.20 TCGA-B7-A5TJ-01 21 15882692 15882692 C T SAMSN1 Missense_Mutation p.R235H 0.24 deleterious(0) probably_damaging(0.994) TCGA-B7-A5TJ-01 21 19725236 19725236 A C TMPRSS15 Silent p.T385T 0.62 TCGA-B7-A5TJ-01 21 47662778 47662778 A G MCM3AP Silent p.V1788V 0.39 TCGA-B7-A5TJ-01 22 21084264 21084264 C T PI4KA Missense_Mutation p.V1442I 0.32 tolerated(0.35) benign(0.011) TCGA-B7-A5TJ-01 22 37893030 37893031 - TTGGTT CARD10 In_Frame_Ins p.P647_R648insKP 0.26 TCGA-B7-A5TJ-01 22 38323469 38323469 C T MICALL1 Missense_Mutation p.S506L 0.40 deleterious(0.04) probably_damaging(0.997) TCGA-B7-A5TJ-01 22 38349054 38349054 C A C22orf23 Missense_Mutation p.V35L 0.05 tolerated(0.41) benign(0.243) TCGA-B7-A5TJ-01 22 39066883 39066883 C A CBY1 Intron 0.36 TCGA-B7-A5TJ-01 22 44280192 44280192 C T PNPLA5 Missense_Mutation p.R328Q 0.23 tolerated(0.29) benign(0.004) TCGA-B7-A5TJ-01 22 50659081 50659081 C G TUBGCP6 Missense_Mutation p.R1236P 0.08 tolerated(0.41) possibly_damaging(0.767) TCGA-B7-A5TJ-01 22 50927667 50927667 G A MIOX Missense_Mutation p.G177R 0.17 deleterious(0) probably_damaging(0.998) TCGA-B7-A5TJ-01 2 103414389 103414389 G T TMEM182 Missense_Mutation p.L133F 0.11 tolerated(0.22) probably_damaging(0.992) TCGA-B7-A5TJ-01 2 125671924 125671924 T G CNTNAP5 3'UTR 0.41 TCGA-B7-A5TJ-01 2 12863597 12863597 C T TRIB2 Missense_Mutation p.S161L 0.49 tolerated(0.1) benign(0.315) TCGA-B7-A5TJ-01 2 138169183 138169183 A G THSD7B Silent p.K900K 0.21 TCGA-B7-A5TJ-01 2 148683686 148683686 A - ACVR2A Frame_Shift_Del p.K437Rfs*5 0.19 TCGA-B7-A5TJ-01 2 152107362 152107362 C T RBM43 3'UTR 0.14 TCGA-B7-A5TJ-01 2 152490448 152490448 A T NEB Missense_Mutation p.L3045H 0.25 probably_damaging(0.943) TCGA-B7-A5TJ-01 2 1670114 1670114 C T PXDN Missense_Mutation p.R388Q 0.29 deleterious(0.04) possibly_damaging(0.83) TCGA-B7-A5TJ-01 2 179432014 179432014 T G TTN Missense_Mutation p.K26282T 0.49 TCGA-B7-A5TJ-01 2 179441341 179441341 G A TTN Silent p.Y23210Y 0.21 TCGA-B7-A5TJ-01 2 179579117 179579117 T G TTN Missense_Mutation p.Q8795P 0.06 TCGA-B7-A5TJ-01 2 179584029 179584029 T A TTN Nonsense_Mutation p.K8030* 0.03 TCGA-B7-A5TJ-01 2 179616598 179616598 A C TTN Intron 0.47 TCGA-B7-A5TJ-01 2 179646951 179646951 G A TTN Missense_Mutation p.T1123I 0.05 TCGA-B7-A5TJ-01 2 192701336 192701336 C A SDPR Silent p.L197L 0.17 TCGA-B7-A5TJ-01 2 207170309 207170309 T G ZDBF2 Missense_Mutation p.F353V 0.60 tolerated(0.31) benign(0.307) TCGA-B7-A5TJ-01 2 207509066 207509066 C A AC010731.4 RNA 0.12 TCGA-B7-A5TJ-01 2 215818797 215818797 A T ABCA12 Missense_Mutation p.I2143N 0.24 deleterious(0) probably_damaging(0.961) TCGA-B7-A5TJ-01 2 233721514 233721514 A G GIGYF2 Missense_Mutation p.N1303D 0.05 unknown(0) TCGA-B7-A5TJ-01 2 238245167 238245167 G A COL6A3 Missense_Mutation p.P2859L 0.21 unknown(0) TCGA-B7-A5TJ-01 2 242741298 242741298 C T GAL3ST2 Silent p.F74F 0.22 TCGA-B7-A5TJ-01 2 24522983 24522983 T C ITSN2 Missense_Mutation p.K380R 0.03 tolerated(0.14) probably_damaging(0.993) TCGA-B7-A5TJ-01 2 68620325 68620325 A G PLEK Missense_Mutation p.K265R 0.48 tolerated(0.62) probably_damaging(0.999) TCGA-B7-A5TJ-01 2 89160423 89160423 G A IGKJ4 Silent p.G4G 0.05 TCGA-B7-A5TJ-01 2 9002810 9002810 C T MBOAT2 Silent p.T365T 0.21 TCGA-B7-A5TJ-01 3 108475996 108475996 G A RETNLB Missense_Mutation p.P13S 0.28 tolerated(0.7) benign(0.004) TCGA-B7-A5TJ-01 3 120941908 120941908 A C STXBP5L Missense_Mutation p.S339R 0.46 deleterious(0.01) possibly_damaging(0.875) TCGA-B7-A5TJ-01 3 123359315 123359315 G A MYLK Silent p.D1552D 0.21 TCGA-B7-A5TJ-01 3 125850284 125850284 G A ALDH1L1 Silent p.H532H 0.06 TCGA-B7-A5TJ-01 3 13368918 13368918 C T NUP210 Missense_Mutation p.G1436R 0.42 tolerated(0.16) possibly_damaging(0.474) TCGA-B7-A5TJ-01 3 154055666 154055666 G A GPR149 Missense_Mutation p.S673F 0.23 deleterious(0) probably_damaging(0.999) TCGA-B7-A5TJ-01 3 154055924 154055924 T C GPR149 Missense_Mutation p.K587R 0.03 tolerated(0.06) probably_damaging(0.917) TCGA-B7-A5TJ-01 3 167045808 167045808 A G ZBBX Missense_Mutation p.F262L 0.04 deleterious(0) possibly_damaging(0.88) TCGA-B7-A5TJ-01 3 179322615 179322615 G A NDUFB5 Missense_Mutation p.M4I 0.30 deleterious(0.01) probably_damaging(0.996) TCGA-B7-A5TJ-01 3 183681355 183681355 G T ABCC5 Missense_Mutation p.L685M 0.22 deleterious(0) probably_damaging(1) TCGA-B7-A5TJ-01 3 25670621 25670621 G T TOP2B Missense_Mutation p.H564N 0.24 deleterious(0) probably_damaging(0.996) TCGA-B7-A5TJ-01 3 3146638 3146638 G A IL5RA Missense_Mutation p.L11F 0.06 deleterious(0) benign(0.266) TCGA-B7-A5TJ-01 3 37512575 37512575 G A ITGA9 Missense_Mutation p.R88H 0.31 deleterious(0.01) probably_damaging(0.98) TCGA-B7-A5TJ-01 3 44951844 44951844 G A TGM4 Silent p.S530S 0.27 TCGA-B7-A5TJ-01 3 44968199 44968199 C T ZDHHC3 Silent p.P322P 0.24 TCGA-B7-A5TJ-01 3 46009351 46009351 C T FYCO1 Missense_Mutation p.R492Q 0.07 tolerated(0.53) benign(0.001) TCGA-B7-A5TJ-01 3 47043985 47043985 G A NBEAL2 Missense_Mutation p.R1759H 0.27 deleterious(0.04) benign(0.014) TCGA-B7-A5TJ-01 3 74334556 74334556 G A CNTN3 Silent p.G868G 0.07 TCGA-B7-A5TJ-01 3 88039930 88039930 T G HTR1F Missense_Mutation p.L11V 0.13 tolerated(0.53) benign(0.003) TCGA-B7-A5TJ-01 3 97888236 97888236 T A OR5H15 Missense_Mutation p.D231E 0.07 tolerated(1) benign(0) TCGA-B7-A5TJ-01 3 98073198 98073198 T G OR5K4 Silent p.T167T 0.18 TCGA-B7-A5TJ-01 4 101331501 101331501 C A EMCN Missense_Mutation p.A255S 0.37 deleterious(0.02) probably_damaging(0.983) TCGA-B7-A5TJ-01 4 115997436 115997437 AG - NDST4 Frame_Shift_Del p.F253Cfs*11 0.35 TCGA-B7-A5TJ-01 4 119947975 119947975 G A SYNPO2 Missense_Mutation p.D151N 0.36 tolerated(0.36) benign(0.005) TCGA-B7-A5TJ-01 4 147561615 147561615 C T POU4F2 Silent p.S295S 0.07 TCGA-B7-A5TJ-01 4 3952870 3952870 T G FAM86EP Intron 0.21 TCGA-B7-A5TJ-01 4 68610326 68610326 G T GNRHR Silent p.I234I 0.27 TCGA-B7-A5TJ-01 5 102360935 102360935 G A PAM Silent p.S862S 0.29 TCGA-B7-A5TJ-01 5 137593479 137593479 C T GFRA3 Missense_Mutation p.A212T 0.08 tolerated(0.67) probably_damaging(0.918) TCGA-B7-A5TJ-01 5 137735660 137735660 G A KDM3B Missense_Mutation p.C1053Y 0.36 deleterious(0) possibly_damaging(0.836) TCGA-B7-A5TJ-01 5 13786338 13786338 C T DNAH5 Missense_Mutation p.A2924T 0.24 possibly_damaging(0.798) TCGA-B7-A5TJ-01 5 140346635 140346635 C T PCDHAC2 Missense_Mutation p.T95M 0.26 deleterious(0.02) possibly_damaging(0.806) TCGA-B7-A5TJ-01 5 140712192 140712192 G T PCDHGA1 Missense_Mutation p.Q647H 0.24 deleterious_low_confidence(0.01) probably_damaging(0.981) TCGA-B7-A5TJ-01 5 140712478 140712478 G A PCDHGA1 Missense_Mutation p.V743M 0.31 tolerated_low_confidence(0.17) benign(0.085) TCGA-B7-A5TJ-01 5 150029807 150029807 G A SYNPO Missense_Mutation p.R901Q 0.33 deleterious(0.02) probably_damaging(0.921) TCGA-B7-A5TJ-01 5 150948306 150948306 C T FAT2 Missense_Mutation p.A63T 0.29 benign(0.001) TCGA-B7-A5TJ-01 5 160047743 160047743 T C ATP10B Missense_Mutation p.D676G 0.34 tolerated(0.24) probably_damaging(0.945) TCGA-B7-A5TJ-01 5 161324429 161324429 A T GABRA1 3'UTR 0.06 TCGA-B7-A5TJ-01 5 162943688 162943688 T C MAT2B Missense_Mutation p.C231R 0.27 deleterious(0.04) probably_damaging(0.961) TCGA-B7-A5TJ-01 5 45645460 45645460 A C HCN1 Missense_Mutation p.F226V 0.30 deleterious(0) probably_damaging(0.992) TCGA-B7-A5TJ-01 5 52366069 52366069 C T ITGA2 Silent p.P738P 0.31 TCGA-B7-A5TJ-01 5 64468720 64468720 C T ADAMTS6 Missense_Mutation p.R1009H 0.06 tolerated(0.09) possibly_damaging(0.871) TCGA-B7-A5TJ-01 5 92923850 92923850 G A NR2F1 Missense_Mutation p.V231I 0.36 tolerated(0.13) benign(0.272) TCGA-B7-A5TJ-01 5 98207890 98207890 G A CHD1 Silent p.C1242C 0.07 TCGA-B7-A5TJ-01 6 10398872 10398872 G A TFAP2A Silent p.P364P 0.05 TCGA-B7-A5TJ-01 6 117073819 117073826 CCAAGTTC - FAM162B Frame_Shift_Del p.W141Cfs*5 0.20 TCGA-B7-A5TJ-01 6 153077304 153077304 G A VIP Missense_Mutation p.R124H 0.69 deleterious(0.04) probably_damaging(0.999) TCGA-B7-A5TJ-01 6 28887843 28887843 G A TRIM27 Silent p.S231S 0.06 TCGA-B7-A5TJ-01 6 30079499 30079499 G A TRIM31 Nonsense_Mutation p.Q147* 0.23 TCGA-B7-A5TJ-01 6 31599480 31599480 G A PRRC2A Silent p.R1010R 0.26 TCGA-B7-A5TJ-01 6 31833521 31833521 T C SLC44A4 Missense_Mutation p.T510A 0.16 tolerated(1) benign(0.3) TCGA-B7-A5TJ-01 6 43475390 43475390 G T LRRC73 Nonsense_Mutation p.Y228* 0.06 TCGA-B7-A5TJ-01 6 52905967 52905967 C T ICK Missense_Mutation p.S23N 0.26 deleterious(0.04) benign(0.147) TCGA-B7-A5TJ-01 6 72678732 72678732 A C RIMS1 Silent p.R71R 0.06 TCGA-B7-A5TJ-01 6 90604825 90604825 T C GJA10 Missense_Mutation p.L213P 0.66 deleterious(0) probably_damaging(0.971) TCGA-B7-A5TJ-01 7 117170954 117170954 A T CFTR Missense_Mutation p.E92V 0.21 deleterious(0) possibly_damaging(0.779) TCGA-B7-A5TJ-01 7 120387737 120387737 G A KCND2 Missense_Mutation p.R573Q 0.14 deleterious_low_confidence(0.03) possibly_damaging(0.862) TCGA-B7-A5TJ-01 7 131913116 131913116 A T PLXNA4 Missense_Mutation p.Y573N 0.10 tolerated(0.29) benign(0.391) TCGA-B7-A5TJ-01 7 143929624 143929624 T C OR2A42 Missense_Mutation p.S105G 0.66 tolerated(0.14) benign(0.001) TCGA-B7-A5TJ-01 7 42005935 42005935 G A GLI3 Silent p.S912S 0.28 TCGA-B7-A5TJ-01 7 4722396 4722396 T G FOXK1 Missense_Mutation p.F153V 0.19 tolerated(0.12) benign(0.18) TCGA-B7-A5TJ-01 7 73927297 73927297 C T GTF2IRD1 Silent p.F87F 0.05 TCGA-B7-A5TJ-01 7 74005218 74005218 C T GTF2IRD1 Silent p.D853D 0.06 TCGA-B7-A5TJ-01 7 94229960 94229960 G A SGCE Silent p.G345G 0.11 TCGA-B7-A5TJ-01 7 95023980 95023980 T A PON3 Missense_Mutation p.N41Y 0.25 deleterious(0.01) benign(0.003) TCGA-B7-A5TJ-01 8 124663889 124663889 G A KLHL38 Silent p.V426V 0.17 TCGA-B7-A5TJ-01 8 139165293 139165293 T G FAM135B Missense_Mutation p.E475D 0.50 tolerated(0.15) benign(0.004) TCGA-B7-A5TJ-01 8 141461087 141461087 C T TRAPPC9 Missense_Mutation p.R227H 0.56 deleterious(0.01) probably_damaging(0.993) TCGA-B7-A5TJ-01 8 144332534 144332534 C T ZFP41 Missense_Mutation p.T174M 0.03 tolerated(0.06) benign(0.004) TCGA-B7-A5TJ-01 8 144732467 144732467 G A ZNF623 Missense_Mutation p.R142Q 0.03 tolerated(1) benign(0.002) TCGA-B7-A5TJ-01 8 144811385 144811385 C T FAM83H Missense_Mutation p.A186T 0.05 deleterious(0) possibly_damaging(0.851) TCGA-B7-A5TJ-01 8 145095740 145095740 C T SPATC1 Silent p.A346A 0.26 TCGA-B7-A5TJ-01 8 2024315 2024315 G A MYOM2 Silent p.P405P 0.29 TCGA-B7-A5TJ-01 8 2088785 2088785 C T MYOM2 Missense_Mutation p.R1314C 0.25 deleterious(0) probably_damaging(0.998) TCGA-B7-A5TJ-01 8 26481667 26481667 G A DPYSL2 Missense_Mutation p.V108I 0.44 deleterious(0.02) benign(0.119) TCGA-B7-A5TJ-01 8 26627968 26627968 C T ADRA1A Missense_Mutation p.V367M 0.20 tolerated(0.28) benign(0.075) TCGA-B7-A5TJ-01 8 2967736 2967736 A C CSMD1 Silent p.V2184V 0.15 TCGA-B7-A5TJ-01 8 32617751 32617751 C T NRG1 Silent p.S370S 0.27 TCGA-B7-A5TJ-01 8 69012017 69012017 T G PREX2 Missense_Mutation p.F885C 0.20 deleterious(0) possibly_damaging(0.781) TCGA-B7-A5TJ-01 8 72973967 72973967 A G TRPA1 Silent p.A279A 0.18 TCGA-B7-A5TJ-01 8 77776432 77776432 C T ZFHX4 Silent p.V3494V 0.50 TCGA-B7-A5TJ-01 9 103092225 103092225 G A TEX10 Nonsense_Mutation p.Q493* 0.41 TCGA-B7-A5TJ-01 9 110250158 110250158 A G KLF4 Missense_Mutation p.Y173H 0.46 tolerated(0.08) probably_damaging(0.986) TCGA-B7-A5TJ-01 9 117666471 117666471 C T TNFSF8 Missense_Mutation p.V149I 0.34 tolerated(0.32) possibly_damaging(0.847) TCGA-B7-A5TJ-01 9 123624890 123624890 C T PHF19 Missense_Mutation p.R369H 0.05 tolerated(0.05) benign(0.001) TCGA-B7-A5TJ-01 9 127572575 127572575 C T OLFML2A Missense_Mutation p.P615S 0.06 tolerated(0.43) possibly_damaging(0.876) TCGA-B7-A5TJ-01 9 130586619 130586619 G A ENG Silent p.D366D 0.06 TCGA-B7-A5TJ-01 9 131745578 131745578 G A NUP188 Silent p.T601T 0.08 TCGA-B7-A5TJ-01 9 15623324 15623324 T A CCDC171 Missense_Mutation p.H245Q 0.18 tolerated(0.06) benign(0.037) TCGA-B7-A5TJ-01 9 15971636 15971636 C T CCDC171 Silent p.S1261S 0.07 TCGA-B7-A5TJ-01 9 34372835 34372835 T C KIAA1161 Missense_Mutation p.Y2C 0.05 deleterious_low_confidence(0.01) possibly_damaging(0.72) TCGA-B7-A5TJ-01 9 39073899 39073899 T - CNTNAP3 Frame_Shift_Del p.E1286Kfs*27 0.09 TCGA-B7-A5TJ-01 9 4741004 4741004 A T AK3 Silent p.T28T 0.12 TCGA-B7-A5TJ-01 9 73167767 73167767 G A TRPM3 Silent p.Y1177Y 0.21 TCGA-B7-A5TJ-01 9 79635343 79635343 C T FOXB2 Missense_Mutation p.A258V 0.36 tolerated_low_confidence(0.27) possibly_damaging(0.599) TCGA-B7-A5TJ-01 9 86590446 86590446 A G HNRNPK Intron 0.40 TCGA-B7-A5TJ-01 X 102334518 102334518 C A NXF3 Missense_Mutation p.D405Y 0.05 deleterious(0) probably_damaging(0.963) TCGA-B7-A5TJ-01 X 102755664 102755664 G A RAB40A Silent p.P7P 0.68 TCGA-B7-A5TJ-01 X 105153078 105153078 A G NRK Missense_Mutation p.Q483R 0.57 deleterious(0.01) benign(0.275) TCGA-B7-A5TJ-01 X 107868943 107868943 G A COL4A5 Missense_Mutation p.G1009S 0.56 unknown(0) TCGA-B7-A5TJ-01 X 140785779 140785779 T C SPANXD Missense_Mutation p.E46G 0.05 deleterious(0.01) benign(0.422) TCGA-B7-A5TJ-01 X 140995998 140995998 G T MAGEC1 Silent p.T936T 0.73 TCGA-B7-A5TJ-01 X 153069654 153069654 G A PDZD4 Silent p.P488P 0.55 TCGA-B7-A5TJ-01 X 1584485 1584485 C T P2RY8 Missense_Mutation p.E323K 0.23 tolerated(0.07) benign(0.3) TCGA-B7-A5TJ-01 X 23953370 23953370 C T CXorf58 Missense_Mutation p.R205C 0.08 deleterious(0) probably_damaging(0.999) TCGA-B7-A5TJ-01 X 47044603 47044603 G A RBM10 Silent p.K700K 0.69 TCGA-B7-A5TJ-01 X 53227954 53227954 C T KDM5C Missense_Mutation p.R787Q 0.06 tolerated(0.21) benign(0.067) TCGA-B7-A5TJ-01 X 5811198 5811198 C T NLGN4X Missense_Mutation p.R704H 0.13 tolerated(0.17) probably_damaging(0.984) TCGA-B7-A5TJ-01 X 6451831 6451831 T G VCX3A Missense_Mutation p.E172D 0.18 tolerated(0.3) unknown(0) TCGA-B7-A5TJ-01 X 7812012 7812012 A C VCX Missense_Mutation p.E192D 0.12 tolerated(0.31) unknown(0) TCGA-B7-A5TJ-01 X 8434349 8434349 A C VCX3B Missense_Mutation p.E222D 0.26 tolerated(0.09) unknown(0) TCGA-B7-A5TJ-01 X 90691229 90691229 T G PABPC5 Missense_Mutation p.L218R 0.64 deleterious(0.01) benign(0.347) TCGA-B7-A5TK-01 10 131646719 131646719 G A EBF3 Silent p.Y346Y 0.10 TCGA-B7-A5TK-01 10 26789841 26789841 C A APBB1IP Missense_Mutation p.A85E 0.12 tolerated(0.1) possibly_damaging(0.907) TCGA-B7-A5TK-01 10 63212688 63212688 G A TMEM26 Missense_Mutation p.A51V 0.14 tolerated(0.99) benign(0.007) TCGA-B7-A5TK-01 11 101375406 101375406 C A TRPC6 Missense_Mutation p.E98D 0.13 tolerated(0.19) benign(0.007) TCGA-B7-A5TK-01 11 1017775 1017775 T A MUC6 Missense_Mutation p.S1676C 0.02 unknown(0) TCGA-B7-A5TK-01 11 1090891 1090891 G A MUC2 Silent p.P1262P 0.14 TCGA-B7-A5TK-01 11 113130964 113130964 G A NCAM1 Missense_Mutation p.V733M 0.09 deleterious(0) probably_damaging(0.975) TCGA-B7-A5TK-01 11 118014634 118014634 G A SCN4B Missense_Mutation p.T126M 0.14 deleterious(0.02) possibly_damaging(0.875) TCGA-B7-A5TK-01 11 43342378 43342378 G A API5 Missense_Mutation p.R80H 0.13 deleterious(0) benign(0.056) TCGA-B7-A5TK-01 11 61161436 61161436 C T TMEM216 Missense_Mutation p.R73C 0.06 deleterious(0) probably_damaging(0.996) TCGA-B7-A5TK-01 11 61541499 61541499 C T MYRF Silent p.D392D 0.09 TCGA-B7-A5TK-01 11 62348889 62348889 C T TUT1 Silent p.L224L 0.11 TCGA-B7-A5TK-01 11 62348958 62348958 C G TUT1 Missense_Mutation p.M201I 0.09 tolerated(0.08) benign(0.155) TCGA-B7-A5TK-01 11 65408496 65408496 C T SIPA1 Missense_Mutation p.P35L 0.21 deleterious(0) probably_damaging(0.999) TCGA-B7-A5TK-01 11 65780887 65780898 GAAGGCCATTGG - CST6 3'UTR 0.18 TCGA-B7-A5TK-01 11 83195231 83195231 C T DLG2 Missense_Mutation p.R745Q 0.11 deleterious(0.02) probably_damaging(0.914) TCGA-B7-A5TK-01 12 114841665 114841665 C T TBX5 Silent p.T13T 0.14 TCGA-B7-A5TK-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.47 deleterious(0) benign(0.361) TCGA-B7-A5TK-01 13 113729415 113729415 G A MCF2L Missense_Mutation p.R407Q 0.14 tolerated(0.12) benign(0.002) TCGA-B7-A5TK-01 14 24113686 24113686 G T DHRS2 Silent p.L203L 0.16 TCGA-B7-A5TK-01 14 36840575 36840575 G A DPPA3P2 RNA 0.25 TCGA-B7-A5TK-01 14 51382183 51382183 C T PYGL Missense_Mutation p.R425H 0.21 deleterious(0.02) possibly_damaging(0.848) TCGA-B7-A5TK-01 14 75278327 75278327 C G YLPM1 Missense_Mutation p.Q1745E 0.13 benign(0.151) TCGA-B7-A5TK-01 15 22368884 22368884 C A OR4M2 Missense_Mutation p.F103L 0.03 deleterious(0.04) probably_damaging(0.993) TCGA-B7-A5TK-01 15 62945424 62945424 G A TLN2 Missense_Mutation p.G143E 0.15 tolerated(0.38) benign(0.004) TCGA-B7-A5TK-01 16 2036038 2036038 C G GFER 3'UTR 0.16 TCGA-B7-A5TK-01 16 25704308 25704308 C T HS3ST4 Silent p.P190P 0.18 TCGA-B7-A5TK-01 16 29815362 29815362 G A KIF22 Silent p.L551L 0.11 TCGA-B7-A5TK-01 17 18565744 18565744 C G ZNF286B Missense_Mutation p.E359Q 0.08 deleterious(0.03) probably_damaging(0.992) TCGA-B7-A5TK-01 17 38643437 38643437 C A TNS4 Missense_Mutation p.C380F 0.10 tolerated(0.05) benign(0.002) TCGA-B7-A5TK-01 17 45917632 45917632 C T SCRN2 Missense_Mutation p.C94Y 0.12 deleterious(0) probably_damaging(0.999) TCGA-B7-A5TK-01 18 9547699 9547699 C T PPP4R1 3'UTR 0.16 TCGA-B7-A5TK-01 19 2222335 2222335 C T DOT1L Missense_Mutation p.A1056V 0.14 tolerated_low_confidence(0.17) benign(0.079) TCGA-B7-A5TK-01 19 31025809 31025809 C T ZNF536 Silent p.R742R 0.10 TCGA-B7-A5TK-01 19 33647373 33647373 C T WDR88 Nonsense_Mutation p.R308* 0.10 TCGA-B7-A5TK-01 19 3964978 3964978 G A DAPK3 Missense_Mutation p.A25V 0.08 deleterious(0) probably_damaging(0.996) TCGA-B7-A5TK-01 19 4929359 4929359 C T MIR4747 5'Flank 0.12 TCGA-B7-A5TK-01 19 50473409 50473409 G C SIGLEC16 RNA 0.20 TCGA-B7-A5TK-01 19 7965351 7965351 C T LRRC8E Silent p.H648H 0.16 TCGA-B7-A5TK-01 1 115273234 115273234 G A CSDE1 Silent p.F408F 0.12 TCGA-B7-A5TK-01 1 1225720 1225720 C A SCNN1D Missense_Mutation p.L578M 0.14 deleterious(0) probably_damaging(0.994) TCGA-B7-A5TK-01 1 149858827 149858827 C T HIST2H2AC Silent p.V101V 0.04 TCGA-B7-A5TK-01 1 152080396 152080396 C T TCHH Missense_Mutation p.R1766H 0.17 unknown(0) TCGA-B7-A5TK-01 1 159043116 159043116 C T AIM2 Silent p.A58A 0.11 TCGA-B7-A5TK-01 1 27087894 27087898 GCCAC - ARID1A Frame_Shift_Del p.P728Qfs*87 0.12 TCGA-B7-A5TK-01 1 32797379 32797379 C T HDAC1 Silent p.D397D 0.23 TCGA-B7-A5TK-01 1 41990478 41990478 T C HIVEP3 Missense_Mutation p.K1771E 0.11 probably_damaging(0.998) TCGA-B7-A5TK-01 1 48698051 48698051 C T SLC5A9 Missense_Mutation p.R329W 0.19 deleterious(0) probably_damaging(1) TCGA-B7-A5TK-01 20 17475494 17475494 C A BFSP1 Missense_Mutation p.S408I 0.09 tolerated(0.06) benign(0.102) TCGA-B7-A5TK-01 20 34301005 34301005 C T RBM39 Silent p.Q370Q 0.09 TCGA-B7-A5TK-01 21 42840442 42840442 C T TMPRSS2 Missense_Mutation p.A436T 0.06 tolerated(0.35) benign(0.345) TCGA-B7-A5TK-01 22 50921194 50921199 CCAGCT - ADM2 In_Frame_Del p.Q104_L105del 0.25 TCGA-B7-A5TK-01 2 170677660 170677660 C A METTL5 Missense_Mutation p.M116I 0.07 tolerated(0.42) benign(0.001) TCGA-B7-A5TK-01 2 44599963 44599963 G C CAMKMT Missense_Mutation p.E83Q 0.13 tolerated(0.14) benign(0.05) TCGA-B7-A5TK-01 2 50463983 50463983 C T NRXN1 Missense_Mutation p.V1204I 0.14 tolerated(0.68) benign(0.005) TCGA-B7-A5TK-01 2 72958339 72958339 T C EXOC6B Silent p.R121R 0.13 TCGA-B7-A5TK-01 3 178936095 178936095 A G PIK3CA Missense_Mutation p.Q546R 0.07 deleterious(0.02) probably_damaging(0.984) TCGA-B7-A5TK-01 3 52240747 52240747 A - ALAS1 Frame_Shift_Del p.T383Lfs*78 0.11 TCGA-B7-A5TK-01 5 45262136 45262136 G A HCN1 Nonsense_Mutation p.R854* 0.08 TCGA-B7-A5TK-01 6 117114191 117114191 A G GPRC6A Missense_Mutation p.V632A 0.10 deleterious(0) benign(0.393) TCGA-B7-A5TK-01 6 161518192 161518192 A T MAP3K4 Missense_Mutation p.T1170S 0.15 tolerated(0.38) benign(0.025) TCGA-B7-A5TK-01 6 165848835 165848835 T C PDE10A Missense_Mutation p.K143E 0.09 tolerated(0.37) benign(0.095) TCGA-B7-A5TK-01 6 51484251 51484251 G T PKHD1 Silent p.S3951S 0.10 TCGA-B7-A5TK-01 7 39991356 39991356 C A CDK13 Silent p.R372R 0.16 TCGA-B7-A5TK-01 7 72891796 72891796 A G BAZ1B Silent p.D665D 0.13 TCGA-B7-A5TK-01 8 113364692 113364692 C A CSMD3 Missense_Mutation p.V2070F 0.09 deleterious(0) probably_damaging(1) TCGA-B7-A5TK-01 8 142458122 142458122 G A SNORD5 3'Flank 0.17 TCGA-B7-A5TK-01 9 33280925 33280925 C G CHMP5 3'UTR 0.11 TCGA-B7-A5TK-01 9 34514537 34514537 T C DNAI1 Missense_Mutation p.I572T 0.18 tolerated(0.38) benign(0.004) TCGA-B7-A5TK-01 9 37740711 37740711 G A FRMPD1 Missense_Mutation p.R729Q 0.17 tolerated(0.24) benign(0.018) TCGA-B7-A5TK-01 X 100183004 100183004 G A XKRX Missense_Mutation p.P97L 0.12 deleterious(0) probably_damaging(0.999) TCGA-B7-A5TK-01 X 125299656 125299656 G T DCAF12L2 Silent p.P84P 0.11 TCGA-B7-A5TK-01 X 13587931 13587931 G A EGFL6 5'UTR 0.08 TCGA-B7-A5TK-01 X 153593615 153593615 C T FLNA Missense_Mutation p.R527H 0.17 tolerated(0.09) benign(0.018) TCGA-B7-A5TN-01 10 15600155 15600155 C T ITGA8 Missense_Mutation p.R895Q 0.17 tolerated(0.3) benign(0.037) TCGA-B7-A5TN-01 10 28260195 28260195 G T ARMC4 Silent p.G328G 0.28 TCGA-B7-A5TN-01 10 50122144 50122144 C A LRRC18 Missense_Mutation p.R19S 0.17 deleterious(0) benign(0.014) TCGA-B7-A5TN-01 10 96796831 96796832 - A CYP2C8 3'UTR 0.24 TCGA-B7-A5TN-01 11 123777192 123777194 TGA AG OR8D4 Frame_Shift_Del p.E19Dfs*14 0.27 TCGA-B7-A5TN-01 11 123900399 123900399 C G OR10G8 Missense_Mutation p.P24A 0.08 tolerated(0.47) benign(0.001) TCGA-B7-A5TN-01 11 2356928 2356928 A G CD81-AS1 Intron 0.06 TCGA-B7-A5TN-01 11 36614717 36614717 G T RAG2 Missense_Mutation p.D334E 0.33 tolerated(1) benign(0.256) TCGA-B7-A5TN-01 11 4623468 4623468 C T TRIM68 Missense_Mutation p.E233K 0.40 tolerated(1) benign(0.001) TCGA-B7-A5TN-01 11 56258413 56258413 G A OR5M8 Missense_Mutation p.T145M 0.28 tolerated(0.19) benign(0.028) TCGA-B7-A5TN-01 11 57571235 57571235 T G CTNND1 Missense_Mutation p.I521M 0.33 tolerated(0.16) benign(0.011) TCGA-B7-A5TN-01 11 86158141 86158141 T C ME3 Missense_Mutation p.E449G 0.08 deleterious(0) probably_damaging(1) TCGA-B7-A5TN-01 12 49998170 49998171 - T FAM186B Frame_Shift_Ins p.I83Nfs*17 0.26 TCGA-B7-A5TN-01 13 100861643 100861643 G A PCCA Missense_Mutation p.D176N 0.19 deleterious(0.01) probably_damaging(0.916) TCGA-B7-A5TN-01 13 47409144 47409144 G C HTR2A Missense_Mutation p.P415R 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-B7-A5TN-01 14 105419206 105419206 G A AHNAK2 Missense_Mutation p.P861L 0.26 benign(0.288) TCGA-B7-A5TN-01 14 106236232 106236232 G A IGHG3 Silent p.C191C 0.21 TCGA-B7-A5TN-01 15 24921998 24921998 G C NPAP1 Missense_Mutation p.R328S 0.12 deleterious(0) possibly_damaging(0.86) TCGA-B7-A5TN-01 15 40898609 40898609 A T CASC5 Missense_Mutation p.S32C 0.13 deleterious(0) probably_damaging(0.999) TCGA-B7-A5TN-01 15 45558303 45558303 A C SLC28A2 Missense_Mutation p.M296L 0.14 tolerated(0.17) benign(0.014) TCGA-B7-A5TN-01 16 19056299 19056299 C T TMC7 Silent p.C477C 0.14 TCGA-B7-A5TN-01 16 29708771 29708771 C T QPRT 3'UTR 0.36 TCGA-B7-A5TN-01 16 30723019 30723019 C T SRCAP Silent p.P482P 0.36 TCGA-B7-A5TN-01 16 30768964 30768964 C T C16orf93 Missense_Mutation p.V277I 0.28 tolerated(0.69) benign(0) TCGA-B7-A5TN-01 16 321404 321404 A C RGS11 Missense_Mutation p.L248R 0.31 deleterious(0) probably_damaging(0.997) TCGA-B7-A5TN-01 16 4847838 4847838 C G ROGDI Missense_Mutation p.E233D 0.15 tolerated(0.18) benign(0.349) TCGA-B7-A5TN-01 16 55532322 55532322 C T MMP2 Silent p.N577N 0.52 TCGA-B7-A5TN-01 17 62893202 62893202 C T LRRC37A3 Silent p.E58E 0.14 TCGA-B7-A5TN-01 17 65942002 65942003 CA - BPTF Frame_Shift_Del p.Q2394Tfs*128 0.18 TCGA-B7-A5TN-01 17 68171316 68171316 C T KCNJ2 Missense_Mutation p.R46C 0.29 deleterious(0) probably_damaging(0.999) TCGA-B7-A5TN-01 17 7577081 7577081 T C TP53 Missense_Mutation p.E286G 0.59 deleterious(0) probably_damaging(0.988) TCGA-B7-A5TN-01 17 76502891 76502891 C T DNAH17 Missense_Mutation p.E1568K 0.21 probably_damaging(0.979) TCGA-B7-A5TN-01 18 31326439 31326439 G A ASXL3 Silent p.L2209L 0.28 TCGA-B7-A5TN-01 18 39593494 39593494 A C PIK3C3 Missense_Mutation p.K420T 0.10 tolerated(0.3) benign(0.007) TCGA-B7-A5TN-01 18 44560580 44560580 C T TCEB3B Silent p.P352P 0.35 TCGA-B7-A5TN-01 18 65179408 65179408 A C DSEL Missense_Mutation p.F823C 0.22 tolerated(0.05) benign(0.006) TCGA-B7-A5TN-01 18 65179532 65179532 A T DSEL Missense_Mutation p.F782I 0.23 tolerated(0.65) benign(0.002) TCGA-B7-A5TN-01 18 8376517 8376517 C T PTPRM Silent p.A1128A 0.16 TCGA-B7-A5TN-01 19 11332621 11332621 G A DOCK6 Silent p.Y1152Y 0.54 TCGA-B7-A5TN-01 19 13335579 13335579 A C CACNA1A Missense_Mutation p.L1878R 0.43 benign(0.047) TCGA-B7-A5TN-01 19 37620055 37620056 AT - ZNF420 3'UTR 0.39 TCGA-B7-A5TN-01 19 3831839 3831839 G T ZFR2 Silent p.G139G 0.44 TCGA-B7-A5TN-01 19 41387596 41387596 G C CYP2A7 Missense_Mutation p.L81V 0.26 deleterious(0.01) probably_damaging(1) TCGA-B7-A5TN-01 19 43680242 43680242 A G PSG5 Silent p.D163D 0.17 TCGA-B7-A5TN-01 19 51561828 51561828 G A KLK13 Silent p.A204A 0.48 TCGA-B7-A5TN-01 19 56688494 56688494 T C GALP Missense_Mutation p.V6A 0.11 tolerated_low_confidence(0.49) unknown(0) TCGA-B7-A5TN-01 19 58982761 58982761 C T ZNF324 Missense_Mutation p.T301M 0.19 deleterious(0) probably_damaging(0.999) TCGA-B7-A5TN-01 19 7533816 7533816 G A ARHGEF18 Missense_Mutation p.E1008K 0.36 tolerated(0.07) probably_damaging(0.932) TCGA-B7-A5TN-01 1 103540182 103540182 C A COL11A1 Missense_Mutation p.V215F 0.09 probably_damaging(0.999) TCGA-B7-A5TN-01 1 152286006 152286006 C G FLG Missense_Mutation p.E452D 0.17 probably_damaging(0.956) TCGA-B7-A5TN-01 1 173526566 173526566 C T SLC9C2 Silent p.T376T 0.19 TCGA-B7-A5TN-01 1 201356225 201356225 G C LAD1 Missense_Mutation p.I88M 0.52 deleterious(0.04) benign(0.21) TCGA-B7-A5TN-01 1 233749934 233749934 C T KCNK1 Missense_Mutation p.A6V 0.27 deleterious_low_confidence(0.01) benign(0.335) TCGA-B7-A5TN-01 1 237729867 237729867 C A RYR2 Missense_Mutation p.A1072E 0.19 benign(0.115) TCGA-B7-A5TN-01 1 24664230 24664230 G A GRHL3 Missense_Mutation p.R264Q 0.27 tolerated(0.17) possibly_damaging(0.851) TCGA-B7-A5TN-01 1 248084435 248084435 G A OR2T8 Missense_Mutation p.G39D 0.21 deleterious(0) possibly_damaging(0.703) TCGA-B7-A5TN-01 1 39797927 39797927 G A MACF1 Intron 0.23 TCGA-B7-A5TN-01 20 56094356 56094357 TT - CTCFL Frame_Shift_Del p.K277Nfs*5 0.13 TCGA-B7-A5TN-01 21 37736421 37736421 G A MORC3 Missense_Mutation p.A495T 0.55 tolerated(0.72) benign(0) TCGA-B7-A5TN-01 21 47552453 47552453 G A COL6A2 Missense_Mutation p.R1016H 0.73 deleterious(0) probably_damaging(0.996) TCGA-B7-A5TN-01 22 31487081 31487081 C G SMTN Missense_Mutation p.P358A 0.23 tolerated(0.17) benign(0.001) TCGA-B7-A5TN-01 2 107041104 107041104 T A RGPD3 Nonsense_Mutation p.K1107* 0.16 TCGA-B7-A5TN-01 2 107041119 107041119 T C RGPD3 Missense_Mutation p.R1102G 0.16 deleterious(0) probably_damaging(0.995) TCGA-B7-A5TN-01 2 233274324 233274324 C T ALPPL2 Silent p.D447D 0.17 TCGA-B7-A5TN-01 2 50170858 50170858 C T NRXN1 Silent p.P1440P 0.41 TCGA-B7-A5TN-01 3 111842279 111842279 C G GCSAM 3'UTR 0.37 TCGA-B7-A5TN-01 3 126216937 126216937 G A UROC1 Silent p.D525D 0.16 TCGA-B7-A5TN-01 3 133098807 133098807 G A TMEM108 Silent p.P84P 0.12 TCGA-B7-A5TN-01 3 136057273 136057273 C T STAG1 Missense_Mutation p.R1231Q 0.21 deleterious_low_confidence(0.03) benign(0.234) TCGA-B7-A5TN-01 3 137787139 137787139 C T DZIP1L Silent p.L562L 0.10 TCGA-B7-A5TN-01 3 160000343 160000343 G C IFT80 Missense_Mutation p.A480G 0.08 deleterious(0) possibly_damaging(0.697) TCGA-B7-A5TN-01 3 194080743 194080743 G A LRRC15 Missense_Mutation p.R350W 0.23 deleterious(0.02) possibly_damaging(0.663) TCGA-B7-A5TN-01 3 37284969 37284969 G C GOLGA4 5'UTR 0.60 TCGA-B7-A5TN-01 4 100515932 100515932 G A MTTP Silent p.L267L 0.09 TCGA-B7-A5TN-01 4 106155173 106155173 G T TET2 Missense_Mutation p.C25F 0.47 deleterious(0) possibly_damaging(0.794) TCGA-B7-A5TN-01 4 113569662 113569662 C A LARP7 Intron 0.52 TCGA-B7-A5TN-01 4 123664305 123664305 G C BBS12 Missense_Mutation p.E420Q 0.41 deleterious(0.02) possibly_damaging(0.899) TCGA-B7-A5TN-01 4 62813854 62813854 T G LPHN3 Missense_Mutation p.W821G 0.21 deleterious(0) probably_damaging(1) TCGA-B7-A5TN-01 4 94436522 94436522 C T GRID2 Missense_Mutation p.S718L 0.28 tolerated(0.41) benign(0.004) TCGA-B7-A5TN-01 5 110710554 110710554 A - CAMK4 Frame_Shift_Del p.I85Sfs*2 0.32 TCGA-B7-A5TN-01 5 127681048 127681048 C T FBN2 Splice_Site p.X1073_splice 0.23 TCGA-B7-A5TN-01 5 132198130 132198130 G A GDF9 Silent p.V172V 0.10 TCGA-B7-A5TN-01 5 76028577 76028577 G C F2R Missense_Mutation p.R176P 0.22 deleterious(0) probably_damaging(0.997) TCGA-B7-A5TN-01 5 78326751 78326751 C A DMGDH Missense_Mutation p.A530S 0.55 deleterious(0.03) benign(0.002) TCGA-B7-A5TN-01 6 107956476 107956476 G A SOBP Missense_Mutation p.A810T 0.05 tolerated(0.12) possibly_damaging(0.823) TCGA-B7-A5TN-01 6 111696187 111696187 G A REV3L Missense_Mutation p.S1124F 0.12 deleterious(0) probably_damaging(0.995) TCGA-B7-A5TN-01 6 116565243 116565243 A T NT5DC1 3'UTR 0.28 TCGA-B7-A5TN-01 6 152646247 152646247 A T SYNE1 Missense_Mutation p.V5210E 0.32 possibly_damaging(0.489) TCGA-B7-A5TN-01 6 159692441 159692441 C T FNDC1 Silent p.Y1884Y 0.45 TCGA-B7-A5TN-01 6 161567587 161567587 G A AGPAT4 Missense_Mutation p.S271L 0.23 deleterious(0) benign(0.167) TCGA-B7-A5TN-01 6 74135216 74135216 A G MB21D1 Missense_Mutation p.S435P 0.32 deleterious(0) probably_damaging(1) TCGA-B7-A5TN-01 6 90097230 90097230 C T RRAGD Silent p.S76S 0.04 TCGA-B7-A5TN-01 7 40132790 40132790 G A CDK13 Silent p.A1214A 0.24 TCGA-B7-A5TN-01 7 88389265 88389265 G T ZNF804B 5'UTR 0.29 TCGA-B7-A5TN-01 8 113649203 113649203 G T CSMD3 Silent p.G1186G 0.15 TCGA-B7-A5TN-01 8 1624759 1624759 G T DLGAP2 Missense_Mutation p.G675W 0.20 deleterious(0) probably_damaging(1) TCGA-B7-A5TN-01 8 25287292 25287292 A G KCTD9 3'UTR 0.19 TCGA-B7-A5TN-01 8 29102864 29102864 G C KIF13B Missense_Mutation p.R50G 0.40 deleterious(0) possibly_damaging(0.66) TCGA-B7-A5TN-01 8 52258490 52258490 G C PXDNL Missense_Mutation p.Q1307E 0.27 tolerated(0.1) benign(0.039) TCGA-B7-A5TN-01 8 87076473 87076473 G T PSKH2 Nonsense_Mutation p.Y191* 0.19 TCGA-B7-A5TN-01 9 116930888 116930888 G A COL27A1 Silent p.A351A 0.52 TCGA-B7-A5TN-01 9 125486292 125486292 C A OR1L4 Missense_Mutation p.S8R 0.13 deleterious(0.05) benign(0.002) TCGA-B7-A5TN-01 9 127566440 127566440 C T OLFML2A Silent p.S329S 0.10 TCGA-B7-A5TN-01 X 102529210 102529210 G T TCEAL5 Silent p.A94A 0.10 TCGA-B7-A5TN-01 X 138698452 138698452 G T MCF2 Missense_Mutation p.P454T 0.21 tolerated(0.06) possibly_damaging(0.721) TCGA-B7-A5TN-01 X 18972521 18972521 T C PHKA2 Missense_Mutation p.T30A 0.39 deleterious(0) probably_damaging(0.981) TCGA-B7-A5TN-01 X 41205632 41205632 C A DDX3X Nonsense_Mutation p.S489* 0.77 TCGA-BR-4183-01 11 1016412 1016414 GAG - MUC6 In_Frame_Del p.S2130del 0.34 TCGA-BR-4183-01 11 16340111 16340111 C T SOX6 Missense_Mutation p.R109H 0.13 deleterious(0.03) probably_damaging(0.999) TCGA-BR-4183-01 11 3114795 3114795 C T OSBPL5 Silent p.T636T 0.12 TCGA-BR-4183-01 11 56184928 56184928 G T OR5R1 Missense_Mutation p.Q261K 0.12 deleterious(0.02) probably_damaging(0.994) TCGA-BR-4183-01 11 65350742 65350742 C T EHBP1L1 Missense_Mutation p.R867C 0.24 deleterious(0.01) benign(0.022) TCGA-BR-4183-01 12 118588693 118588693 G C TAOK3 3'UTR 0.31 TCGA-BR-4183-01 12 3048729 3048729 T C TULP3 Intron 0.26 TCGA-BR-4183-01 12 34179403 34179404 - T ALG10 Frame_Shift_Ins p.V328Cfs*18 0.13 TCGA-BR-4183-01 12 45795715 45795715 G A ANO6 Silent p.T529T 0.10 TCGA-BR-4183-01 12 7475048 7475048 G A ACSM4 Missense_Mutation p.G346R 0.09 deleterious(0) probably_damaging(0.977) TCGA-BR-4183-01 13 32745282 32745282 G A FRY Missense_Mutation p.D676N 0.15 deleterious(0) probably_damaging(0.929) TCGA-BR-4183-01 14 22102168 22102168 C T OR10G2 Silent p.A277A 0.15 TCGA-BR-4183-01 14 55474071 55474071 A C WDHD1 Missense_Mutation p.L176R 0.13 deleterious(0) possibly_damaging(0.897) TCGA-BR-4183-01 14 57268588 57268588 A C OTX2 Silent p.A253A 0.10 TCGA-BR-4183-01 14 60976532 60976532 C T SIX6 Missense_Mutation p.T139M 0.19 deleterious(0) probably_damaging(0.998) TCGA-BR-4183-01 15 25972389 25972389 G A ATP10A Silent p.A255A 0.08 TCGA-BR-4183-01 15 78398116 78398116 G A CIB2 Silent p.F169F 0.10 TCGA-BR-4183-01 17 10428137 10428137 G A MYH2 Silent p.N1636N 0.19 TCGA-BR-4183-01 17 3301695 3301695 G T OR1E1 Missense_Mutation p.Q4K 0.18 tolerated(0.47) benign(0) TCGA-BR-4183-01 17 56293543 56293543 C T MKS1 Missense_Mutation p.R108H 0.13 tolerated(1) benign(0) TCGA-BR-4183-01 17 56350133 56350133 G A MPO Missense_Mutation p.R590C 0.14 deleterious(0) probably_damaging(0.999) TCGA-BR-4183-01 17 7578370 7578370 C T TP53 Splice_Site p.X187_splice 0.21 TCGA-BR-4183-01 19 21991815 21991815 A G ZNF43 Missense_Mutation p.Y342H 0.08 deleterious(0.04) possibly_damaging(0.598) TCGA-BR-4183-01 19 43258502 43258502 A T PSG8 Missense_Mutation p.M409K 0.22 tolerated(0.15) benign(0.102) TCGA-BR-4183-01 19 44741019 44741019 C T ZNF227 3'UTR 0.09 TCGA-BR-4183-01 19 54178979 54178979 C T MIR520E RNA 0.05 TCGA-BR-4183-01 19 54502911 54502911 A G CACNG6 Missense_Mutation p.I144V 0.10 tolerated(0.17) benign(0.017) TCGA-BR-4183-01 19 757262 757262 C T MISP Missense_Mutation p.R106C 0.17 tolerated_low_confidence(0.06) probably_damaging(0.942) TCGA-BR-4183-01 19 8176646 8176646 C A FBN3 Nonsense_Mutation p.E1324* 0.12 TCGA-BR-4183-01 1 158646014 158646014 C A SPTA1 Missense_Mutation p.E343D 0.20 tolerated(0.58) benign(0.155) TCGA-BR-4183-01 1 16073526 16073526 C T TMEM82 Silent p.L308L 0.33 TCGA-BR-4183-01 1 16073527 16073527 T G TMEM82 Missense_Mutation p.L308R 0.34 deleterious(0) probably_damaging(0.973) TCGA-BR-4183-01 1 166829516 166829516 C T TADA1 Missense_Mutation p.R200Q 0.14 deleterious(0) possibly_damaging(0.66) TCGA-BR-4183-01 1 181695296 181695296 C T CACNA1E Silent p.I746I 0.20 TCGA-BR-4183-01 1 181724463 181724463 G A CACNA1E Missense_Mutation p.A1307T 0.19 deleterious(0) possibly_damaging(0.448) TCGA-BR-4183-01 1 204587180 204587180 C T LRRN2 Silent p.A647A 0.12 TCGA-BR-4183-01 1 247875662 247875662 G A OR6F1 Silent p.Y132Y 0.12 TCGA-BR-4183-01 1 248457952 248457952 T G OR2T12 Missense_Mutation p.K310T 0.12 tolerated(0.21) benign(0.002) TCGA-BR-4183-01 1 9027761 9027761 G T CA6 Silent p.L205L 0.33 TCGA-BR-4183-01 20 61513050 61513050 C T DIDO1 Missense_Mutation p.E1420K 0.09 probably_damaging(0.997) TCGA-BR-4183-01 22 19445627 19445627 G A UFD1L Silent p.D177D 0.17 TCGA-BR-4183-01 22 32017095 32017095 A G PISD Missense_Mutation p.V210A 0.23 tolerated(0.37) benign(0.146) TCGA-BR-4183-01 22 42271622 42271622 A G SREBF2 Missense_Mutation p.N427S 0.11 tolerated(0.11) possibly_damaging(0.9) TCGA-BR-4183-01 2 128922385 128922385 T G UGGT1 Missense_Mutation p.F969L 0.18 tolerated(0.99) benign(0.034) TCGA-BR-4183-01 2 179424587 179424587 T C TTN Missense_Mutation p.S28758G 0.09 TCGA-BR-4183-01 2 29268228 29268228 C T FAM179A Missense_Mutation p.R892C 0.23 tolerated(0.1) benign(0.035) TCGA-BR-4183-01 2 3749215 3749215 C T ALLC Missense_Mutation p.P322S 0.18 tolerated(0.12) benign(0.262) TCGA-BR-4183-01 2 86308050 86308050 C T POLR1A Silent p.T325T 0.09 TCGA-BR-4183-01 3 189612028 189612028 C T TP63 Nonsense_Mutation p.R594* 0.16 TCGA-BR-4183-01 3 25637920 25637920 G C RARB Missense_Mutation p.R387P 0.16 deleterious(0.02) probably_damaging(0.999) TCGA-BR-4183-01 3 48629354 48629354 C T COL7A1 Missense_Mutation p.R445Q 0.16 unknown(0) TCGA-BR-4183-01 3 49159423 49159423 C T LAMB2 Missense_Mutation p.R1626Q 0.28 tolerated(0.57) benign(0.001) TCGA-BR-4183-01 3 52824909 52824909 G A ITIH1 Silent p.R822R 0.14 TCGA-BR-4183-01 5 121188462 121188462 A C FTMT 3'UTR 0.30 TCGA-BR-4183-01 5 140553745 140553745 C T PCDHB7 Silent p.D443D 0.15 TCGA-BR-4183-01 5 171520875 171520875 C T STK10 Silent p.P365P 0.12 TCGA-BR-4183-01 6 150211239 150211239 G A RAET1E Missense_Mutation p.S43F 0.08 deleterious(0) possibly_damaging(0.899) TCGA-BR-4183-01 6 43188240 43188243 TTGT - CUL9 Frame_Shift_Del p.V2110* 0.25 TCGA-BR-4183-01 7 100481989 100481989 C T SRRT Missense_Mutation p.A253V 0.09 tolerated(0.57) probably_damaging(0.999) TCGA-BR-4183-01 7 127670639 127670639 G A LRRC4 Missense_Mutation p.L19F 0.08 tolerated_low_confidence(0.05) benign(0.003) TCGA-BR-4183-01 7 138447716 138447716 C T ATP6V0A4 Missense_Mutation p.A116T 0.09 tolerated(0.3) benign(0.016) TCGA-BR-4183-01 7 30695259 30695259 G A CRHR2 Silent p.P357P 0.12 TCGA-BR-4183-01 7 47930282 47930282 C T PKD1L1 Missense_Mutation p.A845T 0.12 tolerated(0.58) benign(0.002) TCGA-BR-4183-01 9 6015394 6015394 C T RANBP6 Missense_Mutation p.A72T 0.15 deleterious(0) benign(0.043) TCGA-BR-4183-01 X 119575715 119575715 C G LAMP2 Missense_Mutation p.W321C 0.13 deleterious(0) probably_damaging(0.997) TCGA-BR-4183-01 X 131212786 131212786 T C FRMD7 Missense_Mutation p.D420G 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-BR-4183-01 X 135764986 135764986 G T ARHGEF6 Nonsense_Mutation p.Y470* 0.08 TCGA-BR-4183-01 X 148568478 148568478 G A IDS Silent p.S175S 0.08 TCGA-BR-4183-01 X 19725084 19725084 C T SH3KBP1 Missense_Mutation p.R102Q 0.18 tolerated(0.3) probably_damaging(0.989) TCGA-BR-4183-01 X 3229245 3229245 G A MXRA5 Silent p.D2333D 0.18 TCGA-BR-4183-01 X 75004861 75004861 C T MAGEE2 Missense_Mutation p.R9H 0.10 deleterious_low_confidence(0.02) benign(0.271) TCGA-BR-4183-01 X 79975125 79975125 C T BRWD3 Missense_Mutation p.G636E 0.07 tolerated(0.07) possibly_damaging(0.621) TCGA-BR-4183-01 X 92926799 92926799 T G NAP1L3 Missense_Mutation p.K502T 0.16 deleterious_low_confidence(0) benign(0.001) TCGA-BR-4184-01 10 100021879 100021879 A G LOXL4 Silent p.S123S 0.31 TCGA-BR-4184-01 10 100152769 100152769 C - PYROXD2 Frame_Shift_Del p.G286Afs*31 0.22 TCGA-BR-4184-01 10 100155209 100155209 C T PYROXD2 Missense_Mutation p.G209D 0.29 tolerated(0.06) possibly_damaging(0.714) TCGA-BR-4184-01 10 101157412 101157412 C T GOT1 Silent p.K378K 0.25 TCGA-BR-4184-01 10 101560202 101560202 C T ABCC2 Missense_Mutation p.A364V 0.05 deleterious(0.03) benign(0.25) TCGA-BR-4184-01 10 102054822 102054822 C T PKD2L1 Missense_Mutation p.R472H 0.26 deleterious(0.02) probably_damaging(0.992) TCGA-BR-4184-01 10 102283617 102283617 G A NDUFB8 Missense_Mutation p.R180W 0.26 deleterious(0.01) benign(0.065) TCGA-BR-4184-01 10 102732589 102732590 TG - SEMA4G 5'Flank 0.26 TCGA-BR-4184-01 10 102896498 102896498 T C TLX1 Missense_Mutation p.I274T 0.25 deleterious(0) benign(0.416) TCGA-BR-4184-01 10 103294488 103294488 C T BTRC Missense_Mutation p.R390C 0.27 tolerated(0.1) probably_damaging(0.956) TCGA-BR-4184-01 10 104119942 104119942 C T GBF1 Silent p.G393G 0.25 TCGA-BR-4184-01 10 1043150 1043150 C T GTPBP4 Missense_Mutation p.R155C 0.26 deleterious(0) possibly_damaging(0.893) TCGA-BR-4184-01 10 104679242 104679242 C T CNNM2 Silent p.D335D 0.22 TCGA-BR-4184-01 10 105209370 105209370 G A CALHM2 Missense_Mutation p.A110V 0.16 deleterious(0) possibly_damaging(0.882) TCGA-BR-4184-01 10 105331403 105331403 C T NEURL1 Missense_Mutation p.P158L 0.36 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 10 106130764 106130764 G A CCDC147 Missense_Mutation p.E348K 0.29 deleterious(0.04) possibly_damaging(0.468) TCGA-BR-4184-01 10 106960891 106960891 T C SORCS3 Missense_Mutation p.V714A 0.09 deleterious(0.03) possibly_damaging(0.55) TCGA-BR-4184-01 10 113913080 113913080 C T GPAM 3'UTR 0.27 TCGA-BR-4184-01 10 114173039 114173039 C T ACSL5 Nonsense_Mutation p.R409* 0.10 TCGA-BR-4184-01 10 115334090 115334090 A C HABP2 Missense_Mutation p.N50T 0.20 tolerated(0.45) benign(0.002) TCGA-BR-4184-01 10 116045881 116045881 C T VWA2 Missense_Mutation p.A394V 0.28 tolerated(1) benign(0.008) TCGA-BR-4184-01 10 117075167 117075167 G A ATRNL1 Missense_Mutation p.M986I 0.20 tolerated_low_confidence(0.2) benign(0) TCGA-BR-4184-01 10 118215275 118215275 C T PNLIPRP3 Silent p.G166G 0.24 TCGA-BR-4184-01 10 118639453 118639453 G A ENO4 Missense_Mutation p.R243H 0.29 deleterious(0.03) possibly_damaging(0.715) TCGA-BR-4184-01 10 119043322 119043322 C T PDZD8 Silent p.T974T 0.05 TCGA-BR-4184-01 10 121275054 121275054 C T RGS10 Silent p.P122P 0.44 TCGA-BR-4184-01 10 121286870 121286870 G A RGS10 Missense_Mutation p.A39V 0.23 deleterious(0) benign(0.113) TCGA-BR-4184-01 10 12136162 12136162 G A DHTKD1 Missense_Mutation p.R417H 0.20 tolerated(0.07) benign(0.333) TCGA-BR-4184-01 10 121591566 121591566 C T MCMBP Missense_Mutation p.S587N 0.09 tolerated(0.2) benign(0.119) TCGA-BR-4184-01 10 121658326 121658326 G A SEC23IP Missense_Mutation p.R184H 0.18 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 10 12292370 12292370 G A CDC123 3'UTR 0.44 TCGA-BR-4184-01 10 123846012 123846012 C T TACC2 Missense_Mutation p.P1333S 0.12 possibly_damaging(0.848) TCGA-BR-4184-01 10 124268280 124268280 G A HTRA1 Missense_Mutation p.A372T 0.24 tolerated(0.6) benign(0.002) TCGA-BR-4184-01 10 124457495 124457495 T - C10orf120 Frame_Shift_Del p.K254Nfs*3 0.23 TCGA-BR-4184-01 10 124591735 124591735 G T CUZD1 3'UTR 0.15 TCGA-BR-4184-01 10 125528124 125528124 C T CPXM2 Missense_Mutation p.R406H 0.21 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 10 125780848 125780848 T C CHST15 Missense_Mutation p.Q424R 0.39 deleterious(0.04) benign(0.062) TCGA-BR-4184-01 10 126631374 126631374 T C ZRANB1 Silent p.C104C 0.12 TCGA-BR-4184-01 10 126671767 126671767 G A ZRANB1 Silent p.T524T 0.09 TCGA-BR-4184-01 10 126691653 126691653 G A CTBP2 Silent p.G618G 0.11 TCGA-BR-4184-01 10 127414270 127414270 G A EDRF1 Missense_Mutation p.A219T 0.20 deleterious(0.01) probably_damaging(0.981) TCGA-BR-4184-01 10 127424342 127424342 C T EDRF1 Missense_Mutation p.P543S 0.22 tolerated(0.25) possibly_damaging(0.506) TCGA-BR-4184-01 10 127505104 127505104 A G UROS Intron 0.26 TCGA-BR-4184-01 10 127540971 127540971 C T DHX32 Silent p.T414T 0.12 TCGA-BR-4184-01 10 127697110 127697110 G A FANK1 Silent p.T280T 0.23 TCGA-BR-4184-01 10 127697969 127697969 A - FANK1 Frame_Shift_Del p.K336Sfs*25 0.25 TCGA-BR-4184-01 10 12833171 12833171 G A CAMK1D Missense_Mutation p.A194T 0.18 deleterious(0.03) benign(0.117) TCGA-BR-4184-01 10 128973888 128973888 C T FAM196A Missense_Mutation p.A258T 0.27 tolerated(0.62) benign(0.005) TCGA-BR-4184-01 10 131973264 131973264 C T GLRX3 Missense_Mutation p.R290W 0.33 deleterious(0) probably_damaging(0.998) TCGA-BR-4184-01 10 13213246 13213246 C T MCM10 Missense_Mutation p.T111M 0.10 deleterious(0) possibly_damaging(0.781) TCGA-BR-4184-01 10 132944908 132944908 C T TCERG1L Silent p.T350T 0.32 TCGA-BR-4184-01 10 133930823 133930823 C T JAKMIP3 Silent p.G126G 0.29 TCGA-BR-4184-01 10 133954021 133954021 G A JAKMIP3 Missense_Mutation p.V471I 0.64 tolerated(1) benign(0.001) TCGA-BR-4184-01 10 134165170 134165170 C T LRRC27 Missense_Mutation p.A329V 0.08 tolerated(0.37) probably_damaging(0.939) TCGA-BR-4184-01 10 134463965 134463965 C T INPP5A Nonsense_Mutation p.R88* 0.07 TCGA-BR-4184-01 10 134623955 134623955 G A TTC40 Missense_Mutation p.A2541V 0.31 tolerated_low_confidence(0.13) benign(0.045) TCGA-BR-4184-01 10 134648190 134648190 C T TTC40 Silent p.P2278P 0.33 TCGA-BR-4184-01 10 135010567 135010567 C T KNDC1 Silent p.C580C 0.31 TCGA-BR-4184-01 10 135038246 135038246 A G KNDC1 Missense_Mutation p.Y1701C 0.20 tolerated(0.06) benign(0.014) TCGA-BR-4184-01 10 135126389 135126389 G - ZNF511 3'UTR 0.10 TCGA-BR-4184-01 10 135211971 135211971 A - MTG1 Frame_Shift_Del p.N107Mfs*8 0.10 TCGA-BR-4184-01 10 135439043 135439043 G A FRG2B Missense_Mutation p.H133Y 0.31 tolerated(0.08) possibly_damaging(0.623) TCGA-BR-4184-01 10 16970170 16970170 G A CUBN Missense_Mutation p.A2086V 0.20 deleterious(0.01) probably_damaging(1) TCGA-BR-4184-01 10 18803962 18803962 C T CACNB2 Intron 0.10 TCGA-BR-4184-01 10 18816561 18816561 G A CACNB2 Missense_Mutation p.R330H 0.29 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 10 18957477 18957477 T C ARL5B Silent p.V42V 0.22 TCGA-BR-4184-01 10 21785730 21785730 T A CASC10 Missense_Mutation p.E5V 0.29 deleterious_low_confidence(0) possibly_damaging(0.895) TCGA-BR-4184-01 10 22606821 22606821 G T COMMD3 Missense_Mutation p.D50Y 0.20 tolerated(0.06) benign(0.007) TCGA-BR-4184-01 10 22898568 22898568 C T PIP4K2A Missense_Mutation p.D75N 0.27 tolerated(0.53) benign(0.003) TCGA-BR-4184-01 10 24669946 24669946 C T KIAA1217 Missense_Mutation p.A168V 0.26 deleterious(0) probably_damaging(0.998) TCGA-BR-4184-01 10 24816953 24816953 C T KIAA1217 Missense_Mutation p.A996V 0.30 tolerated(0.05) probably_damaging(0.998) TCGA-BR-4184-01 10 25887280 25887280 G A GPR158 Missense_Mutation p.A909T 0.06 tolerated(0.09) benign(0.391) TCGA-BR-4184-01 10 25888009 25888009 C T GPR158 Missense_Mutation p.R1152C 0.20 deleterious(0.04) benign(0.39) TCGA-BR-4184-01 10 27301829 27301829 C T ANKRD26 Missense_Mutation p.M1645I 0.06 tolerated(0.72) benign(0.001) TCGA-BR-4184-01 10 27458870 27458870 T C MASTL Intron 0.28 TCGA-BR-4184-01 10 27702400 27702400 C T PTCHD3 Silent p.A260A 0.30 TCGA-BR-4184-01 10 27702950 27702950 C T PTCHD3 Missense_Mutation p.R77Q 0.28 tolerated(0.61) benign(0.417) TCGA-BR-4184-01 10 28358714 28358714 G A MPP7 Silent p.G397G 0.32 TCGA-BR-4184-01 10 29580930 29580930 G A LYZL1 Missense_Mutation p.G91E 0.22 deleterious(0.05) benign(0.244) TCGA-BR-4184-01 10 30748327 30748327 G A MAP3K8 Silent p.P390P 0.24 TCGA-BR-4184-01 10 3124630 3124630 G A PFKP Missense_Mutation p.A55T 0.17 deleterious(0.03) possibly_damaging(0.678) TCGA-BR-4184-01 10 33496560 33496560 C T NRP1 Missense_Mutation p.E567K 0.24 deleterious(0.01) probably_damaging(0.958) TCGA-BR-4184-01 10 34626277 34626277 C T PARD3 Missense_Mutation p.R832H 0.26 tolerated(0.07) possibly_damaging(0.523) TCGA-BR-4184-01 10 34671594 34671594 C T PARD3 Missense_Mutation p.A425T 0.29 tolerated(0.41) benign(0.001) TCGA-BR-4184-01 10 35317808 35317808 G T CUL2 Missense_Mutation p.A535E 0.30 deleterious(0) probably_damaging(0.986) TCGA-BR-4184-01 10 38651206 38651206 C T HSD17B7P2 RNA 0.18 TCGA-BR-4184-01 10 38651254 38651254 G A HSD17B7P2 RNA 0.20 TCGA-BR-4184-01 10 42832378 42832378 C T RP11-313J2.1 RNA 0.22 TCGA-BR-4184-01 10 430000 430000 G A DIP2C Nonsense_Mutation p.R615* 0.25 TCGA-BR-4184-01 10 43326400 43326400 G A BMS1 Silent p.E1235E 0.21 TCGA-BR-4184-01 10 43606686 43606686 C T RET Missense_Mutation p.A432V 0.35 tolerated(0.11) benign(0.046) TCGA-BR-4184-01 10 44111987 44111987 G A ZNF485 Missense_Mutation p.A166T 0.16 tolerated(0.18) benign(0.339) TCGA-BR-4184-01 10 45467036 45467036 C T RASSF4 Intron 0.33 TCGA-BR-4184-01 10 45480314 45480314 G A RASSF4 Missense_Mutation p.A143T 0.16 deleterious(0.03) possibly_damaging(0.558) TCGA-BR-4184-01 10 45486467 45486467 G A RASSF4 Missense_Mutation p.A253T 0.11 deleterious(0.01) possibly_damaging(0.752) TCGA-BR-4184-01 10 46224380 46224380 A G FAM21C Missense_Mutation p.D66G 0.10 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 10 46999760 46999760 G A GPRIN2 Missense_Mutation p.A294T 0.10 deleterious(0.04) benign(0.129) TCGA-BR-4184-01 10 48389508 48389508 G A RBP3 Missense_Mutation p.A457V 0.34 tolerated(0.06) probably_damaging(0.913) TCGA-BR-4184-01 10 48414241 48414241 G A GDF2 Silent p.S209S 0.25 TCGA-BR-4184-01 10 50701183 50701183 C T ERCC6 Missense_Mutation p.G601S 0.26 deleterious(0) possibly_damaging(0.751) TCGA-BR-4184-01 10 50723521 50723521 C T ERCC6-PGBD3 Missense_Mutation p.R1015H 0.22 deleterious_low_confidence(0.04) unknown(0) TCGA-BR-4184-01 10 50819068 50819068 G A SLC18A3 Silent p.T94T 0.29 TCGA-BR-4184-01 10 50819793 50819793 T C SLC18A3 Missense_Mutation p.V336A 0.22 deleterious(0.01) benign(0.217) TCGA-BR-4184-01 10 51087787 51087787 G A PARG Silent p.C155C 0.17 TCGA-BR-4184-01 10 52390830 52390830 G A RP11-50E11.3 RNA 0.37 TCGA-BR-4184-01 10 5541428 5541428 C T CALML5 5'UTR 0.23 TCGA-BR-4184-01 10 55582282 55582282 G A PCDH15 Missense_Mutation p.A1737V 0.17 tolerated_low_confidence(0.14) benign(0.098) TCGA-BR-4184-01 10 5772453 5772453 T C FAM208B Missense_Mutation p.V164A 0.18 tolerated(0.64) benign(0.012) TCGA-BR-4184-01 10 5788414 5788414 G A FAM208B Silent p.V1010V 0.35 TCGA-BR-4184-01 10 61552443 61552443 T C CCDC6 3'UTR 0.26 TCGA-BR-4184-01 10 61844960 61844960 G A ANK3 Missense_Mutation p.T1267M 0.15 probably_damaging(0.995) TCGA-BR-4184-01 10 62149329 62149329 C T ANK3 5'UTR 0.39 TCGA-BR-4184-01 10 64136647 64136647 T C ZNF365 Missense_Mutation p.L232P 0.09 deleterious_low_confidence(0.01) benign(0.134) TCGA-BR-4184-01 10 64974250 64974250 T - JMJD1C Frame_Shift_Del p.D560Ifs*10 0.08 TCGA-BR-4184-01 10 64979728 64979728 G A JMJD1C Silent p.L155L 0.19 TCGA-BR-4184-01 10 69935180 69935180 A - MYPN Frame_Shift_Del p.I891* 0.19 TCGA-BR-4184-01 10 70446141 70446141 G A TET1 Missense_Mutation p.R1694H 0.17 deleterious(0) possibly_damaging(0.906) TCGA-BR-4184-01 10 70644170 70644170 G A STOX1 Silent p.L206L 0.26 TCGA-BR-4184-01 10 71017128 71017128 A G HKDC1 Missense_Mutation p.T660A 0.08 deleterious(0.02) possibly_damaging(0.904) TCGA-BR-4184-01 10 71174709 71174709 C T TACR2 Silent p.T193T 0.20 TCGA-BR-4184-01 10 71265925 71265925 G A TSPAN15 Missense_Mutation p.A222T 0.22 deleterious(0) probably_damaging(0.993) TCGA-BR-4184-01 10 72195099 72195099 G A AC022532.1 Missense_Mutation p.A16T 0.21 possibly_damaging(0.691) TCGA-BR-4184-01 10 7247845 7247845 A T SFMBT2 Missense_Mutation p.M459K 0.07 deleterious(0.03) probably_damaging(0.989) TCGA-BR-4184-01 10 7409677 7409677 C G SFMBT2 Missense_Mutation p.V124L 0.25 tolerated(0.24) benign(0.002) TCGA-BR-4184-01 10 74628488 74628488 C T MCU Missense_Mutation p.T175M 0.16 deleterious(0.03) possibly_damaging(0.75) TCGA-BR-4184-01 10 74631233 74631233 G A MCU Silent p.R252R 0.28 TCGA-BR-4184-01 10 74899444 74899444 T C ECD Missense_Mutation p.I426M 0.07 tolerated(0.32) benign(0.01) TCGA-BR-4184-01 10 75071669 75071669 C T TTC18 Missense_Mutation p.A433T 0.07 tolerated(0.17) benign(0.202) TCGA-BR-4184-01 10 75290490 75290490 C T USP54 Silent p.E473E 0.31 TCGA-BR-4184-01 10 75535516 75535516 C A FUT11 3'UTR 0.16 TCGA-BR-4184-01 10 7605039 7605039 C T ITIH5 Missense_Mutation p.A946T 0.24 tolerated_low_confidence(0.79) benign(0.016) TCGA-BR-4184-01 10 78647147 78647147 C T KCNMA1 Silent p.S1179S 0.23 TCGA-BR-4184-01 10 78709065 78709065 G A KCNMA1 Silent p.G831G 0.17 TCGA-BR-4184-01 10 79554687 79554687 C T DLG5 Silent p.P1822P 0.35 TCGA-BR-4184-01 10 83635649 83635649 C T NRG3 Missense_Mutation p.R185W 0.24 deleterious(0) probably_damaging(0.996) TCGA-BR-4184-01 10 84745044 84745044 A G NRG3 Missense_Mutation p.I592V 0.27 tolerated(0.68) benign(0.01) TCGA-BR-4184-01 10 86001151 86001151 C T LRIT1 Nonsense_Mutation p.W15* 0.56 TCGA-BR-4184-01 10 890939 890939 T - LARP4B Frame_Shift_Del p.T163Hfs*47 0.22 TCGA-BR-4184-01 10 89503193 89503193 A G PAPSS2 Missense_Mutation p.D429G 0.10 deleterious(0.01) probably_damaging(1) TCGA-BR-4184-01 10 89717713 89717713 G A PTEN Silent p.P246P 0.27 TCGA-BR-4184-01 10 90354523 90354523 T C LIPJ Silent p.G143G 0.16 TCGA-BR-4184-01 10 90366675 90366675 C T LIPJ 3'UTR 0.33 TCGA-BR-4184-01 10 93024260 93024260 C T PCGF5 Nonsense_Mutation p.R216* 0.28 TCGA-BR-4184-01 10 93600363 93600363 C T TNKS2 Missense_Mutation p.R525C 0.22 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 10 93726433 93726433 G A BTAF1 Nonsense_Mutation p.W523* 0.22 TCGA-BR-4184-01 10 95119595 95119595 C T MYOF Missense_Mutation p.A1039T 0.27 tolerated(0.24) benign(0.002) TCGA-BR-4184-01 10 95459788 95459788 T - FRA10AC1 Frame_Shift_Del p.R26Gfs*44 0.24 TCGA-BR-4184-01 10 96005833 96005833 C T PLCE1 Silent p.L851L 0.35 TCGA-BR-4184-01 10 96447543 96447543 G A CYP2C18 Missense_Mutation p.G62D 0.19 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 10 96495057 96495057 G T CYP2C18 Missense_Mutation p.M443I 0.25 deleterious(0) possibly_damaging(0.872) TCGA-BR-4184-01 10 96602642 96602642 C A CYP2C19 Missense_Mutation p.P337H 0.30 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 10 97371048 97371048 C T ALDH18A1 Missense_Mutation p.G692D 0.07 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 10 97605259 97605259 G A ENTPD1 Missense_Mutation p.R252H 0.06 deleterious(0.04) benign(0.368) TCGA-BR-4184-01 10 97816981 97816981 G A CCNJ Silent p.V239V 0.20 TCGA-BR-4184-01 10 98138803 98138803 G A TLL2 Silent p.C747C 0.22 TCGA-BR-4184-01 10 98742563 98742563 C A C10orf12 Nonsense_Mutation p.C472* 0.23 TCGA-BR-4184-01 11 101833287 101833287 T - KIAA1377 Frame_Shift_Del p.F508Lfs*33 0.15 TCGA-BR-4184-01 11 102665947 102665947 G A MMP1 Missense_Mutation p.A286V 0.26 deleterious(0) probably_damaging(0.945) TCGA-BR-4184-01 11 102987424 102987424 G A DYNC2H1 Silent p.L249L 0.18 TCGA-BR-4184-01 11 103349968 103349969 - A DYNC2H1 Frame_Shift_Ins p.N4313Kfs*? 0.17 TCGA-BR-4184-01 11 104874011 104874011 T - CASP5 Frame_Shift_Del p.N191Ifs*8 0.25 TCGA-BR-4184-01 11 10527345 10527345 G A AMPD3 Missense_Mutation p.A749T 0.34 deleterious(0.03) probably_damaging(0.998) TCGA-BR-4184-01 11 106558464 106558464 T A GUCY1A2 Missense_Mutation p.E701D 0.26 tolerated(0.18) benign(0.005) TCGA-BR-4184-01 11 107462667 107462667 G A AP000889.3 Missense_Mutation p.A62T 0.50 deleterious_low_confidence(0) probably_damaging(0.913) TCGA-BR-4184-01 11 107920682 107920682 C A CUL5 Missense_Mutation p.F100L 0.29 deleterious(0.02) possibly_damaging(0.626) TCGA-BR-4184-01 11 108013239 108013239 C T ACAT1 Missense_Mutation p.A301V 0.20 tolerated(0.15) benign(0.052) TCGA-BR-4184-01 11 108043647 108043647 C T NPAT Silent p.T688T 0.22 TCGA-BR-4184-01 11 10823131 10823131 G T EIF4G2 Intron 0.18 TCGA-BR-4184-01 11 108409786 108409786 C A EXPH5 Missense_Mutation p.K136N 0.17 deleterious(0) possibly_damaging(0.891) TCGA-BR-4184-01 11 108544239 108544239 A - DDX10 Frame_Shift_Del p.T80Hfs*2 0.23 TCGA-BR-4184-01 11 108577481 108577481 T C DDX10 Silent p.G413G 0.21 TCGA-BR-4184-01 11 110035523 110035523 G A ZC3H12C Silent p.T571T 0.09 TCGA-BR-4184-01 11 110102620 110102620 G A RDX Missense_Mutation p.R576C 0.07 deleterious(0) probably_damaging(0.997) TCGA-BR-4184-01 11 110451712 110451712 C T ARHGAP20 Missense_Mutation p.R653Q 0.38 tolerated(0.62) benign(0.001) TCGA-BR-4184-01 11 111582989 111582989 C T SIK2 Nonsense_Mutation p.R386* 0.28 TCGA-BR-4184-01 11 111956131 111956131 C T TIMM8B Missense_Mutation p.R62H 0.19 deleterious(0.01) benign(0.005) TCGA-BR-4184-01 11 112050080 112050080 G A BCO2 Silent p.P56P 0.09 TCGA-BR-4184-01 11 113651128 113651128 T C CLDN25 Missense_Mutation p.V204A 0.29 tolerated(1) benign(0) TCGA-BR-4184-01 11 114182863 114182863 C T NNMT Silent p.P153P 0.11 TCGA-BR-4184-01 11 114278293 114278293 T C RBM7 Missense_Mutation p.W189R 0.37 tolerated(0.26) benign(0.02) TCGA-BR-4184-01 11 114401373 114401373 G A NXPE1 5'UTR 0.07 TCGA-BR-4184-01 11 116661211 116661211 C T APOA5 Missense_Mutation p.R245H 0.20 tolerated(0.2) benign(0.006) TCGA-BR-4184-01 11 117253605 117253605 G T CEP164 Missense_Mutation p.E557D 0.23 deleterious(0.04) possibly_damaging(0.716) TCGA-BR-4184-01 11 117308798 117308798 G A DSCAML1 Silent p.G1475G 0.20 TCGA-BR-4184-01 11 117332302 117332302 C A DSCAML1 Missense_Mutation p.Q1152H 0.29 tolerated(0.09) benign(0.026) TCGA-BR-4184-01 11 117787928 117787928 G A TMPRSS13 Silent p.C171C 0.31 TCGA-BR-4184-01 11 118369241 118369241 G A KMT2A Missense_Mutation p.E1987K 0.16 probably_damaging(0.991) TCGA-BR-4184-01 11 118373253 118373253 A G KMT2A Missense_Mutation p.M2216V 0.16 benign(0.001) TCGA-BR-4184-01 11 118501928 118501928 G A PHLDB1 Missense_Mutation p.R611H 0.07 deleterious(0) probably_damaging(0.953) TCGA-BR-4184-01 11 118512986 118512986 G A PHLDB1 Silent p.L917L 0.24 TCGA-BR-4184-01 11 118921765 118921765 G A HYOU1 Silent p.G549G 0.17 TCGA-BR-4184-01 11 118949009 118949009 C T VPS11 Nonsense_Mutation p.R629* 0.30 TCGA-BR-4184-01 11 119054513 119054514 TA - NLRX1 3'UTR 0.17 TCGA-BR-4184-01 11 119058146 119058146 T - PDZD3 Frame_Shift_Del p.F167Lfs*17 0.28 TCGA-BR-4184-01 11 119213674 119213674 C T MFRP Silent p.S388S 0.43 TCGA-BR-4184-01 11 120317151 120317151 G A ARHGEF12 Missense_Mutation p.R462H 0.16 deleterious(0) probably_damaging(0.967) TCGA-BR-4184-01 11 121986257 121986257 C T BLID 3'UTR 0.26 TCGA-BR-4184-01 11 122650347 122650347 C T UBASH3B Missense_Mutation p.A182V 0.20 deleterious(0) probably_damaging(0.922) TCGA-BR-4184-01 11 122955287 122955287 G A CLMP Silent p.G107G 0.25 TCGA-BR-4184-01 11 123479434 123479434 C T GRAMD1B Silent p.S384S 0.22 TCGA-BR-4184-01 11 123596942 123596942 G A ZNF202 Silent p.C570C 0.17 TCGA-BR-4184-01 11 123676505 123676505 C T OR6M1 Missense_Mutation p.A185T 0.17 deleterious(0.01) possibly_damaging(0.718) TCGA-BR-4184-01 11 123900389 123900389 G A OR10G8 Silent p.A20A 0.19 TCGA-BR-4184-01 11 124252940 124252940 C T OR8B2 Silent p.R100R 0.24 TCGA-BR-4184-01 11 124266483 124266483 C T OR8B3 Silent p.A255A 0.29 TCGA-BR-4184-01 11 124310510 124310510 C T OR8B8 Missense_Mutation p.A158T 0.27 deleterious_low_confidence(0.02) benign(0.077) TCGA-BR-4184-01 11 124623849 124623849 G A ESAM Missense_Mutation p.A289V 0.33 deleterious(0) probably_damaging(0.998) TCGA-BR-4184-01 11 124624540 124624540 T C ESAM Missense_Mutation p.T243A 0.24 tolerated(0.06) benign(0.196) TCGA-BR-4184-01 11 124735609 124735609 C T ROBO3 Missense_Mutation p.P46S 0.33 tolerated_low_confidence(0.13) benign(0.11) TCGA-BR-4184-01 11 124749437 124749437 G T ROBO3 Missense_Mutation p.K1254N 0.22 deleterious_low_confidence(0) benign(0.425) TCGA-BR-4184-01 11 124955002 124955002 C T SLC37A2 Silent p.Y405Y 0.30 TCGA-BR-4184-01 11 125853941 125853941 T C CDON Missense_Mutation p.T941A 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-BR-4184-01 11 126144908 126144908 C T FOXRED1 Missense_Mutation p.A208V 0.21 deleterious(0) probably_damaging(0.992) TCGA-BR-4184-01 11 1281031 1281031 G A MUC5B Missense_Mutation p.V5587I 0.30 unknown(0) TCGA-BR-4184-01 11 128350146 128350146 G A ETS1 Missense_Mutation p.R355C 0.30 deleterious(0.01) probably_damaging(0.997) TCGA-BR-4184-01 11 128773396 128773396 G T C11orf45 Silent p.A49A 0.20 TCGA-BR-4184-01 11 128993351 128993351 C T ARHGAP32 Missense_Mutation p.G131D 0.24 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 11 129722528 129722528 G A TMEM45B Missense_Mutation p.A51T 0.25 tolerated(0.25) benign(0.009) TCGA-BR-4184-01 11 129740016 129740016 C T NFRKB Silent p.T993T 0.08 TCGA-BR-4184-01 11 129817095 129817095 C T PRDM10 Silent p.T155T 0.11 TCGA-BR-4184-01 11 130079819 130079819 G A ST14 3'UTR 0.50 TCGA-BR-4184-01 11 130108387 130108387 G A ZBTB44 Nonsense_Mutation p.R407* 0.28 TCGA-BR-4184-01 11 130341117 130341117 G A ADAMTS15 Silent p.T639T 0.26 TCGA-BR-4184-01 11 133791085 133791085 C T IGSF9B Silent p.T845T 0.17 TCGA-BR-4184-01 11 133794728 133794728 G A IGSF9B Silent p.G702G 0.17 TCGA-BR-4184-01 11 13402723 13402723 G A ARNTL Silent p.S512S 0.27 TCGA-BR-4184-01 11 134240273 134240273 G A GLB1L2 Missense_Mutation p.A399T 0.26 tolerated(0.15) benign(0.019) TCGA-BR-4184-01 11 134244570 134244570 G A GLB1L2 Silent p.T594T 0.17 TCGA-BR-4184-01 11 14276113 14276113 G A SPON1 RNA 0.17 TCGA-BR-4184-01 11 16837748 16837748 C T PLEKHA7 Missense_Mutation p.A644T 0.38 deleterious(0.03) probably_damaging(0.988) TCGA-BR-4184-01 11 16892710 16892710 C T PLEKHA7 Missense_Mutation p.A81T 0.28 tolerated(1) benign(0.001) TCGA-BR-4184-01 11 1718528 1718528 G A KRTAP5-6 Missense_Mutation p.G18D 0.08 unknown(0) TCGA-BR-4184-01 11 18048170 18048170 G A TPH1 Missense_Mutation p.R224C 0.16 tolerated(0.22) benign(0.001) TCGA-BR-4184-01 11 18636593 18636593 G A SPTY2D1 Nonsense_Mutation p.R410* 0.10 TCGA-BR-4184-01 11 18722705 18722705 G A TMEM86A Missense_Mutation p.A83T 0.27 deleterious(0.01) probably_damaging(0.991) TCGA-BR-4184-01 11 20077375 20077375 G A NAV2 Missense_Mutation p.S1591N 0.17 deleterious(0.04) probably_damaging(0.989) TCGA-BR-4184-01 11 27721055 27721055 G A BDNF Intron 0.29 TCGA-BR-4184-01 11 30601840 30601840 C T MPPED2 Silent p.T27T 0.24 TCGA-BR-4184-01 11 31284433 31284433 C T DCDC1 3'UTR 0.31 TCGA-BR-4184-01 11 32615446 32615446 G A EIF3M Missense_Mutation p.G190R 0.26 tolerated(0.13) benign(0.236) TCGA-BR-4184-01 11 32637520 32637520 T - CCDC73 Frame_Shift_Del p.E448Kfs*5 0.32 TCGA-BR-4184-01 11 32875180 32875180 C T PRRG4 3'UTR 0.33 TCGA-BR-4184-01 11 32975681 32975681 C T QSER1 Missense_Mutation p.R1357C 0.20 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 11 33120306 33120306 C T CSTF3 Missense_Mutation p.R353H 0.14 deleterious(0.04) benign(0.08) TCGA-BR-4184-01 11 33881013 33881013 G A LMO2 Silent p.C191C 0.36 TCGA-BR-4184-01 11 34218942 34218942 G A ABTB2 Missense_Mutation p.R392W 0.22 deleterious(0) probably_damaging(0.953) TCGA-BR-4184-01 11 34515211 34515211 C T ELF5 Missense_Mutation p.R67H 0.16 tolerated(0.75) benign(0.007) TCGA-BR-4184-01 11 34680177 34680177 C T EHF Silent p.G257G 0.16 TCGA-BR-4184-01 11 34988196 34988196 C A PDHX Silent p.L217L 0.25 TCGA-BR-4184-01 11 34988232 34988232 C T PDHX Silent p.T229T 0.23 TCGA-BR-4184-01 11 36250736 36250736 C T LDLRAD3 Missense_Mutation p.P276L 0.22 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BR-4184-01 11 36250849 36250849 G A LDLRAD3 Missense_Mutation p.V314M 0.12 tolerated_low_confidence(0.2) benign(0.001) TCGA-BR-4184-01 11 36595270 36595270 G A RAG1 Missense_Mutation p.G139D 0.26 tolerated_low_confidence(0.32) benign(0.015) TCGA-BR-4184-01 11 36680751 36680752 - TG C11orf74 3'UTR 0.17 TCGA-BR-4184-01 11 3733673 3733673 G A NUP98 Intron 0.24 TCGA-BR-4184-01 11 3845179 3845179 C T PGAP2 Missense_Mutation p.R139C 0.09 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 11 40136706 40136706 T C LRRC4C Silent p.T379T 0.26 TCGA-BR-4184-01 11 43513699 43513699 G A TTC17 Missense_Mutation p.V1094I 0.26 tolerated(1) benign(0.299) TCGA-BR-4184-01 11 4389392 4389392 C T OR52B4 Missense_Mutation p.S45N 0.15 tolerated(0.07) benign(0.029) TCGA-BR-4184-01 11 44099449 44099449 G A ACCS Missense_Mutation p.A237T 0.17 tolerated(0.07) possibly_damaging(0.517) TCGA-BR-4184-01 11 44931414 44931414 C T TSPAN18 Silent p.C74C 0.21 TCGA-BR-4184-01 11 45931824 45931824 T C PEX16 Intron 0.16 TCGA-BR-4184-01 11 45959804 45959804 G A PHF21A Silent p.C503C 0.23 TCGA-BR-4184-01 11 4608901 4608901 G A OR52I2 Missense_Mutation p.A287T 0.26 deleterious(0.01) possibly_damaging(0.686) TCGA-BR-4184-01 11 46408103 46408103 G A CHRM4 Missense_Mutation p.A2V 0.23 tolerated_low_confidence(0.3) benign(0.005) TCGA-BR-4184-01 11 46419227 46419227 G A AMBRA1 Nonsense_Mutation p.R1134* 0.40 TCGA-BR-4184-01 11 46637365 46637365 C T HARBI1 Missense_Mutation p.M141I 0.22 tolerated(0.42) benign(0.001) TCGA-BR-4184-01 11 46694057 46694057 C T ATG13 3'UTR 0.56 TCGA-BR-4184-01 11 4674699 4674699 G A OR51E1 Missense_Mutation p.A315T 0.33 tolerated(0.68) benign(0) TCGA-BR-4184-01 11 46797803 46797803 A G CKAP5 Splice_Site p.X997_splice 0.09 TCGA-BR-4184-01 11 46880599 46880599 G A LRP4 Nonsense_Mutation p.R1885* 0.20 TCGA-BR-4184-01 11 46916311 46916311 G A LRP4 Missense_Mutation p.R457C 0.24 deleterious(0.03) possibly_damaging(0.872) TCGA-BR-4184-01 11 47188378 47188378 C T ARFGAP2 Missense_Mutation p.R422H 0.25 deleterious(0) possibly_damaging(0.455) TCGA-BR-4184-01 11 47282972 47282972 G A NR1H3 Missense_Mutation p.R227H 0.36 deleterious(0.01) benign(0.422) TCGA-BR-4184-01 11 47367812 47367812 G A MYBPC3 Missense_Mutation p.R346C 0.20 deleterious(0) possibly_damaging(0.893) TCGA-BR-4184-01 11 48145282 48145282 G A PTPRJ Missense_Mutation p.S245N 0.33 tolerated(0.22) benign(0.013) TCGA-BR-4184-01 11 49179535 49179535 T - FOLH1 Frame_Shift_Del p.S501Vfs*12 0.26 TCGA-BR-4184-01 11 49598046 49598046 C A RP11-707M1.1 RNA 0.32 TCGA-BR-4184-01 11 4967774 4967774 A G OR51A4 Missense_Mutation p.V186A 0.23 deleterious(0.04) possibly_damaging(0.895) TCGA-BR-4184-01 11 5373588 5373588 T C OR51B6 Missense_Mutation p.F284S 0.25 deleterious(0) benign(0.421) TCGA-BR-4184-01 11 55110982 55110982 A C OR4A16 Missense_Mutation p.E102D 0.31 tolerated_low_confidence(0.19) benign(0.016) TCGA-BR-4184-01 11 55136066 55136066 C T OR4A15 Missense_Mutation p.A236V 0.07 tolerated_low_confidence(1) benign(0.005) TCGA-BR-4184-01 11 55339888 55339888 C T OR4C16 Silent p.C95C 0.21 TCGA-BR-4184-01 11 55563305 55563305 A - OR5D14 Frame_Shift_Del p.S93Afs*8 0.25 TCGA-BR-4184-01 11 5566215 5566215 C T OR52H1 Missense_Mutation p.R180H 0.10 tolerated(0.5) benign(0.02) TCGA-BR-4184-01 11 55735774 55735774 T G OR10AG1 Missense_Mutation p.N56H 0.07 deleterious(0.04) benign(0.354) TCGA-BR-4184-01 11 55735781 55735781 A G OR10AG1 Silent p.F53F 0.07 TCGA-BR-4184-01 11 55761731 55761731 G A OR5F1 Missense_Mutation p.A124V 0.23 tolerated(1) benign(0) TCGA-BR-4184-01 11 55872941 55872941 C T OR8H2 Silent p.C141C 0.25 TCGA-BR-4184-01 11 558819 558819 G A C11orf35 Intron 0.45 TCGA-BR-4184-01 11 55889929 55889929 T C OR8H3 Silent p.A27A 0.21 TCGA-BR-4184-01 11 56114241 56114241 G A OR8K1 Missense_Mutation p.A243T 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.814) TCGA-BR-4184-01 11 56143919 56143919 G A OR8U1 Missense_Mutation p.A274T 0.08 tolerated(0.05) benign(0.167) TCGA-BR-4184-01 11 56258342 56258342 C T OR5M8 Missense_Mutation p.G169S 0.28 tolerated(0.06) possibly_damaging(0.856) TCGA-BR-4184-01 11 57076125 57076125 C A TNKS1BP1 Nonsense_Mutation p.E1354* 0.29 TCGA-BR-4184-01 11 57252625 57252625 C T SLC43A1 Missense_Mutation p.A542T 0.15 tolerated(0.3) benign(0.002) TCGA-BR-4184-01 11 5730360 5730360 C T TRIM22 Missense_Mutation p.R327C 0.17 tolerated(0.21) benign(0.001) TCGA-BR-4184-01 11 57428850 57428850 G A CLP1 Missense_Mutation p.R407H 0.09 tolerated(0.06) benign(0.211) TCGA-BR-4184-01 11 57569589 57569589 A - CTNND1 Frame_Shift_Del p.N449Tfs*49 0.19 TCGA-BR-4184-01 11 59480487 59480487 C T OR10V1 Missense_Mutation p.A278T 0.29 deleterious(0) benign(0.016) TCGA-BR-4184-01 11 59611434 59611434 C T GIF Silent p.L58L 0.12 TCGA-BR-4184-01 11 60070111 60070111 C T MS4A4A Missense_Mutation p.A156V 0.22 tolerated(0.35) benign(0.015) TCGA-BR-4184-01 11 60470903 60470903 C T MS4A8 Missense_Mutation p.A91V 0.26 tolerated(0.9) benign(0.01) TCGA-BR-4184-01 11 60666093 60666093 T C PRPF19 Missense_Mutation p.T354A 0.22 deleterious(0.02) possibly_damaging(0.457) TCGA-BR-4184-01 11 60670217 60670217 C T PRPF19 Missense_Mutation p.R128Q 0.33 deleterious(0.03) probably_damaging(0.93) TCGA-BR-4184-01 11 60785861 60785861 T C CD6 Silent p.C646C 0.27 TCGA-BR-4184-01 11 60889151 60889151 C T CD5 Missense_Mutation p.R292C 0.25 deleterious(0.03) probably_damaging(0.994) TCGA-BR-4184-01 11 61165323 61165323 G A TMEM216 Missense_Mutation p.A103T 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-BR-4184-01 11 61290689 61290689 G A SYT7 Missense_Mutation p.T397M 0.30 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 11 61488161 61488161 C T DAGLA Silent p.L36L 0.31 TCGA-BR-4184-01 11 61572224 61572224 G - FADS1 Frame_Shift_Del p.P329Qfs*28 0.30 TCGA-BR-4184-01 11 61615676 61615676 G A FADS2 Missense_Mutation p.A222T 0.20 deleterious(0.01) possibly_damaging(0.818) TCGA-BR-4184-01 11 6220850 6220850 C T OR52W1 Missense_Mutation p.R133C 0.15 tolerated(0.09) benign(0) TCGA-BR-4184-01 11 6221355 6221355 G A OR52W1 Missense_Mutation p.R301H 0.26 deleterious(0.01) benign(0.019) TCGA-BR-4184-01 11 62288822 62288822 G A AHNAK Missense_Mutation p.A4356V 0.08 benign(0.003) TCGA-BR-4184-01 11 62298466 62298466 G A AHNAK Silent p.G1141G 0.24 TCGA-BR-4184-01 11 62338497 62338497 G A EEF1G Silent p.G154G 0.24 TCGA-BR-4184-01 11 62365601 62365601 A - MTA2 Frame_Shift_Del p.Y129Tfs*33 0.27 TCGA-BR-4184-01 11 62400959 62400959 G A GANAB Silent p.G218G 0.23 TCGA-BR-4184-01 11 62601368 62601368 G A WDR74 Missense_Mutation p.R273C 0.28 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 11 6261008 6261008 C T CNGA4 Missense_Mutation p.R87C 0.27 deleterious(0) possibly_damaging(0.606) TCGA-BR-4184-01 11 6262731 6262731 C T CNGA4 Silent p.L330L 0.31 TCGA-BR-4184-01 11 6291549 6291549 C T CCKBR Missense_Mutation p.A212V 0.25 tolerated(0.3) benign(0.017) TCGA-BR-4184-01 11 63057764 63057764 G T SLC22A10 Missense_Mutation p.A43S 0.23 deleterious(0.01) possibly_damaging(0.529) TCGA-BR-4184-01 11 6340319 6340319 C T PRKCDBP 3'UTR 0.22 TCGA-BR-4184-01 11 63525705 63525705 A - RTN3 3'UTR 0.17 TCGA-BR-4184-01 11 63682282 63682282 C T RCOR2 Missense_Mutation p.G109S 0.32 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 11 64023268 64023268 G A PLCB3 Missense_Mutation p.D225N 0.23 deleterious(0.03) possibly_damaging(0.655) TCGA-BR-4184-01 11 6413036 6413036 C T SMPD1 Silent p.G247G 0.18 TCGA-BR-4184-01 11 64434955 64434955 C T NRXN2 Missense_Mutation p.R522H 0.24 deleterious(0) benign(0.118) TCGA-BR-4184-01 11 64522963 64522963 C T PYGM Missense_Mutation p.R243H 0.19 deleterious(0) probably_damaging(0.998) TCGA-BR-4184-01 11 64606954 64606954 C A CDC42BPG Missense_Mutation p.G224V 0.18 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 11 6472626 6472626 G A TRIM3 Nonsense_Mutation p.R526* 0.12 TCGA-BR-4184-01 11 64802341 64802341 C T SNX15 Silent p.I93I 0.19 TCGA-BR-4184-01 11 64876893 64876893 C T VPS51 Missense_Mutation p.R529C 0.49 deleterious(0) probably_damaging(0.939) TCGA-BR-4184-01 11 64977874 64977874 C T CAPN1 Silent p.V670V 0.25 TCGA-BR-4184-01 11 65273657 65273657 A G MALAT1 RNA 0.33 TCGA-BR-4184-01 11 65325188 65325188 C T LTBP3 Silent p.R81R 0.20 TCGA-BR-4184-01 11 65633355 65633355 C T MUS81 Missense_Mutation p.R527C 0.13 deleterious(0.01) possibly_damaging(0.462) TCGA-BR-4184-01 11 65743960 65743960 C T SART1 Missense_Mutation p.T556M 0.18 deleterious(0) probably_damaging(0.957) TCGA-BR-4184-01 11 65793857 65793857 G A CATSPER1 5'UTR 0.23 TCGA-BR-4184-01 11 66033585 66033585 C T KLC2 Missense_Mutation p.R542C 0.21 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-BR-4184-01 11 66061810 66061810 G A TMEM151A Silent p.Q31Q 0.27 TCGA-BR-4184-01 11 66130984 66130984 C T SLC29A2 Missense_Mutation p.A432T 0.22 tolerated(0.19) benign(0.023) TCGA-BR-4184-01 11 66235677 66235677 C T PELI3 Silent p.C26C 0.29 TCGA-BR-4184-01 11 66411175 66411175 A G RBM14-RBM4 Missense_Mutation p.K198E 0.20 tolerated(1) unknown(0) TCGA-BR-4184-01 11 66456223 66456223 C T SPTBN2 Silent p.T2044T 0.11 TCGA-BR-4184-01 11 66461764 66461764 G A SPTBN2 Missense_Mutation p.A1450V 0.28 tolerated(0.15) benign(0.147) TCGA-BR-4184-01 11 66475077 66475077 G A SPTBN2 Silent p.A521A 0.38 TCGA-BR-4184-01 11 66475138 66475138 C T SPTBN2 Missense_Mutation p.R501H 0.21 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 11 6654194 6654194 C T DCHS1 Missense_Mutation p.R850H 0.20 tolerated(0.2) possibly_damaging(0.804) TCGA-BR-4184-01 11 6661150 6661150 G A DCHS1 Silent p.S565S 0.10 TCGA-BR-4184-01 11 66626561 66626561 A G LRFN4 Missense_Mutation p.Y449C 0.23 deleterious(0) possibly_damaging(0.774) TCGA-BR-4184-01 11 67047125 67047125 T C ADRBK1 Missense_Mutation p.V132A 0.09 deleterious(0.02) possibly_damaging(0.597) TCGA-BR-4184-01 11 67052656 67052656 C T ADRBK1 Silent p.C634C 0.08 TCGA-BR-4184-01 11 67077278 67077278 C T SSH3 Silent p.G416G 0.29 TCGA-BR-4184-01 11 67352167 67352167 G A GSTP1 Silent p.Q52Q 0.14 TCGA-BR-4184-01 11 67432886 67432886 G A ALDH3B2 Silent p.G192G 0.08 TCGA-BR-4184-01 11 67816417 67816417 C T TCIRG1 Silent p.G542G 0.26 TCGA-BR-4184-01 11 67957392 67957392 G A SUV420H1 Missense_Mutation p.S51L 0.29 deleterious(0.04) benign(0.102) TCGA-BR-4184-01 11 68029864 68029864 G A C11orf24 Missense_Mutation p.A200V 0.22 tolerated(0.21) benign(0.004) TCGA-BR-4184-01 11 6817027 6817027 G T OR6A2 5'UTR 0.25 TCGA-BR-4184-01 11 68377453 68377453 C T PPP6R3 Silent p.C850C 0.63 TCGA-BR-4184-01 11 6867086 6867086 G T OR10A5 Missense_Mutation p.S58I 0.21 tolerated(0.13) benign(0.439) TCGA-BR-4184-01 11 6913396 6913396 G A OR2D2 Silent p.C112C 0.10 TCGA-BR-4184-01 11 6942872 6942872 G A OR2D3 Missense_Mutation p.A214T 0.21 tolerated(0.14) benign(0.259) TCGA-BR-4184-01 11 69456049 69456049 G A CCND1 5'UTR 0.22 TCGA-BR-4184-01 11 70118424 70118424 G A PPFIA1 Missense_Mutation p.R49H 0.32 deleterious(0) possibly_damaging(0.886) TCGA-BR-4184-01 11 70332069 70332069 G A SHANK2 Silent p.S1444S 0.21 TCGA-BR-4184-01 11 70333124 70333124 G A SHANK2 Missense_Mutation p.R1093W 0.25 deleterious(0.01) possibly_damaging(0.779) TCGA-BR-4184-01 11 70507852 70507852 G A SHANK2 Intron 0.33 TCGA-BR-4184-01 11 71150017 71150017 C T DHCR7 Missense_Mutation p.A247T 0.29 deleterious(0) possibly_damaging(0.869) TCGA-BR-4184-01 11 71725378 71725378 C T NUMA1 Silent p.T1057T 0.32 TCGA-BR-4184-01 11 71725779 71725779 G A NUMA1 Missense_Mutation p.R924C 0.24 possibly_damaging(0.888) TCGA-BR-4184-01 11 71850830 71850830 G A FOLR3 Silent p.A273A 0.24 TCGA-BR-4184-01 11 71939260 71939260 G A INPPL1 Missense_Mutation p.R70H 0.39 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 11 722405 722405 T C EPS8L2 Missense_Mutation p.V355A 0.15 deleterious(0) benign(0.129) TCGA-BR-4184-01 11 72295250 72295250 C T PDE2A Missense_Mutation p.A549T 0.21 tolerated(0.18) benign(0.124) TCGA-BR-4184-01 11 72420943 72420943 C T ARAP1 Missense_Mutation p.D499N 0.28 deleterious(0.02) benign(0.017) TCGA-BR-4184-01 11 72945327 72945327 C T P2RY2 Silent p.G41G 0.30 TCGA-BR-4184-01 11 73070963 73070963 G A ARHGEF17 Missense_Mutation p.S1391N 0.24 deleterious(0.04) benign(0.007) TCGA-BR-4184-01 11 73429910 73429910 G A RAB6A Missense_Mutation p.A70V 0.27 deleterious(0) possibly_damaging(0.824) TCGA-BR-4184-01 11 74563096 74563096 G A XRRA1 Missense_Mutation p.A393V 0.31 deleterious(0.03) probably_damaging(0.999) TCGA-BR-4184-01 11 75851844 75851844 T A UVRAG Missense_Mutation p.I496N 0.26 tolerated(0.36) benign(0.002) TCGA-BR-4184-01 11 75851877 75851877 C T UVRAG Missense_Mutation p.A507V 0.26 tolerated_low_confidence(0.12) benign(0.134) TCGA-BR-4184-01 11 76507476 76507476 T G TSKU Silent p.A272A 0.10 TCGA-BR-4184-01 11 77784094 77784094 C T NDUFC2 Missense_Mutation p.R87H 0.10 tolerated(0.45) benign(0.016) TCGA-BR-4184-01 11 7846790 7846790 G T OR5P3 Missense_Mutation p.H244N 0.19 deleterious(0) probably_damaging(0.995) TCGA-BR-4184-01 11 7847232 7847232 A G OR5P3 Silent p.G96G 0.07 TCGA-BR-4184-01 11 7982197 7982197 G A NLRP10 Missense_Mutation p.A321V 0.33 deleterious(0.01) benign(0.002) TCGA-BR-4184-01 11 8119372 8119372 C T TUB Missense_Mutation p.R388W 0.33 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 11 8248580 8248580 G A LMO1 Missense_Mutation p.R103W 0.47 deleterious(0.03) probably_damaging(1) TCGA-BR-4184-01 11 8248591 8248591 T C LMO1 Missense_Mutation p.E99G 0.50 deleterious(0.03) probably_damaging(0.981) TCGA-BR-4184-01 11 82868586 82868586 G A PCF11 Silent p.P35P 0.09 TCGA-BR-4184-01 11 82936075 82936075 A - ANKRD42 Frame_Shift_Del p.D229Tfs*2 0.20 TCGA-BR-4184-01 11 85436878 85436878 T - SYTL2 Frame_Shift_Del p.T208Qfs*25 0.14 TCGA-BR-4184-01 11 86048431 86048431 C T C11orf73 Silent p.S93S 0.12 TCGA-BR-4184-01 11 86267716 86267716 G A ME3 Missense_Mutation p.R116W 0.29 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 11 865745 865745 G A TSPAN4 Missense_Mutation p.A162T 0.48 tolerated(0.43) benign(0.002) TCGA-BR-4184-01 11 86662812 86662812 A - FZD4 Frame_Shift_Del p.L329Wfs*29 0.22 TCGA-BR-4184-01 11 88059527 88059527 C T CTSC Intron 0.28 TCGA-BR-4184-01 11 88300351 88300351 G A GRM5 Missense_Mutation p.R834C 0.19 deleterious(0) probably_damaging(0.998) TCGA-BR-4184-01 11 89938663 89938663 T C CHORDC1 Missense_Mutation p.T212A 0.22 tolerated(0.12) benign(0.03) TCGA-BR-4184-01 11 92507336 92507336 C T FAT3 Missense_Mutation p.A1442V 0.10 possibly_damaging(0.682) TCGA-BR-4184-01 11 92715429 92715429 G A MTNR1B Missense_Mutation p.S347N 0.27 tolerated(0.14) benign(0.003) TCGA-BR-4184-01 11 93554356 93554356 C T VSTM5 Silent p.T75T 0.26 TCGA-BR-4184-01 11 94189473 94189473 T - MRE11A Frame_Shift_Del p.N511Ifs*13 0.25 TCGA-BR-4184-01 11 94326774 94326774 G A PIWIL4 Missense_Mutation p.A373T 0.21 tolerated(0.13) benign(0.146) TCGA-BR-4184-01 11 9457899 9457899 C T IPO7 Missense_Mutation p.R752C 0.26 deleterious(0.04) benign(0.057) TCGA-BR-4184-01 11 94599243 94599243 G A AMOTL1 Missense_Mutation p.A800T 0.27 tolerated(0.09) probably_damaging(0.999) TCGA-BR-4184-01 11 95555113 95555113 A - CEP57 Frame_Shift_Del p.K262Rfs*31 0.23 TCGA-BR-4184-01 11 9806818 9806818 T C SBF2 Silent p.L1695L 0.07 TCGA-BR-4184-01 11 9838554 9838554 G A SBF2 Missense_Mutation p.R1271C 0.22 deleterious(0.01) probably_damaging(0.972) TCGA-BR-4184-01 12 101018596 101018596 A T GAS2L3 Missense_Mutation p.K671N 0.32 tolerated(0.1) benign(0.025) TCGA-BR-4184-01 12 10147759 10147759 G A CLEC1B Silent p.G175G 0.27 TCGA-BR-4184-01 12 101588918 101588918 G A SLC5A8 Silent p.G164G 0.22 TCGA-BR-4184-01 12 101680157 101680157 T - UTP20 Frame_Shift_Del p.L131* 0.25 TCGA-BR-4184-01 12 101720944 101720944 C T UTP20 Missense_Mutation p.R1043W 0.10 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 12 103699756 103699756 A T C12orf42 Missense_Mutation p.N209K 0.26 deleterious(0.04) possibly_damaging(0.556) TCGA-BR-4184-01 12 10370695 10370695 C T GABARAPL1 Missense_Mutation p.P42S 0.31 tolerated(0.06) benign(0.002) TCGA-BR-4184-01 12 104136204 104136204 C T STAB2 Missense_Mutation p.A1968V 0.24 deleterious(0.03) benign(0.075) TCGA-BR-4184-01 12 104682747 104682747 G T TXNRD1 Missense_Mutation p.A115S 0.28 tolerated(0.19) benign(0.039) TCGA-BR-4184-01 12 105531765 105531765 G C KIAA1033 Missense_Mutation p.L476F 0.29 deleterious(0.03) possibly_damaging(0.551) TCGA-BR-4184-01 12 107371846 107371846 T - MTERFD3 Frame_Shift_Del p.N216Tfs*6 0.22 TCGA-BR-4184-01 12 108169097 108169097 C - ASCL4 Frame_Shift_Del p.L37Sfs*53 0.45 TCGA-BR-4184-01 12 10862618 10862618 C T YBX3 Silent p.L223L 0.17 TCGA-BR-4184-01 12 10862684 10862684 G A YBX3 Silent p.S201S 0.28 TCGA-BR-4184-01 12 108913112 108913112 C T FICD Missense_Mutation p.P413S 0.34 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 12 109017769 109017769 C A SELPLG Missense_Mutation p.E121D 0.25 tolerated(0.09) unknown(0) TCGA-BR-4184-01 12 109577464 109577464 C T ACACB Missense_Mutation p.A85V 0.34 tolerated_low_confidence(0.07) benign(0.004) TCGA-BR-4184-01 12 109639432 109639432 C T ACACB Missense_Mutation p.R947C 0.32 deleterious(0) probably_damaging(0.996) TCGA-BR-4184-01 12 109898545 109898545 C T KCTD10 Missense_Mutation p.A95T 0.26 tolerated(0.71) benign(0.034) TCGA-BR-4184-01 12 110019211 110019211 G A MVK Missense_Mutation p.S128N 0.30 deleterious(0.02) benign(0.298) TCGA-BR-4184-01 12 110240894 110240894 C T TRPV4 Missense_Mutation p.G205D 0.17 deleterious(0) possibly_damaging(0.9) TCGA-BR-4184-01 12 110350854 110350854 G A TCHP Missense_Mutation p.A371T 0.13 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 12 110906005 110906005 G A GPN3 Intron 0.32 TCGA-BR-4184-01 12 111895132 111895132 C T ATXN2 Silent p.A1134A 0.09 TCGA-BR-4184-01 12 112369427 112369427 A - TMEM116 Frame_Shift_Del p.*338E 0.10 TCGA-BR-4184-01 12 112460287 112460288 - G ERP29 Frame_Shift_Ins p.K208Efs*22 0.18 TCGA-BR-4184-01 12 112513574 112513574 A T NAA25 Silent p.I228I 0.26 TCGA-BR-4184-01 12 112589844 112589844 G A TRAFD1 Missense_Mutation p.A507T 0.29 deleterious(0.04) possibly_damaging(0.736) TCGA-BR-4184-01 12 112632704 112632704 C T HECTD4 Missense_Mutation p.A2766T 0.32 benign(0.085) TCGA-BR-4184-01 12 112657288 112657288 G A HECTD4 Nonsense_Mutation p.R2180* 0.36 TCGA-BR-4184-01 12 112721041 112721041 G A HECTD4 Silent p.G323G 0.10 TCGA-BR-4184-01 12 113433214 113433214 T - OAS2 Frame_Shift_Del p.F189Lfs*8 0.13 TCGA-BR-4184-01 12 113515327 113515327 G T DTX1 Missense_Mutation p.A120S 0.31 deleterious(0.04) benign(0.001) TCGA-BR-4184-01 12 113545988 113545988 G A RASAL1 Nonsense_Mutation p.R473* 0.23 TCGA-BR-4184-01 12 113612541 113612541 A T DDX54 Silent p.A324A 0.26 TCGA-BR-4184-01 12 1137114 1137114 C T ERC1 Silent p.S15S 0.35 TCGA-BR-4184-01 12 113733925 113733925 T C TPCN1 3'UTR 0.24 TCGA-BR-4184-01 12 1137664 1137664 G T ERC1 Missense_Mutation p.A199S 0.24 deleterious(0.02) probably_damaging(0.976) TCGA-BR-4184-01 12 113822727 113822727 T C PLBD2 Missense_Mutation p.V397A 0.33 deleterious(0.01) possibly_damaging(0.798) TCGA-BR-4184-01 12 113830802 113830802 C T SDS Missense_Mutation p.A311T 0.33 tolerated(0.48) benign(0.001) TCGA-BR-4184-01 12 117604880 117604880 G A FBXO21 Missense_Mutation p.A339V 0.43 tolerated(0.13) benign(0.048) TCGA-BR-4184-01 12 117672544 117672544 G A NOS1 Missense_Mutation p.R1055C 0.20 deleterious(0.01) probably_damaging(0.923) TCGA-BR-4184-01 12 117705930 117705930 T C NOS1 Missense_Mutation p.N620S 0.23 deleterious(0.02) benign(0.02) TCGA-BR-4184-01 12 118105353 118105353 C T KSR2 Missense_Mutation p.R366H 0.29 deleterious(0.04) possibly_damaging(0.813) TCGA-BR-4184-01 12 118199014 118199014 C T KSR2 Missense_Mutation p.R263H 0.20 deleterious(0.04) benign(0.048) TCGA-BR-4184-01 12 118506296 118506296 G A VSIG10 Missense_Mutation p.R485C 0.20 deleterious_low_confidence(0.04) benign(0.247) TCGA-BR-4184-01 12 118517172 118517172 C T VSIG10 Missense_Mutation p.A302T 0.39 tolerated(0.05) possibly_damaging(0.504) TCGA-BR-4184-01 12 118627718 118627718 C T TAOK3 Missense_Mutation p.G408D 0.30 tolerated(0.37) benign(0.001) TCGA-BR-4184-01 12 118828947 118828947 G A SUDS3 Missense_Mutation p.R126Q 0.23 deleterious(0.01) benign(0.278) TCGA-BR-4184-01 12 119583293 119583293 G A SRRM4 Silent p.S293S 0.24 TCGA-BR-4184-01 12 119588980 119588980 C A SRRM4 Missense_Mutation p.A412D 0.30 tolerated_low_confidence(0.05) possibly_damaging(0.495) TCGA-BR-4184-01 12 120142248 120142248 G A CIT Missense_Mutation p.L1742F 0.35 tolerated(0.21) possibly_damaging(0.632) TCGA-BR-4184-01 12 121175675 121175675 G A ACADS Missense_Mutation p.A170T 0.26 deleterious(0.01) possibly_damaging(0.478) TCGA-BR-4184-01 12 121177116 121177116 C T ACADS Silent p.G368G 0.22 TCGA-BR-4184-01 12 121205248 121205248 G A SPPL3 Missense_Mutation p.R308C 0.25 deleterious(0.01) probably_damaging(0.915) TCGA-BR-4184-01 12 122359496 122359496 A C WDR66 Missense_Mutation p.E95D 0.07 tolerated_low_confidence(0.13) benign(0.007) TCGA-BR-4184-01 12 122372182 122372182 C T WDR66 Silent p.C306C 0.19 TCGA-BR-4184-01 12 122396992 122396992 G A WDR66 Missense_Mutation p.A709T 0.27 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 12 122716928 122716928 G A VPS33A Silent p.G552G 0.07 TCGA-BR-4184-01 12 123273396 123273396 C T CCDC62 Missense_Mutation p.A197V 0.09 tolerated(0.46) benign(0.002) TCGA-BR-4184-01 12 123648504 123648504 A G MPHOSPH9 Silent p.S815S 0.06 TCGA-BR-4184-01 12 123687564 123687564 C T MPHOSPH9 Missense_Mutation p.G311D 0.27 tolerated(0.47) benign(0.002) TCGA-BR-4184-01 12 123957201 123957201 G A RILPL1 Missense_Mutation p.R366C 0.33 deleterious_low_confidence(0) probably_damaging(0.939) TCGA-BR-4184-01 12 124144112 124144112 C A GTF2H3 Missense_Mutation p.S222Y 0.28 deleterious(0) probably_damaging(0.934) TCGA-BR-4184-01 12 124270301 124270301 G A DNAH10 Silent p.T352T 0.20 TCGA-BR-4184-01 12 124337847 124337847 C T DNAH10 Missense_Mutation p.S2011L 0.17 probably_damaging(0.99) TCGA-BR-4184-01 12 124422003 124422003 C T CCDC92 Missense_Mutation p.E200K 0.15 tolerated(0.23) possibly_damaging(0.729) TCGA-BR-4184-01 12 124798908 124798908 G A FAM101A Missense_Mutation p.R82H 0.08 tolerated(0.24) benign(0.006) TCGA-BR-4184-01 12 124857100 124857100 C T NCOR2 Missense_Mutation p.A759T 0.50 unknown(0) TCGA-BR-4184-01 12 125397670 125397671 CT - UBC Frame_Shift_Del p.E216Vfs*28 0.22 TCGA-BR-4184-01 12 125448952 125448952 C T DHX37 Missense_Mutation p.G678D 0.36 deleterious(0) probably_damaging(0.95) TCGA-BR-4184-01 12 125900205 125900205 G A TMEM132B Missense_Mutation p.R358H 0.21 tolerated(0.18) benign(0.001) TCGA-BR-4184-01 12 126138478 126138478 G A TMEM132B Missense_Mutation p.R820H 0.28 deleterious(0.03) possibly_damaging(0.686) TCGA-BR-4184-01 12 12630760 12630760 C T DUSP16 Silent p.T335T 0.33 TCGA-BR-4184-01 12 130647640 130647640 T C FZD10 Silent p.R51R 0.36 TCGA-BR-4184-01 12 130842068 130842068 A G PIWIL1 Silent p.L545L 0.24 TCGA-BR-4184-01 12 130919323 130919323 C T RIMBP2 Missense_Mutation p.A720T 0.29 tolerated(0.14) benign(0.014) TCGA-BR-4184-01 12 132237801 132237801 C T SFSWAP Silent p.S405S 0.30 TCGA-BR-4184-01 12 132399917 132399917 G A ULK1 Silent p.T520T 0.18 TCGA-BR-4184-01 12 13243486 13243486 G T GSG1 Missense_Mutation p.S105R 0.29 tolerated(0.73) benign(0.242) TCGA-BR-4184-01 12 132529374 132529374 C T EP400 Silent p.D2220D 0.24 TCGA-BR-4184-01 12 133303972 133303972 G A ANKLE2 Silent p.G891G 0.45 TCGA-BR-4184-01 12 133385136 133385136 C T GOLGA3 Splice_Site p.X174_splice 0.07 TCGA-BR-4184-01 12 133683228 133683228 A C ZNF140 Missense_Mutation p.E455D 0.19 deleterious(0.03) benign(0.084) TCGA-BR-4184-01 12 13717182 13717182 G A GRIN2B Missense_Mutation p.A997V 0.29 deleterious(0.01) benign(0.004) TCGA-BR-4184-01 12 14576873 14576874 - A ATF7IP Frame_Shift_Ins p.V11Sfs*3 0.26 TCGA-BR-4184-01 12 14976105 14976105 A G C12orf60 Missense_Mutation p.D79G 0.23 tolerated(0.29) benign(0.121) TCGA-BR-4184-01 12 14976483 14976485 AGT GG C12orf60 Frame_Shift_Del p.K205Rfs*18 0.20 TCGA-BR-4184-01 12 15819381 15819381 C T EPS8 Missense_Mutation p.A198T 0.15 tolerated(1) benign(0.007) TCGA-BR-4184-01 12 16704207 16704207 C T LMO3 Silent p.T151T 0.08 TCGA-BR-4184-01 12 18491429 18491429 C T PIK3C2G Nonsense_Mutation p.Q448* 0.30 TCGA-BR-4184-01 12 19427794 19427794 G A PLEKHA5 Missense_Mutation p.R397H 0.08 tolerated(0.46) benign(0) TCGA-BR-4184-01 12 2024074 2024074 G A CACNA2D4 Silent p.G85G 0.12 TCGA-BR-4184-01 12 21531352 21531352 C A IAPP Missense_Mutation p.P88T 0.28 deleterious(0.01) possibly_damaging(0.637) TCGA-BR-4184-01 12 21614991 21614991 C T PYROXD1 Silent p.C310C 0.14 TCGA-BR-4184-01 12 22797200 22797200 G A ETNK1 Intron 0.25 TCGA-BR-4184-01 12 23687401 23687401 C T SOX5 Missense_Mutation p.A682T 0.23 tolerated(1) benign(0.001) TCGA-BR-4184-01 12 23689453 23689453 C T SOX5 Missense_Mutation p.R641H 0.12 deleterious(0) probably_damaging(0.996) TCGA-BR-4184-01 12 25267782 25267782 G A CASC1 Silent p.G473G 0.19 TCGA-BR-4184-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.17 deleterious(0) benign(0.361) TCGA-BR-4184-01 12 266244 266244 G A IQSEC3 Missense_Mutation p.R736H 0.33 deleterious(0) probably_damaging(0.991) TCGA-BR-4184-01 12 2788716 2788716 C T CACNA1C Missense_Mutation p.A1781V 0.25 tolerated(0.33) benign(0.012) TCGA-BR-4184-01 12 2907922 2907922 C T FKBP4 Silent p.G148G 0.21 TCGA-BR-4184-01 12 30818767 30818767 T - IPO8 Frame_Shift_Del p.M412* 0.20 TCGA-BR-4184-01 12 30837276 30837276 A G IPO8 Silent p.D94D 0.21 TCGA-BR-4184-01 12 31116918 31116918 C T TSPAN11 Missense_Mutation p.A81V 0.10 deleterious(0) probably_damaging(0.911) TCGA-BR-4184-01 12 34179326 34179326 T - ALG10 Frame_Shift_Del p.S302Pfs*17 0.21 TCGA-BR-4184-01 12 38714473 38714473 T - ALG10B Frame_Shift_Del p.S296Hfs*23 0.24 TCGA-BR-4184-01 12 39716590 39716590 C T KIF21A Missense_Mutation p.G1184D 0.25 tolerated(0.61) benign(0.339) TCGA-BR-4184-01 12 39726490 39726490 C T KIF21A Missense_Mutation p.R920H 0.17 deleterious(0.03) possibly_damaging(0.673) TCGA-BR-4184-01 12 40345052 40345052 T A SLC2A13 Intron 0.20 TCGA-BR-4184-01 12 41408099 41408099 C T CNTN1 Missense_Mutation p.A728V 0.18 tolerated(0.06) benign(0.003) TCGA-BR-4184-01 12 416652 416652 G A KDM5A Missense_Mutation p.L1300F 0.26 deleterious(0.03) possibly_damaging(0.596) TCGA-BR-4184-01 12 41831596 41831596 G A PDZRN4 Intron 0.19 TCGA-BR-4184-01 12 41966851 41966851 A G PDZRN4 Missense_Mutation p.D757G 0.23 deleterious(0.04) probably_damaging(0.998) TCGA-BR-4184-01 12 42858589 42858589 G A PRICKLE1 Missense_Mutation p.T416M 0.20 deleterious(0.02) benign(0.26) TCGA-BR-4184-01 12 42858777 42858777 C T PRICKLE1 Silent p.S353S 0.36 TCGA-BR-4184-01 12 42860064 42860064 C T PRICKLE1 Missense_Mutation p.R236H 0.26 tolerated(0.18) benign(0.072) TCGA-BR-4184-01 12 43826209 43826209 G A ADAMTS20 Silent p.G998G 0.31 TCGA-BR-4184-01 12 45822925 45822925 C T ANO6 Missense_Mutation p.A876V 0.08 tolerated(0.33) benign(0.004) TCGA-BR-4184-01 12 46602891 46602891 T C SLC38A1 Missense_Mutation p.T112A 0.09 tolerated(1) benign(0.037) TCGA-BR-4184-01 12 47170771 47170771 T - SLC38A4 Frame_Shift_Del p.M364Cfs*25 0.21 TCGA-BR-4184-01 12 48073291 48073291 C T RPAP3 Silent p.P424P 0.23 TCGA-BR-4184-01 12 48188645 48188645 G A HDAC7 Silent p.G452G 0.29 TCGA-BR-4184-01 12 48240547 48240547 G A VDR Missense_Mutation p.A317V 0.35 tolerated(0.09) benign(0.331) TCGA-BR-4184-01 12 4835984 4835984 G A GALNT8 Silent p.T166T 0.17 TCGA-BR-4184-01 12 48361942 48361942 G A TMEM106C Missense_Mutation p.G228D 0.08 deleterious(0.03) probably_damaging(0.981) TCGA-BR-4184-01 12 48362040 48362040 G A TMEM106C 3'UTR 0.34 TCGA-BR-4184-01 12 48369182 48369182 G A COL2A1 Silent p.S1268S 0.33 TCGA-BR-4184-01 12 48477397 48477397 G A SENP1 Nonsense_Mutation p.R177* 0.19 TCGA-BR-4184-01 12 48534513 48534513 G A PFKM Silent p.S471S 0.30 TCGA-BR-4184-01 12 48543596 48543596 G A ASB8 Silent p.S140S 0.19 TCGA-BR-4184-01 12 48547285 48547285 C T ASB8 5'UTR 0.09 TCGA-BR-4184-01 12 49087682 49087682 T - CCNT1 Frame_Shift_Del p.M439Cfs*3 0.19 TCGA-BR-4184-01 12 4920535 4920535 C T KCNA6 Missense_Mutation p.A443V 0.26 tolerated(0.05) probably_damaging(0.998) TCGA-BR-4184-01 12 49397360 49397360 T C PRKAG1 Missense_Mutation p.Y250C 0.14 deleterious(0) probably_damaging(0.989) TCGA-BR-4184-01 12 49666675 49666675 C T TUBA1C Missense_Mutation p.R339C 0.24 deleterious_low_confidence(0.03) possibly_damaging(0.696) TCGA-BR-4184-01 12 49719532 49719532 T C TROAP Silent p.G166G 0.30 TCGA-BR-4184-01 12 49722962 49722962 C T TROAP Missense_Mutation p.R347W 0.06 deleterious(0) probably_damaging(0.974) TCGA-BR-4184-01 12 49952676 49952676 G A MCRS1 Missense_Mutation p.P431S 0.35 deleterious(0.03) possibly_damaging(0.828) TCGA-BR-4184-01 12 49994713 49994713 G A FAM186B Missense_Mutation p.A237V 0.31 deleterious(0) benign(0.228) TCGA-BR-4184-01 12 50043299 50043299 G A FMNL3 Missense_Mutation p.A753V 0.24 deleterious(0) probably_damaging(0.991) TCGA-BR-4184-01 12 50367132 50367132 C T AQP6 Missense_Mutation p.A59V 0.17 deleterious(0) probably_damaging(0.96) TCGA-BR-4184-01 12 50856385 50856385 G A LARP4 Missense_Mutation p.R452Q 0.29 deleterious(0.02) probably_damaging(0.932) TCGA-BR-4184-01 12 5154014 5154014 G A KCNA5 Missense_Mutation p.R234H 0.10 deleterious(0) probably_damaging(0.971) TCGA-BR-4184-01 12 51636174 51636174 G A DAZAP2 Missense_Mutation p.R121H 0.25 tolerated_low_confidence(0.13) benign(0.026) TCGA-BR-4184-01 12 51693445 51693445 G A BIN2 Silent p.H154H 0.28 TCGA-BR-4184-01 12 51757930 51757930 G A GALNT6 Missense_Mutation p.R342C 0.25 deleterious(0) probably_damaging(0.976) TCGA-BR-4184-01 12 51773457 51773459 CCT - GALNT6 In_Frame_Del p.E36del 0.30 TCGA-BR-4184-01 12 52385715 52385715 C T ACVR1B Nonsense_Mutation p.R485* 0.20 TCGA-BR-4184-01 12 52695732 52695732 C T KRT86 Missense_Mutation p.A11V 0.20 tolerated(0.14) benign(0.039) TCGA-BR-4184-01 12 52822241 52822241 G A KRT75 Missense_Mutation p.A394V 0.20 deleterious(0) possibly_damaging(0.893) TCGA-BR-4184-01 12 52863220 52863220 G A KRT6C Silent p.G478G 0.23 TCGA-BR-4184-01 12 52864995 52864995 A T KRT6C Missense_Mutation p.I333N 0.27 deleterious(0) probably_damaging(0.989) TCGA-BR-4184-01 12 52881499 52881499 G A KRT6A 3'UTR 0.10 TCGA-BR-4184-01 12 52940272 52940272 C T KRT71 Missense_Mutation p.A375T 0.17 deleterious(0.01) probably_damaging(1) TCGA-BR-4184-01 12 53292668 53292668 C T KRT8 Missense_Mutation p.A361T 0.23 tolerated(0.15) benign(0.444) TCGA-BR-4184-01 12 53446255 53446255 G A TENC1 Silent p.T77T 0.23 TCGA-BR-4184-01 12 53723085 53723085 C T SP7 Silent p.P47P 0.22 TCGA-BR-4184-01 12 53776267 53776267 T C SP1 Missense_Mutation p.F179S 0.37 tolerated(0.05) possibly_damaging(0.665) TCGA-BR-4184-01 12 54105689 54105689 T C CALCOCO1 3'UTR 0.18 TCGA-BR-4184-01 12 54379097 54379097 G A HOXC10 Silent p.A18A 0.32 TCGA-BR-4184-01 12 54379557 54379557 G A HOXC10 Missense_Mutation p.A172T 0.24 tolerated(0.49) benign(0.25) TCGA-BR-4184-01 12 54396240 54396240 G A HOXC9 Missense_Mutation p.A189T 0.26 deleterious(0) probably_damaging(0.978) TCGA-BR-4184-01 12 54423569 54423569 G A HOXC6 Silent p.A177A 0.25 TCGA-BR-4184-01 12 54428168 54428168 G T HOXC5 Missense_Mutation p.E187D 0.24 deleterious(0) probably_damaging(0.987) TCGA-BR-4184-01 12 54577401 54577402 - C SMUG1 Intron 0.17 TCGA-BR-4184-01 12 55420335 55420335 C T NEUROD4 Missense_Mutation p.P38S 0.09 tolerated(0.91) benign(0.001) TCGA-BR-4184-01 12 55420539 55420539 G A NEUROD4 Missense_Mutation p.A106T 0.10 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 12 55726283 55726283 T C OR6C3 Silent p.L267L 0.21 TCGA-BR-4184-01 12 55794672 55794672 C T OR6C65 Silent p.R120R 0.26 TCGA-BR-4184-01 12 55794777 55794777 T C OR6C65 Silent p.F155F 0.25 TCGA-BR-4184-01 12 56346910 56346910 C T DGKA Missense_Mutation p.R677C 0.22 deleterious(0) possibly_damaging(0.67) TCGA-BR-4184-01 12 56478854 56478854 G A ERBB3 Missense_Mutation p.V104M 0.07 deleterious(0.05) possibly_damaging(0.789) TCGA-BR-4184-01 12 56555059 56555059 G A MYL6 Intron 0.10 TCGA-BR-4184-01 12 56661571 56661571 G A COQ10A Intron 0.34 TCGA-BR-4184-01 12 56716264 56716264 G A PAN2 Silent p.G884G 0.22 TCGA-BR-4184-01 12 56811784 56811784 C T TIMELESS Missense_Mutation p.A1155T 0.23 tolerated_low_confidence(0.59) benign(0.006) TCGA-BR-4184-01 12 56992460 56992460 C T BAZ2A Missense_Mutation p.R1887H 0.16 deleterious(0) probably_damaging(0.92) TCGA-BR-4184-01 12 57397343 57397343 G A ZBTB39 Silent p.C453C 0.27 TCGA-BR-4184-01 12 57548147 57548147 C T LRP1 Missense_Mutation p.A333V 0.11 benign(0.004) TCGA-BR-4184-01 12 57595585 57595585 C T LRP1 Silent p.D3497D 0.21 TCGA-BR-4184-01 12 57605717 57605717 C A LRP1 Silent p.A4422A 0.18 TCGA-BR-4184-01 12 57619402 57619402 G A NXPH4 Missense_Mutation p.A267T 0.37 tolerated(0.19) probably_damaging(0.919) TCGA-BR-4184-01 12 58009072 58009072 C T ARHGEF25 Missense_Mutation p.T377M 0.24 deleterious(0.01) possibly_damaging(0.865) TCGA-BR-4184-01 12 58090083 58090083 G A OS9 Missense_Mutation p.R169H 0.34 deleterious(0) possibly_damaging(0.857) TCGA-BR-4184-01 12 58120958 58120958 C T AGAP2 Silent p.A1045A 0.30 TCGA-BR-4184-01 12 58174037 58174037 G - METTL21B Splice_Site p.X99_splice 0.28 TCGA-BR-4184-01 12 58197057 58197057 G A AVIL Silent p.D645D 0.23 TCGA-BR-4184-01 12 58223300 58223300 C T CTDSP2 Silent p.Q48Q 0.05 TCGA-BR-4184-01 12 60168512 60168512 G A SLC16A7 Missense_Mutation p.A146T 0.10 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 12 6127784 6127784 C T VWF Silent p.A1600A 0.26 TCGA-BR-4184-01 12 62946678 62946678 T - MON2 Frame_Shift_Del p.F980Sfs*11 0.32 TCGA-BR-4184-01 12 63182064 63182064 C T PPM1H Missense_Mutation p.A271T 0.16 deleterious(0) probably_damaging(0.982) TCGA-BR-4184-01 12 63541343 63541343 A - AVPR1A Frame_Shift_Del p.F351Lfs*19 0.20 TCGA-BR-4184-01 12 63543935 63543935 G A AVPR1A Missense_Mutation p.P228S 0.28 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 12 63544099 63544099 G A AVPR1A Missense_Mutation p.A173V 0.35 tolerated(0.22) benign(0.034) TCGA-BR-4184-01 12 64377886 64377886 C T SRGAP1 Missense_Mutation p.A76V 0.24 deleterious(0.05) possibly_damaging(0.793) TCGA-BR-4184-01 12 6439819 6439821 GAG - TNFRSF1A In_Frame_Del p.L228del 0.21 TCGA-BR-4184-01 12 64491024 64491024 A - SRGAP1 Frame_Shift_Del p.N562Ifs*19 0.26 TCGA-BR-4184-01 12 64505708 64505708 G T SRGAP1 Missense_Mutation p.D696Y 0.22 deleterious(0.02) possibly_damaging(0.702) TCGA-BR-4184-01 12 64536495 64536495 G - SRGAP1 3'UTR 0.26 TCGA-BR-4184-01 12 64875701 64875701 T - TBK1 Frame_Shift_Del p.F299Lfs*12 0.20 TCGA-BR-4184-01 12 654106 654106 G A B4GALNT3 Missense_Mutation p.R169H 0.41 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 12 657408 657408 C T B4GALNT3 Silent p.N266N 0.20 TCGA-BR-4184-01 12 66308662 66308662 C T HMGA2 Intron 0.21 TCGA-BR-4184-01 12 66703905 66703905 T C HELB Silent p.D399D 0.26 TCGA-BR-4184-01 12 6711240 6711240 G A CHD4 Silent p.S108S 0.32 TCGA-BR-4184-01 12 675296 675296 C T NINJ2 Missense_Mutation p.A74T 0.32 deleterious(0.01) possibly_damaging(0.602) TCGA-BR-4184-01 12 67699777 67699777 C T CAND1 Missense_Mutation p.R777C 0.17 deleterious(0.04) possibly_damaging(0.613) TCGA-BR-4184-01 12 6839847 6839847 A - COPS7A Frame_Shift_Del p.T219Pfs*21 0.19 TCGA-BR-4184-01 12 68551823 68551823 A G IFNG Missense_Mutation p.L79P 0.23 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 12 69042508 69042508 C T RAP1B Missense_Mutation p.R2C 0.18 deleterious(0.02) benign(0.006) TCGA-BR-4184-01 12 70087555 70087555 G A BEST3 Missense_Mutation p.T127M 0.31 deleterious(0) probably_damaging(0.977) TCGA-BR-4184-01 12 7025874 7025874 C T ENO2 Missense_Mutation p.A74V 0.11 tolerated_low_confidence(0.05) benign(0.152) TCGA-BR-4184-01 12 70735907 70735907 C T CNOT2 Missense_Mutation p.A400V 0.08 deleterious(0.01) benign(0.298) TCGA-BR-4184-01 12 70964877 70964877 C T PTPRB Missense_Mutation p.R1100H 0.29 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 12 71523157 71523157 T - TSPAN8 Frame_Shift_Del p.N205Ifs*2 0.23 TCGA-BR-4184-01 12 71531970 71531970 G A TSPAN8 Missense_Mutation p.A101V 0.06 tolerated(0.55) benign(0.035) TCGA-BR-4184-01 12 7280857 7280857 G A RBP5 Silent p.S77S 0.26 TCGA-BR-4184-01 12 72863686 72863686 T C TRHDE Silent p.C443C 0.23 TCGA-BR-4184-01 12 7288865 7288865 G A CLSTN3 Missense_Mutation p.R269H 0.10 tolerated(1) benign(0.001) TCGA-BR-4184-01 12 7528533 7528533 G A CD163L1 Missense_Mutation p.R817C 0.26 tolerated(0.06) benign(0.044) TCGA-BR-4184-01 12 75676076 75676076 T C CAPS2 Missense_Mutation p.I542V 0.25 tolerated(0.11) benign(0.348) TCGA-BR-4184-01 12 76740999 76740999 G A BBS10 Nonsense_Mutation p.R256* 0.17 TCGA-BR-4184-01 12 77244672 77244672 C T ZDHHC17 Silent p.C602C 0.16 TCGA-BR-4184-01 12 77252617 77252617 C T CSRP2 3'UTR 0.36 TCGA-BR-4184-01 12 78444840 78444840 A G NAV3 Missense_Mutation p.D810G 0.29 tolerated(0.07) benign(0.341) TCGA-BR-4184-01 12 81610701 81610701 C T ACSS3 Missense_Mutation p.A459V 0.23 deleterious(0) probably_damaging(0.976) TCGA-BR-4184-01 12 82870436 82870436 T A METTL25 Missense_Mutation p.I529N 0.35 tolerated(0.51) benign(0.303) TCGA-BR-4184-01 12 8759609 8759609 C T AICDA Splice_Site p.X3_splice 0.21 TCGA-BR-4184-01 12 88443073 88443075 TCT - CEP290 In_Frame_Del p.E2443del 0.27 TCGA-BR-4184-01 12 88524079 88524079 T - CEP290 Frame_Shift_Del p.N212Tfs*14 0.23 TCGA-BR-4184-01 12 88547228 88547228 A G TMTC3 Missense_Mutation p.N117S 0.18 tolerated(0.66) benign(0.002) TCGA-BR-4184-01 12 8866509 8866509 G A RIMKLB Missense_Mutation p.R16H 0.11 tolerated(0.11) benign(0.004) TCGA-BR-4184-01 12 89992941 89992941 G A ATP2B1 Missense_Mutation p.R1102C 0.30 deleterious(0) possibly_damaging(0.711) TCGA-BR-4184-01 12 9000230 9000230 C T A2ML1 Missense_Mutation p.A590V 0.28 deleterious(0) probably_damaging(0.977) TCGA-BR-4184-01 12 90049651 90049651 C T ATP2B1 Missense_Mutation p.A5T 0.21 tolerated_low_confidence(0.42) benign(0.056) TCGA-BR-4184-01 12 91498015 91498015 C T LUM Missense_Mutation p.R315H 0.19 tolerated(0.09) benign(0.001) TCGA-BR-4184-01 12 9229462 9229462 C T A2M Missense_Mutation p.G1141D 0.18 tolerated(0.08) benign(0.013) TCGA-BR-4184-01 12 9262560 9262560 A - A2M Frame_Shift_Del p.L194Sfs*40 0.21 TCGA-BR-4184-01 12 9268379 9268379 C T A2M Missense_Mutation p.A23T 0.31 tolerated(0.19) benign(0.06) TCGA-BR-4184-01 12 92814871 92814871 G A CLLU1OS Missense_Mutation p.A74V 0.20 tolerated_low_confidence(0.91) benign(0) TCGA-BR-4184-01 12 93100872 93100872 C T C12orf74 Silent p.G155G 0.33 TCGA-BR-4184-01 12 93236266 93236266 A C EEA1 Missense_Mutation p.V297G 0.10 deleterious(0) benign(0.375) TCGA-BR-4184-01 12 94972205 94972205 C T TMCC3 Missense_Mutation p.A366T 0.15 deleterious(0.05) probably_damaging(0.999) TCGA-BR-4184-01 12 95927128 95927128 A - USP44 Frame_Shift_Del p.L302* 0.11 TCGA-BR-4184-01 12 96380970 96380970 G A HAL Missense_Mutation p.T309M 0.23 deleterious(0) probably_damaging(0.995) TCGA-BR-4184-01 12 966394 966394 T C WNK1 Missense_Mutation p.I460T 0.28 deleterious(0) unknown(0) TCGA-BR-4184-01 12 96640801 96640801 G A ELK3 Silent p.A97A 0.25 TCGA-BR-4184-01 12 97051724 97051724 G A C12orf55 Missense_Mutation p.G1722D 0.06 deleterious(0) probably_damaging(0.99) TCGA-BR-4184-01 12 97078974 97078974 G - C12orf55 Frame_Shift_Del p.C1993Vfs*11 0.20 TCGA-BR-4184-01 13 100172322 100172322 G A TM9SF2 Missense_Mutation p.R91H 0.19 tolerated(0.22) probably_damaging(0.951) TCGA-BR-4184-01 13 100204534 100204534 C T TM9SF2 Missense_Mutation p.S481F 0.33 deleterious(0) probably_damaging(0.988) TCGA-BR-4184-01 13 100909900 100909900 G A PCCA Missense_Mutation p.R230H 0.22 deleterious(0) possibly_damaging(0.851) TCGA-BR-4184-01 13 101720344 101720344 C T NALCN Missense_Mutation p.E1458K 0.34 tolerated(0.07) possibly_damaging(0.831) TCGA-BR-4184-01 13 101760070 101760070 T - NALCN Frame_Shift_Del p.K812Rfs*6 0.20 TCGA-BR-4184-01 13 102029307 102029307 C T NALCN Missense_Mutation p.R159Q 0.27 deleterious(0.01) benign(0.389) TCGA-BR-4184-01 13 102359114 102359114 A G ITGBL1 Missense_Mutation p.T381A 0.20 tolerated(0.19) benign(0.061) TCGA-BR-4184-01 13 102568812 102568812 G A FGF14 Intron 0.19 TCGA-BR-4184-01 13 103286332 103286332 C T TPP2 Missense_Mutation p.A426V 0.26 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 13 103445716 103445716 G A KDELC1 Missense_Mutation p.A216V 0.20 deleterious(0.04) probably_damaging(0.981) TCGA-BR-4184-01 13 109792683 109792683 C T MYO16 Missense_Mutation p.R1353C 0.17 deleterious(0) probably_damaging(0.988) TCGA-BR-4184-01 13 110827668 110827668 C T COL4A1 Missense_Mutation p.G1032D 0.30 probably_damaging(1) TCGA-BR-4184-01 13 110839556 110839556 C T COL4A1 Missense_Mutation p.G553S 0.30 benign(0.013) TCGA-BR-4184-01 13 110859767 110859767 C T COL4A1 Missense_Mutation p.A255T 0.11 unknown(0) TCGA-BR-4184-01 13 111130478 111130478 C T COL4A2 Missense_Mutation p.P852S 0.24 benign(0.003) TCGA-BR-4184-01 13 111996478 111996478 G A TEX29 3'UTR 0.25 TCGA-BR-4184-01 13 113826043 113826043 C T PROZ Missense_Mutation p.A298V 0.20 tolerated(0.49) benign(0.022) TCGA-BR-4184-01 13 113917998 113917998 A G CUL4A 3'Flank 0.19 TCGA-BR-4184-01 13 113975905 113975905 G A LAMP1 Missense_Mutation p.R326Q 0.22 tolerated(0.08) possibly_damaging(0.703) TCGA-BR-4184-01 13 114526405 114526405 G A GAS6 Silent p.A532A 0.32 TCGA-BR-4184-01 13 114542718 114542718 C - GAS6 Frame_Shift_Del p.G150Afs*49 0.28 TCGA-BR-4184-01 13 20056687 20056687 A T TPTE2 Missense_Mutation p.S40R 0.13 tolerated_low_confidence(0.07) benign(0.002) TCGA-BR-4184-01 13 20279899 20279899 G A PSPC1 Missense_Mutation p.A430V 0.15 tolerated(0.08) benign(0.03) TCGA-BR-4184-01 13 20641083 20641083 C T ZMYM2 Silent p.G1075G 0.08 TCGA-BR-4184-01 13 21555688 21555688 G A LATS2 Missense_Mutation p.A861V 0.15 tolerated(0.05) benign(0.151) TCGA-BR-4184-01 13 22246290 22246290 G A FGF9 Missense_Mutation p.G80D 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-BR-4184-01 13 23906034 23906034 G A SACS Missense_Mutation p.A3994V 0.08 probably_damaging(0.99) TCGA-BR-4184-01 13 23908271 23908271 C T SACS Nonsense_Mutation p.W3248* 0.15 TCGA-BR-4184-01 13 23909914 23909914 G A SACS Missense_Mutation p.P2701S 0.23 probably_damaging(0.999) TCGA-BR-4184-01 13 23942607 23942607 C T SACS Silent p.T93T 0.34 TCGA-BR-4184-01 13 24190110 24190110 C T TNFRSF19 Silent p.C95C 0.25 TCGA-BR-4184-01 13 24860366 24860366 C T SPATA13 Silent p.G772G 0.12 TCGA-BR-4184-01 13 24871865 24871865 A C SPATA13 Missense_Mutation p.K1192T 0.11 deleterious(0.01) benign(0.022) TCGA-BR-4184-01 13 25008533 25008533 C A PARP4 Missense_Mutation p.E1582D 0.09 deleterious(0.03) benign(0.411) TCGA-BR-4184-01 13 25480954 25480954 C T CENPJ Missense_Mutation p.E408K 0.25 deleterious(0) possibly_damaging(0.726) TCGA-BR-4184-01 13 25670410 25670410 C T PABPC3 Missense_Mutation p.A25V 0.23 deleterious(0) benign(0.327) TCGA-BR-4184-01 13 25671495 25671495 G A PABPC3 Missense_Mutation p.A387T 0.18 tolerated(0.09) benign(0.032) TCGA-BR-4184-01 13 25672306 25672306 A - PABPC3 3'UTR 0.19 TCGA-BR-4184-01 13 26144987 26144987 T A ATP8A2 Missense_Mutation p.I519N 0.10 deleterious(0) probably_damaging(0.94) TCGA-BR-4184-01 13 32355867 32355867 C T RXFP2 Missense_Mutation p.S282L 0.25 tolerated(0.1) benign(0.098) TCGA-BR-4184-01 13 32747622 32747622 G A FRY Missense_Mutation p.R757H 0.30 deleterious(0.01) probably_damaging(0.995) TCGA-BR-4184-01 13 32821627 32821627 C T FRY Silent p.F2332F 0.09 TCGA-BR-4184-01 13 32911443 32911443 A - BRCA2 Frame_Shift_Del p.N986Ifs*5 0.12 TCGA-BR-4184-01 13 32912807 32912807 G A BRCA2 Missense_Mutation p.A1439T 0.24 tolerated(0.13) benign(0) TCGA-BR-4184-01 13 32944628 32944628 G A BRCA2 Silent p.S2807S 0.32 TCGA-BR-4184-01 13 32953551 32953551 C T BRCA2 Missense_Mutation p.A2951V 0.31 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 13 33091905 33091905 G A N4BP2L2 Intron 0.13 TCGA-BR-4184-01 13 33338694 33338694 A - PDS5B Frame_Shift_Del p.S1198Vfs*10 0.20 TCGA-BR-4184-01 13 33344393 33344393 C T PDS5B Silent p.G1253G 0.23 TCGA-BR-4184-01 13 33686932 33686932 C T STARD13 Silent p.T806T 0.22 TCGA-BR-4184-01 13 36767810 36767810 C T SOHLH2 Missense_Mutation p.M203I 0.26 tolerated(0.17) benign(0.005) TCGA-BR-4184-01 13 36878523 36878523 C T SPG20 Silent p.E660E 0.25 TCGA-BR-4184-01 13 37014191 37014191 A G CCNA1 Silent p.Q323Q 0.20 TCGA-BR-4184-01 13 39262274 39262274 C T FREM2 Missense_Mutation p.R265C 0.11 deleterious(0.03) possibly_damaging(0.847) TCGA-BR-4184-01 13 41705357 41705357 C T KBTBD6 Missense_Mutation p.A431T 0.24 tolerated(0.12) benign(0.19) TCGA-BR-4184-01 13 41834827 41834827 T C MTRF1 Missense_Mutation p.K73E 0.07 tolerated(0.94) benign(0.002) TCGA-BR-4184-01 13 42465597 42465597 G A VWA8 Missense_Mutation p.R204C 0.30 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 13 42729890 42729891 AG - DGKH Frame_Shift_Del p.L196Ffs*14 0.29 TCGA-BR-4184-01 13 42793448 42793448 C T DGKH Missense_Mutation p.P1099L 0.08 tolerated(0.28) benign(0.41) TCGA-BR-4184-01 13 42875031 42875031 G A AKAP11 Missense_Mutation p.A717T 0.34 deleterious(0.02) possibly_damaging(0.652) TCGA-BR-4184-01 13 42876608 42876608 G A AKAP11 Silent p.S1242S 0.25 TCGA-BR-4184-01 13 45983111 45983111 C T SLC25A30 Missense_Mutation p.A55T 0.22 deleterious(0.04) probably_damaging(0.996) TCGA-BR-4184-01 13 46658431 46658431 T - CPB2 Frame_Shift_Del p.K66Nfs*7 0.20 TCGA-BR-4184-01 13 50065970 50065970 A - SETDB2 Frame_Shift_Del p.I718Yfs*11 0.18 TCGA-BR-4184-01 13 50204926 50204926 G A ARL11 Missense_Mutation p.V115I 0.42 tolerated(0.11) benign(0.196) TCGA-BR-4184-01 13 50279819 50279819 T - KPNA3 Frame_Shift_Del p.N437Tfs*3 0.30 TCGA-BR-4184-01 13 50505205 50505205 C T SPRYD7 Missense_Mutation p.A58T 0.21 tolerated(0.14) benign(0.033) TCGA-BR-4184-01 13 51855296 51855296 C T FAM124A Silent p.C551C 0.10 TCGA-BR-4184-01 13 51953678 51953678 C T INTS6 Missense_Mutation p.A436T 0.22 tolerated(0.16) benign(0.048) TCGA-BR-4184-01 13 52598258 52598258 T - ALG11 Frame_Shift_Del p.L133* 0.29 TCGA-BR-4184-01 13 52598400 52598400 C T ALG11 Silent p.Y178Y 0.27 TCGA-BR-4184-01 13 52603935 52603935 T C UTP14C Missense_Mutation p.L332P 0.19 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 13 52960256 52960256 G A THSD1 Missense_Mutation p.R363C 0.27 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 13 53282677 53282677 A C LECT1 Silent p.P261P 0.37 TCGA-BR-4184-01 13 53418988 53418988 C T PCDH8 Missense_Mutation p.A974T 0.43 tolerated(0.97) benign(0.013) TCGA-BR-4184-01 13 58208511 58208511 C T PCDH17 Missense_Mutation p.R611C 0.22 deleterious(0.02) possibly_damaging(0.893) TCGA-BR-4184-01 13 61986229 61986229 G T PCDH20 Missense_Mutation p.A668D 0.19 tolerated(0.08) benign(0.056) TCGA-BR-4184-01 13 72049901 72049901 G A DACH1 Missense_Mutation p.R653C 0.06 probably_damaging(1) TCGA-BR-4184-01 13 73321194 73321194 G A BORA Missense_Mutation p.C476Y 0.18 tolerated(0.15) probably_damaging(0.958) TCGA-BR-4184-01 13 76379754 76379754 C T LMO7 Missense_Mutation p.R119C 0.20 deleterious(0) probably_damaging(0.997) TCGA-BR-4184-01 13 76391408 76391408 G A LMO7 Nonsense_Mutation p.W453* 0.26 TCGA-BR-4184-01 13 76408509 76408509 G A LMO7 Missense_Mutation p.R838H 0.08 deleterious(0) probably_damaging(0.997) TCGA-BR-4184-01 13 77592810 77592810 C T FBXL3 Silent p.S132S 0.10 TCGA-BR-4184-01 13 77642784 77642784 G A MYCBP2 Silent p.G3991G 0.17 TCGA-BR-4184-01 13 77807298 77807298 C T MYCBP2 Silent p.K872K 0.07 TCGA-BR-4184-01 13 78318625 78318625 G A SLAIN1 Intron 0.30 TCGA-BR-4184-01 13 78492681 78492681 G A EDNRB Missense_Mutation p.R100C 0.32 tolerated_low_confidence(0.1) benign(0.006) TCGA-BR-4184-01 13 79175910 79175910 G A POU4F1 Silent p.G300G 0.38 TCGA-BR-4184-01 13 84453498 84453498 G A SLITRK1 3'UTR 0.16 TCGA-BR-4184-01 13 86369760 86369760 C T SLITRK6 Missense_Mutation p.R295H 0.19 tolerated(0.51) benign(0.001) TCGA-BR-4184-01 13 88329951 88329951 G T SLITRK5 Missense_Mutation p.G770C 0.09 deleterious(0.04) probably_damaging(0.984) TCGA-BR-4184-01 13 92345910 92345910 G A GPC5 Silent p.A265A 0.22 TCGA-BR-4184-01 13 94958286 94958286 G A GPC6 Missense_Mutation p.R354H 0.07 tolerated(0.05) probably_damaging(0.998) TCGA-BR-4184-01 13 96086079 96086079 C T CLDN10 5'UTR 0.21 TCGA-BR-4184-01 13 96239899 96239899 C T DZIP1 Silent p.P704P 0.11 TCGA-BR-4184-01 13 98009823 98009823 G A MBNL2 Missense_Mutation p.V298I 0.31 tolerated(0.25) benign(0.008) TCGA-BR-4184-01 13 98829385 98829385 G A RNF113B Missense_Mutation p.R36C 0.41 deleterious(0) probably_damaging(0.972) TCGA-BR-4184-01 14 100595920 100595920 C T EVL Silent p.G246G 0.11 TCGA-BR-4184-01 14 101488429 101488429 C T MIR379 RNA 0.26 TCGA-BR-4184-01 14 101521030 101521030 G A MIR134 RNA 0.32 TCGA-BR-4184-01 14 102028655 102028655 C T DIO3 Silent p.G274G 0.12 TCGA-BR-4184-01 14 102349641 102349641 A G PPP2R5C Silent p.Q182Q 0.29 TCGA-BR-4184-01 14 102356590 102356590 G A PPP2R5C Missense_Mutation p.E247K 0.38 deleterious(0) probably_damaging(0.944) TCGA-BR-4184-01 14 102453010 102453010 C T DYNC1H1 Silent p.I816I 0.17 TCGA-BR-4184-01 14 102469005 102469005 G T DYNC1H1 Missense_Mutation p.K1558N 0.13 possibly_damaging(0.461) TCGA-BR-4184-01 14 103447231 103447231 G A CDC42BPB Missense_Mutation p.A340V 0.23 deleterious(0) possibly_damaging(0.574) TCGA-BR-4184-01 14 103941507 103941507 C T MARK3 Missense_Mutation p.A481V 0.17 deleterious(0.03) possibly_damaging(0.522) TCGA-BR-4184-01 14 104194182 104194182 G A ZFYVE21 Missense_Mutation p.A97T 0.25 tolerated(0.24) possibly_damaging(0.608) TCGA-BR-4184-01 14 105208225 105208225 C T ADSSL1 Silent p.G321G 0.32 TCGA-BR-4184-01 14 105406357 105406357 C T AHNAK2 Missense_Mutation p.S5144N 0.22 benign(0.041) TCGA-BR-4184-01 14 105413326 105413326 G A AHNAK2 Missense_Mutation p.P2821L 0.25 probably_damaging(1) TCGA-BR-4184-01 14 105415885 105415885 G A AHNAK2 Missense_Mutation p.A1968V 0.24 benign(0.006) TCGA-BR-4184-01 14 105517738 105517738 C T GPR132 Missense_Mutation p.A246T 0.41 tolerated(0.06) benign(0.172) TCGA-BR-4184-01 14 105618517 105618517 G A JAG2 Silent p.G300G 0.15 TCGA-BR-4184-01 14 105707625 105707625 C T BRF1 Missense_Mutation p.R224H 0.54 deleterious(0) probably_damaging(0.995) TCGA-BR-4184-01 14 105716187 105716187 C T BTBD6 Silent p.D212D 0.25 TCGA-BR-4184-01 14 106235811 106235811 G A IGHG3 Silent p.V299V 0.21 TCGA-BR-4184-01 14 106641745 106641745 G A IGHV1-18 Nonsense_Mutation p.R57* 0.40 TCGA-BR-4184-01 14 106725333 106725333 A G IGHV3-23 Silent p.S73S 0.11 TCGA-BR-4184-01 14 106791445 106791445 C T IGHV3-30 Silent p.G4G 0.06 TCGA-BR-4184-01 14 106845337 106845337 A G IGHV3-35 Missense_Mutation p.Y113H 0.27 deleterious_low_confidence(0) possibly_damaging(0.728) TCGA-BR-4184-01 14 106967231 106967231 G A IGHV1-46 Nonsense_Mutation p.R57* 0.20 TCGA-BR-4184-01 14 107083360 107083360 G T IGHV4-59 Missense_Mutation p.L82I 0.13 deleterious_low_confidence(0.02) probably_damaging(0.965) TCGA-BR-4184-01 14 20388764 20388764 C T OR4K5 5'UTR 0.11 TCGA-BR-4184-01 14 20403904 20403904 T - OR4K1 Frame_Shift_Del p.F28Lfs*6 0.14 TCGA-BR-4184-01 14 20404274 20404274 C T OR4K1 Missense_Mutation p.A150V 0.07 tolerated(0.9) benign(0.02) TCGA-BR-4184-01 14 20404350 20404350 T C OR4K1 Silent p.D175D 0.15 TCGA-BR-4184-01 14 20763639 20763639 C T TTC5 Missense_Mutation p.R297H 0.35 tolerated(0.14) benign(0.212) TCGA-BR-4184-01 14 20779703 20779703 C T CCNB1IP1 3'UTR 0.07 TCGA-BR-4184-01 14 20784573 20784573 C T CCNB1IP1 Missense_Mutation p.G37D 0.12 deleterious(0.04) probably_damaging(0.993) TCGA-BR-4184-01 14 20836631 20836631 C T TEP1 Missense_Mutation p.V2617M 0.30 tolerated(0.07) benign(0.001) TCGA-BR-4184-01 14 20853143 20853143 C T TEP1 Splice_Site p.X1036_splice 0.21 TCGA-BR-4184-01 14 21542396 21542396 G A ARHGEF40 Silent p.A169A 0.18 TCGA-BR-4184-01 14 21702318 21702318 C T HNRNPC Missense_Mutation p.R12H 0.30 tolerated(0.22) benign(0.006) TCGA-BR-4184-01 14 21873401 21873401 G A CHD8 Missense_Mutation p.R1092C 0.32 deleterious(0) probably_damaging(0.998) TCGA-BR-4184-01 14 22038134 22038134 C T OR10G3 Missense_Mutation p.V248M 0.28 deleterious(0.04) benign(0.084) TCGA-BR-4184-01 14 22279966 22279966 T - TRAV9-1 Frame_Shift_Del p.W54Gfs*14 0.31 TCGA-BR-4184-01 14 22616465 22616465 C T TRAV27 Missense_Mutation p.T69M 0.23 deleterious(0) benign(0.299) TCGA-BR-4184-01 14 23416833 23416833 G A HAUS4 Silent p.C272C 0.24 TCGA-BR-4184-01 14 23652214 23652214 C T SLC7A8 5'UTR 0.29 TCGA-BR-4184-01 14 23845030 23845030 C T IL25 Missense_Mutation p.R159C 0.21 tolerated(0.05) probably_damaging(0.959) TCGA-BR-4184-01 14 23862233 23862233 G A MYH6 Missense_Mutation p.R1047C 0.11 deleterious(0.03) probably_damaging(0.97) TCGA-BR-4184-01 14 24035477 24035477 G A AP1G2 Intron 0.31 TCGA-BR-4184-01 14 24470629 24470629 C T DHRS4L2 Silent p.L190L 0.30 TCGA-BR-4184-01 14 24572751 24572751 C T PCK2 Missense_Mutation p.R501W 0.31 deleterious(0.01) probably_damaging(1) TCGA-BR-4184-01 14 24618731 24618731 C T RNF31 Missense_Mutation p.R250C 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-BR-4184-01 14 24620776 24620776 G A RNF31 Missense_Mutation p.R607Q 0.27 tolerated(0.29) benign(0.011) TCGA-BR-4184-01 14 24641722 24641722 G A REC8 5'UTR 0.21 TCGA-BR-4184-01 14 24642219 24642219 C T REC8 Silent p.R79R 0.24 TCGA-BR-4184-01 14 24654160 24654160 C T IPO4 Missense_Mutation p.E479K 0.12 tolerated(0.65) benign(0.039) TCGA-BR-4184-01 14 24709343 24709344 CA - TINF2 Frame_Shift_Del p.C383Qfs*14 0.20 TCGA-BR-4184-01 14 24718610 24718610 G - TGM1 Frame_Shift_Del p.P788Qfs*18 0.26 TCGA-BR-4184-01 14 24791279 24791279 C T ADCY4 Missense_Mutation p.R860H 0.36 deleterious(0.03) probably_damaging(0.996) TCGA-BR-4184-01 14 24879247 24879247 G - NYNRIN Frame_Shift_Del p.A751Pfs*15 0.29 TCGA-BR-4184-01 14 24900835 24900835 G A KHNYN Missense_Mutation p.G123D 0.22 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 14 31604296 31604296 A G HECTD1 Silent p.R1120R 0.26 TCGA-BR-4184-01 14 35240741 35240741 G A BAZ1A Missense_Mutation p.R1093W 0.08 deleterious(0) probably_damaging(0.973) TCGA-BR-4184-01 14 35739649 35739649 C T KIAA0391 Silent p.S489S 0.28 TCGA-BR-4184-01 14 36133925 36133925 G A RALGAPA1 Missense_Mutation p.P1245S 0.07 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 14 38678974 38678974 C T SSTR1 Missense_Mutation p.A127V 0.22 tolerated(0.06) benign(0.305) TCGA-BR-4184-01 14 38724733 38724733 G A CLEC14A Silent p.R165R 0.25 TCGA-BR-4184-01 14 39591696 39591696 C T GEMIN2 Silent p.D156D 0.15 TCGA-BR-4184-01 14 45400591 45400591 G A KLHL28 Silent p.Y499Y 0.27 TCGA-BR-4184-01 14 45414534 45414534 A - KLHL28 Frame_Shift_Del p.Y200Mfs*3 0.24 TCGA-BR-4184-01 14 45473399 45473399 C G FAM179B Missense_Mutation p.T825S 0.21 tolerated(0.14) benign(0.008) TCGA-BR-4184-01 14 45579902 45579902 C T PRPF39 Missense_Mutation p.A485V 0.18 deleterious(0.02) benign(0.406) TCGA-BR-4184-01 14 45667954 45667954 G A FANCM Missense_Mutation p.A1942T 0.19 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 14 51210171 51210171 G A NIN Missense_Mutation p.A1755V 0.48 tolerated(0.12) benign(0.201) TCGA-BR-4184-01 14 51259463 51259463 C T NIN Silent p.R134R 0.13 TCGA-BR-4184-01 14 51448575 51448575 G A TRIM9 Missense_Mutation p.A617V 0.08 deleterious(0) probably_damaging(0.983) TCGA-BR-4184-01 14 51560869 51560869 G A TRIM9 Silent p.V263V 0.19 TCGA-BR-4184-01 14 51561103 51561103 G A TRIM9 Silent p.C185C 0.27 TCGA-BR-4184-01 14 52169261 52169261 T A FRMD6 Missense_Mutation p.I109N 0.17 deleterious(0.03) probably_damaging(0.946) TCGA-BR-4184-01 14 52477679 52477679 C T NID2 Missense_Mutation p.A1213T 0.23 tolerated(0.09) possibly_damaging(0.602) TCGA-BR-4184-01 14 52981604 52981604 C T TXNDC16 Missense_Mutation p.S200N 0.23 tolerated(0.37) benign(0.006) TCGA-BR-4184-01 14 53525293 53525293 G A DDHD1 Missense_Mutation p.R632C 0.28 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 14 55433239 55433239 T - WDHD1 Frame_Shift_Del p.N755Ifs*11 0.18 TCGA-BR-4184-01 14 55836529 55836529 G A ATG14 Silent p.T429T 0.42 TCGA-BR-4184-01 14 55836547 55836547 G A ATG14 Silent p.R423R 0.32 TCGA-BR-4184-01 14 55903506 55903506 G A TBPL2 Silent p.S127S 0.32 TCGA-BR-4184-01 14 57085368 57085368 T C TMEM260 Silent p.G371G 0.21 TCGA-BR-4184-01 14 58934588 58934588 C T KIAA0586 Missense_Mutation p.A850V 0.14 deleterious(0.04) probably_damaging(0.999) TCGA-BR-4184-01 14 60574805 60574805 C T PCNXL4 Intron 0.26 TCGA-BR-4184-01 14 60749747 60749747 A G PPM1A Missense_Mutation p.D182G 0.26 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 14 60756574 60756574 C T PPM1A Missense_Mutation p.R408C 0.19 tolerated(0.05) possibly_damaging(0.605) TCGA-BR-4184-01 14 61997194 61997194 C T RP11-47I22.4 Missense_Mutation p.L53F 0.09 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 14 63856359 63856359 C T PPP2R5E Missense_Mutation p.A349T 0.12 deleterious(0.01) benign(0.167) TCGA-BR-4184-01 14 64518405 64518405 G A SYNE2 Missense_Mutation p.D2592N 0.21 probably_damaging(0.999) TCGA-BR-4184-01 14 64519034 64519034 C T SYNE2 Silent p.G2801G 0.25 TCGA-BR-4184-01 14 64519480 64519480 A - SYNE2 Frame_Shift_Del p.T2952Hfs*22 0.20 TCGA-BR-4184-01 14 64519888 64519888 T - SYNE2 Frame_Shift_Del p.L3087* 0.22 TCGA-BR-4184-01 14 64542723 64542723 C T SYNE2 Nonsense_Mutation p.R3643* 0.35 TCGA-BR-4184-01 14 64634076 64634081 GGCCAC - SYNE2 In_Frame_Del p.T5581_A5582del 0.20 TCGA-BR-4184-01 14 64676162 64676162 C T SYNE2 Missense_Mutation p.R6136C 0.24 probably_damaging(0.928) TCGA-BR-4184-01 14 64678805 64678805 C T SYNE2 Missense_Mutation p.R6284C 0.26 probably_damaging(1) TCGA-BR-4184-01 14 65008477 65008477 C T HSPA2 Missense_Mutation p.R304C 0.46 deleterious_low_confidence(0) probably_damaging(0.963) TCGA-BR-4184-01 14 67389441 67389441 C T GPHN Missense_Mutation p.A172V 0.17 tolerated(0.29) probably_damaging(0.998) TCGA-BR-4184-01 14 69521638 69521638 G A DCAF5 Missense_Mutation p.R589C 0.31 deleterious_low_confidence(0) possibly_damaging(0.869) TCGA-BR-4184-01 14 69726992 69726992 C T GALNT16 5'UTR 0.60 TCGA-BR-4184-01 14 69791495 69791495 G A GALNT16 Missense_Mutation p.R141H 0.32 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 14 70171413 70171413 C A KIAA0247 Missense_Mutation p.L138M 0.28 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 14 70496965 70496965 G A SMOC1 Missense_Mutation p.R433H 0.10 deleterious_low_confidence(0.04) benign(0.157) TCGA-BR-4184-01 14 70634125 70634125 C T SLC8A3 Missense_Mutation p.A339T 0.20 deleterious(0.01) probably_damaging(0.992) TCGA-BR-4184-01 14 70925992 70925992 T C ADAM21 Silent p.G592G 0.27 TCGA-BR-4184-01 14 71199485 71199485 G A MAP3K9 Silent p.V881V 0.44 TCGA-BR-4184-01 14 72137841 72137841 C A SIPA1L1 Missense_Mutation p.A754D 0.07 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 14 72190523 72190523 G T SIPA1L1 Missense_Mutation p.Q1477H 0.13 tolerated(0.06) probably_damaging(0.976) TCGA-BR-4184-01 14 72191399 72191399 C T SIPA1L1 Silent p.S1508S 0.31 TCGA-BR-4184-01 14 73140989 73140989 C T DPF3 Missense_Mutation p.R277Q 0.17 tolerated(0.73) benign(0.001) TCGA-BR-4184-01 14 73159844 73159844 C T DPF3 Missense_Mutation p.D228N 0.31 tolerated(0.19) benign(0.059) TCGA-BR-4184-01 14 73989372 73989372 C T HEATR4 Missense_Mutation p.R162H 0.30 tolerated(0.58) benign(0.001) TCGA-BR-4184-01 14 74186094 74186094 T C ELMSAN1 Silent p.L1016L 0.25 TCGA-BR-4184-01 14 74407705 74407705 C T FAM161B Missense_Mutation p.G505S 0.28 tolerated(0.07) possibly_damaging(0.468) TCGA-BR-4184-01 14 74763144 74763144 C T ABCD4 Missense_Mutation p.R145H 0.23 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 14 74824066 74824066 C T VRTN Missense_Mutation p.R194C 0.17 tolerated(0.17) probably_damaging(0.945) TCGA-BR-4184-01 14 74973512 74973512 C T LTBP2 Missense_Mutation p.A1308T 0.27 tolerated(0.26) benign(0.05) TCGA-BR-4184-01 14 75265781 75265781 C T YLPM1 Nonsense_Mutation p.R1261* 0.26 TCGA-BR-4184-01 14 75514833 75514833 A - MLH3 Frame_Shift_Del p.L509* 0.11 TCGA-BR-4184-01 14 76135826 76135826 G A TTLL5 Missense_Mutation p.A48T 0.26 deleterious(0.04) benign(0.265) TCGA-BR-4184-01 14 76542994 76542994 G A IFT43 Silent p.T90T 0.26 TCGA-BR-4184-01 14 77580796 77580796 C T CIPC 3'UTR 0.59 TCGA-BR-4184-01 14 77745184 77745184 G A POMT2 Silent p.G640G 0.16 TCGA-BR-4184-01 14 77910662 77910662 C T VIPAS39 Missense_Mutation p.R176H 0.11 deleterious(0.03) benign(0.159) TCGA-BR-4184-01 14 78146264 78146264 G A ALKBH1 Missense_Mutation p.R169C 0.09 deleterious(0) benign(0.365) TCGA-BR-4184-01 14 78397931 78397931 G A ADCK1 Missense_Mutation p.R426H 0.29 deleterious(0) probably_damaging(0.997) TCGA-BR-4184-01 14 81329141 81329141 C T CEP128 Missense_Mutation p.R241H 0.21 tolerated(0.07) benign(0.201) TCGA-BR-4184-01 14 81952724 81952724 G A SEL1L Silent p.G569G 0.06 TCGA-BR-4184-01 14 86089506 86089506 G A FLRT2 Missense_Mutation p.A550T 0.38 deleterious(0) probably_damaging(0.984) TCGA-BR-4184-01 14 88401080 88401080 C T GALC Missense_Mutation p.R685H 0.14 tolerated_low_confidence(0.51) benign(0) TCGA-BR-4184-01 14 88434718 88434718 C T GALC Missense_Mutation p.R290H 0.18 deleterious(0.02) probably_damaging(1) TCGA-BR-4184-01 14 88940113 88940113 T - PTPN21 Frame_Shift_Del p.I849Lfs*9 0.28 TCGA-BR-4184-01 14 89154769 89154769 T - EML5 Frame_Shift_Del p.N863Mfs*4 0.24 TCGA-BR-4184-01 14 89647121 89647121 G A FOXN3 Missense_Mutation p.R281W 0.33 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 14 90755095 90755095 C T NRDE2 Missense_Mutation p.R875Q 0.18 deleterious(0) probably_damaging(0.996) TCGA-BR-4184-01 14 90769464 90769464 C A NRDE2 Missense_Mutation p.E337D 0.20 deleterious(0.01) possibly_damaging(0.641) TCGA-BR-4184-01 14 90784357 90784357 C T NRDE2 Silent p.P55P 0.10 TCGA-BR-4184-01 14 91701428 91701428 C A GPR68 5'UTR 0.24 TCGA-BR-4184-01 14 92076988 92076988 C T CATSPERB Missense_Mutation p.A812T 0.22 deleterious(0) possibly_damaging(0.895) TCGA-BR-4184-01 14 93125612 93125612 G C RIN3 Missense_Mutation p.Q711H 0.08 deleterious(0.02) probably_damaging(0.971) TCGA-BR-4184-01 14 93125643 93125643 A G RIN3 Missense_Mutation p.T722A 0.20 deleterious(0.01) probably_damaging(0.93) TCGA-BR-4184-01 14 93730184 93730184 A - BTBD7 Frame_Shift_Del p.Y440Mfs*28 0.23 TCGA-BR-4184-01 14 94088106 94088106 G A UNC79 Silent p.S1332S 0.11 TCGA-BR-4184-01 14 94120164 94120164 G A UNC79 Missense_Mutation p.G1916S 0.25 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 14 94405768 94405768 C T ASB2 Missense_Mutation p.A435T 0.50 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 14 94528700 94528700 G A DDX24 Missense_Mutation p.A329V 0.30 tolerated(0.38) benign(0.01) TCGA-BR-4184-01 14 94964324 94964324 C T SERPINA12 Silent p.T137T 0.18 TCGA-BR-4184-01 14 95922035 95922035 G A SYNE3 Silent p.G272G 0.08 TCGA-BR-4184-01 14 96707401 96707401 C T BDKRB2 Nonsense_Mutation p.Q246* 0.13 TCGA-BR-4184-01 14 96756089 96756089 C T ATG2B Silent p.E1970E 0.14 TCGA-BR-4184-01 14 99932082 99932082 A G SETD3 Missense_Mutation p.S21P 0.11 tolerated(0.13) possibly_damaging(0.665) TCGA-BR-4184-01 15 101567506 101567506 C T LRRK1 Nonsense_Mutation p.R816* 0.40 TCGA-BR-4184-01 15 102182545 102182545 T C TM2D3 3'UTR 0.24 TCGA-BR-4184-01 15 22383015 22383015 C A OR4N4 Silent p.V181V 0.14 TCGA-BR-4184-01 15 22945147 22945147 G A CYFIP1 Silent p.A406A 0.35 TCGA-BR-4184-01 15 22997826 22997826 C T CYFIP1 Silent p.H1024H 0.07 TCGA-BR-4184-01 15 23687625 23687625 C T GOLGA6L2 Missense_Mutation p.A208T 0.13 benign(0.105) TCGA-BR-4184-01 15 23812066 23812066 G T MKRN3 Missense_Mutation p.E379D 0.09 deleterious(0) probably_damaging(0.991) TCGA-BR-4184-01 15 23931741 23931741 G A NDN Silent p.S208S 0.19 TCGA-BR-4184-01 15 23932398 23932398 G A NDN 5'UTR 0.29 TCGA-BR-4184-01 15 24922492 24922492 T A NPAP1 Missense_Mutation p.L493H 0.28 tolerated(0.1) benign(0.417) TCGA-BR-4184-01 15 25315649 25315649 G A SNORD116-8 RNA 0.31 TCGA-BR-4184-01 15 25318322 25318322 C T SNORD116-9 RNA 0.06 TCGA-BR-4184-01 15 25427436 25427436 G A SNORD115-6 3'Flank 0.26 TCGA-BR-4184-01 15 28366571 28366571 G A HERC2 Missense_Mutation p.A4398V 0.36 benign(0.362) TCGA-BR-4184-01 15 28389918 28389918 G A HERC2 Missense_Mutation p.R3681C 0.13 probably_damaging(0.962) TCGA-BR-4184-01 15 28501354 28501354 G A HERC2 Missense_Mutation p.A876V 0.24 benign(0.044) TCGA-BR-4184-01 15 29397673 29397673 G A APBA2 Missense_Mutation p.S539N 0.14 deleterious(0.01) possibly_damaging(0.809) TCGA-BR-4184-01 15 31253201 31253201 C T MTMR10 Missense_Mutation p.S214N 0.25 tolerated(0.18) benign(0.001) TCGA-BR-4184-01 15 31362319 31362319 G T TRPM1 Missense_Mutation p.S82Y 0.06 deleterious(0) possibly_damaging(0.602) TCGA-BR-4184-01 15 33256409 33256409 G A FMN1 Missense_Mutation p.R790W 0.34 deleterious(0.02) probably_damaging(0.962) TCGA-BR-4184-01 15 34072492 34072492 G A RYR3 Missense_Mutation p.R3073H 0.17 benign(0) TCGA-BR-4184-01 15 34130165 34130165 C T RYR3 Missense_Mutation p.A3995V 0.08 benign(0.021) TCGA-BR-4184-01 15 34134153 34134153 C T RYR3 Missense_Mutation p.R4376W 0.21 probably_damaging(0.981) TCGA-BR-4184-01 15 34355101 34355102 - A CHRM5 Frame_Shift_Ins p.T63Dfs*3 0.14 TCGA-BR-4184-01 15 34393956 34393956 C T EMC7 Missense_Mutation p.A29T 0.29 tolerated(0.38) benign(0.015) TCGA-BR-4184-01 15 35274899 35274899 G A ZNF770 Missense_Mutation p.A246V 0.28 tolerated(0.12) benign(0.025) TCGA-BR-4184-01 15 37184485 37184485 G A MEIS2 Silent p.H441H 0.05 TCGA-BR-4184-01 15 38800067 38800067 C A RASGRP1 Missense_Mutation p.A368S 0.38 deleterious(0.01) probably_damaging(0.91) TCGA-BR-4184-01 15 38990598 38990598 G A C15orf53 Missense_Mutation p.R131H 0.23 tolerated_low_confidence(0.26) benign(0) TCGA-BR-4184-01 15 39885659 39885659 C T THBS1 Silent p.D1019D 0.10 TCGA-BR-4184-01 15 40094085 40094085 C T GPR176 Missense_Mutation p.A266T 0.28 tolerated(0.11) benign(0.407) TCGA-BR-4184-01 15 40585208 40585208 C T PLCB2 Missense_Mutation p.A749T 0.27 deleterious(0.02) probably_damaging(1) TCGA-BR-4184-01 15 40591154 40591154 G A PLCB2 Missense_Mutation p.A232V 0.09 deleterious(0.05) probably_damaging(0.973) TCGA-BR-4184-01 15 40917784 40917785 - A CASC5 Frame_Shift_Ins p.I1803Nfs*5 0.21 TCGA-BR-4184-01 15 40937938 40937938 G A CASC5 Missense_Mutation p.A2018T 0.18 tolerated(0.2) benign(0.093) TCGA-BR-4184-01 15 41276493 41276493 T C INO80 Missense_Mutation p.I1327V 0.22 tolerated(0.15) possibly_damaging(0.5) TCGA-BR-4184-01 15 41829150 41829150 C G RPAP1 Missense_Mutation p.M58I 0.07 tolerated(0.26) benign(0.003) TCGA-BR-4184-01 15 41961288 41961288 C T MGA Missense_Mutation p.L66F 0.26 deleterious(0.04) probably_damaging(0.997) TCGA-BR-4184-01 15 42132384 42132384 C T PLA2G4B Missense_Mutation p.T244M 0.19 deleterious(0) possibly_damaging(0.902) TCGA-BR-4184-01 15 42436328 42436328 C T PLA2G4F Missense_Mutation p.A664T 0.19 tolerated(0.33) benign(0.057) TCGA-BR-4184-01 15 43552444 43552444 C T TGM5 Missense_Mutation p.R81H 0.19 tolerated(0.1) benign(0) TCGA-BR-4184-01 15 43819858 43819858 C - MAP1A Frame_Shift_Del p.R2065Vfs*5 0.24 TCGA-BR-4184-01 15 43924939 43924939 C T CATSPER2 Missense_Mutation p.E458K 0.28 tolerated(0.58) benign(0.005) TCGA-BR-4184-01 15 44120406 44120406 T A WDR76 Missense_Mutation p.S102T 0.33 tolerated(0.33) benign(0.445) TCGA-BR-4184-01 15 44905698 44905698 T - SPG11 Frame_Shift_Del p.E1026Sfs*12 0.24 TCGA-BR-4184-01 15 45391910 45391910 G A DUOX2 Missense_Mutation p.A1122V 0.28 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 15 45777398 45777398 T C SLC30A4 Missense_Mutation p.D418G 0.29 tolerated(0.33) benign(0) TCGA-BR-4184-01 15 48518712 48518712 C A SLC12A1 Intron 0.26 TCGA-BR-4184-01 15 48791196 48791196 G A FBN1 Missense_Mutation p.T718M 0.06 possibly_damaging(0.632) TCGA-BR-4184-01 15 48936939 48936939 C T FBN1 Missense_Mutation p.A10T 0.25 benign(0.086) TCGA-BR-4184-01 15 49304895 49304895 C T SECISBP2L Missense_Mutation p.G561R 0.26 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 15 49903459 49903459 G A FAM227B Nonsense_Mutation p.Q20* 0.26 TCGA-BR-4184-01 15 49924402 49924402 G A DTWD1 Missense_Mutation p.G104D 0.15 deleterious(0) probably_damaging(0.969) TCGA-BR-4184-01 15 50494717 50494717 G A SLC27A2 Missense_Mutation p.R241H 0.30 deleterious(0.02) possibly_damaging(0.818) TCGA-BR-4184-01 15 52356133 52356133 C T MAPK6 Missense_Mutation p.P368S 0.08 tolerated(0.87) benign(0.002) TCGA-BR-4184-01 15 52402115 52402115 T C BCL2L10 Missense_Mutation p.Q182R 0.07 tolerated(0.27) benign(0.003) TCGA-BR-4184-01 15 52497304 52497304 G A MYO5C Silent p.S1526S 0.25 TCGA-BR-4184-01 15 52571811 52571811 C T MYO5C Missense_Mutation p.V67M 0.38 deleterious(0.03) probably_damaging(0.999) TCGA-BR-4184-01 15 55724799 55724799 G A DYX1C1 Missense_Mutation p.A350V 0.25 deleterious(0.01) benign(0.362) TCGA-BR-4184-01 15 55965785 55965785 G A PRTG Missense_Mutation p.R546W 0.26 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 15 57913876 57913876 G A MYZAP Missense_Mutation p.R130Q 0.25 tolerated(1) benign(0.001) TCGA-BR-4184-01 15 57929897 57929897 G A GCOM1 Missense_Mutation p.R313H 0.12 deleterious(0.04) probably_damaging(1) TCGA-BR-4184-01 15 59323599 59323599 C T RNF111 Missense_Mutation p.S193L 0.28 deleterious_low_confidence(0.01) benign(0.299) TCGA-BR-4184-01 15 59499582 59499582 G A LDHAL6B Missense_Mutation p.R148H 0.24 tolerated(0.08) benign(0.1) TCGA-BR-4184-01 15 63009877 63009877 C T TLN2 Nonsense_Mutation p.Q956* 0.38 TCGA-BR-4184-01 15 63019352 63019352 C T TLN2 Silent p.L1108L 0.24 TCGA-BR-4184-01 15 63092928 63092928 C T TLN2 Missense_Mutation p.A2146V 0.29 deleterious(0) possibly_damaging(0.868) TCGA-BR-4184-01 15 63943555 63943555 C T HERC1 Silent p.L3481L 0.28 TCGA-BR-4184-01 15 65114700 65114700 C T PIF1 Missense_Mutation p.S223N 0.17 tolerated(0.71) probably_damaging(0.998) TCGA-BR-4184-01 15 65790263 65790263 G A DPP8 Silent p.N234N 0.25 TCGA-BR-4184-01 15 65892135 65892135 T C VWA9 Missense_Mutation p.M98V 0.33 tolerated(1) benign(0.012) TCGA-BR-4184-01 15 66844070 66844070 C T LCTL Missense_Mutation p.R485H 0.23 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 15 68438921 68438921 A - PIAS1 Frame_Shift_Del p.N239Mfs*47 0.27 TCGA-BR-4184-01 15 68504101 68504102 AC - CLN6 Frame_Shift_Del p.V133Qfs*17 0.12 TCGA-BR-4184-01 15 69331226 69331226 T - NOX5 Frame_Shift_Del p.H470Tfs*10 0.10 TCGA-BR-4184-01 15 69728955 69728955 C T KIF23 Silent p.C483C 0.22 TCGA-BR-4184-01 15 70346947 70346947 C T TLE3 Silent p.T555T 0.19 TCGA-BR-4184-01 15 71433871 71433871 T C THSD4 Missense_Mutation p.V2A 0.22 tolerated_low_confidence(0.16) benign(0) TCGA-BR-4184-01 15 71549040 71549040 A G THSD4 Missense_Mutation p.E334G 0.24 deleterious(0) probably_damaging(0.917) TCGA-BR-4184-01 15 72494822 72494822 G A PKM Intron 0.20 TCGA-BR-4184-01 15 72502791 72502791 C T PKM Missense_Mutation p.R92H 0.18 deleterious(0.04) benign(0.139) TCGA-BR-4184-01 15 72691176 72691176 C T TMEM202 Silent p.G88G 0.24 TCGA-BR-4184-01 15 73542042 73542042 C T NEO1 Missense_Mutation p.A625V 0.26 tolerated(1) benign(0) TCGA-BR-4184-01 15 74327751 74327751 C T PML Intron 0.18 TCGA-BR-4184-01 15 74919715 74919715 C T CLK3 Silent p.T428T 0.17 TCGA-BR-4184-01 15 75311250 75311250 G A SCAMP5 Missense_Mutation p.A212T 0.35 tolerated(0.12) benign(0.008) TCGA-BR-4184-01 15 75499456 75499456 G A C15orf39 Missense_Mutation p.G356D 0.10 deleterious(0) probably_damaging(0.969) TCGA-BR-4184-01 15 75684749 75684749 A - SIN3A Frame_Shift_Del p.F895Lfs*10 0.31 TCGA-BR-4184-01 15 75692389 75692389 G A SIN3A Missense_Mutation p.R616C 0.29 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 15 75949483 75949483 G A SNX33 Missense_Mutation p.R551H 0.29 deleterious(0.01) possibly_damaging(0.708) TCGA-BR-4184-01 15 75968093 75968093 T C CSPG4 Missense_Mutation p.D2256G 0.15 deleterious(0.04) benign(0.066) TCGA-BR-4184-01 15 75968836 75968836 G A CSPG4 Silent p.G2008G 0.08 TCGA-BR-4184-01 15 76205620 76205620 G A FBXO22 Missense_Mutation p.G119D 0.22 tolerated(0.22) possibly_damaging(0.836) TCGA-BR-4184-01 15 76696913 76696913 G A SCAPER Missense_Mutation p.A1140V 0.30 tolerated(0.42) benign(0.182) TCGA-BR-4184-01 15 78211297 78211297 C T RP11-114H24.7 Intron 0.33 TCGA-BR-4184-01 15 78466056 78466056 G A ACSBG1 Silent p.A656A 0.19 TCGA-BR-4184-01 15 78485913 78485913 C T ACSBG1 Missense_Mutation p.A200T 0.25 tolerated(0.07) possibly_damaging(0.869) TCGA-BR-4184-01 15 78566648 78566648 C T DNAJA4 Silent p.T205T 0.17 TCGA-BR-4184-01 15 78635882 78635882 G A CRABP1 Silent p.T97T 0.10 TCGA-BR-4184-01 15 79229690 79229690 C T CTSH Missense_Mutation p.A67T 0.17 tolerated(0.29) benign(0.015) TCGA-BR-4184-01 15 79382811 79382811 G A RASGRF1 Silent p.G10G 0.18 TCGA-BR-4184-01 15 79749839 79749839 A G KIAA1024 Silent p.E450E 0.10 TCGA-BR-4184-01 15 80423565 80423565 C T ZFAND6 Silent p.S136S 0.27 TCGA-BR-4184-01 15 80464493 80464493 T - FAH Frame_Shift_Del p.F205Lfs*2 0.22 TCGA-BR-4184-01 15 81172107 81172107 C T KIAA1199 Missense_Mutation p.H98Y 0.29 tolerated(0.69) benign(0.012) TCGA-BR-4184-01 15 81173308 81173308 G A KIAA1199 Missense_Mutation p.A150T 0.29 tolerated(1) benign(0) TCGA-BR-4184-01 15 81598350 81598350 G A IL16 Silent p.T1174T 0.23 TCGA-BR-4184-01 15 83674328 83674328 G A C15orf40 Intron 0.25 TCGA-BR-4184-01 15 83686744 83686745 - T BTBD1 3'UTR 0.25 TCGA-BR-4184-01 15 83698894 83698894 C G BTBD1 Missense_Mutation p.R350P 0.34 deleterious(0.02) possibly_damaging(0.871) TCGA-BR-4184-01 15 85400381 85400381 G A ALPK3 Silent p.P1006P 0.32 TCGA-BR-4184-01 15 85478614 85478614 C T SLC28A1 Silent p.C482C 0.22 TCGA-BR-4184-01 15 87099509 87099509 G A AGBL1 Missense_Mutation p.G971D 0.15 tolerated_low_confidence(0.68) benign(0.001) TCGA-BR-4184-01 15 89002999 89002999 C T MRPL46 Missense_Mutation p.A229T 0.15 tolerated(0.15) benign(0.064) TCGA-BR-4184-01 15 89172498 89172498 G A AEN Silent p.A194A 0.20 TCGA-BR-4184-01 15 89382100 89382100 C T ACAN Missense_Mutation p.R93C 0.28 deleterious(0) unknown(0) TCGA-BR-4184-01 15 90039664 90039664 C T RHCG Missense_Mutation p.A38T 0.15 tolerated(0.1) benign(0.02) TCGA-BR-4184-01 15 91436365 91436365 G A FES Missense_Mutation p.R621H 0.19 deleterious(0) possibly_damaging(0.838) TCGA-BR-4184-01 15 91453478 91453478 G T MAN2A2 Silent p.R511R 0.32 TCGA-BR-4184-01 15 91461902 91461902 G A MAN2A2 Missense_Mutation p.A1073T 0.16 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 15 91483621 91483621 G A UNC45A Missense_Mutation p.R202H 0.26 deleterious(0.03) benign(0.294) TCGA-BR-4184-01 15 91517404 91517404 G A PRC1 Nonsense_Mutation p.R475* 0.26 TCGA-BR-4184-01 15 91549003 91549003 G A VPS33B Silent p.G317G 0.09 TCGA-BR-4184-01 15 92669301 92669301 G A SLCO3A1 Silent p.A395A 0.27 TCGA-BR-4184-01 15 93015523 93015523 C T C15orf32 Missense_Mutation p.P49S 0.24 tolerated_low_confidence(0.07) probably_damaging(0.932) TCGA-BR-4184-01 15 93527700 93527700 G A CHD2 Missense_Mutation p.M1069I 0.27 deleterious(0.01) benign(0.012) TCGA-BR-4184-01 15 93540578 93540578 G A CHD2 Missense_Mutation p.G1277D 0.32 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 15 96875556 96875556 G A NR2F2 Silent p.Q74Q 0.29 TCGA-BR-4184-01 15 99486223 99486223 C T IGF1R Missense_Mutation p.R1177C 0.07 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 15 99500550 99500550 G A IGF1R Missense_Mutation p.G1328D 0.46 deleterious(0.03) benign(0.305) TCGA-BR-4184-01 15 99653893 99653893 G A SYNM Missense_Mutation p.G302D 0.29 deleterious(0.01) probably_damaging(0.959) TCGA-BR-4184-01 15 99671250 99671250 G A SYNM Silent p.A894A 0.24 TCGA-BR-4184-01 16 11001033 11001033 G A CIITA Missense_Mutation p.A562T 0.23 tolerated(0.31) benign(0.004) TCGA-BR-4184-01 16 11815525 11815525 G T TXNDC11 Missense_Mutation p.P234H 0.24 deleterious(0) probably_damaging(0.997) TCGA-BR-4184-01 16 11931668 11931668 T - RSL1D1 Frame_Shift_Del p.K483Nfs*36 0.23 TCGA-BR-4184-01 16 12220513 12220513 G T SNX29 Missense_Mutation p.A476S 0.09 tolerated(0.08) benign(0.082) TCGA-BR-4184-01 16 12618607 12618607 C T SNX29 Missense_Mutation p.R743C 0.20 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 16 1394700 1394700 G A BAIAP3 Splice_Site p.X621_splice 0.22 TCGA-BR-4184-01 16 14576504 14576504 C T PARN Missense_Mutation p.R554H 0.28 tolerated_low_confidence(0.56) benign(0) TCGA-BR-4184-01 16 1510842 1510842 G A CLCN7 Silent p.G153G 0.11 TCGA-BR-4184-01 16 15714321 15714321 T C KIAA0430 Missense_Mutation p.I903V 0.27 deleterious(0.05) benign(0.011) TCGA-BR-4184-01 16 15727651 15727651 G - KIAA0430 Frame_Shift_Del p.I353Lfs*55 0.13 TCGA-BR-4184-01 16 15835710 15835712 CTC - MYH11 In_Frame_Del p.E860del 0.15 TCGA-BR-4184-01 16 19070909 19070909 A G TMC7 Intron 0.25 TCGA-BR-4184-01 16 19483429 19483429 G A TMC5 Missense_Mutation p.R601H 0.32 tolerated(0.18) possibly_damaging(0.677) TCGA-BR-4184-01 16 19725908 19725908 T - KNOP1 Frame_Shift_Del p.K150Nfs*63 0.12 TCGA-BR-4184-01 16 19884011 19884011 C T GPRC5B Missense_Mutation p.A53T 0.23 tolerated(0.13) benign(0.01) TCGA-BR-4184-01 16 20362068 20362068 C T UMOD 5'UTR 0.22 TCGA-BR-4184-01 16 20396001 20396001 A - PDILT Frame_Shift_Del p.F125Lfs*20 0.22 TCGA-BR-4184-01 16 2048277 2048277 C T ZNF598 Missense_Mutation p.D891N 0.48 benign(0.019) TCGA-BR-4184-01 16 21033308 21033308 A G DNAH3 Missense_Mutation p.Y1921H 0.25 deleterious(0.03) probably_damaging(0.947) TCGA-BR-4184-01 16 21038392 21038392 C T DNAH3 Missense_Mutation p.E1833K 0.09 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 16 21080787 21080787 C - DNAH3 Frame_Shift_Del p.R1111Gfs*18 0.17 TCGA-BR-4184-01 16 2126084 2126084 C A TSC2 Silent p.I885I 0.40 TCGA-BR-4184-01 16 2152614 2152614 C T PKD1 Missense_Mutation p.S2990N 0.41 benign(0.013) TCGA-BR-4184-01 16 2162937 2162937 C T PKD1 Missense_Mutation p.V1005I 0.37 benign(0.11) TCGA-BR-4184-01 16 22260086 22260086 G A EEF2K Missense_Mutation p.V120I 0.12 tolerated(0.61) benign(0.011) TCGA-BR-4184-01 16 2258304 2258304 G A MLST8 Missense_Mutation p.A223T 0.20 tolerated(0.13) benign(0.271) TCGA-BR-4184-01 16 2284179 2284179 G A E4F1 Silent p.R461R 0.50 TCGA-BR-4184-01 16 23079707 23079707 C T USP31 Missense_Mutation p.R1240H 0.23 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-BR-4184-01 16 23197805 23197805 C T SCNN1G Silent p.C71C 0.10 TCGA-BR-4184-01 16 23364329 23364329 C T SCNN1B Silent p.G173G 0.22 TCGA-BR-4184-01 16 23421653 23421653 G A COG7 Missense_Mutation p.R480W 0.10 deleterious(0.03) probably_damaging(0.96) TCGA-BR-4184-01 16 23535663 23535663 C T EARS2 3'UTR 0.09 TCGA-BR-4184-01 16 23652875 23652875 C T DCTN5 Silent p.G4G 0.25 TCGA-BR-4184-01 16 23847557 23847557 G A PRKCB Missense_Mutation p.A21T 0.45 tolerated(0.12) possibly_damaging(0.469) TCGA-BR-4184-01 16 24567768 24567768 C T RBBP6 Missense_Mutation p.A225V 0.09 deleterious_low_confidence(0.01) benign(0.418) TCGA-BR-4184-01 16 24583525 24583525 G A RBBP6 Missense_Mutation p.S1713N 0.33 deleterious_low_confidence(0.01) unknown(0) TCGA-BR-4184-01 16 24818069 24818069 C T TNRC6A Missense_Mutation p.P1502S 0.28 tolerated(0.13) possibly_damaging(0.767) TCGA-BR-4184-01 16 24835163 24835163 G A TNRC6A 3'UTR 0.28 TCGA-BR-4184-01 16 24942549 24942549 C T ARHGAP17 Missense_Mutation p.A691T 0.12 tolerated_low_confidence(0.33) benign(0) TCGA-BR-4184-01 16 27370284 27370284 G A IL4R Missense_Mutation p.R273H 0.24 tolerated(0.32) benign(0) TCGA-BR-4184-01 16 27481652 27481652 G A GTF3C1 Missense_Mutation p.R1531W 0.11 deleterious(0.03) benign(0.007) TCGA-BR-4184-01 16 27509009 27509009 T - GTF3C1 Frame_Shift_Del p.S767Vfs*7 0.31 TCGA-BR-4184-01 16 27709701 27709701 C T KIAA0556 Silent p.C331C 0.22 TCGA-BR-4184-01 16 2816576 2816576 G A SRRM2 Missense_Mutation p.R2016H 0.34 unknown(0) TCGA-BR-4184-01 16 29889661 29889661 G A SEZ6L2 Silent p.C553C 0.25 TCGA-BR-4184-01 16 30569345 30569345 G A ZNF764 Silent p.D53D 0.46 TCGA-BR-4184-01 16 30780692 30780692 C T RNF40 Silent p.G811G 0.11 TCGA-BR-4184-01 16 30794300 30794300 C T ZNF629 Missense_Mutation p.R450H 0.08 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 16 30794364 30794364 G A ZNF629 Missense_Mutation p.P429S 0.16 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 16 31501559 31501559 A G SLC5A2 Intron 0.39 TCGA-BR-4184-01 16 33020872 33020872 G A IGHV3OR16-8 Missense_Mutation p.A94T 0.26 tolerated_low_confidence(0.05) benign(0.411) TCGA-BR-4184-01 16 3367335 3367335 G A ZNF75A Missense_Mutation p.M119I 0.27 tolerated(0.33) benign(0.001) TCGA-BR-4184-01 16 339492 339492 C T AXIN1 Missense_Mutation p.A804T 0.31 tolerated(0.54) benign(0.009) TCGA-BR-4184-01 16 3406131 3406131 G T OR2C1 Missense_Mutation p.S64I 0.09 deleterious(0) probably_damaging(0.997) TCGA-BR-4184-01 16 3781373 3781373 G A CREBBP Silent p.R1664R 0.33 TCGA-BR-4184-01 16 3817721 3817721 T - CREBBP Frame_Shift_Del p.I1084Sfs*15 0.38 TCGA-BR-4184-01 16 4491417 4491417 C T DNAJA3 Silent p.Y157Y 0.33 TCGA-BR-4184-01 16 46712899 46712899 G A VPS35 Missense_Mutation p.R226C 0.26 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 16 47117246 47117246 T C NETO2 Silent p.G488G 0.26 TCGA-BR-4184-01 16 47294547 47294547 G A ITFG1 Missense_Mutation p.A377V 0.19 tolerated(0.69) possibly_damaging(0.548) TCGA-BR-4184-01 16 48134814 48134814 C T ABCC12 Missense_Mutation p.A1003T 0.32 deleterious(0.02) benign(0.323) TCGA-BR-4184-01 16 48250120 48250120 C T ABCC11 Missense_Mutation p.A286T 0.10 tolerated(0.11) benign(0.108) TCGA-BR-4184-01 16 4873830 4873830 C T GLYR1 Missense_Mutation p.A206T 0.19 tolerated(0.76) benign(0.004) TCGA-BR-4184-01 16 49315138 49315138 C T CBLN1 Missense_Mutation p.R80H 0.13 tolerated(0.05) probably_damaging(0.969) TCGA-BR-4184-01 16 4933784 4933784 C T PPL Silent p.R1624R 0.23 TCGA-BR-4184-01 16 50342601 50342601 G A ADCY7 Silent p.T653T 0.21 TCGA-BR-4184-01 16 50659407 50659407 C T NKD1 Silent p.C126C 0.33 TCGA-BR-4184-01 16 50763760 50763760 G T NOD2 Missense_Mutation p.A1000S 0.15 deleterious(0.03) possibly_damaging(0.673) TCGA-BR-4184-01 16 511442 511442 C T RAB11FIP3 Silent p.L251L 0.08 TCGA-BR-4184-01 16 53331022 53331022 G A CHD9 Missense_Mutation p.A1889T 0.10 possibly_damaging(0.859) TCGA-BR-4184-01 16 53358035 53358035 C T CHD9 Missense_Mutation p.A2625V 0.20 unknown(0) TCGA-BR-4184-01 16 53487517 53487517 A - RBL2 Frame_Shift_Del p.K309Sfs*14 0.18 TCGA-BR-4184-01 16 53675004 53675004 G A RPGRIP1L Missense_Mutation p.R967C 0.18 deleterious(0.01) probably_damaging(0.932) TCGA-BR-4184-01 16 55613142 55613142 A G LPCAT2 Missense_Mutation p.D479G 0.28 tolerated(0.6) benign(0) TCGA-BR-4184-01 16 55727960 55727960 G - SLC6A2 Frame_Shift_Del p.A321Lfs*6 0.09 TCGA-BR-4184-01 16 55730216 55730216 C T SLC6A2 Silent p.F409F 0.09 TCGA-BR-4184-01 16 55855375 55855375 G A CES1 Missense_Mutation p.R200C 0.24 deleterious(0) possibly_damaging(0.776) TCGA-BR-4184-01 16 55862794 55862794 C T CES1 Missense_Mutation p.A49T 0.15 tolerated(0.36) benign(0.286) TCGA-BR-4184-01 16 55907786 55907786 C T CES5A Silent p.S108S 0.24 TCGA-BR-4184-01 16 56669778 56669778 C T MT1M 3'Flank 0.35 TCGA-BR-4184-01 16 56672593 56672593 T C MT1A 5'UTR 0.18 TCGA-BR-4184-01 16 56693075 56693075 G A MT1F Silent p.%3D 0.23 TCGA-BR-4184-01 16 56899142 56899142 G A SLC12A3 5'UTR 0.47 TCGA-BR-4184-01 16 57060066 57060066 C T NLRC5 Missense_Mutation p.A404V 0.38 tolerated(0.14) benign(0.014) TCGA-BR-4184-01 16 57503154 57503154 G A POLR2C Silent p.T112T 0.29 TCGA-BR-4184-01 16 57735853 57735853 G A CCDC135 Silent p.S170S 0.10 TCGA-BR-4184-01 16 57805529 57805529 G A KIFC3 Missense_Mutation p.R151W 0.31 deleterious(0.01) possibly_damaging(0.453) TCGA-BR-4184-01 16 58031051 58031051 G A ZNF319 Silent p.C373C 0.31 TCGA-BR-4184-01 16 58031575 58031575 C T ZNF319 Missense_Mutation p.D199N 0.26 deleterious(0) benign(0.41) TCGA-BR-4184-01 16 58570932 58570932 G A CNOT1 Silent p.G1869G 0.15 TCGA-BR-4184-01 16 58622736 58622736 G A CNOT1 Silent p.G59G 0.37 TCGA-BR-4184-01 16 58712668 58712668 G A SLC38A7 Missense_Mutation p.A134V 0.33 deleterious(0.02) benign(0.172) TCGA-BR-4184-01 16 65319329 65319329 C T LINC00922 RNA 0.21 TCGA-BR-4184-01 16 66420974 66420974 C T CDH5 Missense_Mutation p.A158V 0.14 tolerated(0.13) possibly_damaging(0.576) TCGA-BR-4184-01 16 66613521 66613521 A C CMTM2 Missense_Mutation p.K4T 0.28 deleterious_low_confidence(0.01) unknown(0) TCGA-BR-4184-01 16 67116168 67116168 G A CBFB Missense_Mutation p.R151H 0.33 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 16 67168349 67168349 C T C16orf70 Nonsense_Mutation p.R214* 0.23 TCGA-BR-4184-01 16 67234673 67234673 C T ELMO3 Silent p.S262S 0.25 TCGA-BR-4184-01 16 67236873 67236873 G A ELMO3 Silent p.T600T 0.19 TCGA-BR-4184-01 16 67424250 67424250 C T TPPP3 Missense_Mutation p.G120S 0.29 tolerated(0.09) benign(0.031) TCGA-BR-4184-01 16 67470767 67470767 G A HSD11B2 Missense_Mutation p.R360H 0.33 deleterious(0.05) possibly_damaging(0.454) TCGA-BR-4184-01 16 67763353 67763353 C T RANBP10 Silent p.A394A 0.17 TCGA-BR-4184-01 16 67964654 67964654 G T CTRL Missense_Mutation p.P98H 0.27 tolerated(0.09) probably_damaging(0.964) TCGA-BR-4184-01 16 68055612 68055612 G A DDX28 Silent p.T498T 0.08 TCGA-BR-4184-01 16 68160498 68160498 A G NFATC3 Silent p.G462G 0.18 TCGA-BR-4184-01 16 68336334 68336334 C T SLC7A6OS Missense_Mutation p.R250H 0.10 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 16 68725731 68725731 C T CDH3 Missense_Mutation p.A635V 0.17 tolerated(0.72) probably_damaging(0.997) TCGA-BR-4184-01 16 69377294 69377294 C T TMED6 3'UTR 0.31 TCGA-BR-4184-01 16 69390889 69390889 G A TERF2 Missense_Mutation p.A472V 0.22 tolerated(0.42) probably_damaging(0.992) TCGA-BR-4184-01 16 69874131 69874131 T G WWP2 Missense_Mutation p.L148R 0.32 tolerated(0.37) possibly_damaging(0.786) TCGA-BR-4184-01 16 69942692 69942692 C T WWP2 Missense_Mutation p.R315C 0.30 deleterious(0) probably_damaging(0.93) TCGA-BR-4184-01 16 70867804 70867804 G A HYDIN Silent p.G4555G 0.22 TCGA-BR-4184-01 16 70989429 70989429 G A HYDIN Silent p.S2055S 0.32 TCGA-BR-4184-01 16 71570901 71570901 C T CHST4 Silent p.S107S 0.28 TCGA-BR-4184-01 16 716352 716352 T C WDR90 Splice_Site p.X1580_splice 0.26 TCGA-BR-4184-01 16 72130190 72130190 G A DHX38 Missense_Mutation p.R45H 0.26 deleterious(0) possibly_damaging(0.84) TCGA-BR-4184-01 16 72130838 72130838 G A DHX38 Silent p.S147S 0.35 TCGA-BR-4184-01 16 72138392 72138392 C T DHX38 Missense_Mutation p.A673V 0.23 deleterious(0.01) possibly_damaging(0.72) TCGA-BR-4184-01 16 72162994 72162994 G A PMFBP1 Missense_Mutation p.R641W 0.25 deleterious(0) probably_damaging(0.927) TCGA-BR-4184-01 16 72821829 72821829 G A ZFHX3 Missense_Mutation p.A3449V 0.30 unknown(0) TCGA-BR-4184-01 16 72822480 72822480 C T ZFHX3 Missense_Mutation p.R3232H 0.26 unknown(0) TCGA-BR-4184-01 16 72991508 72991508 C T ZFHX3 Missense_Mutation p.R846H 0.25 probably_damaging(0.991) TCGA-BR-4184-01 16 74455114 74455114 C T CLEC18B Missense_Mutation p.A19T 0.11 tolerated(0.05) benign(0.008) TCGA-BR-4184-01 16 74706343 74706343 C T MLKL 3'UTR 0.05 TCGA-BR-4184-01 16 75149234 75149234 G A LDHD Silent p.C63C 0.09 TCGA-BR-4184-01 16 75654554 75654554 G A ADAT1 Silent p.C48C 0.09 TCGA-BR-4184-01 16 76569665 76569665 G A CNTNAP4 Silent p.G920G 0.26 TCGA-BR-4184-01 16 780500 780500 C T NARFL Missense_Mutation p.D450N 0.22 tolerated(0.36) benign(0.012) TCGA-BR-4184-01 16 78198099 78198099 T - WWOX Frame_Shift_Del p.F144Lfs*8 0.21 TCGA-BR-4184-01 16 81095510 81095510 G A C16orf46 Silent p.S148S 0.25 TCGA-BR-4184-01 16 81279097 81279097 C T BCMO1 Silent p.L28L 0.25 TCGA-BR-4184-01 16 82131906 82131906 C T HSD17B2 Silent p.G343G 0.11 TCGA-BR-4184-01 16 84096907 84096907 T A MBTPS1 Intron 0.34 TCGA-BR-4184-01 16 84211351 84211351 C T DNAAF1 Silent p.A694A 0.19 TCGA-BR-4184-01 16 84494133 84494133 C T ATP2C2 Intron 0.26 TCGA-BR-4184-01 16 85954892 85954892 C T IRF8 3'UTR 0.09 TCGA-BR-4184-01 16 86544554 86544554 G A FOXF1 Missense_Mutation p.A127T 0.30 deleterious(0.05) possibly_damaging(0.733) TCGA-BR-4184-01 16 86575334 86575334 C T MTHFSD Missense_Mutation p.R217H 0.27 tolerated(0.07) benign(0.066) TCGA-BR-4184-01 16 86612374 86612374 G A FOXL1 Silent p.S15S 0.31 TCGA-BR-4184-01 16 87445771 87445771 C T ZCCHC14 Silent p.T715T 0.29 TCGA-BR-4184-01 16 88744868 88744868 G A SNAI3 Silent p.C289C 0.38 TCGA-BR-4184-01 16 88872194 88872194 G A CDT1 Missense_Mutation p.R250H 0.21 deleterious(0.02) possibly_damaging(0.527) TCGA-BR-4184-01 16 88876190 88876190 G A APRT Silent p.C153C 0.26 TCGA-BR-4184-01 16 89348895 89348895 T C ANKRD11 Missense_Mutation p.H1352R 0.11 probably_damaging(0.996) TCGA-BR-4184-01 16 89857839 89857839 G A FANCA Missense_Mutation p.A444V 0.50 tolerated(1) possibly_damaging(0.499) TCGA-BR-4184-01 16 8994445 8994445 C T USP7 Missense_Mutation p.V751M 0.30 tolerated(0.12) benign(0.012) TCGA-BR-4184-01 16 89986038 89986038 C A MC1R Silent p.T124T 0.14 TCGA-BR-4184-01 16 90001913 90001913 G A TUBB3 Missense_Mutation p.A352T 0.24 deleterious_low_confidence(0.03) benign(0.364) TCGA-BR-4184-01 16 90099232 90099232 G A GAS8 Missense_Mutation p.R132H 0.16 tolerated(0.58) benign(0.003) TCGA-BR-4184-01 17 10231321 10231321 C A MYH13 Missense_Mutation p.K851N 0.10 deleterious(0.01) benign(0.134) TCGA-BR-4184-01 17 1028590 1028590 C T ABR Silent p.P58P 0.31 TCGA-BR-4184-01 17 1028600 1028600 G A ABR Missense_Mutation p.T55I 0.11 deleterious_low_confidence(0) possibly_damaging(0.478) TCGA-BR-4184-01 17 10353795 10353795 G A MYH4 Missense_Mutation p.R1386C 0.23 deleterious(0.01) probably_damaging(0.988) TCGA-BR-4184-01 17 10438444 10438444 C T MYH2 Missense_Mutation p.R709H 0.22 deleterious(0) possibly_damaging(0.862) TCGA-BR-4184-01 17 10442798 10442798 C T MYH2 Missense_Mutation p.G410D 0.17 deleterious(0.01) possibly_damaging(0.556) TCGA-BR-4184-01 17 10532947 10532947 G T MYH3 Silent p.L1921L 0.10 TCGA-BR-4184-01 17 10554850 10554850 C T MYH3 Missense_Mutation p.A162T 0.09 deleterious(0.02) benign(0.214) TCGA-BR-4184-01 17 12044741 12044741 G A MAP2K4 3'UTR 0.35 TCGA-BR-4184-01 17 12656117 12656117 C T MYOCD Silent p.G504G 0.14 TCGA-BR-4184-01 17 12666430 12666430 A G MYOCD Silent p.Q810Q 0.28 TCGA-BR-4184-01 17 15532000 15532000 C T TRIM16 Missense_Mutation p.A542T 0.14 tolerated(0.35) benign(0.001) TCGA-BR-4184-01 17 15881300 15881300 G A ZSWIM7 3'UTR 0.23 TCGA-BR-4184-01 17 15961846 15961846 C T NCOR1 Silent p.A1983A 0.27 TCGA-BR-4184-01 17 15968937 15968937 C T NCOR1 Missense_Mutation p.A1605T 0.13 probably_damaging(0.995) TCGA-BR-4184-01 17 15974755 15974755 T C NCOR1 Missense_Mutation p.T1374A 0.20 benign(0.001) TCGA-BR-4184-01 17 1634494 1634494 C T WDR81 Missense_Mutation p.R1367W 0.15 deleterious(0) probably_damaging(0.963) TCGA-BR-4184-01 17 1636038 1636038 G A WDR81 Missense_Mutation p.V1468M 0.53 tolerated(0.11) possibly_damaging(0.561) TCGA-BR-4184-01 17 17062260 17062260 G A MPRIP Missense_Mutation p.E664K 0.21 deleterious(0.03) benign(0.197) TCGA-BR-4184-01 17 17766053 17766053 C T TOM1L2 Silent p.Q398Q 0.27 TCGA-BR-4184-01 17 17957486 17957486 A - GID4 Frame_Shift_Del p.K183Nfs*5 0.22 TCGA-BR-4184-01 17 18023355 18023355 T C MYO15A Missense_Mutation p.V414A 0.19 benign(0.153) TCGA-BR-4184-01 17 18039937 18039937 C T MYO15A Silent p.N1572N 0.23 TCGA-BR-4184-01 17 18111722 18111722 G A ALKBH5 3'UTR 0.44 TCGA-BR-4184-01 17 18205934 18205934 G A TOP3A Silent p.S201S 0.24 TCGA-BR-4184-01 17 18668087 18668087 G A FBXW10 Missense_Mutation p.R489Q 0.21 deleterious(0.01) probably_damaging(0.995) TCGA-BR-4184-01 17 18770597 18770597 G A PRPSAP2 Missense_Mutation p.R41Q 0.13 deleterious(0.04) probably_damaging(0.934) TCGA-BR-4184-01 17 18781095 18781095 A G PRPSAP2 Missense_Mutation p.I108M 0.23 tolerated(0.17) benign(0.133) TCGA-BR-4184-01 17 19283208 19283208 G A MAPK7 Missense_Mutation p.A116T 0.10 deleterious(0.05) possibly_damaging(0.798) TCGA-BR-4184-01 17 19284190 19284190 C T MAPK7 Missense_Mutation p.A223V 0.43 tolerated(0.3) possibly_damaging(0.69) TCGA-BR-4184-01 17 19286236 19286236 C T MAPK7 Silent p.G758G 0.21 TCGA-BR-4184-01 17 19584902 19584902 C T SLC47A2 Missense_Mutation p.G452S 0.36 deleterious(0) probably_damaging(0.966) TCGA-BR-4184-01 17 20224852 20224852 G A AC004702.2 Intron 0.17 TCGA-BR-4184-01 17 20884809 20884809 G A RP11-381P6.1 RNA 0.30 TCGA-BR-4184-01 17 21319358 21319358 C T KCNJ12 Missense_Mutation p.P235L 0.13 tolerated(0.1) probably_damaging(0.927) TCGA-BR-4184-01 17 2202208 2202208 C T SMG6 Silent p.A613A 0.07 TCGA-BR-4184-01 17 25910117 25910117 C T KSR1 Silent p.D185D 0.38 TCGA-BR-4184-01 17 25934953 25934953 C T KSR1 Missense_Mutation p.R555W 0.31 deleterious(0) probably_damaging(0.983) TCGA-BR-4184-01 17 25950388 25950388 C T KSR1 3'UTR 0.35 TCGA-BR-4184-01 17 25976038 25976038 G - LGALS9 3'UTR 0.13 TCGA-BR-4184-01 17 2605316 2605316 G A CLUH Missense_Mutation p.R133C 0.14 deleterious(0) probably_damaging(0.998) TCGA-BR-4184-01 17 263122 263122 C T C17orf97 Missense_Mutation p.A163V 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.776) TCGA-BR-4184-01 17 263194 263194 G A C17orf97 Missense_Mutation p.R187H 0.29 tolerated(0.08) probably_damaging(0.984) TCGA-BR-4184-01 17 26449740 26449740 T - NLK Frame_Shift_Del p.F192Lfs*30 0.25 TCGA-BR-4184-01 17 26900862 26900862 G A ALDOC Missense_Mutation p.A297V 0.25 tolerated(0.08) benign(0.059) TCGA-BR-4184-01 17 26944355 26944355 C T KIAA0100 Intron 0.10 TCGA-BR-4184-01 17 27187476 27187476 G A ERAL1 Missense_Mutation p.V407M 0.36 tolerated(0.33) benign(0.004) TCGA-BR-4184-01 17 28296061 28296061 A - EFCAB5 Frame_Shift_Del p.K150Nfs*17 0.39 TCGA-BR-4184-01 17 28754503 28754503 G A CPD Silent p.T648T 0.24 TCGA-BR-4184-01 17 2898752 2898752 G A RAP1GAP2 Missense_Mutation p.A346T 0.34 tolerated(0.76) benign(0.003) TCGA-BR-4184-01 17 29645508 29645508 C T EVI2A Missense_Mutation p.R198H 0.21 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 17 29645522 29645522 T A EVI2A Missense_Mutation p.K193N 0.22 deleterious(0.02) benign(0.221) TCGA-BR-4184-01 17 2966556 2966556 C T OR1D5 Missense_Mutation p.A116T 0.33 tolerated(0.39) probably_damaging(0.96) TCGA-BR-4184-01 17 3030350 3030350 G A OR1G1 Silent p.L166L 0.29 TCGA-BR-4184-01 17 30551868 30551868 T G RHOT1 3'UTR 0.35 TCGA-BR-4184-01 17 31087632 31087632 C T MYO1D Missense_Mutation p.R350H 0.23 deleterious(0.01) probably_damaging(0.99) TCGA-BR-4184-01 17 3181297 3181297 C T OR3A2 Nonsense_Mutation p.W311* 0.27 TCGA-BR-4184-01 17 3324325 3324325 C A OR3A3 Missense_Mutation p.A155D 0.27 deleterious(0.01) possibly_damaging(0.76) TCGA-BR-4184-01 17 33255998 33255998 T - CCT6B Frame_Shift_Del p.K502Nfs*9 0.10 TCGA-BR-4184-01 17 33266272 33266272 C A CCT6B Missense_Mutation p.K381N 0.16 tolerated(0.09) benign(0.029) TCGA-BR-4184-01 17 33326437 33326437 A G LIG3 Missense_Mutation p.Q742R 0.14 deleterious(0.01) probably_damaging(0.988) TCGA-BR-4184-01 17 3336709 3336709 C T OR1E2 Missense_Mutation p.A143T 0.29 tolerated(1) benign(0.001) TCGA-BR-4184-01 17 33586592 33586592 G A SLFN5 Missense_Mutation p.A295T 0.11 deleterious(0.03) probably_damaging(0.982) TCGA-BR-4184-01 17 33591298 33591298 G A SLFN5 Missense_Mutation p.R412H 0.20 tolerated(0.38) benign(0.328) TCGA-BR-4184-01 17 33902762 33902762 C T PEX12 3'UTR 0.31 TCGA-BR-4184-01 17 34068171 34068171 C T RASL10B Silent p.C153C 0.37 TCGA-BR-4184-01 17 34106032 34106032 C T MMP28 Missense_Mutation p.R80H 0.31 tolerated(0.28) benign(0.005) TCGA-BR-4184-01 17 3476959 3476959 C T SHPK Missense_Mutation p.A691T 0.11 tolerated(0.26) possibly_damaging(0.626) TCGA-BR-4184-01 17 3489183 3489183 C T SHPK Missense_Mutation p.R421Q 0.34 tolerated(0.4) benign(0.065) TCGA-BR-4184-01 17 35478337 35478337 G A ACACA Missense_Mutation p.R2072W 0.08 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 17 35603887 35603887 C T ACACA Missense_Mutation p.R772H 0.08 deleterious(0.01) probably_damaging(0.997) TCGA-BR-4184-01 17 3665218 3665218 G A ITGAE Silent p.H102H 0.25 TCGA-BR-4184-01 17 37682159 37682159 C T CDK12 Missense_Mutation p.A1117V 0.25 probably_damaging(0.993) TCGA-BR-4184-01 17 3773157 3773157 C T CAMKK1 Missense_Mutation p.D422N 0.30 deleterious(0.04) benign(0.071) TCGA-BR-4184-01 17 37948990 37948990 G A IKZF3 Silent p.C120C 0.25 TCGA-BR-4184-01 17 38450699 38450699 T C CDC6 Missense_Mutation p.F343L 0.10 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 17 38546381 38546381 T - TOP2A Frame_Shift_Del p.R1435Gfs*13 0.30 TCGA-BR-4184-01 17 38557134 38557134 G A TOP2A Missense_Mutation p.R878C 0.25 deleterious(0.01) benign(0.128) TCGA-BR-4184-01 17 38710992 38710992 G A CCR7 3'UTR 0.22 TCGA-BR-4184-01 17 38936056 38936056 C A KRT27 Missense_Mutation p.A248S 0.28 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 17 39149944 39149944 T A KRTAP3-3 3'UTR 0.16 TCGA-BR-4184-01 17 39191019 39191019 T C KRTAP1-3 Missense_Mutation p.T19A 0.14 tolerated(0.06) unknown(0) TCGA-BR-4184-01 17 39254140 39254140 C T KRTAP4-8 Missense_Mutation p.R66H 0.45 tolerated(0.07) unknown(0) TCGA-BR-4184-01 17 39645870 39645870 A G KRT36 Missense_Mutation p.W83R 0.08 tolerated(0.06) benign(0.006) TCGA-BR-4184-01 17 39661466 39661466 C T KRT13 Missense_Mutation p.D113N 0.18 deleterious(0.02) possibly_damaging(0.612) TCGA-BR-4184-01 17 40009980 40009980 G A KLHL11 3'UTR 0.29 TCGA-BR-4184-01 17 40134398 40134398 T - DNAJC7 Frame_Shift_Del p.N369Mfs*6 0.29 TCGA-BR-4184-01 17 40265766 40265766 G A KAT2A Silent p.R805R 0.23 TCGA-BR-4184-01 17 40280741 40280741 G A RAB5C Missense_Mutation p.R115W 0.20 deleterious(0) probably_damaging(0.989) TCGA-BR-4184-01 17 40476753 40476753 T C STAT3 Missense_Mutation p.T526A 0.34 tolerated(0.54) benign(0.042) TCGA-BR-4184-01 17 40489528 40489528 G T STAT3 Missense_Mutation p.A241D 0.36 tolerated(0.65) possibly_damaging(0.69) TCGA-BR-4184-01 17 40845456 40845456 G A CNTNAP1 Missense_Mutation p.R965Q 0.30 tolerated(0.25) benign(0.039) TCGA-BR-4184-01 17 40947525 40947525 C T WNK4 Missense_Mutation p.A1003V 0.31 tolerated(0.09) benign(0.198) TCGA-BR-4184-01 17 40958800 40958800 C T CNTD1 Missense_Mutation p.A230V 0.11 tolerated(0.9) benign(0.004) TCGA-BR-4184-01 17 41601271 41601271 C T DHX8 3'UTR 0.17 TCGA-BR-4184-01 17 41891392 41891392 G A MPP3 Silent p.G414G 0.31 TCGA-BR-4184-01 17 42232005 42232005 G A C17orf53 Missense_Mutation p.A512T 0.10 deleterious(0) probably_damaging(0.963) TCGA-BR-4184-01 17 42335832 42335832 G A SLC4A1 Missense_Mutation p.R346C 0.25 deleterious(0) probably_damaging(0.996) TCGA-BR-4184-01 17 42476588 42476588 G A GPATCH8 Missense_Mutation p.R953C 0.21 deleterious(0) unknown(0) TCGA-BR-4184-01 17 42476724 42476724 G A GPATCH8 Silent p.R907R 0.23 TCGA-BR-4184-01 17 42580708 42580708 C T GPATCH8 Missense_Mutation p.D11N 0.53 deleterious_low_confidence(0.02) benign(0.366) TCGA-BR-4184-01 17 42956967 42956967 C T EFTUD2 Missense_Mutation p.R220H 0.26 deleterious(0.01) probably_damaging(0.998) TCGA-BR-4184-01 17 43195797 43195797 C - PLCD3 Frame_Shift_Del p.A326Lfs*14 0.30 TCGA-BR-4184-01 17 43315992 43315992 A G FMNL1 Missense_Mutation p.N319S 0.22 tolerated(0.08) unknown(0) TCGA-BR-4184-01 17 43351908 43351908 G A MAP3K14 RNA 0.13 TCGA-BR-4184-01 17 43480123 43480124 GA - ARHGAP27 Frame_Shift_Del p.S226Lfs*9 0.19 TCGA-BR-4184-01 17 44115975 44115975 G A KANSL1 Nonsense_Mutation p.R824* 0.35 TCGA-BR-4184-01 17 44845861 44845861 C T WNT3 Missense_Mutation p.R298Q 0.27 deleterious(0) probably_damaging(0.972) TCGA-BR-4184-01 17 44846086 44846086 G A WNT3 Missense_Mutation p.A223V 0.19 tolerated(0.1) benign(0.14) TCGA-BR-4184-01 17 44851186 44851186 C T WNT3 Missense_Mutation p.R57H 0.43 deleterious(0) probably_damaging(0.953) TCGA-BR-4184-01 17 45368350 45368350 C T ITGB3 Missense_Mutation p.R386C 0.25 tolerated(0.18) probably_damaging(0.962) TCGA-BR-4184-01 17 45473297 45473297 A - EFCAB13 Frame_Shift_Del p.K635Rfs*5 0.18 TCGA-BR-4184-01 17 45915225 45915225 G A SCRN2 Silent p.S421S 0.25 TCGA-BR-4184-01 17 45915694 45915694 C T SCRN2 Missense_Mutation p.R354H 0.44 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 17 46607897 46607897 A G HOXB1 Missense_Mutation p.S124P 0.15 tolerated(0.48) benign(0.002) TCGA-BR-4184-01 17 4713066 4713066 G A PLD2 Missense_Mutation p.R232H 0.28 tolerated(0.09) probably_damaging(0.999) TCGA-BR-4184-01 17 4718853 4718853 C T PLD2 Missense_Mutation p.A419V 0.27 tolerated(0.11) benign(0.002) TCGA-BR-4184-01 17 47247084 47247084 C T B4GALNT2 Silent p.A565A 0.11 TCGA-BR-4184-01 17 47295191 47295191 G A ABI3 Missense_Mutation p.A126T 0.29 tolerated(0.12) benign(0.002) TCGA-BR-4184-01 17 47486737 47486737 G A PHB Missense_Mutation p.R117C 0.40 deleterious(0.02) benign(0.04) TCGA-BR-4184-01 17 47583719 47583719 C T NGFR Silent p.C89C 0.42 TCGA-BR-4184-01 17 47898713 47898713 G A KAT7 Nonsense_Mutation p.W390* 0.21 TCGA-BR-4184-01 17 48145498 48145498 C T ITGA3 Nonsense_Mutation p.R165* 0.10 TCGA-BR-4184-01 17 48212980 48212980 G A PPP1R9B Missense_Mutation p.R778C 0.36 deleterious(0.01) probably_damaging(0.943) TCGA-BR-4184-01 17 48274561 48274561 G A COL1A1 Missense_Mutation p.R244C 0.32 unknown(0) TCGA-BR-4184-01 17 48433538 48433538 C A XYLT2 Silent p.G466G 0.13 TCGA-BR-4184-01 17 48614339 48614339 G A EPN3 Missense_Mutation p.R141Q 0.24 deleterious(0) benign(0.337) TCGA-BR-4184-01 17 49119004 49119004 C T SPAG9 Missense_Mutation p.R200H 0.26 tolerated(0.06) probably_damaging(0.932) TCGA-BR-4184-01 17 4917019 4917019 C T KIF1C Silent p.G521G 0.19 TCGA-BR-4184-01 17 5041523 5041523 T G USP6 Missense_Mutation p.S345A 0.07 deleterious_low_confidence(0.02) benign(0.097) TCGA-BR-4184-01 17 51901021 51901021 G A KIF2B Silent p.P209P 0.24 TCGA-BR-4184-01 17 5264866 5264866 G T RABEP1 Missense_Mutation p.A487S 0.26 deleterious(0.03) probably_damaging(0.999) TCGA-BR-4184-01 17 526892 526892 G A VPS53 Missense_Mutation p.R333C 0.23 tolerated(0.06) benign(0.008) TCGA-BR-4184-01 17 5280477 5280477 G A RABEP1 Missense_Mutation p.V698I 0.32 tolerated(0.38) benign(0.04) TCGA-BR-4184-01 17 5312224 5312224 G A NUP88 Missense_Mutation p.A229V 0.23 deleterious(0.01) benign(0.401) TCGA-BR-4184-01 17 5364373 5364373 G A DHX33 Silent p.G245G 0.14 TCGA-BR-4184-01 17 5365851 5365851 G A DHX33 Missense_Mutation p.R156C 0.09 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 17 53798230 53798230 C T TMEM100 Missense_Mutation p.G68S 0.31 deleterious(0.04) probably_damaging(0.999) TCGA-BR-4184-01 17 5436264 5436264 G A NLRP1 Silent p.C1058C 0.17 TCGA-BR-4184-01 17 54543825 54543825 T - ANKFN1 Frame_Shift_Del p.F560Lfs*27 0.10 TCGA-BR-4184-01 17 54976496 54976496 C T TRIM25 Missense_Mutation p.R378H 0.22 tolerated(0.27) benign(0.002) TCGA-BR-4184-01 17 56326511 56326511 G A LPO Missense_Mutation p.R139H 0.37 deleterious(0.01) probably_damaging(0.986) TCGA-BR-4184-01 17 56435094 56435094 A - RNF43 Frame_Shift_Del p.H683Ifs*17 0.21 TCGA-BR-4184-01 17 56435161 56435161 C - RNF43 Frame_Shift_Del p.G659Vfs*41 0.34 TCGA-BR-4184-01 17 57058136 57058136 G A PPM1E Missense_Mutation p.R671H 0.25 tolerated_low_confidence(0.33) benign(0.004) TCGA-BR-4184-01 17 57725723 57725723 G A CLTC Silent p.T214T 0.31 TCGA-BR-4184-01 17 58365944 58365944 T C USP32 Missense_Mutation p.T171A 0.24 deleterious(0.02) probably_damaging(0.952) TCGA-BR-4184-01 17 58740851 58740851 G A PPM1D Missense_Mutation p.G586S 0.07 tolerated_low_confidence(0.13) benign(0.343) TCGA-BR-4184-01 17 59155837 59155837 G A BCAS3 Silent p.T773T 0.12 TCGA-BR-4184-01 17 59556066 59556066 A - TBX4 Frame_Shift_Del p.N211Tfs*17 0.29 TCGA-BR-4184-01 17 59971251 59971251 C T INTS2 Missense_Mutation p.A533T 0.35 tolerated(0.08) probably_damaging(0.996) TCGA-BR-4184-01 17 60087922 60087922 T C MED13 Silent p.T652T 0.20 TCGA-BR-4184-01 17 6023723 6023723 C T WSCD1 Silent p.Y490Y 0.27 TCGA-BR-4184-01 17 60673966 60673966 G A TLK2 Missense_Mutation p.R494Q 0.17 tolerated(0.15) benign(0.334) TCGA-BR-4184-01 17 60879031 60879031 C T MARCH10 Silent p.Q22Q 0.20 TCGA-BR-4184-01 17 61559950 61559950 C T ACE Silent p.P414P 0.18 TCGA-BR-4184-01 17 61571353 61571353 C T ACE Silent p.V1069V 0.25 TCGA-BR-4184-01 17 61611628 61611628 G A KCNH6 Missense_Mutation p.A353T 0.31 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 17 61666545 61666545 G A DCAF7 3'UTR 0.30 TCGA-BR-4184-01 17 61895700 61895700 C T DDX42 Missense_Mutation p.A920V 0.28 tolerated_low_confidence(0.2) benign(0.016) TCGA-BR-4184-01 17 61897319 61897319 C T FTSJ3 Missense_Mutation p.R796H 0.23 deleterious(0.03) benign(0.032) TCGA-BR-4184-01 17 61972426 61972426 G A CSH1 Missense_Mutation p.R204C 0.18 deleterious(0.01) benign(0.329) TCGA-BR-4184-01 17 62026054 62026054 G A SCN4A Missense_Mutation p.R1021C 0.18 deleterious(0) probably_damaging(0.989) TCGA-BR-4184-01 17 62574630 62574630 C T SMURF2 Nonsense_Mutation p.W279* 0.08 TCGA-BR-4184-01 17 63133598 63133598 G - RGS9 5'UTR 0.41 TCGA-BR-4184-01 17 63221135 63221135 G T RGS9 Missense_Mutation p.A475S 0.08 tolerated(0.39) benign(0.017) TCGA-BR-4184-01 17 6358942 6358942 C T PITPNM3 Missense_Mutation p.A881T 0.47 deleterious(0.03) benign(0.228) TCGA-BR-4184-01 17 650203 650203 C T GEMIN4 Silent p.T360T 0.28 TCGA-BR-4184-01 17 6511780 6511780 C T KIAA0753 Missense_Mutation p.A573T 0.19 deleterious(0.04) benign(0.26) TCGA-BR-4184-01 17 6544532 6544532 C T TXNDC17 Missense_Mutation p.P44S 0.34 tolerated(0.07) possibly_damaging(0.563) TCGA-BR-4184-01 17 65740086 65740086 C T NOL11 3'UTR 0.25 TCGA-BR-4184-01 17 65850239 65850239 G A BPTF Missense_Mutation p.R266H 0.23 probably_damaging(0.91) TCGA-BR-4184-01 17 65908478 65908478 C T BPTF Missense_Mutation p.A1493V 0.27 benign(0.209) TCGA-BR-4184-01 17 65916176 65916176 G T BPTF Missense_Mutation p.R1825I 0.06 probably_damaging(0.999) TCGA-BR-4184-01 17 66511578 66511578 G A PRKAR1A Missense_Mutation p.R13H 0.12 deleterious(0.03) benign(0.172) TCGA-BR-4184-01 17 66864467 66864467 C T ABCA8 Missense_Mutation p.S1541N 0.24 deleterious(0.03) benign(0.32) TCGA-BR-4184-01 17 67016615 67016615 G A ABCA9 Silent p.G838G 0.29 TCGA-BR-4184-01 17 67096998 67096998 C T ABCA6 Silent p.G984G 0.11 TCGA-BR-4184-01 17 67102220 67102220 G A ABCA6 Missense_Mutation p.A841V 0.27 deleterious(0.01) probably_damaging(0.984) TCGA-BR-4184-01 17 67210910 67210910 A - ABCA10 Frame_Shift_Del p.F314Sfs*11 0.26 TCGA-BR-4184-01 17 67212456 67212456 A G ABCA10 Missense_Mutation p.S192P 0.27 deleterious(0) probably_damaging(0.974) TCGA-BR-4184-01 17 67252377 67252377 T G ABCA5 Missense_Mutation p.D1260A 0.27 tolerated(0.43) benign(0.001) TCGA-BR-4184-01 17 6927806 6927806 G A BCL6B Missense_Mutation p.R163H 0.22 deleterious(0.01) possibly_damaging(0.708) TCGA-BR-4184-01 17 6927858 6927858 C - BCL6B Frame_Shift_Del p.S183Vfs*20 0.11 TCGA-BR-4184-01 17 694821 694821 G A RNMTL1 Missense_Mutation p.A259T 0.24 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 17 7077269 7077269 C T ASGR1 Intron 0.27 TCGA-BR-4184-01 17 71197469 71197469 C T COG1 Silent p.S501S 0.29 TCGA-BR-4184-01 17 7226176 7226176 G A NEURL4 Missense_Mutation p.A868V 0.24 deleterious(0.01) possibly_damaging(0.849) TCGA-BR-4184-01 17 7228773 7228773 C T NEURL4 Silent p.T462T 0.28 TCGA-BR-4184-01 17 72352858 72352858 C T BTBD17 Missense_Mutation p.A459T 0.15 tolerated(0.21) benign(0.066) TCGA-BR-4184-01 17 73126506 73126506 G A NT5C 3'UTR 0.29 TCGA-BR-4184-01 17 73126663 73126663 T C NT5C Missense_Mutation p.T176A 0.09 tolerated(0.12) benign(0.002) TCGA-BR-4184-01 17 73235918 73235918 G A GGA3 Missense_Mutation p.A512V 0.22 tolerated(0.12) benign(0.069) TCGA-BR-4184-01 17 7350413 7350413 C T CHRNB1 Silent p.S135S 0.30 TCGA-BR-4184-01 17 73567852 73567852 C T LLGL2 Missense_Mutation p.R761W 0.10 deleterious(0.03) benign(0.001) TCGA-BR-4184-01 17 73702633 73702633 C T SAP30BP 3'UTR 0.38 TCGA-BR-4184-01 17 74005331 74005331 G A EVPL Missense_Mutation p.R1319C 0.10 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 17 7401440 7401440 G A POLR2A Missense_Mutation p.A416T 0.31 probably_damaging(0.999) TCGA-BR-4184-01 17 7406984 7406984 G A POLR2A Silent p.T1038T 0.12 TCGA-BR-4184-01 17 74289360 74289360 C T QRICH2 Missense_Mutation p.R317H 0.10 tolerated(0.53) benign(0.015) TCGA-BR-4184-01 17 74527194 74527194 C T CYGB Missense_Mutation p.A136T 0.18 tolerated(0.11) benign(0.038) TCGA-BR-4184-01 17 7577548 7577548 C G TP53 Missense_Mutation p.G245R 0.25 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 17 76046100 76046100 C T TNRC6C Silent p.G319G 0.26 TCGA-BR-4184-01 17 7612856 7612856 C - EFNB3 Frame_Shift_Del p.Q331Rfs*39 0.35 TCGA-BR-4184-01 17 76354897 76354897 G A SOCS3 Missense_Mutation p.R94C 0.27 deleterious(0) probably_damaging(0.951) TCGA-BR-4184-01 17 7646274 7646274 G A DNAH2 Missense_Mutation p.R573H 0.21 benign(0.001) TCGA-BR-4184-01 17 7661926 7661926 C T DNAH2 Missense_Mutation p.A722V 0.19 benign(0.089) TCGA-BR-4184-01 17 77082286 77082286 G A ENGASE Missense_Mutation p.R696Q 0.19 deleterious(0.01) probably_damaging(0.995) TCGA-BR-4184-01 17 7751760 7751760 C T KDM6B Silent p.G718G 0.19 TCGA-BR-4184-01 17 78013765 78013765 C T CCDC40 Missense_Mutation p.A83V 0.21 tolerated_low_confidence(0.6) benign(0.002) TCGA-BR-4184-01 17 78055728 78055728 C T CCDC40 Silent p.G620G 0.30 TCGA-BR-4184-01 17 7812021 7812021 C T CHD3 Silent p.G1815G 0.08 TCGA-BR-4184-01 17 7826435 7826435 C T KCNAB3 Silent p.P400P 0.30 TCGA-BR-4184-01 17 78317021 78317021 G A RNF213 Missense_Mutation p.D2027N 0.18 benign(0.039) TCGA-BR-4184-01 17 78854244 78854244 C T RPTOR Silent p.N513N 0.11 TCGA-BR-4184-01 17 79671731 79671731 T A SLC25A10 Silent p.A110A 0.40 TCGA-BR-4184-01 17 80037254 80037254 G A FASN Silent p.G2459G 0.21 TCGA-BR-4184-01 17 80038074 80038074 G A FASN Missense_Mutation p.A2363V 0.17 tolerated(0.27) possibly_damaging(0.454) TCGA-BR-4184-01 17 80040218 80040218 C T FASN Missense_Mutation p.G1998S 0.12 deleterious(0.03) probably_damaging(0.992) TCGA-BR-4184-01 17 80772782 80772782 C T TBCD Silent p.G430G 0.20 TCGA-BR-4184-01 17 80900419 80900419 G A TBCD 3'UTR 0.22 TCGA-BR-4184-01 17 8141902 8141902 G A CTC1 Silent p.C81C 0.31 TCGA-BR-4184-01 17 8526285 8526285 T C MYH10 Missense_Mutation p.T94A 0.28 probably_damaging(0.991) TCGA-BR-4184-01 17 8789551 8789551 G A PIK3R5 Missense_Mutation p.A708V 0.31 deleterious(0) probably_damaging(0.964) TCGA-BR-4184-01 17 8791611 8791611 C T PIK3R5 Missense_Mutation p.R498H 0.35 tolerated(0.6) benign(0.005) TCGA-BR-4184-01 17 8926018 8926018 G A NTN1 Missense_Mutation p.D110N 0.25 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 17 9559771 9559771 G A USP43 Missense_Mutation p.A186T 0.28 deleterious(0) probably_damaging(0.972) TCGA-BR-4184-01 17 9674988 9674988 G A DHRS7C Silent p.G252G 0.56 TCGA-BR-4184-01 17 9739794 9739794 T C GLP2R Splice_Site p.X128_splice 0.24 TCGA-BR-4184-01 18 11897092 11897092 C T MPPE1 Missense_Mutation p.A58T 0.10 tolerated(0.14) benign(0.002) TCGA-BR-4184-01 18 120869 120869 T - ROCK1P1 RNA 0.43 TCGA-BR-4184-01 18 12817195 12817195 C T PTPN2 Missense_Mutation p.R222H 0.24 deleterious(0.02) benign(0.18) TCGA-BR-4184-01 18 14124358 14124358 C T ZNF519 Missense_Mutation p.V41I 0.13 tolerated(0.06) benign(0.318) TCGA-BR-4184-01 18 14479149 14479149 G A CXADRP3 RNA 0.16 TCGA-BR-4184-01 18 18622132 18622132 A T ROCK1 Missense_Mutation p.N295K 0.09 deleterious(0.02) possibly_damaging(0.785) TCGA-BR-4184-01 18 21140277 21140277 C T NPC1 Missense_Mutation p.A267T 0.52 deleterious(0.01) probably_damaging(0.957) TCGA-BR-4184-01 18 22048786 22048786 G A HRH4 Silent p.T76T 0.09 TCGA-BR-4184-01 18 24497286 24497286 A G CHST9 Missense_Mutation p.V90A 0.07 tolerated(0.93) benign(0.001) TCGA-BR-4184-01 18 2724949 2724949 C T SMCHD1 Nonsense_Mutation p.R886* 0.12 TCGA-BR-4184-01 18 28671070 28671070 C T DSC2 Missense_Mutation p.R132H 0.08 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 18 28714691 28714691 C T DSC1 Missense_Mutation p.A574T 0.23 tolerated(0.47) benign(0.033) TCGA-BR-4184-01 18 29049154 29049154 G A DSG3 Missense_Mutation p.R580H 0.19 tolerated(0.3) benign(0.002) TCGA-BR-4184-01 18 29125953 29125953 T C DSG2 Silent p.H868H 0.18 TCGA-BR-4184-01 18 29412060 29412060 G A TRAPPC8 Missense_Mutation p.H1354Y 0.09 deleterious(0.03) probably_damaging(0.968) TCGA-BR-4184-01 18 29488331 29488331 T - TRAPPC8 Frame_Shift_Del p.K391Nfs*16 0.10 TCGA-BR-4184-01 18 30254520 30254520 G A KLHL14 3'UTR 0.29 TCGA-BR-4184-01 18 30321990 30321990 G A KLHL14 Silent p.L324L 0.33 TCGA-BR-4184-01 18 31709979 31709979 G A NOL4 Silent p.G90G 0.35 TCGA-BR-4184-01 18 3277382 3277382 G A MYL12B Missense_Mutation p.A106T 0.36 deleterious(0.01) possibly_damaging(0.849) TCGA-BR-4184-01 18 33263470 33263470 G A GALNT1 Silent p.V199V 0.58 TCGA-BR-4184-01 18 33785068 33785068 C A MOCOS Silent p.T349T 0.22 TCGA-BR-4184-01 18 33846728 33846728 A G MOCOS Missense_Mutation p.H809R 0.20 tolerated(0.14) possibly_damaging(0.506) TCGA-BR-4184-01 18 34205516 34205516 C - FHOD3 Frame_Shift_Del p.S336Vfs*138 0.44 TCGA-BR-4184-01 18 34349305 34349305 C T FHOD3 Missense_Mutation p.R1385C 0.47 deleterious(0.02) probably_damaging(0.949) TCGA-BR-4184-01 18 34854311 34854311 G A CELF4 Missense_Mutation p.A255V 0.57 tolerated(0.16) possibly_damaging(0.665) TCGA-BR-4184-01 18 42531132 42531132 C T SETBP1 Silent p.P609P 0.37 TCGA-BR-4184-01 18 43481010 43481010 C T EPG5 Missense_Mutation p.A1533T 0.19 tolerated(0.47) benign(0) TCGA-BR-4184-01 18 46163043 46163043 C - CTIF Frame_Shift_Del p.P82Hfs*77 0.37 TCGA-BR-4184-01 18 47329200 47329200 G A ACAA2 Nonsense_Mutation p.R14* 0.25 TCGA-BR-4184-01 18 47566549 47566549 G A MYO5B Missense_Mutation p.R92C 0.16 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 18 48473598 48473598 T - ME2 3'UTR 0.13 TCGA-BR-4184-01 18 48593465 48593465 G A SMAD4 Missense_Mutation p.A406T 0.43 deleterious(0.01) possibly_damaging(0.894) TCGA-BR-4184-01 18 50923715 50923715 G A DCC Missense_Mutation p.G909D 0.19 tolerated(0.22) benign(0.071) TCGA-BR-4184-01 18 52609944 52609944 A G CCDC68 Missense_Mutation p.S27P 0.17 tolerated(0.26) benign(0.014) TCGA-BR-4184-01 18 5292149 5292149 T C ZBTB14 Missense_Mutation p.T20A 0.19 tolerated(0.23) benign(0.002) TCGA-BR-4184-01 18 52946880 52946880 G A TCF4 Missense_Mutation p.A288V 0.28 tolerated(0.09) probably_damaging(0.953) TCGA-BR-4184-01 18 5407700 5407700 C A EPB41L3 Missense_Mutation p.Q719H 0.18 deleterious(0) possibly_damaging(0.908) TCGA-BR-4184-01 18 55020138 55020138 G A ST8SIA3 Missense_Mutation p.A21T 0.38 possibly_damaging(0.821) TCGA-BR-4184-01 18 55218072 55218072 C T FECH Missense_Mutation p.A388T 0.11 deleterious(0.04) probably_damaging(0.984) TCGA-BR-4184-01 18 55238802 55238802 T - FECH Intron 0.11 TCGA-BR-4184-01 18 56205101 56205101 G A ALPK2 Missense_Mutation p.A773V 0.25 tolerated(0.08) benign(0.012) TCGA-BR-4184-01 18 56412961 56412961 G A MALT1 Missense_Mutation p.V659I 0.17 tolerated(0.19) benign(0.064) TCGA-BR-4184-01 18 56587202 56587202 G A ZNF532 Silent p.S561S 0.14 TCGA-BR-4184-01 18 58038852 58038852 G A MC4R Missense_Mutation p.A244V 0.46 deleterious(0.02) probably_damaging(0.996) TCGA-BR-4184-01 18 5892007 5892007 C T TMEM200C Missense_Mutation p.R19H 0.28 deleterious(0.02) probably_damaging(0.991) TCGA-BR-4184-01 18 59195390 59195390 C T CDH20 Missense_Mutation p.A403V 0.20 tolerated(0.15) benign(0.002) TCGA-BR-4184-01 18 59221532 59221532 C T CDH20 Silent p.G670G 0.22 TCGA-BR-4184-01 18 60036437 60036437 C T TNFRSF11A Silent p.G429G 0.27 TCGA-BR-4184-01 18 60242530 60242530 T - ZCCHC2 Frame_Shift_Del p.L1075Cfs*42 0.36 TCGA-BR-4184-01 18 61225704 61225704 G T SERPINB12 Intron 0.17 TCGA-BR-4184-01 18 61569049 61569049 T G SERPINB2 Missense_Mutation p.F204C 0.20 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 18 63477140 63477140 G A CDH7 Silent p.S137S 0.27 TCGA-BR-4184-01 18 66513554 66513554 C T CCDC102B Missense_Mutation p.R278C 0.22 deleterious(0) probably_damaging(0.949) TCGA-BR-4184-01 18 67727254 67727254 C T RTTN Missense_Mutation p.R1591Q 0.16 tolerated(0.62) benign(0.001) TCGA-BR-4184-01 18 677835 677835 G A ENOSF1 Missense_Mutation p.A326V 0.28 deleterious(0.01) benign(0.026) TCGA-BR-4184-01 18 67860572 67860572 C T RTTN Missense_Mutation p.G320D 0.15 tolerated(0.62) benign(0.284) TCGA-BR-4184-01 18 6956445 6956445 G A LAMA1 Intron 0.55 TCGA-BR-4184-01 18 6964747 6964747 G A LAMA1 Silent p.G2417G 0.10 TCGA-BR-4184-01 18 7046313 7046313 G A LAMA1 Silent p.G274G 0.41 TCGA-BR-4184-01 18 72173240 72173240 C T CNDP2 Nonsense_Mutation p.R121* 0.34 TCGA-BR-4184-01 18 72999217 72999217 G A TSHZ1 Missense_Mutation p.A574T 0.32 tolerated(0.45) benign(0.014) TCGA-BR-4184-01 18 72999371 72999371 C T TSHZ1 Missense_Mutation p.A625V 0.09 tolerated(0.36) benign(0) TCGA-BR-4184-01 18 72999579 72999579 G A TSHZ1 Silent p.E694E 0.21 TCGA-BR-4184-01 18 72999867 72999867 C T TSHZ1 Silent p.S790S 0.08 TCGA-BR-4184-01 18 74154862 74154862 G A ZNF516 Missense_Mutation p.S50L 0.31 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 18 74593430 74593430 A G ZNF236 Missense_Mutation p.E458G 0.30 deleterious(0.01) benign(0.031) TCGA-BR-4184-01 18 77090061 77090061 C T ATP9B Missense_Mutation p.A662V 0.18 tolerated(1) benign(0.001) TCGA-BR-4184-01 18 77133950 77133950 C T ATP9B Silent p.H1041H 0.10 TCGA-BR-4184-01 18 77246433 77246433 G A NFATC1 Missense_Mutation p.A747T 0.18 tolerated(0.21) benign(0.002) TCGA-BR-4184-01 18 77475079 77475079 G C CTDP1 Missense_Mutation p.G540A 0.12 tolerated(0.1) benign(0.089) TCGA-BR-4184-01 18 77659090 77659090 C T KCNG2 Silent p.C225C 0.24 TCGA-BR-4184-01 18 77703340 77703340 C T PQLC1 Missense_Mutation p.R109H 0.16 tolerated(0.25) benign(0.048) TCGA-BR-4184-01 18 77896106 77896106 G A ADNP2 Missense_Mutation p.R937H 0.09 tolerated(0.21) benign(0.041) TCGA-BR-4184-01 18 8343455 8343455 G A PTPRM Silent p.R997R 0.53 TCGA-BR-4184-01 18 8720396 8720396 G A SOGA2 Missense_Mutation p.A87T 0.08 tolerated(0.2) benign(0.012) TCGA-BR-4184-01 18 9281237 9281237 C T ANKRD12 3'UTR 0.26 TCGA-BR-4184-01 19 1005443 1005443 T A GRIN3B Missense_Mutation p.L648H 0.31 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 19 10073525 10073525 G A COL5A3 Silent p.G1607G 0.17 TCGA-BR-4184-01 19 10203294 10203294 C T ANGPTL6 Missense_Mutation p.A462T 0.13 tolerated(0.58) benign(0.035) TCGA-BR-4184-01 19 10221526 10221526 C T PPAN Silent p.G395G 0.23 TCGA-BR-4184-01 19 10252856 10252856 C T DNMT1 Missense_Mutation p.A1053T 0.17 tolerated(0.3) benign(0.013) TCGA-BR-4184-01 19 10367487 10367487 C T MRPL4 Missense_Mutation p.P144L 0.26 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 19 10370451 10370451 G A MRPL4 Missense_Mutation p.A300T 0.52 tolerated_low_confidence(0.22) benign(0.136) TCGA-BR-4184-01 19 10428050 10428050 A - RAVER1 3'UTR 0.39 TCGA-BR-4184-01 19 10476334 10476334 G T TYK2 Silent p.P290P 0.40 TCGA-BR-4184-01 19 10502208 10502208 C T CDC37 3'UTR 0.23 TCGA-BR-4184-01 19 10610610 10610610 C T KEAP1 Missense_Mutation p.A34T 0.24 tolerated(0.14) benign(0.151) TCGA-BR-4184-01 19 10663693 10663693 C T ATG4D Missense_Mutation p.R459W 0.19 deleterious(0) benign(0.018) TCGA-BR-4184-01 19 10678072 10678072 C T CDKN2D Missense_Mutation p.A55T 0.27 tolerated(0.56) benign(0.001) TCGA-BR-4184-01 19 10793873 10793873 C T ILF3 Missense_Mutation p.R541C 0.13 deleterious(0) probably_damaging(0.949) TCGA-BR-4184-01 19 10940929 10940929 G A DNM2 Silent p.A806A 0.32 TCGA-BR-4184-01 19 11034602 11034602 C T YIPF2 Nonsense_Mutation p.W186* 0.27 TCGA-BR-4184-01 19 11505125 11505125 G A RGL3 Missense_Mutation p.R702W 0.24 deleterious(0) unknown(0) TCGA-BR-4184-01 19 11658702 11658702 C T CNN1 Missense_Mutation p.R161W 0.33 deleterious(0.04) possibly_damaging(0.836) TCGA-BR-4184-01 19 11942881 11942881 G A ZNF440 Missense_Mutation p.R297H 0.15 deleterious(0.04) benign(0.001) TCGA-BR-4184-01 19 11978739 11978739 T C ZNF439 Silent p.C285C 0.21 TCGA-BR-4184-01 19 12089891 12089891 A G ZNF763 Silent p.T387T 0.08 TCGA-BR-4184-01 19 1272348 1272348 G A CIRBP Intron 0.17 TCGA-BR-4184-01 19 12812201 12812201 G A TNPO2 Missense_Mutation p.P885S 0.40 tolerated(0.1) benign(0.104) TCGA-BR-4184-01 19 12826457 12826457 T G TNPO2 Missense_Mutation p.N141T 0.46 tolerated(0.14) benign(0.005) TCGA-BR-4184-01 19 12924174 12924174 T C RNASEH2A Missense_Mutation p.L265P 0.24 tolerated(0.3) benign(0.001) TCGA-BR-4184-01 19 13010517 13010517 T G GCDH 3'UTR 0.11 TCGA-BR-4184-01 19 14034522 14034522 C T CC2D1A Missense_Mutation p.A613V 0.08 deleterious(0.04) possibly_damaging(0.883) TCGA-BR-4184-01 19 14208239 14208239 G A PRKACA Silent p.A233A 0.18 TCGA-BR-4184-01 19 14266322 14266322 G A LPHN1 Missense_Mutation p.A1053V 0.26 deleterious(0) probably_damaging(0.962) TCGA-BR-4184-01 19 14554393 14554393 C T PKN1 Missense_Mutation p.A151V 0.25 deleterious(0.05) possibly_damaging(0.46) TCGA-BR-4184-01 19 1460307 1460307 C T APC2 Silent p.D477D 0.40 TCGA-BR-4184-01 19 14815942 14815942 G A ZNF333 Missense_Mutation p.R128Q 0.19 tolerated_low_confidence(0.34) benign(0.002) TCGA-BR-4184-01 19 14910601 14910601 G A OR7C1 Silent p.T116T 0.19 TCGA-BR-4184-01 19 15166245 15166245 C T CASP14 Silent p.Y175Y 0.21 TCGA-BR-4184-01 19 15224831 15224831 C T SYDE1 3'UTR 0.14 TCGA-BR-4184-01 19 15472567 15472567 C T AKAP8 Missense_Mutation p.A457T 0.09 tolerated(0.84) benign(0.004) TCGA-BR-4184-01 19 15511828 15511828 G A AKAP8L Silent p.G281G 0.22 TCGA-BR-4184-01 19 15807839 15807839 C T CYP4F12 Missense_Mutation p.R507C 0.15 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 19 16790841 16790841 C T TMEM38A Silent p.C57C 0.37 TCGA-BR-4184-01 19 16918398 16918398 C T NWD1 Silent p.G1246G 0.25 TCGA-BR-4184-01 19 17295741 17295741 C T MYO9B Missense_Mutation p.S814F 0.23 deleterious(0.02) probably_damaging(1) TCGA-BR-4184-01 19 17362446 17362446 G A USHBP1 Nonsense_Mutation p.R623* 0.31 TCGA-BR-4184-01 19 17444229 17444229 G A ANO8 Splice_Site p.X117_splice 0.24 TCGA-BR-4184-01 19 17444267 17444267 C T ANO8 Missense_Mutation p.R105H 0.16 deleterious(0.04) benign(0.034) TCGA-BR-4184-01 19 17444269 17444269 C T ANO8 Silent p.T104T 0.16 TCGA-BR-4184-01 19 17615413 17615413 G A SLC27A1 Missense_Mutation p.A645T 0.40 tolerated(0.3) benign(0.07) TCGA-BR-4184-01 19 17678290 17678290 G A COLGALT1 Missense_Mutation p.A189T 0.23 deleterious(0) probably_damaging(0.935) TCGA-BR-4184-01 19 17973433 17973433 C T RPL18A Intron 0.25 TCGA-BR-4184-01 19 18092607 18092607 C T KCNN1 Silent p.C196C 0.29 TCGA-BR-4184-01 19 18974986 18974986 G A UPF1 Missense_Mutation p.R928H 0.25 tolerated(0.32) benign(0.008) TCGA-BR-4184-01 19 19033426 19033426 G A DDX49 Missense_Mutation p.E217K 0.29 tolerated(0.11) benign(0.011) TCGA-BR-4184-01 19 19040175 19040175 C T HOMER3 3'UTR 0.55 TCGA-BR-4184-01 19 19112441 19112441 C T SUGP2 Missense_Mutation p.R991H 0.27 tolerated(0.07) possibly_damaging(0.84) TCGA-BR-4184-01 19 19153682 19153682 G A ARMC6 Silent p.S64S 0.31 TCGA-BR-4184-01 19 19337827 19337827 C T NCAN Silent p.G535G 0.33 TCGA-BR-4184-01 19 19369400 19369400 C T HAPLN4 Missense_Mutation p.R250H 0.25 deleterious(0) probably_damaging(0.989) TCGA-BR-4184-01 19 19414748 19414748 G - SUGP1 Intron 0.26 TCGA-BR-4184-01 19 19452166 19452166 C T MAU2 Missense_Mutation p.R229C 0.22 deleterious(0) possibly_damaging(0.81) TCGA-BR-4184-01 19 19770544 19770544 G A ATP13A1 Silent p.Y181Y 0.22 TCGA-BR-4184-01 19 19989293 19989293 C T ZNF253 Missense_Mutation p.P3S 0.21 tolerated(0.8) probably_damaging(0.994) TCGA-BR-4184-01 19 20116752 20116752 G A ZNF682 3'UTR 0.26 TCGA-BR-4184-01 19 20807894 20807894 G A ZNF626 Silent p.G263G 0.10 TCGA-BR-4184-01 19 2102153 2102153 C T AP3D1 3'UTR 0.08 TCGA-BR-4184-01 19 2114816 2114816 G A AP3D1 Missense_Mutation p.A785V 0.15 tolerated(0.09) possibly_damaging(0.514) TCGA-BR-4184-01 19 21607422 21607422 A - ZNF493 Frame_Shift_Del p.K655Nfs*23 0.18 TCGA-BR-4184-01 19 21720353 21720353 A - ZNF429 Frame_Shift_Del p.I502Ffs*? 0.18 TCGA-BR-4184-01 19 21992323 21992323 T - ZNF43 Frame_Shift_Del p.K172Nfs*18 0.29 TCGA-BR-4184-01 19 2211140 2211140 C T DOT1L Missense_Mutation p.P465L 0.11 deleterious(0.03) probably_damaging(0.996) TCGA-BR-4184-01 19 22156328 22156328 C T ZNF208 Missense_Mutation p.G503D 0.17 deleterious(0.05) unknown(0) TCGA-BR-4184-01 19 23836656 23836656 T - ZNF675 Frame_Shift_Del p.N360Tfs*169 0.20 TCGA-BR-4184-01 19 23941569 23941569 A G ZNF681 5'UTR 0.28 TCGA-BR-4184-01 19 282274 282274 G A PPAP2C Missense_Mutation p.R214W 0.21 deleterious(0) benign(0.099) TCGA-BR-4184-01 19 2834253 2834253 C T ZNF554 Silent p.S340S 0.24 TCGA-BR-4184-01 19 2852711 2852711 T A ZNF555 Missense_Mutation p.N216K 0.21 tolerated(0.19) probably_damaging(0.998) TCGA-BR-4184-01 19 2852932 2852932 C T ZNF555 Missense_Mutation p.A290V 0.28 deleterious(0) benign(0.202) TCGA-BR-4184-01 19 30313366 30313366 C T CCNE1 Silent p.C322C 0.13 TCGA-BR-4184-01 19 30313453 30313453 C T CCNE1 Silent p.G351G 0.26 TCGA-BR-4184-01 19 30496293 30496293 A - URI1 Frame_Shift_Del p.V134* 0.10 TCGA-BR-4184-01 19 30935717 30935717 C T ZNF536 Silent p.G416G 0.29 TCGA-BR-4184-01 19 312230 312230 C T MIER2 Missense_Mutation p.A284T 0.24 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 19 31769235 31769235 T - TSHZ3 Frame_Shift_Del p.D489Tfs*19 0.17 TCGA-BR-4184-01 19 33096798 33096798 C T ANKRD27 Silent p.T812T 0.11 TCGA-BR-4184-01 19 33355554 33355554 G A SLC7A9 Silent p.C72C 0.22 TCGA-BR-4184-01 19 33464997 33464997 A - C19orf40 Frame_Shift_Del p.T94Pfs*3 0.24 TCGA-BR-4184-01 19 33602674 33602674 C T GPATCH1 Nonsense_Mutation p.R544* 0.27 TCGA-BR-4184-01 19 34002042 34002042 G A PEPD Missense_Mutation p.A74V 0.19 tolerated(0.49) benign(0.004) TCGA-BR-4184-01 19 34263263 34263263 C T CHST8 Silent p.H190H 0.27 TCGA-BR-4184-01 19 34263612 34263612 C T CHST8 Missense_Mutation p.R307C 0.27 deleterious(0) possibly_damaging(0.849) TCGA-BR-4184-01 19 3496805 3496805 G A DOHH Missense_Mutation p.T3M 0.15 deleterious(0.03) possibly_damaging(0.772) TCGA-BR-4184-01 19 3523019 3523019 G A FZR1 Missense_Mutation p.R11H 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.507) TCGA-BR-4184-01 19 35250659 35250659 C T ZNF599 Silent p.T349T 0.10 TCGA-BR-4184-01 19 35434572 35434572 C T ZNF30 Silent p.C235C 0.16 TCGA-BR-4184-01 19 36035728 36035728 C T GAPDHS Intron 0.22 TCGA-BR-4184-01 19 36050941 36050941 G A ATP4A Silent p.D274D 0.22 TCGA-BR-4184-01 19 36120532 36120532 C T RBM42 Missense_Mutation p.A80V 0.24 tolerated(1) probably_damaging(0.937) TCGA-BR-4184-01 19 36219029 36219029 G A KMT2B Missense_Mutation p.A1510T 0.29 probably_damaging(0.959) TCGA-BR-4184-01 19 3624136 3624136 C T CACTIN Nonsense_Mutation p.W64* 0.18 TCGA-BR-4184-01 19 36362782 36362782 C - APLP1 Frame_Shift_Del p.P233Rfs*5 0.20 TCGA-BR-4184-01 19 36583697 36583697 C T WDR62 Missense_Mutation p.R773W 0.19 tolerated(0.13) benign(0) TCGA-BR-4184-01 19 36594764 36594764 G A WDR62 Missense_Mutation p.R1345H 0.22 tolerated(0.34) benign(0.305) TCGA-BR-4184-01 19 36634008 36634008 G A CAPNS1 Missense_Mutation p.R145H 0.23 deleterious(0.01) possibly_damaging(0.698) TCGA-BR-4184-01 19 36884211 36884211 C A ZFP82 Missense_Mutation p.G344V 0.23 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 19 37118277 37118277 G A ZNF382 Missense_Mutation p.G493E 0.20 tolerated(1) possibly_damaging(0.821) TCGA-BR-4184-01 19 37316578 37316578 G A ZNF790 5'UTR 0.19 TCGA-BR-4184-01 19 37643373 37643373 G A ZNF585A Silent p.T421T 0.23 TCGA-BR-4184-01 19 37966838 37966838 G A ZNF570 Missense_Mutation p.C30Y 0.27 tolerated(0.06) benign(0.004) TCGA-BR-4184-01 19 38590640 38590640 G A SIPA1L3 Silent p.T568T 0.24 TCGA-BR-4184-01 19 38600928 38600928 C T SIPA1L3 Missense_Mutation p.A732V 0.28 deleterious(0) probably_damaging(0.985) TCGA-BR-4184-01 19 38799966 38799966 G A YIF1B Silent p.I100I 0.12 TCGA-BR-4184-01 19 38910889 38910889 G A RASGRP4 Nonsense_Mutation p.R131* 0.36 TCGA-BR-4184-01 19 38945909 38945909 G A RYR1 Missense_Mutation p.R492H 0.14 possibly_damaging(0.849) TCGA-BR-4184-01 19 38958369 38958369 C T RYR1 Missense_Mutation p.R1100C 0.29 probably_damaging(0.984) TCGA-BR-4184-01 19 38976521 38976521 C T RYR1 Silent p.R1742R 0.20 TCGA-BR-4184-01 19 39052042 39052042 G A RYR1 Missense_Mutation p.R4191H 0.20 benign(0.003) TCGA-BR-4184-01 19 3907775 3907775 C T ATCAY Silent p.S134S 0.26 TCGA-BR-4184-01 19 39104547 39104547 C T MAP4K1 Missense_Mutation p.R169H 0.29 deleterious(0) probably_damaging(0.939) TCGA-BR-4184-01 19 39229238 39229238 C T CAPN12 Silent p.A260A 0.18 TCGA-BR-4184-01 19 39516156 39516156 G A FBXO27 Silent p.R249R 0.29 TCGA-BR-4184-01 19 39590899 39590899 G A PAPL Missense_Mutation p.A180T 0.30 deleterious(0) probably_damaging(0.932) TCGA-BR-4184-01 19 39871413 39871413 C T SAMD4B Silent p.G612G 0.30 TCGA-BR-4184-01 19 39949669 39949669 C T SUPT5H Silent p.G138G 0.25 TCGA-BR-4184-01 19 40486604 40486604 A G PSMC4 Missense_Mutation p.I375V 0.09 deleterious(0.03) possibly_damaging(0.725) TCGA-BR-4184-01 19 40541185 40541185 C T ZNF780B Silent p.K527K 0.10 TCGA-BR-4184-01 19 40747910 40747910 G A AKT2 Missense_Mutation p.R170W 0.38 deleterious(0) probably_damaging(0.946) TCGA-BR-4184-01 19 40889788 40889788 C T HIPK4 Missense_Mutation p.A242T 0.14 deleterious(0) possibly_damaging(0.873) TCGA-BR-4184-01 19 40895719 40895719 G A HIPK4 Missense_Mutation p.R31W 0.27 deleterious(0.02) benign(0.212) TCGA-BR-4184-01 19 41066425 41066425 C T SPTBN4 Intron 0.32 TCGA-BR-4184-01 19 41744377 41744377 C T AXL Missense_Mutation p.P333S 0.09 deleterious(0) possibly_damaging(0.721) TCGA-BR-4184-01 19 41810156 41810156 G A HNRNPUL1 Missense_Mutation p.S751N 0.33 tolerated_low_confidence(0.32) benign(0.213) TCGA-BR-4184-01 19 41863924 41863924 G A B9D2 Missense_Mutation p.A31V 0.09 deleterious(0.03) benign(0.108) TCGA-BR-4184-01 19 41884222 41884222 G A TMEM91 Missense_Mutation p.S3N 0.12 tolerated_low_confidence(0.42) benign(0.003) TCGA-BR-4184-01 19 41916541 41916541 G A BCKDHA Splice_Site p.X37_splice 0.36 TCGA-BR-4184-01 19 42259553 42259553 C - CEACAM6 Frame_Shift_Del p.S5Qfs*21 0.11 TCGA-BR-4184-01 19 42314895 42314895 C - CEACAM3 Frame_Shift_Del p.L220Yfs*15 0.24 TCGA-BR-4184-01 19 42383170 42383170 G A CD79A Missense_Mutation p.V64I 0.09 tolerated(0.27) benign(0.22) TCGA-BR-4184-01 19 42409386 42409386 G A ARHGEF1 Missense_Mutation p.R785H 0.37 tolerated(0.13) probably_damaging(0.999) TCGA-BR-4184-01 19 42584239 42584239 G A ZNF574 Missense_Mutation p.R494H 0.24 deleterious(0.01) benign(0.317) TCGA-BR-4184-01 19 42729380 42729380 C T ZNF526 Silent p.C275C 0.50 TCGA-BR-4184-01 19 42753169 42753169 C T ERF Silent p.S365S 0.23 TCGA-BR-4184-01 19 42797777 42797777 C T CIC Missense_Mutation p.R1277C 0.33 probably_damaging(0.973) TCGA-BR-4184-01 19 42814738 42814738 C T PRR19 Missense_Mutation p.P306L 0.33 deleterious_low_confidence(0.04) benign(0.027) TCGA-BR-4184-01 19 43343914 43343914 C T PSG10P 3'Flank 0.06 TCGA-BR-4184-01 19 44056177 44056177 C T XRCC1 Silent p.T358T 0.17 TCGA-BR-4184-01 19 4409428 4409428 C T CHAF1A Missense_Mutation p.T211M 0.25 tolerated_low_confidence(0.14) unknown(0) TCGA-BR-4184-01 19 4445439 4445439 G T UBXN6 3'UTR 0.34 TCGA-BR-4184-01 19 44513032 44513032 G A ZNF230 Missense_Mutation p.V36M 0.28 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 19 44661004 44661004 C T ZNF234 Nonsense_Mutation p.Q279* 0.09 TCGA-BR-4184-01 19 44778756 44778756 A G ZNF233 Missense_Mutation p.Y648C 0.16 deleterious(0) benign(0.082) TCGA-BR-4184-01 19 44981225 44981225 T - ZNF180 Frame_Shift_Del p.K491Nfs*154 0.19 TCGA-BR-4184-01 19 45284250 45284250 A C CBLC Missense_Mutation p.M148L 0.21 tolerated(0.24) benign(0.001) TCGA-BR-4184-01 19 45316510 45316510 G A BCAM Missense_Mutation p.A170T 0.27 deleterious(0.01) possibly_damaging(0.887) TCGA-BR-4184-01 19 45406321 45406321 G A TOMM40 Silent p.T327T 0.12 TCGA-BR-4184-01 19 45810786 45810786 C T CKM Silent p.A300A 0.22 TCGA-BR-4184-01 19 45911872 45911872 A - CD3EAP Frame_Shift_Del p.N218Ifs*4 0.10 TCGA-BR-4184-01 19 46287477 46287478 - G DMWD 3'UTR 0.27 TCGA-BR-4184-01 19 47225261 47225261 C T STRN4 Missense_Mutation p.A699T 0.25 tolerated(0.14) benign(0.035) TCGA-BR-4184-01 19 47423942 47423942 G A ARHGAP35 Silent p.S670S 0.17 TCGA-BR-4184-01 19 47823356 47823356 G A C5AR1 Missense_Mutation p.A108T 0.21 tolerated(0.14) possibly_damaging(0.902) TCGA-BR-4184-01 19 47876049 47876049 G A DHX34 Missense_Mutation p.A611T 0.33 tolerated(0.05) probably_damaging(0.992) TCGA-BR-4184-01 19 47884536 47884536 G A DHX34 Missense_Mutation p.A1085T 0.34 tolerated(0.6) benign(0.006) TCGA-BR-4184-01 19 4792951 4792951 C T FEM1A Missense_Mutation p.A362V 0.28 deleterious(0.04) probably_damaging(0.913) TCGA-BR-4184-01 19 47995277 47995277 C T NAPA Missense_Mutation p.A221T 0.20 tolerated(0.14) benign(0.027) TCGA-BR-4184-01 19 4816588 4816588 G A TICAM1 Missense_Mutation p.A601V 0.11 tolerated(0.63) benign(0.002) TCGA-BR-4184-01 19 4818028 4818028 G A TICAM1 Missense_Mutation p.A121V 0.26 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 19 48790081 48790081 G A ZNF114 Silent p.S400S 0.27 TCGA-BR-4184-01 19 48887702 48887702 G A KDELR1 Missense_Mutation p.A130V 0.23 deleterious(0) probably_damaging(0.992) TCGA-BR-4184-01 19 49227759 49227759 G A RASIP1 Silent p.G793G 0.33 TCGA-BR-4184-01 19 49442881 49442881 G A DHDH Missense_Mutation p.C181Y 0.30 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 19 49575644 49575644 C T KCNA7 Missense_Mutation p.A67T 0.33 deleterious(0) possibly_damaging(0.552) TCGA-BR-4184-01 19 49842133 49842133 G A CD37 Silent p.A208A 0.09 TCGA-BR-4184-01 19 49846621 49846621 G A TEAD2 Missense_Mutation p.A319V 0.11 tolerated(0.27) benign(0) TCGA-BR-4184-01 19 50040306 50040306 C T RCN3 Silent p.D154D 0.25 TCGA-BR-4184-01 19 50314650 50314650 G A FUZ Silent p.C154C 0.24 TCGA-BR-4184-01 19 50393017 50393017 C T IL4I1 Silent p.S560S 0.35 TCGA-BR-4184-01 19 5041189 5041189 G A KDM4B Missense_Mutation p.R120H 0.10 possibly_damaging(0.864) TCGA-BR-4184-01 19 50655902 50655902 A G IZUMO2 Silent p.C210C 0.24 TCGA-BR-4184-01 19 51009492 51009492 C T JOSD2 Missense_Mutation p.E169K 0.26 deleterious(0.03) benign(0.025) TCGA-BR-4184-01 19 51021314 51021314 C T LRRC4B Silent p.A552A 0.28 TCGA-BR-4184-01 19 51920664 51920664 C T SIGLEC10 Silent p.V31V 0.22 TCGA-BR-4184-01 19 5206828 5206828 G A PTPRS Missense_Mutation p.A1935V 0.22 deleterious(0) possibly_damaging(0.721) TCGA-BR-4184-01 19 5244179 5244179 C A PTPRS Missense_Mutation p.A435S 0.30 deleterious(0.01) possibly_damaging(0.734) TCGA-BR-4184-01 19 52468080 52468080 T - ZNF350 3'UTR 0.23 TCGA-BR-4184-01 19 52477672 52477672 G A ZNF350 5'UTR 0.15 TCGA-BR-4184-01 19 52496650 52496650 C T ZNF615 Missense_Mutation p.R571H 0.08 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 19 52519532 52519532 C T ZNF614 Missense_Mutation p.R440H 0.33 tolerated(0.22) benign(0.002) TCGA-BR-4184-01 19 52619372 52619372 C A ZNF616 Nonsense_Mutation p.G349* 0.37 TCGA-BR-4184-01 19 52714620 52714620 G A PPP2R1A Silent p.A126A 0.31 TCGA-BR-4184-01 19 52825210 52825210 G A ZNF480 Missense_Mutation p.C236Y 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-BR-4184-01 19 52825228 52825228 G A ZNF480 Missense_Mutation p.R242H 0.28 tolerated(0.16) benign(0.005) TCGA-BR-4184-01 19 52919279 52919279 C T ZNF528 Missense_Mutation p.R392C 0.26 tolerated(0.2) possibly_damaging(0.845) TCGA-BR-4184-01 19 53086002 53086002 A - ZNF701 Frame_Shift_Del p.K298Nfs*4 0.28 TCGA-BR-4184-01 19 53087416 53087416 A G ZNF701 3'UTR 0.25 TCGA-BR-4184-01 19 53208665 53208665 G A ZNF611 Missense_Mutation p.A548V 0.09 tolerated(0.17) benign(0.007) TCGA-BR-4184-01 19 53848784 53848784 C T ZNF845 Missense_Mutation p.A14V 0.21 deleterious(0.03) probably_damaging(0.989) TCGA-BR-4184-01 19 54080668 54080668 G A ZNF331 Missense_Mutation p.S285N 0.27 tolerated(0.23) probably_damaging(0.992) TCGA-BR-4184-01 19 54376938 54376938 C T MYADM Missense_Mutation p.S52L 0.21 deleterious(0.04) possibly_damaging(0.597) TCGA-BR-4184-01 19 54377441 54377441 G A MYADM Missense_Mutation p.A220T 0.13 tolerated(0.42) benign(0.131) TCGA-BR-4184-01 19 54618073 54618073 C T TFPT Missense_Mutation p.A11T 0.22 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BR-4184-01 19 54667393 54667393 G A TMC4 Intron 0.37 TCGA-BR-4184-01 19 54669181 54669181 C T TMC4 Missense_Mutation p.R312H 0.35 deleterious(0) probably_damaging(0.944) TCGA-BR-4184-01 19 54967409 54967409 G A LENG8 Missense_Mutation p.R430H 0.22 deleterious(0.02) benign(0.01) TCGA-BR-4184-01 19 55301513 55301513 G A CTB-61M7.1 RNA 0.20 TCGA-BR-4184-01 19 55568079 55568079 C T RDH13 Silent p.R94R 0.17 TCGA-BR-4184-01 19 55889054 55889054 G A TMEM190 Missense_Mutation p.R63H 0.29 deleterious(0.01) possibly_damaging(0.715) TCGA-BR-4184-01 19 56156449 56156449 G A ZNF581 Missense_Mutation p.R171H 0.28 deleterious(0) probably_damaging(0.994) TCGA-BR-4184-01 19 56369066 56369066 G A NLRP4 Missense_Mutation p.A103T 0.09 tolerated(0.18) benign(0.031) TCGA-BR-4184-01 19 56382267 56382267 G A NLRP4 Missense_Mutation p.R810H 0.18 tolerated(0.13) possibly_damaging(0.738) TCGA-BR-4184-01 19 56600116 56600116 C T ZNF787 Missense_Mutation p.R142H 0.24 deleterious(0) probably_damaging(0.998) TCGA-BR-4184-01 19 57081729 57081729 G A ZNF470 Missense_Mutation p.A17T 0.21 tolerated(0.1) benign(0.003) TCGA-BR-4184-01 19 57132721 57132721 G - ZNF71 Frame_Shift_Del p.G24Dfs*45 0.34 TCGA-BR-4184-01 19 57133474 57133474 C T ZNF71 Silent p.P273P 0.38 TCGA-BR-4184-01 19 57175802 57175802 G A ZNF835 Silent p.C255C 0.20 TCGA-BR-4184-01 19 57176545 57176545 C T ZNF835 Missense_Mutation p.A8T 0.20 tolerated(0.33) benign(0.022) TCGA-BR-4184-01 19 57327787 57327787 G A PEG3 Missense_Mutation p.R675C 0.28 deleterious(0.01) probably_damaging(0.915) TCGA-BR-4184-01 19 57646264 57646264 T - ZIM3 3'UTR 0.21 TCGA-BR-4184-01 19 57646555 57646555 T - ZIM3 Frame_Shift_Del p.I384Sfs*49 0.11 TCGA-BR-4184-01 19 57746858 57746858 T - AURKC 3'UTR 0.38 TCGA-BR-4184-01 19 57766087 57766087 C T ZNF805 3'Flank 0.34 TCGA-BR-4184-01 19 58018779 58018779 G A ZNF773 Missense_Mutation p.G439E 0.25 deleterious(0) possibly_damaging(0.852) TCGA-BR-4184-01 19 58059290 58059290 G A ZNF550 Missense_Mutation p.R67W 0.20 tolerated(0.06) possibly_damaging(0.556) TCGA-BR-4184-01 19 58084160 58084160 C T ZNF416 Missense_Mutation p.R371Q 0.09 tolerated(0.94) benign(0.086) TCGA-BR-4184-01 19 58199015 58199015 C T ZNF551 Nonsense_Mutation p.Q458* 0.16 TCGA-BR-4184-01 19 58350411 58350411 C T ZNF587B Silent p.D19D 0.15 TCGA-BR-4184-01 19 58352434 58352434 A G ZNF587B Missense_Mutation p.D131G 0.17 deleterious(0.04) probably_damaging(0.936) TCGA-BR-4184-01 19 58352696 58352696 T A ZNF587B Missense_Mutation p.D218E 0.18 tolerated(1) benign(0) TCGA-BR-4184-01 19 58385707 58385708 - T ZNF814 Frame_Shift_Ins p.H351Tfs*3 0.25 TCGA-BR-4184-01 19 58639657 58639657 C T ZNF329 Missense_Mutation p.G405D 0.16 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 19 58724308 58724308 C T ZNF274 Silent p.G586G 0.09 TCGA-BR-4184-01 19 6711033 6711033 C T C3 Missense_Mutation p.A482T 0.23 tolerated(0.48) benign(0.015) TCGA-BR-4184-01 19 6732509 6732509 C T GPR108 Missense_Mutation p.V329I 0.11 tolerated(0.44) benign(0.123) TCGA-BR-4184-01 19 6734195 6734195 G A GPR108 Silent p.G166G 0.13 TCGA-BR-4184-01 19 7076449 7076449 C T ZNF557 Silent p.L60L 0.10 TCGA-BR-4184-01 19 7141702 7141702 G A INSR Nonsense_Mutation p.R890* 0.20 TCGA-BR-4184-01 19 7170578 7170578 C T INSR Missense_Mutation p.A485T 0.32 tolerated(0.61) possibly_damaging(0.685) TCGA-BR-4184-01 19 7509198 7509198 G A ARHGEF18 Missense_Mutation p.R302H 0.24 tolerated(0.06) benign(0.117) TCGA-BR-4184-01 19 757730 757730 C T MISP Missense_Mutation p.R262C 0.32 tolerated(0.17) benign(0.01) TCGA-BR-4184-01 19 7614956 7614956 G A PNPLA6 Missense_Mutation p.R600H 0.14 tolerated(0.27) benign(0.027) TCGA-BR-4184-01 19 7687312 7687312 C T XAB2 Missense_Mutation p.D508N 0.22 tolerated(0.09) benign(0.013) TCGA-BR-4184-01 19 7703933 7703933 G A STXBP2 Missense_Mutation p.R39H 0.12 deleterious(0) probably_damaging(0.909) TCGA-BR-4184-01 19 7831687 7831687 G T CLEC4M Missense_Mutation p.E310D 0.17 deleterious(0.05) probably_damaging(0.941) TCGA-BR-4184-01 19 7975375 7975375 G A MAP2K7 Missense_Mutation p.R162H 0.43 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 19 8136980 8136980 G A FBN3 Silent p.G2680G 0.12 TCGA-BR-4184-01 19 814918 814918 G A LPPR3 Silent p.S189S 0.14 TCGA-BR-4184-01 19 8551958 8551958 C T HNRNPM Silent p.C676C 0.29 TCGA-BR-4184-01 19 8564477 8564477 G A PRAM1 Missense_Mutation p.P72L 0.14 tolerated(0.21) benign(0.004) TCGA-BR-4184-01 19 8595407 8595407 T C MYO1F Silent p.R698R 0.29 TCGA-BR-4184-01 19 8604860 8604860 G A MYO1F Missense_Mutation p.R555C 0.40 deleterious(0) probably_damaging(0.993) TCGA-BR-4184-01 19 8808718 8808718 G A ACTL9 Nonsense_Mutation p.Q112* 0.27 TCGA-BR-4184-01 19 8932718 8932718 G A ZNF558 Silent p.G27G 0.20 TCGA-BR-4184-01 19 9047264 9047264 G A MUC16 Missense_Mutation p.A11456V 0.24 benign(0.092) TCGA-BR-4184-01 19 9049103 9049103 A - MUC16 Frame_Shift_Del p.F10843Sfs*11 0.23 TCGA-BR-4184-01 19 9065788 9065788 C - MUC16 Frame_Shift_Del p.D7220Ifs*25 0.23 TCGA-BR-4184-01 19 9067419 9067419 G A MUC16 Missense_Mutation p.A6676V 0.11 unknown(0) TCGA-BR-4184-01 19 9070156 9070156 T G MUC16 Missense_Mutation p.T5764P 0.30 unknown(0) TCGA-BR-4184-01 19 9070335 9070335 G T MUC16 Missense_Mutation p.T5704N 0.25 unknown(0) TCGA-BR-4184-01 19 9075638 9075638 C T MUC16 Silent p.E3936E 0.15 TCGA-BR-4184-01 19 9297198 9297198 C A OR7D2 Silent p.V247V 0.22 TCGA-BR-4184-01 19 9577561 9577561 C T ZNF560 Missense_Mutation p.A688T 0.26 tolerated(0.52) benign(0) TCGA-BR-4184-01 19 9922250 9922250 G A FBXL12 Silent p.C101C 0.29 TCGA-BR-4184-01 1 100340251 100340251 C T AGL Nonsense_Mutation p.R323* 0.11 TCGA-BR-4184-01 1 100534034 100534034 A - HIAT1 Frame_Shift_Del p.V240Sfs*6 0.21 TCGA-BR-4184-01 1 100740462 100740462 C T RTCA Missense_Mutation p.R199C 0.11 deleterious(0.04) possibly_damaging(0.828) TCGA-BR-4184-01 1 101194751 101194751 C A VCAM1 Silent p.G339G 0.29 TCGA-BR-4184-01 1 10155571 10155571 G A UBE4B Silent p.S88S 0.32 TCGA-BR-4184-01 1 10197233 10197233 G A UBE4B Missense_Mutation p.R778H 0.08 deleterious(0) possibly_damaging(0.557) TCGA-BR-4184-01 1 10706370 10706370 C T CASZ1 Missense_Mutation p.A1171T 0.22 tolerated(0.11) possibly_damaging(0.556) TCGA-BR-4184-01 1 108766345 108766345 C T NBPF4 Silent p.T633T 0.23 TCGA-BR-4184-01 1 109154858 109154858 G A FAM102B Missense_Mutation p.R116H 0.28 tolerated(0.12) probably_damaging(0.95) TCGA-BR-4184-01 1 109811556 109811556 G A CELSR2 Missense_Mutation p.R2186H 0.23 tolerated(0.13) benign(0.048) TCGA-BR-4184-01 1 109840068 109840068 C T MYBPHL Missense_Mutation p.A136T 0.23 deleterious(0.02) benign(0.346) TCGA-BR-4184-01 1 110172028 110172028 C T AMPD2 Missense_Mutation p.A647V 0.27 tolerated(0.3) benign(0.012) TCGA-BR-4184-01 1 110603359 110603359 G A ALX3 Missense_Mutation p.T343M 0.25 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 1 110884009 110884009 G A RBM15 Missense_Mutation p.R661H 0.21 tolerated(0.08) possibly_damaging(0.542) TCGA-BR-4184-01 1 111215658 111215658 C T KCNA3 3'UTR 0.18 TCGA-BR-4184-01 1 111216253 111216253 C T KCNA3 Silent p.A393A 0.08 TCGA-BR-4184-01 1 111495126 111495126 T A LRIF1 Missense_Mutation p.N127I 0.22 tolerated(0.45) probably_damaging(0.955) TCGA-BR-4184-01 1 111969183 111969183 G A OVGP1 Silent p.L46L 0.27 TCGA-BR-4184-01 1 112524688 112524688 G A KCND3 Missense_Mutation p.R221C 0.42 deleterious(0) benign(0.032) TCGA-BR-4184-01 1 11253813 11253813 G A ANGPTL7 Silent p.R218R 0.29 TCGA-BR-4184-01 1 11308151 11308151 G A MTOR Missense_Mutation p.R281C 0.18 deleterious(0) possibly_damaging(0.791) TCGA-BR-4184-01 1 113189836 113189836 G A CAPZA1 Missense_Mutation p.R15H 0.15 deleterious(0.03) benign(0.019) TCGA-BR-4184-01 1 114499899 114499899 G A HIPK1 Silent p.V582V 0.30 TCGA-BR-4184-01 1 11562098 11562098 G A PTCHD2 Missense_Mutation p.G350D 0.39 deleterious(0.01) probably_damaging(1) TCGA-BR-4184-01 1 11574496 11574496 C T PTCHD2 Missense_Mutation p.R456C 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-BR-4184-01 1 115828756 115828756 G A NGF Missense_Mutation p.R221W 0.22 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 1 11596418 11596418 C T PTCHD2 Missense_Mutation p.A1285V 0.36 deleterious(0) probably_damaging(0.998) TCGA-BR-4184-01 1 117150721 117150721 G A IGSF3 Silent p.S355S 0.08 TCGA-BR-4184-01 1 117156493 117156493 G A IGSF3 Silent p.G242G 0.25 TCGA-BR-4184-01 1 117156666 117156666 G T IGSF3 Silent p.R185R 0.26 TCGA-BR-4184-01 1 117556343 117556343 G A CD101 Missense_Mutation p.R386H 0.31 tolerated(0.13) benign(0) TCGA-BR-4184-01 1 118634571 118634571 G A SPAG17 Missense_Mutation p.P410S 0.21 tolerated(0.24) benign(0.02) TCGA-BR-4184-01 1 11907202 11907202 C T NPPA Missense_Mutation p.A140T 0.23 tolerated(0.09) benign(0.39) TCGA-BR-4184-01 1 119965056 119965056 A G HSD3B2 Missense_Mutation p.Q311R 0.10 tolerated(0.56) benign(0) TCGA-BR-4184-01 1 12024350 12024350 C T PLOD1 Missense_Mutation p.R441W 0.26 deleterious(0) possibly_damaging(0.489) TCGA-BR-4184-01 1 120462077 120462077 G A NOTCH2 Missense_Mutation p.A1880V 0.12 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 1 120483245 120483245 G A NOTCH2 Missense_Mutation p.T1039M 0.21 deleterious(0.02) benign(0.107) TCGA-BR-4184-01 1 12387789 12387789 G A VPS13D Missense_Mutation p.S2692N 0.27 benign(0) TCGA-BR-4184-01 1 12640620 12640620 G A DHRS3 Silent p.C90C 0.18 TCGA-BR-4184-01 1 12836065 12836065 G A PRAMEF12 Missense_Mutation p.A223T 0.26 tolerated(0.12) probably_damaging(0.982) TCGA-BR-4184-01 1 12884930 12884930 A C PRAMEF11 Missense_Mutation p.I394S 0.07 deleterious(0) benign(0.164) TCGA-BR-4184-01 1 12907861 12907861 G A HNRNPCL1 Silent p.N94N 0.12 TCGA-BR-4184-01 1 13669154 13669154 A G PRAMEF14 Silent p.G392G 0.11 TCGA-BR-4184-01 1 13742962 13742962 G A PRAMEF20 Missense_Mutation p.A51T 0.22 tolerated(1) benign(0.047) TCGA-BR-4184-01 1 1397993 1397993 G A ATAD3C Missense_Mutation p.A332T 0.19 deleterious(0.03) benign(0.206) TCGA-BR-4184-01 1 14105372 14105372 C T PRDM2 Missense_Mutation p.P361L 0.28 probably_damaging(1) TCGA-BR-4184-01 1 14105506 14105506 C T PRDM2 Missense_Mutation p.R406W 0.22 probably_damaging(1) TCGA-BR-4184-01 1 142713336 142713336 C A RP11-417J8.6 RNA 0.31 TCGA-BR-4184-01 1 144053644 144053644 G A SRGAP2B RNA 0.09 TCGA-BR-4184-01 1 144917533 144917533 C T PDE4DIP Missense_Mutation p.R524H 0.12 tolerated(0.07) benign(0.289) TCGA-BR-4184-01 1 146680465 146680465 T - FMO5 Frame_Shift_Del p.K260Rfs*2 0.20 TCGA-BR-4184-01 1 146756152 146756152 T C CHD1L Missense_Mutation p.S612P 0.24 tolerated(0.17) benign(0.017) TCGA-BR-4184-01 1 148004608 148004608 A - NBPF14 Frame_Shift_Del p.F908Lfs*3 0.12 TCGA-BR-4184-01 1 149898418 149898418 G A SF3B4 Missense_Mutation p.R186C 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-BR-4184-01 1 149936124 149936124 C T OTUD7B Intron 0.24 TCGA-BR-4184-01 1 150305209 150305209 C A PRPF3 Missense_Mutation p.L160M 0.33 deleterious(0.03) probably_damaging(0.927) TCGA-BR-4184-01 1 150529443 150529443 T - ADAMTSL4 Frame_Shift_Del p.Y595Ifs*29 0.25 TCGA-BR-4184-01 1 150680815 150680815 C T HORMAD1 Missense_Mutation p.R155H 0.17 deleterious(0) possibly_damaging(0.805) TCGA-BR-4184-01 1 150680846 150680846 C T HORMAD1 Missense_Mutation p.D145N 0.22 tolerated(0.3) probably_damaging(0.99) TCGA-BR-4184-01 1 151076045 151076045 C T GABPB2 Silent p.P210P 0.15 TCGA-BR-4184-01 1 151276023 151276023 T C PI4KB Missense_Mutation p.D517G 0.22 deleterious(0.04) probably_damaging(0.923) TCGA-BR-4184-01 1 151378465 151378465 C - POGZ Frame_Shift_Del p.E1016Rfs*3 0.12 TCGA-BR-4184-01 1 151496719 151496719 G A CGN Missense_Mutation p.R429H 0.46 tolerated(0.19) benign(0.265) TCGA-BR-4184-01 1 151680282 151680282 C T CELF3 Missense_Mutation p.A206T 0.25 tolerated(0.09) possibly_damaging(0.892) TCGA-BR-4184-01 1 151747603 151747603 C T TDRKH Missense_Mutation p.A492T 0.18 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 1 151774033 151774033 G - LINGO4 Frame_Shift_Del p.P383Lfs*14 0.20 TCGA-BR-4184-01 1 151955589 151955589 G A S100A10 3'UTR 0.07 TCGA-BR-4184-01 1 152082230 152082230 T G TCHH Silent p.R1155R 0.23 TCGA-BR-4184-01 1 152085491 152085491 G A TCHH Missense_Mutation p.R68C 0.31 unknown(0) TCGA-BR-4184-01 1 152325581 152325581 T C FLG2 Missense_Mutation p.T1561A 0.09 benign(0.148) TCGA-BR-4184-01 1 152944506 152944506 C A SPRR4 Missense_Mutation p.A47D 0.08 deleterious_low_confidence(0.01) unknown(0) TCGA-BR-4184-01 1 154125256 154125256 G A NUP210L Missense_Mutation p.T99M 0.08 deleterious(0) possibly_damaging(0.684) TCGA-BR-4184-01 1 154145414 154145414 C T TPM3 Missense_Mutation p.R179H 0.17 deleterious(0.03) benign(0.195) TCGA-BR-4184-01 1 154493838 154493838 A C TDRD10 Silent p.T84T 0.26 TCGA-BR-4184-01 1 154523896 154523896 G A UBE2Q1 Nonsense_Mutation p.R383* 0.30 TCGA-BR-4184-01 1 154574691 154574691 T A ADAR Missense_Mutation p.I143F 0.22 deleterious(0) possibly_damaging(0.826) TCGA-BR-4184-01 1 154698441 154698441 G A KCNN3 Missense_Mutation p.A551V 0.25 deleterious(0.02) benign(0.014) TCGA-BR-4184-01 1 154919108 154919108 C T PBXIP1 Missense_Mutation p.G348S 0.25 deleterious(0.03) possibly_damaging(0.453) TCGA-BR-4184-01 1 154938054 154938054 G A SHC1 Missense_Mutation p.P531S 0.09 tolerated(0.14) benign(0.08) TCGA-BR-4184-01 1 154999075 154999075 G A DCST2 Missense_Mutation p.R487C 0.07 deleterious(0) probably_damaging(0.959) TCGA-BR-4184-01 1 155014205 155014205 C T DCST1 Missense_Mutation p.A255V 0.26 deleterious(0.01) possibly_damaging(0.71) TCGA-BR-4184-01 1 156105054 156105054 G A LMNA Missense_Mutation p.R296H 0.35 tolerated(0.07) benign(0.052) TCGA-BR-4184-01 1 156106043 156106043 G A LMNA Missense_Mutation p.R399H 0.41 tolerated(0.15) benign(0) TCGA-BR-4184-01 1 15817735 15817735 G A CASP9 3'Flank 0.14 TCGA-BR-4184-01 1 158298045 158298045 G A CD1B Missense_Mutation p.S328L 0.38 tolerated(0.06) possibly_damaging(0.78) TCGA-BR-4184-01 1 158298046 158298046 A T CD1B Missense_Mutation p.S328T 0.39 tolerated(0.14) possibly_damaging(0.873) TCGA-BR-4184-01 1 158724726 158724726 C A OR6K6 Missense_Mutation p.L41I 0.09 tolerated(1) benign(0.004) TCGA-BR-4184-01 1 158725344 158725344 C T OR6K6 Missense_Mutation p.R247W 0.18 deleterious(0.02) probably_damaging(0.932) TCGA-BR-4184-01 1 158735692 158735692 G A OR6N1 Nonsense_Mutation p.Q261* 0.10 TCGA-BR-4184-01 1 158813117 158813117 A G MNDA Missense_Mutation p.N105S 0.21 tolerated(0.19) benign(0.041) TCGA-BR-4184-01 1 159804932 159804932 C T C1orf204 3'UTR 0.26 TCGA-BR-4184-01 1 159850438 159850438 C T CCDC19 Missense_Mutation p.R317H 0.21 tolerated(0.11) benign(0.066) TCGA-BR-4184-01 1 159907504 159907504 G A IGSF9 Silent p.N124N 0.18 TCGA-BR-4184-01 1 160011659 160011659 G T KCNJ10 Missense_Mutation p.Q222K 0.37 deleterious(0.01) benign(0.007) TCGA-BR-4184-01 1 160062178 160062178 G A IGSF8 Silent p.G540G 0.18 TCGA-BR-4184-01 1 160151577 160151577 G A ATP1A4 Missense_Mutation p.R947H 0.23 deleterious(0.01) benign(0.058) TCGA-BR-4184-01 1 160261166 160261166 G A COPA Missense_Mutation p.R1136C 0.25 deleterious(0) probably_damaging(0.996) TCGA-BR-4184-01 1 161022260 161022260 G A ARHGAP30 Missense_Mutation p.R304C 0.30 deleterious(0) probably_damaging(0.991) TCGA-BR-4184-01 1 161039355 161039355 G A ARHGAP30 Silent p.C20C 0.24 TCGA-BR-4184-01 1 161094125 161094125 C T DEDD Missense_Mutation p.R43H 0.10 deleterious(0.04) probably_damaging(0.997) TCGA-BR-4184-01 1 161130563 161130563 C T USP21 Missense_Mutation p.P45S 0.27 tolerated_low_confidence(0.16) benign(0.018) TCGA-BR-4184-01 1 161180180 161180180 G T NDUFS2 Splice_Site p.X289_splice 0.08 TCGA-BR-4184-01 1 161277190 161277190 A G MPZ Missense_Mutation p.V31A 0.26 tolerated(0.67) benign(0.071) TCGA-BR-4184-01 1 161495324 161495324 C T HSPA6 Silent p.G292G 0.28 TCGA-BR-4184-01 1 161599810 161599810 G A FCGR3B Missense_Mutation p.A62V 0.30 deleterious(0) probably_damaging(0.992) TCGA-BR-4184-01 1 161967927 161967927 G A OLFML2B Missense_Mutation p.H388Y 0.27 tolerated(0.15) benign(0.001) TCGA-BR-4184-01 1 162473601 162473601 G A UHMK1 Missense_Mutation p.A271T 0.32 tolerated(0.4) benign(0.297) TCGA-BR-4184-01 1 16257770 16257770 G A SPEN Missense_Mutation p.V1679I 0.29 benign(0.003) TCGA-BR-4184-01 1 16272720 16272720 C T ZBTB17 Missense_Mutation p.R155H 0.27 tolerated_low_confidence(0.09) benign(0.026) TCGA-BR-4184-01 1 164769123 164769123 C T PBX1 Missense_Mutation p.A233V 0.19 deleterious(0.02) possibly_damaging(0.51) TCGA-BR-4184-01 1 165322399 165322399 G A LMX1A Silent p.C59C 0.29 TCGA-BR-4184-01 1 167096298 167096298 G A DUSP27 Missense_Mutation p.A644T 0.23 deleterious(0.04) benign(0) TCGA-BR-4184-01 1 167385075 167385075 C A POU2F1 3'UTR 0.28 TCGA-BR-4184-01 1 167400950 167400950 C T CD247 Missense_Mutation p.A155T 0.26 deleterious(0) probably_damaging(0.951) TCGA-BR-4184-01 1 168065850 168065850 C T GPR161 Missense_Mutation p.R352H 0.13 deleterious(0) probably_damaging(0.998) TCGA-BR-4184-01 1 1693452 1693452 G A NADK Missense_Mutation p.P68S 0.12 deleterious_low_confidence(0) possibly_damaging(0.857) TCGA-BR-4184-01 1 169697058 169697058 G A SELE Silent p.C430C 0.09 TCGA-BR-4184-01 1 169821818 169821818 C T SCYL3 3'UTR 0.25 TCGA-BR-4184-01 1 171178010 171178010 C T FMO2 Missense_Mutation p.A445V 0.10 tolerated(1) benign(0.038) TCGA-BR-4184-01 1 171252297 171252297 C T FMO1 Missense_Mutation p.P400S 0.06 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 1 173019955 173019955 G A TNFSF18 Missense_Mutation p.L50F 0.27 tolerated(0.16) benign(0.071) TCGA-BR-4184-01 1 17314944 17314944 C T ATP13A2 Missense_Mutation p.G879S 0.23 deleterious(0.01) probably_damaging(1) TCGA-BR-4184-01 1 17413176 17413176 C T PADI2 Missense_Mutation p.R225H 0.11 tolerated(0.2) benign(0.051) TCGA-BR-4184-01 1 174417499 174417499 G A GPR52 Missense_Mutation p.A84T 0.22 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 1 174987651 174987651 C T MRPS14 Missense_Mutation p.R36H 0.15 deleterious(0) probably_damaging(0.97) TCGA-BR-4184-01 1 175046767 175046767 G A TNN Silent p.S71S 0.19 TCGA-BR-4184-01 1 176564697 176564697 C T PAPPA2 Missense_Mutation p.R653C 0.08 tolerated(0.19) possibly_damaging(0.634) TCGA-BR-4184-01 1 176833575 176833575 G A ASTN1 Missense_Mutation p.R1244W 0.28 deleterious_low_confidence(0) possibly_damaging(0.606) TCGA-BR-4184-01 1 17743117 17743117 G A RCC2 Silent p.I295I 0.09 TCGA-BR-4184-01 1 178855202 178855202 C T RALGPS2 Missense_Mutation p.A380V 0.29 tolerated(0.06) benign(0.001) TCGA-BR-4184-01 1 179077318 179077318 G A ABL2 Silent p.G1028G 0.27 TCGA-BR-4184-01 1 179078138 179078138 C T ABL2 Missense_Mutation p.R755H 0.20 tolerated_low_confidence(0.65) probably_damaging(0.998) TCGA-BR-4184-01 1 179414261 179414261 C T AXDND1 Nonsense_Mutation p.R574* 0.09 TCGA-BR-4184-01 1 179620046 179620046 C T TDRD5 Silent p.C615C 0.21 TCGA-BR-4184-01 1 180010286 180010286 G A CEP350 Missense_Mutation p.R1375H 0.27 possibly_damaging(0.628) TCGA-BR-4184-01 1 180780557 180780557 G T XPR1 Missense_Mutation p.W232C 0.32 deleterious(0) probably_damaging(0.971) TCGA-BR-4184-01 1 180849411 180849411 C T XPR1 Missense_Mutation p.R670C 0.24 deleterious(0) possibly_damaging(0.677) TCGA-BR-4184-01 1 180974435 180974435 G A STX6 Missense_Mutation p.T67I 0.06 deleterious(0) benign(0.082) TCGA-BR-4184-01 1 181706782 181706782 C T CACNA1E Missense_Mutation p.R1182C 0.17 deleterious(0) probably_damaging(0.919) TCGA-BR-4184-01 1 181732597 181732597 G A CACNA1E Missense_Mutation p.R1582H 0.29 deleterious(0) possibly_damaging(0.812) TCGA-BR-4184-01 1 182550411 182550411 C T RNASEL Silent p.L618L 0.25 TCGA-BR-4184-01 1 182872293 182872293 C T SHCBP1L Missense_Mutation p.A531T 0.25 deleterious(0.03) probably_damaging(0.999) TCGA-BR-4184-01 1 182873320 182873320 C T SHCBP1L Missense_Mutation p.A528T 0.09 deleterious(0.02) benign(0.441) TCGA-BR-4184-01 1 183105532 183105532 C T LAMC1 Missense_Mutation p.R1376C 0.24 deleterious(0.03) probably_damaging(0.912) TCGA-BR-4184-01 1 184671996 184671996 G A EDEM3 Missense_Mutation p.R780W 0.22 deleterious(0) possibly_damaging(0.462) TCGA-BR-4184-01 1 184692925 184692925 G A EDEM3 Silent p.G271G 0.26 TCGA-BR-4184-01 1 184764913 184764913 T C FAM129A Missense_Mutation p.D662G 0.20 tolerated(0.38) benign(0.002) TCGA-BR-4184-01 1 184777283 184777283 C T FAM129A Silent p.L420L 0.25 TCGA-BR-4184-01 1 185112528 185112528 G A TRMT1L Nonsense_Mutation p.R274* 0.10 TCGA-BR-4184-01 1 185985117 185985117 C T HMCN1 Missense_Mutation p.A1646V 0.19 benign(0.217) TCGA-BR-4184-01 1 186092202 186092202 C T HMCN1 Missense_Mutation p.R4117C 0.23 possibly_damaging(0.606) TCGA-BR-4184-01 1 186147696 186147696 C T HMCN1 Silent p.G5364G 0.12 TCGA-BR-4184-01 1 186147722 186147722 C T HMCN1 Missense_Mutation p.A5373V 0.21 possibly_damaging(0.857) TCGA-BR-4184-01 1 186158913 186158913 G A HMCN1 Missense_Mutation p.R5604H 0.18 probably_damaging(0.976) TCGA-BR-4184-01 1 186647441 186647441 C A PTGS2 Missense_Mutation p.A137S 0.09 tolerated(0.54) benign(0.042) TCGA-BR-4184-01 1 18808238 18808238 G A KLHDC7A Missense_Mutation p.A255T 0.35 tolerated(0.29) benign(0.018) TCGA-BR-4184-01 1 19199402 19199402 C T ALDH4A1 Silent p.S543S 0.08 TCGA-BR-4184-01 1 192544902 192544902 C T RGS1 5'UTR 0.20 TCGA-BR-4184-01 1 193149563 193149563 C T B3GALT2 Missense_Mutation p.S377N 0.08 tolerated(0.65) benign(0.047) TCGA-BR-4184-01 1 193149774 193149774 G A B3GALT2 Missense_Mutation p.R307C 0.15 deleterious(0) probably_damaging(0.967) TCGA-BR-4184-01 1 19468163 19468163 T C UBR4 Missense_Mutation p.D2763G 0.16 possibly_damaging(0.644) TCGA-BR-4184-01 1 19478277 19478277 G A UBR4 Missense_Mutation p.T2358I 0.33 possibly_damaging(0.475) TCGA-BR-4184-01 1 19524463 19524463 G A UBR4 Silent p.N243N 0.15 TCGA-BR-4184-01 1 196801062 196801062 G A CFHR1 Missense_Mutation p.R309H 0.09 tolerated(0.12) possibly_damaging(0.725) TCGA-BR-4184-01 1 197390881 197390881 C A CRB1 Silent p.G641G 0.09 TCGA-BR-4184-01 1 197704823 197704823 C T DENND1B Intron 0.19 TCGA-BR-4184-01 1 197889133 197889133 C T LHX9 Missense_Mutation p.A69V 0.36 tolerated(0.23) benign(0.018) TCGA-BR-4184-01 1 198685904 198685904 A C PTPRC Missense_Mutation p.Y462S 0.10 tolerated(0.14) benign(0.055) TCGA-BR-4184-01 1 198687371 198687371 G A PTPRC Silent p.S533S 0.37 TCGA-BR-4184-01 1 200635844 200635844 T - DDX59 Frame_Shift_Del p.I9Sfs*16 0.22 TCGA-BR-4184-01 1 200827020 200827020 A - CAMSAP2 Frame_Shift_Del p.M1426* 0.19 TCGA-BR-4184-01 1 200944027 200944027 C T KIF21B Silent p.A1543A 0.24 TCGA-BR-4184-01 1 201022696 201022696 C T CACNA1S Missense_Mutation p.R1229H 0.22 deleterious(0.01) probably_damaging(0.977) TCGA-BR-4184-01 1 201252935 201252935 G A PKP1 Silent p.T35T 0.23 TCGA-BR-4184-01 1 201751650 201751650 C T NAV1 Silent p.Y670Y 0.20 TCGA-BR-4184-01 1 202128662 202128662 G A PTPN7 Intron 0.20 TCGA-BR-4184-01 1 202270002 202270002 G A LGR6 Missense_Mutation p.A271T 0.27 tolerated(0.11) benign(0.034) TCGA-BR-4184-01 1 202418206 202418206 G A PPP1R12B Missense_Mutation p.R586H 0.08 deleterious(0.04) probably_damaging(0.914) TCGA-BR-4184-01 1 202573729 202573729 C T SYT2 Missense_Mutation p.A67T 0.28 tolerated(0.28) possibly_damaging(0.499) TCGA-BR-4184-01 1 202704712 202704712 G A KDM5B Silent p.L1090L 0.31 TCGA-BR-4184-01 1 202746175 202746175 C T KDM5B Silent p.T84T 0.19 TCGA-BR-4184-01 1 202842641 202842641 G A RP11-480I12.7 RNA 0.08 TCGA-BR-4184-01 1 202863757 202863757 G A KLHL12 Missense_Mutation p.A419V 0.07 tolerated(1) possibly_damaging(0.89) TCGA-BR-4184-01 1 202920110 202920110 A G ADIPOR1 Missense_Mutation p.L30P 0.20 deleterious(0.01) probably_damaging(0.915) TCGA-BR-4184-01 1 203134421 203134421 C T ADORA1 Missense_Mutation p.A125V 0.38 tolerated(0.49) benign(0) TCGA-BR-4184-01 1 205632060 205632060 T C SLC45A3 Missense_Mutation p.T287A 0.09 tolerated(0.1) possibly_damaging(0.457) TCGA-BR-4184-01 1 205814498 205814498 G A PM20D1 Silent p.G148G 0.25 TCGA-BR-4184-01 1 206626563 206626563 G A SRGAP2 Missense_Mutation p.A647T 0.20 deleterious(0) probably_damaging(0.925) TCGA-BR-4184-01 1 208061099 208061099 G A CD34 Missense_Mutation p.A381V 0.23 deleterious(0) probably_damaging(0.992) TCGA-BR-4184-01 1 208212226 208212226 G A PLXNA2 Missense_Mutation p.A1535V 0.26 deleterious(0.01) benign(0.001) TCGA-BR-4184-01 1 20827511 20827511 G A MUL1 Missense_Mutation p.A244V 0.19 tolerated(0.15) benign(0.006) TCGA-BR-4184-01 1 208391279 208391279 C T PLXNA2 5'UTR 0.33 TCGA-BR-4184-01 1 210415831 210415831 C T SERTAD4 3'UTR 0.27 TCGA-BR-4184-01 1 210591562 210591562 G A HHAT Missense_Mutation p.R251H 0.15 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 1 210971031 210971031 C A KCNH1 Missense_Mutation p.E578D 0.11 tolerated(0.13) benign(0.016) TCGA-BR-4184-01 1 211192536 211192537 - G KCNH1 Frame_Shift_Ins p.H208Sfs*10 0.23 TCGA-BR-4184-01 1 211451507 211451507 A G RCOR3 Missense_Mutation p.K189E 0.30 deleterious(0) possibly_damaging(0.879) TCGA-BR-4184-01 1 211842455 211842455 G A NEK2 Nonsense_Mutation p.Q329* 0.22 TCGA-BR-4184-01 1 212273912 212273912 C T DTL Missense_Mutation p.P527L 0.24 deleterious(0) possibly_damaging(0.892) TCGA-BR-4184-01 1 213147195 213147195 G A VASH2 Intron 0.43 TCGA-BR-4184-01 1 213414415 213414415 G T RPS6KC1 Missense_Mutation p.E532D 0.21 deleterious(0.04) probably_damaging(0.997) TCGA-BR-4184-01 1 214171100 214171100 C T PROX1 Missense_Mutation p.R408C 0.29 deleterious(0) probably_damaging(0.998) TCGA-BR-4184-01 1 214178556 214178556 T - PROX1 Frame_Shift_Del p.Y594Ifs*10 0.15 TCGA-BR-4184-01 1 215793881 215793881 C T KCTD3 Missense_Mutation p.A790V 0.34 deleterious_low_confidence(0.01) probably_damaging(0.986) TCGA-BR-4184-01 1 216040396 216040396 G A USH2A Missense_Mutation p.A2933V 0.24 benign(0.03) TCGA-BR-4184-01 1 218607501 218607501 C T TGFB2 Silent p.G224G 0.51 TCGA-BR-4184-01 1 22030030 22030030 A G USP48 Missense_Mutation p.V866A 0.22 deleterious(0) benign(0.028) TCGA-BR-4184-01 1 220345285 220345285 C T RAB3GAP2 Silent p.A841A 0.22 TCGA-BR-4184-01 1 220970031 220970031 G A MARC1 Missense_Mutation p.A166T 0.14 deleterious(0.01) possibly_damaging(0.884) TCGA-BR-4184-01 1 221912575 221912575 C T DUSP10 Missense_Mutation p.G171D 0.25 tolerated(0.54) benign(0.11) TCGA-BR-4184-01 1 222717211 222717211 G A HHIPL2 Silent p.N214N 0.14 TCGA-BR-4184-01 1 222803003 222803003 G A MIA3 Missense_Mutation p.R814H 0.08 tolerated(0.21) benign(0.002) TCGA-BR-4184-01 1 222898866 222898866 C T BROX Silent p.Y183Y 0.34 TCGA-BR-4184-01 1 223177973 223177973 C T DISP1 Silent p.R1078R 0.24 TCGA-BR-4184-01 1 223283695 223283695 A - TLR5 3'UTR 0.39 TCGA-BR-4184-01 1 223933116 223933116 G A CAPN2 Missense_Mutation p.A179T 0.21 deleterious(0.02) benign(0.028) TCGA-BR-4184-01 1 224804748 224804748 G A CNIH3 5'UTR 0.20 TCGA-BR-4184-01 1 226253372 226253372 G A H3F3A Silent p.A48A 0.23 TCGA-BR-4184-01 1 226576444 226576444 G A PARP1 Silent p.G210G 0.29 TCGA-BR-4184-01 1 227085471 227085471 C T ADCK3 5'UTR 0.17 TCGA-BR-4184-01 1 228459736 228459736 G A OBSCN Missense_Mutation p.A1934T 0.11 probably_damaging(0.997) TCGA-BR-4184-01 1 228461716 228461716 G A OBSCN Missense_Mutation p.A2170T 0.33 benign(0.036) TCGA-BR-4184-01 1 228506834 228506834 G A OBSCN Missense_Mutation p.R5751H 0.50 probably_damaging(0.999) TCGA-BR-4184-01 1 228645350 228645350 C T HIST3H2A Missense_Mutation p.E57K 0.10 deleterious_low_confidence(0) possibly_damaging(0.784) TCGA-BR-4184-01 1 229568586 229568586 G A ACTA1 Silent p.G57G 0.24 TCGA-BR-4184-01 1 229676376 229676376 C T ABCB10 Missense_Mutation p.A394T 0.28 deleterious(0.04) probably_damaging(0.948) TCGA-BR-4184-01 1 229730363 229730363 G A TAF5L Missense_Mutation p.A484V 0.14 tolerated(0.08) possibly_damaging(0.694) TCGA-BR-4184-01 1 229771702 229771702 G A URB2 Missense_Mutation p.A448T 0.26 deleterious(0.01) possibly_damaging(0.527) TCGA-BR-4184-01 1 229783427 229783427 G T URB2 Missense_Mutation p.K1359N 0.23 deleterious(0.01) possibly_damaging(0.864) TCGA-BR-4184-01 1 230459161 230459161 G A PGBD5 3'UTR 0.37 TCGA-BR-4184-01 1 230492910 230492910 C T PGBD5 Silent p.T94T 0.20 TCGA-BR-4184-01 1 230910313 230910313 C T CAPN9 Missense_Mutation p.R297C 0.19 deleterious(0.03) possibly_damaging(0.704) TCGA-BR-4184-01 1 231090101 231090101 C T TTC13 Missense_Mutation p.R164Q 0.19 tolerated(0.42) benign(0.001) TCGA-BR-4184-01 1 231471819 231471819 T C EXOC8 Missense_Mutation p.Y558C 0.27 tolerated(0.16) benign(0.002) TCGA-BR-4184-01 1 23191488 23191488 C T EPHB2 Silent p.C362C 0.22 TCGA-BR-4184-01 1 23520801 23520801 G A HTR1D 5'UTR 0.36 TCGA-BR-4184-01 1 236228195 236228195 G A NID1 Missense_Mutation p.A62V 0.44 deleterious(0.02) benign(0.005) TCGA-BR-4184-01 1 236399414 236399414 A G ERO1LB Intron 0.27 TCGA-BR-4184-01 1 237054573 237054573 G A MTR Missense_Mutation p.A1050T 0.29 deleterious(0.05) benign(0) TCGA-BR-4184-01 1 237664107 237664107 C T RYR2 Missense_Mutation p.S767L 0.33 probably_damaging(0.999) TCGA-BR-4184-01 1 237774245 237774245 G A RYR2 Missense_Mutation p.D1623N 0.36 benign(0.001) TCGA-BR-4184-01 1 237780631 237780631 C G RYR2 Missense_Mutation p.R1921G 0.26 probably_damaging(0.978) TCGA-BR-4184-01 1 241695795 241695795 C A KMO Silent p.G17G 0.20 TCGA-BR-4184-01 1 24410941 24410941 C T MYOM3 Intron 0.26 TCGA-BR-4184-01 1 244217659 244217659 C T ZBTB18 Nonsense_Mutation p.R195* 0.12 TCGA-BR-4184-01 1 244869074 244869074 C T DESI2 Missense_Mutation p.R190C 0.35 deleterious_low_confidence(0) benign(0.183) TCGA-BR-4184-01 1 247030584 247030584 A - AHCTF1 Frame_Shift_Del p.F1112Lfs*16 0.15 TCGA-BR-4184-01 1 247320104 247320104 C T ZNF124 Missense_Mutation p.A212T 0.09 tolerated(0.39) benign(0.004) TCGA-BR-4184-01 1 247492570 247492570 G A ZNF496 Missense_Mutation p.A104V 0.40 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 1 247492680 247492680 G A ZNF496 Silent p.C67C 0.18 TCGA-BR-4184-01 1 247654661 247654661 G A OR2W5 RNA 0.20 TCGA-BR-4184-01 1 248366705 248366705 C T OR2M3 Silent p.C112C 0.06 TCGA-BR-4184-01 1 249108714 249108714 G A SH3BP5L Silent p.G157G 0.23 TCGA-BR-4184-01 1 249211828 249211828 T - PGBD2 Frame_Shift_Del p.F350Lfs*10 0.23 TCGA-BR-4184-01 1 249211954 249211954 A - PGBD2 Frame_Shift_Del p.M393* 0.25 TCGA-BR-4184-01 1 2527522 2527522 G A MMEL1 Missense_Mutation p.R476W 0.27 deleterious(0) probably_damaging(0.993) TCGA-BR-4184-01 1 25883728 25883728 C T LDLRAP1 Silent p.C143C 0.26 TCGA-BR-4184-01 1 26349584 26349584 G A EXTL1 Missense_Mutation p.M149I 0.22 tolerated(0.12) benign(0.003) TCGA-BR-4184-01 1 26737994 26737994 G A LIN28A Missense_Mutation p.R50H 0.20 tolerated(0.28) benign(0.013) TCGA-BR-4184-01 1 26900639 26900639 T C RPS6KA1 Missense_Mutation p.S728P 0.21 tolerated(0.07) possibly_damaging(0.696) TCGA-BR-4184-01 1 27101364 27101364 G T ARID1A Missense_Mutation p.G1549V 0.28 unknown(0) TCGA-BR-4184-01 1 27105886 27105886 C T ARID1A Missense_Mutation p.R1833C 0.27 possibly_damaging(0.723) TCGA-BR-4184-01 1 27657215 27657215 T - TMEM222 Frame_Shift_Del p.F68Sfs*85 0.24 TCGA-BR-4184-01 1 27720703 27720703 G A GPR3 Missense_Mutation p.R134H 0.17 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 1 28176610 28176610 C T PPP1R8 Missense_Mutation p.R237C 0.16 deleterious(0) possibly_damaging(0.841) TCGA-BR-4184-01 1 29070189 29070189 C T YTHDF2 Silent p.G469G 0.25 TCGA-BR-4184-01 1 29365769 29365769 G C EPB41 Missense_Mutation p.L489F 0.31 deleterious(0) probably_damaging(0.996) TCGA-BR-4184-01 1 29533360 29533360 T C MECR Missense_Mutation p.D155G 0.16 deleterious(0.02) benign(0.014) TCGA-BR-4184-01 1 31838774 31838774 C T FABP3 Missense_Mutation p.G121S 0.21 tolerated(0.07) benign(0.233) TCGA-BR-4184-01 1 32042850 32042850 G A TINAGL1 Missense_Mutation p.G34D 0.24 deleterious(0.01) possibly_damaging(0.529) TCGA-BR-4184-01 1 32049118 32049118 G A TINAGL1 Missense_Mutation p.R175H 0.16 deleterious(0.02) benign(0.033) TCGA-BR-4184-01 1 32265460 32265460 C T SPOCD1 Missense_Mutation p.G578D 0.12 tolerated(0.13) possibly_damaging(0.811) TCGA-BR-4184-01 1 32690021 32690021 G A EIF3I Silent p.K65K 0.10 TCGA-BR-4184-01 1 33160998 33160998 C T SYNC Missense_Mutation p.G234D 0.33 deleterious(0.02) probably_damaging(0.993) TCGA-BR-4184-01 1 33836643 33836643 G A PHC2 Missense_Mutation p.A129V 0.38 tolerated(0.18) benign(0.064) TCGA-BR-4184-01 1 33840979 33840979 C T PHC2 Silent p.R54R 0.19 TCGA-BR-4184-01 1 33944899 33944899 G A ZSCAN20 Missense_Mutation p.A4T 0.09 deleterious(0.01) benign(0.006) TCGA-BR-4184-01 1 33985194 33985194 T C CSMD2 Missense_Mutation p.D3463G 0.30 deleterious(0.01) probably_damaging(0.971) TCGA-BR-4184-01 1 34128652 34128652 C T CSMD2 Missense_Mutation p.V1325M 0.43 tolerated(0.07) possibly_damaging(0.843) TCGA-BR-4184-01 1 35855553 35855553 C T ZMYM4 Missense_Mutation p.A814V 0.12 deleterious(0.01) benign(0.24) TCGA-BR-4184-01 1 36074953 36074953 C T PSMB2 Silent p.A114A 0.09 TCGA-BR-4184-01 1 36203693 36203693 C T CLSPN Silent p.Q1188Q 0.29 TCGA-BR-4184-01 1 3624161 3624161 G A TP73 Missense_Mutation p.A79T 0.20 tolerated(0.06) benign(0.022) TCGA-BR-4184-01 1 36367904 36367904 G A AGO1 Missense_Mutation p.A455T 0.22 tolerated(0.08) benign(0.129) TCGA-BR-4184-01 1 36752635 36752635 C - THRAP3 Frame_Shift_Del p.V270Cfs*40 0.23 TCGA-BR-4184-01 1 36886127 36886127 G A OSCP1 Silent p.G303G 0.06 TCGA-BR-4184-01 1 3768869 3768869 G A CEP104 Missense_Mutation p.R35W 0.26 deleterious(0) probably_damaging(0.988) TCGA-BR-4184-01 1 38227345 38227345 G A EPHA10 Silent p.D194D 0.22 TCGA-BR-4184-01 1 39797772 39797772 G A MACF1 Intron 0.32 TCGA-BR-4184-01 1 39926453 39926453 C T MACF1 Silent p.G5111G 0.18 TCGA-BR-4184-01 1 39951352 39951352 C T MACF1 Silent p.S5393S 0.19 TCGA-BR-4184-01 1 40027379 40027381 AGC - PABPC4 In_Frame_Del p.A658del 0.17 TCGA-BR-4184-01 1 40702413 40702413 G A RLF Missense_Mutation p.R680H 0.24 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 1 40705591 40705591 A - RLF Frame_Shift_Del p.N1741Ifs*21 0.22 TCGA-BR-4184-01 1 40887722 40887722 C T SMAP2 Silent p.G413G 0.22 TCGA-BR-4184-01 1 40981166 40981166 C T EXO5 Missense_Mutation p.A317V 0.11 tolerated(0.19) benign(0.005) TCGA-BR-4184-01 1 41300742 41300742 C T KCNQ4 Silent p.L573L 0.26 TCGA-BR-4184-01 1 41483534 41483534 G A SLFNL1 Missense_Mutation p.R244W 0.27 deleterious(0) probably_damaging(0.991) TCGA-BR-4184-01 1 42664858 42664858 C T FOXJ3 Missense_Mutation p.R225H 0.18 tolerated(0.22) possibly_damaging(0.864) TCGA-BR-4184-01 1 43889992 43889992 C T SZT2 Missense_Mutation p.A787V 0.19 deleterious(0.02) probably_damaging(0.927) TCGA-BR-4184-01 1 43896333 43896333 C T SZT2 Silent p.G1492G 0.31 TCGA-BR-4184-01 1 43904428 43904428 G A SZT2 Silent p.T2132T 0.34 TCGA-BR-4184-01 1 44086246 44086246 C T PTPRF Missense_Mutation p.A1787V 0.24 deleterious(0) probably_damaging(0.927) TCGA-BR-4184-01 1 44128589 44128589 C T KDM4A Missense_Mutation p.R152W 0.28 deleterious(0) benign(0.288) TCGA-BR-4184-01 1 44137305 44137305 G A KDM4A Missense_Mutation p.R498H 0.40 tolerated(0.15) benign(0.289) TCGA-BR-4184-01 1 44438269 44438269 G A DPH2 3'UTR 0.31 TCGA-BR-4184-01 1 44446911 44446911 G A B4GALT2 Missense_Mutation p.A56T 0.29 tolerated(0.94) benign(0.104) TCGA-BR-4184-01 1 44467145 44467145 C T SLC6A9 Missense_Mutation p.E446K 0.26 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 1 44468044 44468044 G A SLC6A9 Silent p.C374C 0.11 TCGA-BR-4184-01 1 44877906 44877906 G A RNF220 Missense_Mutation p.R46Q 0.08 deleterious(0.01) probably_damaging(0.992) TCGA-BR-4184-01 1 45110700 45110700 C T RNF220 Silent p.G419G 0.18 TCGA-BR-4184-01 1 47689698 47689698 G - TAL1 Frame_Shift_Del p.Y174Mfs*30 0.19 TCGA-BR-4184-01 1 49208298 49208298 G T BEND5 Silent p.G297G 0.26 TCGA-BR-4184-01 1 51050377 51050377 G A FAF1 Missense_Mutation p.A316V 0.23 tolerated(0.28) benign(0.014) TCGA-BR-4184-01 1 51767382 51767382 G A TTC39A Silent p.C309C 0.28 TCGA-BR-4184-01 1 52530571 52530571 A - BTF3L4 Frame_Shift_Del p.K45Nfs*4 0.28 TCGA-BR-4184-01 1 52851607 52851607 C T ORC1 Silent p.T466T 0.13 TCGA-BR-4184-01 1 52954594 52954594 C T ZCCHC11 Missense_Mutation p.R501H 0.10 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 1 55562761 55562761 G A USP24 Nonsense_Mutation p.R1934* 0.24 TCGA-BR-4184-01 1 60375619 60375619 A G CYP2J2 Missense_Mutation p.F233S 0.08 deleterious(0.01) possibly_damaging(0.619) TCGA-BR-4184-01 1 62293227 62293227 G A INADL Missense_Mutation p.R651H 0.18 tolerated(0.16) benign(0.02) TCGA-BR-4184-01 1 6257785 6257785 T - RPL22 Frame_Shift_Del p.K15Rfs*5 0.40 TCGA-BR-4184-01 1 6278394 6278394 G A RNF207 Silent p.T566T 0.24 TCGA-BR-4184-01 1 62993865 62993865 A G DOCK7 Missense_Mutation p.V1267A 0.23 tolerated(0.15) benign(0.096) TCGA-BR-4184-01 1 63113777 63113777 C T DOCK7 Silent p.E244E 0.10 TCGA-BR-4184-01 1 6311422 6311422 C A GPR153 Missense_Mutation p.A319S 0.33 tolerated(1) benign(0.026) TCGA-BR-4184-01 1 63912521 63912521 C T ITGB3BP Missense_Mutation p.R203H 0.22 tolerated(0.68) benign(0.002) TCGA-BR-4184-01 1 63991248 63991248 C T EFCAB7 Missense_Mutation p.A2V 0.20 tolerated_low_confidence(0.05) possibly_damaging(0.634) TCGA-BR-4184-01 1 63999206 63999206 C T EFCAB7 Missense_Mutation p.R190C 0.05 tolerated(0.17) benign(0.008) TCGA-BR-4184-01 1 64034139 64034139 C T EFCAB7 Silent p.I552I 0.17 TCGA-BR-4184-01 1 65344791 65344791 G A JAK1 Silent p.D82D 0.09 TCGA-BR-4184-01 1 65851520 65851520 G A DNAJC6 Missense_Mutation p.R309H 0.32 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 1 6593377 6593378 CT - NOL9 Frame_Shift_Del p.E400Vfs*21 0.27 TCGA-BR-4184-01 1 6642155 6642155 G A ZBTB48 Missense_Mutation p.G243D 0.27 tolerated(0.45) benign(0.113) TCGA-BR-4184-01 1 6680350 6680350 G A PHF13 Missense_Mutation p.R210Q 0.17 deleterious(0.01) possibly_damaging(0.837) TCGA-BR-4184-01 1 67724598 67724598 T G IL23R Missense_Mutation p.S559R 0.28 tolerated(0.08) possibly_damaging(0.883) TCGA-BR-4184-01 1 67838350 67838350 A G IL12RB2 Missense_Mutation p.K534R 0.31 tolerated(0.3) benign(0.049) TCGA-BR-4184-01 1 68171151 68171151 T - GNG12 Frame_Shift_Del p.T68Lfs*22 0.19 TCGA-BR-4184-01 1 68659743 68659743 A C WLS Missense_Mutation p.F90V 0.31 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 1 68912408 68912408 A T RPE65 Missense_Mutation p.V77D 0.21 deleterious(0) probably_damaging(0.975) TCGA-BR-4184-01 1 70478695 70478695 C T LRRC7 Silent p.R353R 0.19 TCGA-BR-4184-01 1 70700384 70700384 C T SRSF11 Silent p.G151G 0.13 TCGA-BR-4184-01 1 70766510 70766510 C T ANKRD13C Silent p.A286A 0.30 TCGA-BR-4184-01 1 76272778 76272778 C A MSH4 Missense_Mutation p.N180K 0.21 tolerated(0.6) benign(0.063) TCGA-BR-4184-01 1 7700554 7700554 A C CAMTA1 Missense_Mutation p.D202A 0.33 deleterious(0) probably_damaging(0.978) TCGA-BR-4184-01 1 78162947 78162947 A G USP33 3'UTR 0.14 TCGA-BR-4184-01 1 78187762 78187762 G A USP33 Silent p.G534G 0.25 TCGA-BR-4184-01 1 79128420 79128420 C A IFI44 Missense_Mutation p.A382D 0.22 deleterious(0) possibly_damaging(0.802) TCGA-BR-4184-01 1 7993308 7993308 G A TNFRSF9 Missense_Mutation p.A198V 0.11 tolerated(0.26) benign(0.004) TCGA-BR-4184-01 1 8425885 8425885 C T RERE Silent p.P478P 0.28 TCGA-BR-4184-01 1 84961086 84961086 G A RPF1 Missense_Mutation p.G216D 0.15 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 1 85331763 85331764 - A LPAR3 Frame_Shift_Ins p.Y14Lfs*2 0.21 TCGA-BR-4184-01 1 85559307 85559307 G A WDR63 Missense_Mutation p.V342I 0.24 tolerated(0.51) benign(0.02) TCGA-BR-4184-01 1 86591810 86591810 G A COL24A1 Missense_Mutation p.P70L 0.20 tolerated(0.24) benign(0.003) TCGA-BR-4184-01 1 86900199 86900199 A G CLCA2 Splice_Site p.X249_splice 0.35 TCGA-BR-4184-01 1 87333766 87333766 T C SEP15 Silent p.K109K 0.29 TCGA-BR-4184-01 1 87538675 87538675 C T HS2ST1 Silent p.G61G 0.27 TCGA-BR-4184-01 1 883877 883877 G A NOC2L Missense_Mutation p.A517V 0.15 tolerated(0.05) possibly_damaging(0.577) TCGA-BR-4184-01 1 89847396 89847396 G A GBP6 Missense_Mutation p.A339T 0.11 tolerated(0.16) benign(0.12) TCGA-BR-4184-01 1 9005999 9005999 G A CA6 Silent p.Q18Q 0.13 TCGA-BR-4184-01 1 90398905 90398905 G A LRRC8D Missense_Mutation p.R93Q 0.26 tolerated(0.72) benign(0) TCGA-BR-4184-01 1 90400837 90400837 G A LRRC8D Missense_Mutation p.S737N 0.16 deleterious(0) benign(0.086) TCGA-BR-4184-01 1 9063462 9063462 C T SLC2A7 Missense_Mutation p.R479H 0.17 tolerated(0.2) benign(0.036) TCGA-BR-4184-01 1 9097693 9097693 C T SLC2A5 Silent p.P486P 0.12 TCGA-BR-4184-01 1 91818691 91818691 G T HFM1 Missense_Mutation p.A583D 0.22 deleterious(0) benign(0.317) TCGA-BR-4184-01 1 91844024 91844024 C T HFM1 Missense_Mutation p.S391N 0.07 deleterious(0.04) possibly_damaging(0.641) TCGA-BR-4184-01 1 91977470 91977470 C T CDC7 Missense_Mutation p.R188C 0.35 deleterious(0.02) benign(0.052) TCGA-BR-4184-01 1 92327108 92327108 C T TGFBR3 5'UTR 0.09 TCGA-BR-4184-01 1 92643912 92643912 C T KIAA1107 Missense_Mutation p.P391S 0.38 tolerated(0.15) benign(0.37) TCGA-BR-4184-01 1 9324910 9324910 C T H6PD Silent p.Y786Y 0.22 TCGA-BR-4184-01 1 93309348 93309348 G A FAM69A Silent p.C293C 0.40 TCGA-BR-4184-01 1 93584943 93584943 G A MTF2 Missense_Mutation p.R261H 0.27 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 1 94001888 94001888 G A FNBP1L Splice_Site p.X331_splice 0.25 TCGA-BR-4184-01 1 94018104 94018104 T - FNBP1L 3'UTR 0.41 TCGA-BR-4184-01 1 94140374 94140374 C T BCAR3 Missense_Mutation p.R38H 0.10 tolerated_low_confidence(0.39) benign(0.002) TCGA-BR-4184-01 1 94360188 94360188 T C GCLM Missense_Mutation p.T213A 0.28 deleterious(0.04) possibly_damaging(0.489) TCGA-BR-4184-01 1 95448750 95448750 A G ALG14 Missense_Mutation p.V178A 0.28 deleterious(0.01) probably_damaging(0.996) TCGA-BR-4184-01 1 99380468 99380468 G A LPPR5 Silent p.C269C 0.07 TCGA-BR-4184-01 20 10036276 10036276 G A ANKEF1 Missense_Mutation p.A767T 0.14 deleterious(0.03) possibly_damaging(0.849) TCGA-BR-4184-01 20 10393700 10393700 G A MKKS Missense_Mutation p.R155C 0.14 deleterious(0.02) benign(0.4) TCGA-BR-4184-01 20 10603861 10603861 C T SLX4IP Missense_Mutation p.T354M 0.17 tolerated(0.35) benign(0.009) TCGA-BR-4184-01 20 10620233 10620233 C T JAG1 Silent p.P1190P 0.08 TCGA-BR-4184-01 20 1277814 1277814 C T SNPH Missense_Mutation p.R26W 0.22 deleterious(0) probably_damaging(0.992) TCGA-BR-4184-01 20 13370985 13370985 G A TASP1 3'UTR 0.26 TCGA-BR-4184-01 20 13604122 13604122 C T TASP1 Missense_Mutation p.A85T 0.22 deleterious(0.04) probably_damaging(0.964) TCGA-BR-4184-01 20 13763615 13763615 G A ESF1 Missense_Mutation p.R58C 0.41 deleterious(0.01) benign(0.005) TCGA-BR-4184-01 20 1459011 1459011 G A SIRPB2 Silent p.N231N 0.11 TCGA-BR-4184-01 20 14665514 14665514 C T MACROD2 Silent p.A109A 0.19 TCGA-BR-4184-01 20 1558987 1558987 G A RP4-576H24.4 Missense_Mutation p.R143C 0.15 tolerated(0.1) possibly_damaging(0.901) TCGA-BR-4184-01 20 1616842 1616842 G A SIRPG Missense_Mutation p.A247V 0.12 tolerated(0.43) benign(0.006) TCGA-BR-4184-01 20 16253869 16253869 C T KIF16B 3'UTR 0.16 TCGA-BR-4184-01 20 18296267 18296267 G A ZNF133 Missense_Mutation p.A257T 0.12 tolerated(0.32) possibly_damaging(0.538) TCGA-BR-4184-01 20 18535003 18535003 G A SEC23B Missense_Mutation p.R706H 0.21 deleterious(0) probably_damaging(0.998) TCGA-BR-4184-01 20 19674014 19674014 C T SLC24A3 Missense_Mutation p.T479M 0.17 deleterious(0) probably_damaging(0.915) TCGA-BR-4184-01 20 20493786 20493786 G A RALGAPA2 Silent p.A1409A 0.16 TCGA-BR-4184-01 20 20552181 20552181 C T RALGAPA2 Missense_Mutation p.R1026H 0.15 tolerated(0.18) benign(0.02) TCGA-BR-4184-01 20 20571843 20571843 C T RALGAPA2 Silent p.P773P 0.15 TCGA-BR-4184-01 20 2097969 2097969 G A STK35 Missense_Mutation p.R517Q 0.07 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 20 21309294 21309294 A G XRN2 Missense_Mutation p.E138G 0.12 deleterious(0.02) probably_damaging(0.986) TCGA-BR-4184-01 20 23016316 23016316 G A SSTR4 Missense_Mutation p.A66T 0.22 tolerated(1) benign(0.315) TCGA-BR-4184-01 20 23065010 23065010 C T CD93 Missense_Mutation p.R607H 0.13 deleterious(0.02) benign(0.252) TCGA-BR-4184-01 20 23065523 23065523 C - CD93 Frame_Shift_Del p.G436Afs*152 0.29 TCGA-BR-4184-01 20 2312868 2312868 C T TGM3 Silent p.N518N 0.10 TCGA-BR-4184-01 20 23345592 23345592 G A GZF1 Missense_Mutation p.G191D 0.15 tolerated(0.17) benign(0.015) TCGA-BR-4184-01 20 23346300 23346300 G A GZF1 Missense_Mutation p.R427H 0.15 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 20 23432462 23432462 C T CST11 Silent p.E108E 0.21 TCGA-BR-4184-01 20 2442418 2442418 C T SNRPB Missense_Mutation p.R236H 0.20 tolerated_low_confidence(0.36) unknown(0) TCGA-BR-4184-01 20 24940386 24940386 A G CST7 3'UTR 0.32 TCGA-BR-4184-01 20 25187856 25187856 G A ENTPD6 Missense_Mutation p.A67T 0.20 tolerated(0.08) benign(0.035) TCGA-BR-4184-01 20 25273229 25273229 C T PYGB Silent p.V719V 0.23 TCGA-BR-4184-01 20 25656373 25656374 - A ZNF337 Frame_Shift_Ins p.C518Lfs*33 0.11 TCGA-BR-4184-01 20 25657197 25657197 G A ZNF337 Nonsense_Mutation p.R243* 0.23 TCGA-BR-4184-01 20 257710 257710 T G C20orf96 Missense_Mutation p.K267T 0.05 deleterious(0.04) benign(0.081) TCGA-BR-4184-01 20 2621828 2621828 C T TMC2 Missense_Mutation p.A851V 0.09 tolerated(0.12) benign(0.004) TCGA-BR-4184-01 20 2774726 2774726 G A CPXM1 3'UTR 0.25 TCGA-BR-4184-01 20 2776949 2776949 G A CPXM1 Missense_Mutation p.R396C 0.10 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 20 2796188 2796188 G A C20orf141 Missense_Mutation p.A89T 0.25 tolerated(0.83) benign(0.004) TCGA-BR-4184-01 20 2818955 2818955 C T PCED1A Missense_Mutation p.R255H 0.14 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 20 2840446 2840446 C T VPS16 Silent p.G45G 0.24 TCGA-BR-4184-01 20 2945651 2945651 C T PTPRA Missense_Mutation p.P73L 0.07 deleterious_low_confidence(0.02) benign(0.003) TCGA-BR-4184-01 20 30147438 30147438 G A HM13 Missense_Mutation p.R278H 0.16 deleterious(0.05) probably_damaging(0.996) TCGA-BR-4184-01 20 30745754 30745754 A G TM9SF4 Missense_Mutation p.Y496C 0.10 deleterious(0.01) possibly_damaging(0.656) TCGA-BR-4184-01 20 30803242 30803242 G A POFUT1 Silent p.T139T 0.18 TCGA-BR-4184-01 20 31041289 31041289 G A C20orf112 Missense_Mutation p.R195C 0.17 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 20 31044021 31044021 G A C20orf112 Missense_Mutation p.P96L 0.19 tolerated(0.42) benign(0.001) TCGA-BR-4184-01 20 3128084 3128084 G A FASTKD5 Silent p.L545L 0.08 TCGA-BR-4184-01 20 31383281 31383281 G A DNMT3B Missense_Mutation p.R398H 0.11 deleterious(0.01) probably_damaging(0.994) TCGA-BR-4184-01 20 31386409 31386409 G A DNMT3B Missense_Mutation p.R545H 0.11 deleterious(0.03) probably_damaging(0.995) TCGA-BR-4184-01 20 31657706 31657706 C T BPIFB3 Missense_Mutation p.R388C 0.17 deleterious(0.04) possibly_damaging(0.759) TCGA-BR-4184-01 20 31890858 31890858 G A BPIFB1 Missense_Mutation p.R373H 0.09 tolerated(0.17) benign(0.14) TCGA-BR-4184-01 20 31954730 31954730 G T CDK5RAP1 Silent p.R493R 0.18 TCGA-BR-4184-01 20 3209061 3209061 G A SLC4A11 Missense_Mutation p.P844L 0.13 deleterious(0) possibly_damaging(0.493) TCGA-BR-4184-01 20 3210034 3210034 C T SLC4A11 Missense_Mutation p.A646T 0.08 tolerated(0.64) benign(0.001) TCGA-BR-4184-01 20 3214613 3214613 C T SLC4A11 Missense_Mutation p.A230T 0.09 tolerated(0.06) possibly_damaging(0.903) TCGA-BR-4184-01 20 32199012 32199012 A G CBFA2T2 Silent p.Q106Q 0.07 TCGA-BR-4184-01 20 32661432 32661432 C T RALY Missense_Mutation p.A107V 0.11 tolerated(0.08) benign(0.03) TCGA-BR-4184-01 20 33147564 33147564 G A MAP1LC3A Silent p.T80T 0.13 TCGA-BR-4184-01 20 33568472 33568472 G A MYH7B Missense_Mutation p.R187H 0.09 probably_damaging(0.999) TCGA-BR-4184-01 20 33764049 33764049 C A PROCR Missense_Mutation p.A134D 0.23 deleterious(0.04) possibly_damaging(0.803) TCGA-BR-4184-01 20 34091280 34091280 C T CEP250 Nonsense_Mutation p.R1695* 0.10 TCGA-BR-4184-01 20 34144078 34144078 C T ERGIC3 Intron 0.32 TCGA-BR-4184-01 20 34240428 34240428 A - RBM12 3'UTR 0.30 TCGA-BR-4184-01 20 34262504 34262504 C A NFS1 Silent p.R328R 0.08 TCGA-BR-4184-01 20 34526851 34526851 C T PHF20 Missense_Mutation p.R845C 0.14 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 20 34773105 34773105 G A EPB41L1 Silent p.T211T 0.19 TCGA-BR-4184-01 20 34797730 34797730 G - EPB41L1 Frame_Shift_Del p.A665Pfs*31 0.21 TCGA-BR-4184-01 20 3528132 3528132 G A ATRN Nonsense_Mutation p.W313* 0.15 TCGA-BR-4184-01 20 35748936 35748937 TA - MROH8 Frame_Shift_Del p.H760Qfs*30 0.21 TCGA-BR-4184-01 20 35788560 35788560 C T MROH8 Missense_Mutation p.R250H 0.16 tolerated(0.06) benign(0.001) TCGA-BR-4184-01 20 3584894 3584894 G A ATRN Nonsense_Mutation p.W1262* 0.16 TCGA-BR-4184-01 20 36779458 36779458 C T TGM2 Silent p.A145A 0.11 TCGA-BR-4184-01 20 3678463 3678463 C A SIGLEC1 Missense_Mutation p.A702S 0.18 tolerated(0.09) possibly_damaging(0.515) TCGA-BR-4184-01 20 3683963 3683963 G A SIGLEC1 Missense_Mutation p.A370V 0.06 tolerated(0.11) benign(0.084) TCGA-BR-4184-01 20 36869866 36869866 G T KIAA1755 Missense_Mutation p.P223T 0.33 tolerated(0.11) benign(0.185) TCGA-BR-4184-01 20 37194098 37194098 T C RALGAPB Missense_Mutation p.V1265A 0.09 deleterious(0) possibly_damaging(0.803) TCGA-BR-4184-01 20 37353656 37353656 G A SLC32A1 Missense_Mutation p.G97S 0.08 tolerated(0.45) benign(0) TCGA-BR-4184-01 20 37356122 37356122 G A SLC32A1 Missense_Mutation p.A140T 0.20 tolerated(0.09) benign(0.379) TCGA-BR-4184-01 20 37356232 37356232 C T SLC32A1 Silent p.D176D 0.11 TCGA-BR-4184-01 20 37357187 37357187 G A SLC32A1 Missense_Mutation p.A495T 0.14 tolerated(0.18) benign(0.23) TCGA-BR-4184-01 20 37380797 37380797 G A ACTR5 Missense_Mutation p.R210H 0.10 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 20 37531340 37531340 C T PPP1R16B Missense_Mutation p.R201W 0.07 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 20 37634988 37634988 G A DHX35 Missense_Mutation p.R404H 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-BR-4184-01 20 37653971 37653971 C A DHX35 Silent p.V590V 0.50 TCGA-BR-4184-01 20 3846580 3846580 T C MAVS Missense_Mutation p.V470A 0.11 deleterious(0) probably_damaging(0.996) TCGA-BR-4184-01 20 389297 389297 G A RBCK1 5'UTR 0.38 TCGA-BR-4184-01 20 39798904 39798904 G A PLCG1 Missense_Mutation p.A935T 0.26 tolerated(0.39) probably_damaging(0.999) TCGA-BR-4184-01 20 39831218 39831218 C T ZHX3 Missense_Mutation p.R780Q 0.29 deleterious(0.01) possibly_damaging(0.455) TCGA-BR-4184-01 20 40050618 40050618 G A CHD6 Missense_Mutation p.L1553F 0.26 deleterious(0) probably_damaging(0.996) TCGA-BR-4184-01 20 40111989 40111989 G A CHD6 Missense_Mutation p.R810C 0.21 deleterious(0) probably_damaging(0.994) TCGA-BR-4184-01 20 40120415 40120415 G A CHD6 Silent p.R453R 0.11 TCGA-BR-4184-01 20 40714491 40714491 G T PTPRT Missense_Mutation p.F1283L 0.10 tolerated(0.69) benign(0.001) TCGA-BR-4184-01 20 409612 409612 C T RBCK1 Silent p.G442G 0.48 TCGA-BR-4184-01 20 41400120 41400120 G A PTPRT Silent p.C213C 0.15 TCGA-BR-4184-01 20 4155700 4155700 G A SMOX 5'UTR 0.12 TCGA-BR-4184-01 20 4202178 4202178 C T ADRA1D Missense_Mutation p.D571N 0.18 deleterious_low_confidence(0.03) benign(0.025) TCGA-BR-4184-01 20 42088823 42088823 C A SRSF6 Missense_Mutation p.L178I 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-BR-4184-01 20 42311438 42311438 G A MYBL2 Missense_Mutation p.R64H 0.11 tolerated(0.11) probably_damaging(1) TCGA-BR-4184-01 20 42338670 42338670 G A MYBL2 Missense_Mutation p.A525T 0.13 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 20 42815111 42815111 G A JPH2 Missense_Mutation p.R79C 0.14 deleterious(0) possibly_damaging(0.708) TCGA-BR-4184-01 20 43052918 43052918 C T HNF4A Intron 0.25 TCGA-BR-4184-01 20 43607098 43607098 T C STK4 Missense_Mutation p.V44A 0.08 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 20 43940918 43940918 C T RBPJL Missense_Mutation p.R168W 0.15 deleterious(0.05) probably_damaging(0.998) TCGA-BR-4184-01 20 44592274 44592274 C T ZNF335 Silent p.S457S 0.07 TCGA-BR-4184-01 20 44680471 44680471 G A SLC12A5 Missense_Mutation p.R803H 0.19 deleterious(0.01) possibly_damaging(0.791) TCGA-BR-4184-01 20 44685882 44685882 G A SLC12A5 Missense_Mutation p.A1090T 0.11 deleterious(0) possibly_damaging(0.848) TCGA-BR-4184-01 20 44698981 44698981 A G NCOA5 Missense_Mutation p.V78A 0.10 tolerated_low_confidence(0.49) unknown(0) TCGA-BR-4184-01 20 44845612 44845612 G A CDH22 Missense_Mutation p.P231S 0.08 tolerated(0.31) benign(0.02) TCGA-BR-4184-01 20 45003964 45003964 C T ELMO2 Missense_Mutation p.A326T 0.17 tolerated(0.59) benign(0.044) TCGA-BR-4184-01 20 45130769 45130769 T - ZNF334 Frame_Shift_Del p.K403Nfs*51 0.13 TCGA-BR-4184-01 20 45212284 45212284 G A SLC13A3 Silent p.G382G 0.25 TCGA-BR-4184-01 20 45839355 45839355 C T ZMYND8 3'Flank 0.12 TCGA-BR-4184-01 20 46264165 46264165 G A NCOA3 Silent p.S404S 0.11 TCGA-BR-4184-01 20 4680430 4680430 G A PRNP Silent p.T188T 0.19 TCGA-BR-4184-01 20 47247280 47247280 C T PREX1 Missense_Mutation p.V1527I 0.08 tolerated(0.06) benign(0.007) TCGA-BR-4184-01 20 47364404 47364404 C T PREX1 Missense_Mutation p.R78H 0.11 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 20 47614883 47614883 C T ARFGEF2 Silent p.V1091V 0.13 TCGA-BR-4184-01 20 47639702 47639702 A G ARFGEF2 Missense_Mutation p.H1580R 0.23 tolerated(0.17) benign(0.063) TCGA-BR-4184-01 20 47734608 47734608 C T STAU1 Missense_Mutation p.M405I 0.09 tolerated(0.28) benign(0.101) TCGA-BR-4184-01 20 4842713 4842713 C T SLC23A2 Missense_Mutation p.G502D 0.17 deleterious(0) probably_damaging(0.981) TCGA-BR-4184-01 20 48503391 48503391 G A SLC9A8 Missense_Mutation p.A548T 0.10 tolerated(0.55) benign(0.016) TCGA-BR-4184-01 20 48741643 48741643 G A TMEM189 Intron 0.23 TCGA-BR-4184-01 20 49366779 49366779 C T PARD6B Silent p.S291S 0.08 TCGA-BR-4184-01 20 49446904 49446904 T C BCAS4 Missense_Mutation p.V114A 0.13 deleterious(0) probably_damaging(0.998) TCGA-BR-4184-01 20 49520470 49520470 T - ADNP Frame_Shift_Del p.I22Yfs*14 0.17 TCGA-BR-4184-01 20 50312633 50312634 - T ATP9A Frame_Shift_Ins p.N182Kfs*50 0.12 TCGA-BR-4184-01 20 50407173 50407173 G T SALL4 Silent p.R617R 0.17 TCGA-BR-4184-01 20 50408447 50408447 G A SALL4 Missense_Mutation p.A192V 0.21 deleterious(0) probably_damaging(0.997) TCGA-BR-4184-01 20 50408840 50408840 G A SALL4 Missense_Mutation p.A61V 0.08 tolerated(0.54) benign(0.002) TCGA-BR-4184-01 20 50701279 50701279 G A ZFP64 Silent p.C585C 0.17 TCGA-BR-4184-01 20 50781293 50781293 C G ZFP64 Missense_Mutation p.C151S 0.08 deleterious(0) probably_damaging(0.983) TCGA-BR-4184-01 20 52188261 52188261 T - ZNF217 Intron 0.15 TCGA-BR-4184-01 20 52193292 52193292 C T ZNF217 Missense_Mutation p.A671T 0.05 tolerated(0.52) benign(0.004) TCGA-BR-4184-01 20 52198090 52198090 C T ZNF217 Missense_Mutation p.A426T 0.15 tolerated(0.62) benign(0.001) TCGA-BR-4184-01 20 5283032 5283032 C T PROKR2 Missense_Mutation p.R270H 0.16 deleterious(0) probably_damaging(0.998) TCGA-BR-4184-01 20 53171481 53171481 C T DOK5 Nonsense_Mutation p.R26* 0.09 TCGA-BR-4184-01 20 55099784 55099784 C A FAM209A 5'UTR 0.15 TCGA-BR-4184-01 20 55777649 55777649 A G BMP7 Silent p.R214R 0.10 TCGA-BR-4184-01 20 56138777 56138777 G A PCK1 Missense_Mutation p.A319T 0.14 tolerated(0.09) benign(0.002) TCGA-BR-4184-01 20 57276144 57276144 C T NPEPL1 Missense_Mutation p.A251V 0.23 deleterious(0) possibly_damaging(0.714) TCGA-BR-4184-01 20 57415849 57415849 T A RP4-806M20.3 5'Flank 0.24 TCGA-BR-4184-01 20 57485765 57485765 C T GNAS Missense_Mutation p.R999C 0.18 deleterious(0) probably_damaging(0.996) TCGA-BR-4184-01 20 57568154 57568154 C T NELFCD Missense_Mutation p.A462V 0.09 tolerated(0.33) benign(0.018) TCGA-BR-4184-01 20 57599575 57599575 G A TUBB1 Missense_Mutation p.A365T 0.12 deleterious_low_confidence(0.02) probably_damaging(0.997) TCGA-BR-4184-01 20 57768478 57768478 G A ZNF831 Missense_Mutation p.A802T 0.15 tolerated(0.25) benign(0.05) TCGA-BR-4184-01 20 58349436 58349436 C T PHACTR3 Silent p.A355A 0.18 TCGA-BR-4184-01 20 58467173 58467173 A G SYCP2 Missense_Mutation p.S746P 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-BR-4184-01 20 58562546 58562546 C T CDH26 Silent p.G292G 0.18 TCGA-BR-4184-01 20 58564055 58564055 C T CDH26 Missense_Mutation p.P374S 0.11 tolerated(0.99) benign(0.102) TCGA-BR-4184-01 20 6021618 6021618 T - LRRN4 3'UTR 0.15 TCGA-BR-4184-01 20 60699742 60699742 A G LSM14B Missense_Mutation p.Y66C 0.22 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 20 60704997 60704997 A G LSM14B Missense_Mutation p.K195R 0.19 tolerated(0.99) benign(0.004) TCGA-BR-4184-01 20 60714232 60714232 G A PSMA7 Missense_Mutation p.R124C 0.15 tolerated(0.09) benign(0.265) TCGA-BR-4184-01 20 60881358 60881358 G A ADRM1 Missense_Mutation p.E146K 0.14 tolerated(0.15) possibly_damaging(0.513) TCGA-BR-4184-01 20 60883823 60883823 G A ADRM1 3'UTR 0.32 TCGA-BR-4184-01 20 60966415 60966415 G A CABLES2 Nonsense_Mutation p.Q396* 0.19 TCGA-BR-4184-01 20 61297900 61297900 C T SLCO4A1 Missense_Mutation p.A482V 0.13 deleterious(0.01) possibly_damaging(0.665) TCGA-BR-4184-01 20 61538508 61538508 G A DIDO1 Silent p.C455C 0.19 TCGA-BR-4184-01 20 61593988 61593988 C T SLC17A9 Silent p.T170T 0.18 TCGA-BR-4184-01 20 61833667 61833667 C T YTHDF1 Missense_Mutation p.R542H 0.17 deleterious(0) probably_damaging(0.996) TCGA-BR-4184-01 20 61981756 61981756 C T CHRNA4 Missense_Mutation p.R336H 0.16 tolerated(0.08) benign(0.104) TCGA-BR-4184-01 20 62162144 62162144 G A PTK6 Silent p.N323N 0.18 TCGA-BR-4184-01 20 62174716 62174716 G A SRMS Missense_Mutation p.A199V 0.15 tolerated(0.34) benign(0.004) TCGA-BR-4184-01 20 62198324 62198324 G A HELZ2 Missense_Mutation p.A796V 0.11 tolerated(0.44) benign(0.118) TCGA-BR-4184-01 20 62319289 62319289 G A RTEL1 Splice_Site p.X518_splice 0.14 TCGA-BR-4184-01 20 62366007 62366007 G A ZGPAT Silent p.S294S 0.09 TCGA-BR-4184-01 20 62560765 62560765 G A DNAJC5 Missense_Mutation p.A70T 0.21 tolerated(0.48) benign(0.009) TCGA-BR-4184-01 20 62560817 62560817 C T DNAJC5 Missense_Mutation p.A87V 0.19 deleterious(0.03) probably_damaging(0.963) TCGA-BR-4184-01 20 62680254 62680254 C T SOX18 Silent p.R140R 0.50 TCGA-BR-4184-01 20 62680575 62680575 C T SOX18 Missense_Mutation p.E99K 0.12 deleterious(0) benign(0.031) TCGA-BR-4184-01 20 62703233 62703233 G A TCEA2 Missense_Mutation p.R277H 0.20 deleterious(0) benign(0.365) TCGA-BR-4184-01 20 62839458 62839458 G A MYT1 Silent p.E303E 0.19 TCGA-BR-4184-01 20 62850293 62850293 G A MYT1 Missense_Mutation p.A626T 0.20 probably_damaging(0.928) TCGA-BR-4184-01 20 745857 745857 C T SLC52A3 Missense_Mutation p.A188T 0.11 tolerated(0.95) benign(0) TCGA-BR-4184-01 20 9360803 9360803 A G PLCB4 Missense_Mutation p.K283E 0.07 tolerated(0.38) benign(0.004) TCGA-BR-4184-01 20 9546783 9546783 C T PAK7 Silent p.P413P 0.20 TCGA-BR-4184-01 21 10934961 10934961 G T TPTE Missense_Mutation p.H278N 0.08 deleterious(0) possibly_damaging(0.665) TCGA-BR-4184-01 21 11049593 11049593 G A BAGE2 RNA 0.06 TCGA-BR-4184-01 21 14982927 14982927 C T POTED Silent p.S126S 0.11 TCGA-BR-4184-01 21 15561632 15561632 T C LIPI Missense_Mutation p.N73S 0.10 deleterious(0.01) possibly_damaging(0.805) TCGA-BR-4184-01 21 19713822 19713822 G A TMPRSS15 Missense_Mutation p.A491V 0.33 deleterious(0) probably_damaging(0.993) TCGA-BR-4184-01 21 28296541 28296541 G A ADAMTS5 Missense_Mutation p.S875L 0.32 tolerated(0.41) benign(0.013) TCGA-BR-4184-01 21 30532270 30532270 G A MAP3K7CL Silent p.P147P 0.09 TCGA-BR-4184-01 21 31654991 31654991 T C KRTAP24-1 Missense_Mutation p.D87G 0.12 deleterious(0.04) probably_damaging(0.945) TCGA-BR-4184-01 21 31744549 31744549 G A KRTAP13-2 5'UTR 0.09 TCGA-BR-4184-01 21 31768922 31768922 G T KRTAP13-1 Nonstop_Mutation p.*173Lext*4 0.40 TCGA-BR-4184-01 21 31864073 31864073 C T KRTAP19-3 Missense_Mutation p.R68H 0.34 tolerated_low_confidence(0.39) unknown(0) TCGA-BR-4184-01 21 32526578 32526578 C T TIAM1 Missense_Mutation p.R1053H 0.41 deleterious(0) probably_damaging(0.949) TCGA-BR-4184-01 21 33746004 33746004 C T URB1 Silent p.S276S 0.56 TCGA-BR-4184-01 21 34640721 34640721 C T AP000295.9 Silent p.P152P 0.42 TCGA-BR-4184-01 21 37603096 37603096 G A DOPEY2 Missense_Mutation p.A672T 0.36 tolerated(0.36) benign(0.003) TCGA-BR-4184-01 21 38510956 38510956 A T TTC3 Missense_Mutation p.N534I 0.08 deleterious(0) probably_damaging(0.993) TCGA-BR-4184-01 21 38572580 38572580 A - TTC3 Frame_Shift_Del p.N1968Tfs*35 0.34 TCGA-BR-4184-01 21 38884778 38884778 G T DYRK1A Nonsense_Mutation p.E746* 0.16 TCGA-BR-4184-01 21 40795389 40795389 T - LCA5L Frame_Shift_Del p.K117Sfs*15 0.13 TCGA-BR-4184-01 21 45194175 45194175 C T CSTB Missense_Mutation p.V69M 0.41 deleterious(0.01) probably_damaging(0.98) TCGA-BR-4184-01 21 45401010 45401010 C T AGPAT3 Silent p.G328G 0.15 TCGA-BR-4184-01 21 45479056 45479056 G A TRAPPC10 Missense_Mutation p.A251T 0.37 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 21 45534069 45534069 C T PWP2 Missense_Mutation p.A79V 0.40 deleterious(0.01) possibly_damaging(0.817) TCGA-BR-4184-01 21 45738404 45738404 G A PFKL Missense_Mutation p.D330N 0.27 tolerated(0.16) benign(0) TCGA-BR-4184-01 21 45741708 45741708 C T PFKL Missense_Mutation p.H430Y 0.36 tolerated(0.12) probably_damaging(0.963) TCGA-BR-4184-01 21 45743770 45743770 G A PFKL Missense_Mutation p.G540D 0.25 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 21 46047615 46047615 C - KRTAP10-9 Frame_Shift_Del p.C178Afs*203 0.32 TCGA-BR-4184-01 21 46687543 46687543 G A POFUT2 Silent p.G366G 0.40 TCGA-BR-4184-01 21 46705800 46705800 G A POFUT2 Missense_Mutation p.R59C 0.13 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 21 47545767 47545767 C T COL6A2 Missense_Mutation p.R680C 0.32 deleterious(0) probably_damaging(0.998) TCGA-BR-4184-01 21 47665034 47665034 G A MCM3AP Silent p.Y1575Y 0.16 TCGA-BR-4184-01 21 47671503 47671503 C T MCM3AP Silent p.S1410S 0.10 TCGA-BR-4184-01 21 47832880 47832880 C T PCNT Missense_Mutation p.R2042C 0.30 benign(0) TCGA-BR-4184-01 21 47976004 47976004 G T DIP2A Missense_Mutation p.K1166N 0.29 tolerated(0.08) possibly_damaging(0.75) TCGA-BR-4184-01 21 47978163 47978163 C T DIP2A Missense_Mutation p.R1276C 0.46 deleterious(0) benign(0.001) TCGA-BR-4184-01 21 47986475 47986475 C T DIP2A Missense_Mutation p.R1448W 0.34 deleterious(0.03) possibly_damaging(0.826) TCGA-BR-4184-01 22 16287484 16287485 - T POTEH Frame_Shift_Ins p.M135Dfs*54 0.11 TCGA-BR-4184-01 22 17119563 17119563 C T TPTEP1 RNA 0.29 TCGA-BR-4184-01 22 17488874 17488874 C T GAB4 Missense_Mutation p.G44D 0.40 deleterious(0) probably_damaging(0.982) TCGA-BR-4184-01 22 17618867 17618867 G A CECR5 3'UTR 0.36 TCGA-BR-4184-01 22 18368675 18368675 G A MICAL3 Missense_Mutation p.A737V 0.22 possibly_damaging(0.664) TCGA-BR-4184-01 22 18604435 18604435 G A TUBA8 Missense_Mutation p.A65T 0.35 tolerated_low_confidence(0.08) benign(0.173) TCGA-BR-4184-01 22 19127471 19127471 G A DGCR14 Missense_Mutation p.T156M 0.22 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 22 19346867 19346867 C T HIRA Silent p.A742A 0.29 TCGA-BR-4184-01 22 20073913 20073913 G A DGCR8 Missense_Mutation p.D143N 0.09 deleterious_low_confidence(0.05) benign(0.049) TCGA-BR-4184-01 22 20128442 20128442 G A ZDHHC8 Silent p.P267P 0.29 TCGA-BR-4184-01 22 20759892 20759892 G A ZNF74 Missense_Mutation p.R190H 0.35 tolerated(0.11) benign(0.107) TCGA-BR-4184-01 22 21062348 21062348 T C PI4KA Missense_Mutation p.D2099G 0.09 deleterious(0.01) benign(0.002) TCGA-BR-4184-01 22 21134082 21134082 C T SERPIND1 Missense_Mutation p.A161V 0.26 deleterious(0.04) probably_damaging(0.943) TCGA-BR-4184-01 22 21172812 21172812 G - PI4KA Frame_Shift_Del p.P272Lfs*24 0.20 TCGA-BR-4184-01 22 21363384 21363384 G A AC002472.1 5'Flank 0.22 TCGA-BR-4184-01 22 21385306 21385306 G A SLC7A4 Missense_Mutation p.R266W 0.33 deleterious(0.02) benign(0.159) TCGA-BR-4184-01 22 21799218 21799218 G A HIC2 Missense_Mutation p.A12T 0.12 tolerated_low_confidence(0.08) possibly_damaging(0.499) TCGA-BR-4184-01 22 21800560 21800560 C T HIC2 Missense_Mutation p.A459V 0.09 deleterious(0.02) probably_damaging(0.923) TCGA-BR-4184-01 22 22065094 22065094 G A YPEL1 5'UTR 0.16 TCGA-BR-4184-01 22 23494702 23494702 C T RAB36 Silent p.S138S 0.11 TCGA-BR-4184-01 22 23915549 23915549 C T IGLL1 Silent p.T182T 0.35 TCGA-BR-4184-01 22 23974150 23974150 C T C22orf43 Missense_Mutation p.A21T 0.21 tolerated_low_confidence(0.08) probably_damaging(0.99) TCGA-BR-4184-01 22 24175857 24175859 AGA - SMARCB1 In_Frame_Del p.K364del 0.39 TCGA-BR-4184-01 22 24567727 24567727 G A CABIN1 Missense_Mutation p.R1935Q 0.27 deleterious_low_confidence(0.01) probably_damaging(0.99) TCGA-BR-4184-01 22 24580172 24580172 G A SUSD2 Missense_Mutation p.G170S 0.17 deleterious(0.03) possibly_damaging(0.568) TCGA-BR-4184-01 22 24718805 24718806 AG - SPECC1L Frame_Shift_Del p.E620Dfs*4 0.25 TCGA-BR-4184-01 22 24891360 24891360 C T UPB1 5'UTR 0.16 TCGA-BR-4184-01 22 26110386 26110386 C T ADRBK2 Silent p.C501C 0.22 TCGA-BR-4184-01 22 26157081 26157081 G A MYO18B Missense_Mutation p.A8T 0.16 deleterious(0) probably_damaging(0.927) TCGA-BR-4184-01 22 26173737 26173737 G A MYO18B Missense_Mutation p.G686D 0.17 deleterious(0.03) possibly_damaging(0.477) TCGA-BR-4184-01 22 26688919 26688919 A G SEZ6L Silent p.T214T 0.40 TCGA-BR-4184-01 22 26839084 26839084 G A ASPHD2 Missense_Mutation p.R341Q 0.22 deleterious(0.03) probably_damaging(0.998) TCGA-BR-4184-01 22 26890122 26890122 G A TFIP11 Missense_Mutation p.A714V 0.29 tolerated(0.06) benign(0.204) TCGA-BR-4184-01 22 26937372 26937372 G A TPST2 Silent p.G75G 0.23 TCGA-BR-4184-01 22 29745285 29745285 G A AP1B1 Silent p.G453G 0.30 TCGA-BR-4184-01 22 30125542 30125542 G A CABP7 Missense_Mutation p.R211H 0.24 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BR-4184-01 22 30221725 30221725 C T ASCC2 Silent p.P42P 0.09 TCGA-BR-4184-01 22 30730631 30730631 G A SF3A1 Silent p.G778G 0.23 TCGA-BR-4184-01 22 30734847 30734847 C T SF3A1 Silent p.P558P 0.10 TCGA-BR-4184-01 22 31484712 31484712 C T SMTN Missense_Mutation p.R108C 0.38 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 22 31523363 31523363 C T INPP5J Silent p.S176S 0.14 TCGA-BR-4184-01 22 31533804 31533804 G A PLA2G3 Missense_Mutation p.R320C 0.20 tolerated(0.07) benign(0.28) TCGA-BR-4184-01 22 31854475 31854475 G A EIF4ENIF1 Missense_Mutation p.P317S 0.09 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 22 32650199 32650199 G A SLC5A4 Missense_Mutation p.A46V 0.28 deleterious(0.04) possibly_damaging(0.856) TCGA-BR-4184-01 22 35802622 35802622 G A MCM5 Missense_Mutation p.R167H 0.17 tolerated(0.37) benign(0.002) TCGA-BR-4184-01 22 35947713 35947713 C T RASD2 Silent p.G145G 0.27 TCGA-BR-4184-01 22 36055294 36055294 C T APOL6 Missense_Mutation p.A228V 0.07 tolerated(0.96) benign(0.136) TCGA-BR-4184-01 22 37471264 37471264 G T TMPRSS6 Missense_Mutation p.T427K 0.27 tolerated(0.15) benign(0.116) TCGA-BR-4184-01 22 37603530 37603530 C T SSTR3 Missense_Mutation p.A105T 0.26 tolerated(0.08) possibly_damaging(0.784) TCGA-BR-4184-01 22 38119860 38119860 G A TRIOBP Missense_Mutation p.A433T 0.24 tolerated_low_confidence(0.91) benign(0) TCGA-BR-4184-01 22 38934370 38934370 G A DMC1 Silent p.G235G 0.20 TCGA-BR-4184-01 22 39148607 39148607 C T SUN2 Silent p.T9T 0.29 TCGA-BR-4184-01 22 39418941 39418941 C T APOBEC3D Silent p.G44G 0.15 TCGA-BR-4184-01 22 39482482 39482482 G A APOBEC3G Missense_Mutation p.A312T 0.27 deleterious(0) possibly_damaging(0.637) TCGA-BR-4184-01 22 39811575 39811575 G T TAB1 Missense_Mutation p.A81S 0.31 tolerated(0.4) benign(0.086) TCGA-BR-4184-01 22 39883366 39883366 G A MGAT3 Missense_Mutation p.R5H 0.07 deleterious_low_confidence(0) probably_damaging(0.939) TCGA-BR-4184-01 22 40056386 40056386 G A CACNA1I Missense_Mutation p.S881N 0.34 deleterious(0.04) benign(0.213) TCGA-BR-4184-01 22 40365422 40365422 G T GRAP2 Missense_Mutation p.R233L 0.10 tolerated(0.31) benign(0.296) TCGA-BR-4184-01 22 41489028 41489028 A G EP300 Missense_Mutation p.E7G 0.08 unknown(0) TCGA-BR-4184-01 22 41574331 41574331 G T EP300 Missense_Mutation p.A2206S 0.19 benign(0.145) TCGA-BR-4184-01 22 41648913 41648913 C T RANGAP1 Missense_Mutation p.R448H 0.28 tolerated(0.21) benign(0.005) TCGA-BR-4184-01 22 41676993 41676993 G A RANGAP1 Missense_Mutation p.A19V 0.30 tolerated(0.09) benign(0.004) TCGA-BR-4184-01 22 41863526 41863526 G A PHF5A Missense_Mutation p.R57C 0.14 deleterious(0) probably_damaging(0.971) TCGA-BR-4184-01 22 42523459 42523459 C T CYP2D6 Missense_Mutation p.R388H 0.12 tolerated(0.54) benign(0.001) TCGA-BR-4184-01 22 42609903 42609903 A G TCF20 Missense_Mutation p.V470A 0.22 probably_damaging(0.992) TCGA-BR-4184-01 22 42610103 42610103 C T TCF20 Silent p.V403V 0.23 TCGA-BR-4184-01 22 43267373 43267373 G A PACSIN2 Missense_Mutation p.A484V 0.17 tolerated(0.49) benign(0.139) TCGA-BR-4184-01 22 43634953 43634953 G A SCUBE1 Silent p.C245C 0.11 TCGA-BR-4184-01 22 44543773 44543773 G A PARVB Missense_Mutation p.A282T 0.23 deleterious(0.02) possibly_damaging(0.696) TCGA-BR-4184-01 22 45279115 45279115 G A PHF21B Missense_Mutation p.R483W 0.23 deleterious(0) probably_damaging(0.991) TCGA-BR-4184-01 22 45608113 45608113 C T KIAA0930 Intron 0.12 TCGA-BR-4184-01 22 45726536 45726536 G A FAM118A Missense_Mutation p.G192D 0.25 deleterious(0) probably_damaging(0.973) TCGA-BR-4184-01 22 45813802 45813802 G A RIBC2 Missense_Mutation p.A173T 0.28 deleterious(0.03) possibly_damaging(0.871) TCGA-BR-4184-01 22 45938087 45938087 C T FBLN1 Silent p.C373C 0.36 TCGA-BR-4184-01 22 45959163 45959163 G A FBLN1 Intron 0.19 TCGA-BR-4184-01 22 46655302 46655302 C T PKDREJ Silent p.S1306S 0.31 TCGA-BR-4184-01 22 46658466 46658466 C T PKDREJ Missense_Mutation p.A252T 0.40 tolerated(0.36) benign(0.086) TCGA-BR-4184-01 22 46712231 46712231 C T GTSE1 Nonsense_Mutation p.R452* 0.07 TCGA-BR-4184-01 22 47070572 47070572 G A GRAMD4 Missense_Mutation p.R468H 0.19 tolerated(0.07) probably_damaging(1) TCGA-BR-4184-01 22 47290699 47290699 G A TBC1D22A Missense_Mutation p.R286H 0.09 deleterious(0) probably_damaging(0.92) TCGA-BR-4184-01 22 47569246 47569246 G A TBC1D22A Missense_Mutation p.A511T 0.21 deleterious(0) probably_damaging(0.998) TCGA-BR-4184-01 22 49103572 49103572 T C FAM19A5 Silent p.C102C 0.19 TCGA-BR-4184-01 22 50277562 50277562 C T ZBED4 Silent p.G84G 0.29 TCGA-BR-4184-01 22 50303555 50303555 C - ALG12 Frame_Shift_Del p.I218Sfs*4 0.19 TCGA-BR-4184-01 22 50528897 50528897 G A MOV10L1 Intron 0.36 TCGA-BR-4184-01 22 50636522 50636522 T C TRABD Missense_Mutation p.V288A 0.36 tolerated(0.24) benign(0.309) TCGA-BR-4184-01 22 50647109 50647109 C T SELO Silent p.S301S 0.32 TCGA-BR-4184-01 22 50728515 50728515 C T PLXNB2 Missense_Mutation p.V167M 0.28 tolerated(0.07) benign(0.218) TCGA-BR-4184-01 2 10050891 10050891 G A TAF1B Missense_Mutation p.V328M 0.24 deleterious(0) probably_damaging(0.986) TCGA-BR-4184-01 2 105713663 105713663 A G MRPS9 Missense_Mutation p.D327G 0.08 deleterious(0) probably_damaging(0.984) TCGA-BR-4184-01 2 10581770 10581770 C T ODC1 Missense_Mutation p.R369H 0.33 tolerated(0.35) benign(0.001) TCGA-BR-4184-01 2 105858977 105858977 C T GPR45 Missense_Mutation p.T221M 0.33 deleterious(0) probably_damaging(0.932) TCGA-BR-4184-01 2 106498353 106498353 G A NCK2 Missense_Mutation p.A266T 0.09 tolerated(0.63) benign(0.001) TCGA-BR-4184-01 2 107460198 107460198 G A ST6GAL2 Missense_Mutation p.A79V 0.28 benign(0.001) TCGA-BR-4184-01 2 108455331 108455331 A G RGPD4 Missense_Mutation p.K106E 0.30 tolerated(0.45) benign(0.011) TCGA-BR-4184-01 2 108618435 108618435 C T SLC5A7 Missense_Mutation p.P227L 0.15 tolerated(0.06) benign(0.105) TCGA-BR-4184-01 2 109382686 109382686 A G RANBP2 Silent p.G1897G 0.07 TCGA-BR-4184-01 2 11053250 11053250 T C KCNF1 Missense_Mutation p.F233S 0.21 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 2 11053818 11053818 G A KCNF1 Silent p.A422A 0.29 TCGA-BR-4184-01 2 110927445 110927445 C T NPHP1 Missense_Mutation p.G154S 0.31 tolerated(0.8) benign(0.001) TCGA-BR-4184-01 2 113331267 113331267 C T POLR1B Silent p.D800D 0.28 TCGA-BR-4184-01 2 113414818 113414818 C T SLC20A1 Nonsense_Mutation p.R260* 0.23 TCGA-BR-4184-01 2 113510001 113510001 G T CKAP2L Missense_Mutation p.P482H 0.12 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 2 113520091 113520091 G A CKAP2L Silent p.S31S 0.17 TCGA-BR-4184-01 2 11389837 11389837 A - ROCK2 Frame_Shift_Del p.W138Gfs*31 0.22 TCGA-BR-4184-01 2 116572398 116572398 C T DPP10 Missense_Mutation p.T581I 0.25 deleterious(0) possibly_damaging(0.495) TCGA-BR-4184-01 2 118577236 118577236 G A DDX18 Missense_Mutation p.A128T 0.24 tolerated(0.21) benign(0.003) TCGA-BR-4184-01 2 118732839 118732839 C T CCDC93 Silent p.T225T 0.33 TCGA-BR-4184-01 2 11924028 11924028 G A LPIN1 Silent p.A495A 0.24 TCGA-BR-4184-01 2 120005382 120005382 G A STEAP3 Missense_Mutation p.R217H 0.16 tolerated(0.18) benign(0.006) TCGA-BR-4184-01 2 120005645 120005645 C T STEAP3 Silent p.L305L 0.22 TCGA-BR-4184-01 2 120438980 120438980 G A TMEM177 Missense_Mutation p.G184D 0.29 deleterious(0.01) benign(0.367) TCGA-BR-4184-01 2 120677773 120677773 T - PTPN4 Frame_Shift_Del p.F321Lfs*7 0.22 TCGA-BR-4184-01 2 120918486 120918487 - C EPB41L5 Frame_Shift_Ins p.K610Qfs*5 0.23 TCGA-BR-4184-01 2 122485323 122485323 T - NIFK Frame_Shift_Del p.R287Dfs*23 0.28 TCGA-BR-4184-01 2 122485487 122485487 C T NIFK Missense_Mutation p.G232D 0.38 tolerated(0.77) benign(0.107) TCGA-BR-4184-01 2 124783106 124783106 G T CNTNAP5 5'UTR 0.30 TCGA-BR-4184-01 2 128252502 128252502 T - IWS1 Frame_Shift_Del p.K582Sfs*4 0.16 TCGA-BR-4184-01 2 128339927 128339927 G A MYO7B Missense_Mutation p.A417T 0.22 tolerated(0.1) benign(0.026) TCGA-BR-4184-01 2 128408489 128408489 C T GPR17 Silent p.H88H 0.13 TCGA-BR-4184-01 2 128471545 128471545 G A WDR33 Missense_Mutation p.R974W 0.33 deleterious_low_confidence(0) possibly_damaging(0.853) TCGA-BR-4184-01 2 130738474 130738474 A - RAB6C 3'UTR 0.22 TCGA-BR-4184-01 2 130911288 130911288 C T SMPD4 Missense_Mutation p.R666H 0.20 tolerated(0.11) benign(0.021) TCGA-BR-4184-01 2 130949603 130949603 G A TUBA3E Missense_Mutation p.A385V 0.10 tolerated_low_confidence(0.1) benign(0.098) TCGA-BR-4184-01 2 131976329 131976329 C T POTEE Silent p.G118G 0.20 TCGA-BR-4184-01 2 131976349 131976349 A G POTEE Missense_Mutation p.D125G 0.07 deleterious_low_confidence(0) possibly_damaging(0.539) TCGA-BR-4184-01 2 133887575 133887575 G A NCKAP5 Missense_Mutation p.R106C 0.31 deleterious(0.04) possibly_damaging(0.897) TCGA-BR-4184-01 2 134060653 134060653 C A NCKAP5 Missense_Mutation p.E33D 0.24 tolerated(0.19) benign(0.083) TCGA-BR-4184-01 2 135185968 135185968 C T MGAT5 Silent p.C609C 0.17 TCGA-BR-4184-01 2 135630090 135630090 G A ACMSD Missense_Mutation p.R243H 0.20 deleterious(0.04) probably_damaging(0.996) TCGA-BR-4184-01 2 136473231 136473231 C T R3HDM1 Missense_Mutation p.P915S 0.22 tolerated(0.44) benign(0.001) TCGA-BR-4184-01 2 136513161 136513161 G A UBXN4 Silent p.A136A 0.33 TCGA-BR-4184-01 2 136558281 136558281 C T LCT Missense_Mutation p.A1588T 0.32 tolerated(0.13) benign(0.082) TCGA-BR-4184-01 2 136567187 136567187 G A LCT Silent p.G910G 0.10 TCGA-BR-4184-01 2 137928508 137928508 G A THSD7B Missense_Mutation p.G575R 0.16 deleterious(0.01) probably_damaging(0.923) TCGA-BR-4184-01 2 138762705 138762705 C T HNMT Silent p.L145L 0.24 TCGA-BR-4184-01 2 141259398 141259398 C T LRP1B Missense_Mutation p.C2903Y 0.20 possibly_damaging(0.712) TCGA-BR-4184-01 2 141294197 141294197 C T LRP1B Missense_Mutation p.G2532D 0.19 probably_damaging(0.982) TCGA-BR-4184-01 2 144765058 144765058 C T GTDC1 Missense_Mutation p.G189D 0.18 tolerated_low_confidence(0.47) benign(0.005) TCGA-BR-4184-01 2 149270531 149270531 C T MBD5 3'UTR 0.23 TCGA-BR-4184-01 2 1497645 1497645 G A TPO Missense_Mutation p.A614T 0.21 tolerated(0.56) benign(0.053) TCGA-BR-4184-01 2 149853828 149853828 C T KIF5C Missense_Mutation p.R692W 0.23 deleterious(0.02) possibly_damaging(0.676) TCGA-BR-4184-01 2 1507808 1507808 C T TPO Silent p.C825C 0.22 TCGA-BR-4184-01 2 152536281 152536281 G A NEB Missense_Mutation p.A1070V 0.21 probably_damaging(0.99) TCGA-BR-4184-01 2 152567047 152567047 T - NEB Frame_Shift_Del p.K276Nfs*27 0.22 TCGA-BR-4184-01 2 152580820 152580820 G A NEB Missense_Mutation p.A189V 0.23 probably_damaging(1) TCGA-BR-4184-01 2 152663340 152663340 G A ARL5A Silent p.G162G 0.09 TCGA-BR-4184-01 2 15696925 15696925 C T NBAS Missense_Mutation p.R64H 0.18 tolerated(0.57) benign(0.277) TCGA-BR-4184-01 2 159477502 159477502 A G PKP4 Missense_Mutation p.D94G 0.06 tolerated(0.1) benign(0.066) TCGA-BR-4184-01 2 159517990 159517990 C T PKP4 Intron 0.16 TCGA-BR-4184-01 2 159526422 159526422 C T PKP4 Silent p.G973G 0.32 TCGA-BR-4184-01 2 160304907 160304907 C T BAZ2B Nonsense_Mutation p.W116* 0.06 TCGA-BR-4184-01 2 160605008 160605008 C T MARCH7 Nonsense_Mutation p.R403* 0.21 TCGA-BR-4184-01 2 160806194 160806195 - A PLA2R1 Frame_Shift_Ins p.A1212Cfs*9 0.26 TCGA-BR-4184-01 2 160832609 160832609 C T PLA2R1 Silent p.E855E 0.27 TCGA-BR-4184-01 2 1652167 1652167 G A PXDN Missense_Mutation p.R1129C 0.18 deleterious(0) probably_damaging(0.993) TCGA-BR-4184-01 2 165353759 165353759 C A GRB14 Missense_Mutation p.S419I 0.22 deleterious(0) possibly_damaging(0.478) TCGA-BR-4184-01 2 165548787 165548787 G A COBLL1 Nonsense_Mutation p.R1120* 0.16 TCGA-BR-4184-01 2 165550894 165550894 C T COBLL1 Missense_Mutation p.R1041H 0.22 tolerated(0.16) benign(0.014) TCGA-BR-4184-01 2 165946823 165946823 T C SCN3A Missense_Mutation p.D1947G 0.29 tolerated(0.35) benign(0.197) TCGA-BR-4184-01 2 165997321 165997321 C T SCN3A Missense_Mutation p.R620Q 0.37 tolerated(0.07) probably_damaging(0.997) TCGA-BR-4184-01 2 166152416 166152416 G A SCN2A Missense_Mutation p.R28H 0.19 deleterious(0.01) benign(0.039) TCGA-BR-4184-01 2 166246006 166246006 C T SCN2A Missense_Mutation p.T1897M 0.21 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 2 166514297 166514297 C T CSRNP3 Nonsense_Mutation p.R59* 0.08 TCGA-BR-4184-01 2 166797676 166797676 G A TTC21B Missense_Mutation p.R191C 0.27 deleterious(0) possibly_damaging(0.876) TCGA-BR-4184-01 2 166900484 166900484 G A SCN1A Nonsense_Mutation p.R580* 0.22 TCGA-BR-4184-01 2 167133677 167133677 C T SCN9A Missense_Mutation p.C886Y 0.25 deleterious(0.05) probably_damaging(1) TCGA-BR-4184-01 2 167133746 167133746 G A SCN9A Missense_Mutation p.A863V 0.08 deleterious(0.05) possibly_damaging(0.861) TCGA-BR-4184-01 2 167298020 167298020 C G SCN7A Silent p.V681V 0.26 TCGA-BR-4184-01 2 168107993 168107993 T C XIRP2 Missense_Mutation p.I3364T 0.25 benign(0.234) TCGA-BR-4184-01 2 169404125 169404125 G A CERS6 Missense_Mutation p.A64T 0.32 deleterious(0.02) probably_damaging(0.995) TCGA-BR-4184-01 2 170026232 170026232 G A LRP2 Missense_Mutation p.A3826V 0.20 benign(0.014) TCGA-BR-4184-01 2 170032999 170032999 C T LRP2 Missense_Mutation p.R3498H 0.23 benign(0.002) TCGA-BR-4184-01 2 170037982 170037982 G A LRP2 Missense_Mutation p.A3382V 0.24 possibly_damaging(0.728) TCGA-BR-4184-01 2 170048452 170048452 G A LRP2 Silent p.G2974G 0.25 TCGA-BR-4184-01 2 170058336 170058336 G A LRP2 Nonsense_Mutation p.R2752* 0.14 TCGA-BR-4184-01 2 170129448 170129448 C T LRP2 Missense_Mutation p.R702H 0.30 benign(0.02) TCGA-BR-4184-01 2 170344508 170344508 C T BBS5 Silent p.G90G 0.27 TCGA-BR-4184-01 2 171264268 171264268 C A MYO3B Missense_Mutation p.T855N 0.27 tolerated(0.13) possibly_damaging(0.688) TCGA-BR-4184-01 2 172641950 172641950 C T SLC25A12 Missense_Mutation p.R624H 0.24 tolerated(0.27) benign(0.008) TCGA-BR-4184-01 2 172966308 172966308 C T DLX2 Missense_Mutation p.R156H 0.28 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 2 173429383 173429383 G A PDK1 Missense_Mutation p.R188H 0.20 deleterious(0.02) benign(0.178) TCGA-BR-4184-01 2 176794704 176794704 C T KIAA1715 Silent p.T426T 0.16 TCGA-BR-4184-01 2 176958345 176958345 T C HOXD13 Missense_Mutation p.Y243H 0.19 deleterious(0) benign(0.367) TCGA-BR-4184-01 2 176982113 176982113 C T HOXD10 Silent p.G184G 0.31 TCGA-BR-4184-01 2 177036882 177036882 G A HOXD3 Silent p.A393A 0.27 TCGA-BR-4184-01 2 178481375 178481375 A - TTC30A 3'UTR 0.30 TCGA-BR-4184-01 2 178936644 178936644 G A PDE11A Missense_Mutation p.A174V 0.26 tolerated(0.45) possibly_damaging(0.75) TCGA-BR-4184-01 2 179214085 179214085 G A OSBPL6 Silent p.L399L 0.22 TCGA-BR-4184-01 2 179325727 179325727 T C DFNB59 Missense_Mutation p.V262A 0.07 tolerated(0.5) benign(0) TCGA-BR-4184-01 2 179393094 179393094 G A TTN Nonsense_Mutation p.R35762* 0.41 TCGA-BR-4184-01 2 179404438 179404438 G A TTN Missense_Mutation p.A32785V 0.09 TCGA-BR-4184-01 2 179412259 179412259 C T TTN Missense_Mutation p.R31365H 0.34 TCGA-BR-4184-01 2 179417232 179417232 T C TTN Missense_Mutation p.D30132G 0.25 TCGA-BR-4184-01 2 179417976 179417976 G A TTN Missense_Mutation p.A29884V 0.30 TCGA-BR-4184-01 2 179422671 179422671 C A TTN Missense_Mutation p.R29137M 0.26 TCGA-BR-4184-01 2 179444834 179444834 G A TTN Missense_Mutation p.R22394C 0.23 TCGA-BR-4184-01 2 179450022 179450022 T - TTN Frame_Shift_Del p.K21483Nfs*42 0.19 TCGA-BR-4184-01 2 179498195 179498195 G A TTN Silent p.G14297G 0.21 TCGA-BR-4184-01 2 179530112 179530112 C T TTN Missense_Mutation p.R12012H 0.08 TCGA-BR-4184-01 2 179549074 179549074 G A TTN Missense_Mutation p.A10902V 0.23 TCGA-BR-4184-01 2 179582535 179582535 G A TTN Missense_Mutation p.R8356C 0.25 TCGA-BR-4184-01 2 179597674 179597674 C T TTN Missense_Mutation p.G5410D 0.33 TCGA-BR-4184-01 2 179604723 179604723 C A TTN Missense_Mutation p.G4413C 0.22 TCGA-BR-4184-01 2 179648990 179648990 G A TTN Missense_Mutation p.A861V 0.28 TCGA-BR-4184-01 2 179666955 179666955 C T TTN Missense_Mutation p.A69T 0.34 TCGA-BR-4184-01 2 179720245 179720245 T - CCDC141 Frame_Shift_Del p.V964Lfs*10 0.15 TCGA-BR-4184-01 2 179732869 179732869 C T CCDC141 Missense_Mutation p.A820T 0.24 tolerated(0.33) benign(0.02) TCGA-BR-4184-01 2 179974726 179974726 T C SESTD1 Missense_Mutation p.D664G 0.17 deleterious(0.04) benign(0.24) TCGA-BR-4184-01 2 180047900 180047900 C T SESTD1 Missense_Mutation p.R24Q 0.26 tolerated(0.12) possibly_damaging(0.52) TCGA-BR-4184-01 2 180851449 180851449 C T CWC22 Missense_Mutation p.R60H 0.30 tolerated(0.26) benign(0.002) TCGA-BR-4184-01 2 182542954 182542954 C T NEUROD1 Missense_Mutation p.A212T 0.34 tolerated(0.06) benign(0.044) TCGA-BR-4184-01 2 183730941 183730941 G A FRZB Missense_Mutation p.R114W 0.27 deleterious(0) probably_damaging(0.995) TCGA-BR-4184-01 2 183790402 183790402 C T NCKAP1 3'UTR 0.09 TCGA-BR-4184-01 2 1855433 1855433 G A MYT1L Silent p.G916G 0.22 TCGA-BR-4184-01 2 18764161 18764161 G A NT5C1B Missense_Mutation p.R392W 0.27 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 2 190445148 190445148 G A SLC40A1 Silent p.C13C 0.22 TCGA-BR-4184-01 2 190593148 190593148 T A ANKAR Splice_Site p.X1011_splice 0.10 TCGA-BR-4184-01 2 190660570 190660570 G A PMS1 Missense_Mutation p.A70T 0.08 deleterious(0) probably_damaging(0.953) TCGA-BR-4184-01 2 190682810 190682810 A - PMS1 Frame_Shift_Del p.K164Nfs*6 0.12 TCGA-BR-4184-01 2 19552979 19552979 C T OSR1 Silent p.T196T 0.29 TCGA-BR-4184-01 2 196673563 196673563 C T DNAH7 Missense_Mutation p.G3309D 0.08 deleterious(0.02) probably_damaging(1) TCGA-BR-4184-01 2 197521851 197521851 G A CCDC150 Silent p.S189S 0.10 TCGA-BR-4184-01 2 197763060 197763060 C A PGAP1 Missense_Mutation p.D281Y 0.30 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 2 197987425 197987425 G T ANKRD44 Silent p.A214A 0.11 TCGA-BR-4184-01 2 198950276 198950276 G A PLCL1 Missense_Mutation p.D679N 0.23 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 2 200298074 200298074 C T SATB2 Silent p.A111A 0.26 TCGA-BR-4184-01 2 20113444 20113444 C T WDR35 Missense_Mutation p.V1141I 0.08 tolerated(1) probably_damaging(0.987) TCGA-BR-4184-01 2 201369584 201369584 C T KCTD18 Missense_Mutation p.A87T 0.08 deleterious(0.01) probably_damaging(1) TCGA-BR-4184-01 2 201437568 201437568 A G SGOL2 Silent p.V833V 0.07 TCGA-BR-4184-01 2 201721521 201721521 C T CLK1 Missense_Mutation p.R356H 0.39 deleterious(0.02) benign(0.423) TCGA-BR-4184-01 2 203168133 203168133 A - NOP58 Frame_Shift_Del p.K524Rfs*22 0.25 TCGA-BR-4184-01 2 205986630 205986630 C A PARD3B Silent p.G374G 0.21 TCGA-BR-4184-01 2 206608199 206608199 C T NRP2 Missense_Mutation p.R522C 0.23 deleterious(0) probably_damaging(0.943) TCGA-BR-4184-01 2 207026140 207026140 G A EEF1B2 Missense_Mutation p.A92T 0.29 tolerated(0.09) benign(0.003) TCGA-BR-4184-01 2 207170556 207170556 G A ZDBF2 Missense_Mutation p.R435H 0.18 tolerated(1) benign(0.089) TCGA-BR-4184-01 2 207174487 207174487 T - ZDBF2 Frame_Shift_Del p.F1746Lfs*3 0.09 TCGA-BR-4184-01 2 207175899 207175899 G A ZDBF2 Missense_Mutation p.R2216Q 0.09 tolerated(0.72) benign(0.01) TCGA-BR-4184-01 2 207406814 207406814 C T ADAM23 Silent p.G204G 0.11 TCGA-BR-4184-01 2 207605795 207605795 T - MDH1B Frame_Shift_Del p.N481Ifs*2 0.26 TCGA-BR-4184-01 2 207989028 207989028 G - KLF7 Frame_Shift_Del p.P68Rfs*10 0.19 TCGA-BR-4184-01 2 208605430 208605433 AGTA - CCNYL1 Intron 0.12 TCGA-BR-4184-01 2 209025726 209025726 G A CRYGA Silent p.C109C 0.27 TCGA-BR-4184-01 2 210782542 210782542 G A UNC80 Missense_Mutation p.V1625M 0.38 probably_damaging(0.994) TCGA-BR-4184-01 2 211302452 211302452 C T LANCL1 Missense_Mutation p.A279T 0.36 deleterious(0.02) possibly_damaging(0.47) TCGA-BR-4184-01 2 212522697 212522697 C T ERBB4 Intron 0.13 TCGA-BR-4184-01 2 216269111 216269111 C T FN1 Splice_Site p.X1085_splice 0.20 TCGA-BR-4184-01 2 216298122 216298122 G A FN1 Missense_Mutation p.R114C 0.24 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 2 217024813 217024813 A - XRCC5 Frame_Shift_Del p.K566Nfs*2 0.15 TCGA-BR-4184-01 2 218682847 218682847 C T TNS1 Missense_Mutation p.S1299N 0.25 tolerated(0.59) benign(0.003) TCGA-BR-4184-01 2 218751283 218751283 C T TNS1 Missense_Mutation p.G193D 0.23 deleterious(0) possibly_damaging(0.888) TCGA-BR-4184-01 2 219528910 219528910 C T RNF25 Missense_Mutation p.D384N 0.23 tolerated(0.06) benign(0.04) TCGA-BR-4184-01 2 219892449 219892449 C T CCDC108 Missense_Mutation p.A712T 0.37 tolerated(0.09) possibly_damaging(0.828) TCGA-BR-4184-01 2 219892999 219892999 G - CCDC108 Frame_Shift_Del p.P592Lfs*8 0.22 TCGA-BR-4184-01 2 219895460 219895460 G A CCDC108 Missense_Mutation p.A371V 0.24 deleterious(0.03) probably_damaging(0.913) TCGA-BR-4184-01 2 219920499 219920499 G A IHH Silent p.A222A 0.22 TCGA-BR-4184-01 2 220145307 220145307 C T DNAJB2 Missense_Mutation p.R25C 0.18 deleterious(0) possibly_damaging(0.79) TCGA-BR-4184-01 2 220432875 220432875 C T OBSL1 Missense_Mutation p.R395Q 0.35 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 2 220439700 220439701 - CT INHA Frame_Shift_Ins p.L189Cfs*2 0.19 TCGA-BR-4184-01 2 222301233 222301233 A G EPHA4 Silent p.H744H 0.08 TCGA-BR-4184-01 2 223086020 223086020 C - PAX3 Frame_Shift_Del p.F294Sfs*87 0.23 TCGA-BR-4184-01 2 224463687 224463687 A G SCG2 Missense_Mutation p.L105P 0.30 deleterious(0.02) probably_damaging(1) TCGA-BR-4184-01 2 224758990 224758990 G A WDFY1 Silent p.G264G 0.29 TCGA-BR-4184-01 2 226447052 226447052 G A NYAP2 Missense_Mutation p.A307T 0.29 tolerated(0.48) benign(0.002) TCGA-BR-4184-01 2 227660941 227660941 C T IRS1 Silent p.Q838Q 0.24 TCGA-BR-4184-01 2 227662528 227662528 G A IRS1 Silent p.T309T 0.25 TCGA-BR-4184-01 2 227872065 227872065 G A COL4A4 Silent p.C1683C 0.04 TCGA-BR-4184-01 2 228564079 228564079 C T SLC19A3 Missense_Mutation p.A118T 0.19 deleterious(0) probably_damaging(0.995) TCGA-BR-4184-01 2 228882781 228882781 G A SPHKAP Missense_Mutation p.A930V 0.08 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 2 228883827 228883827 G A SPHKAP Silent p.C581C 0.24 TCGA-BR-4184-01 2 229046326 229046326 G A SPHKAP 5'UTR 0.31 TCGA-BR-4184-01 2 230643195 230643195 C T TRIP12 Missense_Mutation p.R1698H 0.20 deleterious(0) probably_damaging(0.963) TCGA-BR-4184-01 2 230672494 230672494 G A TRIP12 Missense_Mutation p.A761V 0.13 tolerated(0.57) benign(0.079) TCGA-BR-4184-01 2 230910799 230910799 T C SLC16A14 Missense_Mutation p.E348G 0.30 deleterious(0.03) benign(0.024) TCGA-BR-4184-01 2 231033861 231033861 G A SP110 Silent p.G707G 0.25 TCGA-BR-4184-01 2 231037655 231037655 G A SP110 Silent p.C537C 0.37 TCGA-BR-4184-01 2 231740379 231740379 C T ITM2C Silent p.D102D 0.21 TCGA-BR-4184-01 2 231973745 231973745 T - HTR2B Frame_Shift_Del p.K311Sfs*16 0.27 TCGA-BR-4184-01 2 232324987 232324987 C T NCL Missense_Mutation p.A306T 0.24 benign(0.006) TCGA-BR-4184-01 2 232325210 232325210 C T NCL Missense_Mutation p.A293T 0.06 possibly_damaging(0.905) TCGA-BR-4184-01 2 232393472 232393472 C T NMUR1 Missense_Mutation p.R87H 0.19 tolerated(0.07) benign(0.064) TCGA-BR-4184-01 2 232597623 232597623 A - PDE6D 3'UTR 0.19 TCGA-BR-4184-01 2 233128133 233128133 G A DIS3L2 Missense_Mutation p.A548T 0.28 tolerated(0.05) possibly_damaging(0.867) TCGA-BR-4184-01 2 233272672 233272672 G A ALPPL2 Missense_Mutation p.R198H 0.17 tolerated(0.14) benign(0.009) TCGA-BR-4184-01 2 233655446 233655446 C T GIGYF2 Nonsense_Mutation p.R273* 0.22 TCGA-BR-4184-01 2 233744135 233744135 C G NGEF 3'UTR 0.44 TCGA-BR-4184-01 2 234072453 234072453 C T INPP5D Silent p.Y435Y 0.28 TCGA-BR-4184-01 2 234102498 234102498 G A INPP5D Silent p.T817T 0.20 TCGA-BR-4184-01 2 234202917 234202917 C T ATG16L1 Missense_Mutation p.A582V 0.27 tolerated(0.1) benign(0.015) TCGA-BR-4184-01 2 234602262 234602262 T - UGT1A6 Frame_Shift_Del p.S206Pfs*38 0.24 TCGA-BR-4184-01 2 234627977 234627977 T - UGT1A4 Frame_Shift_Del p.W173Gfs*8 0.17 TCGA-BR-4184-01 2 235943670 235943670 G A SH3BP4 Silent p.A8A 0.12 TCGA-BR-4184-01 2 235950141 235950141 G A SH3BP4 Missense_Mutation p.R243H 0.09 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 2 236653360 236653360 G A AGAP1 Missense_Mutation p.A139T 0.18 deleterious(0) probably_damaging(0.997) TCGA-BR-4184-01 2 238244978 238244978 G T COL6A3 Missense_Mutation p.P2922H 0.24 unknown(0) TCGA-BR-4184-01 2 239140913 239140913 C T AC016757.3 5'Flank 0.26 TCGA-BR-4184-01 2 24033274 24033274 T C ATAD2B Missense_Mutation p.H789R 0.26 deleterious(0) possibly_damaging(0.827) TCGA-BR-4184-01 2 24033337 24033337 C T ATAD2B Missense_Mutation p.R768H 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-BR-4184-01 2 240946781 240946781 T - NDUFA10 Frame_Shift_Del p.K252Nfs*19 0.27 TCGA-BR-4184-01 2 240981392 240981392 G A PRR21 Silent p.I336I 0.08 TCGA-BR-4184-01 2 241512589 241512589 C T RNPEPL1 Silent p.G13G 0.29 TCGA-BR-4184-01 2 241516387 241516387 C T RNPEPL1 Missense_Mutation p.R391W 0.32 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 2 241537370 241537370 C T CAPN10 Silent p.C603C 0.33 TCGA-BR-4184-01 2 241569890 241569890 C T GPR35 Missense_Mutation p.A205V 0.23 tolerated(1) benign(0.006) TCGA-BR-4184-01 2 241683367 241683367 G A KIF1A Silent p.D1192D 0.18 TCGA-BR-4184-01 2 242051680 242051680 C T PASK Missense_Mutation p.A1177T 0.16 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 2 242077410 242077410 G A PASK Silent p.I278I 0.42 TCGA-BR-4184-01 2 242078072 242078072 G A PASK Silent p.S246S 0.09 TCGA-BR-4184-01 2 242179074 242179074 G A HDLBP Silent p.G851G 0.19 TCGA-BR-4184-01 2 242375909 242375909 A G FARP2 Missense_Mutation p.T372A 0.07 tolerated(0.79) benign(0.02) TCGA-BR-4184-01 2 242814783 242814783 G A CXXC11 Missense_Mutation p.G359D 0.31 tolerated(0.36) benign(0.007) TCGA-BR-4184-01 2 24484596 24484596 C T ITSN2 Missense_Mutation p.V791I 0.23 tolerated(0.24) unknown(0) TCGA-BR-4184-01 2 25383970 25383970 C T POMC Missense_Mutation p.A262T 0.12 deleterious(0.04) possibly_damaging(0.68) TCGA-BR-4184-01 2 25384011 25384011 G A POMC Missense_Mutation p.T248M 0.26 tolerated(0.06) probably_damaging(0.919) TCGA-BR-4184-01 2 25964880 25964880 T C ASXL2 3'UTR 0.08 TCGA-BR-4184-01 2 26414236 26414236 G A HADHA Silent p.G725G 0.23 TCGA-BR-4184-01 2 26437359 26437359 G A HADHA Nonsense_Mutation p.R291* 0.26 TCGA-BR-4184-01 2 26781400 26781400 G A OTOF Missense_Mutation p.R14W 0.26 deleterious(0) probably_damaging(0.918) TCGA-BR-4184-01 2 27121505 27121505 C T DPYSL5 Silent p.G46G 0.21 TCGA-BR-4184-01 2 272055 272055 G A ACP1 Intron 0.31 TCGA-BR-4184-01 2 27322321 27322321 C T KHK Silent p.G229G 0.09 TCGA-BR-4184-01 2 27354540 27354540 G A PREB Missense_Mutation p.R387W 0.32 deleterious(0.01) possibly_damaging(0.88) TCGA-BR-4184-01 2 27428236 27428236 C T SLC5A6 Missense_Mutation p.G239D 0.16 tolerated(0.1) benign(0.062) TCGA-BR-4184-01 2 27590383 27590383 C T EIF2B4 Missense_Mutation p.A296T 0.35 deleterious(0.01) possibly_damaging(0.875) TCGA-BR-4184-01 2 29016803 29016803 C T PPP1CB Silent p.G273G 0.20 TCGA-BR-4184-01 2 29073279 29073279 A - TRMT61B Intron 0.14 TCGA-BR-4184-01 2 29222106 29222106 C T FAM179A Missense_Mutation p.R67C 0.11 tolerated(0.06) benign(0.001) TCGA-BR-4184-01 2 29404573 29404573 C T CLIP4 Silent p.G644G 0.10 TCGA-BR-4184-01 2 31567583 31567583 T C XDH Missense_Mutation p.D1124G 0.35 tolerated(0.08) benign(0.011) TCGA-BR-4184-01 2 32678971 32678971 T C BIRC6 Missense_Mutation p.S1572P 0.26 probably_damaging(0.986) TCGA-BR-4184-01 2 32750576 32750576 G A BIRC6 Missense_Mutation p.R3934H 0.26 probably_damaging(0.994) TCGA-BR-4184-01 2 32756560 32756560 G A BIRC6 Missense_Mutation p.G4078D 0.12 probably_damaging(1) TCGA-BR-4184-01 2 32836528 32836529 - T BIRC6 Frame_Shift_Ins p.Y4760Lfs*6 0.28 TCGA-BR-4184-01 2 32958941 32958941 G A TTC27 Missense_Mutation p.R427H 0.22 deleterious(0) probably_damaging(0.997) TCGA-BR-4184-01 2 33952147 33952147 G A AC009499.1 Intron 0.40 TCGA-BR-4184-01 2 3482617 3482617 C T TRAPPC12 Silent p.S626S 0.18 TCGA-BR-4184-01 2 36704131 36704131 C T CRIM1 Missense_Mutation p.A364V 0.09 deleterious(0.01) benign(0.014) TCGA-BR-4184-01 2 36739513 36739513 G A CRIM1 Missense_Mutation p.G586S 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-BR-4184-01 2 37085089 37085089 G A STRN Missense_Mutation p.R583C 0.09 deleterious(0.02) possibly_damaging(0.893) TCGA-BR-4184-01 2 37443454 37443461 CATACCTT - CEBPZ Splice_Site p.X770_splice 0.26 TCGA-BR-4184-01 2 37594392 37594392 G A QPCT Silent p.K188K 0.28 TCGA-BR-4184-01 2 44200831 44200831 C T LRPPRC Silent p.K428K 0.05 TCGA-BR-4184-01 2 44428873 44428873 C T PPM1B Nonsense_Mutation p.R179* 0.28 TCGA-BR-4184-01 2 45171956 45171956 G A SIX3 3'UTR 0.38 TCGA-BR-4184-01 2 48809431 48809431 G A STON1-GTF2A1L Silent p.A553A 0.31 TCGA-BR-4184-01 2 48873848 48873848 T C STON1-GTF2A1L Silent p.S919S 0.26 TCGA-BR-4184-01 2 50724782 50724782 C T NRXN1 Silent p.R896R 0.30 TCGA-BR-4184-01 2 50779924 50779924 G A NRXN1 Silent p.S560S 0.30 TCGA-BR-4184-01 2 51254674 51254674 C T NRXN1 Silent p.S246S 0.33 TCGA-BR-4184-01 2 54093345 54093345 T - PSME4 Frame_Shift_Del p.T1805Pfs*69 0.25 TCGA-BR-4184-01 2 55489457 55489457 T - MTIF2 Frame_Shift_Del p.N109Tfs*10 0.24 TCGA-BR-4184-01 2 55490845 55490845 G T MTIF2 Silent p.A50A 0.12 TCGA-BR-4184-01 2 56098194 56098194 G A EFEMP1 Silent p.G355G 0.19 TCGA-BR-4184-01 2 58459193 58459193 C T FANCL Missense_Mutation p.A51T 0.27 deleterious(0.05) possibly_damaging(0.877) TCGA-BR-4184-01 2 60679659 60679659 C T BCL11A 3'Flank 0.27 TCGA-BR-4184-01 2 60997606 60997606 C T PAPOLG Missense_Mutation p.A151V 0.17 deleterious(0.01) probably_damaging(0.916) TCGA-BR-4184-01 2 61192233 61192233 G A PUS10 Missense_Mutation p.A228V 0.35 tolerated(0.21) benign(0.003) TCGA-BR-4184-01 2 61198669 61198669 T - PUS10 Frame_Shift_Del p.K164Nfs*16 0.23 TCGA-BR-4184-01 2 61415812 61415812 G A USP34 Missense_Mutation p.R3356C 0.22 deleterious(0) possibly_damaging(0.797) TCGA-BR-4184-01 2 61447484 61447484 G A USP34 Missense_Mutation p.R2670W 0.07 tolerated(0.06) probably_damaging(0.937) TCGA-BR-4184-01 2 61575222 61575222 G A USP34 Nonsense_Mutation p.R690* 0.30 TCGA-BR-4184-01 2 61597500 61597500 G A USP34 Nonsense_Mutation p.R403* 0.22 TCGA-BR-4184-01 2 65540766 65540766 G T SPRED2 Missense_Mutation p.L376I 0.17 tolerated(0.09) probably_damaging(0.936) TCGA-BR-4184-01 2 66798693 66798693 A G MEIS1 3'UTR 0.33 TCGA-BR-4184-01 2 68882118 68882118 G A PROKR1 Missense_Mutation p.A198T 0.10 deleterious(0) probably_damaging(0.997) TCGA-BR-4184-01 2 68962211 68962211 G A ARHGAP25 5'UTR 0.29 TCGA-BR-4184-01 2 68962276 68962276 C T ARHGAP25 5'UTR 0.11 TCGA-BR-4184-01 2 69870045 69870045 C T AAK1 Missense_Mutation p.R43Q 0.19 deleterious(0.01) unknown(0) TCGA-BR-4184-01 2 70692857 70692857 C T TGFA Missense_Mutation p.V36M 0.32 tolerated(0.11) benign(0.007) TCGA-BR-4184-01 2 70933382 70933382 G A ADD2 Silent p.R53R 0.23 TCGA-BR-4184-01 2 71036887 71036887 C T CLEC4F Missense_Mutation p.A548T 0.25 tolerated(0.58) benign(0.013) TCGA-BR-4184-01 2 71298926 71298926 C T NAGK Silent p.A154A 0.19 TCGA-BR-4184-01 2 7179899 7179899 G A RNF144A 3'UTR 0.13 TCGA-BR-4184-01 2 73518527 73518527 G A EGR4 3'UTR 0.53 TCGA-BR-4184-01 2 73518781 73518781 C A EGR4 Missense_Mutation p.S525I 0.27 deleterious(0) probably_damaging(0.997) TCGA-BR-4184-01 2 73519457 73519457 C T EGR4 Missense_Mutation p.A300T 0.38 tolerated(0.5) benign(0.023) TCGA-BR-4184-01 2 73717261 73717261 C T ALMS1 Silent p.C2724C 0.24 TCGA-BR-4184-01 2 73868823 73868823 C T NAT8 5'UTR 0.29 TCGA-BR-4184-01 2 73993684 73993685 - A DUSP11 Frame_Shift_Ins p.E266* 0.25 TCGA-BR-4184-01 2 74136221 74136221 G A ACTG2 Missense_Mutation p.A136T 0.28 deleterious_low_confidence(0.04) possibly_damaging(0.462) TCGA-BR-4184-01 2 74317033 74317033 C T TET3 Silent p.C831C 0.28 TCGA-BR-4184-01 2 74593377 74593377 G - DCTN1 Frame_Shift_Del p.S919Afs*25 0.21 TCGA-BR-4184-01 2 74688835 74688835 A G MOGS Missense_Mutation p.L694P 0.32 deleterious(0) probably_damaging(0.996) TCGA-BR-4184-01 2 75116443 75116443 G A HK2 Missense_Mutation p.S816N 0.24 deleterious(0.04) benign(0.199) TCGA-BR-4184-01 2 80530493 80530493 G A LRRTM1 Missense_Mutation p.A151V 0.20 tolerated(0.4) benign(0.031) TCGA-BR-4184-01 2 85578103 85578103 G A RETSAT Missense_Mutation p.R133C 0.27 deleterious(0) probably_damaging(0.994) TCGA-BR-4184-01 2 86677062 86677062 C T KDM3A Nonsense_Mutation p.R107* 0.08 TCGA-BR-4184-01 2 86705832 86705832 C T KDM3A Missense_Mutation p.P764S 0.14 deleterious(0) probably_damaging(0.998) TCGA-BR-4184-01 2 88474827 88474827 G A THNSL2 Missense_Mutation p.D160N 0.25 deleterious(0.04) possibly_damaging(0.517) TCGA-BR-4184-01 2 8871355 8871355 G A KIDINS220 Missense_Mutation p.A1604V 0.33 deleterious_low_confidence(0.03) benign(0.006) TCGA-BR-4184-01 2 8890383 8890383 C T KIDINS220 Silent p.A1091A 0.24 TCGA-BR-4184-01 2 90212138 90212138 G A IGKV3D-11 Missense_Mutation p.G77D 0.26 deleterious(0.01) benign(0.213) TCGA-BR-4184-01 2 9548269 9548269 G A ITGB1BP1 Silent p.G118G 0.15 TCGA-BR-4184-01 2 95488801 95488801 G T ANKRD20A8P RNA 0.22 TCGA-BR-4184-01 2 9572738 9572738 C T CPSF3 Missense_Mutation p.A147V 0.08 tolerated(0.2) benign(0.022) TCGA-BR-4184-01 2 96072853 96072853 C T FAHD2A Missense_Mutation p.A137V 0.19 deleterious(0.03) benign(0.261) TCGA-BR-4184-01 2 9624576 9624576 G A IAH1 Missense_Mutation p.R154H 0.21 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 2 96657298 96657298 G A ANKRD36C Silent p.L53L 0.25 TCGA-BR-4184-01 2 96858204 96858204 G A STARD7 Missense_Mutation p.A249V 0.22 deleterious(0) probably_damaging(0.986) TCGA-BR-4184-01 2 97024926 97024926 G A NCAPH Missense_Mutation p.R451H 0.10 tolerated(1) benign(0.002) TCGA-BR-4184-01 2 9728312 9728312 G A YWHAQ Silent p.A188A 0.26 TCGA-BR-4184-01 2 97364841 97364841 C T FER1L5 RNA 0.14 TCGA-BR-4184-01 2 97369074 97369074 G A LMAN2L 3'Flank 0.25 TCGA-BR-4184-01 2 97369993 97369993 A - LMAN2L 3'Flank 0.19 TCGA-BR-4184-01 2 97784178 97784178 A G ANKRD36 Missense_Mutation p.Y137C 0.31 deleterious(0.01) probably_damaging(0.985) TCGA-BR-4184-01 2 98409946 98409946 G A TMEM131 Missense_Mutation p.R1153W 0.22 deleterious(0) probably_damaging(0.977) TCGA-BR-4184-01 2 99241956 99241956 A - MGAT4A 3'UTR 0.40 TCGA-BR-4184-01 2 99976770 99976770 A T EIF5B Missense_Mutation p.E36V 0.33 unknown(0) TCGA-BR-4184-01 2 99977650 99977650 A - EIF5B Frame_Shift_Del p.K98Rfs*83 0.24 TCGA-BR-4184-01 2 99978220 99978220 A T EIF5B Missense_Mutation p.T286S 0.20 benign(0) TCGA-BR-4184-01 3 10084330 10084330 G A FANCD2 Missense_Mutation p.A291T 0.19 tolerated(0.1) benign(0.059) TCGA-BR-4184-01 3 101520245 101520245 G A NXPE3 Missense_Mutation p.R87Q 0.29 tolerated(0.42) benign(0.052) TCGA-BR-4184-01 3 105243139 105243139 C T ALCAM Missense_Mutation p.P61S 0.23 tolerated(0.74) benign(0.012) TCGA-BR-4184-01 3 105400357 105400357 C T CBLB Silent p.T798T 0.10 TCGA-BR-4184-01 3 105404299 105404299 G T CBLB Missense_Mutation p.P689Q 0.12 deleterious_low_confidence(0.01) benign(0.004) TCGA-BR-4184-01 3 108076864 108076864 C T HHLA2 Nonsense_Mutation p.R287* 0.20 TCGA-BR-4184-01 3 108276166 108276166 C T KIAA1524 Silent p.A703A 0.10 TCGA-BR-4184-01 3 109023460 109023460 A G DPPA2 Missense_Mutation p.V239A 0.27 deleterious(0.01) benign(0.331) TCGA-BR-4184-01 3 11067198 11067198 A G SLC6A1 Missense_Mutation p.T260A 0.16 deleterious(0) possibly_damaging(0.688) TCGA-BR-4184-01 3 111602882 111602882 G A PHLDB2 Intron 0.08 TCGA-BR-4184-01 3 111632332 111632332 G A PHLDB2 Missense_Mutation p.S501N 0.21 tolerated(0.37) benign(0.001) TCGA-BR-4184-01 3 111828413 111828413 G A C3orf52 Intron 0.39 TCGA-BR-4184-01 3 111845872 111845873 - T GCSAM Frame_Shift_Ins p.I53Nfs*5 0.14 TCGA-BR-4184-01 3 112324203 112324203 C T CCDC80 3'UTR 0.25 TCGA-BR-4184-01 3 113005615 113005615 C T BOC Missense_Mutation p.P1084L 0.09 deleterious_low_confidence(0) benign(0.008) TCGA-BR-4184-01 3 113146042 113146042 C T WDR52 Missense_Mutation p.S82N 0.28 tolerated(0.31) benign(0.024) TCGA-BR-4184-01 3 113503074 113503074 G A ATP6V1A Missense_Mutation p.G72D 0.18 deleterious(0) probably_damaging(0.951) TCGA-BR-4184-01 3 11372822 11372822 T C ATG7 Silent p.I229I 0.27 TCGA-BR-4184-01 3 113765535 113765535 A - KIAA1407 Frame_Shift_Del p.F58Lfs*18 0.20 TCGA-BR-4184-01 3 113850099 113850099 G A DRD3 Missense_Mutation p.A291V 0.20 tolerated(0.26) benign(0.27) TCGA-BR-4184-01 3 113955754 113955754 G A ZNF80 Silent p.S56S 0.08 TCGA-BR-4184-01 3 114058003 114058003 G - ZBTB20 Frame_Shift_Del p.P692Lfs*43 0.17 TCGA-BR-4184-01 3 11606426 11606426 C T VGLL4 Missense_Mutation p.A114T 0.44 tolerated(0.41) benign(0.036) TCGA-BR-4184-01 3 11643341 11643341 C T VGLL4 Missense_Mutation p.V80I 0.20 tolerated(0.26) benign(0.027) TCGA-BR-4184-01 3 119211339 119211339 C T POGLUT1 3'UTR 0.29 TCGA-BR-4184-01 3 119379244 119379244 G A POPDC2 Silent p.G9G 0.11 TCGA-BR-4184-01 3 119434422 119434422 A G MAATS1 Missense_Mutation p.T172A 0.26 tolerated(0.7) benign(0.002) TCGA-BR-4184-01 3 121228903 121228903 G A POLQ Missense_Mutation p.A600V 0.09 tolerated(0.31) benign(0.002) TCGA-BR-4184-01 3 121414107 121414107 C T GOLGB1 Missense_Mutation p.D1755N 0.09 benign(0.004) TCGA-BR-4184-01 3 121417211 121417211 G A GOLGB1 Missense_Mutation p.A720V 0.29 benign(0.003) TCGA-BR-4184-01 3 122002869 122002869 C T CASR Missense_Mutation p.L700F 0.20 deleterious(0.01) possibly_damaging(0.759) TCGA-BR-4184-01 3 122418640 122418640 A - PARP14 Frame_Shift_Del p.N415Mfs*3 0.25 TCGA-BR-4184-01 3 122990631 122990631 G A SEC22A 3'UTR 0.31 TCGA-BR-4184-01 3 123046535 123046535 C - ADCY5 Frame_Shift_Del p.G626Afs*30 0.34 TCGA-BR-4184-01 3 123633803 123633803 G A CCDC14 Silent p.G854G 0.08 TCGA-BR-4184-01 3 125271044 125271044 G A OSBPL11 Silent p.G545G 0.20 TCGA-BR-4184-01 3 12544798 12544798 C T TSEN2 Missense_Mutation p.R116C 0.22 tolerated(0.19) benign(0.022) TCGA-BR-4184-01 3 12570415 12570415 C T TSEN2 Silent p.Y376Y 0.10 TCGA-BR-4184-01 3 126153218 126153218 G A CCDC37 Missense_Mutation p.R541H 0.21 deleterious(0.03) benign(0.189) TCGA-BR-4184-01 3 126180285 126180285 C T ZXDC Intron 0.25 TCGA-BR-4184-01 3 12647737 12647737 G A RAF1 Missense_Mutation p.R215C 0.32 tolerated(0.09) benign(0.014) TCGA-BR-4184-01 3 126708525 126708525 G A PLXNA1 Silent p.R363R 0.09 TCGA-BR-4184-01 3 126733356 126733356 G A PLXNA1 Silent p.T880T 0.25 TCGA-BR-4184-01 3 126733466 126733466 C T PLXNA1 Missense_Mutation p.A917V 0.19 deleterious(0) possibly_damaging(0.856) TCGA-BR-4184-01 3 126733645 126733645 G A PLXNA1 Missense_Mutation p.A950T 0.42 tolerated(0.48) benign(0.236) TCGA-BR-4184-01 3 127323952 127323952 G A MCM2 Missense_Mutation p.S209N 0.09 tolerated(0.08) benign(0.004) TCGA-BR-4184-01 3 127340010 127340010 G A MCM2 Missense_Mutation p.R848H 0.31 deleterious(0.03) benign(0.082) TCGA-BR-4184-01 3 127396374 127396374 C T ABTB1 Nonsense_Mutation p.R277* 0.26 TCGA-BR-4184-01 3 127646815 127646815 G A KBTBD12 Missense_Mutation p.A427T 0.32 deleterious(0.01) probably_damaging(1) TCGA-BR-4184-01 3 128292461 128292461 G T C3orf27 Missense_Mutation p.L38I 0.22 possibly_damaging(0.567) TCGA-BR-4184-01 3 128990627 128990627 C T COPG1 Missense_Mutation p.P621S 0.26 deleterious(0.03) possibly_damaging(0.728) TCGA-BR-4184-01 3 128991723 128991723 C T COPG1 Silent p.D744D 0.08 TCGA-BR-4184-01 3 129009633 129009635 ATC TT HMCES Frame_Shift_Del p.I147Lfs*28 0.11 TCGA-BR-4184-01 3 129238561 129238561 C A IFT122 Missense_Mutation p.P1259T 0.28 tolerated(0.11) benign(0.373) TCGA-BR-4184-01 3 130716497 130716497 G A ATP2C1 Missense_Mutation p.R798H 0.26 deleterious(0) probably_damaging(0.961) TCGA-BR-4184-01 3 132407734 132407734 G A NPHP3 Missense_Mutation p.A962V 0.17 deleterious(0.03) benign(0.443) TCGA-BR-4184-01 3 133347516 133347516 G A TOPBP1 Missense_Mutation p.T861M 0.24 deleterious(0) possibly_damaging(0.677) TCGA-BR-4184-01 3 133358892 133358892 G A TOPBP1 Missense_Mutation p.A715V 0.12 deleterious(0) probably_damaging(0.966) TCGA-BR-4184-01 3 133375669 133375669 G A TOPBP1 Silent p.G132G 0.11 TCGA-BR-4184-01 3 133557073 133557073 G A RAB6B Silent p.R144R 0.23 TCGA-BR-4184-01 3 13381431 13381431 C T NUP210 Missense_Mutation p.A1132T 0.22 tolerated(0.29) benign(0.014) TCGA-BR-4184-01 3 134090186 134090186 C T AMOTL2 Silent p.T30T 0.28 TCGA-BR-4184-01 3 13415302 13415302 G A NUP210 Silent p.G501G 0.17 TCGA-BR-4184-01 3 13546068 13546068 G A HDAC11 Missense_Mutation p.R310H 0.41 deleterious(0.03) probably_damaging(0.973) TCGA-BR-4184-01 3 136287655 136287655 C T STAG1 Missense_Mutation p.A116T 0.10 deleterious(0.01) benign(0.271) TCGA-BR-4184-01 3 136573585 136573586 - A SLC35G2 Frame_Shift_Ins p.N97Kfs*27 0.23 TCGA-BR-4184-01 3 137750104 137750104 G A CLDN18 3'UTR 0.38 TCGA-BR-4184-01 3 137783521 137783521 A - DZIP1L Frame_Shift_Del p.F697Lfs*80 0.08 TCGA-BR-4184-01 3 137880689 137880689 A - DBR1 3'UTR 0.25 TCGA-BR-4184-01 3 138433482 138433482 T - PIK3CB Frame_Shift_Del p.N377Mfs*35 0.23 TCGA-BR-4184-01 3 139074577 139074577 G A MRPS22 Missense_Mutation p.G311D 0.10 tolerated(0.15) possibly_damaging(0.564) TCGA-BR-4184-01 3 139077837 139077837 C T COPB2 Intron 0.08 TCGA-BR-4184-01 3 140167437 140167437 C T CLSTN2 Silent p.C288C 0.08 TCGA-BR-4184-01 3 140401502 140401502 C T TRIM42 Silent p.T180T 0.33 TCGA-BR-4184-01 3 141231095 141231095 G A RASA2 Missense_Mutation p.R75H 0.24 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 3 14724291 14724291 G A C3orf20 Missense_Mutation p.R24H 0.09 tolerated(1) benign(0.004) TCGA-BR-4184-01 3 148558742 148558742 C T CPB1 Missense_Mutation p.R152C 0.11 deleterious(0) probably_damaging(0.95) TCGA-BR-4184-01 3 148781227 148781227 C T HLTF Missense_Mutation p.R384H 0.16 tolerated(0.57) benign(0.009) TCGA-BR-4184-01 3 150460413 150460413 G A SIAH2 Missense_Mutation p.R164C 0.11 deleterious(0.01) possibly_damaging(0.799) TCGA-BR-4184-01 3 151046245 151046245 G A P2RY13 Missense_Mutation p.P200L 0.09 tolerated(0.12) benign(0.048) TCGA-BR-4184-01 3 15116081 15116081 C A ZFYVE20 Missense_Mutation p.Q521H 0.23 deleterious_low_confidence(0) possibly_damaging(0.778) TCGA-BR-4184-01 3 151176330 151176330 C T IGSF10 Silent p.P56P 0.27 TCGA-BR-4184-01 3 15123940 15123940 C T ZFYVE20 Silent p.T258T 0.27 TCGA-BR-4184-01 3 15269407 15269407 C T CAPN7 Nonsense_Mutation p.R263* 0.33 TCGA-BR-4184-01 3 15298644 15298644 C T SH3BP5 Intron 0.13 TCGA-BR-4184-01 3 153840497 153840497 G A ARHGEF26 Missense_Mutation p.S239N 0.36 deleterious(0) possibly_damaging(0.849) TCGA-BR-4184-01 3 153935682 153935682 G A ARHGEF26 Missense_Mutation p.A624T 0.31 deleterious(0) possibly_damaging(0.532) TCGA-BR-4184-01 3 154010423 154010423 A - DHX36 Frame_Shift_Del p.F577Lfs*47 0.09 TCGA-BR-4184-01 3 154022736 154022736 C T DHX36 Missense_Mutation p.V332I 0.21 tolerated(1) benign(0.009) TCGA-BR-4184-01 3 154055676 154055676 C T GPR149 Missense_Mutation p.A670T 0.21 deleterious(0) probably_damaging(0.998) TCGA-BR-4184-01 3 15493125 15493125 C T COLQ 3'UTR 0.09 TCGA-BR-4184-01 3 155215148 155215148 A G PLCH1 Missense_Mutation p.Y607H 0.06 deleterious(0.01) probably_damaging(0.996) TCGA-BR-4184-01 3 155560396 155560396 A - SLC33A1 Frame_Shift_Del p.F263Sfs*7 0.21 TCGA-BR-4184-01 3 155639982 155639982 G A GMPS Missense_Mutation p.G442D 0.16 deleterious(0) probably_damaging(0.98) TCGA-BR-4184-01 3 156272757 156272757 G A SSR3 Missense_Mutation p.A41V 0.33 tolerated(0.13) benign(0.074) TCGA-BR-4184-01 3 156396186 156396186 A C TIPARP Missense_Mutation p.T234P 0.08 deleterious(0.01) probably_damaging(0.949) TCGA-BR-4184-01 3 160138560 160138560 C T SMC4 Silent p.D630D 0.14 TCGA-BR-4184-01 3 16358554 16358554 C A RFTN1 Missense_Mutation p.E506D 0.10 tolerated_low_confidence(0.18) benign(0.167) TCGA-BR-4184-01 3 164709998 164709998 G A SI Silent p.Y1650Y 0.25 TCGA-BR-4184-01 3 167189546 167189546 T - SERPINI2 Frame_Shift_Del p.N26Ifs*27 0.23 TCGA-BR-4184-01 3 167728023 167728023 C T GOLIM4 3'UTR 0.31 TCGA-BR-4184-01 3 169802468 169802469 - A GPR160 Frame_Shift_Ins p.I239Nfs*28 0.19 TCGA-BR-4184-01 3 170184883 170184883 G A SLC7A14 Missense_Mutation p.A759V 0.07 deleterious_low_confidence(0.02) probably_damaging(0.935) TCGA-BR-4184-01 3 170805172 170805172 G A TNIK Missense_Mutation p.R949C 0.10 tolerated(0.07) probably_damaging(0.932) TCGA-BR-4184-01 3 172166024 172166024 G A GHSR Silent p.G60G 0.18 TCGA-BR-4184-01 3 179051265 179051265 G A ZNF639 Silent p.P171P 0.22 TCGA-BR-4184-01 3 179069813 179069813 T - MFN1 Frame_Shift_Del p.F81Lfs*28 0.26 TCGA-BR-4184-01 3 179408081 179408081 T - USP13 Frame_Shift_Del p.L118* 0.20 TCGA-BR-4184-01 3 179437789 179437789 G A USP13 Silent p.A289A 0.21 TCGA-BR-4184-01 3 180334111 180334111 C T CCDC39 Missense_Mutation p.R876H 0.23 tolerated(0.29) benign(0.001) TCGA-BR-4184-01 3 180652985 180652986 - A FXR1 Frame_Shift_Ins p.E58Rfs*3 0.13 TCGA-BR-4184-01 3 180688056 180688056 C T FXR1 Missense_Mutation p.R505W 0.22 deleterious_low_confidence(0.04) benign(0.058) TCGA-BR-4184-01 3 183490118 183490118 C T YEATS2 Missense_Mutation p.A658V 0.27 deleterious_low_confidence(0) benign(0.092) TCGA-BR-4184-01 3 183689508 183689508 C T ABCC5 Missense_Mutation p.R535H 0.24 tolerated(0.27) benign(0) TCGA-BR-4184-01 3 183900553 183900553 G A AP2M1 Missense_Mutation p.R357H 0.09 deleterious(0) benign(0.128) TCGA-BR-4184-01 3 183910955 183910955 C T ABCF3 Missense_Mutation p.R606C 0.30 deleterious(0) probably_damaging(0.987) TCGA-BR-4184-01 3 183978984 183978984 C T CAMK2N2 Silent p.L30L 0.22 TCGA-BR-4184-01 3 184002835 184002835 G A ECE2 Missense_Mutation p.V482M 0.10 deleterious(0) probably_damaging(0.99) TCGA-BR-4184-01 3 184025435 184025435 G A PSMD2 Missense_Mutation p.R746H 0.25 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 3 184039307 184039307 G A EIF4G1 Missense_Mutation p.R319H 0.30 tolerated(0.14) benign(0.002) TCGA-BR-4184-01 3 184290699 184290699 C T EPHB3 Silent p.G197G 0.52 TCGA-BR-4184-01 3 184297350 184297350 C T EPHB3 Silent p.D629D 0.45 TCGA-BR-4184-01 3 184714256 184714256 G A VPS8 Missense_Mutation p.R1268H 0.27 tolerated(0.13) benign(0.005) TCGA-BR-4184-01 3 185347619 185347619 A C SENP2 Missense_Mutation p.Q586P 0.09 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 3 185643269 185643269 G A TRA2B Missense_Mutation p.R106C 0.11 deleterious(0) unknown(0) TCGA-BR-4184-01 3 186281967 186281967 C T TBCCD1 Missense_Mutation p.R51H 0.13 tolerated(0.09) benign(0.015) TCGA-BR-4184-01 3 191093199 191093199 A - CCDC50 Frame_Shift_Del p.K267Nfs*61 0.18 TCGA-BR-4184-01 3 191097951 191097951 T C CCDC50 Missense_Mutation p.M327T 0.38 tolerated(0.87) benign(0.001) TCGA-BR-4184-01 3 19190212 19190212 A T KCNH8 Translation_Start_Site p.M1? 0.30 deleterious(0) possibly_damaging(0.746) TCGA-BR-4184-01 3 192516280 192516280 T - MB21D2 Frame_Shift_Del p.K457Nfs*5 0.24 TCGA-BR-4184-01 3 192516776 192516776 G A MB21D2 Missense_Mutation p.A292V 0.14 deleterious(0.01) possibly_damaging(0.893) TCGA-BR-4184-01 3 193171906 193171906 C T ATP13A4 Missense_Mutation p.A671T 0.20 tolerated(0.28) benign(0.001) TCGA-BR-4184-01 3 193180607 193180607 G A ATP13A4 Silent p.G489G 0.21 TCGA-BR-4184-01 3 193343987 193343987 G A OPA1 Missense_Mutation p.R244H 0.34 deleterious(0.01) benign(0.34) TCGA-BR-4184-01 3 194080553 194080553 C T LRRC15 Missense_Mutation p.G413D 0.31 tolerated(0.38) benign(0.132) TCGA-BR-4184-01 3 194158063 194158063 G A ATP13A3 Missense_Mutation p.A659V 0.24 tolerated(0.13) benign(0.333) TCGA-BR-4184-01 3 195245976 195245976 T - PPP1R2 Frame_Shift_Del p.K137Sfs*6 0.21 TCGA-BR-4184-01 3 195508234 195508234 G A MUC4 Missense_Mutation p.T3406I 0.14 possibly_damaging(0.517) TCGA-BR-4184-01 3 195508379 195508379 C T MUC4 Missense_Mutation p.A3358T 0.16 possibly_damaging(0.494) TCGA-BR-4184-01 3 196054415 196054415 C T TM4SF19 Missense_Mutation p.R16H 0.24 deleterious(0.01) possibly_damaging(0.885) TCGA-BR-4184-01 3 196388524 196388524 C T NRROS Silent p.I670I 0.27 TCGA-BR-4184-01 3 196736624 196736624 C T MFI2 Missense_Mutation p.A464T 0.26 tolerated(0.3) benign(0.097) TCGA-BR-4184-01 3 197402018 197402018 C T KIAA0226 Silent p.P930P 0.18 TCGA-BR-4184-01 3 197559147 197559147 A G LRCH3 Missense_Mutation p.Y354C 0.10 tolerated(0.12) possibly_damaging(0.905) TCGA-BR-4184-01 3 197618326 197618326 G A IQCG Silent p.S396S 0.31 TCGA-BR-4184-01 3 20194018 20194018 T - KAT2B 3'UTR 0.29 TCGA-BR-4184-01 3 25668727 25668727 C T TOP2B Missense_Mutation p.R651H 0.15 deleterious(0) probably_damaging(0.931) TCGA-BR-4184-01 3 26751046 26751046 A G LRRC3B 5'UTR 0.14 TCGA-BR-4184-01 3 26751777 26751777 C T LRRC3B Missense_Mutation p.A205V 0.19 deleterious(0) probably_damaging(0.996) TCGA-BR-4184-01 3 27244008 27244008 C A NEK10 Missense_Mutation p.D711Y 0.28 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 3 28476697 28476697 C T ZCWPW2 Silent p.G143G 0.26 TCGA-BR-4184-01 3 31710298 31710298 C T OSBPL10 Silent p.K644K 0.23 TCGA-BR-4184-01 3 31725328 31725328 A G OSBPL10 Silent p.P508P 0.21 TCGA-BR-4184-01 3 3189779 3189779 A - TRNT1 Frame_Shift_Del p.S418Vfs*11 0.22 TCGA-BR-4184-01 3 32409470 32409470 C T CMTM8 Missense_Mutation p.A143V 0.08 tolerated(0.2) benign(0.298) TCGA-BR-4184-01 3 33174107 33174107 A G CRTAP Missense_Mutation p.D328G 0.08 deleterious(0.01) possibly_damaging(0.49) TCGA-BR-4184-01 3 33453092 33453092 C T UBP1 Missense_Mutation p.R179H 0.26 deleterious(0.01) possibly_damaging(0.582) TCGA-BR-4184-01 3 33592749 33592749 G A CLASP2 Missense_Mutation p.R1058W 0.19 deleterious(0) possibly_damaging(0.853) TCGA-BR-4184-01 3 33617676 33617676 C T CLASP2 Silent p.A814A 0.21 TCGA-BR-4184-01 3 33729801 33729801 G A CLASP2 Silent p.G146G 0.25 TCGA-BR-4184-01 3 33870419 33870419 A - PDCD6IP Frame_Shift_Del p.K270Nfs*19 0.20 TCGA-BR-4184-01 3 36873314 36873314 C T TRANK1 Missense_Mutation p.R2543H 0.30 tolerated(0.35) benign(0.002) TCGA-BR-4184-01 3 36873381 36873381 G T TRANK1 Missense_Mutation p.L2521M 0.07 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 3 36897695 36897695 C T TRANK1 Missense_Mutation p.G1129D 0.10 tolerated(0.65) benign(0.05) TCGA-BR-4184-01 3 37367797 37367797 G A GOLGA4 Missense_Mutation p.A1496T 0.10 benign(0.012) TCGA-BR-4184-01 3 37388776 37388776 C T GOLGA4 Missense_Mutation p.R2204C 0.32 probably_damaging(0.969) TCGA-BR-4184-01 3 38061761 38061761 C T PLCD1 Silent p.E60E 0.27 TCGA-BR-4184-01 3 38136483 38136483 C T DLEC1 Missense_Mutation p.A678V 0.32 tolerated(0.06) possibly_damaging(0.54) TCGA-BR-4184-01 3 38294402 38294402 C T OXSR1 3'UTR 0.12 TCGA-BR-4184-01 3 38316619 38316619 G A SLC22A13 Silent p.A259A 0.09 TCGA-BR-4184-01 3 38354921 38354921 G A SLC22A14 Missense_Mutation p.D370N 0.19 deleterious(0) possibly_damaging(0.822) TCGA-BR-4184-01 3 3888176 3888176 C A LRRN1 Silent p.A617A 0.26 TCGA-BR-4184-01 3 3888320 3888320 A - LRRN1 Frame_Shift_Del p.K667Sfs*11 0.18 TCGA-BR-4184-01 3 39186606 39186606 C T CSRNP1 Missense_Mutation p.R116H 0.31 deleterious(0.02) benign(0.024) TCGA-BR-4184-01 3 39437962 39437962 C T SLC25A38 Missense_Mutation p.A289V 0.20 deleterious(0.03) possibly_damaging(0.864) TCGA-BR-4184-01 3 40456333 40456333 T C ENTPD3 Splice_Site p.X199_splice 0.39 TCGA-BR-4184-01 3 42235319 42235319 G A TRAK1 Missense_Mutation p.A302T 0.25 tolerated(0.17) benign(0.034) TCGA-BR-4184-01 3 42240734 42240734 T C TRAK1 Silent p.S393S 0.11 TCGA-BR-4184-01 3 42243993 42243993 C T TRAK1 Missense_Mutation p.A498V 0.22 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 3 42610466 42610466 A - SEC22C Frame_Shift_Del p.Y25Tfs*16 0.23 TCGA-BR-4184-01 3 43389129 43389129 T C SNRK Missense_Mutation p.S460P 0.37 tolerated(0.54) benign(0.002) TCGA-BR-4184-01 3 44441970 44441970 A G TCAIM Missense_Mutation p.T337A 0.13 tolerated(0.19) benign(0.047) TCGA-BR-4184-01 3 44635896 44635896 A T ZNF660 Missense_Mutation p.I71F 0.34 deleterious(0.02) benign(0.292) TCGA-BR-4184-01 3 44846554 44846554 C T KIF15 Missense_Mutation p.P575S 0.10 tolerated(1) benign(0.006) TCGA-BR-4184-01 3 45030680 45030680 G A EXOSC7 Missense_Mutation p.E36K 0.18 deleterious(0.01) benign(0.028) TCGA-BR-4184-01 3 45965219 45965221 CTC - FYCO1 In_Frame_Del p.E1430del 0.34 TCGA-BR-4184-01 3 46008705 46008705 G A FYCO1 Silent p.G707G 0.12 TCGA-BR-4184-01 3 46414590 46414590 A G CCR5 Missense_Mutation p.D66G 0.23 deleterious(0.01) probably_damaging(0.989) TCGA-BR-4184-01 3 46560368 46560368 T - LRRC2 3'UTR 0.26 TCGA-BR-4184-01 3 4703860 4703860 C T ITPR1 Missense_Mutation p.A434V 0.24 deleterious(0.02) probably_damaging(0.993) TCGA-BR-4184-01 3 47161907 47161907 T - SETD2 Frame_Shift_Del p.R1407Gfs*5 0.19 TCGA-BR-4184-01 3 4735265 4735265 G A ITPR1 Missense_Mutation p.R1359Q 0.32 tolerated(0.41) probably_damaging(0.99) TCGA-BR-4184-01 3 47453616 47453616 G A PTPN23 Missense_Mutation p.R1369H 0.21 benign(0.17) TCGA-BR-4184-01 3 47604238 47604238 G T CSPG5 Missense_Mutation p.A518D 0.23 deleterious(0) probably_damaging(0.992) TCGA-BR-4184-01 3 47712178 47712178 C T SMARCC1 Nonsense_Mutation p.W623* 0.23 TCGA-BR-4184-01 3 47888355 47888355 G A DHX30 Missense_Mutation p.R598H 0.29 deleterious(0.02) probably_damaging(0.919) TCGA-BR-4184-01 3 4808340 4808340 G T ITPR1 Nonsense_Mutation p.G1876* 0.28 TCGA-BR-4184-01 3 4825528 4825528 G A ITPR1 Missense_Mutation p.S2165N 0.27 tolerated(0.54) benign(0) TCGA-BR-4184-01 3 48369810 48369810 C T SPINK8 Missense_Mutation p.A8T 0.25 tolerated(0.28) benign(0.001) TCGA-BR-4184-01 3 48451962 48451962 G A PLXNB1 Missense_Mutation p.R1808W 0.14 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 3 48455097 48455097 A G PLXNB1 Missense_Mutation p.I1506T 0.32 deleterious(0) benign(0.11) TCGA-BR-4184-01 3 48678953 48678953 C A CELSR3 Silent p.V2943V 0.28 TCGA-BR-4184-01 3 49043193 49043193 C - P4HTM Frame_Shift_Del p.L416Cfs*6 0.30 TCGA-BR-4184-01 3 49095173 49095173 G A QRICH1 Missense_Mutation p.P154S 0.09 tolerated_low_confidence(0.3) possibly_damaging(0.641) TCGA-BR-4184-01 3 49114337 49114337 C T QRICH1 Silent p.G38G 0.11 TCGA-BR-4184-01 3 49148537 49148537 G A USP19 Missense_Mutation p.R1129C 0.33 deleterious(0.03) probably_damaging(0.995) TCGA-BR-4184-01 3 49200838 49200838 C T CCDC71 Silent p.R268R 0.21 TCGA-BR-4184-01 3 49292916 49292916 G T CCDC36 Missense_Mutation p.R209I 0.32 tolerated(0.05) benign(0.037) TCGA-BR-4184-01 3 49322015 49322015 G T USP4 Silent p.A758A 0.21 TCGA-BR-4184-01 3 49459799 49459799 C T AMT Missense_Mutation p.A29T 0.21 tolerated(0.2) benign(0.001) TCGA-BR-4184-01 3 49570086 49570086 G A DAG1 Silent p.R714R 0.10 TCGA-BR-4184-01 3 49694978 49694978 C T BSN Silent p.S2663S 0.22 TCGA-BR-4184-01 3 49699714 49699714 C T BSN Missense_Mutation p.A3479V 0.27 unknown(0) TCGA-BR-4184-01 3 49785329 49785329 T C IP6K1 Missense_Mutation p.K49E 0.08 deleterious(0) probably_damaging(0.993) TCGA-BR-4184-01 3 49935976 49935976 T A MST1R Missense_Mutation p.D565V 0.27 deleterious(0) probably_damaging(0.986) TCGA-BR-4184-01 3 50231062 50231062 G A GNAT1 Missense_Mutation p.A139T 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-BR-4184-01 3 50314079 50314079 G A LSMEM2 5'Flank 0.27 TCGA-BR-4184-01 3 50679181 50679181 G A MAPKAPK3 Missense_Mutation p.D135N 0.10 tolerated(0.09) benign(0.02) TCGA-BR-4184-01 3 51102018 51102018 G - DOCK3 Frame_Shift_Del p.G153Vfs*17 0.16 TCGA-BR-4184-01 3 51417604 51417605 CC - DOCK3 Frame_Shift_Del p.P1852Sfs*46 0.27 TCGA-BR-4184-01 3 51418570 51418570 C T DOCK3 Silent p.S1891S 0.23 TCGA-BR-4184-01 3 51673538 51673538 C T RAD54L2 Missense_Mutation p.A655V 0.12 tolerated(0.25) benign(0.007) TCGA-BR-4184-01 3 51750038 51750038 G A GRM2 Missense_Mutation p.R750H 0.25 deleterious(0) probably_damaging(0.994) TCGA-BR-4184-01 3 51993937 51993937 G A PCBP4 Missense_Mutation p.R164C 0.10 deleterious(0.03) probably_damaging(0.964) TCGA-BR-4184-01 3 51995032 51995032 G A PCBP4 Silent p.I33I 0.09 TCGA-BR-4184-01 3 52014637 52014637 C T ABHD14A Missense_Mutation p.A209V 0.19 tolerated(0.13) benign(0.34) TCGA-BR-4184-01 3 52326603 52326603 G A GLYCTK Missense_Mutation p.A345T 0.22 deleterious(0) probably_damaging(0.984) TCGA-BR-4184-01 3 52392637 52392637 T A DNAH1 Missense_Mutation p.L1384M 0.20 benign(0.42) TCGA-BR-4184-01 3 52840399 52840399 G A ITIH3 Missense_Mutation p.R678H 0.26 tolerated(0.26) benign(0.34) TCGA-BR-4184-01 3 52966139 52966139 A T SFMBT1 Missense_Mutation p.D213E 0.10 deleterious(0.01) probably_damaging(0.998) TCGA-BR-4184-01 3 53222784 53222784 G T PRKCD Missense_Mutation p.K488N 0.24 deleterious(0) probably_damaging(0.998) TCGA-BR-4184-01 3 53778828 53778828 G A CACNA1D Missense_Mutation p.A1014T 0.20 deleterious(0) probably_damaging(0.998) TCGA-BR-4184-01 3 53899038 53899038 C T IL17RB Silent p.C404C 0.33 TCGA-BR-4184-01 3 54596940 54596940 T - CACNA2D3 Frame_Shift_Del p.F221Lfs*40 0.16 TCGA-BR-4184-01 3 54952504 54952504 A G LRTM1 Silent p.F340F 0.21 TCGA-BR-4184-01 3 55038847 55038847 C T CACNA2D3 Silent p.G916G 0.32 TCGA-BR-4184-01 3 56649217 56649218 CA - CCDC66 Frame_Shift_Del p.Q544Efs*17 0.09 TCGA-BR-4184-01 3 56675649 56675649 G A FAM208A Missense_Mutation p.R783C 0.07 tolerated(0.07) possibly_damaging(0.894) TCGA-BR-4184-01 3 57136541 57136541 C T IL17RD Silent p.T315T 0.12 TCGA-BR-4184-01 3 57293966 57293966 G A APPL1 Missense_Mutation p.R526H 0.18 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 3 58129201 58129201 A T FLNB Silent p.G1793G 0.21 TCGA-BR-4184-01 3 62355881 62355881 G A FEZF2 Silent p.C419C 0.25 TCGA-BR-4184-01 3 62355985 62355985 C A FEZF2 Missense_Mutation p.G385C 0.23 deleterious(0) possibly_damaging(0.875) TCGA-BR-4184-01 3 63825403 63825403 T G THOC7 Silent p.G22G 0.33 TCGA-BR-4184-01 3 63965619 63965619 G A ATXN7 Silent p.P176P 0.21 TCGA-BR-4184-01 3 63975975 63975975 C T ATXN7 Silent p.G495G 0.24 TCGA-BR-4184-01 3 64084813 64084813 C A PRICKLE2 Missense_Mutation p.G817C 0.18 deleterious(0.02) probably_damaging(0.952) TCGA-BR-4184-01 3 64641547 64641547 G A ADAMTS9 Missense_Mutation p.A325V 0.26 deleterious(0) possibly_damaging(0.902) TCGA-BR-4184-01 3 65342481 65342481 G A MAGI1 Missense_Mutation p.R1321W 0.30 deleterious(0) possibly_damaging(0.844) TCGA-BR-4184-01 3 65415516 65415516 C T MAGI1 Missense_Mutation p.V616M 0.18 deleterious(0.05) possibly_damaging(0.81) TCGA-BR-4184-01 3 7188283 7188283 T C GRM7 Missense_Mutation p.S222P 0.28 deleterious(0) probably_damaging(0.996) TCGA-BR-4184-01 3 73453360 73453360 C T PDZRN3 Missense_Mutation p.A369T 0.11 tolerated(0.18) benign(0.04) TCGA-BR-4184-01 3 74334502 74334502 G A CNTN3 Silent p.G886G 0.23 TCGA-BR-4184-01 3 77089857 77089857 T - ROBO2 Intron 0.25 TCGA-BR-4184-01 3 77684125 77684125 A - ROBO2 Frame_Shift_Del p.K1306Nfs*20 0.17 TCGA-BR-4184-01 3 77693990 77693990 C T ROBO2 Missense_Mutation p.A1373V 0.27 tolerated_low_confidence(0.37) possibly_damaging(0.483) TCGA-BR-4184-01 3 8667298 8667298 C T SSUH2 Missense_Mutation p.R268Q 0.30 tolerated(1) benign(0.004) TCGA-BR-4184-01 3 88104713 88104713 G A CGGBP1 Silent p.G138G 0.20 TCGA-BR-4184-01 3 89468398 89468398 A - EPHA3 Frame_Shift_Del p.E647Rfs*9 0.08 TCGA-BR-4184-01 3 93803031 93803031 A G NSUN3 Missense_Mutation p.D68G 0.32 tolerated(0.24) benign(0.05) TCGA-BR-4184-01 3 9476021 9476021 A G SETD5 Missense_Mutation p.I61V 0.27 tolerated(0.18) benign(0.045) TCGA-BR-4184-01 3 9547876 9547876 C T LHFPL4 Missense_Mutation p.V140I 0.29 tolerated(0.2) benign(0.055) TCGA-BR-4184-01 3 9594078 9594078 C T LHFPL4 Missense_Mutation p.A96T 0.27 tolerated(0.69) benign(0.096) TCGA-BR-4184-01 3 97686148 97686148 C T MINA Missense_Mutation p.G97E 0.28 tolerated(0.17) possibly_damaging(0.708) TCGA-BR-4184-01 3 9792752 9792752 G A OGG1 Silent p.R87R 0.16 TCGA-BR-4184-01 3 9857762 9857762 G A TTLL3 Intron 0.28 TCGA-BR-4184-01 3 9920175 9920175 G A CIDEC 5'UTR 0.09 TCGA-BR-4184-01 4 100261758 100261758 C T ADH1C Missense_Mutation p.R313H 0.26 probably_damaging(0.996) TCGA-BR-4184-01 4 100529984 100529984 G A MTTP Missense_Mutation p.R540H 0.32 deleterious(0.05) possibly_damaging(0.881) TCGA-BR-4184-01 4 101947170 101947170 G T PPP3CA Missense_Mutation p.A473D 0.28 deleterious(0) possibly_damaging(0.873) TCGA-BR-4184-01 4 103228683 103228683 C A SLC39A8 Missense_Mutation p.K154N 0.37 deleterious(0.01) probably_damaging(0.982) TCGA-BR-4184-01 4 103789880 103789880 G T UBE2D3 Missense_Mutation p.L8I 0.21 tolerated_low_confidence(1) benign(0.001) TCGA-BR-4184-01 4 104067167 104067167 G T CENPE Missense_Mutation p.P1411H 0.25 benign(0.125) TCGA-BR-4184-01 4 104640294 104640294 G A TACR3 Missense_Mutation p.A180V 0.33 deleterious(0) possibly_damaging(0.868) TCGA-BR-4184-01 4 104640738 104640738 G A TACR3 Missense_Mutation p.A32V 0.25 tolerated_low_confidence(0.06) benign(0) TCGA-BR-4184-01 4 106639056 106639056 C T GSTCD Nonsense_Mutation p.R96* 0.07 TCGA-BR-4184-01 4 107154146 107154146 G A TBCK Missense_Mutation p.R530C 0.26 deleterious(0) probably_damaging(0.997) TCGA-BR-4184-01 4 109663750 109663750 T C ETNPPL Missense_Mutation p.I464V 0.22 tolerated_low_confidence(0.68) benign(0) TCGA-BR-4184-01 4 109681385 109681385 T C ETNPPL Missense_Mutation p.N45S 0.26 tolerated(0.22) benign(0.155) TCGA-BR-4184-01 4 109858963 109858963 C T COL25A1 Splice_Site p.X236_splice 0.21 TCGA-BR-4184-01 4 110442692 110442692 C T SEC24B Silent p.G806G 0.30 TCGA-BR-4184-01 4 110756589 110756589 A G RRH Missense_Mutation p.D122G 0.26 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 4 111397641 111397641 C T ENPEP Missense_Mutation p.A24V 0.27 tolerated(0.13) benign(0.064) TCGA-BR-4184-01 4 111470515 111470515 G A ENPEP Missense_Mutation p.G722D 0.10 tolerated(0.65) benign(0.001) TCGA-BR-4184-01 4 113174397 113174397 G A AP1AR Silent p.E39E 0.08 TCGA-BR-4184-01 4 11401090 11401090 G A HS3ST1 Silent p.R180R 0.41 TCGA-BR-4184-01 4 114278694 114278694 G A ANK2 Missense_Mutation p.A2974T 0.08 benign(0.002) TCGA-BR-4184-01 4 114278954 114278954 A C ANK2 Missense_Mutation p.K3060N 0.33 probably_damaging(0.944) TCGA-BR-4184-01 4 114375607 114375607 G A CAMK2D 3'UTR 0.25 TCGA-BR-4184-01 4 115544223 115544223 G A UGT8 Missense_Mutation p.A63T 0.25 tolerated(0.38) benign(0.003) TCGA-BR-4184-01 4 115997904 115997904 C T NDST4 Missense_Mutation p.A97T 0.25 tolerated(0.34) benign(0.383) TCGA-BR-4184-01 4 120981328 120981328 G - MAD2L1 Frame_Shift_Del p.T188Ifs*6 0.21 TCGA-BR-4184-01 4 1209971 1209971 C T CTBP1 Silent p.A190A 0.36 TCGA-BR-4184-01 4 122075764 122075764 T - TNIP3 Frame_Shift_Del p.N222Ifs*15 0.27 TCGA-BR-4184-01 4 122257980 122257980 C T QRFPR Nonsense_Mutation p.W181* 0.07 TCGA-BR-4184-01 4 122301573 122301573 C T QRFPR Missense_Mutation p.R77H 0.33 tolerated(0.12) possibly_damaging(0.458) TCGA-BR-4184-01 4 122853627 122853627 C T TRPC3 Silent p.P262P 0.19 TCGA-BR-4184-01 4 123140711 123140711 C T KIAA1109 Missense_Mutation p.R822C 0.31 probably_damaging(0.987) TCGA-BR-4184-01 4 126237960 126237960 G A FAT4 Missense_Mutation p.A132T 0.27 benign(0.277) TCGA-BR-4184-01 4 126238572 126238572 C T FAT4 Missense_Mutation p.R336C 0.26 probably_damaging(1) TCGA-BR-4184-01 4 126240523 126240523 T C FAT4 Missense_Mutation p.V986A 0.10 possibly_damaging(0.859) TCGA-BR-4184-01 4 126242112 126242112 A G FAT4 Missense_Mutation p.T1516A 0.06 probably_damaging(0.944) TCGA-BR-4184-01 4 126242602 126242602 G A FAT4 Missense_Mutation p.R1679H 0.26 probably_damaging(0.947) TCGA-BR-4184-01 4 126369981 126369981 G A FAT4 Missense_Mutation p.A2604T 0.15 probably_damaging(0.995) TCGA-BR-4184-01 4 126412402 126412402 G T FAT4 Missense_Mutation p.D4809Y 0.10 probably_damaging(0.998) TCGA-BR-4184-01 4 129127673 129127674 - A LARP1B Frame_Shift_Ins p.D803Rfs*23 0.10 TCGA-BR-4184-01 4 129880822 129880822 T C SCLT1 Missense_Mutation p.Y327C 0.18 deleterious(0.04) probably_damaging(0.956) TCGA-BR-4184-01 4 1326598 1326598 G A MAEA Missense_Mutation p.R237H 0.19 deleterious(0.05) possibly_damaging(0.879) TCGA-BR-4184-01 4 134072314 134072314 C T PCDH10 Missense_Mutation p.A340V 0.24 tolerated(0.7) benign(0.055) TCGA-BR-4184-01 4 134073044 134073044 G T PCDH10 Silent p.G583G 0.22 TCGA-BR-4184-01 4 134073864 134073864 G A PCDH10 Missense_Mutation p.V857I 0.28 tolerated(0.26) benign(0.016) TCGA-BR-4184-01 4 13603266 13603266 C T BOD1L1 Missense_Mutation p.R1753H 0.25 benign(0.01) TCGA-BR-4184-01 4 138452423 138452423 C T PCDH18 Missense_Mutation p.D274N 0.09 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 4 1389402 1389402 C T CRIPAK Missense_Mutation p.A368V 0.20 tolerated(0.59) possibly_damaging(0.682) TCGA-BR-4184-01 4 140262203 140262203 C T NAA15 Nonsense_Mutation p.R128* 0.09 TCGA-BR-4184-01 4 140640939 140640939 G A MAML3 Silent p.G985G 0.13 TCGA-BR-4184-01 4 141313402 141313402 T - CLGN Frame_Shift_Del p.K541Sfs*27 0.22 TCGA-BR-4184-01 4 141543342 141543342 G A TBC1D9 3'UTR 0.32 TCGA-BR-4184-01 4 144359168 144359168 G A GAB1 Missense_Mutation p.A204T 0.26 tolerated(0.54) benign(0.007) TCGA-BR-4184-01 4 146461063 146461063 G A SMAD1 Missense_Mutation p.A170T 0.23 tolerated(0.74) benign(0.21) TCGA-BR-4184-01 4 147561859 147561859 G A POU4F2 Missense_Mutation p.A377T 0.09 deleterious(0.01) possibly_damaging(0.448) TCGA-BR-4184-01 4 149075716 149075716 G A NR3C2 Missense_Mutation p.A784V 0.27 deleterious(0) possibly_damaging(0.82) TCGA-BR-4184-01 4 151336636 151336636 G A LRBA Missense_Mutation p.P2394L 0.10 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 4 151504900 151504900 G A MAB21L2 Missense_Mutation p.R240H 0.25 tolerated(0.5) possibly_damaging(0.671) TCGA-BR-4184-01 4 151520174 151520174 T - LRBA Frame_Shift_Del p.T2011Qfs*11 0.11 TCGA-BR-4184-01 4 152679946 152679946 G A PET112 Missense_Mutation p.A102V 0.29 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 4 152682034 152682034 G A PET112 Missense_Mutation p.S34F 0.26 tolerated_low_confidence(0.3) benign(0.002) TCGA-BR-4184-01 4 15529197 15529197 T - CC2D2A Frame_Shift_Del p.L427Wfs*31 0.16 TCGA-BR-4184-01 4 155460278 155460278 G T PLRG1 Missense_Mutation p.A377D 0.14 deleterious(0.03) possibly_damaging(0.811) TCGA-BR-4184-01 4 155665742 155665742 G A LRAT Silent p.T88T 0.32 TCGA-BR-4184-01 4 156618218 156618218 A C GUCY1A3 Missense_Mutation p.S67R 0.07 tolerated(0.5) benign(0.005) TCGA-BR-4184-01 4 158254497 158254497 C T GRIA2 Missense_Mutation p.P383S 0.24 tolerated(0.16) benign(0.275) TCGA-BR-4184-01 4 159789517 159789517 G A FNIP2 Missense_Mutation p.A577T 0.19 tolerated(0.08) probably_damaging(0.999) TCGA-BR-4184-01 4 159789546 159789546 A G FNIP2 Silent p.T586T 0.33 TCGA-BR-4184-01 4 160265202 160265202 G A RAPGEF2 Missense_Mutation p.R929Q 0.28 tolerated(0.16) benign(0.029) TCGA-BR-4184-01 4 160275010 160275010 C T RAPGEF2 Missense_Mutation p.A1327V 0.08 tolerated_low_confidence(0.38) possibly_damaging(0.646) TCGA-BR-4184-01 4 16258210 16258210 G A TAPT1-AS1 RNA 0.47 TCGA-BR-4184-01 4 163032431 163032431 G A FSTL5 Nonsense_Mutation p.R40* 0.24 TCGA-BR-4184-01 4 164246412 164246412 T - NPY1R 3'UTR 0.14 TCGA-BR-4184-01 4 164393888 164393888 G A TKTL2 Silent p.G333G 0.18 TCGA-BR-4184-01 4 164394215 164394215 G T TKTL2 Silent p.A224A 0.22 TCGA-BR-4184-01 4 169232425 169232425 G - DDX60 5'UTR 0.20 TCGA-BR-4184-01 4 169433100 169433100 A G PALLD Missense_Mutation p.S149G 0.26 tolerated(0.44) benign(0) TCGA-BR-4184-01 4 170913308 170913308 C T MFAP3L Missense_Mutation p.V151I 0.19 tolerated(1) benign(0.005) TCGA-BR-4184-01 4 170994374 170994375 - T AADAT Frame_Shift_Ins p.N189Kfs*23 0.10 TCGA-BR-4184-01 4 177041100 177041100 G A WDR17 Nonsense_Mutation p.W154* 0.20 TCGA-BR-4184-01 4 177105847 177105847 A G SPATA4 3'UTR 0.31 TCGA-BR-4184-01 4 177105883 177105883 G A SPATA4 3'UTR 0.27 TCGA-BR-4184-01 4 177136833 177136833 C T ASB5 Missense_Mutation p.S303N 0.26 tolerated(0.49) benign(0.001) TCGA-BR-4184-01 4 183245190 183245190 G A TENM3 Missense_Mutation p.R6H 0.26 tolerated_low_confidence(0.07) possibly_damaging(0.522) TCGA-BR-4184-01 4 183603050 183603050 A G TENM3 Missense_Mutation p.N640D 0.13 tolerated(0.65) benign(0.007) TCGA-BR-4184-01 4 184567670 184567670 G C RWDD4 Missense_Mutation p.R168G 0.09 deleterious(0) probably_damaging(0.962) TCGA-BR-4184-01 4 185039015 185039015 C T ENPP6 Missense_Mutation p.R191H 0.18 deleterious(0.02) probably_damaging(0.984) TCGA-BR-4184-01 4 185339814 185339814 G A IRF2 Missense_Mutation p.A79V 0.33 deleterious(0) probably_damaging(0.968) TCGA-BR-4184-01 4 186083859 186083859 C T KIAA1430 3'UTR 0.44 TCGA-BR-4184-01 4 186288347 186288347 C T LRP2BP Missense_Mutation p.R344H 0.24 tolerated(0.85) benign(0) TCGA-BR-4184-01 4 187086544 187086544 C T FAM149A Missense_Mutation p.R364W 0.23 tolerated(0.05) benign(0.261) TCGA-BR-4184-01 4 187120119 187120119 A G CYP4V2 Missense_Mutation p.E228G 0.26 tolerated(0.09) benign(0.022) TCGA-BR-4184-01 4 187172953 187172953 C T KLKB1 Missense_Mutation p.A361V 0.18 tolerated(0.36) benign(0.012) TCGA-BR-4184-01 4 187454839 187454839 T - MTNR1A 3'UTR 0.22 TCGA-BR-4184-01 4 187540638 187540638 G A FAT1 Missense_Mutation p.P2368S 0.30 probably_damaging(0.983) TCGA-BR-4184-01 4 187540995 187540995 C T FAT1 Missense_Mutation p.A2249T 0.08 probably_damaging(0.98) TCGA-BR-4184-01 4 187630114 187630114 C T FAT1 Missense_Mutation p.A290T 0.07 benign(0.433) TCGA-BR-4184-01 4 20570602 20570602 A G SLIT2 Silent p.T1021T 0.19 TCGA-BR-4184-01 4 20597356 20597356 C T SLIT2 Silent p.C1073C 0.22 TCGA-BR-4184-01 4 25270822 25270822 T C PI4K2B Silent p.G423G 0.07 TCGA-BR-4184-01 4 25769175 25769176 AG - SEL1L3 Frame_Shift_Del p.S939Cfs*50 0.13 TCGA-BR-4184-01 4 26407807 26407807 C T RBPJ Nonsense_Mutation p.R37* 0.19 TCGA-BR-4184-01 4 26431567 26431567 C T RBPJ Silent p.G325G 0.20 TCGA-BR-4184-01 4 27019446 27019446 G A STIM2 Missense_Mutation p.A543T 0.25 tolerated_low_confidence(0.35) benign(0.002) TCGA-BR-4184-01 4 2746482 2746482 G A TNIP2 Missense_Mutation p.A283V 0.36 tolerated(0.2) benign(0.006) TCGA-BR-4184-01 4 2933868 2933868 C T MFSD10 Missense_Mutation p.A236T 0.45 tolerated(0.97) benign(0.004) TCGA-BR-4184-01 4 2934476 2934476 C T MFSD10 Missense_Mutation p.A128T 0.25 tolerated(0.06) possibly_damaging(0.527) TCGA-BR-4184-01 4 30723444 30723444 C T PCDH7 Missense_Mutation p.L134F 0.38 deleterious(0.03) possibly_damaging(0.562) TCGA-BR-4184-01 4 30724207 30724207 G A PCDH7 Missense_Mutation p.R388H 0.30 tolerated(0.06) probably_damaging(0.985) TCGA-BR-4184-01 4 30724342 30724342 C T PCDH7 Missense_Mutation p.A433V 0.11 deleterious(0.01) benign(0.041) TCGA-BR-4184-01 4 30725052 30725052 C T PCDH7 Missense_Mutation p.R670W 0.28 deleterious(0) possibly_damaging(0.827) TCGA-BR-4184-01 4 30732378 30732378 C T PCDH7 Intron 0.29 TCGA-BR-4184-01 4 3318578 3318578 C T RGS12 Silent p.N227N 0.17 TCGA-BR-4184-01 4 3319346 3319346 C - RGS12 Frame_Shift_Del p.P485Hfs*14 0.29 TCGA-BR-4184-01 4 3519827 3519827 G A LRPAP1 Missense_Mutation p.R229C 0.15 deleterious(0.01) possibly_damaging(0.907) TCGA-BR-4184-01 4 36085059 36085059 T C ARAP2 Missense_Mutation p.D1480G 0.26 deleterious(0) benign(0.263) TCGA-BR-4184-01 4 36179566 36179566 C T ARAP2 Silent p.S580S 0.18 TCGA-BR-4184-01 4 37651073 37651073 C T RELL1 Silent p.S46S 0.10 TCGA-BR-4184-01 4 38907188 38907188 G A FAM114A1 Missense_Mutation p.R161Q 0.23 tolerated(0.28) probably_damaging(0.994) TCGA-BR-4184-01 4 39278679 39278679 A G WDR19 Silent p.P1252P 0.17 TCGA-BR-4184-01 4 39290444 39290444 C T RFC1 Silent p.K1128K 0.22 TCGA-BR-4184-01 4 39929664 39929664 G A PDS5A Missense_Mutation p.R87C 0.20 deleterious(0) probably_damaging(0.997) TCGA-BR-4184-01 4 40104327 40104327 G A N4BP2 Missense_Mutation p.A288T 0.09 tolerated(0.59) benign(0.007) TCGA-BR-4184-01 4 40245073 40245073 C T RHOH Missense_Mutation p.R23C 0.33 tolerated(0.06) probably_damaging(0.998) TCGA-BR-4184-01 4 40440533 40440533 G A RBM47 Silent p.R126R 0.18 TCGA-BR-4184-01 4 41266152 41266152 G A UCHL1 Missense_Mutation p.A187T 0.29 tolerated(0.71) benign(0) TCGA-BR-4184-01 4 41615101 41615101 G A LIMCH1 Intron 0.27 TCGA-BR-4184-01 4 41664914 41664914 G A LIMCH1 Silent p.Q683Q 0.22 TCGA-BR-4184-01 4 41668613 41668613 G A LIMCH1 Silent p.T724T 0.24 TCGA-BR-4184-01 4 41984291 41984291 C T DCAF4L1 Missense_Mutation p.A161V 0.25 deleterious(0.01) possibly_damaging(0.848) TCGA-BR-4184-01 4 436305 436305 C T ZNF721 Missense_Mutation p.A651T 0.11 tolerated(0.43) benign(0.006) TCGA-BR-4184-01 4 436306 436306 A G ZNF721 Silent p.F650F 0.20 TCGA-BR-4184-01 4 4419079 4419079 C T NSG1 Missense_Mutation p.R159C 0.24 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 4 46967169 46967169 C T GABRA4 Missense_Mutation p.A318T 0.28 deleterious(0.02) probably_damaging(1) TCGA-BR-4184-01 4 47939172 47939172 T - CNGA1 Frame_Shift_Del p.T516Qfs*8 0.20 TCGA-BR-4184-01 4 48591779 48591779 C T FRYL Silent p.E541E 0.26 TCGA-BR-4184-01 4 48604083 48604083 A - FRYL Frame_Shift_Del p.L330* 0.33 TCGA-BR-4184-01 4 517475 517475 G A PIGG Silent p.G614G 0.30 TCGA-BR-4184-01 4 52765528 52765528 C T DCUN1D4 Missense_Mutation p.A200V 0.19 deleterious(0) probably_damaging(0.998) TCGA-BR-4184-01 4 52895985 52895985 G A SGCB Silent p.G96G 0.12 TCGA-BR-4184-01 4 53494163 53494163 G A USP46 Silent p.G95G 0.31 TCGA-BR-4184-01 4 53773693 53773693 G A SCFD2 Silent p.S591S 0.29 TCGA-BR-4184-01 4 54364904 54364904 G A LNX1 Silent p.S294S 0.28 TCGA-BR-4184-01 4 5458606 5458606 T C STK32B Missense_Mutation p.Y247H 0.35 deleterious(0.03) probably_damaging(0.999) TCGA-BR-4184-01 4 5527158 5527158 G A C4orf6 Missense_Mutation p.R34H 0.32 benign(0) TCGA-BR-4184-01 4 57180790 57180790 G A KIAA1211 Silent p.Q374Q 0.50 TCGA-BR-4184-01 4 57798266 57798266 G A REST Missense_Mutation p.R1081H 0.09 deleterious(0) probably_damaging(0.991) TCGA-BR-4184-01 4 57889686 57889686 C T POLR2B Silent p.G902G 0.22 TCGA-BR-4184-01 4 5803721 5803721 C T EVC Silent p.S783S 0.40 TCGA-BR-4184-01 4 5838577 5838577 G A CRMP1 Missense_Mutation p.A456V 0.22 deleterious(0.01) probably_damaging(0.982) TCGA-BR-4184-01 4 62598873 62598873 G C LPHN3 Missense_Mutation p.A266P 0.22 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 4 6374363 6374363 C T PPP2R2C Missense_Mutation p.G171D 0.24 deleterious(0.02) possibly_damaging(0.522) TCGA-BR-4184-01 4 68380247 68380247 C T CENPC Missense_Mutation p.R330H 0.13 tolerated(0.16) benign(0.41) TCGA-BR-4184-01 4 69180004 69180004 C T YTHDC1 Missense_Mutation p.R666H 0.20 deleterious(0) possibly_damaging(0.818) TCGA-BR-4184-01 4 69512908 69512908 C T UGT2B15 Missense_Mutation p.A503T 0.27 tolerated(0.17) possibly_damaging(0.458) TCGA-BR-4184-01 4 69817137 69817137 A - UGT2A3 Frame_Shift_Del p.F114Lfs*4 0.22 TCGA-BR-4184-01 4 70146222 70146222 G T UGT2B28 Missense_Mutation p.A2S 0.06 tolerated_low_confidence(1) benign(0.001) TCGA-BR-4184-01 4 70351060 70351060 G A UGT2B4 Silent p.G392G 0.25 TCGA-BR-4184-01 4 70360986 70360986 C T UGT2B4 Missense_Mutation p.M198I 0.25 tolerated(0.08) benign(0.013) TCGA-BR-4184-01 4 7056185 7056185 G A TADA2B Missense_Mutation p.A223T 0.09 deleterious(0.01) possibly_damaging(0.475) TCGA-BR-4184-01 4 7056791 7056791 G A TADA2B 3'UTR 0.28 TCGA-BR-4184-01 4 72631188 72631188 C T GC Missense_Mutation p.C164Y 0.22 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 4 72994441 72994441 G A NPFFR2 Missense_Mutation p.A147T 0.22 tolerated(0.1) benign(0.125) TCGA-BR-4184-01 4 74017203 74017203 C T ANKRD17 Missense_Mutation p.A425T 0.15 probably_damaging(0.999) TCGA-BR-4184-01 4 74280753 74280753 T - ALB Frame_Shift_Del p.L355Cfs*17 0.21 TCGA-BR-4184-01 4 74313372 74313372 A - AFP Frame_Shift_Del p.N348Ifs*22 0.26 TCGA-BR-4184-01 4 74318231 74318231 C T AFP Silent p.S514S 0.18 TCGA-BR-4184-01 4 7435640 7435640 G A PSAPL1 Missense_Mutation p.R323C 0.21 deleterious(0) probably_damaging(0.984) TCGA-BR-4184-01 4 77234254 77234254 G A CCDC158 3'UTR 0.31 TCGA-BR-4184-01 4 77659960 77659960 C T SHROOM3 Missense_Mutation p.R212W 0.25 deleterious(0) possibly_damaging(0.877) TCGA-BR-4184-01 4 78652648 78652648 G A CNOT6L Missense_Mutation p.A306V 0.27 deleterious(0.01) probably_damaging(1) TCGA-BR-4184-01 4 7873806 7873806 T C AFAP1 Intron 0.31 TCGA-BR-4184-01 4 79188442 79188442 G A FRAS1 Silent p.V279V 0.18 TCGA-BR-4184-01 4 79791958 79791958 G A BMP2K Missense_Mutation p.G418D 0.11 deleterious_low_confidence(0.03) possibly_damaging(0.644) TCGA-BR-4184-01 4 79841732 79841732 T C PAQR3 Silent p.R299R 0.25 TCGA-BR-4184-01 4 80906003 80906003 A T ANTXR2 Silent p.P352P 0.32 TCGA-BR-4184-01 4 82061809 82061810 - T PRKG2 Frame_Shift_Ins p.N474Kfs*2 0.25 TCGA-BR-4184-01 4 8230088 8230088 C T SH3TC1 Silent p.A889A 0.24 TCGA-BR-4184-01 4 8233879 8233879 G A SH3TC1 Missense_Mutation p.E1043K 0.31 deleterious(0.02) probably_damaging(0.999) TCGA-BR-4184-01 4 83350541 83350541 A G HNRNPDL Silent p.A101A 0.23 TCGA-BR-4184-01 4 83381193 83381193 G A ENOPH1 Missense_Mutation p.A236T 0.11 deleterious(0.04) benign(0.013) TCGA-BR-4184-01 4 8368787 8368787 G A ACOX3 Silent p.G668G 0.35 TCGA-BR-4184-01 4 83719512 83719512 G A SCD5 Missense_Mutation p.A60V 0.32 deleterious(0) benign(0.441) TCGA-BR-4184-01 4 8398744 8398744 C T ACOX3 Missense_Mutation p.A326T 0.25 deleterious(0.02) possibly_damaging(0.78) TCGA-BR-4184-01 4 8416072 8416072 C T ACOX3 Missense_Mutation p.G164S 0.24 deleterious(0) probably_damaging(0.994) TCGA-BR-4184-01 4 85701365 85701365 C T WDFY3 Missense_Mutation p.A1421T 0.24 deleterious(0) probably_damaging(0.993) TCGA-BR-4184-01 4 86474 86474 C A Z95704.2 RNA 0.27 TCGA-BR-4184-01 4 87022260 87022260 C T MAPK10 Silent p.V225V 0.33 TCGA-BR-4184-01 4 871523 871523 G A GAK Missense_Mutation p.A579V 0.40 deleterious(0) possibly_damaging(0.677) TCGA-BR-4184-01 4 87726516 87726516 C A PTPN13 Missense_Mutation p.L2252I 0.18 tolerated(0.06) possibly_damaging(0.466) TCGA-BR-4184-01 4 87808929 87808929 G A C4orf36 Missense_Mutation p.P113L 0.24 deleterious(0) probably_damaging(0.958) TCGA-BR-4184-01 4 88011180 88011180 G A AFF1 Silent p.T383T 0.20 TCGA-BR-4184-01 4 88036259 88036259 G A AFF1 Silent p.P758P 0.09 TCGA-BR-4184-01 4 88986920 88986920 C T PKD2 Silent p.G749G 0.24 TCGA-BR-4184-01 4 89039273 89039273 A C ABCG2 Missense_Mutation p.F277V 0.27 deleterious(0) probably_damaging(0.983) TCGA-BR-4184-01 4 89358921 89358921 A G HERC6 Missense_Mutation p.D848G 0.33 deleterious(0.04) possibly_damaging(0.811) TCGA-BR-4184-01 4 89649680 89649680 C T FAM13A 3'UTR 0.20 TCGA-BR-4184-01 4 90170134 90170134 C T GPRIN3 Silent p.T376T 0.30 TCGA-BR-4184-01 4 95578591 95578591 C T PDLIM5 Missense_Mutation p.A522V 0.24 deleterious(0) probably_damaging(0.995) TCGA-BR-4184-01 4 9784507 9784507 G A DRD5 Missense_Mutation p.R285H 0.31 tolerated(0.09) probably_damaging(0.954) TCGA-BR-4184-01 4 99399869 99399869 G A TSPAN5 Silent p.G181G 0.32 TCGA-BR-4184-01 4 99407956 99407956 A G TSPAN5 Missense_Mutation p.V71A 0.21 deleterious(0) benign(0.12) TCGA-BR-4184-01 4 99960602 99960602 C T METAP1 Nonsense_Mutation p.R140* 0.19 TCGA-BR-4184-01 5 100238558 100238558 C T ST8SIA4 Silent p.T34T 0.24 TCGA-BR-4184-01 5 101592920 101592920 A G SLCO4C1 Silent p.F456F 0.25 TCGA-BR-4184-01 5 102237087 102237087 C T PAM Nonsense_Mutation p.R80* 0.24 TCGA-BR-4184-01 5 102309949 102309949 A - PAM Frame_Shift_Del p.K433Rfs*32 0.31 TCGA-BR-4184-01 5 102474135 102474135 G A PPIP5K2 Missense_Mutation p.R150H 0.23 deleterious(0) probably_damaging(0.916) TCGA-BR-4184-01 5 102891660 102891660 G A NUDT12 Silent p.G312G 0.09 TCGA-BR-4184-01 5 108207070 108207070 G T FER Missense_Mutation p.G224C 0.27 deleterious(0) possibly_damaging(0.866) TCGA-BR-4184-01 5 109125195 109125195 A - MAN2A1 Frame_Shift_Del p.N639Ifs*2 0.12 TCGA-BR-4184-01 5 112137021 112137021 C T APC Missense_Mutation p.R259W 0.29 benign(0.209) TCGA-BR-4184-01 5 112203205 112203205 A - SRP19 Frame_Shift_Del p.G140Efs*40 0.19 TCGA-BR-4184-01 5 112257795 112257795 G A REEP5 Silent p.G31G 0.22 TCGA-BR-4184-01 5 114611203 114611204 TC - CCDC112 Frame_Shift_Del p.K210Sfs*27 0.24 TCGA-BR-4184-01 5 115338603 115338603 G A AQPEP Missense_Mutation p.S631N 0.19 tolerated(0.15) benign(0.01) TCGA-BR-4184-01 5 115783256 115783256 C A SEMA6A Missense_Mutation p.D716Y 0.21 tolerated(0.05) possibly_damaging(0.823) TCGA-BR-4184-01 5 121188112 121188112 G A FTMT Missense_Mutation p.D152N 0.22 tolerated(0.15) benign(0.006) TCGA-BR-4184-01 5 121761189 121761189 A C SNCAIP Missense_Mutation p.N382T 0.21 deleterious(0.04) probably_damaging(0.947) TCGA-BR-4184-01 5 122720714 122720714 A - CEP120 Frame_Shift_Del p.L565* 0.12 TCGA-BR-4184-01 5 122950080 122950080 G A CSNK1G3 Missense_Mutation p.R453H 0.20 deleterious_low_confidence(0.02) benign(0.031) TCGA-BR-4184-01 5 123984239 123984239 C T ZNF608 Missense_Mutation p.S613N 0.14 tolerated(0.2) probably_damaging(0.986) TCGA-BR-4184-01 5 126140574 126140574 A - LMNB1 Frame_Shift_Del p.S158Vfs*2 0.25 TCGA-BR-4184-01 5 1264611 1264611 C T TERT Silent p.T917T 0.25 TCGA-BR-4184-01 5 126755870 126755870 C T MEGF10 Missense_Mutation p.R521C 0.32 deleterious(0.01) possibly_damaging(0.518) TCGA-BR-4184-01 5 127668686 127668686 C T FBN2 Missense_Mutation p.M1380I 0.08 tolerated(0.21) benign(0.021) TCGA-BR-4184-01 5 127685073 127685073 G A FBN2 Silent p.G985G 0.21 TCGA-BR-4184-01 5 128448733 128448733 A G ISOC1 3'UTR 0.15 TCGA-BR-4184-01 5 130764881 130764881 G A CTC-432M15.3 Silent p.D1548D 0.12 TCGA-BR-4184-01 5 131534590 131534590 C T P4HA2 Silent p.P429P 0.19 TCGA-BR-4184-01 5 131647916 131647916 C T SLC22A4 Silent p.G152G 0.07 TCGA-BR-4184-01 5 132052617 132052617 T A KIF3A Missense_Mutation p.I226F 0.27 deleterious(0) possibly_damaging(0.864) TCGA-BR-4184-01 5 132086668 132086668 G A CCNI2 Silent p.T251T 0.18 TCGA-BR-4184-01 5 133537696 133537696 C T PPP2CA Missense_Mutation p.R110H 0.20 deleterious(0) benign(0.015) TCGA-BR-4184-01 5 134782488 134782488 G A C5orf20 Missense_Mutation p.A104V 0.27 tolerated_low_confidence(0.24) possibly_damaging(0.695) TCGA-BR-4184-01 5 135551934 135551934 G A TRPC7 Silent p.Y791Y 0.16 TCGA-BR-4184-01 5 137454523 137454523 T G NME5 Missense_Mutation p.K180T 0.09 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 5 137527970 137527970 G A CDC23 Missense_Mutation p.A425V 0.28 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 5 137621809 137621809 G A CDC25C Missense_Mutation p.R392C 0.18 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 5 137765964 137765964 C - KDM3B Frame_Shift_Del p.P1642Lfs*36 0.28 TCGA-BR-4184-01 5 137776765 137776765 C T REEP2 Silent p.N31N 0.25 TCGA-BR-4184-01 5 137848611 137848611 G A ETF1 Missense_Mutation p.R192C 0.26 deleterious(0.01) probably_damaging(0.91) TCGA-BR-4184-01 5 13811916 13811916 C T DNAH5 Missense_Mutation p.R2416H 0.12 possibly_damaging(0.522) TCGA-BR-4184-01 5 13891148 13891148 C T DNAH5 Silent p.T838T 0.32 TCGA-BR-4184-01 5 139060723 139060723 G A CXXC5 Silent p.Q205Q 0.26 TCGA-BR-4184-01 5 139930355 139930355 G A SRA1 Missense_Mutation p.A214V 0.10 tolerated(0.22) benign(0.185) TCGA-BR-4184-01 5 139947773 139947773 C T SLC35A4 3'UTR 0.32 TCGA-BR-4184-01 5 140021848 140021848 G A TMCO6 Intron 0.16 TCGA-BR-4184-01 5 140085213 140085213 G A ZMAT2 Missense_Mutation p.A158T 0.26 tolerated(0.27) benign(0.185) TCGA-BR-4184-01 5 140167729 140167729 G A PCDHA1 Silent p.A618A 0.38 TCGA-BR-4184-01 5 140175845 140175845 G A PCDHA2 Silent p.S432S 0.21 TCGA-BR-4184-01 5 140201540 140201540 G A PCDHA5 Silent p.P60P 0.26 TCGA-BR-4184-01 5 140222549 140222549 A G PCDHA8 Missense_Mutation p.N548S 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.465) TCGA-BR-4184-01 5 140230509 140230509 T - PCDHA9 Intron 0.27 TCGA-BR-4184-01 5 140237080 140237080 G A PCDHA10 Missense_Mutation p.A483T 0.26 tolerated_low_confidence(0.05) benign(0.248) TCGA-BR-4184-01 5 140237425 140237425 G A PCDHA10 Missense_Mutation p.A598T 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.732) TCGA-BR-4184-01 5 140242246 140242246 A T AC005609.1 3'UTR 0.18 TCGA-BR-4184-01 5 140242884 140242884 G A AC005609.1 Missense_Mutation p.A31V 0.22 deleterious_low_confidence(0) possibly_damaging(0.695) TCGA-BR-4184-01 5 140250178 140250178 G A PCDHA11 Missense_Mutation p.R497Q 0.37 deleterious_low_confidence(0.03) benign(0.341) TCGA-BR-4184-01 5 140256730 140256730 A T PCDHA12 Missense_Mutation p.E558V 0.22 deleterious_low_confidence(0) benign(0.079) TCGA-BR-4184-01 5 140261998 140261998 G A PCDHA13 Missense_Mutation p.A49T 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.843) TCGA-BR-4184-01 5 140307066 140307066 G A PCDHAC1 Missense_Mutation p.A197T 0.26 tolerated(0.26) benign(0.112) TCGA-BR-4184-01 5 140347212 140347212 C T PCDHAC2 Silent p.G287G 0.23 TCGA-BR-4184-01 5 140475246 140475246 G A PCDHB2 Missense_Mutation p.R291H 0.07 tolerated_low_confidence(0.25) benign(0.235) TCGA-BR-4184-01 5 140476325 140476325 G A PCDHB2 Missense_Mutation p.E651K 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.7) TCGA-BR-4184-01 5 140481651 140481651 T C PCDHB3 Missense_Mutation p.V473A 0.28 deleterious_low_confidence(0) benign(0.316) TCGA-BR-4184-01 5 140481683 140481683 G A PCDHB3 Missense_Mutation p.A484T 0.34 deleterious_low_confidence(0) possibly_damaging(0.879) TCGA-BR-4184-01 5 140554671 140554671 G A PCDHB7 Missense_Mutation p.C752Y 0.09 tolerated_low_confidence(0.05) benign(0.101) TCGA-BR-4184-01 5 140559017 140559017 G A PCDHB8 Missense_Mutation p.A468T 0.10 deleterious_low_confidence(0) benign(0.36) TCGA-BR-4184-01 5 140563922 140563922 G A PCDHB16 Silent p.S596S 0.39 TCGA-BR-4184-01 5 140581476 140581476 C T PCDHB11 Missense_Mutation p.A710V 0.10 tolerated_low_confidence(0.13) benign(0.002) TCGA-BR-4184-01 5 140581505 140581505 G A PCDHB11 Missense_Mutation p.A720T 0.08 tolerated_low_confidence(0.14) benign(0.031) TCGA-BR-4184-01 5 140595514 140595514 C T PCDHB13 Missense_Mutation p.L607F 0.27 deleterious_low_confidence(0.03) possibly_damaging(0.495) TCGA-BR-4184-01 5 140604673 140604673 C T PCDHB14 Silent p.G532G 0.11 TCGA-BR-4184-01 5 140604751 140604751 G A PCDHB14 Silent p.S558S 0.20 TCGA-BR-4184-01 5 140605138 140605138 C T PCDHB14 Silent p.T687T 0.20 TCGA-BR-4184-01 5 140615770 140615770 C T PCDHB18 RNA 0.17 TCGA-BR-4184-01 5 140699196 140699196 G A TAF7 Missense_Mutation p.P139L 0.18 deleterious(0) probably_damaging(0.995) TCGA-BR-4184-01 5 140710396 140710396 G A PCDHGA1 Missense_Mutation p.A49T 0.29 deleterious_low_confidence(0.03) possibly_damaging(0.474) TCGA-BR-4184-01 5 140712131 140712131 G A PCDHGA1 Missense_Mutation p.R627H 0.10 deleterious_low_confidence(0.01) benign(0.344) TCGA-BR-4184-01 5 140745824 140745824 G A PCDHGA5 Missense_Mutation p.V643M 0.18 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-BR-4184-01 5 140746261 140746261 C T PCDHGA5 Silent p.S788S 0.14 TCGA-BR-4184-01 5 140762959 140762959 A G PCDHGA7 Missense_Mutation p.N165D 0.19 deleterious_low_confidence(0) probably_damaging(1) TCGA-BR-4184-01 5 140784212 140784212 C T PCDHGA9 Missense_Mutation p.P565S 0.09 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-BR-4184-01 5 140784685 140784685 G A PCDHGA9 Silent p.S722S 0.28 TCGA-BR-4184-01 5 140789114 140789114 G A PCDHGB6 Missense_Mutation p.A449T 0.23 tolerated(0.07) benign(0.133) TCGA-BR-4184-01 5 140802964 140802964 C - PCDHGA11 Frame_Shift_Del p.R724Afs*19 0.24 TCGA-BR-4184-01 5 140810542 140810542 G A PCDHGA12 Silent p.T72T 0.17 TCGA-BR-4184-01 5 140812003 140812003 G A PCDHGA12 Silent p.A559A 0.27 TCGA-BR-4184-01 5 140857013 140857013 C T PCDHGC3 Missense_Mutation p.R444C 0.22 tolerated(0.17) possibly_damaging(0.606) TCGA-BR-4184-01 5 140905627 140905628 CT - DIAPH1 Frame_Shift_Del p.E1184Afs*11 0.24 TCGA-BR-4184-01 5 1409199 1409199 G A SLC6A3 Silent p.A480A 0.38 TCGA-BR-4184-01 5 141005313 141005313 G A HDAC3 Missense_Mutation p.A333V 0.24 deleterious(0) possibly_damaging(0.467) TCGA-BR-4184-01 5 14367023 14367023 G A TRIO Missense_Mutation p.A937T 0.19 probably_damaging(0.998) TCGA-BR-4184-01 5 143853254 143853254 C T KCTD16 Silent p.C288C 0.20 TCGA-BR-4184-01 5 14401091 14401091 C T TRIO Missense_Mutation p.T1545I 0.19 probably_damaging(0.995) TCGA-BR-4184-01 5 145631338 145631338 G A RBM27 Silent p.P448P 0.32 TCGA-BR-4184-01 5 146785170 146785170 C T DPYSL3 Intron 0.23 TCGA-BR-4184-01 5 14693162 14693162 C T FAM105B 3'UTR 0.24 TCGA-BR-4184-01 5 147012252 147012252 T C JAKMIP2 Silent p.L589L 0.10 TCGA-BR-4184-01 5 147889355 147889355 C A HTR4 Missense_Mutation p.S247I 0.21 tolerated(0.25) benign(0.255) TCGA-BR-4184-01 5 148745609 148745609 C T PCYOX1L Missense_Mutation p.A192V 0.34 tolerated(0.27) benign(0.124) TCGA-BR-4184-01 5 148747580 148747580 C T PCYOX1L Missense_Mutation p.A283V 0.09 tolerated(0.47) benign(0.084) TCGA-BR-4184-01 5 148754023 148754023 C T IL17B Missense_Mutation p.R151H 0.15 deleterious(0) probably_damaging(0.998) TCGA-BR-4184-01 5 149206304 149206304 C T PPARGC1B Silent p.D107D 0.16 TCGA-BR-4184-01 5 149242740 149242740 G A PDE6A Silent p.Y816Y 0.24 TCGA-BR-4184-01 5 149360038 149360038 C T SLC26A2 Silent p.F294F 0.20 TCGA-BR-4184-01 5 149439266 149439266 C T CSF1R Missense_Mutation p.R710H 0.08 tolerated(0.12) benign(0.021) TCGA-BR-4184-01 5 149441338 149441338 C T CSF1R Silent p.T567T 0.16 TCGA-BR-4184-01 5 149447825 149447825 C T CSF1R Missense_Mutation p.A527T 0.20 tolerated(0.15) benign(0.271) TCGA-BR-4184-01 5 149459840 149459840 C T CSF1R Missense_Mutation p.A123T 0.32 tolerated(0.11) benign(0.053) TCGA-BR-4184-01 5 149501454 149501454 T C PDGFRB Missense_Mutation p.Y778C 0.13 tolerated(0.08) benign(0.078) TCGA-BR-4184-01 5 149631348 149631348 G A CAMK2A Missense_Mutation p.R220C 0.18 deleterious_low_confidence(0) probably_damaging(0.932) TCGA-BR-4184-01 5 149775932 149775932 C T TCOF1 Missense_Mutation p.A1290V 0.30 deleterious(0.04) benign(0.138) TCGA-BR-4184-01 5 149777957 149777957 A - TCOF1 Frame_Shift_Del p.K1463Rfs*? 0.21 TCGA-BR-4184-01 5 149907766 149907766 G A NDST1 Missense_Mutation p.R305H 0.15 deleterious(0.03) probably_damaging(0.969) TCGA-BR-4184-01 5 150028582 150028582 G - SYNPO Frame_Shift_Del p.G494Afs*11 0.11 TCGA-BR-4184-01 5 150489327 150489327 C T ANXA6 Silent p.P557P 0.31 TCGA-BR-4184-01 5 150509077 150509077 C T ANXA6 Missense_Mutation p.R270Q 0.50 tolerated(0.06) benign(0.001) TCGA-BR-4184-01 5 150897291 150897291 G A FAT2 Missense_Mutation p.R3785W 0.24 benign(0.006) TCGA-BR-4184-01 5 150922506 150922506 G A FAT2 Missense_Mutation p.R2728W 0.21 possibly_damaging(0.773) TCGA-BR-4184-01 5 151043671 151043671 G A SPARC Missense_Mutation p.A287V 0.14 tolerated(0.08) possibly_damaging(0.831) TCGA-BR-4184-01 5 153857252 153857252 C T HAND1 Missense_Mutation p.R106H 0.23 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 5 154292517 154292517 G A GEMIN5 Missense_Mutation p.A646V 0.09 deleterious(0.02) benign(0.178) TCGA-BR-4184-01 5 154393675 154393675 G A KIF4B Missense_Mutation p.A86T 0.09 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 5 156378680 156378680 T C TIMD4 Silent p.T174T 0.06 TCGA-BR-4184-01 5 156900079 156900079 C A NIPAL4 3'UTR 0.24 TCGA-BR-4184-01 5 157159916 157159916 C T THG1L Missense_Mutation p.R78C 0.21 deleterious(0.01) probably_damaging(0.997) TCGA-BR-4184-01 5 159344141 159344141 C T ADRA1B Missense_Mutation p.R77W 0.25 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 5 15936704 15936704 G A FBXL7 Silent p.A295A 0.17 TCGA-BR-4184-01 5 159680757 159680757 G A CCNJL Silent p.A312A 0.30 TCGA-BR-4184-01 5 164028161 164028161 G A CTC-340A15.2 RNA 0.30 TCGA-BR-4184-01 5 16673839 16673839 G A MYO10 Silent p.G1708G 0.32 TCGA-BR-4184-01 5 167645893 167645893 G C TENM2 Missense_Mutation p.G1666A 0.06 tolerated(0.54) benign(0.206) TCGA-BR-4184-01 5 167673925 167673925 C T TENM2 Missense_Mutation p.A1994V 0.07 deleterious(0.05) probably_damaging(0.999) TCGA-BR-4184-01 5 167896158 167896158 G A WWC1 3'UTR 0.27 TCGA-BR-4184-01 5 167944920 167944920 C T RARS Missense_Mutation p.R576W 0.12 deleterious(0.01) probably_damaging(0.968) TCGA-BR-4184-01 5 16818205 16818205 G A MYO10 Silent p.G64G 0.15 TCGA-BR-4184-01 5 169230209 169230209 C T DOCK2 Missense_Mutation p.A901V 0.24 tolerated(1) benign(0) TCGA-BR-4184-01 5 169463553 169463553 A G DOCK2 Missense_Mutation p.Y1220C 0.20 deleterious(0) probably_damaging(0.982) TCGA-BR-4184-01 5 169535053 169535053 G A FOXI1 Missense_Mutation p.G192D 0.32 deleterious(0) probably_damaging(0.997) TCGA-BR-4184-01 5 170833403 170833403 G A NPM1 Intron 0.29 TCGA-BR-4184-01 5 171517345 171517345 T - STK10 Frame_Shift_Del p.T526Pfs*15 0.28 TCGA-BR-4184-01 5 171777377 171777377 G A SH3PXD2B Silent p.D334D 0.25 TCGA-BR-4184-01 5 172537583 172537584 - A CREBRF Frame_Shift_Ins p.L495Tfs*7 0.12 TCGA-BR-4184-01 5 173317732 173317732 G A CPEB4 Silent p.S332S 0.18 TCGA-BR-4184-01 5 173317746 173317747 - T CPEB4 Frame_Shift_Ins p.A339Cfs*20 0.29 TCGA-BR-4184-01 5 173383101 173383101 C T CPEB4 Silent p.G717G 0.20 TCGA-BR-4184-01 5 175306958 175306958 C T CPLX2 Silent p.C105C 0.21 TCGA-BR-4184-01 5 175388288 175388288 C T THOC3 Missense_Mutation p.R260Q 0.30 deleterious(0.04) possibly_damaging(0.591) TCGA-BR-4184-01 5 175388401 175388401 G A THOC3 Silent p.A222A 0.32 TCGA-BR-4184-01 5 175812232 175812233 - C NOP16 Frame_Shift_Ins p.E128Gfs*4 0.28 TCGA-BR-4184-01 5 175919216 175919216 G A FAF2 Silent p.R122R 0.26 TCGA-BR-4184-01 5 176011688 176011688 C T CDHR2 Silent p.N802N 0.28 TCGA-BR-4184-01 5 176638555 176638555 G A NSD1 Missense_Mutation p.R1052H 0.29 deleterious_low_confidence(0.04) possibly_damaging(0.655) TCGA-BR-4184-01 5 176638998 176638998 C T NSD1 Missense_Mutation p.R1200W 0.15 deleterious_low_confidence(0.01) benign(0.328) TCGA-BR-4184-01 5 176696802 176696802 A - NSD1 Frame_Shift_Del p.A1837Lfs*12 0.25 TCGA-BR-4184-01 5 176941755 176941755 G A DDX41 Silent p.C294C 0.39 TCGA-BR-4184-01 5 176965990 176965990 G A FAM193B Silent p.G123G 0.32 TCGA-BR-4184-01 5 177035954 177035954 G A B4GALT7 Missense_Mutation p.R256H 0.08 tolerated(0.06) benign(0.015) TCGA-BR-4184-01 5 178987036 178987036 C T RUFY1 Silent p.C107C 0.22 TCGA-BR-4184-01 5 179228442 179228442 G A MGAT4B Silent p.S165S 0.40 TCGA-BR-4184-01 5 179250014 179250014 T C SQSTM1 Missense_Mutation p.S88P 0.21 tolerated(0.49) benign(0.001) TCGA-BR-4184-01 5 179676011 179676011 G A MAPK9 Missense_Mutation p.A193V 0.12 deleterious(0.01) probably_damaging(0.995) TCGA-BR-4184-01 5 179745956 179745956 G A GFPT2 Silent p.S265S 0.11 TCGA-BR-4184-01 5 179992901 179992901 C T CNOT6 Missense_Mutation p.A214V 0.27 deleterious(0.02) possibly_damaging(0.786) TCGA-BR-4184-01 5 1879729 1879729 G A IRX4 Missense_Mutation p.P209S 0.33 tolerated(0.88) benign(0.212) TCGA-BR-4184-01 5 194842 194842 C T LRRC14B Nonsense_Mutation p.R307* 0.20 TCGA-BR-4184-01 5 205673 205673 G A CCDC127 Silent p.C174C 0.17 TCGA-BR-4184-01 5 21752162 21752162 C T CDH12 Missense_Mutation p.R690H 0.14 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 5 23509190 23509190 G A PRDM9 Silent p.E16E 0.24 TCGA-BR-4184-01 5 24492981 24492981 T A CDH10 Missense_Mutation p.K523N 0.26 deleterious(0.01) possibly_damaging(0.75) TCGA-BR-4184-01 5 24498629 24498629 C A CDH10 Splice_Site p.X465_splice 0.23 TCGA-BR-4184-01 5 24505247 24505247 T A CDH10 Missense_Mutation p.N456I 0.36 deleterious(0) benign(0.002) TCGA-BR-4184-01 5 24535840 24535840 C A CDH10 Missense_Mutation p.Q206H 0.27 tolerated(0.07) probably_damaging(0.974) TCGA-BR-4184-01 5 26885767 26885767 G A CDH9 Missense_Mutation p.T613M 0.14 tolerated(0.09) possibly_damaging(0.828) TCGA-BR-4184-01 5 2748620 2748620 G A IRX2 Missense_Mutation p.A401V 0.21 tolerated(0.21) probably_damaging(0.986) TCGA-BR-4184-01 5 31541102 31541102 G A C5orf22 Missense_Mutation p.G285D 0.20 tolerated(0.71) benign(0.001) TCGA-BR-4184-01 5 31799525 31799525 T C PDZD2 Missense_Mutation p.V57A 0.23 tolerated(0.17) benign(0.015) TCGA-BR-4184-01 5 32712628 32712628 G A NPR3 Missense_Mutation p.R249H 0.16 tolerated(0.17) benign(0.002) TCGA-BR-4184-01 5 33453456 33453456 G A TARS Missense_Mutation p.R164H 0.17 deleterious(0) probably_damaging(0.998) TCGA-BR-4184-01 5 33937066 33937066 C T RXFP3 Missense_Mutation p.A74V 0.31 tolerated(0.18) benign(0.087) TCGA-BR-4184-01 5 33938061 33938061 C T RXFP3 Missense_Mutation p.R406C 0.10 deleterious(0) benign(0.014) TCGA-BR-4184-01 5 34850347 34850347 G T TTC23L Missense_Mutation p.G105W 0.20 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 5 36168477 36168477 G A SKP2 Missense_Mutation p.G200D 0.14 tolerated(0.46) benign(0.002) TCGA-BR-4184-01 5 37006526 37006526 C T NIPBL Missense_Mutation p.A1308V 0.15 tolerated(0.31) probably_damaging(0.95) TCGA-BR-4184-01 5 37064103 37064103 G A NIPBL Intron 0.39 TCGA-BR-4184-01 5 37196023 37196023 C T C5orf42 Missense_Mutation p.A1250T 0.16 tolerated(0.05) benign(0.014) TCGA-BR-4184-01 5 38418215 38418215 C T EGFLAM Silent p.G514G 0.19 TCGA-BR-4184-01 5 39341719 39341719 C T C9 Silent p.V89V 0.23 TCGA-BR-4184-01 5 39388941 39388941 G A DAB2 Missense_Mutation p.A195V 0.11 tolerated(0.06) benign(0.002) TCGA-BR-4184-01 5 40716477 40716477 T - TTC33 Frame_Shift_Del p.S187Vfs*7 0.22 TCGA-BR-4184-01 5 40841408 40841408 T C CARD6 5'UTR 0.25 TCGA-BR-4184-01 5 41000851 41000852 - A MROH2B Frame_Shift_Ins p.A1427Cfs*2 0.36 TCGA-BR-4184-01 5 41927346 41927346 G A FBXO4 Missense_Mutation p.A141T 0.10 tolerated(0.23) benign(0.005) TCGA-BR-4184-01 5 43388544 43388544 C T CCL28 Silent p.E33E 0.11 TCGA-BR-4184-01 5 43494677 43494677 A G C5orf34 Silent p.N393N 0.12 TCGA-BR-4184-01 5 44305128 44305128 G A FGF10 Missense_Mutation p.A199V 0.22 deleterious(0) possibly_damaging(0.736) TCGA-BR-4184-01 5 44811197 44811197 C T MRPS30 Nonsense_Mutation p.R230* 0.20 TCGA-BR-4184-01 5 45267276 45267276 C T HCN1 Silent p.V566V 0.27 TCGA-BR-4184-01 5 453949 453949 C T EXOC3 Missense_Mutation p.R277C 0.18 tolerated(0.24) probably_damaging(0.993) TCGA-BR-4184-01 5 492080 492080 C T SLC9A3 Silent p.A106A 0.28 TCGA-BR-4184-01 5 52096901 52096901 G A PELO Missense_Mutation p.A225T 0.19 deleterious(0) probably_damaging(0.976) TCGA-BR-4184-01 5 53815142 53815142 C T SNX18 Missense_Mutation p.R454C 0.14 deleterious(0) probably_damaging(0.987) TCGA-BR-4184-01 5 5461451 5461451 G A KIAA0947 Silent p.P668P 0.11 TCGA-BR-4184-01 5 5464600 5464600 C T KIAA0947 Missense_Mutation p.A1718V 0.17 deleterious(0) probably_damaging(0.982) TCGA-BR-4184-01 5 56155650 56155650 C T MAP3K1 Nonsense_Mutation p.R248* 0.18 TCGA-BR-4184-01 5 56160643 56160643 G A MAP3K1 Missense_Mutation p.R306H 0.11 deleterious(0) probably_damaging(0.979) TCGA-BR-4184-01 5 56542211 56542211 T C GPBP1 Missense_Mutation p.F195S 0.09 tolerated(0.23) probably_damaging(0.938) TCGA-BR-4184-01 5 58120962 58120962 C T RAB3C Nonsense_Mutation p.R157* 0.26 TCGA-BR-4184-01 5 6337301 6337301 C T CTD-2324F15.2 RNA 0.22 TCGA-BR-4184-01 5 64020298 64020298 T - SREK1IP1 Frame_Shift_Del p.K129Nfs*29 0.17 TCGA-BR-4184-01 5 64886194 64886194 T - TRIM23 3'UTR 0.41 TCGA-BR-4184-01 5 65118709 65118709 C T NLN Missense_Mutation p.A694V 0.26 deleterious(0) probably_damaging(0.989) TCGA-BR-4184-01 5 65349316 65349316 G A ERBB2IP Missense_Mutation p.D724N 0.24 tolerated_low_confidence(0.1) benign(0.003) TCGA-BR-4184-01 5 66396393 66396393 C A MAST4 Missense_Mutation p.P348Q 0.30 possibly_damaging(0.828) TCGA-BR-4184-01 5 66460146 66460146 C T MAST4 Silent p.G1713G 0.35 TCGA-BR-4184-01 5 66460439 66460439 C T MAST4 Missense_Mutation p.S1811F 0.11 probably_damaging(1) TCGA-BR-4184-01 5 67589581 67589620 ATTACATGAATATAACACTCAGTTTCAAGAAAAAAGTCGA TTACATGAATATAACACTCAGTTTCAAGAAAAAAGTC PIK3R1 In_Frame_Del p.K448_R461delinsNYMNITLSFKKKV 0.08 TCGA-BR-4184-01 5 70805292 70805292 C T BDP1 Silent p.S791S 0.09 TCGA-BR-4184-01 5 71016372 71016372 C T CARTPT Missense_Mutation p.A94V 0.18 deleterious(0.01) probably_damaging(0.989) TCGA-BR-4184-01 5 71491738 71491738 G T MAP1B Missense_Mutation p.K852N 0.10 possibly_damaging(0.738) TCGA-BR-4184-01 5 71743088 71743088 G A ZNF366 Missense_Mutation p.R561W 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-BR-4184-01 5 72427511 72427511 C T TMEM171 Missense_Mutation p.A310V 0.24 tolerated(0.37) benign(0.027) TCGA-BR-4184-01 5 73069726 73069726 C T ARHGEF28 Silent p.G174G 0.26 TCGA-BR-4184-01 5 73931937 73931937 T C ENC1 Missense_Mutation p.D125G 0.22 deleterious(0.01) possibly_damaging(0.745) TCGA-BR-4184-01 5 75893291 75893291 C T IQGAP2 Missense_Mutation p.A312V 0.12 tolerated(0.26) benign(0.003) TCGA-BR-4184-01 5 75967720 75967720 G A IQGAP2 Missense_Mutation p.D994N 0.22 tolerated(0.09) benign(0.011) TCGA-BR-4184-01 5 76729078 76729078 G A WDR41 Missense_Mutation p.T421M 0.24 deleterious(0) probably_damaging(0.977) TCGA-BR-4184-01 5 7831937 7831937 C T C5orf49 3'UTR 0.13 TCGA-BR-4184-01 5 78379533 78379533 C T BHMT2 Silent p.G288G 0.23 TCGA-BR-4184-01 5 78415085 78415085 G A BHMT Missense_Mutation p.R57H 0.10 deleterious(0.03) benign(0.177) TCGA-BR-4184-01 5 79357547 79357547 G A THBS4 Silent p.V339V 0.09 TCGA-BR-4184-01 5 79498704 79498704 C T SERINC5 Splice_Site p.X65_splice 0.08 TCGA-BR-4184-01 5 79733039 79733039 G A ZFYVE16 Missense_Mutation p.D179N 0.12 tolerated(0.16) benign(0.124) TCGA-BR-4184-01 5 80548572 80548572 G A CKMT2 Missense_Mutation p.A71T 0.33 tolerated(0.17) benign(0.015) TCGA-BR-4184-01 5 82406986 82406986 T C XRCC4 Silent p.C93C 0.28 TCGA-BR-4184-01 5 85592175 85592175 C T NBPF22P RNA 0.37 TCGA-BR-4184-01 5 88100421 88100421 G A MEF2C Silent p.I84I 0.10 TCGA-BR-4184-01 5 90667168 90667169 AG - ARRDC3 3'UTR 0.10 TCGA-BR-4184-01 5 92929574 92929574 G A NR2F1 3'UTR 0.38 TCGA-BR-4184-01 5 94267673 94267673 C T MCTP1 Nonsense_Mutation p.W399* 0.20 TCGA-BR-4184-01 5 95072640 95072640 C T RHOBTB3 Silent p.G92G 0.22 TCGA-BR-4184-01 5 95150603 95150603 C A GLRX 3'UTR 0.40 TCGA-BR-4184-01 5 95728946 95728946 G A PCSK1 Missense_Mutation p.A674V 0.26 tolerated_low_confidence(0.05) probably_damaging(0.998) TCGA-BR-4184-01 5 98232112 98232112 G T CHD1 Missense_Mutation p.L510I 0.20 deleterious(0.03) probably_damaging(0.997) TCGA-BR-4184-01 5 98240797 98240797 G A CHD1 Missense_Mutation p.S20L 0.24 deleterious_low_confidence(0) benign(0.32) TCGA-BR-4184-01 6 100062403 100062403 G A PRDM13 Missense_Mutation p.R631H 0.29 deleterious(0) probably_damaging(0.995) TCGA-BR-4184-01 6 100403950 100403950 G T MCHR2 Missense_Mutation p.A25D 0.09 tolerated(0.39) benign(0.002) TCGA-BR-4184-01 6 100897563 100897563 C T SIM1 Missense_Mutation p.G121R 0.22 deleterious(0) probably_damaging(0.994) TCGA-BR-4184-01 6 101091910 101091910 T - ASCC3 Frame_Shift_Del p.K1243Nfs*48 0.24 TCGA-BR-4184-01 6 101109778 101109778 C T ASCC3 Silent p.T869T 0.15 TCGA-BR-4184-01 6 101215064 101215064 C T ASCC3 Missense_Mutation p.R518H 0.12 tolerated(0.09) benign(0.081) TCGA-BR-4184-01 6 101847167 101847167 T A GRIK2 Missense_Mutation p.F5Y 0.12 tolerated_low_confidence(0.71) benign(0.001) TCGA-BR-4184-01 6 102074360 102074360 T C GRIK2 Missense_Mutation p.I130T 0.12 deleterious(0) probably_damaging(0.959) TCGA-BR-4184-01 6 102503338 102503338 G - GRIK2 Frame_Shift_Del p.V817Ffs*46 0.16 TCGA-BR-4184-01 6 105192433 105192433 T - HACE1 Frame_Shift_Del p.N799Ifs*22 0.17 TCGA-BR-4184-01 6 105244857 105244857 C T HACE1 Missense_Mutation p.A221T 0.13 deleterious(0) possibly_damaging(0.75) TCGA-BR-4184-01 6 105609713 105609713 C A POPDC3 Missense_Mutation p.E24D 0.23 tolerated(1) benign(0.001) TCGA-BR-4184-01 6 105730445 105730445 G A PREP Missense_Mutation p.A521V 0.13 tolerated(0.28) benign(0.013) TCGA-BR-4184-01 6 105736746 105736746 A G PREP Silent p.G447G 0.21 TCGA-BR-4184-01 6 10586430 10586430 C T GCNT2 Intron 0.06 TCGA-BR-4184-01 6 106553770 106553770 G A PRDM1 Missense_Mutation p.V579I 0.10 tolerated(0.33) benign(0.172) TCGA-BR-4184-01 6 107956476 107956476 G A SOBP Missense_Mutation p.A810T 0.28 tolerated(0.12) possibly_damaging(0.823) TCGA-BR-4184-01 6 10809075 10809075 C T MAK Silent p.Q153Q 0.16 TCGA-BR-4184-01 6 108984700 108984700 C T FOXO3 Missense_Mutation p.R222W 0.20 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 6 10924769 10924769 G A SYCP2L Silent p.K371K 0.13 TCGA-BR-4184-01 6 10924823 10924823 G A SYCP2L Silent p.L389L 0.18 TCGA-BR-4184-01 6 109315692 109315692 T - SESN1 Frame_Shift_Del p.R365Efs*59 0.21 TCGA-BR-4184-01 6 10995330 10995330 T - ELOVL2 Frame_Shift_Del p.T139Rfs*23 0.12 TCGA-BR-4184-01 6 110421800 110421800 C T WASF1 Silent p.L535L 0.21 TCGA-BR-4184-01 6 110746270 110746270 C T SLC22A16 Missense_Mutation p.A514T 0.18 tolerated(0.05) probably_damaging(0.964) TCGA-BR-4184-01 6 111527826 111527826 A - SLC16A10 Frame_Shift_Del p.N327Ifs*30 0.10 TCGA-BR-4184-01 6 112397206 112397206 T - TUBE1 Frame_Shift_Del p.K249Sfs*10 0.18 TCGA-BR-4184-01 6 112460964 112460964 G A LAMA4 Missense_Mutation p.P1034S 0.19 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 6 112508790 112508790 G A LAMA4 Silent p.C276C 0.14 TCGA-BR-4184-01 6 11306258 11306258 G A NEDD9 5'UTR 0.10 TCGA-BR-4184-01 6 114266574 114266574 G T HDAC2 Missense_Mutation p.P348H 0.07 deleterious(0) benign(0.028) TCGA-BR-4184-01 6 114379185 114379185 C T HS3ST5 Missense_Mutation p.A93T 0.25 tolerated(0.6) benign(0.2) TCGA-BR-4184-01 6 114379236 114379236 C T HS3ST5 Missense_Mutation p.A76T 0.16 tolerated(0.43) benign(0.005) TCGA-BR-4184-01 6 116574209 116574209 G A TSPYL4 Silent p.G321G 0.11 TCGA-BR-4184-01 6 116757490 116757490 A G DSE Missense_Mutation p.D620G 0.16 deleterious(0.04) probably_damaging(0.998) TCGA-BR-4184-01 6 117053387 117053389 AGA - KPNA5 In_Frame_Del p.E509del 0.23 TCGA-BR-4184-01 6 118475668 118475668 C A SLC35F1 Silent p.G78G 0.20 TCGA-BR-4184-01 6 118606424 118606424 G A SLC35F1 Missense_Mutation p.A309T 0.05 deleterious(0) probably_damaging(0.996) TCGA-BR-4184-01 6 118790423 118790423 C T CEP85L Missense_Mutation p.G692D 0.12 tolerated(0.64) benign(0.004) TCGA-BR-4184-01 6 118801652 118801652 G A CEP85L Silent p.C593C 0.11 TCGA-BR-4184-01 6 119238739 119238739 G A MCM9 Silent p.S297S 0.18 TCGA-BR-4184-01 6 121768421 121768421 G A GJA1 Missense_Mutation p.G143D 0.07 deleterious(0.03) benign(0.015) TCGA-BR-4184-01 6 12296243 12296243 G T EDN1 Missense_Mutation p.K194N 0.16 deleterious(0) possibly_damaging(0.602) TCGA-BR-4184-01 6 125379190 125379190 C T RNF217 Missense_Mutation p.R115C 0.16 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 6 125550412 125550412 C T TPD52L1 Missense_Mutation p.A95V 0.10 tolerated(0.07) possibly_damaging(0.684) TCGA-BR-4184-01 6 126080924 126080924 G T HEY2 Missense_Mutation p.W330C 0.36 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 6 126249853 126249855 ATG - NCOA7 In_Frame_Del p.D923del 0.18 TCGA-BR-4184-01 6 127767937 127767937 A G KIAA0408 Silent p.P509P 0.11 TCGA-BR-4184-01 6 127796499 127796499 C T SOGA3 Missense_Mutation p.R891H 0.18 deleterious(0.01) possibly_damaging(0.891) TCGA-BR-4184-01 6 127796980 127796980 A G SOGA3 Missense_Mutation p.S731P 0.17 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 6 127797299 127797299 G A SOGA3 Silent p.G624G 0.33 TCGA-BR-4184-01 6 127911356 127911356 C T C6orf58 Missense_Mutation p.P267S 0.22 deleterious(0.04) possibly_damaging(0.888) TCGA-BR-4184-01 6 128134568 128134568 T - THEMIS Frame_Shift_Del p.V407Wfs*2 0.17 TCGA-BR-4184-01 6 128134766 128134766 G A THEMIS Silent p.G340G 0.11 TCGA-BR-4184-01 6 12933967 12933967 G A PHACTR1 Missense_Mutation p.G118D 0.07 unknown(0) TCGA-BR-4184-01 6 130465849 130465849 T C SAMD3 Missense_Mutation p.D460G 0.20 tolerated(0.38) benign(0.156) TCGA-BR-4184-01 6 131921295 131921295 A - MED23 Frame_Shift_Del p.F701Lfs*20 0.22 TCGA-BR-4184-01 6 132891588 132891588 C T TAAR6 Missense_Mutation p.A43V 0.18 tolerated(0.51) benign(0.005) TCGA-BR-4184-01 6 132910431 132910431 C T TAAR5 Missense_Mutation p.R132H 0.20 deleterious(0.04) benign(0.126) TCGA-BR-4184-01 6 132910625 132910625 C T TAAR5 Silent p.T67T 0.21 TCGA-BR-4184-01 6 133789774 133789774 C T EYA4 Missense_Mutation p.A292V 0.21 tolerated(0.48) benign(0.146) TCGA-BR-4184-01 6 134350436 134350436 A G SLC2A12 Missense_Mutation p.V176A 0.11 deleterious(0.01) probably_damaging(0.995) TCGA-BR-4184-01 6 13638133 13638133 C T RANBP9 Missense_Mutation p.C527Y 0.14 tolerated(0.2) benign(0.005) TCGA-BR-4184-01 6 136597397 136597397 A T BCLAF1 Missense_Mutation p.S422R 0.11 tolerated(0.24) benign(0.025) TCGA-BR-4184-01 6 137322692 137322692 G A IL20RA 3'UTR 0.07 TCGA-BR-4184-01 6 137322948 137322948 C A IL20RA Missense_Mutation p.G470V 0.24 tolerated(0.32) benign(0.025) TCGA-BR-4184-01 6 138655785 138655785 C T KIAA1244 Silent p.G1934G 0.11 TCGA-BR-4184-01 6 139234053 139234053 G A REPS1 Missense_Mutation p.A606V 0.20 tolerated(0.1) benign(0.197) TCGA-BR-4184-01 6 139495646 139495646 C T HECA Silent p.Y479Y 0.19 TCGA-BR-4184-01 6 139563913 139563913 G A TXLNB Missense_Mutation p.A602V 0.15 tolerated_low_confidence(0.16) benign(0) TCGA-BR-4184-01 6 142409858 142409858 G A NMBR 5'UTR 0.25 TCGA-BR-4184-01 6 143092794 143092794 G A HIVEP2 Nonsense_Mutation p.R1028* 0.09 TCGA-BR-4184-01 6 143382137 143382137 G T AIG1 Missense_Mutation p.K25N 0.23 tolerated(0.12) benign(0.07) TCGA-BR-4184-01 6 144613000 144613000 C T UTRN Silent p.D12D 0.09 TCGA-BR-4184-01 6 145948764 145948764 C T EPM2A Missense_Mutation p.V262M 0.15 deleterious(0) probably_damaging(0.996) TCGA-BR-4184-01 6 146350908 146350908 G A GRM1 Silent p.T85T 0.11 TCGA-BR-4184-01 6 146720226 146720226 G A GRM1 Missense_Mutation p.R684H 0.19 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 6 146720492 146720492 A G GRM1 Missense_Mutation p.K773E 0.18 deleterious(0) probably_damaging(0.994) TCGA-BR-4184-01 6 148808836 148808836 C T SASH1 Silent p.G238G 0.24 TCGA-BR-4184-01 6 148869651 148869651 C T SASH1 Missense_Mutation p.A1234V 0.13 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BR-4184-01 6 150111190 150111190 G A PCMT1 Missense_Mutation p.R156H 0.09 tolerated(0.65) benign(0.015) TCGA-BR-4184-01 6 150174287 150174287 G A LRP11 Missense_Mutation p.A208V 0.14 deleterious(0.01) benign(0.107) TCGA-BR-4184-01 6 150212073 150212074 AC - RAET1E 5'UTR 0.13 TCGA-BR-4184-01 6 150342136 150342136 G A RAET1L Missense_Mutation p.A179V 0.16 deleterious(0) benign(0.103) TCGA-BR-4184-01 6 151054969 151054969 C T PLEKHG1 Missense_Mutation p.A51V 0.08 deleterious(0) possibly_damaging(0.89) TCGA-BR-4184-01 6 151130348 151130348 G A PLEKHG1 Silent p.T340T 0.22 TCGA-BR-4184-01 6 151152385 151152386 TT - PLEKHG1 Frame_Shift_Del p.Y714Rfs*19 0.12 TCGA-BR-4184-01 6 151152440 151152440 G A PLEKHG1 Silent p.T731T 0.09 TCGA-BR-4184-01 6 151671215 151671215 C T AKAP12 Silent p.G563G 0.28 TCGA-BR-4184-01 6 152201884 152201884 C T ESR1 Silent p.Y246Y 0.11 TCGA-BR-4184-01 6 152631641 152631641 A T SYNE1 Missense_Mutation p.F5637I 0.20 possibly_damaging(0.842) TCGA-BR-4184-01 6 152631934 152631934 G A SYNE1 Silent p.S5595S 0.20 TCGA-BR-4184-01 6 152746516 152746516 C T SYNE1 Missense_Mutation p.R1756K 0.07 probably_damaging(0.99) TCGA-BR-4184-01 6 152841620 152841620 C T SYNE1 Missense_Mutation p.A95T 0.18 probably_damaging(0.999) TCGA-BR-4184-01 6 153293482 153293482 T - FBXO5 Frame_Shift_Del p.D340Mfs*30 0.21 TCGA-BR-4184-01 6 154481030 154481030 T C IPCEF1 Missense_Mutation p.D417G 0.30 tolerated(0.41) benign(0) TCGA-BR-4184-01 6 154481146 154481146 G A IPCEF1 Silent p.N378N 0.25 TCGA-BR-4184-01 6 15520488 15520488 C T JARID2 3'UTR 0.17 TCGA-BR-4184-01 6 155469392 155469392 G A TIAM2 Missense_Mutation p.S651N 0.19 tolerated(0.28) benign(0.002) TCGA-BR-4184-01 6 155532392 155532392 G T TIAM2 Missense_Mutation p.G1040V 0.12 tolerated(0.05) benign(0.374) TCGA-BR-4184-01 6 155561791 155561791 G A TIAM2 Missense_Mutation p.R1099H 0.16 deleterious(0) benign(0.282) TCGA-BR-4184-01 6 155577914 155577914 G A TIAM2 Missense_Mutation p.E1589K 0.08 deleterious(0.01) benign(0.312) TCGA-BR-4184-01 6 155596935 155596935 C T CLDN20 Missense_Mutation p.P28S 0.21 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 6 155743924 155743924 G A NOX3 Silent p.C404C 0.16 TCGA-BR-4184-01 6 155761236 155761236 G A NOX3 Silent p.G174G 0.18 TCGA-BR-4184-01 6 15627674 15627674 C T DTNBP1 Silent p.A85A 0.12 TCGA-BR-4184-01 6 157488293 157488293 C T ARID1B Missense_Mutation p.A1000V 0.25 possibly_damaging(0.468) TCGA-BR-4184-01 6 158517270 158517270 C T SYNJ2 Silent p.G1455G 0.15 TCGA-BR-4184-01 6 158923299 158923299 C T TULP4 Silent p.G868G 0.25 TCGA-BR-4184-01 6 159398503 159398503 G A RSPH3 3'UTR 0.17 TCGA-BR-4184-01 6 160468277 160468277 C T IGF2R Missense_Mutation p.T713I 0.09 deleterious(0) possibly_damaging(0.749) TCGA-BR-4184-01 6 160497000 160497000 C T IGF2R Missense_Mutation p.A1763V 0.12 tolerated(1) benign(0.017) TCGA-BR-4184-01 6 160523629 160523629 C T IGF2R Silent p.G2307G 0.19 TCGA-BR-4184-01 6 160977182 160977182 G T LPA Nonsense_Mutation p.C1616* 0.13 TCGA-BR-4184-01 6 161006078 161006078 G A LPA Missense_Mutation p.A1430V 0.12 tolerated(0.1) possibly_damaging(0.686) TCGA-BR-4184-01 6 161020532 161020532 G A LPA Missense_Mutation p.A1096V 0.07 deleterious(0.02) probably_damaging(0.987) TCGA-BR-4184-01 6 161026078 161026078 G A LPA Missense_Mutation p.A982V 0.24 tolerated(0.16) probably_damaging(0.997) TCGA-BR-4184-01 6 161135891 161135892 - A PLG Frame_Shift_Ins p.C206Mfs*31 0.11 TCGA-BR-4184-01 6 161152221 161152221 G A PLG Silent p.P465P 0.23 TCGA-BR-4184-01 6 161508846 161508846 G A MAP3K4 Missense_Mutation p.V895I 0.23 tolerated(0.75) benign(0.002) TCGA-BR-4184-01 6 161523018 161523018 C T MAP3K4 Nonsense_Mutation p.R1257* 0.14 TCGA-BR-4184-01 6 161533750 161533750 C T MAP3K4 Missense_Mutation p.R1524C 0.15 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 6 161574408 161574408 C T AGPAT4 Missense_Mutation p.A212T 0.29 tolerated(1) benign(0.364) TCGA-BR-4184-01 6 161966407 161966407 G A PARK2 Intron 0.14 TCGA-BR-4184-01 6 163984542 163984542 G A QKI Missense_Mutation p.R242H 0.18 tolerated(0.06) probably_damaging(0.935) TCGA-BR-4184-01 6 163987695 163987695 T - QKI Intron 0.25 TCGA-BR-4184-01 6 165715311 165715311 C T C6orf118 Missense_Mutation p.G167D 0.12 tolerated(0.28) benign(0.22) TCGA-BR-4184-01 6 167343007 167343007 T - RNASET2 3'UTR 0.14 TCGA-BR-4184-01 6 167416821 167416821 T - FGFR1OP Intron 0.38 TCGA-BR-4184-01 6 167436102 167436102 A G FGFR1OP Missense_Mutation p.K262R 0.22 deleterious(0.02) probably_damaging(0.945) TCGA-BR-4184-01 6 167728837 167728837 C T UNC93A Missense_Mutation p.A424V 0.13 tolerated(0.13) benign(0.107) TCGA-BR-4184-01 6 168281118 168281118 C A MLLT4 Missense_Mutation p.P273H 0.25 tolerated(0.06) possibly_damaging(0.601) TCGA-BR-4184-01 6 168312071 168312071 T C MLLT4 Missense_Mutation p.S647P 0.20 tolerated(0.05) probably_damaging(0.999) TCGA-BR-4184-01 6 168352728 168352728 G A MLLT4 Missense_Mutation p.R1558H 0.31 deleterious_low_confidence(0.03) probably_damaging(0.999) TCGA-BR-4184-01 6 170592454 170592454 G A DLL1 Missense_Mutation p.A638V 0.18 tolerated(0.28) benign(0.029) TCGA-BR-4184-01 6 170627136 170627136 G A FAM120B Missense_Mutation p.A220T 0.28 tolerated(0.79) benign(0.02) TCGA-BR-4184-01 6 170881367 170881367 C T TBP 3'UTR 0.17 TCGA-BR-4184-01 6 17421836 17421836 G A CAP2 Missense_Mutation p.R17H 0.12 deleterious(0.02) probably_damaging(1) TCGA-BR-4184-01 6 17608468 17608468 T - FAM8A1 Frame_Shift_Del p.F382Sfs*20 0.13 TCGA-BR-4184-01 6 17637996 17637996 C T NUP153 Missense_Mutation p.A618T 0.27 tolerated(1) benign(0.004) TCGA-BR-4184-01 6 17640225 17640225 A - NUP153 Frame_Shift_Del p.F597Lfs*7 0.20 TCGA-BR-4184-01 6 18200736 18200736 G A KDM1B Missense_Mutation p.V298I 0.13 tolerated_low_confidence(0.23) unknown(0) TCGA-BR-4184-01 6 18399838 18399839 - C RNF144B Frame_Shift_Ins p.L27Pfs*10 0.11 TCGA-BR-4184-01 6 20118754 20118754 C T MBOAT1 Missense_Mutation p.A309T 0.24 deleterious(0.01) probably_damaging(1) TCGA-BR-4184-01 6 20481611 20481611 G T E2F3 Missense_Mutation p.G227V 0.21 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 6 20546663 20546663 C T CDKAL1 Missense_Mutation p.H28Y 0.10 tolerated(1) benign(0) TCGA-BR-4184-01 6 24601407 24601407 T - KIAA0319 5'UTR 0.41 TCGA-BR-4184-01 6 24714622 24714622 C T C6orf62 Missense_Mutation p.R118Q 0.22 tolerated(0.08) probably_damaging(0.995) TCGA-BR-4184-01 6 26017792 26017792 G A HIST1H1A Missense_Mutation p.R57C 0.11 deleterious(0) probably_damaging(0.998) TCGA-BR-4184-01 6 26093362 26093362 G A HFE Missense_Mutation p.G303D 0.11 tolerated(0.26) benign(0.001) TCGA-BR-4184-01 6 26108074 26108074 C T HIST1H1T Missense_Mutation p.R83H 0.23 deleterious(0.04) probably_damaging(0.929) TCGA-BR-4184-01 6 26124765 26124765 C T HIST1H2AC Missense_Mutation p.T102I 0.19 deleterious_low_confidence(0.02) probably_damaging(0.994) TCGA-BR-4184-01 6 26225715 26225715 C T HIST1H3E Silent p.C111C 0.11 TCGA-BR-4184-01 6 26252014 26252014 C T HIST1H2BH Silent p.L46L 0.23 TCGA-BR-4184-01 6 26390250 26390250 G A BTN2A2 Missense_Mutation p.A248T 0.19 tolerated(0.94) benign(0) TCGA-BR-4184-01 6 26392964 26392964 C T BTN2A2 Silent p.G447G 0.26 TCGA-BR-4184-01 6 26431654 26431654 G A BTN2A3P RNA 0.08 TCGA-BR-4184-01 6 26597319 26597319 T C ABT1 Missense_Mutation p.C37R 0.18 tolerated(0.54) benign(0) TCGA-BR-4184-01 6 2671523 2671523 G A MYLK4 3'UTR 0.15 TCGA-BR-4184-01 6 2785298 2785298 T C WRNIP1 Missense_Mutation p.Y594H 0.17 deleterious(0.01) possibly_damaging(0.886) TCGA-BR-4184-01 6 28200861 28200861 C T ZSCAN9 Nonsense_Mutation p.R415* 0.13 TCGA-BR-4184-01 6 28251950 28251950 G C PGBD1 Missense_Mutation p.E120D 0.17 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BR-4184-01 6 29231718 29231718 G A XXbac-BPG308J9.3 RNA 0.15 TCGA-BR-4184-01 6 29274617 29274617 C T OR14J1 Missense_Mutation p.R51C 0.22 tolerated(0.12) benign(0.39) TCGA-BR-4184-01 6 29408113 29408113 C T OR10C1 Silent p.G107G 0.20 TCGA-BR-4184-01 6 29430238 29430238 C A OR2H1 Missense_Mutation p.A231E 0.11 deleterious(0) possibly_damaging(0.685) TCGA-BR-4184-01 6 29455184 29455184 C T MAS1L Missense_Mutation p.A166T 0.29 deleterious(0.05) probably_damaging(0.93) TCGA-BR-4184-01 6 29692164 29692164 C T HLA-F Silent p.G183G 0.27 TCGA-BR-4184-01 6 30569937 30569937 C T PPP1R10 Missense_Mutation p.R830H 0.17 tolerated_low_confidence(0.17) unknown(0) TCGA-BR-4184-01 6 30624478 30624478 C T DHX16 Missense_Mutation p.R736H 0.12 deleterious(0) unknown(0) TCGA-BR-4184-01 6 30633376 30633376 C T DHX16 Silent p.R267R 0.17 TCGA-BR-4184-01 6 30679846 30679846 C - MDC1 Frame_Shift_Del p.A625Pfs*31 0.24 TCGA-BR-4184-01 6 30681102 30681102 C T MDC1 Missense_Mutation p.G206D 0.35 tolerated(0.89) benign(0.005) TCGA-BR-4184-01 6 31106442 31106442 C T PSORS1C1 Missense_Mutation p.T18I 0.16 deleterious_low_confidence(0) possibly_damaging(0.702) TCGA-BR-4184-01 6 31496761 31496761 G A MCCD1 5'UTR 0.20 TCGA-BR-4184-01 6 31506724 31506724 G A DDX39B Intron 0.11 TCGA-BR-4184-01 6 31525506 31525506 C - NFKBIL1 Frame_Shift_Del p.W148Gfs*122 0.22 TCGA-BR-4184-01 6 31597080 31597080 C T PRRC2A Missense_Mutation p.S642L 0.26 benign(0.32) TCGA-BR-4184-01 6 31675769 31675769 C T LY6G6F Silent p.G168G 0.09 TCGA-BR-4184-01 6 31695064 31695064 C T DDAH2 Missense_Mutation p.A270T 0.21 deleterious(0.01) possibly_damaging(0.894) TCGA-BR-4184-01 6 31713064 31713064 C T MSH5 Missense_Mutation p.A245V 0.09 tolerated(0.08) benign(0.007) TCGA-BR-4184-01 6 31833122 31833122 G A SLC44A4 Missense_Mutation p.A577V 0.22 deleterious(0.01) probably_damaging(0.992) TCGA-BR-4184-01 6 31846749 31846750 - C SLC44A4 Frame_Shift_Ins p.Q5Afs*6 0.22 TCGA-BR-4184-01 6 31852462 31852462 G - EHMT2 Frame_Shift_Del p.L855Cfs*36 0.24 TCGA-BR-4184-01 6 31868726 31868726 G A ZBTB12 Silent p.C119C 0.13 TCGA-BR-4184-01 6 31938887 31938887 G A DXO Missense_Mutation p.R132W 0.29 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 6 32017064 32017064 G A TNXB 5'Flank 0.20 TCGA-BR-4184-01 6 32020573 32020573 G A TNXB Missense_Mutation p.R2995C 0.28 probably_damaging(0.942) TCGA-BR-4184-01 6 32041456 32041456 C T RNA5SP206 3'Flank 0.19 TCGA-BR-4184-01 6 32052264 32052264 C T TNXB Missense_Mutation p.R1124H 0.10 probably_damaging(0.997) TCGA-BR-4184-01 6 32063527 32063527 G A TNXB Silent p.G701G 0.28 TCGA-BR-4184-01 6 32166736 32166736 C T NOTCH4 Missense_Mutation p.R1501Q 0.28 deleterious(0) probably_damaging(0.996) TCGA-BR-4184-01 6 32261736 32261736 G A C6orf10 Silent p.G238G 0.08 TCGA-BR-4184-01 6 32813337 32813337 C T TAP1 3'UTR 0.15 TCGA-BR-4184-01 6 32944496 32944496 G A BRD2 Missense_Mutation p.R328H 0.14 deleterious(0.03) possibly_damaging(0.904) TCGA-BR-4184-01 6 33138611 33138611 C T COL11A2 Silent p.G1064G 0.08 TCGA-BR-4184-01 6 33236902 33236902 G A VPS52 Missense_Mutation p.T146I 0.10 tolerated(0.22) possibly_damaging(0.733) TCGA-BR-4184-01 6 33263356 33263356 C - RGL2 Frame_Shift_Del p.E317Rfs*2 0.16 TCGA-BR-4184-01 6 33273060 33273060 C T TAPBP Missense_Mutation p.A192T 0.20 tolerated(0.27) benign(0.02) TCGA-BR-4184-01 6 33287520 33287520 C T DAXX Missense_Mutation p.R526H 0.20 deleterious_low_confidence(0.04) benign(0.007) TCGA-BR-4184-01 6 33288785 33288785 C T DAXX Missense_Mutation p.R256H 0.20 deleterious(0.03) benign(0.333) TCGA-BR-4184-01 6 33380151 33380151 G A PHF1 Silent p.V37V 0.20 TCGA-BR-4184-01 6 33385291 33385291 C T CUTA Missense_Mutation p.C94Y 0.18 deleterious(0) probably_damaging(0.969) TCGA-BR-4184-01 6 33403339 33403339 C T SYNGAP1 Silent p.A237A 0.07 TCGA-BR-4184-01 6 33638955 33638955 C T ITPR3 Missense_Mutation p.A867V 0.18 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 6 33646527 33646527 C T ITPR3 Missense_Mutation p.R1295C 0.13 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 6 33661334 33661334 A G ITPR3 Missense_Mutation p.D2546G 0.17 tolerated(0.15) benign(0.443) TCGA-BR-4184-01 6 33703375 33703375 C T IP6K3 5'UTR 0.36 TCGA-BR-4184-01 6 34309727 34309727 C T NUDT3 Missense_Mutation p.R41H 0.26 deleterious(0) benign(0.422) TCGA-BR-4184-01 6 348968 348968 C T DUSP22 Intron 0.38 TCGA-BR-4184-01 6 34949512 34949512 C T ANKS1A Missense_Mutation p.H161Y 0.12 deleterious(0.01) probably_damaging(0.962) TCGA-BR-4184-01 6 35053698 35053698 C T ANKS1A Silent p.G1096G 0.36 TCGA-BR-4184-01 6 35090014 35090014 G A TCP11 Missense_Mutation p.A166V 0.16 deleterious(0.03) benign(0.394) TCGA-BR-4184-01 6 35437973 35437973 T - RPL10A Frame_Shift_Del p.L111Wfs*6 0.20 TCGA-BR-4184-01 6 35716414 35716414 G A ARMC12 Missense_Mutation p.A291T 0.16 tolerated(0.67) benign(0.001) TCGA-BR-4184-01 6 35773525 35773525 C T LHFPL5 Silent p.G26G 0.19 TCGA-BR-4184-01 6 35773571 35773571 G A LHFPL5 Missense_Mutation p.A42T 0.17 deleterious(0.01) benign(0.42) TCGA-BR-4184-01 6 36020576 36020576 C T MAPK14 Missense_Mutation p.R73W 0.18 deleterious(0) probably_damaging(0.993) TCGA-BR-4184-01 6 36168834 36168834 C T BRPF3 Silent p.G245G 0.11 TCGA-BR-4184-01 6 36181729 36181729 C - BRPF3 Frame_Shift_Del p.P854Rfs*6 0.26 TCGA-BR-4184-01 6 36767799 36767799 G A CPNE5 Missense_Mutation p.R78C 0.28 deleterious(0) probably_damaging(0.984) TCGA-BR-4184-01 6 36938207 36938207 C T MTCH1 Missense_Mutation p.D316N 0.17 tolerated(0.99) probably_damaging(0.966) TCGA-BR-4184-01 6 36993700 36993700 C T FGD2 Missense_Mutation p.R531W 0.19 deleterious(0) possibly_damaging(0.898) TCGA-BR-4184-01 6 37622633 37622633 G A MDGA1 Missense_Mutation p.R219C 0.21 deleterious(0) probably_damaging(0.998) TCGA-BR-4184-01 6 38120051 38120051 C T ZFAND3 Silent p.H190H 0.20 TCGA-BR-4184-01 6 3850869 3850869 G A FAM50B Missense_Mutation p.R275H 0.17 deleterious(0) probably_damaging(0.955) TCGA-BR-4184-01 6 38781840 38781840 C T DNAH8 Nonsense_Mutation p.R873* 0.16 TCGA-BR-4184-01 6 38840416 38840416 C T DNAH8 Silent p.C2148C 0.12 TCGA-BR-4184-01 6 40400194 40400194 C T LRFN2 Missense_Mutation p.R220H 0.17 tolerated(0.1) probably_damaging(0.993) TCGA-BR-4184-01 6 41000791 41000791 A G UNC5CL Missense_Mutation p.S261P 0.29 tolerated(0.24) benign(0.002) TCGA-BR-4184-01 6 41002811 41002811 C T UNC5CL Translation_Start_Site p.M1? 0.09 deleterious_low_confidence(0) benign(0.341) TCGA-BR-4184-01 6 41654874 41654874 C T TFEB Missense_Mutation p.R254H 0.15 deleterious(0) probably_damaging(0.995) TCGA-BR-4184-01 6 41710065 41710065 C T PGC Missense_Mutation p.A204T 0.23 tolerated(0.36) benign(0.004) TCGA-BR-4184-01 6 41711128 41711128 C T PGC Splice_Site p.X110_splice 0.16 TCGA-BR-4184-01 6 41773964 41773964 G A USP49 Missense_Mutation p.T253M 0.19 deleterious(0) probably_damaging(0.954) TCGA-BR-4184-01 6 41884626 41884626 C T MED20 Silent p.E22E 0.19 TCGA-BR-4184-01 6 42227309 42227309 G A TRERF1 Silent p.G679G 0.22 TCGA-BR-4184-01 6 42796383 42796383 C T GLTSCR1L Silent p.D104D 0.21 TCGA-BR-4184-01 6 43034106 43034106 C T KLC4 Missense_Mutation p.R230W 0.15 deleterious(0.01) probably_damaging(0.988) TCGA-BR-4184-01 6 43225666 43225666 G A TTBK1 Silent p.P326P 0.21 TCGA-BR-4184-01 6 43406513 43406513 G A ABCC10 Missense_Mutation p.A703T 0.23 deleterious(0) probably_damaging(0.959) TCGA-BR-4184-01 6 43414079 43414079 A G ABCC10 Missense_Mutation p.T1147A 0.12 tolerated(1) benign(0.003) TCGA-BR-4184-01 6 43418413 43418413 G - DLK2 Frame_Shift_Del p.P339Lfs*96 0.24 TCGA-BR-4184-01 6 43638573 43638573 C T RSPH9 Missense_Mutation p.A257V 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.873) TCGA-BR-4184-01 6 44115223 44115223 C T TMEM63B Nonsense_Mutation p.R325* 0.18 TCGA-BR-4184-01 6 44248038 44248038 G A TCTE1 Silent p.S462S 0.14 TCGA-BR-4184-01 6 44364110 44364110 C T CDC5L Missense_Mutation p.R158C 0.19 deleterious(0) probably_damaging(0.991) TCGA-BR-4184-01 6 44376319 44376319 G A CDC5L Missense_Mutation p.V348I 0.18 tolerated(0.28) benign(0.001) TCGA-BR-4184-01 6 45870751 45870751 G A CLIC5 3'UTR 0.11 TCGA-BR-4184-01 6 45922936 45922936 G A CLIC5 Missense_Mutation p.R196C 0.32 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 6 46111218 46111218 C T ENPP4 Silent p.C401C 0.16 TCGA-BR-4184-01 6 46111390 46111390 C T ENPP4 3'UTR 0.06 TCGA-BR-4184-01 6 46630156 46630156 T - SLC25A27 Frame_Shift_Del p.L144* 0.15 TCGA-BR-4184-01 6 46657655 46657655 C T TDRD6 Missense_Mutation p.A597V 0.17 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 6 47253980 47253980 A G TNFRSF21 Missense_Mutation p.C150R 0.14 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 6 47847321 47847321 A G PTCHD4 Missense_Mutation p.V420A 0.19 tolerated(1) benign(0.057) TCGA-BR-4184-01 6 49573456 49573456 G T RHAG 3'UTR 0.21 TCGA-BR-4184-01 6 49989664 49989664 A - DEFB110 5'UTR 0.09 TCGA-BR-4184-01 6 50796340 50796340 A C TFAP2B Missense_Mutation p.E183D 0.26 tolerated(0.91) benign(0.002) TCGA-BR-4184-01 6 51484273 51484273 T C PKHD1 Missense_Mutation p.H3944R 0.19 deleterious_low_confidence(0.02) benign(0.055) TCGA-BR-4184-01 6 51732850 51732850 G A PKHD1 Missense_Mutation p.A2515V 0.18 deleterious(0.02) benign(0.053) TCGA-BR-4184-01 6 51771122 51771122 G A PKHD1 Silent p.G2233G 0.09 TCGA-BR-4184-01 6 51900433 51900433 C T PKHD1 Missense_Mutation p.A1062T 0.15 tolerated(1) benign(0) TCGA-BR-4184-01 6 52883237 52883237 G A ICK Missense_Mutation p.A185V 0.14 deleterious(0) probably_damaging(0.998) TCGA-BR-4184-01 6 52996822 52996822 G A GCM1 Missense_Mutation p.R142C 0.09 deleterious(0.01) possibly_damaging(0.808) TCGA-BR-4184-01 6 53516493 53516493 G A KLHL31 Missense_Mutation p.A603V 0.14 tolerated(0.05) possibly_damaging(0.773) TCGA-BR-4184-01 6 5368994 5368994 G A FARS2 Missense_Mutation p.S64N 0.08 deleterious(0.02) benign(0.027) TCGA-BR-4184-01 6 549284 549284 C T EXOC2 Missense_Mutation p.R710H 0.13 deleterious(0) benign(0) TCGA-BR-4184-01 6 55216125 55216125 G A GFRAL Missense_Mutation p.A149T 0.19 deleterious(0.01) possibly_damaging(0.904) TCGA-BR-4184-01 6 55623844 55623844 C T BMP5 Missense_Mutation p.A392T 0.13 deleterious(0) benign(0.376) TCGA-BR-4184-01 6 56323854 56323854 C T DST Silent p.T5155T 0.17 TCGA-BR-4184-01 6 56382365 56382365 T - DST Frame_Shift_Del p.K3438Nfs*2 0.27 TCGA-BR-4184-01 6 56392496 56392496 G A DST Missense_Mutation p.A3283V 0.09 benign(0.272) TCGA-BR-4184-01 6 56464943 56464943 C T DST Missense_Mutation p.R1250H 0.19 benign(0.067) TCGA-BR-4184-01 6 56489313 56489313 A G DST Intron 0.12 TCGA-BR-4184-01 6 56499320 56499320 A G DST Missense_Mutation p.V608A 0.25 probably_damaging(0.997) TCGA-BR-4184-01 6 56880071 56880071 A G BEND6 Missense_Mutation p.T147A 0.12 tolerated_low_confidence(0.51) benign(0.004) TCGA-BR-4184-01 6 56917800 56917800 G A KIAA1586 Missense_Mutation p.R168Q 0.14 tolerated(0.6) benign(0.001) TCGA-BR-4184-01 6 56918150 56918150 C T KIAA1586 Missense_Mutation p.R285C 0.17 deleterious(0.04) benign(0.058) TCGA-BR-4184-01 6 57012276 57012277 - A ZNF451 Frame_Shift_Ins p.S467Ifs*4 0.09 TCGA-BR-4184-01 6 576783 576783 C A EXOC2 Missense_Mutation p.S431I 0.22 tolerated(0.16) benign(0.086) TCGA-BR-4184-01 6 6002648 6002648 G A NRN1 Silent p.G46G 0.14 TCGA-BR-4184-01 6 64286802 64286802 G A PTP4A1 Missense_Mutation p.R6H 0.19 tolerated(0.25) benign(0.003) TCGA-BR-4184-01 6 64394427 64394428 - A PHF3 Frame_Shift_Ins p.N270Kfs*2 0.17 TCGA-BR-4184-01 6 655997 655997 C T HUS1B 3'UTR 0.20 TCGA-BR-4184-01 6 66200576 66200576 C A EYS Missense_Mutation p.G258V 0.26 deleterious(0.01) possibly_damaging(0.848) TCGA-BR-4184-01 6 69348715 69348715 A - BAI3 Frame_Shift_Del p.N51Tfs*21 0.13 TCGA-BR-4184-01 6 69665995 69665995 G A BAI3 Silent p.R425R 0.21 TCGA-BR-4184-01 6 69666038 69666038 C T BAI3 Missense_Mutation p.P440S 0.22 tolerated(0.72) benign(0.089) TCGA-BR-4184-01 6 69703826 69703826 G T BAI3 Missense_Mutation p.S634I 0.09 tolerated(0.21) possibly_damaging(0.876) TCGA-BR-4184-01 6 69758103 69758103 G T BAI3 Missense_Mutation p.A712S 0.31 tolerated(1) benign(0.005) TCGA-BR-4184-01 6 70098714 70098714 A G BAI3 Silent p.P1500P 0.10 TCGA-BR-4184-01 6 70639416 70639416 C T COL19A1 Missense_Mutation p.R164C 0.12 tolerated(0.14) unknown(0) TCGA-BR-4184-01 6 70639518 70639518 G A COL19A1 Missense_Mutation p.D198N 0.07 deleterious(0.01) unknown(0) TCGA-BR-4184-01 6 70917029 70917029 C A COL19A1 3'UTR 0.12 TCGA-BR-4184-01 6 71003937 71003937 C T COL9A1 Missense_Mutation p.G210D 0.25 unknown(0) TCGA-BR-4184-01 6 71442157 71442157 T C SMAP1 Silent p.V65V 0.19 TCGA-BR-4184-01 6 7229286 7229286 C T RREB1 Silent p.C318C 0.13 TCGA-BR-4184-01 6 7229303 7229303 C T RREB1 Missense_Mutation p.A324V 0.12 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 6 7247285 7247285 C T RREB1 Silent p.S1534S 0.19 TCGA-BR-4184-01 6 73016981 73016981 C T RIMS1 Nonsense_Mutation p.R1291* 0.15 TCGA-BR-4184-01 6 73787158 73787158 C T KCNQ5 Missense_Mutation p.R244C 0.29 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 6 73879485 73879485 C T KCNQ5 Silent p.G514G 0.19 TCGA-BR-4184-01 6 7583315 7583315 T C DSP Silent p.D1940D 0.21 TCGA-BR-4184-01 6 75839850 75839850 C A COL12A1 Missense_Mutation p.R2056M 0.12 probably_damaging(0.933) TCGA-BR-4184-01 6 7584793 7584793 G A DSP Missense_Mutation p.C2433Y 0.11 probably_damaging(0.998) TCGA-BR-4184-01 6 76023157 76023157 A G FILIP1 Silent p.D797D 0.22 TCGA-BR-4184-01 6 7606353 7606353 G T SNRNP48 Missense_Mutation p.R299M 0.16 deleterious(0.02) benign(0.031) TCGA-BR-4184-01 6 76124508 76124508 T - FILIP1 Frame_Shift_Del p.T61Hfs*26 0.20 TCGA-BR-4184-01 6 79668246 79668246 C T PHIP Missense_Mutation p.S1243N 0.23 deleterious(0) possibly_damaging(0.489) TCGA-BR-4184-01 6 79695140 79695140 G A PHIP Silent p.G822G 0.17 TCGA-BR-4184-01 6 79708078 79708078 T G PHIP Missense_Mutation p.N637T 0.20 tolerated(0.27) benign(0.023) TCGA-BR-4184-01 6 80635973 80635973 G A ELOVL4 Missense_Mutation p.R76C 0.17 deleterious(0) probably_damaging(0.985) TCGA-BR-4184-01 6 82933304 82933304 A G IBTK Missense_Mutation p.V326A 0.12 deleterious(0.01) benign(0.13) TCGA-BR-4184-01 6 83835317 83835317 A T DOPEY1 Missense_Mutation p.E528D 0.14 tolerated(0.28) possibly_damaging(0.521) TCGA-BR-4184-01 6 83845508 83845508 T C DOPEY1 Missense_Mutation p.V1014A 0.07 deleterious(0) probably_damaging(0.983) TCGA-BR-4184-01 6 83848526 83848526 C T DOPEY1 Silent p.L1589L 0.21 TCGA-BR-4184-01 6 83863283 83863283 T C DOPEY1 Silent p.V2061V 0.07 TCGA-BR-4184-01 6 83877659 83877659 C T DOPEY1 Missense_Mutation p.R2391C 0.12 deleterious(0.04) benign(0.263) TCGA-BR-4184-01 6 83900638 83900638 C T PGM3 Missense_Mutation p.A60T 0.13 deleterious(0) possibly_damaging(0.738) TCGA-BR-4184-01 6 8428259 8428259 G A SLC35B3 Silent p.S110S 0.14 TCGA-BR-4184-01 6 86199295 86199295 G A NT5E Silent p.S396S 0.22 TCGA-BR-4184-01 6 86324613 86324613 C T SYNCRIP Missense_Mutation p.R578H 0.16 tolerated_low_confidence(0.11) unknown(0) TCGA-BR-4184-01 6 87725357 87725357 A G HTR1E Missense_Mutation p.D102G 0.18 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 6 87725457 87725457 G A HTR1E Silent p.T135T 0.13 TCGA-BR-4184-01 6 87970954 87970954 A - ZNF292 Frame_Shift_Del p.N2538Mfs*21 0.17 TCGA-BR-4184-01 6 88049953 88049953 G A SMIM8 Silent p.G85G 0.24 TCGA-BR-4184-01 6 88128088 88128088 C T C6ORF165 Missense_Mutation p.A265V 0.18 tolerated(0.07) benign(0.044) TCGA-BR-4184-01 6 88321908 88321908 G A ORC3 Missense_Mutation p.C272Y 0.17 deleterious(0) probably_damaging(0.997) TCGA-BR-4184-01 6 88372743 88372743 A T ORC3 Missense_Mutation p.T573S 0.07 tolerated(0.92) benign(0.006) TCGA-BR-4184-01 6 88854116 88854116 G A CNR1 Missense_Mutation p.A293V 0.14 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 6 88854156 88854156 T A CNR1 Missense_Mutation p.I280F 0.11 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 6 89868083 89868083 C A PM20D2 Missense_Mutation p.L318I 0.24 tolerated(0.39) benign(0.008) TCGA-BR-4184-01 6 90363931 90363931 C T MDN1 Missense_Mutation p.E5205K 0.18 unknown(0) TCGA-BR-4184-01 6 90365627 90365627 G A MDN1 Missense_Mutation p.R5116C 0.19 unknown(0) TCGA-BR-4184-01 6 90372631 90372631 G A MDN1 Silent p.G4764G 0.17 TCGA-BR-4184-01 6 90405417 90405417 G A MDN1 Silent p.S3226S 0.12 TCGA-BR-4184-01 6 90420485 90420485 A T MDN1 Missense_Mutation p.S2560R 0.33 benign(0.223) TCGA-BR-4184-01 6 90422950 90422950 G A MDN1 Nonsense_Mutation p.R2379* 0.21 TCGA-BR-4184-01 6 90433295 90433295 G A MDN1 Missense_Mutation p.A1905V 0.19 benign(0.065) TCGA-BR-4184-01 6 90499580 90499580 C T MDN1 Nonsense_Mutation p.W383* 0.08 TCGA-BR-4184-01 6 90572093 90572093 G A CASP8AP2 RNA 0.13 TCGA-BR-4184-01 6 90660539 90660539 C A BACH2 Missense_Mutation p.R429M 0.25 deleterious(0) probably_damaging(0.986) TCGA-BR-4184-01 6 90718450 90718450 G A BACH2 Silent p.D38D 0.21 TCGA-BR-4184-01 6 91226170 91226170 A - MAP3K7 3'UTR 0.38 TCGA-BR-4184-01 6 96984150 96984150 G A UFL1 Missense_Mutation p.R229H 0.11 deleterious(0.02) benign(0.149) TCGA-BR-4184-01 6 97562260 97562260 G A KLHL32 Missense_Mutation p.R410H 0.18 tolerated(0.06) possibly_damaging(0.888) TCGA-BR-4184-01 6 99283841 99283841 C T POU3F2 Silent p.S364S 0.16 TCGA-BR-4184-01 6 9933039 9933039 G C OFCC1 Missense_Mutation p.Q74E 0.23 deleterious(0.02) benign(0.306) TCGA-BR-4184-01 6 99849276 99849276 T C PNISR Missense_Mutation p.S520G 0.09 tolerated_low_confidence(0.23) benign(0.294) TCGA-BR-4184-01 6 99855980 99855980 G A PNISR Missense_Mutation p.R281C 0.20 deleterious(0.04) probably_damaging(0.968) TCGA-BR-4184-01 6 99856111 99856111 C T PNISR Missense_Mutation p.R237H 0.14 deleterious(0) probably_damaging(0.994) TCGA-BR-4184-01 7 100275127 100275127 G A GNB2 Missense_Mutation p.A92T 0.23 tolerated(0.05) benign(0.027) TCGA-BR-4184-01 7 100275393 100275393 G A GNB2 Missense_Mutation p.R150H 0.16 deleterious(0.02) benign(0.235) TCGA-BR-4184-01 7 100389759 100389759 G A ZAN Silent p.E2566E 0.25 TCGA-BR-4184-01 7 100421410 100421410 C T EPHB4 Silent p.T89T 0.46 TCGA-BR-4184-01 7 100459098 100459098 C T SLC12A9 Silent p.G476G 0.40 TCGA-BR-4184-01 7 100460410 100460410 C T SLC12A9 Missense_Mutation p.R607C 0.15 deleterious(0) probably_damaging(0.932) TCGA-BR-4184-01 7 100485018 100485018 G A SRRT Missense_Mutation p.A685T 0.27 tolerated(0.33) probably_damaging(0.945) TCGA-BR-4184-01 7 100491577 100491577 C T ACHE Missense_Mutation p.A93T 0.20 deleterious(0.04) possibly_damaging(0.851) TCGA-BR-4184-01 7 100648525 100648525 C T MUC12 Missense_Mutation p.A4894V 0.27 possibly_damaging(0.691) TCGA-BR-4184-01 7 100675395 100675395 C T MUC17 Missense_Mutation p.A233V 0.09 benign(0.093) TCGA-BR-4184-01 7 100676841 100676841 C T MUC17 Missense_Mutation p.T715I 0.10 possibly_damaging(0.874) TCGA-BR-4184-01 7 100695101 100695101 G A MUC17 Missense_Mutation p.A4321T 0.26 unknown(0) TCGA-BR-4184-01 7 101559425 101559425 G A CUX1 Missense_Mutation p.A32T 0.28 deleterious(0.03) unknown(0) TCGA-BR-4184-01 7 101917564 101917564 C T CUX1 Missense_Mutation p.A476V 0.27 deleterious(0.03) benign(0.26) TCGA-BR-4184-01 7 102106665 102106665 C T LRWD1 Missense_Mutation p.A127V 0.25 tolerated(1) benign(0.018) TCGA-BR-4184-01 7 103030938 103030938 C A SLC26A5 Missense_Mutation p.A417S 0.09 tolerated(1) probably_damaging(0.998) TCGA-BR-4184-01 7 103629618 103629618 C T RELN Silent p.A62A 0.26 TCGA-BR-4184-01 7 104747108 104747108 G A KMT2E Silent p.T912T 0.23 TCGA-BR-4184-01 7 104753201 104753201 G A KMT2E Silent p.S1666S 0.10 TCGA-BR-4184-01 7 104783607 104783607 G A SRPK2 Silent p.G328G 0.13 TCGA-BR-4184-01 7 106827054 106827054 G A HBP1 Nonsense_Mutation p.W231* 0.20 TCGA-BR-4184-01 7 107115658 107115658 C T GPR22 Nonsense_Mutation p.R385* 0.29 TCGA-BR-4184-01 7 107323732 107323732 C T SLC26A4 Missense_Mutation p.A284V 0.23 tolerated(1) benign(0.012) TCGA-BR-4184-01 7 107334884 107334884 G A SLC26A4 Missense_Mutation p.A434T 0.13 tolerated(0.08) possibly_damaging(0.507) TCGA-BR-4184-01 7 107671311 107671311 G A LAMB4 Silent p.H1644H 0.08 TCGA-BR-4184-01 7 111407090 111407090 G A DOCK4 Missense_Mutation p.R1296W 0.28 deleterious(0.03) probably_damaging(0.998) TCGA-BR-4184-01 7 111409619 111409619 T C DOCK4 Missense_Mutation p.H1256R 0.12 tolerated(0.2) benign(0.025) TCGA-BR-4184-01 7 111617195 111617195 C T DOCK4 Silent p.R231R 0.17 TCGA-BR-4184-01 7 111629103 111629103 C T DOCK4 Missense_Mutation p.R144H 0.15 deleterious(0.03) possibly_damaging(0.557) TCGA-BR-4184-01 7 111629121 111629121 C T DOCK4 Missense_Mutation p.R138Q 0.31 tolerated(1) benign(0.003) TCGA-BR-4184-01 7 112108038 112108039 - T IFRD1 Frame_Shift_Ins p.Y306Lfs*2 0.10 TCGA-BR-4184-01 7 113558291 113558291 C T PPP1R3A Missense_Mutation p.G254D 0.17 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 7 113558550 113558550 T A PPP1R3A Missense_Mutation p.T168S 0.24 tolerated(0.62) benign(0.437) TCGA-BR-4184-01 7 11464343 11464343 G A THSD7A Silent p.G1121G 0.16 TCGA-BR-4184-01 7 116340097 116340097 C T MET Missense_Mutation p.A320V 0.15 deleterious(0) probably_damaging(0.997) TCGA-BR-4184-01 7 116340317 116340317 T A MET Missense_Mutation p.N393K 0.08 tolerated(0.39) benign(0.1) TCGA-BR-4184-01 7 116417481 116417481 A G MET Missense_Mutation p.N1118D 0.29 tolerated(0.4) benign(0.001) TCGA-BR-4184-01 7 117501313 117501313 C T CTTNBP2 Missense_Mutation p.V47M 0.25 deleterious(0.01) probably_damaging(0.984) TCGA-BR-4184-01 7 119915461 119915461 C T KCND2 Missense_Mutation p.R259C 0.28 deleterious(0) probably_damaging(0.989) TCGA-BR-4184-01 7 120764394 120764394 T - CPED1 Frame_Shift_Del p.F311Lfs*5 0.27 TCGA-BR-4184-01 7 122261687 122261687 C T CADPS2 Missense_Mutation p.A318T 0.23 tolerated(0.06) benign(0.299) TCGA-BR-4184-01 7 12263863 12263863 T C TMEM106B Missense_Mutation p.V98A 0.06 deleterious(0) probably_damaging(0.998) TCGA-BR-4184-01 7 123109382 123109382 C T IQUB Silent p.T489T 0.23 TCGA-BR-4184-01 7 123593822 123593822 G T SPAM1 Missense_Mutation p.E66D 0.27 tolerated(0.43) benign(0.012) TCGA-BR-4184-01 7 124482994 124482994 C T POT1 Missense_Mutation p.E344K 0.14 tolerated(0.26) benign(0.002) TCGA-BR-4184-01 7 126173421 126173421 C T GRM8 Missense_Mutation p.R672H 0.09 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 7 126698210 126698210 G A GRM8 Intron 0.31 TCGA-BR-4184-01 7 126883250 126883250 G A GRM8 Silent p.C3C 0.13 TCGA-BR-4184-01 7 127014068 127014068 T - ZNF800 Frame_Shift_Del p.K441Rfs*61 0.10 TCGA-BR-4184-01 7 127222255 127222255 C T GCC1 Missense_Mutation p.S714N 0.26 tolerated(0.32) probably_damaging(0.962) TCGA-BR-4184-01 7 127225290 127225290 C T GCC1 5'UTR 0.12 TCGA-BR-4184-01 7 127240362 127240362 C T FSCN3 Missense_Mutation p.A469V 0.18 deleterious(0) probably_damaging(0.978) TCGA-BR-4184-01 7 12727924 12727924 G A ARL4A Silent p.L15L 0.36 TCGA-BR-4184-01 7 12728427 12728427 A G ARL4A Missense_Mutation p.H183R 0.25 tolerated(0.08) benign(0.172) TCGA-BR-4184-01 7 127669682 127669682 G A LRRC4 Missense_Mutation p.R338C 0.26 deleterious(0) possibly_damaging(0.595) TCGA-BR-4184-01 7 127670230 127670230 C T LRRC4 Missense_Mutation p.R155H 0.11 tolerated(0.06) probably_damaging(0.995) TCGA-BR-4184-01 7 127964664 127964664 C T RBM28 Silent p.T429T 0.10 TCGA-BR-4184-01 7 128482937 128482937 G A FLNC Missense_Mutation p.D827N 0.11 deleterious(0.04) probably_damaging(1) TCGA-BR-4184-01 7 128486822 128486822 G A FLNC Missense_Mutation p.G1384D 0.12 deleterious(0) probably_damaging(0.996) TCGA-BR-4184-01 7 129122851 129122851 C T STRIP2 Missense_Mutation p.R740C 0.11 deleterious(0) probably_damaging(0.993) TCGA-BR-4184-01 7 129813546 129813546 A - TMEM209 Frame_Shift_Del p.C495Afs*35 0.23 TCGA-BR-4184-01 7 129962518 129962518 C T CPA4 3'UTR 0.22 TCGA-BR-4184-01 7 130027747 130027747 G A CPA1 Silent p.G385G 0.10 TCGA-BR-4184-01 7 130138010 130138010 G A MEST Missense_Mutation p.A124T 0.10 deleterious(0) probably_damaging(0.995) TCGA-BR-4184-01 7 131829950 131829950 T A PLXNA4 Missense_Mutation p.D1718V 0.19 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 7 132192896 132192896 G A PLXNA4 Missense_Mutation p.A186V 0.25 deleterious(0) possibly_damaging(0.815) TCGA-BR-4184-01 7 132659915 132659915 T - CHCHD3 Intron 0.25 TCGA-BR-4184-01 7 134632408 134632408 C T CALD1 Missense_Mutation p.A561V 0.38 deleterious(0) unknown(0) TCGA-BR-4184-01 7 135303205 135303205 C T NUP205 Silent p.L1273L 0.23 TCGA-BR-4184-01 7 135304191 135304191 G A NUP205 Silent p.A1328A 0.17 TCGA-BR-4184-01 7 135390380 135390380 C T SLC13A4 Missense_Mutation p.S186N 0.29 tolerated(0.48) benign(0.014) TCGA-BR-4184-01 7 136848959 136848959 G A hsa-mir-490 Intron 0.24 TCGA-BR-4184-01 7 137148245 137148245 G - DGKI Frame_Shift_Del p.R917Afs*18 0.21 TCGA-BR-4184-01 7 138487646 138487646 C T TMEM213 Silent p.N52N 0.30 TCGA-BR-4184-01 7 138593813 138593813 C T KIAA1549 Missense_Mutation p.R1067H 0.10 tolerated(0.05) benign(0.059) TCGA-BR-4184-01 7 138604036 138604036 C T KIAA1549 Silent p.P112P 0.30 TCGA-BR-4184-01 7 138978728 138978728 G A UBN2 Splice_Site p.X1332_splice 0.39 TCGA-BR-4184-01 7 13971341 13971341 G T ETV1 Silent p.S196S 0.10 TCGA-BR-4184-01 7 139833448 139833448 T - KDM7A Frame_Shift_Del p.R97Gfs*41 0.10 TCGA-BR-4184-01 7 141430159 141430159 A G WEE2 3'UTR 0.35 TCGA-BR-4184-01 7 141464395 141464395 C A TAS2R3 Missense_Mutation p.A146E 0.33 tolerated(0.52) benign(0.1) TCGA-BR-4184-01 7 141759709 141759709 C T MGAM Silent p.G1334G 0.24 TCGA-BR-4184-01 7 141796213 141796213 C T MGAM Missense_Mutation p.R1668C 0.17 deleterious(0) benign(0.127) TCGA-BR-4184-01 7 141797431 141797431 C T MGAM Silent p.R1681R 0.14 TCGA-BR-4184-01 7 142032288 142032288 G T TRBV7-1 Missense_Mutation p.K36N 0.36 deleterious(0) benign(0.185) TCGA-BR-4184-01 7 142609695 142609695 T G TRPV5 Missense_Mutation p.T581P 0.09 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 7 142962190 142962190 G C GSTK1 Missense_Mutation p.S130T 0.14 tolerated_low_confidence(0.34) benign(0.096) TCGA-BR-4184-01 7 143087068 143087068 G A ZYX Missense_Mutation p.E538K 0.28 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 7 143573264 143573264 G A FAM115A Silent p.G146G 0.09 TCGA-BR-4184-01 7 143632824 143632824 C A OR2F2 Missense_Mutation p.P167T 0.34 deleterious(0.01) possibly_damaging(0.838) TCGA-BR-4184-01 7 143657808 143657808 G A OR2F1 Missense_Mutation p.A249T 0.25 tolerated(0.79) benign(0.008) TCGA-BR-4184-01 7 14653016 14653016 T A DGKB Missense_Mutation p.H437L 0.19 deleterious(0.03) benign(0.062) TCGA-BR-4184-01 7 147336252 147336252 T C CNTNAP2 Missense_Mutation p.V651A 0.19 tolerated(0.15) benign(0) TCGA-BR-4184-01 7 14758253 14758253 G A DGKB Missense_Mutation p.T127M 0.32 tolerated(0.12) benign(0.061) TCGA-BR-4184-01 7 148456729 148456729 C T CUL1 Silent p.Y208Y 0.26 TCGA-BR-4184-01 7 148544339 148544339 G A EZH2 Missense_Mutation p.R18C 0.09 deleterious(0.04) probably_damaging(0.95) TCGA-BR-4184-01 7 150027622 150027622 C T ZBED6CL Silent p.G43G 0.20 TCGA-BR-4184-01 7 150028343 150028343 C T ZBED6CL 3'UTR 0.38 TCGA-BR-4184-01 7 150069158 150069158 G T REPIN1 Missense_Mutation p.K333N 0.33 tolerated(0.11) probably_damaging(0.998) TCGA-BR-4184-01 7 150648773 150648773 C T KCNH2 Missense_Mutation p.A570T 0.22 deleterious(0) probably_damaging(0.997) TCGA-BR-4184-01 7 150815376 150815376 C T AGAP3 Silent p.T262T 0.09 TCGA-BR-4184-01 7 150912693 150912693 T A ABCF2 Missense_Mutation p.Q509H 0.25 tolerated(0.57) probably_damaging(0.992) TCGA-BR-4184-01 7 150932242 150932242 G A CHPF2 Silent p.V124V 0.21 TCGA-BR-4184-01 7 151791288 151791288 G A GALNT11 5'UTR 0.28 TCGA-BR-4184-01 7 151836295 151836295 G A KMT2C Missense_Mutation p.A4837V 0.25 probably_damaging(0.999) TCGA-BR-4184-01 7 151836322 151836322 C T KMT2C Missense_Mutation p.R4828H 0.08 probably_damaging(0.982) TCGA-BR-4184-01 7 151845524 151845524 A - KMT2C Frame_Shift_Del p.F4496Lfs*21 0.23 TCGA-BR-4184-01 7 151845551 151845551 G A KMT2C Silent p.C4487C 0.09 TCGA-BR-4184-01 7 151878430 151878430 T C KMT2C Missense_Mutation p.D2172G 0.14 benign(0.044) TCGA-BR-4184-01 7 151878749 151878749 G A KMT2C Nonsense_Mutation p.R2066* 0.33 TCGA-BR-4184-01 7 15240962 15240962 G A AGMO Missense_Mutation p.A429V 0.25 tolerated(1) benign(0.013) TCGA-BR-4184-01 7 1538054 1538054 C T INTS1 Silent p.A473A 0.17 TCGA-BR-4184-01 7 154561150 154561150 G A DPP6 Missense_Mutation p.A303T 0.24 deleterious(0.03) possibly_damaging(0.843) TCGA-BR-4184-01 7 154684518 154684518 A G DPP6 3'UTR 0.28 TCGA-BR-4184-01 7 155099960 155099961 - A INSIG1 Frame_Shift_Ins p.P274Afs*3 0.17 TCGA-BR-4184-01 7 157369425 157369425 C T PTPRN2 Missense_Mutation p.R888K 0.25 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 7 158325474 158325474 C T PTPRN2 Intron 0.13 TCGA-BR-4184-01 7 158334185 158334185 A G PTPRN2 Intron 0.25 TCGA-BR-4184-01 7 19184742 19184742 G A FERD3L Missense_Mutation p.R82C 0.32 tolerated(0.07) benign(0.01) TCGA-BR-4184-01 7 1997289 1997289 G A MAD1L1 Missense_Mutation p.A524V 0.23 tolerated(0.3) benign(0.001) TCGA-BR-4184-01 7 20199427 20199427 C T MACC1 Missense_Mutation p.R186H 0.15 deleterious(0.03) benign(0.027) TCGA-BR-4184-01 7 21627789 21627789 T C DNAH11 Silent p.C606C 0.20 TCGA-BR-4184-01 7 21631027 21631027 C T DNAH11 Silent p.N833N 0.11 TCGA-BR-4184-01 7 21943869 21943869 C T CDCA7L Silent p.T352T 0.25 TCGA-BR-4184-01 7 23240391 23240393 ATG - NUPL2 3'UTR 0.17 TCGA-BR-4184-01 7 23731194 23731194 C T FAM221A Missense_Mutation p.R206W 0.09 deleterious(0.02) probably_damaging(0.998) TCGA-BR-4184-01 7 24789387 24789387 C T DFNA5 Missense_Mutation p.A3T 0.07 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 7 24839866 24839866 C T OSBPL3 Missense_Mutation p.G867D 0.19 tolerated(0.21) possibly_damaging(0.697) TCGA-BR-4184-01 7 2698584 2698584 G A TTYH3 Missense_Mutation p.A479T 0.28 tolerated(0.08) benign(0.124) TCGA-BR-4184-01 7 27134298 27134298 C T HOXA1 Missense_Mutation p.A257T 0.19 deleterious(0) probably_damaging(0.982) TCGA-BR-4184-01 7 27135154 27135154 G A HOXA1 Silent p.C126C 0.26 TCGA-BR-4184-01 7 27140342 27140342 T - HOXA2 3'UTR 0.23 TCGA-BR-4184-01 7 27142204 27142204 C T HOXA2 5'UTR 0.25 TCGA-BR-4184-01 7 27185359 27185359 C T HOXA6 Missense_Mutation p.R207H 0.29 deleterious(0) probably_damaging(0.991) TCGA-BR-4184-01 7 27224781 27224781 C A HOXA11 5'UTR 0.21 TCGA-BR-4184-01 7 2740354 2740354 G A AMZ1 Missense_Mutation p.R90H 0.24 deleterious(0.01) benign(0.035) TCGA-BR-4184-01 7 2963993 2963993 C T CARD11 Missense_Mutation p.S605N 0.21 tolerated(0.29) benign(0.001) TCGA-BR-4184-01 7 31378581 31378581 G A NEUROD6 Missense_Mutation p.A101V 0.23 deleterious(0) benign(0.024) TCGA-BR-4184-01 7 31592727 31592727 C T CCDC129 Missense_Mutation p.A56V 0.31 tolerated(0.1) benign(0.037) TCGA-BR-4184-01 7 33945297 33945297 C T BMPER Silent p.C24C 0.15 TCGA-BR-4184-01 7 35144294 35144294 G A DPY19L2P1 RNA 0.21 TCGA-BR-4184-01 7 37253022 37253022 G A ELMO1 Missense_Mutation p.A291V 0.21 deleterious(0) probably_damaging(0.998) TCGA-BR-4184-01 7 37264526 37264526 G A ELMO1 Missense_Mutation p.A220V 0.25 deleterious(0.03) probably_damaging(0.999) TCGA-BR-4184-01 7 37780303 37780303 T C GPR141 Missense_Mutation p.F103S 0.16 deleterious(0) probably_damaging(0.998) TCGA-BR-4184-01 7 37947223 37947223 T C SFRP4 Missense_Mutation p.D300G 0.21 tolerated_low_confidence(0.43) benign(0.016) TCGA-BR-4184-01 7 38279756 38279756 G A TRGC2 Silent p.L147L 0.38 TCGA-BR-4184-01 7 3991379 3991379 G T SDK1 Missense_Mutation p.S326I 0.17 tolerated(0.17) benign(0.027) TCGA-BR-4184-01 7 41729601 41729601 G A INHBA Missense_Mutation p.R310W 0.35 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 7 42003913 42003913 T - GLI3 3'UTR 0.32 TCGA-BR-4184-01 7 42085021 42085021 G A GLI3 Missense_Mutation p.T263M 0.26 deleterious(0.02) benign(0.411) TCGA-BR-4184-01 7 42967003 42967003 C T PSMA2 Missense_Mutation p.A33T 0.42 tolerated(0.72) possibly_damaging(0.845) TCGA-BR-4184-01 7 43548760 43548762 CTC - HECW1 Intron 0.22 TCGA-BR-4184-01 7 43580834 43580834 G T HECW1 Missense_Mutation p.R1364S 0.18 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 7 43594297 43594297 C T HECW1 Silent p.S1539S 0.22 TCGA-BR-4184-01 7 43982539 43982539 T C UBE2D4 Intron 0.27 TCGA-BR-4184-01 7 44092477 44092477 C T DBNL Silent p.G88G 0.39 TCGA-BR-4184-01 7 44611252 44611252 G A DDX56 Silent p.D243D 0.25 TCGA-BR-4184-01 7 44796067 44796067 G A ZMIZ2 Missense_Mutation p.A32T 0.33 tolerated(1) benign(0.002) TCGA-BR-4184-01 7 45010231 45010231 C T MYO1G Missense_Mutation p.V393M 0.37 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 7 45222982 45222982 C T RAMP3 Missense_Mutation p.R140C 0.17 tolerated(0.07) benign(0.019) TCGA-BR-4184-01 7 45662269 45662269 C T ADCY1 Missense_Mutation p.A316V 0.29 deleterious(0.01) probably_damaging(0.992) TCGA-BR-4184-01 7 45717589 45717589 G A ADCY1 Missense_Mutation p.R576H 0.10 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 7 47409180 47409180 C T TNS3 Missense_Mutation p.A355T 0.37 deleterious(0) probably_damaging(0.93) TCGA-BR-4184-01 7 47842892 47842892 G A PKD1L1 Silent p.C2626C 0.20 TCGA-BR-4184-01 7 48280633 48280633 G A ABCA13 Missense_Mutation p.G411D 0.22 benign(0.015) TCGA-BR-4184-01 7 48314637 48314637 G A ABCA13 Missense_Mutation p.A1792T 0.09 benign(0.015) TCGA-BR-4184-01 7 48318199 48318199 G A ABCA13 Missense_Mutation p.A2470T 0.24 benign(0.017) TCGA-BR-4184-01 7 48413962 48413962 G A ABCA13 Missense_Mutation p.A3718T 0.33 probably_damaging(0.997) TCGA-BR-4184-01 7 48413980 48413980 T - ABCA13 Frame_Shift_Del p.F3725Lfs*26 0.12 TCGA-BR-4184-01 7 48450180 48450180 C T ABCA13 Missense_Mutation p.A4045V 0.11 benign(0.319) TCGA-BR-4184-01 7 4871777 4871777 C T RADIL Silent p.A483A 0.27 TCGA-BR-4184-01 7 50514928 50514928 C T FIGNL1 Missense_Mutation p.A20T 0.12 tolerated(0.39) benign(0.006) TCGA-BR-4184-01 7 50531075 50531075 T - DDC Frame_Shift_Del p.I433Sfs*98 0.19 TCGA-BR-4184-01 7 50611704 50611704 C T DDC Missense_Mutation p.R27H 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-BR-4184-01 7 50771543 50771543 C T GRB10 Silent p.Q38Q 0.08 TCGA-BR-4184-01 7 5097398 5097398 C T RBAK-RBAKDN Nonsense_Mutation p.Q76* 0.24 TCGA-BR-4184-01 7 5331433 5331433 C T SLC29A4 Silent p.T175T 0.42 TCGA-BR-4184-01 7 55220348 55220348 C T EGFR Silent p.S246S 0.22 TCGA-BR-4184-01 7 55249259 55249259 C T EGFR Intron 0.23 TCGA-BR-4184-01 7 5541130 5541130 C T FBXL18 Missense_Mutation p.R257H 0.36 tolerated(0.21) probably_damaging(0.999) TCGA-BR-4184-01 7 55479775 55479775 C T LANCL2 Missense_Mutation p.A334V 0.31 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 7 5568056 5568056 C T ACTB Missense_Mutation p.A220T 0.28 deleterious_low_confidence(0.03) benign(0.349) TCGA-BR-4184-01 7 5568123 5568123 G T ACTB Silent p.G197G 0.22 TCGA-BR-4184-01 7 56122107 56122107 G A CCT6A Missense_Mutation p.A83T 0.21 deleterious(0) possibly_damaging(0.791) TCGA-BR-4184-01 7 5792588 5792588 C T RNF216 Silent p.G30G 0.18 TCGA-BR-4184-01 7 65425838 65425838 G A GUSB 3'UTR 0.12 TCGA-BR-4184-01 7 65439577 65439577 G A GUSB Nonsense_Mutation p.Q394* 0.17 TCGA-BR-4184-01 7 6791127 6791127 A - RSPH10B2 5'Flank 0.22 TCGA-BR-4184-01 7 6836263 6836263 C T RSPH10B2 Silent p.Y766Y 0.06 TCGA-BR-4184-01 7 70255333 70255333 G A AUTS2 Missense_Mutation p.R1044H 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-BR-4184-01 7 72413409 72413409 G A POM121 Silent p.P694P 0.25 TCGA-BR-4184-01 7 72413634 72413634 G A POM121 Silent p.T769T 0.28 TCGA-BR-4184-01 7 72722781 72722781 G A NSUN5 Silent p.L3L 0.19 TCGA-BR-4184-01 7 72891452 72891452 C T BAZ1B Missense_Mutation p.R780Q 0.17 deleterious(0.01) probably_damaging(0.997) TCGA-BR-4184-01 7 73474271 73474271 T C ELN Silent p.G490G 0.30 TCGA-BR-4184-01 7 73636001 73636001 C T LAT2 Missense_Mutation p.R123W 0.15 deleterious(0.04) benign(0.001) TCGA-BR-4184-01 7 73944220 73944220 G A GTF2IRD1 Missense_Mutation p.R448H 0.32 deleterious(0) probably_damaging(0.982) TCGA-BR-4184-01 7 75068501 75068501 G A POM121C Missense_Mutation p.R77C 0.24 tolerated(0.07) benign(0.06) TCGA-BR-4184-01 7 75608862 75608862 C T POR Nonsense_Mutation p.R111* 0.16 TCGA-BR-4184-01 7 77407902 77407902 G A RSBN1L Missense_Mutation p.R653H 0.26 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 7 77824371 77824371 G A MAGI2 Nonsense_Mutation p.R697* 0.10 TCGA-BR-4184-01 7 796464 796464 G A HEATR2 Missense_Mutation p.V435M 0.18 deleterious(0) probably_damaging(0.99) TCGA-BR-4184-01 7 80088124 80088124 G C GNAT3 Missense_Mutation p.L310V 0.42 deleterious(0.02) probably_damaging(0.994) TCGA-BR-4184-01 7 803547 803547 G A HEATR2 Silent p.S573S 0.11 TCGA-BR-4184-01 7 82390055 82390055 T - PCLO Frame_Shift_Del p.K5063Rfs*2 0.19 TCGA-BR-4184-01 7 825235 825235 C T HEATR2 Missense_Mutation p.A838V 0.22 tolerated(0.11) benign(0.071) TCGA-BR-4184-01 7 82581328 82581328 G A PCLO Missense_Mutation p.P2981S 0.08 unknown(0) TCGA-BR-4184-01 7 82595088 82595089 - T PCLO Frame_Shift_Ins p.T1339Nfs*6 0.08 TCGA-BR-4184-01 7 83590759 83590759 C A SEMA3A Missense_Mutation p.K748N 0.10 deleterious(0.02) possibly_damaging(0.848) TCGA-BR-4184-01 7 86542475 86542475 C T KIAA1324L Missense_Mutation p.A593T 0.27 deleterious(0.02) benign(0.003) TCGA-BR-4184-01 7 87006753 87006753 G A CROT Missense_Mutation p.G350D 0.15 deleterious(0.01) possibly_damaging(0.875) TCGA-BR-4184-01 7 87027909 87027909 T - CROT Frame_Shift_Del p.C626Vfs*6 0.26 TCGA-BR-4184-01 7 87051451 87051452 - A ABCB4 Frame_Shift_Ins p.T768Yfs*26 0.17 TCGA-BR-4184-01 7 87160729 87160729 G A ABCB1 Nonsense_Mutation p.Q856* 0.08 TCGA-BR-4184-01 7 87533646 87533646 A G DBF4 Missense_Mutation p.N322D 0.21 tolerated(0.09) benign(0.386) TCGA-BR-4184-01 7 888056 888056 C T SUN1 Intron 0.26 TCGA-BR-4184-01 7 90747451 90747451 A G CDK14 Missense_Mutation p.K438E 0.25 deleterious(0.03) benign(0.004) TCGA-BR-4184-01 7 91503707 91503707 C T MTERF Missense_Mutation p.R134H 0.22 tolerated(0.11) possibly_damaging(0.56) TCGA-BR-4184-01 7 91652318 91652318 G A AKAP9 Silent p.P1381P 0.20 TCGA-BR-4184-01 7 92098886 92098886 A - ERVW-1 Frame_Shift_Del p.F270Lfs*11 0.18 TCGA-BR-4184-01 7 92099158 92099158 C T ERVW-1 Missense_Mutation p.A180T 0.10 tolerated(0.2) benign(0.217) TCGA-BR-4184-01 7 92099550 92099550 G A ERVW-1 Missense_Mutation p.A49V 0.12 deleterious_low_confidence(0.04) benign(0.139) TCGA-BR-4184-01 7 92732197 92732197 G A SAMD9 Missense_Mutation p.L1072F 0.13 tolerated(0.7) benign(0.01) TCGA-BR-4184-01 7 92848701 92848701 G A HEPACAM2 Missense_Mutation p.A48V 0.23 deleterious(0.01) possibly_damaging(0.882) TCGA-BR-4184-01 7 92987813 92987813 T - CCDC132 3'UTR 0.26 TCGA-BR-4184-01 7 93519977 93519977 C T TFPI2 Missense_Mutation p.R5H 0.33 tolerated(0.61) possibly_damaging(0.84) TCGA-BR-4184-01 7 94057646 94057646 G A COL1A2 Missense_Mutation p.A1190T 0.22 unknown(0) TCGA-BR-4184-01 7 95157128 95157128 C T ASB4 Missense_Mutation p.A164V 0.21 deleterious(0) possibly_damaging(0.657) TCGA-BR-4184-01 7 95157168 95157168 G A ASB4 Silent p.T177T 0.13 TCGA-BR-4184-01 7 97850998 97850998 C T TECPR1 Silent p.T1044T 0.30 TCGA-BR-4184-01 7 98254261 98254261 C T NPTX2 Missense_Mutation p.A224V 0.22 tolerated(0.11) possibly_damaging(0.753) TCGA-BR-4184-01 7 98522829 98522829 C T TRRAP Missense_Mutation p.A973V 0.21 probably_damaging(0.954) TCGA-BR-4184-01 7 98528335 98528336 - G TRRAP Frame_Shift_Ins p.V1161Cfs*5 0.23 TCGA-BR-4184-01 7 98528370 98528370 C T TRRAP Missense_Mutation p.R1170W 0.11 possibly_damaging(0.872) TCGA-BR-4184-01 7 98586514 98586514 C T TRRAP Silent p.G3176G 0.31 TCGA-BR-4184-01 7 98655043 98655043 C T SMURF1 Missense_Mutation p.G112E 0.11 deleterious(0.04) probably_damaging(0.996) TCGA-BR-4184-01 7 99662020 99662020 C T ZSCAN21 Missense_Mutation p.A401V 0.09 deleterious(0) possibly_damaging(0.834) TCGA-BR-4184-01 7 99808640 99808640 C T STAG3 Missense_Mutation p.A1082V 0.25 tolerated(0.18) benign(0.001) TCGA-BR-4184-01 8 100866085 100866085 A G VPS13B Missense_Mutation p.I3515V 0.20 tolerated(0.53) benign(0) TCGA-BR-4184-01 8 101018332 101018332 C T RGS22 Silent p.E789E 0.36 TCGA-BR-4184-01 8 101153265 101153265 T C FBXO43 Missense_Mutation p.D406G 0.11 tolerated(0.45) benign(0) TCGA-BR-4184-01 8 101232554 101232554 C T SPAG1 Missense_Mutation p.A528V 0.19 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 8 102731525 102731525 G A NCALD Silent p.D111D 0.16 TCGA-BR-4184-01 8 103289349 103289349 T - UBR5 Frame_Shift_Del p.E2121Kfs*28 0.38 TCGA-BR-4184-01 8 103324394 103324395 - T UBR5 Frame_Shift_Ins p.T744Nfs*29 0.26 TCGA-BR-4184-01 8 104340603 104340603 C T FZD6 Silent p.C500C 0.13 TCGA-BR-4184-01 8 104390323 104390323 A G CTHRC1 Silent p.L147L 0.16 TCGA-BR-4184-01 8 10464545 10464545 C T RP1L1 Missense_Mutation p.A2355T 0.23 unknown(0) TCGA-BR-4184-01 8 105509882 105509882 G A LRP12 Missense_Mutation p.R300C 0.14 deleterious(0.01) possibly_damaging(0.668) TCGA-BR-4184-01 8 10755900 10755900 G A XKR6 Silent p.G496G 0.22 TCGA-BR-4184-01 8 108264151 108264151 G A ANGPT1 Missense_Mutation p.H477Y 0.16 tolerated(0.46) probably_damaging(0.998) TCGA-BR-4184-01 8 108296925 108296925 T C ANGPT1 Missense_Mutation p.E397G 0.09 deleterious(0) probably_damaging(0.945) TCGA-BR-4184-01 8 108972962 108972962 G A RSPO2 Missense_Mutation p.R123C 0.17 deleterious(0) possibly_damaging(0.857) TCGA-BR-4184-01 8 11180276 11180276 C T MTMR9 Silent p.D543D 0.15 TCGA-BR-4184-01 8 11188883 11188883 C T SLC35G5 Missense_Mutation p.R90C 0.17 deleterious(0.01) benign(0.01) TCGA-BR-4184-01 8 11301681 11301681 C T FAM167A Silent p.E80E 0.24 TCGA-BR-4184-01 8 113293565 113293565 T A CSMD3 Missense_Mutation p.N3116Y 0.18 deleterious(0) probably_damaging(0.979) TCGA-BR-4184-01 8 113299389 113299389 G A CSMD3 Missense_Mutation p.R3079C 0.09 deleterious(0.01) benign(0.005) TCGA-BR-4184-01 8 113966981 113966981 G A CSMD3 Missense_Mutation p.A451V 0.27 tolerated(0.17) possibly_damaging(0.632) TCGA-BR-4184-01 8 11615827 11615827 G A GATA4 Missense_Mutation p.G391D 0.24 tolerated(0.08) benign(0.032) TCGA-BR-4184-01 8 116632282 116632282 C T TRPS1 Missense_Mutation p.V15I 0.36 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-BR-4184-01 8 117669464 117669464 A - EIF3H Frame_Shift_Del p.S183Pfs*5 0.15 TCGA-BR-4184-01 8 121013832 121013832 C T DEPTOR Nonsense_Mutation p.R225* 0.19 TCGA-BR-4184-01 8 121228677 121228677 T C COL14A1 Missense_Mutation p.I562T 0.06 deleterious(0.01) benign(0.011) TCGA-BR-4184-01 8 121259909 121259909 G A COL14A1 Missense_Mutation p.R846H 0.25 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 8 122641065 122641065 C T HAS2 Silent p.T172T 0.15 TCGA-BR-4184-01 8 124453601 124453601 C T WDYHV1 Silent p.G188G 0.22 TCGA-BR-4184-01 8 124707762 124707762 T - ANXA13 Frame_Shift_Del p.I192Sfs*20 0.23 TCGA-BR-4184-01 8 125555399 125555399 C T NDUFB9 Missense_Mutation p.A58V 0.12 tolerated(0.68) benign(0.001) TCGA-BR-4184-01 8 125565387 125565387 G A MTSS1 Missense_Mutation p.A705V 0.07 tolerated(0.75) benign(0.044) TCGA-BR-4184-01 8 126021249 126021249 C T SQLE Missense_Mutation p.L287F 0.19 tolerated(0.35) possibly_damaging(0.616) TCGA-BR-4184-01 8 126094634 126094634 T - KIAA0196 Frame_Shift_Del p.K136Nfs*94 0.17 TCGA-BR-4184-01 8 126194349 126194351 AAG - NSMCE2 In_Frame_Del p.E92del 0.08 TCGA-BR-4184-01 8 130789633 130789633 C A GSDMC Missense_Mutation p.E67D 0.23 deleterious(0.01) possibly_damaging(0.606) TCGA-BR-4184-01 8 131070228 131070228 A G ASAP1 Missense_Mutation p.V1096A 0.05 deleterious(0) probably_damaging(0.989) TCGA-BR-4184-01 8 131092151 131092151 G A ASAP1 Missense_Mutation p.S880L 0.21 tolerated(0.12) benign(0.023) TCGA-BR-4184-01 8 131104379 131104379 G A ASAP1 Silent p.G804G 0.25 TCGA-BR-4184-01 8 133014887 133014887 G A EFR3A Silent p.R748R 0.13 TCGA-BR-4184-01 8 133829268 133829268 G A PHF20L1 Missense_Mutation p.G440E 0.14 tolerated(0.14) benign(0.061) TCGA-BR-4184-01 8 133836264 133836264 A - PHF20L1 Frame_Shift_Del p.V535* 0.42 TCGA-BR-4184-01 8 133898950 133898950 C T TG Nonsense_Mutation p.R445* 0.15 TCGA-BR-4184-01 8 133961096 133961096 A G TG Missense_Mutation p.E1770G 0.18 tolerated(0.2) benign(0.08) TCGA-BR-4184-01 8 134232921 134232921 C T WISP1 Silent p.G149G 0.18 TCGA-BR-4184-01 8 134237815 134237815 A G WISP1 Missense_Mutation p.T265A 0.36 tolerated(0.16) benign(0) TCGA-BR-4184-01 8 134239993 134239993 C T WISP1 3'UTR 0.18 TCGA-BR-4184-01 8 134276800 134276800 G T NDRG1 Silent p.I65I 0.14 TCGA-BR-4184-01 8 135524778 135524778 C T ZFAT Missense_Mutation p.V1101I 0.18 tolerated(0.15) benign(0.403) TCGA-BR-4184-01 8 135614866 135614866 C T ZFAT Missense_Mutation p.V366I 0.20 deleterious(0.01) probably_damaging(0.979) TCGA-BR-4184-01 8 139668154 139668154 T C COL22A1 Missense_Mutation p.N1107D 0.05 unknown(0) TCGA-BR-4184-01 8 139696666 139696666 A G COL22A1 Splice_Site p.X1004_splice 0.19 TCGA-BR-4184-01 8 139833507 139833507 C T COL22A1 Missense_Mutation p.A373T 0.24 unknown(0) TCGA-BR-4184-01 8 141321405 141321405 C T TRAPPC9 Missense_Mutation p.A620T 0.29 tolerated(0.62) benign(0.001) TCGA-BR-4184-01 8 141570572 141570572 C T AGO2 Missense_Mutation p.E186K 0.16 tolerated(0.88) benign(0.015) TCGA-BR-4184-01 8 142151331 142151331 G A DENND3 Silent p.T97T 0.08 TCGA-BR-4184-01 8 142432393 142432393 G A PTP4A3 Missense_Mutation p.R18H 0.13 deleterious(0) probably_damaging(0.996) TCGA-BR-4184-01 8 143396392 143396392 G A TSNARE1 Missense_Mutation p.A349V 0.08 tolerated(0.1) benign(0.135) TCGA-BR-4184-01 8 144358659 144358659 C T GLI4 Silent p.C272C 0.16 TCGA-BR-4184-01 8 144993246 144993246 G A PLEC Silent p.G3718G 0.15 TCGA-BR-4184-01 8 145059646 145059646 G C PARP10 Missense_Mutation p.P203A 0.27 tolerated(0.33) benign(0.024) TCGA-BR-4184-01 8 145161285 145161285 C T MAF1 Missense_Mutation p.R140W 0.14 tolerated(0.12) benign(0.013) TCGA-BR-4184-01 8 145665463 145665463 G A TONSL Missense_Mutation p.A474V 0.21 tolerated(0.09) benign(0.037) TCGA-BR-4184-01 8 145692709 145692709 C - KIFC2 Frame_Shift_Del p.S154Lfs*56 0.20 TCGA-BR-4184-01 8 145739054 145739054 C T RECQL4 Missense_Mutation p.D701N 0.45 tolerated(0.09) benign(0.03) TCGA-BR-4184-01 8 145770858 145770858 C T ARHGAP39 Missense_Mutation p.V766M 0.16 deleterious(0) probably_damaging(0.967) TCGA-BR-4184-01 8 1497706 1497706 G A DLGAP2 Missense_Mutation p.A283T 0.15 tolerated(0.14) benign(0.003) TCGA-BR-4184-01 8 15508247 15508247 G A TUSC3 Missense_Mutation p.R117H 0.07 deleterious(0.01) benign(0.125) TCGA-BR-4184-01 8 1649446 1649446 A G DLGAP2 Silent p.R934R 0.24 TCGA-BR-4184-01 8 17092325 17092325 T C CNOT7 Missense_Mutation p.N173S 0.08 tolerated(0.69) benign(0.055) TCGA-BR-4184-01 8 17486241 17486241 G - PDGFRL Frame_Shift_Del p.G252Afs*32 0.27 TCGA-BR-4184-01 8 17824576 17824576 G A PCM1 Silent p.S1103S 0.21 TCGA-BR-4184-01 8 1814720 1814720 G A ARHGEF10 Missense_Mutation p.A192T 0.09 tolerated_low_confidence(0.06) benign(0.128) TCGA-BR-4184-01 8 1817418 1817418 T C ARHGEF10 Splice_Site p.X227_splice 0.14 TCGA-BR-4184-01 8 18725364 18725364 C T PSD3 Missense_Mutation p.R485H 0.17 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 8 19362852 19362852 C T CSGALNACT1 Missense_Mutation p.R165H 0.28 tolerated(0.05) probably_damaging(1) TCGA-BR-4184-01 8 20008198 20008198 A G SLC18A1 Missense_Mutation p.V358A 0.17 tolerated(0.52) benign(0.202) TCGA-BR-4184-01 8 20107710 20107710 G A LZTS1 Silent p.G438G 0.18 TCGA-BR-4184-01 8 21986447 21986447 C A HR Missense_Mutation p.E79D 0.21 deleterious_low_confidence(0.03) possibly_damaging(0.614) TCGA-BR-4184-01 8 22053019 22053019 C T BMP1 Missense_Mutation p.R562W 0.19 deleterious(0) probably_damaging(0.916) TCGA-BR-4184-01 8 22865592 22865592 G - RHOBTB2 Frame_Shift_Del p.P554Hfs*41 0.40 TCGA-BR-4184-01 8 23294525 23294525 G A ENTPD4 Silent p.S432S 0.11 TCGA-BR-4184-01 8 23299095 23299095 G A ENTPD4 Missense_Mutation p.A290V 0.42 tolerated(0.18) benign(0.072) TCGA-BR-4184-01 8 23702305 23702305 C T STC1 Missense_Mutation p.R241H 0.14 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-BR-4184-01 8 24167707 24167709 TAT - ADAM28 In_Frame_Del p.Y88del 0.29 TCGA-BR-4184-01 8 24771638 24771638 G A NEFM Missense_Mutation p.R111H 0.34 deleterious(0.01) unknown(0) TCGA-BR-4184-01 8 24771747 24771747 C T NEFM Silent p.G147G 0.50 TCGA-BR-4184-01 8 25209257 25209257 C T DOCK5 Missense_Mutation p.A922V 0.18 tolerated(0.55) benign(0.018) TCGA-BR-4184-01 8 25287255 25287255 T - KCTD9 3'UTR 0.50 TCGA-BR-4184-01 8 25708132 25708132 G A EBF2 Silent p.S558S 0.22 TCGA-BR-4184-01 8 26722237 26722237 C T ADRA1A Missense_Mutation p.A84T 0.19 deleterious(0.01) possibly_damaging(0.881) TCGA-BR-4184-01 8 26722276 26722276 C T ADRA1A Missense_Mutation p.A71T 0.17 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 8 27922179 27922179 C T NUGGC Missense_Mutation p.A261T 0.11 tolerated(0.21) benign(0.006) TCGA-BR-4184-01 8 2796038 2796038 G A CSMD1 3'Flank 0.50 TCGA-BR-4184-01 8 28214286 28214286 C T ZNF395 Missense_Mutation p.A162T 0.22 tolerated(0.07) possibly_damaging(0.902) TCGA-BR-4184-01 8 28575031 28575031 G A EXTL3 Silent p.V485V 0.13 TCGA-BR-4184-01 8 28600685 28600685 C T EXTL3 Missense_Mutation p.A835V 0.16 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 8 28876412 28876412 G A HMBOX1 Missense_Mutation p.C278Y 0.18 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 8 28967445 28967445 C T KIF13B Missense_Mutation p.R1358H 0.17 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 8 30565642 30565642 G A GSR Missense_Mutation p.R147W 0.09 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 8 30651531 30651531 G A PPP2CB Missense_Mutation p.R214C 0.18 deleterious(0) probably_damaging(0.996) TCGA-BR-4184-01 8 3205517 3205517 T C CSMD1 Silent p.L1157L 0.14 TCGA-BR-4184-01 8 32453511 32453511 A - NRG1 Frame_Shift_Del p.K91Sfs*24 0.16 TCGA-BR-4184-01 8 32618055 32618055 C A NRG1 Intron 0.22 TCGA-BR-4184-01 8 33319041 33319041 C T FUT10 5'UTR 0.27 TCGA-BR-4184-01 8 35544118 35544118 A G UNC5D Silent p.E325E 0.16 TCGA-BR-4184-01 8 36780102 36780102 G A KCNU1 Silent p.T897T 0.15 TCGA-BR-4184-01 8 37730004 37730004 C T RAB11FIP1 Silent p.A772A 0.10 TCGA-BR-4184-01 8 37914773 37914773 C T EIF4EBP1 Missense_Mutation p.A107V 0.21 tolerated(0.37) benign(0.007) TCGA-BR-4184-01 8 38271528 38271528 G A FGFR1 Missense_Mutation p.R765W 0.26 deleterious(0) probably_damaging(0.989) TCGA-BR-4184-01 8 38386081 38386081 A C C8orf86 Silent p.L25L 0.12 TCGA-BR-4184-01 8 38677330 38677330 G A TACC1 Missense_Mutation p.A190T 0.18 tolerated(0.07) benign(0.005) TCGA-BR-4184-01 8 38810831 38810831 G A PLEKHA2 Missense_Mutation p.R240H 0.16 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 8 38832617 38832617 G A HTRA4 Silent p.A178A 0.22 TCGA-BR-4184-01 8 41790423 41790423 C T KAT6A Missense_Mutation p.S1772N 0.08 unknown(0) TCGA-BR-4184-01 8 41791549 41791549 C T KAT6A Missense_Mutation p.E1397K 0.10 unknown(0) TCGA-BR-4184-01 8 42038027 42038027 C T PLAT Missense_Mutation p.A356T 0.14 deleterious(0.05) probably_damaging(1) TCGA-BR-4184-01 8 42587142 42587142 G A CHRNB3 Missense_Mutation p.R231H 0.13 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 8 42958728 42958728 G A POMK Missense_Mutation p.A13T 0.28 tolerated_low_confidence(0.65) benign(0) TCGA-BR-4184-01 8 43147674 43147674 A C POTEA RNA 0.14 TCGA-BR-4184-01 8 48701554 48701555 - T PRKDC Frame_Shift_Ins p.N3604Kfs*3 0.11 TCGA-BR-4184-01 8 48713457 48713457 G A PRKDC Missense_Mutation p.A3337V 0.09 possibly_damaging(0.471) TCGA-BR-4184-01 8 48772316 48772316 A G PRKDC Silent p.G2020G 0.15 TCGA-BR-4184-01 8 49643974 49643974 A T EFCAB1 Missense_Mutation p.D49E 0.22 deleterious(0.03) possibly_damaging(0.728) TCGA-BR-4184-01 8 54628573 54628573 C T ATP6V1H Missense_Mutation p.G468D 0.29 deleterious(0) possibly_damaging(0.691) TCGA-BR-4184-01 8 55541823 55541823 G A RP1 Missense_Mutation p.G1794D 0.16 tolerated(0.17) benign(0.071) TCGA-BR-4184-01 8 56436092 56436092 A G XKR4 Missense_Mutation p.E420G 0.18 tolerated(0.31) probably_damaging(0.995) TCGA-BR-4184-01 8 57078977 57078977 C T PLAG1 Missense_Mutation p.S443N 0.13 tolerated(0.12) benign(0.038) TCGA-BR-4184-01 8 57079635 57079635 G A PLAG1 Nonsense_Mutation p.R224* 0.15 TCGA-BR-4184-01 8 57219270 57219270 A - SDR16C5 Frame_Shift_Del p.F225Lfs*2 0.14 TCGA-BR-4184-01 8 57358283 57358283 A G PENK Intron 0.27 TCGA-BR-4184-01 8 59058997 59058997 G A FAM110B Missense_Mutation p.A70T 0.27 tolerated(1) benign(0.347) TCGA-BR-4184-01 8 59555553 59555553 G A NSMAF Missense_Mutation p.H78Y 0.22 deleterious(0.03) benign(0.062) TCGA-BR-4184-01 8 59728227 59728227 C T TOX Silent p.S354S 0.16 TCGA-BR-4184-01 8 64099768 64099768 C A YTHDF3 Missense_Mutation p.A399D 0.34 tolerated(0.27) possibly_damaging(0.82) TCGA-BR-4184-01 8 6420295 6420295 C T ANGPT2 Missense_Mutation p.R54H 0.11 tolerated(0.18) probably_damaging(0.927) TCGA-BR-4184-01 8 6614919 6614919 T C AGPAT5 3'UTR 0.17 TCGA-BR-4184-01 8 67061935 67061935 G A TRIM55 Missense_Mutation p.G220D 0.17 deleterious(0.01) benign(0.273) TCGA-BR-4184-01 8 67488453 67488453 T - MYBL1 Frame_Shift_Del p.N420Tfs*13 0.26 TCGA-BR-4184-01 8 67734620 67734620 G T SGK3 Missense_Mutation p.A115S 0.15 tolerated(0.82) benign(0.006) TCGA-BR-4184-01 8 67752239 67752239 T - SGK3 Frame_Shift_Del p.F250Sfs*33 0.36 TCGA-BR-4184-01 8 68169965 68169965 A G ARFGEF1 Splice_Site p.X842_splice 0.15 TCGA-BR-4184-01 8 68956736 68956736 G A PREX2 Missense_Mutation p.S285N 0.19 tolerated(0.11) benign(0.005) TCGA-BR-4184-01 8 69021701 69021701 G A PREX2 Missense_Mutation p.A997T 0.24 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-BR-4184-01 8 72156850 72156850 A - EYA1 Frame_Shift_Del p.F376Lfs*4 0.21 TCGA-BR-4184-01 8 72968043 72968043 A G TRPA1 Silent p.C414C 0.20 TCGA-BR-4184-01 8 73934470 73934470 A - TERF1 Frame_Shift_Del p.N187Mfs*30 0.09 TCGA-BR-4184-01 8 74526000 74526000 T - STAU2 Frame_Shift_Del p.K290Nfs*6 0.23 TCGA-BR-4184-01 8 77763549 77763549 C T ZFHX4 Silent p.P1464P 0.20 TCGA-BR-4184-01 8 77763597 77763597 C A ZFHX4 Missense_Mutation p.D1480E 0.11 benign(0) TCGA-BR-4184-01 8 77766285 77766285 T C ZFHX4 Silent p.A2376A 0.08 TCGA-BR-4184-01 8 77766752 77766752 C T ZFHX4 Missense_Mutation p.P2532L 0.11 probably_damaging(0.996) TCGA-BR-4184-01 8 81577073 81577073 C T ZNF704 Missense_Mutation p.V302M 0.20 deleterious(0) possibly_damaging(0.852) TCGA-BR-4184-01 8 82195629 82195629 C T FABP5 Silent p.G36G 0.14 TCGA-BR-4184-01 8 86357402 86357402 C T CA3 Silent p.G154G 0.14 TCGA-BR-4184-01 8 87076406 87076406 T - PSKH2 Frame_Shift_Del p.S214Vfs*6 0.16 TCGA-BR-4184-01 8 87393781 87393781 G A WWP1 Missense_Mutation p.R86H 0.38 tolerated(1) benign(0) TCGA-BR-4184-01 8 87447904 87447904 C T WWP1 Nonsense_Mutation p.Q574* 0.09 TCGA-BR-4184-01 8 8869247 8869247 G A ERI1 Silent p.T161T 0.17 TCGA-BR-4184-01 8 90937134 90937134 C T OSGIN2 Missense_Mutation p.R342C 0.15 tolerated(0.1) benign(0.002) TCGA-BR-4184-01 8 92998493 92998493 G A RUNX1T1 Missense_Mutation p.R391W 0.06 deleterious(0) probably_damaging(0.967) TCGA-BR-4184-01 8 93017525 93017525 C T RUNX1T1 Missense_Mutation p.A198T 0.22 tolerated(0.14) benign(0.033) TCGA-BR-4184-01 8 95186357 95186357 T - CDH17 Frame_Shift_Del p.T186Rfs*14 0.09 TCGA-BR-4184-01 8 95523709 95523709 G A KIAA1429 Missense_Mutation p.R1032C 0.20 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 8 95531563 95531563 A - KIAA1429 Frame_Shift_Del p.F721Lfs*11 0.28 TCGA-BR-4184-01 8 9567472 9567472 C T TNKS Missense_Mutation p.A529V 0.31 tolerated(0.14) possibly_damaging(0.771) TCGA-BR-4184-01 8 95680362 95680362 G A ESRP1 Missense_Mutation p.A373T 0.10 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 8 95886789 95886789 C T INTS8 Nonsense_Mutation p.R883* 0.15 TCGA-BR-4184-01 8 9605598 9605598 C T TNKS Missense_Mutation p.A903V 0.11 deleterious(0.02) probably_damaging(0.996) TCGA-BR-4184-01 8 9605648 9605648 G A TNKS Missense_Mutation p.A920T 0.15 tolerated(0.09) probably_damaging(0.996) TCGA-BR-4184-01 8 96166313 96166313 G A PLEKHF2 Missense_Mutation p.R14H 0.25 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 8 97157131 97157131 C T GDF6 Missense_Mutation p.G343D 0.18 deleterious(0) probably_damaging(0.959) TCGA-BR-4184-01 8 98827574 98827574 C T LAPTM4B Missense_Mutation p.A168V 0.18 tolerated(0.13) benign(0.158) TCGA-BR-4184-01 9 100245401 100245401 G A TDRD7 Missense_Mutation p.A895T 0.28 tolerated(0.38) benign(0.014) TCGA-BR-4184-01 9 100420938 100420938 C T NCBP1 Missense_Mutation p.R464C 0.23 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 9 100431913 100431913 C T NCBP1 Silent p.C728C 0.27 TCGA-BR-4184-01 9 100672390 100672390 C T C9orf156 Silent p.Q306Q 0.21 TCGA-BR-4184-01 9 100845320 100845320 A - NANS Frame_Shift_Del p.I357Sfs*? 0.19 TCGA-BR-4184-01 9 103054969 103054969 C T INVS Silent p.R810R 0.21 TCGA-BR-4184-01 9 104079735 104079735 C A LPPR1 Missense_Mutation p.A301D 0.25 tolerated(0.15) benign(0.261) TCGA-BR-4184-01 9 104125184 104125184 G A BAAT Silent p.N261N 0.06 TCGA-BR-4184-01 9 104302555 104302555 C T RNF20 Missense_Mutation p.A67V 0.19 tolerated(0.32) benign(0) TCGA-BR-4184-01 9 1057324 1057324 G A DMRT2 3'UTR 0.23 TCGA-BR-4184-01 9 107573078 107573078 T C ABCA1 Intron 0.18 TCGA-BR-4184-01 9 108457045 108457045 G A TMEM38B Missense_Mutation p.R35H 0.17 tolerated(0.42) benign(0.002) TCGA-BR-4184-01 9 111659242 111659242 C T IKBKAP Missense_Mutation p.E860K 0.28 tolerated(0.09) benign(0.081) TCGA-BR-4184-01 9 111947811 111947811 C A EPB41L4B Missense_Mutation p.E792D 0.23 tolerated_low_confidence(0.08) benign(0.073) TCGA-BR-4184-01 9 112042125 112042125 A C EPB41L4B Missense_Mutation p.L128R 0.27 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 9 112899061 112899061 C T PALM2-AKAP2 Missense_Mutation p.R413C 0.25 deleterious(0.02) benign(0.241) TCGA-BR-4184-01 9 113261516 113261516 G A SVEP1 Missense_Mutation p.R496C 0.28 possibly_damaging(0.582) TCGA-BR-4184-01 9 113637839 113637839 G A LPAR1 Silent p.S319S 0.32 TCGA-BR-4184-01 9 113704425 113704425 C A LPAR1 Missense_Mutation p.Q23H 0.22 tolerated(0.26) benign(0.259) TCGA-BR-4184-01 9 115336875 115336875 G A KIAA1958 Missense_Mutation p.R172H 0.09 deleterious(0.01) possibly_damaging(0.908) TCGA-BR-4184-01 9 115641971 115641971 C T SLC46A2 3'UTR 0.18 TCGA-BR-4184-01 9 116022769 116022769 C T SLC31A1 3'UTR 0.44 TCGA-BR-4184-01 9 116053015 116053015 G T PRPF4 Missense_Mutation p.R395L 0.22 deleterious(0) probably_damaging(0.992) TCGA-BR-4184-01 9 116080824 116080824 C T WDR31 Missense_Mutation p.A292T 0.20 tolerated(0.48) benign(0.124) TCGA-BR-4184-01 9 116130628 116130628 A G BSPRY Missense_Mutation p.Q216R 0.24 tolerated(0.86) benign(0.002) TCGA-BR-4184-01 9 117062910 117062910 G A COL27A1 Silent p.P1548P 0.20 TCGA-BR-4184-01 9 117070050 117070050 G A COL27A1 Missense_Mutation p.A1737T 0.34 unknown(0) TCGA-BR-4184-01 9 117188608 117188608 C T DFNB31 Missense_Mutation p.R350Q 0.10 tolerated(0.19) benign(0.008) TCGA-BR-4184-01 9 117804613 117804613 G A TNC Silent p.G1711G 0.24 TCGA-BR-4184-01 9 119124887 119124887 T C PAPPA Missense_Mutation p.V1455A 0.24 tolerated(0.32) benign(0.002) TCGA-BR-4184-01 9 119976705 119976705 C T ASTN2 Missense_Mutation p.S316N 0.22 deleterious_low_confidence(0) unknown(0) TCGA-BR-4184-01 9 120476537 120476537 G T TLR4 Missense_Mutation p.D711Y 0.28 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 9 121929360 121929360 G C BRINP1 3'UTR 0.24 TCGA-BR-4184-01 9 123220813 123220813 C T CDK5RAP2 Missense_Mutation p.A764T 0.25 tolerated(0.62) benign(0) TCGA-BR-4184-01 9 123308012 123308012 C A CDK5RAP2 Missense_Mutation p.E121D 0.31 tolerated(0.12) possibly_damaging(0.523) TCGA-BR-4184-01 9 123769199 123769199 A C C5 Missense_Mutation p.V802G 0.28 deleterious(0) probably_damaging(0.939) TCGA-BR-4184-01 9 124064372 124064372 C T GSN Silent p.G92G 0.08 TCGA-BR-4184-01 9 124522353 124522353 C T DAB2IP Missense_Mutation p.R241C 0.31 deleterious(0) possibly_damaging(0.857) TCGA-BR-4184-01 9 124526054 124526054 C T DAB2IP Silent p.C424C 0.09 TCGA-BR-4184-01 9 124528868 124528868 C T DAB2IP Missense_Mutation p.A491V 0.19 deleterious(0) probably_damaging(0.99) TCGA-BR-4184-01 9 124543745 124543747 TGA - DAB2IP In_Frame_Del p.M1079del 0.12 TCGA-BR-4184-01 9 124975917 124975917 G A LHX6 Missense_Mutation p.A341V 0.21 deleterious(0.02) possibly_damaging(0.774) TCGA-BR-4184-01 9 125140215 125140215 C A PTGS1 Silent p.G44G 0.17 TCGA-BR-4184-01 9 125143979 125143979 C T PTGS1 Missense_Mutation p.R239C 0.33 deleterious(0) probably_damaging(0.994) TCGA-BR-4184-01 9 125424697 125424697 C T OR1L1 Missense_Mutation p.R235C 0.09 tolerated(0.19) benign(0.014) TCGA-BR-4184-01 9 125681251 125681251 G A ZBTB26 Silent p.A321A 0.26 TCGA-BR-4184-01 9 125898431 125898431 G A STRBP Silent p.G554G 0.23 TCGA-BR-4184-01 9 125941475 125941475 C T STRBP Missense_Mutation p.R12H 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-BR-4184-01 9 126132504 126132504 G A CRB2 Missense_Mutation p.R391H 0.24 tolerated(0.38) possibly_damaging(0.812) TCGA-BR-4184-01 9 126132729 126132729 G A CRB2 Missense_Mutation p.R466H 0.23 deleterious(0) possibly_damaging(0.812) TCGA-BR-4184-01 9 126133829 126133829 C T CRB2 Missense_Mutation p.A803V 0.28 tolerated(0.28) possibly_damaging(0.499) TCGA-BR-4184-01 9 126777465 126777465 C T LHX2 Missense_Mutation p.R130C 0.27 deleterious(0) probably_damaging(0.963) TCGA-BR-4184-01 9 127572560 127572560 G A OLFML2A Missense_Mutation p.A610T 0.19 tolerated(0.49) possibly_damaging(0.798) TCGA-BR-4184-01 9 128434766 128434766 C T MAPKAP1 Missense_Mutation p.V30I 0.33 tolerated(0.23) possibly_damaging(0.888) TCGA-BR-4184-01 9 129596269 129596269 C T ZBTB43 3'UTR 0.16 TCGA-BR-4184-01 9 130430453 130430453 G A STXBP1 Missense_Mutation p.A297T 0.21 deleterious(0.02) benign(0.059) TCGA-BR-4184-01 9 131262457 131262457 G A ODF2 Missense_Mutation p.A805T 0.26 tolerated(0.29) benign(0.095) TCGA-BR-4184-01 9 131475831 131475831 C T PKN3 Silent p.G382G 0.22 TCGA-BR-4184-01 9 131476578 131476578 G C PKN3 Missense_Mutation p.S472T 0.20 tolerated(0.08) probably_damaging(0.991) TCGA-BR-4184-01 9 131568288 131568288 G A TBC1D13 Missense_Mutation p.A357T 0.21 deleterious(0) probably_damaging(0.983) TCGA-BR-4184-01 9 131671260 131671260 T A LRRC8A Missense_Mutation p.I606N 0.22 deleterious(0) probably_damaging(0.991) TCGA-BR-4184-01 9 131760467 131760467 G A NUP188 Missense_Mutation p.R1130H 0.31 tolerated(0.15) benign(0.001) TCGA-BR-4184-01 9 131777084 131777084 C T SH3GLB2 Missense_Mutation p.R145H 0.15 deleterious(0.03) possibly_damaging(0.458) TCGA-BR-4184-01 9 132084806 132084806 A - C9orf106 RNA 0.26 TCGA-BR-4184-01 9 132571788 132571788 T - TOR1B Frame_Shift_Del p.F314Sfs*49 0.28 TCGA-BR-4184-01 9 132636952 132636952 G A USP20 Missense_Mutation p.R613H 0.12 tolerated(0.06) possibly_damaging(0.751) TCGA-BR-4184-01 9 133339508 133339508 A G ASS1 Missense_Mutation p.Q125R 0.20 deleterious(0) probably_damaging(0.98) TCGA-BR-4184-01 9 133738377 133738377 C T ABL1 Silent p.G278G 0.33 TCGA-BR-4184-01 9 133759406 133759406 C T ABL1 Nonsense_Mutation p.R596* 0.28 TCGA-BR-4184-01 9 133760767 133760767 C T ABL1 Silent p.G1049G 0.29 TCGA-BR-4184-01 9 133946996 133946996 C T LAMC3 Silent p.G1065G 0.38 TCGA-BR-4184-01 9 134002952 134002952 C A NUP214 Missense_Mutation p.D29E 0.24 unknown(0) TCGA-BR-4184-01 9 134003840 134003840 T - NUP214 Frame_Shift_Del p.F123Lfs*23 0.24 TCGA-BR-4184-01 9 134004682 134004682 G A NUP214 Missense_Mutation p.R137H 0.28 unknown(0) TCGA-BR-4184-01 9 134330540 134330540 G A PRRC2B Missense_Mutation p.G400S 0.14 tolerated(0.24) probably_damaging(0.931) TCGA-BR-4184-01 9 134351424 134351424 G A PRRC2B Missense_Mutation p.R1303H 0.47 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 9 135114555 135114555 C T NTNG2 Silent p.C373C 0.31 TCGA-BR-4184-01 9 135275547 135275547 G A TTF1 Missense_Mutation p.A489V 0.20 tolerated(1) benign(0.003) TCGA-BR-4184-01 9 135797351 135797351 G A TSC1 Missense_Mutation p.A173V 0.21 tolerated(0.08) benign(0.15) TCGA-BR-4184-01 9 135804209 135804209 G - TSC1 Frame_Shift_Del p.M18Cfs*8 0.29 TCGA-BR-4184-01 9 135931464 135931464 C T GTF3C5 Silent p.C418C 0.13 TCGA-BR-4184-01 9 136256456 136256456 G T C9orf96 Splice_Site p.X156_splice 0.08 TCGA-BR-4184-01 9 136319700 136319700 G A ADAMTS13 Missense_Mutation p.A1070T 0.45 tolerated(0.24) benign(0.013) TCGA-BR-4184-01 9 136508675 136508675 C T DBH Silent p.C295C 0.32 TCGA-BR-4184-01 9 136643996 136643996 G A VAV2 Missense_Mutation p.A593V 0.46 tolerated(0.86) probably_damaging(0.91) TCGA-BR-4184-01 9 136677305 136677305 G A VAV2 Silent p.C161C 0.23 TCGA-BR-4184-01 9 136913403 136913403 G A BRD3 Silent p.G296G 0.18 TCGA-BR-4184-01 9 137300846 137300846 G A RXRA Missense_Mutation p.R164H 0.09 deleterious(0.04) probably_damaging(1) TCGA-BR-4184-01 9 137309069 137309069 G A RXRA Missense_Mutation p.A226T 0.09 tolerated(0.25) benign(0.02) TCGA-BR-4184-01 9 137707473 137707473 G A COL5A1 Missense_Mutation p.A1356T 0.50 unknown(0) TCGA-BR-4184-01 9 137801620 137801620 G A FCN1 3'UTR 0.28 TCGA-BR-4184-01 9 138376878 138376878 G A PPP1R26 Silent p.P174P 0.27 TCGA-BR-4184-01 9 138395607 138395607 C T MRPS2 Silent p.G173G 0.20 TCGA-BR-4184-01 9 138557549 138557549 C T LCN9 Silent p.C142C 0.19 TCGA-BR-4184-01 9 138714394 138714394 C G CAMSAP1 Missense_Mutation p.G705R 0.24 tolerated(0.08) benign(0.019) TCGA-BR-4184-01 9 139113754 139113754 C T QSOX2 Missense_Mutation p.V237M 0.27 tolerated(0.14) benign(0.14) TCGA-BR-4184-01 9 139302298 139302298 C T SDCCAG3 Missense_Mutation p.A128T 0.09 tolerated(0.57) benign(0.002) TCGA-BR-4184-01 9 139311661 139311661 G A PMPCA Missense_Mutation p.A298T 0.23 deleterious(0.04) benign(0.063) TCGA-BR-4184-01 9 139358156 139358156 G A SEC16A Missense_Mutation p.R1495W 0.31 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 9 139391176 139391176 C T NOTCH1 Missense_Mutation p.A2339T 0.31 tolerated(0.41) benign(0.009) TCGA-BR-4184-01 9 139397687 139397687 G A NOTCH1 Missense_Mutation p.A1705V 0.20 deleterious(0) probably_damaging(0.997) TCGA-BR-4184-01 9 139407576 139407576 G A NOTCH1 Silent p.C788C 0.28 TCGA-BR-4184-01 9 139412321 139412321 G A NOTCH1 Nonsense_Mutation p.Q442* 0.36 TCGA-BR-4184-01 9 139701355 139701355 G A CCDC183 Intron 0.28 TCGA-BR-4184-01 9 139744537 139744537 G A PHPT1 Missense_Mutation p.R78H 0.20 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 9 139912013 139912013 G A ABCA2 Silent p.S781S 0.34 TCGA-BR-4184-01 9 139996028 139996028 G A MAN1B1 Silent p.P386P 0.30 TCGA-BR-4184-01 9 140002935 140002935 G A MAN1B1 Silent p.T664T 0.23 TCGA-BR-4184-01 9 140481457 140481457 G A ZMYND19 Silent p.G107G 0.31 TCGA-BR-4184-01 9 140672491 140672491 G A EHMT1 Missense_Mutation p.A726T 0.51 tolerated(0.15) possibly_damaging(0.846) TCGA-BR-4184-01 9 14150263 14150263 C T NFIB Silent p.T229T 0.06 TCGA-BR-4184-01 9 14775838 14775838 G A FREM1 Silent p.G1602G 0.08 TCGA-BR-4184-01 9 15472661 15472661 G A PSIP1 Missense_Mutation p.R316C 0.29 tolerated(0.11) probably_damaging(0.988) TCGA-BR-4184-01 9 15777674 15777674 T C CCDC171 Silent p.I916I 0.28 TCGA-BR-4184-01 9 15874641 15874641 C T CCDC171 Missense_Mutation p.P1194S 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-BR-4184-01 9 16552745 16552745 G A BNC2 Missense_Mutation p.T151M 0.30 tolerated(0.07) possibly_damaging(0.869) TCGA-BR-4184-01 9 16738415 16738415 T G BNC2 Missense_Mutation p.Q24H 0.31 deleterious_low_confidence(0) unknown(0) TCGA-BR-4184-01 9 18681926 18681926 C T ADAMTSL1 Silent p.C486C 0.23 TCGA-BR-4184-01 9 18706803 18706803 C T ADAMTSL1 Nonsense_Mutation p.R545* 0.33 TCGA-BR-4184-01 9 18770654 18770654 C T ADAMTSL1 Missense_Mutation p.R758C 0.21 deleterious(0.02) probably_damaging(0.982) TCGA-BR-4184-01 9 19346603 19346603 G A DENND4C Missense_Mutation p.R1230H 0.30 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 9 19379526 19379526 C T RPS6 Missense_Mutation p.A33T 0.13 tolerated(0.11) benign(0.05) TCGA-BR-4184-01 9 2058432 2058432 C T SMARCA2 Missense_Mutation p.R497W 0.25 benign(0.381) TCGA-BR-4184-01 9 2115922 2115922 C T SMARCA2 Missense_Mutation p.A1186V 0.26 possibly_damaging(0.499) TCGA-BR-4184-01 9 21165874 21165874 C T IFNA21 3'UTR 0.50 TCGA-BR-4184-01 9 21217077 21217077 G T IFNA16 Silent p.A76A 0.28 TCGA-BR-4184-01 9 2719001 2719001 G A KCNV2 Missense_Mutation p.G421D 0.22 deleterious(0) probably_damaging(0.998) TCGA-BR-4184-01 9 2811408 2811408 C T KIAA0020 Missense_Mutation p.A530T 0.25 deleterious(0.01) possibly_damaging(0.903) TCGA-BR-4184-01 9 2824797 2824797 G A KIAA0020 Missense_Mutation p.R352C 0.27 deleterious(0) possibly_damaging(0.836) TCGA-BR-4184-01 9 2829854 2829854 C T KIAA0020 Missense_Mutation p.A258T 0.32 deleterious(0.01) possibly_damaging(0.791) TCGA-BR-4184-01 9 32544122 32544122 T - TOPORS Frame_Shift_Del p.N134Tfs*19 0.33 TCGA-BR-4184-01 9 33675437 33675437 T A PTENP1 RNA 0.35 TCGA-BR-4184-01 9 34241362 34241362 G A UBAP1 Missense_Mutation p.M177I 0.21 tolerated(0.28) benign(0.019) TCGA-BR-4184-01 9 35045333 35045333 C A C9orf131 Missense_Mutation p.P903T 0.08 tolerated(0.32) benign(0.116) TCGA-BR-4184-01 9 35107927 35107927 G A FAM214B Silent p.S115S 0.11 TCGA-BR-4184-01 9 35736398 35736398 G A CREB3 Missense_Mutation p.R264H 0.11 deleterious(0.03) benign(0.271) TCGA-BR-4184-01 9 35799719 35799719 C T NPR2 Silent p.G326G 0.40 TCGA-BR-4184-01 9 37888210 37888210 A G SLC25A51 Missense_Mutation p.V113A 0.29 tolerated(0.57) benign(0.007) TCGA-BR-4184-01 9 405015 405015 T - DOCK8 Frame_Shift_Del p.F1113Lfs*2 0.29 TCGA-BR-4184-01 9 418150 418150 G T DOCK8 Silent p.L1261L 0.22 TCGA-BR-4184-01 9 4625438 4625438 C T SPATA6L Silent p.A128A 0.35 TCGA-BR-4184-01 9 4718478 4718478 C T AK3 Silent p.T168T 0.24 TCGA-BR-4184-01 9 4844593 4844593 C T RCL1 Missense_Mutation p.A260V 0.22 tolerated(0.76) benign(0.004) TCGA-BR-4184-01 9 6504628 6504628 C T UHRF2 Silent p.C733C 0.25 TCGA-BR-4184-01 9 69200164 69200164 G A FOXD4L6 3'UTR 0.25 TCGA-BR-4184-01 9 70484465 70484465 G A CBWD5 Missense_Mutation p.A83V 0.07 tolerated(0.09) benign(0.397) TCGA-BR-4184-01 9 71395787 71395788 GT - FAM122A Frame_Shift_Del p.V239Ifs*6 0.23 TCGA-BR-4184-01 9 72933542 72933542 C T SMC5 Missense_Mutation p.A640V 0.21 deleterious(0.05) possibly_damaging(0.846) TCGA-BR-4184-01 9 73151051 73151051 C T TRPM3 Missense_Mutation p.A1648T 0.19 tolerated_low_confidence(0.06) benign(0.042) TCGA-BR-4184-01 9 73151921 73151922 - A TRPM3 Frame_Shift_Ins p.K1358* 0.20 TCGA-BR-4184-01 9 77286710 77286710 G A RORB Missense_Mutation p.A373T 0.24 deleterious(0.01) benign(0.026) TCGA-BR-4184-01 9 78686647 78686647 C T PCSK5 Nonsense_Mutation p.R243* 0.15 TCGA-BR-4184-01 9 78969113 78969113 C T PCSK5 Silent p.C1717C 0.31 TCGA-BR-4184-01 9 79325763 79325763 G A PRUNE2 Missense_Mutation p.A476V 0.11 tolerated(0.33) benign(0.024) TCGA-BR-4184-01 9 79910752 79910752 C T VPS13A Nonsense_Mutation p.R1268* 0.26 TCGA-BR-4184-01 9 82227576 82227576 G T TLE4 Missense_Mutation p.E86D 0.20 deleterious(0.01) benign(0.162) TCGA-BR-4184-01 9 85914050 85914050 A - FRMD3 Frame_Shift_Del p.F326Lfs*44 0.18 TCGA-BR-4184-01 9 87486727 87486727 G A NTRK2 Intron 0.26 TCGA-BR-4184-01 9 90255318 90255318 T C DAPK1 Silent p.S245S 0.31 TCGA-BR-4184-01 9 90502104 90502104 A T SPATA31E1 Missense_Mutation p.N901I 0.29 tolerated(0.1) possibly_damaging(0.583) TCGA-BR-4184-01 9 90534188 90534188 C T SPATA31C1 Intron 0.23 TCGA-BR-4184-01 9 90585726 90585726 G A CDK20 Silent p.D155D 0.29 TCGA-BR-4184-01 9 91628425 91628425 G A SHC3 Silent p.S574S 0.25 TCGA-BR-4184-01 9 93983211 93983211 G A AUH Missense_Mutation p.A240V 0.31 deleterious(0) probably_damaging(0.994) TCGA-BR-4184-01 9 95007334 95007334 G A IARS Silent p.G937G 0.16 TCGA-BR-4184-01 9 95481525 95481525 C T BICD2 Missense_Mutation p.A468T 0.26 tolerated(0.56) benign(0.005) TCGA-BR-4184-01 9 96009888 96009888 G A WNK2 Missense_Mutation p.V536M 0.40 unknown(0) TCGA-BR-4184-01 9 96081439 96081439 C T C9orf129 Missense_Mutation p.G128E 0.22 tolerated_low_confidence(0.51) probably_damaging(0.969) TCGA-BR-4184-01 9 96324555 96324555 G A FAM120A Missense_Mutation p.G1005D 0.29 deleterious(0.02) possibly_damaging(0.645) TCGA-BR-4184-01 9 96415473 96415473 C T PHF2 Silent p.F205F 0.24 TCGA-BR-4184-01 9 99113327 99113327 T C SLC35D2 Intron 0.33 TCGA-BR-4184-01 9 99522503 99522503 G A ZNF510 Silent p.C203C 0.10 TCGA-BR-4184-01 9 99700170 99700170 G A NUTM2G Missense_Mutation p.E443K 0.18 deleterious(0) possibly_damaging(0.801) TCGA-BR-4184-01 X 100297067 100297067 C A TRMT2B Missense_Mutation p.S71I 0.15 tolerated(0.08) benign(0.07) TCGA-BR-4184-01 X 100505442 100505442 G A DRP2 Missense_Mutation p.S524N 0.14 tolerated(0.06) benign(0.007) TCGA-BR-4184-01 X 10085205 10085205 G A WWC3 Missense_Mutation p.R369H 0.72 tolerated(0.1) probably_damaging(0.997) TCGA-BR-4184-01 X 100879869 100879869 C T ARMCX3 5'UTR 0.71 TCGA-BR-4184-01 X 10092342 10092342 G A WWC3 Missense_Mutation p.A597T 0.16 tolerated(0.53) benign(0.005) TCGA-BR-4184-01 X 102339721 102339721 C T NXF3 Missense_Mutation p.G40D 0.10 deleterious(0.01) benign(0.009) TCGA-BR-4184-01 X 105178303 105178303 G A NRK Silent p.P1123P 0.82 TCGA-BR-4184-01 X 10535114 10535114 G A MID1 Silent p.G158G 0.52 TCGA-BR-4184-01 X 105450135 105450135 C T MUM1L1 Missense_Mutation p.A237V 0.19 tolerated(1) benign(0) TCGA-BR-4184-01 X 107331059 107331059 G A PSMD10 Silent p.G128G 0.48 TCGA-BR-4184-01 X 107422584 107422584 C T COL4A6 Missense_Mutation p.S740N 0.47 benign(0.442) TCGA-BR-4184-01 X 108691393 108691393 G A GUCY2F Missense_Mutation p.R492C 0.47 tolerated(0.2) benign(0) TCGA-BR-4184-01 X 108887403 108887403 C T ACSL4 Missense_Mutation p.R664Q 0.57 deleterious(0.01) benign(0.212) TCGA-BR-4184-01 X 109695400 109695400 G T RGAG1 Missense_Mutation p.A519S 0.54 tolerated(0.1) possibly_damaging(0.487) TCGA-BR-4184-01 X 109696693 109696693 T C RGAG1 Missense_Mutation p.S950P 0.10 tolerated(0.07) benign(0.126) TCGA-BR-4184-01 X 111698834 111698834 G A ZCCHC16 Missense_Mutation p.C293Y 0.12 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 X 11318840 11318840 A - AMELX 3'UTR 0.36 TCGA-BR-4184-01 X 114524308 114524308 C T LUZP4 5'Flank 0.22 TCGA-BR-4184-01 X 114536676 114536676 C T LUZP4 Missense_Mutation p.R71C 0.52 tolerated(0.18) benign(0) TCGA-BR-4184-01 X 114540908 114540908 C T LUZP4 Nonsense_Mutation p.R161* 0.50 TCGA-BR-4184-01 X 114877715 114877715 A G PLS3 Missense_Mutation p.S360G 0.54 tolerated(0.1) benign(0.007) TCGA-BR-4184-01 X 115303556 115303556 C T AGTR2 Missense_Mutation p.A8V 0.18 tolerated(0.65) benign(0) TCGA-BR-4184-01 X 117032956 117032956 C T KLHL13 Missense_Mutation p.G631D 0.09 deleterious(0) probably_damaging(0.996) TCGA-BR-4184-01 X 117722426 117722426 C T DOCK11 Silent p.D677D 0.58 TCGA-BR-4184-01 X 117773400 117773400 T C DOCK11 Missense_Mutation p.V1335A 0.15 tolerated(0.59) benign(0.005) TCGA-BR-4184-01 X 11793227 11793227 C T MSL3 3'UTR 0.24 TCGA-BR-4184-01 X 118723342 118723342 G A NKRF Silent p.Y697Y 0.13 TCGA-BR-4184-01 X 119419030 119419030 C T TMEM255A Missense_Mutation p.R179H 0.25 tolerated(0.05) possibly_damaging(0.868) TCGA-BR-4184-01 X 119504981 119504981 G A ATP1B4 Missense_Mutation p.A160T 0.14 tolerated(0.72) benign(0.252) TCGA-BR-4184-01 X 119760637 119760637 C T C1GALT1C1 Missense_Mutation p.A129T 0.10 tolerated(0.15) benign(0.082) TCGA-BR-4184-01 X 122537363 122537363 C T GRIA3 Missense_Mutation p.T429I 0.06 deleterious(0) possibly_damaging(0.885) TCGA-BR-4184-01 X 123185030 123185030 G A STAG2 Silent p.E359E 0.53 TCGA-BR-4184-01 X 123229279 123229279 G A STAG2 Missense_Mutation p.A1255T 0.44 tolerated_low_confidence(0.09) benign(0.121) TCGA-BR-4184-01 X 123514894 123514894 G A TENM1 Missense_Mutation p.A2564V 0.09 deleterious(0) possibly_damaging(0.601) TCGA-BR-4184-01 X 123517988 123517988 C T TENM1 Missense_Mutation p.A2265T 0.44 tolerated(0.11) benign(0.163) TCGA-BR-4184-01 X 123539084 123539084 C T TENM1 Missense_Mutation p.D1730N 0.19 tolerated(0.24) benign(0.11) TCGA-BR-4184-01 X 123556366 123556366 G T TENM1 Silent p.R1409R 0.50 TCGA-BR-4184-01 X 125299778 125299778 G A DCAF12L2 Missense_Mutation p.R44W 0.27 tolerated(0.19) benign(0.017) TCGA-BR-4184-01 X 125686328 125686328 C A DCAF12L1 Silent p.T88T 0.67 TCGA-BR-4184-01 X 12712493 12712493 T C FRMPD4 Missense_Mutation p.F285L 0.33 deleterious(0.03) probably_damaging(0.998) TCGA-BR-4184-01 X 12736508 12736508 C T FRMPD4 Missense_Mutation p.A1188V 0.14 deleterious_low_confidence(0) benign(0.283) TCGA-BR-4184-01 X 128696607 128696607 T C OCRL Missense_Mutation p.V363A 0.09 tolerated(0.75) possibly_damaging(0.588) TCGA-BR-4184-01 X 128718327 128718327 G A OCRL Missense_Mutation p.D708N 0.09 tolerated(0.19) probably_damaging(0.914) TCGA-BR-4184-01 X 12905875 12905875 C T TLR7 Nonsense_Mutation p.R750* 0.48 TCGA-BR-4184-01 X 129546424 129546424 C T RBMX2 Missense_Mutation p.R191C 0.28 tolerated(0.11) benign(0.443) TCGA-BR-4184-01 X 129546773 129546773 G A RBMX2 Missense_Mutation p.R307H 0.47 tolerated(1) unknown(0) TCGA-BR-4184-01 X 130415705 130415705 C T IGSF1 Missense_Mutation p.R487H 0.11 tolerated(0.37) benign(0.013) TCGA-BR-4184-01 X 132160413 132160413 T - USP26 Frame_Shift_Del p.G613Afs*26 0.45 TCGA-BR-4184-01 X 134421741 134421741 A C ZNF75D Silent p.P287P 0.24 TCGA-BR-4184-01 X 135593613 135593613 T C HTATSF1 Missense_Mutation p.L570P 0.11 tolerated_low_confidence(0.06) benign(0.015) TCGA-BR-4184-01 X 13786260 13786260 G A OFD1 Missense_Mutation p.D949N 0.56 deleterious(0.01) possibly_damaging(0.728) TCGA-BR-4184-01 X 138644001 138644001 C T F9 Missense_Mutation p.T386I 0.14 deleterious(0) probably_damaging(0.989) TCGA-BR-4184-01 X 138701772 138701773 - T MCF2 Frame_Shift_Ins p.L321Ifs*6 0.45 TCGA-BR-4184-01 X 138844225 138844225 G A ATP11C Silent p.S848S 0.41 TCGA-BR-4184-01 X 140993326 140993326 G A MAGEC1 Missense_Mutation p.D46N 0.09 deleterious_low_confidence(0.04) possibly_damaging(0.555) TCGA-BR-4184-01 X 1422885 1422885 G A CSF2RA Missense_Mutation p.G373D 0.07 deleterious(0) possibly_damaging(0.719) TCGA-BR-4184-01 X 145109366 145109366 C T MIR891A RNA 0.32 TCGA-BR-4184-01 X 1471219 1471219 C T IL3RA Missense_Mutation p.R146C 0.40 tolerated(0.16) possibly_damaging(0.594) TCGA-BR-4184-01 X 149013852 149013852 C A MAGEA8 Missense_Mutation p.P269H 0.49 deleterious(0.02) possibly_damaging(0.766) TCGA-BR-4184-01 X 149901140 149901140 G A MTMR1 Missense_Mutation p.A332T 0.43 deleterious(0.05) benign(0.035) TCGA-BR-4184-01 X 1505554 1505554 G A SLC25A6 Missense_Mutation p.R280W 0.31 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 X 151123859 151123859 G T GABRE Missense_Mutation p.A373D 0.22 tolerated(0.13) probably_damaging(0.998) TCGA-BR-4184-01 X 151358341 151358341 G A GABRA3 Missense_Mutation p.A335V 0.27 tolerated(0.27) probably_damaging(1) TCGA-BR-4184-01 X 151821085 151821085 C T GABRQ Missense_Mutation p.L414F 0.30 tolerated(0.12) benign(0.269) TCGA-BR-4184-01 X 151998218 151998218 C T CETN2 Silent p.K30K 0.15 TCGA-BR-4184-01 X 152034374 152034374 C T NSDHL Silent p.G185G 0.13 TCGA-BR-4184-01 X 152613249 152613249 G A ZNF275 3'UTR 0.36 TCGA-BR-4184-01 X 153053556 153053556 C T IDH3G Silent p.S127S 0.42 TCGA-BR-4184-01 X 153282484 153282484 C T IRAK1 Missense_Mutation p.R315Q 0.52 deleterious(0) probably_damaging(1) TCGA-BR-4184-01 X 153583217 153583217 C A FLNA Silent p.V1731V 0.35 TCGA-BR-4184-01 X 153697254 153697254 C T PLXNA3 Missense_Mutation p.A1459V 0.37 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 X 154113536 154113536 C T H2AFB1 Missense_Mutation p.A71V 0.44 deleterious(0.03) probably_damaging(0.961) TCGA-BR-4184-01 X 154754277 154754277 A T TMLHE Missense_Mutation p.N66K 0.20 tolerated(0.09) benign(0.099) TCGA-BR-4184-01 X 155003998 155003998 C T SPRY3 Silent p.C155C 0.14 TCGA-BR-4184-01 X 15790676 15790676 G - CA5B Frame_Shift_Del p.A135Pfs*22 0.38 TCGA-BR-4184-01 X 1712430 1712430 G A AKAP17A Silent p.K25K 0.40 TCGA-BR-4184-01 X 17746817 17746817 C A NHS Missense_Mutation p.S1403Y 0.40 deleterious(0.02) possibly_damaging(0.847) TCGA-BR-4184-01 X 18278348 18278348 G A SCML2 Missense_Mutation p.R338C 0.16 deleterious(0.04) possibly_damaging(0.586) TCGA-BR-4184-01 X 18824564 18824564 G A PPEF1 Missense_Mutation p.S432N 0.12 deleterious(0) possibly_damaging(0.887) TCGA-BR-4184-01 X 18927018 18927018 T C PHKA2 Missense_Mutation p.D754G 0.07 tolerated(0.26) benign(0.063) TCGA-BR-4184-01 X 19560086 19560086 G A SH3KBP1 Missense_Mutation p.R617C 0.80 deleterious(0) probably_damaging(0.976) TCGA-BR-4184-01 X 19649997 19649997 G A SH3KBP1 Silent p.V294V 0.12 TCGA-BR-4184-01 X 19705743 19705743 C T SH3KBP1 Intron 0.59 TCGA-BR-4184-01 X 23397938 23397938 C T PTCHD1 Silent p.G194G 0.52 TCGA-BR-4184-01 X 2408097 2408097 C T ZBED1 Missense_Mutation p.A222T 0.29 tolerated_low_confidence(0.59) benign(0.001) TCGA-BR-4184-01 X 24552101 24552101 G A PDK3 Missense_Mutation p.R378H 0.46 deleterious(0) possibly_damaging(0.728) TCGA-BR-4184-01 X 24608151 24608151 C T PCYT1B Missense_Mutation p.E159K 0.22 tolerated(0.53) benign(0.034) TCGA-BR-4184-01 X 24690692 24690692 G A PCYT1B Missense_Mutation p.R20C 0.11 deleterious(0) possibly_damaging(0.462) TCGA-BR-4184-01 X 27766835 27766835 C T DCAF8L2 Missense_Mutation p.S608L 0.27 tolerated(0.36) benign(0.004) TCGA-BR-4184-01 X 27997832 27997832 C T DCAF8L1 Silent p.T540T 0.13 TCGA-BR-4184-01 X 30872570 30872570 C T TAB3 Silent p.T404T 0.10 TCGA-BR-4184-01 X 30877628 30877628 G A TAB3 Silent p.G26G 0.44 TCGA-BR-4184-01 X 31227807 31227808 AA - DMD Frame_Shift_Del p.L3124Efs*7 0.41 TCGA-BR-4184-01 X 3240185 3240185 A - MXRA5 Frame_Shift_Del p.S1181Lfs*68 0.53 TCGA-BR-4184-01 X 37028757 37028757 C T FAM47C Silent p.R758R 0.53 TCGA-BR-4184-01 X 37663265 37663265 G A CYBB Missense_Mutation p.A345T 0.59 deleterious(0) probably_damaging(0.996) TCGA-BR-4184-01 X 38664476 38664476 C T MID1IP1 Missense_Mutation p.L93F 0.64 deleterious(0.02) probably_damaging(0.979) TCGA-BR-4184-01 X 39913265 39913265 A - BCOR Frame_Shift_Del p.L1617* 0.58 TCGA-BR-4184-01 X 39932705 39932705 C T BCOR Missense_Mutation p.G632S 0.43 tolerated(0.07) probably_damaging(0.999) TCGA-BR-4184-01 X 39934127 39934127 T - BCOR Frame_Shift_Del p.S158Vfs*3 0.25 TCGA-BR-4184-01 X 41586274 41586274 A G GPR82 5'UTR 0.63 TCGA-BR-4184-01 X 44703683 44703683 C T DUSP21 Missense_Mutation p.T102M 0.15 deleterious(0.02) probably_damaging(0.992) TCGA-BR-4184-01 X 47500653 47500653 G A ELK1 Missense_Mutation p.A63V 0.17 deleterious(0) probably_damaging(0.998) TCGA-BR-4184-01 X 47926265 47926265 A G ZNF630 Missense_Mutation p.S4P 0.10 tolerated(0.07) benign(0.001) TCGA-BR-4184-01 X 48832466 48832466 C T GRIPAP1 Missense_Mutation p.A748T 0.52 possibly_damaging(0.721) TCGA-BR-4184-01 X 49856842 49856842 C T CLCN5 Missense_Mutation p.A806V 0.14 tolerated(0.2) benign(0.418) TCGA-BR-4184-01 X 50339874 50339874 C T SHROOM4 Missense_Mutation p.V1435M 0.18 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 X 50659440 50659440 G A BMP15 Missense_Mutation p.A338T 0.10 deleterious(0) probably_damaging(0.935) TCGA-BR-4184-01 X 51488078 51488078 C T GSPT2 Silent p.S452S 0.47 TCGA-BR-4184-01 X 53247024 53247024 C T KDM5C Missense_Mutation p.R159H 0.46 deleterious(0.01) benign(0.252) TCGA-BR-4184-01 X 53280263 53280263 G A IQSEC2 Missense_Mutation p.R499W 0.50 tolerated(0.1) probably_damaging(0.972) TCGA-BR-4184-01 X 53569478 53569478 G A HUWE1 Missense_Mutation p.A3801V 0.22 unknown(0) TCGA-BR-4184-01 X 53641546 53641546 G A HUWE1 Missense_Mutation p.A737V 0.39 possibly_damaging(0.815) TCGA-BR-4184-01 X 54014219 54014219 G A PHF8 Missense_Mutation p.A666V 0.42 tolerated(0.25) benign(0.001) TCGA-BR-4184-01 X 54584945 54584945 G A GNL3L Missense_Mutation p.R508H 0.50 tolerated(0.57) benign(0) TCGA-BR-4184-01 X 54781451 54781451 T C ITIH6 Silent p.K1067K 0.17 TCGA-BR-4184-01 X 54949812 54949812 G A TRO Missense_Mutation p.A283T 0.60 tolerated(0.69) unknown(0) TCGA-BR-4184-01 X 55514472 55514472 C T USP51 Missense_Mutation p.A301T 0.49 deleterious(0.03) benign(0.157) TCGA-BR-4184-01 X 63412648 63412648 A - AMER1 Frame_Shift_Del p.F173Lfs*36 0.33 TCGA-BR-4184-01 X 66942787 66942787 C T AR Silent p.R856R 0.51 TCGA-BR-4184-01 X 68382185 68382185 G A PJA1 Silent p.G299G 0.26 TCGA-BR-4184-01 X 69479032 69479032 C T P2RY4 Missense_Mutation p.R148H 0.37 tolerated(0.27) benign(0.015) TCGA-BR-4184-01 X 69615826 69615826 C T KIF4A Missense_Mutation p.R806C 0.39 tolerated(0.1) benign(0.001) TCGA-BR-4184-01 X 69722114 69722115 CT - DLG3 Frame_Shift_Del p.*818K 0.71 TCGA-BR-4184-01 X 70149776 70149776 A C SLC7A3 Silent p.A24A 0.43 TCGA-BR-4184-01 X 70598858 70598858 C T TAF1 Missense_Mutation p.A466V 0.10 tolerated(0.06) probably_damaging(0.974) TCGA-BR-4184-01 X 70603863 70603863 C T TAF1 Missense_Mutation p.R687C 0.17 deleterious(0) probably_damaging(0.999) TCGA-BR-4184-01 X 70779183 70779183 C T OGT Missense_Mutation p.R557C 0.44 deleterious(0) probably_damaging(0.981) TCGA-BR-4184-01 X 71425358 71425358 T C ERCC6L Missense_Mutation p.M1087V 0.59 tolerated(0.64) benign(0) TCGA-BR-4184-01 X 72667389 72667389 C T CDX4 Silent p.D100D 0.50 TCGA-BR-4184-01 X 73062792 73062792 C T XIST RNA 0.41 TCGA-BR-4184-01 X 73066391 73066391 C T XIST RNA 0.49 TCGA-BR-4184-01 X 73068198 73068198 A G XIST RNA 0.30 TCGA-BR-4184-01 X 73068975 73068975 C T XIST RNA 0.49 TCGA-BR-4184-01 X 73072090 73072091 - A XIST RNA 0.41 TCGA-BR-4184-01 X 74273180 74273180 A - ABCB7 3'UTR 0.38 TCGA-BR-4184-01 X 77243895 77243895 C T ATP7A Missense_Mutation p.T93M 0.07 tolerated(0.13) benign(0.181) TCGA-BR-4184-01 X 83724399 83724399 T C HDX Missense_Mutation p.Y111C 0.42 deleterious(0) probably_damaging(0.986) TCGA-BR-4184-01 X 84523321 84523321 G A ZNF711 Missense_Mutation p.R313Q 0.48 tolerated(0.39) possibly_damaging(0.688) TCGA-BR-4184-01 X 91090380 91090380 T - PCDH11X 5'UTR 0.27 TCGA-BR-4184-01 X 92927519 92927519 T C NAP1L3 Missense_Mutation p.D262G 0.51 deleterious_low_confidence(0.04) benign(0) TCGA-BR-4184-01 X 99942125 99942125 C T SYTL4 Missense_Mutation p.V375I 0.41 tolerated(1) benign(0.002) TCGA-BR-4184-01 Y 15409563 15409563 G A UTY Intron 0.44 TCGA-BR-4184-01 Y 16952743 16952743 G A NLGN4Y Silent p.S684S 0.37 TCGA-BR-4184-01 Y 2847736 2847736 G A ZFY Missense_Mutation p.R703H 0.42 deleterious(0.04) benign(0.219) TCGA-BR-4187-01 11 1093349 1093349 C T MUC2 Missense_Mutation p.P1723L 0.10 unknown(0) TCGA-BR-4187-01 11 15994601 15994601 G A SOX6 Silent p.I727I 0.17 TCGA-BR-4187-01 11 95546138 95546138 G C CEP57 Missense_Mutation p.R82P 0.08 deleterious(0) probably_damaging(0.993) TCGA-BR-4187-01 12 108589947 108589947 G A WSCD2 Missense_Mutation p.R113Q 0.09 tolerated(0.15) benign(0.127) TCGA-BR-4187-01 12 53607425 53607425 C T RARG Silent p.G291G 0.07 TCGA-BR-4187-01 12 72023392 72023392 G T ZFC3H1 Missense_Mutation p.H1275N 0.12 deleterious(0.01) benign(0.355) TCGA-BR-4187-01 15 20872194 20872194 C G NBEAP1 RNA 0.30 TCGA-BR-4187-01 15 50540522 50540522 T C HDC Missense_Mutation p.S354G 0.11 tolerated(0.73) probably_damaging(0.988) TCGA-BR-4187-01 16 21726384 21726384 C T OTOA Missense_Mutation p.R467C 0.04 tolerated(0.08) benign(0) TCGA-BR-4187-01 16 28993708 28993708 G A SPNS1 Missense_Mutation p.G333R 0.07 deleterious(0) probably_damaging(1) TCGA-BR-4187-01 16 31122413 31122413 C T BCKDK Missense_Mutation p.R240C 0.17 deleterious(0.02) possibly_damaging(0.735) TCGA-BR-4187-01 16 321028 321028 C T RGS11 Missense_Mutation p.V312M 0.18 tolerated(0.26) benign(0.034) TCGA-BR-4187-01 16 68842723 68842727 TGGAT CA CDH1 In_Frame_Del p.L220_D221delinsP 0.20 TCGA-BR-4187-01 16 9862888 9862888 G A GRIN2A Silent p.N805N 0.08 TCGA-BR-4187-01 1 103352525 103352525 C A COL11A1 Missense_Mutation p.D1566Y 0.08 unknown(0) TCGA-BR-4187-01 1 10394612 10394612 G A KIF1B Missense_Mutation p.V941M 0.07 deleterious(0.03) probably_damaging(0.982) TCGA-BR-4187-01 1 104120221 104120221 G A AMY2B Missense_Mutation p.R404H 0.05 deleterious(0.03) benign(0.059) TCGA-BR-4187-01 1 175046731 175046731 C T TNN Silent p.D59D 0.14 TCGA-BR-4187-01 1 176999973 176999973 G A ASTN1 Silent p.S327S 0.14 TCGA-BR-4187-01 1 207112713 207112714 - A PIGR Frame_Shift_Ins p.V47Cfs*15 0.14 TCGA-BR-4187-01 1 216073486 216073486 G A USH2A Missense_Mutation p.R2509W 0.11 possibly_damaging(0.693) TCGA-BR-4187-01 1 64021086 64021086 A G EFCAB7 Missense_Mutation p.T372A 0.06 deleterious(0) possibly_damaging(0.624) TCGA-BR-4187-01 1 9790667 9790667 C A CLSTN1 Nonsense_Mutation p.E949* 0.08 TCGA-BR-4187-01 21 46057679 46057679 C T KRTAP10-10 Silent p.F115F 0.05 TCGA-BR-4187-01 2 28785965 28785965 C T PLB1 Missense_Mutation p.T402M 0.10 deleterious(0) probably_damaging(1) TCGA-BR-4187-01 3 127340016 127340016 G A MCM2 Missense_Mutation p.R850H 0.11 tolerated(0.09) probably_damaging(0.932) TCGA-BR-4187-01 3 196120448 196120448 A - UBXN7 Frame_Shift_Del p.F111Sfs*15 0.10 TCGA-BR-4187-01 4 8235216 8235216 C T SH3TC1 Silent p.S1086S 0.11 TCGA-BR-4187-01 5 140263466 140263466 G A PCDHA13 Missense_Mutation p.R538H 0.14 deleterious_low_confidence(0.01) benign(0.017) TCGA-BR-4187-01 6 166844008 166844008 G A RPS6KA2 Missense_Mutation p.S513L 0.09 deleterious(0) possibly_damaging(0.863) TCGA-BR-4187-01 6 29079853 29079853 G A OR2J3 Missense_Mutation p.M62I 0.08 deleterious(0) possibly_damaging(0.805) TCGA-BR-4187-01 6 32123534 32123534 C T PPT2 Missense_Mutation p.S142F 0.12 deleterious(0) probably_damaging(0.988) TCGA-BR-4187-01 6 45515134 45515134 T C RUNX2 3'UTR 0.14 TCGA-BR-4187-01 7 135307616 135307616 C T NUP205 Silent p.G1474G 0.09 TCGA-BR-4187-01 7 97766742 97766742 A C LMTK2 Missense_Mutation p.E73D 0.05 tolerated(0.11) probably_damaging(0.948) TCGA-BR-4187-01 8 11189042 11189042 G A SLC35G5 Missense_Mutation p.A143T 0.07 tolerated(0.17) benign(0.023) TCGA-BR-4187-01 9 32630718 32630718 G A TAF1L Silent p.Y1620Y 0.08 TCGA-BR-4187-01 9 37711391 37711391 C T FRMPD1 Missense_Mutation p.S136L 0.05 tolerated(0.24) benign(0.014) TCGA-BR-4187-01 9 66465815 66465815 C T RP11-262H14.1 RNA 0.09 TCGA-BR-4187-01 9 66465820 66465820 T A RP11-262H14.1 RNA 0.10 TCGA-BR-4187-01 X 135084305 135084305 G T SLC9A6 Missense_Mutation p.V278F 0.17 deleterious(0.01) probably_damaging(0.956) TCGA-BR-4188-01 10 123976316 123976316 G A TACC2 Missense_Mutation p.E2507K 0.20 probably_damaging(0.95) TCGA-BR-4188-01 10 124402642 124402642 G A DMBT1 Missense_Mutation p.V2324M 0.15 deleterious(0.03) probably_damaging(0.942) TCGA-BR-4188-01 10 88123850 88123850 G A GRID1 Missense_Mutation p.A28V 0.10 tolerated(0.3) probably_damaging(0.935) TCGA-BR-4188-01 11 31115643 31115643 G A DCDC1 Missense_Mutation p.A691V 0.16 tolerated_low_confidence(0.68) benign(0.022) TCGA-BR-4188-01 11 55579431 55579431 T C OR5L1 Silent p.A163A 0.21 TCGA-BR-4188-01 11 77386245 77386245 G A RSF1 Missense_Mutation p.P1133L 0.18 tolerated(0.15) benign(0.295) TCGA-BR-4188-01 12 113730792 113730792 G A TPCN1 Missense_Mutation p.V795I 0.21 tolerated(0.49) benign(0.004) TCGA-BR-4188-01 12 5021267 5021267 C T KCNA1 Silent p.F241F 0.22 TCGA-BR-4188-01 12 7361645 7361645 G A PEX5 Missense_Mutation p.R495Q 0.29 tolerated(0.18) benign(0.001) TCGA-BR-4188-01 12 94654549 94654549 G A PLXNC1 Missense_Mutation p.R1128H 0.16 deleterious(0) probably_damaging(0.996) TCGA-BR-4188-01 13 102568812 102568812 G A FGF14 Intron 0.08 TCGA-BR-4188-01 13 36241608 36241608 C T NBEA Silent p.S2833S 0.18 TCGA-BR-4188-01 13 77780921 77780921 C T MYCBP2 Silent p.A1114A 0.19 TCGA-BR-4188-01 14 102349871 102349871 A G PPP2R5C Missense_Mutation p.R232G 0.17 deleterious(0) probably_damaging(0.999) TCGA-BR-4188-01 15 23931922 23931922 G C NDN Missense_Mutation p.A148G 0.11 tolerated(0.08) probably_damaging(0.999) TCGA-BR-4188-01 15 35275680 35275680 T C ZNF770 5'UTR 0.21 TCGA-BR-4188-01 15 91491480 91491480 G A UNC45A Silent p.A568A 0.20 TCGA-BR-4188-01 16 19725563 19725563 G A KNOP1 Silent p.S265S 0.26 TCGA-BR-4188-01 16 22926408 22926408 G A HS3ST2 Missense_Mutation p.R210H 0.14 deleterious(0) probably_damaging(1) TCGA-BR-4188-01 16 51174297 51174297 G A SALL1 Silent p.A612A 0.19 TCGA-BR-4188-01 16 68842699 68842699 G A CDH1 Missense_Mutation p.G212E 0.17 deleterious(0) probably_damaging(1) TCGA-BR-4188-01 16 76556042 76556042 T G CNTNAP4 Silent p.V808V 0.17 TCGA-BR-4188-01 16 77918562 77918562 G A VAT1L Missense_Mutation p.A314T 0.33 deleterious(0.03) possibly_damaging(0.73) TCGA-BR-4188-01 17 11651040 11651040 G A DNAH9 Silent p.E2189E 0.19 TCGA-BR-4188-01 17 20805576 20805576 C T RP11-344E13.3 RNA 0.15 TCGA-BR-4188-01 17 30932222 30932222 A G MYO1D Missense_Mutation p.L916P 0.25 deleterious(0) probably_damaging(0.987) TCGA-BR-4188-01 17 39767374 39767374 C T KRT16 Missense_Mutation p.E294K 0.17 deleterious(0.01) probably_damaging(0.985) TCGA-BR-4188-01 17 39767456 39767456 G A KRT16 Silent p.T266T 0.14 TCGA-BR-4188-01 17 45894030 45894030 A T OSBPL7 Missense_Mutation p.L276Q 0.30 deleterious(0) probably_damaging(0.999) TCGA-BR-4188-01 17 4835962 4835962 G T GP1BA Missense_Mutation p.E21D 0.16 tolerated(0.2) possibly_damaging(0.768) TCGA-BR-4188-01 17 61498701 61498701 C G TANC2 Missense_Mutation p.S1786R 0.18 deleterious_low_confidence(0) benign(0.296) TCGA-BR-4188-01 17 63221358 63221358 G A RGS9 Missense_Mutation p.R549H 0.20 tolerated_low_confidence(0.39) benign(0.001) TCGA-BR-4188-01 17 80274701 80274701 G A CD7 Missense_Mutation p.T80M 0.14 deleterious(0) possibly_damaging(0.856) TCGA-BR-4188-01 18 56376637 56376637 A C MALT1 Missense_Mutation p.K226T 0.13 tolerated(0.27) benign(0.027) TCGA-BR-4188-01 18 56376642 56376642 C T MALT1 Nonsense_Mutation p.Q228* 0.16 TCGA-BR-4188-01 19 14139122 14139122 G A RLN3 Missense_Mutation p.G36S 0.17 deleterious(0.04) probably_damaging(0.999) TCGA-BR-4188-01 19 21299790 21299790 G A ZNF714 Missense_Mutation p.C107Y 0.19 deleterious(0.03) probably_damaging(0.997) TCGA-BR-4188-01 19 36221615 36221615 C T KMT2B Missense_Mutation p.R1762C 0.19 probably_damaging(0.993) TCGA-BR-4188-01 19 43262204 43262204 C T PSG8 Missense_Mutation p.R220Q 0.19 tolerated(0.95) benign(0.023) TCGA-BR-4188-01 19 57743416 57743416 C T AURKC Silent p.V40V 0.22 TCGA-BR-4188-01 1 152276112 152276112 C T FLG Silent p.A3750A 0.23 TCGA-BR-4188-01 1 152325465 152325465 G A FLG2 Silent p.Y1599Y 0.19 TCGA-BR-4188-01 1 178426964 178426964 G A RASAL2 Missense_Mutation p.R846Q 0.19 deleterious(0.01) probably_damaging(0.996) TCGA-BR-4188-01 1 186092180 186092180 C T HMCN1 Silent p.D4109D 0.19 TCGA-BR-4188-01 1 236205258 236205258 G T NID1 Missense_Mutation p.Q363K 0.22 tolerated(0.1) benign(0.009) TCGA-BR-4188-01 1 27106497 27106498 - C ARID1A Frame_Shift_Ins p.Q2037Pfs*62 0.31 TCGA-BR-4188-01 20 30521649 30521649 C T TTLL9 Silent p.Y265Y 0.17 TCGA-BR-4188-01 21 32492758 32492758 G A TIAM1 Silent p.S1568S 0.14 TCGA-BR-4188-01 21 44151921 44151921 G T PDE9A Missense_Mutation p.A102S 0.20 tolerated(0.4) benign(0.001) TCGA-BR-4188-01 21 45390580 45390580 G A AGPAT3 Missense_Mutation p.R186H 0.26 deleterious(0.01) possibly_damaging(0.667) TCGA-BR-4188-01 21 47549137 47549137 C T COL6A2 Intron 0.16 TCGA-BR-4188-01 22 19349416 19349416 C T HIRA Missense_Mutation p.R605Q 0.17 tolerated(0.13) benign(0.079) TCGA-BR-4188-01 22 31536082 31536082 A G PLA2G3 Missense_Mutation p.C87R 0.16 deleterious(0) probably_damaging(0.999) TCGA-BR-4188-01 2 173679118 173679118 C T RAPGEF4 Missense_Mutation p.R137C 0.31 deleterious(0) probably_damaging(0.998) TCGA-BR-4188-01 2 179429737 179429737 G A TTN Missense_Mutation p.T27041M 0.26 TCGA-BR-4188-01 2 197878392 197878392 C T HNRNPA3P15 5'Flank 0.15 TCGA-BR-4188-01 2 209047703 209047703 C T C2orf80 Silent p.L64L 0.09 TCGA-BR-4188-01 2 33572560 33572560 G A LTBP1 Missense_Mutation p.R1328H 0.13 tolerated(0.14) probably_damaging(0.962) TCGA-BR-4188-01 2 48915521 48915521 A G LHCGR Missense_Mutation p.I472T 0.24 deleterious(0) benign(0.102) TCGA-BR-4188-01 2 80529646 80529646 C A LRRTM1 Missense_Mutation p.M433I 0.26 deleterious(0.02) possibly_damaging(0.838) TCGA-BR-4188-01 2 80835315 80835315 G T CTNNA2 Missense_Mutation p.D768Y 0.14 deleterious(0) probably_damaging(0.978) TCGA-BR-4188-01 3 14731512 14731512 G A C3orf20 Missense_Mutation p.A212T 0.16 tolerated(0.71) benign(0.002) TCGA-BR-4188-01 3 183368716 183368716 C T KLHL24 Missense_Mutation p.A191V 0.17 tolerated(0.41) benign(0.044) TCGA-BR-4188-01 3 184005662 184005662 C T ECE2 Missense_Mutation p.T552M 0.15 deleterious(0) probably_damaging(1) TCGA-BR-4188-01 3 195974306 195974306 G A PCYT1A Missense_Mutation p.R140C 0.25 deleterious(0.01) probably_damaging(0.99) TCGA-BR-4188-01 3 41277254 41277254 G A CTNNB1 Missense_Mutation p.G575R 0.14 deleterious(0) probably_damaging(0.994) TCGA-BR-4188-01 3 47049627 47049627 G A NBEAL2 Missense_Mutation p.S2557N 0.12 deleterious(0.02) possibly_damaging(0.648) TCGA-BR-4188-01 3 49412898 49412898 T C RHOA Missense_Mutation p.Y42C 0.44 deleterious(0.01) benign(0.327) TCGA-BR-4188-01 3 66457882 66457882 G A LRIG1 Silent p.D323D 0.17 TCGA-BR-4188-01 4 104640553 104640553 C T TACR3 Missense_Mutation p.V94M 0.24 tolerated(0.26) benign(0.005) TCGA-BR-4188-01 4 134072680 134072680 G A PCDH10 Missense_Mutation p.R462H 0.22 tolerated(0.05) possibly_damaging(0.72) TCGA-BR-4188-01 4 5642365 5642365 C T EVC2 Missense_Mutation p.R449Q 0.19 deleterious(0.01) probably_damaging(0.936) TCGA-BR-4188-01 4 73164020 73164020 G C ADAMTS3 Missense_Mutation p.S855C 0.13 deleterious(0) probably_damaging(0.996) TCGA-BR-4188-01 5 118469231 118469231 G A DMXL1 Missense_Mutation p.D538N 0.20 deleterious(0) probably_damaging(0.91) TCGA-BR-4188-01 5 132535203 132535203 C T FSTL4 Missense_Mutation p.A705T 0.31 tolerated(0.14) benign(0.005) TCGA-BR-4188-01 5 13776589 13776589 A G DNAH5 Missense_Mutation p.I3111T 0.17 benign(0.415) TCGA-BR-4188-01 5 140182827 140182827 C T PCDHA3 Missense_Mutation p.A682V 0.20 tolerated_low_confidence(0.31) benign(0.028) TCGA-BR-4188-01 5 140307641 140307641 G A PCDHAC1 Silent p.T388T 0.18 TCGA-BR-4188-01 5 140564164 140564164 C G PCDHB16 Missense_Mutation p.A677G 0.17 deleterious_low_confidence(0.01) benign(0.345) TCGA-BR-4188-01 5 150922506 150922506 G A FAT2 Missense_Mutation p.R2728W 0.23 possibly_damaging(0.773) TCGA-BR-4188-01 5 150928895 150928895 G A FAT2 Missense_Mutation p.R1584W 0.24 benign(0.014) TCGA-BR-4188-01 6 10876693 10876693 G A GCM2 Silent p.N147N 0.12 TCGA-BR-4188-01 6 128134866 128134866 A G THEMIS Missense_Mutation p.I307T 0.17 deleterious(0) probably_damaging(0.973) TCGA-BR-4188-01 6 146755675 146755675 G A GRM1 Missense_Mutation p.V1110M 0.18 tolerated_low_confidence(0.81) benign(0.011) TCGA-BR-4188-01 6 152265479 152265479 C T ESR1 Missense_Mutation p.T311M 0.14 deleterious(0.02) benign(0.045) TCGA-BR-4188-01 7 100959744 100959744 G A RABL5 Missense_Mutation p.R96W 0.12 deleterious(0.02) benign(0.001) TCGA-BR-4188-01 7 51085161 51085161 T G COBL 3'UTR 0.21 TCGA-BR-4188-01 8 110986297 110986297 C T KCNV1 Silent p.S107S 0.31 TCGA-BR-4188-01 8 113564865 113564865 C T CSMD3 Missense_Mutation p.R1440H 0.17 tolerated(1) probably_damaging(0.915) TCGA-BR-4188-01 8 123965143 123965143 G T ZHX2 Missense_Mutation p.D465Y 0.37 deleterious(0) probably_damaging(0.983) TCGA-BR-4188-01 8 24811294 24811294 G A CTD-2168K21.2 5'Flank 0.21 TCGA-BR-4188-01 9 103279048 103279048 T C TMEFF1 Silent p.N185N 0.12 TCGA-BR-4188-01 9 117849383 117849383 G A TNC Silent p.D209D 0.15 TCGA-BR-4188-01 9 130206310 130206310 T C ZNF79 Missense_Mutation p.W111R 0.19 tolerated(0.05) benign(0.001) TCGA-BR-4188-01 X 112035098 112035098 G A AMOT Nonsense_Mutation p.R630* 0.11 TCGA-BR-4188-01 X 122755146 122755146 C G THOC2 Missense_Mutation p.E1360Q 0.14 tolerated(0.11) benign(0.265) TCGA-BR-4188-01 X 125299117 125299117 T C DCAF12L2 Missense_Mutation p.K264R 0.23 tolerated(0.11) benign(0.026) TCGA-BR-4188-01 X 136113194 136113194 C T GPR101 Missense_Mutation p.V214M 0.17 tolerated(0.53) benign(0.182) TCGA-BR-4188-01 X 153043007 153043007 G A PLXNB3 Missense_Mutation p.D1732N 0.28 tolerated(0.26) probably_damaging(0.991) TCGA-BR-4188-01 X 153297980 153297980 G C MECP2 Missense_Mutation p.Q31E 0.20 tolerated(0.12) benign(0.42) TCGA-BR-4188-01 X 153996856 153996856 T A DKC1 Intron 0.13 TCGA-BR-4188-01 X 49958235 49958235 C T AKAP4 Missense_Mutation p.E377K 0.20 deleterious(0.02) possibly_damaging(0.747) TCGA-BR-4188-01 X 54956240 54956240 G T TRO Missense_Mutation p.G1028V 0.11 deleterious(0.01) probably_damaging(0.978) TCGA-BR-4188-01 X 73064258 73064258 G A XIST RNA 0.12 TCGA-BR-4191-01 10 115534093 115534093 G A PLEKHS1 Splice_Site p.X254_splice 0.17 TCGA-BR-4191-01 10 122668308 122668308 G A WDR11 3'UTR 0.35 TCGA-BR-4191-01 10 22617625 22617625 C G BMI1 Missense_Mutation p.Q190E 0.25 tolerated(0.26) benign(0.008) TCGA-BR-4191-01 10 70645583 70645583 C A STOX1 Silent p.G677G 0.19 TCGA-BR-4191-01 10 71876517 71876517 G A AIFM2 Silent p.S210S 0.16 TCGA-BR-4191-01 10 75549954 75549954 C T ZSWIM8 Missense_Mutation p.S282L 0.21 deleterious(0.01) probably_damaging(0.975) TCGA-BR-4191-01 10 7608346 7608346 A G ITIH5 Missense_Mutation p.I725T 0.31 deleterious(0.01) benign(0.444) TCGA-BR-4191-01 10 87484277 87484277 C A GRID1 Missense_Mutation p.A564S 0.27 tolerated(0.9) probably_damaging(0.999) TCGA-BR-4191-01 10 91099742 91099742 C T IFIT3 Missense_Mutation p.R444C 0.37 tolerated(0.28) benign(0.005) TCGA-BR-4191-01 10 98741419 98741419 G T C10orf12 Missense_Mutation p.R91I 0.38 deleterious(0) probably_damaging(0.973) TCGA-BR-4191-01 10 99140565 99140565 C G RRP12 Silent p.V508V 0.68 TCGA-BR-4191-01 11 109295003 109295003 C A C11orf87 3'UTR 0.40 TCGA-BR-4191-01 11 109295004 109295004 C A C11orf87 3'UTR 0.40 TCGA-BR-4191-01 11 128709348 128709348 G A KCNJ1 Missense_Mutation p.A283V 0.38 tolerated(0.62) benign(0.015) TCGA-BR-4191-01 11 16007941 16007941 G C SOX6 Missense_Mutation p.N644K 0.25 deleterious(0) possibly_damaging(0.711) TCGA-BR-4191-01 11 26587411 26587411 G T MUC15 Missense_Mutation p.P26T 0.31 tolerated_low_confidence(1) benign(0.012) TCGA-BR-4191-01 11 33053076 33053076 G C DEPDC7 Missense_Mutation p.S312T 0.15 tolerated(0.14) benign(0.001) TCGA-BR-4191-01 11 5323107 5323107 G A OR51B4 Missense_Mutation p.R24W 0.31 tolerated(1) benign(0) TCGA-BR-4191-01 11 66460149 66460149 G A SPTBN2 Missense_Mutation p.A1683V 0.33 tolerated(0.19) probably_damaging(0.997) TCGA-BR-4191-01 11 6816879 6816879 G C OR6A2 Missense_Mutation p.P21A 0.26 tolerated(0.8) benign(0.001) TCGA-BR-4191-01 11 8008836 8008836 T C EIF3F 5'UTR 0.33 TCGA-BR-4191-01 12 108004005 108004005 C T BTBD11 Missense_Mutation p.A561V 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-BR-4191-01 12 10954694 10954694 C A TAS2R7 Missense_Mutation p.C159F 0.30 tolerated(0.7) benign(0.091) TCGA-BR-4191-01 12 123060182 123060182 G T KNTC1 Missense_Mutation p.M825I 0.54 deleterious(0.01) possibly_damaging(0.838) TCGA-BR-4191-01 12 124862804 124862804 C G NCOR2 Missense_Mutation p.E716Q 0.18 unknown(0) TCGA-BR-4191-01 12 14804400 14804400 C A GUCY2C Missense_Mutation p.V551L 0.20 deleterious(0.03) probably_damaging(0.998) TCGA-BR-4191-01 12 21036480 21036485 CATAAA - SLCO1B3 In_Frame_Del p.I543_N544del 0.23 TCGA-BR-4191-01 12 26809422 26809428 TGGTTTA - ITPR2 Frame_Shift_Del p.I749Rfs*8 0.43 TCGA-BR-4191-01 12 45567963 45567963 G A PLEKHA8P1 RNA 0.26 TCGA-BR-4191-01 12 53040566 53040566 T A KRT2 Missense_Mutation p.E476V 0.20 deleterious(0) probably_damaging(0.999) TCGA-BR-4191-01 12 53225213 53225213 G T KRT79 Missense_Mutation p.D225E 0.22 tolerated(0.06) benign(0.062) TCGA-BR-4191-01 12 54108990 54108991 AG - CALCOCO1 Frame_Shift_Del p.S460* 0.29 TCGA-BR-4191-01 12 59279648 59279648 T C LRIG3 Silent p.K403K 0.22 TCGA-BR-4191-01 12 69233639 69233639 C G MDM2 3'UTR 0.10 TCGA-BR-4191-01 12 70091576 70091576 C T BEST3 Translation_Start_Site p.M1? 0.26 deleterious(0) probably_damaging(0.994) TCGA-BR-4191-01 12 78582112 78582112 C T NAV3 Missense_Mutation p.R1937C 0.13 deleterious(0) probably_damaging(0.924) TCGA-BR-4191-01 12 9227252 9227252 C A A2M Missense_Mutation p.Q1220H 0.28 deleterious(0.04) benign(0.053) TCGA-BR-4191-01 12 922912 922912 A T WNK1 Missense_Mutation p.E288D 0.17 deleterious(0) unknown(0) TCGA-BR-4191-01 12 989017 989017 G T WNK1 Silent p.A884A 0.26 TCGA-BR-4191-01 13 107147295 107147295 G A EFNB2 Missense_Mutation p.P183S 0.18 deleterious(0.01) possibly_damaging(0.627) TCGA-BR-4191-01 13 114077206 114077206 G A ADPRHL1 Silent p.D332D 0.18 TCGA-BR-4191-01 13 27847365 27847365 C T RASL11A Missense_Mutation p.R155W 0.26 deleterious(0) probably_damaging(1) TCGA-BR-4191-01 13 31898019 31898019 C G B3GALTL Missense_Mutation p.P439R 0.48 deleterious(0.03) possibly_damaging(0.745) TCGA-BR-4191-01 13 43986166 43986166 C G ENOX1 Missense_Mutation p.A32P 0.32 tolerated_low_confidence(0.07) benign(0.046) TCGA-BR-4191-01 13 44443470 44443470 C T CCDC122 Missense_Mutation p.E15K 0.16 tolerated_low_confidence(0.42) benign(0.007) TCGA-BR-4191-01 13 52853998 52853998 G T RP11-248G5.8 RNA 0.18 TCGA-BR-4191-01 13 73547774 73547774 A C PIBF1 Missense_Mutation p.Q670H 0.22 deleterious(0.01) probably_damaging(0.994) TCGA-BR-4191-01 13 78492668 78492668 G A EDNRB Missense_Mutation p.A104V 0.33 deleterious_low_confidence(0.01) probably_damaging(0.926) TCGA-BR-4191-01 14 105859631 105859631 G C PACS2 Missense_Mutation p.R852P 0.46 deleterious(0.02) probably_damaging(0.999) TCGA-BR-4191-01 14 20295867 20295867 C A OR4N2 Missense_Mutation p.S87Y 0.28 tolerated(0.11) benign(0.013) TCGA-BR-4191-01 14 24911974 24911974 A T SDR39U1 Translation_Start_Site p.M1? 0.29 deleterious(0) probably_damaging(0.983) TCGA-BR-4191-01 14 25078787 25078787 A C GZMH Silent p.L11L 0.29 TCGA-BR-4191-01 14 26917367 26917367 C A NOVA1 Missense_Mutation p.G441V 0.24 deleterious(0) probably_damaging(1) TCGA-BR-4191-01 14 60069806 60069806 A C RTN1 Silent p.T755T 0.30 TCGA-BR-4191-01 14 73959764 73959764 A G HEATR4 Intron 0.33 TCGA-BR-4191-01 14 74537899 74537914 TTCATGCTGTCCATGG ATGGATGATGTTTA ALDH6A1 Frame_Shift_Del p.H239Kfs*59 0.27 TCGA-BR-4191-01 14 91927850 91927850 G C SMEK1 Missense_Mutation p.L743V 0.22 tolerated(0.3) benign(0.029) TCGA-BR-4191-01 14 94756557 94756557 T A SERPINA10 Missense_Mutation p.K125M 0.19 tolerated(0.12) benign(0.015) TCGA-BR-4191-01 15 102359303 102359303 T C OR4F15 Missense_Mutation p.L305P 0.41 deleterious_low_confidence(0) possibly_damaging(0.806) TCGA-BR-4191-01 15 25924998 25924998 G A ATP10A Silent p.L1330L 0.20 TCGA-BR-4191-01 15 38808415 38808415 A T RASGRP1 Missense_Mutation p.S220T 0.25 deleterious(0.01) possibly_damaging(0.889) TCGA-BR-4191-01 15 48808532 48808532 G A FBN1 Missense_Mutation p.P392L 0.32 benign(0.006) TCGA-BR-4191-01 15 51772201 51772201 G C DMXL2 Missense_Mutation p.L2234V 0.07 deleterious(0) probably_damaging(0.999) TCGA-BR-4191-01 15 51790812 51790812 A T DMXL2 Missense_Mutation p.L1537M 0.18 deleterious(0) probably_damaging(1) TCGA-BR-4191-01 15 56388648 56388648 C T RFX7 Silent p.R426R 0.27 TCGA-BR-4191-01 15 62352574 62352574 G C VPS13C 5'UTR 0.30 TCGA-BR-4191-01 15 69080154 69080154 G A ANP32A Silent p.G53G 0.21 TCGA-BR-4191-01 15 75091016 75091016 C T CSK Nonsense_Mutation p.Q26* 0.35 TCGA-BR-4191-01 15 99670184 99670184 A G SYNM Missense_Mutation p.E539G 0.43 deleterious(0.03) probably_damaging(0.999) TCGA-BR-4191-01 16 30747914 30747914 A G SRCAP Missense_Mutation p.E2326G 0.17 benign(0.441) TCGA-BR-4191-01 16 53272298 53272298 A G CHD9 Missense_Mutation p.I893V 0.25 possibly_damaging(0.561) TCGA-BR-4191-01 16 67477017 67477017 G C ATP6V0D1 Silent p.R182R 0.25 TCGA-BR-4191-01 16 89187233 89187233 G A ACSF3 Missense_Mutation p.G384E 0.29 deleterious(0.04) possibly_damaging(0.517) TCGA-BR-4191-01 16 90103775 90103775 G A GAS8 Missense_Mutation p.A298T 0.38 tolerated(0.27) benign(0.004) TCGA-BR-4191-01 17 16466545 16466545 T C ZNF287 Silent p.G210G 0.30 TCGA-BR-4191-01 17 16703296 16703296 C A CCDC144A 3'UTR 0.10 TCGA-BR-4191-01 17 29631156 29631156 G T EVI2B 3'UTR 0.36 TCGA-BR-4191-01 17 32646480 32646480 C A CCL8 5'UTR 0.54 TCGA-BR-4191-01 17 35830563 35830563 A G TADA2A Missense_Mutation p.M319V 0.21 tolerated(0.3) benign(0.004) TCGA-BR-4191-01 17 39505636 39505636 G A KRT33A Silent p.I131I 0.25 TCGA-BR-4191-01 17 39538224 39538224 G A KRT34 Missense_Mutation p.S134F 0.20 tolerated(0.09) benign(0.392) TCGA-BR-4191-01 17 39579089 39579089 C T KRT37 Missense_Mutation p.E225K 0.27 deleterious(0) probably_damaging(0.997) TCGA-BR-4191-01 17 40673245 40673245 C T ATP6V0A1 3'UTR 0.24 TCGA-BR-4191-01 17 43314722 43314722 C A FMNL1 Silent p.P266P 0.26 TCGA-BR-4191-01 17 46128617 46128617 C G NFE2L1 Missense_Mutation p.P46R 0.26 deleterious(0) possibly_damaging(0.747) TCGA-BR-4191-01 17 46629484 46629484 C A HOXB3 Missense_Mutation p.G118V 0.22 tolerated(0.07) benign(0.017) TCGA-BR-4191-01 17 47219490 47219490 G C B4GALNT2 Silent p.A163A 0.20 TCGA-BR-4191-01 17 47295217 47295217 G A ABI3 Silent p.T134T 0.20 TCGA-BR-4191-01 17 56082589 56082589 A G RP11-159D12.5 5'UTR 0.38 TCGA-BR-4191-01 17 76501424 76501424 T C DNAH17 Missense_Mutation p.K1632R 0.16 benign(0.066) TCGA-BR-4191-01 17 7674725 7674725 G A DNAH2 Nonsense_Mutation p.W1480* 0.29 TCGA-BR-4191-01 17 77921612 77921612 G A TBC1D16 Silent p.Y520Y 0.19 TCGA-BR-4191-01 18 10696150 10696150 C T PIEZO2 Missense_Mutation p.G2258E 0.18 deleterious(0) possibly_damaging(0.899) TCGA-BR-4191-01 18 13040842 13040842 A G CEP192 Missense_Mutation p.Y608C 0.27 deleterious(0.01) possibly_damaging(0.77) TCGA-BR-4191-01 18 28934840 28934840 T G DSG1 Missense_Mutation p.V894G 0.20 deleterious(0) probably_damaging(0.999) TCGA-BR-4191-01 18 28989416 28989416 G T DSG4 Missense_Mutation p.L645F 0.23 deleterious(0) possibly_damaging(0.9) TCGA-BR-4191-01 18 29340618 29340618 C T SLC25A52 Missense_Mutation p.D13N 0.15 deleterious_low_confidence(0.02) possibly_damaging(0.794) TCGA-BR-4191-01 18 3134758 3134758 C T MYOM1 Silent p.S758S 0.27 TCGA-BR-4191-01 18 346782 346782 G A COLEC12 Silent p.N280N 0.16 TCGA-BR-4191-01 18 3879883 3879883 G A DLGAP1 Silent p.S62S 0.21 TCGA-BR-4191-01 18 59928806 59928806 G C KIAA1468 Missense_Mutation p.L755F 0.35 deleterious(0.01) probably_damaging(0.984) TCGA-BR-4191-01 18 6898606 6898606 G T ARHGAP28 Intron 0.25 TCGA-BR-4191-01 19 10449619 10449619 G A ICAM3 Nonsense_Mutation p.Q28* 0.25 TCGA-BR-4191-01 19 12576446 12576464 GTAAAAGTTTTCTTGTTTG - ZNF709 Frame_Shift_Del p.P91Lfs*3 0.33 TCGA-BR-4191-01 19 14939064 14939064 T G OR7A5 Intron 0.27 TCGA-BR-4191-01 19 18119572 18119572 C T ARRDC2 Silent p.S109S 0.41 TCGA-BR-4191-01 19 19162555 19162555 G T ARMC6 Missense_Mutation p.G135V 0.15 deleterious(0) possibly_damaging(0.873) TCGA-BR-4191-01 19 19162556 19162556 G T ARMC6 Silent p.G135G 0.15 TCGA-BR-4191-01 19 19217190 19217190 G A SLC25A42 Missense_Mutation p.E165K 0.28 tolerated(0.29) probably_damaging(0.951) TCGA-BR-4191-01 19 32949027 32949029 GAT - DPY19L3 In_Frame_Del p.D371del 0.36 TCGA-BR-4191-01 19 4292572 4292572 C T TMIGD2 3'UTR 0.29 TCGA-BR-4191-01 19 48533806 48533806 G C CABP5 3'UTR 0.32 TCGA-BR-4191-01 19 48807339 48807339 G T CCDC114 Missense_Mutation p.Q205K 0.18 tolerated(0.06) possibly_damaging(0.58) TCGA-BR-4191-01 19 55543747 55543747 A T GP6 Missense_Mutation p.S29T 0.43 tolerated_low_confidence(0.35) benign(0.046) TCGA-BR-4191-01 19 55855158 55855158 C A SUV420H2 Missense_Mutation p.T166N 0.40 deleterious(0.02) probably_damaging(0.92) TCGA-BR-4191-01 19 8953560 8953560 G T MBD3L1 Missense_Mutation p.R69M 0.28 tolerated(0.06) benign(0.112) TCGA-BR-4191-01 19 9084075 9084075 T G MUC16 Silent p.T2580T 0.29 TCGA-BR-4191-01 1 142804335 142804335 T G RP11-423O2.5 RNA 0.31 TCGA-BR-4191-01 1 145606349 145606349 T G POLR3C Silent p.R202R 0.25 TCGA-BR-4191-01 1 147095649 147095649 G A BCL9 Missense_Mutation p.G1057D 0.18 deleterious(0.04) possibly_damaging(0.543) TCGA-BR-4191-01 1 151641106 151641106 C T SNX27 Missense_Mutation p.H382Y 0.20 tolerated(1) possibly_damaging(0.572) TCGA-BR-4191-01 1 152081195 152081195 C T TCHH Missense_Mutation p.D1500N 0.24 unknown(0) TCGA-BR-4191-01 1 152280083 152280083 C T FLG Missense_Mutation p.A2427T 0.27 benign(0.099) TCGA-BR-4191-01 1 159284018 159284018 T G OR10J3 Missense_Mutation p.Q144H 0.35 tolerated(0.1) benign(0.02) TCGA-BR-4191-01 1 185277943 185277943 G T IVNS1ABP Silent p.R116R 0.29 TCGA-BR-4191-01 1 203317347 203317347 C T FMOD Missense_Mutation p.A18T 0.22 tolerated(0.25) benign(0.062) TCGA-BR-4191-01 1 24201571 24201571 G A CNR2 Silent p.C179C 0.19 TCGA-BR-4191-01 1 38003393 38003393 C G SNIP1 Missense_Mutation p.D383H 0.20 deleterious_low_confidence(0.01) benign(0.188) TCGA-BR-4191-01 1 39749838 39749838 A C MACF1 Missense_Mutation p.Q344P 0.15 possibly_damaging(0.891) TCGA-BR-4191-01 1 87190089 87190089 G C SH3GLB1 Splice_Site p.X190_splice 0.25 TCGA-BR-4191-01 20 23667771 23667771 G T CST4 Missense_Mutation p.P99H 0.22 deleterious(0) possibly_damaging(0.808) TCGA-BR-4191-01 20 35075294 35075294 C T DLGAP4 Silent p.S534S 0.14 TCGA-BR-4191-01 20 42162956 42162956 G C L3MBTL1 Missense_Mutation p.K522N 0.24 deleterious(0) probably_damaging(0.998) TCGA-BR-4191-01 20 42973984 42973984 C T R3HDML Missense_Mutation p.R199W 0.11 deleterious(0.02) benign(0.035) TCGA-BR-4191-01 20 43139927 43139927 T C SERINC3 Intron 0.16 TCGA-BR-4191-01 20 43926977 43926977 C T MATN4 Missense_Mutation p.R420H 0.23 possibly_damaging(0.799) TCGA-BR-4191-01 20 45003240 45003240 G A ELMO2 Missense_Mutation p.P369S 0.14 deleterious(0) possibly_damaging(0.859) TCGA-BR-4191-01 20 50701719 50701719 C A ZFP64 Nonsense_Mutation p.E439* 0.10 TCGA-BR-4191-01 20 50701720 50701720 C A ZFP64 Silent p.G438G 0.09 TCGA-BR-4191-01 20 60909066 60909066 G C LAMA5 Silent p.T923T 0.27 TCGA-BR-4191-01 22 24323218 24323218 G C GSTT2 Missense_Mutation p.L64F 0.21 deleterious(0.01) probably_damaging(0.985) TCGA-BR-4191-01 22 30975222 30975222 C G PES1 Missense_Mutation p.G475R 0.48 tolerated(0.45) benign(0.016) TCGA-BR-4191-01 2 100906807 100906807 C T LONRF2 Silent p.A611A 0.26 TCGA-BR-4191-01 2 162738866 162738866 G C SLC4A10 Splice_Site p.X369_splice 0.18 TCGA-BR-4191-01 2 1691444 1691444 C T PXDN Missense_Mutation p.D126N 0.42 deleterious(0.04) benign(0.37) TCGA-BR-4191-01 2 170038058 170038058 A T LRP2 Missense_Mutation p.S3357T 0.20 benign(0.074) TCGA-BR-4191-01 2 171264299 171264299 A G MYO3B Silent p.R865R 0.19 TCGA-BR-4191-01 2 175437055 175437055 C A WIPF1 Missense_Mutation p.G160C 0.43 deleterious(0.01) probably_damaging(1) TCGA-BR-4191-01 2 186671020 186671020 C T FSIP2 Nonsense_Mutation p.Q5752* 0.15 TCGA-BR-4191-01 2 196756511 196756511 G T DNAH7 Missense_Mutation p.N1638K 0.28 tolerated(0.29) possibly_damaging(0.573) TCGA-BR-4191-01 2 217285023 217285023 G A SMARCAL1 Missense_Mutation p.M288I 0.14 deleterious(0.04) possibly_damaging(0.515) TCGA-BR-4191-01 2 219231774 219231774 C T C2orf62 Silent p.G261G 0.34 TCGA-BR-4191-01 2 230282862 230282862 A T DNER Missense_Mutation p.V524D 0.19 deleterious(0) benign(0.043) TCGA-BR-4191-01 2 242814523 242814523 C - CXXC11 Frame_Shift_Del p.G274Afs*209 0.27 TCGA-BR-4191-01 2 27456582 27456582 A G CAD Missense_Mutation p.Y1102C 0.35 deleterious(0) probably_damaging(0.967) TCGA-BR-4191-01 2 28718990 28718990 G A PLB1 Silent p.L3L 0.18 TCGA-BR-4191-01 2 71191631 71191631 G A ATP6V1B1 Missense_Mutation p.G403S 0.22 deleterious(0.02) benign(0.086) TCGA-BR-4191-01 2 73453064 73453064 C T SMYD5 Missense_Mutation p.T416I 0.11 deleterious_low_confidence(0) unknown(0) TCGA-BR-4191-01 2 8891763 8891763 T A KIDINS220 Missense_Mutation p.N1008I 0.25 tolerated(0.06) probably_damaging(0.997) TCGA-BR-4191-01 2 89266224 89266224 G A IGKV1-6 Missense_Mutation p.L12F 0.27 tolerated(0.18) benign(0.316) TCGA-BR-4191-01 2 98428986 98428986 G C TMEM131 Missense_Mutation p.D587E 0.22 tolerated(0.27) benign(0.088) TCGA-BR-4191-01 3 112732835 112732835 G T C3orf17 Silent p.G102G 0.23 TCGA-BR-4191-01 3 119501683 119501683 G A NR1I2 Missense_Mutation p.E27K 0.21 tolerated_low_confidence(0.27) benign(0.001) TCGA-BR-4191-01 3 134873004 134873004 C G EPHB1 Silent p.T436T 0.05 TCGA-BR-4191-01 3 137483819 137483819 C T SOX14 Missense_Mutation p.R65C 0.17 deleterious(0) probably_damaging(1) TCGA-BR-4191-01 3 14712448 14712448 C G CCDC174 Missense_Mutation p.A384G 0.14 tolerated(0.05) possibly_damaging(0.739) TCGA-BR-4191-01 3 168833682 168833682 C G MECOM Missense_Mutation p.D537H 0.12 deleterious(0) probably_damaging(1) TCGA-BR-4191-01 3 169492270 169492270 C G MYNN Missense_Mutation p.L63V 0.28 deleterious(0) probably_damaging(0.999) TCGA-BR-4191-01 3 180321029 180321029 C G TTC14 Missense_Mutation p.S135C 0.23 deleterious(0.02) benign(0.222) TCGA-BR-4191-01 3 180321108 180321108 C T TTC14 Silent p.I161I 0.17 TCGA-BR-4191-01 3 180322068 180322068 C G TTC14 Nonsense_Mutation p.S181* 0.22 TCGA-BR-4191-01 3 180397081 180397081 G A CCDC39 Nonsense_Mutation p.Q30* 0.13 TCGA-BR-4191-01 3 183884725 183884725 C A DVL3 Missense_Mutation p.T387N 0.14 tolerated(0.24) benign(0.001) TCGA-BR-4191-01 3 183884726 183884726 C G DVL3 Silent p.T387T 0.14 TCGA-BR-4191-01 3 183898981 183898981 A G AP2M1 Missense_Mutation p.Q225R 0.16 tolerated(0.32) benign(0.004) TCGA-BR-4191-01 3 183976353 183976353 T C ECE2 Intron 0.14 TCGA-BR-4191-01 3 192053245 192053245 T G FGF12 Missense_Mutation p.N107H 0.22 deleterious(0.04) probably_damaging(0.999) TCGA-BR-4191-01 3 30729923 30729923 C A TGFBR2 Missense_Mutation p.P507T 0.25 deleterious(0) probably_damaging(0.981) TCGA-BR-4191-01 3 39186708 39186708 C A CSRNP1 Missense_Mutation p.G82V 0.23 deleterious(0.01) possibly_damaging(0.597) TCGA-BR-4191-01 3 42445586 42445586 A C LYZL4 Missense_Mutation p.I108S 0.20 deleterious(0) probably_damaging(0.999) TCGA-BR-4191-01 3 432428 432428 A C CHL1 Missense_Mutation p.S839R 0.58 deleterious(0) probably_damaging(1) TCGA-BR-4191-01 3 47098523 47098523 C G SETD2 Missense_Mutation p.D2251H 0.20 deleterious(0) possibly_damaging(0.907) TCGA-BR-4191-01 3 4810221 4810221 G A ITPR1 Missense_Mutation p.E1903K 0.23 tolerated(0.19) benign(0.285) TCGA-BR-4191-01 3 49227417 49227434 CTGGTCTAGTCACCCCCG - C3orf84 Intron 0.21 TCGA-BR-4191-01 3 49842367 49842367 A T FAM212A Missense_Mutation p.M271L 0.28 tolerated(0.18) probably_damaging(0.909) TCGA-BR-4191-01 3 50971444 50971444 C A DOCK3 Missense_Mutation p.S84Y 0.18 deleterious(0) benign(0.326) TCGA-BR-4191-01 3 52233254 52233254 G A ALAS1 5'UTR 0.41 TCGA-BR-4191-01 3 52240613 52240613 G A ALAS1 Silent p.G337G 0.26 TCGA-BR-4191-01 3 52258039 52258039 C T TLR9 Missense_Mutation p.C252Y 0.13 deleterious(0) probably_damaging(1) TCGA-BR-4191-01 3 52551576 52551576 G C STAB1 Missense_Mutation p.S1525T 0.35 tolerated(0.2) benign(0.026) TCGA-BR-4191-01 3 62253086 62253086 T C PTPRG Silent p.Y886Y 0.31 TCGA-BR-4191-01 4 165962340 165962340 T A TRIM60 Silent p.L372L 0.20 TCGA-BR-4191-01 4 2242050 2242050 C G HAUS3 Missense_Mutation p.E208D 0.56 deleterious(0.03) possibly_damaging(0.775) TCGA-BR-4191-01 4 4199436 4199436 G A OTOP1 Silent p.D375D 0.30 TCGA-BR-4191-01 4 90170468 90170468 G T GPRIN3 Missense_Mutation p.P265H 0.50 deleterious(0) probably_damaging(0.939) TCGA-BR-4191-01 5 112177228 112177228 C - APC Frame_Shift_Del p.N1979Kfs*65 0.28 TCGA-BR-4191-01 5 122724215 122724215 T A CEP120 Silent p.V447V 0.40 TCGA-BR-4191-01 5 127648476 127648476 C A FBN2 Missense_Mutation p.G1577C 0.04 deleterious(0) probably_damaging(1) TCGA-BR-4191-01 5 140056692 140056692 G C HARS Missense_Mutation p.S278C 0.22 deleterious(0.04) benign(0.005) TCGA-BR-4191-01 5 141033869 141033869 G A ARAP3 Missense_Mutation p.T1428I 0.59 tolerated_low_confidence(0.32) benign(0.001) TCGA-BR-4191-01 5 151043744 151043744 C T SPARC Missense_Mutation p.E263K 0.50 deleterious(0.01) probably_damaging(0.998) TCGA-BR-4191-01 5 169141060 169141060 G A DOCK2 Missense_Mutation p.S563N 0.09 tolerated(0.33) benign(0.013) TCGA-BR-4191-01 5 169141061 169141061 C T DOCK2 Silent p.S563S 0.09 TCGA-BR-4191-01 5 169533040 169533040 G A FOXI1 Missense_Mutation p.E27K 0.50 deleterious(0.01) probably_damaging(0.994) TCGA-BR-4191-01 5 33951616 33951616 C G SLC45A2 Intron 0.25 TCGA-BR-4191-01 5 44815308 44815308 A G MRPS30 3'UTR 0.25 TCGA-BR-4191-01 5 5200343 5200343 G T ADAMTS16 Missense_Mutation p.W471L 0.22 deleterious(0) probably_damaging(1) TCGA-BR-4191-01 5 52397195 52397195 C T MOCS2 Missense_Mutation p.R124K 0.12 deleterious(0) probably_damaging(0.98) TCGA-BR-4191-01 5 70820113 70820113 A C BDP1 Missense_Mutation p.E1912A 0.20 deleterious(0.02) benign(0.203) TCGA-BR-4191-01 5 80476075 80476075 G T RASGRF2 Missense_Mutation p.R923L 0.44 deleterious(0) probably_damaging(0.999) TCGA-BR-4191-01 5 82876166 82876166 A C VCAN Missense_Mutation p.K3368N 0.19 deleterious(0.01) benign(0.03) TCGA-BR-4191-01 5 85578545 85578545 C A NBPF22P RNA 0.44 TCGA-BR-4191-01 6 107067186 107067186 T G RTN4IP1 Missense_Mutation p.K171Q 0.28 tolerated(0.1) benign(0.028) TCGA-BR-4191-01 6 110048374 110048374 G A FIG4 Missense_Mutation p.D118N 0.34 tolerated(0.18) possibly_damaging(0.786) TCGA-BR-4191-01 6 11191199 11191199 G A NEDD9 Silent p.H301H 0.41 TCGA-BR-4191-01 6 16327558 16327558 C T ATXN1 Missense_Mutation p.M328I 0.58 tolerated(0.44) benign(0) TCGA-BR-4191-01 6 27278557 27278557 A C POM121L2 Missense_Mutation p.F465V 0.33 tolerated(0.43) benign(0.005) TCGA-BR-4191-01 6 30697834 30697834 T G FLOT1 Missense_Mutation p.S407R 0.24 tolerated(0.06) benign(0.025) TCGA-BR-4191-01 6 31106189 31106189 G C PSORS1C1 Intron 0.75 TCGA-BR-4191-01 6 32032696 32032696 G A TNXB Missense_Mutation p.T2248I 0.71 benign(0.014) TCGA-BR-4191-01 6 41162572 41162572 C T TREML2 Splice_Site p.X126_splice 0.38 TCGA-BR-4191-01 6 43323884 43323884 C G ZNF318 Splice_Site p.X397_splice 0.17 TCGA-BR-4191-01 6 51513896 51513896 A C PKHD1 Missense_Mutation p.F3766C 0.04 deleterious(0) probably_damaging(0.935) TCGA-BR-4191-01 6 656018 656018 G A HUS1B 3'UTR 0.56 TCGA-BR-4191-01 6 7211167 7211167 G A RREB1 Missense_Mutation p.A186T 0.05 tolerated(0.5) benign(0.02) TCGA-BR-4191-01 6 88210354 88210354 C G SLC35A1 Missense_Mutation p.A108G 0.35 deleterious(0.03) possibly_damaging(0.534) TCGA-BR-4191-01 7 100283967 100283967 C G GIGYF1 Missense_Mutation p.G262R 0.16 deleterious(0.05) unknown(0) TCGA-BR-4191-01 7 106871079 106871079 G C COG5 Missense_Mutation p.R748G 0.24 deleterious(0) possibly_damaging(0.838) TCGA-BR-4191-01 7 107744978 107744991 CCTCCAAGGAGCAT - LAMB4 Frame_Shift_Del p.D315Afs*16 0.20 TCGA-BR-4191-01 7 116199067 116199067 G C CAV1 Missense_Mutation p.S88T 0.14 deleterious(0.03) probably_damaging(0.995) TCGA-BR-4191-01 7 132192842 132192842 A C PLXNA4 Missense_Mutation p.L204R 0.21 deleterious(0) probably_damaging(1) TCGA-BR-4191-01 7 134927608 134927608 G T STRA8 Missense_Mutation p.A112S 0.40 tolerated(0.06) benign(0.029) TCGA-BR-4191-01 7 139106914 139106914 C G LUC7L2 Nonsense_Mutation p.S402* 0.38 TCGA-BR-4191-01 7 143140947 143140947 G T TAS2R60 Missense_Mutation p.K134N 0.15 deleterious(0) probably_damaging(0.999) TCGA-BR-4191-01 7 150645985 150645985 G C KCNH2 Missense_Mutation p.H851D 0.20 tolerated(0.06) benign(0.269) TCGA-BR-4191-01 7 76825675 76825675 C A FGL2 Missense_Mutation p.S414I 0.19 deleterious(0) benign(0.305) TCGA-BR-4191-01 7 83021901 83021901 C T SEMA3E Missense_Mutation p.R546Q 0.17 deleterious(0.02) benign(0.104) TCGA-BR-4191-01 7 87835720 87835720 C T SRI 3'UTR 0.26 TCGA-BR-4191-01 7 91631763 91631778 AAAGCAAAGGAACACT - AKAP9 Frame_Shift_Del p.E844Dfs*26 0.08 TCGA-BR-4191-01 7 94750141 94750141 G T PPP1R9A Missense_Mutation p.G549V 0.23 deleterious(0) probably_damaging(0.993) TCGA-BR-4191-01 7 99474447 99474447 A G OR2AE1 Silent p.D70D 0.22 TCGA-BR-4191-01 8 101105676 101105676 G T RGS22 Missense_Mutation p.P39Q 0.13 deleterious(0.04) benign(0.014) TCGA-BR-4191-01 8 110416883 110416883 G C PKHD1L1 Missense_Mutation p.D492H 0.22 deleterious(0.01) probably_damaging(0.962) TCGA-BR-4191-01 8 113694835 113694835 C G CSMD3 Missense_Mutation p.G838A 0.13 deleterious(0.03) probably_damaging(1) TCGA-BR-4191-01 8 116426704 116426704 C T TRPS1 Silent p.V1144V 0.27 TCGA-BR-4191-01 8 146156265 146156265 T A ZNF16 Missense_Mutation p.K636N 0.19 deleterious(0) probably_damaging(0.999) TCGA-BR-4191-01 8 18258347 18258347 T C NAT2 Silent p.N278N 0.27 TCGA-BR-4191-01 8 97797143 97797143 C T CPQ Silent p.F6F 0.23 TCGA-BR-4191-01 8 99148887 99148887 A T POP1 Nonsense_Mutation p.K397* 0.18 TCGA-BR-4191-01 9 123330664 123330664 G A CDK5RAP2 Missense_Mutation p.L44F 0.37 tolerated(0.05) possibly_damaging(0.587) TCGA-BR-4191-01 9 131295922 131295937 AGAGAAATTTGTGGTG - GLE1 Splice_Site p.X482_splice 0.19 TCGA-BR-4191-01 9 132400887 132400887 T C ASB6 Missense_Mutation p.H188R 0.35 deleterious(0.01) possibly_damaging(0.903) TCGA-BR-4191-01 9 136907050 136907050 G C BRD3 Silent p.A413A 0.20 TCGA-BR-4191-01 9 5090820 5090839 GTTAAAATTGGAGATTTTGG - JAK2 Frame_Shift_Del p.K991Nfs*12 0.27 TCGA-BR-4191-01 9 71628351 71628351 C T PRKACG Missense_Mutation p.V220M 0.21 deleterious(0) probably_damaging(0.998) TCGA-BR-4191-01 9 86258577 86258577 A T IDNK Missense_Mutation p.Q149L 0.36 deleterious(0.04) benign(0.035) TCGA-BR-4191-01 9 97062923 97062923 C T ZNF169 Silent p.L361L 0.15 TCGA-BR-4191-01 X 101911869 101911869 G A GPRASP1 Missense_Mutation p.D1010N 0.51 deleterious(0) probably_damaging(1) TCGA-BR-4191-01 X 115594028 115594028 C T CT83 5'UTR 0.44 TCGA-BR-4191-01 X 125686084 125686084 T G DCAF12L1 Missense_Mutation p.N170H 0.84 tolerated(0.06) probably_damaging(0.97) TCGA-BR-4191-01 X 128703265 128703265 G C OCRL Missense_Mutation p.W497C 0.66 deleterious(0) probably_damaging(1) TCGA-BR-4191-01 X 131220027 131220027 T A FRMD7 Nonsense_Mutation p.K140* 0.83 TCGA-BR-4191-01 X 135498705 135498705 A T GPR112 3'UTR 0.17 TCGA-BR-4191-01 X 14592654 14592654 C A GLRA2 Intron 0.34 TCGA-BR-4191-01 X 31947780 31947780 G A DMD Missense_Mutation p.P2282L 0.43 possibly_damaging(0.851) TCGA-BR-4191-01 X 32834625 32834625 A G DMD Missense_Mutation p.S164P 0.41 possibly_damaging(0.584) TCGA-BR-4191-01 X 63568642 63568643 AG - MTMR8 Frame_Shift_Del p.S210Wfs*9 0.37 TCGA-BR-4191-01 X 71350836 71350836 G T RGAG4 Silent p.A185A 0.56 TCGA-BR-4201-01 10 100143438 100143438 G T PYROXD2 3'UTR 0.25 TCGA-BR-4201-01 10 102896641 102896641 G A TLX1 Missense_Mutation p.V322I 0.20 deleterious(0.02) possibly_damaging(0.852) TCGA-BR-4201-01 10 103563735 103563735 C T MGEA5 Missense_Mutation p.E265K 0.14 deleterious(0.01) probably_damaging(0.987) TCGA-BR-4201-01 10 103868824 103868826 TCT - LDB1 In_Frame_Del p.K322del 0.17 TCGA-BR-4201-01 10 104158163 104158163 C - NFKB2 Frame_Shift_Del p.Y294Ifs*4 0.18 TCGA-BR-4201-01 10 104850727 104850727 C T NT5C2 Missense_Mutation p.R413H 0.13 tolerated(0.3) benign(0.038) TCGA-BR-4201-01 10 105046873 105046873 C T INA Missense_Mutation p.L383F 0.15 deleterious(0) probably_damaging(1) TCGA-BR-4201-01 10 105194617 105194617 G A PDCD11 Missense_Mutation p.E1244K 0.14 tolerated(0.93) benign(0.001) TCGA-BR-4201-01 10 108431115 108431115 C T SORCS1 Missense_Mutation p.C690Y 0.14 deleterious(0) probably_damaging(0.998) TCGA-BR-4201-01 10 108439027 108439027 T G SORCS1 Missense_Mutation p.N576T 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-BR-4201-01 10 115338458 115338458 C T HABP2 Missense_Mutation p.A214V 0.26 tolerated(0.17) benign(0.009) TCGA-BR-4201-01 10 115383370 115383370 T - NRAP Frame_Shift_Del p.N792Tfs*14 0.15 TCGA-BR-4201-01 10 116021030 116021030 C T VWA2 Missense_Mutation p.A116V 0.10 tolerated(0.18) benign(0.013) TCGA-BR-4201-01 10 121551681 121551681 T - INPP5F Frame_Shift_Del p.W211Gfs*5 0.14 TCGA-BR-4201-01 10 121583376 121583376 G A INPP5F Missense_Mutation p.M737I 0.08 tolerated(0.35) benign(0.009) TCGA-BR-4201-01 10 124380630 124380630 G A DMBT1 Missense_Mutation p.R1652Q 0.19 deleterious(0.04) possibly_damaging(0.606) TCGA-BR-4201-01 10 125801922 125801922 C T CHST15 Missense_Mutation p.V310M 0.15 tolerated(0.05) possibly_damaging(0.589) TCGA-BR-4201-01 10 129249805 129249805 G A DOCK1 3'UTR 0.33 TCGA-BR-4201-01 10 131506287 131506287 A G MGMT Missense_Mutation p.H116R 0.15 deleterious(0) probably_damaging(0.927) TCGA-BR-4201-01 10 131639112 131639112 G A EBF3 Silent p.Y510Y 0.19 TCGA-BR-4201-01 10 15255036 15255036 G - FAM171A1 Frame_Shift_Del p.H851Tfs*34 0.28 TCGA-BR-4201-01 10 15885239 15885239 C T FAM188A Silent p.S69S 0.16 TCGA-BR-4201-01 10 16949569 16949569 A - CUBN Frame_Shift_Del p.F2548Sfs*50 0.18 TCGA-BR-4201-01 10 21141488 21141488 C T NEBL Missense_Mutation p.V332I 0.11 tolerated(0.21) benign(0.006) TCGA-BR-4201-01 10 22618263 22618263 C T BMI1 Missense_Mutation p.A258V 0.19 tolerated_low_confidence(0.13) benign(0.023) TCGA-BR-4201-01 10 24833918 24833918 C T KIAA1217 Silent p.S1740S 0.19 TCGA-BR-4201-01 10 26414415 26414415 A G MYO3A Silent p.R664R 0.13 TCGA-BR-4201-01 10 26506539 26506539 C T GAD2 Missense_Mutation p.A26V 0.19 tolerated_low_confidence(0.14) benign(0.173) TCGA-BR-4201-01 10 27497331 27497331 C T ACBD5 Silent p.Q416Q 0.15 TCGA-BR-4201-01 10 27702350 27702350 G A PTCHD3 Missense_Mutation p.T277M 0.15 tolerated(0.1) possibly_damaging(0.753) TCGA-BR-4201-01 10 30611528 30611528 G A MTPAP Silent p.S337S 0.17 TCGA-BR-4201-01 10 3146003 3146003 G A PFKP Missense_Mutation p.A163T 0.19 tolerated(0.17) benign(0.029) TCGA-BR-4201-01 10 3174595 3174596 - A PFKP Frame_Shift_Ins p.M626Nfs*14 0.21 TCGA-BR-4201-01 10 33468855 33468855 G A NRP1 3'UTR 0.21 TCGA-BR-4201-01 10 33491741 33491741 C T NRP1 Intron 0.25 TCGA-BR-4201-01 10 38121237 38121237 C - ZNF248 Frame_Shift_Del p.G349Efs*75 0.18 TCGA-BR-4201-01 10 38343774 38343774 A G ZNF33A Missense_Mutation p.N241S 0.09 tolerated(0.47) benign(0.158) TCGA-BR-4201-01 10 38658885 38658885 G A HSD17B7P2 RNA 0.17 TCGA-BR-4201-01 10 42832171 42832171 C A RP11-313J2.1 RNA 0.18 TCGA-BR-4201-01 10 45798942 45798942 A G OR13A1 Missense_Mutation p.L310S 0.18 deleterious(0.01) probably_damaging(0.996) TCGA-BR-4201-01 10 45956826 45956826 G T MARCH8 Silent p.P92P 0.22 TCGA-BR-4201-01 10 48385926 48385926 G A RBP3 Missense_Mutation p.L1056F 0.24 deleterious(0.02) possibly_damaging(0.849) TCGA-BR-4201-01 10 50959917 50959917 G A OGDHL Silent p.S235S 0.19 TCGA-BR-4201-01 10 51464981 51464981 C - AGAP7 Frame_Shift_Del p.R492Lfs*25 0.13 TCGA-BR-4201-01 10 53458059 53458059 C T CSTF2T Silent p.A417A 0.17 TCGA-BR-4201-01 10 61835822 61835822 G A ANK3 Missense_Mutation p.T1606M 0.15 benign(0.255) TCGA-BR-4201-01 10 63759914 63759914 G A ARID5B Silent p.S189S 0.14 TCGA-BR-4201-01 10 67680208 67680208 T - CTNNA3 Frame_Shift_Del p.K856Nfs*3 0.20 TCGA-BR-4201-01 10 70670982 70670982 A - DDX50 Frame_Shift_Del p.S209Afs*19 0.15 TCGA-BR-4201-01 10 71164698 71164698 C T TACR2 Missense_Mutation p.G361R 0.28 tolerated(0.34) benign(0.071) TCGA-BR-4201-01 10 71880941 71880941 C T AIFM2 Silent p.L107L 0.34 TCGA-BR-4201-01 10 72025905 72025905 T C NPFFR1 Missense_Mutation p.N84D 0.13 deleterious(0) probably_damaging(0.998) TCGA-BR-4201-01 10 72637160 72637160 G A SGPL1 3'UTR 0.17 TCGA-BR-4201-01 10 73912658 73912658 C T ASCC1 Missense_Mutation p.A267T 0.15 deleterious(0) probably_damaging(0.999) TCGA-BR-4201-01 10 74268011 74268011 C T MICU1 Missense_Mutation p.R185Q 0.18 tolerated(0.47) benign(0.417) TCGA-BR-4201-01 10 75674570 75674570 C T PLAU Missense_Mutation p.A289V 0.30 deleterious(0) probably_damaging(0.998) TCGA-BR-4201-01 10 76788343 76788343 G A KAT6B Missense_Mutation p.R1254H 0.20 benign(0.009) TCGA-BR-4201-01 10 7829837 7829837 C T KIN Silent p.G20G 0.17 TCGA-BR-4201-01 10 8007484 8007484 G A TAF3 Missense_Mutation p.A671T 0.15 tolerated_low_confidence(0.36) benign(0.004) TCGA-BR-4201-01 10 81701740 81701740 G A SFTPD Missense_Mutation p.R174C 0.19 tolerated(0.07) possibly_damaging(0.892) TCGA-BR-4201-01 10 84711311 84711311 T C NRG3 Missense_Mutation p.F381L 0.17 tolerated(1) probably_damaging(0.994) TCGA-BR-4201-01 10 86014126 86014126 C T RGR Missense_Mutation p.A190V 0.16 tolerated(0.63) benign(0.001) TCGA-BR-4201-01 10 87407104 87407104 C T GRID1 Missense_Mutation p.R683Q 0.20 tolerated(0.15) possibly_damaging(0.623) TCGA-BR-4201-01 10 890938 890939 - T LARP4B Frame_Shift_Ins p.T163Nfs*8 0.19 TCGA-BR-4201-01 10 89653868 89653868 T C PTEN Splice_Site p.X55_splice 0.20 TCGA-BR-4201-01 10 89717770 89717770 A - PTEN Frame_Shift_Del p.K267Rfs*9 0.23 TCGA-BR-4201-01 10 90774042 90774042 G A FAS Nonsense_Mutation p.W281* 0.17 TCGA-BR-4201-01 10 91203598 91203598 A - SLC16A12 Frame_Shift_Del p.F73Lfs*22 0.21 TCGA-BR-4201-01 10 91478521 91478521 T - KIF20B Frame_Shift_Del p.F444Lfs*9 0.10 TCGA-BR-4201-01 10 93718995 93718995 G A BTAF1 Intron 0.19 TCGA-BR-4201-01 10 95169361 95169361 C T MYOF Missense_Mutation p.R190Q 0.14 tolerated(0.07) benign(0.087) TCGA-BR-4201-01 10 95719121 95719121 C T PIPSL RNA 0.12 TCGA-BR-4201-01 10 97194450 97194450 C T SORBS1 Missense_Mutation p.R34H 0.21 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-BR-4201-01 10 98146799 98146799 C T TLL2 Missense_Mutation p.C588Y 0.20 deleterious(0) probably_damaging(0.998) TCGA-BR-4201-01 10 98760984 98760984 C T SLIT1 Missense_Mutation p.C1497Y 0.17 deleterious(0) probably_damaging(0.998) TCGA-BR-4201-01 10 98816132 98816134 TTG - SLIT1 In_Frame_Del p.N415del 0.22 TCGA-BR-4201-01 10 99019160 99019160 T - ARHGAP19 Frame_Shift_Del p.N280Mfs*14 0.20 TCGA-BR-4201-01 10 99655720 99655720 G A CRTAC1 Silent p.D413D 0.19 TCGA-BR-4201-01 11 100211310 100211310 C T CNTN5 Missense_Mutation p.T949I 0.09 deleterious(0.03) possibly_damaging(0.896) TCGA-BR-4201-01 11 103090682 103090682 G T DYNC2H1 Missense_Mutation p.K2957N 0.15 probably_damaging(0.92) TCGA-BR-4201-01 11 107535793 107535794 - C ELMOD1 Frame_Shift_Ins p.M294Hfs*7 0.09 TCGA-BR-4201-01 11 10793117 10793117 G T CTR9 Nonsense_Mutation p.G800* 0.11 TCGA-BR-4201-01 11 108031665 108031665 C T NPAT Missense_Mutation p.R1383H 0.15 deleterious(0) probably_damaging(1) TCGA-BR-4201-01 11 108352942 108352944 AGA - KDELC2 In_Frame_Del p.L231del 0.13 TCGA-BR-4201-01 11 110035762 110035762 C - ZC3H12C Frame_Shift_Del p.D653Tfs*4 0.20 TCGA-BR-4201-01 11 111745971 111745971 T - FDXACB1 Frame_Shift_Del p.N517Ifs*7 0.19 TCGA-BR-4201-01 11 111922036 111922036 G A DLAT Missense_Mutation p.E493K 0.18 deleterious(0) probably_damaging(0.994) TCGA-BR-4201-01 11 112071414 112071414 G - BCO2 Frame_Shift_Del p.G316Efs*8 0.14 TCGA-BR-4201-01 11 113075153 113075153 C T NCAM1 Silent p.A150A 0.10 TCGA-BR-4201-01 11 113286314 113286314 A G DRD2 Silent p.I184I 0.14 TCGA-BR-4201-01 11 114168792 114168792 C T NNMT Nonsense_Mutation p.Q92* 0.11 TCGA-BR-4201-01 11 117651330 117651330 G A DSCAML1 Missense_Mutation p.T141M 0.15 deleterious(0) probably_damaging(1) TCGA-BR-4201-01 11 117985906 117985906 C T TMPRSS4 Missense_Mutation p.R355W 0.22 deleterious(0.01) possibly_damaging(0.849) TCGA-BR-4201-01 11 118183570 118183570 T C CD3E Missense_Mutation p.L114P 0.16 deleterious(0) probably_damaging(0.996) TCGA-BR-4201-01 11 120096485 120096485 C T OAF Missense_Mutation p.A116V 0.24 deleterious(0) possibly_damaging(0.828) TCGA-BR-4201-01 11 120187961 120187963 AAC - POU2F3 In_Frame_Del p.N390del 0.19 TCGA-BR-4201-01 11 120702613 120702613 G A GRIK4 Silent p.T188T 0.08 TCGA-BR-4201-01 11 120925921 120925921 G A TBCEL Missense_Mutation p.V206I 0.10 tolerated(0.15) benign(0.01) TCGA-BR-4201-01 11 124120712 124120712 G A OR8G1 Missense_Mutation p.C97Y 0.17 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-BR-4201-01 11 1263879 1263879 G A MUC5B Silent p.T1923T 0.22 TCGA-BR-4201-01 11 128709289 128709289 A G KCNJ1 Missense_Mutation p.S303P 0.18 tolerated(0.13) possibly_damaging(0.815) TCGA-BR-4201-01 11 128709635 128709635 T - KCNJ1 Frame_Shift_Del p.K187Nfs*13 0.20 TCGA-BR-4201-01 11 128842510 128842510 A G ARHGAP32 Silent p.A1283A 0.13 TCGA-BR-4201-01 11 129827738 129827738 G - PRDM10 Frame_Shift_Del p.P46Hfs*42 0.20 TCGA-BR-4201-01 11 129992333 129992333 T C APLP2 Missense_Mutation p.Y283H 0.14 tolerated(0.18) possibly_damaging(0.713) TCGA-BR-4201-01 11 1467040 1467040 C T BRSK2 Missense_Mutation p.R423W 0.14 deleterious(0) probably_damaging(0.973) TCGA-BR-4201-01 11 17134211 17134211 C T PIK3C2A Silent p.S1108S 0.17 TCGA-BR-4201-01 11 17483300 17483300 G T ABCC8 Missense_Mutation p.L218M 0.10 tolerated(0.11) benign(0.118) TCGA-BR-4201-01 11 17741373 17741373 C - MYOD1 Frame_Shift_Del p.D17Tfs*34 0.29 TCGA-BR-4201-01 11 19177422 19177422 T - ZDHHC13 Frame_Shift_Del p.L319* 0.23 TCGA-BR-4201-01 11 19256468 19256468 C T E2F8 Missense_Mutation p.G197R 0.10 deleterious(0) probably_damaging(0.962) TCGA-BR-4201-01 11 28045380 28045380 G A KIF18A Missense_Mutation p.S841L 0.21 tolerated(0.27) benign(0.002) TCGA-BR-4201-01 11 28058163 28058164 - T KIF18A Frame_Shift_Ins p.R666Kfs*29 0.17 TCGA-BR-4201-01 11 281195 281195 C T NLRP6 Silent p.G487G 0.19 TCGA-BR-4201-01 11 30926645 30926645 G A DCDC1 Missense_Mutation p.R1391W 0.20 deleterious(0.05) possibly_damaging(0.835) TCGA-BR-4201-01 11 3111807 3111807 C T OSBPL5 Silent p.Q793Q 0.22 TCGA-BR-4201-01 11 32636061 32636061 G A CCDC73 Silent p.F601F 0.10 TCGA-BR-4201-01 11 33358692 33358693 - T HIPK3 Frame_Shift_Ins p.C434Lfs*20 0.19 TCGA-BR-4201-01 11 33566554 33566554 A G KIAA1549L Silent p.P708P 0.12 TCGA-BR-4201-01 11 3423077 3423077 G A TSSC2 RNA 0.12 TCGA-BR-4201-01 11 35006241 35006241 C T PDHX Missense_Mutation p.A383V 0.19 tolerated(0.18) possibly_damaging(0.474) TCGA-BR-4201-01 11 35211585 35211585 G A CD44 Missense_Mutation p.D214N 0.28 tolerated(0.18) benign(0.005) TCGA-BR-4201-01 11 3661166 3661166 G A ART5 Missense_Mutation p.L165F 0.15 deleterious(0.01) benign(0.378) TCGA-BR-4201-01 11 4103494 4103494 G A STIM1 Nonsense_Mutation p.W350* 0.29 TCGA-BR-4201-01 11 4112533 4112533 G A STIM1 Silent p.S521S 0.16 TCGA-BR-4201-01 11 418746 418746 G A ANO9 Missense_Mutation p.R702C 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-BR-4201-01 11 44135753 44135753 C T EXT2 Silent p.G248G 0.15 TCGA-BR-4201-01 11 4621714 4621714 G A TRIM68 Missense_Mutation p.P417L 0.22 tolerated(0.17) benign(0.005) TCGA-BR-4201-01 11 47298400 47298400 G A MADD Missense_Mutation p.A361T 0.21 tolerated(0.07) benign(0.328) TCGA-BR-4201-01 11 47744543 47744543 T - FNBP4 Frame_Shift_Del p.G931Efs*17 0.33 TCGA-BR-4201-01 11 48134376 48134376 G A PTPRJ Missense_Mutation p.A65T 0.09 tolerated_low_confidence(0.18) benign(0.002) TCGA-BR-4201-01 11 487453 487453 C A PTDSS2 Missense_Mutation p.L202I 0.16 tolerated(0.48) benign(0.019) TCGA-BR-4201-01 11 55322311 55322311 G A OR4C15 Missense_Mutation p.V177M 0.10 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-BR-4201-01 11 55579394 55579394 G T OR5L1 Missense_Mutation p.C151F 0.23 tolerated(0.5) benign(0.033) TCGA-BR-4201-01 11 55606783 55606783 C A OR5D16 Missense_Mutation p.L186M 0.15 deleterious(0) probably_damaging(0.995) TCGA-BR-4201-01 11 55735780 55735781 - A OR10AG1 Frame_Shift_Ins p.L54Sfs*2 0.10 TCGA-BR-4201-01 11 56143445 56143445 G A OR8U1 Missense_Mutation p.A116T 0.23 deleterious(0.04) benign(0.018) TCGA-BR-4201-01 11 56237709 56237709 T - OR5M3 Frame_Shift_Del p.T89Qfs*8 0.15 TCGA-BR-4201-01 11 56258583 56258583 C A OR5M8 Missense_Mutation p.K88N 0.12 tolerated(0.07) benign(0.003) TCGA-BR-4201-01 11 56345140 56345140 C T OR5M10 Missense_Mutation p.D20N 0.19 tolerated(0.29) benign(0.012) TCGA-BR-4201-01 11 5699619 5699619 G A TRIM5 Nonsense_Mutation p.Q187* 0.24 TCGA-BR-4201-01 11 57077118 57077119 CT - TNKS1BP1 Frame_Shift_Del p.G1023Ifs*8 0.15 TCGA-BR-4201-01 11 57886596 57886596 A G OR9I1 Silent p.C107C 0.17 TCGA-BR-4201-01 11 58604809 58604809 T C GLYATL2 Missense_Mutation p.D83G 0.19 tolerated(0.07) possibly_damaging(0.5) TCGA-BR-4201-01 11 59245839 59245839 A - OR4D10 3'UTR 0.24 TCGA-BR-4201-01 11 59282835 59282835 G - OR4D9 Frame_Shift_Del p.G152Afs*6 0.10 TCGA-BR-4201-01 11 59480554 59480554 G A OR10V1 Silent p.C255C 0.21 TCGA-BR-4201-01 11 59574080 59574080 G A MRPL16 Missense_Mutation p.R166C 0.23 tolerated(0.07) probably_damaging(0.947) TCGA-BR-4201-01 11 60704376 60704376 C A TMEM132A Silent p.S1024S 0.20 TCGA-BR-4201-01 11 60707056 60707056 T C SLC15A3 Missense_Mutation p.Q444R 0.15 deleterious(0) probably_damaging(0.999) TCGA-BR-4201-01 11 60783258 60783258 G A CD6 Silent p.E487E 0.21 TCGA-BR-4201-01 11 61110231 61110231 C A DAK Silent p.S260S 0.23 TCGA-BR-4201-01 11 62292451 62292451 C T AHNAK Nonsense_Mutation p.W3146* 0.16 TCGA-BR-4201-01 11 62433383 62433383 C T METTL12 Missense_Mutation p.P11L 0.24 tolerated_low_confidence(0.38) benign(0.003) TCGA-BR-4201-01 11 62446025 62446025 A G UBXN1 Silent p.T54T 0.22 TCGA-BR-4201-01 11 6291537 6291537 G A CCKBR Missense_Mutation p.R208H 0.10 tolerated(0.22) benign(0.005) TCGA-BR-4201-01 11 6292725 6292725 G A CCKBR Silent p.S432S 0.20 TCGA-BR-4201-01 11 63488463 63488464 - A RTN3 Frame_Shift_Ins p.H833Afs*97 0.20 TCGA-BR-4201-01 11 64026040 64026040 C T PLCB3 Missense_Mutation p.P370S 0.28 tolerated(0.07) possibly_damaging(0.731) TCGA-BR-4201-01 11 64054479 64054479 C T GPR137 Nonsense_Mutation p.R192* 0.23 TCGA-BR-4201-01 11 64329603 64329603 G A SLC22A11 Missense_Mutation p.G209S 0.24 tolerated(0.07) possibly_damaging(0.775) TCGA-BR-4201-01 11 64428294 64428294 G A NRXN2 Nonsense_Mutation p.R706* 0.11 TCGA-BR-4201-01 11 65684985 65684985 C - C11orf68 Frame_Shift_Del p.G276Vfs*17 0.25 TCGA-BR-4201-01 11 66241301 66241301 G A PELI3 Missense_Mutation p.E249K 0.23 tolerated(0.5) benign(0.265) TCGA-BR-4201-01 11 66262922 66262922 C T DPP3 Silent p.S513S 0.25 TCGA-BR-4201-01 11 66475139 66475139 G A SPTBN2 Missense_Mutation p.R501C 0.17 deleterious(0) probably_damaging(0.999) TCGA-BR-4201-01 11 6655115 6655115 C T DCHS1 Missense_Mutation p.R708H 0.10 tolerated(0.1) benign(0.003) TCGA-BR-4201-01 11 6661810 6661810 C T DCHS1 Silent p.S345S 0.25 TCGA-BR-4201-01 11 67076941 67076941 C T SSH3 Missense_Mutation p.R379C 0.15 deleterious(0) probably_damaging(1) TCGA-BR-4201-01 11 67191613 67191613 C T CARNS1 Silent p.N798N 0.20 TCGA-BR-4201-01 11 67925937 67925937 T - SUV420H1 Frame_Shift_Del p.I626* 0.23 TCGA-BR-4201-01 11 68582821 68582821 T - CPT1A Frame_Shift_Del p.K41Rfs*29 0.14 TCGA-BR-4201-01 11 71725087 71725087 C T NUMA1 Silent p.R1154R 0.08 TCGA-BR-4201-01 11 71725245 71725245 C T NUMA1 Missense_Mutation p.A1102T 0.20 benign(0.003) TCGA-BR-4201-01 11 71821248 71821248 C A ANAPC15 Missense_Mutation p.E68D 0.12 tolerated(0.19) benign(0.208) TCGA-BR-4201-01 11 73106159 73106159 G A RELT Silent p.Q358Q 0.19 TCGA-BR-4201-01 11 73789381 73789381 T - C2CD3 Frame_Shift_Del p.K1461Sfs*30 0.17 TCGA-BR-4201-01 11 75152219 75152219 G - GDPD5 Frame_Shift_Del p.L488Sfs*48 0.32 TCGA-BR-4201-01 11 763457 763457 G A TALDO1 Missense_Mutation p.R192H 0.22 deleterious(0) probably_damaging(0.989) TCGA-BR-4201-01 11 77386207 77386207 G A RSF1 Missense_Mutation p.R1146C 0.19 deleterious(0) probably_damaging(0.998) TCGA-BR-4201-01 11 77835228 77835229 - G ALG8 Frame_Shift_Ins p.F71Lfs*5 0.17 TCGA-BR-4201-01 11 77884897 77884897 C T KCTD21 Missense_Mutation p.G235D 0.19 deleterious(0.01) probably_damaging(0.992) TCGA-BR-4201-01 11 799897 799897 G A PIDD Missense_Mutation p.R798C 0.21 deleterious(0) probably_damaging(1) TCGA-BR-4201-01 11 82560971 82560971 G A PRCP Nonsense_Mutation p.R267* 0.19 TCGA-BR-4201-01 11 82877219 82877219 A - PCF11 Frame_Shift_Del p.K429Rfs*7 0.17 TCGA-BR-4201-01 11 83984291 83984291 C T DLG2 Intron 0.16 TCGA-BR-4201-01 11 85436047 85436047 C T SYTL2 Missense_Mutation p.A485T 0.16 tolerated(0.09) benign(0.004) TCGA-BR-4201-01 11 85622403 85622403 A T CCDC83 Missense_Mutation p.D251V 0.10 tolerated(0.06) possibly_damaging(0.89) TCGA-BR-4201-01 11 85689112 85689112 C T PICALM Intron 0.21 TCGA-BR-4201-01 11 86123507 86123507 C A CCDC81 Missense_Mutation p.L433M 0.13 tolerated(0.07) probably_damaging(0.959) TCGA-BR-4201-01 11 88068108 88068108 A - CTSC Frame_Shift_Del p.F105Lfs*10 0.24 TCGA-BR-4201-01 11 95564282 95564282 A G CEP57 Silent p.G455G 0.19 TCGA-BR-4201-01 12 100452815 100452815 A G UHRF1BP1L Missense_Mutation p.V747A 0.14 tolerated(0.98) benign(0.001) TCGA-BR-4201-01 12 100790165 100790165 A C SLC17A8 Silent p.R216R 0.16 TCGA-BR-4201-01 12 10131562 10131562 C T CLEC12A Intron 0.10 TCGA-BR-4201-01 12 10374385 10374385 G A GABARAPL1 Splice_Site p.X97_splice 0.17 TCGA-BR-4201-01 12 10772835 10772836 AC - STYK1 Frame_Shift_Del p.L393Tfs*9 0.25 TCGA-BR-4201-01 12 108011205 108011205 C T BTBD11 Silent p.H741H 0.14 TCGA-BR-4201-01 12 108603945 108603945 G A WSCD2 Missense_Mutation p.G182D 0.39 deleterious(0) benign(0.253) TCGA-BR-4201-01 12 108634217 108634217 C - WSCD2 Frame_Shift_Del p.I415Sfs*23 0.15 TCGA-BR-4201-01 12 108942899 108942899 C T SART3 Missense_Mutation p.R135H 0.10 deleterious(0) probably_damaging(0.978) TCGA-BR-4201-01 12 108954646 108954646 C T SART3 Silent p.Q95Q 0.29 TCGA-BR-4201-01 12 110897617 110897617 G A GPN3 Nonsense_Mutation p.R109* 0.18 TCGA-BR-4201-01 12 111085688 111085688 G A TCTN1 Silent p.P590P 0.25 TCGA-BR-4201-01 12 11139175 11139175 G A TAS2R50 Silent p.S95S 0.10 TCGA-BR-4201-01 12 112171759 112171759 C T ACAD10 Missense_Mutation p.P507L 0.23 tolerated(0.2) benign(0.14) TCGA-BR-4201-01 12 112184008 112184008 A - ACAD10 Frame_Shift_Del p.K758Nfs*6 0.16 TCGA-BR-4201-01 12 11506766 11506766 G A PRB1 Nonsense_Mutation p.R91* 0.38 TCGA-BR-4201-01 12 11545864 11545864 G T PRB2 Missense_Mutation p.P383Q 0.18 tolerated_low_confidence(0.34) unknown(0) TCGA-BR-4201-01 12 117710317 117710317 G A NOS1 Missense_Mutation p.A571V 0.15 deleterious(0) probably_damaging(0.999) TCGA-BR-4201-01 12 120589033 120589033 C T GCN1L1 Missense_Mutation p.G1409S 0.25 probably_damaging(1) TCGA-BR-4201-01 12 120750802 120750802 G A SIRT4 Missense_Mutation p.R303H 0.30 deleterious(0) benign(0.028) TCGA-BR-4201-01 12 121448638 121448638 G A C12orf43 Silent p.L94L 0.20 TCGA-BR-4201-01 12 122677528 122677528 T A LRRC43 Missense_Mutation p.D442E 0.23 tolerated(0.08) probably_damaging(0.978) TCGA-BR-4201-01 12 123060124 123060124 C T KNTC1 Missense_Mutation p.A806V 0.17 tolerated(0.16) benign(0.1) TCGA-BR-4201-01 12 123307941 123307941 A - CCDC62 Frame_Shift_Del p.N679Ifs*18 0.17 TCGA-BR-4201-01 12 124257468 124257468 T - DNAH10 Frame_Shift_Del p.F102Sfs*15 0.18 TCGA-BR-4201-01 12 12491444 12491444 G A MANSC1 Nonsense_Mutation p.Q92* 0.15 TCGA-BR-4201-01 12 124979699 124979699 C T NCOR2 Silent p.T33T 0.21 TCGA-BR-4201-01 12 125613986 125613986 C T AACS Missense_Mutation p.A510V 0.09 deleterious(0) probably_damaging(0.941) TCGA-BR-4201-01 12 126004054 126004054 G A TMEM132B Silent p.G387G 0.22 TCGA-BR-4201-01 12 130184915 130184915 G A TMEM132D Silent p.D136D 0.30 TCGA-BR-4201-01 12 132238992 132238992 G A SFSWAP Missense_Mutation p.A468T 0.30 deleterious(0.02) probably_damaging(0.998) TCGA-BR-4201-01 12 132281835 132281835 G A SFSWAP Missense_Mutation p.A935T 0.13 tolerated_low_confidence(0.16) unknown(0) TCGA-BR-4201-01 12 132514298 132514298 C T EP400 Missense_Mutation p.P1812S 0.20 unknown(0) TCGA-BR-4201-01 12 133418014 133418014 C A CHFR 3'UTR 0.42 TCGA-BR-4201-01 12 14650841 14650841 T C ATF7IP Missense_Mutation p.I1216T 0.13 deleterious_low_confidence(0.01) unknown(0) TCGA-BR-4201-01 12 1943444 1943444 G A LRTM2 Missense_Mutation p.D224N 0.19 deleterious(0) probably_damaging(1) TCGA-BR-4201-01 12 21926563 21926563 A T KCNJ8 5'UTR 0.20 TCGA-BR-4201-01 12 22005044 22005044 T C ABCC9 Missense_Mutation p.Q919R 0.14 deleterious(0.04) benign(0.019) TCGA-BR-4201-01 12 23893839 23893839 G A SOX5 Missense_Mutation p.R235C 0.18 deleterious(0) probably_damaging(0.997) TCGA-BR-4201-01 12 25267796 25267796 A G CASC1 Missense_Mutation p.W469R 0.15 deleterious(0) probably_damaging(1) TCGA-BR-4201-01 12 25398281 25398281 C T KRAS Missense_Mutation p.G13D 0.24 deleterious(0.04) possibly_damaging(0.506) TCGA-BR-4201-01 12 2566787 2566787 C T CACNA1C Silent p.L224L 0.14 TCGA-BR-4201-01 12 25679780 25679780 G T IFLTD1 Missense_Mutation p.Q201K 0.13 deleterious(0) probably_damaging(0.997) TCGA-BR-4201-01 12 2602496 2602496 A G CACNA1C Missense_Mutation p.M353V 0.16 deleterious(0.01) probably_damaging(0.91) TCGA-BR-4201-01 12 27568857 27568857 A G ARNTL2 Missense_Mutation p.T548A 0.08 tolerated(0.22) benign(0.002) TCGA-BR-4201-01 12 2921981 2921981 T G ITFG2 Missense_Mutation p.F19V 0.10 deleterious(0.02) probably_damaging(1) TCGA-BR-4201-01 12 31585981 31585981 T - DENND5B Intron 0.43 TCGA-BR-4201-01 12 32996207 32996207 G A PKP2 Silent p.G473G 0.14 TCGA-BR-4201-01 12 33529716 33529716 T C SYT10 3'UTR 0.20 TCGA-BR-4201-01 12 34179081 34179081 A T ALG10 Missense_Mutation p.D218V 0.09 tolerated(0.06) benign(0.027) TCGA-BR-4201-01 12 43846079 43846079 T G ADAMTS20 Missense_Mutation p.M693L 0.17 deleterious(0.02) benign(0.052) TCGA-BR-4201-01 12 4385203 4385203 C T CCND2 Silent p.V76V 0.09 TCGA-BR-4201-01 12 44605117 44605117 A - TMEM117 Frame_Shift_Del p.K186Nfs*24 0.20 TCGA-BR-4201-01 12 45567083 45567083 C T PLEKHA8P1 RNA 0.23 TCGA-BR-4201-01 12 45567160 45567160 C T PLEKHA8P1 RNA 0.16 TCGA-BR-4201-01 12 45803165 45803165 T C ANO6 Missense_Mutation p.F657L 0.22 tolerated(0.58) benign(0.065) TCGA-BR-4201-01 12 4662279 4662280 AG - RAD51AP1 Frame_Shift_Del p.K248Efs*3 0.13 TCGA-BR-4201-01 12 46622973 46622973 C T SLC38A1 Missense_Mutation p.A93T 0.12 deleterious(0.04) possibly_damaging(0.884) TCGA-BR-4201-01 12 47471213 47471213 C T AMIGO2 3'UTR 0.16 TCGA-BR-4201-01 12 47472384 47472385 - T AMIGO2 Frame_Shift_Ins p.N134Kfs*69 0.18 TCGA-BR-4201-01 12 47629502 47629502 G A PCED1B Missense_Mutation p.R219H 0.22 deleterious(0) possibly_damaging(0.822) TCGA-BR-4201-01 12 48238574 48238574 C T VDR Silent p.K463K 0.22 TCGA-BR-4201-01 12 4920249 4920249 C T KCNA6 Missense_Mutation p.R348W 0.19 deleterious(0) probably_damaging(0.999) TCGA-BR-4201-01 12 49361733 49361733 C T WNT10B Missense_Mutation p.R236H 0.29 deleterious(0) probably_damaging(0.999) TCGA-BR-4201-01 12 49424718 49424718 G A KMT2D Silent p.D4543D 0.14 TCGA-BR-4201-01 12 49434552 49434552 C T KMT2D Missense_Mutation p.R2334Q 0.27 probably_damaging(0.99) TCGA-BR-4201-01 12 49484980 49484980 C T DHH Missense_Mutation p.A166T 0.17 deleterious(0) probably_damaging(0.999) TCGA-BR-4201-01 12 49743155 49743155 G A DNAJC22 Missense_Mutation p.R167H 0.18 tolerated(0.12) benign(0.097) TCGA-BR-4201-01 12 49993443 49993445 CTT - FAM186B In_Frame_Del p.K660del 0.23 TCGA-BR-4201-01 12 50025229 50025229 C - PRPF40B Frame_Shift_Del p.M46* 0.16 TCGA-BR-4201-01 12 50197796 50197796 C - NCKAP5L Frame_Shift_Del p.G11Vfs*64 0.12 TCGA-BR-4201-01 12 50452564 50452564 C T ASIC1 Silent p.A5A 0.18 TCGA-BR-4201-01 12 51393164 51393164 C T SLC11A2 Missense_Mutation p.A220T 0.18 tolerated(0.14) benign(0.177) TCGA-BR-4201-01 12 51393180 51393180 G A SLC11A2 Silent p.G214G 0.17 TCGA-BR-4201-01 12 52826943 52826943 G A KRT75 Missense_Mutation p.P198S 0.23 deleterious(0.03) possibly_damaging(0.733) TCGA-BR-4201-01 12 52962173 52962173 G A KRT74 Missense_Mutation p.R379C 0.22 tolerated(1) benign(0) TCGA-BR-4201-01 12 53680232 53680232 C A ESPL1 Missense_Mutation p.P1238T 0.13 tolerated(0.15) benign(0.004) TCGA-BR-4201-01 12 53681832 53681832 G A ESPL1 Missense_Mutation p.R1418Q 0.23 tolerated(0.29) benign(0.035) TCGA-BR-4201-01 12 53681905 53681905 A T ESPL1 Silent p.P1442P 0.14 TCGA-BR-4201-01 12 53700549 53700549 C A C12orf10 Missense_Mutation p.S284Y 0.16 deleterious(0.02) benign(0.285) TCGA-BR-4201-01 12 53701642 53701642 G A AAAS Missense_Mutation p.A468V 0.13 deleterious(0) probably_damaging(0.987) TCGA-BR-4201-01 12 56348059 56348059 C T PMEL Missense_Mutation p.R649H 0.15 tolerated(0.09) benign(0.005) TCGA-BR-4201-01 12 56429093 56429093 G A IKZF4 Missense_Mutation p.R579Q 0.15 deleterious(0) probably_damaging(0.999) TCGA-BR-4201-01 12 56847512 56847512 C T MIP Missense_Mutation p.A130T 0.15 deleterious(0) probably_damaging(0.96) TCGA-BR-4201-01 12 57111870 57111870 G T NACA Intron 0.13 TCGA-BR-4201-01 12 57486328 57486328 G A NAB2 Missense_Mutation p.R352Q 0.10 deleterious(0.02) possibly_damaging(0.627) TCGA-BR-4201-01 12 57574224 57574224 G A LRP1 Missense_Mutation p.R1783Q 0.08 benign(0.079) TCGA-BR-4201-01 12 57627077 57627077 G - SHMT2 Frame_Shift_Del p.G326Afs*10 0.28 TCGA-BR-4201-01 12 57627627 57627627 G A SHMT2 Missense_Mutation p.A407T 0.13 tolerated(0.17) benign(0.042) TCGA-BR-4201-01 12 57909800 57909800 C T MARS Intron 0.17 TCGA-BR-4201-01 12 57921419 57921419 C A MBD6 Missense_Mutation p.P738T 0.17 deleterious_low_confidence(0) unknown(0) TCGA-BR-4201-01 12 58015593 58015593 C A SLC26A10 Missense_Mutation p.L226I 0.40 deleterious(0.04) probably_damaging(0.999) TCGA-BR-4201-01 12 58121846 58121846 G A AGAP2 Silent p.I880I 0.21 TCGA-BR-4201-01 12 62979234 62979234 T C MON2 Silent p.H1620H 0.17 TCGA-BR-4201-01 12 6752705 6752705 C T ACRBP Silent p.S359S 0.15 TCGA-BR-4201-01 12 6861114 6861114 G A MLF2 Missense_Mutation p.P53S 0.13 tolerated(0.58) benign(0.183) TCGA-BR-4201-01 12 69109410 69109410 C A NUP107 Missense_Mutation p.P325T 0.18 deleterious(0) probably_damaging(1) TCGA-BR-4201-01 12 6978878 6978878 G A TPI1 Missense_Mutation p.V199I 0.21 deleterious(0.05) benign(0.078) TCGA-BR-4201-01 12 69980567 69980567 T C CCT2 Missense_Mutation p.L38S 0.10 deleterious(0) probably_damaging(0.981) TCGA-BR-4201-01 12 7014793 7014793 G A LRRC23 5'UTR 0.16 TCGA-BR-4201-01 12 72094768 72094768 G - TMEM19 Frame_Shift_Del p.*337Efs*9 0.15 TCGA-BR-4201-01 12 72307610 72307610 T C TBC1D15 Silent p.Y452Y 0.26 TCGA-BR-4201-01 12 75804255 75804255 A - GLIPR1L2 Frame_Shift_Del p.K94Nfs*105 0.10 TCGA-BR-4201-01 12 77444494 77444494 C T E2F7 Missense_Mutation p.E134K 0.17 deleterious(0.04) benign(0.063) TCGA-BR-4201-01 12 80750652 80750652 C G OTOGL Missense_Mutation p.Q1984E 0.19 tolerated(1) benign(0.003) TCGA-BR-4201-01 12 8245544 8245544 C T NECAP1 Missense_Mutation p.P190L 0.30 deleterious(0.02) benign(0.107) TCGA-BR-4201-01 12 8926004 8926004 G A RIMKLB Missense_Mutation p.G262D 0.17 deleterious(0) probably_damaging(1) TCGA-BR-4201-01 12 89744647 89744647 G A DUSP6 Nonsense_Mutation p.R186* 0.20 TCGA-BR-4201-01 12 91552114 91552114 C T DCN Missense_Mutation p.R166Q 0.14 tolerated(0.86) benign(0.004) TCGA-BR-4201-01 12 9246138 9246138 C T A2M Silent p.V721V 0.18 TCGA-BR-4201-01 12 9305467 9305467 G A PZP Silent p.C1358C 0.14 TCGA-BR-4201-01 12 97079013 97079013 C T C12orf55 Missense_Mutation p.A2004V 0.21 deleterious(0) benign(0.096) TCGA-BR-4201-01 13 101910909 101910909 G A NALCN Missense_Mutation p.S384F 0.09 deleterious(0.05) possibly_damaging(0.565) TCGA-BR-4201-01 13 103418898 103418898 T C TEX30 Silent p.Q179Q 0.11 TCGA-BR-4201-01 13 111944543 111944543 G A ARHGEF7 Missense_Mutation p.R759H 0.08 deleterious_low_confidence(0.03) probably_damaging(0.989) TCGA-BR-4201-01 13 113771857 113771857 C T F7 Missense_Mutation p.A251V 0.21 deleterious(0) probably_damaging(1) TCGA-BR-4201-01 13 113854825 113854825 G A PCID2 Silent p.Y14Y 0.16 TCGA-BR-4201-01 13 114535359 114535359 G A GAS6 Silent p.A352A 0.21 TCGA-BR-4201-01 13 19752522 19752522 G - TUBA3C Frame_Shift_Del p.T80Kfs*13 0.17 TCGA-BR-4201-01 13 20220968 20220969 - A MPHOSPH8 Frame_Shift_Ins p.E255Rfs*11 0.16 TCGA-BR-4201-01 13 20399055 20399055 C T ZMYM5 Silent p.T524T 0.19 TCGA-BR-4201-01 13 20426142 20426142 A T ZMYM5 Missense_Mutation p.V60D 0.12 deleterious_low_confidence(0.04) possibly_damaging(0.904) TCGA-BR-4201-01 13 20577064 20577064 G A ZMYM2 Missense_Mutation p.A308T 0.21 tolerated(0.42) possibly_damaging(0.744) TCGA-BR-4201-01 13 20625630 20625630 C T ZMYM2 Missense_Mutation p.R784C 0.23 deleterious(0) possibly_damaging(0.776) TCGA-BR-4201-01 13 20641139 20641139 T C ZMYM2 Missense_Mutation p.V1094A 0.22 tolerated(0.71) benign(0.006) TCGA-BR-4201-01 13 23909127 23909127 A - SACS Frame_Shift_Del p.F2963Sfs*15 0.13 TCGA-BR-4201-01 13 24858406 24858406 T C SPATA13 Silent p.N766N 0.25 TCGA-BR-4201-01 13 24861032 24861032 C T SPATA13 Missense_Mutation p.R871W 0.15 deleterious(0) possibly_damaging(0.827) TCGA-BR-4201-01 13 28841313 28841313 G A PAN3 Missense_Mutation p.R552H 0.15 tolerated(0.26) probably_damaging(1) TCGA-BR-4201-01 13 30091734 30091734 C T SLC7A1 Missense_Mutation p.V496M 0.19 deleterious(0) probably_damaging(0.968) TCGA-BR-4201-01 13 31205139 31205139 C T USPL1 Silent p.D132D 0.12 TCGA-BR-4201-01 13 36888477 36888477 C T SPG20 Missense_Mutation p.R457Q 0.18 deleterious(0) probably_damaging(0.983) TCGA-BR-4201-01 13 37581201 37581201 A - EXOSC8 Frame_Shift_Del p.N162Mfs*9 0.18 TCGA-BR-4201-01 13 37598478 37598478 T C SUPT20H Silent p.S477S 0.15 TCGA-BR-4201-01 13 38161966 38161966 G T POSTN Missense_Mutation p.P200H 0.10 deleterious(0) probably_damaging(0.943) TCGA-BR-4201-01 13 39588012 39588012 G A PROSER1 Silent p.A459A 0.20 TCGA-BR-4201-01 13 40268797 40268797 T C COG6 Silent p.A367A 0.14 TCGA-BR-4201-01 13 41341161 41341161 T - MRPS31 Frame_Shift_Del p.N54Ifs*12 0.11 TCGA-BR-4201-01 13 46549634 46549634 C T ZC3H13 Missense_Mutation p.R751Q 0.44 unknown(0) TCGA-BR-4201-01 13 48570982 48570982 T - SUCLA2 Frame_Shift_Del p.K89Nfs*2 0.25 TCGA-BR-4201-01 13 50065970 50065970 A - SETDB2 Frame_Shift_Del p.I718Yfs*11 0.19 TCGA-BR-4201-01 13 50306509 50306511 ATC - KPNA3 In_Frame_Del p.D127del 0.08 TCGA-BR-4201-01 13 52639603 52639603 G C NEK5 Missense_Mutation p.S689R 0.08 tolerated_low_confidence(0.5) benign(0.014) TCGA-BR-4201-01 13 77663139 77663139 G A MYCBP2 Missense_Mutation p.P3480L 0.14 probably_damaging(0.994) TCGA-BR-4201-01 13 79175623 79175623 T - POU4F1 Frame_Shift_Del p.K396Rfs*18 0.16 TCGA-BR-4201-01 13 84455509 84455509 T - SLITRK1 Frame_Shift_Del p.K45Rfs*64 0.12 TCGA-BR-4201-01 13 96454019 96454019 G A UGGT2 3'UTR 0.17 TCGA-BR-4201-01 13 96665657 96665657 G A UGGT2 Silent p.A188A 0.11 TCGA-BR-4201-01 13 97639911 97639911 A G OXGR1 Missense_Mutation p.Y35H 0.09 deleterious(0) probably_damaging(1) TCGA-BR-4201-01 14 100551127 100551127 A G EVL Missense_Mutation p.N39D 0.28 deleterious(0.03) possibly_damaging(0.512) TCGA-BR-4201-01 14 101200555 101200555 C - DLK1 Frame_Shift_Del p.P160Lfs*50 0.15 TCGA-BR-4201-01 14 101498347 101498347 T - MIR543 RNA 0.27 TCGA-BR-4201-01 14 102471206 102471206 G A DYNC1H1 Silent p.E1719E 0.12 TCGA-BR-4201-01 14 102494049 102494049 G A DYNC1H1 Missense_Mutation p.E3048K 0.16 probably_damaging(0.969) TCGA-BR-4201-01 14 102843129 102843129 C T TECPR2 Missense_Mutation p.P24L 0.20 deleterious(0) probably_damaging(1) TCGA-BR-4201-01 14 103806054 103806054 C T EIF5 Missense_Mutation p.L329F 0.09 deleterious(0) probably_damaging(1) TCGA-BR-4201-01 14 103986168 103986168 G A CKB 3'UTR 0.18 TCGA-BR-4201-01 14 105409290 105409290 G A AHNAK2 Silent p.D4166D 0.25 TCGA-BR-4201-01 14 105415997 105415997 C T AHNAK2 Missense_Mutation p.A1931T 0.19 benign(0.013) TCGA-BR-4201-01 14 105692604 105692604 T - BRF1 Frame_Shift_Del p.K313Nfs*20 0.09 TCGA-BR-4201-01 14 105693010 105693010 G - BRF1 Frame_Shift_Del p.S293Rfs*11 0.22 TCGA-BR-4201-01 14 106994115 106994115 A G IGHV3-48 Missense_Mutation p.V17A 0.07 deleterious_low_confidence(0.04) benign(0.433) TCGA-BR-4201-01 14 20928912 20928912 C T TMEM55B Missense_Mutation p.A86T 0.12 tolerated(0.29) benign(0.111) TCGA-BR-4201-01 14 21955823 21955823 G - TOX4 Frame_Shift_Del p.L99Sfs*2 0.16 TCGA-BR-4201-01 14 22740304 22740304 C T TRAV38-1 Missense_Mutation p.R70C 0.26 deleterious(0.05) benign(0.055) TCGA-BR-4201-01 14 23243309 23243309 G A SLC7A7 Missense_Mutation p.P421L 0.14 deleterious(0.01) possibly_damaging(0.751) TCGA-BR-4201-01 14 23371030 23371030 G - RBM23 Frame_Shift_Del p.Q437Rfs*105 0.19 TCGA-BR-4201-01 14 23829153 23829153 C T EFS Silent p.P178P 0.21 TCGA-BR-4201-01 14 23886745 23886745 T C MYH7 Silent p.A1440A 0.12 TCGA-BR-4201-01 14 23947259 23947259 T - NGDN 3'UTR 0.20 TCGA-BR-4201-01 14 24032638 24032638 G A AP1G2 Missense_Mutation p.A454V 0.27 tolerated(0.07) benign(0.255) TCGA-BR-4201-01 14 24542713 24542713 G T CPNE6 Missense_Mutation p.E58D 0.16 tolerated(0.75) benign(0.006) TCGA-BR-4201-01 14 24542860 24542860 C T CPNE6 Silent p.L107L 0.22 TCGA-BR-4201-01 14 24621133 24621133 C T RNF31 Missense_Mutation p.R688W 0.21 deleterious(0) probably_damaging(0.982) TCGA-BR-4201-01 14 24731001 24731001 G A TGM1 Silent p.Y136Y 0.14 TCGA-BR-4201-01 14 24838782 24838782 G A NFATC4 Missense_Mutation p.G123S 0.23 tolerated_low_confidence(0.12) benign(0.109) TCGA-BR-4201-01 14 31364745 31364745 T C STRN3 Missense_Mutation p.T756A 0.12 deleterious(0) possibly_damaging(0.626) TCGA-BR-4201-01 14 31588960 31588960 C T HECTD1 Missense_Mutation p.R1784H 0.15 deleterious(0) possibly_damaging(0.474) TCGA-BR-4201-01 14 37739702 37739703 AG - MIPOL1 Frame_Shift_Del p.E156Sfs*2 0.11 TCGA-BR-4201-01 14 38679606 38679606 C A SSTR1 Missense_Mutation p.L338I 0.08 deleterious(0.03) possibly_damaging(0.899) TCGA-BR-4201-01 14 38679687 38679687 G A SSTR1 Missense_Mutation p.V365M 0.16 tolerated(0.1) benign(0.06) TCGA-BR-4201-01 14 39601231 39601231 C T GEMIN2 Missense_Mutation p.R235W 0.14 deleterious(0.04) probably_damaging(0.958) TCGA-BR-4201-01 14 45603570 45603570 C A FKBP3 Missense_Mutation p.Q30H 0.23 tolerated(0.07) benign(0.025) TCGA-BR-4201-01 14 50788220 50788220 A - ATP5S Frame_Shift_Del p.I22Ffs*8 0.18 TCGA-BR-4201-01 14 51208344 51208344 C A NIN Nonsense_Mutation p.E1802* 0.24 TCGA-BR-4201-01 14 51375597 51375597 A G PYGL Missense_Mutation p.S752P 0.20 deleterious(0) possibly_damaging(0.854) TCGA-BR-4201-01 14 52534592 52534592 G A NID2 Missense_Mutation p.A173V 0.20 tolerated(0.31) benign(0.005) TCGA-BR-4201-01 14 52535601 52535601 G A NID2 Missense_Mutation p.P38S 0.13 deleterious(0.01) possibly_damaging(0.908) TCGA-BR-4201-01 14 52735263 52735263 C T PTGDR Missense_Mutation p.A244V 0.22 tolerated(0.31) benign(0.004) TCGA-BR-4201-01 14 53619158 53619158 C T DDHD1 Missense_Mutation p.G220D 0.40 tolerated(0.1) benign(0.002) TCGA-BR-4201-01 14 55848756 55848756 C T ATG14 Nonsense_Mutation p.W267* 0.19 TCGA-BR-4201-01 14 57960374 57960375 - T C14orf105 Frame_Shift_Ins p.N20Kfs*36 0.16 TCGA-BR-4201-01 14 58563560 58563560 G T C14orf37 Silent p.T657T 0.16 TCGA-BR-4201-01 14 59014534 59014534 C - KIAA0586 Frame_Shift_Del p.C1594Afs*37 0.13 TCGA-BR-4201-01 14 59108339 59108339 G T DACT1 Nonsense_Mutation p.G170* 0.16 TCGA-BR-4201-01 14 61201664 61201667 CACT - MNAT1 Frame_Shift_Del p.T29Sfs*6 0.18 TCGA-BR-4201-01 14 64692233 64692233 C - SYNE2 Frame_Shift_Del p.T6907Hfs*29 0.20 TCGA-BR-4201-01 14 65053973 65053973 A G PPP1R36 Missense_Mutation p.E258G 0.19 tolerated(0.26) possibly_damaging(0.576) TCGA-BR-4201-01 14 66082939 66082939 G A FUT8 Silent p.K110K 0.19 TCGA-BR-4201-01 14 67431987 67431987 C T GPHN Missense_Mutation p.S303L 0.13 tolerated(0.1) probably_damaging(0.93) TCGA-BR-4201-01 14 67576927 67576927 A G GPHN Missense_Mutation p.D455G 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-BR-4201-01 14 71209080 71209080 T C MAP3K9 Missense_Mutation p.S519G 0.15 deleterious(0) benign(0.002) TCGA-BR-4201-01 14 74973465 74973465 A G LTBP2 Silent p.D1323D 0.14 TCGA-BR-4201-01 14 75022341 75022341 G T LTBP2 Missense_Mutation p.R296S 0.22 deleterious(0) benign(0.274) TCGA-BR-4201-01 14 77255395 77255395 C T ANGEL1 3'UTR 0.21 TCGA-BR-4201-01 14 77895366 77895366 G A VIPAS39 Missense_Mutation p.H447Y 0.17 deleterious(0.04) probably_damaging(0.98) TCGA-BR-4201-01 14 90759058 90759059 CA - NRDE2 Nonsense_Mutation p.C608* 0.24 TCGA-BR-4201-01 14 91942843 91942843 G A SMEK1 Missense_Mutation p.A340V 0.19 tolerated(0.19) probably_damaging(0.972) TCGA-BR-4201-01 14 93273171 93273171 C - GOLGA5 Frame_Shift_Del p.P213Qfs*22 0.19 TCGA-BR-4201-01 14 93299632 93299632 G A GOLGA5 Missense_Mutation p.A629T 0.16 tolerated(0.28) benign(0.025) TCGA-BR-4201-01 14 93709015 93709015 T - BTBD7 Frame_Shift_Del p.K1001Nfs*60 0.20 TCGA-BR-4201-01 14 93760502 93760502 A - BTBD7 Frame_Shift_Del p.R289Efs*19 0.14 TCGA-BR-4201-01 14 94510971 94510971 G A OTUB2 Missense_Mutation p.V115M 0.14 tolerated(0.14) possibly_damaging(0.755) TCGA-BR-4201-01 14 95029814 95029814 C T SERPINA4 5'UTR 0.27 TCGA-BR-4201-01 14 97326912 97326912 T C VRK1 Missense_Mutation p.M303T 0.14 deleterious(0) possibly_damaging(0.775) TCGA-BR-4201-01 15 100821558 100821558 C T ADAMTS17 Missense_Mutation p.R222Q 0.21 tolerated(0.18) probably_damaging(0.99) TCGA-BR-4201-01 15 101170100 101170100 A G ASB7 Missense_Mutation p.R224G 0.20 tolerated(0.07) benign(0.308) TCGA-BR-4201-01 15 101528988 101528988 C T LRRK1 Missense_Mutation p.R195C 0.12 deleterious(0.02) possibly_damaging(0.776) TCGA-BR-4201-01 15 22955256 22955256 C T CYFIP1 Silent p.R550R 0.29 TCGA-BR-4201-01 15 23811639 23811639 T C MKRN3 Missense_Mutation p.V237A 0.14 tolerated(0.2) benign(0.005) TCGA-BR-4201-01 15 23889460 23889460 G A MAGEL2 Missense_Mutation p.R541W 0.19 tolerated(0.06) possibly_damaging(0.908) TCGA-BR-4201-01 15 25222053 25222053 A G SNRPN Silent p.G99G 0.13 TCGA-BR-4201-01 15 25456859 25456859 C - SNORD115-22 3'Flank 0.16 TCGA-BR-4201-01 15 25463746 25463747 - G SNORD115-27 5'Flank 0.20 TCGA-BR-4201-01 15 28357109 28357109 G A HERC2 Missense_Mutation p.P4769S 0.16 probably_damaging(1) TCGA-BR-4201-01 15 28366563 28366563 G A HERC2 Missense_Mutation p.R4401W 0.11 probably_damaging(0.999) TCGA-BR-4201-01 15 28538035 28538035 T C HERC2 Silent p.P107P 0.12 TCGA-BR-4201-01 15 33066462 33066462 C T FMN1 3'UTR 0.33 TCGA-BR-4201-01 15 33192305 33192305 C T FMN1 Missense_Mutation p.V954M 0.20 deleterious(0) probably_damaging(0.994) TCGA-BR-4201-01 15 34159951 34159952 - C AVEN Frame_Shift_Ins p.P240Afs*4 0.22 TCGA-BR-4201-01 15 34396276 34396276 C T PGBD4 Missense_Mutation p.T515I 0.15 tolerated(0.12) benign(0.018) TCGA-BR-4201-01 15 35529571 35529571 G A ANP32AP1 RNA 0.23 TCGA-BR-4201-01 15 38614463 38614463 A - SPRED1 Frame_Shift_Del p.D79Tfs*42 0.12 TCGA-BR-4201-01 15 38641674 38641674 G A SPRED1 Missense_Mutation p.V212I 0.15 tolerated(0.59) benign(0.001) TCGA-BR-4201-01 15 40758302 40758302 C T BAHD1 Silent p.H772H 0.12 TCGA-BR-4201-01 15 41021004 41021004 C T RAD51 Missense_Mutation p.A210V 0.07 deleterious(0.02) benign(0.279) TCGA-BR-4201-01 15 41820101 41820101 G A RPAP1 Missense_Mutation p.A462V 0.26 deleterious(0) probably_damaging(0.992) TCGA-BR-4201-01 15 42005394 42005395 - C MGA Frame_Shift_Ins p.P1046Sfs*5 0.21 TCGA-BR-4201-01 15 42743354 42743354 C T ZNF106 Nonsense_Mutation p.W349* 0.17 TCGA-BR-4201-01 15 43513034 43513034 C T EPB42 5'UTR 0.26 TCGA-BR-4201-01 15 43533132 43533132 C T TGM5 Missense_Mutation p.D307N 0.16 tolerated(0.54) probably_damaging(1) TCGA-BR-4201-01 15 43677988 43677988 G A TUBGCP4 Splice_Site p.X242_splice 0.22 TCGA-BR-4201-01 15 43707815 43707815 C T TP53BP1 Missense_Mutation p.R1689H 0.17 deleterious(0) probably_damaging(1) TCGA-BR-4201-01 15 44951445 44951445 A G SPG11 Missense_Mutation p.F167L 0.24 tolerated(1) benign(0.002) TCGA-BR-4201-01 15 45387642 45387642 C T DUOX2 Missense_Mutation p.C1411Y 0.14 deleterious(0) probably_damaging(0.999) TCGA-BR-4201-01 15 45556197 45556197 G A SLC28A2 Missense_Mutation p.A189T 0.17 tolerated(0.28) possibly_damaging(0.744) TCGA-BR-4201-01 15 49148280 49148282 TCT - SHC4 In_Frame_Del p.E370del 0.20 TCGA-BR-4201-01 15 50534934 50534934 C T HDC Silent p.T504T 0.34 TCGA-BR-4201-01 15 50878623 50878623 A G TRPM7 Silent p.C1484C 0.17 TCGA-BR-4201-01 15 53049694 53049695 - A ONECUT1 3'UTR 0.14 TCGA-BR-4201-01 15 56719824 56719824 A - TEX9 Frame_Shift_Del p.I331Lfs*4 0.14 TCGA-BR-4201-01 15 62147068 62147068 A G VPS13C Splice_Site p.X3720_splice 0.11 TCGA-BR-4201-01 15 62182513 62182514 - A VPS13C Frame_Shift_Ins p.T3065Hfs*3 0.17 TCGA-BR-4201-01 15 63063176 63063176 C T TLN2 Missense_Mutation p.A1737V 0.21 tolerated(0.45) benign(0.003) TCGA-BR-4201-01 15 63824853 63824853 G A USP3 Silent p.R33R 0.15 TCGA-BR-4201-01 15 63881043 63881043 A - USP3 Intron 0.23 TCGA-BR-4201-01 15 63881145 63881145 T C USP3 Silent p.P444P 0.18 TCGA-BR-4201-01 15 63889654 63889656 CTC - FBXL22 In_Frame_Del p.S22del 0.42 TCGA-BR-4201-01 15 63904654 63904654 C A HERC1 Missense_Mutation p.E4732D 0.15 probably_damaging(0.996) TCGA-BR-4201-01 15 64005567 64005567 C - HERC1 Frame_Shift_Del p.G1483Vfs*4 0.18 TCGA-BR-4201-01 15 64067377 64067377 C T HERC1 Missense_Mutation p.R149H 0.14 possibly_damaging(0.883) TCGA-BR-4201-01 15 65945038 65945038 G A SLC24A1 Missense_Mutation p.G981D 0.22 probably_damaging(0.998) TCGA-BR-4201-01 15 68661610 68661610 G A ITGA11 Silent p.G59G 0.21 TCGA-BR-4201-01 15 76019571 76019571 C A ODF3L1 Missense_Mutation p.P172H 0.22 deleterious(0) probably_damaging(0.997) TCGA-BR-4201-01 15 76726491 76726492 - T SCAPER Frame_Shift_Ins p.I1080Nfs*14 0.20 TCGA-BR-4201-01 15 78398176 78398176 G A CIB2 Silent p.C149C 0.26 TCGA-BR-4201-01 15 78807371 78807371 C A HYKK Silent p.P133P 0.27 TCGA-BR-4201-01 15 79296457 79296457 G - RASGRF1 Frame_Shift_Del p.K729Sfs*31 0.25 TCGA-BR-4201-01 15 80872883 80872883 C T ARNT2 Missense_Mutation p.P582L 0.11 tolerated(0.14) benign(0.2) TCGA-BR-4201-01 15 83451613 83451613 A G FSD2 Silent p.D300D 0.19 TCGA-BR-4201-01 15 85327240 85327240 C G ZNF592 Missense_Mutation p.A445G 0.20 tolerated(0.39) benign(0.02) TCGA-BR-4201-01 15 89738497 89738497 G T ABHD2 Missense_Mutation p.G374V 0.11 deleterious(0) probably_damaging(1) TCGA-BR-4201-01 15 90167247 90167247 C T TICRR Missense_Mutation p.P1236S 0.09 tolerated(0.49) benign(0.015) TCGA-BR-4201-01 15 91295078 91295078 A G BLM Silent p.P287P 0.20 TCGA-BR-4201-01 16 10788514 10788514 G A TEKT5 Missense_Mutation p.R73W 0.11 deleterious(0) possibly_damaging(0.776) TCGA-BR-4201-01 16 11000846 11000846 C T CIITA Silent p.D499D 0.16 TCGA-BR-4201-01 16 11137920 11137920 T - CLEC16A Frame_Shift_Del p.Y604Ifs*18 0.15 TCGA-BR-4201-01 16 113713 113713 G A RHBDF1 Missense_Mutation p.R112C 0.41 deleterious(0) probably_damaging(0.977) TCGA-BR-4201-01 16 1250513 1250513 C T CACNA1H Missense_Mutation p.P354L 0.20 deleterious(0) probably_damaging(1) TCGA-BR-4201-01 16 1262117 1262117 C T CACNA1H Missense_Mutation p.R1580C 0.21 deleterious(0.01) possibly_damaging(0.891) TCGA-BR-4201-01 16 15131990 15131990 T - NTAN1 Frame_Shift_Del p.K277Nfs*83 0.19 TCGA-BR-4201-01 16 1825707 1825707 G - EME2 Intron 0.24 TCGA-BR-4201-01 16 18875108 18875108 C T SMG1 Missense_Mutation p.G1187R 0.16 tolerated(0.36) benign(0.36) TCGA-BR-4201-01 16 19451526 19451526 T G TMC5 Missense_Mutation p.S56A 0.24 deleterious_low_confidence(0.01) benign(0.214) TCGA-BR-4201-01 16 19498632 19498632 G A TMC5 Missense_Mutation p.A853T 0.23 tolerated(0.13) probably_damaging(0.979) TCGA-BR-4201-01 16 20043576 20043576 G A GPR139 Silent p.H181H 0.29 TCGA-BR-4201-01 16 20844362 20844363 - T AC004381.6 Frame_Shift_Ins p.L436Ffs*9 0.08 TCGA-BR-4201-01 16 22163922 22163922 C T VWA3A Silent p.H1124H 0.17 TCGA-BR-4201-01 16 2282576 2282576 G A E4F1 Silent p.T243T 0.27 TCGA-BR-4201-01 16 2333210 2333210 C T ABCA3 Missense_Mutation p.A1338T 0.24 tolerated(0.24) benign(0.001) TCGA-BR-4201-01 16 23382745 23382745 G A SCNN1B Missense_Mutation p.A336T 0.32 tolerated(0.15) probably_damaging(0.997) TCGA-BR-4201-01 16 23494294 23494294 G T GGA2 Missense_Mutation p.P277H 0.18 deleterious(0) probably_damaging(1) TCGA-BR-4201-01 16 24946893 24946893 C T ARHGAP17 Missense_Mutation p.A598T 0.12 tolerated_low_confidence(0.53) benign(0.002) TCGA-BR-4201-01 16 27367135 27367135 G - IL4R Frame_Shift_Del p.E227Sfs*51 0.11 TCGA-BR-4201-01 16 27481632 27481632 G A GTF3C1 Silent p.D1537D 0.18 TCGA-BR-4201-01 16 27489822 27489822 T - GTF3C1 Frame_Shift_Del p.D1410Ifs*23 0.20 TCGA-BR-4201-01 16 27585252 27585252 G A KIAA0556 Nonsense_Mutation p.W13* 0.15 TCGA-BR-4201-01 16 2764112 2764112 C T PRSS27 Silent p.T154T 0.25 TCGA-BR-4201-01 16 2812472 2812472 G A SRRM2 Missense_Mutation p.R648H 0.21 unknown(0) TCGA-BR-4201-01 16 30199821 30199821 G A CORO1A Missense_Mutation p.R402Q 0.24 tolerated(0.14) benign(0.058) TCGA-BR-4201-01 16 3073266 3073266 G - HCFC1R1 Frame_Shift_Del p.M84* 0.26 TCGA-BR-4201-01 16 30779603 30779605 GAA - RNF40 In_Frame_Del p.K579del 0.17 TCGA-BR-4201-01 16 31089288 31089288 C T ZNF646 Missense_Mutation p.P548L 0.11 tolerated(0.76) benign(0.002) TCGA-BR-4201-01 16 31154679 31154679 C T PRSS36 Missense_Mutation p.A362T 0.12 deleterious(0) probably_damaging(1) TCGA-BR-4201-01 16 31371370 31371370 G A ITGAX Missense_Mutation p.A231T 0.15 deleterious(0) probably_damaging(0.996) TCGA-BR-4201-01 16 3544554 3544554 G A C16orf90 Nonsense_Mutation p.R124* 0.42 TCGA-BR-4201-01 16 3632513 3632513 G A SLX4 Missense_Mutation p.R1779W 0.13 deleterious(0) benign(0.39) TCGA-BR-4201-01 16 3900561 3900561 C T CREBBP Missense_Mutation p.A179T 0.18 possibly_damaging(0.517) TCGA-BR-4201-01 16 4016953 4016953 G A ADCY9 Missense_Mutation p.P962L 0.15 tolerated(0.71) benign(0) TCGA-BR-4201-01 16 48155695 48155695 C T ABCC12 Silent p.Q548Q 0.22 TCGA-BR-4201-01 16 52473718 52473718 C T TOX3 Missense_Mutation p.A384T 0.21 tolerated_low_confidence(0.05) benign(0.307) TCGA-BR-4201-01 16 54317634 54317634 G A IRX3 Silent p.D490D 0.21 TCGA-BR-4201-01 16 55518003 55518003 C T MMP2 Silent p.S152S 0.30 TCGA-BR-4201-01 16 56623933 56623933 C T MT3 Intron 0.19 TCGA-BR-4201-01 16 61687601 61687602 GG T CDH8 Frame_Shift_Del p.D770Efs*35 0.16 TCGA-BR-4201-01 16 64984769 64984769 C T CDH11 Missense_Mutation p.G599R 0.23 deleterious(0.02) benign(0.326) TCGA-BR-4201-01 16 66947046 66947046 G A CDH16 Missense_Mutation p.L348F 0.18 deleterious(0.04) benign(0.25) TCGA-BR-4201-01 16 67516943 67516943 A C AGRP Silent p.A67A 0.21 TCGA-BR-4201-01 16 67691889 67691889 C A ACD Missense_Mutation p.W488C 0.17 deleterious(0) possibly_damaging(0.885) TCGA-BR-4201-01 16 67860079 67860079 G A TSNAXIP1 Missense_Mutation p.R336H 0.43 deleterious(0) probably_damaging(0.999) TCGA-BR-4201-01 16 68012210 68012210 C - DPEP3 Frame_Shift_Del p.V241Cfs*4 0.17 TCGA-BR-4201-01 16 68026860 68026860 C T DPEP2 Missense_Mutation p.V86M 0.33 deleterious(0) probably_damaging(0.984) TCGA-BR-4201-01 16 69143549 69143549 G A HAS3 Missense_Mutation p.R84Q 0.13 tolerated(0.49) benign(0.01) TCGA-BR-4201-01 16 69964118 69964118 C T WWP2 Missense_Mutation p.R468C 0.27 deleterious(0) probably_damaging(1) TCGA-BR-4201-01 16 70557297 70557297 G A COG4 Silent p.Y50Y 0.18 TCGA-BR-4201-01 16 709102 709102 G - WDR90 Frame_Shift_Del p.A1011Pfs*100 0.27 TCGA-BR-4201-01 16 72828552 72828552 C T ZFHX3 Missense_Mutation p.E2677K 0.15 unknown(0) TCGA-BR-4201-01 16 72831388 72831388 C T ZFHX3 Silent p.Q1731Q 0.33 TCGA-BR-4201-01 16 74384587 74384587 T - RP11-252A24.2 RNA 0.14 TCGA-BR-4201-01 16 74496466 74496466 C T GLG1 Missense_Mutation p.G952S 0.25 tolerated(0.74) benign(0.004) TCGA-BR-4201-01 16 74729299 74729299 C T MLKL Silent p.E119E 0.17 TCGA-BR-4201-01 16 76587778 76587778 T C RP11-58C22.1 Missense_Mutation p.I44T 0.19 tolerated(0.09) benign(0.009) TCGA-BR-4201-01 16 77356319 77356319 A T ADAMTS18 Missense_Mutation p.F693I 0.13 deleterious(0) probably_damaging(0.992) TCGA-BR-4201-01 16 81320986 81320986 G A BCMO1 Silent p.A463A 0.23 TCGA-BR-4201-01 16 83065685 83065685 C T CDH13 Silent p.N123N 0.24 TCGA-BR-4201-01 16 88694379 88694379 C T ZC3H18 Missense_Mutation p.S774L 0.22 tolerated_low_confidence(0.2) benign(0.426) TCGA-BR-4201-01 16 88876887 88876887 G A APRT Missense_Mutation p.R89W 0.23 deleterious(0) probably_damaging(0.916) TCGA-BR-4201-01 16 89614458 89614458 C T SPG7 Missense_Mutation p.R534W 0.28 deleterious(0) probably_damaging(1) TCGA-BR-4201-01 16 90038269 90038269 G A CENPBD1 Missense_Mutation p.A21V 0.17 tolerated(0.21) benign(0.016) TCGA-BR-4201-01 16 9857426 9857426 G A GRIN2A Silent p.Y1325Y 0.13 TCGA-BR-4201-01 17 10231407 10231407 G T MYH13 Missense_Mutation p.R823S 0.11 deleterious(0.01) benign(0.373) TCGA-BR-4201-01 17 10542988 10542988 C T MYH3 Silent p.T938T 0.18 TCGA-BR-4201-01 17 11711080 11711081 - G DNAH9 Frame_Shift_Ins p.N2820Kfs*65 0.18 TCGA-BR-4201-01 17 11778363 11778363 G A DNAH9 Missense_Mutation p.R3447H 0.24 probably_damaging(0.963) TCGA-BR-4201-01 17 11806149 11806149 G T DNAH9 Missense_Mutation p.Q3840H 0.17 probably_damaging(0.971) TCGA-BR-4201-01 17 12661453 12661453 T C MYOCD Missense_Mutation p.S752P 0.12 tolerated(0.38) probably_damaging(0.999) TCGA-BR-4201-01 17 1520058 1520058 C T SLC43A2 Missense_Mutation p.V56I 0.21 tolerated(0.75) benign(0.001) TCGA-BR-4201-01 17 1640830 1640830 G A WDR81 Missense_Mutation p.V1893I 0.22 tolerated(0.2) benign(0.03) TCGA-BR-4201-01 17 1679914 1679914 G A SERPINF1 Missense_Mutation p.S292N 0.14 tolerated(0.07) possibly_damaging(0.816) TCGA-BR-4201-01 17 17075070 17075070 G A MPRIP Silent p.T734T 0.13 TCGA-BR-4201-01 17 17698482 17698482 C T RAI1 Silent p.S740S 0.18 TCGA-BR-4201-01 17 17720322 17720322 C T SREBF1 Missense_Mutation p.A609T 0.16 deleterious(0.04) possibly_damaging(0.815) TCGA-BR-4201-01 17 17766046 17766046 T C TOM1L2 Missense_Mutation p.T401A 0.19 tolerated(0.39) benign(0.001) TCGA-BR-4201-01 17 18874437 18874437 A T SLC5A10 Missense_Mutation p.H251L 0.23 deleterious(0) probably_damaging(0.999) TCGA-BR-4201-01 17 19568354 19568354 G T ALDH3A2 Nonsense_Mutation p.G401* 0.22 TCGA-BR-4201-01 17 20407328 20407328 C T RP11-434D2.7 3'Flank 0.23 TCGA-BR-4201-01 17 21201726 21201726 A G MAP2K3 Silent p.G17G 0.11 TCGA-BR-4201-01 17 2203399 2203399 T - SMG6 Frame_Shift_Del p.G217Efs*10 0.09 TCGA-BR-4201-01 17 26943183 26943183 C T KIAA0100 Silent p.E2107E 0.08 TCGA-BR-4201-01 17 27042914 27042914 C T RAB34 Missense_Mutation p.C130Y 0.08 deleterious(0.03) probably_damaging(0.987) TCGA-BR-4201-01 17 27251130 27251130 G A PHF12 Missense_Mutation p.A171V 0.20 deleterious(0.01) benign(0.374) TCGA-BR-4201-01 17 28003848 28003848 G A SSH2 Nonsense_Mutation p.Q175* 0.26 TCGA-BR-4201-01 17 2867323 2867323 G - RAP1GAP2 Frame_Shift_Del p.G152Vfs*16 0.18 TCGA-BR-4201-01 17 29164252 29164252 A - ATAD5 Frame_Shift_Del p.K667Nfs*40 0.19 TCGA-BR-4201-01 17 29196630 29196630 T - ATAD5 Frame_Shift_Del p.F1193Lfs*6 0.18 TCGA-BR-4201-01 17 30362634 30362634 C T LRRC37B Missense_Mutation p.T700M 0.19 tolerated(1) benign(0) TCGA-BR-4201-01 17 34257080 34257080 C A RDM1 Missense_Mutation p.K92N 0.20 deleterious(0) probably_damaging(0.936) TCGA-BR-4201-01 17 34862341 34862341 G - MYO19 Frame_Shift_Del p.P584Lfs*9 0.13 TCGA-BR-4201-01 17 36483525 36483525 C T GPR179 Missense_Mutation p.R1976H 0.18 tolerated(0.61) benign(0) TCGA-BR-4201-01 17 3655092 3655092 G A ITGAE Missense_Mutation p.A582V 0.23 deleterious(0.01) probably_damaging(0.951) TCGA-BR-4201-01 17 37188048 37188048 C A CTD-2206N4.2 5'Flank 0.10 TCGA-BR-4201-01 17 37673788 37673788 G A CDK12 Missense_Mutation p.R981H 0.15 probably_damaging(0.999) TCGA-BR-4201-01 17 38024801 38024801 G A ZPBP2 Splice_Site p.X18_splice 0.13 TCGA-BR-4201-01 17 38282534 38282535 AG - MSL1 Frame_Shift_Del p.E29Gfs*6 0.14 TCGA-BR-4201-01 17 38955915 38955915 G A KRT28 Silent p.S77S 0.15 TCGA-BR-4201-01 17 39680724 39680724 G A KRT19 Silent p.T243T 0.10 TCGA-BR-4201-01 17 40028081 40028082 - C ACLY Frame_Shift_Ins p.D933Gfs*16 0.26 TCGA-BR-4201-01 17 40362447 40362447 T - STAT5B Frame_Shift_Del p.K583Nfs*16 0.21 TCGA-BR-4201-01 17 4060253 4060253 C - CYB5D2 Frame_Shift_Del p.P226Lfs*31 0.23 TCGA-BR-4201-01 17 40729286 40729286 T C PSMC3IP Missense_Mutation p.Q57R 0.10 tolerated(0.12) benign(0.026) TCGA-BR-4201-01 17 40818663 40818663 C T TUBG2 Missense_Mutation p.R401W 0.21 deleterious(0.01) benign(0.055) TCGA-BR-4201-01 17 41570275 41570275 C T DHX8 Missense_Mutation p.R244W 0.16 deleterious(0.01) benign(0.002) TCGA-BR-4201-01 17 41879176 41879176 C T MPP3 Missense_Mutation p.A551T 0.21 tolerated(0.36) benign(0.005) TCGA-BR-4201-01 17 42156018 42156018 C T HDAC5 Missense_Mutation p.C1061Y 0.22 deleterious(0.01) possibly_damaging(0.739) TCGA-BR-4201-01 17 42390862 42390862 G A RUNDC3A Missense_Mutation p.R150Q 0.16 tolerated(0.07) probably_damaging(0.996) TCGA-BR-4201-01 17 42429110 42429110 G A GRN Missense_Mutation p.D376N 0.12 tolerated(1) benign(0) TCGA-BR-4201-01 17 42635531 42635531 G A FZD2 Missense_Mutation p.G159R 0.20 tolerated(0.33) benign(0.071) TCGA-BR-4201-01 17 44116010 44116010 G A KANSL1 Missense_Mutation p.A812V 0.19 tolerated(0.26) benign(0.06) TCGA-BR-4201-01 17 4446359 4446359 T G MYBBP1A Missense_Mutation p.Q914P 0.15 tolerated(0.06) benign(0.099) TCGA-BR-4201-01 17 4448439 4448439 C T MYBBP1A Missense_Mutation p.S731N 0.17 tolerated(0.45) benign(0.002) TCGA-BR-4201-01 17 4594694 4594694 C T PELP1 Missense_Mutation p.R98H 0.12 benign(0.263) TCGA-BR-4201-01 17 46135788 46135788 G - NFE2L1 Frame_Shift_Del p.G370Afs*44 0.20 TCGA-BR-4201-01 17 46136299 46136299 G A NFE2L1 Missense_Mutation p.E539K 0.37 deleterious(0.02) probably_damaging(0.998) TCGA-BR-4201-01 17 4685809 4685809 G A TM4SF5 Silent p.S90S 0.20 TCGA-BR-4201-01 17 4804924 4804924 C T CHRNE Intron 0.27 TCGA-BR-4201-01 17 4804936 4804936 C T C17orf107 3'UTR 0.31 TCGA-BR-4201-01 17 4848022 4848022 G A RNF167 Missense_Mutation p.R255H 0.22 deleterious(0.04) benign(0.009) TCGA-BR-4201-01 17 48545752 48545752 C - CHAD Frame_Shift_Del p.L142Cfs*42 0.17 TCGA-BR-4201-01 17 5072211 5072211 G - USP6 Frame_Shift_Del p.D1128Mfs*13 0.11 TCGA-BR-4201-01 17 54428181 54428181 A - ANKFN1 Frame_Shift_Del p.K86Nfs*22 0.19 TCGA-BR-4201-01 17 55083545 55083545 C T SCPEP1 Silent p.D436D 0.10 TCGA-BR-4201-01 17 56435161 56435161 C - RNF43 Frame_Shift_Del p.G659Vfs*41 0.24 TCGA-BR-4201-01 17 57297936 57297936 C T GDPD1 5'UTR 0.12 TCGA-BR-4201-01 17 57744280 57744280 T C CLTC Silent p.H690H 0.19 TCGA-BR-4201-01 17 57771129 57771129 C A CLTC Silent p.A1648A 0.18 TCGA-BR-4201-01 17 57889086 57889087 - T VMP1 Frame_Shift_Ins p.W286Lfs*84 0.13 TCGA-BR-4201-01 17 58134524 58134524 C T HEATR6 Missense_Mutation p.R655Q 0.18 tolerated(0.34) benign(0.002) TCGA-BR-4201-01 17 58147131 58147131 C T HEATR6 Missense_Mutation p.D294N 0.16 deleterious(0) probably_damaging(0.997) TCGA-BR-4201-01 17 59479234 59479234 G - TBX2 Frame_Shift_Del p.E197Sfs*13 0.17 TCGA-BR-4201-01 17 60344534 60344534 G A TBC1D3P2 RNA 0.18 TCGA-BR-4201-01 17 61497887 61497887 G A TANC2 Missense_Mutation p.R1515H 0.13 tolerated_low_confidence(0.18) possibly_damaging(0.572) TCGA-BR-4201-01 17 61759155 61759155 C - MAP3K3 Frame_Shift_Del p.P210Lfs*39 0.17 TCGA-BR-4201-01 17 61898993 61898993 G A FTSJ3 Missense_Mutation p.A536V 0.18 tolerated(0.18) benign(0.02) TCGA-BR-4201-01 17 61912092 61912092 C T SMARCD2 Silent p.L264L 0.16 TCGA-BR-4201-01 17 62020407 62020407 T C SCN4A Missense_Mutation p.D1356G 0.16 deleterious(0) probably_damaging(0.999) TCGA-BR-4201-01 17 64059082 64059082 T - CEP112 Frame_Shift_Del p.K358Sfs*6 0.17 TCGA-BR-4201-01 17 6483001 6483001 G A KIAA0753 3'UTR 0.17 TCGA-BR-4201-01 17 64880822 64880822 C T CACNG5 Intron 0.23 TCGA-BR-4201-01 17 650298 650298 C - GEMIN4 Frame_Shift_Del p.E329Rfs*24 0.35 TCGA-BR-4201-01 17 66303763 66303763 C T ARSG Silent p.A43A 0.17 TCGA-BR-4201-01 17 66937011 66937011 G A ABCA8 Silent p.D63D 0.10 TCGA-BR-4201-01 17 66982353 66982353 G A ABCA9 Missense_Mutation p.A1387V 0.14 deleterious(0.01) probably_damaging(0.973) TCGA-BR-4201-01 17 67016664 67016664 A G ABCA9 Missense_Mutation p.L822P 0.20 tolerated(0.24) benign(0.009) TCGA-BR-4201-01 17 67039677 67039677 G A ABCA9 Silent p.Y251Y 0.16 TCGA-BR-4201-01 17 6927588 6927588 C T BCL6B Silent p.H122H 0.16 TCGA-BR-4201-01 17 71282053 71282053 G T CDC42EP4 Missense_Mutation p.A196D 0.15 tolerated(0.18) possibly_damaging(0.535) TCGA-BR-4201-01 17 7211859 7211859 A G EIF5A Intron 0.23 TCGA-BR-4201-01 17 72519669 72519669 C T CD300LB Intron 0.19 TCGA-BR-4201-01 17 7252342 7252342 G A ACAP1 Silent p.L569L 0.09 TCGA-BR-4201-01 17 725610 725610 C T NXN Missense_Mutation p.V234I 0.19 deleterious(0.01) benign(0.322) TCGA-BR-4201-01 17 73259534 73259534 C A MRPS7 Missense_Mutation p.N151K 0.16 deleterious(0) probably_damaging(0.98) TCGA-BR-4201-01 17 7329690 7329690 G A C17orf74 Missense_Mutation p.R127H 0.20 tolerated(0.36) probably_damaging(0.923) TCGA-BR-4201-01 17 7344777 7344778 TC - FGF11 Intron 0.13 TCGA-BR-4201-01 17 7369348 7369348 C T ZBTB4 Missense_Mutation p.R258Q 0.40 possibly_damaging(0.602) TCGA-BR-4201-01 17 73908365 73908365 T C FBF1 Missense_Mutation p.T1076A 0.27 tolerated(0.74) benign(0.001) TCGA-BR-4201-01 17 74288203 74288203 G A QRICH2 Missense_Mutation p.R703C 0.16 tolerated(0.18) possibly_damaging(0.502) TCGA-BR-4201-01 17 74470845 74470845 G T RHBDF2 Silent p.I452I 0.16 TCGA-BR-4201-01 17 74527577 74527577 C T CYGB Missense_Mutation p.A114T 0.27 deleterious(0.01) probably_damaging(1) TCGA-BR-4201-01 17 7496122 7496122 G - FXR2 Frame_Shift_Del p.P540Qfs*32 0.50 TCGA-BR-4201-01 17 75212636 75212636 G A SEC14L1 Missense_Mutation p.R717Q 0.18 tolerated_low_confidence(0.21) benign(0) TCGA-BR-4201-01 17 7612532 7612532 C - EFNB3 Frame_Shift_Del p.P222Lfs*72 0.18 TCGA-BR-4201-01 17 77082376 77082376 G T ENGASE Missense_Mutation p.R726L 0.12 tolerated(0.39) benign(0) TCGA-BR-4201-01 17 7750871 7750871 C T KDM6B Missense_Mutation p.A422V 0.21 unknown(0) TCGA-BR-4201-01 17 78176086 78176086 C T CARD14 Nonsense_Mutation p.Q696* 0.17 TCGA-BR-4201-01 17 78327287 78327287 G A RNF213 Intron 0.25 TCGA-BR-4201-01 17 78354648 78354648 C T RNF213 Missense_Mutation p.T4553M 0.19 probably_damaging(0.995) TCGA-BR-4201-01 17 78599546 78599546 C A RPTOR Missense_Mutation p.P73H 0.09 deleterious(0) probably_damaging(0.998) TCGA-BR-4201-01 17 7999976 7999976 G T ALOXE3 Missense_Mutation p.P834H 0.19 deleterious(0) probably_damaging(1) TCGA-BR-4201-01 17 80011774 80011774 G A GPS1 Missense_Mutation p.G93S 0.21 deleterious(0.04) probably_damaging(0.987) TCGA-BR-4201-01 17 80019841 80019841 G A DUS1L Missense_Mutation p.R177C 0.21 deleterious(0.01) probably_damaging(0.978) TCGA-BR-4201-01 17 80788993 80788993 G A ZNF750 Silent p.Y446Y 0.21 TCGA-BR-4201-01 17 8158378 8158378 C T PFAS Silent p.I104I 0.13 TCGA-BR-4201-01 17 8272949 8272949 C T KRBA2 Missense_Mutation p.V328I 0.15 tolerated(0.9) benign(0.001) TCGA-BR-4201-01 17 8396161 8396161 G A MYH10 Missense_Mutation p.T1464M 0.21 benign(0.003) TCGA-BR-4201-01 17 9479985 9479985 A C WDR16 5'UTR 0.17 TCGA-BR-4201-01 17 9615374 9615374 T G USP43 Missense_Mutation p.S754A 0.28 deleterious(0.03) benign(0.216) TCGA-BR-4201-01 17 9674812 9674812 T C DHRS7C Missense_Mutation p.E311G 0.14 deleterious(0) benign(0.33) TCGA-BR-4201-01 18 13621228 13621228 C T LDLRAD4 Silent p.N98N 0.12 TCGA-BR-4201-01 18 14542858 14542858 G A POTEC Silent p.S96S 0.13 TCGA-BR-4201-01 18 21495282 21495282 C T LAMA3 Silent p.Y2558Y 0.09 TCGA-BR-4201-01 18 2706440 2706440 A - SMCHD1 Frame_Shift_Del p.K680Nfs*3 0.21 TCGA-BR-4201-01 18 31323494 31323494 C T ASXL3 Missense_Mutation p.P1228S 0.11 benign(0.026) TCGA-BR-4201-01 18 31325001 31325001 T A ASXL3 Missense_Mutation p.V1730D 0.22 benign(0.1) TCGA-BR-4201-01 18 31326157 31326157 C T ASXL3 Silent p.F2115F 0.16 TCGA-BR-4201-01 18 3154953 3154953 A - MYOM1 Frame_Shift_Del p.F545Lfs*20 0.11 TCGA-BR-4201-01 18 33234733 33234733 A - GALNT1 Frame_Shift_Del p.K38Rfs*11 0.19 TCGA-BR-4201-01 18 33243635 33243635 G - GALNT1 Frame_Shift_Del p.K63Nfs*13 0.18 TCGA-BR-4201-01 18 34261513 34261513 G T FHOD3 Silent p.R475R 0.17 TCGA-BR-4201-01 18 34376677 34376677 G A TPGS2 3'UTR 0.13 TCGA-BR-4201-01 18 44470593 44470593 T - PIAS2 Frame_Shift_Del p.N150Ifs*17 0.10 TCGA-BR-4201-01 18 50734091 50734091 A - DCC Frame_Shift_Del p.K590Nfs*10 0.10 TCGA-BR-4201-01 18 5291776 5291779 TACT - ZBTB14 Frame_Shift_Del p.K143Ifs*5 0.15 TCGA-BR-4201-01 18 64172527 64172527 A - CDH19 Frame_Shift_Del p.L614* 0.17 TCGA-BR-4201-01 18 67776813 67776813 G A RTTN Missense_Mutation p.A1275V 0.15 deleterious(0.04) probably_damaging(0.99) TCGA-BR-4201-01 18 6942222 6942222 T - LAMA1 Frame_Shift_Del p.K3028Nfs*13 0.16 TCGA-BR-4201-01 18 72343485 72343485 G A ZNF407 Silent p.P170P 0.11 TCGA-BR-4201-01 18 74583706 74583706 A G ZNF236 Missense_Mutation p.T196A 0.17 tolerated(0.16) benign(0.129) TCGA-BR-4201-01 18 74980856 74980856 T C GALR1 Nonstop_Mutation p.*350Rext*? 0.15 TCGA-BR-4201-01 19 10394931 10394931 G A ICAM1 Missense_Mutation p.R287Q 0.21 tolerated(1) benign(0) TCGA-BR-4201-01 19 10468575 10468575 G - TYK2 Frame_Shift_Del p.W778Gfs*14 0.19 TCGA-BR-4201-01 19 10502162 10502162 T C CDC37 3'UTR 0.15 TCGA-BR-4201-01 19 10568738 10568738 G A PDE4A Missense_Mutation p.R354Q 0.23 deleterious(0.02) benign(0.271) TCGA-BR-4201-01 19 11143999 11143999 G A SMARCA4 Missense_Mutation p.G1194R 0.19 probably_damaging(0.978) TCGA-BR-4201-01 19 11312679 11312679 C T DOCK6 Silent p.P1858P 0.22 TCGA-BR-4201-01 19 11312758 11312758 T C DOCK6 Missense_Mutation p.Y1832C 0.11 deleterious(0) probably_damaging(0.993) TCGA-BR-4201-01 19 11530006 11530006 G A RGL3 5'Flank 0.27 TCGA-BR-4201-01 19 12501739 12501739 A G ZNF799 Silent p.L491L 0.14 TCGA-BR-4201-01 19 12984811 12984811 C T MAST1 Silent p.G1280G 0.20 TCGA-BR-4201-01 19 14077273 14077273 A G RFX1 Missense_Mutation p.Y641H 0.13 tolerated(0.14) benign(0.005) TCGA-BR-4201-01 19 15132473 15132473 C T CCDC105 Missense_Mutation p.R363W 0.18 deleterious(0) probably_damaging(0.998) TCGA-BR-4201-01 19 15342161 15342161 C T EPHX3 Missense_Mutation p.V126I 0.20 deleterious(0.01) possibly_damaging(0.897) TCGA-BR-4201-01 19 15364508 15364508 G A BRD4 Intron 0.21 TCGA-BR-4201-01 19 15491400 15491402 CTT - AKAP8L In_Frame_Del p.K520del 0.18 TCGA-BR-4201-01 19 15538021 15538021 G A WIZ Missense_Mutation p.P285S 0.21 tolerated(0.11) possibly_damaging(0.457) TCGA-BR-4201-01 19 16178386 16178386 C T TPM4 5'UTR 0.30 TCGA-BR-4201-01 19 16612314 16612314 C A C19orf44 Silent p.G237G 0.09 TCGA-BR-4201-01 19 16677452 16677452 C T SLC35E1 Missense_Mutation p.R216Q 0.24 tolerated(0.38) benign(0.041) TCGA-BR-4201-01 19 16790890 16790890 G - TMEM38A Frame_Shift_Del p.E75Sfs*3 0.18 TCGA-BR-4201-01 19 17759362 17759362 G A UNC13A Missense_Mutation p.T565I 0.16 deleterious(0) probably_damaging(0.994) TCGA-BR-4201-01 19 17943458 17943458 G A JAK3 Silent p.A850A 0.18 TCGA-BR-4201-01 19 18779089 18779089 G A KLHL26 Silent p.Q294Q 0.16 TCGA-BR-4201-01 19 19165124 19165124 C T ARMC6 Silent p.G339G 0.14 TCGA-BR-4201-01 19 19338279 19338279 C - NCAN Frame_Shift_Del p.W619Gfs*14 0.21 TCGA-BR-4201-01 19 19747568 19747568 G A GMIP Silent p.S425S 0.21 TCGA-BR-4201-01 19 2102224 2102224 G A AP3D1 Missense_Mutation p.T1199M 0.19 deleterious(0.04) possibly_damaging(0.897) TCGA-BR-4201-01 19 2138638 2138638 C T AP3D1 Missense_Mutation p.A58T 0.11 deleterious(0) probably_damaging(1) TCGA-BR-4201-01 19 24102971 24102971 G A ZNF726 Intron 0.18 TCGA-BR-4201-01 19 31039431 31039431 G A ZNF536 Missense_Mutation p.E969K 0.19 tolerated(0.06) benign(0.169) TCGA-BR-4201-01 19 31769889 31769889 G A TSHZ3 Silent p.D270D 0.22 TCGA-BR-4201-01 19 33621034 33621034 A C GPATCH1 Splice_Site p.X922_splice 0.11 TCGA-BR-4201-01 19 33697607 33697607 G A LRP3 Missense_Mutation p.V565M 0.15 deleterious(0) possibly_damaging(0.738) TCGA-BR-4201-01 19 35514416 35514416 C T GRAMD1A Nonsense_Mutation p.Q683* 0.22 TCGA-BR-4201-01 19 36290978 36290978 G A PRODH2 Missense_Mutation p.R525W 0.26 deleterious(0) possibly_damaging(0.855) TCGA-BR-4201-01 19 3648676 3648676 G A PIP5K1C Silent p.R386R 0.24 TCGA-BR-4201-01 19 37879513 37879513 C T ZNF527 Nonsense_Mutation p.Q188* 0.14 TCGA-BR-4201-01 19 38188115 38188115 T - ZNF607 3'UTR 0.27 TCGA-BR-4201-01 19 38673271 38673271 G A SIPA1L3 Missense_Mutation p.V1441I 0.22 tolerated(0.43) possibly_damaging(0.588) TCGA-BR-4201-01 19 38959976 38959976 C T RYR1 Silent p.G1196G 0.15 TCGA-BR-4201-01 19 38976392 38976392 C T RYR1 Silent p.D1699D 0.19 TCGA-BR-4201-01 19 38993326 38993326 G A RYR1 Silent p.A2598A 0.28 TCGA-BR-4201-01 19 40368650 40368650 C T FCGBP Missense_Mutation p.G4233D 0.10 probably_damaging(0.982) TCGA-BR-4201-01 19 40996007 40996007 G A SPTBN4 Missense_Mutation p.R116Q 0.19 deleterious(0) possibly_damaging(0.449) TCGA-BR-4201-01 19 41919965 41919967 CTT - BCKDHA In_Frame_Del p.F130del 0.32 TCGA-BR-4201-01 19 42190985 42190985 G A CEACAM7 Nonsense_Mutation p.R78* 0.16 TCGA-BR-4201-01 19 42797150 42797150 G A CIC Missense_Mutation p.R1171Q 0.18 benign(0.1) TCGA-BR-4201-01 19 42909697 42909697 G A LIPE Silent p.D794D 0.12 TCGA-BR-4201-01 19 43375950 43375950 G A PSG1 Silent p.S226S 0.15 TCGA-BR-4201-01 19 4453928 4453928 C A UBXN6 Missense_Mutation p.Q82H 0.13 deleterious(0.02) benign(0.043) TCGA-BR-4201-01 19 44571321 44571321 A - ZNF223 Frame_Shift_Del p.N449Tfs*21 0.09 TCGA-BR-4201-01 19 45321843 45321843 C T BCAM Silent p.V381V 0.17 TCGA-BR-4201-01 19 46268691 46268691 C - SIX5 3'UTR 0.20 TCGA-BR-4201-01 19 46974273 46974273 A G PNMAL1 Missense_Mutation p.M7T 0.18 deleterious(0.01) benign(0.092) TCGA-BR-4201-01 19 47969003 47969003 A - SLC8A2 Frame_Shift_Del p.S220Pfs*12 0.12 TCGA-BR-4201-01 19 49223911 49223911 T C RASIP1 3'UTR 0.29 TCGA-BR-4201-01 19 49244679 49244679 C - IZUMO1 Frame_Shift_Del p.E271Rfs*8 0.12 TCGA-BR-4201-01 19 49850473 49850473 G - TEAD2 Frame_Shift_Del p.H299Mfs*12 0.37 TCGA-BR-4201-01 19 49950611 49950612 - G PIH1D1 Frame_Shift_Ins p.G199Rfs*4 0.21 TCGA-BR-4201-01 19 50118249 50118249 G A PRR12 Silent p.R1669R 0.12 TCGA-BR-4201-01 19 50123625 50123625 G A PRR12 Silent p.G1838G 0.29 TCGA-BR-4201-01 19 50124783 50124783 C T PRR12 Silent p.D1875D 0.24 TCGA-BR-4201-01 19 5047625 5047625 G A KDM4B Missense_Mutation p.E191K 0.19 probably_damaging(0.999) TCGA-BR-4201-01 19 50482461 50482461 T C VRK3 Missense_Mutation p.T439A 0.14 tolerated(0.16) benign(0.015) TCGA-BR-4201-01 19 50864954 50864954 C T NAPSA Missense_Mutation p.R145Q 0.12 deleterious(0.04) benign(0.218) TCGA-BR-4201-01 19 50926203 50926203 A G SPIB Missense_Mutation p.Y83C 0.17 deleterious(0.01) probably_damaging(0.916) TCGA-BR-4201-01 19 51559804 51559804 G T KLK13 3'UTR 0.21 TCGA-BR-4201-01 19 51883795 51883795 G T LIM2 Missense_Mutation p.L184M 0.17 tolerated(0.06) probably_damaging(0.959) TCGA-BR-4201-01 19 5219994 5219994 G A PTPRS Missense_Mutation p.R1241C 0.13 deleterious(0) possibly_damaging(0.841) TCGA-BR-4201-01 19 5231449 5231449 G - PTPRS Frame_Shift_Del p.P676Rfs*134 0.30 TCGA-BR-4201-01 19 52328045 52328045 G A FPR3 Silent p.T348T 0.13 TCGA-BR-4201-01 19 52471832 52471832 T C ZNF350 Silent p.S79S 0.18 TCGA-BR-4201-01 19 52719049 52719049 G A PPP2R1A Silent p.G275G 0.10 TCGA-BR-4201-01 19 53452941 53452941 T C ZNF816 3'UTR 0.19 TCGA-BR-4201-01 19 53886503 53886503 G A ZNF525 3'UTR 0.08 TCGA-BR-4201-01 19 54080491 54080491 G A ZNF331 Missense_Mutation p.R226H 0.22 tolerated(0.52) possibly_damaging(0.79) TCGA-BR-4201-01 19 54567029 54567029 C T VSTM1 Translation_Start_Site p.M1? 0.15 deleterious_low_confidence(0) benign(0.38) TCGA-BR-4201-01 19 54678002 54678002 C - MBOAT7 Frame_Shift_Del p.R386Gfs*2 0.29 TCGA-BR-4201-01 19 55177749 55177749 C T LILRB4 Silent p.D311D 0.23 TCGA-BR-4201-01 19 55301539 55301539 G A CTB-61M7.1 RNA 0.18 TCGA-BR-4201-01 19 55481397 55481397 C T NLRP2 Missense_Mutation p.A5V 0.13 tolerated(0.28) benign(0.163) TCGA-BR-4201-01 19 57176390 57176390 T C ZNF835 Silent p.R59R 0.18 TCGA-BR-4201-01 19 57286130 57286130 C T ZIM2 Missense_Mutation p.G504S 0.15 tolerated(1) benign(0.1) TCGA-BR-4201-01 19 57765977 57765977 T C ZNF805 Missense_Mutation p.V597A 0.15 tolerated(0.06) benign(0.026) TCGA-BR-4201-01 19 57839233 57839233 T C ZNF543 Silent p.L135L 0.18 TCGA-BR-4201-01 19 57956447 57956447 A G ZNF749 Missense_Mutation p.E644G 0.09 deleterious(0) possibly_damaging(0.858) TCGA-BR-4201-01 19 57985255 57985255 C A ZNF772 Missense_Mutation p.R286I 0.24 deleterious(0) probably_damaging(0.997) TCGA-BR-4201-01 19 58319993 58319993 G T ZNF552 Missense_Mutation p.S213R 0.20 tolerated(0.35) possibly_damaging(0.859) TCGA-BR-4201-01 19 58490096 58490096 G A ZNF606 Missense_Mutation p.P651L 0.10 deleterious(0.03) probably_damaging(1) TCGA-BR-4201-01 19 58564966 58564966 C T ZSCAN1 Silent p.S258S 0.23 TCGA-BR-4201-01 19 58724502 58724502 C T ZNF274 Missense_Mutation p.T651I 0.23 deleterious_low_confidence(0.01) benign(0.308) TCGA-BR-4201-01 19 59028801 59028801 C T ZBTB45 Silent p.V80V 0.21 TCGA-BR-4201-01 19 59028965 59028965 G A ZBTB45 Nonsense_Mutation p.Q26* 0.17 TCGA-BR-4201-01 19 6183243 6183243 C T ACSBG2 Missense_Mutation p.P428S 0.20 deleterious(0.01) probably_damaging(1) TCGA-BR-4201-01 19 6495075 6495075 C T TUBB4A 3'UTR 0.27 TCGA-BR-4201-01 19 6732509 6732509 C T GPR108 Missense_Mutation p.V329I 0.15 tolerated(0.44) benign(0.123) TCGA-BR-4201-01 19 6821674 6821674 C A VAV1 Silent p.A121A 0.14 TCGA-BR-4201-01 19 810550 810550 G A PTBP1 Missense_Mutation p.V491I 0.11 tolerated(0.2) benign(0.002) TCGA-BR-4201-01 19 847857 847857 T C PRTN3 Missense_Mutation p.V220A 0.33 deleterious(0.01) possibly_damaging(0.635) TCGA-BR-4201-01 19 9011368 9011368 T G MUC16 Missense_Mutation p.K12955N 0.23 possibly_damaging(0.859) TCGA-BR-4201-01 19 9087335 9087335 T C MUC16 Missense_Mutation p.T1494A 0.12 unknown(0) TCGA-BR-4201-01 19 9296531 9296531 C T OR7D2 Missense_Mutation p.P25L 0.20 deleterious_low_confidence(0.04) benign(0.082) TCGA-BR-4201-01 19 9965414 9965414 G A OLFM2 Silent p.H271H 0.35 TCGA-BR-4201-01 1 100731927 100731927 C - RTCA 5'UTR 0.19 TCGA-BR-4201-01 1 101339853 101339853 A T EXTL2 Missense_Mutation p.I213N 0.14 deleterious(0.01) probably_damaging(0.962) TCGA-BR-4201-01 1 103345444 103345444 G T COL11A1 Missense_Mutation p.S1690Y 0.08 unknown(0) TCGA-BR-4201-01 1 104122059 104122059 T - AMY2B Frame_Shift_Del p.S493Lfs*22 0.12 TCGA-BR-4201-01 1 10715762 10715762 C T CASZ1 Missense_Mutation p.V537I 0.17 tolerated(0.06) probably_damaging(0.963) TCGA-BR-4201-01 1 108507464 108507464 A G VAV3 Missense_Mutation p.W10R 0.13 deleterious(0) probably_damaging(1) TCGA-BR-4201-01 1 109276020 109276020 C T FNDC7 Missense_Mutation p.T669M 0.21 deleterious(0) probably_damaging(0.97) TCGA-BR-4201-01 1 109766656 109766657 GG - SARS Frame_Shift_Del p.G65Rfs*12 0.17 TCGA-BR-4201-01 1 110766448 110766448 C - KCNC4 Frame_Shift_Del p.R516Gfs*17 0.25 TCGA-BR-4201-01 1 110884339 110884339 A G RBM15 Missense_Mutation p.D771G 0.16 tolerated(0.09) benign(0.017) TCGA-BR-4201-01 1 11142746 11142746 G A EXOSC10 Missense_Mutation p.R427C 0.19 deleterious(0) probably_damaging(1) TCGA-BR-4201-01 1 111957125 111957125 T - OVGP1 Frame_Shift_Del p.E667Kfs*30 0.16 TCGA-BR-4201-01 1 114092138 114092138 C T MAGI3 Silent p.G106G 0.12 TCGA-BR-4201-01 1 114454678 114454678 G T DCLRE1B Missense_Mutation p.K488N 0.16 tolerated_low_confidence(0.06) benign(0.05) TCGA-BR-4201-01 1 115231320 115231320 G A AMPD1 Missense_Mutation p.A59V 0.14 deleterious(0) probably_damaging(0.999) TCGA-BR-4201-01 1 11574466 11574466 G - PTCHD2 Frame_Shift_Del p.T448Qfs*71 0.16 TCGA-BR-4201-01 1 117156651 117156651 C T IGSF3 Missense_Mutation p.E190K 0.19 deleterious(0.04) benign(0.099) TCGA-BR-4201-01 1 117699263 117699263 G A VTCN1 Silent p.G126G 0.20 TCGA-BR-4201-01 1 118455168 118455168 C T GDAP2 Missense_Mutation p.V152I 0.11 tolerated(0.27) benign(0.015) TCGA-BR-4201-01 1 118461278 118461278 G A GDAP2 Missense_Mutation p.S86L 0.16 deleterious(0) probably_damaging(0.998) TCGA-BR-4201-01 1 120056669 120056669 A - HSD3B1 Frame_Shift_Del p.N176Tfs*27 0.24 TCGA-BR-4201-01 1 120438783 120438783 G A ADAM30 Silent p.V59V 0.20 TCGA-BR-4201-01 1 13695754 13695754 A G PRAMEF19 Missense_Mutation p.L404P 0.17 probably_damaging(0.999) TCGA-BR-4201-01 1 14057532 14057532 C T PRDM2 Missense_Mutation p.A16V 0.24 benign(0.349) TCGA-BR-4201-01 1 14105166 14105166 G - PRDM2 Frame_Shift_Del p.E294Kfs*12 0.18 TCGA-BR-4201-01 1 144865839 144865839 A G PDE4DIP Missense_Mutation p.L1914P 0.10 deleterious(0) probably_damaging(1) TCGA-BR-4201-01 1 146399620 146399620 G A NBPF12 Missense_Mutation p.A187T 0.06 possibly_damaging(0.691) TCGA-BR-4201-01 1 147096003 147096003 G A BCL9 Missense_Mutation p.G1175D 0.23 tolerated(0.34) probably_damaging(0.994) TCGA-BR-4201-01 1 149884988 149884988 G A SV2A Silent p.G135G 0.21 TCGA-BR-4201-01 1 149898338 149898338 T C SF3B4 Silent p.A212A 0.26 TCGA-BR-4201-01 1 150525383 150525383 G A ADAMTSL4 Missense_Mutation p.G30R 0.09 tolerated(0.18) benign(0.275) TCGA-BR-4201-01 1 150933159 150933159 C - SETDB1 Frame_Shift_Del p.C876Vfs*8 0.12 TCGA-BR-4201-01 1 150958865 150958865 C T ANXA9 Nonsense_Mutation p.Q176* 0.24 TCGA-BR-4201-01 1 151861728 151861728 G A THEM4 Silent p.C136C 0.09 TCGA-BR-4201-01 1 152081809 152081809 T C TCHH Missense_Mutation p.E1295G 0.16 unknown(0) TCGA-BR-4201-01 1 152127143 152127143 T C RPTN 3'UTR 0.18 TCGA-BR-4201-01 1 153588311 153588311 G A S100A14 Silent p.N8N 0.12 TCGA-BR-4201-01 1 153924897 153924897 C T CRTC2 Missense_Mutation p.R243Q 0.19 tolerated(0.08) possibly_damaging(0.905) TCGA-BR-4201-01 1 154296925 154296925 C T AQP10 Missense_Mutation p.A292V 0.18 tolerated(0.1) benign(0.004) TCGA-BR-4201-01 1 154544182 154544182 C T CHRNB2 Missense_Mutation p.P295S 0.15 deleterious(0) probably_damaging(1) TCGA-BR-4201-01 1 154988858 154988858 C T ZBTB7B Silent p.F473F 0.11 TCGA-BR-4201-01 1 155239459 155239459 G A CLK2 Silent p.Y73Y 0.09 TCGA-BR-4201-01 1 155292496 155292496 G A RUSC1 Missense_Mutation p.R311Q 0.18 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-BR-4201-01 1 155722380 155722380 T C GON4L Splice_Site p.X1948_splice 0.36 TCGA-BR-4201-01 1 155880587 155880587 A - RIT1 Frame_Shift_Del p.F6Sfs*36 0.16 TCGA-BR-4201-01 1 156268818 156268818 G A VHLL Missense_Mutation p.R55W 0.18 tolerated(0.17) probably_damaging(0.915) TCGA-BR-4201-01 1 156844776 156844776 C T NTRK1 Missense_Mutation p.R444W 0.17 deleterious(0) possibly_damaging(0.715) TCGA-BR-4201-01 1 156915860 156915860 T G ARHGEF11 Missense_Mutation p.E930A 0.15 deleterious(0.01) possibly_damaging(0.774) TCGA-BR-4201-01 1 156925516 156925516 G A ARHGEF11 Missense_Mutation p.P583S 0.13 deleterious(0) probably_damaging(1) TCGA-BR-4201-01 1 157494244 157494244 T C FCRL5 Silent p.P688P 0.20 TCGA-BR-4201-01 1 157665164 157665164 C A FCRL3 Missense_Mutation p.G456C 0.17 deleterious(0) probably_damaging(0.997) TCGA-BR-4201-01 1 157666067 157666067 G A FCRL3 Silent p.L299L 0.08 TCGA-BR-4201-01 1 158669503 158669503 A - OR6K2 Frame_Shift_Del p.S314Pfs*2 0.22 TCGA-BR-4201-01 1 160465878 160465878 G T SLAMF6 Missense_Mutation p.L119M 0.15 tolerated(0.16) benign(0.19) TCGA-BR-4201-01 1 160850999 160850999 C T ITLN1 Missense_Mutation p.R170H 0.16 tolerated(0.94) benign(0.005) TCGA-BR-4201-01 1 161183198 161183198 T G NDUFS2 Missense_Mutation p.F382C 0.14 deleterious(0) probably_damaging(1) TCGA-BR-4201-01 1 16258453 16258453 C T SPEN Silent p.S1906S 0.18 TCGA-BR-4201-01 1 16464386 16464386 C T EPHA2 Missense_Mutation p.R425H 0.26 tolerated(0.08) benign(0.001) TCGA-BR-4201-01 1 16913543 16913543 A G NBPF1 Splice_Site p.X260_splice 0.05 TCGA-BR-4201-01 1 169702784 169702784 T C SELE 5'UTR 0.19 TCGA-BR-4201-01 1 170004605 170004605 A - KIFAP3 Frame_Shift_Del p.C203Vfs*22 0.13 TCGA-BR-4201-01 1 171076863 171076863 C T FMO3 Silent p.G123G 0.26 TCGA-BR-4201-01 1 17313587 17313587 T C ATP13A2 Missense_Mutation p.T1013A 0.26 tolerated(0.85) benign(0) TCGA-BR-4201-01 1 173930312 173930312 C T RC3H1 Missense_Mutation p.R758Q 0.24 deleterious(0) probably_damaging(0.996) TCGA-BR-4201-01 1 174417414 174417414 T C GPR52 Silent p.I55I 0.16 TCGA-BR-4201-01 1 176671867 176671867 T C PAPPA2 Missense_Mutation p.S1121P 0.13 tolerated(0.09) benign(0.095) TCGA-BR-4201-01 1 180235536 180235536 C T LHX4 Silent p.G86G 0.14 TCGA-BR-4201-01 1 180240879 180240879 G A LHX4 Intron 0.14 TCGA-BR-4201-01 1 181706764 181706764 G A CACNA1E Missense_Mutation p.V1176I 0.23 tolerated(0.07) benign(0.369) TCGA-BR-4201-01 1 181731743 181731743 T C CACNA1E Missense_Mutation p.F1547L 0.21 deleterious(0.04) benign(0.418) TCGA-BR-4201-01 1 183617241 183617241 C T APOBEC4 Missense_Mutation p.A226T 0.15 tolerated(0.07) possibly_damaging(0.761) TCGA-BR-4201-01 1 183944249 183944249 T - COLGALT2 Frame_Shift_Del p.K158Nfs*9 0.17 TCGA-BR-4201-01 1 185270128 185270128 T C IVNS1ABP Missense_Mutation p.M366V 0.17 deleterious(0.02) benign(0) TCGA-BR-4201-01 1 185931751 185931751 G A HMCN1 Missense_Mutation p.A644T 0.13 benign(0.003) TCGA-BR-4201-01 1 186092202 186092202 C T HMCN1 Missense_Mutation p.R4117C 0.24 possibly_damaging(0.606) TCGA-BR-4201-01 1 186113746 186113746 G A HMCN1 Missense_Mutation p.G4726D 0.17 benign(0) TCGA-BR-4201-01 1 186276755 186276755 C T PRG4 Missense_Mutation p.T635I 0.21 unknown(0) TCGA-BR-4201-01 1 186328983 186328983 C T TPR Missense_Mutation p.R446H 0.20 possibly_damaging(0.522) TCGA-BR-4201-01 1 190129847 190129847 G A BRINP3 Missense_Mutation p.L379F 0.22 deleterious(0.02) probably_damaging(0.997) TCGA-BR-4201-01 1 190129967 190129967 A G BRINP3 Missense_Mutation p.S339P 0.16 deleterious(0.01) possibly_damaging(0.601) TCGA-BR-4201-01 1 19665864 19665864 G A CAPZB 3'UTR 0.14 TCGA-BR-4201-01 1 196887419 196887419 A - CFHR4 Frame_Shift_Del p.T541Qfs*30 0.19 TCGA-BR-4201-01 1 197098315 197098315 A G ASPM Splice_Site p.X920_splice 0.14 TCGA-BR-4201-01 1 197411445 197411446 TC - CRB1 Intron 0.12 TCGA-BR-4201-01 1 197564380 197564380 A C DENND1B Silent p.A335A 0.15 TCGA-BR-4201-01 1 20009604 20009604 T C TMCO4 Missense_Mutation p.M612V 0.25 tolerated_low_confidence(1) benign(0) TCGA-BR-4201-01 1 201023674 201023674 T G CACNA1S Missense_Mutation p.S1209R 0.15 tolerated(0.06) benign(0.088) TCGA-BR-4201-01 1 202465946 202465946 C T PPP1R12B Missense_Mutation p.T829M 0.21 tolerated(0.11) benign(0.146) TCGA-BR-4201-01 1 202985125 202985125 C T TMEM183A Nonsense_Mutation p.R189* 0.19 TCGA-BR-4201-01 1 203316449 203316449 T C FMOD Missense_Mutation p.N317S 0.06 deleterious(0.02) possibly_damaging(0.875) TCGA-BR-4201-01 1 204400821 204400821 A C PIK3C2B Missense_Mutation p.L1419R 0.15 tolerated(0.15) possibly_damaging(0.844) TCGA-BR-4201-01 1 204418318 204418318 G T PIK3C2B Missense_Mutation p.L781M 0.33 deleterious(0) probably_damaging(1) TCGA-BR-4201-01 1 20442089 20442089 T C PLA2G2D Missense_Mutation p.D68G 0.13 deleterious(0) probably_damaging(0.994) TCGA-BR-4201-01 1 204501904 204501904 T C MDM4 Intron 0.18 TCGA-BR-4201-01 1 205589099 205589099 A - ELK4 Frame_Shift_Del p.S359Hfs*7 0.12 TCGA-BR-4201-01 1 205589189 205589189 G A ELK4 Missense_Mutation p.P329S 0.14 deleterious(0.01) possibly_damaging(0.883) TCGA-BR-4201-01 1 205766095 205766095 G A SLC41A1 Silent p.D343D 0.14 TCGA-BR-4201-01 1 206611390 206611390 G T SRGAP2 Silent p.R484R 0.22 TCGA-BR-4201-01 1 208061172 208061172 G A CD34 Nonsense_Mutation p.R357* 0.09 TCGA-BR-4201-01 1 210411408 210411408 G A SERTAD4 Missense_Mutation p.G35R 0.19 tolerated(0.87) benign(0.001) TCGA-BR-4201-01 1 211546014 211546014 C T TRAF5 Silent p.A548A 0.17 TCGA-BR-4201-01 1 211749384 211749384 G - SLC30A1 Frame_Shift_Del p.C291Afs*5 0.18 TCGA-BR-4201-01 1 211843642 211843642 G A NEK2 Missense_Mutation p.T249M 0.17 deleterious(0.03) possibly_damaging(0.581) TCGA-BR-4201-01 1 211923141 211923141 T - LPGAT1 3'UTR 0.15 TCGA-BR-4201-01 1 212560431 212560431 C T TMEM206 Missense_Mutation p.E110K 0.26 tolerated_low_confidence(0.19) probably_damaging(0.923) TCGA-BR-4201-01 1 214705976 214705976 G A PTPN14 Intron 0.13 TCGA-BR-4201-01 1 214792011 214792011 C T CENPF Missense_Mutation p.P152L 0.20 possibly_damaging(0.747) TCGA-BR-4201-01 1 214819293 214819293 G A CENPF Missense_Mutation p.R2127H 0.18 probably_damaging(0.998) TCGA-BR-4201-01 1 21795231 21795231 G A NBPF3 Missense_Mutation p.G62S 0.16 tolerated(0.26) benign(0.079) TCGA-BR-4201-01 1 217955552 217955552 C T SPATA17 Missense_Mutation p.R254C 0.13 deleterious(0) probably_damaging(1) TCGA-BR-4201-01 1 220324711 220324711 G A RAB3GAP2 Missense_Mutation p.A1355V 0.18 tolerated(0.22) benign(0.182) TCGA-BR-4201-01 1 223177546 223177546 C T DISP1 Missense_Mutation p.A936V 0.13 deleterious(0.04) possibly_damaging(0.667) TCGA-BR-4201-01 1 223943271 223943271 G A CAPN2 Missense_Mutation p.V409M 0.17 deleterious(0.02) probably_damaging(0.937) TCGA-BR-4201-01 1 22839533 22839533 G A ZBTB40 Missense_Mutation p.G860R 0.23 deleterious(0) probably_damaging(0.989) TCGA-BR-4201-01 1 228509533 228509533 C T OBSCN Silent p.S5954S 0.09 TCGA-BR-4201-01 1 230798937 230798937 G A COG2 Missense_Mutation p.M117I 0.20 tolerated(0.11) benign(0.016) TCGA-BR-4201-01 1 231954130 231954131 AG - DISC1 Frame_Shift_Del p.E619Rfs*24 0.14 TCGA-BR-4201-01 1 232626723 232626723 T C SIPA1L2 Missense_Mutation p.E568G 0.15 deleterious(0) probably_damaging(0.997) TCGA-BR-4201-01 1 233134062 233134062 G A PCNXL2 Missense_Mutation p.A1909V 0.14 tolerated(0.48) benign(0.001) TCGA-BR-4201-01 1 23409681 23409681 C T KDM1A Nonsense_Mutation p.R819* 0.17 TCGA-BR-4201-01 1 234565327 234565327 T - TARBP1 Frame_Shift_Del p.K902Nfs*25 0.19 TCGA-BR-4201-01 1 236902754 236902754 C A ACTN2 Silent p.I343I 0.17 TCGA-BR-4201-01 1 236920825 236920825 G A ACTN2 Missense_Mutation p.A732T 0.11 tolerated(0.3) probably_damaging(1) TCGA-BR-4201-01 1 240072247 240072247 C T CHRM3 Missense_Mutation p.A499V 0.21 deleterious(0.02) probably_damaging(0.987) TCGA-BR-4201-01 1 24448013 24448013 T C IL22RA1 Missense_Mutation p.Q336R 0.28 tolerated(0.49) benign(0.008) TCGA-BR-4201-01 1 246755180 246755180 A - CNST Frame_Shift_Del p.I108Ffs*29 0.11 TCGA-BR-4201-01 1 246890298 246890298 G A SCCPDH Missense_Mutation p.V99I 0.29 deleterious(0.02) possibly_damaging(0.615) TCGA-BR-4201-01 1 247063740 247063740 A T AHCTF1 Missense_Mutation p.F392L 0.27 deleterious(0.03) possibly_damaging(0.908) TCGA-BR-4201-01 1 247875374 247875374 G A OR6F1 Silent p.I228I 0.08 TCGA-BR-4201-01 1 247920953 247920953 G A OR1C1 Silent p.Y252Y 0.21 TCGA-BR-4201-01 1 248059482 248059482 C T OR2W3 Silent p.T198T 0.18 TCGA-BR-4201-01 1 25825033 25825033 A - TMEM57 3'UTR 0.19 TCGA-BR-4201-01 1 26646688 26646688 C T CD52 Silent p.N27N 0.23 TCGA-BR-4201-01 1 26669262 26669262 G T AIM1L Missense_Mutation p.L189I 0.18 tolerated(0.91) possibly_damaging(0.566) TCGA-BR-4201-01 1 26883502 26883502 G A RPS6KA1 Missense_Mutation p.R341H 0.11 deleterious(0) possibly_damaging(0.494) TCGA-BR-4201-01 1 27094434 27094434 C T ARID1A Missense_Mutation p.P1048S 0.18 unknown(0) TCGA-BR-4201-01 1 27436202 27436202 C T SLC9A1 Missense_Mutation p.G294S 0.18 deleterious(0.04) probably_damaging(0.985) TCGA-BR-4201-01 1 29475698 29475703 GGCTCC - SRSF4 In_Frame_Del p.R235_S236del 0.15 TCGA-BR-4201-01 1 32084832 32084832 C - HCRTR1 Frame_Shift_Del p.P15Lfs*63 0.23 TCGA-BR-4201-01 1 32794717 32794717 C T HDAC1 Nonsense_Mutation p.R229* 0.09 TCGA-BR-4201-01 1 33318764 33318764 C T S100PBP Missense_Mutation p.T370M 0.14 tolerated(1) benign(0.006) TCGA-BR-4201-01 1 34046380 34046380 G A CSMD2 Missense_Mutation p.R2456W 0.19 tolerated(0.09) probably_damaging(0.978) TCGA-BR-4201-01 1 34102053 34102053 C T CSMD2 Missense_Mutation p.G1586R 0.18 tolerated(0.11) benign(0.015) TCGA-BR-4201-01 1 34666585 34666585 C T C1orf94 Nonsense_Mutation p.Q408* 0.25 TCGA-BR-4201-01 1 35334284 35334284 G A DLGAP3 Missense_Mutation p.R803W 0.15 deleterious(0) possibly_damaging(0.683) TCGA-BR-4201-01 1 36029369 36029369 C T NCDN Missense_Mutation p.R538C 0.26 deleterious(0) possibly_damaging(0.848) TCGA-BR-4201-01 1 36181448 36181448 G A C1orf216 Missense_Mutation p.R159C 0.13 deleterious(0) probably_damaging(0.947) TCGA-BR-4201-01 1 36558054 36558054 C T ADPRHL2 Missense_Mutation p.R245C 0.21 deleterious(0) probably_damaging(0.972) TCGA-BR-4201-01 1 3697831 3697831 C T LRRC47 Missense_Mutation p.D525N 0.16 tolerated(0.1) benign(0.008) TCGA-BR-4201-01 1 39823511 39823511 A G MACF1 Silent p.L1901L 0.27 TCGA-BR-4201-01 1 40149806 40149806 C T HPCAL4 Missense_Mutation p.A61T 0.19 deleterious(0) possibly_damaging(0.658) TCGA-BR-4201-01 1 41220120 41220120 G A NFYC Intron 0.17 TCGA-BR-4201-01 1 41503057 41503057 G A SCMH1 Missense_Mutation p.A542V 0.30 tolerated(0.34) benign(0.008) TCGA-BR-4201-01 1 42901019 42901019 T C ZMYND12 Missense_Mutation p.Y252C 0.18 tolerated(0.1) benign(0.006) TCGA-BR-4201-01 1 43738712 43738712 C T TMEM125 Missense_Mutation p.R107C 0.16 deleterious(0) probably_damaging(0.997) TCGA-BR-4201-01 1 44137442 44137442 G A KDM4A Missense_Mutation p.V544M 0.15 deleterious(0.01) benign(0.085) TCGA-BR-4201-01 1 45270162 45270162 G T PLK3 Silent p.S498S 0.19 TCGA-BR-4201-01 1 45470509 45470509 C A HECTD3 Intron 0.31 TCGA-BR-4201-01 1 45799087 45799087 G A MUTYH Missense_Mutation p.R113W 0.26 tolerated(0.2) benign(0.004) TCGA-BR-4201-01 1 46736382 46736382 G A RAD54L Missense_Mutation p.R365Q 0.16 tolerated(0.16) benign(0.152) TCGA-BR-4201-01 1 47717309 47717309 T - STIL Frame_Shift_Del p.K1122Nfs*3 0.19 TCGA-BR-4201-01 1 51736936 51736936 G A RNF11 Missense_Mutation p.C136Y 0.15 deleterious(0) probably_damaging(1) TCGA-BR-4201-01 1 52823526 52823526 C T CC2D1B Silent p.R508R 0.21 TCGA-BR-4201-01 1 54666207 54666207 G A MRPL37 Silent p.P97P 0.26 TCGA-BR-4201-01 1 57610998 57610998 C T DAB1 Missense_Mutation p.D58N 0.10 deleterious(0) probably_damaging(0.992) TCGA-BR-4201-01 1 60499273 60499273 T C C1orf87 Missense_Mutation p.R302G 0.21 deleterious(0.05) benign(0.051) TCGA-BR-4201-01 1 61869831 61869831 G A NFIA Silent p.Q422Q 0.15 TCGA-BR-4201-01 1 62594566 62594566 C T INADL Silent p.H1740H 0.11 TCGA-BR-4201-01 1 62703889 62703889 G A KANK4 3'UTR 0.60 TCGA-BR-4201-01 1 6279583 6279583 C T RNF207 3'UTR 0.33 TCGA-BR-4201-01 1 65323363 65323363 G A JAK1 Silent p.T478T 0.21 TCGA-BR-4201-01 1 68960310 68960310 T - DEPDC1 Frame_Shift_Del p.K39Nfs*19 0.21 TCGA-BR-4201-01 1 74492558 74492559 - T LRRIQ3 Frame_Shift_Ins p.T605Nfs*13 0.17 TCGA-BR-4201-01 1 78392423 78392424 - A NEXN Frame_Shift_Ins p.E240Rfs*13 0.13 TCGA-BR-4201-01 1 7858597 7858597 C - PER3 Frame_Shift_Del p.D218Efs*17 0.11 TCGA-BR-4201-01 1 85656333 85656333 G A SYDE2 Missense_Mutation p.T283I 0.17 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BR-4201-01 1 86905964 86905964 G T CLCA2 Missense_Mutation p.G446V 0.18 deleterious(0) probably_damaging(1) TCGA-BR-4201-01 1 87025666 87025666 T - CLCA4 Frame_Shift_Del p.F73Sfs*7 0.09 TCGA-BR-4201-01 1 89520420 89520420 T C GBP1 Missense_Mutation p.N537S 0.11 tolerated(0.19) benign(0) TCGA-BR-4201-01 1 89521715 89521715 G A GBP1 Missense_Mutation p.P451L 0.17 deleterious(0) probably_damaging(1) TCGA-BR-4201-01 1 91851380 91851380 A G HFM1 Missense_Mutation p.I169T 0.15 tolerated_low_confidence(0.37) benign(0.007) TCGA-BR-4201-01 1 9307041 9307041 T C H6PD Missense_Mutation p.L215P 0.21 deleterious(0) probably_damaging(0.998) TCGA-BR-4201-01 1 93987691 93987691 C T FNBP1L Missense_Mutation p.R65W 0.42 deleterious(0) probably_damaging(0.962) TCGA-BR-4201-01 1 94639435 94639435 T C ARHGAP29 Missense_Mutation p.Q1259R 0.19 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-BR-4201-01 1 94955520 94955520 T C ABCD3 Silent p.D437D 0.18 TCGA-BR-4201-01 1 97771791 97771791 A - DPYD Frame_Shift_Del p.F707Lfs*4 0.14 TCGA-BR-4201-01 1 9778917 9778917 G A PIK3CD Missense_Mutation p.A396T 0.15 tolerated(0.09) possibly_damaging(0.507) TCGA-BR-4201-01 20 13763275 13763275 T - ESF1 Frame_Shift_Del p.N171Tfs*18 0.17 TCGA-BR-4201-01 20 18295755 18295755 C T ZNF133 Missense_Mutation p.P86L 0.12 tolerated(1) benign(0.009) TCGA-BR-4201-01 20 20016922 20016922 C T CRNKL1 Missense_Mutation p.A822T 0.18 deleterious(0) probably_damaging(0.997) TCGA-BR-4201-01 20 21687619 21687619 C T PAX1 Missense_Mutation p.A277V 0.17 tolerated(0.07) benign(0.017) TCGA-BR-4201-01 20 2308989 2308989 G A TGM3 Silent p.T437T 0.16 TCGA-BR-4201-01 20 23967095 23967095 C T GGTLC1 Missense_Mutation p.A52T 0.25 deleterious(0.03) possibly_damaging(0.611) TCGA-BR-4201-01 20 24988241 24988241 C T ACSS1 3'UTR 0.35 TCGA-BR-4201-01 20 25239910 25239910 G A PYGB Missense_Mutation p.R94H 0.22 deleterious(0) probably_damaging(0.998) TCGA-BR-4201-01 20 25260916 25260918 GAA - PYGB In_Frame_Del p.K371del 0.14 TCGA-BR-4201-01 20 2636748 2636748 C T NOP56 Intron 0.10 TCGA-BR-4201-01 20 2820491 2820491 G A PCED1A Missense_Mutation p.A23V 0.08 deleterious(0.01) possibly_damaging(0.582) TCGA-BR-4201-01 20 31590444 31590444 G A SUN5 Missense_Mutation p.R54C 0.33 deleterious(0.04) possibly_damaging(0.507) TCGA-BR-4201-01 20 32344991 32344991 C - ZNF341 Frame_Shift_Del p.T262Qfs*21 0.19 TCGA-BR-4201-01 20 33356268 33356268 T C NCOA6 Silent p.P171P 0.13 TCGA-BR-4201-01 20 34295045 34295045 T C RBM39 Missense_Mutation p.Q435R 0.13 tolerated(0.32) benign(0.004) TCGA-BR-4201-01 20 36694647 36694647 A - RPRD1B Frame_Shift_Del p.K275Nfs*2 0.23 TCGA-BR-4201-01 20 36770552 36770552 C A TGM2 Silent p.S303S 0.11 TCGA-BR-4201-01 20 37357184 37357184 G A SLC32A1 Missense_Mutation p.V494I 0.33 tolerated(1) benign(0.025) TCGA-BR-4201-01 20 4167954 4167954 G A SMOX Missense_Mutation p.R523H 0.14 deleterious(0.02) probably_damaging(1) TCGA-BR-4201-01 20 42089154 42089154 G T SRSF6 Splice_Site p.X197_splice 0.12 TCGA-BR-4201-01 20 43933295 43933295 G A MATN4 Silent p.R72R 0.27 TCGA-BR-4201-01 20 43941018 43941018 C T RBPJL Missense_Mutation p.S201L 0.23 deleterious(0) benign(0.044) TCGA-BR-4201-01 20 44037177 44037177 G A DBNDD2 Missense_Mutation p.E126K 0.33 deleterious(0) probably_damaging(0.997) TCGA-BR-4201-01 20 44166631 44166631 C T WFDC6 Missense_Mutation p.R65H 0.35 deleterious(0.04) benign(0.381) TCGA-BR-4201-01 20 44521441 44521441 G A CTSA Silent p.L192L 0.11 TCGA-BR-4201-01 20 50400983 50400983 C - SALL4 Frame_Shift_Del p.V995Ffs*14 0.31 TCGA-BR-4201-01 20 52775519 52775519 T - CYP24A1 Frame_Shift_Del p.A379Pfs*3 0.10 TCGA-BR-4201-01 20 5282888 5282888 A G PROKR2 Missense_Mutation p.V318A 0.10 deleterious(0) possibly_damaging(0.859) TCGA-BR-4201-01 20 56098737 56098737 T A CTCFL Missense_Mutation p.E175D 0.06 tolerated(0.13) possibly_damaging(0.585) TCGA-BR-4201-01 20 57415375 57415375 G A RP4-806M20.3 5'Flank 0.16 TCGA-BR-4201-01 20 57564992 57564992 G A NELFCD Missense_Mutation p.G264D 0.14 deleterious(0.01) probably_damaging(0.986) TCGA-BR-4201-01 20 57899564 57899564 A G EDN3 3'UTR 0.14 TCGA-BR-4201-01 20 60714901 60714901 C T PSMA7 Missense_Mutation p.R95Q 0.18 deleterious(0) probably_damaging(0.926) TCGA-BR-4201-01 20 60854271 60854271 G A OSBPL2 Missense_Mutation p.A184T 0.30 deleterious(0) probably_damaging(0.976) TCGA-BR-4201-01 20 61525803 61525803 C T DIDO1 Missense_Mutation p.R845H 0.25 probably_damaging(0.999) TCGA-BR-4201-01 20 61835152 61835152 C T YTHDF1 Missense_Mutation p.S47N 0.27 tolerated(0.06) possibly_damaging(0.856) TCGA-BR-4201-01 20 62196162 62196162 C T HELZ2 Missense_Mutation p.R1338H 0.19 tolerated(0.06) probably_damaging(1) TCGA-BR-4201-01 20 62329757 62329757 G A TNFRSF6B Silent p.A248A 0.44 TCGA-BR-4201-01 20 62697836 62697836 C T TCEA2 Missense_Mutation p.A27V 0.08 deleterious(0.04) probably_damaging(0.987) TCGA-BR-4201-01 20 62737901 62737901 G A NPBWR2 Missense_Mutation p.T95M 0.12 tolerated(0.13) benign(0.04) TCGA-BR-4201-01 20 62895852 62895854 CTT - PCMTD2 In_Frame_Del p.F128del 0.12 TCGA-BR-4201-01 20 9353043 9353043 A - PLCB4 Frame_Shift_Del p.I229Sfs*9 0.11 TCGA-BR-4201-01 20 9404516 9404516 G A PLCB4 Missense_Mutation p.R802Q 0.15 deleterious(0) probably_damaging(1) TCGA-BR-4201-01 21 16338330 16338330 T - NRIP1 Frame_Shift_Del p.E729Rfs*5 0.21 TCGA-BR-4201-01 21 16340294 16340294 G T NRIP1 Missense_Mutation p.Q74K 0.15 tolerated(0.62) benign(0.19) TCGA-BR-4201-01 21 17191019 17191019 A - USP25 Frame_Shift_Del p.K313Nfs*25 0.15 TCGA-BR-4201-01 21 17250724 17250724 C T USP25 Missense_Mutation p.T1033M 0.12 deleterious(0.01) probably_damaging(0.962) TCGA-BR-4201-01 21 28212641 28212641 C T ADAMTS1 Missense_Mutation p.C540Y 0.08 deleterious(0) probably_damaging(1) TCGA-BR-4201-01 21 31709741 31709741 G T KRTAP27-1 Silent p.P82P 0.16 TCGA-BR-4201-01 21 32492631 32492631 G A TIAM1 3'UTR 0.21 TCGA-BR-4201-01 21 33954519 33954519 C T AP000275.65 Silent p.S291S 0.15 TCGA-BR-4201-01 21 35893850 35893850 G A RCAN1 Missense_Mutation p.A178V 0.15 deleterious(0.01) possibly_damaging(0.852) TCGA-BR-4201-01 21 39672159 39672159 G A KCNJ15 Missense_Mutation p.D326N 0.23 tolerated(0.06) probably_damaging(0.999) TCGA-BR-4201-01 21 43274764 43274764 G - PRDM15 Frame_Shift_Del p.P516Rfs*22 0.19 TCGA-BR-4201-01 21 46640907 46640907 G A ADARB1 Missense_Mutation p.R675H 0.14 deleterious(0.05) probably_damaging(0.991) TCGA-BR-4201-01 21 46685310 46685310 G A POFUT2 3'UTR 0.47 TCGA-BR-4201-01 21 47808672 47808672 C T PCNT Silent p.D1160D 0.14 TCGA-BR-4201-01 21 47975905 47975905 A - DIP2A Frame_Shift_Del p.K1135Rfs*3 0.13 TCGA-BR-4201-01 22 17265158 17265158 A - XKR3 Frame_Shift_Del p.L244Wfs*7 0.14 TCGA-BR-4201-01 22 19839620 19839620 G A C22orf29 Silent p.T55T 0.17 TCGA-BR-4201-01 22 20128528 20128528 G A ZDHHC8 Missense_Mutation p.R296H 0.18 tolerated(0.08) benign(0.015) TCGA-BR-4201-01 22 20229616 20229616 A G RTN4R Missense_Mutation p.L347P 0.22 tolerated(0.11) benign(0.009) TCGA-BR-4201-01 22 20760748 20760748 C T ZNF74 Silent p.N475N 0.14 TCGA-BR-4201-01 22 20796481 20796481 C T KLHL22 Missense_Mutation p.R595H 0.24 tolerated(0.1) benign(0.021) TCGA-BR-4201-01 22 20929406 20929406 A G MED15 Missense_Mutation p.T387A 0.13 tolerated_low_confidence(0.14) unknown(0) TCGA-BR-4201-01 22 21385960 21385960 C A SLC7A4 Missense_Mutation p.G48C 0.23 deleterious(0) probably_damaging(0.999) TCGA-BR-4201-01 22 22316806 22316806 C A TOP3B Missense_Mutation p.G507V 0.17 deleterious(0) probably_damaging(0.998) TCGA-BR-4201-01 22 22869868 22869868 A T ZNF280A Missense_Mutation p.D29E 0.20 deleterious(0.02) probably_damaging(0.968) TCGA-BR-4201-01 22 24134057 24134057 A - SMARCB1 Frame_Shift_Del p.T72Qfs*13 0.14 TCGA-BR-4201-01 22 24573539 24573539 C A CABIN1 Silent p.P2091P 0.18 TCGA-BR-4201-01 22 24939903 24939903 G A GUCD1 Missense_Mutation p.R179C 0.17 deleterious(0) benign(0.001) TCGA-BR-4201-01 22 25246318 25246318 C T SGSM1 Missense_Mutation p.A125V 0.20 tolerated(0.11) benign(0.26) TCGA-BR-4201-01 22 25264717 25264717 C T SGSM1 Nonsense_Mutation p.R396* 0.21 TCGA-BR-4201-01 22 25308664 25308665 - C SGSM1 Frame_Shift_Ins p.H1015Pfs*25 0.12 TCGA-BR-4201-01 22 26091137 26091137 C T ADRBK2 Silent p.A372A 0.12 TCGA-BR-4201-01 22 26997913 26997913 C - CRYBB1 Frame_Shift_Del p.D169Tfs*18 0.24 TCGA-BR-4201-01 22 29383158 29383159 - C ZNRF3 Frame_Shift_Ins p.K134Efs*24 0.16 TCGA-BR-4201-01 22 31266670 31266670 G A OSBP2 Splice_Site p.X369_splice 0.09 TCGA-BR-4201-01 22 31536298 31536299 - A PLA2G3 Frame_Shift_Ins p.G15Wfs*52 0.13 TCGA-BR-4201-01 22 31850237 31850237 C T EIF4ENIF1 Missense_Mutation p.V469I 0.13 tolerated(0.93) benign(0.291) TCGA-BR-4201-01 22 36003418 36003418 C - MB Frame_Shift_Del p.A131Pfs*2 0.13 TCGA-BR-4201-01 22 36696961 36696961 T A MYH9 Missense_Mutation p.E925V 0.13 probably_damaging(0.939) TCGA-BR-4201-01 22 37882084 37882084 C T MFNG Silent p.P44P 0.19 TCGA-BR-4201-01 22 38026101 38026101 G A GGA1 Missense_Mutation p.G419S 0.14 tolerated(0.38) possibly_damaging(0.696) TCGA-BR-4201-01 22 38039705 38039705 G A SH3BP1 Silent p.P176P 0.18 TCGA-BR-4201-01 22 39910152 39910152 G A MIEF1 Missense_Mutation p.D406N 0.18 deleterious(0.01) probably_damaging(0.98) TCGA-BR-4201-01 22 40807697 40807697 A G MKL1 Silent p.H831H 0.17 TCGA-BR-4201-01 22 41513716 41513716 A G EP300 Missense_Mutation p.Y207C 0.10 unknown(0) TCGA-BR-4201-01 22 41523693 41523693 G A EP300 Missense_Mutation p.R370H 0.20 unknown(0) TCGA-BR-4201-01 22 44536011 44536011 A G PARVB Missense_Mutation p.M267V 0.18 tolerated(0.26) benign(0.037) TCGA-BR-4201-01 22 44681393 44681393 G A KIAA1644 Silent p.L172L 0.14 TCGA-BR-4201-01 22 50217191 50217191 G A BRD1 Missense_Mutation p.R259C 0.30 deleterious(0) probably_damaging(1) TCGA-BR-4201-01 22 50487735 50487735 T G TTLL8 Missense_Mutation p.K105N 0.17 tolerated(0.08) benign(0.035) TCGA-BR-4201-01 22 50671772 50671772 G A TUBGCP6 Silent p.V363V 0.16 TCGA-BR-4201-01 2 106002900 106002900 C A FHL2 Missense_Mutation p.S25I 0.18 tolerated(0.13) benign(0.08) TCGA-BR-4201-01 2 107084760 107084760 G T RGPD3 5'UTR 0.21 TCGA-BR-4201-01 2 10729712 10729712 G A NOL10 Missense_Mutation p.R530C 0.17 deleterious(0.05) benign(0.031) TCGA-BR-4201-01 2 109088540 109088540 C T GCC2 Nonsense_Mutation p.R919* 0.18 TCGA-BR-4201-01 2 111430296 111430296 G T BUB1 Missense_Mutation p.L122I 0.16 tolerated(0.11) benign(0.256) TCGA-BR-4201-01 2 112582738 112582739 - G ANAPC1 Frame_Shift_Ins p.Q904Pfs*13 0.10 TCGA-BR-4201-01 2 113080379 113080379 G A ZC3H6 Missense_Mutation p.D414N 0.16 tolerated(0.13) possibly_damaging(0.856) TCGA-BR-4201-01 2 113147515 113147515 A G RGPD8 Missense_Mutation p.F1003L 0.09 deleterious(0) possibly_damaging(0.688) TCGA-BR-4201-01 2 113414767 113414767 G A SLC20A1 Missense_Mutation p.A243T 0.20 deleterious(0) probably_damaging(0.938) TCGA-BR-4201-01 2 116525877 116525877 A G DPP10 Missense_Mutation p.E377G 0.24 deleterious(0.03) benign(0.406) TCGA-BR-4201-01 2 11758537 11758537 C T GREB1 Missense_Mutation p.P1179L 0.21 tolerated(0.52) benign(0.001) TCGA-BR-4201-01 2 11773069 11773069 G A GREB1 Missense_Mutation p.R1624Q 0.32 deleterious(0) possibly_damaging(0.687) TCGA-BR-4201-01 2 121747438 121747438 C T GLI2 Silent p.H1316H 0.14 TCGA-BR-4201-01 2 125405387 125405387 G A CNTNAP5 Silent p.V642V 0.19 TCGA-BR-4201-01 2 128466300 128466300 G A WDR33 Silent p.H1244H 0.12 TCGA-BR-4201-01 2 128867265 128867267 AAG - UGGT1 In_Frame_Del p.K157del 0.15 TCGA-BR-4201-01 2 132914967 132914967 C T ANKRD30BL Missense_Mutation p.G83D 0.24 deleterious(0) probably_damaging(0.949) TCGA-BR-4201-01 2 136540365 136540365 A - UBXN4 Frame_Shift_Del p.K480Rfs*8 0.14 TCGA-BR-4201-01 2 136547334 136547335 TG - LCT Frame_Shift_Del p.T1790Sfs*9 0.17 TCGA-BR-4201-01 2 141200145 141200145 G A LRP1B Missense_Mutation p.H3448Y 0.11 benign(0.415) TCGA-BR-4201-01 2 150069635 150069635 C T LYPD6B Missense_Mutation p.T153M 0.12 probably_damaging(0.932) TCGA-BR-4201-01 2 152501056 152501056 T G NEB Silent p.R2524R 0.20 TCGA-BR-4201-01 2 155555583 155555583 C T KCNJ3 Missense_Mutation p.A99V 0.15 deleterious(0) probably_damaging(0.999) TCGA-BR-4201-01 2 15614225 15614225 C T NBAS Missense_Mutation p.R522H 0.14 deleterious(0) probably_damaging(0.935) TCGA-BR-4201-01 2 15614424 15614424 G A NBAS Nonsense_Mutation p.R456* 0.19 TCGA-BR-4201-01 2 157407127 157407127 C T GPD2 Silent p.D280D 0.13 TCGA-BR-4201-01 2 160993949 160993949 G A ITGB6 Silent p.C552C 0.16 TCGA-BR-4201-01 2 164468131 164468132 - T FIGN Frame_Shift_Ins p.Y71Ifs*35 0.16 TCGA-BR-4201-01 2 165557205 165557205 C T COBLL1 Silent p.V468V 0.12 TCGA-BR-4201-01 2 166223735 166223735 C T SCN2A Missense_Mutation p.R1177W 0.15 deleterious(0) possibly_damaging(0.761) TCGA-BR-4201-01 2 168114392 168114392 G A XIRP2 3'UTR 0.16 TCGA-BR-4201-01 2 169952169 169952169 A - DHRS9 Frame_Shift_Del p.D286Mfs*22 0.16 TCGA-BR-4201-01 2 170806482 170806482 G A UBR3 Missense_Mutation p.R1151H 0.17 tolerated(0.19) benign(0.007) TCGA-BR-4201-01 2 171243767 171243767 C T MYO3B Missense_Mutation p.A509V 0.18 deleterious(0.04) probably_damaging(0.951) TCGA-BR-4201-01 2 173435501 173435501 C - PDK1 Frame_Shift_Del p.P300Lfs*13 0.14 TCGA-BR-4201-01 2 175346265 175346265 A - GPR155 Frame_Shift_Del p.F140Lfs*14 0.19 TCGA-BR-4201-01 2 17698737 17698737 T - RAD51AP2 Frame_Shift_Del p.T316Lfs*2 0.13 TCGA-BR-4201-01 2 178494101 178494101 G A PDE11A 3'UTR 0.22 TCGA-BR-4201-01 2 179398768 179398768 C T TTN Missense_Mutation p.A34192T 0.11 TCGA-BR-4201-01 2 179424439 179424439 C T TTN Missense_Mutation p.R28807H 0.22 TCGA-BR-4201-01 2 179453540 179453540 T C TTN Missense_Mutation p.E20971G 0.19 TCGA-BR-4201-01 2 179454027 179454027 C T TTN Missense_Mutation p.A20809T 0.22 TCGA-BR-4201-01 2 179587174 179587174 G A TTN Missense_Mutation p.P7447L 0.16 TCGA-BR-4201-01 2 179594285 179594286 TG C TTN Frame_Shift_Del p.T6200Pfs*6 0.13 TCGA-BR-4201-01 2 179720989 179720989 T - CCDC141 Frame_Shift_Del p.M954Cfs*4 0.16 TCGA-BR-4201-01 2 182339944 182339944 C T ITGA4 Missense_Mutation p.T162I 0.19 tolerated(0.09) benign(0.003) TCGA-BR-4201-01 2 182399098 182399098 G A ITGA4 Splice_Site p.X961_splice 0.13 TCGA-BR-4201-01 2 183129093 183129093 G A PDE1A Silent p.V50V 0.12 TCGA-BR-4201-01 2 18765854 18765854 C T NT5C1B Missense_Mutation p.D277N 0.29 deleterious_low_confidence(0.02) benign(0.005) TCGA-BR-4201-01 2 196636411 196636411 C T DNAH7 Silent p.S3802S 0.13 TCGA-BR-4201-01 2 201722550 201722550 A - CLK1 Frame_Shift_Del p.F283Lfs*36 0.17 TCGA-BR-4201-01 2 201822217 201822217 T - ORC2 Frame_Shift_Del p.I49* 0.18 TCGA-BR-4201-01 2 202352566 202352566 T - ALS2CR11 Frame_Shift_Del p.V1745* 0.11 TCGA-BR-4201-01 2 202591522 202591522 G - ALS2 Frame_Shift_Del p.P1016Lfs*29 0.24 TCGA-BR-4201-01 2 202899989 202899989 C A FZD7 Missense_Mutation p.P207T 0.29 tolerated(0.15) benign(0.007) TCGA-BR-4201-01 2 202900525 202900525 G A FZD7 Silent p.A385A 0.23 TCGA-BR-4201-01 2 203772679 203772679 A G WDR12 Silent p.Y15Y 0.19 TCGA-BR-4201-01 2 204354422 204354422 T A RAPH1 Missense_Mutation p.N206I 0.14 possibly_damaging(0.655) TCGA-BR-4201-01 2 205978267 205978267 C G PARD3B Missense_Mutation p.H216D 0.19 deleterious(0) probably_damaging(0.99) TCGA-BR-4201-01 2 205983711 205983711 C T PARD3B Silent p.H249H 0.19 TCGA-BR-4201-01 2 206870106 206870106 T C INO80D Missense_Mutation p.I690M 0.06 tolerated_low_confidence(1) benign(0.016) TCGA-BR-4201-01 2 208993108 208993108 C T CRYGC Missense_Mutation p.R115H 0.23 tolerated(0.11) benign(0.042) TCGA-BR-4201-01 2 209308074 209308074 C T PTH2R Nonsense_Mutation p.R171* 0.16 TCGA-BR-4201-01 2 210545527 210545528 - A MAP2 Frame_Shift_Ins p.Q145Tfs*29 0.20 TCGA-BR-4201-01 2 210559705 210559705 G A MAP2 Silent p.A937A 0.14 TCGA-BR-4201-01 2 210561666 210561667 - A MAP2 Frame_Shift_Ins p.T1474Nfs*22 0.22 TCGA-BR-4201-01 2 210699692 210699692 G A UNC80 Missense_Mutation p.C1000Y 0.27 possibly_damaging(0.862) TCGA-BR-4201-01 2 210993786 210993789 GTTA - KANSL1L Frame_Shift_Del p.L399Qfs*13 0.19 TCGA-BR-4201-01 2 211457621 211457621 A G CPS1 Missense_Mutation p.K375E 0.14 deleterious(0.02) possibly_damaging(0.661) TCGA-BR-4201-01 2 211540487 211540487 C T CPS1 Silent p.N1405N 0.18 TCGA-BR-4201-01 2 213921663 213921663 T G IKZF2 Missense_Mutation p.Q100H 0.14 tolerated(0.37) benign(0.168) TCGA-BR-4201-01 2 215274888 215274888 G A SPAG16 Missense_Mutation p.G582D 0.11 tolerated(0.67) benign(0.031) TCGA-BR-4201-01 2 215876354 215876354 C T ABCA12 Missense_Mutation p.R714Q 0.17 tolerated(0.2) benign(0.002) TCGA-BR-4201-01 2 216273121 216273121 G A FN1 Silent p.N776N 0.15 TCGA-BR-4201-01 2 218683462 218683462 G A TNS1 Missense_Mutation p.P1094L 0.12 tolerated(0.06) probably_damaging(0.981) TCGA-BR-4201-01 2 219449364 219449364 T - RQCD1 Frame_Shift_Del p.L119Cfs*29 0.19 TCGA-BR-4201-01 2 219676971 219676971 G A CYP27A1 Missense_Mutation p.R158H 0.10 deleterious(0) probably_damaging(1) TCGA-BR-4201-01 2 219892999 219892999 G - CCDC108 Frame_Shift_Del p.P592Lfs*8 0.22 TCGA-BR-4201-01 2 219893035 219893035 C T CCDC108 Missense_Mutation p.R580H 0.33 tolerated(0.05) benign(0.249) TCGA-BR-4201-01 2 220073005 220073006 TG - ZFAND2B Frame_Shift_Del p.V155Gfs*43 0.26 TCGA-BR-4201-01 2 220074986 220074986 C T ABCB6 Missense_Mutation p.V796I 0.15 deleterious(0) probably_damaging(0.948) TCGA-BR-4201-01 2 220440169 220440169 G A INHA Missense_Mutation p.R341H 0.18 deleterious(0.01) probably_damaging(0.996) TCGA-BR-4201-01 2 224758993 224758993 G A WDFY1 Silent p.D263D 0.21 TCGA-BR-4201-01 2 225637874 225637874 C A DOCK10 Missense_Mutation p.K2068N 0.20 deleterious(0) possibly_damaging(0.861) TCGA-BR-4201-01 2 228883406 228883406 T C SPHKAP Missense_Mutation p.K722E 0.15 deleterious(0.01) benign(0.167) TCGA-BR-4201-01 2 230923861 230923861 C T SLC16A14 Missense_Mutation p.G70S 0.13 deleterious(0.03) possibly_damaging(0.639) TCGA-BR-4201-01 2 233322294 233322294 G A ALPI Missense_Mutation p.R223H 0.12 deleterious(0.01) probably_damaging(0.966) TCGA-BR-4201-01 2 233677140 233677141 TG - GIGYF2 Frame_Shift_Del p.S705Rfs*24 0.17 TCGA-BR-4201-01 2 234072474 234072474 C - INPP5D Frame_Shift_Del p.L444* 0.13 TCGA-BR-4201-01 2 234299106 234299106 A - DGKD Frame_Shift_Del p.N110Tfs*9 0.17 TCGA-BR-4201-01 2 234750556 234750556 C T HJURP Missense_Mutation p.M290I 0.11 tolerated(0.43) benign(0.017) TCGA-BR-4201-01 2 238462236 238462236 C T MLPH 3'UTR 0.22 TCGA-BR-4201-01 2 238666181 238666181 A G LRRFIP1 Intron 0.25 TCGA-BR-4201-01 2 239090722 239090722 C T ILKAP Missense_Mutation p.A274T 0.18 tolerated(0.05) possibly_damaging(0.855) TCGA-BR-4201-01 2 239161605 239161605 G A PER2 Missense_Mutation p.A1020V 0.22 tolerated(0.27) benign(0.008) TCGA-BR-4201-01 2 240981288 240981288 G C PRR21 Missense_Mutation p.A371G 0.24 deleterious_low_confidence(0) possibly_damaging(0.866) TCGA-BR-4201-01 2 241463615 241463615 C T ANKMY1 Missense_Mutation p.G418R 0.20 tolerated(0.53) benign(0) TCGA-BR-4201-01 2 241689869 241689869 C T KIF1A Missense_Mutation p.R985H 0.15 deleterious(0) probably_damaging(0.95) TCGA-BR-4201-01 2 241712648 241712648 G A KIF1A Missense_Mutation p.R355C 0.15 deleterious(0.01) probably_damaging(0.975) TCGA-BR-4201-01 2 241831333 241831333 C A C2orf54 Intron 0.29 TCGA-BR-4201-01 2 242039193 242039193 G T MTERFD2 Silent p.A46A 0.11 TCGA-BR-4201-01 2 242046054 242046054 C - PASK Frame_Shift_Del p.G1307Afs*22 0.19 TCGA-BR-4201-01 2 242066171 242066171 G A PASK Missense_Mutation p.T720M 0.14 deleterious(0.03) probably_damaging(1) TCGA-BR-4201-01 2 242066359 242066359 C T PASK Silent p.L657L 0.13 TCGA-BR-4201-01 2 242163537 242163537 C T ANO7 Missense_Mutation p.T924M 0.13 tolerated_low_confidence(0.06) benign(0.059) TCGA-BR-4201-01 2 242174626 242174626 G A HDLBP Silent p.I1018I 0.15 TCGA-BR-4201-01 2 24927973 24927973 C T NCOA1 Missense_Mutation p.A323V 0.16 deleterious(0) probably_damaging(0.999) TCGA-BR-4201-01 2 25966041 25966041 G A ASXL2 Silent p.H1055H 0.13 TCGA-BR-4201-01 2 26203385 26203385 G A KIF3C Silent p.L468L 0.14 TCGA-BR-4201-01 2 27559091 27559092 - C GTF3C2 Frame_Shift_Ins p.L444Pfs*23 0.13 TCGA-BR-4201-01 2 27566374 27566374 G A GTF3C2 Silent p.P16P 0.14 TCGA-BR-4201-01 2 27607889 27607889 C T PPM1G Missense_Mutation p.R159H 0.18 deleterious(0) possibly_damaging(0.522) TCGA-BR-4201-01 2 32768566 32768568 CTT - BIRC6 In_Frame_Del p.L4185del 0.15 TCGA-BR-4201-01 2 33810305 33810305 G A FAM98A Silent p.G365G 0.17 TCGA-BR-4201-01 2 36749338 36749338 C T CRIM1 Silent p.D770D 0.25 TCGA-BR-4201-01 2 48873957 48873957 C T STON1-GTF2A1L Nonsense_Mutation p.Q956* 0.11 TCGA-BR-4201-01 2 48914783 48914783 T - LHCGR 3'UTR 0.27 TCGA-BR-4201-01 2 49190038 49190038 A G FSHR Missense_Mutation p.L641P 0.18 deleterious(0) probably_damaging(0.947) TCGA-BR-4201-01 2 55544436 55544436 T - CCDC88A Frame_Shift_Del p.M1217Cfs*4 0.11 TCGA-BR-4201-01 2 61415812 61415812 G A USP34 Missense_Mutation p.R3356C 0.14 deleterious(0) possibly_damaging(0.797) TCGA-BR-4201-01 2 61508298 61508298 C T USP34 Missense_Mutation p.R1693H 0.26 tolerated(0.18) benign(0.043) TCGA-BR-4201-01 2 61633020 61633020 T - USP34 Frame_Shift_Del p.K125Nfs*10 0.23 TCGA-BR-4201-01 2 62066719 62066719 C T FAM161A Missense_Mutation p.A474T 0.21 tolerated(0.2) benign(0.169) TCGA-BR-4201-01 2 62099411 62099411 C T CCT4 Missense_Mutation p.A433T 0.09 deleterious(0) probably_damaging(0.934) TCGA-BR-4201-01 2 62991424 62991424 A - EHBP1 Frame_Shift_Del p.N64Ifs*19 0.21 TCGA-BR-4201-01 2 65571870 65571870 G A SPRED2 Nonsense_Mutation p.R63* 0.11 TCGA-BR-4201-01 2 68408114 68408114 T - PPP3R1 Frame_Shift_Del p.K165Rfs*4 0.22 TCGA-BR-4201-01 2 69015041 69015041 A G ARHGAP25 Missense_Mutation p.E140G 0.15 deleterious(0.01) benign(0.351) TCGA-BR-4201-01 2 71649954 71649954 A - ZNF638 Frame_Shift_Del p.N1105Tfs*77 0.10 TCGA-BR-4201-01 2 71755438 71755438 C T DYSF Silent p.A429A 0.16 TCGA-BR-4201-01 2 73490956 73490956 C - FBXO41 Frame_Shift_Del p.G642Afs*11 0.12 TCGA-BR-4201-01 2 73651726 73651726 T - ALMS1 Frame_Shift_Del p.L313Yfs*18 0.26 TCGA-BR-4201-01 2 73717248 73717248 G A ALMS1 Missense_Mutation p.R2720Q 0.19 benign(0.238) TCGA-BR-4201-01 2 74451994 74451994 T - SLC4A5 Frame_Shift_Del p.A1091Pfs*17 0.17 TCGA-BR-4201-01 2 75929286 75929286 A - GCFC2 Intron 0.09 TCGA-BR-4201-01 2 79384258 79384258 A G REG3A 3'UTR 0.18 TCGA-BR-4201-01 2 84745152 84745152 C T DNAH6 Nonsense_Mutation p.Q68* 0.14 TCGA-BR-4201-01 2 85097639 85097639 G T TRABD2A Missense_Mutation p.L127M 0.27 tolerated(0.06) probably_damaging(1) TCGA-BR-4201-01 2 85836566 85836566 C T C2orf68 Missense_Mutation p.V124I 0.11 tolerated(0.11) probably_damaging(0.965) TCGA-BR-4201-01 2 86705121 86705121 C T KDM3A Silent p.C687C 0.16 TCGA-BR-4201-01 2 95542378 95542378 G A TEKT4 Missense_Mutation p.R391H 0.19 tolerated(0.12) benign(0.036) TCGA-BR-4201-01 2 9611523 9611523 C T CPSF3 Silent p.S636S 0.12 TCGA-BR-4201-01 2 96859067 96859067 T - STARD7 Frame_Shift_Del p.K191Nfs*6 0.17 TCGA-BR-4201-01 2 96993296 96993296 C T ITPRIPL1 Silent p.T317T 0.14 TCGA-BR-4201-01 2 97475139 97475139 C T CNNM4 Missense_Mutation p.T738I 0.27 tolerated(0.15) benign(0.001) TCGA-BR-4201-01 2 97749725 97749725 G - FAHD2B Frame_Shift_Del p.P281Qfs*26 0.33 TCGA-BR-4201-01 2 98201512 98201512 C T ANKRD36B RNA 0.10 TCGA-BR-4201-01 2 98928714 98928714 G A VWA3B Missense_Mutation p.A1263T 0.23 tolerated_low_confidence(0.36) benign(0) TCGA-BR-4201-01 2 98994199 98994199 G A CNGA3 Missense_Mutation p.A51T 0.21 tolerated_low_confidence(0.34) benign(0.002) TCGA-BR-4201-01 2 99785865 99785865 A - MITD1 Frame_Shift_Del p.H242Ifs*12 0.18 TCGA-BR-4201-01 2 99812274 99812274 C T MRPL30 3'UTR 0.20 TCGA-BR-4201-01 3 10119789 10119789 C - FANCD2 Frame_Shift_Del p.P963Lfs*18 0.18 TCGA-BR-4201-01 3 101389917 101389917 C - ZBTB11 Intron 0.20 TCGA-BR-4201-01 3 101451389 101451389 T C CEP97 Missense_Mutation p.C207R 0.12 deleterious(0) probably_damaging(0.993) TCGA-BR-4201-01 3 105250904 105250904 A - ALCAM Frame_Shift_Del p.K153Sfs*34 0.15 TCGA-BR-4201-01 3 111319601 111319601 A G CD96 Silent p.K325K 0.17 TCGA-BR-4201-01 3 111923086 111923086 A - SLC9C1 Frame_Shift_Del p.R718Vfs*9 0.12 TCGA-BR-4201-01 3 112999994 112999994 A G BOC Missense_Mutation p.T809A 0.14 deleterious(0) probably_damaging(0.997) TCGA-BR-4201-01 3 113627946 113627946 A G GRAMD1C Missense_Mutation p.T311A 0.24 tolerated(0.18) benign(0.009) TCGA-BR-4201-01 3 114069597 114069597 C T ZBTB20 Missense_Mutation p.S443N 0.08 tolerated(0.37) benign(0.001) TCGA-BR-4201-01 3 114070442 114070442 G A ZBTB20 Silent p.G161G 0.24 TCGA-BR-4201-01 3 118621438 118621438 C T IGSF11 Missense_Mutation p.A409T 0.14 tolerated(0.09) benign(0.031) TCGA-BR-4201-01 3 118931514 118931514 T C B4GALT4 Missense_Mutation p.H306R 0.22 tolerated(0.66) benign(0.001) TCGA-BR-4201-01 3 119209446 119209448 CCT - POGLUT1 In_Frame_Del p.L283del 0.28 TCGA-BR-4201-01 3 121238922 121238925 AAGT - POLQ Frame_Shift_Del p.T421Lfs*29 0.29 TCGA-BR-4201-01 3 122003470 122003470 G A CASR Missense_Mutation p.R900H 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.708) TCGA-BR-4201-01 3 122629836 122629836 G A SEMA5B Missense_Mutation p.L1104F 0.23 deleterious(0.03) probably_damaging(1) TCGA-BR-4201-01 3 124149556 124149556 T C KALRN Silent p.N919N 0.18 TCGA-BR-4201-01 3 126070789 126070789 G T KLF15 Missense_Mutation p.P326H 0.24 deleterious(0) probably_damaging(0.996) TCGA-BR-4201-01 3 126155213 126155215 AGG - CCDC37 In_Frame_Del p.E605del 0.19 TCGA-BR-4201-01 3 126190875 126190875 A G ZXDC Silent p.C360C 0.20 TCGA-BR-4201-01 3 127786377 127786377 A T SEC61A1 Silent p.V363V 0.22 TCGA-BR-4201-01 3 129152936 129152936 G A MBD4 Silent p.S415S 0.09 TCGA-BR-4201-01 3 130380888 130380888 A G COL6A6 Missense_Mutation p.R2080G 0.15 deleterious(0) probably_damaging(0.999) TCGA-BR-4201-01 3 130422673 130422673 G A PIK3R4 Nonsense_Mutation p.R998* 0.17 TCGA-BR-4201-01 3 131283121 131283121 G A CPNE4 Nonsense_Mutation p.Q334* 0.10 TCGA-BR-4201-01 3 13372050 13372050 T C NUP210 Silent p.L1340L 0.20 TCGA-BR-4201-01 3 13384760 13384760 T C NUP210 Missense_Mutation p.D960G 0.18 deleterious(0) probably_damaging(0.998) TCGA-BR-4201-01 3 134089677 134089677 G - AMOTL2 Frame_Shift_Del p.P200Lfs*19 0.18 TCGA-BR-4201-01 3 135721928 135721928 C T PPP2R3A Missense_Mutation p.P530S 0.09 deleterious_low_confidence(0.04) probably_damaging(0.996) TCGA-BR-4201-01 3 135870314 135870315 TT - MSL2 Frame_Shift_Del p.N470Sfs*16 0.17 TCGA-BR-4201-01 3 136059352 136059352 T C STAG1 Missense_Mutation p.D1218G 0.21 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BR-4201-01 3 136710803 136710804 - G IL20RB Frame_Shift_Ins p.I188Yfs*116 0.14 TCGA-BR-4201-01 3 137484306 137484306 C T SOX14 Missense_Mutation p.T227I 0.15 deleterious(0.01) benign(0.028) TCGA-BR-4201-01 3 139080026 139080026 C T COPB2 Missense_Mutation p.A703T 0.17 tolerated(0.16) probably_damaging(0.938) TCGA-BR-4201-01 3 141164860 141164860 T - ZBTB38 3'UTR 0.11 TCGA-BR-4201-01 3 142176461 142176461 C T ATR Missense_Mutation p.R2547Q 0.19 tolerated(0.05) possibly_damaging(0.649) TCGA-BR-4201-01 3 142216005 142216005 C T ATR Missense_Mutation p.S1863N 0.14 tolerated(0.13) benign(0.049) TCGA-BR-4201-01 3 142261555 142261555 A - ATR Frame_Shift_Del p.F1134Lfs*6 0.21 TCGA-BR-4201-01 3 142521156 142521156 G A TRPC1 Missense_Mutation p.C576Y 0.11 tolerated(0.13) probably_damaging(0.972) TCGA-BR-4201-01 3 142681261 142681261 A G PAQR9 Silent p.I306I 0.10 TCGA-BR-4201-01 3 151164676 151164676 C T IGSF10 Silent p.L1031L 0.09 TCGA-BR-4201-01 3 151598580 151598580 T A SUCNR1 Nonsense_Mutation p.Y83* 0.10 TCGA-BR-4201-01 3 152553661 152553661 C T P2RY1 Silent p.V30V 0.26 TCGA-BR-4201-01 3 15455535 15455535 A - METTL6 Frame_Shift_Del p.F222Lfs*19 0.21 TCGA-BR-4201-01 3 157178127 157178128 - G VEPH1 Frame_Shift_Ins p.V125Sfs*26 0.11 TCGA-BR-4201-01 3 16254150 16254150 C A GALNT15 Silent p.S424S 0.14 TCGA-BR-4201-01 3 169497257 169497257 T A MYNN Missense_Mutation p.I323K 0.10 deleterious(0) probably_damaging(0.996) TCGA-BR-4201-01 3 169664031 169664031 C T RP11-379K17.4 RNA 0.27 TCGA-BR-4201-01 3 17052707 17052707 C T PLCL2 Silent p.S497S 0.18 TCGA-BR-4201-01 3 17415970 17415970 C T TBC1D5 Missense_Mutation p.G272D 0.11 tolerated(0.6) benign(0.01) TCGA-BR-4201-01 3 174951945 174951945 A G NAALADL2 Missense_Mutation p.Q257R 0.14 tolerated(0.16) benign(0.014) TCGA-BR-4201-01 3 183682976 183682976 C T ABCC5 Silent p.T676T 0.21 TCGA-BR-4201-01 3 184040373 184040373 A G EIF4G1 Silent p.A557A 0.19 TCGA-BR-4201-01 3 184299146 184299146 C T EPHB3 Silent p.F946F 0.20 TCGA-BR-4201-01 3 185363401 185363401 C T IGF2BP2 Missense_Mutation p.R573H 0.11 deleterious(0.03) probably_damaging(0.95) TCGA-BR-4201-01 3 185797681 185797681 G A ETV5 Missense_Mutation p.A192V 0.17 tolerated(0.19) benign(0.02) TCGA-BR-4201-01 3 186504931 186504931 A G EIF4A2 Missense_Mutation p.T263A 0.16 deleterious(0.03) benign(0.221) TCGA-BR-4201-01 3 186954151 186954151 C T MASP1 Missense_Mutation p.R503H 0.21 deleterious(0.04) benign(0.06) TCGA-BR-4201-01 3 195506181 195506181 G T MUC4 Silent p.S4090S 0.55 TCGA-BR-4201-01 3 196509566 196509566 C T PAK2 Nonsense_Mutation p.R17* 0.14 TCGA-BR-4201-01 3 196751266 196751266 G - MFI2 Frame_Shift_Del p.T132Rfs*24 0.24 TCGA-BR-4201-01 3 25622154 25622154 A G RARB Missense_Mutation p.T243A 0.15 deleterious(0.03) probably_damaging(0.922) TCGA-BR-4201-01 3 32493946 32493946 G A CMTM7 Silent p.S165S 0.13 TCGA-BR-4201-01 3 32995805 32995805 C T CCR4 Silent p.C297C 0.16 TCGA-BR-4201-01 3 37092047 37092047 G A MLH1 Missense_Mutation p.R725H 0.18 deleterious(0) probably_damaging(0.925) TCGA-BR-4201-01 3 38182330 38182330 C T MYD88 Missense_Mutation p.L264F 0.22 deleterious(0.05) probably_damaging(0.952) TCGA-BR-4201-01 3 38565416 38565416 G A EXOG Missense_Mutation p.V224I 0.22 deleterious(0) probably_damaging(0.998) TCGA-BR-4201-01 3 38936340 38936340 C T SCN11A Missense_Mutation p.R840H 0.14 tolerated(0.94) benign(0.007) TCGA-BR-4201-01 3 39119656 39119656 C T WDR48 Missense_Mutation p.A334V 0.18 tolerated(0.39) benign(0.001) TCGA-BR-4201-01 3 39307048 39307048 C T CX3CR1 Missense_Mutation p.R350H 0.22 tolerated(0.47) benign(0.009) TCGA-BR-4201-01 3 44489280 44489280 G A ZNF445 Missense_Mutation p.T628I 0.15 tolerated(0.11) possibly_damaging(0.803) TCGA-BR-4201-01 3 45527238 45527238 T A LARS2 Missense_Mutation p.V358D 0.15 deleterious(0) possibly_damaging(0.857) TCGA-BR-4201-01 3 45637325 45637325 G - LIMD1 Frame_Shift_Del p.G320Vfs*6 0.19 TCGA-BR-4201-01 3 46560368 46560368 T - LRRC2 3'UTR 0.45 TCGA-BR-4201-01 3 46783906 46783906 T C PRSS45 Silent p.S207S 0.17 TCGA-BR-4201-01 3 47719763 47719763 C T SMARCC1 Missense_Mutation p.R499H 0.16 deleterious(0.01) probably_damaging(0.974) TCGA-BR-4201-01 3 48302376 48302376 G T ZNF589 Missense_Mutation p.R57M 0.16 deleterious(0) probably_damaging(0.951) TCGA-BR-4201-01 3 4856237 4856237 G A ITPR1 Silent p.P2549P 0.26 TCGA-BR-4201-01 3 48698385 48698386 - T CELSR3 Frame_Shift_Ins p.H561Qfs*11 0.16 TCGA-BR-4201-01 3 49059972 49059972 G A NDUFAF3 Splice_Site p.X90_splice 0.15 TCGA-BR-4201-01 3 49149019 49149019 G T USP19 Missense_Mutation p.T1042N 0.15 tolerated(0.59) benign(0.102) TCGA-BR-4201-01 3 49933705 49933705 G A MST1R Missense_Mutation p.R858C 0.15 deleterious(0) possibly_damaging(0.893) TCGA-BR-4201-01 3 50098576 50098576 A - RBM6 Frame_Shift_Del p.K760Nfs*101 0.18 TCGA-BR-4201-01 3 50334066 50334066 G A NAT6 Missense_Mutation p.R299C 0.10 tolerated(0.35) benign(0.002) TCGA-BR-4201-01 3 50369149 50369149 G A RASSF1 Missense_Mutation p.R205C 0.24 deleterious(0.03) possibly_damaging(0.479) TCGA-BR-4201-01 3 50684208 50684209 CA - MAPKAPK3 Frame_Shift_Del p.T290Rfs*68 0.21 TCGA-BR-4201-01 3 51417604 51417605 CC - DOCK3 Frame_Shift_Del p.P1852Sfs*46 0.30 TCGA-BR-4201-01 3 51746888 51746888 C T GRM2 Missense_Mutation p.R284C 0.14 deleterious(0) probably_damaging(0.977) TCGA-BR-4201-01 3 52014951 52014951 C T ABHD14A Missense_Mutation p.R245C 0.15 deleterious(0.03) possibly_damaging(0.606) TCGA-BR-4201-01 3 52400871 52400871 G A DNAH1 Silent p.L1911L 0.16 TCGA-BR-4201-01 3 52437234 52437234 C T BAP1 Missense_Mutation p.V604M 0.11 tolerated(0.11) benign(0.046) TCGA-BR-4201-01 3 52729486 52729486 G A GLT8D1 Nonsense_Mutation p.R255* 0.14 TCGA-BR-4201-01 3 52858944 52858944 C T ITIH4 Missense_Mutation p.A264T 0.18 deleterious(0.04) probably_damaging(1) TCGA-BR-4201-01 3 53529214 53529215 - A CACNA1D Frame_Shift_Ins p.M10Nfs*28 0.14 TCGA-BR-4201-01 3 53766932 53766932 A - CACNA1D Frame_Shift_Del p.I877Lfs*21 0.20 TCGA-BR-4201-01 3 57132279 57132279 G T IL17RD Nonsense_Mutation p.C484* 0.19 TCGA-BR-4201-01 3 57743544 57743544 G A SLMAP Missense_Mutation p.A56T 0.20 deleterious(0) probably_damaging(0.961) TCGA-BR-4201-01 3 62248643 62248643 A G PTPRG Intron 0.25 TCGA-BR-4201-01 3 62253473 62253473 G A PTPRG Silent p.T951T 0.09 TCGA-BR-4201-01 3 62355818 62355818 G A FEZF2 Silent p.H440H 0.15 TCGA-BR-4201-01 3 63466538 63466538 G A SYNPR Missense_Mutation p.G39S 0.17 deleterious(0.04) probably_damaging(1) TCGA-BR-4201-01 3 64547403 64547403 C T ADAMTS9 Missense_Mutation p.V1517I 0.22 tolerated(0.64) benign(0.005) TCGA-BR-4201-01 3 69167997 69167997 T C LMOD3 Silent p.R503R 0.17 TCGA-BR-4201-01 3 7620434 7620434 G A GRM7 Missense_Mutation p.R614H 0.17 deleterious(0.04) probably_damaging(0.998) TCGA-BR-4201-01 3 8669394 8669394 C T SSUH2 Missense_Mutation p.G222S 0.24 deleterious(0) possibly_damaging(0.906) TCGA-BR-4201-01 3 9784848 9784848 A G BRPF1 Missense_Mutation p.Q741R 0.15 deleterious(0) benign(0.268) TCGA-BR-4201-01 3 98001806 98001806 G A OR5H2 Silent p.Q25Q 0.16 TCGA-BR-4201-01 3 9986201 9986201 A G CRELD1 3'UTR 0.13 TCGA-BR-4201-01 4 100205876 100205876 T - ADH1A Frame_Shift_Del p.N115Tfs*3 0.17 TCGA-BR-4201-01 4 106157341 106157341 T A TET2 Missense_Mutation p.L748I 0.19 tolerated(0.06) benign(0.141) TCGA-BR-4201-01 4 113356326 113356326 A - ALPK1 Frame_Shift_Del p.K1021Nfs*18 0.16 TCGA-BR-4201-01 4 113570754 113570754 A - LARP7 Frame_Shift_Del p.T412Qfs*5 0.20 TCGA-BR-4201-01 4 119952870 119952870 A G SYNPO2 Silent p.Q980Q 0.23 TCGA-BR-4201-01 4 120983144 120983144 A C MAD2L1 Silent p.T109T 0.13 TCGA-BR-4201-01 4 122738649 122738649 T C CCNA2 3'UTR 0.25 TCGA-BR-4201-01 4 122770069 122770069 G A BBS7 Silent p.S288S 0.12 TCGA-BR-4201-01 4 123342417 123342418 - C ADAD1 Frame_Shift_Ins p.F499Ifs*2 0.17 TCGA-BR-4201-01 4 123664677 123664677 T - BBS12 Frame_Shift_Del p.L545Cfs*14 0.08 TCGA-BR-4201-01 4 124323363 124323363 G A SPRY1 Missense_Mutation p.R206Q 0.18 tolerated(1) benign(0.267) TCGA-BR-4201-01 4 126370353 126370353 G A FAT4 Missense_Mutation p.V2728I 0.17 benign(0.004) TCGA-BR-4201-01 4 126398366 126398366 C T FAT4 Missense_Mutation p.P4117L 0.11 probably_damaging(0.976) TCGA-BR-4201-01 4 126411789 126411789 C T FAT4 Silent p.T4604T 0.11 TCGA-BR-4201-01 4 128741625 128741625 A - HSPA4L Frame_Shift_Del p.G575Efs*18 0.22 TCGA-BR-4201-01 4 134071537 134071537 G A PCDH10 Missense_Mutation p.R81H 0.11 deleterious(0) probably_damaging(0.998) TCGA-BR-4201-01 4 134072675 134072675 G A PCDH10 Silent p.A460A 0.15 TCGA-BR-4201-01 4 13597501 13597501 C T BOD1L1 Missense_Mutation p.G2696E 0.12 benign(0.004) TCGA-BR-4201-01 4 146041224 146041224 A - ABCE1 Frame_Shift_Del p.M357Wfs*6 0.13 TCGA-BR-4201-01 4 151773292 151773292 C T LRBA Missense_Mutation p.M1190I 0.18 tolerated_low_confidence(0.34) benign(0) TCGA-BR-4201-01 4 152069114 152069114 G - SH3D19 Frame_Shift_Del p.P401Lfs*43 0.18 TCGA-BR-4201-01 4 153271192 153271192 A G FBXW7 Splice_Site p.X195_splice 0.31 TCGA-BR-4201-01 4 153897150 153897150 C T FHDC1 Missense_Mutation p.R903C 0.22 deleterious(0.02) probably_damaging(0.938) TCGA-BR-4201-01 4 154243896 154243896 T C TRIM2 Missense_Mutation p.F627L 0.18 tolerated(0.39) benign(0.203) TCGA-BR-4201-01 4 156289916 156289916 C T MAP9 Missense_Mutation p.R177Q 0.14 tolerated(0.42) benign(0.025) TCGA-BR-4201-01 4 158074033 158074033 C G GLRB Missense_Mutation p.N356K 0.12 tolerated(1) benign(0.055) TCGA-BR-4201-01 4 159092395 159092395 C T FAM198B Missense_Mutation p.A45T 0.31 tolerated(0.14) possibly_damaging(0.682) TCGA-BR-4201-01 4 15964150 15964152 CTT - FGFBP2 In_Frame_Del p.K201del 0.27 TCGA-BR-4201-01 4 15982050 15982050 G A PROM1 Silent p.Y828Y 0.14 TCGA-BR-4201-01 4 164394543 164394544 - G TKTL2 Frame_Shift_Ins p.R115Pfs*6 0.16 TCGA-BR-4201-01 4 165961428 165961428 C - TRIM60 Frame_Shift_Del p.Q70Sfs*5 0.21 TCGA-BR-4201-01 4 169194431 169194431 T C DDX60 Missense_Mutation p.Q858R 0.11 deleterious(0.01) probably_damaging(1) TCGA-BR-4201-01 4 170057551 170057551 G - SH3RF1 Frame_Shift_Del p.P329Lfs*31 0.16 TCGA-BR-4201-01 4 175231102 175231102 T C CEP44 Silent p.C260C 0.32 TCGA-BR-4201-01 4 175598374 175598374 T C GLRA3 Missense_Mutation p.Y261C 0.15 deleterious(0) probably_damaging(1) TCGA-BR-4201-01 4 177100765 177100765 T A WDR17 3'UTR 0.23 TCGA-BR-4201-01 4 177142368 177142368 G A ASB5 Missense_Mutation p.T203I 0.19 deleterious(0.03) benign(0.174) TCGA-BR-4201-01 4 177648991 177648991 A G VEGFC Missense_Mutation p.C165R 0.12 deleterious(0) probably_damaging(1) TCGA-BR-4201-01 4 184368553 184368553 A G CDKN2AIP Silent p.A572A 0.14 TCGA-BR-4201-01 4 184585026 184585026 C T TRAPPC11 Silent p.S2S 0.16 TCGA-BR-4201-01 4 186381064 186381064 G T CCDC110 Missense_Mutation p.T226N 0.07 tolerated(0.34) benign(0.029) TCGA-BR-4201-01 4 187195296 187195296 C A F11 Missense_Mutation p.L118I 0.10 tolerated(0.57) possibly_damaging(0.816) TCGA-BR-4201-01 4 248550 248550 A G ZNF876P RNA 0.12 TCGA-BR-4201-01 4 2673877 2673877 T A FAM193A Nonsense_Mutation p.C412* 0.24 TCGA-BR-4201-01 4 27024459 27024459 C T STIM2 Silent p.R702R 0.16 TCGA-BR-4201-01 4 2831652 2831652 C - SH3BP2 Frame_Shift_Del p.R399Efs*19 0.27 TCGA-BR-4201-01 4 2906508 2906508 C T ADD1 Silent p.Y393Y 0.09 TCGA-BR-4201-01 4 2916624 2916624 C T ADD1 Missense_Mutation p.T571M 0.15 deleterious(0.03) probably_damaging(0.981) TCGA-BR-4201-01 4 30723234 30723234 G A PCDH7 Missense_Mutation p.V64M 0.13 deleterious(0.03) probably_damaging(0.997) TCGA-BR-4201-01 4 30724012 30724012 C T PCDH7 Missense_Mutation p.P323L 0.25 tolerated(0.15) benign(0.21) TCGA-BR-4201-01 4 39505575 39505575 T - UGDH Frame_Shift_Del p.M432Cfs*2 0.18 TCGA-BR-4201-01 4 41016202 41016202 G A APBB2 Missense_Mutation p.A78V 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-BR-4201-01 4 4283520 4283520 G T LYAR Missense_Mutation p.A76E 0.14 tolerated(1) benign(0.049) TCGA-BR-4201-01 4 46976326 46976326 G A GABRA4 Missense_Mutation p.P215L 0.18 deleterious(0) probably_damaging(1) TCGA-BR-4201-01 4 54231634 54231634 A C SCFD2 Missense_Mutation p.L159V 0.10 tolerated(0.55) benign(0.008) TCGA-BR-4201-01 4 5468447 5468447 C T STK32B Silent p.C309C 0.23 TCGA-BR-4201-01 4 5624508 5624508 G A EVC2 Missense_Mutation p.R753C 0.10 deleterious(0.01) probably_damaging(0.964) TCGA-BR-4201-01 4 5754686 5754686 G A EVC Missense_Mutation p.A408T 0.23 tolerated(1) benign(0.003) TCGA-BR-4201-01 4 6377649 6377649 A G PPP2R2C Missense_Mutation p.I115T 0.24 deleterious(0) probably_damaging(0.933) TCGA-BR-4201-01 4 68380266 68380266 C T CENPC Missense_Mutation p.A324T 0.20 tolerated(0.5) benign(0.001) TCGA-BR-4201-01 4 69362685 69362685 C T TMPRSS11E 3'UTR 0.21 TCGA-BR-4201-01 4 71114881 71114881 C T CSN3 Missense_Mutation p.A85V 0.18 tolerated(1) unknown(0) TCGA-BR-4201-01 4 79437097 79437097 C A FRAS1 Missense_Mutation p.T3440N 0.19 benign(0.41) TCGA-BR-4201-01 4 81196142 81196142 A - FGF5 Frame_Shift_Del p.G148Efs*45 0.13 TCGA-BR-4201-01 4 860918 860918 C G GAK Missense_Mutation p.A900P 0.25 tolerated(0.17) benign(0.03) TCGA-BR-4201-01 4 861151 861151 T C GAK Missense_Mutation p.D822G 0.20 tolerated(0.09) benign(0.009) TCGA-BR-4201-01 4 86898809 86898809 G A ARHGAP24 Missense_Mutation p.R298H 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-BR-4201-01 4 88903760 88903760 C T SPP1 Silent p.S219S 0.14 TCGA-BR-4201-01 4 89380513 89380514 - A HERC5 Frame_Shift_Ins p.N96Kfs*25 0.19 TCGA-BR-4201-01 4 89443011 89443011 C T PYURF 3'UTR 0.25 TCGA-BR-4201-01 4 99313170 99313170 C T RAP1GDS1 Silent p.H193H 0.12 TCGA-BR-4201-01 5 100222222 100222222 A G ST8SIA4 Missense_Mutation p.Y110H 0.14 probably_damaging(0.992) TCGA-BR-4201-01 5 10239183 10239183 C T FAM173B Missense_Mutation p.R101H 0.24 deleterious(0.03) possibly_damaging(0.751) TCGA-BR-4201-01 5 102890483 102890483 G A NUDT12 Missense_Mutation p.P346S 0.15 deleterious(0.01) probably_damaging(0.993) TCGA-BR-4201-01 5 111500543 111500543 A G EPB41L4A 3'UTR 0.17 TCGA-BR-4201-01 5 114548010 114548010 A - PGGT1B 3'UTR 0.13 TCGA-BR-4201-01 5 118965518 118965518 G A FAM170A Missense_Mutation p.A19T 0.15 tolerated(0.55) benign(0.016) TCGA-BR-4201-01 5 124036739 124036739 A G ZNF608 Missense_Mutation p.L377S 0.11 deleterious(0) probably_damaging(1) TCGA-BR-4201-01 5 126781226 126781226 G A MEGF10 Missense_Mutation p.G857R 0.19 deleterious(0) possibly_damaging(0.882) TCGA-BR-4201-01 5 127637177 127637177 A - FBN2 Frame_Shift_Del p.F1981Lfs*35 0.20 TCGA-BR-4201-01 5 128983558 128983558 G A ADAMTS19 Missense_Mutation p.G652E 0.06 deleterious(0) probably_damaging(1) TCGA-BR-4201-01 5 130846113 130846113 G A RAPGEF6 Silent p.D233D 0.15 TCGA-BR-4201-01 5 133536739 133536739 C T PPP2CA Silent p.S171S 0.14 TCGA-BR-4201-01 5 135283098 135283098 C T LECT2 Silent p.L126L 0.23 TCGA-BR-4201-01 5 136964110 136964110 G A KLHL3 Silent p.S489S 0.26 TCGA-BR-4201-01 5 137144426 137144426 C T NPY6R RNA 0.10 TCGA-BR-4201-01 5 13845019 13845019 G A DNAH5 Missense_Mutation p.S1733L 0.16 possibly_damaging(0.651) TCGA-BR-4201-01 5 138715412 138715412 C T SLC23A1 Missense_Mutation p.G298S 0.24 tolerated(0.86) benign(0.074) TCGA-BR-4201-01 5 139887448 139887448 C T ANKHD1 Silent p.L1210L 0.18 TCGA-BR-4201-01 5 140176157 140176157 C T PCDHA2 Silent p.S536S 0.21 TCGA-BR-4201-01 5 140181571 140181571 C T PCDHA3 Silent p.T263T 0.12 TCGA-BR-4201-01 5 140182272 140182272 G A PCDHA3 Missense_Mutation p.R497Q 0.24 deleterious_low_confidence(0.02) possibly_damaging(0.691) TCGA-BR-4201-01 5 140188263 140188263 G A PCDHA4 Silent p.R497R 0.19 TCGA-BR-4201-01 5 140203557 140203557 C T PCDHA5 Missense_Mutation p.R733W 0.20 deleterious_low_confidence(0) possibly_damaging(0.738) TCGA-BR-4201-01 5 140209209 140209209 C T PCDHA6 Silent p.H511H 0.16 TCGA-BR-4201-01 5 140209726 140209726 G A PCDHA6 Missense_Mutation p.V684M 0.15 tolerated_low_confidence(0.16) benign(0.052) TCGA-BR-4201-01 5 140215405 140215405 G - PCDHA7 Frame_Shift_Del p.D481Tfs*55 0.10 TCGA-BR-4201-01 5 140263605 140263605 G A PCDHA13 Silent p.S584S 0.19 TCGA-BR-4201-01 5 140264042 140264042 G A PCDHA13 Missense_Mutation p.G730D 0.17 deleterious_low_confidence(0.03) benign(0.008) TCGA-BR-4201-01 5 140579471 140579471 G A PCDHB11 Missense_Mutation p.G42R 0.15 deleterious_low_confidence(0.02) probably_damaging(0.986) TCGA-BR-4201-01 5 140580614 140580614 G A PCDHB11 Missense_Mutation p.V423I 0.17 deleterious_low_confidence(0.03) benign(0.148) TCGA-BR-4201-01 5 140581384 140581384 C A PCDHB11 Silent p.A679A 0.20 TCGA-BR-4201-01 5 140698866 140698866 G A TAF7 Missense_Mutation p.T249M 0.15 tolerated(0.23) benign(0.047) TCGA-BR-4201-01 5 140699557 140699557 G A TAF7 Missense_Mutation p.R19C 0.22 deleterious(0) benign(0.303) TCGA-BR-4201-01 5 140745350 140745350 G A PCDHGA5 Missense_Mutation p.A485T 0.23 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-BR-4201-01 5 140754322 140754322 C T PCDHGA6 Silent p.S224S 0.16 TCGA-BR-4201-01 5 140788483 140788483 C - PCDHGB6 Frame_Shift_Del p.P240Rfs*25 0.15 TCGA-BR-4201-01 5 140802733 140802733 G A PCDHGA11 Missense_Mutation p.V647I 0.15 deleterious_low_confidence(0.01) probably_damaging(0.948) TCGA-BR-4201-01 5 141385882 141385882 C T GNPDA1 Missense_Mutation p.R79Q 0.18 tolerated_low_confidence(0.14) benign(0.007) TCGA-BR-4201-01 5 145883504 145883505 - GA TCERG1 Frame_Shift_Ins p.Q893Sfs*82 0.12 TCGA-BR-4201-01 5 149581961 149581961 G - SLC6A7 Frame_Shift_Del p.L306Sfs*54 0.23 TCGA-BR-4201-01 5 150056388 150056388 G A MYOZ3 Missense_Mutation p.R236K 0.11 deleterious(0) probably_damaging(0.999) TCGA-BR-4201-01 5 153190682 153190682 G T GRIA1 Missense_Mutation p.G883V 0.13 deleterious_low_confidence(0) probably_damaging(1) TCGA-BR-4201-01 5 156589437 156589437 G A FAM71B 3'UTR 0.15 TCGA-BR-4201-01 5 156920119 156920119 C T ADAM19 Silent p.V590V 0.15 TCGA-BR-4201-01 5 159520656 159520656 T - PWWP2A Frame_Shift_Del p.K334Rfs*25 0.19 TCGA-BR-4201-01 5 160113246 160113246 A G ATP10B Silent p.L104L 0.17 TCGA-BR-4201-01 5 160721153 160721153 G A GABRB2 Missense_Mutation p.R492C 0.19 deleterious(0) probably_damaging(1) TCGA-BR-4201-01 5 161520894 161520894 C A GABRG2 Silent p.V56V 0.14 TCGA-BR-4201-01 5 162880969 162880969 G A NUDCD2 3'UTR 0.14 TCGA-BR-4201-01 5 16699619 16699619 G A MYO10 Missense_Mutation p.R1166C 0.22 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-BR-4201-01 5 16764481 16764481 C T MYO10 Missense_Mutation p.A402T 0.22 deleterious(0.01) probably_damaging(0.997) TCGA-BR-4201-01 5 169689854 169689854 T C LCP2 Silent p.P270P 0.08 TCGA-BR-4201-01 5 172659583 172659583 G A NKX2-5 Nonsense_Mutation p.R322* 0.17 TCGA-BR-4201-01 5 173534316 173534316 G A NSG2 Splice_Site p.X109_splice 0.16 TCGA-BR-4201-01 5 176297387 176297387 C T UNC5A Silent p.S246S 0.25 TCGA-BR-4201-01 5 176314232 176314232 G A HK3 Silent p.P569P 0.13 TCGA-BR-4201-01 5 176317898 176317898 C T HK3 Silent p.A153A 0.12 TCGA-BR-4201-01 5 176678848 176678848 C T NSD1 Missense_Mutation p.R1587C 0.15 deleterious(0.04) benign(0.39) TCGA-BR-4201-01 5 176721549 176721549 A G NSD1 Missense_Mutation p.I2394V 0.20 tolerated_low_confidence(1) benign(0) TCGA-BR-4201-01 5 176860178 176860178 T C GRK6 Silent p.P157P 0.15 TCGA-BR-4201-01 5 178699931 178699931 C - ADAMTS2 Frame_Shift_Del p.P224Hfs*23 0.21 TCGA-BR-4201-01 5 180475169 180475169 C T BTNL9 Silent p.L118L 0.18 TCGA-BR-4201-01 5 22078600 22078600 A - CDH12 Frame_Shift_Del p.F62Lfs*21 0.14 TCGA-BR-4201-01 5 31515179 31515179 C T DROSHA Silent p.E402E 0.24 TCGA-BR-4201-01 5 32069705 32069705 G A PDZD2 Missense_Mutation p.A828T 0.17 tolerated(0.14) probably_damaging(0.998) TCGA-BR-4201-01 5 32088835 32088835 A G PDZD2 Missense_Mutation p.S1761G 0.19 tolerated(0.37) benign(0.003) TCGA-BR-4201-01 5 33576232 33576232 A G ADAMTS12 Missense_Mutation p.L1300P 0.21 tolerated(0.18) benign(0.038) TCGA-BR-4201-01 5 36976272 36976272 G A NIPBL Silent p.S421S 0.15 TCGA-BR-4201-01 5 37022373 37022373 C T NIPBL Nonsense_Mutation p.R1819* 0.17 TCGA-BR-4201-01 5 37182875 37182875 T - C5orf42 Frame_Shift_Del p.N1803Mfs*7 0.22 TCGA-BR-4201-01 5 38506042 38506042 G A LIFR Missense_Mutation p.S419L 0.12 deleterious(0.01) possibly_damaging(0.726) TCGA-BR-4201-01 5 38923329 38923329 A - OSMR Frame_Shift_Del p.T617Qfs*20 0.10 TCGA-BR-4201-01 5 38960027 38960028 - T RICTOR Frame_Shift_Ins p.N635Kfs*15 0.12 TCGA-BR-4201-01 5 41382224 41382224 T C PLCXD3 Silent p.P172P 0.16 TCGA-BR-4201-01 5 52369065 52369066 - T ITGA2 Frame_Shift_Ins p.A852Cfs*8 0.15 TCGA-BR-4201-01 5 52402940 52402940 G - MOCS2 Frame_Shift_Del p.P22Hfs*2 0.19 TCGA-BR-4201-01 5 53409092 53409092 A G ARL15 Silent p.T134T 0.19 TCGA-BR-4201-01 5 53751527 53751527 C T HSPB3 5'UTR 0.18 TCGA-BR-4201-01 5 54586096 54586096 T - DHX29 Frame_Shift_Del p.N286Tfs*12 0.13 TCGA-BR-4201-01 5 56177584 56177584 C T MAP3K1 Missense_Mutation p.R853C 0.17 deleterious(0) probably_damaging(0.976) TCGA-BR-4201-01 5 64766684 64766684 A - ADAMTS6 Frame_Shift_Del p.L128* 0.11 TCGA-BR-4201-01 5 70307103 70307104 - G NAIP Frame_Shift_Ins p.K223Qfs*3 0.14 TCGA-BR-4201-01 5 70791221 70791221 A - BDP1 Frame_Shift_Del p.N597Ifs*16 0.22 TCGA-BR-4201-01 5 70840949 70840949 C T BDP1 Missense_Mutation p.T2216I 0.17 tolerated(0.1) benign(0.111) TCGA-BR-4201-01 5 71495820 71495820 G A MAP1B Missense_Mutation p.R2213H 0.18 probably_damaging(0.982) TCGA-BR-4201-01 5 74655088 74655088 G A HMGCR Missense_Mutation p.A751T 0.20 deleterious(0) probably_damaging(0.986) TCGA-BR-4201-01 5 75596664 75596664 T A SV2C Missense_Mutation p.Y583N 0.16 deleterious(0) probably_damaging(1) TCGA-BR-4201-01 5 76788019 76788019 G A WDR41 Silent p.G9G 0.21 TCGA-BR-4201-01 5 78379171 78379171 T C BHMT2 Missense_Mutation p.F252S 0.24 deleterious(0) probably_damaging(0.91) TCGA-BR-4201-01 5 78596523 78596523 A G JMY Missense_Mutation p.Y573C 0.18 deleterious(0) probably_damaging(0.996) TCGA-BR-4201-01 5 81573573 81573573 C T RPS23 Missense_Mutation p.A35T 0.14 tolerated(0.26) benign(0.01) TCGA-BR-4201-01 5 82833950 82833950 G A VCAN Missense_Mutation p.D1710N 0.12 tolerated(0.09) benign(0.372) TCGA-BR-4201-01 5 83402507 83402507 G A EDIL3 Missense_Mutation p.A204V 0.12 deleterious(0.02) probably_damaging(0.996) TCGA-BR-4201-01 5 92923897 92923897 C T NR2F1 Silent p.T246T 0.12 TCGA-BR-4201-01 5 93076234 93076234 C A POU5F2 3'UTR 0.16 TCGA-BR-4201-01 5 95011143 95011143 C T SPATA9 Silent p.A117A 0.16 TCGA-BR-4201-01 5 96097920 96097920 C T ERAP1 3'UTR 0.20 TCGA-BR-4201-01 6 100062101 100062101 C T PRDM13 Silent p.S530S 0.19 TCGA-BR-4201-01 6 100897523 100897523 T C SIM1 Missense_Mutation p.D134G 0.10 deleterious(0.02) probably_damaging(0.995) TCGA-BR-4201-01 6 105606312 105606312 T - POPDC3 3'UTR 0.24 TCGA-BR-4201-01 6 108985560 108985560 C T FOXO3 Silent p.N508N 0.13 TCGA-BR-4201-01 6 109274297 109274297 G A ARMC2 Missense_Mutation p.R553H 0.14 deleterious(0) probably_damaging(0.998) TCGA-BR-4201-01 6 110736691 110736691 T C DDO Missense_Mutation p.Q20R 0.15 tolerated_low_confidence(0.86) benign(0.021) TCGA-BR-4201-01 6 112397615 112397615 C A TUBE1 Missense_Mutation p.E182D 0.11 tolerated(1) benign(0.02) TCGA-BR-4201-01 6 112430768 112430768 G A LAMA4 Missense_Mutation p.R1782C 0.22 tolerated(0.09) possibly_damaging(0.846) TCGA-BR-4201-01 6 116938220 116938220 C T RSPH4A Missense_Mutation p.S145L 0.18 tolerated_low_confidence(0.13) benign(0.006) TCGA-BR-4201-01 6 118786467 118786467 T A CEP85L 3'UTR 0.11 TCGA-BR-4201-01 6 12294303 12294303 T - EDN1 Frame_Shift_Del p.C123Afs*38 0.17 TCGA-BR-4201-01 6 123369846 123369846 G A CLVS2 Missense_Mutation p.R215Q 0.30 deleterious(0.02) benign(0.329) TCGA-BR-4201-01 6 128134568 128134568 T - THEMIS Frame_Shift_Del p.V407Wfs*2 0.17 TCGA-BR-4201-01 6 128297831 128297831 G A PTPRK Missense_Mutation p.R1320W 0.16 deleterious(0) probably_damaging(0.995) TCGA-BR-4201-01 6 130762848 130762848 C T TMEM200A Silent p.S427S 0.20 TCGA-BR-4201-01 6 133783564 133783564 G A EYA4 Missense_Mutation p.V177I 0.26 tolerated(0.36) probably_damaging(0.969) TCGA-BR-4201-01 6 135811861 135811862 - T AHI1 Frame_Shift_Ins p.T12Nfs*6 0.13 TCGA-BR-4201-01 6 138645253 138645253 G A KIAA1244 Missense_Mutation p.E1655K 0.18 deleterious(0.01) benign(0.42) TCGA-BR-4201-01 6 139488112 139488112 C T HECA Silent p.H321H 0.13 TCGA-BR-4201-01 6 139488147 139488147 G - HECA Frame_Shift_Del p.G335Dfs*27 0.23 TCGA-BR-4201-01 6 139591652 139591652 C T TXLNB Missense_Mutation p.A210T 0.22 deleterious(0.02) probably_damaging(0.95) TCGA-BR-4201-01 6 142691377 142691377 A - GPR126 Frame_Shift_Del p.S174Afs*60 0.19 TCGA-BR-4201-01 6 143093401 143093401 G A HIVEP2 Silent p.C825C 0.18 TCGA-BR-4201-01 6 144507854 144507854 C T STX11 Silent p.H30H 0.13 TCGA-BR-4201-01 6 146127423 146127423 A G FBXO30 Missense_Mutation p.V40A 0.13 deleterious(0.03) possibly_damaging(0.739) TCGA-BR-4201-01 6 146247425 146247425 T C SHPRH Missense_Mutation p.H1070R 0.17 deleterious(0) possibly_damaging(0.893) TCGA-BR-4201-01 6 147704088 147704088 C T STXBP5 Missense_Mutation p.A1123V 0.17 deleterious(0.01) benign(0.2) TCGA-BR-4201-01 6 151161754 151161754 C T PLEKHG1 Silent p.L1294L 0.19 TCGA-BR-4201-01 6 157405929 157405929 C T ARID1B Missense_Mutation p.A724V 0.14 probably_damaging(0.998) TCGA-BR-4201-01 6 158490659 158490659 G A SYNJ2 Missense_Mutation p.V632I 0.24 tolerated(0.06) possibly_damaging(0.692) TCGA-BR-4201-01 6 158834180 158834180 C T TULP4 Silent p.Y112Y 0.15 TCGA-BR-4201-01 6 158923412 158923412 G A TULP4 Missense_Mutation p.R906Q 0.25 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-BR-4201-01 6 159178316 159178316 G A SYTL3 Missense_Mutation p.R404Q 0.22 deleterious(0.04) benign(0.337) TCGA-BR-4201-01 6 160227084 160227084 A G PNLDC1 Silent p.E166E 0.26 TCGA-BR-4201-01 6 16143371 16143371 C T MYLIP Silent p.S195S 0.14 TCGA-BR-4201-01 6 161560485 161560485 C T AGPAT4 Silent p.T337T 0.07 TCGA-BR-4201-01 6 16307055 16307055 A - ATXN1 Frame_Shift_Del p.F651Lfs*40 0.18 TCGA-BR-4201-01 6 16328093 16328093 G - ATXN1 Frame_Shift_Del p.P150Qfs*38 0.23 TCGA-BR-4201-01 6 167413569 167413569 T - FGFR1OP Frame_Shift_Del p.L43* 0.14 TCGA-BR-4201-01 6 167721271 167721271 G A UNC93A Silent p.A327A 0.25 TCGA-BR-4201-01 6 168315892 168315892 C T MLLT4 Missense_Mutation p.R775C 0.16 deleterious(0) probably_damaging(0.999) TCGA-BR-4201-01 6 169648753 169648753 G A THBS2 Missense_Mutation p.T123M 0.15 deleterious(0) possibly_damaging(0.79) TCGA-BR-4201-01 6 17837152 17837152 C T KIF13A Missense_Mutation p.R371Q 0.22 deleterious(0.01) probably_damaging(0.997) TCGA-BR-4201-01 6 18122226 18122226 A - NHLRC1 Frame_Shift_Del p.F204Lfs*28 0.13 TCGA-BR-4201-01 6 20481645 20481645 C T E2F3 Silent p.N238N 0.14 TCGA-BR-4201-01 6 20758841 20758841 C T CDKAL1 Missense_Mutation p.R162C 0.14 deleterious(0.02) possibly_damaging(0.67) TCGA-BR-4201-01 6 24653309 24653309 G A TDP2 Nonsense_Mutation p.R237* 0.19 TCGA-BR-4201-01 6 25600624 25600624 A G LRRC16A Missense_Mutation p.S1068G 0.14 tolerated_low_confidence(0.38) benign(0) TCGA-BR-4201-01 6 25619842 25619842 G T LRRC16A 3'UTR 0.20 TCGA-BR-4201-01 6 26017448 26017448 T - HIST1H1A Frame_Shift_Del p.K171Nfs*5 0.11 TCGA-BR-4201-01 6 27775557 27775557 T C HIST1H2BL Missense_Mutation p.Y43C 0.17 deleterious_low_confidence(0) benign(0.366) TCGA-BR-4201-01 6 27806599 27806599 G T HIST1H2BN Missense_Mutation p.G54C 0.18 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-BR-4201-01 6 27925691 27925691 G C OR2B6 Missense_Mutation p.V225L 0.12 deleterious(0.01) possibly_damaging(0.589) TCGA-BR-4201-01 6 30139991 30139991 C T TRIM15 Silent p.Y421Y 0.30 TCGA-BR-4201-01 6 30617500 30617500 A G C6orf136 Missense_Mutation p.S261G 0.10 tolerated_low_confidence(0.06) benign(0.083) TCGA-BR-4201-01 6 31379868 31379868 G - MICA Frame_Shift_Del p.D255Mfs*131 0.19 TCGA-BR-4201-01 6 31541102 31541102 G A LTA Missense_Mutation p.D84N 0.25 tolerated(0.54) probably_damaging(1) TCGA-BR-4201-01 6 31593069 31593069 C T PRRC2A Silent p.P195P 0.27 TCGA-BR-4201-01 6 31627518 31627518 A G C6orf47 Silent p.A69A 0.18 TCGA-BR-4201-01 6 31760564 31760564 A T VARS Missense_Mutation p.S211T 0.10 tolerated(0.22) benign(0.001) TCGA-BR-4201-01 6 31838664 31838664 C T SLC44A4 Missense_Mutation p.A288T 0.17 tolerated(0.25) benign(0.195) TCGA-BR-4201-01 6 31852688 31852688 C T EHMT2 Splice_Site p.X816_splice 0.26 TCGA-BR-4201-01 6 31939920 31939920 C T STK19 Silent p.V49V 0.22 TCGA-BR-4201-01 6 32039796 32039796 C T TNXB Missense_Mutation p.R1654H 0.18 probably_damaging(0.993) TCGA-BR-4201-01 6 32039876 32039876 C A TNXB Missense_Mutation p.Q1627H 0.24 possibly_damaging(0.807) TCGA-BR-4201-01 6 32065871 32065871 T C TNXB Silent p.P35P 0.23 TCGA-BR-4201-01 6 32123717 32123717 C A PPT2 Missense_Mutation p.P174H 0.22 tolerated(0.17) benign(0.003) TCGA-BR-4201-01 6 32135028 32135028 G A EGFL8 Missense_Mutation p.V199M 0.22 tolerated(0.06) probably_damaging(0.998) TCGA-BR-4201-01 6 32159229 32159230 - C GPSM3 Frame_Shift_Ins p.Q133Afs*84 0.27 TCGA-BR-4201-01 6 32159535 32159535 C T GPSM3 Missense_Mutation p.R99H 0.32 deleterious(0.01) probably_damaging(0.964) TCGA-BR-4201-01 6 32168997 32168997 G A NOTCH4 Missense_Mutation p.R1346W 0.35 deleterious(0) possibly_damaging(0.513) TCGA-BR-4201-01 6 32809478 32809478 G T PSMB8 Missense_Mutation p.T191N 0.15 tolerated(0.18) benign(0.077) TCGA-BR-4201-01 6 33133481 33133481 C - COL11A2 Frame_Shift_Del p.G1446Efs*26 0.24 TCGA-BR-4201-01 6 33273073 33273073 G - TAPBP Frame_Shift_Del p.T188Pfs*17 0.27 TCGA-BR-4201-01 6 33608311 33608312 - C ITPR3 Frame_Shift_Ins p.K50* 0.11 TCGA-BR-4201-01 6 33638235 33638235 G A ITPR3 Missense_Mutation p.A775T 0.19 deleterious(0) probably_damaging(1) TCGA-BR-4201-01 6 34826613 34826613 G A UHRF1BP1 Missense_Mutation p.R827H 0.20 deleterious(0.05) benign(0.336) TCGA-BR-4201-01 6 35200656 35200656 G A SCUBE3 Missense_Mutation p.G167S 0.24 deleterious(0.03) possibly_damaging(0.501) TCGA-BR-4201-01 6 38828371 38828371 A G DNAH8 Missense_Mutation p.T1816A 0.11 probably_damaging(0.92) TCGA-BR-4201-01 6 39893563 39893563 C - MOCS1 Frame_Shift_Del p.V93Sfs*3 0.22 TCGA-BR-4201-01 6 41121543 41121543 C T TREML1 Missense_Mutation p.R110K 0.21 tolerated(0.3) benign(0) TCGA-BR-4201-01 6 41558999 41558999 A G FOXP4 Missense_Mutation p.E492G 0.35 deleterious(0) probably_damaging(0.963) TCGA-BR-4201-01 6 42146094 42146094 G A GUCA1A Missense_Mutation p.R93H 0.26 deleterious(0) possibly_damaging(0.892) TCGA-BR-4201-01 6 42883813 42883813 C T PTCRA Silent p.A2A 0.12 TCGA-BR-4201-01 6 43167106 43167106 C T CUL9 Silent p.S1051S 0.18 TCGA-BR-4201-01 6 43167827 43167827 C T CUL9 Missense_Mutation p.T1106I 0.12 tolerated(0.31) benign(0.007) TCGA-BR-4201-01 6 43172148 43172149 - AG CUL9 Frame_Shift_Ins p.T1407Rfs*7 0.13 TCGA-BR-4201-01 6 43322422 43322422 G A ZNF318 Missense_Mutation p.R884C 0.24 probably_damaging(0.998) TCGA-BR-4201-01 6 44219206 44219206 G A HSP90AB1 Missense_Mutation p.R392Q 0.12 deleterious(0.04) probably_damaging(0.999) TCGA-BR-4201-01 6 44376250 44376250 G A CDC5L Missense_Mutation p.E325K 0.17 tolerated(0.16) benign(0.241) TCGA-BR-4201-01 6 4935952 4935952 A G CDYL Missense_Mutation p.T299A 0.22 deleterious(0) probably_damaging(0.999) TCGA-BR-4201-01 6 56382365 56382365 T - DST Frame_Shift_Del p.K3438Nfs*2 0.22 TCGA-BR-4201-01 6 56917834 56917834 T C KIAA1586 Silent p.H179H 0.09 TCGA-BR-4201-01 6 6197549 6197549 A G F13A1 Missense_Mutation p.C375R 0.17 deleterious(0) probably_damaging(0.999) TCGA-BR-4201-01 6 70042837 70042837 T G BAI3 Missense_Mutation p.L1042W 0.14 deleterious(0) probably_damaging(0.999) TCGA-BR-4201-01 6 70990708 70990708 G - COL9A1 Frame_Shift_Del p.P304Rfs*24 0.22 TCGA-BR-4201-01 6 72006380 72006381 - A OGFRL1 Frame_Shift_Ins p.T187Nfs*6 0.12 TCGA-BR-4201-01 6 72011673 72011673 A G OGFRL1 Missense_Mutation p.N426S 0.16 tolerated_low_confidence(0.25) benign(0.292) TCGA-BR-4201-01 6 73110441 73110441 A G RIMS1 3'Flank 0.11 TCGA-BR-4201-01 6 73787159 73787159 G A KCNQ5 Missense_Mutation p.R244H 0.19 deleterious(0) probably_damaging(0.937) TCGA-BR-4201-01 6 76022149 76022149 C T FILIP1 Silent p.P1133P 0.18 TCGA-BR-4201-01 6 84872863 84872863 C A KIAA1009 Missense_Mutation p.G838C 0.14 deleterious(0) probably_damaging(0.999) TCGA-BR-4201-01 6 88391397 88391397 G A AKIRIN2 Missense_Mutation p.P107L 0.13 deleterious(0.05) benign(0.071) TCGA-BR-4201-01 6 88854349 88854349 G A CNR1 Silent p.Y215Y 0.17 TCGA-BR-4201-01 6 90097083 90097083 A - RRAGD Frame_Shift_Del p.F125Lfs*9 0.10 TCGA-BR-4201-01 6 90368572 90368578 TCCTCTT - MDN1 Frame_Shift_Del p.G4926Pfs*194 0.15 TCGA-BR-4201-01 6 90578735 90578735 C T CASP8AP2 RNA 0.12 TCGA-BR-4201-01 6 90660960 90660960 T C BACH2 Missense_Mutation p.I289V 0.13 tolerated(0.57) benign(0.003) TCGA-BR-4201-01 6 91257878 91257878 G A MAP3K7 Missense_Mutation p.A323V 0.08 tolerated(0.11) benign(0.004) TCGA-BR-4201-01 6 99998177 99998177 G T CCNC Nonsense_Mutation p.C149* 0.21 TCGA-BR-4201-01 7 100151089 100151089 C T AGFG2 Missense_Mutation p.P184L 0.14 deleterious(0.05) benign(0.285) TCGA-BR-4201-01 7 100247736 100247736 T A ACTL6B Missense_Mutation p.E131V 0.21 deleterious(0) probably_damaging(0.958) TCGA-BR-4201-01 7 100469244 100469244 C A TRIP6 Missense_Mutation p.P360H 0.22 deleterious(0) probably_damaging(0.949) TCGA-BR-4201-01 7 100610277 100610277 C T MUC3A Missense_Mutation p.H865Y 0.08 deleterious(0) probably_damaging(0.915) TCGA-BR-4201-01 7 101459368 101459368 C T CUX1 Silent p.L20L 0.12 TCGA-BR-4201-01 7 103002424 103002424 C T PSMC2 Missense_Mutation p.A104V 0.20 tolerated(0.25) benign(0.004) TCGA-BR-4201-01 7 103138557 103138557 G A RELN Missense_Mutation p.A2937V 0.14 tolerated(0.14) benign(0.426) TCGA-BR-4201-01 7 106851578 106851578 G A COG5 Missense_Mutation p.T785M 0.20 deleterious(0) possibly_damaging(0.828) TCGA-BR-4201-01 7 112108039 112108039 T - IFRD1 Frame_Shift_Del p.Y306Mfs*7 0.15 TCGA-BR-4201-01 7 112535733 112535733 T - C7orf60 Frame_Shift_Del p.R122Efs*12 0.16 TCGA-BR-4201-01 7 117232480 117232480 C T CFTR Silent p.S753S 0.21 TCGA-BR-4201-01 7 120629693 120629693 G A CPED1 Silent p.V6V 0.15 TCGA-BR-4201-01 7 123267253 123267253 C T ASB15 Silent p.L263L 0.24 TCGA-BR-4201-01 7 12684234 12684235 - A SCIN Frame_Shift_Ins p.D598Rfs*13 0.21 TCGA-BR-4201-01 7 128484899 128484899 G A FLNC Missense_Mutation p.G1127D 0.26 deleterious(0) probably_damaging(1) TCGA-BR-4201-01 7 128486107 128486107 G A FLNC Missense_Mutation p.G1285D 0.24 deleterious(0.01) probably_damaging(0.99) TCGA-BR-4201-01 7 129019487 129019487 G C AHCYL2 Missense_Mutation p.Q124H 0.15 deleterious_low_confidence(0) possibly_damaging(0.707) TCGA-BR-4201-01 7 129096401 129096401 C T STRIP2 Missense_Mutation p.P319L 0.23 deleterious(0.01) probably_damaging(1) TCGA-BR-4201-01 7 130364019 130364019 A G TSGA13 Missense_Mutation p.S121P 0.08 tolerated(0.52) possibly_damaging(0.504) TCGA-BR-4201-01 7 131866287 131866287 G A PLXNA4 Silent p.P1115P 0.22 TCGA-BR-4201-01 7 133906546 133906546 A G LRGUK Missense_Mutation p.H620R 0.13 tolerated(0.5) benign(0.035) TCGA-BR-4201-01 7 134135578 134135578 T C AKR1B1 Missense_Mutation p.Y104C 0.18 deleterious(0.02) possibly_damaging(0.908) TCGA-BR-4201-01 7 134222396 134222396 A - AKR1B10 Frame_Shift_Del p.T244Pfs*6 0.16 TCGA-BR-4201-01 7 136938377 136938377 T - PTN Frame_Shift_Del p.V42* 0.30 TCGA-BR-4201-01 7 137172408 137172408 C T DGKI Missense_Mutation p.R777H 0.16 tolerated(0.06) probably_damaging(0.998) TCGA-BR-4201-01 7 138418958 138418958 C T ATP6V0A4 Silent p.S538S 0.19 TCGA-BR-4201-01 7 138865925 138865925 T A TTC26 Missense_Mutation p.I467N 0.26 deleterious(0) probably_damaging(0.986) TCGA-BR-4201-01 7 140453128 140453128 G A BRAF Nonsense_Mutation p.R603* 0.23 TCGA-BR-4201-01 7 141619203 141619203 T - OR9A4 Frame_Shift_Del p.C179Vfs*23 0.27 TCGA-BR-4201-01 7 141629838 141629838 T C CLEC5A 3'UTR 0.18 TCGA-BR-4201-01 7 142723873 142723873 A G OR9A2 Missense_Mutation p.V116A 0.15 deleterious(0.01) probably_damaging(0.997) TCGA-BR-4201-01 7 144320278 144320278 A G TPK1 Missense_Mutation p.I112T 0.20 tolerated(0.12) possibly_damaging(0.732) TCGA-BR-4201-01 7 148876693 148876693 C T ZNF398 Missense_Mutation p.R577C 0.16 deleterious(0) probably_damaging(1) TCGA-BR-4201-01 7 149129387 149129387 G A ZNF777 Missense_Mutation p.T659M 0.19 deleterious(0) probably_damaging(0.928) TCGA-BR-4201-01 7 149133705 149133705 C T ZNF777 Missense_Mutation p.E434K 0.11 tolerated(0.16) probably_damaging(0.922) TCGA-BR-4201-01 7 149485990 149485990 C T SSPO RNA 0.32 TCGA-BR-4201-01 7 149508064 149508064 C T SSPO RNA 0.30 TCGA-BR-4201-01 7 149547397 149547397 C T ZNF862 Missense_Mutation p.R363W 0.38 tolerated_low_confidence(0.07) benign(0.035) TCGA-BR-4201-01 7 150746179 150746180 - T ASIC3 Frame_Shift_Ins p.H71Pfs*8 0.17 TCGA-BR-4201-01 7 150935265 150935265 G A CHPF2 Missense_Mutation p.R606H 0.09 deleterious(0) probably_damaging(1) TCGA-BR-4201-01 7 15458233 15458233 C T AGMO Missense_Mutation p.A187T 0.10 tolerated(0.07) possibly_damaging(0.864) TCGA-BR-4201-01 7 154862889 154862889 A G HTR5A-AS1 Missense_Mutation p.M42T 0.17 deleterious_low_confidence(0.01) benign(0.092) TCGA-BR-4201-01 7 158734693 158734693 G A WDR60 Silent p.T952T 0.13 TCGA-BR-4201-01 7 22161979 22161979 G A RAPGEF5 3'UTR 0.18 TCGA-BR-4201-01 7 24681374 24681374 A G MPP6 Missense_Mutation p.S53G 0.08 tolerated(0.24) benign(0.008) TCGA-BR-4201-01 7 2740094 2740094 G A AMZ1 Silent p.Q3Q 0.27 TCGA-BR-4201-01 7 27872572 27872572 G A JAZF1 Silent p.H193H 0.32 TCGA-BR-4201-01 7 31592688 31592688 A G CCDC129 Missense_Mutation p.E43G 0.22 tolerated(0.05) benign(0.2) TCGA-BR-4201-01 7 32109997 32109997 C T PDE1C Intron 0.24 TCGA-BR-4201-01 7 33014265 33014265 A - FKBP9 Frame_Shift_Del p.G88Dfs*3 0.17 TCGA-BR-4201-01 7 33078502 33078502 C T NT5C3A Intron 0.36 TCGA-BR-4201-01 7 33427709 33427709 G A BBS9 Missense_Mutation p.A690T 0.11 tolerated(0.09) benign(0.02) TCGA-BR-4201-01 7 35942747 35942747 A - SEPT7 Frame_Shift_Del p.K401Nfs*19 0.19 TCGA-BR-4201-01 7 37052934 37052934 T C ELMO1 Silent p.E469E 0.17 TCGA-BR-4201-01 7 37136300 37136301 - T ELMO1 Frame_Shift_Ins p.H409Afs*2 0.08 TCGA-BR-4201-01 7 40132832 40132832 G C CDK13 Silent p.V1228V 0.16 TCGA-BR-4201-01 7 42005251 42005251 G T GLI3 Silent p.G1140G 0.15 TCGA-BR-4201-01 7 44612618 44612618 C T DDX56 Missense_Mutation p.G85D 0.13 deleterious(0) possibly_damaging(0.632) TCGA-BR-4201-01 7 44713473 44713473 C T OGDH Missense_Mutation p.P241S 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-BR-4201-01 7 44747227 44747228 - C OGDH Frame_Shift_Ins p.N950Qfs*3 0.12 TCGA-BR-4201-01 7 48312265 48312265 A - ABCA13 Frame_Shift_Del p.Q1001Hfs*57 0.17 TCGA-BR-4201-01 7 50467674 50467674 C T IKZF1 Silent p.N261N 0.23 TCGA-BR-4201-01 7 51096609 51096609 G A COBL Silent p.T728T 0.11 TCGA-BR-4201-01 7 6204578 6204578 T - CYTH3 Frame_Shift_Del p.K399Nfs*6 0.20 TCGA-BR-4201-01 7 65419074 65419074 C T VKORC1L1 Silent p.S106S 0.11 TCGA-BR-4201-01 7 6620233 6620233 T C ZDHHC4 Missense_Mutation p.V14A 0.13 deleterious(0) benign(0.185) TCGA-BR-4201-01 7 6731401 6731401 G A ZNF12 Missense_Mutation p.S391L 0.20 tolerated(0.55) probably_damaging(0.986) TCGA-BR-4201-01 7 71036282 71036282 G T WBSCR17 Missense_Mutation p.M325I 0.16 tolerated(0.67) benign(0.124) TCGA-BR-4201-01 7 72988315 72988315 G A TBL2 Silent p.N133N 0.10 TCGA-BR-4201-01 7 73246173 73246173 T A CLDN4 3'UTR 0.18 TCGA-BR-4201-01 7 73778608 73778608 G A CLIP2 Missense_Mutation p.R448H 0.30 deleterious(0) probably_damaging(0.999) TCGA-BR-4201-01 7 7457515 7457515 G - COL28A1 Frame_Shift_Del p.P704Lfs*68 0.20 TCGA-BR-4201-01 7 75053846 75053846 T C POM121C Silent p.S278S 0.17 TCGA-BR-4201-01 7 75959484 75959484 C T YWHAG Missense_Mutation p.V52I 0.11 deleterious_low_confidence(0.02) possibly_damaging(0.658) TCGA-BR-4201-01 7 76062907 76062907 C T ZP3 Missense_Mutation p.A219V 0.20 deleterious(0) probably_damaging(0.985) TCGA-BR-4201-01 7 76891552 76891552 G T CCDC146 Missense_Mutation p.M367I 0.12 tolerated(0.25) benign(0.037) TCGA-BR-4201-01 7 79818534 79818534 A G GNAI1 Missense_Mutation p.D97G 0.07 deleterious(0.01) benign(0.075) TCGA-BR-4201-01 7 82579728 82579728 G A PCLO Silent p.S3392S 0.08 TCGA-BR-4201-01 7 82584025 82584025 G T PCLO Missense_Mutation p.P2082T 0.16 unknown(0) TCGA-BR-4201-01 7 83764138 83764138 T A SEMA3A Missense_Mutation p.D81V 0.16 tolerated(0.1) benign(0.211) TCGA-BR-4201-01 7 86817444 86817444 A - DMTF1 Frame_Shift_Del p.N415Tfs*28 0.20 TCGA-BR-4201-01 7 87196110 87196110 C T ABCB1 Missense_Mutation p.R174Q 0.33 deleterious(0) probably_damaging(0.954) TCGA-BR-4201-01 7 88964957 88964957 G A ZNF804B Silent p.R887R 0.08 TCGA-BR-4201-01 7 89790129 89790129 C T STEAP1 Missense_Mutation p.T32M 0.08 tolerated_low_confidence(0.2) benign(0.006) TCGA-BR-4201-01 7 92146932 92146932 G A PEX1 Silent p.N299N 0.25 TCGA-BR-4201-01 7 92163897 92163897 T C RBM48 Silent p.C210C 0.10 TCGA-BR-4201-01 7 92848540 92848540 G A HEPACAM2 Missense_Mutation p.P102S 0.18 deleterious(0.04) probably_damaging(0.995) TCGA-BR-4201-01 7 92882054 92882054 T C CCDC132 Missense_Mutation p.V64A 0.15 tolerated(0.69) benign(0.002) TCGA-BR-4201-01 7 939112 939112 G A ADAP1 Missense_Mutation p.R271W 0.27 deleterious(0) possibly_damaging(0.679) TCGA-BR-4201-01 7 94184921 94184921 G A CASD1 Missense_Mutation p.A749T 0.10 deleterious(0) probably_damaging(0.999) TCGA-BR-4201-01 7 94252690 94252690 C T SGCE Missense_Mutation p.R137H 0.19 tolerated(0.41) probably_damaging(0.966) TCGA-BR-4201-01 7 95157266 95157266 C - ASB4 Frame_Shift_Del p.L212Wfs*59 0.17 TCGA-BR-4201-01 7 97823050 97823050 G A LMTK2 Silent p.T1091T 0.18 TCGA-BR-4201-01 7 97872868 97872868 G A TECPR1 Missense_Mutation p.P190S 0.24 deleterious(0.01) possibly_damaging(0.842) TCGA-BR-4201-01 7 99998688 99998688 C T ZCWPW1 Silent p.Q632Q 0.16 TCGA-BR-4201-01 8 100568810 100568810 C T VPS13B Silent p.V1651V 0.13 TCGA-BR-4201-01 8 100673594 100673595 CT - VPS13B Frame_Shift_Del p.L2000Afs*2 0.14 TCGA-BR-4201-01 8 101300355 101300355 C T RNF19A Silent p.L16L 0.31 TCGA-BR-4201-01 8 103289349 103289349 T - UBR5 Frame_Shift_Del p.E2121Kfs*28 0.25 TCGA-BR-4201-01 8 104178480 104178480 G A BAALC Intron 0.38 TCGA-BR-4201-01 8 104412557 104412557 G A SLC25A32 3'UTR 0.29 TCGA-BR-4201-01 8 10470460 10470460 C - RP1L1 Frame_Shift_Del p.G383Dfs*107 0.16 TCGA-BR-4201-01 8 10470757 10470757 G - RP1L1 Frame_Shift_Del p.P284Rfs*26 0.41 TCGA-BR-4201-01 8 107718844 107718844 G A OXR1 Silent p.A366A 0.22 TCGA-BR-4201-01 8 109248393 109248393 A G EIF3E Silent p.H121H 0.19 TCGA-BR-4201-01 8 110510979 110510979 A G PKHD1L1 Missense_Mutation p.S3603G 0.08 tolerated(0.29) benign(0.001) TCGA-BR-4201-01 8 113841970 113841970 T C CSMD3 Missense_Mutation p.T602A 0.10 deleterious(0.01) possibly_damaging(0.547) TCGA-BR-4201-01 8 116427198 116427198 G A TRPS1 Nonsense_Mutation p.Q980* 0.16 TCGA-BR-4201-01 8 116599384 116599384 G A TRPS1 Silent p.A848A 0.17 TCGA-BR-4201-01 8 117658816 117658816 A G EIF3H Silent p.N285N 0.25 TCGA-BR-4201-01 8 118170036 118170036 G A SLC30A8 Silent p.A175A 0.17 TCGA-BR-4201-01 8 118184853 118184853 C T SLC30A8 Missense_Mutation p.T348I 0.30 deleterious(0) possibly_damaging(0.811) TCGA-BR-4201-01 8 118817060 118817060 A G EXT1 Silent p.C652C 0.30 TCGA-BR-4201-01 8 120886177 120886177 G A DEPTOR Missense_Mutation p.A31T 0.12 deleterious(0.02) benign(0.156) TCGA-BR-4201-01 8 121256225 121256225 C T COL14A1 Silent p.S819S 0.16 TCGA-BR-4201-01 8 122627011 122627011 G A HAS2 Nonsense_Mutation p.R333* 0.11 TCGA-BR-4201-01 8 124221696 124221697 - A FAM83A 3'UTR 0.12 TCGA-BR-4201-01 8 124663889 124663889 G A KLHL38 Silent p.V426V 0.12 TCGA-BR-4201-01 8 124824810 124824810 C A FAM91A1 Missense_Mutation p.L795I 0.23 tolerated(0.28) benign(0.002) TCGA-BR-4201-01 8 125074138 125074138 G A FER1L6 Missense_Mutation p.V1065M 0.09 deleterious(0) probably_damaging(0.993) TCGA-BR-4201-01 8 125597329 125597329 T - MTSS1 Frame_Shift_Del p.R155Efs*34 0.15 TCGA-BR-4201-01 8 12957788 12957788 C T DLC1 Silent p.A686A 0.27 TCGA-BR-4201-01 8 133899619 133899619 C T TG Missense_Mutation p.R668C 0.13 deleterious(0.04) probably_damaging(0.912) TCGA-BR-4201-01 8 134237718 134237718 G - WISP1 Frame_Shift_Del p.V234Sfs*50 0.42 TCGA-BR-4201-01 8 135649947 135649947 C T ZFAT Missense_Mutation p.V69I 0.27 tolerated(0.19) possibly_damaging(0.708) TCGA-BR-4201-01 8 136594174 136594174 C T KHDRBS3 Missense_Mutation p.T222M 0.19 deleterious(0) possibly_damaging(0.534) TCGA-BR-4201-01 8 141567204 141567204 G C AGO2 Missense_Mutation p.T337S 0.25 tolerated(0.08) possibly_damaging(0.496) TCGA-BR-4201-01 8 142186732 142186732 C T DENND3 Missense_Mutation p.P780S 0.18 deleterious(0.03) probably_damaging(1) TCGA-BR-4201-01 8 144942358 144942358 G A EPPK1 Silent p.G1688G 0.45 TCGA-BR-4201-01 8 145637952 145637954 CAG - SLC39A4 In_Frame_Del p.L638del 0.27 TCGA-BR-4201-01 8 145745377 145745377 C A LRRC14 Missense_Mutation p.L90M 0.12 tolerated(0.13) possibly_damaging(0.719) TCGA-BR-4201-01 8 145771022 145771022 C T ARHGAP39 Missense_Mutation p.R711Q 0.14 deleterious(0) probably_damaging(0.966) TCGA-BR-4201-01 8 145999587 145999587 T - ZNF34 Frame_Shift_Del p.K249Nfs*75 0.11 TCGA-BR-4201-01 8 146067051 146067052 - AG ZNF7 Frame_Shift_Ins p.G188Rfs*103 0.17 TCGA-BR-4201-01 8 17611860 17611860 G C MTUS1 Missense_Mutation p.T486R 0.04 deleterious(0) possibly_damaging(0.77) TCGA-BR-4201-01 8 20107206 20107206 C A LZTS1 3'UTR 0.14 TCGA-BR-4201-01 8 21848376 21848376 C T XPO7 Missense_Mutation p.R663W 0.17 deleterious(0.03) possibly_damaging(0.603) TCGA-BR-4201-01 8 21857142 21857142 C T XPO7 Silent p.I913I 0.32 TCGA-BR-4201-01 8 21996976 21996976 G A REEP4 Missense_Mutation p.R124W 0.17 deleterious(0) probably_damaging(0.978) TCGA-BR-4201-01 8 22058706 22058706 C - BMP1 Intron 0.11 TCGA-BR-4201-01 8 22147407 22147407 A G PIWIL2 Missense_Mutation p.D345G 0.21 deleterious(0.01) probably_damaging(0.937) TCGA-BR-4201-01 8 22210726 22210726 G A PIWIL2 Splice_Site p.X886_splice 0.31 TCGA-BR-4201-01 8 22463333 22463333 G A CCAR2 Missense_Mutation p.R16H 0.13 deleterious_low_confidence(0.02) possibly_damaging(0.563) TCGA-BR-4201-01 8 22864897 22864897 C T RHOBTB2 Missense_Mutation p.P402L 0.32 tolerated(0.14) benign(0.004) TCGA-BR-4201-01 8 24813156 24813156 C T CTD-2168K21.2 5'Flank 0.33 TCGA-BR-4201-01 8 26501484 26501484 G A DPYSL2 Silent p.T329T 0.30 TCGA-BR-4201-01 8 26501587 26501587 G A DPYSL2 Missense_Mutation p.V364I 0.17 tolerated(0.36) benign(0.024) TCGA-BR-4201-01 8 27303434 27303434 C T PTK2B Missense_Mutation p.R780W 0.16 deleterious(0.01) possibly_damaging(0.871) TCGA-BR-4201-01 8 29005050 29005050 C T KIF13B Missense_Mutation p.R628H 0.09 deleterious(0) benign(0.216) TCGA-BR-4201-01 8 3008925 3008925 C T CSMD1 Missense_Mutation p.G2009S 0.14 probably_damaging(1) TCGA-BR-4201-01 8 37729658 37729660 GGA - RAB11FIP1 In_Frame_Del p.L887del 0.13 TCGA-BR-4201-01 8 39068795 39068795 C T ADAM32 Silent p.G395G 0.35 TCGA-BR-4201-01 8 39495209 39495209 G T ADAM18 Missense_Mutation p.A272S 0.23 tolerated(0.09) possibly_damaging(0.755) TCGA-BR-4201-01 8 42023047 42023047 C T AP3M2 Missense_Mutation p.R258C 0.31 tolerated(0.08) benign(0.052) TCGA-BR-4201-01 8 48690324 48690324 G A PRKDC Missense_Mutation p.R3988W 0.25 probably_damaging(0.998) TCGA-BR-4201-01 8 49647682 49647682 G A EFCAB1 Missense_Mutation p.T10M 0.09 tolerated(0.11) possibly_damaging(0.66) TCGA-BR-4201-01 8 52321554 52321554 G A PXDNL Missense_Mutation p.T877M 0.16 tolerated(0.12) benign(0.001) TCGA-BR-4201-01 8 52321594 52321594 G A PXDNL Missense_Mutation p.R864C 0.33 deleterious(0.03) possibly_damaging(0.55) TCGA-BR-4201-01 8 53853442 53853442 C T NPBWR1 Silent p.R325R 0.32 TCGA-BR-4201-01 8 55533986 55533986 C T RP1 Missense_Mutation p.R154W 0.20 deleterious(0) probably_damaging(0.999) TCGA-BR-4201-01 8 61765392 61765392 G A CHD7 Silent p.P2036P 0.14 TCGA-BR-4201-01 8 6302423 6302423 C T MCPH1 Silent p.L394L 0.33 TCGA-BR-4201-01 8 65528706 65528706 T - CYP7B1 Frame_Shift_Del p.N131Ifs*4 0.36 TCGA-BR-4201-01 8 67369347 67369347 A G ADHFE1 Missense_Mutation p.T370A 0.09 tolerated(0.11) benign(0.002) TCGA-BR-4201-01 8 70514026 70514026 T - SULF1 Frame_Shift_Del p.F343Lfs*7 0.27 TCGA-BR-4201-01 8 71068296 71068296 T C NCOA2 Silent p.R768R 0.14 TCGA-BR-4201-01 8 71068364 71068364 G A NCOA2 Missense_Mutation p.R746C 0.25 deleterious(0) probably_damaging(1) TCGA-BR-4201-01 8 72946564 72946564 T C TRPA1 Silent p.K868K 0.06 TCGA-BR-4201-01 8 75171672 75171672 G A JPH1 Silent p.C402C 0.09 TCGA-BR-4201-01 8 77768354 77768354 G A ZFHX4 Missense_Mutation p.R3066H 0.33 probably_damaging(0.99) TCGA-BR-4201-01 8 86572786 86572786 G A REXO1L1P 3'UTR 0.09 TCGA-BR-4201-01 8 87060712 87060712 C T PSKH2 Silent p.S379S 0.13 TCGA-BR-4201-01 8 89053678 89053678 A G MMP16 3'UTR 0.16 TCGA-BR-4201-01 8 93026963 93026963 A G RUNX1T1 Silent p.S115S 0.28 TCGA-BR-4201-01 8 95272569 95272569 G A GEM Missense_Mutation p.R55C 0.50 deleterious(0.01) possibly_damaging(0.858) TCGA-BR-4201-01 8 95900288 95900288 T C CCNE2 Missense_Mutation p.Y156C 0.09 deleterious(0) probably_damaging(0.999) TCGA-BR-4201-01 8 96059246 96059246 A G NDUFAF6 Missense_Mutation p.H202R 0.12 deleterious(0) probably_damaging(0.99) TCGA-BR-4201-01 9 100433488 100433488 T - NCBP1 3'UTR 0.18 TCGA-BR-4201-01 9 100854204 100854204 C T TRIM14 Silent p.S260S 0.12 TCGA-BR-4201-01 9 100887136 100887136 G A CORO2A Silent p.L500L 0.33 TCGA-BR-4201-01 9 103035322 103035322 T C INVS Missense_Mutation p.M583T 0.10 deleterious(0) probably_damaging(0.997) TCGA-BR-4201-01 9 104312994 104312994 C T RNF20 Missense_Mutation p.A400V 0.17 deleterious(0.01) possibly_damaging(0.483) TCGA-BR-4201-01 9 105767799 105767799 G A CYLC2 Missense_Mutation p.A296T 0.13 tolerated(0.29) unknown(0) TCGA-BR-4201-01 9 107645350 107645350 T A ABCA1 Missense_Mutation p.T131S 0.14 tolerated(0.53) benign(0.001) TCGA-BR-4201-01 9 111741587 111741587 G A CTNNAL1 Nonsense_Mutation p.Q359* 0.11 TCGA-BR-4201-01 9 116079127 116079127 C T WDR31 Missense_Mutation p.A336T 0.15 tolerated(0.82) benign(0) TCGA-BR-4201-01 9 116241776 116241776 C A RGS3 Missense_Mutation p.L141M 0.11 deleterious(0) probably_damaging(0.999) TCGA-BR-4201-01 9 117619 117619 G A FOXD4 Silent p.R167R 0.08 TCGA-BR-4201-01 9 117848173 117848173 C T TNC Missense_Mutation p.E613K 0.23 deleterious(0) benign(0.108) TCGA-BR-4201-01 9 119144763 119144763 G - PAPPA Frame_Shift_Del p.T1590Pfs*59 0.13 TCGA-BR-4201-01 9 123253654 123253654 T - CDK5RAP2 Frame_Shift_Del p.K471Nfs*8 0.14 TCGA-BR-4201-01 9 125140783 125140783 G A PTGS1 Missense_Mutation p.G95R 0.16 tolerated(0.09) benign(0.23) TCGA-BR-4201-01 9 125681367 125681367 G A ZBTB26 Missense_Mutation p.R283C 0.18 deleterious(0.02) benign(0.052) TCGA-BR-4201-01 9 126777589 126777589 C T LHX2 Missense_Mutation p.A171V 0.19 tolerated(0.55) benign(0.094) TCGA-BR-4201-01 9 127455987 127455987 C T NR6A1 Intron 0.18 TCGA-BR-4201-01 9 127637424 127637424 C T ARPC5L Silent p.H131H 0.20 TCGA-BR-4201-01 9 128322020 128322020 G - MAPKAP1 Frame_Shift_Del p.P247Rfs*27 0.32 TCGA-BR-4201-01 9 129154437 129154437 C T MVB12B Missense_Mutation p.R168W 0.24 deleterious(0) probably_damaging(0.996) TCGA-BR-4201-01 9 129642791 129642791 G A ZBTB34 Silent p.P367P 0.33 TCGA-BR-4201-01 9 130271277 130271277 C T FAM129B Missense_Mutation p.R432Q 0.17 deleterious(0.01) probably_damaging(0.992) TCGA-BR-4201-01 9 130493798 130493798 A C TTC16 3'UTR 0.29 TCGA-BR-4201-01 9 130886796 130886796 C T PTGES2 Missense_Mutation p.A171T 0.21 tolerated(0.13) possibly_damaging(0.811) TCGA-BR-4201-01 9 131071808 131071808 C T TRUB2 3'UTR 0.20 TCGA-BR-4201-01 9 131221920 131221920 C A ODF2 Missense_Mutation p.P36H 0.14 deleterious_low_confidence(0) possibly_damaging(0.86) TCGA-BR-4201-01 9 131396155 131396155 C T WDR34 Silent p.Q493Q 0.14 TCGA-BR-4201-01 9 131708027 131708027 T C DOLK Missense_Mutation p.Y519C 0.20 deleterious(0) probably_damaging(0.939) TCGA-BR-4201-01 9 131771036 131771036 G A SH3GLB2 Missense_Mutation p.P372L 0.09 deleterious(0) possibly_damaging(0.904) TCGA-BR-4201-01 9 131777085 131777085 G A SH3GLB2 Missense_Mutation p.R145C 0.20 deleterious(0) probably_damaging(0.992) TCGA-BR-4201-01 9 131870275 131870275 G A CRAT Missense_Mutation p.R37W 0.11 deleterious(0.04) possibly_damaging(0.854) TCGA-BR-4201-01 9 132630629 132630629 G A USP20 Missense_Mutation p.E346K 0.12 tolerated(0.44) possibly_damaging(0.455) TCGA-BR-4201-01 9 133951290 133951290 G A LAMC3 Silent p.A1189A 0.27 TCGA-BR-4201-01 9 134074323 134074323 G A NUP214 Silent p.Q1814Q 0.23 TCGA-BR-4201-01 9 134459910 134459910 T C RAPGEF1 Missense_Mutation p.M935V 0.22 deleterious(0) benign(0.358) TCGA-BR-4201-01 9 135201786 135201786 C T SETX Silent p.V1733V 0.15 TCGA-BR-4201-01 9 135251410 135251410 G A TTF1 Silent p.D870D 0.19 TCGA-BR-4201-01 9 135277202 135277202 T - TTF1 Frame_Shift_Del p.K336Rfs*87 0.14 TCGA-BR-4201-01 9 135487481 135487481 C T DDX31 Missense_Mutation p.V768M 0.19 tolerated(0.28) benign(0.004) TCGA-BR-4201-01 9 136268949 136268949 C T C9orf96 Silent p.L534L 0.21 TCGA-BR-4201-01 9 136320407 136320407 T G ADAMTS13 Missense_Mutation p.C1084G 0.14 deleterious(0) probably_damaging(0.996) TCGA-BR-4201-01 9 136403509 136403509 C T ADAMTSL2 Missense_Mutation p.T91M 0.15 deleterious(0.05) possibly_damaging(0.803) TCGA-BR-4201-01 9 136637093 136637093 G A VAV2 Silent p.F737F 0.15 TCGA-BR-4201-01 9 138713422 138713422 C T CAMSAP1 Missense_Mutation p.E1029K 0.10 deleterious(0.02) possibly_damaging(0.842) TCGA-BR-4201-01 9 139276396 139276396 G A SNAPC4 Missense_Mutation p.H733Y 0.21 tolerated(0.08) benign(0.248) TCGA-BR-4201-01 9 139391870 139391870 G A NOTCH1 Silent p.H2107H 0.13 TCGA-BR-4201-01 9 139820309 139820309 G A TRAF2 Missense_Mutation p.D488N 0.18 deleterious(0) possibly_damaging(0.888) TCGA-BR-4201-01 9 140469211 140469211 T - DPH7 Frame_Shift_Del p.T154Lfs*9 0.19 TCGA-BR-4201-01 9 14789027 14789028 GT - FREM1 Frame_Shift_Del p.T1356Rfs*10 0.37 TCGA-BR-4201-01 9 15459986 15459986 A - SNAPC3 3'UTR 0.35 TCGA-BR-4201-01 9 17394855 17394855 A G CNTLN Silent p.S801S 0.18 TCGA-BR-4201-01 9 2717721 2717721 G A KCNV2 5'UTR 0.19 TCGA-BR-4201-01 9 2804407 2804408 - T KIAA0020 Frame_Shift_Ins p.S624Kfs*21 0.17 TCGA-BR-4201-01 9 32431791 32431791 C T ACO1 Missense_Mutation p.R601C 0.16 deleterious(0.01) benign(0.078) TCGA-BR-4201-01 9 32633025 32633025 T - TAF1L Frame_Shift_Del p.A852Pfs*14 0.13 TCGA-BR-4201-01 9 33932594 33932594 G A UBAP2 Missense_Mutation p.A714V 0.12 tolerated(0.12) unknown(0) TCGA-BR-4201-01 9 35044408 35044408 A - C9orf131 Frame_Shift_Del p.N596Tfs*32 0.15 TCGA-BR-4201-01 9 35089116 35089116 C T PIGO Silent p.R1081R 0.21 TCGA-BR-4201-01 9 35095095 35095095 G A PIGO Silent p.H156H 0.21 TCGA-BR-4201-01 9 35736505 35736506 TG - CREB3 Frame_Shift_Del p.V301Tfs*30 0.25 TCGA-BR-4201-01 9 35738573 35738574 - T GBA2 Frame_Shift_Ins p.N668Kfs*10 0.15 TCGA-BR-4201-01 9 35842713 35842713 C T TMEM8B Missense_Mutation p.A93V 0.22 tolerated(0.41) benign(0) TCGA-BR-4201-01 9 37537214 37537214 G A FBXO10 Missense_Mutation p.R438W 0.20 deleterious(0) possibly_damaging(0.863) TCGA-BR-4201-01 9 43625115 43625115 T - SPATA31A6 Frame_Shift_Del p.N1191Tfs*16 0.16 TCGA-BR-4201-01 9 43626885 43626885 T - SPATA31A6 Frame_Shift_Del p.K601Sfs*19 0.11 TCGA-BR-4201-01 9 70993145 70993145 A G PGM5 Missense_Mutation p.I98V 0.07 deleterious(0.01) possibly_damaging(0.573) TCGA-BR-4201-01 9 711074 711075 - C KANK1 Frame_Shift_Ins p.N105Qfs*47 0.15 TCGA-BR-4201-01 9 711849 711849 G A KANK1 Silent p.T361T 0.10 TCGA-BR-4201-01 9 74309467 74309467 A G TMEM2 Silent p.P1218P 0.21 TCGA-BR-4201-01 9 8518269 8518269 C T PTPRD Silent p.A374A 0.15 TCGA-BR-4201-01 9 90502650 90502650 T C SPATA31E1 Missense_Mutation p.V1083A 0.14 tolerated(0.4) benign(0.155) TCGA-BR-4201-01 9 91616512 91616512 G A S1PR3 Missense_Mutation p.A133T 0.36 deleterious(0) probably_damaging(0.995) TCGA-BR-4201-01 9 96097723 96097723 C T C9orf129 Missense_Mutation p.A100T 0.30 tolerated_low_confidence(0.28) possibly_damaging(0.695) TCGA-BR-4201-01 9 97869413 97869413 G A FANCC Missense_Mutation p.L490F 0.15 deleterious(0) probably_damaging(1) TCGA-BR-4201-01 9 990216 990216 C T DMRT3 Silent p.N210N 0.26 TCGA-BR-4201-01 9 99581109 99581109 C T ZNF782 Missense_Mutation p.C399Y 0.16 deleterious(0.03) probably_damaging(1) TCGA-BR-4201-01 X 100169759 100169759 G A XKRX Silent p.V306V 0.22 TCGA-BR-4201-01 X 102317777 102317777 G A BEX1 3'UTR 0.21 TCGA-BR-4201-01 X 105066733 105066733 C T NRK 5'UTR 0.33 TCGA-BR-4201-01 X 110644445 110644445 G - DCX Frame_Shift_Del p.Q241Sfs*30 0.17 TCGA-BR-4201-01 X 112035060 112035060 C A AMOT Missense_Mutation p.Q642H 0.17 unknown(0) TCGA-BR-4201-01 X 117722266 117722266 C T DOCK11 Silent p.S654S 0.17 TCGA-BR-4201-01 X 122805587 122805587 G C THOC2 Missense_Mutation p.S265C 0.24 deleterious(0) probably_damaging(0.997) TCGA-BR-4201-01 X 123156424 123156424 G A STAG2 5'UTR 0.25 TCGA-BR-4201-01 X 123505321 123505321 C T SH2D1A 3'UTR 0.22 TCGA-BR-4201-01 X 12939516 12939516 G T TLR8 Missense_Mutation p.W786L 0.23 deleterious(0) probably_damaging(1) TCGA-BR-4201-01 X 131208340 131208340 G T MST4 3'UTR 0.16 TCGA-BR-4201-01 X 149639052 149639052 A G MAMLD1 Missense_Mutation p.M378V 0.26 tolerated(0.32) benign(0.023) TCGA-BR-4201-01 X 153050422 153050422 G A SRPK3 Missense_Mutation p.E464K 0.18 deleterious(0.01) possibly_damaging(0.585) TCGA-BR-4201-01 X 153296471 153296471 G A MECP2 Nonsense_Mutation p.R282* 0.21 TCGA-BR-4201-01 X 15543416 15543416 G A BMX Missense_Mutation p.S253N 0.10 tolerated(0.4) benign(0.001) TCGA-BR-4201-01 X 15585915 15585915 C T ACE2 Missense_Mutation p.R644Q 0.14 tolerated(0.42) benign(0.014) TCGA-BR-4201-01 X 17705908 17705908 C T NHS Silent p.R204R 0.23 TCGA-BR-4201-01 X 22117151 22117151 G A PHEX Missense_Mutation p.V321I 0.22 tolerated(0.61) benign(0.153) TCGA-BR-4201-01 X 2407303 2407303 G A ZBED1 Silent p.S486S 0.14 TCGA-BR-4201-01 X 27997798 27997798 C T DCAF8L1 Missense_Mutation p.V552M 0.16 tolerated(1) benign(0.001) TCGA-BR-4201-01 X 30577555 30577555 G A CXorf21 3'UTR 0.21 TCGA-BR-4201-01 X 306335 306335 C T PPP2R3B Missense_Mutation p.V318I 0.28 deleterious(0) probably_damaging(0.999) TCGA-BR-4201-01 X 31676228 31676228 T G DMD Missense_Mutation p.N2636H 0.20 possibly_damaging(0.844) TCGA-BR-4201-01 X 31792185 31792185 A G DMD Silent p.A2478A 0.09 TCGA-BR-4201-01 X 47098875 47098875 C T USP11 Missense_Mutation p.R181C 0.23 deleterious(0) probably_damaging(0.993) TCGA-BR-4201-01 X 49459349 49459349 A G PAGE1 Missense_Mutation p.Y9H 0.20 tolerated(0.07) probably_damaging(0.961) TCGA-BR-4201-01 X 53228052 53228052 A G KDM5C Silent p.D754D 0.10 TCGA-BR-4201-01 X 75650343 75650343 A - MAGEE1 Frame_Shift_Del p.I675Yfs*113 0.19 TCGA-BR-4201-01 X 92964950 92964950 A - FAM133A Frame_Shift_Del p.R180Efs*43 0.22 TCGA-BR-4253-01 10 108459010 108459010 T C SORCS1 Missense_Mutation p.R459G 0.16 tolerated(0.08) benign(0.042) TCGA-BR-4253-01 10 115959035 115959035 C T TDRD1 Missense_Mutation p.P163L 0.22 tolerated(0.14) probably_damaging(0.958) TCGA-BR-4253-01 10 127697933 127697933 T G FANK1 Intron 0.16 TCGA-BR-4253-01 10 3197782 3197782 C T PITRM1 Splice_Site p.X541_splice 0.17 TCGA-BR-4253-01 10 43292386 43292386 A C BMS1 Missense_Mutation p.K565T 0.17 tolerated(0.08) benign(0.002) TCGA-BR-4253-01 10 43292525 43292525 G C BMS1 Missense_Mutation p.E611D 0.18 tolerated(0.28) benign(0.002) TCGA-BR-4253-01 10 58118565 58118565 C T ZWINT Splice_Site p.X208_splice 0.15 TCGA-BR-4253-01 10 89720799 89720802 TACT - PTEN Frame_Shift_Del p.T319* 0.50 TCGA-BR-4253-01 11 113076865 113076865 G A NCAM1 Silent p.G256G 0.08 TCGA-BR-4253-01 11 56468143 56468143 G A OR9G1 Missense_Mutation p.A94T 0.13 tolerated(0.25) benign(0.053) TCGA-BR-4253-01 11 5862742 5862742 C A OR52E6 Missense_Mutation p.C129F 0.07 deleterious(0) possibly_damaging(0.545) TCGA-BR-4253-01 11 60971081 60971081 C T PGA3 Silent p.C15C 0.22 TCGA-BR-4253-01 11 63672270 63672270 G A MARK2 Silent p.Q563Q 0.25 TCGA-BR-4253-01 11 65269711 65269711 A G MALAT1 RNA 0.13 TCGA-BR-4253-01 11 88780590 88780590 A G GRM5 Missense_Mutation p.S151P 0.20 deleterious(0) probably_damaging(0.999) TCGA-BR-4253-01 12 56031172 56031172 C T OR10P1 Missense_Mutation p.S166F 0.26 deleterious(0.01) possibly_damaging(0.637) TCGA-BR-4253-01 13 111111150 111111150 G A COL4A2 Missense_Mutation p.D489N 0.14 possibly_damaging(0.881) TCGA-BR-4253-01 13 113159028 113159028 T - TUBGCP3 Frame_Shift_Del p.E696Gfs*60 0.16 TCGA-BR-4253-01 13 78475267 78475267 A - EDNRB Frame_Shift_Del p.Y383Ifs*3 0.27 TCGA-BR-4253-01 14 105405849 105405849 C T AHNAK2 Missense_Mutation p.M5313I 0.16 benign(0.048) TCGA-BR-4253-01 14 106757729 106757729 T C IGHV2-26 Missense_Mutation p.D93G 0.12 deleterious(0.01) benign(0.017) TCGA-BR-4253-01 14 77705811 77705811 A T TMEM63C Missense_Mutation p.N261I 0.22 deleterious(0.03) benign(0.058) TCGA-BR-4253-01 15 20170078 20170078 T G IGHV1OR15-9 Missense_Mutation p.E65A 0.22 deleterious(0) possibly_damaging(0.628) TCGA-BR-4253-01 15 68661546 68661546 C T ITGA11 Missense_Mutation p.G81R 0.29 tolerated(0.5) benign(0.379) TCGA-BR-4253-01 16 30976237 30976237 C A SETD1A Missense_Mutation p.P392T 0.20 benign(0.065) TCGA-BR-4253-01 17 66871845 66871845 G A ABCA8 Missense_Mutation p.T1427M 0.18 deleterious(0.04) benign(0.302) TCGA-BR-4253-01 17 7984146 7984146 G A AC129492.6 3'UTR 0.31 TCGA-BR-4253-01 18 40850508 40850508 A G SYT4 Missense_Mutation p.V359A 0.18 tolerated(0.11) possibly_damaging(0.811) TCGA-BR-4253-01 19 12866250 12866250 G A BEST2 Missense_Mutation p.V232I 0.28 tolerated(1) benign(0.023) TCGA-BR-4253-01 19 15839222 15839222 C T OR10H2 Silent p.Y123Y 0.20 TCGA-BR-4253-01 19 18538736 18538736 C T SSBP4 Missense_Mutation p.P75S 0.24 deleterious(0) probably_damaging(0.999) TCGA-BR-4253-01 19 22846716 22846716 G A ZNF492 Missense_Mutation p.R82K 0.35 tolerated(0.45) benign(0.001) TCGA-BR-4253-01 19 22846743 22846743 G A ZNF492 Missense_Mutation p.C91Y 0.36 tolerated(0.08) possibly_damaging(0.831) TCGA-BR-4253-01 19 33647307 33647307 C T WDR88 Missense_Mutation p.H286Y 0.19 deleterious(0.01) probably_damaging(0.963) TCGA-BR-4253-01 19 47910682 47910682 G A MEIS3 Missense_Mutation p.P334S 0.23 deleterious(0.01) possibly_damaging(0.794) TCGA-BR-4253-01 19 56539808 56539808 C T NLRP5 Missense_Mutation p.R737W 0.16 deleterious(0) probably_damaging(0.993) TCGA-BR-4253-01 19 9007843 9007843 A C MUC16 Silent p.G13127G 0.10 TCGA-BR-4253-01 1 113241043 113241043 G A MOV10 Silent p.K817K 0.14 TCGA-BR-4253-01 1 117087145 117087145 A T CD58 Nonsense_Mutation p.L51* 0.21 TCGA-BR-4253-01 1 160589609 160589609 T C SLAMF1 Missense_Mutation p.E274G 0.20 tolerated(0.05) benign(0.14) TCGA-BR-4253-01 1 16914286 16914286 T C NBPF1 Missense_Mutation p.D167G 0.09 tolerated(0.15) possibly_damaging(0.728) TCGA-BR-4253-01 1 184663564 184663564 T A EDEM3 Missense_Mutation p.D811V 0.31 tolerated(0.25) benign(0.075) TCGA-BR-4253-01 1 185068944 185068944 C T RNF2 Silent p.N253N 0.09 TCGA-BR-4253-01 1 216496837 216496837 T A USH2A Missense_Mutation p.D510V 0.17 possibly_damaging(0.493) TCGA-BR-4253-01 1 222843513 222843513 C T AIDA Silent p.E262E 0.21 TCGA-BR-4253-01 1 223285929 223285929 G A TLR5 Missense_Mutation p.R149C 0.21 tolerated(0.12) possibly_damaging(0.8) TCGA-BR-4253-01 1 248525601 248525601 T G OR2T4 Missense_Mutation p.L240R 0.19 deleterious(0) probably_damaging(0.996) TCGA-BR-4253-01 1 27100312 27100312 C T ARID1A Nonsense_Mutation p.Q1342* 0.38 TCGA-BR-4253-01 1 53543383 53543383 G - PODN Frame_Shift_Del p.A305Pfs*5 0.18 TCGA-BR-4253-01 20 3245153 3245153 A C C20orf194 Missense_Mutation p.L935R 0.22 deleterious(0) probably_damaging(0.96) TCGA-BR-4253-01 20 57478739 57478739 G A GNAS Missense_Mutation p.A752T 0.19 deleterious(0) probably_damaging(1) TCGA-BR-4253-01 20 61834910 61834910 C T YTHDF1 Missense_Mutation p.A128T 0.15 tolerated(0.24) benign(0.009) TCGA-BR-4253-01 21 30968776 30968776 G T GRIK1-AS2 Silent p.G35G 0.17 TCGA-BR-4253-01 22 22786707 22786707 A C IGLV1-36 Missense_Mutation p.K86T 0.11 deleterious_low_confidence(0) benign(0.166) TCGA-BR-4253-01 2 11735458 11735458 C T GREB1 Missense_Mutation p.T593M 0.16 deleterious(0) probably_damaging(0.96) TCGA-BR-4253-01 2 133542728 133542728 T G NCKAP5 Silent p.P552P 0.23 TCGA-BR-4253-01 2 145156205 145156205 G A ZEB2 Missense_Mutation p.S850F 0.21 tolerated(0.68) benign(0.055) TCGA-BR-4253-01 2 192227095 192227095 C T MYO1B Missense_Mutation p.R255W 0.32 deleterious(0.01) probably_damaging(0.985) TCGA-BR-4253-01 2 202073970 202073970 C T CASP10 Missense_Mutation p.S367L 0.15 deleterious(0.01) possibly_damaging(0.491) TCGA-BR-4253-01 2 233396285 233396285 G A CHRND Missense_Mutation p.M322I 0.20 tolerated(0.25) benign(0.002) TCGA-BR-4253-01 3 121345655 121345655 T G FBXO40 Silent p.T676T 0.16 TCGA-BR-4253-01 3 121725886 121725886 G A ILDR1 Missense_Mutation p.R61C 0.18 deleterious(0) probably_damaging(0.993) TCGA-BR-4253-01 3 122354929 122354929 C T PARP15 Silent p.L673L 0.17 TCGA-BR-4253-01 3 151056389 151056389 A C P2RY12 Missense_Mutation p.L82R 0.15 deleterious(0) probably_damaging(0.995) TCGA-BR-4253-01 3 178921553 178921553 T A PIK3CA Missense_Mutation p.N345K 0.16 deleterious(0.01) probably_damaging(1) TCGA-BR-4253-01 3 27326407 27326407 A G NEK10 Missense_Mutation p.L612P 0.18 deleterious(0) probably_damaging(0.987) TCGA-BR-4253-01 3 58849420 58849420 G C C3orf67 Nonsense_Mutation p.S361* 0.14 TCGA-BR-4253-01 4 126372620 126372620 T G FAT4 Silent p.V3483V 0.15 TCGA-BR-4253-01 4 2896375 2896375 G A ADD1 Missense_Mutation p.G220S 0.17 tolerated(0.07) probably_damaging(0.937) TCGA-BR-4253-01 4 46967137 46967137 A C GABRA4 Silent p.A328A 0.20 TCGA-BR-4253-01 4 86863361 86863361 C A ARHGAP24 Silent p.G178G 0.14 TCGA-BR-4253-01 5 121405747 121405747 C T LOX Splice_Site p.X416_splice 0.17 TCGA-BR-4253-01 5 121785553 121785553 C T SNCAIP Missense_Mutation p.R536C 0.11 deleterious(0) probably_damaging(0.932) TCGA-BR-4253-01 5 127727788 127727788 C T FBN2 Missense_Mutation p.R509H 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-BR-4253-01 5 140801462 140801462 G A PCDHGA11 Missense_Mutation p.R223Q 0.21 deleterious_low_confidence(0.04) benign(0.234) TCGA-BR-4253-01 5 146080690 146080690 G A PPP2R2B Missense_Mutation p.T32M 0.18 deleterious(0) probably_damaging(0.982) TCGA-BR-4253-01 5 156770548 156770548 G A FNDC9 5'UTR 0.16 TCGA-BR-4253-01 5 180276248 180276248 C T ZFP62 Silent p.R749R 0.25 TCGA-BR-4253-01 5 32048689 32048689 A C PDZD2 Missense_Mutation p.M522L 0.14 tolerated(0.08) probably_damaging(0.986) TCGA-BR-4253-01 5 35793298 35793298 A C SPEF2 Missense_Mutation p.E1531A 0.10 deleterious(0.01) benign(0.007) TCGA-BR-4253-01 5 653238 653238 C T CEP72 Silent p.S638S 0.20 TCGA-BR-4253-01 5 95278735 95278735 G A ELL2 Missense_Mutation p.P56S 0.18 deleterious(0.02) benign(0.212) TCGA-BR-4253-01 6 108204347 108204347 C T SEC63 Missense_Mutation p.A560T 0.19 tolerated(0.65) benign(0.002) TCGA-BR-4253-01 6 39507802 39507802 G A KIF6 Missense_Mutation p.S541F 0.20 tolerated(0.06) benign(0.258) TCGA-BR-4253-01 6 9908827 9908827 G A OFCC1 Silent p.Y89Y 0.17 TCGA-BR-4253-01 7 100679310 100679310 C T MUC17 Missense_Mutation p.P1538L 0.22 unknown(0) TCGA-BR-4253-01 7 103338452 103338452 C A RELN Nonsense_Mutation p.E331* 0.25 TCGA-BR-4253-01 7 150746116 150746116 C T ASIC3 Silent p.A48A 0.25 TCGA-BR-4253-01 7 151261254 151261254 A C PRKAG2 Silent p.L498L 0.18 TCGA-BR-4253-01 7 63721262 63721262 G C ZNF679 Missense_Mutation p.E73Q 0.15 deleterious(0.01) possibly_damaging(0.449) TCGA-BR-4253-01 7 77764359 77764359 G T MAGI2 Missense_Mutation p.L1004I 0.16 deleterious(0) probably_damaging(0.999) TCGA-BR-4253-01 7 814760 814760 G A HEATR2 Missense_Mutation p.G734S 0.19 tolerated(1) benign(0.002) TCGA-BR-4253-01 7 92164116 92164116 G A RBM48 Silent p.E283E 0.14 TCGA-BR-4253-01 8 105456579 105456579 C T DPYS Silent p.T230T 0.23 TCGA-BR-4253-01 8 12878836 12878836 C A KIAA1456 Silent p.G216G 0.35 TCGA-BR-4253-01 8 27320907 27320907 A G CHRNA2 Silent p.N351N 0.33 TCGA-BR-4253-01 8 36780063 36780063 C G KCNU1 Silent p.L884L 0.09 TCGA-BR-4253-01 8 61655087 61655087 C T CHD7 Missense_Mutation p.P366S 0.06 possibly_damaging(0.641) TCGA-BR-4253-01 8 72123487 72123487 T G EYA1 Missense_Mutation p.K534N 0.19 deleterious(0) probably_damaging(1) TCGA-BR-4253-01 X 101911301 101911301 G C GPRASP1 Missense_Mutation p.E820D 0.14 deleterious(0.05) possibly_damaging(0.664) TCGA-BR-4253-01 X 117054233 117054233 G C KLHL13 Missense_Mutation p.S117C 0.05 deleterious(0) probably_damaging(0.914) TCGA-BR-4253-01 X 118221164 118221164 C T KIAA1210 Silent p.Q1343Q 0.15 TCGA-BR-4253-01 X 136112305 136112305 C T GPR101 3'Flank 0.14 TCGA-BR-4253-01 X 39933822 39933822 C T BCOR Silent p.S259S 0.17 TCGA-BR-4253-01 X 49029563 49029563 A G PLP2 Missense_Mutation p.I62V 0.09 tolerated(1) benign(0.004) TCGA-BR-4253-01 X 6451795 6451795 C T VCX3A Silent p.P184P 0.30 TCGA-BR-4253-01 X 86868966 86868966 G A KLHL4 Missense_Mutation p.R170H 0.44 tolerated(0.2) benign(0.002) TCGA-BR-4253-01 X 96167527 96167527 C T DIAPH2 Silent p.C236C 0.09 TCGA-BR-4255-01 10 100015439 100015439 G A LOXL4 Missense_Mutation p.R496C 0.09 deleterious(0) possibly_damaging(0.849) TCGA-BR-4255-01 10 100481463 100481463 C A HPSE2 Missense_Mutation p.G303C 0.08 deleterious(0) probably_damaging(1) TCGA-BR-4255-01 10 104679833 104679833 C T CNNM2 Silent p.D532D 0.13 TCGA-BR-4255-01 10 105750529 105750529 T C SLK Silent p.L83L 0.23 TCGA-BR-4255-01 10 124089067 124089067 T C BTBD16 Silent p.R328R 0.09 TCGA-BR-4255-01 10 133761176 133761176 G A PPP2R2D Missense_Mutation p.M290I 0.11 deleterious(0) possibly_damaging(0.62) TCGA-BR-4255-01 10 54527853 54527853 G A MBL2 3'UTR 0.12 TCGA-BR-4255-01 10 87407072 87407072 T C GRID1 Missense_Mutation p.K694E 0.10 deleterious(0.01) probably_damaging(0.997) TCGA-BR-4255-01 11 216681 216681 T C SIRT3 3'UTR 0.09 TCGA-BR-4255-01 11 35243229 35243229 G A CD44 Silent p.L658L 0.07 TCGA-BR-4255-01 11 70333139 70333139 G A SHANK2 Missense_Mutation p.R1088C 0.15 deleterious(0) benign(0.189) TCGA-BR-4255-01 11 73789208 73789208 C T C2CD3 Missense_Mutation p.D1519N 0.06 deleterious(0.03) probably_damaging(0.996) TCGA-BR-4255-01 12 2706664 2706664 T C CACNA1C Splice_Site p.X971_splice 0.14 TCGA-BR-4255-01 12 45409957 45409957 C T DBX2 3'UTR 0.23 TCGA-BR-4255-01 12 56232293 56232293 T G MMP19 Intron 0.11 TCGA-BR-4255-01 12 6122735 6122735 G A VWF Silent p.G1844G 0.17 TCGA-BR-4255-01 14 100135215 100135215 G A HHIPL1 Intron 0.14 TCGA-BR-4255-01 14 31191756 31191756 C T SCFD1 Silent p.D609D 0.22 TCGA-BR-4255-01 15 34647250 34647250 T G NUTM1 Missense_Mutation p.L436R 0.29 deleterious(0) probably_damaging(0.992) TCGA-BR-4255-01 15 84566718 84566718 G T ADAMTSL3 Nonsense_Mutation p.E526* 0.30 TCGA-BR-4255-01 16 74425446 74425446 C T NPIPB15 Missense_Mutation p.P267L 0.06 tolerated_low_confidence(0.06) benign(0.034) TCGA-BR-4255-01 17 4675218 4675218 A T TM4SF5 Translation_Start_Site p.M1? 0.10 deleterious(0) probably_damaging(0.996) TCGA-BR-4255-01 17 64881015 64881015 G A CACNG5 Intron 0.33 TCGA-BR-4255-01 17 72436967 72436967 G T GPRC5C Splice_Site p.X396_splice 0.10 TCGA-BR-4255-01 17 7578208 7578208 T C TP53 Missense_Mutation p.H214R 0.25 deleterious(0.02) probably_damaging(0.922) TCGA-BR-4255-01 18 18534767 18534770 TCTT - ROCK1 Frame_Shift_Del p.K1276Rfs*3 0.11 TCGA-BR-4255-01 19 51645712 51645712 C T SIGLEC7 Missense_Mutation p.T29M 0.29 tolerated(0.11) benign(0.023) TCGA-BR-4255-01 19 53208072 53208072 A G ZNF611 3'UTR 0.07 TCGA-BR-4255-01 1 113058764 113058764 A G WNT2B Missense_Mutation p.S136G 0.16 deleterious(0) probably_damaging(0.983) TCGA-BR-4255-01 1 117491914 117491914 C T PTGFRN Silent p.P311P 0.09 TCGA-BR-4255-01 1 145584516 145584516 C T PIAS3 Silent p.L495L 0.07 TCGA-BR-4255-01 1 149921651 149921651 T C OTUD7B Missense_Mutation p.Y335C 0.16 deleterious(0) probably_damaging(1) TCGA-BR-4255-01 1 170688997 170688997 A - PRRX1 Frame_Shift_Del p.E125Kfs*7 0.26 TCGA-BR-4255-01 1 93594899 93594899 C T MTF2 Missense_Mutation p.P352S 0.13 deleterious(0) probably_damaging(1) TCGA-BR-4255-01 20 25252030 25252030 G A PYGB Missense_Mutation p.D146N 0.23 deleterious(0.01) probably_damaging(0.996) TCGA-BR-4255-01 20 42169439 42169439 G A L3MBTL1 Missense_Mutation p.R771H 0.19 deleterious(0.02) possibly_damaging(0.795) TCGA-BR-4255-01 20 53171572 53171574 ATC - DOK5 In_Frame_Del p.H57del 0.13 TCGA-BR-4255-01 21 46596225 46596225 C T ADARB1 Silent p.S203S 0.15 TCGA-BR-4255-01 22 50893258 50893258 C T SBF1 Silent p.A1599A 0.28 TCGA-BR-4255-01 2 131976213 131976213 G A POTEE Missense_Mutation p.V80M 0.22 tolerated_low_confidence(0.09) possibly_damaging(0.623) TCGA-BR-4255-01 2 141707814 141707814 A G LRP1B Silent p.C1042C 0.23 TCGA-BR-4255-01 2 167133781 167133781 T A SCN9A Silent p.S851S 0.12 TCGA-BR-4255-01 2 182360534 182360534 C T ITGA4 Silent p.D470D 0.15 TCGA-BR-4255-01 2 190660534 190660534 G A PMS1 Missense_Mutation p.G58R 0.17 deleterious(0) probably_damaging(0.978) TCGA-BR-4255-01 2 48848413 48848413 A T STON1-GTF2A1L Silent p.T781T 0.11 TCGA-BR-4255-01 2 60688090 60688090 C G BCL11A Missense_Mutation p.E653Q 0.08 deleterious(0.01) benign(0.319) TCGA-BR-4255-01 2 99725896 99725896 G A TSGA10 Nonsense_Mutation p.R3* 0.10 TCGA-BR-4255-01 3 101572358 101572358 C - NFKBIZ Frame_Shift_Del p.P330Qfs*11 0.22 TCGA-BR-4255-01 3 111264125 111264125 G A CD96 Silent p.G98G 0.08 TCGA-BR-4255-01 3 112356885 112356885 C T CCDC80 Missense_Mutation p.R623Q 0.21 deleterious(0) probably_damaging(0.998) TCGA-BR-4255-01 3 142416830 142416830 A G PLS1 Missense_Mutation p.Y431C 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-BR-4255-01 3 196675340 196675340 G A PIGZ Missense_Mutation p.A143V 0.18 tolerated(0.09) benign(0.038) TCGA-BR-4255-01 4 186329110 186329110 C T UFSP2 Silent p.T367T 0.09 TCGA-BR-4255-01 4 70810618 70810618 C G CSN1S1 Nonsense_Mutation p.Y151* 0.05 TCGA-BR-4255-01 4 90034294 90034294 A G TIGD2 Missense_Mutation p.N57D 0.21 deleterious(0.02) benign(0.103) TCGA-BR-4255-01 5 137292190 137292190 T C FAM13B Intron 0.16 TCGA-BR-4255-01 5 137844018 137844018 T C ETF1 Silent p.E430E 0.08 TCGA-BR-4255-01 5 171523475 171523475 G A STK10 Silent p.D320D 0.12 TCGA-BR-4255-01 5 90074406 90074406 C T GPR98 Nonsense_Mutation p.R4277* 0.29 TCGA-BR-4255-01 6 26199399 26199399 G A HIST1H2AD Nonsense_Mutation p.Q25* 0.15 TCGA-BR-4255-01 6 42236873 42236873 G A TRERF1 Silent p.N152N 0.05 TCGA-BR-4255-01 6 4892004 4892004 C T CDYL Missense_Mutation p.R28W 0.34 deleterious(0) probably_damaging(0.988) TCGA-BR-4255-01 6 83075655 83075655 C T TPBG Missense_Mutation p.P326L 0.07 deleterious(0) probably_damaging(1) TCGA-BR-4255-01 7 127978360 127978360 T C RBM28 Missense_Mutation p.K162R 0.30 tolerated(0.13) benign(0.097) TCGA-BR-4255-01 7 155534608 155534608 G A RBM33 Silent p.P715P 0.21 TCGA-BR-4255-01 7 24325011 24325011 C T NPY Missense_Mutation p.A51V 0.19 deleterious(0) probably_damaging(0.999) TCGA-BR-4255-01 7 99015162 99015162 G C BUD31 Missense_Mutation p.D110H 0.09 deleterious(0) probably_damaging(0.973) TCGA-BR-4255-01 8 104452417 104452417 C T DCAF13 Missense_Mutation p.S487F 0.06 tolerated(0.7) benign(0.196) TCGA-BR-4255-01 8 11643642 11643642 C T NEIL2 Nonsense_Mutation p.Q287* 0.08 TCGA-BR-4255-01 8 37702081 37702081 G A BRF2 Missense_Mutation p.P396L 0.09 deleterious(0) possibly_damaging(0.889) TCGA-BR-4255-01 8 81553643 81553643 G A ZNF704 Silent p.T399T 0.14 TCGA-BR-4255-01 9 137805455 137805455 G A FCN1 Silent p.D104D 0.19 TCGA-BR-4255-01 9 21077680 21077680 C T IFNB1 Silent p.E63E 0.12 TCGA-BR-4255-01 9 27158095 27158095 C T TEK Nonsense_Mutation p.R107* 0.08 TCGA-BR-4255-01 9 34089583 34089583 G A DCAF12 Missense_Mutation p.R344W 0.15 deleterious(0) probably_damaging(0.956) TCGA-BR-4255-01 9 66468632 66468632 T C RP11-262H14.1 RNA 0.22 TCGA-BR-4255-01 X 140996328 140996328 A C MAGEC1 Missense_Mutation p.K1046N 0.12 deleterious(0.01) unknown(0) TCGA-BR-4255-01 X 153698807 153698807 A C PLXNA3 Missense_Mutation p.D1670A 0.06 deleterious(0) probably_damaging(0.999) TCGA-BR-4256-01 10 100017916 100017916 C T LOXL4 Silent p.P309P 0.26 TCGA-BR-4256-01 10 100147059 100147059 C T PYROXD2 Missense_Mutation p.D485N 0.20 tolerated(0.28) benign(0.003) TCGA-BR-4256-01 10 102734779 102734779 C T SEMA4G Intron 0.20 TCGA-BR-4256-01 10 103558747 103558747 G A MGEA5 Missense_Mutation p.T554I 0.18 deleterious(0) possibly_damaging(0.83) TCGA-BR-4256-01 10 103921390 103921390 A G NOLC1 Missense_Mutation p.T607A 0.20 deleterious_low_confidence(0.01) benign(0.184) TCGA-BR-4256-01 10 104120057 104120057 C T GBF1 Missense_Mutation p.H432Y 0.13 deleterious(0.01) benign(0.047) TCGA-BR-4256-01 10 104156720 104156720 A G NFKB2 Silent p.P101P 0.10 TCGA-BR-4256-01 10 105659861 105659861 C T OBFC1 Missense_Mutation p.R139H 0.10 tolerated(0.12) benign(0.024) TCGA-BR-4256-01 10 114194118 114194118 C A ZDHHC6 Silent p.G280G 0.08 TCGA-BR-4256-01 10 114200298 114200298 A - ZDHHC6 Frame_Shift_Del p.F225Lfs*4 0.10 TCGA-BR-4256-01 10 115338385 115338385 G T HABP2 Splice_Site p.X190_splice 0.09 TCGA-BR-4256-01 10 115402723 115402723 G A NRAP Silent p.N395N 0.17 TCGA-BR-4256-01 10 12006024 12006024 C T UPF2 Missense_Mutation p.R723K 0.16 deleterious(0.02) possibly_damaging(0.842) TCGA-BR-4256-01 10 120353576 120353576 G A PRLHR 3'UTR 0.18 TCGA-BR-4256-01 10 12071324 12071324 A C UPF2 Missense_Mutation p.L189V 0.08 tolerated(0.06) possibly_damaging(0.679) TCGA-BR-4256-01 10 123276912 123276912 C A FGFR2 Intron 0.09 TCGA-BR-4256-01 10 124345846 124345846 G A DMBT1 Missense_Mutation p.G577D 0.18 deleterious(0.03) unknown(0) TCGA-BR-4256-01 10 124348500 124348500 T A DMBT1 Silent p.G608G 0.14 TCGA-BR-4256-01 10 125447476 125447476 G A GPR26 Missense_Mutation p.G272S 0.11 tolerated(0.73) benign(0.003) TCGA-BR-4256-01 10 128193584 128193584 T G C10orf90 Missense_Mutation p.K62T 0.12 tolerated(0.05) possibly_damaging(0.856) TCGA-BR-4256-01 10 134006199 134006199 A G DPYSL4 Missense_Mutation p.K56E 0.09 tolerated(0.18) benign(0.037) TCGA-BR-4256-01 10 135013091 135013091 C T KNDC1 Missense_Mutation p.A963V 0.19 tolerated(0.18) benign(0.069) TCGA-BR-4256-01 10 13708227 13708227 T - FRMD4A Frame_Shift_Del p.K491Nfs*2 0.15 TCGA-BR-4256-01 10 16942758 16942758 A G CUBN Missense_Mutation p.I2759T 0.08 deleterious(0.04) benign(0.084) TCGA-BR-4256-01 10 18276457 18276457 G A SLC39A12 Missense_Mutation p.M382I 0.17 deleterious(0) possibly_damaging(0.619) TCGA-BR-4256-01 10 18834895 18834895 A - NSUN6 Frame_Shift_Del p.F459Lfs*6 0.11 TCGA-BR-4256-01 10 27403477 27403477 G A YME1L1 Silent p.I717I 0.09 TCGA-BR-4256-01 10 28420597 28420597 A G MPP7 Silent p.T113T 0.14 TCGA-BR-4256-01 10 30317027 30317027 G A KIAA1462 Missense_Mutation p.H684Y 0.15 tolerated(0.09) benign(0.188) TCGA-BR-4256-01 10 31791321 31791321 A G ZEB1 Missense_Mutation p.H123R 0.09 tolerated(0.09) benign(0.003) TCGA-BR-4256-01 10 32740668 32740668 C A CCDC7 Missense_Mutation p.P33H 0.15 tolerated(0.13) probably_damaging(0.977) TCGA-BR-4256-01 10 33209310 33209310 G T ITGB1 Missense_Mutation p.L378I 0.09 deleterious(0) probably_damaging(0.982) TCGA-BR-4256-01 10 33469287 33469287 G A NRP1 Missense_Mutation p.T830M 0.14 tolerated(0.22) benign(0.018) TCGA-BR-4256-01 10 43297650 43297650 G T BMS1 Missense_Mutation p.K771N 0.12 tolerated(0.13) benign(0.196) TCGA-BR-4256-01 10 43656003 43656003 G T CSGALNACT2 Nonsense_Mutation p.G314* 0.15 TCGA-BR-4256-01 10 45877991 45877991 G A ALOX5 Missense_Mutation p.E71K 0.10 deleterious(0.02) possibly_damaging(0.678) TCGA-BR-4256-01 10 48390672 48390672 G A RBP3 Missense_Mutation p.T69M 0.16 tolerated(0.24) possibly_damaging(0.867) TCGA-BR-4256-01 10 54048595 54048595 A - PRKG1 Frame_Shift_Del p.K608Nfs*11 0.11 TCGA-BR-4256-01 10 5790076 5790076 A - FAM208B Frame_Shift_Del p.K1565Nfs*36 0.13 TCGA-BR-4256-01 10 61043190 61043190 C T FAM13C Silent p.V175V 0.15 TCGA-BR-4256-01 10 61829517 61829517 C A ANK3 Missense_Mutation p.A3708S 0.10 benign(0.003) TCGA-BR-4256-01 10 70097668 70097668 A C HNRNPH3 Missense_Mutation p.S56R 0.13 tolerated(0.05) unknown(0) TCGA-BR-4256-01 10 70332273 70332273 A - TET1 Frame_Shift_Del p.T62Qfs*13 0.15 TCGA-BR-4256-01 10 72539499 72539499 C T TBATA Splice_Site p.X93_splice 0.18 TCGA-BR-4256-01 10 73121832 73121832 C T SLC29A3 Missense_Mutation p.R299C 0.12 tolerated(0.19) benign(0.082) TCGA-BR-4256-01 10 75435824 75435824 G A AGAP5 Silent p.T198T 0.12 TCGA-BR-4256-01 10 75533570 75533570 A G FUT11 Missense_Mutation p.D444G 0.12 deleterious(0.03) possibly_damaging(0.87) TCGA-BR-4256-01 10 7618607 7618607 G A ITIH5 Missense_Mutation p.P596L 0.14 tolerated(0.26) benign(0.103) TCGA-BR-4256-01 10 7621950 7621950 G A ITIH5 Missense_Mutation p.R396W 0.18 deleterious(0) probably_damaging(0.975) TCGA-BR-4256-01 10 78771791 78771791 A - KCNMA1 Frame_Shift_Del p.Y676Tfs*15 0.16 TCGA-BR-4256-01 10 81113488 81113488 G A PPIF Missense_Mutation p.G172S 0.18 deleterious_low_confidence(0) probably_damaging(1) TCGA-BR-4256-01 10 81113585 81113585 G A PPIF Missense_Mutation p.G204D 0.21 deleterious_low_confidence(0) probably_damaging(1) TCGA-BR-4256-01 10 81317088 81317088 G A SFTPA2 Silent p.Y208Y 0.14 TCGA-BR-4256-01 10 89693003 89693003 A - PTEN Frame_Shift_Del p.K164Rfs*3 0.11 TCGA-BR-4256-01 10 89717770 89717770 A - PTEN Frame_Shift_Del p.K267Rfs*9 0.17 TCGA-BR-4256-01 10 91163033 91163033 A - IFIT1 Frame_Shift_Del p.K336Sfs*9 0.11 TCGA-BR-4256-01 10 91344113 91344113 T - PANK1 3'UTR 0.13 TCGA-BR-4256-01 10 91483733 91483733 T C KIF20B Silent p.L579L 0.25 TCGA-BR-4256-01 10 94712135 94712135 C T EXOC6 Missense_Mutation p.R508W 0.15 deleterious(0) possibly_damaging(0.892) TCGA-BR-4256-01 10 95083098 95083098 C A MYOF Missense_Mutation p.W1763C 0.13 deleterious(0) probably_damaging(0.999) TCGA-BR-4256-01 10 97624518 97624518 T C ENTPD1 Missense_Mutation p.L421P 0.15 deleterious(0) probably_damaging(1) TCGA-BR-4256-01 10 97779370 97779370 T C CC2D2B Intron 0.15 TCGA-BR-4256-01 10 99139083 99139083 A C RRP12 Missense_Mutation p.F589V 0.11 deleterious(0) possibly_damaging(0.897) TCGA-BR-4256-01 10 99343491 99343491 C T ANKRD2 3'UTR 0.36 TCGA-BR-4256-01 10 99439420 99439420 C T AVPI1 Silent p.R81R 0.22 TCGA-BR-4256-01 11 106810870 106810870 A G GUCY1A2 Silent p.G174G 0.14 TCGA-BR-4256-01 11 110030105 110030105 G A ZC3H12C Silent p.S346S 0.10 TCGA-BR-4256-01 11 113934373 113934373 G A ZBTB16 Silent p.Q117Q 0.10 TCGA-BR-4256-01 11 114121133 114121133 C T ZBTB16 Silent p.G626G 0.09 TCGA-BR-4256-01 11 115111047 115111047 A G CADM1 Missense_Mutation p.V73A 0.13 tolerated(0.51) possibly_damaging(0.574) TCGA-BR-4256-01 11 116707832 116707832 G - APOA1 Frame_Shift_Del p.Q29Rfs*7 0.11 TCGA-BR-4256-01 11 117222588 117222588 C T CEP164 Missense_Mutation p.R93W 0.11 deleterious(0) probably_damaging(1) TCGA-BR-4256-01 11 117253641 117253641 G A CEP164 Silent p.P569P 0.27 TCGA-BR-4256-01 11 117864040 117864040 C - IL10RA Frame_Shift_Del p.A153Qfs*33 0.23 TCGA-BR-4256-01 11 119547871 119547871 G A PVRL1 Silent p.D264D 0.15 TCGA-BR-4256-01 11 121475905 121475905 A - SORL1 Frame_Shift_Del p.M1581Cfs*34 0.19 TCGA-BR-4256-01 11 122817463 122817463 A - C11orf63 Frame_Shift_Del p.K632Rfs*16 0.16 TCGA-BR-4256-01 11 123464792 123464792 G A GRAMD1B Silent p.V86V 0.15 TCGA-BR-4256-01 11 123676673 123676673 G A OR6M1 Missense_Mutation p.H129Y 0.12 deleterious(0.01) benign(0.206) TCGA-BR-4256-01 11 125618701 125618701 A - PATE1 3'UTR 0.16 TCGA-BR-4256-01 11 126278260 126278260 C T ST3GAL4 Missense_Mutation p.R166C 0.12 deleterious(0) probably_damaging(1) TCGA-BR-4256-01 11 128774355 128774355 G T C11orf45 Missense_Mutation p.P36H 0.11 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-BR-4256-01 11 128781942 128781942 C T KCNJ5 Silent p.N258N 0.19 TCGA-BR-4256-01 11 1642517 1642517 G A KRTAP5-4 3'UTR 0.23 TCGA-BR-4256-01 11 17408965 17408965 C T KCNJ11 Missense_Mutation p.S225N 0.13 deleterious(0) possibly_damaging(0.6) TCGA-BR-4256-01 11 20113852 20113852 C - NAV2 Frame_Shift_Del p.P1978Rfs*12 0.10 TCGA-BR-4256-01 11 30033740 30033740 G A KCNA4 Silent p.G162G 0.15 TCGA-BR-4256-01 11 32624508 32624508 G A CCDC73 Missense_Mutation p.T1030M 0.15 tolerated(0.18) possibly_damaging(0.897) TCGA-BR-4256-01 11 33079684 33079684 A G TCP11L1 Missense_Mutation p.R213G 0.20 deleterious(0) possibly_damaging(0.794) TCGA-BR-4256-01 11 33881074 33881074 C T LMO2 Missense_Mutation p.R171H 0.12 deleterious(0.02) possibly_damaging(0.535) TCGA-BR-4256-01 11 36595310 36595310 G A RAG1 Silent p.P152P 0.16 TCGA-BR-4256-01 11 43923097 43923097 G A ALKBH3 Missense_Mutation p.R164H 0.20 tolerated(0.21) benign(0.011) TCGA-BR-4256-01 11 44069844 44069844 C T ACCSL Silent p.A86A 0.14 TCGA-BR-4256-01 11 46765605 46765605 T - CKAP5 Frame_Shift_Del p.R2023Dfs*5 0.13 TCGA-BR-4256-01 11 4703475 4703475 A - OR51E2 Frame_Shift_Del p.F156Sfs*6 0.27 TCGA-BR-4256-01 11 47238526 47238526 G A DDB2 Missense_Mutation p.A128T 0.21 tolerated(0.06) possibly_damaging(0.691) TCGA-BR-4256-01 11 47363661 47363661 G A MYBPC3 Silent p.G557G 0.11 TCGA-BR-4256-01 11 47377075 47377075 C A SPI1 Silent p.L173L 0.23 TCGA-BR-4256-01 11 47446697 47446697 G A PSMC3 Missense_Mutation p.P87L 0.09 deleterious(0) probably_damaging(0.985) TCGA-BR-4256-01 11 48328289 48328289 T C OR4S1 Missense_Mutation p.I172T 0.13 deleterious(0) possibly_damaging(0.833) TCGA-BR-4256-01 11 50003875 50003875 A G OR4C12 Missense_Mutation p.S55P 0.14 deleterious_low_confidence(0) possibly_damaging(0.762) TCGA-BR-4256-01 11 51515486 51515486 G T OR4C46 Missense_Mutation p.A69S 0.11 deleterious_low_confidence(0.03) possibly_damaging(0.611) TCGA-BR-4256-01 11 5364322 5364322 C A OR51B5 Nonsense_Mutation p.G145* 0.12 TCGA-BR-4256-01 11 55587765 55587765 G A OR5D18 Silent p.A220A 0.14 TCGA-BR-4256-01 11 58034831 58034831 T C OR10W1 Missense_Mutation p.H167R 0.12 deleterious(0) probably_damaging(1) TCGA-BR-4256-01 11 5842336 5842336 T - OR52N2 Frame_Shift_Del p.F259Sfs*9 0.11 TCGA-BR-4256-01 11 58722275 58722275 C T GLYATL1 Silent p.N104N 0.12 TCGA-BR-4256-01 11 58920216 58920216 T C FAM111A Missense_Mutation p.Y359H 0.17 tolerated(0.22) benign(0.01) TCGA-BR-4256-01 11 59282557 59282557 C T OR4D9 Missense_Mutation p.P58S 0.10 deleterious(0.02) possibly_damaging(0.458) TCGA-BR-4256-01 11 60059718 60059718 C T MS4A4A Missense_Mutation p.T21I 0.17 tolerated(0.21) benign(0.043) TCGA-BR-4256-01 11 60704587 60704587 G A SLC15A3 3'UTR 0.16 TCGA-BR-4256-01 11 61404393 61404393 G A RPLP0P2 RNA 0.14 TCGA-BR-4256-01 11 62297304 62297304 C A AHNAK Nonsense_Mutation p.E1529* 0.15 TCGA-BR-4256-01 11 62338457 62338457 G T EEF1G Missense_Mutation p.L168M 0.14 tolerated(0.05) possibly_damaging(0.839) TCGA-BR-4256-01 11 62407174 62407174 A - GANAB Frame_Shift_Del p.L23* 0.14 TCGA-BR-4256-01 11 62744336 62744336 C T SLC22A6 Missense_Mutation p.R541Q 0.24 tolerated(0.7) benign(0.004) TCGA-BR-4256-01 11 62911095 62911095 G - SLC22A24 Frame_Shift_Del p.L53Sfs*21 0.14 TCGA-BR-4256-01 11 63078611 63078611 T - SLC22A10 3'UTR 0.16 TCGA-BR-4256-01 11 64595231 64595231 A G CDC42BPG Missense_Mutation p.V1331A 0.18 deleterious(0.01) probably_damaging(0.997) TCGA-BR-4256-01 11 64662442 64662442 G T ATG2A 3'UTR 0.19 TCGA-BR-4256-01 11 64757176 64757176 A G BATF2 Missense_Mutation p.C84R 0.20 deleterious(0) probably_damaging(0.996) TCGA-BR-4256-01 11 65319552 65319552 G A LTBP3 Silent p.G474G 0.18 TCGA-BR-4256-01 11 65347891 65347891 A G EHBP1L1 Missense_Mutation p.D192G 0.16 deleterious(0) probably_damaging(0.992) TCGA-BR-4256-01 11 65652091 65652091 G A FIBP Silent p.L293L 0.16 TCGA-BR-4256-01 11 65792929 65792929 C T CATSPER1 Missense_Mutation p.A308T 0.32 tolerated(0.56) benign(0.001) TCGA-BR-4256-01 11 66039698 66039698 A G RAB1B Missense_Mutation p.D53G 0.14 deleterious(0.03) benign(0.158) TCGA-BR-4256-01 11 66109071 66109071 G A BRMS1 Nonsense_Mutation p.R55* 0.09 TCGA-BR-4256-01 11 6635741 6635741 G A TPP1 3'UTR 0.15 TCGA-BR-4256-01 11 66436136 66436136 G A RBM4B Missense_Mutation p.R347W 0.19 deleterious(0) possibly_damaging(0.891) TCGA-BR-4256-01 11 67208646 67208646 T C CORO1B Missense_Mutation p.T236A 0.12 deleterious(0) benign(0.015) TCGA-BR-4256-01 11 67218801 67218801 C T GPR152 Silent p.P465P 0.21 TCGA-BR-4256-01 11 67395817 67395817 T G NUDT8 Missense_Mutation p.S128R 0.14 tolerated(0.14) benign(0.209) TCGA-BR-4256-01 11 71809042 71809042 A G LAMTOR1 Intron 0.21 TCGA-BR-4256-01 11 72013356 72013356 G A CLPB Nonsense_Mutation p.R417* 0.09 TCGA-BR-4256-01 11 82880519 82880520 CT - PCF11 Frame_Shift_Del p.L1049Afs*4 0.11 TCGA-BR-4256-01 11 85374742 85374742 T - CREBZF 3'UTR 0.15 TCGA-BR-4256-01 11 88027550 88027550 C T CTSC Missense_Mutation p.R339H 0.09 tolerated(0.18) benign(0.291) TCGA-BR-4256-01 11 92430571 92430571 G T FAT3 Missense_Mutation p.R1210M 0.12 probably_damaging(0.995) TCGA-BR-4256-01 11 95712275 95712275 C A MAML2 Missense_Mutation p.S1103I 0.11 unknown(0) TCGA-BR-4256-01 12 102302036 102302036 C A DRAM1 Missense_Mutation p.L139I 0.07 tolerated(0.09) possibly_damaging(0.888) TCGA-BR-4256-01 12 104160109 104160109 C G STAB2 Missense_Mutation p.L2551V 0.16 deleterious_low_confidence(0.04) probably_damaging(0.991) TCGA-BR-4256-01 12 106464587 106464587 C T NUAK1 Missense_Mutation p.S266N 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-BR-4256-01 12 106480539 106480539 G A NUAK1 Silent p.I162I 0.20 TCGA-BR-4256-01 12 109604665 109604665 G T ACACB Splice_Site p.X218_splice 0.17 TCGA-BR-4256-01 12 109675059 109675059 C T ACACB Silent p.A1512A 0.17 TCGA-BR-4256-01 12 109680283 109680283 C T ACACB Silent p.H1688H 0.25 TCGA-BR-4256-01 12 110781180 110781180 G A ATP2A2 Missense_Mutation p.R821Q 0.12 deleterious(0) probably_damaging(1) TCGA-BR-4256-01 12 111893896 111893896 C T ATXN2 Silent p.T1227T 0.14 TCGA-BR-4256-01 12 112140085 112140085 C T ACAD10 Nonsense_Mutation p.R103* 0.13 TCGA-BR-4256-01 12 112650367 112650367 T C HECTD4 Missense_Mutation p.Y2372C 0.17 probably_damaging(0.988) TCGA-BR-4256-01 12 113532908 113532908 C T DTX1 Missense_Mutation p.P483L 0.11 deleterious(0) probably_damaging(0.998) TCGA-BR-4256-01 12 115120662 115120662 T C TBX3 Missense_Mutation p.Q115R 0.15 deleterious(0.03) probably_damaging(0.931) TCGA-BR-4256-01 12 117685162 117685162 C A NOS1 Missense_Mutation p.K972N 0.12 tolerated(0.18) benign(0.436) TCGA-BR-4256-01 12 1213982 1213982 G A ERC1 Missense_Mutation p.E385K 0.19 deleterious(0) possibly_damaging(0.755) TCGA-BR-4256-01 12 122017957 122017957 T - KDM2B Intron 0.22 TCGA-BR-4256-01 12 123001921 123001921 C T RSRC2 Missense_Mutation p.R152Q 0.12 deleterious_low_confidence(0.03) unknown(0) TCGA-BR-4256-01 12 124192279 124192279 T - TCTN2 3'UTR 0.11 TCGA-BR-4256-01 12 124258738 124258738 T G DNAH10 Missense_Mutation p.I122S 0.18 benign(0.002) TCGA-BR-4256-01 12 124341746 124341746 G A DNAH10 Silent p.A2076A 0.33 TCGA-BR-4256-01 12 12814577 12814577 C T GPR19 Missense_Mutation p.R269Q 0.14 deleterious(0.01) probably_damaging(0.996) TCGA-BR-4256-01 12 130648883 130648883 C T FZD10 Missense_Mutation p.R466C 0.09 tolerated(0.08) benign(0.018) TCGA-BR-4256-01 12 132394487 132394487 C T ULK1 Missense_Mutation p.P250L 0.20 tolerated(0.17) possibly_damaging(0.501) TCGA-BR-4256-01 12 133295367 133295367 G A PGAM5 Intron 0.18 TCGA-BR-4256-01 12 14577496 14577496 C A ATF7IP Missense_Mutation p.P216H 0.14 deleterious_low_confidence(0) benign(0.004) TCGA-BR-4256-01 12 15650227 15650227 C T PTPRO Missense_Mutation p.P133L 0.12 deleterious_low_confidence(0) probably_damaging(1) TCGA-BR-4256-01 12 18719882 18719882 G T PIK3C2G Splice_Site p.X1260_splice 0.11 TCGA-BR-4256-01 12 20868189 20868189 G A SLCO1C1 Missense_Mutation p.A216T 0.18 deleterious(0.01) possibly_damaging(0.759) TCGA-BR-4256-01 12 21531349 21531349 T A IAPP Missense_Mutation p.L87M 0.13 deleterious(0.02) possibly_damaging(0.831) TCGA-BR-4256-01 12 25302613 25302613 C T CASC1 Silent p.L178L 0.09 TCGA-BR-4256-01 12 26636652 26636652 C A ITPR2 Missense_Mutation p.Q1997H 0.12 deleterious(0) probably_damaging(0.92) TCGA-BR-4256-01 12 27842020 27842020 C T PPFIBP1 Nonsense_Mutation p.R863* 0.09 TCGA-BR-4256-01 12 3921464 3921464 C A PARP11 Missense_Mutation p.R281L 0.14 deleterious(0) probably_damaging(1) TCGA-BR-4256-01 12 49165630 49165630 A G ADCY6 Missense_Mutation p.Y972H 0.17 tolerated(0.31) probably_damaging(0.957) TCGA-BR-4256-01 12 4919544 4919544 C - KCNA6 Frame_Shift_Del p.L114Wfs*75 0.15 TCGA-BR-4256-01 12 49415918 49415918 A C KMT2D Missense_Mutation p.C5477G 0.11 benign(0.126) TCGA-BR-4256-01 12 49948282 49948282 G A KCNH3 Missense_Mutation p.R694H 0.24 tolerated(0.14) benign(0) TCGA-BR-4256-01 12 50025218 50025218 C T PRPF40B Missense_Mutation p.P40L 0.16 tolerated_low_confidence(0.18) unknown(0) TCGA-BR-4256-01 12 51882498 51882498 C T SLC4A8 Missense_Mutation p.R768C 0.15 deleterious(0) probably_damaging(0.999) TCGA-BR-4256-01 12 52883814 52883814 G A KRT6A Silent p.D372D 0.06 TCGA-BR-4256-01 12 53565756 53565756 C T CSAD Missense_Mutation p.A148T 0.10 deleterious(0) possibly_damaging(0.905) TCGA-BR-4256-01 12 54115307 54115307 C A CALCOCO1 Missense_Mutation p.E234D 0.12 deleterious(0.01) probably_damaging(0.973) TCGA-BR-4256-01 12 54378978 54378978 G - HOXC10 5'UTR 0.11 TCGA-BR-4256-01 12 54422366 54422366 C T HOXC6 Missense_Mutation p.L21F 0.13 deleterious(0.05) probably_damaging(0.995) TCGA-BR-4256-01 12 54913073 54913073 G A NCKAP1L Missense_Mutation p.V528I 0.15 tolerated(0.14) benign(0.008) TCGA-BR-4256-01 12 54920460 54920460 G A NCKAP1L Missense_Mutation p.A769T 0.19 tolerated(0.12) benign(0.036) TCGA-BR-4256-01 12 55863562 55863562 A G OR6C70 Missense_Mutation p.Y121H 0.13 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-BR-4256-01 12 56490366 56490366 T G ERBB3 Missense_Mutation p.L712R 0.14 deleterious(0) probably_damaging(0.942) TCGA-BR-4256-01 12 56495459 56495459 C A ERBB3 Missense_Mutation p.L1217I 0.11 tolerated(0.08) benign(0.138) TCGA-BR-4256-01 12 56532561 56532561 G A ESYT1 Missense_Mutation p.G825S 0.15 tolerated(1) benign(0.421) TCGA-BR-4256-01 12 56811689 56811689 A G TIMELESS Splice_Site p.X1186_splice 0.20 TCGA-BR-4256-01 12 56817369 56817369 G A TIMELESS Missense_Mutation p.R697C 0.13 deleterious(0) probably_damaging(0.985) TCGA-BR-4256-01 12 57128007 57128007 T C PRIM1 Silent p.A389A 0.14 TCGA-BR-4256-01 12 57850545 57850546 CT - INHBE Frame_Shift_Del p.L325Pfs*6 0.12 TCGA-BR-4256-01 12 57906639 57906639 A G MARS Missense_Mutation p.Y620C 0.16 deleterious(0) probably_damaging(0.991) TCGA-BR-4256-01 12 6131131 6131131 G A VWF Silent p.G1203G 0.11 TCGA-BR-4256-01 12 6161758 6161758 C T VWF Missense_Mutation p.G713S 0.16 deleterious(0) probably_damaging(0.994) TCGA-BR-4256-01 12 6749364 6749364 G A ACRBP Silent p.Y429Y 0.20 TCGA-BR-4256-01 12 6777029 6777029 G - ZNF384 Frame_Shift_Del p.Q529Rfs*20 0.21 TCGA-BR-4256-01 12 68051258 68051258 C T DYRK2 Missense_Mutation p.R191C 0.12 deleterious(0.04) probably_damaging(0.989) TCGA-BR-4256-01 12 68052038 68052038 C T DYRK2 Nonsense_Mutation p.R451* 0.20 TCGA-BR-4256-01 12 6981674 6981674 C T SPSB2 Nonsense_Mutation p.W131* 0.19 TCGA-BR-4256-01 12 7249058 7249058 C A C1RL Missense_Mutation p.G465W 0.22 deleterious(0) probably_damaging(0.997) TCGA-BR-4256-01 12 76739774 76739774 G A BBS10 Missense_Mutation p.A664V 0.15 deleterious(0.02) possibly_damaging(0.642) TCGA-BR-4256-01 12 76780391 76780392 - T OSBPL8 Frame_Shift_Ins p.W468Mfs*8 0.13 TCGA-BR-4256-01 12 78400518 78400518 G A NAV3 Silent p.P400P 0.16 TCGA-BR-4256-01 12 88584242 88584242 A - TMTC3 Frame_Shift_Del p.K518Nfs*11 0.14 TCGA-BR-4256-01 12 94631565 94631565 C A PLXNC1 Silent p.T702T 0.13 TCGA-BR-4256-01 12 96412962 96412962 G A LTA4H Missense_Mutation p.A232V 0.18 deleterious(0.04) benign(0.321) TCGA-BR-4256-01 13 101742086 101742086 A - NALCN Frame_Shift_Del p.F1139Lfs*7 0.16 TCGA-BR-4256-01 13 103281921 103281921 C T TPP2 Missense_Mutation p.T369I 0.18 deleterious(0) probably_damaging(0.991) TCGA-BR-4256-01 13 106142341 106142341 C T DAOA Missense_Mutation p.P125S 0.29 tolerated_low_confidence(0.32) possibly_damaging(0.803) TCGA-BR-4256-01 13 111083146 111083146 G T COL4A2 Intron 0.10 TCGA-BR-4256-01 13 113478731 113478731 C T ATP11A Silent p.A288A 0.19 TCGA-BR-4256-01 13 114265347 114265347 T A TFDP1 Missense_Mutation p.F17I 0.14 deleterious(0.01) benign(0.175) TCGA-BR-4256-01 13 114514859 114514859 C - TMEM255B Frame_Shift_Del p.Y324Tfs*9 0.21 TCGA-BR-4256-01 13 114751195 114751195 G - RASA3 Frame_Shift_Del p.Q774Rfs*7 0.21 TCGA-BR-4256-01 13 20221160 20221160 G A MPHOSPH8 Missense_Mutation p.S316N 0.12 deleterious_low_confidence(0.01) benign(0.021) TCGA-BR-4256-01 13 21396376 21396376 C T XPO4 Missense_Mutation p.C298Y 0.12 deleterious(0) probably_damaging(0.999) TCGA-BR-4256-01 13 23906662 23906662 T - SACS Frame_Shift_Del p.R3785Gfs*13 0.12 TCGA-BR-4256-01 13 23909221 23909222 - T SACS Frame_Shift_Ins p.R2932Tfs*7 0.09 TCGA-BR-4256-01 13 23915477 23915477 T - SACS Frame_Shift_Del p.K846Nfs*10 0.15 TCGA-BR-4256-01 13 24515468 24515468 T - ANKRD20A19P RNA 0.14 TCGA-BR-4256-01 13 25077812 25077812 C T PARP4 Missense_Mutation p.G35R 0.10 deleterious(0) probably_damaging(1) TCGA-BR-4256-01 13 25745590 25745590 G A AMER2 Silent p.A56A 0.24 TCGA-BR-4256-01 13 28014376 28014377 - T MTIF3 Frame_Shift_Ins p.N71Efs*2 0.10 TCGA-BR-4256-01 13 29598991 29598991 G A MTUS2 Silent p.K62K 0.11 TCGA-BR-4256-01 13 31719831 31719831 T C HSPH1 Missense_Mutation p.N485D 0.17 tolerated(0.08) probably_damaging(0.998) TCGA-BR-4256-01 13 33258137 33258137 A T PDS5B Nonsense_Mutation p.R394* 0.15 TCGA-BR-4256-01 13 33344698 33344698 G T PDS5B Missense_Mutation p.R1355I 0.07 deleterious_low_confidence(0.04) benign(0.277) TCGA-BR-4256-01 13 36905589 36905589 C A SPG20 Missense_Mutation p.D319Y 0.19 deleterious(0.01) benign(0.211) TCGA-BR-4256-01 13 37012843 37012843 C T CCNA1 Silent p.R244R 0.16 TCGA-BR-4256-01 13 37618213 37618213 A G SUPT20H Splice_Site p.X132_splice 0.17 TCGA-BR-4256-01 13 38158194 38158194 C T POSTN Silent p.T385T 0.12 TCGA-BR-4256-01 13 39263555 39263555 C T FREM2 Missense_Mutation p.R692C 0.11 deleterious(0.01) possibly_damaging(0.613) TCGA-BR-4256-01 13 41495656 41495656 C T SUGT1P3 RNA 0.18 TCGA-BR-4256-01 13 41650292 41650292 G A WBP4 Silent p.S225S 0.16 TCGA-BR-4256-01 13 42303703 42303703 T A VWA8 Silent p.L871L 0.07 TCGA-BR-4256-01 13 42407654 42407654 C T VWA8 Missense_Mutation p.R480H 0.16 deleterious(0) probably_damaging(0.992) TCGA-BR-4256-01 13 42793377 42793377 G A DGKH Silent p.S1075S 0.16 TCGA-BR-4256-01 13 42873774 42873774 T - AKAP11 Frame_Shift_Del p.S300Rfs*30 0.11 TCGA-BR-4256-01 13 45554925 45554925 A - NUFIP1 Frame_Shift_Del p.C176Vfs*27 0.17 TCGA-BR-4256-01 13 50108142 50108142 A - RCBTB1 3'UTR 0.14 TCGA-BR-4256-01 13 73369613 73369613 G A PIBF1 Missense_Mutation p.R157H 0.12 tolerated(0.12) benign(0.013) TCGA-BR-4256-01 13 76100679 76100679 C A COMMD6 3'UTR 0.09 TCGA-BR-4256-01 13 79190057 79190057 A - RNF219 Frame_Shift_Del p.L614Sfs*9 0.23 TCGA-BR-4256-01 13 92345711 92345711 G A GPC5 Missense_Mutation p.R199Q 0.14 tolerated(0.35) benign(0.202) TCGA-BR-4256-01 13 98642694 98642694 C T IPO5 Missense_Mutation p.T209M 0.09 tolerated(0.23) benign(0.066) TCGA-BR-4256-01 13 98828697 98828697 T - RNF113B Frame_Shift_Del p.N265Tfs*43 0.20 TCGA-BR-4256-01 14 100847811 100847811 C T WDR25 Missense_Mutation p.R184W 0.13 deleterious(0.02) benign(0.326) TCGA-BR-4256-01 14 105412736 105412736 G A AHNAK2 Nonsense_Mutation p.Q3018* 0.14 TCGA-BR-4256-01 14 105677548 105677548 T C BRF1 Missense_Mutation p.Y636C 0.19 tolerated(0.06) probably_damaging(0.95) TCGA-BR-4256-01 14 105692604 105692604 T - BRF1 Frame_Shift_Del p.K313Nfs*20 0.13 TCGA-BR-4256-01 14 19988183 19988183 A C POTEM 3'UTR 0.07 TCGA-BR-4256-01 14 20216515 20216515 C G OR4Q3 Missense_Mutation p.P310R 0.12 tolerated_low_confidence(0.14) benign(0.005) TCGA-BR-4256-01 14 20871938 20871938 A G TEP1 Missense_Mutation p.Y380H 0.12 deleterious(0) probably_damaging(1) TCGA-BR-4256-01 14 21561803 21561803 G A ZNF219 5'UTR 0.16 TCGA-BR-4256-01 14 22476151 22476151 G A TRAV19 Silent p.A27A 0.22 TCGA-BR-4256-01 14 24033782 24033782 C T AP1G2 Missense_Mutation p.A304T 0.11 tolerated(0.08) benign(0.014) TCGA-BR-4256-01 14 24664214 24664214 T C TM9SF1 Silent p.V4V 0.09 TCGA-BR-4256-01 14 27064621 27064621 T C NOVA1 Missense_Mutation p.Y92C 0.17 deleterious(0) unknown(0) TCGA-BR-4256-01 14 31582339 31582339 T - HECTD1 Frame_Shift_Del p.I2041Lfs*27 0.21 TCGA-BR-4256-01 14 32561215 32561215 G A ARHGAP5 Missense_Mutation p.G447E 0.09 deleterious(0) probably_damaging(0.922) TCGA-BR-4256-01 14 32561281 32561281 C T ARHGAP5 Missense_Mutation p.A469V 0.15 tolerated(0.32) benign(0.206) TCGA-BR-4256-01 14 32623920 32623920 A G ARHGAP5 Silent p.R1425R 0.19 TCGA-BR-4256-01 14 37145642 37145642 G A PAX9 Silent p.T337T 0.18 TCGA-BR-4256-01 14 39650999 39650999 C T PNN Nonsense_Mutation p.R696* 0.14 TCGA-BR-4256-01 14 45432443 45432443 T G FAM179B Silent p.S273S 0.21 TCGA-BR-4256-01 14 45599948 45599948 T G FKBP3 Missense_Mutation p.N55T 0.10 tolerated(0.12) benign(0.01) TCGA-BR-4256-01 14 50585272 50585274 AGG - SOS2 In_Frame_Del p.P1263del 0.21 TCGA-BR-4256-01 14 52520915 52520915 G A NID2 Missense_Mutation p.R298C 0.18 tolerated(0.08) benign(0.443) TCGA-BR-4256-01 14 52735271 52735271 C T PTGDR Missense_Mutation p.R247C 0.11 tolerated(0.05) benign(0.436) TCGA-BR-4256-01 14 56757145 56757145 A G PELI2 Missense_Mutation p.T223A 0.11 deleterious(0.01) possibly_damaging(0.895) TCGA-BR-4256-01 14 59930803 59930803 G A GPR135 Missense_Mutation p.A381V 0.14 deleterious(0.02) probably_damaging(0.998) TCGA-BR-4256-01 14 60074086 60074086 G A RTN1 Silent p.A630A 0.14 TCGA-BR-4256-01 14 60976498 60976498 G A SIX6 Missense_Mutation p.G128S 0.19 deleterious(0) possibly_damaging(0.899) TCGA-BR-4256-01 14 63417018 63417018 C T KCNH5 Missense_Mutation p.R401H 0.13 tolerated(0.21) possibly_damaging(0.874) TCGA-BR-4256-01 14 64518919 64518919 C T SYNE2 Missense_Mutation p.S2763L 0.10 benign(0.014) TCGA-BR-4256-01 14 65208660 65208660 C T PLEKHG3 Missense_Mutation p.R753C 0.10 deleterious(0.04) benign(0.069) TCGA-BR-4256-01 14 70855266 70855266 C T SYNJ2BP Missense_Mutation p.G41D 0.14 deleterious(0) probably_damaging(0.998) TCGA-BR-4256-01 14 73538375 73538375 G A RBM25 Missense_Mutation p.R9H 0.17 probably_damaging(0.948) TCGA-BR-4256-01 14 73717674 73717675 - G PAPLN Frame_Shift_Ins p.D178* 0.26 TCGA-BR-4256-01 14 74449797 74449797 T - ENTPD5 Frame_Shift_Del p.K122Rfs*6 0.16 TCGA-BR-4256-01 14 74874351 74874351 T C SYNDIG1L Missense_Mutation p.T202A 0.16 tolerated(1) benign(0.017) TCGA-BR-4256-01 14 75230817 75230819 TCC - YLPM1 In_Frame_Del p.S214del 0.11 TCGA-BR-4256-01 14 81251580 81251580 C T CEP128 Missense_Mutation p.A624T 0.12 tolerated(0.42) benign(0.015) TCGA-BR-4256-01 14 89073629 89073629 T A ZC3H14 Missense_Mutation p.L597H 0.13 deleterious(0) probably_damaging(0.978) TCGA-BR-4256-01 14 89153571 89153571 G - EML5 Frame_Shift_Del p.P948Qfs*19 0.22 TCGA-BR-4256-01 14 89878829 89878829 A T FOXN3 5'UTR 0.17 TCGA-BR-4256-01 14 91773527 91773527 C T CCDC88C Missense_Mutation p.G1017E 0.18 tolerated(1) possibly_damaging(0.611) TCGA-BR-4256-01 14 94936051 94936051 G A SERPINA9 Nonsense_Mutation p.Q61* 0.14 TCGA-BR-4256-01 14 94964289 94964289 T G SERPINA12 Missense_Mutation p.K149T 0.13 deleterious(0.04) benign(0.093) TCGA-BR-4256-01 14 95090098 95090098 G A SERPINA3 Missense_Mutation p.D407N 0.16 tolerated(0.66) benign(0.005) TCGA-BR-4256-01 14 96731010 96731011 - C BDKRB1 Frame_Shift_Ins p.K333* 0.14 TCGA-BR-4256-01 15 101188577 101188577 T C ASB7 Silent p.C289C 0.16 TCGA-BR-4256-01 15 27772702 27772702 C T GABRG3 Missense_Mutation p.A330V 0.12 deleterious(0) probably_damaging(0.999) TCGA-BR-4256-01 15 28422236 28422236 T C HERC2 Missense_Mutation p.T3098A 0.12 benign(0.02) TCGA-BR-4256-01 15 34130674 34130674 C A RYR3 Missense_Mutation p.L4165I 0.19 benign(0.003) TCGA-BR-4256-01 15 34396075 34396075 A G PGBD4 Missense_Mutation p.H448R 0.13 tolerated_low_confidence(0.84) benign(0.004) TCGA-BR-4256-01 15 34646818 34646818 C T NUTM1 Missense_Mutation p.S388L 0.17 tolerated(0.26) benign(0.029) TCGA-BR-4256-01 15 34654982 34654982 C T LPCAT4 Splice_Site p.X267_splice 0.13 TCGA-BR-4256-01 15 34673666 34673666 G A GOLGA8A Silent p.S586S 0.16 TCGA-BR-4256-01 15 35163101 35163101 A G AQR Missense_Mutation p.V1207A 0.16 tolerated(0.25) benign(0.011) TCGA-BR-4256-01 15 35202476 35202476 G A AQR Missense_Mutation p.A508V 0.11 deleterious(0) probably_damaging(0.993) TCGA-BR-4256-01 15 37109974 37109974 A G CSNK1A1P1 RNA 0.11 TCGA-BR-4256-01 15 40254062 40254062 G T EIF2AK4 Missense_Mutation p.S274I 0.10 tolerated(0.09) benign(0.034) TCGA-BR-4256-01 15 41379814 41379814 G A INO80 Missense_Mutation p.R202W 0.13 deleterious(0) probably_damaging(0.999) TCGA-BR-4256-01 15 41501740 41501742 CTT - EXD1 In_Frame_Del p.E106del 0.26 TCGA-BR-4256-01 15 42742968 42742969 - T ZNF106 Frame_Shift_Ins p.T478Nfs*21 0.15 TCGA-BR-4256-01 15 43910158 43910158 G - STRC Frame_Shift_Del p.P154Lfs*30 0.14 TCGA-BR-4256-01 15 44175946 44175946 C T FRMD5 Missense_Mutation p.V364I 0.09 tolerated(0.25) benign(0.058) TCGA-BR-4256-01 15 48577440 48577440 A - SLC12A1 Frame_Shift_Del p.D877Mfs*46 0.13 TCGA-BR-4256-01 15 51514600 51514600 G A CYP19A1 Missense_Mutation p.R192C 0.12 tolerated(0.07) probably_damaging(1) TCGA-BR-4256-01 15 51780824 51780825 - A DMXL2 Frame_Shift_Ins p.Q1658Sfs*5 0.10 TCGA-BR-4256-01 15 52877031 52877031 T C FAM214A Silent p.V996V 0.12 TCGA-BR-4256-01 15 55652559 55652559 C T CCPG1 Missense_Mutation p.G471D 0.10 tolerated(0.51) benign(0.087) TCGA-BR-4256-01 15 55912260 55912260 C T PRTG Missense_Mutation p.D1135N 0.11 tolerated_low_confidence(0.23) benign(0.007) TCGA-BR-4256-01 15 57731440 57731440 A C CGNL1 Missense_Mutation p.S415R 0.12 tolerated(0.06) benign(0.116) TCGA-BR-4256-01 15 58430696 58430696 T A AQP9 5'UTR 0.12 TCGA-BR-4256-01 15 62950012 62950012 G A TLN2 Missense_Mutation p.E235K 0.14 tolerated(0.07) benign(0.065) TCGA-BR-4256-01 15 65868694 65868695 - A PTPLAD1 Frame_Shift_Ins p.K359Efs*10 0.16 TCGA-BR-4256-01 15 72456008 72456008 A G GRAMD2 Missense_Mutation p.S231P 0.18 tolerated(0.11) benign(0.001) TCGA-BR-4256-01 15 74425657 74425657 G A ISLR2 Missense_Mutation p.G188S 0.19 tolerated(1) benign(0.001) TCGA-BR-4256-01 15 75012940 75012940 G A CYP1A1 Missense_Mutation p.R477W 0.15 deleterious(0) possibly_damaging(0.846) TCGA-BR-4256-01 15 75772249 75772249 A G PTPN9 Missense_Mutation p.Y357H 0.14 deleterious(0) probably_damaging(1) TCGA-BR-4256-01 15 77906539 77906539 G A LINGO1 Silent p.G570G 0.24 TCGA-BR-4256-01 15 78921959 78921959 G A CHRNB4 Missense_Mutation p.R230C 0.18 deleterious(0) probably_damaging(1) TCGA-BR-4256-01 15 81636296 81636296 A G TMC3 Silent p.L537L 0.14 TCGA-BR-4256-01 15 82444608 82444608 A G EFTUD1 Silent p.P729P 0.05 TCGA-BR-4256-01 15 83424779 83424779 C A FSD2 3'UTR 0.17 TCGA-BR-4256-01 15 85163909 85163909 G A ZSCAN2 Silent p.S161S 0.17 TCGA-BR-4256-01 15 85487996 85487996 A G SLC28A1 Missense_Mutation p.Y591C 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-BR-4256-01 15 88679207 88679207 T C NTRK3 Missense_Mutation p.D277G 0.08 tolerated(0.3) probably_damaging(1) TCGA-BR-4256-01 15 90286554 90286554 G A WDR93 Missense_Mutation p.E665K 0.17 tolerated(0.83) benign(0.016) TCGA-BR-4256-01 15 96877465 96877465 G A NR2F2 Missense_Mutation p.M201I 0.12 tolerated(0.21) benign(0.021) TCGA-BR-4256-01 16 108543 108543 G T RHBDF1 Silent p.P788P 0.15 TCGA-BR-4256-01 16 11785695 11785695 C T TXNDC11 Missense_Mutation p.G451R 0.14 tolerated(0.28) benign(0.016) TCGA-BR-4256-01 16 13329283 13329283 G C SHISA9 3'UTR 0.27 TCGA-BR-4256-01 16 14340951 14340951 C T MKL2 Missense_Mutation p.R612W 0.15 deleterious(0.02) possibly_damaging(0.761) TCGA-BR-4256-01 16 14766560 14766560 C A PLA2G10 Missense_Mutation p.Q134H 0.05 deleterious(0.02) probably_damaging(0.92) TCGA-BR-4256-01 16 14958558 14958558 A G NOMO1 Silent p.S504S 0.16 TCGA-BR-4256-01 16 15690614 15690614 T - KIAA0430 Frame_Shift_Del p.K1722Sfs*15 0.16 TCGA-BR-4256-01 16 15704907 15704907 C T KIAA0430 Missense_Mutation p.V1226I 0.19 tolerated(0.32) benign(0.002) TCGA-BR-4256-01 16 1817232 1817232 C T MAPK8IP3 Silent p.Y1056Y 0.11 TCGA-BR-4256-01 16 1827807 1827807 C T SPSB3 Missense_Mutation p.G221D 0.20 deleterious(0) probably_damaging(1) TCGA-BR-4256-01 16 23200704 23200704 T C SCNN1G Silent p.V110V 0.10 TCGA-BR-4256-01 16 24580751 24580751 A G RBBP6 Missense_Mutation p.T914A 0.15 tolerated_low_confidence(0.24) unknown(0) TCGA-BR-4256-01 16 27460161 27460161 T G IL21R Missense_Mutation p.C392G 0.14 deleterious(0.02) possibly_damaging(0.804) TCGA-BR-4256-01 16 29825839 29825839 A G PRRT2 Silent p.A355A 0.27 TCGA-BR-4256-01 16 29842329 29842329 G A MVP Missense_Mutation p.A86T 0.11 deleterious(0) benign(0.17) TCGA-BR-4256-01 16 30100495 30100495 G A TBX6 Silent p.G130G 0.18 TCGA-BR-4256-01 16 3021725 3021725 C A PAQR4 Missense_Mutation p.P200T 0.12 deleterious(0.01) probably_damaging(0.986) TCGA-BR-4256-01 16 30409177 30409177 G A ZNF48 Silent p.R202R 0.13 TCGA-BR-4256-01 16 31161349 31161349 C A PRSS36 Missense_Mutation p.R3L 0.20 deleterious_low_confidence(0.01) benign(0.024) TCGA-BR-4256-01 16 3591887 3591887 C T NLRC3 Missense_Mutation p.G1092R 0.21 deleterious(0) probably_damaging(0.993) TCGA-BR-4256-01 16 3656500 3656500 A C SLX4 Silent p.P245P 0.05 TCGA-BR-4256-01 16 3790455 3790455 G A CREBBP Nonsense_Mutation p.R1360* 0.07 TCGA-BR-4256-01 16 48227793 48227793 C T ABCC11 Silent p.S835S 0.20 TCGA-BR-4256-01 16 53682876 53682876 C T RPGRIP1L Silent p.S768S 0.12 TCGA-BR-4256-01 16 55513508 55513508 C T MMP2 Silent p.G39G 0.17 TCGA-BR-4256-01 16 55880490 55880490 G A CES5A Missense_Mutation p.P563L 0.15 tolerated(0.23) benign(0.003) TCGA-BR-4256-01 16 55893464 55893464 G A CES5A Missense_Mutation p.P380S 0.13 tolerated(0.05) possibly_damaging(0.674) TCGA-BR-4256-01 16 56660687 56660687 G T MT1E Intron 0.27 TCGA-BR-4256-01 16 57054633 57054633 C A NLRC5 Silent p.P3P 0.19 TCGA-BR-4256-01 16 57507884 57507884 C T DOK4 Missense_Mutation p.V223I 0.21 deleterious(0) probably_damaging(0.995) TCGA-BR-4256-01 16 58074522 58074522 T C MMP15 Missense_Mutation p.M277T 0.12 deleterious(0) probably_damaging(1) TCGA-BR-4256-01 16 618400 618400 G A NHLRC4 Missense_Mutation p.G118D 0.19 tolerated_low_confidence(0.3) benign(0.04) TCGA-BR-4256-01 16 66600818 66600818 G A CMTM1 Silent p.S134S 0.14 TCGA-BR-4256-01 16 67645339 67645339 A - CTCF Frame_Shift_Del p.T204Qfs*18 0.15 TCGA-BR-4256-01 16 67763726 67763726 C T RANBP10 Missense_Mutation p.R335Q 0.09 deleterious(0.03) probably_damaging(0.996) TCGA-BR-4256-01 16 69184536 69184536 C T CIRH1A Missense_Mutation p.R279W 0.16 deleterious(0) probably_damaging(0.999) TCGA-BR-4256-01 16 70503177 70503177 C T FUK Silent p.S302S 0.15 TCGA-BR-4256-01 16 71483393 71483393 A G ZNF23 Missense_Mutation p.C179R 0.14 tolerated(0.36) benign(0.002) TCGA-BR-4256-01 16 71483562 71483562 A - ZNF23 Frame_Shift_Del p.F122Lfs*35 0.19 TCGA-BR-4256-01 16 71668169 71668170 - T MARVELD3 Intron 0.14 TCGA-BR-4256-01 16 71712666 71712666 C A PHLPP2 Silent p.V420V 0.17 TCGA-BR-4256-01 16 739536 739536 G A WDR24 Silent p.C35C 0.21 TCGA-BR-4256-01 16 75563303 75563303 T G CHST5 Missense_Mutation p.N327T 0.12 tolerated(0.05) probably_damaging(0.996) TCGA-BR-4256-01 16 78466617 78466617 T C WWOX Missense_Mutation p.F342L 0.13 deleterious(0.02) benign(0.151) TCGA-BR-4256-01 16 81303868 81303868 C T BCMO1 Silent p.D316D 0.20 TCGA-BR-4256-01 16 84520637 84520637 C T TLDC1 Nonsense_Mutation p.W186* 0.16 TCGA-BR-4256-01 16 87446254 87446254 G T ZCCHC14 Missense_Mutation p.S554R 0.11 tolerated_low_confidence(0.37) possibly_damaging(0.467) TCGA-BR-4256-01 16 8866730 8866730 G A ABAT Missense_Mutation p.A304T 0.11 deleterious(0) probably_damaging(0.999) TCGA-BR-4256-01 16 89774889 89774889 C T VPS9D1 Missense_Mutation p.G583D 0.24 tolerated(0.2) benign(0.015) TCGA-BR-4256-01 16 89986504 89986504 T C MC1R Missense_Mutation p.F280L 0.23 deleterious(0.01) benign(0.068) TCGA-BR-4256-01 16 984305 984305 A - LMF1 Intron 0.14 TCGA-BR-4256-01 17 1581900 1581900 G A PRPF8 Missense_Mutation p.T589M 0.16 deleterious(0) probably_damaging(0.987) TCGA-BR-4256-01 17 16049688 16049688 A G NCOR1 Splice_Site p.X361_splice 0.14 TCGA-BR-4256-01 17 17721064 17721064 G A SREBF1 Silent p.S480S 0.16 TCGA-BR-4256-01 17 17754256 17754256 G A TOM1L2 Missense_Mutation p.A430V 0.28 tolerated(0.29) benign(0.002) TCGA-BR-4256-01 17 20108736 20108736 T C SPECC1 Silent p.T458T 0.10 TCGA-BR-4256-01 17 2203279 2203279 C T SMG6 Silent p.T256T 0.20 TCGA-BR-4256-01 17 2239337 2239339 CTT - TSR1 In_Frame_Del p.K65del 0.15 TCGA-BR-4256-01 17 26821104 26821104 A G SLC13A2 Silent p.P438P 0.13 TCGA-BR-4256-01 17 27421841 27421841 T C MYO18A Missense_Mutation p.T1513A 0.20 tolerated(0.58) benign(0.029) TCGA-BR-4256-01 17 29677318 29677318 A G NF1 Missense_Mutation p.H2480R 0.14 tolerated_low_confidence(0.52) benign(0.029) TCGA-BR-4256-01 17 30815316 30815316 G A CDK5R1 Silent p.L226L 0.19 TCGA-BR-4256-01 17 31324543 31324543 T C SPACA3 Splice_Site p.X194_splice 0.14 TCGA-BR-4256-01 17 33313055 33313055 A G LIG3 Missense_Mutation p.Q199R 0.12 tolerated(0.09) benign(0.055) TCGA-BR-4256-01 17 37009243 37009243 A G RPL23 Intron 0.24 TCGA-BR-4256-01 17 37455302 37455302 C T FBXL20 Silent p.G90G 0.10 TCGA-BR-4256-01 17 38191589 38191589 C T MED24 Missense_Mutation p.A114T 0.21 tolerated(0.27) benign(0.219) TCGA-BR-4256-01 17 38562635 38562635 C T TOP2A Splice_Site p.X651_splice 0.14 TCGA-BR-4256-01 17 39871806 39871806 A G GAST Missense_Mutation p.R40G 0.20 tolerated_low_confidence(0.14) possibly_damaging(0.849) TCGA-BR-4256-01 17 39925443 39925443 G A JUP Missense_Mutation p.A162V 0.17 deleterious(0.04) benign(0.25) TCGA-BR-4256-01 17 39975515 39975515 G A FKBP10 Missense_Mutation p.V261M 0.16 tolerated(0.06) benign(0.19) TCGA-BR-4256-01 17 40359573 40359573 T C STAT5B Intron 0.15 TCGA-BR-4256-01 17 40714445 40714445 C T COASY Missense_Mutation p.L6F 0.21 tolerated_low_confidence(0.37) benign(0) TCGA-BR-4256-01 17 40849679 40849679 C T CNTNAP1 Nonsense_Mutation p.R1226* 0.21 TCGA-BR-4256-01 17 41143805 41143805 C T RUNDC1 3'UTR 0.21 TCGA-BR-4256-01 17 41570257 41570257 C T DHX8 Missense_Mutation p.R238W 0.14 deleterious(0) possibly_damaging(0.539) TCGA-BR-4256-01 17 42030346 42030346 G A PYY Missense_Mutation p.S91L 0.20 tolerated(0.56) benign(0.079) TCGA-BR-4256-01 17 43322710 43322710 T C FMNL1 Missense_Mutation p.M940T 0.12 tolerated(0.68) benign(0.055) TCGA-BR-4256-01 17 45734321 45734321 G A KPNB1 Nonsense_Mutation p.W126* 0.10 TCGA-BR-4256-01 17 48070879 48070879 G A DLX3 Missense_Mutation p.T134M 0.24 deleterious(0) probably_damaging(0.996) TCGA-BR-4256-01 17 4836563 4836563 C A GP1BA Missense_Mutation p.P222T 0.08 tolerated(0.37) probably_damaging(0.964) TCGA-BR-4256-01 17 53488653 53488653 T C MMD Silent p.V78V 0.11 TCGA-BR-4256-01 17 59479301 59479301 A G TBX2 Missense_Mutation p.K218E 0.09 deleterious(0) probably_damaging(0.981) TCGA-BR-4256-01 17 59989018 59989018 A G INTS2 Silent p.L281L 0.10 TCGA-BR-4256-01 17 61972426 61972426 G A CSH1 Missense_Mutation p.R204C 0.12 deleterious(0.01) benign(0.329) TCGA-BR-4256-01 17 6328975 6328975 C T AIPL1 Silent p.R320R 0.16 TCGA-BR-4256-01 17 6607266 6607266 C A SLC13A5 Nonsense_Mutation p.E160* 0.21 TCGA-BR-4256-01 17 7077743 7077743 A G ASGR1 Missense_Mutation p.V131A 0.38 tolerated(0.84) benign(0.05) TCGA-BR-4256-01 17 7230998 7230998 C T NEURL4 Missense_Mutation p.R163H 0.10 deleterious(0) possibly_damaging(0.765) TCGA-BR-4256-01 17 725693 725693 G A NXN Missense_Mutation p.P206L 0.11 deleterious(0) probably_damaging(0.989) TCGA-BR-4256-01 17 72832360 72832361 - CG TMEM104 Frame_Shift_Ins p.C345Afs*31 0.11 TCGA-BR-4256-01 17 73836367 73836367 C T UNC13D Missense_Mutation p.R266H 0.37 deleterious(0.03) possibly_damaging(0.77) TCGA-BR-4256-01 17 74622385 74622386 - T ST6GALNAC1 Frame_Shift_Ins p.N467Kfs*41 0.24 TCGA-BR-4256-01 17 74732182 74732182 C - SRSF2 3'UTR 0.13 TCGA-BR-4256-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.17 deleterious(0) probably_damaging(0.998) TCGA-BR-4256-01 17 76475713 76475713 C T DNAH17 Missense_Mutation p.R2571H 0.12 probably_damaging(0.999) TCGA-BR-4256-01 17 76795011 76795011 G A USP36 Silent p.D1073D 0.22 TCGA-BR-4256-01 17 78268635 78268635 G A RNF213 Missense_Mutation p.A530T 0.16 benign(0.152) TCGA-BR-4256-01 17 78447193 78447193 C T NPTX1 Missense_Mutation p.R235Q 0.13 deleterious(0.03) possibly_damaging(0.499) TCGA-BR-4256-01 17 79667727 79667727 C T HGS Silent p.N673N 0.14 TCGA-BR-4256-01 17 79865653 79865653 C G PCYT2 Missense_Mutation p.S163T 0.18 tolerated(0.47) benign(0.003) TCGA-BR-4256-01 17 80545092 80545092 A - FOXK2 Frame_Shift_Del p.N578Tfs*16 0.15 TCGA-BR-4256-01 18 20516850 20516850 C A RBBP8 Missense_Mutation p.N12K 0.16 tolerated(0.21) benign(0.118) TCGA-BR-4256-01 18 25532148 25532148 A T CDH2 Missense_Mutation p.L897H 0.14 deleterious(0) probably_damaging(1) TCGA-BR-4256-01 18 31318982 31318982 A C ASXL3 Missense_Mutation p.E538D 0.10 benign(0.005) TCGA-BR-4256-01 18 3215000 3215000 C T MYOM1 Silent p.S74S 0.16 TCGA-BR-4256-01 18 34174854 34174854 G A FHOD3 Silent p.T237T 0.14 TCGA-BR-4256-01 18 3814196 3814196 G A DLGAP1 Silent p.G345G 0.13 TCGA-BR-4256-01 18 43497754 43497754 T C EPG5 Silent p.P1043P 0.15 TCGA-BR-4256-01 18 44036642 44036642 C - RNF165 3'UTR 0.12 TCGA-BR-4256-01 18 44560001 44560001 G A TCEB3B Silent p.S545S 0.19 TCGA-BR-4256-01 18 47488638 47488638 T C MYO5B Missense_Mutation p.K515E 0.10 deleterious(0.02) probably_damaging(0.992) TCGA-BR-4256-01 18 48190774 48190774 A G MAPK4 Missense_Mutation p.D149G 0.13 deleterious(0) probably_damaging(0.999) TCGA-BR-4256-01 18 50866217 50866217 C A DCC Missense_Mutation p.P767T 0.12 deleterious(0) probably_damaging(1) TCGA-BR-4256-01 18 51888064 51888064 G C C18orf54 Missense_Mutation p.R112T 0.16 deleterious(0.01) probably_damaging(0.943) TCGA-BR-4256-01 18 54424020 54424020 T - WDR7 Frame_Shift_Del p.L734* 0.14 TCGA-BR-4256-01 18 56203863 56203863 G A ALPK2 Missense_Mutation p.R1186C 0.11 deleterious(0.04) benign(0.443) TCGA-BR-4256-01 18 56204614 56204614 G T ALPK2 Missense_Mutation p.S935R 0.21 tolerated(0.22) possibly_damaging(0.51) TCGA-BR-4256-01 18 58038752 58038752 A G MC4R Silent p.C277C 0.15 TCGA-BR-4256-01 18 59742043 59742043 A G PIGN Missense_Mutation p.I863T 0.16 deleterious(0.05) benign(0.171) TCGA-BR-4256-01 18 72998236 72998236 C T TSHZ1 Missense_Mutation p.R247C 0.08 deleterious(0) probably_damaging(1) TCGA-BR-4256-01 18 73122769 73122769 G A SMIM21 3'UTR 0.11 TCGA-BR-4256-01 18 74616365 74616365 T - ZNF236 Frame_Shift_Del p.F641Sfs*70 0.11 TCGA-BR-4256-01 18 76757273 76757273 G A SALL3 Missense_Mutation p.R1285H 0.19 tolerated(0.29) probably_damaging(0.993) TCGA-BR-4256-01 18 8793004 8793004 C - SOGA2 Frame_Shift_Del p.V635Ffs*9 0.18 TCGA-BR-4256-01 18 9256207 9256207 A - ANKRD12 Frame_Shift_Del p.K983Nfs*4 0.20 TCGA-BR-4256-01 19 10071325 10071325 A G COL5A3 Splice_Site p.X1697_splice 0.24 TCGA-BR-4256-01 19 10220665 10220665 C A PPAN Missense_Mutation p.R223S 0.16 tolerated(0.08) probably_damaging(0.999) TCGA-BR-4256-01 19 10503997 10503997 G A CDC37 Missense_Mutation p.R283C 0.16 deleterious(0) possibly_damaging(0.76) TCGA-BR-4256-01 19 10738420 10738420 T C SLC44A2 Missense_Mutation p.C37R 0.09 deleterious(0) probably_damaging(0.921) TCGA-BR-4256-01 19 11531461 11531461 G T CCDC151 3'UTR 0.14 TCGA-BR-4256-01 19 11577547 11577547 G A ELAVL3 Silent p.D35D 0.13 TCGA-BR-4256-01 19 12384634 12384634 A G ZNF44 Missense_Mutation p.C194R 0.13 tolerated(0.09) benign(0.002) TCGA-BR-4256-01 19 12721453 12721453 G T ZNF490 Silent p.P14P 0.12 TCGA-BR-4256-01 19 12856282 12856282 A C ASNA1 Missense_Mutation p.E134A 0.09 deleterious(0.02) possibly_damaging(0.686) TCGA-BR-4256-01 19 1298589 1298589 G A EFNA2 Missense_Mutation p.R165Q 0.16 deleterious(0.01) possibly_damaging(0.87) TCGA-BR-4256-01 19 1438451 1438451 C G RPS15 Intron 0.17 TCGA-BR-4256-01 19 14863294 14863294 G A EMR2 Silent p.S545S 0.31 TCGA-BR-4256-01 19 14876537 14876537 G A EMR2 Silent p.C238C 0.14 TCGA-BR-4256-01 19 15918305 15918305 C T OR10H1 Silent p.V181V 0.13 TCGA-BR-4256-01 19 17327060 17327060 C T USE1 Missense_Mutation p.A105V 0.26 tolerated(0.07) benign(0.035) TCGA-BR-4256-01 19 17450245 17450245 C T GTPBP3 Missense_Mutation p.R303W 0.17 deleterious(0) possibly_damaging(0.888) TCGA-BR-4256-01 19 18085948 18085948 G A KCNN1 Silent p.T150T 0.11 TCGA-BR-4256-01 19 18242839 18242839 G A MAST3 Missense_Mutation p.R489H 0.09 deleterious(0.01) probably_damaging(1) TCGA-BR-4256-01 19 18329753 18329753 A - PDE4C Frame_Shift_Del p.Q355Rfs*6 0.13 TCGA-BR-4256-01 19 19136411 19136411 T A SUGP2 Missense_Mutation p.N249I 0.15 deleterious(0) benign(0.265) TCGA-BR-4256-01 19 19329855 19329855 G A NCAN Missense_Mutation p.A69T 0.25 tolerated(0.4) benign(0.081) TCGA-BR-4256-01 19 19790896 19790896 T C ZNF101 Silent p.Y366Y 0.13 TCGA-BR-4256-01 19 1986617 1986617 A G BTBD2 Missense_Mutation p.L483P 0.25 deleterious(0) probably_damaging(0.987) TCGA-BR-4256-01 19 20808338 20808338 T - ZNF626 Frame_Shift_Del p.G116Dfs*3 0.12 TCGA-BR-4256-01 19 21992491 21992491 T - ZNF43 Frame_Shift_Del p.D117Tfs*36 0.12 TCGA-BR-4256-01 19 23406271 23406271 C T ZNF724P Missense_Mutation p.C259Y 0.19 deleterious(0.01) probably_damaging(0.942) TCGA-BR-4256-01 19 2422198 2422198 C T TMPRSS9 Missense_Mutation p.T800M 0.10 tolerated(0.08) benign(0.133) TCGA-BR-4256-01 19 3028785 3028785 C T TLE2 Missense_Mutation p.G14D 0.09 deleterious(0) probably_damaging(0.93) TCGA-BR-4256-01 19 33535190 33535190 G A RHPN2 Silent p.A50A 0.10 TCGA-BR-4256-01 19 34868778 34868778 G A GPI Missense_Mutation p.A220T 0.16 deleterious_low_confidence(0) probably_damaging(1) TCGA-BR-4256-01 19 37037710 37037710 C T ZNF529 3'UTR 0.10 TCGA-BR-4256-01 19 37406110 37406110 C T ZNF829 Missense_Mutation p.S68N 0.20 tolerated_low_confidence(0.17) unknown(0) TCGA-BR-4256-01 19 38103018 38103018 T - ZNF540 Frame_Shift_Del p.F281Lfs*4 0.22 TCGA-BR-4256-01 19 38939332 38939333 - C RYR1 Frame_Shift_Ins p.E337* 0.20 TCGA-BR-4256-01 19 38939370 38939370 G A RYR1 Missense_Mutation p.V347M 0.13 possibly_damaging(0.88) TCGA-BR-4256-01 19 38948733 38948733 G A RYR1 Silent p.T656T 0.14 TCGA-BR-4256-01 19 3907777 3907777 C T ATCAY Missense_Mutation p.A135V 0.35 tolerated(0.21) possibly_damaging(0.625) TCGA-BR-4256-01 19 39281340 39281340 A C LGALS7B Missense_Mutation p.N36T 0.09 deleterious(0) probably_damaging(0.95) TCGA-BR-4256-01 19 39760138 39760138 G A IFNL2 Missense_Mutation p.R94H 0.13 deleterious(0.03) possibly_damaging(0.889) TCGA-BR-4256-01 19 39976416 39976416 T C TIMM50 Missense_Mutation p.L257P 0.12 deleterious(0) probably_damaging(0.988) TCGA-BR-4256-01 19 40397966 40397966 C T FCGBP Splice_Site p.X2334_splice 0.13 TCGA-BR-4256-01 19 40542152 40542152 T C ZNF780B Missense_Mutation p.H205R 0.15 tolerated(0.76) possibly_damaging(0.507) TCGA-BR-4256-01 19 40715080 40715080 C - MAP3K10 Frame_Shift_Del p.P504Lfs*10 0.32 TCGA-BR-4256-01 19 40834399 40834399 G - C19orf47 Frame_Shift_Del p.R158Gfs*138 0.21 TCGA-BR-4256-01 19 41111033 41111033 T C LTBP4 Silent p.L182L 0.14 TCGA-BR-4256-01 19 41916646 41916646 C T BCKDHA Silent p.N71N 0.14 TCGA-BR-4256-01 19 42585199 42585199 G A ZNF574 Missense_Mutation p.R814H 0.14 tolerated(0.18) probably_damaging(0.96) TCGA-BR-4256-01 19 42796882 42796883 - C CIC Frame_Shift_Ins p.S1117Kfs*34 0.31 TCGA-BR-4256-01 19 4365543 4365543 C T SH3GL1 Silent p.S89S 0.43 TCGA-BR-4256-01 19 44058886 44058886 C T XRCC1 Missense_Mutation p.R109H 0.17 deleterious(0) probably_damaging(1) TCGA-BR-4256-01 19 44096194 44096194 G - IRGQ Frame_Shift_Del p.P619Lfs*17 0.27 TCGA-BR-4256-01 19 4512549 4512549 C T PLIN4 Missense_Mutation p.G461S 0.10 tolerated(0.19) possibly_damaging(0.826) TCGA-BR-4256-01 19 45911872 45911872 A - CD3EAP Frame_Shift_Del p.N218Ifs*4 0.15 TCGA-BR-4256-01 19 45973821 45973821 G A FOSB Intron 0.24 TCGA-BR-4256-01 19 48339652 48339652 G A CRX Splice_Site p.X84_splice 0.09 TCGA-BR-4256-01 19 49442913 49442913 C T DHDH Nonsense_Mutation p.Q192* 0.13 TCGA-BR-4256-01 19 49973741 49973741 A G ALDH16A1 3'UTR 0.27 TCGA-BR-4256-01 19 50265373 50265373 G A TSKS Missense_Mutation p.T96M 0.14 deleterious(0.01) possibly_damaging(0.642) TCGA-BR-4256-01 19 50861861 50861861 G A NAPSA Silent p.R404R 0.23 TCGA-BR-4256-01 19 51410327 51410327 G C KLK4 Missense_Mutation p.P210A 0.22 deleterious(0) probably_damaging(0.999) TCGA-BR-4256-01 19 51503767 51503767 G A KLK8 Missense_Mutation p.A93V 0.09 tolerated(0.74) benign(0.024) TCGA-BR-4256-01 19 51918605 51918605 G - SIGLEC10 Frame_Shift_Del p.P387Qfs*4 0.21 TCGA-BR-4256-01 19 52249649 52249649 A G FPR1 Missense_Mutation p.V200A 0.17 tolerated(0.68) benign(0.009) TCGA-BR-4256-01 19 53056872 53056872 G A ZNF808 Missense_Mutation p.E235K 0.11 tolerated(0.05) benign(0.008) TCGA-BR-4256-01 19 53217351 53217351 G A ZNF611 Missense_Mutation p.A36V 0.14 deleterious(0.01) benign(0.214) TCGA-BR-4256-01 19 53762612 53762612 C T VN1R2 Silent p.Y328Y 0.13 TCGA-BR-4256-01 19 53762736 53762736 C A VN1R2 Missense_Mutation p.R370S 0.12 tolerated(0.11) possibly_damaging(0.597) TCGA-BR-4256-01 19 54660580 54660581 - C LENG1 Frame_Shift_Ins p.K166Efs*8 0.21 TCGA-BR-4256-01 19 54758702 54758702 G A LILRB5 Missense_Mutation p.P384L 0.09 deleterious(0) probably_damaging(0.911) TCGA-BR-4256-01 19 55253679 55253679 C A KIR2DL3 Silent p.P108P 0.09 TCGA-BR-4256-01 19 55489190 55489190 A C NLRP2 Missense_Mutation p.Q132H 0.12 tolerated(0.34) benign(0.001) TCGA-BR-4256-01 19 55889219 55889219 C T TMEM190 Silent p.G90G 0.28 TCGA-BR-4256-01 19 56244332 56244332 G A NLRP9 Missense_Mutation p.H289Y 0.11 tolerated(0.49) possibly_damaging(0.876) TCGA-BR-4256-01 19 56953331 56953331 G T ZNF667 Missense_Mutation p.L345M 0.11 deleterious(0.01) possibly_damaging(0.662) TCGA-BR-4256-01 19 57910578 57910578 C T ZNF548 Missense_Mutation p.P320L 0.06 deleterious(0.02) benign(0.058) TCGA-BR-4256-01 19 58723003 58723003 C T ZNF274 Silent p.T309T 0.14 TCGA-BR-4256-01 19 6924780 6924780 G A EMR1 Missense_Mutation p.R628H 0.11 deleterious(0.02) possibly_damaging(0.751) TCGA-BR-4256-01 19 7755350 7755350 C T FCER2 Missense_Mutation p.R188Q 0.19 deleterious(0.05) benign(0.293) TCGA-BR-4256-01 19 7965621 7965621 G A LRRC8E Silent p.S738S 0.11 TCGA-BR-4256-01 19 8550540 8550540 C T HNRNPM Missense_Mutation p.R410C 0.12 deleterious(0.05) benign(0.003) TCGA-BR-4256-01 19 873579 873579 A G MED16 Missense_Mutation p.I592T 0.13 deleterious(0) possibly_damaging(0.637) TCGA-BR-4256-01 19 8953580 8953580 G A MBD3L1 Missense_Mutation p.A76T 0.16 deleterious(0.02) possibly_damaging(0.722) TCGA-BR-4256-01 19 9047875 9047875 A C MUC16 Silent p.T11252T 0.17 TCGA-BR-4256-01 19 9061285 9061285 A C MUC16 Missense_Mutation p.S8721A 0.14 unknown(0) TCGA-BR-4256-01 19 9085145 9085145 C T MUC16 Missense_Mutation p.A2224T 0.11 unknown(0) TCGA-BR-4256-01 1 100534034 100534034 A - HIAT1 Frame_Shift_Del p.V240Sfs*6 0.16 TCGA-BR-4256-01 1 107937876 107937878 AAG - NTNG1 In_Frame_Del p.K331del 0.15 TCGA-BR-4256-01 1 109538449 109538449 T C WDR47 Missense_Mutation p.K490E 0.20 tolerated(0.05) benign(0.437) TCGA-BR-4256-01 1 109772056 109772057 - A SARS Frame_Shift_Ins p.V106Sfs*6 0.14 TCGA-BR-4256-01 1 111216731 111216731 C T KCNA3 Missense_Mutation p.R234Q 0.15 deleterious(0) possibly_damaging(0.455) TCGA-BR-4256-01 1 111891167 111891167 G T PIFO Missense_Mutation p.Q96H 0.18 deleterious(0) probably_damaging(0.979) TCGA-BR-4256-01 1 115268840 115268841 - A CSDE1 Frame_Shift_Ins p.H591Pfs*4 0.20 TCGA-BR-4256-01 1 117127667 117127667 G A IGSF3 Silent p.R836R 0.21 TCGA-BR-4256-01 1 11856376 11856376 C T MTHFR Missense_Mutation p.D223N 0.09 tolerated(0.09) possibly_damaging(0.477) TCGA-BR-4256-01 1 12058853 12058853 T C MFN2 Missense_Mutation p.L209P 0.14 deleterious(0) benign(0.001) TCGA-BR-4256-01 1 12371978 12371978 G A VPS13D Missense_Mutation p.A2311T 0.13 probably_damaging(0.978) TCGA-BR-4256-01 1 12954532 12954532 C T PRAMEF10 Missense_Mutation p.V251I 0.12 tolerated(0.2) benign(0.001) TCGA-BR-4256-01 1 1325840 1325840 T - CCNL2 Frame_Shift_Del p.K288Rfs*65 0.19 TCGA-BR-4256-01 1 14107072 14107072 G A PRDM2 Missense_Mutation p.G928S 0.09 benign(0.312) TCGA-BR-4256-01 1 1430883 1430883 A G ATAD3B Missense_Mutation p.K545E 0.19 tolerated(1) benign(0) TCGA-BR-4256-01 1 145015901 145015901 G A RP11-326G21.1 5'Flank 0.04 TCGA-BR-4256-01 1 145578385 145578385 C - PIAS3 Frame_Shift_Del p.P118Lfs*12 0.09 TCGA-BR-4256-01 1 151020433 151020433 G A C1orf56 Missense_Mutation p.S37N 0.21 deleterious_low_confidence(0.01) benign(0.017) TCGA-BR-4256-01 1 151021230 151021230 G A C1orf56 Missense_Mutation p.A303T 0.15 tolerated(0.2) benign(0) TCGA-BR-4256-01 1 152081442 152081442 G A TCHH Silent p.R1417R 0.13 TCGA-BR-4256-01 1 152282336 152282336 T C FLG Missense_Mutation p.S1676G 0.14 benign(0.418) TCGA-BR-4256-01 1 152326950 152326950 T C FLG2 Silent p.Q1104Q 0.16 TCGA-BR-4256-01 1 153660672 153660672 C T NPR1 Missense_Mutation p.R798C 0.16 deleterious(0) probably_damaging(0.953) TCGA-BR-4256-01 1 154318344 154318344 G - ATP8B2 Frame_Shift_Del p.V956Sfs*23 0.14 TCGA-BR-4256-01 1 155896918 155896918 C T KIAA0907 Missense_Mutation p.G165D 0.09 deleterious(0) probably_damaging(0.959) TCGA-BR-4256-01 1 155911718 155911718 G A RXFP4 Missense_Mutation p.G73D 0.13 tolerated(0.38) benign(0.172) TCGA-BR-4256-01 1 156146693 156146693 A G SEMA4A Missense_Mutation p.S731G 0.08 deleterious(0.02) benign(0.07) TCGA-BR-4256-01 1 156288680 156288680 T C CCT3 Silent p.E246E 0.10 TCGA-BR-4256-01 1 157772362 157772362 T C FCRL1 Missense_Mutation p.M138V 0.16 tolerated(0.12) benign(0.003) TCGA-BR-4256-01 1 157811521 157811521 A T CD5L 5'UTR 0.13 TCGA-BR-4256-01 1 158061167 158061167 A C KIRREL Missense_Mutation p.N431T 0.15 tolerated(0.18) benign(0.185) TCGA-BR-4256-01 1 158300854 158300854 T C CD1B Splice_Site p.X21_splice 0.12 TCGA-BR-4256-01 1 158435578 158435578 T G OR10K1 Missense_Mutation p.V76G 0.12 deleterious(0) possibly_damaging(0.864) TCGA-BR-4256-01 1 158576839 158576839 T A OR10Z1 Missense_Mutation p.L204H 0.12 deleterious(0) probably_damaging(1) TCGA-BR-4256-01 1 158626424 158626424 G A SPTA1 Missense_Mutation p.A943V 0.14 deleterious(0.05) probably_damaging(0.968) TCGA-BR-4256-01 1 16064618 16064618 C T SLC25A34 Missense_Mutation p.R159W 0.17 deleterious(0.05) probably_damaging(0.93) TCGA-BR-4256-01 1 161026197 161026197 C T ARHGAP30 Missense_Mutation p.R109Q 0.12 tolerated(0.73) possibly_damaging(0.668) TCGA-BR-4256-01 1 161044096 161044096 G A PVRL4 Silent p.I356I 0.15 TCGA-BR-4256-01 1 161049588 161049588 C A PVRL4 Missense_Mutation p.Q77H 0.13 tolerated(0.1) benign(0.248) TCGA-BR-4256-01 1 161130992 161130992 G A USP21 Missense_Mutation p.A188T 0.11 tolerated_low_confidence(0.16) benign(0.012) TCGA-BR-4256-01 1 161141819 161141819 T C B4GALT3 Silent p.T323T 0.06 TCGA-BR-4256-01 1 16256110 16256110 G A SPEN Silent p.E1125E 0.13 TCGA-BR-4256-01 1 163043361 163043361 C A RGS4 Silent p.P206P 0.25 TCGA-BR-4256-01 1 166818499 166818499 A G POGK Missense_Mutation p.E228G 0.14 deleterious(0) probably_damaging(0.988) TCGA-BR-4256-01 1 167402286 167402286 C - CD247 Frame_Shift_Del p.G135Afs*65 0.26 TCGA-BR-4256-01 1 167778957 167778958 - T ADCY10 Frame_Shift_Ins p.N1597Kfs*8 0.13 TCGA-BR-4256-01 1 169388360 169388360 T - CCDC181 Frame_Shift_Del p.K369Rfs*6 0.17 TCGA-BR-4256-01 1 169500040 169500040 T C F5 Missense_Mutation p.Y1731C 0.13 deleterious(0) probably_damaging(0.998) TCGA-BR-4256-01 1 169676575 169676575 C T SELL Nonsense_Mutation p.W176* 0.12 TCGA-BR-4256-01 1 173506088 173506088 G A SLC9C2 Nonsense_Mutation p.Q550* 0.12 TCGA-BR-4256-01 1 173594032 173594033 - T ANKRD45 Frame_Shift_Ins p.N208Kfs*2 0.14 TCGA-BR-4256-01 1 175325484 175325484 C G TNR Missense_Mutation p.S1030T 0.13 deleterious(0) probably_damaging(0.999) TCGA-BR-4256-01 1 176998870 176998870 G A ASTN1 Silent p.S340S 0.15 TCGA-BR-4256-01 1 177937025 177937025 C T SEC16B Missense_Mutation p.G31E 0.15 tolerated(0.12) benign(0.181) TCGA-BR-4256-01 1 178389670 178389670 G T RASAL2 Missense_Mutation p.G197C 0.22 deleterious(0) probably_damaging(1) TCGA-BR-4256-01 1 178494568 178494568 C A TEX35 3'Flank 0.13 TCGA-BR-4256-01 1 17983158 17983158 G A ARHGEF10L Missense_Mutation p.A939T 0.28 deleterious(0.01) possibly_damaging(0.89) TCGA-BR-4256-01 1 182783988 182783988 C T NPL Missense_Mutation p.T120I 0.07 deleterious(0.01) benign(0.367) TCGA-BR-4256-01 1 183177156 183177156 C T LAMC2 Missense_Mutation p.R74W 0.14 deleterious(0.01) benign(0.212) TCGA-BR-4256-01 1 183559359 183559359 G - NCF2 Frame_Shift_Del p.H36Tfs*15 0.16 TCGA-BR-4256-01 1 183938581 183938581 G A COLGALT2 Silent p.Y218Y 0.13 TCGA-BR-4256-01 1 185151116 185151116 A - SWT1 Frame_Shift_Del p.S357Vfs*8 0.13 TCGA-BR-4256-01 1 186305776 186305776 C T TPR Silent p.V1519V 0.10 TCGA-BR-4256-01 1 19166209 19166209 C T TAS1R2 Missense_Mutation p.A802T 0.25 deleterious(0.01) possibly_damaging(0.608) TCGA-BR-4256-01 1 19433101 19433102 - G UBR4 Frame_Shift_Ins p.D4120Gfs*7 0.14 TCGA-BR-4256-01 1 19439226 19439226 C A UBR4 Missense_Mutation p.G3865C 0.13 probably_damaging(0.996) TCGA-BR-4256-01 1 196395022 196395022 G A KCNT2 Nonsense_Mutation p.Q361* 0.14 TCGA-BR-4256-01 1 196716354 196716354 C T CFH Missense_Mutation p.R1203W 0.11 tolerated(0.2) benign(0.001) TCGA-BR-4256-01 1 196762738 196762738 T C CFHR3 3'UTR 0.09 TCGA-BR-4256-01 1 196883716 196883716 C T CFHR4 Silent p.Y423Y 0.19 TCGA-BR-4256-01 1 197144238 197144238 T - ZBTB41 Frame_Shift_Del p.A630Lfs*82 0.12 TCGA-BR-4256-01 1 197145714 197145714 T C ZBTB41 Missense_Mutation p.K620R 0.17 tolerated(0.11) possibly_damaging(0.847) TCGA-BR-4256-01 1 197586803 197586803 C T DENND1B Silent p.L253L 0.08 TCGA-BR-4256-01 1 197890758 197890758 G A LHX9 Silent p.A234A 0.36 TCGA-BR-4256-01 1 200827020 200827020 A - CAMSAP2 Frame_Shift_Del p.M1426* 0.09 TCGA-BR-4256-01 1 201687704 201687704 C T NAV1 Silent p.G349G 0.12 TCGA-BR-4256-01 1 202288285 202288285 G - LGR6 Frame_Shift_Del p.G953Vfs*35 0.21 TCGA-BR-4256-01 1 202394751 202394751 G A PPP1R12B Missense_Mutation p.R200H 0.11 deleterious(0) probably_damaging(0.92) TCGA-BR-4256-01 1 203734672 203734672 C T LAX1 5'UTR 0.15 TCGA-BR-4256-01 1 206821125 206821125 T C DYRK3 Silent p.D194D 0.13 TCGA-BR-4256-01 1 207696973 207696973 C - CR1 Frame_Shift_Del p.T171Pfs*21 0.10 TCGA-BR-4256-01 1 210856804 210856804 C T KCNH1 Missense_Mutation p.R930K 0.22 tolerated_low_confidence(1) benign(0) TCGA-BR-4256-01 1 21091980 21091980 C A HP1BP3 Missense_Mutation p.E260D 0.17 tolerated(0.22) probably_damaging(0.992) TCGA-BR-4256-01 1 211924383 211924384 - G LPGAT1 Frame_Shift_Ins p.L294Pfs*4 0.15 TCGA-BR-4256-01 1 214706203 214706203 T C PTPN14 Intron 0.21 TCGA-BR-4256-01 1 22150185 22150185 G A HSPG2 Silent p.V4309V 0.20 TCGA-BR-4256-01 1 22178102 22178102 G A HSPG2 Silent p.P2365P 0.13 TCGA-BR-4256-01 1 224563565 224563565 G A CNIH4 3'UTR 0.13 TCGA-BR-4256-01 1 224804897 224804897 G A CNIH3 Silent p.A7A 0.16 TCGA-BR-4256-01 1 225591108 225591108 T C LBR Missense_Mutation p.H582R 0.20 deleterious(0) probably_damaging(1) TCGA-BR-4256-01 1 226353563 226353563 C A ACBD3 Missense_Mutation p.R142M 0.16 deleterious(0) possibly_damaging(0.803) TCGA-BR-4256-01 1 227216844 227216845 - A CDC42BPA Frame_Shift_Ins p.P1281Sfs*19 0.12 TCGA-BR-4256-01 1 228210569 228210569 C T WNT3A Silent p.V91V 0.15 TCGA-BR-4256-01 1 228493068 228493068 G A OBSCN Silent p.S4837S 0.12 TCGA-BR-4256-01 1 22913053 22913053 C T EPHA8 Missense_Mutation p.P302S 0.26 tolerated(0.09) benign(0) TCGA-BR-4256-01 1 22965815 22965815 A - C1QA Frame_Shift_Del p.D220Tfs*62 0.20 TCGA-BR-4256-01 1 231060632 231060632 A G TTC13 Missense_Mutation p.L559S 0.10 tolerated(0.22) benign(0.103) TCGA-BR-4256-01 1 23191603 23191603 C A EPHB2 Missense_Mutation p.H401N 0.22 deleterious(0.05) possibly_damaging(0.905) TCGA-BR-4256-01 1 235345419 235345419 T - ARID4B Frame_Shift_Del p.T939Rfs*2 0.21 TCGA-BR-4256-01 1 236389790 236389790 T C ERO1LB Silent p.G277G 0.23 TCGA-BR-4256-01 1 236760194 236760194 A G HEATR1 Missense_Mutation p.V229A 0.14 tolerated(0.7) benign(0.009) TCGA-BR-4256-01 1 237777405 237777405 G A RYR2 Silent p.R1659R 0.16 TCGA-BR-4256-01 1 240977013 240977013 C A RGS7 Silent p.T287T 0.19 TCGA-BR-4256-01 1 242253084 242253085 - T PLD5 3'UTR 0.16 TCGA-BR-4256-01 1 24447502 24447502 G A IL22RA1 Silent p.G506G 0.15 TCGA-BR-4256-01 1 248004443 248004443 G A OR11L1 Silent p.Y252Y 0.16 TCGA-BR-4256-01 1 2494319 2494319 T C TNFRSF14 Missense_Mutation p.V237A 0.10 tolerated(1) benign(0.001) TCGA-BR-4256-01 1 26230136 26230136 C T STMN1 Missense_Mutation p.R61H 0.15 deleterious(0.03) benign(0.042) TCGA-BR-4256-01 1 26303254 26303254 T C PAFAH2 Missense_Mutation p.D226G 0.18 deleterious(0) probably_damaging(0.917) TCGA-BR-4256-01 1 27105931 27105931 G - ARID1A Frame_Shift_Del p.D1850Tfs*33 0.25 TCGA-BR-4256-01 1 27224070 27224070 G A GPATCH3 Missense_Mutation p.R200W 0.13 deleterious(0) possibly_damaging(0.582) TCGA-BR-4256-01 1 27480472 27480472 A G SLC9A1 Splice_Site p.X118_splice 0.15 TCGA-BR-4256-01 1 28176658 28176658 C T PPP1R8 Missense_Mutation p.R253C 0.19 deleterious(0.02) possibly_damaging(0.586) TCGA-BR-4256-01 1 31811807 31811807 A - ZCCHC17 Frame_Shift_Del p.N78Mfs*4 0.12 TCGA-BR-4256-01 1 32092444 32092444 G T HCRTR1 Missense_Mutation p.G381C 0.21 deleterious(0.05) possibly_damaging(0.864) TCGA-BR-4256-01 1 32829237 32829237 C T TSSK3 Missense_Mutation p.R63C 0.21 deleterious(0.05) benign(0.243) TCGA-BR-4256-01 1 33836036 33836036 G A PHC2 Silent p.L188L 0.15 TCGA-BR-4256-01 1 35496158 35496158 T C ZMYM6 Missense_Mutation p.D28G 0.17 deleterious(0) probably_damaging(0.998) TCGA-BR-4256-01 1 36638990 36638990 G A MAP7D1 Missense_Mutation p.R217Q 0.13 probably_damaging(0.98) TCGA-BR-4256-01 1 38281018 38281018 G A MTF1 Silent p.P684P 0.19 TCGA-BR-4256-01 1 43317311 43317311 G A ZNF691 Missense_Mutation p.E259K 0.14 deleterious(0.05) probably_damaging(0.97) TCGA-BR-4256-01 1 44435850 44435850 G T DPH2 Translation_Start_Site p.M1? 0.12 deleterious(0.03) benign(0.416) TCGA-BR-4256-01 1 45267574 45267574 C T PLK3 Missense_Mutation p.A208V 0.10 deleterious(0.01) possibly_damaging(0.639) TCGA-BR-4256-01 1 45474833 45474833 C T HECTD3 Missense_Mutation p.R352H 0.14 deleterious(0.01) benign(0.329) TCGA-BR-4256-01 1 46521525 46521525 T - PIK3R3 Frame_Shift_Del p.M295* 0.14 TCGA-BR-4256-01 1 46871336 46871336 G - FAAH Frame_Shift_Del p.G220Vfs*15 0.15 TCGA-BR-4256-01 1 47351211 47351211 G A CYP4Z2P RNA 0.10 TCGA-BR-4256-01 1 52891135 52891135 C T ZCCHC11 Missense_Mutation p.A1586T 0.17 tolerated_low_confidence(0.1) possibly_damaging(0.533) TCGA-BR-4256-01 1 53980295 53980295 T C GLIS1 Intron 0.14 TCGA-BR-4256-01 1 55282678 55282678 G A C1orf177 Missense_Mutation p.G356D 0.16 deleterious(0) probably_damaging(1) TCGA-BR-4256-01 1 57340695 57340695 C T C8A Missense_Mutation p.A82V 0.23 tolerated(0.36) benign(0.005) TCGA-BR-4256-01 1 5940242 5940242 C T NPHP4 Missense_Mutation p.R848Q 0.18 tolerated(0.09) probably_damaging(0.987) TCGA-BR-4256-01 1 60381679 60381679 T C CYP2J2 Missense_Mutation p.I102V 0.15 tolerated(1) benign(0.002) TCGA-BR-4256-01 1 65874367 65874367 T C DNAJC6 Silent p.G845G 0.22 TCGA-BR-4256-01 1 6649095 6649095 G A ZBTB48 Silent p.P630P 0.15 TCGA-BR-4256-01 1 6659418 6659418 G A KLHL21 Silent p.R372R 0.19 TCGA-BR-4256-01 1 68603558 68603558 A - WLS Frame_Shift_Del p.F472Sfs*15 0.15 TCGA-BR-4256-01 1 70504797 70504797 T C LRRC7 Missense_Mutation p.V1059A 0.13 tolerated(0.17) benign(0) TCGA-BR-4256-01 1 75097397 75097397 C T C1orf173 Silent p.K273K 0.08 TCGA-BR-4256-01 1 78478866 78478866 C T DNAJB4 Nonsense_Mutation p.R115* 0.13 TCGA-BR-4256-01 1 94578618 94578618 C T ABCA4 Missense_Mutation p.R24H 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-BR-4256-01 1 99771300 99771300 C T LPPR4 Silent p.D342D 0.15 TCGA-BR-4256-01 20 13273089 13273089 G A ISM1 Missense_Mutation p.A286T 0.19 tolerated(0.2) possibly_damaging(0.89) TCGA-BR-4256-01 20 13971151 13971151 T C SEL1L2 Missense_Mutation p.I10M 0.12 tolerated_low_confidence(0.12) probably_damaging(0.924) TCGA-BR-4256-01 20 13976403 13976403 C T MACROD2 5'UTR 0.14 TCGA-BR-4256-01 20 17434530 17434530 C T PCSK2 Silent p.Y343Y 0.14 TCGA-BR-4256-01 20 17462302 17462302 C T PCSK2 Missense_Mutation p.R502C 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-BR-4256-01 20 17937586 17937586 C T SNX5 Silent p.V49V 0.10 TCGA-BR-4256-01 20 17956339 17956339 A G MGME1 Missense_Mutation p.Q175R 0.20 tolerated(0.13) benign(0.179) TCGA-BR-4256-01 20 18529376 18529376 C T SEC23B Missense_Mutation p.P623S 0.10 deleterious(0) probably_damaging(1) TCGA-BR-4256-01 20 20493316 20493316 C T RALGAPA2 Missense_Mutation p.R1566H 0.17 tolerated(0.39) benign(0.001) TCGA-BR-4256-01 20 21494333 21494333 G A NKX2-2 5'UTR 0.16 TCGA-BR-4256-01 20 23065887 23065887 C - CD93 Frame_Shift_Del p.A315Pfs*273 0.27 TCGA-BR-4256-01 20 23965921 23965921 C T GGTLC1 Missense_Mutation p.V204I 0.15 tolerated(0.1) benign(0.15) TCGA-BR-4256-01 20 2593878 2593878 G A TMC2 Silent p.T594T 0.13 TCGA-BR-4256-01 20 30659469 30659469 G A HCK Missense_Mutation p.G23R 0.11 deleterious_low_confidence(0) probably_damaging(1) TCGA-BR-4256-01 20 31984872 31984872 G T CDK5RAP1 5'UTR 0.17 TCGA-BR-4256-01 20 36640099 36640099 C T TTI1 Missense_Mutation p.R707H 0.11 deleterious(0.04) benign(0.316) TCGA-BR-4256-01 20 37182676 37182676 T - RALGAPB Frame_Shift_Del p.L1112Sfs*9 0.14 TCGA-BR-4256-01 20 39986566 39986566 T C LPIN3 Missense_Mutation p.M695T 0.17 deleterious(0) probably_damaging(0.994) TCGA-BR-4256-01 20 40033290 40033290 T C CHD6 Silent p.E2697E 0.12 TCGA-BR-4256-01 20 40727077 40727077 T A PTPRT Missense_Mutation p.E1277V 0.12 deleterious(0) probably_damaging(0.998) TCGA-BR-4256-01 20 40735471 40735471 G A PTPRT Silent p.C1115C 0.10 TCGA-BR-4256-01 20 43138579 43138579 G A SERINC3 Missense_Mutation p.S189L 0.10 tolerated(0.24) benign(0.031) TCGA-BR-4256-01 20 43248966 43248966 T C ADA Missense_Mutation p.Y351C 0.19 deleterious(0) probably_damaging(1) TCGA-BR-4256-01 20 44238847 44238847 A C WFDC9 5'UTR 0.16 TCGA-BR-4256-01 20 47266542 47266542 G A PREX1 Missense_Mutation p.P1007L 0.09 deleterious(0.01) benign(0.009) TCGA-BR-4256-01 20 47879934 47879934 T C ZNFX1 Silent p.E746E 0.26 TCGA-BR-4256-01 20 48600381 48600381 T A SNAI1 Missense_Mutation p.Y35N 0.16 tolerated(0.16) possibly_damaging(0.883) TCGA-BR-4256-01 20 49219090 49219090 C T FAM65C Missense_Mutation p.R389Q 0.16 tolerated(1) benign(0.001) TCGA-BR-4256-01 20 50133334 50133334 G A NFATC2 Missense_Mutation p.P441S 0.11 deleterious(0) probably_damaging(0.994) TCGA-BR-4256-01 20 55953093 55953093 A - RAE1 Frame_Shift_Del p.N351Ifs*12 0.17 TCGA-BR-4256-01 20 57392726 57392726 G - MIR296 RNA 0.22 TCGA-BR-4256-01 20 58567530 58567530 G A CDH26 Missense_Mutation p.V461I 0.09 deleterious(0.01) probably_damaging(0.957) TCGA-BR-4256-01 20 60448951 60448951 C T CDH4 Nonsense_Mutation p.R349* 0.14 TCGA-BR-4256-01 20 60888776 60888776 C T LAMA5 Missense_Mutation p.A2863T 0.11 benign(0.123) TCGA-BR-4256-01 20 62595544 62595544 G A ZNF512B Nonsense_Mutation p.R454* 0.20 TCGA-BR-4256-01 21 15561475 15561475 T G LIPI Missense_Mutation p.E125D 0.21 tolerated(0.23) benign(0.065) TCGA-BR-4256-01 21 16339438 16339438 T - NRIP1 Frame_Shift_Del p.N359Mfs*13 0.15 TCGA-BR-4256-01 21 19770545 19770545 T C TMPRSS15 Missense_Mutation p.K83E 0.16 deleterious(0) probably_damaging(1) TCGA-BR-4256-01 21 30329691 30329691 C T LTN1 Missense_Mutation p.S998N 0.08 tolerated(0.08) benign(0.156) TCGA-BR-4256-01 21 31538770 31538770 G A CLDN17 Nonsense_Mutation p.R56* 0.14 TCGA-BR-4256-01 21 31852407 31852407 C T KRTAP19-1 Missense_Mutation p.R77H 0.14 tolerated_low_confidence(0.37) unknown(0) TCGA-BR-4256-01 21 33887601 33887601 C T EVA1C 3'UTR 0.20 TCGA-BR-4256-01 21 34809262 34809262 C T IFNGR2 Missense_Mutation p.T336M 0.18 deleterious(0) possibly_damaging(0.68) TCGA-BR-4256-01 21 36171728 36171728 C T RUNX1 Nonsense_Mutation p.W279* 0.15 TCGA-BR-4256-01 21 37763965 37763965 C T CHAF1B Missense_Mutation p.R126W 0.17 deleterious(0) probably_damaging(1) TCGA-BR-4256-01 21 42694964 42694964 G A FAM3B Missense_Mutation p.R45H 0.17 tolerated(0.12) benign(0.008) TCGA-BR-4256-01 21 43411221 43411221 T C ZBTB21 Missense_Mutation p.K995R 0.10 deleterious(0.03) probably_damaging(0.913) TCGA-BR-4256-01 21 43504209 43504209 G T UMODL1 Missense_Mutation p.G112V 0.16 tolerated(0.07) benign(0.004) TCGA-BR-4256-01 21 45994866 45994866 T C KRTAP10-4 3'UTR 0.12 TCGA-BR-4256-01 21 46326963 46326963 C T ITGB2 Silent p.R65R 0.14 TCGA-BR-4256-01 21 46888205 46888205 G A COL18A1 Silent p.P232P 0.28 TCGA-BR-4256-01 22 17073106 17073106 G A CCT8L2 Missense_Mutation p.T112M 0.12 deleterious(0) possibly_damaging(0.777) TCGA-BR-4256-01 22 19119321 19119321 C T TSSK2 Missense_Mutation p.L137F 0.13 deleterious(0) probably_damaging(0.998) TCGA-BR-4256-01 22 20100231 20100231 G - TRMT2A Frame_Shift_Del p.P578Rfs*59 0.18 TCGA-BR-4256-01 22 24135750 24135750 C T SMARCB1 Silent p.H79H 0.15 TCGA-BR-4256-01 22 24145518 24145518 C T SMARCB1 Silent p.N179N 0.10 TCGA-BR-4256-01 22 24487708 24487708 G A CABIN1 Missense_Mutation p.A1233T 0.18 deleterious(0) possibly_damaging(0.836) TCGA-BR-4256-01 22 25151789 25151789 C T PIWIL3 Silent p.S218S 0.16 TCGA-BR-4256-01 22 26776238 26776239 AG - SEZ6L Frame_Shift_Del p.E1019Vfs*2 0.15 TCGA-BR-4256-01 22 28193441 28193441 C T MN1 Missense_Mutation p.G1031R 0.34 possibly_damaging(0.468) TCGA-BR-4256-01 22 29835329 29835329 A - RFPL1 Intron 0.33 TCGA-BR-4256-01 22 30418067 30418067 G A MTMR3 Missense_Mutation p.R1092H 0.14 tolerated(0.25) benign(0.005) TCGA-BR-4256-01 22 30951340 30951340 C T GAL3ST1 Missense_Mutation p.G291E 0.13 tolerated(0.36) possibly_damaging(0.826) TCGA-BR-4256-01 22 31495882 31495882 A G SMTN Missense_Mutation p.E868G 0.08 deleterious(0) probably_damaging(1) TCGA-BR-4256-01 22 37499436 37499436 G - TMPRSS6 Frame_Shift_Del p.Q17Rfs*60 0.15 TCGA-BR-4256-01 22 37578581 37578581 T C C1QTNF6 Missense_Mutation p.T162A 0.15 tolerated(1) benign(0.012) TCGA-BR-4256-01 22 37769859 37769859 G A ELFN2 Silent p.P572P 0.24 TCGA-BR-4256-01 22 38211178 38211178 G A GCAT Missense_Mutation p.D234N 0.21 deleterious(0) probably_damaging(0.999) TCGA-BR-4256-01 22 40036980 40036980 C - CACNA1I Frame_Shift_Del p.P285Rfs*69 0.14 TCGA-BR-4256-01 22 41076969 41076969 G A MCHR1 Silent p.T102T 0.21 TCGA-BR-4256-01 22 41527639 41527639 T C EP300 Splice_Site p.X510_splice 0.10 TCGA-BR-4256-01 22 42276824 42276824 C T SREBF2 Silent p.N622N 0.24 TCGA-BR-4256-01 22 44645526 44645526 A T KIAA1644 3'UTR 0.13 TCGA-BR-4256-01 22 50301525 50301525 A G ALG12 Missense_Mutation p.I279T 0.19 benign(0.201) TCGA-BR-4256-01 22 51015369 51015369 G C CPT1B Missense_Mutation p.Q126E 0.17 deleterious(0.03) benign(0.011) TCGA-BR-4256-01 2 101624428 101624428 A G TBC1D8 Missense_Mutation p.L1093P 0.10 deleterious(0) probably_damaging(0.999) TCGA-BR-4256-01 2 105706434 105706434 A - MRPS9 Frame_Shift_Del p.K212Nfs*5 0.17 TCGA-BR-4256-01 2 109088197 109088197 T C GCC2 Silent p.R804R 0.18 TCGA-BR-4256-01 2 109111808 109111808 G A GCC2 Silent p.P1503P 0.10 TCGA-BR-4256-01 2 109380502 109380502 T C RANBP2 Silent p.G1169G 0.17 TCGA-BR-4256-01 2 118764370 118764370 C T CCDC93 Missense_Mutation p.C60Y 0.11 deleterious(0) probably_damaging(0.999) TCGA-BR-4256-01 2 122494356 122494356 T - NIFK Frame_Shift_Del p.K24Rfs*10 0.26 TCGA-BR-4256-01 2 136481597 136481597 G A R3HDM1 Missense_Mutation p.G1012D 0.08 deleterious(0.03) probably_damaging(1) TCGA-BR-4256-01 2 136566593 136566593 G A LCT Silent p.Y1108Y 0.08 TCGA-BR-4256-01 2 136614442 136614442 G A MCM6 Silent p.N494N 0.18 TCGA-BR-4256-01 2 141130589 141130589 T G LRP1B Missense_Mutation p.S3586R 0.15 benign(0.001) TCGA-BR-4256-01 2 141272329 141272329 G T LRP1B Missense_Mutation p.S2721Y 0.16 possibly_damaging(0.86) TCGA-BR-4256-01 2 149247765 149247765 C T MBD5 Missense_Mutation p.H1289Y 0.12 deleterious_low_confidence(0) unknown(0) TCGA-BR-4256-01 2 152319553 152319553 A - RIF1 Frame_Shift_Del p.A1176Lfs*2 0.12 TCGA-BR-4256-01 2 152320331 152320331 G T RIF1 Missense_Mutation p.D1433Y 0.15 deleterious(0) probably_damaging(0.966) TCGA-BR-4256-01 2 153471416 153471416 C A FMNL2 Missense_Mutation p.L372M 0.15 possibly_damaging(0.655) TCGA-BR-4256-01 2 154334842 154334842 G A RPRM Silent p.L80L 0.14 TCGA-BR-4256-01 2 155252628 155252628 T C GALNT13 Missense_Mutation p.Y428H 0.16 tolerated(0.33) benign(0.001) TCGA-BR-4256-01 2 159922470 159922470 C T TANC1 Silent p.G16G 0.11 TCGA-BR-4256-01 2 166747442 166747442 C T TTC21B Missense_Mutation p.E1003K 0.14 deleterious(0.04) benign(0.032) TCGA-BR-4256-01 2 167133718 167133718 G A SCN9A Silent p.V872V 0.12 TCGA-BR-4256-01 2 170127462 170127462 A - LRP2 Frame_Shift_Del p.S758Qfs*7 0.11 TCGA-BR-4256-01 2 170493971 170493972 - A PPIG Frame_Shift_Ins p.N737Kfs*2 0.11 TCGA-BR-4256-01 2 175618367 175618367 G A CHRNA1 Silent p.P239P 0.13 TCGA-BR-4256-01 2 17922967 17922967 A G SMC6 Silent p.S50S 0.10 TCGA-BR-4256-01 2 179247806 179247806 G A OSBPL6 Silent p.L584L 0.10 TCGA-BR-4256-01 2 179645895 179645895 C T TTN Missense_Mutation p.R1159H 0.18 TCGA-BR-4256-01 2 17998310 17998310 C T MSGN1 Silent p.I175I 0.14 TCGA-BR-4256-01 2 182344950 182344950 T - ITGA4 Frame_Shift_Del p.L239* 0.16 TCGA-BR-4256-01 2 185803770 185803770 A - ZNF804A 3'UTR 0.11 TCGA-BR-4256-01 2 18764262 18764262 G A NT5C1B Missense_Mutation p.A358V 0.16 deleterious(0.01) benign(0.423) TCGA-BR-4256-01 2 190320086 190320086 A G WDR75 Silent p.S138S 0.17 TCGA-BR-4256-01 2 190329974 190329974 C T WDR75 Missense_Mutation p.T428I 0.10 deleterious(0.03) benign(0.016) TCGA-BR-4256-01 2 191524622 191524622 T C NAB1 Silent p.D240D 0.16 TCGA-BR-4256-01 2 198262811 198262811 C A SF3B1 Missense_Mutation p.W1055L 0.13 deleterious(0) probably_damaging(0.994) TCGA-BR-4256-01 2 201681849 201681849 T G BZW1 Silent p.G173G 0.22 TCGA-BR-4256-01 2 202122920 202122920 T C CASP8 5'UTR 0.14 TCGA-BR-4256-01 2 202123107 202123107 T C CASP8 Splice_Site p.X51_splice 0.12 TCGA-BR-4256-01 2 202139625 202139626 - G CASP8 Frame_Shift_Ins p.V264Gfs*13 0.12 TCGA-BR-4256-01 2 203745590 203745590 C T WDR12 Missense_Mutation p.G422E 0.15 deleterious_low_confidence(0) benign(0.142) TCGA-BR-4256-01 2 20403769 20403769 C A SDC1 Silent p.T144T 0.08 TCGA-BR-4256-01 2 209198113 209198113 T C PIKFYVE Silent p.Y1346Y 0.11 TCGA-BR-4256-01 2 210560646 210560646 G A MAP2 Missense_Mutation p.R1251H 0.17 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-BR-4256-01 2 210658554 210658554 T G UNC80 Silent p.T303T 0.11 TCGA-BR-4256-01 2 212251610 212251610 T C ERBB4 Missense_Mutation p.Y1150C 0.17 deleterious(0) probably_damaging(0.959) TCGA-BR-4256-01 2 213403254 213403254 T - ERBB4 Frame_Shift_Del p.M1? 0.24 TCGA-BR-4256-01 2 215823125 215823125 G A ABCA12 Missense_Mutation p.S1998F 0.13 deleterious(0) probably_damaging(1) TCGA-BR-4256-01 2 216236932 216236932 C A FN1 Silent p.G2138G 0.13 TCGA-BR-4256-01 2 216249629 216249629 A G FN1 Silent p.A1561A 0.13 TCGA-BR-4256-01 2 216960851 216960851 C T TMEM169 Silent p.Y55Y 0.12 TCGA-BR-4256-01 2 216992311 216992311 T A XRCC5 Missense_Mutation p.L284Q 0.10 tolerated(0.52) benign(0.01) TCGA-BR-4256-01 2 219941148 219941148 C T NHEJ1 Silent p.Q285Q 0.13 TCGA-BR-4256-01 2 220414482 220414482 T C TMEM198 Missense_Mutation p.L330P 0.19 tolerated(0.08) possibly_damaging(0.766) TCGA-BR-4256-01 2 223066632 223066632 G A PAX3 Intron 0.12 TCGA-BR-4256-01 2 223086050 223086050 C T PAX3 Silent p.L283L 0.11 TCGA-BR-4256-01 2 227661341 227661341 C - IRS1 Frame_Shift_Del p.G705Afs*29 0.22 TCGA-BR-4256-01 2 232156155 232156155 C T ARMC9 Silent p.S572S 0.13 TCGA-BR-4256-01 2 233633479 233633479 A - KCNJ13 Frame_Shift_Del p.S169Qfs*9 0.14 TCGA-BR-4256-01 2 236817445 236817445 G A AGAP1 Missense_Mutation p.G407R 0.09 deleterious(0) possibly_damaging(0.874) TCGA-BR-4256-01 2 238262045 238262045 C T COL6A3 Missense_Mutation p.G2210D 0.14 benign(0.234) TCGA-BR-4256-01 2 238668757 238668757 C T LRRFIP1 Silent p.S266S 0.14 TCGA-BR-4256-01 2 239161805 239161805 G T PER2 Silent p.T953T 0.17 TCGA-BR-4256-01 2 239162026 239162026 C T PER2 Missense_Mutation p.A880T 0.21 tolerated(0.55) benign(0.002) TCGA-BR-4256-01 2 24260710 24260710 T C C2orf44 Missense_Mutation p.K552R 0.15 tolerated(0.28) possibly_damaging(0.904) TCGA-BR-4256-01 2 27805111 27805111 T C C2orf16 Missense_Mutation p.M1891T 0.13 tolerated_low_confidence(0.3) unknown(0) TCGA-BR-4256-01 2 37041497 37041497 G T VIT Missense_Mutation p.R692L 0.07 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-BR-4256-01 2 37376193 37376193 A - EIF2AK2 Intron 0.21 TCGA-BR-4256-01 2 40657163 40657163 G A SLC8A1 Silent p.V86V 0.11 TCGA-BR-4256-01 2 43958705 43958705 C T PLEKHH2 Silent p.S969S 0.16 TCGA-BR-4256-01 2 45169750 45169750 G A SIX3 Nonsense_Mutation p.W169* 0.31 TCGA-BR-4256-01 2 64863063 64863063 A C SERTAD2 Nonstop_Mutation p.*315Eext*45 0.22 TCGA-BR-4256-01 2 71635329 71635329 T C ZNF638 Silent p.G1071G 0.09 TCGA-BR-4256-01 2 73868171 73868171 C G NAT8 Missense_Mutation p.K195N 0.21 deleterious(0.02) benign(0.119) TCGA-BR-4256-01 2 74177850 74177850 T C DGUOK Silent p.A194A 0.15 TCGA-BR-4256-01 2 74327752 74327752 C T TET3 Silent p.Y1144Y 0.13 TCGA-BR-4256-01 2 74386330 74386330 C T MOB1A Missense_Mutation p.R154H 0.15 deleterious(0) possibly_damaging(0.848) TCGA-BR-4256-01 2 85628441 85628441 C T CAPG Silent p.V121V 0.13 TCGA-BR-4256-01 2 85780609 85780611 AGG - GGCX In_Frame_Del p.S300del 0.18 TCGA-BR-4256-01 2 85829045 85829045 G A TMEM150A Silent p.V9V 0.19 TCGA-BR-4256-01 2 85890528 85890528 G A SFTPB Nonsense_Mutation p.Q327* 0.23 TCGA-BR-4256-01 2 86305040 86305040 G A POLR1A Missense_Mutation p.A441V 0.09 deleterious(0) probably_damaging(0.994) TCGA-BR-4256-01 2 86756342 86756342 G T RNF103-CHMP3 Silent p.L124L 0.11 TCGA-BR-4256-01 2 95818899 95818899 A C ZNF514 Missense_Mutation p.F34V 0.11 deleterious(0) benign(0.166) TCGA-BR-4256-01 2 95947910 95947910 C T PROM2 Missense_Mutation p.A555V 0.25 tolerated(0.16) benign(0.098) TCGA-BR-4256-01 2 96956091 96956091 G A SNRNP200 Silent p.I905I 0.13 TCGA-BR-4256-01 2 97164021 97164021 G A NEURL3 RNA 0.30 TCGA-BR-4256-01 2 97368919 97368919 C - LMAN2L 3'Flank 0.10 TCGA-BR-4256-01 2 98351166 98351166 G A ZAP70 Missense_Mutation p.R358H 0.23 deleterious(0.01) possibly_damaging(0.783) TCGA-BR-4256-01 2 98475775 98475776 - A TMEM131 Frame_Shift_Ins p.Q159Sfs*3 0.15 TCGA-BR-4256-01 3 10312539 10312539 G - TATDN2 Frame_Shift_Del p.A560Pfs*24 0.16 TCGA-BR-4256-01 3 108183492 108183492 G A MYH15 Missense_Mutation p.A595V 0.12 deleterious(0) probably_damaging(0.967) TCGA-BR-4256-01 3 11064133 11064133 G T SLC6A1 Missense_Mutation p.K231N 0.15 deleterious(0.02) probably_damaging(1) TCGA-BR-4256-01 3 113092397 113092397 A G WDR52 Missense_Mutation p.Y769H 0.12 deleterious(0) probably_damaging(0.938) TCGA-BR-4256-01 3 113285337 113285337 G A SIDT1 Missense_Mutation p.R98H 0.18 deleterious(0) probably_damaging(0.999) TCGA-BR-4256-01 3 113697052 113697052 C T KIAA1407 Missense_Mutation p.A863T 0.16 deleterious(0) possibly_damaging(0.901) TCGA-BR-4256-01 3 114058003 114058003 G - ZBTB20 Frame_Shift_Del p.P692Lfs*43 0.12 TCGA-BR-4256-01 3 11851058 11851059 - T TAMM41 Frame_Shift_Ins p.N269Kfs*14 0.14 TCGA-BR-4256-01 3 11885643 11885643 C T TAMM41 Missense_Mutation p.A60T 0.17 tolerated(1) benign(0.009) TCGA-BR-4256-01 3 121132132 121132132 C T STXBP5L Missense_Mutation p.R1050W 0.08 deleterious(0) probably_damaging(1) TCGA-BR-4256-01 3 121825268 121825268 T C CD86 Silent p.P208P 0.14 TCGA-BR-4256-01 3 122419268 122419270 AAG - PARP14 In_Frame_Del p.K624del 0.23 TCGA-BR-4256-01 3 124951370 124951370 G A ZNF148 Missense_Mutation p.R734C 0.19 deleterious(0.01) possibly_damaging(0.869) TCGA-BR-4256-01 3 127454581 127454582 - C MGLL Intron 0.09 TCGA-BR-4256-01 3 127454620 127454620 G A MGLL Intron 0.10 TCGA-BR-4256-01 3 128621403 128621403 T C ACAD9 Missense_Mutation p.M297T 0.21 deleterious(0) possibly_damaging(0.864) TCGA-BR-4256-01 3 12875478 12875478 C T CAND2 Silent p.S1236S 0.20 TCGA-BR-4256-01 3 132403635 132403635 T C NPHP3 Silent p.T1111T 0.13 TCGA-BR-4256-01 3 134278244 134278244 G A CEP63 Missense_Mutation p.M642I 0.14 tolerated(0.44) benign(0) TCGA-BR-4256-01 3 141161920 141161920 A C ZBTB38 Missense_Mutation p.E230D 0.12 tolerated(0.48) benign(0.007) TCGA-BR-4256-01 3 142769829 142769829 A - U2SURP Frame_Shift_Del p.K866Nfs*10 0.15 TCGA-BR-4256-01 3 14711585 14711585 G A CCDC174 Missense_Mutation p.R366H 0.16 deleterious(0) possibly_damaging(0.84) TCGA-BR-4256-01 3 150416589 150416589 T C FAM194A Missense_Mutation p.K181R 0.13 tolerated(0.34) benign(0.009) TCGA-BR-4256-01 3 151017926 151017926 C A GPR87 5'UTR 0.14 TCGA-BR-4256-01 3 154010357 154010358 TC - DHX36 Frame_Shift_Del p.R599Kfs*17 0.10 TCGA-BR-4256-01 3 15749455 15749455 G A ANKRD28 Missense_Mutation p.A478V 0.15 deleterious(0) probably_damaging(0.996) TCGA-BR-4256-01 3 157920896 157920896 G A RSRC1 Missense_Mutation p.R119H 0.11 deleterious_low_confidence(0.01) unknown(0) TCGA-BR-4256-01 3 167750557 167750557 A G GOLIM4 Silent p.H309H 0.13 TCGA-BR-4256-01 3 169557805 169557805 T - LRRC31 Frame_Shift_Del p.R542Efs*37 0.15 TCGA-BR-4256-01 3 174814591 174814591 G A NAALADL2 Missense_Mutation p.A19T 0.24 deleterious(0.04) benign(0.388) TCGA-BR-4256-01 3 176756101 176756101 C T TBL1XR1 Silent p.T349T 0.13 TCGA-BR-4256-01 3 183859721 183859721 G A EIF2B5 Missense_Mutation p.V389M 0.12 deleterious(0) probably_damaging(0.978) TCGA-BR-4256-01 3 184909973 184909973 T C EHHADH 3'UTR 0.08 TCGA-BR-4256-01 3 186572260 186572260 A G ADIPOQ Missense_Mutation p.M168V 0.13 tolerated(0.4) benign(0.011) TCGA-BR-4256-01 3 188327061 188327061 A G LPP Missense_Mutation p.K181R 0.15 tolerated(0.2) probably_damaging(0.995) TCGA-BR-4256-01 3 190366420 190366420 C T IL1RAP Intron 0.13 TCGA-BR-4256-01 3 193160315 193160315 G A ATP13A4 Missense_Mutation p.A728V 0.11 deleterious(0) probably_damaging(0.999) TCGA-BR-4256-01 3 19492689 19492689 A G KCNH8 Missense_Mutation p.M540V 0.13 deleterious(0) benign(0.144) TCGA-BR-4256-01 3 19492702 19492704 AGG - KCNH8 In_Frame_Del p.E545del 0.12 TCGA-BR-4256-01 3 195803989 195803989 A C TFRC 5'UTR 0.08 TCGA-BR-4256-01 3 196554107 196554107 A G PAK2 Missense_Mutation p.Q464R 0.12 deleterious(0.03) benign(0.061) TCGA-BR-4256-01 3 24004097 24004097 G A NR1D2 Splice_Site p.X382_splice 0.06 TCGA-BR-4256-01 3 27761703 27761703 C - EOMES Frame_Shift_Del p.G332Afs*4 0.22 TCGA-BR-4256-01 3 27764052 27764052 C G EOMES 5'Flank 0.36 TCGA-BR-4256-01 3 37368531 37368531 T C GOLGA4 Silent p.Y1740Y 0.16 TCGA-BR-4256-01 3 38438615 38438615 C T XYLB Missense_Mutation p.S468L 0.16 deleterious(0) probably_damaging(0.909) TCGA-BR-4256-01 3 39177852 39177852 T - TTC21A Frame_Shift_Del p.L992Wfs*6 0.11 TCGA-BR-4256-01 3 44943299 44943299 G T TGM4 Missense_Mutation p.G283C 0.12 deleterious(0) probably_damaging(1) TCGA-BR-4256-01 3 45435972 45435972 T - LARS2 Frame_Shift_Del p.Y11Mfs*5 0.20 TCGA-BR-4256-01 3 45637492 45637492 G A LIMD1 Missense_Mutation p.C374Y 0.18 tolerated(0.1) benign(0.01) TCGA-BR-4256-01 3 46306704 46306704 G A CCR3 Missense_Mutation p.D40N 0.15 tolerated(0.18) benign(0.019) TCGA-BR-4256-01 3 48699642 48699642 G A CELSR3 Silent p.C142C 0.15 TCGA-BR-4256-01 3 49139862 49139862 T C QARS Missense_Mutation p.K187R 0.14 tolerated(0.06) benign(0.14) TCGA-BR-4256-01 3 49200881 49200881 T C CCDC71 Missense_Mutation p.H254R 0.13 tolerated(0.84) benign(0.429) TCGA-BR-4256-01 3 49688509 49688509 G A BSN Silent p.A661A 0.10 TCGA-BR-4256-01 3 49694676 49694676 C T BSN Missense_Mutation p.R2563W 0.15 unknown(0) TCGA-BR-4256-01 3 49947986 49947986 C T MON1A Silent p.A412A 0.29 TCGA-BR-4256-01 3 51417604 51417604 C - DOCK3 Frame_Shift_Del p.P1852Qfs*45 0.39 TCGA-BR-4256-01 3 52521801 52521801 C T NISCH Missense_Mutation p.H765Y 0.14 tolerated(1) benign(0.018) TCGA-BR-4256-01 3 52559266 52559266 G A NT5DC2 Missense_Mutation p.R389C 0.15 deleterious(0) probably_damaging(0.939) TCGA-BR-4256-01 3 52595943 52595943 G T PBRM1 Silent p.G1324G 0.20 TCGA-BR-4256-01 3 53899191 53899191 C T IL17RB Silent p.D455D 0.14 TCGA-BR-4256-01 3 54952709 54952709 T A LRTM1 Missense_Mutation p.E272V 0.11 deleterious(0) possibly_damaging(0.642) TCGA-BR-4256-01 3 58555555 58555555 G A FAM107A Silent p.D11D 0.16 TCGA-BR-4256-01 3 66467669 66467669 G A LRIG1 Silent p.S129S 0.17 TCGA-BR-4256-01 3 67053771 67053771 C T KBTBD8 Missense_Mutation p.A127V 0.14 deleterious(0.01) probably_damaging(0.998) TCGA-BR-4256-01 3 72971426 72971426 A G GXYLT2 Silent p.G180G 0.17 TCGA-BR-4256-01 3 74420384 74420384 C T CNTN3 Silent p.V207V 0.12 TCGA-BR-4256-01 3 77684125 77684125 A - ROBO2 Frame_Shift_Del p.K1306Nfs*20 0.13 TCGA-BR-4256-01 3 7782054 7782054 A - GRM7 Frame_Shift_Del p.K905Rfs*56 0.11 TCGA-BR-4256-01 3 87027811 87027811 G T VGLL3 Missense_Mutation p.L90I 0.16 deleterious(0.03) probably_damaging(0.981) TCGA-BR-4256-01 3 89499360 89499360 C T EPHA3 Missense_Mutation p.P844S 0.11 deleterious(0.01) probably_damaging(1) TCGA-BR-4256-01 3 9034632 9034632 G A SRGAP3 Missense_Mutation p.T839M 0.13 deleterious(0.01) benign(0.164) TCGA-BR-4256-01 3 9483295 9483295 A G SETD5 Missense_Mutation p.T277A 0.15 deleterious(0) probably_damaging(0.989) TCGA-BR-4256-01 3 97852456 97852456 A - OR5H1 Frame_Shift_Del p.K307Nfs*? 0.12 TCGA-BR-4256-01 4 100530094 100530094 G A MTTP Missense_Mutation p.A577T 0.15 tolerated(0.28) benign(0.022) TCGA-BR-4256-01 4 10446426 10446426 A C ZNF518B Silent p.A509A 0.13 TCGA-BR-4256-01 4 108870669 108870669 G A CYP2U1 Silent p.G484G 0.13 TCGA-BR-4256-01 4 110673647 110673647 A T CFI Missense_Mutation p.I306N 0.14 tolerated(0.28) benign(0.418) TCGA-BR-4256-01 4 111539779 111539779 G A PITX2 Silent p.C159C 0.07 TCGA-BR-4256-01 4 115597196 115597196 C A UGT8 Missense_Mutation p.L460I 0.11 deleterious(0) benign(0.172) TCGA-BR-4256-01 4 118005516 118005517 - T TRAM1L1 Frame_Shift_Ins p.R345Kfs*13 0.12 TCGA-BR-4256-01 4 120981393 120981393 T - MAD2L1 Frame_Shift_Del p.K166Nfs*28 0.19 TCGA-BR-4256-01 4 126328260 126328260 G A FAT4 Missense_Mutation p.V1845M 0.18 benign(0.1) TCGA-BR-4256-01 4 126411935 126411935 G T FAT4 Missense_Mutation p.R4653M 0.18 probably_damaging(0.995) TCGA-BR-4256-01 4 13604645 13604645 C A BOD1L1 Missense_Mutation p.R1293S 0.17 benign(0.021) TCGA-BR-4256-01 4 1373950 1373950 C T UVSSA Missense_Mutation p.P562S 0.30 deleterious(0) probably_damaging(1) TCGA-BR-4256-01 4 146807029 146807029 G A ZNF827 Silent p.G516G 0.14 TCGA-BR-4256-01 4 149002580 149002580 G A NR3C2 Missense_Mutation p.P957L 0.21 deleterious(0) probably_damaging(0.966) TCGA-BR-4256-01 4 15009022 15009022 C T CPEB2 Missense_Mutation p.R586C 0.14 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BR-4256-01 4 151114360 151114360 A G DCLK2 Missense_Mutation p.Y276C 0.14 deleterious(0) probably_damaging(0.997) TCGA-BR-4256-01 4 153247366 153247366 C T FBXW7 Missense_Mutation p.R479Q 0.15 deleterious(0.03) probably_damaging(1) TCGA-BR-4256-01 4 153691624 153691624 T - TIGD4 Frame_Shift_Del p.N178Mfs*5 0.14 TCGA-BR-4256-01 4 159630906 159630906 A G PPID Silent p.Y365Y 0.18 TCGA-BR-4256-01 4 162307355 162307355 A T FSTL5 Silent p.T696T 0.21 TCGA-BR-4256-01 4 169604153 169604154 - A PALLD Frame_Shift_Ins p.K389Efs*44 0.14 TCGA-BR-4256-01 4 170926737 170926737 C T MFAP3L Missense_Mutation p.G98R 0.14 tolerated(0.08) possibly_damaging(0.739) TCGA-BR-4256-01 4 171008379 171008379 C A AADAT Missense_Mutation p.W86L 0.13 deleterious(0.01) probably_damaging(0.976) TCGA-BR-4256-01 4 174254712 174254714 TTC - HMGB2 In_Frame_Del p.K30del 0.21 TCGA-BR-4256-01 4 17805438 17805438 T C DCAF16 Silent p.P109P 0.13 TCGA-BR-4256-01 4 186545449 186545449 G A SORBS2 Silent p.T474T 0.12 TCGA-BR-4256-01 4 187524858 187524858 C A FAT1 Missense_Mutation p.G3608W 0.16 probably_damaging(1) TCGA-BR-4256-01 4 188924151 188924151 G A ZFP42 Missense_Mutation p.G64R 0.14 tolerated(0.15) benign(0.015) TCGA-BR-4256-01 4 27010595 27010595 A C STIM2 Missense_Mutation p.D495A 0.10 deleterious(0.01) probably_damaging(0.996) TCGA-BR-4256-01 4 2831451 2831451 C - SH3BP2 Frame_Shift_Del p.R332Efs*3 0.24 TCGA-BR-4256-01 4 3224185 3224185 G A HTT Missense_Mutation p.V2481M 0.16 benign(0.026) TCGA-BR-4256-01 4 37848961 37848961 A G PGM2 Intron 0.13 TCGA-BR-4256-01 4 39254779 39254779 G C WDR19 Missense_Mutation p.V915L 0.15 tolerated(0.3) benign(0.012) TCGA-BR-4256-01 4 40827943 40827943 C T APBB2 Missense_Mutation p.V593M 0.14 deleterious(0) probably_damaging(1) TCGA-BR-4256-01 4 40832595 40832595 C A APBB2 Splice_Site p.X510_splice 0.18 TCGA-BR-4256-01 4 42037307 42037307 A - SLC30A9 Frame_Shift_Del p.I211Yfs*2 0.14 TCGA-BR-4256-01 4 44699460 44699460 G A GUF1 Missense_Mutation p.C624Y 0.10 deleterious(0) probably_damaging(1) TCGA-BR-4256-01 4 48559087 48559087 G A FRYL Missense_Mutation p.L1392F 0.12 deleterious(0) probably_damaging(1) TCGA-BR-4256-01 4 5567005 5567005 C A EVC2 Missense_Mutation p.W1213C 0.09 tolerated(0.21) probably_damaging(0.999) TCGA-BR-4256-01 4 55958789 55958789 G A KDR Nonsense_Mutation p.R1022* 0.10 TCGA-BR-4256-01 4 56225516 56225516 T - SRD5A3 Frame_Shift_Del p.S77Pfs*55 0.12 TCGA-BR-4256-01 4 57244433 57244433 G A AASDH Silent p.H183H 0.08 TCGA-BR-4256-01 4 57340350 57340350 A - SRP72 Frame_Shift_Del p.V164Wfs*23 0.16 TCGA-BR-4256-01 4 57777614 57777614 T - REST Frame_Shift_Del p.P272Qfs*48 0.09 TCGA-BR-4256-01 4 6303640 6303640 C T WFS1 Silent p.Y706Y 0.21 TCGA-BR-4256-01 4 71508780 71508780 C T ENAM Missense_Mutation p.A546V 0.12 tolerated(0.24) benign(0.07) TCGA-BR-4256-01 4 71509090 71509090 C T ENAM Silent p.V649V 0.13 TCGA-BR-4256-01 4 71509960 71509960 G T ENAM Missense_Mutation p.R939S 0.12 tolerated(0.14) benign(0.343) TCGA-BR-4256-01 4 76587173 76587173 G A G3BP2 Missense_Mutation p.R13W 0.17 tolerated(0.05) benign(0.196) TCGA-BR-4256-01 4 77816758 77816758 T G SOWAHB Missense_Mutation p.S749R 0.11 deleterious(0) benign(0.307) TCGA-BR-4256-01 4 85645698 85645698 T C WDFY3 Missense_Mutation p.Y2441C 0.17 tolerated(0.07) benign(0.043) TCGA-BR-4256-01 4 87680177 87680177 T C PTPN13 Silent p.P1168P 0.10 TCGA-BR-4256-01 4 88104415 88104415 T C KLHL8 Missense_Mutation p.S298G 0.09 tolerated(0.15) benign(0.031) TCGA-BR-4256-01 4 88732603 88732603 C T IBSP Silent p.S165S 0.21 TCGA-BR-4256-01 4 89349778 89349778 A - HERC6 Frame_Shift_Del p.K663Rfs*27 0.16 TCGA-BR-4256-01 4 96075847 96075847 T A BMPR1B 3'UTR 0.19 TCGA-BR-4256-01 4 9783925 9783925 C T DRD5 Missense_Mutation p.A91V 0.09 deleterious(0) probably_damaging(1) TCGA-BR-4256-01 4 99407915 99407915 G A TSPAN5 Missense_Mutation p.R85W 0.11 deleterious(0) benign(0.444) TCGA-BR-4256-01 4 99823101 99823101 T C EIF4E Silent p.T17T 0.14 TCGA-BR-4256-01 5 100191911 100191911 T G ST8SIA4 Missense_Mutation p.K231N 0.14 benign(0.077) TCGA-BR-4256-01 5 110427937 110427937 C A WDR36 5'UTR 0.14 TCGA-BR-4256-01 5 112862461 112862461 T C YTHDC2 Silent p.T218T 0.13 TCGA-BR-4256-01 5 11364843 11364843 G A CTNND2 Missense_Mutation p.P446L 0.19 tolerated(0.59) benign(0.001) TCGA-BR-4256-01 5 118970140 118970140 T C FAM170A Missense_Mutation p.C233R 0.12 deleterious(0) probably_damaging(1) TCGA-BR-4256-01 5 127599223 127599223 C T FBN2 Missense_Mutation p.V2696M 0.12 deleterious(0) possibly_damaging(0.877) TCGA-BR-4256-01 5 128365383 128365383 C T SLC27A6 Nonsense_Mutation p.R556* 0.11 TCGA-BR-4256-01 5 130840416 130840416 T - RAPGEF6 Frame_Shift_Del p.N386Ifs*20 0.09 TCGA-BR-4256-01 5 131007941 131007941 T - FNIP1 Frame_Shift_Del p.K732Nfs*23 0.14 TCGA-BR-4256-01 5 131326646 131326646 T C ACSL6 Silent p.A95A 0.17 TCGA-BR-4256-01 5 131647935 131647935 G A SLC22A4 Missense_Mutation p.V159M 0.14 deleterious(0.04) benign(0.386) TCGA-BR-4256-01 5 138758500 138758500 A G DNAJC18 Missense_Mutation p.Y226H 0.26 tolerated(0.08) possibly_damaging(0.878) TCGA-BR-4256-01 5 139260458 139260458 C T NRG2 Missense_Mutation p.R325Q 0.14 tolerated(0.29) benign(0.388) TCGA-BR-4256-01 5 140167635 140167635 C T PCDHA1 Missense_Mutation p.A587V 0.16 tolerated_low_confidence(0.11) benign(0.334) TCGA-BR-4256-01 5 140176220 140176220 C T PCDHA2 Silent p.D557D 0.17 TCGA-BR-4256-01 5 140180846 140180846 G A PCDHA3 Missense_Mutation p.A22T 0.11 tolerated_low_confidence(0.46) benign(0.01) TCGA-BR-4256-01 5 140208577 140221805 5:140208577-140221805 - PCDHA7 large deletion 0.09 TCGA-BR-4256-01 5 140222221 140222221 G A PCDHA8 Missense_Mutation p.A439T 0.15 deleterious_low_confidence(0.05) benign(0.053) TCGA-BR-4256-01 5 140256301 140256301 G A PCDHA12 Missense_Mutation p.R415H 0.11 deleterious_low_confidence(0.03) possibly_damaging(0.704) TCGA-BR-4256-01 5 140474624 140474624 G A PCDHB2 Missense_Mutation p.G84R 0.11 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-BR-4256-01 5 140476491 140476491 C T PCDHB2 Missense_Mutation p.S706L 0.18 deleterious_low_confidence(0) possibly_damaging(0.716) TCGA-BR-4256-01 5 140554636 140554636 C T PCDHB7 Silent p.T740T 0.06 TCGA-BR-4256-01 5 140604658 140604658 C T PCDHB14 Silent p.F527F 0.11 TCGA-BR-4256-01 5 140711018 140711018 C A PCDHGA1 Missense_Mutation p.P256Q 0.22 deleterious_low_confidence(0) probably_damaging(0.947) TCGA-BR-4256-01 5 140753898 140753898 G A PCDHGA6 Missense_Mutation p.S83N 0.18 deleterious_low_confidence(0.02) benign(0.073) TCGA-BR-4256-01 5 140789013 140789013 C T PCDHGB6 Missense_Mutation p.T415I 0.08 tolerated(0.47) benign(0.052) TCGA-BR-4256-01 5 140799786 140799786 T C PCDHGB7 Missense_Mutation p.L787P 0.17 tolerated(0.08) benign(0.086) TCGA-BR-4256-01 5 140807526 140807526 C T PCDHGB6 Intron 0.24 TCGA-BR-4256-01 5 140955848 140955848 A G DIAPH1 Silent p.D470D 0.13 TCGA-BR-4256-01 5 14504649 14504649 C T TRIO Silent p.V2853V 0.11 TCGA-BR-4256-01 5 145483816 145483816 A G PLAC8L1 Missense_Mutation p.I20T 0.20 tolerated(0.95) benign(0.001) TCGA-BR-4256-01 5 147473990 147473990 G A SPINK5 Missense_Mutation p.R247H 0.15 deleterious(0.03) probably_damaging(0.964) TCGA-BR-4256-01 5 147478860 147478860 A - SPINK5 Frame_Shift_Del p.A360Qfs*15 0.21 TCGA-BR-4256-01 5 147554938 147554938 T C SPINK14 Missense_Mutation p.F91L 0.23 tolerated(0.17) benign(0.184) TCGA-BR-4256-01 5 147928374 147928374 C T HTR4 Silent p.S70S 0.15 TCGA-BR-4256-01 5 148392271 148392271 A G SH3TC2 Missense_Mutation p.I1027T 0.09 tolerated(1) benign(0.008) TCGA-BR-4256-01 5 148406142 148406142 T C SH3TC2 Missense_Mutation p.T1016A 0.17 deleterious(0) possibly_damaging(0.643) TCGA-BR-4256-01 5 148407408 148407408 G A SH3TC2 Silent p.S629S 0.19 TCGA-BR-4256-01 5 149357647 149357647 T - SLC26A2 Frame_Shift_Del p.F146Lfs*26 0.15 TCGA-BR-4256-01 5 150930358 150930358 A G FAT2 Silent p.V1457V 0.18 TCGA-BR-4256-01 5 150945341 150945341 A G FAT2 Missense_Mutation p.V1051A 0.14 probably_damaging(0.999) TCGA-BR-4256-01 5 151784474 151784474 G A NMUR2 Silent p.C67C 0.11 TCGA-BR-4256-01 5 158621757 158621757 G T RNF145 Missense_Mutation p.A117D 0.16 deleterious(0) probably_damaging(0.933) TCGA-BR-4256-01 5 159738871 159738871 G A CCNJL Silent p.R20R 0.17 TCGA-BR-4256-01 5 160720986 160720986 G A GABRB2 3'UTR 0.22 TCGA-BR-4256-01 5 162943622 162943622 A G MAT2B Missense_Mutation p.K209E 0.08 tolerated(0.34) benign(0.027) TCGA-BR-4256-01 5 16465635 16465635 A G ZNF622 Missense_Mutation p.F47S 0.20 deleterious(0) probably_damaging(0.999) TCGA-BR-4256-01 5 167895969 167895969 T - WWC1 Frame_Shift_Del p.F1104Sfs*6 0.13 TCGA-BR-4256-01 5 169484581 169484581 C A DOCK2 Intron 0.11 TCGA-BR-4256-01 5 174156184 174156184 C T MSX2 Silent p.C134C 0.08 TCGA-BR-4256-01 5 176522590 176522590 C T FGFR4 Missense_Mutation p.R563W 0.33 deleterious(0) probably_damaging(1) TCGA-BR-4256-01 5 176942974 176942974 C A DDX41 Missense_Mutation p.K130N 0.14 tolerated(0.36) possibly_damaging(0.69) TCGA-BR-4256-01 5 178359697 178359697 G A ZFP2 Silent p.T461T 0.11 TCGA-BR-4256-01 5 178392951 178392951 A G ZNF454 Missense_Mutation p.R516G 0.13 deleterious(0) benign(0.405) TCGA-BR-4256-01 5 179271187 179271187 C T C5orf45 Missense_Mutation p.V86M 0.16 deleterious(0) benign(0.035) TCGA-BR-4256-01 5 179290918 179290918 C T TBC1D9B Missense_Mutation p.A1095T 0.13 tolerated(0.61) benign(0.001) TCGA-BR-4256-01 5 180053022 180053023 - G FLT4 Frame_Shift_Ins p.Q423Pfs*4 0.15 TCGA-BR-4256-01 5 23527891 23527891 T C PRDM9 3'UTR 0.11 TCGA-BR-4256-01 5 24537611 24537611 C A CDH10 Missense_Mutation p.R135I 0.14 tolerated(0.46) probably_damaging(0.944) TCGA-BR-4256-01 5 35025913 35025913 G T AGXT2 Silent p.A306A 0.16 TCGA-BR-4256-01 5 42801362 42801362 C T SEPP1 Silent p.S202S 0.10 TCGA-BR-4256-01 5 43488034 43488034 A C C5orf34 Missense_Mutation p.L566R 0.17 deleterious(0) probably_damaging(1) TCGA-BR-4256-01 5 45262407 45262407 C T HCN1 Silent p.P763P 0.14 TCGA-BR-4256-01 5 50685764 50685764 A G ISL1 Missense_Mutation p.T255A 0.21 tolerated(0.19) benign(0.005) TCGA-BR-4256-01 5 54406061 54406061 A G GZMA 3'UTR 0.17 TCGA-BR-4256-01 5 55395927 55395927 C T ANKRD55 3'UTR 0.12 TCGA-BR-4256-01 5 55407543 55407543 G A ANKRD55 Silent p.N344N 0.14 TCGA-BR-4256-01 5 56546862 56546862 A G GPBP1 Missense_Mutation p.I359V 0.15 tolerated(0.32) benign(0.005) TCGA-BR-4256-01 5 56778014 56778014 T C ACTBL2 Missense_Mutation p.H174R 0.17 deleterious_low_confidence(0.01) benign(0.378) TCGA-BR-4256-01 5 63509571 63509571 C T RNF180 Missense_Mutation p.H140Y 0.15 tolerated(1) benign(0.094) TCGA-BR-4256-01 5 64887740 64887740 A G TRIM23 Silent p.T527T 0.12 TCGA-BR-4256-01 5 75597266 75597266 T A SV2C Missense_Mutation p.S632R 0.14 deleterious(0) probably_damaging(0.999) TCGA-BR-4256-01 5 7626360 7626360 G A ADCY2 Silent p.Q217Q 0.11 TCGA-BR-4256-01 5 78077720 78077720 C T ARSB Missense_Mutation p.A431T 0.13 deleterious(0) probably_damaging(0.993) TCGA-BR-4256-01 5 79279521 79279521 G A MTX3 Missense_Mutation p.R248W 0.11 deleterious_low_confidence(0) possibly_damaging(0.53) TCGA-BR-4256-01 5 79368395 79368395 C T THBS4 Intron 0.29 TCGA-BR-4256-01 5 80521544 80521544 G A RASGRF2 Silent p.T1223T 0.14 TCGA-BR-4256-01 5 80550855 80550855 G A CKMT2 Missense_Mutation p.R164Q 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-BR-4256-01 5 80724431 80724431 A T SSBP2 Missense_Mutation p.N343K 0.20 deleterious_low_confidence(0.01) benign(0.297) TCGA-BR-4256-01 5 9044573 9044573 A G SEMA5A Missense_Mutation p.I1006T 0.10 deleterious(0.02) probably_damaging(0.933) TCGA-BR-4256-01 5 94030563 94030563 C T ANKRD32 Missense_Mutation p.A908V 0.16 deleterious(0.03) benign(0.122) TCGA-BR-4256-01 6 100838636 100838636 C T SIM1 Silent p.Q634Q 0.20 TCGA-BR-4256-01 6 100838735 100838735 T - SIM1 Frame_Shift_Del p.K601Nfs*41 0.14 TCGA-BR-4256-01 6 101075830 101075830 A G ASCC3 Missense_Mutation p.V1470A 0.15 deleterious(0) probably_damaging(0.988) TCGA-BR-4256-01 6 107475809 107475809 T - PDSS2 3'UTR 0.16 TCGA-BR-4256-01 6 108066255 108066255 G T SCML4 Silent p.R194R 0.26 TCGA-BR-4256-01 6 10876680 10876681 - A GCM2 Frame_Shift_Ins p.Q152Sfs*7 0.36 TCGA-BR-4256-01 6 111710360 111710360 G A REV3L Missense_Mutation p.R271W 0.09 deleterious(0) probably_damaging(0.997) TCGA-BR-4256-01 6 116747852 116747852 C A DSE Missense_Mutation p.L178I 0.11 tolerated(0.07) benign(0.168) TCGA-BR-4256-01 6 131247750 131247750 G A EPB41L2 Nonsense_Mutation p.Q269* 0.14 TCGA-BR-4256-01 6 132781989 132781989 G A STX7 Missense_Mutation p.R232C 0.15 deleterious(0.02) benign(0.038) TCGA-BR-4256-01 6 137527318 137527319 - T IFNGR1 Frame_Shift_Ins p.E110Rfs*22 0.13 TCGA-BR-4256-01 6 138196150 138196150 C T TNFAIP3 Missense_Mutation p.T155M 0.11 deleterious(0) probably_damaging(1) TCGA-BR-4256-01 6 138199674 138199675 GA - TNFAIP3 Frame_Shift_Del p.E366Gfs*22 0.28 TCGA-BR-4256-01 6 13977897 13977897 C T RNF182 Missense_Mutation p.R183W 0.12 deleterious(0) probably_damaging(0.999) TCGA-BR-4256-01 6 143772146 143772146 A G PEX3 5'UTR 0.13 TCGA-BR-4256-01 6 146243472 146243472 A G SHPRH Silent p.C1244C 0.11 TCGA-BR-4256-01 6 146678795 146678795 G C GRM1 Missense_Mutation p.V523L 0.17 deleterious(0.02) probably_damaging(0.914) TCGA-BR-4256-01 6 146865142 146865142 C T RAB32 Silent p.Y45Y 0.29 TCGA-BR-4256-01 6 147012353 147012353 A G ADGB Silent p.P471P 0.15 TCGA-BR-4256-01 6 149285818 149285818 C T UST Intron 0.30 TCGA-BR-4256-01 6 149777945 149777945 G A ZC3H12D Silent p.D179D 0.14 TCGA-BR-4256-01 6 152718029 152718029 T G SYNE1 Missense_Mutation p.K2479N 0.17 benign(0.037) TCGA-BR-4256-01 6 155578187 155578187 G A TIAM2 Missense_Mutation p.V1680I 0.14 deleterious_low_confidence(0.04) probably_damaging(0.911) TCGA-BR-4256-01 6 157405929 157405929 C T ARID1B Missense_Mutation p.A724V 0.14 probably_damaging(0.998) TCGA-BR-4256-01 6 158923930 158923930 G A TULP4 Missense_Mutation p.D1079N 0.17 deleterious_low_confidence(0) benign(0.287) TCGA-BR-4256-01 6 160638452 160638452 C T SLC22A2 3'UTR 0.12 TCGA-BR-4256-01 6 161560589 161560589 G - AGPAT4 Frame_Shift_Del p.R303Gfs*7 0.25 TCGA-BR-4256-01 6 161990440 161990440 G A PARK2 Missense_Mutation p.P294S 0.12 tolerated(0.14) benign(0.043) TCGA-BR-4256-01 6 16306697 16306697 T C ATXN1 Missense_Mutation p.K771E 0.14 deleterious(0) probably_damaging(0.997) TCGA-BR-4256-01 6 166864694 166864694 T C RPS6KA2 Missense_Mutation p.N376S 0.10 tolerated(0.21) benign(0.006) TCGA-BR-4256-01 6 168430309 168430309 G T KIF25 Missense_Mutation p.R15M 0.10 deleterious(0) benign(0.01) TCGA-BR-4256-01 6 17788023 17788023 T - KIF13A Frame_Shift_Del p.V1116Sfs*23 0.16 TCGA-BR-4256-01 6 17826310 17826310 C T KIF13A Nonsense_Mutation p.W526* 0.19 TCGA-BR-4256-01 6 18122083 18122083 C T NHLRC1 Missense_Mutation p.R252Q 0.20 tolerated(0.29) benign(0.003) TCGA-BR-4256-01 6 24460553 24460553 T C GPLD1 Missense_Mutation p.N321S 0.35 tolerated(0.16) benign(0.015) TCGA-BR-4256-01 6 25830752 25830753 - T SLC17A1 Frame_Shift_Ins p.V12Sfs*19 0.23 TCGA-BR-4256-01 6 25914895 25914895 A T SLC17A2 Missense_Mutation p.M356K 0.23 deleterious(0.01) benign(0.016) TCGA-BR-4256-01 6 28053645 28053645 A C ZNF165 Missense_Mutation p.R129S 0.39 deleterious(0) benign(0.34) TCGA-BR-4256-01 6 29589896 29589896 G A GABBR1 Silent p.P350P 0.17 TCGA-BR-4256-01 6 30888205 30888205 C A VARS2 Silent p.P493P 0.28 TCGA-BR-4256-01 6 31602535 31602535 T C PRRC2A Silent p.S1647S 0.17 TCGA-BR-4256-01 6 31701700 31701700 T C CLIC1 Missense_Mutation p.Q63R 0.24 tolerated(0.09) possibly_damaging(0.747) TCGA-BR-4256-01 6 31902160 31902160 A C C2 Intron 0.10 TCGA-BR-4256-01 6 32917066 32917066 G A HLA-DMA Missense_Mutation p.R255W 0.32 deleterious(0.02) benign(0.026) TCGA-BR-4256-01 6 32977255 32977255 G A HLA-DOA Missense_Mutation p.P20L 0.29 tolerated(0.52) benign(0.01) TCGA-BR-4256-01 6 33048483 33048483 C T HLA-DPB1 Silent p.Y45Y 0.18 TCGA-BR-4256-01 6 33154323 33154323 G T COL11A2 Intron 0.17 TCGA-BR-4256-01 6 35438122 35438124 GAA - RPL10A In_Frame_Del p.K161del 0.17 TCGA-BR-4256-01 6 35547992 35547992 T C FKBP5 Missense_Mutation p.K283E 0.11 deleterious(0) benign(0.372) TCGA-BR-4256-01 6 35773711 35773711 C A LHFPL5 Silent p.S88S 0.14 TCGA-BR-4256-01 6 36168494 36168494 C T BRPF3 Missense_Mutation p.P132L 0.13 deleterious(0.01) probably_damaging(1) TCGA-BR-4256-01 6 38781845 38781845 G A DNAH8 Silent p.K874K 0.13 TCGA-BR-4256-01 6 39580993 39580993 A - KIF6 Frame_Shift_Del p.L204* 0.18 TCGA-BR-4256-01 6 44250020 44250020 C T TCTE1 Missense_Mutation p.E375K 0.16 tolerated(0.51) benign(0.053) TCGA-BR-4256-01 6 45405710 45405710 G A RUNX2 Missense_Mutation p.V203I 0.10 tolerated(0.05) probably_damaging(0.996) TCGA-BR-4256-01 6 46669663 46669663 C T TDRD6 3'UTR 0.15 TCGA-BR-4256-01 6 55142277 55142277 G A HCRTR2 Missense_Mutation p.A288T 0.12 tolerated(0.53) benign(0.023) TCGA-BR-4256-01 6 56496731 56496731 G T DST Missense_Mutation p.L768M 0.18 benign(0.275) TCGA-BR-4256-01 6 7226757 7226757 G A RREB1 Silent p.A255A 0.15 TCGA-BR-4256-01 6 74117732 74117732 A - DDX43 Frame_Shift_Del p.G365Vfs*2 0.12 TCGA-BR-4256-01 6 75861629 75861629 T C COL12A1 Silent p.A1318A 0.11 TCGA-BR-4256-01 6 75899338 75899338 C T COL12A1 Silent p.Q196Q 0.10 TCGA-BR-4256-01 6 80718203 80718203 T A TTK Missense_Mutation p.S155T 0.14 deleterious(0.03) possibly_damaging(0.816) TCGA-BR-4256-01 6 83667139 83667139 G A UBE3D Silent p.S347S 0.09 TCGA-BR-4256-01 6 83884176 83884176 T C PGM3 Missense_Mutation p.I415V 0.12 tolerated(0.07) benign(0.353) TCGA-BR-4256-01 6 85472307 85472307 C T TBX18 Missense_Mutation p.R151H 0.15 deleterious(0) probably_damaging(0.995) TCGA-BR-4256-01 6 87964590 87964590 C G ZNF292 Missense_Mutation p.Q415E 0.11 deleterious(0.05) probably_damaging(0.997) TCGA-BR-4256-01 6 90024926 90024926 C G GABRR2 5'UTR 0.11 TCGA-BR-4256-01 6 90024927 90024927 T G GABRR2 5'UTR 0.11 TCGA-BR-4256-01 6 90494779 90494779 A T MDN1 Nonsense_Mutation p.Y467* 0.15 TCGA-BR-4256-01 6 99958034 99958034 A G USP45 Silent p.T21T 0.12 TCGA-BR-4256-01 7 100086071 100086071 G A NYAP1 Missense_Mutation p.G243S 0.16 tolerated_low_confidence(0.44) possibly_damaging(0.879) TCGA-BR-4256-01 7 100420130 100420130 G A EPHB4 Missense_Mutation p.H191Y 0.15 deleterious(0) possibly_damaging(0.883) TCGA-BR-4256-01 7 100453458 100453458 C T SLC12A9 Silent p.A149A 0.18 TCGA-BR-4256-01 7 100478930 100478930 C T SRRT Silent p.R49R 0.12 TCGA-BR-4256-01 7 100682851 100682851 C T MUC17 Silent p.D2718D 0.10 TCGA-BR-4256-01 7 102087353 102087353 G A ORAI2 Missense_Mutation p.V207M 0.32 deleterious(0.01) probably_damaging(0.998) TCGA-BR-4256-01 7 104753431 104753431 C A KMT2E Missense_Mutation p.P1743H 0.21 deleterious_low_confidence(0) benign(0.043) TCGA-BR-4256-01 7 105653434 105653434 G A CDHR3 Missense_Mutation p.G394D 0.14 tolerated(0.17) benign(0.004) TCGA-BR-4256-01 7 107399402 107399402 C - CBLL1 Frame_Shift_Del p.P420Lfs*20 0.14 TCGA-BR-4256-01 7 107580698 107580698 G A LAMB1 Missense_Mutation p.T1166M 0.13 deleterious(0) probably_damaging(0.932) TCGA-BR-4256-01 7 107807442 107807442 T C NRCAM Silent p.T1130T 0.13 TCGA-BR-4256-01 7 110764283 110764283 C T LRRN3 Silent p.G485G 0.09 TCGA-BR-4256-01 7 11080314 11080314 G A PHF14 Missense_Mutation p.A698T 0.15 tolerated(0.3) benign(0.01) TCGA-BR-4256-01 7 117417627 117417627 T C CTTNBP2 Missense_Mutation p.I906V 0.12 tolerated(0.2) benign(0.053) TCGA-BR-4256-01 7 12668796 12668796 A G SCIN Missense_Mutation p.D423G 0.07 deleterious(0) probably_damaging(1) TCGA-BR-4256-01 7 130008355 130008355 G A CPA5 Missense_Mutation p.A410T 0.12 deleterious(0.01) probably_damaging(0.962) TCGA-BR-4256-01 7 131859587 131859587 G A PLXNA4 Missense_Mutation p.R1323W 0.16 deleterious(0) probably_damaging(1) TCGA-BR-4256-01 7 135106951 135106951 T - CNOT4 Frame_Shift_Del p.N109Tfs*6 0.17 TCGA-BR-4256-01 7 135291626 135291627 - A NUP205 Frame_Shift_Ins p.P1014Tfs*48 0.18 TCGA-BR-4256-01 7 135301989 135301989 T C NUP205 Silent p.N1228N 0.18 TCGA-BR-4256-01 7 138603265 138603265 C T KIAA1549 Silent p.A369A 0.10 TCGA-BR-4256-01 7 142574257 142574257 G A TRPV6 Silent p.Y222Y 0.12 TCGA-BR-4256-01 7 143096842 143096842 C T EPHA1 Missense_Mutation p.R246H 0.11 deleterious(0.03) possibly_damaging(0.822) TCGA-BR-4256-01 7 143632553 143632553 C T OR2F2 Silent p.S76S 0.10 TCGA-BR-4256-01 7 143632955 143632955 T C OR2F2 Silent p.P210P 0.10 TCGA-BR-4256-01 7 143657708 143657708 T G OR2F1 Silent p.L215L 0.06 TCGA-BR-4256-01 7 143806951 143806951 C A OR2A2 Silent p.S92S 0.14 TCGA-BR-4256-01 7 144070331 144070331 C T ARHGEF5 Missense_Mutation p.T1365I 0.14 tolerated(0.06) possibly_damaging(0.573) TCGA-BR-4256-01 7 148851131 148851131 C T ZNF398 Missense_Mutation p.A40V 0.25 deleterious(0.02) possibly_damaging(0.652) TCGA-BR-4256-01 7 150554063 150554063 A G AOC1 Missense_Mutation p.T169A 0.19 tolerated(0.08) benign(0.14) TCGA-BR-4256-01 7 150554734 150554734 G A AOC1 Silent p.P392P 0.18 TCGA-BR-4256-01 7 150710279 150710279 C - ATG9B 3'UTR 0.10 TCGA-BR-4256-01 7 151860524 151860524 G A KMT2C Missense_Mutation p.P3380S 0.19 possibly_damaging(0.468) TCGA-BR-4256-01 7 1527082 1527082 C G INTS1 Silent p.G840G 0.20 TCGA-BR-4256-01 7 156976685 156976687 GAG - UBE3C In_Frame_Del p.E371del 0.11 TCGA-BR-4256-01 7 17379636 17379636 C - AHR Frame_Shift_Del p.T731Lfs*5 0.17 TCGA-BR-4256-01 7 20793131 20793131 T C ABCB5 Splice_Site p.X1192_splice 0.16 TCGA-BR-4256-01 7 21742378 21742378 T A DNAH11 Silent p.A2084A 0.19 TCGA-BR-4256-01 7 22175700 22175700 T - RAPGEF5 Frame_Shift_Del p.K638Rfs*2 0.14 TCGA-BR-4256-01 7 22197474 22197474 T - RAPGEF5 Frame_Shift_Del p.K366Rfs*22 0.22 TCGA-BR-4256-01 7 23293063 23293063 A - GPNMB Frame_Shift_Del p.N71Tfs*12 0.14 TCGA-BR-4256-01 7 2418770 2418770 A G EIF3B Missense_Mutation p.E745G 0.12 deleterious(0.03) possibly_damaging(0.655) TCGA-BR-4256-01 7 26242614 26242614 A - CBX3 5'UTR p.M1? 0.19 TCGA-BR-4256-01 7 27148111 27148111 C T HOXA3 Missense_Mutation p.G252D 0.11 tolerated(0.06) possibly_damaging(0.622) TCGA-BR-4256-01 7 27855995 27855995 G A TAX1BP1 Missense_Mutation p.A598T 0.14 tolerated(0.42) benign(0.001) TCGA-BR-4256-01 7 31862835 31862835 G A PDE1C Silent p.A538A 0.27 TCGA-BR-4256-01 7 33388725 33388725 G A BBS9 Missense_Mutation p.V459I 0.15 tolerated(0.37) benign(0.002) TCGA-BR-4256-01 7 37251045 37251045 G A ELMO1 Silent p.S344S 0.14 TCGA-BR-4256-01 7 40132819 40132819 C A CDK13 Missense_Mutation p.P1224H 0.11 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BR-4256-01 7 4218194 4218194 G A SDK1 Missense_Mutation p.V1692M 0.08 deleterious(0.05) possibly_damaging(0.814) TCGA-BR-4256-01 7 44104780 44104780 G A PGAM2 Missense_Mutation p.R117C 0.30 deleterious(0.05) probably_damaging(0.999) TCGA-BR-4256-01 7 44153301 44153301 T C AEBP1 Missense_Mutation p.I973T 0.16 deleterious(0.04) benign(0.212) TCGA-BR-4256-01 7 44187337 44187337 C T GCK Missense_Mutation p.A260T 0.22 deleterious(0) possibly_damaging(0.621) TCGA-BR-4256-01 7 48068494 48068494 A - SUN3 Frame_Shift_Del p.F14Lfs*29 0.22 TCGA-BR-4256-01 7 54823470 54823470 A G SEC61G Splice_Site p.X66_splice 0.13 TCGA-BR-4256-01 7 55223600 55223600 G A EGFR Missense_Mutation p.V323I 0.18 tolerated(1) benign(0.009) TCGA-BR-4256-01 7 56126195 56126197 TTG - CCT6A In_Frame_Del p.V291del 0.15 TCGA-BR-4256-01 7 64452191 64452191 A C ERV3-1 Missense_Mutation p.L405R 0.15 deleterious(0.03) benign(0.208) TCGA-BR-4256-01 7 65220825 65220825 T - SNORA22 3'Flank 0.12 TCGA-BR-4256-01 7 66479405 66479405 C A TYW1 Missense_Mutation p.L143I 0.21 tolerated(0.16) benign(0.088) TCGA-BR-4256-01 7 6791127 6791127 A - RSPH10B2 5'Flank 0.21 TCGA-BR-4256-01 7 72159738 72159738 C T MIR4650-2 5'Flank 0.12 TCGA-BR-4256-01 7 72863875 72863875 C T BAZ1B Missense_Mutation p.G1242D 0.11 tolerated(0.34) possibly_damaging(0.717) TCGA-BR-4256-01 7 76825822 76825822 C T FGL2 Missense_Mutation p.R365Q 0.08 tolerated(0.07) possibly_damaging(0.473) TCGA-BR-4256-01 7 8062115 8062115 A G GLCCI1 Silent p.T204T 0.16 TCGA-BR-4256-01 7 8198199 8198199 C T ICA1 Silent p.A221A 0.08 TCGA-BR-4256-01 7 82580130 82580130 C T PCLO Silent p.E3258E 0.11 TCGA-BR-4256-01 7 82584742 82584742 G A PCLO Missense_Mutation p.R1843C 0.12 unknown(0) TCGA-BR-4256-01 7 8475318 8475318 G A NXPH1 5'UTR 0.16 TCGA-BR-4256-01 7 86542392 86542392 G - KIAA1324L Frame_Shift_Del p.C621Afs*78 0.13 TCGA-BR-4256-01 7 87913386 87913386 A G STEAP4 Missense_Mutation p.Y67H 0.13 tolerated(1) benign(0.012) TCGA-BR-4256-01 7 92926504 92926504 T C CCDC132 Missense_Mutation p.L437S 0.21 deleterious(0) probably_damaging(0.998) TCGA-BR-4256-01 7 99129897 99129897 C A ZKSCAN5 3'UTR 0.10 TCGA-BR-4256-01 7 99262895 99262895 T C CYP3A5 Silent p.S188S 0.10 TCGA-BR-4256-01 7 99474306 99474306 G A OR2AE1 Silent p.V117V 0.14 TCGA-BR-4256-01 7 99669329 99669329 C T ZNF3 Missense_Mutation p.D260N 0.14 deleterious(0) probably_damaging(0.984) TCGA-BR-4256-01 7 99821527 99821527 G A GATS Missense_Mutation p.T130M 0.13 deleterious(0.01) probably_damaging(0.993) TCGA-BR-4256-01 8 100147902 100147902 C T VPS13B Nonsense_Mutation p.R502* 0.18 TCGA-BR-4256-01 8 101065081 101065081 G T RGS22 Silent p.T546T 0.12 TCGA-BR-4256-01 8 103293613 103293613 A G UBR5 Missense_Mutation p.L1944S 0.13 deleterious(0) probably_damaging(0.986) TCGA-BR-4256-01 8 103572812 103572812 G A ODF1 Silent p.S151S 0.14 TCGA-BR-4256-01 8 106813750 106813750 C A ZFPM2 Silent p.A480A 0.17 TCGA-BR-4256-01 8 10755778 10755778 C T XKR6 Missense_Mutation p.R537Q 0.11 tolerated(0.29) benign(0.033) TCGA-BR-4256-01 8 110100047 110100047 T G TRHR Silent p.T102T 0.12 TCGA-BR-4256-01 8 110476610 110476610 A G PKHD1L1 Missense_Mutation p.I2517V 0.14 tolerated(1) benign(0.001) TCGA-BR-4256-01 8 113237101 113237102 - T CSMD3 Frame_Shift_Ins p.A3675Sfs*4 0.09 TCGA-BR-4256-01 8 113267597 113267597 T C CSMD3 Missense_Mutation p.I3308V 0.11 tolerated(0.1) possibly_damaging(0.626) TCGA-BR-4256-01 8 11637250 11637250 G A NEIL2 Silent p.G94G 0.23 TCGA-BR-4256-01 8 118819472 118819472 C T EXT1 Missense_Mutation p.A623T 0.09 deleterious(0) probably_damaging(0.997) TCGA-BR-4256-01 8 120435303 120435303 C T NOV Silent p.T335T 0.10 TCGA-BR-4256-01 8 124267603 124267603 C T ZHX1 Missense_Mutation p.R195Q 0.09 deleterious(0.03) possibly_damaging(0.701) TCGA-BR-4256-01 8 126448362 126448362 C A TRIB1 Silent p.T256T 0.09 TCGA-BR-4256-01 8 128752729 128752731 CTT - MYC In_Frame_Del p.S298del 0.11 TCGA-BR-4256-01 8 12878931 12878931 G A KIAA1456 Missense_Mutation p.R248H 0.15 deleterious(0) probably_damaging(0.999) TCGA-BR-4256-01 8 133146585 133146585 T G KCNQ3 Missense_Mutation p.K584T 0.14 tolerated(0.18) probably_damaging(0.999) TCGA-BR-4256-01 8 133823343 133823343 C - PHF20L1 Frame_Shift_Del p.Y301Tfs*63 0.08 TCGA-BR-4256-01 8 139153505 139153505 C T FAM135B Silent p.T1242T 0.13 TCGA-BR-4256-01 8 141803473 141803473 C A PTK2 Silent p.R368R 0.16 TCGA-BR-4256-01 8 144332457 144332457 C T ZFP41 Silent p.C148C 0.17 TCGA-BR-4256-01 8 144351578 144351579 - G GLI4 Frame_Shift_Ins p.D6Gfs*44 0.12 TCGA-BR-4256-01 8 145066937 145066937 G A GRINA Silent p.A348A 0.12 TCGA-BR-4256-01 8 145095846 145095846 C T SPATC1 Missense_Mutation p.P382S 0.09 deleterious(0.03) probably_damaging(0.998) TCGA-BR-4256-01 8 145623823 145623823 G A CPSF1 Missense_Mutation p.T588M 0.14 deleterious(0.02) probably_damaging(0.999) TCGA-BR-4256-01 8 1824891 1824892 - A ARHGEF10 Frame_Shift_Ins p.Q281Afs*5 0.13 TCGA-BR-4256-01 8 23155604 23155605 - T LOXL2 Frame_Shift_Ins p.F760Vfs*2 0.18 TCGA-BR-4256-01 8 23709885 23709885 C T STC1 Missense_Mutation p.R44H 0.08 tolerated(0.53) probably_damaging(0.999) TCGA-BR-4256-01 8 26238378 26238378 A G BNIP3L 5'Flank 0.13 TCGA-BR-4256-01 8 27762303 27762303 C A SCARA5 Missense_Mutation p.G382V 0.10 tolerated(0.1) benign(0.016) TCGA-BR-4256-01 8 2820754 2820754 G A CSMD1 Silent p.P3148P 0.16 TCGA-BR-4256-01 8 2830689 2830689 C T CSMD1 Missense_Mutation p.R2958H 0.09 possibly_damaging(0.66) TCGA-BR-4256-01 8 28413394 28413394 C T FZD3 Silent p.L565L 0.11 TCGA-BR-4256-01 8 33367337 33367337 A G TTI2 Missense_Mutation p.V254A 0.12 deleterious(0) benign(0.021) TCGA-BR-4256-01 8 37696574 37696574 C T GPR124 Missense_Mutation p.T787I 0.15 tolerated(0.52) possibly_damaging(0.679) TCGA-BR-4256-01 8 38139077 38139077 C T WHSC1L1 Missense_Mutation p.G1176S 0.18 deleterious(0) probably_damaging(0.984) TCGA-BR-4256-01 8 41525866 41525866 G T ANK1 Silent p.S1812S 0.12 TCGA-BR-4256-01 8 42958705 42958705 C T POMK Missense_Mutation p.P5L 0.11 tolerated_low_confidence(0.15) benign(0.001) TCGA-BR-4256-01 8 48701555 48701555 T - PRKDC Frame_Shift_Del p.N3604Tfs*48 0.12 TCGA-BR-4256-01 8 48706944 48706944 G A PRKDC Missense_Mutation p.P3525L 0.11 probably_damaging(1) TCGA-BR-4256-01 8 48740816 48740817 - T PRKDC Frame_Shift_Ins p.N2829Kfs*16 0.12 TCGA-BR-4256-01 8 54730032 54730032 G A ATP6V1H Missense_Mutation p.A122V 0.16 tolerated(1) possibly_damaging(0.891) TCGA-BR-4256-01 8 55372486 55372486 C T SOX17 Silent p.H392H 0.21 TCGA-BR-4256-01 8 55540063 55540063 T C RP1 Silent p.D1207D 0.16 TCGA-BR-4256-01 8 56015096 56015096 C T XKR4 Silent p.D16D 0.09 TCGA-BR-4256-01 8 59404099 59404099 C T CYP7A1 Missense_Mutation p.A484T 0.10 deleterious(0.01) probably_damaging(0.973) TCGA-BR-4256-01 8 61743037 61743037 A G CHD7 Missense_Mutation p.T1227A 0.12 benign(0.003) TCGA-BR-4256-01 8 62588788 62588788 C T ASPH Intron 0.11 TCGA-BR-4256-01 8 6338243 6338243 A G MCPH1 Missense_Mutation p.N661S 0.13 tolerated(0.53) benign(0.001) TCGA-BR-4256-01 8 66517566 66517566 C T ARMC1 Missense_Mutation p.A197T 0.12 deleterious(0.02) benign(0.272) TCGA-BR-4256-01 8 67364208 67364208 C A ADHFE1 Missense_Mutation p.T252N 0.12 deleterious(0) probably_damaging(0.956) TCGA-BR-4256-01 8 69104648 69104648 T C PREX2 Missense_Mutation p.C1498R 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.641) TCGA-BR-4256-01 8 71495964 71495964 T A TRAM1 Missense_Mutation p.T271S 0.12 deleterious(0.04) benign(0.437) TCGA-BR-4256-01 8 73849496 73849496 G A KCNB2 Missense_Mutation p.D636N 0.12 tolerated_low_confidence(0.55) benign(0.001) TCGA-BR-4256-01 8 77767139 77767139 G A ZFHX4 Missense_Mutation p.R2661K 0.11 probably_damaging(0.937) TCGA-BR-4256-01 8 87951921 87951921 T G CNBD1 Missense_Mutation p.L124V 0.14 tolerated(0.07) benign(0.376) TCGA-BR-4256-01 8 90990491 90990491 G T NBN Missense_Mutation p.L181M 0.20 deleterious(0.03) benign(0.297) TCGA-BR-4256-01 8 92998448 92998448 G A RUNX1T1 Missense_Mutation p.R406W 0.12 deleterious(0) benign(0.117) TCGA-BR-4256-01 8 98289167 98289167 C T TSPYL5 Silent p.P302P 0.12 TCGA-BR-4256-01 8 99441361 99441361 C T KCNS2 Missense_Mutation p.T385M 0.13 deleterious(0.04) benign(0.342) TCGA-BR-4256-01 9 103054644 103054644 G - INVS Frame_Shift_Del p.C702Lfs*41 0.13 TCGA-BR-4256-01 9 104187169 104187169 C T ALDOB Missense_Mutation p.A319T 0.14 deleterious(0.01) benign(0.002) TCGA-BR-4256-01 9 112017804 112017804 G A EPB41L4B Missense_Mutation p.R386C 0.22 deleterious(0) probably_damaging(0.998) TCGA-BR-4256-01 9 112144688 112144688 C T PTPN3 Missense_Mutation p.A808T 0.21 deleterious(0.02) possibly_damaging(0.783) TCGA-BR-4256-01 9 114415422 114415422 G A DNAJC25 Missense_Mutation p.A335T 0.12 deleterious(0) probably_damaging(0.997) TCGA-BR-4256-01 9 115166406 115166406 T G HSDL2 Missense_Mutation p.L50R 0.11 deleterious(0) probably_damaging(1) TCGA-BR-4256-01 9 117535 117535 C T FOXD4 Silent p.R195R 0.08 TCGA-BR-4256-01 9 123334315 123334315 G T CDK5RAP2 Missense_Mutation p.L22I 0.15 deleterious(0.03) benign(0.364) TCGA-BR-4256-01 9 125377600 125377600 A G OR1Q1 Missense_Mutation p.N195S 0.13 tolerated(0.07) benign(0.153) TCGA-BR-4256-01 9 125563309 125563309 G A OR1K1 Missense_Mutation p.R303Q 0.12 tolerated(0.11) benign(0.001) TCGA-BR-4256-01 9 126132851 126132851 C A CRB2 Missense_Mutation p.L507M 0.13 deleterious(0) possibly_damaging(0.887) TCGA-BR-4256-01 9 127089654 127089654 C T NEK6 Silent p.G218G 0.14 TCGA-BR-4256-01 9 127650643 127650643 G A GOLGA1 Silent p.F598F 0.13 TCGA-BR-4256-01 9 129595614 129595614 G A ZBTB43 Missense_Mutation p.V276M 0.17 tolerated(0.31) benign(0) TCGA-BR-4256-01 9 129728214 129728214 C - RALGPS1 Frame_Shift_Del p.P51Qfs*10 0.13 TCGA-BR-4256-01 9 130453183 130453183 C T STXBP1 3'UTR 0.12 TCGA-BR-4256-01 9 131395517 131395517 C T SPTAN1 Silent p.C2446C 0.11 TCGA-BR-4256-01 9 131670897 131670897 C T LRRC8A Missense_Mutation p.A485V 0.32 tolerated(0.52) benign(0.346) TCGA-BR-4256-01 9 132862925 132862927 CTC - GPR107 In_Frame_Del p.S321del 0.25 TCGA-BR-4256-01 9 134073110 134073110 T - NUP214 Frame_Shift_Del p.F1411Lfs*22 0.19 TCGA-BR-4256-01 9 134340174 134340174 C T PRRC2B Missense_Mutation p.R477W 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-BR-4256-01 9 135139706 135139706 G T SETX Missense_Mutation p.H2652N 0.15 tolerated_low_confidence(0.05) benign(0.138) TCGA-BR-4256-01 9 135555180 135555180 G T GTF3C4 Missense_Mutation p.R725I 0.15 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-BR-4256-01 9 137019598 137019598 C - WDR5 Frame_Shift_Del p.V217Cfs*4 0.26 TCGA-BR-4256-01 9 138376344 138376344 C T PPP1R26 5'UTR 0.15 TCGA-BR-4256-01 9 138714112 138714112 C T CAMSAP1 Missense_Mutation p.A799T 0.13 tolerated(0.45) benign(0.001) TCGA-BR-4256-01 9 139757844 139757844 G A EDF1 Missense_Mutation p.R63W 0.27 deleterious(0.02) benign(0.336) TCGA-BR-4256-01 9 15744290 15744290 A - CCDC171 Frame_Shift_Del p.N692Tfs*5 0.13 TCGA-BR-4256-01 9 20413952 20413952 T - MLLT3 Frame_Shift_Del p.R298Gfs*19 0.18 TCGA-BR-4256-01 9 20988425 20988425 C T FOCAD Silent p.D1667D 0.11 TCGA-BR-4256-01 9 35075485 35075485 T - FANCG Frame_Shift_Del p.V471Wfs*47 0.16 TCGA-BR-4256-01 9 35706102 35706102 C T TLN1 Missense_Mutation p.A1790T 0.16 tolerated(0.69) benign(0.046) TCGA-BR-4256-01 9 36227249 36227249 A G GNE Missense_Mutation p.M457T 0.13 tolerated_low_confidence(0.44) benign(0.108) TCGA-BR-4256-01 9 6604759 6604759 A C GLDC Missense_Mutation p.L296R 0.13 deleterious(0) probably_damaging(1) TCGA-BR-4256-01 9 71854929 71854929 T - TJP2 Frame_Shift_Del p.F844Sfs*12 0.17 TCGA-BR-4256-01 9 72833435 72833435 T G MAMDC2 Missense_Mutation p.L612V 0.13 tolerated(0.11) possibly_damaging(0.822) TCGA-BR-4256-01 9 79318865 79318865 C T PRUNE2 Missense_Mutation p.R2555H 0.11 tolerated(1) benign(0.001) TCGA-BR-4256-01 9 79323912 79323912 C T PRUNE2 Missense_Mutation p.R1093Q 0.13 deleterious(0.04) probably_damaging(0.989) TCGA-BR-4256-01 9 79841516 79841516 T C VPS13A Splice_Site p.X453_splice 0.12 TCGA-BR-4256-01 9 8319960 8319960 G A PTPRD Silent p.G1847G 0.20 TCGA-BR-4256-01 9 84607460 84607460 G A SPATA31D1 Missense_Mutation p.R692Q 0.14 tolerated(0.28) benign(0.114) TCGA-BR-4256-01 9 85607893 85607893 A T RASEF Silent p.A656A 0.13 TCGA-BR-4256-01 9 86616999 86616999 C G RMI1 Missense_Mutation p.C366W 0.22 tolerated(0.17) benign(0.33) TCGA-BR-4256-01 9 92020286 92020286 C T SEMA4D Missense_Mutation p.R29Q 0.16 deleterious(0) probably_damaging(0.996) TCGA-BR-4256-01 9 95069255 95069255 T - NOL8 Frame_Shift_Del p.K913Rfs*4 0.13 TCGA-BR-4256-01 9 97321299 97321299 C T FBP2 Missense_Mutation p.R314Q 0.11 deleterious(0) benign(0.191) TCGA-BR-4256-01 9 97355861 97355861 G A FBP2 Missense_Mutation p.R50C 0.21 deleterious(0) probably_damaging(0.983) TCGA-BR-4256-01 9 99521052 99521052 T G ZNF510 3'UTR 0.07 TCGA-BR-4256-01 9 99800233 99800233 C T CTSV Silent p.Q31Q 0.16 TCGA-BR-4256-01 X 101139336 101139336 T A ZMAT1 Nonsense_Mutation p.R355* 0.32 TCGA-BR-4256-01 X 101911911 101911911 G A GPRASP1 Missense_Mutation p.A1024T 0.27 deleterious(0.01) probably_damaging(0.928) TCGA-BR-4256-01 X 106185215 106185215 C T MORC4 Silent p.Q871Q 0.19 TCGA-BR-4256-01 X 109931837 109931837 C T CHRDL1 Missense_Mutation p.G325S 0.33 deleterious(0.04) probably_damaging(0.994) TCGA-BR-4256-01 X 110005996 110005996 C T CHRDL1 Missense_Mutation p.R45K 0.27 tolerated(0.84) possibly_damaging(0.509) TCGA-BR-4256-01 X 114953369 114953369 G A RP1-241P17.4 Nonsense_Mutation p.R61* 0.32 TCGA-BR-4256-01 X 115582769 115582770 - T SLC6A14 Frame_Shift_Ins p.S367Ffs*23 0.27 TCGA-BR-4256-01 X 117960020 117960020 C T ZCCHC12 Silent p.D271D 0.26 TCGA-BR-4256-01 X 128724180 128724180 C A OCRL Missense_Mutation p.T880N 0.32 tolerated(0.22) benign(0.305) TCGA-BR-4256-01 X 12939191 12939191 T - TLR8 Frame_Shift_Del p.F679Lfs*25 0.20 TCGA-BR-4256-01 X 129546425 129546425 G A RBMX2 Missense_Mutation p.R191H 0.20 tolerated(0.3) benign(0.003) TCGA-BR-4256-01 X 130408789 130408789 T C IGSF1 Missense_Mutation p.I1184V 0.32 tolerated(0.38) possibly_damaging(0.876) TCGA-BR-4256-01 X 132161205 132161205 A - USP26 Frame_Shift_Del p.F348Lfs*7 0.25 TCGA-BR-4256-01 X 134988609 134988609 A - SAGE1 Frame_Shift_Del p.N213Mfs*11 0.19 TCGA-BR-4256-01 X 1401634 1401634 T C CSF2RA Missense_Mutation p.L13S 0.12 tolerated(0.07) unknown(0) TCGA-BR-4256-01 X 140995387 140995387 G T MAGEC1 Missense_Mutation p.G733W 0.31 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-BR-4256-01 X 144904763 144904763 A G SLITRK2 Missense_Mutation p.R274G 0.24 tolerated(0.29) benign(0.158) TCGA-BR-4256-01 X 151376568 151376568 T G GABRA3 Missense_Mutation p.N228T 0.27 tolerated(0.57) benign(0.014) TCGA-BR-4256-01 X 152037483 152037483 T A NSDHL Missense_Mutation p.S315R 0.39 tolerated(0.39) benign(0.008) TCGA-BR-4256-01 X 153053045 153053045 G A IDH3G Missense_Mutation p.A183V 0.32 deleterious(0.01) benign(0.067) TCGA-BR-4256-01 X 153631964 153631964 C T DNASE1L1 Splice_Site p.X104_splice 0.22 TCGA-BR-4256-01 X 155232611 155232611 C T IL9R Silent p.G23G 0.08 TCGA-BR-4256-01 X 155235812 155235812 G A IL9R Silent p.L282L 0.13 TCGA-BR-4256-01 X 15822297 15822297 C T ZRSR2 Nonsense_Mutation p.R126* 0.16 TCGA-BR-4256-01 X 15845295 15845295 A - AP1S2 3'UTR 0.60 TCGA-BR-4256-01 X 41029259 41029259 G C USP9X Missense_Mutation p.G883A 0.27 deleterious(0) probably_damaging(0.991) TCGA-BR-4256-01 X 44703423 44703423 G A DUSP21 Silent p.Q15Q 0.39 TCGA-BR-4256-01 X 47424708 47424708 G A ARAF Silent p.S172S 0.29 TCGA-BR-4256-01 X 49143388 49143388 G A PPP1R3F Missense_Mutation p.A746T 0.29 deleterious_low_confidence(0.04) benign(0.011) TCGA-BR-4256-01 X 65418738 65418741 TTCT - HEPH Frame_Shift_Del p.L634Sfs*90 0.32 TCGA-BR-4256-01 X 74651314 74651314 G A ZDHHC15 Missense_Mutation p.R141C 0.22 deleterious(0) probably_damaging(0.999) TCGA-BR-4256-01 X 83616610 83616610 C T HDX Missense_Mutation p.R439H 0.20 deleterious(0) probably_damaging(0.999) TCGA-BR-4256-01 X 86919768 86919768 G T KLHL4 Missense_Mutation p.D644Y 0.35 deleterious(0) probably_damaging(0.975) TCGA-BR-4256-01 X 86924311 86924311 C A KLHL4 Intron 0.18 TCGA-BR-4256-01 X 91132491 91132491 C A PCDH11X Missense_Mutation p.L418M 0.25 tolerated(0.06) probably_damaging(0.912) TCGA-BR-4256-01 Y 16953056 16953056 A G NLGN4Y Missense_Mutation p.M789V 0.38 deleterious_low_confidence(0.03) possibly_damaging(0.448) TCGA-BR-4256-01 Y 8657060 8657060 G A TTTY11 RNA 0.21 TCGA-BR-4257-01 10 100182223 100182223 C T HPS1 Missense_Mutation p.R549H 0.20 deleterious(0) probably_damaging(0.979) TCGA-BR-4257-01 10 101553677 101553677 G A ABCC2 Missense_Mutation p.C166Y 0.19 tolerated(0.43) benign(0.021) TCGA-BR-4257-01 10 102710474 102710474 A C FAM178A Missense_Mutation p.E1098D 0.26 deleterious(0) probably_damaging(0.986) TCGA-BR-4257-01 10 103295163 103295163 G A BTRC Missense_Mutation p.R467Q 0.23 deleterious(0.01) probably_damaging(0.93) TCGA-BR-4257-01 10 104173805 104173805 G A PSD Missense_Mutation p.S425L 0.31 deleterious(0.01) probably_damaging(0.994) TCGA-BR-4257-01 10 105793033 105793033 G A COL17A1 Silent p.Y1419Y 0.40 TCGA-BR-4257-01 10 105798255 105798255 G A COL17A1 Silent p.G993G 0.35 TCGA-BR-4257-01 10 112053814 112053814 T C SMNDC1 3'UTR 0.26 TCGA-BR-4257-01 10 112343281 112343281 A G SMC3 Missense_Mutation p.E315G 0.18 tolerated(0.14) benign(0.003) TCGA-BR-4257-01 10 119305240 119305240 G A EMX2 Silent p.R168R 0.43 TCGA-BR-4257-01 10 121339499 121339499 A G TIAL1 Missense_Mutation p.M149T 0.21 tolerated(0.24) benign(0.073) TCGA-BR-4257-01 10 123892188 123892188 G A TACC2 Missense_Mutation p.A1880T 0.35 possibly_damaging(0.543) TCGA-BR-4257-01 10 124391375 124391375 C T DMBT1 Silent p.N1988N 0.18 TCGA-BR-4257-01 10 124671216 124671216 C T FAM24A Silent p.A22A 0.23 TCGA-BR-4257-01 10 124917344 124917344 T C BUB3 Missense_Mutation p.L122P 0.34 deleterious(0.02) possibly_damaging(0.897) TCGA-BR-4257-01 10 127412448 127412448 A G EDRF1 Silent p.G151G 0.05 TCGA-BR-4257-01 10 128795065 128795065 C A DOCK1 Missense_Mutation p.P176Q 0.26 deleterious(0) possibly_damaging(0.804) TCGA-BR-4257-01 10 135195102 135195102 G A PAOX Silent p.S269S 0.35 TCGA-BR-4257-01 10 135195153 135195153 C A PAOX Silent p.T286T 0.32 TCGA-BR-4257-01 10 15290697 15290697 G A FAM171A1 Missense_Mutation p.T232M 0.18 tolerated(0.08) benign(0.051) TCGA-BR-4257-01 10 16932369 16932369 C T CUBN Splice_Site p.X2919_splice 0.19 TCGA-BR-4257-01 10 17735288 17735290 AAG - STAM In_Frame_Del p.E174del 0.22 TCGA-BR-4257-01 10 17747022 17747022 A G STAM Missense_Mutation p.R352G 0.26 deleterious(0) probably_damaging(0.937) TCGA-BR-4257-01 10 18087537 18087537 G C TMEM236 3'UTR 0.24 TCGA-BR-4257-01 10 18112341 18112341 G A MRC1 Missense_Mutation p.G120D 0.50 deleterious(0.02) probably_damaging(0.999) TCGA-BR-4257-01 10 30336525 30336525 G A KIAA1462 Missense_Mutation p.R73C 0.33 deleterious(0.02) benign(0.055) TCGA-BR-4257-01 10 30748255 30748255 A G MAP3K8 Silent p.E366E 0.27 TCGA-BR-4257-01 10 3180476 3180476 C A PITRM1 Nonsense_Mutation p.E992* 0.27 TCGA-BR-4257-01 10 32097965 32097965 A G ARHGAP12 Silent p.P740P 0.30 TCGA-BR-4257-01 10 34558704 34558704 A G PARD3 Silent p.S1103S 0.34 TCGA-BR-4257-01 10 43696165 43696165 C T RASGEF1A Missense_Mutation p.V211M 0.62 deleterious(0.05) benign(0.15) TCGA-BR-4257-01 10 45488730 45488730 C T RASSF4 Missense_Mutation p.R307C 0.33 deleterious(0) probably_damaging(0.998) TCGA-BR-4257-01 10 45798863 45798863 A - OR13A1 3'UTR 0.22 TCGA-BR-4257-01 10 46248126 46248126 A G FAM21C Missense_Mutation p.K365R 0.31 tolerated(0.28) benign(0.006) TCGA-BR-4257-01 10 4889684 4889684 A - AKR1E2 Frame_Shift_Del p.N310Ifs*9 0.28 TCGA-BR-4257-01 10 5498109 5498109 C T NET1 Silent p.N419N 0.17 TCGA-BR-4257-01 10 61868760 61868760 G A ANK3 Missense_Mutation p.R1001C 0.20 probably_damaging(0.998) TCGA-BR-4257-01 10 69750905 69750906 - A HERC4 Frame_Shift_Ins p.L441Ffs*4 0.15 TCGA-BR-4257-01 10 70450958 70450958 C T TET1 Missense_Mutation p.P1933L 0.23 deleterious(0.01) benign(0.196) TCGA-BR-4257-01 10 73544820 73544820 C T CDH23 Missense_Mutation p.A1897V 0.30 tolerated(0.09) benign(0.06) TCGA-BR-4257-01 10 74114622 74114622 T C DNAJB12 Missense_Mutation p.I46V 0.27 tolerated(0.17) benign(0.054) TCGA-BR-4257-01 10 74894376 74894376 C T ECD Missense_Mutation p.D667N 0.11 deleterious(0) possibly_damaging(0.907) TCGA-BR-4257-01 10 75456870 75456870 C A AGAP5 Missense_Mutation p.R92M 0.28 deleterious_low_confidence(0.02) possibly_damaging(0.507) TCGA-BR-4257-01 10 75523277 75523277 C A SEC24C Missense_Mutation p.N339K 0.23 tolerated(0.48) benign(0.037) TCGA-BR-4257-01 10 75567575 75567575 A - NDST2 Frame_Shift_Del p.L191Yfs*12 0.21 TCGA-BR-4257-01 10 78799284 78799284 A G KCNMA1 Splice_Site p.X620_splice 0.17 TCGA-BR-4257-01 10 78844406 78844406 C T KCNMA1 Silent p.S504S 0.33 TCGA-BR-4257-01 10 8006409 8006409 T C TAF3 Silent p.P312P 0.33 TCGA-BR-4257-01 10 81053157 81053157 A C ZMIZ1 Missense_Mutation p.Y326S 0.21 benign(0.421) TCGA-BR-4257-01 10 88950340 88950340 T - FAM35A Frame_Shift_Del p.F804Lfs*3 0.23 TCGA-BR-4257-01 10 890939 890939 T - LARP4B Frame_Shift_Del p.T163Hfs*47 0.19 TCGA-BR-4257-01 10 89717770 89717770 A - PTEN Frame_Shift_Del p.K267Rfs*9 0.39 TCGA-BR-4257-01 10 90682146 90682146 A - STAMBPL1 Frame_Shift_Del p.K405Rfs*21 0.32 TCGA-BR-4257-01 10 94733809 94733809 G T EXOC6 Splice_Site p.X592_splice 0.43 TCGA-BR-4257-01 10 95079681 95079681 A G MYOF Missense_Mutation p.V1849A 0.21 deleterious(0) possibly_damaging(0.816) TCGA-BR-4257-01 10 97918856 97918856 A - ZNF518A RNA 0.31 TCGA-BR-4257-01 10 98105764 98105764 A G OPALIN Silent p.R120R 0.21 TCGA-BR-4257-01 11 102220626 102220626 C T BIRC2 Missense_Mutation p.S14L 0.18 tolerated_low_confidence(0.67) benign(0) TCGA-BR-4257-01 11 103907911 103907911 G A DDI1 Missense_Mutation p.A121T 0.39 tolerated(0.6) benign(0.001) TCGA-BR-4257-01 11 105880356 105880356 A - MSANTD4 Frame_Shift_Del p.L315* 0.19 TCGA-BR-4257-01 11 105924490 105924490 T C KBTBD3 Missense_Mutation p.Q309R 0.30 tolerated(0.93) benign(0.004) TCGA-BR-4257-01 11 107925673 107925673 C T CUL5 Silent p.S257S 0.30 TCGA-BR-4257-01 11 108117798 108117798 C T ATM Missense_Mutation p.R337C 0.19 deleterious(0) probably_damaging(0.999) TCGA-BR-4257-01 11 111414815 111414815 T C LAYN Missense_Mutation p.F93L 0.12 tolerated(0.4) benign(0.123) TCGA-BR-4257-01 11 111753154 111753154 C T C11orf1 Silent p.G36G 0.34 TCGA-BR-4257-01 11 113650551 113650551 G - CLDN25 Frame_Shift_Del p.L14Yfs*27 0.42 TCGA-BR-4257-01 11 113802574 113802574 T C HTR3B Missense_Mutation p.I118T 0.44 deleterious(0) probably_damaging(0.995) TCGA-BR-4257-01 11 114453246 114453246 G A NXPE4 Silent p.G198G 0.15 TCGA-BR-4257-01 11 116744643 116744643 T C SIK3 Silent p.Q461Q 0.19 TCGA-BR-4257-01 11 117073731 117073731 T C TAGLN Translation_Start_Site p.M1? 0.31 deleterious(0) probably_damaging(0.988) TCGA-BR-4257-01 11 118399499 118399499 C T TTC36 Silent p.D100D 0.26 TCGA-BR-4257-01 11 118533631 118533631 C T TREH Missense_Mutation p.A128T 0.67 deleterious(0) possibly_damaging(0.904) TCGA-BR-4257-01 11 118982005 118982005 G T C2CD2L Missense_Mutation p.Q277H 0.16 tolerated(0.12) benign(0.003) TCGA-BR-4257-01 11 120096472 120096472 A G OAF Missense_Mutation p.I112V 0.35 deleterious(0.02) probably_damaging(0.995) TCGA-BR-4257-01 11 120690602 120690602 G A GRIK4 Missense_Mutation p.A162T 0.40 tolerated(0.18) benign(0.041) TCGA-BR-4257-01 11 122659945 122659945 C T UBASH3B Silent p.T303T 0.38 TCGA-BR-4257-01 11 122928610 122928610 T C HSPA8 Silent p.E591E 0.22 TCGA-BR-4257-01 11 12315879 12315879 A - MICALCL Frame_Shift_Del p.T302Lfs*76 0.26 TCGA-BR-4257-01 11 123900482 123900482 T A OR10G8 Silent p.S51S 0.14 TCGA-BR-4257-01 11 124413190 124413190 G A OR8B12 Missense_Mutation p.R121C 0.55 deleterious_low_confidence(0.01) benign(0.12) TCGA-BR-4257-01 11 129754692 129754692 C T NFRKB Silent p.A255A 0.25 TCGA-BR-4257-01 11 134118753 134118753 T - THYN1 Frame_Shift_Del p.N194Ifs*15 0.18 TCGA-BR-4257-01 11 13435077 13435077 T C BTBD10 Missense_Mutation p.S270G 0.43 tolerated(0.44) benign(0.004) TCGA-BR-4257-01 11 13729476 13729476 C T FAR1 Missense_Mutation p.T132M 0.37 deleterious(0) probably_damaging(0.966) TCGA-BR-4257-01 11 18028253 18028253 C T SERGEF Silent p.G79G 0.10 TCGA-BR-4257-01 11 19970272 19970272 C T NAV2 Missense_Mutation p.T787M 0.16 deleterious(0) probably_damaging(0.999) TCGA-BR-4257-01 11 20385903 20385903 G A HTATIP2 Silent p.E74E 0.20 TCGA-BR-4257-01 11 211202 211202 C T RIC8A Silent p.H274H 0.28 TCGA-BR-4257-01 11 27401816 27401817 AC - LGR4 Splice_Site p.X324_splice 0.13 TCGA-BR-4257-01 11 31812317 31812317 G - PAX6 Frame_Shift_Del p.P389Hfs*7 0.40 TCGA-BR-4257-01 11 32997895 32997895 A - QSER1 Frame_Shift_Del p.N1697Mfs*4 0.69 TCGA-BR-4257-01 11 33772171 33772171 C T FBXO3 Silent p.G282G 0.44 TCGA-BR-4257-01 11 36595732 36595732 G A RAG1 Missense_Mutation p.C293Y 0.43 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BR-4257-01 11 3721906 3721906 C T NUP98 Missense_Mutation p.V1226I 0.22 tolerated(0.07) probably_damaging(0.994) TCGA-BR-4257-01 11 372694 372695 - G B4GALNT4 Frame_Shift_Ins p.A99Gfs*29 0.41 TCGA-BR-4257-01 11 43356827 43356827 G T API5 Splice_Site p.X427_splice 0.40 TCGA-BR-4257-01 11 44289061 44289061 C T ALX4 Missense_Mutation p.A297T 0.15 tolerated(0.44) benign(0.112) TCGA-BR-4257-01 11 44297062 44297062 C T ALX4 Missense_Mutation p.A205T 0.26 tolerated(0.2) benign(0) TCGA-BR-4257-01 11 46727164 46727164 C A ZNF408 Silent p.P638P 0.32 TCGA-BR-4257-01 11 47264672 47264672 C T ACP2 Missense_Mutation p.D287N 0.43 deleterious(0.02) probably_damaging(0.931) TCGA-BR-4257-01 11 47307054 47307054 G A MADD Missense_Mutation p.A822T 0.24 deleterious_low_confidence(0.01) benign(0.379) TCGA-BR-4257-01 11 47599015 47599015 A G KBTBD4 Silent p.N195N 0.20 TCGA-BR-4257-01 11 47859139 47859139 A G NUP160 Missense_Mutation p.V262A 0.19 deleterious(0) possibly_damaging(0.586) TCGA-BR-4257-01 11 48161113 48161113 C A PTPRJ Missense_Mutation p.P743H 0.21 deleterious(0) probably_damaging(1) TCGA-BR-4257-01 11 48327840 48327840 G A OR4S1 Silent p.Q22Q 0.20 TCGA-BR-4257-01 11 5068158 5068158 G A OR52J3 Missense_Mutation p.A135T 0.24 tolerated(1) benign(0) TCGA-BR-4257-01 11 51515845 51515845 T C OR4C46 Silent p.T188T 0.38 TCGA-BR-4257-01 11 5344589 5344589 T C OR51B2 Silent p.%3D 0.23 TCGA-BR-4257-01 11 55065031 55065032 - T TRIM51HP RNA 0.36 TCGA-BR-4257-01 11 55406142 55406142 T - OR4P4 Frame_Shift_Del p.F105Lfs*4 0.24 TCGA-BR-4257-01 11 55927697 55927697 C T OR8K5 Missense_Mutation p.V33I 0.36 tolerated_low_confidence(1) benign(0) TCGA-BR-4257-01 11 56000210 56000210 C A OR5T2 Missense_Mutation p.C151F 0.44 deleterious(0.03) benign(0.347) TCGA-BR-4257-01 11 57117371 57117371 C T P2RX3 Missense_Mutation p.T235M 0.28 deleterious(0.01) possibly_damaging(0.871) TCGA-BR-4257-01 11 57146997 57146997 C T PRG3 Silent p.V115V 0.05 TCGA-BR-4257-01 11 57296267 57296267 C A TIMM10 Missense_Mutation p.G66C 0.15 deleterious(0) probably_damaging(1) TCGA-BR-4257-01 11 5730360 5730360 C T TRIM22 Missense_Mutation p.R327C 0.38 tolerated(0.21) benign(0.001) TCGA-BR-4257-01 11 5862840 5862840 A G OR52E6 Silent p.F96F 0.23 TCGA-BR-4257-01 11 58979300 58979300 A G MPEG1 Missense_Mutation p.Y347H 0.21 tolerated(0.36) benign(0.02) TCGA-BR-4257-01 11 6023400 6023400 C T OR56A4 Missense_Mutation p.V327I 0.36 tolerated(1) benign(0.015) TCGA-BR-4257-01 11 60296882 60296882 T G MS4A13 Silent p.G117G 0.19 TCGA-BR-4257-01 11 60558552 60558553 - G MS4A10 Frame_Shift_Ins p.A99Gfs*19 0.19 TCGA-BR-4257-01 11 62649529 62649529 A - SLC3A2 Frame_Shift_Del p.K301Rfs*31 0.35 TCGA-BR-4257-01 11 63656411 63656411 T C MARK2 Intron 0.28 TCGA-BR-4257-01 11 64323478 64323478 T C SLC22A11 Missense_Mutation p.F3L 0.44 deleterious(0) probably_damaging(0.999) TCGA-BR-4257-01 11 65298235 65298235 G A SCYL1 Missense_Mutation p.V329I 0.23 tolerated(0.22) benign(0.025) TCGA-BR-4257-01 11 65618601 65618601 C T SNX32 Missense_Mutation p.R227W 0.22 deleterious(0) benign(0.005) TCGA-BR-4257-01 11 66039887 66039888 - G RAB1B Frame_Shift_Ins p.A81Gfs*9 0.42 TCGA-BR-4257-01 11 68542897 68542897 C T CPT1A Missense_Mutation p.V488I 0.11 tolerated(0.24) benign(0.042) TCGA-BR-4257-01 11 69995855 69995855 G A ANO1 Missense_Mutation p.R433Q 0.29 deleterious(0.04) probably_damaging(0.975) TCGA-BR-4257-01 11 70013392 70013393 - C ANO1 Frame_Shift_Ins p.D702* 0.33 TCGA-BR-4257-01 11 70017068 70017068 T G ANO1 Missense_Mutation p.I758S 0.36 deleterious(0) probably_damaging(0.985) TCGA-BR-4257-01 11 75776823 75776823 T G UVRAG Missense_Mutation p.N432K 0.17 deleterious(0.02) probably_damaging(0.951) TCGA-BR-4257-01 11 7694000 7694000 C T CYB5R2 Silent p.P19P 0.19 TCGA-BR-4257-01 11 77633436 77633436 A - INTS4 Frame_Shift_Del p.F532Lfs*56 0.15 TCGA-BR-4257-01 11 82984691 82984691 T - CCDC90B Frame_Shift_Del p.K198Rfs*23 0.28 TCGA-BR-4257-01 11 92088561 92088561 G A FAT3 Missense_Mutation p.D1095N 0.29 benign(0.295) TCGA-BR-4257-01 11 92533874 92533874 A G FAT3 Silent p.E2565E 0.22 TCGA-BR-4257-01 11 94340675 94340675 G A PIWIL4 Missense_Mutation p.C570Y 0.31 tolerated(0.18) benign(0.008) TCGA-BR-4257-01 11 94696586 94696586 T A CWC15 Missense_Mutation p.E217D 0.64 tolerated(0.52) probably_damaging(0.969) TCGA-BR-4257-01 11 94731303 94731303 A - KDM4D Frame_Shift_Del p.N257Mfs*8 0.27 TCGA-BR-4257-01 12 100957089 100957089 T C NR1H4 Missense_Mutation p.V428A 0.31 deleterious(0.04) benign(0.144) TCGA-BR-4257-01 12 101005888 101005888 T C GAS2L3 Silent p.D138D 0.26 TCGA-BR-4257-01 12 102158446 102158446 T - GNPTAB Frame_Shift_Del p.N750Ifs*4 0.27 TCGA-BR-4257-01 12 106632747 106632747 T - CKAP4 3'UTR 0.21 TCGA-BR-4257-01 12 107254141 107254141 T G RIC8B Missense_Mutation p.S468A 0.33 deleterious(0) probably_damaging(0.996) TCGA-BR-4257-01 12 107371383 107371383 T - MTERFD3 Frame_Shift_Del p.V371* 0.24 TCGA-BR-4257-01 12 108958107 108958107 C T ISCU Missense_Mutation p.S56F 0.26 deleterious_low_confidence(0) probably_damaging(0.948) TCGA-BR-4257-01 12 110226433 110226433 G A TRPV4 Silent p.C660C 0.26 TCGA-BR-4257-01 12 110933822 110933822 C T VPS29 Missense_Mutation p.D68N 0.24 deleterious(0.02) benign(0.048) TCGA-BR-4257-01 12 113824823 113824823 C - PLBD2 Frame_Shift_Del p.R458Gfs*21 0.23 TCGA-BR-4257-01 12 113825620 113825620 C A PLBD2 Missense_Mutation p.A504D 0.25 deleterious(0) probably_damaging(1) TCGA-BR-4257-01 12 119773072 119773072 G C CCDC60 Splice_Site p.X30_splice 0.40 TCGA-BR-4257-01 12 121154782 121154782 A G UNC119B Missense_Mutation p.I194V 0.20 deleterious(0) probably_damaging(0.97) TCGA-BR-4257-01 12 122691078 122691078 C T B3GNT4 Missense_Mutation p.R94C 0.25 deleterious(0) probably_damaging(1) TCGA-BR-4257-01 12 123087620 123087620 A - KNTC1 Frame_Shift_Del p.K1646Nfs*2 0.28 TCGA-BR-4257-01 12 123187233 123187233 G A HCAR2 Missense_Mutation p.P200S 0.30 tolerated(0.07) probably_damaging(0.951) TCGA-BR-4257-01 12 123810084 123810084 G A SBNO1 Silent p.G646G 0.34 TCGA-BR-4257-01 12 124092063 124092063 G A DDX55 Missense_Mutation p.E111K 0.30 tolerated(0.39) benign(0.001) TCGA-BR-4257-01 12 133197638 133197638 G A P2RX2 Missense_Mutation p.A276T 0.21 tolerated(0.07) possibly_damaging(0.637) TCGA-BR-4257-01 12 14664529 14664529 G A PLBD1 Silent p.L321L 0.22 TCGA-BR-4257-01 12 14993873 14993873 G T ART4 Missense_Mutation p.A120D 0.30 deleterious(0) probably_damaging(0.972) TCGA-BR-4257-01 12 19427544 19427545 - A PLEKHA5 Frame_Shift_Ins p.N316Kfs*8 0.19 TCGA-BR-4257-01 12 22208418 22208418 A G CMAS Missense_Mutation p.T145A 0.15 deleterious(0) probably_damaging(0.995) TCGA-BR-4257-01 12 25398281 25398281 C T KRAS Missense_Mutation p.G13D 0.31 deleterious(0.04) possibly_damaging(0.506) TCGA-BR-4257-01 12 39745580 39745580 T - KIF21A Frame_Shift_Del p.R558Gfs*42 0.17 TCGA-BR-4257-01 12 44191543 44191543 A T TWF1 Missense_Mutation p.L200M 0.27 tolerated(0.11) possibly_damaging(0.564) TCGA-BR-4257-01 12 44915909 44915909 T C NELL2 Silent p.T733T 0.17 TCGA-BR-4257-01 12 49981464 49981464 T - FAM186B Frame_Shift_Del p.K869Rfs*11 0.19 TCGA-BR-4257-01 12 50498517 50498517 A G GPD1 Missense_Mutation p.K68E 0.25 tolerated(0.06) benign(0.035) TCGA-BR-4257-01 12 52094954 52094954 C T SCN8A Silent p.L319L 0.31 TCGA-BR-4257-01 12 56143376 56143376 C T GDF11 Missense_Mutation p.R312C 0.31 deleterious(0) probably_damaging(0.989) TCGA-BR-4257-01 12 56481660 56481660 C T ERBB3 Missense_Mutation p.A232V 0.16 deleterious(0) probably_damaging(1) TCGA-BR-4257-01 12 56563427 56563427 C A SMARCC2 Missense_Mutation p.K836N 0.29 tolerated(0.14) benign(0.403) TCGA-BR-4257-01 12 56749230 56749230 C T STAT2 Missense_Mutation p.M156I 0.27 tolerated(0.36) benign(0.034) TCGA-BR-4257-01 12 57849901 57849901 T C INHBE Missense_Mutation p.L108P 0.25 tolerated(0.35) benign(0.269) TCGA-BR-4257-01 12 57864396 57864396 G A GLI1 Missense_Mutation p.E625K 0.14 tolerated(0.1) probably_damaging(0.993) TCGA-BR-4257-01 12 57920381 57920381 C A MBD6 Missense_Mutation p.P485T 0.24 deleterious_low_confidence(0) unknown(0) TCGA-BR-4257-01 12 58007438 58007438 C T ARHGEF25 Intron 0.39 TCGA-BR-4257-01 12 58166907 58166907 G A METTL21B Silent p.L95L 0.26 TCGA-BR-4257-01 12 64491077 64491077 G A SRGAP1 Missense_Mutation p.V579I 0.33 deleterious(0) probably_damaging(0.978) TCGA-BR-4257-01 12 65141513 65141513 A - GNS Frame_Shift_Del p.F146Lfs*6 0.22 TCGA-BR-4257-01 12 66539677 66539677 A - TMBIM4 Frame_Shift_Del p.F136Lfs*3 0.33 TCGA-BR-4257-01 12 66547166 66547166 T C TMBIM4 Missense_Mutation p.T54A 0.22 tolerated(1) benign(0.001) TCGA-BR-4257-01 12 6687040 6687040 A G CHD4 Missense_Mutation p.Y1758H 0.20 deleterious(0) probably_damaging(0.996) TCGA-BR-4257-01 12 6749557 6749557 G T ACRBP Silent p.P403P 0.27 TCGA-BR-4257-01 12 6964649 6964649 G A USP5 Missense_Mutation p.G66S 0.23 deleterious(0.01) probably_damaging(0.998) TCGA-BR-4257-01 12 69784045 69784045 A - YEATS4 Frame_Shift_Del p.N213Mfs*20 0.23 TCGA-BR-4257-01 12 7077645 7077645 T C PHB2 Missense_Mutation p.I136V 0.28 deleterious(0.02) possibly_damaging(0.561) TCGA-BR-4257-01 12 71139707 71139707 T C PTPRR Missense_Mutation p.N300D 0.20 tolerated(0.2) benign(0.002) TCGA-BR-4257-01 12 71977612 71977612 G A LGR5 Missense_Mutation p.V608I 0.30 tolerated(0.52) benign(0.038) TCGA-BR-4257-01 12 72667257 72667257 G A TRHDE Silent p.L233L 0.34 TCGA-BR-4257-01 12 76449858 76449858 C T NAP1L1 Nonsense_Mutation p.W171* 0.34 TCGA-BR-4257-01 12 81101543 81101551 GGATGGGGA TGAGTGGGGG MYF6 Frame_Shift_Ins p.L15Ffs*24 0.10 TCGA-BR-4257-01 12 81110900 81110900 T A MYF5 Missense_Mutation p.C20S 0.35 deleterious(0.01) benign(0.014) TCGA-BR-4257-01 12 8281918 8281918 T C CLEC4A Silent p.H86H 0.21 TCGA-BR-4257-01 12 88472895 88472895 C T CEP290 Missense_Mutation p.V1780I 0.24 benign(0.022) TCGA-BR-4257-01 12 95442864 95442864 C T NR2C1 Missense_Mutation p.D371N 0.24 deleterious(0.01) benign(0.015) TCGA-BR-4257-01 12 96292234 96292234 C A CCDC38 Missense_Mutation p.Q181H 0.23 deleterious(0.02) probably_damaging(0.934) TCGA-BR-4257-01 12 98928134 98928134 A - TMPO 3'UTR 0.18 TCGA-BR-4257-01 12 99076985 99076985 G A APAF1 Missense_Mutation p.C704Y 0.30 tolerated(1) possibly_damaging(0.844) TCGA-BR-4257-01 13 103257246 103257246 T G TPP2 Missense_Mutation p.V90G 0.28 deleterious(0) benign(0.004) TCGA-BR-4257-01 13 108862142 108862142 G - LIG4 Frame_Shift_Del p.P492Lfs*21 0.14 TCGA-BR-4257-01 13 110835372 110835372 C T COL4A1 Missense_Mutation p.G688D 0.27 benign(0.006) TCGA-BR-4257-01 13 111117854 111117854 G A COL4A2 Missense_Mutation p.G627S 0.21 probably_damaging(0.995) TCGA-BR-4257-01 13 111926266 111926266 T C ARHGEF7 Silent p.P414P 0.24 TCGA-BR-4257-01 13 114526521 114526521 G A GAS6 Missense_Mutation p.R494W 0.23 deleterious(0.01) probably_damaging(0.971) TCGA-BR-4257-01 13 20242596 20242596 G A MPHOSPH8 Missense_Mutation p.A752T 0.22 deleterious(0.02) probably_damaging(0.998) TCGA-BR-4257-01 13 20797345 20797345 G A GJB6 Missense_Mutation p.A92V 0.12 tolerated(1) benign(0.175) TCGA-BR-4257-01 13 22070218 22070218 T C MICU2 Missense_Mutation p.S339G 0.19 deleterious(0.02) benign(0.071) TCGA-BR-4257-01 13 23824814 23824814 G A SGCG Missense_Mutation p.A115T 0.28 tolerated(0.12) probably_damaging(0.912) TCGA-BR-4257-01 13 24890284 24890284 C T C1QTNF9 Missense_Mutation p.A48V 0.15 tolerated(0.29) benign(0.015) TCGA-BR-4257-01 13 25262595 25262595 G A ATP12A Missense_Mutation p.A123T 0.22 deleterious(0.01) benign(0.421) TCGA-BR-4257-01 13 28367816 28367816 C T GSX1 Missense_Mutation p.R176C 0.19 deleterious(0) probably_damaging(1) TCGA-BR-4257-01 13 28834653 28834653 G A PAN3 Missense_Mutation p.A440T 0.07 tolerated(0.16) possibly_damaging(0.652) TCGA-BR-4257-01 13 32366011 32366011 G A RXFP2 Missense_Mutation p.G405D 0.29 deleterious(0.01) probably_damaging(1) TCGA-BR-4257-01 13 32527044 32527044 G A EEF1DP3 RNA 0.15 TCGA-BR-4257-01 13 36909438 36909438 T C SPG20 Missense_Mutation p.Q177R 0.26 deleterious(0.01) possibly_damaging(0.735) TCGA-BR-4257-01 13 37453862 37453862 C T SMAD9 5'UTR 0.39 TCGA-BR-4257-01 13 39587850 39587850 T C PROSER1 Silent p.S513S 0.21 TCGA-BR-4257-01 13 41943312 41943312 C T NAA16 Missense_Mutation p.H614Y 0.25 deleterious(0.02) benign(0.003) TCGA-BR-4257-01 13 45911676 45911676 T C TPT1 Intron 0.25 TCGA-BR-4257-01 13 45914128 45914128 C A TPT1 Splice_Site p.X98_splice 0.17 TCGA-BR-4257-01 13 49906086 49906086 A - CAB39L Frame_Shift_Del p.F277Lfs*19 0.25 TCGA-BR-4257-01 13 50279819 50279819 T - KPNA3 Frame_Shift_Del p.N437Tfs*3 0.22 TCGA-BR-4257-01 13 52639595 52639595 C T NEK5 Missense_Mutation p.R692H 0.42 tolerated(0.32) benign(0) TCGA-BR-4257-01 13 52718829 52718829 G - NEK3 Frame_Shift_Del p.E268Rfs*11 0.25 TCGA-BR-4257-01 13 53239778 53239778 C T SUGT1 Silent p.D175D 0.28 TCGA-BR-4257-01 13 58208795 58208795 G A PCDH17 Silent p.S705S 0.15 TCGA-BR-4257-01 13 60413550 60413550 G A DIAPH3 Nonsense_Mutation p.Q924* 0.20 TCGA-BR-4257-01 13 60737769 60737769 A G DIAPH3 Silent p.P44P 0.38 TCGA-BR-4257-01 13 67802393 67802393 G A PCDH9 Silent p.A60A 0.29 TCGA-BR-4257-01 13 73327858 73327858 G T BORA Nonsense_Mutation p.G505* 0.14 TCGA-BR-4257-01 13 77657276 77657276 C T MYCBP2 Missense_Mutation p.G3605R 0.28 probably_damaging(0.999) TCGA-BR-4257-01 13 86370288 86370288 A T SLITRK6 Missense_Mutation p.I119N 0.22 deleterious(0) probably_damaging(0.999) TCGA-BR-4257-01 13 93518632 93518632 G A GPC5 Silent p.A553A 0.27 TCGA-BR-4257-01 13 98116785 98116785 C T RAP2A 3'UTR 0.12 TCGA-BR-4257-01 14 102695911 102695911 C T MOK Silent p.S355S 0.28 TCGA-BR-4257-01 14 103601572 103601572 G A TNFAIP2 Missense_Mutation p.A614T 0.18 deleterious(0.01) probably_damaging(0.992) TCGA-BR-4257-01 14 104482383 104482383 G A TDRD9 Silent p.A763A 0.33 TCGA-BR-4257-01 14 105833659 105833659 C A PACS2 Missense_Mutation p.P178H 0.20 deleterious(0) probably_damaging(0.999) TCGA-BR-4257-01 14 20853225 20853225 A G TEP1 Missense_Mutation p.V1009A 0.34 tolerated(0.13) benign(0.437) TCGA-BR-4257-01 14 20871992 20871992 G A TEP1 Missense_Mutation p.R362C 0.22 deleterious(0) probably_damaging(1) TCGA-BR-4257-01 14 21679537 21679537 T - HNRNPC Intron 0.17 TCGA-BR-4257-01 14 21993076 21993076 A G SALL2 Silent p.S262S 0.14 TCGA-BR-4257-01 14 23374162 23374162 T A RBM23 Silent p.P262P 0.28 TCGA-BR-4257-01 14 23902741 23902741 C A MYH7 Missense_Mutation p.K67N 0.33 deleterious(0.02) benign(0.026) TCGA-BR-4257-01 14 24572963 24572963 A G PCK2 Silent p.T571T 0.39 TCGA-BR-4257-01 14 24659446 24659446 G A TM9SF1 Intron 0.38 TCGA-BR-4257-01 14 29237047 29237047 G A FOXG1 Missense_Mutation p.A188T 0.20 deleterious(0) probably_damaging(0.999) TCGA-BR-4257-01 14 35564337 35564337 G A PPP2R3C Missense_Mutation p.L298F 0.18 deleterious(0) probably_damaging(0.997) TCGA-BR-4257-01 14 38678777 38678777 C A SSTR1 Silent p.I61I 0.31 TCGA-BR-4257-01 14 50769634 50769634 T - L2HGDH Frame_Shift_Del p.K81Rfs*5 0.18 TCGA-BR-4257-01 14 50846843 50846843 C A CDKL1 Intron 0.24 TCGA-BR-4257-01 14 51192775 51192775 C T NIN Missense_Mutation p.E2030K 0.44 deleterious(0.04) possibly_damaging(0.671) TCGA-BR-4257-01 14 51219236 51219236 C T NIN Silent p.Q1650Q 0.27 TCGA-BR-4257-01 14 52466489 52466489 A G C14orf166 Missense_Mutation p.H146R 0.24 deleterious(0.04) possibly_damaging(0.521) TCGA-BR-4257-01 14 54417278 54417278 C T BMP4 Silent p.G233G 0.18 TCGA-BR-4257-01 14 54418933 54418933 G T BMP4 Missense_Mutation p.P3H 0.36 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-BR-4257-01 14 57960431 57960431 C A C14orf105 Translation_Start_Site p.M1? 0.35 deleterious(0) probably_damaging(0.997) TCGA-BR-4257-01 14 60591468 60591468 A G PCNXL4 Missense_Mutation p.Q626R 0.26 tolerated(0.23) benign(0.003) TCGA-BR-4257-01 14 62016477 62016477 G T PRKCH Missense_Mutation p.E660D 0.35 tolerated(0.69) benign(0.003) TCGA-BR-4257-01 14 63863413 63863413 C T PPP2R5E Missense_Mutation p.E191K 0.28 deleterious(0) probably_damaging(0.995) TCGA-BR-4257-01 14 64746715 64746715 A - ESR2 Frame_Shift_Del p.F173Lfs*43 0.25 TCGA-BR-4257-01 14 64953932 64953933 AC - ZBTB25 Frame_Shift_Del p.C339* 0.23 TCGA-BR-4257-01 14 65007553 65007553 C T HSPA2 5'UTR 0.30 TCGA-BR-4257-01 14 67940214 67940214 G A TMEM229B Missense_Mutation p.R143C 0.62 deleterious(0.01) probably_damaging(0.95) TCGA-BR-4257-01 14 70855230 70855230 G A SYNJ2BP Missense_Mutation p.A53V 0.17 deleterious(0.03) probably_damaging(1) TCGA-BR-4257-01 14 71455319 71455319 C T PCNX Missense_Mutation p.R783C 0.32 deleterious(0.04) probably_damaging(0.998) TCGA-BR-4257-01 14 72055785 72055785 G A SIPA1L1 Missense_Mutation p.S399N 0.31 tolerated(0.3) benign(0) TCGA-BR-4257-01 14 73566386 73566386 T A RBM25 Missense_Mutation p.N265K 0.30 possibly_damaging(0.791) TCGA-BR-4257-01 14 74203800 74203800 G A ELMSAN1 Silent p.D550D 0.26 TCGA-BR-4257-01 14 75139565 75139565 A G AREL1 Missense_Mutation p.L464P 0.18 deleterious(0) probably_damaging(0.997) TCGA-BR-4257-01 14 86087980 86087980 G A FLRT2 Missense_Mutation p.R41H 0.18 deleterious(0) probably_damaging(1) TCGA-BR-4257-01 14 91780228 91780228 G A CCDC88C Silent p.N644N 0.35 TCGA-BR-4257-01 14 92406952 92406952 G A FBLN5 Silent p.C27C 0.26 TCGA-BR-4257-01 14 93176196 93176196 T G LGMN Missense_Mutation p.M281L 0.26 tolerated(0.78) benign(0.008) TCGA-BR-4257-01 14 94770716 94770716 C A SERPINA6 3'UTR 0.24 TCGA-BR-4257-01 14 94780499 94780499 A G SERPINA6 Missense_Mutation p.W163R 0.16 tolerated(0.66) possibly_damaging(0.472) TCGA-BR-4257-01 14 99871571 99871571 G T SETD3 Silent p.A354A 0.32 TCGA-BR-4257-01 15 102182749 102182749 G A TM2D3 Missense_Mutation p.T226M 0.37 deleterious(0) probably_damaging(0.996) TCGA-BR-4257-01 15 102224299 102224299 G A TARSL2 Silent p.H543H 0.33 TCGA-BR-4257-01 15 22332504 22332505 - T RP11-69H14.6 RNA 0.10 TCGA-BR-4257-01 15 25351684 25351684 A - SNORD116-29 RNA 0.22 TCGA-BR-4257-01 15 25953366 25953366 C T ATP10A Missense_Mutation p.R809H 0.19 deleterious(0) probably_damaging(0.998) TCGA-BR-4257-01 15 28200305 28200305 T - OCA2 Frame_Shift_Del p.K614Sfs*14 0.29 TCGA-BR-4257-01 15 28421604 28421604 G A HERC2 Missense_Mutation p.A3219V 0.29 probably_damaging(1) TCGA-BR-4257-01 15 28443624 28443626 AGA - HERC2 In_Frame_Del p.S2637del 0.25 TCGA-BR-4257-01 15 31222763 31222763 G - FAN1 Frame_Shift_Del p.G937Afs*52 0.20 TCGA-BR-4257-01 15 31819407 31819407 G A OTUD7A Nonsense_Mutation p.Q253* 0.31 TCGA-BR-4257-01 15 34159951 34159951 G C AVEN Missense_Mutation p.P240A 0.22 deleterious(0.03) benign(0.128) TCGA-BR-4257-01 15 34648763 34648763 C T NUTM1 Nonsense_Mutation p.Q824* 0.25 TCGA-BR-4257-01 15 35529799 35529799 G A ANP32AP1 RNA 0.16 TCGA-BR-4257-01 15 40326639 40326639 A - EIF2AK4 Frame_Shift_Del p.K1631Rfs*48 0.29 TCGA-BR-4257-01 15 40758201 40758201 C - BAHD1 Frame_Shift_Del p.S741Lfs*58 0.36 TCGA-BR-4257-01 15 41772868 41772868 C T RTF1 Nonsense_Mutation p.R706* 0.12 TCGA-BR-4257-01 15 41988756 41988756 T C MGA Silent p.N516N 0.32 TCGA-BR-4257-01 15 42742590 42742591 - T ZNF106 Frame_Shift_Ins p.I604Nfs*20 0.26 TCGA-BR-4257-01 15 43661966 43661966 G A ZSCAN29 Missense_Mutation p.P49L 0.23 deleterious(0) probably_damaging(1) TCGA-BR-4257-01 15 48741074 48741074 T G FBN1 Missense_Mutation p.Q1854H 0.26 possibly_damaging(0.549) TCGA-BR-4257-01 15 52521497 52521497 T - MYO5C Frame_Shift_Del p.S1014Vfs*4 0.23 TCGA-BR-4257-01 15 53081051 53081051 C T ONECUT1 Missense_Mutation p.R344Q 0.26 deleterious(0) probably_damaging(1) TCGA-BR-4257-01 15 54527275 54527276 - A UNC13C Frame_Shift_Ins p.T1043Nfs*26 0.17 TCGA-BR-4257-01 15 57545469 57545469 A G TCF12 Missense_Mutation p.M424V 0.30 tolerated(0.19) probably_damaging(0.986) TCGA-BR-4257-01 15 58285256 58285256 G A ALDH1A2 Silent p.L191L 0.17 TCGA-BR-4257-01 15 62994288 62994288 C T TLN2 Silent p.A598A 0.30 TCGA-BR-4257-01 15 63598041 63598041 C T APH1B 3'UTR 0.43 TCGA-BR-4257-01 15 64967247 64967247 A - ZNF609 Frame_Shift_Del p.K734Rfs*12 0.26 TCGA-BR-4257-01 15 65677433 65677433 G T IGDCC4 Missense_Mutation p.S1067R 0.50 tolerated(0.07) benign(0.094) TCGA-BR-4257-01 15 65946296 65946296 C T SLC24A1 Missense_Mutation p.A1060V 0.23 possibly_damaging(0.884) TCGA-BR-4257-01 15 68617468 68617468 C T ITGA11 Splice_Site p.X774_splice 0.12 TCGA-BR-4257-01 15 69329504 69329504 G A NOX5 Missense_Mutation p.R442H 0.34 tolerated(0.09) benign(0.008) TCGA-BR-4257-01 15 69548140 69548140 C T GLCE 5'UTR 0.28 TCGA-BR-4257-01 15 71193355 71193355 C T LRRC49 Silent p.S101S 0.31 TCGA-BR-4257-01 15 73470705 73470705 T C NEO1 Missense_Mutation p.C410R 0.32 deleterious(0) probably_damaging(0.939) TCGA-BR-4257-01 15 73594972 73594972 C T NEO1 Silent p.L1441L 0.20 TCGA-BR-4257-01 15 75968797 75968797 A G CSPG4 Silent p.H2021H 0.30 TCGA-BR-4257-01 15 78921917 78921917 C T CHRNB4 Missense_Mutation p.V244M 0.32 tolerated(0.08) possibly_damaging(0.898) TCGA-BR-4257-01 15 81633838 81633839 - G TMC3 Frame_Shift_Ins p.C580Mfs*80 0.17 TCGA-BR-4257-01 15 84237297 84237297 A G SH3GL3 Silent p.L68L 0.22 TCGA-BR-4257-01 15 85164068 85164068 C T ZSCAN2 Silent p.G214G 0.18 TCGA-BR-4257-01 15 90766851 90766851 C T SEMA4B Silent p.L308L 0.58 TCGA-BR-4257-01 15 94901781 94901781 G A MCTP2 Missense_Mutation p.G414D 0.34 tolerated(0.36) benign(0.02) TCGA-BR-4257-01 15 99671044 99671044 G A SYNM Missense_Mutation p.E826K 0.45 deleterious(0) probably_damaging(0.932) TCGA-BR-4257-01 15 99701948 99701948 T - TTC23 Frame_Shift_Del p.E331Rfs*7 0.21 TCGA-BR-4257-01 16 10850626 10850626 C T NUBP1 Missense_Mutation p.P147L 0.22 deleterious(0) probably_damaging(0.988) TCGA-BR-4257-01 16 10862889 10862889 C T TVP23A 3'UTR 0.15 TCGA-BR-4257-01 16 10868933 10868933 A - TVP23A Frame_Shift_Del p.F37Sfs*7 0.44 TCGA-BR-4257-01 16 1394670 1394670 C A BAIAP3 Nonsense_Mutation p.C611* 0.18 TCGA-BR-4257-01 16 14758878 14758878 A G BFAR Silent p.S370S 0.47 TCGA-BR-4257-01 16 16248763 16248763 G A ABCC6 Silent p.H1336H 0.38 TCGA-BR-4257-01 16 16302688 16302688 G A ABCC6 Silent p.L231L 0.14 TCGA-BR-4257-01 16 19883873 19883873 A G GPRC5B Missense_Mutation p.F99L 0.19 tolerated(0.52) benign(0.02) TCGA-BR-4257-01 16 2012162 2012162 G A RPS2 Silent p.L273L 0.20 TCGA-BR-4257-01 16 20702489 20702489 G A ACSM1 Missense_Mutation p.R8W 0.18 deleterious(0.01) possibly_damaging(0.794) TCGA-BR-4257-01 16 21042447 21042447 G A DNAH3 Missense_Mutation p.R1787C 0.20 deleterious(0) probably_damaging(1) TCGA-BR-4257-01 16 2240127 2240127 A G CASKIN1 Missense_Mutation p.L64S 0.16 probably_damaging(0.995) TCGA-BR-4257-01 16 2258499 2258499 G A MLST8 Silent p.T249T 0.23 TCGA-BR-4257-01 16 27353456 27353456 T C IL4R Silent p.L29L 0.14 TCGA-BR-4257-01 16 27761235 27761235 G - KIAA0556 Frame_Shift_Del p.D987Tfs*10 0.24 TCGA-BR-4257-01 16 28513323 28513323 C T IL27 Missense_Mutation p.D146N 0.26 deleterious(0.01) possibly_damaging(0.482) TCGA-BR-4257-01 16 29922371 29922371 G A KCTD13 Silent p.Y227Y 0.22 TCGA-BR-4257-01 16 30005496 30005496 T C HIRIP3 Missense_Mutation p.K324E 0.15 tolerated(0.3) benign(0.021) TCGA-BR-4257-01 16 30035577 30035577 C A C16orf92 3'UTR 0.36 TCGA-BR-4257-01 16 30100291 30100291 G T TBX6 Silent p.T198T 0.21 TCGA-BR-4257-01 16 31072722 31072722 A G ZNF668 Silent p.A532A 0.15 TCGA-BR-4257-01 16 31131803 31131803 C T KAT8 Missense_Mutation p.R144C 0.31 deleterious(0) probably_damaging(0.997) TCGA-BR-4257-01 16 31383801 31383801 G A ITGAX Missense_Mutation p.A755T 0.52 tolerated(0.24) benign(0.001) TCGA-BR-4257-01 16 339512 339512 C T AXIN1 Missense_Mutation p.R797H 0.27 deleterious(0) probably_damaging(0.997) TCGA-BR-4257-01 16 4164627 4164627 C T ADCY9 Missense_Mutation p.G273R 0.24 tolerated(0.23) benign(0.003) TCGA-BR-4257-01 16 4164980 4164980 A G ADCY9 Missense_Mutation p.V155A 0.23 tolerated(0.21) benign(0.002) TCGA-BR-4257-01 16 4312636 4312636 G A TFAP4 Silent p.I52I 0.50 TCGA-BR-4257-01 16 4701990 4701990 C T MGRN1 Silent p.H78H 0.25 TCGA-BR-4257-01 16 48576749 48576749 G A N4BP1 3'UTR 0.33 TCGA-BR-4257-01 16 49671711 49671711 G T ZNF423 Missense_Mutation p.P451H 0.07 deleterious(0) probably_damaging(0.993) TCGA-BR-4257-01 16 50332842 50332842 C A ADCY7 Missense_Mutation p.L326I 0.26 deleterious(0.03) probably_damaging(0.999) TCGA-BR-4257-01 16 50744697 50744697 C T NOD2 Missense_Mutation p.A292V 0.15 deleterious(0) probably_damaging(0.997) TCGA-BR-4257-01 16 51174686 51174686 C T SALL1 Missense_Mutation p.G483R 0.28 deleterious(0) probably_damaging(1) TCGA-BR-4257-01 16 55525756 55525756 C T MMP2 Silent p.A408A 0.33 TCGA-BR-4257-01 16 57016121 57016121 C T CETP Silent p.T431T 0.24 TCGA-BR-4257-01 16 57092035 57092035 C T NLRC5 Nonsense_Mutation p.Q1269* 0.37 TCGA-BR-4257-01 16 58288046 58288046 G A CCDC113 Missense_Mutation p.D125N 0.18 tolerated(0.38) benign(0.021) TCGA-BR-4257-01 16 58757658 58757658 C T GOT2 Missense_Mutation p.V80I 0.19 deleterious(0.05) benign(0.061) TCGA-BR-4257-01 16 67319435 67319435 G A PLEKHG4 Missense_Mutation p.R813H 0.20 deleterious(0) probably_damaging(0.997) TCGA-BR-4257-01 16 67412553 67412553 T A LRRC36 Missense_Mutation p.I623N 0.26 deleterious(0.02) possibly_damaging(0.876) TCGA-BR-4257-01 16 67909972 67909972 G A EDC4 Missense_Mutation p.M69I 0.18 tolerated(0.24) benign(0.001) TCGA-BR-4257-01 16 70154529 70154529 T A PDPR Missense_Mutation p.V45E 0.16 deleterious(0) probably_damaging(1) TCGA-BR-4257-01 16 70363885 70363885 C A DDX19B Missense_Mutation p.L313M 0.14 tolerated(0.27) benign(0.002) TCGA-BR-4257-01 16 709106 709106 C - WDR90 Frame_Shift_Del p.P1013Qfs*98 0.25 TCGA-BR-4257-01 16 71674764 71674764 C T MARVELD3 Missense_Mutation p.T356I 0.11 deleterious(0.04) probably_damaging(0.999) TCGA-BR-4257-01 16 72138432 72138432 G A DHX38 Silent p.T686T 0.29 TCGA-BR-4257-01 16 72831435 72831435 C T ZFHX3 Missense_Mutation p.A1716T 0.24 probably_damaging(0.956) TCGA-BR-4257-01 16 72993844 72993844 C T ZFHX3 Silent p.S67S 0.29 TCGA-BR-4257-01 16 733072 733072 G A JMJD8 Missense_Mutation p.P220S 0.19 deleterious(0.03) probably_damaging(0.971) TCGA-BR-4257-01 16 75634035 75634035 A - ADAT1 3'UTR 0.18 TCGA-BR-4257-01 16 75690483 75690483 C T TERF2IP Missense_Mutation p.R392W 0.20 deleterious(0) probably_damaging(0.99) TCGA-BR-4257-01 16 7645632 7645632 C T RBFOX1 Missense_Mutation p.R204C 0.34 deleterious(0) probably_damaging(1) TCGA-BR-4257-01 16 81171067 81171067 C T PKD1L2 5'Flank 0.27 TCGA-BR-4257-01 16 83159089 83159089 C T CDH13 Missense_Mutation p.P203S 0.19 deleterious(0) probably_damaging(0.997) TCGA-BR-4257-01 16 84623721 84623721 T C COTL1 Missense_Mutation p.E103G 0.12 deleterious(0.02) possibly_damaging(0.459) TCGA-BR-4257-01 16 84778544 84778544 A - USP10 Frame_Shift_Del p.K154Sfs*10 0.28 TCGA-BR-4257-01 16 84906600 84906600 G A CRISPLD2 Silent p.S328S 0.23 TCGA-BR-4257-01 16 85834824 85834824 A C COX4I1 Silent p.R5R 0.15 TCGA-BR-4257-01 16 86582174 86582174 T - MTHFSD Frame_Shift_Del p.T83Hfs*9 0.08 TCGA-BR-4257-01 16 88925094 88925094 C T TRAPPC2L Missense_Mutation p.T34I 0.31 deleterious(0.02) probably_damaging(0.989) TCGA-BR-4257-01 17 10447054 10447054 C T MYH2 Missense_Mutation p.V239M 0.23 deleterious(0.02) probably_damaging(0.921) TCGA-BR-4257-01 17 11837339 11837339 C T DNAH9 Missense_Mutation p.A4147V 0.22 possibly_damaging(0.898) TCGA-BR-4257-01 17 15909838 15909838 A - TTC19 Frame_Shift_Del p.I213Lfs*7 0.25 TCGA-BR-4257-01 17 18023246 18023246 G A MYO15A Missense_Mutation p.V378I 0.55 benign(0.021) TCGA-BR-4257-01 17 19642929 19642929 G T ALDH3A1 Missense_Mutation p.F336L 0.40 deleterious(0.01) benign(0.162) TCGA-BR-4257-01 17 19646727 19646727 A G ALDH3A1 Missense_Mutation p.I71T 0.16 deleterious(0.04) benign(0.027) TCGA-BR-4257-01 17 19823397 19823397 G A AKAP10 Nonsense_Mutation p.Q596* 0.24 TCGA-BR-4257-01 17 2279115 2279115 C T SGSM2 Silent p.A810A 0.28 TCGA-BR-4257-01 17 26943829 26943829 T C KIAA0100 Intron 0.60 TCGA-BR-4257-01 17 27614342 27614342 T - NUFIP2 Frame_Shift_Del p.R224Gfs*16 0.23 TCGA-BR-4257-01 17 27901773 27901773 C T GIT1 Missense_Mutation p.A754T 0.29 deleterious(0) probably_damaging(0.999) TCGA-BR-4257-01 17 28505167 28505167 A - NSRP1 Frame_Shift_Del p.K86Rfs*23 0.27 TCGA-BR-4257-01 17 2901577 2901577 G A RAP1GAP2 Silent p.T369T 0.22 TCGA-BR-4257-01 17 293243 293243 G A FAM101B Silent p.I49I 0.49 TCGA-BR-4257-01 17 33591816 33591816 A C SLFN5 Missense_Mutation p.T585P 0.18 deleterious(0) probably_damaging(0.999) TCGA-BR-4257-01 17 34432743 34432743 T C CCL4 3'UTR 0.32 TCGA-BR-4257-01 17 39182975 39182975 G T KRTAP1-5 Missense_Mutation p.Q145K 0.46 tolerated(0.1) probably_damaging(0.949) TCGA-BR-4257-01 17 39976119 39976119 G A FKBP10 Intron 0.40 TCGA-BR-4257-01 17 40359649 40359649 G A STAT5B Silent p.Y668Y 0.28 TCGA-BR-4257-01 17 42457968 42457968 C A ITGA2B Missense_Mutation p.R480I 0.33 deleterious(0) probably_damaging(0.994) TCGA-BR-4257-01 17 42942391 42942391 C T EFTUD2 Missense_Mutation p.E398K 0.30 tolerated(0.3) probably_damaging(0.914) TCGA-BR-4257-01 17 43182260 43182260 A G NMT1 Missense_Mutation p.M456V 0.20 deleterious(0) probably_damaging(0.953) TCGA-BR-4257-01 17 4442989 4442989 G A MYBBP1A Silent p.G1236G 0.39 TCGA-BR-4257-01 17 44626102 44626102 C T LRRC37A2 Silent p.N1199N 0.13 TCGA-BR-4257-01 17 4726022 4726022 C - PLD2 Frame_Shift_Del p.L891Wfs*21 0.23 TCGA-BR-4257-01 17 53392780 53392780 G A HLF Missense_Mutation p.R215H 0.33 deleterious(0) probably_damaging(0.998) TCGA-BR-4257-01 17 54981777 54981777 C A TRIM25 Nonsense_Mutation p.E256* 0.21 TCGA-BR-4257-01 17 55752431 55752431 A G MSI2 Missense_Mutation p.N297D 0.25 deleterious(0.04) benign(0.366) TCGA-BR-4257-01 17 57643017 57643017 A G DHX40 5'UTR 0.40 TCGA-BR-4257-01 17 61574303 61574303 G A ACE Silent p.G1216G 0.47 TCGA-BR-4257-01 17 61895288 61895288 G A DDX42 Missense_Mutation p.G783R 0.31 tolerated_low_confidence(0.08) benign(0.398) TCGA-BR-4257-01 17 62020337 62020337 C T SCN4A Silent p.Q1379Q 0.21 TCGA-BR-4257-01 17 62141446 62141446 C T ERN1 Silent p.K329K 0.29 TCGA-BR-4257-01 17 63526100 63526100 G A AXIN2 Silent p.I842I 0.32 TCGA-BR-4257-01 17 67125775 67125775 G A ABCA6 Silent p.L303L 0.21 TCGA-BR-4257-01 17 67178424 67178424 C A ABCA10 Missense_Mutation p.R880I 0.27 deleterious(0) probably_damaging(0.962) TCGA-BR-4257-01 17 67221504 67221504 C A ABCA10 5'UTR 0.20 TCGA-BR-4257-01 17 68171712 68171712 G T KCNJ2 Missense_Mutation p.A178S 0.27 deleterious(0) probably_damaging(1) TCGA-BR-4257-01 17 72700850 72700850 A G CD300LF Missense_Mutation p.L50S 0.24 tolerated(0.85) benign(0.035) TCGA-BR-4257-01 17 74004745 74004745 G A EVPL Missense_Mutation p.S1514L 0.34 deleterious(0.04) benign(0.004) TCGA-BR-4257-01 17 74625570 74625570 C T ST6GALNAC1 Missense_Mutation p.A119T 0.26 benign(0.042) TCGA-BR-4257-01 17 77705066 77705066 C T ENPP7 Silent p.D55D 0.50 TCGA-BR-4257-01 17 78865556 78865556 T C RPTOR Missense_Mutation p.Y674H 0.28 deleterious(0) possibly_damaging(0.825) TCGA-BR-4257-01 17 78882649 78882649 G T RPTOR Missense_Mutation p.V814F 0.13 deleterious(0.05) benign(0.013) TCGA-BR-4257-01 17 78938131 78938131 C T RPTOR 3'UTR 0.33 TCGA-BR-4257-01 17 79078339 79078339 G A BAIAP2 Silent p.S364S 0.23 TCGA-BR-4257-01 17 79430712 79430712 C T RP11-1055B8.7 Missense_Mutation p.R2566C 0.27 probably_damaging(0.995) TCGA-BR-4257-01 17 79984832 79984832 G A LRRC45 Missense_Mutation p.R240H 0.38 deleterious(0) possibly_damaging(0.694) TCGA-BR-4257-01 17 80332642 80332642 C T UTS2R Missense_Mutation p.R148C 0.64 deleterious(0) probably_damaging(1) TCGA-BR-4257-01 17 80529613 80529613 C T FOXK2 Missense_Mutation p.P259L 0.33 deleterious(0.02) possibly_damaging(0.545) TCGA-BR-4257-01 18 12274164 12274164 A G CIDEA Missense_Mutation p.R135G 0.24 deleterious(0) benign(0.001) TCGA-BR-4257-01 18 12325150 12325150 G A TUBB6 Missense_Mutation p.R121Q 0.33 deleterious_low_confidence(0.05) probably_damaging(0.966) TCGA-BR-4257-01 18 21109596 21109596 T C C18orf8 Intron 0.20 TCGA-BR-4257-01 18 29044085 29044085 T C DSG3 Silent p.Y337Y 0.11 TCGA-BR-4257-01 18 42281525 42281525 A C SETBP1 Missense_Mutation p.N72H 0.20 tolerated(0.06) possibly_damaging(0.814) TCGA-BR-4257-01 18 42530559 42530560 - A SETBP1 Frame_Shift_Ins p.R421Kfs*5 0.21 TCGA-BR-4257-01 18 43253755 43253755 C T SLC14A2 Nonsense_Mutation p.Q829* 0.29 TCGA-BR-4257-01 18 43459143 43459143 A - EPG5 Frame_Shift_Del p.Y1902Ifs*26 0.12 TCGA-BR-4257-01 18 44561289 44561289 G T TCEB3B Missense_Mutation p.A116E 0.16 tolerated(0.35) benign(0.002) TCGA-BR-4257-01 18 47811481 47811481 T C CXXC1 Missense_Mutation p.E268G 0.38 tolerated(0.25) benign(0.219) TCGA-BR-4257-01 18 48241512 48241512 A G MAPK4 Missense_Mutation p.N204D 0.19 deleterious(0.04) probably_damaging(0.965) TCGA-BR-4257-01 18 48604840 48604840 T C SMAD4 3'UTR 0.41 TCGA-BR-4257-01 18 48703458 48703458 T G MEX3C Missense_Mutation p.S415R 0.11 deleterious(0.03) possibly_damaging(0.507) TCGA-BR-4257-01 18 5396200 5396200 C A EPB41L3 Missense_Mutation p.Q991H 0.34 deleterious(0.02) possibly_damaging(0.857) TCGA-BR-4257-01 18 55233706 55233706 A G FECH Missense_Mutation p.Y197H 0.38 deleterious(0) probably_damaging(0.999) TCGA-BR-4257-01 18 55335683 55335683 C G ATP8B1 Missense_Mutation p.W729C 0.33 deleterious(0) probably_damaging(1) TCGA-BR-4257-01 18 55862926 55862926 C A NEDD4L Intron 0.31 TCGA-BR-4257-01 18 59221533 59221533 G A CDH20 Missense_Mutation p.G671S 0.54 deleterious(0.01) probably_damaging(0.98) TCGA-BR-4257-01 18 61154235 61154235 G A SERPINB5 Silent p.S75S 0.30 TCGA-BR-4257-01 18 61260166 61260166 C T SERPINB13 Nonsense_Mutation p.R145* 0.17 TCGA-BR-4257-01 18 67806936 67806936 A G RTTN Missense_Mutation p.V896A 0.38 deleterious(0.03) benign(0.157) TCGA-BR-4257-01 18 72178084 72178084 A G CNDP2 Missense_Mutation p.M165V 0.27 deleterious(0) probably_damaging(0.979) TCGA-BR-4257-01 18 72998529 72998529 C T TSHZ1 Silent p.Y344Y 0.25 TCGA-BR-4257-01 18 73000349 73000349 G A TSHZ1 Missense_Mutation p.S951N 0.36 tolerated(0.09) benign(0.072) TCGA-BR-4257-01 18 74563868 74563868 G A ZNF236 Silent p.A110A 0.12 TCGA-BR-4257-01 18 77475147 77475147 C T CTDP1 Silent p.L563L 0.31 TCGA-BR-4257-01 18 77894088 77894088 G A ADNP2 Silent p.T264T 0.35 TCGA-BR-4257-01 18 77894778 77894778 G A ADNP2 Silent p.P494P 0.24 TCGA-BR-4257-01 19 10419251 10419251 C T ZGLP1 Missense_Mutation p.R36H 0.16 tolerated_low_confidence(0.15) benign(0.001) TCGA-BR-4257-01 19 10506695 10506695 C T CDC37 Missense_Mutation p.R96Q 0.26 tolerated(0.15) benign(0.075) TCGA-BR-4257-01 19 10610092 10610092 G A KEAP1 Silent p.Y206Y 0.22 TCGA-BR-4257-01 19 11565601 11565601 C T ELAVL3 Missense_Mutation p.A282T 0.24 tolerated(0.68) benign(0.003) TCGA-BR-4257-01 19 11664600 11664600 G A ELOF1 Silent p.Y71Y 0.31 TCGA-BR-4257-01 19 12155504 12155504 A - ZNF878 Frame_Shift_Del p.S238Lfs*5 0.30 TCGA-BR-4257-01 19 12384448 12384448 A - ZNF44 Frame_Shift_Del p.W256Gfs*34 0.26 TCGA-BR-4257-01 19 12638137 12638137 A G ZNF564 Missense_Mutation p.F262S 0.26 deleterious(0) probably_damaging(0.998) TCGA-BR-4257-01 19 14574680 14574680 C T PKN1 Silent p.V518V 0.38 TCGA-BR-4257-01 19 14785673 14785673 T C EMR3 5'UTR 0.15 TCGA-BR-4257-01 19 16268222 16268222 G A HSH2D 3'Flank 0.25 TCGA-BR-4257-01 19 16275653 16275654 - C CIB3 Frame_Shift_Ins p.L140Afs*11 0.30 TCGA-BR-4257-01 19 17298808 17298808 C T MYO9B Missense_Mutation p.T881I 0.33 deleterious(0.03) probably_damaging(0.997) TCGA-BR-4257-01 19 17452410 17452410 G T GTPBP3 Missense_Mutation p.E491D 0.21 deleterious(0.01) probably_damaging(1) TCGA-BR-4257-01 19 17664480 17664480 C T FAM129C 3'UTR 0.25 TCGA-BR-4257-01 19 19735185 19735185 G A LPAR2 Silent p.C312C 0.26 TCGA-BR-4257-01 19 19906095 19906095 A G ZNF506 Missense_Mutation p.Y201H 0.08 deleterious(0.04) possibly_damaging(0.765) TCGA-BR-4257-01 19 21477541 21477541 G A ZNF708 Missense_Mutation p.A76V 0.27 tolerated(1) benign(0) TCGA-BR-4257-01 19 21934394 21934394 G A ZNF100 Intron 0.16 TCGA-BR-4257-01 19 2254215 2254215 G A JSRP1 Missense_Mutation p.T78M 0.23 deleterious(0.02) benign(0.239) TCGA-BR-4257-01 19 22817260 22817260 C T ZNF492 5'UTR 0.34 TCGA-BR-4257-01 19 2737214 2737214 G A SLC39A3 Silent p.G14G 0.47 TCGA-BR-4257-01 19 2833886 2833886 C T ZNF554 Missense_Mutation p.A218V 0.25 tolerated(0.26) benign(0.002) TCGA-BR-4257-01 19 2877814 2877814 G A ZNF556 Silent p.P286P 0.33 TCGA-BR-4257-01 19 31039376 31039376 C T ZNF536 Silent p.H950H 0.28 TCGA-BR-4257-01 19 31039865 31039865 G T ZNF536 Missense_Mutation p.K1113N 0.30 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-BR-4257-01 19 34687605 34687605 C T LSM14A Missense_Mutation p.P118S 0.28 tolerated(0.1) benign(0.077) TCGA-BR-4257-01 19 35174067 35174067 C T ZNF302 Silent p.S46S 0.22 TCGA-BR-4257-01 19 36051500 36051500 G A ATP4A Silent p.R184R 0.24 TCGA-BR-4257-01 19 37210721 37210721 T A ZNF567 Nonsense_Mutation p.Y334* 0.28 TCGA-BR-4257-01 19 38189172 38189172 T C ZNF607 Silent p.K620K 0.32 TCGA-BR-4257-01 19 38572895 38572895 C T SIPA1L3 Silent p.P230P 0.28 TCGA-BR-4257-01 19 38573583 38573583 G A SIPA1L3 Missense_Mutation p.A460T 0.46 tolerated(0.15) benign(0.001) TCGA-BR-4257-01 19 38706879 38706879 T C DPF1 Missense_Mutation p.T294A 0.39 tolerated(0.8) benign(0.02) TCGA-BR-4257-01 19 39018367 39018367 C T RYR1 Silent p.P3589P 0.30 TCGA-BR-4257-01 19 39221806 39221806 C T CAPN12 Missense_Mutation p.R672H 0.25 deleterious(0.03) possibly_damaging(0.452) TCGA-BR-4257-01 19 39399383 39399383 G A NFKBIB Missense_Mutation p.D328N 0.17 deleterious(0.01) probably_damaging(0.993) TCGA-BR-4257-01 19 39443215 39443215 T C FBXO17 Intron 0.25 TCGA-BR-4257-01 19 39735101 39735101 G A IFNL3 Missense_Mutation p.R72C 0.23 deleterious(0.01) possibly_damaging(0.65) TCGA-BR-4257-01 19 39860437 39860437 C T SAMD4B Silent p.I113I 0.30 TCGA-BR-4257-01 19 40368706 40368706 G A FCGBP Silent p.C4214C 0.16 TCGA-BR-4257-01 19 40520949 40520949 G C ZNF546 Missense_Mutation p.S591T 0.12 tolerated(0.41) benign(0) TCGA-BR-4257-01 19 41265406 41265406 G A SNRPA Missense_Mutation p.R106H 0.38 deleterious(0.02) possibly_damaging(0.502) TCGA-BR-4257-01 19 41388023 41388023 C T CYP2A7 Silent p.G31G 0.31 TCGA-BR-4257-01 19 4164623 4164623 C T CREB3L3 Silent p.L234L 0.14 TCGA-BR-4257-01 19 42839311 42839311 G A MEGF8 Missense_Mutation p.R228H 0.30 deleterious(0) probably_damaging(0.988) TCGA-BR-4257-01 19 42937210 42937210 C T CXCL17 Silent p.P60P 0.39 TCGA-BR-4257-01 19 43015774 43015774 G A CEACAM1 Silent p.S461S 0.17 TCGA-BR-4257-01 19 43690566 43690566 C T PSG5 5'UTR 0.31 TCGA-BR-4257-01 19 44127432 44127432 G - CADM4 3'UTR 0.37 TCGA-BR-4257-01 19 44739572 44739572 G T ZNF227 Missense_Mutation p.G330V 0.38 deleterious(0.01) probably_damaging(1) TCGA-BR-4257-01 19 45574990 45574990 G A ZNF296 Missense_Mutation p.R433C 0.31 deleterious(0) probably_damaging(0.994) TCGA-BR-4257-01 19 45974040 45974040 G A FOSB Missense_Mutation p.V94I 0.21 tolerated(0.35) benign(0.103) TCGA-BR-4257-01 19 46278263 46278263 C T DMPK Silent p.A402A 0.29 TCGA-BR-4257-01 19 47984241 47984241 C T KPTN Missense_Mutation p.D167N 0.42 deleterious(0.04) benign(0.263) TCGA-BR-4257-01 19 48343102 48343102 G A CRX Missense_Mutation p.A260T 0.26 tolerated(0.2) benign(0) TCGA-BR-4257-01 19 49863216 49863216 C T TEAD2 Silent p.P39P 0.42 TCGA-BR-4257-01 19 51631709 51631709 C T SIGLEC9 Missense_Mutation p.A382V 0.30 tolerated(0.32) benign(0.032) TCGA-BR-4257-01 19 53138423 53138423 T A ZNF83 5'UTR 0.26 TCGA-BR-4257-01 19 53269380 53269380 G A ZNF600 Silent p.C543C 0.28 TCGA-BR-4257-01 19 54515275 54515275 G A CACNG6 Silent p.P205P 0.43 TCGA-BR-4257-01 19 55221587 55221587 T G AC098784.2 3'Flank 0.16 TCGA-BR-4257-01 19 55450708 55450708 G A NLRP7 Silent p.H493H 0.24 TCGA-BR-4257-01 19 55994085 55994085 G A ZNF628 Missense_Mutation p.A509T 0.23 deleterious(0.03) probably_damaging(0.981) TCGA-BR-4257-01 19 56392902 56392902 T G NLRP4 Silent p.P978P 0.15 TCGA-BR-4257-01 19 5693672 5693672 A G LONP1 Missense_Mutation p.M810T 0.25 deleterious(0) probably_damaging(0.998) TCGA-BR-4257-01 19 5744474 5744474 T - CATSPERD Frame_Shift_Del p.S206Lfs*9 0.23 TCGA-BR-4257-01 19 59068128 59068128 G - UBE2M Frame_Shift_Del p.K92Rfs*2 0.36 TCGA-BR-4257-01 19 6760727 6760727 A C SH2D3A Missense_Mutation p.V114G 0.20 deleterious(0) probably_damaging(0.945) TCGA-BR-4257-01 19 7676981 7676981 G - CAMSAP3 Frame_Shift_Del p.E563Rfs*27 0.37 TCGA-BR-4257-01 19 7685435 7685435 G A XAB2 Missense_Mutation p.R698W 0.31 deleterious(0) probably_damaging(0.995) TCGA-BR-4257-01 19 8367483 8367483 A G CD320 Missense_Mutation p.L238P 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-BR-4257-01 19 861776 861776 A G CFD Silent p.G145G 0.23 TCGA-BR-4257-01 19 8808138 8808138 G - ACTL9 Frame_Shift_Del p.P305Qfs*? 0.41 TCGA-BR-4257-01 19 8932736 8932736 T C ZNF558 Silent p.Q21Q 0.21 TCGA-BR-4257-01 19 9087343 9087343 G A MUC16 Missense_Mutation p.P1491L 0.26 unknown(0) TCGA-BR-4257-01 19 9362079 9362079 T - OR7E24 Frame_Shift_Del p.F122Lfs*12 0.24 TCGA-BR-4257-01 19 9524026 9524026 G A ZNF266 Silent p.C525C 0.34 TCGA-BR-4257-01 19 9968487 9968487 G A OLFM2 Silent p.R88R 0.52 TCGA-BR-4257-01 1 104113159 104113159 G T AMY2B Intron 0.39 TCGA-BR-4257-01 1 10502436 10502436 G A APITD1-CORT Intron 0.27 TCGA-BR-4257-01 1 110134705 110134705 C T GNAI3 Silent p.C305C 0.22 TCGA-BR-4257-01 1 111781482 111781482 G - CHI3L2 Frame_Shift_Del p.A284Pfs*28 0.33 TCGA-BR-4257-01 1 113057636 113057636 A G WNT2B Missense_Mutation p.Q108R 0.29 deleterious(0.01) possibly_damaging(0.819) TCGA-BR-4257-01 1 113666514 113666514 G A LRIG2 Missense_Mutation p.V997M 0.42 deleterious(0.02) benign(0.029) TCGA-BR-4257-01 1 114201800 114201800 T C MAGI3 Missense_Mutation p.S910P 0.21 deleterious(0) probably_damaging(0.999) TCGA-BR-4257-01 1 114247302 114247302 G A PHTF1 Missense_Mutation p.R597C 0.20 deleterious(0) probably_damaging(0.973) TCGA-BR-4257-01 1 114248545 114248546 - A PHTF1 Frame_Shift_Ins p.M547Hfs*10 0.28 TCGA-BR-4257-01 1 11716005 11716005 G A FBXO44 Missense_Mutation p.R38Q 0.38 deleterious(0.01) probably_damaging(0.994) TCGA-BR-4257-01 1 11894557 11894557 G A CLCN6 Missense_Mutation p.G568E 0.23 deleterious(0) probably_damaging(1) TCGA-BR-4257-01 1 1293893 1293893 C T MXRA8 5'UTR 0.43 TCGA-BR-4257-01 1 13719053 13719053 T G PRAMEF17 3'UTR 0.36 TCGA-BR-4257-01 1 145580195 145580195 T - PIAS3 Frame_Shift_Del p.P228Qfs*50 0.19 TCGA-BR-4257-01 1 145580520 145580520 G A PIAS3 Missense_Mutation p.V274M 0.14 deleterious(0) probably_damaging(0.98) TCGA-BR-4257-01 1 1455959 1455959 C A ATAD3A Missense_Mutation p.R286S 0.33 tolerated(0.27) benign(0.047) TCGA-BR-4257-01 1 149900796 149900796 A - MTMR11 3'UTR 0.14 TCGA-BR-4257-01 1 150307612 150307612 A G PRPF3 Missense_Mutation p.D312G 0.11 deleterious(0) probably_damaging(0.992) TCGA-BR-4257-01 1 150444651 150444651 A G RPRD2 Missense_Mutation p.D1076G 0.13 deleterious_low_confidence(0.04) benign(0.015) TCGA-BR-4257-01 1 150529494 150529494 C - ADAMTSL4 Frame_Shift_Del p.P611Qfs*13 0.18 TCGA-BR-4257-01 1 150599611 150599611 A - ENSA Intron 0.19 TCGA-BR-4257-01 1 151288877 151288877 C - PI4KB Frame_Shift_Del p.S40Pfs*3 0.15 TCGA-BR-4257-01 1 151336943 151336944 AG - SELENBP1 3'UTR 0.22 TCGA-BR-4257-01 1 152082386 152082386 G A TCHH Missense_Mutation p.R1103C 0.19 unknown(0) TCGA-BR-4257-01 1 152277765 152277765 C A FLG Missense_Mutation p.Q3199H 0.16 unknown(0) TCGA-BR-4257-01 1 152283156 152283156 T C FLG Silent p.S1402S 0.15 TCGA-BR-4257-01 1 152383276 152383276 C A CRNN Missense_Mutation p.E94D 0.19 tolerated(0.22) benign(0.065) TCGA-BR-4257-01 1 153066064 153066064 G T SPRR2E Missense_Mutation p.P55H 0.13 deleterious_low_confidence(0) unknown(0) TCGA-BR-4257-01 1 153533830 153533830 A - S100A2 3'UTR 0.17 TCGA-BR-4257-01 1 153580105 153580105 G A S100A16 Missense_Mutation p.R73C 0.17 tolerated(0.16) benign(0.008) TCGA-BR-4257-01 1 154242685 154242685 G A UBAP2L Missense_Mutation p.G1060R 0.21 deleterious(0) possibly_damaging(0.448) TCGA-BR-4257-01 1 154557360 154557360 T - ADAR Frame_Shift_Del p.G1202Afs*2 0.17 TCGA-BR-4257-01 1 155165843 155165843 C T THBS3 Missense_Mutation p.R916H 0.16 deleterious(0) probably_damaging(0.999) TCGA-BR-4257-01 1 155206085 155206085 C T GBA Missense_Mutation p.R392Q 0.28 tolerated(0.59) benign(0.006) TCGA-BR-4257-01 1 155324299 155324299 T C ASH1L Missense_Mutation p.N2393S 0.16 tolerated_low_confidence(0.17) benign(0.19) TCGA-BR-4257-01 1 155449753 155449753 T - ASH1L Frame_Shift_Del p.I970Lfs*9 0.15 TCGA-BR-4257-01 1 155450116 155450116 T - ASH1L Frame_Shift_Del p.I849Sfs*49 0.18 TCGA-BR-4257-01 1 155630972 155630972 T C YY1AP1 Intron 0.11 TCGA-BR-4257-01 1 156213673 156213673 C T PAQR6 Silent p.E345E 0.19 TCGA-BR-4257-01 1 156230321 156230321 C T SMG5 Missense_Mutation p.R735H 0.15 tolerated(0.16) probably_damaging(0.996) TCGA-BR-4257-01 1 156264628 156264628 T C C1orf85 Silent p.L100L 0.17 TCGA-BR-4257-01 1 156309480 156309480 T C TSACC 5'UTR 0.29 TCGA-BR-4257-01 1 156616821 156616821 G A BCAN Missense_Mutation p.R107H 0.19 deleterious(0) probably_damaging(0.984) TCGA-BR-4257-01 1 156622146 156622146 A G BCAN Silent p.E468E 0.23 TCGA-BR-4257-01 1 156704046 156704046 C T RRNAD1 Silent p.G294G 0.26 TCGA-BR-4257-01 1 156909341 156909341 T C ARHGEF11 Silent p.K1365K 0.12 TCGA-BR-4257-01 1 157548310 157548310 C T FCRL4 Silent p.L461L 0.06 TCGA-BR-4257-01 1 157738406 157738406 T C FCRL2 Silent p.S227S 0.22 TCGA-BR-4257-01 1 158615094 158615094 G A SPTA1 Missense_Mutation p.H1360Y 0.14 deleterious(0) probably_damaging(1) TCGA-BR-4257-01 1 160340833 160340833 G A NHLH1 Silent p.T104T 0.22 TCGA-BR-4257-01 1 160718187 160718187 G T SLAMF7 Missense_Mutation p.G87C 0.12 deleterious(0.02) possibly_damaging(0.907) TCGA-BR-4257-01 1 160803894 160803894 T C CD244 Missense_Mutation p.T308A 0.14 tolerated(0.07) possibly_damaging(0.614) TCGA-BR-4257-01 1 161011148 161011148 G A USF1 Missense_Mutation p.R176C 0.16 deleterious(0) possibly_damaging(0.586) TCGA-BR-4257-01 1 161012379 161012379 A G USF1 Missense_Mutation p.V47A 0.22 deleterious(0) benign(0.023) TCGA-BR-4257-01 1 161018993 161018993 C A ARHGAP30 Missense_Mutation p.E606D 0.15 tolerated(0.16) possibly_damaging(0.817) TCGA-BR-4257-01 1 161128328 161128328 C T UFC1 3'UTR 0.23 TCGA-BR-4257-01 1 161134845 161134845 C T USP21 Missense_Mutation p.L507F 0.16 deleterious(0) probably_damaging(0.958) TCGA-BR-4257-01 1 161494672 161494672 T C HSPA6 Missense_Mutation p.L75P 0.12 deleterious_low_confidence(0) probably_damaging(1) TCGA-BR-4257-01 1 161495689 161495689 C T HSPA6 Missense_Mutation p.T414M 0.22 tolerated_low_confidence(0.09) benign(0.357) TCGA-BR-4257-01 1 163306561 163306561 T - NUF2 Frame_Shift_Del p.L121* 0.09 TCGA-BR-4257-01 1 163310207 163310207 C T NUF2 Silent p.T220T 0.17 TCGA-BR-4257-01 1 16459802 16459802 C T EPHA2 Silent p.P642P 0.30 TCGA-BR-4257-01 1 165623555 165623555 C T MGST3 Nonsense_Mutation p.R97* 0.13 TCGA-BR-4257-01 1 165624812 165624812 T C MGST3 3'UTR 0.27 TCGA-BR-4257-01 1 167971802 167971802 G A DCAF6 Missense_Mutation p.R329Q 0.22 tolerated(0.11) probably_damaging(0.964) TCGA-BR-4257-01 1 168054869 168054869 C - GPR161 Frame_Shift_Del p.G517Afs*13 0.25 TCGA-BR-4257-01 1 1687948 1687948 G A NADK Nonsense_Mutation p.R310* 0.19 TCGA-BR-4257-01 1 169494110 169494112 ATG - F5 In_Frame_Del p.I1918del 0.16 TCGA-BR-4257-01 1 170043657 170043657 G A KIFAP3 5'UTR 0.26 TCGA-BR-4257-01 1 171763553 171763553 G A METTL13 Missense_Mutation p.V571I 0.12 tolerated(0.19) benign(0.34) TCGA-BR-4257-01 1 173570977 173570978 TC - SLC9C2 5'UTR 0.16 TCGA-BR-4257-01 1 175325505 175325505 G A TNR Missense_Mutation p.A1023V 0.15 deleterious(0) probably_damaging(1) TCGA-BR-4257-01 1 17607262 17607262 A - PADI3 Frame_Shift_Del p.A580Qfs*9 0.30 TCGA-BR-4257-01 1 178427415 178427415 A G RASAL2 Missense_Mutation p.I996M 0.14 tolerated(0.24) benign(0.011) TCGA-BR-4257-01 1 181021588 181021588 C T MR1 Silent p.N274N 0.17 TCGA-BR-4257-01 1 183190061 183190061 A G LAMC2 Missense_Mutation p.Y202C 0.14 deleterious(0) probably_damaging(0.954) TCGA-BR-4257-01 1 183533152 183533152 T - NCF2 Frame_Shift_Del p.E339Kfs*6 0.13 TCGA-BR-4257-01 1 183857685 183857685 A - RGL1 Frame_Shift_Del p.K380Rfs*12 0.16 TCGA-BR-4257-01 1 185964206 185964206 G A HMCN1 Silent p.T1255T 0.17 TCGA-BR-4257-01 1 186276818 186276818 C T PRG4 Missense_Mutation p.P656L 0.08 unknown(0) TCGA-BR-4257-01 1 186300667 186300667 T C TPR Missense_Mutation p.Q1884R 0.18 benign(0.069) TCGA-BR-4257-01 1 193050593 193050593 G A TROVE2 Missense_Mutation p.A396T 0.23 deleterious(0.04) probably_damaging(0.986) TCGA-BR-4257-01 1 19467923 19467923 G - UBR4 Frame_Shift_Del p.M2803Cfs*16 0.31 TCGA-BR-4257-01 1 19471342 19471342 T C UBR4 Missense_Mutation p.T2669A 0.07 benign(0.001) TCGA-BR-4257-01 1 198682089 198682089 A T PTPRC Silent p.G393G 0.11 TCGA-BR-4257-01 1 200376939 200376939 C T ZNF281 Missense_Mutation p.R632Q 0.12 tolerated(0.24) possibly_damaging(0.715) TCGA-BR-4257-01 1 200628222 200628222 C T DDX59 Missense_Mutation p.R332Q 0.22 deleterious(0) probably_damaging(0.932) TCGA-BR-4257-01 1 20066382 20066382 C - TMCO4 Frame_Shift_Del p.V372Cfs*29 0.43 TCGA-BR-4257-01 1 200801853 200801853 T C CAMSAP2 Silent p.T269T 0.18 TCGA-BR-4257-01 1 200867455 200867455 C A C1orf106 5'UTR 0.18 TCGA-BR-4257-01 1 201079310 201079312 GTT - CACNA1S In_Frame_Del p.N80del 0.22 TCGA-BR-4257-01 1 203194798 203194800 TCT - CHIT1 In_Frame_Del p.K85del 0.23 TCGA-BR-4257-01 1 203317092 203317092 C T FMOD Missense_Mutation p.V103I 0.14 tolerated(0.21) possibly_damaging(0.62) TCGA-BR-4257-01 1 203821387 203821387 C T ZC3H11A Missense_Mutation p.P765S 0.11 tolerated(0.09) benign(0.127) TCGA-BR-4257-01 1 204172078 204172080 GAA - GOLT1A In_Frame_Del p.F21del 0.11 TCGA-BR-4257-01 1 204438278 204438278 C G PIK3C2B Missense_Mutation p.G218A 0.18 deleterious_low_confidence(0.05) benign(0.013) TCGA-BR-4257-01 1 204985644 204985644 A G NFASC Missense_Mutation p.N1234D 0.15 deleterious(0) unknown(0) TCGA-BR-4257-01 1 205116774 205116774 A G DSTYK Missense_Mutation p.I901T 0.18 tolerated(0.47) possibly_damaging(0.707) TCGA-BR-4257-01 1 205211172 205211172 G T TMCC2 Missense_Mutation p.K249N 0.17 tolerated(0.05) benign(0.104) TCGA-BR-4257-01 1 207679272 207679272 C T CR1 Missense_Mutation p.L49F 0.19 tolerated(0.55) benign(0.015) TCGA-BR-4257-01 1 207818592 207818592 T A CR1L Missense_Mutation p.V5D 0.08 tolerated_low_confidence(0.41) benign(0.001) TCGA-BR-4257-01 1 208216416 208216416 C A PLXNA2 Missense_Mutation p.R1336L 0.11 deleterious(0) benign(0.236) TCGA-BR-4257-01 1 212548597 212548597 T - TMEM206 Frame_Shift_Del p.S338Vfs*22 0.22 TCGA-BR-4257-01 1 21546439 21546439 G A ECE1 3'UTR 0.52 TCGA-BR-4257-01 1 215812576 215812576 G T USH2A Missense_Mutation p.F4991L 0.19 benign(0.058) TCGA-BR-4257-01 1 215814033 215814033 A C USH2A Silent p.S4945S 0.06 TCGA-BR-4257-01 1 215847625 215847625 C A USH2A Missense_Mutation p.R4543M 0.15 benign(0.436) TCGA-BR-4257-01 1 220363814 220363814 A G RAB3GAP2 Silent p.S512S 0.17 TCGA-BR-4257-01 1 222832843 222832844 - T MIA3 Frame_Shift_Ins p.K1588* 0.15 TCGA-BR-4257-01 1 224424208 224424208 G A NVL Missense_Mutation p.T789M 0.17 deleterious(0) probably_damaging(0.96) TCGA-BR-4257-01 1 226175749 226175749 C A SDE2 Nonsense_Mutation p.E328* 0.12 TCGA-BR-4257-01 1 226426761 226426761 G A LIN9 Missense_Mutation p.R402W 0.15 deleterious(0) probably_damaging(0.952) TCGA-BR-4257-01 1 227239649 227239649 C T CDC42BPA Intron 0.16 TCGA-BR-4257-01 1 228210365 228210365 C T WNT3A Intron 0.18 TCGA-BR-4257-01 1 229737984 229737984 G A TAF5L Silent p.D310D 0.11 TCGA-BR-4257-01 1 231488454 231488454 A T SPRTN Missense_Mutation p.I273F 0.13 tolerated(0.54) benign(0.169) TCGA-BR-4257-01 1 233120166 233120166 G A PCNXL2 Nonsense_Mutation p.R2100* 0.26 TCGA-BR-4257-01 1 234444893 234444893 T - SLC35F3 Frame_Shift_Del p.F220Lfs*22 0.18 TCGA-BR-4257-01 1 235345419 235345419 T - ARID4B Frame_Shift_Del p.T939Rfs*2 0.12 TCGA-BR-4257-01 1 235628893 235628893 G A B3GALNT2 Intron 0.22 TCGA-BR-4257-01 1 236646654 236646654 A G EDARADD 3'Flank 0.21 TCGA-BR-4257-01 1 236740226 236740226 G T HEATR1 Missense_Mutation p.L927M 0.06 deleterious(0) probably_damaging(0.952) TCGA-BR-4257-01 1 236925910 236925910 C T ACTN2 Silent p.S892S 0.18 TCGA-BR-4257-01 1 237732550 237732550 C T RYR2 Silent p.L1177L 0.26 TCGA-BR-4257-01 1 237791158 237791158 C T RYR2 Missense_Mutation p.S2073F 0.23 possibly_damaging(0.861) TCGA-BR-4257-01 1 241912901 241912901 G T WDR64 Silent p.P539P 0.56 TCGA-BR-4257-01 1 242159681 242159681 G A MAP1LC3C Silent p.R76R 0.11 TCGA-BR-4257-01 1 243303325 243303325 C T CEP170 Missense_Mutation p.G1382S 0.18 tolerated(0.09) benign(0.004) TCGA-BR-4257-01 1 247464263 247464263 C T ZNF496 Missense_Mutation p.G441E 0.22 deleterious(0) probably_damaging(0.998) TCGA-BR-4257-01 1 247751877 247751877 G A OR2G2 Silent p.L72L 0.16 TCGA-BR-4257-01 1 247769166 247769166 T G OR2G3 Silent p.T93T 0.18 TCGA-BR-4257-01 1 249211828 249211828 T - PGBD2 Frame_Shift_Del p.F350Lfs*10 0.23 TCGA-BR-4257-01 1 25569052 25569052 T C C1orf63 3'UTR 0.21 TCGA-BR-4257-01 1 27269258 27269258 G A NUDC Silent p.S179S 0.40 TCGA-BR-4257-01 1 32086581 32086581 G A HCRTR1 Silent p.S172S 0.33 TCGA-BR-4257-01 1 32150143 32150143 G A COL16A1 Missense_Mutation p.A714V 0.29 unknown(0) TCGA-BR-4257-01 1 32636524 32636524 G T KPNA6 3'UTR 0.36 TCGA-BR-4257-01 1 32745576 32745576 C T LCK Silent p.N392N 0.34 TCGA-BR-4257-01 1 3342751 3342751 T C PRDM16 Silent p.N1082N 0.23 TCGA-BR-4257-01 1 34180274 34180274 G A CSMD2 Missense_Mutation p.P1067S 0.31 tolerated(0.16) possibly_damaging(0.604) TCGA-BR-4257-01 1 36354182 36354182 G T AGO1 Missense_Mutation p.K60N 0.22 tolerated(0.23) possibly_damaging(0.694) TCGA-BR-4257-01 1 36859607 36859607 G A LSM10 Missense_Mutation p.R42C 0.29 tolerated(0.07) probably_damaging(0.91) TCGA-BR-4257-01 1 37346390 37346391 - G GRIK3 Frame_Shift_Ins p.H132Pfs*49 0.19 TCGA-BR-4257-01 1 3755627 3755627 T C CEP104 Silent p.E264E 0.26 TCGA-BR-4257-01 1 39900152 39900152 C T MACF1 Missense_Mutation p.R3816C 0.27 benign(0.046) TCGA-BR-4257-01 1 40724004 40724004 G - ZMPSTE24 Frame_Shift_Del p.A22Pfs*16 0.30 TCGA-BR-4257-01 1 43828822 43828822 T C CDC20 3'UTR 0.22 TCGA-BR-4257-01 1 44443642 44443642 T - ATP6V0B Intron 0.20 TCGA-BR-4257-01 1 44474178 44474178 T C SLC6A9 Missense_Mutation p.Y219C 0.21 tolerated(0.17) probably_damaging(0.975) TCGA-BR-4257-01 1 45553698 45553698 G T ZSWIM5 Silent p.S269S 0.24 TCGA-BR-4257-01 1 46073055 46073055 A - NASP Frame_Shift_Del p.T160Qfs*29 0.21 TCGA-BR-4257-01 1 47046273 47046273 G A MKNK1 Missense_Mutation p.L55F 0.28 deleterious(0) probably_damaging(0.999) TCGA-BR-4257-01 1 52551842 52551842 A G BTF3L4 Silent p.P143P 0.47 TCGA-BR-4257-01 1 53722913 53722913 G A LRP8 Silent p.H811H 0.23 TCGA-BR-4257-01 1 54554360 54554360 A G TCEANC2 Missense_Mutation p.E112G 0.19 tolerated(0.06) benign(0.297) TCGA-BR-4257-01 1 57258099 57258099 T - C1orf168 Frame_Shift_Del p.V130* 0.24 TCGA-BR-4257-01 1 57347128 57347128 C A C8A Missense_Mutation p.L159M 0.21 deleterious(0) probably_damaging(1) TCGA-BR-4257-01 1 6257785 6257785 T - RPL22 Frame_Shift_Del p.K15Rfs*5 0.46 TCGA-BR-4257-01 1 65830386 65830386 G T DNAJC6 Missense_Mutation p.G88W 0.32 deleterious(0.01) probably_damaging(1) TCGA-BR-4257-01 1 74670596 74670597 - A FPGT Frame_Shift_Ins p.I291Nfs*7 0.28 TCGA-BR-4257-01 1 78204970 78204970 T - USP33 Frame_Shift_Del p.I142Yfs*17 0.26 TCGA-BR-4257-01 1 8421436 8421436 T C RERE Missense_Mutation p.T711A 0.10 possibly_damaging(0.604) TCGA-BR-4257-01 1 84679841 84679841 A G PRKACB Silent p.R304R 0.12 TCGA-BR-4257-01 1 86590960 86590960 A G COL24A1 Silent p.T353T 0.25 TCGA-BR-4257-01 1 90049770 90049770 G A LRRC8B Missense_Mutation p.V521I 0.34 tolerated(0.07) benign(0.001) TCGA-BR-4257-01 1 90473078 90473078 C T ZNF326 Silent p.G128G 0.23 TCGA-BR-4257-01 1 92568094 92568094 A G BTBD8 Missense_Mutation p.M138V 0.47 tolerated(0.72) benign(0.001) TCGA-BR-4257-01 1 93698101 93698101 C G CCDC18 Missense_Mutation p.T857R 0.25 deleterious(0) probably_damaging(1) TCGA-BR-4257-01 1 97243163 97243163 C G PTBP2 Missense_Mutation p.A152G 0.31 tolerated(0.07) possibly_damaging(0.824) TCGA-BR-4257-01 20 14307651 14307651 T C FLRT3 Missense_Mutation p.T168A 0.35 deleterious(0.04) benign(0.008) TCGA-BR-4257-01 20 23028798 23028798 G A THBD Silent p.G448G 0.44 TCGA-BR-4257-01 20 23433415 23433415 G T CST11 Missense_Mutation p.L12M 0.44 deleterious(0.01) possibly_damaging(0.879) TCGA-BR-4257-01 20 2384126 2384126 C - TGM6 Frame_Shift_Del p.Q360Rfs*99 0.25 TCGA-BR-4257-01 20 2384384 2384384 G A TGM6 Silent p.T417T 0.19 TCGA-BR-4257-01 20 24524119 24524119 C T SYNDIG1 Missense_Mutation p.P129L 0.32 tolerated(0.09) benign(0.178) TCGA-BR-4257-01 20 25004171 25004171 C T ACSS1 Silent p.Q246Q 0.35 TCGA-BR-4257-01 20 25493618 25493618 T G NINL Missense_Mutation p.K101T 0.16 deleterious(0) probably_damaging(0.999) TCGA-BR-4257-01 20 29965051 29965051 A G DEFB118 3'Flank 0.48 TCGA-BR-4257-01 20 3025077 3025077 G A GNRH2 Missense_Mutation p.R6Q 0.26 tolerated_low_confidence(0.36) benign(0.001) TCGA-BR-4257-01 20 30617624 30617624 G A CCM2L 3'UTR 0.35 TCGA-BR-4257-01 20 30904405 30904405 A C KIF3B Missense_Mutation p.S528R 0.25 deleterious(0.01) benign(0.008) TCGA-BR-4257-01 20 3145701 3145701 C T LZTS3 Missense_Mutation p.R474H 0.36 deleterious(0) probably_damaging(0.994) TCGA-BR-4257-01 20 33577633 33577633 G A MYH7B Missense_Mutation p.A602T 0.29 benign(0.079) TCGA-BR-4257-01 20 34242562 34242562 G - RBM12 Frame_Shift_Del p.P228Qfs*8 0.20 TCGA-BR-4257-01 20 35125326 35125326 C T DLGAP4 Missense_Mutation p.R623W 0.48 deleterious(0.01) possibly_damaging(0.888) TCGA-BR-4257-01 20 36149740 36149740 G A NNAT Missense_Mutation p.A3T 0.27 deleterious_low_confidence(0.01) benign(0.116) TCGA-BR-4257-01 20 3652952 3652952 G A ADAM33 Missense_Mutation p.R476C 0.44 deleterious(0) probably_damaging(0.992) TCGA-BR-4257-01 20 3684491 3684491 G - SIGLEC1 Frame_Shift_Del p.I319Sfs*12 0.33 TCGA-BR-4257-01 20 37536802 37536802 G T PPP1R16B Missense_Mutation p.R387M 0.18 tolerated(0.13) benign(0.031) TCGA-BR-4257-01 20 37570621 37570621 A G FAM83D Missense_Mutation p.D198G 0.07 deleterious(0) probably_damaging(0.993) TCGA-BR-4257-01 20 37647462 37647462 G A DHX35 Missense_Mutation p.C473Y 0.20 deleterious(0) possibly_damaging(0.903) TCGA-BR-4257-01 20 40126803 40126803 C T CHD6 Intron 0.23 TCGA-BR-4257-01 20 4202257 4202257 T C ADRA1D Silent p.L544L 0.19 TCGA-BR-4257-01 20 43047140 43047140 G - HNF4A Frame_Shift_Del p.V242Cfs*4 0.50 TCGA-BR-4257-01 20 43535058 43535058 C T YWHAB Silent p.D240D 0.45 TCGA-BR-4257-01 20 43995543 43995543 C T SYS1 Nonsense_Mutation p.R87* 0.24 TCGA-BR-4257-01 20 48098564 48098564 C T KCNB1 Missense_Mutation p.A152T 0.53 deleterious(0.04) probably_damaging(0.998) TCGA-BR-4257-01 20 48164538 48164538 A G PTGIS Missense_Mutation p.Y73H 0.42 deleterious(0.03) benign(0.391) TCGA-BR-4257-01 20 49366959 49366959 G A PARD6B Silent p.T351T 0.34 TCGA-BR-4257-01 20 50408031 50408031 G T SALL4 Missense_Mutation p.P331T 0.15 deleterious(0.02) probably_damaging(0.999) TCGA-BR-4257-01 20 5933111 5933111 T C MCM8 Missense_Mutation p.S64P 0.25 tolerated_low_confidence(0.13) benign(0.013) TCGA-BR-4257-01 20 60737894 60737894 G A SS18L1 Missense_Mutation p.A155T 0.40 tolerated_low_confidence(0.25) benign(0.006) TCGA-BR-4257-01 20 61467685 61467685 G T COL9A3 Silent p.P516P 0.50 TCGA-BR-4257-01 20 61511012 61511012 G T DIDO1 Missense_Mutation p.P2099Q 0.46 possibly_damaging(0.536) TCGA-BR-4257-01 20 61528048 61528048 C T DIDO1 Missense_Mutation p.G630D 0.27 possibly_damaging(0.642) TCGA-BR-4257-01 20 62038661 62038661 G - KCNQ2 Frame_Shift_Del p.P652Rfs*278 0.35 TCGA-BR-4257-01 20 62421833 62421833 G A ZBTB46 Missense_Mutation p.A93V 0.38 deleterious(0) probably_damaging(0.999) TCGA-BR-4257-01 20 62858781 62858781 G A MYT1 Missense_Mutation p.G848S 0.23 possibly_damaging(0.872) TCGA-BR-4257-01 20 870947 870947 T C ANGPT4 Missense_Mutation p.Q125R 0.35 tolerated(0.05) benign(0.128) TCGA-BR-4257-01 21 16338330 16338330 T - NRIP1 Frame_Shift_Del p.E729Rfs*5 0.28 TCGA-BR-4257-01 21 19737461 19737461 T C TMPRSS15 Missense_Mutation p.I257V 0.23 deleterious(0.03) probably_damaging(0.923) TCGA-BR-4257-01 21 22849745 22849745 C T NCAM2 Missense_Mutation p.P677L 0.32 deleterious(0) probably_damaging(1) TCGA-BR-4257-01 21 27136926 27136926 C T GABPA Silent p.L322L 0.31 TCGA-BR-4257-01 21 28212698 28212698 C T ADAMTS1 Missense_Mutation p.C521Y 0.14 deleterious(0) probably_damaging(0.999) TCGA-BR-4257-01 21 28214961 28214961 G A ADAMTS1 Silent p.R258R 0.10 TCGA-BR-4257-01 21 40558989 40558989 A - BRWD1 Frame_Shift_Del p.L2309* 0.25 TCGA-BR-4257-01 21 40720231 40720231 T - HMGN1 Frame_Shift_Del p.K38Rfs*168 0.28 TCGA-BR-4257-01 21 41301089 41301089 G A PCP4 3'UTR 0.45 TCGA-BR-4257-01 21 43412000 43412000 T C ZBTB21 Silent p.L735L 0.18 TCGA-BR-4257-01 21 43508533 43508533 A G UMODL1 Missense_Mutation p.T245A 0.27 tolerated(0.94) benign(0) TCGA-BR-4257-01 21 43810131 43810131 G A TMPRSS3 Missense_Mutation p.A37V 0.44 deleterious(0.03) possibly_damaging(0.782) TCGA-BR-4257-01 21 44324217 44324217 G T NDUFV3 Missense_Mutation p.K365N 0.32 deleterious(0.04) possibly_damaging(0.812) TCGA-BR-4257-01 21 45168941 45168941 G A PDXK Silent p.T148T 0.26 TCGA-BR-4257-01 21 45741668 45741668 G A PFKL Silent p.A416A 0.28 TCGA-BR-4257-01 22 16449636 16449636 T C OR11H1 Missense_Mutation p.N57D 0.13 deleterious(0) probably_damaging(0.968) TCGA-BR-4257-01 22 17663531 17663531 T - CECR1 Frame_Shift_Del p.K401Rfs*5 0.17 TCGA-BR-4257-01 22 17978463 17978463 C T CECR2 Missense_Mutation p.R102C 0.30 deleterious(0) probably_damaging(0.959) TCGA-BR-4257-01 22 18905923 18905923 C T PRODH Missense_Mutation p.A445T 0.20 deleterious(0.03) possibly_damaging(0.752) TCGA-BR-4257-01 22 20761010 20761010 G T ZNF74 Nonsense_Mutation p.E563* 0.41 TCGA-BR-4257-01 22 23404006 23404006 G A RTDR1 Silent p.F257F 0.17 TCGA-BR-4257-01 22 24717611 24717611 G T SPECC1L Missense_Mutation p.E221D 0.34 tolerated(0.4) benign(0.11) TCGA-BR-4257-01 22 25294421 25294421 G A SGSM1 Silent p.S890S 0.22 TCGA-BR-4257-01 22 26086188 26086188 C T ADRBK2 Silent p.H330H 0.24 TCGA-BR-4257-01 22 26895229 26895229 G A TFIP11 Silent p.D390D 0.37 TCGA-BR-4257-01 22 29120963 29120963 A G CHEK2 Splice_Site p.X241_splice 0.09 TCGA-BR-4257-01 22 30780336 30780336 G T RNF215 Missense_Mutation p.Q246K 0.08 tolerated(0.07) probably_damaging(0.965) TCGA-BR-4257-01 22 32239152 32239152 G A DEPDC5 Missense_Mutation p.V854M 0.23 deleterious(0) probably_damaging(0.998) TCGA-BR-4257-01 22 33327401 33327401 G A SYN3 Silent p.V145V 0.24 TCGA-BR-4257-01 22 37914112 37914112 C T CARD10 Missense_Mutation p.R80H 0.31 tolerated(0.06) benign(0.125) TCGA-BR-4257-01 22 39141791 39141791 C T SUN2 Silent p.G258G 0.22 TCGA-BR-4257-01 22 40415244 40415244 C T FAM83F Missense_Mutation p.R188C 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-BR-4257-01 22 41173356 41173356 C T SLC25A17 Missense_Mutation p.R158H 0.23 deleterious(0.02) probably_damaging(0.932) TCGA-BR-4257-01 22 42032527 42032527 A G XRCC6 Silent p.K114K 0.32 TCGA-BR-4257-01 22 42125712 42125712 A G MEI1 Missense_Mutation p.H303R 0.15 deleterious(0.02) benign(0.168) TCGA-BR-4257-01 22 42191805 42191805 C A MEI1 Missense_Mutation p.L1245I 0.40 deleterious(0.01) benign(0.117) TCGA-BR-4257-01 22 43616498 43616498 T C SCUBE1 Missense_Mutation p.T549A 0.25 deleterious(0.05) benign(0.211) TCGA-BR-4257-01 22 45255646 45255646 C T PRR5-ARHGAP8 Nonsense_Mutation p.Q515* 0.29 TCGA-BR-4257-01 22 46319086 46319086 C T WNT7B Missense_Mutation p.A234T 0.14 tolerated(0.35) benign(0.009) TCGA-BR-4257-01 22 47073062 47073062 A G GRAMD4 Missense_Mutation p.M551V 0.18 deleterious(0.01) benign(0.05) TCGA-BR-4257-01 2 10140759 10140759 A G GRHL1 Missense_Mutation p.Y594C 0.22 deleterious(0) probably_damaging(0.999) TCGA-BR-4257-01 2 109086477 109086477 A - GCC2 Frame_Shift_Del p.N233Ifs*12 0.38 TCGA-BR-4257-01 2 109089309 109089309 A - GCC2 Frame_Shift_Del p.N940Mfs*7 0.27 TCGA-BR-4257-01 2 109300406 109300406 A C LIMS1 Missense_Mutation p.E372A 0.10 deleterious(0) unknown(0) TCGA-BR-4257-01 2 11750919 11750919 G A GREB1 Silent p.T924T 0.28 TCGA-BR-4257-01 2 120677688 120677688 A G PTPN4 Missense_Mutation p.Y291C 0.38 deleterious(0.02) probably_damaging(0.999) TCGA-BR-4257-01 2 131116512 131116512 A G PTPN18 Missense_Mutation p.N56D 0.26 tolerated(0.06) probably_damaging(0.909) TCGA-BR-4257-01 2 132509092 132509092 T - C2orf27A 5'UTR 0.38 TCGA-BR-4257-01 2 133402818 133402818 A G GPR39 Missense_Mutation p.Y334C 0.69 deleterious(0) probably_damaging(0.993) TCGA-BR-4257-01 2 137814479 137814479 C A THSD7B Missense_Mutation p.P210H 0.20 deleterious(0) probably_damaging(0.988) TCGA-BR-4257-01 2 141816614 141816614 G T LRP1B Missense_Mutation p.L416I 0.55 benign(0.013) TCGA-BR-4257-01 2 148683686 148683687 AA - ACVR2A Frame_Shift_Del p.K437Efs*19 0.21 TCGA-BR-4257-01 2 152107294 152107294 A G RBM43 3'UTR 0.42 TCGA-BR-4257-01 2 153399319 153399319 G A FMNL2 Missense_Mutation p.A90T 0.24 benign(0.113) TCGA-BR-4257-01 2 160027037 160027037 C T TANC1 Nonsense_Mutation p.R358* 0.58 TCGA-BR-4257-01 2 161157222 161157223 - T RBMS1 Frame_Shift_Ins p.C194Mfs*2 0.16 TCGA-BR-4257-01 2 164468132 164468132 T - FIGN Frame_Shift_Del p.K70Nfs*29 0.27 TCGA-BR-4257-01 2 165947618 165947618 T - SCN3A Frame_Shift_Del p.K1682Rfs*18 0.19 TCGA-BR-4257-01 2 166535659 166535659 A G CSRNP3 Missense_Mutation p.D385G 0.17 tolerated(0.19) benign(0.133) TCGA-BR-4257-01 2 168102239 168102239 A C XIRP2 Missense_Mutation p.K1446T 0.23 possibly_damaging(0.908) TCGA-BR-4257-01 2 168102522 168102522 T C XIRP2 Silent p.T1540T 0.56 TCGA-BR-4257-01 2 170897451 170897451 T - UBR3 Frame_Shift_Del p.L1540Cfs*6 0.17 TCGA-BR-4257-01 2 171376034 171376034 G A MYO3B Missense_Mutation p.V1187I 0.10 tolerated_low_confidence(0.5) benign(0) TCGA-BR-4257-01 2 171702523 171702523 A - GAD1 Frame_Shift_Del p.I319* 0.26 TCGA-BR-4257-01 2 173852994 173852994 C T RAPGEF4 Silent p.Y407Y 0.67 TCGA-BR-4257-01 2 174228609 174228609 C A CDCA7 Missense_Mutation p.P229T 0.49 tolerated(0.14) benign(0.197) TCGA-BR-4257-01 2 176972255 176972255 G A HOXD11 Missense_Mutation p.V58M 0.57 deleterious(0.02) probably_damaging(0.999) TCGA-BR-4257-01 2 178481375 178481375 A - TTC30A 3'UTR 0.36 TCGA-BR-4257-01 2 178481542 178481542 T C TTC30A Missense_Mutation p.I630V 0.43 tolerated(0.48) benign(0.005) TCGA-BR-4257-01 2 179396464 179396464 G A TTN Missense_Mutation p.R34960C 0.29 TCGA-BR-4257-01 2 179474047 179474047 T A TTN Silent p.G17330G 0.31 TCGA-BR-4257-01 2 179594261 179594261 C T TTN Missense_Mutation p.V6208M 0.20 TCGA-BR-4257-01 2 185801763 185801763 G A ZNF804A Missense_Mutation p.R547K 0.12 tolerated(1) benign(0.002) TCGA-BR-4257-01 2 186673635 186673635 A - FSIP2 Frame_Shift_Del p.I6625Lfs*6 0.22 TCGA-BR-4257-01 2 189861201 189861201 C - COL3A1 Frame_Shift_Del p.G582Vfs*209 0.40 TCGA-BR-4257-01 2 201846082 201846082 C T FAM126B Missense_Mutation p.E502K 0.15 deleterious(0.03) benign(0.035) TCGA-BR-4257-01 2 20194089 20194089 C A MATN3 Missense_Mutation p.S459I 0.18 deleterious_low_confidence(0.04) benign(0.026) TCGA-BR-4257-01 2 203420130 203420130 A - BMPR2 Frame_Shift_Del p.N583Tfs*44 0.40 TCGA-BR-4257-01 2 203420873 203420873 A G BMPR2 Missense_Mutation p.T829A 0.22 tolerated(0.89) benign(0) TCGA-BR-4257-01 2 206592721 206592721 G A NRP2 Missense_Mutation p.S366N 0.27 deleterious(0) probably_damaging(0.996) TCGA-BR-4257-01 2 207171007 207171007 T C ZDBF2 Silent p.C585C 0.21 TCGA-BR-4257-01 2 207171142 207171142 C A ZDBF2 Silent p.V630V 0.36 TCGA-BR-4257-01 2 210518129 210518129 C T MAP2 Silent p.L79L 0.60 TCGA-BR-4257-01 2 211082788 211082788 T C ACADL Missense_Mutation p.E91G 0.27 tolerated(0.3) benign(0.033) TCGA-BR-4257-01 2 212288922 212288922 G A ERBB4 Missense_Mutation p.P942S 0.18 deleterious(0) probably_damaging(0.999) TCGA-BR-4257-01 2 212652859 212652859 T C ERBB4 Silent p.V149V 0.38 TCGA-BR-4257-01 2 216253000 216253000 A G FN1 Missense_Mutation p.V1426A 0.12 tolerated(0.2) benign(0.11) TCGA-BR-4257-01 2 218925669 218925669 G A CXCR2P1 RNA 0.19 TCGA-BR-4257-01 2 219134766 219134766 G - AAMP Frame_Shift_Del p.P15Hfs*5 0.44 TCGA-BR-4257-01 2 219140311 219140312 - C TMBIM1 Frame_Shift_Ins p.N275Efs*55 0.16 TCGA-BR-4257-01 2 219689020 219689020 T C PRKAG3 Silent p.L426L 0.22 TCGA-BR-4257-01 2 220333707 220333707 G A SPEG Missense_Mutation p.G1143D 0.29 probably_damaging(1) TCGA-BR-4257-01 2 220353849 220353849 C T SPEG Silent p.G2741G 0.18 TCGA-BR-4257-01 2 220366621 220366621 T - GMPPA Frame_Shift_Del p.R99Efs*25 0.13 TCGA-BR-4257-01 2 220497729 220497729 C - SLC4A3 Frame_Shift_Del p.H452Qfs*22 0.65 TCGA-BR-4257-01 2 223478636 223478636 A G FARSB Silent p.T452T 0.16 TCGA-BR-4257-01 2 225729790 225729790 A - DOCK10 Frame_Shift_Del p.F424Lfs*2 0.42 TCGA-BR-4257-01 2 227892635 227892635 C A COL4A4 Missense_Mutation p.G1355V 0.48 unknown(0) TCGA-BR-4257-01 2 231042314 231042314 G A SP110 Silent p.N510N 0.21 TCGA-BR-4257-01 2 233243931 233243931 C T ALPP Missense_Mutation p.T72I 0.20 deleterious(0) probably_damaging(0.98) TCGA-BR-4257-01 2 233245422 233245422 C T ALPP Missense_Mutation p.R319C 0.09 deleterious(0.01) benign(0.089) TCGA-BR-4257-01 2 233671202 233671202 T C GIGYF2 Silent p.G568G 0.15 TCGA-BR-4257-01 2 238289897 238289897 C T COL6A3 Missense_Mutation p.G520S 0.46 probably_damaging(0.972) TCGA-BR-4257-01 2 241496621 241496621 A G ANKMY1 5'UTR 0.46 TCGA-BR-4257-01 2 241516115 241516115 C T RNPEPL1 Silent p.S327S 0.52 TCGA-BR-4257-01 2 241622123 241622123 C T AQP12B Silent p.A44A 0.38 TCGA-BR-4257-01 2 242187691 242187691 G C HDLBP Missense_Mutation p.R529G 0.09 deleterious(0.03) benign(0.026) TCGA-BR-4257-01 2 24247037 24247037 C T MFSD2B Silent p.G462G 0.58 TCGA-BR-4257-01 2 24483988 24483988 G T ITSN2 Missense_Mutation p.P890H 0.25 deleterious(0) unknown(0) TCGA-BR-4257-01 2 25965740 25965741 - G ASXL2 Frame_Shift_Ins p.T1156Hfs*2 0.25 TCGA-BR-4257-01 2 26683555 26683555 C A OTOF Missense_Mutation p.G1925C 0.46 deleterious(0) probably_damaging(1) TCGA-BR-4257-01 2 27305118 27305118 G A EMILIN1 Missense_Mutation p.A227T 0.25 probably_damaging(0.983) TCGA-BR-4257-01 2 27683894 27683894 C T IFT172 Missense_Mutation p.A837T 0.31 deleterious(0.03) benign(0.134) TCGA-BR-4257-01 2 31560626 31560626 C T XDH Missense_Mutation p.A1278T 0.30 deleterious(0) probably_damaging(1) TCGA-BR-4257-01 2 33623607 33623607 G A LTBP1 Missense_Mutation p.E1721K 0.62 deleterious_low_confidence(0) benign(0.219) TCGA-BR-4257-01 2 33623699 33623699 A G LTBP1 3'UTR 0.53 TCGA-BR-4257-01 2 37414553 37414553 T - SULT6B1 Frame_Shift_Del p.K48Sfs*21 0.39 TCGA-BR-4257-01 2 37872829 37872829 A - CDC42EP3 3'UTR 0.33 TCGA-BR-4257-01 2 37873728 37873728 C A CDC42EP3 Translation_Start_Site p.M1? 0.25 deleterious(0) probably_damaging(0.985) TCGA-BR-4257-01 2 45169338 45169338 G A SIX3 Missense_Mutation p.S32N 0.30 tolerated_low_confidence(0.53) benign(0.213) TCGA-BR-4257-01 2 47705414 47705414 T C MSH2 Silent p.S738S 0.23 TCGA-BR-4257-01 2 48915172 48915172 A - LHCGR Frame_Shift_Del p.F588Lfs*14 0.20 TCGA-BR-4257-01 2 55252334 55252334 T C RTN4 Missense_Mutation p.I967M 0.27 deleterious(0) possibly_damaging(0.595) TCGA-BR-4257-01 2 5833022 5833022 A G SOX11 Missense_Mutation p.M57V 0.29 deleterious(0) probably_damaging(0.981) TCGA-BR-4257-01 2 64322041 64322041 G A PELI1 Missense_Mutation p.A351V 0.21 deleterious(0.02) possibly_damaging(0.493) TCGA-BR-4257-01 2 65296924 65296924 G A CEP68 Missense_Mutation p.G116R 0.27 tolerated(0.16) benign(0.423) TCGA-BR-4257-01 2 68361749 68361749 A - WDR92 Intron 0.62 TCGA-BR-4257-01 2 68691329 68691329 T - FBXO48 3'UTR 0.25 TCGA-BR-4257-01 2 70315822 70315822 C T PCBP1 Missense_Mutation p.A316V 0.31 deleterious(0) probably_damaging(0.909) TCGA-BR-4257-01 2 70377539 70377539 G - C2orf42 Frame_Shift_Del p.L559Wfs*10 0.18 TCGA-BR-4257-01 2 71189997 71189997 G A ATP6V1B1 Silent p.T292T 0.22 TCGA-BR-4257-01 2 71629145 71629147 AGA - ZNF638 In_Frame_Del p.E921del 0.68 TCGA-BR-4257-01 2 72371262 72371262 G A CYP26B1 Silent p.R95R 0.30 TCGA-BR-4257-01 2 73160979 73160979 C T EMX1 Missense_Mutation p.P257S 0.12 tolerated(0.35) benign(0.357) TCGA-BR-4257-01 2 85628347 85628347 G A CAPG Missense_Mutation p.R153W 0.17 deleterious(0) probably_damaging(0.983) TCGA-BR-4257-01 2 86831891 86831891 A - RNF103 Frame_Shift_Del p.L378Yfs*6 0.32 TCGA-BR-4257-01 2 88890059 88890059 A T EIF2AK3 Missense_Mutation p.F356Y 0.38 deleterious(0.01) possibly_damaging(0.901) TCGA-BR-4257-01 2 96789597 96789597 C T ASTL Missense_Mutation p.E430K 0.53 tolerated_low_confidence(0.39) benign(0) TCGA-BR-4257-01 2 96798442 96798442 C T ASTL Silent p.G158G 0.22 TCGA-BR-4257-01 2 96945296 96945296 A G SNRNP200 Missense_Mutation p.Y1676H 0.12 tolerated(0.17) probably_damaging(0.998) TCGA-BR-4257-01 2 97514112 97514112 G A ANKRD39 Missense_Mutation p.R160W 0.12 deleterious(0.01) probably_damaging(0.958) TCGA-BR-4257-01 2 97858783 97858783 T C ANKRD36 Silent p.S814S 0.62 TCGA-BR-4257-01 2 99688288 99688288 G A TSGA10 Missense_Mutation p.R330C 0.65 deleterious(0.04) benign(0.092) TCGA-BR-4257-01 3 100020962 100020962 G A TBC1D23 Missense_Mutation p.A382T 0.28 tolerated(0.15) benign(0.194) TCGA-BR-4257-01 3 101070484 101070484 T - SENP7 Frame_Shift_Del p.K545Nfs*11 0.35 TCGA-BR-4257-01 3 10346789 10346789 A C SEC13 Missense_Mutation p.S212R 0.16 deleterious(0.03) benign(0.294) TCGA-BR-4257-01 3 10382234 10382234 G A ATP2B2 Silent p.D1024D 0.22 TCGA-BR-4257-01 3 10387133 10387133 G A ATP2B2 Nonsense_Mutation p.Q880* 0.19 TCGA-BR-4257-01 3 108751611 108751611 A - MORC1 Frame_Shift_Del p.F507Lfs*20 0.19 TCGA-BR-4257-01 3 111312782 111312782 A C ZBED2 Silent p.P89P 0.26 TCGA-BR-4257-01 3 111564673 111564673 C T PLCXD2 3'UTR 0.07 TCGA-BR-4257-01 3 111921157 111921157 T C SLC9C1 Silent p.Q754Q 0.24 TCGA-BR-4257-01 3 113376559 113376559 G A KIAA2018 Missense_Mutation p.R1324C 0.23 probably_damaging(0.999) TCGA-BR-4257-01 3 113795686 113795686 G T QTRTD1 Missense_Mutation p.G227C 0.28 deleterious(0.01) benign(0.126) TCGA-BR-4257-01 3 118922846 118922846 C T UPK1B 3'UTR 0.18 TCGA-BR-4257-01 3 121248525 121248525 G A POLQ Nonsense_Mutation p.R359* 0.23 TCGA-BR-4257-01 3 122133340 122133341 - T WDR5B 3'UTR 0.18 TCGA-BR-4257-01 3 122288531 122288531 G A DTX3L Missense_Mutation p.S532N 0.20 tolerated(0.13) possibly_damaging(0.536) TCGA-BR-4257-01 3 122289427 122289427 T C DTX3L Silent p.F687F 0.27 TCGA-BR-4257-01 3 124215203 124215203 A G KALRN Silent p.Q1624Q 0.22 TCGA-BR-4257-01 3 124731892 124731892 G A HEG1 Missense_Mutation p.T844I 0.09 tolerated(0.1) benign(0.09) TCGA-BR-4257-01 3 124953119 124953119 T G ZNF148 Missense_Mutation p.H241P 0.25 deleterious(0) possibly_damaging(0.607) TCGA-BR-4257-01 3 126180390 126180390 G A ZXDC Silent p.G705G 0.26 TCGA-BR-4257-01 3 126219539 126219539 T A UROC1 Missense_Mutation p.S442C 0.24 deleterious(0.01) probably_damaging(0.998) TCGA-BR-4257-01 3 126220661 126220661 A C UROC1 Missense_Mutation p.F345V 0.38 tolerated(0.36) benign(0) TCGA-BR-4257-01 3 126226620 126226620 C T UROC1 Silent p.T189T 0.22 TCGA-BR-4257-01 3 127806584 127806584 G A RUVBL1 Missense_Mutation p.R362W 0.25 deleterious(0) probably_damaging(0.975) TCGA-BR-4257-01 3 128757721 128757721 C T EFCC1 Silent p.D546D 0.34 TCGA-BR-4257-01 3 129233274 129233274 T C IFT122 Silent p.G1061G 0.10 TCGA-BR-4257-01 3 129281738 129281738 G A PLXND1 Missense_Mutation p.R1573W 0.35 deleterious(0) probably_damaging(0.999) TCGA-BR-4257-01 3 129292568 129292568 C T PLXND1 Silent p.P902P 0.25 TCGA-BR-4257-01 3 130187927 130187927 A T COL6A5 Missense_Mutation p.D2360V 0.10 deleterious(0) probably_damaging(0.979) TCGA-BR-4257-01 3 130292809 130292809 T A COL6A6 Missense_Mutation p.I996N 0.29 deleterious(0) probably_damaging(0.914) TCGA-BR-4257-01 3 130307997 130307997 A G COL6A6 Missense_Mutation p.M1397V 0.24 tolerated(0.52) benign(0.002) TCGA-BR-4257-01 3 130345329 130345329 G T COL6A6 Nonsense_Mutation p.G1627* 0.17 TCGA-BR-4257-01 3 132438596 132438597 CT - NPHP3 Frame_Shift_Del p.R157Sfs*5 0.21 TCGA-BR-4257-01 3 13383334 13383334 C T NUP210 Missense_Mutation p.G1048S 0.17 deleterious(0.02) probably_damaging(0.998) TCGA-BR-4257-01 3 134076516 134076516 A G AMOTL2 3'UTR 0.28 TCGA-BR-4257-01 3 134851736 134851736 C T EPHB1 Missense_Mutation p.P381L 0.18 deleterious(0.01) probably_damaging(0.973) TCGA-BR-4257-01 3 136573858 136573858 T - SLC35G2 Frame_Shift_Del p.S187Qfs*2 0.12 TCGA-BR-4257-01 3 138417775 138417775 A G PIK3CB Missense_Mutation p.W582R 0.20 deleterious(0) probably_damaging(0.997) TCGA-BR-4257-01 3 141457324 141457324 C T RNF7 Silent p.C47C 0.20 TCGA-BR-4257-01 3 142051906 142051906 A - XRN1 Frame_Shift_Del p.L1322* 0.21 TCGA-BR-4257-01 3 14744763 14744763 G A C3orf20 Missense_Mutation p.R291H 0.25 tolerated(0.07) possibly_damaging(0.686) TCGA-BR-4257-01 3 148897376 148897376 T C CP Silent p.P876P 0.11 TCGA-BR-4257-01 3 14939591 14939591 C T FGD5 Missense_Mutation p.R1019C 0.20 deleterious(0.03) benign(0.108) TCGA-BR-4257-01 3 150387183 150387183 T C FAM194A Missense_Mutation p.T467A 0.30 tolerated(0.21) possibly_damaging(0.456) TCGA-BR-4257-01 3 154011567 154011567 A T DHX36 Missense_Mutation p.I547K 0.19 deleterious(0) probably_damaging(0.999) TCGA-BR-4257-01 3 158310241 158310241 C T MLF1 Silent p.H38H 0.21 TCGA-BR-4257-01 3 158310320 158310320 G T MLF1 Missense_Mutation p.G65W 0.19 deleterious(0.01) probably_damaging(0.95) TCGA-BR-4257-01 3 167250683 167250683 C A WDR49 Missense_Mutation p.L327F 0.16 tolerated(0.4) possibly_damaging(0.45) TCGA-BR-4257-01 3 170727811 170727811 A G SLC2A2 Silent p.F144F 0.16 TCGA-BR-4257-01 3 171405375 171405378 CTGA GCGGG PLD1 Splice_Site p.X514_splice 0.13 TCGA-BR-4257-01 3 172486914 172486914 T C ECT2 Missense_Mutation p.I470T 0.12 deleterious(0) probably_damaging(0.948) TCGA-BR-4257-01 3 182988627 182988627 T - B3GNT5 Frame_Shift_Del p.F349Lfs*8 0.13 TCGA-BR-4257-01 3 185636197 185636197 C T TRA2B Missense_Mutation p.R271H 0.16 tolerated_low_confidence(0.17) unknown(0) TCGA-BR-4257-01 3 186953694 186953694 G A MASP1 Silent p.G655G 0.17 TCGA-BR-4257-01 3 186974645 186974645 T G MASP1 Missense_Mutation p.E184A 0.30 deleterious(0.03) possibly_damaging(0.533) TCGA-BR-4257-01 3 189526151 189526151 G A TP63 Missense_Mutation p.A139T 0.20 tolerated(0.4) benign(0.004) TCGA-BR-4257-01 3 190127802 190127802 T C CLDN16 Missense_Mutation p.Y299H 0.12 deleterious(0) probably_damaging(0.994) TCGA-BR-4257-01 3 196435397 196435397 A G CEP19 Splice_Site p.X48_splice 0.19 TCGA-BR-4257-01 3 196867105 196867105 C A DLG1 Nonsense_Mutation p.G240* 0.15 TCGA-BR-4257-01 3 25502773 25502773 G A RARB Missense_Mutation p.V83I 0.26 deleterious(0) probably_damaging(0.984) TCGA-BR-4257-01 3 25665821 25665821 G A TOP2B Missense_Mutation p.A816V 0.18 deleterious(0.01) possibly_damaging(0.644) TCGA-BR-4257-01 3 25900239 25900239 G A LINC00692 Missense_Mutation p.R92C 0.19 deleterious_low_confidence(0.03) possibly_damaging(0.833) TCGA-BR-4257-01 3 26751789 26751789 C T LRRC3B Missense_Mutation p.T209I 0.21 deleterious(0) possibly_damaging(0.727) TCGA-BR-4257-01 3 27453218 27453218 A G SLC4A7 Missense_Mutation p.F552L 0.22 tolerated(0.66) benign(0.018) TCGA-BR-4257-01 3 27463207 27463207 C T SLC4A7 Missense_Mutation p.E435K 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-BR-4257-01 3 32769301 32769301 A G CNOT10 Missense_Mutation p.Y445C 0.19 deleterious(0) probably_damaging(0.991) TCGA-BR-4257-01 3 32800967 32800967 G A CNOT10 Missense_Mutation p.C598Y 0.16 deleterious(0) probably_damaging(0.994) TCGA-BR-4257-01 3 33134737 33134737 A G TMPPE Silent p.G317G 0.15 TCGA-BR-4257-01 3 33165913 33165913 G A CRTAP Missense_Mutation p.R212Q 0.19 tolerated(0.06) benign(0.062) TCGA-BR-4257-01 3 33194480 33194480 C T SUSD5 Silent p.G548G 0.41 TCGA-BR-4257-01 3 36485023 36485023 G A STAC Silent p.T93T 0.26 TCGA-BR-4257-01 3 36897095 36897095 T G TRANK1 Missense_Mutation p.Y1329S 0.25 deleterious(0) probably_damaging(1) TCGA-BR-4257-01 3 38519934 38519934 T C ACVR2B Silent p.A197A 0.24 TCGA-BR-4257-01 3 38802798 38802798 G A SCN10A Silent p.C256C 0.12 TCGA-BR-4257-01 3 3886509 3886509 C T LRRN1 Missense_Mutation p.R62C 0.27 tolerated(0.18) possibly_damaging(0.586) TCGA-BR-4257-01 3 42734238 42734238 C A HHATL 3'UTR 0.20 TCGA-BR-4257-01 3 43121686 43121686 C - POMGNT2 Frame_Shift_Del p.G413Afs*53 0.21 TCGA-BR-4257-01 3 43389492 43389492 G A SNRK Missense_Mutation p.G581R 0.16 deleterious_low_confidence(0.01) benign(0.357) TCGA-BR-4257-01 3 46399085 46399085 T - CCR2 Frame_Shift_Del p.F24Lfs*14 0.15 TCGA-BR-4257-01 3 47537600 47537600 C T ELP6 Missense_Mutation p.V254M 0.17 deleterious(0) probably_damaging(0.968) TCGA-BR-4257-01 3 48459755 48459755 A G PLXNB1 Missense_Mutation p.S1023P 0.29 deleterious(0) possibly_damaging(0.609) TCGA-BR-4257-01 3 48628013 48628013 C T COL7A1 Silent p.P595P 0.54 TCGA-BR-4257-01 3 48630677 48630677 A G COL7A1 Silent p.P180P 0.18 TCGA-BR-4257-01 3 49038942 49038942 C T P4HTM Missense_Mutation p.R170C 0.24 deleterious(0.02) probably_damaging(0.978) TCGA-BR-4257-01 3 49051263 49051263 G A WDR6 Missense_Mutation p.A796T 0.24 tolerated(0.44) benign(0.057) TCGA-BR-4257-01 3 49693858 49693858 C T BSN Missense_Mutation p.A2290V 0.30 unknown(0) TCGA-BR-4257-01 3 49721545 49721545 T C MST1 Silent p.V698V 0.13 TCGA-BR-4257-01 3 49756812 49756812 A G AMIGO3 Silent p.R29R 0.28 TCGA-BR-4257-01 3 52003908 52003908 C T ABHD14B Intron 0.24 TCGA-BR-4257-01 3 52443885 52443885 C A BAP1 Missense_Mutation p.G4C 0.13 deleterious(0) probably_damaging(0.996) TCGA-BR-4257-01 3 5244713 5244713 T C EDEM1 Silent p.G307G 0.24 TCGA-BR-4257-01 3 52472110 52472110 A G SEMA3G Missense_Mutation p.Y539H 0.12 deleterious(0.01) possibly_damaging(0.861) TCGA-BR-4257-01 3 52491918 52491918 C T NISCH Silent p.S51S 0.41 TCGA-BR-4257-01 3 52522418 52522418 C T NISCH Silent p.H970H 0.19 TCGA-BR-4257-01 3 52797501 52797501 A - NEK4 Frame_Shift_Del p.L269Wfs*6 0.19 TCGA-BR-4257-01 3 58183580 58183580 C T DNASE1L3 Silent p.T224T 0.24 TCGA-BR-4257-01 3 58303263 58303264 AT - RPP14 3'UTR 0.27 TCGA-BR-4257-01 3 58516206 58516206 G A ACOX2 Missense_Mutation p.R327W 0.31 deleterious(0) benign(0.339) TCGA-BR-4257-01 3 58728112 58728112 G A C3orf67 3'UTR 0.29 TCGA-BR-4257-01 3 62358299 62358299 T A FEZF2 Missense_Mutation p.E82V 0.24 deleterious(0) possibly_damaging(0.788) TCGA-BR-4257-01 3 67568743 67568743 A G SUCLG2 Silent p.F196F 0.16 TCGA-BR-4257-01 3 69171388 69171388 C A LMOD3 Silent p.V50V 0.26 TCGA-BR-4257-01 3 73433392 73433392 G A PDZRN3 Silent p.P775P 0.17 TCGA-BR-4257-01 3 77684125 77684125 A - ROBO2 Frame_Shift_Del p.K1306Nfs*20 0.16 TCGA-BR-4257-01 3 78663931 78663931 C T ROBO1 Silent p.A1434A 0.32 TCGA-BR-4257-01 3 87322591 87322591 C T POU1F1 Silent p.S66S 0.16 TCGA-BR-4257-01 3 98073327 98073327 C T OR5K4 Silent p.T210T 0.14 TCGA-BR-4257-01 3 98110293 98110293 G A OR5K3 Missense_Mutation p.A262T 0.25 deleterious(0.02) benign(0.014) TCGA-BR-4257-01 3 9822157 9822157 A C TADA3 Missense_Mutation p.F395V 0.17 deleterious(0.01) possibly_damaging(0.88) TCGA-BR-4257-01 3 98510829 98510829 A T ST3GAL6 Missense_Mutation p.M301L 0.22 deleterious(0) probably_damaging(0.962) TCGA-BR-4257-01 4 106746920 106746920 C T GSTCD Missense_Mutation p.A498V 0.12 deleterious(0.01) probably_damaging(0.972) TCGA-BR-4257-01 4 107170076 107170076 A G TBCK Splice_Site p.X240_splice 0.40 TCGA-BR-4257-01 4 110667573 110667573 C T CFI Missense_Mutation p.V412M 0.27 deleterious(0) probably_damaging(0.963) TCGA-BR-4257-01 4 120177654 120177654 G A USP53 Missense_Mutation p.R182Q 0.21 deleterious(0.02) possibly_damaging(0.861) TCGA-BR-4257-01 4 120419827 120419827 A G PDE5A Missense_Mutation p.W853R 0.20 deleterious(0) probably_damaging(1) TCGA-BR-4257-01 4 120484020 120484020 A G PDE5A Missense_Mutation p.C367R 0.42 deleterious(0) probably_damaging(1) TCGA-BR-4257-01 4 123227177 123227177 C T KIAA1109 Missense_Mutation p.A3273V 0.22 probably_damaging(0.993) TCGA-BR-4257-01 4 126373243 126373243 G T FAT4 Missense_Mutation p.S3691I 0.27 possibly_damaging(0.451) TCGA-BR-4257-01 4 128861148 128861148 A - MFSD8 Frame_Shift_Del p.Q187Rfs*12 0.27 TCGA-BR-4257-01 4 134071765 134071765 G A PCDH10 Missense_Mutation p.R157H 0.30 tolerated(0.15) possibly_damaging(0.853) TCGA-BR-4257-01 4 140811854 140811854 T C MAML3 Missense_Mutation p.N246D 0.19 probably_damaging(0.993) TCGA-BR-4257-01 4 152024153 152024153 G A RPS3A Missense_Mutation p.R162H 0.28 tolerated(0.27) benign(0.004) TCGA-BR-4257-01 4 152212409 152212409 C T PRSS48 Missense_Mutation p.A264V 0.25 tolerated(0.12) benign(0.367) TCGA-BR-4257-01 4 153864507 153864507 T - FHDC1 Frame_Shift_Del p.W102Gfs*55 0.25 TCGA-BR-4257-01 4 15642413 15642413 C A FBXL5 Nonsense_Mutation p.E132* 0.08 TCGA-BR-4257-01 4 159092437 159092437 G A FAM198B Missense_Mutation p.R31C 0.39 tolerated(0.15) possibly_damaging(0.835) TCGA-BR-4257-01 4 160274685 160274685 A G RAPGEF2 Missense_Mutation p.T1219A 0.09 tolerated_low_confidence(0.46) benign(0.006) TCGA-BR-4257-01 4 166232663 166232663 C A KLHL2 Missense_Mutation p.H433N 0.25 tolerated(0.31) benign(0.004) TCGA-BR-4257-01 4 169433418 169433418 C T PALLD Missense_Mutation p.R255C 0.24 tolerated(0.07) benign(0) TCGA-BR-4257-01 4 171009703 171009703 C T AADAT Missense_Mutation p.S27N 0.21 tolerated(0.69) benign(0) TCGA-BR-4257-01 4 173942662 173942662 C T GALNTL6 Silent p.P508P 0.27 TCGA-BR-4257-01 4 184930482 184930482 T A STOX2 Missense_Mutation p.I164K 0.31 tolerated(0.12) benign(0.058) TCGA-BR-4257-01 4 185329341 185329341 T - IRF2 Frame_Shift_Del p.N167Mfs*7 0.19 TCGA-BR-4257-01 4 185339859 185339859 T G IRF2 Missense_Mutation p.K64T 0.24 deleterious(0) probably_damaging(0.996) TCGA-BR-4257-01 4 187540301 187540301 A G FAT1 Missense_Mutation p.V2480A 0.06 possibly_damaging(0.73) TCGA-BR-4257-01 4 2339147 2339147 C T ZFYVE28 Missense_Mutation p.E200K 0.58 deleterious(0) probably_damaging(0.985) TCGA-BR-4257-01 4 26431567 26431567 C T RBPJ Silent p.G325G 0.22 TCGA-BR-4257-01 4 3319285 3319285 G - RGS12 Frame_Shift_Del p.G464Vfs*35 0.31 TCGA-BR-4257-01 4 36231150 36231150 C T ARAP2 5'UTR 0.36 TCGA-BR-4257-01 4 40122061 40122061 A - N4BP2 Frame_Shift_Del p.K778Sfs*50 0.20 TCGA-BR-4257-01 4 41749473 41749473 C A PHOX2B Missense_Mutation p.A108S 0.24 tolerated(0.52) probably_damaging(0.996) TCGA-BR-4257-01 4 42445639 42445639 A - ATP8A1 Frame_Shift_Del p.F1022Lfs*82 0.31 TCGA-BR-4257-01 4 42580304 42580304 T C ATP8A1 Silent p.K367K 0.24 TCGA-BR-4257-01 4 48545976 48545976 G T FRYL Missense_Mutation p.L1814M 0.23 deleterious(0) probably_damaging(1) TCGA-BR-4257-01 4 48859372 48859372 A - OCIAD1 Frame_Shift_Del p.E233Kfs*4 0.26 TCGA-BR-4257-01 4 52917801 52917801 C A SPATA18 5'UTR 0.35 TCGA-BR-4257-01 4 53492381 53492381 T C USP46 Missense_Mutation p.H122R 0.32 deleterious(0) probably_damaging(0.997) TCGA-BR-4257-01 4 56471505 56471505 C T NMU Silent p.V124V 0.28 TCGA-BR-4257-01 4 5720985 5720985 C T EVC Missense_Mutation p.T62I 0.27 deleterious(0.01) benign(0.219) TCGA-BR-4257-01 4 628573 628573 A C PDE6B Silent p.A192A 0.22 TCGA-BR-4257-01 4 68492086 68492086 G A UBA6 Missense_Mutation p.A837V 0.32 tolerated(0.34) benign(0.003) TCGA-BR-4257-01 4 7064112 7064112 C T GRPEL1 Missense_Mutation p.G103S 0.31 tolerated(0.05) possibly_damaging(0.627) TCGA-BR-4257-01 4 70723269 70723269 C T SULT1E1 Missense_Mutation p.A32T 0.23 tolerated(0.49) benign(0.002) TCGA-BR-4257-01 4 71346558 71346558 A C MUC7 Silent p.R33R 0.23 TCGA-BR-4257-01 4 74719777 74719777 A T PF4V1 Missense_Mutation p.I85F 0.24 deleterious(0.02) probably_damaging(0.973) TCGA-BR-4257-01 4 76570792 76570792 C A G3BP2 Missense_Mutation p.R424L 0.22 deleterious(0) probably_damaging(0.985) TCGA-BR-4257-01 4 76797721 76797721 A G PPEF2 Missense_Mutation p.F347L 0.24 tolerated(0.53) benign(0.022) TCGA-BR-4257-01 4 7776640 7776640 A - AFAP1 Intron 0.30 TCGA-BR-4257-01 4 78641571 78641571 G A CNOT6L 3'UTR 0.27 TCGA-BR-4257-01 4 82377784 82377784 C T RASGEF1B Intron 0.14 TCGA-BR-4257-01 4 84029099 84029099 G A PLAC8 5'UTR 0.33 TCGA-BR-4257-01 4 95496980 95496980 G A PDLIM5 Intron 0.34 TCGA-BR-4257-01 5 106763016 106763016 G A EFNA5 Missense_Mutation p.S107F 0.25 deleterious(0) probably_damaging(0.992) TCGA-BR-4257-01 5 1081765 1081765 T C SLC12A7 Silent p.A408A 0.28 TCGA-BR-4257-01 5 111575375 111575375 C T EPB41L4A Missense_Mutation p.R316H 0.32 tolerated(0.1) benign(0.104) TCGA-BR-4257-01 5 111576502 111576502 G A EPB41L4A Silent p.N267N 0.33 TCGA-BR-4257-01 5 113698843 113698843 G A KCNN2 Missense_Mutation p.R124Q 0.60 deleterious(0) possibly_damaging(0.863) TCGA-BR-4257-01 5 114916761 114916761 C T TMED7-TICAM2 Missense_Mutation p.V234M 0.22 tolerated_low_confidence(0.15) benign(0.014) TCGA-BR-4257-01 5 118445967 118445967 T C DMXL1 Silent p.I162I 0.24 TCGA-BR-4257-01 5 118792054 118792054 T C HSD17B4 Missense_Mutation p.V38A 0.23 deleterious_low_confidence(0.01) benign(0.003) TCGA-BR-4257-01 5 121409818 121409818 C T LOX Missense_Mutation p.A309T 0.33 tolerated(0.06) benign(0.206) TCGA-BR-4257-01 5 131944382 131944382 A - RAD50 Frame_Shift_Del p.N934Ifs*6 0.35 TCGA-BR-4257-01 5 131972826 131972826 A G RAD50 Missense_Mutation p.S1137G 0.23 tolerated(0.14) benign(0.008) TCGA-BR-4257-01 5 132232456 132232456 T C AFF4 Silent p.R622R 0.15 TCGA-BR-4257-01 5 1334411 1334411 G A CLPTM1L Missense_Mutation p.A295V 0.34 tolerated(0.06) possibly_damaging(0.687) TCGA-BR-4257-01 5 135510101 135510101 C T SMAD5 Missense_Mutation p.A345V 0.22 tolerated(0.05) benign(0.354) TCGA-BR-4257-01 5 135692700 135692700 G A TRPC7 Missense_Mutation p.L126F 0.16 deleterious(0) probably_damaging(0.996) TCGA-BR-4257-01 5 137717276 137717276 C T KDM3B Silent p.S259S 0.34 TCGA-BR-4257-01 5 140024251 140024251 C T TMCO6 Silent p.L432L 0.06 TCGA-BR-4257-01 5 140165915 140165915 C A PCDHA1 Missense_Mutation p.L14M 0.27 deleterious_low_confidence(0.02) possibly_damaging(0.647) TCGA-BR-4257-01 5 140181913 140181913 C T PCDHA3 Silent p.R377R 0.21 TCGA-BR-4257-01 5 140188818 140188818 G A PCDHA4 Silent p.A682A 0.38 TCGA-BR-4257-01 5 140215781 140215781 G A PCDHA7 Missense_Mutation p.A605T 0.25 deleterious_low_confidence(0.02) probably_damaging(0.915) TCGA-BR-4257-01 5 140229616 140229616 G A PCDHA9 Silent p.A512A 0.13 TCGA-BR-4257-01 5 140236079 140236079 C A PCDHA10 Missense_Mutation p.S149Y 0.27 deleterious_low_confidence(0) probably_damaging(0.928) TCGA-BR-4257-01 5 140249397 140249397 G A PCDHA11 Missense_Mutation p.D237N 0.46 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BR-4257-01 5 140262322 140262322 G A PCDHA13 Missense_Mutation p.A157T 0.33 deleterious_low_confidence(0) probably_damaging(1) TCGA-BR-4257-01 5 140516378 140516378 C A PCDHB5 Silent p.S454S 0.24 TCGA-BR-4257-01 5 140581504 140581504 G A PCDHB11 Silent p.A719A 0.18 TCGA-BR-4257-01 5 140626516 140626516 C T PCDHB15 Missense_Mutation p.T457I 0.23 deleterious_low_confidence(0.02) benign(0.098) TCGA-BR-4257-01 5 140735488 140735488 G A PCDHGA4 Missense_Mutation p.V241M 0.50 deleterious_low_confidence(0.03) benign(0.363) TCGA-BR-4257-01 5 140794590 140794590 C T PCDHGA10 Silent p.S616S 0.35 TCGA-BR-4257-01 5 140794641 140794641 G C PCDHGA10 Silent p.A633A 0.33 TCGA-BR-4257-01 5 140801363 140801363 C T PCDHGA11 Missense_Mutation p.A190V 0.43 tolerated_low_confidence(0.33) benign(0.004) TCGA-BR-4257-01 5 140856231 140856231 G A PCDHGC3 Missense_Mutation p.R183H 0.32 tolerated(0.1) possibly_damaging(0.677) TCGA-BR-4257-01 5 140896555 140896555 C T DIAPH1 Missense_Mutation p.A1228T 0.21 possibly_damaging(0.776) TCGA-BR-4257-01 5 141336022 141336022 A G PCDH12 Silent p.Y465Y 0.20 TCGA-BR-4257-01 5 141384619 141384619 G A GNPDA1 Missense_Mutation p.R158C 0.25 deleterious(0) possibly_damaging(0.728) TCGA-BR-4257-01 5 14711209 14711209 A - ANKH 3'UTR 0.30 TCGA-BR-4257-01 5 148207339 148207339 C T ADRB2 Silent p.G315G 0.27 TCGA-BR-4257-01 5 148699169 148699169 C T AFAP1L1 Missense_Mutation p.R502C 0.31 deleterious(0) probably_damaging(0.993) TCGA-BR-4257-01 5 149375760 149375760 C T TIGD6 Missense_Mutation p.R51H 0.24 tolerated(0.13) benign(0.013) TCGA-BR-4257-01 5 150029539 150029539 C T SYNPO Missense_Mutation p.R812C 0.42 deleterious(0) probably_damaging(0.987) TCGA-BR-4257-01 5 150075217 150075217 T C RBM22 Silent p.K199K 0.30 TCGA-BR-4257-01 5 150932868 150932868 C T FAT2 Silent p.P1342P 0.29 TCGA-BR-4257-01 5 161576143 161576143 C A GABRG2 Missense_Mutation p.L358I 0.27 deleterious(0) probably_damaging(0.997) TCGA-BR-4257-01 5 169477279 169477279 G A DOCK2 Missense_Mutation p.R1364H 0.23 deleterious(0) probably_damaging(1) TCGA-BR-4257-01 5 175110585 175110585 T C HRH2 Missense_Mutation p.Y117H 0.23 deleterious(0) probably_damaging(1) TCGA-BR-4257-01 5 176072487 176072487 C T EIF4E1B Missense_Mutation p.A195V 0.38 tolerated(0.11) probably_damaging(0.957) TCGA-BR-4257-01 5 176308391 176308391 C T HK3 Missense_Mutation p.V847M 0.28 deleterious(0.01) probably_damaging(1) TCGA-BR-4257-01 5 176520703 176520703 A G FGFR4 Silent p.V482V 0.35 TCGA-BR-4257-01 5 176939513 176939513 C A DDX41 Missense_Mutation p.E511D 0.24 tolerated(0.54) benign(0.366) TCGA-BR-4257-01 5 178359697 178359697 G A ZFP2 Silent p.T461T 0.27 TCGA-BR-4257-01 5 179227025 179227025 A G MGAT4B Missense_Mutation p.M295T 0.22 deleterious(0) benign(0.374) TCGA-BR-4257-01 5 180622608 180622608 C T TRIM7 Missense_Mutation p.R365H 0.33 deleterious(0) probably_damaging(0.997) TCGA-BR-4257-01 5 180651518 180651518 G A TRIM41 Silent p.P173P 0.29 TCGA-BR-4257-01 5 19473667 19473667 C T CDH18 Missense_Mutation p.A681T 0.14 tolerated(0.16) possibly_damaging(0.795) TCGA-BR-4257-01 5 21842333 21842333 C T CDH12 Missense_Mutation p.G251R 0.24 deleterious(0) probably_damaging(0.996) TCGA-BR-4257-01 5 32126538 32126538 A C GOLPH3 Missense_Mutation p.V226G 0.24 deleterious(0.03) possibly_damaging(0.536) TCGA-BR-4257-01 5 32599082 32599082 T C SUB1 Missense_Mutation p.Y71H 0.30 deleterious(0.02) benign(0.111) TCGA-BR-4257-01 5 34004719 34004719 C T AMACR Missense_Mutation p.R171H 0.18 deleterious(0.01) possibly_damaging(0.801) TCGA-BR-4257-01 5 34954762 34954762 G A DNAJC21 Silent p.S558S 0.22 TCGA-BR-4257-01 5 38370555 38370555 C T EGFLAM Missense_Mutation p.R235W 0.23 deleterious_low_confidence(0) possibly_damaging(0.762) TCGA-BR-4257-01 5 434067 434067 G A AHRR Silent p.A426A 0.25 TCGA-BR-4257-01 5 5209338 5209338 C T ADAMTS16 Silent p.L528L 0.43 TCGA-BR-4257-01 5 61686760 61686760 G A DIMT1 Missense_Mutation p.T281I 0.25 deleterious(0.05) benign(0.131) TCGA-BR-4257-01 5 61770244 61770245 - T IPO11 Frame_Shift_Ins p.L279Ffs*6 0.18 TCGA-BR-4257-01 5 637758 637758 C T CEP72 Missense_Mutation p.T344M 0.33 tolerated(0.14) benign(0.002) TCGA-BR-4257-01 5 64756033 64756033 G A ADAMTS6 Nonsense_Mutation p.R199* 0.27 TCGA-BR-4257-01 5 66430464 66430464 C T MAST4 Silent p.C780C 0.18 TCGA-BR-4257-01 5 70308328 70308328 C T NAIP Missense_Mutation p.D139N 0.21 deleterious(0) possibly_damaging(0.653) TCGA-BR-4257-01 5 72868396 72868396 A G UTP15 Silent p.T252T 0.35 TCGA-BR-4257-01 5 73931957 73931957 T C ENC1 Silent p.E118E 0.24 TCGA-BR-4257-01 5 75505643 75505643 C T SV2C Missense_Mutation p.L282F 0.16 deleterious(0) probably_damaging(0.984) TCGA-BR-4257-01 5 76358967 76358967 A - AGGF1 Frame_Shift_Del p.N681Tfs*29 0.21 TCGA-BR-4257-01 5 78328598 78328598 T C DMGDH Missense_Mutation p.R477G 0.25 tolerated(0.42) benign(0.017) TCGA-BR-4257-01 5 7875484 7875484 G A MTRR Missense_Mutation p.V160I 0.32 deleterious(0.03) possibly_damaging(0.9) TCGA-BR-4257-01 5 79372814 79372814 C - THBS4 Frame_Shift_Del p.P678Lfs*50 0.27 TCGA-BR-4257-01 5 9202323 9202323 C T SEMA5A Missense_Mutation p.G226R 0.27 deleterious(0) benign(0.178) TCGA-BR-4257-01 5 95099279 95099279 A G RHOBTB3 Silent p.S372S 0.25 TCGA-BR-4257-01 5 95116113 95116113 A G RHOBTB3 Silent p.T480T 0.21 TCGA-BR-4257-01 5 98236745 98236745 T - CHD1 Frame_Shift_Del p.K210Rfs*39 0.19 TCGA-BR-4257-01 6 100896434 100896434 C T SIM1 Missense_Mutation p.V222I 0.18 tolerated(1) benign(0.016) TCGA-BR-4257-01 6 107391922 107391922 T G BEND3 Missense_Mutation p.K158T 0.21 tolerated_low_confidence(0.09) possibly_damaging(0.907) TCGA-BR-4257-01 6 10874821 10874821 G A GCM2 Silent p.L310L 0.21 TCGA-BR-4257-01 6 108984784 108984784 C T FOXO3 Missense_Mutation p.R250W 0.33 deleterious(0) probably_damaging(1) TCGA-BR-4257-01 6 111320954 111320954 A G RPF2 Silent p.L119L 0.24 TCGA-BR-4257-01 6 111654524 111654524 T A REV3L Missense_Mutation p.Y2576F 0.33 tolerated(0.12) probably_damaging(0.999) TCGA-BR-4257-01 6 111912543 111912543 C T TRAF3IP2 Silent p.Q249Q 0.23 TCGA-BR-4257-01 6 117037453 117037453 G A KPNA5 Missense_Mutation p.G243D 0.16 deleterious(0.01) probably_damaging(0.996) TCGA-BR-4257-01 6 117586919 117586919 G A VGLL2 5'UTR 0.22 TCGA-BR-4257-01 6 117650526 117650526 C A ROS1 Nonsense_Mutation p.G1778* 0.14 TCGA-BR-4257-01 6 11778881 11778881 C T ADTRP Missense_Mutation p.A38T 0.22 tolerated(0.59) benign(0.185) TCGA-BR-4257-01 6 117864339 117864339 G A DCBLD1 Silent p.V470V 0.23 TCGA-BR-4257-01 6 119281303 119281303 G A FAM184A Missense_Mutation p.R1130C 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-BR-4257-01 6 12296244 12296244 C T EDN1 Silent p.L195L 0.20 TCGA-BR-4257-01 6 123318992 123318992 C A CLVS2 Missense_Mutation p.P24T 0.22 deleterious(0.01) benign(0.425) TCGA-BR-4257-01 6 128388769 128388769 C T PTPRK Silent p.P684P 0.19 TCGA-BR-4257-01 6 128561240 128561240 G A PTPRK Silent p.N211N 0.21 TCGA-BR-4257-01 6 129775324 129775324 C T LAMA2 Missense_Mutation p.R2200C 0.19 deleterious(0) probably_damaging(1) TCGA-BR-4257-01 6 131191139 131191139 C T EPB41L2 Missense_Mutation p.R724H 0.46 tolerated(0.17) benign(0.354) TCGA-BR-4257-01 6 131895319 131895319 A G ARG1 Intron 0.26 TCGA-BR-4257-01 6 132270619 132270619 A G CTGF Missense_Mutation p.Y279H 0.16 deleterious(0) probably_damaging(0.965) TCGA-BR-4257-01 6 137018441 137018441 T C MAP3K5 Silent p.A297A 0.34 TCGA-BR-4257-01 6 143093783 143093783 C T HIVEP2 Missense_Mutation p.R698Q 0.24 deleterious(0) possibly_damaging(0.678) TCGA-BR-4257-01 6 144724272 144724272 C T UTRN Silent p.D31D 0.15 TCGA-BR-4257-01 6 149342520 149342520 C T UST Silent p.L280L 0.18 TCGA-BR-4257-01 6 150210620 150210620 A G RAET1E Silent p.H162H 0.23 TCGA-BR-4257-01 6 152129084 152129084 G A ESR1 Missense_Mutation p.A13T 0.13 tolerated_low_confidence(0.21) benign(0.008) TCGA-BR-4257-01 6 152382191 152382191 G A ESR1 Missense_Mutation p.R434Q 0.10 deleterious(0.01) benign(0.114) TCGA-BR-4257-01 6 152711422 152711422 C T SYNE1 Missense_Mutation p.A2724T 0.26 benign(0.003) TCGA-BR-4257-01 6 154489165 154489165 G A IPCEF1 Nonsense_Mutation p.R332* 0.16 TCGA-BR-4257-01 6 15501269 15501269 C T JARID2 Missense_Mutation p.R693W 0.20 deleterious(0) probably_damaging(1) TCGA-BR-4257-01 6 15507634 15507634 C T JARID2 Silent p.L906L 0.16 TCGA-BR-4257-01 6 15520429 15520429 C T JARID2 Missense_Mutation p.P1230S 0.16 tolerated_low_confidence(0.4) benign(0.01) TCGA-BR-4257-01 6 15524787 15524789 CTC - DTNBP1 In_Frame_Del p.G260del 0.24 TCGA-BR-4257-01 6 155761270 155761270 T C NOX3 Missense_Mutation p.N163S 0.15 tolerated(0.24) benign(0.054) TCGA-BR-4257-01 6 158927779 158927779 C T TULP4 3'UTR 0.21 TCGA-BR-4257-01 6 159062373 159062375 TCA - DYNLT1 In_Frame_Del p.D15del 0.37 TCGA-BR-4257-01 6 161157984 161157984 G - PLG Frame_Shift_Del p.C585Vfs*27 0.22 TCGA-BR-4257-01 6 162683713 162683713 C T PARK2 Missense_Mutation p.D86N 0.22 tolerated(0.52) benign(0.102) TCGA-BR-4257-01 6 166580961 166580961 C T T Missense_Mutation p.R40H 0.27 deleterious(0) possibly_damaging(0.781) TCGA-BR-4257-01 6 167754476 167754476 C T TTLL2 Missense_Mutation p.A363V 0.23 tolerated(0.24) possibly_damaging(0.611) TCGA-BR-4257-01 6 168319469 168319469 C T MLLT4 Missense_Mutation p.R915C 0.15 deleterious(0) probably_damaging(0.999) TCGA-BR-4257-01 6 169648977 169648977 G A THBS2 Silent p.P48P 0.20 TCGA-BR-4257-01 6 17629339 17629339 A C NUP153 Missense_Mutation p.S1031A 0.21 tolerated(0.78) benign(0.001) TCGA-BR-4257-01 6 20144533 20144534 - A MBOAT1 Frame_Shift_Ins p.V113Cfs*46 0.14 TCGA-BR-4257-01 6 25279940 25279940 A - LRRC16A 5'UTR 0.24 TCGA-BR-4257-01 6 26240942 26240942 A G HIST1H4F Missense_Mutation p.T97A 0.23 deleterious(0.01) benign(0.097) TCGA-BR-4257-01 6 26384103 26384103 C G BTN2A2 Silent p.L18L 0.16 TCGA-BR-4257-01 6 26423300 26423300 A G BTN2A3P RNA 0.18 TCGA-BR-4257-01 6 26423392 26423392 G A BTN2A3P RNA 0.19 TCGA-BR-4257-01 6 26423427 26423427 G A BTN2A3P RNA 0.23 TCGA-BR-4257-01 6 26452045 26452045 T C BTN3A3 Silent p.C387C 0.21 TCGA-BR-4257-01 6 29691157 29691157 A T HLA-F 5'Flank 0.33 TCGA-BR-4257-01 6 29797196 29797196 C T HLA-G Silent p.D207D 0.21 TCGA-BR-4257-01 6 30154088 30154088 C T TRIM26 Silent p.E395E 0.27 TCGA-BR-4257-01 6 30227727 30227727 A G HCG17 Intron 0.23 TCGA-BR-4257-01 6 30574361 30574361 C T PPP1R10 Missense_Mutation p.R173Q 0.22 tolerated(0.35) benign(0.02) TCGA-BR-4257-01 6 30632714 30632714 G A DHX16 Missense_Mutation p.A394V 0.33 deleterious(0) unknown(0) TCGA-BR-4257-01 6 30672220 30672220 A G MDC1 Silent p.P1580P 0.19 TCGA-BR-4257-01 6 31765516 31765518 GAA - LSM2 3'UTR 0.26 TCGA-BR-4257-01 6 31931826 31931826 C T SKIV2L Missense_Mutation p.S595L 0.46 tolerated(0.31) benign(0.051) TCGA-BR-4257-01 6 32151282 32151283 - T RNF5 3'Flank 0.24 TCGA-BR-4257-01 6 33164323 33164323 C - RXRB Frame_Shift_Del p.G294Efs*43 0.26 TCGA-BR-4257-01 6 33411085 33411085 A G SYNGAP1 Missense_Mutation p.Q919R 0.21 tolerated(0.59) probably_damaging(0.996) TCGA-BR-4257-01 6 34008491 34008491 C T GRM4 Silent p.E401E 0.19 TCGA-BR-4257-01 6 34059806 34059806 C T GRM4 Missense_Mutation p.R197H 0.20 deleterious(0) probably_damaging(0.999) TCGA-BR-4257-01 6 34937854 34937854 C A ANKS1A Missense_Mutation p.P116T 0.19 deleterious(0) probably_damaging(1) TCGA-BR-4257-01 6 35086017 35086017 C T TCP11 3'UTR 0.17 TCGA-BR-4257-01 6 35260699 35260699 C T ZNF76 Missense_Mutation p.R403W 0.24 deleterious(0) benign(0.386) TCGA-BR-4257-01 6 35478786 35478786 C A TULP1 Missense_Mutation p.E117D 0.23 tolerated_low_confidence(0.33) benign(0.001) TCGA-BR-4257-01 6 36930862 36930862 C A PI16 Silent p.V248V 0.29 TCGA-BR-4257-01 6 37336428 37336429 - C RNF8 Frame_Shift_Ins p.N140Efs*2 0.08 TCGA-BR-4257-01 6 37430630 37430630 G A CMTR1 Missense_Mutation p.V451M 0.08 tolerated(0.1) benign(0.071) TCGA-BR-4257-01 6 38560444 38560444 G A BTBD9 Missense_Mutation p.P241L 0.26 deleterious(0) unknown(0) TCGA-BR-4257-01 6 38863896 38863896 T C DNAH8 Silent p.C2728C 0.21 TCGA-BR-4257-01 6 38905788 38905788 C T DNAH8 Nonsense_Mutation p.R3651* 0.11 TCGA-BR-4257-01 6 40399588 40399588 G A LRFN2 Missense_Mutation p.P422L 0.49 tolerated(0.23) benign(0.035) TCGA-BR-4257-01 6 42712709 42712709 A T TBCC 3'UTR 0.21 TCGA-BR-4257-01 6 42936059 42936059 G A PEX6 Missense_Mutation p.H553Y 0.49 deleterious(0.01) benign(0.279) TCGA-BR-4257-01 6 43023827 43023827 C T MRPL2 Missense_Mutation p.R171Q 0.26 tolerated(0.06) benign(0.309) TCGA-BR-4257-01 6 44120388 44120388 C T TMEM63B Missense_Mutation p.T632M 0.20 deleterious(0) probably_damaging(0.983) TCGA-BR-4257-01 6 46661387 46661387 C T TDRD6 Missense_Mutation p.P1841L 0.30 tolerated(0.45) benign(0.005) TCGA-BR-4257-01 6 46803149 46803149 C T MEP1A Silent p.S649S 0.24 TCGA-BR-4257-01 6 47471097 47471097 T C CD2AP Missense_Mutation p.V29A 0.28 deleterious(0.03) possibly_damaging(0.877) TCGA-BR-4257-01 6 47759639 47759639 T C OPN5 Missense_Mutation p.C118R 0.24 deleterious(0.01) possibly_damaging(0.83) TCGA-BR-4257-01 6 49754751 49754751 G A PGK2 Silent p.C50C 0.19 TCGA-BR-4257-01 6 51882291 51882291 A G PKHD1 Silent p.I1839I 0.22 TCGA-BR-4257-01 6 53706924 53706924 T C LRRC1 Missense_Mutation p.V59A 0.17 tolerated(0.51) benign(0.019) TCGA-BR-4257-01 6 54212213 54212213 C T TINAG Missense_Mutation p.A266V 0.17 tolerated(0.33) benign(0.016) TCGA-BR-4257-01 6 70098693 70098693 G T BAI3 Missense_Mutation p.K1493N 0.27 tolerated(0.13) probably_damaging(0.974) TCGA-BR-4257-01 6 70423622 70423622 C T LMBRD1 Missense_Mutation p.R277Q 0.09 tolerated(0.19) benign(0.067) TCGA-BR-4257-01 6 72011426 72011426 A - OGFRL1 Frame_Shift_Del p.A346Pfs*13 0.17 TCGA-BR-4257-01 6 72011784 72011784 T C OGFRL1 3'UTR 0.23 TCGA-BR-4257-01 6 72889303 72889303 G A RIMS1 Missense_Mutation p.R166Q 0.18 deleterious(0) probably_damaging(0.99) TCGA-BR-4257-01 6 73902309 73902309 A G KCNQ5 Silent p.K596K 0.12 TCGA-BR-4257-01 6 73904255 73904255 C T KCNQ5 Silent p.L658L 0.30 TCGA-BR-4257-01 6 74150030 74150030 C T MB21D1 Missense_Mutation p.R339H 0.17 deleterious(0.01) benign(0.065) TCGA-BR-4257-01 6 79608035 79608036 - A IRAK1BP1 Frame_Shift_Ins p.H259Afs*23 0.19 TCGA-BR-4257-01 6 88187198 88187198 C A SLC35A1 Silent p.T45T 0.13 TCGA-BR-4257-01 6 88853531 88853531 A - CNR1 3'UTR 0.44 TCGA-BR-4257-01 6 89322319 89322319 T A RNGTT 3'UTR 0.52 TCGA-BR-4257-01 6 90354754 90354754 A G MDN1 Silent p.L5528L 0.16 TCGA-BR-4257-01 6 90513053 90513053 A G MDN1 Missense_Mutation p.V108A 0.11 benign(0.005) TCGA-BR-4257-01 6 91226170 91226170 A - MAP3K7 3'UTR 0.42 TCGA-BR-4257-01 6 99374804 99374804 G A FBXL4 Missense_Mutation p.R21C 0.21 deleterious_low_confidence(0) possibly_damaging(0.79) TCGA-BR-4257-01 6 99739692 99739692 A T FAXC Missense_Mutation p.D276E 0.20 tolerated(0.29) benign(0.143) TCGA-BR-4257-01 7 100148122 100148124 AGA - AGFG2 In_Frame_Del p.K142del 0.24 TCGA-BR-4257-01 7 100175014 100175014 T C LRCH4 Splice_Site p.X393_splice 0.27 TCGA-BR-4257-01 7 100551663 100551663 G A MUC3A Silent p.T138T 0.18 TCGA-BR-4257-01 7 104742433 104742433 A G KMT2E Missense_Mutation p.Q663R 0.20 deleterious_low_confidence(0.02) benign(0.069) TCGA-BR-4257-01 7 104748331 104748331 G A KMT2E Missense_Mutation p.D1143N 0.15 deleterious_low_confidence(0) possibly_damaging(0.555) TCGA-BR-4257-01 7 11022051 11022051 A C PHF14 Missense_Mutation p.E55D 0.14 tolerated_low_confidence(0.34) unknown(0) TCGA-BR-4257-01 7 112407372 112407372 G A TMEM168 Silent p.C658C 0.15 TCGA-BR-4257-01 7 114299690 114299690 A G FOXP2 Missense_Mutation p.T562A 0.19 tolerated(0.09) possibly_damaging(0.841) TCGA-BR-4257-01 7 120629564 120629564 T C CPED1 5'UTR 0.24 TCGA-BR-4257-01 7 122341990 122341990 C T RNF148 Missense_Mutation p.R272H 0.17 deleterious(0) probably_damaging(0.91) TCGA-BR-4257-01 7 123334810 123334811 - T WASL Frame_Shift_Ins p.T262Nfs*5 0.18 TCGA-BR-4257-01 7 127669218 127669218 C T LRRC4 Silent p.T492T 0.22 TCGA-BR-4257-01 7 128038480 128038480 G A IMPDH1 Silent p.D354D 0.28 TCGA-BR-4257-01 7 128478816 128478816 C - FLNC Frame_Shift_Del p.I459Sfs*33 0.29 TCGA-BR-4257-01 7 129933076 129933076 A - CPA4 Frame_Shift_Del p.K20Nfs*8 0.20 TCGA-BR-4257-01 7 129950820 129950820 G T CPA4 Missense_Mutation p.E329D 0.16 tolerated(0.76) benign(0) TCGA-BR-4257-01 7 138832998 138832998 T C TTC26 Silent p.L198L 0.18 TCGA-BR-4257-01 7 139719863 139719863 A - TBXAS1 Frame_Shift_Del p.N571Mfs*29 0.14 TCGA-BR-4257-01 7 140051864 140051864 A T SLC37A3 Missense_Mutation p.I234N 0.46 deleterious(0) possibly_damaging(0.701) TCGA-BR-4257-01 7 142562308 142562309 - G EPHB6 Frame_Shift_Ins p.A253Gfs*71 0.23 TCGA-BR-4257-01 7 143573696 143573696 C T FAM115A Silent p.A2A 0.28 TCGA-BR-4257-01 7 143827119 143827119 G T OR2A14 Missense_Mutation p.R305M 0.24 tolerated(0.23) benign(0.034) TCGA-BR-4257-01 7 1478512 1478512 C T MICALL2 Missense_Mutation p.E696K 0.25 tolerated(0.35) benign(0.008) TCGA-BR-4257-01 7 148496368 148496368 C T CUL1 Missense_Mutation p.A713V 0.22 deleterious(0.02) possibly_damaging(0.906) TCGA-BR-4257-01 7 148801590 148801590 C T ZNF425 Missense_Mutation p.R458H 0.29 deleterious(0.05) benign(0.025) TCGA-BR-4257-01 7 149129573 149129573 C T ZNF777 Missense_Mutation p.R597H 0.29 tolerated(0.1) probably_damaging(0.967) TCGA-BR-4257-01 7 149505383 149505383 C T SSPO RNA 0.15 TCGA-BR-4257-01 7 150656686 150656686 C G KCNH2 Missense_Mutation p.G149A 0.24 tolerated(0.77) benign(0.001) TCGA-BR-4257-01 7 150698398 150698398 G - NOS3 Frame_Shift_Del p.G440Afs*64 0.21 TCGA-BR-4257-01 7 150747697 150747697 T C ASIC3 Splice_Site p.X271_splice 0.17 TCGA-BR-4257-01 7 151878749 151878749 G A KMT2C Nonsense_Mutation p.R2066* 0.22 TCGA-BR-4257-01 7 154739611 154739611 A G PAXIP1 Splice_Site p.X974_splice 0.18 TCGA-BR-4257-01 7 155599049 155599049 G A SHH Missense_Mutation p.A168V 0.12 deleterious(0) possibly_damaging(0.883) TCGA-BR-4257-01 7 18630000 18630000 C A HDAC9 Silent p.L102L 0.30 TCGA-BR-4257-01 7 18875107 18875107 C T HDAC9 Silent p.N828N 0.31 TCGA-BR-4257-01 7 21631141 21631141 A - DNAH11 Frame_Shift_Del p.K873Nfs*4 0.23 TCGA-BR-4257-01 7 22206738 22206738 C T RAPGEF5 Silent p.T258T 0.25 TCGA-BR-4257-01 7 27140675 27140675 G A HOXA2 Silent p.G267G 0.18 TCGA-BR-4257-01 7 27181672 27181672 G A HOXA5 Missense_Mutation p.R199W 0.15 deleterious(0) probably_damaging(1) TCGA-BR-4257-01 7 27872467 27872470 ATTG - JAZF1 Frame_Shift_Del p.N228Sfs*48 0.19 TCGA-BR-4257-01 7 29918676 29918676 C T WIPF3 Missense_Mutation p.A92V 0.30 deleterious(0.05) benign(0.053) TCGA-BR-4257-01 7 31692254 31692254 G T CCDC129 Missense_Mutation p.R1008S 0.15 tolerated(0.67) benign(0.048) TCGA-BR-4257-01 7 31692285 31692285 G A CCDC129 Missense_Mutation p.A1019T 0.18 tolerated(0.19) benign(0.079) TCGA-BR-4257-01 7 43477677 43477677 A G HECW1 Missense_Mutation p.I293V 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-BR-4257-01 7 43918266 43918266 C T URGCP Missense_Mutation p.V266M 0.23 deleterious(0.02) possibly_damaging(0.796) TCGA-BR-4257-01 7 44618986 44618986 T - TMED4 3'UTR 0.26 TCGA-BR-4257-01 7 45120589 45120589 G A NACAD Silent p.A1479A 0.25 TCGA-BR-4257-01 7 45753312 45753312 G A ADCY1 Silent p.R1026R 0.17 TCGA-BR-4257-01 7 5340174 5340174 G A SLC29A4 Missense_Mutation p.R444H 0.18 tolerated(0.08) possibly_damaging(0.75) TCGA-BR-4257-01 7 5396806 5396806 G A TNRC18 Silent p.P1645P 0.35 TCGA-BR-4257-01 7 5662498 5662498 C T RNF216 Missense_Mutation p.R922H 0.16 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BR-4257-01 7 57528542 57528542 A - ZNF716 Frame_Shift_Del p.K127Nfs*6 0.13 TCGA-BR-4257-01 7 6155062 6155062 G A USP42 Missense_Mutation p.G117D 0.25 deleterious(0) probably_damaging(1) TCGA-BR-4257-01 7 64168629 64168629 A G ZNF107 Silent p.S649S 0.15 TCGA-BR-4257-01 7 71252835 71252835 G A CALN1 Silent p.C237C 0.15 TCGA-BR-4257-01 7 77567104 77567104 T C PHTF2 Silent p.C438C 0.19 TCGA-BR-4257-01 7 78636481 78636481 G A MAGI2 Nonsense_Mutation p.R115* 0.20 TCGA-BR-4257-01 7 80108232 80108232 C T GNAT3 Missense_Mutation p.R129Q 0.23 tolerated(0.15) benign(0.021) TCGA-BR-4257-01 7 8125841 8125841 G A GLCCI1 Silent p.S439S 0.29 TCGA-BR-4257-01 7 82544741 82544741 C T PCLO Silent p.K4187K 0.20 TCGA-BR-4257-01 7 888201 888201 T C SUN1 Intron 0.23 TCGA-BR-4257-01 7 88963180 88963180 C A ZNF804B Missense_Mutation p.T295N 0.16 tolerated(0.42) possibly_damaging(0.642) TCGA-BR-4257-01 7 89790622 89790622 A G STEAP1 Silent p.A196A 0.25 TCGA-BR-4257-01 7 91632476 91632476 C T AKAP9 Missense_Mutation p.S1082L 0.16 benign(0.009) TCGA-BR-4257-01 7 94168365 94168365 T C CASD1 Silent p.S451S 0.17 TCGA-BR-4257-01 7 96651438 96651438 C T DLX5 Intron 0.33 TCGA-BR-4257-01 7 96651485 96651485 C T DLX5 Intron 0.14 TCGA-BR-4257-01 7 97935802 97935802 G A BAIAP2L1 Missense_Mutation p.T397M 0.19 deleterious(0) probably_damaging(1) TCGA-BR-4257-01 7 98534814 98534814 A G TRRAP Missense_Mutation p.R1383G 0.22 possibly_damaging(0.644) TCGA-BR-4257-01 7 99129417 99129418 - A ZKSCAN5 Frame_Shift_Ins p.N691Kfs*5 0.13 TCGA-BR-4257-01 8 100844800 100844800 A G VPS13B Silent p.P3203P 0.20 TCGA-BR-4257-01 8 101243518 101243518 C T SPAG1 Splice_Site p.X663_splice 0.15 TCGA-BR-4257-01 8 10159084 10159084 G T MSRA Missense_Mutation p.Q124H 0.13 tolerated(0.07) benign(0.004) TCGA-BR-4257-01 8 103289349 103289349 T - UBR5 Frame_Shift_Del p.E2121Kfs*28 0.33 TCGA-BR-4257-01 8 103297968 103297968 G A UBR5 Missense_Mutation p.R1753C 0.20 deleterious(0) probably_damaging(0.988) TCGA-BR-4257-01 8 10467122 10467123 - G RP1L1 Frame_Shift_Ins p.T1496Hfs*45 0.33 TCGA-BR-4257-01 8 10468221 10468221 C T RP1L1 Silent p.E1129E 0.27 TCGA-BR-4257-01 8 10469625 10469625 C T RP1L1 Silent p.P661P 0.12 TCGA-BR-4257-01 8 104898242 104898242 A - RIMS2 Frame_Shift_Del p.M474Wfs*5 0.24 TCGA-BR-4257-01 8 110255326 110255326 G T NUDCD1 Missense_Mutation p.P555H 0.34 tolerated(0.11) benign(0.024) TCGA-BR-4257-01 8 113326150 113326150 G A CSMD3 Missense_Mutation p.R2561W 0.13 deleterious(0) probably_damaging(0.97) TCGA-BR-4257-01 8 114448937 114448937 G A CSMD3 Silent p.L49L 0.19 TCGA-BR-4257-01 8 11615818 11615818 C T GATA4 Missense_Mutation p.A388V 0.16 tolerated(0.3) benign(0.018) TCGA-BR-4257-01 8 118819559 118819559 C T EXT1 Missense_Mutation p.A594T 0.21 tolerated(0.64) benign(0.421) TCGA-BR-4257-01 8 120596014 120596014 T C ENPP2 Missense_Mutation p.K548E 0.14 deleterious(0) probably_damaging(0.996) TCGA-BR-4257-01 8 120854138 120854138 G A DSCC1 Nonsense_Mutation p.R274* 0.33 TCGA-BR-4257-01 8 121282285 121282285 G A COL14A1 Missense_Mutation p.A1029T 0.10 deleterious(0) probably_damaging(0.996) TCGA-BR-4257-01 8 124267220 124267220 A G ZHX1 Missense_Mutation p.Y323H 0.21 tolerated(0.91) benign(0.292) TCGA-BR-4257-01 8 124383982 124383982 C T ATAD2 Missense_Mutation p.R155H 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-BR-4257-01 8 125559294 125559294 T G NDUFB9 Silent p.P116P 0.22 TCGA-BR-4257-01 8 126062902 126062902 A G KIAA0196 Silent p.D701D 0.09 TCGA-BR-4257-01 8 128753073 128753073 A - MYC Frame_Shift_Del p.A414Pfs*29 0.18 TCGA-BR-4257-01 8 130863080 130863080 C T FAM49B Splice_Site p.X238_splice 0.27 TCGA-BR-4257-01 8 133141659 133141659 C - KCNQ3 Frame_Shift_Del p.S824Rfs*4 0.37 TCGA-BR-4257-01 8 133848813 133848813 T A PHF20L1 Missense_Mutation p.D646E 0.12 tolerated(0.21) probably_damaging(0.993) TCGA-BR-4257-01 8 134488056 134488056 G A ST3GAL1 Missense_Mutation p.S71L 0.17 benign(0.239) TCGA-BR-4257-01 8 135614560 135614560 C T ZFAT Missense_Mutation p.V468I 0.20 deleterious(0.02) probably_damaging(0.993) TCGA-BR-4257-01 8 140715158 140715158 G A KCNK9 Silent p.F26F 0.44 TCGA-BR-4257-01 8 142441050 142441050 G A PTP4A3 Missense_Mutation p.S143N 0.23 tolerated(0.09) probably_damaging(0.979) TCGA-BR-4257-01 8 144547949 144547949 C T ZC3H3 Missense_Mutation p.V749M 0.09 deleterious(0) probably_damaging(0.999) TCGA-BR-4257-01 8 144776046 144776046 G A ZNF707 Silent p.T154T 0.36 TCGA-BR-4257-01 8 145580725 145580725 A G FBXL6 Silent p.G232G 0.20 TCGA-BR-4257-01 8 145583729 145583729 G A SLC52A2 Missense_Mutation p.A193T 0.20 tolerated(0.25) possibly_damaging(0.866) TCGA-BR-4257-01 8 145638280 145638280 G A SLC39A4 Silent p.L560L 0.38 TCGA-BR-4257-01 8 145689776 145689776 C T CYHR1 Intron 0.18 TCGA-BR-4257-01 8 145741187 145741187 C T RECQL4 Missense_Mutation p.E407K 0.36 deleterious(0) benign(0.103) TCGA-BR-4257-01 8 145749481 145749481 G A LRRC14 3'UTR 0.17 TCGA-BR-4257-01 8 17401110 17401110 G A SLC7A2 Missense_Mutation p.E128K 0.41 deleterious(0) probably_damaging(1) TCGA-BR-4257-01 8 19263582 19263582 T C CSGALNACT1 Splice_Site p.X437_splice 0.42 TCGA-BR-4257-01 8 196042 196042 G T ZNF596 Missense_Mutation p.A399S 0.17 tolerated(0.09) probably_damaging(0.998) TCGA-BR-4257-01 8 22471699 22471699 T G CCAR2 Missense_Mutation p.F267V 0.29 deleterious(0) benign(0.323) TCGA-BR-4257-01 8 22473240 22473240 G A CCAR2 Missense_Mutation p.A475T 0.16 tolerated(0.35) benign(0) TCGA-BR-4257-01 8 22548748 22548748 C A EGR3 Missense_Mutation p.Q134H 0.33 tolerated(0.23) possibly_damaging(0.873) TCGA-BR-4257-01 8 22868168 22868168 C T RHOBTB2 Missense_Mutation p.R602C 0.30 tolerated(0.06) probably_damaging(0.977) TCGA-BR-4257-01 8 23191084 23191084 T C LOXL2 Missense_Mutation p.T266A 0.09 tolerated(0.35) benign(0.089) TCGA-BR-4257-01 8 24813138 24813138 C T CTD-2168K21.2 5'Flank 0.19 TCGA-BR-4257-01 8 26721708 26721708 C A ADRA1A Missense_Mutation p.R260M 0.19 deleterious(0) probably_damaging(0.996) TCGA-BR-4257-01 8 27101235 27101235 G T STMN4 Silent p.T2T 0.13 TCGA-BR-4257-01 8 27296915 27296915 G A PTK2B Missense_Mutation p.A612T 0.34 deleterious(0) possibly_damaging(0.846) TCGA-BR-4257-01 8 27922180 27922180 G A NUGGC Silent p.A260A 0.14 TCGA-BR-4257-01 8 27925085 27925085 C T NUGGC Silent p.A219A 0.25 TCGA-BR-4257-01 8 28573543 28573543 C T EXTL3 5'UTR 0.29 TCGA-BR-4257-01 8 29025013 29025013 C T KIF13B Silent p.R345R 0.20 TCGA-BR-4257-01 8 30209758 30209758 G T TUBBP1 RNA 0.12 TCGA-BR-4257-01 8 32472059 32472059 C T NRG1 Missense_Mutation p.T143I 0.18 deleterious(0.01) benign(0.026) TCGA-BR-4257-01 8 37632909 37632909 C T PROSC Silent p.N169N 0.21 TCGA-BR-4257-01 8 38828804 38828804 C T PLEKHA2 3'UTR 0.21 TCGA-BR-4257-01 8 38912036 38912036 T C ADAM9 Missense_Mutation p.C447R 0.39 deleterious(0) probably_damaging(1) TCGA-BR-4257-01 8 39872860 39872860 C T IDO2 Silent p.I334I 0.19 TCGA-BR-4257-01 8 41798536 41798536 G T KAT6A Missense_Mutation p.P955T 0.17 benign(0.013) TCGA-BR-4257-01 8 42587571 42587571 A - CHRNB3 Frame_Shift_Del p.K376Rfs*13 0.20 TCGA-BR-4257-01 8 42694398 42694399 CT - THAP1 Frame_Shift_Del p.E66Vfs*19 0.15 TCGA-BR-4257-01 8 43173622 43173622 T C POTEA RNA 0.18 TCGA-BR-4257-01 8 48809839 48809839 G A PRKDC Silent p.S1160S 0.19 TCGA-BR-4257-01 8 48888298 48888298 C T MCM4 Missense_Mutation p.R797W 0.26 deleterious(0) benign(0.1) TCGA-BR-4257-01 8 52232340 52232340 A G PXDNL 3'UTR 0.33 TCGA-BR-4257-01 8 53055565 53055565 T A ST18 Missense_Mutation p.K698M 0.65 deleterious(0) probably_damaging(0.997) TCGA-BR-4257-01 8 57130132 57130132 C T CHCHD7 3'UTR 0.44 TCGA-BR-4257-01 8 59059757 59059757 A G FAM110B Missense_Mutation p.D323G 0.19 tolerated(0.32) benign(0.029) TCGA-BR-4257-01 8 66620234 66620237 AGAG - MTFR1 Frame_Shift_Del p.R309Cfs*8 0.12 TCGA-BR-4257-01 8 68189648 68189648 T C ARFGEF1 Missense_Mutation p.I358V 0.11 tolerated(0.7) benign(0.001) TCGA-BR-4257-01 8 70488249 70488249 G - SULF1 Frame_Shift_Del p.A75Pfs*8 0.31 TCGA-BR-4257-01 8 70744031 70744031 A G SLCO5A1 Missense_Mutation p.V293A 0.36 deleterious(0) probably_damaging(0.98) TCGA-BR-4257-01 8 77617605 77617605 T C ZFHX4 Missense_Mutation p.S428P 0.13 benign(0.018) TCGA-BR-4257-01 8 8185550 8185550 G A SGK223 Silent p.P914P 0.20 TCGA-BR-4257-01 8 81897170 81897170 A G PAG1 Silent p.S239S 0.18 TCGA-BR-4257-01 8 8748408 8748408 C T MFHAS1 Missense_Mutation p.A721T 0.08 tolerated(0.78) benign(0.004) TCGA-BR-4257-01 8 8869198 8869198 C T ERI1 Missense_Mutation p.P145L 0.26 tolerated(0.13) benign(0.011) TCGA-BR-4257-01 8 95680236 95680236 C T ESRP1 Missense_Mutation p.R331W 0.19 deleterious(0) probably_damaging(1) TCGA-BR-4257-01 8 9634228 9634228 C T TNKS Silent p.A1322A 0.28 TCGA-BR-4257-01 8 98827611 98827611 T C LAPTM4B Silent p.A180A 0.25 TCGA-BR-4257-01 8 98943434 98943434 G A MATN2 Silent p.T132T 0.23 TCGA-BR-4257-01 9 100000956 100000956 G A CCDC180 Intron 0.18 TCGA-BR-4257-01 9 101340346 101340346 G A GABBR2 Silent p.N110N 0.33 TCGA-BR-4257-01 9 108151473 108151473 C T SLC44A1 3'UTR 0.33 TCGA-BR-4257-01 9 112166777 112166777 G A PTPN3 Missense_Mutation p.A635V 0.17 tolerated(0.31) benign(0.051) TCGA-BR-4257-01 9 112963554 112963554 G - C9orf152 Frame_Shift_Del p.Q132Rfs*34 0.25 TCGA-BR-4257-01 9 113261516 113261516 G A SVEP1 Missense_Mutation p.R496C 0.23 possibly_damaging(0.582) TCGA-BR-4257-01 9 114429191 114429191 C T DNAJC25-GNG10 Missense_Mutation p.R145W 0.32 deleterious_low_confidence(0) possibly_damaging(0.632) TCGA-BR-4257-01 9 116082681 116082681 T C WDR31 Missense_Mutation p.I246V 0.25 tolerated(0.71) benign(0.001) TCGA-BR-4257-01 9 117008145 117008145 G - COL27A1 Splice_Site p.X980_splice 0.19 TCGA-BR-4257-01 9 117838694 117838694 T C TNC Silent p.Q945Q 0.28 TCGA-BR-4257-01 9 124532969 124532969 C T DAB2IP Silent p.L654L 0.23 TCGA-BR-4257-01 9 125437936 125437936 T C OR1L3 Silent p.H176H 0.25 TCGA-BR-4257-01 9 125582383 125582383 C T PDCL Missense_Mutation p.S296N 0.22 deleterious(0) probably_damaging(0.997) TCGA-BR-4257-01 9 125582805 125582805 C - PDCL Frame_Shift_Del p.Q157Nfs*15 0.20 TCGA-BR-4257-01 9 125760928 125760928 G T RABGAP1 Missense_Mutation p.Q419H 0.37 tolerated(0.14) possibly_damaging(0.694) TCGA-BR-4257-01 9 12694013 12694013 T A TYRP1 Missense_Mutation p.L6H 0.21 deleterious(0.02) benign(0.401) TCGA-BR-4257-01 9 129870708 129870708 C T ANGPTL2 Silent p.R101R 0.18 TCGA-BR-4257-01 9 130294048 130294048 C T FAM129B Missense_Mutation p.G22E 0.15 tolerated(1) benign(0.022) TCGA-BR-4257-01 9 130491862 130491863 - A TTC16 Frame_Shift_Ins p.S592Ifs*6 0.28 TCGA-BR-4257-01 9 131186544 131186544 C - CERCAM Frame_Shift_Del p.Q187Rfs*84 0.29 TCGA-BR-4257-01 9 134351121 134351121 G T PRRC2B Missense_Mutation p.G1202V 0.15 deleterious(0) probably_damaging(1) TCGA-BR-4257-01 9 135277388 135277388 T - TTF1 Frame_Shift_Del p.K274Sfs*149 0.27 TCGA-BR-4257-01 9 135537951 135537951 G A DDX31 Silent p.N174N 0.29 TCGA-BR-4257-01 9 136279942 136279942 C T REXO4 Missense_Mutation p.D139N 0.18 tolerated(0.48) benign(0.003) TCGA-BR-4257-01 9 136310835 136310835 G A ADAMTS13 Missense_Mutation p.A876T 0.39 tolerated(0.69) benign(0.005) TCGA-BR-4257-01 9 136343522 136343522 T - SLC2A6 Frame_Shift_Del p.R37Gfs*40 0.30 TCGA-BR-4257-01 9 136384042 136384042 T C TMEM8C Missense_Mutation p.Y118C 0.25 deleterious(0.01) probably_damaging(0.997) TCGA-BR-4257-01 9 139571494 139571494 G A AGPAT2 Silent p.G137G 0.30 TCGA-BR-4257-01 9 140099729 140099729 C A TMEM203 Missense_Mutation p.W46C 0.36 deleterious(0) probably_damaging(1) TCGA-BR-4257-01 9 140137117 140137119 CCT - TUBB4B In_Frame_Del p.L151del 0.38 TCGA-BR-4257-01 9 140852062 140852062 C T CACNA1B Missense_Mutation p.A419V 0.24 deleterious(0.01) benign(0.017) TCGA-BR-4257-01 9 15474206 15474206 T C PSIP1 Missense_Mutation p.K220R 0.25 tolerated(0.22) probably_damaging(0.98) TCGA-BR-4257-01 9 20923740 20923740 C T FOCAD Silent p.L978L 0.12 TCGA-BR-4257-01 9 21007045 21007046 - T PTPLAD2 Frame_Shift_Ins p.K231Efs*10 0.29 TCGA-BR-4257-01 9 21206750 21206750 A G IFNA10 Missense_Mutation p.L116P 0.22 deleterious(0) probably_damaging(0.999) TCGA-BR-4257-01 9 2718833 2718833 C T KCNV2 Missense_Mutation p.T365M 0.29 deleterious(0) probably_damaging(0.953) TCGA-BR-4257-01 9 33675379 33675379 C A PTENP1 RNA 0.33 TCGA-BR-4257-01 9 35107832 35107832 G - FAM214B Frame_Shift_Del p.P147Hfs*50 0.26 TCGA-BR-4257-01 9 35869831 35869831 C T OR13J1 Missense_Mutation p.G190S 0.33 tolerated(0.31) benign(0.065) TCGA-BR-4257-01 9 37777769 37777769 G A TRMT10B 3'UTR 0.29 TCGA-BR-4257-01 9 5050791 5050792 - A JAK2 Frame_Shift_Ins p.N193Kfs*10 0.17 TCGA-BR-4257-01 9 5066768 5066768 T - JAK2 Frame_Shift_Del p.L437* 0.23 TCGA-BR-4257-01 9 6475403 6475403 A T UHRF2 Silent p.G292G 0.18 TCGA-BR-4257-01 9 7015920 7015920 G A KDM4C Silent p.A750A 0.13 TCGA-BR-4257-01 9 71827497 71827497 T C TJP2 Missense_Mutation p.Y63H 0.09 tolerated(0.77) benign(0.24) TCGA-BR-4257-01 9 72965075 72965075 A G SMC5 Missense_Mutation p.S979G 0.17 deleterious(0.04) benign(0.064) TCGA-BR-4257-01 9 732477 732477 G A KANK1 Silent p.E1035E 0.30 TCGA-BR-4257-01 9 84607323 84607323 C T SPATA31D1 Silent p.S646S 0.25 TCGA-BR-4257-01 9 94809515 94809515 C T SPTLC1 Silent p.S340S 0.26 TCGA-BR-4257-01 9 98774880 98774880 T - ERCC6L2 Frame_Shift_Del p.F323Lfs*30 0.27 TCGA-BR-4257-01 9 990546 990546 C A DMRT3 Silent p.S320S 0.35 TCGA-BR-4257-01 X 112054510 112054510 G A AMOT Missense_Mutation p.R502W 0.27 unknown(0) TCGA-BR-4257-01 X 127185298 127185298 T C ACTRT1 Silent p.A296A 0.34 TCGA-BR-4257-01 X 132160413 132160413 T - USP26 Frame_Shift_Del p.G613Afs*26 0.29 TCGA-BR-4257-01 X 138644004 138644004 A G F9 Missense_Mutation p.K387R 0.38 tolerated(0.72) benign(0.003) TCGA-BR-4257-01 X 14027111 14027111 G A GEMIN8 Missense_Mutation p.A217V 0.41 deleterious(0) possibly_damaging(0.869) TCGA-BR-4257-01 X 149983362 149983362 G A CD99L2 Missense_Mutation p.R84C 0.06 deleterious(0.03) benign(0.165) TCGA-BR-4257-01 X 152939659 152939659 A G PNCK 5'UTR 0.30 TCGA-BR-4257-01 X 153040420 153040420 C T PLXNB3 Silent p.R1362R 0.37 TCGA-BR-4257-01 X 155003589 155003589 G A SPRY3 Missense_Mutation p.R19H 0.38 tolerated(0.06) benign(0.017) TCGA-BR-4257-01 X 15711085 15711085 G A CA5BP1 Splice_Site 0.29 TCGA-BR-4257-01 X 18622050 18622050 C T CDKL5 Nonsense_Mutation p.Q336* 0.37 TCGA-BR-4257-01 X 299553 299553 T C PPP2R3B Missense_Mutation p.Y477C 0.31 deleterious(0) possibly_damaging(0.836) TCGA-BR-4257-01 X 44941988 44941988 A - KDM6A Frame_Shift_Del p.T1081Pfs*2 0.21 TCGA-BR-4257-01 X 48558962 48558962 G A SUV39H1 Missense_Mutation p.G216R 0.50 deleterious(0) probably_damaging(0.95) TCGA-BR-4257-01 X 51238903 51238903 G A NUDT11 Missense_Mutation p.H132Y 0.24 tolerated(0.15) benign(0.126) TCGA-BR-4257-01 X 5821797 5821797 T C NLGN4X Missense_Mutation p.M308V 0.33 tolerated(0.78) benign(0.001) TCGA-BR-4257-01 X 70348474 70348474 G A MED12 Silent p.S1127S 0.47 TCGA-BR-4257-01 X 70353001 70353001 A G MED12 Missense_Mutation p.Y1519C 0.45 benign(0.006) TCGA-BR-4257-01 X 73047637 73047637 C T XIST RNA 0.25 TCGA-BR-4257-01 X 9716622 9716622 G T GPR143 Silent p.S180S 0.33 TCGA-BR-4267-01 10 51768695 51768695 G T AGAP6 Missense_Mutation p.E270D 0.40 tolerated(0.56) benign(0.024) TCGA-BR-4267-01 10 91143104 91143104 G C IFIT1B Missense_Mutation p.D12H 0.35 deleterious(0) possibly_damaging(0.832) TCGA-BR-4267-01 11 379952 379952 G A B4GALNT4 Missense_Mutation p.V859I 0.30 tolerated(1) unknown(0) TCGA-BR-4267-01 11 46726634 46726634 C T ZNF408 Missense_Mutation p.P462S 0.33 tolerated(0.13) benign(0.037) TCGA-BR-4267-01 11 47282926 47282926 G T NR1H3 Missense_Mutation p.G212C 0.46 deleterious(0.04) benign(0.396) TCGA-BR-4267-01 11 55761793 55761793 G T OR5F1 Missense_Mutation p.F103L 0.32 tolerated(0.21) benign(0.02) TCGA-BR-4267-01 11 5730579 5730579 A T TRIM22 Nonsense_Mutation p.R400* 0.38 TCGA-BR-4267-01 11 61300595 61300595 A G SYT7 Silent p.L148L 0.32 TCGA-BR-4267-01 11 618098 618098 C T CDHR5 Silent p.S658S 0.50 TCGA-BR-4267-01 12 108045467 108045467 A C BTBD11 Missense_Mutation p.K1003T 0.44 tolerated(0.44) probably_damaging(0.957) TCGA-BR-4267-01 12 117657958 117657958 G C NOS1 Silent p.L1398L 0.25 TCGA-BR-4267-01 12 121013630 121013630 A G RNF10 Missense_Mutation p.S746G 0.50 deleterious(0.01) probably_damaging(0.926) TCGA-BR-4267-01 12 123463763 123463763 G A OGFOD2 Missense_Mutation p.R248Q 0.60 deleterious(0) probably_damaging(1) TCGA-BR-4267-01 12 128899732 128899732 G T TMEM132C Missense_Mutation p.V181L 0.53 deleterious(0.02) benign(0.073) TCGA-BR-4267-01 12 25398281 25398281 C T KRAS Missense_Mutation p.G13D 0.74 deleterious(0.04) possibly_damaging(0.506) TCGA-BR-4267-01 12 46240719 46240738 TGGTAAGTGGTTTATTTCTA - ARID2 Splice_Site p.X527_splice 0.50 TCGA-BR-4267-01 12 49424548 49424548 G C KMT2D Missense_Mutation p.L4559V 0.45 unknown(0) TCGA-BR-4267-01 12 55356379 55356379 T A TESPA1 Nonsense_Mutation p.K435* 0.29 TCGA-BR-4267-01 13 95118904 95118904 G A DCT Missense_Mutation p.R202C 0.29 deleterious(0) probably_damaging(0.982) TCGA-BR-4267-01 13 96743492 96743492 C T HS6ST3 Missense_Mutation p.R126C 0.27 deleterious(0) possibly_damaging(0.871) TCGA-BR-4267-01 14 103566569 103566569 C G EXOC3L4 Missense_Mutation p.Q5E 0.33 deleterious(0.03) benign(0.034) TCGA-BR-4267-01 14 51448802 51448802 G C TRIM9 Missense_Mutation p.D541E 0.40 deleterious(0.01) probably_damaging(0.971) TCGA-BR-4267-01 14 56233336 56233336 G T RP11-813I20.2 Intron 0.40 TCGA-BR-4267-01 15 33878223 33878223 T A RYR3 Missense_Mutation p.I565N 0.11 probably_damaging(0.975) TCGA-BR-4267-01 15 78454614 78454614 C T IDH3A Silent p.T172T 0.55 TCGA-BR-4267-01 16 15155664 15155664 G T RRN3 Missense_Mutation p.F631L 0.33 tolerated(0.88) benign(0.017) TCGA-BR-4267-01 16 20975848 20975848 G A DNAH3 Nonsense_Mutation p.Q3120* 0.37 TCGA-BR-4267-01 16 4164838 4164838 G A ADCY9 Silent p.G202G 0.26 TCGA-BR-4267-01 16 50354623 50354623 C A BRD7 Silent p.L522L 0.41 TCGA-BR-4267-01 16 55899941 55899941 G A CES5A Silent p.F242F 0.44 TCGA-BR-4267-01 16 70934955 70934955 G T HYDIN Nonsense_Mutation p.Y3000* 0.19 TCGA-BR-4267-01 16 71512174 71512174 T A ZNF19 Silent p.A77A 0.32 TCGA-BR-4267-01 16 84270603 84270603 C A KCNG4 Silent p.R163R 0.30 TCGA-BR-4267-01 17 36453027 36453027 T A MRPL45 5'UTR 0.27 TCGA-BR-4267-01 17 45362061 45362061 A C ITGB3 Missense_Mutation p.D205A 0.08 tolerated(0.27) benign(0.007) TCGA-BR-4267-01 18 19418419 19418419 T G MIB1 Silent p.L641L 0.45 TCGA-BR-4267-01 18 48591919 48591919 G C SMAD4 Missense_Mutation p.R361P 0.64 deleterious(0) probably_damaging(1) TCGA-BR-4267-01 19 1481839 1481839 C T PCSK4 Missense_Mutation p.M729I 0.44 tolerated_low_confidence(0.41) benign(0.003) TCGA-BR-4267-01 19 17738735 17738735 C T UNC13A Missense_Mutation p.M1256I 0.37 tolerated(0.16) benign(0.001) TCGA-BR-4267-01 19 38190035 38190035 C G ZNF607 Missense_Mutation p.G333R 0.30 deleterious(0.02) possibly_damaging(0.596) TCGA-BR-4267-01 19 38968395 38968395 G A RYR1 Missense_Mutation p.V1447M 0.40 probably_damaging(0.997) TCGA-BR-4267-01 19 41003482 41003482 T A SPTBN4 Missense_Mutation p.L252Q 0.31 deleterious(0) benign(0.113) TCGA-BR-4267-01 19 4159760 4159760 C T CREB3L3 Missense_Mutation p.S186L 0.36 deleterious(0.01) benign(0.349) TCGA-BR-4267-01 19 41938220 41938220 C G ATP5SL Missense_Mutation p.E236D 0.31 tolerated(0.07) benign(0.341) TCGA-BR-4267-01 19 47969322 47969322 G A SLC8A2 Silent p.N113N 0.11 TCGA-BR-4267-01 19 50017644 50017644 G A FCGRT Missense_Mutation p.D168N 0.33 tolerated(0.23) benign(0.049) TCGA-BR-4267-01 19 50138991 50138991 C G RRAS Missense_Mutation p.R191P 0.25 deleterious(0) probably_damaging(0.996) TCGA-BR-4267-01 19 51228703 51228703 C T CLEC11A Silent p.Y317Y 0.56 TCGA-BR-4267-01 1 11204807 11204807 C G MTOR Missense_Mutation p.M1590I 0.07 tolerated(0.33) probably_damaging(0.966) TCGA-BR-4267-01 1 150234696 150234696 A C CA14 Silent p.A132A 0.38 TCGA-BR-4267-01 1 155235680 155235680 C G CLK2 Missense_Mutation p.D301H 0.22 deleterious(0) possibly_damaging(0.856) TCGA-BR-4267-01 1 158064804 158064804 C T KIRREL Missense_Mutation p.A723V 0.36 tolerated(0.28) benign(0.022) TCGA-BR-4267-01 1 158261887 158261887 A G CD1C Silent p.V114V 0.26 TCGA-BR-4267-01 1 159176045 159176045 G T DARC Silent p.L274L 0.27 TCGA-BR-4267-01 1 197886920 197886920 A T LHX9 5'UTR 0.18 TCGA-BR-4267-01 1 201965357 201965357 G A RNPEP Missense_Mutation p.G274R 0.24 deleterious(0) probably_damaging(0.998) TCGA-BR-4267-01 1 230498095 230498095 C T PGBD5 Intron 0.60 TCGA-BR-4267-01 1 25153587 25153587 C G CLIC4 Nonsense_Mutation p.S132* 0.67 TCGA-BR-4267-01 1 35452793 35452793 T C ZMYM6 Missense_Mutation p.K1297R 0.56 tolerated_low_confidence(1) benign(0.001) TCGA-BR-4267-01 1 39341225 39341225 G C GJA9 Missense_Mutation p.H182Q 0.57 tolerated(0.66) possibly_damaging(0.8) TCGA-BR-4267-01 1 67724851 67724851 A C IL23R 3'UTR 0.37 TCGA-BR-4267-01 1 74664041 74664041 A C FPGT-TNNI3K Silent p.R40R 0.27 TCGA-BR-4267-01 1 86123656 86123656 T G ZNHIT6 Splice_Site p.X416_splice 0.50 TCGA-BR-4267-01 1 89357219 89357219 C G GTF2B 5'UTR 0.42 TCGA-BR-4267-01 20 34797562 34797562 C A EPB41L1 Missense_Mutation p.S607R 0.26 deleterious(0) probably_damaging(0.998) TCGA-BR-4267-01 20 55048432 55048432 G C RTFDC1 Missense_Mutation p.V49L 0.37 deleterious(0.03) probably_damaging(0.999) TCGA-BR-4267-01 20 60503257 60503257 C T CDH4 Missense_Mutation p.P594L 0.35 tolerated(0.09) probably_damaging(0.923) TCGA-BR-4267-01 21 42710319 42710319 A C FAM3B Silent p.R60R 0.36 TCGA-BR-4267-01 22 21385414 21385414 C T SLC7A4 Missense_Mutation p.A230T 0.57 tolerated(0.07) probably_damaging(0.954) TCGA-BR-4267-01 2 152581987 152581987 C G NEB Missense_Mutation p.V128L 0.27 benign(0.356) TCGA-BR-4267-01 2 207175935 207175935 C T ZDBF2 Missense_Mutation p.S2228L 0.30 tolerated(0.66) benign(0.32) TCGA-BR-4267-01 2 211507237 211507237 G T CPS1 Missense_Mutation p.V1003F 0.32 deleterious(0) probably_damaging(0.999) TCGA-BR-4267-01 2 42671708 42671708 G C KCNG3 Missense_Mutation p.A226G 0.37 tolerated(0.05) possibly_damaging(0.906) TCGA-BR-4267-01 3 110612008 110612008 C G RP11-553A10.1 Missense_Mutation p.D68H 0.31 tolerated(0.25) benign(0.077) TCGA-BR-4267-01 3 191861681 191861681 G T FGF12 3'UTR 0.31 TCGA-BR-4267-01 3 37368748 37368748 C G GOLGA4 Missense_Mutation p.Q1813E 0.33 benign(0.287) TCGA-BR-4267-01 3 51458366 51458366 G A VPRBP Silent p.I257I 0.41 TCGA-BR-4267-01 4 36189098 36189098 A C ARAP2 Silent p.T551T 0.09 TCGA-BR-4267-01 5 10411480 10411480 A T MARCH6 Missense_Mutation p.E576V 0.21 tolerated(0.07) benign(0.138) TCGA-BR-4267-01 5 112174631 112174631 C T APC Nonsense_Mutation p.R1114* 0.45 TCGA-BR-4267-01 5 1243688 1243688 C G SLC6A18 Missense_Mutation p.L384V 0.35 deleterious(0) probably_damaging(0.99) TCGA-BR-4267-01 5 140558485 140558485 C G PCDHB8 Missense_Mutation p.S290R 0.35 tolerated_low_confidence(0.88) benign(0) TCGA-BR-4267-01 5 175110463 175110463 C A HRH2 Missense_Mutation p.A76D 0.24 deleterious(0) probably_damaging(0.999) TCGA-BR-4267-01 5 37342678 37342678 A T NUP155 Missense_Mutation p.C356S 0.37 deleterious(0.01) possibly_damaging(0.898) TCGA-BR-4267-01 5 58021913 58021913 A T RAB3C Missense_Mutation p.T113S 0.31 tolerated(0.08) possibly_damaging(0.494) TCGA-BR-4267-01 5 79034978 79034978 A C CMYA5 Missense_Mutation p.N3464H 0.34 benign(0.122) TCGA-BR-4267-01 5 82876239 82876239 G C VCAN Missense_Mutation p.E3393Q 0.41 deleterious(0.01) possibly_damaging(0.809) TCGA-BR-4267-01 5 95278749 95278749 A T ELL2 Nonsense_Mutation p.L51* 0.38 TCGA-BR-4267-01 6 131914216 131914216 C T MED23 Missense_Mutation p.V1110M 0.61 deleterious(0) possibly_damaging(0.859) TCGA-BR-4267-01 6 20846367 20846367 C G CDKAL1 Missense_Mutation p.P234A 0.43 tolerated(0.05) possibly_damaging(0.794) TCGA-BR-4267-01 6 45869967 45869967 G C CLIC5 3'UTR 0.42 TCGA-BR-4267-01 6 4935819 4935819 G C CDYL Silent p.V254V 0.31 TCGA-BR-4267-01 6 52701078 52701078 G C GSTA5 Silent p.A76A 0.19 TCGA-BR-4267-01 7 100192033 100192033 T C FBXO24 Missense_Mutation p.V312A 0.34 deleterious_low_confidence(0.04) benign(0.153) TCGA-BR-4267-01 7 100686417 100686417 C T MUC17 Missense_Mutation p.T3907I 0.33 benign(0.022) TCGA-BR-4267-01 7 124386683 124386683 T G GPR37 Missense_Mutation p.S580R 0.26 deleterious(0.02) benign(0.247) TCGA-BR-4267-01 8 132052171 132052171 T G ADCY8 Missense_Mutation p.S137R 0.19 tolerated(0.09) probably_damaging(0.944) TCGA-BR-4267-01 8 30699691 30699691 A T TEX15 Silent p.P2281P 0.33 TCGA-BR-4267-01 8 36641903 36641903 C T KCNU1 5'UTR 0.38 TCGA-BR-4267-01 8 99961741 99961741 G A OSR2 Silent p.L187L 0.28 TCGA-BR-4267-01 9 116151266 116151266 G T ALAD Missense_Mutation p.R308S 0.13 deleterious(0.03) probably_damaging(0.996) TCGA-BR-4267-01 9 117568086 117568086 G C TNFSF15 Missense_Mutation p.F69L 0.55 tolerated(0.82) benign(0.003) TCGA-BR-4267-01 9 82335151 82335163 CATGCTGCAGCGA - TLE4 Frame_Shift_Del p.C595Afs*14 0.32 TCGA-BR-4267-01 X 12906522 12906522 A C TLR7 Missense_Mutation p.E965D 0.78 tolerated(0.55) possibly_damaging(0.515) TCGA-BR-4267-01 X 129208703 129208703 C G ELF4 Missense_Mutation p.A34P 0.70 deleterious(0) probably_damaging(1) TCGA-BR-4267-01 X 151123349 151123349 A G GABRE Missense_Mutation p.W449R 0.92 tolerated(0.35) benign(0.003) TCGA-BR-4267-01 X 48837686 48837686 C T GRIPAP1 Missense_Mutation p.R624Q 0.72 benign(0.091) TCGA-BR-4267-01 X 48934155 48934155 A G WDR45 Missense_Mutation p.Y125H 0.10 tolerated(0.65) benign(0.004) TCGA-BR-4267-01 X 49957932 49957932 C T AKAP4 Missense_Mutation p.D478N 0.72 deleterious(0.03) probably_damaging(0.957) TCGA-BR-4279-01 10 90774152 90774152 T A FAS Missense_Mutation p.I318N 0.18 tolerated(0.06) benign(0.03) TCGA-BR-4279-01 11 71948209 71948210 CC A INPPL1 Frame_Shift_Del p.A974Dfs*157 0.40 TCGA-BR-4279-01 12 101603454 101603454 G A SLC5A8 Missense_Mutation p.A58V 0.17 deleterious(0) probably_damaging(0.991) TCGA-BR-4279-01 12 119954427 119954427 G T CCDC60 Splice_Site p.X295_splice 0.19 TCGA-BR-4279-01 12 126137113 126137113 C T TMEM132B Nonsense_Mutation p.R676* 0.15 TCGA-BR-4279-01 12 40740652 40740652 T G LRRK2 Silent p.T2069T 0.12 TCGA-BR-4279-01 12 5154556 5154556 C T KCNA5 Missense_Mutation p.R415C 0.14 deleterious(0) probably_damaging(0.999) TCGA-BR-4279-01 12 62954432 62954433 GT - MON2 Frame_Shift_Del p.V1191* 0.25 TCGA-BR-4279-01 12 97345236 97345236 A T NEDD1 Missense_Mutation p.N620I 0.15 deleterious(0) probably_damaging(0.994) TCGA-BR-4279-01 13 111532325 111532325 C G ANKRD10 Missense_Mutation p.G308R 0.14 deleterious(0) probably_damaging(1) TCGA-BR-4279-01 14 20586246 20586246 G A OR4K17 Silent p.Q227Q 0.19 TCGA-BR-4279-01 14 36302313 36302313 T C BRMS1L Splice_Site p.X121_splice 0.14 TCGA-BR-4279-01 15 25477429 25477429 G A SNORD115-33 3'Flank 0.13 TCGA-BR-4279-01 15 28096604 28096604 G C OCA2 Missense_Mutation p.N754K 0.23 tolerated(0.05) benign(0.142) TCGA-BR-4279-01 15 45388106 45388106 G A DUOX2 Missense_Mutation p.R1334W 0.11 deleterious(0) probably_damaging(1) TCGA-BR-4279-01 15 84442350 84442350 C A ADAMTSL3 Silent p.R89R 0.14 TCGA-BR-4279-01 16 61687977 61687977 C T CDH8 Silent p.R645R 0.14 TCGA-BR-4279-01 16 68842728 68842728 A G CDH1 Missense_Mutation p.R222G 0.20 deleterious(0) probably_damaging(0.999) TCGA-BR-4279-01 16 68856129 68856129 G T CDH1 Splice_Site p.X646_splice 0.20 TCGA-BR-4279-01 16 77393318 77393318 A C ADAMTS18 Missense_Mutation p.F407V 0.23 deleterious(0) probably_damaging(0.991) TCGA-BR-4279-01 17 43923421 43923421 G T SPPL2C Silent p.L383L 0.19 TCGA-BR-4279-01 17 54981760 54981760 C T TRIM25 Silent p.R261R 0.16 TCGA-BR-4279-01 17 61611421 61611421 G A KCNH6 Missense_Mutation p.D284N 0.17 tolerated(0.13) benign(0.044) TCGA-BR-4279-01 18 48591918 48591918 C T SMAD4 Missense_Mutation p.R361C 0.20 deleterious(0) probably_damaging(1) TCGA-BR-4279-01 19 16688410 16688410 C T MED26 Silent p.L77L 0.17 TCGA-BR-4279-01 19 50864332 50864332 G A NAPSA Silent p.F178F 0.18 TCGA-BR-4279-01 19 54848675 54848675 G A LILRA4 Silent p.I316I 0.32 TCGA-BR-4279-01 19 9089753 9089753 A G MUC16 Missense_Mutation p.S688P 0.16 unknown(0) TCGA-BR-4279-01 1 13940872 13940872 G A PDPN Missense_Mutation p.V226I 0.20 tolerated(1) benign(0.008) TCGA-BR-4279-01 1 155451842 155451843 - T ASH1L Frame_Shift_Ins p.P274Afs*12 0.24 TCGA-BR-4279-01 1 216348749 216348749 T A USH2A Missense_Mutation p.E1491V 0.14 benign(0.011) TCGA-BR-4279-01 1 45250412 45250412 G A BEST4 Missense_Mutation p.P346L 0.11 tolerated(0.17) benign(0.059) TCGA-BR-4279-01 20 62196078 62196078 C T HELZ2 Missense_Mutation p.C1366Y 0.25 tolerated(1) benign(0.001) TCGA-BR-4279-01 21 40587280 40587280 G - BRWD1 Frame_Shift_Del p.S1223Lfs*3 0.13 TCGA-BR-4279-01 22 19492984 19492984 A G CDC45 Silent p.T300T 0.18 TCGA-BR-4279-01 22 50316016 50316016 G A CRELD2 Missense_Mutation p.A222T 0.18 tolerated_low_confidence(0.36) benign(0.005) TCGA-BR-4279-01 2 232263406 232263406 G A B3GNT7 Missense_Mutation p.D326N 0.24 deleterious(0) probably_damaging(1) TCGA-BR-4279-01 3 113858530 113858530 G T DRD3 Silent p.V180V 0.13 TCGA-BR-4279-01 3 122680090 122680090 C T SEMA5B Silent p.P61P 0.18 TCGA-BR-4279-01 3 141161551 141161551 C T ZBTB38 Silent p.L107L 0.14 TCGA-BR-4279-01 3 48621022 48621022 G A COL7A1 Silent p.G1456G 0.19 TCGA-BR-4279-01 4 155250824 155250824 G A DCHS2 Missense_Mutation p.R802W 0.20 deleterious(0) possibly_damaging(0.462) TCGA-BR-4279-01 4 159560437 159560437 A G RXFP1 Missense_Mutation p.N357D 0.12 tolerated(0.1) benign(0.026) TCGA-BR-4279-01 5 118861675 118861675 A G HSD17B4 Missense_Mutation p.Q571R 0.17 tolerated(0.18) benign(0.009) TCGA-BR-4279-01 5 140764604 140764604 C T PCDHGA7 Missense_Mutation p.A713V 0.18 tolerated_low_confidence(0.1) benign(0.06) TCGA-BR-4279-01 5 156535959 156535959 C A HAVCR2 Silent p.L12L 0.17 TCGA-BR-4279-01 5 70759924 70759924 G A BDP1 Silent p.S213S 0.09 TCGA-BR-4279-01 5 80631636 80631636 G A ACOT12 Missense_Mutation p.R405C 0.17 tolerated(0.18) benign(0.004) TCGA-BR-4279-01 6 152631075 152631075 G A SYNE1 Silent p.P5699P 0.16 TCGA-BR-4279-01 6 161015130 161015130 G A LPA Silent p.P1163P 0.17 TCGA-BR-4279-01 6 31779057 31779057 A G HSPA1L Silent p.G231G 0.13 TCGA-BR-4279-01 6 33372771 33372771 T G KIFC1 Missense_Mutation p.L300R 0.13 deleterious(0) probably_damaging(0.994) TCGA-BR-4279-01 6 56470093 56470093 T - DST Intron 0.29 TCGA-BR-4279-01 6 73102406 73102406 A G RIMS1 Missense_Mutation p.I1504M 0.24 tolerated(0.05) benign(0.027) TCGA-BR-4279-01 8 144400005 144400005 C T TOP1MT Silent p.T406T 0.22 TCGA-BR-4279-01 8 22458519 22458519 C T C8orf58 Silent p.V55V 0.19 TCGA-BR-4279-01 8 23305223 23305223 G A ENTPD4 Nonsense_Mutation p.R128* 0.22 TCGA-BR-4279-01 8 28999695 28999695 T C KIF13B Silent p.K771K 0.19 TCGA-BR-4279-01 8 42012282 42012282 G A AP3M2 Missense_Mutation p.R26H 0.09 deleterious(0.01) benign(0.351) TCGA-BR-4279-01 9 118950313 118950313 G C PAPPA Silent p.L432L 0.10 TCGA-BR-4279-01 9 139250955 139250955 C A GPSM1 Missense_Mutation p.P592T 0.26 tolerated(0.19) benign(0.005) TCGA-BR-4279-01 9 14720137 14720137 A G CER1 Missense_Mutation p.I252T 0.18 tolerated(0.37) benign(0) TCGA-BR-4279-01 9 33675588 33675588 C T PTENP1 RNA 0.16 TCGA-BR-4279-01 9 4712977 4712977 C G AK3 Nonstop_Mutation p.*228Sext*20 0.12 TCGA-BR-4279-01 9 66465815 66465815 C T RP11-262H14.1 RNA 0.23 TCGA-BR-4279-01 X 153129907 153129907 C T L1CAM Silent p.S1064S 0.31 TCGA-BR-4280-01 10 101473179 101473179 T G COX15 3'Flank 0.34 TCGA-BR-4280-01 10 101731839 101731839 G A DNMBP Missense_Mutation p.P15S 0.06 deleterious(0) probably_damaging(0.999) TCGA-BR-4280-01 10 102120550 102120550 C T SCD Missense_Mutation p.R314C 0.40 deleterious(0.01) benign(0.12) TCGA-BR-4280-01 10 104103805 104103805 C T GBF1 Intron 0.32 TCGA-BR-4280-01 10 104489523 104489523 T C SFXN2 Missense_Mutation p.V184A 0.40 deleterious(0.03) probably_damaging(0.999) TCGA-BR-4280-01 10 105174906 105174906 C T PDCD11 Missense_Mutation p.R506W 0.32 deleterious(0) probably_damaging(1) TCGA-BR-4280-01 10 105823514 105823514 A G COL17A1 Missense_Mutation p.S277P 0.09 unknown(0) TCGA-BR-4280-01 10 108536340 108536340 A - SORCS1 Frame_Shift_Del p.H280Tfs*43 0.25 TCGA-BR-4280-01 10 111893350 111893350 A - ADD3 Frame_Shift_Del p.K701Rfs*8 0.31 TCGA-BR-4280-01 10 114925501 114925501 G A TCF7L2 Missense_Mutation p.A527T 0.33 tolerated_low_confidence(0.07) probably_damaging(0.998) TCGA-BR-4280-01 10 118030461 118030461 C A GFRA1 Missense_Mutation p.K69N 0.22 deleterious(0.03) benign(0.062) TCGA-BR-4280-01 10 120353797 120353797 G A PRLHR Silent p.C320C 0.41 TCGA-BR-4280-01 10 12070793 12070793 G A UPF2 Missense_Mutation p.H366Y 0.32 deleterious(0.03) benign(0.439) TCGA-BR-4280-01 10 120925115 120925115 T G SFXN4 Silent p.L15L 0.42 TCGA-BR-4280-01 10 123844834 123844834 A C TACC2 Missense_Mutation p.K940T 0.43 benign(0.012) TCGA-BR-4280-01 10 127434314 127434314 A - EDRF1 Frame_Shift_Del p.S879Afs*46 0.29 TCGA-BR-4280-01 10 12803039 12803039 C T CAMK1D Missense_Mutation p.A131V 0.26 deleterious(0) probably_damaging(0.996) TCGA-BR-4280-01 10 129172450 129172450 A C DOCK1 Missense_Mutation p.N1195T 0.45 deleterious(0.03) benign(0.013) TCGA-BR-4280-01 10 129905499 129905499 G C MKI67 Silent p.G1535G 0.36 TCGA-BR-4280-01 10 129905503 129905503 G A MKI67 Missense_Mutation p.A1534V 0.35 tolerated(0.12) possibly_damaging(0.703) TCGA-BR-4280-01 10 134014458 134014458 C T DPYSL4 Missense_Mutation p.R361C 0.36 deleterious(0) probably_damaging(1) TCGA-BR-4280-01 10 134188696 134188696 T - LRRC27 Frame_Shift_Del p.F516Lfs*22 0.41 TCGA-BR-4280-01 10 21074772 21074772 G A NEBL Silent p.N983N 0.28 TCGA-BR-4280-01 10 28274045 28274045 C G ARMC4 Missense_Mutation p.D160H 0.43 deleterious(0.01) possibly_damaging(0.572) TCGA-BR-4280-01 10 50686483 50686483 G A ERCC6 Nonsense_Mutation p.R735* 0.36 TCGA-BR-4280-01 10 55581859 55581859 T C PCDH15 Missense_Mutation p.Q1878R 0.32 tolerated_low_confidence(0.34) unknown(0) TCGA-BR-4280-01 10 55721625 55721625 T C PCDH15 Missense_Mutation p.R966G 0.33 deleterious(0) possibly_damaging(0.777) TCGA-BR-4280-01 10 5789072 5789072 A G FAM208B Missense_Mutation p.T1230A 0.34 tolerated(0.46) benign(0.003) TCGA-BR-4280-01 10 68940246 68940246 A G CTNNA3 Silent p.T292T 0.20 TCGA-BR-4280-01 10 72489928 72489928 A G ADAMTS14 Missense_Mutation p.Q342R 0.41 deleterious(0.01) probably_damaging(0.943) TCGA-BR-4280-01 10 75113397 75113397 G C TTC18 Missense_Mutation p.A56G 0.38 deleterious(0) probably_damaging(0.941) TCGA-BR-4280-01 10 75877946 75877946 C T VCL 3'UTR 0.12 TCGA-BR-4280-01 10 78646919 78646919 A G KCNMA1 3'Flank 0.39 TCGA-BR-4280-01 11 100211320 100211320 T G CNTN5 Silent p.A952A 0.39 TCGA-BR-4280-01 11 105880317 105880317 C T MSANTD4 Missense_Mutation p.R328H 0.14 deleterious(0) probably_damaging(0.996) TCGA-BR-4280-01 11 107207381 107207381 A - CWF19L2 Frame_Shift_Del p.L754Wfs*5 0.29 TCGA-BR-4280-01 11 10785739 10785739 T C CTR9 Silent p.T425T 0.31 TCGA-BR-4280-01 11 108352801 108352801 A C KDELC2 Missense_Mutation p.I278S 0.42 deleterious(0) possibly_damaging(0.784) TCGA-BR-4280-01 11 111780943 111780943 A G CRYAB Intron 0.22 TCGA-BR-4280-01 11 117278692 117278692 C A CEP164 Missense_Mutation p.L1185M 0.25 deleterious(0) probably_damaging(1) TCGA-BR-4280-01 11 118244399 118244399 A G UBE4A Missense_Mutation p.Q379R 0.17 tolerated(0.25) possibly_damaging(0.471) TCGA-BR-4280-01 11 118769560 118769560 G - BCL9L Frame_Shift_Del p.P1355Lfs*6 0.32 TCGA-BR-4280-01 11 119185613 119185613 G A MCAM Silent p.D110D 0.42 TCGA-BR-4280-01 11 122720827 122720827 C T CRTAM Missense_Mutation p.T33M 0.49 tolerated(0.17) benign(0.212) TCGA-BR-4280-01 11 12315225 12315225 C T MICALCL Missense_Mutation p.P83S 0.37 deleterious(0) probably_damaging(1) TCGA-BR-4280-01 11 123887010 123887010 C T OR10G4 Silent p.H243H 0.31 TCGA-BR-4280-01 11 2438983 2438983 G A TRPM5 Missense_Mutation p.T328M 0.53 deleterious(0) probably_damaging(0.965) TCGA-BR-4280-01 11 30032940 30032940 C - KCNA4 Frame_Shift_Del p.G429Vfs*53 0.22 TCGA-BR-4280-01 11 30352754 30352754 A - ARL14EP Frame_Shift_Del p.N89Ifs*4 0.41 TCGA-BR-4280-01 11 35513670 35513670 C - PAMR1 Frame_Shift_Del p.G101Vfs*8 0.35 TCGA-BR-4280-01 11 3681478 3681478 C - ART1 Frame_Shift_Del p.F246Lfs*6 0.34 TCGA-BR-4280-01 11 45671618 45671618 C A CHST1 Missense_Mutation p.G286C 0.27 deleterious(0) probably_damaging(0.999) TCGA-BR-4280-01 11 46625165 46625165 G A HARBI1 Missense_Mutation p.P322L 0.33 tolerated(0.09) benign(0.002) TCGA-BR-4280-01 11 46910972 46910972 G T LRP4 Silent p.A735A 0.42 TCGA-BR-4280-01 11 49831959 49831959 A - RP11-707M1.1 RNA 0.32 TCGA-BR-4280-01 11 5528836 5528836 C T UBQLN3 Silent p.K651K 0.43 TCGA-BR-4280-01 11 55340531 55340531 A C OR4C16 Silent p.R310R 0.29 TCGA-BR-4280-01 11 55587286 55587286 T C OR5D18 Missense_Mutation p.Y61H 0.30 deleterious(0) probably_damaging(0.998) TCGA-BR-4280-01 11 57258808 57258808 G A SLC43A1 Missense_Mutation p.A361V 0.16 tolerated(1) benign(0.009) TCGA-BR-4280-01 11 62382265 62382265 C - ROM1 Frame_Shift_Del p.P338Hfs*60 0.35 TCGA-BR-4280-01 11 63585488 63585488 G T C11orf84 Missense_Mutation p.Q113H 0.32 tolerated(0.08) probably_damaging(0.957) TCGA-BR-4280-01 11 64606355 64606355 G A CDC42BPG Missense_Mutation p.P299L 0.33 tolerated(0.08) benign(0.01) TCGA-BR-4280-01 11 64698015 64698015 T G PPP2R5B Missense_Mutation p.L282R 0.15 deleterious(0) probably_damaging(0.995) TCGA-BR-4280-01 11 65269106 65269106 A G MALAT1 RNA 0.37 TCGA-BR-4280-01 11 65272638 65272639 - T MALAT1 RNA 0.22 TCGA-BR-4280-01 11 65349384 65349384 A G EHBP1L1 Missense_Mutation p.E414G 0.47 tolerated(0.08) possibly_damaging(0.529) TCGA-BR-4280-01 11 65386142 65386142 C T PCNXL3 Nonsense_Mutation p.R437* 0.33 TCGA-BR-4280-01 11 65486338 65486338 C A KAT5 Intron 0.36 TCGA-BR-4280-01 11 6622451 6622451 C T RRP8 Missense_Mutation p.R282H 0.46 deleterious(0.01) benign(0.443) TCGA-BR-4280-01 11 66436473 66436473 C T RBM4B Silent p.A234A 0.33 TCGA-BR-4280-01 11 67400514 67400514 G A TBX10 Missense_Mutation p.R204C 0.24 deleterious(0.01) possibly_damaging(0.764) TCGA-BR-4280-01 11 67789015 67789015 C T ALDH3B1 Silent p.T207T 0.33 TCGA-BR-4280-01 11 71276620 71276620 A G KRTAP5-10 5'UTR 0.30 TCGA-BR-4280-01 11 71733444 71733444 G T NUMA1 Missense_Mutation p.H105N 0.33 benign(0.005) TCGA-BR-4280-01 11 71932697 71932697 C T FOLR2 Missense_Mutation p.A220V 0.42 deleterious(0.02) benign(0.226) TCGA-BR-4280-01 11 72006671 72006671 C T CLPB Missense_Mutation p.G481R 0.33 deleterious(0) probably_damaging(1) TCGA-BR-4280-01 11 76905421 76905421 C T MYO7A Missense_Mutation p.A1392V 0.41 tolerated(0.13) possibly_damaging(0.836) TCGA-BR-4280-01 11 8118863 8118863 C - TUB Frame_Shift_Del p.Q316Rfs*76 0.32 TCGA-BR-4280-01 11 82951953 82951953 A C ANKRD42 Missense_Mutation p.D363A 0.24 tolerated(0.06) benign(0.05) TCGA-BR-4280-01 11 85437306 85437306 T - SYTL2 Frame_Shift_Del p.N65Ifs*9 0.28 TCGA-BR-4280-01 11 89028414 89028414 C A TYR Silent p.A490A 0.33 TCGA-BR-4280-01 11 92086551 92086551 C T FAT3 Missense_Mutation p.R425W 0.32 benign(0.339) TCGA-BR-4280-01 12 102154925 102154925 C T GNPTAB Missense_Mutation p.E1039K 0.37 deleterious(0.01) benign(0.212) TCGA-BR-4280-01 12 104123939 104123939 A G STAB2 Missense_Mutation p.I1710V 0.39 tolerated(0.24) benign(0.007) TCGA-BR-4280-01 12 108013807 108013807 G A BTBD11 Missense_Mutation p.A833T 0.36 deleterious(0.04) benign(0.194) TCGA-BR-4280-01 12 10954759 10954759 G A TAS2R7 Silent p.C137C 0.38 TCGA-BR-4280-01 12 109845646 109845646 A G MYO1H Silent p.A345A 0.35 TCGA-BR-4280-01 12 110023886 110023886 T A MVK Missense_Mutation p.I196N 0.47 deleterious(0) probably_damaging(0.999) TCGA-BR-4280-01 12 113617081 113617081 C T DDX54 Missense_Mutation p.S144N 0.32 deleterious(0) probably_damaging(1) TCGA-BR-4280-01 12 11506168 11506168 T C PRB1 Missense_Mutation p.N157S 0.24 tolerated_low_confidence(0.09) unknown(0) TCGA-BR-4280-01 12 121970842 121970842 G A KDM2B Missense_Mutation p.T267M 0.44 deleterious(0) probably_damaging(0.964) TCGA-BR-4280-01 12 122750948 122750948 G A VPS33A Missense_Mutation p.A3V 0.30 tolerated(0.06) benign(0.118) TCGA-BR-4280-01 12 123489928 123489928 C T PITPNM2 Missense_Mutation p.V271I 0.36 tolerated(0.18) benign(0.001) TCGA-BR-4280-01 12 123794283 123794283 T - SBNO1 Frame_Shift_Del p.N1139Mfs*9 0.35 TCGA-BR-4280-01 12 124371810 124371810 A G DNAH10 Missense_Mutation p.H2864R 0.47 probably_damaging(0.969) TCGA-BR-4280-01 12 12509639 12509639 G A LOH12CR2 3'UTR 0.50 TCGA-BR-4280-01 12 130647844 130647844 G A FZD10 Silent p.P119P 0.38 TCGA-BR-4280-01 12 14628902 14628902 G T ATF7IP Missense_Mutation p.D981Y 0.36 deleterious_low_confidence(0) unknown(0) TCGA-BR-4280-01 12 21033817 21033817 G C SLCO1B3 Missense_Mutation p.V454L 0.37 tolerated(0.2) benign(0.029) TCGA-BR-4280-01 12 21531328 21531329 - AG IAPP Frame_Shift_Ins p.P83Sfs*3 0.20 TCGA-BR-4280-01 12 22068696 22068696 T - ABCC9 Frame_Shift_Del p.K241Sfs*5 0.29 TCGA-BR-4280-01 12 25398281 25398281 C T KRAS Missense_Mutation p.G13D 0.25 deleterious(0.04) possibly_damaging(0.506) TCGA-BR-4280-01 12 29669328 29669328 T C TMTC1 Missense_Mutation p.Y754C 0.27 deleterious(0) probably_damaging(0.971) TCGA-BR-4280-01 12 31945165 31945165 G A H3F3C 5'UTR 0.22 TCGA-BR-4280-01 12 41419075 41419075 G A CNTN1 Missense_Mutation p.A883T 0.15 deleterious(0) probably_damaging(0.993) TCGA-BR-4280-01 12 48181527 48181527 G - HDAC7 Frame_Shift_Del p.M808Wfs*12 0.25 TCGA-BR-4280-01 12 48440804 48440804 T G SENP1 Missense_Mutation p.E578A 0.44 deleterious(0.05) benign(0.068) TCGA-BR-4280-01 12 4920572 4920572 C T KCNA6 Silent p.P455P 0.34 TCGA-BR-4280-01 12 49427944 49427944 G A KMT2D Missense_Mutation p.A3549V 0.18 probably_damaging(0.97) TCGA-BR-4280-01 12 51773084 51773084 C T GALNT6 Missense_Mutation p.R161Q 0.21 deleterious(0.01) probably_damaging(0.997) TCGA-BR-4280-01 12 52883807 52883807 G A KRT6A Missense_Mutation p.R375C 0.14 deleterious(0.01) possibly_damaging(0.478) TCGA-BR-4280-01 12 52885323 52885323 C A KRT6A Silent p.V246V 0.32 TCGA-BR-4280-01 12 53233614 53233614 C T KRT78 Missense_Mutation p.S401N 0.50 tolerated(0.88) probably_damaging(0.932) TCGA-BR-4280-01 12 53452903 53452903 C - TENC1 Frame_Shift_Del p.P505Rfs*25 0.29 TCGA-BR-4280-01 12 53454525 53454525 C A TENC1 Silent p.A955A 0.19 TCGA-BR-4280-01 12 56625312 56625312 C A SLC39A5 Missense_Mutation p.A85D 0.33 tolerated(0.66) benign(0.372) TCGA-BR-4280-01 12 56818681 56818681 A G TIMELESS Missense_Mutation p.M578T 0.35 tolerated(0.39) benign(0) TCGA-BR-4280-01 12 57579622 57579622 A G LRP1 Missense_Mutation p.S2258G 0.44 benign(0.338) TCGA-BR-4280-01 12 6309618 6309618 G C CD9 5'UTR 0.18 TCGA-BR-4280-01 12 6631158 6631158 G A NCAPD2 Missense_Mutation p.A637T 0.37 deleterious(0.02) probably_damaging(0.984) TCGA-BR-4280-01 12 70049234 70049234 T G BEST3 Missense_Mutation p.Q487P 0.06 tolerated(0.09) benign(0.003) TCGA-BR-4280-01 12 70049361 70049362 - G BEST3 Frame_Shift_Ins p.R445Qfs*58 0.33 TCGA-BR-4280-01 12 7045189 7045189 C - ATN1 Frame_Shift_Del p.P255Hfs*43 0.44 TCGA-BR-4280-01 12 7286179 7286179 C T CLSTN3 Silent p.C66C 0.48 TCGA-BR-4280-01 12 75601370 75601370 G A KCNC2 Missense_Mutation p.P132S 0.39 deleterious(0) probably_damaging(0.986) TCGA-BR-4280-01 12 85674056 85674056 A G ALX1 Missense_Mutation p.E6G 0.06 deleterious_low_confidence(0) benign(0.255) TCGA-BR-4280-01 12 8673741 8673741 C T CLEC4D Silent p.P174P 0.30 TCGA-BR-4280-01 12 9321561 9321565 ATCCC - PZP Frame_Shift_Del p.M669Ifs*6 0.29 TCGA-BR-4280-01 12 94769791 94769791 A G CCDC41 Silent p.A268A 0.70 TCGA-BR-4280-01 12 99121028 99121028 C A APAF1 Silent p.G1178G 0.32 TCGA-BR-4280-01 13 101278337 101278337 C T TMTC4 Missense_Mutation p.R525Q 0.26 tolerated(0.08) benign(0.248) TCGA-BR-4280-01 13 111156324 111156324 C - COL4A2 Frame_Shift_Del p.G1426Efs*33 0.24 TCGA-BR-4280-01 13 113731509 113731509 G A MCF2L Silent p.S548S 0.31 TCGA-BR-4280-01 13 114201627 114201628 - C TMCO3 Frame_Shift_Ins p.T570Hfs*114 0.24 TCGA-BR-4280-01 13 28498612 28498612 G A PDX1 Missense_Mutation p.R209H 0.47 deleterious(0.04) probably_damaging(0.964) TCGA-BR-4280-01 13 32821607 32821607 A - FRY Frame_Shift_Del p.T2327Pfs*55 0.22 TCGA-BR-4280-01 13 36006531 36006531 G C NBEA Splice_Site p.X2102_splice 0.06 TCGA-BR-4280-01 13 41533046 41533046 A G ELF1 Missense_Mutation p.M60T 0.32 deleterious(0) possibly_damaging(0.593) TCGA-BR-4280-01 13 41797467 41797467 C T MTRF1 Silent p.E383E 0.37 TCGA-BR-4280-01 13 46287863 46287863 G A SPERT Missense_Mutation p.A235T 0.32 tolerated(0.23) benign(0.019) TCGA-BR-4280-01 13 48620011 48620011 C T NUDT15 3'UTR 0.33 TCGA-BR-4280-01 13 50296149 50296149 A G KPNA3 Missense_Mutation p.V223A 0.21 tolerated(0.09) possibly_damaging(0.787) TCGA-BR-4280-01 13 51922396 51922396 C T SERPINE3 Missense_Mutation p.P250S 0.50 deleterious(0.04) probably_damaging(0.982) TCGA-BR-4280-01 13 53250454 53250454 A G SUGT1 Silent p.A271A 0.19 TCGA-BR-4280-01 13 53422549 53422549 C - PCDH8 Frame_Shift_Del p.G8Afs*48 0.27 TCGA-BR-4280-01 13 58206969 58206969 C T PCDH17 Missense_Mutation p.R97C 0.35 deleterious(0) probably_damaging(0.977) TCGA-BR-4280-01 13 58208750 58208750 G - PCDH17 Frame_Shift_Del p.V692Yfs*4 0.31 TCGA-BR-4280-01 13 78492678 78492678 C T EDNRB Missense_Mutation p.A101T 0.11 tolerated_low_confidence(0.53) possibly_damaging(0.639) TCGA-BR-4280-01 13 78493632 78493632 G A EDNRB Missense_Mutation p.A40V 0.21 tolerated_low_confidence(0.06) benign(0.016) TCGA-BR-4280-01 13 99505739 99505739 C T DOCK9 Missense_Mutation p.R1290H 0.25 tolerated(0.06) probably_damaging(0.999) TCGA-BR-4280-01 13 99966475 99966475 G A UBAC2 Splice_Site p.X171_splice 0.05 TCGA-BR-4280-01 14 105208323 105208323 C A ADSSL1 Missense_Mutation p.P354H 0.42 deleterious(0) probably_damaging(1) TCGA-BR-4280-01 14 105397187 105397187 A - PLD4 Frame_Shift_Del p.T277Pfs*51 0.08 TCGA-BR-4280-01 14 106090835 106090835 A T IGHG4 Missense_Mutation p.L321H 0.19 deleterious(0) probably_damaging(0.91) TCGA-BR-4280-01 14 106321609 106321609 T C IGHM Missense_Mutation p.N209D 0.52 deleterious(0.01) probably_damaging(0.997) TCGA-BR-4280-01 14 19377709 19377709 A C OR11H12 Missense_Mutation p.Q39P 0.42 deleterious(0) possibly_damaging(0.866) TCGA-BR-4280-01 14 19562054 19562054 T G POTEG Missense_Mutation p.L291V 0.75 deleterious(0.01) probably_damaging(1) TCGA-BR-4280-01 14 20215981 20215981 G A OR4Q3 Missense_Mutation p.R132H 0.13 tolerated(1) benign(0) TCGA-BR-4280-01 14 20248625 20248625 C A OR4M1 Silent p.T48T 0.16 TCGA-BR-4280-01 14 20529031 20529031 A T OR4L1 Silent p.T276T 0.45 TCGA-BR-4280-01 14 21162101 21162101 C T ANG Silent p.N126N 0.44 TCGA-BR-4280-01 14 21270141 21270141 C T RNASE1 Silent p.K29K 0.44 TCGA-BR-4280-01 14 21488953 21488953 G A NDRG2 Missense_Mutation p.A153V 0.47 tolerated(0.07) benign(0.158) TCGA-BR-4280-01 14 22789057 22789057 G A TRAV41 Silent p.K90K 0.17 TCGA-BR-4280-01 14 23517497 23517497 C T CDH24 Missense_Mutation p.A718T 0.33 tolerated(0.59) benign(0.003) TCGA-BR-4280-01 14 23523785 23523785 C - CDH24 Frame_Shift_Del p.L239Cfs*7 0.39 TCGA-BR-4280-01 14 23855229 23855229 G A MYH6 Missense_Mutation p.R1691C 0.43 deleterious(0) probably_damaging(0.946) TCGA-BR-4280-01 14 24572069 24572069 G A PCK2 Missense_Mutation p.A448T 0.35 deleterious(0) possibly_damaging(0.851) TCGA-BR-4280-01 14 24727798 24727798 T C TGM1 Missense_Mutation p.D414G 0.45 deleterious(0) probably_damaging(1) TCGA-BR-4280-01 14 31188570 31188570 C T SCFD1 Missense_Mutation p.R575W 0.39 deleterious(0) probably_damaging(0.998) TCGA-BR-4280-01 14 31638663 31638663 C T HECTD1 Silent p.R448R 0.36 TCGA-BR-4280-01 14 33015700 33015700 T C AKAP6 Missense_Mutation p.V614A 0.42 tolerated(0.4) benign(0.005) TCGA-BR-4280-01 14 36005056 36005057 - T INSM2 Frame_Shift_Ins p.S536* 0.41 TCGA-BR-4280-01 14 45414534 45414534 A - KLHL28 Frame_Shift_Del p.Y200Mfs*3 0.25 TCGA-BR-4280-01 14 45584168 45584168 T - PRPF39 3'UTR 0.54 TCGA-BR-4280-01 14 53513450 53513480 AATCAGTTTTAGGCCATTCATGTCCTTCAAG TCAGTTTTAGGCCATTCATGTCCTTCA DDHD1 3'UTR 0.16 TCGA-BR-4280-01 14 55900349 55900349 T C TBPL2 Missense_Mutation p.S263G 0.45 deleterious(0.01) possibly_damaging(0.797) TCGA-BR-4280-01 14 57938138 57938138 G C C14orf105 Missense_Mutation p.R276G 0.29 deleterious(0.02) possibly_damaging(0.827) TCGA-BR-4280-01 14 64065892 64065892 G A WDR89 Missense_Mutation p.R257C 0.38 tolerated(0.31) benign(0) TCGA-BR-4280-01 14 64655326 64655326 A - SYNE2 Frame_Shift_Del p.N5926Ifs*26 0.31 TCGA-BR-4280-01 14 69358881 69358881 C T ACTN1 Silent p.P325P 0.09 TCGA-BR-4280-01 14 74186016 74186016 T - ELMSAN1 Frame_Shift_Del p.K1042Nfs*51 0.27 TCGA-BR-4280-01 14 74824119 74824119 C T VRTN Silent p.C211C 0.56 TCGA-BR-4280-01 14 75022209 75022210 - G LTBP2 Frame_Shift_Ins p.W340Lfs*35 0.33 TCGA-BR-4280-01 14 75476005 75476005 A - EIF2B2 3'UTR 0.40 TCGA-BR-4280-01 14 90735804 90735804 G C PSMC1 Missense_Mutation p.Q315H 0.37 deleterious(0) probably_damaging(0.991) TCGA-BR-4280-01 14 94395475 94395475 C - FAM181A Frame_Shift_Del p.P345Hfs*35 0.35 TCGA-BR-4280-01 14 94413763 94413763 G A ASB2 Silent p.A328A 0.38 TCGA-BR-4280-01 14 99871696 99871696 A - SETD3 Frame_Shift_Del p.Y313Mfs*10 0.31 TCGA-BR-4280-01 15 23890722 23890722 G A MAGEL2 Missense_Mutation p.A120V 0.40 deleterious_low_confidence(0) possibly_damaging(0.863) TCGA-BR-4280-01 15 24923624 24923624 A C NPAP1 Missense_Mutation p.Q870H 0.46 tolerated(0.79) benign(0) TCGA-BR-4280-01 15 33358802 33358802 C T FMN1 Silent p.K428K 0.30 TCGA-BR-4280-01 15 34158800 34158800 T - AVEN 3'UTR 0.27 TCGA-BR-4280-01 15 37109995 37109995 A C CSNK1A1P1 RNA 0.31 TCGA-BR-4280-01 15 38228551 38228551 A - TMCO5A Frame_Shift_Del p.R11Efs*6 0.26 TCGA-BR-4280-01 15 40477506 40477506 C - BUB1B Frame_Shift_Del p.M300Cfs*31 0.34 TCGA-BR-4280-01 15 43545709 43545709 C T TGM5 Missense_Mutation p.A227T 0.20 deleterious(0.02) benign(0.05) TCGA-BR-4280-01 15 43748661 43748661 T - TP53BP1 Frame_Shift_Del p.E716Nfs*12 0.31 TCGA-BR-4280-01 15 59359012 59359012 T C RNF111 Silent p.P472P 0.46 TCGA-BR-4280-01 15 59373146 59373146 A G RNF111 Missense_Mutation p.T654A 0.39 tolerated(0.47) benign(0.204) TCGA-BR-4280-01 15 59376343 59376343 C - RNF111 Frame_Shift_Del p.P782Hfs*44 0.47 TCGA-BR-4280-01 15 60758863 60758863 A - NARG2 Frame_Shift_Del p.L153Cfs*27 0.26 TCGA-BR-4280-01 15 63904497 63904497 T C HERC1 Missense_Mutation p.N4785D 0.30 probably_damaging(0.998) TCGA-BR-4280-01 15 64373351 64373351 C A FAM96A Splice_Site p.X97_splice 0.35 TCGA-BR-4280-01 15 74640300 74640300 G A CYP11A1 Silent p.L122L 0.30 TCGA-BR-4280-01 15 75044486 75044486 G T CYP1A2 Missense_Mutation p.R355L 0.30 deleterious(0) possibly_damaging(0.8) TCGA-BR-4280-01 15 78219129 78219129 C T RP11-114H24.7 3'Flank 0.24 TCGA-BR-4280-01 15 78882366 78882366 T - CHRNA5 Frame_Shift_Del p.F213Lfs*9 0.16 TCGA-BR-4280-01 15 83333197 83333197 C A AP3B2 Missense_Mutation p.S709I 0.60 deleterious(0.02) benign(0.403) TCGA-BR-4280-01 15 91295092 91295092 A G BLM Missense_Mutation p.D292G 0.09 deleterious(0.04) benign(0.169) TCGA-BR-4280-01 16 1556268 1556268 C T TELO2 Silent p.S688S 0.39 TCGA-BR-4280-01 16 1584270 1584270 G A TMEM204 5'UTR 0.23 TCGA-BR-4280-01 16 19127146 19127146 G A ITPRIPL2 Missense_Mutation p.V455I 0.39 tolerated(0.21) benign(0.009) TCGA-BR-4280-01 16 23695383 23695383 C T PLK1 Missense_Mutation p.R337W 0.26 deleterious(0) probably_damaging(0.998) TCGA-BR-4280-01 16 29997132 29997132 C T TAOK2 Missense_Mutation p.R648C 0.50 deleterious(0) probably_damaging(0.994) TCGA-BR-4280-01 16 30536832 30536832 A G ZNF768 Missense_Mutation p.L210P 0.43 deleterious_low_confidence(0) benign(0.319) TCGA-BR-4280-01 16 30768297 30768297 A G PHKG2 Missense_Mutation p.Q367R 0.43 tolerated(0.46) benign(0.01) TCGA-BR-4280-01 16 31374335 31374335 C - ITGAX Frame_Shift_Del p.H482Ifs*44 0.36 TCGA-BR-4280-01 16 3142748 3142748 C T ZSCAN10 Missense_Mutation p.R9Q 0.59 tolerated(0.06) probably_damaging(0.999) TCGA-BR-4280-01 16 3170075 3170075 G T ZNF205 Missense_Mutation p.G472C 0.39 deleterious(0) probably_damaging(1) TCGA-BR-4280-01 16 3647657 3647657 G - SLX4 Frame_Shift_Del p.P469Hfs*4 0.30 TCGA-BR-4280-01 16 48239399 48239399 A G ABCC11 Missense_Mutation p.V577A 0.33 deleterious(0.02) probably_damaging(0.997) TCGA-BR-4280-01 16 50326687 50326687 T C ADCY7 Missense_Mutation p.V213A 0.10 tolerated(0.27) benign(0.118) TCGA-BR-4280-01 16 53348351 53348351 A - CHD9 Frame_Shift_Del p.R2415Gfs*8 0.32 TCGA-BR-4280-01 16 54318975 54318975 G A IRX3 Missense_Mutation p.A273V 0.31 tolerated(0.18) possibly_damaging(0.499) TCGA-BR-4280-01 16 55583231 55583231 C T LPCAT2 Silent p.C326C 0.12 TCGA-BR-4280-01 16 55584911 55584911 C T LPCAT2 Missense_Mutation p.A371V 0.37 deleterious(0.02) probably_damaging(0.978) TCGA-BR-4280-01 16 55850858 55850858 T A CES1 Missense_Mutation p.D308V 0.31 deleterious(0.01) benign(0.029) TCGA-BR-4280-01 16 57246908 57246908 A G RSPRY1 Missense_Mutation p.I181V 0.04 tolerated(0.5) benign(0.002) TCGA-BR-4280-01 16 58031628 58031628 G - ZNF319 Frame_Shift_Del p.P181Rfs*178 0.32 TCGA-BR-4280-01 16 603483 603483 G T CAPN15 Missense_Mutation p.E1076D 0.40 tolerated(0.69) benign(0.005) TCGA-BR-4280-01 16 61935209 61935209 A G CDH8 Missense_Mutation p.W141R 0.34 tolerated(1) benign(0.001) TCGA-BR-4280-01 16 633668 633668 C T PIGQ 3'UTR 0.30 TCGA-BR-4280-01 16 67942865 67942865 G A PSKH1 Silent p.T71T 0.38 TCGA-BR-4280-01 16 67986246 67986246 A G SLC12A4 Missense_Mutation p.V255A 0.36 deleterious(0) possibly_damaging(0.686) TCGA-BR-4280-01 16 68293549 68293549 C A PLA2G15 Missense_Mutation p.L410I 0.48 tolerated(0.13) benign(0.15) TCGA-BR-4280-01 16 69996892 69996892 G A CLEC18A Missense_Mutation p.V409M 0.20 deleterious_low_confidence(0) probably_damaging(1) TCGA-BR-4280-01 16 70395364 70395364 C A DDX19A Silent p.R113R 0.32 TCGA-BR-4280-01 16 70843797 70843797 C T HYDIN Silent p.T4924T 0.37 TCGA-BR-4280-01 16 71610203 71610203 G T TAT Missense_Mutation p.A39D 0.40 tolerated(0.61) benign(0.003) TCGA-BR-4280-01 16 71894307 71894307 G A ZNF821 Missense_Mutation p.R285W 0.47 deleterious(0) probably_damaging(0.999) TCGA-BR-4280-01 16 74729294 74729294 C T MLKL Missense_Mutation p.R121H 0.50 tolerated(0.35) benign(0.009) TCGA-BR-4280-01 16 74908279 74908279 T C WDR59 Missense_Mutation p.K918R 0.34 tolerated(0.06) benign(0.188) TCGA-BR-4280-01 16 77328919 77328919 T G ADAMTS18 Silent p.A969A 0.35 TCGA-BR-4280-01 16 85688453 85688453 A G GSE1 Missense_Mutation p.Y218C 0.39 deleterious(0) unknown(0) TCGA-BR-4280-01 16 87367837 87367837 C T FBXO31 Missense_Mutation p.R351Q 0.31 deleterious(0.05) possibly_damaging(0.508) TCGA-BR-4280-01 16 88601410 88601410 C T ZFPM1 3'UTR 0.39 TCGA-BR-4280-01 16 88781126 88781126 G A CTU2 Missense_Mutation p.G445S 0.23 tolerated(0.41) benign(0.002) TCGA-BR-4280-01 16 89295034 89295034 G A ZNF778 3'UTR 0.49 TCGA-BR-4280-01 16 89783208 89783208 G - VPS9D1 Frame_Shift_Del p.D67Tfs*6 0.33 TCGA-BR-4280-01 16 9934585 9934585 A C GRIN2A Missense_Mutation p.F524V 0.14 deleterious(0) probably_damaging(0.998) TCGA-BR-4280-01 17 1634162 1634162 A G WDR81 Missense_Mutation p.S1297G 0.30 tolerated(0.2) benign(0.001) TCGA-BR-4280-01 17 17131329 17131329 C A FLCN Missense_Mutation p.Q41H 0.30 tolerated(0.17) benign(0.155) TCGA-BR-4280-01 17 18005286 18005286 C T DRG2 Nonsense_Mutation p.R261* 0.22 TCGA-BR-4280-01 17 18653319 18653319 C T FBXW10 Intron 0.12 TCGA-BR-4280-01 17 20907606 20907606 T G USP22 Missense_Mutation p.S482R 0.36 deleterious(0.02) possibly_damaging(0.653) TCGA-BR-4280-01 17 21208376 21208376 A C MAP2K3 Missense_Mutation p.N237T 0.14 deleterious(0) probably_damaging(0.967) TCGA-BR-4280-01 17 21731489 21731489 C - UBBP4 Frame_Shift_Del p.D191Ifs*35 0.31 TCGA-BR-4280-01 17 2200545 2200545 G A SMG6 Missense_Mutation p.R715C 0.46 deleterious(0) possibly_damaging(0.766) TCGA-BR-4280-01 17 25909717 25909717 G A KSR1 Missense_Mutation p.R52Q 0.44 tolerated(0.32) benign(0.006) TCGA-BR-4280-01 17 2601713 2601713 C - CLUH Frame_Shift_Del p.D442Tfs*12 0.25 TCGA-BR-4280-01 17 26821457 26821457 C T SLC13A2 Missense_Mutation p.T461M 0.34 tolerated(0.05) benign(0.149) TCGA-BR-4280-01 17 27047808 27047810 AAG - RPL23A In_Frame_Del p.K39del 0.33 TCGA-BR-4280-01 17 27869581 27869581 T C TAOK1 Silent p.I849I 0.20 TCGA-BR-4280-01 17 31087632 31087632 C T MYO1D Missense_Mutation p.R350H 0.34 deleterious(0.01) probably_damaging(0.99) TCGA-BR-4280-01 17 31260227 31260227 A G TMEM98 Missense_Mutation p.Q56R 0.28 tolerated(0.44) benign(0.227) TCGA-BR-4280-01 17 33679651 33679651 A G SLFN11 Silent p.A810A 0.26 TCGA-BR-4280-01 17 34862834 34862834 A G MYO19 Missense_Mutation p.Y538H 0.42 deleterious(0) probably_damaging(1) TCGA-BR-4280-01 17 35298059 35298059 C T LHX1 Missense_Mutation p.R184C 0.30 deleterious(0) probably_damaging(0.996) TCGA-BR-4280-01 17 36047354 36047354 G A HNF1B 3'UTR 0.31 TCGA-BR-4280-01 17 36958376 36958376 A G CWC25 Missense_Mutation p.V416A 0.37 tolerated(1) benign(0) TCGA-BR-4280-01 17 38252308 38252309 TC - NR1D1 Frame_Shift_Del p.K213Afs*6 0.33 TCGA-BR-4280-01 17 38633825 38633828 CAGG - TNS4 3'UTR 0.49 TCGA-BR-4280-01 17 38710799 38710799 T - CCR7 3'UTR 0.35 TCGA-BR-4280-01 17 38978786 38978786 C A KRT10 Nonsense_Mutation p.G18* 0.44 TCGA-BR-4280-01 17 39123064 39123064 T C KRT39 Silent p.P15P 0.31 TCGA-BR-4280-01 17 40152526 40152526 G A DNAJC7 Missense_Mutation p.A47V 0.31 deleterious(0) probably_damaging(1) TCGA-BR-4280-01 17 41719304 41719304 A C MEOX1 Missense_Mutation p.S247A 0.28 deleterious(0.01) probably_damaging(0.956) TCGA-BR-4280-01 17 41835990 41835990 G A SOST Silent p.L40L 0.33 TCGA-BR-4280-01 17 42328633 42328633 A G SLC4A1 Missense_Mutation p.V850A 0.17 deleterious(0.01) benign(0.12) TCGA-BR-4280-01 17 42483368 42483368 A G GPATCH8 Missense_Mutation p.S182P 0.48 deleterious(0) probably_damaging(0.994) TCGA-BR-4280-01 17 43226471 43226471 T C HEXIM1 5'UTR 0.22 TCGA-BR-4280-01 17 4689224 4689224 C T VMO1 Intron 0.46 TCGA-BR-4280-01 17 48245314 48245314 G A SGCA Missense_Mutation p.A107T 0.40 deleterious(0) benign(0.434) TCGA-BR-4280-01 17 48356598 48356598 C - TMEM92 Frame_Shift_Del p.P138Lfs*86 0.33 TCGA-BR-4280-01 17 4858519 4858519 C A ENO3 Silent p.A198A 0.39 TCGA-BR-4280-01 17 48631632 48631632 A G SPATA20 Missense_Mutation p.S660G 0.39 deleterious(0) probably_damaging(0.939) TCGA-BR-4280-01 17 48678110 48678110 G A CACNA1G Silent p.A1238A 0.32 TCGA-BR-4280-01 17 4889533 4889533 G T CAMTA2 Silent p.P18P 0.47 TCGA-BR-4280-01 17 4927147 4927147 C - KIF1C Frame_Shift_Del p.P1006Lfs*82 0.35 TCGA-BR-4280-01 17 56355248 56355248 G T MPO Missense_Mutation p.L382M 0.41 tolerated(0.48) benign(0.028) TCGA-BR-4280-01 17 58033900 58033900 A - RNFT1 Frame_Shift_Del p.F340Lfs*4 0.31 TCGA-BR-4280-01 17 61889307 61889307 A G DDX42 Missense_Mutation p.T472A 0.36 deleterious(0.03) possibly_damaging(0.633) TCGA-BR-4280-01 17 61972278 61972278 T C CSH1 3'UTR 0.32 TCGA-BR-4280-01 17 6348605 6348605 G A FAM64A Missense_Mutation p.V59I 0.39 deleterious(0.02) probably_damaging(0.939) TCGA-BR-4280-01 17 65944394 65944394 T C BPTF Missense_Mutation p.L2633P 0.17 probably_damaging(0.996) TCGA-BR-4280-01 17 72943232 72943232 G T OTOP3 Missense_Mutation p.G428C 0.47 tolerated(0.14) probably_damaging(0.997) TCGA-BR-4280-01 17 73748363 73748363 G A ITGB4 Missense_Mutation p.R1301H 0.34 deleterious(0.03) probably_damaging(0.999) TCGA-BR-4280-01 17 73750720 73750720 T C ITGB4 Missense_Mutation p.M1461T 0.09 tolerated_low_confidence(0.94) benign(0.044) TCGA-BR-4280-01 17 73888350 73888350 G A TRIM65 Nonsense_Mutation p.Q248* 0.63 TCGA-BR-4280-01 17 74097459 74097459 T C EXOC7 Splice_Site p.X104_splice 0.30 TCGA-BR-4280-01 17 76395508 76395508 G A PGS1 Silent p.T197T 0.44 TCGA-BR-4280-01 17 77073557 77073557 T - ENGASE Frame_Shift_Del p.S66Pfs*53 0.36 TCGA-BR-4280-01 17 77922698 77922698 T C TBC1D16 Missense_Mutation p.E505G 0.35 deleterious(0.04) possibly_damaging(0.7) TCGA-BR-4280-01 17 78321528 78321528 C T RNF213 Silent p.L3131L 0.40 TCGA-BR-4280-01 17 78328440 78328440 A G RNF213 Intron 0.50 TCGA-BR-4280-01 17 80369341 80369341 G A OGFOD3 Missense_Mutation p.R124W 0.41 deleterious(0.03) possibly_damaging(0.854) TCGA-BR-4280-01 17 80398968 80398968 C A HEXDC Missense_Mutation p.P360T 0.45 deleterious_low_confidence(0.02) benign(0.373) TCGA-BR-4280-01 17 8383818 8383818 G A MYH10 Missense_Mutation p.R1764C 0.40 possibly_damaging(0.866) TCGA-BR-4280-01 17 8707380 8707380 C T PIK3R6 Missense_Mutation p.R695H 0.31 deleterious(0) probably_damaging(0.999) TCGA-BR-4280-01 18 12955468 12955468 A G SEH1L Missense_Mutation p.S57G 0.05 tolerated(0.2) benign(0.029) TCGA-BR-4280-01 18 13124843 13124843 A G CEP192 3'UTR 0.46 TCGA-BR-4280-01 18 13621221 13621221 T C LDLRAD4 Missense_Mutation p.F96S 0.38 deleterious(0) probably_damaging(0.995) TCGA-BR-4280-01 18 20570945 20570945 T G RBBP8 Missense_Mutation p.C285G 0.10 tolerated(0.31) benign(0.104) TCGA-BR-4280-01 18 24496988 24496988 G A CHST9 Silent p.Y189Y 0.36 TCGA-BR-4280-01 18 28654723 28654723 C T DSC2 Missense_Mutation p.G605D 0.33 deleterious(0.03) probably_damaging(1) TCGA-BR-4280-01 18 2925364 2925364 G A LPIN2 Missense_Mutation p.P599L 0.35 tolerated(0.44) benign(0) TCGA-BR-4280-01 18 29410772 29410772 A G TRAPPC8 Silent p.F1418F 0.45 TCGA-BR-4280-01 18 31319536 31319536 C A ASXL3 Missense_Mutation p.P723H 0.33 probably_damaging(0.999) TCGA-BR-4280-01 18 33800060 33800060 C T MOCOS Missense_Mutation p.R614W 0.38 deleterious(0) probably_damaging(0.999) TCGA-BR-4280-01 18 34205516 34205516 C - FHOD3 Frame_Shift_Del p.S336Vfs*138 0.35 TCGA-BR-4280-01 18 3457752 3457753 CT - TGIF1 Frame_Shift_Del p.L342Hfs*8 0.26 TCGA-BR-4280-01 18 43585486 43585486 T C PSTPIP2 Missense_Mutation p.I122M 0.22 deleterious(0.02) benign(0.128) TCGA-BR-4280-01 18 46385794 46385794 T G CTIF Missense_Mutation p.M556R 0.32 deleterious(0.01) probably_damaging(0.979) TCGA-BR-4280-01 18 47480799 47480800 - G MYO5B Frame_Shift_Ins p.K518Qfs*4 0.18 TCGA-BR-4280-01 18 48190611 48190611 C T MAPK4 Silent p.L95L 0.30 TCGA-BR-4280-01 18 56247010 56247010 G A ALPK2 Missense_Mutation p.S333F 0.14 deleterious(0) probably_damaging(0.999) TCGA-BR-4280-01 18 57103367 57103367 G A CCBE1 Missense_Mutation p.P332S 0.36 deleterious(0) probably_damaging(1) TCGA-BR-4280-01 18 59157845 59157845 T C CDH20 Missense_Mutation p.L20S 0.35 deleterious(0) possibly_damaging(0.617) TCGA-BR-4280-01 18 59221588 59221588 C T CDH20 Missense_Mutation p.A689V 0.38 tolerated(0.26) benign(0.068) TCGA-BR-4280-01 18 59221697 59221697 C T CDH20 Silent p.Y725Y 0.37 TCGA-BR-4280-01 18 77477859 77477859 G A CTDP1 Missense_Mutation p.A754T 0.42 tolerated(0.22) benign(0.032) TCGA-BR-4280-01 18 8076526 8076526 A C PTPRM Missense_Mutation p.E505D 0.26 deleterious(0.02) benign(0.348) TCGA-BR-4280-01 19 10463629 10463629 C T TYK2 Missense_Mutation p.R1058H 0.42 deleterious(0.02) benign(0.016) TCGA-BR-4280-01 19 11508219 11508219 T G RGL3 Missense_Mutation p.S607R 0.42 deleterious(0.02) unknown(0) TCGA-BR-4280-01 19 11618821 11618821 G - ECSIT Frame_Shift_Del p.Q261Sfs*5 0.39 TCGA-BR-4280-01 19 12090920 12090920 C T ZNF763 3'UTR 0.23 TCGA-BR-4280-01 19 12460790 12460790 T A ZNF442 Missense_Mutation p.I537F 0.38 deleterious(0.04) possibly_damaging(0.828) TCGA-BR-4280-01 19 14000035 14000035 A G C19orf57 Missense_Mutation p.L545P 0.33 deleterious(0) probably_damaging(0.955) TCGA-BR-4280-01 19 14910600 14910600 C T OR7C1 Missense_Mutation p.V117M 0.35 tolerated_low_confidence(0.06) benign(0.149) TCGA-BR-4280-01 19 17160619 17160619 A - HAUS8 3'UTR 0.11 TCGA-BR-4280-01 19 17438659 17438659 C T ANO8 Missense_Mutation p.V753M 0.41 deleterious(0.01) possibly_damaging(0.488) TCGA-BR-4280-01 19 17759368 17759368 G A UNC13A Missense_Mutation p.T563M 0.36 deleterious(0) probably_damaging(0.975) TCGA-BR-4280-01 19 19916883 19916883 T - ZNF506 Frame_Shift_Del p.K61Nfs*3 0.25 TCGA-BR-4280-01 19 20748509 20748509 A G ZNF737 5'UTR 0.40 TCGA-BR-4280-01 19 20806717 20806717 A T ZNF626 3'UTR 0.40 TCGA-BR-4280-01 19 2255302 2255302 T A JSRP1 Silent p.T4T 0.40 TCGA-BR-4280-01 19 33647411 33647411 T C WDR88 Silent p.H320H 0.41 TCGA-BR-4280-01 19 3527034 3527034 C G FZR1 Nonsense_Mutation p.Y148* 0.12 TCGA-BR-4280-01 19 36018750 36018750 G A SBSN Missense_Mutation p.A145V 0.40 tolerated(0.15) probably_damaging(0.961) TCGA-BR-4280-01 19 36594075 36594075 G T WDR62 Missense_Mutation p.K1160N 0.41 deleterious(0.04) possibly_damaging(0.678) TCGA-BR-4280-01 19 37130098 37130098 T A ZNF461 Missense_Mutation p.K383N 0.14 deleterious(0.01) probably_damaging(0.995) TCGA-BR-4280-01 19 37440970 37440970 T G ZNF568 Silent p.P305P 0.30 TCGA-BR-4280-01 19 39038982 39038982 G T RYR1 Missense_Mutation p.K4068N 0.37 benign(0.064) TCGA-BR-4280-01 19 39322070 39322070 G T ECH1 Missense_Mutation p.L47I 0.50 tolerated(0.43) benign(0.013) TCGA-BR-4280-01 19 39913905 39913906 - T PLEKHG2 Frame_Shift_Ins p.G738Wfs*21 0.26 TCGA-BR-4280-01 19 40828262 40828262 G T C19orf47 Missense_Mutation p.L266M 0.57 deleterious(0) probably_damaging(0.999) TCGA-BR-4280-01 19 44096011 44096011 A G IRGQ 3'UTR 0.22 TCGA-BR-4280-01 19 44661951 44661951 A C ZNF234 Missense_Mutation p.K594N 0.04 deleterious(0) probably_damaging(1) TCGA-BR-4280-01 19 45262880 45262880 G - BCL3 3'UTR 0.32 TCGA-BR-4280-01 19 45716496 45716496 G - EXOC3L2 Frame_Shift_Del p.P354Lfs*49 0.28 TCGA-BR-4280-01 19 46351244 46351244 G A SYMPK Missense_Mutation p.R148W 0.34 deleterious(0) possibly_damaging(0.899) TCGA-BR-4280-01 19 46522617 46522617 G A PGLYRP1 Missense_Mutation p.A157V 0.37 tolerated(0.39) benign(0.263) TCGA-BR-4280-01 19 46998154 46998154 G A PNMAL2 Missense_Mutation p.A190V 0.38 tolerated(0.26) benign(0.121) TCGA-BR-4280-01 19 48807230 48807230 A G CCDC114 Missense_Mutation p.L241P 0.37 tolerated(0.08) benign(0.103) TCGA-BR-4280-01 19 49674945 49674945 T C TRPM4 Silent p.S323S 0.14 TCGA-BR-4280-01 19 49850473 49850473 G - TEAD2 Frame_Shift_Del p.H299Mfs*12 0.37 TCGA-BR-4280-01 19 50363375 50363375 C T PTOV1 Missense_Mutation p.R392C 0.45 deleterious(0) probably_damaging(0.965) TCGA-BR-4280-01 19 50412513 50412513 T C NUP62 Silent p.A184A 0.36 TCGA-BR-4280-01 19 50882025 50882025 G A NR1H2 Missense_Mutation p.R240H 0.55 deleterious(0.02) possibly_damaging(0.615) TCGA-BR-4280-01 19 51165362 51165362 G A SHANK1 Nonsense_Mutation p.R2116* 0.43 TCGA-BR-4280-01 19 51190039 51190039 C T SHANK1 Missense_Mutation p.S807N 0.31 possibly_damaging(0.483) TCGA-BR-4280-01 19 51191203 51191203 A G SHANK1 Missense_Mutation p.M762T 0.33 benign(0.037) TCGA-BR-4280-01 19 51323227 51323227 T - KLK1 Frame_Shift_Del p.A188Pfs*6 0.27 TCGA-BR-4280-01 19 52034212 52034212 G T SIGLEC6 Silent p.A143A 0.33 TCGA-BR-4280-01 19 5286136 5286136 C A PTPRS Missense_Mutation p.G6C 0.42 tolerated_low_confidence(0.11) possibly_damaging(0.614) TCGA-BR-4280-01 19 53770467 53770467 C A VN1R4 Missense_Mutation p.G151V 0.19 tolerated(0.05) benign(0.115) TCGA-BR-4280-01 19 53885287 53885287 T C ZNF525 3'UTR 0.24 TCGA-BR-4280-01 19 54314476 54314476 C T NLRP12 Missense_Mutation p.R146H 0.12 deleterious(0) probably_damaging(0.999) TCGA-BR-4280-01 19 55530055 55530055 A G GP6 Missense_Mutation p.L230P 0.33 deleterious_low_confidence(0.01) benign(0.078) TCGA-BR-4280-01 19 55812988 55812988 A G BRSK1 Missense_Mutation p.R263G 0.30 deleterious(0) benign(0.415) TCGA-BR-4280-01 19 57646555 57646555 T - ZIM3 Frame_Shift_Del p.I384Sfs*49 0.29 TCGA-BR-4280-01 19 57839258 57839258 G - ZNF543 Frame_Shift_Del p.K145Sfs*6 0.16 TCGA-BR-4280-01 19 6381412 6381412 C T GTF2F1 Missense_Mutation p.E326K 0.32 tolerated(0.4) possibly_damaging(0.656) TCGA-BR-4280-01 19 7518449 7518449 G A ARHGEF18 Missense_Mutation p.G463D 0.39 tolerated(0.09) benign(0.048) TCGA-BR-4280-01 19 7598461 7598461 A G MCOLN1 Missense_Mutation p.Q543R 0.40 tolerated(0.07) benign(0.298) TCGA-BR-4280-01 19 7830511 7830511 C T CLEC4M Intron 0.11 TCGA-BR-4280-01 19 7998751 7998751 G A TIMM44 Silent p.N227N 0.31 TCGA-BR-4280-01 19 8176624 8176624 C T FBN3 Missense_Mutation p.R1331Q 0.33 tolerated(0.76) benign(0.009) TCGA-BR-4280-01 19 9406969 9406969 C T ZNF699 Missense_Mutation p.A371T 0.38 tolerated(0.09) possibly_damaging(0.545) TCGA-BR-4280-01 1 101186193 101186193 A G VCAM1 Missense_Mutation p.T76A 0.40 tolerated(0.09) benign(0.008) TCGA-BR-4280-01 1 101339425 101339425 A - EXTL2 3'UTR 0.27 TCGA-BR-4280-01 1 10177642 10177642 A - UBE4B Frame_Shift_Del p.A444Hfs*14 0.36 TCGA-BR-4280-01 1 109242695 109242695 T - PRPF38B 3'UTR 0.29 TCGA-BR-4280-01 1 111494604 111494604 G A LRIF1 Missense_Mutation p.T301M 0.33 tolerated(0.1) probably_damaging(0.968) TCGA-BR-4280-01 1 111826726 111826726 G T CHIAP2 RNA 0.18 TCGA-BR-4280-01 1 113237103 113237103 A G MOV10 Missense_Mutation p.T442A 0.21 tolerated(0.12) benign(0.002) TCGA-BR-4280-01 1 113253964 113253964 G T PPM1J Missense_Mutation p.L324I 0.24 tolerated(0.08) benign(0.16) TCGA-BR-4280-01 1 12920127 12920127 G A PRAMEF2 Splice_Site p.X289_splice 0.29 TCGA-BR-4280-01 1 14149681 14149681 G A PRDM2 3'UTR 0.32 TCGA-BR-4280-01 1 147087679 147087680 AC - BCL9 Frame_Shift_Del p.T213Rfs*17 0.35 TCGA-BR-4280-01 1 149916793 149916793 C T OTUD7B Missense_Mutation p.A499T 0.42 tolerated(0.21) benign(0.098) TCGA-BR-4280-01 1 151259991 151259991 C T ZNF687 Silent p.N408N 0.47 TCGA-BR-4280-01 1 151518351 151518351 T C TUFT1 Intron 0.26 TCGA-BR-4280-01 1 152082434 152082434 G A TCHH Nonsense_Mutation p.Q1087* 0.30 TCGA-BR-4280-01 1 152188549 152188549 G A HRNR Silent p.S1852S 0.14 TCGA-BR-4280-01 1 154522742 154522742 T - UBE2Q1 3'UTR 0.33 TCGA-BR-4280-01 1 154680627 154680627 G A KCNN3 Missense_Mutation p.P674L 0.36 deleterious(0) probably_damaging(0.998) TCGA-BR-4280-01 1 154698452 154698452 T A KCNN3 Missense_Mutation p.E547D 0.41 deleterious(0) benign(0.437) TCGA-BR-4280-01 1 155168382 155168382 C A THBS3 Missense_Mutation p.G631V 0.38 deleterious(0) probably_damaging(0.999) TCGA-BR-4280-01 1 155255714 155255714 G A HCN3 Missense_Mutation p.G479D 0.48 deleterious(0.04) benign(0.006) TCGA-BR-4280-01 1 155257084 155257084 G A HCN3 Missense_Mutation p.R533H 0.40 deleterious(0) possibly_damaging(0.808) TCGA-BR-4280-01 1 155270698 155270698 G A PKLR Intron 0.52 TCGA-BR-4280-01 1 155308000 155308000 T - ASH1L Frame_Shift_Del p.T2895Qfs*44 0.33 TCGA-BR-4280-01 1 157557696 157557696 T C FCRL4 Missense_Mutation p.N174S 0.29 tolerated(0.8) benign(0.388) TCGA-BR-4280-01 1 158064931 158064931 C T KIRREL 3'UTR 0.33 TCGA-BR-4280-01 1 15813917 15813917 C T CELA2B Silent p.N259N 0.29 TCGA-BR-4280-01 1 158368769 158368769 A G OR10T2 Missense_Mutation p.L163P 0.22 deleterious(0.04) probably_damaging(1) TCGA-BR-4280-01 1 15890807 15890807 T C DNAJC16 Silent p.A517A 0.32 TCGA-BR-4280-01 1 159176186 159176186 G T DARC Silent p.L321L 0.43 TCGA-BR-4280-01 1 15986909 15986909 A G RSC1A1 Silent p.K182K 0.28 TCGA-BR-4280-01 1 159900128 159900128 C - IGSF9 Frame_Shift_Del p.V639Yfs*114 0.33 TCGA-BR-4280-01 1 1638926 1638926 G A CDK11A Silent p.G389G 0.39 TCGA-BR-4280-01 1 16945566 16945566 C T RP5-1182A14.5 3'Flank 0.12 TCGA-BR-4280-01 1 171310826 171310826 G A FMO4 Missense_Mutation p.A509T 0.09 tolerated(0.52) benign(0.015) TCGA-BR-4280-01 1 175067511 175067511 G C TNN Missense_Mutation p.E633D 0.41 tolerated(0.05) probably_damaging(0.996) TCGA-BR-4280-01 1 177250122 177250122 C T BRINP2 Missense_Mutation p.P604S 0.40 deleterious(0) probably_damaging(0.996) TCGA-BR-4280-01 1 181680124 181680124 C T CACNA1E Nonsense_Mutation p.R364* 0.38 TCGA-BR-4280-01 1 182908681 182908681 A - SHCBP1L Frame_Shift_Del p.Y260Mfs*84 0.64 TCGA-BR-4280-01 1 185703899 185703899 G A HMCN1 5'UTR 0.30 TCGA-BR-4280-01 1 186276875 186276875 A G PRG4 Missense_Mutation p.N675S 0.28 unknown(0) TCGA-BR-4280-01 1 198711490 198711490 A G PTPRC Silent p.Q897Q 0.07 TCGA-BR-4280-01 1 200822407 200822407 A - CAMSAP2 Frame_Shift_Del p.T1204Lfs*23 0.27 TCGA-BR-4280-01 1 202300886 202300886 A - UBE2T 3'UTR 0.38 TCGA-BR-4280-01 1 203316677 203316677 C A FMOD Missense_Mutation p.G241V 0.38 tolerated(0.08) benign(0.245) TCGA-BR-4280-01 1 204168355 204168355 C A GOLT1A Missense_Mutation p.G110C 0.38 deleterious(0) probably_damaging(0.941) TCGA-BR-4280-01 1 204588803 204588803 C T LRRN2 Silent p.S106S 0.39 TCGA-BR-4280-01 1 205238824 205238824 T G TMCC2 Silent p.G498G 0.14 TCGA-BR-4280-01 1 205241213 205241213 C T TMCC2 Silent p.S697S 0.26 TCGA-BR-4280-01 1 205760599 205760599 G A SLC41A1 3'UTR 0.29 TCGA-BR-4280-01 1 207241005 207241006 - G PFKFB2 Frame_Shift_Ins p.K267Efs*5 0.26 TCGA-BR-4280-01 1 214832209 214832209 G A CENPF Silent p.P2993P 0.39 TCGA-BR-4280-01 1 215916618 215916618 T G USH2A Missense_Mutation p.T3817P 0.34 benign(0.022) TCGA-BR-4280-01 1 226125285 226125285 C T LEFTY2 Silent p.S319S 0.23 TCGA-BR-4280-01 1 227174190 227174190 C A ADCK3 Missense_Mutation p.L566M 0.12 tolerated(0.06) possibly_damaging(0.844) TCGA-BR-4280-01 1 227920624 227920624 G A JMJD4 Silent p.S355S 0.29 TCGA-BR-4280-01 1 231488893 231488894 - T SPRTN Frame_Shift_Ins p.I422Yfs*11 0.25 TCGA-BR-4280-01 1 233518485 233518485 T - MLK4 3'UTR 0.28 TCGA-BR-4280-01 1 235505913 235505913 A - GGPS1 Frame_Shift_Del p.K245Nfs*10 0.35 TCGA-BR-4280-01 1 235914579 235914579 G A LYST Missense_Mutation p.L2571F 0.32 tolerated(0.19) benign(0.005) TCGA-BR-4280-01 1 23636875 23636875 T - HNRNPR 3'UTR 0.50 TCGA-BR-4280-01 1 23836471 23836471 T C E2F2 Silent p.P405P 0.29 TCGA-BR-4280-01 1 24083515 24083515 T C TCEB3 Silent p.P745P 0.39 TCGA-BR-4280-01 1 24125170 24125170 G A GALE Missense_Mutation p.R58C 0.40 deleterious(0.01) benign(0) TCGA-BR-4280-01 1 24408528 24408528 G A MYOM3 Missense_Mutation p.A748V 0.46 deleterious(0.01) benign(0.217) TCGA-BR-4280-01 1 244214668 244214668 T - ZBTB18 5'UTR 0.30 TCGA-BR-4280-01 1 248059733 248059733 C - OR2W3 Frame_Shift_Del p.L284Sfs*14 0.30 TCGA-BR-4280-01 1 248224181 248224181 C A OR2L3 Silent p.S66S 0.35 TCGA-BR-4280-01 1 248263381 248263381 A G OR2L13 Missense_Mutation p.K235R 0.41 tolerated(0.06) probably_damaging(1) TCGA-BR-4280-01 1 2526293 2526293 G A MMEL1 Nonsense_Mutation p.Q542* 0.41 TCGA-BR-4280-01 1 26448694 26448694 G T PDIK1L Missense_Mutation p.A218S 0.42 deleterious(0.02) possibly_damaging(0.902) TCGA-BR-4280-01 1 26582097 26582097 G A CEP85 Missense_Mutation p.S215N 0.36 tolerated(0.66) benign(0.001) TCGA-BR-4280-01 1 32119201 32119202 - G COL16A1 Frame_Shift_Ins p.G1538Rfs*42 0.32 TCGA-BR-4280-01 1 3328152 3328152 C - PRDM16 Frame_Shift_Del p.S466Afs*3 0.37 TCGA-BR-4280-01 1 33585749 33585749 T C ADC Missense_Mutation p.V450A 0.18 tolerated(0.15) benign(0.015) TCGA-BR-4280-01 1 33841025 33841025 C T PHC2 Missense_Mutation p.R39H 0.31 deleterious(0.03) benign(0.032) TCGA-BR-4280-01 1 34006749 34006749 T C CSMD2 Silent p.G3002G 0.32 TCGA-BR-4280-01 1 34071015 34071015 C A CSMD2 Missense_Mutation p.R2135S 0.08 tolerated(0.13) benign(0.216) TCGA-BR-4280-01 1 34330367 34330367 A - HMGB4 3'UTR 0.27 TCGA-BR-4280-01 1 3638707 3638707 G A TP73 Silent p.A184A 0.28 TCGA-BR-4280-01 1 37948856 37948856 G A ZC3H12A Missense_Mutation p.A482T 0.38 tolerated(0.71) benign(0.004) TCGA-BR-4280-01 1 40230378 40230378 G T BMP8B Missense_Mutation p.P262H 0.20 deleterious(0.01) benign(0.076) TCGA-BR-4280-01 1 43772910 43772910 C - TIE1 Frame_Shift_Del p.P248Lfs*117 0.35 TCGA-BR-4280-01 1 44064544 44064544 G A PTPRF Missense_Mutation p.G758E 0.25 deleterious(0.02) possibly_damaging(0.903) TCGA-BR-4280-01 1 44447544 44447544 A G B4GALT2 Missense_Mutation p.H195R 0.32 deleterious(0) probably_damaging(0.998) TCGA-BR-4280-01 1 44684086 44684086 G A DMAP1 Missense_Mutation p.R166H 0.41 deleterious(0) possibly_damaging(0.588) TCGA-BR-4280-01 1 45479751 45479752 - GA UROD Intron 0.25 TCGA-BR-4280-01 1 45671791 45671791 C T ZSWIM5 Missense_Mutation p.A78T 0.64 deleterious(0) probably_damaging(0.961) TCGA-BR-4280-01 1 47149030 47149030 T C EFCAB14 Silent p.P418P 0.38 TCGA-BR-4280-01 1 53459392 53459392 A - SCP2 Intron 0.24 TCGA-BR-4280-01 1 59811947 59811947 G A FGGY Nonsense_Mutation p.W114* 0.18 TCGA-BR-4280-01 1 6203990 6203990 C A CHD5 Nonsense_Mutation p.E646* 0.41 TCGA-BR-4280-01 1 6257785 6257785 T - RPL22 Frame_Shift_Del p.K15Rfs*5 0.53 TCGA-BR-4280-01 1 62718875 62718875 C T KANK4 Missense_Mutation p.C849Y 0.31 deleterious(0) probably_damaging(0.951) TCGA-BR-4280-01 1 63284744 63284744 A - ATG4C Frame_Shift_Del p.K156Nfs*23 0.28 TCGA-BR-4280-01 1 8424823 8424823 C T RERE Missense_Mutation p.R508H 0.33 probably_damaging(0.997) TCGA-BR-4280-01 1 84373183 84373183 G T TTLL7 Missense_Mutation p.H650N 0.37 tolerated(0.29) benign(0) TCGA-BR-4280-01 1 85424271 85424271 T G MCOLN2 Missense_Mutation p.S118R 0.28 tolerated(0.05) probably_damaging(0.964) TCGA-BR-4280-01 1 87031503 87031504 - A CLCA4 Frame_Shift_Ins p.T254Nfs*3 0.29 TCGA-BR-4280-01 1 89206848 89206848 A - PKN2 Frame_Shift_Del p.S78Vfs*5 0.29 TCGA-BR-4280-01 1 89586917 89586917 T C GBP2 Missense_Mutation p.K76R 0.37 deleterious(0.01) possibly_damaging(0.905) TCGA-BR-4280-01 1 92754658 92754658 T C GLMN Missense_Mutation p.T149A 0.44 tolerated(0.29) benign(0.262) TCGA-BR-4280-01 1 94668131 94668131 T - ARHGAP29 Frame_Shift_Del p.K371Sfs*12 0.34 TCGA-BR-4280-01 20 11898985 11898985 C T BTBD3 Missense_Mutation p.T21M 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.609) TCGA-BR-4280-01 20 13797842 13797842 A - NDUFAF5 Frame_Shift_Del p.K343Nfs*30 0.26 TCGA-BR-4280-01 20 18608856 18608856 T C DTD1 Silent p.T152T 0.13 TCGA-BR-4280-01 20 23066469 23066469 C - CD93 Frame_Shift_Del p.E121Rfs*79 0.40 TCGA-BR-4280-01 20 24993453 24993453 C T ACSS1 Missense_Mutation p.A568T 0.32 deleterious(0.01) benign(0.192) TCGA-BR-4280-01 20 26084304 26084304 G T NCOR1P1 RNA 0.15 TCGA-BR-4280-01 20 30345300 30345300 T G TPX2 Silent p.S7S 0.15 TCGA-BR-4280-01 20 30411335 30411335 C T MYLK2 Silent p.T276T 0.27 TCGA-BR-4280-01 20 31577498 31577498 T - SUN5 Frame_Shift_Del p.M181Wfs*5 0.26 TCGA-BR-4280-01 20 35521337 35521337 A C SAMHD1 Nonstop_Mutation p.*627Gext*17 0.23 TCGA-BR-4280-01 20 3686656 3686656 C T SIGLEC1 Silent p.P147P 0.22 TCGA-BR-4280-01 20 4202221 4202221 G A ADRA1D Silent p.C556C 0.37 TCGA-BR-4280-01 20 43142670 43142670 G A SERINC3 Silent p.L17L 0.34 TCGA-BR-4280-01 20 44486535 44486535 A C ZSWIM3 Missense_Mutation p.N24T 0.25 tolerated(0.38) benign(0.007) TCGA-BR-4280-01 20 45702826 45702826 G T EYA2 Missense_Mutation p.Q171H 0.20 deleterious(0) probably_damaging(0.93) TCGA-BR-4280-01 20 47589799 47589799 A C ARFGEF2 Missense_Mutation p.E548A 0.08 tolerated(0.07) benign(0.038) TCGA-BR-4280-01 20 47649737 47649737 C T ARFGEF2 3'UTR 0.24 TCGA-BR-4280-01 20 48127617 48127617 C - PTGIS Frame_Shift_Del p.A436Rfs*31 0.26 TCGA-BR-4280-01 20 48166644 48166644 A G PTGIS Missense_Mutation p.F53L 0.24 deleterious(0) probably_damaging(0.993) TCGA-BR-4280-01 20 49225479 49225479 G A FAM65C Silent p.Y214Y 0.47 TCGA-BR-4280-01 20 52830939 52830939 A C PFDN4 Missense_Mutation p.K25T 0.19 tolerated(0.07) benign(0.05) TCGA-BR-4280-01 20 55027197 55027197 C A CASS4 Missense_Mutation p.P322H 0.14 tolerated(0.1) possibly_damaging(0.627) TCGA-BR-4280-01 20 57243094 57243094 C A STX16 Missense_Mutation p.L102I 0.17 deleterious(0.01) possibly_damaging(0.899) TCGA-BR-4280-01 20 60794811 60794813 GAA - HRH3 In_Frame_Del p.F72del 0.18 TCGA-BR-4280-01 20 61151587 61151587 C T C20orf166 Intron 0.29 TCGA-BR-4280-01 20 62407094 62407094 C T ZBTB46 Missense_Mutation p.V387M 0.25 tolerated(0.67) benign(0.017) TCGA-BR-4280-01 20 62705590 62705590 G A RGS19 Silent p.C123C 0.19 TCGA-BR-4280-01 20 62730104 62730104 C T OPRL1 Silent p.D355D 0.29 TCGA-BR-4280-01 21 10951287 10951287 A C TPTE Missense_Mutation p.L142R 0.05 deleterious(0.01) probably_damaging(0.962) TCGA-BR-4280-01 21 28338331 28338331 C T ADAMTS5 Missense_Mutation p.R127Q 0.38 tolerated(0.69) benign(0.007) TCGA-BR-4280-01 21 30316746 30316746 C T LTN1 Missense_Mutation p.G1360D 0.15 deleterious(0) possibly_damaging(0.479) TCGA-BR-4280-01 21 31874258 31874258 C T KRTAP19-5 Missense_Mutation p.G51R 0.41 tolerated_low_confidence(0.44) unknown(0) TCGA-BR-4280-01 21 37605234 37605234 C T DOPEY2 Missense_Mutation p.A828V 0.40 deleterious(0.03) benign(0.406) TCGA-BR-4280-01 21 37710204 37710204 G A MORC3 Silent p.A140A 0.43 TCGA-BR-4280-01 21 40558989 40558989 A - BRWD1 Frame_Shift_Del p.L2309* 0.33 TCGA-BR-4280-01 21 44474020 44474020 G A CBS Silent p.F542F 0.33 TCGA-BR-4280-01 21 46595860 46595860 G A ADARB1 Missense_Mutation p.A82T 0.33 tolerated(0.08) probably_damaging(0.998) TCGA-BR-4280-01 22 19495010 19495010 A G CDC45 Missense_Mutation p.K341R 0.38 deleterious(0.02) benign(0.062) TCGA-BR-4280-01 22 19951793 19951793 C T COMT Missense_Mutation p.R196W 0.41 tolerated(0.07) probably_damaging(0.975) TCGA-BR-4280-01 22 20103762 20103762 A G TRMT2A Missense_Mutation p.L133P 0.45 tolerated(0.11) possibly_damaging(0.611) TCGA-BR-4280-01 22 21377597 21377597 T - P2RX6 Frame_Shift_Del p.F225Lfs*40 0.39 TCGA-BR-4280-01 22 21800714 21800714 C T HIC2 Silent p.C510C 0.53 TCGA-BR-4280-01 22 24124456 24124456 C - MMP11 Frame_Shift_Del p.A375Hfs*9 0.35 TCGA-BR-4280-01 22 29141880 29141880 A G HSCB Missense_Mutation p.E151G 0.41 deleterious(0.04) benign(0.416) TCGA-BR-4280-01 22 29885456 29885456 G T NEFH Missense_Mutation p.K609N 0.37 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-BR-4280-01 22 30125551 30125551 T C CABP7 Missense_Mutation p.M214T 0.31 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-BR-4280-01 22 30695501 30695501 G A TBC1D10A Missense_Mutation p.R124W 0.44 deleterious(0) probably_damaging(1) TCGA-BR-4280-01 22 32880008 32880008 A C FBXO7 Missense_Mutation p.H181P 0.04 deleterious(0.04) possibly_damaging(0.885) TCGA-BR-4280-01 22 35812348 35812348 G A MCM5 Missense_Mutation p.R455H 0.42 deleterious(0) probably_damaging(0.999) TCGA-BR-4280-01 22 40366977 40366977 C T GRAP2 Silent p.S294S 0.48 TCGA-BR-4280-01 22 41832689 41832689 G A TOB2 Missense_Mutation p.R221C 0.59 tolerated(0.07) probably_damaging(0.912) TCGA-BR-4280-01 22 41973879 41973879 T C PMM1 Missense_Mutation p.Y200C 0.43 deleterious(0.02) benign(0.374) TCGA-BR-4280-01 22 42458950 42458950 G - NAGA Frame_Shift_Del p.L280Sfs*2 0.35 TCGA-BR-4280-01 22 42896655 42896655 G A SERHL RNA 0.30 TCGA-BR-4280-01 22 44277498 44277498 A G PNPLA5 Missense_Mutation p.L380P 0.38 deleterious(0) probably_damaging(0.959) TCGA-BR-4280-01 22 45182488 45182488 T C ARHGAP8 Splice_Site p.X149_splice 0.23 TCGA-BR-4280-01 2 101010201 101010201 C T CHST10 Missense_Mutation p.E193K 0.46 tolerated(0.18) possibly_damaging(0.883) TCGA-BR-4280-01 2 101656720 101656720 G A TBC1D8 Missense_Mutation p.R319W 0.37 deleterious(0.03) possibly_damaging(0.832) TCGA-BR-4280-01 2 109400209 109400209 T C RANBP2 Missense_Mutation p.L3176P 0.45 deleterious(0.02) probably_damaging(1) TCGA-BR-4280-01 2 110332309 110332309 A G SEPT10 Missense_Mutation p.F150S 0.40 deleterious(0) probably_damaging(0.999) TCGA-BR-4280-01 2 113416440 113416441 - A SLC20A1 Frame_Shift_Ins p.N276Efs*2 0.26 TCGA-BR-4280-01 2 113671381 113671382 - C IL37 Frame_Shift_Ins p.L34Pfs*31 0.23 TCGA-BR-4280-01 2 11755363 11755363 A G GREB1 Missense_Mutation p.D1090G 0.17 deleterious(0) probably_damaging(0.998) TCGA-BR-4280-01 2 128065338 128065338 C T MAP3K2 Silent p.P559P 0.45 TCGA-BR-4280-01 2 128477098 128477098 C T WDR33 Missense_Mutation p.R834Q 0.31 tolerated_low_confidence(0.52) possibly_damaging(0.614) TCGA-BR-4280-01 2 130832662 130832662 G A POTEF Missense_Mutation p.R795C 0.36 deleterious_low_confidence(0.02) probably_damaging(0.995) TCGA-BR-4280-01 2 131803636 131803636 G A ARHGEF4 Silent p.T649T 0.45 TCGA-BR-4280-01 2 131890528 131890528 T C PLEKHB2 Silent p.P129P 0.33 TCGA-BR-4280-01 2 133174707 133174707 T C GPR39 Missense_Mutation p.I31T 0.32 deleterious(0.02) possibly_damaging(0.683) TCGA-BR-4280-01 2 148683686 148683686 A - ACVR2A Frame_Shift_Del p.K437Rfs*5 0.67 TCGA-BR-4280-01 2 1647304 1647304 G C PXDN Missense_Mutation p.T1263S 0.33 deleterious(0) probably_damaging(0.933) TCGA-BR-4280-01 2 165997473 165997474 - G SCN3A Frame_Shift_Ins p.R570Kfs*4 0.35 TCGA-BR-4280-01 2 166246213 166246213 C T SCN2A Missense_Mutation p.T1966M 0.33 tolerated(0.05) probably_damaging(0.91) TCGA-BR-4280-01 2 168108385 168108385 G A XIRP2 Missense_Mutation p.G3495R 0.34 probably_damaging(1) TCGA-BR-4280-01 2 171242744 171242744 G A MYO3B Missense_Mutation p.A446T 0.30 deleterious(0) benign(0.243) TCGA-BR-4280-01 2 172337802 172337802 T A DCAF17 3'UTR 0.42 TCGA-BR-4280-01 2 172546719 172546719 G T DYNC1I2 Silent p.L18L 0.41 TCGA-BR-4280-01 2 172650186 172650186 A T SLC25A12 Missense_Mutation p.V466D 0.39 deleterious(0) probably_damaging(0.949) TCGA-BR-4280-01 2 179255915 179255915 C - OSBPL6 Frame_Shift_Del p.S833Lfs*31 0.28 TCGA-BR-4280-01 2 17962826 17962826 A G GEN1 Missense_Mutation p.M783V 0.45 tolerated(1) benign(0) TCGA-BR-4280-01 2 182400292 182400292 A C ITGA4 3'UTR 0.35 TCGA-BR-4280-01 2 190925074 190925074 G A MSTN Missense_Mutation p.A154V 0.45 deleterious(0) probably_damaging(0.981) TCGA-BR-4280-01 2 196602560 196602560 A - DNAH7 3'UTR 0.29 TCGA-BR-4280-01 2 201355178 201355178 G A KCTD18 Missense_Mutation p.A309V 0.36 tolerated_low_confidence(0.61) benign(0.001) TCGA-BR-4280-01 2 202149988 202149988 G T CASP8 Nonsense_Mutation p.G477* 0.36 TCGA-BR-4280-01 2 203420130 203420130 A - BMPR2 Frame_Shift_Del p.N583Tfs*44 0.44 TCGA-BR-4280-01 2 206641015 206641015 C A NRP2 Intron 0.34 TCGA-BR-4280-01 2 207174987 207174987 C T ZDBF2 Missense_Mutation p.A1912V 0.44 deleterious(0.02) possibly_damaging(0.483) TCGA-BR-4280-01 2 207175826 207175826 A - ZDBF2 Frame_Shift_Del p.K2193Rfs*57 0.24 TCGA-BR-4280-01 2 208477826 208477826 C T METTL21A Missense_Mutation p.E201K 0.10 tolerated(0.33) benign(0.06) TCGA-BR-4280-01 2 210650864 210650864 A T UNC80 Silent p.G225G 0.08 TCGA-BR-4280-01 2 212285296 212285296 T C ERBB4 Missense_Mutation p.K1002R 0.08 tolerated(0.27) benign(0.045) TCGA-BR-4280-01 2 215645475 215645475 T C BARD1 Missense_Mutation p.T375A 0.40 tolerated(0.3) benign(0.014) TCGA-BR-4280-01 2 217234942 217234942 G C MARCH4 Missense_Mutation p.C14W 0.44 deleterious_low_confidence(0) unknown(0) TCGA-BR-4280-01 2 220414535 220414535 G T TMEM198 Nonsense_Mutation p.G348* 0.42 TCGA-BR-4280-01 2 220474096 220474096 C A STK11IP Silent p.A657A 0.23 TCGA-BR-4280-01 2 230652352 230652352 G A TRIP12 Missense_Mutation p.R1547W 0.35 deleterious(0) probably_damaging(0.993) TCGA-BR-4280-01 2 231774722 231774722 C - GPR55 Frame_Shift_Del p.G319Afs*19 0.35 TCGA-BR-4280-01 2 232327984 232327986 GGA - NCL In_Frame_Del p.P21del 0.34 TCGA-BR-4280-01 2 237489246 237489246 G A ACKR3 Silent p.T46T 0.39 TCGA-BR-4280-01 2 239079047 239079047 A G ILKAP 3'UTR 0.40 TCGA-BR-4280-01 2 239159277 239159277 T C PER2 Missense_Mutation p.I1128V 0.18 tolerated(0.07) benign(0.244) TCGA-BR-4280-01 2 241700703 241700703 C A KIF1A Missense_Mutation p.W736C 0.35 deleterious(0) probably_damaging(0.991) TCGA-BR-4280-01 2 241726673 241726673 C T KIF1A Missense_Mutation p.V142M 0.54 deleterious(0) probably_damaging(1) TCGA-BR-4280-01 2 24484599 24484599 T - ITSN2 Frame_Shift_Del p.T790Pfs*2 0.25 TCGA-BR-4280-01 2 27157527 27157527 C T DPYSL5 Missense_Mutation p.A291V 0.45 deleterious(0) possibly_damaging(0.857) TCGA-BR-4280-01 2 27351926 27351926 G T ABHD1 Missense_Mutation p.G130V 0.47 deleterious(0) probably_damaging(0.998) TCGA-BR-4280-01 2 29135551 29135551 T G WDR43 Missense_Mutation p.V194G 0.47 tolerated(0.13) benign(0.017) TCGA-BR-4280-01 2 29293519 29293519 C T C2orf71 Silent p.P1203P 0.43 TCGA-BR-4280-01 2 37455474 37455474 T C CEBPZ Missense_Mutation p.T288A 0.08 tolerated(0.16) probably_damaging(0.998) TCGA-BR-4280-01 2 38977264 38977264 T C SRSF7 Missense_Mutation p.Y34C 0.37 deleterious(0.01) possibly_damaging(0.908) TCGA-BR-4280-01 2 39996850 39996850 C A THUMPD2 Missense_Mutation p.Q224H 0.37 deleterious(0) probably_damaging(0.988) TCGA-BR-4280-01 2 42284800 42284800 A G PKDCC Missense_Mutation p.K485R 0.46 deleterious(0.03) possibly_damaging(0.482) TCGA-BR-4280-01 2 55130609 55130609 T C EML6 Missense_Mutation p.Y1127H 0.35 deleterious(0.03) possibly_damaging(0.476) TCGA-BR-4280-01 2 55462017 55462019 GAA - RPS27A In_Frame_Del p.K83del 0.17 TCGA-BR-4280-01 2 61022147 61022147 C T PAPOLG Missense_Mutation p.R702C 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.899) TCGA-BR-4280-01 2 61721063 61721063 G T XPO1 Missense_Mutation p.P404H 0.33 tolerated(0.24) benign(0.01) TCGA-BR-4280-01 2 64327600 64327600 A G PELI1 Missense_Mutation p.Y79H 0.41 deleterious(0) probably_damaging(0.988) TCGA-BR-4280-01 2 71377061 71377061 A G MPHOSPH10 Silent p.V654V 0.46 TCGA-BR-4280-01 2 73678505 73678505 C T ALMS1 Silent p.S1616S 0.50 TCGA-BR-4280-01 2 74776634 74776634 G A LOXL3 Missense_Mutation p.T185M 0.50 tolerated(0.06) benign(0.168) TCGA-BR-4280-01 2 79384307 79384307 T C REG3A 3'UTR 0.34 TCGA-BR-4280-01 2 85280273 85280273 T C KCMF1 Missense_Mutation p.L296S 0.21 tolerated(0.08) benign(0.056) TCGA-BR-4280-01 2 86315957 86315957 C A POLR1A Missense_Mutation p.A193S 0.53 tolerated(0.97) benign(0.019) TCGA-BR-4280-01 2 97217702 97217702 A C ARID5A Silent p.A479A 0.36 TCGA-BR-4280-01 2 99977965 99977965 A - EIF5B Frame_Shift_Del p.N203Ifs*10 0.36 TCGA-BR-4280-01 3 101136515 101136515 A G SENP7 Missense_Mutation p.L135S 0.13 tolerated(0.18) probably_damaging(0.999) TCGA-BR-4280-01 3 10370646 10370646 G A ATP2B2 Missense_Mutation p.A1195V 0.39 tolerated_low_confidence(0.27) benign(0.367) TCGA-BR-4280-01 3 108773613 108773613 C - MORC1 Frame_Shift_Del p.G431Dfs*18 0.26 TCGA-BR-4280-01 3 113847734 113847734 G A DRD3 Silent p.P344P 0.42 TCGA-BR-4280-01 3 114058003 114058003 G - ZBTB20 Frame_Shift_Del p.P692Lfs*43 0.44 TCGA-BR-4280-01 3 126710241 126710241 T C PLXNA1 Silent p.D403D 0.36 TCGA-BR-4280-01 3 135721164 135721164 A - PPP2R3A Frame_Shift_Del p.T276Lfs*4 0.25 TCGA-BR-4280-01 3 137787113 137787113 G - DZIP1L Frame_Shift_Del p.P571Hfs*14 0.41 TCGA-BR-4280-01 3 139280118 139280118 C T NMNAT3 Missense_Mutation p.V128M 0.41 deleterious(0) probably_damaging(0.997) TCGA-BR-4280-01 3 14187433 14187433 C T XPC 3'UTR 0.24 TCGA-BR-4280-01 3 148872996 148872996 A C HPS3 Missense_Mutation p.K501N 0.36 tolerated(0.09) probably_damaging(0.978) TCGA-BR-4280-01 3 151164080 151164081 - T IGSF10 Frame_Shift_Ins p.S1230Kfs*8 0.33 TCGA-BR-4280-01 3 155838663 155838663 G A KCNAB1 Missense_Mutation p.G88D 0.12 deleterious(0.01) benign(0.062) TCGA-BR-4280-01 3 16269065 16269065 C T GALNT15 3'UTR 0.16 TCGA-BR-4280-01 3 164758862 164758862 A - SI Frame_Shift_Del p.F675Lfs*15 0.26 TCGA-BR-4280-01 3 165491219 165491219 T - BCHE Frame_Shift_Del p.N587Ifs*18 0.25 TCGA-BR-4280-01 3 170244644 170244644 G A SLC7A14 Missense_Mutation p.R28C 0.42 deleterious(0) probably_damaging(1) TCGA-BR-4280-01 3 180365986 180365986 T G CCDC39 Missense_Mutation p.E443D 0.32 tolerated(0.58) benign(0.061) TCGA-BR-4280-01 3 182790190 182790190 G T MCCC1 Missense_Mutation p.P152H 0.43 deleterious(0) probably_damaging(1) TCGA-BR-4280-01 3 183963113 183963113 C T ALG3 Missense_Mutation p.A160T 0.21 tolerated(0.91) benign(0.078) TCGA-BR-4280-01 3 184045694 184045694 C T EIF4G1 Missense_Mutation p.T1293M 0.43 deleterious(0) probably_damaging(0.997) TCGA-BR-4280-01 3 192517004 192517004 T - MB21D2 Frame_Shift_Del p.N216Mfs*11 0.26 TCGA-BR-4280-01 3 194147839 194147839 C T ATP13A3 Silent p.Q1030Q 0.26 TCGA-BR-4280-01 3 194167726 194167727 - T ATP13A3 Frame_Shift_Ins p.I476Nfs*23 0.24 TCGA-BR-4280-01 3 196736658 196736658 G A MFI2 Silent p.Y452Y 0.44 TCGA-BR-4280-01 3 3095601 3095601 A G CNTN4 Silent p.P974P 0.39 TCGA-BR-4280-01 3 32181769 32181769 G A GPD1L Missense_Mutation p.R139H 0.43 tolerated(0.07) probably_damaging(0.995) TCGA-BR-4280-01 3 361435 361435 C T CHL1 5'UTR 0.52 TCGA-BR-4280-01 3 419520 419520 A G CHL1 Missense_Mutation p.N591D 0.30 tolerated(0.2) benign(0.34) TCGA-BR-4280-01 3 46399019 46399019 A G CCR2 Translation_Start_Site p.M1? 0.13 tolerated_low_confidence(0.5) benign(0.003) TCGA-BR-4280-01 3 47143009 47143010 - A SETD2 Frame_Shift_Ins p.T1652Yfs*14 0.28 TCGA-BR-4280-01 3 49040002 49040002 G A P4HTM Missense_Mutation p.A233T 0.34 tolerated(0.15) possibly_damaging(0.903) TCGA-BR-4280-01 3 49755859 49755859 G A AMIGO3 Missense_Mutation p.A347V 0.21 deleterious(0.01) benign(0.215) TCGA-BR-4280-01 3 50005493 50005493 G A RBM6 Missense_Mutation p.R212H 0.41 tolerated(0.54) benign(0.005) TCGA-BR-4280-01 3 50251692 50251692 G - SLC38A3 RNA 0.46 TCGA-BR-4280-01 3 51413261 51413261 A - DOCK3 Frame_Shift_Del p.G1834Vfs*63 0.29 TCGA-BR-4280-01 3 51989642 51989642 A G GPR62 5'UTR 0.33 TCGA-BR-4280-01 3 52255367 52255367 G A TLR9 Missense_Mutation p.R1143C 0.44 deleterious(0.01) probably_damaging(0.927) TCGA-BR-4280-01 3 52257017 52257017 C - TLR9 Frame_Shift_Del p.E593Rfs*47 0.45 TCGA-BR-4280-01 3 52325846 52325846 C T GLYCTK Missense_Mutation p.R205C 0.41 deleterious(0) benign(0.008) TCGA-BR-4280-01 3 52486500 52486501 - T TNNC1 Frame_Shift_Ins p.N18Kfs*2 0.24 TCGA-BR-4280-01 3 52525384 52525384 G T NISCH Missense_Mutation p.Q1253H 0.41 tolerated(0.72) benign(0.188) TCGA-BR-4280-01 3 55508438 55508438 C T WNT5A Missense_Mutation p.R204H 0.45 deleterious(0) possibly_damaging(0.82) TCGA-BR-4280-01 3 57276921 57276921 A - APPL1 Frame_Shift_Del p.R154Efs*6 0.30 TCGA-BR-4280-01 3 58516335 58516335 C T ACOX2 Missense_Mutation p.G284S 0.19 tolerated(0.52) probably_damaging(0.991) TCGA-BR-4280-01 3 62204651 62204651 A G PTPRG Missense_Mutation p.Y761C 0.39 deleterious(0) probably_damaging(0.999) TCGA-BR-4280-01 3 63542315 63542315 C T SYNPR Silent p.F102F 0.41 TCGA-BR-4280-01 3 63981263 63981263 T C ATXN7 Missense_Mutation p.C589R 0.38 tolerated(0.27) benign(0.308) TCGA-BR-4280-01 3 65342221 65342221 G - MAGI1 Frame_Shift_Del p.E1408Sfs*27 0.31 TCGA-BR-4280-01 3 71027093 71027093 C T FOXP1 Missense_Mutation p.A414T 0.33 tolerated(0.41) benign(0.002) TCGA-BR-4280-01 3 71247410 71247410 C T FOXP1 Silent p.T41T 0.51 TCGA-BR-4280-01 3 93593009 93593009 A T PROS1 3'UTR 0.48 TCGA-BR-4280-01 3 93803180 93803180 G C NSUN3 Missense_Mutation p.A118P 0.29 deleterious(0) probably_damaging(0.991) TCGA-BR-4280-01 3 9944618 9944618 T C IL17RE Translation_Start_Site p.M1? 0.39 deleterious_low_confidence(0) probably_damaging(0.916) TCGA-BR-4280-01 4 100205902 100205903 - T ADH1A Frame_Shift_Ins p.N106Kfs*50 0.31 TCGA-BR-4280-01 4 103517339 103517339 A - NFKB1 Frame_Shift_Del p.S450Vfs*7 0.27 TCGA-BR-4280-01 4 106819158 106819158 C T NPNT Missense_Mutation p.P58S 0.26 deleterious(0) possibly_damaging(0.796) TCGA-BR-4280-01 4 108603286 108603286 A G PAPSS1 Missense_Mutation p.F185S 0.42 deleterious(0) probably_damaging(0.999) TCGA-BR-4280-01 4 110460714 110460714 C T SEC24B Intron 0.46 TCGA-BR-4280-01 4 114378394 114378394 G A CAMK2D Intron 0.33 TCGA-BR-4280-01 4 120057672 120057672 A - MYOZ2 5'UTR 0.37 TCGA-BR-4280-01 4 122756413 122756413 C T BBS7 Missense_Mutation p.G466D 0.42 deleterious(0.03) probably_damaging(0.987) TCGA-BR-4280-01 4 123283461 123283461 T - KIAA1109 3'UTR 0.19 TCGA-BR-4280-01 4 125631669 125631669 C T ANKRD50 5'UTR 0.38 TCGA-BR-4280-01 4 126239199 126239199 G A FAT4 Missense_Mutation p.A545T 0.09 benign(0.07) TCGA-BR-4280-01 4 126370559 126370559 T G FAT4 Silent p.T2796T 0.36 TCGA-BR-4280-01 4 126411350 126411350 C A FAT4 Missense_Mutation p.T4458K 0.40 benign(0.198) TCGA-BR-4280-01 4 129127627 129127627 A - LARP1B Frame_Shift_Del p.K787Nfs*26 0.39 TCGA-BR-4280-01 4 13371528 13371528 G A RAB28 Intron 0.28 TCGA-BR-4280-01 4 141313502 141313502 T - CLGN Frame_Shift_Del p.T508Pfs*12 0.14 TCGA-BR-4280-01 4 143003205 143003205 C A INPP4B Missense_Mutation p.R874L 0.36 deleterious(0.03) possibly_damaging(0.784) TCGA-BR-4280-01 4 144826695 144826695 A - GYPE 5'UTR 0.29 TCGA-BR-4280-01 4 151773180 151773180 A G LRBA Missense_Mutation p.C1228R 0.38 tolerated_low_confidence(0.36) benign(0.027) TCGA-BR-4280-01 4 152043156 152043156 A - SH3D19 3'UTR 0.40 TCGA-BR-4280-01 4 154519772 154519772 C T KIAA0922 Silent p.G718G 0.37 TCGA-BR-4280-01 4 156631766 156631766 A G GUCY1A3 Missense_Mutation p.N150S 0.30 deleterious(0.02) benign(0.001) TCGA-BR-4280-01 4 164506986 164506986 T C MARCH1 Missense_Mutation p.Q113R 0.07 tolerated(0.14) probably_damaging(0.999) TCGA-BR-4280-01 4 170613460 170613460 A - CLCN3 Frame_Shift_Del p.R311Gfs*14 0.30 TCGA-BR-4280-01 4 1720065 1720065 A G TMEM129 Missense_Mutation p.I165T 0.33 deleterious(0) benign(0.403) TCGA-BR-4280-01 4 176556153 176556155 CGG - GPM6A In_Frame_Del p.C246_R247delinsW 0.43 TCGA-BR-4280-01 4 178354444 178354444 T - AGA Frame_Shift_Del p.V289* 0.09 TCGA-BR-4280-01 4 1817414 1817414 C T LETM1 Missense_Mutation p.V683I 0.31 tolerated(1) benign(0.005) TCGA-BR-4280-01 4 189013038 189013038 A C TRIML2 Missense_Mutation p.L218R 0.32 tolerated(0.18) possibly_damaging(0.712) TCGA-BR-4280-01 4 23814436 23814436 G C PPARGC1A Silent p.R651R 0.37 TCGA-BR-4280-01 4 2701621 2701621 T C FAM193A Missense_Mutation p.M950T 0.07 tolerated(0.24) possibly_damaging(0.884) TCGA-BR-4280-01 4 3158802 3158802 C A HTT Missense_Mutation p.S1210Y 0.31 possibly_damaging(0.492) TCGA-BR-4280-01 4 36115863 36115863 G A ARAP2 Missense_Mutation p.A1362V 0.32 tolerated(0.32) possibly_damaging(0.757) TCGA-BR-4280-01 4 419744 419744 G A ABCA11P RNA 0.40 TCGA-BR-4280-01 4 47559698 47559698 G - ATP10D Frame_Shift_Del p.L617Cfs*41 0.31 TCGA-BR-4280-01 4 47746539 47746539 G T CORIN Missense_Mutation p.L227M 0.43 deleterious(0) probably_damaging(0.999) TCGA-BR-4280-01 4 57181919 57181919 C T KIAA1211 Silent p.L751L 0.38 TCGA-BR-4280-01 4 57181941 57181941 C - KIAA1211 Frame_Shift_Del p.Q760Sfs*69 0.35 TCGA-BR-4280-01 4 68925166 68925166 G A TMPRSS11F Missense_Mutation p.R346W 0.48 deleterious(0.01) probably_damaging(0.997) TCGA-BR-4280-01 4 7056720 7056720 T C TADA2B Missense_Mutation p.L401P 0.38 tolerated(0.14) possibly_damaging(0.592) TCGA-BR-4280-01 4 72649747 72649747 A C GC Missense_Mutation p.S16A 0.36 tolerated_low_confidence(0.65) benign(0) TCGA-BR-4280-01 4 74364932 74364932 T C AFM Missense_Mutation p.L464P 0.27 deleterious(0) probably_damaging(0.984) TCGA-BR-4280-01 4 75246852 75246852 C T EREG Silent p.C92C 0.39 TCGA-BR-4280-01 4 76871774 76871774 A G SDAD1 3'UTR 0.38 TCGA-BR-4280-01 4 84374977 84374977 G A HELQ Missense_Mutation p.A140V 0.35 tolerated_low_confidence(0.33) benign(0.003) TCGA-BR-4280-01 4 85716121 85716121 A - WDFY3 Frame_Shift_Del p.L1060Cfs*41 0.31 TCGA-BR-4280-01 4 88584031 88584031 C - DMP1 Frame_Shift_Del p.D369Tfs*7 0.30 TCGA-BR-4280-01 4 94750382 94750382 G - ATOH1 Frame_Shift_Del p.E104Sfs*3 0.33 TCGA-BR-4280-01 5 102537309 102537309 A - PPIP5K2 Frame_Shift_Del p.N1217Tfs*35 0.43 TCGA-BR-4280-01 5 11346569 11346569 G A CTNND2 Missense_Mutation p.P515S 0.29 tolerated(0.19) benign(0.028) TCGA-BR-4280-01 5 132197386 132197386 T C GDF9 Silent p.V420V 0.38 TCGA-BR-4280-01 5 132234075 132234075 T C AFF4 Silent p.E412E 0.48 TCGA-BR-4280-01 5 13701426 13701426 A - DNAH5 Frame_Shift_Del p.F4486Lfs*7 0.30 TCGA-BR-4280-01 5 137518981 137518981 C T KIF20A Missense_Mutation p.P319L 0.29 tolerated(0.14) benign(0.002) TCGA-BR-4280-01 5 13766090 13766090 A C DNAH5 Missense_Mutation p.L3366V 0.05 benign(0.003) TCGA-BR-4280-01 5 138749688 138749688 T A DNAJC18 3'UTR 0.62 TCGA-BR-4280-01 5 140181171 140181171 C T PCDHA3 Missense_Mutation p.A130V 0.30 deleterious_low_confidence(0) benign(0.09) TCGA-BR-4280-01 5 140559946 140559946 C T PCDHB8 Silent p.G777G 0.29 TCGA-BR-4280-01 5 140581381 140581381 G A PCDHB11 Silent p.P678P 0.38 TCGA-BR-4280-01 5 140719048 140719048 C T PCDHGA2 Silent p.Y170Y 0.41 TCGA-BR-4280-01 5 145969652 145969652 C - PPP2R2B Frame_Shift_Del p.G400Afs*31 0.22 TCGA-BR-4280-01 5 149212845 149212845 C T PPARGC1B Silent p.T403T 0.22 TCGA-BR-4280-01 5 149769545 149769545 C T TCOF1 Missense_Mutation p.R1048W 0.27 deleterious(0) possibly_damaging(0.53) TCGA-BR-4280-01 5 150071197 150071197 G A RBM22 3'UTR 0.38 TCGA-BR-4280-01 5 150095168 150095168 G A DCTN4 Silent p.Y383Y 0.31 TCGA-BR-4280-01 5 150917385 150917385 C A FAT2 Silent p.G3054G 0.37 TCGA-BR-4280-01 5 153760082 153760082 G A GALNT10 Missense_Mutation p.E277K 0.36 tolerated(0.08) benign(0.02) TCGA-BR-4280-01 5 154395578 154395580 AAC - KIF4B In_Frame_Del p.Q721del 0.38 TCGA-BR-4280-01 5 169015404 169015404 A - SPDL1 5'UTR 0.35 TCGA-BR-4280-01 5 169031164 169031164 T C SPDL1 Missense_Mutation p.Y591H 0.44 tolerated(0.41) benign(0.334) TCGA-BR-4280-01 5 173316671 173316671 A - CPEB4 5'UTR 0.45 TCGA-BR-4280-01 5 174869692 174869692 G - DRD1 Frame_Shift_Del p.K138Rfs*6 0.26 TCGA-BR-4280-01 5 177419842 177419842 G A PROP1 Silent p.G183G 0.59 TCGA-BR-4280-01 5 177633781 177633781 A - HNRNPAB Frame_Shift_Del p.K144Rfs*5 0.31 TCGA-BR-4280-01 5 179036402 179036404 TCT - RUFY1 In_Frame_Del p.F671del 0.47 TCGA-BR-4280-01 5 179250912 179250912 G A SQSTM1 Missense_Mutation p.R119H 0.32 tolerated(0.59) benign(0.002) TCGA-BR-4280-01 5 180046728 180046728 C T FLT4 Missense_Mutation p.A862T 0.44 deleterious(0) probably_damaging(0.986) TCGA-BR-4280-01 5 21802491 21802491 T G CDH12 Missense_Mutation p.K347N 0.09 tolerated(0.13) possibly_damaging(0.651) TCGA-BR-4280-01 5 24509890 24509890 T C CDH10 Silent p.K347K 0.27 TCGA-BR-4280-01 5 32074648 32074648 A G PDZD2 Missense_Mutation p.T1146A 0.26 tolerated(0.36) benign(0.012) TCGA-BR-4280-01 5 32098700 32098700 T C PDZD2 Silent p.G2726G 0.40 TCGA-BR-4280-01 5 35641550 35641550 T G SPEF2 Missense_Mutation p.L60R 0.15 deleterious(0.01) benign(0.192) TCGA-BR-4280-01 5 35793420 35793420 A G SPEF2 Missense_Mutation p.I1572V 0.09 tolerated(1) benign(0.002) TCGA-BR-4280-01 5 37299658 37299658 A T NUP155 Missense_Mutation p.F1192I 0.43 deleterious(0) probably_damaging(0.968) TCGA-BR-4280-01 5 45396642 45396642 G A HCN1 Silent p.T394T 0.42 TCGA-BR-4280-01 5 5303392 5303392 G T ADAMTS16 Missense_Mutation p.G934V 0.33 deleterious(0) probably_damaging(0.976) TCGA-BR-4280-01 5 54674186 54674186 A G SKIV2L2 Missense_Mutation p.N619D 0.38 tolerated(1) benign(0.004) TCGA-BR-4280-01 5 56181765 56181765 C T MAP3K1 Missense_Mutation p.S1330L 0.26 deleterious(0) probably_damaging(0.934) TCGA-BR-4280-01 5 63871704 63871704 C T RGS7BP Silent p.L146L 0.23 TCGA-BR-4280-01 5 65105422 65105422 G A NLN Silent p.V536V 0.42 TCGA-BR-4280-01 5 65105492 65105492 C A NLN Missense_Mutation p.L560I 0.39 tolerated(0.31) benign(0.091) TCGA-BR-4280-01 5 77004142 77004142 T - TBCA Frame_Shift_Del p.E29Rfs*12 0.23 TCGA-BR-4280-01 5 79837571 79837571 A - FAM151B Frame_Shift_Del p.K252Nfs*48 0.33 TCGA-BR-4280-01 5 82816658 82816658 A G VCAN Missense_Mutation p.S845G 0.05 tolerated(0.48) benign(0.012) TCGA-BR-4280-01 5 89923350 89923350 T - GPR98 Frame_Shift_Del p.P334Hfs*9 0.26 TCGA-BR-4280-01 6 109764540 109764540 C - SMPD2 Frame_Shift_Del p.L269Sfs*7 0.33 TCGA-BR-4280-01 6 119670101 119670101 G A MAN1A1 Silent p.L44L 0.45 TCGA-BR-4280-01 6 13283733 13283733 A G TBC1D7 Intron 0.27 TCGA-BR-4280-01 6 132966361 132966361 A G TAAR1 Missense_Mutation p.L261P 0.34 deleterious(0) probably_damaging(0.98) TCGA-BR-4280-01 6 139135710 139135710 T - ECT2L Frame_Shift_Del p.L52* 0.27 TCGA-BR-4280-01 6 139563701 139563701 G A TXLNB Missense_Mutation p.R673C 0.43 deleterious_low_confidence(0) benign(0.006) TCGA-BR-4280-01 6 146126435 146126435 T - FBXO30 Frame_Shift_Del p.V370* 0.31 TCGA-BR-4280-01 6 146240594 146240594 G A SHPRH Missense_Mutation p.R1348C 0.38 deleterious(0) possibly_damaging(0.772) TCGA-BR-4280-01 6 149700256 149700256 G A TAB2 Missense_Mutation p.R402Q 0.46 deleterious(0.01) probably_damaging(0.992) TCGA-BR-4280-01 6 149983013 149983013 C T LATS1 Missense_Mutation p.R1082K 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-BR-4280-01 6 163899920 163899920 A - QKI Frame_Shift_Del p.K134Rfs*14 0.31 TCGA-BR-4280-01 6 167550898 167550898 A - CCR6 3'UTR 0.40 TCGA-BR-4280-01 6 17507473 17507473 G A CAP2 Missense_Mutation p.R125Q 0.49 deleterious(0.02) probably_damaging(0.979) TCGA-BR-4280-01 6 22569743 22569743 C T HDGFL1 5'Flank 0.60 TCGA-BR-4280-01 6 25813374 25813374 T C SLC17A1 Silent p.P228P 0.11 TCGA-BR-4280-01 6 2900854 2900854 G A SERPINB9 Intron 0.39 TCGA-BR-4280-01 6 31324898 31324898 A G HLA-B Missense_Mutation p.L13P 0.69 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-BR-4280-01 6 31584639 31584639 G T AIF1 Missense_Mutation p.G136C 0.36 deleterious(0.02) benign(0.239) TCGA-BR-4280-01 6 31760167 31760167 A G VARS Splice_Site p.X262_splice 0.48 TCGA-BR-4280-01 6 31779676 31779676 T C HSPA1L Missense_Mutation p.H25R 0.35 deleterious_low_confidence(0.03) probably_damaging(0.992) TCGA-BR-4280-01 6 32117114 32117114 C T PRRT1 Missense_Mutation p.R269Q 0.33 deleterious(0.01) probably_damaging(0.966) TCGA-BR-4280-01 6 41001794 41001795 - C UNC5CL Frame_Shift_Ins p.A171Gfs*50 0.23 TCGA-BR-4280-01 6 41767603 41767603 T C USP49 Silent p.L545L 0.33 TCGA-BR-4280-01 6 43022057 43022057 G - MRPL2 Frame_Shift_Del p.M292* 0.47 TCGA-BR-4280-01 6 43252030 43252030 G A TTBK1 Silent p.L1184L 0.35 TCGA-BR-4280-01 6 44118039 44118039 A G TMEM63B Silent p.G533G 0.47 TCGA-BR-4280-01 6 49427150 49427151 - A MUT Frame_Shift_Ins p.L10Ffs*39 0.31 TCGA-BR-4280-01 6 52869977 52869977 G A ICK Silent p.D623D 0.46 TCGA-BR-4280-01 6 6196106 6196106 C T F13A1 Missense_Mutation p.C410Y 0.29 deleterious(0) probably_damaging(1) TCGA-BR-4280-01 6 70070837 70070837 T C BAI3 Silent p.D1224D 0.36 TCGA-BR-4280-01 6 74472143 74472143 G A CD109 Silent p.T265T 0.47 TCGA-BR-4280-01 6 75855832 75855832 T C COL12A1 Missense_Mutation p.T1516A 0.09 benign(0.001) TCGA-BR-4280-01 6 80751910 80751910 A - TTK Frame_Shift_Del p.K857Nfs*36 0.26 TCGA-BR-4280-01 6 82950021 82950021 G T IBTK Silent p.S61S 0.44 TCGA-BR-4280-01 6 84302947 84302947 T G SNAP91 Silent p.A576A 0.32 TCGA-BR-4280-01 6 84634231 84634231 A - CYB5R4 Frame_Shift_Del p.E248Rfs*12 0.36 TCGA-BR-4280-01 6 90417112 90417115 CTCT - MDN1 Frame_Shift_Del p.E2660Vfs*3 0.36 TCGA-BR-4280-01 6 99857075 99857075 G T PNISR Missense_Mutation p.P216H 0.18 deleterious(0.01) probably_damaging(0.951) TCGA-BR-4280-01 7 100200207 100200207 G A PCOLCE Intron 0.42 TCGA-BR-4280-01 7 110762919 110762919 C A LRRN3 Silent p.R31R 0.05 TCGA-BR-4280-01 7 122341965 122341966 - A RNF148 Frame_Shift_Ins p.H281Pfs*2 0.28 TCGA-BR-4280-01 7 123594028 123594028 T C SPAM1 Missense_Mutation p.M135T 0.39 deleterious(0.05) benign(0.101) TCGA-BR-4280-01 7 128415565 128415565 C T OPN1SW Missense_Mutation p.A94T 0.40 tolerated(0.82) benign(0.02) TCGA-BR-4280-01 7 128489424 128489424 C T FLNC Missense_Mutation p.T1664M 0.39 deleterious(0.02) probably_damaging(1) TCGA-BR-4280-01 7 130144785 130144785 C T MEST Missense_Mutation p.T299M 0.34 tolerated(0.15) benign(0.028) TCGA-BR-4280-01 7 138968642 138968642 C - UBN2 Frame_Shift_Del p.L999Wfs*16 0.25 TCGA-BR-4280-01 7 141673000 141673001 - A TAS2R38 Frame_Shift_Ins p.S164* 0.30 TCGA-BR-4280-01 7 143141266 143141266 G A TAS2R60 Missense_Mutation p.A241T 0.21 deleterious(0) probably_damaging(0.987) TCGA-BR-4280-01 7 146536934 146536934 C A CNTNAP2 Silent p.R114R 0.41 TCGA-BR-4280-01 7 151871239 151871239 G A KMT2C Silent p.G3117G 0.43 TCGA-BR-4280-01 7 154875885 154875885 G T HTR5A Missense_Mutation p.Q254H 0.21 tolerated(0.21) benign(0.003) TCGA-BR-4280-01 7 17873707 17873707 G T SNX13 Missense_Mutation p.P522H 0.36 deleterious(0.01) probably_damaging(0.93) TCGA-BR-4280-01 7 22184666 22184666 C T RAPGEF5 Missense_Mutation p.A575T 0.37 deleterious(0) probably_damaging(0.995) TCGA-BR-4280-01 7 30066217 30066217 G T FKBP14 5'UTR 0.47 TCGA-BR-4280-01 7 30395357 30395357 T C ZNRF2 Silent p.S193S 0.15 TCGA-BR-4280-01 7 44044671 44044671 T C SPDYE1 Intron 0.27 TCGA-BR-4280-01 7 44555476 44555476 C T NPC1L1 Missense_Mutation p.R1268H 0.30 deleterious(0.03) possibly_damaging(0.665) TCGA-BR-4280-01 7 44806214 44806214 G C ZMIZ2 Silent p.G869G 0.62 TCGA-BR-4280-01 7 45798706 45798706 G - SEPT7P2 RNA 0.30 TCGA-BR-4280-01 7 47467961 47467961 C T TNS3 Missense_Mutation p.R113H 0.35 deleterious(0) probably_damaging(0.999) TCGA-BR-4280-01 7 47851451 47851451 G A PKD1L1 Silent p.S2515S 0.48 TCGA-BR-4280-01 7 4794168 4794168 C T FOXK1 Silent p.D275D 0.43 TCGA-BR-4280-01 7 4815268 4815268 A G AP5Z1 5'UTR 0.45 TCGA-BR-4280-01 7 66785165 66785166 - A STAG3L4 RNA 0.20 TCGA-BR-4280-01 7 76828797 76828797 T C FGL2 Missense_Mutation p.D105G 0.45 tolerated(0.12) benign(0.008) TCGA-BR-4280-01 7 82544043 82544043 A C PCLO Missense_Mutation p.F4420C 0.32 unknown(0) TCGA-BR-4280-01 7 82580251 82580251 C T PCLO Missense_Mutation p.R3218H 0.37 unknown(0) TCGA-BR-4280-01 7 87032472 87032472 A C ABCB4 Silent p.A1211A 0.35 TCGA-BR-4280-01 7 89856641 89856641 T C STEAP2 Silent p.Y283Y 0.39 TCGA-BR-4280-01 7 91712572 91712572 T C AKAP9 Missense_Mutation p.L2750S 0.50 benign(0.014) TCGA-BR-4280-01 7 94056940 94056940 G A COL1A2 Missense_Mutation p.G1090D 0.41 unknown(0) TCGA-BR-4280-01 7 96339088 96339088 C T SHFM1 5'UTR 0.40 TCGA-BR-4280-01 7 96639211 96639211 C T DLX6 Missense_Mutation p.S245L 0.42 deleterious(0.02) benign(0.127) TCGA-BR-4280-01 7 98567799 98567799 C T TRRAP Missense_Mutation p.P2519L 0.38 probably_damaging(0.955) TCGA-BR-4280-01 7 99054191 99054191 A G CPSF4 3'UTR 0.27 TCGA-BR-4280-01 8 10480562 10480562 G A RP1L1 Silent p.R50R 0.29 TCGA-BR-4280-01 8 113318350 113318350 G A CSMD3 Nonsense_Mutation p.R2653* 0.37 TCGA-BR-4280-01 8 118831966 118831966 C A EXT1 Missense_Mutation p.Q495H 0.09 deleterious(0.02) probably_damaging(0.933) TCGA-BR-4280-01 8 120430440 120430440 T C NOV Silent p.P151P 0.14 TCGA-BR-4280-01 8 12291614 12291614 C T FAM86B2 Missense_Mutation p.A36T 0.17 tolerated(0.18) probably_damaging(0.995) TCGA-BR-4280-01 8 139649029 139649029 C T COL22A1 Missense_Mutation p.G1171R 0.04 unknown(0) TCGA-BR-4280-01 8 141321405 141321405 C T TRAPPC9 Missense_Mutation p.A620T 0.37 tolerated(0.62) benign(0.001) TCGA-BR-4280-01 8 143427155 143427155 C A TSNARE1 Missense_Mutation p.G63C 0.21 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BR-4280-01 8 143558823 143558823 C T BAI1 Missense_Mutation p.R434C 0.22 deleterious(0) possibly_damaging(0.898) TCGA-BR-4280-01 8 144652165 144652165 C T MROH6 Missense_Mutation p.A372T 0.33 tolerated(0.32) benign(0.009) TCGA-BR-4280-01 8 144919329 144919329 A G NRBP2 Missense_Mutation p.L382P 0.52 deleterious(0.01) probably_damaging(0.986) TCGA-BR-4280-01 8 48848299 48848299 A G PRKDC Silent p.S480S 0.05 TCGA-BR-4280-01 8 49637259 49637259 C T EFCAB1 3'UTR 0.42 TCGA-BR-4280-01 8 56015465 56015465 C T XKR4 Silent p.R139R 0.33 TCGA-BR-4280-01 8 57025892 57025893 - T MOS Frame_Shift_Ins p.I217Nfs*2 0.23 TCGA-BR-4280-01 8 67577294 67577294 A C VCPIP1 Missense_Mutation p.F634V 0.38 deleterious(0) probably_damaging(0.972) TCGA-BR-4280-01 8 68111330 68111330 T C ARFGEF1 Missense_Mutation p.K1797E 0.41 tolerated(0.51) benign(0.284) TCGA-BR-4280-01 8 69434189 69434189 C T C8orf34 Silent p.G307G 0.43 TCGA-BR-4280-01 8 72123448 72123448 T C EYA1 Silent p.R547R 0.12 TCGA-BR-4280-01 8 81733851 81733851 C T ZNF704 Splice_Site 0.37 TCGA-BR-4280-01 8 85774590 85774590 G A RALYL Missense_Mutation p.R171H 0.48 tolerated(0.08) benign(0.414) TCGA-BR-4280-01 8 95531563 95531563 A - KIAA1429 Frame_Shift_Del p.F721Lfs*11 0.34 TCGA-BR-4280-01 8 9609294 9609294 C T TNKS Missense_Mutation p.A1003V 0.34 tolerated_low_confidence(0.21) benign(0.058) TCGA-BR-4280-01 9 100849622 100849622 G T TRIM14 3'UTR 0.25 TCGA-BR-4280-01 9 103066107 103066108 - C TEX10 Frame_Shift_Ins p.V828Gfs*28 0.38 TCGA-BR-4280-01 9 106885501 106885501 A - SMC2 Frame_Shift_Del p.T751Pfs*9 0.26 TCGA-BR-4280-01 9 107379859 107379859 C T OR13C9 Missense_Mutation p.M209I 0.37 tolerated(1) benign(0.047) TCGA-BR-4280-01 9 107623886 107623886 A G ABCA1 Intron 0.39 TCGA-BR-4280-01 9 108118459 108118459 T - SLC44A1 Intron 0.41 TCGA-BR-4280-01 9 113530131 113530131 G A MUSK Missense_Mutation p.A318T 0.37 tolerated(0.08) benign(0.004) TCGA-BR-4280-01 9 114905868 114905868 G A SUSD1 Missense_Mutation p.H137Y 0.37 tolerated(0.44) benign(0.01) TCGA-BR-4280-01 9 116353631 116353631 G A RGS3 Missense_Mutation p.V1012I 0.13 tolerated(0.17) benign(0.107) TCGA-BR-4280-01 9 117122197 117122197 A T AKNA Missense_Mutation p.V757D 0.44 tolerated(1) benign(0) TCGA-BR-4280-01 9 117379548 117379548 C A C9orf91 Missense_Mutation p.L25M 0.39 deleterious_low_confidence(0.03) probably_damaging(0.921) TCGA-BR-4280-01 9 119461306 119461306 C A TRIM32 Missense_Mutation p.L429I 0.38 deleterious(0.02) probably_damaging(0.991) TCGA-BR-4280-01 9 125551855 125551855 T C OR5C1 Missense_Mutation p.V215A 0.24 deleterious(0.03) benign(0.341) TCGA-BR-4280-01 9 129455844 129455844 C T LMX1B Silent p.R261R 0.29 TCGA-BR-4280-01 9 129981171 129981171 G - RALGPS1 3'UTR 0.22 TCGA-BR-4280-01 9 130980885 130980885 A G DNM1 Missense_Mutation p.K87R 0.35 tolerated(0.09) benign(0.282) TCGA-BR-4280-01 9 131570101 131570101 C A TBC1D13 Silent p.P382P 0.37 TCGA-BR-4280-01 9 131588302 131588302 T - C9orf114 Frame_Shift_Del p.K213Rfs*3 0.42 TCGA-BR-4280-01 9 132397784 132397785 - G NTMT1 3'UTR 0.22 TCGA-BR-4280-01 9 133901811 133901811 C T LAMC3 Silent p.Y171Y 0.54 TCGA-BR-4280-01 9 135917576 135917576 C A GTF3C5 Missense_Mutation p.L86I 0.07 deleterious(0.04) possibly_damaging(0.508) TCGA-BR-4280-01 9 137328407 137328407 C T RXRA Missense_Mutation p.P446S 0.31 tolerated(0.08) probably_damaging(0.989) TCGA-BR-4280-01 9 138703390 138703390 G A CAMSAP1 Missense_Mutation p.A1525V 0.26 deleterious(0) probably_damaging(0.962) TCGA-BR-4280-01 9 139409854 139409854 T C NOTCH1 Splice_Site p.X635_splice 0.24 TCGA-BR-4280-01 9 139739752 139739752 G A C9orf172 Missense_Mutation p.A296T 0.32 tolerated(0.6) benign(0.004) TCGA-BR-4280-01 9 140137961 140137963 GAG - TUBB4B In_Frame_Del p.E433del 0.28 TCGA-BR-4280-01 9 16435990 16435990 G A BNC2 Silent p.G734G 0.44 TCGA-BR-4280-01 9 17226276 17226276 A C CNTLN Missense_Mutation p.E175D 0.32 tolerated(0.12) possibly_damaging(0.547) TCGA-BR-4280-01 9 19063047 19063047 T - HAUS6 Frame_Shift_Del p.S530Vfs*12 0.27 TCGA-BR-4280-01 9 19372238 19372238 T - DENND4C 3'UTR 0.54 TCGA-BR-4280-01 9 19424786 19424786 T G ACER2 Silent p.A104A 0.44 TCGA-BR-4280-01 9 19516258 19516258 G A SLC24A2 Nonsense_Mutation p.R627* 0.42 TCGA-BR-4280-01 9 21187179 21187179 C T IFNA4 Missense_Mutation p.D118N 0.17 tolerated(0.08) benign(0.175) TCGA-BR-4280-01 9 26984556 26984556 T C IFT74 Missense_Mutation p.M155T 0.26 tolerated(0.35) benign(0.018) TCGA-BR-4280-01 9 27566788 27566788 C T C9orf72 Missense_Mutation p.G111R 0.38 deleterious(0.01) possibly_damaging(0.715) TCGA-BR-4280-01 9 32635575 32635575 C T TAF1L Translation_Start_Site p.M1? 0.38 deleterious_low_confidence(0) possibly_damaging(0.746) TCGA-BR-4280-01 9 33797910 33797910 G A PRSS3 Missense_Mutation p.R152H 0.40 tolerated(0.13) benign(0.265) TCGA-BR-4280-01 9 35091339 35091339 G A PIGO Silent p.L849L 0.40 TCGA-BR-4280-01 9 35558504 35558504 A G RUSC2 Missense_Mutation p.Q1094R 0.32 tolerated(0.13) probably_damaging(0.994) TCGA-BR-4280-01 9 35869672 35869672 C T OR13J1 Missense_Mutation p.A243T 0.32 deleterious(0.01) possibly_damaging(0.825) TCGA-BR-4280-01 9 39073899 39073899 T - CNTNAP3 Frame_Shift_Del p.E1286Kfs*27 0.13 TCGA-BR-4280-01 9 5801292 5801292 T - ERMP1 Frame_Shift_Del p.T651Pfs*3 0.29 TCGA-BR-4280-01 9 6013657 6013657 A C RANBP6 Missense_Mutation p.L651V 0.05 deleterious(0.05) benign(0.443) TCGA-BR-4280-01 9 74360369 74360369 G A TMEM2 Missense_Mutation p.A200V 0.37 tolerated(0.34) benign(0.117) TCGA-BR-4280-01 9 79955199 79955199 G - VPS13A Splice_Site p.X2293_splice 0.27 TCGA-BR-4280-01 9 80336240 80336240 T C GNAQ Silent p.%3D 0.52 TCGA-BR-4280-01 9 84225192 84225192 G - TLE1 Frame_Shift_Del p.P425Lfs*3 0.27 TCGA-BR-4280-01 9 84530473 84530473 T C SPATA31D5P RNA 0.43 TCGA-BR-4280-01 9 8484205 8484205 A G PTPRD Silent p.R1109R 0.08 TCGA-BR-4280-01 9 95609713 95609713 T - ZNF484 Frame_Shift_Del p.K454Nfs*116 0.30 TCGA-BR-4280-01 9 96428055 96428055 T C PHF2 Silent p.D675D 0.15 TCGA-BR-4280-01 9 96860859 96860859 C T PTPDC1 Nonsense_Mutation p.Q669* 0.40 TCGA-BR-4280-01 X 100511132 100511132 C G DRP2 Missense_Mutation p.H758D 0.40 deleterious(0) possibly_damaging(0.855) TCGA-BR-4280-01 X 10094344 10094344 C T WWC3 Silent p.L702L 0.36 TCGA-BR-4280-01 X 10106971 10106971 C T WWC3 Missense_Mutation p.R1027W 0.58 deleterious(0) probably_damaging(0.983) TCGA-BR-4280-01 X 101826168 101826168 A G NXF4 RNA 0.48 TCGA-BR-4280-01 X 102004719 102004719 C T BHLHB9 Missense_Mutation p.R266C 0.39 tolerated(0.05) benign(0.025) TCGA-BR-4280-01 X 102632284 102632284 A - NGFRAP1 Intron 0.52 TCGA-BR-4280-01 X 103219168 103219169 - A TMSB15B Frame_Shift_Ins p.N27Kfs*50 0.33 TCGA-BR-4280-01 X 108718959 108718959 C A GUCY2F Missense_Mutation p.K69N 0.15 deleterious(0.02) probably_damaging(0.991) TCGA-BR-4280-01 X 111155719 111155719 C G TRPC5 Missense_Mutation p.E234Q 0.35 deleterious(0) probably_damaging(1) TCGA-BR-4280-01 X 117054219 117054219 A G KLHL13 Missense_Mutation p.F122L 0.04 tolerated(0.08) possibly_damaging(0.664) TCGA-BR-4280-01 X 119669715 119669715 T C CUL4B Silent p.G728G 0.43 TCGA-BR-4280-01 X 120009203 120009203 A T CT47B1 Missense_Mutation p.L108M 0.33 tolerated(0.46) benign(0.163) TCGA-BR-4280-01 X 123517645 123517645 T C TENM1 Missense_Mutation p.H2379R 0.28 deleterious(0.04) probably_damaging(0.945) TCGA-BR-4280-01 X 123526074 123526074 C A TENM1 Missense_Mutation p.W1839L 0.13 deleterious(0) possibly_damaging(0.572) TCGA-BR-4280-01 X 129055391 129055391 C G UTP14A Missense_Mutation p.D392E 0.34 tolerated(0.28) possibly_damaging(0.626) TCGA-BR-4280-01 X 130410940 130410940 T C IGSF1 Missense_Mutation p.S866G 0.36 deleterious(0) probably_damaging(0.995) TCGA-BR-4280-01 X 131216453 131216453 C T FRMD7 Silent p.S281S 0.35 TCGA-BR-4280-01 X 133378875 133378875 T - CCDC160 Frame_Shift_Del p.F17Lfs*7 0.59 TCGA-BR-4280-01 X 135405357 135405357 T C GPR112 Missense_Mutation p.L164P 0.09 tolerated(0.36) benign(0.005) TCGA-BR-4280-01 X 13787350 13787350 T - OFD1 3'UTR 0.33 TCGA-BR-4280-01 X 140995628 140995628 C A MAGEC1 Missense_Mutation p.P813H 0.38 deleterious_low_confidence(0) unknown(0) TCGA-BR-4280-01 X 150869254 150869254 C T PRRG3 Nonsense_Mutation p.R149* 0.33 TCGA-BR-4280-01 X 150912578 150912578 C T CNGA2 Nonsense_Mutation p.R535* 0.36 TCGA-BR-4280-01 X 152483166 152483166 T C MAGEA1 5'UTR 0.44 TCGA-BR-4280-01 X 152814984 152814984 C T ATP2B3 Silent p.R456R 0.33 TCGA-BR-4280-01 X 152915040 152915040 T G DUSP9 Missense_Mutation p.F243V 0.15 tolerated(0.2) benign(0) TCGA-BR-4280-01 X 15307687 15307687 A G ASB11 Silent p.T198T 0.05 TCGA-BR-4280-01 X 153219666 153219666 G A HCFC1 Missense_Mutation p.A1395V 0.50 tolerated_low_confidence(0.15) benign(0.001) TCGA-BR-4280-01 X 153609454 153609454 G A EMD Missense_Mutation p.R221H 0.36 deleterious(0) benign(0.003) TCGA-BR-4280-01 X 154133263 154133263 G - F8 Frame_Shift_Del p.F1804Sfs*67 0.11 TCGA-BR-4280-01 X 19626152 19626152 G A SH3KBP1 Silent p.D303D 0.51 TCGA-BR-4280-01 X 21875159 21875159 C T YY2 Missense_Mutation p.T186I 0.44 deleterious(0.04) benign(0.285) TCGA-BR-4280-01 X 24229511 24229511 G A ZFX 3'UTR 0.34 TCGA-BR-4280-01 X 24742543 24742543 A G POLA1 Missense_Mutation p.Y425C 0.08 deleterious(0.01) benign(0.098) TCGA-BR-4280-01 X 24830852 24830853 - A POLA1 Frame_Shift_Ins p.K1054Efs*8 0.36 TCGA-BR-4280-01 X 2878425 2878425 T C ARSE Missense_Mutation p.H6R 0.22 tolerated_low_confidence(0.3) benign(0) TCGA-BR-4280-01 X 33229458 33229458 A - DMD 5'UTR 0.25 TCGA-BR-4280-01 X 35938122 35938122 G A CXorf22 Missense_Mutation p.R69H 0.56 tolerated(0.09) benign(0.07) TCGA-BR-4280-01 X 37553709 37553709 C T XK Missense_Mutation p.A139V 0.31 tolerated(0.24) benign(0.393) TCGA-BR-4280-01 X 44703932 44703932 G A DUSP21 Missense_Mutation p.R185H 0.35 tolerated(0.09) benign(0.001) TCGA-BR-4280-01 X 46508175 46508175 A C SLC9A7 Missense_Mutation p.L469V 0.44 deleterious(0) benign(0.056) TCGA-BR-4280-01 X 47308161 47308161 A G ZNF41 Silent p.F336F 0.32 TCGA-BR-4280-01 X 48458724 48458724 G A WDR13 Missense_Mutation p.A181T 0.54 deleterious(0) probably_damaging(0.997) TCGA-BR-4280-01 X 49957256 49957256 G A AKAP4 Missense_Mutation p.S703F 0.36 deleterious(0) probably_damaging(1) TCGA-BR-4280-01 X 49958092 49958092 C A AKAP4 Missense_Mutation p.E424D 0.37 tolerated(0.29) probably_damaging(0.999) TCGA-BR-4280-01 X 52893814 52893814 C T XAGE3 Missense_Mutation p.M101I 0.52 tolerated(0.18) probably_damaging(0.977) TCGA-BR-4280-01 X 54559016 54559016 A G GNL3L Missense_Mutation p.H6R 0.40 tolerated_low_confidence(0.07) benign(0.001) TCGA-BR-4280-01 X 63411827 63411827 C A AMER1 Missense_Mutation p.G447V 0.37 tolerated(0.07) benign(0.053) TCGA-BR-4280-01 X 70320655 70320655 G A FOXO4 Missense_Mutation p.R192H 0.47 deleterious(0) probably_damaging(0.979) TCGA-BR-4280-01 X 70824105 70824105 T A ACRC Missense_Mutation p.D326E 0.40 unknown(0) TCGA-BR-4280-01 X 70824111 70824111 T G ACRC Missense_Mutation p.N328K 0.38 unknown(0) TCGA-BR-4280-01 X 73062930 73062930 C T XIST RNA 0.44 TCGA-BR-4280-01 X 73071272 73071272 G T XIST RNA 0.38 TCGA-BR-4280-01 X 73959959 73959959 C A KIAA2022 Missense_Mutation p.G1478V 0.29 tolerated(0.31) benign(0.079) TCGA-BR-4280-01 X 78216820 78216820 T C P2RY10 Missense_Mutation p.M268T 0.05 deleterious(0) benign(0.063) TCGA-BR-4280-01 X 82764202 82764202 G T POU3F4 Missense_Mutation p.K290N 0.44 deleterious(0) probably_damaging(0.997) TCGA-BR-4280-01 X 8555928 8555928 A C KAL1 Silent p.S211S 0.25 TCGA-BR-4280-01 X 8555953 8555953 T G KAL1 Missense_Mutation p.K203T 0.18 tolerated(0.32) possibly_damaging(0.892) TCGA-BR-4280-01 X 85950100 85950100 T G DACH2 Silent p.A283A 0.34 TCGA-BR-4280-01 X 89177518 89177518 A C TGIF2LX Missense_Mutation p.K145T 0.51 tolerated(0.12) benign(0.063) TCGA-BR-4280-01 X 91090475 91090475 T C PCDH11X 5'UTR 0.45 TCGA-BR-4280-01 X 96502819 96502819 A C DIAPH2 Missense_Mutation p.K942T 0.07 deleterious(0.01) probably_damaging(0.987) TCGA-BR-4280-01 X 9907303 9907303 C - SHROOM2 Frame_Shift_Del p.K1405Rfs*5 0.29 TCGA-BR-4292-01 10 101090324 101090324 C T CNNM1 Missense_Mutation p.R394W 0.31 deleterious(0) probably_damaging(1) TCGA-BR-4292-01 10 102987489 102987489 C T LBX1 Silent p.S128S 0.25 TCGA-BR-4292-01 10 103340084 103340084 G A POLL Silent p.V428V 0.27 TCGA-BR-4292-01 10 103871226 103871226 G - LDB1 Frame_Shift_Del p.F32Sfs*73 0.34 TCGA-BR-4292-01 10 104679333 104679333 C T CNNM2 Missense_Mutation p.R366W 0.34 deleterious(0) probably_damaging(1) TCGA-BR-4292-01 10 105361883 105361883 C T SH3PXD2A Missense_Mutation p.R1003H 0.37 deleterious(0.01) possibly_damaging(0.708) TCGA-BR-4292-01 10 105363000 105363001 - G SH3PXD2A Frame_Shift_Ins p.K631Qfs*83 0.28 TCGA-BR-4292-01 10 105824282 105824282 G A COL17A1 Missense_Mutation p.A227V 0.32 unknown(0) TCGA-BR-4292-01 10 1087270 1087271 - T IDI1 Frame_Shift_Ins p.E238Rfs*10 0.19 TCGA-BR-4292-01 10 117045787 117045787 T A ATRNL1 Missense_Mutation p.S765R 0.08 tolerated(0.14) probably_damaging(0.919) TCGA-BR-4292-01 10 118897444 118897444 C T VAX1 Missense_Mutation p.A42T 0.41 tolerated(0.23) unknown(0) TCGA-BR-4292-01 10 11990443 11990443 T A UPF2 Missense_Mutation p.E1033D 0.67 tolerated(0.62) benign(0.001) TCGA-BR-4292-01 10 120936633 120936634 - C PRDX3 Frame_Shift_Ins p.I24Hfs*50 0.27 TCGA-BR-4292-01 10 121557041 121557041 T G INPP5F Missense_Mutation p.L313V 0.31 tolerated(0.23) benign(0.2) TCGA-BR-4292-01 10 12207060 12207060 T C SEC61A2 3'Flank 0.53 TCGA-BR-4292-01 10 123325038 123325038 G A FGFR2 Missense_Mutation p.A97V 0.23 tolerated(1) benign(0.423) TCGA-BR-4292-01 10 124896865 124896865 G A HMX3 Missense_Mutation p.R231H 0.33 deleterious(0) probably_damaging(1) TCGA-BR-4292-01 10 126727703 126727703 G A CTBP2 5'UTR 0.33 TCGA-BR-4292-01 10 128836060 128836060 G A DOCK1 Missense_Mutation p.D643N 0.30 deleterious(0) benign(0.003) TCGA-BR-4292-01 10 128974539 128974539 G A FAM196A Missense_Mutation p.R41W 0.37 deleterious(0) probably_damaging(1) TCGA-BR-4292-01 10 128974569 128974569 C T FAM196A Missense_Mutation p.A31T 0.27 tolerated(0.07) benign(0.209) TCGA-BR-4292-01 10 134598438 134598438 G A NKX6-2 Silent p.G272G 0.27 TCGA-BR-4292-01 10 134664801 134664801 G A TTC40 Silent p.N1861N 0.29 TCGA-BR-4292-01 10 16893340 16893340 A G CUBN Missense_Mutation p.V3186A 0.13 tolerated(0.21) benign(0.042) TCGA-BR-4292-01 10 17147455 17147455 C T CUBN Splice_Site p.X410_splice 0.30 TCGA-BR-4292-01 10 17278320 17278320 T C VIM Missense_Mutation p.V434A 0.34 tolerated(0.8) benign(0.002) TCGA-BR-4292-01 10 18242199 18242199 C T SLC39A12 5'UTR 0.27 TCGA-BR-4292-01 10 18828598 18828599 - A CACNB2 Frame_Shift_Ins p.R646Tfs*3 0.23 TCGA-BR-4292-01 10 22830828 22830828 G - PIP4K2A Frame_Shift_Del p.P314Qfs*8 0.29 TCGA-BR-4292-01 10 25887748 25887748 C T GPR158 Missense_Mutation p.R1065C 0.31 deleterious(0.01) benign(0.001) TCGA-BR-4292-01 10 26462760 26462760 A - MYO3A Frame_Shift_Del p.M1192* 0.33 TCGA-BR-4292-01 10 27295869 27295869 T - ANKRD26 Frame_Shift_Del p.N1659Ifs*2 0.25 TCGA-BR-4292-01 10 27459254 27459254 A - MASTL Frame_Shift_Del p.I458Lfs*9 0.29 TCGA-BR-4292-01 10 29839766 29839766 G A SVIL Missense_Mutation p.P196L 0.32 tolerated(0.1) benign(0.003) TCGA-BR-4292-01 10 3155672 3155672 G A PFKP Missense_Mutation p.A445T 0.62 tolerated(0.08) possibly_damaging(0.529) TCGA-BR-4292-01 10 32581920 32581920 C T EPC1 Missense_Mutation p.R221Q 0.48 deleterious(0) probably_damaging(0.996) TCGA-BR-4292-01 10 35500750 35500750 T C CREM 3'UTR 0.25 TCGA-BR-4292-01 10 38344404 38344404 G A ZNF33A Missense_Mutation p.R451H 0.33 tolerated(0.5) benign(0.006) TCGA-BR-4292-01 10 44868765 44868765 G A CXCL12 3'Flank 0.29 TCGA-BR-4292-01 10 50819067 50819067 C T SLC18A3 Missense_Mutation p.T94M 0.33 tolerated(0.3) benign(0.025) TCGA-BR-4292-01 10 55782869 55782869 C T PCDH15 Missense_Mutation p.S770N 0.30 tolerated(0.08) benign(0.292) TCGA-BR-4292-01 10 61029761 61029761 T G FAM13C Missense_Mutation p.N234T 0.36 deleterious(0.04) probably_damaging(0.959) TCGA-BR-4292-01 10 61835974 61835974 C T ANK3 Silent p.A1555A 0.32 TCGA-BR-4292-01 10 64950825 64950828 TCTT - JMJD1C Frame_Shift_Del p.R2040Nfs*30 0.34 TCGA-BR-4292-01 10 69676036 69676036 T - SIRT1 Frame_Shift_Del p.L645Cfs*41 0.27 TCGA-BR-4292-01 10 69881820 69881822 TCT - MYPN In_Frame_Del p.S210del 0.32 TCGA-BR-4292-01 10 70450964 70450964 C T TET1 Missense_Mutation p.T1935M 0.45 tolerated(0.17) probably_damaging(0.965) TCGA-BR-4292-01 10 70856875 70856875 C T SRGN Missense_Mutation p.R39C 0.39 tolerated(0.05) benign(0.207) TCGA-BR-4292-01 10 71124621 71124621 C T HK1 Missense_Mutation p.T157M 0.23 deleterious(0) probably_damaging(0.999) TCGA-BR-4292-01 10 71142254 71142254 G A HK1 Missense_Mutation p.R430H 0.42 tolerated(0.19) possibly_damaging(0.908) TCGA-BR-4292-01 10 73491893 73491893 G A CDH23 Missense_Mutation p.A1294T 0.22 tolerated(0.06) probably_damaging(0.979) TCGA-BR-4292-01 10 73572286 73572286 G A CDH23 Missense_Mutation p.A904T 0.35 tolerated(0.06) benign(0.001) TCGA-BR-4292-01 10 74885039 74885039 C A NUDT13 Intron 0.24 TCGA-BR-4292-01 10 7608295 7608295 C T ITIH5 Missense_Mutation p.R742H 0.12 tolerated(0.27) benign(0.008) TCGA-BR-4292-01 10 7627891 7627891 A T ITIH5 Missense_Mutation p.Y361N 0.11 deleterious(0) possibly_damaging(0.662) TCGA-BR-4292-01 10 80968205 80968205 C T ZMIZ1 Missense_Mutation p.T58M 0.29 possibly_damaging(0.877) TCGA-BR-4292-01 10 8115780 8115780 A - GATA3 Frame_Shift_Del p.V379Cfs*26 0.24 TCGA-BR-4292-01 10 81680656 81680656 A - MBL1P RNA 0.33 TCGA-BR-4292-01 10 858842 858842 C T LARP4B 3'UTR 0.30 TCGA-BR-4292-01 10 85968128 85968128 G A CDHR1 Missense_Mutation p.D388N 0.34 deleterious(0) probably_damaging(1) TCGA-BR-4292-01 10 85970853 85970853 G A CDHR1 Missense_Mutation p.D473N 0.27 tolerated(0.11) benign(0.003) TCGA-BR-4292-01 10 88428474 88428474 G T LDB3 Missense_Mutation p.G9V 0.40 deleterious(0) probably_damaging(1) TCGA-BR-4292-01 10 88703011 88703011 G A MMRN2 Silent p.D510D 0.24 TCGA-BR-4292-01 10 88768422 88768422 C T RP11-96C23.10 3'Flank 0.29 TCGA-BR-4292-01 10 890939 890939 T - LARP4B Frame_Shift_Del p.T163Hfs*47 0.49 TCGA-BR-4292-01 10 90034668 90034668 A - RNLS 3'UTR 0.52 TCGA-BR-4292-01 10 90591679 90591679 C T ANKRD22 Silent p.T42T 0.34 TCGA-BR-4292-01 10 90701549 90701549 G A ACTA2 Silent p.R149R 0.27 TCGA-BR-4292-01 10 91483767 91483767 A - KIF20B Frame_Shift_Del p.K592Rfs*4 0.28 TCGA-BR-4292-01 10 91483813 91483813 T C KIF20B Silent p.V605V 0.32 TCGA-BR-4292-01 10 92982626 92982626 C T PCGF5 5'UTR 0.26 TCGA-BR-4292-01 10 93744029 93744029 C T BTAF1 Silent p.D765D 0.22 TCGA-BR-4292-01 10 95069835 95069835 C T MYOF Missense_Mutation p.G2030D 0.31 tolerated(0.13) benign(0.236) TCGA-BR-4292-01 10 95157026 95157026 T - MYOF Frame_Shift_Del p.I438* 0.12 TCGA-BR-4292-01 10 95394529 95394529 C T PDE6C Silent p.D378D 0.36 TCGA-BR-4292-01 10 97096789 97096789 C T SORBS1 Missense_Mutation p.R1043H 0.29 tolerated_low_confidence(0.64) benign(0) TCGA-BR-4292-01 10 97397115 97397115 G A ALDH18A1 Missense_Mutation p.R128C 0.43 deleterious(0) probably_damaging(0.999) TCGA-BR-4292-01 10 98764573 98764573 G A SLIT1 Missense_Mutation p.T1196M 0.35 deleterious(0) benign(0.438) TCGA-BR-4292-01 10 99141494 99141494 G A RRP12 Missense_Mutation p.T433I 0.33 deleterious(0.04) benign(0.001) TCGA-BR-4292-01 10 99358872 99358872 G A HOGA1 Missense_Mutation p.V123I 0.27 tolerated(0.18) benign(0.004) TCGA-BR-4292-01 10 99695979 99695979 G A CRTAC1 Silent p.D123D 0.41 TCGA-BR-4292-01 11 1017547 1017547 G A MUC6 Missense_Mutation p.H1752Y 0.09 unknown(0) TCGA-BR-4292-01 11 101834523 101834523 G A KIAA1377 Silent p.P919P 0.09 TCGA-BR-4292-01 11 103058206 103058206 G A DYNC2H1 Missense_Mutation p.R2344H 0.08 probably_damaging(0.937) TCGA-BR-4292-01 11 104916053 104916053 G T CARD16 5'Flank 0.05 TCGA-BR-4292-01 11 108098419 108098419 G A ATM Missense_Mutation p.R23Q 0.35 deleterious(0) probably_damaging(0.965) TCGA-BR-4292-01 11 108385068 108385068 A C EXPH5 Missense_Mutation p.L389R 0.30 deleterious(0.03) probably_damaging(0.914) TCGA-BR-4292-01 11 110108291 110108291 G A RDX Missense_Mutation p.R393C 0.36 tolerated(0.06) benign(0.192) TCGA-BR-4292-01 11 113195384 113195384 A - TTC12 Frame_Shift_Del p.N102Tfs*8 0.19 TCGA-BR-4292-01 11 11374576 11374576 C T CSNK2A3 Missense_Mutation p.V31M 0.34 deleterious(0) probably_damaging(0.929) TCGA-BR-4292-01 11 113803030 113803030 C T HTR3B Missense_Mutation p.P130S 0.27 deleterious(0) probably_damaging(0.974) TCGA-BR-4292-01 11 115088648 115088648 G A CADM1 Missense_Mutation p.A262V 0.26 tolerated(0.23) possibly_damaging(0.514) TCGA-BR-4292-01 11 1154250 1154250 C T MUC5AC Silent p.S32S 0.26 TCGA-BR-4292-01 11 117335741 117335741 T C DSCAML1 Missense_Mutation p.Q1121R 0.31 tolerated(0.2) benign(0.236) TCGA-BR-4292-01 11 118068766 118068768 TCT - AMICA1 In_Frame_Del p.K317del 0.40 TCGA-BR-4292-01 11 118764511 118764511 G A CXCR5 Silent p.T86T 0.34 TCGA-BR-4292-01 11 118886458 118886458 G A RPS25 3'UTR 0.44 TCGA-BR-4292-01 11 118920545 118920545 T G HYOU1 Missense_Mutation p.E557A 0.05 deleterious(0) probably_damaging(0.991) TCGA-BR-4292-01 11 118969142 118969143 - A DPAGT1 Frame_Shift_Ins p.T234Hfs*116 0.24 TCGA-BR-4292-01 11 119993703 119993703 G A TRIM29 Missense_Mutation p.P465L 0.26 deleterious(0) possibly_damaging(0.595) TCGA-BR-4292-01 11 120008291 120008291 C T TRIM29 Missense_Mutation p.R150Q 0.34 tolerated(0.07) benign(0.042) TCGA-BR-4292-01 11 122733159 122733159 T C CRTAM Intron 0.36 TCGA-BR-4292-01 11 123596771 123596771 T C ZNF202 Silent p.G627G 0.29 TCGA-BR-4292-01 11 123887208 123887208 G T OR10G4 Missense_Mutation p.Q309H 0.21 tolerated(0.08) benign(0.013) TCGA-BR-4292-01 11 123909240 123909240 C A OR10G7 Missense_Mutation p.V157F 0.28 tolerated(0.32) benign(0.098) TCGA-BR-4292-01 11 124619649 124619649 G A VSIG2 Missense_Mutation p.R181C 0.36 deleterious(0.01) possibly_damaging(0.863) TCGA-BR-4292-01 11 128680804 128680805 - G FLI1 Frame_Shift_Ins p.I430Nfs*12 0.30 TCGA-BR-4292-01 11 128840874 128840874 G A ARHGAP32 Missense_Mutation p.R1398C 0.30 deleterious_low_confidence(0.04) possibly_damaging(0.847) TCGA-BR-4292-01 11 132307147 132307147 G A OPCML Silent p.P211P 0.20 TCGA-BR-4292-01 11 17098745 17098745 C T RPS13 Missense_Mutation p.A41T 0.31 deleterious(0.01) possibly_damaging(0.733) TCGA-BR-4292-01 11 18633072 18633072 C T SPTY2D1 Missense_Mutation p.R639H 0.35 deleterious(0) probably_damaging(0.988) TCGA-BR-4292-01 11 18955510 18955510 G A MRGPRX1 Silent p.F274F 0.25 TCGA-BR-4292-01 11 2339137 2339137 C T TSPAN32 Missense_Mutation p.R316W 0.33 deleterious_low_confidence(0) benign(0.14) TCGA-BR-4292-01 11 30033563 30033563 A - KCNA4 Frame_Shift_Del p.F221Lfs*21 0.26 TCGA-BR-4292-01 11 31284572 31284572 G A DCDC1 3'UTR 0.30 TCGA-BR-4292-01 11 3140844 3140844 G A OSBPL5 Silent p.S208S 0.33 TCGA-BR-4292-01 11 32637520 32637520 T - CCDC73 Frame_Shift_Del p.E448Kfs*5 0.24 TCGA-BR-4292-01 11 32676507 32676507 T - CCDC73 Frame_Shift_Del p.A220Qfs*5 0.29 TCGA-BR-4292-01 11 33117910 33117910 T - CSTF3 Frame_Shift_Del p.K439Nfs*33 0.24 TCGA-BR-4292-01 11 35456304 35456304 C T PAMR1 Missense_Mutation p.R478H 0.28 tolerated(0.33) benign(0.029) TCGA-BR-4292-01 11 36484349 36484349 C T PRR5L 3'UTR 0.38 TCGA-BR-4292-01 11 3697469 3697469 T C NUP98 Missense_Mutation p.M1775V 0.22 deleterious(0.01) probably_damaging(0.959) TCGA-BR-4292-01 11 375665 375665 G A B4GALNT4 Missense_Mutation p.V293M 0.33 deleterious(0) probably_damaging(0.995) TCGA-BR-4292-01 11 3846303 3846305 CTT - PGAP2 In_Frame_Del p.F256del 0.39 TCGA-BR-4292-01 11 418466 418466 G A ANO9 Nonsense_Mutation p.Q752* 0.36 TCGA-BR-4292-01 11 43351532 43351532 G A API5 Missense_Mutation p.R382Q 0.22 deleterious(0) probably_damaging(0.954) TCGA-BR-4292-01 11 44102762 44102762 C A ACCS Missense_Mutation p.L335M 0.33 deleterious(0) probably_damaging(0.998) TCGA-BR-4292-01 11 44286624 44286624 G - ALX4 Frame_Shift_Del p.P339Lfs*12 0.30 TCGA-BR-4292-01 11 45671251 45671251 C T CHST1 Missense_Mutation p.R408H 0.32 tolerated(0.59) benign(0) TCGA-BR-4292-01 11 45926551 45926551 A - MAPK8IP1 Frame_Shift_Del p.N643Tfs*91 0.33 TCGA-BR-4292-01 11 45928455 45928456 - G C11orf94 Frame_Shift_Ins p.L47Pfs*13 0.29 TCGA-BR-4292-01 11 46419227 46419227 G A AMBRA1 Nonsense_Mutation p.R1134* 0.21 TCGA-BR-4292-01 11 46564257 46564257 G A AMBRA1 Missense_Mutation p.P347L 0.36 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BR-4292-01 11 46568814 46568814 T G AMBRA1 Missense_Mutation p.N76T 0.25 tolerated_low_confidence(0.22) probably_damaging(0.996) TCGA-BR-4292-01 11 47470636 47470636 C T RAPSN 5'UTR 0.27 TCGA-BR-4292-01 11 47494744 47494745 - G CELF1 Frame_Shift_Ins p.Q436Pfs*5 0.24 TCGA-BR-4292-01 11 4790804 4790804 C T OR51F1 Missense_Mutation p.G115E 0.13 deleterious(0.01) probably_damaging(0.928) TCGA-BR-4292-01 11 479107 479107 C T PTDSS2 Silent p.C130C 0.30 TCGA-BR-4292-01 11 48238681 48238681 T C OR4B1 Missense_Mutation p.V107A 0.36 tolerated(1) probably_damaging(0.997) TCGA-BR-4292-01 11 48286043 48286043 G A OR4X1 Missense_Mutation p.V211M 0.29 tolerated(0.31) possibly_damaging(0.901) TCGA-BR-4292-01 11 5020583 5020584 - T OR51L1 Frame_Shift_Ins p.V126Cfs*100 0.25 TCGA-BR-4292-01 11 5221347 5221347 C T OR51V1 Missense_Mutation p.R195H 0.30 deleterious(0.02) benign(0.073) TCGA-BR-4292-01 11 55111418 55111419 - T OR4A16 Frame_Shift_Ins p.V250Cfs*9 0.29 TCGA-BR-4292-01 11 5565960 5565960 A - OR52H1 Frame_Shift_Del p.F265Sfs*38 0.29 TCGA-BR-4292-01 11 55927379 55927379 G A OR8K5 Nonsense_Mutation p.R139* 0.23 TCGA-BR-4292-01 11 56058017 56058017 A T OR8H1 Silent p.R174R 0.12 TCGA-BR-4292-01 11 58723451 58723451 G A GLYATL1 Missense_Mutation p.C318Y 0.42 deleterious(0.01) possibly_damaging(0.861) TCGA-BR-4292-01 11 58920101 58920101 A - FAM111A Frame_Shift_Del p.N322Mfs*16 0.30 TCGA-BR-4292-01 11 59344046 59344046 C T OSBP 3'UTR 0.25 TCGA-BR-4292-01 11 59406604 59406604 T C PATL1 Silent p.P736P 0.33 TCGA-BR-4292-01 11 598418 598418 G A PHRF1 Missense_Mutation p.E314K 0.29 deleterious(0) probably_damaging(0.981) TCGA-BR-4292-01 11 60543097 60543097 A C MS4A15 Missense_Mutation p.N211T 0.32 tolerated(0.06) benign(0.146) TCGA-BR-4292-01 11 608437 608437 G A PHRF1 Missense_Mutation p.R993H 0.20 tolerated(0.07) probably_damaging(0.923) TCGA-BR-4292-01 11 61912525 61912527 GGA - INCENP In_Frame_Del p.E561del 0.34 TCGA-BR-4292-01 11 62285596 62285596 G A AHNAK Silent p.G5431G 0.26 TCGA-BR-4292-01 11 62349015 62349015 G A TUT1 Silent p.P182P 0.43 TCGA-BR-4292-01 11 6244371 6244371 A G FAM160A2 Missense_Mutation p.L292P 0.33 deleterious(0) benign(0.323) TCGA-BR-4292-01 11 62496491 62496491 G C TTC9C Silent p.P57P 0.39 TCGA-BR-4292-01 11 62649529 62649529 A - SLC3A2 Frame_Shift_Del p.K301Rfs*31 0.33 TCGA-BR-4292-01 11 64111890 64111891 - A CCDC88B Frame_Shift_Ins p.R627Kfs*11 0.30 TCGA-BR-4292-01 11 6413002 6413002 C T SMPD1 Missense_Mutation p.P236L 0.44 deleterious(0) possibly_damaging(0.601) TCGA-BR-4292-01 11 6432180 6432180 C T APBB1 Missense_Mutation p.R133Q 0.26 tolerated(0.62) benign(0.002) TCGA-BR-4292-01 11 64575082 64575083 - CA MEN1 Frame_Shift_Ins p.A247Vfs*40 0.29 TCGA-BR-4292-01 11 64813303 64813303 C T NAALADL1 Missense_Mutation p.R676H 0.30 tolerated(0.14) benign(0.022) TCGA-BR-4292-01 11 64825900 64825901 - T NAALADL1 Frame_Shift_Ins p.A32Sfs*46 0.27 TCGA-BR-4292-01 11 65146856 65146856 C - SLC25A45 Frame_Shift_Del p.F111Sfs*60 0.25 TCGA-BR-4292-01 11 65392970 65392970 C T PCNXL3 Missense_Mutation p.R1042C 0.16 deleterious(0) benign(0.16) TCGA-BR-4292-01 11 65547392 65547392 A G AP5B1 Missense_Mutation p.L191P 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-BR-4292-01 11 65810630 65810630 C T GAL3ST3 Missense_Mutation p.R215H 0.29 tolerated(0.64) benign(0.017) TCGA-BR-4292-01 11 65998373 65998373 G A PACS1 Missense_Mutation p.D530N 0.41 tolerated(0.05) possibly_damaging(0.895) TCGA-BR-4292-01 11 66039443 66039443 G A RAB1B Intron 0.21 TCGA-BR-4292-01 11 66099763 66099763 C T RIN1 Missense_Mutation p.R779Q 0.41 tolerated_low_confidence(1) benign(0.238) TCGA-BR-4292-01 11 66249741 66249741 C T DPP3 Missense_Mutation p.R24C 0.30 deleterious(0.01) benign(0) TCGA-BR-4292-01 11 66393068 66393068 C T RBM14 Missense_Mutation p.P574L 0.29 tolerated(0.05) unknown(0) TCGA-BR-4292-01 11 67051736 67051736 C T ADRBK1 Missense_Mutation p.R516W 0.36 deleterious(0) probably_damaging(1) TCGA-BR-4292-01 11 67205786 67205786 T C CORO1B 3'UTR 0.41 TCGA-BR-4292-01 11 68205952 68205952 A C LRP5 Missense_Mutation p.S1384R 0.26 tolerated(0.18) benign(0.09) TCGA-BR-4292-01 11 686948 686948 G A DEAF1 Silent p.T238T 0.10 TCGA-BR-4292-01 11 6891003 6891003 G A OR10A2 Silent p.L6L 0.09 TCGA-BR-4292-01 11 6891024 6891024 A G OR10A2 Silent p.L13L 0.12 TCGA-BR-4292-01 11 6891030 6891030 T C OR10A2 Silent p.F15F 0.15 TCGA-BR-4292-01 11 69063312 69063312 G A MYEOV Missense_Mutation p.R132Q 0.22 tolerated_low_confidence(0.34) benign(0.033) TCGA-BR-4292-01 11 70507740 70507741 - T SHANK2 Frame_Shift_Ins p.D634Rfs*3 0.41 TCGA-BR-4292-01 11 71806464 71806464 C T LRTOMT Intron 0.28 TCGA-BR-4292-01 11 71931995 71931995 T G FOLR2 Missense_Mutation p.F78V 0.21 deleterious(0) probably_damaging(0.973) TCGA-BR-4292-01 11 723305 723305 C - EPS8L2 Frame_Shift_Del p.P471Rfs*49 0.34 TCGA-BR-4292-01 11 72396593 72396593 G T ARAP1 3'UTR 0.64 TCGA-BR-4292-01 11 73714711 73714711 T - UCP3 Intron 0.40 TCGA-BR-4292-01 11 73785348 73785348 G A C2CD3 Missense_Mutation p.T1634M 0.33 deleterious(0) probably_damaging(0.995) TCGA-BR-4292-01 11 73829364 73829364 T - C2CD3 Frame_Shift_Del p.I477* 0.13 TCGA-BR-4292-01 11 74800716 74800716 C T OR2AT4 Missense_Mutation p.V15I 0.37 tolerated(0.57) benign(0.002) TCGA-BR-4292-01 11 75146602 75146602 G A GDPD5 Nonsense_Mutation p.R590* 0.31 TCGA-BR-4292-01 11 755877 755885 AGCCATCGA - TALDO1 Splice_Site p.X33_splice 0.38 TCGA-BR-4292-01 11 86133684 86133684 G A CCDC81 Missense_Mutation p.R629H 0.44 deleterious(0.04) benign(0.063) TCGA-BR-4292-01 11 86161430 86161430 G A ME3 Silent p.S310S 0.38 TCGA-BR-4292-01 11 86270753 86270753 C T ME3 Missense_Mutation p.R99Q 0.33 tolerated(0.53) benign(0.004) TCGA-BR-4292-01 11 88780385 88780385 G A GRM5 Missense_Mutation p.T219I 0.25 deleterious(0) probably_damaging(0.938) TCGA-BR-4292-01 11 89431831 89431831 T C FOLH1B RNA 0.35 TCGA-BR-4292-01 11 9009687 9009687 T C NRIP3 Missense_Mutation p.D106G 0.35 deleterious(0.04) probably_damaging(0.957) TCGA-BR-4292-01 11 9191462 9191462 G A DENND5A Missense_Mutation p.R698W 0.16 deleterious(0.03) probably_damaging(0.982) TCGA-BR-4292-01 11 92088438 92088438 G C FAT3 Missense_Mutation p.E1054Q 0.29 probably_damaging(1) TCGA-BR-4292-01 11 94704653 94704653 T C CWC15 Splice_Site p.X44_splice 0.39 TCGA-BR-4292-01 11 94730458 94730458 T - KDM4D 5'UTR 0.67 TCGA-BR-4292-01 11 96086838 96086838 T C CCDC82 Missense_Mutation p.Y536C 0.29 tolerated(0.11) probably_damaging(0.996) TCGA-BR-4292-01 12 104030991 104030991 G A STAB2 Missense_Mutation p.R229Q 0.31 tolerated(0.82) benign(0.001) TCGA-BR-4292-01 12 104733053 104733053 T C TXNRD1 Splice_Site p.X627_splice 0.13 TCGA-BR-4292-01 12 10587929 10587929 T - KLRC2 Frame_Shift_Del p.T90Qfs*2 0.17 TCGA-BR-4292-01 12 10762434 10762434 C T MAGOHB Missense_Mutation p.R87Q 0.27 tolerated(0.06) benign(0.023) TCGA-BR-4292-01 12 109017170 109017170 A C SELPLG Missense_Mutation p.V321G 0.12 tolerated(0.53) benign(0.303) TCGA-BR-4292-01 12 109509471 109509471 C T USP30 Missense_Mutation p.R179C 0.35 tolerated(0.05) benign(0.064) TCGA-BR-4292-01 12 110019240 110019240 C - MVK Frame_Shift_Del p.A141Rfs*18 0.33 TCGA-BR-4292-01 12 110206924 110206924 G A FAM222A Missense_Mutation p.C397Y 0.54 deleterious(0) probably_damaging(0.992) TCGA-BR-4292-01 12 112696395 112696395 C T HECTD4 Silent p.A865A 0.31 TCGA-BR-4292-01 12 114793517 114793517 G T TBX5 Silent p.T459T 0.45 TCGA-BR-4292-01 12 117465997 117465997 G A FBXW8 3'UTR 0.22 TCGA-BR-4292-01 12 117672425 117672425 C T NOS1 Silent p.P1094P 0.28 TCGA-BR-4292-01 12 117728174 117728174 G A NOS1 Missense_Mutation p.R304C 0.25 deleterious(0) probably_damaging(0.991) TCGA-BR-4292-01 12 120313974 120313975 - C CIT 5'UTR 0.14 TCGA-BR-4292-01 12 120585995 120585995 C T GCN1L1 Missense_Mutation p.V1568I 0.24 probably_damaging(0.987) TCGA-BR-4292-01 12 120651713 120651713 G A PXN Missense_Mutation p.R495W 0.55 deleterious(0) probably_damaging(0.989) TCGA-BR-4292-01 12 120657166 120657167 - C PXN Intron 0.33 TCGA-BR-4292-01 12 121014523 121014523 C T RNF10 3'UTR 0.30 TCGA-BR-4292-01 12 121458651 121458651 A C OASL Missense_Mutation p.S420A 0.44 tolerated(0.56) benign(0.248) TCGA-BR-4292-01 12 121878950 121878950 C T KDM2B Missense_Mutation p.R1124Q 0.36 deleterious(0) probably_damaging(0.996) TCGA-BR-4292-01 12 123344320 123344320 A G HIP1R Missense_Mutation p.D803G 0.32 deleterious(0.01) possibly_damaging(0.596) TCGA-BR-4292-01 12 123481982 123481982 G A PITPNM2 Silent p.N454N 0.37 TCGA-BR-4292-01 12 124887004 124887004 G T NCOR2 Missense_Mutation p.A529E 0.30 unknown(0) TCGA-BR-4292-01 12 12630345 12630345 C T DUSP16 Missense_Mutation p.A474T 0.13 tolerated(0.36) benign(0) TCGA-BR-4292-01 12 130184470 130184470 G A TMEM132D Missense_Mutation p.R285C 0.29 deleterious(0) probably_damaging(0.924) TCGA-BR-4292-01 12 13128322 13128322 C - HEBP1 Frame_Shift_Del p.D164Tfs*12 0.28 TCGA-BR-4292-01 12 132504627 132504627 C T EP400 Silent p.P1437P 0.20 TCGA-BR-4292-01 12 132588802 132588802 G A EP400NL Intron 0.30 TCGA-BR-4292-01 12 133350862 133350862 C T GOLGA3 Silent p.T1396T 0.38 TCGA-BR-4292-01 12 14577801 14577802 - A ATF7IP Frame_Shift_Ins p.N320Kfs*4 0.23 TCGA-BR-4292-01 12 14578360 14578360 A - ATF7IP Frame_Shift_Del p.D506Mfs*17 0.18 TCGA-BR-4292-01 12 1481092 1481092 G T ERC1 Silent p.V958V 0.23 TCGA-BR-4292-01 12 16055920 16055920 T C STRAP 3'UTR 0.30 TCGA-BR-4292-01 12 1755092 1755092 G A WNT5B Missense_Mutation p.A252T 0.43 deleterious(0) probably_damaging(0.999) TCGA-BR-4292-01 12 18889158 18889158 A - PLCZ1 Frame_Shift_Del p.F44Lfs*7 0.29 TCGA-BR-4292-01 12 20806894 20806894 C A PDE3A Missense_Mutation p.A980D 0.26 deleterious(0) possibly_damaging(0.901) TCGA-BR-4292-01 12 22005053 22005053 C T ABCC9 Missense_Mutation p.R916Q 0.32 tolerated(0.06) benign(0.165) TCGA-BR-4292-01 12 23999074 23999074 G T SOX5 Silent p.T108T 0.24 TCGA-BR-4292-01 12 26217838 26217838 C T RASSF8 Missense_Mutation p.R171C 0.29 deleterious(0.02) benign(0.165) TCGA-BR-4292-01 12 26752167 26752167 G A ITPR2 Missense_Mutation p.R1305C 0.32 deleterious(0) probably_damaging(0.999) TCGA-BR-4292-01 12 27950929 27950929 G A KLHL42 Missense_Mutation p.G450S 0.33 tolerated(0.15) probably_damaging(0.999) TCGA-BR-4292-01 12 280307 280307 C T IQSEC3 Missense_Mutation p.P1032S 0.24 tolerated(0.75) benign(0.039) TCGA-BR-4292-01 12 29423430 29423430 G A FAR2 Silent p.T16T 0.37 TCGA-BR-4292-01 12 31249595 31249595 G A DDX11 Missense_Mutation p.G516R 0.34 deleterious(0.04) possibly_damaging(0.581) TCGA-BR-4292-01 12 3128323 3128323 G A TEAD4 Silent p.P190P 0.24 TCGA-BR-4292-01 12 42499816 42499816 A - GXYLT1 Frame_Shift_Del p.L223Yfs*11 0.25 TCGA-BR-4292-01 12 42859016 42859016 C T PRICKLE1 Missense_Mutation p.A274T 0.24 deleterious(0) probably_damaging(1) TCGA-BR-4292-01 12 44180569 44180569 T - IRAK4 3'UTR 0.23 TCGA-BR-4292-01 12 46246296 46246296 C T ARID2 Missense_Mutation p.R1464C 0.37 tolerated_low_confidence(0.1) probably_damaging(0.989) TCGA-BR-4292-01 12 4668105 4668106 - T RAD51AP1 Frame_Shift_Ins p.L336Ffs*8 0.35 TCGA-BR-4292-01 12 4719362 4719362 A - DYRK4 Frame_Shift_Del p.R355Dfs*12 0.27 TCGA-BR-4292-01 12 49725380 49725381 - C TROAP Frame_Shift_Ins p.Q775Pfs*19 0.29 TCGA-BR-4292-01 12 50025223 50025223 G T PRPF40B Missense_Mutation p.G42W 0.26 deleterious(0.01) unknown(0) TCGA-BR-4292-01 12 50386088 50386088 G C RACGAP1 Silent p.A506A 0.29 TCGA-BR-4292-01 12 50847266 50847267 - T LARP4 Frame_Shift_Ins p.A279Cfs*2 0.21 TCGA-BR-4292-01 12 51394196 51394196 G A SLC11A2 Nonsense_Mutation p.R175* 0.31 TCGA-BR-4292-01 12 52761184 52761184 C T KRT85 Silent p.S2S 0.36 TCGA-BR-4292-01 12 54107930 54107930 G A CALCOCO1 Silent p.A526A 0.32 TCGA-BR-4292-01 12 54338837 54338837 C T HOXC13 Missense_Mutation p.R264C 0.41 deleterious(0) probably_damaging(0.98) TCGA-BR-4292-01 12 54350327 54350327 G A HOXC12 Missense_Mutation p.E276K 0.24 deleterious(0) probably_damaging(0.985) TCGA-BR-4292-01 12 55759486 55759486 T - OR6C75 Frame_Shift_Del p.L200* 0.68 TCGA-BR-4292-01 12 56094788 56094788 G - ITGA7 Frame_Shift_Del p.Q189Kfs*95 0.23 TCGA-BR-4292-01 12 56362650 56362650 T - CDK2 Frame_Shift_Del p.N136Tfs*8 0.27 TCGA-BR-4292-01 12 56504448 56504448 C T PA2G4 Missense_Mutation p.R272C 0.11 tolerated(0.08) benign(0.003) TCGA-BR-4292-01 12 56559113 56559113 G - SMARCC2 Frame_Shift_Del p.P1043Lfs*18 0.33 TCGA-BR-4292-01 12 56563355 56563355 G A SMARCC2 Silent p.T860T 0.38 TCGA-BR-4292-01 12 56622977 56622977 C T NABP2 Missense_Mutation p.R206W 0.29 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-BR-4292-01 12 56718087 56718087 G A PAN2 Missense_Mutation p.A640V 0.25 tolerated(0.34) benign(0.011) TCGA-BR-4292-01 12 56995134 56995134 G A BAZ2A Missense_Mutation p.T1377M 0.42 deleterious(0.02) possibly_damaging(0.694) TCGA-BR-4292-01 12 57578171 57578171 C T LRP1 Missense_Mutation p.T2041M 0.30 probably_damaging(0.912) TCGA-BR-4292-01 12 57625344 57625344 G A SHMT2 Splice_Site p.X104_splice 0.36 TCGA-BR-4292-01 12 57867953 57867953 C T ARHGAP9 Missense_Mutation p.R597Q 0.38 tolerated(0.07) benign(0.056) TCGA-BR-4292-01 12 57921401 57921401 C - MBD6 Frame_Shift_Del p.Q734Nfs*18 0.36 TCGA-BR-4292-01 12 58004353 58004353 C - ARHGEF25 Frame_Shift_Del p.P35Qfs*6 0.35 TCGA-BR-4292-01 12 62960172 62960172 A - MON2 Frame_Shift_Del p.T1424Qfs*8 0.25 TCGA-BR-4292-01 12 64609628 64609628 G A C12orf66 Silent p.H117H 0.33 TCGA-BR-4292-01 12 66546105 66546105 C T TMBIM4 Silent p.A86A 0.23 TCGA-BR-4292-01 12 66771012 66771012 G A GRIP1 Missense_Mutation p.S840F 0.32 deleterious(0.03) probably_damaging(0.968) TCGA-BR-4292-01 12 6787521 6787521 G - ZNF384 Frame_Shift_Del p.P153Lfs*16 0.19 TCGA-BR-4292-01 12 69250106 69250106 C T CPM 3'UTR 0.15 TCGA-BR-4292-01 12 7024935 7024935 A - ENO2 5'UTR 0.32 TCGA-BR-4292-01 12 71974201 71974201 A G LGR5 Missense_Mutation p.Q517R 0.35 tolerated(0.11) benign(0.091) TCGA-BR-4292-01 12 7362774 7362774 G A PEX5 Silent p.A640A 0.35 TCGA-BR-4292-01 12 7475033 7475033 C T ACSM4 Missense_Mutation p.R341W 0.14 deleterious(0) possibly_damaging(0.766) TCGA-BR-4292-01 12 76461164 76461164 C T NAP1L1 Missense_Mutation p.G65R 0.33 tolerated(0.06) benign(0.03) TCGA-BR-4292-01 12 7649629 7649629 G A CD163 Silent p.D293D 0.33 TCGA-BR-4292-01 12 77440093 77440093 C T E2F7 Missense_Mutation p.R185H 0.30 deleterious(0) probably_damaging(1) TCGA-BR-4292-01 12 81283062 81283062 G T LIN7A Missense_Mutation p.L57I 0.12 deleterious(0) possibly_damaging(0.874) TCGA-BR-4292-01 12 83324294 83324294 G A TMTC2 Missense_Mutation p.R523H 0.28 deleterious(0) benign(0.377) TCGA-BR-4292-01 12 85266867 85266867 G A SLC6A15 Nonsense_Mutation p.Q370* 0.14 TCGA-BR-4292-01 12 85547850 85547850 G A LRRIQ1 Silent p.S1566S 0.35 TCGA-BR-4292-01 12 8630103 8630103 T - CLEC6A 3'UTR 0.21 TCGA-BR-4292-01 12 88524079 88524079 T - CEP290 Frame_Shift_Del p.N212Tfs*14 0.34 TCGA-BR-4292-01 12 9144878 9144878 G A KLRG1 Silent p.V53V 0.29 TCGA-BR-4292-01 12 91449951 91449951 A G KERA Silent p.T36T 0.06 TCGA-BR-4292-01 12 9231878 9231878 G T A2M Silent p.T1027T 0.30 TCGA-BR-4292-01 12 9246145 9246145 C T A2M Missense_Mutation p.R719H 0.27 tolerated(0.16) benign(0.002) TCGA-BR-4292-01 12 9318694 9318694 G A PZP Nonsense_Mutation p.R738* 0.39 TCGA-BR-4292-01 12 9353635 9353635 C A PZP Missense_Mutation p.A175S 0.22 tolerated(0.17) benign(0.197) TCGA-BR-4292-01 13 101710303 101710303 G A NALCN Missense_Mutation p.R1671C 0.13 deleterious(0.02) possibly_damaging(0.795) TCGA-BR-4292-01 13 109459100 109459100 T C MYO16 Missense_Mutation p.I250T 0.06 tolerated(0.43) benign(0.008) TCGA-BR-4292-01 13 112722004 112722004 A G SOX1 Missense_Mutation p.H11R 0.30 tolerated(0.41) benign(0.177) TCGA-BR-4292-01 13 114174950 114174950 C T TMCO3 Silent p.T415T 0.34 TCGA-BR-4292-01 13 20235889 20235889 G A MPHOSPH8 Missense_Mutation p.D615N 0.29 deleterious(0.02) probably_damaging(1) TCGA-BR-4292-01 13 21976959 21976959 C T ZDHHC20 Silent p.A139A 0.20 TCGA-BR-4292-01 13 25255819 25255820 - A ATP12A Frame_Shift_Ins p.N45Kfs*14 0.20 TCGA-BR-4292-01 13 26151257 26151257 G A ATP8A2 Missense_Mutation p.R588Q 0.28 deleterious(0.03) possibly_damaging(0.847) TCGA-BR-4292-01 13 31729764 31729764 A T HSPH1 Missense_Mutation p.S65T 0.25 tolerated(0.39) possibly_damaging(0.609) TCGA-BR-4292-01 13 33347331 33347331 G A PDS5B Missense_Mutation p.V1393I 0.14 tolerated_low_confidence(0.05) benign(0.053) TCGA-BR-4292-01 13 35733663 35733663 A - NBEA Frame_Shift_Del p.N1121Mfs*9 0.27 TCGA-BR-4292-01 13 38266432 38266432 C T TRPC4 Missense_Mutation p.R313H 0.19 deleterious(0.01) probably_damaging(0.912) TCGA-BR-4292-01 13 39262147 39262147 C T FREM2 Silent p.S222S 0.16 TCGA-BR-4292-01 13 39422774 39422774 G A FREM2 Missense_Mutation p.A2116T 0.39 tolerated(0.72) benign(0.032) TCGA-BR-4292-01 13 42277527 42277527 G A VWA8 Missense_Mutation p.T1046M 0.33 deleterious(0.01) benign(0.302) TCGA-BR-4292-01 13 42742861 42742861 G A DGKH Missense_Mutation p.R425Q 0.36 deleterious(0.03) probably_damaging(0.974) TCGA-BR-4292-01 13 45010839 45010839 T C TSC22D1 Intron 0.34 TCGA-BR-4292-01 13 46543351 46543351 C T ZC3H13 Missense_Mutation p.A1110T 0.57 unknown(0) TCGA-BR-4292-01 13 46559533 46559533 C T ZC3H13 Missense_Mutation p.R540H 0.29 probably_damaging(0.997) TCGA-BR-4292-01 13 46616316 46616316 A G ZC3H13 Missense_Mutation p.S108P 0.27 unknown(0) TCGA-BR-4292-01 13 47408958 47408958 C T HTR2A 3'UTR 0.29 TCGA-BR-4292-01 13 50125518 50125518 T C RCBTB1 Silent p.G266G 0.38 TCGA-BR-4292-01 13 61102603 61102603 G A TDRD3 Missense_Mutation p.R415Q 0.29 deleterious(0.02) possibly_damaging(0.761) TCGA-BR-4292-01 13 73320743 73320743 C T BORA Missense_Mutation p.P326S 0.32 tolerated(0.07) possibly_damaging(0.559) TCGA-BR-4292-01 13 78475267 78475267 A - EDNRB Frame_Shift_Del p.Y383Ifs*3 0.37 TCGA-BR-4292-01 13 90883462 90883462 A G MIR622 RNA 0.33 TCGA-BR-4292-01 13 95279412 95279412 G A GPR180 Missense_Mutation p.R437H 0.32 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BR-4292-01 13 96743551 96743551 C T HS6ST3 Silent p.R145R 0.28 TCGA-BR-4292-01 13 99092253 99092253 C A FARP1 Nonsense_Mutation p.C824* 0.07 TCGA-BR-4292-01 14 100728643 100728644 - A YY1 Frame_Shift_Ins p.D231Rfs*3 0.29 TCGA-BR-4292-01 14 105207521 105207522 - C ADSSL1 Frame_Shift_Ins p.K291Qfs*16 0.26 TCGA-BR-4292-01 14 105346747 105346747 C T CEP170B Missense_Mutation p.R153W 0.23 deleterious(0) probably_damaging(0.994) TCGA-BR-4292-01 14 20779663 20779663 A G CCNB1IP1 3'UTR 0.33 TCGA-BR-4292-01 14 20854765 20854765 A C TEP1 Missense_Mutation p.L901R 0.33 deleterious(0) probably_damaging(0.984) TCGA-BR-4292-01 14 20916315 20916315 T C OSGEP Missense_Mutation p.M218V 0.34 tolerated(0.45) benign(0.014) TCGA-BR-4292-01 14 20925577 20925578 CT - APEX1 Frame_Shift_Del p.L291Vfs*6 0.26 TCGA-BR-4292-01 14 21238745 21238745 G A EDDM3B Missense_Mutation p.G146S 0.41 tolerated(1) benign(0) TCGA-BR-4292-01 14 21936840 21936840 G A RAB2B Silent p.Y86Y 0.07 TCGA-BR-4292-01 14 22434062 22434062 G T TRAV12-3 Missense_Mutation p.A39S 0.37 tolerated(0.7) benign(0.061) TCGA-BR-4292-01 14 22616582 22616582 C T TRAV27 Missense_Mutation p.A108V 0.09 deleterious(0) benign(0.415) TCGA-BR-4292-01 14 23446041 23446041 A G AJUBA Intron 0.36 TCGA-BR-4292-01 14 23745054 23745054 C T HOMEZ Silent p.P461P 0.17 TCGA-BR-4292-01 14 23745310 23745310 A - HOMEZ Frame_Shift_Del p.L376Yfs*14 0.36 TCGA-BR-4292-01 14 23887443 23887443 C T MYH7 Missense_Mutation p.R1382Q 0.39 deleterious(0.01) probably_damaging(0.994) TCGA-BR-4292-01 14 24040440 24040441 CC A JPH4 Frame_Shift_Del p.G500Vfs*10 0.09 TCGA-BR-4292-01 14 24525864 24525864 T C LRRC16B Missense_Mutation p.F300S 0.31 deleterious(0) possibly_damaging(0.621) TCGA-BR-4292-01 14 24542775 24542776 - T CPNE6 Frame_Shift_Ins p.E82* 0.27 TCGA-BR-4292-01 14 24729876 24729876 C T TGM1 Silent p.T179T 0.30 TCGA-BR-4292-01 14 24780931 24780931 C T LTB4R2 Missense_Mutation p.P354L 0.50 tolerated_low_confidence(0.34) benign(0) TCGA-BR-4292-01 14 24880323 24880323 T C NYNRIN Missense_Mutation p.M819T 0.32 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-BR-4292-01 14 24884436 24884436 C T NYNRIN Missense_Mutation p.R1161C 0.34 tolerated(0.14) benign(0.416) TCGA-BR-4292-01 14 31071214 31071214 A - G2E3 Frame_Shift_Del p.A298Pfs*39 0.22 TCGA-BR-4292-01 14 31424869 31424869 C T STRN3 Silent p.T139T 0.20 TCGA-BR-4292-01 14 34985626 34985626 C T EAPP Missense_Mutation p.V250M 0.34 tolerated(0.1) benign(0.139) TCGA-BR-4292-01 14 35871169 35871169 T - NFKBIA 3'UTR 0.37 TCGA-BR-4292-01 14 36987203 36987203 C T NKX2-1 Silent p.A162A 0.27 TCGA-BR-4292-01 14 44974717 44974717 G A FSCB Missense_Mutation p.R492W 0.39 deleterious(0.03) possibly_damaging(0.722) TCGA-BR-4292-01 14 45478141 45478141 G A FAM179B Missense_Mutation p.R977H 0.31 deleterious(0) probably_damaging(1) TCGA-BR-4292-01 14 45642287 45642288 - CT FANCM Frame_Shift_Ins p.E735Lfs*26 0.24 TCGA-BR-4292-01 14 47121001 47121001 G A RPL10L 5'UTR 0.27 TCGA-BR-4292-01 14 50605444 50605445 - T SOS2 Frame_Shift_Ins p.K949Efs*10 0.24 TCGA-BR-4292-01 14 51710663 51710663 C T TMX1 Missense_Mutation p.A81V 0.30 deleterious(0) possibly_damaging(0.642) TCGA-BR-4292-01 14 52481919 52481919 G - NID2 Frame_Shift_Del p.R1035Gfs*67 0.37 TCGA-BR-4292-01 14 53513450 53513480 AATCAGTTTTAGGCCATTCATGTCCTTCAAG TCAGTTTTAGGCCATTCATGTCCTTCA DDHD1 3'UTR 0.33 TCGA-BR-4292-01 14 55836420 55836420 C T ATG14 Missense_Mutation p.A466T 0.28 tolerated(0.6) benign(0.028) TCGA-BR-4292-01 14 62547711 62547711 G A SYT16 Missense_Mutation p.V385I 0.16 tolerated(0.36) benign(0.014) TCGA-BR-4292-01 14 64634309 64634309 T C SYNE2 Silent p.D5619D 0.33 TCGA-BR-4292-01 14 66082954 66082956 GAG - FUT8 In_Frame_Del p.R118del 0.24 TCGA-BR-4292-01 14 67826452 67826452 G A ATP6V1D 5'UTR 0.14 TCGA-BR-4292-01 14 67862133 67862133 C T PLEK2 Silent p.P125P 0.26 TCGA-BR-4292-01 14 69795198 69795198 C T GALNT16 Silent p.D200D 0.21 TCGA-BR-4292-01 14 71542931 71542931 C T PCNX Missense_Mutation p.S1711L 0.25 deleterious(0) probably_damaging(0.997) TCGA-BR-4292-01 14 73718481 73718481 G - PAPLN Frame_Shift_Del p.D235Tfs*210 0.32 TCGA-BR-4292-01 14 74205773 74205773 G - ELMSAN1 Frame_Shift_Del p.N314Tfs*4 0.38 TCGA-BR-4292-01 14 74413287 74413287 C T FAM161B Missense_Mutation p.A89T 0.33 deleterious(0.01) benign(0.021) TCGA-BR-4292-01 14 75265533 75265533 A - YLPM1 Frame_Shift_Del p.M1180Cfs*27 0.34 TCGA-BR-4292-01 14 75296006 75296006 A G YLPM1 Missense_Mutation p.D2085G 0.28 probably_damaging(0.997) TCGA-BR-4292-01 14 75367834 75367834 C T DLST Silent p.G375G 0.34 TCGA-BR-4292-01 14 76012944 76012944 C T BATF Missense_Mutation p.P103L 0.26 deleterious_low_confidence(0.01) benign(0.201) TCGA-BR-4292-01 14 76368503 76368503 G A TTLL5 Silent p.G1253G 0.38 TCGA-BR-4292-01 14 76620616 76620617 - A GPATCH2L Intron 0.39 TCGA-BR-4292-01 14 76928920 76928920 G A ESRRB Missense_Mutation p.E144K 0.31 deleterious(0.04) possibly_damaging(0.495) TCGA-BR-4292-01 14 77942189 77942189 C T ISM2 Missense_Mutation p.A489T 0.27 deleterious(0) benign(0.134) TCGA-BR-4292-01 14 86088949 86088949 C - FLRT2 Frame_Shift_Del p.G366Afs*52 0.30 TCGA-BR-4292-01 14 88729810 88729810 C T KCNK10 Silent p.P46P 0.22 TCGA-BR-4292-01 14 90509501 90509501 C A TDP1 3'UTR 0.30 TCGA-BR-4292-01 14 91247111 91247111 C T TTC7B Missense_Mutation p.R139Q 0.31 deleterious(0.01) benign(0.277) TCGA-BR-4292-01 14 94087971 94087971 A G UNC79 Silent p.E1287E 0.35 TCGA-BR-4292-01 14 94088050 94088050 A - UNC79 Frame_Shift_Del p.K1316Sfs*12 0.26 TCGA-BR-4292-01 14 94674876 94674876 G A PPP4R4 Silent p.T89T 0.26 TCGA-BR-4292-01 14 94964713 94964713 C T SERPINA12 Missense_Mutation p.A8T 0.32 tolerated(0.08) benign(0.196) TCGA-BR-4292-01 14 95053815 95053815 C T SERPINA5 Missense_Mutation p.T39M 0.31 tolerated(0.22) benign(0.02) TCGA-BR-4292-01 15 100331866 100331866 T C AC090825.1 5'Flank 0.36 TCGA-BR-4292-01 15 100695507 100695507 G A ADAMTS17 Silent p.D400D 0.23 TCGA-BR-4292-01 15 100821466 100821466 C T ADAMTS17 Missense_Mutation p.A253T 0.33 tolerated(0.13) probably_damaging(0.995) TCGA-BR-4292-01 15 101588759 101588759 A C LRRK1 Missense_Mutation p.T1066P 0.35 tolerated(0.08) benign(0.421) TCGA-BR-4292-01 15 101717570 101717570 G A CHSY1 3'UTR 0.43 TCGA-BR-4292-01 15 102304883 102304883 C T DNM1P47 RNA 0.31 TCGA-BR-4292-01 15 102516488 102516488 C - WASH3P 3'Flank 0.22 TCGA-BR-4292-01 15 23689630 23689630 C T GOLGA6L2 Silent p.A77A 0.13 TCGA-BR-4292-01 15 25315626 25315626 C G SNORD116-8 RNA 0.24 TCGA-BR-4292-01 15 25488653 25488653 G T SNORD115-40 5'Flank 0.48 TCGA-BR-4292-01 15 34113561 34113561 G A RYR3 Missense_Mutation p.A3636T 0.37 possibly_damaging(0.803) TCGA-BR-4292-01 15 34145278 34145278 T C RYR3 Missense_Mutation p.V4554A 0.50 benign(0.207) TCGA-BR-4292-01 15 34549916 34549916 A - SLC12A6 Frame_Shift_Del p.L206Yfs*28 0.23 TCGA-BR-4292-01 15 34649679 34649679 G A NUTM1 Missense_Mutation p.R1129H 0.23 tolerated(0.3) possibly_damaging(0.776) TCGA-BR-4292-01 15 34655878 34655878 C T LPCAT4 Missense_Mutation p.R232H 0.33 tolerated(0.25) possibly_damaging(0.879) TCGA-BR-4292-01 15 35529913 35529913 C T ANP32AP1 RNA 0.38 TCGA-BR-4292-01 15 37329090 37329090 T - MEIS2 Frame_Shift_Del p.K275Nfs*12 0.30 TCGA-BR-4292-01 15 40866567 40866567 C T RPUSD2 3'UTR 0.25 TCGA-BR-4292-01 15 41366688 41366688 G A INO80 Nonsense_Mutation p.R403* 0.30 TCGA-BR-4292-01 15 41749961 41749963 AGA - RTF1 In_Frame_Del p.E184del 0.35 TCGA-BR-4292-01 15 41800405 41800405 C A LTK Nonsense_Mutation p.G371* 0.29 TCGA-BR-4292-01 15 41804949 41804949 C T LTK Silent p.L105L 0.45 TCGA-BR-4292-01 15 42105236 42105236 G A MAPKBP1 Silent p.T252T 0.25 TCGA-BR-4292-01 15 43021275 43021275 C A CDAN1 Missense_Mutation p.R864L 0.35 deleterious(0) probably_damaging(0.979) TCGA-BR-4292-01 15 43622232 43622232 G T LCMT2 Missense_Mutation p.S152R 0.14 deleterious(0.01) benign(0.249) TCGA-BR-4292-01 15 43891410 43891410 G A CKMT1B Missense_Mutation p.R398Q 0.29 tolerated(0.18) benign(0.168) TCGA-BR-4292-01 15 44131849 44131849 C T WDR76 Nonsense_Mutation p.R219* 0.13 TCGA-BR-4292-01 15 50901830 50901830 C T TRPM7 Missense_Mutation p.R843Q 0.22 tolerated(0.06) benign(0.004) TCGA-BR-4292-01 15 51634199 51634199 C T GLDN Silent p.A106A 0.30 TCGA-BR-4292-01 15 52510876 52510876 T C MYO5C Missense_Mutation p.E1265G 0.23 deleterious(0.01) benign(0.001) TCGA-BR-4292-01 15 54793039 54793039 C T UNC13C Nonsense_Mutation p.Q1722* 0.27 TCGA-BR-4292-01 15 55626105 55626105 C T PIGB Missense_Mutation p.R232C 0.10 deleterious(0) probably_damaging(1) TCGA-BR-4292-01 15 55759182 55759182 T - DYX1C1 Frame_Shift_Del p.I195* 0.30 TCGA-BR-4292-01 15 57810601 57810601 G A CGNL1 Missense_Mutation p.R874Q 0.32 tolerated(0.9) benign(0.003) TCGA-BR-4292-01 15 62148607 62148607 G A VPS13C Nonsense_Mutation p.R3652* 0.29 TCGA-BR-4292-01 15 63054564 63054564 A G TLN2 Missense_Mutation p.N1625D 0.24 tolerated(0.14) benign(0.125) TCGA-BR-4292-01 15 64686305 64686305 A - TRIP4 Frame_Shift_Del p.D90Mfs*4 0.28 TCGA-BR-4292-01 15 64966762 64966762 G A ZNF609 Missense_Mutation p.R570Q 0.32 tolerated(0.1) possibly_damaging(0.704) TCGA-BR-4292-01 15 65686807 65686807 G - IGDCC4 Frame_Shift_Del p.S553Afs*2 0.29 TCGA-BR-4292-01 15 66220800 66220800 G - MEGF11 Frame_Shift_Del p.V547Sfs*253 0.20 TCGA-BR-4292-01 15 68623337 68623337 C A ITGA11 Missense_Mutation p.G628V 0.36 deleterious(0) probably_damaging(1) TCGA-BR-4292-01 15 69238555 69238555 A - SPESP1 Frame_Shift_Del p.I230Ffs*2 0.24 TCGA-BR-4292-01 15 70961075 70961076 - T UACA Frame_Shift_Ins p.L650Ifs*9 0.27 TCGA-BR-4292-01 15 72170488 72170488 G A MYO9A Missense_Mutation p.R1942C 0.07 deleterious(0) probably_damaging(0.999) TCGA-BR-4292-01 15 72502148 72502148 A G PKM Missense_Mutation p.L144P 0.06 tolerated(0.06) benign(0.138) TCGA-BR-4292-01 15 72638822 72638822 C A HEXA Intron 0.27 TCGA-BR-4292-01 15 74315711 74315711 G A PML Missense_Mutation p.R382H 0.25 deleterious(0.02) benign(0.219) TCGA-BR-4292-01 15 74425791 74425791 G A ISLR2 Silent p.P232P 0.42 TCGA-BR-4292-01 15 74923977 74923977 C T EDC3 3'UTR 0.89 TCGA-BR-4292-01 15 75644674 75644674 C - NEIL1 Frame_Shift_Del p.F191Lfs*20 0.42 TCGA-BR-4292-01 15 75692403 75692403 C T SIN3A Missense_Mutation p.R611H 0.30 deleterious(0) probably_damaging(1) TCGA-BR-4292-01 15 76075484 76075484 C T RN7SL319P 5'Flank 0.36 TCGA-BR-4292-01 15 76222477 76222477 C T FBXO22 Intron 0.36 TCGA-BR-4292-01 15 78213901 78213901 C T RP11-114H24.7 Intron 0.40 TCGA-BR-4292-01 15 78588097 78588097 G - WDR61 Intron 0.14 TCGA-BR-4292-01 15 78780136 78780136 G A IREB2 Missense_Mutation p.A591T 0.15 tolerated(0.37) benign(0.237) TCGA-BR-4292-01 15 79356791 79356791 G A RASGRF1 Silent p.D118D 0.33 TCGA-BR-4292-01 15 80452206 80452206 G A FAH Missense_Mutation p.E101K 0.35 tolerated(0.34) benign(0.003) TCGA-BR-4292-01 15 83725144 83725147 AGTA - BTBD1 Frame_Shift_Del p.T185Rfs*15 0.27 TCGA-BR-4292-01 15 83805312 83805312 T - TM6SF1 Frame_Shift_Del p.L336* 0.28 TCGA-BR-4292-01 15 85410563 85410563 T A ALPK3 Missense_Mutation p.M1782K 0.34 deleterious(0.01) probably_damaging(0.98) TCGA-BR-4292-01 15 85634360 85634360 A - PDE8A Frame_Shift_Del p.K269Rfs*8 0.30 TCGA-BR-4292-01 15 86189060 86189060 T C AKAP13 Missense_Mutation p.F1417L 0.25 tolerated(0.07) benign(0.081) TCGA-BR-4292-01 15 89859551 89859551 T - POLG 3'UTR 0.26 TCGA-BR-4292-01 15 91428314 91428314 C T FES Silent p.H13H 0.32 TCGA-BR-4292-01 16 10575765 10575765 A C ATF7IP2 Missense_Mutation p.T570P 0.28 deleterious(0.02) benign(0.409) TCGA-BR-4292-01 16 111898 111898 C T RHBDF1 Missense_Mutation p.R369Q 0.26 deleterious(0) possibly_damaging(0.836) TCGA-BR-4292-01 16 11868230 11868230 C T ZC3H7A Silent p.L255L 0.36 TCGA-BR-4292-01 16 1370217 1370217 C T UBE2I Missense_Mutation p.S89L 0.26 deleterious(0.03) benign(0.222) TCGA-BR-4292-01 16 1374857 1374857 T - UBE2I 3'UTR 0.31 TCGA-BR-4292-01 16 1412640 1412640 T G GNPTG Missense_Mutation p.F213C 0.29 deleterious(0) probably_damaging(0.977) TCGA-BR-4292-01 16 14540788 14540788 C A PARN Missense_Mutation p.K607N 0.37 deleterious_low_confidence(0.04) benign(0.258) TCGA-BR-4292-01 16 15690765 15690765 T - KIAA0430 Frame_Shift_Del p.M1672Wfs*12 0.16 TCGA-BR-4292-01 16 1574907 1574907 G A IFT140 Missense_Mutation p.R959W 0.28 deleterious(0) possibly_damaging(0.656) TCGA-BR-4292-01 16 16235147 16235147 G C ABCC1 3'UTR 0.45 TCGA-BR-4292-01 16 1837726 1837726 A G NUBP2 Missense_Mutation p.Y128C 0.28 deleterious(0.01) benign(0.098) TCGA-BR-4292-01 16 19710946 19710946 C T C16orf62 Silent p.H1012H 0.37 TCGA-BR-4292-01 16 20373737 20373737 C T PDILT Missense_Mutation p.G469S 0.41 tolerated(0.34) benign(0.129) TCGA-BR-4292-01 16 21008625 21008625 C - DNAH3 Frame_Shift_Del p.G2194Efs*14 0.36 TCGA-BR-4292-01 16 21223001 21223001 G A ZP2 5'UTR 0.56 TCGA-BR-4292-01 16 21663892 21663892 C T IGSF6 Missense_Mutation p.A10T 0.38 tolerated(0.69) benign(0.002) TCGA-BR-4292-01 16 239997 239997 C T LUC7L Missense_Mutation p.R315Q 0.31 deleterious_low_confidence(0.03) unknown(0) TCGA-BR-4292-01 16 24817959 24817959 T C TNRC6A Missense_Mutation p.L1465S 0.36 deleterious(0) possibly_damaging(0.827) TCGA-BR-4292-01 16 24958802 24958802 C - ARHGAP17 Splice_Site p.X414_splice 0.24 TCGA-BR-4292-01 16 27475926 27475926 G A GTF3C1 Missense_Mutation p.R1863C 0.22 tolerated(0.06) benign(0.007) TCGA-BR-4292-01 16 2819161 2819163 TCT - SRRM2 In_Frame_Del p.S2648del 0.36 TCGA-BR-4292-01 16 2821616 2821616 G - TCEB2 Intron 0.29 TCGA-BR-4292-01 16 2882237 2882237 C T ZG16B 3'UTR 0.33 TCGA-BR-4292-01 16 28846629 28846629 C G ATXN2L Missense_Mutation p.A865G 0.29 tolerated(0.05) possibly_damaging(0.473) TCGA-BR-4292-01 16 28847350 28847350 G - ATXN2L Frame_Shift_Del p.Q1002Kfs*95 0.20 TCGA-BR-4292-01 16 28878130 28878130 G A SH2B1 Missense_Mutation p.A239T 0.42 tolerated(0.38) benign(0.001) TCGA-BR-4292-01 16 28925566 28925566 C T RABEP2 Silent p.L295L 0.24 TCGA-BR-4292-01 16 28970351 28970351 C T NFATC2IP Missense_Mutation p.T344M 0.13 tolerated(0.21) benign(0.022) TCGA-BR-4292-01 16 30409310 30409310 C - ZNF48 Frame_Shift_Del p.R249Dfs*43 0.41 TCGA-BR-4292-01 16 30507880 30507880 G A ITGAL Missense_Mutation p.V609M 0.38 tolerated(0.2) benign(0.1) TCGA-BR-4292-01 16 30616641 30616641 G - ZNF689 Frame_Shift_Del p.I150Sfs*24 0.38 TCGA-BR-4292-01 16 30732518 30732518 T C SRCAP Missense_Mutation p.S1088P 0.40 unknown(0) TCGA-BR-4292-01 16 30744953 30744953 C T SRCAP Missense_Mutation p.R2110C 0.33 probably_damaging(0.989) TCGA-BR-4292-01 16 31088883 31088883 C T ZNF646 Missense_Mutation p.A413V 0.28 tolerated(0.12) probably_damaging(0.961) TCGA-BR-4292-01 16 31123612 31123612 C T BCKDK 3'UTR 0.19 TCGA-BR-4292-01 16 31371765 31371765 T C ITGAX Missense_Mutation p.I281T 0.32 deleterious(0) probably_damaging(0.972) TCGA-BR-4292-01 16 31391664 31391664 C A ITGAX Silent p.T1046T 0.31 TCGA-BR-4292-01 16 3706167 3706167 C T DNASE1 Missense_Mutation p.R101C 0.31 deleterious(0) probably_damaging(0.999) TCGA-BR-4292-01 16 4384878 4384878 C G GLIS2 Missense_Mutation p.A141G 0.42 tolerated(0.95) benign(0.014) TCGA-BR-4292-01 16 4409582 4409582 G T CORO7 Missense_Mutation p.L717M 0.38 deleterious(0) possibly_damaging(0.883) TCGA-BR-4292-01 16 46731427 46731427 A G ORC6 Missense_Mutation p.Q230R 0.18 deleterious(0.01) benign(0.412) TCGA-BR-4292-01 16 47120147 47120148 - T NETO2 Frame_Shift_Ins p.N329Kfs*4 0.19 TCGA-BR-4292-01 16 47189556 47189557 - T ITFG1 3'UTR 0.27 TCGA-BR-4292-01 16 48119514 48119514 C T ABCC12 Missense_Mutation p.R1273H 0.29 deleterious(0.02) benign(0.347) TCGA-BR-4292-01 16 49315194 49315194 C A CBLN1 Missense_Mutation p.K61N 0.27 deleterious(0) possibly_damaging(0.821) TCGA-BR-4292-01 16 4935689 4935689 C - PPL Frame_Shift_Del p.Q990Rfs*31 0.28 TCGA-BR-4292-01 16 50263299 50263299 G A PAPD5 3'UTR 0.32 TCGA-BR-4292-01 16 5064993 5064993 C T SEC14L5 3'UTR 0.50 TCGA-BR-4292-01 16 50815288 50815288 G A CYLD Silent p.P550P 0.30 TCGA-BR-4292-01 16 54318212 54318212 G A IRX3 Missense_Mutation p.A466V 0.19 tolerated(0.17) possibly_damaging(0.483) TCGA-BR-4292-01 16 56673918 56673918 T - MT1A 3'UTR 0.27 TCGA-BR-4292-01 16 57060011 57060011 C T NLRC5 Missense_Mutation p.R386W 0.33 deleterious(0) possibly_damaging(0.556) TCGA-BR-4292-01 16 57060522 57060522 G A NLRC5 Missense_Mutation p.G556D 0.30 tolerated(0.35) benign(0.007) TCGA-BR-4292-01 16 57181521 57181521 A G CPNE2 Missense_Mutation p.Q533R 0.06 deleterious(0.03) benign(0.184) TCGA-BR-4292-01 16 57760011 57760011 C T CCDC135 Missense_Mutation p.A597V 0.25 tolerated(0.05) possibly_damaging(0.454) TCGA-BR-4292-01 16 58324964 58324964 C T PRSS54 Silent p.P54P 0.13 TCGA-BR-4292-01 16 58555109 58555110 - TAC CNOT1 In_Frame_Ins p.V2343dup 0.41 TCGA-BR-4292-01 16 58581500 58581500 T C CNOT1 Silent p.T1203T 0.23 TCGA-BR-4292-01 16 58581512 58581512 T C CNOT1 Silent p.L1199L 0.20 TCGA-BR-4292-01 16 66847501 66847501 C T NAE1 Missense_Mutation p.A334T 0.29 deleterious(0) possibly_damaging(0.754) TCGA-BR-4292-01 16 67268086 67268086 G A FHOD1 Missense_Mutation p.A507V 0.24 tolerated(0.1) benign(0.002) TCGA-BR-4292-01 16 67397608 67397608 G - LRRC36 Frame_Shift_Del p.T233Hfs*6 0.26 TCGA-BR-4292-01 16 67719395 67719395 G - GFOD2 Frame_Shift_Del p.P75Lfs*9 0.32 TCGA-BR-4292-01 16 68835713 68835713 G A CDH1 Missense_Mutation p.A102T 0.29 tolerated(0.18) benign(0.091) TCGA-BR-4292-01 16 71509780 71509780 G A ZNF19 Nonsense_Mutation p.R224* 0.32 TCGA-BR-4292-01 16 72830135 72830135 C T ZFHX3 Missense_Mutation p.R2149H 0.30 probably_damaging(0.998) TCGA-BR-4292-01 16 72984509 72984509 G A ZFHX3 Silent p.N1025N 0.35 TCGA-BR-4292-01 16 72993351 72993351 G A ZFHX3 Missense_Mutation p.R232C 0.34 probably_damaging(0.973) TCGA-BR-4292-01 16 75563418 75563418 G A CHST5 Missense_Mutation p.R289C 0.23 deleterious(0) probably_damaging(1) TCGA-BR-4292-01 16 75669691 75669691 G A KARS Missense_Mutation p.R256C 0.35 deleterious(0) probably_damaging(0.993) TCGA-BR-4292-01 16 75690320 75690320 A - TERF2IP Frame_Shift_Del p.N339Ifs*12 0.35 TCGA-BR-4292-01 16 77369762 77369762 C T ADAMTS18 Missense_Mutation p.G584R 0.44 deleterious(0.04) possibly_damaging(0.881) TCGA-BR-4292-01 16 83994222 83994222 G A OSGIN1 Missense_Mutation p.V85M 0.35 deleterious(0.01) possibly_damaging(0.649) TCGA-BR-4292-01 16 84088012 84088012 G A MBTPS1 3'UTR 0.62 TCGA-BR-4292-01 16 84088130 84088130 G A MBTPS1 Missense_Mutation p.P1028L 0.26 deleterious_low_confidence(0.01) probably_damaging(0.988) TCGA-BR-4292-01 16 84100196 84100196 C T MBTPS1 Missense_Mutation p.G751R 0.27 deleterious(0) probably_damaging(1) TCGA-BR-4292-01 16 85132790 85132790 G A FAM92B 3'UTR 0.31 TCGA-BR-4292-01 16 86544392 86544392 G A FOXF1 Missense_Mutation p.E73K 0.44 deleterious(0) probably_damaging(0.999) TCGA-BR-4292-01 16 86612295 86612295 C T FOXL1 5'UTR 0.43 TCGA-BR-4292-01 16 89351372 89351372 G A ANKRD11 Silent p.H526H 0.24 TCGA-BR-4292-01 17 10303844 10303844 C T MYH8 Missense_Mutation p.A1200T 0.32 deleterious(0.03) benign(0.114) TCGA-BR-4292-01 17 10355428 10355428 C T MYH4 Missense_Mutation p.E1190K 0.08 deleterious(0.01) possibly_damaging(0.87) TCGA-BR-4292-01 17 11713626 11713626 A G DNAH9 Missense_Mutation p.T2883A 0.30 possibly_damaging(0.896) TCGA-BR-4292-01 17 12919107 12919108 AC - ELAC2 Frame_Shift_Del p.V137Tfs*39 0.27 TCGA-BR-4292-01 17 1638935 1638935 C - WDR81 Frame_Shift_Del p.H1752Tfs*33 0.22 TCGA-BR-4292-01 17 17046886 17046886 C - MPRIP Frame_Shift_Del p.P353Qfs*30 0.33 TCGA-BR-4292-01 17 17696624 17696624 G - RAI1 Frame_Shift_Del p.A123Pfs*23 0.30 TCGA-BR-4292-01 17 18140896 18140896 C T LLGL1 Silent p.H571H 0.32 TCGA-BR-4292-01 17 18140961 18140961 T C LLGL1 Missense_Mutation p.V593A 0.25 tolerated(0.07) benign(0.129) TCGA-BR-4292-01 17 18286145 18286145 C T EVPLL Missense_Mutation p.R160C 0.50 deleterious(0) benign(0.001) TCGA-BR-4292-01 17 20107654 20107656 ACA - SPECC1 In_Frame_Del p.T100del 0.34 TCGA-BR-4292-01 17 21318995 21318995 C T KCNJ12 Missense_Mutation p.P114L 0.12 tolerated(0.32) benign(0.005) TCGA-BR-4292-01 17 21731489 21731489 C - UBBP4 Frame_Shift_Del p.D191Ifs*35 0.27 TCGA-BR-4292-01 17 2323660 2323660 G - METTL16 Frame_Shift_Del p.C432Vfs*88 0.34 TCGA-BR-4292-01 17 2570437 2570437 T - PAFAH1B1 Frame_Shift_Del p.F116Sfs*57 0.27 TCGA-BR-4292-01 17 26125843 26125843 G T NOS2 5'UTR 0.28 TCGA-BR-4292-01 17 26902512 26902512 C T ALDOC Silent p.K13K 0.34 TCGA-BR-4292-01 17 26958520 26958520 G A KIAA0100 Missense_Mutation p.H1426Y 0.24 deleterious(0.05) benign(0.001) TCGA-BR-4292-01 17 27209367 27209367 G A FLOT2 Silent p.D189D 0.29 TCGA-BR-4292-01 17 28505167 28505167 A - NSRP1 Frame_Shift_Del p.K86Rfs*23 0.31 TCGA-BR-4292-01 17 29556992 29556992 G T NF1 Missense_Mutation p.R997M 0.23 deleterious(0.01) probably_damaging(0.982) TCGA-BR-4292-01 17 29684298 29684298 A - NF1 Frame_Shift_Del p.K2628Nfs*16 0.37 TCGA-BR-4292-01 17 32956140 32956140 G T TMEM132E Missense_Mutation p.G329C 0.31 deleterious(0) possibly_damaging(0.669) TCGA-BR-4292-01 17 33520676 33520676 G - SLC35G3 Frame_Shift_Del p.C218Afs*34 0.27 TCGA-BR-4292-01 17 33586176 33586176 A C SLFN5 Missense_Mutation p.Q156P 0.29 tolerated(0.48) benign(0.006) TCGA-BR-4292-01 17 3431412 3431412 C T TRPV3 Silent p.P470P 0.31 TCGA-BR-4292-01 17 34324855 34324855 C A CCL15 Missense_Mutation p.S97I 0.27 tolerated(0.35) possibly_damaging(0.707) TCGA-BR-4292-01 17 35902366 35902366 C T SYNRG Silent p.T970T 0.28 TCGA-BR-4292-01 17 36359005 36359005 T C RP11-1407O15.2 Missense_Mutation p.N229S 0.11 TCGA-BR-4292-01 17 36997563 36997563 C T C17orf98 Missense_Mutation p.R27H 0.38 tolerated(0.05) benign(0.017) TCGA-BR-4292-01 17 3786397 3786397 A G CAMKK1 Missense_Mutation p.V196A 0.39 deleterious(0.02) possibly_damaging(0.88) TCGA-BR-4292-01 17 38253490 38253490 G A NR1D1 Silent p.R66R 0.09 TCGA-BR-4292-01 17 38936090 38936090 C A KRT27 Silent p.A236A 0.30 TCGA-BR-4292-01 17 39021080 39021080 T C KRT12 Missense_Mutation p.Y262C 0.31 deleterious(0.02) probably_damaging(0.99) TCGA-BR-4292-01 17 3926101 3926101 G A ZZEF1 Missense_Mutation p.R2372C 0.29 deleterious(0) benign(0.339) TCGA-BR-4292-01 17 39340921 39340921 G - KRTAP4-1 Frame_Shift_Del p.S63Afs*126 0.11 TCGA-BR-4292-01 17 39776936 39776936 G A KRT17 Missense_Mutation p.R386C 0.34 deleterious(0.03) benign(0.117) TCGA-BR-4292-01 17 40695811 40695811 G A NAGLU Missense_Mutation p.G596D 0.25 tolerated(0.09) probably_damaging(0.952) TCGA-BR-4292-01 17 40706500 40706500 A C HSD17B1 Missense_Mutation p.D206A 0.35 tolerated(0.21) benign(0.001) TCGA-BR-4292-01 17 4071062 4071063 - G ANKFY1 3'UTR 0.30 TCGA-BR-4292-01 17 40725006 40725006 C T PSMC3IP Missense_Mutation p.V212I 0.36 tolerated(0.05) benign(0.067) TCGA-BR-4292-01 17 41003976 41003976 C T AOC3 Missense_Mutation p.R206W 0.36 deleterious(0.02) benign(0.321) TCGA-BR-4292-01 17 41297124 41297124 A - NBR2 3'Flank 0.48 TCGA-BR-4292-01 17 41959741 41959741 G - MPP2 Frame_Shift_Del p.R198Afs*33 0.30 TCGA-BR-4292-01 17 41959879 41959879 C A MPP2 Missense_Mutation p.G152C 0.40 deleterious(0) probably_damaging(1) TCGA-BR-4292-01 17 41975706 41975706 G A MPP2 Missense_Mutation p.A25V 0.40 tolerated(0.22) benign(0.174) TCGA-BR-4292-01 17 42170162 42170162 A G HDAC5 Silent p.H219H 0.64 TCGA-BR-4292-01 17 42475277 42475277 C T GPATCH8 Missense_Mutation p.A1390T 0.44 deleterious(0.01) unknown(0) TCGA-BR-4292-01 17 43531023 43531023 C T PLEKHM1 Missense_Mutation p.R732Q 0.29 tolerated(0.28) benign(0.068) TCGA-BR-4292-01 17 4448573 4448573 C T MYBBP1A Missense_Mutation p.R714Q 0.35 tolerated(0.14) benign(0.001) TCGA-BR-4292-01 17 4539247 4539247 G - ALOX15 Frame_Shift_Del p.T323Kfs*40 0.28 TCGA-BR-4292-01 17 46136768 46136768 G A NFE2L1 Missense_Mutation p.R695Q 0.40 tolerated(0.07) benign(0.041) TCGA-BR-4292-01 17 46805700 46805700 C T HOXB13 Missense_Mutation p.G86R 0.34 deleterious(0.01) probably_damaging(1) TCGA-BR-4292-01 17 47583941 47583941 G A NGFR Silent p.P163P 0.52 TCGA-BR-4292-01 17 47869286 47869286 C T KAT7 Silent p.S18S 0.35 TCGA-BR-4292-01 17 48166496 48166496 G A ITGA3 Missense_Mutation p.R1023H 0.35 tolerated(0.17) benign(0.005) TCGA-BR-4292-01 17 48668860 48668860 C T CACNA1G Missense_Mutation p.R840C 0.26 deleterious(0) probably_damaging(1) TCGA-BR-4292-01 17 5041042 5041042 C T USP6 Nonsense_Mutation p.Q308* 0.30 TCGA-BR-4292-01 17 56435355 56435357 AGG - RNF43 In_Frame_Del p.P594del 0.49 TCGA-BR-4292-01 17 56590291 56590291 C - MTMR4 Frame_Shift_Del p.S8Afs*16 0.41 TCGA-BR-4292-01 17 57351092 57351092 T A GDPD1 Nonsense_Mutation p.Y301* 0.29 TCGA-BR-4292-01 17 57917177 57917178 GT - VMP1 Frame_Shift_Del p.C377Lfs*8 0.21 TCGA-BR-4292-01 17 58256518 58256518 T C USP32 3'UTR 0.31 TCGA-BR-4292-01 17 61615460 61615460 C T KCNH6 Silent p.S512S 0.40 TCGA-BR-4292-01 17 61685281 61685281 C T TACO1 Silent p.P271P 0.25 TCGA-BR-4292-01 17 61897300 61897300 T A FTSJ3 Silent p.V802V 0.32 TCGA-BR-4292-01 17 62492629 62492630 AG - POLG2 Frame_Shift_Del p.L153Tfs*11 0.28 TCGA-BR-4292-01 17 62527046 62527046 G A CEP95 Silent p.A483A 0.56 TCGA-BR-4292-01 17 65020985 65020985 G A CACNG4 Missense_Mutation p.R105Q 0.37 deleterious(0) probably_damaging(0.99) TCGA-BR-4292-01 17 65027085 65027085 G A CACNG4 Missense_Mutation p.V317I 0.40 tolerated(0.43) benign(0.002) TCGA-BR-4292-01 17 6544520 6544520 A - TXNDC17 Frame_Shift_Del p.S41Afs*17 0.34 TCGA-BR-4292-01 17 66391298 66391298 C T ARSG Silent p.S392S 0.10 TCGA-BR-4292-01 17 6978516 6978516 C T CLEC10A Missense_Mutation p.D270N 0.39 tolerated(0.54) benign(0.128) TCGA-BR-4292-01 17 7106649 7106649 C T DLG4 Splice_Site p.X212_splice 0.40 TCGA-BR-4292-01 17 71281490 71281490 G A CDC42EP4 3'UTR 0.21 TCGA-BR-4292-01 17 72310373 72310373 C T DNAI2 3'UTR 0.35 TCGA-BR-4292-01 17 72613483 72613483 G A CD300E Silent p.Y54Y 0.30 TCGA-BR-4292-01 17 72832455 72832455 G A TMEM104 Missense_Mutation p.V374M 0.38 deleterious(0) probably_damaging(0.99) TCGA-BR-4292-01 17 73239539 73239539 A G GGA3 Missense_Mutation p.L138P 0.33 deleterious(0) probably_damaging(1) TCGA-BR-4292-01 17 74005351 74005351 G A EVPL Missense_Mutation p.T1312M 0.30 tolerated(0.19) benign(0.034) TCGA-BR-4292-01 17 74005498 74005498 C T EVPL Missense_Mutation p.S1263N 0.33 tolerated(0.12) benign(0.008) TCGA-BR-4292-01 17 74077354 74077354 C A ZACN Intron 0.29 TCGA-BR-4292-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.17 deleterious(0) probably_damaging(0.998) TCGA-BR-4292-01 17 76497988 76497988 C T DNAH17-AS1 3'UTR 0.20 TCGA-BR-4292-01 17 78023975 78023975 G A CCDC40 Missense_Mutation p.R351H 0.43 tolerated(0.08) benign(0.015) TCGA-BR-4292-01 17 7810789 7810789 G T CHD3 Missense_Mutation p.G1695V 0.15 probably_damaging(0.953) TCGA-BR-4292-01 17 78313974 78313974 A G RNF213 Missense_Mutation p.H1936R 0.21 benign(0.222) TCGA-BR-4292-01 17 79077502 79077502 C T BAIAP2 Silent p.P281P 0.30 TCGA-BR-4292-01 17 79163474 79163475 - G AZI1 3'UTR 0.32 TCGA-BR-4292-01 17 7978911 7978911 A G ALOX12B Splice_Site p.X552_splice 0.30 TCGA-BR-4292-01 17 80400207 80400208 - C HEXDC Frame_Shift_Ins p.R502Pfs*16 0.32 TCGA-BR-4292-01 17 80521332 80521332 C T FOXK2 Silent p.A174A 0.22 TCGA-BR-4292-01 17 80708606 80708606 G A FN3K Missense_Mutation p.G302D 0.42 tolerated(0.2) benign(0.027) TCGA-BR-4292-01 17 8077689 8077689 G - TMEM107 Intron 0.21 TCGA-BR-4292-01 17 8077915 8077915 A G TMEM107 Silent p.S98S 0.35 TCGA-BR-4292-01 17 8393780 8393780 C T MYH10 Missense_Mutation p.A1588T 0.28 possibly_damaging(0.584) TCGA-BR-4292-01 17 9515631 9515631 T A WDR16 Missense_Mutation p.I287N 0.35 tolerated(0.07) benign(0.006) TCGA-BR-4292-01 18 10532792 10532792 C T NAPG Missense_Mutation p.A70V 0.40 tolerated(0.09) benign(0.07) TCGA-BR-4292-01 18 12028085 12028085 T C IMPA2 Silent p.R178R 0.08 TCGA-BR-4292-01 18 19024325 19024325 G A GREB1L Missense_Mutation p.V450M 0.17 tolerated(0.08) benign(0.134) TCGA-BR-4292-01 18 19203788 19203788 G A SNRPD1 Silent p.T57T 0.37 TCGA-BR-4292-01 18 24524315 24524316 - T CHST9 Frame_Shift_Ins p.I73Nfs*16 0.32 TCGA-BR-4292-01 18 31323629 31323629 A G ASXL3 Missense_Mutation p.T1273A 0.25 benign(0.294) TCGA-BR-4292-01 18 31325578 31325578 C T ASXL3 Silent p.D1922D 0.40 TCGA-BR-4292-01 18 34205516 34205516 C - FHOD3 Frame_Shift_Del p.S336Vfs*138 0.35 TCGA-BR-4292-01 18 3879216 3879216 C T DLGAP1 Missense_Mutation p.V285M 0.39 tolerated(0.07) probably_damaging(0.982) TCGA-BR-4292-01 18 43446902 43446902 T C EPG5 Missense_Mutation p.Y2161C 0.34 deleterious(0) probably_damaging(0.993) TCGA-BR-4292-01 18 44336460 44336460 C T ST8SIA5 Silent p.A4A 0.18 TCGA-BR-4292-01 18 45566518 45566519 - C ZBTB7C Frame_Shift_Ins p.P321Afs*141 0.30 TCGA-BR-4292-01 18 51820306 51820306 C A POLI Silent p.A564A 0.41 TCGA-BR-4292-01 18 54339760 54339760 G T WDR7 Missense_Mutation p.S5I 0.39 deleterious(0) possibly_damaging(0.766) TCGA-BR-4292-01 18 54358513 54358513 G T WDR7 Missense_Mutation p.G262W 0.30 deleterious(0) probably_damaging(1) TCGA-BR-4292-01 18 54424292 54424292 G A WDR7 Missense_Mutation p.R823H 0.13 deleterious(0) probably_damaging(0.991) TCGA-BR-4292-01 18 54424475 54424475 G A WDR7 Missense_Mutation p.R884H 0.12 deleterious(0.03) possibly_damaging(0.79) TCGA-BR-4292-01 18 55104001 55104001 C - ONECUT2 Frame_Shift_Del p.Q353Rfs*123 0.34 TCGA-BR-4292-01 18 55371796 55371798 AAG - ATP8B1 In_Frame_Del p.L128del 0.33 TCGA-BR-4292-01 18 56246941 56246941 A - ALPK2 Frame_Shift_Del p.L356Yfs*2 0.31 TCGA-BR-4292-01 18 56278998 56278998 G - ALPK2 Frame_Shift_Del p.P11Rfs*24 0.26 TCGA-BR-4292-01 18 59221656 59221656 G A CDH20 Missense_Mutation p.V712M 0.22 tolerated(0.22) probably_damaging(0.999) TCGA-BR-4292-01 18 59483442 59483442 G A RNF152 Silent p.S85S 0.38 TCGA-BR-4292-01 18 60645690 60645690 G A PHLPP1 Missense_Mutation p.D1394N 0.47 tolerated(0.21) probably_damaging(0.992) TCGA-BR-4292-01 18 64172527 64172527 A - CDH19 Frame_Shift_Del p.L614* 0.21 TCGA-BR-4292-01 18 72999537 72999537 C T TSHZ1 Silent p.N680N 0.29 TCGA-BR-4292-01 18 8784105 8784105 C - SOGA2 Frame_Shift_Del p.L334Cfs*5 0.22 TCGA-BR-4292-01 18 9887885 9887885 T C TXNDC2 Missense_Mutation p.L470P 0.40 deleterious(0) probably_damaging(1) TCGA-BR-4292-01 19 10794694 10794694 A G ILF3 Intron 0.35 TCGA-BR-4292-01 19 10943787 10943787 A C DNM2 3'Flank 0.29 TCGA-BR-4292-01 19 11591443 11591443 G A ELAVL3 5'UTR 0.33 TCGA-BR-4292-01 19 11942182 11942182 G A ZNF440 Splice_Site p.X64_splice 0.30 TCGA-BR-4292-01 19 12574828 12574828 T A ZNF709 Missense_Mutation p.R636S 0.33 deleterious(0.02) benign(0.006) TCGA-BR-4292-01 19 12691279 12691279 C T ZNF490 3'UTR 0.32 TCGA-BR-4292-01 19 12740044 12740044 A - ZNF791 Frame_Shift_Del p.K569Nfs*3 0.31 TCGA-BR-4292-01 19 12963047 12963047 G A MAST1 Missense_Mutation p.R332H 0.29 deleterious(0) probably_damaging(0.994) TCGA-BR-4292-01 19 13223783 13223783 G A TRMT1 Silent p.D228D 0.10 TCGA-BR-4292-01 19 1428885 1428885 G A DAZAP1 Silent p.A197A 0.32 TCGA-BR-4292-01 19 15198125 15198125 G A OR1I1 Silent p.A83A 0.34 TCGA-BR-4292-01 19 15806782 15806782 C T CYP4F12 Silent p.C384C 0.40 TCGA-BR-4292-01 19 16535966 16535966 C T EPS15L1 Silent p.P240P 0.35 TCGA-BR-4292-01 19 16918583 16918583 G A NWD1 Missense_Mutation p.S1308N 0.27 tolerated(0.21) possibly_damaging(0.781) TCGA-BR-4292-01 19 17893892 17893892 C T FCHO1 Silent p.S668S 0.10 TCGA-BR-4292-01 19 18420588 18420588 G A LSM4 Silent p.I76I 0.16 TCGA-BR-4292-01 19 18990098 18990100 GAA - CERS1 In_Frame_Del p.F284del 0.23 TCGA-BR-4292-01 19 19240983 19240983 C T TMEM161A Missense_Mutation p.E193K 0.14 deleterious(0.04) probably_damaging(0.978) TCGA-BR-4292-01 19 1925544 1925544 C T SCAMP4 3'UTR 0.36 TCGA-BR-4292-01 19 19338308 19338309 - C NCAN Frame_Shift_Ins p.D629Rfs*28 0.21 TCGA-BR-4292-01 19 19391027 19391027 G A SUGP1 Silent p.D439D 0.36 TCGA-BR-4292-01 19 2076887 2076887 C T MOB3A Missense_Mutation p.V183M 0.32 deleterious(0.04) probably_damaging(0.977) TCGA-BR-4292-01 19 2191141 2191141 C - DOT1L Frame_Shift_Del p.E134Rfs*14 0.26 TCGA-BR-4292-01 19 22154680 22154680 A C ZNF208 Silent p.A1052A 0.31 TCGA-BR-4292-01 19 22363176 22363176 G C ZNF676 Missense_Mutation p.P448R 0.23 deleterious(0) possibly_damaging(0.718) TCGA-BR-4292-01 19 31769550 31769550 C T TSHZ3 Silent p.S383S 0.30 TCGA-BR-4292-01 19 33482843 33482843 C T RHPN2 Silent p.R510R 0.11 TCGA-BR-4292-01 19 33968960 33968960 G A PEPD Silent p.I180I 0.23 TCGA-BR-4292-01 19 34890536 34890536 G A GPI Missense_Mutation p.A503T 0.29 deleterious_low_confidence(0) probably_damaging(0.916) TCGA-BR-4292-01 19 35514240 35514240 G A GRAMD1A Missense_Mutation p.A652T 0.28 tolerated(0.36) benign(0.026) TCGA-BR-4292-01 19 35761690 35761690 G A USF2 Missense_Mutation p.R217Q 0.19 deleterious(0.04) benign(0.36) TCGA-BR-4292-01 19 35828791 35828791 C A CD22 Silent p.T284T 0.26 TCGA-BR-4292-01 19 3612132 3612132 C T CACTIN Missense_Mutation p.R689H 0.37 tolerated(0.09) benign(0.369) TCGA-BR-4292-01 19 36223276 36223276 C A KMT2B Silent p.P1942P 0.37 TCGA-BR-4292-01 19 36387021 36387021 G A NFKBID Missense_Mutation p.P156L 0.26 deleterious(0) possibly_damaging(0.834) TCGA-BR-4292-01 19 3641788 3641788 C T PIP5K1C Missense_Mutation p.A568T 0.38 tolerated_low_confidence(0.31) benign(0.029) TCGA-BR-4292-01 19 36508304 36508304 T - CLIP3 Frame_Shift_Del p.V501Cfs*4 0.38 TCGA-BR-4292-01 19 36508783 36508783 C T CLIP3 Missense_Mutation p.V432M 0.36 deleterious(0.02) possibly_damaging(0.872) TCGA-BR-4292-01 19 3653507 3653507 G A PIP5K1C Silent p.R234R 0.33 TCGA-BR-4292-01 19 3736172 3736172 C T TJP3 Silent p.P388P 0.25 TCGA-BR-4292-01 19 37441545 37441545 C T ZNF568 Missense_Mutation p.T497M 0.34 deleterious(0.02) probably_damaging(0.971) TCGA-BR-4292-01 19 37618976 37618976 A C ZNF420 Missense_Mutation p.K361N 0.25 deleterious(0.01) possibly_damaging(0.461) TCGA-BR-4292-01 19 37879380 37879380 G A ZNF527 Silent p.A143A 0.19 TCGA-BR-4292-01 19 38028415 38028415 T - ZNF793 Frame_Shift_Del p.C288Vfs*113 0.34 TCGA-BR-4292-01 19 38102620 38102620 A - ZNF540 Frame_Shift_Del p.M149Cfs*12 0.29 TCGA-BR-4292-01 19 3831668 3831668 G A ZFR2 Silent p.T196T 0.50 TCGA-BR-4292-01 19 38798088 38798088 C T YIF1B Missense_Mutation p.V257I 0.33 tolerated(0.93) benign(0.005) TCGA-BR-4292-01 19 38873894 38873894 G A PSMD8 Missense_Mutation p.R306Q 0.30 deleterious(0) probably_damaging(0.99) TCGA-BR-4292-01 19 39068584 39068584 C T RYR1 Silent p.Y4733Y 0.41 TCGA-BR-4292-01 19 39913533 39913533 C T PLEKHG2 Silent p.H613H 0.39 TCGA-BR-4292-01 19 40480653 40480654 - C PSMC4 Frame_Shift_Ins p.R200Pfs*43 0.28 TCGA-BR-4292-01 19 40485741 40485741 G A PSMC4 Missense_Mutation p.V231M 0.31 deleterious(0) probably_damaging(0.996) TCGA-BR-4292-01 19 40747883 40747883 C T AKT2 Missense_Mutation p.A179T 0.27 deleterious(0.02) probably_damaging(1) TCGA-BR-4292-01 19 40834366 40834366 C T C19orf47 Silent p.S168S 0.15 TCGA-BR-4292-01 19 41083179 41083181 CTT - SHKBP1 In_Frame_Del p.F45del 0.33 TCGA-BR-4292-01 19 41135394 41135394 G A LTBP4 Missense_Mutation p.R1604H 0.50 tolerated(0.39) possibly_damaging(0.817) TCGA-BR-4292-01 19 41631460 41631460 C T CYP2F1 Silent p.P405P 0.22 TCGA-BR-4292-01 19 41810070 41810070 C - HNRNPUL1 Frame_Shift_Del p.P724Qfs*191 0.12 TCGA-BR-4292-01 19 41822537 41822537 C T CCDC97 Silent p.L99L 0.38 TCGA-BR-4292-01 19 41828552 41828554 GAG - CCDC97 In_Frame_Del p.E324del 0.47 TCGA-BR-4292-01 19 42583781 42583781 C T ZNF574 Silent p.C341C 0.29 TCGA-BR-4292-01 19 42752741 42752741 C A ERF Missense_Mutation p.G508V 0.38 deleterious_low_confidence(0.01) benign(0.001) TCGA-BR-4292-01 19 43680089 43680089 G T PSG5 Silent p.P214P 0.35 TCGA-BR-4292-01 19 44048331 44048331 C T XRCC1 Silent p.R559R 0.30 TCGA-BR-4292-01 19 44131398 44131398 C T CADM4 Missense_Mutation p.R95H 0.41 deleterious(0.01) possibly_damaging(0.841) TCGA-BR-4292-01 19 44223276 44223276 C T IRGC Missense_Mutation p.A189V 0.33 tolerated(0.28) benign(0.002) TCGA-BR-4292-01 19 44676240 44676240 G T ZNF226 Splice_Site p.X6_splice 0.30 TCGA-BR-4292-01 19 4512339 4512339 C T PLIN4 Missense_Mutation p.V531M 0.35 tolerated(0.45) benign(0.206) TCGA-BR-4292-01 19 45490450 45490450 C T CLPTM1 Silent p.D269D 0.29 TCGA-BR-4292-01 19 4550844 4550844 G A SEMA6B Missense_Mutation p.T363M 0.43 deleterious(0) probably_damaging(0.954) TCGA-BR-4292-01 19 4554436 4554436 G T SEMA6B Missense_Mutation p.F245L 0.29 tolerated(0.1) probably_damaging(0.967) TCGA-BR-4292-01 19 45855905 45855905 C T ERCC2 Silent p.A635A 0.39 TCGA-BR-4292-01 19 46376101 46376101 A G FOXA3 Missense_Mutation p.T280A 0.34 tolerated(0.71) benign(0) TCGA-BR-4292-01 19 46543646 46543646 C T IGFL4 Silent p.A33A 0.21 TCGA-BR-4292-01 19 46973945 46973945 G A PNMAL1 Silent p.A116A 0.23 TCGA-BR-4292-01 19 47124644 47124644 A G PTGIR Missense_Mutation p.W352R 0.26 tolerated_low_confidence(0.05) possibly_damaging(0.627) TCGA-BR-4292-01 19 47422067 47422067 G A ARHGAP35 Silent p.P45P 0.26 TCGA-BR-4292-01 19 4793748 4793749 - G FEM1A Frame_Shift_Ins p.T630Yfs*20 0.24 TCGA-BR-4292-01 19 4817760 4817760 G A TICAM1 Silent p.S210S 0.45 TCGA-BR-4292-01 19 4859941 4859941 C T PLIN3 Silent p.P54P 0.18 TCGA-BR-4292-01 19 49107038 49107038 G - FAM83E Frame_Shift_Del p.Q297Rfs*6 0.35 TCGA-BR-4292-01 19 49362226 49362226 C T PLEKHA4 Missense_Mutation p.R288H 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-BR-4292-01 19 49368837 49368837 C T PLEKHA4 Missense_Mutation p.A39T 0.27 tolerated(0.69) benign(0.063) TCGA-BR-4292-01 19 49510397 49510397 C T RUVBL2 Missense_Mutation p.R130C 0.33 deleterious(0) probably_damaging(0.991) TCGA-BR-4292-01 19 4954817 4954817 C T UHRF1 RNA 0.36 TCGA-BR-4292-01 19 49573446 49573446 A G KCNA7 Silent p.H415H 0.28 TCGA-BR-4292-01 19 50189896 50189896 G A PRMT1 Silent p.T315T 0.34 TCGA-BR-4292-01 19 50542512 50542512 C T ZNF473 Missense_Mutation p.A35V 0.22 tolerated(0.21) probably_damaging(0.923) TCGA-BR-4292-01 19 50545072 50545072 C T ZNF473 Silent p.S74S 0.25 TCGA-BR-4292-01 19 51021607 51021607 C G LRRC4B Missense_Mutation p.A455P 0.48 deleterious(0.01) possibly_damaging(0.899) TCGA-BR-4292-01 19 51274765 51274765 C T GPR32 Missense_Mutation p.A303V 0.29 deleterious(0) benign(0.324) TCGA-BR-4292-01 19 5222821 5222821 C T PTPRS Silent p.A994A 0.43 TCGA-BR-4292-01 19 53208122 53208122 A G ZNF611 3'UTR 0.37 TCGA-BR-4292-01 19 53343967 53343967 T G ZNF468 3'UTR 0.34 TCGA-BR-4292-01 19 53950474 53950474 C T ZNF761 RNA 0.29 TCGA-BR-4292-01 19 54682578 54682578 C T MBOAT7 Missense_Mutation p.R312Q 0.42 tolerated(0.19) benign(0.09) TCGA-BR-4292-01 19 54720983 54720983 G A LILRB3 Silent p.Y626Y 0.32 TCGA-BR-4292-01 19 54822823 54822823 G - LILRA5 Frame_Shift_Del p.S192Vfs*13 0.27 TCGA-BR-4292-01 19 55249982 55249982 C T KIR2DL3 5'UTR 0.32 TCGA-BR-4292-01 19 55420752 55420752 C T NCR1 Silent p.Y168Y 0.30 TCGA-BR-4292-01 19 55494974 55494974 C T NLRP2 Silent p.D636D 0.39 TCGA-BR-4292-01 19 55815036 55815036 C - BRSK1 Frame_Shift_Del p.R379Gfs*9 0.35 TCGA-BR-4292-01 19 56243922 56243922 G A NLRP9 Silent p.G425G 0.28 TCGA-BR-4292-01 19 57333110 57333110 C T PEG3 Missense_Mutation p.R193Q 0.28 tolerated(0.15) benign(0.05) TCGA-BR-4292-01 19 57839932 57839932 G A ZNF543 Missense_Mutation p.E368K 0.33 tolerated(0.21) probably_damaging(0.938) TCGA-BR-4292-01 19 57931842 57931842 C T ZNF17 Missense_Mutation p.R328W 0.42 deleterious(0) probably_damaging(0.925) TCGA-BR-4292-01 19 58048866 58048866 G T ZNF549 Missense_Mutation p.S165I 0.34 deleterious(0.01) benign(0.094) TCGA-BR-4292-01 19 58083691 58083691 G A ZNF416 Silent p.C527C 0.32 TCGA-BR-4292-01 19 58980596 58980596 G - ZNF324 Frame_Shift_Del p.L17Sfs*13 0.27 TCGA-BR-4292-01 19 59011792 59011792 A G SLC27A5 Missense_Mutation p.L461P 0.24 deleterious(0.03) possibly_damaging(0.663) TCGA-BR-4292-01 19 613971 613971 C T HCN2 Missense_Mutation p.R649W 0.37 deleterious(0) possibly_damaging(0.632) TCGA-BR-4292-01 19 7122772 7122772 G A INSR Missense_Mutation p.R1128C 0.44 tolerated(0.18) probably_damaging(0.936) TCGA-BR-4292-01 19 7585781 7585781 C T ZNF358 Silent p.G551G 0.38 TCGA-BR-4292-01 19 7682715 7682715 G A CAMSAP3 Silent p.T1201T 0.61 TCGA-BR-4292-01 19 7696566 7696566 C A PCP2 3'UTR 0.67 TCGA-BR-4292-01 19 7975196 7975196 G A MAP2K7 Missense_Mutation p.G129S 0.32 deleterious(0) probably_damaging(1) TCGA-BR-4292-01 19 7975348 7975348 G A MAP2K7 Missense_Mutation p.R153H 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-BR-4292-01 19 7976201 7976201 C A MAP2K7 Missense_Mutation p.L308M 0.36 deleterious(0) possibly_damaging(0.903) TCGA-BR-4292-01 19 804843 804843 C T PTBP1 Silent p.F207F 0.28 TCGA-BR-4292-01 19 8176641 8176641 G A FBN3 Silent p.C1325C 0.23 TCGA-BR-4292-01 19 8533719 8533719 G A HNRNPM Splice_Site p.X299_splice 0.24 TCGA-BR-4292-01 19 9069699 9069699 T C MUC16 Missense_Mutation p.Q5916R 0.31 unknown(0) TCGA-BR-4292-01 19 9578164 9578164 G A ZNF560 Missense_Mutation p.R487C 0.29 deleterious(0) benign(0.019) TCGA-BR-4292-01 19 9639888 9639888 T - ZNF426 Frame_Shift_Del p.K278Sfs*106 0.27 TCGA-BR-4292-01 19 9922291 9922291 G - FBXL12 Frame_Shift_Del p.Q88Sfs*7 0.30 TCGA-BR-4292-01 1 10042553 10042553 G A NMNAT1 Missense_Mutation p.V212M 0.32 deleterious(0.01) benign(0.44) TCGA-BR-4292-01 1 100534122 100534123 TT - HIAT1 Frame_Shift_Del p.L269Ifs*42 0.32 TCGA-BR-4292-01 1 10706296 10706296 C T CASZ1 Silent p.T1195T 0.31 TCGA-BR-4292-01 1 109560141 109560141 T - WDR47 Frame_Shift_Del p.R81Gfs*7 0.42 TCGA-BR-4292-01 1 110564356 110564356 T - AHCYL1 3'UTR 0.27 TCGA-BR-4292-01 1 111146149 111146149 C T KCNA2 Missense_Mutation p.R419Q 0.31 tolerated(0.06) probably_damaging(0.925) TCGA-BR-4292-01 1 11168277 11168277 G A MTOR Missense_Mutation p.A2532V 0.28 deleterious(0) probably_damaging(0.985) TCGA-BR-4292-01 1 113033683 113033683 G A WNT2B Silent p.A35A 0.26 TCGA-BR-4292-01 1 116609275 116609275 G A SLC22A15 Silent p.S500S 0.19 TCGA-BR-4292-01 1 117146451 117146451 C T IGSF3 Silent p.S493S 0.41 TCGA-BR-4292-01 1 117661189 117661189 A G TRIM45 Missense_Mutation p.V230A 0.13 tolerated(0.21) benign(0.012) TCGA-BR-4292-01 1 118634309 118634309 T C SPAG17 Missense_Mutation p.R427G 0.30 deleterious(0) probably_damaging(0.998) TCGA-BR-4292-01 1 118642346 118642346 C T SPAG17 Missense_Mutation p.A238T 0.38 tolerated(1) benign(0.001) TCGA-BR-4292-01 1 120437609 120437609 G A ADAM30 Missense_Mutation p.R451C 0.24 tolerated(0.07) benign(0.189) TCGA-BR-4292-01 1 12888457 12888457 G A PRAMEF11 Missense_Mutation p.R23C 0.15 tolerated(0.2) benign(0.014) TCGA-BR-4292-01 1 14107246 14107246 C - PRDM2 Frame_Shift_Del p.P987Lfs*54 0.41 TCGA-BR-4292-01 1 14107892 14107893 - T PRDM2 Frame_Shift_Ins p.L1203Ffs*15 0.29 TCGA-BR-4292-01 1 143767446 143767446 G A PPIAL4G Missense_Mutation p.R135C 0.08 deleterious_low_confidence(0) possibly_damaging(0.505) TCGA-BR-4292-01 1 144952189 144952189 G A PDE4DIP Intron 0.08 TCGA-BR-4292-01 1 145608566 145608566 G A POLR3C Missense_Mutation p.R81W 0.25 deleterious(0) possibly_damaging(0.646) TCGA-BR-4292-01 1 150131249 150131249 C - PLEKHO1 Frame_Shift_Del p.Q256Rfs*6 0.27 TCGA-BR-4292-01 1 150445908 150445908 T - RPRD2 3'UTR 0.52 TCGA-BR-4292-01 1 151149142 151149142 C T VPS72 Missense_Mutation p.R369H 0.47 deleterious_low_confidence(0) possibly_damaging(0.715) TCGA-BR-4292-01 1 151261166 151261166 C T ZNF687 Missense_Mutation p.R760C 0.55 deleterious(0) possibly_damaging(0.849) TCGA-BR-4292-01 1 152275642 152275642 C T FLG Missense_Mutation p.R3907H 0.26 unknown(0) TCGA-BR-4292-01 1 152283084 152283084 G A FLG Silent p.S1426S 0.48 TCGA-BR-4292-01 1 152284397 152284397 G A FLG Missense_Mutation p.H989Y 0.03 possibly_damaging(0.767) TCGA-BR-4292-01 1 152284999 152284999 C T FLG Missense_Mutation p.R788Q 0.30 possibly_damaging(0.685) TCGA-BR-4292-01 1 152648744 152648744 C T LCE2C Missense_Mutation p.R85W 0.55 tolerated_low_confidence(0.09) unknown(0) TCGA-BR-4292-01 1 153749150 153749150 C - SLC27A3 Frame_Shift_Del p.Q324Rfs*3 0.41 TCGA-BR-4292-01 1 15392332 15392332 G - KAZN Intron 0.41 TCGA-BR-4292-01 1 153934780 153934781 - C SLC39A1 Frame_Shift_Ins p.V79Rfs*13 0.27 TCGA-BR-4292-01 1 153941173 153941174 TG - CREB3L4 Frame_Shift_Del 0.28 TCGA-BR-4292-01 1 154229634 154229634 T A UBAP2L Missense_Mutation p.S751R 0.06 deleterious(0) unknown(0) TCGA-BR-4292-01 1 15428216 15428216 G T KAZN Missense_Mutation p.Q575H 0.38 deleterious(0) probably_damaging(0.995) TCGA-BR-4292-01 1 154557387 154557387 G A ADAR Silent p.Y1192Y 0.61 TCGA-BR-4292-01 1 155252423 155252423 G A HCN3 Missense_Mutation p.R167H 0.37 tolerated(0.34) benign(0.061) TCGA-BR-4292-01 1 155911480 155911480 A G RXFP4 5'UTR 0.10 TCGA-BR-4292-01 1 156108451 156108451 G A LMNA Missense_Mutation p.R624H 0.48 tolerated_low_confidence(0.05) benign(0.005) TCGA-BR-4292-01 1 156303398 156303398 C T CCT3 Missense_Mutation p.E82K 0.24 deleterious(0.02) probably_damaging(0.923) TCGA-BR-4292-01 1 156642804 156642804 G - NES Frame_Shift_Del p.T393Hfs*9 0.45 TCGA-BR-4292-01 1 156883740 156883740 G C PEAR1 Missense_Mutation p.G937A 0.28 tolerated(0.75) benign(0.02) TCGA-BR-4292-01 1 158368816 158368816 A C OR10T2 Silent p.S147S 0.53 TCGA-BR-4292-01 1 159799702 159799702 C T SLAMF8 Silent p.V29V 0.11 TCGA-BR-4292-01 1 15987413 15987413 G A RSC1A1 Silent p.P350P 0.28 TCGA-BR-4292-01 1 161654742 161654742 C T RPL31P11 RNA 0.44 TCGA-BR-4292-01 1 162762614 162762614 G A HSD17B7 Silent p.L67L 0.51 TCGA-BR-4292-01 1 164815933 164815933 C T PBX1 3'UTR 0.23 TCGA-BR-4292-01 1 16525645 16525645 C T ARHGEF19 Missense_Mutation p.G751S 0.33 deleterious(0) probably_damaging(0.979) TCGA-BR-4292-01 1 166890564 166890564 C - ILDR2 Frame_Shift_Del p.V422Cfs*67 0.54 TCGA-BR-4292-01 1 16785456 16785456 G A NECAP2 Missense_Mutation p.E263K 0.38 deleterious_low_confidence(0) benign(0.046) TCGA-BR-4292-01 1 167863165 167863166 - AA ADCY10 Frame_Shift_Ins p.A252Lfs*5 0.30 TCGA-BR-4292-01 1 167870995 167870995 T - ADCY10 Frame_Shift_Del p.N114Tfs*6 0.24 TCGA-BR-4292-01 1 16901132 16901132 C T NBPF1 Missense_Mutation p.A750T 0.11 tolerated(0.07) probably_damaging(0.978) TCGA-BR-4292-01 1 169100579 169100579 G A ATP1B1 Missense_Mutation p.G233D 0.07 deleterious(0.01) benign(0.024) TCGA-BR-4292-01 1 173912741 173912741 T G RC3H1 Silent p.R992R 0.40 TCGA-BR-4292-01 1 173953746 173953746 C T RC3H1 Silent p.Q81Q 0.29 TCGA-BR-4292-01 1 17431556 17431556 G A PADI2 Silent p.S31S 0.47 TCGA-BR-4292-01 1 180775653 180775653 C A XPR1 Missense_Mutation p.A214D 0.29 deleterious(0) probably_damaging(0.998) TCGA-BR-4292-01 1 182026636 182026636 A G ZNF648 Silent p.N170N 0.40 TCGA-BR-4292-01 1 183387445 183387445 T - NMNAT2 5'UTR 0.29 TCGA-BR-4292-01 1 184446574 184446574 A - C1orf21 5'UTR 0.67 TCGA-BR-4292-01 1 184446659 184446659 G A C1orf21 Missense_Mutation p.A6T 0.41 tolerated(0.1) benign(0.112) TCGA-BR-4292-01 1 186313658 186313658 T C TPR Missense_Mutation p.H1089R 0.11 possibly_damaging(0.537) TCGA-BR-4292-01 1 186645044 186645044 G A PTGS2 Nonsense_Mutation p.Q415* 0.28 TCGA-BR-4292-01 1 190067106 190067106 A - BRINP3 3'UTR 0.31 TCGA-BR-4292-01 1 190067583 190067583 A - BRINP3 Frame_Shift_Del p.F622Lfs*8 0.30 TCGA-BR-4292-01 1 19062344 19062344 C T PAX7 Silent p.A458A 0.38 TCGA-BR-4292-01 1 192780201 192780201 C A RGS2 Missense_Mutation p.T122N 0.28 deleterious(0.02) probably_damaging(0.947) TCGA-BR-4292-01 1 193149443 193149443 C T B3GALT2 Missense_Mutation p.R417H 0.25 tolerated_low_confidence(0.12) benign(0.299) TCGA-BR-4292-01 1 19585399 19585399 G A MRTO4 3'UTR 0.22 TCGA-BR-4292-01 1 197031010 197031010 C T F13B Missense_Mutation p.A119T 0.40 tolerated(0.74) benign(0.021) TCGA-BR-4292-01 1 200974489 200974489 C T KIF21B Missense_Mutation p.A227T 0.31 deleterious(0) probably_damaging(0.993) TCGA-BR-4292-01 1 201289420 201289420 C T PKP1 Missense_Mutation p.R441C 0.26 deleterious(0) probably_damaging(0.999) TCGA-BR-4292-01 1 203040880 203040880 C T PPFIA4 Silent p.L623L 0.18 TCGA-BR-4292-01 1 203098074 203098074 G T ADORA1 Missense_Mutation p.K35N 0.30 deleterious(0.04) benign(0.248) TCGA-BR-4292-01 1 204170836 204170836 C - GOLT1A Frame_Shift_Del p.G74Vfs*64 0.31 TCGA-BR-4292-01 1 206820772 206820772 T - DYRK3 Frame_Shift_Del p.L78Wfs*6 0.24 TCGA-BR-4292-01 1 209811925 209811925 A G LAMB3 Silent p.N84N 0.38 TCGA-BR-4292-01 1 210415509 210415509 G A SERTAD4 Missense_Mutation p.E300K 0.30 deleterious(0.03) benign(0.067) TCGA-BR-4292-01 1 215256673 215256673 A - KCNK2 5'UTR 0.35 TCGA-BR-4292-01 1 217793680 217793680 C T GPATCH2 Missense_Mutation p.R73Q 0.06 deleterious(0.02) probably_damaging(0.998) TCGA-BR-4292-01 1 220369638 220369638 A G RAB3GAP2 Missense_Mutation p.I305T 0.30 deleterious(0.02) benign(0.027) TCGA-BR-4292-01 1 22181934 22181934 C T HSPG2 Missense_Mutation p.G1954S 0.25 benign(0.001) TCGA-BR-4292-01 1 225155501 225155501 A T DNAH14 Intron 0.31 TCGA-BR-4292-01 1 225594521 225594521 G A LBR Missense_Mutation p.T443M 0.15 tolerated(0.05) probably_damaging(1) TCGA-BR-4292-01 1 228402783 228402783 G A OBSCN Silent p.P604P 0.21 TCGA-BR-4292-01 1 229422273 229422273 T C RAB4A Silent p.T24T 0.37 TCGA-BR-4292-01 1 229667403 229667403 T G ABCB10 Missense_Mutation p.E472A 0.28 deleterious(0.04) benign(0.016) TCGA-BR-4292-01 1 229772399 229772399 A C URB2 Missense_Mutation p.Q680P 0.34 deleterious(0) probably_damaging(0.996) TCGA-BR-4292-01 1 2303936 2303936 G A MORN1 Silent p.H243H 0.21 TCGA-BR-4292-01 1 231155559 231155559 C T FAM89A 3'UTR 0.28 TCGA-BR-4292-01 1 23208938 23208938 G A EPHB2 Missense_Mutation p.G464S 0.38 tolerated(0.11) probably_damaging(0.954) TCGA-BR-4292-01 1 232574902 232574902 G A SIPA1L2 Missense_Mutation p.A1328V 0.24 tolerated(0.6) benign(0.001) TCGA-BR-4292-01 1 232943121 232943122 - A MAP10 Frame_Shift_Ins p.I786Nfs*14 0.23 TCGA-BR-4292-01 1 235345419 235345419 T - ARID4B Frame_Shift_Del p.T939Rfs*2 0.26 TCGA-BR-4292-01 1 235505913 235505913 A - GGPS1 Frame_Shift_Del p.K245Nfs*10 0.24 TCGA-BR-4292-01 1 236142400 236142400 C T NID1 Missense_Mutation p.V1173M 0.24 deleterious(0) probably_damaging(0.982) TCGA-BR-4292-01 1 236154336 236154336 C T NID1 Silent p.P926P 0.29 TCGA-BR-4292-01 1 23760793 23760793 G T ASAP3 Silent p.P635P 0.37 TCGA-BR-4292-01 1 238048857 238048857 C T ZP4 Missense_Mutation p.G332S 0.33 tolerated(0.26) benign(0.108) TCGA-BR-4292-01 1 24119502 24119502 T - LYPLA2 Frame_Shift_Del p.L30Yfs*35 0.30 TCGA-BR-4292-01 1 242045292 242045292 A - EXO1 Frame_Shift_Del p.D731Tfs*4 0.25 TCGA-BR-4292-01 1 242253062 242253062 A - PLD5 3'UTR 0.22 TCGA-BR-4292-01 1 245849621 245849621 C T KIF26B Silent p.G1112G 0.35 TCGA-BR-4292-01 1 247836183 247836183 G A OR13G1 Missense_Mutation p.T54M 0.15 deleterious(0.02) benign(0.006) TCGA-BR-4292-01 1 248084867 248084867 T C OR2T8 Missense_Mutation p.V183A 0.16 deleterious(0) possibly_damaging(0.803) TCGA-BR-4292-01 1 248436569 248436569 A G OR2T33 Missense_Mutation p.V183A 0.28 deleterious(0) possibly_damaging(0.803) TCGA-BR-4292-01 1 248845531 248845531 G A OR14I1 Silent p.H25H 0.34 TCGA-BR-4292-01 1 249149812 249149812 C T ZNF692 Missense_Mutation p.A307T 0.32 tolerated(0.34) benign(0.01) TCGA-BR-4292-01 1 26357744 26357744 A G EXTL1 Missense_Mutation p.Y408C 0.37 deleterious(0.01) possibly_damaging(0.599) TCGA-BR-4292-01 1 26900923 26900923 T - RPS6KA1 3'Flank 0.53 TCGA-BR-4292-01 1 27105931 27105931 G - ARID1A Frame_Shift_Del p.D1850Tfs*33 0.34 TCGA-BR-4292-01 1 27106862 27106862 G A ARID1A Missense_Mutation p.R2158Q 0.30 possibly_damaging(0.757) TCGA-BR-4292-01 1 27687696 27687696 G - MAP3K6 Frame_Shift_Del p.P595Rfs*12 0.43 TCGA-BR-4292-01 1 31194535 31194535 C T MATN1 Missense_Mutation p.R53Q 0.33 deleterious(0.01) benign(0.273) TCGA-BR-4292-01 1 31452917 31452917 G A PUM1 Missense_Mutation p.A449V 0.40 deleterious(0) possibly_damaging(0.592) TCGA-BR-4292-01 1 32557419 32557419 C T TMEM39B Missense_Mutation p.T245M 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.88) TCGA-BR-4292-01 1 32672879 32672879 G A IQCC Silent p.A279A 0.41 TCGA-BR-4292-01 1 3395142 3395142 C T ARHGEF16 Missense_Mutation p.R594C 0.40 deleterious(0) probably_damaging(0.982) TCGA-BR-4292-01 1 35260514 35260514 C T GJA4 Missense_Mutation p.R234C 0.38 deleterious(0) benign(0.002) TCGA-BR-4292-01 1 35351116 35351116 G A DLGAP3 Missense_Mutation p.A626V 0.22 tolerated(0.39) possibly_damaging(0.613) TCGA-BR-4292-01 1 36026733 36026733 G A NCDN Silent p.T327T 0.39 TCGA-BR-4292-01 1 36757051 36757051 C T THRAP3 Missense_Mutation p.R608C 0.36 tolerated(0.05) benign(0.003) TCGA-BR-4292-01 1 3765295 3765295 C T CEP104 Missense_Mutation p.R55Q 0.30 tolerated(0.07) possibly_damaging(0.843) TCGA-BR-4292-01 1 3789133 3789133 A G DFFB Missense_Mutation p.H260R 0.25 deleterious(0) probably_damaging(0.998) TCGA-BR-4292-01 1 38288328 38288328 G A MTF1 Missense_Mutation p.T411I 0.16 tolerated(0.13) benign(0.005) TCGA-BR-4292-01 1 38305655 38305655 G A MTF1 Missense_Mutation p.T195M 0.33 deleterious(0) probably_damaging(1) TCGA-BR-4292-01 1 38462977 38462977 T - FHL3 3'UTR 0.42 TCGA-BR-4292-01 1 41220094 41220094 G A NFYC Intron 0.38 TCGA-BR-4292-01 1 41304235 41304235 C T KCNQ4 3'UTR 0.48 TCGA-BR-4292-01 1 42776750 42776750 T A FOXJ3 Silent p.G5G 0.25 TCGA-BR-4292-01 1 43886645 43886645 C T SZT2 Missense_Mutation p.T496M 0.30 deleterious(0.01) probably_damaging(0.983) TCGA-BR-4292-01 1 44069662 44069662 C T PTPRF Missense_Mutation p.R947C 0.35 deleterious(0.04) possibly_damaging(0.832) TCGA-BR-4292-01 1 44364960 44364960 G A ST3GAL3 Intron 0.43 TCGA-BR-4292-01 1 45155395 45155395 C T C1orf228 Missense_Mutation p.A9V 0.50 deleterious(0) probably_damaging(0.993) TCGA-BR-4292-01 1 45809251 45809251 T C TOE1 Silent p.P470P 0.30 TCGA-BR-4292-01 1 45813598 45813598 G A TESK2 Silent p.P205P 0.32 TCGA-BR-4292-01 1 46088681 46088681 C T CCDC17 Missense_Mutation p.R201Q 0.28 tolerated(0.15) benign(0.142) TCGA-BR-4292-01 1 51005335 51005336 - T FAF1 Frame_Shift_Ins p.T445Nfs*17 0.29 TCGA-BR-4292-01 1 54059810 54059810 G A GLIS1 Missense_Mutation p.H256Y 0.29 deleterious(0) probably_damaging(0.997) TCGA-BR-4292-01 1 59812017 59812017 G - FGGY Frame_Shift_Del p.V140* 0.38 TCGA-BR-4292-01 1 6169955 6169955 G A CHD5 Silent p.N1826N 0.30 TCGA-BR-4292-01 1 62503676 62503676 C T INADL Silent p.A1329A 0.28 TCGA-BR-4292-01 1 67450349 67450349 A C MIER1 Missense_Mutation p.K488N 0.21 tolerated(0.19) benign(0.021) TCGA-BR-4292-01 1 67880887 67880887 G A SERBP1 Missense_Mutation p.R378C 0.31 tolerated(0.21) benign(0.002) TCGA-BR-4292-01 1 74957869 74957869 G A TNNI3K Missense_Mutation p.R858Q 0.33 tolerated_low_confidence(0.11) benign(0.016) TCGA-BR-4292-01 1 75037295 75037295 C T C1orf173 Missense_Mutation p.E1367K 0.37 tolerated(0.07) possibly_damaging(0.903) TCGA-BR-4292-01 1 7721916 7721916 C T CAMTA1 Silent p.T265T 0.60 TCGA-BR-4292-01 1 78422353 78422353 A G FUBP1 Missense_Mutation p.W537R 0.22 deleterious(0.03) unknown(0) TCGA-BR-4292-01 1 78959195 78959195 G A PTGFR Missense_Mutation p.C256Y 0.19 deleterious(0.02) probably_damaging(0.972) TCGA-BR-4292-01 1 8384692 8384692 C T SLC45A1 Silent p.Y101Y 0.29 TCGA-BR-4292-01 1 8420774 8420774 C T RERE Silent p.P931P 0.19 TCGA-BR-4292-01 1 87814424 87814424 G T LMO4 3'UTR 0.24 TCGA-BR-4292-01 1 89206691 89206691 G A PKN2 Silent p.P23P 0.36 TCGA-BR-4292-01 1 9017324 9017324 G A CA6 Missense_Mutation p.G130R 0.37 deleterious(0) probably_damaging(0.995) TCGA-BR-4292-01 1 91844741 91844741 C T HFM1 Missense_Mutation p.R346H 0.38 deleterious(0.01) probably_damaging(0.996) TCGA-BR-4292-01 1 92649446 92649446 G A KIAA1107 Silent p.L1208L 0.32 TCGA-BR-4292-01 1 93029202 93029202 A G EVI5 Silent p.H705H 0.32 TCGA-BR-4292-01 1 9416314 9416315 - C SPSB1 Frame_Shift_Ins p.L124Pfs*13 0.34 TCGA-BR-4292-01 1 95709927 95709928 TG - RWDD3 Frame_Shift_Del p.V83Efs*6 0.30 TCGA-BR-4292-01 1 9656943 9656943 C T TMEM201 Silent p.P87P 0.40 TCGA-BR-4292-01 20 10277684 10277684 C T SNAP25 Silent p.G131G 0.27 TCGA-BR-4292-01 20 10622442 10622442 C T JAG1 Missense_Mutation p.A891T 0.29 tolerated(0.52) benign(0.001) TCGA-BR-4292-01 20 1106263 1106263 C T PSMF1 Silent p.T84T 0.22 TCGA-BR-4292-01 20 14308191 14308191 G A FLRT3 5'UTR 0.18 TCGA-BR-4292-01 20 16729527 16729527 C T OTOR Missense_Mutation p.A44V 0.20 deleterious(0.03) benign(0.225) TCGA-BR-4292-01 20 16729576 16729577 - A OTOR Frame_Shift_Ins p.G63Rfs*27 0.20 TCGA-BR-4292-01 20 17462676 17462676 C T PCSK2 Silent p.A626A 0.25 TCGA-BR-4292-01 20 18143418 18143418 G A CSRP2BP Silent p.A500A 0.32 TCGA-BR-4292-01 20 18296783 18296783 C T ZNF133 Missense_Mutation p.R429W 0.21 deleterious(0.01) possibly_damaging(0.658) TCGA-BR-4292-01 20 18448239 18448239 A G POLR3F Intron 0.27 TCGA-BR-4292-01 20 20257973 20257973 G A C20orf26 Silent p.A889A 0.19 TCGA-BR-4292-01 20 21687147 21687147 C T PAX1 Missense_Mutation p.R120C 0.31 deleterious(0) probably_damaging(1) TCGA-BR-4292-01 20 21687491 21687491 C T PAX1 Silent p.Y234Y 0.28 TCGA-BR-4292-01 20 25011401 25011401 T C ACSS1 Missense_Mutation p.N209D 0.50 tolerated(0.61) benign(0.023) TCGA-BR-4292-01 20 31427543 31427543 C T MAPRE1 Missense_Mutation p.P160S 0.14 tolerated(0.07) benign(0.057) TCGA-BR-4292-01 20 3146842 3146842 T C LZTS3 Silent p.P208P 0.44 TCGA-BR-4292-01 20 31967484 31967484 A G CDK5RAP1 Missense_Mutation p.V297A 0.25 deleterious(0) probably_damaging(0.946) TCGA-BR-4292-01 20 3321162 3321163 - AA C20orf194 Frame_Shift_Ins p.A324Lfs*6 0.14 TCGA-BR-4292-01 20 34053898 34053898 C T CEP250 Nonsense_Mutation p.R121* 0.20 TCGA-BR-4292-01 20 34241967 34241967 A G RBM12 Silent p.H426H 0.35 TCGA-BR-4292-01 20 35155495 35155495 C T DLGAP4 3'UTR 0.37 TCGA-BR-4292-01 20 35317088 35317088 G T NDRG3 Missense_Mutation p.L65I 0.25 deleterious(0) possibly_damaging(0.778) TCGA-BR-4292-01 20 3565398 3565398 G T ATRN Missense_Mutation p.G1019C 0.33 tolerated(0.05) probably_damaging(1) TCGA-BR-4292-01 20 35663858 35663858 C T RBL1 Missense_Mutation p.A653T 0.41 tolerated(0.12) possibly_damaging(0.847) TCGA-BR-4292-01 20 35835788 35835788 A G RPN2 Missense_Mutation p.H268R 0.10 deleterious(0.03) benign(0.232) TCGA-BR-4292-01 20 37146233 37146233 C - RALGAPB Frame_Shift_Del p.P381Hfs*11 0.28 TCGA-BR-4292-01 20 37357184 37357184 G A SLC32A1 Missense_Mutation p.V494I 0.26 tolerated(1) benign(0.025) TCGA-BR-4292-01 20 37662959 37662959 C T DHX35 Missense_Mutation p.T689M 0.27 deleterious(0) benign(0.137) TCGA-BR-4292-01 20 409650 409652 AGA - RBCK1 In_Frame_Del p.K457del 0.35 TCGA-BR-4292-01 20 4164164 4164164 C T SMOX Missense_Mutation p.R465W 0.11 deleterious(0.01) benign(0.133) TCGA-BR-4292-01 20 43034816 43034816 C T HNF4A Silent p.D78D 0.33 TCGA-BR-4292-01 20 44184357 44184357 G A WFDC8 Missense_Mutation p.T143M 0.33 tolerated(0.23) benign(0.053) TCGA-BR-4292-01 20 44641107 44641107 G A MMP9 Missense_Mutation p.A406T 0.34 tolerated(0.07) possibly_damaging(0.649) TCGA-BR-4292-01 20 44685876 44685876 C T SLC12A5 Missense_Mutation p.R1088W 0.40 deleterious(0.02) benign(0.339) TCGA-BR-4292-01 20 44815281 44815281 G A CDH22 Missense_Mutation p.R537C 0.24 deleterious(0) possibly_damaging(0.828) TCGA-BR-4292-01 20 47605849 47605849 T G ARFGEF2 Missense_Mutation p.L854R 0.39 tolerated(0.06) benign(0.146) TCGA-BR-4292-01 20 47611069 47611069 C T ARFGEF2 Missense_Mutation p.R1019C 0.36 deleterious(0.01) possibly_damaging(0.786) TCGA-BR-4292-01 20 4843454 4843454 C - SLC23A2 Frame_Shift_Del p.V486Cfs*12 0.31 TCGA-BR-4292-01 20 48604589 48604589 G A SNAI1 Missense_Mutation p.R264H 0.43 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-BR-4292-01 20 49508895 49508895 T G ADNP Missense_Mutation p.I786L 0.26 tolerated(0.14) possibly_damaging(0.5) TCGA-BR-4292-01 20 50140064 50140064 G A NFATC2 Missense_Mutation p.P239L 0.25 deleterious(0) probably_damaging(0.999) TCGA-BR-4292-01 20 51870992 51870992 C - TSHZ2 Frame_Shift_Del p.D334Ifs*47 0.09 TCGA-BR-4292-01 20 52193292 52193292 C T ZNF217 Missense_Mutation p.A671T 0.28 tolerated(0.52) benign(0.004) TCGA-BR-4292-01 20 57269569 57269569 G A NPEPL1 Missense_Mutation p.R143H 0.38 tolerated(0.14) benign(0.004) TCGA-BR-4292-01 20 57768886 57768886 T C ZNF831 Missense_Mutation p.S938P 0.34 tolerated(1) benign(0.001) TCGA-BR-4292-01 20 58563985 58563985 G A CDH26 Silent p.A350A 0.27 TCGA-BR-4292-01 20 61341143 61341143 C - NTSR1 Frame_Shift_Del p.S196Rfs*60 0.34 TCGA-BR-4292-01 20 61391505 61391505 C G NTSR1 Missense_Mutation p.C381W 0.25 tolerated(0.18) benign(0.405) TCGA-BR-4292-01 20 61834535 61834535 C T YTHDF1 Missense_Mutation p.G253R 0.30 deleterious(0.01) probably_damaging(0.962) TCGA-BR-4292-01 20 62070960 62070960 C T KCNQ2 Silent p.A306A 0.23 TCGA-BR-4292-01 20 62178751 62178751 C T SRMS Silent p.A22A 0.43 TCGA-BR-4292-01 20 62196899 62196899 G A HELZ2 Silent p.D1092D 0.30 TCGA-BR-4292-01 20 62598745 62598745 G A ZNF512B Nonsense_Mutation p.R85* 0.35 TCGA-BR-4292-01 20 62729786 62729786 G A OPRL1 Silent p.S249S 0.30 TCGA-BR-4292-01 20 8862464 8862464 A G PLCB1 Missense_Mutation p.I1207V 0.29 tolerated_low_confidence(0.64) benign(0) TCGA-BR-4292-01 21 16338141 16338141 G A NRIP1 Silent p.S791S 0.50 TCGA-BR-4292-01 21 30949413 30949413 C T GRIK1 Silent p.T667T 0.33 TCGA-BR-4292-01 21 31812904 31812904 C T KRTAP15-1 Missense_Mutation p.R87C 0.28 tolerated(1) benign(0) TCGA-BR-4292-01 21 33684272 33684272 C - MRAP Frame_Shift_Del p.P163Lfs*18 0.26 TCGA-BR-4292-01 21 34903066 34903066 T C GART Missense_Mutation p.Q241R 0.23 tolerated(0.09) probably_damaging(0.962) TCGA-BR-4292-01 21 35890428 35890429 - T RCAN1 Frame_Shift_Ins p.I238Nfs*72 0.25 TCGA-BR-4292-01 21 38115733 38115733 C A SIM2 Silent p.S348S 0.34 TCGA-BR-4292-01 21 38498385 38498385 G A TTC3 Silent p.A413A 0.32 TCGA-BR-4292-01 21 38555143 38555144 AA - TTC3 Frame_Shift_Del p.K1564Rfs*14 0.27 TCGA-BR-4292-01 21 38600102 38600102 C T DSCR3 Missense_Mutation p.A222T 0.15 deleterious(0.02) probably_damaging(0.99) TCGA-BR-4292-01 21 43161498 43161498 C T RIPK4 Missense_Mutation p.V619M 0.20 deleterious(0) probably_damaging(1) TCGA-BR-4292-01 21 43165934 43165935 - G RIPK4 Frame_Shift_Ins p.E308Gfs*21 0.31 TCGA-BR-4292-01 21 43531694 43531694 G T UMODL1 Missense_Mutation p.A788S 0.28 tolerated(0.63) possibly_damaging(0.567) TCGA-BR-4292-01 21 44480625 44480625 G A CBS Silent p.A357A 0.27 TCGA-BR-4292-01 21 45535691 45535691 A G PWP2 Silent p.E242E 0.33 TCGA-BR-4292-01 21 45547909 45547909 C - PWP2 Frame_Shift_Del p.R749Gfs*58 0.16 TCGA-BR-4292-01 21 45706979 45706979 G A AIRE Silent p.A142A 0.29 TCGA-BR-4292-01 21 45798982 45798982 G A TRPM2 Missense_Mutation p.D373N 0.37 tolerated(0.06) benign(0.002) TCGA-BR-4292-01 21 45825802 45825802 C T TRPM2 Missense_Mutation p.T891M 0.32 tolerated(0.25) benign(0.149) TCGA-BR-4292-01 21 46596311 46596311 G T ADARB1 Missense_Mutation p.S232I 0.35 deleterious(0.04) probably_damaging(0.98) TCGA-BR-4292-01 21 47360075 47360075 G A PCBP3 Silent p.P347P 0.33 TCGA-BR-4292-01 22 16449802 16449802 C T OR11H1 Translation_Start_Site p.M1? 0.14 tolerated_low_confidence(0.52) benign(0) TCGA-BR-4292-01 22 17072267 17072267 C T CCT8L2 Missense_Mutation p.V392I 0.33 tolerated(0.23) benign(0.109) TCGA-BR-4292-01 22 17072678 17072678 C A CCT8L2 Missense_Mutation p.A255S 0.33 tolerated(0.07) benign(0.253) TCGA-BR-4292-01 22 19055664 19055664 C T DGCR2 Missense_Mutation p.D93N 0.38 tolerated_low_confidence(0.09) benign(0.009) TCGA-BR-4292-01 22 19379688 19379688 G A HIRA Missense_Mutation p.A291V 0.29 tolerated(0.34) benign(0.084) TCGA-BR-4292-01 22 19882652 19882652 C T TXNRD2 Intron 0.27 TCGA-BR-4292-01 22 20819360 20819360 G A KLHL22 Silent p.C299C 0.35 TCGA-BR-4292-01 22 21134078 21134078 A CCTGCG SERPIND1 Frame_Shift_Ins p.T160Pfs*7 0.29 TCGA-BR-4292-01 22 21351217 21351217 C T LZTR1 Missense_Mutation p.R790W 0.19 deleterious(0) possibly_damaging(0.588) TCGA-BR-4292-01 22 22065181 22065181 C T YPEL1 5'UTR 0.39 TCGA-BR-4292-01 22 22989563 22989563 C T GGTLC2 Intron 0.29 TCGA-BR-4292-01 22 24659690 24659690 C T POM121L9P RNA 0.20 TCGA-BR-4292-01 22 25145382 25145382 A G PIWIL3 Silent p.N441N 0.31 TCGA-BR-4292-01 22 26861510 26861510 T C HPS4 Silent p.A238A 0.10 TCGA-BR-4292-01 22 26868359 26868359 G A HPS4 Missense_Mutation p.T137M 0.38 tolerated(0.13) benign(0.04) TCGA-BR-4292-01 22 27012211 27012211 C A CRYBB1 Missense_Mutation p.G25W 0.29 deleterious(0) probably_damaging(1) TCGA-BR-4292-01 22 36702620 36702620 C T MYH9 Missense_Mutation p.G626D 0.10 possibly_damaging(0.677) TCGA-BR-4292-01 22 36708256 36708256 C T MYH9 Silent p.P522P 0.30 TCGA-BR-4292-01 22 37893150 37893150 G - CARD10 Frame_Shift_Del p.P608Qfs*75 0.26 TCGA-BR-4292-01 22 38525530 38525530 C T PLA2G6 Missense_Mutation p.G373R 0.34 deleterious(0) probably_damaging(1) TCGA-BR-4292-01 22 38823343 38823343 G A KCNJ4 Silent p.I265I 0.25 TCGA-BR-4292-01 22 39712858 39712858 G T RPL3 Intron 0.28 TCGA-BR-4292-01 22 39826041 39826041 G T TAB1 Silent p.L443L 0.36 TCGA-BR-4292-01 22 40075136 40075136 G A CACNA1I Missense_Mutation p.D1694N 0.58 tolerated(0.12) possibly_damaging(0.831) TCGA-BR-4292-01 22 41564766 41564766 G A EP300 Missense_Mutation p.R1356Q 0.19 possibly_damaging(0.88) TCGA-BR-4292-01 22 41652106 41652106 T C RANGAP1 Missense_Mutation p.N331S 0.33 deleterious(0) probably_damaging(0.996) TCGA-BR-4292-01 22 42456139 42456139 C T NAGA 3'UTR 0.20 TCGA-BR-4292-01 22 43213780 43213780 T - ARFGAP3 Frame_Shift_Del p.N299Mfs*22 0.27 TCGA-BR-4292-01 22 43604220 43604220 C A SCUBE1 Silent p.T864T 0.40 TCGA-BR-4292-01 22 45972965 45972965 G A FBLN1 Missense_Mutation p.R650H 0.33 tolerated(0.05) possibly_damaging(0.84) TCGA-BR-4292-01 22 46643046 46643046 C T CDPF1 Silent p.S62S 0.33 TCGA-BR-4292-01 22 46658051 46658051 C T PKDREJ Missense_Mutation p.R390Q 0.10 tolerated(0.56) benign(0) TCGA-BR-4292-01 22 46931227 46931227 C - CELSR1 Frame_Shift_Del p.G614Afs*54 0.32 TCGA-BR-4292-01 22 47064782 47064782 A T GRAMD4 Missense_Mutation p.Y354F 0.37 tolerated(0.33) benign(0.007) TCGA-BR-4292-01 22 50277678 50277679 - T ZBED4 Frame_Shift_Ins p.I126Yfs*8 0.27 TCGA-BR-4292-01 22 50559005 50559005 A - MOV10L1 Frame_Shift_Del p.I512Lfs*4 0.27 TCGA-BR-4292-01 22 50663014 50663014 C T TUBGCP6 Missense_Mutation p.R664H 0.42 deleterious(0.02) probably_damaging(0.984) TCGA-BR-4292-01 22 50716155 50716155 C T PLXNB2 Silent p.R1687R 0.29 TCGA-BR-4292-01 22 50728968 50728968 C T PLXNB2 Missense_Mutation p.A16T 0.35 tolerated(0.46) unknown(0) TCGA-BR-4292-01 22 50962178 50962178 G A SCO2 Silent p.I221I 0.33 TCGA-BR-4292-01 22 51160465 51160465 G A SHANK3 Missense_Mutation p.G1418R 0.30 probably_damaging(0.999) TCGA-BR-4292-01 2 100013282 100013282 G A EIF5B Missense_Mutation p.R1105Q 0.23 probably_damaging(0.999) TCGA-BR-4292-01 2 101188062 101188062 T C PDCL3 Missense_Mutation p.C127R 0.23 deleterious(0) probably_damaging(0.991) TCGA-BR-4292-01 2 10560003 10560003 C T HPCAL1 Silent p.T40T 0.39 TCGA-BR-4292-01 2 10567047 10567047 G A HPCAL1 3'UTR 0.55 TCGA-BR-4292-01 2 112704982 112704982 T - MERTK Frame_Shift_Del p.F199Lfs*8 0.31 TCGA-BR-4292-01 2 113832958 113832958 G A IL1F10 3'UTR 0.36 TCGA-BR-4292-01 2 118860775 118860775 G A INSIG2 Missense_Mutation p.V83M 0.48 deleterious(0.03) benign(0.009) TCGA-BR-4292-01 2 120020821 120020821 C T STEAP3 Silent p.L468L 0.35 TCGA-BR-4292-01 2 120195018 120195018 C T TMEM37 3'UTR 0.34 TCGA-BR-4292-01 2 121107076 121107076 G A INHBB Missense_Mutation p.D284N 0.35 deleterious(0) probably_damaging(0.961) TCGA-BR-4292-01 2 130948157 130948157 G - MZT2B Frame_Shift_Del p.G147Afs*? 0.37 TCGA-BR-4292-01 2 130951399 130951399 C T TUBA3E Missense_Mutation p.R339H 0.31 tolerated_low_confidence(0.05) benign(0.155) TCGA-BR-4292-01 2 131103825 131103825 C T IMP4 Silent p.V247V 0.40 TCGA-BR-4292-01 2 136594278 136594279 AT - LCT Frame_Shift_Del p.Y154Cfs*20 0.29 TCGA-BR-4292-01 2 137852592 137852592 A T THSD7B Missense_Mutation p.N367I 0.46 tolerated(0.36) possibly_damaging(0.844) TCGA-BR-4292-01 2 139326628 139326628 G A SPOPL Missense_Mutation p.R386H 0.34 tolerated(0.55) possibly_damaging(0.768) TCGA-BR-4292-01 2 144710386 144710386 A C GTDC1 Missense_Mutation p.C385W 0.34 deleterious(0) probably_damaging(1) TCGA-BR-4292-01 2 1459959 1459959 G A TPO Missense_Mutation p.A242T 0.10 tolerated(0.31) benign(0.408) TCGA-BR-4292-01 2 148674946 148674946 G A ACVR2A Missense_Mutation p.G256D 0.34 deleterious(0.04) possibly_damaging(0.808) TCGA-BR-4292-01 2 148683686 148683686 A - ACVR2A Frame_Shift_Del p.K437Rfs*5 0.63 TCGA-BR-4292-01 2 152521924 152521924 C T NEB Missense_Mutation p.E1721K 0.58 possibly_damaging(0.737) TCGA-BR-4292-01 2 158980303 158980303 A - UPP2 Frame_Shift_Del p.K295Sfs*2 0.26 TCGA-BR-4292-01 2 163072486 163072486 C T FAP Missense_Mutation p.R263Q 0.66 tolerated(0.11) benign(0.176) TCGA-BR-4292-01 2 1657550 1657550 G A PXDN Missense_Mutation p.R652C 0.43 tolerated(0.08) benign(0.021) TCGA-BR-4292-01 2 172188335 172188335 A G METTL8 Silent p.S233S 0.33 TCGA-BR-4292-01 2 177017383 177017383 T C HOXD4 Missense_Mutation p.Y161H 0.53 deleterious(0) probably_damaging(1) TCGA-BR-4292-01 2 179397385 179397385 G A TTN Missense_Mutation p.R34653C 0.25 TCGA-BR-4292-01 2 179403334 179403334 A - TTN Frame_Shift_Del p.F33074Lfs*8 0.42 TCGA-BR-4292-01 2 179435651 179435651 C A TTN Missense_Mutation p.G25070C 0.06 TCGA-BR-4292-01 2 179499546 179499546 G A TTN Missense_Mutation p.R14019C 0.59 TCGA-BR-4292-01 2 179535860 179535860 T - TTN Frame_Shift_Del p.K11755Nfs*25 0.33 TCGA-BR-4292-01 2 18112315 18112315 G A KCNS3 Missense_Mutation p.E14K 0.24 tolerated(0.06) benign(0.011) TCGA-BR-4292-01 2 183867725 183867725 C T NCKAP1 Missense_Mutation p.V122I 0.66 deleterious(0.03) benign(0.04) TCGA-BR-4292-01 2 187698688 187698688 C T ZSWIM2 Silent p.T271T 0.29 TCGA-BR-4292-01 2 190656532 190656532 G A PMS1 5'UTR 0.32 TCGA-BR-4292-01 2 191301046 191301046 A G MFSD6 Silent p.G97G 0.62 TCGA-BR-4292-01 2 191850352 191850352 G A STAT1 Missense_Mutation p.T419M 0.62 tolerated(0.29) probably_damaging(0.947) TCGA-BR-4292-01 2 198950564 198950564 A G PLCL1 Missense_Mutation p.N775D 0.24 tolerated(0.13) benign(0.159) TCGA-BR-4292-01 2 198950794 198950794 T C PLCL1 Silent p.S851S 0.25 TCGA-BR-4292-01 2 199011601 199011601 C A PLCL1 Missense_Mutation p.P1068H 0.64 deleterious(0.03) unknown(0) TCGA-BR-4292-01 2 200790166 200790167 - A C2orf69 Frame_Shift_Ins p.S241Ifs*2 0.28 TCGA-BR-4292-01 2 201822217 201822217 T - ORC2 Frame_Shift_Del p.I49* 0.21 TCGA-BR-4292-01 2 202093873 202093873 G A CASP10 3'UTR 0.14 TCGA-BR-4292-01 2 202151290 202151290 A - CASP8 Frame_Shift_Del p.K532Nfs*73 0.27 TCGA-BR-4292-01 2 202625614 202625614 A G ALS2 Missense_Mutation p.V368A 0.33 tolerated(0.8) benign(0.001) TCGA-BR-4292-01 2 203420130 203420130 A - BMPR2 Frame_Shift_Del p.N583Tfs*44 0.24 TCGA-BR-4292-01 2 20402951 20402951 C T SDC1 Silent p.T220T 0.47 TCGA-BR-4292-01 2 206921336 206921337 TC - INO80D Frame_Shift_Del p.E183Dfs*12 0.29 TCGA-BR-4292-01 2 207174321 207174321 G A ZDBF2 Missense_Mutation p.R1690Q 0.61 tolerated(0.36) benign(0.01) TCGA-BR-4292-01 2 208424959 208424959 C T CREB1 Missense_Mutation p.P42S 0.37 tolerated(0.16) benign(0.001) TCGA-BR-4292-01 2 209025576 209025577 - C CRYGA Frame_Shift_Ins p.A160Cfs*29 0.51 TCGA-BR-4292-01 2 212288880 212288881 - T ERBB4 Frame_Shift_Ins p.C956Mfs*5 0.25 TCGA-BR-4292-01 2 213403254 213403254 T - ERBB4 Frame_Shift_Del p.M1? 0.36 TCGA-BR-4292-01 2 213872376 213872376 C A IKZF2 Missense_Mutation p.R430M 0.33 tolerated(0.1) benign(0.284) TCGA-BR-4292-01 2 217315720 217315720 G A SMARCAL1 Missense_Mutation p.R668Q 0.27 tolerated(0.65) benign(0.037) TCGA-BR-4292-01 2 218678471 218678471 C T TNS1 Missense_Mutation p.A1496T 0.71 deleterious(0) probably_damaging(1) TCGA-BR-4292-01 2 219229425 219229425 C T C2orf62 Silent p.H235H 0.39 TCGA-BR-4292-01 2 219528663 219528663 C A RNF25 3'UTR 0.11 TCGA-BR-4292-01 2 219561885 219561885 C A STK36 Missense_Mutation p.L904I 0.73 tolerated(0.42) benign(0.224) TCGA-BR-4292-01 2 219893021 219893021 G A CCDC108 Missense_Mutation p.R585W 0.70 deleterious(0) probably_damaging(1) TCGA-BR-4292-01 2 220136053 220136053 A G TUBA4B RNA 0.23 TCGA-BR-4292-01 2 223791754 223791754 C T ACSL3 Nonsense_Mutation p.R438* 0.67 TCGA-BR-4292-01 2 226447629 226447629 C T NYAP2 Missense_Mutation p.P499L 0.75 tolerated(0.28) benign(0.093) TCGA-BR-4292-01 2 233323610 233323610 G A ALPI Silent p.S447S 0.75 TCGA-BR-4292-01 2 233393281 233393281 C T CHRND Silent p.L142L 0.74 TCGA-BR-4292-01 2 238233452 238233452 C T COL6A3 Missense_Mutation p.A3167T 0.77 unknown(0) TCGA-BR-4292-01 2 238253700 238253700 C T COL6A3 Splice_Site p.X2388_splice 0.72 TCGA-BR-4292-01 2 238277739 238277739 C T COL6A3 Missense_Mutation p.R1456Q 0.71 probably_damaging(1) TCGA-BR-4292-01 2 241066179 241066179 C T MYEOV2 Missense_Mutation p.R187Q 0.30 tolerated_low_confidence(0.5) unknown(0) TCGA-BR-4292-01 2 241492466 241492466 A G ANKMY1 Silent p.H26H 0.44 TCGA-BR-4292-01 2 241569453 241569453 C T GPR35 Silent p.G59G 0.64 TCGA-BR-4292-01 2 241831149 241831149 C T C2orf54 Silent p.E182E 0.52 TCGA-BR-4292-01 2 242439681 242439681 G T STK25 Missense_Mutation p.L112M 0.19 tolerated(0.07) possibly_damaging(0.847) TCGA-BR-4292-01 2 242815105 242815105 G A CXXC11 Silent p.T466T 0.54 TCGA-BR-4292-01 2 26203351 26203351 C T KIF3C Missense_Mutation p.R479H 0.31 benign(0) TCGA-BR-4292-01 2 26606214 26606214 A G EPT1 Missense_Mutation p.R244G 0.20 tolerated(0.07) benign(0.328) TCGA-BR-4292-01 2 26693574 26693574 C T OTOF Missense_Mutation p.E1304K 0.28 tolerated(1) benign(0.002) TCGA-BR-4292-01 2 26950703 26950703 G A KCNK3 Missense_Mutation p.R151H 0.37 tolerated(0.12) benign(0.002) TCGA-BR-4292-01 2 27150265 27150265 C T DPYSL5 Missense_Mutation p.R189C 0.33 deleterious(0.02) probably_damaging(0.998) TCGA-BR-4292-01 2 27278613 27278613 G A AGBL5 Silent p.P324P 0.32 TCGA-BR-4292-01 2 27282079 27282079 C T AGBL5 Silent p.S632S 0.32 TCGA-BR-4292-01 2 29295029 29295029 C A C2orf71 Missense_Mutation p.G700V 0.28 tolerated(0.13) benign(0.044) TCGA-BR-4292-01 2 37395141 37395142 TT - SULT6B1 Frame_Shift_Del p.K245Rfs*15 0.20 TCGA-BR-4292-01 2 39931305 39931305 C T TMEM178A Missense_Mutation p.T162I 0.29 tolerated(0.08) benign(0.037) TCGA-BR-4292-01 2 42488302 42488302 A - EML4 Frame_Shift_Del p.E130Rfs*43 0.30 TCGA-BR-4292-01 2 44079930 44079930 C T ABCG8 Missense_Mutation p.A296V 0.27 tolerated(0.1) benign(0.014) TCGA-BR-4292-01 2 45169177 45169177 C A SIX3 5'UTR 0.24 TCGA-BR-4292-01 2 45778340 45778340 A C SRBD1 Silent p.P533P 0.31 TCGA-BR-4292-01 2 45800478 45800478 G A SRBD1 Silent p.C391C 0.25 TCGA-BR-4292-01 2 49210115 49210115 C T FSHR Missense_Mutation p.D202N 0.24 tolerated(0.79) benign(0.005) TCGA-BR-4292-01 2 50318469 50318469 T C NRXN1 Missense_Mutation p.Y1277C 0.34 deleterious(0) probably_damaging(0.933) TCGA-BR-4292-01 2 50573961 50573961 C T NRXN1 Intron 0.25 TCGA-BR-4292-01 2 55756040 55756042 AGA - CCDC104 In_Frame_Del p.E104del 0.33 TCGA-BR-4292-01 2 61441428 61441428 G A USP34 Missense_Mutation p.R2817C 0.26 deleterious(0.01) possibly_damaging(0.872) TCGA-BR-4292-01 2 69409628 69409628 C T ANTXR1 Missense_Mutation p.R397C 0.32 deleterious(0) probably_damaging(1) TCGA-BR-4292-01 2 70039823 70039823 C T ANXA4 Silent p.L172L 0.32 TCGA-BR-4292-01 2 71043196 71043196 C A CLEC4F Missense_Mutation p.Q439H 0.37 deleterious(0.02) possibly_damaging(0.496) TCGA-BR-4292-01 2 71148370 71148370 C T VAX2 Silent p.R130R 0.36 TCGA-BR-4292-01 2 71591248 71591248 G A ZNF638 Missense_Mutation p.R528H 0.32 deleterious(0.04) benign(0.064) TCGA-BR-4292-01 2 80529936 80529936 C T LRRTM1 Missense_Mutation p.D337N 0.42 deleterious(0.01) probably_damaging(0.985) TCGA-BR-4292-01 2 86355071 86355071 G A PTCD3 Silent p.S368S 0.36 TCGA-BR-4292-01 2 9017344 9017344 C A MBOAT2 Splice_Site p.X169_splice 0.38 TCGA-BR-4292-01 2 9515028 9515028 T G ASAP2 Silent p.A567A 0.11 TCGA-BR-4292-01 2 98351851 98351851 C T ZAP70 Silent p.A407A 0.41 TCGA-BR-4292-01 2 99008387 99008387 G A CNGA3 Silent p.S209S 0.24 TCGA-BR-4292-01 2 99779031 99779031 C T LIPT1 Missense_Mutation p.A204V 0.35 deleterious(0) possibly_damaging(0.84) TCGA-BR-4292-01 2 99900949 99900950 - C LYG1 Frame_Shift_Ins p.A165Cfs*13 0.09 TCGA-BR-4292-01 3 109050737 109050737 T C DPPA4 Missense_Mutation p.K107R 0.07 tolerated(0.11) benign(0.092) TCGA-BR-4292-01 3 113679539 113679540 - T ZDHHC23 Intron 0.30 TCGA-BR-4292-01 3 119631658 119631658 C G GSK3B Splice_Site p.X203_splice 0.37 TCGA-BR-4292-01 3 121230875 121230875 G A POLQ Silent p.G490G 0.33 TCGA-BR-4292-01 3 122134419 122134419 C A WDR5B 5'UTR 0.25 TCGA-BR-4292-01 3 123051470 123051470 C T ADCY5 Missense_Mutation p.A487T 0.26 deleterious(0) probably_damaging(0.964) TCGA-BR-4292-01 3 123427553 123427553 G A MYLK Missense_Mutation p.T711M 0.33 tolerated(0.08) benign(0.433) TCGA-BR-4292-01 3 124485139 124485139 C T ITGB5 Missense_Mutation p.V691I 0.42 tolerated(0.17) benign(0.009) TCGA-BR-4292-01 3 125648415 125648415 A - ALG1L Intron 0.27 TCGA-BR-4292-01 3 126062587 126062587 C T KLF15 Missense_Mutation p.V412M 0.14 deleterious(0.05) benign(0.05) TCGA-BR-4292-01 3 126735391 126735391 C - PLXNA1 Frame_Shift_Del p.Q1019Rfs*22 0.38 TCGA-BR-4292-01 3 133329880 133329880 T - TOPBP1 Frame_Shift_Del p.I1381Sfs*61 0.26 TCGA-BR-4292-01 3 142122802 142122802 C T XRN1 Missense_Mutation p.R638H 0.25 tolerated(0.64) benign(0.001) TCGA-BR-4292-01 3 142217557 142217557 T - ATR Frame_Shift_Del p.R1814Efs*10 0.14 TCGA-BR-4292-01 3 14239644 14239644 C T LSM3 3'UTR 0.36 TCGA-BR-4292-01 3 142681763 142681763 G A PAQR9 Missense_Mutation p.A139V 0.39 deleterious(0) probably_damaging(0.992) TCGA-BR-4292-01 3 147127796 147127796 C A ZIC1 5'UTR 0.64 TCGA-BR-4292-01 3 14802988 14802989 - G C3orf20 Frame_Shift_Ins p.K790Efs*39 0.25 TCGA-BR-4292-01 3 150301706 150301706 C T EIF2A 3'UTR 0.25 TCGA-BR-4292-01 3 150845633 150845633 G - MED12L Frame_Shift_Del p.E140Rfs*7 0.24 TCGA-BR-4292-01 3 151458608 151458608 C T AADACL2 Nonsense_Mutation p.R105* 0.29 TCGA-BR-4292-01 3 154007599 154007599 A T DHX36 Missense_Mutation p.C611S 0.24 deleterious(0) probably_damaging(1) TCGA-BR-4292-01 3 155301426 155301426 G A PLCH1 Silent p.A190A 0.33 TCGA-BR-4292-01 3 158428614 158428614 C T RARRES1 Missense_Mutation p.E150K 0.25 tolerated(0.12) benign(0.142) TCGA-BR-4292-01 3 159706993 159706993 G A IL12A Intron 0.50 TCGA-BR-4292-01 3 16358730 16358730 G A RFTN1 Nonsense_Mutation p.R448* 0.25 TCGA-BR-4292-01 3 167077712 167077712 T G ZBBX Missense_Mutation p.K126N 0.33 tolerated(0.07) possibly_damaging(0.687) TCGA-BR-4292-01 3 167507159 167507159 A - SERPINI1 Frame_Shift_Del p.N83Mfs*8 0.34 TCGA-BR-4292-01 3 169802469 169802469 A - GPR160 Frame_Shift_Del p.I239Yfs*22 0.34 TCGA-BR-4292-01 3 170204127 170204127 C T SLC7A14 Missense_Mutation p.A264T 0.34 deleterious(0) probably_damaging(0.999) TCGA-BR-4292-01 3 170218991 170218991 C T SLC7A14 Missense_Mutation p.G150R 0.24 tolerated(0.06) probably_damaging(0.969) TCGA-BR-4292-01 3 17051544 17051544 G A PLCL2 Missense_Mutation p.A110T 0.36 deleterious(0.04) probably_damaging(0.932) TCGA-BR-4292-01 3 180666228 180666228 A - FXR1 Frame_Shift_Del p.N124Ifs*14 0.29 TCGA-BR-4292-01 3 182743546 182743546 C T MCCC1 Missense_Mutation p.M576I 0.31 tolerated(0.56) benign(0.013) TCGA-BR-4292-01 3 183896808 183896808 G A AP2M1 Missense_Mutation p.E80K 0.28 tolerated(0.1) possibly_damaging(0.788) TCGA-BR-4292-01 3 183903933 183903933 G T ABCF3 5'UTR 0.18 TCGA-BR-4292-01 3 184090371 184090371 G A THPO Missense_Mutation p.T331M 0.36 tolerated_low_confidence(0.39) benign(0.074) TCGA-BR-4292-01 3 185375140 185375140 G A IGF2BP2 Silent p.G440G 0.41 TCGA-BR-4292-01 3 186395437 186395437 G A HRG Missense_Mutation p.R448H 0.30 tolerated(0.14) benign(0.021) TCGA-BR-4292-01 3 188123957 188123957 G A LPP Missense_Mutation p.G17S 0.30 tolerated(0.21) possibly_damaging(0.83) TCGA-BR-4292-01 3 194062616 194062617 - A CPN2 Frame_Shift_Ins p.L272Ffs*28 0.15 TCGA-BR-4292-01 3 194118379 194118379 C T GP5 Silent p.S211S 0.38 TCGA-BR-4292-01 3 195594978 195594978 T C TNK2 Missense_Mutation p.R794G 0.24 tolerated_low_confidence(0.06) benign(0.438) TCGA-BR-4292-01 3 195944785 195944785 C T SLC51A Silent p.P37P 0.32 TCGA-BR-4292-01 3 20153198 20153198 G A KAT2B Missense_Mutation p.R321Q 0.31 tolerated(0.15) possibly_damaging(0.842) TCGA-BR-4292-01 3 20194018 20194018 T - KAT2B 3'UTR 0.28 TCGA-BR-4292-01 3 20225413 20225413 C T SGOL1 Missense_Mutation p.R36H 0.31 deleterious(0.02) probably_damaging(0.985) TCGA-BR-4292-01 3 25670433 25670433 T - TOP2B Frame_Shift_Del p.N599Ifs*20 0.35 TCGA-BR-4292-01 3 30045454 30045454 T - RBMS3 3'UTR 0.34 TCGA-BR-4292-01 3 33877588 33877588 A T PDCD6IP Missense_Mutation p.N301I 0.34 tolerated(0.4) benign(0.01) TCGA-BR-4292-01 3 37170567 37170567 C T LRRFIP2 Missense_Mutation p.R55Q 0.34 deleterious(0) probably_damaging(0.909) TCGA-BR-4292-01 3 38414150 38414150 C T XYLB Missense_Mutation p.A257V 0.14 tolerated(0.23) benign(0.039) TCGA-BR-4292-01 3 38949440 38949441 - T SCN11A Frame_Shift_Ins p.P492Afs*20 0.20 TCGA-BR-4292-01 3 38962726 38962726 C - SCN11A Frame_Shift_Del p.A245Pfs*6 0.16 TCGA-BR-4292-01 3 39453213 39453213 G A RPSA Missense_Mutation p.R191H 0.09 tolerated(0.3) benign(0.004) TCGA-BR-4292-01 3 44612793 44612793 C T ZKSCAN7 Missense_Mutation p.R731C 0.33 deleterious(0.02) benign(0.03) TCGA-BR-4292-01 3 44636714 44636714 C T ZNF660 3'UTR 0.25 TCGA-BR-4292-01 3 44879832 44879832 A - KIF15 Frame_Shift_Del p.K1081Nfs*13 0.28 TCGA-BR-4292-01 3 46943318 46943318 C T PTH1R Silent p.N393N 0.20 TCGA-BR-4292-01 3 47050494 47050494 G A NBEAL2 Silent p.A2681A 0.35 TCGA-BR-4292-01 3 47315092 47315092 C - KIF9 Frame_Shift_Del p.A106Qfs*21 0.28 TCGA-BR-4292-01 3 49004710 49004710 T C ARIH2 Splice_Site p.X180_splice 0.39 TCGA-BR-4292-01 3 49159606 49159606 G A LAMB2 Missense_Mutation p.R1591W 0.20 deleterious(0) benign(0.001) TCGA-BR-4292-01 3 49756307 49756307 T C AMIGO3 Missense_Mutation p.I198V 0.29 tolerated(0.13) benign(0.008) TCGA-BR-4292-01 3 49897038 49897038 C T CAMKV Missense_Mutation p.D407N 0.32 tolerated_low_confidence(0.25) probably_damaging(0.986) TCGA-BR-4292-01 3 50099537 50099537 C T RBM6 Missense_Mutation p.T861M 0.28 tolerated(0.07) benign(0.336) TCGA-BR-4292-01 3 50211341 50211341 C T SEMA3F Silent p.Y76Y 0.41 TCGA-BR-4292-01 3 50369011 50369011 G A RASSF1 Missense_Mutation p.R251C 0.33 deleterious(0) probably_damaging(0.999) TCGA-BR-4292-01 3 51417604 51417604 C - DOCK3 Frame_Shift_Del p.P1852Qfs*45 0.37 TCGA-BR-4292-01 3 51746928 51746928 G - GRM2 Frame_Shift_Del p.A299Pfs*180 0.44 TCGA-BR-4292-01 3 52522196 52522196 G A NISCH Silent p.A896A 0.41 TCGA-BR-4292-01 3 52557277 52557277 G A STAB1 Missense_Mutation p.D2354N 0.22 tolerated(0.07) possibly_damaging(0.563) TCGA-BR-4292-01 3 52595936 52595936 G A PBRM1 Missense_Mutation p.R1327W 0.08 deleterious(0) possibly_damaging(0.835) TCGA-BR-4292-01 3 52829637 52829637 G - ITIH3 Frame_Shift_Del 0.21 TCGA-BR-4292-01 3 52941285 52941285 C A SFMBT1 Missense_Mutation p.D711Y 0.22 deleterious(0) possibly_damaging(0.733) TCGA-BR-4292-01 3 53889347 53889347 A - IL17RB Frame_Shift_Del p.K172Sfs*23 0.27 TCGA-BR-4292-01 3 62477973 62477973 C T CADPS Missense_Mutation p.R959H 0.34 tolerated(0.08) possibly_damaging(0.522) TCGA-BR-4292-01 3 66293635 66293635 T - SLC25A26 Frame_Shift_Del p.F68Lfs*7 0.31 TCGA-BR-4292-01 3 73432742 73432742 C T PDZRN3 Missense_Mutation p.R992H 0.32 deleterious(0) probably_damaging(0.999) TCGA-BR-4292-01 3 73432975 73432975 C T PDZRN3 Silent p.P914P 0.41 TCGA-BR-4292-01 3 7503408 7503408 A T GRM7 Missense_Mutation p.N505I 0.09 deleterious(0) benign(0.346) TCGA-BR-4292-01 3 78685077 78685077 G A ROBO1 Silent p.Y1073Y 0.31 TCGA-BR-4292-01 3 81548302 81548302 A - GBE1 Frame_Shift_Del p.S671Lfs*36 0.26 TCGA-BR-4292-01 3 99568990 99568990 T - FILIP1L Frame_Shift_Del p.K510Nfs*2 0.24 TCGA-BR-4292-01 3 99890707 99890707 C T CMSS1 Silent p.D181D 0.22 TCGA-BR-4292-01 4 105411999 105412000 CA - CXXC4 Frame_Shift_Del p.C320Wfs*19 0.28 TCGA-BR-4292-01 4 107156505 107156505 T - TBCK Frame_Shift_Del p.N457Tfs*15 0.31 TCGA-BR-4292-01 4 110618908 110618908 C T CASP6 Missense_Mutation p.A34T 0.08 tolerated(0.41) benign(0.004) TCGA-BR-4292-01 4 110757242 110757242 T C RRH Silent p.P159P 0.30 TCGA-BR-4292-01 4 113189356 113189356 C T AP1AR Missense_Mutation p.R234W 0.37 deleterious(0) possibly_damaging(0.606) TCGA-BR-4292-01 4 113462250 113462250 G C C4orf21 Missense_Mutation p.Q1925E 0.33 deleterious(0) possibly_damaging(0.64) TCGA-BR-4292-01 4 120240132 120240132 A C FABP2 3'UTR 0.34 TCGA-BR-4292-01 4 123120560 123120560 T C KIAA1109 Silent p.T445T 0.24 TCGA-BR-4292-01 4 123534050 123534051 - T IL21 Frame_Shift_Ins p.P132Tfs*24 0.26 TCGA-BR-4292-01 4 124517 124517 G A ZNF718 RNA 0.17 TCGA-BR-4292-01 4 126238642 126238642 C T FAT4 Missense_Mutation p.P359L 0.22 probably_damaging(0.994) TCGA-BR-4292-01 4 1348916 1348916 C T UVSSA Silent p.R353R 0.42 TCGA-BR-4292-01 4 1389017 1389017 G A CRIPAK Missense_Mutation p.A240T 0.20 tolerated(0.38) probably_damaging(0.913) TCGA-BR-4292-01 4 15444178 15444178 G A C1QTNF7 Missense_Mutation p.G216R 0.30 deleterious(0) probably_damaging(0.988) TCGA-BR-4292-01 4 166238981 166238981 T G KLHL2 Missense_Mutation p.V542G 0.35 deleterious(0) probably_damaging(0.973) TCGA-BR-4292-01 4 167675677 167675677 A C SPOCK3 Missense_Mutation p.C308G 0.61 deleterious(0.01) possibly_damaging(0.685) TCGA-BR-4292-01 4 169190007 169190007 G A DDX60 Silent p.T928T 0.34 TCGA-BR-4292-01 4 169812119 169812119 G T PALLD Nonsense_Mutation p.E671* 0.30 TCGA-BR-4292-01 4 170345785 170345785 C T NEK1 Silent p.S1047S 0.68 TCGA-BR-4292-01 4 1742700 1742700 A T TACC3 Missense_Mutation p.E737V 0.38 deleterious(0) probably_damaging(0.999) TCGA-BR-4292-01 4 175183955 175183955 C T FBXO8 Missense_Mutation p.V97I 0.39 deleterious(0) probably_damaging(0.991) TCGA-BR-4292-01 4 175231156 175231158 TCT - CEP44 In_Frame_Del p.L280del 0.30 TCGA-BR-4292-01 4 183600990 183600990 A G TENM3 Missense_Mutation p.K500E 0.43 deleterious(0.03) possibly_damaging(0.636) TCGA-BR-4292-01 4 185339687 185339687 T C IRF2 Silent p.K121K 0.69 TCGA-BR-4292-01 4 2306791 2306791 C T ZFYVE28 Missense_Mutation p.A426T 0.39 tolerated_low_confidence(0.23) benign(0.005) TCGA-BR-4292-01 4 25014047 25014047 C T LGI2 Missense_Mutation p.V244M 0.07 deleterious(0.04) possibly_damaging(0.845) TCGA-BR-4292-01 4 25334863 25334863 C T ZCCHC4 Nonsense_Mutation p.Q130* 0.28 TCGA-BR-4292-01 4 25665878 25665878 T - SLC34A2 Frame_Shift_Del p.L103Yfs*46 0.27 TCGA-BR-4292-01 4 25665888 25665888 C T SLC34A2 Silent p.L105L 0.36 TCGA-BR-4292-01 4 2746454 2746454 C T TNIP2 Silent p.A292A 0.33 TCGA-BR-4292-01 4 2948228 2948228 C T NOP14 Missense_Mutation p.A516T 0.29 tolerated(0.39) benign(0.426) TCGA-BR-4292-01 4 3450973 3450973 G - HGFAC Frame_Shift_Del p.L602Wfs*70 0.29 TCGA-BR-4292-01 4 40356371 40356371 C T CHRNA9 Missense_Mutation p.T425M 0.30 tolerated(0.07) benign(0.028) TCGA-BR-4292-01 4 42119703 42119703 C T BEND4 Silent p.S479S 0.29 TCGA-BR-4292-01 4 44177044 44177044 T - KCTD8 Frame_Shift_Del p.A396Hfs*39 0.35 TCGA-BR-4292-01 4 48569288 48569288 G A FRYL Missense_Mutation p.A1049V 0.39 tolerated(0.11) probably_damaging(0.959) TCGA-BR-4292-01 4 52779825 52779825 A G DCUN1D4 3'UTR 0.31 TCGA-BR-4292-01 4 52861190 52861190 T G LRRC66 Silent p.P666P 0.36 TCGA-BR-4292-01 4 54966533 54966533 G A GSX2 Missense_Mutation p.D8N 0.23 deleterious(0) probably_damaging(0.99) TCGA-BR-4292-01 4 57181853 57181853 T C KIAA1211 Missense_Mutation p.S729P 0.33 deleterious(0.04) possibly_damaging(0.504) TCGA-BR-4292-01 4 5733277 5733277 C T EVC Silent p.D170D 0.27 TCGA-BR-4292-01 4 5862758 5862758 A G CRMP1 Missense_Mutation p.M217T 0.38 tolerated(0.17) probably_damaging(0.991) TCGA-BR-4292-01 4 7043508 7043508 C A CCDC96 Silent p.L386L 0.30 TCGA-BR-4292-01 4 71114781 71114781 C T CSN3 Missense_Mutation p.P52S 0.32 deleterious(0) benign(0.291) TCGA-BR-4292-01 4 71201047 71201047 C A CABS1 Silent p.T97T 0.22 TCGA-BR-4292-01 4 76842177 76842177 G A NAAA Missense_Mutation p.R256W 0.44 tolerated(0.07) benign(0.005) TCGA-BR-4292-01 4 7776691 7776691 C A AFAP1 Intron 0.24 TCGA-BR-4292-01 4 77817102 77817102 G A SOWAHB Missense_Mutation p.A634V 0.31 tolerated(0.31) possibly_damaging(0.798) TCGA-BR-4292-01 4 79362354 79362354 T - FRAS1 Frame_Shift_Del p.F1858Lfs*17 0.25 TCGA-BR-4292-01 4 79371314 79371314 C T FRAS1 Missense_Mutation p.A2095V 0.29 possibly_damaging(0.754) TCGA-BR-4292-01 4 81122567 81122567 C T PRDM8 Missense_Mutation p.R115C 0.27 deleterious(0) probably_damaging(0.945) TCGA-BR-4292-01 4 81952623 81952623 G A BMP3 Missense_Mutation p.R62Q 0.17 tolerated(0.07) benign(0.067) TCGA-BR-4292-01 4 87754575 87754575 A G SLC10A6 Missense_Mutation p.I127T 0.10 deleterious(0) possibly_damaging(0.877) TCGA-BR-4292-01 4 88091757 88091757 C T KLHL8 Missense_Mutation p.A407T 0.24 deleterious(0.01) probably_damaging(0.993) TCGA-BR-4292-01 4 89388315 89388315 G A HERC5 Silent p.P339P 0.32 TCGA-BR-4292-01 4 96761964 96761964 G T PDHA2 Missense_Mutation p.E221D 0.20 deleterious(0) probably_damaging(0.95) TCGA-BR-4292-01 4 9784659 9784659 G A DRD5 Missense_Mutation p.V336I 0.30 tolerated(0.25) probably_damaging(0.981) TCGA-BR-4292-01 4 99397385 99397385 A T TSPAN5 Missense_Mutation p.N232K 0.15 deleterious(0) possibly_damaging(0.809) TCGA-BR-4292-01 4 9987317 9987317 G A SLC2A9 Missense_Mutation p.R171C 0.28 deleterious(0.01) benign(0.44) TCGA-BR-4292-01 5 113822813 113822813 A - KCNN2 Frame_Shift_Del p.K442Rfs*2 0.32 TCGA-BR-4292-01 5 115152216 115152216 G A CDO1 5'UTR 0.38 TCGA-BR-4292-01 5 115299005 115299005 C T AQPEP Missense_Mutation p.R231C 0.35 deleterious(0.03) probably_damaging(0.91) TCGA-BR-4292-01 5 121776408 121776408 G A SNCAIP Missense_Mutation p.V461I 0.36 deleterious(0.02) possibly_damaging(0.507) TCGA-BR-4292-01 5 122941058 122941058 T C CSNK1G3 Splice_Site p.X438_splice 0.30 TCGA-BR-4292-01 5 123983851 123983851 T A ZNF608 Silent p.P742P 0.29 TCGA-BR-4292-01 5 123984642 123984642 G A ZNF608 Nonsense_Mutation p.R479* 0.32 TCGA-BR-4292-01 5 125939712 125939712 A - PHAX Frame_Shift_Del p.M185Wfs*23 0.27 TCGA-BR-4292-01 5 126874760 126874760 G A PRRC1 Missense_Mutation p.R317H 0.32 deleterious(0.02) probably_damaging(0.91) TCGA-BR-4292-01 5 131543466 131543466 C T P4HA2 Missense_Mutation p.V339I 0.32 tolerated(0.18) probably_damaging(0.996) TCGA-BR-4292-01 5 131606656 131606656 C T PDLIM4 Missense_Mutation p.P126S 0.20 tolerated(0.91) benign(0.002) TCGA-BR-4292-01 5 131953826 131953826 C T RAD50 Nonsense_Mutation p.R1077* 0.27 TCGA-BR-4292-01 5 132096640 132096642 CTC - SEPT8 In_Frame_Del p.E380del 0.32 TCGA-BR-4292-01 5 135692750 135692750 G A TRPC7 Missense_Mutation p.A109V 0.30 deleterious(0) probably_damaging(0.984) TCGA-BR-4292-01 5 137278577 137278577 G A FAM13B Nonsense_Mutation p.R837* 0.34 TCGA-BR-4292-01 5 137289904 137289904 G A FAM13B Missense_Mutation p.H535Y 0.34 deleterious(0.01) possibly_damaging(0.597) TCGA-BR-4292-01 5 137420203 137420203 C T WNT8A Missense_Mutation p.T40M 0.36 tolerated(0.13) probably_damaging(0.923) TCGA-BR-4292-01 5 139251390 139251390 C T NRG2 Missense_Mutation p.R343Q 0.23 tolerated(0.07) probably_damaging(0.949) TCGA-BR-4292-01 5 139892956 139892957 - A ANKHD1 Frame_Shift_Ins p.C1406Mfs*12 0.27 TCGA-BR-4292-01 5 139905920 139905920 G C ANKHD1 Missense_Mutation p.S1611T 0.04 probably_damaging(0.914) TCGA-BR-4292-01 5 140166534 140166534 C T PCDHA1 Missense_Mutation p.P220L 0.27 deleterious_low_confidence(0.01) probably_damaging(0.992) TCGA-BR-4292-01 5 140167731 140167731 G A PCDHA1 Missense_Mutation p.R619H 0.09 tolerated_low_confidence(0.09) benign(0.139) TCGA-BR-4292-01 5 140182842 140182842 C T PCDHA3 Missense_Mutation p.T687M 0.35 tolerated_low_confidence(0.07) benign(0.014) TCGA-BR-4292-01 5 140202765 140202765 C A PCDHA5 Missense_Mutation p.P469T 0.26 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-BR-4292-01 5 140209889 140209889 C T PCDHA6 Missense_Mutation p.T738M 0.40 tolerated_low_confidence(0.22) benign(0.116) TCGA-BR-4292-01 5 140215576 140215576 C T PCDHA7 Silent p.S536S 0.31 TCGA-BR-4292-01 5 140255609 140255609 A - PCDHA12 Frame_Shift_Del p.D187Ifs*8 0.12 TCGA-BR-4292-01 5 140263515 140263515 C T PCDHA13 Silent p.F554F 0.39 TCGA-BR-4292-01 5 140264043 140264043 C T PCDHA13 Silent p.G730G 0.21 TCGA-BR-4292-01 5 140306840 140306840 A G PCDHAC1 Silent p.S121S 0.33 TCGA-BR-4292-01 5 140553146 140553146 C T PCDHB7 Missense_Mutation p.R244W 0.35 deleterious_low_confidence(0) benign(0.071) TCGA-BR-4292-01 5 140554034 140554034 G A PCDHB7 Missense_Mutation p.A540T 0.32 deleterious_low_confidence(0.02) possibly_damaging(0.731) TCGA-BR-4292-01 5 140564007 140564007 C T PCDHB16 Missense_Mutation p.R625C 0.31 deleterious_low_confidence(0.01) probably_damaging(0.927) TCGA-BR-4292-01 5 140719254 140719254 C T PCDHGA2 Missense_Mutation p.A239V 0.26 deleterious_low_confidence(0.02) benign(0.159) TCGA-BR-4292-01 5 140768432 140768432 G A PCDHGB4 Silent p.A327A 0.22 TCGA-BR-4292-01 5 142437258 142437258 G A ARHGAP26 Missense_Mutation p.R495Q 0.28 tolerated(0.06) benign(0.408) TCGA-BR-4292-01 5 142513670 142513670 C T ARHGAP26 Nonsense_Mutation p.Q613* 0.33 TCGA-BR-4292-01 5 145393517 145393517 C T SH3RF2 Missense_Mutation p.R318C 0.34 deleterious(0) possibly_damaging(0.893) TCGA-BR-4292-01 5 145508683 145508683 T - LARS Splice_Site p.X877_splice 0.29 TCGA-BR-4292-01 5 1466903 1466903 G A LPCAT1 Nonsense_Mutation p.R461* 0.11 TCGA-BR-4292-01 5 146778698 146778698 C T DPYSL3 Missense_Mutation p.V524I 0.37 deleterious(0.04) benign(0.024) TCGA-BR-4292-01 5 147261660 147261660 C A SCGB3A2 3'UTR 0.21 TCGA-BR-4292-01 5 14769138 14769138 C T ANKH Missense_Mutation p.V87I 0.34 tolerated(0.29) benign(0.012) TCGA-BR-4292-01 5 148577904 148577904 G A ABLIM3 Missense_Mutation p.E92K 0.32 deleterious(0.02) probably_damaging(0.967) TCGA-BR-4292-01 5 149263008 149263008 G A PDE6A Missense_Mutation p.R707W 0.37 tolerated(0.05) probably_damaging(0.998) TCGA-BR-4292-01 5 150948236 150948236 T G FAT2 Missense_Mutation p.E86A 0.28 benign(0.175) TCGA-BR-4292-01 5 158526597 158526597 T - EBF1 5'UTR 0.57 TCGA-BR-4292-01 5 158695881 158695881 T - UBLCP1 5'UTR 0.35 TCGA-BR-4292-01 5 159399008 159399008 G A ADRA1B Missense_Mutation p.A358T 0.27 deleterious(0) probably_damaging(0.945) TCGA-BR-4292-01 5 159656469 159656469 A G FABP6 Intron 0.28 TCGA-BR-4292-01 5 159830251 159830251 G C SLU7 3'UTR 0.35 TCGA-BR-4292-01 5 16474783 16474783 T C FAM134B 3'UTR 0.16 TCGA-BR-4292-01 5 167957486 167957486 G A FBLL1 Missense_Mutation p.R326Q 0.35 tolerated(0.07) probably_damaging(0.968) TCGA-BR-4292-01 5 169129410 169129410 G A DOCK2 Silent p.A454A 0.21 TCGA-BR-4292-01 5 170236617 170236617 G A GABRP Missense_Mutation p.R293H 0.34 deleterious(0) possibly_damaging(0.906) TCGA-BR-4292-01 5 171614943 171614943 A G STK10 Missense_Mutation p.V35A 0.31 tolerated(0.26) possibly_damaging(0.583) TCGA-BR-4292-01 5 172513563 172513563 G A CREBRF Silent p.S23S 0.38 TCGA-BR-4292-01 5 173491266 173491266 C T NSG2 Missense_Mutation p.P54L 0.33 tolerated(0.58) benign(0.037) TCGA-BR-4292-01 5 17354296 17354296 G A CTD-2139B15.2 RNA 0.29 TCGA-BR-4292-01 5 175774483 175774483 C T KIAA1191 3'UTR 0.30 TCGA-BR-4292-01 5 176310832 176310832 C T HK3 Silent p.T664T 0.33 TCGA-BR-4292-01 5 176722543 176722543 A - NSD1 3'UTR 0.44 TCGA-BR-4292-01 5 179021923 179021923 A T RUFY1 Missense_Mutation p.K490N 0.31 deleterious(0) probably_damaging(0.995) TCGA-BR-4292-01 5 179229020 179229020 C T MGAT4B Missense_Mutation p.R31H 0.24 tolerated_low_confidence(0.2) benign(0.019) TCGA-BR-4292-01 5 179994114 179994114 T - CNOT6 Frame_Shift_Del p.L251Wfs*2 0.26 TCGA-BR-4292-01 5 1878859 1878859 C T IRX4 Missense_Mutation p.D262N 0.18 deleterious(0.03) probably_damaging(0.99) TCGA-BR-4292-01 5 24491905 24491906 - T CDH10 Frame_Shift_Ins p.N552Kfs*5 0.25 TCGA-BR-4292-01 5 2752844 2752844 G A C5orf38 Silent p.A103A 0.29 TCGA-BR-4292-01 5 31294199 31294199 A - CDH6 Frame_Shift_Del p.K121Nfs*11 0.31 TCGA-BR-4292-01 5 32230244 32230244 T C MTMR12 Silent p.L628L 0.30 TCGA-BR-4292-01 5 32404048 32404048 G A ZFR Missense_Mutation p.A396V 0.40 deleterious(0) unknown(0) TCGA-BR-4292-01 5 32404160 32404161 - T ZFR Frame_Shift_Ins p.E359Rfs*27 0.27 TCGA-BR-4292-01 5 34824014 34824014 C T RAI14 Silent p.N692N 0.13 TCGA-BR-4292-01 5 39124356 39124357 - A FYB Frame_Shift_Ins p.L700Ffs*6 0.24 TCGA-BR-4292-01 5 41009422 41009422 G A MROH2B Missense_Mutation p.T1127I 0.31 tolerated(0.19) benign(0.003) TCGA-BR-4292-01 5 41181535 41181535 A - C6 Frame_Shift_Del p.Y285Ifs*35 0.27 TCGA-BR-4292-01 5 43280635 43280635 G A NIM1K Missense_Mutation p.R372Q 0.13 tolerated(1) benign(0.004) TCGA-BR-4292-01 5 488455 488455 C T SLC9A3 Silent p.S217S 0.39 TCGA-BR-4292-01 5 52096812 52096812 G A PELO Missense_Mutation p.R195H 0.42 deleterious(0.01) benign(0.262) TCGA-BR-4292-01 5 63256991 63256991 C T HTR1A Missense_Mutation p.A186T 0.46 tolerated(0.47) benign(0.377) TCGA-BR-4292-01 5 65473381 65473381 C T SREK1 Silent p.D540D 0.40 TCGA-BR-4292-01 5 71756348 71756348 G A ZNF366 Missense_Mutation p.R326C 0.43 deleterious(0) probably_damaging(1) TCGA-BR-4292-01 5 72173171 72173174 TAAG - TNPO1 Splice_Site p.X307_splice 0.32 TCGA-BR-4292-01 5 72377779 72377779 C T FCHO2 Missense_Mutation p.T717M 0.35 deleterious(0.03) benign(0.12) TCGA-BR-4292-01 5 72868406 72868406 C T UTP15 Silent p.L256L 0.36 TCGA-BR-4292-01 5 7709334 7709334 G A ADCY2 Missense_Mutation p.R471Q 0.31 tolerated(0.64) benign(0.007) TCGA-BR-4292-01 5 78697766 78697766 G A HOMER1 Nonsense_Mutation p.Q214* 0.20 TCGA-BR-4292-01 5 79030050 79030050 A - CMYA5 Frame_Shift_Del p.K1823Rfs*17 0.27 TCGA-BR-4292-01 5 79970915 79970916 AA - MSH3 Frame_Shift_Del p.K383Gfs*20 0.29 TCGA-BR-4292-01 5 80667576 80667576 C T ACOT12 Missense_Mutation p.S84N 0.23 deleterious(0) probably_damaging(1) TCGA-BR-4292-01 5 86675571 86675571 A - RASA1 Frame_Shift_Del p.N838Mfs*4 0.28 TCGA-BR-4292-01 5 89701581 89701581 T - CETN3 Frame_Shift_Del p.A64Lfs*4 0.24 TCGA-BR-4292-01 5 89923028 89923028 G A GPR98 Missense_Mutation p.V225I 0.50 possibly_damaging(0.739) TCGA-BR-4292-01 5 90015894 90015894 G A GPR98 Silent p.T3159T 0.26 TCGA-BR-4292-01 5 92923762 92923762 G A NR2F1 Silent p.S201S 0.41 TCGA-BR-4292-01 6 105405010 105405010 C T LIN28B 5'UTR 0.37 TCGA-BR-4292-01 6 106634539 106634539 T - ATG5 Frame_Shift_Del p.K235Rfs*4 0.11 TCGA-BR-4292-01 6 109294600 109294600 A - ARMC2 Frame_Shift_Del p.N831Tfs*19 0.29 TCGA-BR-4292-01 6 117674208 117674208 C A ROS1 Missense_Mutation p.K1422N 0.09 tolerated(0.12) benign(0.002) TCGA-BR-4292-01 6 121768495 121768495 G A GJA1 Missense_Mutation p.A168T 0.31 deleterious(0.05) benign(0.324) TCGA-BR-4292-01 6 128318068 128318068 G T PTPRK Missense_Mutation p.N915K 0.17 deleterious(0) probably_damaging(0.998) TCGA-BR-4292-01 6 129959603 129959603 T - ARHGAP18 Frame_Shift_Del p.N163Tfs*55 0.31 TCGA-BR-4292-01 6 129959703 129959703 G T ARHGAP18 Missense_Mutation p.P130T 0.28 tolerated(0.3) benign(0.14) TCGA-BR-4292-01 6 13620991 13620992 - A NOL7 Frame_Shift_Ins p.Q239Tfs*7 0.33 TCGA-BR-4292-01 6 139097330 139097330 A - CCDC28A Frame_Shift_Del p.N117Mfs*5 0.38 TCGA-BR-4292-01 6 139226190 139226190 C T REPS1 3'UTR 0.35 TCGA-BR-4292-01 6 145948796 145948796 A G EPM2A Missense_Mutation p.L251P 0.10 deleterious(0) probably_damaging(0.987) TCGA-BR-4292-01 6 146262872 146262872 G A SHPRH Missense_Mutation p.R793C 0.25 deleterious(0) possibly_damaging(0.544) TCGA-BR-4292-01 6 146275964 146275964 T - SHPRH Frame_Shift_Del p.E166Nfs*3 0.29 TCGA-BR-4292-01 6 150290280 150290280 G T ULBP1 Nonsense_Mutation p.G137* 0.32 TCGA-BR-4292-01 6 151785658 151785658 A T C6orf211 Missense_Mutation p.I155F 0.14 deleterious(0) benign(0.345) TCGA-BR-4292-01 6 152469223 152469223 C A SYNE1 Missense_Mutation p.Q8311H 0.37 benign(0.289) TCGA-BR-4292-01 6 15496722 15496722 G - JARID2 Frame_Shift_Del p.R425Gfs*36 0.36 TCGA-BR-4292-01 6 15520516 15520516 T A JARID2 3'UTR 0.32 TCGA-BR-4292-01 6 155561718 155561718 G A TIAM2 Missense_Mutation p.G1075S 0.35 tolerated(0.87) benign(0.001) TCGA-BR-4292-01 6 155575539 155575540 CC - TIAM2 Intron 0.31 TCGA-BR-4292-01 6 158492720 158492720 G T SYNJ2 Missense_Mutation p.S676I 0.39 deleterious(0) probably_damaging(0.936) TCGA-BR-4292-01 6 160199806 160199806 C T ACAT2 Missense_Mutation p.A380V 0.36 deleterious(0.02) benign(0.227) TCGA-BR-4292-01 6 161027563 161027563 C T LPA Missense_Mutation p.V911I 0.31 tolerated(0.55) probably_damaging(0.952) TCGA-BR-4292-01 6 161469776 161469776 A - MAP3K4 Frame_Shift_Del p.N160Mfs*8 0.28 TCGA-BR-4292-01 6 165706750 165706750 G A C6orf118 Intron 0.35 TCGA-BR-4292-01 6 170104189 170104190 - A PHF10 Intron 0.52 TCGA-BR-4292-01 6 170118937 170118937 T C PHF10 Missense_Mutation p.Q91R 0.28 deleterious(0.01) possibly_damaging(0.642) TCGA-BR-4292-01 6 24503644 24503644 G T ALDH5A1 Missense_Mutation p.A198S 0.45 tolerated(0.22) benign(0.211) TCGA-BR-4292-01 6 24596507 24596508 - C KIAA0319 Frame_Shift_Ins p.D132Gfs*4 0.31 TCGA-BR-4292-01 6 25862609 25862609 G A SLC17A3 Missense_Mutation p.T52M 0.33 tolerated(0.32) benign(0.013) TCGA-BR-4292-01 6 26598515 26598515 C T ABT1 Missense_Mutation p.S154F 0.27 tolerated(0.17) possibly_damaging(0.739) TCGA-BR-4292-01 6 26846599 26846599 A T GUSBP2 RNA 0.23 TCGA-BR-4292-01 6 27419587 27419587 C T ZNF184 Missense_Mutation p.R584Q 0.35 deleterious(0) probably_damaging(0.97) TCGA-BR-4292-01 6 27839989 27839989 G A HIST1H3I Silent p.G35G 0.18 TCGA-BR-4292-01 6 28251732 28251732 C T PGBD1 Missense_Mutation p.R48W 0.25 deleterious_low_confidence(0) probably_damaging(1) TCGA-BR-4292-01 6 29342750 29342751 - A OR12D3 Frame_Shift_Ins p.L105Ffs*15 0.24 TCGA-BR-4292-01 6 30154048 30154048 C T TRIM26 Missense_Mutation p.D409N 0.34 tolerated(0.33) unknown(0) TCGA-BR-4292-01 6 30554313 30554313 A G ABCF1 Missense_Mutation p.M650V 0.31 deleterious(0) benign(0.044) TCGA-BR-4292-01 6 30557686 30557686 G A ABCF1 Missense_Mutation p.R723H 0.40 deleterious(0.01) probably_damaging(0.931) TCGA-BR-4292-01 6 30675170 30675172 CTT - MDC1 In_Frame_Del p.K1025del 0.36 TCGA-BR-4292-01 6 30879001 30879001 G T GTF2H4 Silent p.P209P 0.33 TCGA-BR-4292-01 6 3154798 3154798 G A TUBB2A Missense_Mutation p.R213C 0.40 deleterious_low_confidence(0.01) benign(0.028) TCGA-BR-4292-01 6 31590652 31590652 A C PRRC2A Missense_Mutation p.K29T 0.35 unknown(0) TCGA-BR-4292-01 6 31597497 31597497 G A PRRC2A Missense_Mutation p.R710Q 0.24 benign(0.238) TCGA-BR-4292-01 6 31731318 31731318 G A SAPCD1 Missense_Mutation p.G81R 0.22 deleterious(0.03) probably_damaging(0.929) TCGA-BR-4292-01 6 31833884 31833884 G A SLC44A4 Missense_Mutation p.S418L 0.32 tolerated(0.49) benign(0.386) TCGA-BR-4292-01 6 31926931 31926931 C T SKIV2L 5'UTR 0.38 TCGA-BR-4292-01 6 31975223 31975224 - T C4A 3'Flank 0.24 TCGA-BR-4292-01 6 32135153 32135153 G A EGFL8 Missense_Mutation p.A210T 0.34 tolerated(0.44) benign(0.001) TCGA-BR-4292-01 6 32151892 32151892 G A RNF5 3'Flank 0.30 TCGA-BR-4292-01 6 32411064 32411064 T C HLA-DRA Missense_Mutation p.V144A 0.26 deleterious(0.01) probably_damaging(0.991) TCGA-BR-4292-01 6 32782287 32782287 C T HLA-DOB Silent p.G151G 0.36 TCGA-BR-4292-01 6 33144778 33144778 G A COL11A2 Silent p.D601D 0.45 TCGA-BR-4292-01 6 33245751 33245751 G A B3GALT4 Silent p.L185L 0.35 TCGA-BR-4292-01 6 34824039 34824039 C T UHRF1BP1 Missense_Mutation p.R382C 0.26 deleterious(0.03) probably_damaging(0.932) TCGA-BR-4292-01 6 34825149 34825149 T C UHRF1BP1 Missense_Mutation p.L492P 0.25 deleterious(0) probably_damaging(0.986) TCGA-BR-4292-01 6 37619917 37619917 G A MDGA1 Silent p.P394P 0.26 TCGA-BR-4292-01 6 38120107 38120107 T C ZFAND3 Missense_Mutation p.V209A 0.24 deleterious(0) probably_damaging(0.987) TCGA-BR-4292-01 6 38840746 38840746 C T DNAH8 Silent p.S2217S 0.32 TCGA-BR-4292-01 6 42633221 42633221 A G UBR2 Missense_Mutation p.Q1258R 0.32 tolerated(0.3) benign(0) TCGA-BR-4292-01 6 42796237 42796237 G A GLTSCR1L Missense_Mutation p.D56N 0.30 tolerated(0.11) possibly_damaging(0.576) TCGA-BR-4292-01 6 42890866 42890866 C - PTCRA Frame_Shift_Del p.P55Lfs*113 0.25 TCGA-BR-4292-01 6 43030725 43030725 G A KLC4 Missense_Mutation p.R128Q 0.35 deleterious(0.04) benign(0.061) TCGA-BR-4292-01 6 43152490 43152490 G A CUL9 Missense_Mutation p.V148M 0.33 deleterious(0.01) probably_damaging(0.996) TCGA-BR-4292-01 6 46656522 46656522 C T TDRD6 Silent p.S219S 0.12 TCGA-BR-4292-01 6 46677134 46677134 T - PLA2G7 Frame_Shift_Del p.I267* 0.22 TCGA-BR-4292-01 6 47846191 47846191 G T PTCHD4 Missense_Mutation p.L797M 0.29 tolerated(0.15) probably_damaging(0.995) TCGA-BR-4292-01 6 49459995 49459995 T - CENPQ 3'UTR 0.36 TCGA-BR-4292-01 6 56919147 56919147 G A KIAA1586 Missense_Mutation p.R617H 0.30 tolerated(0.11) probably_damaging(0.965) TCGA-BR-4292-01 6 637806 637806 G A EXOC2 Nonsense_Mutation p.R5* 0.34 TCGA-BR-4292-01 6 66045023 66045023 C A EYS Missense_Mutation p.C539F 0.38 tolerated(0.06) benign(0.102) TCGA-BR-4292-01 6 69640508 69640508 A - BAI3 Frame_Shift_Del p.R274Gfs*57 0.22 TCGA-BR-4292-01 6 71011710 71011710 G A COL9A1 Missense_Mutation p.R28C 0.40 unknown(0) TCGA-BR-4292-01 6 72678706 72678706 C T RIMS1 Missense_Mutation p.A62V 0.37 tolerated(0.27) benign(0.002) TCGA-BR-4292-01 6 73902416 73902416 T C KCNQ5 Splice_Site p.X631_splice 0.08 TCGA-BR-4292-01 6 75797321 75797321 G T COL12A1 Missense_Mutation p.S3051R 0.25 probably_damaging(0.993) TCGA-BR-4292-01 6 75814988 75814988 A G COL12A1 Silent p.P2733P 0.12 TCGA-BR-4292-01 6 7862635 7862635 G A BMP6 Missense_Mutation p.V370M 0.22 deleterious(0.01) possibly_damaging(0.733) TCGA-BR-4292-01 6 80409424 80409424 T - SH3BGRL2 3'UTR 0.67 TCGA-BR-4292-01 6 86223561 86223561 T C SNX14 Silent p.K870K 0.29 TCGA-BR-4292-01 6 88854592 88854593 - T CNR1 Frame_Shift_Ins p.N134Kfs*43 0.23 TCGA-BR-4292-01 6 90340559 90340559 G A ANKRD6 Missense_Mutation p.A674T 0.23 tolerated(0.19) benign(0.071) TCGA-BR-4292-01 6 90402442 90402442 G A MDN1 Missense_Mutation p.A3436V 0.24 benign(0.002) TCGA-BR-4292-01 6 90415853 90415853 A - MDN1 Frame_Shift_Del p.F2691Lfs*7 0.24 TCGA-BR-4292-01 6 90642584 90642584 G A BACH2 Missense_Mutation p.S690L 0.24 deleterious(0.02) possibly_damaging(0.527) TCGA-BR-4292-01 6 93967182 93967182 T C EPHA7 Missense_Mutation p.R724G 0.24 deleterious(0) probably_damaging(0.999) TCGA-BR-4292-01 6 97587132 97587132 C T KLHL32 Missense_Mutation p.P613S 0.35 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BR-4292-01 6 97711260 97711260 A G MMS22L Missense_Mutation p.V298A 0.30 tolerated(0.11) benign(0.118) TCGA-BR-4292-01 7 100028068 100028068 G - MEPCE Frame_Shift_Del p.G145Afs*11 0.48 TCGA-BR-4292-01 7 100087129 100087129 C T NYAP1 Silent p.T595T 0.23 TCGA-BR-4292-01 7 100218519 100218519 C T TFR2 Silent p.A789A 0.37 TCGA-BR-4292-01 7 100226903 100226903 G A TFR2 Missense_Mutation p.R455W 0.24 deleterious(0.01) benign(0.178) TCGA-BR-4292-01 7 100468258 100468258 C T TRIP6 Missense_Mutation p.R298C 0.35 deleterious(0) probably_damaging(0.993) TCGA-BR-4292-01 7 104753026 104753027 - T KMT2E Frame_Shift_Ins p.L1610Ffs*259 0.31 TCGA-BR-4292-01 7 106508373 106508373 C T PIK3CG Missense_Mutation p.R123C 0.27 tolerated(0.12) benign(0.003) TCGA-BR-4292-01 7 106523539 106523539 C A PIK3CG Silent p.G897G 0.37 TCGA-BR-4292-01 7 107198538 107198538 G A COG5 Silent p.N70N 0.31 TCGA-BR-4292-01 7 111377033 111377033 T C DOCK4 Missense_Mutation p.N1740D 0.18 tolerated(0.28) benign(0.084) TCGA-BR-4292-01 7 114284763 114284763 C T FOXP2 Missense_Mutation p.A363V 0.22 deleterious(0.04) unknown(0) TCGA-BR-4292-01 7 117431604 117431604 T - CTTNBP2 Frame_Shift_Del p.K549Sfs*19 0.31 TCGA-BR-4292-01 7 119914656 119914656 G A KCND2 5'UTR 0.30 TCGA-BR-4292-01 7 123277059 123277059 A - ASB15 3'UTR 0.26 TCGA-BR-4292-01 7 124404720 124404720 G A GPR37 Missense_Mutation p.A104V 0.39 tolerated_low_confidence(0.18) benign(0.003) TCGA-BR-4292-01 7 127669841 127669841 G T LRRC4 Missense_Mutation p.L285I 0.29 deleterious(0.04) probably_damaging(0.99) TCGA-BR-4292-01 7 127732057 127732057 C T SND1 Missense_Mutation p.R894C 0.28 tolerated(0.11) benign(0.095) TCGA-BR-4292-01 7 128475506 128475506 C T FLNC Missense_Mutation p.T160M 0.38 deleterious(0) probably_damaging(0.996) TCGA-BR-4292-01 7 129394908 129394908 G A NRF1 Missense_Mutation p.A467T 0.31 tolerated(0.35) benign(0.001) TCGA-BR-4292-01 7 129658454 129658455 - A ZC3HC1 3'UTR 0.21 TCGA-BR-4292-01 7 129986353 129986353 G A CPA5 Silent p.T9T 0.42 TCGA-BR-4292-01 7 131864546 131864546 A G PLXNA4 Silent p.I1258I 0.35 TCGA-BR-4292-01 7 134871064 134871064 C T WDR91 Missense_Mutation p.G695S 0.42 tolerated(0.91) benign(0.001) TCGA-BR-4292-01 7 135277854 135277854 C T NUP205 Missense_Mutation p.R582C 0.27 deleterious(0.01) probably_damaging(0.959) TCGA-BR-4292-01 7 135301910 135301911 - T NUP205 Frame_Shift_Ins p.D1205* 0.30 TCGA-BR-4292-01 7 137237203 137237203 C A DGKI Missense_Mutation p.A687S 0.33 tolerated(0.11) possibly_damaging(0.81) TCGA-BR-4292-01 7 138522642 138522642 C T KIAA1549 3'UTR 0.27 TCGA-BR-4292-01 7 138554434 138554434 C T KIAA1549 Missense_Mutation p.R1542H 0.24 deleterious(0) probably_damaging(1) TCGA-BR-4292-01 7 138602725 138602725 C T KIAA1549 Silent p.T549T 0.26 TCGA-BR-4292-01 7 138968777 138968777 T C UBN2 Silent p.S1042S 0.35 TCGA-BR-4292-01 7 140158906 140158906 G A MKRN1 Silent p.Y224Y 0.34 TCGA-BR-4292-01 7 140273680 140273680 G T DENND2A Silent p.P458P 0.30 TCGA-BR-4292-01 7 143039045 143039045 G A CLCN1 Missense_Mutation p.V536I 0.21 deleterious(0) probably_damaging(0.995) TCGA-BR-4292-01 7 147914604 147914604 G A CNTNAP2 Missense_Mutation p.V1079I 0.31 tolerated(0.26) benign(0.03) TCGA-BR-4292-01 7 148921287 148921287 G A ZNF282 Missense_Mutation p.E522K 0.29 deleterious(0.04) benign(0.043) TCGA-BR-4292-01 7 148947336 148947336 C T ZNF212 Silent p.T37T 0.34 TCGA-BR-4292-01 7 148951367 148951367 C T ZNF212 Missense_Mutation p.T450M 0.28 deleterious(0) probably_damaging(1) TCGA-BR-4292-01 7 149318362 149318362 C - ZNF767 RNA 0.41 TCGA-BR-4292-01 7 149420936 149420936 G A KRBA1 Missense_Mutation p.R295Q 0.31 tolerated(0.33) benign(0) TCGA-BR-4292-01 7 149522374 149522374 C T SSPO RNA 0.37 TCGA-BR-4292-01 7 150934480 150934480 C T CHPF2 Silent p.T344T 0.33 TCGA-BR-4292-01 7 151135154 151135154 G A CRYGN Silent p.H66H 0.21 TCGA-BR-4292-01 7 151818747 151818747 G A GALNT11 Nonsense_Mutation p.W604* 0.37 TCGA-BR-4292-01 7 151878069 151878070 - G KMT2C Frame_Shift_Ins p.S2293Ifs*5 0.23 TCGA-BR-4292-01 7 151949783 151949784 TA - KMT2C Frame_Shift_Del p.I439Rfs*7 0.18 TCGA-BR-4292-01 7 152139985 152139985 C T AC005631.1 3'Flank 0.34 TCGA-BR-4292-01 7 155436217 155436217 T C AC009403.2 Missense_Mutation p.I16V 0.30 benign(0) TCGA-BR-4292-01 7 156799214 156799214 G A MNX1 Missense_Mutation p.R271C 0.31 deleterious(0) probably_damaging(1) TCGA-BR-4292-01 7 20826480 20826480 T - SP8 5'UTR 0.22 TCGA-BR-4292-01 7 21747335 21747335 C T DNAH11 Nonsense_Mutation p.R2196* 0.34 TCGA-BR-4292-01 7 22197474 22197474 T - RAPGEF5 Frame_Shift_Del p.K366Rfs*22 0.26 TCGA-BR-4292-01 7 23509592 23509592 G A IGF2BP3 Silent p.D46D 0.38 TCGA-BR-4292-01 7 23509763 23509764 - A IGF2BP3 5'UTR 0.27 TCGA-BR-4292-01 7 23811811 23811811 G A STK31 Missense_Mutation p.D627N 0.28 tolerated(0.33) benign(0.165) TCGA-BR-4292-01 7 2418871 2418871 C T EIF3B Nonsense_Mutation p.R779* 0.24 TCGA-BR-4292-01 7 25200833 25200833 T - C7orf31 Frame_Shift_Del p.S120Vfs*9 0.44 TCGA-BR-4292-01 7 2968322 2968323 - G CARD11 Frame_Shift_Ins p.R555Pfs*38 0.24 TCGA-BR-4292-01 7 30185810 30185810 C T MTURN Silent p.S60S 0.26 TCGA-BR-4292-01 7 31890296 31890296 G A PDE1C Silent p.Y330Y 0.32 TCGA-BR-4292-01 7 32526806 32526806 A - LSM5 3'UTR 0.34 TCGA-BR-4292-01 7 33644571 33644572 AG - BBS9 Frame_Shift_Del p.E873Dfs*5 0.16 TCGA-BR-4292-01 7 38398132 38398132 T C TRGV3 Missense_Mutation p.Y112C 0.10 deleterious(0) probably_damaging(0.999) TCGA-BR-4292-01 7 42005174 42005174 C A GLI3 Missense_Mutation p.S1166I 0.34 deleterious(0) probably_damaging(0.997) TCGA-BR-4292-01 7 42012141 42012141 C A GLI3 Missense_Mutation p.G633V 0.35 deleterious(0) probably_damaging(0.999) TCGA-BR-4292-01 7 42064869 42064869 C - GLI3 Frame_Shift_Del p.Q451Sfs*51 0.41 TCGA-BR-4292-01 7 44151800 44151800 T C AEBP1 Silent p.F699F 0.37 TCGA-BR-4292-01 7 44178494 44178494 C - MYL7 3'UTR 0.43 TCGA-BR-4292-01 7 44747227 44747228 - C OGDH Frame_Shift_Ins p.N950Qfs*3 0.28 TCGA-BR-4292-01 7 44806205 44806205 C T ZMIZ2 Silent p.G866G 0.15 TCGA-BR-4292-01 7 45016545 45016545 C T MYO1G Missense_Mutation p.R74Q 0.39 deleterious(0.03) probably_damaging(0.997) TCGA-BR-4292-01 7 48375117 48375117 G T ABCA13 Missense_Mutation p.M3366I 0.23 possibly_damaging(0.843) TCGA-BR-4292-01 7 48411974 48411974 T G ABCA13 Missense_Mutation p.F3671L 0.32 benign(0.376) TCGA-BR-4292-01 7 51097038 51097038 C T COBL Silent p.E585E 0.29 TCGA-BR-4292-01 7 5416526 5416526 G - TNRC18 Frame_Shift_Del p.Q854Nfs*19 0.21 TCGA-BR-4292-01 7 6210230 6210230 G A CYTH3 Silent p.D253D 0.29 TCGA-BR-4292-01 7 70255840 70255840 C T AUTS2 Missense_Mutation p.P1213L 0.15 deleterious(0) probably_damaging(1) TCGA-BR-4292-01 7 74159243 74159243 G A GTF2I Missense_Mutation p.V633I 0.14 tolerated(0.62) benign(0.14) TCGA-BR-4292-01 7 75023589 75023589 C T TRIM73 5'Flank 0.39 TCGA-BR-4292-01 7 75066870 75066870 C T POM121C Missense_Mutation p.A135T 0.29 tolerated(1) benign(0.003) TCGA-BR-4292-01 7 76029799 76029799 G A SRCRB4D Silent p.N93N 0.50 TCGA-BR-4292-01 7 82390067 82390067 G T PCLO Missense_Mutation p.S5059Y 0.47 unknown(0) TCGA-BR-4292-01 7 86522383 86522383 A G KIAA1324L Missense_Mutation p.C907R 0.31 deleterious(0) probably_damaging(0.995) TCGA-BR-4292-01 7 872217 872217 C T SUN1 Missense_Mutation p.T19M 0.50 deleterious(0) possibly_damaging(0.828) TCGA-BR-4292-01 7 90894471 90894471 G T FZD1 Silent p.P92P 0.47 TCGA-BR-4292-01 7 91503750 91503750 C T MTERF Missense_Mutation p.V120M 0.36 tolerated(0.06) benign(0.13) TCGA-BR-4292-01 7 94054966 94054966 C T COL1A2 Silent p.P942P 0.25 TCGA-BR-4292-01 7 96639132 96639132 C T DLX6 Missense_Mutation p.R219C 0.29 deleterious(0) probably_damaging(0.987) TCGA-BR-4292-01 7 98581030 98581030 C T TRRAP Silent p.D2983D 0.22 TCGA-BR-4292-01 7 99159544 99159544 G A ZNF655 Intron 0.29 TCGA-BR-4292-01 7 99654966 99654966 G A ZSCAN21 Missense_Mutation p.A113T 0.29 deleterious(0.01) probably_damaging(0.992) TCGA-BR-4292-01 8 103289349 103289349 T - UBR5 Frame_Shift_Del p.E2121Kfs*28 0.24 TCGA-BR-4292-01 8 103573152 103573152 C T ODF1 3'UTR 0.21 TCGA-BR-4292-01 8 104427572 104427572 T C DCAF13 Silent p.T118T 0.20 TCGA-BR-4292-01 8 104897787 104897787 C T RIMS2 Silent p.Y320Y 0.16 TCGA-BR-4292-01 8 104922390 104922390 T G RIMS2 Missense_Mutation p.H551Q 0.19 tolerated_low_confidence(0.15) benign(0.071) TCGA-BR-4292-01 8 104927779 104927779 A - RIMS2 Frame_Shift_Del p.G626Efs*3 0.24 TCGA-BR-4292-01 8 105367351 105367351 A - DCSTAMP Frame_Shift_Del p.R428Dfs*13 0.25 TCGA-BR-4292-01 8 10587873 10587873 G A SOX7 Missense_Mutation p.S24L 0.23 tolerated(0.22) benign(0.114) TCGA-BR-4292-01 8 107691480 107691480 G A OXR1 Missense_Mutation p.R89Q 0.14 deleterious(0) probably_damaging(0.999) TCGA-BR-4292-01 8 110476637 110476637 T - PKHD1L1 Frame_Shift_Del p.F2527Lfs*2 0.14 TCGA-BR-4292-01 8 11058385 11058385 C T XKR6 Missense_Mutation p.R155H 0.22 tolerated(0.24) benign(0.003) TCGA-BR-4292-01 8 11157593 11157593 A G MTMR9 Missense_Mutation p.E118G 0.18 tolerated(0.37) benign(0.065) TCGA-BR-4292-01 8 11301555 11301555 C T FAM167A Nonsense_Mutation p.W122* 0.18 TCGA-BR-4292-01 8 113301668 113301668 C T CSMD3 Missense_Mutation p.R3025H 0.15 tolerated(0.09) benign(0.044) TCGA-BR-4292-01 8 113314034 113314034 T A CSMD3 Missense_Mutation p.T2810S 0.24 tolerated(0.06) benign(0.113) TCGA-BR-4292-01 8 113702263 113702263 A C CSMD3 Missense_Mutation p.S663R 0.04 deleterious(0) probably_damaging(0.998) TCGA-BR-4292-01 8 116617110 116617110 T C TRPS1 Silent p.E362E 0.14 TCGA-BR-4292-01 8 117866524 117866524 G A RAD21 Missense_Mutation p.S374F 0.19 deleterious(0.01) possibly_damaging(0.898) TCGA-BR-4292-01 8 117950593 117950593 C T AARD Silent p.F37F 0.15 TCGA-BR-4292-01 8 120583061 120583061 G A ENPP2 Nonsense_Mutation p.R653* 0.13 TCGA-BR-4292-01 8 120754889 120754889 C T TAF2 Silent p.S1074S 0.12 TCGA-BR-4292-01 8 120865444 120865444 C T DSCC1 Missense_Mutation p.R65H 0.19 deleterious(0) probably_damaging(0.997) TCGA-BR-4292-01 8 124335285 124335285 T A ATAD2 Nonsense_Mutation p.K1342* 0.16 TCGA-BR-4292-01 8 124707927 124707927 C T ANXA13 Splice_Site p.X172_splice 0.17 TCGA-BR-4292-01 8 125131185 125131185 A T FER1L6 Missense_Mutation p.N1797I 0.27 deleterious(0) probably_damaging(0.954) TCGA-BR-4292-01 8 126079934 126079934 C T KIAA0196 Missense_Mutation p.R393H 0.13 deleterious(0.04) probably_damaging(0.994) TCGA-BR-4292-01 8 131797706 131797706 G A ADCY8 Nonsense_Mutation p.R1026* 0.18 TCGA-BR-4292-01 8 131848567 131848567 G A ADCY8 Silent p.Y877Y 0.24 TCGA-BR-4292-01 8 133008660 133008660 T G EFR3A Missense_Mutation p.D691E 0.10 tolerated(0.1) benign(0.073) TCGA-BR-4292-01 8 133141389 133141389 C T KCNQ3 3'UTR 0.29 TCGA-BR-4292-01 8 133894824 133894824 G A TG Missense_Mutation p.A286T 0.05 deleterious(0.02) probably_damaging(0.975) TCGA-BR-4292-01 8 134237661 134237661 C T WISP1 Silent p.H213H 0.18 TCGA-BR-4292-01 8 139820047 139820047 C A COL22A1 Missense_Mutation p.M486I 0.21 unknown(0) TCGA-BR-4292-01 8 139890011 139890011 G A COL22A1 Missense_Mutation p.R214W 0.20 unknown(0) TCGA-BR-4292-01 8 141753359 141753359 G A PTK2 Nonsense_Mutation p.R569* 0.21 TCGA-BR-4292-01 8 142176464 142176464 G A DENND3 Missense_Mutation p.A497T 0.18 tolerated(0.78) benign(0.001) TCGA-BR-4292-01 8 142517187 142517187 G A MROH5 Silent p.A21A 0.08 TCGA-BR-4292-01 8 144295734 144295734 C A GPIHBP1 Missense_Mutation p.D30E 0.29 tolerated(0.36) benign(0.002) TCGA-BR-4292-01 8 144375210 144375210 C T ZNF696 Silent p.S13S 0.14 TCGA-BR-4292-01 8 144941617 144941617 G A EPPK1 Silent p.A1935A 0.31 TCGA-BR-4292-01 8 144998442 144998442 C T PLEC Silent p.A2022A 0.42 TCGA-BR-4292-01 8 145583577 145583577 G A SLC52A2 Missense_Mutation p.R142H 0.20 tolerated(0.14) benign(0) TCGA-BR-4292-01 8 145621823 145621823 C A CPSF1 Missense_Mutation p.G939V 0.06 deleterious(0) probably_damaging(0.951) TCGA-BR-4292-01 8 145999196 145999196 G A ZNF34 Nonsense_Mutation p.R380* 0.19 TCGA-BR-4292-01 8 146225011 146225011 G T ZNF252P-AS1 5'Flank 0.36 TCGA-BR-4292-01 8 17513478 17513479 - T MTUS1 Frame_Shift_Ins p.T1001Nfs*8 0.16 TCGA-BR-4292-01 8 18258413 18258413 T C NAT2 3'UTR 0.21 TCGA-BR-4292-01 8 192901 192901 C T ZNF596 Silent p.F9F 0.15 TCGA-BR-4292-01 8 21929867 21929867 G A DMTN Missense_Mutation p.R212Q 0.18 tolerated(0.16) benign(0.01) TCGA-BR-4292-01 8 21985180 21985180 G A HR Missense_Mutation p.R259W 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.677) TCGA-BR-4292-01 8 23538611 23538611 G A NKX3-1 3'UTR 0.21 TCGA-BR-4292-01 8 23538896 23538896 T C NKX3-1 Silent p.R181R 0.18 TCGA-BR-4292-01 8 24256965 24256965 C A ADAMDEC1 Missense_Mutation p.P330Q 0.15 deleterious(0.01) possibly_damaging(0.702) TCGA-BR-4292-01 8 24771893 24771893 G A NEFM Missense_Mutation p.R196H 0.15 deleterious(0.02) unknown(0) TCGA-BR-4292-01 8 25246735 25246735 G A DOCK5 Silent p.S1420S 0.20 TCGA-BR-4292-01 8 26365705 26365705 C T PNMA2 Silent p.T189T 0.12 TCGA-BR-4292-01 8 26513294 26513294 C T DPYSL2 3'UTR 0.19 TCGA-BR-4292-01 8 27297938 27297938 C T PTK2B Silent p.T673T 0.06 TCGA-BR-4292-01 8 27362600 27362600 G A EPHX2 Missense_Mutation p.M158I 0.10 tolerated(0.26) benign(0.002) TCGA-BR-4292-01 8 28574843 28574843 G A EXTL3 Missense_Mutation p.E423K 0.17 tolerated(0.77) benign(0.016) TCGA-BR-4292-01 8 29195944 29195944 G A DUSP4 Silent p.D218D 0.14 TCGA-BR-4292-01 8 30999110 30999110 G A WRN Silent p.T1044T 0.15 TCGA-BR-4292-01 8 33246853 33246853 A - FUT10 Frame_Shift_Del p.F280Lfs*18 0.15 TCGA-BR-4292-01 8 37689008 37689008 C T GPR124 Nonsense_Mutation p.Q334* 0.12 TCGA-BR-4292-01 8 37702376 37702376 C T BRF2 Missense_Mutation p.G298S 0.19 tolerated(0.08) benign(0.01) TCGA-BR-4292-01 8 38066655 38066655 G A BAG4 Missense_Mutation p.G253D 0.12 tolerated(0.39) benign(0.045) TCGA-BR-4292-01 8 38835575 38835575 C T HTRA4 Missense_Mutation p.A292V 0.27 deleterious(0.01) possibly_damaging(0.841) TCGA-BR-4292-01 8 400034 400034 C T FBXO25 Silent p.G142G 0.19 TCGA-BR-4292-01 8 42176093 42176093 G A IKBKB Missense_Mutation p.A422T 0.19 tolerated(0.06) benign(0.003) TCGA-BR-4292-01 8 42828458 42828458 C T HOOK3 Silent p.S383S 0.21 TCGA-BR-4292-01 8 48887498 48887498 G A MCM4 Missense_Mutation p.V781M 0.14 deleterious(0) probably_damaging(0.945) TCGA-BR-4292-01 8 52321118 52321118 C T PXDNL Silent p.L1022L 0.16 TCGA-BR-4292-01 8 52321164 52321164 G A PXDNL Missense_Mutation p.A1007V 0.25 deleterious(0) probably_damaging(0.989) TCGA-BR-4292-01 8 53055565 53055565 T - ST18 Frame_Shift_Del p.K698Sfs*24 0.24 TCGA-BR-4292-01 8 55370898 55370898 G A SOX17 Missense_Mutation p.R67H 0.18 deleterious(0) possibly_damaging(0.662) TCGA-BR-4292-01 8 56015724 56015724 G A XKR4 Missense_Mutation p.A226T 0.24 tolerated(0.34) benign(0) TCGA-BR-4292-01 8 64122306 64122306 T C YTHDF3 3'UTR 0.20 TCGA-BR-4292-01 8 66639133 66639133 G T PDE7A Missense_Mutation p.F299L 0.22 tolerated(1) probably_damaging(0.967) TCGA-BR-4292-01 8 67405939 67405939 T C C8orf46 Missense_Mutation p.V19A 0.17 deleterious(0) probably_damaging(0.971) TCGA-BR-4292-01 8 67786740 67786741 - T MCMDC2 Intron 0.17 TCGA-BR-4292-01 8 67998286 67998286 C T CSPP1 Missense_Mutation p.R118W 0.17 deleterious(0) possibly_damaging(0.888) TCGA-BR-4292-01 8 68989660 68989660 T A PREX2 Missense_Mutation p.M533K 0.16 deleterious(0.04) benign(0.084) TCGA-BR-4292-01 8 69017427 69017427 C T PREX2 Intron 0.19 TCGA-BR-4292-01 8 69046300 69046300 A G PREX2 Missense_Mutation p.E1258G 0.20 tolerated(0.08) benign(0.212) TCGA-BR-4292-01 8 69046345 69046345 C T PREX2 Missense_Mutation p.A1273V 0.20 deleterious(0) benign(0.411) TCGA-BR-4292-01 8 69351816 69351816 A G C8orf34 Missense_Mutation p.N137S 0.28 tolerated(0.71) benign(0.02) TCGA-BR-4292-01 8 70501233 70501233 C T SULF1 Silent p.N197N 0.17 TCGA-BR-4292-01 8 70517125 70517125 C T SULF1 Silent p.C445C 0.14 TCGA-BR-4292-01 8 70536319 70536319 A G SULF1 Silent p.E579E 0.08 TCGA-BR-4292-01 8 72229848 72229848 G A EYA1 Silent p.S165S 0.20 TCGA-BR-4292-01 8 7340218 7340218 T C DEFB106B Missense_Mutation p.N36D 0.28 tolerated(0.38) benign(0.009) TCGA-BR-4292-01 8 75263642 75263642 A - GDAP1 Frame_Shift_Del p.N85Tfs*2 0.15 TCGA-BR-4292-01 8 77617337 77617337 A - ZFHX4 Frame_Shift_Del p.K340Nfs*15 0.15 TCGA-BR-4292-01 8 80915402 80915402 T - MRPS28 Frame_Shift_Del p.N76Mfs*9 0.13 TCGA-BR-4292-01 8 81555314 81555314 C T ZNF704 Silent p.A361A 0.08 TCGA-BR-4292-01 8 8176553 8176553 G A SGK223 Missense_Mutation p.A1111V 0.24 benign(0.284) TCGA-BR-4292-01 8 8233918 8233918 C T SGK223 Silent p.T667T 0.14 TCGA-BR-4292-01 8 86114461 86114461 A - E2F5 Frame_Shift_Del p.K107Sfs*11 0.20 TCGA-BR-4292-01 8 86572142 86572142 T C REXO1L1P 3'UTR 0.08 TCGA-BR-4292-01 8 87111213 87111213 C T ATP6V0D2 Silent p.L2L 0.20 TCGA-BR-4292-01 8 8747883 8747883 C T MFHAS1 Missense_Mutation p.A896T 0.22 tolerated(0.12) possibly_damaging(0.588) TCGA-BR-4292-01 8 88885164 88885164 C T DCAF4L2 Missense_Mutation p.G346S 0.16 deleterious(0.03) benign(0.115) TCGA-BR-4292-01 8 90796355 90796355 T C RIPK2 Silent p.H339H 0.22 TCGA-BR-4292-01 8 93088227 93088227 G A RUNX1T1 Intron 0.17 TCGA-BR-4292-01 8 95538496 95538496 A T KIAA1429 Missense_Mutation p.I659N 0.20 deleterious(0) probably_damaging(0.999) TCGA-BR-4292-01 8 95683841 95683842 - G ESRP1 Frame_Shift_Ins p.E467Gfs*44 0.29 TCGA-BR-4292-01 8 97243341 97243341 G A UQCRB Missense_Mutation p.R139C 0.20 deleterious_low_confidence(0) unknown(0) TCGA-BR-4292-01 9 101304194 101304194 G A GABBR2 Silent p.R197R 0.19 TCGA-BR-4292-01 9 101536250 101536250 G A ANKS6 Missense_Mutation p.T577M 0.26 tolerated(0.26) benign(0.007) TCGA-BR-4292-01 9 101832036 101832036 G A COL15A1 Silent p.A1345A 0.23 TCGA-BR-4292-01 9 103035177 103035177 G T INVS Nonsense_Mutation p.E535* 0.24 TCGA-BR-4292-01 9 104357271 104357271 G A PPP3R2 5'UTR 0.25 TCGA-BR-4292-01 9 106876290 106876290 G A SMC2 Missense_Mutation p.R487H 0.22 tolerated(0.28) benign(0.008) TCGA-BR-4292-01 9 110249320 110249320 C T KLF4 Missense_Mutation p.R418Q 0.24 deleterious(0.01) benign(0.154) TCGA-BR-4292-01 9 112015826 112015826 G A EPB41L4B Missense_Mutation p.R392W 0.20 deleterious(0) probably_damaging(0.997) TCGA-BR-4292-01 9 112687354 112687354 C T PALM2-AKAP2 Missense_Mutation p.T129M 0.26 tolerated(0.12) benign(0.313) TCGA-BR-4292-01 9 112898790 112898790 C - PALM2-AKAP2 Frame_Shift_Del p.P324Lfs*81 0.30 TCGA-BR-4292-01 9 116359161 116359161 G A RGS3 Silent p.S1175S 0.22 TCGA-BR-4292-01 9 117692480 117692480 C A TNFSF8 Missense_Mutation p.S35I 0.27 tolerated(0.16) benign(0.033) TCGA-BR-4292-01 9 117853061 117853061 C T TNC Silent p.P79P 0.25 TCGA-BR-4292-01 9 120053685 120053685 C G ASTN2 Missense_Mutation p.A184P 0.26 tolerated_low_confidence(0.16) possibly_damaging(0.82) TCGA-BR-4292-01 9 126146185 126146185 G A DENND1A Missense_Mutation p.P529S 0.16 deleterious(0.03) possibly_damaging(0.752) TCGA-BR-4292-01 9 12702411 12702414 ACAA - TYRP1 Frame_Shift_Del p.N353Vfs*31 0.32 TCGA-BR-4292-01 9 127561749 127561749 G A OLFML2A Silent p.T216T 0.40 TCGA-BR-4292-01 9 127639218 127639218 A - ARPC5L Frame_Shift_Del 0.18 TCGA-BR-4292-01 9 127652731 127652731 C A GOLGA1 Silent p.V478V 0.32 TCGA-BR-4292-01 9 127684160 127684160 T - GOLGA1 Frame_Shift_Del p.E192Kfs*4 0.20 TCGA-BR-4292-01 9 127818218 127818218 C A SCAI Missense_Mutation p.R79M 0.27 deleterious(0) probably_damaging(0.996) TCGA-BR-4292-01 9 127982827 127982827 C T RABEPK Missense_Mutation p.T125M 0.27 tolerated(0.13) benign(0.008) TCGA-BR-4292-01 9 127998919 127998919 G A HSPA5 Silent p.G639G 0.23 TCGA-BR-4292-01 9 129595780 129595780 A G ZBTB43 Missense_Mutation p.D331G 0.27 tolerated(0.36) benign(0) TCGA-BR-4292-01 9 129870416 129870416 G A ANGPTL2 Nonsense_Mutation p.Q199* 0.19 TCGA-BR-4292-01 9 130210644 130210644 C T RPL12 Silent p.R117R 0.21 TCGA-BR-4292-01 9 130507045 130507045 G A SH2D3C Missense_Mutation p.A533V 0.05 tolerated(0.29) benign(0.003) TCGA-BR-4292-01 9 130829391 130829391 C A NAIF1 5'UTR 0.25 TCGA-BR-4292-01 9 131019390 131019390 A - GOLGA2 Frame_Shift_Del p.Y989Tfs*9 0.27 TCGA-BR-4292-01 9 131670129 131670129 C T LRRC8A Missense_Mutation p.T229M 0.41 tolerated(0.51) benign(0.386) TCGA-BR-4292-01 9 131755602 131755602 A G NUP188 Missense_Mutation p.T923A 0.07 tolerated(0.15) possibly_damaging(0.705) TCGA-BR-4292-01 9 133506013 133506014 - G FUBP3 Splice_Site p.X374_splice 0.22 TCGA-BR-4292-01 9 134136213 134136213 C T FAM78A Missense_Mutation p.R283Q 0.21 deleterious_low_confidence(0.02) probably_damaging(0.947) TCGA-BR-4292-01 9 134371131 134371133 AAC - PRRC2B In_Frame_Del p.Q2188del 0.33 TCGA-BR-4292-01 9 135073517 135073517 G A NTNG2 Silent p.S126S 0.37 TCGA-BR-4292-01 9 135203509 135203509 T - SETX Frame_Shift_Del p.K1159Sfs*16 0.15 TCGA-BR-4292-01 9 136528858 136528858 C T SARDH 3'UTR 0.35 TCGA-BR-4292-01 9 136536721 136536721 C T SARDH Silent p.A754A 0.17 TCGA-BR-4292-01 9 136660824 136660824 C A VAV2 Missense_Mutation p.R356M 0.33 deleterious(0) possibly_damaging(0.877) TCGA-BR-4292-01 9 137674515 137674515 T C COL5A1 Silent p.G811G 0.06 TCGA-BR-4292-01 9 137803098 137803098 C T FCN1 Missense_Mutation p.R205H 0.24 deleterious(0.02) possibly_damaging(0.633) TCGA-BR-4292-01 9 139092502 139092502 G A LHX3 Silent p.S64S 0.15 TCGA-BR-4292-01 9 139100527 139100527 G T QSOX2 3'UTR 0.19 TCGA-BR-4292-01 9 139310805 139310805 C T PMPCA Missense_Mutation p.P199S 0.21 deleterious(0) probably_damaging(0.997) TCGA-BR-4292-01 9 139311652 139311652 G - PMPCA Frame_Shift_Del p.I297Lfs*4 0.19 TCGA-BR-4292-01 9 139328514 139328514 C T INPP5E Missense_Mutation p.G337R 0.23 deleterious(0) probably_damaging(1) TCGA-BR-4292-01 9 139635288 139635288 G A LCN10 Missense_Mutation p.H159Y 0.14 deleterious(0.01) benign(0.356) TCGA-BR-4292-01 9 139927540 139927540 C T C9orf139 Missense_Mutation p.P9S 0.23 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-BR-4292-01 9 140079368 140079368 G A ANAPC2 Nonsense_Mutation p.R349* 0.23 TCGA-BR-4292-01 9 140331728 140331728 G A ENTPD8 Missense_Mutation p.A93V 0.17 tolerated(0.09) benign(0.014) TCGA-BR-4292-01 9 140347017 140347017 C T NSMF Missense_Mutation p.E385K 0.24 deleterious(0.01) possibly_damaging(0.78) TCGA-BR-4292-01 9 140356679 140356679 G - PNPLA7 Frame_Shift_Del p.I1200Sfs*148 0.21 TCGA-BR-4292-01 9 140392668 140392668 A G PNPLA7 Missense_Mutation p.L596P 0.21 deleterious(0) probably_damaging(1) TCGA-BR-4292-01 9 140676805 140676805 G A EHMT1 Missense_Mutation p.A780T 0.24 deleterious(0) probably_damaging(1) TCGA-BR-4292-01 9 140732961 140732961 C - EHMT1 3'Flank 0.32 TCGA-BR-4292-01 9 140772539 140772539 C T CACNA1B Missense_Mutation p.R52C 0.24 deleterious(0) benign(0.428) TCGA-BR-4292-01 9 2054701 2054701 G A SMARCA2 Missense_Mutation p.R384Q 0.23 benign(0.238) TCGA-BR-4292-01 9 2123835 2123835 G T SMARCA2 Missense_Mutation p.R1293S 0.22 benign(0.227) TCGA-BR-4292-01 9 21334793 21334793 T C KLHL9 Silent p.G22G 0.29 TCGA-BR-4292-01 9 214857 214857 C T C9orf66 Silent p.A180A 0.22 TCGA-BR-4292-01 9 27206739 27206739 C T TEK Missense_Mutation p.R842C 0.29 deleterious(0.01) probably_damaging(0.993) TCGA-BR-4292-01 9 33675365 33675365 A - PTENP1 RNA 0.94 TCGA-BR-4292-01 9 34371530 34371530 G A KIAA1161 Missense_Mutation p.P437L 0.33 deleterious(0) probably_damaging(1) TCGA-BR-4292-01 9 35107839 35107840 - G FAM214B Frame_Shift_Ins p.C145Lfs*43 0.26 TCGA-BR-4292-01 9 35812118 35812118 T C SPAG8 Silent p.G9G 0.24 TCGA-BR-4292-01 9 35825359 35825359 G A FAM221B Missense_Mutation p.R204C 0.26 deleterious(0.05) benign(0.016) TCGA-BR-4292-01 9 36171031 36171031 G A CCIN Missense_Mutation p.C511Y 0.23 tolerated(0.55) benign(0.006) TCGA-BR-4292-01 9 37126308 37126308 G T ZCCHC7 Splice_Site 0.17 TCGA-BR-4292-01 9 37745690 37745690 G A FRMPD1 Missense_Mutation p.V1221I 0.18 tolerated_low_confidence(0.26) benign(0.003) TCGA-BR-4292-01 9 37763633 37763633 C - TRMT10B Frame_Shift_Del p.Q103Sfs*7 0.14 TCGA-BR-4292-01 9 37780636 37780637 - T EXOSC3 3'UTR 0.21 TCGA-BR-4292-01 9 41962608 41962608 T C RP11-204M4.2 RNA 0.07 TCGA-BR-4292-01 9 43822677 43822677 G A CNTNAP3B Missense_Mutation p.E411K 0.09 tolerated(0.33) benign(0.005) TCGA-BR-4292-01 9 70993121 70993121 C T PGM5 Nonsense_Mutation p.R90* 0.05 TCGA-BR-4292-01 9 77598694 77598694 T C C9orf41 Missense_Mutation p.K407E 0.21 deleterious(0) probably_damaging(0.999) TCGA-BR-4292-01 9 78710821 78710821 G A PCSK5 Missense_Mutation p.G304S 0.23 deleterious(0) probably_damaging(1) TCGA-BR-4292-01 9 78973724 78973724 C T PCSK5 Silent p.I1823I 0.25 TCGA-BR-4292-01 9 84603897 84603897 A - SPATA31D1 Frame_Shift_Del p.N57Ifs*43 0.27 TCGA-BR-4292-01 9 84609582 84609582 T G SPATA31D1 Silent p.T1399T 0.23 TCGA-BR-4292-01 9 86452186 86452186 G - KIF27 Frame_Shift_Del p.S1313Vfs*5 0.17 TCGA-BR-4292-01 9 88248234 88248234 C T AGTPBP1 Missense_Mutation p.R413H 0.27 tolerated(0.19) benign(0.002) TCGA-BR-4292-01 9 90321802 90321802 G - DAPK1 Frame_Shift_Del p.Y1275Tfs*31 0.27 TCGA-BR-4292-01 9 91680487 91680487 A G SHC3 Silent p.T264T 0.21 TCGA-BR-4292-01 9 91956314 91956315 - G SECISBP2 Frame_Shift_Ins p.M455Hfs*105 0.23 TCGA-BR-4292-01 9 94495598 94495598 G A ROR2 Missense_Mutation p.P248L 0.29 tolerated(0.2) benign(0.156) TCGA-BR-4292-01 9 96428129 96428129 C T PHF2 Missense_Mutation p.P700L 0.22 tolerated(0.4) unknown(0) TCGA-BR-4292-01 9 97041061 97041063 CTC - ZNF169 5'UTR 0.31 TCGA-BR-4292-01 9 97062823 97062823 G A ZNF169 Missense_Mutation p.R328H 0.10 deleterious(0.03) possibly_damaging(0.892) TCGA-BR-4292-01 9 97203311 97203311 C T HIATL1 Missense_Mutation p.T147M 0.23 deleterious(0) probably_damaging(0.988) TCGA-BR-4292-01 9 99521928 99521928 C T ZNF510 Missense_Mutation p.R395Q 0.25 tolerated(1) benign(0) TCGA-BR-4292-01 X 100169452 100169452 G A XKRX Missense_Mutation p.R409C 0.24 deleterious(0.02) probably_damaging(0.925) TCGA-BR-4292-01 X 100387216 100387216 G A CENPI Missense_Mutation p.S442N 0.32 tolerated(0.15) benign(0.055) TCGA-BR-4292-01 X 100667790 100667790 T G HNRNPH2 Missense_Mutation p.S272A 0.13 tolerated(0.45) possibly_damaging(0.829) TCGA-BR-4292-01 X 101095488 101095488 G A NXF5 Silent p.D227D 0.33 TCGA-BR-4292-01 X 101138866 101138866 G A ZMAT1 Silent p.Y511Y 0.26 TCGA-BR-4292-01 X 103434329 103434329 G A FAM199X Missense_Mutation p.R346H 0.34 deleterious_low_confidence(0.01) probably_damaging(0.989) TCGA-BR-4292-01 X 105153047 105153047 C T NRK Missense_Mutation p.R473W 0.29 tolerated_low_confidence(0.06) benign(0.003) TCGA-BR-4292-01 X 105156736 105156736 A - NRK Frame_Shift_Del p.I783Lfs*66 0.40 TCGA-BR-4292-01 X 105865880 105865880 G C CXorf57 Splice_Site p.X215_splice 0.28 TCGA-BR-4292-01 X 106844964 106844964 C T FRMPD3 Missense_Mutation p.T1265I 0.27 deleterious(0.05) probably_damaging(0.999) TCGA-BR-4292-01 X 107224932 107224933 CT - TEX13B Frame_Shift_Del p.E142Afs*41 0.33 TCGA-BR-4292-01 X 107978724 107978724 C T IRS4 Missense_Mutation p.R284H 0.36 deleterious(0) probably_damaging(0.999) TCGA-BR-4292-01 X 109964646 109964646 C T CHRDL1 Silent p.R138R 0.15 TCGA-BR-4292-01 X 110954936 110954936 C T ALG13 Missense_Mutation p.R290W 0.41 deleterious(0) probably_damaging(1) TCGA-BR-4292-01 X 111090440 111090440 T C TRPC5 Silent p.G534G 0.29 TCGA-BR-4292-01 X 113965896 113965896 G T HTR2C Missense_Mutation p.A77S 0.36 deleterious(0) probably_damaging(1) TCGA-BR-4292-01 X 114419019 114419019 T A LRCH2 Silent p.V192V 0.13 TCGA-BR-4292-01 X 114422934 114422934 C T LRCH2 Splice_Site p.X117_splice 0.27 TCGA-BR-4292-01 X 118752622 118752622 G - SEPT6 3'UTR 0.25 TCGA-BR-4292-01 X 119419025 119419025 G A TMEM255A Missense_Mutation p.R181W 0.24 deleterious(0) probably_damaging(0.976) TCGA-BR-4292-01 X 120009111 120009111 G A CT47B1 Silent p.N138N 0.25 TCGA-BR-4292-01 X 124097630 124097630 A - TENM1 5'UTR 0.26 TCGA-BR-4292-01 X 12722594 12722594 C T FRMPD4 Missense_Mutation p.P396L 0.25 deleterious(0) probably_damaging(0.983) TCGA-BR-4292-01 X 128924995 128924995 C T SASH3 Missense_Mutation p.A127V 0.39 tolerated(0.07) benign(0.003) TCGA-BR-4292-01 X 12939203 12939203 A G TLR8 Missense_Mutation p.T682A 0.33 tolerated(0.74) benign(0.05) TCGA-BR-4292-01 X 12939876 12939876 A - TLR8 Frame_Shift_Del p.E907Rfs*11 0.29 TCGA-BR-4292-01 X 130222706 130222706 C T ARHGAP36 Missense_Mutation p.R531C 0.37 deleterious_low_confidence(0.01) possibly_damaging(0.518) TCGA-BR-4292-01 X 131762581 131762582 - A HS6ST2 Frame_Shift_Ins p.L536Ffs*93 0.25 TCGA-BR-4292-01 X 132445391 132445391 G A GPC4 Missense_Mutation p.R258W 0.34 deleterious(0) possibly_damaging(0.636) TCGA-BR-4292-01 X 133674535 133674535 T C MIR503HG 3'Flank 0.33 TCGA-BR-4292-01 X 133675434 133675434 G A MIR542 RNA 0.36 TCGA-BR-4292-01 X 134166473 134166473 G A FAM127A Silent p.T20T 0.37 TCGA-BR-4292-01 X 134185793 134185793 C T FAM127B 3'UTR 0.24 TCGA-BR-4292-01 X 134989148 134989148 A C SAGE1 Missense_Mutation p.N267T 0.28 deleterious(0.04) probably_damaging(0.991) TCGA-BR-4292-01 X 135047268 135047268 G A MMGT1 Missense_Mutation p.S104L 0.31 tolerated(0.33) benign(0.295) TCGA-BR-4292-01 X 135751673 135751673 C T ARHGEF6 Missense_Mutation p.A720T 0.29 tolerated(0.11) possibly_damaging(0.604) TCGA-BR-4292-01 X 135956574 135956574 C T RBMX Silent p.P301P 0.25 TCGA-BR-4292-01 X 137793063 137793063 T C FGF13 Intron 0.30 TCGA-BR-4292-01 X 140335784 140335784 G A SPANXC Missense_Mutation p.R54C 0.23 tolerated(0.19) benign(0.033) TCGA-BR-4292-01 X 142605183 142605183 T A SPANXN3 Missense_Mutation p.T13S 0.38 deleterious(0.03) benign(0.069) TCGA-BR-4292-01 X 148039963 148039963 C - AFF2 Frame_Shift_Del p.H890Tfs*56 0.27 TCGA-BR-4292-01 X 149013702 149013702 C - MAGEA8 Frame_Shift_Del p.P220Rfs*9 0.11 TCGA-BR-4292-01 X 149013887 149013888 - T MAGEA8 Frame_Shift_Ins p.A282Cfs*2 0.26 TCGA-BR-4292-01 X 149014023 149014023 C T MAGEA8 3'UTR 0.30 TCGA-BR-4292-01 X 150912002 150912002 C - CNGA2 Frame_Shift_Del p.P344Lfs*2 0.27 TCGA-BR-4292-01 X 151821591 151821591 C - GABRQ Frame_Shift_Del p.P584Qfs*109 0.26 TCGA-BR-4292-01 X 151896259 151896259 T - MAGEA12 3'Flank 0.25 TCGA-BR-4292-01 X 152613196 152613196 C T ZNF275 Intron 0.24 TCGA-BR-4292-01 X 152813442 152813442 C T ATP2B3 Nonsense_Mutation p.Q370* 0.29 TCGA-BR-4292-01 X 153042773 153042773 C T PLXNB3 Missense_Mutation p.R1703C 0.31 deleterious(0) probably_damaging(0.954) TCGA-BR-4292-01 X 153047269 153047269 T A SRPK3 Missense_Mutation p.I124N 0.29 deleterious(0) probably_damaging(0.997) TCGA-BR-4292-01 X 153128277 153128277 G A L1CAM Silent p.D1205D 0.47 TCGA-BR-4292-01 X 153207102 153207102 G A RENBP Silent p.H258H 0.28 TCGA-BR-4292-01 X 153577190 153577190 G A FLNA 3'UTR 0.35 TCGA-BR-4292-01 X 153581719 153581719 C T FLNA Silent p.P1989P 0.31 TCGA-BR-4292-01 X 153669509 153669509 C T GDI1 Silent p.N262N 0.12 TCGA-BR-4292-01 X 153678623 153678623 C T FAM50A Missense_Mutation p.R323C 0.29 deleterious(0) probably_damaging(0.931) TCGA-BR-4292-01 X 153706395 153706395 C T LAGE3 Missense_Mutation p.R107H 0.35 tolerated(0.44) benign(0.122) TCGA-BR-4292-01 X 154158195 154158195 T - F8 Frame_Shift_Del p.E1292Rfs*16 0.28 TCGA-BR-4292-01 X 154290070 154290070 A - CMC4 3'UTR 0.35 TCGA-BR-4292-01 X 154490449 154490449 C T RAB39B Missense_Mutation p.R94H 0.33 deleterious(0.04) probably_damaging(1) TCGA-BR-4292-01 X 15607507 15607507 C T ACE2 Missense_Mutation p.R219H 0.26 deleterious(0) probably_damaging(0.954) TCGA-BR-4292-01 X 1712726 1712726 G A AKAP17A Missense_Mutation p.R124H 0.47 deleterious(0) probably_damaging(0.984) TCGA-BR-4292-01 X 18622107 18622107 C T CDKL5 Missense_Mutation p.R355W 0.07 deleterious_low_confidence(0) possibly_damaging(0.689) TCGA-BR-4292-01 X 18845705 18845706 - A PPEF1 3'UTR 0.30 TCGA-BR-4292-01 X 19475114 19475114 C T MAP3K15 Silent p.L304L 0.29 TCGA-BR-4292-01 X 21674083 21674083 C T KLHL34 Silent p.A608A 0.24 TCGA-BR-4292-01 X 21863335 21863335 T - MBTPS2 Frame_Shift_Del p.L93Sfs*6 0.26 TCGA-BR-4292-01 X 26212473 26212473 C T MAGEB6 Silent p.A170A 0.24 TCGA-BR-4292-01 X 27766493 27766495 TCT - DCAF8L2 In_Frame_Del p.F496del 0.46 TCGA-BR-4292-01 X 2825515 2825515 G A ARSD Missense_Mutation p.R527W 0.47 deleterious(0.02) benign(0.053) TCGA-BR-4292-01 X 3240641 3240641 G T MXRA5 Missense_Mutation p.P1029T 0.33 tolerated(0.23) benign(0.276) TCGA-BR-4292-01 X 34149285 34149285 G A FAM47A Missense_Mutation p.R371W 0.34 tolerated(0.08) possibly_damaging(0.802) TCGA-BR-4292-01 X 34962859 34962859 C T FAM47B Silent p.D637D 0.30 TCGA-BR-4292-01 X 35993957 35993959 TTG - CXorf22 In_Frame_Del p.C882del 0.32 TCGA-BR-4292-01 X 40996215 40996215 A G USP9X Silent p.S198S 0.38 TCGA-BR-4292-01 X 46943850 46943850 C T RGN Missense_Mutation p.S66L 0.14 deleterious(0.05) benign(0.061) TCGA-BR-4292-01 X 48053565 48053565 C A SSX5 Missense_Mutation p.V135F 0.14 deleterious(0.01) probably_damaging(0.966) TCGA-BR-4292-01 X 48399811 48399811 C T TBC1D25 Nonsense_Mutation p.R72* 0.32 TCGA-BR-4292-01 X 48759706 48759706 C T PQBP1 Silent p.R163R 0.23 TCGA-BR-4292-01 X 48887952 48887952 C - TFE3 Frame_Shift_Del p.G482Dfs*44 0.38 TCGA-BR-4292-01 X 49049793 49049793 C T SYP Missense_Mutation p.R184H 0.30 tolerated(0.13) benign(0.01) TCGA-BR-4292-01 X 53106173 53106173 G A GPR173 Missense_Mutation p.A124T 0.17 deleterious(0) probably_damaging(0.993) TCGA-BR-4292-01 X 53587313 53587313 G A HUWE1 Silent p.D2524D 0.21 TCGA-BR-4292-01 X 53589102 53589102 C T HUWE1 Silent p.E2436E 0.41 TCGA-BR-4292-01 X 54208985 54208985 G A FAM120C Missense_Mutation p.P216L 0.22 deleterious(0) benign(0.33) TCGA-BR-4292-01 X 54841883 54841883 G A MAGED2 Missense_Mutation p.R530Q 0.33 tolerated(0.47) possibly_damaging(0.884) TCGA-BR-4292-01 X 54957360 54957360 C T TRO Silent p.N1401N 0.36 TCGA-BR-4292-01 X 55513209 55513209 T - USP51 3'UTR 0.27 TCGA-BR-4292-01 X 55514444 55514444 C G USP51 Missense_Mutation p.R310T 0.27 tolerated(0.07) benign(0.001) TCGA-BR-4292-01 X 67293039 67293039 G A OPHN1 Nonsense_Mutation p.R597* 0.46 TCGA-BR-4292-01 X 71681927 71681927 G A HDAC8 Missense_Mutation p.T311M 0.29 deleterious(0.03) probably_damaging(1) TCGA-BR-4292-01 X 73065310 73065310 A T XIST RNA 0.28 TCGA-BR-4292-01 X 73524363 73524363 C T ZCCHC13 Missense_Mutation p.R88C 0.25 deleterious(0) benign(0.047) TCGA-BR-4292-01 X 73524621 73524621 C - ZCCHC13 3'UTR 0.33 TCGA-BR-4292-01 X 73961202 73961202 G A KIAA2022 Missense_Mutation p.R1064C 0.32 deleterious(0) probably_damaging(1) TCGA-BR-4292-01 X 75650737 75650737 T G MAGEE1 Missense_Mutation p.L805R 0.23 deleterious(0) probably_damaging(0.999) TCGA-BR-4292-01 X 79279656 79279656 C T TBX22 Missense_Mutation p.R151C 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-BR-4292-01 X 79980463 79980463 C T BRWD3 Missense_Mutation p.R497Q 0.35 tolerated(0.1) benign(0.1) TCGA-BR-4292-01 X 82764299 82764299 C T POU3F4 Missense_Mutation p.R323C 0.42 deleterious(0) probably_damaging(1) TCGA-BR-4292-01 X 92927271 92927271 G T NAP1L3 Missense_Mutation p.L345M 0.24 deleterious(0.02) probably_damaging(0.961) TCGA-BR-4292-01 X 96854260 96854260 C T DIAPH2 Nonsense_Mutation p.R1084* 0.26 TCGA-BR-4292-01 X 9914758 9914758 C T SHROOM2 Silent p.D1544D 0.30 TCGA-BR-4292-01 X 99551449 99551449 G T PCDH19 Silent p.A1091A 0.28 TCGA-BR-4294-01 10 102006563 102006563 G A CWF19L1 Missense_Mutation p.L280F 0.44 tolerated(0.08) benign(0.077) TCGA-BR-4294-01 10 73521610 73521610 G A C10orf54 Missense_Mutation p.R86C 0.13 deleterious(0) probably_damaging(0.934) TCGA-BR-4294-01 10 7608308 7608308 G A ITIH5 Missense_Mutation p.R738C 0.42 deleterious(0) probably_damaging(1) TCGA-BR-4294-01 10 90341418 90341418 C T RNLS Silent p.S91S 0.31 TCGA-BR-4294-01 11 2950367 2950367 G T PHLDA2 Missense_Mutation p.D76E 0.86 tolerated(0.5) benign(0.122) TCGA-BR-4294-01 11 35513643 35513643 C G PAMR1 Missense_Mutation p.G110A 0.57 deleterious(0) probably_damaging(1) TCGA-BR-4294-01 11 85347202 85347202 G A TMEM126B Missense_Mutation p.G208R 0.89 deleterious(0) probably_damaging(0.998) TCGA-BR-4294-01 12 108004034 108004034 G A BTBD11 Missense_Mutation p.D571N 0.09 tolerated(0.09) probably_damaging(1) TCGA-BR-4294-01 12 57397688 57397688 C T ZBTB39 Silent p.R338R 0.43 TCGA-BR-4294-01 15 38643405 38643405 A T SPRED1 Missense_Mutation p.Y292F 0.75 deleterious(0) possibly_damaging(0.904) TCGA-BR-4294-01 15 40018838 40018838 G A FSIP1 Silent p.S334S 0.13 TCGA-BR-4294-01 16 31051116 31051116 G T STX4 Missense_Mutation p.V296F 0.05 tolerated(0.18) benign(0.009) TCGA-BR-4294-01 16 53913791 53913791 C T FTO Silent p.R337R 0.97 TCGA-BR-4294-01 16 9009114 9009114 T A USP7 Missense_Mutation p.N359Y 0.12 deleterious(0) probably_damaging(0.983) TCGA-BR-4294-01 17 45913414 45913414 G C LRRC46 Missense_Mutation p.S133T 0.38 tolerated(0.08) benign(0.21) TCGA-BR-4294-01 17 60140634 60140634 T A MED13 Missense_Mutation p.K32I 0.53 deleterious(0.01) benign(0.077) TCGA-BR-4294-01 17 78282871 78282871 A C RNF213 Missense_Mutation p.H852P 0.11 probably_damaging(0.999) TCGA-BR-4294-01 19 18888244 18888244 C T CRTC1 3'UTR 0.32 TCGA-BR-4294-01 19 19338422 19338422 G A NCAN Missense_Mutation p.A665T 0.52 tolerated(0.55) benign(0.005) TCGA-BR-4294-01 19 52941686 52941686 C A ZNF534 Missense_Mutation p.P338T 0.42 deleterious(0.01) probably_damaging(0.98) TCGA-BR-4294-01 19 9085666 9085666 G T MUC16 Missense_Mutation p.S2050Y 0.39 unknown(0) TCGA-BR-4294-01 1 158045982 158045982 G A KIRREL Silent p.L44L 0.34 TCGA-BR-4294-01 1 208216499 208216499 G C PLXNA2 Missense_Mutation p.D1308E 0.22 deleterious(0.01) probably_damaging(0.956) TCGA-BR-4294-01 1 7725006 7725006 G A CAMTA1 Missense_Mutation p.S800N 0.93 tolerated_low_confidence(0.18) benign(0.004) TCGA-BR-4294-01 21 10862639 10862639 G T IGHV1OR21-1 Missense_Mutation p.R6S 0.11 tolerated(0.32) benign(0.121) TCGA-BR-4294-01 21 39580370 39580370 C A DSCR10 RNA 0.44 TCGA-BR-4294-01 2 111419292 111419292 C A BUB1 Missense_Mutation p.V362F 0.43 tolerated(0.45) benign(0.235) TCGA-BR-4294-01 2 1687887 1687887 T G PXDN Silent p.P151P 0.47 TCGA-BR-4294-01 2 228886570 228886571 - CCAG SPHKAP Frame_Shift_Ins p.V185Afs*19 0.14 TCGA-BR-4294-01 2 86075089 86075089 T C ST3GAL5 Missense_Mutation p.H186R 0.27 tolerated(0.49) benign(0.017) TCGA-BR-4294-01 5 140595396 140595396 C T PCDHB13 Silent p.N567N 0.46 TCGA-BR-4294-01 5 140768698 140768698 A G PCDHGB4 Missense_Mutation p.Y416C 0.38 deleterious(0) probably_damaging(1) TCGA-BR-4294-01 5 35065171 35065171 T G PRLR 3'UTR 0.09 TCGA-BR-4294-01 6 70064152 70064152 A C BAI3 Silent p.R1163R 0.63 TCGA-BR-4294-01 7 142161977 142161977 C T TRBV6-6 Missense_Mutation p.A100T 0.44 tolerated(0.16) possibly_damaging(0.54) TCGA-BR-4294-01 8 71071839 71071839 G A NCOA2 Missense_Mutation p.S342F 0.95 deleterious(0) possibly_damaging(0.841) TCGA-BR-4294-01 8 86572313 86572313 G C REXO1L1P 3'UTR 0.25 TCGA-BR-4294-01 9 32631710 32631710 C T TAF1L Missense_Mutation p.G1290R 0.42 deleterious(0) probably_damaging(1) TCGA-BR-4294-01 9 5922218 5922218 C T KIAA2026 Missense_Mutation p.A1260T 0.14 tolerated(0.89) benign(0.003) TCGA-BR-4294-01 X 70349258 70349258 C T MED12 Missense_Mutation p.L1224F 0.93 probably_damaging(0.999) TCGA-BR-4357-01 10 104230737 104230737 C G TMEM180 Missense_Mutation p.F189L 0.23 tolerated(0.53) benign(0.023) TCGA-BR-4357-01 10 105146935 105146935 C G TAF5 Silent p.L611L 0.20 TCGA-BR-4357-01 10 105331460 105331460 G TC NEURL1 Frame_Shift_Ins p.R177Lfs*41 0.13 TCGA-BR-4357-01 10 114205154 114205154 T C ZDHHC6 Missense_Mutation p.Q14R 0.15 tolerated(0.44) benign(0.001) TCGA-BR-4357-01 10 116735016 116735016 C G TRUB1 Missense_Mutation p.L310V 0.28 tolerated(0.07) benign(0.13) TCGA-BR-4357-01 10 129868079 129868079 G A PTPRE Missense_Mutation p.M377I 0.25 deleterious(0) benign(0.024) TCGA-BR-4357-01 10 16911646 16911646 C T CUBN Missense_Mutation p.R3148Q 0.04 tolerated(0.26) benign(0.003) TCGA-BR-4357-01 10 18196558 18196558 G A MRC1 Missense_Mutation p.A1337T 0.24 tolerated(0.06) benign(0.305) TCGA-BR-4357-01 10 18270258 18270258 G T SLC39A12 Missense_Mutation p.R314S 0.16 tolerated(0.82) benign(0.007) TCGA-BR-4357-01 10 38407159 38407159 T G ZNF37A Missense_Mutation p.C360W 0.14 deleterious(0) probably_damaging(0.998) TCGA-BR-4357-01 10 38407163 38407163 A G ZNF37A Missense_Mutation p.K362E 0.14 deleterious(0) probably_damaging(0.986) TCGA-BR-4357-01 10 54527770 54527770 T G MBL2 3'UTR 0.12 TCGA-BR-4357-01 10 79566548 79566548 C G DLG5 Missense_Mutation p.K1645N 0.27 deleterious(0) probably_damaging(0.996) TCGA-BR-4357-01 10 89272968 89272968 A T MINPP1 Missense_Mutation p.D308V 0.27 tolerated(0.35) benign(0.223) TCGA-BR-4357-01 10 93389974 93389974 A G PPP1R3C Silent p.L222L 0.22 TCGA-BR-4357-01 10 98806446 98806446 G A SLIT1 Silent p.S606S 0.33 TCGA-BR-4357-01 11 103027360 103027360 A G DYNC2H1 Missense_Mutation p.R1330G 0.28 benign(0.001) TCGA-BR-4357-01 11 10822090 10822090 G C EIF4G2 Missense_Mutation p.S583R 0.23 tolerated(0.28) probably_damaging(0.989) TCGA-BR-4357-01 11 118071269 118071269 G C AMICA1 Missense_Mutation p.I277M 0.09 tolerated(0.06) benign(0.195) TCGA-BR-4357-01 11 126147540 126147540 C T FOXRED1 Missense_Mutation p.R473C 0.27 deleterious(0) probably_damaging(1) TCGA-BR-4357-01 11 126396494 126396494 G A KIRREL3 Silent p.Y74Y 0.24 TCGA-BR-4357-01 11 34160817 34160817 T C NAT10 Missense_Mutation p.L764P 0.04 deleterious(0) probably_damaging(0.91) TCGA-BR-4357-01 11 34477709 34477709 A G CAT Missense_Mutation p.Q288R 0.03 deleterious(0) benign(0.105) TCGA-BR-4357-01 11 44148397 44148397 C A EXT2 Missense_Mutation p.A357D 0.26 tolerated(0.27) possibly_damaging(0.817) TCGA-BR-4357-01 11 49831415 49831415 T G RP11-707M1.1 RNA 0.22 TCGA-BR-4357-01 11 500634 500634 G A RNH1 Missense_Mutation p.T41M 0.33 deleterious(0) possibly_damaging(0.908) TCGA-BR-4357-01 11 56345186 56345186 T C OR5M10 Silent p.P4P 0.24 TCGA-BR-4357-01 11 61097044 61097044 G A DDB1 Missense_Mutation p.R114C 0.31 deleterious(0) probably_damaging(0.97) TCGA-BR-4357-01 11 62406828 62406828 G A GANAB Intron 0.23 TCGA-BR-4357-01 11 62933697 62933697 A C SLC22A25 Silent p.T368T 0.17 TCGA-BR-4357-01 11 63058038 63058038 A C SLC22A10 Missense_Mutation p.K134T 0.15 tolerated(0.07) possibly_damaging(0.735) TCGA-BR-4357-01 11 65385537 65385537 C T PCNXL3 Missense_Mutation p.T235I 0.35 tolerated(0.15) benign(0.43) TCGA-BR-4357-01 11 65385540 65385540 C A PCNXL3 Missense_Mutation p.P236H 0.30 deleterious(0) probably_damaging(0.97) TCGA-BR-4357-01 11 67132822 67132822 C T CLCF1 Missense_Mutation p.G155S 0.47 tolerated(0.06) probably_damaging(0.999) TCGA-BR-4357-01 11 6891165 6891165 C G OR10A2 Missense_Mutation p.F60L 0.20 deleterious(0.02) benign(0.007) TCGA-BR-4357-01 11 86158244 86158244 C T ME3 Missense_Mutation p.A415T 0.20 deleterious(0.02) possibly_damaging(0.89) TCGA-BR-4357-01 11 88059393 88059393 G A CTSC Intron 0.67 TCGA-BR-4357-01 11 88911583 88911583 G A TYR Silent p.G154G 0.16 TCGA-BR-4357-01 12 10150965 10150965 A C CLEC1B Missense_Mutation p.S27A 0.04 deleterious(0.03) possibly_damaging(0.632) TCGA-BR-4357-01 12 113617046 113617046 C T DDX54 Missense_Mutation p.E156K 0.23 deleterious(0) possibly_damaging(0.896) TCGA-BR-4357-01 12 13221366 13221366 T G KIAA1467 Missense_Mutation p.L424R 0.24 tolerated(0.09) possibly_damaging(0.815) TCGA-BR-4357-01 12 133780428 133780428 C A ZNF268 Missense_Mutation p.T719K 0.46 deleterious(0) probably_damaging(0.993) TCGA-BR-4357-01 12 21962818 21962818 T A ABCC9 Missense_Mutation p.K1428M 0.24 deleterious(0) probably_damaging(0.998) TCGA-BR-4357-01 12 21970208 21970208 A T ABCC9 Missense_Mutation p.L1269M 0.22 deleterious(0.02) benign(0.281) TCGA-BR-4357-01 12 24737049 24737049 A G LINC00477 RNA 0.06 TCGA-BR-4357-01 12 2558191 2558191 T A CACNA1C Nonsense_Mutation p.L176* 0.14 TCGA-BR-4357-01 12 41333276 41333276 C G CNTN1 Silent p.V456V 0.29 TCGA-BR-4357-01 12 41900462 41900462 C T PDZRN4 Missense_Mutation p.R350C 0.06 deleterious(0.01) probably_damaging(0.989) TCGA-BR-4357-01 12 47172136 47172136 G C SLC38A4 Missense_Mutation p.P337A 0.17 deleterious(0) probably_damaging(0.991) TCGA-BR-4357-01 12 48361948 48361948 T A TMEM106C Missense_Mutation p.M230K 0.11 tolerated(0.07) benign(0.079) TCGA-BR-4357-01 12 52981470 52981470 C T KRT72 Missense_Mutation p.A419T 0.39 deleterious(0) possibly_damaging(0.744) TCGA-BR-4357-01 12 53346603 53346603 G T KRT18 Missense_Mutation p.D424Y 0.09 deleterious(0) possibly_damaging(0.764) TCGA-BR-4357-01 12 56492652 56492652 G C ERBB3 Missense_Mutation p.Q934H 0.05 tolerated(0.23) benign(0.067) TCGA-BR-4357-01 12 6619420 6619420 A C NCAPD2 Intron 0.38 TCGA-BR-4357-01 12 6658964 6658964 C A IFFO1 Silent p.V343V 0.18 TCGA-BR-4357-01 12 7945604 7945604 C G NANOG Silent p.T70T 0.04 TCGA-BR-4357-01 12 91348107 91348107 C T CCER1 Missense_Mutation p.G138D 0.26 deleterious(0.01) probably_damaging(0.982) TCGA-BR-4357-01 12 994221 994221 A G WNK1 Silent p.T1417T 0.09 TCGA-BR-4357-01 13 107145295 107145295 C T EFNB2 3'UTR 0.20 TCGA-BR-4357-01 13 109753232 109753232 G A MYO16 Nonsense_Mutation p.W1123* 0.28 TCGA-BR-4357-01 13 109753233 109753233 C G MYO16 Missense_Mutation p.Q1124E 0.29 deleterious(0.03) benign(0.181) TCGA-BR-4357-01 13 113030779 113030779 G T SPACA7 Missense_Mutation p.R27I 0.15 tolerated(0.43) benign(0.028) TCGA-BR-4357-01 13 33700296 33700296 G C STARD13 Missense_Mutation p.H668Q 0.39 deleterious(0.01) probably_damaging(0.975) TCGA-BR-4357-01 13 46542897 46542897 C T ZC3H13 Missense_Mutation p.R1261Q 0.19 unknown(0) TCGA-BR-4357-01 13 64321072 64321072 G A AL445989.1 Missense_Mutation p.G47S 0.19 unknown(0) TCGA-BR-4357-01 13 76417012 76417012 A G LMO7 Missense_Mutation p.K1120E 0.32 deleterious(0.01) benign(0.271) TCGA-BR-4357-01 13 79190393 79190393 C T RNF219 Silent p.E501E 0.06 TCGA-BR-4357-01 13 95861791 95861791 G T ABCC4 Missense_Mutation p.L228I 0.11 tolerated(0.07) possibly_damaging(0.609) TCGA-BR-4357-01 14 20404092 20404092 C A OR4K1 Silent p.R89R 0.16 TCGA-BR-4357-01 14 21960502 21960502 A C TOX4 Silent p.A286A 0.33 TCGA-BR-4357-01 14 22133415 22133415 C T OR4E2 Missense_Mutation p.S40L 0.23 tolerated(1) benign(0) TCGA-BR-4357-01 14 53360060 53360060 A G FERMT2 Silent p.S159S 0.04 TCGA-BR-4357-01 14 67831719 67831719 G C EIF2S1 Missense_Mutation p.E79Q 0.19 deleterious(0.04) possibly_damaging(0.601) TCGA-BR-4357-01 14 71495432 71495432 T A PCNX Missense_Mutation p.L1161H 0.16 deleterious(0.03) probably_damaging(0.999) TCGA-BR-4357-01 14 94060180 94060180 G A UNC79 Missense_Mutation p.A886T 0.26 deleterious(0) possibly_damaging(0.665) TCGA-BR-4357-01 14 96000046 96000046 T C GLRX5 5'Flank 0.31 TCGA-BR-4357-01 14 96797882 96797882 T C ATG2B Missense_Mutation p.I521V 0.05 tolerated(0.44) benign(0.003) TCGA-BR-4357-01 14 96954684 96954684 T G AK7 3'UTR 0.20 TCGA-BR-4357-01 15 26793220 26793220 A T GABRB3 Missense_Mutation p.V381D 0.20 tolerated(0.06) possibly_damaging(0.819) TCGA-BR-4357-01 15 34049680 34049680 T C RYR3 Missense_Mutation p.L2863P 0.69 probably_damaging(0.943) TCGA-BR-4357-01 15 40328512 40328512 G A SRP14 3'UTR 0.05 TCGA-BR-4357-01 15 43045268 43045268 T C TTBK2 Missense_Mutation p.S726G 0.04 deleterious_low_confidence(0) benign(0.063) TCGA-BR-4357-01 15 44087146 44087146 G A SERINC4 3'UTR 0.47 TCGA-BR-4357-01 15 48062707 48062707 A G SEMA6D Silent p.E649E 0.24 TCGA-BR-4357-01 15 50557855 50557855 C A HDC 5'UTR 0.41 TCGA-BR-4357-01 15 63125635 63125635 A G TLN2 Intron 0.05 TCGA-BR-4357-01 15 74610955 74610955 C G CCDC33 Intron 0.19 TCGA-BR-4357-01 15 81176529 81176529 A G KIAA1199 Missense_Mutation p.R211G 0.46 tolerated(0.26) benign(0.002) TCGA-BR-4357-01 15 84488751 84488751 T G ADAMTSL3 Silent p.T184T 0.17 TCGA-BR-4357-01 16 11114066 11114066 C T CLEC16A Silent p.I440I 0.11 TCGA-BR-4357-01 16 2347452 2347452 C T ABCA3 Missense_Mutation p.R714H 0.45 deleterious(0.05) benign(0.158) TCGA-BR-4357-01 16 27561233 27561233 C T GTF3C1 5'Flank 0.13 TCGA-BR-4357-01 16 29992927 29992927 T C TAOK2 Intron 0.07 TCGA-BR-4357-01 16 75148041 75148041 G A LDHD Missense_Mutation p.L241F 0.04 deleterious(0) benign(0.265) TCGA-BR-4357-01 17 11684396 11684396 C G DNAH9 Missense_Mutation p.I2541M 0.07 probably_damaging(0.961) TCGA-BR-4357-01 17 16068476 16068476 C A NCOR1 Splice_Site p.X146_splice 0.08 TCGA-BR-4357-01 17 27233875 27233875 G A PHF12 Silent p.I893I 0.24 TCGA-BR-4357-01 17 29281541 29281541 G C ADAP2 Missense_Mutation p.E284Q 0.20 tolerated(0.09) probably_damaging(0.995) TCGA-BR-4357-01 17 29657378 29657378 T G NF1 Missense_Mutation p.L1892V 0.43 deleterious(0) probably_damaging(0.952) TCGA-BR-4357-01 17 33331399 33331399 G A LIG3 Silent p.Q968Q 0.49 TCGA-BR-4357-01 17 34391748 34391748 G T CCL18 Missense_Mutation p.A16S 0.23 tolerated(0.2) possibly_damaging(0.527) TCGA-BR-4357-01 17 37564295 37564295 G A MED1 Silent p.I1393I 0.10 TCGA-BR-4357-01 17 37830295 37830295 A G PGAP3 Missense_Mutation p.F170L 0.06 deleterious(0.02) possibly_damaging(0.633) TCGA-BR-4357-01 17 43309736 43309736 G T FMNL1 Missense_Mutation p.E72D 0.06 deleterious(0.04) unknown(0) TCGA-BR-4357-01 17 44061042 44061042 G A MAPT Missense_Mutation p.R291Q 0.59 tolerated(0.59) benign(0.001) TCGA-BR-4357-01 17 56350797 56350797 G A MPO Silent p.A533A 0.18 TCGA-BR-4357-01 17 66920887 66920887 G A ABCA8 Missense_Mutation p.S466F 0.17 tolerated(0.17) benign(0.043) TCGA-BR-4357-01 17 7160303 7160303 C A ELP5 Silent p.G195G 0.56 TCGA-BR-4357-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.66 deleterious(0) probably_damaging(1) TCGA-BR-4357-01 18 44407934 44407934 C T PIAS2 Missense_Mutation p.S499N 0.19 tolerated(0.4) benign(0.134) TCGA-BR-4357-01 18 77679186 77679186 C G PQLC1 Missense_Mutation p.M202I 0.28 deleterious(0) benign(0.292) TCGA-BR-4357-01 19 13346476 13346476 C G CACNA1A Missense_Mutation p.Q1673H 0.08 benign(0.163) TCGA-BR-4357-01 19 15360045 15360045 G A BRD4 Intron 0.29 TCGA-BR-4357-01 19 41076588 41076588 C A SPTBN4 Missense_Mutation p.L2425I 0.19 deleterious(0) possibly_damaging(0.694) TCGA-BR-4357-01 19 43373050 43373050 G T PSG1 Silent p.V282V 0.17 TCGA-BR-4357-01 19 44237015 44237015 C T SMG9 Silent p.K493K 0.23 TCGA-BR-4357-01 19 44590983 44590984 GA - ZNF284 Frame_Shift_Del p.R453Tfs*3 0.35 TCGA-BR-4357-01 19 45165008 45165008 A T PVR Missense_Mutation p.H395L 0.04 tolerated(0.45) benign(0.014) TCGA-BR-4357-01 19 51986375 51986375 T G CEACAM18 Missense_Mutation p.F321V 0.24 tolerated(0.5) benign(0.001) TCGA-BR-4357-01 19 52794513 52794513 G C ZNF766 3'UTR 0.22 TCGA-BR-4357-01 19 6977303 6977303 G C EMR4P RNA 0.15 TCGA-BR-4357-01 19 8841802 8841802 C T OR2Z1 Missense_Mutation p.R138C 0.53 deleterious(0.03) benign(0.01) TCGA-BR-4357-01 19 9076652 9076652 A G MUC16 Silent p.T3598T 0.27 TCGA-BR-4357-01 1 10713947 10713947 C A CASZ1 Missense_Mutation p.D723Y 0.36 deleterious(0.02) probably_damaging(1) TCGA-BR-4357-01 1 109944620 109944620 G A PSMA5 3'UTR 0.28 TCGA-BR-4357-01 1 110085853 110085853 C T GPR61 Missense_Mutation p.T70M 0.22 deleterious(0) probably_damaging(0.996) TCGA-BR-4357-01 1 111773550 111773550 A G CHI3L2 Missense_Mutation p.N86S 0.30 deleterious(0.03) benign(0.054) TCGA-BR-4357-01 1 113257761 113257761 C A PPM1J Missense_Mutation p.A55S 0.15 tolerated(0.7) benign(0.018) TCGA-BR-4357-01 1 11333522 11333522 C T UBIAD1 5'UTR 0.21 TCGA-BR-4357-01 1 115420777 115420783 GCTAGAG - SYCP1 Frame_Shift_Del p.L289Nfs*9 0.08 TCGA-BR-4357-01 1 117568128 117568128 T C CD101 Intron 0.21 TCGA-BR-4357-01 1 12418626 12418626 A G VPS13D Silent p.Q3370Q 0.15 TCGA-BR-4357-01 1 12887510 12887510 T C PRAMEF11 Missense_Mutation p.K116R 0.02 tolerated(0.06) possibly_damaging(0.661) TCGA-BR-4357-01 1 13365893 13365893 T C PRAMEF5 Missense_Mutation p.W113R 0.13 deleterious(0) probably_damaging(0.983) TCGA-BR-4357-01 1 150280709 150280709 C T MRPS21 3'UTR 0.12 TCGA-BR-4357-01 1 152552306 152552306 C A LCE3D Missense_Mutation p.G36V 0.16 tolerated_low_confidence(0.17) unknown(0) TCGA-BR-4357-01 1 153958684 153958684 T G RAB13 Missense_Mutation p.K10T 0.15 deleterious(0) probably_damaging(0.999) TCGA-BR-4357-01 1 155448757 155448757 G A ASH1L Missense_Mutation p.R1302W 0.20 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BR-4357-01 1 156567853 156567853 T G GPATCH4 Missense_Mutation p.N108H 0.07 tolerated(0.06) probably_damaging(0.982) TCGA-BR-4357-01 1 157557239 157557239 A C FCRL4 Missense_Mutation p.L225R 0.03 deleterious(0) probably_damaging(1) TCGA-BR-4357-01 1 157666239 157666239 A C FCRL3 Intron 0.22 TCGA-BR-4357-01 1 158590112 158590112 A T SPTA1 Missense_Mutation p.L2089M 0.12 tolerated(0.24) possibly_damaging(0.447) TCGA-BR-4357-01 1 160260467 160260467 T - COPA Frame_Shift_Del p.I1153Sfs*39 0.10 TCGA-BR-4357-01 1 161140706 161140706 C A PPOX Missense_Mutation p.P420T 0.20 deleterious(0) probably_damaging(0.999) TCGA-BR-4357-01 1 161967729 161967729 G A OLFML2B Missense_Mutation p.P454S 0.19 tolerated(0.31) benign(0.006) TCGA-BR-4357-01 1 16260874 16260874 C A SPEN Silent p.A2713A 0.23 TCGA-BR-4357-01 1 16914255 16914255 C T NBPF1 Silent p.E177E 0.06 TCGA-BR-4357-01 1 169349731 169349731 T A BLZF1 Missense_Mutation p.D227E 0.31 tolerated(0.36) benign(0.077) TCGA-BR-4357-01 1 176661333 176661333 C T PAPPA2 Nonsense_Mutation p.Q835* 0.19 TCGA-BR-4357-01 1 182641984 182641984 T A RGS8 5'UTR 0.18 TCGA-BR-4357-01 1 190067498 190067498 A C BRINP3 Missense_Mutation p.F651V 0.22 tolerated(0.21) benign(0) TCGA-BR-4357-01 1 22329520 22329520 C T CELA3A Missense_Mutation p.S23F 0.10 tolerated(0.67) unknown(0) TCGA-BR-4357-01 1 223438057 223438057 T C SUSD4 Silent p.G213G 0.16 TCGA-BR-4357-01 1 225594439 225594439 G C LBR Missense_Mutation p.F470L 0.26 tolerated(1) benign(0.002) TCGA-BR-4357-01 1 248551054 248551054 A T OR2T6 Missense_Mutation p.I49F 0.04 deleterious(0) possibly_damaging(0.824) TCGA-BR-4357-01 1 248637452 248637452 G A OR2T3 Silent p.P267P 0.07 TCGA-BR-4357-01 1 248737258 248737258 C T OR2T34 Silent p.R267R 0.32 TCGA-BR-4357-01 1 32670295 32670295 G A CCDC28B Intron 0.16 TCGA-BR-4357-01 1 36297664 36297664 A C AGO4 Missense_Mutation p.S375R 0.23 tolerated(0.64) benign(0.002) TCGA-BR-4357-01 1 44450633 44450633 G A B4GALT2 Missense_Mutation p.D245N 0.21 deleterious(0) probably_damaging(0.999) TCGA-BR-4357-01 1 45269063 45269064 - AGC PLK3 Intron p.S358delinsKR 0.10 TCGA-BR-4357-01 1 4772679 4772679 T G AJAP1 Missense_Mutation p.V250G 0.18 deleterious(0) benign(0.013) TCGA-BR-4357-01 1 6706032 6706032 C T DNAJC11 Silent p.V237V 0.23 TCGA-BR-4357-01 1 7848192 7848192 G C PER3 Missense_Mutation p.D160H 0.15 deleterious(0.01) probably_damaging(0.953) TCGA-BR-4357-01 1 8925441 8925441 C A ENO1 Missense_Mutation p.K256N 0.05 deleterious_low_confidence(0.03) possibly_damaging(0.831) TCGA-BR-4357-01 20 10394288 10394288 T A MKKS 5'UTR 0.26 TCGA-BR-4357-01 20 24523880 24523880 G A SYNDIG1 Silent p.Q49Q 0.06 TCGA-BR-4357-01 20 2621798 2621798 C T TMC2 Missense_Mutation p.A841V 0.35 tolerated(0.3) benign(0.033) TCGA-BR-4357-01 20 33330312 33330312 C A NCOA6 Nonsense_Mutation p.G1250* 0.04 TCGA-BR-4357-01 20 37121694 37121694 C G RALGAPB Missense_Mutation p.S103C 0.19 tolerated(0.32) probably_damaging(0.999) TCGA-BR-4357-01 20 37529251 37529251 G A PPP1R16B Silent p.S165S 0.17 TCGA-BR-4357-01 20 39750719 39750719 G C TOP1 Missense_Mutation p.D707H 0.04 deleterious(0) probably_damaging(0.997) TCGA-BR-4357-01 20 41514542 41514542 T C PTPRT Missense_Mutation p.N40S 0.07 tolerated(0.96) benign(0.006) TCGA-BR-4357-01 20 42213676 42213676 C G SGK2 3'UTR 0.54 TCGA-BR-4357-01 20 42788489 42788489 C T JPH2 Missense_Mutation p.R313H 0.61 tolerated(0.05) probably_damaging(0.945) TCGA-BR-4357-01 20 43850999 43850999 T A SEMG2 Missense_Mutation p.H242Q 0.46 tolerated(0.44) possibly_damaging(0.883) TCGA-BR-4357-01 20 47989961 47989961 C T KCNB1 Silent p.T712T 0.10 TCGA-BR-4357-01 20 60985727 60985727 G A RBBP8NL 3'UTR 0.27 TCGA-BR-4357-01 20 62070073 62070073 C T KCNQ2 Missense_Mutation p.G310S 0.76 deleterious(0) probably_damaging(0.986) TCGA-BR-4357-01 20 9459579 9459579 G A PLCB4 Missense_Mutation p.A1170T 0.20 tolerated_low_confidence(0.35) benign(0.003) TCGA-BR-4357-01 21 15889299 15889299 C T SAMSN1 Missense_Mutation p.G133S 0.44 tolerated(1) benign(0.01) TCGA-BR-4357-01 21 38593929 38593929 C T DSCR3 3'Flank 0.26 TCGA-BR-4357-01 22 33245467 33245467 G C TIMP3 Missense_Mutation p.K50N 0.30 deleterious(0) probably_damaging(0.967) TCGA-BR-4357-01 2 145157322 145157322 A C ZEB2 Missense_Mutation p.C478G 0.38 tolerated(0.62) possibly_damaging(0.635) TCGA-BR-4357-01 2 160708776 160708776 T G LY75-CD302 Missense_Mutation p.K940T 0.19 tolerated(0.24) benign(0.121) TCGA-BR-4357-01 2 168096364 168096364 G T XIRP2 Splice_Site p.X287_splice 0.12 TCGA-BR-4357-01 2 168105231 168105231 A C XIRP2 Missense_Mutation p.K2443N 0.19 benign(0.045) TCGA-BR-4357-01 2 169938295 169938295 T C DHRS9 Silent p.A68A 0.08 TCGA-BR-4357-01 2 179403391 179403391 G T TTN Missense_Mutation p.D33055E 0.18 TCGA-BR-4357-01 2 179435132 179435132 C G TTN Missense_Mutation p.E25243Q 0.25 TCGA-BR-4357-01 2 179578671 179578671 T G TTN Missense_Mutation p.Q8905P 0.20 TCGA-BR-4357-01 2 185800895 185800895 C A ZNF804A Missense_Mutation p.H258N 0.16 tolerated(1) probably_damaging(0.954) TCGA-BR-4357-01 2 200136825 200136825 A - SATB2 3'UTR 0.28 TCGA-BR-4357-01 2 215593709 215593709 G A BARD1 Silent p.C675C 0.34 TCGA-BR-4357-01 2 219029003 219029003 T G CXCR1 Missense_Mutation p.N311T 0.05 deleterious(0) benign(0.101) TCGA-BR-4357-01 2 223066852 223066852 C T PAX3 Missense_Mutation p.A411T 0.19 deleterious_low_confidence(0.03) possibly_damaging(0.843) TCGA-BR-4357-01 2 229890734 229890734 T C PID1 Missense_Mutation p.T121A 0.10 tolerated(0.2) benign(0.009) TCGA-BR-4357-01 2 238725997 238725997 T A RBM44 Missense_Mutation p.F146L 0.21 tolerated(0.12) benign(0.255) TCGA-BR-4357-01 2 239176732 239176732 A C PER2 Missense_Mutation p.L311R 0.12 deleterious(0) possibly_damaging(0.83) TCGA-BR-4357-01 2 28531502 28531502 C T BRE Intron 0.54 TCGA-BR-4357-01 2 48925758 48925758 T C LHCGR Missense_Mutation p.K288E 0.27 tolerated(0.19) benign(0.005) TCGA-BR-4357-01 2 79349196 79349196 A C REG1A Missense_Mutation p.K89T 0.20 deleterious(0) possibly_damaging(0.858) TCGA-BR-4357-01 2 86669284 86669284 C T KDM3A Silent p.V38V 0.24 TCGA-BR-4357-01 3 113322863 113322864 - C SIDT1 Frame_Shift_Ins p.Y441Lfs*2 0.12 TCGA-BR-4357-01 3 122422676 122422676 G C PARP14 Missense_Mutation p.E1057Q 0.22 tolerated(0.34) benign(0.014) TCGA-BR-4357-01 3 129817148 129817148 C T AC083906.2 3'Flank 0.12 TCGA-BR-4357-01 3 136573735 136573735 G T SLC35G2 Missense_Mutation p.V145F 0.24 deleterious(0.05) possibly_damaging(0.481) TCGA-BR-4357-01 3 138739163 138739163 G A PRR23B Missense_Mutation p.A114V 0.57 tolerated(0.4) possibly_damaging(0.752) TCGA-BR-4357-01 3 142102207 142102207 C T XRN1 Missense_Mutation p.D851N 0.18 deleterious(0) benign(0.091) TCGA-BR-4357-01 3 167402064 167402064 C T PDCD10 3'UTR 0.10 TCGA-BR-4357-01 3 186335007 186335007 A G AHSG Silent p.Q147Q 0.13 TCGA-BR-4357-01 3 38597190 38597190 T G SCN5A Missense_Mutation p.K1500T 0.08 deleterious(0) probably_damaging(0.999) TCGA-BR-4357-01 3 48510489 48510489 G C SHISA5 3'UTR 0.14 TCGA-BR-4357-01 3 48697355 48697355 G A CELSR3 Missense_Mutation p.R905C 0.18 deleterious(0.01) probably_damaging(1) TCGA-BR-4357-01 3 49044890 49044890 G A WDR6 Nonsense_Mutation p.W39* 0.21 TCGA-BR-4357-01 3 49897278 49897278 G A CAMKV Missense_Mutation p.R327W 0.24 deleterious(0) probably_damaging(0.969) TCGA-BR-4357-01 3 50311057 50311057 A G SEMA3B RNA 0.25 TCGA-BR-4357-01 3 58376310 58376310 G T PXK Missense_Mutation p.E130D 0.14 tolerated(0.09) benign(0.062) TCGA-BR-4357-01 3 77657104 77657104 G T ROBO2 Missense_Mutation p.G1114C 0.27 deleterious(0) probably_damaging(0.965) TCGA-BR-4357-01 4 113539455 113539455 A G C4orf21 Silent p.C581C 0.26 TCGA-BR-4357-01 4 151836777 151836777 A C LRBA Missense_Mutation p.F333V 0.10 tolerated(0.32) benign(0.259) TCGA-BR-4357-01 4 155487704 155487704 A G FGB Missense_Mutation p.R124G 0.06 deleterious(0.05) benign(0.24) TCGA-BR-4357-01 4 159825674 159825674 A T FNIP2 Missense_Mutation p.Y1108F 0.06 tolerated(0.07) benign(0.17) TCGA-BR-4357-01 4 186336377 186336377 T A UFSP2 Nonsense_Mutation p.K206* 0.26 TCGA-BR-4357-01 4 186423589 186423589 G A PDLIM3 Silent p.F318F 0.23 TCGA-BR-4357-01 4 25678198 25678198 G C SLC34A2 Missense_Mutation p.D634H 0.25 tolerated_low_confidence(0.06) benign(0.014) TCGA-BR-4357-01 4 39343980 39343984 ATGTA - RFC1 Frame_Shift_Del p.T105Hfs*6 0.20 TCGA-BR-4357-01 4 5468493 5468493 C A STK32B Missense_Mutation p.L325I 0.30 tolerated(0.09) probably_damaging(0.942) TCGA-BR-4357-01 4 73927606 73927606 C T COX18 Missense_Mutation p.R251H 0.18 deleterious(0.04) benign(0.161) TCGA-BR-4357-01 4 96091445 96091445 C T UNC5C Silent p.A830A 0.07 TCGA-BR-4357-01 4 9784423 9784423 G A DRD5 Missense_Mutation p.R257H 0.30 deleterious(0.01) benign(0.351) TCGA-BR-4357-01 5 118484729 118484729 A G DMXL1 Silent p.R1069R 0.47 TCGA-BR-4357-01 5 121188128 121188128 T G FTMT Missense_Mutation p.L157R 0.04 deleterious(0.01) probably_damaging(0.997) TCGA-BR-4357-01 5 127607789 127607789 T G FBN2 Missense_Mutation p.N2621T 0.29 tolerated(0.22) benign(0.02) TCGA-BR-4357-01 5 13708305 13708305 A G DNAH5 Missense_Mutation p.I4422T 0.43 benign(0.415) TCGA-BR-4357-01 5 140209209 140209209 C T PCDHA6 Silent p.H511H 0.47 TCGA-BR-4357-01 5 140734941 140734941 G A PCDHGA4 Silent p.E58E 0.10 TCGA-BR-4357-01 5 140752271 140752271 A C PCDHGB3 Silent p.I770I 0.53 TCGA-BR-4357-01 5 145529216 145529216 T C LARS Missense_Mutation p.K491R 0.45 deleterious(0.02) probably_damaging(0.934) TCGA-BR-4357-01 5 145859463 145859463 C G TCERG1 Missense_Mutation p.S603C 0.23 tolerated(0.07) unknown(0) TCGA-BR-4357-01 5 15936809 15936809 C T FBXL7 Silent p.S330S 0.21 TCGA-BR-4357-01 5 159478161 159478161 G T TTC1 Missense_Mutation p.R239L 0.05 deleterious(0) possibly_damaging(0.564) TCGA-BR-4357-01 5 179193287 179193287 C A MAML1 Missense_Mutation p.Q426K 0.11 deleterious(0.01) probably_damaging(0.913) TCGA-BR-4357-01 5 180477150 180477150 C T BTNL9 Missense_Mutation p.L173F 0.57 deleterious(0.02) benign(0.071) TCGA-BR-4357-01 5 32789806 32789806 T G AC026703.1 Missense_Mutation p.V100G 0.21 possibly_damaging(0.504) TCGA-BR-4357-01 5 34998853 34998853 T G AGXT2 Missense_Mutation p.T506P 0.41 tolerated(0.11) benign(0.053) TCGA-BR-4357-01 5 35035336 35035336 A T AGXT2 Missense_Mutation p.I191N 0.19 deleterious(0) probably_damaging(0.989) TCGA-BR-4357-01 5 35861002 35861002 G T IL7R Missense_Mutation p.S44I 0.29 deleterious(0) probably_damaging(0.986) TCGA-BR-4357-01 5 36984938 36984938 C T NIPBL Silent p.D552D 0.48 TCGA-BR-4357-01 5 7707834 7707834 T C ADCY2 Silent p.S428S 0.31 TCGA-BR-4357-01 5 9066581 9066581 C T SEMA5A Missense_Mutation p.E751K 0.20 deleterious(0) probably_damaging(0.994) TCGA-BR-4357-01 5 94114844 94114844 C T MCTP1 Missense_Mutation p.E861K 0.04 tolerated(0.28) probably_damaging(0.976) TCGA-BR-4357-01 6 106987348 106987348 T C AIM1 Silent p.L1189L 0.03 TCGA-BR-4357-01 6 112441542 112441542 G A LAMA4 Missense_Mutation p.H1537Y 0.10 tolerated(0.09) probably_damaging(0.968) TCGA-BR-4357-01 6 146720797 146720797 C A GRM1 Missense_Mutation p.N874K 0.18 deleterious(0) possibly_damaging(0.611) TCGA-BR-4357-01 6 155153435 155153435 T G SCAF8 Missense_Mutation p.L908V 0.02 tolerated_low_confidence(0.08) benign(0.113) TCGA-BR-4357-01 6 155750138 155750139 - G NOX3 Frame_Shift_Ins p.K312Tfs*5 0.20 TCGA-BR-4357-01 6 161653179 161653179 C A AGPAT4 Missense_Mutation p.A23S 0.37 tolerated(0.13) benign(0.11) TCGA-BR-4357-01 6 26199112 26199112 C G HIST1H2AD Missense_Mutation p.K120N 0.20 deleterious_low_confidence(0) benign(0.038) TCGA-BR-4357-01 6 26598628 26598628 G A ABT1 Missense_Mutation p.G192R 0.23 tolerated(0.08) probably_damaging(0.967) TCGA-BR-4357-01 6 32007956 32007956 G A CYP21A2 Missense_Mutation p.V305M 0.37 deleterious(0) possibly_damaging(0.847) TCGA-BR-4357-01 6 32168997 32168997 G A NOTCH4 Missense_Mutation p.R1346W 0.05 deleterious(0) possibly_damaging(0.513) TCGA-BR-4357-01 6 38850763 38850763 T G DNAH8 Missense_Mutation p.L2429V 0.03 probably_damaging(0.986) TCGA-BR-4357-01 6 44371709 44371709 C G CDC5L Missense_Mutation p.L235V 0.51 tolerated(0.55) benign(0.039) TCGA-BR-4357-01 6 50016282 50016282 T G DEFB112 Missense_Mutation p.K28T 0.10 tolerated(0.07) benign(0.403) TCGA-BR-4357-01 6 56417119 56417119 T C DST Missense_Mutation p.I2868V 0.28 benign(0.003) TCGA-BR-4357-01 6 56484155 56484155 A G DST Intron 0.04 TCGA-BR-4357-01 6 71185403 71185403 C T FAM135A Missense_Mutation p.S112F 0.42 tolerated(0.8) possibly_damaging(0.595) TCGA-BR-4357-01 7 100853950 100853950 C T PLOD3 Missense_Mutation p.V455M 0.26 tolerated(0.11) benign(0.059) TCGA-BR-4357-01 7 106786820 106786820 G T PRKAR2B Missense_Mutation p.G219W 0.35 deleterious(0) probably_damaging(1) TCGA-BR-4357-01 7 133994182 133994182 T A SLC35B4 Missense_Mutation p.I43F 0.09 deleterious(0) probably_damaging(0.989) TCGA-BR-4357-01 7 31611789 31611789 A C CCDC129 Missense_Mutation p.S154R 0.27 deleterious(0) possibly_damaging(0.872) TCGA-BR-4357-01 7 3678640 3678640 A G SDK1 Missense_Mutation p.I155V 0.10 tolerated(1) benign(0.004) TCGA-BR-4357-01 7 37890302 37890302 G T NME8 Nonsense_Mutation p.E55* 0.30 TCGA-BR-4357-01 7 37890313 37890313 A G NME8 Silent p.E58E 0.31 TCGA-BR-4357-01 7 37936592 37936592 G T NME8 Missense_Mutation p.Q555H 0.42 tolerated(0.1) benign(0.049) TCGA-BR-4357-01 7 43477736 43477736 C T HECW1 Silent p.H312H 0.19 TCGA-BR-4357-01 7 47451357 47451357 C T TNS3 Missense_Mutation p.E231K 0.29 deleterious(0) probably_damaging(0.982) TCGA-BR-4357-01 7 57188491 57188491 T G ZNF479 Missense_Mutation p.K211Q 0.46 deleterious(0.02) benign(0.335) TCGA-BR-4357-01 7 57188492 57188492 C A ZNF479 Missense_Mutation p.E210D 0.47 tolerated(0.05) probably_damaging(0.99) TCGA-BR-4357-01 7 64167982 64167982 C A ZNF107 Missense_Mutation p.H434N 0.07 deleterious(0) probably_damaging(0.998) TCGA-BR-4357-01 7 69364285 69364285 T G AUTS2 Missense_Mutation p.L108R 0.27 deleterious(0) benign(0.361) TCGA-BR-4357-01 7 76629696 76629696 C G UPK3B Intron 0.10 TCGA-BR-4357-01 7 87035760 87035760 A G ABCB4 Silent p.A1117A 0.21 TCGA-BR-4357-01 7 88964302 88964302 A T ZNF804B Missense_Mutation p.H669L 0.22 tolerated(0.68) benign(0.115) TCGA-BR-4357-01 7 89790313 89790313 A C STEAP1 Missense_Mutation p.E93D 0.09 tolerated(1) benign(0.005) TCGA-BR-4357-01 7 94928137 94928137 A G PON1 3'UTR 0.28 TCGA-BR-4357-01 7 99831243 99831243 A G GATS Silent p.D67D 0.35 TCGA-BR-4357-01 8 101932970 101932970 G A YWHAZ Missense_Mutation p.S230L 0.20 deleterious_low_confidence(0.04) possibly_damaging(0.853) TCGA-BR-4357-01 8 110424511 110424511 G A PKHD1L1 Silent p.G701G 0.08 TCGA-BR-4357-01 8 110527434 110527434 A C PKHD1L1 Missense_Mutation p.Q3863H 0.12 deleterious(0) probably_damaging(0.979) TCGA-BR-4357-01 8 113529404 113529404 G T CSMD3 Silent p.R1539R 0.11 TCGA-BR-4357-01 8 125334366 125334366 C A TMEM65 Silent p.V165V 0.10 TCGA-BR-4357-01 8 125463055 125463055 C T TRMT12 5'UTR 0.33 TCGA-BR-4357-01 8 12957933 12957933 C T DLC1 Missense_Mutation p.G638D 0.22 tolerated(0.1) benign(0.082) TCGA-BR-4357-01 8 12958076 12958076 C A DLC1 Missense_Mutation p.E590D 0.20 tolerated(0.1) benign(0.032) TCGA-BR-4357-01 8 132962265 132962265 G T EFR3A Missense_Mutation p.R139L 0.12 deleterious(0.01) benign(0.382) TCGA-BR-4357-01 8 144919888 144919888 G T NRBP2 Silent p.R294R 0.24 TCGA-BR-4357-01 8 144993129 144993129 G C PLEC Missense_Mutation p.I3757M 0.10 probably_damaging(0.99) TCGA-BR-4357-01 8 144993332 144993332 C G PLEC Missense_Mutation p.E3690Q 0.05 probably_damaging(0.98) TCGA-BR-4357-01 8 32621751 32621751 A G NRG1 Missense_Mutation p.D590G 0.08 tolerated(0.19) possibly_damaging(0.516) TCGA-BR-4357-01 8 7340238 7340238 A G DEFB106B Missense_Mutation p.L29P 0.17 deleterious(0) probably_damaging(0.991) TCGA-BR-4357-01 8 93004118 93004118 C T RUNX1T1 Splice_Site p.X258_splice 0.30 TCGA-BR-4357-01 8 93023265 93023265 A C RUNX1T1 Missense_Mutation p.F186V 0.25 deleterious(0) possibly_damaging(0.611) TCGA-BR-4357-01 8 99139913 99139913 A G POP1 Missense_Mutation p.K78R 0.16 tolerated(0.36) benign(0.009) TCGA-BR-4357-01 9 107367876 107367876 T A OR13C2 Missense_Mutation p.E11D 0.14 tolerated(0.06) probably_damaging(0.99) TCGA-BR-4357-01 9 114325440 114325440 C G PTGR1 Silent p.L317L 0.23 TCGA-BR-4357-01 9 116930585 116930585 C A COL27A1 Missense_Mutation p.F250L 0.11 unknown(0) TCGA-BR-4357-01 9 127999057 127999057 G C HSPA5 Silent p.T593T 0.14 TCGA-BR-4357-01 9 131038446 131038446 G A SWI5 Missense_Mutation p.D8N 0.12 tolerated_low_confidence(0.19) possibly_damaging(0.539) TCGA-BR-4357-01 9 13217225 13217225 T G MPDZ Missense_Mutation p.Q385H 0.24 deleterious(0.04) probably_damaging(0.996) TCGA-BR-4357-01 9 135278082 135278082 C A TTF1 Missense_Mutation p.V43L 0.18 tolerated(0.15) benign(0.417) TCGA-BR-4357-01 9 139734246 139734256 GACTGAAGAAT - RABL6 Frame_Shift_Del p.K623Gfs*17 0.27 TCGA-BR-4357-01 9 140711934 140711934 G A EHMT1 Missense_Mutation p.V1140M 0.23 deleterious(0) probably_damaging(0.998) TCGA-BR-4357-01 9 2718317 2718317 A G KCNV2 Missense_Mutation p.K193R 0.28 tolerated(0.41) benign(0.12) TCGA-BR-4357-01 9 86617850 86617850 T G RMI1 3'UTR 0.25 TCGA-BR-4357-01 X 100278521 100278521 G A TRMT2B Missense_Mutation p.R232C 0.35 tolerated(0.06) possibly_damaging(0.543) TCGA-BR-4357-01 X 10046905 10046905 G A WWC3 Missense_Mutation p.R96H 0.60 tolerated(0.07) benign(0.099) TCGA-BR-4357-01 X 105142676 105142676 A G NRK Missense_Mutation p.D227G 0.38 deleterious(0) possibly_damaging(0.581) TCGA-BR-4357-01 X 105193615 105193615 T A NRK Missense_Mutation p.L1469M 0.28 tolerated(0.12) probably_damaging(0.94) TCGA-BR-4357-01 X 109696362 109696362 T G RGAG1 Silent p.A839A 0.05 TCGA-BR-4357-01 X 109697340 109697340 G A RGAG1 Silent p.E1165E 0.32 TCGA-BR-4357-01 X 110435361 110435361 A C PAK3 Silent p.S315S 0.55 TCGA-BR-4357-01 X 14862735 14862735 G C FANCB Missense_Mutation p.I685M 0.61 deleterious(0.05) probably_damaging(0.95) TCGA-BR-4357-01 X 154282990 154282990 A T FUNDC2 3'UTR 0.09 TCGA-BR-4357-01 X 155004392 155004392 T A SPRY3 Missense_Mutation p.S287T 0.36 deleterious_low_confidence(0.01) benign(0.049) TCGA-BR-4357-01 X 32429933 32429933 T A DMD Missense_Mutation p.D1390V 0.48 probably_damaging(0.98) TCGA-BR-4357-01 X 47919190 47919190 T G ZNF630 Missense_Mutation p.K214T 0.04 tolerated(0.4) benign(0.01) TCGA-BR-4357-01 X 53655775 53655775 C T HUWE1 Missense_Mutation p.D348N 0.38 probably_damaging(0.978) TCGA-BR-4361-01 10 101458541 101458541 T - ENTPD7 Frame_Shift_Del p.Y423Ifs*33 0.32 TCGA-BR-4361-01 10 101472939 101472939 A C COX15 3'Flank 0.31 TCGA-BR-4361-01 10 101487291 101487291 T A COX15 Missense_Mutation p.D101V 0.30 deleterious(0.02) probably_damaging(0.916) TCGA-BR-4361-01 10 101992913 101992913 T A CWF19L1 3'UTR 0.42 TCGA-BR-4361-01 10 102566235 102566235 A G PAX2 Missense_Mutation p.D245G 0.05 tolerated(0.2) benign(0.342) TCGA-BR-4361-01 10 102684471 102684471 A G FAM178A Silent p.A571A 0.28 TCGA-BR-4361-01 10 102762542 102762542 G T LZTS2 Missense_Mutation p.V83F 0.27 tolerated(0.73) benign(0.029) TCGA-BR-4361-01 10 102799358 102799358 G A SFXN3 3'UTR 0.25 TCGA-BR-4361-01 10 102891794 102891794 G A TLX1 Missense_Mutation p.V166I 0.27 tolerated(0.22) benign(0.009) TCGA-BR-4361-01 10 103717427 103717427 T A C10orf76 Missense_Mutation p.I520F 0.14 deleterious(0) probably_damaging(0.993) TCGA-BR-4361-01 10 103899979 103899979 A G PPRC1 Missense_Mutation p.T572A 0.06 tolerated_low_confidence(1) benign(0.001) TCGA-BR-4361-01 10 104128145 104128146 CT - GBF1 Frame_Shift_Del p.S939Lfs*4 0.10 TCGA-BR-4361-01 10 104211207 104211207 C T C10orf95 Missense_Mutation p.A7T 0.20 deleterious_low_confidence(0) possibly_damaging(0.682) TCGA-BR-4361-01 10 104491950 104491950 G A SFXN2 Silent p.R232R 0.21 TCGA-BR-4361-01 10 104497475 104497475 T C SFXN2 Missense_Mutation p.Y309H 0.15 tolerated(0.55) benign(0.002) TCGA-BR-4361-01 10 104591290 104591290 C T CYP17A1 Nonsense_Mutation p.W406* 0.08 TCGA-BR-4361-01 10 104679214 104679214 T C CNNM2 Missense_Mutation p.V326A 0.41 tolerated(0.25) possibly_damaging(0.773) TCGA-BR-4361-01 10 104934730 104934730 A G NT5C2 5'UTR 0.18 TCGA-BR-4361-01 10 105182764 105182764 G A PDCD11 Silent p.T839T 0.24 TCGA-BR-4361-01 10 105642431 105642431 C T OBFC1 3'UTR 0.34 TCGA-BR-4361-01 10 106974273 106974273 C A SORCS3 Missense_Mutation p.P817T 0.43 deleterious(0) possibly_damaging(0.881) TCGA-BR-4361-01 10 112258064 112258064 C T DUSP5 Missense_Mutation p.A62V 0.17 deleterious(0.05) benign(0.013) TCGA-BR-4361-01 10 112356187 112356188 - G SMC3 Frame_Shift_Ins p.Y668Lfs*3 0.29 TCGA-BR-4361-01 10 112838169 112838169 C A ADRA2A Missense_Mutation p.L139M 0.13 deleterious(0) probably_damaging(0.997) TCGA-BR-4361-01 10 113913352 113913352 G A GPAM Nonsense_Mutation p.R815* 0.32 TCGA-BR-4361-01 10 115355426 115355426 G T NRAP Missense_Mutation p.P1498T 0.27 deleterious(0.02) probably_damaging(1) TCGA-BR-4361-01 10 115423699 115423699 C - NRAP 5'UTR 0.23 TCGA-BR-4361-01 10 115489357 115489357 T - CASP7 3'UTR 0.29 TCGA-BR-4361-01 10 115612525 115612525 C A DCLRE1A Missense_Mutation p.W139C 0.05 deleterious(0) probably_damaging(0.999) TCGA-BR-4361-01 10 115668305 115668305 T C NHLRC2 3'UTR 0.12 TCGA-BR-4361-01 10 115804211 115804211 T C ADRB1 Missense_Mutation p.M107T 0.27 deleterious(0) probably_damaging(0.988) TCGA-BR-4361-01 10 115973165 115973165 T C TDRD1 Missense_Mutation p.V631A 0.24 deleterious(0.01) probably_damaging(0.932) TCGA-BR-4361-01 10 116203839 116203839 G A ABLIM1 Missense_Mutation p.R628W 0.29 deleterious(0.01) possibly_damaging(0.786) TCGA-BR-4361-01 10 117309003 117309003 T C ATRNL1 Missense_Mutation p.V1251A 0.31 deleterious(0.01) probably_damaging(0.985) TCGA-BR-4361-01 10 117704300 117704300 A G ATRNL1 3'UTR 0.05 TCGA-BR-4361-01 10 117823895 117823895 T - GFRA1 3'UTR 0.41 TCGA-BR-4361-01 10 119001291 119001291 G A SLC18A2 Silent p.A29A 0.44 TCGA-BR-4361-01 10 119027216 119027216 A G SLC18A2 Missense_Mutation p.I385M 0.44 deleterious(0.04) benign(0.363) TCGA-BR-4361-01 10 119044331 119044331 T - PDZD8 Frame_Shift_Del p.N638Mfs*5 0.33 TCGA-BR-4361-01 10 12077531 12077531 A G UPF2 5'UTR 0.28 TCGA-BR-4361-01 10 121567530 121567530 T C INPP5F Silent p.G509G 0.21 TCGA-BR-4361-01 10 121677919 121677919 T A SEC23IP Missense_Mutation p.F590I 0.18 deleterious(0) probably_damaging(0.998) TCGA-BR-4361-01 10 124800876 124800876 C T ACADSB Missense_Mutation p.A221V 0.28 deleterious(0.02) possibly_damaging(0.448) TCGA-BR-4361-01 10 124914613 124914613 G A BUB3 Silent p.L60L 0.08 TCGA-BR-4361-01 10 125539730 125539730 T C CPXM2 Missense_Mutation p.T311A 0.08 deleterious(0.03) benign(0.214) TCGA-BR-4361-01 10 125601969 125601969 C T CPXM2 Silent p.A183A 0.25 TCGA-BR-4361-01 10 125805647 125805647 G - CHST15 Frame_Shift_Del p.H28Ifs*25 0.34 TCGA-BR-4361-01 10 127455204 127455204 T C MMP21 3'UTR 0.22 TCGA-BR-4361-01 10 127524753 127524753 A G BCCIP Intron 0.32 TCGA-BR-4361-01 10 128952176 128952176 C T FAM196A Missense_Mutation p.R399Q 0.10 deleterious(0) probably_damaging(0.999) TCGA-BR-4361-01 10 129691077 129691077 A - CLRN3 5'UTR 0.16 TCGA-BR-4361-01 10 129904261 129904261 G A MKI67 Missense_Mutation p.A1948V 0.31 tolerated(0.41) benign(0.032) TCGA-BR-4361-01 10 129906745 129906745 G C MKI67 Missense_Mutation p.T1120S 0.29 tolerated(0.32) benign(0.093) TCGA-BR-4361-01 10 13166057 13166057 G T OPTN Missense_Mutation p.E315D 0.20 deleterious(0.03) probably_damaging(0.997) TCGA-BR-4361-01 10 13337526 13337526 A G PHYH Missense_Mutation p.L72P 0.20 deleterious(0) probably_damaging(0.998) TCGA-BR-4361-01 10 134628370 134628370 C T TTC40 Missense_Mutation p.S2389N 0.05 tolerated(0.48) benign(0.001) TCGA-BR-4361-01 10 134750555 134750555 C T TTC40 Missense_Mutation p.R222H 0.36 tolerated(0.17) possibly_damaging(0.9) TCGA-BR-4361-01 10 14862076 14862077 - C CDNF Frame_Shift_Ins p.E156Gfs*11 0.30 TCGA-BR-4361-01 10 14950433 14950433 T - DCLRE1C Frame_Shift_Del p.R685Efs*6 0.32 TCGA-BR-4361-01 10 15325918 15325918 T C FAM171A1 Missense_Mutation p.Y95C 0.19 deleterious(0) probably_damaging(0.999) TCGA-BR-4361-01 10 15720763 15720763 G A ITGA8 Silent p.G196G 0.36 TCGA-BR-4361-01 10 15875660 15875660 T C FAM188A Silent p.V233V 0.06 TCGA-BR-4361-01 10 16967691 16967691 A G CUBN Silent p.C2118C 0.23 TCGA-BR-4361-01 10 18292319 18292319 C T SLC39A12 Intron 0.07 TCGA-BR-4361-01 10 20453414 20453414 A G PLXDC2 Silent p.T267T 0.31 TCGA-BR-4361-01 10 21805019 21805019 G C SKIDA1 Missense_Mutation p.A578G 0.29 tolerated(0.32) unknown(0) TCGA-BR-4361-01 10 22048437 22048437 C - DNAJC1 Frame_Shift_Del p.V420Wfs*54 0.35 TCGA-BR-4361-01 10 24909045 24909045 C T ARHGAP21 Silent p.L593L 0.32 TCGA-BR-4361-01 10 24910013 24910013 C T ARHGAP21 Missense_Mutation p.V271I 0.06 tolerated(0.16) benign(0.046) TCGA-BR-4361-01 10 26581462 26581462 A - GAD2 Frame_Shift_Del p.N487Tfs*37 0.27 TCGA-BR-4361-01 10 29760116 29760116 C - SVIL Frame_Shift_Del p.M1863Wfs*44 0.31 TCGA-BR-4361-01 10 30315149 30315149 G A KIAA1462 Missense_Mutation p.R1310C 0.29 deleterious(0.03) benign(0.409) TCGA-BR-4361-01 10 30615351 30615351 A G MTPAP Splice_Site p.X331_splice 0.31 TCGA-BR-4361-01 10 31134236 31134236 T C ZNF438 Missense_Mutation p.H714R 0.09 tolerated(0.38) benign(0.001) TCGA-BR-4361-01 10 31138295 31138295 G A ZNF438 Missense_Mutation p.P347S 0.16 tolerated(0.44) possibly_damaging(0.559) TCGA-BR-4361-01 10 3147695 3147695 T C PFKP Splice_Site p.X258_splice 0.06 TCGA-BR-4361-01 10 34620079 34620079 G A PARD3 Silent p.P936P 0.33 TCGA-BR-4361-01 10 35456558 35456559 - T CREM Intron 0.39 TCGA-BR-4361-01 10 410319 410319 C T DIP2C Silent p.R824R 0.13 TCGA-BR-4361-01 10 43015767 43015767 C T ZNF37BP RNA 0.18 TCGA-BR-4361-01 10 445160 445160 C A DIP2C Splice_Site p.X384_splice 0.28 TCGA-BR-4361-01 10 46918591 46918591 C T RP11-38L15.8 5'Flank 0.29 TCGA-BR-4361-01 10 48413624 48413624 T C GDF2 Missense_Mutation p.K415R 0.41 deleterious(0.02) benign(0.115) TCGA-BR-4361-01 10 48414131 48414131 G - GDF2 Frame_Shift_Del p.P246Qfs*27 0.32 TCGA-BR-4361-01 10 48426399 48426399 T C GDF10 3'UTR 0.42 TCGA-BR-4361-01 10 49450347 49450347 C T FRMPD2 Missense_Mutation p.E142K 0.37 deleterious(0) possibly_damaging(0.808) TCGA-BR-4361-01 10 50531160 50531160 T C C10orf71 Silent p.S190S 0.17 TCGA-BR-4361-01 10 50723435 50723435 C T ERCC6-PGBD3 Missense_Mutation p.E1044K 0.12 tolerated_low_confidence(0.73) unknown(0) TCGA-BR-4361-01 10 50820315 50820315 A T SLC18A3 Missense_Mutation p.E510V 0.11 tolerated(0.24) benign(0.001) TCGA-BR-4361-01 10 50954898 50954898 G A OGDHL Silent p.D398D 0.32 TCGA-BR-4361-01 10 5254588 5254588 C T AKR1C4 Missense_Mutation p.H194Y 0.08 deleterious(0.01) probably_damaging(1) TCGA-BR-4361-01 10 54527904 54527904 G A MBL2 Missense_Mutation p.P247L 0.31 deleterious(0) probably_damaging(0.972) TCGA-BR-4361-01 10 5781988 5781988 A G FAM208B Missense_Mutation p.S619G 0.28 tolerated(0.22) possibly_damaging(0.543) TCGA-BR-4361-01 10 5788345 5788345 G A FAM208B Silent p.Q987Q 0.44 TCGA-BR-4361-01 10 5788629 5788629 T C FAM208B Missense_Mutation p.L1082S 0.06 tolerated(0.15) benign(0.21) TCGA-BR-4361-01 10 5963252 5963252 T C FBXO18 Missense_Mutation p.V762A 0.28 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 10 5994981 5994981 A G IL15RA 3'UTR 0.24 TCGA-BR-4361-01 10 59986902 59986902 T C IPMK Splice_Site p.X93_splice 0.34 TCGA-BR-4361-01 10 60128572 60128572 T - UBE2D1 3'UTR 0.18 TCGA-BR-4361-01 10 61564176 61564176 A G CCDC6 Splice_Site p.X369_splice 0.35 TCGA-BR-4361-01 10 61815518 61815518 A G ANK3 Silent p.C4321C 0.12 TCGA-BR-4361-01 10 61835896 61835896 T C ANK3 Missense_Mutation p.I1581M 0.16 probably_damaging(0.979) TCGA-BR-4361-01 10 6257276 6257276 C T PFKFB3 Missense_Mutation p.R99W 0.38 possibly_damaging(0.553) TCGA-BR-4361-01 10 64414648 64414648 G A ZNF365 Intron 0.31 TCGA-BR-4361-01 10 64573060 64573060 G A EGR2 Silent p.G446G 0.37 TCGA-BR-4361-01 10 64966934 64966934 C T JMJD1C Missense_Mutation p.A1499T 0.31 tolerated(0.54) benign(0) TCGA-BR-4361-01 10 65140188 65140188 A G JMJD1C Missense_Mutation p.Y75H 0.06 tolerated(0.14) probably_damaging(0.998) TCGA-BR-4361-01 10 70192211 70192211 T - DNA2 Frame_Shift_Del p.N654Ifs*4 0.29 TCGA-BR-4361-01 10 70231557 70231557 G T DNA2 Missense_Mutation p.P108Q 0.39 deleterious(0.01) benign(0.426) TCGA-BR-4361-01 10 70332153 70332153 A - TET1 Frame_Shift_Del p.K22Rfs*23 0.35 TCGA-BR-4361-01 10 70406352 70406352 C T TET1 Missense_Mutation p.T1289M 0.28 tolerated(0.1) benign(0.085) TCGA-BR-4361-01 10 70644585 70644585 C T STOX1 Nonsense_Mutation p.R345* 0.33 TCGA-BR-4361-01 10 70930940 70930940 A - VPS26A Frame_Shift_Del p.K301Nfs*2 0.24 TCGA-BR-4361-01 10 71562400 71562400 G A COL13A1 Missense_Mutation p.R74H 0.24 tolerated_low_confidence(0.26) probably_damaging(0.988) TCGA-BR-4361-01 10 72628142 72628142 A G SGPL1 Missense_Mutation p.K219R 0.11 deleterious(0.04) probably_damaging(0.988) TCGA-BR-4361-01 10 73464824 73464824 C T CDH23 Missense_Mutation p.R556W 0.33 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 10 75010546 75010546 G A MRPS16 3'UTR 0.05 TCGA-BR-4361-01 10 75554018 75554018 A G ZSWIM8 Silent p.T913T 0.37 TCGA-BR-4361-01 10 75557598 75557598 C T ZSWIM8 Missense_Mutation p.A1241V 0.34 deleterious(0) probably_damaging(0.996) TCGA-BR-4361-01 10 75609032 75609032 T C CAMK2G Missense_Mutation p.H134R 0.19 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-BR-4361-01 10 75897994 75897994 G A AP3M1 Silent p.V48V 0.06 TCGA-BR-4361-01 10 76789593 76789593 G A KAT6B Missense_Mutation p.G1671S 0.31 probably_damaging(0.999) TCGA-BR-4361-01 10 76818210 76818210 C T DUPD1 Silent p.S21S 0.35 TCGA-BR-4361-01 10 76861702 76861702 G A DUSP13 Intron 0.29 TCGA-BR-4361-01 10 79745739 79745739 C T POLR3A Missense_Mutation p.R998H 0.29 tolerated(0.09) benign(0.022) TCGA-BR-4361-01 10 81050715 81050715 G T ZMIZ1 Splice_Site p.X181_splice 0.39 TCGA-BR-4361-01 10 81058191 81058191 A G ZMIZ1 Missense_Mutation p.Y507C 0.31 probably_damaging(0.99) TCGA-BR-4361-01 10 81841641 81841641 G A TMEM254 Silent p.G44G 0.39 TCGA-BR-4361-01 10 86001144 86001144 G - LRIT1 Frame_Shift_Del p.Q18Rfs*26 0.38 TCGA-BR-4361-01 10 88677075 88677075 A G BMPR1A Missense_Mutation p.N287S 0.11 deleterious(0.05) benign(0.146) TCGA-BR-4361-01 10 88768861 88768861 G A RP11-96C23.10 3'Flank 0.35 TCGA-BR-4361-01 10 89265036 89265036 A G MINPP1 Missense_Mutation p.T122A 0.44 tolerated(0.92) benign(0.001) TCGA-BR-4361-01 10 90122340 90122340 G A RNLS Silent p.F223F 0.31 TCGA-BR-4361-01 10 90492016 90492016 C T LIPK Silent p.Y168Y 0.35 TCGA-BR-4361-01 10 91144505 91144505 C T IFIT1B 3'UTR 0.16 TCGA-BR-4361-01 10 92617294 92617294 C T HTR7 Silent p.A45A 0.39 TCGA-BR-4361-01 10 93609348 93609348 A G TNKS2 Silent p.E897E 0.07 TCGA-BR-4361-01 10 93748905 93748921 TAATAGGTCACTACTGT AATAGGTCACTACTG BTAF1 Splice_Site p.X810_splice 0.20 TCGA-BR-4361-01 10 93748921 93748921 T - BTAF1 Frame_Shift_Del p.F814Lfs*10 0.22 TCGA-BR-4361-01 10 94268556 94268556 G T IDE Missense_Mutation p.P330H 0.06 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 10 95121229 95121229 T C MYOF Missense_Mutation p.N985S 0.06 tolerated(0.07) benign(0.328) TCGA-BR-4361-01 10 95241926 95241926 G A MYOF Missense_Mutation p.A9V 0.04 deleterious(0) benign(0.084) TCGA-BR-4361-01 10 95790955 95790955 C T PLCE1 Missense_Mutation p.S51F 0.32 deleterious_low_confidence(0.02) benign(0.11) TCGA-BR-4361-01 10 96109868 96109868 A G NOC3L Splice_Site p.X376_splice 0.09 TCGA-BR-4361-01 10 96117098 96117098 A - NOC3L Intron 0.26 TCGA-BR-4361-01 10 96350527 96350527 A G HELLS Silent p.E587E 0.38 TCGA-BR-4361-01 10 97081717 97081717 T C SORBS1 Intron 0.34 TCGA-BR-4361-01 10 98192586 98192586 G A TLL2 Silent p.Y166Y 0.34 TCGA-BR-4361-01 10 99344353 99344353 C T PI4K2A 5'UTR 0.32 TCGA-BR-4361-01 10 99683046 99683046 C T CRTAC1 Missense_Mutation p.R178H 0.29 deleterious(0) probably_damaging(0.993) TCGA-BR-4361-01 11 1015927 1015927 C - MUC6 Frame_Shift_Del p.V2292* 0.33 TCGA-BR-4361-01 11 101834511 101834511 A T KIAA1377 Missense_Mutation p.E915D 0.30 tolerated(0.08) benign(0.258) TCGA-BR-4361-01 11 1027331 1027331 C T MUC6 Missense_Mutation p.C723Y 0.31 unknown(0) TCGA-BR-4361-01 11 103866871 103866871 C T PDGFD Silent p.T144T 0.31 TCGA-BR-4361-01 11 103907980 103907980 G A DDI1 Missense_Mutation p.A144T 0.31 tolerated(0.07) benign(0.009) TCGA-BR-4361-01 11 104778203 104778203 A G RP11-693N9.2 RNA 0.21 TCGA-BR-4361-01 11 104820474 104820474 T C CASP4 Missense_Mutation p.T193A 0.14 tolerated(1) benign(0) TCGA-BR-4361-01 11 105481637 105481637 C T GRIA4 Intron 0.55 TCGA-BR-4361-01 11 107403026 107403026 C A ALKBH8 Missense_Mutation p.G293V 0.22 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 11 107536014 107536014 A G ELMOD1 3'UTR 0.32 TCGA-BR-4361-01 11 107965658 107965658 A - CUL5 Frame_Shift_Del p.N565Ifs*18 0.28 TCGA-BR-4361-01 11 108044308 108044308 G A NPAT Missense_Mutation p.A468V 0.26 tolerated(0.43) benign(0.015) TCGA-BR-4361-01 11 108098363 108098363 A G ATM Silent p.V4V 0.28 TCGA-BR-4361-01 11 108168081 108168081 A G ATM Missense_Mutation p.I1659M 0.16 tolerated(0.07) benign(0.132) TCGA-BR-4361-01 11 108544239 108544239 A - DDX10 Frame_Shift_Del p.T80Hfs*2 0.28 TCGA-BR-4361-01 11 108559696 108559696 C T DDX10 Silent p.V294V 0.04 TCGA-BR-4361-01 11 1096499 1096499 G A MUC2 Missense_Mutation p.R2175H 0.07 unknown(0) TCGA-BR-4361-01 11 111385697 111385697 G A C11orf88 Missense_Mutation p.R63H 0.31 deleterious(0.04) benign(0.28) TCGA-BR-4361-01 11 111558769 111558769 C T SIK2 Nonsense_Mutation p.R121* 0.31 TCGA-BR-4361-01 11 111618736 111618736 A G PPP2R1B Silent p.G447G 0.25 TCGA-BR-4361-01 11 115047097 115047097 A - CADM1 3'UTR 0.33 TCGA-BR-4361-01 11 115110994 115110994 G A CADM1 Missense_Mutation p.P91S 0.30 deleterious(0.05) possibly_damaging(0.769) TCGA-BR-4361-01 11 117073840 117073840 G A TAGLN Silent p.Q37Q 0.33 TCGA-BR-4361-01 11 117090382 117090382 T C PCSK7 Missense_Mutation p.I416M 0.29 deleterious(0) probably_damaging(0.936) TCGA-BR-4361-01 11 117266307 117266307 G A CEP164 Silent p.E986E 0.18 TCGA-BR-4361-01 11 118047235 118047235 A - SCN2B 5'UTR 0.41 TCGA-BR-4361-01 11 118065068 118065068 C - AMICA1 Frame_Shift_Del p.G386Efs*75 0.22 TCGA-BR-4361-01 11 118267261 118267261 T C UBE4A 3'UTR 0.25 TCGA-BR-4361-01 11 118516286 118516286 C T PHLDB1 Silent p.L1112L 0.04 TCGA-BR-4361-01 11 118770905 118770905 T C BCL9L Missense_Mutation p.T1043A 0.31 benign(0) TCGA-BR-4361-01 11 119003653 119003653 T C HINFP Missense_Mutation p.C319R 0.08 deleterious(0) probably_damaging(0.996) TCGA-BR-4361-01 11 119216273 119216273 G - MFRP Frame_Shift_Del p.N167Tfs*25 0.31 TCGA-BR-4361-01 11 120175748 120175748 C T POU2F3 Missense_Mutation p.H154Y 0.07 deleterious(0.01) benign(0.001) TCGA-BR-4361-01 11 120343776 120343776 G A ARHGEF12 Silent p.Q991Q 0.07 TCGA-BR-4361-01 11 120827592 120827592 G - GRIK4 Frame_Shift_Del p.F604Sfs*27 0.22 TCGA-BR-4361-01 11 121481852 121481852 G A SORL1 Missense_Mutation p.M1769I 0.10 tolerated(0.49) benign(0.003) TCGA-BR-4361-01 11 12237834 12237834 C T MICAL2 Nonsense_Mutation p.Q306* 0.06 TCGA-BR-4361-01 11 122774696 122774696 G T C11orf63 Missense_Mutation p.K136N 0.29 deleterious(0.04) benign(0.117) TCGA-BR-4361-01 11 122931470 122931470 G C HSPA8 Missense_Mutation p.A81G 0.24 deleterious_low_confidence(0.03) benign(0.001) TCGA-BR-4361-01 11 123676424 123676424 T C OR6M1 Missense_Mutation p.T212A 0.12 tolerated(0.53) benign(0.001) TCGA-BR-4361-01 11 123810556 123810556 C T OR4D5 Missense_Mutation p.A78V 0.30 tolerated(0.49) benign(0.004) TCGA-BR-4361-01 11 123847770 123847770 T C OR10S1 Missense_Mutation p.E210G 0.32 deleterious(0.01) possibly_damaging(0.834) TCGA-BR-4361-01 11 124180293 124180293 C T OR8D1 Missense_Mutation p.V124I 0.31 deleterious(0.03) benign(0.009) TCGA-BR-4361-01 11 124253240 124267246 11:124253240-124267246 - OR8B3 large deletion 0.12 TCGA-BR-4361-01 11 124487357 124487357 C T PANX3 Missense_Mutation p.P171L 0.28 deleterious(0.02) benign(0.379) TCGA-BR-4361-01 11 124624154 124624154 G A ESAM Silent p.Y271Y 0.38 TCGA-BR-4361-01 11 125887164 125887164 C T CDON Silent p.P249P 0.34 TCGA-BR-4361-01 11 126081527 126081527 C A RPUSD4 Missense_Mutation p.A3S 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.697) TCGA-BR-4361-01 11 126396434 126396434 T C KIRREL3 Silent p.S94S 0.39 TCGA-BR-4361-01 11 128350194 128350194 G T ETS1 Missense_Mutation p.L339M 0.26 deleterious(0.03) benign(0.122) TCGA-BR-4361-01 11 1298340 1298340 C T TOLLIP Missense_Mutation p.V252M 0.31 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 11 130281492 130281492 C T ADAMTS8 Missense_Mutation p.V524M 0.31 tolerated(0.13) benign(0.02) TCGA-BR-4361-01 11 133790374 133790374 G - IGSF9B Frame_Shift_Del p.T1083Pfs*48 0.19 TCGA-BR-4361-01 11 133790518 133790518 C T IGSF9B Silent p.G1034G 0.32 TCGA-BR-4361-01 11 134118244 134118244 A G THYN1 3'UTR 0.35 TCGA-BR-4361-01 11 14990515 14990515 C T CALCA Missense_Mutation p.G86S 0.32 tolerated(0.92) benign(0.112) TCGA-BR-4361-01 11 15212353 15212353 T C INSC Missense_Mutation p.I276T 0.19 deleterious(0.01) possibly_damaging(0.795) TCGA-BR-4361-01 11 16077437 16077437 G A SOX6 Missense_Mutation p.A371V 0.35 deleterious(0.04) probably_damaging(0.989) TCGA-BR-4361-01 11 16816142 16816142 G A PLEKHA7 Nonsense_Mutation p.R880* 0.32 TCGA-BR-4361-01 11 17112906 17112907 - T PIK3C2A Frame_Shift_Ins p.T1618Nfs*8 0.26 TCGA-BR-4361-01 11 17150966 17150966 A G PIK3C2A Silent p.L760L 0.26 TCGA-BR-4361-01 11 17408964 17408964 G A KCNJ11 Silent p.S225S 0.10 TCGA-BR-4361-01 11 17428579 17428579 G A ABCC8 Silent p.S1006S 0.34 TCGA-BR-4361-01 11 17530964 17530964 T C USH1C Missense_Mutation p.N651S 0.06 tolerated_low_confidence(0.13) benign(0) TCGA-BR-4361-01 11 17793376 17793376 T C KCNC1 Silent p.L245L 0.10 TCGA-BR-4361-01 11 17793706 17793706 C T KCNC1 Silent p.G355G 0.32 TCGA-BR-4361-01 11 18195607 18195607 C T MRGPRX4 Silent p.N268N 0.29 TCGA-BR-4361-01 11 1861658 1861658 G A TNNI2 Missense_Mutation p.R14H 0.27 deleterious(0) probably_damaging(0.999) TCGA-BR-4361-01 11 18955770 18955771 AT - MRGPRX1 Frame_Shift_Del p.V189Gfs*75 0.25 TCGA-BR-4361-01 11 19954827 19954827 C T NAV2 Missense_Mutation p.S369L 0.31 deleterious(0) probably_damaging(0.992) TCGA-BR-4361-01 11 20177851 20177851 G A DBX1 Missense_Mutation p.A353V 0.54 tolerated_low_confidence(0.08) probably_damaging(0.972) TCGA-BR-4361-01 11 22284591 22284591 T C ANO5 Splice_Site p.X633_splice 0.14 TCGA-BR-4361-01 11 22294393 22294393 T C ANO5 Missense_Mutation p.L698P 0.11 deleterious(0) probably_damaging(0.962) TCGA-BR-4361-01 11 2424406 2424406 C T TSSC4 Silent p.T181T 0.41 TCGA-BR-4361-01 11 28104461 28104461 T C KIF18A Missense_Mutation p.N402D 0.25 tolerated(0.97) benign(0) TCGA-BR-4361-01 11 30435828 30435828 G A MPPED2 Missense_Mutation p.T238M 0.26 deleterious(0) probably_damaging(0.998) TCGA-BR-4361-01 11 30517060 30517060 G A MPPED2 Missense_Mutation p.P107S 0.31 deleterious(0) possibly_damaging(0.613) TCGA-BR-4361-01 11 31616422 31616422 C T ELP4 Missense_Mutation p.R163C 0.22 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 11 32637520 32637520 T - CCDC73 Frame_Shift_Del p.E448Kfs*5 0.43 TCGA-BR-4361-01 11 33037960 33037960 C A DEPDC7 Intron 0.25 TCGA-BR-4361-01 11 33117933 33117933 T A CSTF3 Missense_Mutation p.I432F 0.06 deleterious(0) probably_damaging(0.954) TCGA-BR-4361-01 11 33369426 33369426 A T HIPK3 Missense_Mutation p.N725Y 0.32 deleterious(0) possibly_damaging(0.555) TCGA-BR-4361-01 11 34130297 34130297 A G NAT10 Missense_Mutation p.I39M 0.11 tolerated(0.11) possibly_damaging(0.804) TCGA-BR-4361-01 11 34194790 34194790 G A ABTB2 Missense_Mutation p.R437C 0.27 deleterious(0) possibly_damaging(0.727) TCGA-BR-4361-01 11 35685113 35685113 G A TRIM44 Missense_Mutation p.E152K 0.34 tolerated(0.27) unknown(0) TCGA-BR-4361-01 11 35827994 35827994 T C TRIM44 3'UTR 0.38 TCGA-BR-4361-01 11 380921 380921 G - B4GALNT4 Frame_Shift_Del p.G991Vfs*71 0.29 TCGA-BR-4361-01 11 43908177 43908177 C T ALKBH3 Silent p.I80I 0.10 TCGA-BR-4361-01 11 44255775 44255775 G A EXT2 Silent p.T672T 0.24 TCGA-BR-4361-01 11 4567047 4567047 G A OR52M1 Silent p.V209V 0.26 TCGA-BR-4361-01 11 45947886 45947886 G A GYLTL1B Silent p.A332A 0.33 TCGA-BR-4361-01 11 46394198 46394198 C T DGKZ Missense_Mutation p.R536W 0.42 deleterious(0.01) possibly_damaging(0.828) TCGA-BR-4361-01 11 46829614 46829614 G A CKAP5 Silent p.G315G 0.31 TCGA-BR-4361-01 11 47198140 47198140 T C ARFGAP2 Missense_Mutation p.T40A 0.09 deleterious(0) benign(0.087) TCGA-BR-4361-01 11 47399860 47399861 - G SPI1 Frame_Shift_Ins p.Q16Sfs*10 0.32 TCGA-BR-4361-01 11 47612348 47612348 C T C1QTNF4 Silent p.L5L 0.70 TCGA-BR-4361-01 11 47653245 47653245 C T MTCH2 Missense_Mutation p.A130T 0.28 tolerated(0.08) probably_damaging(1) TCGA-BR-4361-01 11 47712295 47712295 T C AGBL2 Missense_Mutation p.I322V 0.33 deleterious(0) probably_damaging(0.995) TCGA-BR-4361-01 11 48158680 48158680 T C PTPRJ Missense_Mutation p.S667P 0.36 tolerated(0.2) benign(0.078) TCGA-BR-4361-01 11 48238713 48238713 T C OR4B1 Missense_Mutation p.Y118H 0.25 deleterious(0) probably_damaging(0.999) TCGA-BR-4361-01 11 55110761 55110761 T - OR4A16 Frame_Shift_Del p.L30Yfs*6 0.31 TCGA-BR-4361-01 11 5529729 5529729 G - UBQLN3 Frame_Shift_Del p.Q354Sfs*3 0.20 TCGA-BR-4361-01 11 55406147 55406147 T G OR4P4 Missense_Mutation p.F105C 0.08 deleterious(0.01) probably_damaging(0.928) TCGA-BR-4361-01 11 55432731 55432731 T A OR4C6 Missense_Mutation p.L30H 0.08 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-BR-4361-01 11 55905019 55905019 A G OR8J3 Missense_Mutation p.M59T 0.28 deleterious(0) benign(0.309) TCGA-BR-4361-01 11 5624748 5624748 G A TRIM6 Missense_Mutation p.R97Q 0.19 tolerated(0.12) possibly_damaging(0.772) TCGA-BR-4361-01 11 56344778 56344778 A G OR5M10 Silent p.I140I 0.26 TCGA-BR-4361-01 11 56510841 56510841 A G OR9G4 Silent p.G149G 0.28 TCGA-BR-4361-01 11 56950045 56950045 G T LRRC55 Missense_Mutation p.E226D 0.30 tolerated(0.38) probably_damaging(0.987) TCGA-BR-4361-01 11 56950151 56950151 A G LRRC55 Missense_Mutation p.T262A 0.25 tolerated(0.47) benign(0.004) TCGA-BR-4361-01 11 57077906 57077906 C - TNKS1BP1 Frame_Shift_Del p.G760Vfs*65 0.31 TCGA-BR-4361-01 11 57146978 57146978 C T PRG3 Missense_Mutation p.A122T 0.32 tolerated(0.61) benign(0.011) TCGA-BR-4361-01 11 57147266 57147266 G - PRG3 Frame_Shift_Del p.H26Ifs*5 0.26 TCGA-BR-4361-01 11 57244233 57244233 G - RTN4RL2 Frame_Shift_Del p.G373Afs*151 0.40 TCGA-BR-4361-01 11 5809670 5809670 A G OR52N1 Missense_Mutation p.V126A 0.31 deleterious(0.01) benign(0.049) TCGA-BR-4361-01 11 58207279 58207279 T A OR5B12 Missense_Mutation p.M116L 0.31 deleterious_low_confidence(0.01) benign(0.197) TCGA-BR-4361-01 11 58972212 58972212 A G DTX4 Missense_Mutation p.T564A 0.16 deleterious(0) probably_damaging(0.999) TCGA-BR-4361-01 11 59425112 59425112 C T PATL1 Missense_Mutation p.R171Q 0.37 deleterious(0.04) possibly_damaging(0.774) TCGA-BR-4361-01 11 59573732 59573732 A G MRPL16 3'UTR 0.05 TCGA-BR-4361-01 11 60637322 60637322 C - ZP1 Frame_Shift_Del p.H212Tfs*10 0.25 TCGA-BR-4361-01 11 60699534 60699534 G - TMEM132A Frame_Shift_Del p.A434Pfs*5 0.33 TCGA-BR-4361-01 11 607110 607112 GAA - PHRF1 In_Frame_Del p.E552del 0.38 TCGA-BR-4361-01 11 60776004 60776004 A G CD6 Splice_Site p.X157_splice 0.45 TCGA-BR-4361-01 11 608885 608885 C T PHRF1 Silent p.H1142H 0.36 TCGA-BR-4361-01 11 61179396 61179396 G A CPSF7 Silent p.D409D 0.29 TCGA-BR-4361-01 11 61547022 61547022 C T MYRF Missense_Mutation p.P743S 0.54 tolerated(0.17) benign(0.184) TCGA-BR-4361-01 11 62285270 62285270 T C AHNAK Missense_Mutation p.D5540G 0.35 probably_damaging(0.954) TCGA-BR-4361-01 11 62327791 62327791 T C EEF1G Silent p.E331E 0.39 TCGA-BR-4361-01 11 62416494 62416494 C T INTS5 Missense_Mutation p.G353D 0.10 deleterious(0.04) possibly_damaging(0.741) TCGA-BR-4361-01 11 63999943 63999943 C T DNAJC4 Silent p.S74S 0.09 TCGA-BR-4361-01 11 64056707 64056707 C A GPR137 Missense_Mutation p.P433H 0.32 tolerated_low_confidence(0.09) benign(0.2) TCGA-BR-4361-01 11 64569202 64569203 - C MAP4K2 Frame_Shift_Ins p.K132Efs*23 0.27 TCGA-BR-4361-01 11 64573765 64573765 G A MEN1 Missense_Mutation p.R335C 0.36 deleterious(0) probably_damaging(0.976) TCGA-BR-4361-01 11 64665443 64665443 C T ATG2A Missense_Mutation p.R1621H 0.28 tolerated(0.61) benign(0.001) TCGA-BR-4361-01 11 64666107 64666107 C T ATG2A Splice_Site p.X1557_splice 0.34 TCGA-BR-4361-01 11 64708103 64708103 T G C11orf85 Missense_Mutation p.K163N 0.25 deleterious_low_confidence(0.03) probably_damaging(0.978) TCGA-BR-4361-01 11 64851183 64851183 G - CDCA5 Frame_Shift_Del p.P20Hfs*41 0.26 TCGA-BR-4361-01 11 64876853 64876853 G - VPS51 Frame_Shift_Del p.G517Vfs*42 0.37 TCGA-BR-4361-01 11 65307100 65307100 C A LTBP3 Splice_Site p.X1183_splice 0.32 TCGA-BR-4361-01 11 65351053 65351053 T C EHBP1L1 Silent p.G970G 0.13 TCGA-BR-4361-01 11 65386239 65386239 G - PCNXL3 Frame_Shift_Del p.A470Pfs*35 0.23 TCGA-BR-4361-01 11 65546619 65546619 G A AP5B1 Missense_Mutation p.R449W 0.35 tolerated(0.2) benign(0.001) TCGA-BR-4361-01 11 66053174 66053174 T C YIF1A Silent p.K161K 0.27 TCGA-BR-4361-01 11 66055105 66055105 G - YIF1A Frame_Shift_Del p.R131Gfs*50 0.30 TCGA-BR-4361-01 11 66392810 66392810 C T RBM14 Missense_Mutation p.A488V 0.06 deleterious(0.01) unknown(0) TCGA-BR-4361-01 11 66571567 66571567 A G C11orf80 Missense_Mutation p.D315G 0.07 tolerated(1) benign(0.086) TCGA-BR-4361-01 11 66618339 66618339 C T PC Missense_Mutation p.R760Q 0.25 deleterious(0) probably_damaging(0.985) TCGA-BR-4361-01 11 6662142 6662142 G - DCHS1 Frame_Shift_Del p.R235Gfs*9 0.27 TCGA-BR-4361-01 11 66639309 66639309 G A PC Missense_Mutation p.T57M 0.29 deleterious(0.03) probably_damaging(0.967) TCGA-BR-4361-01 11 67017751 67017751 T C KDM2A Silent p.S750S 0.14 TCGA-BR-4361-01 11 67161249 67161249 G A RAD9A Missense_Mutation p.R146H 0.20 tolerated(0.07) benign(0.022) TCGA-BR-4361-01 11 67168168 67168168 T C PPP1CA Missense_Mutation p.Y148C 0.14 deleterious_low_confidence(0) probably_damaging(1) TCGA-BR-4361-01 11 67203517 67203517 T C PTPRCAP Missense_Mutation p.D103G 0.16 deleterious(0.04) possibly_damaging(0.908) TCGA-BR-4361-01 11 67219255 67219255 G A GPR152 Missense_Mutation p.A314V 0.35 tolerated(0.11) benign(0.191) TCGA-BR-4361-01 11 67287283 67287283 G A CABP2 Silent p.D206D 0.36 TCGA-BR-4361-01 11 67804105 67804105 G A NDUFS8 3'UTR 0.38 TCGA-BR-4361-01 11 6816234 6816234 C T OR6A2 Missense_Mutation p.A236T 0.10 tolerated(0.17) benign(0.019) TCGA-BR-4361-01 11 68700870 68700870 G A IGHMBP2 Missense_Mutation p.A447T 0.17 tolerated(0.41) possibly_damaging(0.793) TCGA-BR-4361-01 11 7021758 7021758 A G ZNF214 Missense_Mutation p.Y386H 0.26 deleterious(0) possibly_damaging(0.509) TCGA-BR-4361-01 11 70265939 70265939 C T CTTN Missense_Mutation p.T219M 0.26 tolerated(0.07) probably_damaging(0.97) TCGA-BR-4361-01 11 71724239 71724239 A G NUMA1 Missense_Mutation p.L1437P 0.13 probably_damaging(1) TCGA-BR-4361-01 11 723324 723324 A G EPS8L2 Silent p.L475L 0.10 TCGA-BR-4361-01 11 73555944 73555944 T C MRPL48 Silent p.Y98Y 0.06 TCGA-BR-4361-01 11 74876980 74876980 A G SLCO2B1 Missense_Mutation p.D145G 0.10 deleterious(0.04) possibly_damaging(0.622) TCGA-BR-4361-01 11 75280189 75280189 T C SERPINH1 Silent p.G309G 0.21 TCGA-BR-4361-01 11 75283092 75283092 C T SERPINH1 Silent p.V407V 0.37 TCGA-BR-4361-01 11 77553633 77553633 G - AAMDC Frame_Shift_Del p.G32Vfs*23 0.20 TCGA-BR-4361-01 11 77774985 77774985 T C THRSP Missense_Mutation p.Y20H 0.10 deleterious(0) probably_damaging(0.989) TCGA-BR-4361-01 11 78368952 78368952 A - TENM4 3'UTR 0.36 TCGA-BR-4361-01 11 78413021 78413022 - CA TENM4 Frame_Shift_Ins p.A1546Vfs*85 0.23 TCGA-BR-4361-01 11 78467937 78467937 T C TENM4 Missense_Mutation p.N890S 0.30 tolerated(0.73) benign(0) TCGA-BR-4361-01 11 802588 802588 A C PIDD Missense_Mutation p.L310R 0.29 tolerated(0.42) benign(0.019) TCGA-BR-4361-01 11 8111723 8111723 A G TUB Silent p.E121E 0.16 TCGA-BR-4361-01 11 83172926 83172926 T C DLG2 Intron 0.20 TCGA-BR-4361-01 11 8478918 8478918 C T STK33 Missense_Mutation p.A223T 0.33 deleterious(0.03) possibly_damaging(0.833) TCGA-BR-4361-01 11 85345229 85345229 T C TMEM126B Silent p.H101H 0.17 TCGA-BR-4361-01 11 86157515 86157515 A - ME3 Frame_Shift_Del p.F465Lfs*10 0.35 TCGA-BR-4361-01 11 88027562 88027562 T A CTSC Missense_Mutation p.E335V 0.30 tolerated(0.26) benign(0.004) TCGA-BR-4361-01 11 92087727 92087727 C A FAT3 Missense_Mutation p.L817M 0.30 probably_damaging(1) TCGA-BR-4361-01 11 92533129 92533129 A G FAT3 Missense_Mutation p.E2317G 0.14 benign(0.008) TCGA-BR-4361-01 11 93454869 93454869 C T KIAA1731 Intron 0.29 TCGA-BR-4361-01 11 93911695 93911695 G A PANX1 Missense_Mutation p.R161H 0.39 tolerated(0.76) benign(0.003) TCGA-BR-4361-01 11 94199691 94199691 T - MRE11A Intron 0.31 TCGA-BR-4361-01 11 94278118 94278118 A G FUT4 Silent p.A273A 0.41 TCGA-BR-4361-01 11 9446771 9446771 C T IPO7 Silent p.L433L 0.05 TCGA-BR-4361-01 11 9452545 9452545 A G IPO7 Missense_Mutation p.K626E 0.13 tolerated(0.08) benign(0.081) TCGA-BR-4361-01 11 9456521 9456521 A G IPO7 Silent p.T705T 0.29 TCGA-BR-4361-01 11 94759243 94759243 A G KDM4E Silent p.T174T 0.30 TCGA-BR-4361-01 11 94862256 94862256 T C ENDOD1 Missense_Mutation p.F339S 0.13 deleterious(0) benign(0.265) TCGA-BR-4361-01 11 95561052 95561052 A G CEP57 Missense_Mutation p.I330V 0.35 tolerated(0.9) benign(0.001) TCGA-BR-4361-01 11 95724681 95724681 T C MAML2 Intron 0.15 TCGA-BR-4361-01 11 9875254 9875254 G A SBF2 Missense_Mutation p.A790V 0.32 deleterious(0) benign(0.443) TCGA-BR-4361-01 11 9990009 9990009 G A SBF2 Silent p.F493F 0.03 TCGA-BR-4361-01 12 100482808 100482808 T C UHRF1BP1L Silent p.V302V 0.07 TCGA-BR-4361-01 12 100904733 100904733 A T NR1H4 Missense_Mutation p.Y96F 0.07 tolerated(0.5) benign(0.02) TCGA-BR-4361-01 12 101017693 101017693 T C GAS2L3 Silent p.R370R 0.38 TCGA-BR-4361-01 12 101381326 101381326 A G ANO4 Silent p.K169K 0.06 TCGA-BR-4361-01 12 102158674 102158674 C T GNPTAB Missense_Mutation p.R674H 0.10 tolerated(0.08) probably_damaging(0.975) TCGA-BR-4361-01 12 102590100 102590100 A T PARPBP 3'UTR 0.17 TCGA-BR-4361-01 12 104030964 104030964 T G STAB2 Missense_Mutation p.L220R 0.10 deleterious(0) probably_damaging(0.999) TCGA-BR-4361-01 12 104123945 104123945 A G STAB2 Missense_Mutation p.S1712G 0.33 tolerated(0.6) benign(0.09) TCGA-BR-4361-01 12 104142848 104142848 G A STAB2 Missense_Mutation p.G2118R 0.23 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 12 10466091 10466091 G A KLRD1 Missense_Mutation p.G133D 0.29 deleterious(0.05) possibly_damaging(0.865) TCGA-BR-4361-01 12 104681126 104681126 T C TXNRD1 Intron 0.33 TCGA-BR-4361-01 12 104851156 104851156 C T CHST11 5'UTR 0.22 TCGA-BR-4361-01 12 105418218 105418218 A G ALDH1L2 Missense_Mutation p.V919A 0.27 deleterious(0) probably_damaging(0.953) TCGA-BR-4361-01 12 106763412 106763412 T C POLR3B Missense_Mutation p.Y119H 0.34 deleterious(0.04) possibly_damaging(0.624) TCGA-BR-4361-01 12 108082460 108082460 G A PWP1 Missense_Mutation p.R67H 0.27 tolerated(0.14) benign(0.092) TCGA-BR-4361-01 12 108589987 108589987 G T WSCD2 Missense_Mutation p.E126D 0.41 tolerated(0.69) benign(0.001) TCGA-BR-4361-01 12 108924060 108924060 G A SART3 Nonsense_Mutation p.Q592* 0.13 TCGA-BR-4361-01 12 108926095 108926095 G A SART3 Silent p.T524T 0.08 TCGA-BR-4361-01 12 109194580 109194580 G A SSH1 Missense_Mutation p.A375V 0.30 deleterious(0) possibly_damaging(0.695) TCGA-BR-4361-01 12 109604775 109604775 G - ACACB Frame_Shift_Del p.D257Ifs*17 0.29 TCGA-BR-4361-01 12 109674991 109674991 C T ACACB Missense_Mutation p.R1490C 0.29 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 12 109685462 109685462 C A ACACB Missense_Mutation p.L1875M 0.09 tolerated(0.37) benign(0.017) TCGA-BR-4361-01 12 109894111 109894111 C T KCTD10 Missense_Mutation p.D179N 0.35 deleterious(0) probably_damaging(0.999) TCGA-BR-4361-01 12 110206189 110206189 G A FAM222A Missense_Mutation p.S152N 0.42 tolerated(0.13) benign(0.109) TCGA-BR-4361-01 12 110246174 110246174 G A TRPV4 Silent p.S162S 0.18 TCGA-BR-4361-01 12 110834127 110834127 T C ANAPC7 Missense_Mutation p.K112E 0.28 deleterious(0) possibly_damaging(0.831) TCGA-BR-4361-01 12 111089019 111089019 T C HVCN1 Intron 0.25 TCGA-BR-4361-01 12 111121058 111121058 T C HVCN1 5'UTR 0.07 TCGA-BR-4361-01 12 111760355 111760355 C T CUX2 Missense_Mutation p.A966V 0.28 deleterious(0.03) possibly_damaging(0.574) TCGA-BR-4361-01 12 111907920 111907920 G A ATXN2 Missense_Mutation p.A1103V 0.39 benign(0.277) TCGA-BR-4361-01 12 111951319 111951319 G T ATXN2 Missense_Mutation p.A627D 0.24 probably_damaging(0.937) TCGA-BR-4361-01 12 112229927 112229927 G - ALDH2 Frame_Shift_Del p.K289Rfs*122 0.33 TCGA-BR-4361-01 12 112688056 112688056 G T HECTD4 Missense_Mutation p.P1135H 0.32 probably_damaging(0.992) TCGA-BR-4361-01 12 112924296 112924296 G A PTPN11 Silent p.T414T 0.11 TCGA-BR-4361-01 12 113379472 113379472 C T OAS3 Missense_Mutation p.A92V 0.32 tolerated(0.28) benign(0.003) TCGA-BR-4361-01 12 1137465 1137465 T A ERC1 Silent p.P132P 0.09 TCGA-BR-4361-01 12 113875888 113875888 G A SDSL 3'UTR 0.38 TCGA-BR-4361-01 12 116403940 116403940 A G MED13L Missense_Mutation p.W2112R 0.28 deleterious(0) probably_damaging(0.999) TCGA-BR-4361-01 12 116421280 116421280 G C MED13L Missense_Mutation p.P1533A 0.27 tolerated(0.17) unknown(0) TCGA-BR-4361-01 12 116428979 116428979 A G MED13L Silent p.S1260S 0.06 TCGA-BR-4361-01 12 116429691 116429691 G A MED13L Missense_Mutation p.T1023M 0.35 tolerated(0.24) unknown(0) TCGA-BR-4361-01 12 117603360 117603360 T C FBXO21 Missense_Mutation p.Y419C 0.14 tolerated(0.19) benign(0.018) TCGA-BR-4361-01 12 117665266 117665266 T C NOS1 Missense_Mutation p.T1230A 0.23 deleterious(0) probably_damaging(0.954) TCGA-BR-4361-01 12 118506221 118506221 T C VSIG10 Missense_Mutation p.N510D 0.24 tolerated(0.11) benign(0.055) TCGA-BR-4361-01 12 118588771 118588771 T C TAOK3 3'UTR 0.30 TCGA-BR-4361-01 12 119942961 119942961 G - CCDC60 Frame_Shift_Del p.S248Pfs*7 0.33 TCGA-BR-4361-01 12 121438866 121438866 A G HNF1A Splice_Site p.X590_splice 0.30 TCGA-BR-4361-01 12 121880281 121880281 G - KDM2B Frame_Shift_Del p.P988Rfs*55 0.18 TCGA-BR-4361-01 12 121958857 121958857 G A KDM2B Silent p.G326G 0.35 TCGA-BR-4361-01 12 122018773 122018773 G - KDM2B Frame_Shift_Del p.P15Hfs*92 0.26 TCGA-BR-4361-01 12 122702813 122702813 C A DIABLO Missense_Mutation p.K105N 0.30 deleterious(0) probably_damaging(0.955) TCGA-BR-4361-01 12 122812630 122812631 - T CLIP1 Frame_Shift_Ins p.T1038Nfs*4 0.40 TCGA-BR-4361-01 12 122992780 122992780 C A RSRC2 Missense_Mutation p.Q340H 0.26 deleterious(0.03) unknown(0) TCGA-BR-4361-01 12 123006781 123006781 T - RSRC2 Frame_Shift_Del p.E25Sfs*78 0.12 TCGA-BR-4361-01 12 123351983 123351983 G A VPS37B Silent p.L180L 0.06 TCGA-BR-4361-01 12 124106441 124106441 C T EIF2B1 Silent p.A260A 0.09 TCGA-BR-4361-01 12 124274609 124274609 A G DNAH10 Missense_Mutation p.S525G 0.05 benign(0.102) TCGA-BR-4361-01 12 124283835 124283835 T C DNAH10 Missense_Mutation p.Y618H 0.08 benign(0.41) TCGA-BR-4361-01 12 124422058 124422058 T C CCDC92 Silent p.S181S 0.09 TCGA-BR-4361-01 12 12483242 12483242 T C MANSC1 Missense_Mutation p.T339A 0.04 tolerated(1) benign(0) TCGA-BR-4361-01 12 125461903 125461903 T C DHX37 Missense_Mutation p.E291G 0.31 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 12 125473501 125473501 C G DHX37 Missense_Mutation p.G23A 0.14 tolerated(0.48) benign(0.002) TCGA-BR-4361-01 12 129566529 129566529 G A TMEM132D Silent p.R566R 0.20 TCGA-BR-4361-01 12 132400526 132400526 G A ULK1 Missense_Mutation p.R567H 0.31 deleterious(0) possibly_damaging(0.468) TCGA-BR-4361-01 12 132426240 132426240 C T PUS1 Silent p.R316R 0.05 TCGA-BR-4361-01 12 132491394 132491394 T - EP400 Frame_Shift_Del p.F1094Lfs*4 0.30 TCGA-BR-4361-01 12 132626443 132626443 G A DDX51 Missense_Mutation p.T316M 0.07 deleterious(0) probably_damaging(0.985) TCGA-BR-4361-01 12 133219487 133219487 G - POLE Frame_Shift_Del p.K1550Nfs*12 0.23 TCGA-BR-4361-01 12 133365855 133365855 G A GOLGA3 Missense_Mutation p.R857C 0.26 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 12 133374952 133374952 T C GOLGA3 Missense_Mutation p.I638V 0.35 deleterious(0.04) benign(0.071) TCGA-BR-4361-01 12 133768141 133768141 G A ZNF268 Missense_Mutation p.A101T 0.26 tolerated(0.35) possibly_damaging(0.732) TCGA-BR-4361-01 12 15068460 15068460 T C ERP27 Missense_Mutation p.Q246R 0.11 tolerated(0.23) benign(0.046) TCGA-BR-4361-01 12 18836124 18836124 C T PLCZ1 3'UTR 0.14 TCGA-BR-4361-01 12 2162730 2162730 T C CACNA1C Translation_Start_Site p.M1? 0.29 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-BR-4361-01 12 22025570 22025570 A G ABCC9 Silent p.V729V 0.26 TCGA-BR-4361-01 12 23998928 23998928 T - SOX5 Frame_Shift_Del p.N157Tfs*32 0.10 TCGA-BR-4361-01 12 25378562 25378562 C T KRAS Missense_Mutation p.A146T 0.29 deleterious(0.03) possibly_damaging(0.876) TCGA-BR-4361-01 12 26217646 26217646 C T RASSF8 Missense_Mutation p.P107S 0.29 deleterious(0) probably_damaging(0.994) TCGA-BR-4361-01 12 26775326 26775327 - T ITPR2 Frame_Shift_Ins p.N1045Kfs*6 0.26 TCGA-BR-4361-01 12 27069026 27069026 A - ASUN Frame_Shift_Del p.L386Cfs*11 0.22 TCGA-BR-4361-01 12 27944677 27944677 C G KLHL42 Silent p.L303L 0.32 TCGA-BR-4361-01 12 30833414 30833414 A G IPO8 Splice_Site p.X213_splice 0.25 TCGA-BR-4361-01 12 32369202 32369202 A G BICD1 Missense_Mutation p.I79V 0.29 tolerated(0.21) benign(0.003) TCGA-BR-4361-01 12 33031026 33031026 G A PKP2 Missense_Mutation p.T263M 0.30 deleterious(0.04) benign(0.31) TCGA-BR-4361-01 12 33538209 33538209 A G SYT10 Silent p.G365G 0.10 TCGA-BR-4361-01 12 34179676 34179676 T C ALG10 Silent p.R416R 0.05 TCGA-BR-4361-01 12 39734129 39734129 T - KIF21A Frame_Shift_Del p.V717Lfs*12 0.25 TCGA-BR-4361-01 12 40713870 40713870 A - LRRK2 Frame_Shift_Del p.R1639Gfs*15 0.25 TCGA-BR-4361-01 12 41414173 41414173 A C CNTN1 Missense_Mutation p.K818N 0.12 tolerated(0.23) benign(0.065) TCGA-BR-4361-01 12 41419019 41419019 A G CNTN1 Missense_Mutation p.Y864C 0.11 tolerated(0.11) possibly_damaging(0.873) TCGA-BR-4361-01 12 419071 419071 T - KDM5A Frame_Shift_Del p.V1093* 0.28 TCGA-BR-4361-01 12 42711240 42711240 T C ZCRB1 Missense_Mutation p.R79G 0.26 deleterious(0.02) benign(0.376) TCGA-BR-4361-01 12 44171500 44171500 T C IRAK4 Missense_Mutation p.Y262H 0.28 deleterious(0) probably_damaging(0.993) TCGA-BR-4361-01 12 45797269 45797269 A G ANO6 Missense_Mutation p.I631M 0.32 deleterious(0) probably_damaging(0.993) TCGA-BR-4361-01 12 45814903 45814903 A G ANO6 Missense_Mutation p.Y777C 0.30 deleterious(0.03) probably_damaging(0.979) TCGA-BR-4361-01 12 47163208 47163208 G A SLC38A4 Missense_Mutation p.R435C 0.24 deleterious(0.02) probably_damaging(0.998) TCGA-BR-4361-01 12 47628998 47628998 G - PCED1B Frame_Shift_Del p.E53Sfs*2 0.37 TCGA-BR-4361-01 12 48084302 48084302 T - RPAP3 Frame_Shift_Del p.D223Ifs*6 0.26 TCGA-BR-4361-01 12 4848407 4848407 T C GALNT8 Silent p.I196I 0.10 TCGA-BR-4361-01 12 49425292 49425292 A G KMT2D Missense_Mutation p.L4399P 0.20 unknown(0) TCGA-BR-4361-01 12 49435307 49435307 G A KMT2D Silent p.S2082S 0.07 TCGA-BR-4361-01 12 49440135 49440136 GT - KMT2D Frame_Shift_Del p.H1497Lfs*30 0.30 TCGA-BR-4361-01 12 49484937 49484937 T C DHH Missense_Mutation p.N180S 0.04 tolerated(0.23) benign(0.002) TCGA-BR-4361-01 12 49719633 49719633 G A TROAP Missense_Mutation p.G200D 0.36 tolerated(0.05) benign(0.284) TCGA-BR-4361-01 12 49934785 49934785 C T KCNH3 Silent p.V60V 0.30 TCGA-BR-4361-01 12 50348487 50348487 C T AQP2 Silent p.D200D 0.20 TCGA-BR-4361-01 12 50387958 50387958 G A RACGAP1 Missense_Mutation p.P432L 0.09 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 12 50869432 50869432 A T LARP4 Missense_Mutation p.N654Y 0.04 deleterious(0.01) possibly_damaging(0.67) TCGA-BR-4361-01 12 52309152 52309152 G A ACVRL1 Missense_Mutation p.A306T 0.28 tolerated(0.17) benign(0.015) TCGA-BR-4361-01 12 52312813 52312813 A G ACVRL1 Missense_Mutation p.N431D 0.27 deleterious(0.01) benign(0.064) TCGA-BR-4361-01 12 52646140 52646140 G A KRT7 3'Flank 0.09 TCGA-BR-4361-01 12 53044122 53044124 CTT - KRT2 Splice_Site p.X267_splice 0.36 TCGA-BR-4361-01 12 53460135 53460136 - C SPRYD3 Frame_Shift_Ins p.E386Gfs*8 0.29 TCGA-BR-4361-01 12 53647543 53647543 C T MFSD5 Silent p.H415H 0.32 TCGA-BR-4361-01 12 53776296 53776296 T C SP1 Missense_Mutation p.F189L 0.12 tolerated(0.34) possibly_damaging(0.483) TCGA-BR-4361-01 12 54115379 54115379 C T CALCOCO1 Silent p.G210G 0.32 TCGA-BR-4361-01 12 54971212 54971212 T C PPP1R1A 3'Flank 0.10 TCGA-BR-4361-01 12 55421128 55421128 C - NEUROD4 Frame_Shift_Del p.R304Vfs*6 0.30 TCGA-BR-4361-01 12 56086971 56086971 G T ITGA7 Missense_Mutation p.P893H 0.32 tolerated(0.07) possibly_damaging(0.794) TCGA-BR-4361-01 12 56221646 56221646 A G DNAJC14 Missense_Mutation p.V266A 0.24 deleterious(0) probably_damaging(0.916) TCGA-BR-4361-01 12 56487146 56487146 T C ERBB3 Missense_Mutation p.L431S 0.05 deleterious(0) probably_damaging(0.996) TCGA-BR-4361-01 12 56630390 56630392 AGA - SLC39A5 In_Frame_Del p.K357del 0.45 TCGA-BR-4361-01 12 56638574 56638574 G - ANKRD52 Frame_Shift_Del p.L862Ffs*23 0.26 TCGA-BR-4361-01 12 56726984 56726984 C T PAN2 5'UTR 0.42 TCGA-BR-4361-01 12 56755285 56755285 C - APOF Frame_Shift_Del p.P236Lfs*4 0.33 TCGA-BR-4361-01 12 56817439 56817439 C T TIMELESS Silent p.E673E 0.09 TCGA-BR-4361-01 12 57110008 57110008 G A NACA Intron 0.22 TCGA-BR-4361-01 12 57423603 57423603 A G MYO1A Missense_Mutation p.L882P 0.32 deleterious(0) possibly_damaging(0.793) TCGA-BR-4361-01 12 57571369 57571369 C T LRP1 Silent p.D1452D 0.41 TCGA-BR-4361-01 12 57573602 57573602 C T LRP1 Silent p.V1668V 0.05 TCGA-BR-4361-01 12 57592013 57592013 C T LRP1 Silent p.C3119C 0.31 TCGA-BR-4361-01 12 57592261 57592261 A G LRP1 Missense_Mutation p.T3162A 0.13 possibly_damaging(0.519) TCGA-BR-4361-01 12 57919175 57919175 C - MBD6 Frame_Shift_Del p.S144Lfs*35 0.28 TCGA-BR-4361-01 12 57921002 57921002 C - MBD6 Frame_Shift_Del p.Q694Sfs*5 0.30 TCGA-BR-4361-01 12 57957311 57957311 T C KIF5A Splice_Site p.X73_splice 0.14 TCGA-BR-4361-01 12 58004055 58004056 - G ARHGEF25 Frame_Shift_Ins p.M22Hfs*29 0.32 TCGA-BR-4361-01 12 6230409 6230409 A G VWF Missense_Mutation p.Y51H 0.27 deleterious(0) probably_damaging(0.996) TCGA-BR-4361-01 12 63195674 63195674 G - PPM1H Frame_Shift_Del p.T227Hfs*30 0.21 TCGA-BR-4361-01 12 63195910 63195910 A G PPM1H Missense_Mutation p.S148P 0.23 deleterious(0.01) benign(0.146) TCGA-BR-4361-01 12 64505760 64505760 A G SRGAP1 Missense_Mutation p.D713G 0.35 tolerated(0.07) benign(0.358) TCGA-BR-4361-01 12 66308838 66308838 G T HMGA2 Intron 0.25 TCGA-BR-4361-01 12 66641827 66641827 C A IRAK3 Missense_Mutation p.P556H 0.25 deleterious_low_confidence(0.01) benign(0.155) TCGA-BR-4361-01 12 66703603 66703603 T C HELB Missense_Mutation p.S299P 0.09 deleterious(0.05) possibly_damaging(0.703) TCGA-BR-4361-01 12 66731962 66731962 A - HELB 3'UTR 0.38 TCGA-BR-4361-01 12 66849209 66849209 T - GRIP1 Frame_Shift_Del p.K393Rfs*10 0.12 TCGA-BR-4361-01 12 6700956 6700956 G A CHD4 Silent p.G1042G 0.07 TCGA-BR-4361-01 12 6701672 6701672 T - CHD4 Frame_Shift_Del p.K945Nfs*28 0.08 TCGA-BR-4361-01 12 675056 675056 G A NINJ2 Intron 0.11 TCGA-BR-4361-01 12 69135681 69135681 T C NUP107 Missense_Mutation p.I864T 0.34 deleterious(0) benign(0.374) TCGA-BR-4361-01 12 69250279 69250279 C T CPM Missense_Mutation p.A424T 0.30 tolerated_low_confidence(0.14) benign(0.006) TCGA-BR-4361-01 12 70195448 70195448 A T RAB3IP Silent p.G375G 0.11 TCGA-BR-4361-01 12 7069334 7069334 T C PTPN6 Missense_Mutation p.Y505H 0.26 deleterious(0) probably_damaging(0.997) TCGA-BR-4361-01 12 70932062 70932062 A G PTPRB Intron 0.32 TCGA-BR-4361-01 12 71029640 71029640 A G PTPRB Missense_Mutation p.S88P 0.28 tolerated_low_confidence(0.35) benign(0.005) TCGA-BR-4361-01 12 71974204 71974204 G A LGR5 Splice_Site p.X518_splice 0.23 TCGA-BR-4361-01 12 72038781 72038781 T - ZFC3H1 Frame_Shift_Del p.K385Nfs*9 0.31 TCGA-BR-4361-01 12 7249400 7249400 G - C1RL Frame_Shift_Del p.L351Wfs*35 0.36 TCGA-BR-4361-01 12 77253398 77253398 C T CSRP2 Missense_Mutation p.R145Q 0.23 deleterious(0.02) possibly_damaging(0.648) TCGA-BR-4361-01 12 77449854 77449854 T C E2F7 Silent p.E50E 0.06 TCGA-BR-4361-01 12 8083863 8083863 A G SLC2A3 Missense_Mutation p.V163A 0.37 deleterious(0.04) benign(0.424) TCGA-BR-4361-01 12 8211659 8211659 T C C3AR1 Missense_Mutation p.T375A 0.23 tolerated(0.15) benign(0.046) TCGA-BR-4361-01 12 83359353 83359353 A G TMTC2 Missense_Mutation p.T567A 0.33 tolerated(0.1) benign(0.145) TCGA-BR-4361-01 12 85450662 85450662 A T LRRIQ1 Silent p.V697V 0.30 TCGA-BR-4361-01 12 86198792 86198792 A G RASSF9 Silent p.I332I 0.12 TCGA-BR-4361-01 12 89917838 89917840 AGG - GALNT4 In_Frame_Del p.P163del 0.25 TCGA-BR-4361-01 12 91358019 91358019 G A EPYC Nonsense_Mutation p.R295* 0.33 TCGA-BR-4361-01 12 93162797 93162797 A G PLEKHG7 Missense_Mutation p.N325D 0.27 deleterious(0.01) possibly_damaging(0.611) TCGA-BR-4361-01 12 93968430 93968430 C A SOCS2 Intron 0.36 TCGA-BR-4361-01 12 93968638 93968638 A G SOCS2 Missense_Mutation p.N94D 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-BR-4361-01 12 93968662 93968662 G A SOCS2 Missense_Mutation p.G102R 0.33 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 12 94580155 94580155 A T PLXNC1 Nonsense_Mutation p.R449* 0.29 TCGA-BR-4361-01 12 95603554 95603554 A G FGD6 Silent p.H502H 0.27 TCGA-BR-4361-01 12 95611568 95611568 C G VEZT 5'UTR 0.10 TCGA-BR-4361-01 12 96292432 96292432 T - CCDC38 Frame_Shift_Del p.A150Qfs*24 0.21 TCGA-BR-4361-01 12 96368117 96368118 - T HAL Frame_Shift_Ins p.Y623Ifs*33 0.11 TCGA-BR-4361-01 12 96641161 96641161 C T ELK3 Silent p.S217S 0.36 TCGA-BR-4361-01 12 97098550 97098550 T C C12orf55 Silent p.L2168L 0.23 TCGA-BR-4361-01 12 97102450 97102450 T C C12orf55 Missense_Mutation p.L2198P 0.11 deleterious(0) benign(0.038) TCGA-BR-4361-01 12 98849710 98849710 A G SLC9A7P1 RNA 0.05 TCGA-BR-4361-01 12 99174974 99174974 G A ANKS1B Missense_Mutation p.T1096I 0.50 deleterious(0) probably_damaging(0.998) TCGA-BR-4361-01 13 100196200 100196200 C T TM9SF2 Silent p.V367V 0.09 TCGA-BR-4361-01 13 100909900 100909900 G A PCCA Missense_Mutation p.R230H 0.30 deleterious(0) possibly_damaging(0.851) TCGA-BR-4361-01 13 101797171 101797171 T C NALCN Missense_Mutation p.N639S 0.10 tolerated(0.05) benign(0.269) TCGA-BR-4361-01 13 102375275 102375275 G A FGF14 Missense_Mutation p.T222M 0.32 deleterious(0.04) benign(0.094) TCGA-BR-4361-01 13 103474505 103474505 A C BIVM-ERCC5 Missense_Mutation p.E271D 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.801) TCGA-BR-4361-01 13 103528256 103528256 A - ERCC5 3'UTR 0.35 TCGA-BR-4361-01 13 108518350 108518350 C - FAM155A Frame_Shift_Del p.A199Rfs*9 0.30 TCGA-BR-4361-01 13 111176256 111176256 G A RAB20 Missense_Mutation p.A154V 0.20 deleterious(0.01) probably_damaging(1) TCGA-BR-4361-01 13 113770010 113770010 G A F7 Missense_Mutation p.G156D 0.22 deleterious(0) probably_damaging(0.997) TCGA-BR-4361-01 13 113772918 113772918 C A F7 Missense_Mutation p.L333M 0.31 deleterious(0.01) probably_damaging(0.949) TCGA-BR-4361-01 13 20797216 20797216 G A GJB6 Missense_Mutation p.T135M 0.30 deleterious(0) probably_damaging(0.985) TCGA-BR-4361-01 13 21557671 21557671 T C LATS2 Missense_Mutation p.N725S 0.06 tolerated(0.24) probably_damaging(0.998) TCGA-BR-4361-01 13 23906235 23906235 G A SACS Missense_Mutation p.A3927V 0.30 probably_damaging(0.986) TCGA-BR-4361-01 13 23914771 23914771 C T SACS Missense_Mutation p.D1082N 0.34 possibly_damaging(0.635) TCGA-BR-4361-01 13 24823711 24823711 C T SPATA13 Missense_Mutation p.R584W 0.29 deleterious(0) benign(0.004) TCGA-BR-4361-01 13 25075869 25075869 T C PARP4 Missense_Mutation p.K79R 0.05 tolerated(0.2) benign(0.038) TCGA-BR-4361-01 13 25264840 25264840 T C ATP12A Silent p.Y260Y 0.05 TCGA-BR-4361-01 13 25480479 25480479 C T CENPJ Missense_Mutation p.R566Q 0.35 tolerated(0.29) benign(0.007) TCGA-BR-4361-01 13 25670497 25670497 A G PABPC3 Missense_Mutation p.Y54C 0.25 deleterious(0) probably_damaging(0.999) TCGA-BR-4361-01 13 25745036 25745036 G A AMER2 Missense_Mutation p.T241M 0.40 tolerated(0.11) possibly_damaging(0.828) TCGA-BR-4361-01 13 27333371 27333371 G A GPR12 Silent p.N198N 0.23 TCGA-BR-4361-01 13 28124542 28124542 T C LNX2 Missense_Mutation p.N622S 0.28 tolerated(0.75) benign(0.173) TCGA-BR-4361-01 13 28367838 28367838 A G GSX1 Missense_Mutation p.Y183C 0.19 deleterious(0) possibly_damaging(0.756) TCGA-BR-4361-01 13 28862160 28862160 T C PAN3 Silent p.R808R 0.06 TCGA-BR-4361-01 13 31205398 31205398 A G USPL1 Missense_Mutation p.T219A 0.04 tolerated(0.56) benign(0.069) TCGA-BR-4361-01 13 31717998 31717998 T C HSPH1 Silent p.Q549Q 0.06 TCGA-BR-4361-01 13 32911074 32911074 A - BRCA2 Frame_Shift_Del p.N863Ifs*11 0.09 TCGA-BR-4361-01 13 32913347 32913347 A G BRCA2 Missense_Mutation p.N1619D 0.31 tolerated(0.36) benign(0.007) TCGA-BR-4361-01 13 32929041 32929041 G A BRCA2 Missense_Mutation p.A2351T 0.32 deleterious(0.05) possibly_damaging(0.586) TCGA-BR-4361-01 13 32972893 32972893 A - BRCA2 Frame_Shift_Del p.K3416Nfs*11 0.25 TCGA-BR-4361-01 13 35733985 35733985 C T NBEA Missense_Mutation p.A1226V 0.27 tolerated_low_confidence(0.37) benign(0.002) TCGA-BR-4361-01 13 35770145 35770145 T C NBEA Missense_Mutation p.L1691S 0.09 tolerated_low_confidence(0.07) benign(0.011) TCGA-BR-4361-01 13 36125104 36125104 A - NBEA Frame_Shift_Del p.V2250Lfs*10 0.26 TCGA-BR-4361-01 13 37453642 37453642 G A SMAD9 Missense_Mutation p.P62L 0.31 deleterious(0.02) probably_damaging(0.96) TCGA-BR-4361-01 13 37577117 37577117 T A EXOSC8 Missense_Mutation p.N55K 0.34 deleterious(0.03) benign(0.247) TCGA-BR-4361-01 13 37583829 37583829 G A SUPT20H Missense_Mutation p.P774S 0.26 tolerated(0.07) benign(0.043) TCGA-BR-4361-01 13 39265089 39265089 G A FREM2 Missense_Mutation p.G1203D 0.11 deleterious(0.05) probably_damaging(0.95) TCGA-BR-4361-01 13 39265723 39265723 C T FREM2 Silent p.I1414I 0.29 TCGA-BR-4361-01 13 39425215 39425215 A G FREM2 Missense_Mutation p.T2238A 0.27 tolerated(0.44) benign(0.064) TCGA-BR-4361-01 13 41705362 41705362 T C KBTBD6 Missense_Mutation p.D429G 0.06 tolerated(0.29) benign(0.029) TCGA-BR-4361-01 13 41768040 41768040 G A KBTBD7 Silent p.D118D 0.26 TCGA-BR-4361-01 13 42149902 42149902 T C VWA8 Missense_Mutation p.N1782D 0.16 tolerated(0.09) benign(0.319) TCGA-BR-4361-01 13 42873774 42873774 T - AKAP11 Frame_Shift_Del p.S300Rfs*30 0.26 TCGA-BR-4361-01 13 43872523 43872523 G A ENOX1 Nonsense_Mutation p.Q469* 0.33 TCGA-BR-4361-01 13 44463069 44463069 C T LACC1 Nonsense_Mutation p.Q362* 0.08 TCGA-BR-4361-01 13 46543669 46543691 CAATGCTTTTCTTTTTCTGTCCT TCAATGCTTTTCTTTTTCTGTCC ZC3H13 Missense_Mutation p.GQKKKSIE997DRKRKALK 0.13 TCGA-BR-4361-01 13 46554101 46554101 T C ZC3H13 Missense_Mutation p.S587G 0.08 probably_damaging(0.96) TCGA-BR-4361-01 13 48570976 48570976 A G SUCLA2 Splice_Site p.X91_splice 0.34 TCGA-BR-4361-01 13 48947548 48947548 A T RB1 Missense_Mutation p.M379L 0.23 tolerated(0.11) probably_damaging(0.932) TCGA-BR-4361-01 13 52004496 52004496 C T INTS6 Silent p.E121E 0.24 TCGA-BR-4361-01 13 52749871 52749871 T C MRPS31P5 RNA 0.09 TCGA-BR-4361-01 13 52854026 52854026 T C RP11-248G5.8 RNA 0.20 TCGA-BR-4361-01 13 53421057 53421057 C T PCDH8 Silent p.S505S 0.23 TCGA-BR-4361-01 13 60385030 60385030 T - DIAPH3 Frame_Shift_Del p.R1019Efs*12 0.27 TCGA-BR-4361-01 13 61041374 61041374 T C TDRD3 Missense_Mutation p.L119P 0.26 deleterious(0) possibly_damaging(0.79) TCGA-BR-4361-01 13 61985342 61985342 A G PCDH20 3'UTR 0.18 TCGA-BR-4361-01 13 67800539 67800539 T C PCDH9 Silent p.P678P 0.24 TCGA-BR-4361-01 13 76179869 76179869 C T UCHL3 Missense_Mutation p.A205V 0.24 deleterious(0) probably_damaging(0.971) TCGA-BR-4361-01 13 77652957 77652957 A G MYCBP2 Splice_Site p.X3790_splice 0.09 TCGA-BR-4361-01 13 77780843 77780843 T C MYCBP2 Silent p.L1140L 0.29 TCGA-BR-4361-01 13 77844428 77844428 T C MYCBP2 Intron 0.28 TCGA-BR-4361-01 13 78475267 78475267 A - EDNRB Frame_Shift_Del p.Y383Ifs*3 0.28 TCGA-BR-4361-01 13 88327790 88327790 C T SLITRK5 Silent p.D49D 0.31 TCGA-BR-4361-01 13 95121039 95121040 - A DCT Frame_Shift_Ins p.V186Cfs*9 0.25 TCGA-BR-4361-01 13 95886989 95886989 C T ABCC4 Missense_Mutation p.A136T 0.34 tolerated(0.39) benign(0.017) TCGA-BR-4361-01 13 97995277 97995277 T C MBNL2 Missense_Mutation p.F116S 0.43 tolerated(0.06) probably_damaging(0.918) TCGA-BR-4361-01 13 98658469 98658469 T A IPO5 Missense_Mutation p.V546D 0.11 deleterious(0) benign(0.255) TCGA-BR-4361-01 13 99947711 99947711 T C GPR183 Missense_Mutation p.N230S 0.10 deleterious(0) probably_damaging(0.93) TCGA-BR-4361-01 14 100604082 100604082 C T EVL Missense_Mutation p.P346L 0.31 tolerated(0.06) possibly_damaging(0.508) TCGA-BR-4361-01 14 101512793 101512793 T C MIR487B RNA 0.06 TCGA-BR-4361-01 14 102805235 102805235 G A ZNF839 Missense_Mutation p.R581Q 0.15 tolerated(0.84) benign(0.002) TCGA-BR-4361-01 14 104121164 104121164 T C KLC1 Splice_Site p.X87_splice 0.37 TCGA-BR-4361-01 14 104460920 104460920 C T TDRD9 Missense_Mutation p.P434S 0.33 tolerated(0.06) possibly_damaging(0.817) TCGA-BR-4361-01 14 105174185 105174185 C - INF2 Frame_Shift_Del p.V530Wfs*28 0.32 TCGA-BR-4361-01 14 105208219 105208219 C A ADSSL1 Silent p.T319T 0.28 TCGA-BR-4361-01 14 105406621 105406621 C - AHNAK2 Frame_Shift_Del p.G5056Vfs*30 0.33 TCGA-BR-4361-01 14 105409919 105409919 C T AHNAK2 Missense_Mutation p.A3957T 0.06 probably_damaging(0.96) TCGA-BR-4361-01 14 105411037 105411037 T C AHNAK2 Missense_Mutation p.D3584G 0.26 possibly_damaging(0.728) TCGA-BR-4361-01 14 105413365 105413365 G A AHNAK2 Missense_Mutation p.A2808V 0.09 possibly_damaging(0.613) TCGA-BR-4361-01 14 105419601 105419601 G A AHNAK2 Silent p.S729S 0.35 TCGA-BR-4361-01 14 105477960 105477960 G A CDCA4 Missense_Mutation p.R103C 0.41 deleterious(0.04) benign(0.189) TCGA-BR-4361-01 14 105936442 105936442 G A MTA1 Missense_Mutation p.A680T 0.22 deleterious(0.03) benign(0.283) TCGA-BR-4361-01 14 106610433 106610433 T C IGHV3-15 Silent p.T79T 0.27 TCGA-BR-4361-01 14 107170044 107170044 C T IGHV1-69 Missense_Mutation p.A80T 0.23 tolerated(0.15) benign(0.07) TCGA-BR-4361-01 14 19553425 19553425 T C POTEG Silent p.A3A 0.19 TCGA-BR-4361-01 14 20403942 20403942 G A OR4K1 Silent p.V39V 0.31 TCGA-BR-4361-01 14 20784646 20784646 G A CCNB1IP1 Nonsense_Mutation p.R13* 0.35 TCGA-BR-4361-01 14 20840980 20840980 C T TEP1 Missense_Mutation p.A2330T 0.28 tolerated(0.14) benign(0.005) TCGA-BR-4361-01 14 20917404 20917404 G A OSGEP Missense_Mutation p.R145C 0.25 tolerated(0.05) benign(0.159) TCGA-BR-4361-01 14 21424417 21424417 G A RNASE2 3'UTR 0.35 TCGA-BR-4361-01 14 21458133 21458133 A G METTL17 5'Flank 0.07 TCGA-BR-4361-01 14 21465126 21465126 T C METTL17 3'UTR 0.16 TCGA-BR-4361-01 14 21546604 21546604 G - ARHGEF40 Frame_Shift_Del p.A737Pfs*3 0.40 TCGA-BR-4361-01 14 21549794 21549794 C T ARHGEF40 Missense_Mutation p.R923W 0.34 deleterious(0) probably_damaging(0.994) TCGA-BR-4361-01 14 21961331 21961331 C A TOX4 Missense_Mutation p.P519H 0.10 deleterious(0.01) probably_damaging(0.99) TCGA-BR-4361-01 14 22134094 22134094 C A OR4E2 Silent p.S266S 0.29 TCGA-BR-4361-01 14 22592179 22592179 C T TRAV26-1 Silent p.S88S 0.29 TCGA-BR-4361-01 14 22948543 22948543 A G TRAJ56 Silent p.G12G 0.31 TCGA-BR-4361-01 14 23495175 23495175 A - PSMB5 3'UTR 0.30 TCGA-BR-4361-01 14 23777114 23777114 G A BCL2L2-PABPN1 Missense_Mutation p.M46I 0.35 deleterious_low_confidence(0.01) benign(0.045) TCGA-BR-4361-01 14 23829242 23829242 C T EFS Missense_Mutation p.D149N 0.30 tolerated(0.05) probably_damaging(0.999) TCGA-BR-4361-01 14 24036633 24036633 T C AP1G2 5'UTR 0.18 TCGA-BR-4361-01 14 24531766 24531766 A G LRRC16B Missense_Mutation p.H853R 0.33 deleterious(0.01) benign(0.395) TCGA-BR-4361-01 14 24569353 24569353 G A PCK2 Missense_Mutation p.E389K 0.10 deleterious(0.01) benign(0.046) TCGA-BR-4361-01 14 24587991 24587991 A G DCAF11 Missense_Mutation p.T253A 0.29 tolerated(0.18) benign(0.146) TCGA-BR-4361-01 14 24633834 24633834 C T IRF9 Silent p.L221L 0.04 TCGA-BR-4361-01 14 24675813 24675813 T C TSSK4 Silent p.G108G 0.26 TCGA-BR-4361-01 14 24910013 24910013 T C SDR39U1 Missense_Mutation p.T150A 0.10 tolerated(0.11) benign(0.083) TCGA-BR-4361-01 14 25044010 25044010 T C CTSG Missense_Mutation p.I70M 0.07 tolerated(0.28) possibly_damaging(0.492) TCGA-BR-4361-01 14 25288385 25288385 T C STXBP6 Missense_Mutation p.H156R 0.07 tolerated(0.26) benign(0.007) TCGA-BR-4361-01 14 29237197 29237197 T A FOXG1 Missense_Mutation p.C238S 0.31 deleterious(0.01) probably_damaging(1) TCGA-BR-4361-01 14 31576889 31576891 CTT - HECTD1 In_Frame_Del p.E2167del 0.58 TCGA-BR-4361-01 14 35592436 35592436 C T KIAA0391 5'UTR 0.32 TCGA-BR-4361-01 14 38061905 38061907 GGA - FOXA1 In_Frame_Del p.S28del 0.25 TCGA-BR-4361-01 14 44976167 44976167 A G FSCB Silent p.T8T 0.14 TCGA-BR-4361-01 14 45481238 45481239 - A FAM179B Frame_Shift_Ins p.I1069Nfs*6 0.26 TCGA-BR-4361-01 14 45587241 45587241 G A FKBP3 Missense_Mutation p.P204S 0.29 deleterious(0.01) probably_damaging(0.939) TCGA-BR-4361-01 14 45599093 45599093 A G FKBP3 Silent p.G74G 0.27 TCGA-BR-4361-01 14 45700487 45700487 T C MIS18BP1 Missense_Mutation p.N484S 0.37 deleterious(0.05) benign(0.084) TCGA-BR-4361-01 14 47120671 47120671 C T RPL10L Missense_Mutation p.R90Q 0.39 tolerated(0.11) benign(0.015) TCGA-BR-4361-01 14 50779738 50779738 A C ATP5S 5'UTR 0.13 TCGA-BR-4361-01 14 51219431 51219431 T C NIN Silent p.K1585K 0.09 TCGA-BR-4361-01 14 51224055 51224055 T A NIN Silent p.L1231L 0.28 TCGA-BR-4361-01 14 51347272 51347272 T C ABHD12B Silent p.H146H 0.37 TCGA-BR-4361-01 14 51561624 51561624 C T TRIM9 Missense_Mutation p.V12M 0.22 deleterious(0.04) probably_damaging(0.952) TCGA-BR-4361-01 14 52174925 52174925 G A FRMD6 Missense_Mutation p.A230T 0.29 tolerated(0.1) benign(0.038) TCGA-BR-4361-01 14 52781392 52781392 A G PTGER2 Silent p.A42A 0.23 TCGA-BR-4361-01 14 53020116 53020116 T A GPR137C Missense_Mutation p.L84H 0.45 deleterious(0) benign(0.341) TCGA-BR-4361-01 14 53250196 53250196 A - GNPNAT1 Frame_Shift_Del p.F54Lfs*7 0.26 TCGA-BR-4361-01 14 53417283 53417283 C T FERMT2 Missense_Mutation p.A2T 0.34 deleterious_low_confidence(0.02) probably_damaging(0.98) TCGA-BR-4361-01 14 57271049 57271049 G - OTX2 Frame_Shift_Del p.R44Gfs*15 0.23 TCGA-BR-4361-01 14 57676479 57676479 A T EXOC5 Missense_Mutation p.Y582N 0.25 tolerated(0.08) possibly_damaging(0.84) TCGA-BR-4361-01 14 59113577 59113577 C T DACT1 Nonsense_Mutation p.Q746* 0.24 TCGA-BR-4361-01 14 59791105 59791105 T A DAAM1 Missense_Mutation p.F308I 0.17 deleterious(0) unknown(0) TCGA-BR-4361-01 14 59835393 59835393 G A DAAM1 Missense_Mutation p.R1018H 0.31 deleterious(0) possibly_damaging(0.758) TCGA-BR-4361-01 14 60616897 60616897 A - DHRS7 Frame_Shift_Del p.F214Lfs*14 0.25 TCGA-BR-4361-01 14 60756548 60756548 G A PPM1A Missense_Mutation p.G399D 0.09 tolerated(0.3) benign(0.086) TCGA-BR-4361-01 14 60977805 60977805 C T SIX6 Silent p.L192L 0.29 TCGA-BR-4361-01 14 61519177 61519177 T A SLC38A6 Intron 0.33 TCGA-BR-4361-01 14 61519180 61519180 T A SLC38A6 Intron 0.33 TCGA-BR-4361-01 14 61519182 61519182 T A SLC38A6 Intron 0.30 TCGA-BR-4361-01 14 62014542 62014542 A T RP11-47I22.4 Nonsense_Mutation p.K120* 0.29 TCGA-BR-4361-01 14 63417154 63417155 AC - KCNH5 Frame_Shift_Del p.F356Wfs*13 0.19 TCGA-BR-4361-01 14 64637149 64637149 A G SYNE2 Missense_Mutation p.Y5735C 0.26 benign(0.002) TCGA-BR-4361-01 14 64935100 64935100 G A AKAP5 5'UTR 0.34 TCGA-BR-4361-01 14 65260168 65260170 TTC - SPTB In_Frame_Del p.K737del 0.34 TCGA-BR-4361-01 14 65260187 65260187 C T SPTB Missense_Mutation p.A732T 0.11 tolerated(0.19) possibly_damaging(0.817) TCGA-BR-4361-01 14 68129195 68129195 G A VTI1B Missense_Mutation p.T58M 0.18 tolerated(0.15) benign(0.045) TCGA-BR-4361-01 14 68270908 68270908 G T ZFYVE26 Missense_Mutation p.H449N 0.31 deleterious(0.04) possibly_damaging(0.674) TCGA-BR-4361-01 14 69371427 69371427 C T ACTN1 Silent p.T207T 0.28 TCGA-BR-4361-01 14 69925109 69925109 C T SLC39A9 Silent p.N241N 0.31 TCGA-BR-4361-01 14 70924361 70924361 A G ADAM21 Missense_Mutation p.I49V 0.12 deleterious(0) benign(0.026) TCGA-BR-4361-01 14 70990174 70990174 C T ADAM20 Missense_Mutation p.C484Y 0.07 deleterious(0) probably_damaging(0.999) TCGA-BR-4361-01 14 73420907 73420907 A T DCAF4 Missense_Mutation p.I282F 0.11 deleterious(0) probably_damaging(0.99) TCGA-BR-4361-01 14 74196578 74196578 G T ELMSAN1 Silent p.A620A 0.15 TCGA-BR-4361-01 14 76330197 76330197 C T TTLL5 Missense_Mutation p.R1172W 0.27 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 14 76620992 76620992 C T GPATCH2L Nonsense_Mutation p.R96* 0.31 TCGA-BR-4361-01 14 77580348 77580348 C T CIPC Missense_Mutation p.A296V 0.25 tolerated(0.2) benign(0.009) TCGA-BR-4361-01 14 77808004 77808004 G A TMED8 3'UTR 0.25 TCGA-BR-4361-01 14 77818084 77818084 A T TMED8 Missense_Mutation p.D43E 0.33 tolerated_low_confidence(0.09) benign(0.026) TCGA-BR-4361-01 14 77932002 77932002 A G AHSA1 Missense_Mutation p.T228A 0.26 tolerated(0.74) benign(0.089) TCGA-BR-4361-01 14 77941881 77941881 T C ISM2 3'UTR 0.34 TCGA-BR-4361-01 14 77948915 77948915 C T ISM2 Nonsense_Mutation p.W241* 0.11 TCGA-BR-4361-01 14 79117646 79117646 A G NRXN3 Missense_Mutation p.N27D 0.41 deleterious(0.03) probably_damaging(0.968) TCGA-BR-4361-01 14 88946101 88946101 C T PTPN21 Missense_Mutation p.M558I 0.29 tolerated(0.07) benign(0.005) TCGA-BR-4361-01 14 89124530 89124530 C G EML5 Splice_Site p.X1293_splice 0.27 TCGA-BR-4361-01 14 89163261 89163261 T C EML5 Silent p.T758T 0.11 TCGA-BR-4361-01 14 90754804 90754804 T G NRDE2 Missense_Mutation p.H972P 0.31 deleterious(0) probably_damaging(0.996) TCGA-BR-4361-01 14 91077090 91077090 C T TTC7B Silent p.E654E 0.05 TCGA-BR-4361-01 14 91691156 91691156 C T C14orf159 Silent p.D615D 0.33 TCGA-BR-4361-01 14 91701203 91701203 C T GPR68 Silent p.T64T 0.39 TCGA-BR-4361-01 14 91804474 91804474 G A CCDC88C Missense_Mutation p.R309C 0.35 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 14 91942293 91942293 C T SMEK1 Silent p.Q376Q 0.13 TCGA-BR-4361-01 14 93685689 93685689 T C UBR7 Silent p.C314C 0.32 TCGA-BR-4361-01 14 93760464 93760464 T C BTBD7 Missense_Mutation p.E301G 0.43 deleterious(0) probably_damaging(0.951) TCGA-BR-4361-01 14 95921914 95921914 G A SYNE3 Missense_Mutation p.R313C 0.12 deleterious(0.02) possibly_damaging(0.901) TCGA-BR-4361-01 14 96136820 96136821 - A TCL6 RNA 0.33 TCGA-BR-4361-01 14 96808017 96808017 G A ATG2B Missense_Mutation p.P256S 0.07 tolerated(0.1) possibly_damaging(0.902) TCGA-BR-4361-01 14 99864964 99864964 A G SETD3 3'UTR 0.25 TCGA-BR-4361-01 15 101528908 101528908 T C LRRK1 Missense_Mutation p.V168A 0.23 deleterious(0.01) benign(0.259) TCGA-BR-4361-01 15 101718849 101718849 A G CHSY1 Missense_Mutation p.Y385H 0.11 deleterious(0) probably_damaging(0.98) TCGA-BR-4361-01 15 101816826 101816828 AGA - VIMP In_Frame_Del p.L44del 0.34 TCGA-BR-4361-01 15 20649666 20649666 G A HERC2P3 RNA 0.33 TCGA-BR-4361-01 15 22383083 22383083 G T OR4N4 Missense_Mutation p.G204V 0.23 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 15 23048972 23048972 A G NIPA1 Missense_Mutation p.W283R 0.11 deleterious(0) probably_damaging(0.989) TCGA-BR-4361-01 15 23300064 23300064 C T HERC2P2 RNA 0.32 TCGA-BR-4361-01 15 23330123 23330123 C T HERC2P2 RNA 0.27 TCGA-BR-4361-01 15 24921046 24921046 G A NPAP1 Missense_Mutation p.G11E 0.40 tolerated_low_confidence(1) probably_damaging(0.969) TCGA-BR-4361-01 15 25227367 25227367 T - SNRPN 3'Flank 0.43 TCGA-BR-4361-01 15 25324286 25324286 A G SNORD116-13 RNA 0.25 TCGA-BR-4361-01 15 25327982 25327982 C T SNORD116-16 RNA 0.29 TCGA-BR-4361-01 15 25334977 25334977 G C SNORD116-23 5'Flank 0.41 TCGA-BR-4361-01 15 25490708 25490708 A G SNORD115-40 3'Flank 0.03 TCGA-BR-4361-01 15 28366538 28366538 A G HERC2 Missense_Mutation p.V4409A 0.30 probably_damaging(0.984) TCGA-BR-4361-01 15 28386594 28386594 A G HERC2 Missense_Mutation p.V4000A 0.31 probably_damaging(0.98) TCGA-BR-4361-01 15 28413568 28413568 C T HERC2 Nonsense_Mutation p.W3466* 0.25 TCGA-BR-4361-01 15 28421670 28421671 - G HERC2 Frame_Shift_Ins p.Q3197Pfs*4 0.25 TCGA-BR-4361-01 15 28447491 28447491 A G HERC2 Splice_Site p.X2494_splice 0.09 TCGA-BR-4361-01 15 28511077 28511077 G A HERC2 Nonsense_Mutation p.Q548* 0.22 TCGA-BR-4361-01 15 29560886 29560886 A G NDNL2 3'UTR 0.35 TCGA-BR-4361-01 15 31198007 31198009 GTG - FAN1 In_Frame_Del p.V382del 0.31 TCGA-BR-4361-01 15 33261405 33261405 G A FMN1 Silent p.L610L 0.05 TCGA-BR-4361-01 15 33603275 33603275 A T RYR3 Missense_Mutation p.D10V 0.40 benign(0.008) TCGA-BR-4361-01 15 33954568 33954568 A G RYR3 Missense_Mutation p.I1613V 0.14 benign(0.036) TCGA-BR-4361-01 15 33990089 33990089 A G RYR3 Missense_Mutation p.I2047M 0.22 probably_damaging(0.994) TCGA-BR-4361-01 15 34102718 34102718 G A RYR3 Silent p.R3355R 0.08 TCGA-BR-4361-01 15 34628900 34628900 A - SLC12A6 5'UTR 0.34 TCGA-BR-4361-01 15 35086915 35086915 A G ACTC1 Missense_Mutation p.V32A 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.721) TCGA-BR-4361-01 15 35224524 35224524 A - AQR Frame_Shift_Del p.S299Pfs*23 0.33 TCGA-BR-4361-01 15 38756237 38756237 A G FAM98B Missense_Mutation p.K26E 0.07 tolerated(0.22) benign(0.253) TCGA-BR-4361-01 15 39874866 39874866 C T THBS1 Silent p.D180D 0.33 TCGA-BR-4361-01 15 39877747 39877747 G A THBS1 Missense_Mutation p.C368Y 0.25 deleterious(0) probably_damaging(0.953) TCGA-BR-4361-01 15 40846104 40846104 C T C15orf57 3'Flank 0.36 TCGA-BR-4361-01 15 40915672 40915672 A - CASC5 Frame_Shift_Del p.N1098Mfs*25 0.16 TCGA-BR-4361-01 15 41068826 41068826 C T DNAJC17 Splice_Site p.X99_splice 0.08 TCGA-BR-4361-01 15 41796168 41796168 T C LTK 3'UTR 0.38 TCGA-BR-4361-01 15 41812933 41812933 G A RPAP1 Missense_Mutation p.P1151S 0.31 tolerated(0.28) benign(0.099) TCGA-BR-4361-01 15 41817238 41817238 G A RPAP1 Missense_Mutation p.R676C 0.32 deleterious(0) probably_damaging(0.999) TCGA-BR-4361-01 15 42170739 42170739 C T SPTBN5 Missense_Mutation p.V1091M 0.44 benign(0.21) TCGA-BR-4361-01 15 42360885 42360885 T C PLA2G4D 3'UTR 0.67 TCGA-BR-4361-01 15 42743616 42743616 A G ZNF106 Missense_Mutation p.L262P 0.04 tolerated(0.35) benign(0.002) TCGA-BR-4361-01 15 42840347 42840347 C T LRRC57 Silent p.K60K 0.28 TCGA-BR-4361-01 15 43022951 43022951 G A CDAN1 Silent p.V673V 0.38 TCGA-BR-4361-01 15 43500866 43500866 G A EPB42 Nonsense_Mutation p.Q344* 0.34 TCGA-BR-4361-01 15 43724632 43724632 A G TP53BP1 Silent p.S1145S 0.32 TCGA-BR-4361-01 15 44057709 44057709 T C PDIA3 Missense_Mutation p.Y222H 0.40 tolerated(0.07) benign(0.294) TCGA-BR-4361-01 15 44944092 44944092 G C SPG11 Missense_Mutation p.N351K 0.07 tolerated(0.53) benign(0.006) TCGA-BR-4361-01 15 45404884 45404884 A G DUOX2 Missense_Mutation p.Y65H 0.24 deleterious(0) probably_damaging(0.999) TCGA-BR-4361-01 15 45410280 45410281 - T DUOXA1 Intron 0.26 TCGA-BR-4361-01 15 45564563 45564563 T C SLC28A2 Silent p.C573C 0.46 TCGA-BR-4361-01 15 45898717 45898717 T C BLOC1S6 3'UTR 0.10 TCGA-BR-4361-01 15 48518768 48518768 G T SLC12A1 Intron 0.33 TCGA-BR-4361-01 15 48543836 48543836 A G SLC12A1 Missense_Mutation p.Y604C 0.28 deleterious(0.01) probably_damaging(0.981) TCGA-BR-4361-01 15 48766477 48766477 G A FBN1 Silent p.Y1395Y 0.25 TCGA-BR-4361-01 15 49036443 49036443 T - CEP152 Frame_Shift_Del p.I1277Lfs*20 0.25 TCGA-BR-4361-01 15 50540453 50540453 G C HDC Missense_Mutation p.H377D 0.14 deleterious(0) probably_damaging(0.997) TCGA-BR-4361-01 15 50578203 50578203 A - GABPB1 Intron 0.38 TCGA-BR-4361-01 15 50888464 50888464 A G TRPM7 Missense_Mutation p.I1093T 0.24 deleterious(0) probably_damaging(0.997) TCGA-BR-4361-01 15 50899395 50899395 A G TRPM7 Splice_Site p.X903_splice 0.09 TCGA-BR-4361-01 15 50931740 50931740 C T TRPM7 Missense_Mutation p.A181T 0.24 tolerated(0.44) possibly_damaging(0.827) TCGA-BR-4361-01 15 51207723 51207723 G A AP4E1 Missense_Mutation p.A101T 0.33 deleterious(0) probably_damaging(0.943) TCGA-BR-4361-01 15 51830437 51830437 G A DMXL2 Missense_Mutation p.R440W 0.24 deleterious(0) possibly_damaging(0.765) TCGA-BR-4361-01 15 51856325 51856325 C T DMXL2 Missense_Mutation p.C166Y 0.24 deleterious(0.01) possibly_damaging(0.782) TCGA-BR-4361-01 15 52155049 52155049 G A TMOD3 5'UTR 0.16 TCGA-BR-4361-01 15 52563983 52563983 G A MYO5C Missense_Mutation p.S270L 0.18 deleterious(0.02) benign(0.276) TCGA-BR-4361-01 15 54914556 54914556 A G UNC13C Missense_Mutation p.I2046M 0.09 deleterious_low_confidence(0) possibly_damaging(0.671) TCGA-BR-4361-01 15 56207696 56207696 T C NEDD4 Missense_Mutation p.Q445R 0.29 deleterious_low_confidence(0) benign(0.167) TCGA-BR-4361-01 15 56436621 56436621 C T RFX7 Missense_Mutation p.G86S 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-BR-4361-01 15 56924285 56924285 T - ZNF280D Frame_Shift_Del p.N784Mfs*20 0.25 TCGA-BR-4361-01 15 59373220 59373220 G A RNF111 Silent p.P678P 0.35 TCGA-BR-4361-01 15 63055814 63055814 C T TLN2 Missense_Mutation p.R1672W 0.25 deleterious(0.01) possibly_damaging(0.654) TCGA-BR-4361-01 15 63956768 63956768 T C HERC1 Missense_Mutation p.N2861D 0.10 benign(0.156) TCGA-BR-4361-01 15 64204153 64204153 G C DAPK2 Missense_Mutation p.T329S 0.27 tolerated(1) benign(0.004) TCGA-BR-4361-01 15 64446697 64446697 C A SNX22 Missense_Mutation p.P191Q 0.27 deleterious_low_confidence(0.01) probably_damaging(0.965) TCGA-BR-4361-01 15 65559078 65559078 G A PARP16 Missense_Mutation p.A114V 0.16 tolerated(0.34) benign(0.002) TCGA-BR-4361-01 15 66774157 66774157 C T MAP2K1 Silent p.V211V 0.26 TCGA-BR-4361-01 15 67457298 67457298 T C SMAD3 Missense_Mutation p.L91P 0.32 deleterious(0) possibly_damaging(0.9) TCGA-BR-4361-01 15 70342461 70342461 G T TLE3 Missense_Mutation p.A765D 0.21 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 15 70961720 70961720 A G UACA Missense_Mutation p.S435P 0.06 tolerated(0.27) possibly_damaging(0.582) TCGA-BR-4361-01 15 70980154 70980154 C T UACA Missense_Mutation p.A144T 0.36 deleterious(0) possibly_damaging(0.889) TCGA-BR-4361-01 15 72192132 72192132 T C MYO9A Missense_Mutation p.I1122M 0.42 deleterious(0.02) probably_damaging(0.949) TCGA-BR-4361-01 15 73994824 73994824 G A CD276 Missense_Mutation p.G103D 0.33 deleterious(0) probably_damaging(0.998) TCGA-BR-4361-01 15 73995270 73995270 G A CD276 Silent p.T192T 0.37 TCGA-BR-4361-01 15 74635445 74635445 A G CYP11A1 Missense_Mutation p.L288S 0.27 tolerated(0.05) benign(0.281) TCGA-BR-4361-01 15 74922144 74922144 G A CLK3 Missense_Mutation p.E613K 0.35 deleterious(0.02) benign(0.198) TCGA-BR-4361-01 15 74948135 74948135 G A EDC3 Silent p.S253S 0.26 TCGA-BR-4361-01 15 75047376 75047376 A G CYP1A2 Missense_Mutation p.K500E 0.29 deleterious(0) probably_damaging(0.968) TCGA-BR-4361-01 15 75648756 75648756 G A MAN2C1 Silent p.A941A 0.53 TCGA-BR-4361-01 15 76222269 76222269 T C FBXO22 Missense_Mutation p.Y225H 0.04 deleterious(0) probably_damaging(0.972) TCGA-BR-4361-01 15 77134163 77134163 T C SCAPER Missense_Mutation p.Y102C 0.38 deleterious(0) probably_damaging(0.997) TCGA-BR-4361-01 15 77906403 77906403 T C LINGO1 Missense_Mutation p.N616D 0.30 deleterious(0.01) probably_damaging(0.927) TCGA-BR-4361-01 15 78873306 78873306 T C CHRNA5 Splice_Site p.X86_splice 0.28 TCGA-BR-4361-01 15 78923514 78923514 T C CHRNB4 Missense_Mutation p.Y88C 0.09 deleterious(0.01) probably_damaging(1) TCGA-BR-4361-01 15 79058757 79058757 C T ADAMTS7 Missense_Mutation p.A1166T 0.40 tolerated(0.34) benign(0.01) TCGA-BR-4361-01 15 81282061 81282061 T C MESDC2 Silent p.L24L 0.21 TCGA-BR-4361-01 15 81585324 81585325 AG - IL16 Frame_Shift_Del p.N620Lfs*35 0.10 TCGA-BR-4361-01 15 83933080 83933080 G A BNC1 Missense_Mutation p.P308L 0.25 tolerated(0.32) probably_damaging(0.94) TCGA-BR-4361-01 15 85666327 85666327 A G PDE8A Missense_Mutation p.D663G 0.11 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 15 86278287 86278287 C T AKAP13 Silent p.S2453S 0.33 TCGA-BR-4361-01 15 89758315 89758315 T C RLBP1 Silent p.Q167Q 0.17 TCGA-BR-4361-01 15 89828419 89828419 G A FANCI Silent p.Q597Q 0.10 TCGA-BR-4361-01 15 89870444 89870444 A G POLG Silent p.L463L 0.09 TCGA-BR-4361-01 15 90169244 90169244 C T TICRR Silent p.L1852L 0.26 TCGA-BR-4361-01 15 90190146 90190147 - G KIF7 Frame_Shift_Ins p.L568Pfs*21 0.27 TCGA-BR-4361-01 15 91423207 91423207 G A FURIN Missense_Mutation p.E457K 0.26 tolerated(0.39) benign(0.006) TCGA-BR-4361-01 15 91424194 91424194 C T FURIN Silent p.G572G 0.05 TCGA-BR-4361-01 15 92973323 92973323 T A ST8SIA2 Nonsense_Mutation p.L48* 0.37 TCGA-BR-4361-01 15 99467785 99467785 A G IGF1R Missense_Mutation p.Y885C 0.08 deleterious(0) probably_damaging(0.996) TCGA-BR-4361-01 16 10989150 10989150 T C CIITA Missense_Mutation p.C22R 0.33 tolerated(0.57) benign(0.008) TCGA-BR-4361-01 16 11214490 11214490 C T CLEC16A Missense_Mutation p.A712V 0.29 deleterious(0) possibly_damaging(0.652) TCGA-BR-4361-01 16 11444665 11444665 G A RMI2 3'UTR 0.35 TCGA-BR-4361-01 16 1394107 1394107 A G BAIAP3 Missense_Mutation p.T526A 0.29 tolerated(0.35) benign(0.007) TCGA-BR-4361-01 16 1397758 1397758 G A BAIAP3 Silent p.A1022A 0.11 TCGA-BR-4361-01 16 14026125 14026125 A G ERCC4 Missense_Mutation p.E362G 0.05 deleterious(0.05) benign(0.002) TCGA-BR-4361-01 16 1510448 1510448 C T CLCN7 Missense_Mutation p.V189M 0.24 deleterious(0.01) possibly_damaging(0.482) TCGA-BR-4361-01 16 15224525 15224525 T C RP11-1186N24.5 RNA 0.38 TCGA-BR-4361-01 16 15785075 15785075 G A NDE1 Missense_Mutation p.E200K 0.34 tolerated(0.24) benign(0.005) TCGA-BR-4361-01 16 167321 167321 A - NPRL3 Frame_Shift_Del p.F124Lfs*7 0.25 TCGA-BR-4361-01 16 1825690 1825690 G A EME2 Intron 0.29 TCGA-BR-4361-01 16 18856807 18856807 G A SMG1 Silent p.L2055L 0.33 TCGA-BR-4361-01 16 19590354 19590354 C T C16orf62 Intron 0.38 TCGA-BR-4361-01 16 20491953 20491953 G C ACSM2A Missense_Mutation p.R447P 0.16 deleterious(0) possibly_damaging(0.673) TCGA-BR-4361-01 16 20554526 20554526 C G ACSM2B Missense_Mutation p.R447P 0.14 deleterious(0) probably_damaging(0.929) TCGA-BR-4361-01 16 20807775 20807776 - A ACSM3 Frame_Shift_Ins p.T549Nfs*29 0.25 TCGA-BR-4361-01 16 2086386 2086386 A G SLC9A3R2 Missense_Mutation p.Q159R 0.36 tolerated(0.08) benign(0.021) TCGA-BR-4361-01 16 21123335 21123335 A G DNAH3 Silent p.H633H 0.33 TCGA-BR-4361-01 16 21181777 21181777 C T TMEM159 Missense_Mutation p.S39F 0.06 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 16 21213112 21213112 T C ZP2 Silent p.L473L 0.31 TCGA-BR-4361-01 16 2150541 2150541 G A PKD1 Silent p.L3142L 0.34 TCGA-BR-4361-01 16 2156476 2156476 G A PKD1 Missense_Mutation p.P2471L 0.37 probably_damaging(1) TCGA-BR-4361-01 16 21611071 21611071 G A METTL9 Missense_Mutation p.G6D 0.50 tolerated_low_confidence(0.06) benign(0.103) TCGA-BR-4361-01 16 2161268 2161268 T C PKD1 Silent p.E1300E 0.41 TCGA-BR-4361-01 16 216278 216278 T C HBM Missense_Mutation p.V35A 0.32 tolerated(0.4) benign(0.045) TCGA-BR-4361-01 16 2222242 2222242 G A TRAF7 Missense_Mutation p.A176T 0.24 deleterious(0.04) benign(0.04) TCGA-BR-4361-01 16 22271788 22271788 C T EEF2K Missense_Mutation p.P413S 0.28 tolerated(0.28) possibly_damaging(0.78) TCGA-BR-4361-01 16 2287970 2287970 C T DNASE1L2 Missense_Mutation p.S265L 0.36 deleterious(0.01) probably_damaging(0.993) TCGA-BR-4361-01 16 239820 239820 C T LUC7L Intron 0.29 TCGA-BR-4361-01 16 24580095 24580095 A G RBBP6 Missense_Mutation p.Y695C 0.26 deleterious_low_confidence(0) unknown(0) TCGA-BR-4361-01 16 2507097 2507097 C T CCNF 3'UTR 0.54 TCGA-BR-4361-01 16 25232875 25232875 G - AQP8 Frame_Shift_Del p.M122Cfs*10 0.31 TCGA-BR-4361-01 16 27226316 27226316 A G KDM8 Missense_Mutation p.Y300C 0.06 deleterious(0.01) probably_damaging(0.961) TCGA-BR-4361-01 16 27473658 27473658 T C GTF3C1 Missense_Mutation p.Y2025C 0.38 deleterious(0) possibly_damaging(0.873) TCGA-BR-4361-01 16 27475947 27475947 T C GTF3C1 Missense_Mutation p.S1856G 0.11 tolerated(0.62) benign(0.001) TCGA-BR-4361-01 16 27499707 27499707 C T GTF3C1 Missense_Mutation p.A1181T 0.33 tolerated(0.32) benign(0.017) TCGA-BR-4361-01 16 27629755 27629755 A G KIAA0556 Missense_Mutation p.K25E 0.08 tolerated(0.17) possibly_damaging(0.599) TCGA-BR-4361-01 16 27802591 27802591 G A GSG1L 3'UTR 0.36 TCGA-BR-4361-01 16 28222735 28222735 C T XPO6 5'UTR 0.30 TCGA-BR-4361-01 16 28619888 28619888 T C SULT1A1 Missense_Mutation p.Y62C 0.15 tolerated(0.06) probably_damaging(0.997) TCGA-BR-4361-01 16 28995116 28995116 C T SPNS1 Missense_Mutation p.R444C 0.22 deleterious(0.04) possibly_damaging(0.608) TCGA-BR-4361-01 16 2979777 2979777 G A FLYWCH1 Missense_Mutation p.A31T 0.21 tolerated_low_confidence(0.26) possibly_damaging(0.641) TCGA-BR-4361-01 16 29819116 29819116 A G MAZ Missense_Mutation p.Y337C 0.07 deleterious(0.01) possibly_damaging(0.629) TCGA-BR-4361-01 16 29831021 29831021 C - PAGR1 Frame_Shift_Del p.P239Hfs*24 0.35 TCGA-BR-4361-01 16 29910333 29910333 G A SEZ6L2 Missense_Mutation p.T3I 0.44 deleterious_low_confidence(0) benign(0) TCGA-BR-4361-01 16 29999030 29999030 T C TAOK2 Missense_Mutation p.L1146P 0.13 deleterious_low_confidence(0.01) benign(0.226) TCGA-BR-4361-01 16 30004857 30004857 C T HIRIP3 Missense_Mutation p.C477Y 0.07 deleterious(0) probably_damaging(0.999) TCGA-BR-4361-01 16 30012832 30012832 G A INO80E Missense_Mutation p.R165H 0.26 tolerated(0.05) probably_damaging(0.984) TCGA-BR-4361-01 16 30018259 30018259 G A DOC2A Missense_Mutation p.A242V 0.33 tolerated(0.75) benign(0.001) TCGA-BR-4361-01 16 30096053 30096053 A G PPP4C Missense_Mutation p.Q224R 0.30 tolerated(0.07) benign(0.094) TCGA-BR-4361-01 16 30366122 30366123 AC - CD2BP2 Intron 0.29 TCGA-BR-4361-01 16 3065455 3065456 - C CLDN6 Frame_Shift_Ins p.S190Vfs*24 0.26 TCGA-BR-4361-01 16 30732785 30732785 G A SRCAP Missense_Mutation p.A1177T 0.47 possibly_damaging(0.483) TCGA-BR-4361-01 16 31091576 31091576 G A ZNF646 Missense_Mutation p.A1311T 0.40 deleterious(0.04) probably_damaging(0.996) TCGA-BR-4361-01 16 31122443 31122443 C T BCKDK Missense_Mutation p.P250S 0.28 deleterious(0.03) probably_damaging(0.991) TCGA-BR-4361-01 16 31213142 31213142 G T PYCARD Missense_Mutation p.H118N 0.28 deleterious(0) probably_damaging(0.958) TCGA-BR-4361-01 16 31388516 31388516 C A ITGAX Missense_Mutation p.P907T 0.04 tolerated(0.06) probably_damaging(0.996) TCGA-BR-4361-01 16 3254416 3254416 C - OR1F1 Frame_Shift_Del p.M59Cfs*57 0.12 TCGA-BR-4361-01 16 3433031 3433032 CA - ZSCAN32 Frame_Shift_Del p.C426Wfs*7 0.18 TCGA-BR-4361-01 16 3707217 3707217 G A DNASE1 Silent p.A193A 0.32 TCGA-BR-4361-01 16 3817720 3817721 - T CREBBP Frame_Shift_Ins p.I1084Nfs*3 0.26 TCGA-BR-4361-01 16 3820608 3820608 T C CREBBP Missense_Mutation p.Q948R 0.26 unknown(0) TCGA-BR-4361-01 16 418359 418359 G A MRPL28 Missense_Mutation p.A211V 0.38 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 16 4312644 4312644 G A TFAP4 Missense_Mutation p.R50W 0.37 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 16 4411442 4411442 G A CORO7 Missense_Mutation p.T536M 0.31 deleterious(0.04) probably_damaging(0.922) TCGA-BR-4361-01 16 4431318 4431318 T C VASN Missense_Mutation p.L147P 0.17 deleterious(0) probably_damaging(0.988) TCGA-BR-4361-01 16 46934625 46934625 T G GPT2 Missense_Mutation p.L122R 0.23 deleterious(0.02) benign(0.217) TCGA-BR-4361-01 16 47120148 47120148 T - NETO2 Frame_Shift_Del p.N329Ifs*39 0.10 TCGA-BR-4361-01 16 48173146 48173146 C T ABCC12 Silent p.A253A 0.39 TCGA-BR-4361-01 16 48250029 48250029 A C ABCC11 Missense_Mutation p.L316R 0.31 deleterious(0.01) possibly_damaging(0.905) TCGA-BR-4361-01 16 4895126 4895126 T C GLYR1 Missense_Mutation p.K35R 0.08 tolerated(0.16) benign(0.332) TCGA-BR-4361-01 16 4940785 4940785 G A PPL Silent p.A702A 0.44 TCGA-BR-4361-01 16 50733415 50733415 G A NOD2 Silent p.S30S 0.34 TCGA-BR-4361-01 16 53358048 53358048 A T CHD9 Silent p.A2629A 0.25 TCGA-BR-4361-01 16 53476704 53476704 T - RBL2 Frame_Shift_Del p.Q171Rfs*47 0.20 TCGA-BR-4361-01 16 55562369 55562369 A C LPCAT2 Missense_Mutation p.K131T 0.33 tolerated(0.09) benign(0.039) TCGA-BR-4361-01 16 55705925 55705925 A T SLC6A2 Missense_Mutation p.Y161F 0.30 tolerated(0.18) benign(0.029) TCGA-BR-4361-01 16 56437005 56437005 A G AMFR Missense_Mutation p.M289T 0.12 deleterious(0) benign(0.441) TCGA-BR-4361-01 16 56545131 56545131 A G BBS2 Silent p.I137I 0.12 TCGA-BR-4361-01 16 57416777 57416777 G A CX3CL1 Missense_Mutation p.V343M 0.33 deleterious(0) probably_damaging(0.98) TCGA-BR-4361-01 16 57778313 57778313 C T KATNB1 Missense_Mutation p.T60M 0.31 deleterious(0.04) probably_damaging(0.964) TCGA-BR-4361-01 16 57785608 57785608 C T KATNB1 Missense_Mutation p.A163V 0.30 tolerated(0.05) benign(0.398) TCGA-BR-4361-01 16 58072273 58072273 T C MMP15 Missense_Mutation p.W139R 0.13 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 16 58589340 58589340 A - CNOT1 Frame_Shift_Del p.Q904Sfs*9 0.23 TCGA-BR-4361-01 16 601649 601649 A G CAPN15 Missense_Mutation p.Y777C 0.08 deleterious(0) probably_damaging(0.997) TCGA-BR-4361-01 16 66957424 66957424 A G RRAD Missense_Mutation p.V215A 0.05 tolerated(0.05) benign(0.041) TCGA-BR-4361-01 16 66974153 66974153 T C CES2 Missense_Mutation p.L215P 0.09 deleterious(0) probably_damaging(0.979) TCGA-BR-4361-01 16 67100670 67100670 G A CBFB Missense_Mutation p.G123D 0.21 deleterious(0) probably_damaging(0.999) TCGA-BR-4361-01 16 67229866 67229866 C T E2F4 Silent p.N330N 0.32 TCGA-BR-4361-01 16 67320812 67320812 G A PLEKHG4 Missense_Mutation p.R972H 0.29 tolerated(0.31) benign(0.006) TCGA-BR-4361-01 16 67325658 67325658 G - KCTD19 Frame_Shift_Del p.V768Wfs*38 0.30 TCGA-BR-4361-01 16 67472482 67472482 A G ATP6V0D1 Silent p.C335C 0.08 TCGA-BR-4361-01 16 67576357 67576357 T C FAM65A Silent p.I576I 0.06 TCGA-BR-4361-01 16 67861174 67861174 C A TSNAXIP1 Missense_Mutation p.P509T 0.28 deleterious(0) probably_damaging(0.999) TCGA-BR-4361-01 16 67914024 67914024 A G EDC4 Missense_Mutation p.S668G 0.34 tolerated(0.07) benign(0.004) TCGA-BR-4361-01 16 67942930 67942930 G A PSKH1 Missense_Mutation p.R93H 0.41 deleterious(0) probably_damaging(0.991) TCGA-BR-4361-01 16 67986298 67986298 A - SLC12A4 Frame_Shift_Del p.Y238Tfs*13 0.15 TCGA-BR-4361-01 16 68100478 68100478 A G DUS2 Missense_Mutation p.T165A 0.10 deleterious(0) probably_damaging(0.999) TCGA-BR-4361-01 16 68337993 68337993 G A SLC7A6OS Missense_Mutation p.T205M 0.42 tolerated(0.35) benign(0.018) TCGA-BR-4361-01 16 68835685 68835685 T C CDH1 Silent p.H92H 0.36 TCGA-BR-4361-01 16 69373660 69373660 G T NIP7 5'UTR 0.30 TCGA-BR-4361-01 16 69687169 69687169 A G NFAT5 Silent p.V281V 0.31 TCGA-BR-4361-01 16 69725814 69725814 A G NFAT5 Missense_Mutation p.I696V 0.09 benign(0.064) TCGA-BR-4361-01 16 70292118 70292118 G T AARS Silent p.A665A 0.36 TCGA-BR-4361-01 16 70359507 70359507 G A DDX19B Missense_Mutation p.A175T 0.06 deleterious(0) possibly_damaging(0.814) TCGA-BR-4361-01 16 703790 703790 A G WDR90 Missense_Mutation p.H475R 0.28 tolerated(0.97) benign(0) TCGA-BR-4361-01 16 70422372 70422372 C A ST3GAL2 Missense_Mutation p.S204I 0.28 probably_damaging(0.994) TCGA-BR-4361-01 16 70543282 70543282 C - COG4 Frame_Shift_Del p.R285Pfs*9 0.19 TCGA-BR-4361-01 16 71423861 71423861 C - CALB2 3'UTR 0.33 TCGA-BR-4361-01 16 71487993 71487993 G T ZNF23 5'UTR 0.32 TCGA-BR-4361-01 16 71678722 71678722 G A PHLPP2 3'Flank 0.25 TCGA-BR-4361-01 16 72122889 72122889 T C TXNL4B Missense_Mutation p.Y94C 0.27 deleterious(0.03) probably_damaging(0.994) TCGA-BR-4361-01 16 72829354 72829354 A G ZFHX3 Silent p.L2409L 0.32 TCGA-BR-4361-01 16 72991671 72991671 C - ZFHX3 Frame_Shift_Del p.A792Pfs*32 0.41 TCGA-BR-4361-01 16 7383041 7383041 C T RBFOX1 Silent p.G13G 0.25 TCGA-BR-4361-01 16 739346 739346 C T WDR24 Missense_Mutation p.V99M 0.12 deleterious(0) probably_damaging(0.998) TCGA-BR-4361-01 16 74330861 74330861 C T PSMD7 Missense_Mutation p.L17F 0.09 deleterious(0) probably_damaging(0.999) TCGA-BR-4361-01 16 74753037 74753037 T A FA2H Missense_Mutation p.K212M 0.11 deleterious(0.01) benign(0.396) TCGA-BR-4361-01 16 76481946 76481946 T C CNTNAP4 Silent p.L167L 0.32 TCGA-BR-4361-01 16 76573730 76573730 A C CNTNAP4 Missense_Mutation p.E1039A 0.22 tolerated(0.59) benign(0.026) TCGA-BR-4361-01 16 79632969 79632969 C T MAF Silent p.Q277Q 0.20 TCGA-BR-4361-01 16 79633642 79633642 C T MAF Missense_Mutation p.G53D 0.38 tolerated(0.18) unknown(0) TCGA-BR-4361-01 16 81078385 81078385 A G ATMIN Missense_Mutation p.N761S 0.05 tolerated(0.28) benign(0.05) TCGA-BR-4361-01 16 81190510 81190510 A G PKD1L2 RNA 0.32 TCGA-BR-4361-01 16 81209311 81209311 A G PKD1L2 Missense_Mutation p.Y84H 0.25 deleterious(0.02) probably_damaging(0.992) TCGA-BR-4361-01 16 81293316 81293316 G A BCMO1 Missense_Mutation p.D77N 0.34 deleterious(0.04) possibly_damaging(0.537) TCGA-BR-4361-01 16 84218572 84218572 C T TAF1C Missense_Mutation p.R8H 0.24 tolerated(0.5) benign(0.009) TCGA-BR-4361-01 16 84224941 84224941 A G ADAD2 Silent p.L35L 0.20 TCGA-BR-4361-01 16 843186 843186 G A CHTF18 Missense_Mutation p.V572M 0.55 deleterious(0.01) probably_damaging(0.966) TCGA-BR-4361-01 16 847005 847005 T C CHTF18 Silent p.I882I 0.08 TCGA-BR-4361-01 16 84778357 84778357 T C USP10 Silent p.F90F 0.20 TCGA-BR-4361-01 16 85696670 85696670 C T GSE1 Missense_Mutation p.P782S 0.45 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 16 85701751 85701751 G A GSE1 Missense_Mutation p.V1046M 0.30 tolerated(0.13) benign(0.134) TCGA-BR-4361-01 16 86612389 86612389 G A FOXL1 Silent p.L20L 0.39 TCGA-BR-4361-01 16 87723329 87723329 C T JPH3 Nonsense_Mutation p.Q455* 0.24 TCGA-BR-4361-01 16 88066729 88066729 A G BANP Missense_Mutation p.T352A 0.11 tolerated_low_confidence(0.61) benign(0.001) TCGA-BR-4361-01 16 8889681 8889681 A G TMEM186 3'UTR 0.33 TCGA-BR-4361-01 16 89167401 89167401 C T ACSF3 Silent p.N104N 0.13 TCGA-BR-4361-01 16 89809286 89809286 T C FANCA Silent p.A1229A 0.39 TCGA-BR-4361-01 16 90038141 90038141 T - CENPBD1 Frame_Shift_Del p.I64Sfs*7 0.33 TCGA-BR-4361-01 16 9857380 9857380 T - GRIN2A Frame_Shift_Del p.S1341Afs*56 0.40 TCGA-BR-4361-01 17 10366715 10366715 T C MYH4 Missense_Mutation p.K249E 0.11 deleterious(0) probably_damaging(0.991) TCGA-BR-4361-01 17 11656204 11656204 A G DNAH9 Missense_Mutation p.K2222R 0.19 possibly_damaging(0.874) TCGA-BR-4361-01 17 12909071 12909071 T C ELAC2 Missense_Mutation p.E290G 0.29 deleterious(0.04) possibly_damaging(0.603) TCGA-BR-4361-01 17 1386228 1386228 G A MYO1C Missense_Mutation p.A158V 0.29 deleterious(0) possibly_damaging(0.874) TCGA-BR-4361-01 17 15620639 15620639 T C ZNF286A 3'UTR 0.36 TCGA-BR-4361-01 17 16338211 16338211 G A TRPV2 Missense_Mutation p.E708K 0.28 deleterious(0) probably_damaging(0.998) TCGA-BR-4361-01 17 16455634 16455634 T C ZNF287 Missense_Mutation p.T608A 0.13 tolerated(0.07) probably_damaging(0.934) TCGA-BR-4361-01 17 1650779 1650779 C T SERPINF2 Missense_Mutation p.L230F 0.28 deleterious(0.01) probably_damaging(0.996) TCGA-BR-4361-01 17 1684473 1684473 C A SMYD4 3'UTR 0.42 TCGA-BR-4361-01 17 17698099 17698099 G T RAI1 Missense_Mutation p.G613W 0.34 tolerated(0.18) probably_damaging(0.957) TCGA-BR-4361-01 17 17700169 17700169 A T RAI1 Nonsense_Mutation p.K1303* 0.08 TCGA-BR-4361-01 17 17700292 17700292 T A RAI1 Missense_Mutation p.F1344I 0.09 deleterious(0.03) benign(0.092) TCGA-BR-4361-01 17 18566528 18566529 - A ZNF286B Frame_Shift_Ins p.L97Ffs*21 0.23 TCGA-BR-4361-01 17 19186549 19186549 G A EPN2 Silent p.L39L 0.31 TCGA-BR-4361-01 17 19284780 19284780 C T MAPK7 Missense_Mutation p.P420S 0.33 deleterious_low_confidence(0.01) unknown(0) TCGA-BR-4361-01 17 19555013 19555013 G T ALDH3A2 Nonsense_Mutation p.G103* 0.31 TCGA-BR-4361-01 17 20799282 20799282 G C CCDC144NL Missense_Mutation p.P18A 0.21 deleterious_low_confidence(0.02) probably_damaging(0.981) TCGA-BR-4361-01 17 20921306 20921306 C T USP22 Missense_Mutation p.M213I 0.08 tolerated(0.31) benign(0.063) TCGA-BR-4361-01 17 2282855 2282855 C T SGSM2 3'UTR 0.44 TCGA-BR-4361-01 17 2324091 2324091 G C METTL16 Silent p.R332R 0.34 TCGA-BR-4361-01 17 25919448 25919448 C T KSR1 Silent p.L261L 0.27 TCGA-BR-4361-01 17 2595724 2595724 C T CLUH Missense_Mutation p.R1125H 0.27 deleterious(0.01) probably_damaging(0.973) TCGA-BR-4361-01 17 2606624 2606624 G A CLUH Missense_Mutation p.R117C 0.14 deleterious(0) possibly_damaging(0.776) TCGA-BR-4361-01 17 26449739 26449740 - T NLK Frame_Shift_Ins p.K193* 0.11 TCGA-BR-4361-01 17 26960389 26960389 A C KIAA0100 Missense_Mutation p.W1166G 0.33 deleterious(0) possibly_damaging(0.811) TCGA-BR-4361-01 17 26964956 26964956 C T KIAA0100 Missense_Mutation p.A557T 0.10 tolerated(0.52) benign(0.004) TCGA-BR-4361-01 17 27185617 27185617 A G ERAL1 Silent p.S245S 0.05 TCGA-BR-4361-01 17 27380576 27380576 A G PIPOX Missense_Mutation p.Q208R 0.07 tolerated(0.43) benign(0.005) TCGA-BR-4361-01 17 27420384 27420384 T G MYO18A Missense_Mutation p.E1628A 0.52 deleterious(0.01) benign(0.34) TCGA-BR-4361-01 17 27437032 27437032 G A MYO18A Missense_Mutation p.R1059C 0.38 deleterious(0.02) possibly_damaging(0.849) TCGA-BR-4361-01 17 27447649 27447649 G A MYO18A Silent p.A571A 0.32 TCGA-BR-4361-01 17 28530221 28530221 C T SLC6A4 Missense_Mutation p.R596Q 0.05 tolerated(0.09) possibly_damaging(0.605) TCGA-BR-4361-01 17 29587399 29587399 T A NF1 Missense_Mutation p.D1481E 0.33 tolerated(0.4) probably_damaging(0.97) TCGA-BR-4361-01 17 30202317 30202317 A G UTP6 Missense_Mutation p.I414T 0.06 tolerated(0.13) benign(0.185) TCGA-BR-4361-01 17 31618577 31618577 C T ASIC2 Missense_Mutation p.R186H 0.25 tolerated(0.22) benign(0.228) TCGA-BR-4361-01 17 32953916 32953916 C - TMEM132E Frame_Shift_Del p.R192Gfs*13 0.36 TCGA-BR-4361-01 17 33266705 33266705 G A CCT6B Silent p.A332A 0.27 TCGA-BR-4361-01 17 33289765 33289765 A G ZNF830 3'UTR 0.29 TCGA-BR-4361-01 17 33747357 33747357 C T SLFN12 Silent p.T361T 0.32 TCGA-BR-4361-01 17 33770933 33770933 G T SLFN13 Missense_Mutation p.P358H 0.30 tolerated(0.11) benign(0.271) TCGA-BR-4361-01 17 33998825 33998825 C A AP2B1 Missense_Mutation p.P695H 0.29 deleterious(0.01) possibly_damaging(0.642) TCGA-BR-4361-01 17 34062412 34062412 C T RASL10B Missense_Mutation p.T70M 0.25 deleterious(0) possibly_damaging(0.839) TCGA-BR-4361-01 17 34072896 34072896 G T GAS2L2 Silent p.A540A 0.19 TCGA-BR-4361-01 17 34862384 34862384 G A MYO19 Silent p.L570L 0.35 TCGA-BR-4361-01 17 35300172 35300172 C T LHX1 Missense_Mutation p.T322M 0.29 deleterious(0.04) benign(0.085) TCGA-BR-4361-01 17 35300261 35300261 G A LHX1 Missense_Mutation p.G352R 0.33 deleterious(0.01) possibly_damaging(0.654) TCGA-BR-4361-01 17 35627644 35627644 G C ACACA Missense_Mutation p.Q373E 0.05 deleterious(0.01) probably_damaging(0.939) TCGA-BR-4361-01 17 35830566 35830566 C T TADA2A Missense_Mutation p.L320F 0.08 deleterious(0.02) benign(0.08) TCGA-BR-4361-01 17 3594321 3594321 C T P2RX5 Missense_Mutation p.G97R 0.19 deleterious(0) probably_damaging(0.997) TCGA-BR-4361-01 17 35993318 35993319 - T DDX52 Frame_Shift_Ins p.I140Dfs*7 0.08 TCGA-BR-4361-01 17 3618119 3618119 C A ITGAE 3'UTR 0.35 TCGA-BR-4361-01 17 36485249 36485249 A G GPR179 Silent p.D1401D 0.07 TCGA-BR-4361-01 17 36971185 36971185 A G CWC25 Silent p.F119F 0.28 TCGA-BR-4361-01 17 37101363 37101363 T C FBXO47 Missense_Mutation p.I215V 0.38 tolerated(0.43) benign(0.003) TCGA-BR-4361-01 17 37187149 37187149 T C CTD-2206N4.2 5'Flank 0.46 TCGA-BR-4361-01 17 3721814 3721814 C T C17orf85 Silent p.E351E 0.05 TCGA-BR-4361-01 17 37333585 37333585 C T CACNB1 Intron 0.21 TCGA-BR-4361-01 17 37564724 37564724 T A MED1 Silent p.G1250G 0.25 TCGA-BR-4361-01 17 3776731 3776731 A G CAMKK1 Missense_Mutation p.V379A 0.06 tolerated(0.07) possibly_damaging(0.61) TCGA-BR-4361-01 17 37829804 37829804 G A PGAP3 Silent p.F219F 0.33 TCGA-BR-4361-01 17 38191547 38191547 G T MED24 Missense_Mutation p.L128I 0.50 tolerated(0.09) possibly_damaging(0.818) TCGA-BR-4361-01 17 38638399 38638399 G A TNS4 Missense_Mutation p.L552F 0.67 deleterious(0) probably_damaging(0.999) TCGA-BR-4361-01 17 39394370 39394370 A G KRTAP9-8 Missense_Mutation p.T23A 0.47 deleterious(0.02) unknown(0) TCGA-BR-4361-01 17 39643624 39643624 C T KRT36 Silent p.E322E 0.33 TCGA-BR-4361-01 17 39661316 39661316 G A KRT13 Missense_Mutation p.R163W 0.45 deleterious(0) probably_damaging(0.992) TCGA-BR-4361-01 17 39767667 39767667 C T KRT16 Missense_Mutation p.R234K 0.60 tolerated(0.37) possibly_damaging(0.585) TCGA-BR-4361-01 17 40068710 40068710 T C ACLY Missense_Mutation p.K82R 0.07 tolerated(0.26) benign(0.001) TCGA-BR-4361-01 17 40146885 40146885 T C DNAJC7 Intron 0.09 TCGA-BR-4361-01 17 40557220 40557220 G A PTRF Missense_Mutation p.R220C 0.27 deleterious(0) probably_damaging(0.988) TCGA-BR-4361-01 17 4080582 4080582 G A ANKFY1 Missense_Mutation p.R914W 0.34 deleterious(0.01) probably_damaging(0.983) TCGA-BR-4361-01 17 40940731 40940731 C T WNK4 Silent p.C691C 0.30 TCGA-BR-4361-01 17 40948836 40948837 - G WNK4 3'UTR 0.25 TCGA-BR-4361-01 17 40989706 40989706 C T PSME3 Missense_Mutation p.A95V 0.26 tolerated(0.29) benign(0.001) TCGA-BR-4361-01 17 41143833 41143833 T - RUNDC1 3'UTR 0.26 TCGA-BR-4361-01 17 41832758 41832758 G A SOST Silent p.R198R 0.34 TCGA-BR-4361-01 17 41846893 41846893 T C DUSP3 3'UTR 0.35 TCGA-BR-4361-01 17 42290225 42290225 T C UBTF Missense_Mutation p.T208A 0.27 tolerated(0.19) benign(0.071) TCGA-BR-4361-01 17 42427679 42427679 G T GRN Missense_Mutation p.G145C 0.27 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 17 43006220 43006220 C - KIF18B Frame_Shift_Del p.A564Hfs*29 0.32 TCGA-BR-4361-01 17 43037611 43037611 C T C1QL1 Missense_Mutation p.G241D 0.35 deleterious(0.03) probably_damaging(0.999) TCGA-BR-4361-01 17 43220923 43220923 G A ACBD4 Missense_Mutation p.G314E 0.07 tolerated_low_confidence(0.25) benign(0.006) TCGA-BR-4361-01 17 43531503 43531503 G A PLEKHM1 Missense_Mutation p.T572I 0.42 tolerated(0.46) benign(0.007) TCGA-BR-4361-01 17 4391193 4391193 C T SPNS3 3'UTR 0.07 TCGA-BR-4361-01 17 44060714 44060714 C T MAPT Missense_Mutation p.R182C 0.21 tolerated(0.14) benign(0.001) TCGA-BR-4361-01 17 4448930 4448930 G A MYBBP1A Missense_Mutation p.P683L 0.31 tolerated(0.17) benign(0.03) TCGA-BR-4361-01 17 4461470 4461471 - T GGT6 Frame_Shift_Ins p.R441Kfs*115 0.20 TCGA-BR-4361-01 17 45018101 45018101 A G GOSR2 3'UTR 0.47 TCGA-BR-4361-01 17 45822603 45822603 C T TBX21 Silent p.G493G 0.24 TCGA-BR-4361-01 17 4638556 4638556 A G CXCL16 Silent p.P202P 0.37 TCGA-BR-4361-01 17 4638666 4638666 A G CXCL16 Missense_Mutation p.S166P 0.28 tolerated(0.17) benign(0.001) TCGA-BR-4361-01 17 46805653 46805653 G T HOXB13 Silent p.A101A 0.30 TCGA-BR-4361-01 17 4712400 4712400 C T PLD2 Missense_Mutation p.A130V 0.24 tolerated(0.31) possibly_damaging(0.485) TCGA-BR-4361-01 17 47589350 47589350 C T NGFR Silent p.G306G 0.12 TCGA-BR-4361-01 17 4800595 4800595 C T MINK1 3'UTR 0.31 TCGA-BR-4361-01 17 4802167 4802167 C T CHRNE Missense_Mutation p.R449H 0.30 tolerated(0.39) possibly_damaging(0.756) TCGA-BR-4361-01 17 48145586 48145586 C T ITGA3 Missense_Mutation p.T194M 0.32 deleterious(0.02) probably_damaging(0.924) TCGA-BR-4361-01 17 48433967 48433967 C - XYLT2 Frame_Shift_Del p.G529Afs*78 0.32 TCGA-BR-4361-01 17 48434595 48434595 C T XYLT2 Silent p.S641S 0.12 TCGA-BR-4361-01 17 48453452 48453452 C T EME1 Silent p.G267G 0.38 TCGA-BR-4361-01 17 48703770 48703770 G A CACNA1G Silent p.E2264E 0.24 TCGA-BR-4361-01 17 5037186 5037186 T C USP6 Missense_Mutation p.M130T 0.08 deleterious_low_confidence(0.03) benign(0.149) TCGA-BR-4361-01 17 5049390 5049391 - A USP6 Frame_Shift_Ins p.Q750Tfs*9 0.31 TCGA-BR-4361-01 17 53398143 53398143 A G HLF Missense_Mutation p.N264S 0.22 deleterious(0) probably_damaging(0.998) TCGA-BR-4361-01 17 53491524 53491524 A G MMD Silent p.C32C 0.35 TCGA-BR-4361-01 17 55079432 55079432 C A SCPEP1 Missense_Mutation p.Q396K 0.25 tolerated(0.66) benign(0.004) TCGA-BR-4361-01 17 56326949 56326949 G A LPO Missense_Mutation p.A156T 0.31 deleterious(0.02) possibly_damaging(0.642) TCGA-BR-4361-01 17 58313509 58313509 T C USP32 Missense_Mutation p.Y410C 0.10 deleterious(0) probably_damaging(0.998) TCGA-BR-4361-01 17 59560871 59560871 C T TBX4 Silent p.D544D 0.27 TCGA-BR-4361-01 17 59968953 59968953 G A INTS2 Missense_Mutation p.A607V 0.33 tolerated(0.29) possibly_damaging(0.851) TCGA-BR-4361-01 17 60030383 60030383 A G MED13 Silent p.T2020T 0.12 TCGA-BR-4361-01 17 60043998 60043998 A G MED13 Silent p.G1402G 0.35 TCGA-BR-4361-01 17 60072701 60072701 A G MED13 Silent p.L665L 0.08 TCGA-BR-4361-01 17 61466882 61466882 C G TANC2 Missense_Mutation p.L936V 0.17 deleterious(0.04) benign(0.309) TCGA-BR-4361-01 17 61995762 61995762 C T GH1 Missense_Mutation p.A39T 0.08 deleterious(0.04) possibly_damaging(0.731) TCGA-BR-4361-01 17 62018681 62018681 G A SCN4A Missense_Mutation p.A1654V 0.07 deleterious(0.02) benign(0.156) TCGA-BR-4361-01 17 62758775 62758775 T C hsa-mir-6080 RNA 0.18 TCGA-BR-4361-01 17 6387608 6387608 T C PITPNM3 Silent p.E93E 0.27 TCGA-BR-4361-01 17 65942395 65942395 A G BPTF Missense_Mutation p.E2524G 0.06 probably_damaging(0.986) TCGA-BR-4361-01 17 67287435 67287435 T C ABCA5 Missense_Mutation p.T510A 0.16 deleterious(0) probably_damaging(0.998) TCGA-BR-4361-01 17 70118922 70118922 A G SOX9 Missense_Mutation p.H165R 0.50 deleterious(0) possibly_damaging(0.673) TCGA-BR-4361-01 17 71196745 71196745 A G COG1 Missense_Mutation p.M371V 0.40 tolerated(1) benign(0) TCGA-BR-4361-01 17 7139443 7139443 C - PHF23 Frame_Shift_Del p.G268Vfs*63 0.42 TCGA-BR-4361-01 17 7189239 7189239 C T SLC2A4 Intron 0.27 TCGA-BR-4361-01 17 7214674 7214674 T C EIF5A Silent p.I122I 0.27 TCGA-BR-4361-01 17 72278019 72278019 G A DNAI2 Silent p.S21S 0.32 TCGA-BR-4361-01 17 72301516 72301516 G A DNAI2 Silent p.T382T 0.29 TCGA-BR-4361-01 17 7256323 7256323 G A KCTD11 Missense_Mutation p.G21D 0.27 tolerated(0.9) benign(0.006) TCGA-BR-4361-01 17 72838813 72838813 C T GRIN2C Missense_Mutation p.A1155T 0.44 tolerated_low_confidence(0.46) benign(0.002) TCGA-BR-4361-01 17 7297518 7297518 C G TMEM256-PLSCR3 5'UTR 0.46 TCGA-BR-4361-01 17 7318418 7318418 C T NLGN2 Missense_Mutation p.R330C 0.27 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 17 73467975 73467975 T C KIAA0195 5'UTR 0.37 TCGA-BR-4361-01 17 73491063 73491063 C - KIAA0195 Frame_Shift_Del p.S895Pfs*13 0.42 TCGA-BR-4361-01 17 73565397 73565397 G T LLGL2 Silent p.T524T 0.32 TCGA-BR-4361-01 17 73625122 73625122 A G RECQL5 Missense_Mutation p.V794A 0.32 tolerated(0.36) benign(0.003) TCGA-BR-4361-01 17 7365936 7365936 C T ZBTB4 Missense_Mutation p.A789T 0.10 benign(0.021) TCGA-BR-4361-01 17 73759466 73759466 C - GALK1 Frame_Shift_Del p.G137Vfs*27 0.40 TCGA-BR-4361-01 17 73780852 73780852 G - UNK 5'UTR 0.24 TCGA-BR-4361-01 17 7385573 7385573 T C SLC35G6 Silent p.R90R 0.22 TCGA-BR-4361-01 17 73910955 73910955 C T FBF1 Missense_Mutation p.R881H 0.27 deleterious(0.02) probably_damaging(0.927) TCGA-BR-4361-01 17 74077595 74077595 G A EXOC7 3'Flank 0.06 TCGA-BR-4361-01 17 74527136 74527136 C T CYGB Missense_Mutation p.R155H 0.36 tolerated(0.21) benign(0.169) TCGA-BR-4361-01 17 74865037 74865037 G A MGAT5B 5'Flank 0.47 TCGA-BR-4361-01 17 75202391 75202391 T A SEC14L1 Missense_Mutation p.I417N 0.33 deleterious(0) probably_damaging(0.917) TCGA-BR-4361-01 17 75202481 75202481 T C SEC14L1 Missense_Mutation p.L447P 0.27 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 17 75209393 75209393 T C SEC14L1 Intron 0.41 TCGA-BR-4361-01 17 75493432 75493432 C T SEPT9 Missense_Mutation p.R537W 0.36 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 17 7559266 7559266 T C ATP1B2 3'UTR 0.15 TCGA-BR-4361-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.24 tolerated(0.13) possibly_damaging(0.631) TCGA-BR-4361-01 17 7578427 7578427 T C TP53 Missense_Mutation p.H168R 0.26 deleterious(0) possibly_damaging(0.733) TCGA-BR-4361-01 17 76696475 76696475 C T CYTH1 Missense_Mutation p.R163Q 0.16 deleterious(0.03) probably_damaging(0.991) TCGA-BR-4361-01 17 76705763 76705763 C T CYTH1 Missense_Mutation p.R25Q 0.28 tolerated(0.39) benign(0.044) TCGA-BR-4361-01 17 78055787 78055787 T C CCDC40 Missense_Mutation p.M640T 0.30 tolerated(0.1) benign(0.004) TCGA-BR-4361-01 17 78172264 78172264 G - CARD14 Frame_Shift_Del p.D577Mfs*40 0.29 TCGA-BR-4361-01 17 78222037 78222037 C T SLC26A11 Missense_Mutation p.A468V 0.33 tolerated(1) benign(0) TCGA-BR-4361-01 17 78317675 78317675 G C RNF213 Missense_Mutation p.V2068L 0.13 benign(0.071) TCGA-BR-4361-01 17 78346449 78346449 G A RNF213 Silent p.S4222S 0.46 TCGA-BR-4361-01 17 78360232 78360232 T C RNF213 Splice_Site p.X4907_splice 0.22 TCGA-BR-4361-01 17 79612317 79612317 G - TSPAN10 Frame_Shift_Del p.L116Cfs*19 0.15 TCGA-BR-4361-01 17 79632587 79632587 A G OXLD1 Missense_Mutation p.C30R 0.12 tolerated(0.53) benign(0.002) TCGA-BR-4361-01 17 7975971 7975971 T - ALOX12B 3'UTR 0.15 TCGA-BR-4361-01 17 79826687 79826687 G - ARHGDIA 3'UTR 0.33 TCGA-BR-4361-01 17 7990887 7990887 A G ALOX12B 5'UTR 0.43 TCGA-BR-4361-01 17 80049217 80049217 G A FASN Missense_Mutation p.A458V 0.29 tolerated(0.11) benign(0.369) TCGA-BR-4361-01 17 80059697 80059697 T C FASN 5'Flank 0.27 TCGA-BR-4361-01 17 8013711 8013711 C T ALOXE3 Missense_Mutation p.A497T 0.33 deleterious(0) probably_damaging(0.948) TCGA-BR-4361-01 17 80615771 80615771 T G RAB40B Missense_Mutation p.N269H 0.28 tolerated_low_confidence(0.07) benign(0.002) TCGA-BR-4361-01 17 8108325 8108325 G A AURKB Missense_Mutation p.A300V 0.25 deleterious(0.02) possibly_damaging(0.885) TCGA-BR-4361-01 17 8138088 8138088 T C CTC1 Silent p.P532P 0.33 TCGA-BR-4361-01 17 8926216 8926216 T C NTN1 Missense_Mutation p.F176L 0.11 deleterious(0.02) benign(0.02) TCGA-BR-4361-01 17 9489252 9489252 A G WDR16 Missense_Mutation p.Y78C 0.07 deleterious(0) probably_damaging(0.987) TCGA-BR-4361-01 17 9801318 9801318 C T RCVRN 3'UTR 0.60 TCGA-BR-4361-01 18 11752365 11752365 C T GNAL Intron 0.09 TCGA-BR-4361-01 18 12449597 12449597 C T SPIRE1 3'UTR 0.41 TCGA-BR-4361-01 18 13387564 13387564 G C LDLRAD4 5'UTR 0.36 TCGA-BR-4361-01 18 13612766 13612766 A - LDLRAD4 Intron 0.27 TCGA-BR-4361-01 18 13884985 13884985 A G MC2R Missense_Mutation p.F178S 0.30 deleterious(0.02) probably_damaging(0.999) TCGA-BR-4361-01 18 18588031 18588031 A G ROCK1 Missense_Mutation p.V512A 0.22 tolerated(0.37) benign(0.012) TCGA-BR-4361-01 18 21441613 21441613 G C LAMA3 Missense_Mutation p.V1476L 0.07 benign(0.219) TCGA-BR-4361-01 18 216529 216529 T C THOC1 Missense_Mutation p.E520G 0.34 deleterious(0.03) benign(0.037) TCGA-BR-4361-01 18 21660762 21660762 T - TTC39C Frame_Shift_Del p.H227Tfs*31 0.31 TCGA-BR-4361-01 18 22805224 22805224 G A ZNF521 Silent p.Y886Y 0.32 TCGA-BR-4361-01 18 23866258 23866258 T C TAF4B Missense_Mutation p.V462A 0.32 tolerated(0.64) possibly_damaging(0.591) TCGA-BR-4361-01 18 29044269 29044269 A - DSG3 Frame_Shift_Del p.K400Nfs*36 0.28 TCGA-BR-4361-01 18 2913316 2913316 G - EMILIN2 Frame_Shift_Del p.G1027Afs*38 0.24 TCGA-BR-4361-01 18 2920395 2920395 G - LPIN2 Frame_Shift_Del p.L863Ffs*136 0.18 TCGA-BR-4361-01 18 2920878 2920878 T C LPIN2 Missense_Mutation p.D815G 0.35 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 18 29340013 29340013 T C SLC25A52 Silent p.A214A 0.10 TCGA-BR-4361-01 18 29429584 29429584 A G TRAPPC8 Missense_Mutation p.V1227A 0.21 tolerated(0.32) benign(0.005) TCGA-BR-4361-01 18 2946531 2946531 C T LPIN2 Intron 0.45 TCGA-BR-4361-01 18 30260415 30260415 C T KLHL14 Silent p.A462A 0.26 TCGA-BR-4361-01 18 30349862 30349862 G - KLHL14 Frame_Shift_Del p.V232Wfs*30 0.51 TCGA-BR-4361-01 18 33836952 33836952 C T MOCOS Missense_Mutation p.A729V 0.05 tolerated(0.18) benign(0.033) TCGA-BR-4361-01 18 33848583 33848583 T C MOCOS Silent p.L868L 0.11 TCGA-BR-4361-01 18 34205516 34205516 C - FHOD3 Frame_Shift_Del p.S336Vfs*138 0.31 TCGA-BR-4361-01 18 34753044 34753044 G A KIAA1328 Missense_Mutation p.R508Q 0.21 deleterious(0.04) benign(0.213) TCGA-BR-4361-01 18 34854302 34854302 A G CELF4 Missense_Mutation p.F258S 0.08 deleterious(0.02) probably_damaging(0.993) TCGA-BR-4361-01 18 46385820 46385820 A G CTIF Missense_Mutation p.T565A 0.28 tolerated(0.1) benign(0.115) TCGA-BR-4361-01 18 50985668 50985668 T C DCC Silent p.L1153L 0.12 TCGA-BR-4361-01 18 50985691 50985691 A G DCC Missense_Mutation p.E1161G 0.11 deleterious(0) probably_damaging(0.968) TCGA-BR-4361-01 18 51025784 51025784 A G DCC Missense_Mutation p.T1339A 0.07 tolerated(0.33) benign(0.145) TCGA-BR-4361-01 18 54358512 54358512 C G WDR7 Silent p.T261T 0.24 TCGA-BR-4361-01 18 55103632 55103632 C T ONECUT2 Silent p.A228A 0.50 TCGA-BR-4361-01 18 55322536 55322536 G A ATP8B1 Nonsense_Mutation p.R941* 0.30 TCGA-BR-4361-01 18 55335781 55335781 T C ATP8B1 Intron 0.34 TCGA-BR-4361-01 18 55355665 55355665 G A ATP8B1 Missense_Mutation p.T432I 0.30 tolerated(0.16) benign(0.049) TCGA-BR-4361-01 18 55990515 55990515 A - NEDD4L Frame_Shift_Del p.N156Mfs*51 0.37 TCGA-BR-4361-01 18 56651514 56651514 G T ZNF532 Missense_Mutation p.G1241V 0.29 deleterious(0.03) possibly_damaging(0.501) TCGA-BR-4361-01 18 56939715 56939715 T C RAX Missense_Mutation p.T141A 0.25 deleterious(0) probably_damaging(0.999) TCGA-BR-4361-01 18 56998753 56998753 T C LMAN1 Missense_Mutation p.K465E 0.31 tolerated(0.18) benign(0.06) TCGA-BR-4361-01 18 58038674 58038674 T C MC4R Silent p.A303A 0.05 TCGA-BR-4361-01 18 60017167 60017167 A G TNFRSF11A Missense_Mutation p.T94A 0.04 tolerated(0.82) benign(0.01) TCGA-BR-4361-01 18 60630645 60630645 C T PHLPP1 Missense_Mutation p.A1167V 0.39 tolerated(0.11) possibly_damaging(0.496) TCGA-BR-4361-01 18 60985517 60985517 C T BCL2 Missense_Mutation p.G128E 0.07 tolerated(0.42) possibly_damaging(0.463) TCGA-BR-4361-01 18 61067315 61067315 A G VPS4B Silent p.R252R 0.33 TCGA-BR-4361-01 18 61166407 61166407 A T SERPINB5 Missense_Mutation p.N208Y 0.37 tolerated(1) benign(0.001) TCGA-BR-4361-01 18 61306899 61306899 T C SERPINB4 Missense_Mutation p.N194S 0.11 tolerated(0.11) benign(0.01) TCGA-BR-4361-01 18 61471659 61471659 T C SERPINB7 Silent p.A311A 0.13 TCGA-BR-4361-01 18 6239801 6239801 A G L3MBTL4 Missense_Mutation p.L208S 0.09 deleterious(0.02) benign(0.268) TCGA-BR-4361-01 18 627251 627251 C A CLUL1 Missense_Mutation p.S193Y 0.32 tolerated(0.43) possibly_damaging(0.559) TCGA-BR-4361-01 18 6873731 6873731 G A ARHGAP28 Missense_Mutation p.R231Q 0.33 tolerated(1) benign(0.036) TCGA-BR-4361-01 18 70502382 70502382 A G NETO1 Intron 0.36 TCGA-BR-4361-01 18 70534507 70534507 A G NETO1 Missense_Mutation p.V7A 0.31 tolerated_low_confidence(0.16) benign(0) TCGA-BR-4361-01 18 72347183 72347183 C A ZNF407 Missense_Mutation p.S1403Y 0.34 tolerated(0.05) benign(0.346) TCGA-BR-4361-01 18 72998600 72998600 C T TSHZ1 Missense_Mutation p.A368V 0.31 deleterious(0.01) probably_damaging(0.995) TCGA-BR-4361-01 18 74154821 74154821 A G ZNF516 Missense_Mutation p.C64R 0.10 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 18 74592191 74592191 G A ZNF236 Silent p.P367P 0.31 TCGA-BR-4361-01 18 74631811 74631811 G A ZNF236 Silent p.T1116T 0.31 TCGA-BR-4361-01 18 77894254 77894254 A G ADNP2 Missense_Mutation p.T320A 0.07 tolerated(0.25) benign(0.081) TCGA-BR-4361-01 18 77895696 77895696 T C ADNP2 Silent p.P800P 0.31 TCGA-BR-4361-01 18 8244194 8244194 T A PTPRM Missense_Mutation p.N813K 0.30 deleterious(0.03) benign(0.007) TCGA-BR-4361-01 18 8609919 8609919 A T RAB12 Missense_Mutation p.D65V 0.39 deleterious(0) benign(0.301) TCGA-BR-4361-01 18 8784835 8784835 C T SOGA2 Silent p.D575D 0.20 TCGA-BR-4361-01 18 9256062 9256062 A - ANKRD12 Frame_Shift_Del p.N935Ifs*24 0.28 TCGA-BR-4361-01 18 9887067 9887067 C A TXNDC2 Silent p.S197S 0.24 TCGA-BR-4361-01 19 1055276 1055276 A C ABCA7 Missense_Mutation p.E1377D 0.47 tolerated(1) benign(0.037) TCGA-BR-4361-01 19 10670512 10670512 G A KRI1 Missense_Mutation p.R307C 0.35 deleterious(0) probably_damaging(0.998) TCGA-BR-4361-01 19 10791697 10791697 C T ILF3 Silent p.H320H 0.22 TCGA-BR-4361-01 19 10794194 10794195 - G ILF3 Frame_Shift_Ins p.P616Tfs*6 0.18 TCGA-BR-4361-01 19 1080015 1080015 A G HMHA1 Missense_Mutation p.Y550C 0.36 deleterious(0.01) probably_damaging(0.99) TCGA-BR-4361-01 19 11304581 11304581 G C KANK2 Missense_Mutation p.L59V 0.06 tolerated(0.1) probably_damaging(0.995) TCGA-BR-4361-01 19 11319449 11319449 G A DOCK6 Silent p.P1667P 0.12 TCGA-BR-4361-01 19 11325304 11325304 G A DOCK6 Silent p.H1376H 0.33 TCGA-BR-4361-01 19 11333573 11333573 C T DOCK6 Silent p.T1026T 0.25 TCGA-BR-4361-01 19 11361698 11361698 A G DOCK6 Missense_Mutation p.I191T 0.23 tolerated(0.62) benign(0.066) TCGA-BR-4361-01 19 11488473 11488473 A - EPOR 3'UTR 0.42 TCGA-BR-4361-01 19 11531591 11531591 T C CCDC151 Missense_Mutation p.N567S 0.10 tolerated(0.38) benign(0.053) TCGA-BR-4361-01 19 11651959 11651959 T C CNN1 Silent p.R44R 0.26 TCGA-BR-4361-01 19 11891889 11891889 A G ZNF441 Missense_Mutation p.K417R 0.35 deleterious(0.05) probably_damaging(0.949) TCGA-BR-4361-01 19 11979050 11979050 A G ZNF439 Missense_Mutation p.K389R 0.10 deleterious(0.02) possibly_damaging(0.884) TCGA-BR-4361-01 19 12060478 12060478 T C ZNF700 Missense_Mutation p.C547R 0.15 tolerated(0.32) possibly_damaging(0.821) TCGA-BR-4361-01 19 12502150 12502150 A G ZNF799 Silent p.S354S 0.06 TCGA-BR-4361-01 19 12576123 12576123 A G ZNF709 Missense_Mutation p.F205L 0.26 tolerated(0.09) probably_damaging(0.989) TCGA-BR-4361-01 19 1278884 1278884 G A C19orf24 3'UTR 0.41 TCGA-BR-4361-01 19 13058813 13058813 T C RAD23A Missense_Mutation p.M75T 0.07 deleterious(0.03) possibly_damaging(0.819) TCGA-BR-4361-01 19 13226508 13226508 G A TRMT1 Silent p.L129L 0.36 TCGA-BR-4361-01 19 13879776 13879776 G A MRI1 Missense_Mutation p.R288H 0.21 tolerated(0.17) benign(0.002) TCGA-BR-4361-01 19 14077502 14077502 C A RFX1 Missense_Mutation p.E598D 0.31 tolerated(0.47) benign(0.003) TCGA-BR-4361-01 19 14094383 14094383 G A RFX1 Missense_Mutation p.T115I 0.44 deleterious_low_confidence(0) benign(0.206) TCGA-BR-4361-01 19 14150709 14150709 C T IL27RA Missense_Mutation p.A174V 0.26 tolerated(0.29) benign(0.001) TCGA-BR-4361-01 19 14271413 14271413 C T LPHN1 Missense_Mutation p.A541T 0.48 tolerated(0.35) probably_damaging(0.996) TCGA-BR-4361-01 19 1430254 1430254 C - DAZAP1 Frame_Shift_Del p.P257Rfs*78 0.38 TCGA-BR-4361-01 19 1434841 1434841 C T DAZAP1 Missense_Mutation p.P385L 0.32 tolerated_low_confidence(0.07) probably_damaging(0.966) TCGA-BR-4361-01 19 14520628 14520628 A G DDX39A Missense_Mutation p.Y264H 0.41 tolerated(0.49) benign(0.035) TCGA-BR-4361-01 19 14640488 14640488 T C TECR 5'UTR 0.31 TCGA-BR-4361-01 19 14991549 14991549 C T OR7A17 Missense_Mutation p.A207T 0.30 deleterious_low_confidence(0.01) benign(0.014) TCGA-BR-4361-01 19 1506599 1506599 G A ADAMTSL5 Silent p.G368G 0.32 TCGA-BR-4361-01 19 15296182 15296182 G A NOTCH3 Missense_Mutation p.R728C 0.37 deleterious(0.02) possibly_damaging(0.717) TCGA-BR-4361-01 19 15367880 15367880 C T BRD4 Silent p.P482P 0.22 TCGA-BR-4361-01 19 15838975 15838975 G A OR10H2 Missense_Mutation p.G41D 0.28 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 19 1585130 1585130 C T MBD3 Missense_Mutation p.R65H 0.15 deleterious(0.05) probably_damaging(0.995) TCGA-BR-4361-01 19 16024702 16024702 G A CYP4F11 Missense_Mutation p.A472V 0.25 deleterious(0.04) benign(0.003) TCGA-BR-4361-01 19 1615419 1615419 G A TCF3 Missense_Mutation p.R563C 0.30 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 19 16515477 16515477 G A EPS15L1 Silent p.D450D 0.33 TCGA-BR-4361-01 19 16793252 16793252 T C TMEM38A Missense_Mutation p.S163P 0.28 deleterious(0) possibly_damaging(0.832) TCGA-BR-4361-01 19 17435828 17435828 G - ANO8 Frame_Shift_Del p.P1010Lfs*309 0.36 TCGA-BR-4361-01 19 17439208 17439208 C T ANO8 Silent p.A663A 0.40 TCGA-BR-4361-01 19 17752329 17752329 C T UNC13A Missense_Mutation p.G837R 0.13 deleterious(0) probably_damaging(0.972) TCGA-BR-4361-01 19 18376471 18376471 C T KIAA1683 Missense_Mutation p.E627K 0.06 tolerated(0.51) benign(0.084) TCGA-BR-4361-01 19 18705140 18705140 G A CRLF1 Missense_Mutation p.H377Y 0.25 deleterious_low_confidence(0.04) benign(0.007) TCGA-BR-4361-01 19 18779306 18779306 G - KLHL26 Frame_Shift_Del p.Q369Sfs*22 0.22 TCGA-BR-4361-01 19 1913109 1913109 G A ADAT3 Missense_Mutation p.V355M 0.38 deleterious(0) benign(0.322) TCGA-BR-4361-01 19 19221753 19221753 G - SLC25A42 3'UTR 0.30 TCGA-BR-4361-01 19 19654938 19654938 C T CILP2 Silent p.S528S 0.29 TCGA-BR-4361-01 19 19745393 19745393 G A GMIP Silent p.R669R 0.08 TCGA-BR-4361-01 19 21476052 21476052 A G ZNF708 3'UTR 0.25 TCGA-BR-4361-01 19 22155254 22155254 T C ZNF208 Missense_Mutation p.Y861C 0.08 deleterious(0.02) unknown(0) TCGA-BR-4361-01 19 2226522 2226522 T C DOT1L Silent p.G1334G 0.23 TCGA-BR-4361-01 19 22847068 22847068 C T ZNF492 Silent p.C199C 0.20 TCGA-BR-4361-01 19 2426169 2426169 C A TMPRSS9 3'UTR 0.19 TCGA-BR-4361-01 19 24309406 24309406 A G ZNF254 Missense_Mutation p.S202G 0.19 tolerated(0.22) benign(0) TCGA-BR-4361-01 19 2434861 2434861 C T LMNB2 Silent p.A302A 0.28 TCGA-BR-4361-01 19 30164923 30164923 C T PLEKHF1 Silent p.N59N 0.29 TCGA-BR-4361-01 19 30934517 30934517 A T ZNF536 Missense_Mutation p.E16D 0.32 tolerated_low_confidence(0.74) probably_damaging(0.986) TCGA-BR-4361-01 19 31039479 31039479 G A ZNF536 Missense_Mutation p.A985T 0.26 tolerated(0.13) benign(0.002) TCGA-BR-4361-01 19 31040415 31040415 T A ZNF536 Missense_Mutation p.L1297M 0.28 tolerated_low_confidence(0.18) possibly_damaging(0.894) TCGA-BR-4361-01 19 3121149 3121149 T C GNA11 Missense_Mutation p.L351P 0.12 tolerated(0.27) possibly_damaging(0.565) TCGA-BR-4361-01 19 32845706 32845706 A T ZNF507 Missense_Mutation p.K657M 0.39 deleterious(0) probably_damaging(0.996) TCGA-BR-4361-01 19 33499019 33499019 A G RHPN2 Missense_Mutation p.F221L 0.08 deleterious(0.04) benign(0.247) TCGA-BR-4361-01 19 34945231 34945231 A G UBA2 Missense_Mutation p.N369D 0.30 tolerated(0.16) benign(0.011) TCGA-BR-4361-01 19 3551146 3551146 G A MFSD12 Silent p.C115C 0.30 TCGA-BR-4361-01 19 35617396 35617396 G A LGI4 Silent p.H359H 0.45 TCGA-BR-4361-01 19 36027760 36027760 C T GAPDHS Missense_Mutation p.P38L 0.05 tolerated_low_confidence(0.16) benign(0.041) TCGA-BR-4361-01 19 36046378 36046378 C T ATP4A Silent p.Q707Q 0.34 TCGA-BR-4361-01 19 3613205 3613205 A G CACTIN Missense_Mutation p.L546P 0.25 tolerated(0.07) benign(0.061) TCGA-BR-4361-01 19 36157789 36157789 C T UPK1A Silent p.I25I 0.10 TCGA-BR-4361-01 19 36211882 36211882 C T KMT2B Nonsense_Mutation p.R545* 0.36 TCGA-BR-4361-01 19 36221488 36221488 C T KMT2B Silent p.C1749C 0.28 TCGA-BR-4361-01 19 36347987 36347987 G A KIRREL2 5'UTR 0.29 TCGA-BR-4361-01 19 36363449 36363449 T C APLP1 Silent p.S305S 0.06 TCGA-BR-4361-01 19 36369508 36369508 A G APLP1 Silent p.A534A 0.23 TCGA-BR-4361-01 19 36388622 36388623 - T NFKBID 5'UTR 0.29 TCGA-BR-4361-01 19 3641737 3641737 C T PIP5K1C Missense_Mutation p.V585M 0.09 deleterious_low_confidence(0.05) benign(0.313) TCGA-BR-4361-01 19 36637136 36637136 C T CAPNS1 Nonsense_Mutation p.R215* 0.27 TCGA-BR-4361-01 19 375883 375883 G A THEG Missense_Mutation p.R30C 0.33 tolerated_low_confidence(0.09) possibly_damaging(0.556) TCGA-BR-4361-01 19 37642417 37642418 - T ZNF585A 3'UTR 0.24 TCGA-BR-4361-01 19 38103201 38103201 A G ZNF540 Silent p.G340G 0.08 TCGA-BR-4361-01 19 38160950 38160950 C T ZNF781 Missense_Mutation p.E34K 0.09 tolerated(0.47) possibly_damaging(0.815) TCGA-BR-4361-01 19 38713211 38713211 A G DPF1 Missense_Mutation p.M83T 0.22 deleterious(0) probably_damaging(0.941) TCGA-BR-4361-01 19 38713250 38713250 G A DPF1 Missense_Mutation p.S70L 0.28 deleterious(0) possibly_damaging(0.622) TCGA-BR-4361-01 19 38934419 38934419 T G RYR1 Missense_Mutation p.L136R 0.30 probably_damaging(1) TCGA-BR-4361-01 19 38948774 38948774 T C RYR1 Missense_Mutation p.V670A 0.29 possibly_damaging(0.842) TCGA-BR-4361-01 19 39051818 39051818 G A RYR1 Silent p.A4116A 0.36 TCGA-BR-4361-01 19 39232471 39232471 C T CAPN12 Missense_Mutation p.R169H 0.23 tolerated(1) benign(0.009) TCGA-BR-4361-01 19 39336661 39336661 G A HNRNPL Silent p.N152N 0.37 TCGA-BR-4361-01 19 39669137 39669137 A G PAK4 Missense_Mutation p.E565G 0.22 deleterious(0) probably_damaging(0.941) TCGA-BR-4361-01 19 4013158 4013158 A G PIAS4 Missense_Mutation p.T89A 0.07 tolerated(0.58) benign(0) TCGA-BR-4361-01 19 40320999 40320999 G - DYRK1B Intron 0.29 TCGA-BR-4361-01 19 40328367 40328367 T G FBL Missense_Mutation p.K222N 0.32 deleterious(0.02) benign(0.249) TCGA-BR-4361-01 19 40540940 40540940 C G ZNF780B Missense_Mutation p.G609A 0.06 deleterious(0.02) probably_damaging(0.94) TCGA-BR-4361-01 19 40698374 40698374 G T MAP3K10 Missense_Mutation p.A146S 0.08 deleterious(0) probably_damaging(0.998) TCGA-BR-4361-01 19 40712031 40712031 C T MAP3K10 Missense_Mutation p.R468W 0.38 deleterious(0) probably_damaging(0.913) TCGA-BR-4361-01 19 40899994 40899994 C T PRX Missense_Mutation p.R1422Q 0.29 tolerated(0.31) benign(0.417) TCGA-BR-4361-01 19 40929341 40929341 G - SERTAD1 Frame_Shift_Del p.P38Rfs*34 0.26 TCGA-BR-4361-01 19 41012169 41012169 G C SPTBN4 Silent p.G564G 0.30 TCGA-BR-4361-01 19 41086783 41086783 C T SHKBP1 Missense_Mutation p.A262V 0.12 deleterious(0.04) benign(0.285) TCGA-BR-4361-01 19 41089337 41089337 G A SHKBP1 Missense_Mutation p.A332T 0.29 tolerated(1) benign(0.006) TCGA-BR-4361-01 19 41208524 41208524 C T ADCK4 Missense_Mutation p.A292T 0.13 tolerated(0.24) possibly_damaging(0.777) TCGA-BR-4361-01 19 41265481 41265481 C - SNRPA Frame_Shift_Del p.V133Wfs*15 0.38 TCGA-BR-4361-01 19 41430241 41430241 C T CYP2B7P RNA 0.26 TCGA-BR-4361-01 19 41762394 41762394 G A AXL Missense_Mutation p.G692R 0.35 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 19 41860690 41860690 C T B9D2 Missense_Mutation p.R148H 0.44 deleterious(0.03) benign(0.22) TCGA-BR-4361-01 19 41884359 41884359 T C TMEM91 Missense_Mutation p.F49L 0.32 tolerated_low_confidence(0.26) benign(0.001) TCGA-BR-4361-01 19 42406498 42406498 C T ARHGEF1 Silent p.L512L 0.37 TCGA-BR-4361-01 19 42474440 42474440 C T ATP1A3 Silent p.A826A 0.27 TCGA-BR-4361-01 19 42599726 42599726 G A POU2F2 Missense_Mutation p.R309C 0.35 deleterious(0) probably_damaging(0.998) TCGA-BR-4361-01 19 42873096 42873096 T C MEGF8 Missense_Mutation p.C2128R 0.11 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 19 42879938 42879938 C A MEGF8 Missense_Mutation p.P2450T 0.19 tolerated(0.08) benign(0.113) TCGA-BR-4361-01 19 43382329 43382329 G C PSG1 Missense_Mutation p.H56D 0.09 deleterious(0) probably_damaging(0.91) TCGA-BR-4361-01 19 4361738 4361738 G A SH3GL1 Silent p.D322D 0.41 TCGA-BR-4361-01 19 44039617 44039617 C T ZNF575 Silent p.T172T 0.34 TCGA-BR-4361-01 19 44096011 44096011 A G IRGQ 3'UTR 0.14 TCGA-BR-4361-01 19 44103460 44103460 A G ZNF576 3'UTR 0.22 TCGA-BR-4361-01 19 44278355 44278355 G A KCNN4 Silent p.S224S 0.25 TCGA-BR-4361-01 19 4433467 4433467 G A CHAF1A Silent p.S868S 0.33 TCGA-BR-4361-01 19 44352905 44352905 T C ZNF283 3'UTR 0.15 TCGA-BR-4361-01 19 44378091 44378091 T C ZNF404 Missense_Mutation p.Y92C 0.04 tolerated(0.33) benign(0) TCGA-BR-4361-01 19 4445297 4445297 C T UBXN6 3'UTR 0.38 TCGA-BR-4361-01 19 44469186 44469186 C T ZNF221 Nonsense_Mutation p.R56* 0.26 TCGA-BR-4361-01 19 44792006 44792006 A G ZNF235 Missense_Mutation p.S528P 0.39 deleterious(0) probably_damaging(0.999) TCGA-BR-4361-01 19 4523478 4523478 G - PLIN5 3'UTR 0.27 TCGA-BR-4361-01 19 45296787 45296787 C T CBLC Silent p.A398A 0.43 TCGA-BR-4361-01 19 4538098 4538098 G A LRG1 Missense_Mutation p.P300S 0.07 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 19 45655873 45655873 G A NKPD1 Missense_Mutation p.R608C 0.57 deleterious(0.04) possibly_damaging(0.711) TCGA-BR-4361-01 19 45975912 45975912 C T FOSB Missense_Mutation p.P220L 0.37 deleterious(0) probably_damaging(0.931) TCGA-BR-4361-01 19 45976210 45976210 C T FOSB Silent p.R319R 0.07 TCGA-BR-4361-01 19 45996513 45996513 G - RTN2 Frame_Shift_Del p.P313Lfs*9 0.35 TCGA-BR-4361-01 19 46094726 46094726 G A GPR4 Silent p.T133T 0.37 TCGA-BR-4361-01 19 46269107 46269107 G - SIX5 Frame_Shift_Del p.A625Pfs*31 0.27 TCGA-BR-4361-01 19 46375539 46375539 C T FOXA3 Silent p.Y92Y 0.24 TCGA-BR-4361-01 19 46915764 46915764 C T CCDC8 Missense_Mutation p.A102T 0.27 probably_damaging(0.97) TCGA-BR-4361-01 19 47287949 47287949 A G SLC1A5 Intron 0.35 TCGA-BR-4361-01 19 47425365 47425365 C T ARHGAP35 Nonsense_Mutation p.R1145* 0.30 TCGA-BR-4361-01 19 47570574 47570574 A G ZC3H4 Missense_Mutation p.L984P 0.09 unknown(0) TCGA-BR-4361-01 19 4792751 4792751 A G FEM1A Silent p.E295E 0.30 TCGA-BR-4361-01 19 47969099 47969099 C T SLC8A2 Missense_Mutation p.E188K 0.25 deleterious(0) probably_damaging(0.945) TCGA-BR-4361-01 19 4817394 4817394 C T TICAM1 Silent p.T332T 0.30 TCGA-BR-4361-01 19 48863431 48863431 T C TMEM143 Silent p.E89E 0.19 TCGA-BR-4361-01 19 48965192 48965192 G A KCNJ14 Missense_Mutation p.A71T 0.31 tolerated(0.24) possibly_damaging(0.617) TCGA-BR-4361-01 19 49400605 49400605 C T TULP2 Silent p.Q27Q 0.14 TCGA-BR-4361-01 19 49551986 49551986 A G CGB8 Missense_Mutation p.F4S 0.08 tolerated(0.14) benign(0.003) TCGA-BR-4361-01 19 49934663 49934663 G A SLC17A7 Missense_Mutation p.S398L 0.10 deleterious(0) benign(0.183) TCGA-BR-4361-01 19 50193053 50193053 G A ADM5 5'UTR 0.40 TCGA-BR-4361-01 19 50310496 50310496 A C FUZ Missense_Mutation p.L390R 0.23 deleterious(0) probably_damaging(0.991) TCGA-BR-4361-01 19 50386247 50386247 G A TBC1D17 Silent p.L315L 0.30 TCGA-BR-4361-01 19 50436306 50436306 T C ATF5 Missense_Mutation p.I269T 0.27 deleterious(0.02) probably_damaging(0.994) TCGA-BR-4361-01 19 50784930 50784930 G A MYH14 Missense_Mutation p.R1457Q 0.24 deleterious(0.02) probably_damaging(0.935) TCGA-BR-4361-01 19 50917010 50917010 T C POLD1 Silent p.G754G 0.09 TCGA-BR-4361-01 19 51169816 51169816 G A SHANK1 Missense_Mutation p.R1801C 0.47 unknown(0) TCGA-BR-4361-01 19 51171765 51171765 T C SHANK1 Missense_Mutation p.N1151S 0.27 unknown(0) TCGA-BR-4361-01 19 51201124 51201124 T C SHANK1 Missense_Mutation p.N613D 0.09 possibly_damaging(0.636) TCGA-BR-4361-01 19 51602381 51602381 T C CTU1 Missense_Mutation p.D175G 0.38 deleterious(0) probably_damaging(0.942) TCGA-BR-4361-01 19 52381737 52381737 C T ZNF577 Missense_Mutation p.G31D 0.23 tolerated(1) benign(0.002) TCGA-BR-4361-01 19 52826015 52826015 T C ZNF480 Silent p.I504I 0.18 TCGA-BR-4361-01 19 53086957 53086957 T C ZNF701 3'UTR 0.26 TCGA-BR-4361-01 19 53270656 53270656 G A ZNF600 Missense_Mutation p.A118V 0.33 tolerated(0.1) benign(0.003) TCGA-BR-4361-01 19 53432068 53432068 T C ZNF321P 3'UTR 0.09 TCGA-BR-4361-01 19 53854916 53854916 A G ZNF845 Missense_Mutation p.N330D 0.14 tolerated(0.28) probably_damaging(0.994) TCGA-BR-4361-01 19 53957988 53957988 T A ZNF761 RNA 0.25 TCGA-BR-4361-01 19 53959361 53959361 A G ZNF761 RNA 0.12 TCGA-BR-4361-01 19 54255723 54255723 G T MIR519A1 RNA 0.08 TCGA-BR-4361-01 19 54310804 54310804 C - NLRP12 Frame_Shift_Del p.V730* 0.42 TCGA-BR-4361-01 19 54401306 54401306 C T PRKCG Missense_Mutation p.R345C 0.24 deleterious(0.01) possibly_damaging(0.772) TCGA-BR-4361-01 19 54659550 54659550 T C LENG1 Missense_Mutation p.E235G 0.24 tolerated(0.05) probably_damaging(0.999) TCGA-BR-4361-01 19 54783435 54783435 G T LILRB2 Silent p.T141T 0.21 TCGA-BR-4361-01 19 54966602 54966602 A G LENG8 Missense_Mutation p.K294R 0.07 deleterious(0.03) probably_damaging(0.997) TCGA-BR-4361-01 19 54976609 54976609 G A CDC42EP5 Silent p.D41D 0.38 TCGA-BR-4361-01 19 55085865 55085865 G T LILRA2 Missense_Mutation p.E56D 0.29 tolerated(0.12) benign(0.003) TCGA-BR-4361-01 19 55603866 55603866 C T PPP1R12C Missense_Mutation p.D667N 0.23 tolerated(0.56) benign(0.011) TCGA-BR-4361-01 19 55758529 55758529 A G PPP6R1 Intron 0.08 TCGA-BR-4361-01 19 55773978 55773978 A G HSPBP1 Nonstop_Mutation p.*360Rext*52 0.36 TCGA-BR-4361-01 19 55832401 55832401 A G TMEM150B Missense_Mutation p.W2R 0.24 tolerated(0.07) benign(0.132) TCGA-BR-4361-01 19 56089484 56089484 T C ZNF579 Missense_Mutation p.K508E 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.899) TCGA-BR-4361-01 19 56223792 56223792 C T NLRP9 Missense_Mutation p.C889Y 0.30 tolerated(0.24) benign(0.023) TCGA-BR-4361-01 19 56368987 56368987 G A NLRP4 Intron 0.22 TCGA-BR-4361-01 19 5700824 5700824 C T LONP1 Missense_Mutation p.M494I 0.07 deleterious(0) possibly_damaging(0.802) TCGA-BR-4361-01 19 57066801 57066801 A T ZFP28 3'UTR 0.28 TCGA-BR-4361-01 19 57175421 57175421 G A ZNF835 Silent p.L382L 0.28 TCGA-BR-4361-01 19 57802980 57802980 T C ZNF460 Silent p.I357I 0.12 TCGA-BR-4361-01 19 5784045 5784045 G A PRR22 Silent p.C71C 0.41 TCGA-BR-4361-01 19 57955159 57955160 - A ZNF749 Frame_Shift_Ins p.T217Nfs*3 0.32 TCGA-BR-4361-01 19 579603 579603 G - BSG Frame_Shift_Del p.G175Afs*4 0.14 TCGA-BR-4361-01 19 58017804 58017804 A G ZNF773 Missense_Mutation p.Q114R 0.06 tolerated(0.1) benign(0.176) TCGA-BR-4361-01 19 58371166 58371166 G A ZNF587 Silent p.R462R 0.05 TCGA-BR-4361-01 19 58384561 58384561 C T ZNF814 Missense_Mutation p.A733T 0.40 tolerated(0.69) possibly_damaging(0.654) TCGA-BR-4361-01 19 58490719 58490719 A G ZNF606 Silent p.L443L 0.40 TCGA-BR-4361-01 19 58578892 58578892 T A ZNF135 Missense_Mutation p.I371N 0.10 deleterious(0) probably_damaging(0.961) TCGA-BR-4361-01 19 58722975 58722975 G - ZNF274 Frame_Shift_Del p.L302Cfs*13 0.09 TCGA-BR-4361-01 19 58772421 58772424 TGTT - ZNF544 Frame_Shift_Del p.F151Lfs*20 0.38 TCGA-BR-4361-01 19 58926931 58926931 G T ZNF584 Missense_Mutation p.E70D 0.31 tolerated(0.07) benign(0.07) TCGA-BR-4361-01 19 6707497 6707497 G A C3 Missense_Mutation p.T676M 0.32 tolerated(1) benign(0.003) TCGA-BR-4361-01 19 7075715 7075715 C T ZNF557 Silent p.G27G 0.24 TCGA-BR-4361-01 19 736048 736048 A G PALM Missense_Mutation p.T158A 0.09 tolerated(0.56) benign(0.006) TCGA-BR-4361-01 19 7675769 7675769 C - CAMSAP3 Frame_Shift_Del p.R363Gfs*42 0.15 TCGA-BR-4361-01 19 7677000 7677000 C T CAMSAP3 Missense_Mutation p.P568S 0.15 tolerated(0.6) benign(0.012) TCGA-BR-4361-01 19 7970696 7970696 T C MAP2K7 Intron 0.04 TCGA-BR-4361-01 19 8028431 8028431 T C ELAVL1 Missense_Mutation p.N306S 0.28 deleterious(0.03) probably_damaging(0.999) TCGA-BR-4361-01 19 8137979 8137979 G A FBN3 Silent p.G2635G 0.29 TCGA-BR-4361-01 19 8162273 8162273 G - FBN3 Frame_Shift_Del p.A1730Pfs*9 0.15 TCGA-BR-4361-01 19 8196449 8196449 G A FBN3 Missense_Mutation p.A660V 0.29 tolerated(0.05) benign(0.073) TCGA-BR-4361-01 19 828274 828274 C T AZU1 Missense_Mutation p.P35S 0.23 deleterious(0.03) benign(0.009) TCGA-BR-4361-01 19 8436327 8436327 C T ANGPTL4 Silent p.S320S 0.33 TCGA-BR-4361-01 19 8563852 8563852 G A PRAM1 Silent p.D280D 0.11 TCGA-BR-4361-01 19 8668717 8668717 C T ADAMTS10 Missense_Mutation p.G163S 0.30 tolerated(0.87) benign(0.017) TCGA-BR-4361-01 19 9048747 9048747 T C MUC16 Missense_Mutation p.T10962A 0.28 benign(0.007) TCGA-BR-4361-01 19 9056901 9056901 G A MUC16 Missense_Mutation p.T10182I 0.24 benign(0.145) TCGA-BR-4361-01 19 9066859 9066859 T C MUC16 Missense_Mutation p.T6863A 0.45 unknown(0) TCGA-BR-4361-01 19 9075275 9075275 T C MUC16 Missense_Mutation p.I4057M 0.34 unknown(0) TCGA-BR-4361-01 19 9084585 9084585 T C MUC16 Silent p.S2410S 0.39 TCGA-BR-4361-01 19 9270967 9270967 T C ZNF317 Missense_Mutation p.Y216H 0.21 tolerated(1) benign(0.001) TCGA-BR-4361-01 19 9362217 9362217 T - OR7E24 Frame_Shift_Del p.F168Lfs*12 0.35 TCGA-BR-4361-01 19 9452554 9452554 G A ZNF559 Missense_Mutation p.G143R 0.28 tolerated(0.2) probably_damaging(0.992) TCGA-BR-4361-01 1 100515493 100515493 A G HIAT1 Missense_Mutation p.Y38C 0.22 deleterious(0.01) probably_damaging(0.99) TCGA-BR-4361-01 1 100736176 100736176 A G RTCA Silent p.E131E 0.32 TCGA-BR-4361-01 1 100928305 100928305 C T CDC14A Missense_Mutation p.R236C 0.29 deleterious(0) benign(0.179) TCGA-BR-4361-01 1 101431476 101431476 T C SLC30A7 Splice_Site p.X361_splice 0.07 TCGA-BR-4361-01 1 101458257 101458257 T C DPH5 Silent p.V190V 0.34 TCGA-BR-4361-01 1 10211616 10211616 A G UBE4B Missense_Mutation p.T975A 0.11 deleterious(0.01) possibly_damaging(0.525) TCGA-BR-4361-01 1 103474066 103474066 G C COL11A1 Missense_Mutation p.P546A 0.27 unknown(0) TCGA-BR-4361-01 1 10381811 10381811 C T KIF1B Missense_Mutation p.R706W 0.29 deleterious(0) possibly_damaging(0.774) TCGA-BR-4361-01 1 109242695 109242695 T - PRPF38B 3'UTR 0.28 TCGA-BR-4361-01 1 109342883 109342885 TTG - STXBP3 In_Frame_Del p.C498del 0.44 TCGA-BR-4361-01 1 109649218 109649218 A G C1orf194 Silent p.A114A 0.14 TCGA-BR-4361-01 1 109813589 109813589 T G CELSR2 Silent p.P2508P 0.24 TCGA-BR-4361-01 1 110169810 110169810 C - AMPD2 Frame_Shift_Del p.P300Lfs*63 0.29 TCGA-BR-4361-01 1 110172064 110172064 A G AMPD2 Missense_Mutation p.Y659C 0.10 deleterious(0) probably_damaging(0.998) TCGA-BR-4361-01 1 110301240 110301240 C A EPS8L3 Silent p.G170G 0.23 TCGA-BR-4361-01 1 110925584 110925584 T C SLC16A4 Missense_Mutation p.N31S 0.28 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 1 110996681 110996681 C T PROK1 Silent p.G57G 0.35 TCGA-BR-4361-01 1 11105575 11105575 G A MASP2 Missense_Mutation p.A145V 0.26 tolerated(0.27) benign(0.035) TCGA-BR-4361-01 1 112299330 112299330 G C DDX20 Missense_Mutation p.D122H 0.26 deleterious(0) probably_damaging(0.998) TCGA-BR-4361-01 1 113653136 113653136 A G LRIG2 Missense_Mutation p.N584D 0.30 deleterious(0) probably_damaging(0.999) TCGA-BR-4361-01 1 113657106 113657106 C T LRIG2 Missense_Mutation p.A713V 0.33 tolerated(0.67) benign(0.416) TCGA-BR-4361-01 1 114524259 114524259 T C OLFML3 Silent p.P363P 0.07 TCGA-BR-4361-01 1 115226954 115226954 T C AMPD1 Missense_Mutation p.K171R 0.30 tolerated(0.18) benign(0.007) TCGA-BR-4361-01 1 1154242 1154242 G A SDF4 Silent p.L215L 0.06 TCGA-BR-4361-01 1 116936320 116936320 G - ATP1A1 Frame_Shift_Del p.G547Afs*7 0.27 TCGA-BR-4361-01 1 11766661 11766661 G C DRAXIN Missense_Mutation p.A116P 0.39 tolerated(0.27) possibly_damaging(0.653) TCGA-BR-4361-01 1 119575543 119575543 A G WARS2 Silent p.G358G 0.30 TCGA-BR-4361-01 1 12364654 12364655 - G VPS13D Frame_Shift_Ins p.Q2105Afs*17 0.24 TCGA-BR-4361-01 1 13498210 13498210 T - PRAMEF16 3'UTR 0.11 TCGA-BR-4361-01 1 14108339 14108339 A G PRDM2 Missense_Mutation p.K1350R 0.05 unknown(0) TCGA-BR-4361-01 1 1421557 1421557 T C ATAD3B Missense_Mutation p.L344P 0.06 tolerated(0.27) benign(0.008) TCGA-BR-4361-01 1 144828665 144828665 T C NBPF9 Missense_Mutation p.F645L 0.22 tolerated(0.72) probably_damaging(0.981) TCGA-BR-4361-01 1 144930752 144930752 T C PDE4DIP Intron 0.13 TCGA-BR-4361-01 1 145562258 145562258 G A ANKRD35 Missense_Mutation p.S649N 0.40 tolerated(0.39) benign(0) TCGA-BR-4361-01 1 149858676 149858676 A G HIST2H2AC Missense_Mutation p.Y51C 0.31 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BR-4361-01 1 150724313 150724313 A G CTSS Missense_Mutation p.Y191H 0.34 deleterious(0) probably_damaging(0.998) TCGA-BR-4361-01 1 150915397 150915397 C T SETDB1 Missense_Mutation p.A248V 0.11 deleterious(0) probably_damaging(0.996) TCGA-BR-4361-01 1 151062940 151062940 T C GABPB2 Missense_Mutation p.V56A 0.16 deleterious(0.02) possibly_damaging(0.721) TCGA-BR-4361-01 1 151341565 151341568 GTGC - SELENBP1 Frame_Shift_Del p.R91Pfs*56 0.27 TCGA-BR-4361-01 1 151378275 151378275 T C POGZ Missense_Mutation p.H1079R 0.38 deleterious(0) probably_damaging(0.997) TCGA-BR-4361-01 1 151491656 151491656 C T CGN Missense_Mutation p.R221W 0.30 deleterious(0) possibly_damaging(0.847) TCGA-BR-4361-01 1 151502450 151502450 G A CGN Silent p.T724T 0.34 TCGA-BR-4361-01 1 151502999 151502999 C T CGN Missense_Mutation p.A783V 0.30 tolerated(0.11) benign(0.008) TCGA-BR-4361-01 1 151664929 151664929 A G SNX27 Missense_Mutation p.T420A 0.14 tolerated(0.43) benign(0.073) TCGA-BR-4361-01 1 152286065 152286065 C A FLG Missense_Mutation p.D433Y 0.32 probably_damaging(0.995) TCGA-BR-4361-01 1 153947257 153947257 G A JTB Silent p.V113V 0.36 TCGA-BR-4361-01 1 153949675 153949675 C T JTB Nonsense_Mutation p.W18* 0.09 TCGA-BR-4361-01 1 154227697 154227697 T C UBAP2L Missense_Mutation p.V660A 0.06 tolerated(0.19) unknown(0) TCGA-BR-4361-01 1 154315770 154315770 G A ATP8B2 Silent p.S578S 0.29 TCGA-BR-4361-01 1 154317917 154317917 T C ATP8B2 Missense_Mutation p.S897P 0.32 deleterious(0) probably_damaging(0.996) TCGA-BR-4361-01 1 154520288 154520288 A - TDRD10 3'UTR 0.33 TCGA-BR-4361-01 1 155257627 155257627 T C HCN3 Silent p.S566S 0.11 TCGA-BR-4361-01 1 15541903 15541903 G A TMEM51 Missense_Mutation p.G107E 0.42 tolerated(1) benign(0.001) TCGA-BR-4361-01 1 155932848 155932848 T C ARHGEF2 Missense_Mutation p.D284G 0.08 deleterious(0) possibly_damaging(0.847) TCGA-BR-4361-01 1 156352561 156352561 A G RHBG Missense_Mutation p.I379V 0.13 tolerated(0.84) benign(0.004) TCGA-BR-4361-01 1 156354646 156354646 C T RHBG 3'UTR 0.32 TCGA-BR-4361-01 1 156437323 156437323 G A MEF2D 3'UTR 0.32 TCGA-BR-4361-01 1 156621381 156621381 T C BCAN Silent p.S399S 0.36 TCGA-BR-4361-01 1 156917590 156917590 C T ARHGEF11 Missense_Mutation p.R771Q 0.34 deleterious(0.02) benign(0.052) TCGA-BR-4361-01 1 157738348 157738348 T C FCRL2 Missense_Mutation p.S247G 0.27 tolerated(0.09) possibly_damaging(0.582) TCGA-BR-4361-01 1 158517519 158517519 T C OR6Y1 Missense_Mutation p.D126G 0.20 deleterious(0.01) probably_damaging(0.987) TCGA-BR-4361-01 1 159902365 159902365 G T IGSF9 Silent p.S394S 0.36 TCGA-BR-4361-01 1 160000350 160000350 A G PIGM Silent p.L394L 0.05 TCGA-BR-4361-01 1 160012018 160012018 G - KCNJ10 Frame_Shift_Del p.P102Rfs*96 0.30 TCGA-BR-4361-01 1 160099084 160099084 C T ATP1A2 Missense_Mutation p.S452L 0.10 deleterious(0.03) possibly_damaging(0.816) TCGA-BR-4361-01 1 160100055 160100056 - G ATP1A2 Frame_Shift_Ins p.L545Tfs*28 0.28 TCGA-BR-4361-01 1 160187346 160187346 T C DCAF8 3'UTR 0.30 TCGA-BR-4361-01 1 160313199 160313199 G - NCSTN Frame_Shift_Del p.G6Vfs*22 0.17 TCGA-BR-4361-01 1 161011634 161011634 C T USF1 Silent p.A93A 0.29 TCGA-BR-4361-01 1 161092087 161092087 T C DEDD Silent p.L269L 0.33 TCGA-BR-4361-01 1 161203070 161203070 T G NR1I3 Silent p.A99A 0.32 TCGA-BR-4361-01 1 161487831 161487831 A G FCGR2A Missense_Mutation p.T283A 0.36 tolerated(0.08) benign(0.014) TCGA-BR-4361-01 1 161495044 161495044 T - HSPA6 Frame_Shift_Del p.F200Lfs*22 0.41 TCGA-BR-4361-01 1 161495245 161495245 G A HSPA6 Missense_Mutation p.R266H 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.574) TCGA-BR-4361-01 1 16199578 16199578 T C SPEN Silent p.G117G 0.36 TCGA-BR-4361-01 1 162467856 162467856 G A UHMK1 Silent p.L22L 0.30 TCGA-BR-4361-01 1 16255224 16255224 C T SPEN Missense_Mutation p.S830F 0.33 probably_damaging(0.996) TCGA-BR-4361-01 1 162731167 162731167 G A DDR2 Missense_Mutation p.R341Q 0.24 deleterious(0.01) possibly_damaging(0.854) TCGA-BR-4361-01 1 16355671 16355671 G A CLCNKA Silent p.A368A 0.22 TCGA-BR-4361-01 1 16475193 16475193 C T EPHA2 Missense_Mutation p.R168H 0.43 deleterious(0) probably_damaging(0.963) TCGA-BR-4361-01 1 165398092 165398092 C T RXRG Missense_Mutation p.R54Q 0.28 tolerated_low_confidence(0.61) probably_damaging(0.968) TCGA-BR-4361-01 1 165624786 165624786 A G MGST3 3'UTR 0.36 TCGA-BR-4361-01 1 167368478 167368478 A - POU2F1 Frame_Shift_Del p.E444Rfs*2 0.27 TCGA-BR-4361-01 1 16767271 16767271 G A NECAP2 Silent p.G5G 0.21 TCGA-BR-4361-01 1 167825464 167825464 C T ADCY10 Missense_Mutation p.D704N 0.09 tolerated(0.19) possibly_damaging(0.722) TCGA-BR-4361-01 1 169510030 169510030 A G F5 Missense_Mutation p.L1433P 0.23 deleterious_low_confidence(0.05) benign(0.211) TCGA-BR-4361-01 1 169823471 169823472 - T SCYL3 Frame_Shift_Ins p.D704Gfs*2 0.12 TCGA-BR-4361-01 1 170940930 170940930 G A MROH9 Silent p.E174E 0.26 TCGA-BR-4361-01 1 171505354 171505354 T C PRRC2C Missense_Mutation p.S742P 0.28 unknown(0) TCGA-BR-4361-01 1 172538216 172538216 G T SUCO Missense_Mutation p.D264Y 0.06 deleterious(0) possibly_damaging(0.886) TCGA-BR-4361-01 1 173493985 173493985 A G SLC9C2 Missense_Mutation p.L816P 0.06 tolerated(0.11) possibly_damaging(0.878) TCGA-BR-4361-01 1 173751271 173751271 G T KLHL20 Missense_Mutation p.A550S 0.14 tolerated(0.07) possibly_damaging(0.755) TCGA-BR-4361-01 1 17418998 17418998 C T PADI2 Missense_Mutation p.R187Q 0.30 deleterious(0.03) probably_damaging(0.952) TCGA-BR-4361-01 1 175299243 175299243 T C TNR Missense_Mutation p.K1254E 0.11 deleterious(0) probably_damaging(0.999) TCGA-BR-4361-01 1 175365680 175365680 G A TNR Missense_Mutation p.H414Y 0.20 tolerated(1) benign(0.001) TCGA-BR-4361-01 1 179064413 179064413 T C TOR3A 3'UTR 0.35 TCGA-BR-4361-01 1 179077894 179077894 T - ABL2 Frame_Shift_Del p.K836Nfs*34 0.27 TCGA-BR-4361-01 1 179090927 179090927 G A ABL2 Silent p.L255L 0.42 TCGA-BR-4361-01 1 180049727 180049727 C G CEP350 Missense_Mutation p.H2019D 0.08 benign(0.082) TCGA-BR-4361-01 1 180794433 180794433 A G XPR1 Missense_Mutation p.T363A 0.11 tolerated(0.18) benign(0.11) TCGA-BR-4361-01 1 181620510 181620510 T C CACNA1E Missense_Mutation p.Y330H 0.10 deleterious(0.01) benign(0) TCGA-BR-4361-01 1 184868364 184868364 C T FAM129A Missense_Mutation p.R45H 0.28 tolerated(0.16) benign(0.309) TCGA-BR-4361-01 1 1849288 1849288 T C TMEM52 3'UTR 0.26 TCGA-BR-4361-01 1 185897791 185897791 A T HMCN1 Missense_Mutation p.D515V 0.05 probably_damaging(0.994) TCGA-BR-4361-01 1 185984507 185984507 A G HMCN1 Missense_Mutation p.Y1616C 0.11 probably_damaging(0.999) TCGA-BR-4361-01 1 186094843 186094843 A - HMCN1 Frame_Shift_Del p.D4205Tfs*5 0.34 TCGA-BR-4361-01 1 186277364 186277364 C - PRG4 Frame_Shift_Del p.K840Rfs*72 0.24 TCGA-BR-4361-01 1 186282951 186282951 T C TPR 3'UTR 0.29 TCGA-BR-4361-01 1 186919810 186919810 T C PLA2G4A Missense_Mutation p.I429T 0.21 tolerated(0.1) possibly_damaging(0.891) TCGA-BR-4361-01 1 193066846 193066846 G T GLRX2 Silent p.S77S 0.29 TCGA-BR-4361-01 1 19437312 19437312 G T UBR4 Missense_Mutation p.A3939D 0.30 probably_damaging(0.981) TCGA-BR-4361-01 1 196227479 196227479 C T KCNT2 Missense_Mutation p.R1019Q 0.11 deleterious(0.02) possibly_damaging(0.844) TCGA-BR-4361-01 1 19632510 19632510 A G AKR7A2 Splice_Site p.X306_splice 0.21 TCGA-BR-4361-01 1 197073120 197073120 G A ASPM Missense_Mutation p.A1754V 0.07 deleterious(0) probably_damaging(0.994) TCGA-BR-4361-01 1 197144177 197144177 A G ZBTB41 Missense_Mutation p.Y650H 0.08 deleterious(0.04) probably_damaging(0.982) TCGA-BR-4361-01 1 197145784 197145784 G A ZBTB41 Missense_Mutation p.H597Y 0.09 deleterious(0) probably_damaging(0.98) TCGA-BR-4361-01 1 200817864 200817864 A G CAMSAP2 Missense_Mutation p.N656S 0.06 tolerated(0.64) benign(0.002) TCGA-BR-4361-01 1 201012511 201012511 T C CACNA1S Missense_Mutation p.Q1649R 0.35 tolerated_low_confidence(0.34) benign(0.028) TCGA-BR-4361-01 1 201027620 201027620 C A CACNA1S Splice_Site p.X1176_splice 0.53 TCGA-BR-4361-01 1 201058496 201058496 C T CACNA1S Missense_Mutation p.G264S 0.44 deleterious(0.04) benign(0.081) TCGA-BR-4361-01 1 201183362 201183362 C T IGFN1 Missense_Mutation p.A2929V 0.17 probably_damaging(0.958) TCGA-BR-4361-01 1 201187691 201187691 G A IGFN1 Missense_Mutation p.G3268D 0.29 probably_damaging(1) TCGA-BR-4361-01 1 201983122 201983122 T C ELF3 Missense_Mutation p.M324T 0.08 deleterious(0) probably_damaging(0.989) TCGA-BR-4361-01 1 201984339 201984339 A G ELF3 Missense_Mutation p.Y335C 0.08 deleterious(0) probably_damaging(0.954) TCGA-BR-4361-01 1 202287753 202287753 C T LGR6 Silent p.H774H 0.10 TCGA-BR-4361-01 1 202698009 202698009 A G KDM5B 3'UTR 0.39 TCGA-BR-4361-01 1 204091106 204091106 C A SOX13 Missense_Mutation p.P285H 0.38 deleterious(0.03) possibly_damaging(0.653) TCGA-BR-4361-01 1 204228411 204228411 C - PLEKHA6 Frame_Shift_Del p.V328Yfs*172 0.30 TCGA-BR-4361-01 1 205030997 205030997 G A CNTN2 Silent p.Q326Q 0.07 TCGA-BR-4361-01 1 205492416 205492416 C T CDK18 Missense_Mutation p.R41W 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.761) TCGA-BR-4361-01 1 205592853 205592853 T C ELK4 Missense_Mutation p.N53S 0.04 tolerated(0.38) benign(0.044) TCGA-BR-4361-01 1 205719147 205719147 C - NUCKS1 5'UTR 0.42 TCGA-BR-4361-01 1 205801816 205801816 C T PM20D1 Missense_Mutation p.V399I 0.30 tolerated(1) benign(0.006) TCGA-BR-4361-01 1 205884266 205884266 C A SLC26A9 Missense_Mutation p.E806D 0.35 deleterious_low_confidence(0) benign(0) TCGA-BR-4361-01 1 206649592 206649592 C T IKBKE Missense_Mutation p.R143C 0.32 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 1 206821441 206821441 A - DYRK3 Frame_Shift_Del p.N302Ifs*35 0.31 TCGA-BR-4361-01 1 208225688 208225688 T C PLXNA2 Missense_Mutation p.T993A 0.05 tolerated(0.06) benign(0.048) TCGA-BR-4361-01 1 20827485 20827485 C T MUL1 Missense_Mutation p.A253T 0.32 tolerated(0.11) benign(0.02) TCGA-BR-4361-01 1 209785386 209785386 C A CAMK1G Missense_Mutation p.L389I 0.14 tolerated_low_confidence(0.26) benign(0.073) TCGA-BR-4361-01 1 209800773 209800773 C T LAMB3 Silent p.P480P 0.31 TCGA-BR-4361-01 1 211847636 211847636 A G NEK2 Splice_Site p.X105_splice 0.05 TCGA-BR-4361-01 1 212002654 212002654 C T LPGAT1 5'UTR 0.34 TCGA-BR-4361-01 1 212254037 212254037 A G DTL Silent p.K402K 0.04 TCGA-BR-4361-01 1 214557902 214557902 G A PTPN14 Silent p.S432S 0.32 TCGA-BR-4361-01 1 214826249 214826249 G T CENPF Missense_Mutation p.D2747Y 0.33 probably_damaging(0.943) TCGA-BR-4361-01 1 215792534 215792534 T C KCTD3 Missense_Mutation p.L596P 0.28 deleterious(0) probably_damaging(0.999) TCGA-BR-4361-01 1 218036154 218036154 A G SPATA17 Silent p.S348S 0.31 TCGA-BR-4361-01 1 22158013 22158013 C A HSPG2 Missense_Mutation p.G3799C 0.06 probably_damaging(0.967) TCGA-BR-4361-01 1 22165334 22165334 G A HSPG2 Silent p.A3378A 0.18 TCGA-BR-4361-01 1 221875673 221875678 GAAAGA AGAAAG DUSP10 3'UTR 0.30 TCGA-BR-4361-01 1 223987704 223987704 C T TP53BP2 Missense_Mutation p.R461H 0.17 deleterious(0.03) probably_damaging(0.998) TCGA-BR-4361-01 1 22417930 22417930 A G CDC42 Missense_Mutation p.K166E 0.28 deleterious(0) possibly_damaging(0.875) TCGA-BR-4361-01 1 226058796 226058796 C T TMEM63A Silent p.L117L 0.18 TCGA-BR-4361-01 1 226924812 226924812 G A ITPKB Silent p.A116A 0.25 TCGA-BR-4361-01 1 228284858 228284858 A - ARF1 Frame_Shift_Del p.E17Kfs*27 0.32 TCGA-BR-4361-01 1 228451850 228451850 C T OBSCN Missense_Mutation p.A1724V 0.29 benign(0.148) TCGA-BR-4361-01 1 228496809 228496809 T C OBSCN Missense_Mutation p.V5207A 0.40 benign(0.431) TCGA-BR-4361-01 1 22915907 22915907 C T EPHA8 Intron 0.40 TCGA-BR-4361-01 1 230800261 230800261 G A COG2 Missense_Mutation p.R138Q 0.19 tolerated(0.68) benign(0.01) TCGA-BR-4361-01 1 231061307 231061307 T C TTC13 Missense_Mutation p.Q515R 0.31 tolerated(0.06) benign(0.082) TCGA-BR-4361-01 1 23111412 23111412 G A EPHB2 Silent p.S218S 0.26 TCGA-BR-4361-01 1 231409726 231409726 A G GNPAT Missense_Mutation p.K554R 0.26 tolerated(0.49) benign(0.002) TCGA-BR-4361-01 1 233334764 233334764 A G PCNXL2 Missense_Mutation p.I996T 0.58 deleterious(0.04) benign(0.002) TCGA-BR-4361-01 1 23399803 23399803 A G KDM1A Silent p.S547S 0.08 TCGA-BR-4361-01 1 234444889 234444889 G T SLC35F3 Missense_Mutation p.K217N 0.23 deleterious(0.02) probably_damaging(0.928) TCGA-BR-4361-01 1 235345681 235345681 T C ARID4B Silent p.S851S 0.29 TCGA-BR-4361-01 1 235613631 235613631 T C B3GALNT2 Missense_Mutation p.T465A 0.42 tolerated(0.6) benign(0.002) TCGA-BR-4361-01 1 235973006 235973006 G T LYST Missense_Mutation p.P371H 0.06 deleterious(0.05) probably_damaging(0.991) TCGA-BR-4361-01 1 236143949 236143949 G T NID1 Missense_Mutation p.L1078I 0.32 tolerated(0.08) probably_damaging(0.936) TCGA-BR-4361-01 1 236201424 236201424 C T NID1 Missense_Mutation p.G422D 0.33 deleterious(0) probably_damaging(0.999) TCGA-BR-4361-01 1 236735796 236735796 T C HEATR1 Missense_Mutation p.T1208A 0.21 deleterious(0.04) benign(0.117) TCGA-BR-4361-01 1 236966835 236966835 G A MTR Missense_Mutation p.E48K 0.28 deleterious(0) probably_damaging(0.992) TCGA-BR-4361-01 1 237054567 237054567 G A MTR Missense_Mutation p.A1048T 0.10 tolerated(0.92) benign(0.001) TCGA-BR-4361-01 1 23751214 23751214 A T TCEA3 5'UTR 0.15 TCGA-BR-4361-01 1 237955558 237955558 C T RYR2 Missense_Mutation p.R4573C 0.22 probably_damaging(0.985) TCGA-BR-4361-01 1 238045775 238045775 A G ZP4 Missense_Mutation p.S524P 0.07 tolerated(0.11) possibly_damaging(0.548) TCGA-BR-4361-01 1 24113776 24113776 C T PITHD1 Silent p.H182H 0.26 TCGA-BR-4361-01 1 242020786 242020786 T C EXO1 Splice_Site p.X181_splice 0.37 TCGA-BR-4361-01 1 242253062 242253062 A - PLD5 3'UTR 0.28 TCGA-BR-4361-01 1 24397622 24397624 CTC - MYOM3 In_Frame_Del p.E1045del 0.37 TCGA-BR-4361-01 1 24421461 24421461 G A MYOM3 Silent p.S270S 0.34 TCGA-BR-4361-01 1 245021316 245021316 A G HNRNPU Silent p.C497C 0.10 TCGA-BR-4361-01 1 245847605 245847605 C - KIF26B Frame_Shift_Del p.H777Tfs*23 0.42 TCGA-BR-4361-01 1 24664485 24664485 G A GRHL3 Missense_Mutation p.V282M 0.23 deleterious(0.02) benign(0.389) TCGA-BR-4361-01 1 247012967 247012967 T C AHCTF1 Missense_Mutation p.N2123S 0.30 tolerated(0.08) benign(0.02) TCGA-BR-4361-01 1 247599444 247599444 T C NLRP3 Splice_Site p.X890_splice 0.28 TCGA-BR-4361-01 1 247655201 247655201 C T OR2W5 RNA 0.35 TCGA-BR-4361-01 1 248436525 248436525 A G OR2T33 Missense_Mutation p.Y198H 0.11 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 1 26013011 26013011 C T MAN1C1 Silent p.Y207Y 0.25 TCGA-BR-4361-01 1 26104628 26104629 - G MAN1C1 Frame_Shift_Ins p.L433Afs*67 0.30 TCGA-BR-4361-01 1 26164013 26164013 T C AUNIP Silent p.L37L 0.05 TCGA-BR-4361-01 1 27087503 27087503 C T ARID1A Nonsense_Mutation p.R693* 0.25 TCGA-BR-4361-01 1 27106804 27106804 C - ARID1A Frame_Shift_Del p.F2141Sfs*59 0.31 TCGA-BR-4361-01 1 27121133 27121133 G A PIGV Missense_Mutation p.R203H 0.27 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 1 27688286 27688286 C T MAP3K6 Silent p.G496G 0.22 TCGA-BR-4361-01 1 27721144 27721144 T C GPR3 Missense_Mutation p.L281P 0.06 tolerated(0.09) possibly_damaging(0.88) TCGA-BR-4361-01 1 27875576 27875576 G A AHDC1 Silent p.S1017S 0.41 TCGA-BR-4361-01 1 29016643 29016643 C A GMEB1 Missense_Mutation p.N62K 0.25 tolerated(0.67) benign(0.014) TCGA-BR-4361-01 1 29342242 29342242 C T EPB41 Missense_Mutation p.P290S 0.11 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 1 29379717 29379717 A - EPB41 Frame_Shift_Del p.T582Qfs*11 0.11 TCGA-BR-4361-01 1 29639170 29639170 T C PTPRU Missense_Mutation p.V1070A 0.26 deleterious(0) probably_damaging(0.999) TCGA-BR-4361-01 1 31189044 31189044 C T MATN1 Missense_Mutation p.V307M 0.33 deleterious(0) probably_damaging(0.998) TCGA-BR-4361-01 1 31194406 31194406 C T MATN1 Missense_Mutation p.R96Q 0.24 tolerated(0.23) benign(0.009) TCGA-BR-4361-01 1 31349583 31349583 G A SDC3 Missense_Mutation p.A229V 0.29 tolerated(0.73) unknown(0) TCGA-BR-4361-01 1 31350023 31350023 G A SDC3 Intron 0.20 TCGA-BR-4361-01 1 31769597 31769597 A G SNRNP40 Translation_Start_Site p.M1? 0.29 deleterious_low_confidence(0) benign(0.024) TCGA-BR-4361-01 1 31821730 31821730 T A ZCCHC17 Missense_Mutation p.I158K 0.05 deleterious(0) possibly_damaging(0.759) TCGA-BR-4361-01 1 32087173 32087173 C T HCRTR1 Missense_Mutation p.R240C 0.23 deleterious(0) possibly_damaging(0.723) TCGA-BR-4361-01 1 32131193 32131193 C T COL16A1 Silent p.P1161P 0.25 TCGA-BR-4361-01 1 32256573 32256573 C - SPOCD1 Frame_Shift_Del p.R1095Gfs*32 0.23 TCGA-BR-4361-01 1 32502514 32502514 A G KHDRBS1 Missense_Mutation p.M259V 0.10 tolerated(0.4) benign(0.039) TCGA-BR-4361-01 1 33060697 33060697 A C ZBTB8A Missense_Mutation p.H289P 0.35 possibly_damaging(0.827) TCGA-BR-4361-01 1 33363782 33363782 G A TMEM54 Missense_Mutation p.A52V 0.38 tolerated(0.06) probably_damaging(0.956) TCGA-BR-4361-01 1 33612784 33612784 G A TRIM62 Silent p.R474R 0.39 TCGA-BR-4361-01 1 33836082 33836082 G A PHC2 Silent p.G172G 0.33 TCGA-BR-4361-01 1 34401359 34401359 A T CSMD2 Splice_Site p.X198_splice 0.11 TCGA-BR-4361-01 1 35260745 35260745 C T GJA4 Missense_Mutation p.P311S 0.11 tolerated(0.85) benign(0) TCGA-BR-4361-01 1 35484912 35484912 A - ZMYM6 Intron 0.37 TCGA-BR-4361-01 1 3564057 3564057 G A WRAP73 Missense_Mutation p.T46M 0.10 deleterious(0) possibly_damaging(0.776) TCGA-BR-4361-01 1 35825030 35825031 - T ZMYM4 Frame_Shift_Ins p.D200* 0.24 TCGA-BR-4361-01 1 35916003 35916003 C T KIAA0319L Missense_Mutation p.V724I 0.27 tolerated(0.09) benign(0.04) TCGA-BR-4361-01 1 35928292 35928292 G - KIAA0319L Frame_Shift_Del p.I409Lfs*43 0.18 TCGA-BR-4361-01 1 36379873 36379873 G A AGO1 Missense_Mutation p.A611T 0.28 deleterious(0) probably_damaging(0.992) TCGA-BR-4361-01 1 36383300 36383300 G A AGO1 Missense_Mutation p.R712H 0.19 deleterious(0) probably_damaging(0.999) TCGA-BR-4361-01 1 36564002 36564002 C T COL8A2 Missense_Mutation p.G427D 0.27 deleterious(0) unknown(0) TCGA-BR-4361-01 1 36786335 36786335 A T SH3D21 Missense_Mutation p.T691S 0.14 tolerated(0.59) benign(0.175) TCGA-BR-4361-01 1 3697778 3697778 C A LRRC47 Missense_Mutation p.K542N 0.25 tolerated(0.11) benign(0.002) TCGA-BR-4361-01 1 37270528 37270528 G A GRIK3 Intron 0.20 TCGA-BR-4361-01 1 3768907 3768907 C T CEP104 Missense_Mutation p.R22Q 0.20 tolerated(0.07) possibly_damaging(0.593) TCGA-BR-4361-01 1 38006327 38006327 C T SNIP1 Silent p.R119R 0.37 TCGA-BR-4361-01 1 38027281 38027281 T C DNALI1 Missense_Mutation p.F196S 0.21 deleterious(0) probably_damaging(0.996) TCGA-BR-4361-01 1 38185714 38185714 G A EPHA10 Missense_Mutation p.A810V 0.18 tolerated(0.35) benign(0.158) TCGA-BR-4361-01 1 38453481 38453481 T C SF3A3 Missense_Mutation p.R58G 0.31 tolerated(0.41) benign(0.031) TCGA-BR-4361-01 1 39549962 39549962 A T MACF1 Silent p.R24R 0.25 TCGA-BR-4361-01 1 39750009 39750009 T C MACF1 Missense_Mutation p.L352P 0.12 probably_damaging(0.982) TCGA-BR-4361-01 1 39853184 39853184 A C MACF1 Missense_Mutation p.K2828N 0.31 benign(0.038) TCGA-BR-4361-01 1 39880317 39880317 A G KIAA0754 3'UTR 0.25 TCGA-BR-4361-01 1 40149793 40149793 G A HPCAL4 Missense_Mutation p.A65V 0.36 deleterious(0) possibly_damaging(0.907) TCGA-BR-4361-01 1 40235971 40235971 G A OXCT2 Silent p.G319G 0.19 TCGA-BR-4361-01 1 40546147 40546147 G A PPT1 Silent p.A183A 0.30 TCGA-BR-4361-01 1 40981063 40981063 G A EXO5 Missense_Mutation p.D283N 0.05 tolerated(0.1) probably_damaging(0.91) TCGA-BR-4361-01 1 43393358 43393358 G T SLC2A1 Missense_Mutation p.P399Q 0.29 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 1 43647224 43647224 C T WDR65 Silent p.G59G 0.14 TCGA-BR-4361-01 1 43887819 43887819 A G SZT2 Silent p.P564P 0.15 TCGA-BR-4361-01 1 43906258 43906258 G A SZT2 Splice_Site p.X2391_splice 0.27 TCGA-BR-4361-01 1 44054460 44054460 C T PTPRF Silent p.G246G 0.40 TCGA-BR-4361-01 1 45242170 45242170 T C RPS8 Intron 0.30 TCGA-BR-4361-01 1 45244276 45244276 T C RPS8 Silent p.C182C 0.28 TCGA-BR-4361-01 1 45271337 45271337 G A PLK3 Missense_Mutation p.R643H 0.08 tolerated(0.2) unknown(0) TCGA-BR-4361-01 1 45345614 45345614 G A EIF2B3 Missense_Mutation p.A284V 0.44 tolerated(0.08) benign(0.001) TCGA-BR-4361-01 1 45472378 45472378 G A HECTD3 Missense_Mutation p.R571C 0.26 deleterious(0) probably_damaging(0.993) TCGA-BR-4361-01 1 45808127 45808127 G A TOE1 Silent p.V188V 0.28 TCGA-BR-4361-01 1 45976891 45976891 A G PRDX1 3'UTR 0.35 TCGA-BR-4361-01 1 46489481 46489481 C T MAST2 Missense_Mutation p.R537C 0.42 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-BR-4361-01 1 46659443 46659443 G A POMGNT1 Intron 0.33 TCGA-BR-4361-01 1 47155282 47155282 T C EFCAB14 Missense_Mutation p.T258A 0.05 tolerated(0.07) benign(0.012) TCGA-BR-4361-01 1 48701407 48701407 G A SLC5A9 Missense_Mutation p.R408Q 0.35 deleterious(0) probably_damaging(0.972) TCGA-BR-4361-01 1 51425455 51425455 A C FAF1 Missense_Mutation p.I10S 0.22 deleterious(0) benign(0.154) TCGA-BR-4361-01 1 52403029 52403029 G A RAB3B Missense_Mutation p.A95V 0.34 deleterious(0) probably_damaging(0.985) TCGA-BR-4361-01 1 52870494 52870494 A G PRPF38A Missense_Mutation p.I25V 0.28 tolerated(0.15) possibly_damaging(0.78) TCGA-BR-4361-01 1 52992012 52992012 T G ZCCHC11 5'UTR 0.28 TCGA-BR-4361-01 1 55067074 55067074 G A ACOT11 Silent p.R339R 0.24 TCGA-BR-4361-01 1 55075118 55075118 C T FAM151A Silent p.R527R 0.32 TCGA-BR-4361-01 1 55182282 55182282 A G TTC4 Missense_Mutation p.K41E 0.07 deleterious(0.01) benign(0.016) TCGA-BR-4361-01 1 57169936 57169936 C A PRKAA2 Missense_Mutation p.P361T 0.35 tolerated(0.16) benign(0.165) TCGA-BR-4361-01 1 59139300 59139300 C T MYSM1 Missense_Mutation p.R506Q 0.33 deleterious(0.04) probably_damaging(0.986) TCGA-BR-4361-01 1 5925274 5925274 C T NPHP4 Missense_Mutation p.R1235H 0.30 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 1 5927142 5927142 G - NPHP4 Frame_Shift_Del p.P1169Qfs*28 0.31 TCGA-BR-4361-01 1 60309201 60309201 A G HOOK1 Missense_Mutation p.N240S 0.10 tolerated(1) benign(0.012) TCGA-BR-4361-01 1 60331559 60331559 A G HOOK1 Missense_Mutation p.E587G 0.06 deleterious(0) possibly_damaging(0.486) TCGA-BR-4361-01 1 62228824 62228824 G A INADL Silent p.Q54Q 0.08 TCGA-BR-4361-01 1 62728927 62728927 C T KANK4 Silent p.S792S 0.27 TCGA-BR-4361-01 1 62979473 62979473 G A DOCK7 Nonsense_Mutation p.Q1314* 0.28 TCGA-BR-4361-01 1 6341163 6341163 A G ACOT7 Missense_Mutation p.V348A 0.17 tolerated(0.21) benign(0.019) TCGA-BR-4361-01 1 66081718 66081718 A T LEPR Missense_Mutation p.S675C 0.29 deleterious(0) probably_damaging(0.966) TCGA-BR-4361-01 1 67390426 67390426 T - WDR78 Frame_Shift_Del p.K30Rfs*28 0.38 TCGA-BR-4361-01 1 67437384 67437384 T C MIER1 Missense_Mutation p.L324S 0.20 deleterious(0) probably_damaging(0.938) TCGA-BR-4361-01 1 67635241 67635241 A G IL23R Missense_Mutation p.H96R 0.30 tolerated(0.67) benign(0) TCGA-BR-4361-01 1 67861635 67861635 T A IL12RB2 Missense_Mutation p.S818T 0.33 tolerated(0.18) benign(0.005) TCGA-BR-4361-01 1 70385516 70385516 C T LRRC7 Intron 0.56 TCGA-BR-4361-01 1 71532487 71532487 T - ZRANB2 Frame_Shift_Del p.R301Dfs*38 0.24 TCGA-BR-4361-01 1 74671452 74671452 A G FPGT Missense_Mutation p.E574G 0.10 tolerated(0.08) benign(0.008) TCGA-BR-4361-01 1 75596507 75596507 T C LHX8 Intron 0.21 TCGA-BR-4361-01 1 76251915 76251915 C T RABGGTB 5'UTR 0.35 TCGA-BR-4361-01 1 76387916 76387916 T - ASB17 Frame_Shift_Del p.N177Tfs*7 0.30 TCGA-BR-4361-01 1 78050227 78050227 C T ZZZ3 Missense_Mutation p.G540E 0.05 tolerated(0.23) benign(0.037) TCGA-BR-4361-01 1 78097960 78097960 A G ZZZ3 Silent p.C360C 0.29 TCGA-BR-4361-01 1 7863925 7863925 T C PER3 Intron 0.32 TCGA-BR-4361-01 1 8384399 8384399 G A SLC45A1 Missense_Mutation p.A4T 0.31 tolerated_low_confidence(0.19) benign(0) TCGA-BR-4361-01 1 85563328 85563328 C T WDR63 Missense_Mutation p.A447V 0.10 tolerated(0.42) benign(0.001) TCGA-BR-4361-01 1 86591704 86591704 C T COL24A1 Silent p.P105P 0.25 TCGA-BR-4361-01 1 86947904 86947904 A G CLCA1 Missense_Mutation p.T192A 0.43 tolerated(0.08) benign(0.009) TCGA-BR-4361-01 1 87102526 87102526 A G RP4-651E10.4 Intron 0.15 TCGA-BR-4361-01 1 898538 898538 G A KLHL17 Silent p.T364T 0.31 TCGA-BR-4361-01 1 90050223 90050223 C A LRRC8B Missense_Mutation p.P672T 0.11 deleterious(0) probably_damaging(0.999) TCGA-BR-4361-01 1 90478719 90478719 G A ZNF326 Silent p.K283K 0.20 TCGA-BR-4361-01 1 91405022 91405022 A T ZNF644 Missense_Mutation p.I630N 0.24 tolerated(0.11) benign(0.082) TCGA-BR-4361-01 1 91406587 91406587 A G ZNF644 Silent p.F108F 0.12 TCGA-BR-4361-01 1 93649684 93649684 A - CCDC18 Frame_Shift_Del p.K151Sfs*24 0.30 TCGA-BR-4361-01 1 94335492 94335492 C T DNTTIP2 Missense_Mutation p.R729Q 0.22 deleterious(0.01) probably_damaging(0.984) TCGA-BR-4361-01 1 95710198 95710198 A G RWDD3 Missense_Mutation p.M173V 0.08 deleterious(0) possibly_damaging(0.688) TCGA-BR-4361-01 1 9777080 9777080 A G PIK3CD Missense_Mutation p.I282V 0.11 tolerated(0.41) benign(0.021) TCGA-BR-4361-01 1 978991 978991 C T AGRN Silent p.C559C 0.26 TCGA-BR-4361-01 1 9795179 9795179 A G CLSTN1 Missense_Mutation p.M646T 0.04 deleterious(0.04) benign(0.009) TCGA-BR-4361-01 1 99380342 99380342 C A LPPR5 Missense_Mutation p.Q311H 0.20 deleterious(0.02) benign(0.094) TCGA-BR-4361-01 20 13740434 13740434 T A ESF1 Missense_Mutation p.Q578L 0.23 deleterious(0.03) probably_damaging(0.977) TCGA-BR-4361-01 20 13868465 13868465 A G SEL1L2 Missense_Mutation p.L232P 0.08 tolerated(0.43) benign(0.023) TCGA-BR-4361-01 20 13912277 13912277 T C SEL1L2 Silent p.K85K 0.33 TCGA-BR-4361-01 20 1424489 1424489 T C NSFL1C Missense_Mutation p.M342V 0.26 tolerated(0.62) benign(0.249) TCGA-BR-4361-01 20 16721539 16721539 T C SNRPB2 Silent p.I189I 0.08 TCGA-BR-4361-01 20 18476496 18476496 T - RBBP9 Frame_Shift_Del p.N43Tfs*40 0.32 TCGA-BR-4361-01 20 20018070 20018070 C T CRNKL1 Missense_Mutation p.R759Q 0.31 tolerated(0.25) benign(0.011) TCGA-BR-4361-01 20 20180469 20180469 C T C20orf26 Nonsense_Mutation p.R619* 0.34 TCGA-BR-4361-01 20 21307158 21307158 G A XRN2 Missense_Mutation p.M78I 0.12 deleterious(0) probably_damaging(0.992) TCGA-BR-4361-01 20 21687619 21687619 C T PAX1 Missense_Mutation p.A277V 0.42 tolerated(0.07) benign(0.017) TCGA-BR-4361-01 20 23016853 23016853 G A SSTR4 Missense_Mutation p.A245T 0.22 deleterious(0.01) possibly_damaging(0.853) TCGA-BR-4361-01 20 23066469 23066469 C - CD93 Frame_Shift_Del p.E121Rfs*79 0.44 TCGA-BR-4361-01 20 23433295 23433295 T C CST11 Missense_Mutation p.T52A 0.27 tolerated(0.17) benign(0.388) TCGA-BR-4361-01 20 23473656 23473656 C A CST8 Missense_Mutation p.P98H 0.04 tolerated(0.54) benign(0.096) TCGA-BR-4361-01 20 23548916 23548916 A G CST9L Missense_Mutation p.F58L 0.08 deleterious(0) probably_damaging(0.919) TCGA-BR-4361-01 20 2398211 2398211 C T TGM6 Missense_Mutation p.P557L 0.26 deleterious(0.01) benign(0.036) TCGA-BR-4361-01 20 24523957 24523957 A G SYNDIG1 Missense_Mutation p.D75G 0.33 deleterious(0.01) benign(0.242) TCGA-BR-4361-01 20 30421541 30421541 G A MYLK2 Missense_Mutation p.A578T 0.42 deleterious(0) probably_damaging(0.998) TCGA-BR-4361-01 20 30436221 30436221 A G FOXS1 5'Flank 0.28 TCGA-BR-4361-01 20 30681809 30681809 G T HCK Silent p.T412T 0.31 TCGA-BR-4361-01 20 307579 307579 T C SOX12 3'UTR 0.28 TCGA-BR-4361-01 20 3090606 3090606 A G UBOX5 3'UTR 0.56 TCGA-BR-4361-01 20 31021711 31021711 G A ASXL1 Silent p.P570P 0.30 TCGA-BR-4361-01 20 31024634 31024634 T C ASXL1 Silent p.F1373F 0.25 TCGA-BR-4361-01 20 31573693 31573693 C T SUN5 Missense_Mutation p.G249D 0.39 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 20 31624279 31624279 C T BPIFB6 Silent p.T202T 0.34 TCGA-BR-4361-01 20 33577634 33577634 C T MYH7B Missense_Mutation p.A602V 0.38 benign(0.02) TCGA-BR-4361-01 20 33591350 33591350 G - TRPC4AP Frame_Shift_Del p.L707Cfs*44 0.27 TCGA-BR-4361-01 20 33722673 33722673 G A EDEM2 Silent p.T190T 0.29 TCGA-BR-4361-01 20 34060621 34060621 C T CEP250 Missense_Mutation p.R392C 0.32 benign(0.028) TCGA-BR-4361-01 20 34519240 34519240 C T PHF20 Missense_Mutation p.A725V 0.11 deleterious(0.01) possibly_damaging(0.488) TCGA-BR-4361-01 20 34827850 34827850 T C AAR2 Silent p.T20T 0.36 TCGA-BR-4361-01 20 34828400 34828400 A T AAR2 Missense_Mutation p.T204S 0.29 tolerated(0.08) possibly_damaging(0.889) TCGA-BR-4361-01 20 35128652 35128652 A G DLGAP4 Missense_Mutation p.D714G 0.09 deleterious(0.01) probably_damaging(0.911) TCGA-BR-4361-01 20 35242709 35242709 T C SLA2 Missense_Mutation p.S222G 0.05 tolerated(0.06) benign(0.005) TCGA-BR-4361-01 20 35766264 35766264 T C MROH8 Missense_Mutation p.Y560C 0.39 deleterious(0.01) probably_damaging(0.957) TCGA-BR-4361-01 20 36766734 36766734 C T TGM2 Missense_Mutation p.A466T 0.07 tolerated(0.58) benign(0) TCGA-BR-4361-01 20 3677372 3677372 A G SIGLEC1 Silent p.G848G 0.23 TCGA-BR-4361-01 20 36793690 36793691 - G TGM2 5'UTR 0.31 TCGA-BR-4361-01 20 36874452 36874452 G A KIAA1755 Missense_Mutation p.T27I 0.13 deleterious(0.05) benign(0.071) TCGA-BR-4361-01 20 3735139 3735139 G A C20orf27 Missense_Mutation p.A135V 0.36 deleterious(0.01) probably_damaging(0.992) TCGA-BR-4361-01 20 37353288 37353288 C - SLC32A1 5'UTR 0.27 TCGA-BR-4361-01 20 37357012 37357012 C T SLC32A1 Silent p.R436R 0.27 TCGA-BR-4361-01 20 37400389 37400389 G A ACTR5 Missense_Mutation p.R585H 0.28 deleterious(0.04) unknown(0) TCGA-BR-4361-01 20 3842924 3842924 G A MAVS Silent p.T163T 0.15 TCGA-BR-4361-01 20 39788775 39788775 A T PLCG1 Missense_Mutation p.D165V 0.22 deleterious(0.04) possibly_damaging(0.453) TCGA-BR-4361-01 20 39792749 39792749 G A PLCG1 Missense_Mutation p.M375I 0.33 tolerated(0.15) benign(0.309) TCGA-BR-4361-01 20 39832810 39832810 G T ZHX3 Missense_Mutation p.N249K 0.31 tolerated(0.91) benign(0) TCGA-BR-4361-01 20 39832962 39832962 T - ZHX3 Frame_Shift_Del p.I199Ffs*27 0.31 TCGA-BR-4361-01 20 39990930 39990930 T C EMILIN3 Missense_Mutation p.M427V 0.23 tolerated(0.36) benign(0.004) TCGA-BR-4361-01 20 422520 422520 A T TBC1D20 Missense_Mutation p.L169I 0.08 deleterious(0) possibly_damaging(0.871) TCGA-BR-4361-01 20 42310462 42310462 G A MYBL2 Silent p.Q51Q 0.28 TCGA-BR-4361-01 20 42744601 42744601 G A JPH2 Missense_Mutation p.R572C 0.53 deleterious(0) probably_damaging(0.996) TCGA-BR-4361-01 20 43379277 43379278 - C KCNK15 Frame_Shift_Ins p.A268Gfs*94 0.30 TCGA-BR-4361-01 20 43545398 43545398 T C PABPC1L Missense_Mutation p.V130A 0.28 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 20 43882339 43882339 C T SLPI Missense_Mutation p.A41T 0.30 tolerated(0.14) benign(0.158) TCGA-BR-4361-01 20 44433785 44433785 T C DNTTIP1 Missense_Mutation p.W202R 0.05 deleterious(0) probably_damaging(0.948) TCGA-BR-4361-01 20 44433957 44433957 G - DNTTIP1 Frame_Shift_Del p.G227Afs*63 0.24 TCGA-BR-4361-01 20 44469671 44469671 C T SNX21 Missense_Mutation p.R281C 0.35 deleterious(0.03) possibly_damaging(0.871) TCGA-BR-4361-01 20 44576407 44576409 GGA - PCIF1 3'UTR 0.21 TCGA-BR-4361-01 20 44596988 44596988 C T ZNF335 Silent p.V152V 0.23 TCGA-BR-4361-01 20 45130649 45130649 A G ZNF334 Silent p.C443C 0.06 TCGA-BR-4361-01 20 46282157 46282157 G A NCOA3 Missense_Mutation p.C1424Y 0.34 deleterious(0) probably_damaging(0.999) TCGA-BR-4361-01 20 47307598 47307598 C T PREX1 Missense_Mutation p.G358D 0.35 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 20 47864756 47864756 C T ZNFX1 Missense_Mutation p.R1602H 0.28 tolerated(1) benign(0.001) TCGA-BR-4361-01 20 48257180 48257180 C T B4GALT5 Missense_Mutation p.R210Q 0.29 deleterious(0) probably_damaging(0.948) TCGA-BR-4361-01 20 50406825 50406825 G T SALL4 Missense_Mutation p.P733T 0.26 tolerated(0.7) benign(0.036) TCGA-BR-4361-01 20 52199045 52199045 C T ZNF217 Silent p.P107P 0.28 TCGA-BR-4361-01 20 52645321 52645321 G A BCAS1 Silent p.A111A 0.31 TCGA-BR-4361-01 20 5294607 5294607 C T PROKR2 Missense_Mutation p.V137I 0.30 tolerated(0.1) benign(0.216) TCGA-BR-4361-01 20 56735847 56735847 A C C20orf85 Missense_Mutation p.E128A 0.21 deleterious(0.01) benign(0.214) TCGA-BR-4361-01 20 57392726 57392726 G - MIR296 RNA 0.32 TCGA-BR-4361-01 20 57766421 57766421 A G ZNF831 Missense_Mutation p.N116S 0.22 tolerated(0.07) benign(0.146) TCGA-BR-4361-01 20 58456998 58456998 A G SYCP2 Splice_Site p.X886_splice 0.10 TCGA-BR-4361-01 20 58482429 58482429 G A SYCP2 Silent p.Y341Y 0.26 TCGA-BR-4361-01 20 58571021 58571021 G A CDH26 Silent p.G600G 0.14 TCGA-BR-4361-01 20 6022631 6022631 C T LRRN4 Nonsense_Mutation p.W420* 0.24 TCGA-BR-4361-01 20 60747835 60747835 C - SS18L1 Frame_Shift_Del p.Q341Sfs*68 0.29 TCGA-BR-4361-01 20 60903407 60903407 G T LAMA5 Silent p.P1514P 0.21 TCGA-BR-4361-01 20 61512074 61512074 C - DIDO1 Frame_Shift_Del p.G1745Afs*119 0.28 TCGA-BR-4361-01 20 61542719 61542719 C T DIDO1 Silent p.R82R 0.19 TCGA-BR-4361-01 20 61835087 61835087 A G YTHDF1 Missense_Mutation p.S69P 0.07 tolerated(0.27) benign(0.029) TCGA-BR-4361-01 20 62321432 62321432 C - RTEL1 Intron 0.35 TCGA-BR-4361-01 20 62331872 62331872 G A ARFRP1 Missense_Mutation p.R177C 0.28 deleterious(0.03) possibly_damaging(0.67) TCGA-BR-4361-01 20 62708243 62708243 T C RGS19 5'UTR 0.50 TCGA-BR-4361-01 20 7864207 7864207 A G HAO1 3'UTR 0.09 TCGA-BR-4361-01 20 9454009 9454009 G A PLCB4 Silent p.E1152E 0.36 TCGA-BR-4361-01 21 10942922 10942922 C T TPTE Missense_Mutation p.R222Q 0.16 tolerated(0.1) benign(0.013) TCGA-BR-4361-01 21 19775802 19775802 G A TMPRSS15 Silent p.S46S 0.31 TCGA-BR-4361-01 21 26965134 26965134 A G MRPL39 Missense_Mutation p.V304A 0.24 tolerated(0.47) benign(0.008) TCGA-BR-4361-01 21 28306946 28306946 C T ADAMTS5 Missense_Mutation p.G510S 0.42 tolerated(0.25) probably_damaging(0.982) TCGA-BR-4361-01 21 30414846 30414846 T C USP16 Silent p.D392D 0.07 TCGA-BR-4361-01 21 30432959 30432959 T C CCT8 Missense_Mutation p.D491G 0.29 deleterious(0.01) probably_damaging(0.988) TCGA-BR-4361-01 21 30439211 30439211 C T CCT8 Splice_Site p.X188_splice 0.39 TCGA-BR-4361-01 21 30693751 30693751 C T BACH1 Silent p.S50S 0.37 TCGA-BR-4361-01 21 32638371 32638371 A G TIAM1 Silent p.I306I 0.35 TCGA-BR-4361-01 21 33073336 33073336 G - SCAF4 Frame_Shift_Del p.P250Hfs*96 0.23 TCGA-BR-4361-01 21 33954534 33954534 G A AP000275.65 Silent p.H286H 0.31 TCGA-BR-4361-01 21 34399391 34399391 G A OLIG2 Missense_Mutation p.G74D 0.58 deleterious(0.03) possibly_damaging(0.604) TCGA-BR-4361-01 21 34635727 34635727 G A IFNAR2 Nonsense_Mutation p.W490* 0.05 TCGA-BR-4361-01 21 34725143 34725143 C T IFNAR1 Missense_Mutation p.A408V 0.27 tolerated(0.42) possibly_damaging(0.699) TCGA-BR-4361-01 21 34924576 34924576 C T SON Silent p.Y1013Y 0.32 TCGA-BR-4361-01 21 35169909 35169909 G A ITSN1 Missense_Mutation p.A727T 0.11 tolerated(0.64) benign(0.013) TCGA-BR-4361-01 21 36081075 36081076 - A CLIC6 Frame_Shift_Ins p.N565Kfs*8 0.32 TCGA-BR-4361-01 21 37507764 37507764 G A CBR3 Missense_Mutation p.A92T 0.27 deleterious(0) benign(0.368) TCGA-BR-4361-01 21 37650357 37650358 - T DOPEY2 Frame_Shift_Ins p.P1935Sfs*62 0.32 TCGA-BR-4361-01 21 37710133 37710133 G A MORC3 Missense_Mutation p.V117I 0.29 tolerated(0.05) benign(0.415) TCGA-BR-4361-01 21 37759988 37759988 T C CHAF1B Silent p.R73R 0.24 TCGA-BR-4361-01 21 38524243 38524243 A - TTC3 Frame_Shift_Del p.E779Kfs*5 0.32 TCGA-BR-4361-01 21 38529006 38529006 A C TTC3 Missense_Mutation p.K930N 0.33 deleterious(0) probably_damaging(0.986) TCGA-BR-4361-01 21 38845110 38845110 G A DYRK1A Silent p.Q45Q 0.28 TCGA-BR-4361-01 21 39087116 39087116 G A KCNJ6 Missense_Mutation p.A115V 0.31 deleterious(0.02) probably_damaging(0.991) TCGA-BR-4361-01 21 39427042 39427042 A T DSCR4 Nonsense_Mutation p.C88* 0.31 TCGA-BR-4361-01 21 39493375 39493375 C T DSCR4 5'UTR 0.31 TCGA-BR-4361-01 21 39755781 39755781 G A ERG Silent p.S335S 0.29 TCGA-BR-4361-01 21 43160928 43160928 T C RIPK4 3'UTR 0.23 TCGA-BR-4361-01 21 43161435 43161435 G A RIPK4 Missense_Mutation p.P640S 0.12 deleterious(0.01) possibly_damaging(0.849) TCGA-BR-4361-01 21 43342131 43342131 C A C2CD2 Missense_Mutation p.G148C 0.33 deleterious(0.02) possibly_damaging(0.789) TCGA-BR-4361-01 21 43414117 43414117 A T ZBTB21 Missense_Mutation p.C30S 0.32 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 21 43955631 43955631 G A SLC37A1 Silent p.L107L 0.31 TCGA-BR-4361-01 21 44430270 44430270 T C PKNOX1 Missense_Mutation p.F96S 0.06 deleterious(0) probably_damaging(0.994) TCGA-BR-4361-01 21 44840316 44840316 C T SIK1 Missense_Mutation p.R257H 0.50 tolerated(0.14) probably_damaging(0.991) TCGA-BR-4361-01 21 45161602 45161602 A G PDXK Missense_Mutation p.Y66C 0.07 deleterious(0.03) probably_damaging(0.96) TCGA-BR-4361-01 21 45534550 45534550 C T PWP2 Missense_Mutation p.A124V 0.37 tolerated(0.05) possibly_damaging(0.721) TCGA-BR-4361-01 21 45752928 45752928 G A C21orf2 Silent p.L121L 0.40 TCGA-BR-4361-01 21 45953666 45953666 G A TSPEAR Silent p.R148R 0.46 TCGA-BR-4361-01 21 46011724 46011724 G A KRTAP10-6 Silent p.C214C 0.24 TCGA-BR-4361-01 21 46047214 46047214 C T KRTAP10-9 Silent p.C42C 0.26 TCGA-BR-4361-01 21 46313382 46313382 G A ITGB2 Silent p.S387S 0.08 TCGA-BR-4361-01 21 46363606 46363606 C T FAM207A Missense_Mutation p.A46V 0.26 tolerated(0.18) benign(0.187) TCGA-BR-4361-01 21 46591577 46591577 T C ADARB1 Silent p.D2D 0.09 TCGA-BR-4361-01 21 47685905 47685905 A G MCM3AP Missense_Mutation p.Y989H 0.41 deleterious(0) possibly_damaging(0.873) TCGA-BR-4361-01 21 47711299 47711299 T C YBEY Silent p.L88L 0.26 TCGA-BR-4361-01 21 47738113 47738113 G A C21orf58 Missense_Mutation p.A41V 0.07 tolerated_low_confidence(0.17) possibly_damaging(0.682) TCGA-BR-4361-01 21 47961794 47961794 A G DIP2A Missense_Mutation p.Q721R 0.07 tolerated(0.05) possibly_damaging(0.527) TCGA-BR-4361-01 21 9907293 9907293 T C TEKT4P2 RNA 0.10 TCGA-BR-4361-01 22 17264918 17264918 G T XKR3 Missense_Mutation p.A324E 0.06 deleterious(0) probably_damaging(0.96) TCGA-BR-4361-01 22 17662465 17662465 A G CECR1 Missense_Mutation p.Y482H 0.10 deleterious(0) probably_damaging(0.959) TCGA-BR-4361-01 22 17984004 17984004 A G CECR2 Missense_Mutation p.S235G 0.32 deleterious(0) possibly_damaging(0.663) TCGA-BR-4361-01 22 18111420 18111420 C T ATP6V1E1 5'UTR 0.35 TCGA-BR-4361-01 22 18368674 18368674 C T MICAL3 Silent p.A737A 0.31 TCGA-BR-4361-01 22 19119658 19119658 T C TSSK2 Missense_Mutation p.I249T 0.30 deleterious(0) probably_damaging(0.995) TCGA-BR-4361-01 22 19165307 19165307 A G SLC25A1 Missense_Mutation p.L125P 0.45 deleterious(0.02) possibly_damaging(0.467) TCGA-BR-4361-01 22 19341012 19341012 G A HIRA Silent p.S905S 0.22 TCGA-BR-4361-01 22 20100045 20100045 T C TRMT2A 3'UTR 0.44 TCGA-BR-4361-01 22 21101932 21101932 G A PI4KA Missense_Mutation p.A1101V 0.32 deleterious(0.01) probably_damaging(0.96) TCGA-BR-4361-01 22 21348936 21348936 T C LZTR1 Missense_Mutation p.Y569H 0.10 deleterious(0.02) probably_damaging(0.997) TCGA-BR-4361-01 22 21799829 21799829 C T HIC2 Silent p.G215G 0.31 TCGA-BR-4361-01 22 21800560 21800560 C T HIC2 Missense_Mutation p.A459V 0.29 deleterious(0.02) probably_damaging(0.923) TCGA-BR-4361-01 22 22317239 22317239 A G TOP3B Missense_Mutation p.Y411H 0.12 deleterious(0) probably_damaging(0.98) TCGA-BR-4361-01 22 22318552 22318552 T C TOP3B Missense_Mutation p.H360R 0.33 deleterious(0.02) benign(0.285) TCGA-BR-4361-01 22 22682051 22682051 G T IGLV1-50 Missense_Mutation p.G78V 0.28 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-BR-4361-01 22 23437986 23437986 A G GNAZ Missense_Mutation p.K35R 0.28 deleterious(0) probably_damaging(0.99) TCGA-BR-4361-01 22 25024077 25024077 A T GGT1 Missense_Mutation p.T456S 0.25 tolerated(0.57) benign(0.016) TCGA-BR-4361-01 22 25263061 25263061 G A SGSM1 Missense_Mutation p.V310I 0.39 tolerated(0.2) benign(0.391) TCGA-BR-4361-01 22 26165129 26165129 T C MYO18B Missense_Mutation p.C416R 0.33 tolerated_low_confidence(0.66) benign(0.004) TCGA-BR-4361-01 22 26888169 26888169 T C TFIP11 Missense_Mutation p.D775G 0.29 deleterious(0) possibly_damaging(0.84) TCGA-BR-4361-01 22 28196286 28196286 C - MN1 Frame_Shift_Del p.L83Cfs*140 0.22 TCGA-BR-4361-01 22 29083889 29083889 A G CHEK2 Missense_Mutation p.L586S 0.30 deleterious_low_confidence(0) benign(0.022) TCGA-BR-4361-01 22 29083895 29083895 G C CHEK2 Missense_Mutation p.A584G 0.25 deleterious_low_confidence(0.02) possibly_damaging(0.546) TCGA-BR-4361-01 22 29182081 29182081 C T CCDC117 Missense_Mutation p.R203C 0.22 deleterious(0.01) probably_damaging(0.942) TCGA-BR-4361-01 22 29837922 29837922 C T RFPL1 Silent p.N255N 0.31 TCGA-BR-4361-01 22 30864625 30864625 A G SEC14L3 Missense_Mutation p.V98A 0.08 deleterious(0.01) possibly_damaging(0.865) TCGA-BR-4361-01 22 31533758 31533758 G T PLA2G3 Missense_Mutation p.S335Y 0.16 deleterious(0.01) possibly_damaging(0.51) TCGA-BR-4361-01 22 31600684 31600684 G A RNF185 3'UTR 0.21 TCGA-BR-4361-01 22 31663869 31663869 A G LIMK2 Silent p.T391T 0.22 TCGA-BR-4361-01 22 31737606 31737606 A G PATZ1 Intron 0.14 TCGA-BR-4361-01 22 32108285 32108285 G A PRR14L Missense_Mutation p.T1847I 0.12 deleterious(0.02) possibly_damaging(0.801) TCGA-BR-4361-01 22 37209708 37209708 C T PVALB Missense_Mutation p.G96S 0.24 deleterious(0) probably_damaging(0.94) TCGA-BR-4361-01 22 37603130 37603130 C T SSTR3 Missense_Mutation p.R238H 0.28 deleterious(0.04) probably_damaging(0.996) TCGA-BR-4361-01 22 37769104 37769104 G - ELFN2 3'UTR 0.28 TCGA-BR-4361-01 22 38051301 38051301 G A SH3BP1 Silent p.R572R 0.20 TCGA-BR-4361-01 22 38121772 38121772 C - TRIOBP Frame_Shift_Del p.R1072Gfs*141 0.43 TCGA-BR-4361-01 22 38481311 38481311 C T BAIAP2L2 Missense_Mutation p.R529H 0.28 deleterious(0) probably_damaging(0.977) TCGA-BR-4361-01 22 38699188 38699188 G - CSNK1E Frame_Shift_Del p.Q48Sfs*11 0.42 TCGA-BR-4361-01 22 39123224 39123224 C T GTPBP1 Missense_Mutation p.R470C 0.31 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 22 39421135 39421135 C T APOBEC3D Nonsense_Mutation p.R91* 0.27 TCGA-BR-4361-01 22 39822886 39822886 A G TAB1 Missense_Mutation p.Y367C 0.07 tolerated(0.08) probably_damaging(0.948) TCGA-BR-4361-01 22 39883966 39883966 C T MGAT3 Missense_Mutation p.P205L 0.47 deleterious(0.02) possibly_damaging(0.55) TCGA-BR-4361-01 22 40718965 40718965 C T TNRC6B Missense_Mutation p.A1741V 0.38 deleterious(0.01) benign(0.148) TCGA-BR-4361-01 22 40827407 40827407 A G MKL1 Splice_Site p.X47_splice 0.28 TCGA-BR-4361-01 22 41077604 41077604 G A MCHR1 Missense_Mutation p.R314H 0.21 deleterious(0.03) possibly_damaging(0.897) TCGA-BR-4361-01 22 41523566 41523566 C T EP300 Missense_Mutation p.H328Y 0.34 unknown(0) TCGA-BR-4361-01 22 41621074 41621074 A G L3MBTL2 Missense_Mutation p.K452R 0.05 deleterious(0.02) possibly_damaging(0.517) TCGA-BR-4361-01 22 42610373 42610373 C T TCF20 Silent p.Q313Q 0.33 TCGA-BR-4361-01 22 43634937 43634937 C A SCUBE1 Missense_Mutation p.G251C 0.21 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 22 45607889 45607889 A G KIAA0930 Missense_Mutation p.V60A 0.09 deleterious(0) probably_damaging(0.988) TCGA-BR-4361-01 22 45607914 45607914 G - KIAA0930 Frame_Shift_Del p.R52Gfs*60 0.27 TCGA-BR-4361-01 22 45723730 45723730 G A FAM118A Missense_Mutation p.G103D 0.31 tolerated(0.06) probably_damaging(0.984) TCGA-BR-4361-01 22 45768124 45768124 T A SMC1B Missense_Mutation p.T703S 0.08 tolerated(1) benign(0.012) TCGA-BR-4361-01 22 46658199 46658199 G A PKDREJ Missense_Mutation p.L341F 0.06 tolerated(0.05) possibly_damaging(0.863) TCGA-BR-4361-01 22 46860228 46860228 C T CELSR1 Missense_Mutation p.V1187I 0.29 tolerated(0.11) benign(0.34) TCGA-BR-4361-01 22 50897976 50897976 G A SBF1 Missense_Mutation p.A1204V 0.42 deleterious(0) probably_damaging(0.963) TCGA-BR-4361-01 22 50900712 50900712 C T SBF1 Missense_Mutation p.S773N 0.22 tolerated(0.16) benign(0.39) TCGA-BR-4361-01 22 50957834 50957834 A G NCAPH2 Intron 0.47 TCGA-BR-4361-01 22 51044095 51044095 G - MAPK8IP2 Frame_Shift_Del p.E650Sfs*65 0.36 TCGA-BR-4361-01 22 51160716 51160716 G A SHANK3 Silent p.G1501G 0.07 TCGA-BR-4361-01 2 102781763 102781763 A G IL1R1 Missense_Mutation p.K162R 0.07 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 2 102782603 102782603 C T IL1R1 Missense_Mutation p.H173Y 0.36 tolerated(0.88) benign(0.001) TCGA-BR-4361-01 2 103334978 103334978 G - MFSD9 Frame_Shift_Del p.S443Afs*6 0.36 TCGA-BR-4361-01 2 105472990 105472990 C T POU3F3 Missense_Mutation p.A341V 0.30 deleterious(0) possibly_damaging(0.474) TCGA-BR-4361-01 2 10560015 10560015 C T HPCAL1 Silent p.T44T 0.31 TCGA-BR-4361-01 2 10560033 10560033 G A HPCAL1 Silent p.K50K 0.29 TCGA-BR-4361-01 2 105716151 105716151 C T MRPS9 Missense_Mutation p.R375C 0.38 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 2 107041513 107041513 A - RGPD3 Frame_Shift_Del p.F970Lfs*72 0.23 TCGA-BR-4361-01 2 109292351 109292351 A G LIMS1 Missense_Mutation p.D233G 0.07 deleterious(0.02) possibly_damaging(0.882) TCGA-BR-4361-01 2 109382784 109382784 A G RANBP2 Missense_Mutation p.Q1930R 0.19 tolerated(0.06) benign(0.091) TCGA-BR-4361-01 2 109382791 109382791 T G RANBP2 Missense_Mutation p.N1932K 0.18 tolerated(0.64) benign(0.002) TCGA-BR-4361-01 2 109388156 109388156 G T RANBP2 Splice_Site p.X2617_splice 0.32 TCGA-BR-4361-01 2 110926098 110926098 T - NPHP1 Frame_Shift_Del p.K185Nfs*7 0.27 TCGA-BR-4361-01 2 111413438 111413438 C T BUB1 Missense_Mutation p.R585H 0.25 tolerated(0.17) benign(0.106) TCGA-BR-4361-01 2 111881525 111881525 C T BCL2L11 Missense_Mutation p.A68V 0.24 tolerated(0.53) benign(0.118) TCGA-BR-4361-01 2 112636490 112636492 TCA - ANAPC1 In_Frame_Del p.D90del 0.29 TCGA-BR-4361-01 2 11318056 11318056 T C PQLC3 3'UTR 0.40 TCGA-BR-4361-01 2 11355500 11355500 T - ROCK2 Frame_Shift_Del p.R546Efs*12 0.13 TCGA-BR-4361-01 2 120677773 120677773 T - PTPN4 Frame_Shift_Del p.F321Lfs*7 0.28 TCGA-BR-4361-01 2 128249592 128249592 G T IWS1 Missense_Mutation p.P668T 0.20 deleterious(0) probably_damaging(0.998) TCGA-BR-4361-01 2 128409237 128409237 A - GPR17 Frame_Shift_Del p.N338Tfs*24 0.21 TCGA-BR-4361-01 2 128750826 128750826 T C SAP130 Missense_Mutation p.Y497C 0.36 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-BR-4361-01 2 130897491 130897491 A G CCDC74B Missense_Mutation p.V327A 0.11 deleterious(0.02) probably_damaging(0.948) TCGA-BR-4361-01 2 130912735 130912735 C T SMPD4 Missense_Mutation p.A502T 0.09 deleterious(0) probably_damaging(0.913) TCGA-BR-4361-01 2 130931134 130931134 G A SMPD4 Silent p.R113R 0.17 TCGA-BR-4361-01 2 131130808 131130808 A G PTPN18 3'UTR 0.32 TCGA-BR-4361-01 2 132237972 132237972 T C TUBA3D Missense_Mutation p.S236P 0.31 deleterious_low_confidence(0) possibly_damaging(0.899) TCGA-BR-4361-01 2 132290615 132290615 T C CCDC74A Missense_Mutation p.V327A 0.13 deleterious(0.02) probably_damaging(0.961) TCGA-BR-4361-01 2 136530012 136530012 G A UBXN4 Missense_Mutation p.R282H 0.32 deleterious(0.02) benign(0.088) TCGA-BR-4361-01 2 141143483 141143483 T C LRP1B Missense_Mutation p.N3504D 0.06 possibly_damaging(0.621) TCGA-BR-4361-01 2 141806579 141806579 C G LRP1B Missense_Mutation p.E589Q 0.29 benign(0.116) TCGA-BR-4361-01 2 143676273 143676273 G A KYNU Missense_Mutation p.E89K 0.21 tolerated(0.16) benign(0.261) TCGA-BR-4361-01 2 143718341 143718341 T C KYNU Splice_Site p.X243_splice 0.08 TCGA-BR-4361-01 2 143913190 143913190 T C ARHGAP15 Missense_Mutation p.M44T 0.40 deleterious(0) benign(0.33) TCGA-BR-4361-01 2 145187336 145187336 C A ZEB2 Nonsense_Mutation p.E111* 0.17 TCGA-BR-4361-01 2 1480977 1480977 G A TPO Silent p.P313P 0.42 TCGA-BR-4361-01 2 149853788 149853788 C T KIF5C Silent p.H678H 0.31 TCGA-BR-4361-01 2 152127144 152127144 T - NMI 3'UTR 0.27 TCGA-BR-4361-01 2 152273138 152273138 T C RIF1 Missense_Mutation p.V115A 0.05 deleterious(0.04) benign(0.196) TCGA-BR-4361-01 2 152982811 152982811 C G STAM2 Missense_Mutation p.V370L 0.27 tolerated(0.39) benign(0.001) TCGA-BR-4361-01 2 155555563 155555563 C T KCNJ3 Silent p.T92T 0.26 TCGA-BR-4361-01 2 15743351 15743351 G A DDX1 Missense_Mutation p.G143R 0.08 deleterious(0) probably_damaging(0.999) TCGA-BR-4361-01 2 158978111 158978111 T C UPP2 Silent p.C272C 0.06 TCGA-BR-4361-01 2 158978125 158978125 A T UPP2 Missense_Mutation p.Y277F 0.13 deleterious(0.02) probably_damaging(0.946) TCGA-BR-4361-01 2 159481713 159481713 C T PKP4 Silent p.T309T 0.34 TCGA-BR-4361-01 2 159954333 159954334 - A TANC1 Frame_Shift_Ins p.S85Ifs*35 0.36 TCGA-BR-4361-01 2 160028760 160028760 G A TANC1 Missense_Mutation p.A494T 0.11 deleterious(0.01) benign(0.22) TCGA-BR-4361-01 2 160289437 160289437 T C BAZ2B Silent p.T577T 0.04 TCGA-BR-4361-01 2 164466663 164466663 A G FIGN Missense_Mutation p.L560S 0.09 tolerated(0.06) possibly_damaging(0.854) TCGA-BR-4361-01 2 164467532 164467532 C T FIGN Silent p.P270P 0.24 TCGA-BR-4361-01 2 165364963 165364963 A G GRB14 Splice_Site p.X341_splice 0.29 TCGA-BR-4361-01 2 165551885 165551885 C T COBLL1 Missense_Mutation p.V711I 0.27 tolerated(1) benign(0) TCGA-BR-4361-01 2 166226695 166226695 T C SCN2A Silent p.A1245A 0.37 TCGA-BR-4361-01 2 166243472 166243472 T C SCN2A Missense_Mutation p.F1590L 0.08 deleterious(0.01) possibly_damaging(0.511) TCGA-BR-4361-01 2 166747086 166747086 C T TTC21B Missense_Mutation p.G1056S 0.38 deleterious(0.04) possibly_damaging(0.864) TCGA-BR-4361-01 2 166847923 166847925 AAG - SCN1A In_Frame_Del p.L1954del 0.28 TCGA-BR-4361-01 2 167083198 167083198 T C SCN9A Missense_Mutation p.K1415R 0.38 tolerated(0.2) benign(0.002) TCGA-BR-4361-01 2 16742786 16742786 T C FAM49A Missense_Mutation p.I151V 0.24 tolerated(0.08) probably_damaging(0.923) TCGA-BR-4361-01 2 167760302 167760302 C T XIRP2 Missense_Mutation p.R104W 0.28 probably_damaging(1) TCGA-BR-4361-01 2 168101702 168101702 T G XIRP2 Missense_Mutation p.I1267R 0.32 probably_damaging(0.979) TCGA-BR-4361-01 2 169103919 169103919 C T STK39 Silent p.V9V 0.25 TCGA-BR-4361-01 2 171914690 171914690 G A TLK1 Missense_Mutation p.R142C 0.30 deleterious(0) probably_damaging(0.915) TCGA-BR-4361-01 2 172398264 172398264 C T CYBRD1 Silent p.S121S 0.30 TCGA-BR-4361-01 2 174820514 174820514 A G SP3 Silent p.G242G 0.27 TCGA-BR-4361-01 2 175618330 175618330 T C CHRNA1 Missense_Mutation p.M252V 0.30 deleterious(0.02) benign(0.11) TCGA-BR-4361-01 2 175979287 175979287 T C ATF2 Intron 0.28 TCGA-BR-4361-01 2 176995417 176995417 C - HOXD8 Frame_Shift_Del p.P110Lfs*67 0.43 TCGA-BR-4361-01 2 177034214 177034214 G A HOXD3 Silent p.P124P 0.21 TCGA-BR-4361-01 2 178388535 178388535 T C AGPS Splice_Site p.X619_splice 0.33 TCGA-BR-4361-01 2 179446774 179446774 T C TTN Missense_Mutation p.K22108E 0.04 TCGA-BR-4361-01 2 179451486 179451486 T C TTN Missense_Mutation p.N21381S 0.10 TCGA-BR-4361-01 2 179495802 179495802 T C TTN Missense_Mutation p.D14658G 0.33 TCGA-BR-4361-01 2 179529600 179529600 T - TTN Frame_Shift_Del p.R12033Efs*125 0.33 TCGA-BR-4361-01 2 179636101 179636101 T A TTN Missense_Mutation p.E2651D 0.08 TCGA-BR-4361-01 2 180815357 180815357 C T CWC22 Silent p.A674A 0.24 TCGA-BR-4361-01 2 182468700 182468700 A G CERKL Silent p.G115G 0.10 TCGA-BR-4361-01 2 183731239 183731239 G A FRZB Silent p.A14A 0.20 TCGA-BR-4361-01 2 185801510 185801510 G A ZNF804A Missense_Mutation p.D463N 0.35 deleterious(0) probably_damaging(0.984) TCGA-BR-4361-01 2 185802505 185802505 A T ZNF804A Missense_Mutation p.E794D 0.19 deleterious(0.03) probably_damaging(0.935) TCGA-BR-4361-01 2 186671181 186671181 T C FSIP2 Silent p.N5805N 0.31 TCGA-BR-4361-01 2 186678388 186678388 T C FSIP2 Silent p.I6737I 0.36 TCGA-BR-4361-01 2 1890312 1890312 T C MYT1L Missense_Mutation p.K902E 0.30 deleterious(0) possibly_damaging(0.64) TCGA-BR-4361-01 2 189849518 189849518 T A COL3A1 Missense_Mutation p.S38T 0.05 unknown(0) TCGA-BR-4361-01 2 189904010 189904010 C T COL5A2 Missense_Mutation p.A1305T 0.36 unknown(0) TCGA-BR-4361-01 2 191301720 191301720 A T MFSD6 Missense_Mutation p.D322V 0.27 deleterious(0) probably_damaging(0.92) TCGA-BR-4361-01 2 191797646 191797646 T - GLS Intron 0.27 TCGA-BR-4361-01 2 1926086 1926086 G A MYT1L Silent p.S485S 0.36 TCGA-BR-4361-01 2 1926367 1926367 G - MYT1L Frame_Shift_Del p.R392Gfs*24 0.23 TCGA-BR-4361-01 2 196825456 196825456 A G DNAH7 Silent p.L807L 0.30 TCGA-BR-4361-01 2 198950524 198950524 T C PLCL1 Silent p.C761C 0.06 TCGA-BR-4361-01 2 200245100 200245100 C T SATB2 Missense_Mutation p.C195Y 0.21 deleterious(0) probably_damaging(0.99) TCGA-BR-4361-01 2 202337729 202337729 C T STRADB Missense_Mutation p.T82I 0.35 deleterious(0.01) probably_damaging(0.96) TCGA-BR-4361-01 2 202606542 202606542 G A ALS2 Nonsense_Mutation p.Q736* 0.34 TCGA-BR-4361-01 2 202712162 202712162 T C CDK15 Missense_Mutation p.S304P 0.09 deleterious(0.04) benign(0.013) TCGA-BR-4361-01 2 204001465 204001465 A G NBEAL1 Silent p.E1482E 0.31 TCGA-BR-4361-01 2 204058623 204058623 T - NBEAL1 Frame_Shift_Del p.F2315Lfs*2 0.26 TCGA-BR-4361-01 2 204292052 204292052 T C ABI2 Missense_Mutation p.S469P 0.30 tolerated(0.22) benign(0.049) TCGA-BR-4361-01 2 20453706 20453706 G T PUM2 Nonsense_Mutation p.C980* 0.34 TCGA-BR-4361-01 2 206480189 206480189 C T PARD3B Silent p.P1028P 0.29 TCGA-BR-4361-01 2 206641233 206641233 C T NRP2 Intron 0.29 TCGA-BR-4361-01 2 206927766 206927766 T G INO80D 5'UTR 0.16 TCGA-BR-4361-01 2 20845123 20845123 G A HS1BP3 Missense_Mutation p.P59S 0.33 tolerated(0.05) possibly_damaging(0.896) TCGA-BR-4361-01 2 208986447 208986447 C - CRYGD Frame_Shift_Del p.A159Pfs*9 0.35 TCGA-BR-4361-01 2 210559555 210559555 G T MAP2 Missense_Mutation p.E887D 0.33 deleterious_low_confidence(0.02) benign(0.308) TCGA-BR-4361-01 2 211018861 211018861 A G KANSL1L Missense_Mutation p.V149A 0.06 tolerated(0.06) benign(0.007) TCGA-BR-4361-01 2 211469862 211469862 T C CPS1 Missense_Mutation p.S631P 0.07 deleterious(0) probably_damaging(0.964) TCGA-BR-4361-01 2 211471538 211471538 C T CPS1 Missense_Mutation p.R695C 0.33 deleterious(0) probably_damaging(0.983) TCGA-BR-4361-01 2 214878730 214878730 T - SPAG16 Frame_Shift_Del p.P488Lfs*47 0.24 TCGA-BR-4361-01 2 215013877 215013877 C T SPAG16 Missense_Mutation p.A536V 0.08 tolerated(0.09) possibly_damaging(0.658) TCGA-BR-4361-01 2 215632335 215632335 A G BARD1 Missense_Mutation p.L480S 0.38 deleterious(0.03) probably_damaging(1) TCGA-BR-4361-01 2 215838763 215838763 C T ABCA12 Silent p.Q1824Q 0.30 TCGA-BR-4361-01 2 216257711 216257711 C T FN1 Missense_Mutation p.V1338I 0.25 tolerated(0.17) probably_damaging(0.988) TCGA-BR-4361-01 2 216271937 216271937 A G FN1 Missense_Mutation p.Y876H 0.10 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 2 216274388 216274388 C T FN1 Missense_Mutation p.A733T 0.30 tolerated(0.08) possibly_damaging(0.598) TCGA-BR-4361-01 2 216299477 216299477 C T FN1 Silent p.A73A 0.31 TCGA-BR-4361-01 2 216903917 216903917 C T PECR 3'UTR 0.31 TCGA-BR-4361-01 2 217364716 217364716 C A RPL37A Silent p.S59S 0.19 TCGA-BR-4361-01 2 219529962 219529962 G A RNF25 Silent p.V194V 0.27 TCGA-BR-4361-01 2 219616528 219616528 A C TTLL4 Missense_Mutation p.Q992P 0.41 deleterious(0.01) benign(0.064) TCGA-BR-4361-01 2 219824814 219824814 G A CDK5R2 Missense_Mutation p.G91D 0.18 tolerated(0.4) probably_damaging(0.982) TCGA-BR-4361-01 2 219856877 219856877 T C CRYBA2 Missense_Mutation p.S84G 0.29 deleterious(0.01) possibly_damaging(0.577) TCGA-BR-4361-01 2 220034124 220034124 G A SLC23A3 Missense_Mutation p.P109S 0.32 deleterious(0) probably_damaging(0.999) TCGA-BR-4361-01 2 220037412 220037413 - G CNPPD1 Frame_Shift_Ins p.W377Lfs*50 0.26 TCGA-BR-4361-01 2 220088662 220088662 C T ATG9A Missense_Mutation p.D450N 0.33 tolerated(0.05) benign(0.089) TCGA-BR-4361-01 2 220149365 220149365 G A DNAJB2 Missense_Mutation p.D211N 0.31 deleterious(0.02) probably_damaging(0.998) TCGA-BR-4361-01 2 220312963 220312963 C T SPEG Silent p.S361S 0.29 TCGA-BR-4361-01 2 220332065 220332065 G A SPEG Missense_Mutation p.M1017I 0.27 probably_damaging(0.997) TCGA-BR-4361-01 2 220336948 220336948 G A SPEG Splice_Site p.X1279_splice 0.07 TCGA-BR-4361-01 2 220344792 220344792 T C SPEG Missense_Mutation p.Y1758H 0.09 benign(0.37) TCGA-BR-4361-01 2 220353309 220353309 C T SPEG Missense_Mutation p.R2650W 0.33 benign(0.003) TCGA-BR-4361-01 2 220354353 220354353 G A SPEG Silent p.E2871E 0.08 TCGA-BR-4361-01 2 220499144 220499144 T C SLC4A3 Missense_Mutation p.C549R 0.30 tolerated(0.19) benign(0.355) TCGA-BR-4361-01 2 225659763 225659763 T C DOCK10 Missense_Mutation p.T1663A 0.14 deleterious(0) benign(0.309) TCGA-BR-4361-01 2 226378131 226378131 G A NYAP2 Missense_Mutation p.G89D 0.22 deleterious(0.02) benign(0.098) TCGA-BR-4361-01 2 226447400 226447400 A G NYAP2 Missense_Mutation p.T423A 0.21 tolerated(0.36) benign(0.028) TCGA-BR-4361-01 2 227663319 227663319 A G IRS1 Missense_Mutation p.Y46H 0.06 deleterious(0) probably_damaging(0.999) TCGA-BR-4361-01 2 230672544 230672544 A - TRIP12 Frame_Shift_Del p.F744Lfs*7 0.19 TCGA-BR-4361-01 2 231042294 231042294 T C SP110 Missense_Mutation p.N517S 0.05 tolerated(1) possibly_damaging(0.486) TCGA-BR-4361-01 2 231112772 231112772 G C SP140 Missense_Mutation p.R295T 0.33 tolerated(0.44) benign(0.025) TCGA-BR-4361-01 2 231380484 231380484 T - SP100 Intron 0.29 TCGA-BR-4361-01 2 231774792 231774792 G A GPR55 Missense_Mutation p.R296C 0.35 deleterious(0.01) probably_damaging(0.98) TCGA-BR-4361-01 2 231774894 231774894 C A GPR55 Missense_Mutation p.A262S 0.35 tolerated(0.53) benign(0.023) TCGA-BR-4361-01 2 233347857 233347857 C T ECEL1 Silent p.P513P 0.21 TCGA-BR-4361-01 2 233431929 233431929 G A EIF4E2 Intron 0.28 TCGA-BR-4361-01 2 234627976 234627977 - T UGT1A4 Frame_Shift_Ins p.W173Lfs*7 0.28 TCGA-BR-4361-01 2 234652351 234652351 G A UGT1A10 Intron 0.30 TCGA-BR-4361-01 2 236877258 236877258 A G AGAP1 Missense_Mutation p.T546A 0.10 tolerated(1) benign(0.036) TCGA-BR-4361-01 2 237076119 237076119 C T GBX2 Missense_Mutation p.A166T 0.46 tolerated(0.58) benign(0.002) TCGA-BR-4361-01 2 237405943 237405943 G - IQCA1 Frame_Shift_Del p.Q67Rfs*5 0.25 TCGA-BR-4361-01 2 238249551 238249551 C T COL6A3 Missense_Mutation p.A2670T 0.24 unknown(0) TCGA-BR-4361-01 2 238285437 238285437 C T COL6A3 Silent p.V1016V 0.26 TCGA-BR-4361-01 2 238483624 238483624 G - RAB17 3'UTR 0.38 TCGA-BR-4361-01 2 238725990 238725990 T - RBM44 Frame_Shift_Del p.F146Lfs*53 0.48 TCGA-BR-4361-01 2 239162209 239162209 C T PER2 Missense_Mutation p.A819T 0.22 tolerated(0.84) benign(0.005) TCGA-BR-4361-01 2 239976501 239976501 T C HDAC4 Missense_Mutation p.Q1006R 0.05 tolerated(0.32) benign(0.002) TCGA-BR-4361-01 2 240002823 240002823 G - HDAC4 Frame_Shift_Del p.M902Wfs*55 0.55 TCGA-BR-4361-01 2 240969231 240969231 T A OR6B2 Missense_Mutation p.I206F 0.19 deleterious(0.02) benign(0.363) TCGA-BR-4361-01 2 241078631 241078631 G - OTOS Frame_Shift_Del p.L76Wfs*? 0.11 TCGA-BR-4361-01 2 242046073 242046073 C T PASK Missense_Mutation p.A1301T 0.32 tolerated_low_confidence(0.39) benign(0.037) TCGA-BR-4361-01 2 242178074 242178075 CT - HDLBP Frame_Shift_Del p.E913Gfs*25 0.30 TCGA-BR-4361-01 2 242186183 242186183 G A HDLBP Missense_Mutation p.S645F 0.25 deleterious(0.01) benign(0.396) TCGA-BR-4361-01 2 242524084 242524084 C A THAP4 Missense_Mutation p.M557I 0.24 deleterious(0.02) probably_damaging(0.96) TCGA-BR-4361-01 2 242573292 242573292 C - THAP4 Frame_Shift_Del p.A94Lfs*19 0.37 TCGA-BR-4361-01 2 242794422 242794422 C T PDCD1 Missense_Mutation p.V174M 0.19 tolerated(0.32) possibly_damaging(0.469) TCGA-BR-4361-01 2 242815464 242815464 C T CXXC11 3'UTR 0.29 TCGA-BR-4361-01 2 24929467 24929467 C A NCOA1 Missense_Mutation p.D376E 0.25 tolerated(0.2) benign(0.055) TCGA-BR-4361-01 2 26203675 26203675 A G KIF3C Missense_Mutation p.V371A 0.29 benign(0.326) TCGA-BR-4361-01 2 272130 272130 A G ACP1 Intron 0.07 TCGA-BR-4361-01 2 27290410 27290410 G A AGBL5 Missense_Mutation p.R713H 0.31 tolerated_low_confidence(0.07) benign(0.004) TCGA-BR-4361-01 2 27479689 27479689 T C SLC30A3 Missense_Mutation p.T284A 0.35 deleterious(0) benign(0.237) TCGA-BR-4361-01 2 27599213 27599213 C T SNX17 Missense_Mutation p.R406C 0.30 deleterious(0) possibly_damaging(0.768) TCGA-BR-4361-01 2 27601437 27601437 G - ZNF513 Frame_Shift_Del p.T233Lfs*42 0.43 TCGA-BR-4361-01 2 28050434 28050434 C T RBKS Silent p.T265T 0.30 TCGA-BR-4361-01 2 28801025 28801025 G A PLB1 Silent p.T495T 0.47 TCGA-BR-4361-01 2 29063182 29063182 A - SPDYA Frame_Shift_Del p.R235Efs*21 0.32 TCGA-BR-4361-01 2 29293622 29293622 G A C2orf71 Missense_Mutation p.P1169L 0.10 tolerated(0.05) possibly_damaging(0.656) TCGA-BR-4361-01 2 29294162 29294162 G - C2orf71 Frame_Shift_Del p.P989Lfs*46 0.35 TCGA-BR-4361-01 2 29296327 29296327 C T C2orf71 Silent p.L267L 0.34 TCGA-BR-4361-01 2 30748623 30748623 T C LCLAT1 Splice_Site p.X93_splice 0.29 TCGA-BR-4361-01 2 31588901 31588901 A G XDH Silent p.F799F 0.27 TCGA-BR-4361-01 2 3197842 3197842 T C TSSC1 Missense_Mutation p.D250G 0.07 deleterious(0.01) probably_damaging(0.989) TCGA-BR-4361-01 2 32449533 32449533 A G NLRC4 3'UTR 0.33 TCGA-BR-4361-01 2 32449783 32449783 G A NLRC4 Missense_Mutation p.A945V 0.24 deleterious(0.01) benign(0.403) TCGA-BR-4361-01 2 33813583 33813583 T C FAM98A Missense_Mutation p.Y114C 0.30 deleterious(0) probably_damaging(0.987) TCGA-BR-4361-01 2 37347136 37347136 A G EIF2AK2 Missense_Mutation p.I405T 0.10 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 2 40656492 40656492 A G SLC8A1 Missense_Mutation p.L310P 0.27 tolerated(0.22) possibly_damaging(0.883) TCGA-BR-4361-01 2 42488302 42488302 A - EML4 Frame_Shift_Del p.E130Rfs*43 0.29 TCGA-BR-4361-01 2 43808916 43808916 C T THADA Missense_Mutation p.G229R 0.06 deleterious(0.03) benign(0.064) TCGA-BR-4361-01 2 43813540 43813540 C A THADA Missense_Mutation p.R178I 0.36 deleterious(0) benign(0.316) TCGA-BR-4361-01 2 44428693 44428693 A G PPM1B Missense_Mutation p.N119D 0.10 tolerated(0.52) benign(0.003) TCGA-BR-4361-01 2 44428717 44428717 A G PPM1B Missense_Mutation p.M127V 0.37 tolerated(0.31) benign(0) TCGA-BR-4361-01 2 44436356 44436356 G A PPM1B Missense_Mutation p.R285Q 0.27 tolerated(0.06) possibly_damaging(0.823) TCGA-BR-4361-01 2 45169356 45169356 C T SIX3 Missense_Mutation p.A38V 0.36 tolerated_low_confidence(0.22) benign(0.001) TCGA-BR-4361-01 2 46378314 46378314 C T PRKCE Silent p.D622D 0.26 TCGA-BR-4361-01 2 46574037 46574037 A G EPAS1 Missense_Mutation p.K18E 0.33 deleterious(0.01) probably_damaging(0.997) TCGA-BR-4361-01 2 48026471 48026471 T C MSH6 Missense_Mutation p.V450A 0.36 tolerated(0.38) possibly_damaging(0.454) TCGA-BR-4361-01 2 48026560 48026560 G C MSH6 Missense_Mutation p.V480L 0.40 deleterious(0) probably_damaging(0.996) TCGA-BR-4361-01 2 48809378 48809378 G A STON1-GTF2A1L Missense_Mutation p.V536I 0.31 tolerated(0.13) benign(0.09) TCGA-BR-4361-01 2 49190590 49190590 A G FSHR Missense_Mutation p.V457A 0.42 deleterious(0) probably_damaging(0.996) TCGA-BR-4361-01 2 54115035 54115035 G A PSME4 Missense_Mutation p.L1494F 0.36 deleterious(0.01) benign(0.213) TCGA-BR-4361-01 2 54362601 54362601 A G ACYP2 Missense_Mutation p.R24G 0.09 deleterious(0) benign(0.333) TCGA-BR-4361-01 2 55464533 55464533 T C MTIF2 Silent p.V634V 0.18 TCGA-BR-4361-01 2 55481808 55481808 T - MTIF2 Frame_Shift_Del p.N162Ifs*5 0.24 TCGA-BR-4361-01 2 55535973 55535973 G A CCDC88A Silent p.G1452G 0.35 TCGA-BR-4361-01 2 55570930 55570930 T - CCDC88A Splice_Site p.X397_splice 0.37 TCGA-BR-4361-01 2 55589575 55589575 T C CCDC88A Missense_Mutation p.N166D 0.37 deleterious(0.01) benign(0.272) TCGA-BR-4361-01 2 5833227 5833227 A G SOX11 Missense_Mutation p.K125R 0.09 tolerated(0.14) probably_damaging(0.956) TCGA-BR-4361-01 2 60688807 60688807 A G BCL11A Missense_Mutation p.C414R 0.26 deleterious(0) possibly_damaging(0.712) TCGA-BR-4361-01 2 61020810 61020810 A G PAPOLG Silent p.V576V 0.07 TCGA-BR-4361-01 2 61455842 61455842 G A USP34 Missense_Mutation p.L2461F 0.29 deleterious(0.01) probably_damaging(0.94) TCGA-BR-4361-01 2 63281286 63281286 C T OTX1 Missense_Mutation p.R68W 0.23 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 2 64335459 64335459 T C PELI1 5'UTR 0.05 TCGA-BR-4361-01 2 65299970 65299970 C T CEP68 Silent p.L580L 0.37 TCGA-BR-4361-01 2 65495711 65495711 G A ACTR2 Missense_Mutation p.R348H 0.25 deleterious(0.02) benign(0.263) TCGA-BR-4361-01 2 66664959 66664959 C T MEIS1 Missense_Mutation p.P35S 0.23 tolerated(0.08) benign(0.01) TCGA-BR-4361-01 2 68361749 68361749 A - WDR92 Intron 0.25 TCGA-BR-4361-01 2 71351415 71351415 T A MCEE Missense_Mutation p.H100L 0.22 tolerated(0.05) benign(0.216) TCGA-BR-4361-01 2 71742841 71742841 G A DYSF Missense_Mutation p.R283Q 0.31 tolerated(0.11) possibly_damaging(0.637) TCGA-BR-4361-01 2 71743355 71743355 G T DYSF Nonsense_Mutation p.E312* 0.25 TCGA-BR-4361-01 2 73115582 73115582 C A SPR Silent p.L148L 0.30 TCGA-BR-4361-01 2 73151580 73151580 G A EMX1 Silent p.E221E 0.29 TCGA-BR-4361-01 2 73519506 73519506 G A EGR4 Silent p.P283P 0.26 TCGA-BR-4361-01 2 73519605 73519605 C T EGR4 Silent p.P250P 0.44 TCGA-BR-4361-01 2 74135805 74135805 G A ACTG2 Nonsense_Mutation p.W87* 0.09 TCGA-BR-4361-01 2 74273760 74273760 C T TET3 Missense_Mutation p.P104L 0.28 deleterious(0.01) benign(0.093) TCGA-BR-4361-01 2 74597120 74597120 C T DCTN1 Missense_Mutation p.R455H 0.37 tolerated(0.05) probably_damaging(0.985) TCGA-BR-4361-01 2 74754443 74754443 C - AUP1 Frame_Shift_Del p.A337Pfs*2 0.43 TCGA-BR-4361-01 2 74755602 74755603 - A AUP1 Frame_Shift_Ins p.S180Ffs*59 0.11 TCGA-BR-4361-01 2 74902879 74902879 T C SEMA4F Missense_Mutation p.W496R 0.27 tolerated(0.33) probably_damaging(0.993) TCGA-BR-4361-01 2 75882354 75882354 T C MRPL19 Silent p.D274D 0.09 TCGA-BR-4361-01 2 76975781 76975781 C - LRRTM4 3'UTR 0.40 TCGA-BR-4361-01 2 80529785 80529785 G - LRRTM1 Frame_Shift_Del p.P387Lfs*116 0.37 TCGA-BR-4361-01 2 80530382 80530382 T G LRRTM1 Missense_Mutation p.K188T 0.34 deleterious(0) benign(0.315) TCGA-BR-4361-01 2 86386722 86386722 A G IMMT Silent p.H323H 0.08 TCGA-BR-4361-01 2 87017544 87017544 C A CD8A Missense_Mutation p.D104Y 0.32 tolerated(0.05) possibly_damaging(0.57) TCGA-BR-4361-01 2 88405999 88405999 C G SMYD1 Missense_Mutation p.D379E 0.22 tolerated(0.99) benign(0) TCGA-BR-4361-01 2 88474836 88474836 G A THNSL2 Missense_Mutation p.V163I 0.32 tolerated(0.09) probably_damaging(0.972) TCGA-BR-4361-01 2 88478470 88478470 A T THNSL2 Missense_Mutation p.D247V 0.29 deleterious(0.03) possibly_damaging(0.877) TCGA-BR-4361-01 2 8926386 8926386 C A KIDINS220 Missense_Mutation p.G630V 0.30 deleterious(0) probably_damaging(0.986) TCGA-BR-4361-01 2 95541412 95541412 A G TEKT4 Missense_Mutation p.H339R 0.06 tolerated(0.34) benign(0.001) TCGA-BR-4361-01 2 96072863 96072863 C T FAHD2A Silent p.I140I 0.22 TCGA-BR-4361-01 2 96789628 96789628 A G ASTL Silent p.C419C 0.10 TCGA-BR-4361-01 2 96803388 96803388 G A ASTL Missense_Mutation p.T36I 0.07 deleterious(0.04) benign(0.163) TCGA-BR-4361-01 2 9683306 9683306 A G ADAM17 Missense_Mutation p.L69P 0.06 tolerated(0.05) probably_damaging(0.925) TCGA-BR-4361-01 2 97024802 97024802 G - NCAPH Frame_Shift_Del p.D411Mfs*13 0.26 TCGA-BR-4361-01 2 97217936 97217936 G A ARID5A Silent p.T557T 0.42 TCGA-BR-4361-01 2 97267963 97267963 G A KANSL3 Missense_Mutation p.A791V 0.30 deleterious_low_confidence(0) benign(0.107) TCGA-BR-4361-01 2 97369324 97369324 G A LMAN2L 3'Flank 0.15 TCGA-BR-4361-01 2 97543757 97543757 A G FAM178B Missense_Mutation p.M626T 0.32 tolerated(0.48) benign(0.108) TCGA-BR-4361-01 2 98427639 98427639 T - TMEM131 Frame_Shift_Del p.K640Nfs*2 0.29 TCGA-BR-4361-01 2 98994199 98994199 G A CNGA3 Missense_Mutation p.A51T 0.18 tolerated_low_confidence(0.34) benign(0.002) TCGA-BR-4361-01 2 99411026 99411026 G A KIAA1211L Missense_Mutation p.A953V 0.27 deleterious(0) probably_damaging(0.997) TCGA-BR-4361-01 3 10106464 10106464 T C FANCD2 Silent p.T691T 0.09 TCGA-BR-4361-01 3 101370324 101370325 - T ZBTB11 Frame_Shift_Ins p.D950Rfs*7 0.28 TCGA-BR-4361-01 3 101451384 101451384 A G CEP97 Missense_Mutation p.N205S 0.29 deleterious(0) probably_damaging(0.999) TCGA-BR-4361-01 3 10242142 10242142 G A IRAK2 Missense_Mutation p.A123T 0.25 tolerated(1) benign(0) TCGA-BR-4361-01 3 108688562 108688562 T C MORC1 Missense_Mutation p.Q853R 0.26 tolerated(0.1) benign(0.037) TCGA-BR-4361-01 3 10976880 10976880 C T SLC6A11 Missense_Mutation p.P581S 0.07 tolerated(0.47) benign(0) TCGA-BR-4361-01 3 113176104 113176104 C T SPICE1 Silent p.V512V 0.36 TCGA-BR-4361-01 3 114058003 114058003 G - ZBTB20 Frame_Shift_Del p.P692Lfs*43 0.38 TCGA-BR-4361-01 3 118906708 118906708 C T UPK1B Silent p.N52N 0.32 TCGA-BR-4361-01 3 121158854 121158854 A C POLQ Silent p.P2458P 0.39 TCGA-BR-4361-01 3 121229067 121229067 A G POLQ Silent p.S545S 0.34 TCGA-BR-4361-01 3 121412910 121412910 G A GOLGB1 Missense_Mutation p.R2154C 0.29 benign(0.009) TCGA-BR-4361-01 3 122419228 122419228 T C PARP14 Silent p.L609L 0.48 TCGA-BR-4361-01 3 122629052 122629052 G - SEMA5B Frame_Shift_Del p.L1186* 0.27 TCGA-BR-4361-01 3 124174097 124174097 C T KALRN Missense_Mutation p.T1207M 0.29 deleterious(0.01) possibly_damaging(0.673) TCGA-BR-4361-01 3 12647712 12647712 C A RAF1 Missense_Mutation p.R223M 0.11 tolerated(0.23) possibly_damaging(0.458) TCGA-BR-4361-01 3 126724974 126724974 G A PLXNA1 Silent p.K650K 0.30 TCGA-BR-4361-01 3 126731000 126731000 C T PLXNA1 Missense_Mutation p.S771L 0.23 deleterious(0.04) benign(0.005) TCGA-BR-4361-01 3 126748300 126748300 G A PLXNA1 Silent p.S1597S 0.31 TCGA-BR-4361-01 3 127338063 127338063 A G MCM2 Missense_Mutation p.N736S 0.21 tolerated(0.21) benign(0.06) TCGA-BR-4361-01 3 128292138 128292138 G A C3orf27 Silent p.F145F 0.12 TCGA-BR-4361-01 3 128598515 128598515 G A ACAD9 5'UTR 0.06 TCGA-BR-4361-01 3 129197018 129197018 G A IFT122 Missense_Mutation p.C487Y 0.24 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 3 129252455 129252455 G A RHO Missense_Mutation p.R314Q 0.30 tolerated(0.06) probably_damaging(0.982) TCGA-BR-4361-01 3 129389611 129389611 G A TMCC1 Missense_Mutation p.T358I 0.32 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 3 129695892 129695892 C T TRH Missense_Mutation p.P188S 0.37 deleterious(0) probably_damaging(0.976) TCGA-BR-4361-01 3 130454824 130454824 A - PIK3R4 Frame_Shift_Del p.F252Lfs*27 0.27 TCGA-BR-4361-01 3 130463621 130463621 C T PIK3R4 Missense_Mutation p.D148N 0.15 deleterious(0.01) probably_damaging(0.917) TCGA-BR-4361-01 3 130694309 130694309 G A ATP2C1 Missense_Mutation p.R550H 0.30 tolerated(0.12) benign(0.003) TCGA-BR-4361-01 3 130735120 130735120 G A ASTE1 Missense_Mutation p.A526V 0.29 tolerated(0.24) benign(0.002) TCGA-BR-4361-01 3 130743303 130743303 T - ASTE1 Frame_Shift_Del p.K283Rfs*22 0.31 TCGA-BR-4361-01 3 131404727 131404727 G A CPNE4 Nonsense_Mutation p.R195* 0.38 TCGA-BR-4361-01 3 132199275 132199275 T C DNAJC13 Silent p.L945L 0.10 TCGA-BR-4361-01 3 132395426 132395426 A - UBA5 3'UTR 0.54 TCGA-BR-4361-01 3 133467393 133467393 A G TF Missense_Mutation p.K61E 0.27 deleterious(0.01) benign(0.142) TCGA-BR-4361-01 3 13372083 13372083 A G NUP210 Silent p.V1329V 0.29 TCGA-BR-4361-01 3 13381417 13381417 G A NUP210 Silent p.G1136G 0.07 TCGA-BR-4361-01 3 134322400 134322400 G A KY 3'UTR 0.25 TCGA-BR-4361-01 3 134369805 134369805 T C KY 5'UTR 0.29 TCGA-BR-4361-01 3 136088059 136088060 CT - STAG1 Frame_Shift_Del p.E812Gfs*16 0.19 TCGA-BR-4361-01 3 137729134 137729134 G A CLDN18 Missense_Mutation p.A23T 0.32 tolerated(0.13) benign(0.114) TCGA-BR-4361-01 3 13860879 13860879 G A WNT7A Silent p.G204G 0.36 TCGA-BR-4361-01 3 139094430 139094430 T C COPB2 Silent p.P177P 0.12 TCGA-BR-4361-01 3 140281687 140281687 A G CLSTN2 Silent p.L749L 0.11 TCGA-BR-4361-01 3 140785515 140785515 T C SPSB4 Missense_Mutation p.F190S 0.09 deleterious(0) probably_damaging(0.997) TCGA-BR-4361-01 3 142102233 142102233 C T XRN1 Missense_Mutation p.R842H 0.32 tolerated(0.18) benign(0.006) TCGA-BR-4361-01 3 142142409 142142409 T - XRN1 Frame_Shift_Del p.T235Hfs*19 0.28 TCGA-BR-4361-01 3 142681070 142681070 C T PAQR9 Missense_Mutation p.S370N 0.06 tolerated(0.53) benign(0) TCGA-BR-4361-01 3 142681213 142681213 G A PAQR9 Silent p.I322I 0.34 TCGA-BR-4361-01 3 14487330 14487330 G A SLC6A6 Missense_Mutation p.C112Y 0.33 deleterious(0) probably_damaging(0.954) TCGA-BR-4361-01 3 146233813 146233813 G A PLSCR1 3'UTR 0.31 TCGA-BR-4361-01 3 146322995 146322995 G T PLSCR5 Missense_Mutation p.A2D 0.25 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-BR-4361-01 3 147128402 147128402 C T ZIC1 Missense_Mutation p.S168L 0.50 deleterious(0.01) benign(0.129) TCGA-BR-4361-01 3 148880506 148880506 T A HPS3 Silent p.I774I 0.07 TCGA-BR-4361-01 3 149683924 149683924 A G PFN2 3'UTR 0.12 TCGA-BR-4361-01 3 149683931 149683931 C T PFN2 3'UTR 0.10 TCGA-BR-4361-01 3 151105758 151105758 A C MED12L Missense_Mutation p.H1715P 0.35 deleterious(0) probably_damaging(0.997) TCGA-BR-4361-01 3 151161483 151161483 C T IGSF10 Missense_Mutation p.R1751H 0.26 tolerated(0.4) benign(0.031) TCGA-BR-4361-01 3 15124104 15124104 T C ZFYVE20 Missense_Mutation p.S204G 0.34 deleterious(0.01) benign(0.073) TCGA-BR-4361-01 3 154002694 154002694 A G DHX36 Missense_Mutation p.M705T 0.28 deleterious(0) probably_damaging(0.984) TCGA-BR-4361-01 3 155199765 155199765 G A PLCH1 Silent p.S1358S 0.09 TCGA-BR-4361-01 3 155200765 155200765 A G PLCH1 Missense_Mutation p.L1025S 0.10 tolerated_low_confidence(0.14) benign(0.017) TCGA-BR-4361-01 3 155571075 155571075 C T SLC33A1 Missense_Mutation p.A238T 0.08 tolerated(0.12) benign(0.026) TCGA-BR-4361-01 3 156867305 156867305 T C CCNL1 Missense_Mutation p.R368G 0.30 deleterious(0.04) benign(0.202) TCGA-BR-4361-01 3 159605501 159605501 A G IQCJ-SCHIP1 Missense_Mutation p.K410R 0.04 tolerated(0.08) probably_damaging(0.99) TCGA-BR-4361-01 3 160143940 160143940 A - SMC4 Frame_Shift_Del p.K855Sfs*5 0.29 TCGA-BR-4361-01 3 16345145 16345145 T - OXNAD1 3'UTR 0.75 TCGA-BR-4361-01 3 16399539 16399539 A G RFTN1 Missense_Mutation p.L349S 0.29 tolerated(0.59) possibly_damaging(0.844) TCGA-BR-4361-01 3 164727162 164727162 A C SI Missense_Mutation p.F1362V 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-BR-4361-01 3 167217955 167217955 G - WDR49 Frame_Shift_Del p.P654Rfs*7 0.28 TCGA-BR-4361-01 3 169540249 169540249 C - LRRIQ4 Frame_Shift_Del p.Q182Rfs*19 0.27 TCGA-BR-4361-01 3 169546691 169546691 T C LRRIQ4 Missense_Mutation p.Y389H 0.32 tolerated(0.59) benign(0.003) TCGA-BR-4361-01 3 171338199 171338199 G A PLD1 Missense_Mutation p.A902V 0.26 tolerated(0.46) benign(0.019) TCGA-BR-4361-01 3 171392379 171392379 G T PLD1 Missense_Mutation p.L714I 0.11 tolerated(0.33) benign(0.034) TCGA-BR-4361-01 3 171965350 171965350 C T FNDC3B Missense_Mutation p.R98W 0.33 deleterious(0) probably_damaging(0.998) TCGA-BR-4361-01 3 172003767 172003767 A G FNDC3B Missense_Mutation p.K281R 0.27 deleterious(0.02) benign(0.439) TCGA-BR-4361-01 3 173996754 173996754 T C NLGN1 Silent p.G321G 0.32 TCGA-BR-4361-01 3 173998565 173998565 A G NLGN1 Silent p.S648S 0.06 TCGA-BR-4361-01 3 174951986 174951986 A G NAALADL2 Missense_Mutation p.T271A 0.10 deleterious(0.03) benign(0.008) TCGA-BR-4361-01 3 174974236 174974236 G A NAALADL2 Missense_Mutation p.D286N 0.15 deleterious(0) probably_damaging(0.962) TCGA-BR-4361-01 3 175042056 175042056 C A NAALADL2 Silent p.T344T 0.08 TCGA-BR-4361-01 3 176769342 176769342 T - TBL1XR1 Frame_Shift_Del p.N126Mfs*16 0.30 TCGA-BR-4361-01 3 178917659 178917659 A G PIK3CA Silent p.P178P 0.13 TCGA-BR-4361-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.24 tolerated(0.11) possibly_damaging(0.529) TCGA-BR-4361-01 3 180377245 180377246 CA - CCDC39 Frame_Shift_Del p.A245Ffs*18 0.31 TCGA-BR-4361-01 3 182841854 182841854 C - LAMP3 3'UTR 0.24 TCGA-BR-4361-01 3 183209880 183209880 G A KLHL6 Silent p.D567D 0.27 TCGA-BR-4361-01 3 183521069 183521069 A G YEATS2 Silent p.A1176A 0.19 TCGA-BR-4361-01 3 183699621 183699621 G A ABCC5 Silent p.C347C 0.48 TCGA-BR-4361-01 3 183881465 183881465 C T DVL3 Missense_Mutation p.S61L 0.31 tolerated(0.11) possibly_damaging(0.857) TCGA-BR-4361-01 3 18393499 18393499 T C SATB1 Silent p.P588P 0.06 TCGA-BR-4361-01 3 184019395 184019395 G A PSMD2 Missense_Mutation p.R143Q 0.32 deleterious(0) probably_damaging(0.991) TCGA-BR-4361-01 3 184019718 184019718 T C PSMD2 Missense_Mutation p.V188A 0.33 tolerated(1) benign(0.012) TCGA-BR-4361-01 3 185214708 185214708 A G TMEM41A Missense_Mutation p.Y61H 0.27 deleterious(0) possibly_damaging(0.88) TCGA-BR-4361-01 3 185434524 185434524 G A C3orf65 Nonsense_Mutation p.W119* 0.38 TCGA-BR-4361-01 3 185867951 185867951 C T DGKG Silent p.A768A 0.38 TCGA-BR-4361-01 3 186301745 186301745 A G DNAJB11 Missense_Mutation p.T278A 0.07 tolerated(0.54) benign(0.001) TCGA-BR-4361-01 3 186395646 186395646 T - HRG Frame_Shift_Del p.F519Lfs*10 0.30 TCGA-BR-4361-01 3 189711973 189711973 T C LEPREL1 Missense_Mutation p.T245A 0.34 tolerated(0.42) benign(0) TCGA-BR-4361-01 3 191093027 191093027 T A CCDC50 Missense_Mutation p.S209T 0.22 tolerated(0.58) benign(0.028) TCGA-BR-4361-01 3 194117602 194117602 C T GP5 Silent p.A470A 0.35 TCGA-BR-4361-01 3 194369411 194369411 T C LSG1 Silent p.G514G 0.33 TCGA-BR-4361-01 3 194371733 194371733 G A LSG1 Silent p.G432G 0.28 TCGA-BR-4361-01 3 194407863 194407863 G A FAM43A Missense_Mutation p.G103D 0.27 deleterious(0.01) probably_damaging(1) TCGA-BR-4361-01 3 194790661 194790661 T C XXYLT1 Missense_Mutation p.Y322C 0.11 deleterious(0) probably_damaging(0.999) TCGA-BR-4361-01 3 195245976 195245976 T - PPP1R2 Frame_Shift_Del p.K137Sfs*6 0.31 TCGA-BR-4361-01 3 19554757 19554757 A G KCNH8 Missense_Mutation p.K792R 0.34 tolerated(0.3) benign(0.01) TCGA-BR-4361-01 3 195798336 195798336 G A TFRC Silent p.N206N 0.31 TCGA-BR-4361-01 3 25637960 25637960 A G RARB Silent p.P400P 0.26 TCGA-BR-4361-01 3 25665877 25665877 A G TOP2B Silent p.I797I 0.08 TCGA-BR-4361-01 3 26751767 26751767 A G LRRC3B Missense_Mutation p.T202A 0.30 deleterious(0.02) probably_damaging(0.994) TCGA-BR-4361-01 3 27444675 27444675 T A SLC4A7 Missense_Mutation p.Y750F 0.08 tolerated(0.19) benign(0.398) TCGA-BR-4361-01 3 27472885 27472885 T C SLC4A7 Missense_Mutation p.I343V 0.06 tolerated(0.13) benign(0.006) TCGA-BR-4361-01 3 28562525 28562525 T C ZCWPW2 Missense_Mutation p.M276T 0.32 deleterious(0) probably_damaging(0.94) TCGA-BR-4361-01 3 3209403 3209403 G A CRBN Missense_Mutation p.S201F 0.26 deleterious(0.01) probably_damaging(0.93) TCGA-BR-4361-01 3 32859684 32859684 A T TRIM71 Missense_Mutation p.T38S 0.28 tolerated_low_confidence(0.2) unknown(0) TCGA-BR-4361-01 3 32860312 32860312 C T TRIM71 Missense_Mutation p.A247V 0.32 tolerated(0.5) benign(0.006) TCGA-BR-4361-01 3 32932496 32932496 T C TRIM71 Silent p.G600G 0.32 TCGA-BR-4361-01 3 32996070 32996070 A G CCR4 3'UTR 0.46 TCGA-BR-4361-01 3 35835235 35835235 T C ARPP21 Missense_Mutation p.Y743H 0.12 deleterious(0) possibly_damaging(0.878) TCGA-BR-4361-01 3 36884146 36884146 C A TRANK1 Missense_Mutation p.Q1705H 0.34 deleterious(0.01) probably_damaging(0.971) TCGA-BR-4361-01 3 37034280 37034281 CT - EPM2AIP1 Frame_Shift_Del p.R96Sfs*21 0.37 TCGA-BR-4361-01 3 37368396 37368396 T C GOLGA4 Silent p.H1695H 0.29 TCGA-BR-4361-01 3 38039624 38039625 - C VILL Frame_Shift_Ins p.L273Tfs*30 0.28 TCGA-BR-4361-01 3 38565616 38565616 C T EXOG Silent p.I290I 0.32 TCGA-BR-4361-01 3 38781019 38781019 C T SCN10A Missense_Mutation p.R756Q 0.33 deleterious(0) probably_damaging(0.997) TCGA-BR-4361-01 3 38949441 38949441 T - SCN11A Frame_Shift_Del p.K491Sfs*5 0.31 TCGA-BR-4361-01 3 39179775 39179775 T C TTC21A Silent p.Y1238Y 0.31 TCGA-BR-4361-01 3 39230771 39230771 G A XIRP1 Missense_Mutation p.R56C 0.26 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 3 40204292 40204292 C T MYRIP Nonsense_Mutation p.Q181* 0.29 TCGA-BR-4361-01 3 40211476 40211476 A C MYRIP Missense_Mutation p.Q255H 0.33 tolerated(0.19) benign(0.004) TCGA-BR-4361-01 3 42950328 42950328 G A ZNF662 Silent p.E86E 0.31 TCGA-BR-4361-01 3 43390009 43390009 T C SNRK Missense_Mutation p.L753P 0.27 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BR-4361-01 3 4355148 4355148 A G SETMAR Silent p.V241V 0.12 TCGA-BR-4361-01 3 44685542 44685542 A G ZNF197 Missense_Mutation p.T974A 0.33 tolerated(0.61) benign(0.003) TCGA-BR-4361-01 3 44700874 44700874 G A ZNF35 Missense_Mutation p.G340E 0.41 deleterious(0.03) probably_damaging(0.999) TCGA-BR-4361-01 3 44795767 44795767 A G KIAA1143 Missense_Mutation p.S68P 0.13 deleterious(0) possibly_damaging(0.777) TCGA-BR-4361-01 3 44816918 44816918 G A KIF15 Missense_Mutation p.D79N 0.18 tolerated(0.3) benign(0.009) TCGA-BR-4361-01 3 4715002 4715002 A G ITPR1 Missense_Mutation p.Q781R 0.32 deleterious(0) probably_damaging(0.978) TCGA-BR-4361-01 3 47447981 47447981 A G PTPN23 Missense_Mutation p.Y213C 0.10 unknown(0) TCGA-BR-4361-01 3 47461115 47461115 G A SCAP Missense_Mutation p.T548M 0.36 deleterious(0) possibly_damaging(0.677) TCGA-BR-4361-01 3 47537573 47537573 G A ELP6 Missense_Mutation p.P263S 0.28 tolerated(0.47) benign(0.005) TCGA-BR-4361-01 3 47888784 47888784 G A DHX30 Missense_Mutation p.D651N 0.33 tolerated(0.19) benign(0.327) TCGA-BR-4361-01 3 48506470 48506470 A G ATRIP Missense_Mutation p.T766A 0.09 tolerated(0.09) probably_damaging(0.971) TCGA-BR-4361-01 3 48510800 48510800 G T SHISA5 Silent p.A201A 0.09 TCGA-BR-4361-01 3 48612871 48612871 G - COL7A1 Frame_Shift_Del p.P2029Lfs*177 0.35 TCGA-BR-4361-01 3 48638787 48638787 C T UQCRC1 Missense_Mutation p.E274K 0.29 deleterious(0) possibly_damaging(0.79) TCGA-BR-4361-01 3 48692534 48692534 C T CELSR3 Missense_Mutation p.G1644D 0.29 deleterious(0) probably_damaging(0.997) TCGA-BR-4361-01 3 48699322 48699322 G T CELSR3 Missense_Mutation p.P249Q 0.34 deleterious_low_confidence(0) possibly_damaging(0.724) TCGA-BR-4361-01 3 49084644 49084644 C T QRICH1 Silent p.Q458Q 0.28 TCGA-BR-4361-01 3 49137466 49137466 A G QARS Missense_Mutation p.M408T 0.27 deleterious(0) probably_damaging(0.934) TCGA-BR-4361-01 3 49149178 49149178 C A USP19 Missense_Mutation p.G989V 0.27 tolerated(0.1) benign(0.014) TCGA-BR-4361-01 3 49153556 49153556 C T USP19 Silent p.T465T 0.24 TCGA-BR-4361-01 3 49362429 49362429 C T USP4 Silent p.A177A 0.33 TCGA-BR-4361-01 3 49570262 49570262 T C DAG1 Missense_Mutation p.I773T 0.08 deleterious(0) probably_damaging(0.997) TCGA-BR-4361-01 3 49690049 49690049 G T BSN Missense_Mutation p.K1020N 0.36 unknown(0) TCGA-BR-4361-01 3 49765012 49765012 C T IP6K1 Missense_Mutation p.R290H 0.31 deleterious(0.01) probably_damaging(1) TCGA-BR-4361-01 3 50095840 50095840 A G RBM6 Missense_Mutation p.M659V 0.29 deleterious(0.05) possibly_damaging(0.588) TCGA-BR-4361-01 3 50293715 50293715 G A GNAI2 Missense_Mutation p.V186M 0.33 deleterious(0) probably_damaging(0.999) TCGA-BR-4361-01 3 50368119 50368119 G A RASSF1 Missense_Mutation p.R310C 0.32 tolerated(0.07) benign(0.109) TCGA-BR-4361-01 3 51417604 51417604 C - DOCK3 Frame_Shift_Del p.P1852Qfs*45 0.41 TCGA-BR-4361-01 3 52257500 52257500 C T TLR9 Missense_Mutation p.D432N 0.16 tolerated(0.55) benign(0.005) TCGA-BR-4361-01 3 52429688 52429688 C T DNAH1 Silent p.P3751P 0.40 TCGA-BR-4361-01 3 52540711 52540711 C T STAB1 Missense_Mutation p.R612C 0.32 deleterious(0) probably_damaging(0.999) TCGA-BR-4361-01 3 52556376 52556376 T C STAB1 Missense_Mutation p.Y2166H 0.09 deleterious(0) probably_damaging(0.98) TCGA-BR-4361-01 3 52720183 52720183 C A GNL3 Intron 0.41 TCGA-BR-4361-01 3 53766111 53766111 T C CACNA1D Splice_Site p.X845_splice 0.06 TCGA-BR-4361-01 3 53783469 53783469 T C CACNA1D Silent p.Y1183Y 0.36 TCGA-BR-4361-01 3 53844288 53844288 G A CACNA1D Missense_Mutation p.S2072N 0.08 tolerated_low_confidence(0.31) benign(0.229) TCGA-BR-4361-01 3 53904097 53904097 T C ACTR8 Missense_Mutation p.Q548R 0.05 tolerated(0.32) possibly_damaging(0.905) TCGA-BR-4361-01 3 54958882 54958882 T C LRTM1 Missense_Mutation p.Q123R 0.37 tolerated(0.4) benign(0.015) TCGA-BR-4361-01 3 57294720 57294720 T C APPL1 Missense_Mutation p.V587A 0.26 deleterious(0) probably_damaging(0.996) TCGA-BR-4361-01 3 57994331 57994331 T C FLNB Missense_Mutation p.W14R 0.12 deleterious(0) probably_damaging(0.998) TCGA-BR-4361-01 3 58279454 58279454 T C ABHD6 Missense_Mutation p.S326P 0.30 tolerated(0.13) benign(0.265) TCGA-BR-4361-01 3 58484481 58484481 A G KCTD6 5'UTR 0.29 TCGA-BR-4361-01 3 65415576 65415576 T G MAGI1 Missense_Mutation p.S596R 0.38 tolerated(0.42) possibly_damaging(0.637) TCGA-BR-4361-01 3 66023680 66023680 C A MAGI1 Missense_Mutation p.V102F 0.14 deleterious(0) probably_damaging(0.976) TCGA-BR-4361-01 3 66436422 66436422 G A LRIG1 Missense_Mutation p.A591V 0.05 deleterious(0) benign(0.374) TCGA-BR-4361-01 3 67568750 67568750 T C SUCLG2 Missense_Mutation p.D194G 0.25 deleterious(0) possibly_damaging(0.903) TCGA-BR-4361-01 3 71247436 71247436 G A FOXP1 Missense_Mutation p.R33W 0.27 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BR-4361-01 3 73108188 73108188 T C PPP4R2 Silent p.G96G 0.29 TCGA-BR-4361-01 3 74383946 74383946 A G CNTN3 Silent p.Y536Y 0.27 TCGA-BR-4361-01 3 77623872 77623872 A G ROBO2 Missense_Mutation p.T748A 0.24 tolerated(0.23) benign(0.05) TCGA-BR-4361-01 3 88189082 88189082 C T ZNF654 Missense_Mutation p.R208W 0.16 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 3 8977591 8977591 A G RAD18 Missense_Mutation p.Y285H 0.07 deleterious(0.03) possibly_damaging(0.85) TCGA-BR-4361-01 3 9027593 9027593 C T SRGAP3 Silent p.T970T 0.23 TCGA-BR-4361-01 3 96706732 96706732 C T EPHA6 Missense_Mutation p.R337C 0.32 tolerated(0.05) probably_damaging(0.999) TCGA-BR-4361-01 3 97852456 97852456 A - OR5H1 Frame_Shift_Del p.K307Nfs*? 0.29 TCGA-BR-4361-01 3 9831567 9831567 G - TADA3 Frame_Shift_Del p.K97Nfs*81 0.30 TCGA-BR-4361-01 3 98538224 98538224 G A DCBLD2 Silent p.I303I 0.39 TCGA-BR-4361-01 3 98541118 98541118 T C DCBLD2 Missense_Mutation p.I262V 0.17 tolerated(0.05) benign(0.113) TCGA-BR-4361-01 3 99567788 99567788 A G FILIP1L Missense_Mutation p.V911A 0.30 tolerated(0.69) benign(0.001) TCGA-BR-4361-01 3 99881157 99881157 C T CMSS1 Missense_Mutation p.T79I 0.27 deleterious(0) probably_damaging(0.949) TCGA-BR-4361-01 4 100477370 100477370 A G TRMT10A Missense_Mutation p.L143S 0.25 deleterious(0) probably_damaging(0.942) TCGA-BR-4361-01 4 110756541 110756541 T - RRH Frame_Shift_Del p.F108Lfs*18 0.35 TCGA-BR-4361-01 4 110901129 110901129 T C EGF Silent p.G685G 0.14 TCGA-BR-4361-01 4 111482570 111482571 - T ENPEP Frame_Shift_Ins p.A913Cfs*13 0.21 TCGA-BR-4361-01 4 113353418 113353418 C T ALPK1 Silent p.C905C 0.08 TCGA-BR-4361-01 4 113356333 113356333 T A ALPK1 Missense_Mutation p.S1022T 0.04 tolerated(0.11) possibly_damaging(0.816) TCGA-BR-4361-01 4 113436383 113436383 T C NEUROG2 Silent p.V83V 0.15 TCGA-BR-4361-01 4 114275746 114275746 G T ANK2 Missense_Mutation p.R1991L 0.29 possibly_damaging(0.695) TCGA-BR-4361-01 4 114277471 114277471 A G ANK2 Missense_Mutation p.H2566R 0.28 benign(0.197) TCGA-BR-4361-01 4 114277794 114277794 A T ANK2 Nonsense_Mutation p.K2674* 0.28 TCGA-BR-4361-01 4 120192602 120192602 A G USP53 Silent p.A529A 0.31 TCGA-BR-4361-01 4 1222118 1222118 G A CTBP1 Missense_Mutation p.A70V 0.18 deleterious(0) possibly_damaging(0.76) TCGA-BR-4361-01 4 122749572 122749572 T C BBS7 Silent p.L625L 0.17 TCGA-BR-4361-01 4 123095782 123095782 T C KIAA1109 Missense_Mutation p.Y90H 0.30 possibly_damaging(0.629) TCGA-BR-4361-01 4 123161262 123161262 T C KIAA1109 Silent p.V1475V 0.08 TCGA-BR-4361-01 4 123187969 123187969 G T KIAA1109 Missense_Mutation p.G2450V 0.30 probably_damaging(0.987) TCGA-BR-4361-01 4 123193524 123193524 A T KIAA1109 Missense_Mutation p.I2804F 0.14 probably_damaging(0.925) TCGA-BR-4361-01 4 123202719 123202719 A G KIAA1109 Missense_Mutation p.T2943A 0.38 benign(0.002) TCGA-BR-4361-01 4 123271136 123271136 A G KIAA1109 Missense_Mutation p.T4586A 0.13 probably_damaging(0.982) TCGA-BR-4361-01 4 126371136 126371136 T C FAT4 Missense_Mutation p.F2989L 0.05 probably_damaging(0.997) TCGA-BR-4361-01 4 128732617 128732617 T C HSPA4L Silent p.F468F 0.38 TCGA-BR-4361-01 4 128819592 128819592 A G PLK4 Splice_Site p.X937_splice 0.32 TCGA-BR-4361-01 4 129193591 129193591 T C PGRMC2 Missense_Mutation p.D191G 0.33 deleterious(0.02) probably_damaging(0.956) TCGA-BR-4361-01 4 134071447 134071447 G A PCDH10 Missense_Mutation p.R51H 0.32 deleterious(0) probably_damaging(0.996) TCGA-BR-4361-01 4 134072100 134072100 G A PCDH10 Missense_Mutation p.V269M 0.26 deleterious(0) probably_damaging(0.957) TCGA-BR-4361-01 4 134084157 134084157 T G PCDH10 Silent p.T941T 0.32 TCGA-BR-4361-01 4 1348909 1348909 T A UVSSA Missense_Mutation p.F351Y 0.36 deleterious(0) probably_damaging(0.973) TCGA-BR-4361-01 4 13545707 13545707 C T NKX3-2 Missense_Mutation p.R111Q 0.44 tolerated_low_confidence(0.19) benign(0) TCGA-BR-4361-01 4 13602222 13602222 G A BOD1L1 Missense_Mutation p.T2101I 0.46 benign(0.045) TCGA-BR-4361-01 4 1374770 1374770 C T UVSSA Missense_Mutation p.R619C 0.13 tolerated(0.23) benign(0.009) TCGA-BR-4361-01 4 138442824 138442824 T C PCDH18 Missense_Mutation p.R923G 0.26 deleterious(0) probably_damaging(0.998) TCGA-BR-4361-01 4 139964348 139964348 C T CCRN4L Missense_Mutation p.P104L 0.27 deleterious(0.01) benign(0.347) TCGA-BR-4361-01 4 140189882 140189882 G C MGARP Missense_Mutation p.T75R 0.27 deleterious(0) possibly_damaging(0.656) TCGA-BR-4361-01 4 140640863 140640863 C T MAML3 Missense_Mutation p.V1011M 0.35 benign(0.016) TCGA-BR-4361-01 4 141317347 141317347 T C CLGN Silent p.E299E 0.11 TCGA-BR-4361-01 4 141323176 141323176 T C CLGN Missense_Mutation p.Y155C 0.26 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 4 141832328 141832328 G - RNF150 Frame_Shift_Del p.Q390Rfs*17 0.24 TCGA-BR-4361-01 4 142651089 142651089 A G IL15 Silent p.T110T 0.09 TCGA-BR-4361-01 4 144135635 144135635 A G USP38 Missense_Mutation p.K836E 0.28 tolerated(0.87) benign(0.003) TCGA-BR-4361-01 4 147824752 147824752 C T TTC29 Missense_Mutation p.C177Y 0.34 deleterious(0) benign(0.001) TCGA-BR-4361-01 4 153886120 153886120 A G FHDC1 Missense_Mutation p.T365A 0.18 tolerated(1) benign(0.004) TCGA-BR-4361-01 4 155180907 155180907 T C DCHS2 Silent p.G1738G 0.38 TCGA-BR-4361-01 4 155219676 155219676 A G DCHS2 Silent p.S1475S 0.30 TCGA-BR-4361-01 4 156289783 156289783 T C MAP9 Silent p.Q221Q 0.31 TCGA-BR-4361-01 4 158142165 158142165 T C GRIA2 5'UTR 0.36 TCGA-BR-4361-01 4 159568163 159568163 A G RXFP1 Silent p.R522R 0.06 TCGA-BR-4361-01 4 159629557 159629557 C T ETFDH Missense_Mutation p.R578W 0.30 deleterious(0) probably_damaging(0.989) TCGA-BR-4361-01 4 159789659 159789660 - G FNIP2 Frame_Shift_Ins p.S626Ffs*2 0.20 TCGA-BR-4361-01 4 160271311 160271311 A - RAPGEF2 Frame_Shift_Del p.I1087Ffs*98 0.23 TCGA-BR-4361-01 4 16165119 16165119 G A TAPT1 Nonsense_Mutation p.Q506* 0.32 TCGA-BR-4361-01 4 169013864 169013864 G A ANXA10 Missense_Mutation p.D5N 0.07 tolerated(0.48) benign(0.001) TCGA-BR-4361-01 4 170611768 170611768 T C CLCN3 Missense_Mutation p.F232L 0.30 tolerated(0.1) benign(0.338) TCGA-BR-4361-01 4 174254362 174254362 T C HMGB2 Missense_Mutation p.M52V 0.09 deleterious(0.03) benign(0.148) TCGA-BR-4361-01 4 174450023 174450023 T C HAND2 Missense_Mutation p.T140A 0.14 deleterious(0) probably_damaging(0.989) TCGA-BR-4361-01 4 178354503 178354503 T C AGA Splice_Site p.X269_splice 0.37 TCGA-BR-4361-01 4 17844998 17844999 - A NCAPG Frame_Shift_Ins p.S1002Kfs*2 0.32 TCGA-BR-4361-01 4 178911743 178911743 G A LINC01098 3'UTR 0.26 TCGA-BR-4361-01 4 183658145 183658145 C T TENM3 Missense_Mutation p.A1051V 0.32 deleterious(0) possibly_damaging(0.739) TCGA-BR-4361-01 4 185553055 185553055 C T CASP3 Missense_Mutation p.C116Y 0.07 deleterious(0) possibly_damaging(0.88) TCGA-BR-4361-01 4 185719634 185719634 T C ACSL1 Intron 0.32 TCGA-BR-4361-01 4 186066006 186066006 T C SLC25A4 Missense_Mutation p.F67S 0.29 deleterious(0.01) benign(0.3) TCGA-BR-4361-01 4 186283815 186283815 A G SNX25 Missense_Mutation p.K798E 0.31 deleterious(0) probably_damaging(0.91) TCGA-BR-4361-01 4 187004019 187004019 G A TLR3 Silent p.L393L 0.34 TCGA-BR-4361-01 4 187155135 187155135 C T KLKB1 Missense_Mutation p.T84I 0.12 tolerated(0.06) probably_damaging(0.978) TCGA-BR-4361-01 4 187192764 187192764 A G F11 Silent p.E19E 0.30 TCGA-BR-4361-01 4 187628543 187628543 G A FAT1 Silent p.V813V 0.14 TCGA-BR-4361-01 4 20469438 20469438 A - SLIT2 Frame_Shift_Del p.N155Ifs*88 0.25 TCGA-BR-4361-01 4 2065740 2065740 A G NAT8L Silent p.R265R 0.14 TCGA-BR-4361-01 4 22415356 22415356 C T GPR125 Missense_Mutation p.D631N 0.37 tolerated(0.69) possibly_damaging(0.511) TCGA-BR-4361-01 4 22422524 22422524 C T GPR125 Silent p.S598S 0.31 TCGA-BR-4361-01 4 25769194 25769195 - A SEL1L3 Frame_Shift_Ins p.W933Lfs*5 0.25 TCGA-BR-4361-01 4 26426078 26426078 G A RBPJ Nonsense_Mutation p.W217* 0.41 TCGA-BR-4361-01 4 2695394 2695394 C - FAM193A Frame_Shift_Del p.L673Sfs*142 0.34 TCGA-BR-4361-01 4 2831652 2831652 C - SH3BP2 Frame_Shift_Del p.R399Efs*19 0.40 TCGA-BR-4361-01 4 30723194 30723194 C T PCDH7 Silent p.N50N 0.29 TCGA-BR-4361-01 4 3234904 3234904 G A HTT Silent p.A2760A 0.26 TCGA-BR-4361-01 4 3318646 3318646 A C RGS12 Missense_Mutation p.D250A 0.08 tolerated(0.06) possibly_damaging(0.871) TCGA-BR-4361-01 4 3424186 3424186 C T RGS12 Silent p.C974C 0.24 TCGA-BR-4361-01 4 3430399 3430399 A G RGS12 Missense_Mutation p.K1176E 0.31 deleterious(0) possibly_damaging(0.524) TCGA-BR-4361-01 4 3768793 3768793 A G ADRA2C Missense_Mutation p.T154A 0.18 deleterious(0) probably_damaging(0.986) TCGA-BR-4361-01 4 3769594 3769594 T C ADRA2C Missense_Mutation p.F421L 0.30 tolerated(0.08) possibly_damaging(0.465) TCGA-BR-4361-01 4 38016291 38016291 C T TBC1D1 Silent p.I193I 0.31 TCGA-BR-4361-01 4 38051444 38051444 G A TBC1D1 Missense_Mutation p.R612Q 0.31 tolerated(0.62) benign(0) TCGA-BR-4361-01 4 38119751 38119751 C T TBC1D1 Missense_Mutation p.A967V 0.06 deleterious(0) probably_damaging(0.991) TCGA-BR-4361-01 4 38690460 38690460 A - KLF3 Frame_Shift_Del p.K106Nfs*21 0.29 TCGA-BR-4361-01 4 38798148 38798148 A - TLR1 Frame_Shift_Del p.W769Gfs*4 0.30 TCGA-BR-4361-01 4 39458157 39458157 C T RPL9 Missense_Mutation p.G87D 0.20 deleterious(0) probably_damaging(0.999) TCGA-BR-4361-01 4 39472857 39472857 A G LIAS Silent p.A295A 0.39 TCGA-BR-4361-01 4 40356064 40356064 A G CHRNA9 Missense_Mutation p.I323V 0.10 tolerated(0.29) benign(0.074) TCGA-BR-4361-01 4 41270149 41270149 C - UCHL1 3'UTR 0.53 TCGA-BR-4361-01 4 4199372 4199372 T C OTOP1 Missense_Mutation p.T397A 0.34 tolerated(0.22) benign(0.013) TCGA-BR-4361-01 4 419967 419967 A G ABCA11P RNA 0.30 TCGA-BR-4361-01 4 44719257 44719257 A - GNPDA2 Frame_Shift_Del p.F94Lfs*6 0.25 TCGA-BR-4361-01 4 46053588 46053588 A C GABRG1 Silent p.S328S 0.06 TCGA-BR-4361-01 4 47556800 47556800 C T ATP10D Missense_Mutation p.R565W 0.27 tolerated(0.31) possibly_damaging(0.717) TCGA-BR-4361-01 4 48115286 48115286 G A TXK Missense_Mutation p.L38F 0.09 tolerated(0.13) benign(0.006) TCGA-BR-4361-01 4 48501614 48501614 G A FRYL Missense_Mutation p.T2956M 0.32 tolerated(0.09) possibly_damaging(0.893) TCGA-BR-4361-01 4 520905 520905 G A PIGG Missense_Mutation p.C716Y 0.28 deleterious(0) probably_damaging(0.999) TCGA-BR-4361-01 4 53728660 53728660 G A RASL11B 5'UTR 0.21 TCGA-BR-4361-01 4 54327149 54327149 G A LNX1 Silent p.C704C 0.39 TCGA-BR-4361-01 4 55592140 55592140 G A KIT Silent p.T488T 0.26 TCGA-BR-4361-01 4 55604729 55604729 A G KIT 3'UTR 0.22 TCGA-BR-4361-01 4 5721059 5721059 A G EVC Missense_Mutation p.K87E 0.09 tolerated(0.11) benign(0.359) TCGA-BR-4361-01 4 57244456 57244456 T C AASDH Missense_Mutation p.N176D 0.26 tolerated(0.67) benign(0.004) TCGA-BR-4361-01 4 6293722 6293722 A C WFS1 Missense_Mutation p.E237A 0.36 tolerated(0.07) probably_damaging(0.961) TCGA-BR-4361-01 4 65175608 65175608 A C TECRL Missense_Mutation p.L198R 0.26 deleterious(0) probably_damaging(0.914) TCGA-BR-4361-01 4 657603 657603 C T PDE6B Silent p.H655H 0.35 TCGA-BR-4361-01 4 66280009 66280009 G A EPHA5 Silent p.T560T 0.09 TCGA-BR-4361-01 4 678549 678549 C T MFSD7 Missense_Mutation p.A228T 0.32 tolerated(0.23) benign(0.014) TCGA-BR-4361-01 4 68384936 68384936 T - CENPC Frame_Shift_Del p.R206Gfs*2 0.27 TCGA-BR-4361-01 4 68528931 68528931 T C UBA6 Silent p.A321A 0.29 TCGA-BR-4361-01 4 69343173 69343173 T G TMPRSS11E Missense_Mutation p.V265G 0.03 deleterious(0) probably_damaging(0.922) TCGA-BR-4361-01 4 69343205 69343205 T G TMPRSS11E Missense_Mutation p.Y276D 0.04 tolerated(0.87) probably_damaging(0.965) TCGA-BR-4361-01 4 70615468 70615470 GAA - SULT1B1 In_Frame_Del p.L115del 0.39 TCGA-BR-4361-01 4 73950975 73950975 C T ANKRD17 Missense_Mutation p.A2384T 0.31 benign(0.19) TCGA-BR-4361-01 4 74964597 74964597 G A CXCL2 Missense_Mutation p.T48I 0.30 deleterious(0.02) possibly_damaging(0.897) TCGA-BR-4361-01 4 75971491 75971491 T C PARM1 3'UTR 0.24 TCGA-BR-4361-01 4 76793305 76793305 A - PPEF2 Frame_Shift_Del p.S508Lfs*22 0.26 TCGA-BR-4361-01 4 77661424 77661424 A G SHROOM3 Missense_Mutation p.K700E 0.07 deleterious(0.03) benign(0.115) TCGA-BR-4361-01 4 78081909 78081909 T C CCNG2 Silent p.C104C 0.04 TCGA-BR-4361-01 4 79403543 79403543 A G FRAS1 Missense_Mutation p.Y2869C 0.30 possibly_damaging(0.656) TCGA-BR-4361-01 4 8029575 8029575 A G ABLIM2 Missense_Mutation p.V393A 0.29 tolerated(0.6) benign(0.001) TCGA-BR-4361-01 4 82096098 82096098 A G PRKG2 Silent p.I159I 0.36 TCGA-BR-4361-01 4 8242748 8242748 C T SH3TC1 3'UTR 0.43 TCGA-BR-4361-01 4 83891603 83891603 A G LIN54 Silent p.S276S 0.06 TCGA-BR-4361-01 4 84222192 84222192 G A HPSE Missense_Mutation p.R465W 0.34 deleterious(0.01) possibly_damaging(0.586) TCGA-BR-4361-01 4 85611684 85611684 T A WDFY3 Missense_Mutation p.K3113M 0.06 deleterious(0.01) possibly_damaging(0.765) TCGA-BR-4361-01 4 85658383 85658383 C T WDFY3 Silent p.R2237R 0.21 TCGA-BR-4361-01 4 85719168 85719168 A G WDFY3 Silent p.S972S 0.31 TCGA-BR-4361-01 4 88106783 88106783 G A KLHL8 Missense_Mutation p.R129W 0.36 deleterious(0) possibly_damaging(0.88) TCGA-BR-4361-01 4 89311835 89311835 C T HERC6 Silent p.S156S 0.28 TCGA-BR-4361-01 4 89618351 89618351 C - NAP1L5 3'UTR 0.19 TCGA-BR-4361-01 4 95575764 95575764 T C PDLIM5 Silent p.C508C 0.21 TCGA-BR-4361-01 4 96166239 96166239 G A UNC5C Nonsense_Mutation p.R278* 0.28 TCGA-BR-4361-01 4 9836622 9836622 C T SLC2A9 Silent p.P434P 0.27 TCGA-BR-4361-01 4 996134 996134 T C IDUA Silent p.N350N 0.09 TCGA-BR-4361-01 4 99996121 99996121 G A ADH5 Missense_Mutation p.A302V 0.28 deleterious(0.01) benign(0.272) TCGA-BR-4361-01 5 102508909 102508909 T C PPIP5K2 Silent p.C779C 0.32 TCGA-BR-4361-01 5 110448839 110448839 C T WDR36 Missense_Mutation p.L651F 0.11 deleterious(0.01) probably_damaging(0.994) TCGA-BR-4361-01 5 110710600 110710600 A G CAMK4 Missense_Mutation p.H98R 0.21 deleterious(0.02) possibly_damaging(0.856) TCGA-BR-4361-01 5 111500549 111500549 G A EPB41L4A 3'UTR 0.32 TCGA-BR-4361-01 5 112176653 112176653 C T APC Missense_Mutation p.R1788C 0.32 possibly_damaging(0.497) TCGA-BR-4361-01 5 122365031 122365031 A G PPIC Missense_Mutation p.V67A 0.27 tolerated(0.36) probably_damaging(0.991) TCGA-BR-4361-01 5 122708465 122708465 A G CEP120 Missense_Mutation p.L787P 0.28 deleterious(0) possibly_damaging(0.836) TCGA-BR-4361-01 5 122729096 122729096 A G CEP120 Silent p.N236N 0.12 TCGA-BR-4361-01 5 123984436 123984436 G A ZNF608 Silent p.C547C 0.35 TCGA-BR-4361-01 5 125936659 125936659 C T PHAX Missense_Mutation p.A2V 0.21 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-BR-4361-01 5 126860489 126860489 C - PRRC1 Frame_Shift_Del p.P125Lfs*30 0.29 TCGA-BR-4361-01 5 127686661 127686661 T A FBN2 Missense_Mutation p.D904V 0.21 deleterious(0) benign(0.054) TCGA-BR-4361-01 5 129241153 129241153 C - CHSY3 Frame_Shift_Del p.N213Tfs*29 0.42 TCGA-BR-4361-01 5 129521508 129521508 T - CHSY3 3'UTR 0.21 TCGA-BR-4361-01 5 134099624 134099624 T C DDX46 Silent p.G16G 0.14 TCGA-BR-4361-01 5 134724776 134724776 C T H2AFY Missense_Mutation p.S3N 0.11 deleterious(0) unknown(0) TCGA-BR-4361-01 5 13737440 13737440 G A DNAH5 Silent p.A3792A 0.25 TCGA-BR-4361-01 5 137498869 137498869 C G BRD8 Missense_Mutation p.Q679H 0.11 deleterious(0.03) probably_damaging(0.928) TCGA-BR-4361-01 5 137892147 137892147 G A HSPA9 Silent p.Y652Y 0.29 TCGA-BR-4361-01 5 137895576 137895576 T C HSPA9 Missense_Mutation p.T463A 0.25 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-BR-4361-01 5 139494690 139494690 T C PURA Silent p.A308A 0.37 TCGA-BR-4361-01 5 139919068 139919068 T - ANKHD1 Intron 0.59 TCGA-BR-4361-01 5 140188485 140188485 T C PCDHA4 Silent p.G571G 0.25 TCGA-BR-4361-01 5 140216142 140216142 C T PCDHA7 Missense_Mutation p.A725V 0.35 tolerated_low_confidence(0.08) benign(0.027) TCGA-BR-4361-01 5 140221050 140221050 C T PCDHA8 Silent p.I48I 0.32 TCGA-BR-4361-01 5 140222398 140222398 C T PCDHA8 Missense_Mutation p.R498W 0.38 deleterious_low_confidence(0.01) benign(0.276) TCGA-BR-4361-01 5 140255609 140255609 A - PCDHA12 Frame_Shift_Del p.D187Ifs*8 0.33 TCGA-BR-4361-01 5 140308328 140308328 G A PCDHAC1 Silent p.E617E 0.13 TCGA-BR-4361-01 5 140308672 140308672 T C PCDHAC1 Missense_Mutation p.V732A 0.31 tolerated(1) benign(0) TCGA-BR-4361-01 5 140475265 140475265 T C PCDHB2 Silent p.S297S 0.10 TCGA-BR-4361-01 5 140558614 140558614 C T PCDHB8 Silent p.T333T 0.13 TCGA-BR-4361-01 5 140580953 140580953 C T PCDHB11 Missense_Mutation p.R536C 0.30 deleterious_low_confidence(0) possibly_damaging(0.849) TCGA-BR-4361-01 5 140603462 140603462 C T PCDHB14 Missense_Mutation p.H129Y 0.06 deleterious_low_confidence(0.01) benign(0.058) TCGA-BR-4361-01 5 140615853 140615853 T C PCDHB18 RNA 0.32 TCGA-BR-4361-01 5 140626780 140626780 C T PCDHB15 Missense_Mutation p.A545V 0.15 tolerated_low_confidence(0.05) possibly_damaging(0.508) TCGA-BR-4361-01 5 140754314 140754314 C T PCDHGA6 Missense_Mutation p.R222C 0.33 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-BR-4361-01 5 140762574 140762574 G A PCDHGA7 Silent p.S36S 0.30 TCGA-BR-4361-01 5 140763137 140763137 G A PCDHGA7 Missense_Mutation p.S224N 0.37 deleterious_low_confidence(0.02) possibly_damaging(0.497) TCGA-BR-4361-01 5 140769136 140769136 A G PCDHGB4 Missense_Mutation p.Y562C 0.12 deleterious(0) probably_damaging(0.968) TCGA-BR-4361-01 5 140797939 140797939 A C PCDHGB7 Missense_Mutation p.Q171H 0.33 tolerated(0.2) benign(0.033) TCGA-BR-4361-01 5 140811036 140811036 A G PCDHGA12 Missense_Mutation p.D237G 0.09 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-BR-4361-01 5 140811779 140811779 G A PCDHGA12 Missense_Mutation p.A485T 0.32 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-BR-4361-01 5 140812627 140812627 C G PCDHGA12 Missense_Mutation p.H767Q 0.12 tolerated_low_confidence(0.16) benign(0.176) TCGA-BR-4361-01 5 140867053 140867053 C T PCDHGC4 Silent p.G771G 0.37 TCGA-BR-4361-01 5 141021298 141021298 G T FCHSD1 Missense_Mutation p.L660M 0.27 tolerated(0.2) probably_damaging(0.998) TCGA-BR-4361-01 5 141035786 141035786 G A ARAP3 Missense_Mutation p.R1283C 0.33 deleterious(0) probably_damaging(0.996) TCGA-BR-4361-01 5 14399145 14399145 G T TRIO Missense_Mutation p.G1527V 0.09 probably_damaging(0.999) TCGA-BR-4361-01 5 14487781 14487781 C - TRIO Frame_Shift_Del p.V2351Cfs*62 0.26 TCGA-BR-4361-01 5 145442254 145442254 C A SH3RF2 Missense_Mutation p.P727H 0.29 deleterious_low_confidence(0) probably_damaging(0.94) TCGA-BR-4361-01 5 145613207 145613207 C T RBM27 Missense_Mutation p.P349S 0.36 deleterious_low_confidence(0.03) probably_damaging(0.968) TCGA-BR-4361-01 5 145718668 145718668 G A POU4F3 5'UTR 0.18 TCGA-BR-4361-01 5 145894652 145894652 T C GPR151 Missense_Mutation p.N342S 0.25 tolerated(0.21) benign(0.08) TCGA-BR-4361-01 5 146775201 146775201 G - DPYSL3 Frame_Shift_Del p.A630Qfs*15 0.33 TCGA-BR-4361-01 5 147024501 147024501 C T JAKMIP2 Missense_Mutation p.C332Y 0.26 deleterious(0.02) benign(0.192) TCGA-BR-4361-01 5 147818027 147818027 G - FBXO38 Frame_Shift_Del p.R922Kfs*16 0.24 TCGA-BR-4361-01 5 148406227 148406227 C T SH3TC2 Nonsense_Mutation p.W987* 0.31 TCGA-BR-4361-01 5 149265935 149265935 C T PDE6A Silent p.T577T 0.30 TCGA-BR-4361-01 5 149513540 149513540 C T PDGFRB Silent p.V221V 0.34 TCGA-BR-4361-01 5 149759253 149759253 A G TCOF1 Silent p.S939S 0.09 TCGA-BR-4361-01 5 150886794 150886794 G - FAT2 Frame_Shift_Del p.R4147Dfs*52 0.31 TCGA-BR-4361-01 5 151304167 151304167 T A GLRA1 5'UTR 0.13 TCGA-BR-4361-01 5 151784146 151784146 A C NMUR2 Missense_Mutation p.F177V 0.34 deleterious(0.03) benign(0.403) TCGA-BR-4361-01 5 153857288 153857288 C T HAND1 Missense_Mutation p.R94Q 0.43 deleterious(0.02) benign(0.182) TCGA-BR-4361-01 5 154179464 154179464 C T LARP1 Silent p.T449T 0.29 TCGA-BR-4361-01 5 154281007 154281007 G C GEMIN5 Missense_Mutation p.A969G 0.29 deleterious(0.05) benign(0.049) TCGA-BR-4361-01 5 156323 156323 C T PLEKHG4B Silent p.S426S 0.13 TCGA-BR-4361-01 5 156375481 156375481 A G TIMD4 Missense_Mutation p.S264P 0.13 tolerated(0.13) benign(0.031) TCGA-BR-4361-01 5 156899400 156899400 C T NIPAL4 Missense_Mutation p.A278V 0.31 tolerated(0.1) probably_damaging(0.99) TCGA-BR-4361-01 5 159437849 159437849 C T TTC1 Missense_Mutation p.S105L 0.27 deleterious(0.01) benign(0.137) TCGA-BR-4361-01 5 159738959 159738959 A G CCNJL 5'UTR 0.36 TCGA-BR-4361-01 5 159797639 159797639 T C C1QTNF2 Silent p.G2G 0.17 TCGA-BR-4361-01 5 159849801 159849801 T G PTTG1 Silent p.A59A 0.08 TCGA-BR-4361-01 5 160721035 160721035 T C GABRB2 3'UTR 0.36 TCGA-BR-4361-01 5 161115971 161115971 T - GABRA6 Frame_Shift_Del p.F83Sfs*10 0.28 TCGA-BR-4361-01 5 161522510 161522510 C T GABRG2 Missense_Mutation p.T90M 0.33 deleterious(0) probably_damaging(0.999) TCGA-BR-4361-01 5 162880962 162880962 A - NUDCD2 3'UTR 0.37 TCGA-BR-4361-01 5 162945385 162945385 T C MAT2B 3'UTR 0.29 TCGA-BR-4361-01 5 16668508 16668508 G A MYO10 Missense_Mutation p.R1985C 0.35 deleterious(0) probably_damaging(0.993) TCGA-BR-4361-01 5 16670846 16670846 C T MYO10 Missense_Mutation p.R1891Q 0.28 deleterious(0) probably_damaging(0.994) TCGA-BR-4361-01 5 167850888 167850888 C - WWC1 Frame_Shift_Del p.S544Pfs*29 0.39 TCGA-BR-4361-01 5 169015404 169015404 A - SPDL1 5'UTR 0.54 TCGA-BR-4361-01 5 169705 169705 C G PLEKHG4B Missense_Mutation p.H887D 0.35 deleterious(0) probably_damaging(0.997) TCGA-BR-4361-01 5 170736691 170736691 C T TLX3 Silent p.L108L 0.29 TCGA-BR-4361-01 5 171384609 171384609 A G FBXW11 Missense_Mutation p.C47R 0.11 tolerated_low_confidence(0.48) benign(0) TCGA-BR-4361-01 5 171406 171406 C T PLEKHG4B Silent p.Y943Y 0.25 TCGA-BR-4361-01 5 171765730 171765730 G A SH3PXD2B Silent p.T793T 0.26 TCGA-BR-4361-01 5 175793505 175793505 G A ARL10 Silent p.P102P 0.20 TCGA-BR-4361-01 5 175798761 175798761 C T ARL10 Missense_Mutation p.R200W 0.29 deleterious(0) probably_damaging(0.912) TCGA-BR-4361-01 5 175958479 175958479 G A RNF44 Silent p.C150C 0.28 TCGA-BR-4361-01 5 176011640 176011640 G - CDHR2 Frame_Shift_Del p.G788Vfs*4 0.29 TCGA-BR-4361-01 5 176083976 176083976 A G TSPAN17 Intron 0.33 TCGA-BR-4361-01 5 176306317 176306317 A G UNC5A Missense_Mutation p.R731G 0.07 tolerated(0.07) benign(0.231) TCGA-BR-4361-01 5 176707797 176707797 C T NSD1 Missense_Mutation p.R1952W 0.28 deleterious(0) probably_damaging(0.996) TCGA-BR-4361-01 5 176832994 176832994 T C F12 Missense_Mutation p.T62A 0.32 tolerated(0.06) benign(0.217) TCGA-BR-4361-01 5 176911090 176911090 G A PDLIM7 Silent p.G384G 0.31 TCGA-BR-4361-01 5 176952098 176952098 G A FAM193B Missense_Mutation p.R462W 0.25 deleterious(0.02) possibly_damaging(0.888) TCGA-BR-4361-01 5 178310550 178310550 G A ZNF354B Missense_Mutation p.S366N 0.07 tolerated(0.3) benign(0.023) TCGA-BR-4361-01 5 178311048 178311048 G A ZNF354B Missense_Mutation p.G532D 0.34 tolerated(0.1) probably_damaging(0.958) TCGA-BR-4361-01 5 178541014 178541014 G A ADAMTS2 Missense_Mutation p.P1164S 0.05 deleterious_low_confidence(0.03) benign(0.109) TCGA-BR-4361-01 5 1799051 1799051 T C MRPL36 5'UTR 0.42 TCGA-BR-4361-01 5 180651147 180651147 G A TRIM41 Missense_Mutation p.G50R 0.32 deleterious(0.01) unknown(0) TCGA-BR-4361-01 5 194870 194870 T C LRRC14B Missense_Mutation p.L316P 0.11 deleterious(0) probably_damaging(0.928) TCGA-BR-4361-01 5 24488219 24488219 T - CDH10 Frame_Shift_Del p.E641Sfs*3 0.23 TCGA-BR-4361-01 5 32712294 32712294 T C NPR3 Missense_Mutation p.Y138H 0.29 deleterious(0.01) benign(0.196) TCGA-BR-4361-01 5 33596060 33596060 T C ADAMTS12 Missense_Mutation p.H878R 0.07 tolerated(0.84) benign(0.005) TCGA-BR-4361-01 5 33938285 33938285 G A RXFP3 3'UTR 0.14 TCGA-BR-4361-01 5 33947401 33947401 G A SLC45A2 Missense_Mutation p.T412M 0.31 deleterious(0) probably_damaging(0.996) TCGA-BR-4361-01 5 33997269 33997269 A G AMACR Intron 0.15 TCGA-BR-4361-01 5 35795817 35795817 T C SPEF2 Missense_Mutation p.F1584L 0.40 deleterious(0) benign(0.123) TCGA-BR-4361-01 5 35814658 35814658 A G SPEF2 3'UTR 0.39 TCGA-BR-4361-01 5 3600279 3600279 T G IRX1 Missense_Mutation p.L406R 0.23 tolerated(0.15) benign(0.218) TCGA-BR-4361-01 5 36985832 36985832 T C NIPBL Silent p.S850S 0.07 TCGA-BR-4361-01 5 37059070 37059070 A G NIPBL Silent p.E2496E 0.33 TCGA-BR-4361-01 5 38496504 38496504 G A LIFR Missense_Mutation p.A622V 0.28 deleterious(0.03) benign(0.217) TCGA-BR-4361-01 5 39331866 39331866 A G C9 Missense_Mutation p.F176S 0.25 deleterious(0) possibly_damaging(0.873) TCGA-BR-4361-01 5 39393475 39393475 A G DAB2 Missense_Mutation p.Y38H 0.05 tolerated(0.06) possibly_damaging(0.671) TCGA-BR-4361-01 5 41142990 41142990 C A C6 Silent p.V914V 0.08 TCGA-BR-4361-01 5 42718856 42718856 G T GHR Missense_Mutation p.R416M 0.18 deleterious(0.02) possibly_damaging(0.897) TCGA-BR-4361-01 5 43280252 43280252 C T NIM1K Silent p.D244D 0.30 TCGA-BR-4361-01 5 43656831 43656831 C T NNT Silent p.G790G 0.29 TCGA-BR-4361-01 5 484636 484636 C T SLC9A3 Missense_Mutation p.A311T 0.23 deleterious(0) probably_damaging(0.992) TCGA-BR-4361-01 5 5239878 5239878 T C ADAMTS16 Missense_Mutation p.V788A 0.13 deleterious(0.01) possibly_damaging(0.458) TCGA-BR-4361-01 5 52781588 52781588 T - FST Intron 0.22 TCGA-BR-4361-01 5 54420721 54420721 A G CDC20B Silent p.S375S 0.16 TCGA-BR-4361-01 5 5461230 5461231 - A KIAA0947 Frame_Shift_Ins p.E597Rfs*13 0.28 TCGA-BR-4361-01 5 57753005 57753005 A T PLK2 Intron 0.26 TCGA-BR-4361-01 5 59893631 59893631 T C DEPDC1B Silent p.A513A 0.05 TCGA-BR-4361-01 5 60198332 60198332 T C ERCC8 Missense_Mutation p.H185R 0.19 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 5 60455819 60455819 T - SMIM15 Frame_Shift_Del p.K60Nfs*12 0.26 TCGA-BR-4361-01 5 61642978 61642978 T C KIF2A Missense_Mutation p.V29A 0.55 deleterious(0.01) probably_damaging(0.999) TCGA-BR-4361-01 5 61694653 61694653 T A DIMT1 Missense_Mutation p.Q99L 0.12 deleterious(0.05) benign(0.008) TCGA-BR-4361-01 5 61847115 61847115 T - IPO11 Frame_Shift_Del p.S847Lfs*22 0.31 TCGA-BR-4361-01 5 64881889 64881889 G T PPWD1 Nonsense_Mutation p.G560* 0.15 TCGA-BR-4361-01 5 64883133 64883133 A G PPWD1 Silent p.E617E 0.27 TCGA-BR-4361-01 5 65340099 65340099 T C ERBB2IP Silent p.H521H 0.37 TCGA-BR-4361-01 5 6604762 6604762 T C NSUN2 Missense_Mutation p.N592D 0.08 tolerated(0.76) benign(0.41) TCGA-BR-4361-01 5 6754991 6754991 G A PAPD7 Missense_Mutation p.R521H 0.23 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BR-4361-01 5 67576452 67576452 T C PIK3R1 Missense_Mutation p.L244S 0.31 deleterious(0.01) probably_damaging(0.957) TCGA-BR-4361-01 5 68473464 68473464 A G CCNB1 3'UTR 0.07 TCGA-BR-4361-01 5 70952852 70952852 A G MCCC2 3'UTR 0.20 TCGA-BR-4361-01 5 71491781 71491781 C T MAP1B Silent p.L867L 0.32 TCGA-BR-4361-01 5 72427510 72427510 G A TMEM171 Missense_Mutation p.A310T 0.28 tolerated(0.65) benign(0.016) TCGA-BR-4361-01 5 74016518 74016518 G C HEXB Missense_Mutation p.R520T 0.29 tolerated(1) benign(0.003) TCGA-BR-4361-01 5 74026118 74026118 G A GFM2 Nonsense_Mutation p.R565* 0.29 TCGA-BR-4361-01 5 74981304 74981304 C T POC5 Missense_Mutation p.D379N 0.06 tolerated(0.18) probably_damaging(0.981) TCGA-BR-4361-01 5 76728856 76728856 A - WDR41 3'UTR 0.34 TCGA-BR-4361-01 5 7709482 7709482 C T ADCY2 Silent p.N520N 0.14 TCGA-BR-4361-01 5 79027098 79027098 G T CMYA5 Missense_Mutation p.G837V 0.34 benign(0.074) TCGA-BR-4361-01 5 80074641 80074641 G A MSH3 Nonsense_Mutation p.W807* 0.27 TCGA-BR-4361-01 5 80382666 80382666 T C RASGRF2 Silent p.D428D 0.08 TCGA-BR-4361-01 5 80600735 80600735 A G ZCCHC9 Silent p.A53A 0.29 TCGA-BR-4361-01 5 80762804 80762804 A G SSBP2 Silent p.P209P 0.36 TCGA-BR-4361-01 5 89815165 89815165 C T LYSMD3 Missense_Mutation p.R131H 0.29 tolerated(0.07) benign(0.011) TCGA-BR-4361-01 5 89948258 89948258 A G GPR98 Missense_Mutation p.E1171G 0.24 possibly_damaging(0.727) TCGA-BR-4361-01 5 89979549 89979549 T C GPR98 Silent p.P1937P 0.30 TCGA-BR-4361-01 5 89992933 89992933 A G GPR98 Missense_Mutation p.T2709A 0.38 possibly_damaging(0.827) TCGA-BR-4361-01 5 90040924 90040924 T A GPR98 Missense_Mutation p.N3537K 0.04 benign(0.054) TCGA-BR-4361-01 5 90041428 90041428 A G GPR98 Missense_Mutation p.E3597G 0.27 probably_damaging(0.982) TCGA-BR-4361-01 5 90678675 90678677 CTT - ARRDC3 In_Frame_Del p.E78del 0.32 TCGA-BR-4361-01 5 94772530 94772530 A G FAM81B Silent p.E271E 0.21 TCGA-BR-4361-01 5 95234064 95234064 G A ELL2 Missense_Mutation p.H469Y 0.29 deleterious(0.03) benign(0.308) TCGA-BR-4361-01 5 95249542 95249542 C T ELL2 Missense_Mutation p.M138I 0.10 deleterious(0.01) benign(0.312) TCGA-BR-4361-01 5 96332172 96332172 T C LNPEP Missense_Mutation p.F496L 0.07 tolerated(0.25) benign(0.05) TCGA-BR-4361-01 6 100838549 100838549 C T SIM1 Silent p.S663S 0.35 TCGA-BR-4361-01 6 105177475 105177475 C T HACE1 3'UTR 0.25 TCGA-BR-4361-01 6 105781355 105781355 A G PREP Silent p.I283I 0.35 TCGA-BR-4361-01 6 106552829 106552829 A G PRDM1 Missense_Mutation p.D265G 0.31 tolerated(0.07) benign(0.027) TCGA-BR-4361-01 6 107076676 107076676 A G RTN4IP1 Missense_Mutation p.V74A 0.08 deleterious(0) probably_damaging(0.997) TCGA-BR-4361-01 6 108066254 108066254 C T SCML4 Missense_Mutation p.R194Q 0.38 tolerated(0.08) benign(0.086) TCGA-BR-4361-01 6 108243033 108243033 A G SEC63 Silent p.V140V 0.04 TCGA-BR-4361-01 6 109752425 109752425 T C PPIL6 Missense_Mutation p.K119E 0.06 tolerated(0.07) possibly_damaging(0.593) TCGA-BR-4361-01 6 110146437 110146437 A G FIG4 Missense_Mutation p.Y898C 0.23 deleterious(0) probably_damaging(0.999) TCGA-BR-4361-01 6 110935840 110935840 G A CDK19 Silent p.S469S 0.11 TCGA-BR-4361-01 6 111320915 111320915 T C RPF2 Silent p.G106G 0.05 TCGA-BR-4361-01 6 111695404 111695404 T A REV3L Missense_Mutation p.N1385I 0.10 tolerated_low_confidence(0.06) benign(0.001) TCGA-BR-4361-01 6 111912880 111912880 C T TRAF3IP2 Missense_Mutation p.R137H 0.14 tolerated(0.37) benign(0.005) TCGA-BR-4361-01 6 112462562 112462562 T C LAMA4 Silent p.E937E 0.30 TCGA-BR-4361-01 6 112528337 112528337 G A LAMA4 Missense_Mutation p.R103W 0.32 tolerated(0.09) benign(0.103) TCGA-BR-4361-01 6 116600509 116600509 G A TSPYL1 Missense_Mutation p.T162I 0.33 tolerated(1) benign(0.021) TCGA-BR-4361-01 6 117862089 117862089 T C DCBLD1 Missense_Mutation p.S420P 0.33 tolerated(0.16) possibly_damaging(0.504) TCGA-BR-4361-01 6 119285848 119285848 A G FAM184A Missense_Mutation p.I1041T 0.13 deleterious(0) possibly_damaging(0.791) TCGA-BR-4361-01 6 119297200 119297200 C T FAM184A Missense_Mutation p.R822H 0.26 deleterious(0.04) probably_damaging(0.925) TCGA-BR-4361-01 6 12120215 12120215 C T HIVEP1 Missense_Mutation p.P63S 0.04 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 6 121768708 121768708 C T GJA1 Missense_Mutation p.R239W 0.24 deleterious(0.01) possibly_damaging(0.507) TCGA-BR-4361-01 6 122768017 122768017 A G SERINC1 Silent p.D376D 0.30 TCGA-BR-4361-01 6 123892227 123892227 G A TRDN Missense_Mutation p.P25S 0.08 tolerated_low_confidence(0.06) unknown(0) TCGA-BR-4361-01 6 125269226 125269226 C T RP11-510H23.1 RNA 0.14 TCGA-BR-4361-01 6 127469863 127469863 A G RSPO3 Silent p.S56S 0.30 TCGA-BR-4361-01 6 127836026 127836026 T C SOGA3 Missense_Mutation p.Y423C 0.27 deleterious(0.02) probably_damaging(0.912) TCGA-BR-4361-01 6 128318067 128318067 G A PTPRK Nonsense_Mutation p.R916* 0.33 TCGA-BR-4361-01 6 128643450 128643450 A G PTPRK Missense_Mutation p.Y77H 0.33 deleterious(0) benign(0.186) TCGA-BR-4361-01 6 129759812 129759812 G A LAMA2 Missense_Mutation p.G1997D 0.05 tolerated(0.22) benign(0.011) TCGA-BR-4361-01 6 131903792 131903792 C T ARG1 Missense_Mutation p.T174I 0.26 deleterious(0.02) benign(0.012) TCGA-BR-4361-01 6 13283685 13283685 G A TBC1D7 Intron 0.34 TCGA-BR-4361-01 6 133005526 133005526 A G VNN1 Missense_Mutation p.V436A 0.34 deleterious(0) probably_damaging(0.996) TCGA-BR-4361-01 6 13306708 13306708 A G TBC1D7 Silent p.A239A 0.19 TCGA-BR-4361-01 6 13365792 13365792 C T GFOD1 Missense_Mutation p.G119D 0.08 tolerated(0.16) benign(0.13) TCGA-BR-4361-01 6 136913728 136913728 G A MAP3K5 Missense_Mutation p.P968L 0.35 deleterious(0) possibly_damaging(0.808) TCGA-BR-4361-01 6 136977530 136977530 G A MAP3K5 Missense_Mutation p.P532L 0.09 tolerated(0.26) benign(0.119) TCGA-BR-4361-01 6 138200209 138200209 A G TNFAIP3 Missense_Mutation p.T543A 0.29 deleterious(0.03) benign(0.063) TCGA-BR-4361-01 6 138539364 138539365 - T PBOV1 Frame_Shift_Ins p.E57Rfs*14 0.24 TCGA-BR-4361-01 6 143093511 143093511 G T HIVEP2 Missense_Mutation p.L789I 0.09 tolerated(0.34) benign(0.007) TCGA-BR-4361-01 6 143793410 143793410 A G PEX3 Missense_Mutation p.K231R 0.21 tolerated(0.67) benign(0.001) TCGA-BR-4361-01 6 144769741 144769741 T C UTRN Silent p.T636T 0.04 TCGA-BR-4361-01 6 146755183 146755183 T - GRM1 Frame_Shift_Del p.S947Qfs*11 0.32 TCGA-BR-4361-01 6 147635760 147635760 G A STXBP5 Missense_Mutation p.D464N 0.08 deleterious(0) possibly_damaging(0.644) TCGA-BR-4361-01 6 148853986 148853986 A G SASH1 Missense_Mutation p.K540E 0.09 deleterious(0) probably_damaging(0.963) TCGA-BR-4361-01 6 148869802 148869802 A G SASH1 3'UTR 0.12 TCGA-BR-4361-01 6 149730931 149730931 A G TAB2 3'UTR 0.29 TCGA-BR-4361-01 6 149777991 149777991 T C ZC3H12D Missense_Mutation p.Y164C 0.16 deleterious(0.01) possibly_damaging(0.449) TCGA-BR-4361-01 6 151766783 151766783 G A RMND1 Missense_Mutation p.P55L 0.27 tolerated_low_confidence(0.09) benign(0.009) TCGA-BR-4361-01 6 152469422 152469422 G A SYNE1 Missense_Mutation p.A8245V 0.32 benign(0.001) TCGA-BR-4361-01 6 152557373 152557373 T C SYNE1 Silent p.R6755R 0.05 TCGA-BR-4361-01 6 152652220 152652220 C T SYNE1 Missense_Mutation p.G4534R 0.27 benign(0.372) TCGA-BR-4361-01 6 152673183 152673183 T - SYNE1 Frame_Shift_Del p.A3854Lfs*20 0.29 TCGA-BR-4361-01 6 152718065 152718065 A G SYNE1 Silent p.T2467T 0.26 TCGA-BR-4361-01 6 152809528 152809528 T C SYNE1 Intron 0.24 TCGA-BR-4361-01 6 152847248 152847248 A G SYNE1 Silent p.L64L 0.29 TCGA-BR-4361-01 6 15496925 15496925 C T JARID2 Missense_Mutation p.P490L 0.18 deleterious_low_confidence(0) possibly_damaging(0.755) TCGA-BR-4361-01 6 155154296 155154296 G T SCAF8 Missense_Mutation p.V1195F 0.12 deleterious_low_confidence(0.02) probably_damaging(0.949) TCGA-BR-4361-01 6 155596891 155596891 T C CLDN20 Missense_Mutation p.L13P 0.10 deleterious(0) probably_damaging(0.975) TCGA-BR-4361-01 6 15638027 15638027 T A DTNBP1 Missense_Mutation p.D57V 0.11 tolerated(0.06) benign(0.085) TCGA-BR-4361-01 6 158497755 158497755 C - SYNJ2 Frame_Shift_Del p.A799Pfs*25 0.37 TCGA-BR-4361-01 6 160164712 160164712 G A WTAP Missense_Mutation p.G54D 0.11 tolerated(0.09) benign(0.242) TCGA-BR-4361-01 6 160903847 160903847 T C LPAL2 RNA 0.12 TCGA-BR-4361-01 6 161032713 161032713 G A LPA Silent p.H828H 0.22 TCGA-BR-4361-01 6 161054904 161054904 G A LPA Silent p.H372H 0.13 TCGA-BR-4361-01 6 161087343 161087343 T C LPA 5'UTR 0.15 TCGA-BR-4361-01 6 1611083 1611083 T C FOXC1 Missense_Mutation p.C135R 0.06 deleterious(0) probably_damaging(0.998) TCGA-BR-4361-01 6 161152266 161152266 T C PLG Splice_Site p.X480_splice 0.21 TCGA-BR-4361-01 6 16143397 16143397 T C MYLIP Missense_Mutation p.V204A 0.08 deleterious(0) possibly_damaging(0.522) TCGA-BR-4361-01 6 16145537 16145537 G A MYLIP Missense_Mutation p.A413T 0.27 tolerated(0.44) benign(0.008) TCGA-BR-4361-01 6 161502018 161502018 G A MAP3K4 Missense_Mutation p.E735K 0.18 tolerated(0.68) benign(0.005) TCGA-BR-4361-01 6 161527693 161527693 G A MAP3K4 Missense_Mutation p.G1335D 0.38 tolerated(0.09) probably_damaging(0.987) TCGA-BR-4361-01 6 16328417 16328417 C T ATXN1 Missense_Mutation p.G42D 0.16 tolerated(0.19) benign(0.075) TCGA-BR-4361-01 6 166571994 166571994 C - T Frame_Shift_Del p.A373Pfs*52 0.28 TCGA-BR-4361-01 6 168348992 168348992 G A MLLT4 Missense_Mutation p.R1215K 0.10 tolerated_low_confidence(0.06) benign(0.208) TCGA-BR-4361-01 6 168434697 168434697 T C KIF25 Silent p.A101A 0.19 TCGA-BR-4361-01 6 170889180 170889180 C T PDCD2 Silent p.E224E 0.25 TCGA-BR-4361-01 6 17794613 17794613 C A KIF13A Missense_Mutation p.R1030I 0.33 deleterious(0) probably_damaging(0.999) TCGA-BR-4361-01 6 20846385 20846385 G A CDKAL1 Missense_Mutation p.D240N 0.27 tolerated(0.27) benign(0.005) TCGA-BR-4361-01 6 24423946 24423946 T - MRS2 3'UTR 0.32 TCGA-BR-4361-01 6 26157199 26157199 T C HIST1H1E Missense_Mutation p.V194A 0.12 tolerated(0.32) unknown(0) TCGA-BR-4361-01 6 26158753 26158753 T A HIST1H2BD Missense_Mutation p.V119D 0.16 deleterious_low_confidence(0) possibly_damaging(0.675) TCGA-BR-4361-01 6 26225698 26225698 G A HIST1H3E Missense_Mutation p.E106K 0.51 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-BR-4361-01 6 26468337 26468337 G T BTN2A1 Missense_Mutation p.A382S 0.46 tolerated(0.4) benign(0.007) TCGA-BR-4361-01 6 2683360 2683360 A G MYLK4 Silent p.D194D 0.40 TCGA-BR-4361-01 6 27775413 27775413 G A HIST1H2BL Missense_Mutation p.T91I 0.09 deleterious_low_confidence(0) benign(0.41) TCGA-BR-4361-01 6 27834749 27834749 T C HIST1H1B Missense_Mutation p.T187A 0.40 tolerated(0.79) benign(0.184) TCGA-BR-4361-01 6 28213206 28213206 C T ZKSCAN4 Silent p.R442R 0.11 TCGA-BR-4361-01 6 28964094 28964094 T C ZNF311 Missense_Mutation p.N229D 0.04 tolerated(0.29) benign(0.078) TCGA-BR-4361-01 6 29692222 29692222 G A HLA-F Missense_Mutation p.A203T 0.41 tolerated_low_confidence(0.19) probably_damaging(0.979) TCGA-BR-4361-01 6 29911191 29911191 G A HLA-A Missense_Mutation p.A164T 0.22 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BR-4361-01 6 29913376 29913376 A G HLA-A 3'UTR 0.38 TCGA-BR-4361-01 6 30688263 30688263 C A TUBB 5'UTR 0.07 TCGA-BR-4361-01 6 30955993 30955993 G A MUC21 3'UTR 0.33 TCGA-BR-4361-01 6 31239472 31239472 A G HLA-C Missense_Mutation p.Y83H 0.45 deleterious_low_confidence(0.01) probably_damaging(0.976) TCGA-BR-4361-01 6 31599957 31599957 C T PRRC2A Silent p.R1169R 0.60 TCGA-BR-4361-01 6 32156218 32156218 T C PBX2 Missense_Mutation p.N120S 0.46 deleterious(0.01) probably_damaging(0.919) TCGA-BR-4361-01 6 32160025 32160026 - A GPSM3 Frame_Shift_Ins p.Q18Sfs*3 0.41 TCGA-BR-4361-01 6 3225660 3225660 G T TUBB2B Silent p.T221T 0.29 TCGA-BR-4361-01 6 32713800 32713800 C T HLA-DQA2 Silent p.D188D 0.48 TCGA-BR-4361-01 6 32803014 32803014 T C TAP2 Missense_Mutation p.I288V 0.09 tolerated(0.22) benign(0.015) TCGA-BR-4361-01 6 32805593 32805593 T C TAP2 Missense_Mutation p.R140G 0.27 deleterious(0) benign(0.1) TCGA-BR-4361-01 6 32805788 32805788 G - TAP2 Frame_Shift_Del p.L75* 0.51 TCGA-BR-4361-01 6 32810470 32810470 C T PSMB8 Missense_Mutation p.R129H 0.44 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 6 33287839 33287839 C T DAXX Missense_Mutation p.E472K 0.36 deleterious(0.04) probably_damaging(0.989) TCGA-BR-4361-01 6 35423675 35423675 C T FANCE Missense_Mutation p.R134C 0.54 deleterious(0.02) benign(0.017) TCGA-BR-4361-01 6 35911621 35911621 T - SLC26A8 3'UTR 0.20 TCGA-BR-4361-01 6 36651993 36651993 G A CDKN1A Missense_Mutation p.A39T 0.18 tolerated(0.15) possibly_damaging(0.855) TCGA-BR-4361-01 6 36946377 36946377 G A MTCH1 Silent p.I139I 0.48 TCGA-BR-4361-01 6 37448044 37448044 T C CMTR1 3'UTR 0.36 TCGA-BR-4361-01 6 37623659 37623659 T C MDGA1 Silent p.P132P 0.47 TCGA-BR-4361-01 6 3850929 3850929 G A FAM50B Missense_Mutation p.R295H 0.35 deleterious(0) probably_damaging(0.997) TCGA-BR-4361-01 6 38650639 38650639 A G GLO1 Silent p.T107T 0.40 TCGA-BR-4361-01 6 38838249 38838249 A G DNAH8 Missense_Mutation p.T2084A 0.07 benign(0.146) TCGA-BR-4361-01 6 38840893 38840893 C T DNAH8 Silent p.S2266S 0.15 TCGA-BR-4361-01 6 38913267 38913267 C T DNAH8 Missense_Mutation p.A3794V 0.43 possibly_damaging(0.85) TCGA-BR-4361-01 6 40359769 40359769 G A LRFN2 Silent p.G761G 0.35 TCGA-BR-4361-01 6 40399694 40399694 T C LRFN2 Missense_Mutation p.S387G 0.15 tolerated(0.56) benign(0.001) TCGA-BR-4361-01 6 4044165 4044165 C T PRPF4B Missense_Mutation p.A590V 0.33 deleterious(0.05) unknown(0) TCGA-BR-4361-01 6 4060797 4060797 C T PRPF4B Nonsense_Mutation p.R991* 0.29 TCGA-BR-4361-01 6 40996272 40996272 C T UNC5CL Missense_Mutation p.G466D 0.15 tolerated(0.08) probably_damaging(1) TCGA-BR-4361-01 6 41303947 41303947 T A NCR2 Missense_Mutation p.S59T 0.15 deleterious(0.05) benign(0.047) TCGA-BR-4361-01 6 41309564 41309564 C T NCR2 Missense_Mutation p.R143C 0.43 tolerated(0.2) benign(0.001) TCGA-BR-4361-01 6 42231112 42231112 G - TRERF1 Frame_Shift_Del p.S611Pfs*104 0.35 TCGA-BR-4361-01 6 42797264 42797264 A G GLTSCR1L Missense_Mutation p.Q398R 0.06 deleterious(0.01) probably_damaging(0.949) TCGA-BR-4361-01 6 42797872 42797872 A G GLTSCR1L Missense_Mutation p.T601A 0.08 tolerated(0.49) benign(0.008) TCGA-BR-4361-01 6 42986446 42986446 A C KLHDC3 Missense_Mutation p.K270T 0.05 tolerated(0.38) probably_damaging(0.986) TCGA-BR-4361-01 6 43155501 43155501 C T CUL9 Silent p.A544A 0.36 TCGA-BR-4361-01 6 43305768 43305768 T C ZNF318 Missense_Mutation p.T1990A 0.06 benign(0.005) TCGA-BR-4361-01 6 43305890 43305890 T C ZNF318 Missense_Mutation p.Q1949R 0.06 benign(0.154) TCGA-BR-4361-01 6 44221447 44221447 T - HSP90AB1 3'UTR 0.26 TCGA-BR-4361-01 6 46107942 46107942 A - ENPP4 Frame_Shift_Del p.I210* 0.28 TCGA-BR-4361-01 6 46800870 46800870 C T MEP1A Missense_Mutation p.R402C 0.06 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 6 47682443 47682443 T - GPR115 Frame_Shift_Del p.F489Sfs*21 0.34 TCGA-BR-4361-01 6 4892220 4892220 G A CDYL Missense_Mutation p.V100M 0.29 deleterious(0.04) possibly_damaging(0.656) TCGA-BR-4361-01 6 53785559 53785559 G T LRRC1 Silent p.T472T 0.31 TCGA-BR-4361-01 6 55147129 55147129 G A HCRTR2 Silent p.R404R 0.35 TCGA-BR-4361-01 6 55214923 55214923 T C GFRAL Missense_Mutation p.L117P 0.34 deleterious(0.03) benign(0.043) TCGA-BR-4361-01 6 56484643 56484643 T - DST Intron 0.32 TCGA-BR-4361-01 6 57048631 57048631 C T BAG2 Silent p.T93T 0.33 TCGA-BR-4361-01 6 6007054 6007054 A - NRN1 5'UTR 0.28 TCGA-BR-4361-01 6 72011356 72011356 G A OGFRL1 Silent p.S320S 0.36 TCGA-BR-4361-01 6 7231588 7231588 G A RREB1 Missense_Mutation p.V1086M 0.24 deleterious(0.04) benign(0.135) TCGA-BR-4361-01 6 74072843 74072843 C T KHDC3L Silent p.H65H 0.29 TCGA-BR-4361-01 6 74138431 74138431 C A MB21D1 Splice_Site p.X406_splice 0.25 TCGA-BR-4361-01 6 74171709 74171709 A G MTO1 Silent p.G44G 0.16 TCGA-BR-4361-01 6 74517820 74517820 G A CD109 Silent p.V1068V 0.26 TCGA-BR-4361-01 6 75798835 75798835 C A COL12A1 Silent p.L2999L 0.15 TCGA-BR-4361-01 6 7580103 7580103 A - DSP Frame_Shift_Del p.E1229Rfs*21 0.30 TCGA-BR-4361-01 6 7580509 7580509 A - DSP Frame_Shift_Del p.N1364Ifs*32 0.24 TCGA-BR-4361-01 6 75857443 75857443 A G COL12A1 Silent p.Y1455Y 0.34 TCGA-BR-4361-01 6 76782331 76782331 G A IMPG1 5'UTR 0.50 TCGA-BR-4361-01 6 7880652 7880652 C T BMP6 3'UTR 0.12 TCGA-BR-4361-01 6 7883316 7883316 A G TXNDC5 3'UTR 0.34 TCGA-BR-4361-01 6 7904900 7904900 T C TXNDC5 Missense_Mutation p.N107S 0.08 deleterious(0.03) probably_damaging(0.998) TCGA-BR-4361-01 6 79726343 79726343 G A PHIP Missense_Mutation p.R385C 0.30 deleterious(0) probably_damaging(0.995) TCGA-BR-4361-01 6 80406276 80406276 A G SH3BGRL2 Silent p.A102A 0.29 TCGA-BR-4361-01 6 80881073 80881074 - T BCKDHB Frame_Shift_Ins p.E239* 0.24 TCGA-BR-4361-01 6 83075864 83075864 A G TPBG Missense_Mutation p.M396V 0.40 deleterious(0.01) possibly_damaging(0.761) TCGA-BR-4361-01 6 83838791 83838791 C A DOPEY1 Silent p.S635S 0.08 TCGA-BR-4361-01 6 83891632 83891632 C T PGM3 Missense_Mutation p.E232K 0.28 tolerated(0.92) benign(0.004) TCGA-BR-4361-01 6 83905673 83905673 C T RWDD2A Silent p.C187C 0.06 TCGA-BR-4361-01 6 83926226 83926226 A G ME1 Silent p.I513I 0.06 TCGA-BR-4361-01 6 8430202 8430202 G A SLC35B3 Silent p.D64D 0.28 TCGA-BR-4361-01 6 89888623 89888623 G A GABRR1 Missense_Mutation p.P436S 0.25 tolerated(1) benign(0.002) TCGA-BR-4361-01 6 90024914 90024914 C A GABRR2 5'UTR 0.33 TCGA-BR-4361-01 6 90409955 90409955 T C MDN1 Silent p.S2899S 0.05 TCGA-BR-4361-01 6 90415853 90415853 A - MDN1 Frame_Shift_Del p.F2691Lfs*7 0.25 TCGA-BR-4361-01 6 90428119 90428119 T C MDN1 Silent p.R2183R 0.11 TCGA-BR-4361-01 6 90504397 90504397 T C MDN1 Silent p.A151A 0.25 TCGA-BR-4361-01 6 90660168 90660168 C T BACH2 Missense_Mutation p.G553R 0.29 tolerated(0.11) probably_damaging(0.968) TCGA-BR-4361-01 6 91263240 91263240 G A MAP3K7 Missense_Mutation p.R225C 0.30 deleterious(0.02) probably_damaging(0.989) TCGA-BR-4361-01 6 91269917 91269917 T C MAP3K7 Silent p.E120E 0.38 TCGA-BR-4361-01 6 94120077 94120077 A G EPHA7 Intron 0.27 TCGA-BR-4361-01 6 9933117 9933117 C T OFCC1 Missense_Mutation p.D48N 0.28 deleterious(0.04) possibly_damaging(0.542) TCGA-BR-4361-01 6 99894017 99894017 T C USP45 Missense_Mutation p.Y544C 0.24 tolerated(0.19) benign(0.011) TCGA-BR-4361-01 7 100028068 100028068 G - MEPCE Frame_Shift_Del p.G145Afs*11 0.33 TCGA-BR-4361-01 7 100160555 100160555 A C AGFG2 Missense_Mutation p.N386T 0.21 deleterious(0.02) benign(0.271) TCGA-BR-4361-01 7 100172795 100172795 C T LRCH4 Missense_Mutation p.V663I 0.18 tolerated(0.58) unknown(0) TCGA-BR-4361-01 7 100218519 100218519 C T TFR2 Silent p.A789A 0.27 TCGA-BR-4361-01 7 100285025 100285025 G A GIGYF1 Silent p.R126R 0.30 TCGA-BR-4361-01 7 100352870 100352870 G A ZAN Missense_Mutation p.R1049H 0.28 unknown(0) TCGA-BR-4361-01 7 100414922 100414922 G A EPHB4 Silent p.L494L 0.35 TCGA-BR-4361-01 7 100551402 100551402 C T MUC3A Silent p.G51G 0.29 TCGA-BR-4361-01 7 100684691 100684691 A G MUC17 Missense_Mutation p.T3332A 0.31 possibly_damaging(0.708) TCGA-BR-4361-01 7 100866977 100866977 T C ZNHIT1 Silent p.P99P 0.28 TCGA-BR-4361-01 7 102952792 102952792 T C PMPCB 3'UTR 0.33 TCGA-BR-4361-01 7 102962467 102962467 C T DNAJC2 Missense_Mutation p.R332K 0.07 tolerated(0.66) benign(0.003) TCGA-BR-4361-01 7 104707214 104707214 C T KMT2E Missense_Mutation p.H153Y 0.13 deleterious_low_confidence(0) benign(0.415) TCGA-BR-4361-01 7 105122810 105122810 T - PUS7 Frame_Shift_Del p.N333Tfs*3 0.33 TCGA-BR-4361-01 7 105148983 105148983 T C PUS7 Intron 0.35 TCGA-BR-4361-01 7 106513320 106513320 T C PIK3CG Silent p.L742L 0.34 TCGA-BR-4361-01 7 107114677 107114677 A G GPR22 Missense_Mutation p.S58G 0.10 tolerated(0.13) probably_damaging(0.989) TCGA-BR-4361-01 7 11022426 11022426 A - PHF14 Frame_Shift_Del p.K182Nfs*19 0.31 TCGA-BR-4361-01 7 1131177 1131177 T C GPER1 5'UTR 0.50 TCGA-BR-4361-01 7 113518397 113518398 - A PPP1R3A Frame_Shift_Ins p.S917Ffs*6 0.23 TCGA-BR-4361-01 7 113558625 113558625 T C PPP1R3A Missense_Mutation p.K143E 0.26 deleterious(0.01) probably_damaging(0.971) TCGA-BR-4361-01 7 116199315 116199315 C T CAV1 Missense_Mutation p.R171C 0.22 deleterious(0) probably_damaging(0.952) TCGA-BR-4361-01 7 116849978 116849978 T C ST7 Silent p.C464C 0.27 TCGA-BR-4361-01 7 117374995 117374995 C A CTTNBP2 Missense_Mutation p.R1283M 0.24 deleterious(0) probably_damaging(0.999) TCGA-BR-4361-01 7 117432544 117432544 T A CTTNBP2 Missense_Mutation p.T236S 0.07 tolerated(0.07) possibly_damaging(0.777) TCGA-BR-4361-01 7 121651002 121651002 A G PTPRZ1 Silent p.S634S 0.20 TCGA-BR-4361-01 7 122821124 122821124 A G SLC13A1 Missense_Mutation p.V44A 0.22 deleterious(0.01) benign(0.423) TCGA-BR-4361-01 7 124467346 124467346 T C POT1 Silent p.V536V 0.10 TCGA-BR-4361-01 7 124482958 124482958 C T POT1 Missense_Mutation p.A356T 0.23 deleterious(0.04) benign(0.005) TCGA-BR-4361-01 7 127014068 127014068 T - ZNF800 Frame_Shift_Del p.K441Rfs*61 0.31 TCGA-BR-4361-01 7 128486164 128486164 T C FLNC Missense_Mutation p.V1304A 0.24 deleterious(0) benign(0.115) TCGA-BR-4361-01 7 130021682 130021682 C T CPA1 Missense_Mutation p.A120V 0.24 tolerated(0.12) benign(0.018) TCGA-BR-4361-01 7 131864640 131864640 T C PLXNA4 Missense_Mutation p.Y1227C 0.16 deleterious(0.02) possibly_damaging(0.708) TCGA-BR-4361-01 7 131895801 131895801 C T PLXNA4 Silent p.G733G 0.23 TCGA-BR-4361-01 7 135333276 135333276 G A NUP205 Missense_Mutation p.R2004H 0.28 deleterious(0.01) benign(0.359) TCGA-BR-4361-01 7 138394461 138394461 A - ATP6V0A4 Frame_Shift_Del p.F779Lfs*10 0.31 TCGA-BR-4361-01 7 138522647 138522647 C T KIAA1549 3'UTR 0.15 TCGA-BR-4361-01 7 138579128 138579128 A C KIAA1549 Missense_Mutation p.F1331C 0.06 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 7 139281496 139281496 T C HIPK2 Missense_Mutation p.D895G 0.26 deleterious(0) possibly_damaging(0.858) TCGA-BR-4361-01 7 139281517 139281517 A T HIPK2 Missense_Mutation p.I888N 0.31 deleterious(0) probably_damaging(0.999) TCGA-BR-4361-01 7 140389471 140389471 C A ADCK2 Silent p.T544T 0.23 TCGA-BR-4361-01 7 140477841 140477841 T C BRAF Silent p.A489A 0.08 TCGA-BR-4361-01 7 141424039 141424039 A G WEE2 Silent p.G395G 0.28 TCGA-BR-4361-01 7 141672607 141672607 C T TAS2R38 Missense_Mutation p.A295T 0.14 tolerated(0.08) possibly_damaging(0.724) TCGA-BR-4361-01 7 141805634 141805634 T C MGAM Silent p.T1839T 0.34 TCGA-BR-4361-01 7 141871910 141871910 T C RP11-1220K2.2 Missense_Mutation p.S1122P 0.25 probably_damaging(0.977) TCGA-BR-4361-01 7 142575704 142575704 C A TRPV6 Missense_Mutation p.E68D 0.05 tolerated(0.52) benign(0) TCGA-BR-4361-01 7 143078656 143078656 G A ZYX 5'UTR 0.26 TCGA-BR-4361-01 7 144077125 144077125 A G ARHGEF5 Silent p.L1590L 0.05 TCGA-BR-4361-01 7 146829377 146829377 C A CNTNAP2 Missense_Mutation p.P375H 0.10 deleterious(0) benign(0.264) TCGA-BR-4361-01 7 14733738 14733738 T C DGKB Missense_Mutation p.T225A 0.30 deleterious(0.03) possibly_damaging(0.574) TCGA-BR-4361-01 7 148112646 148112646 A G CNTNAP2 Missense_Mutation p.M1312V 0.05 tolerated(0.05) benign(0.002) TCGA-BR-4361-01 7 148489850 148489850 G A CUL1 Silent p.Q613Q 0.27 TCGA-BR-4361-01 7 148768111 148768111 G A ZNF786 Missense_Mutation p.R585C 0.36 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 7 14880921 14880921 T C DGKB 5'UTR 0.43 TCGA-BR-4361-01 7 148876131 148876131 C A ZNF398 Silent p.S389S 0.30 TCGA-BR-4361-01 7 148921393 148921393 G A ZNF282 Missense_Mutation p.C557Y 0.40 tolerated(1) probably_damaging(0.995) TCGA-BR-4361-01 7 149523542 149523543 - C SSPO RNA 0.29 TCGA-BR-4361-01 7 149545162 149545162 G A ZNF862 Missense_Mutation p.A194T 0.34 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-BR-4361-01 7 149559482 149559482 A G ZNF862 Missense_Mutation p.Y1078C 0.38 deleterious(0) probably_damaging(0.991) TCGA-BR-4361-01 7 149575849 149575849 C A ATP6V0E2 Intron 0.30 TCGA-BR-4361-01 7 150936822 150936822 G A SMARCD3 Missense_Mutation p.T395M 0.50 deleterious(0.03) probably_damaging(0.962) TCGA-BR-4361-01 7 151074269 151074269 A G NUB1 Silent p.L626L 0.30 TCGA-BR-4361-01 7 152345769 152345769 T - XRCC2 Frame_Shift_Del p.K267Nfs*30 0.27 TCGA-BR-4361-01 7 152345981 152345981 T C XRCC2 Missense_Mutation p.T197A 0.10 tolerated(0.92) benign(0.004) TCGA-BR-4361-01 7 154738278 154738278 A G PAXIP1 Missense_Mutation p.L1026S 0.24 deleterious(0) unknown(0) TCGA-BR-4361-01 7 156437236 156437236 C T RNF32 Missense_Mutation p.A20V 0.15 deleterious(0) probably_damaging(0.997) TCGA-BR-4361-01 7 156469025 156469025 G A RNF32 Intron 0.52 TCGA-BR-4361-01 7 156742867 156742867 C T NOM1 Missense_Mutation p.P146S 0.47 tolerated(0.39) benign(0.014) TCGA-BR-4361-01 7 158726880 158726880 G A WDR60 Silent p.L869L 0.24 TCGA-BR-4361-01 7 16317832 16317832 A C ISPD Missense_Mutation p.I285M 0.18 deleterious(0.03) benign(0.299) TCGA-BR-4361-01 7 17861218 17861218 G A SNX13 Missense_Mutation p.R587W 0.36 deleterious(0) probably_damaging(0.999) TCGA-BR-4361-01 7 20738131 20738131 T G ABCB5 Silent p.T704T 0.25 TCGA-BR-4361-01 7 20782592 20782592 T C ABCB5 Silent p.S1039S 0.39 TCGA-BR-4361-01 7 21469680 21469680 A T SP4 Missense_Mutation p.Q299H 0.22 tolerated(0.19) probably_damaging(0.948) TCGA-BR-4361-01 7 23224695 23224695 A G NUPL2 Missense_Mutation p.N43S 0.38 tolerated(0.5) benign(0.046) TCGA-BR-4361-01 7 2472447 2472447 G T CHST12 Missense_Mutation p.R58M 0.35 deleterious(0.03) benign(0.009) TCGA-BR-4361-01 7 2583482 2583482 C A BRAT1 Missense_Mutation p.G182V 0.31 tolerated(0.28) benign(0.01) TCGA-BR-4361-01 7 27872297 27872297 A T JAZF1 3'UTR 0.38 TCGA-BR-4361-01 7 28996482 28996482 G - AC005013.5 5'Flank 0.27 TCGA-BR-4361-01 7 29111511 29111511 C T CPVL Missense_Mutation p.G248S 0.26 tolerated(0.22) possibly_damaging(0.819) TCGA-BR-4361-01 7 29152370 29152370 C T CPVL Missense_Mutation p.V80M 0.35 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 7 2968323 2968323 G - CARD11 Frame_Shift_Del p.R555Gfs*45 0.52 TCGA-BR-4361-01 7 29994974 29994974 G A SCRN1 Silent p.C74C 0.30 TCGA-BR-4361-01 7 30492144 30492144 G A NOD1 Missense_Mutation p.R297C 0.40 deleterious(0.02) possibly_damaging(0.81) TCGA-BR-4361-01 7 31126133 31126133 T C ADCYAP1R1 Missense_Mutation p.Y269H 0.14 deleterious(0) possibly_damaging(0.477) TCGA-BR-4361-01 7 31792837 31792837 A - PDE1C 3'UTR 0.30 TCGA-BR-4361-01 7 36713584 36713584 A G AOAH Missense_Mutation p.L85S 0.30 tolerated(0.29) benign(0.299) TCGA-BR-4361-01 7 38431519 38431519 C T AMPH Missense_Mutation p.E570K 0.30 tolerated(0.18) benign(0.029) TCGA-BR-4361-01 7 42005485 42005485 C T GLI3 Silent p.S1062S 0.41 TCGA-BR-4361-01 7 42006006 42006006 C T GLI3 Missense_Mutation p.V889M 0.34 tolerated(0.11) benign(0.1) TCGA-BR-4361-01 7 42949523 42949524 CT - C7orf25 Frame_Shift_Del p.R384Gfs*6 0.34 TCGA-BR-4361-01 7 4308201 4308201 C T SDK1 3'UTR 0.30 TCGA-BR-4361-01 7 43351483 43351483 A G HECW1 Missense_Mutation p.N50S 0.24 tolerated_low_confidence(1) benign(0.001) TCGA-BR-4361-01 7 43484721 43484721 G A HECW1 Silent p.T650T 0.11 TCGA-BR-4361-01 7 43840132 43840132 G A BLVRA Missense_Mutation p.V141M 0.09 tolerated(0.11) benign(0.013) TCGA-BR-4361-01 7 44365064 44365064 C T CAMK2B 5'UTR 0.50 TCGA-BR-4361-01 7 47336680 47336681 - T TNS3 Frame_Shift_Ins p.A1226Sfs*7 0.26 TCGA-BR-4361-01 7 4800727 4800727 A G FOXK1 Missense_Mutation p.T577A 0.30 tolerated_low_confidence(0.2) benign(0.012) TCGA-BR-4361-01 7 48312524 48312524 C T ABCA13 Silent p.F1087F 0.32 TCGA-BR-4361-01 7 4856942 4856942 G A RADIL Silent p.S552S 0.26 TCGA-BR-4361-01 7 50514060 50514060 T - FIGNL1 Frame_Shift_Del p.K309Sfs*16 0.24 TCGA-BR-4361-01 7 5567755 5567755 G A ACTB Silent p.D288D 0.30 TCGA-BR-4361-01 7 55755504 55755504 G A RNU6-389P 3'Flank 0.38 TCGA-BR-4361-01 7 5692060 5692060 T C RNF216 Missense_Mutation p.K715E 0.35 tolerated(0.09) probably_damaging(0.996) TCGA-BR-4361-01 7 6027153 6027153 C T PMS2 Missense_Mutation p.V415M 0.33 tolerated(0.55) benign(0.011) TCGA-BR-4361-01 7 6189299 6189299 A G USP42 Missense_Mutation p.N491S 0.08 tolerated(0.56) benign(0.007) TCGA-BR-4361-01 7 6844665 6844665 T A CCZ1B Missense_Mutation p.D337V 0.24 deleterious(0) possibly_damaging(0.769) TCGA-BR-4361-01 7 72178733 72178733 G A TYW1B Missense_Mutation p.R32C 0.27 deleterious(0) possibly_damaging(0.711) TCGA-BR-4361-01 7 73933830 73933830 C T GTF2IRD1 Missense_Mutation p.H265Y 0.37 tolerated(0.06) possibly_damaging(0.622) TCGA-BR-4361-01 7 74564312 74564312 A - GTF2IRD2B Frame_Shift_Del p.N687Tfs*34 0.27 TCGA-BR-4361-01 7 75613126 75613126 A G POR Missense_Mutation p.I340V 0.24 tolerated(0.21) benign(0.001) TCGA-BR-4361-01 7 75614412 75614412 C T POR Missense_Mutation p.H429Y 0.34 deleterious(0.01) possibly_damaging(0.683) TCGA-BR-4361-01 7 769478 769478 C T HEATR2 Silent p.V258V 0.27 TCGA-BR-4361-01 7 77210806 77210806 G A PTPN12 Missense_Mutation p.A91T 0.18 deleterious(0) probably_damaging(0.994) TCGA-BR-4361-01 7 77567056 77567056 C T PHTF2 Silent p.H422H 0.27 TCGA-BR-4361-01 7 781046 781046 A G HEATR2 Missense_Mutation p.D323G 0.21 deleterious(0) probably_damaging(0.947) TCGA-BR-4361-01 7 80295776 80295776 A G CD36 Missense_Mutation p.E240G 0.10 tolerated(0.17) benign(0.005) TCGA-BR-4361-01 7 82595551 82595551 T - PCLO Frame_Shift_Del p.I1185Ffs*5 0.23 TCGA-BR-4361-01 7 82785212 82785212 A T PCLO Missense_Mutation p.S249T 0.17 unknown(0) TCGA-BR-4361-01 7 83758471 83758471 C T SEMA3A Missense_Mutation p.D101N 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-BR-4361-01 7 86416344 86416344 T C GRM3 Silent p.C412C 0.31 TCGA-BR-4361-01 7 86493774 86493775 - T GRM3 3'UTR 0.32 TCGA-BR-4361-01 7 87780626 87780626 T C ADAM22 Missense_Mutation p.W558R 0.30 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 7 889172 889172 A G SUN1 Intron 0.10 TCGA-BR-4361-01 7 89939383 89939383 T C C7orf63 Missense_Mutation p.V886A 0.06 tolerated(0.1) benign(0.325) TCGA-BR-4361-01 7 90042450 90042450 G T CLDN12 Missense_Mutation p.V154F 0.25 tolerated(0.43) benign(0.002) TCGA-BR-4361-01 7 91736658 91736658 A G AKAP9 Missense_Mutation p.Y3823C 0.29 probably_damaging(0.922) TCGA-BR-4361-01 7 92164313 92164313 A G RBM48 Intron 0.11 TCGA-BR-4361-01 7 92732009 92732009 C T SAMD9 Nonsense_Mutation p.W1134* 0.31 TCGA-BR-4361-01 7 92761452 92761452 A G SAMD9L Missense_Mutation p.L1278P 0.28 deleterious(0) probably_damaging(0.996) TCGA-BR-4361-01 7 92763789 92763789 T C SAMD9L Missense_Mutation p.N499S 0.31 deleterious(0) probably_damaging(0.999) TCGA-BR-4361-01 7 94057063 94057063 A C COL1A2 Missense_Mutation p.K1131T 0.27 unknown(0) TCGA-BR-4361-01 7 95751045 95751045 C T SLC25A13 Missense_Mutation p.R589Q 0.26 deleterious(0.01) probably_damaging(0.952) TCGA-BR-4361-01 7 95864143 95864143 T C SLC25A13 Missense_Mutation p.D100G 0.13 deleterious(0) probably_damaging(0.994) TCGA-BR-4361-01 7 96318150 96318150 T - SHFM1 3'UTR 0.22 TCGA-BR-4361-01 7 97866138 97866138 C T TECPR1 Silent p.A377A 0.30 TCGA-BR-4361-01 7 98552728 98552728 A G TRRAP Missense_Mutation p.H1906R 0.06 possibly_damaging(0.707) TCGA-BR-4361-01 7 98589802 98589802 A G TRRAP Missense_Mutation p.T3271A 0.32 possibly_damaging(0.685) TCGA-BR-4361-01 7 98957253 98957253 G A ARPC1A Missense_Mutation p.S292N 0.35 tolerated(0.26) benign(0.008) TCGA-BR-4361-01 7 99042427 99042427 T C CPSF4 Missense_Mutation p.V40A 0.22 tolerated(0.07) benign(0.275) TCGA-BR-4361-01 7 99219142 99219142 C T ZSCAN25 Silent p.T178T 0.31 TCGA-BR-4361-01 7 99305499 99305499 T C CYP3A7 Missense_Mutation p.N451S 0.10 tolerated(0.86) benign(0.206) TCGA-BR-4361-01 7 99489911 99489913 AGA - TRIM4 In_Frame_Del p.F459del 0.35 TCGA-BR-4361-01 7 99705994 99705994 G A TAF6 Missense_Mutation p.T522M 0.40 deleterious(0) probably_damaging(0.94) TCGA-BR-4361-01 7 99757831 99757831 G A GAL3ST4 Missense_Mutation p.A394V 0.06 tolerated(0.11) benign(0.056) TCGA-BR-4361-01 8 101018269 101018270 TT - RGS22 Frame_Shift_Del p.K810Rfs*8 0.21 TCGA-BR-4361-01 8 102731641 102731641 C T NCALD Missense_Mutation p.D73N 0.23 deleterious(0) probably_damaging(0.999) TCGA-BR-4361-01 8 103287984 103287984 T C UBR5 Silent p.E2194E 0.17 TCGA-BR-4361-01 8 103289349 103289349 T - UBR5 Frame_Shift_Del p.E2121Kfs*28 0.47 TCGA-BR-4361-01 8 103323552 103323552 G A UBR5 Missense_Mutation p.A864V 0.20 tolerated(1) probably_damaging(0.97) TCGA-BR-4361-01 8 103324440 103324440 C T UBR5 Missense_Mutation p.D729N 0.19 deleterious(0) probably_damaging(0.981) TCGA-BR-4361-01 8 103664435 103664435 T A KLF10 Missense_Mutation p.N76I 0.32 tolerated(0.05) benign(0.149) TCGA-BR-4361-01 8 10383088 10383088 C T PRSS55 5'UTR 0.05 TCGA-BR-4361-01 8 105509440 105509440 T G LRP12 Missense_Mutation p.N447T 0.07 deleterious(0.01) probably_damaging(0.989) TCGA-BR-4361-01 8 105509717 105509717 A - LRP12 Frame_Shift_Del p.C355Vfs*5 0.21 TCGA-BR-4361-01 8 10583646 10583646 G - SOX7 Frame_Shift_Del p.L309Wfs*14 0.30 TCGA-BR-4361-01 8 107695466 107695466 T C OXR1 Missense_Mutation p.F116L 0.10 deleterious(0) probably_damaging(0.926) TCGA-BR-4361-01 8 107719150 107719150 T A OXR1 Missense_Mutation p.N468K 0.06 tolerated(0.91) benign(0.017) TCGA-BR-4361-01 8 10782233 10782233 C T XKR6 Missense_Mutation p.R291H 0.18 tolerated(0.28) probably_damaging(0.998) TCGA-BR-4361-01 8 108263997 108263997 G T ANGPT1 3'UTR 0.25 TCGA-BR-4361-01 8 110348433 110348433 G A ENY2 Missense_Mutation p.R28H 0.25 deleterious(0.02) benign(0.172) TCGA-BR-4361-01 8 110394751 110394751 A G PKHD1L1 Missense_Mutation p.E123G 0.25 tolerated(0.07) benign(0.253) TCGA-BR-4361-01 8 113237026 113237026 A G CSMD3 Silent p.L3700L 0.25 TCGA-BR-4361-01 8 113237134 113237134 C A CSMD3 Nonsense_Mutation p.G3664* 0.25 TCGA-BR-4361-01 8 113259321 113259321 G T CSMD3 Missense_Mutation p.L3384I 0.28 tolerated(0.23) benign(0.291) TCGA-BR-4361-01 8 114111072 114111072 T C CSMD3 Missense_Mutation p.D277G 0.15 tolerated(0.25) possibly_damaging(0.898) TCGA-BR-4361-01 8 11637208 11637208 G A NEIL2 Silent p.K80K 0.21 TCGA-BR-4361-01 8 11637331 11637331 C T NEIL2 Silent p.D121D 0.23 TCGA-BR-4361-01 8 118541046 118541046 G A MED30 Missense_Mutation p.E112K 0.04 deleterious(0) possibly_damaging(0.604) TCGA-BR-4361-01 8 11995417 11995417 C A USP17L2 Missense_Mutation p.D285Y 0.08 deleterious(0.01) probably_damaging(0.987) TCGA-BR-4361-01 8 120596200 120596200 A G ENPP2 Splice_Site p.X537_splice 0.04 TCGA-BR-4361-01 8 120793304 120793304 A G TAF2 Missense_Mutation p.F748L 0.19 deleterious(0.01) possibly_damaging(0.533) TCGA-BR-4361-01 8 120940664 120940664 T C DEPTOR Silent p.V49V 0.08 TCGA-BR-4361-01 8 120940800 120940800 C A DEPTOR Silent p.R95R 0.21 TCGA-BR-4361-01 8 121256232 121256232 G A COL14A1 Missense_Mutation p.A822T 0.24 tolerated(0.05) possibly_damaging(0.788) TCGA-BR-4361-01 8 122626645 122626645 T A HAS2 Missense_Mutation p.I455F 0.03 deleterious(0.01) possibly_damaging(0.876) TCGA-BR-4361-01 8 12285159 12285159 G T FAM86B2 Intron 0.16 TCGA-BR-4361-01 8 123964414 123964414 A G ZHX2 Missense_Mutation p.T222A 0.06 tolerated(1) benign(0.001) TCGA-BR-4361-01 8 124195493 124195493 T C FAM83A Missense_Mutation p.S133P 0.04 tolerated(0.08) probably_damaging(0.966) TCGA-BR-4361-01 8 124516885 124516885 T C FBXO32 Missense_Mutation p.T313A 0.07 deleterious(0.02) probably_damaging(0.997) TCGA-BR-4361-01 8 12878636 12878636 C T KIAA1456 Missense_Mutation p.H150Y 0.28 deleterious(0.01) benign(0.386) TCGA-BR-4361-01 8 12957997 12957997 G - DLC1 Frame_Shift_Del p.R617Gfs*37 0.22 TCGA-BR-4361-01 8 131848574 131848574 G A ADCY8 Missense_Mutation p.T875I 0.22 tolerated(0.33) possibly_damaging(0.521) TCGA-BR-4361-01 8 133823395 133823395 T - PHF20L1 Intron 0.19 TCGA-BR-4361-01 8 133894176 133894176 A G TG Missense_Mutation p.H236R 0.19 deleterious(0) benign(0.265) TCGA-BR-4361-01 8 133906034 133906034 G A TG Missense_Mutation p.G954E 0.06 deleterious(0.05) possibly_damaging(0.674) TCGA-BR-4361-01 8 135612914 135612914 A - ZFAT Intron 0.17 TCGA-BR-4361-01 8 135614731 135614731 G A ZFAT Missense_Mutation p.R411C 0.24 deleterious(0) probably_damaging(0.999) TCGA-BR-4361-01 8 135622749 135622749 T C ZFAT Missense_Mutation p.I200V 0.22 tolerated(0.4) benign(0.005) TCGA-BR-4361-01 8 139153555 139153555 A G FAM135B Missense_Mutation p.S1226P 0.18 deleterious(0) probably_damaging(0.997) TCGA-BR-4361-01 8 141559309 141559309 C - AGO2 Frame_Shift_Del p.A498Rfs*11 0.15 TCGA-BR-4361-01 8 141745347 141745347 T C PTK2 Intron 0.16 TCGA-BR-4361-01 8 142151514 142151514 G - DENND3 Intron 0.31 TCGA-BR-4361-01 8 142225875 142225875 A G SLC45A4 Missense_Mutation p.Y591H 0.08 deleterious(0) probably_damaging(0.996) TCGA-BR-4361-01 8 143395755 143395755 C T TSNARE1 Missense_Mutation p.G374D 0.09 deleterious(0.05) possibly_damaging(0.529) TCGA-BR-4361-01 8 143623648 143623648 C T BAI1 Silent p.A1351A 0.25 TCGA-BR-4361-01 8 144332656 144332656 G A ZFP41 3'UTR 0.08 TCGA-BR-4361-01 8 144557662 144557662 G A ZC3H3 Silent p.C603C 0.26 TCGA-BR-4361-01 8 144808461 144808461 A G FAM83H Missense_Mutation p.V1057A 0.13 tolerated(1) benign(0.001) TCGA-BR-4361-01 8 144810850 144810850 C T FAM83H Missense_Mutation p.V261M 0.28 deleterious(0.01) probably_damaging(0.99) TCGA-BR-4361-01 8 145107434 145107434 G A OPLAH Missense_Mutation p.A1074V 0.32 deleterious(0) probably_damaging(0.996) TCGA-BR-4361-01 8 145160998 145160998 G A MAF1 Missense_Mutation p.G78S 0.20 tolerated(0.16) benign(0.094) TCGA-BR-4361-01 8 145235329 145235329 G A MROH1 Silent p.A155A 0.25 TCGA-BR-4361-01 8 145533580 145533580 G A HSF1 Silent p.K162K 0.19 TCGA-BR-4361-01 8 145579642 145579642 T C FBXL6 Silent p.T486T 0.19 TCGA-BR-4361-01 8 145583653 145583653 G T SLC52A2 Silent p.V167V 0.23 TCGA-BR-4361-01 8 145623173 145623173 T C CPSF1 Missense_Mutation p.H690R 0.11 tolerated(0.35) benign(0.063) TCGA-BR-4361-01 8 145623272 145623272 A G CPSF1 Missense_Mutation p.V657A 0.14 tolerated(0.16) benign(0.07) TCGA-BR-4361-01 8 145638262 145638262 C T SLC39A4 Missense_Mutation p.A566T 0.22 deleterious(0.04) possibly_damaging(0.611) TCGA-BR-4361-01 8 145737617 145737617 T C RECQL4 Missense_Mutation p.D1049G 0.26 deleterious(0) probably_damaging(0.998) TCGA-BR-4361-01 8 1497659 1497659 A G DLGAP2 Missense_Mutation p.N267S 0.19 tolerated(0.24) benign(0.012) TCGA-BR-4361-01 8 1497743 1497743 C T DLGAP2 Missense_Mutation p.T295M 0.37 tolerated(0.08) probably_damaging(0.999) TCGA-BR-4361-01 8 15508249 15508249 T G TUSC3 Missense_Mutation p.Y118D 0.22 deleterious(0) possibly_damaging(0.763) TCGA-BR-4361-01 8 15615346 15615346 A - TUSC3 3'UTR 0.21 TCGA-BR-4361-01 8 1649450 1649450 C T DLGAP2 Missense_Mutation p.R936C 0.25 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 8 17053124 17053124 A G ZDHHC2 Missense_Mutation p.M122V 0.21 tolerated(0.51) benign(0.002) TCGA-BR-4361-01 8 17400829 17400829 C T SLC7A2 Missense_Mutation p.S34L 0.19 tolerated_low_confidence(0.28) benign(0) TCGA-BR-4361-01 8 17601244 17601244 A G MTUS1 Missense_Mutation p.L719S 0.12 deleterious(0.02) benign(0.12) TCGA-BR-4361-01 8 17810504 17810504 G A PCM1 Missense_Mutation p.R366K 0.23 deleterious(0.02) probably_damaging(0.995) TCGA-BR-4361-01 8 19363333 19363333 G A CSGALNACT1 Missense_Mutation p.R5C 0.12 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BR-4361-01 8 20110740 20110740 G A LZTS1 Silent p.D234D 0.29 TCGA-BR-4361-01 8 21833943 21833943 A G XPO7 Missense_Mutation p.N225S 0.06 tolerated(0.06) benign(0.024) TCGA-BR-4361-01 8 21904139 21904139 G A FGF17 Missense_Mutation p.G118R 0.21 deleterious(0) probably_damaging(0.992) TCGA-BR-4361-01 8 21978590 21978590 C T HR Silent p.P785P 0.23 TCGA-BR-4361-01 8 24188715 24188715 T - ADAM28 Frame_Shift_Del p.F387Lfs*63 0.20 TCGA-BR-4361-01 8 24324356 24324356 T C ADAM7 Missense_Mutation p.V145A 0.24 deleterious(0) possibly_damaging(0.755) TCGA-BR-4361-01 8 26513310 26513310 T G DPYSL2 3'UTR 0.22 TCGA-BR-4361-01 8 26722095 26722095 G A ADRA1A Missense_Mutation p.P131L 0.26 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 8 27507229 27507229 C T SCARA3 Silent p.A6A 0.14 TCGA-BR-4361-01 8 27516732 27516732 C T SCARA3 Missense_Mutation p.R349C 0.15 deleterious(0) probably_damaging(0.964) TCGA-BR-4361-01 8 30332344 30332344 A G RBPMS Missense_Mutation p.E39G 0.26 deleterious(0) probably_damaging(0.996) TCGA-BR-4361-01 8 30361897 30361898 - A RBPMS Frame_Shift_Ins p.N115Kfs*20 0.17 TCGA-BR-4361-01 8 30657228 30657228 C T PPP2CB Missense_Mutation p.R49H 0.17 tolerated(0.15) benign(0.001) TCGA-BR-4361-01 8 30694355 30694355 T C TEX15 Missense_Mutation p.N2766D 0.25 tolerated(0.45) benign(0.003) TCGA-BR-4361-01 8 33454979 33454979 G A DUSP26 Missense_Mutation p.R19W 0.21 deleterious(0.01) probably_damaging(0.973) TCGA-BR-4361-01 8 35401946 35401946 A G UNC5D Intron 0.20 TCGA-BR-4361-01 8 35406931 35406931 C T UNC5D Silent p.C75C 0.28 TCGA-BR-4361-01 8 36644862 36644862 A G KCNU1 Silent p.V78V 0.17 TCGA-BR-4361-01 8 37696520 37696520 T C GPR124 Missense_Mutation p.L769P 0.07 deleterious(0) probably_damaging(0.999) TCGA-BR-4361-01 8 37729770 37729770 G A RAB11FIP1 Silent p.D850D 0.06 TCGA-BR-4361-01 8 37730180 37730181 - T RAB11FIP1 Frame_Shift_Ins p.Q714Tfs*22 0.24 TCGA-BR-4361-01 8 37756986 37756986 G A RAB11FIP1 5'Flank 0.17 TCGA-BR-4361-01 8 38124712 38124712 C A PPAPDC1B Intron 0.27 TCGA-BR-4361-01 8 38146075 38146075 T C WHSC1L1 Missense_Mutation p.Y1144C 0.28 deleterious(0) probably_damaging(0.975) TCGA-BR-4361-01 8 41542098 41542098 C T ANK1 Missense_Mutation p.D1542N 0.20 tolerated(0.1) benign(0.008) TCGA-BR-4361-01 8 41798556 41798556 C T KAT6A Missense_Mutation p.R948Q 0.25 benign(0.315) TCGA-BR-4361-01 8 43048914 43048914 C A HGSNAT Silent p.T464T 0.18 TCGA-BR-4361-01 8 52321166 52321166 G A PXDNL Silent p.G1006G 0.40 TCGA-BR-4361-01 8 52758239 52758239 T - PCMTD1 Frame_Shift_Del p.N131Ifs*23 0.22 TCGA-BR-4361-01 8 53073967 53073967 A T ST18 Missense_Mutation p.V521E 0.20 tolerated(1) benign(0.01) TCGA-BR-4361-01 8 56015361 56015361 C T XKR4 Missense_Mutation p.R105W 0.26 deleterious(0) possibly_damaging(0.548) TCGA-BR-4361-01 8 56015787 56015787 T C XKR4 Missense_Mutation p.S247P 0.18 tolerated(0.18) possibly_damaging(0.852) TCGA-BR-4361-01 8 57078885 57078885 A G PLAG1 Missense_Mutation p.S474P 0.15 tolerated(0.33) benign(0) TCGA-BR-4361-01 8 57079206 57079206 C T PLAG1 Missense_Mutation p.V367M 0.27 tolerated(0.29) benign(0) TCGA-BR-4361-01 8 57358316 57358316 T C PENK Intron 0.22 TCGA-BR-4361-01 8 59407183 59407183 T C CYP7A1 Silent p.A307A 0.06 TCGA-BR-4361-01 8 59522202 59522202 C T NSMAF Silent p.T247T 0.20 TCGA-BR-4361-01 8 61765496 61765496 A G CHD7 Missense_Mutation p.H2071R 0.25 possibly_damaging(0.526) TCGA-BR-4361-01 8 623717 623717 T C ERICH1 Missense_Mutation p.D212G 0.15 deleterious(0.03) benign(0.019) TCGA-BR-4361-01 8 6302632 6302632 C T MCPH1 Silent p.C463C 0.21 TCGA-BR-4361-01 8 66619270 66619270 T C MTFR1 Silent p.G181G 0.11 TCGA-BR-4361-01 8 66701258 66701258 A G PDE7A Intron 0.11 TCGA-BR-4361-01 8 67089245 67089245 C T CRH Silent p.E156E 0.24 TCGA-BR-4361-01 8 67488460 67488460 T C MYBL1 Missense_Mutation p.K418E 0.11 tolerated(0.71) benign(0.184) TCGA-BR-4361-01 8 67578127 67578127 A G VCPIP1 Missense_Mutation p.I356T 0.20 tolerated(0.06) possibly_damaging(0.844) TCGA-BR-4361-01 8 67771918 67771918 T - SGK3 3'UTR 0.11 TCGA-BR-4361-01 8 68044279 68044279 G A CSPP1 Silent p.Q592Q 0.24 TCGA-BR-4361-01 8 68334846 68334846 C T CPA6 Missense_Mutation p.G403R 0.27 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 8 69021847 69021847 T C PREX2 Silent p.C1045C 0.25 TCGA-BR-4361-01 8 70585127 70585127 C T SLCO5A1 Missense_Mutation p.A842T 0.17 tolerated_low_confidence(0.34) benign(0.002) TCGA-BR-4361-01 8 70617453 70617453 C T SLCO5A1 Missense_Mutation p.V479I 0.26 tolerated(0.5) benign(0.393) TCGA-BR-4361-01 8 70981471 70981471 C - PRDM14 Frame_Shift_Del p.V209Sfs*85 0.19 TCGA-BR-4361-01 8 71556421 71556421 T C LACTB2 Silent p.E157E 0.03 TCGA-BR-4361-01 8 72127938 72127938 T G EYA1 Missense_Mutation p.E462D 0.09 tolerated(0.33) benign(0.086) TCGA-BR-4361-01 8 72756065 72756065 G A MSC Missense_Mutation p.R117C 0.27 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 8 72950278 72950278 A G TRPA1 Silent p.I775I 0.31 TCGA-BR-4361-01 8 72958792 72958792 T - TRPA1 Frame_Shift_Del p.T673Hfs*23 0.26 TCGA-BR-4361-01 8 72973946 72973946 C T TRPA1 Silent p.E286E 0.18 TCGA-BR-4361-01 8 74888567 74888567 C T TMEM70 Silent p.C17C 0.27 TCGA-BR-4361-01 8 75227698 75227698 G A JPH1 Silent p.A179A 0.20 TCGA-BR-4361-01 8 75272475 75272475 T C GDAP1 Silent p.H138H 0.19 TCGA-BR-4361-01 8 75276726 75276726 A G GDAP1 3'UTR 0.11 TCGA-BR-4361-01 8 77616900 77616900 A G ZFHX4 Missense_Mutation p.N193D 0.21 possibly_damaging(0.486) TCGA-BR-4361-01 8 8234255 8234255 G T SGK223 Missense_Mutation p.P555Q 0.18 probably_damaging(0.999) TCGA-BR-4361-01 8 8560311 8560311 T C CLDN23 Missense_Mutation p.Y135H 0.27 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 8 85799997 85799997 G - RALYL Frame_Shift_Del p.G296Vfs*8 0.22 TCGA-BR-4361-01 8 86041489 86041489 A - LRRCC1 Frame_Shift_Del p.K502Nfs*2 0.21 TCGA-BR-4361-01 8 88885724 88885724 A G DCAF4L2 Missense_Mutation p.L159P 0.27 deleterious(0) probably_damaging(0.968) TCGA-BR-4361-01 8 92307862 92307862 C T SLC26A7 Silent p.G136G 0.22 TCGA-BR-4361-01 8 94746312 94746312 G - RBM12B Frame_Shift_Del p.P776Rfs*111 0.28 TCGA-BR-4361-01 8 94748049 94748049 G A RBM12B Missense_Mutation p.A197V 0.26 deleterious(0.01) probably_damaging(0.998) TCGA-BR-4361-01 8 95178128 95178128 A G CDH17 Silent p.I381I 0.27 TCGA-BR-4361-01 8 95556148 95556148 A G KIAA1429 Missense_Mutation p.V29A 0.14 deleterious(0.01) probably_damaging(0.99) TCGA-BR-4361-01 8 95782684 95782684 A G DPY19L4 Missense_Mutation p.K447E 0.36 tolerated(0.91) benign(0.003) TCGA-BR-4361-01 8 95869047 95869047 T C INTS8 Silent p.L599L 0.03 TCGA-BR-4361-01 8 95892454 95892454 T C INTS8 Missense_Mutation p.Y994H 0.08 deleterious(0) probably_damaging(0.998) TCGA-BR-4361-01 8 98863789 98863789 C A LAPTM4B 3'UTR 0.25 TCGA-BR-4361-01 8 98900443 98900443 C T MATN2 Missense_Mutation p.R39W 0.32 tolerated(0.05) benign(0.003) TCGA-BR-4361-01 8 99019731 99019731 A G MATN2 Missense_Mutation p.D492G 0.05 tolerated(0.27) benign(0.066) TCGA-BR-4361-01 8 99118537 99118537 A G HRSP12 Silent p.G63G 0.21 TCGA-BR-4361-01 9 100119941 100119941 A G CCDC180 Silent p.L1143L 0.31 TCGA-BR-4361-01 9 100767349 100767349 A G ANP32B Missense_Mutation p.Y144C 0.26 deleterious(0.03) possibly_damaging(0.544) TCGA-BR-4361-01 9 100843480 100843480 T C NANS Intron 0.29 TCGA-BR-4361-01 9 100971115 100971115 C T TBC1D2 Missense_Mutation p.R662H 0.35 tolerated(0.56) benign(0.005) TCGA-BR-4361-01 9 101243237 101243237 T C GABBR2 Missense_Mutation p.M259V 0.33 tolerated(0.15) benign(0.01) TCGA-BR-4361-01 9 101706341 101706341 G A COL15A1 5'UTR 0.38 TCGA-BR-4361-01 9 103111562 103111562 A G TEX10 Silent p.A28A 0.36 TCGA-BR-4361-01 9 1055749 1055749 A T DMRT2 Intron 0.30 TCGA-BR-4361-01 9 107361324 107361324 A G OR13C5 Missense_Mutation p.V124A 0.07 deleterious(0.01) benign(0.022) TCGA-BR-4361-01 9 107367363 107367363 C T OR13C2 Silent p.L182L 0.26 TCGA-BR-4361-01 9 112027297 112027297 A T EPB41L4B Missense_Mutation p.F181I 0.17 deleterious(0) probably_damaging(0.91) TCGA-BR-4361-01 9 112542627 112542627 C T PALM2-AKAP2 5'UTR 0.23 TCGA-BR-4361-01 9 114538127 114538127 A G C9orf84 Missense_Mutation p.V65A 0.25 tolerated(0.76) benign(0.011) TCGA-BR-4361-01 9 114986168 114986168 T C PTBP3 Missense_Mutation p.H547R 0.11 deleterious(0.04) benign(0.026) TCGA-BR-4361-01 9 116153209 116153209 T C ALAD Missense_Mutation p.E89G 0.07 tolerated(0.21) benign(0.006) TCGA-BR-4361-01 9 116276764 116276764 T C RGS3 Missense_Mutation p.S502P 0.06 deleterious(0.05) benign(0.01) TCGA-BR-4361-01 9 116823776 116823776 A G AMBP Missense_Mutation p.Y261H 0.37 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 9 116857556 116857556 G A KIF12 Missense_Mutation p.R180W 0.30 deleterious(0) probably_damaging(0.993) TCGA-BR-4361-01 9 117405489 117405489 G A C9orf91 Missense_Mutation p.A309T 0.32 tolerated(0.11) benign(0.002) TCGA-BR-4361-01 9 124064424 124064424 T C GSN Missense_Mutation p.Y110H 0.07 deleterious(0.03) probably_damaging(0.995) TCGA-BR-4361-01 9 125141137 125141137 T C PTGS1 Missense_Mutation p.Y146H 0.12 deleterious(0.02) probably_damaging(0.995) TCGA-BR-4361-01 9 125582652 125582652 G A PDCL Silent p.A206A 0.10 TCGA-BR-4361-01 9 125621378 125621378 T C RC3H2 Missense_Mutation p.Y618C 0.10 deleterious(0.01) probably_damaging(0.993) TCGA-BR-4361-01 9 125673698 125673698 A G ZBTB6 Silent p.C218C 0.25 TCGA-BR-4361-01 9 126213008 126213008 C A DENND1A Missense_Mutation p.M440I 0.08 deleterious(0.05) possibly_damaging(0.507) TCGA-BR-4361-01 9 126777427 126777427 G A LHX2 Missense_Mutation p.R117H 0.05 deleterious(0) probably_damaging(0.998) TCGA-BR-4361-01 9 127920587 127920587 A G PPP6C Silent p.P141P 0.10 TCGA-BR-4361-01 9 128116933 128116933 A - GAPVD1 Frame_Shift_Del p.R1219Efs*45 0.26 TCGA-BR-4361-01 9 129157961 129157961 C - MVB12B Frame_Shift_Del p.N218Tfs*8 0.31 TCGA-BR-4361-01 9 129458768 129458769 GG - LMX1B 3'UTR 0.28 TCGA-BR-4361-01 9 130075748 130075748 C T GARNL3 Silent p.A116A 0.26 TCGA-BR-4361-01 9 130206787 130206787 A G ZNF79 Missense_Mutation p.T270A 0.05 deleterious(0.03) benign(0.142) TCGA-BR-4361-01 9 130251732 130251732 C T LRSAM1 Nonsense_Mutation p.Q453* 0.28 TCGA-BR-4361-01 9 130272565 130272565 G A FAM129B Missense_Mutation p.P341S 0.28 deleterious(0.01) possibly_damaging(0.596) TCGA-BR-4361-01 9 130707135 130707135 G A FAM102A Silent p.D320D 0.38 TCGA-BR-4361-01 9 130710444 130710444 C T FAM102A Silent p.T174T 0.35 TCGA-BR-4361-01 9 130980867 130980867 C G DNM1 Missense_Mutation p.A81G 0.08 tolerated(0.69) benign(0.001) TCGA-BR-4361-01 9 131222909 131222909 A - ODF2 Intron 0.31 TCGA-BR-4361-01 9 131349934 131349934 G A SPTAN1 Missense_Mutation p.G943D 0.46 deleterious(0.04) benign(0.088) TCGA-BR-4361-01 9 131745643 131745643 C A NUP188 Missense_Mutation p.A623D 0.06 tolerated(0.16) possibly_damaging(0.902) TCGA-BR-4361-01 9 13188889 13188889 A G MPDZ Missense_Mutation p.F753S 0.04 deleterious(0) benign(0.39) TCGA-BR-4361-01 9 131940298 131940298 T C IER5L Missense_Mutation p.S12G 0.27 deleterious_low_confidence(0.01) probably_damaging(0.975) TCGA-BR-4361-01 9 133352330 133352330 G A ASS1 Missense_Mutation p.E224K 0.29 tolerated(0.24) benign(0.091) TCGA-BR-4361-01 9 133952676 133952676 A G LAMC3 Silent p.A1244A 0.32 TCGA-BR-4361-01 9 134007993 134007993 A - NUP214 Frame_Shift_Del p.V228Sfs*29 0.31 TCGA-BR-4361-01 9 134020113 134020113 T C NUP214 Missense_Mutation p.S581P 0.35 possibly_damaging(0.504) TCGA-BR-4361-01 9 134073008 134073008 C - NUP214 Frame_Shift_Del p.P1378Rfs*3 0.30 TCGA-BR-4361-01 9 134073761 134073761 G A NUP214 Missense_Mutation p.G1627D 0.08 benign(0.254) TCGA-BR-4361-01 9 135140330 135140330 G A SETX Missense_Mutation p.R2444C 0.31 deleterious(0) probably_damaging(0.999) TCGA-BR-4361-01 9 135942495 135942495 C T CEL Silent p.C269C 0.12 TCGA-BR-4361-01 9 136217103 136217103 A G RPL7A Missense_Mutation p.T142A 0.20 tolerated(0.56) benign(0.041) TCGA-BR-4361-01 9 136444295 136444295 C T FAM163B Missense_Mutation p.G117D 0.50 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 9 136671273 136671273 T C VAV2 Missense_Mutation p.R256G 0.15 tolerated(0.23) probably_damaging(0.948) TCGA-BR-4361-01 9 137623460 137623460 C T COL5A1 Missense_Mutation p.S428L 0.30 probably_damaging(0.955) TCGA-BR-4361-01 9 138380066 138380066 C T PPP1R26 3'UTR 0.34 TCGA-BR-4361-01 9 138516095 138516095 A G GLT6D1 Missense_Mutation p.Y227H 0.09 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 9 138594206 138594206 C T KCNT1 Silent p.C34C 0.30 TCGA-BR-4361-01 9 138676625 138676625 G A KCNT1 Missense_Mutation p.D1016N 0.37 deleterious(0.01) probably_damaging(0.991) TCGA-BR-4361-01 9 139100687 139100687 T A QSOX2 Missense_Mutation p.S662C 0.40 deleterious(0) probably_damaging(0.999) TCGA-BR-4361-01 9 139395173 139395173 T C NOTCH1 Missense_Mutation p.N1922S 0.07 tolerated(0.84) benign(0.007) TCGA-BR-4361-01 9 139397686 139397686 C T NOTCH1 Silent p.A1705A 0.25 TCGA-BR-4361-01 9 139616526 139616526 G - FAM69B Intron 0.26 TCGA-BR-4361-01 9 139995548 139995548 G - MAN1B1 Frame_Shift_Del p.L339Sfs*2 0.30 TCGA-BR-4361-01 9 140093527 140093527 T C TPRN Missense_Mutation p.Y546C 0.08 deleterious(0) probably_damaging(0.999) TCGA-BR-4361-01 9 140110812 140110812 G A NDOR1 Missense_Mutation p.A589T 0.31 tolerated(0.38) benign(0.008) TCGA-BR-4361-01 9 140435173 140435173 T C PNPLA7 Missense_Mutation p.D223G 0.43 deleterious(0.03) probably_damaging(1) TCGA-BR-4361-01 9 140850184 140850184 C T CACNA1B Missense_Mutation p.R369C 0.29 deleterious(0) benign(0.428) TCGA-BR-4361-01 9 140952269 140952269 C T CACNA1B Missense_Mutation p.L1352F 0.42 deleterious(0.01) probably_damaging(0.93) TCGA-BR-4361-01 9 141016157 141016157 C - CACNA1B Frame_Shift_Del p.L2244Sfs*57 0.31 TCGA-BR-4361-01 9 14722635 14722635 C T CER1 Silent p.L12L 0.27 TCGA-BR-4361-01 9 15047970 15047970 A G RP11-54D18.3 RNA 0.15 TCGA-BR-4361-01 9 15214159 15214159 C T TTC39B Missense_Mutation p.A154T 0.25 deleterious(0) probably_damaging(0.994) TCGA-BR-4361-01 9 15471287 15471287 C T PSIP1 Intron 0.11 TCGA-BR-4361-01 9 15490046 15490050 CTTTT - PSIP1 Frame_Shift_Del p.K75Ffs*2 0.24 TCGA-BR-4361-01 9 15591502 15591502 G A CCDC171 Missense_Mutation p.R164Q 0.31 tolerated(0.65) benign(0.004) TCGA-BR-4361-01 9 15623365 15623365 T C CCDC171 Missense_Mutation p.L259P 0.12 deleterious(0) probably_damaging(0.931) TCGA-BR-4361-01 9 15874651 15874651 T C CCDC171 Missense_Mutation p.V1197A 0.25 tolerated(0.52) benign(0.138) TCGA-BR-4361-01 9 17394908 17394908 A T CNTLN Missense_Mutation p.Y819F 0.33 tolerated(0.55) benign(0.293) TCGA-BR-4361-01 9 17484474 17484474 A G CNTLN Missense_Mutation p.Q1346R 0.27 deleterious(0.05) benign(0.001) TCGA-BR-4361-01 9 18474174 18474174 G T ADAMTSL1 5'UTR 0.45 TCGA-BR-4361-01 9 19372127 19372127 A G DENND4C Missense_Mutation p.S1896G 0.28 tolerated(1) benign(0.012) TCGA-BR-4361-01 9 19516300 19516300 T C SLC24A2 Missense_Mutation p.M613V 0.42 deleterious(0) probably_damaging(0.981) TCGA-BR-4361-01 9 20885231 20885231 T C FOCAD Splice_Site p.X875_splice 0.33 TCGA-BR-4361-01 9 21141682 21141682 T C IFNW1 5'UTR 0.15 TCGA-BR-4361-01 9 21333894 21333894 T C KLHL9 Missense_Mutation p.E322G 0.11 tolerated(0.2) benign(0.008) TCGA-BR-4361-01 9 2161854 2161854 A G SMARCA2 Missense_Mutation p.T1384A 0.12 benign(0.104) TCGA-BR-4361-01 9 27560292 27560292 A C C9orf72 Missense_Mutation p.I224S 0.34 deleterious(0) possibly_damaging(0.663) TCGA-BR-4361-01 9 32423340 32423340 T C ACO1 Missense_Mutation p.Y332H 0.06 tolerated(0.11) benign(0.01) TCGA-BR-4361-01 9 33026949 33026949 T - DNAJA1 Frame_Shift_Del p.F92Lfs*22 0.24 TCGA-BR-4361-01 9 33369964 33369964 C T NFX1 Silent p.D1117D 0.30 TCGA-BR-4361-01 9 33796745 33796745 G T PRSS3 Missense_Mutation p.G106C 0.21 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 9 34257342 34257342 G A KIF24 Missense_Mutation p.P755S 0.33 tolerated(0.09) benign(0.05) TCGA-BR-4361-01 9 34371269 34371269 G A KIAA1161 Missense_Mutation p.A524V 0.38 tolerated(0.18) benign(0.009) TCGA-BR-4361-01 9 34689725 34689725 T C CCL19 3'UTR 0.28 TCGA-BR-4361-01 9 34996633 34996633 C T DNAJB5 Missense_Mutation p.R309C 0.16 deleterious(0) probably_damaging(0.909) TCGA-BR-4361-01 9 35045821 35045821 A C C9orf131 Missense_Mutation p.K1065N 0.09 deleterious(0.02) probably_damaging(0.997) TCGA-BR-4361-01 9 35077347 35077347 G - FANCG Frame_Shift_Del p.P187Qfs*5 0.09 TCGA-BR-4361-01 9 35450007 35450007 A G ATP8B5P RNA 0.12 TCGA-BR-4361-01 9 35689707 35689707 G A TPM2 Silent p.C36C 0.36 TCGA-BR-4361-01 9 35736081 35736081 G A CREB3 Missense_Mutation p.M216I 0.29 tolerated(0.21) benign(0.153) TCGA-BR-4361-01 9 35750330 35750330 G A RGP1 Silent p.Q69Q 0.31 TCGA-BR-4361-01 9 35808152 35808152 T C SPAG8 3'UTR 0.31 TCGA-BR-4361-01 9 36121578 36121578 C T RECK Missense_Mutation p.R863C 0.31 deleterious(0) probably_damaging(0.981) TCGA-BR-4361-01 9 36390590 36390590 T C RNF38 Silent p.A12A 0.34 TCGA-BR-4361-01 9 37888367 37888367 A G SLC25A51 Missense_Mutation p.Y61H 0.33 tolerated(0.74) benign(0.003) TCGA-BR-4361-01 9 5089710 5089710 C T JAK2 Missense_Mutation p.P870S 0.24 deleterious(0) probably_damaging(0.932) TCGA-BR-4361-01 9 6610292 6610292 A G GLDC Missense_Mutation p.Y179H 0.08 deleterious(0) possibly_damaging(0.875) TCGA-BR-4361-01 9 69117758 69117758 A G PGM5P2 RNA 0.23 TCGA-BR-4361-01 9 711135 711135 C A KANK1 Silent p.P123P 0.33 TCGA-BR-4361-01 9 72897376 72897376 A G SMC5 Silent p.K286K 0.26 TCGA-BR-4361-01 9 74332984 74332984 T C TMEM2 Missense_Mutation p.H760R 0.09 deleterious(0) benign(0.341) TCGA-BR-4361-01 9 74842916 74842916 C T GDA Nonsense_Mutation p.R294* 0.44 TCGA-BR-4361-01 9 80336156 80336156 T G GNAQ 3'UTR 0.14 TCGA-BR-4361-01 9 84608132 84608132 G - SPATA31D1 Frame_Shift_Del p.G917Afs*10 0.25 TCGA-BR-4361-01 9 86504088 86504088 G A KIF27 Silent p.H630H 0.23 TCGA-BR-4361-01 9 88938154 88938154 C A ZCCHC6 Missense_Mutation p.Q837H 0.10 tolerated(0.2) benign(0.002) TCGA-BR-4361-01 9 90254368 90254368 A - DAPK1 Frame_Shift_Del p.N176Tfs*13 0.09 TCGA-BR-4361-01 9 91793254 91793254 G A SHC3 Missense_Mutation p.P41L 0.27 deleterious(0) benign(0.008) TCGA-BR-4361-01 9 95062252 95062252 C A NOL8 Missense_Mutation p.Q1074H 0.32 tolerated(0.07) benign(0.285) TCGA-BR-4361-01 9 95179830 95179830 A - OMD Frame_Shift_Del p.L4* 0.20 TCGA-BR-4361-01 9 95400351 95400351 G A IPPK Missense_Mutation p.P283L 0.45 tolerated(0.42) benign(0.001) TCGA-BR-4361-01 9 95411818 95411818 A G IPPK Missense_Mutation p.Y111H 0.12 tolerated(0.07) probably_damaging(0.992) TCGA-BR-4361-01 9 95481493 95481493 G A BICD2 Silent p.G478G 0.11 TCGA-BR-4361-01 9 95609231 95609231 C T ZNF484 Missense_Mutation p.C615Y 0.27 deleterious(0) probably_damaging(0.999) TCGA-BR-4361-01 9 96082789 96082789 T - WNK2 3'Flank 0.40 TCGA-BR-4361-01 9 97555117 97555117 C T C9orf3 Silent p.C345C 0.35 TCGA-BR-4361-01 9 97843020 97843020 G A C9orf3 Silent p.T759T 0.28 TCGA-BR-4361-01 9 98718286 98718286 A G ERCC6L2 Missense_Mutation p.I657M 0.07 deleterious(0) benign(0.181) TCGA-BR-4361-01 9 99284802 99284802 G A CDC14B Silent p.N443N 0.30 TCGA-BR-4361-01 9 99581062 99581062 T C ZNF782 Missense_Mutation p.T415A 0.31 deleterious(0.03) possibly_damaging(0.571) TCGA-BR-4361-01 9 99699450 99699450 C - NUTM2G Frame_Shift_Del p.P364Rfs*56 0.13 TCGA-BR-4361-01 X 100515565 100515565 T C DRP2 Silent p.S943S 0.06 TCGA-BR-4361-01 X 100646445 100646445 A G RPL36A-HNRNPH2 Splice_Site p.X12_splice 0.08 TCGA-BR-4361-01 X 100667240 100667240 T C HNRNPH2 Silent p.S88S 0.10 TCGA-BR-4361-01 X 100809343 100809343 T G ARMCX1 3'UTR 0.33 TCGA-BR-4361-01 X 101395936 101395936 T G TCEAL6 Missense_Mutation p.K123T 0.38 deleterious(0) probably_damaging(0.944) TCGA-BR-4361-01 X 101969872 101969872 G A GPRASP2 Silent p.G25G 0.08 TCGA-BR-4361-01 X 105152922 105152923 - G NRK Frame_Shift_Ins p.Q433Afs*25 0.29 TCGA-BR-4361-01 X 105883944 105883944 G A CXorf57 Missense_Mutation p.A633T 0.08 tolerated(0.3) benign(0.002) TCGA-BR-4361-01 X 106312575 106312575 A G RBM41 Missense_Mutation p.F329L 0.05 deleterious(0) probably_damaging(0.999) TCGA-BR-4361-01 X 106803511 106803511 C T FRMPD3 Missense_Mutation p.R296C 0.24 deleterious(0) probably_damaging(0.997) TCGA-BR-4361-01 X 106845696 106845696 A G FRMPD3 Missense_Mutation p.Y1509C 0.06 deleterious(0.03) benign(0.004) TCGA-BR-4361-01 X 106957919 106957919 G T TSC22D3 Missense_Mutation p.Q145K 0.33 deleterious(0.03) probably_damaging(0.999) TCGA-BR-4361-01 X 107148791 107148791 T C MID2 Silent p.A336A 0.31 TCGA-BR-4361-01 X 107979483 107979483 G A IRS4 Missense_Mutation p.T31I 0.07 deleterious_low_confidence(0) probably_damaging(0.963) TCGA-BR-4361-01 X 111095589 111095589 C T TRPC5 Missense_Mutation p.M438I 0.05 tolerated(0.59) probably_damaging(0.93) TCGA-BR-4361-01 X 111155755 111155755 G A TRPC5 Missense_Mutation p.R222C 0.29 deleterious(0) probably_damaging(0.973) TCGA-BR-4361-01 X 111914429 111914429 C T LHFPL1 Missense_Mutation p.V64M 0.06 tolerated(0.14) possibly_damaging(0.596) TCGA-BR-4361-01 X 112033828 112033828 A G AMOT Silent p.A703A 0.29 TCGA-BR-4361-01 X 114953364 114953364 G A RP1-241P17.4 Silent p.F62F 0.05 TCGA-BR-4361-01 X 115590150 115590150 A T SLC6A14 3'UTR 0.11 TCGA-BR-4361-01 X 117053538 117053538 A G KLHL13 Silent p.S175S 0.31 TCGA-BR-4361-01 X 117576542 117576542 A G WDR44 Silent p.S761S 0.21 TCGA-BR-4361-01 X 117677508 117677508 T C DOCK11 Missense_Mutation p.V115A 0.35 deleterious(0) possibly_damaging(0.628) TCGA-BR-4361-01 X 118694255 118694255 T C CXorf56 Missense_Mutation p.D73G 0.07 tolerated(0.33) benign(0.001) TCGA-BR-4361-01 X 118972430 118972430 T C UPF3B Missense_Mutation p.K303E 0.30 tolerated(0.94) benign(0.323) TCGA-BR-4361-01 X 119211110 119211110 C T RHOXF2B Missense_Mutation p.G75R 0.22 deleterious(0.02) benign(0.041) TCGA-BR-4361-01 X 119388375 119388375 G T ZBTB33 Nonsense_Mutation p.G369* 0.05 TCGA-BR-4361-01 X 119742205 119742205 A G MCTS1 Missense_Mutation p.T131A 0.06 tolerated(0.15) benign(0.003) TCGA-BR-4361-01 X 123518480 123518480 T C TENM1 Missense_Mutation p.T2101A 0.05 tolerated(1) benign(0.002) TCGA-BR-4361-01 X 129147330 129147330 T C BCORL1 Silent p.T194T 0.08 TCGA-BR-4361-01 X 129159178 129159178 T C BCORL1 Missense_Mutation p.M1301T 0.13 benign(0.316) TCGA-BR-4361-01 X 129318513 129318513 T C RAB33A Silent p.D171D 0.28 TCGA-BR-4361-01 X 129505599 129505599 T C SLC25A14 Missense_Mutation p.L306P 0.27 deleterious(0) probably_damaging(0.992) TCGA-BR-4361-01 X 133988192 133988192 G A FAM122C Missense_Mutation p.A172T 0.11 tolerated(0.14) benign(0.015) TCGA-BR-4361-01 X 134421382 134421382 T A ZNF75D Missense_Mutation p.D407V 0.04 deleterious(0) possibly_damaging(0.544) TCGA-BR-4361-01 X 134711258 134711258 T C DDX26B Silent p.P638P 0.28 TCGA-BR-4361-01 X 135084264 135084264 T C SLC9A6 Intron 0.30 TCGA-BR-4361-01 X 135308143 135308143 C T MAP7D3 Silent p.E688E 0.05 TCGA-BR-4361-01 X 135314194 135314194 G - MAP7D3 Frame_Shift_Del p.Q308Rfs*2 0.30 TCGA-BR-4361-01 X 135582956 135582956 C T HTATSF1 Silent p.D183D 0.27 TCGA-BR-4361-01 X 135790867 135790867 T C ARHGEF6 Missense_Mutation p.Q297R 0.28 deleterious(0) possibly_damaging(0.499) TCGA-BR-4361-01 X 135961537 135961537 G A RBMX Missense_Mutation p.T17M 0.04 tolerated(0.11) benign(0.086) TCGA-BR-4361-01 X 136652218 136652218 T C ZIC3 Missense_Mutation p.W465R 0.05 deleterious(0) probably_damaging(0.994) TCGA-BR-4361-01 X 13764477 13764477 C T OFD1 Missense_Mutation p.A186V 0.28 tolerated(0.29) benign(0.2) TCGA-BR-4361-01 X 13778758 13778758 G - OFD1 Frame_Shift_Del p.G728Afs*89 0.34 TCGA-BR-4361-01 X 138864772 138864773 - T ATP11C Frame_Shift_Ins p.M632Nfs*7 0.19 TCGA-BR-4361-01 X 1409328 1409328 A G CSF2RA Missense_Mutation p.Y191C 0.34 deleterious(0) probably_damaging(0.999) TCGA-BR-4361-01 X 145109341 145109341 A G MIR891A RNA 0.07 TCGA-BR-4361-01 X 152914972 152914972 C T DUSP9 Missense_Mutation p.A220V 0.29 deleterious(0.01) possibly_damaging(0.739) TCGA-BR-4361-01 X 152959593 152959593 T C SLC6A8 Silent p.G421G 0.34 TCGA-BR-4361-01 X 153052989 153052989 C T IDH3G Missense_Mutation p.E202K 0.19 tolerated(0.81) benign(0.243) TCGA-BR-4361-01 X 153222823 153222823 C T HCFC1 Silent p.T765T 0.34 TCGA-BR-4361-01 X 153296142 153296142 G A MECP2 Silent p.P391P 0.11 TCGA-BR-4361-01 X 153416152 153416152 A G OPN1LW Missense_Mutation p.H46R 0.16 deleterious(0) possibly_damaging(0.862) TCGA-BR-4361-01 X 153416196 153416196 A G OPN1LW Missense_Mutation p.I61V 0.17 tolerated(0.92) benign(0.002) TCGA-BR-4361-01 X 153416331 153416331 G A OPN1LW Missense_Mutation p.A106T 0.08 deleterious(0.03) probably_damaging(0.977) TCGA-BR-4361-01 X 153628915 153628915 A G RPL10 Missense_Mutation p.H147R 0.32 tolerated(0.13) benign(0.105) TCGA-BR-4361-01 X 153698129 153698129 T C PLXNA3 Splice_Site p.X1599_splice 0.34 TCGA-BR-4361-01 X 154290070 154290070 A - CMC4 3'UTR 0.24 TCGA-BR-4361-01 X 154489943 154489943 C T RAB39B 3'UTR 0.25 TCGA-BR-4361-01 X 155119126 155119126 A G VAMP7 5'UTR 0.31 TCGA-BR-4361-01 X 155255057 155255058 - C WASH6P RNA 0.15 TCGA-BR-4361-01 X 15864108 15864108 G A AP1S2 Missense_Mutation p.A69V 0.30 deleterious(0.02) benign(0.183) TCGA-BR-4361-01 X 16859704 16859704 G A TXLNG Missense_Mutation p.A468T 0.12 tolerated(0.12) benign(0.01) TCGA-BR-4361-01 X 1712692 1712692 C T AKAP17A Missense_Mutation p.R113C 0.32 deleterious(0) probably_damaging(0.989) TCGA-BR-4361-01 X 17744154 17744154 C T NHS Missense_Mutation p.S622L 0.31 deleterious(0.02) probably_damaging(0.999) TCGA-BR-4361-01 X 18234721 18234721 T G BEND2 Missense_Mutation p.N53T 0.32 tolerated_low_confidence(0.48) benign(0) TCGA-BR-4361-01 X 18631319 18631319 A G CDKL5 Missense_Mutation p.T734A 0.34 tolerated_low_confidence(0.27) benign(0.001) TCGA-BR-4361-01 X 19378967 19378967 A G PDHA1 3'UTR 0.36 TCGA-BR-4361-01 X 209706 209706 T C PLCXD1 Missense_Mutation p.V185A 0.12 tolerated(0.12) benign(0.057) TCGA-BR-4361-01 X 24228590 24228590 T C ZFX Silent p.T505T 0.33 TCGA-BR-4361-01 X 24549780 24549780 T C PDK3 Missense_Mutation p.F324L 0.34 tolerated(0.05) benign(0.008) TCGA-BR-4361-01 X 24608229 24608229 A T PCYT1B Missense_Mutation p.Y133N 0.37 deleterious(0) probably_damaging(0.998) TCGA-BR-4361-01 X 2773049 2773049 G A GYG2 Missense_Mutation p.D145N 0.20 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 X 27766824 27766824 A G DCAF8L2 Silent p.P604P 0.38 TCGA-BR-4361-01 X 30326975 30326975 C - NR0B1 Frame_Shift_Del p.G169Afs*95 0.31 TCGA-BR-4361-01 X 30686191 30686191 G A GK Missense_Mutation p.C72Y 0.16 tolerated(0.16) probably_damaging(0.926) TCGA-BR-4361-01 X 32613901 32613901 T C DMD Silent p.A525A 0.33 TCGA-BR-4361-01 X 32613904 32613904 G A DMD Silent p.H524H 0.25 TCGA-BR-4361-01 X 34962906 34962906 T C FAM47B 3'UTR 0.11 TCGA-BR-4361-01 X 35969405 35969405 G A CXorf22 Missense_Mutation p.V272I 0.26 tolerated(0.15) benign(0.002) TCGA-BR-4361-01 X 37027011 37027011 G A FAM47C Silent p.T176T 0.32 TCGA-BR-4361-01 X 37850373 37850373 A G CXorf27 Missense_Mutation p.E94G 0.29 deleterious(0.01) benign(0.192) TCGA-BR-4361-01 X 39923086 39923087 - T BCOR Frame_Shift_Ins p.Q1208Tfs*8 0.40 TCGA-BR-4361-01 X 39932568 39932568 T C BCOR Silent p.G677G 0.33 TCGA-BR-4361-01 X 40456500 40456500 G T ATP6AP2 Splice_Site p.X101_splice 0.09 TCGA-BR-4361-01 X 41000617 41000617 T C USP9X Missense_Mutation p.V365A 0.37 tolerated(0.05) probably_damaging(0.93) TCGA-BR-4361-01 X 41201791 41201791 C T DDX3X Missense_Mutation p.R110C 0.25 deleterious(0.03) benign(0.002) TCGA-BR-4361-01 X 47306636 47306636 C T ZNF41 3'UTR 0.33 TCGA-BR-4361-01 X 47497513 47497513 G A ELK1 Silent p.G241G 0.33 TCGA-BR-4361-01 X 47497563 47497563 C T ELK1 Missense_Mutation p.E225K 0.19 tolerated(0.08) benign(0.397) TCGA-BR-4361-01 X 47774714 47774714 T C ZNF81 Silent p.H223H 0.26 TCGA-BR-4361-01 X 48558747 48558747 G A SUV39H1 Missense_Mutation p.R144H 0.30 tolerated(0.4) benign(0.052) TCGA-BR-4361-01 X 48649665 48649665 C T GATA1 Missense_Mutation p.P50L 0.25 deleterious_low_confidence(0.04) benign(0.007) TCGA-BR-4361-01 X 48673824 48673824 G A HDAC6 Missense_Mutation p.V395I 0.30 deleterious(0.02) probably_damaging(0.978) TCGA-BR-4361-01 X 48780406 48780406 A G OTUD5 3'UTR 0.21 TCGA-BR-4361-01 X 49093645 49093645 C T CCDC22 Missense_Mutation p.A48V 0.30 tolerated(0.2) benign(0.311) TCGA-BR-4361-01 X 49958505 49958505 G A AKAP4 Missense_Mutation p.R287C 0.36 tolerated(0.14) benign(0.016) TCGA-BR-4361-01 X 53106197 53106197 G A GPR173 Missense_Mutation p.A132T 0.39 tolerated(0.6) benign(0.025) TCGA-BR-4361-01 X 53227772 53227772 A G KDM5C Missense_Mutation p.F806L 0.29 deleterious(0.02) probably_damaging(0.998) TCGA-BR-4361-01 X 53630414 53630414 G A HUWE1 Silent p.L931L 0.33 TCGA-BR-4361-01 X 54224914 54224914 C T WNK3 Missense_Mutation p.G1749E 0.29 deleterious_low_confidence(0) benign(0.138) TCGA-BR-4361-01 X 54263437 54263437 C T WNK3 Missense_Mutation p.S1521N 0.28 deleterious(0.02) benign(0.033) TCGA-BR-4361-01 X 54319444 54319444 C T WNK3 Silent p.Q638Q 0.27 TCGA-BR-4361-01 X 54780360 54780360 T C ITIH6 Intron 0.24 TCGA-BR-4361-01 X 55029534 55029534 G A APEX2 Missense_Mutation p.A188T 0.34 tolerated(0.16) benign(0.141) TCGA-BR-4361-01 X 55514918 55514918 C T USP51 Missense_Mutation p.R152H 0.30 deleterious_low_confidence(0.03) unknown(0) TCGA-BR-4361-01 X 56591874 56591874 C - UBQLN2 Frame_Shift_Del p.P525Lfs*71 0.42 TCGA-BR-4361-01 X 57337164 57337164 T C FAAH2 Splice_Site p.X138_splice 0.32 TCGA-BR-4361-01 X 62570001 62570001 T G SPIN4 Missense_Mutation p.K233T 0.11 deleterious(0) probably_damaging(0.995) TCGA-BR-4361-01 X 65415012 65415012 G T HEPH Missense_Mutation p.S535I 0.27 deleterious(0) probably_damaging(0.998) TCGA-BR-4361-01 X 69255508 69255508 C T EDA 3'UTR 0.35 TCGA-BR-4361-01 X 69521784 69521784 C T KIF4A Missense_Mutation p.A184V 0.04 tolerated(0.1) probably_damaging(0.981) TCGA-BR-4361-01 X 70586160 70586160 G T TAF1 5'UTR 0.29 TCGA-BR-4361-01 X 71522015 71522015 T C CITED1 Missense_Mutation p.Y73C 0.36 deleterious(0) probably_damaging(1) TCGA-BR-4361-01 X 72433979 72433979 T - NAP1L2 Frame_Shift_Del p.K117Sfs*9 0.26 TCGA-BR-4361-01 X 73044491 73044491 C T XIST RNA 0.44 TCGA-BR-4361-01 X 73046077 73046077 C T XIST RNA 0.27 TCGA-BR-4361-01 X 73071875 73071875 G A XIST RNA 0.28 TCGA-BR-4361-01 X 73960658 73960658 C - KIAA2022 Frame_Shift_Del p.G1245Efs*27 0.28 TCGA-BR-4361-01 X 73961874 73961874 G T KIAA2022 Missense_Mutation p.Q840K 0.08 deleterious(0.01) benign(0.188) TCGA-BR-4361-01 X 74318830 74318830 G A ABCB7 Missense_Mutation p.P135S 0.30 tolerated(0.43) benign(0.236) TCGA-BR-4361-01 X 76875932 76875932 T C ATRX Missense_Mutation p.M1735V 0.09 probably_damaging(0.952) TCGA-BR-4361-01 X 78010974 78010974 A G LPAR4 Missense_Mutation p.K203R 0.24 tolerated(0.48) benign(0.313) TCGA-BR-4361-01 X 7811294 7811294 C A VCX Missense_Mutation p.A17E 0.09 deleterious_low_confidence(0.01) unknown(0) TCGA-BR-4361-01 X 79286643 79286643 T C TBX22 3'UTR 0.08 TCGA-BR-4361-01 X 84363505 84363505 C T SATL1 Missense_Mutation p.G157D 0.10 tolerated(0.25) probably_damaging(0.969) TCGA-BR-4361-01 X 85119608 85119608 T C CHM 3'UTR 0.32 TCGA-BR-4361-01 X 85218946 85218946 C A CHM Missense_Mutation p.E142D 0.15 tolerated(0.23) benign(0.005) TCGA-BR-4361-01 X 96213149 96213149 T C DIAPH2 Splice_Site p.X645_splice 0.08 TCGA-BR-4361-01 X 9900831 9900831 C T SHROOM2 Missense_Mutation p.R1170C 0.27 deleterious(0) probably_damaging(0.985) TCGA-BR-4361-01 X 99919891 99919891 G A SRPX2 Missense_Mutation p.R159H 0.32 tolerated(0.17) probably_damaging(0.95) TCGA-BR-4362-01 10 101294811 101294811 C T NKX2-3 Missense_Mutation p.P143L 0.27 deleterious(0) probably_damaging(0.988) TCGA-BR-4362-01 10 103867901 103867901 C T LDB1 Silent p.P395P 0.03 TCGA-BR-4362-01 10 104176760 104176760 G A PSD Silent p.G12G 0.25 TCGA-BR-4362-01 10 105107192 105107192 T C PCGF6 Silent p.L191L 0.15 TCGA-BR-4362-01 10 105885351 105885351 T C SFR1 Silent p.A209A 0.08 TCGA-BR-4362-01 10 106039129 106039129 T C GSTO2 Missense_Mutation p.V123A 0.32 tolerated(0.06) possibly_damaging(0.76) TCGA-BR-4362-01 10 108489836 108489836 C T SORCS1 Silent p.V332V 0.07 TCGA-BR-4362-01 10 111893350 111893350 A - ADD3 Frame_Shift_Del p.K701Rfs*8 0.24 TCGA-BR-4362-01 10 114154784 114154786 TCT - ACSL5 In_Frame_Del p.F84del 0.40 TCGA-BR-4362-01 10 115340373 115340373 A C HABP2 Missense_Mutation p.K254Q 0.25 tolerated(0.22) benign(0.137) TCGA-BR-4362-01 10 115341710 115341710 A G HABP2 Missense_Mutation p.E305G 0.25 tolerated(0.06) benign(0.043) TCGA-BR-4362-01 10 115910861 115910861 C T C10orf118 Missense_Mutation p.R293Q 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-BR-4362-01 10 116038514 116038514 C T VWA2 Missense_Mutation p.T246M 0.21 deleterious(0.03) possibly_damaging(0.592) TCGA-BR-4362-01 10 118738812 118738812 G A KIAA1598 Silent p.G22G 0.28 TCGA-BR-4362-01 10 120095130 120095130 T - FAM204A Frame_Shift_Del p.K86Nfs*25 0.20 TCGA-BR-4362-01 10 120353606 120353606 G T PRLHR 3'UTR 0.26 TCGA-BR-4362-01 10 120889037 120889037 T C FAM45A Silent p.A235A 0.24 TCGA-BR-4362-01 10 120896188 120896188 T C FAM45A 3'UTR 0.18 TCGA-BR-4362-01 10 120928817 120928817 G A PRDX3 Missense_Mutation p.H197Y 0.24 deleterious(0) probably_damaging(0.998) TCGA-BR-4362-01 10 124189429 124189429 C T PLEKHA1 Missense_Mutation p.A397V 0.18 tolerated(0.14) probably_damaging(0.986) TCGA-BR-4362-01 10 124909354 124909354 C T HMX2 Silent p.R179R 0.17 TCGA-BR-4362-01 10 124924495 124924495 T A BUB3 3'UTR 0.38 TCGA-BR-4362-01 10 127451935 127451935 C T EDRF1 Missense_Mutation p.A1204V 0.18 deleterious(0.02) possibly_damaging(0.628) TCGA-BR-4362-01 10 128973736 128973736 T C FAM196A Silent p.S308S 0.06 TCGA-BR-4362-01 10 132944832 132944832 G A TCERG1L Missense_Mutation p.R376C 0.31 deleterious(0) probably_damaging(0.998) TCGA-BR-4362-01 10 134884565 134884565 C T GPR123 Missense_Mutation p.R45W 0.29 deleterious_low_confidence(0) possibly_damaging(0.835) TCGA-BR-4362-01 10 134942136 134942136 C T GPR123 Silent p.A268A 0.33 TCGA-BR-4362-01 10 13696452 13696452 G - FRMD4A Frame_Shift_Del p.P1005Qfs*8 0.37 TCGA-BR-4362-01 10 15145991 15145991 C A RPP38 Missense_Mutation p.S226R 0.27 tolerated(0.43) benign(0.007) TCGA-BR-4362-01 10 15255974 15255974 T C FAM171A1 Missense_Mutation p.E538G 0.23 deleterious(0.04) possibly_damaging(0.559) TCGA-BR-4362-01 10 16526546 16526546 A - PTER Frame_Shift_Del p.N56Ifs*18 0.24 TCGA-BR-4362-01 10 17113457 17113457 T G CUBN Missense_Mutation p.S865R 0.16 tolerated(0.2) possibly_damaging(0.694) TCGA-BR-4362-01 10 17756586 17756586 C T STAM Missense_Mutation p.A477V 0.27 tolerated(0.49) benign(0.158) TCGA-BR-4362-01 10 18292281 18292281 T C SLC39A12 Silent p.V647V 0.25 TCGA-BR-4362-01 10 22021968 22021968 G A MLLT10 Missense_Mutation p.A787T 0.23 tolerated(0.83) benign(0) TCGA-BR-4362-01 10 27066140 27066140 G A ABI1 Nonsense_Mutation p.R106* 0.27 TCGA-BR-4362-01 10 30316940 30316940 G A KIAA1462 Missense_Mutation p.P713S 0.06 tolerated(0.95) benign(0.003) TCGA-BR-4362-01 10 32311826 32311826 T - KIF5B Frame_Shift_Del p.M622Wfs*8 0.19 TCGA-BR-4362-01 10 33491868 33491868 G A NRP1 Silent p.D605D 0.12 TCGA-BR-4362-01 10 35456559 35456559 T - CREM Intron 0.34 TCGA-BR-4362-01 10 43089408 43089408 T C ZNF33B Silent p.E330E 0.14 TCGA-BR-4362-01 10 45652250 45652250 A C RP11-445N18.7 RNA 0.12 TCGA-BR-4362-01 10 50678712 50678712 A G ERCC6 Silent p.S1098S 0.08 TCGA-BR-4362-01 10 52834585 52834585 A G PRKG1 Missense_Mutation p.I79V 0.33 tolerated(1) benign(0.085) TCGA-BR-4362-01 10 53458101 53458101 C A CSTF2T Missense_Mutation p.R403S 0.06 deleterious(0.04) probably_damaging(0.942) TCGA-BR-4362-01 10 55782925 55782925 T G PCDH15 Missense_Mutation p.Q751H 0.23 deleterious(0) probably_damaging(0.99) TCGA-BR-4362-01 10 5784415 5784415 A - FAM208B Frame_Shift_Del p.T897Lfs*24 0.18 TCGA-BR-4362-01 10 6061429 6061429 A G IL2RA Missense_Mutation p.M230T 0.23 tolerated(0.33) benign(0.017) TCGA-BR-4362-01 10 61831056 61831056 C A ANK3 Missense_Mutation p.G3195C 0.26 probably_damaging(0.999) TCGA-BR-4362-01 10 63759903 63759903 C T ARID5B Missense_Mutation p.R186W 0.25 deleterious(0) probably_damaging(0.973) TCGA-BR-4362-01 10 64966978 64966978 T - JMJD1C Frame_Shift_Del p.K1484Sfs*24 0.30 TCGA-BR-4362-01 10 64979741 64979741 G A JMJD1C Silent p.D150D 0.24 TCGA-BR-4362-01 10 70225564 70225564 A G DNA2 Silent p.S235S 0.28 TCGA-BR-4362-01 10 70243182 70243182 T - SLC25A16 3'UTR 0.32 TCGA-BR-4362-01 10 71158430 71158430 G A HK1 Missense_Mutation p.V823I 0.31 deleterious(0) possibly_damaging(0.495) TCGA-BR-4362-01 10 73059019 73059019 C T UNC5B Silent p.T941T 0.27 TCGA-BR-4362-01 10 75676249 75676249 G A PLAU Missense_Mutation p.V408I 0.19 deleterious(0) probably_damaging(0.998) TCGA-BR-4362-01 10 75871668 75871668 C T VCL Missense_Mutation p.P916L 0.21 deleterious_low_confidence(0.02) benign(0.006) TCGA-BR-4362-01 10 7618459 7618459 G A ITIH5 Silent p.P645P 0.21 TCGA-BR-4362-01 10 7618934 7618934 C T ITIH5 Missense_Mutation p.R487H 0.28 tolerated(0.05) benign(0.168) TCGA-BR-4362-01 10 76781836 76781836 G A KAT6B Silent p.E1073E 0.30 TCGA-BR-4362-01 10 76789488 76789488 A G KAT6B Missense_Mutation p.I1636V 0.21 probably_damaging(0.946) TCGA-BR-4362-01 10 76789800 76789800 A C KAT6B Missense_Mutation p.I1740L 0.24 probably_damaging(0.946) TCGA-BR-4362-01 10 76863832 76863832 C A DUSP13 Intron 0.24 TCGA-BR-4362-01 10 76910314 76910314 C T SAMD8 Missense_Mutation p.R10C 0.22 tolerated(0.07) possibly_damaging(0.717) TCGA-BR-4362-01 10 82331288 82331288 G A SH2D4B Missense_Mutation p.R150H 0.21 deleterious(0.05) benign(0.111) TCGA-BR-4362-01 10 89717770 89717770 A - PTEN Frame_Shift_Del p.K267Rfs*9 0.44 TCGA-BR-4362-01 10 90697858 90697858 T G ACTA2 Missense_Mutation p.K317T 0.26 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-BR-4362-01 10 91066183 91066183 C T IFIT2 Missense_Mutation p.A157V 0.20 tolerated(0.09) benign(0.232) TCGA-BR-4362-01 10 92617193 92617193 A G HTR7 Missense_Mutation p.V79A 0.06 tolerated(0.77) benign(0) TCGA-BR-4362-01 10 94452214 94452214 G A HHEX Missense_Mutation p.E151K 0.20 deleterious(0.02) possibly_damaging(0.811) TCGA-BR-4362-01 10 95111577 95111577 G T MYOF Missense_Mutation p.H1170N 0.28 tolerated(0.13) probably_damaging(0.976) TCGA-BR-4362-01 10 95211875 95211875 A G MYOF Silent p.G56G 0.03 TCGA-BR-4362-01 10 96098412 96098412 A G NOC3L Missense_Mutation p.Y682H 0.04 tolerated(0.67) benign(0.006) TCGA-BR-4362-01 10 97050611 97050611 C T PDLIM1 Missense_Mutation p.G21D 0.17 deleterious(0.02) benign(0.358) TCGA-BR-4362-01 10 99212022 99212022 C T ZDHHC16 Missense_Mutation p.P140L 0.17 tolerated(0.2) benign(0.003) TCGA-BR-4362-01 10 99416585 99416585 C T PI4K2A Missense_Mutation p.S229L 0.26 deleterious(0.01) probably_damaging(0.995) TCGA-BR-4362-01 11 10022471 10022471 A T SBF2 Missense_Mutation p.V284D 0.19 deleterious(0) benign(0.02) TCGA-BR-4362-01 11 100996890 100996890 C T PGR Splice_Site p.X546_splice 0.39 TCGA-BR-4362-01 11 101362460 101362460 T G TRPC6 Missense_Mutation p.K319Q 0.23 tolerated(0.47) benign(0.424) TCGA-BR-4362-01 11 1018712 1018712 A G MUC6 Silent p.R1363R 0.21 TCGA-BR-4362-01 11 102196012 102196012 C T BIRC3 Missense_Mutation p.R258C 0.22 deleterious(0) probably_damaging(1) TCGA-BR-4362-01 11 1025193 1025193 G T MUC6 Missense_Mutation p.R992S 0.28 unknown(0) TCGA-BR-4362-01 11 103048288 103048288 A - DYNC2H1 Frame_Shift_Del p.K1961Rfs*3 0.25 TCGA-BR-4362-01 11 103908639 103908639 G T DDI1 Missense_Mutation p.E363D 0.18 deleterious(0) benign(0.405) TCGA-BR-4362-01 11 107427686 107427686 C T ALKBH8 Missense_Mutation p.R58Q 0.23 tolerated(0.17) probably_damaging(0.999) TCGA-BR-4362-01 11 108277568 108277568 A G C11orf65 Silent p.N117N 0.05 TCGA-BR-4362-01 11 108383615 108383615 C T EXPH5 Silent p.S873S 0.28 TCGA-BR-4362-01 11 1088727 1088727 G T MUC2 Missense_Mutation p.R1171M 0.16 probably_damaging(0.922) TCGA-BR-4362-01 11 111747699 111747699 G A FDXACB1 Silent p.H122H 0.22 TCGA-BR-4362-01 11 11354360 11354360 C A GALNT18 Missense_Mutation p.G433W 0.11 deleterious(0) probably_damaging(1) TCGA-BR-4362-01 11 11374429 11374429 G A CSNK2A3 Missense_Mutation p.R80C 0.25 deleterious(0) probably_damaging(0.99) TCGA-BR-4362-01 11 114112978 114112978 G A ZBTB16 Missense_Mutation p.V515M 0.25 tolerated(0.17) benign(0.035) TCGA-BR-4362-01 11 116701502 116701502 C T APOC3 Silent p.A23A 0.28 TCGA-BR-4362-01 11 117030719 117030719 C T PAFAH1B2 Nonsense_Mutation p.Q51* 0.03 TCGA-BR-4362-01 11 117241945 117241945 A T CEP164 Silent p.G305G 0.36 TCGA-BR-4362-01 11 117391893 117391893 T C DSCAML1 Missense_Mutation p.T449A 0.05 tolerated(0.74) benign(0.139) TCGA-BR-4362-01 11 118081424 118081424 C T AMICA1 Missense_Mutation p.E68K 0.25 deleterious(0.01) probably_damaging(0.933) TCGA-BR-4362-01 11 118110974 118110974 A T MPZL3 Silent p.L64L 0.27 TCGA-BR-4362-01 11 118374596 118374596 A G KMT2A Silent p.S2663S 0.27 TCGA-BR-4362-01 11 119156153 119156153 T C CBL Silent p.S606S 0.26 TCGA-BR-4362-01 11 11926990 11926990 C T USP47 Silent p.Y220Y 0.25 TCGA-BR-4362-01 11 11927094 11927094 T C USP47 Missense_Mutation p.V255A 0.12 deleterious(0) possibly_damaging(0.547) TCGA-BR-4362-01 11 120996337 120996337 C T TECTA Silent p.C510C 0.30 TCGA-BR-4362-01 11 121037433 121037433 G T TECTA Missense_Mutation p.D1844Y 0.19 deleterious(0.02) probably_damaging(0.998) TCGA-BR-4362-01 11 121038774 121038774 G A TECTA Silent p.T1866T 0.26 TCGA-BR-4362-01 11 123909354 123909354 A G OR10G7 Missense_Mutation p.Y119H 0.18 deleterious(0) possibly_damaging(0.882) TCGA-BR-4362-01 11 124007961 124007961 T C VWA5A Missense_Mutation p.I622T 0.12 tolerated(0.37) benign(0) TCGA-BR-4362-01 11 1263838 1263838 C A MUC5B Missense_Mutation p.P1910T 0.21 unknown(0) TCGA-BR-4362-01 11 129745274 129745274 G A NFRKB Missense_Mutation p.A636V 0.41 tolerated(0.15) unknown(0) TCGA-BR-4362-01 11 129752496 129752496 T - NFRKB Frame_Shift_Del p.K336Rfs*13 0.27 TCGA-BR-4362-01 11 15222403 15222403 C T INSC Missense_Mutation p.R290W 0.14 deleterious(0.01) probably_damaging(0.983) TCGA-BR-4362-01 11 16424308 16424308 A - SOX6 Intron 0.20 TCGA-BR-4362-01 11 1642623 1642623 C A KRTAP5-4 3'UTR 0.29 TCGA-BR-4362-01 11 1651484 1651484 C A KRTAP5-5 Silent p.G138G 0.16 TCGA-BR-4362-01 11 16769659 16769659 C T C11orf58 Missense_Mutation p.R55C 0.26 deleterious(0) possibly_damaging(0.59) TCGA-BR-4362-01 11 18369452 18369452 C T GTF2H1 Missense_Mutation p.P347S 0.23 tolerated(0.1) benign(0.012) TCGA-BR-4362-01 11 18637193 18637193 G A SPTY2D1 Nonsense_Mutation p.R210* 0.26 TCGA-BR-4362-01 11 19259637 19259637 T - E2F8 Frame_Shift_Del p.T20Hfs*3 0.31 TCGA-BR-4362-01 11 193080 193080 C T SCGB1C1 5'UTR 0.31 TCGA-BR-4362-01 11 19955098 19955098 C T NAV2 Silent p.F459F 0.29 TCGA-BR-4362-01 11 20178177 20178177 G - DBX1 Frame_Shift_Del p.G245Efs*5 0.28 TCGA-BR-4362-01 11 20424486 20424486 T C PRMT3 Missense_Mutation p.Y243H 0.08 probably_damaging(0.981) TCGA-BR-4362-01 11 2424179 2424179 C T TSSC4 Missense_Mutation p.R106W 0.40 tolerated(0.08) benign(0.007) TCGA-BR-4362-01 11 281443 281443 G A NLRP6 Missense_Mutation p.R570H 0.33 tolerated(0.19) benign(0.004) TCGA-BR-4362-01 11 281721 281721 G A NLRP6 Missense_Mutation p.V663M 0.27 deleterious(0.04) benign(0.127) TCGA-BR-4362-01 11 32635417 32635417 T A CCDC73 Missense_Mutation p.N816I 0.19 deleterious(0.03) possibly_damaging(0.861) TCGA-BR-4362-01 11 32953933 32953933 G T QSER1 Nonsense_Mutation p.G248* 0.27 TCGA-BR-4362-01 11 33050184 33050184 C T DEPDC7 Missense_Mutation p.R210C 0.33 deleterious(0) probably_damaging(0.997) TCGA-BR-4362-01 11 34145925 34145925 G A NAT10 Missense_Mutation p.R362Q 0.24 deleterious(0.02) benign(0.104) TCGA-BR-4362-01 11 34181842 34181842 G T ABTB2 Missense_Mutation p.P819H 0.23 deleterious(0) probably_damaging(0.976) TCGA-BR-4362-01 11 35513670 35513670 C - PAMR1 Frame_Shift_Del p.G101Vfs*8 0.31 TCGA-BR-4362-01 11 3687702 3687702 G A CHRNA10 Missense_Mutation p.R330C 0.18 deleterious(0.01) possibly_damaging(0.901) TCGA-BR-4362-01 11 3744527 3744527 T C NUP98 Missense_Mutation p.D669G 0.05 tolerated(0.06) probably_damaging(0.981) TCGA-BR-4362-01 11 3845180 3845180 G A PGAP2 Missense_Mutation p.R139H 0.34 deleterious(0) probably_damaging(0.997) TCGA-BR-4362-01 11 4091365 4091367 GAA - STIM1 In_Frame_Del p.K243del 0.44 TCGA-BR-4362-01 11 44074571 44074571 C T ACCSL Missense_Mutation p.L301F 0.31 deleterious(0) probably_damaging(0.999) TCGA-BR-4362-01 11 44626950 44626950 G A CD82 Missense_Mutation p.G103R 0.19 deleterious(0) probably_damaging(0.991) TCGA-BR-4362-01 11 4470698 4470698 A C OR52K2 Silent p.G43G 0.12 TCGA-BR-4362-01 11 45671304 45671304 C T CHST1 Silent p.S390S 0.30 TCGA-BR-4362-01 11 46334005 46334005 C T CREB3L1 Missense_Mutation p.R295W 0.18 deleterious(0) probably_damaging(0.999) TCGA-BR-4362-01 11 46407256 46407256 C T CHRM4 Silent p.P284P 0.33 TCGA-BR-4362-01 11 46419427 46419427 T C AMBRA1 Missense_Mutation p.E1067G 0.15 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-BR-4362-01 11 46702288 46702288 G A ARHGAP1 Silent p.D215D 0.33 TCGA-BR-4362-01 11 47074021 47074021 T - C11orf49 Frame_Shift_Del p.L79Yfs*18 0.28 TCGA-BR-4362-01 11 47196853 47196853 A - ARFGAP2 Frame_Shift_Del p.R93Afs*43 0.30 TCGA-BR-4362-01 11 47336824 47336824 G T MADD Missense_Mutation p.Q1441H 0.29 tolerated(0.09) probably_damaging(0.998) TCGA-BR-4362-01 11 47441881 47441881 A G PSMC3 Missense_Mutation p.F354S 0.27 deleterious(0) probably_damaging(0.965) TCGA-BR-4362-01 11 490481 490481 G C PTDSS2 Missense_Mutation p.G455R 0.10 deleterious_low_confidence(0.03) benign(0.157) TCGA-BR-4362-01 11 51412117 51412117 T C OR4A5 Silent p.Q93Q 0.06 TCGA-BR-4362-01 11 55406142 55406142 T - OR4P4 Frame_Shift_Del p.F105Lfs*4 0.24 TCGA-BR-4362-01 11 55579099 55579099 T C OR5L1 Missense_Mutation p.S53P 0.27 tolerated(1) benign(0.003) TCGA-BR-4362-01 11 558069 558069 G - C11orf35 Intron 0.26 TCGA-BR-4362-01 11 58125922 58125922 A - OR5B17 Frame_Shift_Del p.F207Lfs*7 0.27 TCGA-BR-4362-01 11 5878374 5878374 G A OR52E8 Missense_Mutation p.H187Y 0.23 deleterious(0.01) probably_damaging(0.992) TCGA-BR-4362-01 11 58956242 58956242 T G DTX4 Missense_Mutation p.S324A 0.22 tolerated(0.12) benign(0.15) TCGA-BR-4362-01 11 6007283 6007283 A T OR52L1 Missense_Mutation p.L293H 0.18 deleterious(0) probably_damaging(0.999) TCGA-BR-4362-01 11 60696229 60696229 C T TMEM132A Silent p.S221S 0.28 TCGA-BR-4362-01 11 60889125 60889125 G A CD5 Missense_Mutation p.S283N 0.27 tolerated(0.18) benign(0.043) TCGA-BR-4362-01 11 61511463 61511463 C T DAGLA Silent p.D877D 0.28 TCGA-BR-4362-01 11 61533640 61533640 G - MYRF Frame_Shift_Del p.G117Afs*36 0.21 TCGA-BR-4362-01 11 61675603 61675603 G A RAB3IL1 Missense_Mutation p.R63C 0.34 deleterious(0) probably_damaging(0.978) TCGA-BR-4362-01 11 62375291 62375291 A G EML3 Silent p.S403S 0.33 TCGA-BR-4362-01 11 62620803 62620803 T C SLC3A2 5'Flank 0.06 TCGA-BR-4362-01 11 6265475 6265475 G A CNGA4 Missense_Mutation p.A522T 0.22 deleterious(0.02) benign(0.04) TCGA-BR-4362-01 11 62911109 62911109 C T SLC22A24 Missense_Mutation p.R48H 0.27 deleterious(0.03) benign(0.024) TCGA-BR-4362-01 11 63278567 63278568 - C LGALS12 Frame_Shift_Ins p.R208Qfs*82 0.22 TCGA-BR-4362-01 11 64000186 64000186 C - DNAJC4 Frame_Shift_Del p.N128Tfs*11 0.27 TCGA-BR-4362-01 11 64088156 64088156 G A PRDX5 Silent p.E110E 0.28 TCGA-BR-4362-01 11 64108903 64108903 G A CCDC88B Missense_Mutation p.R153Q 0.25 deleterious(0) probably_damaging(0.999) TCGA-BR-4362-01 11 64678326 64678326 G A ATG2A Silent p.L523L 0.35 TCGA-BR-4362-01 11 65000689 65000689 T C SLC22A20 RNA 0.30 TCGA-BR-4362-01 11 6645998 6645998 A C DCHS1 Silent p.A2416A 0.25 TCGA-BR-4362-01 11 6655431 6655431 C A DCHS1 Missense_Mutation p.S635I 0.34 deleterious(0) benign(0.367) TCGA-BR-4362-01 11 67010480 67010480 A G KDM2A Missense_Mutation p.I494V 0.34 tolerated(0.47) benign(0) TCGA-BR-4362-01 11 67068551 67068551 C T ANKRD13D Silent p.N388N 0.27 TCGA-BR-4362-01 11 67176565 67176565 C - TBC1D10C Frame_Shift_Del p.A321Rfs*100 0.38 TCGA-BR-4362-01 11 67190978 67190978 G A CARNS1 Missense_Mutation p.G587S 0.25 tolerated(0.07) benign(0.361) TCGA-BR-4362-01 11 67399140 67399140 G A TBX10 Missense_Mutation p.P365L 0.42 deleterious_low_confidence(0) benign(0.054) TCGA-BR-4362-01 11 6789899 6789899 C - OR2AG2 Frame_Shift_Del p.C97Lfs*9 0.26 TCGA-BR-4362-01 11 68370949 68370949 G A PPP6R3 Silent p.A813A 0.23 TCGA-BR-4362-01 11 686886 686886 G A DEAF1 Missense_Mutation p.A259V 0.26 deleterious(0) probably_damaging(0.952) TCGA-BR-4362-01 11 71249804 71249804 A G KRTAP5-8 3'UTR 0.17 TCGA-BR-4362-01 11 7324420 7324420 T G SYT9 Missense_Mutation p.L99R 0.26 tolerated(0.41) benign(0.004) TCGA-BR-4362-01 11 73677268 73677268 G A DNAJB13 Missense_Mutation p.R193H 0.16 deleterious(0) possibly_damaging(0.879) TCGA-BR-4362-01 11 75282937 75282937 G A SERPINH1 Missense_Mutation p.A356T 0.26 tolerated(0.26) benign(0.393) TCGA-BR-4362-01 11 770899 770899 A - PDDC1 Frame_Shift_Del p.*221E 0.30 TCGA-BR-4362-01 11 77378348 77378348 C T RSF1 Missense_Mutation p.A1314T 0.26 tolerated_low_confidence(0.21) benign(0.002) TCGA-BR-4362-01 11 82444597 82444597 C T FAM181B Missense_Mutation p.V59M 0.22 tolerated(0.12) benign(0.278) TCGA-BR-4362-01 11 82892064 82892064 T C PCF11 Missense_Mutation p.V1333A 0.15 deleterious(0) probably_damaging(0.99) TCGA-BR-4362-01 11 83770417 83770417 C T DLG2 Missense_Mutation p.R287H 0.33 deleterious(0.03) probably_damaging(0.997) TCGA-BR-4362-01 11 85367435 85367435 T C TMEM126A Silent p.L160L 0.17 TCGA-BR-4362-01 11 85396776 85396776 T G CCDC89 Missense_Mutation p.H133P 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-BR-4362-01 11 85436591 85436591 A - SYTL2 Frame_Shift_Del p.P304Qfs*2 0.24 TCGA-BR-4362-01 11 85694973 85694973 G T PICALM Silent p.G484G 0.19 TCGA-BR-4362-01 11 86663069 86663069 G A FZD4 Silent p.I243I 0.27 TCGA-BR-4362-01 11 8752619 8752619 G - ST5 Frame_Shift_Del p.P73Qfs*53 0.19 TCGA-BR-4362-01 11 88068203 88068203 C T CTSC Missense_Mutation p.A74T 0.08 deleterious(0) probably_damaging(0.966) TCGA-BR-4362-01 11 88258487 88258487 T G GRM5 Missense_Mutation p.T906P 0.25 tolerated_low_confidence(0.25) benign(0.001) TCGA-BR-4362-01 11 89173856 89173856 C A NOX4 Missense_Mutation p.V159F 0.11 deleterious(0) possibly_damaging(0.756) TCGA-BR-4362-01 11 92577541 92577541 C T FAT3 Missense_Mutation p.R3670W 0.28 possibly_damaging(0.899) TCGA-BR-4362-01 11 94113477 94113477 C T GPR83 Silent p.Q370Q 0.19 TCGA-BR-4362-01 11 9450086 9450087 - A IPO7 Frame_Shift_Ins p.I448Dfs*3 0.20 TCGA-BR-4362-01 11 96124882 96124882 T C JRKL Missense_Mutation p.W357R 0.16 tolerated(0.8) probably_damaging(0.992) TCGA-BR-4362-01 11 9983568 9983568 T G SBF2 Missense_Mutation p.N599T 0.28 tolerated(0.07) probably_damaging(0.919) TCGA-BR-4362-01 12 100166822 100166822 T G ANKS1B Missense_Mutation p.K336Q 0.24 tolerated(0.1) probably_damaging(0.94) TCGA-BR-4362-01 12 101763573 101763573 G A UTP20 Silent p.E2153E 0.11 TCGA-BR-4362-01 12 101767239 101767239 G A UTP20 Silent p.T2313T 0.22 TCGA-BR-4362-01 12 102025445 102025445 G A MYBPC1 Missense_Mutation p.S104N 0.05 deleterious(0.02) probably_damaging(0.993) TCGA-BR-4362-01 12 1025529 1025529 C T RAD52 Silent p.P282P 0.24 TCGA-BR-4362-01 12 104063344 104063344 A G STAB2 Missense_Mutation p.Y733C 0.23 deleterious(0.04) possibly_damaging(0.873) TCGA-BR-4362-01 12 109042423 109042423 G A CORO1C Silent p.D421D 0.21 TCGA-BR-4362-01 12 109523747 109523747 C T USP30 3'UTR 0.33 TCGA-BR-4362-01 12 109702967 109702967 G T ACACB Missense_Mutation p.R2332L 0.21 deleterious(0.01) possibly_damaging(0.675) TCGA-BR-4362-01 12 109826650 109826650 G A MYO1H Splice_Site p.X42_splice 0.24 TCGA-BR-4362-01 12 109889420 109889420 G A KCTD10 Missense_Mutation p.R308W 0.25 deleterious_low_confidence(0) possibly_damaging(0.876) TCGA-BR-4362-01 12 109889456 109889456 G A KCTD10 Missense_Mutation p.R296C 0.27 deleterious_low_confidence(0) possibly_damaging(0.876) TCGA-BR-4362-01 12 110734412 110734412 T C ATP2A2 Silent p.N111N 0.07 TCGA-BR-4362-01 12 110927860 110927860 A - FAM216A Frame_Shift_Del p.K249Rfs*6 0.20 TCGA-BR-4362-01 12 110929774 110929775 - A VPS29 3'UTR 0.27 TCGA-BR-4362-01 12 113756814 113756814 G A SLC8B1 Missense_Mutation p.R253W 0.25 tolerated(0.11) benign(0.001) TCGA-BR-4362-01 12 117627076 117627076 G A FBXO21 Missense_Mutation p.R111W 0.28 deleterious(0) benign(0.075) TCGA-BR-4362-01 12 118511707 118511707 G - VSIG10 Frame_Shift_Del p.P339Lfs*7 0.32 TCGA-BR-4362-01 12 119419710 119419710 A G SRRM4 Missense_Mutation p.E8G 0.23 deleterious_low_confidence(0.01) unknown(0) TCGA-BR-4362-01 12 120510351 120510351 C T CCDC64 Missense_Mutation p.R376C 0.30 deleterious(0) probably_damaging(0.999) TCGA-BR-4362-01 12 121678610 121678610 A G CAMKK2 Silent p.S553S 0.18 TCGA-BR-4362-01 12 121855521 121855521 T C RNF34 Missense_Mutation p.V148A 0.04 deleterious(0) probably_damaging(0.995) TCGA-BR-4362-01 12 122219159 122219159 T C TMEM120B 3'UTR 0.29 TCGA-BR-4362-01 12 123060120 123060120 T C KNTC1 Missense_Mutation p.Y805H 0.25 tolerated(0.55) benign(0.021) TCGA-BR-4362-01 12 123334461 123334461 T G HIP1R Missense_Mutation p.Y133D 0.08 deleterious(0) probably_damaging(0.965) TCGA-BR-4362-01 12 124111688 124111688 C T EIF2B1 Missense_Mutation p.A129T 0.19 deleterious(0.01) possibly_damaging(0.529) TCGA-BR-4362-01 12 124409638 124409638 G T DNAH10 Missense_Mutation p.L3818F 0.36 benign(0.057) TCGA-BR-4362-01 12 124419276 124419276 A C DNAH10 Missense_Mutation p.K4411T 0.21 benign(0.139) TCGA-BR-4362-01 12 124915170 124915170 C T NCOR2 Missense_Mutation p.R349H 0.29 unknown(0) TCGA-BR-4362-01 12 124968140 124968140 A G NCOR2 Splice_Site p.X137_splice 0.40 TCGA-BR-4362-01 12 125397600 125397600 T C UBC Missense_Mutation p.T240A 0.04 deleterious(0.04) benign(0.228) TCGA-BR-4362-01 12 132491389 132491389 A T EP400 Missense_Mutation p.I1091F 0.25 unknown(0) TCGA-BR-4362-01 12 133197136 133197136 G T P2RX2 Missense_Mutation p.K247N 0.26 tolerated(0.37) benign(0.133) TCGA-BR-4362-01 12 133254211 133254211 C T POLE Missense_Mutation p.D225N 0.34 deleterious(0) probably_damaging(1) TCGA-BR-4362-01 12 14927470 14927470 G A H2AFJ Silent p.A22A 0.31 TCGA-BR-4362-01 12 19514518 19514518 A - PLEKHA5 Frame_Shift_Del p.T1165Lfs*17 0.32 TCGA-BR-4362-01 12 26568326 26568326 C T ITPR2 Missense_Mutation p.V2406I 0.28 deleterious(0.02) benign(0.258) TCGA-BR-4362-01 12 26640150 26640150 T - ITPR2 Frame_Shift_Del p.K1802Sfs*13 0.28 TCGA-BR-4362-01 12 32760948 32760948 C T FGD4 Missense_Mutation p.R351W 0.30 deleterious(0.01) probably_damaging(1) TCGA-BR-4362-01 12 33031126 33031126 C T PKP2 Missense_Mutation p.V230I 0.27 tolerated(0.09) benign(0.048) TCGA-BR-4362-01 12 40041751 40041751 T G C12orf40 Missense_Mutation p.L181R 0.12 deleterious(0.01) possibly_damaging(0.648) TCGA-BR-4362-01 12 41365252 41365252 T C CNTN1 Intron 0.17 TCGA-BR-4362-01 12 420145 420145 G A KDM5A Missense_Mutation p.P1041L 0.28 deleterious(0.04) possibly_damaging(0.477) TCGA-BR-4362-01 12 4723002 4723002 T - DYRK4 3'UTR 0.47 TCGA-BR-4362-01 12 48144859 48144859 C T RAPGEF3 Missense_Mutation p.A215T 0.33 deleterious(0) probably_damaging(1) TCGA-BR-4362-01 12 48375934 48375936 CAA - COL2A1 In_Frame_Del p.V770del 0.41 TCGA-BR-4362-01 12 48391986 48391986 T C COL2A1 Splice_Site p.X104_splice 0.32 TCGA-BR-4362-01 12 48866788 48866788 A G ANP32D Missense_Mutation p.N114S 0.04 tolerated(0.18) benign(0.007) TCGA-BR-4362-01 12 48921860 48921860 C T OR8S1 Missense_Mutation p.R352C 0.35 benign(0.001) TCGA-BR-4362-01 12 49434005 49434005 G - KMT2D Frame_Shift_Del p.N2517Ifs*26 0.29 TCGA-BR-4362-01 12 50188924 50188924 C T NCKAP5L Missense_Mutation p.A907T 0.18 tolerated(0.55) benign(0.001) TCGA-BR-4362-01 12 50190190 50190190 G A NCKAP5L Nonsense_Mutation p.R485* 0.20 TCGA-BR-4362-01 12 50475482 50475482 C T ASIC1 3'UTR 0.27 TCGA-BR-4362-01 12 51392999 51392999 A - SLC11A2 Frame_Shift_Del p.F240Lfs*19 0.27 TCGA-BR-4362-01 12 51492670 51492670 T C TFCP2 Silent p.T436T 0.18 TCGA-BR-4362-01 12 52758133 52758133 G A KRT85 Missense_Mutation p.A216V 0.22 tolerated(0.27) probably_damaging(0.996) TCGA-BR-4362-01 12 52981585 52981585 G A KRT72 Silent p.C380C 0.22 TCGA-BR-4362-01 12 53045454 53045454 C T KRT2 Missense_Mutation p.S158N 0.21 tolerated(0.08) benign(0.288) TCGA-BR-4362-01 12 53554090 53554090 C T CSAD Missense_Mutation p.R354H 0.22 tolerated(0.16) benign(0.017) TCGA-BR-4362-01 12 53825046 53825046 G A AMHR2 Missense_Mutation p.R504H 0.31 deleterious(0) possibly_damaging(0.812) TCGA-BR-4362-01 12 56295983 56295983 C G WIBG Missense_Mutation p.K96N 0.24 deleterious(0) probably_damaging(0.98) TCGA-BR-4362-01 12 56478854 56478854 G A ERBB3 Missense_Mutation p.V104M 0.28 deleterious(0.05) possibly_damaging(0.789) TCGA-BR-4362-01 12 56482369 56482369 C A ERBB3 Missense_Mutation p.P306H 0.27 deleterious(0) probably_damaging(1) TCGA-BR-4362-01 12 56559290 56559290 T C SMARCC2 Missense_Mutation p.H984R 0.27 tolerated(0.11) unknown(0) TCGA-BR-4362-01 12 56749288 56749288 G T STAT2 Missense_Mutation p.P137H 0.23 tolerated(0.09) possibly_damaging(0.88) TCGA-BR-4362-01 12 57038606 57038606 A G ATP5B Silent p.I148I 0.27 TCGA-BR-4362-01 12 57389924 57389924 C G GPR182 Missense_Mutation p.L311V 0.12 tolerated(0.09) probably_damaging(0.919) TCGA-BR-4362-01 12 57485450 57485450 C - NAB2 Frame_Shift_Del p.P211Lfs*58 0.25 TCGA-BR-4362-01 12 57499094 57499094 G - STAT6 Frame_Shift_Del p.Q281Rfs*3 0.28 TCGA-BR-4362-01 12 57548011 57548011 G A LRP1 Missense_Mutation p.D288N 0.26 possibly_damaging(0.851) TCGA-BR-4362-01 12 57674225 57674225 T C R3HDM2 Silent p.Q406Q 0.05 TCGA-BR-4362-01 12 57860075 57860075 G - GLI1 Frame_Shift_Del p.G274Afs*6 0.34 TCGA-BR-4362-01 12 57864151 57864151 G A GLI1 Missense_Mutation p.S543N 0.27 tolerated(0.47) benign(0.011) TCGA-BR-4362-01 12 57920920 57920920 C T MBD6 Silent p.F664F 0.29 TCGA-BR-4362-01 12 57922311 57922311 C - MBD6 Frame_Shift_Del p.P931Lfs*15 0.23 TCGA-BR-4362-01 12 64878159 64878159 C T TBK1 Nonsense_Mutation p.R357* 0.60 TCGA-BR-4362-01 12 65088630 65088630 C T RASSF3 Missense_Mutation p.R219C 0.32 deleterious(0.01) benign(0.176) TCGA-BR-4362-01 12 662881 662881 G T B4GALNT3 Missense_Mutation p.G598C 0.27 deleterious(0.01) possibly_damaging(0.711) TCGA-BR-4362-01 12 66531769 66531769 G A TMBIM4 Missense_Mutation p.R230W 0.18 deleterious(0) probably_damaging(0.993) TCGA-BR-4362-01 12 66856867 66856867 G A GRIP1 Silent p.G293G 0.17 TCGA-BR-4362-01 12 66909462 66909462 T C GRIP1 Missense_Mutation p.S221G 0.23 deleterious(0.02) benign(0.212) TCGA-BR-4362-01 12 6701715 6701715 A - CHD4 Frame_Shift_Del p.L931Wfs*13 0.24 TCGA-BR-4362-01 12 6760339 6760339 T G ING4 3'UTR 0.29 TCGA-BR-4362-01 12 69042539 69042539 G A RAP1B Missense_Mutation p.G12E 0.08 deleterious(0) probably_damaging(1) TCGA-BR-4362-01 12 6954973 6954973 G A GNB3 Intron 0.23 TCGA-BR-4362-01 12 69756672 69756672 A G YEATS4 Silent p.K52K 0.05 TCGA-BR-4362-01 12 69968485 69968485 G A FRS2 Missense_Mutation p.R426H 0.25 deleterious(0) probably_damaging(0.998) TCGA-BR-4362-01 12 7064594 7064594 C A PTPN6 Missense_Mutation p.N231K 0.25 tolerated(0.13) benign(0.095) TCGA-BR-4362-01 12 70964915 70964915 G A PTPRB Silent p.T1087T 0.38 TCGA-BR-4362-01 12 7249730 7249730 G A C1RL Nonsense_Mutation p.Q241* 0.41 TCGA-BR-4362-01 12 73046163 73046163 G A TRHDE Missense_Mutation p.V868I 0.28 deleterious(0.02) possibly_damaging(0.65) TCGA-BR-4362-01 12 76784295 76784295 A T OSBPL8 Missense_Mutation p.S358T 0.12 tolerated(0.11) possibly_damaging(0.872) TCGA-BR-4362-01 12 7848094 7848094 G A GDF3 Silent p.G77G 0.09 TCGA-BR-4362-01 12 8290779 8290779 G A CLEC4A Missense_Mutation p.V204I 0.17 deleterious(0.03) possibly_damaging(0.908) TCGA-BR-4362-01 12 8666271 8666271 A - CLEC4D 5'UTR 0.46 TCGA-BR-4362-01 12 99640367 99640367 T - ANKS1B Frame_Shift_Del p.S678Afs*27 0.12 TCGA-BR-4362-01 13 100617520 100617520 C T ZIC5 3'UTR 0.38 TCGA-BR-4362-01 13 102368038 102368038 T G ITGBL1 3'UTR 0.19 TCGA-BR-4362-01 13 103282504 103282504 A G TPP2 Silent p.K401K 0.10 TCGA-BR-4362-01 13 109318381 109318382 - T MYO16 Frame_Shift_Ins p.Q39Sfs*35 0.12 TCGA-BR-4362-01 13 110802784 110802784 T C COL4A1 Missense_Mutation p.T1646A 0.20 unknown(0) TCGA-BR-4362-01 13 110859230 110859230 T - COL4A1 Frame_Shift_Del p.G264Vfs*50 0.21 TCGA-BR-4362-01 13 111286940 111286940 G A CARKD Missense_Mutation p.A182T 0.20 deleterious(0.01) probably_damaging(1) TCGA-BR-4362-01 13 114507957 114507957 C T TMEM255B Missense_Mutation p.P257S 0.20 tolerated(0.23) benign(0.044) TCGA-BR-4362-01 13 114780718 114780720 AGA - RASA3 In_Frame_Del p.F457del 0.23 TCGA-BR-4362-01 13 114786967 114786967 G A RASA3 Missense_Mutation p.A233V 0.30 tolerated(0.21) probably_damaging(0.998) TCGA-BR-4362-01 13 20638643 20638643 C T ZMYM2 Silent p.G1030G 0.15 TCGA-BR-4362-01 13 21563416 21563416 G A LATS2 Missense_Mutation p.T168M 0.22 deleterious(0.03) possibly_damaging(0.542) TCGA-BR-4362-01 13 23853606 23853606 T G SGCG Missense_Mutation p.L165R 0.16 deleterious(0) probably_damaging(1) TCGA-BR-4362-01 13 23912055 23912055 G A SACS Missense_Mutation p.S1987F 0.34 probably_damaging(0.996) TCGA-BR-4362-01 13 25887102 25887102 C T NUPL1 Missense_Mutation p.A123V 0.06 deleterious(0.01) benign(0.13) TCGA-BR-4362-01 13 26787929 26787930 - A RNF6 3'UTR 0.25 TCGA-BR-4362-01 13 32910761 32910762 AA - BRCA2 Frame_Shift_Del p.L759Ffs*3 0.21 TCGA-BR-4362-01 13 33703571 33703571 G T STARD13 Missense_Mutation p.L415I 0.35 deleterious(0.01) probably_damaging(0.998) TCGA-BR-4362-01 13 36686055 36686055 T G DCLK1 Missense_Mutation p.K225T 0.14 deleterious(0) unknown(0) TCGA-BR-4362-01 13 36909272 36909272 A - SPG20 Frame_Shift_Del p.F232Lfs*2 0.13 TCGA-BR-4362-01 13 37583725 37583726 - A SUPT20H 3'UTR 0.24 TCGA-BR-4362-01 13 37607598 37607598 C T SUPT20H Missense_Mutation p.R232H 0.19 tolerated(0.58) benign(0.002) TCGA-BR-4362-01 13 37679145 37679145 T - CSNK1A1L Frame_Shift_Del p.D84Tfs*5 0.36 TCGA-BR-4362-01 13 39264653 39264653 A G FREM2 Missense_Mutation p.T1058A 0.13 deleterious(0.04) possibly_damaging(0.599) TCGA-BR-4362-01 13 39343783 39343783 C T FREM2 Nonsense_Mutation p.Q1827* 0.48 TCGA-BR-4362-01 13 41705324 41767068 13:41705324-41767068 - KBTBD6 large deletion 0.20 TCGA-BR-4362-01 13 42764582 42764582 G C DGKH Missense_Mutation p.Q652H 0.22 tolerated(0.1) benign(0.002) TCGA-BR-4362-01 13 42773803 42773803 A - DGKH Frame_Shift_Del p.K797Nfs*9 0.30 TCGA-BR-4362-01 13 46358019 46358019 C T SIAH3 Silent p.T103T 0.54 TCGA-BR-4362-01 13 48562777 48562777 T G SUCLA2 Missense_Mutation p.T145P 0.11 deleterious(0) probably_damaging(0.994) TCGA-BR-4362-01 13 49772224 49772224 A C FNDC3A Missense_Mutation p.E866A 0.16 tolerated(0.38) benign(0.001) TCGA-BR-4362-01 13 52515321 52515321 C T ATP7B Missense_Mutation p.R1151H 0.48 deleterious(0) probably_damaging(1) TCGA-BR-4362-01 13 52598544 52598544 T C ALG11 Silent p.N226N 0.05 TCGA-BR-4362-01 13 53277901 53277901 G A LECT1 Silent p.H278H 0.24 TCGA-BR-4362-01 13 67801672 67801672 T C PCDH9 Missense_Mutation p.R301G 0.18 deleterious(0.03) probably_damaging(0.938) TCGA-BR-4362-01 13 75886963 75886963 A G TBC1D4 Missense_Mutation p.V765A 0.22 tolerated(0.15) benign(0.04) TCGA-BR-4362-01 13 77638831 77638832 - T MYCBP2 Frame_Shift_Ins p.N4159Kfs*18 0.20 TCGA-BR-4362-01 14 100380551 100380551 C T EML1 Silent p.A529A 0.21 TCGA-BR-4362-01 14 100728744 100728744 T C YY1 Silent p.P261P 0.23 TCGA-BR-4362-01 14 101341422 101341422 T C MIR665 RNA 0.27 TCGA-BR-4362-01 14 101418266 101418266 T C SNORD114-2 RNA 0.24 TCGA-BR-4362-01 14 102792994 102792994 T C ZNF839 Missense_Mutation p.S321P 0.24 deleterious(0) probably_damaging(0.996) TCGA-BR-4362-01 14 103571411 103571411 T C EXOC3L4 Splice_Site p.X489_splice 0.19 TCGA-BR-4362-01 14 103802217 103802217 G T EIF5 Missense_Mutation p.R7L 0.04 deleterious(0) benign(0.344) TCGA-BR-4362-01 14 103802238 103802238 A G EIF5 Missense_Mutation p.Y14C 0.08 deleterious(0.02) benign(0.131) TCGA-BR-4362-01 14 105353852 105353854 GGA - CEP170B In_Frame_Del p.E1094del 0.17 TCGA-BR-4362-01 14 105406625 105406625 C T AHNAK2 Missense_Mutation p.G5055R 0.26 probably_damaging(0.928) TCGA-BR-4362-01 14 105410125 105410125 T G AHNAK2 Missense_Mutation p.K3888T 0.06 probably_damaging(0.979) TCGA-BR-4362-01 14 106091275 106091275 C T IGHG4 Missense_Mutation p.G207S 0.09 tolerated(0.55) benign(0.002) TCGA-BR-4362-01 14 106539202 106539202 G A IGHV1-8 Silent p.N76N 0.63 TCGA-BR-4362-01 14 107013089 107013089 A G IGHV3-49 Missense_Mutation p.F69S 0.22 tolerated_low_confidence(0.4) possibly_damaging(0.729) TCGA-BR-4362-01 14 20296294 20296294 T G OR4N2 Silent p.S229S 0.10 TCGA-BR-4362-01 14 20849766 20849766 G A TEP1 Missense_Mutation p.R1502C 0.13 tolerated(0.13) benign(0.001) TCGA-BR-4362-01 14 21552988 21552988 G A ARHGEF40 Missense_Mutation p.R1289H 0.23 deleterious(0) probably_damaging(0.998) TCGA-BR-4362-01 14 21792816 21792816 C T RPGRIP1 Missense_Mutation p.S601L 0.34 tolerated(0.13) possibly_damaging(0.856) TCGA-BR-4362-01 14 21830483 21830483 T C SUPT16H Missense_Mutation p.N556D 0.22 deleterious(0.01) probably_damaging(0.997) TCGA-BR-4362-01 14 22038071 22038071 G - OR10G3 Frame_Shift_Del p.L269Wfs*7 0.29 TCGA-BR-4362-01 14 23523477 23523477 C T CDH24 Missense_Mutation p.R282Q 0.26 tolerated(0.15) benign(0.01) TCGA-BR-4362-01 14 23794494 23794494 A - BCL2L2-PABPN1 Frame_Shift_Del 0.31 TCGA-BR-4362-01 14 23853917 23853917 T C MYH6 Missense_Mutation p.M1767V 0.21 deleterious(0.02) possibly_damaging(0.907) TCGA-BR-4362-01 14 24108526 24108526 C T DHRS2 Silent p.H93H 0.25 TCGA-BR-4362-01 14 24838596 24838596 G T NFATC4 Intron 0.33 TCGA-BR-4362-01 14 25325269 25325269 A - STXBP6 Frame_Shift_Del p.F108Lfs*5 0.30 TCGA-BR-4362-01 14 30068878 30068878 T G PRKD1 Missense_Mutation p.K684T 0.24 deleterious(0) probably_damaging(0.969) TCGA-BR-4362-01 14 34269414 34269414 C T NPAS3 Missense_Mutation p.P634L 0.26 tolerated_low_confidence(0.05) probably_damaging(0.982) TCGA-BR-4362-01 14 36841164 36841164 T A DPPA3P2 RNA 0.19 TCGA-BR-4362-01 14 37754647 37754647 A - MIPOL1 Frame_Shift_Del p.V208Cfs*2 0.36 TCGA-BR-4362-01 14 39703369 39703370 AA - MIA2 Frame_Shift_Del p.K18Vfs*12 0.28 TCGA-BR-4362-01 14 42356770 42356770 T C LRFN5 Silent p.P314P 0.05 TCGA-BR-4362-01 14 42357187 42357187 T A LRFN5 Silent p.G453G 0.08 TCGA-BR-4362-01 14 45501482 45501482 C T FAM179B Missense_Mutation p.H1239Y 0.15 deleterious(0.02) benign(0.382) TCGA-BR-4362-01 14 45542738 45542738 G A FAM179B Missense_Mutation p.D1713N 0.25 tolerated(0.12) benign(0.008) TCGA-BR-4362-01 14 47120878 47120878 C T RPL10L Missense_Mutation p.R21H 0.30 tolerated(0.07) benign(0.035) TCGA-BR-4362-01 14 51387719 51387719 G A PYGL Missense_Mutation p.R243C 0.26 deleterious(0) probably_damaging(0.995) TCGA-BR-4362-01 14 51561516 51561516 G - TRIM9 Frame_Shift_Del p.Q48Rfs*21 0.23 TCGA-BR-4362-01 14 52194809 52194809 A C FRMD6 3'UTR 0.22 TCGA-BR-4362-01 14 52485867 52485867 G T NID2 Missense_Mutation p.F980L 0.33 tolerated(0.18) benign(0.285) TCGA-BR-4362-01 14 55848812 55848812 G A ATG14 Nonsense_Mutation p.R249* 0.09 TCGA-BR-4362-01 14 56757153 56757153 G A PELI2 Silent p.S225S 0.33 TCGA-BR-4362-01 14 58604793 58604793 G A C14orf37 Silent p.N428N 0.30 TCGA-BR-4362-01 14 60903608 60903608 A C C14orf39 Silent p.G573G 0.23 TCGA-BR-4362-01 14 60903657 60903657 A T C14orf39 Missense_Mutation p.F557Y 0.23 deleterious(0) possibly_damaging(0.682) TCGA-BR-4362-01 14 65409455 65409456 AG - GPX2 5'UTR 0.34 TCGA-BR-4362-01 14 69392309 69392309 G A ACTN1 Silent p.G62G 0.23 TCGA-BR-4362-01 14 69588976 69588976 A - DCAF5 Frame_Shift_Del p.C106Afs*45 0.27 TCGA-BR-4362-01 14 70171406 70171406 C T KIAA0247 Silent p.L135L 0.15 TCGA-BR-4362-01 14 70346477 70346477 C T SMOC1 Missense_Mutation p.R28C 0.20 deleterious(0.01) possibly_damaging(0.453) TCGA-BR-4362-01 14 70634917 70634917 C A SLC8A3 Missense_Mutation p.A75S 0.21 tolerated(0.05) probably_damaging(0.936) TCGA-BR-4362-01 14 70713236 70713236 G A ADAM21P1 RNA 0.04 TCGA-BR-4362-01 14 70924985 70924985 G T ADAM21 Nonsense_Mutation p.G257* 0.28 TCGA-BR-4362-01 14 71462617 71462617 C T PCNX Silent p.G868G 0.23 TCGA-BR-4362-01 14 72924983 72924983 A G RGS6 Silent p.E80E 0.29 TCGA-BR-4362-01 14 73985802 73985802 G A HEATR4 Missense_Mutation p.R379W 0.08 tolerated(0.07) benign(0.025) TCGA-BR-4362-01 14 74401052 74401052 A G FAM161B Silent p.G680G 0.07 TCGA-BR-4362-01 14 74824463 74824463 G - VRTN Frame_Shift_Del p.G328Afs*47 0.23 TCGA-BR-4362-01 14 75130505 75130505 G T AREL1 Missense_Mutation p.P797H 0.32 deleterious(0) probably_damaging(1) TCGA-BR-4362-01 14 75373805 75373805 C T RPS6KL1 Missense_Mutation p.R521Q 0.27 tolerated(0.35) benign(0.026) TCGA-BR-4362-01 14 75376763 75376763 A C RPS6KL1 Silent p.A251A 0.04 TCGA-BR-4362-01 14 75580066 75580066 C T NEK9 Missense_Mutation p.R305H 0.24 tolerated(0.52) benign(0.007) TCGA-BR-4362-01 14 77576173 77576173 T C CIPC Missense_Mutation p.L52P 0.26 tolerated(0.07) probably_damaging(0.999) TCGA-BR-4362-01 14 77794336 77794336 C T GSTZ1 Missense_Mutation p.R100C 0.27 deleterious(0) probably_damaging(0.992) TCGA-BR-4362-01 14 79175585 79175585 G A NRXN3 Missense_Mutation p.R43H 0.30 deleterious(0.01) probably_damaging(0.921) TCGA-BR-4362-01 14 80164262 80164262 C T NRXN3 Silent p.R929R 0.15 TCGA-BR-4362-01 14 80327886 80327886 G A NRXN3 Intron 0.25 TCGA-BR-4362-01 14 89091345 89091345 C T EML5 Missense_Mutation p.G1623R 0.25 deleterious(0) probably_damaging(0.945) TCGA-BR-4362-01 14 89202717 89202717 C T EML5 Missense_Mutation p.R347H 0.23 tolerated(0.19) benign(0.02) TCGA-BR-4362-01 14 91642369 91642369 G A C14orf159 Silent p.P233P 0.28 TCGA-BR-4362-01 14 93814398 93814398 T - COX8C Frame_Shift_Del p.F52Lfs*5 0.26 TCGA-BR-4362-01 14 94568188 94568188 G A IFI27L1 Silent p.A30A 0.19 TCGA-BR-4362-01 14 94595893 94595893 A G IFI27L2 Splice_Site p.X3_splice 0.23 TCGA-BR-4362-01 14 96794874 96794874 T - ATG2B Splice_Site p.X659_splice 0.21 TCGA-BR-4362-01 15 100332612 100332612 G - AC090825.1 3'Flank 0.21 TCGA-BR-4362-01 15 100636574 100636574 G A ADAMTS17 Silent p.H708H 0.16 TCGA-BR-4362-01 15 101833280 101833280 A - SNRPA1 Frame_Shift_Del p.P61Lfs*3 0.16 TCGA-BR-4362-01 15 101887963 101887963 C T PCSK6 Intron 0.19 TCGA-BR-4362-01 15 102516488 102516488 C - WASH3P 3'Flank 0.14 TCGA-BR-4362-01 15 23931581 23931581 A G NDN Missense_Mutation p.W262R 0.09 deleterious(0) probably_damaging(0.999) TCGA-BR-4362-01 15 25220628 25220628 T C SNRPN Missense_Mutation p.C43R 0.26 tolerated(0.06) benign(0.179) TCGA-BR-4362-01 15 25427458 25427458 C A SNORD115-6 3'Flank 0.20 TCGA-BR-4362-01 15 28202861 28202861 C T OCA2 Missense_Mutation p.V553I 0.25 tolerated(0.4) possibly_damaging(0.683) TCGA-BR-4362-01 15 28211897 28211897 C T OCA2 Silent p.P525P 0.28 TCGA-BR-4362-01 15 28413691 28413691 C T HERC2 Silent p.P3425P 0.37 TCGA-BR-4362-01 15 33261050 33261050 A C FMN1 Missense_Mutation p.L728R 0.16 tolerated_low_confidence(0.23) unknown(0) TCGA-BR-4362-01 15 34064222 34064222 T G RYR3 Missense_Mutation p.L2973R 0.10 possibly_damaging(0.898) TCGA-BR-4362-01 15 40564623 40564623 C T PAK6 Missense_Mutation p.R353C 0.33 deleterious(0.01) possibly_damaging(0.847) TCGA-BR-4362-01 15 40590804 40590804 T A PLCB2 Missense_Mutation p.N319I 0.08 deleterious(0) possibly_damaging(0.812) TCGA-BR-4362-01 15 40917332 40917333 AA - CASC5 Frame_Shift_Del p.K1651Vfs*3 0.32 TCGA-BR-4362-01 15 41795706 41795706 A G ITPKA 3'UTR 0.38 TCGA-BR-4362-01 15 42019391 42019392 AG - MGA Frame_Shift_Del p.E1149Afs*2 0.22 TCGA-BR-4362-01 15 42148707 42148707 G A SPTBN5 Silent p.A2966A 0.25 TCGA-BR-4362-01 15 42734562 42734562 G A ZNF106 Nonsense_Mutation p.R1135* 0.22 TCGA-BR-4362-01 15 43037907 43037907 T - TTBK2 3'UTR 0.33 TCGA-BR-4362-01 15 43622543 43622543 C T LCMT2 Missense_Mutation p.A49T 0.27 tolerated(0.27) benign(0.19) TCGA-BR-4362-01 15 44065384 44065384 T C ELL3 Missense_Mutation p.Y375C 0.06 deleterious(0) probably_damaging(1) TCGA-BR-4362-01 15 44944003 44944003 A G SPG11 Missense_Mutation p.V381A 0.23 tolerated(0.61) possibly_damaging(0.644) TCGA-BR-4362-01 15 45003781 45003782 CT - B2M Frame_Shift_Del p.L15Ffs*41 0.26 TCGA-BR-4362-01 15 48543969 48543969 T G SLC12A1 Splice_Site p.X648_splice 0.22 TCGA-BR-4362-01 15 48725097 48725097 T C FBN1 Silent p.G2235G 0.27 TCGA-BR-4362-01 15 48936816 48936816 C T FBN1 Missense_Mutation p.D51N 0.25 probably_damaging(0.978) TCGA-BR-4362-01 15 49776663 49776664 - A FGF7 Frame_Shift_Ins p.T185Nfs*17 0.11 TCGA-BR-4362-01 15 52901974 52901974 T C FAM214A Silent p.Q379Q 0.22 TCGA-BR-4362-01 15 53081473 53081473 C T ONECUT1 Silent p.P203P 0.33 TCGA-BR-4362-01 15 55657475 55657475 C G CCPG1 Missense_Mutation p.V247L 0.13 deleterious(0.04) possibly_damaging(0.499) TCGA-BR-4362-01 15 56393577 56393577 A G RFX7 Missense_Mutation p.V264A 0.44 deleterious(0) probably_damaging(0.995) TCGA-BR-4362-01 15 59376343 59376343 C - RNF111 Frame_Shift_Del p.P782Hfs*44 0.35 TCGA-BR-4362-01 15 60641385 60641385 C T ANXA2 Silent p.T301T 0.46 TCGA-BR-4362-01 15 60907207 60907207 G A RORA Intron 0.17 TCGA-BR-4362-01 15 62238081 62238081 C T VPS13C Missense_Mutation p.A1661T 0.07 deleterious(0.02) benign(0.323) TCGA-BR-4362-01 15 64970450 64970450 A G ZNF609 Missense_Mutation p.K1180E 0.18 deleterious(0.01) possibly_damaging(0.904) TCGA-BR-4362-01 15 67528769 67528769 A G AAGAB Missense_Mutation p.V113A 0.16 tolerated(0.07) benign(0.016) TCGA-BR-4362-01 15 69728066 69728066 A G KIF23 Missense_Mutation p.I410V 0.24 tolerated(0.44) benign(0.024) TCGA-BR-4362-01 15 75140995 75140996 - A SCAMP2 Frame_Shift_Ins p.C227Lfs*30 0.20 TCGA-BR-4362-01 15 75499804 75499804 C - C15orf39 Frame_Shift_Del p.P474Qfs*91 0.40 TCGA-BR-4362-01 15 75974705 75974705 G - CSPG4 Frame_Shift_Del p.Q1627Sfs*2 0.35 TCGA-BR-4362-01 15 76222249 76222249 G A FBXO22 Missense_Mutation p.R218H 0.26 deleterious(0) probably_damaging(0.971) TCGA-BR-4362-01 15 82336434 82336434 G A MEX3B Silent p.S259S 0.33 TCGA-BR-4362-01 15 85360124 85360124 C T ALPK3 Missense_Mutation p.A16V 0.26 deleterious_low_confidence(0) benign(0.015) TCGA-BR-4362-01 15 89195456 89195456 T G ISG20 Missense_Mutation p.L115R 0.28 tolerated(0.14) benign(0.129) TCGA-BR-4362-01 15 90023542 90023542 C A RHCG Missense_Mutation p.S207I 0.25 deleterious(0.01) possibly_damaging(0.836) TCGA-BR-4362-01 15 90454008 90454008 G A C15orf38-AP3S2 Missense_Mutation p.R46W 0.25 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-BR-4362-01 15 90610620 90610620 T C ZNF710 Missense_Mutation p.V84A 0.33 tolerated_low_confidence(1) benign(0) TCGA-BR-4362-01 15 90771824 90771824 C - SEMA4B Frame_Shift_Del p.R823Gfs*18 0.33 TCGA-BR-4362-01 15 90892352 90892352 C T GABARAPL3 Silent p.P26P 0.34 TCGA-BR-4362-01 15 90904600 90904600 G A ZNF774 3'UTR 0.29 TCGA-BR-4362-01 15 91524789 91524789 G A PRC1 Silent p.D204D 0.38 TCGA-BR-4362-01 15 99514341 99514341 C T PGPEP1L Missense_Mutation p.R23Q 0.36 tolerated(0.3) benign(0.042) TCGA-BR-4362-01 16 11219992 11219992 A G CLEC16A Missense_Mutation p.D877G 0.24 deleterious(0.04) probably_damaging(0.913) TCGA-BR-4362-01 16 138812 138812 C T NPRL3 Silent p.S476S 0.14 TCGA-BR-4362-01 16 14328066 14328066 C - MKL2 Frame_Shift_Del p.P254Hfs*23 0.31 TCGA-BR-4362-01 16 14540793 14540793 T C PARN Missense_Mutation p.K606E 0.29 tolerated_low_confidence(0.16) benign(0.003) TCGA-BR-4362-01 16 14975460 14975460 C T NOMO1 Missense_Mutation p.A982V 0.19 tolerated(0.06) possibly_damaging(0.799) TCGA-BR-4362-01 16 14976505 14976505 C T NOMO1 Missense_Mutation p.R1028W 0.20 deleterious(0) probably_damaging(0.996) TCGA-BR-4362-01 16 15978038 15978038 T - FOPNL Frame_Shift_Del p.K18Rfs*4 0.23 TCGA-BR-4362-01 16 17232375 17232375 G A XYLT1 Missense_Mutation p.T534M 0.24 deleterious(0) probably_damaging(0.992) TCGA-BR-4362-01 16 19590355 19590355 G A C16orf62 Intron 0.30 TCGA-BR-4362-01 16 2012459 2012459 T C RPS2 Intron 0.06 TCGA-BR-4362-01 16 20494494 20494494 A G ACSM2A Missense_Mutation p.R542G 0.27 deleterious(0) probably_damaging(0.999) TCGA-BR-4362-01 16 20648143 20648143 C T ACSM1 Missense_Mutation p.S406N 0.26 tolerated(1) benign(0.002) TCGA-BR-4362-01 16 20748117 20748117 T - THUMPD1 Intron 0.40 TCGA-BR-4362-01 16 20851786 20851786 G A AC004381.6 Missense_Mutation p.R541H 0.26 tolerated(0.78) benign(0) TCGA-BR-4362-01 16 21042529 21042529 G A DNAH3 Silent p.C1759C 0.11 TCGA-BR-4362-01 16 21049222 21049222 C T DNAH3 Missense_Mutation p.R1604H 0.20 deleterious(0) probably_damaging(1) TCGA-BR-4362-01 16 2106665 2106665 C T TSC2 Silent p.D223D 0.23 TCGA-BR-4362-01 16 21109952 21109952 C T DNAH3 Silent p.A835A 0.27 TCGA-BR-4362-01 16 21222833 21222833 G T ZP2 Silent p.P12P 0.23 TCGA-BR-4362-01 16 2150211 2150211 G A PKD1 Missense_Mutation p.T3223M 0.08 benign(0.219) TCGA-BR-4362-01 16 21663937 21663937 C T IGSF6 5'UTR 0.04 TCGA-BR-4362-01 16 21848760 21848760 C T NPIPB4 Silent p.A316A 0.15 TCGA-BR-4362-01 16 2223954 2223954 G A TRAF7 Missense_Mutation p.G390R 0.27 deleterious(0.05) probably_damaging(1) TCGA-BR-4362-01 16 2263803 2263803 C T PGP Missense_Mutation p.V298M 0.24 tolerated(0.29) benign(0.004) TCGA-BR-4362-01 16 23706239 23706239 T C ERN2 Missense_Mutation p.D685G 0.23 deleterious(0) probably_damaging(1) TCGA-BR-4362-01 16 24372978 24372978 T C CACNG3 Missense_Mutation p.S248P 0.07 deleterious(0) possibly_damaging(0.898) TCGA-BR-4362-01 16 24803058 24803058 G A TNRC6A Missense_Mutation p.R1032H 0.19 tolerated(0.11) benign(0.28) TCGA-BR-4362-01 16 27232205 27232205 C T KDM8 3'Flank 0.33 TCGA-BR-4362-01 16 27523220 27523220 T C GTF3C1 Missense_Mutation p.T326A 0.07 deleterious(0.01) probably_damaging(0.993) TCGA-BR-4362-01 16 27549213 27549214 - T GTF3C1 Frame_Shift_Ins p.I215Nfs*57 0.24 TCGA-BR-4362-01 16 2763683 2763683 C T PRSS27 Silent p.P175P 0.35 TCGA-BR-4362-01 16 2821440 2821441 GT - TCEB2 3'UTR 0.26 TCGA-BR-4362-01 16 28604855 28604855 G A SULT1A2 Missense_Mutation p.A136V 0.30 tolerated(0.26) benign(0.236) TCGA-BR-4362-01 16 28845512 28845512 C A ATXN2L Missense_Mutation p.H718N 0.24 deleterious(0.03) probably_damaging(0.979) TCGA-BR-4362-01 16 29990346 29990346 C T TAOK2 Missense_Mutation p.A135V 0.24 tolerated(0.18) benign(0.342) TCGA-BR-4362-01 16 30199690 30199690 G A CORO1A Silent p.L358L 0.29 TCGA-BR-4362-01 16 30387188 30387188 C T MYLPF Silent p.S17S 0.33 TCGA-BR-4362-01 16 30750440 30750440 C T SRCAP Missense_Mutation p.R3027C 0.27 unknown(0) TCGA-BR-4362-01 16 31502222 31502222 C A C16orf58 Missense_Mutation p.K447N 0.27 tolerated(0.11) benign(0.003) TCGA-BR-4362-01 16 3299587 3299587 G A MEFV Silent p.S368S 0.22 TCGA-BR-4362-01 16 33020752 33020752 A T IGHV3OR16-8 Missense_Mutation p.S54C 0.27 deleterious_low_confidence(0.02) probably_damaging(0.99) TCGA-BR-4362-01 16 3640962 3640962 C A SLX4 Missense_Mutation p.G893C 0.05 deleterious(0.02) possibly_damaging(0.503) TCGA-BR-4362-01 16 4247798 4247798 A G SRL Splice_Site p.X126_splice 0.32 TCGA-BR-4362-01 16 4312555 4312555 G A TFAP4 Silent p.D79D 0.24 TCGA-BR-4362-01 16 4322659 4322659 C A TFAP4 Missense_Mutation p.S30I 0.27 deleterious(0) possibly_damaging(0.807) TCGA-BR-4362-01 16 48248902 48248902 C T ABCC11 Missense_Mutation p.G380R 0.30 deleterious(0.03) possibly_damaging(0.902) TCGA-BR-4362-01 16 48249234 48249234 C T ABCC11 Missense_Mutation p.V325M 0.29 tolerated(0.11) possibly_damaging(0.595) TCGA-BR-4362-01 16 50102752 50102752 A C HEATR3 Missense_Mutation p.T125P 0.23 deleterious(0) possibly_damaging(0.664) TCGA-BR-4362-01 16 50667513 50667513 G T NKD1 Missense_Mutation p.G412C 0.35 tolerated(0.14) possibly_damaging(0.866) TCGA-BR-4362-01 16 50783575 50783575 C T CYLD 5'UTR 0.26 TCGA-BR-4362-01 16 53190809 53190809 T A CHD9 Missense_Mutation p.F270I 0.06 probably_damaging(0.993) TCGA-BR-4362-01 16 53263000 53263000 T - CHD9 Frame_Shift_Del p.F760Lfs*16 0.33 TCGA-BR-4362-01 16 55706069 55706069 C T SLC6A2 Missense_Mutation p.P209L 0.19 deleterious(0.01) probably_damaging(0.971) TCGA-BR-4362-01 16 57416565 57416565 C T CX3CL1 Missense_Mutation p.T272M 0.24 tolerated(0.1) possibly_damaging(0.87) TCGA-BR-4362-01 16 57416914 57416914 T C CX3CL1 Silent p.G388G 0.03 TCGA-BR-4362-01 16 57702267 57702267 C T GPR97 Missense_Mutation p.T3M 0.55 tolerated_low_confidence(0.09) benign(0.043) TCGA-BR-4362-01 16 58593706 58593706 A G CNOT1 Intron 0.29 TCGA-BR-4362-01 16 58750636 58750636 G A GOT2 Missense_Mutation p.R262C 0.11 deleterious(0.01) possibly_damaging(0.838) TCGA-BR-4362-01 16 61689544 61689544 C G CDH8 Missense_Mutation p.S579T 0.23 tolerated(0.6) benign(0.019) TCGA-BR-4362-01 16 65032470 65032470 T G CDH11 Missense_Mutation p.N173T 0.09 tolerated(0.14) benign(0.383) TCGA-BR-4362-01 16 66423350 66423351 - G CDH5 Frame_Shift_Ins p.D238Gfs*16 0.29 TCGA-BR-4362-01 16 67286608 67286608 G A SLC9A5 Silent p.L117L 0.28 TCGA-BR-4362-01 16 67516936 67516936 A G AGRP Silent p.L70L 0.26 TCGA-BR-4362-01 16 67861807 67861807 G A TSNAXIP1 Missense_Mutation p.V630M 0.35 tolerated(0.1) benign(0.152) TCGA-BR-4362-01 16 67904812 67904812 G A NUTF2 Missense_Mutation p.G127D 0.22 deleterious(0) benign(0.356) TCGA-BR-4362-01 16 67916384 67916384 T C EDC4 Missense_Mutation p.M1110T 0.33 deleterious(0) benign(0.108) TCGA-BR-4362-01 16 67976607 67976607 G A LCAT Missense_Mutation p.R164C 0.30 deleterious(0) probably_damaging(0.987) TCGA-BR-4362-01 16 69969758 69969758 G A WWP2 Silent p.A615A 0.27 TCGA-BR-4362-01 16 70708260 70708260 G A MTSS1L Silent p.D334D 0.33 TCGA-BR-4362-01 16 71683763 71683763 C T PHLPP2 Missense_Mutation p.R1001H 0.25 deleterious(0) benign(0.009) TCGA-BR-4362-01 16 72173266 72173266 T C PMFBP1 Silent p.L280L 0.07 TCGA-BR-4362-01 16 75203278 75203278 T C ZFP1 Silent p.L90L 0.23 TCGA-BR-4362-01 16 80574970 80574970 C T DYNLRB2 5'UTR 0.47 TCGA-BR-4362-01 16 81249951 81249951 G A PKD1L2 Missense_Mutation p.A121V 0.22 tolerated(0.19) benign(0.013) TCGA-BR-4362-01 16 816649 816649 T C MSLN Silent p.P412P 0.12 TCGA-BR-4362-01 16 81934374 81934376 ATC - PLCG2 In_Frame_Del p.I453del 0.33 TCGA-BR-4362-01 16 83948956 83948956 C T MLYCD Silent p.C448C 0.32 TCGA-BR-4362-01 16 84494378 84494378 A G ATP2C2 Missense_Mutation p.S818G 0.09 tolerated(0.32) benign(0.047) TCGA-BR-4362-01 16 86544748 86544748 C T FOXF1 Silent p.G191G 0.33 TCGA-BR-4362-01 16 86565850 86565850 C T MTHFSD Missense_Mutation p.D307N 0.38 tolerated(0.05) benign(0.048) TCGA-BR-4362-01 16 87677940 87677940 C T JPH3 Silent p.A153A 0.28 TCGA-BR-4362-01 16 87743249 87743249 G A KLHDC4 Missense_Mutation p.R357C 0.38 deleterious(0) probably_damaging(0.953) TCGA-BR-4362-01 17 10304992 10304992 T G MYH8 Missense_Mutation p.E933D 0.03 deleterious(0) possibly_damaging(0.814) TCGA-BR-4362-01 17 10315783 10315783 C T MYH8 Silent p.L440L 0.26 TCGA-BR-4362-01 17 11984731 11984731 C T MAP2K4 Nonsense_Mutation p.Q93* 0.26 TCGA-BR-4362-01 17 12028611 12028611 C T MAP2K4 Missense_Mutation p.P272S 0.21 deleterious(0) possibly_damaging(0.836) TCGA-BR-4362-01 17 12639588 12639588 G T MYOCD Missense_Mutation p.A176S 0.17 tolerated(0.09) benign(0.138) TCGA-BR-4362-01 17 15341231 15341231 C T CDRT4 Silent p.S105S 0.24 TCGA-BR-4362-01 17 15516133 15516133 G T RP11-385D13.1 Missense_Mutation p.S645Y 0.12 deleterious_low_confidence(0.01) probably_damaging(0.991) TCGA-BR-4362-01 17 17696716 17696716 C - RAI1 Frame_Shift_Del p.S154Afs*98 0.17 TCGA-BR-4362-01 17 17700590 17700590 C T RAI1 Missense_Mutation p.A1443V 0.32 tolerated(0.36) benign(0.011) TCGA-BR-4362-01 17 18218989 18218989 G A SMCR8 5'UTR 0.17 TCGA-BR-4362-01 17 18220589 18220589 C T SMCR8 Missense_Mutation p.P496S 0.25 tolerated(0.47) benign(0.001) TCGA-BR-4362-01 17 18418850 18418850 C - CTD-2303H24.2 RNA 0.42 TCGA-BR-4362-01 17 19216468 19216468 C - EPN2 Frame_Shift_Del p.S343Afs*108 0.26 TCGA-BR-4362-01 17 19618075 19618075 C A SLC47A2 Nonsense_Mutation p.G85* 0.06 TCGA-BR-4362-01 17 19645383 19645383 G A ALDH3A1 Missense_Mutation p.T208M 0.28 deleterious(0.01) probably_damaging(1) TCGA-BR-4362-01 17 21731489 21731489 C - UBBP4 Frame_Shift_Del p.D191Ifs*35 0.27 TCGA-BR-4362-01 17 2227145 2227145 C T SRR Missense_Mutation p.S334F 0.25 tolerated_low_confidence(0.05) benign(0.054) TCGA-BR-4362-01 17 2279017 2279019 GAG - SGSM2 In_Frame_Del p.E779del 0.28 TCGA-BR-4362-01 17 26108199 26108199 C T NOS2 Missense_Mutation p.A243T 0.29 tolerated(0.08) benign(0.096) TCGA-BR-4362-01 17 26951336 26951336 A G KIAA0100 Missense_Mutation p.M1556T 0.28 tolerated(0.34) benign(0) TCGA-BR-4362-01 17 26966334 26966334 T - KIAA0100 Frame_Shift_Del p.R410Efs*56 0.31 TCGA-BR-4362-01 17 27899538 27899538 C T TP53I13 Missense_Mutation p.R298W 0.17 deleterious(0) probably_damaging(0.949) TCGA-BR-4362-01 17 27958011 27958011 C T SSH2 Missense_Mutation p.V1374M 0.28 tolerated_low_confidence(0.13) benign(0.004) TCGA-BR-4362-01 17 29486057 29486057 T - NF1 Frame_Shift_Del p.L79Yfs*6 0.26 TCGA-BR-4362-01 17 29645818 29645818 C A EVI2A Missense_Mutation p.G95C 0.28 tolerated(0.05) possibly_damaging(0.634) TCGA-BR-4362-01 17 31322545 31322545 C T SPACA3 Silent p.A51A 0.21 TCGA-BR-4362-01 17 33768287 33768287 C T SLFN13 Missense_Mutation p.R674H 0.22 deleterious(0.02) possibly_damaging(0.716) TCGA-BR-4362-01 17 36091778 36091778 C T HNF1B Missense_Mutation p.G285S 0.28 deleterious(0.03) probably_damaging(0.993) TCGA-BR-4362-01 17 3716239 3716239 C A C17orf85 3'UTR 0.18 TCGA-BR-4362-01 17 37826335 37826335 C T PNMT Missense_Mutation p.A181V 0.20 deleterious(0.01) benign(0.364) TCGA-BR-4362-01 17 38928171 38928171 A G KRT26 Silent p.S65S 0.05 TCGA-BR-4362-01 17 38975866 38975866 C T KRT10 Missense_Mutation p.E426K 0.29 deleterious(0) probably_damaging(0.998) TCGA-BR-4362-01 17 39661808 39661808 G T KRT13 5'UTR 0.20 TCGA-BR-4362-01 17 40001941 40001941 C A KLHL10 Silent p.I416I 0.34 TCGA-BR-4362-01 17 40330908 40330908 G A KCNH4 Silent p.Y71Y 0.28 TCGA-BR-4362-01 17 40717259 40717259 A G COASY Missense_Mutation p.I468M 0.15 tolerated(0.12) benign(0.004) TCGA-BR-4362-01 17 41143362 41143362 T C RUNDC1 Missense_Mutation p.S491P 0.22 deleterious(0) probably_damaging(0.998) TCGA-BR-4362-01 17 41244853 41244853 C G BRCA1 Missense_Mutation p.V899L 0.05 deleterious(0.05) possibly_damaging(0.611) TCGA-BR-4362-01 17 41343459 41343459 C T NBR1 Missense_Mutation p.R312C 0.15 deleterious(0.03) probably_damaging(0.993) TCGA-BR-4362-01 17 41958098 41958098 T C MPP2 Missense_Mutation p.I371V 0.28 tolerated(0.06) benign(0.009) TCGA-BR-4362-01 17 42195025 42195025 C T HDAC5 5'UTR 0.38 TCGA-BR-4362-01 17 42253965 42253965 C T ASB16 Intron 0.39 TCGA-BR-4362-01 17 42266704 42266704 G - TMUB2 Frame_Shift_Del p.G118Efs*42 0.29 TCGA-BR-4362-01 17 42824781 42824781 G T DBF4B Missense_Mutation p.R321L 0.18 tolerated(0.07) benign(0.344) TCGA-BR-4362-01 17 44115975 44115975 G A KANSL1 Nonsense_Mutation p.R824* 0.27 TCGA-BR-4362-01 17 4444821 4444832 CTGCGCCTTGGT - MYBBP1A In_Frame_Del p.T1075_Q1078del 0.09 TCGA-BR-4362-01 17 45367089 45367089 A - ITGB3 Frame_Shift_Del p.N329Tfs*4 0.25 TCGA-BR-4362-01 17 45473245 45473245 C G EFCAB13 Missense_Mutation p.T616R 0.10 tolerated(0.07) benign(0.03) TCGA-BR-4362-01 17 46136704 46136704 C T NFE2L1 Missense_Mutation p.R674C 0.24 deleterious(0) probably_damaging(1) TCGA-BR-4362-01 17 4842264 4842264 C T SLC25A11 Silent p.S85S 0.27 TCGA-BR-4362-01 17 48542691 48542692 - G CHAD Frame_Shift_Ins p.T350Hfs*15 0.32 TCGA-BR-4362-01 17 48649364 48649364 C T CACNA1G Missense_Mutation p.R238W 0.37 deleterious(0) probably_damaging(1) TCGA-BR-4362-01 17 48744971 48744971 C T ABCC3 Silent p.N496N 0.16 TCGA-BR-4362-01 17 48746874 48746875 AG - ABCC3 Frame_Shift_Del p.E743Dfs*7 0.29 TCGA-BR-4362-01 17 49098616 49098616 G A SPAG9 Silent p.N298N 0.28 TCGA-BR-4362-01 17 5086767 5086767 G C ZNF594 Missense_Mutation p.T262S 0.07 tolerated(0.13) probably_damaging(0.96) TCGA-BR-4362-01 17 5290760 5290760 C T NUP88 Missense_Mutation p.R621H 0.22 deleterious(0.02) benign(0.189) TCGA-BR-4362-01 17 53046141 53046141 C T STXBP4 5'UTR 0.24 TCGA-BR-4362-01 17 54554883 54554883 G A ANKFN1 Missense_Mutation p.R606H 0.24 tolerated(0.4) possibly_damaging(0.899) TCGA-BR-4362-01 17 5462268 5462268 T - NLRP1 Frame_Shift_Del p.K583Rfs*14 0.30 TCGA-BR-4362-01 17 56324946 56324946 G - LPO Frame_Shift_Del p.E92Rfs*4 0.21 TCGA-BR-4362-01 17 56599207 56599207 G A SEPT4 Missense_Mutation p.P284S 0.31 deleterious(0.01) probably_damaging(0.981) TCGA-BR-4362-01 17 56690811 56690811 C T TEX14 Missense_Mutation p.G332S 0.23 deleterious(0) probably_damaging(0.999) TCGA-BR-4362-01 17 57057506 57057506 G A PPM1E Missense_Mutation p.S461N 0.23 deleterious(0.04) possibly_damaging(0.723) TCGA-BR-4362-01 17 57289173 57289173 T C SMG8 Splice_Site p.X587_splice 0.06 TCGA-BR-4362-01 17 57679906 57679906 C A DHX40 Silent p.T610T 0.23 TCGA-BR-4362-01 17 58024089 58024090 - A RPS6KB1 Frame_Shift_Ins p.Q509Tfs*24 0.30 TCGA-BR-4362-01 17 58234015 58234017 CTT - CA4 In_Frame_Del p.F72del 0.19 TCGA-BR-4362-01 17 60814349 60814349 C - MARCH10 Frame_Shift_Del p.E294Kfs*61 0.25 TCGA-BR-4362-01 17 61780974 61780974 G A STRADA Silent p.D427D 0.32 TCGA-BR-4362-01 17 61897648 61897650 CTT - FTSJ3 In_Frame_Del p.K741del 0.36 TCGA-BR-4362-01 17 62049563 62049563 T C SCN4A Missense_Mutation p.I139V 0.36 tolerated(0.22) benign(0) TCGA-BR-4362-01 17 62587239 62587239 C T SMURF2 Silent p.G121G 0.18 TCGA-BR-4362-01 17 6905060 6905060 C T ALOX12 Missense_Mutation p.T364I 0.29 tolerated(0.05) benign(0.25) TCGA-BR-4362-01 17 6927125 6927125 C T BCL6B Silent p.G45G 0.36 TCGA-BR-4362-01 17 7162268 7162268 T C ELP5 Intron 0.20 TCGA-BR-4362-01 17 72346594 72346594 G A KIF19 Missense_Mutation p.R423Q 0.40 tolerated(0.08) benign(0.298) TCGA-BR-4362-01 17 7249758 7249759 CT - ACAP1 Frame_Shift_Del p.C320Pfs*2 0.31 TCGA-BR-4362-01 17 7253540 7253540 G A ACAP1 Missense_Mutation p.A686T 0.25 deleterious(0) probably_damaging(0.998) TCGA-BR-4362-01 17 73227720 73227720 T C NUP85 Missense_Mutation p.F411L 0.06 tolerated(0.28) benign(0.009) TCGA-BR-4362-01 17 73654438 73654438 G A RECQL5 Silent p.Y363Y 0.14 TCGA-BR-4362-01 17 73654499 73654499 T C RECQL5 Missense_Mutation p.Y343C 0.07 deleterious(0) probably_damaging(0.999) TCGA-BR-4362-01 17 74136150 74136150 G - FOXJ1 Frame_Shift_Del p.D110Tfs*11 0.24 TCGA-BR-4362-01 17 74395938 74395938 G C UBE2O Missense_Mutation p.S407C 0.11 deleterious(0.03) benign(0.174) TCGA-BR-4362-01 17 74465822 74465822 C T AANAT Nonsense_Mutation p.Q177* 0.40 TCGA-BR-4362-01 17 7559294 7559294 C - ATP1B2 3'UTR 0.27 TCGA-BR-4362-01 17 76099610 76099610 C T TNRC6C Missense_Mutation p.A1599V 0.14 tolerated(0.31) probably_damaging(0.995) TCGA-BR-4362-01 17 76122967 76122967 C T TMC6 5'UTR 0.19 TCGA-BR-4362-01 17 76421579 76421579 G A DNAH17 Missense_Mutation p.S4353L 0.14 probably_damaging(0.992) TCGA-BR-4362-01 17 7756423 7756423 C A KDM6B Silent p.A1572A 0.18 TCGA-BR-4362-01 17 79095107 79095107 C T AATK Missense_Mutation p.D877N 0.14 deleterious(0.01) possibly_damaging(0.856) TCGA-BR-4362-01 17 79792843 79792843 G T PPP1R27 5'UTR 0.30 TCGA-BR-4362-01 17 79803764 79803764 T - P4HB Frame_Shift_Del p.N387Tfs*118 0.24 TCGA-BR-4362-01 17 79845852 79845852 A G ALYREF 3'UTR 0.62 TCGA-BR-4362-01 17 8000064 8000064 C T ALOXE3 Missense_Mutation p.A805T 0.32 tolerated(0.19) benign(0.057) TCGA-BR-4362-01 17 80021384 80021384 G A DUS1L Silent p.G119G 0.21 TCGA-BR-4362-01 17 80043423 80043423 G - FASN Frame_Shift_Del p.L1353Sfs*20 0.35 TCGA-BR-4362-01 17 80059546 80059546 G - FASN 5'Flank 0.15 TCGA-BR-4362-01 17 8077872 8077872 A G TMEM107 Missense_Mutation p.C113R 0.09 deleterious(0) possibly_damaging(0.822) TCGA-BR-4362-01 17 8140698 8140698 C T CTC1 Missense_Mutation p.V263M 0.21 deleterious(0) probably_damaging(0.96) TCGA-BR-4362-01 17 8215907 8215908 GA - ARHGEF15 Frame_Shift_Del p.E186Sfs*46 0.22 TCGA-BR-4362-01 17 8350200 8350200 C T NDEL1 Silent p.D123D 0.16 TCGA-BR-4362-01 17 9923315 9923315 A G GAS7 Intron 0.16 TCGA-BR-4362-01 18 10696408 10696408 G A PIEZO2 Silent p.F2206F 0.36 TCGA-BR-4362-01 18 11851987 11851987 G T CHMP1B Missense_Mutation p.E159D 0.42 tolerated(0.05) probably_damaging(0.926) TCGA-BR-4362-01 18 21422380 21422380 C T LAMA3 Missense_Mutation p.R1120C 0.20 possibly_damaging(0.696) TCGA-BR-4362-01 18 2718224 2718224 A - SMCHD1 Frame_Shift_Del p.M779Wfs*12 0.11 TCGA-BR-4362-01 18 28654830 28654830 G A DSC2 Silent p.D569D 0.39 TCGA-BR-4362-01 18 28991145 28991145 G A DSG4 Missense_Mutation p.A716T 0.23 tolerated(0.76) benign(0.088) TCGA-BR-4362-01 18 2937883 2937883 C T LPIN2 Silent p.V325V 0.21 TCGA-BR-4362-01 18 29867432 29867432 G A GAREM Silent p.R376R 0.26 TCGA-BR-4362-01 18 30260447 30260447 G A KLHL14 Missense_Mutation p.R452C 0.06 deleterious(0.04) possibly_damaging(0.465) TCGA-BR-4362-01 18 30275498 30275498 C T KLHL14 Missense_Mutation p.A363T 0.26 tolerated(0.38) possibly_damaging(0.892) TCGA-BR-4362-01 18 32346001 32346001 C T DTNA Silent p.C48C 0.37 TCGA-BR-4362-01 18 32391993 32391993 A C DTNA Missense_Mutation p.E173D 0.23 tolerated(0.11) probably_damaging(0.994) TCGA-BR-4362-01 18 331668 331668 T C COLEC12 Missense_Mutation p.K688R 0.22 tolerated(0.13) unknown(0) TCGA-BR-4362-01 18 348092 348092 C A COLEC12 Missense_Mutation p.A85S 0.31 tolerated(0.39) benign(0.31) TCGA-BR-4362-01 18 43205723 43205723 G A SLC14A2 Missense_Mutation p.D76N 0.34 tolerated(0.71) benign(0.001) TCGA-BR-4362-01 18 43532417 43532417 G A EPG5 Missense_Mutation p.L401F 0.33 deleterious(0.01) probably_damaging(0.986) TCGA-BR-4362-01 18 44036544 44036544 A C RNF165 Missense_Mutation p.K329T 0.24 deleterious(0) possibly_damaging(0.572) TCGA-BR-4362-01 18 47108163 47108163 T C LIPG Intron 0.09 TCGA-BR-4362-01 18 47511134 47511134 G A MYO5B Silent p.D300D 0.31 TCGA-BR-4362-01 18 50278453 50278453 C T DCC Missense_Mutation p.R41C 0.26 tolerated(0.09) possibly_damaging(0.67) TCGA-BR-4362-01 18 51851166 51851166 T - STARD6 Frame_Shift_Del p.T187Pfs*6 0.16 TCGA-BR-4362-01 18 56586354 56586354 G A ZNF532 Missense_Mutation p.A279T 0.26 tolerated(0.07) possibly_damaging(0.578) TCGA-BR-4362-01 18 61621687 61621687 C T HMSD Nonsense_Mutation p.R40* 0.22 TCGA-BR-4362-01 18 65180462 65180462 T G DSEL Missense_Mutation p.S472R 0.10 deleterious(0.01) probably_damaging(0.933) TCGA-BR-4362-01 18 67993058 67993058 A G SOCS6 Missense_Mutation p.Y385C 0.08 deleterious(0) probably_damaging(0.977) TCGA-BR-4362-01 18 7038885 7038885 T - LAMA1 Frame_Shift_Del p.N496Tfs*27 0.23 TCGA-BR-4362-01 18 7231916 7231916 C T LRRC30 Silent p.I260I 0.10 TCGA-BR-4362-01 18 73000618 73000618 G A TSHZ1 3'UTR 0.29 TCGA-BR-4362-01 18 732942 732942 T C YES1 Missense_Mutation p.T439A 0.34 deleterious(0) probably_damaging(0.996) TCGA-BR-4362-01 18 74617125 74617125 A - ZNF236 Frame_Shift_Del p.K683Nfs*28 0.24 TCGA-BR-4362-01 18 74649204 74649204 G A ZNF236 Missense_Mutation p.V1561M 0.21 tolerated(0.19) benign(0.15) TCGA-BR-4362-01 18 77659062 77659062 G A KCNG2 Missense_Mutation p.R216H 0.19 tolerated(0.49) benign(0.002) TCGA-BR-4362-01 19 10251513 10251513 C T DNMT1 Missense_Mutation p.R1156Q 0.28 deleterious(0.03) probably_damaging(0.989) TCGA-BR-4362-01 19 10260184 10260184 A G DNMT1 Missense_Mutation p.I844T 0.27 deleterious(0) possibly_damaging(0.897) TCGA-BR-4362-01 19 1074128 1074128 C T HMHA1 Silent p.D288D 0.08 TCGA-BR-4362-01 19 11526717 11526717 G A RGL3 Missense_Mutation p.A178V 0.35 tolerated(0.29) possibly_damaging(0.88) TCGA-BR-4362-01 19 11534692 11534692 G A CCDC151 Missense_Mutation p.R324C 0.06 deleterious(0) probably_damaging(0.988) TCGA-BR-4362-01 19 11979192 11979192 A G ZNF439 Silent p.K436K 0.15 TCGA-BR-4362-01 19 12501516 12501517 CA - ZNF799 Frame_Shift_Del p.C565Wfs*2 0.11 TCGA-BR-4362-01 19 12575998 12575998 G T ZNF709 Missense_Mutation p.H246Q 0.05 deleterious(0.01) probably_damaging(0.993) TCGA-BR-4362-01 19 12639171 12639171 T - ZNF564 Frame_Shift_Del p.K46Nfs*18 0.20 TCGA-BR-4362-01 19 12759983 12759984 - C MAN2B1 Frame_Shift_Ins p.S802Qfs*129 0.25 TCGA-BR-4362-01 19 12848425 12848425 A G ASNA1 Missense_Mutation p.S36G 0.17 deleterious(0) benign(0.036) TCGA-BR-4362-01 19 12962928 12962928 G T MAST1 Splice_Site p.X293_splice 0.08 TCGA-BR-4362-01 19 12977542 12977542 G A MAST1 Missense_Mutation p.R702H 0.33 tolerated(0.06) benign(0.006) TCGA-BR-4362-01 19 14000134 14000134 T C C19orf57 Missense_Mutation p.Q512R 0.21 tolerated(0.35) possibly_damaging(0.607) TCGA-BR-4362-01 19 14269309 14269309 C T LPHN1 Silent p.T740T 0.15 TCGA-BR-4362-01 19 14271040 14271040 C T LPHN1 Missense_Mutation p.A567T 0.21 deleterious(0.01) possibly_damaging(0.627) TCGA-BR-4362-01 19 1510219 1510219 C T ADAMTSL5 Silent p.Q97Q 0.33 TCGA-BR-4362-01 19 15302455 15302455 C T NOTCH3 Silent p.T272T 0.31 TCGA-BR-4362-01 19 15558926 15558926 C A WIZ Missense_Mutation p.G65C 0.31 deleterious_low_confidence(0) possibly_damaging(0.606) TCGA-BR-4362-01 19 17836734 17836734 G A MAP1S Missense_Mutation p.A181T 0.29 tolerated(0.42) benign(0.085) TCGA-BR-4362-01 19 1789638 1789638 G T ATP8B3 Missense_Mutation p.S856Y 0.38 deleterious(0.03) possibly_damaging(0.744) TCGA-BR-4362-01 19 1796808 1796808 A G ATP8B3 Missense_Mutation p.L552P 0.08 deleterious(0.01) possibly_damaging(0.611) TCGA-BR-4362-01 19 17983369 17983369 T C SLC5A5 Missense_Mutation p.Y81H 0.09 deleterious(0.01) benign(0.236) TCGA-BR-4362-01 19 18780122 18780122 G A KLHL26 3'UTR 0.23 TCGA-BR-4362-01 19 19337487 19337487 A C NCAN Missense_Mutation p.K422T 0.34 tolerated(0.31) benign(0.058) TCGA-BR-4362-01 19 19377330 19377331 CA - TM6SF2 Frame_Shift_Del p.W298Gfs*32 0.45 TCGA-BR-4362-01 19 20976703 20976703 G T ZNF66 Intron 0.08 TCGA-BR-4362-01 19 2129435 2129435 T C AP3D1 Missense_Mutation p.N205S 0.21 deleterious(0.03) possibly_damaging(0.872) TCGA-BR-4362-01 19 21350433 21350433 A G ZNF431 Missense_Mutation p.N95D 0.04 deleterious(0.03) benign(0.416) TCGA-BR-4362-01 19 21927746 21927746 A C ZNF100 Missense_Mutation p.L74V 0.10 deleterious(0.01) possibly_damaging(0.903) TCGA-BR-4362-01 19 21992387 21992387 C T ZNF43 Missense_Mutation p.C151Y 0.32 tolerated(1) benign(0.003) TCGA-BR-4362-01 19 22156330 22156330 A G ZNF208 Silent p.C502C 0.22 TCGA-BR-4362-01 19 23299823 23299823 C T ZNF730 5'UTR 0.25 TCGA-BR-4362-01 19 288132 288132 G A PPAP2C Missense_Mutation p.P52L 0.25 deleterious(0) possibly_damaging(0.796) TCGA-BR-4362-01 19 30500146 30500146 C T URI1 Silent p.D307D 0.23 TCGA-BR-4362-01 19 3118934 3118934 G - GNA11 Frame_Shift_Del p.G208Afs*16 0.27 TCGA-BR-4362-01 19 313553 313553 C T MIER2 Missense_Mutation p.R249H 0.22 deleterious(0.04) possibly_damaging(0.708) TCGA-BR-4362-01 19 31769144 31769144 C T TSHZ3 Missense_Mutation p.G519R 0.28 deleterious(0) probably_damaging(1) TCGA-BR-4362-01 19 33135359 33135359 A G ANKRD27 Missense_Mutation p.F133L 0.25 tolerated(0.26) benign(0.153) TCGA-BR-4362-01 19 35173767 35173767 T C ZNF302 Missense_Mutation p.V32A 0.31 deleterious(0) probably_damaging(0.995) TCGA-BR-4362-01 19 35501006 35501006 C T GRAMD1A Silent p.C112C 0.23 TCGA-BR-4362-01 19 35940790 35940790 G C FFAR2 Silent p.L58L 0.39 TCGA-BR-4362-01 19 362241 362241 C T THEG Missense_Mutation p.A367T 0.11 tolerated_low_confidence(0.19) benign(0.027) TCGA-BR-4362-01 19 36273690 36273690 T C ARHGAP33 Missense_Mutation p.L447P 0.30 deleterious_low_confidence(0) probably_damaging(0.947) TCGA-BR-4362-01 19 36501501 36501501 G A ALKBH6 Missense_Mutation p.R169W 0.23 tolerated(0.08) benign(0.023) TCGA-BR-4362-01 19 3728677 3728679 GTG - TJP3 In_Frame_Del p.V52del 0.29 TCGA-BR-4362-01 19 37310989 37310989 T A ZNF790 Missense_Mutation p.K86M 0.16 deleterious(0.03) possibly_damaging(0.525) TCGA-BR-4362-01 19 37879314 37879314 T C ZNF527 Silent p.L121L 0.33 TCGA-BR-4362-01 19 39009883 39009883 C T RYR1 Missense_Mutation p.R3350W 0.28 benign(0.317) TCGA-BR-4362-01 19 39038900 39038900 G A RYR1 Missense_Mutation p.R4041Q 0.30 benign(0.001) TCGA-BR-4362-01 19 39292738 39292738 C T LGALS4 Missense_Mutation p.R240H 0.30 deleterious(0) probably_damaging(0.998) TCGA-BR-4362-01 19 39600757 39600757 A G PAPL Nonstop_Mutation p.*439Wext*33 0.29 TCGA-BR-4362-01 19 39870619 39870619 C T SAMD4B Missense_Mutation p.T515M 0.30 deleterious(0.01) possibly_damaging(0.84) TCGA-BR-4362-01 19 39949665 39949665 T C SUPT5H Missense_Mutation p.L137P 0.17 deleterious(0) probably_damaging(0.986) TCGA-BR-4362-01 19 4037403 4037403 G T PIAS4 Missense_Mutation p.D392Y 0.25 deleterious(0) possibly_damaging(0.534) TCGA-BR-4362-01 19 41086254 41086254 G A SHKBP1 Missense_Mutation p.R142Q 0.36 deleterious(0.04) benign(0.02) TCGA-BR-4362-01 19 41448075 41448075 G A AC092071.1 5'Flank 0.36 TCGA-BR-4362-01 19 41808741 41808741 G A HNRNPUL1 Missense_Mutation p.R620H 0.32 tolerated(0.09) unknown(0) TCGA-BR-4362-01 19 41860649 41860649 C T B9D2 Missense_Mutation p.G162S 0.19 tolerated(0.37) benign(0.002) TCGA-BR-4362-01 19 42838298 42838298 G - MEGF8 Frame_Shift_Del p.G166Vfs*53 0.20 TCGA-BR-4362-01 19 4292852 4292852 C T TMIGD2 Missense_Mutation p.R198Q 0.18 tolerated(0.2) possibly_damaging(0.602) TCGA-BR-4362-01 19 43708390 43708390 G A PSG4 Silent p.N26N 0.30 TCGA-BR-4362-01 19 44352263 44352263 C T ZNF283 Nonsense_Mutation p.R504* 0.21 TCGA-BR-4362-01 19 4453937 4453937 G A UBXN6 Silent p.I79I 0.08 TCGA-BR-4362-01 19 44891190 44891190 C T ZNF285 Missense_Mutation p.G406D 0.24 deleterious(0) probably_damaging(0.991) TCGA-BR-4362-01 19 45655788 45655788 A T NKPD1 Missense_Mutation p.L636Q 0.31 deleterious(0) probably_damaging(0.991) TCGA-BR-4362-01 19 46020980 46020980 G A VASP Missense_Mutation p.R22Q 0.21 deleterious(0.03) unknown(0) TCGA-BR-4362-01 19 46117919 46117919 G A EML2 Missense_Mutation p.A747V 0.32 tolerated(0.21) benign(0.011) TCGA-BR-4362-01 19 46141865 46141865 C T EML2 Missense_Mutation p.R227K 0.24 tolerated(0.08) benign(0.16) TCGA-BR-4362-01 19 46443322 46443323 - C NOVA2 Frame_Shift_Ins p.K427Qfs*99 0.27 TCGA-BR-4362-01 19 47178330 47178330 C T PRKD2 Missense_Mutation p.R795H 0.26 deleterious(0) probably_damaging(0.999) TCGA-BR-4362-01 19 47217378 47217378 A G PRKD2 Intron 0.38 TCGA-BR-4362-01 19 47231155 47231155 A G STRN4 Silent p.H383H 0.10 TCGA-BR-4362-01 19 47242087 47242087 A G STRN4 Missense_Mutation p.L114P 0.12 deleterious(0) probably_damaging(0.994) TCGA-BR-4362-01 19 48977543 48977543 C T CYTH2 Missense_Mutation p.R218W 0.22 deleterious(0) probably_damaging(0.995) TCGA-BR-4362-01 19 49218105 49218106 - G MAMSTR Frame_Shift_Ins p.H163Tfs*9 0.26 TCGA-BR-4362-01 19 4932942 4932942 G A MIR4747 3'Flank 0.13 TCGA-BR-4362-01 19 49409126 49409126 C T NUCB1 Silent p.D120D 0.33 TCGA-BR-4362-01 19 4950920 4950920 G A UHRF1 RNA 0.20 TCGA-BR-4362-01 19 49933805 49933806 - G SLC17A7 Frame_Shift_Ins p.R552Qfs*32 0.25 TCGA-BR-4362-01 19 50266380 50266380 C T TSKS Missense_Mutation p.R42Q 0.29 tolerated_low_confidence(0.07) benign(0.124) TCGA-BR-4362-01 19 50304647 50304647 C - AP2A1 Frame_Shift_Del p.P520Qfs*97 0.24 TCGA-BR-4362-01 19 50455204 50455204 G A SIGLEC11 Missense_Mutation p.R592C 0.22 tolerated(0.06) benign(0.001) TCGA-BR-4362-01 19 50666247 50666247 C T IZUMO2 Missense_Mutation p.A69T 0.21 deleterious(0) possibly_damaging(0.695) TCGA-BR-4362-01 19 50862305 50862306 - C NAPSA Frame_Shift_Ins p.V333Gfs*4 0.31 TCGA-BR-4362-01 19 51830417 51830417 C - IGLON5 Frame_Shift_Del p.A246Rfs*12 0.50 TCGA-BR-4362-01 19 51848577 51848577 G A ETFB Missense_Mutation p.T310I 0.22 deleterious_low_confidence(0) possibly_damaging(0.699) TCGA-BR-4362-01 19 52825530 52825530 T C ZNF480 Missense_Mutation p.Y343H 0.06 deleterious(0.03) benign(0.324) TCGA-BR-4362-01 19 53344411 53344411 C A ZNF468 Missense_Mutation p.G379V 0.24 deleterious(0) benign(0.202) TCGA-BR-4362-01 19 53644898 53644898 G T ZNF347 Missense_Mutation p.H396N 0.26 deleterious(0) probably_damaging(0.999) TCGA-BR-4362-01 19 53740463 53740463 T A ZNF677 Missense_Mutation p.K506M 0.18 deleterious(0) possibly_damaging(0.82) TCGA-BR-4362-01 19 53994944 53994944 G A ZNF813 Silent p.T486T 0.07 TCGA-BR-4362-01 19 54297342 54297342 C T NLRP12 Silent p.A1049A 0.28 TCGA-BR-4362-01 19 54416138 54416138 C T CACNG7 Missense_Mutation p.A18V 0.25 tolerated(1) benign(0.106) TCGA-BR-4362-01 19 5455507 5455507 C T ZNRF4 Missense_Mutation p.P2L 0.21 deleterious_low_confidence(0) benign(0) TCGA-BR-4362-01 19 54626916 54626916 C T PRPF31 Silent p.S168S 0.18 TCGA-BR-4362-01 19 54649502 54649502 G A CNOT3 Missense_Mutation p.D218N 0.27 tolerated(0.13) probably_damaging(0.942) TCGA-BR-4362-01 19 54667385 54667385 C A TMC4 Intron 0.25 TCGA-BR-4362-01 19 54754833 54754833 G - LILRB5 Intron 0.34 TCGA-BR-4362-01 19 54967522 54967522 C T LENG8 Silent p.S441S 0.23 TCGA-BR-4362-01 19 55263953 55263953 T C KIR2DL3 Silent p.L336L 0.10 TCGA-BR-4362-01 19 55676795 55676795 G - DNAAF3 Frame_Shift_Del p.R157Dfs*4 0.29 TCGA-BR-4362-01 19 55687082 55687082 A G SYT5 Missense_Mutation p.F179L 0.13 deleterious(0.02) possibly_damaging(0.885) TCGA-BR-4362-01 19 55828178 55828178 C T TMEM150B Missense_Mutation p.V161I 0.26 tolerated(0.29) benign(0.005) TCGA-BR-4362-01 19 55994442 55994442 G A ZNF628 Missense_Mutation p.G628S 0.29 tolerated(0.06) probably_damaging(0.993) TCGA-BR-4362-01 19 55994860 55994860 C T ZNF628 Missense_Mutation p.A767V 0.30 tolerated(0.06) unknown(0) TCGA-BR-4362-01 19 56321607 56321607 G A NLRP11 Silent p.D123D 0.23 TCGA-BR-4362-01 19 56369846 56369846 C A NLRP4 Missense_Mutation p.L363M 0.22 tolerated(0.23) benign(0.104) TCGA-BR-4362-01 19 56515446 56515446 C T NLRP5 Missense_Mutation p.R143W 0.28 deleterious(0) probably_damaging(0.994) TCGA-BR-4362-01 19 56736058 56736058 G A ZSCAN5A Nonsense_Mutation p.R120* 0.20 TCGA-BR-4362-01 19 5699204 5699204 C T LONP1 Missense_Mutation p.V507I 0.41 deleterious(0.03) possibly_damaging(0.84) TCGA-BR-4362-01 19 57133348 57133348 G A ZNF71 Silent p.Q231Q 0.33 TCGA-BR-4362-01 19 580705 580705 A G BSG Missense_Mutation p.M239V 0.09 tolerated(1) benign(0) TCGA-BR-4362-01 19 58117151 58117151 C A ZNF530 Silent p.S86S 0.28 TCGA-BR-4362-01 19 58198191 58198191 G A ZNF551 Missense_Mutation p.C183Y 0.28 tolerated(0.06) benign(0.36) TCGA-BR-4362-01 19 58370966 58370966 G A ZNF587 Missense_Mutation p.V396I 0.25 tolerated(1) benign(0.003) TCGA-BR-4362-01 19 58945384 58945384 C T ZNF132 Missense_Mutation p.R476Q 0.25 tolerated(0.82) possibly_damaging(0.839) TCGA-BR-4362-01 19 6213094 6213094 C T MLLT1 Missense_Mutation p.V547M 0.22 deleterious(0) possibly_damaging(0.623) TCGA-BR-4362-01 19 6380419 6380419 T - GTF2F1 Frame_Shift_Del p.K476Sfs*9 0.22 TCGA-BR-4362-01 19 7754113 7754113 C T FCER2 Missense_Mutation p.R311H 0.34 tolerated_low_confidence(0.21) benign(0.12) TCGA-BR-4362-01 19 7914211 7914211 A G EVI5L Missense_Mutation p.M208V 0.21 deleterious(0) possibly_damaging(0.591) TCGA-BR-4362-01 19 7986931 7986931 C T SNAPC2 Silent p.I128I 0.27 TCGA-BR-4362-01 19 814902 814902 C T LPPR3 Missense_Mutation p.A195T 0.20 deleterious(0.02) probably_damaging(0.988) TCGA-BR-4362-01 19 8190851 8190851 C T FBN3 Missense_Mutation p.V886I 0.21 tolerated(0.2) benign(0.003) TCGA-BR-4362-01 19 8321559 8321559 C T CERS4 Silent p.L193L 0.23 TCGA-BR-4362-01 19 8613002 8613002 T - MYO1F Frame_Shift_Del p.N396Mfs*24 0.28 TCGA-BR-4362-01 19 8808899 8808899 C T ACTL9 Silent p.V51V 0.16 TCGA-BR-4362-01 19 9046249 9046249 T G MUC16 Missense_Mutation p.Q11794H 0.29 possibly_damaging(0.593) TCGA-BR-4362-01 19 9049228 9049228 C T MUC16 Silent p.A10801A 0.29 TCGA-BR-4362-01 19 9324694 9324694 C T OR7D4 Missense_Mutation p.A274T 0.29 tolerated(0.07) benign(0.089) TCGA-BR-4362-01 19 9453697 9453697 T G ZNF559 Missense_Mutation p.C524G 0.06 deleterious(0) benign(0.047) TCGA-BR-4362-01 1 100357205 100357205 T C AGL Missense_Mutation p.I998T 0.04 deleterious(0) possibly_damaging(0.461) TCGA-BR-4362-01 1 103573739 103573739 G A COL11A1 5'UTR 0.24 TCGA-BR-4362-01 1 107691131 107691131 G A NTNG1 5'UTR 0.19 TCGA-BR-4362-01 1 109778671 109778671 G A SARS Missense_Mutation p.A348T 0.25 deleterious(0) probably_damaging(0.99) TCGA-BR-4362-01 1 109910092 109910092 G T SORT1 Silent p.V126V 0.25 TCGA-BR-4362-01 1 110280341 110280341 T C GSTM3 Silent p.L135L 0.09 TCGA-BR-4362-01 1 110765914 110765914 C T KCNC4 Missense_Mutation p.S336F 0.16 deleterious(0.02) probably_damaging(0.989) TCGA-BR-4362-01 1 110766270 110766270 C T KCNC4 Silent p.L455L 0.31 TCGA-BR-4362-01 1 111147188 111147188 G A KCNA2 Nonsense_Mutation p.R73* 0.31 TCGA-BR-4362-01 1 111858017 111858017 G A CHIA Missense_Mutation p.S147N 0.05 deleterious(0.01) possibly_damaging(0.488) TCGA-BR-4362-01 1 112303972 112303972 A - DDX20 Intron 0.26 TCGA-BR-4362-01 1 11300580 11300580 G A MTOR Silent p.Y522Y 0.22 TCGA-BR-4362-01 1 113051996 113051996 C T WNT2B Missense_Mutation p.R38C 0.17 deleterious(0.01) possibly_damaging(0.689) TCGA-BR-4362-01 1 113653186 113653186 T C LRIG2 Splice_Site p.X600_splice 0.16 TCGA-BR-4362-01 1 114380688 114380688 G C PTPN22 Missense_Mutation p.T445R 0.26 deleterious(0.01) benign(0.361) TCGA-BR-4362-01 1 116946596 116946596 C T ATP1A1 Silent p.G1014G 0.20 TCGA-BR-4362-01 1 117484558 117484558 G A PTGFRN Missense_Mutation p.E91K 0.29 tolerated(0.1) possibly_damaging(0.574) TCGA-BR-4362-01 1 118455209 118455209 C T GDAP2 Missense_Mutation p.R138H 0.33 tolerated(0.09) probably_damaging(0.999) TCGA-BR-4362-01 1 119575812 119575812 G A WARS2 Missense_Mutation p.R269C 0.32 deleterious(0) probably_damaging(1) TCGA-BR-4362-01 1 12251952 12251952 C T TNFRSF1B Silent p.C143C 0.21 TCGA-BR-4362-01 1 12262065 12262065 C T TNFRSF1B Silent p.P314P 0.19 TCGA-BR-4362-01 1 12416561 12416561 T C VPS13D Silent p.A3326A 0.31 TCGA-BR-4362-01 1 1250901 1250901 G A CPSF3L Missense_Mutation p.T182M 0.08 deleterious(0) probably_damaging(0.994) TCGA-BR-4362-01 1 1269811 1269811 C T TAS1R3 Silent p.D842D 0.40 TCGA-BR-4362-01 1 12907413 12907413 C A HNRNPCL1 Missense_Mutation p.A244S 0.21 tolerated(0.12) benign(0.215) TCGA-BR-4362-01 1 13036638 13036638 G A PRAMEF22 Missense_Mutation p.R237H 0.16 tolerated(0.2) benign(0.008) TCGA-BR-4362-01 1 144918931 144918931 G A PDE4DIP Missense_Mutation p.R419C 0.02 tolerated(0.28) benign(0.003) TCGA-BR-4362-01 1 145696689 145696689 C T CD160 Intron 0.17 TCGA-BR-4362-01 1 147084979 147084979 C T BCL9 Silent p.N117N 0.31 TCGA-BR-4362-01 1 147086415 147086415 A G BCL9 Missense_Mutation p.K187R 0.14 tolerated(0.38) benign(0.002) TCGA-BR-4362-01 1 151076042 151076042 C - GABPB2 Frame_Shift_Del p.H211Mfs*42 0.32 TCGA-BR-4362-01 1 151134433 151134433 T - LYSMD1 Frame_Shift_Del p.V109Yfs*68 0.25 TCGA-BR-4362-01 1 151263312 151263312 A G ZNF687 Missense_Mutation p.Y1114C 0.06 tolerated(0.21) benign(0.001) TCGA-BR-4362-01 1 152192330 152192330 C T HRNR Missense_Mutation p.G592E 0.15 unknown(0) TCGA-BR-4362-01 1 152283080 152283080 G A FLG Missense_Mutation p.R1428C 0.28 possibly_damaging(0.689) TCGA-BR-4362-01 1 152328128 152328128 T C FLG2 Missense_Mutation p.S712G 0.16 unknown(0) TCGA-BR-4362-01 1 152329376 152329376 T G FLG2 Missense_Mutation p.S296R 0.18 unknown(0) TCGA-BR-4362-01 1 152759779 152759779 T G LCE1E Missense_Mutation p.S2A 0.23 deleterious_low_confidence(0) unknown(0) TCGA-BR-4362-01 1 153617558 153617558 G A CHTOP Missense_Mutation p.R187Q 0.21 tolerated(0.35) unknown(0) TCGA-BR-4362-01 1 153914361 153914361 G A DENND4B Missense_Mutation p.R347C 0.25 tolerated(0.08) possibly_damaging(0.616) TCGA-BR-4362-01 1 153920984 153920984 T G CRTC2 Missense_Mutation p.N604T 0.30 tolerated(0.12) benign(0.028) TCGA-BR-4362-01 1 154179863 154179863 G A C1orf43 3'UTR 0.31 TCGA-BR-4362-01 1 154294498 154294498 C T AQP10 Silent p.A65A 0.24 TCGA-BR-4362-01 1 154562368 154562368 C T ADAR Missense_Mutation p.A845T 0.08 deleterious(0) probably_damaging(0.998) TCGA-BR-4362-01 1 154987252 154987252 G A ZBTB7B Missense_Mutation p.R73Q 0.24 deleterious(0.04) benign(0.365) TCGA-BR-4362-01 1 154998843 154998843 A T DCST2 Missense_Mutation p.F516I 0.07 deleterious(0.04) possibly_damaging(0.486) TCGA-BR-4362-01 1 155152138 155152138 G A TRIM46 Missense_Mutation p.R439H 0.23 deleterious(0.03) benign(0.023) TCGA-BR-4362-01 1 155300265 155300265 T C RUSC1 Missense_Mutation p.L871P 0.24 deleterious(0) probably_damaging(0.997) TCGA-BR-4362-01 1 155707980 155707980 T C DAP3 Missense_Mutation p.F382L 0.22 tolerated(0.06) possibly_damaging(0.836) TCGA-BR-4362-01 1 155896943 155896943 G A KIAA0907 Missense_Mutation p.R157C 0.31 deleterious(0) probably_damaging(0.997) TCGA-BR-4362-01 1 156028210 156028210 G - LAMTOR2 3'UTR 0.27 TCGA-BR-4362-01 1 156046519 156046519 A G MEX3A Missense_Mutation p.M470T 0.16 deleterious(0.02) possibly_damaging(0.899) TCGA-BR-4362-01 1 156220714 156220714 C A SMG5 Missense_Mutation p.G968C 0.08 tolerated(0.06) probably_damaging(1) TCGA-BR-4362-01 1 156562003 156562003 T G APOA1BP Splice_Site p.X97_splice 0.08 TCGA-BR-4362-01 1 156713116 156713118 AGT - HDGF 3'Flank 0.37 TCGA-BR-4362-01 1 158576757 158576757 T - OR10Z1 Frame_Shift_Del p.C179Vfs*7 0.29 TCGA-BR-4362-01 1 159033322 159033322 T - AIM2 Frame_Shift_Del p.N320Mfs*7 0.25 TCGA-BR-4362-01 1 159176246 159176246 T G DARC 3'UTR 0.28 TCGA-BR-4362-01 1 159277558 159277558 C T FCER1A Silent p.L204L 0.29 TCGA-BR-4362-01 1 160000905 160000905 A G PIGM Missense_Mutation p.Y209H 0.04 tolerated(0.54) benign(0.001) TCGA-BR-4362-01 1 160012141 160012141 T C KCNJ10 Missense_Mutation p.D61G 0.24 deleterious(0) benign(0.4) TCGA-BR-4362-01 1 160098475 160098475 C T ATP1A2 Missense_Mutation p.R351W 0.32 deleterious(0.01) possibly_damaging(0.687) TCGA-BR-4362-01 1 160326990 160326990 C T NCSTN Missense_Mutation p.R652C 0.24 deleterious(0) probably_damaging(0.985) TCGA-BR-4362-01 1 16255783 16255783 A - SPEN Frame_Shift_Del p.K1018Sfs*13 0.24 TCGA-BR-4362-01 1 16256980 16256980 A G SPEN Silent p.L1415L 0.07 TCGA-BR-4362-01 1 16377465 16377465 C - CLCNKB Frame_Shift_Del p.Q385Sfs*24 0.29 TCGA-BR-4362-01 1 16380237 16380237 G A CLCNKB Missense_Mutation p.V576M 0.28 tolerated(0.28) benign(0.007) TCGA-BR-4362-01 1 16462199 16462199 G - EPHA2 Frame_Shift_Del p.P460Rfs*33 0.31 TCGA-BR-4362-01 1 16560163 16560163 G A RSG1 Missense_Mutation p.A70V 0.29 deleterious(0) probably_damaging(0.951) TCGA-BR-4362-01 1 167023552 167023552 G A GPA33 3'UTR 0.32 TCGA-BR-4362-01 1 167408619 167408619 C T CD247 Missense_Mutation p.A61T 0.24 tolerated(0.55) benign(0.002) TCGA-BR-4362-01 1 167741719 167741720 - A MPZL1 Frame_Shift_Ins p.E158Rfs*35 0.25 TCGA-BR-4362-01 1 178490260 178490260 T C TEX35 Intron 0.18 TCGA-BR-4362-01 1 183534900 183534900 C T NCF2 Silent p.P313P 0.05 TCGA-BR-4362-01 1 183881395 183881395 A - RGL1 Frame_Shift_Del p.K618Sfs*25 0.27 TCGA-BR-4362-01 1 185931759 185931759 C T HMCN1 Silent p.T646T 0.31 TCGA-BR-4362-01 1 186147727 186147727 T C HMCN1 Missense_Mutation p.F5375L 0.03 possibly_damaging(0.775) TCGA-BR-4362-01 1 186158785 186158785 A G HMCN1 Silent p.G5561G 0.22 TCGA-BR-4362-01 1 192316502 192316502 C T RGS21 Missense_Mutation p.T24M 0.19 deleterious(0.03) probably_damaging(0.93) TCGA-BR-4362-01 1 192335194 192335195 - A RGS21 Frame_Shift_Ins p.L136Tfs*4 0.20 TCGA-BR-4362-01 1 192780194 192780194 A - RGS2 Frame_Shift_Del p.T122Pfs*19 0.24 TCGA-BR-4362-01 1 193038154 193038154 T - TROVE2 Intron 0.18 TCGA-BR-4362-01 1 19473420 19473420 C A UBR4 Missense_Mutation p.E2568D 0.21 benign(0.004) TCGA-BR-4362-01 1 19610544 19610544 G A AKR7A3 Silent p.A260A 0.19 TCGA-BR-4362-01 1 19665926 19665926 C T CAPZB 3'UTR 0.23 TCGA-BR-4362-01 1 196762466 196762466 A G CFHR3 Silent p.E272E 0.56 TCGA-BR-4362-01 1 197390150 197390150 G A CRB1 Missense_Mutation p.V398I 0.26 tolerated(1) benign(0.002) TCGA-BR-4362-01 1 200946499 200946499 G A KIF21B Missense_Mutation p.S1389L 0.26 deleterious(0) probably_damaging(0.986) TCGA-BR-4362-01 1 20097887 20097887 C T TMCO4 Missense_Mutation p.G90S 0.14 deleterious(0.02) probably_damaging(0.999) TCGA-BR-4362-01 1 201282591 201282591 C T PKP1 Missense_Mutation p.R202C 0.40 deleterious(0.01) benign(0.006) TCGA-BR-4362-01 1 201781716 201781716 C T NAV1 Silent p.L1716L 0.27 TCGA-BR-4362-01 1 201958135 201958135 C T RNPEP Missense_Mutation p.T184M 0.22 deleterious(0) probably_damaging(0.998) TCGA-BR-4362-01 1 202992114 202992114 C T TMEM183A Silent p.S359S 0.21 TCGA-BR-4362-01 1 203054894 203054894 G A MYOG Silent p.L66L 0.22 TCGA-BR-4362-01 1 204924033 204924033 C - NFASC Frame_Shift_Del p.P165Rfs*12 0.24 TCGA-BR-4362-01 1 205119814 205119814 A G DSTYK Missense_Mutation p.F821L 0.25 tolerated(0.23) benign(0.405) TCGA-BR-4362-01 1 206328829 206328829 A G CTSE Missense_Mutation p.N299S 0.20 tolerated(0.16) benign(0) TCGA-BR-4362-01 1 208205091 208205091 T G PLXNA2 Missense_Mutation p.K1690T 0.28 deleterious(0) probably_damaging(0.988) TCGA-BR-4362-01 1 208269412 208269412 G A PLXNA2 Silent p.S648S 0.25 TCGA-BR-4362-01 1 20971112 20971112 C T PINK1 Silent p.R302R 0.24 TCGA-BR-4362-01 1 21031369 21031369 G A KIF17 Missense_Mutation p.R232W 0.33 deleterious(0) probably_damaging(0.987) TCGA-BR-4362-01 1 210686512 210686512 A G HHAT Silent p.G342G 0.24 TCGA-BR-4362-01 1 211486764 211486764 A G RCOR3 Splice_Site p.X440_splice 0.08 TCGA-BR-4362-01 1 213277903 213277903 T - RPS6KC1 Frame_Shift_Del p.F125Sfs*5 0.25 TCGA-BR-4362-01 1 214531221 214531221 C T PTPN14 3'UTR 0.17 TCGA-BR-4362-01 1 214557016 214557016 G A PTPN14 Missense_Mutation p.R728W 0.26 deleterious(0.01) benign(0.28) TCGA-BR-4362-01 1 214575076 214575076 A G PTPN14 Silent p.N207N 0.25 TCGA-BR-4362-01 1 215747170 215747171 - T KCTD3 Frame_Shift_Ins p.S45Ffs*14 0.27 TCGA-BR-4362-01 1 216465672 216465672 C T USH2A Missense_Mutation p.R562H 0.25 benign(0.179) TCGA-BR-4362-01 1 21936094 21936094 G - RAP1GAP Frame_Shift_Del p.L413Sfs*18 0.27 TCGA-BR-4362-01 1 219366532 219366532 G A LYPLAL1 Silent p.V100V 0.32 TCGA-BR-4362-01 1 220279373 220279373 G A IARS2 Missense_Mutation p.G403S 0.30 tolerated(1) benign(0.006) TCGA-BR-4362-01 1 220324483 220324483 A - RAB3GAP2 3'UTR 0.57 TCGA-BR-4362-01 1 220364615 220364615 C T RAB3GAP2 Missense_Mutation p.A428T 0.27 deleterious(0) probably_damaging(1) TCGA-BR-4362-01 1 221057685 221057685 G A HLX Missense_Mutation p.R369H 0.27 tolerated(0.05) possibly_damaging(0.781) TCGA-BR-4362-01 1 22191363 22191363 C T HSPG2 Silent p.P1533P 0.18 TCGA-BR-4362-01 1 223567946 223567946 C T C1orf65 Missense_Mutation p.R377W 0.23 deleterious(0) possibly_damaging(0.731) TCGA-BR-4362-01 1 226037670 226037670 A G TMEM63A Silent p.L672L 0.06 TCGA-BR-4362-01 1 226053597 226053597 C T TMEM63A Missense_Mutation p.R249Q 0.32 tolerated(0.25) benign(0.005) TCGA-BR-4362-01 1 228285737 228285737 T A ARF1 3'UTR 0.27 TCGA-BR-4362-01 1 228401921 228401921 C T OBSCN Silent p.G435G 0.20 TCGA-BR-4362-01 1 229653865 229653865 T - ABCB10 3'UTR 0.21 TCGA-BR-4362-01 1 229737984 229737984 G A TAF5L Silent p.D310D 0.19 TCGA-BR-4362-01 1 230846080 230846080 A G AGT Missense_Mutation p.S173P 0.05 deleterious(0) probably_damaging(0.991) TCGA-BR-4362-01 1 231362513 231362513 T - C1orf131 Frame_Shift_Del p.K222Rfs*55 0.27 TCGA-BR-4362-01 1 235909731 235909731 A G LYST Missense_Mutation p.M2626T 0.23 deleterious(0.05) benign(0.068) TCGA-BR-4362-01 1 236384137 236384137 A - ERO1LB Frame_Shift_Del p.F446Lfs*8 0.22 TCGA-BR-4362-01 1 236730088 236730088 T C HEATR1 Missense_Mutation p.H1389R 0.18 deleterious(0) probably_damaging(0.954) TCGA-BR-4362-01 1 236906269 236906269 G A ACTN2 Missense_Mutation p.R394Q 0.26 tolerated(0.29) benign(0.005) TCGA-BR-4362-01 1 237947929 237947929 T C RYR2 Missense_Mutation p.F4306S 0.20 benign(0.003) TCGA-BR-4362-01 1 240656299 240656299 G A GREM2 Silent p.S159S 0.31 TCGA-BR-4362-01 1 24078022 24078024 GAA - TCEB3 In_Frame_Del p.K338del 0.22 TCGA-BR-4362-01 1 2411332 2411332 G A PLCH2 Missense_Mutation p.R117H 0.30 deleterious(0) probably_damaging(1) TCGA-BR-4362-01 1 241680541 241680541 C T FH Missense_Mutation p.A70T 0.26 deleterious(0) probably_damaging(0.989) TCGA-BR-4362-01 1 242253062 242253062 A - PLD5 3'UTR 0.18 TCGA-BR-4362-01 1 247200746 247200747 - T ZNF670 3'UTR 0.19 TCGA-BR-4362-01 1 247319909 247319909 T - ZNF124 Frame_Shift_Del p.T277Lfs*31 0.21 TCGA-BR-4362-01 1 248550915 248550915 T C OR2T6 Silent p.N2N 0.26 TCGA-BR-4362-01 1 248569514 248569514 C T OR2T1 Silent p.T73T 0.30 TCGA-BR-4362-01 1 24995729 24995729 C - SRRM1 Frame_Shift_Del p.P620Lfs*114 0.31 TCGA-BR-4362-01 1 25775374 25775375 - T TMEM57 Frame_Shift_Ins p.A103Cfs*3 0.28 TCGA-BR-4362-01 1 26449151 26449151 A - PDIK1L 3'UTR 0.17 TCGA-BR-4362-01 1 26515141 26515141 C T CNKSR1 Missense_Mutation p.A548V 0.29 deleterious(0.03) benign(0.017) TCGA-BR-4362-01 1 26691467 26691467 G A ZNF683 Silent p.H190H 0.25 TCGA-BR-4362-01 1 26900923 26900923 T - RPS6KA1 3'Flank 0.44 TCGA-BR-4362-01 1 27099053 27099053 G T ARID1A Nonsense_Mutation p.G1157* 0.26 TCGA-BR-4362-01 1 27105617 27105617 C T ARID1A Missense_Mutation p.T1743M 0.25 possibly_damaging(0.77) TCGA-BR-4362-01 1 27621108 27621109 GG - WDTC1 Frame_Shift_Del p.E290Tfs*6 0.29 TCGA-BR-4362-01 1 27660540 27660540 C T TMEM222 Missense_Mutation p.R135C 0.20 deleterious(0) probably_damaging(0.982) TCGA-BR-4362-01 1 28793193 28793193 C - PHACTR4 Frame_Shift_Del p.P257Qfs*35 0.09 TCGA-BR-4362-01 1 29095518 29095518 A - YTHDF2 3'UTR 0.22 TCGA-BR-4362-01 1 29485950 29485950 G C SRSF4 Missense_Mutation p.T100S 0.28 tolerated(0.06) benign(0.035) TCGA-BR-4362-01 1 31413995 31413995 T C PUM1 Intron 0.19 TCGA-BR-4362-01 1 32157657 32157657 G A COL16A1 Silent p.G402G 0.21 TCGA-BR-4362-01 1 32263883 32263883 G A SPOCD1 Silent p.Y690Y 0.26 TCGA-BR-4362-01 1 32801580 32801580 C T MARCKSL1 Missense_Mutation p.A19T 0.27 tolerated(0.14) possibly_damaging(0.787) TCGA-BR-4362-01 1 3347517 3347517 C T PRDM16 Silent p.D1122D 0.33 TCGA-BR-4362-01 1 34663085 34663085 A G C1orf94 Missense_Mutation p.I194V 0.27 tolerated(0.34) benign(0.009) TCGA-BR-4362-01 1 35321092 35321092 C T SMIM12 3'UTR 0.16 TCGA-BR-4362-01 1 36031043 36031043 G A NCDN Missense_Mutation p.A657T 0.23 tolerated(0.36) benign(0.006) TCGA-BR-4362-01 1 36748267 36748267 C T THRAP3 Nonsense_Mutation p.R35* 0.23 TCGA-BR-4362-01 1 36769580 36769580 C T THRAP3 Nonsense_Mutation p.R944* 0.17 TCGA-BR-4362-01 1 38227422 38227422 G A EPHA10 Missense_Mutation p.R169C 0.44 deleterious(0) probably_damaging(0.998) TCGA-BR-4362-01 1 38304325 38304325 G A MTF1 Nonsense_Mutation p.R251* 0.22 TCGA-BR-4362-01 1 41007384 41007384 T C ZNF684 Splice_Site p.X80_splice 0.23 TCGA-BR-4362-01 1 43308594 43308594 T C ERMAP Silent p.N373N 0.24 TCGA-BR-4362-01 1 43317175 43317175 G A ZNF691 Silent p.T213T 0.36 TCGA-BR-4362-01 1 43738845 43738845 G A TMEM125 Missense_Mutation p.G151D 0.23 deleterious(0.01) possibly_damaging(0.835) TCGA-BR-4362-01 1 44438134 44438134 G T DPH2 Missense_Mutation p.G465C 0.19 deleterious(0) probably_damaging(1) TCGA-BR-4362-01 1 45205539 45205539 T A KIF2C 5'UTR 0.08 TCGA-BR-4362-01 1 45271717 45271717 C T TCTEX1D4 Silent p.S208S 0.21 TCGA-BR-4362-01 1 46972783 46972783 C - DMBX1 Frame_Shift_Del p.D36Tfs*59 0.13 TCGA-BR-4362-01 1 47040609 47040609 C T MKNK1 Intron 0.24 TCGA-BR-4362-01 1 47144226 47144226 A G EFCAB14 Silent p.S465S 0.35 TCGA-BR-4362-01 1 48764299 48764299 A - SPATA6 3'UTR 0.22 TCGA-BR-4362-01 1 52492989 52492989 T A TXNDC12 Missense_Mutation p.E81D 0.24 tolerated(0.15) benign(0.036) TCGA-BR-4362-01 1 52840492 52840492 G A ORC1 Missense_Mutation p.T794M 0.18 deleterious(0) probably_damaging(0.995) TCGA-BR-4362-01 1 52991403 52991403 T - ZCCHC11 Frame_Shift_Del p.I184Ffs*11 0.25 TCGA-BR-4362-01 1 53543377 53543377 C - PODN Frame_Shift_Del p.P303Rfs*7 0.25 TCGA-BR-4362-01 1 55081757 55081757 G - FAM151A Frame_Shift_Del p.T118Lfs*43 0.44 TCGA-BR-4362-01 1 6215763 6215763 C T CHD5 Silent p.S134S 0.15 TCGA-BR-4362-01 1 6246790 6246790 T C RPL22 Missense_Mutation p.Y110C 0.28 deleterious(0.01) possibly_damaging(0.698) TCGA-BR-4362-01 1 62516732 62516732 T C INADL Splice_Site p.X1375_splice 0.21 TCGA-BR-4362-01 1 6257785 6257785 T - RPL22 Frame_Shift_Del p.K15Rfs*5 0.31 TCGA-BR-4362-01 1 62740559 62740559 A C KANK4 Missense_Mutation p.F73V 0.25 deleterious(0) benign(0.394) TCGA-BR-4362-01 1 6698426 6698426 T C DNAJC11 Splice_Site p.X418_splice 0.10 TCGA-BR-4362-01 1 68171151 68171151 T - GNG12 Frame_Shift_Del p.T68Lfs*22 0.22 TCGA-BR-4362-01 1 72748049 72748049 C T NEGR1 Silent p.A43A 0.24 TCGA-BR-4362-01 1 75602834 75602834 C T LHX8 Missense_Mutation p.P52L 0.24 tolerated(0.2) benign(0.209) TCGA-BR-4362-01 1 7797375 7797375 C T CAMTA1 Missense_Mutation p.R1135W 0.27 deleterious(0) probably_damaging(0.997) TCGA-BR-4362-01 1 78097900 78097900 G T ZZZ3 Silent p.T380T 0.23 TCGA-BR-4362-01 1 78511969 78511971 AGG - GIPC2 In_Frame_Del p.E65del 0.24 TCGA-BR-4362-01 1 79107666 79107666 A C IFI44L 3'UTR 0.18 TCGA-BR-4362-01 1 79121150 79121150 A C IFI44 Missense_Mutation p.D265A 0.06 deleterious(0.02) possibly_damaging(0.816) TCGA-BR-4362-01 1 8420009 8420010 CA - RERE Frame_Shift_Del p.A1145Pfs*23 0.24 TCGA-BR-4362-01 1 85036346 85036346 T C CTBS Missense_Mutation p.T79A 0.07 deleterious(0) probably_damaging(0.991) TCGA-BR-4362-01 1 85666191 85666191 C T SYDE2 Silent p.G163G 0.30 TCGA-BR-4362-01 1 86826142 86826142 T - ODF2L Frame_Shift_Del p.K407Nfs*22 0.27 TCGA-BR-4362-01 1 86965639 86965639 A G CLCA1 Missense_Mutation p.N886D 0.25 tolerated(1) benign(0) TCGA-BR-4362-01 1 87025666 87025666 T - CLCA4 Frame_Shift_Del p.F73Sfs*7 0.20 TCGA-BR-4362-01 1 87031502 87031502 C T CLCA4 Silent p.N251N 0.06 TCGA-BR-4362-01 1 889451 889451 G A NOC2L Missense_Mutation p.P237L 0.26 deleterious(0.05) benign(0.081) TCGA-BR-4362-01 1 90048567 90048567 T - LRRC8B Frame_Shift_Del p.F121Sfs*58 0.26 TCGA-BR-4362-01 1 90400499 90400499 A G LRRC8D Silent p.K624K 0.05 TCGA-BR-4362-01 1 91781979 91781980 - T HFM1 Frame_Shift_Ins p.I956Nfs*10 0.22 TCGA-BR-4362-01 1 93169000 93169000 A - EVI5 Frame_Shift_Del p.F216Lfs*15 0.12 TCGA-BR-4362-01 1 9778917 9778917 G A PIK3CD Missense_Mutation p.A396T 0.21 tolerated(0.09) possibly_damaging(0.507) TCGA-BR-4362-01 1 98165040 98165040 A G DPYD Missense_Mutation p.S183P 0.27 tolerated(1) benign(0) TCGA-BR-4362-01 20 13610646 13610646 G T TASP1 Missense_Mutation p.A27D 0.25 deleterious_low_confidence(0.04) benign(0.063) TCGA-BR-4362-01 20 1961052 1961052 C T PDYN Missense_Mutation p.G228S 0.30 deleterious(0) probably_damaging(1) TCGA-BR-4362-01 20 20177224 20177224 A G C20orf26 Missense_Mutation p.Y534C 0.11 deleterious(0) probably_damaging(0.994) TCGA-BR-4362-01 20 23065849 23065849 C T CD93 Silent p.T327T 0.38 TCGA-BR-4362-01 20 23066467 23066467 C A CD93 Missense_Mutation p.E121D 0.36 tolerated(0.07) benign(0.132) TCGA-BR-4362-01 20 23472228 23472228 G A CST8 5'UTR 0.24 TCGA-BR-4362-01 20 2637325 2637326 CT - NOP56 Intron 0.30 TCGA-BR-4362-01 20 2775270 2775271 - A CPXM1 Frame_Shift_Ins p.A626Cfs*15 0.27 TCGA-BR-4362-01 20 30818680 30818680 C T POFUT1 Missense_Mutation p.P265L 0.28 deleterious(0.02) benign(0.192) TCGA-BR-4362-01 20 32232389 32232389 G A CBFA2T2 Silent p.S584S 0.30 TCGA-BR-4362-01 20 32684518 32684518 C T EIF2S2 Missense_Mutation p.V210I 0.32 tolerated(0.07) possibly_damaging(0.513) TCGA-BR-4362-01 20 33568493 33568494 AT - MYH7B Frame_Shift_Del p.Y196Cfs*29 0.09 TCGA-BR-4362-01 20 34092703 34092703 G A CEP250 Nonsense_Mutation p.W2169* 0.30 TCGA-BR-4362-01 20 34827741 34827741 A C AAR2 Splice_Site 0.16 TCGA-BR-4362-01 20 36488350 36488350 T A CTNNBL1 Missense_Mutation p.F481Y 0.17 tolerated(0.69) benign(0.01) TCGA-BR-4362-01 20 3729932 3729932 G T HSPA12B Missense_Mutation p.G302C 0.23 tolerated(0.19) probably_damaging(0.951) TCGA-BR-4362-01 20 39800838 39800838 T C PLCG1 Silent p.T938T 0.26 TCGA-BR-4362-01 20 40049262 40049262 C G CHD6 Missense_Mutation p.E2005Q 0.21 deleterious_low_confidence(0.01) benign(0.147) TCGA-BR-4362-01 20 40102043 40102043 C T CHD6 Silent p.A861A 0.33 TCGA-BR-4362-01 20 42979427 42979427 T C R3HDML Missense_Mutation p.F253L 0.04 tolerated(0.11) benign(0.02) TCGA-BR-4362-01 20 44313348 44313348 G T WFDC10B 3'UTR 0.39 TCGA-BR-4362-01 20 44695753 44695753 T C NCOA5 Silent p.R190R 0.04 TCGA-BR-4362-01 20 45875225 45875225 A G ZMYND8 Missense_Mutation p.V604A 0.21 deleterious_low_confidence(0.02) benign(0.283) TCGA-BR-4362-01 20 47734382 47734382 C T STAU1 Missense_Mutation p.V481I 0.23 tolerated(0.36) benign(0.002) TCGA-BR-4362-01 20 48256306 48256306 T G B4GALT5 Missense_Mutation p.S276R 0.05 deleterious(0) probably_damaging(0.996) TCGA-BR-4362-01 20 50255941 50255941 T C ATP9A Missense_Mutation p.T537A 0.07 tolerated(0.29) benign(0.005) TCGA-BR-4362-01 20 51870150 51870150 C T TSHZ2 Silent p.D51D 0.30 TCGA-BR-4362-01 20 52645335 52645335 T C BCAS1 Missense_Mutation p.T107A 0.27 tolerated(0.19) benign(0.027) TCGA-BR-4362-01 20 57036091 57036091 G - APCDD1L Frame_Shift_Del p.L421Sfs*63 0.28 TCGA-BR-4362-01 20 57766920 57766920 T A ZNF831 Silent p.S282S 0.17 TCGA-BR-4362-01 20 58349364 58349364 C T PHACTR3 Silent p.S331S 0.28 TCGA-BR-4362-01 20 58467047 58467049 TTT - SYCP2 In_Frame_Del p.K787del 0.36 TCGA-BR-4362-01 20 60718850 60718850 C T SS18L1 5'Flank 0.25 TCGA-BR-4362-01 20 61297757 61297757 T C SLCO4A1 Silent p.G434G 0.07 TCGA-BR-4362-01 20 61488984 61488984 G A TCFL5 Missense_Mutation p.A334V 0.25 tolerated(0.08) benign(0.041) TCGA-BR-4362-01 20 62070977 62070977 C T KCNQ2 Missense_Mutation p.G301S 0.05 deleterious(0) probably_damaging(0.986) TCGA-BR-4362-01 20 62321432 62321432 C - RTEL1 Intron 0.33 TCGA-BR-4362-01 20 62333552 62333552 G A ARFRP1 Silent p.H94H 0.29 TCGA-BR-4362-01 21 16338330 16338330 T - NRIP1 Frame_Shift_Del p.E729Rfs*5 0.25 TCGA-BR-4362-01 21 18933045 18933045 A - CXADR Frame_Shift_Del p.N201Mfs*27 0.16 TCGA-BR-4362-01 21 27425630 27425630 A C APP Silent p.P130P 0.11 TCGA-BR-4362-01 21 27938629 27938629 C T CYYR1 Silent p.T44T 0.22 TCGA-BR-4362-01 21 28296636 28296636 T A ADAMTS5 Missense_Mutation p.L843F 0.05 tolerated(0.06) probably_damaging(0.954) TCGA-BR-4362-01 21 30365199 30365199 G A LTN1 Silent p.A22A 0.30 TCGA-BR-4362-01 21 31913970 31913970 A G KRTAP19-6 3'UTR 0.20 TCGA-BR-4362-01 21 32639181 32639181 C T TIAM1 Silent p.T36T 0.26 TCGA-BR-4362-01 21 34113929 34113929 A G PAXBP1 Intron 0.38 TCGA-BR-4362-01 21 34924556 34924556 C T SON Missense_Mutation p.R1007C 0.27 possibly_damaging(0.689) TCGA-BR-4362-01 21 38380463 38380463 G A RIPPLY3 Silent p.A37A 0.21 TCGA-BR-4362-01 21 40720231 40720231 T - HMGN1 Frame_Shift_Del p.K38Rfs*168 0.20 TCGA-BR-4362-01 21 40794907 40794907 T - LCA5L Frame_Shift_Del p.I278Yfs*8 0.32 TCGA-BR-4362-01 21 43412127 43412127 G A ZBTB21 Missense_Mutation p.P693L 0.27 deleterious(0.02) probably_damaging(0.992) TCGA-BR-4362-01 21 45107681 45107681 C T RRP1B Missense_Mutation p.R476W 0.27 deleterious(0) probably_damaging(0.993) TCGA-BR-4362-01 21 46086510 46086510 G - KRTAP12-2 Frame_Shift_Del p.S99Pfs*10 0.28 TCGA-BR-4362-01 21 46907379 46907379 G A COL18A1 Missense_Mutation p.G798R 0.18 probably_damaging(1) TCGA-BR-4362-01 21 47545909 47545909 C T COL6A2 Missense_Mutation p.A727V 0.31 tolerated(0.48) possibly_damaging(0.771) TCGA-BR-4362-01 21 47626623 47626623 C - LSS Frame_Shift_Del p.H510Tfs*6 0.26 TCGA-BR-4362-01 21 47633708 47633708 G A LSS Silent p.D351D 0.14 TCGA-BR-4362-01 21 47986480 47986480 C T DIP2A Silent p.H1449H 0.18 TCGA-BR-4362-01 22 16256539 16256539 T C POTEH 3'UTR 0.05 TCGA-BR-4362-01 22 18844920 18844920 C T BCRP7 RNA 0.10 TCGA-BR-4362-01 22 19241652 19241652 T C CLTCL1 Missense_Mutation p.N117D 0.24 tolerated(0.23) benign(0.018) TCGA-BR-4362-01 22 19905729 19905729 G A TXNRD2 Missense_Mutation p.A129V 0.22 tolerated(1) benign(0.148) TCGA-BR-4362-01 22 20130522 20130522 C - ZDHHC8 Frame_Shift_Del p.T459Rfs*177 0.62 TCGA-BR-4362-01 22 20230039 20230039 C T RTN4R Missense_Mutation p.R206H 0.29 deleterious(0) probably_damaging(0.923) TCGA-BR-4362-01 22 20760268 20760268 C T ZNF74 Silent p.C315C 0.38 TCGA-BR-4362-01 22 21340177 21340177 C G LZTR1 Missense_Mutation p.S104C 0.40 deleterious(0) probably_damaging(0.992) TCGA-BR-4362-01 22 21385698 21385698 C T SLC7A4 Missense_Mutation p.R135H 0.21 deleterious(0.01) probably_damaging(0.989) TCGA-BR-4362-01 22 22869883 22869883 C A ZNF280A Missense_Mutation p.E24D 0.20 tolerated(1) benign(0) TCGA-BR-4362-01 22 23264816 23264816 G T IGLC7 Nonsense_Mutation p.E18* 0.11 TCGA-BR-4362-01 22 23264817 23264817 A T IGLC7 Missense_Mutation p.E18V 0.11 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-BR-4362-01 22 23744255 23744255 A G ZDHHC8P1 Intron 0.31 TCGA-BR-4362-01 22 24581755 24581755 G A SUSD2 Silent p.T399T 0.21 TCGA-BR-4362-01 22 25019835 25019835 C T GGT1 Silent p.Y324Y 0.23 TCGA-BR-4362-01 22 25251295 25251295 T A SGSM1 Missense_Mutation p.D189E 0.19 deleterious(0) probably_damaging(0.987) TCGA-BR-4362-01 22 26736590 26736590 A G SEZ6L Missense_Mutation p.N735S 0.13 tolerated(0.13) benign(0.173) TCGA-BR-4362-01 22 29090021 29090021 T C CHEK2 Missense_Mutation p.Q530R 0.07 tolerated(0.19) possibly_damaging(0.621) TCGA-BR-4362-01 22 29440867 29440867 C T ZNRF3 Nonsense_Mutation p.R245* 0.32 TCGA-BR-4362-01 22 29745219 29745219 G A AP1B1 Silent p.D475D 0.28 TCGA-BR-4362-01 22 29754898 29754898 G A AP1B1 Silent p.R114R 0.46 TCGA-BR-4362-01 22 30408454 30408454 C T MTMR3 Missense_Mutation p.R407W 0.17 deleterious(0) probably_damaging(0.999) TCGA-BR-4362-01 22 31536019 31536019 G A PLA2G3 Silent p.L108L 0.46 TCGA-BR-4362-01 22 31741479 31741479 C T PATZ1 Missense_Mutation p.G37D 0.27 deleterious_low_confidence(0) benign(0.096) TCGA-BR-4362-01 22 32009377 32009377 G T SFI1 Missense_Mutation p.R868M 0.13 deleterious(0) probably_damaging(0.982) TCGA-BR-4362-01 22 32179916 32179916 T C DEPDC5 Silent p.A169A 0.29 TCGA-BR-4362-01 22 32302609 32302610 - T DEPDC5 3'UTR 0.27 TCGA-BR-4362-01 22 32334034 32334034 T C C22orf24 Missense_Mutation p.T7A 0.14 tolerated_low_confidence(0.66) possibly_damaging(0.801) TCGA-BR-4362-01 22 35785929 35785929 C T HMOX1 Missense_Mutation p.R237C 0.31 deleterious(0) possibly_damaging(0.88) TCGA-BR-4362-01 22 36140245 36140245 C T RBFOX2 3'Flank 0.26 TCGA-BR-4362-01 22 36689461 36689461 C T MYH9 Missense_Mutation p.E1337K 0.18 possibly_damaging(0.61) TCGA-BR-4362-01 22 36695071 36695071 T C MYH9 Silent p.E998E 0.04 TCGA-BR-4362-01 22 36714301 36714301 C T MYH9 Missense_Mutation p.R393H 0.25 probably_damaging(0.932) TCGA-BR-4362-01 22 36714302 36714302 G A MYH9 Missense_Mutation p.R393C 0.25 probably_damaging(0.954) TCGA-BR-4362-01 22 37769252 37769252 G A ELFN2 Missense_Mutation p.P775S 0.31 tolerated(0.06) benign(0.17) TCGA-BR-4362-01 22 38228694 38228694 G A ANKRD54 Missense_Mutation p.R260C 0.14 deleterious(0.01) possibly_damaging(0.847) TCGA-BR-4362-01 22 39884545 39884545 G A MGAT3 Missense_Mutation p.R398H 0.33 tolerated(0.08) possibly_damaging(0.671) TCGA-BR-4362-01 22 39909860 39909860 C T MIEF1 Silent p.L308L 0.38 TCGA-BR-4362-01 22 40681767 40681767 C - TNRC6B Frame_Shift_Del p.Q1236Rfs*15 0.29 TCGA-BR-4362-01 22 40756478 40756478 G - ADSL Frame_Shift_Del p.A260Hfs*52 0.17 TCGA-BR-4362-01 22 40804113 40804113 C T SGSM3 Missense_Mutation p.R540C 0.23 deleterious(0) probably_damaging(0.997) TCGA-BR-4362-01 22 40816542 40816542 G - MKL1 Frame_Shift_Del p.P307Qfs*30 0.39 TCGA-BR-4362-01 22 42390663 42390663 T C SEPT3 Missense_Mutation p.I319T 0.08 tolerated(0.07) probably_damaging(0.991) TCGA-BR-4362-01 22 42609770 42609771 - T TCF20 Frame_Shift_Ins p.M515Yfs*31 0.26 TCGA-BR-4362-01 22 44287049 44287050 - G PNPLA5 Frame_Shift_Ins p.D107Rfs*19 0.26 TCGA-BR-4362-01 22 46136420 46136420 T C ATXN10 Splice_Site p.X391_splice 0.04 TCGA-BR-4362-01 22 46611192 46611192 G T PPARA Missense_Mutation p.G111C 0.24 deleterious(0) probably_damaging(1) TCGA-BR-4362-01 22 46655432 46655432 A T PKDREJ Missense_Mutation p.V1263E 0.22 deleterious(0) probably_damaging(0.988) TCGA-BR-4362-01 22 46793716 46793716 G A CELSR1 Silent p.N1852N 0.35 TCGA-BR-4362-01 22 47308004 47308004 G A TBC1D22A Missense_Mutation p.R312H 0.24 deleterious(0) probably_damaging(0.999) TCGA-BR-4362-01 22 50169717 50169717 T C BRD1 Missense_Mutation p.Y940C 0.35 deleterious(0) probably_damaging(0.919) TCGA-BR-4362-01 22 50197979 50197979 A G BRD1 Missense_Mutation p.I466T 0.19 deleterious(0) benign(0.089) TCGA-BR-4362-01 22 50277790 50277790 C T ZBED4 Silent p.H160H 0.31 TCGA-BR-4362-01 22 50470360 50470360 C T TTLL8 Missense_Mutation p.A504T 0.27 tolerated(0.88) benign(0.01) TCGA-BR-4362-01 22 50655450 50655450 C T SELO Nonsense_Mutation p.Q580* 0.38 TCGA-BR-4362-01 22 50714358 50714358 A G PLXNB2 Missense_Mutation p.L1791P 0.09 deleterious(0) probably_damaging(0.998) TCGA-BR-4362-01 22 50717305 50717305 T A PLXNB2 Missense_Mutation p.R1509W 0.09 deleterious(0) probably_damaging(0.928) TCGA-BR-4362-01 22 51183154 51183154 G - ACR Frame_Shift_Del p.V264* 0.35 TCGA-BR-4362-01 2 101591353 101591353 C T NPAS2 Missense_Mutation p.A410V 0.20 tolerated(0.54) benign(0.002) TCGA-BR-4362-01 2 105709992 105709992 A C MRPS9 Missense_Mutation p.K275N 0.08 tolerated(0.38) benign(0.02) TCGA-BR-4362-01 2 10923322 10923322 T C ATP6V1C2 Missense_Mutation p.L406P 0.05 deleterious(0) probably_damaging(0.981) TCGA-BR-4362-01 2 1094066 1094066 G A SNTG2 Missense_Mutation p.V99I 0.30 deleterious(0.01) probably_damaging(0.961) TCGA-BR-4362-01 2 112945229 112945229 C T FBLN7 3'UTR 0.69 TCGA-BR-4362-01 2 113831989 113831989 C T IL1F10 Missense_Mutation p.A39V 0.26 tolerated(0.24) benign(0.418) TCGA-BR-4362-01 2 120012379 120012379 G A STEAP3 Silent p.P390P 0.22 TCGA-BR-4362-01 2 128480887 128480887 T C WDR33 Missense_Mutation p.M411V 0.07 tolerated(0.07) unknown(0) TCGA-BR-4362-01 2 128707456 128707456 G A SAP130 Silent p.D954D 0.24 TCGA-BR-4362-01 2 128707900 128707900 T C SAP130 Silent p.L861L 0.16 TCGA-BR-4362-01 2 132285715 132285715 C T CCDC74A Nonsense_Mutation p.Q58* 0.40 TCGA-BR-4362-01 2 133531439 133531439 T A NCKAP5 Missense_Mutation p.E1693V 0.24 deleterious(0) possibly_damaging(0.659) TCGA-BR-4362-01 2 133542288 133542288 T A NCKAP5 Missense_Mutation p.N699I 0.04 deleterious(0.01) possibly_damaging(0.864) TCGA-BR-4362-01 2 135012020 135012020 T - MGAT5 Frame_Shift_Del p.F17Sfs*3 0.31 TCGA-BR-4362-01 2 136393667 136393667 C T R3HDM1 Missense_Mutation p.R273C 0.29 tolerated(0.11) possibly_damaging(0.679) TCGA-BR-4362-01 2 138378192 138378192 A C THSD7B Missense_Mutation p.K1235T 0.32 deleterious(0.02) unknown(0) TCGA-BR-4362-01 2 145157490 145157490 C T ZEB2 Missense_Mutation p.A422T 0.23 deleterious(0.01) benign(0.04) TCGA-BR-4362-01 2 148683686 148683686 A - ACVR2A Frame_Shift_Del p.K437Rfs*5 0.35 TCGA-BR-4362-01 2 150071412 150071412 A G LYPD6B 3'UTR 0.33 TCGA-BR-4362-01 2 152321162 152321163 - A RIF1 Frame_Shift_Ins p.T1712Nfs*6 0.22 TCGA-BR-4362-01 2 152410392 152410392 C T NEB Missense_Mutation p.D6526N 0.18 probably_damaging(1) TCGA-BR-4362-01 2 157182788 157182788 T A NR4A2 Missense_Mutation p.R472W 0.05 deleterious(0) probably_damaging(0.998) TCGA-BR-4362-01 2 158115241 158115241 T C GALNT5 Missense_Mutation p.L216S 0.13 deleterious_low_confidence(0.01) benign(0.046) TCGA-BR-4362-01 2 158152294 158152294 A G GALNT5 Missense_Mutation p.N621D 0.04 tolerated(0.24) possibly_damaging(0.531) TCGA-BR-4362-01 2 160086950 160086950 C T TANC1 Silent p.S1671S 0.24 TCGA-BR-4362-01 2 160673462 160673462 T - LY75-CD302 Frame_Shift_Del p.K1412Rfs*2 0.20 TCGA-BR-4362-01 2 162719492 162719492 T G SLC4A10 Missense_Mutation p.L229R 0.33 tolerated(0.59) probably_damaging(0.999) TCGA-BR-4362-01 2 1653372 1653372 C T PXDN Missense_Mutation p.R727Q 0.30 deleterious(0.05) probably_damaging(0.928) TCGA-BR-4362-01 2 165984367 165984367 T C SCN3A Missense_Mutation p.E1056G 0.26 tolerated(0.08) benign(0.423) TCGA-BR-4362-01 2 168100923 168100923 A C XIRP2 Missense_Mutation p.E1007D 0.31 probably_damaging(0.999) TCGA-BR-4362-01 2 171806085 171806085 G A GORASP2 Missense_Mutation p.A61T 0.22 deleterious(0.02) benign(0.037) TCGA-BR-4362-01 2 172952935 172952935 T C DLX1 Missense_Mutation p.W240R 0.04 deleterious(0) probably_damaging(0.997) TCGA-BR-4362-01 2 175613330 175613330 T G CHRNA1 Missense_Mutation p.K432T 0.19 deleterious(0.02) probably_damaging(0.998) TCGA-BR-4362-01 2 176957879 176957879 G A HOXD13 Silent p.S87S 0.25 TCGA-BR-4362-01 2 17697058 17697058 T C RAD51AP2 Silent p.S875S 0.13 TCGA-BR-4362-01 2 178415909 178415909 T C TTC30B Missense_Mutation p.E528G 0.26 deleterious(0) probably_damaging(1) TCGA-BR-4362-01 2 178494204 178494204 T - PDE11A Frame_Shift_Del p.K911Nfs*17 0.30 TCGA-BR-4362-01 2 178985972 178985972 C T RBM45 Missense_Mutation p.R247C 0.25 tolerated(0.25) benign(0.029) TCGA-BR-4362-01 2 179396497 179396497 G A TTN Missense_Mutation p.R34949C 0.27 TCGA-BR-4362-01 2 179403902 179403902 C T TTN Silent p.R32920R 0.21 TCGA-BR-4362-01 2 179436451 179436451 A C TTN Missense_Mutation p.V24803G 0.29 TCGA-BR-4362-01 2 179462439 179462439 C T TTN Missense_Mutation p.V19124I 0.25 TCGA-BR-4362-01 2 179484765 179484765 T C TTN Missense_Mutation p.Y15460C 0.25 TCGA-BR-4362-01 2 179485466 179485466 T C TTN Missense_Mutation p.S15291G 0.32 TCGA-BR-4362-01 2 179579969 179579970 - T TTN Frame_Shift_Ins p.P8649Afs*11 0.26 TCGA-BR-4362-01 2 179640650 179640650 T C TTN Missense_Mutation p.R1981G 0.25 TCGA-BR-4362-01 2 183601076 183601076 G C DNAJC10 Missense_Mutation p.G317A 0.24 tolerated(0.13) benign(0.242) TCGA-BR-4362-01 2 190640219 190640219 C A ORMDL1 Intron 0.24 TCGA-BR-4362-01 2 191819482 191819482 T C GLS Silent p.G597G 0.06 TCGA-BR-4362-01 2 197990131 197990131 C T ANKRD44 Missense_Mutation p.R175H 0.24 deleterious(0.03) possibly_damaging(0.542) TCGA-BR-4362-01 2 201438699 201438699 A G SGOL2 Missense_Mutation p.I1210M 0.24 tolerated(0.07) possibly_damaging(0.477) TCGA-BR-4362-01 2 202151290 202151290 A - CASP8 Frame_Shift_Del p.K532Nfs*73 0.22 TCGA-BR-4362-01 2 203420130 203420130 A - BMPR2 Frame_Shift_Del p.N583Tfs*44 0.26 TCGA-BR-4362-01 2 204037548 204037549 - A NBEAL1 Frame_Shift_Ins p.N2072Kfs*10 0.30 TCGA-BR-4362-01 2 206592625 206592625 G A NRP2 Missense_Mutation p.R334H 0.17 tolerated(0.47) benign(0.02) TCGA-BR-4362-01 2 209049730 209049730 C T C2orf80 Missense_Mutation p.R23Q 0.33 tolerated(0.05) benign(0.063) TCGA-BR-4362-01 2 209169732 209169732 A - PIKFYVE Frame_Shift_Del p.E546Sfs*3 0.29 TCGA-BR-4362-01 2 211336712 211336712 C T LANCL1 Missense_Mutation p.R57Q 0.28 tolerated(0.25) benign(0.006) TCGA-BR-4362-01 2 215275173 215275173 A G SPAG16 3'UTR 0.42 TCGA-BR-4362-01 2 216272919 216272919 C T FN1 Silent p.A810A 0.29 TCGA-BR-4362-01 2 216288950 216288950 G A FN1 Nonsense_Mutation p.R379* 0.19 TCGA-BR-4362-01 2 219528925 219528925 G - RNF25 Frame_Shift_Del p.L379Sfs*7 0.08 TCGA-BR-4362-01 2 220283174 220283174 G A DES 5'UTR 0.36 TCGA-BR-4362-01 2 220401863 220401863 C T ASIC4 Silent p.G543G 0.21 TCGA-BR-4362-01 2 224866464 224866464 C T SERPINE2 Missense_Mutation p.V64M 0.17 deleterious(0.01) probably_damaging(0.95) TCGA-BR-4362-01 2 225729333 225729333 T G DOCK10 Missense_Mutation p.K513N 0.20 deleterious(0) probably_damaging(0.998) TCGA-BR-4362-01 2 227661341 227661341 C - IRS1 Frame_Shift_Del p.G705Afs*29 0.29 TCGA-BR-4362-01 2 230312192 230312192 G A DNER Silent p.N442N 0.22 TCGA-BR-4362-01 2 231927286 231927287 - T PSMD1 Frame_Shift_Ins p.Y69Lfs*7 0.23 TCGA-BR-4362-01 2 232578077 232578077 T C PTMA 3'UTR 0.06 TCGA-BR-4362-01 2 233244695 233272776 2:233244695-233272776 - ALPP large deletion 0.09 TCGA-BR-4362-01 2 233408082 233408082 G A CHRNG Silent p.A301A 0.19 TCGA-BR-4362-01 2 233748147 233748147 G A NGEF Missense_Mutation p.P544L 0.33 deleterious(0.02) benign(0.157) TCGA-BR-4362-01 2 233759467 233759467 G A NGEF Missense_Mutation p.R330W 0.37 deleterious(0.01) probably_damaging(0.983) TCGA-BR-4362-01 2 234668959 234668959 G A UGT1A8 Intron 0.27 TCGA-BR-4362-01 2 234749838 234749838 T C HJURP Missense_Mutation p.T530A 0.05 tolerated(0.44) benign(0.003) TCGA-BR-4362-01 2 241439944 241439944 C A ANKMY1 Missense_Mutation p.K766N 0.31 tolerated(0.55) benign(0.006) TCGA-BR-4362-01 2 241536203 241536203 G - CAPN10 Frame_Shift_Del p.G531Afs*71 0.22 TCGA-BR-4362-01 2 242741320 242741320 G A GAL3ST2 Missense_Mutation p.V82M 0.15 deleterious(0.02) probably_damaging(0.94) TCGA-BR-4362-01 2 26203671 26203671 G A KIF3C Silent p.N372N 0.39 TCGA-BR-4362-01 2 26684636 26684636 C T OTOF Missense_Mutation p.E1821K 0.27 deleterious(0) possibly_damaging(0.513) TCGA-BR-4362-01 2 27001127 27001127 C T SLC35F6 Silent p.S288S 0.32 TCGA-BR-4362-01 2 272122 272122 G A ACP1 Intron 0.22 TCGA-BR-4362-01 2 27305128 27305128 G A EMILIN1 Missense_Mutation p.R230H 0.29 benign(0.032) TCGA-BR-4362-01 2 27458193 27458193 C T CAD Silent p.A1289A 0.27 TCGA-BR-4362-01 2 27460609 27460609 C T CAD Silent p.C1529C 0.21 TCGA-BR-4362-01 2 27479380 27479380 G - SLC30A3 Frame_Shift_Del p.R298Afs*167 0.30 TCGA-BR-4362-01 2 27505617 27505617 T G TRIM54 Silent p.G6G 0.13 TCGA-BR-4362-01 2 27666007 27666009 CTT - KRTCAP3 In_Frame_Del p.L115del 0.33 TCGA-BR-4362-01 2 27908027 27908027 A - SLC4A1AP Frame_Shift_Del p.K668Nfs*14 0.09 TCGA-BR-4362-01 2 31805786 31805786 G A SRD5A2 RNA 0.22 TCGA-BR-4362-01 2 32526480 32526480 A G YIPF4 Missense_Mutation p.I171M 0.32 deleterious(0) probably_damaging(0.964) TCGA-BR-4362-01 2 37255949 37255949 C T HEATR5B Missense_Mutation p.R1159Q 0.22 tolerated(0.21) benign(0.105) TCGA-BR-4362-01 2 38224583 38224583 A - RMDN2 Frame_Shift_Del p.M504Wfs*39 0.32 TCGA-BR-4362-01 2 39053105 39053105 G A DHX57 Silent p.G966G 0.20 TCGA-BR-4362-01 2 40392055 40392055 C T SLC8A1 Missense_Mutation p.R703H 0.30 deleterious(0.02) possibly_damaging(0.72) TCGA-BR-4362-01 2 42720441 42720441 C A KCNG3 Silent p.S67S 0.25 TCGA-BR-4362-01 2 42720476 42720476 G A KCNG3 Missense_Mutation p.R56C 0.24 tolerated(0.1) probably_damaging(0.93) TCGA-BR-4362-01 2 43458106 43458106 C A THADA Missense_Mutation p.R1948I 0.26 deleterious_low_confidence(0.01) benign(0.001) TCGA-BR-4362-01 2 44548581 44548581 T C PREPL Missense_Mutation p.T700A 0.28 tolerated(1) benign(0.004) TCGA-BR-4362-01 2 46596995 46596995 A C EPAS1 Missense_Mutation p.E270A 0.15 deleterious(0) possibly_damaging(0.816) TCGA-BR-4362-01 2 48046210 48046210 T C FBXO11 Missense_Mutation p.K602R 0.22 tolerated(0.1) probably_damaging(0.983) TCGA-BR-4362-01 2 54093345 54093345 T - PSME4 Frame_Shift_Del p.T1805Pfs*69 0.26 TCGA-BR-4362-01 2 60688143 60688143 C T BCL11A Missense_Mutation p.R635H 0.33 deleterious(0) possibly_damaging(0.522) TCGA-BR-4362-01 2 64111165 64111166 - AA UGP2 Frame_Shift_Ins p.I174Kfs*11 0.17 TCGA-BR-4362-01 2 69173591 69173591 G A GKN2 Missense_Mutation p.A106V 0.09 tolerated(0.09) benign(0.038) TCGA-BR-4362-01 2 70890743 70890743 G A ADD2 Silent p.G665G 0.26 TCGA-BR-4362-01 2 71191573 71191573 C - ATP6V1B1 Frame_Shift_Del p.I386Sfs*10 0.26 TCGA-BR-4362-01 2 71817411 71817411 T - DYSF Frame_Shift_Del p.S1191Lfs*19 0.29 TCGA-BR-4362-01 2 71839797 71839797 C - DYSF Frame_Shift_Del p.I1419Sfs*47 0.32 TCGA-BR-4362-01 2 73762058 73762058 G A ALMS1 Missense_Mutation p.V3296I 0.26 benign(0.004) TCGA-BR-4362-01 2 74058110 74058112 ATT - STAMBP In_Frame_Del p.I44del 0.13 TCGA-BR-4362-01 2 74140773 74140773 G T ACTG2 Missense_Mutation p.A205S 0.27 deleterious_low_confidence(0.04) benign(0.2) TCGA-BR-4362-01 2 74781909 74781910 - T DOK1 Frame_Shift_Ins p.L12Ffs*33 0.26 TCGA-BR-4362-01 2 75917175 75917175 C T GCFC2 Missense_Mutation p.G420E 0.20 deleterious(0.01) possibly_damaging(0.801) TCGA-BR-4362-01 2 80085151 80085151 G A CTNNA2 Missense_Mutation p.R104Q 0.22 tolerated(0.34) benign(0.149) TCGA-BR-4362-01 2 84658722 84658722 G A SUCLG1 Silent p.N245N 0.27 TCGA-BR-4362-01 2 84780090 84780090 A G DNAH6 Missense_Mutation p.M512V 0.25 tolerated(0.13) benign(0.001) TCGA-BR-4362-01 2 86433347 86433347 T C MRPL35 Silent p.V54V 0.07 TCGA-BR-4362-01 2 87000484 87000484 T C RMND5A Missense_Mutation p.Y376H 0.06 deleterious(0) probably_damaging(1) TCGA-BR-4362-01 2 87017507 87017507 G A CD8A Missense_Mutation p.S116L 0.25 tolerated(0.67) benign(0.232) TCGA-BR-4362-01 2 88409944 88409944 C A SMYD1 Silent p.R462R 0.31 TCGA-BR-4362-01 2 88857427 88857427 G T EIF2AK3 Missense_Mutation p.P1060T 0.25 tolerated(0.46) benign(0.029) TCGA-BR-4362-01 2 90044327 90044327 T C IGKV2D-24 Missense_Mutation p.V83A 0.20 deleterious(0.01) possibly_damaging(0.649) TCGA-BR-4362-01 2 95519065 95519065 T C ANKRD20A8P RNA 0.23 TCGA-BR-4362-01 2 98351887 98351887 C T ZAP70 Silent p.G419G 0.06 TCGA-BR-4362-01 2 98928817 98928817 G A VWA3B 3'UTR 0.39 TCGA-BR-4362-01 2 99688331 99688331 A G TSGA10 Silent p.C315C 0.05 TCGA-BR-4362-01 2 99999352 99999352 A - EIF5B Frame_Shift_Del p.K748Nfs*29 0.18 TCGA-BR-4362-01 3 101575980 101575980 C T NFKBIZ Missense_Mutation p.R630C 0.22 deleterious(0.01) probably_damaging(0.978) TCGA-BR-4362-01 3 102171933 102171933 A T ZPLD1 Missense_Mutation p.I109F 0.06 tolerated(0.22) benign(0.254) TCGA-BR-4362-01 3 108172981 108172981 A - MYH15 Frame_Shift_Del p.F777Lfs*12 0.22 TCGA-BR-4362-01 3 108220600 108220600 G A MYH15 Silent p.L120L 0.30 TCGA-BR-4362-01 3 108672654 108672654 A C GUCA1C 5'UTR 0.18 TCGA-BR-4362-01 3 11059010 11059010 C T SLC6A1 Missense_Mutation p.A38V 0.27 tolerated(0.2) benign(0.011) TCGA-BR-4362-01 3 113005771 113005771 A G BOC 3'UTR 0.21 TCGA-BR-4362-01 3 113085121 113085121 T - WDR52 Frame_Shift_Del p.N827Mfs*9 0.22 TCGA-BR-4362-01 3 113373752 113373752 T C KIAA2018 3'UTR 0.23 TCGA-BR-4362-01 3 11389392 11389392 G T ATG7 Missense_Mutation p.K389N 0.26 deleterious(0.04) benign(0.028) TCGA-BR-4362-01 3 114058003 114058003 G - ZBTB20 Frame_Shift_Del p.P692Lfs*43 0.24 TCGA-BR-4362-01 3 122474162 122474162 C T HSPBAP1 Missense_Mutation p.R229H 0.28 tolerated(0.17) benign(0.052) TCGA-BR-4362-01 3 124351289 124351289 C T KALRN Silent p.S36S 0.27 TCGA-BR-4362-01 3 125824741 125824741 G T ALDH1L1 Silent p.A837A 0.19 TCGA-BR-4362-01 3 126261003 126261003 G A CHST13 Missense_Mutation p.R203H 0.29 tolerated(0.08) probably_damaging(0.916) TCGA-BR-4362-01 3 127379771 127379771 C T PODXL2 Silent p.H300H 0.27 TCGA-BR-4362-01 3 128344441 128344441 G A RPN1 Missense_Mutation p.A444V 0.27 tolerated(0.67) benign(0.065) TCGA-BR-4362-01 3 12858373 12858373 C T CAND2 Missense_Mutation p.P648S 0.20 tolerated(0.12) possibly_damaging(0.715) TCGA-BR-4362-01 3 129231177 129231177 G A IFT122 Missense_Mutation p.R1021H 0.24 tolerated(0.44) possibly_damaging(0.493) TCGA-BR-4362-01 3 134920469 134920469 G A EPHB1 Missense_Mutation p.D762N 0.23 deleterious(0.01) probably_damaging(0.986) TCGA-BR-4362-01 3 134967254 134967254 C T EPHB1 Missense_Mutation p.R865W 0.28 deleterious(0) probably_damaging(1) TCGA-BR-4362-01 3 138338557 138338557 T - FAIM Intron 0.12 TCGA-BR-4362-01 3 138762837 138762837 C T PRR23C Missense_Mutation p.R209H 0.27 tolerated(0.54) benign(0.009) TCGA-BR-4362-01 3 14175298 14175298 T C TMEM43 Missense_Mutation p.F191S 0.25 tolerated(0.42) benign(0.038) TCGA-BR-4362-01 3 147108745 147108745 G A ZIC4 Missense_Mutation p.A376V 0.41 tolerated_low_confidence(0.39) benign(0.001) TCGA-BR-4362-01 3 151082912 151082912 C A MED12L Missense_Mutation p.L1000I 0.26 deleterious(0.03) probably_damaging(0.928) TCGA-BR-4362-01 3 153220352 153220352 A G C3orf79 3'UTR 0.37 TCGA-BR-4362-01 3 155210547 155210547 G C PLCH1 Missense_Mutation p.P748A 0.08 deleterious(0.01) probably_damaging(1) TCGA-BR-4362-01 3 156423064 156423065 - T TIPARP 3'UTR 0.32 TCGA-BR-4362-01 3 157004431 157004431 T G VEPH1 Missense_Mutation p.E681D 0.19 deleterious(0.05) benign(0.126) TCGA-BR-4362-01 3 160135634 160135634 A G SMC4 Missense_Mutation p.T521A 0.05 tolerated(0.27) benign(0.004) TCGA-BR-4362-01 3 160803879 160803879 T - B3GALNT1 Frame_Shift_Del p.T222Pfs*23 0.23 TCGA-BR-4362-01 3 161147222 161147222 C T RP11-3P17.4 RNA 0.29 TCGA-BR-4362-01 3 167745560 167745560 G A GOLIM4 Missense_Mutation p.R527C 0.29 deleterious(0.01) possibly_damaging(0.663) TCGA-BR-4362-01 3 169504444 169504444 T - MYNN Frame_Shift_Del p.L606Yfs*19 0.16 TCGA-BR-4362-01 3 170140971 170140971 G A CLDN11 Missense_Mutation p.A83T 0.23 deleterious(0) probably_damaging(0.994) TCGA-BR-4362-01 3 173322759 173322759 G A NLGN1 Missense_Mutation p.G124D 0.22 tolerated(0.08) probably_damaging(0.989) TCGA-BR-4362-01 3 183521871 183521871 G A YEATS2 Missense_Mutation p.A1227T 0.15 deleterious(0.03) benign(0.178) TCGA-BR-4362-01 3 18391030 18391030 G A SATB1 Nonsense_Mutation p.R674* 0.27 TCGA-BR-4362-01 3 184008885 184008885 C T ECE2 Missense_Mutation p.A749V 0.06 tolerated(0.07) benign(0.142) TCGA-BR-4362-01 3 184022156 184022156 G A PSMD2 Missense_Mutation p.G506R 0.24 tolerated(0.1) benign(0.356) TCGA-BR-4362-01 3 184025433 184025433 G A PSMD2 Silent p.L745L 0.31 TCGA-BR-4362-01 3 184040475 184040475 T C EIF4G1 Silent p.A591A 0.25 TCGA-BR-4362-01 3 184298195 184298195 C A EPHB3 Missense_Mutation p.N726K 0.23 tolerated(0.1) possibly_damaging(0.655) TCGA-BR-4362-01 3 18436246 18436246 G T SATB1 Missense_Mutation p.P305H 0.26 deleterious(0.02) benign(0.006) TCGA-BR-4362-01 3 184542471 184542471 G T VPS8 Missense_Mutation p.K17N 0.21 deleterious_low_confidence(0.02) benign(0.004) TCGA-BR-4362-01 3 184717545 184717545 G T VPS8 Missense_Mutation p.G1300C 0.25 deleterious(0.01) possibly_damaging(0.67) TCGA-BR-4362-01 3 184801181 184801181 A G C3orf70 Missense_Mutation p.Y123H 0.04 deleterious_low_confidence(0) possibly_damaging(0.731) TCGA-BR-4362-01 3 186504535 186504535 G A EIF4A2 Intron 0.27 TCGA-BR-4362-01 3 193048947 193048947 T G ATP13A5 Missense_Mutation p.M476L 0.23 tolerated(0.22) benign(0.04) TCGA-BR-4362-01 3 193361319 193361319 T C OPA1 Silent p.T442T 0.15 TCGA-BR-4362-01 3 194063301 194063301 G A CPN2 Missense_Mutation p.P44L 0.27 deleterious(0) probably_damaging(1) TCGA-BR-4362-01 3 194362736 194362736 A C LSG1 3'UTR 0.10 TCGA-BR-4362-01 3 196018210 196018210 A G TCTEX1D2 Silent p.C139C 0.06 TCGA-BR-4362-01 3 29781233 29781233 A G RBMS3 Missense_Mutation p.N141S 0.04 deleterious(0.03) probably_damaging(0.975) TCGA-BR-4362-01 3 32915308 32915308 A G TRIM71 Splice_Site p.X285_splice 0.26 TCGA-BR-4362-01 3 35748501 35748501 A - ARPP21 Frame_Shift_Del p.G243Vfs*10 0.12 TCGA-BR-4362-01 3 36484874 36484874 T G STAC Missense_Mutation p.S44A 0.17 deleterious(0) possibly_damaging(0.472) TCGA-BR-4362-01 3 36484922 36484922 T G STAC Missense_Mutation p.F60V 0.18 deleterious(0.03) possibly_damaging(0.787) TCGA-BR-4362-01 3 38163883 38163883 A G DLEC1 Missense_Mutation p.M1750V 0.22 tolerated(1) benign(0) TCGA-BR-4362-01 3 38357177 38357177 G A SLC22A14 Missense_Mutation p.A503T 0.31 deleterious(0.04) benign(0.408) TCGA-BR-4362-01 3 38651314 38651314 C T SCN5A Missense_Mutation p.R282H 0.24 tolerated(0.06) probably_damaging(0.999) TCGA-BR-4362-01 3 39230437 39230437 T G XIRP1 Missense_Mutation p.E167A 0.20 tolerated(0.61) benign(0.002) TCGA-BR-4362-01 3 41265509 41265509 T A CTNNB1 Intron 0.27 TCGA-BR-4362-01 3 42594846 42594846 A G SEC22C Missense_Mutation p.L269P 0.12 deleterious(0.03) probably_damaging(0.949) TCGA-BR-4362-01 3 42700986 42700986 G T ZBTB47 Missense_Mutation p.R380L 0.20 deleterious_low_confidence(0.01) unknown(0) TCGA-BR-4362-01 3 45067848 45067848 C T CLEC3B 5'UTR 0.26 TCGA-BR-4362-01 3 45837949 45837949 T C SLC6A20 5'UTR 0.17 TCGA-BR-4362-01 3 46497793 46497793 G A LTF Silent p.Y101Y 0.32 TCGA-BR-4362-01 3 47030358 47030358 C T NBEAL2 Missense_Mutation p.P56L 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-BR-4362-01 3 47466983 47466983 G A SCAP Silent p.L343L 0.29 TCGA-BR-4362-01 3 47555155 47555155 C A ELP6 5'UTR 0.15 TCGA-BR-4362-01 3 48612871 48612871 G - COL7A1 Frame_Shift_Del p.P2029Lfs*177 0.20 TCGA-BR-4362-01 3 48638477 48638477 C T UQCRC1 Silent p.P299P 0.29 TCGA-BR-4362-01 3 49042575 49042575 T C P4HTM Missense_Mutation p.M390T 0.33 tolerated_low_confidence(0.62) benign(0.092) TCGA-BR-4362-01 3 49149205 49149205 C T USP19 Missense_Mutation p.R980H 0.09 deleterious(0.01) probably_damaging(0.997) TCGA-BR-4362-01 3 49699821 49699821 C A BSN Missense_Mutation p.R3515S 0.32 unknown(0) TCGA-BR-4362-01 3 49949267 49949267 G A MON1A Missense_Mutation p.T199M 0.30 deleterious(0.01) probably_damaging(0.953) TCGA-BR-4362-01 3 50211525 50211525 T C SEMA3F Missense_Mutation p.V105A 0.11 tolerated(0.44) benign(0.155) TCGA-BR-4362-01 3 50289879 50289879 C T GNAI2 Missense_Mutation p.A71V 0.39 tolerated(0.11) probably_damaging(0.99) TCGA-BR-4362-01 3 50418494 50418494 C T CACNA2D2 Missense_Mutation p.R239H 0.29 tolerated(0.1) probably_damaging(0.939) TCGA-BR-4362-01 3 50645819 50645821 AGG - CISH In_Frame_Del p.S92del 0.27 TCGA-BR-4362-01 3 51457448 51457448 T - VPRBP Frame_Shift_Del p.K563Nfs*16 0.32 TCGA-BR-4362-01 3 51669660 51669660 C T RAD54L2 Silent p.G398G 0.16 TCGA-BR-4362-01 3 51746690 51746690 G A GRM2 Missense_Mutation p.E218K 0.26 deleterious(0) probably_damaging(1) TCGA-BR-4362-01 3 51994171 51994171 G A PCBP4 Intron 0.29 TCGA-BR-4362-01 3 51994571 51994571 C T PCBP4 Missense_Mutation p.V76I 0.13 deleterious(0) possibly_damaging(0.519) TCGA-BR-4362-01 3 52004061 52004061 G T ABHD14B Silent p.S117S 0.23 TCGA-BR-4362-01 3 52084813 52084813 C - DUSP7 3'UTR 0.25 TCGA-BR-4362-01 3 52245348 52245348 G T ALAS1 Silent p.L460L 0.28 TCGA-BR-4362-01 3 52379598 52379598 C T DNAH1 Missense_Mutation p.T511M 0.45 benign(0.007) TCGA-BR-4362-01 3 53781379 53781379 G A CACNA1D Missense_Mutation p.R1093H 0.32 tolerated(0.18) benign(0.006) TCGA-BR-4362-01 3 53898982 53898984 AAG - IL17RB In_Frame_Del p.K387del 0.19 TCGA-BR-4362-01 3 58134519 58134519 G A FLNB Missense_Mutation p.G2042S 0.33 deleterious(0) probably_damaging(1) TCGA-BR-4362-01 3 6903533 6903533 T C GRM7 Missense_Mutation p.V153A 0.17 deleterious(0) possibly_damaging(0.7) TCGA-BR-4362-01 3 69168508 69168508 C T LMOD3 Missense_Mutation p.C333Y 0.24 deleterious(0) probably_damaging(0.999) TCGA-BR-4362-01 3 69171477 69171477 C T LMOD3 Missense_Mutation p.D21N 0.32 deleterious(0) probably_damaging(0.917) TCGA-BR-4362-01 3 7621037 7621037 C T GRM7 Missense_Mutation p.A815V 0.30 tolerated(0.48) benign(0.371) TCGA-BR-4362-01 3 79174622 79174622 A C ROBO1 Missense_Mutation p.N52K 0.25 tolerated(0.07) benign(0.307) TCGA-BR-4362-01 4 100052797 100052797 T G ADH4 Missense_Mutation p.K234T 0.07 deleterious(0.01) probably_damaging(1) TCGA-BR-4362-01 4 100201419 100201419 A G ADH1A Silent p.C282C 0.04 TCGA-BR-4362-01 4 100515985 100515985 C T MTTP Missense_Mutation p.T285M 0.21 tolerated(0.25) benign(0.104) TCGA-BR-4362-01 4 103822407 103822407 A T SLC9B1 Missense_Mutation p.V472E 0.04 deleterious(0) possibly_damaging(0.873) TCGA-BR-4362-01 4 106621121 106621122 - A INTS12 Frame_Shift_Ins p.L14Ffs*12 0.23 TCGA-BR-4362-01 4 107114826 107114826 G A TBCK Missense_Mutation p.R667W 0.23 deleterious(0) probably_damaging(1) TCGA-BR-4362-01 4 109546367 109546367 A - RPL34 Frame_Shift_Del 0.16 TCGA-BR-4362-01 4 109546392 109546392 T A RPL34 3'UTR 0.22 TCGA-BR-4362-01 4 110223100 110223100 G A COL25A1 Missense_Mutation p.H26Y 0.28 tolerated(0.68) unknown(0) TCGA-BR-4362-01 4 110416004 110416004 T C SEC24B Missense_Mutation p.Y494H 0.06 deleterious(0.02) possibly_damaging(0.677) TCGA-BR-4362-01 4 110687927 110687927 T - CFI Frame_Shift_Del p.K37Nfs*65 0.28 TCGA-BR-4362-01 4 110885671 110885671 A T EGF Missense_Mutation p.D518V 0.06 deleterious(0) probably_damaging(1) TCGA-BR-4362-01 4 1161229 1161229 G - SPON2 3'UTR 0.27 TCGA-BR-4362-01 4 120189470 120189470 G C USP53 Missense_Mutation p.G395R 0.06 deleterious(0.04) benign(0.358) TCGA-BR-4362-01 4 121774675 121774675 T G PRDM5 Missense_Mutation p.E66D 0.24 tolerated(0.3) benign(0.006) TCGA-BR-4362-01 4 123542048 123542048 C T IL21 Missense_Mutation p.R40H 0.24 deleterious(0.04) benign(0.03) TCGA-BR-4362-01 4 1244750 1244750 G A CTBP1 5'Flank 0.25 TCGA-BR-4362-01 4 125591259 125591259 A T ANKRD50 Missense_Mutation p.I1058N 0.36 tolerated(0.49) benign(0.063) TCGA-BR-4362-01 4 125631821 125631821 C T ANKRD50 5'UTR 0.40 TCGA-BR-4362-01 4 126238232 126238232 G A FAT4 Silent p.V222V 0.35 TCGA-BR-4362-01 4 128864930 128864930 C T MFSD8 Missense_Mutation p.R139H 0.23 deleterious(0) probably_damaging(1) TCGA-BR-4362-01 4 128886310 128886310 T C MFSD8 5'UTR 0.33 TCGA-BR-4362-01 4 129812269 129812269 A C SCLT1 Missense_Mutation p.L618R 0.31 tolerated(0.53) benign(0.014) TCGA-BR-4362-01 4 13597501 13597501 C T BOD1L1 Missense_Mutation p.G2696E 0.16 benign(0.004) TCGA-BR-4362-01 4 13603668 13603668 G A BOD1L1 Missense_Mutation p.A1619V 0.25 benign(0.073) TCGA-BR-4362-01 4 139980201 139980201 G A ELF2 Missense_Mutation p.A561V 0.30 tolerated(0.32) benign(0.012) TCGA-BR-4362-01 4 148554111 148554111 G A TMEM184C Silent p.T279T 0.22 TCGA-BR-4362-01 4 149002528 149002528 C - NR3C2 Frame_Shift_Del p.N975Tfs*21 0.33 TCGA-BR-4362-01 4 149075852 149075852 C T NR3C2 Missense_Mutation p.V739I 0.25 tolerated(0.75) benign(0) TCGA-BR-4362-01 4 151765907 151765907 C T LRBA Missense_Mutation p.C1455Y 0.23 deleterious(0) probably_damaging(0.996) TCGA-BR-4362-01 4 155157153 155157153 T C DCHS2 Missense_Mutation p.Q2429R 0.21 deleterious(0.02) benign(0.356) TCGA-BR-4362-01 4 155254317 155254317 G A DCHS2 Missense_Mutation p.R516W 0.20 deleterious(0) probably_damaging(0.953) TCGA-BR-4362-01 4 156618181 156618181 C A GUCY1A3 Missense_Mutation p.N54K 0.29 tolerated(0.24) benign(0.002) TCGA-BR-4362-01 4 156832687 156832687 A T TDO2 Silent p.G219G 0.08 TCGA-BR-4362-01 4 15704742 15704742 G A BST1 5'UTR 0.40 TCGA-BR-4362-01 4 157684171 157684171 G A PDGFC 3'UTR 0.24 TCGA-BR-4362-01 4 160260432 160260432 T C RAPGEF2 Silent p.P659P 0.05 TCGA-BR-4362-01 4 170428203 170428203 T - NEK1 Frame_Shift_Del p.V665Cfs*34 0.50 TCGA-BR-4362-01 4 185339758 185339758 T - IRF2 Frame_Shift_Del p.S98Afs*2 0.28 TCGA-BR-4362-01 4 185340688 185340688 G A IRF2 Missense_Mutation p.A41V 0.21 deleterious(0) probably_damaging(0.919) TCGA-BR-4362-01 4 185637662 185637662 C T CENPU Silent p.A169A 0.22 TCGA-BR-4362-01 4 186068023 186068023 A G SLC25A4 Silent p.E265E 0.29 TCGA-BR-4362-01 4 187084649 187084649 G A FAM149A Missense_Mutation p.R302Q 0.34 deleterious(0.04) possibly_damaging(0.691) TCGA-BR-4362-01 4 189013068 189013068 G T TRIML2 Missense_Mutation p.A208D 0.30 deleterious(0) probably_damaging(1) TCGA-BR-4362-01 4 1955098 1955098 C T WHSC1 Missense_Mutation p.R729C 0.32 deleterious(0) probably_damaging(0.999) TCGA-BR-4362-01 4 20709442 20709442 G A PACRGL Missense_Mutation p.R75Q 0.20 tolerated(0.19) benign(0.01) TCGA-BR-4362-01 4 22390136 22390136 A C GPR125 Missense_Mutation p.V1053G 0.29 deleterious(0) benign(0.005) TCGA-BR-4362-01 4 24541776 24541776 A G DHX15 Missense_Mutation p.Y581H 0.06 tolerated(0.14) benign(0.008) TCGA-BR-4362-01 4 24854802 24854802 C A CCDC149 Splice_Site p.X89_splice 0.26 TCGA-BR-4362-01 4 3107097 3107097 G A HTT Missense_Mutation p.R181Q 0.38 benign(0.109) TCGA-BR-4362-01 4 36134893 36134893 C T ARAP2 Missense_Mutation p.V1128I 0.28 tolerated(0.59) benign(0.353) TCGA-BR-4362-01 4 41984913 41984913 C T DCAF4L1 Silent p.F368F 0.35 TCGA-BR-4362-01 4 47597894 47597894 A G CORIN Silent p.C991C 0.31 TCGA-BR-4362-01 4 48625144 48625144 T C FRYL Missense_Mutation p.Q58R 0.12 deleterious(0) probably_damaging(0.995) TCGA-BR-4362-01 4 48859371 48859372 - A OCIAD1 Frame_Shift_Ins p.E233Rfs*13 0.09 TCGA-BR-4362-01 4 48894833 48894833 A - OCIAD2 Frame_Shift_Del p.F113Lfs*27 0.27 TCGA-BR-4362-01 4 55129887 55129887 G A PDGFRA Missense_Mutation p.E141K 0.31 tolerated(0.85) benign(0.028) TCGA-BR-4362-01 4 55139866 55139866 T C PDGFRA Silent p.A509A 0.19 TCGA-BR-4362-01 4 5754612 5754612 A G EVC Missense_Mutation p.E383G 0.23 deleterious(0.01) possibly_damaging(0.8) TCGA-BR-4362-01 4 5837754 5837754 T G CRMP1 Missense_Mutation p.K504T 0.22 deleterious(0) probably_damaging(1) TCGA-BR-4362-01 4 5838618 5838618 G A CRMP1 Silent p.V442V 0.19 TCGA-BR-4362-01 4 62761492 62761492 T C LPHN3 Silent p.D541D 0.16 TCGA-BR-4362-01 4 65274998 65274999 - A TECRL Frame_Shift_Ins p.I25Hfs*5 0.22 TCGA-BR-4362-01 4 7435678 7435678 G T PSAPL1 Missense_Mutation p.S310Y 0.27 deleterious(0) probably_damaging(0.947) TCGA-BR-4362-01 4 75681147 75681147 C A BTC Missense_Mutation p.R68M 0.25 tolerated(0.08) benign(0.153) TCGA-BR-4362-01 4 76891521 76891521 T - SDAD1 Frame_Shift_Del p.K275Rfs*15 0.26 TCGA-BR-4362-01 4 7715973 7715973 C T SORCS2 Missense_Mutation p.R666C 0.26 tolerated(0.06) possibly_damaging(0.696) TCGA-BR-4362-01 4 81196142 81196142 A - FGF5 Frame_Shift_Del p.G148Efs*45 0.20 TCGA-BR-4362-01 4 85600249 85600249 T C WDFY3 Missense_Mutation p.T3324A 0.25 tolerated(1) benign(0) TCGA-BR-4362-01 4 876506 876506 G A GAK Silent p.N502N 0.25 TCGA-BR-4362-01 4 87685814 87685814 G A PTPN13 Silent p.K1362K 0.28 TCGA-BR-4362-01 4 88116486 88116486 A G KLHL8 Missense_Mutation p.V69A 0.11 deleterious(0) probably_damaging(0.934) TCGA-BR-4362-01 4 951841 951841 G T TMEM175 Missense_Mutation p.A358S 0.32 deleterious(0.01) possibly_damaging(0.78) TCGA-BR-4362-01 4 96166150 96166150 T C UNC5C Missense_Mutation p.I307M 0.25 tolerated(0.08) benign(0.016) TCGA-BR-4362-01 5 1038076 1038076 G A NKD2 Missense_Mutation p.R315Q 0.24 deleterious(0.01) probably_damaging(1) TCGA-BR-4362-01 5 107700605 107700605 C T FBXL17 Missense_Mutation p.G403D 0.17 deleterious(0) probably_damaging(0.995) TCGA-BR-4362-01 5 110439999 110439999 T G WDR36 Missense_Mutation p.F341C 0.09 tolerated(0.35) benign(0.179) TCGA-BR-4362-01 5 112164562 112164562 A G APC Missense_Mutation p.S546G 0.08 benign(0.396) TCGA-BR-4362-01 5 112379243 112379243 T C MCC Missense_Mutation p.T914A 0.36 tolerated(1) benign(0.005) TCGA-BR-4362-01 5 112769928 112769928 G A TSSK1B Silent p.G203G 0.24 TCGA-BR-4362-01 5 11384949 11384949 G - CTNND2 Frame_Shift_Del p.T336Pfs*14 0.28 TCGA-BR-4362-01 5 115336805 115336805 A - AQPEP Frame_Shift_Del p.N565Tfs*2 0.24 TCGA-BR-4362-01 5 118433795 118433795 G A DMXL1 Missense_Mutation p.G70D 0.26 deleterious(0) probably_damaging(0.973) TCGA-BR-4362-01 5 129072766 129072766 T G ADAMTS19 Missense_Mutation p.L1160R 0.08 deleterious(0) probably_damaging(0.997) TCGA-BR-4362-01 5 131080362 131080362 A G FNIP1 Silent p.D38D 0.11 TCGA-BR-4362-01 5 131607966 131607966 G A PDLIM4 3'UTR 0.34 TCGA-BR-4362-01 5 133478495 133478495 T C TCF7 Missense_Mutation p.M280T 0.35 deleterious(0) possibly_damaging(0.774) TCGA-BR-4362-01 5 134305635 134305635 C T CATSPER3 Silent p.N35N 0.27 TCGA-BR-4362-01 5 134332192 134332192 A G CATSPER3 Missense_Mutation p.Q161R 0.23 tolerated(1) benign(0.001) TCGA-BR-4362-01 5 137519724 137519724 G T KIF20A Nonsense_Mutation p.G428* 0.12 TCGA-BR-4362-01 5 137525405 137525405 G A CDC23 Missense_Mutation p.R514C 0.27 deleterious(0.02) benign(0.072) TCGA-BR-4362-01 5 138253516 138253516 A - CTNNA1 Frame_Shift_Del p.K493Nfs*31 0.24 TCGA-BR-4362-01 5 138268334 138268334 A G CTNNA1 Missense_Mutation p.Q789R 0.26 deleterious(0) probably_damaging(0.994) TCGA-BR-4362-01 5 139941778 139941778 G A APBB3 Missense_Mutation p.A178V 0.35 deleterious(0.04) benign(0.004) TCGA-BR-4362-01 5 140023147 140023147 A G TMCO6 Splice_Site p.X269_splice 0.25 TCGA-BR-4362-01 5 140188686 140188686 C T PCDHA4 Silent p.D638D 0.22 TCGA-BR-4362-01 5 140202575 140202575 G A PCDHA5 Silent p.S405S 0.25 TCGA-BR-4362-01 5 140221176 140221176 C T PCDHA8 Silent p.I90I 0.15 TCGA-BR-4362-01 5 140257241 140257241 C T PCDHA12 Silent p.T728T 0.33 TCGA-BR-4362-01 5 140503797 140503797 C T PCDHB4 Silent p.S739S 0.28 TCGA-BR-4362-01 5 140559636 140559636 T C PCDHB8 Missense_Mutation p.L674P 0.29 tolerated_low_confidence(0.14) benign(0.038) TCGA-BR-4362-01 5 140562237 140562237 G A PCDHB16 Missense_Mutation p.V35I 0.27 tolerated_low_confidence(0.15) benign(0.011) TCGA-BR-4362-01 5 140580848 140580848 G A PCDHB11 Missense_Mutation p.A501T 0.22 tolerated_low_confidence(0.12) benign(0.089) TCGA-BR-4362-01 5 140594607 140594607 A - PCDHB13 Frame_Shift_Del p.K306Nfs*30 0.30 TCGA-BR-4362-01 5 140616130 140616130 G A PCDHB18 RNA 0.30 TCGA-BR-4362-01 5 140626735 140626735 G A PCDHB15 Missense_Mutation p.R530H 0.22 tolerated_low_confidence(0.25) benign(0.028) TCGA-BR-4362-01 5 140683099 140683099 C T SLC25A2 Missense_Mutation p.A112T 0.27 deleterious(0) probably_damaging(0.974) TCGA-BR-4362-01 5 140756049 140756049 C T PCDHGA6 Missense_Mutation p.T800M 0.28 tolerated_low_confidence(0.24) benign(0.023) TCGA-BR-4362-01 5 140811041 140811041 G A PCDHGA12 Missense_Mutation p.A239T 0.25 tolerated_low_confidence(0.1) benign(0.07) TCGA-BR-4362-01 5 141243692 141243692 G A PCDH1 Missense_Mutation p.T735M 0.15 deleterious(0.01) possibly_damaging(0.615) TCGA-BR-4362-01 5 14498254 14498254 G A TRIO Missense_Mutation p.V2702I 0.41 unknown(0) TCGA-BR-4362-01 5 145650551 145650551 T G RBM27 Missense_Mutation p.L909R 0.27 deleterious(0) benign(0.406) TCGA-BR-4362-01 5 145665677 145665677 A - RBM27 3'UTR 0.30 TCGA-BR-4362-01 5 148386495 148386495 G C SH3TC2 Nonsense_Mutation p.Y1208* 0.06 TCGA-BR-4362-01 5 149677000 149677000 T C ARSI Missense_Mutation p.N496S 0.06 tolerated(0.05) benign(0.408) TCGA-BR-4362-01 5 149776323 149776323 G A TCOF1 Silent p.E1420E 0.28 TCGA-BR-4362-01 5 149901204 149901204 C T NDST1 Missense_Mutation p.R130C 0.22 deleterious(0) probably_damaging(0.973) TCGA-BR-4362-01 5 149921174 149921174 G A NDST1 Missense_Mutation p.E598K 0.21 tolerated(0.06) probably_damaging(0.91) TCGA-BR-4362-01 5 150946762 150946762 C T FAT2 Nonsense_Mutation p.W577* 0.31 TCGA-BR-4362-01 5 150948282 150948282 A G FAT2 Missense_Mutation p.Y71H 0.09 probably_damaging(0.99) TCGA-BR-4362-01 5 151179453 151179453 C T G3BP1 Missense_Mutation p.R283C 0.11 tolerated(0.09) benign(0) TCGA-BR-4362-01 5 154284999 154284999 T C GEMIN5 Silent p.S811S 0.28 TCGA-BR-4362-01 5 154395130 154395130 C T KIF4B Silent p.L571L 0.27 TCGA-BR-4362-01 5 156592737 156592737 C T FAM71B Missense_Mutation p.R148H 0.24 deleterious(0) probably_damaging(0.955) TCGA-BR-4362-01 5 156964960 156964960 A C ADAM19 Silent p.T97T 0.28 TCGA-BR-4362-01 5 15936943 15936943 G A FBXL7 Missense_Mutation p.C375Y 0.35 deleterious(0) probably_damaging(0.998) TCGA-BR-4362-01 5 160076199 160076199 A T ATP10B Missense_Mutation p.L247H 0.23 deleterious(0) probably_damaging(0.998) TCGA-BR-4362-01 5 161292772 161292772 G T GABRA1 Missense_Mutation p.G78V 0.19 deleterious(0) possibly_damaging(0.657) TCGA-BR-4362-01 5 162887021 162887021 T C NUDCD2 Silent p.V12V 0.05 TCGA-BR-4362-01 5 16465449 16465449 A G ZNF622 Missense_Mutation p.M109T 0.06 deleterious(0.03) benign(0.254) TCGA-BR-4362-01 5 167957204 167957204 C T FBLL1 Missense_Mutation p.P232L 0.19 deleterious(0) probably_damaging(1) TCGA-BR-4362-01 5 173383109 173383109 G A CPEB4 Missense_Mutation p.R720H 0.33 deleterious(0) probably_damaging(0.995) TCGA-BR-4362-01 5 174937167 174937167 G A SFXN1 Missense_Mutation p.V131I 0.23 deleterious(0) possibly_damaging(0.721) TCGA-BR-4362-01 5 177682023 177682023 G A COL23A1 Missense_Mutation p.A296V 0.29 tolerated(0.11) benign(0.372) TCGA-BR-4362-01 5 177987735 177987735 T C COL23A1 Silent p.L103L 0.18 TCGA-BR-4362-01 5 179044087 179044089 AAG - HNRNPH1 In_Frame_Del p.F360del 0.26 TCGA-BR-4362-01 5 180048190 180048190 G A FLT4 Silent p.L695L 0.27 TCGA-BR-4362-01 5 180218991 180218991 C T MGAT1 Silent p.Q327Q 0.28 TCGA-BR-4362-01 5 180486594 180486594 G A BTNL9 Missense_Mutation p.R447Q 0.31 tolerated(0.18) possibly_damaging(0.737) TCGA-BR-4362-01 5 21802401 21802401 G A CDH12 Silent p.D377D 0.37 TCGA-BR-4362-01 5 24493022 24493022 T G CDH10 Missense_Mutation p.I510L 0.17 tolerated(0.12) benign(0.233) TCGA-BR-4362-01 5 2749790 2749793 CGTT GG IRX2 Frame_Shift_Del p.N120Pfs*69 0.38 TCGA-BR-4362-01 5 31534401 31534401 C T C5orf22 Missense_Mutation p.A35V 0.19 deleterious(0) probably_damaging(0.99) TCGA-BR-4362-01 5 32417836 32417836 T A ZFR Missense_Mutation p.Y161F 0.20 tolerated(0.17) possibly_damaging(0.899) TCGA-BR-4362-01 5 33658358 33658358 C T ADAMTS12 Missense_Mutation p.R374H 0.11 deleterious(0) probably_damaging(0.983) TCGA-BR-4362-01 5 34043119 34043119 C T C1QTNF3 Missense_Mutation p.A38T 0.20 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-BR-4362-01 5 36985528 36985528 A - NIPBL Frame_Shift_Del p.N751Mfs*43 0.20 TCGA-BR-4362-01 5 37727018 37727019 CT - WDR70 Frame_Shift_Del p.S585Ffs*14 0.25 TCGA-BR-4362-01 5 39203039 39203040 - C FYB Frame_Shift_Ins p.N19Qfs*10 0.38 TCGA-BR-4362-01 5 39288948 39288948 T C C9 Missense_Mutation p.R508G 0.15 tolerated(0.13) benign(0.079) TCGA-BR-4362-01 5 39316123 39316123 G A C9 Silent p.G208G 0.29 TCGA-BR-4362-01 5 41201782 41201782 A T C6 Missense_Mutation p.F60I 0.15 tolerated(0.38) benign(0.328) TCGA-BR-4362-01 5 41313570 41313570 A T PLCXD3 3'UTR 0.18 TCGA-BR-4362-01 5 53814454 53814454 C A SNX18 Silent p.T224T 0.32 TCGA-BR-4362-01 5 55247857 55247857 G A IL6ST Silent p.N533N 0.33 TCGA-BR-4362-01 5 56209799 56209799 T C SETD9 Missense_Mutation p.V230A 0.07 deleterious(0) probably_damaging(0.999) TCGA-BR-4362-01 5 63257304 63257304 G A HTR1A Silent p.T81T 0.30 TCGA-BR-4362-01 5 68805114 68805114 G A OCLN Missense_Mutation p.R66Q 0.29 deleterious(0.01) possibly_damaging(0.54) TCGA-BR-4362-01 5 71490958 71490958 G A MAP1B Silent p.K592K 0.25 TCGA-BR-4362-01 5 74130280 74130280 G A FAM169A Missense_Mutation p.A154V 0.26 deleterious(0) probably_damaging(1) TCGA-BR-4362-01 5 74643075 74643075 C T HMGCR Missense_Mutation p.P166L 0.05 deleterious(0.02) probably_damaging(0.975) TCGA-BR-4362-01 5 76785281 76785281 C T WDR41 Splice_Site p.X56_splice 0.06 TCGA-BR-4362-01 5 7866040 7866040 C A FASTKD3 Missense_Mutation p.A499S 0.13 tolerated(0.19) benign(0.004) TCGA-BR-4362-01 5 79027504 79027504 C T CMYA5 Silent p.C972C 0.34 TCGA-BR-4362-01 5 864545 864546 - A BRD9 3'UTR 0.18 TCGA-BR-4362-01 5 96139461 96139461 A G ERAP1 Missense_Mutation p.Y57H 0.04 tolerated(0.56) benign(0.003) TCGA-BR-4362-01 6 100896103 100896103 G T SIM1 Missense_Mutation p.P257T 0.38 deleterious(0) probably_damaging(0.957) TCGA-BR-4362-01 6 10398591 10398591 G A TFAP2A 3'UTR 0.19 TCGA-BR-4362-01 6 105563668 105563668 C T BVES Missense_Mutation p.C284Y 0.41 deleterious(0) possibly_damaging(0.895) TCGA-BR-4362-01 6 10935386 10935386 T - SYCP2L Frame_Shift_Del p.L595* 0.16 TCGA-BR-4362-01 6 110530384 110530384 G T CDC40 Missense_Mutation p.W196C 0.21 deleterious(0) probably_damaging(0.999) TCGA-BR-4362-01 6 111697457 111697457 T C REV3L Missense_Mutation p.T701A 0.50 tolerated_low_confidence(0.34) benign(0.001) TCGA-BR-4362-01 6 112460455 112460455 T C LAMA4 Missense_Mutation p.Y1050C 0.04 deleterious(0) probably_damaging(0.999) TCGA-BR-4362-01 6 116442889 116442889 T A COL10A1 Silent p.G130G 0.16 TCGA-BR-4362-01 6 119285926 119285926 T G FAM184A Missense_Mutation p.K1015T 0.24 deleterious(0) probably_damaging(0.958) TCGA-BR-4362-01 6 127517289 127517289 A G RSPO3 3'UTR 0.14 TCGA-BR-4362-01 6 127652056 127652056 T - ECHDC1 Frame_Shift_Del p.T46Hfs*24 0.28 TCGA-BR-4362-01 6 128505813 128505813 A G PTPRK Missense_Mutation p.L309P 0.19 tolerated(0.09) possibly_damaging(0.663) TCGA-BR-4362-01 6 129781432 129781432 C T LAMA2 Nonsense_Mutation p.R2319* 0.19 TCGA-BR-4362-01 6 131481276 131481276 A - AKAP7 Frame_Shift_Del p.K79Rfs*21 0.36 TCGA-BR-4362-01 6 131904532 131904532 G A ARG1 Missense_Mutation p.G243R 0.37 deleterious(0) probably_damaging(0.998) TCGA-BR-4362-01 6 132892319 132892319 A G TAAR6 Missense_Mutation p.I287V 0.42 tolerated(0.08) benign(0.05) TCGA-BR-4362-01 6 134312170 134312170 T C SLC2A12 3'UTR 0.44 TCGA-BR-4362-01 6 136599456 136599456 T C BCLAF1 Missense_Mutation p.K188R 0.08 deleterious_low_confidence(0.03) possibly_damaging(0.486) TCGA-BR-4362-01 6 137815411 137815411 T C OLIG3 5'UTR 0.46 TCGA-BR-4362-01 6 138584224 138584224 G A KIAA1244 Missense_Mutation p.S535N 0.20 tolerated(0.31) benign(0.033) TCGA-BR-4362-01 6 1390547 1390547 C T FOXF2 Missense_Mutation p.T122M 0.50 deleterious(0) probably_damaging(1) TCGA-BR-4362-01 6 139488146 139488147 - G HECA Frame_Shift_Ins p.H336Tfs*25 0.15 TCGA-BR-4362-01 6 139563773 139563773 C T TXLNB Missense_Mutation p.E649K 0.38 tolerated_low_confidence(0.05) benign(0.011) TCGA-BR-4362-01 6 144898277 144898277 G A UTRN Silent p.T2444T 0.52 TCGA-BR-4362-01 6 146247355 146247355 G A SHPRH Silent p.G1093G 0.18 TCGA-BR-4362-01 6 146755082 146755082 G A GRM1 Missense_Mutation p.R912H 0.43 deleterious(0) probably_damaging(0.953) TCGA-BR-4362-01 6 149721537 149721537 G A SUMO4 Missense_Mutation p.E4K 0.18 tolerated(0.17) benign(0.171) TCGA-BR-4362-01 6 150385828 150385828 C T ULBP3 Missense_Mutation p.G217D 0.06 tolerated(0.57) benign(0.124) TCGA-BR-4362-01 6 151281413 151281413 G A MTHFD1L Silent p.A602A 0.35 TCGA-BR-4362-01 6 151670523 151670524 - A AKAP12 Frame_Shift_Ins p.V335Sfs*39 0.20 TCGA-BR-4362-01 6 151670579 151670579 C T AKAP12 Silent p.T351T 0.48 TCGA-BR-4362-01 6 151775736 151775736 T C C6orf211 Missense_Mutation p.V32A 0.04 tolerated(0.43) benign(0.026) TCGA-BR-4362-01 6 15246694 15246695 - T JARID2 5'UTR 0.38 TCGA-BR-4362-01 6 152639444 152639444 A T SYNE1 Intron 0.45 TCGA-BR-4362-01 6 153043068 153043068 G A MYCT1 Missense_Mutation p.G130S 0.15 tolerated(0.73) possibly_damaging(0.615) TCGA-BR-4362-01 6 155148344 155148344 C - SCAF8 Frame_Shift_Del p.P705Lfs*6 0.19 TCGA-BR-4362-01 6 155635562 155635562 T C TFB1M Translation_Start_Site p.M1? 0.24 deleterious_low_confidence(0) benign(0.139) TCGA-BR-4362-01 6 157525016 157525016 G A ARID1B Nonsense_Mutation p.W1637* 0.05 TCGA-BR-4362-01 6 157527398 157527398 A - ARID1B Frame_Shift_Del p.A1710Hfs*56 0.20 TCGA-BR-4362-01 6 157744464 157744464 T A TMEM242 Missense_Mutation p.D23V 0.07 deleterious(0) probably_damaging(0.91) TCGA-BR-4362-01 6 158923938 158923938 C T TULP4 Silent p.T1081T 0.17 TCGA-BR-4362-01 6 159399367 159399367 C A RSPH3 Nonsense_Mutation p.G433* 0.27 TCGA-BR-4362-01 6 160483631 160483631 G T IGF2R Missense_Mutation p.C1217F 0.48 deleterious(0) probably_damaging(1) TCGA-BR-4362-01 6 163987081 163987081 A - QKI Intron 0.14 TCGA-BR-4362-01 6 163987700 163987701 TC - QKI Intron 0.20 TCGA-BR-4362-01 6 166833418 166833418 G A RPS6KA2 Missense_Mutation p.A599V 0.36 deleterious(0.01) possibly_damaging(0.464) TCGA-BR-4362-01 6 168439368 168439368 A G KIF25 Silent p.T151T 0.25 TCGA-BR-4362-01 6 170594674 170594674 C - DLL1 Frame_Shift_Del p.G282Afs*8 0.24 TCGA-BR-4362-01 6 170871119 170871119 G T TBP Missense_Mutation p.A99S 0.33 tolerated_low_confidence(0.83) unknown(0) TCGA-BR-4362-01 6 18222307 18222307 A - KDM1B 3'UTR 0.36 TCGA-BR-4362-01 6 24436838 24436838 C T GPLD1 Missense_Mutation p.C775Y 0.19 deleterious(0) probably_damaging(0.999) TCGA-BR-4362-01 6 24569143 24569143 A G KIAA0319 Missense_Mutation p.V669A 0.44 deleterious(0.04) probably_damaging(0.946) TCGA-BR-4362-01 6 26017954 26017954 C T HIST1H1A Missense_Mutation p.E3K 0.17 deleterious(0) unknown(0) TCGA-BR-4362-01 6 26124423 26124423 C T HIST1H2AC 5'Flank 0.24 TCGA-BR-4362-01 6 26247036 26247036 C T HIST1H4G Missense_Mutation p.R57Q 0.23 deleterious(0.02) benign(0.003) TCGA-BR-4362-01 6 27368839 27368839 C T ZNF391 Silent p.F230F 0.15 TCGA-BR-4362-01 6 27860700 27860700 C T HIST1H2AM Silent p.K76K 0.24 TCGA-BR-4362-01 6 28554497 28554497 C T SCAND3 5'UTR 0.20 TCGA-BR-4362-01 6 28963809 28963809 T - ZNF311 Frame_Shift_Del p.T324Pfs*83 0.26 TCGA-BR-4362-01 6 29323702 29323702 T - OR5V1 Frame_Shift_Del p.S91Afs*18 0.34 TCGA-BR-4362-01 6 29691119 29691119 T G HLA-F 5'Flank 0.18 TCGA-BR-4362-01 6 29911150 29911150 T C HLA-A Missense_Mutation p.L150P 0.13 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-BR-4362-01 6 30114888 30114888 G A TRIM40 Missense_Mutation p.A161T 0.25 tolerated(0.11) benign(0.335) TCGA-BR-4362-01 6 30140160 30140160 G A TRIM15 3'UTR 0.26 TCGA-BR-4362-01 6 30653521 30653521 C T PPP1R18 Missense_Mutation p.R92Q 0.12 tolerated(0.29) benign(0.04) TCGA-BR-4362-01 6 30680469 30680469 G A MDC1 Missense_Mutation p.A417V 0.47 tolerated(0.12) probably_damaging(0.978) TCGA-BR-4362-01 6 31473919 31473919 G T MICB Splice_Site p.X109_splice 0.46 TCGA-BR-4362-01 6 31584673 31584673 C T AIF1 Missense_Mutation p.P147L 0.21 deleterious(0) probably_damaging(0.999) TCGA-BR-4362-01 6 31602641 31602641 C - PRRC2A Frame_Shift_Del p.K1685Rfs*9 0.39 TCGA-BR-4362-01 6 31608183 31608183 A C BAG6 Silent p.P1009P 0.08 TCGA-BR-4362-01 6 31668789 31668789 G A ABHD16A Silent p.S91S 0.21 TCGA-BR-4362-01 6 31765402 31765402 A - LSM2 3'UTR 0.45 TCGA-BR-4362-01 6 31922385 31922385 C T NELFE Missense_Mutation p.R230Q 0.22 tolerated_low_confidence(0.21) unknown(0) TCGA-BR-4362-01 6 32410986 32410986 C T HLA-DRA Missense_Mutation p.T118I 0.35 deleterious(0.03) benign(0.231) TCGA-BR-4362-01 6 32782224 32782224 G A HLA-DOB Silent p.G172G 0.19 TCGA-BR-4362-01 6 32948188 32948188 G A BRD2 Missense_Mutation p.R774Q 0.24 deleterious(0.04) benign(0.238) TCGA-BR-4362-01 6 33133489 33133489 C T COL11A2 Silent p.P1443P 0.22 TCGA-BR-4362-01 6 33166143 33166144 - G RXRB Frame_Shift_Ins p.P195Sfs*29 0.35 TCGA-BR-4362-01 6 33236883 33236883 T C VPS52 Silent p.G152G 0.19 TCGA-BR-4362-01 6 33287897 33287897 T C DAXX Silent p.E452E 0.23 TCGA-BR-4362-01 6 33288217 33288217 C T DAXX Silent p.R397R 0.20 TCGA-BR-4362-01 6 33400582 33400582 C T SYNGAP1 Missense_Mutation p.R170W 0.15 deleterious(0) possibly_damaging(0.77) TCGA-BR-4362-01 6 33411637 33411637 G A SYNGAP1 Missense_Mutation p.R1103H 0.35 tolerated(0.08) benign(0.027) TCGA-BR-4362-01 6 33638551 33638551 G A ITPR3 Missense_Mutation p.V849M 0.07 tolerated(0.22) benign(0.012) TCGA-BR-4362-01 6 36274154 36274154 G A PNPLA1 Splice_Site p.X490_splice 0.46 TCGA-BR-4362-01 6 37626035 37626035 C T MDGA1 Missense_Mutation p.R123H 0.45 deleterious(0.02) probably_damaging(0.998) TCGA-BR-4362-01 6 38690822 38690822 G A DNAH8 5'Flank 0.18 TCGA-BR-4362-01 6 39580993 39580993 A - KIF6 Frame_Shift_Del p.L204* 0.23 TCGA-BR-4362-01 6 4044084 4044084 T C PRPF4B Missense_Mutation p.V563A 0.22 tolerated(0.49) unknown(0) TCGA-BR-4362-01 6 41035012 41035012 G A OARD1 3'UTR 0.22 TCGA-BR-4362-01 6 41555186 41555186 C - FOXP4 Frame_Shift_Del p.L272Sfs*95 0.41 TCGA-BR-4362-01 6 41739124 41739124 C A FRS3 Missense_Mutation p.G238C 0.13 deleterious(0.01) probably_damaging(0.996) TCGA-BR-4362-01 6 41903835 41903835 C T CCND3 Missense_Mutation p.R241Q 0.12 tolerated(0.14) possibly_damaging(0.565) TCGA-BR-4362-01 6 42146991 42146991 C A GUCA1A Silent p.S152S 0.45 TCGA-BR-4362-01 6 42797828 42797828 G A GLTSCR1L Missense_Mutation p.R586H 0.08 deleterious(0.01) probably_damaging(0.96) TCGA-BR-4362-01 6 42933450 42933450 G A PEX6 Nonsense_Mutation p.R814* 0.24 TCGA-BR-4362-01 6 42946217 42946217 C A PEX6 Missense_Mutation p.W224C 0.33 tolerated(0.11) possibly_damaging(0.887) TCGA-BR-4362-01 6 43113108 43113108 C T PTK7 Missense_Mutation p.R868W 0.34 deleterious(0) probably_damaging(0.993) TCGA-BR-4362-01 6 43323194 43323194 T C ZNF318 Silent p.L626L 0.20 TCGA-BR-4362-01 6 43494448 43494448 A G XPO5 Silent p.S986S 0.08 TCGA-BR-4362-01 6 44226931 44226931 T C NFKBIE 3'UTR 0.40 TCGA-BR-4362-01 6 44360532 44360532 C T CDC5L Missense_Mutation p.A93V 0.07 deleterious(0.01) probably_damaging(0.995) TCGA-BR-4362-01 6 46679343 46679343 A G PLA2G7 Missense_Mutation p.S185P 0.46 deleterious(0) probably_damaging(0.984) TCGA-BR-4362-01 6 49986805 49986805 T C DEFB110 Missense_Mutation p.D30G 0.11 deleterious(0.04) benign(0.128) TCGA-BR-4362-01 6 53370226 53370226 A G GCLC Silent p.L453L 0.13 TCGA-BR-4362-01 6 56434717 56434717 T - DST Frame_Shift_Del p.V1983Ffs*13 0.31 TCGA-BR-4362-01 6 56483162 56483162 C T DST Intron 0.27 TCGA-BR-4362-01 6 656665 656665 C T HUS1B Missense_Mutation p.A94T 0.15 tolerated(0.08) benign(0.235) TCGA-BR-4362-01 6 656846 656846 G A HUS1B Silent p.R33R 0.14 TCGA-BR-4362-01 6 70070871 70070871 A T BAI3 Missense_Mutation p.S1236C 0.20 deleterious(0) possibly_damaging(0.533) TCGA-BR-4362-01 6 72011416 72011416 T G OGFRL1 Silent p.T340T 0.13 TCGA-BR-4362-01 6 73100438 73100438 A C RIMS1 Missense_Mutation p.N1502T 0.18 deleterious(0) benign(0.257) TCGA-BR-4362-01 6 74063580 74063580 C T DPPA5 Silent p.E96E 0.50 TCGA-BR-4362-01 6 75840613 75840614 AC - COL12A1 Frame_Shift_Del p.Y2008Lfs*28 0.23 TCGA-BR-4362-01 6 78172873 78172873 G - HTR1B Frame_Shift_Del p.P83Rfs*5 0.37 TCGA-BR-4362-01 6 79655139 79655139 C T PHIP Missense_Mutation p.G1569D 0.46 tolerated_low_confidence(0.54) benign(0.036) TCGA-BR-4362-01 6 83891504 83891504 A G PGM3 Silent p.N274N 0.06 TCGA-BR-4362-01 6 87965854 87965854 A - ZNF292 Frame_Shift_Del p.V838Cfs*20 0.22 TCGA-BR-4362-01 6 88331140 88331142 AAG - ORC3 In_Frame_Del p.R354del 0.19 TCGA-BR-4362-01 6 89888745 89888745 G A GABRR1 Missense_Mutation p.A395V 0.41 tolerated(0.16) benign(0.001) TCGA-BR-4362-01 6 90366426 90366426 T - MDN1 Frame_Shift_Del p.N5093Tfs*29 0.25 TCGA-BR-4362-01 6 90572134 90572134 G A CASP8AP2 RNA 0.40 TCGA-BR-4362-01 6 91226170 91226170 A - MAP3K7 3'UTR 0.39 TCGA-BR-4362-01 6 96053641 96053641 C T MANEA Missense_Mutation p.A250V 0.13 deleterious(0) probably_damaging(0.988) TCGA-BR-4362-01 6 96974275 96974275 T C UFL1 Silent p.C143C 0.50 TCGA-BR-4362-01 6 99284028 99284028 G - POU3F2 Frame_Shift_Del p.S429Vfs*60 0.25 TCGA-BR-4362-01 7 100279802 100279802 A G GIGYF1 Missense_Mutation p.Y940H 0.05 deleterious(0) probably_damaging(0.966) TCGA-BR-4362-01 7 100350272 100350272 A G ZAN Silent p.E848E 0.17 TCGA-BR-4362-01 7 100366269 100366269 G A ZAN Missense_Mutation p.R1693H 0.26 unknown(0) TCGA-BR-4362-01 7 100491627 100491627 C T ACHE Missense_Mutation p.R76H 0.20 deleterious(0.02) possibly_damaging(0.84) TCGA-BR-4362-01 7 100552298 100552300 CTC - MUC3A In_Frame_Del p.P352del 0.23 TCGA-BR-4362-01 7 100841524 100841524 A T MOGAT3 Missense_Mutation p.C206S 0.05 tolerated(0.38) benign(0.06) TCGA-BR-4362-01 7 101838799 101838799 C - CUX1 Frame_Shift_Del p.L392Wfs*26 0.26 TCGA-BR-4362-01 7 101844765 101844765 C T CUX1 Nonsense_Mutation p.Q741* 0.22 TCGA-BR-4362-01 7 102967090 102967090 T A DNAJC2 Missense_Mutation p.N158Y 0.08 deleterious(0) possibly_damaging(0.905) TCGA-BR-4362-01 7 105148864 105148864 T - PUS7 Frame_Shift_Del p.K32Nfs*9 0.21 TCGA-BR-4362-01 7 105205714 105205714 T - EFCAB10 3'UTR 0.20 TCGA-BR-4362-01 7 106508571 106508571 G A PIK3CG Missense_Mutation p.A189T 0.28 tolerated(0.56) benign(0.002) TCGA-BR-4362-01 7 106800140 106800140 T - PRKAR2B 3'UTR 0.23 TCGA-BR-4362-01 7 107216881 107216881 A G DUS4L Missense_Mutation p.T184A 0.11 deleterious(0.03) benign(0.019) TCGA-BR-4362-01 7 107234461 107234461 C T BCAP29 Silent p.S85S 0.20 TCGA-BR-4362-01 7 107692600 107692603 AAGT - LAMB4 Frame_Shift_Del p.L1286Kfs*60 0.20 TCGA-BR-4362-01 7 110763303 110763303 G A LRRN3 Missense_Mutation p.A159T 0.04 deleterious(0) probably_damaging(1) TCGA-BR-4362-01 7 112108038 112108039 - T IFRD1 Frame_Shift_Ins p.Y306Lfs*2 0.29 TCGA-BR-4362-01 7 112423777 112423777 C T TMEM168 Silent p.A368A 0.19 TCGA-BR-4362-01 7 113519686 113519686 T G PPP1R3A Missense_Mutation p.R487S 0.15 tolerated(0.21) benign(0.01) TCGA-BR-4362-01 7 11514158 11514158 T G THSD7A Missense_Mutation p.E685D 0.23 deleterious(0) probably_damaging(0.971) TCGA-BR-4362-01 7 120979236 120979236 G A WNT16 Missense_Mutation p.R312H 0.16 deleterious(0.02) probably_damaging(0.993) TCGA-BR-4362-01 7 124404743 124404743 C T GPR37 Silent p.P96P 0.30 TCGA-BR-4362-01 7 127255557 127255557 C - PAX4 Frame_Shift_Del p.L7Sfs*3 0.36 TCGA-BR-4362-01 7 127255675 127255675 T G PAX4 5'UTR 0.23 TCGA-BR-4362-01 7 127669622 127669622 C T LRRC4 Missense_Mutation p.A358T 0.15 tolerated(0.16) benign(0.074) TCGA-BR-4362-01 7 127729706 127729706 A G SND1 Missense_Mutation p.M862V 0.17 tolerated(0.08) benign(0.01) TCGA-BR-4362-01 7 128597313 128597313 C T TNPO3 Missense_Mutation p.R923Q 0.24 deleterious(0.04) probably_damaging(0.993) TCGA-BR-4362-01 7 131859616 131859616 G A PLXNA4 Missense_Mutation p.P1313L 0.17 deleterious(0) probably_damaging(1) TCGA-BR-4362-01 7 131895837 131895837 C T PLXNA4 Silent p.T721T 0.27 TCGA-BR-4362-01 7 133580444 133580444 C T EXOC4 Silent p.C609C 0.17 TCGA-BR-4362-01 7 134132069 134132069 C T AKR1B1 Missense_Mutation p.R269H 0.16 tolerated(0.18) benign(0.065) TCGA-BR-4362-01 7 134132123 134132123 C T AKR1B1 Missense_Mutation p.R251Q 0.17 deleterious(0.04) probably_damaging(0.952) TCGA-BR-4362-01 7 134136454 134136454 A G AKR1B1 Missense_Mutation p.Y40H 0.09 deleterious(0) probably_damaging(0.999) TCGA-BR-4362-01 7 134871807 134871808 - T WDR91 Frame_Shift_Ins p.V666Sfs*10 0.24 TCGA-BR-4362-01 7 137028346 137028347 CT - PTN 5'UTR 0.26 TCGA-BR-4362-01 7 138546182 138546182 G A KIAA1549 Silent p.A1650A 0.15 TCGA-BR-4362-01 7 138936727 138936727 A G UBN2 Missense_Mutation p.K196R 0.16 tolerated(0.12) benign(0.001) TCGA-BR-4362-01 7 138944059 138944059 G A UBN2 Missense_Mutation p.R283Q 0.09 deleterious(0.01) benign(0.163) TCGA-BR-4362-01 7 139167663 139167663 G A KLRG2 Silent p.D242D 0.27 TCGA-BR-4362-01 7 139416737 139416737 T - HIPK2 Frame_Shift_Del p.I33* 0.16 TCGA-BR-4362-01 7 140227168 140227168 C T DENND2A Missense_Mutation p.G819R 0.27 deleterious(0) probably_damaging(0.997) TCGA-BR-4362-01 7 140380868 140380868 G A ADCK2 Silent p.Q412Q 0.28 TCGA-BR-4362-01 7 142119822 142119822 T C TRBV7-7 Silent p.L115L 0.09 TCGA-BR-4362-01 7 142880774 142880774 G T TAS2R39 Missense_Mutation p.S88I 0.04 tolerated(0.61) benign(0.023) TCGA-BR-4362-01 7 143053849 143053849 C T FAM131B Missense_Mutation p.A293T 0.23 tolerated(0.55) benign(0.039) TCGA-BR-4362-01 7 143053878 143053878 C - FAM131B Frame_Shift_Del p.G283Efs*9 0.26 TCGA-BR-4362-01 7 143807240 143807240 G A OR2A2 Missense_Mutation p.A189T 0.12 tolerated(0.1) benign(0.212) TCGA-BR-4362-01 7 148909543 148909543 T A ZNF282 Missense_Mutation p.I349N 0.25 deleterious(0) possibly_damaging(0.897) TCGA-BR-4362-01 7 149423093 149423093 C T KRBA1 Silent p.T472T 0.35 TCGA-BR-4362-01 7 150771788 150771788 G A SLC4A2 Silent p.S969S 0.20 TCGA-BR-4362-01 7 150774091 150774091 C T FASTK Missense_Mutation p.R484H 0.24 deleterious(0.05) possibly_damaging(0.734) TCGA-BR-4362-01 7 151810452 151810452 G A GALNT11 Missense_Mutation p.R401Q 0.21 deleterious(0) probably_damaging(0.999) TCGA-BR-4362-01 7 152139842 152139842 A C AC005631.1 3'Flank 0.16 TCGA-BR-4362-01 7 152345760 152345760 A - XRCC2 Frame_Shift_Del p.F270Lfs*27 0.15 TCGA-BR-4362-01 7 1535897 1535897 G A INTS1 Missense_Mutation p.R536C 0.29 deleterious(0) probably_damaging(0.995) TCGA-BR-4362-01 7 1539893 1539893 G A INTS1 Silent p.R153R 0.40 TCGA-BR-4362-01 7 156520652 156520652 T G LMBR1 Missense_Mutation p.D322A 0.14 deleterious(0.04) probably_damaging(1) TCGA-BR-4362-01 7 156742954 156742955 - T NOM1 Frame_Shift_Ins p.L176Ffs*42 0.30 TCGA-BR-4362-01 7 157985114 157985114 G A PTPRN2 Nonsense_Mutation p.R152* 0.32 TCGA-BR-4362-01 7 158486107 158486107 A G NCAPG2 Missense_Mutation p.L54P 0.05 deleterious(0) probably_damaging(0.999) TCGA-BR-4362-01 7 158531742 158531742 T C ESYT2 Missense_Mutation p.K774E 0.13 tolerated(0.09) possibly_damaging(0.471) TCGA-BR-4362-01 7 158695164 158695164 A - WDR60 Frame_Shift_Del p.K414Rfs*22 0.26 TCGA-BR-4362-01 7 17374530 17374530 T C AHR Missense_Mutation p.Y310H 0.17 deleterious(0) probably_damaging(0.995) TCGA-BR-4362-01 7 20198704 20198704 A G MACC1 Missense_Mutation p.L427P 0.11 tolerated(0.16) probably_damaging(0.999) TCGA-BR-4362-01 7 21894039 21894039 A - DNAH11 Frame_Shift_Del p.I3732Sfs*9 0.17 TCGA-BR-4362-01 7 22197474 22197474 T - RAPGEF5 Frame_Shift_Del p.K366Rfs*22 0.25 TCGA-BR-4362-01 7 2979408 2979408 T G CARD11 Missense_Mutation p.N280T 0.20 deleterious(0.02) benign(0.005) TCGA-BR-4362-01 7 30671954 30671954 C T GARS Silent p.G665G 0.26 TCGA-BR-4362-01 7 33545142 33545142 A C BBS9 Missense_Mutation p.K728T 0.13 tolerated(0.13) benign(0.12) TCGA-BR-4362-01 7 36194770 36194770 C T EEPD1 Silent p.P279P 0.09 TCGA-BR-4362-01 7 36895088 36895088 T - ELMO1 3'UTR 0.18 TCGA-BR-4362-01 7 37264616 37264616 T G ELMO1 Missense_Mutation p.K190T 0.23 tolerated(0.6) possibly_damaging(0.665) TCGA-BR-4362-01 7 38305159 38305159 A T TRGC1 Missense_Mutation p.V41D 0.10 deleterious(0.03) possibly_damaging(0.508) TCGA-BR-4362-01 7 38505777 38505777 G A AMPH Missense_Mutation p.A221V 0.22 deleterious(0.01) possibly_damaging(0.875) TCGA-BR-4362-01 7 38725116 38725116 G - FAM183B 3'UTR 0.30 TCGA-BR-4362-01 7 3991409 3991409 T A SDK1 Missense_Mutation p.I336N 0.09 deleterious(0) possibly_damaging(0.675) TCGA-BR-4362-01 7 40900046 40900046 G A SUGCT Missense_Mutation p.A462T 0.28 tolerated(0.44) benign(0.006) TCGA-BR-4362-01 7 42005569 42005569 C T GLI3 Silent p.A1034A 0.31 TCGA-BR-4362-01 7 42007444 42007444 C T GLI3 Silent p.G727G 0.14 TCGA-BR-4362-01 7 4213858 4213858 C A SDK1 Missense_Mutation p.P1602Q 0.17 deleterious(0) probably_damaging(0.999) TCGA-BR-4362-01 7 44105024 44105024 G A PGAM2 Silent p.T35T 0.20 TCGA-BR-4362-01 7 44553055 44553055 C T NPC1L1 Silent p.R1357R 0.17 TCGA-BR-4362-01 7 44664027 44664027 G A OGDH Missense_Mutation p.A29T 0.25 tolerated(0.32) benign(0.103) TCGA-BR-4362-01 7 44715743 44715743 A - OGDH Frame_Shift_Del p.K402Rfs*67 0.14 TCGA-BR-4362-01 7 45216981 45216981 C T RAMP3 Silent p.F44F 0.20 TCGA-BR-4362-01 7 47385797 47385797 C T TNS3 Silent p.A813A 0.15 TCGA-BR-4362-01 7 47409129 47409129 G - TNS3 Frame_Shift_Del p.Q372Rfs*46 0.13 TCGA-BR-4362-01 7 48682920 48682920 T C ABCA13 Silent p.C4958C 0.19 TCGA-BR-4362-01 7 51096403 51096403 G A COBL Missense_Mutation p.P797L 0.13 tolerated(0.13) possibly_damaging(0.643) TCGA-BR-4362-01 7 5267842 5267842 G A WIPI2 Missense_Mutation p.R374Q 0.27 tolerated(0.16) benign(0.009) TCGA-BR-4362-01 7 55492954 55492956 AGG - LANCL2 In_Frame_Del p.E341del 0.26 TCGA-BR-4362-01 7 5632671 5632671 C T FSCN1 Missense_Mutation p.A35V 0.25 deleterious(0) probably_damaging(0.999) TCGA-BR-4362-01 7 57188853 57188853 C T ZNF479 Missense_Mutation p.R90H 0.08 tolerated(0.06) benign(0) TCGA-BR-4362-01 7 6189801 6189801 C T USP42 Silent p.N658N 0.16 TCGA-BR-4362-01 7 64275419 64275419 T C ZNF138 Silent p.L43L 0.25 TCGA-BR-4362-01 7 64291954 64291954 A - ZNF138 Frame_Shift_Del p.S87Vfs*19 0.17 TCGA-BR-4362-01 7 64863267 64863267 T - ZNF92 Frame_Shift_Del p.F81Lfs*11 0.24 TCGA-BR-4362-01 7 69064858 69064858 G A AUTS2 Silent p.P73P 0.30 TCGA-BR-4362-01 7 70254984 70254984 G A AUTS2 Missense_Mutation p.A928T 0.12 tolerated(0.64) benign(0.002) TCGA-BR-4362-01 7 72722714 72722714 A G NSUN5 Missense_Mutation p.V25A 0.19 deleterious(0) possibly_damaging(0.844) TCGA-BR-4362-01 7 73107983 73107983 C T WBSCR22 Missense_Mutation p.S209L 0.05 tolerated(0.07) benign(0.315) TCGA-BR-4362-01 7 73535232 73535232 G A LIMK1 Missense_Mutation p.R545Q 0.24 tolerated(0.19) probably_damaging(0.976) TCGA-BR-4362-01 7 73954296 73954296 C T GTF2IRD1 Missense_Mutation p.T571I 0.23 deleterious(0.01) benign(0.078) TCGA-BR-4362-01 7 74303853 74303853 G - STAG3L2 RNA 0.22 TCGA-BR-4362-01 7 75186991 75186991 C T HIP1 Silent p.S516S 0.19 TCGA-BR-4362-01 7 75608819 75608819 G A POR Silent p.E96E 0.24 TCGA-BR-4362-01 7 75625886 75625886 T - STYXL1 Frame_Shift_Del p.N281Tfs*10 0.16 TCGA-BR-4362-01 7 76019658 76019658 G A SRCRB4D Silent p.C482C 0.15 TCGA-BR-4362-01 7 77885613 77885613 G A MAGI2 Missense_Mutation p.P565L 0.17 deleterious(0.03) benign(0.413) TCGA-BR-4362-01 7 81340814 81340814 G A HGF Missense_Mutation p.T476I 0.55 tolerated(0.3) benign(0.081) TCGA-BR-4362-01 7 82581873 82581873 G A PCLO Missense_Mutation p.T2799I 0.17 unknown(0) TCGA-BR-4362-01 7 82763950 82763950 C T PCLO Silent p.Q972Q 0.20 TCGA-BR-4362-01 7 82764620 82764620 A C PCLO Missense_Mutation p.V749G 0.13 unknown(0) TCGA-BR-4362-01 7 82996790 82996790 T C SEMA3E 3'UTR 0.24 TCGA-BR-4362-01 7 86468223 86468223 C T GRM3 Nonsense_Mutation p.R465* 0.19 TCGA-BR-4362-01 7 86991046 86991046 A - CROT Frame_Shift_Del p.V172Cfs*11 0.21 TCGA-BR-4362-01 7 87815942 87815942 A G ADAM22 Intron 0.11 TCGA-BR-4362-01 7 88956722 88956722 A C ZNF804B Missense_Mutation p.E105A 0.22 deleterious(0) probably_damaging(0.998) TCGA-BR-4362-01 7 892561 892561 C T SUN1 Missense_Mutation p.T342M 0.17 deleterious(0.04) benign(0.099) TCGA-BR-4362-01 7 90014223 90014224 - A GTPBP10 Frame_Shift_Ins p.N309Kfs*37 0.18 TCGA-BR-4362-01 7 90041970 90041970 T C CLDN12 5'UTR 0.12 TCGA-BR-4362-01 7 90708770 90708770 A - CDK14 Frame_Shift_Del p.N360Tfs*12 0.22 TCGA-BR-4362-01 7 92826782 92826814 TGTAATTTTAACCTACCTTTGTAGGGTTGATAT GTAATTTTAACCTACCTTTGTAGGGTTGATA HEPACAM2 Splice_Site p.X374_splice 0.12 TCGA-BR-4362-01 7 92826814 92826814 T - HEPACAM2 Frame_Shift_Del p.K374Nfs*8 0.19 TCGA-BR-4362-01 7 93055810 93055810 G A CALCR Missense_Mutation p.A462V 0.22 tolerated(0.46) benign(0.016) TCGA-BR-4362-01 7 938896 938896 G A ADAP1 Silent p.D290D 0.22 TCGA-BR-4362-01 7 94991695 94991695 A G PON3 Silent p.P295P 0.11 TCGA-BR-4362-01 7 98649829 98649829 G A SMURF1 Silent p.Y240Y 0.20 TCGA-BR-4362-01 7 99079810 99079810 T C ZNF789 Intron 0.17 TCGA-BR-4362-01 7 99474202 99474203 - C OR2AE1 Frame_Shift_Ins p.A152Gfs*29 0.16 TCGA-BR-4362-01 7 99621904 99621904 G A ZKSCAN1 Missense_Mutation p.R185Q 0.19 tolerated(0.63) benign(0.002) TCGA-BR-4362-01 7 99710462 99710462 A G TAF6 Missense_Mutation p.L215P 0.18 deleterious(0.05) possibly_damaging(0.687) TCGA-BR-4362-01 8 100147927 100147927 G A VPS13B Missense_Mutation p.R510H 0.19 deleterious(0.02) benign(0) TCGA-BR-4362-01 8 100779005 100779005 C T VPS13B Missense_Mutation p.P2377S 0.18 deleterious(0.01) possibly_damaging(0.857) TCGA-BR-4362-01 8 101721808 101721808 T C PABPC1 Missense_Mutation p.Q375R 0.04 tolerated(0.46) benign(0.004) TCGA-BR-4362-01 8 10383222 10383222 C T PRSS55 Missense_Mutation p.P43S 0.25 tolerated(0.95) benign(0.002) TCGA-BR-4362-01 8 104394834 104394834 T C CTHRC1 3'UTR 0.05 TCGA-BR-4362-01 8 104922623 104922624 - A RIMS2 Intron 0.22 TCGA-BR-4362-01 8 104922742 104922742 T G RIMS2 Intron 0.10 TCGA-BR-4362-01 8 109214135 109214135 A G EIF3E Silent p.T439T 0.12 TCGA-BR-4362-01 8 110099786 110099786 G A TRHR Silent p.Q15Q 0.26 TCGA-BR-4362-01 8 110587852 110587852 A G SYBU Silent p.A425A 0.14 TCGA-BR-4362-01 8 113694851 113694851 C T CSMD3 Missense_Mutation p.E833K 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-BR-4362-01 8 116616692 116616692 T G TRPS1 Missense_Mutation p.S502R 0.22 tolerated_low_confidence(0.92) benign(0.1) TCGA-BR-4362-01 8 116616856 116616856 T C TRPS1 Missense_Mutation p.Y447C 0.13 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-BR-4362-01 8 117859879 117859879 G A RAD21 Nonsense_Mutation p.R586* 0.19 TCGA-BR-4362-01 8 120430323 120430323 C T NOV Silent p.F112F 0.25 TCGA-BR-4362-01 8 121259946 121259946 C A COL14A1 Silent p.G858G 0.14 TCGA-BR-4362-01 8 126015640 126015640 T C SQLE Missense_Mutation p.Y172H 0.04 deleterious(0.03) possibly_damaging(0.664) TCGA-BR-4362-01 8 126369982 126369985 AAGT - NSMCE2 Frame_Shift_Del p.K183Sfs*14 0.28 TCGA-BR-4362-01 8 12948849 12948849 G C DLC1 Missense_Mutation p.A1278G 0.10 tolerated(0.06) benign(0.245) TCGA-BR-4362-01 8 133826909 133826909 A - PHF20L1 Frame_Shift_Del p.N322Mfs*42 0.25 TCGA-BR-4362-01 8 133881992 133881992 C T TG Silent p.N65N 0.21 TCGA-BR-4362-01 8 134225358 134225358 C T WISP1 Silent p.R107R 0.20 TCGA-BR-4362-01 8 139833608 139833608 G A COL22A1 Missense_Mutation p.A339V 0.04 unknown(0) TCGA-BR-4362-01 8 139845316 139845316 G A COL22A1 Missense_Mutation p.R271W 0.14 unknown(0) TCGA-BR-4362-01 8 143833859 143833859 G A LYPD2 Missense_Mutation p.T4M 0.15 tolerated(0.11) benign(0.015) TCGA-BR-4362-01 8 144403476 144403476 G A TOP1MT Silent p.H347H 0.23 TCGA-BR-4362-01 8 144463474 144463474 G A RHPN1 Missense_Mutation p.R483H 0.20 tolerated(0.05) benign(0.004) TCGA-BR-4362-01 8 144523150 144523150 G A ZC3H3 Silent p.S816S 0.14 TCGA-BR-4362-01 8 144732671 144732671 C T ZNF623 Missense_Mutation p.A210V 0.20 tolerated(0.06) benign(0.003) TCGA-BR-4362-01 8 144803497 144803497 G A MAPK15 Missense_Mutation p.D374N 0.18 tolerated(0.55) benign(0) TCGA-BR-4362-01 8 144803823 144803823 C - MAPK15 Frame_Shift_Del p.L439* 0.28 TCGA-BR-4362-01 8 144812314 144812314 C T FAM83H Missense_Mutation p.A147T 0.35 deleterious(0) probably_damaging(0.974) TCGA-BR-4362-01 8 144940592 144940592 C T EPPK1 Missense_Mutation p.R2277H 0.11 benign(0.01) TCGA-BR-4362-01 8 145057410 145057410 G A PARP10 Missense_Mutation p.R783C 0.17 deleterious(0.03) benign(0.138) TCGA-BR-4362-01 8 145095784 145095784 C - SPATC1 Frame_Shift_Del p.H363Ifs*53 0.31 TCGA-BR-4362-01 8 145111995 145111995 C A OPLAH Missense_Mutation p.G521V 0.33 deleterious(0) probably_damaging(1) TCGA-BR-4362-01 8 145535505 145535505 C T HSF1 Silent p.G281G 0.22 TCGA-BR-4362-01 8 145579704 145579704 T C FBXL6 Missense_Mutation p.S466G 0.09 tolerated(1) benign(0.001) TCGA-BR-4362-01 8 145608327 145608327 G A ADCK5 Silent p.A54A 0.30 TCGA-BR-4362-01 8 145623932 145623932 G A CPSF1 Missense_Mutation p.R579W 0.24 deleterious(0) probably_damaging(0.999) TCGA-BR-4362-01 8 145662159 145662159 A G TONSL Missense_Mutation p.V624A 0.11 deleterious(0.02) possibly_damaging(0.453) TCGA-BR-4362-01 8 145947031 145947031 A - ZNF251 Frame_Shift_Del p.*672N 0.21 TCGA-BR-4362-01 8 16850819 16850819 A C FGF20 Missense_Mutation p.L133R 0.13 deleterious(0) probably_damaging(0.958) TCGA-BR-4362-01 8 17157580 17157580 G A MTMR7 Missense_Mutation p.R592W 0.23 deleterious(0.03) probably_damaging(0.993) TCGA-BR-4362-01 8 20112401 20112401 A T LZTS1 Missense_Mutation p.F98I 0.12 tolerated(0.4) probably_damaging(0.989) TCGA-BR-4362-01 8 21926552 21926552 C - DMTN Frame_Shift_Del p.P94Hfs*137 0.36 TCGA-BR-4362-01 8 21926994 21926994 C - DMTN Frame_Shift_Del p.R122Gfs*109 0.17 TCGA-BR-4362-01 8 24773231 24773231 C T NEFM Silent p.I398I 0.22 TCGA-BR-4362-01 8 25158099 25158099 T C DOCK5 Missense_Mutation p.Y258H 0.20 deleterious(0.02) possibly_damaging(0.845) TCGA-BR-4362-01 8 25902252 25902252 C T EBF2 Missense_Mutation p.A42T 0.17 tolerated_low_confidence(0.06) probably_damaging(0.937) TCGA-BR-4362-01 8 27466513 27466514 - T CLU Frame_Shift_Ins p.T63Nfs*25 0.20 TCGA-BR-4362-01 8 27657160 27657160 G T ESCO2 Missense_Mutation p.G534W 0.24 deleterious(0) probably_damaging(1) TCGA-BR-4362-01 8 27823980 27823980 C - SCARA5 Frame_Shift_Del p.L65Sfs*7 0.21 TCGA-BR-4362-01 8 28013468 28013468 A G ELP3 Silent p.P370P 0.13 TCGA-BR-4362-01 8 2808696 2808696 T C CSMD1 Missense_Mutation p.T3381A 0.09 possibly_damaging(0.793) TCGA-BR-4362-01 8 28575417 28575417 T C EXTL3 Missense_Mutation p.F614S 0.21 tolerated(0.11) benign(0.019) TCGA-BR-4362-01 8 3200878 3200878 A G CSMD1 Missense_Mutation p.L1190P 0.14 probably_damaging(0.967) TCGA-BR-4362-01 8 3216843 3216843 A G CSMD1 Silent p.C1045C 0.26 TCGA-BR-4362-01 8 38275753 38275753 G A FGFR1 Missense_Mutation p.R506W 0.18 deleterious(0) probably_damaging(0.947) TCGA-BR-4362-01 8 41399516 41399516 C T GINS4 Silent p.Y194Y 0.22 TCGA-BR-4362-01 8 41655118 41655118 C A ANK1 Intron 0.33 TCGA-BR-4362-01 8 42611479 42611479 A G CHRNA6 Missense_Mutation p.V288A 0.19 deleterious(0) probably_damaging(1) TCGA-BR-4362-01 8 48846583 48846583 G T PRKDC Missense_Mutation p.P522H 0.20 probably_damaging(0.944) TCGA-BR-4362-01 8 49647703 49647703 C T EFCAB1 Missense_Mutation p.R3H 0.23 deleterious(0) probably_damaging(0.977) TCGA-BR-4362-01 8 51449331 51449331 C T SNTG1 Missense_Mutation p.R215C 0.22 deleterious(0.01) probably_damaging(0.932) TCGA-BR-4362-01 8 52366130 52366130 C A PXDNL Missense_Mutation p.A400S 0.18 deleterious(0) probably_damaging(0.996) TCGA-BR-4362-01 8 53568877 53568877 T - RB1CC1 Frame_Shift_Del p.N1171Tfs*2 0.17 TCGA-BR-4362-01 8 53852727 53852727 C T NPBWR1 Missense_Mutation p.T87M 0.29 tolerated(0.07) probably_damaging(0.993) TCGA-BR-4362-01 8 56737360 56737360 A G TGS1 3'UTR 0.10 TCGA-BR-4362-01 8 57026447 57026447 G A MOS Missense_Mutation p.A32V 0.16 tolerated(0.1) benign(0.14) TCGA-BR-4362-01 8 59502106 59502106 G A NSMAF Missense_Mutation p.R737C 0.21 tolerated(0.2) benign(0.013) TCGA-BR-4362-01 8 61736543 61736543 A G CHD7 Missense_Mutation p.K1116E 0.14 probably_damaging(0.996) TCGA-BR-4362-01 8 61764728 61764728 G A CHD7 Missense_Mutation p.R1939Q 0.22 possibly_damaging(0.637) TCGA-BR-4362-01 8 6302587 6302587 T C MCPH1 Silent p.S448S 0.17 TCGA-BR-4362-01 8 63973933 63973933 C A TTPA Missense_Mutation p.D239Y 0.15 deleterious(0) benign(0.286) TCGA-BR-4362-01 8 65493774 65493774 G A BHLHE22 Missense_Mutation p.G143S 0.25 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-BR-4362-01 8 68204282 68204282 T C ARFGEF1 Missense_Mutation p.H239R 0.13 tolerated(0.52) benign(0.016) TCGA-BR-4362-01 8 69005938 69005938 T C PREX2 Silent p.A783A 0.16 TCGA-BR-4362-01 8 69445431 69445431 A - C8orf34 Intron 0.26 TCGA-BR-4362-01 8 72968010 72968011 - C TRPA1 Frame_Shift_Ins p.G427Wfs*5 0.13 TCGA-BR-4362-01 8 72975152 72975152 A G TRPA1 Missense_Mutation p.L230S 0.07 tolerated(0.54) benign(0.001) TCGA-BR-4362-01 8 72984094 72984094 A - TRPA1 Frame_Shift_Del p.F40Lfs*17 0.22 TCGA-BR-4362-01 8 74525998 74525998 C T STAU2 Missense_Mutation p.R291H 0.15 deleterious(0) probably_damaging(0.971) TCGA-BR-4362-01 8 8185359 8185359 T - SGK223 Frame_Shift_Del p.K978Rfs*15 0.16 TCGA-BR-4362-01 8 81897572 81897572 G A PAG1 Silent p.Y105Y 0.18 TCGA-BR-4362-01 8 82736084 82736084 T C SNX16 Missense_Mutation p.Q185R 0.18 tolerated(0.24) benign(0.033) TCGA-BR-4362-01 8 87242135 87242135 A - SLC7A13 Frame_Shift_Del p.S126Afs*20 0.30 TCGA-BR-4362-01 8 89086858 89086858 G A MMP16 Silent p.S399S 0.18 TCGA-BR-4362-01 8 91029419 91029419 C A DECR1 Missense_Mutation p.P46H 0.21 deleterious(0) possibly_damaging(0.875) TCGA-BR-4362-01 8 92008941 92008941 G A TMEM55A Missense_Mutation p.R191C 0.19 deleterious(0) probably_damaging(0.995) TCGA-BR-4362-01 8 92020972 92020972 T - TMEM55A Frame_Shift_Del p.I180Sfs*21 0.24 TCGA-BR-4362-01 8 95523361 95523361 A - KIAA1429 Intron 0.15 TCGA-BR-4362-01 8 95905168 95905168 C - CCNE2 Frame_Shift_Del p.I66Sfs*14 0.23 TCGA-BR-4362-01 9 101706239 101706239 A C COL15A1 5'UTR 0.16 TCGA-BR-4362-01 9 102780583 102780583 T - ERP44 Frame_Shift_Del p.K200Nfs*10 0.24 TCGA-BR-4362-01 9 104130597 104130598 - C BAAT Frame_Shift_Ins p.L159Sfs*7 0.21 TCGA-BR-4362-01 9 104160781 104160781 A G MRPL50 Splice_Site p.X31_splice 0.24 TCGA-BR-4362-01 9 109746489 109746489 A C ZNF462 Missense_Mutation p.E2285D 0.11 probably_damaging(0.986) TCGA-BR-4362-01 9 110081036 110081036 C T RAD23B Missense_Mutation p.T186M 0.22 tolerated(0.21) possibly_damaging(0.699) TCGA-BR-4362-01 9 111617896 111617896 C T ACTL7B Silent p.T105T 0.31 TCGA-BR-4362-01 9 111625773 111625773 G T ACTL7A Missense_Mutation p.V391L 0.22 tolerated(0.05) possibly_damaging(0.779) TCGA-BR-4362-01 9 113431142 113431142 G A MUSK 5'UTR 0.22 TCGA-BR-4362-01 9 113637698 113637698 G A LPAR1 3'UTR 0.19 TCGA-BR-4362-01 9 114490015 114490016 - T C9orf84 Frame_Shift_Ins p.Q514Tfs*4 0.19 TCGA-BR-4362-01 9 115166397 115166397 A G HSDL2 Missense_Mutation p.H47R 0.06 deleterious(0.01) possibly_damaging(0.873) TCGA-BR-4362-01 9 115759687 115759687 T G ZNF883 RNA 0.21 TCGA-BR-4362-01 9 117062942 117062942 G C COL27A1 Missense_Mutation p.G1559A 0.24 unknown(0) TCGA-BR-4362-01 9 117666180 117666180 C T TNFSF8 3'UTR 0.26 TCGA-BR-4362-01 9 118950337 118950337 C G PAPPA Missense_Mutation p.C440W 0.24 deleterious(0) possibly_damaging(0.892) TCGA-BR-4362-01 9 119413813 119413813 T C ASTN2 Silent p.T971T 0.10 TCGA-BR-4362-01 9 119461051 119461051 C T TRIM32 Missense_Mutation p.R344W 0.25 deleterious(0.02) possibly_damaging(0.849) TCGA-BR-4362-01 9 121929568 121929568 G A BRINP1 Missense_Mutation p.L694F 0.04 deleterious(0.01) probably_damaging(0.969) TCGA-BR-4362-01 9 121971057 121971057 T C BRINP1 Missense_Mutation p.K362R 0.05 tolerated(0.57) possibly_damaging(0.899) TCGA-BR-4362-01 9 123210224 123210224 C T CDK5RAP2 Missense_Mutation p.A992T 0.21 tolerated(0.15) possibly_damaging(0.811) TCGA-BR-4362-01 9 123230141 123230144 TGTT - CDK5RAP2 Frame_Shift_Del p.T701Sfs*23 0.25 TCGA-BR-4362-01 9 123794459 123794459 G A C5 Missense_Mutation p.T200M 0.22 deleterious(0.04) benign(0.054) TCGA-BR-4362-01 9 124111494 124111494 G T STOM Silent p.T143T 0.15 TCGA-BR-4362-01 9 124116898 124116898 T C STOM Silent p.Q73Q 0.06 TCGA-BR-4362-01 9 125909141 125909141 G A STRBP Missense_Mutation p.A444V 0.17 deleterious(0) possibly_damaging(0.69) TCGA-BR-4362-01 9 130280190 130280190 G T FAM129B Missense_Mutation p.P207H 0.16 deleterious(0.03) probably_damaging(0.979) TCGA-BR-4362-01 9 130587555 130587555 G - ENG Frame_Shift_Del p.Y258Tfs*101 0.19 TCGA-BR-4362-01 9 130630270 130630270 A G AK1 3'UTR 0.20 TCGA-BR-4362-01 9 13110649 13110649 A G MPDZ Missense_Mutation p.S1910P 0.19 deleterious(0.01) possibly_damaging(0.642) TCGA-BR-4362-01 9 131222848 131222848 G A ODF2 Intron 0.20 TCGA-BR-4362-01 9 131468079 131468079 G A PKN3 Missense_Mutation p.R111Q 0.26 tolerated(0.77) benign(0.01) TCGA-BR-4362-01 9 131857690 131857690 G - CRAT Frame_Shift_Del p.R623Gfs*47 0.22 TCGA-BR-4362-01 9 13221391 13221391 G T MPDZ Missense_Mutation p.P286T 0.20 deleterious(0) probably_damaging(1) TCGA-BR-4362-01 9 132671268 132671268 G A FNBP1 Missense_Mutation p.P399L 0.23 tolerated(0.23) benign(0.043) TCGA-BR-4362-01 9 133759579 133759579 C T ABL1 Silent p.G653G 0.21 TCGA-BR-4362-01 9 134357813 134357813 G A PRRC2B Missense_Mutation p.R1680Q 0.18 tolerated(0.35) probably_damaging(0.997) TCGA-BR-4362-01 9 134390827 134390827 C - POMT1 Frame_Shift_Del p.L421* 0.22 TCGA-BR-4362-01 9 135201742 135201742 A - SETX Frame_Shift_Del p.F1748Sfs*3 0.11 TCGA-BR-4362-01 9 135753607 135753607 G - AK8 Frame_Shift_Del p.E13Rfs*14 0.32 TCGA-BR-4362-01 9 136251429 136251429 C T C9orf96 Missense_Mutation p.A83V 0.15 tolerated(0.07) benign(0.405) TCGA-BR-4362-01 9 136328610 136328610 G A CACFD1 Missense_Mutation p.A43T 0.20 deleterious(0.05) possibly_damaging(0.454) TCGA-BR-4362-01 9 136328658 136328658 G A CACFD1 Missense_Mutation p.A59T 0.16 tolerated(0.1) benign(0.439) TCGA-BR-4362-01 9 137777737 137777737 G A FCN2 Missense_Mutation p.A185T 0.15 tolerated(0.17) benign(0.018) TCGA-BR-4362-01 9 138649027 138649027 G A KCNT1 Missense_Mutation p.R209H 0.17 tolerated(0.06) benign(0.006) TCGA-BR-4362-01 9 138712780 138712780 C G CAMSAP1 Missense_Mutation p.A1243P 0.20 tolerated(0.46) benign(0.04) TCGA-BR-4362-01 9 138847166 138847166 G A UBAC1 Silent p.I78I 0.10 TCGA-BR-4362-01 9 139305172 139305173 - G PMPCA Frame_Shift_Ins p.C20Lfs*15 0.19 TCGA-BR-4362-01 9 139390736 139390736 G - NOTCH1 Frame_Shift_Del p.S2486Rfs*103 0.20 TCGA-BR-4362-01 9 139396735 139396735 G A NOTCH1 Silent p.S1791S 0.18 TCGA-BR-4362-01 9 139616505 139616505 G T FAM69B Intron 0.20 TCGA-BR-4362-01 9 139649870 139649870 A G LCN8 Missense_Mutation p.Y109H 0.06 deleterious(0.05) possibly_damaging(0.551) TCGA-BR-4362-01 9 139756572 139756572 G A EDF1 3'UTR 0.14 TCGA-BR-4362-01 9 139911742 139911742 A G ABCA2 Missense_Mutation p.I820T 0.17 deleterious(0) probably_damaging(0.999) TCGA-BR-4362-01 9 139912463 139912463 G A ABCA2 Silent p.Y686Y 0.10 TCGA-BR-4362-01 9 139945517 139945517 C - ENTPD2 Frame_Shift_Del p.G204Vfs*171 0.23 TCGA-BR-4362-01 9 140002104 140002104 G A MAN1B1 Missense_Mutation p.R629Q 0.25 deleterious(0.03) benign(0.011) TCGA-BR-4362-01 9 140058119 140058119 C T GRIN1 Silent p.A835A 0.18 TCGA-BR-4362-01 9 140348239 140348239 C T NSMF Missense_Mutation p.R289Q 0.33 deleterious_low_confidence(0.04) probably_damaging(0.939) TCGA-BR-4362-01 9 140611142 140611142 G A EHMT1 Silent p.A50A 0.14 TCGA-BR-4362-01 9 17484353 17484353 A - CNTLN Frame_Shift_Del p.M1308* 0.21 TCGA-BR-4362-01 9 17795624 17795624 C T SH3GL2 Silent p.G314G 0.05 TCGA-BR-4362-01 9 18928326 18928326 A G FAM154A Silent p.P383P 0.19 TCGA-BR-4362-01 9 20912931 20912931 A - FOCAD Frame_Shift_Del p.S931Afs*11 0.20 TCGA-BR-4362-01 9 21007046 21007046 T - PTPLAD2 Frame_Shift_Del p.K230Rfs*45 0.24 TCGA-BR-4362-01 9 21187210 21187210 T A IFNA4 Missense_Mutation p.K107N 0.17 tolerated(0.09) possibly_damaging(0.485) TCGA-BR-4362-01 9 21970967 21970967 G A CDKN2A Missense_Mutation p.R131C 0.16 deleterious(0) benign(0.213) TCGA-BR-4362-01 9 27206671 27206671 T C TEK Missense_Mutation p.L819P 0.06 deleterious(0) probably_damaging(0.997) TCGA-BR-4362-01 9 27229174 27229174 C T TEK Missense_Mutation p.L1107F 0.25 deleterious(0) benign(0.289) TCGA-BR-4362-01 9 27949193 27949193 T C LINGO2 Missense_Mutation p.T493A 0.16 deleterious(0) possibly_damaging(0.754) TCGA-BR-4362-01 9 33295421 33295421 C T NFX1 Silent p.H343H 0.09 TCGA-BR-4362-01 9 33318813 33318813 T C NFX1 Missense_Mutation p.L558S 0.04 tolerated(0.72) benign(0.004) TCGA-BR-4362-01 9 33466161 33466161 G A NOL6 Nonsense_Mutation p.R758* 0.19 TCGA-BR-4362-01 9 33675379 33675379 C A PTENP1 RNA 0.22 TCGA-BR-4362-01 9 33675400 33675400 G A PTENP1 RNA 0.12 TCGA-BR-4362-01 9 35065361 35065361 G A VCP Missense_Mutation p.R155C 0.13 deleterious(0.01) probably_damaging(0.941) TCGA-BR-4362-01 9 35449950 35449950 C T ATP8B5P RNA 0.13 TCGA-BR-4362-01 9 35719097 35719097 G A TLN1 Missense_Mutation p.R624C 0.17 deleterious(0) benign(0.407) TCGA-BR-4362-01 9 35869832 35869832 G A OR13J1 Silent p.C189C 0.15 TCGA-BR-4362-01 9 36369774 36369774 A G RNF38 Missense_Mutation p.L171P 0.06 deleterious(0) probably_damaging(0.999) TCGA-BR-4362-01 9 376262 376262 T C DOCK8 Missense_Mutation p.V721A 0.19 deleterious(0) possibly_damaging(0.775) TCGA-BR-4362-01 9 3829471 3829471 T G GLIS3 Missense_Mutation p.K832T 0.17 tolerated(1) benign(0) TCGA-BR-4362-01 9 5185339 5185339 C T INSL6 Silent p.P88P 0.03 TCGA-BR-4362-01 9 5467858 5467858 C T CD274 Missense_Mutation p.T290M 0.28 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BR-4362-01 9 6498070 6498070 G A UHRF2 Missense_Mutation p.R607H 0.20 deleterious(0) probably_damaging(0.998) TCGA-BR-4362-01 9 6605272 6605272 A G GLDC Silent p.T240T 0.27 TCGA-BR-4362-01 9 7013988 7013988 A G KDM4C Silent p.V723V 0.30 TCGA-BR-4362-01 9 70993145 70993145 A G PGM5 Missense_Mutation p.I98V 0.17 deleterious(0.01) possibly_damaging(0.573) TCGA-BR-4362-01 9 71836092 71836092 G A TJP2 Missense_Mutation p.R242H 0.20 tolerated(0.42) possibly_damaging(0.636) TCGA-BR-4362-01 9 73152166 73152166 G A TRPM3 Missense_Mutation p.A1276V 0.21 tolerated(0.27) benign(0.004) TCGA-BR-4362-01 9 74332975 74332975 G A TMEM2 Missense_Mutation p.A763V 0.23 deleterious(0) benign(0.13) TCGA-BR-4362-01 9 75542080 75542080 A - ALDH1A1 Frame_Shift_Del p.F152Lfs*29 0.26 TCGA-BR-4362-01 9 77300472 77300472 A G RORB Missense_Mutation p.T440A 0.05 tolerated(1) benign(0) TCGA-BR-4362-01 9 79267523 79267525 AGA - PRUNE2 In_Frame_Del p.S2811del 0.19 TCGA-BR-4362-01 9 79635851 79635851 G A FOXB2 Silent p.S427S 0.20 TCGA-BR-4362-01 9 79875050 79875051 - A VPS13A Frame_Shift_Ins p.L782Tfs*9 0.20 TCGA-BR-4362-01 9 82321726 82321726 G A TLE4 Missense_Mutation p.R283H 0.21 tolerated(0.22) possibly_damaging(0.781) TCGA-BR-4362-01 9 84225140 84225140 C T TLE1 Silent p.G442G 0.21 TCGA-BR-4362-01 9 84562558 84562558 A C RP11-383M4.6 Intron 0.14 TCGA-BR-4362-01 9 84607025 84607025 T G SPATA31D1 Missense_Mutation p.L547R 0.05 tolerated(0.45) probably_damaging(0.972) TCGA-BR-4362-01 9 90264945 90264945 C T DAPK1 Missense_Mutation p.T513M 0.12 deleterious(0) probably_damaging(0.993) TCGA-BR-4362-01 9 93375412 93375412 A G DIRAS2 3'UTR 0.25 TCGA-BR-4362-01 9 93376013 93376013 G A DIRAS2 Missense_Mutation p.R33W 0.23 deleterious(0.03) possibly_damaging(0.875) TCGA-BR-4362-01 9 93650880 93650880 C T SYK Silent p.Y602Y 0.17 TCGA-BR-4362-01 9 93978376 93978376 T C AUH Missense_Mutation p.T303A 0.20 deleterious(0.03) probably_damaging(0.941) TCGA-BR-4362-01 9 95997117 95997117 T C WNK2 Missense_Mutation p.M368T 0.06 unknown(0) TCGA-BR-4362-01 9 96320179 96320179 G T FAM120A Missense_Mutation p.S852I 0.21 tolerated(0.24) benign(0.023) TCGA-BR-4362-01 9 98728851 98728851 A G ERCC6L2 Missense_Mutation p.H663R 0.24 tolerated(0.06) benign(0.13) TCGA-BR-4362-01 9 99537116 99537116 C T ZNF510 Missense_Mutation p.R28Q 0.21 tolerated(1) benign(0) TCGA-BR-4362-01 X 100505457 100505457 G A DRP2 Missense_Mutation p.R529H 0.29 deleterious(0) probably_damaging(0.923) TCGA-BR-4362-01 X 101623517 101623517 G A NXF2B Missense_Mutation p.T220I 0.10 tolerated(0.13) benign(0.178) TCGA-BR-4362-01 X 101823513 101823513 T C NXF4 RNA 0.22 TCGA-BR-4362-01 X 102003966 102003967 - A BHLHB9 Frame_Shift_Ins p.A18Gfs*6 0.24 TCGA-BR-4362-01 X 103499192 103499192 T C ESX1 Missense_Mutation p.K50R 0.03 tolerated_low_confidence(0.16) benign(0.003) TCGA-BR-4362-01 X 106228467 106228468 - T MORC4 Frame_Shift_Ins p.M178Nfs*23 0.23 TCGA-BR-4362-01 X 107334776 107334776 G A PSMD10 5'UTR 0.26 TCGA-BR-4362-01 X 107976465 107976465 C T IRS4 Missense_Mutation p.R1037H 0.22 deleterious(0) unknown(0) TCGA-BR-4362-01 X 114141351 114141351 C T HTR2C Silent p.H250H 0.29 TCGA-BR-4362-01 X 117480540 117480540 T G WDR44 Missense_Mutation p.V25G 0.22 tolerated_low_confidence(0.36) benign(0) TCGA-BR-4362-01 X 117895240 117895240 T C IL13RA1 Silent p.H272H 0.05 TCGA-BR-4362-01 X 118676477 118676477 C A CXorf56 Missense_Mutation p.E168D 0.20 deleterious(0) possibly_damaging(0.882) TCGA-BR-4362-01 X 119742168 119742168 T G MCTS1 Silent p.T118T 0.06 TCGA-BR-4362-01 X 120181688 120181688 G A GLUD2 Silent p.R50R 0.29 TCGA-BR-4362-01 X 123517968 123517968 C T TENM1 Silent p.G2271G 0.26 TCGA-BR-4362-01 X 128599865 128599865 T C SMARCA1 Missense_Mutation p.R925G 0.26 deleterious(0) possibly_damaging(0.739) TCGA-BR-4362-01 X 129149510 129149510 C A BCORL1 Missense_Mutation p.P921H 0.29 probably_damaging(0.969) TCGA-BR-4362-01 X 129162713 129162713 T C BCORL1 Silent p.D1394D 0.18 TCGA-BR-4362-01 X 129190011 129190011 C - BCORL1 Frame_Shift_Del p.P1681Qfs*20 0.40 TCGA-BR-4362-01 X 130410036 130410036 A T IGSF1 Missense_Mutation p.V937D 0.25 deleterious(0) possibly_damaging(0.776) TCGA-BR-4362-01 X 133941656 133941656 T C FAM122C Missense_Mutation p.F10L 0.08 tolerated(1) benign(0) TCGA-BR-4362-01 X 134303672 134303672 A G CT55 Missense_Mutation p.V42A 0.11 deleterious(0.01) possibly_damaging(0.824) TCGA-BR-4362-01 X 134494771 134494771 A C ZNF449 Missense_Mutation p.S443R 0.35 tolerated(0.05) possibly_damaging(0.774) TCGA-BR-4362-01 X 135313712 135313712 G A MAP7D3 Silent p.D468D 0.41 TCGA-BR-4362-01 X 135593401 135593402 - A HTATSF1 Frame_Shift_Ins p.E502Rfs*3 0.36 TCGA-BR-4362-01 X 138698521 138698521 C T MCF2 Missense_Mutation p.E431K 0.13 deleterious(0.03) benign(0.184) TCGA-BR-4362-01 X 144905424 144905424 C T SLITRK2 Missense_Mutation p.T494M 0.20 tolerated(0.21) possibly_damaging(0.576) TCGA-BR-4362-01 X 144905693 144905693 T A SLITRK2 Missense_Mutation p.L584M 0.15 tolerated(0.23) benign(0.007) TCGA-BR-4362-01 X 145078239 145078239 C T MIR892A RNA 0.41 TCGA-BR-4362-01 X 14883542 14883542 T G FANCB Missense_Mutation p.N31H 0.04 tolerated(0.16) benign(0.006) TCGA-BR-4362-01 X 149013371 149013371 C T MAGEA8 Missense_Mutation p.R109W 0.05 tolerated(0.07) benign(0.006) TCGA-BR-4362-01 X 149931153 149931153 G A MTMR1 Missense_Mutation p.R650Q 0.14 tolerated(0.16) benign(0.022) TCGA-BR-4362-01 X 150839574 150839574 A C PASD1 Missense_Mutation p.K379T 0.43 tolerated(0.19) probably_damaging(0.943) TCGA-BR-4362-01 X 151304043 151304043 T C MAGEA10 Missense_Mutation p.Q17R 0.05 deleterious(0.02) benign(0.066) TCGA-BR-4362-01 X 152031181 152031181 C T NSDHL Silent p.G152G 0.20 TCGA-BR-4362-01 X 152613218 152613218 C T ZNF275 Missense_Mutation p.P326L 0.16 unknown(0) TCGA-BR-4362-01 X 153042691 153042691 G - PLXNB3 Frame_Shift_Del p.V1678Cfs*7 0.39 TCGA-BR-4362-01 X 153050913 153050913 T C SRPK3 Missense_Mutation p.Y548H 0.15 deleterious(0) possibly_damaging(0.727) TCGA-BR-4362-01 X 153184481 153184481 G T ARHGAP4 Silent p.A319A 0.18 TCGA-BR-4362-01 X 153184643 153184643 T C ARHGAP4 Missense_Mutation p.N299S 0.14 deleterious(0.02) benign(0.126) TCGA-BR-4362-01 X 153219884 153219884 G A HCFC1 Silent p.C1322C 0.43 TCGA-BR-4362-01 X 153278860 153278860 G A IRAK1 Nonsense_Mutation p.Q522* 0.25 TCGA-BR-4362-01 X 153524229 153524229 C T TKTL1 Missense_Mutation p.A6V 0.20 tolerated_low_confidence(0.06) unknown(0) TCGA-BR-4362-01 X 153590823 153590824 - C FLNA Frame_Shift_Ins p.A843Gfs*12 0.18 TCGA-BR-4362-01 X 153662013 153662013 A G ATP6AP1 Missense_Mutation p.K211E 0.37 deleterious(0.01) benign(0.024) TCGA-BR-4362-01 X 154088725 154088725 A - F8 Frame_Shift_Del p.Q2295Rfs*5 0.21 TCGA-BR-4362-01 X 17744772 17744772 C T NHS Missense_Mutation p.P828L 0.19 deleterious(0) probably_damaging(1) TCGA-BR-4362-01 X 17745811 17745811 T C NHS Silent p.T1174T 0.29 TCGA-BR-4362-01 X 18725801 18725801 C A PPEF1 5'UTR 0.35 TCGA-BR-4362-01 X 19560215 19560215 G - SH3KBP1 Frame_Shift_Del p.L574Cfs*39 0.24 TCGA-BR-4362-01 X 19587236 19587236 G A SH3KBP1 Missense_Mutation p.R457C 0.24 deleterious(0) benign(0.095) TCGA-BR-4362-01 X 19606847 19606847 C T SH3KBP1 Silent p.R404R 0.26 TCGA-BR-4362-01 X 20082870 20082870 G A MAP7D2 Nonsense_Mutation p.R62* 0.32 TCGA-BR-4362-01 X 21670629 21670629 C T CNKSR2 Missense_Mutation p.T1032M 0.30 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BR-4362-01 X 22291373 22291373 G A ZNF645 Missense_Mutation p.G89R 0.25 deleterious(0.02) benign(0.12) TCGA-BR-4362-01 X 23748967 23748967 G A ACOT9 Nonsense_Mutation p.R110* 0.29 TCGA-BR-4362-01 X 27765108 27765108 G A DCAF8L2 Silent p.A32A 0.18 TCGA-BR-4362-01 X 30870905 30870905 G A TAB3 Missense_Mutation p.A567V 0.27 tolerated(0.31) benign(0.049) TCGA-BR-4362-01 X 31496309 31496309 G A DMD Missense_Mutation p.R2951C 0.21 possibly_damaging(0.835) TCGA-BR-4362-01 X 3235646 3235646 C T MXRA5 Missense_Mutation p.V2026M 0.21 deleterious(0) probably_damaging(0.964) TCGA-BR-4362-01 X 34961163 34961163 G A FAM47B Missense_Mutation p.R72H 0.07 tolerated(0.24) benign(0.023) TCGA-BR-4362-01 X 34961839 34961839 G A FAM47B Silent p.P297P 0.30 TCGA-BR-4362-01 X 37028265 37028265 C - FAM47C Frame_Shift_Del p.P596Rfs*229 0.37 TCGA-BR-4362-01 X 37312611 37312611 C - PRRG1 Frame_Shift_Del p.P134Hfs*19 0.30 TCGA-BR-4362-01 X 37526606 37526606 T C LANCL3 Missense_Mutation p.C323R 0.21 deleterious(0.01) possibly_damaging(0.844) TCGA-BR-4362-01 X 37587585 37587585 A - XK Frame_Shift_Del p.K403Nfs*6 0.12 TCGA-BR-4362-01 X 38535094 38535094 G A TSPAN7 Missense_Mutation p.A193T 0.24 tolerated(0.21) benign(0.017) TCGA-BR-4362-01 X 43587520 43587520 G - MAOA Frame_Shift_Del p.G203Afs*18 0.26 TCGA-BR-4362-01 X 47045755 47045755 G A RBM10 Missense_Mutation p.R879H 0.31 deleterious(0) probably_damaging(0.998) TCGA-BR-4362-01 X 47430411 47430411 G T ARAF Missense_Mutation p.Q562H 0.25 deleterious(0) possibly_damaging(0.754) TCGA-BR-4362-01 X 47774350 47774350 A G ZNF81 Missense_Mutation p.Q102R 0.30 deleterious(0.04) benign(0.039) TCGA-BR-4362-01 X 47774500 47774500 G A ZNF81 Missense_Mutation p.R152H 0.28 tolerated(1) benign(0) TCGA-BR-4362-01 X 47917969 47917969 T C ZNF630 Missense_Mutation p.H621R 0.15 deleterious(0) benign(0.04) TCGA-BR-4362-01 X 49019249 49019249 G A MAGIX Missense_Mutation p.A8T 0.40 tolerated_low_confidence(0.44) benign(0.019) TCGA-BR-4362-01 X 49837186 49837186 A G CLCN5 Missense_Mutation p.S120G 0.23 tolerated(0.44) possibly_damaging(0.487) TCGA-BR-4362-01 X 51637833 51637833 C T MAGED1 Silent p.R52R 0.28 TCGA-BR-4362-01 X 53674333 53674333 C T HUWE1 Missense_Mutation p.R110Q 0.22 probably_damaging(0.997) TCGA-BR-4362-01 X 54470968 54470968 C T TSR2 Silent p.V187V 0.21 TCGA-BR-4362-01 X 54577458 54577458 G A GNL3L Missense_Mutation p.V280M 0.30 deleterious(0) probably_damaging(0.965) TCGA-BR-4362-01 X 54838668 54838668 G A MAGED2 Missense_Mutation p.A357T 0.17 deleterious(0.04) possibly_damaging(0.74) TCGA-BR-4362-01 X 55051231 55051231 G A ALAS2 Missense_Mutation p.S75L 0.33 tolerated(0.07) benign(0.013) TCGA-BR-4362-01 X 55757835 55757835 G A RRAGB Missense_Mutation p.R139Q 0.27 tolerated(0.07) benign(0.15) TCGA-BR-4362-01 X 57474979 57474979 G T FAAH2 Missense_Mutation p.K417N 0.24 tolerated(0.53) benign(0.348) TCGA-BR-4362-01 X 63410310 63410310 G T AMER1 Missense_Mutation p.P953T 0.21 deleterious(0.02) probably_damaging(0.999) TCGA-BR-4362-01 X 70127618 70127618 A - TEX11 5'UTR 0.22 TCGA-BR-4362-01 X 70523138 70523138 C T ITGB1BP2 Missense_Mutation p.P115L 0.30 tolerated(0.06) benign(0.014) TCGA-BR-4362-01 X 73961039 73961039 G A KIAA2022 Missense_Mutation p.T1118I 0.19 tolerated(0.22) benign(0.045) TCGA-BR-4362-01 X 77244200 77244200 A T ATP7A Nonsense_Mutation p.K195* 0.03 TCGA-BR-4362-01 X 79932589 79932589 C T BRWD3 Missense_Mutation p.S1643N 0.16 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-BR-4362-01 X 84349197 84349197 A G SATL1 Missense_Mutation p.Y605H 0.04 deleterious(0) probably_damaging(0.994) TCGA-BR-4362-01 X 84363029 84363029 T A SATL1 Missense_Mutation p.M316L 0.05 tolerated(0.11) possibly_damaging(0.65) TCGA-BR-4362-01 X 84510747 84510747 A G ZNF711 Missense_Mutation p.T188A 0.04 tolerated_low_confidence(0.27) benign(0.054) TCGA-BR-4362-01 X 99662505 99662505 G - PCDH19 Frame_Shift_Del p.P364Rfs*4 0.27 TCGA-BR-4363-01 10 102247423 102247423 T G SEC31B Missense_Mutation p.M1164L 0.28 deleterious(0.02) benign(0.027) TCGA-BR-4363-01 10 104356986 104356986 C T SUFU Silent p.P282P 0.35 TCGA-BR-4363-01 10 105362278 105362278 G A SH3PXD2A Silent p.N871N 0.31 TCGA-BR-4363-01 10 114925622 114925622 C - TCF7L2 Frame_Shift_Del p.S569Pfs*33 0.30 TCGA-BR-4363-01 10 115364629 115364629 G T NRAP Silent p.P1322P 0.29 TCGA-BR-4363-01 10 11997436 11997436 C T UPF2 Missense_Mutation p.R882Q 0.32 deleterious(0.04) benign(0.079) TCGA-BR-4363-01 10 12291660 12291660 C T CDC123 Silent p.D309D 0.37 TCGA-BR-4363-01 10 13541863 13541863 C T BEND7 Silent p.P69P 0.29 TCGA-BR-4363-01 10 14896175 14896175 G A HSPA14 Silent p.T262T 0.32 TCGA-BR-4363-01 10 17085918 17085918 G - CUBN Frame_Shift_Del p.P1246Lfs*12 0.21 TCGA-BR-4363-01 10 20290849 20290849 T C PLXDC2 Silent p.S86S 0.20 TCGA-BR-4363-01 10 29811362 29811362 G A SVIL Silent p.S1122S 0.34 TCGA-BR-4363-01 10 298390 298390 A G ZMYND11 Missense_Mutation p.T597A 0.25 tolerated(0.11) probably_damaging(0.989) TCGA-BR-4363-01 10 3155656 3155656 C T PFKP Silent p.D439D 0.41 TCGA-BR-4363-01 10 47000018 47000018 C T GPRIN2 Missense_Mutation p.R380W 0.10 deleterious(0) probably_damaging(0.984) TCGA-BR-4363-01 10 48429407 48429407 C T GDF10 Missense_Mutation p.R160H 0.19 tolerated(0.24) possibly_damaging(0.908) TCGA-BR-4363-01 10 50374941 50374941 G T C10orf128 Missense_Mutation p.L71M 0.21 deleterious(0.04) possibly_damaging(0.899) TCGA-BR-4363-01 10 52619739 52619739 T G A1CF 5'UTR 0.34 TCGA-BR-4363-01 10 62021641 62021641 C T ANK3 Silent p.A258A 0.26 TCGA-BR-4363-01 10 64136621 64136621 C T ZNF365 Silent p.D223D 0.34 TCGA-BR-4363-01 10 70525719 70525719 G A CCAR1 Silent p.P727P 0.29 TCGA-BR-4363-01 10 75877825 75877825 T C VCL Silent p.S1101S 0.35 TCGA-BR-4363-01 10 8007107 8007107 A - TAF3 Frame_Shift_Del p.D547Tfs*13 0.23 TCGA-BR-4363-01 10 85984651 85984651 C T LRIT2 Silent p.L110L 0.30 TCGA-BR-4363-01 10 88260442 88260443 - T WAPAL Frame_Shift_Ins p.N186Kfs*3 0.37 TCGA-BR-4363-01 10 890939 890939 T - LARP4B Frame_Shift_Del p.T163Hfs*47 0.29 TCGA-BR-4363-01 10 91514321 91514321 A - KIF20B Frame_Shift_Del p.M1427* 0.21 TCGA-BR-4363-01 10 93622745 93622745 G A TNKS2 Missense_Mutation p.V1164I 0.29 tolerated_low_confidence(0.36) benign(0.005) TCGA-BR-4363-01 10 94654754 94654754 A - EXOC6 Frame_Shift_Del p.K131Nfs*9 0.25 TCGA-BR-4363-01 10 98799862 98799862 C - SLIT1 Frame_Shift_Del p.G727Afs*65 0.44 TCGA-BR-4363-01 10 99683148 99683148 G A CRTAC1 Missense_Mutation p.T144M 0.39 deleterious(0.03) probably_damaging(0.945) TCGA-BR-4363-01 11 100999546 100999546 C T PGR Missense_Mutation p.A86T 0.32 tolerated_low_confidence(0.08) probably_damaging(0.989) TCGA-BR-4363-01 11 102713563 102713563 T - MMP3 Frame_Shift_Del p.I64Sfs*12 0.32 TCGA-BR-4363-01 11 111154907 111154907 G - C11orf53 Frame_Shift_Del p.K40Sfs*34 0.33 TCGA-BR-4363-01 11 113629418 113629418 A C ZW10 Missense_Mutation p.S197R 0.37 tolerated(0.16) benign(0.367) TCGA-BR-4363-01 11 11374527 11374527 C T CSNK2A3 Missense_Mutation p.R47Q 0.28 deleterious(0.01) possibly_damaging(0.513) TCGA-BR-4363-01 11 114270731 114270731 T G C11orf71 Missense_Mutation p.Q108P 0.26 deleterious_low_confidence(0) possibly_damaging(0.881) TCGA-BR-4363-01 11 117389265 117389265 G - DSCAML1 Frame_Shift_Del p.Q536Rfs*25 0.29 TCGA-BR-4363-01 11 12315408 12315408 C T MICALCL Nonsense_Mutation p.Q144* 0.31 TCGA-BR-4363-01 11 124767016 124767016 G A ROBO4 Missense_Mutation p.P71L 0.44 tolerated(1) probably_damaging(0.996) TCGA-BR-4363-01 11 125472795 125472797 CTC - STT3A In_Frame_Del p.S125del 0.33 TCGA-BR-4363-01 11 126277512 126277512 C - ST3GAL4 Frame_Shift_Del p.K110Rfs*38 0.26 TCGA-BR-4363-01 11 129724691 129724691 C T TMEM45B Missense_Mutation p.A122V 0.21 deleterious(0.01) probably_damaging(0.955) TCGA-BR-4363-01 11 18428916 18428916 G A LDHA 3'UTR 0.24 TCGA-BR-4363-01 11 212613 212613 A G RIC8A Missense_Mutation p.Q361R 0.19 tolerated(0.13) benign(0.017) TCGA-BR-4363-01 11 31812317 31812317 G - PAX6 Frame_Shift_Del p.P389Hfs*7 0.31 TCGA-BR-4363-01 11 33773099 33773099 C T FBXO3 Missense_Mutation p.G260D 0.19 tolerated(0.68) benign(0.002) TCGA-BR-4363-01 11 34485651 34485651 G T CAT Splice_Site p.X399_splice 0.35 TCGA-BR-4363-01 11 400055 400055 C - PKP3 Frame_Shift_Del p.L456Cfs*191 0.36 TCGA-BR-4363-01 11 428612 428612 C T ANO9 Missense_Mutation p.V350I 0.31 tolerated(0.18) benign(0.005) TCGA-BR-4363-01 11 45671729 45671729 C T CHST1 Missense_Mutation p.D249N 0.31 tolerated(0.17) probably_damaging(0.991) TCGA-BR-4363-01 11 45955607 45955607 G - PHF21A Frame_Shift_Del p.P652Lfs*104 0.33 TCGA-BR-4363-01 11 46842731 46842731 G A CKAP5 Missense_Mutation p.H18Y 0.33 deleterious(0) probably_damaging(0.995) TCGA-BR-4363-01 11 47440696 47440696 C - PSMC3 Frame_Shift_Del p.A394Pfs*12 0.19 TCGA-BR-4363-01 11 47599113 47599113 A G KBTBD4 Missense_Mutation p.C163R 0.22 deleterious(0) probably_damaging(1) TCGA-BR-4363-01 11 4936206 4936206 C T OR51G2 Missense_Mutation p.V230M 0.06 deleterious(0) probably_damaging(1) TCGA-BR-4363-01 11 5536466 5536466 A T UBQLNL Silent p.S402S 0.29 TCGA-BR-4363-01 11 558069 558069 G - C11orf35 Intron 0.29 TCGA-BR-4363-01 11 6261463 6261463 G A CNGA4 Missense_Mutation p.A147T 0.35 tolerated(0.17) benign(0.002) TCGA-BR-4363-01 11 65653077 65653077 T - FIBP Frame_Shift_Del p.K190Nfs*5 0.31 TCGA-BR-4363-01 11 6630785 6630785 C T ILK Silent p.C257C 0.31 TCGA-BR-4363-01 11 66407069 66407069 A T RBM4 5'UTR 0.27 TCGA-BR-4363-01 11 68747740 68747740 A G MRGPRD Missense_Mutation p.I239T 0.27 tolerated(0.06) benign(0.247) TCGA-BR-4363-01 11 69465973 69465973 G A CCND1 Missense_Mutation p.A271T 0.27 tolerated(0.59) benign(0.003) TCGA-BR-4363-01 11 69482212 69482212 G C ORAOV1 3'UTR 0.45 TCGA-BR-4363-01 11 6953704 6953704 C A ZNF215 Missense_Mutation p.S67R 0.11 tolerated(0.05) probably_damaging(0.952) TCGA-BR-4363-01 11 71948748 71948748 C - INPPL1 Frame_Shift_Del p.R1156Gfs*46 0.41 TCGA-BR-4363-01 11 74421903 74421903 G A CHRDL2 Silent p.C141C 0.33 TCGA-BR-4363-01 11 75694509 75694509 C T UVRAG Missense_Mutation p.R260W 0.33 deleterious(0) possibly_damaging(0.893) TCGA-BR-4363-01 11 75907667 75907667 C T WNT11 Missense_Mutation p.R60H 0.34 deleterious(0) probably_damaging(0.998) TCGA-BR-4363-01 11 788424 788424 C T CEND1 Silent p.P51P 0.33 TCGA-BR-4363-01 11 82877632 82877632 C T PCF11 Nonsense_Mutation p.R565* 0.29 TCGA-BR-4363-01 11 92616283 92616283 G A FAT3 Missense_Mutation p.V4221I 0.31 benign(0) TCGA-BR-4363-01 11 92702954 92702954 C T MTNR1B Silent p.G21G 0.35 TCGA-BR-4363-01 11 93494832 93494832 C T C11orf54 Missense_Mutation p.T259M 0.27 deleterious(0) probably_damaging(0.977) TCGA-BR-4363-01 11 94532688 94532688 C - AMOTL1 Frame_Shift_Del p.P112Qfs*5 0.26 TCGA-BR-4363-01 11 94922973 94922973 T C SESN3 Silent p.R165R 0.29 TCGA-BR-4363-01 12 104156095 104156095 T C STAB2 Missense_Mutation p.I2468T 0.23 tolerated(0.14) benign(0.002) TCGA-BR-4363-01 12 105198777 105198777 A - SLC41A2 3'UTR 0.22 TCGA-BR-4363-01 12 106460931 106460931 C T NUAK1 Missense_Mutation p.M545I 0.34 tolerated(0.45) benign(0) TCGA-BR-4363-01 12 108985933 108985933 C - TMEM119 Frame_Shift_Del p.G76Afs*12 0.27 TCGA-BR-4363-01 12 109671600 109671600 C - ACACB Frame_Shift_Del p.L1398Sfs*26 0.23 TCGA-BR-4363-01 12 109967832 109967832 G A UBE3B Missense_Mutation p.R922H 0.32 deleterious(0) possibly_damaging(0.903) TCGA-BR-4363-01 12 110370767 110370767 C T GIT2 3'UTR 0.33 TCGA-BR-4363-01 12 110370843 110370843 G A GIT2 Silent p.Y740Y 0.29 TCGA-BR-4363-01 12 110643263 110643263 C T IFT81 Missense_Mutation p.R554C 0.34 deleterious(0) possibly_damaging(0.896) TCGA-BR-4363-01 12 111158948 111158948 T - PPP1CC Frame_Shift_Del p.K302Rfs*9 0.31 TCGA-BR-4363-01 12 113348996 113348996 A G OAS1 Missense_Mutation p.K204E 0.28 deleterious(0.02) probably_damaging(1) TCGA-BR-4363-01 12 11548471 11548471 G A PRB2 5'UTR 0.27 TCGA-BR-4363-01 12 121867790 121867790 T G KDM2B 3'UTR 0.36 TCGA-BR-4363-01 12 122685346 122685346 C - LRRC43 Frame_Shift_Del p.I561Sfs*10 0.23 TCGA-BR-4363-01 12 123270349 123270349 G A CCDC62 Silent p.T160T 0.30 TCGA-BR-4363-01 12 124106442 124106442 G A EIF2B1 Missense_Mutation p.A260V 0.33 tolerated(0.37) benign(0.001) TCGA-BR-4363-01 12 133359063 133359063 C T GOLGA3 Missense_Mutation p.G1095D 0.23 tolerated(0.22) probably_damaging(0.954) TCGA-BR-4363-01 12 20522723 20522723 G - PDE3A Frame_Shift_Del p.E171Kfs*36 0.26 TCGA-BR-4363-01 12 23689454 23689454 G A SOX5 Missense_Mutation p.R641C 0.22 deleterious(0) probably_damaging(0.997) TCGA-BR-4363-01 12 2714935 2714935 G - CACNA1C Frame_Shift_Del p.V1068Sfs*58 0.25 TCGA-BR-4363-01 12 29469849 29469849 G A FAR2 Missense_Mutation p.S344N 0.33 tolerated(0.19) benign(0.001) TCGA-BR-4363-01 12 3104142 3104142 C T TEAD4 Silent p.D70D 0.35 TCGA-BR-4363-01 12 39763594 39763594 T - KIF21A Frame_Shift_Del p.K129Nfs*3 0.23 TCGA-BR-4363-01 12 44148200 44148200 T C PUS7L Silent p.K283K 0.26 TCGA-BR-4363-01 12 46285639 46285639 T C ARID2 Missense_Mutation p.C1667R 0.06 deleterious(0) probably_damaging(0.948) TCGA-BR-4363-01 12 46315841 46315841 T - SCAF11 Frame_Shift_Del p.N1461Tfs*2 0.26 TCGA-BR-4363-01 12 4778941 4778941 T C NDUFA9 Missense_Mutation p.V253A 0.22 tolerated(0.49) benign(0.034) TCGA-BR-4363-01 12 48185439 48185439 A G HDAC7 Silent p.S621S 0.26 TCGA-BR-4363-01 12 4919240 4919240 G A KCNA6 Silent p.A11A 0.19 TCGA-BR-4363-01 12 49724166 49724166 A G TROAP Missense_Mutation p.Q513R 0.26 tolerated_low_confidence(0.05) benign(0.027) TCGA-BR-4363-01 12 49729777 49729777 T C C1QL4 Missense_Mutation p.M162V 0.23 tolerated(0.39) possibly_damaging(0.688) TCGA-BR-4363-01 12 49993929 49993929 C A FAM186B Missense_Mutation p.E498D 0.33 deleterious(0.04) probably_damaging(0.915) TCGA-BR-4363-01 12 54394139 54394139 C T HOXC9 Missense_Mutation p.A56V 0.29 deleterious(0.04) probably_damaging(0.992) TCGA-BR-4363-01 12 55945307 55945307 T - OR6C4 Frame_Shift_Del p.F101Lfs*31 0.26 TCGA-BR-4363-01 12 56332996 56332996 T C DGKA Silent p.I167I 0.07 TCGA-BR-4363-01 12 56525096 56525096 T C ESYT1 Missense_Mutation p.M237T 0.34 deleterious(0) benign(0.239) TCGA-BR-4363-01 12 57114329 57114329 T C NACA Missense_Mutation p.S329G 0.31 deleterious_low_confidence(0.05) benign(0.001) TCGA-BR-4363-01 12 57114975 57114975 T C NACA Silent p.P113P 0.35 TCGA-BR-4363-01 12 57648686 57648686 G A R3HDM2 Missense_Mutation p.A934V 0.32 deleterious(0) probably_damaging(0.997) TCGA-BR-4363-01 12 57927827 57927827 C - DCTN2 Frame_Shift_Del p.G198Efs*39 0.25 TCGA-BR-4363-01 12 63113972 63113972 C A PPM1H Missense_Mutation p.R351M 0.19 deleterious(0) probably_damaging(0.998) TCGA-BR-4363-01 12 661272 661272 G T B4GALNT3 Missense_Mutation p.S384I 0.29 deleterious(0) probably_damaging(0.924) TCGA-BR-4363-01 12 66531853 66531853 T A TMBIM4 Missense_Mutation p.M202L 0.36 tolerated(0.06) possibly_damaging(0.777) TCGA-BR-4363-01 12 6701626 6701626 C T CHD4 Missense_Mutation p.D961N 0.06 deleterious(0) probably_damaging(0.948) TCGA-BR-4363-01 12 67696213 67696213 T A CAND1 Missense_Mutation p.F371I 0.32 deleterious(0.03) benign(0.227) TCGA-BR-4363-01 12 70949083 70949083 G - PTPRB Frame_Shift_Del p.P1667Lfs*9 0.33 TCGA-BR-4363-01 12 78583914 78583914 T G NAV3 Missense_Mutation p.L2047R 0.10 deleterious(0) probably_damaging(0.913) TCGA-BR-4363-01 12 81110771 81110771 G A MYF5 5'UTR 0.24 TCGA-BR-4363-01 12 88524079 88524079 T - CEP290 Frame_Shift_Del p.N212Tfs*14 0.27 TCGA-BR-4363-01 12 9301589 9301589 A G PZP Silent p.D1476D 0.26 TCGA-BR-4363-01 13 107219984 107219984 A G ARGLU1 Missense_Mutation p.L95P 0.27 tolerated(0.2) benign(0.064) TCGA-BR-4363-01 13 109475609 109475609 C T MYO16 Silent p.P338P 0.25 TCGA-BR-4363-01 13 110838771 110838771 C T COL4A1 Missense_Mutation p.A620T 0.34 benign(0.246) TCGA-BR-4363-01 13 113783899 113783899 C T F10 Silent p.R68R 0.31 TCGA-BR-4363-01 13 114188557 114188557 T C TMCO3 Splice_Site p.X513_splice 0.35 TCGA-BR-4363-01 13 28136741 28136741 G A LNX2 Missense_Mutation p.R345W 0.33 deleterious(0.01) probably_damaging(0.992) TCGA-BR-4363-01 13 37679534 37679534 C T CSNK1A1L 5'UTR 0.27 TCGA-BR-4363-01 13 43643080 43643080 C T DNAJC15 Missense_Mutation p.R59W 0.32 deleterious(0) possibly_damaging(0.513) TCGA-BR-4363-01 13 46083903 46083903 G A COG3 Silent p.T557T 0.34 TCGA-BR-4363-01 13 52351200 52351200 C T DHRS12 Missense_Mutation p.R169Q 0.34 deleterious(0.03) benign(0.019) TCGA-BR-4363-01 13 99481946 99481946 T C DOCK9 Missense_Mutation p.Q1544R 0.12 deleterious(0) possibly_damaging(0.69) TCGA-BR-4363-01 14 101439032 101439032 G A SNORD114-15 RNA 0.28 TCGA-BR-4363-01 14 21216035 21216035 C T EDDM3A Missense_Mutation p.A99V 0.25 deleterious(0.01) benign(0.042) TCGA-BR-4363-01 14 35577434 35577434 A - PPP2R3C Frame_Shift_Del p.F138Sfs*28 0.25 TCGA-BR-4363-01 14 37641501 37641501 C T SLC25A21 Missense_Mutation p.A19T 0.25 deleterious(0) possibly_damaging(0.744) TCGA-BR-4363-01 14 50074337 50074337 C T LRR1 Nonsense_Mutation p.R168* 0.24 TCGA-BR-4363-01 14 50769617 50769617 T C L2HGDH Intron 0.34 TCGA-BR-4363-01 14 51467459 51467459 G A TRIM9 Missense_Mutation p.T469M 0.34 tolerated(0.22) benign(0.002) TCGA-BR-4363-01 14 52478375 52478375 G A NID2 Silent p.Y1149Y 0.29 TCGA-BR-4363-01 14 53194281 53194281 A - PSMC6 Frame_Shift_Del p.V388Wfs*20 0.32 TCGA-BR-4363-01 14 53386064 53386064 T - FERMT2 Frame_Shift_Del p.D57Ifs*17 0.31 TCGA-BR-4363-01 14 59834294 59834294 C T DAAM1 Missense_Mutation p.R1002C 0.35 deleterious(0) probably_damaging(0.993) TCGA-BR-4363-01 14 64514742 64514742 T C SYNE2 Missense_Mutation p.S2416P 0.20 probably_damaging(0.999) TCGA-BR-4363-01 14 65253382 65253382 G A SPTB Nonsense_Mutation p.Q1101* 0.26 TCGA-BR-4363-01 14 68234521 68234521 G A ZFYVE26 Missense_Mutation p.S1897L 0.21 tolerated(0.14) benign(0.003) TCGA-BR-4363-01 14 74193673 74193673 C T ELMSAN1 Missense_Mutation p.R722Q 0.22 tolerated(0.06) probably_damaging(0.997) TCGA-BR-4363-01 14 74531402 74531404 AGA - CCDC176 Missense_Mutation 0.29 TCGA-BR-4363-01 14 76633039 76633039 T C GPATCH2L Silent p.T232T 0.30 TCGA-BR-4363-01 14 77492310 77492310 C T IRF2BPL Missense_Mutation p.R609Q 0.22 tolerated(0.07) unknown(0) TCGA-BR-4363-01 14 77889102 77889102 A G NOXRED1 Missense_Mutation p.F44S 0.32 deleterious(0) possibly_damaging(0.894) TCGA-BR-4363-01 14 78018519 78018519 G A SPTLC2 Missense_Mutation p.A408V 0.25 deleterious(0) possibly_damaging(0.904) TCGA-BR-4363-01 14 88938739 88938739 C T PTPN21 Missense_Mutation p.R907Q 0.23 deleterious(0) possibly_damaging(0.887) TCGA-BR-4363-01 14 99641482 99641482 C T BCL11B Missense_Mutation p.R564H 0.33 tolerated(0.14) benign(0.001) TCGA-BR-4363-01 15 25227356 25227356 T - SNRPN 3'Flank 0.12 TCGA-BR-4363-01 15 25453235 25453235 G A SNORD115-21 RNA 0.32 TCGA-BR-4363-01 15 38614463 38614463 A - SPRED1 Frame_Shift_Del p.D79Tfs*42 0.23 TCGA-BR-4363-01 15 40628851 40628852 - T C15orf52 Frame_Shift_Ins p.A315Sfs*51 0.47 TCGA-BR-4363-01 15 41795877 41795877 G - LTK 3'UTR 0.30 TCGA-BR-4363-01 15 42139856 42139856 G A PLA2G4B Missense_Mutation p.R946Q 0.30 tolerated(0.08) probably_damaging(0.995) TCGA-BR-4363-01 15 42170721 42170721 G A SPTBN5 Missense_Mutation p.R1097C 0.24 benign(0.006) TCGA-BR-4363-01 15 43819858 43819858 C - MAP1A Frame_Shift_Del p.R2065Vfs*5 0.29 TCGA-BR-4363-01 15 43910158 43910158 G - STRC Frame_Shift_Del p.P154Lfs*30 0.16 TCGA-BR-4363-01 15 45433228 45433228 C T DUOX1 Missense_Mutation p.R509W 0.25 deleterious(0) probably_damaging(1) TCGA-BR-4363-01 15 48527143 48527143 T - SLC12A1 Frame_Shift_Del p.F388Sfs*40 0.28 TCGA-BR-4363-01 15 58256130 58256130 G A ALDH1A2 Missense_Mutation p.R347C 0.26 deleterious(0) probably_damaging(0.98) TCGA-BR-4363-01 15 59376343 59376343 C - RNF111 Frame_Shift_Del p.P782Hfs*44 0.29 TCGA-BR-4363-01 15 64496717 64496717 G A CSNK1G1 Missense_Mutation p.R308W 0.36 deleterious(0.01) probably_damaging(0.994) TCGA-BR-4363-01 15 73879916 73879916 C T NPTN Missense_Mutation p.V219I 0.23 tolerated(0.15) benign(0.305) TCGA-BR-4363-01 15 74043456 74043456 C T C15orf59 Missense_Mutation p.A6T 0.32 tolerated_low_confidence(1) benign(0.002) TCGA-BR-4363-01 15 75112400 75112400 T C LMAN1L Missense_Mutation p.L245P 0.29 deleterious(0) probably_damaging(0.978) TCGA-BR-4363-01 15 75309055 75309055 C T SCAMP5 Silent p.Y86Y 0.35 TCGA-BR-4363-01 15 75981454 75981454 G - CSPG4 Frame_Shift_Del p.P651Rfs*4 0.17 TCGA-BR-4363-01 15 78393576 78393576 C A SH2D7 Silent p.T327T 0.33 TCGA-BR-4363-01 15 81176682 81176682 C T KIAA1199 Missense_Mutation p.H262Y 0.29 tolerated(0.61) benign(0.285) TCGA-BR-4363-01 15 83331474 83331474 G A AP3B2 Silent p.G916G 0.23 TCGA-BR-4363-01 15 85400935 85400935 G A ALPK3 Missense_Mutation p.G1191E 0.40 tolerated_low_confidence(0.12) benign(0.056) TCGA-BR-4363-01 15 90168613 90168613 C T TICRR Missense_Mutation p.A1691V 0.21 deleterious(0) probably_damaging(0.999) TCGA-BR-4363-01 15 90342507 90342507 C T ANPEP Missense_Mutation p.A665T 0.25 deleterious(0.03) benign(0.273) TCGA-BR-4363-01 16 115006 115006 T C RHBDF1 Missense_Mutation p.E3G 0.27 deleterious_low_confidence(0.05) possibly_damaging(0.606) TCGA-BR-4363-01 16 15165070 15165070 T - RRN3 Frame_Shift_Del p.K389Nfs*34 0.29 TCGA-BR-4363-01 16 1536245 1536245 C T PTX4 Missense_Mutation p.V373M 0.21 tolerated(0.17) possibly_damaging(0.63) TCGA-BR-4363-01 16 1818554 1818554 G A MAPK8IP3 Silent p.S1272S 0.78 TCGA-BR-4363-01 16 28488902 28488902 G T CLN3 Missense_Mutation p.L418M 0.25 deleterious(0.01) probably_damaging(0.979) TCGA-BR-4363-01 16 28917352 28917352 G A RABEP2 Missense_Mutation p.R471W 0.55 deleterious(0.02) possibly_damaging(0.815) TCGA-BR-4363-01 16 29888645 29888645 G A SEZ6L2 Missense_Mutation p.P619L 0.30 deleterious(0.01) possibly_damaging(0.541) TCGA-BR-4363-01 16 30087657 30087657 G - PPP4C 5'UTR 0.37 TCGA-BR-4363-01 16 3063873 3063873 G T CLDN9 Silent p.A170A 0.38 TCGA-BR-4363-01 16 30723591 30723591 G A SRCAP Silent p.T608T 0.21 TCGA-BR-4363-01 16 30982823 30982823 C G SETD1A Silent p.S1047S 0.32 TCGA-BR-4363-01 16 4016487 4016487 C T ADCY9 Silent p.A1117A 0.24 TCGA-BR-4363-01 16 4701983 4701983 C - MGRN1 Frame_Shift_Del p.H78Tfs*4 0.27 TCGA-BR-4363-01 16 48234332 48234332 C T ABCC11 Missense_Mutation p.R646H 0.24 deleterious(0) probably_damaging(1) TCGA-BR-4363-01 16 48577044 48577044 C T N4BP1 Missense_Mutation p.S821N 0.38 deleterious(0.02) benign(0.007) TCGA-BR-4363-01 16 51175880 51175880 A C SALL1 Missense_Mutation p.F85V 0.26 tolerated(0.1) possibly_damaging(0.678) TCGA-BR-4363-01 16 53488589 53488589 T C RBL2 Silent p.Y338Y 0.24 TCGA-BR-4363-01 16 57688000 57688000 G A GPR56 Silent p.Q241Q 0.31 TCGA-BR-4363-01 16 65006929 65006929 C T CDH11 Missense_Mutation p.R423H 0.34 tolerated(0.17) benign(0.012) TCGA-BR-4363-01 16 67325658 67325658 G - KCTD19 Frame_Shift_Del p.V768Wfs*38 0.32 TCGA-BR-4363-01 16 67762413 67762413 C T RANBP10 Missense_Mutation p.D452N 0.21 tolerated(0.41) possibly_damaging(0.899) TCGA-BR-4363-01 16 69390851 69390851 C T TERF2 Missense_Mutation p.V485M 0.30 deleterious(0) probably_damaging(0.996) TCGA-BR-4363-01 16 70698147 70698147 G - MTSS1L Frame_Shift_Del p.G560Afs*34 0.26 TCGA-BR-4363-01 16 70708346 70708346 G A MTSS1L Missense_Mutation p.R306C 0.24 deleterious(0) probably_damaging(0.998) TCGA-BR-4363-01 16 74334988 74334988 T - PSMD7 Frame_Shift_Del p.L70* 0.20 TCGA-BR-4363-01 16 74339301 74339301 C T PSMD7 Silent p.V215V 0.31 TCGA-BR-4363-01 16 767234 767234 C T METRN Silent p.G243G 0.50 TCGA-BR-4363-01 16 77353831 77353831 C A ADAMTS18 Missense_Mutation p.G816V 0.22 deleterious(0) probably_damaging(1) TCGA-BR-4363-01 16 88694459 88694459 C - ZC3H18 Frame_Shift_Del p.Q804Sfs*15 0.27 TCGA-BR-4363-01 16 89258129 89258129 C A CDH15 Missense_Mutation p.P481H 0.16 deleterious(0) probably_damaging(1) TCGA-BR-4363-01 16 89592837 89592837 G T SPG7 Missense_Mutation p.R240M 0.22 tolerated(0.21) probably_damaging(0.994) TCGA-BR-4363-01 16 89804163 89804163 C T FANCA 3'UTR 0.30 TCGA-BR-4363-01 16 90075763 90075763 G A DBNDD1 Missense_Mutation p.T56M 0.33 deleterious_low_confidence(0.03) possibly_damaging(0.702) TCGA-BR-4363-01 17 11511605 11511606 - A DNAH9 Frame_Shift_Ins p.M195Nfs*9 0.31 TCGA-BR-4363-01 17 11520904 11520904 C T DNAH9 Silent p.L361L 0.25 TCGA-BR-4363-01 17 13399907 13399907 C T HS3ST3A1 Silent p.A276A 0.17 TCGA-BR-4363-01 17 15134393 15134393 C T PMP22 Silent p.L108L 0.32 TCGA-BR-4363-01 17 16332204 16332204 C T TRPV2 Missense_Mutation p.L499F 0.04 deleterious(0) probably_damaging(0.995) TCGA-BR-4363-01 17 17078646 17078646 C T MPRIP Missense_Mutation p.R877W 0.25 deleterious(0.01) probably_damaging(0.982) TCGA-BR-4363-01 17 18923663 18923663 C T SLC5A10 Silent p.H586H 0.26 TCGA-BR-4363-01 17 26449711 26449711 A G NLK Missense_Mutation p.R181G 0.27 deleterious(0) probably_damaging(0.999) TCGA-BR-4363-01 17 26854350 26854350 T C FOXN1 Missense_Mutation p.Y224H 0.19 deleterious(0) probably_damaging(0.963) TCGA-BR-4363-01 17 27957711 27957711 T G SSH2 3'UTR 0.28 TCGA-BR-4363-01 17 28791882 28791882 T A CPD 3'UTR 0.32 TCGA-BR-4363-01 17 28811743 28811743 T C GOSR1 Silent p.N101N 0.29 TCGA-BR-4363-01 17 3181654 3181654 C A OR3A2 Missense_Mutation p.Q192H 0.28 deleterious(0) probably_damaging(0.984) TCGA-BR-4363-01 17 32964419 32964419 G A TMEM132E Missense_Mutation p.R708H 0.29 deleterious(0) probably_damaging(0.999) TCGA-BR-4363-01 17 34171886 34171886 G - TAF15 Frame_Shift_Del p.G530Afs*116 0.37 TCGA-BR-4363-01 17 37099048 37099048 C T FBXO47 Missense_Mutation p.V356I 0.25 tolerated(1) benign(0.001) TCGA-BR-4363-01 17 40939870 40939870 G - WNK4 Frame_Shift_Del p.V608Cfs*53 0.34 TCGA-BR-4363-01 17 40940150 40940150 T C WNK4 Silent p.A622A 0.29 TCGA-BR-4363-01 17 40970864 40970864 T G BECN1 Missense_Mutation p.T98P 0.30 deleterious(0.03) probably_damaging(0.914) TCGA-BR-4363-01 17 40997723 40997723 G T AOC2 Missense_Mutation p.Q360H 0.21 deleterious(0) probably_damaging(0.999) TCGA-BR-4363-01 17 41477611 41477611 G C ARL4D Missense_Mutation p.V171L 0.47 tolerated(0.16) benign(0.028) TCGA-BR-4363-01 17 41568548 41568548 C A DHX8 Missense_Mutation p.P108H 0.26 tolerated(0.2) unknown(0) TCGA-BR-4363-01 17 42475142 42475142 C T GPATCH8 Missense_Mutation p.A1435T 0.25 tolerated(1) unknown(0) TCGA-BR-4363-01 17 43314678 43314678 G A FMNL1 Missense_Mutation p.A252T 0.39 tolerated(0.18) unknown(0) TCGA-BR-4363-01 17 47799955 47799955 G A FAM117A Missense_Mutation p.T123M 0.16 deleterious(0.01) probably_damaging(1) TCGA-BR-4363-01 17 4796057 4796057 G A MINK1 Missense_Mutation p.V769M 0.38 tolerated(0.17) possibly_damaging(0.818) TCGA-BR-4363-01 17 48539865 48539865 C T ACSF2 Silent p.S237S 0.21 TCGA-BR-4363-01 17 56389796 56389796 G A BZRAP1 Missense_Mutation p.R796C 0.30 tolerated(0.05) benign(0.001) TCGA-BR-4363-01 17 61021590 61021590 T A MIR633 RNA 0.23 TCGA-BR-4363-01 17 6367557 6367557 T C PITPNM3 Missense_Mutation p.I697V 0.27 tolerated(0.78) benign(0.002) TCGA-BR-4363-01 17 6381912 6381912 G T PITPNM3 Nonsense_Mutation p.Y244* 0.38 TCGA-BR-4363-01 17 6544415 6544417 GAG - TXNDC17 In_Frame_Del p.E6del 0.31 TCGA-BR-4363-01 17 70119910 70119910 G - SOX9 Frame_Shift_Del p.V306Cfs*77 0.32 TCGA-BR-4363-01 17 71394205 71394205 G A SDK2 Missense_Mutation p.A1108V 0.18 deleterious(0.04) probably_damaging(0.967) TCGA-BR-4363-01 17 7320661 7320661 C T NLGN2 Missense_Mutation p.A684V 0.40 deleterious(0.02) probably_damaging(0.97) TCGA-BR-4363-01 17 73498994 73498994 C T CASKIN2 Missense_Mutation p.G721S 0.38 tolerated(0.4) benign(0.042) TCGA-BR-4363-01 17 7366997 7366997 G A ZBTB4 Missense_Mutation p.P435L 0.21 benign(0.043) TCGA-BR-4363-01 17 7577036 7577036 G - TP53 Frame_Shift_Del p.P301Qfs*44 0.28 TCGA-BR-4363-01 17 7578263 7578263 G A TP53 Nonsense_Mutation p.R196* 0.25 TCGA-BR-4363-01 17 7674152 7674152 C A DNAH2 Silent p.A1421A 0.33 TCGA-BR-4363-01 17 7760123 7760123 C T LSMD1 Missense_Mutation p.A150T 0.24 tolerated(0.08) probably_damaging(0.984) TCGA-BR-4363-01 17 78286879 78286879 C T RNF213 Missense_Mutation p.A908V 0.34 benign(0.012) TCGA-BR-4363-01 17 7976012 7976013 - T ALOX12B 3'UTR 0.33 TCGA-BR-4363-01 17 79803764 79803764 T - P4HB Frame_Shift_Del p.N387Tfs*118 0.29 TCGA-BR-4363-01 17 80714084 80714084 G A TBCD Silent p.P76P 0.37 TCGA-BR-4363-01 17 8409738 8409738 G A MYH10 Missense_Mutation p.T1095M 0.28 possibly_damaging(0.511) TCGA-BR-4363-01 17 8732080 8732080 T C PIK3R6 Missense_Mutation p.K373E 0.43 deleterious(0) possibly_damaging(0.693) TCGA-BR-4363-01 18 19154750 19154750 T - ESCO1 Frame_Shift_Del p.S19Vfs*17 0.26 TCGA-BR-4363-01 18 211160 211160 A C USP14 Missense_Mutation p.K454T 0.28 tolerated(0.35) benign(0.101) TCGA-BR-4363-01 18 22057478 22057478 A - HRH4 Frame_Shift_Del p.K377Sfs*30 0.09 TCGA-BR-4363-01 18 29867460 29867460 T C GAREM Missense_Mutation p.H367R 0.33 tolerated(0.05) probably_damaging(0.968) TCGA-BR-4363-01 18 42531918 42531918 T C SETBP1 Silent p.I871I 0.32 TCGA-BR-4363-01 18 46385731 46385731 G A CTIF Missense_Mutation p.R535Q 0.33 deleterious(0.02) possibly_damaging(0.596) TCGA-BR-4363-01 18 50278508 50278508 T C DCC Missense_Mutation p.L59P 0.34 deleterious(0) probably_damaging(0.95) TCGA-BR-4363-01 18 52895520 52895520 G - TCF4 Frame_Shift_Del p.P753Lfs*32 0.27 TCGA-BR-4363-01 18 72776341 72776341 G A ZNF407 Missense_Mutation p.V2222M 0.40 tolerated(1) benign(0.002) TCGA-BR-4363-01 18 73000627 73000627 T C TSHZ1 3'UTR 0.24 TCGA-BR-4363-01 18 74649233 74649233 G A ZNF236 Silent p.T1570T 0.21 TCGA-BR-4363-01 19 10222333 10222333 C T P2RY11 5'UTR 0.14 TCGA-BR-4363-01 19 11488894 11488894 G - EPOR Frame_Shift_Del p.S432Afs*21 0.35 TCGA-BR-4363-01 19 1207077 1207077 G - STK11 Frame_Shift_Del p.E57Kfs*7 0.30 TCGA-BR-4363-01 19 12821569 12821569 G A TNPO2 Missense_Mutation p.A379V 0.28 deleterious(0) benign(0.355) TCGA-BR-4363-01 19 14736376 14736376 G A EMR3 Silent p.I616I 0.27 TCGA-BR-4363-01 19 15917904 15917904 T - OR10H1 Frame_Shift_Del p.N315Mfs*2 0.28 TCGA-BR-4363-01 19 15989624 15989624 C T CYP4F2 Missense_Mutation p.R507H 0.24 deleterious(0.01) probably_damaging(0.924) TCGA-BR-4363-01 19 17015120 17015120 C G CPAMD8 Silent p.L1436L 0.19 TCGA-BR-4363-01 19 17015121 17015121 A C CPAMD8 Missense_Mutation p.L1436R 0.17 tolerated(0.35) possibly_damaging(0.786) TCGA-BR-4363-01 19 19338902 19338902 A G NCAN Missense_Mutation p.T825A 0.34 tolerated(0.2) benign(0.079) TCGA-BR-4363-01 19 2435142 2435142 C T LMNB2 Missense_Mutation p.E238K 0.33 deleterious(0) probably_damaging(0.95) TCGA-BR-4363-01 19 34991049 34991049 C T WTIP Silent p.L390L 0.42 TCGA-BR-4363-01 19 35793406 35793406 G A MAG Silent p.T342T 0.39 TCGA-BR-4363-01 19 36038232 36038232 C T TMEM147 Silent p.F186F 0.30 TCGA-BR-4363-01 19 36431600 36431600 C - LRFN3 Frame_Shift_Del p.P426Lfs*8 0.31 TCGA-BR-4363-01 19 36558338 36558338 A G WDR62 Missense_Mutation p.E231G 0.29 deleterious(0.04) probably_damaging(0.966) TCGA-BR-4363-01 19 36595830 36595830 C T WDR62 Missense_Mutation p.P1491L 0.27 deleterious_low_confidence(0.03) possibly_damaging(0.827) TCGA-BR-4363-01 19 37642418 37642418 T - ZNF585A 3'UTR 0.13 TCGA-BR-4363-01 19 37835534 37835534 C - HKR1 5'UTR 0.30 TCGA-BR-4363-01 19 38055639 38055639 C A ZNF571 Missense_Mutation p.G564V 0.23 deleterious(0) probably_damaging(0.999) TCGA-BR-4363-01 19 38990408 38990408 C T RYR1 Silent p.S2387S 0.25 TCGA-BR-4363-01 19 39410406 39410406 C T SARS2 Missense_Mutation p.R254H 0.36 tolerated(0.28) benign(0.009) TCGA-BR-4363-01 19 39691287 39691287 G A NCCRP1 Missense_Mutation p.G240D 0.34 deleterious(0) probably_damaging(1) TCGA-BR-4363-01 19 40357606 40357607 AC - FCGBP Frame_Shift_Del p.V5236Pfs*11 0.19 TCGA-BR-4363-01 19 40382380 40382380 G A FCGBP Silent p.G3502G 0.15 TCGA-BR-4363-01 19 40842077 40842077 G A C19orf47 Silent p.G91G 0.35 TCGA-BR-4363-01 19 40996063 40996063 G A SPTBN4 Missense_Mutation p.V135M 0.33 deleterious(0) possibly_damaging(0.87) TCGA-BR-4363-01 19 42795129 42795129 G A CIC Missense_Mutation p.A737T 0.43 benign(0.004) TCGA-BR-4363-01 19 44892073 44892073 C T ZNF285 Missense_Mutation p.A112T 0.30 tolerated(0.17) benign(0.051) TCGA-BR-4363-01 19 4704312 4704312 G A DPP9 Missense_Mutation p.T144M 0.35 tolerated(0.07) probably_damaging(0.953) TCGA-BR-4363-01 19 47570582 47570582 G A ZC3H4 Silent p.P981P 0.30 TCGA-BR-4363-01 19 4941597 4941597 G A UHRF1 RNA 0.15 TCGA-BR-4363-01 19 49685882 49685882 G T TRPM4 Silent p.R437R 0.25 TCGA-BR-4363-01 19 49794007 49794007 G A SLC6A16 Missense_Mutation p.T599M 0.38 tolerated(0.33) benign(0.01) TCGA-BR-4363-01 19 50000524 50000526 AGG - RPS11 In_Frame_Del p.E31del 0.15 TCGA-BR-4363-01 19 50156263 50156263 C T SCAF1 Missense_Mutation p.R873C 0.36 unknown(0) TCGA-BR-4363-01 19 50393802 50393802 G A IL4I1 Silent p.L299L 0.19 TCGA-BR-4363-01 19 50905061 50905061 C - POLD1 Frame_Shift_Del p.P116Hfs*53 0.25 TCGA-BR-4363-01 19 51021562 51021562 C T LRRC4B Missense_Mutation p.G470S 0.45 tolerated_low_confidence(0.91) benign(0.068) TCGA-BR-4363-01 19 51219975 51219975 C T SHANK1 Missense_Mutation p.A68T 0.31 benign(0.089) TCGA-BR-4363-01 19 51582715 51582715 T G KLK14 Missense_Mutation p.S169R 0.19 deleterious(0) probably_damaging(0.994) TCGA-BR-4363-01 19 54200863 54200863 C T MIR525 RNA 0.21 TCGA-BR-4363-01 19 54515282 54515282 C - CACNG6 Frame_Shift_Del p.P209Rfs*21 0.29 TCGA-BR-4363-01 19 54760565 54760565 A C LILRB5 Missense_Mutation p.W48G 0.29 deleterious(0.01) probably_damaging(0.974) TCGA-BR-4363-01 19 56896019 56896019 T G ZNF582 Missense_Mutation p.E256A 0.41 tolerated(0.05) benign(0.015) TCGA-BR-4363-01 19 58361288 58361288 T G ZNF587 5'UTR 0.11 TCGA-BR-4363-01 19 58992153 58992153 T G ZNF446 3'UTR 0.37 TCGA-BR-4363-01 19 59028872 59028872 A T ZBTB45 Missense_Mutation p.F57I 0.32 deleterious(0) possibly_damaging(0.583) TCGA-BR-4363-01 19 605189 605189 G A HCN2 Silent p.P395P 0.41 TCGA-BR-4363-01 19 6374970 6374970 C - ALKBH7 Frame_Shift_Del p.P219Qfs*? 0.23 TCGA-BR-4363-01 19 7690872 7690872 T C XAB2 Missense_Mutation p.N239S 0.32 deleterious(0.04) benign(0.284) TCGA-BR-4363-01 19 7697386 7697386 C T PCP2 Missense_Mutation p.E62K 0.25 tolerated(0.07) probably_damaging(0.994) TCGA-BR-4363-01 19 852928 852928 G A ELANE Silent p.A40A 0.43 TCGA-BR-4363-01 19 9325158 9325158 G A OR7D4 Missense_Mutation p.A119V 0.32 deleterious(0.01) possibly_damaging(0.899) TCGA-BR-4363-01 1 104112288 104112288 G A AMY2B Intron 0.23 TCGA-BR-4363-01 1 10509994 10509994 C T CORT 5'UTR 0.39 TCGA-BR-4363-01 1 107866901 107866901 T C NTNG1 Intron 0.32 TCGA-BR-4363-01 1 110085827 110085827 C T GPR61 Silent p.A61A 0.33 TCGA-BR-4363-01 1 110921593 110921593 A G SLC16A4 Silent p.F304F 0.21 TCGA-BR-4363-01 1 11116784 11116784 G A SRM Missense_Mutation p.P138S 0.36 deleterious(0.02) possibly_damaging(0.869) TCGA-BR-4363-01 1 114483597 114483597 C T HIPK1 Missense_Mutation p.R198W 0.22 deleterious(0) probably_damaging(0.998) TCGA-BR-4363-01 1 116931263 116931263 G A ATP1A1 Missense_Mutation p.A169T 0.12 tolerated(0.07) probably_damaging(0.991) TCGA-BR-4363-01 1 117484649 117484649 C - PTGFRN Frame_Shift_Del p.S123Afs*35 0.14 TCGA-BR-4363-01 1 117632754 117632754 A G TTF2 Missense_Mutation p.E807G 0.30 deleterious(0) probably_damaging(0.983) TCGA-BR-4363-01 1 11906037 11906037 G A NPPA 3'UTR 0.36 TCGA-BR-4363-01 1 11918372 11918372 T C NPPB Missense_Mutation p.Y96C 0.22 deleterious(0.01) possibly_damaging(0.756) TCGA-BR-4363-01 1 1266787 1266787 C - TAS1R3 Frame_Shift_Del p.P22Hfs*10 0.40 TCGA-BR-4363-01 1 12677414 12677414 A - DHRS3 5'UTR 0.21 TCGA-BR-4363-01 1 142713604 142713604 A G RP11-417J8.6 RNA 0.14 TCGA-BR-4363-01 1 144881535 144881535 A G PDE4DIP Missense_Mutation p.S1221P 0.20 tolerated(0.1) benign(0.001) TCGA-BR-4363-01 1 144915576 144915576 A G PDE4DIP Missense_Mutation p.C617R 0.18 tolerated(0.3) probably_damaging(0.983) TCGA-BR-4363-01 1 151288916 151288916 A C PI4KB Silent p.T26T 0.24 TCGA-BR-4363-01 1 151747603 151747603 C T TDRKH Missense_Mutation p.A492T 0.19 deleterious(0) probably_damaging(1) TCGA-BR-4363-01 1 152659638 152659638 G - LCE2B Frame_Shift_Del p.G108Afs*7 0.33 TCGA-BR-4363-01 1 153362605 153362605 T - S100A8 Frame_Shift_Del p.S86Afs*10 0.35 TCGA-BR-4363-01 1 153362988 153362988 G T S100A8 Silent p.A8A 0.29 TCGA-BR-4363-01 1 153634950 153634952 CTT - ILF2 In_Frame_Del p.K365del 0.44 TCGA-BR-4363-01 1 154543725 154543725 C T CHRNB2 Silent p.S142S 0.38 TCGA-BR-4363-01 1 155294263 155294263 T C RUSC1 Intron 0.25 TCGA-BR-4363-01 1 155450332 155450332 G A ASH1L Missense_Mutation p.R777C 0.30 deleterious_low_confidence(0.04) benign(0.002) TCGA-BR-4363-01 1 156846308 156846308 C - NTRK1 Frame_Shift_Del p.L585Cfs*73 0.30 TCGA-BR-4363-01 1 158988127 158988127 A G IFI16 Missense_Mutation p.T220A 0.29 tolerated(0.61) benign(0.009) TCGA-BR-4363-01 1 159846359 159846359 C T CCDC19 Missense_Mutation p.E447K 0.24 deleterious(0.01) possibly_damaging(0.531) TCGA-BR-4363-01 1 161201029 161201029 G T NR1I3 Missense_Mutation p.P234H 0.31 deleterious(0) possibly_damaging(0.811) TCGA-BR-4363-01 1 16237752 16237753 TT - SPEN Frame_Shift_Del p.F401Lfs*6 0.26 TCGA-BR-4363-01 1 162467843 162467843 C T UHMK1 Missense_Mutation p.A18V 0.08 tolerated(0.57) benign(0.059) TCGA-BR-4363-01 1 165638534 165638534 G A ALDH9A1 Nonsense_Mutation p.R362* 0.28 TCGA-BR-4363-01 1 167887455 167887455 T C MPC2 3'UTR 0.33 TCGA-BR-4363-01 1 168054869 168054869 C - GPR161 Frame_Shift_Del p.G517Afs*13 0.39 TCGA-BR-4363-01 1 173720977 173720977 C T KLHL20 Silent p.N224N 0.29 TCGA-BR-4363-01 1 176926923 176926923 A G ASTN1 Missense_Mutation p.V593A 0.36 tolerated(0.51) benign(0.234) TCGA-BR-4363-01 1 178854243 178854243 C T RALGPS2 Nonsense_Mutation p.R313* 0.25 TCGA-BR-4363-01 1 179041290 179041290 A - FAM20B 3'UTR 0.17 TCGA-BR-4363-01 1 192628502 192628502 T C RGS13 Missense_Mutation p.I110T 0.34 tolerated(0.57) benign(0.006) TCGA-BR-4363-01 1 19577930 19577930 T A EMC1 Missense_Mutation p.D25V 0.25 deleterious(0) probably_damaging(1) TCGA-BR-4363-01 1 196799764 196799764 C T CFHR1 Nonsense_Mutation p.R248* 0.23 TCGA-BR-4363-01 1 197060039 197060039 G A ASPM Missense_Mutation p.R3193C 0.24 deleterious(0) probably_damaging(0.998) TCGA-BR-4363-01 1 200827020 200827020 A - CAMSAP2 Frame_Shift_Del p.M1426* 0.27 TCGA-BR-4363-01 1 200880598 200880598 C T C1orf106 Missense_Mutation p.A326V 0.28 tolerated(0.31) benign(0.001) TCGA-BR-4363-01 1 201185656 201185656 C - IGFN1 Frame_Shift_Del p.P3125Qfs*9 0.22 TCGA-BR-4363-01 1 202304780 202304780 G A UBE2T Nonsense_Mutation p.R35* 0.35 TCGA-BR-4363-01 1 204413529 204413529 C T PIK3C2B Missense_Mutation p.R901H 0.30 deleterious(0.04) possibly_damaging(0.865) TCGA-BR-4363-01 1 204924033 204924033 C - NFASC Frame_Shift_Del p.P165Rfs*12 0.22 TCGA-BR-4363-01 1 205628251 205628251 T G SLC45A3 3'UTR 0.25 TCGA-BR-4363-01 1 207078326 207078326 C T FAIM3 3'UTR 0.34 TCGA-BR-4363-01 1 20964564 20964564 A C PINK1 Missense_Mutation p.E206A 0.27 tolerated(0.61) benign(0.003) TCGA-BR-4363-01 1 210006641 210006641 G A DIEXF Missense_Mutation p.S167N 0.25 tolerated(0.17) probably_damaging(0.968) TCGA-BR-4363-01 1 215256673 215256673 A - KCNK2 5'UTR 0.29 TCGA-BR-4363-01 1 21599193 21599193 G A ECE1 Silent p.L164L 0.26 TCGA-BR-4363-01 1 223283695 223283695 A - TLR5 3'UTR 0.43 TCGA-BR-4363-01 1 224495799 224495799 T C NVL Missense_Mutation p.E170G 0.03 deleterious(0.04) benign(0.097) TCGA-BR-4363-01 1 227920368 227920368 T G JMJD4 Silent p.R373R 0.26 TCGA-BR-4363-01 1 228003829 228003829 G A PRSS38 Missense_Mutation p.G63S 0.38 deleterious(0) probably_damaging(1) TCGA-BR-4363-01 1 228404718 228404718 C T OBSCN Silent p.L794L 0.32 TCGA-BR-4363-01 1 229685122 229685122 C T ABCB10 Missense_Mutation p.G193R 0.25 deleterious(0) probably_damaging(1) TCGA-BR-4363-01 1 230979323 230979323 G A C1orf198 Missense_Mutation p.P235L 0.26 tolerated(0.36) benign(0.004) TCGA-BR-4363-01 1 23418659 23418660 - C LUZP1 Frame_Shift_Ins p.A699Gfs*3 0.29 TCGA-BR-4363-01 1 235331782 235331782 A - ARID4B 3'UTR 0.51 TCGA-BR-4363-01 1 235345419 235345419 T - ARID4B Frame_Shift_Del p.T939Rfs*2 0.31 TCGA-BR-4363-01 1 235973738 235973741 CTTC - LYST Frame_Shift_Del p.G126Vfs*11 0.27 TCGA-BR-4363-01 1 237666765 237666765 C T RYR2 Missense_Mutation p.T858M 0.06 benign(0.391) TCGA-BR-4363-01 1 240492398 240492398 A - FMN2 Frame_Shift_Del p.I1415* 0.31 TCGA-BR-4363-01 1 244572784 244572784 T C ADSS 3'UTR 0.38 TCGA-BR-4363-01 1 245848974 245848974 C T KIF26B Nonsense_Mutation p.Q897* 0.28 TCGA-BR-4363-01 1 247769005 247769005 G A OR2G3 Missense_Mutation p.V40M 0.28 tolerated(0.14) benign(0.064) TCGA-BR-4363-01 1 248059733 248059733 C - OR2W3 Frame_Shift_Del p.L284Sfs*14 0.22 TCGA-BR-4363-01 1 25825033 25825033 A - TMEM57 3'UTR 0.28 TCGA-BR-4363-01 1 27101117 27101117 C - ARID1A Frame_Shift_Del p.P1468Lfs*13 0.34 TCGA-BR-4363-01 1 29581889 29581889 G T PTPRU Missense_Mutation p.G59V 0.23 tolerated(0.54) benign(0.01) TCGA-BR-4363-01 1 31349751 31349752 - C SDC3 Frame_Shift_Ins p.D173Gfs*97 0.34 TCGA-BR-4363-01 1 33134451 33134451 A G RBBP4 Missense_Mutation p.D199G 0.31 deleterious(0) probably_damaging(0.974) TCGA-BR-4363-01 1 33777760 33777760 G - A3GALT2 Frame_Shift_Del p.W77Gfs*29 0.42 TCGA-BR-4363-01 1 38227120 38227120 G A EPHA10 Silent p.C269C 0.28 TCGA-BR-4363-01 1 41483496 41483496 G A SLFNL1 Silent p.G256G 0.24 TCGA-BR-4363-01 1 42048809 42048809 G - HIVEP3 Frame_Shift_Del p.H554Tfs*20 0.30 TCGA-BR-4363-01 1 43772883 43772883 C T TIE1 Silent p.C237C 0.56 TCGA-BR-4363-01 1 48764291 48764291 T - SPATA6 3'UTR 0.34 TCGA-BR-4363-01 1 53927224 53927224 C T DMRTB1 Missense_Mutation p.P219L 0.29 deleterious(0.02) possibly_damaging(0.77) TCGA-BR-4363-01 1 6212502 6212502 C - CHD5 Frame_Shift_Del p.I281Sfs*185 0.27 TCGA-BR-4363-01 1 6257785 6257785 T - RPL22 Frame_Shift_Del p.K15Rfs*5 0.52 TCGA-BR-4363-01 1 8418972 8418972 G A RERE Missense_Mutation p.A1208V 0.27 unknown(0) TCGA-BR-4363-01 1 92428391 92428391 G A BRDT Missense_Mutation p.R27Q 0.07 tolerated(0.34) possibly_damaging(0.899) TCGA-BR-4363-01 1 94502716 94502716 G A ABCA4 Silent p.D1266D 0.30 TCGA-BR-4363-01 20 10033880 10033880 C A ANKEF1 Missense_Mutation p.P664H 0.33 deleterious(0.01) benign(0.182) TCGA-BR-4363-01 20 10036224 10036224 G T ANKEF1 Missense_Mutation p.E749D 0.40 tolerated(0.3) possibly_damaging(0.638) TCGA-BR-4363-01 20 10394237 10394237 G A MKKS 5'UTR 0.31 TCGA-BR-4363-01 20 2816204 2816204 C - PCED1A Frame_Shift_Del p.C425Afs*11 0.28 TCGA-BR-4363-01 20 31022442 31022442 G - ASXL1 Frame_Shift_Del p.G645Vfs*58 0.38 TCGA-BR-4363-01 20 32255583 32255583 G A ACTL10 Missense_Mutation p.D94N 0.29 deleterious(0) probably_damaging(0.964) TCGA-BR-4363-01 20 35060141 35060141 C T DLGAP4 Silent p.S7S 0.29 TCGA-BR-4363-01 20 35154459 35154459 G T DLGAP4 Intron 0.33 TCGA-BR-4363-01 20 44695696 44695699 TGTC - NCOA5 Frame_Shift_Del p.T209Kfs*17 0.30 TCGA-BR-4363-01 20 47865975 47865975 G T ZNFX1 Missense_Mutation p.L1196I 0.35 tolerated(0.24) benign(0.122) TCGA-BR-4363-01 20 48129730 48129730 G T PTGIS Missense_Mutation p.L365M 0.26 tolerated(0.98) benign(0.012) TCGA-BR-4363-01 20 50139969 50139969 G A NFATC2 Missense_Mutation p.R271C 0.41 deleterious(0.01) benign(0.339) TCGA-BR-4363-01 20 58519082 58519082 C T FAM217B Silent p.H28H 0.34 TCGA-BR-4363-01 20 61541269 61541269 T C DIDO1 Missense_Mutation p.I315V 0.28 probably_damaging(0.93) TCGA-BR-4363-01 20 62839241 62839241 G A MYT1 Missense_Mutation p.R231H 0.34 benign(0.01) TCGA-BR-4363-01 21 31691822 31691822 C T KRTAP26-1 Missense_Mutation p.V178I 0.40 tolerated(0.62) benign(0.12) TCGA-BR-4363-01 21 32617973 32617973 C T TIAM1 Missense_Mutation p.C472Y 0.38 deleterious(0) probably_damaging(0.989) TCGA-BR-4363-01 21 43162041 43162041 C T RIPK4 Missense_Mutation p.G438S 0.42 tolerated(0.1) benign(0.008) TCGA-BR-4363-01 21 44437072 44437072 G A PKNOX1 Missense_Mutation p.A193T 0.45 tolerated(0.14) benign(0.368) TCGA-BR-4363-01 22 17983977 17983977 C T CECR2 Nonsense_Mutation p.R226* 0.29 TCGA-BR-4363-01 22 18021539 18021539 A G CECR2 Silent p.V611V 0.27 TCGA-BR-4363-01 22 18070848 18070848 A G SLC25A18 Intron 0.30 TCGA-BR-4363-01 22 18355566 18355566 T C MICAL3 Intron 0.34 TCGA-BR-4363-01 22 21322145 21322145 G - AIFM3 5'UTR 0.18 TCGA-BR-4363-01 22 24717989 24717989 T C SPECC1L Silent p.S347S 0.20 TCGA-BR-4363-01 22 31679239 31679239 A G PIK3IP1 Missense_Mutation p.V208A 0.22 tolerated(0.38) benign(0.001) TCGA-BR-4363-01 22 41620769 41620769 G T L3MBTL2 Missense_Mutation p.K405N 0.25 deleterious(0.02) benign(0.003) TCGA-BR-4363-01 22 41923448 41923448 C T POLR3H 3'UTR 0.31 TCGA-BR-4363-01 22 43227589 43227589 T C ARFGAP3 Silent p.S177S 0.34 TCGA-BR-4363-01 22 45818216 45818216 G A RIBC2 Silent p.K196K 0.04 TCGA-BR-4363-01 22 50906280 50906280 C T SBF1 Missense_Mutation p.D72N 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-BR-4363-01 2 103090202 103090204 AGG - SLC9A4 5'UTR 0.25 TCGA-BR-4363-01 2 108994703 108994703 G A SULT1C4 5'UTR 0.34 TCGA-BR-4363-01 2 109116015 109116015 A G GCC2 Missense_Mutation p.K1597E 0.18 deleterious(0) probably_damaging(0.985) TCGA-BR-4363-01 2 112832491 112832491 T C TMEM87B Silent p.N151N 0.32 TCGA-BR-4363-01 2 120438597 120438597 G A TMEM177 Silent p.P56P 0.29 TCGA-BR-4363-01 2 132237023 132237023 C T TUBA3D Silent p.R123R 0.28 TCGA-BR-4363-01 2 136393550 136393550 T C R3HDM1 Silent p.F263F 0.38 TCGA-BR-4363-01 2 136602247 136602247 G A MCM6 Silent p.D739D 0.26 TCGA-BR-4363-01 2 148683686 148683686 A - ACVR2A Frame_Shift_Del p.K437Rfs*5 0.34 TCGA-BR-4363-01 2 152324577 152324577 C T RIF1 Missense_Mutation p.R2222W 0.32 deleterious(0) probably_damaging(0.999) TCGA-BR-4363-01 2 152363488 152363488 T - NEB Frame_Shift_Del p.I7831Lfs*13 0.25 TCGA-BR-4363-01 2 157186441 157186441 C T NR4A2 Silent p.Q86Q 0.28 TCGA-BR-4363-01 2 160798419 160798419 T C PLA2R1 Missense_Mutation p.Y1421C 0.29 deleterious(0) possibly_damaging(0.838) TCGA-BR-4363-01 2 168100214 168100214 G A XIRP2 Missense_Mutation p.R771Q 0.27 probably_damaging(1) TCGA-BR-4363-01 2 170059292 170059292 C A LRP2 Missense_Mutation p.G2728V 0.06 probably_damaging(0.949) TCGA-BR-4363-01 2 17847726 17847726 C T SMC6 Missense_Mutation p.R1041H 0.14 tolerated(0.34) benign(0.035) TCGA-BR-4363-01 2 179395182 179395182 G A TTN Missense_Mutation p.S35387L 0.35 TCGA-BR-4363-01 2 179580341 179580341 G A TTN Silent p.F8600F 0.35 TCGA-BR-4363-01 2 179667001 179667001 G A TTN Silent p.G53G 0.23 TCGA-BR-4363-01 2 188217046 188217046 A - CALCRL Frame_Shift_Del p.F308Sfs*3 0.26 TCGA-BR-4363-01 2 201284108 201284108 G A SPATS2L Missense_Mutation p.E112K 0.16 tolerated(0.56) possibly_damaging(0.574) TCGA-BR-4363-01 2 201369472 201369472 T - KCTD18 Frame_Shift_Del p.K124Rfs*3 0.28 TCGA-BR-4363-01 2 202131514 202131514 G T CASP8 Missense_Mutation p.R161M 0.29 deleterious(0) probably_damaging(0.998) TCGA-BR-4363-01 2 20402399 20402399 G A SDC1 3'UTR 0.42 TCGA-BR-4363-01 2 20990057 20990057 C T C2orf43 Missense_Mutation p.A86T 0.37 deleterious(0.03) benign(0.071) TCGA-BR-4363-01 2 21001136 21001136 G A C2orf43 Missense_Mutation p.P30S 0.29 tolerated(0.09) possibly_damaging(0.87) TCGA-BR-4363-01 2 219920518 219920518 G A IHH Missense_Mutation p.A216V 0.33 tolerated(0.56) benign(0.019) TCGA-BR-4363-01 2 220344783 220344783 T C SPEG Missense_Mutation p.Y1755H 0.28 probably_damaging(0.998) TCGA-BR-4363-01 2 220420875 220420875 G A OBSL1 Silent p.H1492H 0.35 TCGA-BR-4363-01 2 223553100 223553100 A G MOGAT1 Missense_Mutation p.I44M 0.21 deleterious(0.02) benign(0.238) TCGA-BR-4363-01 2 234652578 234652578 C T UGT1A10 Intron 0.34 TCGA-BR-4363-01 2 239079047 239079047 A - ILKAP 3'UTR 0.33 TCGA-BR-4363-01 2 242129505 242129505 G T ANO7 Missense_Mutation p.E63D 0.40 tolerated(0.18) benign(0.034) TCGA-BR-4363-01 2 26174773 26174773 A G KIF3C Missense_Mutation p.Y631H 0.39 benign(0.004) TCGA-BR-4363-01 2 27446475 27446475 C A CAD Missense_Mutation p.S285Y 0.28 deleterious(0) possibly_damaging(0.823) TCGA-BR-4363-01 2 27887073 27887073 C - SLC4A1AP Frame_Shift_Del p.Y154Tfs*16 0.32 TCGA-BR-4363-01 2 31154985 31154985 C T GALNT14 Missense_Mutation p.R341Q 0.32 deleterious(0) probably_damaging(1) TCGA-BR-4363-01 2 33783395 33783395 T C RASGRP3 Missense_Mutation p.L566P 0.26 tolerated(0.27) possibly_damaging(0.824) TCGA-BR-4363-01 2 42990108 42990108 T C OXER1 Missense_Mutation p.I404M 0.26 tolerated(0.08) benign(0.002) TCGA-BR-4363-01 2 54081206 54081206 G A GPR75 Missense_Mutation p.R230W 0.32 deleterious(0) benign(0.001) TCGA-BR-4363-01 2 61416142 61416142 T C USP34 Silent p.L3312L 0.09 TCGA-BR-4363-01 2 70392254 70392254 C A C2orf42 Silent p.L441L 0.25 TCGA-BR-4363-01 2 70408792 70408792 T C C2orf42 Missense_Mutation p.Q109R 0.29 tolerated(0.51) probably_damaging(0.979) TCGA-BR-4363-01 2 71766292 71766292 G A DYSF Missense_Mutation p.R500H 0.30 deleterious(0) probably_damaging(0.954) TCGA-BR-4363-01 2 85835992 85835992 C - C2orf68 3'UTR 0.29 TCGA-BR-4363-01 2 86352984 86352984 A - PTCD3 Frame_Shift_Del p.K312Nfs*9 0.23 TCGA-BR-4363-01 2 86683981 86683981 C T KDM3A Silent p.H245H 0.26 TCGA-BR-4363-01 3 10078012 10078012 T - FANCD2 Frame_Shift_Del p.F162Lfs*19 0.21 TCGA-BR-4363-01 3 101574616 101574616 C A NFKBIZ Missense_Mutation p.A565D 0.05 deleterious(0.01) benign(0.217) TCGA-BR-4363-01 3 10312453 10312453 A T TATDN2 Missense_Mutation p.E529D 0.25 deleterious(0.01) probably_damaging(0.934) TCGA-BR-4363-01 3 10442673 10442673 G A ATP2B2 Missense_Mutation p.R249C 0.30 deleterious(0.02) probably_damaging(0.912) TCGA-BR-4363-01 3 108634981 108634981 G A GUCA1C Silent p.N145N 0.35 TCGA-BR-4363-01 3 111766802 111766802 G A TMPRSS7 Missense_Mutation p.S190N 0.32 tolerated(0.14) benign(0.038) TCGA-BR-4363-01 3 113508677 113508680 TATT - ATP6V1A Frame_Shift_Del p.Y328Lfs*18 0.41 TCGA-BR-4363-01 3 121981056 121981056 C T CASR Nonsense_Mutation p.R392* 0.28 TCGA-BR-4363-01 3 123044231 123044231 C - ADCY5 Frame_Shift_Del p.A676Lfs*18 0.31 TCGA-BR-4363-01 3 12434182 12434182 A - PPARG Frame_Shift_Del p.S186Vfs*47 0.22 TCGA-BR-4363-01 3 124732092 124732092 G A HEG1 Silent p.D777D 0.30 TCGA-BR-4363-01 3 124952717 124952718 - T ZNF148 Frame_Shift_Ins p.L285Tfs*3 0.25 TCGA-BR-4363-01 3 12645699 12645699 G A RAF1 Missense_Mutation p.S257L 0.21 deleterious(0.01) benign(0.226) TCGA-BR-4363-01 3 128629083 128629083 G A RP11-723O4.6 3'UTR 0.21 TCGA-BR-4363-01 3 134348463 134348463 G A KY Missense_Mutation p.R113C 0.31 tolerated_low_confidence(0.08) benign(0.003) TCGA-BR-4363-01 3 134960059 134960059 G A EPHB1 Missense_Mutation p.D806N 0.29 deleterious(0) probably_damaging(0.999) TCGA-BR-4363-01 3 13679190 13679190 C T FBLN2 Missense_Mutation p.A1156V 0.40 tolerated(0.31) benign(0.019) TCGA-BR-4363-01 3 146307501 146307501 T C PLSCR5 Missense_Mutation p.H239R 0.28 deleterious(0.03) benign(0.438) TCGA-BR-4363-01 3 147128660 147128660 C T ZIC1 Missense_Mutation p.T254M 0.25 deleterious(0) probably_damaging(0.999) TCGA-BR-4363-01 3 150845627 150845627 A - MED12L Frame_Shift_Del p.E140Rfs*7 0.29 TCGA-BR-4363-01 3 151093846 151093846 T C MED12L Silent p.P1264P 0.27 TCGA-BR-4363-01 3 153973130 153973130 G - ARHGEF26 Frame_Shift_Del p.E830Nfs*19 0.31 TCGA-BR-4363-01 3 155206450 155206450 A G PLCH1 Silent p.P834P 0.17 TCGA-BR-4363-01 3 169572662 169572662 C A LRRC31 Missense_Mutation p.K310N 0.05 tolerated(0.05) benign(0.365) TCGA-BR-4363-01 3 179474898 179474898 C A USP13 Intron 0.31 TCGA-BR-4363-01 3 185407313 185407313 G T IGF2BP2 Silent p.A169A 0.06 TCGA-BR-4363-01 3 25835771 25835771 C T OXSM Missense_Mutation p.A389V 0.26 deleterious(0) probably_damaging(0.959) TCGA-BR-4363-01 3 38936341 38936341 G A SCN11A Missense_Mutation p.R840C 0.42 tolerated(0.08) benign(0.007) TCGA-BR-4363-01 3 38951623 38951623 A - SCN11A Frame_Shift_Del p.F345Lfs*11 0.41 TCGA-BR-4363-01 3 44598446 44598446 C A ZKSCAN7 5'UTR 0.43 TCGA-BR-4363-01 3 49051382 49051382 G - WDR6 Frame_Shift_Del p.R838Gfs*33 0.41 TCGA-BR-4363-01 3 49568688 49568688 A - DAG1 Frame_Shift_Del p.K250Rfs*17 0.51 TCGA-BR-4363-01 3 49568877 49568877 G A DAG1 Silent p.R311R 0.05 TCGA-BR-4363-01 3 50332546 50332546 T G HYAL3 Missense_Mutation p.Q163P 0.32 tolerated(0.15) possibly_damaging(0.811) TCGA-BR-4363-01 3 52257641 52257641 G A TLR9 Missense_Mutation p.R385C 0.39 deleterious(0.02) possibly_damaging(0.655) TCGA-BR-4363-01 3 57493550 57493550 A G DNAH12 Silent p.I239I 0.24 TCGA-BR-4363-01 3 69104477 69104477 A - UBA3 3'UTR 0.60 TCGA-BR-4363-01 4 100479282 100479282 C T TRMT10A Missense_Mutation p.R91H 0.38 deleterious(0.05) probably_damaging(0.964) TCGA-BR-4363-01 4 110681532 110681532 G A CFI Silent p.C259C 0.10 TCGA-BR-4363-01 4 122257967 122257967 G A QRFPR Missense_Mutation p.L186F 0.25 deleterious(0) possibly_damaging(0.771) TCGA-BR-4363-01 4 122602903 122602903 T C ANXA5 Missense_Mutation p.N106S 0.26 tolerated(0.08) benign(0.001) TCGA-BR-4363-01 4 123192637 123192637 G A KIAA1109 Missense_Mutation p.R2653Q 0.19 possibly_damaging(0.889) TCGA-BR-4363-01 4 128951846 128951846 A G C4orf29 3'UTR 0.27 TCGA-BR-4363-01 4 129783052 129783052 C - JADE1 Frame_Shift_Del p.R394Gfs*20 0.22 TCGA-BR-4363-01 4 143094842 143094842 A G INPP4B Silent p.S434S 0.26 TCGA-BR-4363-01 4 146058514 146058514 T - OTUD4 3'UTR 0.15 TCGA-BR-4363-01 4 149356493 149356493 C T NR3C2 Missense_Mutation p.S507N 0.31 tolerated(0.49) possibly_damaging(0.483) TCGA-BR-4363-01 4 155720669 155720669 T C RBM46 Missense_Mutation p.L452S 0.24 deleterious(0) benign(0.227) TCGA-BR-4363-01 4 166388881 166388881 C T CPE Silent p.A182A 0.31 TCGA-BR-4363-01 4 175220290 175220290 A - CEP44 Frame_Shift_Del p.R8Efs*6 0.25 TCGA-BR-4363-01 4 186997931 186997931 T C TLR3 Missense_Mutation p.I53T 0.35 tolerated(0.08) probably_damaging(1) TCGA-BR-4363-01 4 2698177 2698177 A - FAM193A Frame_Shift_Del p.M833Wfs*23 0.33 TCGA-BR-4363-01 4 3136230 3136230 A G HTT Missense_Mutation p.T866A 0.07 possibly_damaging(0.566) TCGA-BR-4363-01 4 39116879 39116879 G - KLHL5 Frame_Shift_Del p.Y716Mfs*28 0.26 TCGA-BR-4363-01 4 57354156 57354156 G T SRP72 Nonsense_Mutation p.E401* 0.37 TCGA-BR-4363-01 4 57797557 57797557 G A REST Missense_Mutation p.V845I 0.33 deleterious(0) probably_damaging(0.952) TCGA-BR-4363-01 4 7056038 7056038 G A TADA2B Missense_Mutation p.E174K 0.27 deleterious(0) possibly_damaging(0.855) TCGA-BR-4363-01 4 71024318 71024318 T - C4orf40 Frame_Shift_Del p.S119Qfs*26 0.23 TCGA-BR-4363-01 4 74005551 74005551 G A ANKRD17 Missense_Mutation p.R928W 0.29 possibly_damaging(0.539) TCGA-BR-4363-01 4 8368524 8368524 T C ACOX3 3'UTR 0.29 TCGA-BR-4363-01 4 84370031 84370031 T G HELQ Missense_Mutation p.T366P 0.32 deleterious(0) probably_damaging(0.999) TCGA-BR-4363-01 4 85414492 85414492 C T NKX6-1 Missense_Mutation p.G352S 0.39 tolerated_low_confidence(0.19) unknown(0) TCGA-BR-4363-01 4 85676452 85676453 - A WDFY3 Frame_Shift_Ins p.L1842Ffs*52 0.22 TCGA-BR-4363-01 4 86916554 86916554 T - ARHGAP24 Frame_Shift_Del p.F584Lfs*64 0.25 TCGA-BR-4363-01 4 88414917 88414917 G A SPARCL1 Silent p.G345G 0.37 TCGA-BR-4363-01 4 88583274 88583274 G A DMP1 Missense_Mutation p.G115D 0.42 deleterious(0.03) probably_damaging(1) TCGA-BR-4363-01 5 118465026 118465026 T - DMXL1 Frame_Shift_Del p.L410Yfs*17 0.27 TCGA-BR-4363-01 5 124036925 124036925 G A ZNF608 Missense_Mutation p.P315L 0.31 tolerated(0.06) probably_damaging(0.982) TCGA-BR-4363-01 5 132560966 132560966 G A FSTL4 Silent p.S396S 0.26 TCGA-BR-4363-01 5 134871302 134871302 T C NEUROG1 Missense_Mutation p.T27A 0.21 deleterious(0.03) possibly_damaging(0.85) TCGA-BR-4363-01 5 136964109 136964109 C T KLHL3 Missense_Mutation p.G490R 0.26 deleterious(0) probably_damaging(0.968) TCGA-BR-4363-01 5 137275736 137275736 C A FAM13B 3'UTR 0.30 TCGA-BR-4363-01 5 13928247 13928247 C T DNAH5 Missense_Mutation p.R78Q 0.24 benign(0.238) TCGA-BR-4363-01 5 140182453 140182453 C T PCDHA3 Silent p.D557D 0.29 TCGA-BR-4363-01 5 140250586 140250586 C T PCDHA11 Missense_Mutation p.T633M 0.31 deleterious_low_confidence(0.04) benign(0.418) TCGA-BR-4363-01 5 140264030 140264030 C T PCDHA13 Missense_Mutation p.P726L 0.05 tolerated_low_confidence(0.12) benign(0.002) TCGA-BR-4363-01 5 140482030 140482030 C T PCDHB3 Silent p.N599N 0.20 TCGA-BR-4363-01 5 140515675 140515675 C T PCDHB5 Missense_Mutation p.P220L 0.38 deleterious_low_confidence(0.02) possibly_damaging(0.616) TCGA-BR-4363-01 5 140554821 140554821 C T PCDHB7 3'UTR 0.09 TCGA-BR-4363-01 5 140563517 140563517 C T PCDHB16 Silent p.R461R 0.25 TCGA-BR-4363-01 5 140604527 140604527 G A PCDHB14 Missense_Mutation p.A484T 0.33 deleterious_low_confidence(0) benign(0.386) TCGA-BR-4363-01 5 140724254 140724254 C T PCDHGA3 Silent p.G218G 0.23 TCGA-BR-4363-01 5 140724659 140724659 A G PCDHGA3 Silent p.T353T 0.30 TCGA-BR-4363-01 5 140857728 140857728 C - PCDHGC3 Frame_Shift_Del p.R684Gfs*15 0.27 TCGA-BR-4363-01 5 14477004 14477004 T - TRIO Frame_Shift_Del p.L2031* 0.38 TCGA-BR-4363-01 5 145838686 145838686 G A TCERG1 Silent p.Q226Q 0.26 TCGA-BR-4363-01 5 148980674 148980674 C T ARHGEF37 Missense_Mutation p.P64S 0.28 deleterious(0.01) probably_damaging(0.997) TCGA-BR-4363-01 5 150072483 150072483 G - RBM22 Frame_Shift_Del p.P369Lfs*94 0.29 TCGA-BR-4363-01 5 15936714 15936714 C T FBXL7 Nonsense_Mutation p.Q299* 0.28 TCGA-BR-4363-01 5 161113339 161113339 C T GABRA6 Missense_Mutation p.R48W 0.22 deleterious(0) probably_damaging(0.999) TCGA-BR-4363-01 5 167673994 167673994 A G TENM2 Missense_Mutation p.Q2017R 0.25 tolerated(1) benign(0.001) TCGA-BR-4363-01 5 169805926 169805926 C T KCNMB1 Missense_Mutation p.V120M 0.37 deleterious(0.02) probably_damaging(1) TCGA-BR-4363-01 5 173359456 173359456 G A CPEB4 Missense_Mutation p.R404H 0.24 tolerated_low_confidence(0.11) benign(0.002) TCGA-BR-4363-01 5 179034632 179034634 AGA - RUFY1 In_Frame_Del p.K653del 0.29 TCGA-BR-4363-01 5 179195922 179195922 C T MAML1 Silent p.S601S 0.23 TCGA-BR-4363-01 5 34004802 34004802 C T AMACR Silent p.P143P 0.33 TCGA-BR-4363-01 5 43173517 43173517 A - ZNF131 Frame_Shift_Del p.G353Efs*26 0.23 TCGA-BR-4363-01 5 65350394 65350394 C - ERBB2IP Frame_Shift_Del p.T1083Kfs*4 0.09 TCGA-BR-4363-01 5 76728856 76728856 A - WDR41 3'UTR 0.28 TCGA-BR-4363-01 5 80550869 80550869 C T CKMT2 Missense_Mutation p.R169C 0.23 deleterious(0) probably_damaging(1) TCGA-BR-4363-01 5 86564685 86564686 - C RASA1 Frame_Shift_Ins p.Y142Lfs*16 0.26 TCGA-BR-4363-01 5 90000297 90000297 G T GPR98 Missense_Mutation p.R2793M 0.24 benign(0.001) TCGA-BR-4363-01 6 100368816 100368816 C T MCHR2 Silent p.%3D 0.20 TCGA-BR-4363-01 6 105825262 105825262 G A PREP Missense_Mutation p.R85W 0.25 deleterious(0.02) possibly_damaging(0.572) TCGA-BR-4363-01 6 107956521 107956521 G A SOBP Missense_Mutation p.G825S 0.32 deleterious(0.04) probably_damaging(0.999) TCGA-BR-4363-01 6 111995792 111995792 G T FYN Missense_Mutation p.L439M 0.28 tolerated(0.23) possibly_damaging(0.874) TCGA-BR-4363-01 6 114378456 114378456 A - HS3ST5 Frame_Shift_Del p.Y336Tfs*8 0.27 TCGA-BR-4363-01 6 116580028 116580028 C T TSPYL4 5'Flank 0.35 TCGA-BR-4363-01 6 116949263 116949263 C T RSPH4A Nonsense_Mutation p.R465* 0.25 TCGA-BR-4363-01 6 119345681 119345681 T C FAM184A Missense_Mutation p.T153A 0.29 tolerated(0.33) benign(0.444) TCGA-BR-4363-01 6 12122268 12122268 G A HIVEP1 Missense_Mutation p.R747Q 0.36 deleterious(0) probably_damaging(0.999) TCGA-BR-4363-01 6 121768435 121768435 C T GJA1 Nonsense_Mutation p.R148* 0.25 TCGA-BR-4363-01 6 131914220 131914223 AGTA C MED23 In_Frame_Del p.T1108del 0.36 TCGA-BR-4363-01 6 132185669 132185669 T G ENPP1 Missense_Mutation p.I350S 0.25 deleterious(0) possibly_damaging(0.826) TCGA-BR-4363-01 6 132966641 132966641 C T TAAR1 Missense_Mutation p.A168T 0.23 tolerated(0.29) benign(0.004) TCGA-BR-4363-01 6 146673425 146673425 A T GRM1 Missense_Mutation p.K409M 0.34 deleterious(0) probably_damaging(1) TCGA-BR-4363-01 6 152740715 152740715 T A SYNE1 Missense_Mutation p.T1804S 0.32 benign(0) TCGA-BR-4363-01 6 152740727 152740727 G A SYNE1 Nonsense_Mutation p.Q1800* 0.36 TCGA-BR-4363-01 6 152783720 152783720 T - SYNE1 Intron 0.31 TCGA-BR-4363-01 6 15511598 15511598 C - JARID2 Frame_Shift_Del p.P974Qfs*11 0.50 TCGA-BR-4363-01 6 157522190 157522190 C - ARID1B Frame_Shift_Del p.P1489Lfs*5 0.36 TCGA-BR-4363-01 6 158349639 158349639 A C SNX9 Missense_Mutation p.K398T 0.14 deleterious(0) benign(0.017) TCGA-BR-4363-01 6 167721271 167721271 G A UNC93A Silent p.A327A 0.25 TCGA-BR-4363-01 6 21231094 21231094 C T CDKAL1 Missense_Mutation p.L522F 0.46 tolerated(0.7) benign(0.002) TCGA-BR-4363-01 6 24533964 24533964 T A ALDH5A1 3'UTR 0.41 TCGA-BR-4363-01 6 26240923 26240923 G A HIST1H4F Silent p.A90A 0.42 TCGA-BR-4363-01 6 29408587 29408587 C T OR10C1 Silent p.Y265Y 0.43 TCGA-BR-4363-01 6 29527570 29527570 A G UBD 5'UTR 0.47 TCGA-BR-4363-01 6 30128498 30128498 T C TRIM10 Missense_Mutation p.I46M 0.36 tolerated(0.23) possibly_damaging(0.699) TCGA-BR-4363-01 6 31322269 31322270 GA - HLA-B Frame_Shift_Del p.L360Hfs*39 0.36 TCGA-BR-4363-01 6 34029800 34029800 C T GRM4 Missense_Mutation p.V248M 0.44 deleterious(0) possibly_damaging(0.563) TCGA-BR-4363-01 6 35096881 35096882 - G TCP11 Frame_Shift_Ins p.D119* 0.27 TCGA-BR-4363-01 6 37250063 37250063 C - TBC1D22B Frame_Shift_Del p.P177Qfs*2 0.42 TCGA-BR-4363-01 6 41752759 41752759 G - PRICKLE4 Frame_Shift_Del p.V111* 0.32 TCGA-BR-4363-01 6 54095592 54095592 G A MLIP Silent p.L398L 0.47 TCGA-BR-4363-01 6 70639396 70639396 T - COL19A1 Frame_Shift_Del p.F158Lfs*34 0.34 TCGA-BR-4363-01 6 74111617 74111617 A C DDX43 Missense_Mutation p.S158R 0.07 tolerated(0.47) benign(0.005) TCGA-BR-4363-01 6 75853001 75853001 A G COL12A1 Silent p.V1598V 0.27 TCGA-BR-4363-01 6 88318838 88318838 A - ORC3 Frame_Shift_Del p.R204Gfs*16 0.30 TCGA-BR-4363-01 6 96986656 96986656 C - UFL1 Frame_Shift_Del p.R377Vfs*3 0.28 TCGA-BR-4363-01 7 100028448 100028448 C T MEPCE Silent p.H269H 0.32 TCGA-BR-4363-01 7 100162615 100162615 C T AGFG2 3'UTR 0.27 TCGA-BR-4363-01 7 100281778 100281778 C T GIGYF1 Missense_Mutation p.R578H 0.30 tolerated(0.17) unknown(0) TCGA-BR-4363-01 7 100463572 100463572 T C SLC12A9 Missense_Mutation p.V697A 0.07 deleterious(0) possibly_damaging(0.83) TCGA-BR-4363-01 7 103293015 103293015 C T RELN Silent p.T582T 0.15 TCGA-BR-4363-01 7 103844608 103844608 C T ORC5 Silent p.T49T 0.28 TCGA-BR-4363-01 7 105891627 105891627 T C NAMPT Missense_Mutation p.T460A 0.31 tolerated(0.05) benign(0.092) TCGA-BR-4363-01 7 127953322 127953322 C T RBM28 Missense_Mutation p.R684Q 0.29 deleterious(0.01) probably_damaging(0.996) TCGA-BR-4363-01 7 142965961 142965961 A - GSTK1 3'UTR 0.41 TCGA-BR-4363-01 7 143079975 143079975 G A ZYX Missense_Mutation p.A195T 0.23 tolerated(0.13) possibly_damaging(0.63) TCGA-BR-4363-01 7 143091370 143091370 T C EPHA1 Missense_Mutation p.S807G 0.37 deleterious(0) probably_damaging(0.999) TCGA-BR-4363-01 7 143658000 143658000 T C OR2F1 Missense_Mutation p.S313P 0.35 tolerated(0.06) benign(0.033) TCGA-BR-4363-01 7 149544928 149544928 A G ZNF862 Missense_Mutation p.S116G 0.15 tolerated_low_confidence(0.08) benign(0.031) TCGA-BR-4363-01 7 150094965 150094965 C T ZNF775 Missense_Mutation p.R466C 0.24 deleterious(0) probably_damaging(0.999) TCGA-BR-4363-01 7 150759058 150759058 A G SLC4A2 5'UTR 0.14 TCGA-BR-4363-01 7 150937306 150937306 C T SMARCD3 Silent p.T355T 0.33 TCGA-BR-4363-01 7 151845524 151845524 A - KMT2C Frame_Shift_Del p.F4496Lfs*21 0.28 TCGA-BR-4363-01 7 156762298 156762298 C T NOM1 Silent p.N828N 0.30 TCGA-BR-4363-01 7 19185033 19185033 G A FERD3L 5'UTR 0.22 TCGA-BR-4363-01 7 21939646 21939646 C T DNAH11 Missense_Mutation p.T4411M 0.31 benign(0.002) TCGA-BR-4363-01 7 30088859 30088859 C T PLEKHA8 Missense_Mutation p.T153I 0.28 deleterious(0.03) benign(0.181) TCGA-BR-4363-01 7 37956066 37956066 T A SFRP4 Missense_Mutation p.E25V 0.33 deleterious(0) probably_damaging(0.986) TCGA-BR-4363-01 7 43532713 43532713 G A HECW1 Missense_Mutation p.R1124H 0.38 deleterious(0.01) probably_damaging(0.994) TCGA-BR-4363-01 7 43664348 43664348 T A STK17A Silent p.S384S 0.34 TCGA-BR-4363-01 7 47408673 47408673 C T TNS3 Missense_Mutation p.G524S 0.24 deleterious(0.04) benign(0.371) TCGA-BR-4363-01 7 49977050 49977050 A G ZPBP 3'UTR 0.38 TCGA-BR-4363-01 7 53104085 53104085 G A POM121L12 Missense_Mutation p.G241S 0.31 tolerated(0.9) probably_damaging(0.972) TCGA-BR-4363-01 7 66648139 66648139 G A TYW1 Silent p.T575T 0.20 TCGA-BR-4363-01 7 73279550 73279550 T C WBSCR28 Silent p.A100A 0.30 TCGA-BR-4363-01 7 87032452 87032452 T - ABCB4 Frame_Shift_Del p.K1218Rfs*18 0.29 TCGA-BR-4363-01 7 889612 889612 G A SUN1 Intron 0.35 TCGA-BR-4363-01 7 92987862 92987862 T - CCDC132 3'UTR 0.28 TCGA-BR-4363-01 7 98581951 98581951 A G TRRAP Silent p.A3090A 0.21 TCGA-BR-4363-01 8 109247236 109247236 A - EIF3E Frame_Shift_Del p.F154Lfs*13 0.21 TCGA-BR-4363-01 8 11282089 11282089 G A FAM167A Silent p.G146G 0.28 TCGA-BR-4363-01 8 114186058 114186058 C T CSMD3 Missense_Mutation p.R201H 0.18 deleterious(0.04) possibly_damaging(0.652) TCGA-BR-4363-01 8 12040262 12040262 T C FAM86B1 3'UTR 0.12 TCGA-BR-4363-01 8 120797490 120797490 T - TAF2 Frame_Shift_Del p.I604Sfs*3 0.22 TCGA-BR-4363-01 8 122627103 122627103 T C HAS2 Missense_Mutation p.Q302R 0.18 deleterious(0.02) probably_damaging(0.999) TCGA-BR-4363-01 8 124195533 124195533 A G FAM83A Missense_Mutation p.N146S 0.12 tolerated(0.15) benign(0.107) TCGA-BR-4363-01 8 125580781 125580782 - A MTSS1 Intron 0.40 TCGA-BR-4363-01 8 139158276 139158276 G A FAM135B Missense_Mutation p.R1156W 0.22 deleterious(0) probably_damaging(0.998) TCGA-BR-4363-01 8 144663405 144663405 G A EEF1D Missense_Mutation p.R461C 0.15 deleterious(0.01) probably_damaging(0.973) TCGA-BR-4363-01 8 144996079 144996079 G A PLEC Missense_Mutation p.A2774V 0.17 benign(0.087) TCGA-BR-4363-01 8 145649364 145649364 C T VPS28 Missense_Mutation p.R203Q 0.18 tolerated_low_confidence(1) benign(0) TCGA-BR-4363-01 8 17125856 17125856 A G VPS37A Missense_Mutation p.Y97C 0.22 deleterious(0.03) benign(0.019) TCGA-BR-4363-01 8 20008200 20008200 A G SLC18A1 Silent p.G357G 0.23 TCGA-BR-4363-01 8 20110677 20110677 G - LZTS1 Frame_Shift_Del p.I256Sfs*98 0.19 TCGA-BR-4363-01 8 25199933 25199933 T G DOCK5 Missense_Mutation p.F843V 0.36 deleterious(0) possibly_damaging(0.493) TCGA-BR-4363-01 8 25290078 25290078 T - KCTD9 Frame_Shift_Del p.N332Mfs*4 0.26 TCGA-BR-4363-01 8 25293788 25293788 A - KCTD9 Frame_Shift_Del p.L209Cfs*2 0.25 TCGA-BR-4363-01 8 30209973 30209973 C A TUBBP1 RNA 0.31 TCGA-BR-4363-01 8 33449454 33449454 G A DUSP26 3'UTR 0.48 TCGA-BR-4363-01 8 42213041 42213041 A - POLB Frame_Shift_Del p.N128Mfs*5 0.21 TCGA-BR-4363-01 8 56435947 56435947 G A XKR4 Missense_Mutation p.V372I 0.58 deleterious(0.04) possibly_damaging(0.688) TCGA-BR-4363-01 8 56986697 56986697 T - RPS20 Frame_Shift_Del p.T9Hfs*16 0.26 TCGA-BR-4363-01 8 6360544 6360544 C T ANGPT2 3'UTR 0.21 TCGA-BR-4363-01 8 67547095 67547095 C T VCPIP1 Missense_Mutation p.A1104T 0.22 tolerated_low_confidence(0.06) benign(0.214) TCGA-BR-4363-01 8 72184073 72184073 G A EYA1 Missense_Mutation p.R296C 0.18 tolerated(0.3) probably_damaging(0.939) TCGA-BR-4363-01 8 75276702 75276703 - T GDAP1 3'UTR 0.32 TCGA-BR-4363-01 8 76456180 76456180 C T HNF4G Missense_Mutation p.R75C 0.55 deleterious(0) probably_damaging(0.999) TCGA-BR-4363-01 8 77764274 77764274 C A ZFHX4 Missense_Mutation p.A1706D 0.20 possibly_damaging(0.82) TCGA-BR-4363-01 8 8176270 8176270 C T SGK223 Silent p.L1205L 0.38 TCGA-BR-4363-01 8 8185860 8185860 G - SGK223 Frame_Shift_Del p.P811Lfs*8 0.09 TCGA-BR-4363-01 8 87229783 87229784 - A SLC7A13 Frame_Shift_Ins p.T366Hfs*28 0.49 TCGA-BR-4363-01 8 87560586 87560586 T C CPNE3 Missense_Mutation p.Y313H 0.16 deleterious(0.04) benign(0.019) TCGA-BR-4363-01 8 94828720 94828720 G T TMEM67 3'UTR 0.17 TCGA-BR-4363-01 8 94934286 94934286 C T PDP1 Missense_Mutation p.A25V 0.50 deleterious_low_confidence(0) possibly_damaging(0.739) TCGA-BR-4363-01 8 95686611 95686611 A - ESRP1 Frame_Shift_Del p.N512Tfs*2 0.59 TCGA-BR-4363-01 9 103111633 103111633 T - TEX10 Frame_Shift_Del p.R5Efs*10 0.25 TCGA-BR-4363-01 9 103213137 103213137 A - MSANTD3 Frame_Shift_Del p.M241Wfs*44 0.28 TCGA-BR-4363-01 9 112207535 112207535 A T PTPN3 Missense_Mutation p.S151T 0.23 deleterious(0.04) probably_damaging(0.969) TCGA-BR-4363-01 9 124535255 124535255 G A DAB2IP Silent p.A788A 0.23 TCGA-BR-4363-01 9 130502091 130502091 T C SH2D3C Silent p.P759P 0.39 TCGA-BR-4363-01 9 131396974 131396974 A G WDR34 Missense_Mutation p.F403S 0.23 deleterious(0) probably_damaging(0.995) TCGA-BR-4363-01 9 134400578 134400578 T C UCK1 Missense_Mutation p.Q233R 0.32 tolerated(0.47) benign(0.023) TCGA-BR-4363-01 9 135201742 135201742 A - SETX Frame_Shift_Del p.F1748Sfs*3 0.20 TCGA-BR-4363-01 9 135753607 135753607 G - AK8 Frame_Shift_Del p.E13Rfs*14 0.27 TCGA-BR-4363-01 9 137019598 137019598 C - WDR5 Frame_Shift_Del p.V217Cfs*4 0.36 TCGA-BR-4363-01 9 137642389 137642390 - C COL5A1 Frame_Shift_Ins p.G502Wfs*114 0.30 TCGA-BR-4363-01 9 137710590 137710590 G A COL5A1 Missense_Mutation p.R1440Q 0.38 unknown(0) TCGA-BR-4363-01 9 137716476 137716476 C T COL5A1 Missense_Mutation p.P1577S 0.41 unknown(0) TCGA-BR-4363-01 9 137727007 137727007 A G COL5A1 Missense_Mutation p.Y1776C 0.35 unknown(0) TCGA-BR-4363-01 9 140707505 140707506 GA - EHMT1 Frame_Shift_Del p.E973Dfs*203 0.23 TCGA-BR-4363-01 9 15468838 15468838 G A PSIP1 Missense_Mutation p.R404W 0.29 deleterious(0) probably_damaging(0.998) TCGA-BR-4363-01 9 21367521 21367521 A G IFNA13 Silent p.C163C 0.21 TCGA-BR-4363-01 9 3277341 3277342 - A RFX3 Frame_Shift_Ins p.L324Ffs*14 0.27 TCGA-BR-4363-01 9 33115994 33115994 A - B4GALT1 Frame_Shift_Del p.F318Lfs*4 0.29 TCGA-BR-4363-01 9 332451 332451 G A DOCK8 Silent p.T366T 0.32 TCGA-BR-4363-01 9 33676625 33676625 C T PTENP1 RNA 0.32 TCGA-BR-4363-01 9 34564807 34564807 G A CNTFR Missense_Mutation p.R37C 0.34 deleterious(0) possibly_damaging(0.899) TCGA-BR-4363-01 9 34997369 34997369 A - DNAJB5 3'UTR 0.50 TCGA-BR-4363-01 9 35557979 35557979 G A RUSC2 Missense_Mutation p.G1018R 0.20 deleterious(0.02) probably_damaging(1) TCGA-BR-4363-01 9 414890 414890 C T DOCK8 Silent p.A1213A 0.34 TCGA-BR-4363-01 9 5185595 5185595 C T INSL6 Missense_Mutation p.R3Q 0.33 tolerated(0.24) possibly_damaging(0.602) TCGA-BR-4363-01 9 88631578 88631578 A - NAA35 Frame_Shift_Del p.K567Rfs*6 0.25 TCGA-BR-4363-01 9 95738590 95738590 G T FGD3 Missense_Mutation p.G18W 0.42 deleterious_low_confidence(0) possibly_damaging(0.855) TCGA-BR-4363-01 9 96080715 96080715 C T C9orf129 Missense_Mutation p.A186T 0.27 deleterious_low_confidence(0) possibly_damaging(0.682) TCGA-BR-4363-01 9 96437269 96437269 G T PHF2 Missense_Mutation p.R896M 0.20 deleterious(0) unknown(0) TCGA-BR-4363-01 9 991049 991049 T - DMRT3 3'UTR 0.26 TCGA-BR-4363-01 X 100099016 100099016 C T NOX1 Silent p.L540L 0.24 TCGA-BR-4363-01 X 106846277 106846277 A G FRMPD3 Missense_Mutation p.I1703V 0.50 deleterious(0.01) benign(0.128) TCGA-BR-4363-01 X 110489890 110489890 C T CAPN6 Missense_Mutation p.R614H 0.05 tolerated(0.13) possibly_damaging(0.84) TCGA-BR-4363-01 X 118222233 118222233 C T KIAA1210 Missense_Mutation p.C987Y 0.22 tolerated(0.11) benign(0.131) TCGA-BR-4363-01 X 118767398 118767398 T - SEPT6 Frame_Shift_Del p.E339Kfs*4 0.23 TCGA-BR-4363-01 X 122319737 122319737 G A GRIA3 Missense_Mutation p.V55M 0.25 tolerated(0.32) probably_damaging(0.969) TCGA-BR-4363-01 X 122537342 122537342 A G GRIA3 Missense_Mutation p.N422S 0.24 deleterious(0) possibly_damaging(0.74) TCGA-BR-4363-01 X 125686634 125686634 G A DCAF12L1 5'UTR 0.33 TCGA-BR-4363-01 X 128890517 128890518 - G XPNPEP2 Frame_Shift_Ins p.Q454Afs*35 0.35 TCGA-BR-4363-01 X 128940083 128940083 G A ZDHHC9 3'UTR 0.46 TCGA-BR-4363-01 X 129147951 129147951 G A BCORL1 Silent p.T401T 0.21 TCGA-BR-4363-01 X 129370483 129370483 G A ZNF280C Silent p.G208G 0.21 TCGA-BR-4363-01 X 12940244 12940244 C T TLR8 Missense_Mutation p.R1029W 0.28 deleterious(0.03) probably_damaging(0.915) TCGA-BR-4363-01 X 135292049 135292049 T C FHL1 Missense_Mutation p.V303A 0.25 deleterious_low_confidence(0.05) benign(0.011) TCGA-BR-4363-01 X 135789067 135789067 C A ARHGEF6 Missense_Mutation p.S349I 0.23 deleterious(0) possibly_damaging(0.822) TCGA-BR-4363-01 X 13587944 13587944 G - EGFL6 5'UTR 0.34 TCGA-BR-4363-01 X 138724783 138724783 T G MCF2 Intron 0.09 TCGA-BR-4363-01 X 149945829 149945829 A G CD99L2 Intron 0.31 TCGA-BR-4363-01 X 151303089 151303089 T C MAGEA10 Missense_Mutation p.K335R 0.25 tolerated(1) benign(0.001) TCGA-BR-4363-01 X 152721808 152721808 G A HAUS7 Missense_Mutation p.A217V 0.23 tolerated(0.53) benign(0.006) TCGA-BR-4363-01 X 152813345 152813345 G A ATP2B3 Silent p.A337A 0.50 TCGA-BR-4363-01 X 152845813 152845813 C T ATP2B3 3'UTR 0.47 TCGA-BR-4363-01 X 153036432 153036432 T G PLXNB3 Missense_Mutation p.S740A 0.22 tolerated(0.39) benign(0.061) TCGA-BR-4363-01 X 153175711 153175711 C T ARHGAP4 Silent p.Q730Q 0.23 TCGA-BR-4363-01 X 153585838 153585838 C T FLNA Missense_Mutation p.V1637M 0.41 tolerated(0.16) benign(0.01) TCGA-BR-4363-01 X 16720875 16720875 A - CTPS2 Frame_Shift_Del p.S51Hfs*11 0.16 TCGA-BR-4363-01 X 18265925 18265926 GA - SCML2 Frame_Shift_Del p.P512* 0.18 TCGA-BR-4363-01 X 19031842 19031842 G A GPR64 Missense_Mutation p.A354V 0.25 tolerated(0.71) benign(0) TCGA-BR-4363-01 X 23801523 23801523 C T SAT1 Missense_Mutation p.R19W 0.19 deleterious(0) probably_damaging(0.991) TCGA-BR-4363-01 X 302052 302052 T - PPP2R3B Frame_Shift_Del p.T389Hfs*70 0.23 TCGA-BR-4363-01 X 37028447 37028447 G A FAM47C Missense_Mutation p.C655Y 0.20 tolerated(1) benign(0.253) TCGA-BR-4363-01 X 39916480 39916480 C - BCOR Frame_Shift_Del p.G1508Afs*60 0.22 TCGA-BR-4363-01 X 41207100 41207100 T - DDX3X 3'UTR 0.37 TCGA-BR-4363-01 X 44935952 44935952 A - KDM6A Frame_Shift_Del p.N906Mfs*31 0.30 TCGA-BR-4363-01 X 46508232 46508232 C T SLC9A7 Missense_Mutation p.V450I 0.16 tolerated(0.84) benign(0.007) TCGA-BR-4363-01 X 48776072 48776073 - G PIM2 Frame_Shift_Ins p.G14Rfs*27 0.25 TCGA-BR-4363-01 X 48826129 48826129 C T KCND1 Missense_Mutation p.A184T 0.35 tolerated(0.45) benign(0.007) TCGA-BR-4363-01 X 50085219 50085219 C T CCNB3 Missense_Mutation p.H1179Y 0.17 deleterious(0) probably_damaging(1) TCGA-BR-4363-01 X 53438754 53438754 T C SMC1A Missense_Mutation p.Q404R 0.20 deleterious(0.04) probably_damaging(0.995) TCGA-BR-4363-01 X 53600835 53600835 T C HUWE1 Missense_Mutation p.K2063E 0.22 probably_damaging(0.937) TCGA-BR-4363-01 X 54956889 54956889 T C TRO Silent p.G1244G 0.25 TCGA-BR-4363-01 X 57515386 57515387 - TG FAAH2 3'UTR 0.28 TCGA-BR-4363-01 X 62570788 62570788 T - SPIN4 5'UTR 0.19 TCGA-BR-4363-01 X 69509183 69509183 G A PDZD11 Silent p.S3S 0.13 TCGA-BR-4363-01 X 70327614 70327614 G - IL2RG Frame_Shift_Del p.P361Hfs*5 0.42 TCGA-BR-4363-01 X 70602920 70602920 G A TAF1 Missense_Mutation p.R638H 0.26 deleterious(0.01) benign(0.087) TCGA-BR-4363-01 X 83724526 83724526 C G HDX Missense_Mutation p.A69P 0.25 tolerated(0.22) benign(0.039) TCGA-BR-4363-01 X 86887291 86887291 T G KLHL4 Missense_Mutation p.F469C 0.04 deleterious(0.01) probably_damaging(1) TCGA-BR-4366-01 10 101421366 101421366 C G ENTPD7 Missense_Mutation p.R58G 0.24 tolerated(0.37) benign(0.002) TCGA-BR-4366-01 10 104241914 104241914 G A ACTR1A Missense_Mutation p.R257W 0.18 deleterious(0) probably_damaging(0.998) TCGA-BR-4366-01 10 124159876 124159876 G C PLEKHA1 Missense_Mutation p.K72N 0.61 deleterious(0) probably_damaging(0.999) TCGA-BR-4366-01 10 125434364 125434364 G A GPR26 Silent p.K233K 0.13 TCGA-BR-4366-01 10 135085440 135085440 C T ADAM8 Missense_Mutation p.V326M 0.26 tolerated(0.06) benign(0.197) TCGA-BR-4366-01 10 23321810 23321810 G A ARMC3 Missense_Mutation p.G756D 0.70 deleterious(0) probably_damaging(0.973) TCGA-BR-4366-01 11 100912766 100912766 G C PGR Silent p.L852L 0.32 TCGA-BR-4366-01 11 124413458 124413458 C A OR8B12 Silent p.L31L 0.32 TCGA-BR-4366-01 11 134131541 134131541 G C ACAD8 Intron 0.20 TCGA-BR-4366-01 11 32975670 32975670 A G QSER1 Missense_Mutation p.Q1353R 0.47 deleterious(0.01) possibly_damaging(0.448) TCGA-BR-4366-01 11 34107866 34107866 T C CAPRIN1 Silent p.D379D 0.13 TCGA-BR-4366-01 11 63078575 63078576 - A SLC22A10 3'UTR 0.41 TCGA-BR-4366-01 11 63230811 63230811 G A HRASLS5 3'UTR 0.41 TCGA-BR-4366-01 11 63233831 63233831 C G HRASLS5 Missense_Mutation p.E166D 0.35 tolerated(0.33) possibly_damaging(0.567) TCGA-BR-4366-01 11 93845162 93845162 G C HEPHL1 3'UTR 0.40 TCGA-BR-4366-01 12 10005899 10005899 T G CLEC2B Nonstop_Mutation p.*150Yext*4 0.36 TCGA-BR-4366-01 12 105433501 105433501 T G ALDH1L2 Missense_Mutation p.I679L 0.60 deleterious(0) benign(0.14) TCGA-BR-4366-01 12 124950804 124950804 G A NCOR2 Missense_Mutation p.P207L 0.58 unknown(0) TCGA-BR-4366-01 12 133733085 133733085 C T ZNF10 Missense_Mutation p.S418F 0.34 deleterious(0) probably_damaging(0.999) TCGA-BR-4366-01 12 27869258 27869258 A G MRPS35 Missense_Mutation p.D63G 0.27 deleterious(0) probably_damaging(0.977) TCGA-BR-4366-01 12 29670473 29670473 A G TMTC1 Silent p.L686L 0.47 TCGA-BR-4366-01 12 40653377 40653377 T G LRRK2 Missense_Mutation p.L505R 0.06 deleterious(0) probably_damaging(0.959) TCGA-BR-4366-01 12 52652141 52652141 C T KRT121P RNA 0.43 TCGA-BR-4366-01 12 6833709 6833709 T G COPS7A Intron 0.77 TCGA-BR-4366-01 12 72332730 72332730 C - TPH2 5'UTR 0.29 TCGA-BR-4366-01 12 81627146 81627146 G C ACSS3 Missense_Mutation p.D539H 0.31 deleterious(0.01) probably_damaging(0.986) TCGA-BR-4366-01 12 81627200 81627200 G T ACSS3 Missense_Mutation p.D557Y 0.33 deleterious(0) probably_damaging(0.99) TCGA-BR-4366-01 12 81627237 81627237 G T ACSS3 Missense_Mutation p.G569V 0.34 deleterious(0) probably_damaging(0.999) TCGA-BR-4366-01 12 95660288 95660289 - A VEZT Frame_Shift_Ins p.Y200Ifs*17 0.27 TCGA-BR-4366-01 13 103445952 103445952 T G KDELC1 Missense_Mutation p.K198T 0.36 deleterious(0.04) probably_damaging(0.938) TCGA-BR-4366-01 13 111298372 111298372 A G CARS2 Missense_Mutation p.V420A 0.31 deleterious(0) benign(0.14) TCGA-BR-4366-01 13 25671314 25671314 G A PABPC3 Missense_Mutation p.M326I 0.27 deleterious(0.04) probably_damaging(0.922) TCGA-BR-4366-01 14 21961177 21961177 C G TOX4 Missense_Mutation p.P468A 0.24 deleterious(0) probably_damaging(0.956) TCGA-BR-4366-01 14 31085623 31085623 C G G2E3 Missense_Mutation p.N668K 0.73 tolerated(0.13) probably_damaging(0.938) TCGA-BR-4366-01 15 20588425 20588425 C T HERC2P3 RNA 0.33 TCGA-BR-4366-01 15 28228581 28228581 T G OCA2 Missense_Mutation p.E471D 0.24 deleterious(0.01) probably_damaging(0.995) TCGA-BR-4366-01 15 45003740 45003740 C A B2M 5'UTR 0.39 TCGA-BR-4366-01 15 68504080 68504080 C A CLN6 Missense_Mutation p.S140I 0.34 tolerated(0.3) possibly_damaging(0.804) TCGA-BR-4366-01 15 73052844 73052844 G C ADPGK Missense_Mutation p.P183A 0.39 deleterious(0) possibly_damaging(0.835) TCGA-BR-4366-01 16 1614069 1614069 C T IFT140 Missense_Mutation p.V666M 0.06 tolerated(0.12) benign(0.046) TCGA-BR-4366-01 16 20873428 20873428 A C DCUN1D3 Splice_Site p.X144_splice 0.24 TCGA-BR-4366-01 16 61747758 61747758 G C CDH8 Missense_Mutation p.I547M 0.33 deleterious(0) probably_damaging(0.944) TCGA-BR-4366-01 16 61935315 61935315 A C CDH8 Silent p.A105A 0.27 TCGA-BR-4366-01 17 17127308 17127308 G T FLCN Silent p.L182L 0.20 TCGA-BR-4366-01 17 19687073 19687073 G A ULK2 Silent p.P799P 0.74 TCGA-BR-4366-01 17 38346698 38346698 T C RAPGEFL1 Missense_Mutation p.L170P 0.36 deleterious(0.01) probably_damaging(0.934) TCGA-BR-4366-01 17 39506755 39506755 G A KRT33A Missense_Mutation p.R89W 0.40 deleterious(0.02) benign(0.095) TCGA-BR-4366-01 17 74328423 74328423 G A PRPSAP1 Silent p.F128F 0.36 TCGA-BR-4366-01 17 7578431 7578431 G A TP53 Nonsense_Mutation p.Q167* 0.81 TCGA-BR-4366-01 18 18539829 18539829 A G ROCK1 Missense_Mutation p.S1162P 0.11 deleterious(0.01) probably_damaging(0.978) TCGA-BR-4366-01 18 31319396 31319396 G A ASXL3 Silent p.L676L 0.07 TCGA-BR-4366-01 19 11565551 11565551 G A ELAVL3 Silent p.S298S 0.47 TCGA-BR-4366-01 19 15067316 15067316 G T SLC1A6 Missense_Mutation p.L381I 0.33 deleterious(0.02) benign(0.152) TCGA-BR-4366-01 19 15121880 15121880 C T CCDC105 Silent p.G81G 0.38 TCGA-BR-4366-01 19 15342603 15342603 C T EPHX3 Missense_Mutation p.G105S 0.36 deleterious(0) probably_damaging(0.998) TCGA-BR-4366-01 19 17091331 17091331 G A CPAMD8 Missense_Mutation p.R568C 0.13 tolerated(0.09) benign(0.03) TCGA-BR-4366-01 19 22271975 22271975 A T ZNF257 Missense_Mutation p.T475S 0.09 tolerated(0.2) benign(0.035) TCGA-BR-4366-01 19 22272025 22272025 A G ZNF257 Silent p.E491E 0.10 TCGA-BR-4366-01 19 30935907 30935907 G A ZNF536 Missense_Mutation p.V480I 0.08 tolerated(0.31) benign(0.001) TCGA-BR-4366-01 19 3179985 3179985 C T S1PR4 3'UTR 0.60 TCGA-BR-4366-01 19 41000878 41000878 G A SPTBN4 Missense_Mutation p.R221Q 0.58 deleterious(0) benign(0.019) TCGA-BR-4366-01 19 422149 422149 G A SHC2 Silent p.G539G 0.26 TCGA-BR-4366-01 19 9007487 9007487 T C MUC16 Missense_Mutation p.T13161A 0.71 benign(0.192) TCGA-BR-4366-01 1 111957318 111957318 C T OVGP1 Missense_Mutation p.G602D 0.33 tolerated_low_confidence(1) benign(0.001) TCGA-BR-4366-01 1 146658693 146658693 A G FMO5 Missense_Mutation p.L463S 0.29 deleterious(0.01) probably_damaging(0.918) TCGA-BR-4366-01 1 155716694 155716694 G A GON4L 3'Flank 0.43 TCGA-BR-4366-01 1 156721240 156721240 C T HDGF Intron 0.19 TCGA-BR-4366-01 1 158585084 158585084 C G SPTA1 Missense_Mutation p.G2237A 0.11 deleterious(0.01) probably_damaging(0.942) TCGA-BR-4366-01 1 159505686 159505686 T G OR10J5 Missense_Mutation p.T38P 0.13 deleterious(0) benign(0.049) TCGA-BR-4366-01 1 161967674 161967674 G T OLFML2B Missense_Mutation p.T472K 0.25 tolerated(0.67) benign(0.147) TCGA-BR-4366-01 1 169446719 169446719 A C SLC19A2 Missense_Mutation p.C161G 0.09 deleterious(0) possibly_damaging(0.788) TCGA-BR-4366-01 1 171174749 171174749 C A FMO2 Missense_Mutation p.R387S 0.17 deleterious(0) benign(0.233) TCGA-BR-4366-01 1 171251385 171251385 C T FMO1 Silent p.L366L 0.18 TCGA-BR-4366-01 1 171311028 171311028 G A FMO4 3'UTR 0.35 TCGA-BR-4366-01 1 175048588 175048588 G A TNN Missense_Mutation p.G177S 0.18 tolerated(0.06) benign(0.016) TCGA-BR-4366-01 1 185959498 185959498 A G HMCN1 Silent p.P1100P 0.15 TCGA-BR-4366-01 1 220825398 220825398 C T MARK1 Nonsense_Mutation p.R548* 0.82 TCGA-BR-4366-01 1 248685614 248685614 C G OR2G6 Missense_Mutation p.Q223E 0.17 deleterious(0.01) benign(0.052) TCGA-BR-4366-01 1 40928715 40928715 T A ZFP69B Missense_Mutation p.H353Q 0.26 deleterious(0) probably_damaging(0.998) TCGA-BR-4366-01 1 57258418 57258418 G C C1orf168 Missense_Mutation p.P23R 0.03 deleterious(0.04) possibly_damaging(0.668) TCGA-BR-4366-01 1 67306240 67306240 G A WDR78 Missense_Mutation p.P469L 0.39 deleterious(0.02) benign(0.334) TCGA-BR-4366-01 1 7725165 7725165 C T CAMTA1 Missense_Mutation p.S853L 0.65 deleterious_low_confidence(0.02) probably_damaging(0.99) TCGA-BR-4366-01 1 82372880 82372880 C T LPHN2 Silent p.C84C 0.31 TCGA-BR-4366-01 1 98039509 98039509 T A DPYD Missense_Mutation p.E382D 0.38 tolerated(0.13) benign(0.004) TCGA-BR-4366-01 20 2321089 2321089 C T TGM3 Silent p.T648T 0.03 TCGA-BR-4366-01 20 34501210 34501210 A G PHF20 Missense_Mutation p.K534R 0.13 tolerated(0.25) benign(0.003) TCGA-BR-4366-01 20 43926920 43926920 G A MATN4 Missense_Mutation p.A439V 0.19 benign(0.11) TCGA-BR-4366-01 20 50139845 50139845 G A NFATC2 Missense_Mutation p.T312M 0.40 deleterious(0) benign(0.304) TCGA-BR-4366-01 20 52193274 52193274 T G ZNF217 Silent p.R677R 0.76 TCGA-BR-4366-01 20 55949675 55949675 G A RAE1 Missense_Mutation p.A280T 0.31 tolerated(0.14) possibly_damaging(0.702) TCGA-BR-4366-01 20 60887023 60887023 G A LAMA5 Silent p.F3196F 0.27 TCGA-BR-4366-01 21 34957049 34957049 C G DONSON Missense_Mutation p.R211P 0.45 deleterious(0) probably_damaging(0.998) TCGA-BR-4366-01 22 22937246 22937246 C T IGLV3-32 Missense_Mutation p.P22S 0.20 deleterious(0) benign(0.244) TCGA-BR-4366-01 22 37769783 37769783 G A ELFN2 Missense_Mutation p.R598W 0.35 deleterious(0) possibly_damaging(0.889) TCGA-BR-4366-01 22 38823394 38823394 G A KCNJ4 Silent p.I248I 0.38 TCGA-BR-4366-01 22 43926804 43926804 A T EFCAB6 Missense_Mutation p.L1425Q 0.08 deleterious(0) probably_damaging(0.996) TCGA-BR-4366-01 22 47116796 47116796 C G CERK Intron 0.10 TCGA-BR-4366-01 2 110053479 110053479 G A SH3RF3 Missense_Mutation p.A569T 0.35 tolerated(0.37) benign(0.02) TCGA-BR-4366-01 2 113088706 113088706 C G ZC3H6 Silent p.L737L 0.39 TCGA-BR-4366-01 2 130832597 130832597 G A POTEF Silent p.R816R 0.36 TCGA-BR-4366-01 2 139326687 139326687 T G SPOPL 3'UTR 0.11 TCGA-BR-4366-01 2 141272221 141272221 C T LRP1B Splice_Site p.X2757_splice 0.33 TCGA-BR-4366-01 2 141625336 141625336 A T LRP1B Missense_Mutation p.Y1468N 0.35 benign(0.012) TCGA-BR-4366-01 2 144245037 144245037 A C ARHGAP15 Missense_Mutation p.T267P 0.33 deleterious(0) probably_damaging(0.971) TCGA-BR-4366-01 2 145147197 145147197 C A ZEB2 Missense_Mutation p.G1156C 0.30 deleterious_low_confidence(0.03) benign(0.241) TCGA-BR-4366-01 2 196636411 196636411 C T DNAH7 Silent p.S3802S 0.33 TCGA-BR-4366-01 2 197639881 197639881 G C GTF3C3 Nonsense_Mutation p.S597* 0.46 TCGA-BR-4366-01 2 233243531 233243531 C G ALPP Missense_Mutation p.L7V 0.35 tolerated(0.51) unknown(0) TCGA-BR-4366-01 2 97361584 97361584 C T FER1L5 RNA 0.38 TCGA-BR-4366-01 3 108380769 108380769 G A DZIP3 Missense_Mutation p.E749K 0.32 deleterious(0.01) benign(0.146) TCGA-BR-4366-01 3 124527925 124527925 C A ITGB5 Missense_Mutation p.D403Y 0.39 deleterious(0) probably_damaging(0.998) TCGA-BR-4366-01 3 130381114 130381114 G A COL6A6 Missense_Mutation p.G2155D 0.37 tolerated(0.06) benign(0.241) TCGA-BR-4366-01 3 136342064 136342064 T C STAG1 Missense_Mutation p.H19R 0.39 tolerated_low_confidence(0.62) benign(0.009) TCGA-BR-4366-01 3 1394007 1394007 G C CNTN6 Splice_Site p.X455_splice 0.50 TCGA-BR-4366-01 3 141644421 141644421 A G ATP1B3 Missense_Mutation p.N240D 0.41 tolerated(0.59) benign(0.02) TCGA-BR-4366-01 3 1424781 1424781 T G CNTN6 Missense_Mutation p.F774L 0.45 deleterious(0.02) probably_damaging(0.995) TCGA-BR-4366-01 3 167196561 167196561 T G WDR49 3'UTR 0.20 TCGA-BR-4366-01 3 169840471 169840471 C T PHC3 Missense_Mutation p.R617Q 0.27 tolerated(0.47) benign(0.143) TCGA-BR-4366-01 3 195410622 195410622 G A SDHAP2 Splice_Site 0.14 TCGA-BR-4366-01 3 33427243 33427243 G A FBXL2 3'UTR 0.38 TCGA-BR-4366-01 3 39433101 39433101 C T SLC25A38 Missense_Mutation p.T149M 0.36 deleterious(0.01) probably_damaging(0.93) TCGA-BR-4366-01 3 49027828 49027828 C T P4HTM Missense_Mutation p.R47C 0.50 deleterious_low_confidence(0.01) possibly_damaging(0.862) TCGA-BR-4366-01 3 50396054 50396054 C G TMEM115 Silent p.V147V 0.39 TCGA-BR-4366-01 3 88040851 88040851 G A HTR1F Missense_Mutation p.V318I 0.47 tolerated(1) benign(0.002) TCGA-BR-4366-01 4 119252907 119252907 G A PRSS12 Missense_Mutation p.A312V 0.08 tolerated(0.24) possibly_damaging(0.544) TCGA-BR-4366-01 4 47033662 47033662 G T GABRB1 5'UTR 0.35 TCGA-BR-4366-01 4 74607379 74607379 C T IL8 Missense_Mutation p.A62V 0.28 tolerated(0.11) benign(0.004) TCGA-BR-4366-01 4 79860320 79860320 C T PAQR3 Nonsense_Mutation p.W20* 0.66 TCGA-BR-4366-01 4 80246965 80246965 G A NAA11 Missense_Mutation p.P23S 0.07 deleterious(0.01) probably_damaging(0.992) TCGA-BR-4366-01 4 82065441 82065442 - T PRKG2 Frame_Shift_Ins p.Y400Ifs*3 0.24 TCGA-BR-4366-01 5 131679535 131679535 A G SLC22A4 3'UTR 0.34 TCGA-BR-4366-01 5 140180983 140180983 G A PCDHA3 Silent p.A67A 0.37 TCGA-BR-4366-01 5 140794719 140794719 C T PCDHGA10 Silent p.S659S 0.35 TCGA-BR-4366-01 5 140799123 140799123 C T PCDHGB7 Missense_Mutation p.A566V 0.37 tolerated(0.09) benign(0.23) TCGA-BR-4366-01 5 150422226 150422226 C A TNIP1 Nonsense_Mutation p.E337* 0.38 TCGA-BR-4366-01 5 150723081 150723081 A G SLC36A2 Missense_Mutation p.F112L 0.04 tolerated(1) benign(0.013) TCGA-BR-4366-01 5 158204508 158204508 G T EBF1 Silent p.R317R 0.33 TCGA-BR-4366-01 5 179263587 179263587 G A SQSTM1 Silent p.P439P 0.37 TCGA-BR-4366-01 5 33937955 33937955 G A RXFP3 Silent p.A370A 0.20 TCGA-BR-4366-01 5 44388771 44388771 A C FGF10 Missense_Mutation p.I5R 0.14 deleterious(0) benign(0) TCGA-BR-4366-01 6 110620262 110620262 T C METTL24 Missense_Mutation p.I217V 0.39 tolerated(0.68) benign(0.004) TCGA-BR-4366-01 6 127775078 127775078 C A KIAA0408 Nonsense_Mutation p.E17* 0.16 TCGA-BR-4366-01 6 143792193 143792193 G T PEX3 Missense_Mutation p.D143Y 0.35 deleterious(0) probably_damaging(0.969) TCGA-BR-4366-01 6 149394999 149394999 C T UST Missense_Mutation p.T323M 0.14 deleterious(0) probably_damaging(0.986) TCGA-BR-4366-01 6 149944303 149944303 T C KATNA1 Missense_Mutation p.N146S 0.29 tolerated(0.78) benign(0.002) TCGA-BR-4366-01 6 157527345 157527345 C A ARID1B Nonsense_Mutation p.C1690* 0.34 TCGA-BR-4366-01 6 56469646 56469646 A T DST Intron 0.43 TCGA-BR-4366-01 6 72955550 72955550 C T RIMS1 Missense_Mutation p.P705L 0.07 tolerated(0.06) possibly_damaging(0.525) TCGA-BR-4366-01 7 127014104 127014104 T G ZNF800 Missense_Mutation p.N429T 0.05 tolerated(0.51) benign(0.186) TCGA-BR-4366-01 7 136700630 136700630 A G CHRM2 Missense_Mutation p.T340A 0.19 tolerated(0.59) benign(0.003) TCGA-BR-4366-01 7 147869380 147869380 G C CNTNAP2 Missense_Mutation p.L940F 0.19 deleterious(0.02) probably_damaging(0.99) TCGA-BR-4366-01 7 150779627 150779627 A G TMUB1 Silent p.G8G 0.31 TCGA-BR-4366-01 7 27183267 27183267 G C HOXA5 5'UTR 0.08 TCGA-BR-4366-01 7 27832693 27832693 T C TAX1BP1 Silent p.T424T 0.15 TCGA-BR-4366-01 7 50468108 50468108 C T IKZF1 Missense_Mutation p.A406V 0.34 tolerated(0.28) benign(0.047) TCGA-BR-4366-01 7 92935138 92935138 A G CCDC132 Splice_Site p.X485_splice 0.37 TCGA-BR-4366-01 7 94059632 94059632 A C COL1A2 Missense_Mutation p.D1343A 0.45 unknown(0) TCGA-BR-4366-01 7 94059634 94059634 A T COL1A2 Missense_Mutation p.I1344F 0.44 unknown(0) TCGA-BR-4366-01 8 104427572 104427572 T G DCAF13 Silent p.T118T 0.12 TCGA-BR-4366-01 8 11831582 11831582 G C DEFB136 Missense_Mutation p.T34S 0.17 deleterious(0.04) benign(0.295) TCGA-BR-4366-01 8 134146930 134146930 G A TG Silent p.K2733K 0.63 TCGA-BR-4366-01 8 139164785 139164785 T G FAM135B Missense_Mutation p.S645R 0.27 tolerated(0.13) benign(0.303) TCGA-BR-4366-01 8 145741255 145741255 C T RECQL4 Missense_Mutation p.R384Q 0.21 tolerated(1) benign(0.002) TCGA-BR-4366-01 8 20067922 20067922 C T ATP6V1B2 Silent p.L119L 0.48 TCGA-BR-4366-01 8 27528492 27528492 C T SCARA3 Missense_Mutation p.P482L 0.31 tolerated(0.3) probably_damaging(0.913) TCGA-BR-4366-01 8 33371050 33371050 G A TTI2 5'UTR 0.33 TCGA-BR-4366-01 8 36641910 36641910 G A KCNU1 5'UTR 0.38 TCGA-BR-4366-01 8 68084687 68084687 G C CSPP1 Missense_Mutation p.M950I 0.14 deleterious(0.01) benign(0.208) TCGA-BR-4366-01 8 74516095 74516095 C T STAU2 Missense_Mutation p.G299R 0.28 tolerated(0.08) possibly_damaging(0.748) TCGA-BR-4366-01 8 88365898 88365898 T C CNBD1 Missense_Mutation p.L396P 0.30 deleterious(0) probably_damaging(0.999) TCGA-BR-4366-01 9 21971119 21971119 C T CDKN2A Missense_Mutation p.R80Q 0.50 tolerated(0.12) possibly_damaging(0.665) TCGA-BR-4366-01 9 3224939 3224939 G A RFX3 3'UTR 0.29 TCGA-BR-4366-01 9 33466322 33466322 G A NOL6 Silent p.Y731Y 0.41 TCGA-BR-4366-01 9 4741007 4741007 G A AK3 Silent p.I27I 0.37 TCGA-BR-4366-01 9 6610217 6610217 C A GLDC Missense_Mutation p.A204S 0.41 deleterious(0.02) probably_damaging(0.999) TCGA-BR-4366-01 9 91993768 91993768 C T SEMA4D Missense_Mutation p.G814S 0.32 deleterious(0) probably_damaging(0.998) TCGA-BR-4366-01 X 12736052 12736052 G C FRMPD4 Missense_Mutation p.G1036A 0.74 tolerated_low_confidence(0.33) benign(0.033) TCGA-BR-4366-01 X 14883234 14883234 G A FANCB Silent p.G133G 0.82 TCGA-BR-4366-01 X 1585028 1585028 C A P2RY8 Missense_Mutation p.A142S 0.33 deleterious(0.05) benign(0.438) TCGA-BR-4366-01 X 17745707 17745707 G A NHS Missense_Mutation p.D1140N 0.34 tolerated(0.15) benign(0.004) TCGA-BR-4366-01 X 43603732 43603732 A T MAOA Missense_Mutation p.Y519F 0.07 tolerated(0.13) benign(0.002) TCGA-BR-4366-01 X 90690690 90690690 C A PABPC5 Missense_Mutation p.F38L 0.78 deleterious(0.03) probably_damaging(0.999) TCGA-BR-4366-01 X 90690691 90690691 A G PABPC5 Missense_Mutation p.R39G 0.78 deleterious(0) benign(0.324) TCGA-BR-4368-01 10 101294790 101294790 C T NKX2-3 Missense_Mutation p.A136V 0.43 tolerated(0.29) benign(0.002) TCGA-BR-4368-01 10 101486818 101486818 G A COX15 Silent p.Y163Y 0.06 TCGA-BR-4368-01 10 101514332 101514332 A G CUTC Silent p.S216S 0.34 TCGA-BR-4368-01 10 101590172 101590172 G A ABCC2 Missense_Mutation p.R910H 0.09 tolerated(0.28) benign(0.003) TCGA-BR-4368-01 10 101590491 101590491 G A ABCC2 Silent p.R922R 0.06 TCGA-BR-4368-01 10 101835823 101835823 C T CPN1 Missense_Mutation p.E89K 0.30 deleterious(0) probably_damaging(1) TCGA-BR-4368-01 10 103799868 103799868 C T C10orf76 Missense_Mutation p.A2T 0.28 deleterious_low_confidence(0.02) benign(0.061) TCGA-BR-4368-01 10 104632870 104632870 A C AS3MT Missense_Mutation p.K113T 0.26 tolerated(0.11) benign(0.158) TCGA-BR-4368-01 10 105037797 105037797 G A INA Missense_Mutation p.A277T 0.08 tolerated(0.63) probably_damaging(0.915) TCGA-BR-4368-01 10 105361647 105361647 A G SH3PXD2A Missense_Mutation p.Y1082H 0.18 deleterious(0) probably_damaging(0.999) TCGA-BR-4368-01 10 108923733 108923733 G A SORCS1 Silent p.N184N 0.22 TCGA-BR-4368-01 10 112258036 112258036 C T DUSP5 Missense_Mutation p.R53W 0.10 deleterious(0.03) possibly_damaging(0.825) TCGA-BR-4368-01 10 11317065 11317065 G A CELF2 Missense_Mutation p.G275S 0.15 tolerated(0.47) benign(0.021) TCGA-BR-4368-01 10 11505504 11505504 C T USP6NL Missense_Mutation p.A492T 0.16 deleterious(0) probably_damaging(1) TCGA-BR-4368-01 10 115312831 115312831 A G HABP2 5'UTR 0.11 TCGA-BR-4368-01 10 115343921 115343921 A C HABP2 Missense_Mutation p.K418Q 0.31 tolerated(0.07) possibly_damaging(0.777) TCGA-BR-4368-01 10 115383322 115383322 A G NRAP Missense_Mutation p.L808P 0.24 tolerated(0.06) possibly_damaging(0.857) TCGA-BR-4368-01 10 116037686 116037686 C T VWA2 Missense_Mutation p.H194Y 0.31 tolerated(0.15) benign(0.049) TCGA-BR-4368-01 10 11789445 11789445 G A ECHDC3 Missense_Mutation p.D90N 0.35 tolerated(0.24) benign(0.014) TCGA-BR-4368-01 10 11894126 11894126 C T PROSER2 Missense_Mutation p.T17M 0.20 tolerated(1) benign(0.004) TCGA-BR-4368-01 10 120514110 120514110 C - CACUL1 Frame_Shift_Del p.Q56Sfs*32 0.53 TCGA-BR-4368-01 10 121658058 121658058 A G SEC23IP Missense_Mutation p.N95D 0.04 tolerated(0.06) benign(0.062) TCGA-BR-4368-01 10 124186520 124186520 G A PLEKHA1 Silent p.Q291Q 0.26 TCGA-BR-4368-01 10 124189240 124189240 T C PLEKHA1 Missense_Mutation p.V334A 0.19 deleterious(0.04) benign(0.015) TCGA-BR-4368-01 10 124249045 124249045 G A HTRA1 Missense_Mutation p.R227Q 0.16 tolerated(0.46) possibly_damaging(0.535) TCGA-BR-4368-01 10 124596473 124596473 G A CUZD1 Missense_Mutation p.R231C 0.13 tolerated(0.14) possibly_damaging(0.863) TCGA-BR-4368-01 10 127726832 127726832 G A ADAM12 Missense_Mutation p.P779L 0.24 deleterious(0.04) benign(0.082) TCGA-BR-4368-01 10 134041580 134041580 A G STK32C Missense_Mutation p.M124T 0.29 deleterious(0) possibly_damaging(0.644) TCGA-BR-4368-01 10 15183500 15183500 T - NMT2 Frame_Shift_Del p.K56Rfs*75 0.16 TCGA-BR-4368-01 10 16979614 16979614 C T CUBN Missense_Mutation p.G1968D 0.29 tolerated(0.05) benign(0.058) TCGA-BR-4368-01 10 17636319 17636319 A G PTPLA Silent p.A223A 0.17 TCGA-BR-4368-01 10 17865318 17865318 A - MRC1L1 Frame_Shift_Del p.N104Mfs*57 0.18 TCGA-BR-4368-01 10 21147169 21147169 G A NEBL Silent p.G301G 0.35 TCGA-BR-4368-01 10 22618490 22618490 A - BMI1 3'UTR 0.21 TCGA-BR-4368-01 10 26359255 26359255 T C MYO3A Silent p.V428V 0.17 TCGA-BR-4368-01 10 27322259 27322259 T - ANKRD26 Frame_Shift_Del p.K1234Nfs*19 0.18 TCGA-BR-4368-01 10 29821497 29821497 G A SVIL Missense_Mutation p.A600V 0.16 tolerated(0.45) benign(0.002) TCGA-BR-4368-01 10 31134090 31134090 G T ZNF438 Missense_Mutation p.P763T 0.34 tolerated(0.08) possibly_damaging(0.559) TCGA-BR-4368-01 10 31139183 31139183 G A ZNF438 Silent p.L51L 0.14 TCGA-BR-4368-01 10 34601219 34601219 A - PARD3 Intron 0.35 TCGA-BR-4368-01 10 43696165 43696165 C T RASGEF1A Missense_Mutation p.V211M 0.20 deleterious(0.05) benign(0.15) TCGA-BR-4368-01 10 43882014 43882014 T C HNRNPF 3'UTR 0.05 TCGA-BR-4368-01 10 45487447 45487447 T C RASSF4 Missense_Mutation p.M301T 0.33 tolerated(0.79) benign(0.002) TCGA-BR-4368-01 10 46121425 46121425 G - ZFAND4 Frame_Shift_Del p.Q616Sfs*2 0.28 TCGA-BR-4368-01 10 50820184 50820184 G A SLC18A3 Silent p.L466L 0.21 TCGA-BR-4368-01 10 50863204 50863204 C T CHAT Silent p.R566R 0.17 TCGA-BR-4368-01 10 54042012 54042012 G T PRKG1 Missense_Mutation p.G549C 0.14 deleterious(0) probably_damaging(1) TCGA-BR-4368-01 10 55582333 55582333 G A PCDH15 Missense_Mutation p.P1720L 0.12 deleterious_low_confidence(0) benign(0.103) TCGA-BR-4368-01 10 5782141 5782142 GA - FAM208B Frame_Shift_Del p.E672Dfs*15 0.25 TCGA-BR-4368-01 10 6054786 6054786 G A IL2RA 3'UTR 0.10 TCGA-BR-4368-01 10 60549123 60549123 G A BICC1 Silent p.T234T 0.14 TCGA-BR-4368-01 10 61847936 61847936 G A ANK3 Missense_Mutation p.A1170V 0.03 probably_damaging(0.998) TCGA-BR-4368-01 10 64974663 64974663 C T JMJD1C Missense_Mutation p.A422T 0.28 tolerated_low_confidence(0.18) benign(0.001) TCGA-BR-4368-01 10 70051980 70051980 G A PBLD Missense_Mutation p.T100M 0.36 deleterious(0.04) benign(0.054) TCGA-BR-4368-01 10 70098402 70098402 A G HNRNPH3 Missense_Mutation p.M132V 0.20 tolerated(0.38) benign(0.019) TCGA-BR-4368-01 10 70696705 70696705 G A DDX50 Missense_Mutation p.V537I 0.33 tolerated(0.08) possibly_damaging(0.682) TCGA-BR-4368-01 10 71851665 71851665 G - H2AFY2 Frame_Shift_Del p.K147Rfs*53 0.27 TCGA-BR-4368-01 10 72496472 72496472 A G ADAMTS14 Missense_Mutation p.S511G 0.17 deleterious(0) probably_damaging(0.998) TCGA-BR-4368-01 10 72543270 72543270 C T TBATA 5'UTR 0.33 TCGA-BR-4368-01 10 74692392 74692392 G T OIT3 3'UTR 0.33 TCGA-BR-4368-01 10 75557154 75557154 C T ZSWIM8 Silent p.S1151S 0.46 TCGA-BR-4368-01 10 76153932 76153932 T - ADK Frame_Shift_Del p.F104Lfs*6 0.21 TCGA-BR-4368-01 10 78771771 78771771 A G KCNMA1 Silent p.D682D 0.08 TCGA-BR-4368-01 10 79581412 79581412 C T DLG5 Missense_Mutation p.G944S 0.29 tolerated(0.1) probably_damaging(0.974) TCGA-BR-4368-01 10 88441340 88441340 G A LDB3 Missense_Mutation p.E157K 0.19 tolerated(0.34) benign(0.007) TCGA-BR-4368-01 10 88822563 88822563 A G GLUD1 Silent p.G257G 0.35 TCGA-BR-4368-01 10 890939 890939 T - LARP4B Frame_Shift_Del p.T163Hfs*47 0.22 TCGA-BR-4368-01 10 90967020 90967020 C A CH25H Missense_Mutation p.Q10H 0.33 tolerated(0.79) benign(0.001) TCGA-BR-4368-01 10 96014707 96014707 T A PLCE1 Nonsense_Mutation p.L1152* 0.19 TCGA-BR-4368-01 10 97446824 97446824 A G TCTN3 Missense_Mutation p.Y277H 0.18 deleterious(0) probably_damaging(0.992) TCGA-BR-4368-01 10 99126211 99126211 C T RRP12 Missense_Mutation p.R1128Q 0.22 deleterious(0.01) benign(0.139) TCGA-BR-4368-01 10 99677257 99677257 C A CRTAC1 Missense_Mutation p.G239W 0.39 deleterious(0) probably_damaging(0.999) TCGA-BR-4368-01 11 100126491 100126491 G T CNTN5 Splice_Site p.X669_splice 0.28 TCGA-BR-4368-01 11 101833873 101833873 G T KIAA1377 Nonsense_Mutation p.G703* 0.05 TCGA-BR-4368-01 11 102585436 102585436 G A MMP8 Silent p.N347N 0.28 TCGA-BR-4368-01 11 105881195 105881195 C T MSANTD4 Silent p.P150P 0.22 TCGA-BR-4368-01 11 107799397 107799397 G A RAB39A Missense_Mutation p.G35R 0.48 tolerated(0.13) benign(0.011) TCGA-BR-4368-01 11 111430909 111430909 A G LAYN Missense_Mutation p.Y292C 0.45 deleterious(0) probably_damaging(0.996) TCGA-BR-4368-01 11 11292625 11292625 C T GALNT18 3'UTR 0.28 TCGA-BR-4368-01 11 11373969 11373969 A - CSNK2A3 Frame_Shift_Del p.F233Sfs*11 0.14 TCGA-BR-4368-01 11 117186302 117186302 C T BACE1 Silent p.K70K 0.19 TCGA-BR-4368-01 11 119044614 119044614 G A NLRX1 Missense_Mutation p.R219H 0.17 deleterious(0.03) probably_damaging(0.984) TCGA-BR-4368-01 11 119169107 119169107 C A CBL Missense_Mutation p.P764H 0.33 deleterious_low_confidence(0) possibly_damaging(0.503) TCGA-BR-4368-01 11 123624522 123624522 A C OR6X1 Silent p.T235T 0.14 TCGA-BR-4368-01 11 124617422 124617422 C T VSIG2 3'UTR 0.13 TCGA-BR-4368-01 11 125330401 125330401 G T FEZ1 Silent p.S220S 0.32 TCGA-BR-4368-01 11 125880287 125880287 C T CDON Missense_Mutation p.E501K 0.18 tolerated(0.25) probably_damaging(0.934) TCGA-BR-4368-01 11 1262817 1262817 C T MUC5B Silent p.D1569D 0.11 TCGA-BR-4368-01 11 1268464 1268464 G A MUC5B Missense_Mutation p.A3452T 0.18 unknown(0) TCGA-BR-4368-01 11 128851757 128851757 T - ARHGAP32 Frame_Shift_Del p.N520Ifs*2 0.34 TCGA-BR-4368-01 11 129785641 129785641 T C PRDM10 Missense_Mutation p.M818V 0.14 deleterious(0.04) probably_damaging(0.915) TCGA-BR-4368-01 11 132812832 132812832 G T OPCML Missense_Mutation p.S52R 0.21 tolerated(0.06) probably_damaging(0.922) TCGA-BR-4368-01 11 133800877 133800877 A G IGSF9B Splice_Site p.X507_splice 0.33 TCGA-BR-4368-01 11 134022868 134022868 G A NCAPD3 Nonsense_Mutation p.R1490* 0.04 TCGA-BR-4368-01 11 1491525 1491525 G A MOB2 Silent p.T228T 0.16 TCGA-BR-4368-01 11 1501680 1501680 C A MOB2 Missense_Mutation p.S103I 0.33 deleterious(0.02) probably_damaging(1) TCGA-BR-4368-01 11 16424307 16424308 - A SOX6 Intron 0.22 TCGA-BR-4368-01 11 17111327 17111327 C T PIK3C2A Silent p.E1673E 0.35 TCGA-BR-4368-01 11 17419240 17419240 G A ABCC8 Silent p.Y1286Y 0.29 TCGA-BR-4368-01 11 17741370 17741370 C T MYOD1 Missense_Mutation p.T14M 0.13 tolerated_low_confidence(0.07) benign(0.409) TCGA-BR-4368-01 11 17793391 17793391 C T KCNC1 Silent p.G250G 0.21 TCGA-BR-4368-01 11 18158919 18158919 G A MRGPRX3 Missense_Mutation p.R57H 0.17 tolerated(0.41) benign(0.021) TCGA-BR-4368-01 11 19076991 19076991 C T MRGPRX2 Missense_Mutation p.G320D 0.33 tolerated(0.37) benign(0.009) TCGA-BR-4368-01 11 2411682 2411682 G A CD81 Missense_Mutation p.R36H 0.13 deleterious(0.03) probably_damaging(0.996) TCGA-BR-4368-01 11 2417118 2417118 G T CD81 Missense_Mutation p.S160I 0.29 tolerated(0.14) benign(0.039) TCGA-BR-4368-01 11 2436251 2436251 C T TRPM5 Silent p.T502T 0.36 TCGA-BR-4368-01 11 24759794 24759794 C A LUZP2 Silent p.A93A 0.15 TCGA-BR-4368-01 11 30033563 30033563 A - KCNA4 Frame_Shift_Del p.F221Lfs*21 0.22 TCGA-BR-4368-01 11 33790478 33790478 A G FBXO3 Missense_Mutation p.Y93H 0.32 deleterious(0) possibly_damaging(0.732) TCGA-BR-4368-01 11 35250752 35250752 G A CD44 Missense_Mutation p.G701R 0.17 deleterious(0) probably_damaging(0.998) TCGA-BR-4368-01 11 375700 375700 G - B4GALNT4 Frame_Shift_Del p.R307Vfs*100 0.26 TCGA-BR-4368-01 11 4104524 4104524 C T STIM1 Missense_Mutation p.R424W 0.28 deleterious(0) probably_damaging(0.998) TCGA-BR-4368-01 11 432030 432030 G A ANO9 Silent p.F125F 0.36 TCGA-BR-4368-01 11 45672030 45672030 G A CHST1 Silent p.T148T 0.30 TCGA-BR-4368-01 11 45935969 45935969 G A PEX16 Missense_Mutation p.R198W 0.43 tolerated(0.08) benign(0.001) TCGA-BR-4368-01 11 46564318 46564318 A C AMBRA1 Missense_Mutation p.S327A 0.04 tolerated_low_confidence(0.48) benign(0.011) TCGA-BR-4368-01 11 46894894 46894894 C A LRP4 Intron 0.20 TCGA-BR-4368-01 11 47196853 47196853 A - ARFGAP2 Frame_Shift_Del p.R93Afs*43 0.34 TCGA-BR-4368-01 11 47464296 47464296 C A RAPSN Missense_Mutation p.S201I 0.05 deleterious(0) probably_damaging(0.979) TCGA-BR-4368-01 11 47602246 47602246 A G NDUFS3 Intron 0.16 TCGA-BR-4368-01 11 47828658 47828658 A T NUP160 Missense_Mutation p.L804I 0.37 tolerated(0.26) benign(0.241) TCGA-BR-4368-01 11 48285771 48285771 G A OR4X1 Missense_Mutation p.R120H 0.13 deleterious(0.03) benign(0.081) TCGA-BR-4368-01 11 489433 489433 G A PTDSS2 Silent p.T296T 0.37 TCGA-BR-4368-01 11 49974702 49974702 C A OR4C13 Missense_Mutation p.T243K 0.13 deleterious_low_confidence(0) probably_damaging(0.939) TCGA-BR-4368-01 11 5323054 5323054 G A OR51B4 Silent p.G41G 0.21 TCGA-BR-4368-01 11 55065505 55065505 T C TRIM51HP RNA 0.35 TCGA-BR-4368-01 11 55653610 55653610 A - TRIM51 Frame_Shift_Del p.M144Cfs*15 0.38 TCGA-BR-4368-01 11 563540 563540 G A RASSF7 Intron 0.15 TCGA-BR-4368-01 11 56409492 56409492 C T OR5AP2 Missense_Mutation p.V142M 0.14 tolerated(1) benign(0.003) TCGA-BR-4368-01 11 56949289 56949289 G A LRRC55 5'UTR 0.19 TCGA-BR-4368-01 11 57093923 57093923 A G SSRP1 Silent p.T696T 0.15 TCGA-BR-4368-01 11 57147021 57147021 G A PRG3 Silent p.C107C 0.31 TCGA-BR-4368-01 11 57235469 57235469 G A RTN4RL2 Missense_Mutation p.R140H 0.11 tolerated(0.08) probably_damaging(0.977) TCGA-BR-4368-01 11 57373915 57373915 C A SERPING1 Silent p.T308T 0.15 TCGA-BR-4368-01 11 57582936 57582936 C T CTNND1 Silent p.G924G 0.41 TCGA-BR-4368-01 11 57982425 57982425 C - OR1S1 Frame_Shift_Del p.M72Cfs*25 0.15 TCGA-BR-4368-01 11 5905736 5905736 G T OR52E4 Missense_Mutation p.D72Y 0.20 deleterious(0) benign(0.063) TCGA-BR-4368-01 11 5906312 5906312 C T OR52E4 Missense_Mutation p.R264C 0.19 deleterious(0.03) probably_damaging(0.913) TCGA-BR-4368-01 11 6024037 6024037 C T OR56A4 Silent p.L114L 0.36 TCGA-BR-4368-01 11 60615436 60615436 G A CCDC86 Silent p.S266S 0.34 TCGA-BR-4368-01 11 60640952 60640952 A G ZP1 Missense_Mutation p.N449D 0.29 tolerated(0.55) benign(0.229) TCGA-BR-4368-01 11 60704755 60704755 C A SLC15A3 Missense_Mutation p.G561V 0.32 tolerated(0.59) benign(0.017) TCGA-BR-4368-01 11 60714281 60714281 C T SLC15A3 Missense_Mutation p.G191S 0.33 deleterious(0.04) probably_damaging(1) TCGA-BR-4368-01 11 61094348 61094348 G A DDB1 Silent p.H189H 0.17 TCGA-BR-4368-01 11 61136177 61136177 G T TMEM138 Missense_Mutation p.R162M 0.20 deleterious_low_confidence(0.01) probably_damaging(0.946) TCGA-BR-4368-01 11 61578343 61578343 G - FADS1 Frame_Shift_Del p.A266Pfs*60 0.28 TCGA-BR-4368-01 11 62343367 62343367 C T TUT1 Silent p.P646P 0.06 TCGA-BR-4368-01 11 62346056 62346056 G A TUT1 Silent p.H417H 0.34 TCGA-BR-4368-01 11 63960668 63960668 A G STIP1 Missense_Mutation p.N43S 0.06 deleterious(0) probably_damaging(1) TCGA-BR-4368-01 11 64418979 64418979 C T NRXN2 Missense_Mutation p.G889D 0.30 deleterious(0) probably_damaging(0.998) TCGA-BR-4368-01 11 64669492 64669492 C T ATG2A Missense_Mutation p.G1354E 0.22 tolerated(0.3) benign(0.009) TCGA-BR-4368-01 11 65266552 65266552 G - MALAT1 RNA 0.25 TCGA-BR-4368-01 11 65617442 65617444 GAG - SNX32 In_Frame_Del p.E66del 0.30 TCGA-BR-4368-01 11 66102359 66102359 C T RIN1 Missense_Mutation p.S304N 0.62 tolerated(0.09) benign(0.159) TCGA-BR-4368-01 11 66131829 66131829 T C SLC29A2 Missense_Mutation p.M376V 0.17 deleterious(0.02) probably_damaging(0.933) TCGA-BR-4368-01 11 66235678 66235678 G A PELI3 Missense_Mutation p.V27I 0.14 tolerated_low_confidence(1) benign(0) TCGA-BR-4368-01 11 66290971 66290971 C A BBS1 Missense_Mutation p.P292H 0.32 deleterious(0) possibly_damaging(0.757) TCGA-BR-4368-01 11 66297418 66297418 G A BBS1 Missense_Mutation p.A490T 0.29 deleterious(0.04) possibly_damaging(0.668) TCGA-BR-4368-01 11 66392333 66392333 A G RBM14 Missense_Mutation p.N329S 0.07 tolerated(1) benign(0.002) TCGA-BR-4368-01 11 66436179 66436179 G A RBM4B Silent p.S332S 0.27 TCGA-BR-4368-01 11 66605896 66605896 G A C11orf80 Missense_Mutation p.S576N 0.31 tolerated(0.1) possibly_damaging(0.682) TCGA-BR-4368-01 11 66807288 66807288 C T SYT12 Missense_Mutation p.P79S 0.04 tolerated_low_confidence(0.49) benign(0.001) TCGA-BR-4368-01 11 67200454 67200454 C T RPS6KB2 Silent p.C216C 0.14 TCGA-BR-4368-01 11 67208620 67208620 C T CORO1B Silent p.E244E 0.33 TCGA-BR-4368-01 11 68192599 68192599 G A LRP5 Missense_Mutation p.R1089Q 0.09 tolerated(0.14) benign(0.158) TCGA-BR-4368-01 11 6913404 6913404 T C OR2D2 Missense_Mutation p.T110A 0.30 tolerated(0.07) benign(0.077) TCGA-BR-4368-01 11 70332838 70332838 G A SHANK2 Missense_Mutation p.A1188V 0.10 tolerated(0.07) benign(0.002) TCGA-BR-4368-01 11 71850033 71850033 C T FOLR3 Missense_Mutation p.A108V 0.40 tolerated(0.39) possibly_damaging(0.483) TCGA-BR-4368-01 11 71948521 71948521 G A INPPL1 Missense_Mutation p.R1078Q 0.29 tolerated(0.6) benign(0.238) TCGA-BR-4368-01 11 724757 724757 C T EPS8L2 Silent p.Y496Y 0.12 TCGA-BR-4368-01 11 7324616 7324616 G A SYT9 Silent p.S164S 0.14 TCGA-BR-4368-01 11 7507086 7507086 C T OLFML1 5'UTR 0.33 TCGA-BR-4368-01 11 77885584 77885584 G A KCTD21 Missense_Mutation p.T6M 0.26 deleterious(0) probably_damaging(0.985) TCGA-BR-4368-01 11 792014 792014 G A SLC25A22 Silent p.R291R 0.45 TCGA-BR-4368-01 11 82936061 82936061 G A ANKRD42 Missense_Mutation p.A223T 0.12 tolerated(0.27) benign(0.007) TCGA-BR-4368-01 11 84028016 84028016 C - DLG2 Intron 0.20 TCGA-BR-4368-01 11 85436878 85436878 T - SYTL2 Frame_Shift_Del p.T208Qfs*25 0.20 TCGA-BR-4368-01 11 9048996 9048996 G - SCUBE2 Frame_Shift_Del p.K816Sfs*5 0.19 TCGA-BR-4368-01 11 92088255 92088255 C T FAT3 Missense_Mutation p.R993C 0.46 probably_damaging(1) TCGA-BR-4368-01 11 92600334 92600334 C T FAT3 Missense_Mutation p.P4029L 0.35 possibly_damaging(0.825) TCGA-BR-4368-01 11 95712232 95712232 G A MAML2 Silent p.N1117N 0.32 TCGA-BR-4368-01 11 95825802 95825802 G A MAML2 Missense_Mutation p.P465S 0.08 possibly_damaging(0.696) TCGA-BR-4368-01 12 100431405 100431405 C T UHRF1BP1L 3'UTR 0.07 TCGA-BR-4368-01 12 108913233 108913233 C T FICD Missense_Mutation p.T453M 0.49 deleterious_low_confidence(0) probably_damaging(0.947) TCGA-BR-4368-01 12 109041214 109041214 T C CORO1C Missense_Mutation p.K464E 0.34 tolerated(0.87) benign(0.001) TCGA-BR-4368-01 12 109526014 109526014 T - ALKBH2 Frame_Shift_Del p.K261Nfs*? 0.31 TCGA-BR-4368-01 12 111729244 111729244 G A CUX2 Silent p.A108A 0.36 TCGA-BR-4368-01 12 111758485 111758485 A G CUX2 Missense_Mutation p.Y891C 0.14 deleterious(0) probably_damaging(1) TCGA-BR-4368-01 12 112924286 112924286 C T PTPN11 Missense_Mutation p.T411M 0.12 tolerated(0.19) benign(0.089) TCGA-BR-4368-01 12 113837436 113837436 G A SDS Silent p.S26S 0.35 TCGA-BR-4368-01 12 11545756 11545756 G C PRB2 3'UTR 0.19 TCGA-BR-4368-01 12 117655869 117655869 C T NOS1 Missense_Mutation p.S1458N 0.09 tolerated(0.08) benign(0.033) TCGA-BR-4368-01 12 117705943 117705943 C T NOS1 Missense_Mutation p.A616T 0.16 deleterious(0.01) possibly_damaging(0.474) TCGA-BR-4368-01 12 120106124 120106124 G - PRKAB1 Frame_Shift_Del p.G27Afs*11 0.32 TCGA-BR-4368-01 12 120210640 120210640 C T CIT Silent p.E672E 0.17 TCGA-BR-4368-01 12 120990439 120990439 C T RNF10 Silent p.S164S 0.28 TCGA-BR-4368-01 12 121698197 121698197 C T CAMKK2 Intron 0.21 TCGA-BR-4368-01 12 121765029 121765029 A G ANAPC5 Missense_Mutation p.M437T 0.06 deleterious(0) probably_damaging(0.995) TCGA-BR-4368-01 12 121880054 121880054 C T KDM2B Missense_Mutation p.V1064I 0.23 tolerated(0.44) probably_damaging(0.997) TCGA-BR-4368-01 12 122751031 122751031 C T VPS33A 5'UTR 0.23 TCGA-BR-4368-01 12 123290732 123290732 G T CCDC62 Missense_Mutation p.G581C 0.35 deleterious(0.02) possibly_damaging(0.896) TCGA-BR-4368-01 12 124305198 124305198 G A DNAH10 Missense_Mutation p.A1240T 0.06 possibly_damaging(0.588) TCGA-BR-4368-01 12 125497154 125497154 C T BRI3BP Silent p.T96T 0.29 TCGA-BR-4368-01 12 131593289 131593289 C T GPR133 Silent p.A636A 0.21 TCGA-BR-4368-01 12 132329951 132329951 C T MMP17 Silent p.A387A 0.33 TCGA-BR-4368-01 12 132402066 132402066 C - ULK1 Frame_Shift_Del p.Q767Rfs*57 0.22 TCGA-BR-4368-01 12 132547164 132547164 C T EP400 Missense_Mutation p.T2751M 0.24 possibly_damaging(0.897) TCGA-BR-4368-01 12 133381582 133381582 C A GOLGA3 Missense_Mutation p.Q439H 0.31 deleterious(0) probably_damaging(0.924) TCGA-BR-4368-01 12 133385003 133385003 G A GOLGA3 Missense_Mutation p.P218S 0.17 deleterious_low_confidence(0.03) probably_damaging(0.999) TCGA-BR-4368-01 12 16510630 16510630 G A MGST1 Missense_Mutation p.R73H 0.31 deleterious(0.02) benign(0.298) TCGA-BR-4368-01 12 22005061 22005061 A G ABCC9 Silent p.L913L 0.11 TCGA-BR-4368-01 12 25398281 25398281 C T KRAS Missense_Mutation p.G13D 0.38 deleterious(0.04) possibly_damaging(0.506) TCGA-BR-4368-01 12 2795379 2795379 C T CACNA1C Nonsense_Mutation p.R1958* 0.20 TCGA-BR-4368-01 12 29486743 29486743 G A FAR2 3'UTR 0.15 TCGA-BR-4368-01 12 2968088 2968088 G - FOXM1 Frame_Shift_Del p.E709Nfs*12 0.32 TCGA-BR-4368-01 12 313794 313794 C T SLC6A12 Silent p.A95A 0.10 TCGA-BR-4368-01 12 31440620 31440620 C T FAM60A Missense_Mutation p.G152S 0.13 tolerated(0.35) benign(0.002) TCGA-BR-4368-01 12 31820594 31820594 T A METTL20 Silent p.A153A 0.44 TCGA-BR-4368-01 12 38714473 38714473 T - ALG10B Frame_Shift_Del p.S296Hfs*23 0.15 TCGA-BR-4368-01 12 40697791 40697791 T C LRRK2 Missense_Mutation p.L1211P 0.17 deleterious(0) probably_damaging(0.999) TCGA-BR-4368-01 12 42860065 42860065 G A PRICKLE1 Missense_Mutation p.R236C 0.11 deleterious(0) probably_damaging(0.967) TCGA-BR-4368-01 12 44148382 44148382 C T PUS7L Missense_Mutation p.D223N 0.09 tolerated(0.09) benign(0.216) TCGA-BR-4368-01 12 46760899 46760899 C A SLC38A2 Missense_Mutation p.K147N 0.05 deleterious(0.01) probably_damaging(0.996) TCGA-BR-4368-01 12 48577834 48577834 C T C12orf68 5'UTR 0.46 TCGA-BR-4368-01 12 48962351 48962351 T C LALBA Missense_Mutation p.D106G 0.18 deleterious(0.02) probably_damaging(1) TCGA-BR-4368-01 12 4920971 4920971 T G KCNA6 3'UTR 0.22 TCGA-BR-4368-01 12 49443667 49443667 C - KMT2D Frame_Shift_Del p.G1235Vfs*95 0.37 TCGA-BR-4368-01 12 49446436 49446436 A G KMT2D Missense_Mutation p.V390A 0.06 unknown(0) TCGA-BR-4368-01 12 49488122 49488122 G A DHH Silent p.G58G 0.19 TCGA-BR-4368-01 12 50039484 50039484 G A FMNL3 3'UTR 0.30 TCGA-BR-4368-01 12 51086785 51086785 G A DIP2B Missense_Mutation p.G570S 0.18 tolerated(0.47) benign(0.227) TCGA-BR-4368-01 12 52635388 52635388 C T KRT7 Missense_Mutation p.R276W 0.29 deleterious(0) probably_damaging(0.956) TCGA-BR-4368-01 12 52794311 52794311 C T KRT82 Silent p.E259E 0.26 TCGA-BR-4368-01 12 52841159 52841159 C A KRT6B Missense_Mutation p.G504C 0.24 tolerated(0.1) unknown(0) TCGA-BR-4368-01 12 52967139 52967139 C T KRT74 Silent p.R141R 0.13 TCGA-BR-4368-01 12 53680216 53680216 G A ESPL1 Silent p.L1232L 0.10 TCGA-BR-4368-01 12 53691682 53691682 G A PFDN5 Missense_Mutation p.V86M 0.31 deleterious(0) probably_damaging(0.996) TCGA-BR-4368-01 12 53876462 53876462 C A MAP3K12 Missense_Mutation p.G709W 0.13 deleterious_low_confidence(0.03) possibly_damaging(0.567) TCGA-BR-4368-01 12 54338839 54338839 C T HOXC13 Silent p.R264R 0.33 TCGA-BR-4368-01 12 54686821 54686821 G A NFE2 Silent p.S153S 0.18 TCGA-BR-4368-01 12 54925553 54925553 A G NCKAP1L Missense_Mutation p.T909A 0.20 deleterious(0.03) probably_damaging(0.963) TCGA-BR-4368-01 12 55794998 55794998 C T OR6C65 Missense_Mutation p.A229V 0.17 tolerated_low_confidence(0.19) benign(0.042) TCGA-BR-4368-01 12 55846033 55846033 G T OR6C2 Silent p.L12L 0.16 TCGA-BR-4368-01 12 56429164 56429164 G T IKZF4 3'UTR 0.15 TCGA-BR-4368-01 12 56477656 56477656 G A ERBB3 Silent p.T68T 0.29 TCGA-BR-4368-01 12 56515173 56515173 G A ZC3H10 Missense_Mutation p.R276H 0.14 deleterious(0) probably_damaging(0.998) TCGA-BR-4368-01 12 56993616 56993616 C T BAZ2A Missense_Mutation p.R1683Q 0.12 deleterious(0) probably_damaging(0.974) TCGA-BR-4368-01 12 57033821 57033821 G T ATP5B Silent p.P410P 0.34 TCGA-BR-4368-01 12 57571281 57571281 G A LRP1 Missense_Mutation p.R1423H 0.20 probably_damaging(1) TCGA-BR-4368-01 12 57584720 57584720 C T LRP1 Silent p.A2388A 0.15 TCGA-BR-4368-01 12 57860075 57860075 G - GLI1 Frame_Shift_Del p.G274Afs*6 0.34 TCGA-BR-4368-01 12 6122709 6122709 C T VWF Missense_Mutation p.R1853Q 0.13 tolerated(0.25) benign(0.001) TCGA-BR-4368-01 12 62147455 62147455 G A FAM19A2 Missense_Mutation p.P111L 0.27 deleterious(0.04) probably_damaging(1) TCGA-BR-4368-01 12 64784109 64784109 G T C12orf56 Silent p.V79V 0.32 TCGA-BR-4368-01 12 65141602 65141603 - C GNS Frame_Shift_Ins p.N117Efs*4 0.16 TCGA-BR-4368-01 12 66605356 66605356 T C IRAK3 Silent p.Y189Y 0.09 TCGA-BR-4368-01 12 66788074 66788074 C - GRIP1 Frame_Shift_Del p.G632Afs*14 0.14 TCGA-BR-4368-01 12 675099 675099 C T NINJ2 Intron 0.14 TCGA-BR-4368-01 12 69229704 69229704 C T MDM2 Silent p.L260L 0.16 TCGA-BR-4368-01 12 69783974 69783974 A - YEATS4 Frame_Shift_Del p.T190Qfs*12 0.32 TCGA-BR-4368-01 12 70194001 70194001 T G RAB3IP Missense_Mutation p.L317V 0.14 tolerated(0.09) possibly_damaging(0.694) TCGA-BR-4368-01 12 7522128 7522128 G A CD163L1 Silent p.G1288G 0.36 TCGA-BR-4368-01 12 76442093 76442093 A - NAP1L1 3'UTR 0.33 TCGA-BR-4368-01 12 77436967 77436967 C T E2F7 Missense_Mutation p.R334H 0.11 deleterious(0) probably_damaging(0.999) TCGA-BR-4368-01 12 81799628 81799628 C T PPFIA2 Missense_Mutation p.E234K 0.17 tolerated(0.16) benign(0.04) TCGA-BR-4368-01 12 95694231 95694231 A G VEZT Missense_Mutation p.T708A 0.14 tolerated(0.86) benign(0) TCGA-BR-4368-01 12 96275317 96275317 G A CCDC38 Silent p.F312F 0.45 TCGA-BR-4368-01 12 96300205 96300205 T C CCDC38 Missense_Mutation p.H110R 0.11 tolerated(0.33) benign(0.005) TCGA-BR-4368-01 12 98927863 98927863 C T TMPO Missense_Mutation p.R610C 0.31 tolerated_low_confidence(0.13) benign(0.001) TCGA-BR-4368-01 13 101287385 101287385 G A TMTC4 Nonsense_Mutation p.R423* 0.15 TCGA-BR-4368-01 13 102250558 102250558 G T ITGBL1 Missense_Mutation p.K308N 0.19 tolerated(0.14) benign(0.007) TCGA-BR-4368-01 13 103518646 103518646 C T BIVM-ERCC5 Missense_Mutation p.A1171V 0.15 tolerated(0.52) benign(0.003) TCGA-BR-4368-01 13 107164918 107164918 C A EFNB2 Missense_Mutation p.W122L 0.24 deleterious(0.03) benign(0.198) TCGA-BR-4368-01 13 110838886 110838886 C T COL4A1 Silent p.L581L 0.22 TCGA-BR-4368-01 13 111371924 111371924 C T ING1 Missense_Mutation p.A305V 0.13 deleterious(0.04) benign(0.079) TCGA-BR-4368-01 13 111932912 111932912 C T ARHGEF7 Missense_Mutation p.S559L 0.24 tolerated(0.65) benign(0.36) TCGA-BR-4368-01 13 112722343 112722343 G A SOX1 Missense_Mutation p.R124H 0.19 deleterious(0) probably_damaging(0.995) TCGA-BR-4368-01 13 113768274 113768274 C T F7 Missense_Mutation p.H144Y 0.11 tolerated(1) benign(0.002) TCGA-BR-4368-01 13 114193765 114193765 G A TMCO3 Missense_Mutation p.A545T 0.23 tolerated(0.68) benign(0.002) TCGA-BR-4368-01 13 114523858 114523858 G - GAS6 Frame_Shift_Del p.V673Wfs*85 0.40 TCGA-BR-4368-01 13 20279895 20279895 A G PSPC1 Silent p.T431T 0.08 TCGA-BR-4368-01 13 21563291 21563291 G A LATS2 Missense_Mutation p.P210S 0.17 tolerated_low_confidence(0.08) benign(0.054) TCGA-BR-4368-01 13 23911749 23911749 G A SACS Missense_Mutation p.S2089L 0.20 benign(0.081) TCGA-BR-4368-01 13 25473679 25473679 C T CENPJ Missense_Mutation p.A957T 0.18 tolerated(0.11) benign(0.126) TCGA-BR-4368-01 13 25828013 25828013 G A MTMR6 Missense_Mutation p.P412L 0.18 deleterious(0) probably_damaging(0.997) TCGA-BR-4368-01 13 27664254 27664254 G A USP12 Silent p.D205D 0.19 TCGA-BR-4368-01 13 30097437 30097437 C T SLC7A1 Missense_Mutation p.V339M 0.16 deleterious(0.02) probably_damaging(1) TCGA-BR-4368-01 13 32913836 32913837 - A BRCA2 Frame_Shift_Ins p.N1784Kfs*3 0.16 TCGA-BR-4368-01 13 33344568 33344568 A - PDS5B Frame_Shift_Del p.G1314Efs*80 0.20 TCGA-BR-4368-01 13 33704275 33704275 G A STARD13 Missense_Mutation p.T180M 0.25 deleterious(0) probably_damaging(0.987) TCGA-BR-4368-01 13 38148746 38148746 C T POSTN Silent p.V684V 0.13 TCGA-BR-4368-01 13 49030368 49030368 A - RB1 Frame_Shift_Del p.G617Vfs*6 0.20 TCGA-BR-4368-01 13 49705409 49705409 C T FNDC3A Missense_Mutation p.P130L 0.15 tolerated(0.39) benign(0.135) TCGA-BR-4368-01 13 52605100 52605100 C T UTP14C Silent p.V720V 0.24 TCGA-BR-4368-01 13 52952361 52952361 C T THSD1 Missense_Mutation p.A582T 0.20 tolerated(0.08) benign(0.102) TCGA-BR-4368-01 13 52952664 52952664 C T THSD1 Missense_Mutation p.G481R 0.18 deleterious(0) possibly_damaging(0.602) TCGA-BR-4368-01 13 53422421 53422421 C T PCDH8 Missense_Mutation p.E51K 0.12 tolerated(0.86) benign(0.047) TCGA-BR-4368-01 13 58207121 58207121 G A PCDH17 Silent p.P147P 0.27 TCGA-BR-4368-01 13 58208648 58208648 G A PCDH17 Silent p.T656T 0.20 TCGA-BR-4368-01 13 61987429 61987429 C T PCDH20 Missense_Mutation p.R268H 0.26 deleterious(0.05) probably_damaging(0.946) TCGA-BR-4368-01 13 67477738 67477738 C T PCDH9 Splice_Site p.X1013_splice 0.14 TCGA-BR-4368-01 13 67801412 67801412 T G PCDH9 Silent p.T387T 0.23 TCGA-BR-4368-01 13 76432062 76432062 C T LMO7 Silent p.D1357D 0.19 TCGA-BR-4368-01 13 98671871 98671871 C T IPO5 Missense_Mutation p.A976V 0.26 deleterious(0.04) benign(0.192) TCGA-BR-4368-01 14 100616037 100616037 C T DEGS2 Silent p.P31P 0.23 TCGA-BR-4368-01 14 100801237 100801237 C A WARS Missense_Mutation p.R464L 0.12 deleterious(0) probably_damaging(0.996) TCGA-BR-4368-01 14 102452687 102452687 C T DYNC1H1 Missense_Mutation p.R709C 0.22 probably_damaging(0.982) TCGA-BR-4368-01 14 102466418 102466418 G A DYNC1H1 Silent p.K1299K 0.14 TCGA-BR-4368-01 14 102912234 102912234 A C TECPR2 Missense_Mutation p.T1009P 0.25 deleterious(0) probably_damaging(0.962) TCGA-BR-4368-01 14 105409888 105409888 T C AHNAK2 Missense_Mutation p.K3967R 0.16 probably_damaging(0.999) TCGA-BR-4368-01 14 105409965 105409965 T C AHNAK2 Silent p.P3941P 0.24 TCGA-BR-4368-01 14 105412039 105412039 C T AHNAK2 Missense_Mutation p.G3250D 0.13 benign(0.118) TCGA-BR-4368-01 14 106208248 106208248 T C IGHG1 Missense_Mutation p.T218A 0.05 tolerated(0.06) benign(0.019) TCGA-BR-4368-01 14 106667746 106667746 C A IGHV3-20 Missense_Mutation p.K62N 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.537) TCGA-BR-4368-01 14 107218747 107218747 C T IGHV3-74 Missense_Mutation p.A94T 0.17 deleterious_low_confidence(0.04) benign(0.043) TCGA-BR-4368-01 14 20444458 20444458 C T OR4K15 Missense_Mutation p.R261C 0.10 deleterious(0.03) benign(0.082) TCGA-BR-4368-01 14 23315098 23315098 C T MMP14 Silent p.G533G 0.28 TCGA-BR-4368-01 14 23745847 23745848 CT - HOMEZ Frame_Shift_Del p.H198Pfs*64 0.34 TCGA-BR-4368-01 14 24045135 24045135 G A JPH4 Missense_Mutation p.R304C 0.33 tolerated(0.09) probably_damaging(0.972) TCGA-BR-4368-01 14 24589026 24589026 G A DCAF11 Missense_Mutation p.R338H 0.22 deleterious(0) probably_damaging(0.996) TCGA-BR-4368-01 14 24842495 24842495 C T NFATC4 Missense_Mutation p.A556V 0.09 deleterious(0) possibly_damaging(0.621) TCGA-BR-4368-01 14 31582679 31582679 C T HECTD1 Silent p.E1956E 0.04 TCGA-BR-4368-01 14 35498275 35498275 G A SRP54 Missense_Mutation p.A478T 0.26 tolerated(0.09) benign(0.005) TCGA-BR-4368-01 14 38679662 38679662 C T SSTR1 Silent p.T356T 0.15 TCGA-BR-4368-01 14 39508238 39508238 C - SEC23A Frame_Shift_Del p.Q736Rfs*21 0.17 TCGA-BR-4368-01 14 42356185 42356185 C T LRFN5 Silent p.F119F 0.22 TCGA-BR-4368-01 14 45370057 45370058 - A C14orf28 Frame_Shift_Ins p.N142Kfs*3 0.17 TCGA-BR-4368-01 14 45542625 45542625 G A FAM179B Missense_Mutation p.R1675Q 0.16 deleterious(0) probably_damaging(0.924) TCGA-BR-4368-01 14 51111571 51111571 G A SAV1 Nonsense_Mutation p.R233* 0.18 TCGA-BR-4368-01 14 52782002 52782002 G - PTGER2 Frame_Shift_Del p.A247Pfs*23 0.22 TCGA-BR-4368-01 14 55310530 55310530 A - GCH1 3'UTR 0.16 TCGA-BR-4368-01 14 56137475 56137475 A - KTN1 Frame_Shift_Del p.K1101Rfs*18 0.17 TCGA-BR-4368-01 14 57268328 57268328 G A OTX2 3'UTR 0.29 TCGA-BR-4368-01 14 60063471 60063471 C T RTN1 Missense_Mutation p.A775T 0.04 tolerated(0.2) benign(0.033) TCGA-BR-4368-01 14 61446285 61446285 G A TRMT5 Nonsense_Mutation p.R111* 0.19 TCGA-BR-4368-01 14 64520155 64520155 C A SYNE2 Missense_Mutation p.P3175Q 0.30 probably_damaging(1) TCGA-BR-4368-01 14 66209091 66209091 C T FUT8 Missense_Mutation p.T564M 0.11 tolerated(0.08) benign(0.432) TCGA-BR-4368-01 14 67864541 67864541 G A PLEK2 Silent p.G15G 0.17 TCGA-BR-4368-01 14 68191306 68191306 G A RDH12 Missense_Mutation p.R62Q 0.31 deleterious(0) probably_damaging(0.997) TCGA-BR-4368-01 14 68215185 68215185 G - ZFYVE26 Frame_Shift_Del p.R2530Gfs*22 0.20 TCGA-BR-4368-01 14 69521511 69521511 G A DCAF5 Missense_Mutation p.S631L 0.23 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-BR-4368-01 14 69619670 69619670 C - DCAF5 Frame_Shift_Del p.G9Afs*3 0.17 TCGA-BR-4368-01 14 73140953 73140953 C T DPF3 Missense_Mutation p.R289H 0.20 deleterious(0) probably_damaging(0.923) TCGA-BR-4368-01 14 73425386 73425386 C T DCAF4 Missense_Mutation p.S454F 0.20 deleterious(0) probably_damaging(0.966) TCGA-BR-4368-01 14 74193655 74193655 C T ELMSAN1 Missense_Mutation p.R728Q 0.26 tolerated(0.07) benign(0.148) TCGA-BR-4368-01 14 74967607 74967607 G - LTBP2 Frame_Shift_Del p.H1816Tfs*32 0.43 TCGA-BR-4368-01 14 75017918 75017918 G - LTBP2 Frame_Shift_Del p.P512Rfs*45 0.25 TCGA-BR-4368-01 14 75201692 75201692 C A FCF1 3'UTR 0.16 TCGA-BR-4368-01 14 75276988 75276988 G A YLPM1 Missense_Mutation p.R1698H 0.17 possibly_damaging(0.908) TCGA-BR-4368-01 14 75513336 75513336 G A MLH3 Missense_Mutation p.P1008L 0.17 tolerated(0.44) benign(0) TCGA-BR-4368-01 14 77600239 77600239 G A ZDHHC22 Silent p.F193F 0.24 TCGA-BR-4368-01 14 77809701 77809701 G A TMED8 Missense_Mutation p.R194W 0.18 deleterious(0) probably_damaging(1) TCGA-BR-4368-01 14 77857438 77857438 G A SAMD15 Missense_Mutation p.G626S 0.22 deleterious(0) possibly_damaging(0.866) TCGA-BR-4368-01 14 79746672 79746672 G A NRXN3 Intron 0.21 TCGA-BR-4368-01 14 81609460 81609460 A G TSHR Missense_Mutation p.Y353C 0.05 tolerated(0.06) probably_damaging(0.951) TCGA-BR-4368-01 14 81943446 81943446 G A SEL1L Missense_Mutation p.A752V 0.13 tolerated(0.14) benign(0.045) TCGA-BR-4368-01 14 94776089 94776089 C T SERPINA6 Missense_Mutation p.A290T 0.16 tolerated(0.5) benign(0.001) TCGA-BR-4368-01 14 96134571 96134571 C A TCL6 Intron 0.20 TCGA-BR-4368-01 15 22999391 22999391 G A CYFIP1 Missense_Mutation p.C1088Y 0.31 deleterious(0.02) probably_damaging(0.961) TCGA-BR-4368-01 15 25924712 25924712 G - ATP10A Frame_Shift_Del p.L1426Cfs*66 0.24 TCGA-BR-4368-01 15 28419593 28419593 G A HERC2 Silent p.H3335H 0.10 TCGA-BR-4368-01 15 28473545 28473545 C T HERC2 Silent p.P1761P 0.27 TCGA-BR-4368-01 15 31206224 31206224 C T FAN1 Nonsense_Mutation p.R581* 0.24 TCGA-BR-4368-01 15 34145819 34145819 A - RYR3 Frame_Shift_Del p.N4580Mfs*8 0.20 TCGA-BR-4368-01 15 34652368 34652368 G C LPCAT4 Missense_Mutation p.L396V 0.21 tolerated(0.38) probably_damaging(0.957) TCGA-BR-4368-01 15 39874929 39874929 G - THBS1 Frame_Shift_Del p.G203Afs*13 0.10 TCGA-BR-4368-01 15 40700156 40700156 G A IVD Missense_Mutation p.G88R 0.17 deleterious(0) probably_damaging(1) TCGA-BR-4368-01 15 40912976 40912977 - A CASC5 Frame_Shift_Ins p.S200Vfs*12 0.18 TCGA-BR-4368-01 15 40915554 40915554 C T CASC5 Missense_Mutation p.A1057V 0.15 tolerated(0.12) possibly_damaging(0.759) TCGA-BR-4368-01 15 41191837 41191837 C - VPS18 Frame_Shift_Del p.K276Sfs*12 0.22 TCGA-BR-4368-01 15 42132848 42132848 G T PLA2G4B Missense_Mutation p.R301M 0.22 deleterious(0) possibly_damaging(0.639) TCGA-BR-4368-01 15 42134398 42134398 C A PLA2G4B Missense_Mutation p.P441H 0.23 deleterious(0.03) probably_damaging(0.947) TCGA-BR-4368-01 15 42681202 42681202 G T CAPN3 Nonsense_Mutation p.E237* 0.23 TCGA-BR-4368-01 15 42743249 42743249 C A ZNF106 Missense_Mutation p.L384F 0.23 tolerated(0.1) benign(0.111) TCGA-BR-4368-01 15 43044817 43044817 T - TTBK2 Frame_Shift_Del p.N876Ifs*10 0.19 TCGA-BR-4368-01 15 43585663 43585663 G T TGM7 Silent p.T59T 0.22 TCGA-BR-4368-01 15 43748297 43748297 G - TP53BP1 Frame_Shift_Del p.Q837Sfs*6 0.16 TCGA-BR-4368-01 15 43816368 43816368 C A MAP1A Silent p.S899S 0.17 TCGA-BR-4368-01 15 45454089 45454089 G A DUOX1 Missense_Mutation p.R1337Q 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-BR-4368-01 15 45694912 45694912 C T SPATA5L1 Silent p.S95S 0.33 TCGA-BR-4368-01 15 50271884 50271884 A G ATP8B4 Missense_Mutation p.S322P 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-BR-4368-01 15 52356399 52356399 C T MAPK6 Silent p.N456N 0.22 TCGA-BR-4368-01 15 55522599 55522599 C T RAB27A Missense_Mutation p.R80K 0.07 deleterious(0.01) probably_damaging(0.98) TCGA-BR-4368-01 15 59102469 59102469 C T FAM63B Missense_Mutation p.T335I 0.19 deleterious(0) probably_damaging(1) TCGA-BR-4368-01 15 63952005 63952005 G A HERC1 Silent p.S3118S 0.23 TCGA-BR-4368-01 15 65499120 65499120 C T CILP Missense_Mutation p.G142R 0.22 deleterious(0.02) probably_damaging(1) TCGA-BR-4368-01 15 65739248 65739248 G A DPP8 Missense_Mutation p.R891C 0.14 deleterious_low_confidence(0) possibly_damaging(0.817) TCGA-BR-4368-01 15 66629397 66629397 C T TIPIN Missense_Mutation p.A269T 0.20 tolerated_low_confidence(0.13) benign(0.01) TCGA-BR-4368-01 15 67477177 67477177 G A SMAD3 Silent p.P328P 0.29 TCGA-BR-4368-01 15 68118543 68118543 C T SKOR1 Missense_Mutation p.T312M 0.18 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-BR-4368-01 15 72190884 72190884 A G MYO9A Silent p.G1320G 0.16 TCGA-BR-4368-01 15 72637826 72637826 G A HEXA Missense_Mutation p.A496V 0.23 deleterious(0.01) probably_damaging(0.987) TCGA-BR-4368-01 15 74425464 74425464 C T ISLR2 Silent p.S123S 0.13 TCGA-BR-4368-01 15 75117834 75117834 G A LMAN1L Missense_Mutation p.S490N 0.20 tolerated(0.43) benign(0.004) TCGA-BR-4368-01 15 75968944 75968944 C T CSPG4 Silent p.R1972R 0.08 TCGA-BR-4368-01 15 79083119 79083119 C T ADAMTS7 Silent p.T307T 0.28 TCGA-BR-4368-01 15 83334219 83334219 C T AP3B2 Missense_Mutation p.R654H 0.15 deleterious(0) probably_damaging(0.931) TCGA-BR-4368-01 15 86123335 86123335 T C AKAP13 Missense_Mutation p.V679A 0.04 tolerated_low_confidence(1) benign(0.002) TCGA-BR-4368-01 15 86311780 86311780 G A KLHL25 Missense_Mutation p.A421V 0.09 deleterious(0.04) benign(0.003) TCGA-BR-4368-01 15 90171797 90171797 C T KIF7 Silent p.Q1295Q 0.12 TCGA-BR-4368-01 15 93015505 93015505 C - C15orf32 Frame_Shift_Del p.P44Lfs*18 0.23 TCGA-BR-4368-01 16 11773386 11773386 G T TXNDC11 Missense_Mutation p.Q848K 0.28 tolerated(0.13) benign(0.166) TCGA-BR-4368-01 16 1411874 1411874 T C GNPTG Missense_Mutation p.Y79H 0.42 deleterious(0) probably_damaging(0.995) TCGA-BR-4368-01 16 19051753 19051753 G A TMC7 Missense_Mutation p.R441H 0.32 deleterious(0.03) possibly_damaging(0.77) TCGA-BR-4368-01 16 19883732 19883732 G A GPRC5B Missense_Mutation p.R146C 0.21 deleterious(0.01) probably_damaging(1) TCGA-BR-4368-01 16 2024837 2024837 C T TBL3 Silent p.P151P 0.20 TCGA-BR-4368-01 16 21170726 21170726 C T DNAH3 Missense_Mutation p.A13T 0.18 tolerated_low_confidence(0.1) benign(0) TCGA-BR-4368-01 16 21216851 21216851 T G ZP2 Missense_Mutation p.K195Q 0.36 tolerated(0.77) benign(0.004) TCGA-BR-4368-01 16 2158560 2158560 C T PKD1 Missense_Mutation p.R2203H 0.33 benign(0.082) TCGA-BR-4368-01 16 2163281 2163281 C T PKD1 Missense_Mutation p.V956M 0.11 benign(0.104) TCGA-BR-4368-01 16 22291646 22291646 G A EEF2K Missense_Mutation p.E673K 0.30 deleterious(0.03) benign(0.139) TCGA-BR-4368-01 16 23091344 23091344 C A USP31 Missense_Mutation p.R700M 0.13 deleterious(0.01) probably_damaging(1) TCGA-BR-4368-01 16 23444982 23444982 G A COG7 Missense_Mutation p.L232F 0.25 deleterious(0.02) probably_damaging(0.927) TCGA-BR-4368-01 16 23637590 23637590 C T PALB2 Silent p.Q905Q 0.09 TCGA-BR-4368-01 16 24762058 24762060 AAG - TNRC6A In_Frame_Del p.E25del 0.24 TCGA-BR-4368-01 16 25123281 25123281 T C LCMT1 Missense_Mutation p.V26A 0.28 deleterious(0) probably_damaging(0.998) TCGA-BR-4368-01 16 27556722 27556722 C T GTF3C1 Missense_Mutation p.R115H 0.37 tolerated(0.05) possibly_damaging(0.488) TCGA-BR-4368-01 16 28946835 28946835 C T CD19 Silent p.F302F 0.04 TCGA-BR-4368-01 16 29825505 29825505 C - PRRT2 Intron 0.22 TCGA-BR-4368-01 16 30780556 30780556 A G RNF40 Missense_Mutation p.E766G 0.33 deleterious(0) probably_damaging(0.996) TCGA-BR-4368-01 16 30990956 30990956 G A SETD1A Silent p.S1283S 0.15 TCGA-BR-4368-01 16 30999231 30999231 C T HSD3B7 Silent p.C279C 0.16 TCGA-BR-4368-01 16 31072373 31072374 - G ZNF668 3'UTR 0.34 TCGA-BR-4368-01 16 31073185 31073185 G A ZNF668 Missense_Mutation p.A378V 0.32 tolerated(0.14) benign(0.294) TCGA-BR-4368-01 16 31212940 31212941 TG - PYCARD Frame_Shift_Del p.Q185Vfs*44 0.30 TCGA-BR-4368-01 16 31336659 31336659 C A ITGAM Silent p.S814S 0.14 TCGA-BR-4368-01 16 31422507 31422507 C G ITGAD Silent p.G489G 0.38 TCGA-BR-4368-01 16 31926819 31926819 T C ZNF267 Missense_Mutation p.F417L 0.07 deleterious(0) probably_damaging(0.97) TCGA-BR-4368-01 16 3405968 3405968 C T OR2C1 Nonsense_Mutation p.Q10* 0.36 TCGA-BR-4368-01 16 3458393 3458393 C T ZNF174 Missense_Mutation p.A233V 0.15 tolerated(0.31) benign(0.001) TCGA-BR-4368-01 16 3591813 3591813 C T NLRC3 3'UTR 0.22 TCGA-BR-4368-01 16 3640516 3640516 C T SLX4 Silent p.Q1041Q 0.34 TCGA-BR-4368-01 16 3652290 3652290 G - SLX4 Frame_Shift_Del p.P260Lfs*11 0.24 TCGA-BR-4368-01 16 3736128 3736128 G A TRAP1 Missense_Mutation p.R114W 0.30 deleterious(0) probably_damaging(1) TCGA-BR-4368-01 16 3777898 3777898 G - CREBBP Frame_Shift_Del p.H2384Tfs*12 0.28 TCGA-BR-4368-01 16 396309 396309 C T AXIN1 Silent p.P239P 0.15 TCGA-BR-4368-01 16 4164370 4164370 G A ADCY9 Silent p.V358V 0.39 TCGA-BR-4368-01 16 4410338 4410338 G A CORO7 Silent p.R683R 0.23 TCGA-BR-4368-01 16 461554 461554 C T DECR2 Silent p.F285F 0.45 TCGA-BR-4368-01 16 47733408 47733408 C T PHKB 3'UTR 0.48 TCGA-BR-4368-01 16 50744556 50744556 C T NOD2 Missense_Mutation p.T245M 0.38 deleterious(0.03) benign(0.001) TCGA-BR-4368-01 16 55893467 55893467 G A CES5A Silent p.L379L 0.37 TCGA-BR-4368-01 16 56485630 56485630 A - OGFOD1 Frame_Shift_Del p.K37Sfs*29 0.40 TCGA-BR-4368-01 16 57689865 57689865 G A GPR56 Silent p.T326T 0.16 TCGA-BR-4368-01 16 58031166 58031166 C T ZNF319 Missense_Mutation p.R335H 0.26 deleterious(0) probably_damaging(0.999) TCGA-BR-4368-01 16 58031252 58031252 C T ZNF319 Silent p.P306P 0.35 TCGA-BR-4368-01 16 66612963 66612963 C - CMTM1 3'UTR 0.19 TCGA-BR-4368-01 16 66776563 66776563 G A DYNC1LI2 Missense_Mutation p.R103C 0.37 deleterious(0) probably_damaging(0.999) TCGA-BR-4368-01 16 66974560 66974560 C T CES2 Missense_Mutation p.P324S 0.11 tolerated(0.06) possibly_damaging(0.858) TCGA-BR-4368-01 16 67037211 67037211 A T CES4A Missense_Mutation p.N283I 0.10 deleterious(0) possibly_damaging(0.461) TCGA-BR-4368-01 16 67183117 67183117 A G B3GNT9 3'UTR 0.41 TCGA-BR-4368-01 16 67320703 67320703 C T PLEKHG4 Missense_Mutation p.R936C 0.20 tolerated(0.21) benign(0.002) TCGA-BR-4368-01 16 67487596 67487596 G A ATP6V0D1 Silent p.S51S 0.30 TCGA-BR-4368-01 16 67913593 67913593 C T EDC4 Silent p.A579A 0.15 TCGA-BR-4368-01 16 68056553 68056553 G A DDX28 Missense_Mutation p.P185S 0.10 deleterious(0.02) possibly_damaging(0.9) TCGA-BR-4368-01 16 68104958 68104958 C T DUS2 Missense_Mutation p.L253F 0.11 deleterious(0.01) possibly_damaging(0.793) TCGA-BR-4368-01 16 68321694 68321694 G A SLC7A6 Missense_Mutation p.R190H 0.31 deleterious(0.01) benign(0.18) TCGA-BR-4368-01 16 683373 683373 G A WFIKKN1 Silent p.P321P 0.36 TCGA-BR-4368-01 16 69959257 69959257 T - WWP2 Intron 0.23 TCGA-BR-4368-01 16 70363861 70363861 G A DDX19B Missense_Mutation p.D305N 0.19 tolerated(0.17) benign(0.307) TCGA-BR-4368-01 16 70398525 70398525 G A DDX19A Missense_Mutation p.E156K 0.13 deleterious(0.02) benign(0.075) TCGA-BR-4368-01 16 71317774 71317774 C T CMTR2 Missense_Mutation p.A684T 0.15 tolerated(0.17) benign(0.016) TCGA-BR-4368-01 16 71894461 71894461 T C ZNF821 Silent p.G233G 0.31 TCGA-BR-4368-01 16 72822157 72822157 C A ZFHX3 Missense_Mutation p.G3340C 0.33 unknown(0) TCGA-BR-4368-01 16 84163662 84163662 C T HSDL1 Missense_Mutation p.A199T 0.05 deleterious(0) probably_damaging(0.993) TCGA-BR-4368-01 16 84806187 84806187 C A USP10 Missense_Mutation p.P680H 0.04 deleterious(0) probably_damaging(0.999) TCGA-BR-4368-01 16 85701834 85701834 C T GSE1 Silent p.R1073R 0.05 TCGA-BR-4368-01 16 88599110 88599110 G A ZFPM1 Silent p.T345T 0.16 TCGA-BR-4368-01 16 89349001 89349001 G A ANKRD11 Silent p.L1317L 0.15 TCGA-BR-4368-01 16 89352509 89352509 G A ANKRD11 Missense_Mutation p.P277L 0.36 probably_damaging(0.995) TCGA-BR-4368-01 16 89763857 89763857 G A SPATA2L Missense_Mutation p.A387V 0.36 tolerated(0.21) benign(0.004) TCGA-BR-4368-01 16 89777784 89777784 T C VPS9D1 Missense_Mutation p.N262D 0.22 tolerated(0.07) benign(0.166) TCGA-BR-4368-01 16 89970558 89970558 C T TCF25 Missense_Mutation p.R472W 0.54 deleterious(0) probably_damaging(0.97) TCGA-BR-4368-01 16 90001975 90001975 G A TUBB3 Silent p.T372T 0.19 TCGA-BR-4368-01 17 10248525 10248525 G A MYH13 Silent p.I526I 0.17 TCGA-BR-4368-01 17 10608264 10608264 T C ADPRM Silent p.P7P 0.04 TCGA-BR-4368-01 17 11775045 11775045 A G DNAH9 Missense_Mutation p.K3395R 0.27 benign(0.042) TCGA-BR-4368-01 17 12639605 12639605 C T MYOCD Silent p.D181D 0.16 TCGA-BR-4368-01 17 1520045 1520045 G A SLC43A2 Missense_Mutation p.T60I 0.20 deleterious(0.05) benign(0.049) TCGA-BR-4368-01 17 1584919 1584919 C T PRPF8 Missense_Mutation p.R240H 0.15 deleterious(0.03) possibly_damaging(0.901) TCGA-BR-4368-01 17 15881245 15881245 A G ZSWIM7 3'UTR 0.29 TCGA-BR-4368-01 17 15935741 15935741 G A NCOR1 Missense_Mutation p.P2398S 0.24 probably_damaging(0.998) TCGA-BR-4368-01 17 16325986 16325986 G A TRPV2 Silent p.L136L 0.15 TCGA-BR-4368-01 17 17250190 17250190 C - NT5M Frame_Shift_Del p.R208Afs*34 0.21 TCGA-BR-4368-01 17 17698291 17698291 G T RAI1 Missense_Mutation p.G677C 0.24 deleterious(0.02) possibly_damaging(0.653) TCGA-BR-4368-01 17 18023293 18023293 C - MYO15A Frame_Shift_Del p.E396Rfs*48 0.23 TCGA-BR-4368-01 17 18647574 18647574 C T FBXW10 Missense_Mutation p.S6L 0.26 tolerated(0.65) benign(0.004) TCGA-BR-4368-01 17 18653318 18653318 T C FBXW10 Intron 0.17 TCGA-BR-4368-01 17 2203910 2203910 C T SMG6 Missense_Mutation p.R46H 0.18 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-BR-4368-01 17 2601713 2601713 C - CLUH Frame_Shift_Del p.D442Tfs*12 0.38 TCGA-BR-4368-01 17 26941928 26941928 C T KIAA0100 3'UTR 0.21 TCGA-BR-4368-01 17 26960768 26960768 C T KIAA0100 Silent p.S1088S 0.26 TCGA-BR-4368-01 17 27086113 27086113 A T FAM222B Nonsense_Mutation p.C288* 0.33 TCGA-BR-4368-01 17 27577216 27577218 AGG - CRYBA1 In_Frame_Del p.E39del 0.23 TCGA-BR-4368-01 17 30310094 30310094 G A SUZ12 Missense_Mutation p.A332T 0.11 tolerated(0.11) probably_damaging(0.998) TCGA-BR-4368-01 17 30616026 30616026 G A RHBDL3 Silent p.T170T 0.22 TCGA-BR-4368-01 17 31618468 31618468 G A ASIC2 Silent p.C222C 0.31 TCGA-BR-4368-01 17 32684573 32684573 G A CCL13 Silent p.V52V 0.04 TCGA-BR-4368-01 17 32963111 32963111 C T TMEM132E Missense_Mutation p.A598V 0.17 tolerated(1) benign(0.046) TCGA-BR-4368-01 17 33585942 33585942 T C SLFN5 Missense_Mutation p.V78A 0.18 deleterious(0.03) benign(0.031) TCGA-BR-4368-01 17 34261748 34261748 T C LYZL6 3'UTR 0.15 TCGA-BR-4368-01 17 3436182 3436182 C T TRPV3 Silent p.V278V 0.23 TCGA-BR-4368-01 17 35470033 35470033 G A ACACA Nonsense_Mutation p.R2148* 0.31 TCGA-BR-4368-01 17 3577075 3577075 C T P2RX5 3'UTR 0.20 TCGA-BR-4368-01 17 37900851 37900851 G A GRB7 Missense_Mutation p.V306M 0.15 tolerated(0.08) benign(0.21) TCGA-BR-4368-01 17 37947745 37947745 T G IKZF3 Missense_Mutation p.K172N 0.21 deleterious(0) probably_damaging(0.999) TCGA-BR-4368-01 17 38325905 38325905 A G CASC3 3'UTR 0.15 TCGA-BR-4368-01 17 38487463 38487463 C T RARA 5'UTR 0.22 TCGA-BR-4368-01 17 38922702 38922702 G A KRT26 3'UTR 0.21 TCGA-BR-4368-01 17 39551538 39551538 C T KRT31 Missense_Mutation p.V279I 0.20 tolerated(0.07) benign(0.256) TCGA-BR-4368-01 17 40134291 40134291 C T DNAJC7 Missense_Mutation p.A405T 0.19 deleterious(0) probably_damaging(1) TCGA-BR-4368-01 17 4020386 4020386 G A ZZEF1 Missense_Mutation p.R192C 0.27 deleterious(0) probably_damaging(1) TCGA-BR-4368-01 17 41477713 41477713 C - ARL4D 3'UTR 0.31 TCGA-BR-4368-01 17 41561398 41561398 C T DHX8 5'UTR 0.12 TCGA-BR-4368-01 17 42090431 42090431 G A TMEM101 Silent p.S137S 0.13 TCGA-BR-4368-01 17 42635524 42635524 C T FZD2 Silent p.S156S 0.16 TCGA-BR-4368-01 17 42987609 42987609 G A GFAP 3'Flank 0.16 TCGA-BR-4368-01 17 43044868 43044868 G A C1QL1 Silent p.R183R 0.15 TCGA-BR-4368-01 17 43195441 43195441 C T PLCD3 Missense_Mutation p.V394I 0.21 tolerated(0.76) benign(0.03) TCGA-BR-4368-01 17 45822678 45822678 T G TBX21 Silent p.P518P 0.12 TCGA-BR-4368-01 17 46629792 46629792 G A HOXB3 Silent p.F15F 0.20 TCGA-BR-4368-01 17 47118830 47118830 G T IGF2BP1 Missense_Mutation p.E303D 0.19 tolerated(0.08) possibly_damaging(0.744) TCGA-BR-4368-01 17 4862892 4862892 C T SPAG7 Missense_Mutation p.M207I 0.20 deleterious(0.01) benign(0.23) TCGA-BR-4368-01 17 49057256 49057256 C A SPAG9 Missense_Mutation p.R1087M 0.17 deleterious(0) probably_damaging(0.987) TCGA-BR-4368-01 17 4995874 4995874 C T ZFP3 Missense_Mutation p.H359Y 0.07 deleterious(0) probably_damaging(0.999) TCGA-BR-4368-01 17 5050419 5050419 C T USP6 Silent p.S787S 0.12 TCGA-BR-4368-01 17 53851106 53851106 C T PCTP Nonsense_Mutation p.R121* 0.36 TCGA-BR-4368-01 17 54972887 54972887 A G TRIM25 Missense_Mutation p.L420S 0.21 tolerated(0.81) benign(0.005) TCGA-BR-4368-01 17 55078244 55078246 GGA - SCPEP1 In_Frame_Del p.E343del 0.36 TCGA-BR-4368-01 17 55191844 55191844 G A AKAP1 Missense_Mutation p.V710M 0.26 deleterious(0) probably_damaging(0.973) TCGA-BR-4368-01 17 56342193 56342193 C A LPO Silent p.V459V 0.23 TCGA-BR-4368-01 17 56435035 56435035 C T RNF43 Missense_Mutation p.C701Y 0.10 tolerated_low_confidence(0.09) benign(0.008) TCGA-BR-4368-01 17 56435161 56435161 C - RNF43 Frame_Shift_Del p.G659Vfs*41 0.23 TCGA-BR-4368-01 17 56435709 56435709 A G RNF43 Silent p.S476S 0.20 TCGA-BR-4368-01 17 56642289 56642289 T - TEX14 Frame_Shift_Del p.E1382Kfs*82 0.17 TCGA-BR-4368-01 17 57134370 57134370 A G TRIM37 Silent p.P355P 0.17 TCGA-BR-4368-01 17 58288786 58288786 G A USP32 Missense_Mutation p.P757S 0.21 deleterious(0) probably_damaging(0.997) TCGA-BR-4368-01 17 61657271 61657271 C T DCAF7 Intron 0.13 TCGA-BR-4368-01 17 61897110 61897110 C T FTSJ3 3'UTR 0.16 TCGA-BR-4368-01 17 61988105 61988105 C A CSHL1 Nonsense_Mutation p.E64* 0.21 TCGA-BR-4368-01 17 62481916 62481916 G T POLG2 Missense_Mutation p.L347M 0.15 tolerated(0.19) probably_damaging(0.928) TCGA-BR-4368-01 17 62496298 62496298 T - DDX5 Frame_Shift_Del p.T530Lfs*59 0.26 TCGA-BR-4368-01 17 62758055 62758055 C T hsa-mir-6080 RNA 0.10 TCGA-BR-4368-01 17 62856577 62856577 G A LRRC37A3 Silent p.N1229N 0.22 TCGA-BR-4368-01 17 65850305 65850305 T C BPTF Missense_Mutation p.V288A 0.22 possibly_damaging(0.653) TCGA-BR-4368-01 17 67260957 67260957 A - ABCA5 Frame_Shift_Del p.F1078Lfs*6 0.17 TCGA-BR-4368-01 17 71282556 71282556 G A CDC42EP4 Silent p.S28S 0.19 TCGA-BR-4368-01 17 7139893 7139893 C T PHF23 Missense_Mutation p.R118H 0.18 deleterious(0.04) benign(0) TCGA-BR-4368-01 17 7140733 7140733 A G PHF23 Missense_Mutation p.Y44H 0.24 deleterious(0) probably_damaging(0.969) TCGA-BR-4368-01 17 72436848 72436848 C A GPRC5C Missense_Mutation p.S356R 0.23 tolerated(0.14) possibly_damaging(0.465) TCGA-BR-4368-01 17 72667706 72667706 C T CTD-2006K23.2 3'Flank 0.26 TCGA-BR-4368-01 17 7291907 7291907 T C TNK1 Missense_Mutation p.W559R 0.25 tolerated(0.38) benign(0.004) TCGA-BR-4368-01 17 72937882 72937882 C T OTOP3 Silent p.H156H 0.12 TCGA-BR-4368-01 17 72942905 72942905 G A OTOP3 Missense_Mutation p.V319M 0.20 tolerated(0.21) possibly_damaging(0.564) TCGA-BR-4368-01 17 73738521 73738521 C - ITGB4 Frame_Shift_Del p.H912Tfs*68 0.30 TCGA-BR-4368-01 17 74623163 74623163 G A ST6GALNAC1 Silent p.H386H 0.11 TCGA-BR-4368-01 17 7466947 7466947 G A SENP3 Missense_Mutation p.R185H 0.20 deleterious_low_confidence(0.03) benign(0.277) TCGA-BR-4368-01 17 76396831 76396831 G A PGS1 Missense_Mutation p.A259T 0.16 deleterious(0.03) possibly_damaging(0.745) TCGA-BR-4368-01 17 7644225 7644225 C A DNAH2 Missense_Mutation p.P535Q 0.27 benign(0.167) TCGA-BR-4368-01 17 76696462 76696462 C T CYTH1 Silent p.A167A 0.33 TCGA-BR-4368-01 17 78086728 78086728 G A GAA Missense_Mutation p.G648S 0.22 deleterious(0) probably_damaging(1) TCGA-BR-4368-01 17 78091429 78091429 C - GAA Frame_Shift_Del p.P789Hfs*17 0.24 TCGA-BR-4368-01 17 78195443 78195443 G A SLC26A11 Silent p.A28A 0.22 TCGA-BR-4368-01 17 78293112 78293112 G T RNF213 Missense_Mutation p.Q1008H 0.22 probably_damaging(0.966) TCGA-BR-4368-01 17 78337427 78337427 G A RNF213 Missense_Mutation p.A3863T 0.13 possibly_damaging(0.536) TCGA-BR-4368-01 17 78882653 78882653 T C RPTOR Missense_Mutation p.L815P 0.21 deleterious(0) probably_damaging(0.987) TCGA-BR-4368-01 17 79205464 79205464 A G ENTHD2 Silent p.C243C 0.34 TCGA-BR-4368-01 17 7976012 7976013 - T ALOX12B 3'UTR 0.14 TCGA-BR-4368-01 17 80015927 80015927 C T DUS1L 3'UTR 0.15 TCGA-BR-4368-01 17 80361822 80361822 G A OGFOD3 Silent p.H230H 0.19 TCGA-BR-4368-01 17 8194159 8194159 C T SLC25A35 Splice_Site p.X243_splice 0.26 TCGA-BR-4368-01 17 8417117 8417117 C T MYH10 Missense_Mutation p.R867Q 0.20 probably_damaging(0.996) TCGA-BR-4368-01 17 8731436 8731436 G A PIK3R6 Missense_Mutation p.A462V 0.35 tolerated(0.07) benign(0.245) TCGA-BR-4368-01 18 12308306 12308306 G A TUBB6 Silent p.V5V 0.26 TCGA-BR-4368-01 18 13056468 13056468 C T CEP192 Silent p.G1293G 0.25 TCGA-BR-4368-01 18 13885348 13885348 G A MC2R Missense_Mutation p.A57V 0.25 deleterious(0.02) benign(0.001) TCGA-BR-4368-01 18 14542696 14542697 - C POTEC Frame_Shift_Ins p.K151* 0.21 TCGA-BR-4368-01 18 211247 211247 G A USP14 Missense_Mutation p.R483H 0.19 deleterious(0) probably_damaging(0.983) TCGA-BR-4368-01 18 22805411 22805411 A G ZNF521 Missense_Mutation p.L824S 0.23 deleterious(0) probably_damaging(1) TCGA-BR-4368-01 18 23845164 23845164 C T TAF4B Missense_Mutation p.P125L 0.18 deleterious(0) benign(0.018) TCGA-BR-4368-01 18 28605830 28605830 G A DSC3 Missense_Mutation p.R176C 0.35 deleterious(0) probably_damaging(0.976) TCGA-BR-4368-01 18 29036431 29036431 G A DSG3 Missense_Mutation p.R26Q 0.21 tolerated(0.52) benign(0.009) TCGA-BR-4368-01 18 34205516 34205516 C - FHOD3 Frame_Shift_Del p.S336Vfs*138 0.23 TCGA-BR-4368-01 18 34340718 34340718 G A FHOD3 Missense_Mutation p.V1350I 0.35 tolerated(0.42) benign(0.003) TCGA-BR-4368-01 18 3879415 3879415 G - DLGAP1 Frame_Shift_Del p.S219Rfs*3 0.25 TCGA-BR-4368-01 18 40857246 40857246 T - SYT4 Frame_Shift_Del p.M1? 0.30 TCGA-BR-4368-01 18 42530073 42530073 C A SETBP1 Silent p.P256P 0.21 TCGA-BR-4368-01 18 42643634 42643634 C T SETBP1 Nonsense_Mutation p.R1588* 0.32 TCGA-BR-4368-01 18 43579446 43579446 C T PSTPIP2 Missense_Mutation p.V158I 0.19 tolerated(0.12) benign(0.082) TCGA-BR-4368-01 18 44601710 44601710 G A KATNAL2 Silent p.S285S 0.10 TCGA-BR-4368-01 18 46448038 46448038 C T SMAD7 Missense_Mutation p.G329S 0.15 deleterious(0) possibly_damaging(0.801) TCGA-BR-4368-01 18 51750459 51750459 G - MBD2 Frame_Shift_Del p.G158Dfs*7 0.22 TCGA-BR-4368-01 18 5410606 5410606 G A EPB41L3 Missense_Mutation p.R694C 0.24 deleterious(0) possibly_damaging(0.677) TCGA-BR-4368-01 18 59936122 59936122 G A KIAA1468 Missense_Mutation p.V901I 0.37 tolerated(0.53) possibly_damaging(0.491) TCGA-BR-4368-01 18 65180208 65180208 A G DSEL Silent p.H556H 0.22 TCGA-BR-4368-01 18 70209175 70209175 G A CBLN2 Missense_Mutation p.A74V 0.21 deleterious(0.04) benign(0.007) TCGA-BR-4368-01 18 77193701 77193701 C G NFATC1 Missense_Mutation p.A437G 0.28 deleterious(0.01) benign(0.265) TCGA-BR-4368-01 18 77664092 77664092 C T PQLC1 Missense_Mutation p.G234S 0.22 deleterious(0.03) possibly_damaging(0.731) TCGA-BR-4368-01 19 10381850 10381850 C - ICAM1 Frame_Shift_Del p.R7Gfs*40 0.15 TCGA-BR-4368-01 19 10426107 10426107 C - FDX1L Frame_Shift_Del p.D88Tfs*31 0.23 TCGA-BR-4368-01 19 10446011 10446011 G - ICAM3 Frame_Shift_Del p.P223Rfs*21 0.48 TCGA-BR-4368-01 19 11224014 11224014 G A LDLR Missense_Mutation p.R416Q 0.22 deleterious(0.01) possibly_damaging(0.735) TCGA-BR-4368-01 19 11493831 11493831 C T EPOR Missense_Mutation p.E65K 0.16 deleterious(0) probably_damaging(0.994) TCGA-BR-4368-01 19 11944008 11944008 A G ZNF440 3'UTR 0.23 TCGA-BR-4368-01 19 13080535 13080535 T C DAND5 Missense_Mutation p.S21P 0.13 tolerated(0.06) possibly_damaging(0.823) TCGA-BR-4368-01 19 13084382 13084382 C A DAND5 Silent p.A168A 0.24 TCGA-BR-4368-01 19 13220273 13220273 G A TRMT1 Missense_Mutation p.P440L 0.21 tolerated(0.17) benign(0.009) TCGA-BR-4368-01 19 13419248 13419248 C T CACNA1A Missense_Mutation p.R588H 0.19 probably_damaging(0.984) TCGA-BR-4368-01 19 15302821 15302821 C - NOTCH3 Frame_Shift_Del p.G210Afs*26 0.27 TCGA-BR-4368-01 19 1581136 1581136 G A MBD3 Missense_Mutation p.T211M 0.25 tolerated(0.08) probably_damaging(0.94) TCGA-BR-4368-01 19 15918055 15918055 T C OR10H1 Missense_Mutation p.S265G 0.11 tolerated(0.64) benign(0) TCGA-BR-4368-01 19 16980447 16980447 G C SIN3B Missense_Mutation p.Q693H 0.17 tolerated(1) benign(0.001) TCGA-BR-4368-01 19 17343237 17343237 G A NR2F6 Missense_Mutation p.T380M 0.23 deleterious(0.01) probably_damaging(1) TCGA-BR-4368-01 19 17441686 17441686 G A ANO8 Missense_Mutation p.T315M 0.21 deleterious(0) probably_damaging(0.999) TCGA-BR-4368-01 19 18724982 18724982 G A TMEM59L Missense_Mutation p.A129T 0.31 tolerated(0.11) benign(0.008) TCGA-BR-4368-01 19 18967769 18967769 C T UPF1 Silent p.D636D 0.11 TCGA-BR-4368-01 19 1969844 1969844 C T CSNK1G2 Missense_Mutation p.R25W 0.27 deleterious_low_confidence(0) probably_damaging(0.927) TCGA-BR-4368-01 19 2421894 2421894 G A TMPRSS9 Missense_Mutation p.V699M 0.20 deleterious(0.05) possibly_damaging(0.473) TCGA-BR-4368-01 19 2733010 2733010 G A SLC39A3 Silent p.D228D 0.27 TCGA-BR-4368-01 19 308804 308804 G A MIER2 Missense_Mutation p.T369I 0.24 deleterious(0.01) benign(0.009) TCGA-BR-4368-01 19 30936135 30936135 G A ZNF536 Missense_Mutation p.G556R 0.21 deleterious(0.01) probably_damaging(1) TCGA-BR-4368-01 19 31039610 31039610 G T ZNF536 Silent p.A1028A 0.20 TCGA-BR-4368-01 19 31039805 31039805 C T ZNF536 Silent p.S1093S 0.14 TCGA-BR-4368-01 19 33355638 33355638 A G SLC7A9 Silent p.I44I 0.25 TCGA-BR-4368-01 19 34002042 34002042 G A PEPD Missense_Mutation p.A74V 0.17 tolerated(0.49) benign(0.004) TCGA-BR-4368-01 19 34297866 34297866 T C KCTD15 Missense_Mutation p.L114P 0.17 deleterious(0) probably_damaging(0.994) TCGA-BR-4368-01 19 34895868 34895868 G A RP11-618P17.4 Silent p.V132V 0.21 TCGA-BR-4368-01 19 3496662 3496662 A G DOHH Missense_Mutation p.S51P 0.18 deleterious(0) probably_damaging(1) TCGA-BR-4368-01 19 35233044 35233044 T C ZNF181 3'UTR 0.22 TCGA-BR-4368-01 19 35435665 35435665 A - ZNF30 Frame_Shift_Del p.K601Nfs*16 0.26 TCGA-BR-4368-01 19 3546152 3546152 G A MFSD12 Silent p.F403F 0.22 TCGA-BR-4368-01 19 3547329 3547329 G T MFSD12 Missense_Mutation p.L322I 0.17 benign(0.023) TCGA-BR-4368-01 19 3595861 3595861 G A TBXA2R Missense_Mutation p.T286M 0.14 tolerated(0.16) possibly_damaging(0.742) TCGA-BR-4368-01 19 3613306 3613306 G A CACTIN Silent p.P512P 0.15 TCGA-BR-4368-01 19 3624077 3624077 C A CACTIN Missense_Mutation p.G84V 0.23 tolerated_low_confidence(0.29) unknown(0) TCGA-BR-4368-01 19 36271669 36271669 C - ARHGAP33 Frame_Shift_Del p.P262Hfs*13 0.22 TCGA-BR-4368-01 19 37310215 37310215 C A ZNF790 Missense_Mutation p.G344V 0.20 deleterious(0) probably_damaging(0.996) TCGA-BR-4368-01 19 3734422 3734422 C T TJP3 Silent p.T334T 0.17 TCGA-BR-4368-01 19 37383204 37383204 C A ZNF829 Missense_Mutation p.K244N 0.19 deleterious(0.02) benign(0.386) TCGA-BR-4368-01 19 3746525 3746525 C T TJP3 Missense_Mutation p.R694C 0.25 deleterious(0.02) benign(0.171) TCGA-BR-4368-01 19 37854119 37854119 C T HKR1 Silent p.C474C 0.17 TCGA-BR-4368-01 19 38190221 38190221 G A ZNF607 Missense_Mutation p.H271Y 0.24 deleterious(0) probably_damaging(1) TCGA-BR-4368-01 19 38579399 38579399 C T SIPA1L3 Missense_Mutation p.P525S 0.24 deleterious(0) probably_damaging(0.978) TCGA-BR-4368-01 19 38876201 38876201 G A GGN Silent p.S567S 0.19 TCGA-BR-4368-01 19 40225698 40225698 C T CLC Missense_Mutation p.A11T 0.27 tolerated(0.39) benign(0.01) TCGA-BR-4368-01 19 40316612 40316612 G - DYRK1B Frame_Shift_Del p.Q545Sfs*19 0.10 TCGA-BR-4368-01 19 40480659 40480659 C A PSMC4 Silent p.P199P 0.19 TCGA-BR-4368-01 19 40978686 40978686 A G SPTBN4 Missense_Mutation p.K53R 0.19 tolerated(0.08) benign(0.135) TCGA-BR-4368-01 19 41060057 41060057 T C SPTBN4 Missense_Mutation p.L1560P 0.17 deleterious(0) probably_damaging(0.997) TCGA-BR-4368-01 19 41778132 41778132 G T HNRNPUL1 Missense_Mutation p.E188D 0.18 tolerated(0.12) unknown(0) TCGA-BR-4368-01 19 42352907 42352907 G A DMRTC2 Silent p.S164S 0.27 TCGA-BR-4368-01 19 42482921 42482921 G A ATP1A3 Silent p.N502N 0.22 TCGA-BR-4368-01 19 42492106 42492106 G A ATP1A3 Silent p.D126D 0.21 TCGA-BR-4368-01 19 4283236 4283236 G A SHD Missense_Mutation p.A197T 0.24 deleterious(0.01) possibly_damaging(0.806) TCGA-BR-4368-01 19 42847703 42847703 G - MEGF8 Frame_Shift_Del p.Y532Tfs*9 0.30 TCGA-BR-4368-01 19 43259305 43259305 G A PSG8 Silent p.L275L 0.21 TCGA-BR-4368-01 19 44778628 44778629 AT - ZNF233 Frame_Shift_Del p.Y606Sfs*15 0.18 TCGA-BR-4368-01 19 46281042 46281042 G A DMPK Silent p.Y265Y 0.22 TCGA-BR-4368-01 19 46332457 46332457 T C SYMPK Missense_Mutation p.I586V 0.14 tolerated(1) benign(0) TCGA-BR-4368-01 19 46915402 46915402 G A CCDC8 Silent p.G222G 0.21 TCGA-BR-4368-01 19 47422590 47422590 A - ARHGAP35 Frame_Shift_Del p.K221Rfs*14 0.14 TCGA-BR-4368-01 19 47775010 47775010 G A CCDC9 3'UTR 0.22 TCGA-BR-4368-01 19 4816902 4816902 C T TICAM1 Silent p.P496P 0.23 TCGA-BR-4368-01 19 48866695 48866695 C G TMEM143 Silent p.G39G 0.22 TCGA-BR-4368-01 19 48965204 48965204 A C KCNJ14 Missense_Mutation p.S75R 0.32 tolerated(0.06) possibly_damaging(0.892) TCGA-BR-4368-01 19 49136614 49136614 C T DBP Intron 0.21 TCGA-BR-4368-01 19 49377689 49377689 A G PPP1R15A Missense_Mutation p.E400G 0.24 deleterious(0) benign(0.001) TCGA-BR-4368-01 19 49573562 49573562 G C KCNA7 Missense_Mutation p.L377V 0.06 deleterious(0.05) probably_damaging(0.985) TCGA-BR-4368-01 19 49575520 49575520 T G KCNA7 Missense_Mutation p.E108A 0.38 deleterious(0.04) benign(0.028) TCGA-BR-4368-01 19 50148366 50148366 C T SCAF1 Missense_Mutation p.T28M 0.22 unknown(0) TCGA-BR-4368-01 19 50302683 50302683 G A AP2A1 Silent p.T355T 0.27 TCGA-BR-4368-01 19 50473353 50473353 G A SIGLEC16 RNA 0.32 TCGA-BR-4368-01 19 5047503 5047503 A G KDM4B Missense_Mutation p.N150S 0.18 possibly_damaging(0.726) TCGA-BR-4368-01 19 50957531 50957532 - C MYBPC2 Frame_Shift_Ins p.E643Gfs*49 0.27 TCGA-BR-4368-01 19 5238970 5238970 G A PTPRS Silent p.G603G 0.22 TCGA-BR-4368-01 19 52403509 52403509 T C ZNF649 5'UTR 0.32 TCGA-BR-4368-01 19 52538109 52538109 G A ZNF432 Missense_Mutation p.R275C 0.22 deleterious(0.03) possibly_damaging(0.88) TCGA-BR-4368-01 19 54314259 54314259 C T NLRP12 Silent p.A218A 0.24 TCGA-BR-4368-01 19 54650334 54650334 C T CNOT3 Intron 0.23 TCGA-BR-4368-01 19 55143507 55143509 AGA - LILRB1 In_Frame_Del p.E161del 0.24 TCGA-BR-4368-01 19 55593853 55593853 C T EPS8L1 Missense_Mutation p.A366V 0.25 deleterious(0) possibly_damaging(0.847) TCGA-BR-4368-01 19 55995118 55995118 C T ZNF628 Missense_Mutation p.T853M 0.20 deleterious(0.01) unknown(0) TCGA-BR-4368-01 19 56379209 56379209 T C NLRP4 Missense_Mutation p.L774P 0.23 deleterious(0) probably_damaging(0.996) TCGA-BR-4368-01 19 57065621 57065621 A T ZFP28 Silent p.T489T 0.18 TCGA-BR-4368-01 19 5711821 5711821 G A LONP1 Silent p.N277N 0.22 TCGA-BR-4368-01 19 57133351 57133351 C T ZNF71 Silent p.H232H 0.24 TCGA-BR-4368-01 19 57176021 57176021 C T ZNF835 Silent p.A182A 0.21 TCGA-BR-4368-01 19 57647457 57647457 T - ZIM3 Frame_Shift_Del p.N83Mfs*14 0.15 TCGA-BR-4368-01 19 57746748 57746748 G A AURKC Missense_Mutation p.R298Q 0.18 tolerated(0.22) benign(0.014) TCGA-BR-4368-01 19 5786792 5786792 C A DUS3L Missense_Mutation p.C485F 0.19 deleterious(0) probably_damaging(0.993) TCGA-BR-4368-01 19 57967320 57967320 G - VN1R1 Frame_Shift_Del p.H179Mfs*3 0.22 TCGA-BR-4368-01 19 57987127 57987127 C T AC004076.9 Missense_Mutation p.V34M 0.16 deleterious(0) probably_damaging(0.964) TCGA-BR-4368-01 19 58131878 58131878 C T ZNF134 Missense_Mutation p.P131S 0.21 tolerated(0.13) benign(0.005) TCGA-BR-4368-01 19 58213887 58213887 C T ZNF154 Missense_Mutation p.G144S 0.21 tolerated(0.45) benign(0) TCGA-BR-4368-01 19 58320008 58320008 T C ZNF552 Silent p.G208G 0.23 TCGA-BR-4368-01 19 58438151 58438151 C T ZNF418 Silent p.K466K 0.03 TCGA-BR-4368-01 19 59025430 59025430 A C ZBTB45 Silent p.P509P 0.23 TCGA-BR-4368-01 19 6002844 6002844 C T RFX2 Missense_Mutation p.R513H 0.14 deleterious(0.03) probably_damaging(0.978) TCGA-BR-4368-01 19 6040186 6040186 G A RFX2 Silent p.F109F 0.22 TCGA-BR-4368-01 19 6825086 6825086 G A VAV1 Missense_Mutation p.R226Q 0.20 tolerated(0.66) possibly_damaging(0.672) TCGA-BR-4368-01 19 6924823 6924823 C T EMR1 Silent p.C642C 0.12 TCGA-BR-4368-01 19 6935074 6935074 C T EMR1 Missense_Mutation p.T789M 0.19 deleterious(0.01) possibly_damaging(0.805) TCGA-BR-4368-01 19 6937643 6937643 C A EMR1 Missense_Mutation p.P880Q 0.20 tolerated(0.06) benign(0.104) TCGA-BR-4368-01 19 726187 726187 G A PALM Missense_Mutation p.A19T 0.18 deleterious(0.03) benign(0.327) TCGA-BR-4368-01 19 7584517 7584517 C - ZNF358 Frame_Shift_Del p.Q132Rfs*35 0.25 TCGA-BR-4368-01 19 7625616 7625616 G A PNPLA6 Missense_Mutation p.R1271Q 0.22 tolerated(0.93) benign(0.027) TCGA-BR-4368-01 19 7812255 7812255 A G CD209 Intron 0.14 TCGA-BR-4368-01 19 7975347 7975347 C T MAP2K7 Missense_Mutation p.R153C 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-BR-4368-01 19 8431200 8431200 C T ANGPTL4 Missense_Mutation p.H182Y 0.20 tolerated(0.08) benign(0.002) TCGA-BR-4368-01 19 9067398 9067398 G A MUC16 Missense_Mutation p.T6683I 0.23 unknown(0) TCGA-BR-4368-01 19 9068980 9068980 C T MUC16 Missense_Mutation p.A6156T 0.24 unknown(0) TCGA-BR-4368-01 19 9271917 9271917 C T ZNF317 Silent p.C532C 0.21 TCGA-BR-4368-01 19 9640164 9640164 A G ZNF426 Missense_Mutation p.L186P 0.23 tolerated(0.15) probably_damaging(0.909) TCGA-BR-4368-01 19 9960193 9960193 C - PIN1 3'UTR 0.29 TCGA-BR-4368-01 1 100336320 100336320 C T AGL Nonsense_Mutation p.R285* 0.13 TCGA-BR-4368-01 1 100568561 100568561 G T SASS6 Missense_Mutation p.P542T 0.21 deleterious(0.02) benign(0.018) TCGA-BR-4368-01 1 101186087 101186087 T C VCAM1 Silent p.G40G 0.25 TCGA-BR-4368-01 1 109777940 109777940 C T SARS Missense_Mutation p.R286W 0.18 deleterious(0.01) benign(0.009) TCGA-BR-4368-01 1 109806835 109806835 G A CELSR2 Missense_Mutation p.G1713S 0.14 tolerated(0.21) benign(0.046) TCGA-BR-4368-01 1 109824371 109824371 G A PSRC1 Missense_Mutation p.T130I 0.17 deleterious(0) probably_damaging(0.977) TCGA-BR-4368-01 1 110883026 110883026 C T RBM15 Silent p.Y333Y 0.12 TCGA-BR-4368-01 1 111730237 111730238 - T DENND2D Frame_Shift_Ins p.T469Nfs*13 0.23 TCGA-BR-4368-01 1 112246040 112246040 C T RAP1A Missense_Mutation p.T89M 0.20 deleterious(0) probably_damaging(0.921) TCGA-BR-4368-01 1 112269401 112269401 C T FAM212B 3'UTR 0.29 TCGA-BR-4368-01 1 11589888 11589888 G A PTCHD2 Missense_Mutation p.V992M 0.15 tolerated(0.25) benign(0.005) TCGA-BR-4368-01 1 116380938 116380938 G A NHLH2 Missense_Mutation p.S19L 0.15 deleterious_low_confidence(0) possibly_damaging(0.602) TCGA-BR-4368-01 1 1190730 1190730 C A UBE2J2 Silent p.G227G 0.21 TCGA-BR-4368-01 1 119575803 119575803 C T WARS2 Missense_Mutation p.V272M 0.26 deleterious(0) probably_damaging(0.998) TCGA-BR-4368-01 1 120436658 120436658 G A ADAM30 Nonsense_Mutation p.Q768* 0.18 TCGA-BR-4368-01 1 120462980 120462980 A T NOTCH2 Missense_Mutation p.I1784N 0.22 tolerated(0.16) possibly_damaging(0.583) TCGA-BR-4368-01 1 12061540 12061540 G A MFN2 Missense_Mutation p.R300H 0.23 deleterious(0.03) possibly_damaging(0.781) TCGA-BR-4368-01 1 14106911 14106911 C T PRDM2 Missense_Mutation p.T874M 0.25 probably_damaging(0.951) TCGA-BR-4368-01 1 144904690 144904690 A G PDE4DIP Silent p.N874N 0.04 TCGA-BR-4368-01 1 144922006 144922006 C T PDE4DIP Silent p.L341L 0.12 TCGA-BR-4368-01 1 145281505 145281505 T C NOTCH2NL Silent p.N145N 0.03 TCGA-BR-4368-01 1 145416569 145416569 C T HFE2 Missense_Mutation p.A305V 0.07 tolerated(0.54) possibly_damaging(0.487) TCGA-BR-4368-01 1 145473759 145473759 T C ANKRD34A Missense_Mutation p.I144T 0.09 deleterious(0) probably_damaging(0.981) TCGA-BR-4368-01 1 145562723 145562723 G A ANKRD35 Missense_Mutation p.S804N 0.23 tolerated(0.21) probably_damaging(0.979) TCGA-BR-4368-01 1 147092681 147092681 C - BCL9 Frame_Shift_Del p.P909Lfs*57 0.31 TCGA-BR-4368-01 1 147231341 147231341 G A GJA5 Silent p.G2G 0.15 TCGA-BR-4368-01 1 149905749 149905749 G A MTMR11 Missense_Mutation p.P257L 0.18 deleterious(0) probably_damaging(0.995) TCGA-BR-4368-01 1 149939441 149939441 G A OTUD7B Missense_Mutation p.R94C 0.23 deleterious(0) probably_damaging(0.998) TCGA-BR-4368-01 1 150199124 150199124 C T ANP32E Missense_Mutation p.G166D 0.16 tolerated(0.25) unknown(0) TCGA-BR-4368-01 1 150337344 150337344 A - RPRD2 Frame_Shift_Del p.K53Nfs*11 0.20 TCGA-BR-4368-01 1 150476841 150476841 C T TARS2 Missense_Mutation p.R550W 0.14 deleterious(0) probably_damaging(0.998) TCGA-BR-4368-01 1 150479415 150479415 A G TARS2 Missense_Mutation p.K678E 0.25 tolerated(0.29) benign(0.005) TCGA-BR-4368-01 1 151259629 151259631 GAT - ZNF687 In_Frame_Del p.D290del 0.16 TCGA-BR-4368-01 1 151774033 151774033 G - LINGO4 Frame_Shift_Del p.P383Lfs*14 0.36 TCGA-BR-4368-01 1 152081942 152081942 G A TCHH Missense_Mutation p.R1251W 0.22 unknown(0) TCGA-BR-4368-01 1 152329498 152329498 T C FLG2 Missense_Mutation p.Q255R 0.22 unknown(0) TCGA-BR-4368-01 1 152748934 152748934 C - LCE1F Frame_Shift_Del p.P31Qfs*47 0.20 TCGA-BR-4368-01 1 153912194 153912194 G A DENND4B Missense_Mutation p.R564C 0.16 deleterious(0) probably_damaging(0.982) TCGA-BR-4368-01 1 153932959 153932959 G A SLC39A1 Missense_Mutation p.A197V 0.18 deleterious(0) probably_damaging(0.988) TCGA-BR-4368-01 1 155264954 155264954 C T PKLR Missense_Mutation p.R216H 0.25 tolerated(0.57) benign(0.003) TCGA-BR-4368-01 1 155927507 155927507 C T ARHGEF2 Missense_Mutation p.R571H 0.18 tolerated(0.28) possibly_damaging(0.736) TCGA-BR-4368-01 1 156621478 156621478 C A BCAN Missense_Mutation p.L432I 0.27 tolerated(0.27) possibly_damaging(0.585) TCGA-BR-4368-01 1 156670692 156670692 G A CRABP2 Nonsense_Mutation p.Q75* 0.29 TCGA-BR-4368-01 1 156693132 156693132 C T ISG20L2 3'UTR 0.21 TCGA-BR-4368-01 1 156770304 156770304 C - PRCC 3'UTR 0.24 TCGA-BR-4368-01 1 156779494 156779494 C T SH2D2A Missense_Mutation p.A235T 0.23 tolerated(0.34) benign(0.02) TCGA-BR-4368-01 1 156905647 156905647 C - ARHGEF11 3'UTR 0.33 TCGA-BR-4368-01 1 158736446 158736446 T C OR6N1 Silent p.V9V 0.16 TCGA-BR-4368-01 1 16261327 16261327 G A SPEN Silent p.S2864S 0.16 TCGA-BR-4368-01 1 16380242 16380242 C T CLCNKB Silent p.A577A 0.15 TCGA-BR-4368-01 1 165513785 165513785 T A LRRC52 Nonsense_Mutation p.C84* 0.24 TCGA-BR-4368-01 1 16621245 16621245 T C FBXO42 Intron 0.17 TCGA-BR-4368-01 1 16774560 16774560 C T NECAP2 Missense_Mutation p.R102W 0.25 tolerated(0.09) benign(0.052) TCGA-BR-4368-01 1 168282167 168282167 C T TBX19 Missense_Mutation p.A425V 0.14 deleterious_low_confidence(0.04) benign(0.086) TCGA-BR-4368-01 1 169076060 169076060 C T ATP1B1 5'UTR 0.22 TCGA-BR-4368-01 1 169292503 169292503 G A NME7 Missense_Mutation p.R44C 0.13 deleterious(0.02) possibly_damaging(0.53) TCGA-BR-4368-01 1 169347718 169347718 C T BLZF1 Missense_Mutation p.R207C 0.16 deleterious(0) probably_damaging(0.993) TCGA-BR-4368-01 1 170511699 170511699 A - GORAB Frame_Shift_Del p.A190Lfs*19 0.20 TCGA-BR-4368-01 1 170705416 170705416 A G PRRX1 3'UTR 0.17 TCGA-BR-4368-01 1 171511137 171511137 G A PRRC2C Missense_Mutation p.R1509Q 0.21 unknown(0) TCGA-BR-4368-01 1 182026465 182026465 C T ZNF648 Silent p.A227A 0.27 TCGA-BR-4368-01 1 182369414 182369414 C A TEDDM1 Missense_Mutation p.W69C 0.28 deleterious(0) probably_damaging(0.999) TCGA-BR-4368-01 1 182569617 182569617 G A RGS16 Missense_Mutation p.T140M 0.18 deleterious(0) probably_damaging(1) TCGA-BR-4368-01 1 182798102 182798102 T - NPL 3'UTR 0.21 TCGA-BR-4368-01 1 183933050 183933050 G A COLGALT2 Nonsense_Mutation p.Q313* 0.13 TCGA-BR-4368-01 1 184764680 184764680 C T FAM129A Missense_Mutation p.V740I 0.23 tolerated_low_confidence(0.43) benign(0.003) TCGA-BR-4368-01 1 185958730 185958730 C G HMCN1 Silent p.A1053A 0.30 TCGA-BR-4368-01 1 185966629 185966629 C T HMCN1 Missense_Mutation p.R1283C 0.18 probably_damaging(0.999) TCGA-BR-4368-01 1 186106003 186106003 G T HMCN1 Nonsense_Mutation p.E4506* 0.21 TCGA-BR-4368-01 1 186276379 186276379 A G PRG4 Missense_Mutation p.T510A 0.23 unknown(0) TCGA-BR-4368-01 1 186292897 186292897 G A TPR Missense_Mutation p.S2073L 0.07 benign(0.033) TCGA-BR-4368-01 1 197404527 197404527 C T CRB1 Silent p.I1178I 0.16 TCGA-BR-4368-01 1 202464774 202464774 A G PPP1R12B Silent p.R804R 0.07 TCGA-BR-4368-01 1 202934510 202934510 T C CYB5R1 Missense_Mutation p.Y155C 0.21 deleterious(0) probably_damaging(1) TCGA-BR-4368-01 1 202990020 202990020 G A TMEM183A Missense_Mutation p.V297I 0.22 tolerated(0.35) benign(0.088) TCGA-BR-4368-01 1 203033065 203033065 G A PPFIA4 Missense_Mutation p.R489H 0.29 deleterious(0) probably_damaging(0.99) TCGA-BR-4368-01 1 204234077 204234077 G A PLEKHA6 Missense_Mutation p.T125M 0.19 deleterious(0) probably_damaging(0.957) TCGA-BR-4368-01 1 205053328 205053329 - C TMEM81 Frame_Shift_Ins p.K41Efs*18 0.23 TCGA-BR-4368-01 1 205500575 205500575 C T CDK18 3'UTR 0.23 TCGA-BR-4368-01 1 206773636 206773637 - TTATGTCC EIF2D Nonsense_Mutation p.K310Rfs*3 0.11 TCGA-BR-4368-01 1 209807865 209807865 C T LAMB3 Missense_Mutation p.R164Q 0.16 tolerated(0.85) benign(0.003) TCGA-BR-4368-01 1 2103590 2103590 G A PRKCZ Silent p.A386A 0.25 TCGA-BR-4368-01 1 211307209 211307209 C T KCNH1 Missense_Mutation p.D27N 0.16 tolerated(0.15) benign(0.013) TCGA-BR-4368-01 1 211307374 211307374 C T KCNH1 5'Flank 0.27 TCGA-BR-4368-01 1 214170906 214170906 C T PROX1 Missense_Mutation p.P343L 0.14 tolerated(0.3) benign(0.089) TCGA-BR-4368-01 1 214818951 214818951 C T CENPF Missense_Mutation p.T2013M 0.17 benign(0.048) TCGA-BR-4368-01 1 215792267 215792267 C A KCTD3 Silent p.S534S 0.26 TCGA-BR-4368-01 1 218607536 218607536 A G TGFB2 Missense_Mutation p.H236R 0.23 tolerated(1) benign(0.039) TCGA-BR-4368-01 1 220162058 220162058 C T EPRS Silent p.S883S 0.24 TCGA-BR-4368-01 1 222802778 222802779 - A MIA3 Frame_Shift_Ins p.R741Tfs*3 0.18 TCGA-BR-4368-01 1 222923406 222923406 C T FAM177B 3'UTR 0.10 TCGA-BR-4368-01 1 226040398 226040398 A G TMEM63A Missense_Mutation p.Y624H 0.10 deleterious(0) probably_damaging(0.981) TCGA-BR-4368-01 1 228285717 228285717 G A ARF1 3'UTR 0.11 TCGA-BR-4368-01 1 228294490 228294490 G A MRPL55 Nonsense_Mutation p.R156* 0.19 TCGA-BR-4368-01 1 228529196 228529196 G T OBSCN Missense_Mutation p.W6929L 0.19 probably_damaging(0.999) TCGA-BR-4368-01 1 228547796 228547796 C T OBSCN Intron 0.21 TCGA-BR-4368-01 1 228582822 228582822 C T TRIM11 Missense_Mutation p.V331M 0.29 deleterious(0.03) probably_damaging(0.96) TCGA-BR-4368-01 1 228879181 228879181 C T RHOU Silent p.I157I 0.24 TCGA-BR-4368-01 1 230820911 230820911 C T COG2 Missense_Mutation p.P437S 0.04 tolerated(0.2) benign(0.036) TCGA-BR-4368-01 1 230928178 230928178 G A CAPN9 Missense_Mutation p.G577S 0.17 deleterious(0.01) benign(0.101) TCGA-BR-4368-01 1 231503356 231503356 T C EGLN1 Missense_Mutation p.D392G 0.17 deleterious(0) probably_damaging(1) TCGA-BR-4368-01 1 234541716 234541716 C A TARBP1 Nonsense_Mutation p.E1308* 0.18 TCGA-BR-4368-01 1 235294961 235294961 C A RBM34 3'UTR 0.22 TCGA-BR-4368-01 1 23640194 23640194 A G HNRNPR Missense_Mutation p.V343A 0.20 deleterious(0.02) possibly_damaging(0.825) TCGA-BR-4368-01 1 236907942 236907942 G T ACTN2 Missense_Mutation p.L424F 0.21 deleterious(0) probably_damaging(1) TCGA-BR-4368-01 1 237664023 237664023 G A RYR2 Missense_Mutation p.R739H 0.18 possibly_damaging(0.528) TCGA-BR-4368-01 1 240072444 240072445 AA - CHRM3 Frame_Shift_Del p.K567Efs*26 0.27 TCGA-BR-4368-01 1 241757740 241757740 C T OPN3 Missense_Mutation p.R400H 0.19 tolerated(0.1) benign(0.048) TCGA-BR-4368-01 1 241797190 241797190 C T CHML Missense_Mutation p.A627T 0.22 tolerated(0.53) benign(0.002) TCGA-BR-4368-01 1 243433519 243433519 C T SDCCAG8 Silent p.D60D 0.28 TCGA-BR-4368-01 1 24447935 24447935 G - IL22RA1 Frame_Shift_Del p.P362Hfs*7 0.25 TCGA-BR-4368-01 1 244769065 244769065 A T C1orf101 Missense_Mutation p.D791V 0.11 deleterious(0.04) benign(0.211) TCGA-BR-4368-01 1 24664148 24664149 - C GRHL3 Frame_Shift_Ins p.K239Qfs*52 0.24 TCGA-BR-4368-01 1 247048893 247048893 G A AHCTF1 Silent p.G863G 0.25 TCGA-BR-4368-01 1 248129152 248129152 A G OR2AK2 Missense_Mutation p.I173M 0.08 tolerated(0.14) benign(0.06) TCGA-BR-4368-01 1 26508408 26508408 G T CNKSR1 Missense_Mutation p.E151D 0.19 tolerated(0.36) benign(0.124) TCGA-BR-4368-01 1 27057708 27057709 - A ARID1A Frame_Shift_Ins p.Q473Tfs*150 0.24 TCGA-BR-4368-01 1 29342251 29342251 C T EPB41 Missense_Mutation p.P293S 0.20 deleterious(0) probably_damaging(1) TCGA-BR-4368-01 1 2938800 2938800 G A ACTRT2 Missense_Mutation p.V184M 0.20 tolerated(0.08) benign(0.378) TCGA-BR-4368-01 1 32096261 32096261 G A PEF1 Missense_Mutation p.L270F 0.15 deleterious(0.04) probably_damaging(0.955) TCGA-BR-4368-01 1 32164183 32164183 C T COL16A1 Silent p.P97P 0.22 TCGA-BR-4368-01 1 32205538 32205538 G A BAI2 Missense_Mutation p.T719I 0.17 deleterious(0) probably_damaging(0.996) TCGA-BR-4368-01 1 3319548 3319548 C T PRDM16 Silent p.F290F 0.17 TCGA-BR-4368-01 1 35223698 35223699 - TCC GJB5 In_Frame_Ins p.P258dup 0.24 TCGA-BR-4368-01 1 3547479 3547479 T - WRAP73 3'UTR 0.21 TCGA-BR-4368-01 1 35836080 35836080 A - ZMYM4 Frame_Shift_Del p.I347Sfs*51 0.17 TCGA-BR-4368-01 1 36030950 36030950 T C NCDN Missense_Mutation p.Y626H 0.05 deleterious(0) probably_damaging(0.999) TCGA-BR-4368-01 1 36636626 36636626 C - MAP7D1 Frame_Shift_Del p.P36Hfs*20 0.34 TCGA-BR-4368-01 1 37961520 37961520 C T MEAF6 Splice_Site p.X188_splice 0.21 TCGA-BR-4368-01 1 38059433 38059433 C T GNL2 Missense_Mutation p.A27T 0.19 tolerated(0.3) benign(0.064) TCGA-BR-4368-01 1 38354008 38354008 G A INPP5B Missense_Mutation p.A269V 0.25 tolerated(1) benign(0) TCGA-BR-4368-01 1 38484942 38484942 G A UTP11L Missense_Mutation p.A152T 0.21 deleterious(0) probably_damaging(0.969) TCGA-BR-4368-01 1 38489303 38489303 T C UTP11L 3'UTR 0.21 TCGA-BR-4368-01 1 40872413 40872413 C T SMAP2 Nonsense_Mutation p.R37* 0.24 TCGA-BR-4368-01 1 42693608 42693608 C T FOXJ3 Silent p.P158P 0.23 TCGA-BR-4368-01 1 43396302 43396302 C T SLC2A1 Missense_Mutation p.A171T 0.20 deleterious(0) probably_damaging(1) TCGA-BR-4368-01 1 43779013 43779013 C T TIE1 Missense_Mutation p.T712M 0.15 deleterious(0.01) probably_damaging(0.995) TCGA-BR-4368-01 1 44476464 44476464 C T SLC6A9 Missense_Mutation p.V114M 0.22 deleterious(0) probably_damaging(1) TCGA-BR-4368-01 1 45407285 45407285 T G EIF2B3 Missense_Mutation p.E116A 0.19 deleterious(0.03) benign(0.156) TCGA-BR-4368-01 1 45473964 45473964 T C HECTD3 Missense_Mutation p.H423R 0.10 tolerated(0.36) benign(0.074) TCGA-BR-4368-01 1 47283696 47283696 C T CYP4B1 Missense_Mutation p.P423S 0.26 deleterious(0) benign(0.201) TCGA-BR-4368-01 1 53547667 53547667 C T PODN Missense_Mutation p.A607V 0.17 tolerated(0.37) possibly_damaging(0.879) TCGA-BR-4368-01 1 53580635 53580635 C T SLC1A7 Missense_Mutation p.G76R 0.18 deleterious(0) probably_damaging(1) TCGA-BR-4368-01 1 53727864 53727864 C T LRP8 Missense_Mutation p.R597H 0.18 deleterious(0) probably_damaging(1) TCGA-BR-4368-01 1 54683989 54683989 G A MRPL37 3'UTR 0.21 TCGA-BR-4368-01 1 55457572 55457572 G C TMEM61 Silent p.G143G 0.22 TCGA-BR-4368-01 1 55472853 55472853 C T BSND Silent p.G152G 0.13 TCGA-BR-4368-01 1 5923298 5923298 C T NPHP4 3'UTR 0.12 TCGA-BR-4368-01 1 5933359 5933359 C T NPHP4 Missense_Mutation p.A1090T 0.22 tolerated(0.37) benign(0.019) TCGA-BR-4368-01 1 64059334 64059334 G A PGM1 Missense_Mutation p.V59M 0.33 deleterious(0) possibly_damaging(0.864) TCGA-BR-4368-01 1 6579647 6579647 C T NOL9 3'Flank 0.24 TCGA-BR-4368-01 1 67147821 67147821 G T SGIP1 Missense_Mutation p.G362W 0.23 deleterious_low_confidence(0.01) probably_damaging(0.965) TCGA-BR-4368-01 1 68171151 68171151 T - GNG12 Frame_Shift_Del p.T68Lfs*22 0.15 TCGA-BR-4368-01 1 68512991 68512991 C T DIRAS3 5'UTR 0.16 TCGA-BR-4368-01 1 75622692 75622692 G C LHX8 Missense_Mutation p.E309Q 0.04 tolerated(0.09) possibly_damaging(0.477) TCGA-BR-4368-01 1 78162897 78162897 A - USP33 3'UTR 0.22 TCGA-BR-4368-01 1 78187594 78187594 C T USP33 Missense_Mutation p.V558I 0.20 tolerated_low_confidence(1) benign(0.018) TCGA-BR-4368-01 1 78205025 78205026 - A USP33 Frame_Shift_Ins p.L123Ffs*3 0.24 TCGA-BR-4368-01 1 7839806 7839806 T A VAMP3 3'UTR 0.18 TCGA-BR-4368-01 1 85279838 85279838 G A LPAR3 Silent p.C251C 0.19 TCGA-BR-4368-01 1 86826142 86826142 T - ODF2L Frame_Shift_Del p.K407Nfs*22 0.26 TCGA-BR-4368-01 1 89733134 89733134 T C GBP5 Missense_Mutation p.N132D 0.22 deleterious(0.01) benign(0.284) TCGA-BR-4368-01 1 90178423 90178423 C T LRRC8C Silent p.G98G 0.15 TCGA-BR-4368-01 1 94343392 94343392 C T DNTTIP2 Silent p.A33A 0.20 TCGA-BR-4368-01 1 9795564 9795564 G A CLSTN1 Missense_Mutation p.T615M 0.19 deleterious(0) probably_damaging(0.999) TCGA-BR-4368-01 1 98058829 98058829 C T DPYD Missense_Mutation p.R358H 0.18 deleterious(0) probably_damaging(0.977) TCGA-BR-4368-01 1 9809959 9809959 T - CLSTN1 Frame_Shift_Del p.N221Tfs*5 0.27 TCGA-BR-4368-01 1 9833363 9833363 C T CLSTN1 Missense_Mutation p.A61T 0.20 deleterious(0) probably_damaging(0.999) TCGA-BR-4368-01 20 13839964 13839964 C T SEL1L2 Intron 0.39 TCGA-BR-4368-01 20 14308143 14308143 C T FLRT3 Missense_Mutation p.A4T 0.16 tolerated_low_confidence(0.56) benign(0) TCGA-BR-4368-01 20 24524024 24524024 C T SYNDIG1 Silent p.G97G 0.24 TCGA-BR-4368-01 20 2465000 2465000 T G ZNF343 Missense_Mutation p.S203R 0.17 tolerated(0.23) benign(0.064) TCGA-BR-4368-01 20 31023213 31023213 C T ASXL1 Missense_Mutation p.P900S 0.25 tolerated_low_confidence(0.12) benign(0.031) TCGA-BR-4368-01 20 31375119 31375119 C T DNMT3B Silent p.D172D 0.15 TCGA-BR-4368-01 20 31670741 31670741 C T BPIFB4 Intron 0.22 TCGA-BR-4368-01 20 31756984 31756984 C T BPIFA2 Silent p.C11C 0.20 TCGA-BR-4368-01 20 32328795 32328795 C T ZNF341 Missense_Mutation p.A40V 0.16 deleterious(0.02) benign(0.105) TCGA-BR-4368-01 20 32878577 32878577 G A AHCY Silent p.T242T 0.15 TCGA-BR-4368-01 20 33764628 33764628 C T PROCR 3'UTR 0.27 TCGA-BR-4368-01 20 35060160 35060160 G A DLGAP4 Missense_Mutation p.D14N 0.24 tolerated(0.09) possibly_damaging(0.711) TCGA-BR-4368-01 20 35240660 35240660 A G C20orf24 3'UTR 0.06 TCGA-BR-4368-01 20 35852284 35852284 A G RPN2 Missense_Mutation p.R366G 0.17 deleterious(0.01) benign(0.142) TCGA-BR-4368-01 20 36640052 36640052 G A TTI1 Silent p.L723L 0.16 TCGA-BR-4368-01 20 39831909 39831909 G A ZHX3 Missense_Mutation p.R550W 0.26 deleterious(0) probably_damaging(0.999) TCGA-BR-4368-01 20 398429 398429 G A RBCK1 Silent p.Q105Q 0.25 TCGA-BR-4368-01 20 409197 409197 C T RBCK1 Silent p.N424N 0.10 TCGA-BR-4368-01 20 41101110 41101110 G A PTPRT Missense_Mutation p.R416C 0.11 deleterious(0) probably_damaging(0.989) TCGA-BR-4368-01 20 43255112 43255112 G T ADA Missense_Mutation p.P116H 0.13 deleterious(0) probably_damaging(0.978) TCGA-BR-4368-01 20 44469907 44469908 - C SNX21 Frame_Shift_Ins p.S362Qfs*17 0.26 TCGA-BR-4368-01 20 44515248 44515248 C - SPATA25 Frame_Shift_Del p.A198Rfs*17 0.23 TCGA-BR-4368-01 20 44639209 44639209 G A MMP9 Silent p.P153P 0.19 TCGA-BR-4368-01 20 44869687 44869687 G A CDH22 Silent p.I155I 0.16 TCGA-BR-4368-01 20 45130930 45130930 C T ZNF334 Missense_Mutation p.E350K 0.25 tolerated(0.29) benign(0.029) TCGA-BR-4368-01 20 46290538 46290538 G - SULF2 Frame_Shift_Del p.R825Gfs*29 0.21 TCGA-BR-4368-01 20 47739699 47739699 T - STAU1 Frame_Shift_Del p.K299Rfs*22 0.30 TCGA-BR-4368-01 20 48503378 48503378 C T SLC9A8 Silent p.F543F 0.25 TCGA-BR-4368-01 20 49203727 49203727 A - FAM65C 3'UTR 0.23 TCGA-BR-4368-01 20 49509399 49509400 - T ADNP Frame_Shift_Ins p.D618Rfs*20 0.23 TCGA-BR-4368-01 20 49626608 49626608 C T KCNG1 Missense_Mutation p.G90S 0.08 tolerated(0.32) probably_damaging(1) TCGA-BR-4368-01 20 55012423 55012423 C - CASS4 Frame_Shift_Del p.P82Hfs*3 0.33 TCGA-BR-4368-01 20 55206380 55206380 G A TFAP2C Silent p.P56P 0.21 TCGA-BR-4368-01 20 57042206 57042206 G A APCDD1L Missense_Mutation p.H233Y 0.21 tolerated(0.28) benign(0.045) TCGA-BR-4368-01 20 60585189 60585189 C T TAF4 Silent p.T558T 0.15 TCGA-BR-4368-01 20 61291766 61291766 C T SLCO4A1 Missense_Mutation p.T297M 0.27 tolerated(0.11) possibly_damaging(0.719) TCGA-BR-4368-01 20 61528133 61528133 C T DIDO1 Missense_Mutation p.A602T 0.10 benign(0.004) TCGA-BR-4368-01 20 61944531 61944531 C T COL20A1 Silent p.Y713Y 0.19 TCGA-BR-4368-01 20 62331956 62331957 TG - ARFRP1 Frame_Shift_Del p.T172Rfs*143 0.24 TCGA-BR-4368-01 20 62365068 62365068 C T ZGPAT Missense_Mutation p.T283M 0.21 tolerated(0.1) benign(0.003) TCGA-BR-4368-01 20 62891516 62891516 G A PCMTD2 Silent p.P66P 0.21 TCGA-BR-4368-01 20 6759174 6759174 C - BMP2 Frame_Shift_Del p.A212Lfs*2 0.18 TCGA-BR-4368-01 21 15352124 15352124 C T ANKRD20A11P RNA 0.20 TCGA-BR-4368-01 21 18966420 18966420 T C BTG3 Silent p.A294A 0.07 TCGA-BR-4368-01 21 22906922 22906922 G T NCAM2 Nonsense_Mutation p.E783* 0.11 TCGA-BR-4368-01 21 22906925 22906925 G A NCAM2 Missense_Mutation p.D784N 0.11 tolerated(0.16) benign(0.321) TCGA-BR-4368-01 21 30380587 30380587 C T RWDD2B Silent p.P112P 0.21 TCGA-BR-4368-01 21 30701983 30701983 T C BACH1 Missense_Mutation p.I582T 0.13 deleterious(0) probably_damaging(0.998) TCGA-BR-4368-01 21 30909459 30909459 A G GRIK1 3'UTR 0.31 TCGA-BR-4368-01 21 32638992 32638992 T G TIAM1 Missense_Mutation p.R99S 0.16 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BR-4368-01 21 33063217 33063217 C A SCAF4 Missense_Mutation p.W593L 0.21 possibly_damaging(0.693) TCGA-BR-4368-01 21 34131467 34131467 C - PAXBP1 Frame_Shift_Del p.G436Vfs*29 0.18 TCGA-BR-4368-01 21 34697419 34697419 T C IFNAR1 Missense_Mutation p.V20A 0.26 tolerated(0.22) benign(0.003) TCGA-BR-4368-01 21 34713411 34713411 C T IFNAR1 Missense_Mutation p.R103C 0.19 deleterious(0) probably_damaging(0.999) TCGA-BR-4368-01 21 37571453 37571453 T A DOPEY2 Missense_Mutation p.L75Q 0.22 deleterious(0) probably_damaging(1) TCGA-BR-4368-01 21 39580610 39580610 A G DSCR10 RNA 0.21 TCGA-BR-4368-01 21 41725614 41725614 C T DSCAM Missense_Mutation p.A238T 0.23 tolerated(0.29) benign(0.271) TCGA-BR-4368-01 21 46686228 46686228 C T POFUT2 Intron 0.20 TCGA-BR-4368-01 21 46703350 46703350 G A POFUT2 Missense_Mutation p.R159W 0.24 deleterious(0) probably_damaging(0.986) TCGA-BR-4368-01 21 46896330 46896330 C T COL18A1 Silent p.G468G 0.18 TCGA-BR-4368-01 21 47549037 47549037 G A COL6A2 Intron 0.30 TCGA-BR-4368-01 21 47746486 47746486 G T PCNT Missense_Mutation p.G84W 0.16 probably_damaging(0.979) TCGA-BR-4368-01 22 17073164 17073165 - T CCT8L2 Frame_Shift_Ins p.A93Sfs*9 0.27 TCGA-BR-4368-01 22 17119478 17119478 A T TPTEP1 RNA 0.19 TCGA-BR-4368-01 22 18305761 18305761 C T MICAL3 Missense_Mutation p.A1087T 0.24 benign(0.063) TCGA-BR-4368-01 22 18367052 18367052 G - MICAL3 Intron 0.33 TCGA-BR-4368-01 22 19319037 19319037 T C HIRA Missense_Mutation p.I994V 0.23 tolerated(0.1) benign(0.021) TCGA-BR-4368-01 22 19371200 19371200 C T HIRA Missense_Mutation p.R453Q 0.27 deleterious(0.01) possibly_damaging(0.908) TCGA-BR-4368-01 22 19868175 19868175 G A TXNRD2 Silent p.G384G 0.22 TCGA-BR-4368-01 22 21799992 21799992 G A HIC2 Missense_Mutation p.A270T 0.22 tolerated(0.6) benign(0) TCGA-BR-4368-01 22 22677194 22677194 A G IGLV1-51 Silent p.R74R 0.24 TCGA-BR-4368-01 22 24086656 24086656 G A ZNF70 Silent p.Y224Y 0.14 TCGA-BR-4368-01 22 24726351 24726351 A - SPECC1L Frame_Shift_Del p.N785Mfs*11 0.22 TCGA-BR-4368-01 22 26114215 26114215 A G ADRBK2 Missense_Mutation p.Y553C 0.04 tolerated_low_confidence(0.14) possibly_damaging(0.8) TCGA-BR-4368-01 22 26117303 26117303 A T ADRBK2 Missense_Mutation p.K615I 0.12 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-BR-4368-01 22 26888055 26888055 C T TFIP11 Missense_Mutation p.R813Q 0.20 tolerated(0.09) benign(0.16) TCGA-BR-4368-01 22 26997907 26997907 C T CRYBB1 Missense_Mutation p.A171T 0.33 deleterious(0) benign(0.088) TCGA-BR-4368-01 22 29654828 29654828 G A EMID1 Silent p.A409A 0.13 TCGA-BR-4368-01 22 30888481 30888481 C A SEC14L4 Missense_Mutation p.R215M 0.13 deleterious(0) probably_damaging(0.933) TCGA-BR-4368-01 22 31487265 31487265 G T SMTN Missense_Mutation p.R419L 0.29 deleterious(0.01) possibly_damaging(0.646) TCGA-BR-4368-01 22 31971347 31971347 C A SFI1 Silent p.A351A 0.15 TCGA-BR-4368-01 22 32924871 32924872 - G SYN3 Frame_Shift_Ins p.L407Pfs*9 0.23 TCGA-BR-4368-01 22 36537739 36537739 C T APOL3 Missense_Mutation p.V240M 0.24 deleterious(0.03) probably_damaging(0.979) TCGA-BR-4368-01 22 37387547 37387547 C T TEX33 Nonsense_Mutation p.W240* 0.15 TCGA-BR-4368-01 22 38363644 38363644 C T POLR2F Silent p.I102I 0.27 TCGA-BR-4368-01 22 42390761 42390761 C T SEPT3 Intron 0.20 TCGA-BR-4368-01 22 42524899 42524899 C T CYP2D6 Missense_Mutation p.V185M 0.25 deleterious(0.05) probably_damaging(0.986) TCGA-BR-4368-01 22 43557100 43557101 AG - TSPO Frame_Shift_Del p.K77Gfs*120 0.23 TCGA-BR-4368-01 22 43870822 43870822 C T MPPED1 Missense_Mutation p.R205W 0.29 deleterious(0) probably_damaging(0.979) TCGA-BR-4368-01 22 45755790 45755790 C T SMC1B Silent p.L919L 0.18 TCGA-BR-4368-01 22 45809346 45809346 C T SMC1B Missense_Mutation p.G35S 0.24 deleterious(0) possibly_damaging(0.9) TCGA-BR-4368-01 22 45996231 45996231 G A FBLN1 Missense_Mutation p.V673I 0.21 tolerated(0.44) benign(0) TCGA-BR-4368-01 22 45996292 45996292 A G FBLN1 Missense_Mutation p.N693S 0.04 tolerated(0.16) possibly_damaging(0.636) TCGA-BR-4368-01 22 50356388 50356388 G A PIM3 Missense_Mutation p.G223E 0.05 deleterious(0) probably_damaging(1) TCGA-BR-4368-01 22 50615790 50615790 C T PANX2 Missense_Mutation p.R217C 0.30 deleterious(0) probably_damaging(0.999) TCGA-BR-4368-01 22 50694077 50694077 C T MAPK12 Silent p.P246P 0.17 TCGA-BR-4368-01 22 50987980 50987980 G A KLHDC7B Missense_Mutation p.R462H 0.23 deleterious(0) probably_damaging(0.999) TCGA-BR-4368-01 2 102805670 102805670 G A IL1RL2 Missense_Mutation p.V65M 0.28 deleterious(0.01) possibly_damaging(0.793) TCGA-BR-4368-01 2 106497989 106497989 C G NCK2 Missense_Mutation p.C144W 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-BR-4368-01 2 107446579 107446579 T C ST6GAL2 Missense_Mutation p.I421V 0.20 possibly_damaging(0.823) TCGA-BR-4368-01 2 109524475 109524475 G A EDAR Silent p.S268S 0.30 TCGA-BR-4368-01 2 113950132 113950132 C T PSD4 Missense_Mutation p.R602W 0.22 deleterious(0) probably_damaging(0.985) TCGA-BR-4368-01 2 11736258 11736258 T C GREB1 Missense_Mutation p.L616P 0.22 deleterious(0) probably_damaging(0.999) TCGA-BR-4368-01 2 118583858 118583858 G A DDX18 Missense_Mutation p.R512H 0.19 deleterious(0.01) probably_damaging(0.986) TCGA-BR-4368-01 2 120005432 120005432 G A STEAP3 Missense_Mutation p.V234I 0.16 tolerated(0.86) benign(0.003) TCGA-BR-4368-01 2 120677773 120677773 T - PTPN4 Frame_Shift_Del p.F321Lfs*7 0.18 TCGA-BR-4368-01 2 121744020 121744020 C T GLI2 Missense_Mutation p.A708V 0.17 tolerated(0.57) possibly_damaging(0.501) TCGA-BR-4368-01 2 128700069 128700069 G A SAP130 Nonsense_Mutation p.Q1008* 0.16 TCGA-BR-4368-01 2 128865513 128865513 T C UGGT1 Silent p.G93G 0.19 TCGA-BR-4368-01 2 130897852 130897852 G - CCDC74B Frame_Shift_Del p.P259Qfs*2 0.38 TCGA-BR-4368-01 2 133543248 133543248 G A NCKAP5 Missense_Mutation p.S379L 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-BR-4368-01 2 135102526 135102526 C T MGAT5 Nonsense_Mutation p.R335* 0.16 TCGA-BR-4368-01 2 136561685 136561685 T C LCT Missense_Mutation p.H1493R 0.12 deleterious(0) probably_damaging(1) TCGA-BR-4368-01 2 136566693 136566693 C T LCT Missense_Mutation p.G1075D 0.17 deleterious(0.04) possibly_damaging(0.753) TCGA-BR-4368-01 2 148683686 148683686 A - ACVR2A Frame_Shift_Del p.K437Rfs*5 0.43 TCGA-BR-4368-01 2 149447829 149447829 A - EPC2 Frame_Shift_Del p.E70Rfs*39 0.24 TCGA-BR-4368-01 2 151326739 151326739 G A RND3 Missense_Mutation p.A166V 0.24 deleterious(0.05) possibly_damaging(0.874) TCGA-BR-4368-01 2 152273371 152273371 G A RIF1 Silent p.T153T 0.24 TCGA-BR-4368-01 2 152476209 152476209 T C NEB Missense_Mutation p.D3543G 0.05 probably_damaging(1) TCGA-BR-4368-01 2 152500546 152500546 G A NEB Missense_Mutation p.A2581V 0.19 probably_damaging(0.997) TCGA-BR-4368-01 2 161223832 161223832 C T RBMS1 Missense_Mutation p.S49N 0.22 tolerated(0.26) benign(0.006) TCGA-BR-4368-01 2 166747406 166747406 G A TTC21B Missense_Mutation p.R1015C 0.19 tolerated(0.21) benign(0.001) TCGA-BR-4368-01 2 168725481 168725481 A G B3GALT1 5'UTR 0.25 TCGA-BR-4368-01 2 169699563 169699563 A - NOSTRIN Frame_Shift_Del p.N191Tfs*9 0.23 TCGA-BR-4368-01 2 169718513 169718513 G A NOSTRIN Silent p.L503L 0.24 TCGA-BR-4368-01 2 170099926 170099926 A G LRP2 Silent p.D1179D 0.18 TCGA-BR-4368-01 2 170493804 170493804 A - PPIG Frame_Shift_Del p.K681Rfs*12 0.25 TCGA-BR-4368-01 2 171572828 171572828 C T SP5 Silent p.A37A 0.23 TCGA-BR-4368-01 2 179397575 179397575 C A TTN Missense_Mutation p.Q34589H 0.19 TCGA-BR-4368-01 2 179416834 179416834 G A TTN Missense_Mutation p.R30265W 0.18 TCGA-BR-4368-01 2 179422586 179422586 G A TTN Silent p.D29165D 0.22 TCGA-BR-4368-01 2 179444123 179444123 G A TTN Intron 0.19 TCGA-BR-4368-01 2 179444665 179444665 C T TTN Splice_Site p.X22450_splice 0.16 TCGA-BR-4368-01 2 179485716 179485716 T - TTN Frame_Shift_Del p.K15207Nfs*5 0.18 TCGA-BR-4368-01 2 179605782 179605782 G T TTN Missense_Mutation p.P4060T 0.19 TCGA-BR-4368-01 2 187541976 187541976 A G ITGAV Missense_Mutation p.Q1035R 0.20 deleterious(0) benign(0.309) TCGA-BR-4368-01 2 189599261 189599261 A - DIRC1 3'UTR 0.16 TCGA-BR-4368-01 2 193049182 193049183 CA - TMEFF2 Frame_Shift_Del p.C103Wfs*10 0.23 TCGA-BR-4368-01 2 196722261 196722261 G A DNAH7 Missense_Mutation p.L2752F 0.22 deleterious(0) probably_damaging(1) TCGA-BR-4368-01 2 200246470 200246470 G A SATB2 Silent p.A140A 0.17 TCGA-BR-4368-01 2 204304285 204304285 G A RAPH1 Silent p.L1210L 0.10 TCGA-BR-4368-01 2 204591543 204591543 A - CD28 Frame_Shift_Del p.T82Rfs*14 0.22 TCGA-BR-4368-01 2 205990401 205990401 G - PARD3B Frame_Shift_Del p.E460Rfs*25 0.24 TCGA-BR-4368-01 2 215809820 215809820 C T ABCA12 Silent p.P2416P 0.18 TCGA-BR-4368-01 2 215843717 215843717 T C ABCA12 Silent p.T1596T 0.14 TCGA-BR-4368-01 2 217280167 217280167 G A SMARCAL1 Missense_Mutation p.R247H 0.22 deleterious(0) probably_damaging(0.999) TCGA-BR-4368-01 2 219562280 219562280 G A STK36 Missense_Mutation p.M952I 0.21 deleterious(0.03) benign(0.04) TCGA-BR-4368-01 2 219736229 219736229 G A WNT6 Silent p.V108V 0.17 TCGA-BR-4368-01 2 219745808 219745808 C T WNT10A Silent p.L31L 0.43 TCGA-BR-4368-01 2 219754704 219754704 A G WNT10A Splice_Site p.X126_splice 0.24 TCGA-BR-4368-01 2 220396848 220396848 C T ASIC4 Missense_Mutation p.R412W 0.20 deleterious(0.02) probably_damaging(0.989) TCGA-BR-4368-01 2 220439886 220439886 C T INHA Missense_Mutation p.R247C 0.19 deleterious(0.01) possibly_damaging(0.776) TCGA-BR-4368-01 2 220500084 220500084 C T SLC4A3 Missense_Mutation p.P640L 0.21 deleterious(0) probably_damaging(1) TCGA-BR-4368-01 2 231775249 231775249 G A GPR55 Silent p.C143C 0.21 TCGA-BR-4368-01 2 233274566 233274566 C T ALPPL2 Missense_Mutation p.T528M 0.27 tolerated_low_confidence(0.15) unknown(0) TCGA-BR-4368-01 2 233349233 233349233 G A ECEL1 Missense_Mutation p.A378V 0.22 deleterious(0) probably_damaging(0.963) TCGA-BR-4368-01 2 234668982 234668982 C T UGT1A8 Intron 0.20 TCGA-BR-4368-01 2 238289604 238289604 C T COL6A3 Silent p.L617L 0.17 TCGA-BR-4368-01 2 241516387 241516387 C T RNPEPL1 Missense_Mutation p.R391W 0.19 deleterious(0) probably_damaging(0.999) TCGA-BR-4368-01 2 242065690 242065690 G A PASK Silent p.R880R 0.23 TCGA-BR-4368-01 2 242079329 242079329 C A PASK Missense_Mutation p.G191C 0.18 deleterious(0) probably_damaging(1) TCGA-BR-4368-01 2 24521655 24521655 C T ITSN2 Missense_Mutation p.R458H 0.25 deleterious(0) unknown(0) TCGA-BR-4368-01 2 25965592 25965592 G A ASXL2 Missense_Mutation p.A1205V 0.21 deleterious(0.03) benign(0.098) TCGA-BR-4368-01 2 26178514 26178514 T A KIF3C Missense_Mutation p.M556L 0.24 benign(0.002) TCGA-BR-4368-01 2 26178519 26178519 C T KIF3C Missense_Mutation p.R554Q 0.22 benign(0.289) TCGA-BR-4368-01 2 26492864 26492864 A T HADHB Missense_Mutation p.T85S 0.05 tolerated(0.87) benign(0.001) TCGA-BR-4368-01 2 26998046 26998046 G A SLC35F6 Silent p.A95A 0.21 TCGA-BR-4368-01 2 27248479 27248479 A - MAPRE3 Frame_Shift_Del p.N168Tfs*8 0.22 TCGA-BR-4368-01 2 27351875 27351875 G A ABHD1 Missense_Mutation p.S113N 0.21 tolerated(0.2) benign(0.037) TCGA-BR-4368-01 2 29294162 29294162 G - C2orf71 Frame_Shift_Del p.P989Lfs*46 0.21 TCGA-BR-4368-01 2 39456572 39456572 T - CDKL4 Frame_Shift_Del p.K34Nfs*14 0.29 TCGA-BR-4368-01 2 48026138 48026138 C A MSH6 Missense_Mutation p.A339D 0.17 tolerated(0.45) benign(0.411) TCGA-BR-4368-01 2 54081175 54081175 G - GPR75 Frame_Shift_Del p.P240Lfs*2 0.24 TCGA-BR-4368-01 2 55561645 55561646 - T CCDC88A Frame_Shift_Ins p.T771Nfs*7 0.15 TCGA-BR-4368-01 2 55561755 55561755 T - CCDC88A Frame_Shift_Del p.E735Sfs*10 0.11 TCGA-BR-4368-01 2 70164409 70164409 C T MXD1 Nonsense_Mutation p.Q121* 0.25 TCGA-BR-4368-01 2 70188638 70188638 C T ASPRV1 Silent p.A61A 0.20 TCGA-BR-4368-01 2 71894590 71894590 C T DYSF Missense_Mutation p.P1801L 0.31 deleterious(0.01) probably_damaging(0.964) TCGA-BR-4368-01 2 73518943 73518943 G A EGR4 Missense_Mutation p.T471M 0.27 deleterious(0) benign(0.229) TCGA-BR-4368-01 2 73677057 73677057 G A ALMS1 Missense_Mutation p.G1134S 0.18 benign(0.013) TCGA-BR-4368-01 2 74597938 74597938 C T DCTN1 Silent p.A286A 0.21 TCGA-BR-4368-01 2 74761465 74761465 G A LOXL3 Silent p.L639L 0.29 TCGA-BR-4368-01 2 79348754 79348754 G A REG1A Missense_Mutation p.R44H 0.22 deleterious(0.03) benign(0.003) TCGA-BR-4368-01 2 85769750 85769750 T C MAT2A Silent p.H277H 0.25 TCGA-BR-4368-01 2 89512934 89512934 A G IGKV1-27 Missense_Mutation p.Y109H 0.12 deleterious(0.03) benign(0.246) TCGA-BR-4368-01 2 90249344 90249344 G T IGKV1D-43 Silent p.L100L 0.14 TCGA-BR-4368-01 2 9525431 9525431 C T ASAP2 Nonsense_Mutation p.R692* 0.12 TCGA-BR-4368-01 2 99413824 99413824 C T KIAA1211L Missense_Mutation p.E865K 0.19 deleterious(0.04) possibly_damaging(0.684) TCGA-BR-4368-01 3 100964716 100964716 C T IMPG2 Silent p.P491P 0.20 TCGA-BR-4368-01 3 109049450 109049450 C A DPPA4 Missense_Mutation p.E200D 0.33 tolerated(0.38) benign(0.036) TCGA-BR-4368-01 3 110852822 110852822 A - PVRL3 Frame_Shift_Del p.E473Kfs*6 0.40 TCGA-BR-4368-01 3 111604188 111604188 C T PHLDB2 Missense_Mutation p.R422C 0.34 deleterious(0) possibly_damaging(0.677) TCGA-BR-4368-01 3 113212908 113212908 G A SPICE1 Missense_Mutation p.R125C 0.13 deleterious(0.03) benign(0.057) TCGA-BR-4368-01 3 114058088 114058088 A G ZBTB20 Missense_Mutation p.C664R 0.18 deleterious(0) probably_damaging(0.99) TCGA-BR-4368-01 3 114070354 114070354 G A ZBTB20 Missense_Mutation p.R191C 0.36 deleterious(0) probably_damaging(0.993) TCGA-BR-4368-01 3 121573634 121573634 A - EAF2 Frame_Shift_Del p.K102Nfs*8 0.16 TCGA-BR-4368-01 3 121658261 121658261 G A SLC15A2 Silent p.A609A 0.40 TCGA-BR-4368-01 3 123419170 123419170 G A MYLK Missense_Mutation p.P1049S 0.39 tolerated(0.16) benign(0.093) TCGA-BR-4368-01 3 125701223 125701223 C T ROPN1B Silent p.A169A 0.16 TCGA-BR-4368-01 3 126200994 126200994 C T UROC1 3'UTR 0.40 TCGA-BR-4368-01 3 127396115 127396115 C - ABTB1 Frame_Shift_Del p.E252Sfs*102 0.30 TCGA-BR-4368-01 3 127396654 127396654 G A ABTB1 Missense_Mutation p.V333M 0.31 deleterious(0) probably_damaging(0.984) TCGA-BR-4368-01 3 132319752 132319752 C - ACKR4 Frame_Shift_Del p.Q172Sfs*7 0.24 TCGA-BR-4368-01 3 132349315 132349315 G A ACAD11 Missense_Mutation p.A310V 0.30 deleterious(0.02) probably_damaging(0.94) TCGA-BR-4368-01 3 133371424 133371424 G A TOPBP1 Silent p.C324C 0.34 TCGA-BR-4368-01 3 13367333 13367333 A G NUP210 Missense_Mutation p.Y1536H 0.14 tolerated(0.06) benign(0.006) TCGA-BR-4368-01 3 1339624 1339624 T C CNTN6 Missense_Mutation p.I237T 0.05 tolerated(0.21) benign(0.026) TCGA-BR-4368-01 3 136573873 136573873 C - SLC35G2 Frame_Shift_Del p.S192Afs*23 0.19 TCGA-BR-4368-01 3 137811279 137811279 T - DZIP1L Frame_Shift_Del p.K272Nfs*17 0.15 TCGA-BR-4368-01 3 137880841 137880841 G A DBR1 Missense_Mutation p.P509S 0.31 tolerated(0.27) benign(0.005) TCGA-BR-4368-01 3 142840892 142840892 C - CHST2 Frame_Shift_Del p.P413Lfs*35 0.14 TCGA-BR-4368-01 3 14538015 14538015 G A GRIP2 RNA 0.30 TCGA-BR-4368-01 3 150883689 150883689 G A MED12L Missense_Mutation p.D472N 0.05 deleterious(0) probably_damaging(0.995) TCGA-BR-4368-01 3 151161469 151161469 T C IGSF10 Missense_Mutation p.T1756A 0.32 deleterious(0) probably_damaging(0.996) TCGA-BR-4368-01 3 157154774 157154774 G A PTX3 Missense_Mutation p.E18K 0.18 tolerated(0.14) benign(0.178) TCGA-BR-4368-01 3 16345145 16345145 T - OXNAD1 3'UTR 0.37 TCGA-BR-4368-01 3 170611132 170611132 A G EIF5A2 3'UTR 0.33 TCGA-BR-4368-01 3 172165336 172165336 A G GHSR Intron 0.20 TCGA-BR-4368-01 3 176756141 176756141 A G TBL1XR1 Missense_Mutation p.L336S 0.40 deleterious(0) possibly_damaging(0.77) TCGA-BR-4368-01 3 182987655 182987655 T - B3GNT5 Frame_Shift_Del p.L25* 0.23 TCGA-BR-4368-01 3 184005700 184005700 G A ECE2 Missense_Mutation p.V565M 0.38 deleterious(0) probably_damaging(1) TCGA-BR-4368-01 3 185641637 185641637 G A TRA2B Missense_Mutation p.R157C 0.19 deleterious(0.03) benign(0.398) TCGA-BR-4368-01 3 186456933 186456933 A G KNG1 Missense_Mutation p.T326A 0.20 deleterious(0) probably_damaging(0.999) TCGA-BR-4368-01 3 194062974 194062974 T C CPN2 Missense_Mutation p.Q153R 0.20 tolerated(0.2) benign(0.152) TCGA-BR-4368-01 3 194408798 194408798 G A FAM43A Missense_Mutation p.A415T 0.29 tolerated_low_confidence(0.17) benign(0.001) TCGA-BR-4368-01 3 196387199 196387199 C T NRROS Missense_Mutation p.R229W 0.38 deleterious(0.01) possibly_damaging(0.724) TCGA-BR-4368-01 3 196537509 196537509 A - PAK2 Frame_Shift_Del p.I255Lfs*36 0.13 TCGA-BR-4368-01 3 196539089 196539089 G A PAK2 Splice_Site p.X258_splice 0.12 TCGA-BR-4368-01 3 196674360 196674360 G - PIGZ Frame_Shift_Del p.R470Gfs*30 0.33 TCGA-BR-4368-01 3 197444966 197444966 G A KIAA0226 Missense_Mutation p.T34M 0.06 deleterious(0) probably_damaging(0.987) TCGA-BR-4368-01 3 20215937 20215939 GTT - SGOL1 In_Frame_Del p.N362del 0.19 TCGA-BR-4368-01 3 27161323 27161323 A G NEK10 Missense_Mutation p.F1097L 0.04 tolerated(0.7) benign(0.207) TCGA-BR-4368-01 3 32200470 32200470 G A GPD1L Missense_Mutation p.A241T 0.06 tolerated(0.1) benign(0.101) TCGA-BR-4368-01 3 33195131 33195131 T G SUSD5 Silent p.P331P 0.04 TCGA-BR-4368-01 3 33686903 33686903 A - CLASP2 Intron 0.34 TCGA-BR-4368-01 3 33887074 33887074 C T PDCD6IP Silent p.G550G 0.19 TCGA-BR-4368-01 3 36884133 36884133 C T TRANK1 Missense_Mutation p.A1710T 0.15 tolerated(0.1) benign(0.082) TCGA-BR-4368-01 3 37574834 37574834 C A ITGA9 Missense_Mutation p.S468Y 0.19 deleterious(0) probably_damaging(0.981) TCGA-BR-4368-01 3 38048186 38048186 A C VILL Silent p.R818R 0.33 TCGA-BR-4368-01 3 38763831 38763831 C T SCN10A Missense_Mutation p.R1142H 0.16 deleterious(0) probably_damaging(1) TCGA-BR-4368-01 3 40433741 40433741 C - ENTPD3 Intron 0.30 TCGA-BR-4368-01 3 42727821 42727821 C T KLHL40 Silent p.R237R 0.43 TCGA-BR-4368-01 3 42906869 42906869 A G ACKR2 Missense_Mutation p.Y292C 0.03 deleterious(0) probably_damaging(1) TCGA-BR-4368-01 3 42916264 42916264 G A CYP8B1 Missense_Mutation p.R349W 0.32 deleterious(0) probably_damaging(1) TCGA-BR-4368-01 3 447269 447269 G A CHL1 Missense_Mutation p.G1184R 0.29 deleterious(0) probably_damaging(1) TCGA-BR-4368-01 3 45527192 45527192 A G LARS2 Missense_Mutation p.T343A 0.35 deleterious(0.02) possibly_damaging(0.679) TCGA-BR-4368-01 3 46754421 46754421 C T PRSS50 Silent p.A297A 0.34 TCGA-BR-4368-01 3 47316957 47316957 T - KIF9 Frame_Shift_Del p.D40Tfs*64 0.27 TCGA-BR-4368-01 3 47448823 47448823 G A PTPN23 Missense_Mutation p.A297T 0.30 unknown(0) TCGA-BR-4368-01 3 47452588 47452588 C - PTPN23 Frame_Shift_Del p.P1102Qfs*58 0.38 TCGA-BR-4368-01 3 47888228 47888228 G A DHX30 Missense_Mutation p.V556I 0.28 tolerated(0.12) benign(0.293) TCGA-BR-4368-01 3 47890951 47890951 G A DHX30 Missense_Mutation p.G1033D 0.28 deleterious(0.01) benign(0.238) TCGA-BR-4368-01 3 48464208 48464208 G A PLXNB1 Missense_Mutation p.A419V 0.30 tolerated(0.15) possibly_damaging(0.605) TCGA-BR-4368-01 3 48605162 48605162 G A COL7A1 Missense_Mutation p.A2655V 0.08 possibly_damaging(0.573) TCGA-BR-4368-01 3 48658932 48658932 C T TMEM89 Silent p.L86L 0.17 TCGA-BR-4368-01 3 48789046 48789046 C T PRKAR2A Missense_Mutation p.S396N 0.08 tolerated(0.56) possibly_damaging(0.488) TCGA-BR-4368-01 3 49154769 49154769 A C USP19 Missense_Mutation p.L211R 0.06 tolerated_low_confidence(0.52) benign(0.066) TCGA-BR-4368-01 3 49314258 49314258 T - C3orf62 Frame_Shift_Del p.K16Nfs*2 0.30 TCGA-BR-4368-01 3 49693698 49693698 C T BSN Missense_Mutation p.P2237S 0.12 unknown(0) TCGA-BR-4368-01 3 49738978 49738980 GGA - RNF123 In_Frame_Del p.E446del 0.25 TCGA-BR-4368-01 3 50005144 50005145 - G RBM6 Frame_Shift_Ins p.D99Rfs*6 0.27 TCGA-BR-4368-01 3 50106123 50106123 C T RBM6 Nonsense_Mutation p.Q982* 0.18 TCGA-BR-4368-01 3 50313251 50313251 C T LSMEM2 5'Flank 0.38 TCGA-BR-4368-01 3 50357842 50357842 C T HYAL2 Missense_Mutation p.A27T 0.09 tolerated(0.49) benign(0.008) TCGA-BR-4368-01 3 50655080 50655080 G - MAPKAPK3 Frame_Shift_Del p.R31Gfs*9 0.30 TCGA-BR-4368-01 3 51395259 51395259 T G DOCK3 Missense_Mutation p.L1585R 0.09 deleterious(0) probably_damaging(0.977) TCGA-BR-4368-01 3 51752116 51752116 G A GRM2 Silent p.T869T 0.18 TCGA-BR-4368-01 3 51979569 51979569 C T PARP3 Missense_Mutation p.T314M 0.08 tolerated(0.34) benign(0.002) TCGA-BR-4368-01 3 52263948 52263948 G - TWF2 Frame_Shift_Del p.E251Sfs*3 0.41 TCGA-BR-4368-01 3 52391956 52391956 G A DNAH1 Silent p.S1341S 0.11 TCGA-BR-4368-01 3 52422920 52422920 C T DNAH1 Silent p.A3154A 0.10 TCGA-BR-4368-01 3 52588798 52588798 C - PBRM1 Frame_Shift_Del p.P1411Lfs*21 0.28 TCGA-BR-4368-01 3 53220294 53220294 G A PRKCD Missense_Mutation p.V400M 0.15 deleterious(0) probably_damaging(0.922) TCGA-BR-4368-01 3 53531320 53531320 G A CACNA1D Missense_Mutation p.S70N 0.41 tolerated_low_confidence(0.53) benign(0.002) TCGA-BR-4368-01 3 54952605 54952605 C T LRTM1 Missense_Mutation p.A307T 0.17 deleterious(0.04) benign(0.275) TCGA-BR-4368-01 3 56657240 56657240 A G FAM208A 3'UTR 0.06 TCGA-BR-4368-01 3 56681079 56681079 A - FAM208A Frame_Shift_Del p.F562Lfs*21 0.34 TCGA-BR-4368-01 3 58155348 58155348 C T FLNB Silent p.N2514N 0.30 TCGA-BR-4368-01 3 62535675 62535675 C T CADPS Silent p.T623T 0.27 TCGA-BR-4368-01 3 63973915 63973915 C T ATXN7 Missense_Mutation p.H426Y 0.39 tolerated(0.15) probably_damaging(0.92) TCGA-BR-4368-01 3 65344808 65344808 G A MAGI1 Intron 0.15 TCGA-BR-4368-01 3 9517294 9517295 - C SETD5 Frame_Shift_Ins p.S1286Lfs*37 0.28 TCGA-BR-4368-01 3 9867508 9867508 C T TTLL3 Silent p.L393L 0.09 TCGA-BR-4368-01 4 106156409 106156409 A G TET2 Missense_Mutation p.Y437C 0.15 deleterious(0.03) benign(0.048) TCGA-BR-4368-01 4 106621122 106621122 A - INTS12 Frame_Shift_Del p.L14* 0.23 TCGA-BR-4368-01 4 108615044 108615044 A G PAPSS1 Silent p.N98N 0.12 TCGA-BR-4368-01 4 109084737 109084737 G A LEF1 Missense_Mutation p.P134L 0.19 tolerated(0.13) probably_damaging(0.948) TCGA-BR-4368-01 4 111553611 111553611 A G PITX2 Silent p.C24C 0.11 TCGA-BR-4368-01 4 114275575 114275575 A - ANK2 Frame_Shift_Del p.K1935Nfs*59 0.26 TCGA-BR-4368-01 4 120177651 120177651 T C USP53 Missense_Mutation p.V181A 0.15 deleterious(0.01) probably_damaging(0.991) TCGA-BR-4368-01 4 120193037 120193037 G A USP53 Silent p.V674V 0.20 TCGA-BR-4368-01 4 123301319 123301319 C T ADAD1 Missense_Mutation p.T32M 0.17 tolerated(0.21) benign(0.003) TCGA-BR-4368-01 4 1235170 1235170 T - CTBP1 Intron 0.19 TCGA-BR-4368-01 4 129012184 129012184 T C LARP1B Silent p.D129D 0.22 TCGA-BR-4368-01 4 1343514 1343514 C - UVSSA Frame_Shift_Del p.R103Gfs*7 0.40 TCGA-BR-4368-01 4 138453024 138453025 - T PCDH18 Frame_Shift_Ins p.N73Kfs*11 0.20 TCGA-BR-4368-01 4 141543335 141543335 G A TBC1D9 3'UTR 0.21 TCGA-BR-4368-01 4 144387375 144387375 T C GAB1 Silent p.R671R 0.17 TCGA-BR-4368-01 4 15060834 15060834 A G CPEB2 Silent p.L868L 0.18 TCGA-BR-4368-01 4 155254486 155254486 T C DCHS2 Silent p.P459P 0.24 TCGA-BR-4368-01 4 155665562 155665562 C T LRAT Silent p.G28G 0.25 TCGA-BR-4368-01 4 155720533 155720533 T A RBM46 Missense_Mutation p.W407R 0.25 deleterious(0) probably_damaging(0.999) TCGA-BR-4368-01 4 158254500 158254500 C T GRIA2 Missense_Mutation p.R384W 0.18 deleterious(0.01) possibly_damaging(0.756) TCGA-BR-4368-01 4 16504380 16504380 G A LDB2 Silent p.D336D 0.04 TCGA-BR-4368-01 4 165961522 165961522 C T TRIM60 Missense_Mutation p.H100Y 0.26 deleterious(0) probably_damaging(0.993) TCGA-BR-4368-01 4 186379494 186379494 G A CCDC110 Silent p.Y749Y 0.21 TCGA-BR-4368-01 4 186583258 186583258 C T SORBS2 Missense_Mutation p.D132N 0.27 tolerated(0.17) benign(0.36) TCGA-BR-4368-01 4 187519161 187519162 AA - FAT1 Frame_Shift_Del p.F4074Cfs*5 0.19 TCGA-BR-4368-01 4 20620584 20620584 C T SLIT2 Silent p.D1514D 0.11 TCGA-BR-4368-01 4 25005545 25005545 A G LGI2 Missense_Mutation p.L389P 0.07 deleterious(0) probably_damaging(1) TCGA-BR-4368-01 4 25664381 25664381 C T SLC34A2 Missense_Mutation p.T56M 0.21 deleterious(0.01) possibly_damaging(0.88) TCGA-BR-4368-01 4 2695386 2695386 G A FAM193A Silent p.T668T 0.21 TCGA-BR-4368-01 4 39310257 39310257 G A RFC1 Silent p.H628H 0.20 TCGA-BR-4368-01 4 40115053 40115053 C A N4BP2 Missense_Mutation p.S530Y 0.19 deleterious(0) probably_damaging(0.928) TCGA-BR-4368-01 4 40337892 40337892 T - CHRNA9 Frame_Shift_Del p.F39Lfs*18 0.21 TCGA-BR-4368-01 4 41748245 41748245 T - PHOX2B Frame_Shift_Del p.K175Sfs*134 0.17 TCGA-BR-4368-01 4 42403231 42403231 G A SHISA3 Silent p.R160R 0.16 TCGA-BR-4368-01 4 4248030 4248030 T C TMEM128 Silent p.P22P 0.14 TCGA-BR-4368-01 4 4270269 4270270 - T LYAR Frame_Shift_Ins p.L332Afs*15 0.20 TCGA-BR-4368-01 4 4411321 4411321 G A NSG1 Missense_Mutation p.A90T 0.24 tolerated(0.48) probably_damaging(0.999) TCGA-BR-4368-01 4 47559941 47559942 AG - ATP10D Frame_Shift_Del p.K697Tfs*4 0.29 TCGA-BR-4368-01 4 48490497 48490497 C T SLC10A4 Silent p.G285G 0.17 TCGA-BR-4368-01 4 56283253 56283253 G A TMEM165 Missense_Mutation p.A150T 0.20 deleterious(0.01) probably_damaging(0.983) TCGA-BR-4368-01 4 57777446 57777446 C - REST Frame_Shift_Del p.I216Ffs*20 0.23 TCGA-BR-4368-01 4 57860640 57860640 C A POLR2B Missense_Mutation p.P105H 0.28 tolerated(0.11) possibly_damaging(0.853) TCGA-BR-4368-01 4 57861549 57861549 G A POLR2B Missense_Mutation p.V237I 0.21 tolerated(0.7) benign(0.032) TCGA-BR-4368-01 4 57907023 57907023 G A IGFBP7 Silent p.I184I 0.30 TCGA-BR-4368-01 4 62801758 62801758 G A LPHN3 Missense_Mutation p.R737Q 0.25 deleterious(0.01) possibly_damaging(0.605) TCGA-BR-4368-01 4 6588761 6588761 C T MAN2B2 Missense_Mutation p.P144S 0.27 deleterious(0.03) probably_damaging(0.975) TCGA-BR-4368-01 4 69795767 69795767 G A UGT2A3 Nonsense_Mutation p.Q450* 0.13 TCGA-BR-4368-01 4 77661573 77661573 G A SHROOM3 Silent p.S749S 0.19 TCGA-BR-4368-01 4 81124739 81124739 G A PRDM8 3'UTR 0.44 TCGA-BR-4368-01 4 81884720 81884720 A G C4orf22 Missense_Mutation p.Y236C 0.12 deleterious(0) probably_damaging(0.999) TCGA-BR-4368-01 4 82090847 82090847 C T PRKG2 Missense_Mutation p.R273K 0.14 tolerated(0.29) benign(0.015) TCGA-BR-4368-01 4 83867618 83867618 A G LIN54 Missense_Mutation p.S321P 0.09 tolerated(0.29) benign(0.005) TCGA-BR-4368-01 4 8477523 8477523 G A TRMT44 Missense_Mutation p.R690H 0.24 deleterious(0) probably_damaging(0.997) TCGA-BR-4368-01 4 8603054 8603054 G A CPZ Missense_Mutation p.C109Y 0.20 deleterious(0) probably_damaging(1) TCGA-BR-4368-01 4 86916256 86916256 C T ARHGAP24 Silent p.R483R 0.21 TCGA-BR-4368-01 4 88091651 88091651 G A KLHL8 Missense_Mutation p.T442I 0.10 tolerated(0.21) benign(0.049) TCGA-BR-4368-01 4 94376883 94376883 G A GRID2 Missense_Mutation p.R539H 0.29 deleterious(0.01) probably_damaging(1) TCGA-BR-4368-01 4 96052564 96052564 C T BMPR1B Missense_Mutation p.P356L 0.16 deleterious(0.05) probably_damaging(0.957) TCGA-BR-4368-01 4 99403314 99403314 G - TSPAN5 Frame_Shift_Del p.L98Wfs*14 0.17 TCGA-BR-4368-01 5 100147699 100147699 G A ST8SIA4 Missense_Mutation p.A311V 0.17 benign(0.011) TCGA-BR-4368-01 5 101631748 101631748 C T SLCO4C1 Silent p.E73E 0.17 TCGA-BR-4368-01 5 10239372 10239372 A G FAM173B Missense_Mutation p.F38S 0.21 deleterious(0.04) benign(0.197) TCGA-BR-4368-01 5 10260965 10260965 A G CCT5 Missense_Mutation p.H312R 0.04 deleterious(0) probably_damaging(0.983) TCGA-BR-4368-01 5 111576418 111576418 A - EPB41L4A Frame_Shift_Del p.F295Lfs*35 0.28 TCGA-BR-4368-01 5 112889545 112889545 A - YTHDC2 Frame_Shift_Del p.I684* 0.22 TCGA-BR-4368-01 5 115813758 115813758 A G SEMA6A Missense_Mutation p.V507A 0.09 deleterious(0) benign(0.396) TCGA-BR-4368-01 5 121188033 121188033 C T FTMT Silent p.H125H 0.15 TCGA-BR-4368-01 5 121488812 121488812 C G ZNF474 3'UTR 0.19 TCGA-BR-4368-01 5 125759363 125759363 G A GRAMD3 Intron 0.22 TCGA-BR-4368-01 5 128984535 128984535 A G ADAMTS19 Missense_Mutation p.Y677C 0.15 deleterious(0) probably_damaging(0.95) TCGA-BR-4368-01 5 130762855 130762855 T C CTC-432M15.3 3'UTR 0.18 TCGA-BR-4368-01 5 131796357 131796357 T C C5orf56 Silent p.H64H 0.20 TCGA-BR-4368-01 5 132560966 132560966 G A FSTL4 Silent p.S396S 0.20 TCGA-BR-4368-01 5 1325892 1325892 A - CLPTM1L Frame_Shift_Del p.W374Gfs*4 0.16 TCGA-BR-4368-01 5 139193088 139193088 G A PSD2 Missense_Mutation p.R189H 0.25 tolerated(0.07) benign(0.006) TCGA-BR-4368-01 5 13928247 13928247 C T DNAH5 Missense_Mutation p.R78Q 0.13 benign(0.238) TCGA-BR-4368-01 5 139946788 139946788 G T SLC35A4 Missense_Mutation p.G12C 0.15 deleterious(0.03) possibly_damaging(0.82) TCGA-BR-4368-01 5 140052887 140052887 G A DND1 Silent p.N37N 0.19 TCGA-BR-4368-01 5 140166202 140166202 C T PCDHA1 Silent p.I109I 0.21 TCGA-BR-4368-01 5 140174554 140174554 C T PCDHA2 Missense_Mutation p.A2V 0.18 tolerated_low_confidence(1) benign(0.002) TCGA-BR-4368-01 5 140202649 140202649 G A PCDHA5 Missense_Mutation p.G430D 0.20 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-BR-4368-01 5 140215225 140215225 C T PCDHA7 Silent p.S419S 0.27 TCGA-BR-4368-01 5 140215333 140215333 C T PCDHA7 Silent p.F455F 0.21 TCGA-BR-4368-01 5 140348144 140348144 C T PCDHAC2 Missense_Mutation p.A598V 0.22 tolerated(0.24) benign(0.326) TCGA-BR-4368-01 5 140431483 140431483 C T PCDHB1 Missense_Mutation p.P143L 0.15 tolerated(0.35) probably_damaging(1) TCGA-BR-4368-01 5 140480141 140480141 G A PCDHB3 5'Flank 0.26 TCGA-BR-4368-01 5 140515561 140515561 C T PCDHB5 Missense_Mutation p.T182M 0.20 tolerated_low_confidence(0.09) benign(0.165) TCGA-BR-4368-01 5 140531365 140531365 C T PCDHB6 Silent p.G509G 0.16 TCGA-BR-4368-01 5 140558115 140558115 A G PCDHB8 Missense_Mutation p.N167S 0.06 tolerated_low_confidence(1) benign(0.001) TCGA-BR-4368-01 5 140559035 140559035 G A PCDHB8 Missense_Mutation p.V474I 0.07 tolerated_low_confidence(0.44) benign(0.03) TCGA-BR-4368-01 5 140588900 140588900 G C PCDHB12 Missense_Mutation p.E141Q 0.17 deleterious_low_confidence(0.01) benign(0.034) TCGA-BR-4368-01 5 140590328 140590328 G A PCDHB12 Missense_Mutation p.V617M 0.10 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-BR-4368-01 5 140615735 140615735 G A PCDHB18 RNA 0.08 TCGA-BR-4368-01 5 140712592 140712592 A G PCDHGA1 Missense_Mutation p.S781G 0.24 deleterious_low_confidence(0) possibly_damaging(0.887) TCGA-BR-4368-01 5 140731932 140731932 C T PCDHGB1 Missense_Mutation p.A702V 0.24 tolerated(0.23) possibly_damaging(0.67) TCGA-BR-4368-01 5 140794669 140794669 A G PCDHGA10 Missense_Mutation p.K643E 0.22 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-BR-4368-01 5 140807370 140807370 G A PCDHGB6 Intron 0.25 TCGA-BR-4368-01 5 140811073 140811073 G A PCDHGA12 Silent p.A249A 0.21 TCGA-BR-4368-01 5 140812291 140812291 C T PCDHGA12 Silent p.S655S 0.16 TCGA-BR-4368-01 5 141020095 141020095 C - FCHSD1 3'UTR 0.21 TCGA-BR-4368-01 5 145199532 145199532 G A PRELID2 Silent p.N61N 0.27 TCGA-BR-4368-01 5 146788290 146788290 C T DPYSL3 Splice_Site p.X344_splice 0.22 TCGA-BR-4368-01 5 14711209 14711209 A - ANKH 3'UTR 0.42 TCGA-BR-4368-01 5 14713763 14713763 C T ANKH Silent p.A385A 0.12 TCGA-BR-4368-01 5 147695253 147695253 C A SPINK7 3'UTR 0.28 TCGA-BR-4368-01 5 147813209 147813209 A G FBXO38 Silent p.L847L 0.24 TCGA-BR-4368-01 5 148206896 148206896 C T ADRB2 Missense_Mutation p.P168S 0.25 deleterious(0) probably_damaging(1) TCGA-BR-4368-01 5 149433761 149433761 G A CSF1R Silent p.S930S 0.21 TCGA-BR-4368-01 5 149900697 149900697 G A NDST1 5'UTR 0.15 TCGA-BR-4368-01 5 150411961 150411961 G A TNIP1 Intron 0.16 TCGA-BR-4368-01 5 150931050 150931050 C T FAT2 Missense_Mutation p.G1425E 0.25 probably_damaging(1) TCGA-BR-4368-01 5 150946645 150946645 G A FAT2 Silent p.S616S 0.29 TCGA-BR-4368-01 5 151784744 151784744 A G NMUR2 5'UTR 0.30 TCGA-BR-4368-01 5 156590335 156590335 G A FAM71B Missense_Mutation p.A314V 0.20 deleterious(0.01) possibly_damaging(0.667) TCGA-BR-4368-01 5 158204430 158204430 T C EBF1 Missense_Mutation p.I343V 0.19 tolerated(1) benign(0.001) TCGA-BR-4368-01 5 161116284 161116284 C T GABRA6 Silent p.P157P 0.12 TCGA-BR-4368-01 5 162909718 162909718 G A HMMR Missense_Mutation p.A486T 0.23 tolerated(0.36) benign(0.011) TCGA-BR-4368-01 5 167850695 167850695 C T WWC1 Nonsense_Mutation p.Q478* 0.16 TCGA-BR-4368-01 5 169697783 169697783 C T LCP2 Missense_Mutation p.A155T 0.24 tolerated(0.25) benign(0.024) TCGA-BR-4368-01 5 171481591 171481591 G A STK10 Silent p.S878S 0.24 TCGA-BR-4368-01 5 176070674 176070674 C T EIF4E1B Missense_Mutation p.R79W 0.21 deleterious(0) probably_damaging(0.989) TCGA-BR-4368-01 5 176673695 176673695 T C NSD1 Silent p.F1465F 0.09 TCGA-BR-4368-01 5 178555066 178555066 A G ADAMTS2 Silent p.H837H 0.07 TCGA-BR-4368-01 5 180041166 180041166 A G FLT4 Missense_Mutation p.L1078P 0.14 deleterious(0) probably_damaging(0.995) TCGA-BR-4368-01 5 180219105 180219105 G A MGAT1 Silent p.D289D 0.23 TCGA-BR-4368-01 5 31267788 31267788 G A CDH6 Missense_Mutation p.D70N 0.24 deleterious(0.04) probably_damaging(0.993) TCGA-BR-4368-01 5 32061224 32061224 G A PDZD2 Missense_Mutation p.R812Q 0.23 deleterious(0) probably_damaging(0.999) TCGA-BR-4368-01 5 33963963 33963963 G T SLC45A2 Missense_Mutation p.P241T 0.25 deleterious(0.02) possibly_damaging(0.817) TCGA-BR-4368-01 5 35694403 35694403 T C SPEF2 Missense_Mutation p.V638A 0.23 tolerated(0.74) benign(0) TCGA-BR-4368-01 5 3599758 3599758 G C IRX1 Missense_Mutation p.K232N 0.24 tolerated(0.31) probably_damaging(0.95) TCGA-BR-4368-01 5 50090845 50090845 G A PARP8 Missense_Mutation p.G341D 0.28 deleterious_low_confidence(0.02) benign(0.135) TCGA-BR-4368-01 5 52954446 52954446 A - NDUFS4 Frame_Shift_Del p.N141Mfs*48 0.16 TCGA-BR-4368-01 5 5306831 5306831 C T ADAMTS16 Missense_Mutation p.P1134L 0.27 deleterious(0) possibly_damaging(0.789) TCGA-BR-4368-01 5 54423154 54423154 C T CDC20B Missense_Mutation p.R307Q 0.16 tolerated(0.08) benign(0.019) TCGA-BR-4368-01 5 58120900 58120900 C T RAB3C Missense_Mutation p.A136V 0.18 tolerated(0.99) benign(0.017) TCGA-BR-4368-01 5 64946674 64946675 - A TRAPPC13 Frame_Shift_Ins p.M158Nfs*27 0.18 TCGA-BR-4368-01 5 65319175 65319175 C A ERBB2IP Missense_Mutation p.L219M 0.12 deleterious(0) probably_damaging(1) TCGA-BR-4368-01 5 68590716 68590716 G A CCDC125 Silent p.L276L 0.25 TCGA-BR-4368-01 5 68875669 68875669 T C GTF2H2C Silent p.S245S 0.19 TCGA-BR-4368-01 5 71015123 71015123 G A CARTPT Translation_Start_Site p.M1? 0.14 deleterious(0) benign(0.38) TCGA-BR-4368-01 5 71756924 71756924 C T ZNF366 Missense_Mutation p.V134M 0.21 deleterious_low_confidence(0.03) benign(0.044) TCGA-BR-4368-01 5 75621377 75621377 A - SV2C 3'UTR 0.20 TCGA-BR-4368-01 5 7867769 7867769 T - FASTKD3 Frame_Shift_Del p.K143Rfs*36 0.22 TCGA-BR-4368-01 5 79773189 79773189 T - ZFYVE16 Frame_Shift_Del p.*1540S 0.22 TCGA-BR-4368-01 5 83476311 83476311 A G EDIL3 Silent p.N85N 0.11 TCGA-BR-4368-01 5 840720 840720 G A ZDHHC11 Missense_Mutation p.P225L 0.12 deleterious(0) possibly_damaging(0.688) TCGA-BR-4368-01 5 86686785 86686785 A - RASA1 3'Flank 0.36 TCGA-BR-4368-01 5 89695208 89695208 T C CETN3 Missense_Mutation p.I143V 0.12 deleterious(0) possibly_damaging(0.815) TCGA-BR-4368-01 5 89757254 89757254 G A MBLAC2 Silent p.V190V 0.20 TCGA-BR-4368-01 5 9154620 9154620 G A SEMA5A Silent p.C487C 0.19 TCGA-BR-4368-01 5 94994442 94994442 G A SPATA9 Missense_Mutation p.P217L 0.19 deleterious(0.04) benign(0.018) TCGA-BR-4368-01 5 96328734 96328734 G A LNPEP Missense_Mutation p.V383I 0.19 tolerated(0.12) benign(0.047) TCGA-BR-4368-01 6 101053555 101053555 C T ASCC3 Missense_Mutation p.R1689H 0.12 deleterious(0) probably_damaging(0.985) TCGA-BR-4368-01 6 101127558 101127558 T - ASCC3 Frame_Shift_Del p.N741Ifs*53 0.20 TCGA-BR-4368-01 6 10402804 10402804 T - TFAP2A Frame_Shift_Del p.K268Nfs*5 0.26 TCGA-BR-4368-01 6 105726144 105726144 G - PREP Frame_Shift_Del p.L670Cfs*20 0.22 TCGA-BR-4368-01 6 106634539 106634539 T - ATG5 Frame_Shift_Del p.K235Rfs*4 0.17 TCGA-BR-4368-01 6 110423044 110423044 C T WASF1 Silent p.L423L 0.29 TCGA-BR-4368-01 6 111583579 111583579 T C KIAA1919 Silent p.S49S 0.37 TCGA-BR-4368-01 6 111804150 111804150 G A REV3L 5'UTR 0.42 TCGA-BR-4368-01 6 116966982 116966982 T C ZUFSP Missense_Mutation p.I528M 0.34 tolerated(0.41) benign(0.047) TCGA-BR-4368-01 6 119297156 119297156 G A FAM184A Missense_Mutation p.R837W 0.10 tolerated(0.07) benign(0.001) TCGA-BR-4368-01 6 129663524 129663524 C T LAMA2 Nonsense_Mutation p.R1450* 0.15 TCGA-BR-4368-01 6 132891518 132891518 G T TAAR6 Missense_Mutation p.G20W 0.16 deleterious(0) probably_damaging(0.991) TCGA-BR-4368-01 6 143825243 143825243 A G FUCA2 Missense_Mutation p.F187L 0.16 deleterious(0.02) possibly_damaging(0.696) TCGA-BR-4368-01 6 146720745 146720745 G A GRM1 Missense_Mutation p.R857H 0.16 deleterious(0) probably_damaging(1) TCGA-BR-4368-01 6 151936775 151936775 A - CCDC170 Frame_Shift_Del p.K638Nfs*24 0.16 TCGA-BR-4368-01 6 152777037 152777037 A G SYNE1 Missense_Mutation p.I904T 0.34 benign(0.001) TCGA-BR-4368-01 6 155450812 155450812 C T TIAM2 Missense_Mutation p.P152L 0.27 tolerated_low_confidence(0.11) benign(0.116) TCGA-BR-4368-01 6 155597572 155597572 A - CLDN20 3'UTR 0.43 TCGA-BR-4368-01 6 157522469 157522469 C T ARID1B Nonsense_Mutation p.Q1581* 0.31 TCGA-BR-4368-01 6 158483059 158483059 G A SYNJ2 Silent p.T330T 0.33 TCGA-BR-4368-01 6 160679392 160679392 G A SLC22A2 Missense_Mutation p.S133L 0.18 tolerated(0.06) probably_damaging(0.909) TCGA-BR-4368-01 6 161574397 161574397 C T AGPAT4 Silent p.V215V 0.33 TCGA-BR-4368-01 6 25619953 25619953 T C LRRC16A 3'UTR 0.50 TCGA-BR-4368-01 6 25726410 25726410 G A HIST1H2AA Silent p.L116L 0.17 TCGA-BR-4368-01 6 26018017 26018017 A - HIST1H1A 5'UTR 0.22 TCGA-BR-4368-01 6 26459819 26459819 C T BTN2A1 Missense_Mutation p.R65W 0.07 deleterious(0.01) probably_damaging(1) TCGA-BR-4368-01 6 27107305 27107305 A G HIST1H4I Missense_Mutation p.Y73C 0.12 deleterious(0.02) probably_damaging(0.946) TCGA-BR-4368-01 6 28057166 28057166 G T ZNF165 Missense_Mutation p.S459I 0.32 deleterious(0.04) possibly_damaging(0.588) TCGA-BR-4368-01 6 30043318 30043318 C T RNF39 Silent p.E83E 0.35 TCGA-BR-4368-01 6 3012850 3012850 C T NQO2 Missense_Mutation p.A82V 0.32 deleterious(0.01) benign(0.104) TCGA-BR-4368-01 6 30621048 30621048 T - DHX16 Frame_Shift_Del p.I1033* 0.15 TCGA-BR-4368-01 6 30681463 30681463 T - MDC1 Frame_Shift_Del p.K183Nfs*9 0.11 TCGA-BR-4368-01 6 30919763 30919763 G A DPCR1 Silent p.T1174T 0.17 TCGA-BR-4368-01 6 31132537 31132537 T C POU5F1 Silent p.G308G 0.17 TCGA-BR-4368-01 6 31541350 31541350 G A LTA Silent p.S166S 0.36 TCGA-BR-4368-01 6 3154797 3154797 C T TUBB2A Missense_Mutation p.R213H 0.17 deleterious_low_confidence(0.04) benign(0.013) TCGA-BR-4368-01 6 31627258 31627258 C T C6orf47 Missense_Mutation p.G156D 0.17 deleterious_low_confidence(0.04) possibly_damaging(0.489) TCGA-BR-4368-01 6 31692529 31692529 C - C6orf25 Intron 0.37 TCGA-BR-4368-01 6 31696024 31696024 G A DDAH2 Missense_Mutation p.R173C 0.23 deleterious(0) probably_damaging(0.96) TCGA-BR-4368-01 6 31856457 31856457 G A EHMT2 Silent p.C428C 0.16 TCGA-BR-4368-01 6 31936718 31936718 T C SKIV2L Missense_Mutation p.M1084T 0.17 deleterious(0.01) benign(0.288) TCGA-BR-4368-01 6 31997538 31997538 G A C4B Missense_Mutation p.R1291H 0.10 tolerated(0.61) benign(0.001) TCGA-BR-4368-01 6 32023661 32023661 G A TNXB Missense_Mutation p.R2812C 0.14 probably_damaging(0.953) TCGA-BR-4368-01 6 32119591 32119591 T - PRRT1 Frame_Shift_Del p.K5Sfs*55 0.15 TCGA-BR-4368-01 6 33178996 33178996 G A RING1 Missense_Mutation p.E173K 0.15 tolerated(0.36) unknown(0) TCGA-BR-4368-01 6 33411215 33411215 C T SYNGAP1 Silent p.H962H 0.14 TCGA-BR-4368-01 6 33411218 33411218 T C SYNGAP1 Silent p.H963H 0.14 TCGA-BR-4368-01 6 34208540 34208540 C T HMGA1 5'UTR 0.20 TCGA-BR-4368-01 6 348224 348224 G A DUSP22 Missense_Mutation p.V129M 0.07 tolerated(0.3) benign(0.004) TCGA-BR-4368-01 6 34825969 34825969 G A UHRF1BP1 Silent p.A612A 0.29 TCGA-BR-4368-01 6 34846381 34846381 T - TAF11 Frame_Shift_Del p.I208Sfs*33 0.23 TCGA-BR-4368-01 6 35763018 35763018 G A CLPS Missense_Mutation p.R82C 0.34 deleterious(0.01) probably_damaging(0.976) TCGA-BR-4368-01 6 36823635 36823635 C T PPIL1 Missense_Mutation p.R152H 0.30 deleterious(0.01) benign(0.281) TCGA-BR-4368-01 6 3851117 3851117 C T FAM50B 3'UTR 0.21 TCGA-BR-4368-01 6 38702284 38702284 G A DNAH8 5'UTR 0.15 TCGA-BR-4368-01 6 38941437 38941437 G T DNAH8 Missense_Mutation p.G3959C 0.17 probably_damaging(1) TCGA-BR-4368-01 6 39828752 39828752 C T DAAM2 Missense_Mutation p.P73S 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-BR-4368-01 6 39856508 39856508 A T DAAM2 Missense_Mutation p.Q705L 0.23 deleterious(0.02) benign(0.044) TCGA-BR-4368-01 6 4052975 4052975 A - PRPF4B Frame_Shift_Del p.K780Nfs*13 0.29 TCGA-BR-4368-01 6 41184896 41184896 C T TREML3P RNA 0.19 TCGA-BR-4368-01 6 4130506 4130506 A G C6orf201 3'UTR 0.23 TCGA-BR-4368-01 6 41557560 41557560 C T FOXP4 Missense_Mutation p.R373W 0.18 deleterious(0) possibly_damaging(0.822) TCGA-BR-4368-01 6 41897948 41897948 G A BYSL Silent p.S170S 0.12 TCGA-BR-4368-01 6 42986253 42986253 C A KLHDC3 Missense_Mutation p.P231Q 0.13 tolerated(0.57) benign(0.31) TCGA-BR-4368-01 6 43110015 43110015 G A PTK7 Silent p.T683T 0.12 TCGA-BR-4368-01 6 43152098 43152098 G A CUL9 Missense_Mutation p.R17Q 0.32 tolerated(0.25) benign(0.001) TCGA-BR-4368-01 6 46657163 46657163 G A TDRD6 Missense_Mutation p.R433H 0.34 tolerated(0.67) benign(0.001) TCGA-BR-4368-01 6 46657579 46657579 C T TDRD6 Nonsense_Mutation p.R572* 0.27 TCGA-BR-4368-01 6 4716061 4716061 A - CDYL Frame_Shift_Del p.N18Tfs*13 0.13 TCGA-BR-4368-01 6 51890007 51890007 C T PKHD1 Missense_Mutation p.S1534N 0.10 deleterious(0) possibly_damaging(0.9) TCGA-BR-4368-01 6 52993662 52993662 T C GCM1 Missense_Mutation p.Y218C 0.17 deleterious(0.04) benign(0.01) TCGA-BR-4368-01 6 54208091 54208091 C T TINAG Missense_Mutation p.T231I 0.17 tolerated(1) benign(0.004) TCGA-BR-4368-01 6 55620357 55620357 C T BMP5 Missense_Mutation p.V447I 0.24 deleterious(0.04) probably_damaging(0.948) TCGA-BR-4368-01 6 55939064 55939064 C T COL21A1 Missense_Mutation p.G644D 0.32 tolerated(0.06) probably_damaging(1) TCGA-BR-4368-01 6 7182150 7182150 G A RREB1 Silent p.T2T 0.15 TCGA-BR-4368-01 6 75898209 75898209 G T COL12A1 Missense_Mutation p.S289Y 0.30 probably_damaging(0.999) TCGA-BR-4368-01 6 78172363 78172363 C T HTR1B Missense_Mutation p.R253Q 0.15 tolerated(0.58) benign(0.108) TCGA-BR-4368-01 6 7889011 7889011 G A TXNDC5 Missense_Mutation p.T297I 0.15 tolerated(0.16) benign(0.027) TCGA-BR-4368-01 6 82891642 82891643 - T IBTK Frame_Shift_Ins p.V1227Sfs*4 0.13 TCGA-BR-4368-01 6 83839167 83839167 C T DOPEY1 Missense_Mutation p.P761S 0.18 deleterious(0) probably_damaging(0.999) TCGA-BR-4368-01 6 89871861 89871861 C T PM20D2 Missense_Mutation p.T397M 0.37 deleterious(0.01) benign(0.03) TCGA-BR-4368-01 6 90348451 90348451 G A LYRM2 5'UTR 0.40 TCGA-BR-4368-01 6 90482289 90482289 T C MDN1 Intron 0.21 TCGA-BR-4368-01 6 91246134 91246134 A - MAP3K7 Intron 0.18 TCGA-BR-4368-01 7 100350276 100350276 C T ZAN Missense_Mutation p.P850S 0.14 unknown(0) TCGA-BR-4368-01 7 100452322 100452323 CT - SLC12A9 Frame_Shift_Del p.S89Cfs*39 0.20 TCGA-BR-4368-01 7 100799894 100799894 T G AP1S1 Missense_Mutation p.F8C 0.40 deleterious(0) probably_damaging(0.995) TCGA-BR-4368-01 7 100880766 100880766 T C CLDN15 Missense_Mutation p.T33A 0.08 deleterious(0) possibly_damaging(0.612) TCGA-BR-4368-01 7 102518012 102518012 G A FBXL13 Nonsense_Mutation p.R513* 0.44 TCGA-BR-4368-01 7 104746985 104746985 A - KMT2E Frame_Shift_Del p.K873Nfs*8 0.22 TCGA-BR-4368-01 7 105739652 105739652 G A SYPL1 Missense_Mutation p.A67V 0.19 tolerated(0.36) benign(0.03) TCGA-BR-4368-01 7 106509611 106509611 C T PIK3CG Silent p.T535T 0.30 TCGA-BR-4368-01 7 106519994 106519994 A - PIK3CG Frame_Shift_Del p.K809Nfs*68 0.15 TCGA-BR-4368-01 7 106871061 106871061 T C COG5 Missense_Mutation p.R754G 0.09 deleterious(0) probably_damaging(0.991) TCGA-BR-4368-01 7 1098028 1098028 C T GPR146 Missense_Mutation p.P293S 0.12 deleterious(0) probably_damaging(1) TCGA-BR-4368-01 7 110763732 110763732 A G LRRN3 Missense_Mutation p.S302G 0.35 tolerated(0.15) benign(0) TCGA-BR-4368-01 7 110764048 110764048 T A LRRN3 Missense_Mutation p.V407D 0.29 deleterious(0) probably_damaging(0.914) TCGA-BR-4368-01 7 120935811 120935811 A C CPED1 3'UTR 0.32 TCGA-BR-4368-01 7 121653374 121653374 G A PTPRZ1 Missense_Mutation p.G1425D 0.37 tolerated_low_confidence(1) benign(0.001) TCGA-BR-4368-01 7 123332485 123332485 T - WASL Frame_Shift_Del p.V422Wfs*17 0.32 TCGA-BR-4368-01 7 127013401 127013401 A G ZNF800 Silent p.L663L 0.39 TCGA-BR-4368-01 7 127014560 127014560 C T ZNF800 Missense_Mutation p.R277H 0.32 deleterious(0.04) benign(0.007) TCGA-BR-4368-01 7 127236057 127236057 G A FSCN3 Missense_Mutation p.D281N 0.40 tolerated(0.4) benign(0.287) TCGA-BR-4368-01 7 128356976 128356976 C A FAM71F1 Missense_Mutation p.A120D 0.36 deleterious(0) probably_damaging(0.999) TCGA-BR-4368-01 7 129062714 129062714 C T AHCYL2 Nonsense_Mutation p.R499* 0.15 TCGA-BR-4368-01 7 129946724 129946724 A G CPA4 Missense_Mutation p.Y230C 0.07 deleterious(0) probably_damaging(0.989) TCGA-BR-4368-01 7 130021652 130021652 G A CPA1 Missense_Mutation p.R110Q 0.27 tolerated(0.57) benign(0.001) TCGA-BR-4368-01 7 130025028 130025028 G A CPA1 Missense_Mutation p.G277S 0.17 deleterious(0) probably_damaging(0.999) TCGA-BR-4368-01 7 131172554 131172554 C A MKLN1 3'UTR 0.53 TCGA-BR-4368-01 7 132174136 132174136 C A PLXNA4 Missense_Mutation p.R429M 0.15 tolerated(0.1) benign(0.178) TCGA-BR-4368-01 7 132754985 132754985 G A CHCHD3 Missense_Mutation p.S29L 0.12 tolerated(0.08) benign(0.034) TCGA-BR-4368-01 7 134891882 134891882 A G WDR91 Missense_Mutation p.L195P 0.11 deleterious(0) possibly_damaging(0.882) TCGA-BR-4368-01 7 134925394 134925394 C T STRA8 Nonsense_Mutation p.R62* 0.17 TCGA-BR-4368-01 7 135272360 135272360 G A NUP205 Missense_Mutation p.R419Q 0.12 deleterious(0.02) probably_damaging(1) TCGA-BR-4368-01 7 135310094 135310094 A G NUP205 Silent p.E1554E 0.07 TCGA-BR-4368-01 7 138758692 138758694 AGA - ZC3HAV1 In_Frame_Del p.S594del 0.20 TCGA-BR-4368-01 7 141490049 141490049 G A TAS2R5 5'UTR 0.43 TCGA-BR-4368-01 7 142638384 142638384 T C KEL Silent p.A718A 0.31 TCGA-BR-4368-01 7 142643397 142643397 C T KEL Missense_Mutation p.R404H 0.17 tolerated(0.42) benign(0.003) TCGA-BR-4368-01 7 150174435 150174435 A - GIMAP8 Frame_Shift_Del p.D525Tfs*46 0.33 TCGA-BR-4368-01 7 150935717 150935717 G A CHPF2 Missense_Mutation p.A757T 0.26 tolerated(0.42) benign(0.048) TCGA-BR-4368-01 7 151372719 151372719 G A PRKAG2 Silent p.S157S 0.19 TCGA-BR-4368-01 7 151845959 151845959 T - KMT2C Frame_Shift_Del p.K4351Nfs*5 0.40 TCGA-BR-4368-01 7 1535894 1535894 A T INTS1 Missense_Mutation p.F537I 0.08 deleterious(0.03) benign(0.035) TCGA-BR-4368-01 7 157959937 157959937 G A PTPRN2 Missense_Mutation p.T199M 0.15 deleterious(0.01) possibly_damaging(0.572) TCGA-BR-4368-01 7 17379837 17379837 G T AHR Missense_Mutation p.Q796H 0.35 tolerated_low_confidence(0.11) benign(0.031) TCGA-BR-4368-01 7 19184632 19184632 G A FERD3L Silent p.N118N 0.16 TCGA-BR-4368-01 7 19738156 19738156 G A TWISTNB Missense_Mutation p.A267V 0.03 tolerated(1) benign(0) TCGA-BR-4368-01 7 20824665 20824665 C - SP8 Frame_Shift_Del p.L258Sfs*19 0.30 TCGA-BR-4368-01 7 21639564 21639564 T - DNAH11 Frame_Shift_Del p.Q945Kfs*4 0.21 TCGA-BR-4368-01 7 2419863 2419863 C T EIF3B 3'UTR 0.27 TCGA-BR-4368-01 7 2473129 2473129 C T CHST12 Silent p.P285P 0.16 TCGA-BR-4368-01 7 25163211 25163211 C T CYCS 3'UTR 0.09 TCGA-BR-4368-01 7 2854018 2854018 C T GNA12 Intron 0.16 TCGA-BR-4368-01 7 29605934 29605934 G T PRR15 5'UTR 0.30 TCGA-BR-4368-01 7 2962768 2962768 G A CARD11 Silent p.L714L 0.28 TCGA-BR-4368-01 7 30491514 30491514 C T NOD1 Missense_Mutation p.G507R 0.16 tolerated(0.5) benign(0.246) TCGA-BR-4368-01 7 36489380 36489380 G A ANLN Missense_Mutation p.R1062Q 0.38 deleterious(0) probably_damaging(0.989) TCGA-BR-4368-01 7 36677512 36677512 G A AOAH Missense_Mutation p.T132I 0.21 tolerated(0.09) benign(0.01) TCGA-BR-4368-01 7 41729462 41729462 C T INHBA Missense_Mutation p.S356N 0.41 tolerated(0.11) benign(0.157) TCGA-BR-4368-01 7 43906548 43906548 C T MRPS24 Missense_Mutation p.R85Q 0.19 tolerated(0.07) possibly_damaging(0.563) TCGA-BR-4368-01 7 44152488 44152488 A G AEBP1 Missense_Mutation p.K850R 0.16 tolerated(0.06) benign(0.348) TCGA-BR-4368-01 7 4917262 4917262 G A RADIL Missense_Mutation p.A170V 0.15 deleterious(0.03) benign(0.017) TCGA-BR-4368-01 7 50022992 50022992 A C ZPBP Missense_Mutation p.F303V 0.38 tolerated(0.32) benign(0.253) TCGA-BR-4368-01 7 50514362 50514362 A G FIGNL1 Silent p.G208G 0.38 TCGA-BR-4368-01 7 53104115 53104115 G A POM121L12 Missense_Mutation p.A251T 0.30 tolerated(0.72) benign(0) TCGA-BR-4368-01 7 5338627 5338627 A G SLC29A4 Silent p.P297P 0.33 TCGA-BR-4368-01 7 57528978 57528978 T C ZNF716 Missense_Mutation p.C271R 0.31 deleterious(0.01) probably_damaging(1) TCGA-BR-4368-01 7 5925848 5925848 G A OCM 3'UTR 0.27 TCGA-BR-4368-01 7 6205435 6205435 C T CYTH3 Missense_Mutation p.R277H 0.18 deleterious(0) probably_damaging(0.986) TCGA-BR-4368-01 7 65220825 65220825 T - SNORA22 3'Flank 0.08 TCGA-BR-4368-01 7 72412589 72412589 C T POM121 Missense_Mutation p.T421M 0.28 deleterious(0.02) benign(0.221) TCGA-BR-4368-01 7 72857062 72857062 G A BAZ1B Missense_Mutation p.P1363S 0.27 deleterious(0) probably_damaging(1) TCGA-BR-4368-01 7 73011248 73011248 C T MLXIPL Missense_Mutation p.A540T 0.37 tolerated(0.25) benign(0.003) TCGA-BR-4368-01 7 74114939 74114939 T - GTF2I Frame_Shift_Del p.L189* 0.30 TCGA-BR-4368-01 7 82390038 82390038 T - PCLO Frame_Shift_Del p.T5069Qfs*20 0.24 TCGA-BR-4368-01 7 82764703 82764703 C T PCLO Silent p.K721K 0.43 TCGA-BR-4368-01 7 87038559 87038559 A G ABCB4 Missense_Mutation p.L1025P 0.19 tolerated(0.13) benign(0.323) TCGA-BR-4368-01 7 92129019 92129019 T C PEX1 Missense_Mutation p.K906R 0.13 deleterious(0.01) benign(0.108) TCGA-BR-4368-01 7 92355017 92355017 T A CDK6 Missense_Mutation p.T154S 0.10 tolerated(0.27) benign(0.239) TCGA-BR-4368-01 7 92732375 92732375 T C SAMD9 Silent p.L1012L 0.12 TCGA-BR-4368-01 7 92761061 92761061 T - SAMD9L Frame_Shift_Del p.K1408Nfs*10 0.30 TCGA-BR-4368-01 7 97946560 97946560 C T BAIAP2L1 Missense_Mutation p.A153T 0.16 deleterious(0.02) possibly_damaging(0.512) TCGA-BR-4368-01 7 98957328 98957328 C T ARPC1A Missense_Mutation p.T317M 0.22 deleterious(0.01) benign(0.07) TCGA-BR-4368-01 7 99914757 99914757 G A SPDYE3 Missense_Mutation p.R442H 0.11 deleterious(0.03) probably_damaging(0.98) TCGA-BR-4368-01 7 99918604 99918604 G A SPDYE3 3'UTR 0.17 TCGA-BR-4368-01 8 102589722 102589722 G A GRHL2 Silent p.T326T 0.06 TCGA-BR-4368-01 8 10389018 10389018 C T PRSS55 Silent p.R187R 0.18 TCGA-BR-4368-01 8 105001565 105001565 G A RIMS2 Missense_Mutation p.R987H 0.22 deleterious_low_confidence(0.04) possibly_damaging(0.897) TCGA-BR-4368-01 8 105361024 105361024 A T DCSTAMP Missense_Mutation p.I82F 0.20 tolerated(0.19) benign(0.211) TCGA-BR-4368-01 8 105509656 105509656 C A LRP12 Missense_Mutation p.C375F 0.18 deleterious(0) probably_damaging(0.997) TCGA-BR-4368-01 8 105509809 105509809 T A LRP12 Missense_Mutation p.N324I 0.17 tolerated(0.07) possibly_damaging(0.751) TCGA-BR-4368-01 8 106815407 106815407 C T ZFPM2 Missense_Mutation p.P1033S 0.14 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-BR-4368-01 8 10892719 10892719 G A XKR6 Intron 0.16 TCGA-BR-4368-01 8 11188883 11188883 C T SLC35G5 Missense_Mutation p.R90C 0.14 deleterious(0.01) benign(0.01) TCGA-BR-4368-01 8 116599323 116599323 C - TRPS1 Frame_Shift_Del p.A869Rfs*45 0.22 TCGA-BR-4368-01 8 116599521 116599521 G A TRPS1 Missense_Mutation p.R803C 0.17 deleterious_low_confidence(0) probably_damaging(0.927) TCGA-BR-4368-01 8 121160125 121160126 - T COL14A1 Frame_Shift_Ins p.L17Ffs*23 0.17 TCGA-BR-4368-01 8 121466147 121466147 T C MTBP Splice_Site p.X162_splice 0.18 TCGA-BR-4368-01 8 124799557 124799557 G A FAM91A1 Missense_Mutation p.A379T 0.21 deleterious(0) probably_damaging(0.985) TCGA-BR-4368-01 8 125740157 125740157 C A MTSS1 Missense_Mutation p.G14C 0.10 deleterious(0.02) probably_damaging(0.969) TCGA-BR-4368-01 8 128753073 128753073 A - MYC Frame_Shift_Del p.A414Pfs*29 0.11 TCGA-BR-4368-01 8 131072914 131072914 C T ASAP1 Missense_Mutation p.A1035T 0.16 tolerated(0.54) benign(0.002) TCGA-BR-4368-01 8 131370319 131370319 A G ASAP1 Missense_Mutation p.S44P 0.24 deleterious(0) benign(0.054) TCGA-BR-4368-01 8 133144483 133144483 T C KCNQ3 Missense_Mutation p.T610A 0.18 tolerated(0.68) benign(0.006) TCGA-BR-4368-01 8 133492588 133492588 G A KCNQ3 Silent p.D64D 0.22 TCGA-BR-4368-01 8 139189644 139189644 G A FAM135B Missense_Mutation p.A350V 0.14 deleterious(0) probably_damaging(0.998) TCGA-BR-4368-01 8 139661990 139661990 G - COL22A1 Frame_Shift_Del p.P1122Qfs*42 0.11 TCGA-BR-4368-01 8 143747298 143747298 C T JRK RNA 0.17 TCGA-BR-4368-01 8 144239712 144239712 C - LY6H Frame_Shift_Del p.L148Sfs*24 0.19 TCGA-BR-4368-01 8 144457822 144457822 G A RHPN1 Missense_Mutation p.A54T 0.19 deleterious(0) probably_damaging(0.949) TCGA-BR-4368-01 8 144804319 144804319 G - MAPK15 Frame_Shift_Del p.G513Vfs*? 0.16 TCGA-BR-4368-01 8 144874253 144874253 C A SCRIB Missense_Mutation p.R1522M 0.24 possibly_damaging(0.718) TCGA-BR-4368-01 8 144944997 144944997 C T EPPK1 Missense_Mutation p.A809T 0.18 benign(0.01) TCGA-BR-4368-01 8 144945237 144945237 C T EPPK1 Missense_Mutation p.V729I 0.13 benign(0.005) TCGA-BR-4368-01 8 145109542 145109542 G - OPLAH Frame_Shift_Del p.H870Tfs*28 0.23 TCGA-BR-4368-01 8 145624413 145624413 C T CPSF1 Missense_Mutation p.E495K 0.18 tolerated(0.05) benign(0.234) TCGA-BR-4368-01 8 18079720 18079720 T - NAT1 Frame_Shift_Del p.F118Lfs*5 0.14 TCGA-BR-4368-01 8 2044088 2044088 C A MYOM2 Silent p.T709T 0.18 TCGA-BR-4368-01 8 21608373 21608373 C T GFRA2 Missense_Mutation p.C174Y 0.12 deleterious(0) possibly_damaging(0.871) TCGA-BR-4368-01 8 21839264 21839264 A G XPO7 Missense_Mutation p.Y327C 0.18 deleterious(0.03) probably_damaging(0.971) TCGA-BR-4368-01 8 22051620 22051620 C T BMP1 Silent p.S410S 0.24 TCGA-BR-4368-01 8 22052262 22052262 A G BMP1 Missense_Mutation p.Y490C 0.21 deleterious(0) probably_damaging(0.993) TCGA-BR-4368-01 8 22273344 22273344 G - SLC39A14 Frame_Shift_Del p.V273* 0.13 TCGA-BR-4368-01 8 22426753 22426753 G - SORBS3 Frame_Shift_Del p.D468Tfs*16 0.19 TCGA-BR-4368-01 8 22488003 22488003 C T BIN3 Silent p.T83T 0.15 TCGA-BR-4368-01 8 22862133 22862133 C T RHOBTB2 Silent p.C84C 0.21 TCGA-BR-4368-01 8 22865598 22865598 C G RHOBTB2 Missense_Mutation p.P554A 0.17 tolerated(0.2) benign(0.014) TCGA-BR-4368-01 8 23191025 23191025 G A LOXL2 Silent p.P285P 0.15 TCGA-BR-4368-01 8 23429231 23429231 G A SLC25A37 Missense_Mutation p.G294S 0.10 deleterious(0) probably_damaging(1) TCGA-BR-4368-01 8 24321458 24321458 G A ADAM7 Silent p.R99R 0.19 TCGA-BR-4368-01 8 25287444 25287445 CT - KCTD9 Frame_Shift_Del p.G367Vfs*9 0.14 TCGA-BR-4368-01 8 25708244 25708244 C T EBF2 Missense_Mutation p.S521N 0.19 deleterious_low_confidence(0.04) benign(0.009) TCGA-BR-4368-01 8 27145379 27145379 G A TRIM35 Silent p.H390H 0.16 TCGA-BR-4368-01 8 27507225 27507225 C T SCARA3 Missense_Mutation p.S5L 0.17 deleterious_low_confidence(0.01) probably_damaging(0.96) TCGA-BR-4368-01 8 27507232 27507232 C T SCARA3 Silent p.G7G 0.17 TCGA-BR-4368-01 8 2796120 2796120 C A CSMD1 Missense_Mutation p.C3561F 0.22 probably_damaging(0.996) TCGA-BR-4368-01 8 2857552 2857552 G A CSMD1 Missense_Mutation p.R2711W 0.19 probably_damaging(1) TCGA-BR-4368-01 8 30703516 30703516 T - TEX15 Frame_Shift_Del p.A1007Lfs*12 0.18 TCGA-BR-4368-01 8 3216699 3216699 C A CSMD1 Missense_Mutation p.W1093C 0.09 probably_damaging(1) TCGA-BR-4368-01 8 33354189 33354189 T C MAK16 Missense_Mutation p.L190P 0.19 deleterious(0) probably_damaging(0.992) TCGA-BR-4368-01 8 35624428 35624428 G A UNC5D Silent p.P774P 0.21 TCGA-BR-4368-01 8 37756850 37756850 C - RAB11FIP1 Frame_Shift_Del p.G37Afs*8 0.27 TCGA-BR-4368-01 8 37986420 37986420 C A ASH2L Missense_Mutation p.P493H 0.18 deleterious(0) probably_damaging(0.974) TCGA-BR-4368-01 8 38027335 38027335 G A LSM1 Silent p.V72V 0.05 TCGA-BR-4368-01 8 42587571 42587571 A - CHRNB3 Frame_Shift_Del p.K376Rfs*13 0.17 TCGA-BR-4368-01 8 42611455 42611455 G A CHRNA6 Missense_Mutation p.T296I 0.19 deleterious(0) probably_damaging(1) TCGA-BR-4368-01 8 48878843 48878843 C T MCM4 Missense_Mutation p.A310V 0.16 tolerated(0.59) benign(0.066) TCGA-BR-4368-01 8 49831507 49831507 A - SNAI2 Frame_Shift_Del p.F222Lfs*7 0.19 TCGA-BR-4368-01 8 52321490 52321490 G A PXDNL Silent p.N898N 0.18 TCGA-BR-4368-01 8 53079492 53079492 C T ST18 Missense_Mutation p.G375D 0.17 deleterious(0) probably_damaging(1) TCGA-BR-4368-01 8 55533959 55533959 G A RP1 Missense_Mutation p.A145T 0.15 tolerated(0.39) benign(0.017) TCGA-BR-4368-01 8 55534032 55534032 C T RP1 Missense_Mutation p.A169V 0.13 tolerated(0.68) benign(0.004) TCGA-BR-4368-01 8 55539295 55539295 T - RP1 Frame_Shift_Del p.S953Qfs*12 0.14 TCGA-BR-4368-01 8 56698411 56698411 A G TGS1 Silent p.P100P 0.16 TCGA-BR-4368-01 8 57079754 57079754 T - PLAG1 Frame_Shift_Del p.K184Sfs*45 0.20 TCGA-BR-4368-01 8 6372237 6372237 G A ANGPT2 Silent p.G331G 0.16 TCGA-BR-4368-01 8 65528501 65528501 T C CYP7B1 Silent p.K199K 0.18 TCGA-BR-4368-01 8 68956736 68956736 G A PREX2 Missense_Mutation p.S285N 0.08 tolerated(0.11) benign(0.005) TCGA-BR-4368-01 8 70514026 70514026 T - SULF1 Frame_Shift_Del p.F343Lfs*7 0.16 TCGA-BR-4368-01 8 70541824 70541824 C T SULF1 Missense_Mutation p.R732W 0.13 deleterious(0) probably_damaging(0.931) TCGA-BR-4368-01 8 71646272 71646272 G A XKR9 Nonsense_Mutation p.W245* 0.10 TCGA-BR-4368-01 8 75737271 75737271 A - PI15 Intron 0.30 TCGA-BR-4368-01 8 75898440 75898440 G A CRISPLD1 Missense_Mutation p.R73Q 0.13 deleterious(0) probably_damaging(1) TCGA-BR-4368-01 8 7718228 7718228 T - SPAG11A Frame_Shift_Del p.F94Sfs*63 0.12 TCGA-BR-4368-01 8 77766151 77766151 A G ZFHX4 Missense_Mutation p.K2332E 0.16 probably_damaging(0.97) TCGA-BR-4368-01 8 81733778 81733778 T - ZNF704 Frame_Shift_Del p.M18Cfs*15 0.19 TCGA-BR-4368-01 8 87076335 87076335 C A PSKH2 Missense_Mutation p.K237N 0.10 deleterious(0.01) benign(0.183) TCGA-BR-4368-01 8 91013752 91013752 T C DECR1 Missense_Mutation p.L11P 0.09 tolerated_low_confidence(0.23) benign(0.029) TCGA-BR-4368-01 8 91031391 91031391 A T DECR1 Silent p.G136G 0.15 TCGA-BR-4368-01 8 93029539 93029539 C T RUNX1T1 Silent p.T58T 0.12 TCGA-BR-4368-01 8 95188800 95188800 G A CDH17 Silent p.Y131Y 0.20 TCGA-BR-4368-01 8 95531575 95531575 A G KIAA1429 Silent p.G717G 0.06 TCGA-BR-4368-01 8 95888348 95888348 C T INTS8 Missense_Mutation p.A912V 0.14 deleterious(0) possibly_damaging(0.533) TCGA-BR-4368-01 8 95906149 95906149 C T CCNE2 Silent p.E45E 0.13 TCGA-BR-4368-01 8 96044227 96044227 C T NDUFAF6 Missense_Mutation p.R68W 0.19 deleterious(0.02) probably_damaging(0.935) TCGA-BR-4368-01 8 99030335 99030335 C T MATN2 Missense_Mutation p.R604C 0.11 deleterious(0.01) possibly_damaging(0.832) TCGA-BR-4368-01 8 99961765 99961765 G A OSR2 Silent p.T195T 0.18 TCGA-BR-4368-01 9 101706316 101706316 G A COL15A1 5'UTR 0.15 TCGA-BR-4368-01 9 101778282 101778282 G A COL15A1 Missense_Mutation p.A510T 0.14 tolerated_low_confidence(0.24) benign(0.018) TCGA-BR-4368-01 9 103008902 103008902 C T INVS Missense_Mutation p.T304M 0.20 deleterious(0) probably_damaging(0.995) TCGA-BR-4368-01 9 103111633 103111633 T - TEX10 Frame_Shift_Del p.R5Efs*10 0.27 TCGA-BR-4368-01 9 103340555 103340555 G A MURC Missense_Mutation p.V44M 0.30 tolerated(0.12) benign(0.446) TCGA-BR-4368-01 9 104324640 104324640 G A RNF20 Missense_Mutation p.R955H 0.19 deleterious(0) probably_damaging(0.997) TCGA-BR-4368-01 9 104449155 104449155 T C GRIN3A Missense_Mutation p.T343A 0.26 tolerated(0.77) benign(0.001) TCGA-BR-4368-01 9 106889604 106889604 A - SMC2 Frame_Shift_Del p.E880Rfs*2 0.12 TCGA-BR-4368-01 9 108151463 108151463 C T SLC44A1 3'UTR 0.27 TCGA-BR-4368-01 9 116029676 116029676 C A CDC26 Missense_Mutation p.S42I 0.14 tolerated(0.17) possibly_damaging(0.54) TCGA-BR-4368-01 9 116989 116989 G A FOXD4 Silent p.C377C 0.20 TCGA-BR-4368-01 9 120474910 120474910 T C TLR4 Silent p.P168P 0.20 TCGA-BR-4368-01 9 121993 121993 T C CBWD1 Missense_Mutation p.D350G 0.19 tolerated(0.05) benign(0.098) TCGA-BR-4368-01 9 123220813 123220813 C T CDK5RAP2 Missense_Mutation p.A764T 0.24 tolerated(0.62) benign(0) TCGA-BR-4368-01 9 123723809 123723809 A G C5 Silent p.N1513N 0.18 TCGA-BR-4368-01 9 125681387 125681387 G A ZBTB26 Missense_Mutation p.P276L 0.20 deleterious(0.01) probably_damaging(0.93) TCGA-BR-4368-01 9 127733710 127733710 C T SCAI Missense_Mutation p.R561H 0.16 deleterious(0) probably_damaging(0.986) TCGA-BR-4368-01 9 128001567 128001567 C - HSPA5 Frame_Shift_Del p.E217Rfs*76 0.22 TCGA-BR-4368-01 9 129458768 129458768 G - LMX1B 3'UTR 0.27 TCGA-BR-4368-01 9 130486410 130486410 A G TTC16 Missense_Mutation p.Y295C 0.17 deleterious(0) probably_damaging(0.987) TCGA-BR-4368-01 9 130884666 130884666 C T PTGES2 Missense_Mutation p.G327D 0.19 deleterious(0) probably_damaging(1) TCGA-BR-4368-01 9 131022375 131022375 G A GOLGA2 Silent p.L591L 0.19 TCGA-BR-4368-01 9 131495728 131495728 C T ZER1 Silent p.R740R 0.21 TCGA-BR-4368-01 9 131604977 131604977 C T CCBL1 Missense_Mutation p.A53T 0.24 deleterious(0.03) possibly_damaging(0.762) TCGA-BR-4368-01 9 131832626 131832626 G A FAM73B Missense_Mutation p.R559H 0.16 deleterious(0) probably_damaging(0.998) TCGA-BR-4368-01 9 131898802 131898802 G A PPP2R4 Missense_Mutation p.G205S 0.25 deleterious(0) probably_damaging(0.968) TCGA-BR-4368-01 9 134350640 134350640 C - PRRC2B Frame_Shift_Del p.M1044* 0.12 TCGA-BR-4368-01 9 134455650 134455650 G A RAPGEF1 Missense_Mutation p.A1046V 0.24 tolerated(0.63) benign(0.002) TCGA-BR-4368-01 9 135176111 135176111 T C SETX Missense_Mutation p.I1818M 0.18 tolerated(0.05) benign(0.052) TCGA-BR-4368-01 9 135978272 135978272 C T RALGDS Missense_Mutation p.A603T 0.22 deleterious(0) unknown(0) TCGA-BR-4368-01 9 136319630 136319630 G T ADAMTS13 Missense_Mutation p.Q1046H 0.13 tolerated(0.1) benign(0.02) TCGA-BR-4368-01 9 137023052 137023054 CAT - WDR5 In_Frame_Del p.I316del 0.24 TCGA-BR-4368-01 9 138667192 138667192 C T KCNT1 Silent p.I760I 0.25 TCGA-BR-4368-01 9 139008560 139008560 T C C9orf69 Missense_Mutation p.S63G 0.16 tolerated(0.24) probably_damaging(0.955) TCGA-BR-4368-01 9 139275256 139275257 CT - SNAPC4 Frame_Shift_Del p.R812Efs*227 0.46 TCGA-BR-4368-01 9 139639195 139639195 T C LCN6 Splice_Site p.X138_splice 0.18 TCGA-BR-4368-01 9 139694927 139694927 G A CCDC183 Silent p.L175L 0.21 TCGA-BR-4368-01 9 139905558 139905558 C A ABCA2 Splice_Site p.X1975_splice 0.24 TCGA-BR-4368-01 9 140880954 140880954 T C CACNA1B Missense_Mutation p.I620T 0.31 deleterious(0.05) benign(0.154) TCGA-BR-4368-01 9 140968005 140968005 C T CACNA1B Silent p.R1580R 0.17 TCGA-BR-4368-01 9 16436812 16436812 G T BNC2 Nonsense_Mutation p.Y460* 0.27 TCGA-BR-4368-01 9 21994370 21994370 G A RP11-149I2.4 5'Flank 0.22 TCGA-BR-4368-01 9 2718573 2718573 G A KCNV2 Silent p.A278A 0.23 TCGA-BR-4368-01 9 27948946 27948946 T - LINGO2 Frame_Shift_Del p.N575Tfs*21 0.18 TCGA-BR-4368-01 9 33351731 33351731 G A NFX1 Silent p.P866P 0.21 TCGA-BR-4368-01 9 38395863 38395863 T C ALDH1B1 Missense_Mutation p.F40L 0.12 tolerated(0.21) benign(0.006) TCGA-BR-4368-01 9 5054649 5054649 G A JAK2 Missense_Mutation p.R234H 0.19 tolerated(0.11) benign(0.006) TCGA-BR-4368-01 9 5467898 5467898 T C CD274 3'UTR 0.24 TCGA-BR-4368-01 9 6553433 6553433 C A GLDC Nonsense_Mutation p.G798* 0.25 TCGA-BR-4368-01 9 7015923 7015923 G C KDM4C Missense_Mutation p.W751C 0.14 deleterious(0) possibly_damaging(0.789) TCGA-BR-4368-01 9 73213556 73213556 G A TRPM3 Nonsense_Mutation p.Q931* 0.22 TCGA-BR-4368-01 9 75543858 75543858 C T ALDH1A1 Missense_Mutation p.R131H 0.19 deleterious(0.02) benign(0.027) TCGA-BR-4368-01 9 77418752 77418752 C T TRPM6 Silent p.L563L 0.14 TCGA-BR-4368-01 9 80537249 80537250 CT - GNAQ Frame_Shift_Del p.S50Wfs*19 0.23 TCGA-BR-4368-01 9 84225192 84225192 G - TLE1 Frame_Shift_Del p.P425Lfs*3 0.20 TCGA-BR-4368-01 9 85677651 85677651 C T RASEF Silent p.P44P 0.50 TCGA-BR-4368-01 9 88193897 88193897 C A AGTPBP1 Nonsense_Mutation p.G1054* 0.17 TCGA-BR-4368-01 9 88694210 88694210 C T GOLM1 Missense_Mutation p.R9H 0.27 deleterious(0) probably_damaging(0.923) TCGA-BR-4368-01 9 88937823 88937823 A - ZCCHC6 Frame_Shift_Del p.Y948Mfs*16 0.12 TCGA-BR-4368-01 9 95738612 95738612 G A FGD3 Missense_Mutation p.G25D 0.25 tolerated_low_confidence(0.24) benign(0.007) TCGA-BR-4368-01 9 95840243 95840243 C T SUSD3 Silent p.C131C 0.20 TCGA-BR-4368-01 9 96846852 96846852 C T PTPDC1 Missense_Mutation p.R14C 0.24 tolerated_low_confidence(0.07) benign(0.02) TCGA-BR-4368-01 9 99113363 99113363 C T SLC35D2 Intron 0.12 TCGA-BR-4368-01 9 99697697 99697697 G A NUTM2G Silent p.T267T 0.22 TCGA-BR-4368-01 X 100617587 100617587 T - BTK Frame_Shift_Del p.N161Mfs*15 0.29 TCGA-BR-4368-01 X 102005017 102005017 G A BHLHB9 Missense_Mutation p.G365D 0.17 deleterious(0) probably_damaging(0.999) TCGA-BR-4368-01 X 102979004 102979004 A G GLRA4 Splice_Site p.X165_splice 0.17 TCGA-BR-4368-01 X 103495262 103495262 G A ESX1 Missense_Mutation p.R290C 0.10 deleterious_low_confidence(0.01) unknown(0) TCGA-BR-4368-01 X 110654335 110654335 A G DCX 5'UTR 0.18 TCGA-BR-4368-01 X 111914251 111914251 G A LHFPL1 Missense_Mutation p.A123V 0.23 tolerated(0.56) benign(0.107) TCGA-BR-4368-01 X 112058802 112058802 T G AMOT Missense_Mutation p.Q392H 0.22 unknown(0) TCGA-BR-4368-01 X 115582757 115582757 G A SLC6A14 Missense_Mutation p.A361T 0.16 deleterious(0) probably_damaging(1) TCGA-BR-4368-01 X 117529236 117529236 C T WDR44 Nonsense_Mutation p.Q328* 0.27 TCGA-BR-4368-01 X 11783954 11783954 G A MSL3 Intron 0.24 TCGA-BR-4368-01 X 119387551 119387551 G C ZBTB33 Missense_Mutation p.R94T 0.21 deleterious(0) probably_damaging(0.997) TCGA-BR-4368-01 X 123785941 123785941 G T TENM1 Missense_Mutation p.L468M 0.19 deleterious(0) probably_damaging(0.92) TCGA-BR-4368-01 X 125298898 125298898 C T DCAF12L2 Missense_Mutation p.R337H 0.20 tolerated(0.56) benign(0.001) TCGA-BR-4368-01 X 130419221 130419221 C T IGSF1 Missense_Mutation p.R200H 0.18 tolerated(0.48) benign(0.031) TCGA-BR-4368-01 X 132887715 132887715 C T GPC3 Missense_Mutation p.G276S 0.20 tolerated(0.05) possibly_damaging(0.836) TCGA-BR-4368-01 X 135313852 135313852 C T MAP7D3 Missense_Mutation p.A422T 0.25 tolerated(0.41) benign(0) TCGA-BR-4368-01 X 135593604 135593604 A - HTATSF1 Frame_Shift_Del p.N568Mfs*25 0.16 TCGA-BR-4368-01 X 135750064 135750065 GA - ARHGEF6 3'UTR 0.34 TCGA-BR-4368-01 X 1428568 1428568 T C CSF2RA 3'UTR 0.14 TCGA-BR-4368-01 X 144904851 144904851 G A SLITRK2 Missense_Mutation p.R303Q 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-BR-4368-01 X 150348463 150348463 C T GPR50 Silent p.Y136Y 0.22 TCGA-BR-4368-01 X 150911109 150911109 G A CNGA2 Missense_Mutation p.R195H 0.17 tolerated(0.33) benign(0.061) TCGA-BR-4368-01 X 152845658 152845658 G A ATP2B3 Missense_Mutation p.G1189S 0.12 tolerated_low_confidence(0.09) possibly_damaging(0.901) TCGA-BR-4368-01 X 153046961 153046961 C T SRPK3 Silent p.G64G 0.13 TCGA-BR-4368-01 X 153048550 153048550 C T SRPK3 Missense_Mutation p.A242V 0.29 tolerated(0.1) benign(0.113) TCGA-BR-4368-01 X 153577241 153577241 G A FLNA Silent p.S2640S 0.26 TCGA-BR-4368-01 X 154255310 154255310 C T FUNDC2 Nonsense_Mutation p.R33* 0.19 TCGA-BR-4368-01 X 155119136 155119136 A G VAMP7 Missense_Mutation p.I3V 0.06 deleterious(0) possibly_damaging(0.76) TCGA-BR-4368-01 X 16685651 16685651 C T CTPS2 Missense_Mutation p.A428T 0.19 tolerated(1) benign(0.001) TCGA-BR-4368-01 X 18525131 18525131 C T CDKL5 5'UTR 0.20 TCGA-BR-4368-01 X 20153899 20153899 C T EIF1AX Missense_Mutation p.G54D 0.15 deleterious(0) possibly_damaging(0.821) TCGA-BR-4368-01 X 216115 216115 G A PLCXD1 3'UTR 0.19 TCGA-BR-4368-01 X 24732689 24732689 G A POLA1 Missense_Mutation p.R116H 0.29 tolerated(0.29) benign(0.001) TCGA-BR-4368-01 X 27998141 27998141 A G DCAF8L1 Silent p.N437N 0.06 TCGA-BR-4368-01 X 27998625 27998625 C T DCAF8L1 Missense_Mutation p.C276Y 0.14 tolerated(0.09) benign(0.024) TCGA-BR-4368-01 X 27998761 27998761 C T DCAF8L1 Missense_Mutation p.V231I 0.25 tolerated(0.05) benign(0.019) TCGA-BR-4368-01 X 299579 299579 G A PPP2R3B Silent p.F468F 0.12 TCGA-BR-4368-01 X 3021856 3021856 C T ARSF Nonsense_Mutation p.R386* 0.22 TCGA-BR-4368-01 X 33146282 33146282 T C DMD Intron 0.20 TCGA-BR-4368-01 X 33357505 33357505 C T DMD 5'UTR 0.28 TCGA-BR-4368-01 X 3592808 3592808 C A PRKX Splice_Site p.X56_splice 0.26 TCGA-BR-4368-01 X 41012336 41012336 T C USP9X Splice_Site p.X633_splice 0.16 TCGA-BR-4368-01 X 48054732 48054732 C T SSX5 Missense_Mutation p.M21I 0.20 tolerated_low_confidence(1) benign(0) TCGA-BR-4368-01 X 48923062 48923062 G - CCDC120 Frame_Shift_Del p.S256Afs*19 0.23 TCGA-BR-4368-01 X 50053728 50053728 A G CCNB3 Silent p.E853E 0.15 TCGA-BR-4368-01 X 53586422 53586422 C T HUWE1 Missense_Mutation p.R2603Q 0.16 benign(0.238) TCGA-BR-4368-01 X 53590731 53590731 C T HUWE1 Missense_Mutation p.G2361R 0.29 benign(0.161) TCGA-BR-4368-01 X 54578085 54578085 C T GNL3L Silent p.G316G 0.18 TCGA-BR-4368-01 X 54578110 54578110 G A GNL3L Missense_Mutation p.V325M 0.29 deleterious(0.01) possibly_damaging(0.869) TCGA-BR-4368-01 X 54955519 54955519 A G TRO Missense_Mutation p.S788G 0.19 tolerated(0.33) unknown(0) TCGA-BR-4368-01 X 54955602 54955602 C T TRO Silent p.G815G 0.17 TCGA-BR-4368-01 X 57313352 57313352 G - FAAH2 Frame_Shift_Del p.G33Vfs*12 0.17 TCGA-BR-4368-01 X 5821511 5821511 A G NLGN4X Missense_Mutation p.V403A 0.18 deleterious(0) probably_damaging(0.992) TCGA-BR-4368-01 X 64734815 64734815 G A LAS1L Missense_Mutation p.P656S 0.20 deleterious(0) probably_damaging(1) TCGA-BR-4368-01 X 66937333 66937333 A G AR Silent p.L729L 0.25 TCGA-BR-4368-01 X 68381384 68381384 A T PJA1 Missense_Mutation p.N566K 0.08 deleterious(0.01) probably_damaging(0.917) TCGA-BR-4368-01 X 68749653 68749653 C T FAM155B Missense_Mutation p.R425C 0.11 deleterious(0.05) benign(0.002) TCGA-BR-4368-01 X 69385717 69385717 A G IGBP1 Silent p.E302E 0.30 TCGA-BR-4368-01 X 69496058 69496058 A G ARR3 Missense_Mutation p.Q91R 0.15 tolerated(0.49) benign(0.002) TCGA-BR-4368-01 X 69712027 69712027 G T DLG3 Missense_Mutation p.D531Y 0.20 deleterious(0) benign(0.407) TCGA-BR-4368-01 X 70330449 70330449 T - IL2RG Frame_Shift_Del p.K120Rfs*27 0.18 TCGA-BR-4368-01 X 70367840 70367840 G A NLGN3 Missense_Mutation p.E81K 0.13 tolerated(0.21) possibly_damaging(0.804) TCGA-BR-4368-01 X 71813009 71813009 G A PHKA1 Missense_Mutation p.A1063V 0.20 deleterious(0.03) probably_damaging(0.948) TCGA-BR-4368-01 X 76937945 76937945 C T ATRX Missense_Mutation p.E935K 0.15 benign(0.046) TCGA-BR-4368-01 X 78010323 78010323 G A LPAR4 5'UTR 0.29 TCGA-BR-4368-01 X 8767015 8767015 T C FAM9A Missense_Mutation p.K71R 0.16 tolerated_low_confidence(0.25) benign(0.096) TCGA-BR-4368-01 X 91134309 91134309 T - PCDH11X Intron 0.22 TCGA-BR-4368-01 X 96139888 96139888 C T RPA4 Silent p.N193N 0.19 TCGA-BR-4368-01 X 99924335 99924335 C T SRPX2 Nonsense_Mutation p.Q396* 0.22 TCGA-BR-4369-01 10 124008265 124008265 G A TACC2 Missense_Mutation p.D2834N 0.03 probably_damaging(0.995) TCGA-BR-4369-01 10 128974010 128974010 G A FAM196A Missense_Mutation p.S217F 0.17 deleterious(0.02) benign(0.015) TCGA-BR-4369-01 10 17087092 17087092 T G CUBN Missense_Mutation p.K1196Q 0.23 tolerated(0.15) benign(0.025) TCGA-BR-4369-01 10 81270565 81270565 C G AL133481.1 Intron 0.18 TCGA-BR-4369-01 10 93786897 93786897 T G BTAF1 Missense_Mutation p.V1749G 0.36 deleterious(0) probably_damaging(0.998) TCGA-BR-4369-01 11 103907674 103907674 G T DDI1 Missense_Mutation p.V42F 0.13 deleterious(0.03) benign(0.006) TCGA-BR-4369-01 11 5269719 5269719 T A HBG1 Splice_Site p.X106_splice 0.54 TCGA-BR-4369-01 11 55322842 55322842 A C OR4C15 Missense_Mutation p.I354L 0.67 tolerated_low_confidence(1) benign(0) TCGA-BR-4369-01 11 56057755 56057755 T G OR8H1 Silent p.R262R 0.62 TCGA-BR-4369-01 11 5776694 5776694 A G OR52N4 Missense_Mutation p.T242A 0.72 deleterious(0) probably_damaging(0.999) TCGA-BR-4369-01 11 7722004 7722004 C T OVCH2 Missense_Mutation p.R247Q 0.76 tolerated(0.51) benign(0.032) TCGA-BR-4369-01 11 92616518 92616518 G A FAT3 Missense_Mutation p.C4299Y 0.71 benign(0.421) TCGA-BR-4369-01 12 111884628 111884628 G A SH2B3 Missense_Mutation p.M268I 0.11 deleterious(0) probably_damaging(0.989) TCGA-BR-4369-01 12 21200087 21200087 T G SLCO1B7 Silent p.T310T 0.15 TCGA-BR-4369-01 12 5154807 5154807 G A KCNA5 Silent p.S498S 0.24 TCGA-BR-4369-01 12 6954785 6954785 G A GNB3 Silent p.S245S 0.27 TCGA-BR-4369-01 12 7528460 7528460 G A CD163L1 Missense_Mutation p.A841V 0.14 tolerated(0.58) benign(0.177) TCGA-BR-4369-01 12 98849655 98849655 C A SLC9A7P1 RNA 0.22 TCGA-BR-4369-01 13 23905608 23905608 A C SACS Missense_Mutation p.L4136R 0.26 probably_damaging(0.996) TCGA-BR-4369-01 13 36686252 36686252 A C DCLK1 Silent p.A159A 0.13 TCGA-BR-4369-01 13 36888456 36888456 T C SPG20 Missense_Mutation p.E464G 0.24 deleterious(0) probably_damaging(0.95) TCGA-BR-4369-01 13 41134248 41134248 T C FOXO1 Silent p.G460G 0.31 TCGA-BR-4369-01 14 101350961 101350961 C A RTL1 Missense_Mutation p.K55N 0.36 tolerated_low_confidence(0.5) benign(0.006) TCGA-BR-4369-01 14 31349900 31349900 A T COCH Missense_Mutation p.I197F 0.14 deleterious(0) possibly_damaging(0.894) TCGA-BR-4369-01 14 57675476 57675476 G C EXOC5 Missense_Mutation p.L660V 0.40 deleterious(0) probably_damaging(1) TCGA-BR-4369-01 14 58832906 58832906 C G ARID4A Missense_Mutation p.P1161A 0.08 tolerated(0.59) benign(0.005) TCGA-BR-4369-01 15 20170025 20170025 A C IGHV1OR15-9 Missense_Mutation p.F83V 0.17 tolerated(0.11) possibly_damaging(0.814) TCGA-BR-4369-01 15 22382668 22382668 T G OR4N4 Missense_Mutation p.L66V 0.05 deleterious(0) probably_damaging(0.997) TCGA-BR-4369-01 15 25219561 25219561 A C SNRPN 5'UTR 0.20 TCGA-BR-4369-01 15 25492381 25492381 G T SNORD115-40 3'Flank 0.24 TCGA-BR-4369-01 15 89392845 89392845 G A ACAN Missense_Mutation p.V637I 0.29 tolerated(0.07) unknown(0) TCGA-BR-4369-01 16 12662459 12662459 C T SNX29 Silent p.N805N 0.34 TCGA-BR-4369-01 16 20043132 20043132 C T GPR139 Silent p.P329P 0.23 TCGA-BR-4369-01 16 20559473 20559473 C A ACSM2B Nonsense_Mutation p.G337* 0.34 TCGA-BR-4369-01 16 55516874 55516874 G C MMP2 Silent p.V69V 0.32 TCGA-BR-4369-01 16 75636996 75636996 G A ADAT1 Missense_Mutation p.P455S 0.18 deleterious(0.03) probably_damaging(0.917) TCGA-BR-4369-01 17 10303964 10303964 T A MYH8 Missense_Mutation p.T1160S 0.08 tolerated(0.24) possibly_damaging(0.458) TCGA-BR-4369-01 17 27936244 27936244 G A ANKRD13B Missense_Mutation p.A236T 0.15 tolerated(0.28) probably_damaging(0.997) TCGA-BR-4369-01 17 29167747 29167747 G A ATAD5 Missense_Mutation p.R730H 0.14 deleterious(0) probably_damaging(0.999) TCGA-BR-4369-01 17 35766476 35766476 A C ACACA 5'UTR 0.10 TCGA-BR-4369-01 17 36708206 36708206 G T SRCIN1 Silent p.A881A 0.03 TCGA-BR-4369-01 17 43322779 43322779 C T FMNL1 Missense_Mutation p.A963V 0.18 deleterious(0) probably_damaging(1) TCGA-BR-4369-01 17 50008436 50008436 G A CA10 Missense_Mutation p.R65W 0.09 deleterious(0) probably_damaging(0.914) TCGA-BR-4369-01 17 61889335 61889335 G A DDX42 Missense_Mutation p.G481E 0.19 tolerated(0.38) benign(0.367) TCGA-BR-4369-01 17 9745873 9745873 C T GLP2R Silent p.N148N 0.21 TCGA-BR-4369-01 18 23759077 23759077 A C PSMA8 Silent p.R221R 0.47 TCGA-BR-4369-01 18 42530045 42530045 G C SETBP1 Missense_Mutation p.S247T 0.43 tolerated(0.83) benign(0.049) TCGA-BR-4369-01 18 5419834 5419834 T C EPB41L3 Missense_Mutation p.Q461R 0.20 tolerated(0.18) possibly_damaging(0.515) TCGA-BR-4369-01 19 14200075 14200075 C T SAMD1 Missense_Mutation p.E246K 0.33 tolerated(0.31) unknown(0) TCGA-BR-4369-01 19 22156444 22156444 C T ZNF208 Missense_Mutation p.M464I 0.20 tolerated(0.44) benign(0) TCGA-BR-4369-01 19 36166802 36166802 G A UPK1A Missense_Mutation p.A177T 0.16 tolerated(0.72) benign(0.007) TCGA-BR-4369-01 19 36370346 36370346 C T APLP1 3'UTR 0.09 TCGA-BR-4369-01 19 37006121 37006121 C T ZNF260 Missense_Mutation p.S7N 0.12 deleterious(0.02) benign(0) TCGA-BR-4369-01 19 37130918 37130918 T C ZNF461 Missense_Mutation p.K110R 0.13 tolerated(0.09) possibly_damaging(0.616) TCGA-BR-4369-01 19 38877004 38877004 G A GGN Missense_Mutation p.R300C 0.14 deleterious_low_confidence(0) unknown(0) TCGA-BR-4369-01 19 40392045 40392045 C T FCGBP Missense_Mutation p.V2781M 0.16 probably_damaging(0.999) TCGA-BR-4369-01 19 47996781 47996781 G A NAPA Intron 0.26 TCGA-BR-4369-01 19 49489176 49489176 G A GYS1 Silent p.T203T 0.17 TCGA-BR-4369-01 19 52439311 52439311 C T ZNF613 5'UTR 0.12 TCGA-BR-4369-01 19 55112391 55112392 - G LILRA1 3'UTR 0.16 TCGA-BR-4369-01 19 58601615 58601615 G A ZSCAN18 Missense_Mutation p.A63V 0.15 tolerated(0.31) probably_damaging(0.987) TCGA-BR-4369-01 19 9084024 9084024 C A MUC16 Missense_Mutation p.L2597F 0.20 unknown(0) TCGA-BR-4369-01 1 114437899 114437899 C T AP4B1 Missense_Mutation p.A670T 0.32 deleterious(0) probably_damaging(1) TCGA-BR-4369-01 1 154516536 154516536 A G TDRD10 Missense_Mutation p.T201A 0.10 tolerated(0.05) probably_damaging(0.998) TCGA-BR-4369-01 1 158324409 158324409 T G CD1E Missense_Mutation p.F101V 0.26 tolerated(0.08) benign(0.101) TCGA-BR-4369-01 1 158576892 158576892 T C OR10Z1 Silent p.L222L 0.15 TCGA-BR-4369-01 1 158590118 158590118 C - SPTA1 Frame_Shift_Del p.D2087Tfs*19 0.17 TCGA-BR-4369-01 1 158606534 158606534 A C SPTA1 Missense_Mutation p.V1736G 0.23 deleterious(0) probably_damaging(0.994) TCGA-BR-4369-01 1 159169651 159169651 T G CADM3 Missense_Mutation p.L389V 0.18 deleterious(0.04) benign(0.074) TCGA-BR-4369-01 1 161682977 161682977 C T FCRLA Missense_Mutation p.P319L 0.29 tolerated(0.74) benign(0.002) TCGA-BR-4369-01 1 172411186 172411186 G A PIGC Missense_Mutation p.L193F 0.26 tolerated(0.06) probably_damaging(1) TCGA-BR-4369-01 1 173010835 173010835 C T TNFSF18 Nonsense_Mutation p.W91* 0.14 TCGA-BR-4369-01 1 179076724 179076724 T C ABL2 3'UTR 0.33 TCGA-BR-4369-01 1 186388262 186388262 G A C1orf27 3'UTR 0.33 TCGA-BR-4369-01 1 214814102 214814102 G T CENPF Missense_Mutation p.M807I 0.21 benign(0.003) TCGA-BR-4369-01 1 216692753 216692753 C T ESRRG Silent p.T303T 0.19 TCGA-BR-4369-01 1 220193402 220193402 A T EPRS Missense_Mutation p.L426Q 0.32 deleterious(0) probably_damaging(0.995) TCGA-BR-4369-01 1 233498012 233498012 G A MLK4 Missense_Mutation p.D509N 0.08 deleterious(0.05) probably_damaging(1) TCGA-BR-4369-01 1 247054343 247054343 A G AHCTF1 Silent p.N664N 0.28 TCGA-BR-4369-01 1 247201286 247201286 A C ZNF670 Missense_Mutation p.L212R 0.24 deleterious(0) probably_damaging(0.925) TCGA-BR-4369-01 1 248202573 248202573 A C OR2L2 3'UTR 0.34 TCGA-BR-4369-01 1 248224727 248224727 T C OR2L3 Silent p.T248T 0.07 TCGA-BR-4369-01 1 27434258 27434258 C T SLC9A1 Missense_Mutation p.S388N 0.50 deleterious(0.01) probably_damaging(0.997) TCGA-BR-4369-01 1 33134400 33134400 G A RBBP4 Missense_Mutation p.G182E 0.28 deleterious(0) probably_damaging(0.995) TCGA-BR-4369-01 1 36642154 36642154 C T MAP7D1 Missense_Mutation p.P402L 0.11 benign(0.001) TCGA-BR-4369-01 1 40703533 40703533 G T RLF Missense_Mutation p.R1053S 0.06 tolerated(0.74) benign(0.02) TCGA-BR-4369-01 1 41483646 41483646 G A SLFNL1 Silent p.I206I 0.37 TCGA-BR-4369-01 1 46597556 46597556 C T PIK3R3 Silent p.S23S 0.17 TCGA-BR-4369-01 1 67356850 67356850 C T WDR78 Silent p.L210L 0.21 TCGA-BR-4369-01 1 67512967 67512967 T G SLC35D1 Missense_Mutation p.K206T 0.08 deleterious(0) possibly_damaging(0.886) TCGA-BR-4369-01 1 86355275 86355275 T G COL24A1 Missense_Mutation p.S982R 0.19 deleterious(0.04) benign(0.398) TCGA-BR-4369-01 1 91850767 91850767 G A HFM1 Missense_Mutation p.S260F 0.24 tolerated(0.41) benign(0.197) TCGA-BR-4369-01 20 16486762 16486762 C T KIF16B Missense_Mutation p.R258H 0.05 deleterious(0) probably_damaging(1) TCGA-BR-4369-01 20 33583278 33583278 G A MYH7B Missense_Mutation p.R989Q 0.15 benign(0.324) TCGA-BR-4369-01 20 34560665 34560665 C T CNBD2 Missense_Mutation p.H56Y 0.04 tolerated(0.35) benign(0.015) TCGA-BR-4369-01 20 44519034 44519034 A T NEURL2 Missense_Mutation p.D199E 0.14 tolerated(0.44) benign(0.008) TCGA-BR-4369-01 20 60994736 60994736 C T RBBP8NL 5'UTR 0.13 TCGA-BR-4369-01 20 62191324 62191324 C A HELZ2 Silent p.V2594V 0.12 TCGA-BR-4369-01 21 31045320 31045320 C T GRIK1 Missense_Mutation p.A237T 0.17 tolerated(0.45) possibly_damaging(0.836) TCGA-BR-4369-01 21 35742989 35742989 C G KCNE2 Missense_Mutation p.T71S 0.31 tolerated(0.48) probably_damaging(0.998) TCGA-BR-4369-01 21 39755316 39755316 G A ERG 3'UTR 0.14 TCGA-BR-4369-01 21 47422312 47422312 C T COL6A1 Silent p.I749I 0.14 TCGA-BR-4369-01 22 20229416 20229416 G A RTN4R Missense_Mutation p.R414C 0.15 deleterious(0) probably_damaging(0.951) TCGA-BR-4369-01 22 37319374 37319374 G T CSF2RB Silent p.R55R 0.28 TCGA-BR-4369-01 22 38469813 38469813 G A PICK1 Missense_Mutation p.E273K 0.25 deleterious(0) probably_damaging(0.969) TCGA-BR-4369-01 22 40820311 40820311 C T MKL1 Missense_Mutation p.E126K 0.33 deleterious(0.01) probably_damaging(0.955) TCGA-BR-4369-01 2 101893708 101893708 T A RNF149 Missense_Mutation p.I399F 0.30 deleterious_low_confidence(0.01) benign(0.033) TCGA-BR-4369-01 2 124999958 124999958 A C CNTNAP5 Missense_Mutation p.E123D 0.06 tolerated(0.15) benign(0.042) TCGA-BR-4369-01 2 1271173 1271173 T A SNTG2 Missense_Mutation p.L372M 0.25 tolerated(0.17) possibly_damaging(0.868) TCGA-BR-4369-01 2 128051203 128051203 C A ERCC3 Silent p.S40S 0.06 TCGA-BR-4369-01 2 133539979 133539979 A G NCKAP5 Missense_Mutation p.S1469P 0.11 tolerated(0.07) benign(0.125) TCGA-BR-4369-01 2 135711860 135711860 C G CCNT2 Missense_Mutation p.S612C 0.37 deleterious(0.01) probably_damaging(0.997) TCGA-BR-4369-01 2 138373777 138373777 T G THSD7B Silent p.T1155T 0.09 TCGA-BR-4369-01 2 165984255 165984255 G A SCN3A Silent p.F1093F 0.07 TCGA-BR-4369-01 2 171687621 171687621 T G GAD1 Missense_Mutation p.L156V 0.27 deleterious(0.02) benign(0.061) TCGA-BR-4369-01 2 175335232 175335232 G A GPR155 Silent p.G304G 0.34 TCGA-BR-4369-01 2 179301024 179301024 A T PRKRA Nonsense_Mutation p.L211* 0.26 TCGA-BR-4369-01 2 190636564 190636564 G A ORMDL1 Missense_Mutation p.L131F 0.12 deleterious(0) probably_damaging(0.999) TCGA-BR-4369-01 2 207014614 207014614 G T NDUFS1 Missense_Mutation p.F77L 0.06 deleterious(0.01) probably_damaging(0.988) TCGA-BR-4369-01 2 209324631 209324631 T G PTH2R Missense_Mutation p.L309R 0.30 deleterious(0) probably_damaging(0.921) TCGA-BR-4369-01 2 211512654 211512654 A G CPS1 Missense_Mutation p.K1076R 0.28 tolerated(1) benign(0.005) TCGA-BR-4369-01 2 220315878 220315878 G A SPEG Missense_Mutation p.V712M 0.30 probably_damaging(0.986) TCGA-BR-4369-01 2 228882722 228882722 C G SPHKAP Missense_Mutation p.D950H 0.23 deleterious(0) probably_damaging(0.987) TCGA-BR-4369-01 2 24413576 24413576 G A FAM228A 3'UTR 0.25 TCGA-BR-4369-01 2 277373 277373 G C ACP1 3'UTR 0.23 TCGA-BR-4369-01 2 43452657 43452657 T C ZFP36L2 Missense_Mutation p.T96A 0.24 tolerated(0.89) benign(0) TCGA-BR-4369-01 2 61021178 61021178 T C PAPOLG Missense_Mutation p.V614A 0.28 tolerated_low_confidence(0.52) benign(0.003) TCGA-BR-4369-01 2 68882442 68882442 G A PROKR1 Missense_Mutation p.V306M 0.12 tolerated(0.11) benign(0.305) TCGA-BR-4369-01 2 79255020 79255020 T G REG3G Missense_Mutation p.L141V 0.28 tolerated(0.33) benign(0.004) TCGA-BR-4369-01 2 88889965 88889965 G A EIF2AK3 Silent p.Y387Y 0.25 TCGA-BR-4369-01 2 95540714 95540714 C T TEKT4 Missense_Mutation p.R303W 0.23 deleterious(0) benign(0.105) TCGA-BR-4369-01 3 119132796 119132796 C A ARHGAP31 Missense_Mutation p.P674T 0.14 tolerated_low_confidence(0.11) benign(0.01) TCGA-BR-4369-01 3 122399899 122399901 TTC - PARP14 In_Frame_Del p.F58del 0.14 TCGA-BR-4369-01 3 129694763 129694763 C T TRH Missense_Mutation p.T35M 0.17 tolerated(0.51) benign(0.004) TCGA-BR-4369-01 3 131442333 131442333 T G CPNE4 Missense_Mutation p.K106T 0.35 tolerated(0.16) possibly_damaging(0.515) TCGA-BR-4369-01 3 14520637 14520637 C T SLC6A6 Missense_Mutation p.R499W 0.17 deleterious(0) probably_damaging(0.997) TCGA-BR-4369-01 3 152058254 152058254 C G TMEM14E 3'UTR 0.33 TCGA-BR-4369-01 3 16344234 16344234 G A OXNAD1 Missense_Mutation p.E255K 0.19 tolerated(0.1) benign(0.035) TCGA-BR-4369-01 3 178560470 178560470 T G KCNMB2 Missense_Mutation p.N151K 0.38 deleterious(0.01) benign(0.371) TCGA-BR-4369-01 3 178952176 178952176 C G PIK3CA 3'UTR 0.38 TCGA-BR-4369-01 3 183396874 183396874 G A KLHL24 Missense_Mutation p.E535K 0.14 deleterious(0.02) probably_damaging(1) TCGA-BR-4369-01 3 403458 403458 C T CHL1 Silent p.C461C 0.13 TCGA-BR-4369-01 3 44434444 44434444 C A TCAIM Missense_Mutation p.H224N 0.24 tolerated(0.48) benign(0.001) TCGA-BR-4369-01 3 49212502 49212502 G A KLHDC8B Nonsense_Mutation p.W258* 0.16 TCGA-BR-4369-01 3 57542655 57542655 C T PDE12 Silent p.L183L 0.19 TCGA-BR-4369-01 3 58419403 58419403 C T PDHB Silent p.G17G 0.26 TCGA-BR-4369-01 3 88040723 88040723 A G HTR1F Missense_Mutation p.E275G 0.13 tolerated(0.05) benign(0.007) TCGA-BR-4369-01 3 9848020 9848020 G A ARPC4 3'UTR 0.36 TCGA-BR-4369-01 4 100470429 100470429 A C TRMT10A Missense_Mutation p.V279G 0.26 deleterious(0.03) benign(0.272) TCGA-BR-4369-01 4 126411219 126411219 G A FAT4 Silent p.L4414L 0.11 TCGA-BR-4369-01 4 154525488 154525488 G A KIAA0922 Silent p.L1108L 0.28 TCGA-BR-4369-01 4 177136726 177136726 A C ASB5 3'UTR 0.05 TCGA-BR-4369-01 4 189068336 189068336 A C TRIML1 Missense_Mutation p.K406T 0.20 deleterious(0.01) possibly_damaging(0.872) TCGA-BR-4369-01 4 42895288 42895288 T G GRXCR1 Missense_Mutation p.L2R 0.32 deleterious_low_confidence(0.03) benign(0.424) TCGA-BR-4369-01 4 47682178 47682178 T G CORIN Missense_Mutation p.K371T 0.36 deleterious(0.04) probably_damaging(0.999) TCGA-BR-4369-01 4 5617166 5617166 C T EVC2 Missense_Mutation p.E938K 0.35 tolerated(0.06) benign(0.218) TCGA-BR-4369-01 4 70592716 70592716 C T SULT1B1 3'UTR 0.13 TCGA-BR-4369-01 4 843686 843686 G C GAK Silent p.P1276P 0.25 TCGA-BR-4369-01 5 112177050 112177050 G A APC Missense_Mutation p.R1920Q 0.15 probably_damaging(0.992) TCGA-BR-4369-01 5 113740479 113740479 C T KCNN2 Silent p.C309C 0.14 TCGA-BR-4369-01 5 140182956 140182956 C T PCDHA3 Missense_Mutation p.A725V 0.09 tolerated_low_confidence(0.08) benign(0.027) TCGA-BR-4369-01 5 140307553 140307553 T A PCDHAC1 Missense_Mutation p.I359N 0.25 deleterious(0) probably_damaging(0.996) TCGA-BR-4369-01 5 140476674 140476674 A C PCDHB2 Missense_Mutation p.K767T 0.16 deleterious_low_confidence(0) possibly_damaging(0.703) TCGA-BR-4369-01 5 140516111 140516111 C T PCDHB5 Silent p.A365A 0.09 TCGA-BR-4369-01 5 140712418 140712418 C T PCDHGA1 Missense_Mutation p.R723C 0.13 deleterious_low_confidence(0.01) probably_damaging(0.953) TCGA-BR-4369-01 5 140865132 140865132 C T PCDHGC4 Missense_Mutation p.P131L 0.03 deleterious(0) probably_damaging(1) TCGA-BR-4369-01 5 154183812 154183812 C T LARP1 Missense_Mutation p.H754Y 0.14 deleterious(0) probably_damaging(0.95) TCGA-BR-4369-01 5 161300185 161300185 A C GABRA1 Silent p.G106G 0.07 TCGA-BR-4369-01 5 179729482 179729482 G A GFPT2 Silent p.L649L 0.15 TCGA-BR-4369-01 5 35705878 35705878 T C SPEF2 Missense_Mutation p.L878P 0.26 deleterious(0) benign(0.235) TCGA-BR-4369-01 5 38527279 38527279 G C LIFR Missense_Mutation p.F125L 0.11 deleterious(0.04) benign(0.418) TCGA-BR-4369-01 5 45262335 45262335 G A HCN1 Silent p.S787S 0.11 TCGA-BR-4369-01 5 5303848 5303848 A C ADAMTS16 Missense_Mutation p.K1052T 0.18 deleterious(0.01) benign(0.072) TCGA-BR-4369-01 5 5319202 5319202 A G ADAMTS16 Missense_Mutation p.K1209R 0.28 tolerated(0.26) benign(0.02) TCGA-BR-4369-01 5 67591121 67591121 C T PIK3R1 Nonsense_Mutation p.Q572* 0.28 TCGA-BR-4369-01 5 82649092 82649092 G C XRCC4 3'UTR 0.42 TCGA-BR-4369-01 5 90119348 90119348 G C GPR98 Missense_Mutation p.G5435R 0.09 probably_damaging(0.979) TCGA-BR-4369-01 6 109294877 109294877 C A ARMC2 3'UTR 0.18 TCGA-BR-4369-01 6 135560344 135560344 G A MIR548A2 RNA 0.12 TCGA-BR-4369-01 6 158540190 158540190 T G SERAC1 Missense_Mutation p.K393N 0.10 deleterious(0.04) possibly_damaging(0.787) TCGA-BR-4369-01 6 26216771 26216771 C G HIST1H2BG Missense_Mutation p.R34P 0.18 deleterious_low_confidence(0.01) unknown(0) TCGA-BR-4369-01 6 28554203 28554203 C T SCAND3 Missense_Mutation p.E98K 0.12 deleterious_low_confidence(0) probably_damaging(1) TCGA-BR-4369-01 6 28554204 28554204 C A SCAND3 Silent p.L97L 0.12 TCGA-BR-4369-01 6 31852223 31852223 T A EHMT2 Missense_Mutation p.K906M 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-BR-4369-01 6 50803904 50803904 G A TFAP2B Silent p.S244S 0.11 TCGA-BR-4369-01 6 70071176 70071176 T C BAI3 Silent p.H1337H 0.23 TCGA-BR-4369-01 6 7583269 7583269 A G DSP Missense_Mutation p.Q1925R 0.19 probably_damaging(0.978) TCGA-BR-4369-01 7 100200269 100200269 G A PCOLCE Intron 0.18 TCGA-BR-4369-01 7 100839530 100839530 C T MOGAT3 Missense_Mutation p.R270H 0.19 tolerated(0.08) benign(0.404) TCGA-BR-4369-01 7 104753038 104753038 C T KMT2E Missense_Mutation p.S1612F 0.11 deleterious_low_confidence(0) possibly_damaging(0.485) TCGA-BR-4369-01 7 114174676 114174676 T G FOXP2 Missense_Mutation p.L58R 0.12 tolerated_low_confidence(0.05) probably_damaging(0.985) TCGA-BR-4369-01 7 129066383 129066383 C T AHCYL2 Missense_Mutation p.P603L 0.37 deleterious(0) probably_damaging(1) TCGA-BR-4369-01 7 13935460 13935460 G A ETV1 3'UTR 0.25 TCGA-BR-4369-01 7 142020925 142020925 T G TRBV5-1 Missense_Mutation p.L11R 0.59 deleterious(0) probably_damaging(0.986) TCGA-BR-4369-01 7 149986639 149986639 A G ACTR3C Missense_Mutation p.I66T 0.23 deleterious(0) probably_damaging(0.999) TCGA-BR-4369-01 7 151874791 151874791 C G KMT2C Missense_Mutation p.E2583Q 0.41 possibly_damaging(0.754) TCGA-BR-4369-01 7 19765389 19765389 C A TMEM196 Missense_Mutation p.M69I 0.08 tolerated(0.43) benign(0.043) TCGA-BR-4369-01 7 45753346 45753346 C T ADCY1 Nonsense_Mutation p.R1038* 0.11 TCGA-BR-4369-01 7 45954522 45954522 T G IGFBP3 Missense_Mutation p.K264T 0.07 deleterious(0.03) probably_damaging(1) TCGA-BR-4369-01 7 48550761 48550761 T G ABCA13 Missense_Mutation p.L4536V 0.22 probably_damaging(1) TCGA-BR-4369-01 7 5256764 5256764 G A WIPI2 Silent p.A174A 0.08 TCGA-BR-4369-01 7 72658637 72658637 C A GTF2IRD2P1 RNA 0.69 TCGA-BR-4369-01 7 72954381 72954381 G A BCL7B Silent p.D89D 0.14 TCGA-BR-4369-01 7 77212905 77212905 C G PTPN12 Missense_Mutation p.Q107E 0.29 deleterious(0) probably_damaging(0.997) TCGA-BR-4369-01 7 98513368 98513368 A T TRRAP Missense_Mutation p.N741I 0.07 benign(0.248) TCGA-BR-4369-01 8 105160990 105160990 A G RIMS2 Intron 0.14 TCGA-BR-4369-01 8 105263384 105263384 T A RIMS2 Missense_Mutation p.V1275D 0.20 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BR-4369-01 8 113933947 113933947 T G CSMD3 Missense_Mutation p.E514D 0.33 tolerated(0.42) benign(0.05) TCGA-BR-4369-01 8 116599678 116599678 T G TRPS1 Missense_Mutation p.K750N 0.32 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BR-4369-01 8 133048652 133048652 A G OC90 Intron 0.37 TCGA-BR-4369-01 8 30546716 30546716 G A GSR Missense_Mutation p.R335W 0.43 deleterious(0.01) possibly_damaging(0.725) TCGA-BR-4369-01 8 35631916 35631916 C T UNC5D Missense_Mutation p.R860W 0.28 deleterious(0) probably_damaging(1) TCGA-BR-4369-01 8 52321637 52321637 G A PXDNL Silent p.H849H 0.32 TCGA-BR-4369-01 8 57026167 57026167 C T MOS Silent p.T125T 0.30 TCGA-BR-4369-01 8 65536991 65536991 T G CYP7B1 Missense_Mutation p.Q76H 0.12 deleterious(0.01) probably_damaging(0.982) TCGA-BR-4369-01 8 87645052 87645052 A C CNGB3 Silent p.T416T 0.51 TCGA-BR-4369-01 8 87751922 87751922 T G CNGB3 Missense_Mutation p.T58P 0.16 tolerated(0.39) benign(0) TCGA-BR-4369-01 8 87899806 87899806 T C CNBD1 Missense_Mutation p.L42S 0.33 deleterious(0) probably_damaging(0.997) TCGA-BR-4369-01 8 88249144 88249144 C A CNBD1 Intron 0.15 TCGA-BR-4369-01 8 89068435 89068435 T C MMP16 Missense_Mutation p.S432G 0.19 tolerated(0.33) benign(0.077) TCGA-BR-4369-01 9 120475898 120475898 T G TLR4 Missense_Mutation p.L498V 0.24 deleterious(0) probably_damaging(0.999) TCGA-BR-4369-01 9 131329152 131329152 C T SPTAN1 Nonsense_Mutation p.R45* 0.29 TCGA-BR-4369-01 9 134136516 134136516 T A FAM78A Missense_Mutation p.N182I 0.17 tolerated(0.26) benign(0.064) TCGA-BR-4369-01 9 2718193 2718193 G A KCNV2 Missense_Mutation p.D152N 0.46 deleterious(0) probably_damaging(0.999) TCGA-BR-4369-01 9 8376048 8376048 T G PTPRD Missense_Mutation p.T1517P 0.44 deleterious(0) probably_damaging(0.999) TCGA-BR-4369-01 9 84531877 84531877 C A SPATA31D5P RNA 0.32 TCGA-BR-4369-01 9 84531878 84531878 T A SPATA31D5P RNA 0.32 TCGA-BR-4369-01 9 86506355 86506355 A C KIF27 Missense_Mutation p.L555R 0.29 deleterious(0.03) benign(0.031) TCGA-BR-4369-01 9 91150520 91150520 C T NXNL2 Silent p.A57A 0.39 TCGA-BR-4369-01 X 115586617 115586617 G A SLC6A14 Silent p.T533T 0.24 TCGA-BR-4369-01 X 119505008 119505008 G A ATP1B4 Missense_Mutation p.V169I 0.17 tolerated(0.41) benign(0.013) TCGA-BR-4369-01 X 21581553 21581553 G A CNKSR2 Missense_Mutation p.E531K 0.36 tolerated(0.16) benign(0.017) TCGA-BR-4369-01 X 32486747 32486747 C T DMD Silent p.A1010A 0.15 TCGA-BR-4369-01 X 73959949 73959949 A G KIAA2022 Silent p.S1481S 0.33 TCGA-BR-4369-01 X 86887303 86887303 T G KLHL4 Missense_Mutation p.V473G 0.43 deleterious(0) probably_damaging(1) TCGA-BR-4369-01 X 9693809 9693809 G A GPR143 Missense_Mutation p.L398F 0.12 tolerated_low_confidence(0.2) benign(0.419) TCGA-BR-4370-01 10 102988431 102988431 G A LBX1 Missense_Mutation p.R48W 0.16 deleterious(0) possibly_damaging(0.628) TCGA-BR-4370-01 10 104018769 104018769 G A GBF1 Missense_Mutation p.R25Q 0.25 deleterious(0) probably_damaging(0.96) TCGA-BR-4370-01 10 105178356 105178356 C T PDCD11 Nonsense_Mutation p.R691* 0.16 TCGA-BR-4370-01 10 115884951 115884951 C T C10orf118 Missense_Mutation p.R883H 0.15 deleterious(0.01) benign(0.235) TCGA-BR-4370-01 10 116232891 116232891 C T ABLIM1 Missense_Mutation p.A374T 0.21 deleterious(0) possibly_damaging(0.748) TCGA-BR-4370-01 10 118030416 118030416 G A GFRA1 Silent p.L84L 0.20 TCGA-BR-4370-01 10 118313341 118313341 C T PNLIP Missense_Mutation p.R188C 0.18 deleterious(0) probably_damaging(1) TCGA-BR-4370-01 10 121429560 121429560 G A BAG3 Silent p.A126A 0.18 TCGA-BR-4370-01 10 124810661 124810661 T C ACADSB Missense_Mutation p.F363L 0.17 deleterious(0.01) benign(0.029) TCGA-BR-4370-01 10 124909353 124909353 G A HMX2 Missense_Mutation p.R179H 0.23 deleterious(0) probably_damaging(1) TCGA-BR-4370-01 10 125528209 125528209 C - CPXM2 Frame_Shift_Del p.A378Pfs*82 0.30 TCGA-BR-4370-01 10 128851016 128851016 A C DOCK1 Missense_Mutation p.K737T 0.23 tolerated(0.11) benign(0) TCGA-BR-4370-01 10 129845712 129845712 G C PTPRE Silent p.L56L 0.27 TCGA-BR-4370-01 10 13217572 13217572 C T MCM10 Missense_Mutation p.R220W 0.19 deleterious(0.03) benign(0) TCGA-BR-4370-01 10 134004293 134004293 G A DPYSL4 Missense_Mutation p.D28N 0.14 deleterious(0) probably_damaging(0.999) TCGA-BR-4370-01 10 134999950 134999950 G A KNDC1 Silent p.E366E 0.26 TCGA-BR-4370-01 10 14881910 14881910 C T HSPA14 Missense_Mutation p.R22W 0.15 deleterious(0) probably_damaging(1) TCGA-BR-4370-01 10 16948350 16948350 G A CUBN Silent p.D2588D 0.15 TCGA-BR-4370-01 10 30318027 30318027 C T KIAA1462 Silent p.P350P 0.17 TCGA-BR-4370-01 10 3155640 3155640 G A PFKP Missense_Mutation p.R434H 0.12 deleterious(0) probably_damaging(1) TCGA-BR-4370-01 10 34573135 34573135 G A PARD3 Missense_Mutation p.T1038M 0.17 tolerated(0.09) benign(0.026) TCGA-BR-4370-01 10 35929386 35929386 C T FZD8 Silent p.S324S 0.21 TCGA-BR-4370-01 10 373069 373069 C T DIP2C Silent p.A1267A 0.23 TCGA-BR-4370-01 10 45472904 45472904 C T C10orf10 Missense_Mutation p.R192H 0.17 tolerated(0.07) benign(0) TCGA-BR-4370-01 10 47087852 47087852 G A NPY4R Missense_Mutation p.V357I 0.07 tolerated(0.06) benign(0.18) TCGA-BR-4370-01 10 50681549 50681549 G - ERCC6 Frame_Shift_Del p.Q895Sfs*3 0.09 TCGA-BR-4370-01 10 50736485 50736485 G A ERCC6-PGBD3 Silent p.H210H 0.20 TCGA-BR-4370-01 10 62021646 62021646 G A ANK3 Nonsense_Mutation p.R257* 0.16 TCGA-BR-4370-01 10 63852248 63852248 C G ARID5B Missense_Mutation p.A1009G 0.12 deleterious(0.01) probably_damaging(0.944) TCGA-BR-4370-01 10 63852392 63852392 C T ARID5B Missense_Mutation p.A1057V 0.06 tolerated(0.43) benign(0.001) TCGA-BR-4370-01 10 69935180 69935180 A - MYPN Frame_Shift_Del p.I891* 0.24 TCGA-BR-4370-01 10 70332153 70332153 A - TET1 Frame_Shift_Del p.K22Rfs*23 0.24 TCGA-BR-4370-01 10 70451314 70451314 A - TET1 Frame_Shift_Del p.N2053Tfs*2 0.17 TCGA-BR-4370-01 10 72324139 72324139 C T PALD1 Missense_Mutation p.A761V 0.22 deleterious(0.02) benign(0.25) TCGA-BR-4370-01 10 7290522 7290522 C T SFMBT2 Silent p.A320A 0.11 TCGA-BR-4370-01 10 73453968 73453968 C T CDH23 Silent p.R339R 0.19 TCGA-BR-4370-01 10 75435611 75435611 C T AGAP5 Silent p.P269P 0.18 TCGA-BR-4370-01 10 79576781 79576781 G A DLG5 Silent p.V1286V 0.22 TCGA-BR-4370-01 10 79752975 79752975 T C POLR3A Missense_Mutation p.R923G 0.22 deleterious(0) probably_damaging(0.98) TCGA-BR-4370-01 10 81272560 81272560 G A EIF5AL1 Missense_Mutation p.G52D 0.30 deleterious(0.02) possibly_damaging(0.626) TCGA-BR-4370-01 10 82033576 82033576 G A MAT1A Silent p.S383S 0.17 TCGA-BR-4370-01 10 84745517 84745517 T - NRG3 3'Flank 0.23 TCGA-BR-4370-01 10 88439846 88439846 C T LDB3 Missense_Mutation p.R85C 0.17 deleterious(0) probably_damaging(0.988) TCGA-BR-4370-01 10 91005477 91005477 C T LIPA Missense_Mutation p.C62Y 0.20 deleterious(0.01) possibly_damaging(0.652) TCGA-BR-4370-01 10 91143252 91143252 T C IFIT1B Missense_Mutation p.V61A 0.16 deleterious(0.03) probably_damaging(0.981) TCGA-BR-4370-01 10 91344112 91344113 - T PANK1 3'UTR 0.27 TCGA-BR-4370-01 10 92508866 92508866 G T HTR7 Missense_Mutation p.P342Q 0.16 deleterious(0) probably_damaging(1) TCGA-BR-4370-01 10 93389996 93389996 A T PPP1R3C Missense_Mutation p.D214E 0.16 deleterious(0) probably_damaging(0.999) TCGA-BR-4370-01 10 94109437 94109437 G T MARCH5 Missense_Mutation p.C188F 0.17 tolerated(0.1) benign(0.012) TCGA-BR-4370-01 10 96259980 96259980 G A TBC1D12 Missense_Mutation p.R472H 0.20 tolerated(0.18) benign(0.01) TCGA-BR-4370-01 10 96333921 96333921 G A HELLS Missense_Mutation p.V228I 0.15 tolerated(0.9) benign(0.023) TCGA-BR-4370-01 10 96535238 96535238 T C CYP2C19 Silent p.I141I 0.18 TCGA-BR-4370-01 10 98823348 98823348 G A SLIT1 Silent p.C219C 0.22 TCGA-BR-4370-01 10 99677361 99677361 C T CRTAC1 Missense_Mutation p.G204D 0.20 deleterious(0) probably_damaging(0.992) TCGA-BR-4370-01 11 1018685 1018685 T C MUC6 Silent p.P1372P 0.23 TCGA-BR-4370-01 11 102398591 102398591 C T MMP7 Missense_Mutation p.V78I 0.19 tolerated(0.23) benign(0.003) TCGA-BR-4370-01 11 107299560 107299560 T - CWF19L2 Frame_Shift_Del p.E467Nfs*22 0.19 TCGA-BR-4370-01 11 108117774 108117778 AGAGG - ATM Frame_Shift_Del p.R329Kfs*8 0.13 TCGA-BR-4370-01 11 108382068 108382068 A G EXPH5 Missense_Mutation p.L1389S 0.18 tolerated(0.19) benign(0.215) TCGA-BR-4370-01 11 111250056 111250056 G A POU2AF1 5'UTR 0.12 TCGA-BR-4370-01 11 113934884 113934884 G A ZBTB16 Missense_Mutation p.V288I 0.20 deleterious(0.01) probably_damaging(0.992) TCGA-BR-4370-01 11 11470334 11470334 G A GALNT18 Missense_Mutation p.R129C 0.35 deleterious(0) probably_damaging(0.965) TCGA-BR-4370-01 11 116631626 116631626 C T BUD13 Missense_Mutation p.R360Q 0.23 deleterious(0.03) benign(0.021) TCGA-BR-4370-01 11 116661768 116661768 G A APOA5 Silent p.S59S 0.21 TCGA-BR-4370-01 11 117064605 117064605 C T SIDT2 Missense_Mutation p.L750F 0.18 tolerated(0.91) benign(0.056) TCGA-BR-4370-01 11 117077045 117077045 C T PCSK7 Missense_Mutation p.V676I 0.16 tolerated(0.27) benign(0.007) TCGA-BR-4370-01 11 118454580 118454580 G T ARCN1 Missense_Mutation p.Q168H 0.15 deleterious(0.02) benign(0.401) TCGA-BR-4370-01 11 119290035 119290035 G A THY1 3'UTR 0.21 TCGA-BR-4370-01 11 120201049 120201049 C T TMEM136 Missense_Mutation p.T210M 0.21 deleterious(0.04) possibly_damaging(0.466) TCGA-BR-4370-01 11 120308057 120308057 A - ARHGEF12 Frame_Shift_Del p.N323Tfs*24 0.18 TCGA-BR-4370-01 11 12225908 12225908 G A MICAL2 Missense_Mutation p.V126M 0.21 deleterious(0) probably_damaging(1) TCGA-BR-4370-01 11 123900389 123900389 G A OR10G8 Silent p.A20A 0.18 TCGA-BR-4370-01 11 124121150 124121150 C A OR8G1 Missense_Mutation p.S243Y 0.21 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-BR-4370-01 11 124618265 124618265 C - VSIG2 Intron 0.13 TCGA-BR-4370-01 11 124637344 124637344 T C MSANTD2 Missense_Mutation p.T418A 0.19 tolerated_low_confidence(0.88) benign(0.001) TCGA-BR-4370-01 11 1250470 1250470 C A MUC5B Silent p.P349P 0.28 TCGA-BR-4370-01 11 1250991 1250991 C T MUC5B Missense_Mutation p.R392C 0.25 unknown(0) TCGA-BR-4370-01 11 125867186 125867186 G A CDON Missense_Mutation p.R760W 0.08 deleterious(0.04) probably_damaging(0.988) TCGA-BR-4370-01 11 126132030 126132030 C T FAM118B 3'UTR 0.22 TCGA-BR-4370-01 11 126162425 126162425 G A TIRAP Missense_Mutation p.E41K 0.18 tolerated(0.12) benign(0.424) TCGA-BR-4370-01 11 126294828 126294828 G A KIRREL3 Missense_Mutation p.R662C 0.24 deleterious(0) possibly_damaging(0.852) TCGA-BR-4370-01 11 128638142 128638142 C T FLI1 Silent p.N120N 0.15 TCGA-BR-4370-01 11 132177681 132177681 G A NTM Missense_Mutation p.A209T 0.19 tolerated(0.85) benign(0.019) TCGA-BR-4370-01 11 134015869 134015869 C T JAM3 Missense_Mutation p.S214F 0.17 deleterious(0) possibly_damaging(0.673) TCGA-BR-4370-01 11 134038926 134038926 T C NCAPD3 Missense_Mutation p.H1042R 0.21 deleterious(0) possibly_damaging(0.588) TCGA-BR-4370-01 11 134151966 134151966 G A GLB1L3 Missense_Mutation p.R160H 0.27 deleterious(0.03) probably_damaging(0.999) TCGA-BR-4370-01 11 14632665 14632665 C T PSMA1 5'UTR 0.15 TCGA-BR-4370-01 11 16208405 16208407 TCA - SOX6 In_Frame_Del p.D210del 0.29 TCGA-BR-4370-01 11 18057575 18057576 - A TPH1 Frame_Shift_Ins p.H78Sfs*17 0.18 TCGA-BR-4370-01 11 19077199 19077199 T C MRGPRX2 Missense_Mutation p.K251E 0.18 tolerated(1) benign(0.017) TCGA-BR-4370-01 11 32450131 32450131 G A WT1 Silent p.S227S 0.18 TCGA-BR-4370-01 11 33047274 33047274 C T DEPDC7 Missense_Mutation p.T48I 0.20 deleterious(0) benign(0.173) TCGA-BR-4370-01 11 33308378 33308378 G A HIPK3 Missense_Mutation p.A140T 0.21 tolerated(0.92) benign(0.004) TCGA-BR-4370-01 11 3392215 3392215 G A ZNF195 Silent p.D72D 0.17 TCGA-BR-4370-01 11 35456181 35456181 G A PAMR1 Missense_Mutation p.A519V 0.23 tolerated(0.09) possibly_damaging(0.499) TCGA-BR-4370-01 11 36511231 36511231 T C TRAF6 3'UTR 0.31 TCGA-BR-4370-01 11 36596082 36596082 C T RAG1 Missense_Mutation p.R410W 0.20 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-BR-4370-01 11 40137608 40137608 G A LRRC4C Missense_Mutation p.R79W 0.12 deleterious(0) probably_damaging(0.98) TCGA-BR-4370-01 11 45273978 45273978 T G SYT13 Silent p.S280S 0.15 TCGA-BR-4370-01 11 45935724 45935724 G A PEX16 Missense_Mutation p.S242L 0.09 deleterious(0.01) probably_damaging(1) TCGA-BR-4370-01 11 47267247 47267247 T C ACP2 Missense_Mutation p.I146V 0.18 tolerated(0.31) benign(0.001) TCGA-BR-4370-01 11 47765532 47765532 G A FNBP4 Nonsense_Mutation p.R477* 0.06 TCGA-BR-4370-01 11 55681565 55681565 C A OR5W2 Missense_Mutation p.R165L 0.15 deleterious(0.01) benign(0.238) TCGA-BR-4370-01 11 58477306 58477307 - T GLYAT Frame_Shift_Ins p.M275Nfs*39 0.19 TCGA-BR-4370-01 11 59224664 59224664 C T OR4D6 Silent p.T77T 0.24 TCGA-BR-4370-01 11 5969078 5969078 G A OR56A3 Missense_Mutation p.A168T 0.23 deleterious(0.02) possibly_damaging(0.555) TCGA-BR-4370-01 11 60183466 60183466 C T MS4A14 Missense_Mutation p.S375F 0.13 tolerated(0.13) benign(0.105) TCGA-BR-4370-01 11 60702844 60702844 C T TMEM132A Missense_Mutation p.R654W 0.15 tolerated(0.19) benign(0.033) TCGA-BR-4370-01 11 60885784 60885784 T C CD5 Missense_Mutation p.S78P 0.14 deleterious(0.05) possibly_damaging(0.625) TCGA-BR-4370-01 11 609248 609248 C T PHRF1 Silent p.S1263S 0.17 TCGA-BR-4370-01 11 61094323 61094323 G A DDB1 Nonsense_Mutation p.R198* 0.16 TCGA-BR-4370-01 11 61504756 61504756 C T DAGLA Missense_Mutation p.L492F 0.13 deleterious(0) probably_damaging(0.999) TCGA-BR-4370-01 11 61511578 61511578 T C DAGLA Missense_Mutation p.F916L 0.06 deleterious_low_confidence(0.01) benign(0.113) TCGA-BR-4370-01 11 62303536 62303536 A G AHNAK Missense_Mutation p.L12P 0.11 probably_damaging(0.992) TCGA-BR-4370-01 11 62455946 62455946 G A LRRN4CL Missense_Mutation p.A12V 0.30 tolerated(0.07) benign(0.013) TCGA-BR-4370-01 11 62483395 62483395 G T HNRNPUL2 Silent p.R666R 0.15 TCGA-BR-4370-01 11 62519939 62519939 G A ZBTB3 Missense_Mutation p.P450S 0.17 tolerated(0.42) benign(0.013) TCGA-BR-4370-01 11 63672263 63672263 C - MARK2 Frame_Shift_Del p.Q563Sfs*53 0.29 TCGA-BR-4370-01 11 63722061 63722061 C T NAA40 3'UTR 0.24 TCGA-BR-4370-01 11 64084953 64084953 C - TRMT112 Frame_Shift_Del p.V16Wfs*30 0.28 TCGA-BR-4370-01 11 64566893 64566893 C T MAP4K2 Silent p.P351P 0.18 TCGA-BR-4370-01 11 6477741 6477741 G A TRIM3 Silent p.Y405Y 0.16 TCGA-BR-4370-01 11 65265772 65265773 - A MALAT1 RNA 0.15 TCGA-BR-4370-01 11 65271960 65271960 A - MALAT1 RNA 0.31 TCGA-BR-4370-01 11 65272638 65272639 - T MALAT1 RNA 0.17 TCGA-BR-4370-01 11 65302744 65302744 T C SCYL1 Missense_Mutation p.V426A 0.18 tolerated(0.66) benign(0.044) TCGA-BR-4370-01 11 6532612 6532612 C T DNHD1 Missense_Mutation p.R449W 0.18 possibly_damaging(0.836) TCGA-BR-4370-01 11 65810683 65810683 G A GAL3ST3 Silent p.F197F 0.16 TCGA-BR-4370-01 11 66084469 66084469 C T CD248 Silent p.A10A 0.33 TCGA-BR-4370-01 11 66102588 66102588 G - RIN1 Frame_Shift_Del p.L228Cfs*6 0.09 TCGA-BR-4370-01 11 66330670 66330670 A G CTSF 3'Flank 0.17 TCGA-BR-4370-01 11 66466195 66466195 C T SPTBN2 Missense_Mutation p.R1310H 0.11 tolerated(0.1) benign(0.434) TCGA-BR-4370-01 11 68341618 68341618 C T PPP6R3 Missense_Mutation p.T462M 0.16 deleterious(0) possibly_damaging(0.818) TCGA-BR-4370-01 11 68574954 68574954 C T CPT1A Missense_Mutation p.R145H 0.13 tolerated(0.55) benign(0.008) TCGA-BR-4370-01 11 71174487 71174487 G A NADSYN1 Missense_Mutation p.M91I 0.16 tolerated(0.4) benign(0.047) TCGA-BR-4370-01 11 71850856 71850856 G A FOLR3 Missense_Mutation p.R282H 0.22 tolerated(0.83) benign(0.008) TCGA-BR-4370-01 11 72083976 72083976 G A CLPB Silent p.P243P 0.23 TCGA-BR-4370-01 11 73105600 73105600 G A RELT Silent p.S289S 0.14 TCGA-BR-4370-01 11 75852356 75852356 G A UVRAG Missense_Mutation p.E667K 0.19 deleterious_low_confidence(0.01) benign(0.386) TCGA-BR-4370-01 11 78380834 78380835 - G TENM4 Frame_Shift_Ins p.Y2186Lfs*10 0.21 TCGA-BR-4370-01 11 78381155 78381155 C T TENM4 Missense_Mutation p.A2079T 0.12 deleterious(0) probably_damaging(0.981) TCGA-BR-4370-01 11 788588 788588 C T CEND1 5'UTR 0.05 TCGA-BR-4370-01 11 799981 799981 C - PIDD Frame_Shift_Del p.A770Lfs*8 0.20 TCGA-BR-4370-01 11 8122081 8122081 G A TUB Missense_Mutation p.R438Q 0.28 deleterious(0) probably_damaging(0.948) TCGA-BR-4370-01 11 8123105 8123105 G A TUB Missense_Mutation p.C542Y 0.19 deleterious(0) probably_damaging(0.991) TCGA-BR-4370-01 11 85418474 85418474 G A SYTL2 Missense_Mutation p.R1039W 0.19 deleterious(0) probably_damaging(1) TCGA-BR-4370-01 11 8715470 8715470 C T ST5 3'UTR 0.18 TCGA-BR-4370-01 11 9007341 9007341 C T NRIP3 Missense_Mutation p.R160Q 0.13 tolerated(0.26) possibly_damaging(0.787) TCGA-BR-4370-01 11 92703053 92703053 C T MTNR1B Silent p.D54D 0.10 TCGA-BR-4370-01 11 95516236 95516236 G A FAM76B Missense_Mutation p.H186Y 0.20 tolerated(0.17) benign(0.009) TCGA-BR-4370-01 11 993321 993321 A G AP2A2 Missense_Mutation p.K497R 0.12 deleterious(0.03) possibly_damaging(0.606) TCGA-BR-4370-01 12 100774527 100774527 A T SLC17A8 Missense_Mutation p.E50D 0.35 tolerated(0.1) possibly_damaging(0.496) TCGA-BR-4370-01 12 1017928 1017928 C - WNK1 Frame_Shift_Del p.P2375Qfs*15 0.14 TCGA-BR-4370-01 12 105467707 105467707 C T ALDH1L2 Missense_Mutation p.R42H 0.37 deleterious_low_confidence(0.02) possibly_damaging(0.787) TCGA-BR-4370-01 12 111801241 111801241 C T FAM109A Silent p.A10A 0.37 TCGA-BR-4370-01 12 112600859 112600860 - G HECTD4 Frame_Shift_Ins p.D4224Rfs*44 0.36 TCGA-BR-4370-01 12 112622701 112622701 C T HECTD4 Missense_Mutation p.A3211T 0.38 benign(0.381) TCGA-BR-4370-01 12 114804092 114804092 A G TBX5 Missense_Mutation p.L287S 0.41 tolerated(0.12) benign(0.295) TCGA-BR-4370-01 12 120530903 120530903 C T CCDC64 Missense_Mutation p.R554W 0.25 deleterious(0) possibly_damaging(0.886) TCGA-BR-4370-01 12 123444274 123444274 G T ABCB9 Missense_Mutation p.S170Y 0.34 deleterious(0) possibly_damaging(0.726) TCGA-BR-4370-01 12 130898786 130898786 C T RIMBP2 Missense_Mutation p.E846K 0.40 tolerated(0.15) benign(0.21) TCGA-BR-4370-01 12 132237851 132237851 C T SFSWAP Missense_Mutation p.P422L 0.21 tolerated(0.05) possibly_damaging(0.517) TCGA-BR-4370-01 12 133304630 133304630 G A ANKLE2 Missense_Mutation p.S868L 0.23 tolerated(0.11) possibly_damaging(0.536) TCGA-BR-4370-01 12 15637007 15637007 A G PTPRO Missense_Mutation p.K59E 0.21 deleterious_low_confidence(0) benign(0.063) TCGA-BR-4370-01 12 16047015 16047015 A - STRAP Frame_Shift_Del p.A149Lfs*26 0.25 TCGA-BR-4370-01 12 19410380 19410381 - A PLEKHA5 Frame_Shift_Ins p.V152Sfs*3 0.23 TCGA-BR-4370-01 12 19615474 19615474 C T AEBP2 Silent p.S234S 0.17 TCGA-BR-4370-01 12 2800256 2800256 C T CACNA1C Missense_Mutation p.A2151V 0.20 tolerated_low_confidence(0.49) benign(0.021) TCGA-BR-4370-01 12 2929276 2929276 T C ITFG2 Missense_Mutation p.V144A 0.16 deleterious(0) benign(0.289) TCGA-BR-4370-01 12 33592482 33592483 - T SYT10 5'UTR 0.15 TCGA-BR-4370-01 12 3678673 3678673 G A PRMT8 Missense_Mutation p.A219T 0.18 deleterious(0.02) possibly_damaging(0.471) TCGA-BR-4370-01 12 3921503 3921503 C T PARP11 Missense_Mutation p.R268Q 0.11 tolerated(0.29) benign(0.001) TCGA-BR-4370-01 12 4553300 4553300 G A FGF6 Missense_Mutation p.T150M 0.23 deleterious(0) probably_damaging(0.999) TCGA-BR-4370-01 12 46211654 46211654 C T ARID2 Missense_Mutation p.A207V 0.16 deleterious(0.03) possibly_damaging(0.673) TCGA-BR-4370-01 12 46230382 46230382 A T ARID2 Missense_Mutation p.D239V 0.26 deleterious(0) probably_damaging(0.929) TCGA-BR-4370-01 12 48367966 48367966 T C COL2A1 Missense_Mutation p.K1408R 0.18 unknown(0) TCGA-BR-4370-01 12 49420289 49420289 G A KMT2D Missense_Mutation p.R5154W 0.23 unknown(0) TCGA-BR-4370-01 12 49433849 49433849 G A KMT2D Silent p.P2568P 0.10 TCGA-BR-4370-01 12 49908349 49908349 G T SPATS2 Missense_Mutation p.R284L 0.11 deleterious(0.02) probably_damaging(1) TCGA-BR-4370-01 12 49918545 49918545 G A SPATS2 Missense_Mutation p.A398T 0.18 tolerated(0.77) benign(0.005) TCGA-BR-4370-01 12 50041505 50041505 C T FMNL3 Missense_Mutation p.R920Q 0.18 deleterious(0) probably_damaging(0.975) TCGA-BR-4370-01 12 5153999 5153999 G A KCNA5 Missense_Mutation p.R229H 0.19 tolerated(0.09) possibly_damaging(0.563) TCGA-BR-4370-01 12 52448715 52448715 C A NR4A1 Missense_Mutation p.S214R 0.36 tolerated(0.28) benign(0.102) TCGA-BR-4370-01 12 52450996 52450996 G A NR4A1 Silent p.L451L 0.23 TCGA-BR-4370-01 12 53091532 53091532 G A KRT77 Missense_Mutation p.A231V 0.40 deleterious(0.01) possibly_damaging(0.507) TCGA-BR-4370-01 12 53189685 53189685 C T KRT3 Missense_Mutation p.G48R 0.33 tolerated(0.07) unknown(0) TCGA-BR-4370-01 12 53457026 53457026 C T TENC1 Missense_Mutation p.T1336M 0.15 deleterious(0.01) benign(0.323) TCGA-BR-4370-01 12 53565628 53565628 A - CSAD Intron 0.25 TCGA-BR-4370-01 12 56478927 56478927 G A ERBB3 Missense_Mutation p.S128N 0.39 tolerated(0.62) benign(0.167) TCGA-BR-4370-01 12 56492521 56492521 A G ERBB3 Intron 0.17 TCGA-BR-4370-01 12 56505000 56505000 G A PA2G4 Silent p.L324L 0.38 TCGA-BR-4370-01 12 56514991 56514991 C - ZC3H10 Frame_Shift_Del p.P217Lfs*24 0.19 TCGA-BR-4370-01 12 56721843 56721843 G A PAN2 Missense_Mutation p.T196M 0.30 tolerated(0.09) benign(0.075) TCGA-BR-4370-01 12 56995599 56995599 G T BAZ2A Missense_Mutation p.L1270M 0.08 deleterious(0.04) probably_damaging(0.998) TCGA-BR-4370-01 12 57663593 57663593 T C R3HDM2 Missense_Mutation p.H496R 0.18 tolerated(0.09) benign(0.147) TCGA-BR-4370-01 12 60169112 60169112 T - SLC16A7 Frame_Shift_Del p.F347Lfs*53 0.40 TCGA-BR-4370-01 12 64196138 64196138 C T TMEM5 Silent p.P232P 0.19 TCGA-BR-4370-01 12 6776956 6776956 G A ZNF384 Missense_Mutation p.T553M 0.20 deleterious(0) possibly_damaging(0.791) TCGA-BR-4370-01 12 6933721 6933721 G - GPR162 Frame_Shift_Del p.G221Vfs*71 0.27 TCGA-BR-4370-01 12 69656202 69656202 C T CPSF6 Nonsense_Mutation p.R507* 0.27 TCGA-BR-4370-01 12 71314284 71314284 G A PTPRR 5'UTR 0.31 TCGA-BR-4370-01 12 7463150 7463150 C T ACSM4 Missense_Mutation p.P143L 0.24 deleterious(0) probably_damaging(0.979) TCGA-BR-4370-01 12 81101691 81101691 C - MYF6 Frame_Shift_Del p.P66Rfs*13 0.26 TCGA-BR-4370-01 12 85546106 85546106 T A LRRIQ1 Missense_Mutation p.S1460T 0.35 deleterious(0.01) probably_damaging(0.943) TCGA-BR-4370-01 12 90020290 90020290 T - ATP2B1 Frame_Shift_Del p.K357Rfs*23 0.32 TCGA-BR-4370-01 12 94976112 94976112 G T TMCC3 Missense_Mutation p.A94E 0.34 deleterious(0) probably_damaging(1) TCGA-BR-4370-01 12 97084978 97084978 C A C12orf55 Missense_Mutation p.L2052I 0.37 tolerated(1) benign(0.002) TCGA-BR-4370-01 12 9847427 9847427 C T CLEC2D 3'UTR 0.16 TCGA-BR-4370-01 13 100191740 100191740 C - TM9SF2 Frame_Shift_Del p.M255Wfs*3 0.22 TCGA-BR-4370-01 13 103289546 103289546 G A TPP2 Missense_Mutation p.R598H 0.16 deleterious(0) possibly_damaging(0.875) TCGA-BR-4370-01 13 108518636 108518636 C G FAM155A Missense_Mutation p.W103C 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.77) TCGA-BR-4370-01 13 111156323 111156324 - C COL4A2 Frame_Shift_Ins p.G1426Rfs*30 0.13 TCGA-BR-4370-01 13 113439565 113439565 G A ATP11A Silent p.S52S 0.17 TCGA-BR-4370-01 13 113699074 113699074 G A MCF2L Intron 0.18 TCGA-BR-4370-01 13 113793678 113793678 C T F10 Silent p.D88D 0.21 TCGA-BR-4370-01 13 114292018 114292018 C T TFDP1 Intron 0.17 TCGA-BR-4370-01 13 114525103 114525103 G A GAS6 Silent p.C570C 0.14 TCGA-BR-4370-01 13 24234605 24234605 C T TNFRSF19 Missense_Mutation p.R238C 0.27 deleterious(0.01) possibly_damaging(0.471) TCGA-BR-4370-01 13 25487066 25487066 C T CENPJ Missense_Mutation p.R33H 0.21 tolerated(0.12) benign(0.058) TCGA-BR-4370-01 13 26621193 26621193 C T SHISA2 Missense_Mutation p.V116M 0.15 deleterious(0.01) probably_damaging(1) TCGA-BR-4370-01 13 29599208 29599208 C T MTUS2 Missense_Mutation p.R135W 0.11 tolerated(0.15) benign(0.004) TCGA-BR-4370-01 13 32792901 32792901 C A FRY Silent p.I1566I 0.13 TCGA-BR-4370-01 13 33338669 33338669 C T PDS5B Silent p.Y1187Y 0.13 TCGA-BR-4370-01 13 33344618 33344618 A G PDS5B Silent p.E1328E 0.16 TCGA-BR-4370-01 13 33590992 33590992 G A KL Silent p.A138A 0.19 TCGA-BR-4370-01 13 37269458 37269458 C T SERTM1 Silent p.S81S 0.20 TCGA-BR-4370-01 13 46658416 46658416 A - CPB2 Frame_Shift_Del p.F71Lfs*2 0.26 TCGA-BR-4370-01 13 49705293 49705293 T C FNDC3A Silent p.V91V 0.20 TCGA-BR-4370-01 13 50057691 50057691 A - SETDB2 Frame_Shift_Del p.M506Wfs*24 0.24 TCGA-BR-4370-01 13 73369627 73369627 A G PIBF1 Missense_Mutation p.T162A 0.23 deleterious(0.03) benign(0.014) TCGA-BR-4370-01 13 77672645 77672645 G A MYCBP2 Missense_Mutation p.R2844C 0.21 probably_damaging(0.994) TCGA-BR-4370-01 13 77714270 77714270 G A MYCBP2 Missense_Mutation p.A2439V 0.16 probably_damaging(0.914) TCGA-BR-4370-01 13 77779485 77779485 G T MYCBP2 Nonsense_Mutation p.S1212* 0.22 TCGA-BR-4370-01 13 77807400 77807400 T C MYCBP2 Splice_Site p.X839_splice 0.22 TCGA-BR-4370-01 13 84454312 84454312 G A SLITRK1 Missense_Mutation p.A444V 0.18 tolerated(0.5) benign(0.001) TCGA-BR-4370-01 13 84455675 84455675 C T SLITRK1 5'UTR 0.24 TCGA-BR-4370-01 13 92003501 92003501 T C MIR17HG RNA 0.19 TCGA-BR-4370-01 13 96589280 96589280 A G UGGT2 Silent p.G625G 0.20 TCGA-BR-4370-01 13 97999281 97999281 C T MBNL2 Missense_Mutation p.A255V 0.39 deleterious(0.03) possibly_damaging(0.651) TCGA-BR-4370-01 13 98664543 98664543 C T IPO5 Missense_Mutation p.T718I 0.18 tolerated(0.16) benign(0.222) TCGA-BR-4370-01 13 99481978 99481978 G A DOCK9 Silent p.D1533D 0.15 TCGA-BR-4370-01 14 100801346 100801346 C T WARS Missense_Mutation p.G428S 0.14 deleterious(0.04) probably_damaging(1) TCGA-BR-4370-01 14 101522631 101522631 G A MIR323B RNA 0.29 TCGA-BR-4370-01 14 102026643 102026643 G A DIO3 5'Flank 0.21 TCGA-BR-4370-01 14 102476416 102476416 T - DYNC1H1 Frame_Shift_Del p.F2073Lfs*21 0.22 TCGA-BR-4370-01 14 104201496 104201496 C T PPP1R13B Missense_Mutation p.A1090T 0.16 deleterious(0) probably_damaging(0.999) TCGA-BR-4370-01 14 104206432 104206432 G - PPP1R13B Frame_Shift_Del p.P774Lfs*97 0.25 TCGA-BR-4370-01 14 105414292 105414292 C T AHNAK2 Missense_Mutation p.G2499D 0.17 probably_damaging(0.995) TCGA-BR-4370-01 14 105685344 105685344 C A BRF1 Missense_Mutation p.K502N 0.22 deleterious(0.01) probably_damaging(0.936) TCGA-BR-4370-01 14 105739058 105739058 G A BRF1 Missense_Mutation p.H147Y 0.27 deleterious(0) possibly_damaging(0.85) TCGA-BR-4370-01 14 106586229 106586229 A G IGHV3-13 Missense_Mutation p.F86L 0.22 deleterious_low_confidence(0.03) possibly_damaging(0.529) TCGA-BR-4370-01 14 20850088 20850088 C T TEP1 Missense_Mutation p.V1470I 0.21 tolerated(0.06) benign(0.027) TCGA-BR-4370-01 14 22971257 22971257 A G TRAJ38 Silent p.T15T 0.04 TCGA-BR-4370-01 14 23072897 23072897 C T ABHD4 Missense_Mutation p.R185C 0.22 tolerated(0.11) probably_damaging(0.959) TCGA-BR-4370-01 14 23846299 23846299 C A CMTM5 5'UTR 0.16 TCGA-BR-4370-01 14 24546805 24546806 - C CPNE6 Frame_Shift_Ins p.S516Lfs*10 0.27 TCGA-BR-4370-01 14 24632182 24632182 C A IRF9 Missense_Mutation p.A63E 0.22 deleterious(0) probably_damaging(0.983) TCGA-BR-4370-01 14 24805284 24805284 G A RIPK3 3'UTR 0.34 TCGA-BR-4370-01 14 34243648 34243648 C - NPAS3 Frame_Shift_Del p.P321Lfs*17 0.25 TCGA-BR-4370-01 14 34269189 34269189 G A NPAS3 Missense_Mutation p.R559H 0.14 tolerated(0.36) possibly_damaging(0.84) TCGA-BR-4370-01 14 36302264 36302264 C T BRMS1L Missense_Mutation p.P105L 0.19 deleterious(0) probably_damaging(1) TCGA-BR-4370-01 14 36304094 36304094 G A BRMS1L Missense_Mutation p.E136K 0.14 tolerated(0.09) possibly_damaging(0.7) TCGA-BR-4370-01 14 38295439 38295439 A G TTC6 Missense_Mutation p.I1672V 0.16 tolerated(0.72) benign(0.421) TCGA-BR-4370-01 14 39514487 39514487 A - SEC23A Frame_Shift_Del p.F593Lfs*20 0.21 TCGA-BR-4370-01 14 45605364 45605364 G A FANCM Missense_Mutation p.A44T 0.16 tolerated(0.12) benign(0.035) TCGA-BR-4370-01 14 47314993 47314993 C T MDGA2 Missense_Mutation p.A989T 0.14 tolerated(0.71) benign(0.001) TCGA-BR-4370-01 14 50122404 50122404 G A POLE2 Missense_Mutation p.R305C 0.15 deleterious(0) benign(0.021) TCGA-BR-4370-01 14 53619421 53619421 G C DDHD1 Silent p.G132G 0.19 TCGA-BR-4370-01 14 56757067 56757067 G - PELI2 Frame_Shift_Del p.G198Afs*73 0.22 TCGA-BR-4370-01 14 59113480 59113480 C T DACT1 Silent p.Y713Y 0.21 TCGA-BR-4370-01 14 59950671 59950671 G A L3HYPDH Missense_Mutation p.P122S 0.18 tolerated(0.12) benign(0.035) TCGA-BR-4370-01 14 60923730 60923730 C T C14orf39 Silent p.T421T 0.15 TCGA-BR-4370-01 14 64564782 64564784 AAG - SYNE2 In_Frame_Del p.E4076del 0.34 TCGA-BR-4370-01 14 64954669 64954669 G A ZBTB25 Missense_Mutation p.R94C 0.23 deleterious(0) probably_damaging(1) TCGA-BR-4370-01 14 65008770 65008770 G A HSPA2 Silent p.P401P 0.19 TCGA-BR-4370-01 14 68129194 68129194 C T VTI1B Silent p.T58T 0.11 TCGA-BR-4370-01 14 73718431 73718431 C T PAPLN Missense_Mutation p.R217W 0.20 tolerated(0.05) benign(0.005) TCGA-BR-4370-01 14 74009849 74009849 C T ACOT1 Silent p.V252V 0.23 TCGA-BR-4370-01 14 74409118 74409118 C T FAM161B Missense_Mutation p.R472H 0.05 tolerated(0.31) benign(0.004) TCGA-BR-4370-01 14 80963818 80963818 T - CEP128 3'UTR 0.22 TCGA-BR-4370-01 14 89075670 89075670 A G ZC3H14 Missense_Mutation p.Y643C 0.16 deleterious(0) probably_damaging(0.914) TCGA-BR-4370-01 14 89878534 89878534 G - FOXN3 Frame_Shift_Del p.P96Hfs*42 0.27 TCGA-BR-4370-01 14 94088364 94088364 G A UNC79 Silent p.S1418S 0.24 TCGA-BR-4370-01 14 95688092 95688092 G A CLMN Missense_Mutation p.S87L 0.23 deleterious(0) probably_damaging(0.998) TCGA-BR-4370-01 14 96986562 96986562 G A PAPOLA Missense_Mutation p.R60H 0.22 tolerated(1) benign(0.002) TCGA-BR-4370-01 15 22382983 22382983 C T OR4N4 Missense_Mutation p.P171S 0.03 deleterious(0.01) possibly_damaging(0.562) TCGA-BR-4370-01 15 25227367 25227367 T - SNRPN 3'Flank 0.29 TCGA-BR-4370-01 15 25425477 25425477 G A SNORD115-6 5'Flank 0.25 TCGA-BR-4370-01 15 25476032 25476033 - A SNORD115-33 RNA 0.23 TCGA-BR-4370-01 15 26793063 26793063 T C GABRB3 Silent p.S433S 0.16 TCGA-BR-4370-01 15 26812789 26812789 C T GABRB3 Silent p.T258T 0.20 TCGA-BR-4370-01 15 28474714 28474714 C A HERC2 Missense_Mutation p.G1671V 0.19 benign(0.09) TCGA-BR-4370-01 15 28510807 28510807 C T HERC2 Silent p.A609A 0.16 TCGA-BR-4370-01 15 31329989 31329989 T - TRPM1 Frame_Shift_Del p.K849Nfs*60 0.22 TCGA-BR-4370-01 15 32988792 32988792 G A SCG5 Silent p.E207E 0.18 TCGA-BR-4370-01 15 34072445 34072445 G A RYR3 Silent p.S3057S 0.21 TCGA-BR-4370-01 15 34647969 34647969 C - NUTM1 Frame_Shift_Del p.S561Afs*30 0.26 TCGA-BR-4370-01 15 40630070 40630070 G A C15orf52 Missense_Mutation p.P224S 0.25 tolerated(0.18) possibly_damaging(0.604) TCGA-BR-4370-01 15 41066555 41066555 G A DNAJC17 Missense_Mutation p.A227V 0.19 tolerated(0.05) possibly_damaging(0.858) TCGA-BR-4370-01 15 41227195 41227195 G A DLL4 Missense_Mutation p.G374R 0.16 deleterious(0) probably_damaging(0.987) TCGA-BR-4370-01 15 42042288 42042288 G A MGA Silent p.K2161K 0.22 TCGA-BR-4370-01 15 42116010 42116010 C T MAPKBP1 Missense_Mutation p.P1328S 0.18 tolerated(0.16) benign(0.004) TCGA-BR-4370-01 15 42570682 42570682 G A GANC Missense_Mutation p.R32H 0.14 probably_damaging(0.999) TCGA-BR-4370-01 15 42717097 42717097 C T ZNF106 Missense_Mutation p.D1686N 0.24 deleterious(0) probably_damaging(0.996) TCGA-BR-4370-01 15 43023871 43023871 G - CDAN1 Frame_Shift_Del p.T563Pfs*29 0.26 TCGA-BR-4370-01 15 43925050 43925050 C A CATSPER2 Nonsense_Mutation p.E421* 0.25 TCGA-BR-4370-01 15 45008499 45008499 T - B2M Intron 0.23 TCGA-BR-4370-01 15 45401073 45401073 G T DUOX2 Missense_Mutation p.L438M 0.21 deleterious(0) probably_damaging(1) TCGA-BR-4370-01 15 53992122 53992122 A G WDR72 Silent p.I530I 0.17 TCGA-BR-4370-01 15 55621921 55621922 - T PIGB Frame_Shift_Ins p.C177Lfs*79 0.19 TCGA-BR-4370-01 15 57918078 57918078 C A GCOM1 Silent p.S171S 0.12 TCGA-BR-4370-01 15 58287308 58287308 C T ALDH1A2 Missense_Mutation p.E175K 0.18 deleterious(0) possibly_damaging(0.781) TCGA-BR-4370-01 15 58357786 58357786 C T ALDH1A2 Silent p.A21A 0.26 TCGA-BR-4370-01 15 63966684 63966684 C T HERC1 Missense_Mutation p.R2568Q 0.13 benign(0.255) TCGA-BR-4370-01 15 74473191 74473191 G A STRA6 Missense_Mutation p.A630V 0.19 tolerated(0.25) benign(0.007) TCGA-BR-4370-01 15 74912421 74912421 G A CLK3 Missense_Mutation p.R223Q 0.23 tolerated(0.12) benign(0.013) TCGA-BR-4370-01 15 75649170 75649170 C G MAN2C1 Missense_Mutation p.G891A 0.15 deleterious(0.01) probably_damaging(1) TCGA-BR-4370-01 15 75980305 75980305 C T CSPG4 Missense_Mutation p.R1034Q 0.22 tolerated(1) benign(0.001) TCGA-BR-4370-01 15 75980366 75980366 C T CSPG4 Missense_Mutation p.V1014M 0.18 deleterious(0.02) possibly_damaging(0.613) TCGA-BR-4370-01 15 76225165 76225165 G A FBXO22 Missense_Mutation p.A312T 0.15 deleterious(0.01) possibly_damaging(0.732) TCGA-BR-4370-01 15 76430103 76430103 G A C15orf27 Missense_Mutation p.E32K 0.17 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-BR-4370-01 15 76632885 76632885 G A ISL2 Silent p.Q260Q 0.19 TCGA-BR-4370-01 15 78219094 78219094 A T RP11-114H24.7 3'Flank 0.22 TCGA-BR-4370-01 15 78295700 78295700 C T TBC1D2B Missense_Mutation p.V841I 0.20 tolerated(0.63) probably_damaging(0.999) TCGA-BR-4370-01 15 79603625 79603625 C T TMED3 Silent p.L12L 0.29 TCGA-BR-4370-01 15 79748713 79748713 A G KIAA1024 Missense_Mutation p.N75S 0.05 tolerated(0.13) possibly_damaging(0.546) TCGA-BR-4370-01 15 81046586 81046586 G A ABHD17C Missense_Mutation p.E289K 0.15 deleterious(0.02) possibly_damaging(0.578) TCGA-BR-4370-01 15 82443816 82443816 A G EFTUD1 Silent p.G993G 0.16 TCGA-BR-4370-01 15 86286871 86286871 G T AKAP13 Missense_Mutation p.R2740L 0.16 tolerated(0.06) possibly_damaging(0.835) TCGA-BR-4370-01 15 86288078 86288078 C T AKAP13 3'UTR 0.29 TCGA-BR-4370-01 15 89074383 89074383 C T DET1 Missense_Mutation p.R196Q 0.14 tolerated(0.2) benign(0.284) TCGA-BR-4370-01 15 89744977 89744977 C T ABHD2 3'UTR 0.21 TCGA-BR-4370-01 15 90611774 90611774 G A ZNF710 Missense_Mutation p.G469S 0.22 deleterious(0.03) probably_damaging(0.999) TCGA-BR-4370-01 15 92459652 92459652 G A SLCO3A1 Missense_Mutation p.D204N 0.16 tolerated(0.09) probably_damaging(0.999) TCGA-BR-4370-01 16 16263538 16263538 C T ABCC6 Missense_Mutation p.R987H 0.18 deleterious(0) probably_damaging(0.951) TCGA-BR-4370-01 16 1706239 1706239 C - CRAMP1L Frame_Shift_Del p.E497Rfs*5 0.41 TCGA-BR-4370-01 16 1867176 1867176 G - HAGH Frame_Shift_Del p.P213Rfs*61 0.28 TCGA-BR-4370-01 16 1994706 1994706 C T RPL3L 3'UTR 0.20 TCGA-BR-4370-01 16 2025196 2025196 G A TBL3 Missense_Mutation p.R215H 0.16 deleterious(0) probably_damaging(0.999) TCGA-BR-4370-01 16 20357449 20357449 G A UMOD Missense_Mutation p.T394M 0.11 tolerated(0.18) benign(0.082) TCGA-BR-4370-01 16 20796389 20796389 C T ACSM3 Missense_Mutation p.T368M 0.21 deleterious(0.01) possibly_damaging(0.838) TCGA-BR-4370-01 16 20873912 20873912 G A DCUN1D3 5'UTR 0.23 TCGA-BR-4370-01 16 21117878 21117878 T C DNAH3 Silent p.K739K 0.16 TCGA-BR-4370-01 16 2150168 2150168 C T PKD1 Silent p.A3237A 0.13 TCGA-BR-4370-01 16 21721321 21721321 C - OTOA Frame_Shift_Del p.E408Rfs*58 0.29 TCGA-BR-4370-01 16 24185846 24185846 G A PRKCB Missense_Mutation p.A447T 0.14 deleterious(0.02) possibly_damaging(0.806) TCGA-BR-4370-01 16 24580149 24580149 G A RBBP6 Missense_Mutation p.R713H 0.21 tolerated_low_confidence(0.16) unknown(0) TCGA-BR-4370-01 16 24583099 24583099 A C RBBP6 Missense_Mutation p.K1571T 0.21 deleterious_low_confidence(0) benign(0.184) TCGA-BR-4370-01 16 2546755 2546755 G A RP11-20I23.1 Silent p.S202S 0.18 TCGA-BR-4370-01 16 2809396 2809396 C T SRRM2 Nonsense_Mutation p.R245* 0.18 TCGA-BR-4370-01 16 2821616 2821616 G - TCEB2 Intron 0.25 TCGA-BR-4370-01 16 28855746 28855746 C T TUFM Missense_Mutation p.V271I 0.17 tolerated(1) benign(0.001) TCGA-BR-4370-01 16 29825015 29825016 - C PRRT2 Frame_Shift_Ins p.R217Pfs*8 0.33 TCGA-BR-4370-01 16 3021597 3021597 C T PAQR4 Missense_Mutation p.S157L 0.22 deleterious(0) possibly_damaging(0.816) TCGA-BR-4370-01 16 30507511 30507511 G A ITGAL Missense_Mutation p.G533S 0.13 deleterious(0) probably_damaging(0.981) TCGA-BR-4370-01 16 30566999 30566999 G A ZNF764 Missense_Mutation p.S248L 0.33 tolerated(0.05) benign(0.327) TCGA-BR-4370-01 16 30594406 30594406 G A ZNF785 Silent p.P231P 0.26 TCGA-BR-4370-01 16 30999391 30999391 G A HSD3B7 Missense_Mutation p.V333I 0.17 tolerated(0.16) possibly_damaging(0.754) TCGA-BR-4370-01 16 31235536 31235536 G A TRIM72 Silent p.A298A 0.23 TCGA-BR-4370-01 16 3139113 3139113 G A ZSCAN10 Silent p.H719H 0.24 TCGA-BR-4370-01 16 31885274 31885274 C A ZNF267 5'UTR 0.18 TCGA-BR-4370-01 16 334505 334505 C T PDIA2 Silent p.R106R 0.23 TCGA-BR-4370-01 16 3712984 3712984 C T TRAP1 Intron 0.15 TCGA-BR-4370-01 16 461481 461481 C T DECR2 Missense_Mutation p.T261M 0.22 deleterious(0) probably_damaging(0.995) TCGA-BR-4370-01 16 47294490 47294490 G A ITFG1 Missense_Mutation p.A396V 0.16 tolerated(0.17) possibly_damaging(0.763) TCGA-BR-4370-01 16 48337105 48337105 C T LONP2 Missense_Mutation p.R562C 0.26 deleterious(0) probably_damaging(1) TCGA-BR-4370-01 16 4861191 4861191 T C GLYR1 Missense_Mutation p.M523V 0.19 tolerated(0.44) benign(0.03) TCGA-BR-4370-01 16 49671946 49671946 C T ZNF423 Missense_Mutation p.D373N 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-BR-4370-01 16 49672418 49672418 G T ZNF423 Silent p.T215T 0.10 TCGA-BR-4370-01 16 50325704 50325704 C T ADCY7 Missense_Mutation p.R145W 0.18 tolerated(0.17) benign(0.002) TCGA-BR-4370-01 16 50745284 50745284 T C NOD2 Missense_Mutation p.F488L 0.22 tolerated(0.17) benign(0.014) TCGA-BR-4370-01 16 53272439 53272439 G T CHD9 Missense_Mutation p.G940W 0.18 probably_damaging(0.999) TCGA-BR-4370-01 16 55363164 55363164 C T IRX6 Missense_Mutation p.A425V 0.25 tolerated(0.08) benign(0.015) TCGA-BR-4370-01 16 57092032 57092032 C T NLRC5 Missense_Mutation p.P1268S 0.26 tolerated(0.15) benign(0) TCGA-BR-4370-01 16 57687898 57687898 G A GPR56 Silent p.Q207Q 0.19 TCGA-BR-4370-01 16 58589340 58589340 A - CNOT1 Frame_Shift_Del p.Q904Sfs*9 0.22 TCGA-BR-4370-01 16 61689517 61689517 C T CDH8 Missense_Mutation p.S588N 0.24 deleterious(0.01) possibly_damaging(0.85) TCGA-BR-4370-01 16 67180989 67180989 C - C16orf70 Frame_Shift_Del p.R411Gfs*6 0.19 TCGA-BR-4370-01 16 67221273 67221273 G T EXOC3L1 Missense_Mutation p.P299T 0.17 deleterious(0) probably_damaging(0.99) TCGA-BR-4370-01 16 67517002 67517002 G A AGRP Missense_Mutation p.R48W 0.18 deleterious(0.01) possibly_damaging(0.802) TCGA-BR-4370-01 16 67683500 67683500 C A RLTPR Missense_Mutation p.L633M 0.25 deleterious(0) probably_damaging(0.999) TCGA-BR-4370-01 16 67709348 67709348 C A GFOD2 Nonsense_Mutation p.G290* 0.23 TCGA-BR-4370-01 16 67918763 67918763 T C NRN1L 5'UTR 0.06 TCGA-BR-4370-01 16 68191771 68191771 G A NFATC3 Splice_Site p.X468_splice 0.11 TCGA-BR-4370-01 16 69786254 69786254 T C NOB1 Missense_Mutation p.T73A 0.21 deleterious(0.01) probably_damaging(0.995) TCGA-BR-4370-01 16 70708296 70708296 G A MTSS1L Silent p.S322S 0.18 TCGA-BR-4370-01 16 731592 731592 G A STUB1 Silent p.A171A 0.25 TCGA-BR-4370-01 16 735692 735692 C T WDR24 Silent p.P555P 0.13 TCGA-BR-4370-01 16 75263554 75263556 AGG - BCAR1 In_Frame_Del p.L869del 0.23 TCGA-BR-4370-01 16 75513450 75513450 G A CHST6 Missense_Mutation p.R93C 0.16 deleterious(0) probably_damaging(1) TCGA-BR-4370-01 16 80666968 80666968 G A CDYL2 Missense_Mutation p.T261M 0.16 deleterious(0) probably_damaging(1) TCGA-BR-4370-01 16 81155214 81155214 G A PKD1L2 RNA 0.18 TCGA-BR-4370-01 16 81155261 81155261 C T PKD1L2 RNA 0.12 TCGA-BR-4370-01 16 87636864 87636864 G A JPH3 Missense_Mutation p.E38K 0.20 deleterious(0) benign(0.05) TCGA-BR-4370-01 16 88105722 88105722 G A BANP Silent p.A464A 0.19 TCGA-BR-4370-01 16 88876484 88876484 T C APRT Missense_Mutation p.T132A 0.20 deleterious(0) probably_damaging(0.999) TCGA-BR-4370-01 16 89352563 89352563 T C ANKRD11 Missense_Mutation p.N259S 0.17 probably_damaging(0.973) TCGA-BR-4370-01 17 10546233 10546233 C T MYH3 Silent p.L497L 0.19 TCGA-BR-4370-01 17 12893457 12893457 C T ARHGAP44 Missense_Mutation p.S809L 0.18 deleterious_low_confidence(0) benign(0.017) TCGA-BR-4370-01 17 15554406 15554406 T C RP11-385D13.1 Missense_Mutation p.E173G 0.18 deleterious_low_confidence(0) benign(0.067) TCGA-BR-4370-01 17 15971388 15971388 G A NCOR1 Silent p.L1521L 0.16 TCGA-BR-4370-01 17 16068428 16068428 C T NCOR1 Silent p.S161S 0.08 TCGA-BR-4370-01 17 19263639 19263639 G - B9D1 Frame_Shift_Del p.T43Qfs*116 0.20 TCGA-BR-4370-01 17 1961719 1961719 G A HIC1 Missense_Mutation p.G598S 0.36 deleterious(0) probably_damaging(0.997) TCGA-BR-4370-01 17 19646567 19646567 G - ALDH3A1 Frame_Shift_Del p.M125Wfs*18 0.12 TCGA-BR-4370-01 17 2579901 2579901 G A PAFAH1B1 Splice_Site p.X334_splice 0.20 TCGA-BR-4370-01 17 26669336 26669336 C T TNFAIP1 Silent p.N194N 0.30 TCGA-BR-4370-01 17 26951282 26951282 C T KIAA0100 Missense_Mutation p.R1574Q 0.18 deleterious(0.01) benign(0.154) TCGA-BR-4370-01 17 29677244 29677244 A - NF1 Frame_Shift_Del p.K2456Nfs*33 0.16 TCGA-BR-4370-01 17 29683984 29683985 AG - NF1 Frame_Shift_Del p.R2583Dfs*12 0.20 TCGA-BR-4370-01 17 35298059 35298059 C T LHX1 Missense_Mutation p.R184C 0.20 deleterious(0) probably_damaging(0.996) TCGA-BR-4370-01 17 36869018 36869018 G A MLLT6 Silent p.P265P 0.16 TCGA-BR-4370-01 17 37686960 37686960 C T CDK12 Silent p.S1288S 0.20 TCGA-BR-4370-01 17 37864636 37864636 G A ERBB2 Silent p.L96L 0.18 TCGA-BR-4370-01 17 37868208 37868208 C T ERBB2 Missense_Mutation p.S310F 0.19 deleterious(0) probably_damaging(0.994) TCGA-BR-4370-01 17 38991373 38991373 T - TMEM99 Frame_Shift_Del p.L204Cfs*8 0.23 TCGA-BR-4370-01 17 39550390 39550390 C T KRT31 Missense_Mutation p.A377T 0.18 tolerated(0.31) benign(0.005) TCGA-BR-4370-01 17 39623344 39623344 G A KRT32 Silent p.S78S 0.23 TCGA-BR-4370-01 17 40125660 40125660 C T CNP Silent p.R328R 0.10 TCGA-BR-4370-01 17 40695053 40695053 T C NAGLU Silent p.T343T 0.12 TCGA-BR-4370-01 17 40815027 40815027 G A TUBG2 Missense_Mutation p.G146S 0.12 deleterious(0) probably_damaging(0.998) TCGA-BR-4370-01 17 40939467 40939467 C - WNK4 Frame_Shift_Del p.S552Vfs*109 0.37 TCGA-BR-4370-01 17 40939916 40939916 C T WNK4 Missense_Mutation p.S621L 0.25 deleterious(0.02) unknown(0) TCGA-BR-4370-01 17 40963563 40963564 - T BECN1 Intron 0.16 TCGA-BR-4370-01 17 42254234 42254234 G A ASB16 Missense_Mutation p.G233D 0.19 deleterious(0.03) probably_damaging(0.989) TCGA-BR-4370-01 17 42267869 42267869 C T TMUB2 Silent p.S201S 0.24 TCGA-BR-4370-01 17 43332952 43332952 G A SPATA32 Silent p.N199N 0.18 TCGA-BR-4370-01 17 44108963 44108963 C T KANSL1 Missense_Mutation p.R1066H 0.14 tolerated(0.09) probably_damaging(0.996) TCGA-BR-4370-01 17 4442961 4442961 C T MYBBP1A Missense_Mutation p.A1246T 0.21 tolerated(0.06) benign(0.331) TCGA-BR-4370-01 17 44827207 44827207 C T NSF Silent p.N659N 0.18 TCGA-BR-4370-01 17 45412714 45412715 - A EFCAB13 Frame_Shift_Ins p.I64Nfs*3 0.18 TCGA-BR-4370-01 17 45773500 45773500 G A TBKBP1 Missense_Mutation p.D8N 0.17 deleterious(0) benign(0.149) TCGA-BR-4370-01 17 4720531 4720531 G A PLD2 Missense_Mutation p.G598R 0.19 tolerated(0.19) benign(0.027) TCGA-BR-4370-01 17 47394293 47394293 G A ZNF652 Silent p.N265N 0.16 TCGA-BR-4370-01 17 4889556 4889556 G T CAMTA2 Missense_Mutation p.L11I 0.25 tolerated_low_confidence(0.21) benign(0.132) TCGA-BR-4370-01 17 48917876 48917876 C T WFIKKN2 Silent p.G409G 0.18 TCGA-BR-4370-01 17 4937566 4937566 G A SLC52A1 Missense_Mutation p.P73L 0.20 deleterious(0.02) benign(0.052) TCGA-BR-4370-01 17 5042569 5042569 C A USP6 Silent p.S366S 0.14 TCGA-BR-4370-01 17 54526505 54526505 C T ANKFN1 Silent p.L392L 0.17 TCGA-BR-4370-01 17 5486064 5486064 G A NLRP1 Missense_Mutation p.P125L 0.16 tolerated_low_confidence(0.09) benign(0.003) TCGA-BR-4370-01 17 56274340 56274340 G A EPX Missense_Mutation p.C281Y 0.15 deleterious(0) probably_damaging(1) TCGA-BR-4370-01 17 56399703 56399703 C T BZRAP1 Missense_Mutation p.R463Q 0.11 tolerated(1) benign(0.002) TCGA-BR-4370-01 17 61497863 61497863 C T TANC2 Missense_Mutation p.P1507L 0.18 deleterious_low_confidence(0) benign(0.008) TCGA-BR-4370-01 17 61574189 61574189 G A ACE Silent p.P1178P 0.18 TCGA-BR-4370-01 17 61907214 61907214 C T PSMC5 Missense_Mutation p.R57C 0.20 tolerated(0.08) benign(0.021) TCGA-BR-4370-01 17 62818141 62818141 T C RNU7-115P 3'Flank 0.17 TCGA-BR-4370-01 17 71282535 71282535 G A CDC42EP4 Silent p.R35R 0.17 TCGA-BR-4370-01 17 7128557 7128557 C T ACADVL 3'UTR 0.27 TCGA-BR-4370-01 17 7213109 7213109 G A EIF5A Missense_Mutation p.G82D 0.05 deleterious(0.02) possibly_damaging(0.837) TCGA-BR-4370-01 17 7224553 7224553 C T NEURL4 Missense_Mutation p.G1080S 0.17 tolerated(0.54) benign(0.001) TCGA-BR-4370-01 17 72353578 72353578 G A BTBD17 Missense_Mutation p.R219C 0.21 deleterious(0) probably_damaging(0.955) TCGA-BR-4370-01 17 7246793 7246793 G A ACAP1 Missense_Mutation p.R147H 0.23 tolerated(0.73) possibly_damaging(0.834) TCGA-BR-4370-01 17 73144759 73144759 G A HN1 Missense_Mutation p.R22W 0.25 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-BR-4370-01 17 73487842 73487842 G A KIAA0195 Missense_Mutation p.R486H 0.18 tolerated(0.38) benign(0.001) TCGA-BR-4370-01 17 73625157 73625158 TG - RECQL5 Frame_Shift_Del p.P782Rfs*10 0.12 TCGA-BR-4370-01 17 73658970 73658971 - T RECQL5 Frame_Shift_Ins p.P121Afs*38 0.23 TCGA-BR-4370-01 17 73761135 73761135 G A GALK1 Missense_Mutation p.P28L 0.21 deleterious(0) probably_damaging(1) TCGA-BR-4370-01 17 73840360 73840360 T C UNC13D Missense_Mutation p.K20R 0.15 deleterious_low_confidence(0.01) probably_damaging(0.993) TCGA-BR-4370-01 17 74001536 74001536 G A CDK3 3'UTR 0.18 TCGA-BR-4370-01 17 74005204 74005204 A G EVPL Missense_Mutation p.L1361P 0.19 deleterious(0) probably_damaging(0.999) TCGA-BR-4370-01 17 74714772 74714772 G A JMJD6 Intron 0.06 TCGA-BR-4370-01 17 74936837 74936837 G A MGAT5B Silent p.A594A 0.23 TCGA-BR-4370-01 17 75196655 75196655 G A SEC14L1 Silent p.T303T 0.22 TCGA-BR-4370-01 17 76116974 76116974 G T TMC6 Intron 0.15 TCGA-BR-4370-01 17 77078044 77078044 C T ENGASE Missense_Mutation p.R313W 0.18 deleterious(0.03) benign(0.299) TCGA-BR-4370-01 17 78972925 78972925 G T CHMP6 Missense_Mutation p.R193M 0.10 deleterious(0) benign(0.423) TCGA-BR-4370-01 17 7915631 7915631 G C GUCY2D Missense_Mutation p.W640S 0.17 deleterious(0) probably_damaging(0.996) TCGA-BR-4370-01 17 79164825 79164825 C T AZI1 Missense_Mutation p.R942Q 0.24 tolerated(0.06) benign(0.213) TCGA-BR-4370-01 17 79801885 79801885 G A P4HB 3'UTR 0.16 TCGA-BR-4370-01 17 80014563 80014563 C T GPS1 Missense_Mutation p.T432M 0.23 deleterious(0) probably_damaging(0.924) TCGA-BR-4370-01 17 8224243 8224243 C T ARHGEF15 Missense_Mutation p.R820C 0.19 deleterious(0) possibly_damaging(0.791) TCGA-BR-4370-01 17 8409746 8409746 G A MYH10 Silent p.D1092D 0.20 TCGA-BR-4370-01 17 8508243 8508243 A C MYH10 Missense_Mutation p.S135A 0.25 benign(0.109) TCGA-BR-4370-01 17 97063 97063 G A RPH3AL Missense_Mutation p.S151L 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-BR-4370-01 18 13049146 13049146 A - CEP192 Frame_Shift_Del p.T788Qfs*40 0.15 TCGA-BR-4370-01 18 13681933 13681933 T C FAM210A Silent p.V48V 0.19 TCGA-BR-4370-01 18 13746253 13746253 A - RNMT Frame_Shift_Del p.T394Hfs*19 0.20 TCGA-BR-4370-01 18 14757831 14757831 C A ANKRD30B Missense_Mutation p.A212D 0.06 deleterious(0) probably_damaging(0.999) TCGA-BR-4370-01 18 22804764 22804764 T C ZNF521 Missense_Mutation p.T1040A 0.17 tolerated(0.17) probably_damaging(0.993) TCGA-BR-4370-01 18 29040811 29040811 C T DSG3 Missense_Mutation p.R234C 0.18 tolerated(0.12) probably_damaging(0.912) TCGA-BR-4370-01 18 2922171 2922171 G A LPIN2 Missense_Mutation p.S734L 0.25 deleterious(0) probably_damaging(0.978) TCGA-BR-4370-01 18 29972872 29972872 G A GAREM Missense_Mutation p.P83L 0.15 deleterious(0) probably_damaging(1) TCGA-BR-4370-01 18 34647208 34647208 C T KIAA1328 Missense_Mutation p.A311V 0.18 deleterious(0.02) benign(0.012) TCGA-BR-4370-01 18 34854793 34854793 G A CELF4 Missense_Mutation p.A211V 0.20 deleterious(0.01) possibly_damaging(0.716) TCGA-BR-4370-01 18 3597045 3597045 T C DLGAP1 Intron 0.16 TCGA-BR-4370-01 18 40857246 40857246 T - SYT4 Frame_Shift_Del p.M1? 0.19 TCGA-BR-4370-01 18 42533199 42533200 - A SETBP1 Frame_Shift_Ins p.R1300Kfs*5 0.15 TCGA-BR-4370-01 18 46448019 46448019 C T SMAD7 Missense_Mutation p.R335H 0.14 deleterious(0) probably_damaging(0.998) TCGA-BR-4370-01 18 55027353 55027353 A G ST8SIA3 Missense_Mutation p.T330A 0.08 benign(0.109) TCGA-BR-4370-01 18 55365098 55365098 A G ATP8B1 Missense_Mutation p.F186L 0.08 tolerated(1) probably_damaging(0.994) TCGA-BR-4370-01 18 56246941 56246941 A - ALPK2 Frame_Shift_Del p.L356Yfs*2 0.30 TCGA-BR-4370-01 18 59483019 59483019 G A RNF152 3'UTR 0.21 TCGA-BR-4370-01 18 59828459 59828459 G T PIGN Missense_Mutation p.A43E 0.14 deleterious(0) probably_damaging(0.973) TCGA-BR-4370-01 18 6890442 6890442 T C ARHGAP28 Missense_Mutation p.L424S 0.12 deleterious(0) probably_damaging(0.994) TCGA-BR-4370-01 18 72775204 72775204 C T ZNF407 Missense_Mutation p.P1843S 0.13 tolerated(1) benign(0) TCGA-BR-4370-01 18 74607223 74607223 C A ZNF236 Missense_Mutation p.H556N 0.15 deleterious(0) probably_damaging(1) TCGA-BR-4370-01 18 74627612 74627612 C T ZNF236 Missense_Mutation p.A1022V 0.21 tolerated(0.06) probably_damaging(0.955) TCGA-BR-4370-01 18 76754839 76754839 G A SALL3 Missense_Mutation p.A950T 0.19 tolerated(0.12) probably_damaging(0.932) TCGA-BR-4370-01 18 77107847 77107847 C T ATP9B Silent p.H920H 0.18 TCGA-BR-4370-01 18 8394488 8394488 G A PTPRM Missense_Mutation p.R1408H 0.19 deleterious(0) probably_damaging(1) TCGA-BR-4370-01 19 10227489 10227491 CTC - EIF3G In_Frame_Del p.E194del 0.31 TCGA-BR-4370-01 19 10267172 10267172 G A DNMT1 Missense_Mutation p.H432Y 0.19 tolerated(0.33) benign(0.009) TCGA-BR-4370-01 19 11144113 11144113 G A SMARCA4 Missense_Mutation p.G1232S 0.21 possibly_damaging(0.797) TCGA-BR-4370-01 19 11217255 11217255 C T LDLR Missense_Mutation p.R237C 0.19 deleterious(0) benign(0.298) TCGA-BR-4370-01 19 11537032 11537032 G A CCDC151 Missense_Mutation p.R299C 0.09 tolerated(0.17) benign(0.031) TCGA-BR-4370-01 19 11598206 11598206 T C ZNF653 Missense_Mutation p.M358V 0.12 tolerated(1) benign(0.001) TCGA-BR-4370-01 19 12256707 12256707 C T ZNF625 Missense_Mutation p.R175H 0.25 tolerated(0.56) benign(0) TCGA-BR-4370-01 19 12461259 12461259 C T ZNF442 Silent p.K380K 0.16 TCGA-BR-4370-01 19 12829855 12829855 G A TNPO2 Nonsense_Mutation p.R105* 0.20 TCGA-BR-4370-01 19 12918305 12918305 C T RNASEH2A Silent p.G132G 0.23 TCGA-BR-4370-01 19 13988423 13988423 C T NANOS3 Missense_Mutation p.R121C 0.18 deleterious(0) possibly_damaging(0.854) TCGA-BR-4370-01 19 14507198 14507198 G A CD97 Missense_Mutation p.G131S 0.12 tolerated(1) benign(0.008) TCGA-BR-4370-01 19 15349730 15349730 G A BRD4 Missense_Mutation p.R1282C 0.23 benign(0.019) TCGA-BR-4370-01 19 16611979 16611979 G A C19orf44 Missense_Mutation p.G126S 0.21 tolerated(1) benign(0.001) TCGA-BR-4370-01 19 17438603 17438603 G A ANO8 Silent p.C771C 0.12 TCGA-BR-4370-01 19 17476403 17476403 G A PLVAP Missense_Mutation p.R291W 0.16 deleterious(0) probably_damaging(1) TCGA-BR-4370-01 19 17608216 17608216 C T SLC27A1 Silent p.I383I 0.21 TCGA-BR-4370-01 19 17626983 17626983 C T PGLS Missense_Mutation p.T97M 0.20 tolerated(0.06) possibly_damaging(0.505) TCGA-BR-4370-01 19 18179309 18179309 C A IL12RB1 Missense_Mutation p.G406V 0.14 tolerated(0.06) possibly_damaging(0.747) TCGA-BR-4370-01 19 18260634 18260634 C A MAST3 3'UTR 0.21 TCGA-BR-4370-01 19 1828553 1828553 C - REXO1 Frame_Shift_Del p.E79Rfs*81 0.25 TCGA-BR-4370-01 19 19414736 19414736 G A SUGP1 Intron 0.17 TCGA-BR-4370-01 19 19744834 19744834 G A GMIP Silent p.I750I 0.18 TCGA-BR-4370-01 19 20116856 20116856 T - ZNF682 Frame_Shift_Del p.K485Nfs*19 0.20 TCGA-BR-4370-01 19 21365877 21365877 G A ZNF431 Silent p.E257E 0.19 TCGA-BR-4370-01 19 2213582 2213582 C T DOT1L Silent p.S534S 0.17 TCGA-BR-4370-01 19 22379411 22379411 C T ZNF676 Missense_Mutation p.V9I 0.14 deleterious(0.01) benign(0.162) TCGA-BR-4370-01 19 3110179 3110179 A C GNA11 Missense_Mutation p.K57Q 0.20 deleterious(0) probably_damaging(1) TCGA-BR-4370-01 19 33110407 33110407 G A ANKRD27 Missense_Mutation p.S627L 0.19 tolerated(0.27) benign(0.32) TCGA-BR-4370-01 19 33464996 33464997 - A C19orf40 Frame_Shift_Ins p.T94Nfs*5 0.28 TCGA-BR-4370-01 19 33687652 33687652 C T LRP3 Silent p.T30T 0.15 TCGA-BR-4370-01 19 36036859 36036859 G A TMEM147 Silent p.K49K 0.30 TCGA-BR-4370-01 19 36122057 36122057 G A RBM42 Missense_Mutation p.E100K 0.05 deleterious(0) probably_damaging(0.958) TCGA-BR-4370-01 19 36435796 36435796 G A LRFN3 Missense_Mutation p.G588S 0.19 deleterious(0.03) benign(0.334) TCGA-BR-4370-01 19 36727221 36727221 A G ZNF146 5'UTR 0.29 TCGA-BR-4370-01 19 38102620 38102620 A - ZNF540 Frame_Shift_Del p.M149Cfs*12 0.23 TCGA-BR-4370-01 19 38572401 38572401 C T SIPA1L3 Missense_Mutation p.R66C 0.24 deleterious(0.04) probably_damaging(0.95) TCGA-BR-4370-01 19 38976748 38976748 C T RYR1 Missense_Mutation p.A1818V 0.16 probably_damaging(0.937) TCGA-BR-4370-01 19 39010019 39010019 G A RYR1 Missense_Mutation p.R3395Q 0.21 benign(0.1) TCGA-BR-4370-01 19 39369748 39369748 T G SIRT2 3'UTR 0.15 TCGA-BR-4370-01 19 39380359 39380359 G A SIRT2 Silent p.L134L 0.21 TCGA-BR-4370-01 19 39905680 39905680 C T PLEKHG2 Missense_Mutation p.T53I 0.26 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BR-4370-01 19 39924246 39924246 G A RPS16 Intron 0.18 TCGA-BR-4370-01 19 39977066 39977066 C - TIMM50 Frame_Shift_Del p.H314Mfs*21 0.24 TCGA-BR-4370-01 19 40197275 40197275 G A LGALS14 Silent p.S47S 0.22 TCGA-BR-4370-01 19 40877716 40877716 G A PLD3 Missense_Mutation p.R272H 0.20 tolerated(0.36) benign(0.001) TCGA-BR-4370-01 19 40904305 40904305 A G PRX Intron 0.21 TCGA-BR-4370-01 19 42270170 42270170 G A CEACAM6 3'UTR 0.22 TCGA-BR-4370-01 19 4237137 4237137 C - EBI3 3'UTR 0.32 TCGA-BR-4370-01 19 42753368 42753368 C - ERF Frame_Shift_Del p.G299Efs*12 0.14 TCGA-BR-4370-01 19 42879848 42879848 G A MEGF8 Missense_Mutation p.V2420M 0.26 deleterious(0.01) possibly_damaging(0.766) TCGA-BR-4370-01 19 43585372 43585372 G A PSG2 Missense_Mutation p.P31S 0.21 deleterious(0.04) possibly_damaging(0.898) TCGA-BR-4370-01 19 45262835 45262835 G A BCL3 Missense_Mutation p.R443Q 0.20 tolerated_low_confidence(0.21) unknown(0) TCGA-BR-4370-01 19 45540995 45540995 C T RELB Missense_Mutation p.R563C 0.19 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-BR-4370-01 19 45575762 45575762 G A ZNF296 Silent p.H175H 0.12 TCGA-BR-4370-01 19 45900294 45900294 G A PPP1R13L Missense_Mutation p.S74L 0.36 deleterious_low_confidence(0) benign(0.05) TCGA-BR-4370-01 19 45989353 45989353 C T RTN2 Missense_Mutation p.V506M 0.13 deleterious(0.02) possibly_damaging(0.766) TCGA-BR-4370-01 19 46215117 46215117 C T FBXO46 Missense_Mutation p.R546H 0.15 deleterious(0) benign(0.106) TCGA-BR-4370-01 19 46526000 46526000 C G PGLYRP1 Missense_Mutation p.G94R 0.08 deleterious(0.02) probably_damaging(0.982) TCGA-BR-4370-01 19 47492845 47492845 G A ARHGAP35 Missense_Mutation p.V1317M 0.24 deleterious(0) probably_damaging(0.999) TCGA-BR-4370-01 19 48620961 48620961 G A LIG1 Silent p.S839S 0.36 TCGA-BR-4370-01 19 4891270 4891270 G T ARRDC5 Missense_Mutation p.L273M 0.20 deleterious(0) probably_damaging(1) TCGA-BR-4370-01 19 48919411 48919411 C T GRIN2D Silent p.L578L 0.09 TCGA-BR-4370-01 19 49249181 49249183 AGG - IZUMO1 5'UTR 0.20 TCGA-BR-4370-01 19 49254356 49254356 C T FUT1 Silent p.A61A 0.21 TCGA-BR-4370-01 19 49646088 49646088 G A PPFIA3 Missense_Mutation p.V858M 0.10 deleterious(0.01) probably_damaging(0.973) TCGA-BR-4370-01 19 50031892 50031892 G A RCN3 Missense_Mutation p.D55N 0.18 deleterious(0) probably_damaging(0.977) TCGA-BR-4370-01 19 50312814 50312814 C T FUZ Missense_Mutation p.A171T 0.15 tolerated(0.38) benign(0.15) TCGA-BR-4370-01 19 5071059 5071059 G A KDM4B Missense_Mutation p.R222Q 0.18 benign(0.377) TCGA-BR-4370-01 19 50864364 50864364 C T NAPSA Missense_Mutation p.G168R 0.17 deleterious(0) probably_damaging(0.997) TCGA-BR-4370-01 19 51466663 51466663 G A KLK6 Missense_Mutation p.R114C 0.15 deleterious(0.02) possibly_damaging(0.758) TCGA-BR-4370-01 19 51918646 51918646 G A SIGLEC10 Silent p.G373G 0.14 TCGA-BR-4370-01 19 53669090 53669090 C T ZNF665 Missense_Mutation p.R218H 0.20 tolerated(0.25) benign(0.002) TCGA-BR-4370-01 19 5455726 5455726 G A ZNRF4 Missense_Mutation p.R75Q 0.14 tolerated_low_confidence(0.55) benign(0.001) TCGA-BR-4370-01 19 54625258 54625258 C T PRPF31 Silent p.A86A 0.10 TCGA-BR-4370-01 19 54876412 54876412 G T LAIR1 5'UTR 0.21 TCGA-BR-4370-01 19 54930393 54930393 G A TTYH1 Missense_Mutation p.R73Q 0.16 tolerated(0.05) benign(0.178) TCGA-BR-4370-01 19 55450873 55450873 G A NLRP7 Silent p.L438L 0.18 TCGA-BR-4370-01 19 56173906 56173906 G - U2AF2 Frame_Shift_Del p.L178* 0.28 TCGA-BR-4370-01 19 56241264 56241264 C T NLRP9 Missense_Mutation p.D643N 0.24 tolerated(1) benign(0.014) TCGA-BR-4370-01 19 5661542 5661542 C T SAFB Missense_Mutation p.R626C 0.19 deleterious(0) unknown(0) TCGA-BR-4370-01 19 5667115 5667115 G - SAFB Frame_Shift_Del p.G800Afs*8 0.29 TCGA-BR-4370-01 19 57133642 57133642 C T ZNF71 Silent p.G329G 0.13 TCGA-BR-4370-01 19 57175745 57175745 C A ZNF835 Missense_Mutation p.E274D 0.30 deleterious(0.01) benign(0.401) TCGA-BR-4370-01 19 58232172 58232172 T C ZNF671 Missense_Mutation p.S428G 0.11 tolerated(0.3) benign(0.044) TCGA-BR-4370-01 19 58385329 58385329 G A ZNF814 Missense_Mutation p.R477C 0.20 tolerated(0.1) benign(0.27) TCGA-BR-4370-01 19 58549583 58549583 C T ZSCAN1 Intron 0.19 TCGA-BR-4370-01 19 59021257 59021257 G A SLC27A5 Silent p.H338H 0.12 TCGA-BR-4370-01 19 59028288 59028288 G A ZBTB45 Silent p.S251S 0.20 TCGA-BR-4370-01 19 6832176 6832178 GAA - VAV1 In_Frame_Del p.K494del 0.13 TCGA-BR-4370-01 19 6854032 6854032 C A VAV1 Missense_Mutation p.L803I 0.18 deleterious(0) probably_damaging(0.999) TCGA-BR-4370-01 19 8527430 8527430 G A HNRNPM Missense_Mutation p.V101M 0.10 deleterious(0.01) probably_damaging(0.93) TCGA-BR-4370-01 19 8670129 8670129 G A ADAMTS10 Missense_Mutation p.T68M 0.18 tolerated(0.13) benign(0.398) TCGA-BR-4370-01 1 100174665 100174665 A - FRRS1 Frame_Shift_Del p.L557* 0.19 TCGA-BR-4370-01 1 100382219 100382219 G A AGL Silent p.P1471P 0.44 TCGA-BR-4370-01 1 10211398 10211398 C T UBE4B Missense_Mutation p.A902V 0.19 tolerated(1) benign(0.007) TCGA-BR-4370-01 1 104112907 104112907 C T AMY2B Intron 0.18 TCGA-BR-4370-01 1 108116784 108116784 C T VAV3 Missense_Mutation p.R796Q 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-BR-4370-01 1 109197431 109197431 C T HENMT1 Missense_Mutation p.R102Q 0.18 deleterious(0.02) probably_damaging(0.93) TCGA-BR-4370-01 1 109944523 109944524 - A PSMA5 3'UTR 0.21 TCGA-BR-4370-01 1 110128869 110128869 C T GNAI3 Nonsense_Mutation p.R208* 0.23 TCGA-BR-4370-01 1 110199772 110199772 G T GSTM4 Intron 0.16 TCGA-BR-4370-01 1 110251177 110251177 T C GSTM5 5'Flank 0.32 TCGA-BR-4370-01 1 11184640 11184640 G A MTOR Missense_Mutation p.R2193C 0.17 deleterious(0) probably_damaging(0.998) TCGA-BR-4370-01 1 11204707 11204707 G A MTOR Nonsense_Mutation p.Q1624* 0.16 TCGA-BR-4370-01 1 113231495 113231495 G A MOV10 Intron 0.23 TCGA-BR-4370-01 1 113657401 113657401 T C LRIG2 Silent p.I811I 0.22 TCGA-BR-4370-01 1 115418692 115418692 A C SYCP1 Missense_Mutation p.K220N 0.19 deleterious(0) probably_damaging(1) TCGA-BR-4370-01 1 115537372 115537372 A G SYCP1 Silent p.P919P 0.23 TCGA-BR-4370-01 1 116663675 116663675 G A MAB21L3 Silent p.T57T 0.17 TCGA-BR-4370-01 1 1190726 1190726 C T UBE2J2 Missense_Mutation p.V229I 0.20 tolerated(0.19) benign(0.001) TCGA-BR-4370-01 1 119427325 119427325 C T TBX15 3'UTR 0.24 TCGA-BR-4370-01 1 120458868 120458868 C T NOTCH2 Silent p.T2159T 0.14 TCGA-BR-4370-01 1 1233229 1233229 G A ACAP3 Silent p.R367R 0.19 TCGA-BR-4370-01 1 1248444 1248444 G A CPSF3L Missense_Mutation p.R374W 0.29 deleterious(0) probably_damaging(0.964) TCGA-BR-4370-01 1 1275151 1275151 G A DVL1 Silent p.A317A 0.11 TCGA-BR-4370-01 1 12952856 12952856 C T PRAMEF10 Missense_Mutation p.R439H 0.29 tolerated(0.08) benign(0.065) TCGA-BR-4370-01 1 145535840 145535840 G A ITGA10 Silent p.L676L 0.09 TCGA-BR-4370-01 1 146766109 146766109 G A CHD1L Missense_Mutation p.R842H 0.23 deleterious(0) probably_damaging(0.996) TCGA-BR-4370-01 1 150131356 150131356 C T PLEKHO1 Missense_Mutation p.R290W 0.19 deleterious(0.04) benign(0) TCGA-BR-4370-01 1 150769217 150769217 G A CTSK 3'UTR 0.19 TCGA-BR-4370-01 1 152275618 152275618 G T FLG Missense_Mutation p.S3915Y 0.21 unknown(0) TCGA-BR-4370-01 1 152277533 152277533 G A FLG Missense_Mutation p.R3277C 0.17 unknown(0) TCGA-BR-4370-01 1 152759797 152759797 C T LCE1E Nonsense_Mutation p.Q8* 0.17 TCGA-BR-4370-01 1 152856881 152856881 C A SMCP Intron 0.17 TCGA-BR-4370-01 1 153533830 153533830 A - S100A2 3'UTR 0.22 TCGA-BR-4370-01 1 153744815 153744815 G A INTS3 Splice_Site p.X907_splice 0.22 TCGA-BR-4370-01 1 154067526 154067526 A - NUP210L Frame_Shift_Del p.L691Wfs*3 0.25 TCGA-BR-4370-01 1 155271181 155271181 C T PKLR Silent p.S2S 0.12 TCGA-BR-4370-01 1 156534446 156534446 T - IQGAP3 Frame_Shift_Del p.K133Rfs*6 0.10 TCGA-BR-4370-01 1 156843499 156843499 C T NTRK1 Missense_Mutation p.P309S 0.18 deleterious(0) probably_damaging(0.999) TCGA-BR-4370-01 1 156916459 156916459 T C ARHGEF11 Missense_Mutation p.M897V 0.04 tolerated(0.11) benign(0.096) TCGA-BR-4370-01 1 158262112 158262112 C A CD1C Silent p.L189L 0.20 TCGA-BR-4370-01 1 158622284 158622284 C T SPTA1 Silent p.L1116L 0.18 TCGA-BR-4370-01 1 158687412 158687412 G T OR6K3 Missense_Mutation p.T165K 0.21 tolerated(0.36) possibly_damaging(0.58) TCGA-BR-4370-01 1 159170735 159170735 C - CADM3 3'UTR 0.21 TCGA-BR-4370-01 1 159558612 159558612 C A APCS 3'UTR 0.18 TCGA-BR-4370-01 1 161023081 161023081 C T ARHGAP30 Missense_Mutation p.V211M 0.19 deleterious(0) probably_damaging(0.999) TCGA-BR-4370-01 1 16260214 16260214 C - SPEN Frame_Shift_Del p.P2495Lfs*4 0.22 TCGA-BR-4370-01 1 1636055 1636055 C T CDK11A Missense_Mutation p.V500M 0.19 deleterious(0) unknown(0) TCGA-BR-4370-01 1 1687734 1687734 C - NADK Frame_Shift_Del p.G328Efs*30 0.16 TCGA-BR-4370-01 1 169680634 169680634 C T SELL Intron 0.15 TCGA-BR-4370-01 1 172113759 172113759 C T DNM3 Intron 0.26 TCGA-BR-4370-01 1 173545816 173545816 C T SLC9C2 Missense_Mutation p.E296K 0.29 deleterious(0.02) benign(0.282) TCGA-BR-4370-01 1 176675551 176675551 A G PAPPA2 Missense_Mutation p.K1141R 0.19 tolerated(1) benign(0.001) TCGA-BR-4370-01 1 177250079 177250079 C T BRINP2 Silent p.Y589Y 0.28 TCGA-BR-4370-01 1 177250697 177250697 G T BRINP2 3'UTR 0.17 TCGA-BR-4370-01 1 180155212 180155212 G A QSOX1 Silent p.L304L 0.27 TCGA-BR-4370-01 1 181702089 181702089 G A CACNA1E Missense_Mutation p.G956E 0.17 tolerated(0.09) benign(0.002) TCGA-BR-4370-01 1 182026671 182026671 C T ZNF648 Missense_Mutation p.A159T 0.19 tolerated(0.79) benign(0) TCGA-BR-4370-01 1 183077451 183077451 G A LAMC1 Missense_Mutation p.R255H 0.17 deleterious(0) probably_damaging(1) TCGA-BR-4370-01 1 183083684 183083684 G A LAMC1 Missense_Mutation p.R347Q 0.15 deleterious(0.05) possibly_damaging(0.768) TCGA-BR-4370-01 1 184863256 184863256 C T FAM129A Missense_Mutation p.V91I 0.22 tolerated(0.67) benign(0.008) TCGA-BR-4370-01 1 186296653 186296653 A G TPR Missense_Mutation p.V1943A 0.32 benign(0.153) TCGA-BR-4370-01 1 196971705 196971705 C T CFHR5 Missense_Mutation p.A414V 0.26 deleterious(0.02) benign(0.298) TCGA-BR-4370-01 1 197404029 197404029 G A CRB1 Silent p.L1012L 0.12 TCGA-BR-4370-01 1 19923596 19923596 G T MINOS1 Silent p.V19V 0.15 TCGA-BR-4370-01 1 200376039 200376039 C T ZNF281 3'UTR 0.14 TCGA-BR-4370-01 1 202385958 202385958 A T PPP1R12B Missense_Mutation p.E112V 0.19 deleterious(0) probably_damaging(0.99) TCGA-BR-4370-01 1 205238587 205238587 C T TMCC2 Silent p.T419T 0.20 TCGA-BR-4370-01 1 207105105 207105105 G A PIGR Missense_Mutation p.S684L 0.18 deleterious(0) possibly_damaging(0.743) TCGA-BR-4370-01 1 207106471 207106471 A G PIGR Silent p.P582P 0.22 TCGA-BR-4370-01 1 210970965 210970965 C A KCNH1 Silent p.V600V 0.16 TCGA-BR-4370-01 1 212194449 212194449 T G INTS7 Missense_Mutation p.K67T 0.19 deleterious(0) probably_damaging(1) TCGA-BR-4370-01 1 212798363 212798363 C T FAM71A Silent p.S48S 0.16 TCGA-BR-4370-01 1 213302993 213302993 C T RPS6KC1 Missense_Mutation p.S199L 0.18 tolerated(0.3) benign(0.003) TCGA-BR-4370-01 1 214557590 214557590 C T PTPN14 Silent p.T536T 0.20 TCGA-BR-4370-01 1 214815832 214815832 T C CENPF Missense_Mutation p.L1384S 0.18 possibly_damaging(0.711) TCGA-BR-4370-01 1 21937954 21937954 G A RAP1GAP Silent p.D342D 0.15 TCGA-BR-4370-01 1 220324483 220324483 A - RAB3GAP2 3'UTR 0.38 TCGA-BR-4370-01 1 222833602 222833602 G A MIA3 Missense_Mutation p.V1687M 0.18 deleterious(0.05) benign(0.02) TCGA-BR-4370-01 1 223465929 223465929 G A SUSD4 Silent p.S71S 0.17 TCGA-BR-4370-01 1 227069586 227069586 C A PSEN2 Intron 0.29 TCGA-BR-4370-01 1 227174287 227174287 G A ADCK3 Missense_Mutation p.R598H 0.17 deleterious(0) probably_damaging(1) TCGA-BR-4370-01 1 228285303 228285303 G A ARF1 Missense_Mutation p.V91M 0.18 deleterious_low_confidence(0.02) possibly_damaging(0.789) TCGA-BR-4370-01 1 228285355 228285355 T C ARF1 Missense_Mutation p.M108T 0.19 tolerated_low_confidence(0.33) benign(0.004) TCGA-BR-4370-01 1 2283635 2283635 A G MORN1 Intron 0.33 TCGA-BR-4370-01 1 228481116 228481116 G A OBSCN Missense_Mutation p.V4073M 0.18 benign(0.002) TCGA-BR-4370-01 1 228506705 228506705 G A OBSCN Missense_Mutation p.R5708H 0.18 probably_damaging(0.999) TCGA-BR-4370-01 1 228566376 228566376 G A OBSCN Silent p.P8884P 0.11 TCGA-BR-4370-01 1 228613002 228613002 G A HIST3H3 Missense_Mutation p.R9C 0.23 deleterious_low_confidence(0.02) benign(0.002) TCGA-BR-4370-01 1 229438688 229438688 C T RAB4A Silent p.R207R 0.13 TCGA-BR-4370-01 1 229567811 229567811 G A ACTA1 Silent p.D246D 0.21 TCGA-BR-4370-01 1 229653865 229653865 T - ABCB10 3'UTR 0.22 TCGA-BR-4370-01 1 229750217 229750217 G A TAF5L Missense_Mutation p.R5C 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-BR-4370-01 1 229773794 229773794 G A URB2 Missense_Mutation p.R1145K 0.13 tolerated(1) benign(0) TCGA-BR-4370-01 1 233750103 233750105 CTT - KCNK1 In_Frame_Del p.F63del 0.18 TCGA-BR-4370-01 1 234367374 234367374 G A SLC35F3 Silent p.A165A 0.21 TCGA-BR-4370-01 1 236148772 236148772 C T NID1 Missense_Mutation p.V988M 0.17 tolerated(0.16) benign(0.09) TCGA-BR-4370-01 1 237656303 237656303 G A RYR2 Missense_Mutation p.R626H 0.20 benign(0.109) TCGA-BR-4370-01 1 237947036 237947036 C T RYR2 Silent p.N4008N 0.24 TCGA-BR-4370-01 1 241907814 241907814 T C WDR64 Silent p.Y520Y 0.22 TCGA-BR-4370-01 1 247151469 247151469 T A ZNF695 Missense_Mutation p.R116S 0.20 tolerated(0.19) benign(0.001) TCGA-BR-4370-01 1 247875544 247875544 G - OR6F1 Frame_Shift_Del p.R172Vfs*24 0.29 TCGA-BR-4370-01 1 248636891 248636891 C T OR2T3 Silent p.C80C 0.23 TCGA-BR-4370-01 1 27101268 27101268 C - ARID1A Frame_Shift_Del p.Q1519Rfs*8 0.24 TCGA-BR-4370-01 1 27106648 27106648 G A ARID1A Missense_Mutation p.G2087R 0.20 probably_damaging(0.96) TCGA-BR-4370-01 1 27121087 27121087 C T PIGV Nonsense_Mutation p.R188* 0.17 TCGA-BR-4370-01 1 27680355 27680356 CT - SYTL1 3'UTR 0.17 TCGA-BR-4370-01 1 2939191 2939191 G A ACTRT2 Missense_Mutation p.R314Q 0.22 deleterious(0.01) probably_damaging(0.993) TCGA-BR-4370-01 1 29586039 29586039 C T PTPRU Missense_Mutation p.A213V 0.05 tolerated(0.31) benign(0.006) TCGA-BR-4370-01 1 32202284 32202286 AAG - BAI2 In_Frame_Del p.F1007del 0.25 TCGA-BR-4370-01 1 32280324 32280324 C A SPOCD1 Missense_Mutation p.R204M 0.17 deleterious(0.03) benign(0.319) TCGA-BR-4370-01 1 33087451 33087451 T - ZBTB8OS 3'UTR 0.23 TCGA-BR-4370-01 1 3328020 3328020 G A PRDM16 Missense_Mutation p.R420H 0.09 deleterious(0) probably_damaging(0.999) TCGA-BR-4370-01 1 3424477 3424477 C T MEGF6 Silent p.P557P 0.17 TCGA-BR-4370-01 1 3425231 3425231 G A MEGF6 Silent p.G517G 0.18 TCGA-BR-4370-01 1 36752135 36752135 G T THRAP3 Nonsense_Mutation p.G102* 0.21 TCGA-BR-4370-01 1 36756997 36756997 G A THRAP3 Missense_Mutation p.E590K 0.20 deleterious(0.01) probably_damaging(0.953) TCGA-BR-4370-01 1 36769659 36769659 G A THRAP3 3'UTR 0.21 TCGA-BR-4370-01 1 38185238 38185238 G - EPHA10 Frame_Shift_Del p.R869Gfs*10 0.30 TCGA-BR-4370-01 1 40319596 40319596 A G TRIT1 Intron 0.20 TCGA-BR-4370-01 1 41582667 41582667 G A SCMH1 Missense_Mutation p.A133V 0.18 tolerated(0.2) probably_damaging(0.997) TCGA-BR-4370-01 1 43908512 43908512 C T SZT2 Missense_Mutation p.P2668L 0.16 deleterious(0.02) probably_damaging(0.964) TCGA-BR-4370-01 1 44084972 44084972 C T PTPRF Missense_Mutation p.R1554C 0.20 deleterious(0) probably_damaging(1) TCGA-BR-4370-01 1 44429947 44429947 G A IPO13 Missense_Mutation p.R784K 0.18 tolerated(0.27) benign(0.009) TCGA-BR-4370-01 1 45271288 45271288 C T PLK3 Missense_Mutation p.P627S 0.16 tolerated(0.65) benign(0.214) TCGA-BR-4370-01 1 45470328 45470328 G A HECTD3 Missense_Mutation p.R696C 0.16 deleterious(0.04) benign(0.262) TCGA-BR-4370-01 1 46669228 46669228 C T LURAP1 Silent p.L44L 0.16 TCGA-BR-4370-01 1 48705022 48705022 T C SLC5A9 Missense_Mutation p.L522P 0.14 deleterious(0) probably_damaging(0.999) TCGA-BR-4370-01 1 52800392 52800392 G A ZFYVE9 Missense_Mutation p.A1208T 0.14 deleterious(0) possibly_damaging(0.654) TCGA-BR-4370-01 1 55167778 55167778 C T MROH7 Missense_Mutation p.R1101C 0.22 deleterious(0.02) probably_damaging(0.983) TCGA-BR-4370-01 1 63329809 63329809 G A ATG4C Silent p.T452T 0.22 TCGA-BR-4370-01 1 64707368 64707368 A G UBE2U Missense_Mutation p.Y210C 0.21 deleterious(0.04) probably_damaging(0.931) TCGA-BR-4370-01 1 6533156 6533156 G A PLEKHG5 Silent p.L371L 0.23 TCGA-BR-4370-01 1 65858399 65858399 T G DNAJC6 Missense_Mutation p.F585C 0.16 deleterious(0) probably_damaging(0.999) TCGA-BR-4370-01 1 6634730 6634730 C T TAS1R1 Missense_Mutation p.R180W 0.15 tolerated(0.08) benign(0.077) TCGA-BR-4370-01 1 67442326 67442326 A - MIER1 Frame_Shift_Del p.K385Nfs*25 0.20 TCGA-BR-4370-01 1 8416191 8416191 G A RERE Silent p.H1485H 0.20 TCGA-BR-4370-01 1 85020568 85020568 T - CTBS 3'UTR 0.24 TCGA-BR-4370-01 1 87810502 87810502 C T LMO4 3'UTR 0.19 TCGA-BR-4370-01 1 89206848 89206848 A - PKN2 Frame_Shift_Del p.S78Vfs*5 0.14 TCGA-BR-4370-01 1 89885829 89885829 C T GBP1P1 RNA 0.03 TCGA-BR-4370-01 1 9078339 9078339 C T SLC2A7 Missense_Mutation p.V178I 0.19 tolerated(0.82) benign(0.021) TCGA-BR-4370-01 1 91406777 91406777 T G ZNF644 Missense_Mutation p.D45A 0.21 deleterious_low_confidence(0.01) benign(0.201) TCGA-BR-4370-01 1 9781845 9781845 C T PIK3CD Missense_Mutation p.A661V 0.19 tolerated(0.06) benign(0.081) TCGA-BR-4370-01 1 9795563 9795563 C T CLSTN1 Silent p.T615T 0.25 TCGA-BR-4370-01 1 98058819 98058819 G A DPYD Silent p.I361I 0.16 TCGA-BR-4370-01 1 99469999 99469999 C T LPPR5 Missense_Mutation p.V77M 0.27 deleterious(0.03) possibly_damaging(0.756) TCGA-BR-4370-01 20 1290993 1290993 G A SDCBP2 3'UTR 0.28 TCGA-BR-4370-01 20 13071817 13071817 G A SPTLC3 Missense_Mutation p.A232T 0.17 deleterious(0) probably_damaging(0.99) TCGA-BR-4370-01 20 13847380 13847380 C A SEL1L2 Nonsense_Mutation p.G458* 0.14 TCGA-BR-4370-01 20 14306569 14306569 A C FLRT3 Silent p.P528P 0.11 TCGA-BR-4370-01 20 1532450 1532450 C T SIRPD Missense_Mutation p.R103H 0.17 tolerated(0.22) benign(0.037) TCGA-BR-4370-01 20 21687260 21687260 C T PAX1 Silent p.T157T 0.18 TCGA-BR-4370-01 20 23065887 23065887 C - CD93 Frame_Shift_Del p.A315Pfs*273 0.26 TCGA-BR-4370-01 20 30533657 30533657 G - PDRG1 Frame_Shift_Del p.L119Sfs*13 0.23 TCGA-BR-4370-01 20 30585220 30585220 G T XKR7 Missense_Mutation p.G567V 0.15 tolerated(0.09) benign(0.115) TCGA-BR-4370-01 20 31386314 31386314 G A DNMT3B Silent p.A513A 0.12 TCGA-BR-4370-01 20 31619533 31619533 G A BPIFB6 Missense_Mutation p.G27D 0.13 tolerated(0.5) possibly_damaging(0.819) TCGA-BR-4370-01 20 33703204 33703204 A - EDEM2 3'UTR 0.14 TCGA-BR-4370-01 20 35444561 35444561 G A SOGA1 Silent p.S428S 0.29 TCGA-BR-4370-01 20 36841597 36841597 G A KIAA1755 Silent p.R1150R 0.15 TCGA-BR-4370-01 20 37356214 37356214 G A SLC32A1 Silent p.L170L 0.18 TCGA-BR-4370-01 20 3914747 3914747 G - RNF24 Frame_Shift_Del p.P158Lfs*76 0.17 TCGA-BR-4370-01 20 39832436 39832436 T - ZHX3 Frame_Shift_Del p.K374Rfs*18 0.21 TCGA-BR-4370-01 20 43348726 43348727 - C WISP2 Frame_Shift_Ins p.G85Rfs*17 0.28 TCGA-BR-4370-01 20 44597039 44597039 G - ZNF335 Intron 0.22 TCGA-BR-4370-01 20 44639240 44639240 G A MMP9 Missense_Mutation p.A164T 0.18 deleterious(0) possibly_damaging(0.77) TCGA-BR-4370-01 20 44987182 44987182 G - SLC35C2 5'UTR 0.16 TCGA-BR-4370-01 20 45353775 45353775 C T SLC2A10 Silent p.L34L 0.26 TCGA-BR-4370-01 20 45853197 45853197 G A ZMYND8 Missense_Mutation p.A964V 0.21 deleterious(0.01) possibly_damaging(0.818) TCGA-BR-4370-01 20 45878128 45878128 C T ZMYND8 Silent p.Q559Q 0.19 TCGA-BR-4370-01 20 49510461 49510461 G T ADNP Silent p.R264R 0.18 TCGA-BR-4370-01 20 50705581 50705581 C - ZFP64 Intron 0.19 TCGA-BR-4370-01 20 52199236 52199236 C T ZNF217 Missense_Mutation p.A44T 0.14 tolerated(1) benign(0.002) TCGA-BR-4370-01 20 56099084 56099084 C T CTCFL Missense_Mutation p.V60I 0.16 tolerated(1) benign(0.002) TCGA-BR-4370-01 20 56227349 56227349 G - PMEPA1 Frame_Shift_Del p.S209Afs*61 0.40 TCGA-BR-4370-01 20 57035905 57035905 T C APCDD1L Missense_Mutation p.I483V 0.21 tolerated(1) benign(0) TCGA-BR-4370-01 20 57036335 57036335 G A APCDD1L Silent p.G339G 0.24 TCGA-BR-4370-01 20 60699825 60699825 G A LSM14B Missense_Mutation p.A94T 0.07 deleterious(0) probably_damaging(1) TCGA-BR-4370-01 20 61598484 61598484 C A SLC17A9 Intron 0.36 TCGA-BR-4370-01 20 61981936 61981936 G A CHRNA4 Missense_Mutation p.T276M 0.17 deleterious(0) probably_damaging(0.999) TCGA-BR-4370-01 20 62365018 62365019 - C ZGPAT Frame_Shift_Ins p.L269Tfs*17 0.38 TCGA-BR-4370-01 20 62407045 62407046 - C ZBTB46 Frame_Shift_Ins p.A403Gfs*8 0.27 TCGA-BR-4370-01 20 7875863 7875863 C T HAO1 Missense_Mutation p.A244T 0.17 tolerated(0.06) benign(0.377) TCGA-BR-4370-01 20 8696934 8696934 C T PLCB1 Missense_Mutation p.A425V 0.18 deleterious(0) probably_damaging(0.981) TCGA-BR-4370-01 21 31311854 31311854 G A GRIK1 5'UTR 0.37 TCGA-BR-4370-01 21 31655009 31655009 C T KRTAP24-1 Missense_Mutation p.C81Y 0.18 deleterious(0) probably_damaging(0.951) TCGA-BR-4370-01 21 34058147 34058147 C A SYNJ1 Missense_Mutation p.K382N 0.19 tolerated(0.21) possibly_damaging(0.691) TCGA-BR-4370-01 21 35890534 35890534 C T RCAN1 Missense_Mutation p.A203T 0.15 tolerated(0.2) possibly_damaging(0.899) TCGA-BR-4370-01 21 38444460 38444460 A G PIGP Intron 0.12 TCGA-BR-4370-01 21 41384893 41384893 A - DSCAM 3'UTR 0.26 TCGA-BR-4370-01 21 41385022 41385022 A G DSCAM Missense_Mutation p.L1993P 0.23 deleterious_low_confidence(0) benign(0.001) TCGA-BR-4370-01 21 41561090 41561090 G A DSCAM Missense_Mutation p.A811V 0.18 deleterious(0.03) probably_damaging(0.983) TCGA-BR-4370-01 21 43411514 43411514 G - ZBTB21 Frame_Shift_Del p.E899Kfs*36 0.24 TCGA-BR-4370-01 21 43771089 43771089 G A TFF2 5'UTR 0.17 TCGA-BR-4370-01 21 44589335 44589335 C T CRYAA Silent p.S42S 0.19 TCGA-BR-4370-01 21 45786736 45786736 G - TRPM2 Frame_Shift_Del p.A177Pfs*6 0.27 TCGA-BR-4370-01 21 45971248 45971248 C T KRTAP10-2 Missense_Mutation p.G32S 0.17 deleterious(0.01) possibly_damaging(0.639) TCGA-BR-4370-01 21 46086433 46086433 C A KRTAP12-2 Missense_Mutation p.G124V 0.18 tolerated(0.55) probably_damaging(0.999) TCGA-BR-4370-01 21 47685900 47685900 G A MCM3AP Silent p.I990I 0.21 TCGA-BR-4370-01 22 18463722 18463723 TG - MICAL3 Intron 0.17 TCGA-BR-4370-01 22 20100722 20100722 C T TRMT2A Missense_Mutation p.E490K 0.20 deleterious(0) probably_damaging(0.959) TCGA-BR-4370-01 22 20780227 20780227 C T SCARF2 Missense_Mutation p.R684H 0.24 tolerated(0.12) benign(0.001) TCGA-BR-4370-01 22 20800951 20800951 C T KLHL22 Missense_Mutation p.A440T 0.14 deleterious(0) probably_damaging(0.94) TCGA-BR-4370-01 22 21384385 21384385 C T SLC7A4 Missense_Mutation p.R413H 0.12 deleterious(0.03) possibly_damaging(0.638) TCGA-BR-4370-01 22 21799865 21799865 G - HIC2 Frame_Shift_Del p.G229Afs*45 0.23 TCGA-BR-4370-01 22 22319678 22319678 G A TOP3B Missense_Mutation p.R308C 0.23 deleterious(0) probably_damaging(0.991) TCGA-BR-4370-01 22 23438372 23438372 G A GNAZ Missense_Mutation p.A164T 0.16 tolerated(0.25) benign(0.018) TCGA-BR-4370-01 22 23523754 23523754 C A BCR Missense_Mutation p.L203M 0.20 deleterious_low_confidence(0.03) possibly_damaging(0.665) TCGA-BR-4370-01 22 23741971 23741971 C G ZDHHC8P1 RNA 0.27 TCGA-BR-4370-01 22 24829341 24829341 G A ADORA2A 5'UTR 0.24 TCGA-BR-4370-01 22 25024147 25024147 C T GGT1 Missense_Mutation p.T479M 0.15 deleterious(0) probably_damaging(0.997) TCGA-BR-4370-01 22 28196648 28196648 C T MN1 5'UTR 0.18 TCGA-BR-4370-01 22 30639661 30639661 G A LIF Silent p.A196A 0.19 TCGA-BR-4370-01 22 30661062 30661062 G A OSM Missense_Mutation p.R36C 0.10 tolerated(0.05) benign(0.424) TCGA-BR-4370-01 22 30951307 30951307 A G GAL3ST1 Missense_Mutation p.M302T 0.20 tolerated(0.63) benign(0.065) TCGA-BR-4370-01 22 33402468 33402468 A - SYN3 Frame_Shift_Del p.F60Lfs*8 0.22 TCGA-BR-4370-01 22 35808554 35808554 G A MCM5 Missense_Mutation p.R324H 0.19 tolerated(0.1) benign(0.005) TCGA-BR-4370-01 22 36723530 36723530 C T MYH9 Missense_Mutation p.R165Q 0.20 probably_damaging(0.996) TCGA-BR-4370-01 22 36902310 36902310 G A FOXRED2 Missense_Mutation p.R54C 0.12 deleterious(0) probably_damaging(1) TCGA-BR-4370-01 22 38130975 38130975 G A TRIOBP Silent p.A1544A 0.19 TCGA-BR-4370-01 22 38620799 38620799 G A TMEM184B Silent p.D325D 0.24 TCGA-BR-4370-01 22 38934340 38934340 T - DMC1 Frame_Shift_Del p.K245Nfs*22 0.25 TCGA-BR-4370-01 22 39477083 39477083 C T APOBEC3G Missense_Mutation p.T106M 0.17 deleterious(0.01) probably_damaging(0.969) TCGA-BR-4370-01 22 39710758 39710758 C T RPL3 Missense_Mutation p.R261H 0.19 tolerated(0.16) benign(0.005) TCGA-BR-4370-01 22 42608248 42608248 G A TCF20 Missense_Mutation p.R1022W 0.15 probably_damaging(0.999) TCGA-BR-4370-01 22 43272302 43272302 C T PACSIN2 Missense_Mutation p.D397N 0.15 tolerated(0.23) benign(0.273) TCGA-BR-4370-01 22 45996379 45996379 C T FBLN1 3'UTR 0.20 TCGA-BR-4370-01 22 46085740 46085740 C T ATXN10 Missense_Mutation p.R89C 0.16 deleterious(0) probably_damaging(1) TCGA-BR-4370-01 22 46792521 46792521 C T CELSR1 Missense_Mutation p.G1942R 0.21 deleterious(0) probably_damaging(0.99) TCGA-BR-4370-01 22 50615987 50615987 G A PANX2 Silent p.P282P 0.24 TCGA-BR-4370-01 22 50648623 50648623 C T SELO Missense_Mutation p.T318M 0.18 deleterious(0) probably_damaging(0.999) TCGA-BR-4370-01 22 50649342 50649342 T C SELO Splice_Site p.X451_splice 0.17 TCGA-BR-4370-01 22 50885774 50885774 C T SBF1 Missense_Mutation p.V1854M 0.17 tolerated(0.05) possibly_damaging(0.904) TCGA-BR-4370-01 22 50900780 50900782 CTC - SBF1 In_Frame_Del p.E750del 0.28 TCGA-BR-4370-01 2 100010862 100010862 G A EIF5B Splice_Site p.X1004_splice 0.17 TCGA-BR-4370-01 2 101967439 101967439 G A CREG2 Silent p.G273G 0.10 TCGA-BR-4370-01 2 106498310 106498310 C T NCK2 Silent p.Y251Y 0.16 TCGA-BR-4370-01 2 106715192 106715192 T C UXS1 Missense_Mutation p.Q341R 0.19 tolerated(0.27) benign(0.001) TCGA-BR-4370-01 2 107423342 107423342 C T ST6GAL2 Missense_Mutation p.R461Q 0.19 probably_damaging(1) TCGA-BR-4370-01 2 109421455 109421455 A - CCDC138 Frame_Shift_Del p.K284Nfs*3 0.21 TCGA-BR-4370-01 2 11053018 11053018 G A KCNF1 Missense_Mutation p.A156T 0.19 tolerated(0.55) benign(0.002) TCGA-BR-4370-01 2 111144803 111144803 G T LINC01106 5'Flank 0.12 TCGA-BR-4370-01 2 111691125 111691125 G A ACOXL Missense_Mutation p.R322H 0.17 tolerated(0.09) benign(0.051) TCGA-BR-4370-01 2 112942900 112942900 G A FBLN7 Missense_Mutation p.V311M 0.12 deleterious(0) probably_damaging(1) TCGA-BR-4370-01 2 118732806 118732806 T - CCDC93 Frame_Shift_Del p.A237Lfs*20 0.23 TCGA-BR-4370-01 2 119604372 119604372 C T EN1 Silent p.P124P 0.19 TCGA-BR-4370-01 2 128477227 128477227 C T WDR33 Missense_Mutation p.R791Q 0.18 tolerated_low_confidence(0.37) possibly_damaging(0.885) TCGA-BR-4370-01 2 135625178 135625178 C T ACMSD Silent p.F172F 0.20 TCGA-BR-4370-01 2 1418199 1418199 C T TPO Silent p.L7L 0.15 TCGA-BR-4370-01 2 152320989 152320989 A - RIF1 Frame_Shift_Del p.N1654Mfs*21 0.17 TCGA-BR-4370-01 2 158167732 158167733 - T GALNT5 Frame_Shift_Ins p.E901* 0.22 TCGA-BR-4370-01 2 163055294 163055294 C T FAP Missense_Mutation p.A459T 0.18 tolerated(0.08) benign(0.029) TCGA-BR-4370-01 2 165956828 165956828 C T SCN3A Missense_Mutation p.R1317Q 0.17 deleterious(0.02) probably_damaging(0.977) TCGA-BR-4370-01 2 165984285 165984285 G A SCN3A Silent p.Y1083Y 0.20 TCGA-BR-4370-01 2 166848275 166848275 G A SCN1A Missense_Mutation p.P1837L 0.17 deleterious(0.04) probably_damaging(1) TCGA-BR-4370-01 2 170361468 170361468 C T BBS5 3'UTR 0.21 TCGA-BR-4370-01 2 174074513 174074513 G A MLTK Silent p.T267T 0.08 TCGA-BR-4370-01 2 174774779 174774779 A G SP3 Missense_Mutation p.S746P 0.22 deleterious_low_confidence(0.05) benign(0.328) TCGA-BR-4370-01 2 176948177 176948177 C T EVX2 Missense_Mutation p.A110T 0.16 tolerated(1) benign(0.001) TCGA-BR-4370-01 2 176965131 176965131 G A HOXD12 Intron 0.20 TCGA-BR-4370-01 2 17697087 17697088 - A RAD51AP2 Frame_Shift_Ins p.P866Sfs*4 0.14 TCGA-BR-4370-01 2 179391930 179391930 T C TTN Missense_Mutation p.T35929A 0.10 TCGA-BR-4370-01 2 179395635 179395635 G A TTN Missense_Mutation p.S35236F 0.18 TCGA-BR-4370-01 2 179426759 179426759 C T TTN Missense_Mutation p.E28034K 0.14 TCGA-BR-4370-01 2 179428010 179428010 A G TTN Missense_Mutation p.W27617R 0.17 TCGA-BR-4370-01 2 179440367 179440367 C T TTN Missense_Mutation p.G23498S 0.21 TCGA-BR-4370-01 2 179472567 179472567 G A TTN Silent p.A17649A 0.20 TCGA-BR-4370-01 2 183094749 183094749 A C PDE1A Missense_Mutation p.L236R 0.21 deleterious(0.04) probably_damaging(0.985) TCGA-BR-4370-01 2 183731002 183731002 C T FRZB Silent p.A93A 0.15 TCGA-BR-4370-01 2 187626384 187626384 A - FAM171B Frame_Shift_Del p.K440Rfs*15 0.17 TCGA-BR-4370-01 2 193059316 193059316 C A TMEFF2 5'UTR 0.19 TCGA-BR-4370-01 2 196759791 196759791 C T DNAH7 Missense_Mutation p.R1602H 0.19 deleterious(0) probably_damaging(1) TCGA-BR-4370-01 2 197008310 197008310 T C STK17B Missense_Mutation p.E194G 0.21 deleterious(0) possibly_damaging(0.721) TCGA-BR-4370-01 2 197080603 197080603 G A HECW2 Silent p.I1531I 0.20 TCGA-BR-4370-01 2 211019062 211019062 A - KANSL1L Frame_Shift_Del p.L82* 0.19 TCGA-BR-4370-01 2 220336640 220336640 G A SPEG Missense_Mutation p.G1256S 0.19 probably_damaging(1) TCGA-BR-4370-01 2 220473425 220473425 G A STK11IP Missense_Mutation p.R586H 0.18 deleterious(0) probably_damaging(0.996) TCGA-BR-4370-01 2 223168942 223168942 G A CCDC140 Silent p.A107A 0.22 TCGA-BR-4370-01 2 228195480 228195480 C T MFF Silent p.N59N 0.21 TCGA-BR-4370-01 2 231775009 231775009 G T GPR55 Silent p.A223A 0.13 TCGA-BR-4370-01 2 233756178 233756178 G A NGEF Missense_Mutation p.R388W 0.14 deleterious(0.01) benign(0.411) TCGA-BR-4370-01 2 234754463 234754463 C T HJURP Missense_Mutation p.A136T 0.18 tolerated(0.05) probably_damaging(0.968) TCGA-BR-4370-01 2 237074757 237074757 C T GBX2 Missense_Mutation p.A283T 0.17 deleterious(0.03) possibly_damaging(0.68) TCGA-BR-4370-01 2 238274435 238274435 C T COL6A3 Missense_Mutation p.R1915Q 0.14 benign(0.044) TCGA-BR-4370-01 2 24103515 24103515 G A ATAD2B Missense_Mutation p.P299S 0.16 tolerated(0.43) possibly_damaging(0.864) TCGA-BR-4370-01 2 241818169 241818169 C T AGXT Silent p.R370R 0.27 TCGA-BR-4370-01 2 242009422 242009422 T C SNED1 Missense_Mutation p.L1132S 0.14 tolerated(0.19) benign(0.004) TCGA-BR-4370-01 2 242793372 242793372 C T PDCD1 Silent p.P235P 0.28 TCGA-BR-4370-01 2 24494722 24494722 T - ITSN2 Frame_Shift_Del p.T724Hfs*23 0.16 TCGA-BR-4370-01 2 26688695 26688695 C A OTOF Missense_Mutation p.E1548D 0.17 deleterious(0.02) possibly_damaging(0.5) TCGA-BR-4370-01 2 27521604 27521604 C T TRIM54 Missense_Mutation p.S113F 0.13 deleterious(0) possibly_damaging(0.847) TCGA-BR-4370-01 2 27703932 27703932 C T IFT172 Missense_Mutation p.V256M 0.19 deleterious(0.01) probably_damaging(0.961) TCGA-BR-4370-01 2 44549925 44549925 A T PREPL Missense_Mutation p.S655R 0.08 tolerated(0.97) benign(0.001) TCGA-BR-4370-01 2 47202114 47202114 C A TTC7A Missense_Mutation p.L174I 0.18 deleterious(0) possibly_damaging(0.885) TCGA-BR-4370-01 2 48018188 48018188 G A MSH6 Missense_Mutation p.R128H 0.16 deleterious(0.03) probably_damaging(1) TCGA-BR-4370-01 2 54876812 54876812 G A SPTBN1 Missense_Mutation p.V1755M 0.15 deleterious(0.02) possibly_damaging(0.908) TCGA-BR-4370-01 2 55561924 55561925 - T CCDC88A Frame_Shift_Ins p.T678Nfs*4 0.19 TCGA-BR-4370-01 2 56098226 56098226 G A EFEMP1 Missense_Mutation p.R345W 0.18 deleterious(0.01) benign(0.329) TCGA-BR-4370-01 2 56420402 56420402 G A CCDC85A Missense_Mutation p.G356D 0.14 deleterious_low_confidence(0.03) probably_damaging(1) TCGA-BR-4370-01 2 60687583 60687584 - T BCL11A Frame_Shift_Ins p.W822Mfs*4 0.22 TCGA-BR-4370-01 2 63832498 63832498 G A MDH1 Missense_Mutation p.V272I 0.16 tolerated(0.46) benign(0.003) TCGA-BR-4370-01 2 68873189 68873189 G A PROKR1 Missense_Mutation p.G79E 0.16 deleterious(0) probably_damaging(1) TCGA-BR-4370-01 2 69014990 69014990 G A ARHGAP25 Missense_Mutation p.R123H 0.15 deleterious(0.01) probably_damaging(0.994) TCGA-BR-4370-01 2 69034552 69034552 A G ARHGAP25 Missense_Mutation p.D205G 0.18 tolerated(0.13) probably_damaging(0.964) TCGA-BR-4370-01 2 70741999 70741999 G A TGFA Missense_Mutation p.P29L 0.14 tolerated(0.62) benign(0.007) TCGA-BR-4370-01 2 73681186 73681186 G A ALMS1 Missense_Mutation p.R2510Q 0.19 probably_damaging(1) TCGA-BR-4370-01 2 86292608 86292608 A G POLR1A Intron 0.19 TCGA-BR-4370-01 2 88482275 88482275 G A THNSL2 Missense_Mutation p.R287H 0.24 tolerated(0.26) benign(0.002) TCGA-BR-4370-01 2 8926139 8926140 - T KIDINS220 Frame_Shift_Ins p.T654Nfs*28 0.20 TCGA-BR-4370-01 2 96971234 96971234 G A SNRNP200 5'UTR 0.20 TCGA-BR-4370-01 2 97019989 97019989 C T NCAPH Silent p.D357D 0.21 TCGA-BR-4370-01 2 97025921 97025921 A - NCAPH Frame_Shift_Del p.D469Ifs*25 0.16 TCGA-BR-4370-01 2 99204217 99204217 A G INPP4A 3'UTR 0.38 TCGA-BR-4370-01 2 99439344 99439344 C T KIAA1211L Silent p.A464A 0.25 TCGA-BR-4370-01 3 10083180 10083180 C T FANCD2 Intron 0.30 TCGA-BR-4370-01 3 108172981 108172981 A - MYH15 Frame_Shift_Del p.F777Lfs*12 0.17 TCGA-BR-4370-01 3 11301418 11301418 C A HRH1 Missense_Mutation p.P232H 0.22 tolerated(0.61) probably_damaging(0.945) TCGA-BR-4370-01 3 11871205 11871205 G A TAMM41 Missense_Mutation p.A182V 0.19 deleterious(0) possibly_damaging(0.883) TCGA-BR-4370-01 3 121207935 121207935 C T POLQ Silent p.Q1281Q 0.25 TCGA-BR-4370-01 3 12211375 12211375 C A SYN2 RNA 0.14 TCGA-BR-4370-01 3 123666111 123666111 G C CCDC14 Missense_Mutation p.A254G 0.20 deleterious(0.05) benign(0.032) TCGA-BR-4370-01 3 125216990 125216990 C T SNX4 Nonsense_Mutation p.W104* 0.26 TCGA-BR-4370-01 3 12545181 12545181 C T TSEN2 Silent p.I243I 0.23 TCGA-BR-4370-01 3 126071104 126071104 A G KLF15 Missense_Mutation p.L221P 0.30 deleterious(0) probably_damaging(0.999) TCGA-BR-4370-01 3 126736387 126736387 C T PLXNA1 Silent p.N1132N 0.19 TCGA-BR-4370-01 3 128181483 128181483 G A DNAJB8 Silent p.N202N 0.22 TCGA-BR-4370-01 3 12869032 12869032 C A CAND2 Missense_Mutation p.L1102M 0.19 deleterious(0.02) probably_damaging(1) TCGA-BR-4370-01 3 129821709 129821709 G A FAM86HP RNA 0.14 TCGA-BR-4370-01 3 133327401 133327401 T C TOPBP1 Missense_Mutation p.Y1468C 0.15 deleterious(0) probably_damaging(0.997) TCGA-BR-4370-01 3 13381471 13381471 G A NUP210 Silent p.S1118S 0.25 TCGA-BR-4370-01 3 136665004 136665004 T C NCK1 Missense_Mutation p.I269T 0.16 tolerated(0.62) benign(0.002) TCGA-BR-4370-01 3 139257784 139257784 G A RBP1 Missense_Mutation p.R93C 0.14 deleterious(0.01) probably_damaging(1) TCGA-BR-4370-01 3 141011879 141011879 C T ACPL2 Silent p.G425G 0.19 TCGA-BR-4370-01 3 141295889 141295889 C T RASA2 Missense_Mutation p.R511C 0.17 deleterious(0) probably_damaging(0.999) TCGA-BR-4370-01 3 141884461 141884461 G A GK5 3'UTR 0.22 TCGA-BR-4370-01 3 145828190 145828190 T - PLOD2 Frame_Shift_Del p.K128Nfs*23 0.25 TCGA-BR-4370-01 3 148727089 148727089 T - GYG1 Frame_Shift_Del p.F171Lfs*19 0.22 TCGA-BR-4370-01 3 15765943 15765943 T G ANKRD28 Silent p.A213A 0.14 TCGA-BR-4370-01 3 169802275 169802275 G A GPR160 Missense_Mutation p.R172H 0.20 tolerated(0.51) benign(0) TCGA-BR-4370-01 3 179052260 179052260 T - ZNF639 3'UTR 0.26 TCGA-BR-4370-01 3 179474922 179474922 A T USP13 Intron 0.15 TCGA-BR-4370-01 3 179519507 179519507 G A PEX5L 3'UTR 0.19 TCGA-BR-4370-01 3 180364954 180364954 A G CCDC39 Silent p.L480L 0.20 TCGA-BR-4370-01 3 184062384 184062384 G A FAM131A Missense_Mutation p.D243N 0.22 tolerated(0.12) probably_damaging(0.982) TCGA-BR-4370-01 3 185363326 185363326 C T IGF2BP2 Missense_Mutation p.S598N 0.19 tolerated_low_confidence(0.1) benign(0.094) TCGA-BR-4370-01 3 186338453 186338454 - C AHSG Frame_Shift_Ins p.P282Sfs*65 0.26 TCGA-BR-4370-01 3 187447327 187447327 C T BCL6 Missense_Mutation p.R289Q 0.21 tolerated(0.1) probably_damaging(0.996) TCGA-BR-4370-01 3 190030818 190030818 C T CLDN1 Silent p.L77L 0.20 TCGA-BR-4370-01 3 190999982 190999982 A - UTS2B 5'UTR 0.23 TCGA-BR-4370-01 3 19436644 19436644 C T KCNH8 Missense_Mutation p.R340C 0.19 deleterious(0) probably_damaging(1) TCGA-BR-4370-01 3 195975116 195975116 G A PCYT1A Missense_Mutation p.A99V 0.22 tolerated(0.05) probably_damaging(0.93) TCGA-BR-4370-01 3 196096324 196096324 A - UBXN7 Frame_Shift_Del p.F225Sfs*15 0.17 TCGA-BR-4370-01 3 21552413 21552413 C T ZNF385D Missense_Mutation p.A127T 0.20 tolerated(0.28) benign(0.063) TCGA-BR-4370-01 3 22424080 22424081 - T HMGB1P5 RNA 0.24 TCGA-BR-4370-01 3 37090086 37090086 C T MLH1 Nonsense_Mutation p.R659* 0.20 TCGA-BR-4370-01 3 37514892 37514892 G A ITGA9 Missense_Mutation p.D121N 0.15 deleterious(0.04) benign(0.229) TCGA-BR-4370-01 3 37574910 37574910 C T ITGA9 Silent p.N493N 0.17 TCGA-BR-4370-01 3 37998618 37998618 T C CTDSPL Missense_Mutation p.V84A 0.15 tolerated(0.43) benign(0.001) TCGA-BR-4370-01 3 39227527 39227527 G A XIRP1 Missense_Mutation p.T1137I 0.17 deleterious(0) possibly_damaging(0.64) TCGA-BR-4370-01 3 44488039 44488040 - C ZNF445 3'UTR 0.25 TCGA-BR-4370-01 3 46062693 46062693 C T XCR1 Silent p.T249T 0.14 TCGA-BR-4370-01 3 47162245 47162245 C T SETD2 Missense_Mutation p.G1294D 0.19 deleterious_low_confidence(0.04) benign(0.101) TCGA-BR-4370-01 3 47459204 47459204 G - SCAP Frame_Shift_Del p.L854* 0.32 TCGA-BR-4370-01 3 48510563 48510563 G A SHISA5 Silent p.P222P 0.20 TCGA-BR-4370-01 3 48718986 48718988 CTT - NCKIPSD In_Frame_Del p.E275del 0.13 TCGA-BR-4370-01 3 49049119 49049119 G A WDR6 Missense_Mutation p.R81Q 0.17 tolerated(0.55) benign(0.007) TCGA-BR-4370-01 3 49454819 49454819 G T AMT 3'UTR 0.20 TCGA-BR-4370-01 3 49568875 49568875 C T DAG1 Missense_Mutation p.R311W 0.20 deleterious(0) probably_damaging(0.999) TCGA-BR-4370-01 3 50379246 50379246 C T ZMYND10 Silent p.A372A 0.25 TCGA-BR-4370-01 3 51273835 51273835 C T DOCK3 Silent p.Y659Y 0.12 TCGA-BR-4370-01 3 51431126 51431126 G A RBM15B Missense_Mutation p.A766T 0.25 tolerated(1) benign(0.075) TCGA-BR-4370-01 3 51990299 51990299 C T GPR62 Missense_Mutation p.R211C 0.29 tolerated(0.05) possibly_damaging(0.568) TCGA-BR-4370-01 3 56651196 56651196 G T CCDC66 Nonsense_Mutation p.E634* 0.24 TCGA-BR-4370-01 3 62189088 62189088 C T PTPRG Missense_Mutation p.T540M 0.19 tolerated(0.06) benign(0.005) TCGA-BR-4370-01 3 63973914 63973914 G A ATXN7 Silent p.P425P 0.21 TCGA-BR-4370-01 3 66024037 66024037 C T MAGI1 5'Flank 0.23 TCGA-BR-4370-01 3 69053564 69053564 C T EOGT Silent p.T195T 0.15 TCGA-BR-4370-01 3 73432925 73432925 C T PDZRN3 Missense_Mutation p.R931H 0.23 deleterious(0) probably_damaging(0.999) TCGA-BR-4370-01 3 78766491 78766491 T C ROBO1 Missense_Mutation p.E284G 0.19 deleterious(0.02) possibly_damaging(0.679) TCGA-BR-4370-01 3 98600451 98600451 A T DCBLD2 Missense_Mutation p.D122E 0.17 deleterious_low_confidence(0.01) benign(0.219) TCGA-BR-4370-01 3 99514534 99514534 C - COL8A1 Frame_Shift_Del p.H599Mfs*24 0.26 TCGA-BR-4370-01 4 10445916 10445916 C T ZNF518B Silent p.P679P 0.17 TCGA-BR-4370-01 4 108565999 108565999 C T PAPSS1 Missense_Mutation p.A489T 0.15 deleterious(0) benign(0.159) TCGA-BR-4370-01 4 110635373 110635373 T - PLA2G12A 3'UTR 0.14 TCGA-BR-4370-01 4 111553569 111553569 C T PITX2 Silent p.T38T 0.13 TCGA-BR-4370-01 4 111554160 111554160 G A PITX2 5'UTR 0.17 TCGA-BR-4370-01 4 114251594 114251594 C T ANK2 Silent p.I1031I 0.18 TCGA-BR-4370-01 4 115544628 115544628 G A UGT8 Missense_Mutation p.G198S 0.09 deleterious(0.03) benign(0.36) TCGA-BR-4370-01 4 119203326 119203326 T C PRSS12 Missense_Mutation p.Y798C 0.23 deleterious(0) probably_damaging(0.998) TCGA-BR-4370-01 4 119674003 119674004 - A SEC24D Frame_Shift_Ins p.I488Yfs*4 0.20 TCGA-BR-4370-01 4 120182871 120182871 T - USP53 Frame_Shift_Del p.Y277Ifs*18 0.20 TCGA-BR-4370-01 4 121738035 121738035 C T PRDM5 Missense_Mutation p.R232Q 0.17 deleterious(0.02) benign(0.124) TCGA-BR-4370-01 4 122075821 122075821 C T TNIP3 Missense_Mutation p.R203H 0.15 tolerated(0.55) possibly_damaging(0.573) TCGA-BR-4370-01 4 123097031 123097031 G A KIAA1109 Missense_Mutation p.R107Q 0.16 probably_damaging(0.929) TCGA-BR-4370-01 4 123176343 123176343 C T KIAA1109 Missense_Mutation p.R2095C 0.18 probably_damaging(0.998) TCGA-BR-4370-01 4 123202735 123202735 A - KIAA1109 Frame_Shift_Del p.T2950Pfs*22 0.21 TCGA-BR-4370-01 4 123227182 123227182 C G KIAA1109 Missense_Mutation p.P3275A 0.19 probably_damaging(0.997) TCGA-BR-4370-01 4 123283461 123283461 T - KIAA1109 3'UTR 0.24 TCGA-BR-4370-01 4 123664621 123664621 G A BBS12 Missense_Mutation p.R525H 0.21 deleterious(0.01) probably_damaging(1) TCGA-BR-4370-01 4 126411904 126411904 C T FAT4 Missense_Mutation p.R4643C 0.06 probably_damaging(0.996) TCGA-BR-4370-01 4 134071459 134071459 C T PCDH10 Missense_Mutation p.T55M 0.22 deleterious(0.04) probably_damaging(0.952) TCGA-BR-4370-01 4 13601751 13601751 G A BOD1L1 Missense_Mutation p.T2258M 0.22 probably_damaging(0.999) TCGA-BR-4370-01 4 139140513 139140513 G A SLC7A11 Missense_Mutation p.T218M 0.15 deleterious(0) probably_damaging(0.982) TCGA-BR-4370-01 4 141321537 141321537 T A CLGN Missense_Mutation p.D223V 0.14 deleterious(0) probably_damaging(0.997) TCGA-BR-4370-01 4 145916496 145916496 C T ANAPC10 3'UTR 0.16 TCGA-BR-4370-01 4 146697029 146697029 C T ZNF827 Missense_Mutation p.V869M 0.21 deleterious(0.03) probably_damaging(0.999) TCGA-BR-4370-01 4 154548824 154548824 G A KIAA0922 Missense_Mutation p.V1398I 0.20 tolerated(0.31) benign(0.005) TCGA-BR-4370-01 4 154625419 154625419 T C TLR2 Missense_Mutation p.C454R 0.19 deleterious(0) probably_damaging(1) TCGA-BR-4370-01 4 156617922 156617922 A G GUCY1A3 5'UTR 0.26 TCGA-BR-4370-01 4 157684304 157684304 C T PDGFC Missense_Mutation p.D326N 0.18 deleterious(0) probably_damaging(1) TCGA-BR-4370-01 4 158065087 158065087 G A GLRB Missense_Mutation p.A294T 0.24 deleterious(0.04) probably_damaging(0.952) TCGA-BR-4370-01 4 158233934 158233934 G A GRIA2 Missense_Mutation p.M191I 0.17 tolerated(0.18) benign(0) TCGA-BR-4370-01 4 158233975 158233975 G T GRIA2 Missense_Mutation p.R205L 0.18 deleterious(0.02) benign(0.157) TCGA-BR-4370-01 4 162680595 162680595 T C FSTL5 Missense_Mutation p.H232R 0.22 tolerated(0.52) probably_damaging(0.921) TCGA-BR-4370-01 4 166924664 166924664 C T TLL1 Missense_Mutation p.H252Y 0.18 deleterious(0) possibly_damaging(0.826) TCGA-BR-4370-01 4 167020437 167020437 G A TLL1 Missense_Mutation p.G889R 0.19 deleterious(0) probably_damaging(0.999) TCGA-BR-4370-01 4 169227765 169227765 G A DDX60 Missense_Mutation p.S124L 0.23 deleterious(0) possibly_damaging(0.803) TCGA-BR-4370-01 4 170190147 170190147 G T SH3RF1 Missense_Mutation p.L73M 0.25 deleterious(0) probably_damaging(0.999) TCGA-BR-4370-01 4 177713367 177713367 C T VEGFC Silent p.E33E 0.17 TCGA-BR-4370-01 4 183267888 183267888 C T TENM3 Missense_Mutation p.P106L 0.17 tolerated_low_confidence(0.65) possibly_damaging(0.908) TCGA-BR-4370-01 4 184614172 184614172 G A TRAPPC11 Nonsense_Mutation p.W703* 0.11 TCGA-BR-4370-01 4 185340636 185340636 C A IRF2 Missense_Mutation p.W58C 0.17 deleterious(0) probably_damaging(0.999) TCGA-BR-4370-01 4 186578685 186578685 G - SORBS2 Frame_Shift_Del p.L154Cfs*11 0.25 TCGA-BR-4370-01 4 25760663 25760663 C T SEL1L3 Missense_Mutation p.E995K 0.16 deleterious(0) possibly_damaging(0.888) TCGA-BR-4370-01 4 2641566 2641566 C T FAM193A Silent p.P90P 0.19 TCGA-BR-4370-01 4 27024297 27024297 G A STIM2 Silent p.S648S 0.21 TCGA-BR-4370-01 4 2958520 2958520 T - NOP14 Frame_Shift_Del p.S117Afs*5 0.16 TCGA-BR-4370-01 4 3158843 3158843 T A HTT Missense_Mutation p.S1224T 0.11 benign(0.24) TCGA-BR-4370-01 4 3215861 3215861 C T HTT Silent p.A2317A 0.11 TCGA-BR-4370-01 4 3418813 3418813 A - RGS12 Frame_Shift_Del p.K869Sfs*2 0.38 TCGA-BR-4370-01 4 37636637 37636637 G A RELL1 Silent p.G184G 0.18 TCGA-BR-4370-01 4 4304082 4304082 G A ZBTB49 Silent p.S173S 0.16 TCGA-BR-4370-01 4 48578234 48578234 G A FRYL Missense_Mutation p.P845L 0.18 deleterious(0.04) possibly_damaging(0.812) TCGA-BR-4370-01 4 48622707 48622707 G A FRYL Missense_Mutation p.T88M 0.17 tolerated(0.3) benign(0.304) TCGA-BR-4370-01 4 54249979 54249979 G A FIP1L1 Missense_Mutation p.D90N 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-BR-4370-01 4 54325608 54325608 G A FIP1L1 Missense_Mutation p.A593T 0.19 deleterious_low_confidence(0.03) benign(0.005) TCGA-BR-4370-01 4 62599176 62599176 G A LPHN3 Missense_Mutation p.V367M 0.12 deleterious(0) probably_damaging(1) TCGA-BR-4370-01 4 6349592 6349592 C T PPP2R2C Silent p.L257L 0.21 TCGA-BR-4370-01 4 6588807 6588807 C T MAN2B2 Missense_Mutation p.T159M 0.17 deleterious(0) probably_damaging(0.987) TCGA-BR-4370-01 4 74351751 74351751 G A AFM Missense_Mutation p.C148Y 0.05 deleterious(0) probably_damaging(1) TCGA-BR-4370-01 4 7780516 7780516 C T AFAP1 Missense_Mutation p.A624T 0.19 tolerated(0.62) benign(0.001) TCGA-BR-4370-01 4 7985012 7985012 G A ABLIM2 Silent p.D601D 0.17 TCGA-BR-4370-01 4 81123474 81123474 T C PRDM8 Silent p.G286G 0.17 TCGA-BR-4370-01 4 8216302 8216302 C T SH3TC1 Missense_Mutation p.A159V 0.07 deleterious(0.02) possibly_damaging(0.641) TCGA-BR-4370-01 4 8307814 8307814 G A HTRA3 Missense_Mutation p.R438Q 0.15 deleterious(0) probably_damaging(1) TCGA-BR-4370-01 4 84370022 84370022 C A HELQ Missense_Mutation p.A369S 0.16 deleterious(0) probably_damaging(0.974) TCGA-BR-4370-01 4 85638104 85638104 C A WDFY3 Missense_Mutation p.S2607I 0.15 deleterious(0) possibly_damaging(0.546) TCGA-BR-4370-01 4 85738729 85738729 C T WDFY3 Missense_Mutation p.R568Q 0.16 deleterious(0.01) probably_damaging(0.982) TCGA-BR-4370-01 4 86916593 86916593 C - ARHGAP24 Frame_Shift_Del p.P597Rfs*51 0.19 TCGA-BR-4370-01 4 96761910 96761910 C T PDHA2 Silent p.A203A 0.14 TCGA-BR-4370-01 5 100147676 100147676 C T ST8SIA4 Missense_Mutation p.D319N 0.15 benign(0) TCGA-BR-4370-01 5 102338844 102338845 - A PAM Frame_Shift_Ins p.N576Kfs*13 0.11 TCGA-BR-4370-01 5 110407586 110407586 C T TSLP 5'UTR 0.17 TCGA-BR-4370-01 5 115783233 115783233 G A SEMA6A Silent p.L723L 0.21 TCGA-BR-4370-01 5 123980122 123980122 T - ZNF608 Frame_Shift_Del p.N1313Mfs*8 0.23 TCGA-BR-4370-01 5 131039814 131039814 A - FNIP1 Frame_Shift_Del p.S354Hfs*10 0.17 TCGA-BR-4370-01 5 137729043 137729043 G A KDM3B Missense_Mutation p.R938H 0.17 deleterious(0) probably_damaging(0.999) TCGA-BR-4370-01 5 137893663 137893663 G A HSPA9 Missense_Mutation p.P510S 0.22 deleterious_low_confidence(0.03) probably_damaging(0.999) TCGA-BR-4370-01 5 139061006 139061006 A G CXXC5 Missense_Mutation p.K300E 0.10 deleterious(0.01) possibly_damaging(0.874) TCGA-BR-4370-01 5 139189047 139189047 T C PSD2 Missense_Mutation p.S8P 0.40 tolerated_low_confidence(0.16) benign(0) TCGA-BR-4370-01 5 140048212 140048214 TCT - WDR55 In_Frame_Del p.L135del 0.22 TCGA-BR-4370-01 5 140059380 140059380 T C HARS Missense_Mutation p.D130G 0.12 deleterious(0) probably_damaging(0.993) TCGA-BR-4370-01 5 140216233 140216233 G A PCDHA7 Silent p.R755R 0.25 TCGA-BR-4370-01 5 140262138 140262138 G A PCDHA13 Silent p.L95L 0.17 TCGA-BR-4370-01 5 140503140 140503140 C T PCDHB4 Silent p.Y520Y 0.15 TCGA-BR-4370-01 5 140720770 140720770 C T PCDHGA2 Silent p.D744D 0.17 TCGA-BR-4370-01 5 140735546 140735546 G A PCDHGA4 Missense_Mutation p.R260Q 0.21 tolerated_low_confidence(0.31) benign(0.229) TCGA-BR-4370-01 5 140751583 140751583 C T PCDHGB3 Missense_Mutation p.T541M 0.20 deleterious(0) benign(0.086) TCGA-BR-4370-01 5 140754301 140754301 C T PCDHGA6 Silent p.G217G 0.19 TCGA-BR-4370-01 5 140869617 140869617 C T PCDHGC5 Silent p.D270D 0.19 TCGA-BR-4370-01 5 141335044 141335044 G A PCDH12 Silent p.V791V 0.19 TCGA-BR-4370-01 5 14363855 14363855 C T TRIO Silent p.L802L 0.18 TCGA-BR-4370-01 5 148745703 148745703 G A PCYOX1L Missense_Mutation p.M223I 0.12 tolerated(1) benign(0.012) TCGA-BR-4370-01 5 149210433 149210433 G A PPARGC1B Missense_Mutation p.R190Q 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-BR-4370-01 5 151042996 151042996 G A SPARC 3'UTR 0.18 TCGA-BR-4370-01 5 153026617 153026617 C T GRIA1 Missense_Mutation p.T127I 0.19 tolerated(0.22) possibly_damaging(0.716) TCGA-BR-4370-01 5 156672939 156672939 G A ITK Silent p.P521P 0.20 TCGA-BR-4370-01 5 156673004 156673004 C T ITK Missense_Mutation p.S543L 0.16 deleterious(0) probably_damaging(0.999) TCGA-BR-4370-01 5 156816213 156816213 G A CYFIP2 Missense_Mutation p.R1049H 0.16 deleterious(0.01) probably_damaging(0.932) TCGA-BR-4370-01 5 158267047 158267047 C T EBF1 Missense_Mutation p.R209Q 0.15 deleterious(0.01) probably_damaging(0.991) TCGA-BR-4370-01 5 160753482 160753482 A - GABRB2 Frame_Shift_Del p.Y362Ifs*45 0.21 TCGA-BR-4370-01 5 160838047 160838047 C T GABRB2 Missense_Mutation p.A159T 0.21 deleterious(0) possibly_damaging(0.903) TCGA-BR-4370-01 5 169714973 169714973 C T LCP2 Splice_Site p.X63_splice 0.19 TCGA-BR-4370-01 5 172744894 172744894 C T STC2 Missense_Mutation p.E289K 0.22 tolerated_low_confidence(0.21) benign(0.025) TCGA-BR-4370-01 5 176017671 176017672 - GT CDHR2 Frame_Shift_Ins p.R1178Cfs*12 0.19 TCGA-BR-4370-01 5 176309124 176309124 G A HK3 Silent p.T686T 0.20 TCGA-BR-4370-01 5 176795177 176795177 C T RGS14 Silent p.N253N 0.24 TCGA-BR-4370-01 5 176823997 176823997 T C SLC34A1 Silent p.G446G 0.21 TCGA-BR-4370-01 5 177580535 177580535 C T NHP2 Missense_Mutation p.G63R 0.19 deleterious(0.02) possibly_damaging(0.796) TCGA-BR-4370-01 5 178311021 178311021 G A ZNF354B Missense_Mutation p.R523Q 0.17 tolerated(0.31) benign(0.023) TCGA-BR-4370-01 5 180218922 180218922 C T MGAT1 Silent p.Q350Q 0.22 TCGA-BR-4370-01 5 1879904 1879904 C T IRX4 Silent p.T150T 0.17 TCGA-BR-4370-01 5 31534451 31534451 G A C5orf22 Missense_Mutation p.D52N 0.21 deleterious(0) probably_damaging(0.992) TCGA-BR-4370-01 5 35921207 35921207 G A CAPSL Missense_Mutation p.R6C 0.18 deleterious(0) probably_damaging(0.973) TCGA-BR-4370-01 5 36958222 36958222 C A NIPBL Missense_Mutation p.L83I 0.06 deleterious(0.02) probably_damaging(0.991) TCGA-BR-4370-01 5 52227934 52227934 G A ITGA1 Silent p.P943P 0.13 TCGA-BR-4370-01 5 54589966 54589966 T - DHX29 Frame_Shift_Del p.K220Rfs*8 0.11 TCGA-BR-4370-01 5 66459966 66459966 C T MAST4 Silent p.L1653L 0.12 TCGA-BR-4370-01 5 6754978 6754978 C T PAPD7 Missense_Mutation p.H517Y 0.11 tolerated_low_confidence(0.14) benign(0.05) TCGA-BR-4370-01 5 68473458 68473458 A G CCNB1 Silent p.%3D 0.04 TCGA-BR-4370-01 5 74647031 74647031 A G HMGCR Silent p.T360T 0.15 TCGA-BR-4370-01 5 79033262 79033262 T C CMYA5 Missense_Mutation p.Y2892H 0.25 probably_damaging(0.984) TCGA-BR-4370-01 5 82818051 82818051 C T VCAN Missense_Mutation p.T1309M 0.17 deleterious(0) probably_damaging(0.996) TCGA-BR-4370-01 5 83680326 83680326 C T EDIL3 5'UTR 0.25 TCGA-BR-4370-01 5 90124781 90124781 T - GPR98 Frame_Shift_Del p.F5465Lfs*13 0.22 TCGA-BR-4370-01 5 92923980 92923980 C T NR2F1 Missense_Mutation p.A274V 0.23 deleterious(0.02) possibly_damaging(0.744) TCGA-BR-4370-01 5 93217343 93217343 C A FAM172A Nonsense_Mutation p.E207* 0.11 TCGA-BR-4370-01 5 98115503 98115503 G T RGMB Missense_Mutation p.R160M 0.19 deleterious(0) probably_damaging(1) TCGA-BR-4370-01 6 100390836 100390836 G A MCHR2 Silent p.D192D 0.18 TCGA-BR-4370-01 6 106968459 106968461 AAG - AIM1 In_Frame_Del p.K719del 0.24 TCGA-BR-4370-01 6 107390065 107390065 A G BEND3 Missense_Mutation p.L777P 0.24 deleterious(0.01) probably_damaging(0.979) TCGA-BR-4370-01 6 110763711 110763711 T - SLC22A16 Frame_Shift_Del p.I307* 0.25 TCGA-BR-4370-01 6 112430676 112430676 G A LAMA4 Silent p.S1812S 0.11 TCGA-BR-4370-01 6 112450166 112450166 T - LAMA4 Frame_Shift_Del p.G1416Efs*29 0.21 TCGA-BR-4370-01 6 117113654 117113654 G A GPRC6A Missense_Mutation p.P811L 0.12 deleterious(0.04) benign(0.443) TCGA-BR-4370-01 6 132618385 132618385 C T MOXD1 Silent p.T583T 0.17 TCGA-BR-4370-01 6 13365237 13365237 C T GFOD1 Missense_Mutation p.R304H 0.18 deleterious(0.02) benign(0.001) TCGA-BR-4370-01 6 139488244 139488244 C T HECA Silent p.H365H 0.15 TCGA-BR-4370-01 6 144759980 144759980 C - UTRN Frame_Shift_Del p.L449Wfs*5 0.18 TCGA-BR-4370-01 6 144898290 144898290 C T UTRN Missense_Mutation p.R2449C 0.16 tolerated(0.18) benign(0.014) TCGA-BR-4370-01 6 149285818 149285818 C T UST Intron 0.17 TCGA-BR-4370-01 6 151152273 151152273 C T PLEKHG1 Missense_Mutation p.R676W 0.23 deleterious(0) probably_damaging(0.996) TCGA-BR-4370-01 6 155597113 155597113 C T CLDN20 Missense_Mutation p.A87V 0.06 deleterious(0.01) probably_damaging(0.938) TCGA-BR-4370-01 6 157528284 157528284 G - ARID1B Frame_Shift_Del p.V2005Wfs*16 0.22 TCGA-BR-4370-01 6 158066823 158066823 A G ZDHHC14 Silent p.S269S 0.25 TCGA-BR-4370-01 6 159653470 159653470 C T FNDC1 Silent p.N642N 0.16 TCGA-BR-4370-01 6 160219129 160219129 C T MRPL18 Missense_Mutation p.R173W 0.12 deleterious(0.01) benign(0.324) TCGA-BR-4370-01 6 161771140 161771140 G A PARK2 Silent p.F463F 0.17 TCGA-BR-4370-01 6 16306662 16306662 C A ATXN1 Silent p.L782L 0.14 TCGA-BR-4370-01 6 165706906 165706906 T A C6orf118 Silent p.R372R 0.20 TCGA-BR-4370-01 6 165715084 165715084 C T C6orf118 Missense_Mutation p.A243T 0.20 tolerated(0.65) benign(0.002) TCGA-BR-4370-01 6 168443281 168443281 G A KIF25 Silent p.A290A 0.16 TCGA-BR-4370-01 6 169051445 169051447 CCT - SMOC2 In_Frame_Del p.S346del 0.15 TCGA-BR-4370-01 6 170592774 170592774 G A DLL1 Silent p.D531D 0.12 TCGA-BR-4370-01 6 17507411 17507411 C T CAP2 Silent p.A104A 0.19 TCGA-BR-4370-01 6 17543142 17543142 C T CAP2 Silent p.C359C 0.20 TCGA-BR-4370-01 6 18122675 18122675 C T NHLRC1 Missense_Mutation p.V55M 0.10 deleterious(0) probably_damaging(0.997) TCGA-BR-4370-01 6 26448537 26448537 G A BTN3A3 Silent p.S259S 0.19 TCGA-BR-4370-01 6 27101205 27101205 A C HIST1H2AG Missense_Mutation p.K119Q 0.13 deleterious_low_confidence(0.01) benign(0.191) TCGA-BR-4370-01 6 27783226 27783226 C A HIST1H2BM 3'UTR 0.26 TCGA-BR-4370-01 6 28056479 28056479 C T ZNF165 Missense_Mutation p.A230V 0.17 tolerated(0.27) benign(0.081) TCGA-BR-4370-01 6 28269913 28269913 T - PGBD1 Frame_Shift_Del p.L762Wfs*2 0.20 TCGA-BR-4370-01 6 29142310 29142310 G - OR2J2 Frame_Shift_Del p.A301Qfs*? 0.21 TCGA-BR-4370-01 6 29694737 29694737 T C HLA-F Missense_Mutation p.Y372H 0.26 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-BR-4370-01 6 29975983 29975983 C T ZNRD1-AS1 Intron 0.17 TCGA-BR-4370-01 6 30303703 30303703 C T TRIM39 Missense_Mutation p.A244V 0.20 tolerated(0.13) benign(0.002) TCGA-BR-4370-01 6 30554267 30554267 C A ABCF1 Nonsense_Mutation p.Y634* 0.14 TCGA-BR-4370-01 6 30569867 30569867 G A PPP1R10 Silent p.H853H 0.17 TCGA-BR-4370-01 6 30574379 30574379 C T PPP1R10 Missense_Mutation p.R167Q 0.20 deleterious(0.05) benign(0.129) TCGA-BR-4370-01 6 31584597 31584597 C A AIF1 Missense_Mutation p.L122M 0.21 tolerated(0.41) probably_damaging(0.999) TCGA-BR-4370-01 6 31606863 31606863 G - BAG6 3'UTR 0.24 TCGA-BR-4370-01 6 31696699 31696699 C A DDAH2 Silent p.V80V 0.18 TCGA-BR-4370-01 6 31931880 31931880 G A SKIV2L Missense_Mutation p.G613D 0.16 tolerated(0.07) possibly_damaging(0.788) TCGA-BR-4370-01 6 31934881 31934881 G - SKIV2L Frame_Shift_Del p.E816Rfs*3 0.20 TCGA-BR-4370-01 6 31939231 31939231 G - DXO Frame_Shift_Del p.T75Lfs*54 0.26 TCGA-BR-4370-01 6 32008351 32008351 C T CYP21A2 Missense_Mutation p.R370W 0.25 deleterious(0) probably_damaging(0.995) TCGA-BR-4370-01 6 32117088 32117088 C T PRRT1 Missense_Mutation p.V278M 0.21 deleterious(0.01) possibly_damaging(0.621) TCGA-BR-4370-01 6 3273381 3273381 C T SLC22A23 Missense_Mutation p.E657K 0.13 tolerated(0.16) benign(0.362) TCGA-BR-4370-01 6 33178990 33178990 G - RING1 Frame_Shift_Del p.E173Kfs*14 0.24 TCGA-BR-4370-01 6 33658886 33658886 G T ITPR3 Missense_Mutation p.A2409S 0.21 tolerated(0.48) benign(0.003) TCGA-BR-4370-01 6 35392119 35392119 A T PPARD Missense_Mutation p.H214L 0.12 deleterious(0.01) benign(0.164) TCGA-BR-4370-01 6 36193095 36193095 A T BRPF3 Missense_Mutation p.E1078V 0.15 deleterious(0.01) possibly_damaging(0.788) TCGA-BR-4370-01 6 37619886 37619886 G T MDGA1 Missense_Mutation p.L405M 0.17 tolerated(0.16) probably_damaging(0.99) TCGA-BR-4370-01 6 39272281 39272281 C - KCNK17 Frame_Shift_Del p.G168Afs*61 0.22 TCGA-BR-4370-01 6 41562617 41562617 C T FOXP4 Missense_Mutation p.R516C 0.19 deleterious(0) probably_damaging(0.993) TCGA-BR-4370-01 6 41751963 41751963 C T PRICKLE4 Missense_Mutation p.P76L 0.18 deleterious(0.01) probably_damaging(0.931) TCGA-BR-4370-01 6 41889330 41889330 G - BYSL Frame_Shift_Del p.G12Vfs*43 0.17 TCGA-BR-4370-01 6 43230733 43230733 T C TTBK1 Missense_Mutation p.V544A 0.12 probably_damaging(0.992) TCGA-BR-4370-01 6 43270090 43270090 C T SLC22A7 Missense_Mutation p.T405M 0.26 deleterious(0.02) probably_damaging(0.984) TCGA-BR-4370-01 6 50810964 50810964 C T TFAP2B Silent p.L414L 0.18 TCGA-BR-4370-01 6 56485219 56485219 T A DST Intron 0.21 TCGA-BR-4370-01 6 56505005 56505005 A C DST Nonsense_Mutation p.L272* 0.16 TCGA-BR-4370-01 6 66054021 66054021 C T EYS Silent p.L503L 0.20 TCGA-BR-4370-01 6 7231875 7231875 C T RREB1 Silent p.I1181I 0.13 TCGA-BR-4370-01 6 74497026 74497026 G T CD109 Missense_Mutation p.G803C 0.21 tolerated(0.07) possibly_damaging(0.682) TCGA-BR-4370-01 6 7583008 7583008 G A DSP Missense_Mutation p.R1838H 0.18 possibly_damaging(0.55) TCGA-BR-4370-01 6 80751910 80751910 A - TTK Frame_Shift_Del p.K857Nfs*36 0.22 TCGA-BR-4370-01 6 82891683 82891683 T - IBTK Frame_Shift_Del p.K1213Sfs*50 0.32 TCGA-BR-4370-01 6 99729068 99729068 T G FAXC Missense_Mutation p.D401A 0.21 tolerated_low_confidence(0.05) benign(0.085) TCGA-BR-4370-01 6 99849343 99849343 T - PNISR Frame_Shift_Del p.E498Sfs*85 0.17 TCGA-BR-4370-01 7 100361492 100361492 G A ZAN Silent p.S1350S 0.15 TCGA-BR-4370-01 7 100677551 100677551 A G MUC17 Missense_Mutation p.S952G 0.02 benign(0.148) TCGA-BR-4370-01 7 101921277 101921277 C T CUX1 Missense_Mutation p.R539C 0.16 deleterious(0) probably_damaging(0.928) TCGA-BR-4370-01 7 101925162 101925162 C T SH2B2 5'Flank 0.11 TCGA-BR-4370-01 7 102953336 102953336 T G PMPCB 3'UTR 0.18 TCGA-BR-4370-01 7 103155812 103155812 C T RELN Missense_Mutation p.G2647S 0.12 tolerated(0.12) probably_damaging(0.999) TCGA-BR-4370-01 7 103163922 103163922 G A RELN Missense_Mutation p.T2469I 0.18 tolerated(0.06) benign(0.328) TCGA-BR-4370-01 7 105182968 105182968 C T RINT1 Silent p.S129S 0.07 TCGA-BR-4370-01 7 105516960 105516960 A G ATXN7L1 Silent p.A15A 0.16 TCGA-BR-4370-01 7 107559493 107559493 G A DLD Silent p.L471L 0.06 TCGA-BR-4370-01 7 107818475 107818475 C T NRCAM Silent p.P978P 0.15 TCGA-BR-4370-01 7 1131745 1131745 C T GPER1 Silent p.A127A 0.25 TCGA-BR-4370-01 7 113519666 113519666 G A PPP1R3A Missense_Mutation p.S494L 0.17 tolerated(0.64) benign(0.053) TCGA-BR-4370-01 7 116165024 116165024 C T CAV1 5'UTR 0.12 TCGA-BR-4370-01 7 116199361 116199361 A C CAV1 3'UTR 0.13 TCGA-BR-4370-01 7 117304765 117304766 AC - CFTR Frame_Shift_Del p.Q1330Vfs*6 0.20 TCGA-BR-4370-01 7 123516944 123516944 C T HYAL4 Missense_Mutation p.A394V 0.16 deleterious(0) benign(0.44) TCGA-BR-4370-01 7 127013702 127013702 T - ZNF800 Frame_Shift_Del p.K563Sfs*7 0.19 TCGA-BR-4370-01 7 127222456 127222456 G A GCC1 Missense_Mutation p.A647V 0.16 deleterious(0.04) benign(0.002) TCGA-BR-4370-01 7 127724851 127724851 C - SND1 Frame_Shift_Del p.R731Afs*11 0.21 TCGA-BR-4370-01 7 127729627 127729627 C T SND1 Silent p.A835A 0.08 TCGA-BR-4370-01 7 128097324 128097324 T C HILPDA Translation_Start_Site p.M1? 0.10 deleterious_low_confidence(0) benign(0.402) TCGA-BR-4370-01 7 130353673 130353673 C G TSGA13 3'UTR 0.13 TCGA-BR-4370-01 7 130356601 130356601 G A TSGA13 Silent p.S186S 0.17 TCGA-BR-4370-01 7 131148074 131148075 - A MKLN1 Frame_Shift_Ins p.N543Kfs*3 0.13 TCGA-BR-4370-01 7 131172535 131172535 G A MKLN1 3'UTR 0.20 TCGA-BR-4370-01 7 131191478 131191478 C - PODXL Frame_Shift_Del p.G370Afs*7 0.22 TCGA-BR-4370-01 7 132973839 132973839 G A EXOC4 Missense_Mutation p.S147N 0.17 tolerated(0.15) benign(0.001) TCGA-BR-4370-01 7 134632499 134632499 C T CALD1 Silent p.A591A 0.16 TCGA-BR-4370-01 7 140156541 140156541 G A MKRN1 Silent p.F299F 0.13 TCGA-BR-4370-01 7 141727518 141727518 G A MGAM Missense_Mutation p.A402T 0.21 tolerated(0.51) benign(0.393) TCGA-BR-4370-01 7 142240018 142240018 A T TRBV9 5'UTR 0.08 TCGA-BR-4370-01 7 142564290 142564290 C T EPHB6 Missense_Mutation p.T505M 0.09 deleterious(0) probably_damaging(1) TCGA-BR-4370-01 7 144098303 144098303 C T NOBOX Missense_Mutation p.R227H 0.12 tolerated(0.23) benign(0.018) TCGA-BR-4370-01 7 146471423 146471423 C - CNTNAP2 Frame_Shift_Del p.I54Sfs*12 0.16 TCGA-BR-4370-01 7 148801229 148801229 G A ZNF425 Silent p.D578D 0.22 TCGA-BR-4370-01 7 149545202 149545202 C T ZNF862 Missense_Mutation p.A207V 0.08 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BR-4370-01 7 150324759 150324759 G - GIMAP6 3'UTR 0.16 TCGA-BR-4370-01 7 150730745 150730745 G A ABCB8 Missense_Mutation p.R50Q 0.12 tolerated_low_confidence(0.08) benign(0.041) TCGA-BR-4370-01 7 150839596 150839596 C G AGAP3 Silent p.S716S 0.18 TCGA-BR-4370-01 7 151135151 151135151 G A CRYGN Silent p.G67G 0.22 TCGA-BR-4370-01 7 154684412 154684412 C T DPP6 3'UTR 0.09 TCGA-BR-4370-01 7 156436577 156436577 A - RNF32 Frame_Shift_Del p.N4Ifs*49 0.21 TCGA-BR-4370-01 7 157931052 157931052 C A PTPRN2 Missense_Mutation p.A356S 0.20 tolerated(0.6) benign(0.077) TCGA-BR-4370-01 7 158738447 158738447 C T WDR60 Missense_Mutation p.P1060S 0.11 tolerated_low_confidence(0.29) benign(0) TCGA-BR-4370-01 7 1594988 1594988 C - TMEM184A Frame_Shift_Del p.A45Pfs*92 0.26 TCGA-BR-4370-01 7 16502286 16502286 G A SOSTDC1 Missense_Mutation p.R170W 0.19 deleterious(0) probably_damaging(0.998) TCGA-BR-4370-01 7 16502300 16502300 C T SOSTDC1 Missense_Mutation p.C165Y 0.18 deleterious(0) probably_damaging(0.996) TCGA-BR-4370-01 7 21760398 21760398 G A DNAH11 Missense_Mutation p.S2404N 0.08 probably_damaging(0.979) TCGA-BR-4370-01 7 21940967 21940967 T C DNAH11 3'UTR 0.21 TCGA-BR-4370-01 7 23741751 23741751 G A FAM221A Missense_Mutation p.A289T 0.15 deleterious_low_confidence(0.02) benign(0.197) TCGA-BR-4370-01 7 2472943 2472943 C T CHST12 Silent p.Y223Y 0.22 TCGA-BR-4370-01 7 2580614 2580614 G A BRAT1 Missense_Mutation p.T465M 0.24 tolerated(0.14) benign(0.025) TCGA-BR-4370-01 7 27140938 27140938 G T HOXA2 Missense_Mutation p.L180M 0.17 deleterious(0) probably_damaging(1) TCGA-BR-4370-01 7 27147924 27147924 C T HOXA3 Silent p.A314A 0.21 TCGA-BR-4370-01 7 27150221 27150221 G A HOXA3 Silent p.Y13Y 0.17 TCGA-BR-4370-01 7 27204724 27204724 G A HOXA9 Missense_Mutation p.A118V 0.19 tolerated(0.07) benign(0.105) TCGA-BR-4370-01 7 31016143 31016143 C - GHRHR Frame_Shift_Del p.L360Wfs*24 0.18 TCGA-BR-4370-01 7 37901657 37901657 G T NME8 Missense_Mutation p.G100C 0.14 deleterious(0) probably_damaging(0.999) TCGA-BR-4370-01 7 38357047 38357047 C T TRGV9 Splice_Site p.X16_splice 0.25 TCGA-BR-4370-01 7 42005905 42005905 C T GLI3 Silent p.T922T 0.08 TCGA-BR-4370-01 7 4285309 4285310 - C SDK1 Frame_Shift_Ins p.P2087Tfs*4 0.09 TCGA-BR-4370-01 7 44112960 44112960 G A POLM Missense_Mutation p.A472V 0.08 tolerated(0.3) benign(0.006) TCGA-BR-4370-01 7 44734127 44734127 C T OGDH Silent p.Y540Y 0.13 TCGA-BR-4370-01 7 47343041 47343041 G A TNS3 Silent p.F988F 0.07 TCGA-BR-4370-01 7 47879214 47879214 C T PKD1L1 Missense_Mutation p.D1867N 0.17 tolerated(0.38) benign(0.048) TCGA-BR-4370-01 7 48092305 48092305 A - C7orf57 Frame_Shift_Del p.N207Tfs*92 0.10 TCGA-BR-4370-01 7 4841602 4841602 C T RADIL Missense_Mutation p.G842R 0.12 tolerated(0.09) benign(0.009) TCGA-BR-4370-01 7 4901260 4901260 C T PAPOLB Missense_Mutation p.R60H 0.20 tolerated(1) benign(0.028) TCGA-BR-4370-01 7 4949602 4949602 G A MMD2 Silent p.G173G 0.13 TCGA-BR-4370-01 7 51096436 51096437 CT - COBL Frame_Shift_Del p.S786Lfs*38 0.27 TCGA-BR-4370-01 7 5327554 5327554 C A SLC29A4 Missense_Mutation p.A36E 0.16 tolerated(0.76) benign(0.002) TCGA-BR-4370-01 7 54610382 54610382 C T VSTM2A 5'UTR 0.15 TCGA-BR-4370-01 7 5540290 5540290 G A FBXL18 Missense_Mutation p.T537M 0.15 deleterious(0) probably_damaging(0.999) TCGA-BR-4370-01 7 56007338 56007338 G A ZNF713 Missense_Mutation p.R311H 0.12 tolerated(0.08) probably_damaging(0.993) TCGA-BR-4370-01 7 5643549 5643549 C T FSCN1 Silent p.R389R 0.15 TCGA-BR-4370-01 7 70254984 70254984 G A AUTS2 Missense_Mutation p.A928T 0.12 tolerated(0.64) benign(0.002) TCGA-BR-4370-01 7 70885914 70885914 G A WBSCR17 Missense_Mutation p.R262H 0.14 deleterious(0) probably_damaging(0.997) TCGA-BR-4370-01 7 72738631 72738631 C T TRIM50 Missense_Mutation p.R52H 0.15 tolerated(0.26) probably_damaging(0.932) TCGA-BR-4370-01 7 73106929 73106929 C T WBSCR22 Missense_Mutation p.R155W 0.15 deleterious(0) probably_damaging(0.94) TCGA-BR-4370-01 7 75167425 75167425 C T HIP1 3'UTR 0.13 TCGA-BR-4370-01 7 81667519 81667519 A - CACNA2D1 Frame_Shift_Del p.Q305Sfs*8 0.08 TCGA-BR-4370-01 7 82387901 82387901 T C PCLO Missense_Mutation p.Q5140R 0.08 unknown(0) TCGA-BR-4370-01 7 82595405 82595405 C T PCLO Silent p.K1233K 0.12 TCGA-BR-4370-01 7 86811625 86811625 C T DMTF1 Silent p.C264C 0.11 TCGA-BR-4370-01 7 87765316 87765316 C T ADAM22 Missense_Mutation p.T397M 0.09 tolerated(0.06) benign(0.006) TCGA-BR-4370-01 7 89866228 89866228 C T STEAP2 3'UTR 0.14 TCGA-BR-4370-01 7 89939548 89939548 C T C7orf63 Missense_Mutation p.T941M 0.20 deleterious_low_confidence(0) probably_damaging(0.917) TCGA-BR-4370-01 7 92732292 92732292 C T SAMD9 Missense_Mutation p.R1040H 0.15 tolerated(0.05) benign(0.287) TCGA-BR-4370-01 7 94052330 94052330 G A COL1A2 Missense_Mutation p.R822H 0.17 unknown(0) TCGA-BR-4370-01 7 94917878 94917878 A G PPP1R9A Missense_Mutation p.S1254G 0.19 tolerated(0.08) possibly_damaging(0.452) TCGA-BR-4370-01 7 97821441 97821441 T C LMTK2 Missense_Mutation p.L555S 0.17 deleterious(0) probably_damaging(1) TCGA-BR-4370-01 7 98935830 98935830 G A ARPC1A Missense_Mutation p.E31K 0.09 deleterious(0.05) benign(0.041) TCGA-BR-4370-01 7 99702683 99702683 T C AP4M1 Missense_Mutation p.L230S 0.17 deleterious(0) probably_damaging(0.951) TCGA-BR-4370-01 8 103297394 103297394 G A UBR5 Missense_Mutation p.A1886V 0.14 tolerated(0.1) possibly_damaging(0.557) TCGA-BR-4370-01 8 104342161 104342161 C - FZD6 Frame_Shift_Del p.R609Gfs*2 0.26 TCGA-BR-4370-01 8 104432678 104432678 C T DCAF13 Missense_Mutation p.A238V 0.11 deleterious(0.01) possibly_damaging(0.821) TCGA-BR-4370-01 8 10555303 10555303 A G C8orf74 Missense_Mutation p.M146V 0.14 tolerated(1) benign(0.002) TCGA-BR-4370-01 8 10583952 10583952 C - SOX7 Frame_Shift_Del p.A207Rfs*116 0.21 TCGA-BR-4370-01 8 10756078 10756078 C T XKR6 Missense_Mutation p.R437Q 0.17 deleterious(0.01) probably_damaging(0.91) TCGA-BR-4370-01 8 107758067 107758067 T C OXR1 Silent p.D822D 0.20 TCGA-BR-4370-01 8 120847083 120847083 C T DSCC1 3'UTR 0.13 TCGA-BR-4370-01 8 121514827 121514828 - A MTBP Frame_Shift_Ins p.T571Nfs*2 0.22 TCGA-BR-4370-01 8 124140619 124140619 C T TBC1D31 Silent p.S661S 0.17 TCGA-BR-4370-01 8 125498442 125498442 G A RNF139 Silent p.L184L 0.19 TCGA-BR-4370-01 8 126051080 126051080 G A KIAA0196 Silent p.L1026L 0.08 TCGA-BR-4370-01 8 128753090 128753090 C T MYC Silent p.Y417Y 0.16 TCGA-BR-4370-01 8 131792892 131792892 G A ADCY8 Missense_Mutation p.T1167M 0.13 deleterious(0) benign(0.027) TCGA-BR-4370-01 8 134471968 134471968 G A ST3GAL1 3'UTR 0.11 TCGA-BR-4370-01 8 140630719 140630719 G A KCNK9 Missense_Mutation p.R303C 0.16 deleterious(0) possibly_damaging(0.582) TCGA-BR-4370-01 8 141542570 141542570 C T AGO2 Missense_Mutation p.A806T 0.10 deleterious(0) probably_damaging(0.998) TCGA-BR-4370-01 8 142222546 142222546 C - SLC45A4 Frame_Shift_Del p.G633Afs*25 0.31 TCGA-BR-4370-01 8 143427220 143427220 C T TSNARE1 Missense_Mutation p.R41H 0.10 tolerated_low_confidence(0.22) benign(0.01) TCGA-BR-4370-01 8 143961145 143961145 C T CYP11B1 Missense_Mutation p.A29T 0.12 tolerated(0.16) benign(0.008) TCGA-BR-4370-01 8 144621326 144621326 G A ZC3H3 Missense_Mutation p.R71C 0.04 deleterious(0.02) probably_damaging(1) TCGA-BR-4370-01 8 144652140 144652140 G T MROH6 Missense_Mutation p.A380D 0.09 deleterious(0) probably_damaging(1) TCGA-BR-4370-01 8 144941378 144941378 C - EPPK1 Frame_Shift_Del p.G2015Vfs*36 0.19 TCGA-BR-4370-01 8 144946637 144946637 C T EPPK1 Missense_Mutation p.R262Q 0.28 benign(0) TCGA-BR-4370-01 8 144996013 144996013 T C PLEC Missense_Mutation p.Q2796R 0.18 benign(0.008) TCGA-BR-4370-01 8 145113480 145113480 C T OPLAH Silent p.T234T 0.21 TCGA-BR-4370-01 8 145738055 145738055 C - RECQL4 Frame_Shift_Del p.G952Afs*92 0.25 TCGA-BR-4370-01 8 145771183 145771183 G A ARHGAP39 Silent p.L657L 0.14 TCGA-BR-4370-01 8 2040280 2040280 C T MYOM2 Silent p.Y645Y 0.19 TCGA-BR-4370-01 8 21769786 21769786 G A DOK2 Missense_Mutation p.A100V 0.16 tolerated(0.15) benign(0.009) TCGA-BR-4370-01 8 21960514 21960514 G A FAM160B2 3'UTR 0.25 TCGA-BR-4370-01 8 21983112 21983112 G A HR Silent p.H513H 0.20 TCGA-BR-4370-01 8 23190950 23190950 G A LOXL2 Silent p.D310D 0.18 TCGA-BR-4370-01 8 24333950 24333950 G A ADAM7 Missense_Mutation p.R213H 0.11 tolerated(0.26) benign(0.063) TCGA-BR-4370-01 8 24771772 24771772 G A NEFM Missense_Mutation p.E156K 0.13 deleterious(0) unknown(0) TCGA-BR-4370-01 8 25365223 25365223 G T CDCA2 Missense_Mutation p.R1014M 0.16 deleterious(0.01) possibly_damaging(0.855) TCGA-BR-4370-01 8 28989881 28989881 G T KIF13B Missense_Mutation p.N962K 0.15 tolerated(0.17) probably_damaging(0.939) TCGA-BR-4370-01 8 30700994 30700994 G A TEX15 Missense_Mutation p.S1847L 0.14 tolerated(0.11) benign(0.044) TCGA-BR-4370-01 8 32505672 32505672 A G NRG1 Intron 0.17 TCGA-BR-4370-01 8 36766851 36766851 A T KCNU1 Missense_Mutation p.Y710F 0.15 tolerated(0.69) benign(0.024) TCGA-BR-4370-01 8 38146944 38146945 - T WHSC1L1 Frame_Shift_Ins p.N1066Kfs*14 0.13 TCGA-BR-4370-01 8 38852991 38852991 G A TM2D2 Intron 0.15 TCGA-BR-4370-01 8 39624771 39624771 C A ADAM2 Splice_Site p.X405_splice 0.15 TCGA-BR-4370-01 8 41522619 41522619 T G ANK1 Intron 0.28 TCGA-BR-4370-01 8 42940431 42940431 T C FNTA 3'UTR 0.17 TCGA-BR-4370-01 8 49647703 49647703 C T EFCAB1 Missense_Mutation p.R3H 0.12 deleterious(0) probably_damaging(0.977) TCGA-BR-4370-01 8 52321597 52321597 C T PXDNL Missense_Mutation p.A863T 0.15 tolerated(0.23) benign(0.016) TCGA-BR-4370-01 8 53071553 53071553 G - ST18 Frame_Shift_Del p.H571Tfs*2 0.22 TCGA-BR-4370-01 8 55372549 55372549 C T SOX17 Silent p.D413D 0.10 TCGA-BR-4370-01 8 55540279 55540279 T - RP1 Frame_Shift_Del p.P1282Lfs*12 0.20 TCGA-BR-4370-01 8 55542107 55542107 C T RP1 Nonsense_Mutation p.Q1889* 0.16 TCGA-BR-4370-01 8 57358557 57358557 G A PENK 5'UTR 0.20 TCGA-BR-4370-01 8 623865 623865 T - ERICH1 Frame_Shift_Del p.R163Gfs*3 0.21 TCGA-BR-4370-01 8 6371315 6371315 C T ANGPT2 Silent p.S361S 0.11 TCGA-BR-4370-01 8 65494237 65494237 C T BHLHE22 Missense_Mutation p.A297V 0.16 deleterious(0.01) possibly_damaging(0.734) TCGA-BR-4370-01 8 67405817 67405817 C T C8orf46 5'UTR 0.21 TCGA-BR-4370-01 8 67763157 67763157 T C SGK3 Splice_Site p.X440_splice 0.27 TCGA-BR-4370-01 8 67929861 67929861 T C PPP1R42 Missense_Mutation p.D41G 0.11 deleterious(0) benign(0.029) TCGA-BR-4370-01 8 68138302 68138302 G A ARFGEF1 Nonsense_Mutation p.R1345* 0.13 TCGA-BR-4370-01 8 69017611 69017611 G C PREX2 Intron 0.10 TCGA-BR-4370-01 8 70570765 70570765 G T SULF1 Missense_Mutation p.G871C 0.18 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-BR-4370-01 8 75227703 75227703 C T JPH1 Missense_Mutation p.D178N 0.21 deleterious(0.04) benign(0.118) TCGA-BR-4370-01 8 77763477 77763477 A - ZFHX4 Frame_Shift_Del p.K1442Nfs*10 0.15 TCGA-BR-4370-01 8 82586109 82586109 T C IMPA1 Missense_Mutation p.N201D 0.13 deleterious(0.04) benign(0.028) TCGA-BR-4370-01 8 8654933 8654933 G A MFHAS1 Nonsense_Mutation p.R1023* 0.17 TCGA-BR-4370-01 8 90965666 90965666 T - NBN Frame_Shift_Del p.R551Gfs*8 0.15 TCGA-BR-4370-01 8 95848830 95848830 T - INTS8 Frame_Shift_Del p.F279Lfs*6 0.15 TCGA-BR-4370-01 8 99148887 99148887 A - POP1 Frame_Shift_Del p.I399Lfs*23 0.13 TCGA-BR-4370-01 8 99149090 99149090 G A POP1 Missense_Mutation p.D424N 0.10 deleterious(0.01) probably_damaging(0.995) TCGA-BR-4370-01 8 99149097 99149097 C T POP1 Missense_Mutation p.T426M 0.16 deleterious(0) probably_damaging(0.981) TCGA-BR-4370-01 8 99441361 99441361 C T KCNS2 Missense_Mutation p.T385M 0.16 deleterious(0.04) benign(0.342) TCGA-BR-4370-01 9 100616467 100616467 C T FOXE1 Missense_Mutation p.R91C 0.24 deleterious(0) possibly_damaging(0.486) TCGA-BR-4370-01 9 102677556 102677556 G A STX17 Missense_Mutation p.R12H 0.22 deleterious(0) possibly_damaging(0.73) TCGA-BR-4370-01 9 107554238 107554238 G A ABCA1 Silent p.C1933C 0.09 TCGA-BR-4370-01 9 108382331 108382331 A - FKTN Frame_Shift_Del p.K389Nfs*17 0.16 TCGA-BR-4370-01 9 111617781 111617781 C T ACTL7B Missense_Mutation p.E144K 0.19 deleterious(0.01) possibly_damaging(0.61) TCGA-BR-4370-01 9 112705242 112705242 A G PALM2 Missense_Mutation p.D258G 0.21 tolerated(0.36) benign(0.338) TCGA-BR-4370-01 9 113088522 113088522 T C TXNDC8 Splice_Site p.X64_splice 0.20 TCGA-BR-4370-01 9 117849343 117849343 T G TNC Missense_Mutation p.S223R 0.16 tolerated(0.38) benign(0.109) TCGA-BR-4370-01 9 119115183 119115183 G A PAPPA Missense_Mutation p.R1388Q 0.23 tolerated(0.38) possibly_damaging(0.553) TCGA-BR-4370-01 9 119582954 119582954 G A ASTN2 Nonsense_Mutation p.Q666* 0.16 TCGA-BR-4370-01 9 123290085 123290085 T - CDK5RAP2 Frame_Shift_Del p.K333Rfs*76 0.21 TCGA-BR-4370-01 9 123725021 123725021 G A C5 Missense_Mutation p.R1478W 0.18 deleterious(0) probably_damaging(0.993) TCGA-BR-4370-01 9 128725316 128725316 A G PBX3 Missense_Mutation p.N383S 0.26 tolerated(1) benign(0) TCGA-BR-4370-01 9 130442513 130442513 C T STXBP1 Silent p.T513T 0.18 TCGA-BR-4370-01 9 131221884 131221884 C T ODF2 Missense_Mutation p.T24M 0.21 deleterious_low_confidence(0.03) benign(0.441) TCGA-BR-4370-01 9 131346661 131346661 G A SPTAN1 Missense_Mutation p.R765H 0.16 deleterious(0.03) probably_damaging(0.996) TCGA-BR-4370-01 9 13221386 13221386 T C MPDZ Silent p.G287G 0.21 TCGA-BR-4370-01 9 133577549 133577549 C T EXOSC2 Missense_Mutation p.S175F 0.19 tolerated(0.11) benign(0.105) TCGA-BR-4370-01 9 133780645 133780645 C T FIBCD1 Missense_Mutation p.V368M 0.14 deleterious(0) possibly_damaging(0.887) TCGA-BR-4370-01 9 133799212 133799212 G A FIBCD1 Silent p.G256G 0.22 TCGA-BR-4370-01 9 135470139 135470139 G A DDX31 3'UTR 0.19 TCGA-BR-4370-01 9 135554691 135554691 A - GTF3C4 Frame_Shift_Del p.K564Rfs*18 0.18 TCGA-BR-4370-01 9 136385331 136385331 T C TMEM8C Missense_Mutation p.Y72C 0.17 deleterious(0.01) probably_damaging(0.935) TCGA-BR-4370-01 9 136629170 136629170 C T VAV2 3'UTR 0.28 TCGA-BR-4370-01 9 137630637 137630637 G - COL5A1 Frame_Shift_Del p.D494Tfs*64 0.18 TCGA-BR-4370-01 9 137998700 137998700 G A OLFM1 Missense_Mutation p.R243Q 0.19 tolerated(0.1) benign(0.015) TCGA-BR-4370-01 9 139258818 139258818 C T CARD9 Missense_Mutation p.R516Q 0.29 tolerated(0.21) benign(0.004) TCGA-BR-4370-01 9 139266495 139266495 G A CARD9 Silent p.S12S 0.17 TCGA-BR-4370-01 9 139276353 139276353 G A SNAPC4 Missense_Mutation p.A747V 0.18 deleterious(0) probably_damaging(0.998) TCGA-BR-4370-01 9 140477041 140477041 C T ZMYND19 Missense_Mutation p.R213Q 0.13 tolerated(0.11) benign(0.008) TCGA-BR-4370-01 9 140638449 140638449 C T EHMT1 Silent p.D359D 0.17 TCGA-BR-4370-01 9 18795510 18795510 G A ADAMTSL1 Missense_Mutation p.V1265I 0.15 tolerated(0.09) benign(0.02) TCGA-BR-4370-01 9 19119813 19119813 T - PLIN2 Frame_Shift_Del p.V205Lfs*55 0.17 TCGA-BR-4370-01 9 21216571 21216571 G A IFNA16 3'UTR 0.32 TCGA-BR-4370-01 9 2650419 2650419 A G VLDLR Silent p.L718L 0.15 TCGA-BR-4370-01 9 3248099 3248100 AT - RFX3 Frame_Shift_Del p.M634Vfs*25 0.15 TCGA-BR-4370-01 9 33675379 33675379 C A PTENP1 RNA 0.21 TCGA-BR-4370-01 9 33675400 33675400 G A PTENP1 RNA 0.13 TCGA-BR-4370-01 9 35400423 35400423 G A UNC13B Missense_Mutation p.R1407H 0.21 deleterious(0.04) benign(0.238) TCGA-BR-4370-01 9 35674217 35674217 G T CA9 Missense_Mutation p.E87D 0.17 deleterious_low_confidence(0.04) benign(0.217) TCGA-BR-4370-01 9 37349416 37349416 C T ZCCHC7 Silent p.C350C 0.16 TCGA-BR-4370-01 9 5765468 5765468 G A KIAA1432 Missense_Mutation p.A966T 0.04 tolerated(0.05) probably_damaging(0.992) TCGA-BR-4370-01 9 6498129 6498129 C T UHRF2 Missense_Mutation p.R627W 0.23 deleterious(0) probably_damaging(0.991) TCGA-BR-4370-01 9 70993145 70993145 A G PGM5 Missense_Mutation p.I98V 0.03 deleterious(0.01) possibly_damaging(0.573) TCGA-BR-4370-01 9 71831355 71831355 G A TJP2 Missense_Mutation p.G103D 0.10 deleterious(0.01) probably_damaging(0.959) TCGA-BR-4370-01 9 72131853 72131853 C T APBA1 Missense_Mutation p.A92T 0.17 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-BR-4370-01 9 742244 742244 C T KANK1 Missense_Mutation p.R1246W 0.12 deleterious(0) probably_damaging(0.979) TCGA-BR-4370-01 9 74319544 74319544 C T TMEM2 Missense_Mutation p.R1054Q 0.12 tolerated(0.31) benign(0.001) TCGA-BR-4370-01 9 75533736 75533736 A G ALDH1A1 Silent p.V250V 0.19 TCGA-BR-4370-01 9 77397640 77397640 G A TRPM6 Missense_Mutation p.P1017S 0.11 deleterious(0) probably_damaging(1) TCGA-BR-4370-01 9 77416834 77416834 T G TRPM6 Missense_Mutation p.E663D 0.18 tolerated(0.1) benign(0.071) TCGA-BR-4370-01 9 78506228 78506228 C A PCSK5 Missense_Mutation p.A44D 0.14 tolerated(0.09) benign(0.424) TCGA-BR-4370-01 9 79322909 79322909 T G PRUNE2 Missense_Mutation p.K1427N 0.13 tolerated(0.46) benign(0.01) TCGA-BR-4370-01 9 79954754 79954754 G A VPS13A Missense_Mutation p.R2234Q 0.18 tolerated(0.11) probably_damaging(1) TCGA-BR-4370-01 9 84547721 84547721 G T RP11-383M4.6 Intron 0.22 TCGA-BR-4370-01 9 8504278 8504278 G A PTPRD Missense_Mutation p.A602V 0.17 tolerated(1) probably_damaging(0.989) TCGA-BR-4370-01 9 86584306 86584307 - A HNRNPK 3'UTR 0.19 TCGA-BR-4370-01 9 89561072 89561072 T C GAS1 Missense_Mutation p.E208G 0.21 tolerated(0.08) benign(0.297) TCGA-BR-4370-01 9 98229519 98229519 C T PTCH1 Silent p.P813P 0.19 TCGA-BR-4370-01 X 101818283 101818284 - T NXF4 RNA 0.13 TCGA-BR-4370-01 X 101912464 101912464 C T GPRASP1 Missense_Mutation p.P1208L 0.17 deleterious(0) probably_damaging(0.991) TCGA-BR-4370-01 X 102192592 102192593 - C RAB40AL Frame_Shift_Ins p.G118Wfs*4 0.14 TCGA-BR-4370-01 X 103031929 103031929 T C PLP1 Splice_Site p.X2_splice 0.11 TCGA-BR-4370-01 X 106888486 106888486 C T PRPS1 Missense_Mutation p.R204C 0.16 tolerated(0.08) benign(0.012) TCGA-BR-4370-01 X 107978366 107978366 G A IRS4 Silent p.S403S 0.22 TCGA-BR-4370-01 X 109697463 109697463 G T RGAG1 Missense_Mutation p.E1206D 0.19 deleterious_low_confidence(0.01) probably_damaging(0.913) TCGA-BR-4370-01 X 112054602 112054602 C T AMOT Missense_Mutation p.R471H 0.23 unknown(0) TCGA-BR-4370-01 X 118602438 118602438 G A SLC25A5 5'UTR 0.27 TCGA-BR-4370-01 X 123164817 123164817 A - STAG2 Frame_Shift_Del p.G46Afs*25 0.21 TCGA-BR-4370-01 X 123518248 123518248 C T TENM1 Missense_Mutation p.R2178H 0.16 deleterious(0) probably_damaging(0.943) TCGA-BR-4370-01 X 123556221 123556221 G A TENM1 Missense_Mutation p.R1458C 0.18 deleterious(0) probably_damaging(0.993) TCGA-BR-4370-01 X 130215725 130215725 T - ARHGAP36 Frame_Shift_Del p.L31* 0.24 TCGA-BR-4370-01 X 134681154 134681155 - A DDX26B Frame_Shift_Ins p.T238Nfs*30 0.20 TCGA-BR-4370-01 X 135314317 135314317 C T MAP7D3 Missense_Mutation p.D267N 0.19 deleterious(0.01) probably_damaging(0.923) TCGA-BR-4370-01 X 135961490 135961490 G A RBMX Nonsense_Mutation p.R33* 0.16 TCGA-BR-4370-01 X 136649750 136649750 G T ZIC3 Missense_Mutation p.E300D 0.13 tolerated(0.08) benign(0) TCGA-BR-4370-01 X 136651058 136651058 C T ZIC3 Intron 0.18 TCGA-BR-4370-01 X 139586578 139586578 C T SOX3 Silent p.T216T 0.17 TCGA-BR-4370-01 X 140271215 140271215 G A LDOC1 5'UTR 0.19 TCGA-BR-4370-01 X 14891584 14891584 A C MOSPD2 5'UTR 0.25 TCGA-BR-4370-01 X 150348463 150348463 C T GPR50 Silent p.Y136Y 0.18 TCGA-BR-4370-01 X 151130987 151130987 A - GABRE Frame_Shift_Del p.F157Lfs*33 0.23 TCGA-BR-4370-01 X 153001646 153001646 G A ABCD1 Missense_Mutation p.A388T 0.13 tolerated(0.18) benign(0.299) TCGA-BR-4370-01 X 153063827 153063827 C T SSR4 Missense_Mutation p.A154V 0.19 tolerated(0.17) benign(0.221) TCGA-BR-4370-01 X 153130652 153130652 G A L1CAM Silent p.P921P 0.15 TCGA-BR-4370-01 X 153132296 153132296 G - L1CAM Frame_Shift_Del p.Q747Rfs*104 0.30 TCGA-BR-4370-01 X 153590824 153590824 C - FLNA Frame_Shift_Del p.A843Lfs*33 0.30 TCGA-BR-4370-01 X 153689697 153689697 C T PLXNA3 Missense_Mutation p.R285C 0.17 deleterious(0.03) possibly_damaging(0.638) TCGA-BR-4370-01 X 21545078 21545078 C T CNKSR2 Missense_Mutation p.L351F 0.21 deleterious(0.04) possibly_damaging(0.817) TCGA-BR-4370-01 X 21581353 21581353 T C CNKSR2 Intron 0.21 TCGA-BR-4370-01 X 221753 221753 G T GTPBP6 Silent p.L284L 0.13 TCGA-BR-4370-01 X 2406919 2406919 C T ZBED1 Silent p.T614T 0.18 TCGA-BR-4370-01 X 24086182 24086182 G A EIF2S3 Silent p.A323A 0.22 TCGA-BR-4370-01 X 2873550 2873550 C T ARSE Missense_Mutation p.D72N 0.14 tolerated(0.05) benign(0.405) TCGA-BR-4370-01 X 30236810 30236810 C A MAGEB2 Missense_Mutation p.A38D 0.30 deleterious(0.04) benign(0.334) TCGA-BR-4370-01 X 3248157 3248157 C T MXRA5 Missense_Mutation p.R204Q 0.21 tolerated(1) benign(0) TCGA-BR-4370-01 X 3261860 3261860 C T MXRA5 Silent p.A5A 0.14 TCGA-BR-4370-01 X 35984679 35984679 T A CXorf22 Intron 0.18 TCGA-BR-4370-01 X 37545411 37545411 G A XK Missense_Mutation p.R66H 0.12 deleterious(0) probably_damaging(0.964) TCGA-BR-4370-01 X 38540530 38540530 G A TSPAN7 Missense_Mutation p.A224T 0.21 tolerated(0.09) possibly_damaging(0.84) TCGA-BR-4370-01 X 40465111 40465111 A - ATP6AP2 3'UTR 0.45 TCGA-BR-4370-01 X 41055854 41055855 AG - USP9X Frame_Shift_Del p.R1368Sfs*2 0.12 TCGA-BR-4370-01 X 44703614 44703614 C T DUSP21 Missense_Mutation p.S79L 0.18 deleterious(0.04) benign(0.167) TCGA-BR-4370-01 X 47045497 47045501 AGAGA - RBM10 Frame_Shift_Del p.R822Kfs*36 0.26 TCGA-BR-4370-01 X 47061595 47061595 C T UBA1 Silent p.S284S 0.18 TCGA-BR-4370-01 X 47272407 47272407 G A ZNF157 Missense_Mutation p.R312H 0.22 tolerated(0.54) benign(0.013) TCGA-BR-4370-01 X 47498644 47498644 G - ELK1 Frame_Shift_Del p.Q102Sfs*120 0.12 TCGA-BR-4370-01 X 47979522 47979522 G A SSX6 RNA 0.28 TCGA-BR-4370-01 X 51149851 51149851 G - CXorf67 5'UTR 0.12 TCGA-BR-4370-01 X 53105734 53105735 - C GPR173 5'UTR 0.28 TCGA-BR-4370-01 X 53231066 53231066 G A KDM5C Silent p.A612A 0.19 TCGA-BR-4370-01 X 53436052 53436052 G A SMC1A Missense_Mutation p.R496C 0.24 deleterious(0.02) probably_damaging(0.998) TCGA-BR-4370-01 X 54496509 54496509 C T FGD1 Silent p.E347E 0.11 TCGA-BR-4370-01 X 55287013 55287013 C A PAGE3 Missense_Mutation p.K91N 0.12 deleterious(0.02) benign(0.037) TCGA-BR-4370-01 X 62893977 62893977 G A ARHGEF9 Nonsense_Mutation p.R289* 0.14 TCGA-BR-4370-01 X 65483525 65483525 A - HEPH Frame_Shift_Del p.A1136Qfs*12 0.17 TCGA-BR-4370-01 X 68382265 68382265 T - PJA1 Frame_Shift_Del p.I273Ffs*61 0.14 TCGA-BR-4370-01 X 70683799 70683799 C T TAF1 Missense_Mutation p.P1862L 0.17 deleterious_low_confidence(0) probably_damaging(1) TCGA-BR-4370-01 X 71349939 71349939 G - RGAG4 Frame_Shift_Del p.T485Qfs*16 0.25 TCGA-BR-4370-01 X 71350736 71350736 G A RGAG4 Missense_Mutation p.R219C 0.16 tolerated(0.15) probably_damaging(0.987) TCGA-BR-4370-01 X 79951476 79951476 G A BRWD3 Missense_Mutation p.P1028S 0.13 deleterious(0) probably_damaging(0.984) TCGA-BR-4370-01 X 84502483 84502484 - T ZNF711 Intron 0.15 TCGA-BR-4370-01 X 84526788 84526788 A - ZNF711 Frame_Shift_Del p.N749Ifs*5 0.14 TCGA-BR-4370-01 X 9864477 9864477 G T SHROOM2 Silent p.S843S 0.19 TCGA-BR-4371-01 10 101464232 101464232 G A ENTPD7 Missense_Mutation p.R536Q 0.13 tolerated(0.11) benign(0.179) TCGA-BR-4371-01 10 103912095 103912095 C T NOLC1 5'UTR 0.52 TCGA-BR-4371-01 10 114059304 114059304 G A TECTB Missense_Mutation p.V297M 0.19 tolerated(0.09) benign(0.002) TCGA-BR-4371-01 10 114200363 114200363 C G ZDHHC6 Missense_Mutation p.A204P 0.29 deleterious(0.03) possibly_damaging(0.474) TCGA-BR-4371-01 10 126490374 126490374 G C FAM175B 5'UTR 0.37 TCGA-BR-4371-01 10 16911646 16911646 C T CUBN Missense_Mutation p.R3148Q 0.12 tolerated(0.26) benign(0.003) TCGA-BR-4371-01 10 50953852 50953852 C T OGDHL Missense_Mutation p.V490M 0.17 deleterious(0) probably_damaging(0.964) TCGA-BR-4371-01 10 96066442 96066442 C T PLCE1 Nonsense_Mutation p.R1961* 0.31 TCGA-BR-4371-01 10 99330046 99330046 G T UBTD1 Silent p.P150P 0.08 TCGA-BR-4371-01 11 116631555 116631555 G A BUD13 Missense_Mutation p.R384W 0.45 deleterious(0.03) benign(0.005) TCGA-BR-4371-01 11 118764855 118764855 G A CXCR5 Missense_Mutation p.R201H 0.08 tolerated(0.22) benign(0.003) TCGA-BR-4371-01 11 11987447 11987447 G A DKK3 Missense_Mutation p.R247W 0.44 deleterious(0.01) possibly_damaging(0.855) TCGA-BR-4371-01 11 3733640 3733641 - A NUP98 Intron 0.47 TCGA-BR-4371-01 11 48171647 48171647 G T PTPRJ Splice_Site p.X1017_splice 0.44 TCGA-BR-4371-01 11 51411489 51411489 A C OR4A5 Missense_Mutation p.L303V 0.30 tolerated_low_confidence(0.49) benign(0.012) TCGA-BR-4371-01 11 51411502 51411502 G A OR4A5 Silent p.L298L 0.29 TCGA-BR-4371-01 11 55606944 55606944 C A OR5D16 Silent p.V239V 0.13 TCGA-BR-4371-01 11 66029349 66029349 G A KLC2 Missense_Mutation p.R122H 0.27 tolerated(0.11) benign(0.018) TCGA-BR-4371-01 11 66333303 66333303 C T CTSF Silent p.Q321Q 0.41 TCGA-BR-4371-01 11 70279321 70279321 G A CTTN Missense_Mutation p.G424S 0.29 tolerated(0.12) benign(0.021) TCGA-BR-4371-01 11 71715113 71715113 G A NUMA1 Silent p.I2052I 0.40 TCGA-BR-4371-01 11 75379433 75379433 G A MAP6 5'UTR 0.39 TCGA-BR-4371-01 11 9829473 9829473 C T SBF2 Intron 0.27 TCGA-BR-4371-01 12 114837435 114837435 C T TBX5 Missense_Mutation p.R82Q 0.14 deleterious(0) probably_damaging(0.96) TCGA-BR-4371-01 12 124382427 124382427 C T DNAH10 Missense_Mutation p.R3013C 0.39 probably_damaging(0.999) TCGA-BR-4371-01 12 13215850 13215850 C A KIAA1467 Missense_Mutation p.P265T 0.39 deleterious(0.03) probably_damaging(1) TCGA-BR-4371-01 12 2912353 2912353 G A FKBP4 Missense_Mutation p.D437N 0.48 tolerated(0.06) possibly_damaging(0.588) TCGA-BR-4371-01 12 29665041 29665041 C T TMTC1 Missense_Mutation p.A815T 0.30 deleterious(0.01) possibly_damaging(0.839) TCGA-BR-4371-01 12 53775997 53775997 G A SP1 Missense_Mutation p.G89E 0.25 tolerated(0.06) probably_damaging(0.972) TCGA-BR-4371-01 12 56845179 56845179 C T MIP Missense_Mutation p.R226Q 0.43 tolerated(0.5) probably_damaging(0.997) TCGA-BR-4371-01 12 57487217 57487217 C T NAB2 Missense_Mutation p.P435L 0.33 deleterious_low_confidence(0.01) probably_damaging(0.913) TCGA-BR-4371-01 12 6436922 6436922 G C PLEKHG6 Missense_Mutation p.A725P 0.34 tolerated_low_confidence(1) benign(0) TCGA-BR-4371-01 12 69128509 69128509 G A NUP107 Missense_Mutation p.E762K 0.46 deleterious(0.04) benign(0.031) TCGA-BR-4371-01 12 70071027 70071027 C T BEST3 Missense_Mutation p.R216Q 0.38 tolerated(0.3) benign(0.046) TCGA-BR-4371-01 12 72667143 72667143 C T TRHDE Silent p.A195A 0.16 TCGA-BR-4371-01 13 111806228 111806228 C T ARHGEF7 Intron 0.39 TCGA-BR-4371-01 13 19997247 19997247 A C TPTE2 Missense_Mutation p.I508M 0.14 tolerated(0.06) benign(0.147) TCGA-BR-4371-01 13 29252312 29252312 C T POMP 3'UTR 0.22 TCGA-BR-4371-01 13 39262883 39262883 T G FREM2 Missense_Mutation p.L468V 0.17 deleterious(0.02) probably_damaging(0.934) TCGA-BR-4371-01 13 86369596 86369596 G A SLITRK6 Missense_Mutation p.R350C 0.09 deleterious(0) benign(0.016) TCGA-BR-4371-01 13 92797214 92797214 A C GPC5 Missense_Mutation p.E511D 0.14 tolerated(0.11) probably_damaging(0.997) TCGA-BR-4371-01 14 20249146 20249146 T C OR4M1 Missense_Mutation p.L222P 0.10 deleterious(0) probably_damaging(0.992) TCGA-BR-4371-01 14 23818627 23818627 C T SLC22A17 Missense_Mutation p.R127H 0.28 deleterious(0) probably_damaging(0.998) TCGA-BR-4371-01 14 24040633 24040633 G A JPH4 Missense_Mutation p.T436M 0.39 deleterious(0.04) probably_damaging(0.959) TCGA-BR-4371-01 14 36987176 36987176 G A NKX2-1 Silent p.G171G 0.35 TCGA-BR-4371-01 14 52781961 52781961 G A PTGER2 Missense_Mutation p.S232N 0.27 tolerated(0.39) benign(0.026) TCGA-BR-4371-01 14 58875881 58875881 G A TIMM9 Silent p.T47T 0.06 TCGA-BR-4371-01 14 76211878 76211878 G T TTLL5 Nonsense_Mutation p.G481* 0.28 TCGA-BR-4371-01 14 94674856 94674856 C T PPP4R4 Nonsense_Mutation p.R83* 0.44 TCGA-BR-4371-01 15 100692874 100692874 G A ADAMTS17 Silent p.A472A 0.20 TCGA-BR-4371-01 15 22368885 22368885 T G OR4M2 Missense_Mutation p.L104V 0.04 tolerated(0.26) benign(0.069) TCGA-BR-4371-01 15 23812297 23812297 G T MKRN3 Missense_Mutation p.M456I 0.26 tolerated(0.22) benign(0.006) TCGA-BR-4371-01 15 29346159 29346159 T A APBA2 Silent p.P24P 0.24 TCGA-BR-4371-01 15 33936554 33936554 G A RYR3 Missense_Mutation p.R1200H 0.29 probably_damaging(1) TCGA-BR-4371-01 15 54592538 54592538 G A UNC13C Missense_Mutation p.R1412H 0.29 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-BR-4371-01 15 60297453 60297453 C T FOXB1 Silent p.F97F 0.31 TCGA-BR-4371-01 15 74836809 74836809 C T ARID3B Silent p.L178L 0.20 TCGA-BR-4371-01 15 83440851 83440851 T G FSD2 Missense_Mutation p.D414A 0.33 tolerated(0.1) possibly_damaging(0.7) TCGA-BR-4371-01 15 83735774 83735774 G C BTBD1 Missense_Mutation p.P44A 0.17 tolerated(0.08) benign(0.022) TCGA-BR-4371-01 16 30208650 30208652 AAG - SLX1A In_Frame_Del p.E258del 0.24 TCGA-BR-4371-01 16 33647321 33647321 G A RP11-812E19.9 Silent p.N93N 0.20 TCGA-BR-4371-01 16 8949149 8949149 C T CARHSP1 Missense_Mutation p.E106K 0.27 deleterious(0.03) possibly_damaging(0.749) TCGA-BR-4371-01 17 11687773 11687773 C T DNAH9 Nonsense_Mutation p.Q2660* 0.23 TCGA-BR-4371-01 17 17797056 17797056 G A TOM1L2 Silent p.I95I 0.37 TCGA-BR-4371-01 17 27620876 27620876 C T NUFIP2 Missense_Mutation p.A68T 0.36 tolerated(0.48) possibly_damaging(0.763) TCGA-BR-4371-01 17 29533378 29533378 C T NF1 Nonsense_Mutation p.R461* 0.46 TCGA-BR-4371-01 17 29685544 29685544 C T NF1 Nonsense_Mutation p.Q2673* 0.36 TCGA-BR-4371-01 17 34923606 34923606 G A GGNBP2 Missense_Mutation p.R211Q 0.42 tolerated(0.18) benign(0.036) TCGA-BR-4371-01 17 34964453 34964453 A G MRM1 Silent p.A296A 0.25 TCGA-BR-4371-01 17 62081258 62081258 A G ICAM2 Missense_Mutation p.I132T 0.44 deleterious(0.04) possibly_damaging(0.749) TCGA-BR-4371-01 17 75209494 75209494 C T SEC14L1 Silent p.D654D 0.11 TCGA-BR-4371-01 18 43204733 43204733 C T SLC14A2 Missense_Mutation p.P35L 0.55 tolerated_low_confidence(0.09) benign(0.054) TCGA-BR-4371-01 18 45368211 45368211 G C SMAD2 Nonsense_Mutation p.S464* 0.23 TCGA-BR-4371-01 18 61232706 61232706 C T SERPINB12 Missense_Mutation p.T225M 0.61 tolerated(0.19) benign(0.009) TCGA-BR-4371-01 19 10226419 10226419 G A EIF3G Missense_Mutation p.P261S 0.28 deleterious(0.03) probably_damaging(0.934) TCGA-BR-4371-01 19 13323247 13323247 G A CACNA1A Missense_Mutation p.P2047L 0.52 possibly_damaging(0.859) TCGA-BR-4371-01 19 4048234 4048234 T G ZBTB7A Missense_Mutation p.K424T 0.39 deleterious(0) possibly_damaging(0.489) TCGA-BR-4371-01 19 40890034 40890034 C T HIPK4 Missense_Mutation p.G160R 0.18 deleterious(0) probably_damaging(1) TCGA-BR-4371-01 19 46095082 46095082 C T GPR4 Missense_Mutation p.V15M 0.17 deleterious(0.03) benign(0.003) TCGA-BR-4371-01 19 49547457 49547457 C G CGB5 5'UTR 0.35 TCGA-BR-4371-01 19 49939974 49939974 C T SLC17A7 Silent p.P49P 0.22 TCGA-BR-4371-01 19 52115642 52115642 C T SIGLEC5 Missense_Mutation p.G500R 0.16 tolerated(0.28) benign(0.009) TCGA-BR-4371-01 19 55098716 55098716 G A LILRA2 Missense_Mutation p.R452H 0.32 deleterious(0.03) benign(0.003) TCGA-BR-4371-01 19 56369488 56369488 C T NLRP4 Silent p.P243P 0.30 TCGA-BR-4371-01 19 829667 829667 C T AZU1 Silent p.Y107Y 0.37 TCGA-BR-4371-01 19 8654436 8654436 G A ADAMTS10 Missense_Mutation p.A645V 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-BR-4371-01 19 9068980 9068980 C T MUC16 Missense_Mutation p.A6156T 0.34 unknown(0) TCGA-BR-4371-01 19 9272049 9272049 C T ZNF317 Silent p.H576H 0.15 TCGA-BR-4371-01 1 10179613 10179613 C T UBE4B Missense_Mutation p.R461C 0.20 deleterious(0) benign(0.259) TCGA-BR-4371-01 1 110925531 110925531 G A SLC16A4 Nonsense_Mutation p.Q49* 0.18 TCGA-BR-4371-01 1 160143992 160143992 G A ATP1A4 Missense_Mutation p.V695M 0.14 deleterious(0) possibly_damaging(0.854) TCGA-BR-4371-01 1 175046955 175046955 G A TNN Missense_Mutation p.G134E 0.25 deleterious(0) benign(0.395) TCGA-BR-4371-01 1 176837961 176837961 G T ASTN1 Intron 0.37 TCGA-BR-4371-01 1 196642259 196642259 A C CFH Missense_Mutation p.E70D 0.04 deleterious(0.01) benign(0.433) TCGA-BR-4371-01 1 197890498 197890498 C T LHX9 Missense_Mutation p.R148C 0.16 deleterious(0.02) probably_damaging(0.969) TCGA-BR-4371-01 1 210761322 210761322 T C HHAT Missense_Mutation p.V376A 0.11 deleterious(0) probably_damaging(0.991) TCGA-BR-4371-01 1 218614600 218614600 G A TGFB2 Missense_Mutation p.V409M 0.25 deleterious(0) probably_damaging(0.999) TCGA-BR-4371-01 1 26888152 26888152 G C RPS6KA1 Missense_Mutation p.G539R 0.19 deleterious(0.02) possibly_damaging(0.709) TCGA-BR-4371-01 1 43296183 43296183 C T ERMAP Missense_Mutation p.R22W 0.37 deleterious_low_confidence(0) benign(0.153) TCGA-BR-4371-01 1 43317331 43317331 C T ZNF691 Silent p.S265S 0.23 TCGA-BR-4371-01 1 43778103 43778103 C T TIE1 Silent p.D586D 0.36 TCGA-BR-4371-01 1 48865100 48865100 G A SPATA6 Missense_Mutation p.R235W 0.26 deleterious(0) possibly_damaging(0.721) TCGA-BR-4371-01 1 67558906 67558906 C A C1orf141 Missense_Mutation p.V329L 0.34 deleterious(0.03) possibly_damaging(0.621) TCGA-BR-4371-01 1 99470147 99470147 C T LPPR5 Silent p.A27A 0.52 TCGA-BR-4371-01 20 17956474 17956474 G A MGME1 Missense_Mutation p.R220Q 0.17 tolerated(0.32) benign(0.028) TCGA-BR-4371-01 20 35555600 35555600 C T SAMHD1 Silent p.P227P 0.10 TCGA-BR-4371-01 20 47991216 47991216 C T KCNB1 Missense_Mutation p.R294H 0.23 deleterious(0) probably_damaging(1) TCGA-BR-4371-01 20 58467645 58467645 C T SYCP2 Silent p.S635S 0.08 TCGA-BR-4371-01 20 60887486 60887486 G A LAMA5 Silent p.G3110G 0.14 TCGA-BR-4371-01 20 61870941 61870941 G A BIRC7 Missense_Mutation p.R294H 0.17 deleterious(0.03) possibly_damaging(0.854) TCGA-BR-4371-01 20 62164956 62164956 G A PTK6 Silent p.F206F 0.24 TCGA-BR-4371-01 20 62193017 62193017 C T HELZ2 Missense_Mutation p.R2258H 0.08 deleterious(0.03) benign(0.004) TCGA-BR-4371-01 21 26972169 26972169 C T MRPL39 Missense_Mutation p.G177D 0.19 deleterious(0) probably_damaging(0.978) TCGA-BR-4371-01 21 32253626 32253626 C T KRTAP11-1 Missense_Mutation p.R73Q 0.44 tolerated(0.64) benign(0.005) TCGA-BR-4371-01 21 40559053 40559053 C T BRWD1 Missense_Mutation p.D2288N 0.43 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-BR-4371-01 21 46032554 46032554 C T KRTAP10-8 Silent p.V179V 0.02 TCGA-BR-4371-01 22 26706696 26706696 C T SEZ6L Silent p.T525T 0.38 TCGA-BR-4371-01 22 32479091 32479091 C T SLC5A1 Missense_Mutation p.T205I 0.21 deleterious(0.05) possibly_damaging(0.878) TCGA-BR-4371-01 22 32831745 32831745 C T BPIFC Silent p.A290A 0.24 TCGA-BR-4371-01 2 100170900 100170900 C T AFF3 Silent p.P1169P 0.18 TCGA-BR-4371-01 2 166245404 166245404 C T SCN2A Silent p.N1696N 0.11 TCGA-BR-4371-01 2 168102549 168102549 C A XIRP2 Silent p.G1549G 0.30 TCGA-BR-4371-01 2 169792824 169792824 G A ABCB11 Silent p.F910F 0.18 TCGA-BR-4371-01 2 170030521 170030521 C T LRP2 Missense_Mutation p.R3641Q 0.44 benign(0.044) TCGA-BR-4371-01 2 171850340 171850340 C T TLK1 Missense_Mutation p.G751R 0.20 deleterious_low_confidence(0) benign(0.439) TCGA-BR-4371-01 2 179471823 179471823 G A TTN Missense_Mutation p.R17836C 0.19 TCGA-BR-4371-01 2 189899824 189899824 G A COL5A2 Missense_Mutation p.R1391C 0.28 unknown(0) TCGA-BR-4371-01 2 222428898 222428898 A G EPHA4 Missense_Mutation p.Y126H 0.20 deleterious(0) probably_damaging(0.992) TCGA-BR-4371-01 2 25387531 25387531 G A POMC Silent p.L37L 0.06 TCGA-BR-4371-01 2 42720508 42720508 C T KCNG3 Missense_Mutation p.R45H 0.39 deleterious(0) possibly_damaging(0.602) TCGA-BR-4371-01 2 50850746 50850746 T C NRXN1 Silent p.E313E 0.30 TCGA-BR-4371-01 2 73151516 73151516 C T EMX1 Missense_Mutation p.S200L 0.20 deleterious(0) benign(0.128) TCGA-BR-4371-01 2 74701728 74701728 C T CCDC142 Missense_Mutation p.R726Q 0.48 tolerated(0.61) benign(0.162) TCGA-BR-4371-01 2 86849918 86849918 C T RNF103-CHMP3 Intron 0.12 TCGA-BR-4371-01 3 127779501 127779501 C T SEC61A1 Nonsense_Mutation p.R205* 0.29 TCGA-BR-4371-01 3 147128283 147128283 C T ZIC1 Silent p.F128F 0.17 TCGA-BR-4371-01 3 153220371 153220371 A - C3orf79 3'UTR 0.27 TCGA-BR-4371-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.24 deleterious(0.02) probably_damaging(0.959) TCGA-BR-4371-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.17 tolerated(0.11) possibly_damaging(0.529) TCGA-BR-4371-01 3 48339990 48339990 C T NME6 Missense_Mutation p.R14Q 0.08 tolerated(0.22) possibly_damaging(0.838) TCGA-BR-4371-01 3 48618351 48618351 C T COL7A1 Silent p.P1648P 0.31 TCGA-BR-4371-01 3 64132808 64132808 G A PRICKLE2 Missense_Mutation p.S453L 0.16 tolerated(0.24) benign(0.022) TCGA-BR-4371-01 3 95373850 95373850 T G MTHFD2P1 RNA 0.56 TCGA-BR-4371-01 3 97868558 97868558 C A OR5H14 Missense_Mutation p.T110K 0.35 deleterious(0) possibly_damaging(0.904) TCGA-BR-4371-01 4 111539829 111539829 G A PITX2 Missense_Mutation p.R143C 0.19 deleterious(0) probably_damaging(1) TCGA-BR-4371-01 4 134072207 134072207 G A PCDH10 Silent p.S304S 0.49 TCGA-BR-4371-01 4 138442509 138442509 C A PCDH18 Nonsense_Mutation p.E1028* 0.40 TCGA-BR-4371-01 4 141888924 141888924 T C RNF150 Silent p.G196G 0.22 TCGA-BR-4371-01 4 153247167 153247167 A C FBXW7 Nonsense_Mutation p.Y545* 0.40 TCGA-BR-4371-01 4 156135406 156135406 G A NPY2R Silent p.P105P 0.43 TCGA-BR-4371-01 4 57877199 57877199 A T POLR2B Missense_Mutation p.K578I 0.17 deleterious(0.01) benign(0.102) TCGA-BR-4371-01 4 9783809 9783809 C G DRD5 Missense_Mutation p.I52M 0.26 deleterious(0.02) benign(0.008) TCGA-BR-4371-01 5 140168105 140168105 G A PCDHA1 Missense_Mutation p.A744T 0.21 tolerated_low_confidence(0.08) benign(0.13) TCGA-BR-4371-01 5 140744135 140744135 C T PCDHGA5 Nonsense_Mutation p.R80* 0.15 TCGA-BR-4371-01 5 140754857 140754857 C T PCDHGA6 Nonsense_Mutation p.R403* 0.15 TCGA-BR-4371-01 5 149932953 149932953 T A NDST1 3'UTR 0.46 TCGA-BR-4371-01 5 156590250 156590250 G T FAM71B Missense_Mutation p.S342R 0.15 tolerated(0.06) benign(0.081) TCGA-BR-4371-01 5 169494638 169494638 T C DOCK2 Missense_Mutation p.L1531P 0.21 deleterious(0) probably_damaging(1) TCGA-BR-4371-01 5 169504824 169504824 C A DOCK2 Missense_Mutation p.S1659R 0.30 deleterious(0.03) benign(0) TCGA-BR-4371-01 5 173378844 173378844 G T CPEB4 Missense_Mutation p.W561C 0.41 deleterious(0) probably_damaging(0.996) TCGA-BR-4371-01 5 178359618 178359618 A G ZFP2 Missense_Mutation p.E435G 0.43 deleterious(0.01) probably_damaging(0.999) TCGA-BR-4371-01 5 179315209 179315209 C T TBC1D9B Missense_Mutation p.R383H 0.44 deleterious(0.02) probably_damaging(0.953) TCGA-BR-4371-01 5 33577248 33577248 A G ADAMTS12 Silent p.G961G 0.05 TCGA-BR-4371-01 5 36684095 36684095 G T SLC1A3 Missense_Mutation p.W473C 0.34 deleterious(0) probably_damaging(1) TCGA-BR-4371-01 5 45262221 45262221 C T HCN1 Silent p.T825T 0.28 TCGA-BR-4371-01 5 71493006 71493006 G A MAP1B Missense_Mutation p.R1275H 0.41 probably_damaging(0.991) TCGA-BR-4371-01 5 71756781 71756781 G A ZNF366 Silent p.H181H 0.17 TCGA-BR-4371-01 6 162394349 162394349 G A PARK2 Missense_Mutation p.T240M 0.08 deleterious(0) benign(0.38) TCGA-BR-4371-01 6 168927051 168927051 G C SMOC2 Missense_Mutation p.R94S 0.14 deleterious(0) possibly_damaging(0.714) TCGA-BR-4371-01 6 39512377 39512379 TTC - KIF6 In_Frame_Del p.E460del 0.17 TCGA-BR-4371-01 7 100172852 100172852 G A LRCH4 Missense_Mutation p.R644W 0.43 tolerated(0.11) benign(0.003) TCGA-BR-4371-01 7 103234860 103234860 C T RELN Missense_Mutation p.E1207K 0.54 tolerated(0.27) probably_damaging(0.989) TCGA-BR-4371-01 7 106545598 106545598 C T PIK3CG Silent p.N1025N 0.10 TCGA-BR-4371-01 7 136587920 136587920 C A CHRM2 Intron 0.28 TCGA-BR-4371-01 7 136699991 136699991 A G CHRM2 Missense_Mutation p.K127E 0.17 deleterious(0) probably_damaging(0.992) TCGA-BR-4371-01 7 142032478 142032478 C T TRBV7-1 Missense_Mutation p.R100C 0.11 deleterious(0.01) benign(0.021) TCGA-BR-4371-01 7 142378617 142378617 C A MTRNR2L6 3'Flank 0.36 TCGA-BR-4371-01 7 43351573 43351573 C T HECW1 Missense_Mutation p.T80M 0.56 deleterious(0) probably_damaging(0.999) TCGA-BR-4371-01 7 82584626 82584626 T C PCLO Silent p.Q1881Q 0.10 TCGA-BR-4371-01 7 98522858 98522858 G A TRRAP Missense_Mutation p.A983T 0.29 benign(0.001) TCGA-BR-4371-01 8 104955138 104955138 A G RIMS2 Silent p.P895P 0.10 TCGA-BR-4371-01 8 131129220 131129220 C T ASAP1 Silent p.T634T 0.13 TCGA-BR-4371-01 8 144126205 144126205 C T C8orf31 Missense_Mutation p.A109V 0.13 tolerated_low_confidence(0.29) possibly_damaging(0.695) TCGA-BR-4371-01 8 145557341 145557341 C T SCRT1 Missense_Mutation p.A185T 0.25 tolerated(0.55) unknown(0) TCGA-BR-4371-01 8 30699870 30699870 C A TEX15 Missense_Mutation p.D2222Y 0.15 deleterious(0) probably_damaging(1) TCGA-BR-4371-01 8 39080734 39080734 G A ADAM32 Missense_Mutation p.R501H 0.38 tolerated(0.24) benign(0.067) TCGA-BR-4371-01 8 55540977 55540977 A C RP1 Missense_Mutation p.K1512T 0.27 tolerated(0.39) benign(0.05) TCGA-BR-4371-01 8 61778367 61778367 G A CHD7 Missense_Mutation p.D2957N 0.34 probably_damaging(0.981) TCGA-BR-4371-01 8 69002885 69002885 A T PREX2 Nonsense_Mutation p.K729* 0.61 TCGA-BR-4371-01 8 72959382 72959382 C A TRPA1 Splice_Site p.X655_splice 0.12 TCGA-BR-4371-01 8 81553583 81553583 C T ZNF704 3'UTR 0.11 TCGA-BR-4371-01 8 81553607 81553607 G A ZNF704 Silent p.L411L 0.14 TCGA-BR-4371-01 8 99054331 99054331 A G RPL30 Intron 0.06 TCGA-BR-4371-01 9 101706323 101706323 G A COL15A1 5'UTR 0.19 TCGA-BR-4371-01 9 119858332 119858332 G A ASTN2 Missense_Mutation p.R372C 0.34 deleterious(0) unknown(0) TCGA-BR-4371-01 9 125797698 125797698 G A GPR21 Missense_Mutation p.A285T 0.04 tolerated(0.13) possibly_damaging(0.896) TCGA-BR-4371-01 9 133936523 133936523 C A LAMC3 Missense_Mutation p.P754T 0.36 deleterious(0) probably_damaging(0.968) TCGA-BR-4371-01 9 135978249 135978249 C T RALGDS Silent p.S610S 0.40 TCGA-BR-4371-01 9 137734065 137734065 C A COL5A1 Silent p.P1811P 0.16 TCGA-BR-4371-01 9 37422818 37422818 C T GRHPR Missense_Mutation p.A24V 0.45 tolerated(0.28) benign(0.002) TCGA-BR-4371-01 X 117748655 117748655 C T DOCK11 Missense_Mutation p.R1033C 0.28 deleterious(0) benign(0.023) TCGA-BR-4371-01 X 130419221 130419221 C T IGSF1 Missense_Mutation p.R200H 0.39 tolerated(0.48) benign(0.031) TCGA-BR-4371-01 X 18671592 18671592 G T CDKL5 Silent p.L1007L 0.16 TCGA-BR-4371-01 X 26212639 26212639 C T MAGEB6 Missense_Mutation p.R226C 0.57 tolerated(0.07) possibly_damaging(0.589) TCGA-BR-4371-01 X 47775487 47775487 C A ZNF81 Missense_Mutation p.S481Y 0.24 deleterious(0.03) probably_damaging(0.999) TCGA-BR-4371-01 X 53171977 53171977 G A LINC01155 RNA 0.16 TCGA-BR-4371-01 X 85119570 85119570 T C CHM 3'UTR 0.17 TCGA-BR-6452-01 10 100143449 100143449 T C PYROXD2 3'UTR 0.10 TCGA-BR-6452-01 10 100157113 100157113 A G PYROXD2 Missense_Mutation p.L205P 0.15 deleterious(0) possibly_damaging(0.873) TCGA-BR-6452-01 10 100401612 100401612 T - HPSE2 Frame_Shift_Del p.I364Ffs*20 0.08 TCGA-BR-6452-01 10 101462387 101462387 A G ENTPD7 Missense_Mutation p.T514A 0.17 deleterious(0.04) possibly_damaging(0.888) TCGA-BR-6452-01 10 101728939 101728939 T C DNMBP Silent p.G67G 0.11 TCGA-BR-6452-01 10 101835695 101835695 G T CPN1 Silent p.P131P 0.17 TCGA-BR-6452-01 10 103298049 103298050 - A BTRC Frame_Shift_Ins p.I528Nfs*2 0.10 TCGA-BR-6452-01 10 103344632 103344632 A G POLL Silent p.V206V 0.20 TCGA-BR-6452-01 10 103553732 103553732 G A MGEA5 Nonsense_Mutation p.Q670* 0.26 TCGA-BR-6452-01 10 103559054 103559054 T C MGEA5 Missense_Mutation p.T452A 0.05 tolerated(0.39) benign(0) TCGA-BR-6452-01 10 103908403 103908403 A G PPRC1 Silent p.S1523S 0.10 TCGA-BR-6452-01 10 103908641 103908641 G T PPRC1 Missense_Mutation p.R1562M 0.26 deleterious(0) possibly_damaging(0.803) TCGA-BR-6452-01 10 103918966 103918966 A G NOLC1 Silent p.K208K 0.06 TCGA-BR-6452-01 10 103988776 103988776 C - ELOVL3 Frame_Shift_Del p.K196Rfs*17 0.28 TCGA-BR-6452-01 10 104445597 104445597 T C ARL3 Silent p.S159S 0.12 TCGA-BR-6452-01 10 1044995 1044998 TGTT - GTPBP4 Frame_Shift_Del p.F206Lfs*14 0.24 TCGA-BR-6452-01 10 104622686 104622686 A G C10orf32 3'UTR 0.18 TCGA-BR-6452-01 10 104679501 104679501 G A CNNM2 Missense_Mutation p.D422N 0.14 deleterious(0.03) possibly_damaging(0.824) TCGA-BR-6452-01 10 104836918 104836918 A G CNNM2 Missense_Mutation p.H870R 0.09 deleterious(0.02) benign(0.368) TCGA-BR-6452-01 10 105037837 105037837 A C INA Missense_Mutation p.K290T 0.13 deleterious(0) probably_damaging(0.982) TCGA-BR-6452-01 10 105203692 105203692 C T PDCD11 Silent p.N1715N 0.11 TCGA-BR-6452-01 10 105727500 105727500 A - SLK 5'UTR p.M1? 0.09 TCGA-BR-6452-01 10 105761204 105761204 T C SLK Silent p.H289H 0.18 TCGA-BR-6452-01 10 105815736 105815736 C T COL17A1 Silent p.A497A 0.10 TCGA-BR-6452-01 10 105817937 105817937 T A COL17A1 Missense_Mutation p.T412S 0.11 unknown(0) TCGA-BR-6452-01 10 105920858 105920858 T C WDR96 Silent p.K1159K 0.09 TCGA-BR-6452-01 10 106602578 106602578 A G SORCS3 Missense_Mutation p.D219G 0.13 deleterious(0.03) possibly_damaging(0.698) TCGA-BR-6452-01 10 111642211 111642211 A G XPNPEP1 Silent p.A340A 0.19 TCGA-BR-6452-01 10 111876060 111876060 T A ADD3 Missense_Mutation p.D126E 0.08 tolerated(1) benign(0.001) TCGA-BR-6452-01 10 111879279 111879279 C T ADD3 Missense_Mutation p.A306V 0.09 deleterious(0) probably_damaging(0.936) TCGA-BR-6452-01 10 112053968 112053968 T G SMNDC1 Missense_Mutation p.K219N 0.06 deleterious(0.01) probably_damaging(0.986) TCGA-BR-6452-01 10 112266745 112266745 C T DUSP5 Missense_Mutation p.A194V 0.08 deleterious(0) probably_damaging(0.996) TCGA-BR-6452-01 10 112349459 112349459 G T SMC3 Nonsense_Mutation p.E468* 0.29 TCGA-BR-6452-01 10 112357915 112357915 A G SMC3 Missense_Mutation p.D712G 0.13 tolerated(0.06) possibly_damaging(0.561) TCGA-BR-6452-01 10 112769025 112769025 A T SHOC2 Missense_Mutation p.N435I 0.11 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 10 115348832 115348832 C - NRAP Frame_Shift_Del p.A1699Qfs*14 0.27 TCGA-BR-6452-01 10 115411615 115411615 C T NRAP Missense_Mutation p.V208M 0.13 tolerated(0.12) benign(0.234) TCGA-BR-6452-01 10 115602112 115602115 TTTC ATTCT DCLRE1A Frame_Shift_Ins p.K885Efs*8 0.16 TCGA-BR-6452-01 10 115639443 115639443 C A NHLRC2 Missense_Mutation p.L300I 0.10 tolerated(0.1) benign(0.291) TCGA-BR-6452-01 10 115662308 115662308 A - NHLRC2 Frame_Shift_Del p.R486Gfs*27 0.11 TCGA-BR-6452-01 10 115804281 115804281 C A ADRB1 Missense_Mutation p.F130L 0.11 tolerated(0.99) benign(0.005) TCGA-BR-6452-01 10 116046101 116046101 C T VWA2 Silent p.H467H 0.10 TCGA-BR-6452-01 10 116245123 116245123 C T ABLIM1 Intron 0.26 TCGA-BR-6452-01 10 116608429 116608429 A G FAM160B1 Missense_Mutation p.D579G 0.07 deleterious(0) benign(0.015) TCGA-BR-6452-01 10 117154195 117154195 A T ATRNL1 Missense_Mutation p.I1068F 0.13 tolerated(0.21) benign(0.096) TCGA-BR-6452-01 10 118187505 118187505 G T PNLIPRP3 5'UTR 0.11 TCGA-BR-6452-01 10 118368620 118368620 C T PNLIPRP1 Missense_Mutation p.P466S 0.08 tolerated(0.11) benign(0.054) TCGA-BR-6452-01 10 118380487 118380487 C T PNLIPRP2 5'UTR 0.14 TCGA-BR-6452-01 10 118394418 118394418 A G PNLIPRP2 Missense_Mutation p.N295S 0.08 tolerated(0.19) benign(0.009) TCGA-BR-6452-01 10 118439134 118439134 C T HSPA12A Missense_Mutation p.R389H 0.10 deleterious(0) probably_damaging(0.975) TCGA-BR-6452-01 10 118969029 118969029 T G KCNK18 Missense_Mutation p.V125G 0.05 deleterious(0) possibly_damaging(0.904) TCGA-BR-6452-01 10 119042898 119042898 T - PDZD8 Frame_Shift_Del p.I1116* 0.15 TCGA-BR-6452-01 10 12056070 12056070 A - UPF2 Frame_Shift_Del p.L420Wfs*55 0.09 TCGA-BR-6452-01 10 120810101 120810101 C T EIF3A Missense_Mutation p.R802H 0.06 deleterious(0) unknown(0) TCGA-BR-6452-01 10 120818859 120818859 A G EIF3A Silent p.N498N 0.09 TCGA-BR-6452-01 10 121571462 121571462 C - INPP5F Frame_Shift_Del p.P628Lfs*34 0.12 TCGA-BR-6452-01 10 121582627 121582627 C T INPP5F Nonsense_Mutation p.R693* 0.08 TCGA-BR-6452-01 10 123247527 123247527 T C FGFR2 Missense_Mutation p.D656G 0.10 deleterious(0) possibly_damaging(0.675) TCGA-BR-6452-01 10 123810012 123810012 A G TACC2 Missense_Mutation p.I31M 0.12 benign(0.005) TCGA-BR-6452-01 10 124249068 124249068 G A HTRA1 Missense_Mutation p.G235S 0.15 deleterious(0) probably_damaging(0.996) TCGA-BR-6452-01 10 124345846 124345846 G A DMBT1 Missense_Mutation p.G577D 0.21 deleterious(0.03) unknown(0) TCGA-BR-6452-01 10 124358514 124358514 C T DMBT1 Missense_Mutation p.R1061C 0.11 deleterious(0.03) unknown(0) TCGA-BR-6452-01 10 124396722 124396722 A G DMBT1 Missense_Mutation p.D2150G 0.16 deleterious(0.02) possibly_damaging(0.816) TCGA-BR-6452-01 10 124600721 124600722 - T CUZD1 Frame_Shift_Ins p.S69Kfs*12 0.19 TCGA-BR-6452-01 10 124712522 124712522 T C C10orf88 Missense_Mutation p.N64S 0.09 tolerated(1) benign(0.001) TCGA-BR-6452-01 10 124742347 124742347 C T PSTK Silent p.N105N 0.19 TCGA-BR-6452-01 10 124753312 124753312 T C IKZF5 Missense_Mutation p.Q415R 0.08 deleterious(0) benign(0.047) TCGA-BR-6452-01 10 124758027 124758027 C T IKZF5 Missense_Mutation p.A39T 0.09 tolerated(0.59) benign(0) TCGA-BR-6452-01 10 124897045 124897045 A T HMX3 Missense_Mutation p.E291V 0.10 deleterious(0) probably_damaging(0.984) TCGA-BR-6452-01 10 126683094 126683094 G A CTBP2 Missense_Mutation p.H782Y 0.24 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 10 126716040 126716040 C A CTBP2 Missense_Mutation p.A97S 0.22 deleterious_low_confidence(0.04) benign(0.418) TCGA-BR-6452-01 10 127422661 127422661 T A EDRF1 Missense_Mutation p.M469K 0.14 tolerated(0.27) benign(0.007) TCGA-BR-6452-01 10 127460903 127460903 A C MMP21 Missense_Mutation p.V288G 0.09 deleterious(0) probably_damaging(0.968) TCGA-BR-6452-01 10 127789653 127789653 G A ADAM12 Missense_Mutation p.A303V 0.12 deleterious(0.02) probably_damaging(0.985) TCGA-BR-6452-01 10 128797654 128797654 A T DOCK1 Missense_Mutation p.L268F 0.15 tolerated(0.31) possibly_damaging(0.587) TCGA-BR-6452-01 10 128974382 128974382 C T FAM196A Missense_Mutation p.R93H 0.12 deleterious(0) probably_damaging(0.998) TCGA-BR-6452-01 10 129691077 129691077 A - CLRN3 5'UTR 0.28 TCGA-BR-6452-01 10 129901497 129901497 C T MKI67 Silent p.T2869T 0.07 TCGA-BR-6452-01 10 129905845 129905845 G C MKI67 Missense_Mutation p.T1420R 0.20 deleterious(0.01) probably_damaging(0.951) TCGA-BR-6452-01 10 129907158 129907158 G A MKI67 Silent p.G982G 0.08 TCGA-BR-6452-01 10 131666125 131666125 C - EBF3 Frame_Shift_Del p.G269Vfs*6 0.22 TCGA-BR-6452-01 10 13178916 13178916 C T OPTN 3'UTR 0.11 TCGA-BR-6452-01 10 133955535 133955535 G A JAKMIP3 Missense_Mutation p.A529T 0.36 deleterious(0) probably_damaging(0.995) TCGA-BR-6452-01 10 134017367 134017367 C T DPYSL4 Silent p.S521S 0.07 TCGA-BR-6452-01 10 134755109 134755109 A G TTC40 Missense_Mutation p.S98P 0.07 deleterious(0) probably_damaging(0.995) TCGA-BR-6452-01 10 13481460 13481460 C T BEND7 Silent p.G373G 0.10 TCGA-BR-6452-01 10 134898389 134898389 G A GPR123 5'Flank 0.23 TCGA-BR-6452-01 10 135086342 135086342 A G ADAM8 Missense_Mutation p.V222A 0.12 deleterious(0) possibly_damaging(0.769) TCGA-BR-6452-01 10 14572484 14572484 T A FAM107B Missense_Mutation p.D167V 0.07 deleterious(0) probably_damaging(0.984) TCGA-BR-6452-01 10 15138584 15138585 - C C10orf111 Frame_Shift_Ins p.Q81Tfs*8 0.24 TCGA-BR-6452-01 10 15254795 15254795 G A FAM171A1 3'UTR 0.15 TCGA-BR-6452-01 10 15256309 15256309 G A FAM171A1 Silent p.S426S 0.14 TCGA-BR-6452-01 10 15883459 15883459 A G FAM188A Silent p.S125S 0.13 TCGA-BR-6452-01 10 16528542 16528542 A T PTER Silent p.A208A 0.09 TCGA-BR-6452-01 10 17113554 17113554 A - CUBN Frame_Shift_Del p.P833Lfs*67 0.25 TCGA-BR-6452-01 10 17171226 17171227 - CT CUBN Frame_Shift_Ins p.G49Efs*26 0.21 TCGA-BR-6452-01 10 17195517 17195517 G A TRDMT1 Missense_Mutation p.P355L 0.11 deleterious(0) probably_damaging(0.997) TCGA-BR-6452-01 10 17632336 17632336 A - PTPLA 3'UTR 0.10 TCGA-BR-6452-01 10 1779250 1779250 C T ADARB2 Missense_Mutation p.R32Q 0.28 tolerated_low_confidence(0.08) benign(0.073) TCGA-BR-6452-01 10 17865224 17865224 T G MRC1L1 Missense_Mutation p.F71L 0.11 benign(0.002) TCGA-BR-6452-01 10 17891615 17891615 T A MRC1L1 Missense_Mutation p.W366R 0.08 probably_damaging(1) TCGA-BR-6452-01 10 18789845 18789845 A G CACNB2 Silent p.E187E 0.10 TCGA-BR-6452-01 10 18825082 18825082 A G CACNB2 Missense_Mutation p.N420S 0.14 tolerated(0.1) benign(0.013) TCGA-BR-6452-01 10 18827115 18827115 T C CACNB2 Missense_Mutation p.F437L 0.09 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 10 18834947 18834947 G A NSUN6 Missense_Mutation p.A442V 0.06 tolerated(0.17) benign(0.007) TCGA-BR-6452-01 10 20357165 20357165 G - PLXDC2 Frame_Shift_Del 0.23 TCGA-BR-6452-01 10 22208825 22208825 T C DNAJC1 Missense_Mutation p.K191E 0.11 deleterious(0) probably_damaging(0.952) TCGA-BR-6452-01 10 24813641 24813641 T A KIAA1217 Missense_Mutation p.F949Y 0.17 deleterious(0.04) possibly_damaging(0.695) TCGA-BR-6452-01 10 24908746 24908746 G A ARHGAP21 Missense_Mutation p.A693V 0.09 tolerated(0.81) benign(0.001) TCGA-BR-6452-01 10 24909193 24909193 G T ARHGAP21 Missense_Mutation p.P544H 0.08 tolerated(0.1) benign(0.012) TCGA-BR-6452-01 10 27035443 27035443 G A PDSS1 3'UTR 0.32 TCGA-BR-6452-01 10 27324093 27324093 G A ANKRD26 Missense_Mutation p.R1096W 0.19 tolerated(0.19) possibly_damaging(0.72) TCGA-BR-6452-01 10 27337805 27337806 - CAT ANKRD26 In_Frame_Ins p.D579dup 0.21 TCGA-BR-6452-01 10 27409429 27409429 C A YME1L1 Missense_Mutation p.R506M 0.10 tolerated(0.16) benign(0.292) TCGA-BR-6452-01 10 27459272 27459272 A - MASTL Frame_Shift_Del p.T464Lfs*3 0.17 TCGA-BR-6452-01 10 27687763 27687763 A - PTCHD3 Frame_Shift_Del p.F588Lfs*18 0.21 TCGA-BR-6452-01 10 27688067 27688067 G A PTCHD3 Missense_Mutation p.A487V 0.12 deleterious(0) possibly_damaging(0.499) TCGA-BR-6452-01 10 28878772 28878772 G A WAC Nonsense_Mutation p.W163* 0.19 TCGA-BR-6452-01 10 28970330 28970330 G A BAMBI Missense_Mutation p.A74T 0.11 tolerated(0.25) benign(0.002) TCGA-BR-6452-01 10 294540 294540 C A ZMYND11 Missense_Mutation p.L498M 0.11 tolerated(0.16) benign(0.39) TCGA-BR-6452-01 10 29759284 29759284 T C SVIL Missense_Mutation p.I1922V 0.10 deleterious(0.02) benign(0.217) TCGA-BR-6452-01 10 29788121 29788121 C A SVIL Missense_Mutation p.E1196D 0.12 tolerated(0.26) benign(0.02) TCGA-BR-6452-01 10 29821634 29821634 G T SVIL Silent p.P554P 0.18 TCGA-BR-6452-01 10 30316580 30316580 T C KIAA1462 Missense_Mutation p.S833G 0.10 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 10 30749657 30749657 C T MAP3K8 Silent p.T432T 0.28 TCGA-BR-6452-01 10 31134156 31134156 T C ZNF438 Missense_Mutation p.M741V 0.07 tolerated(0.47) benign(0.001) TCGA-BR-6452-01 10 3151612 3151612 C T PFKP Silent p.C343C 0.32 TCGA-BR-6452-01 10 3200265 3200266 - T PITRM1 Frame_Shift_Ins p.S406Kfs*8 0.19 TCGA-BR-6452-01 10 32560682 32560682 T C EPC1 Silent p.T746T 0.07 TCGA-BR-6452-01 10 35456559 35456559 T - CREM Intron 0.20 TCGA-BR-6452-01 10 35929473 35929473 G A FZD8 Silent p.T295T 0.17 TCGA-BR-6452-01 10 38127040 38127040 C A ZNF248 Splice_Site p.X6_splice 0.08 TCGA-BR-6452-01 10 3822350 3822350 G A KLF6 Missense_Mutation p.H250Y 0.16 deleterious(0) probably_damaging(0.968) TCGA-BR-6452-01 10 38406967 38406967 A - ZNF37A Frame_Shift_Del p.K297Nfs*134 0.13 TCGA-BR-6452-01 10 43089341 43089341 C T ZNF33B Missense_Mutation p.G353R 0.09 tolerated(0.13) probably_damaging(1) TCGA-BR-6452-01 10 43132401 43132401 A G ZNF33B 5'UTR 0.10 TCGA-BR-6452-01 10 43280948 43280948 A - BMS1 Frame_Shift_Del p.K67Sfs*12 0.18 TCGA-BR-6452-01 10 43325851 43325851 G A BMS1 Missense_Mutation p.R1200H 0.11 deleterious(0.04) benign(0.181) TCGA-BR-6452-01 10 43869163 43869163 T C FXYD4 5'UTR 0.23 TCGA-BR-6452-01 10 44139744 44139744 A T ZNF32 Missense_Mutation p.D192E 0.08 tolerated(0.22) benign(0.103) TCGA-BR-6452-01 10 44139814 44139814 C G ZNF32 Missense_Mutation p.S169T 0.09 tolerated(0.45) benign(0.032) TCGA-BR-6452-01 10 45480371 45480371 A G RASSF4 Missense_Mutation p.I162V 0.06 tolerated(0.39) benign(0.001) TCGA-BR-6452-01 10 45480399 45480399 G A RASSF4 Missense_Mutation p.G171D 0.16 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 10 45652429 45652429 A T RP11-445N18.7 RNA 0.10 TCGA-BR-6452-01 10 45941070 45941072 AAG - ALOX5 In_Frame_Del p.K656del 0.20 TCGA-BR-6452-01 10 46121968 46121968 A T ZFAND4 Missense_Mutation p.L435M 0.07 tolerated(0.06) benign(0.073) TCGA-BR-6452-01 10 468784 468784 A G DIP2C Missense_Mutation p.V195A 0.11 tolerated(0.21) benign(0) TCGA-BR-6452-01 10 48389189 48389189 T C RBP3 Silent p.T563T 0.09 TCGA-BR-6452-01 10 48413794 48413794 G A GDF2 Silent p.G358G 0.20 TCGA-BR-6452-01 10 49448436 49448436 C T FRMPD2 Missense_Mutation p.A223T 0.09 tolerated(0.44) benign(0.027) TCGA-BR-6452-01 10 49654565 49654565 G A ARHGAP22 Silent p.L672L 0.23 TCGA-BR-6452-01 10 50227737 50227737 G A VSTM4 Silent p.S307S 0.15 TCGA-BR-6452-01 10 50736484 50736484 C T ERCC6-PGBD3 Missense_Mutation p.A211T 0.21 deleterious_low_confidence(0.05) probably_damaging(0.922) TCGA-BR-6452-01 10 50833609 50833609 G A CHAT Silent p.R281R 0.28 TCGA-BR-6452-01 10 51465221 51465221 A G AGAP7 Missense_Mutation p.V412A 0.05 deleterious(0) probably_damaging(0.99) TCGA-BR-6452-01 10 51769756 51769756 G A AGAP6 Missense_Mutation p.G624D 0.09 tolerated(0.08) probably_damaging(0.969) TCGA-BR-6452-01 10 52071042 52071042 G A SGMS1 Missense_Mutation p.T292I 0.15 tolerated(0.1) possibly_damaging(0.457) TCGA-BR-6452-01 10 52610496 52610496 T C A1CF Missense_Mutation p.T18A 0.07 tolerated(0.64) benign(0) TCGA-BR-6452-01 10 52834553 52834553 T C PRKG1 Missense_Mutation p.L68S 0.18 tolerated(0.63) benign(0.007) TCGA-BR-6452-01 10 54530479 54530479 A G MBL2 Silent p.S85S 0.22 TCGA-BR-6452-01 10 5541029 5541029 C T CALML5 Missense_Mutation p.E125K 0.41 deleterious(0.01) benign(0.361) TCGA-BR-6452-01 10 55566537 55566537 A G PCDH15 Silent p.P1616P 0.10 TCGA-BR-6452-01 10 5798695 5798695 G A FAM208B Silent p.L2242L 0.13 TCGA-BR-6452-01 10 58117901 58117901 C T ZWINT 3'UTR 0.11 TCGA-BR-6452-01 10 58119836 58119836 G T ZWINT Missense_Mutation p.L67M 0.14 deleterious(0.03) probably_damaging(0.996) TCGA-BR-6452-01 10 60562892 60562892 G A BICC1 Missense_Mutation p.A691T 0.25 tolerated(0.35) benign(0.04) TCGA-BR-6452-01 10 61828702 61828702 G A ANK3 Silent p.S3979S 0.12 TCGA-BR-6452-01 10 61834285 61834285 G A ANK3 Silent p.H2118H 0.23 TCGA-BR-6452-01 10 62652726 62652726 C A RHOBTB1 Silent p.S108S 0.28 TCGA-BR-6452-01 10 63188896 63188896 A G TMEM26 Silent p.V131V 0.10 TCGA-BR-6452-01 10 64415333 64415333 G A ZNF365 Intron 0.10 TCGA-BR-6452-01 10 64937580 64937580 T C JMJD1C Missense_Mutation p.D2374G 0.16 deleterious(0.01) possibly_damaging(0.653) TCGA-BR-6452-01 10 67680052 67680052 T - CTNNA3 3'UTR 0.28 TCGA-BR-6452-01 10 68686693 68686693 A G LRRTM3 Missense_Mutation p.R7G 0.10 tolerated(0.21) benign(0.165) TCGA-BR-6452-01 10 68686785 68686785 C T LRRTM3 Silent p.G37G 0.29 TCGA-BR-6452-01 10 68979622 68979622 T C CTNNA3 Missense_Mutation p.K196E 0.09 deleterious(0.01) benign(0.1) TCGA-BR-6452-01 10 69583091 69583091 A G DNAJC12 Silent p.H46H 0.06 TCGA-BR-6452-01 10 69948775 69948775 G A MYPN Silent p.T939T 0.15 TCGA-BR-6452-01 10 69961687 69961687 C - MYPN Frame_Shift_Del p.P1200Hfs*115 0.16 TCGA-BR-6452-01 10 70056653 70056653 G A PBLD Silent p.N58N 0.07 TCGA-BR-6452-01 10 70138421 70138421 G A RUFY2 Intron 0.09 TCGA-BR-6452-01 10 70204764 70204764 T C DNA2 Silent p.T464T 0.09 TCGA-BR-6452-01 10 70231681 70231681 G A DNA2 Silent p.L67L 0.12 TCGA-BR-6452-01 10 70404504 70404504 A T TET1 Missense_Mutation p.D673V 0.11 deleterious(0) possibly_damaging(0.467) TCGA-BR-6452-01 10 70551054 70551054 T C CCAR1 3'UTR 0.10 TCGA-BR-6452-01 10 70645238 70645238 A G STOX1 Silent p.E562E 0.08 TCGA-BR-6452-01 10 71912223 71912223 G A SAR1A 3'UTR 0.13 TCGA-BR-6452-01 10 72297649 72297649 A G PALD1 Missense_Mutation p.Y437C 0.11 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 10 73082559 73082559 C A SLC29A3 Silent p.T16T 0.12 TCGA-BR-6452-01 10 73326655 73326655 G A CDH23 Missense_Mutation p.E196K 0.16 deleterious(0) probably_damaging(0.996) TCGA-BR-6452-01 10 73537513 73537513 T C C10orf54 5'Flank 0.11 TCGA-BR-6452-01 10 7409612 7409612 G A SFMBT2 Silent p.D145D 0.33 TCGA-BR-6452-01 10 74692183 74692183 C T OIT3 Silent p.C513C 0.09 TCGA-BR-6452-01 10 75185715 75185715 C T MSS51 Missense_Mutation p.G308D 0.13 tolerated(0.09) benign(0.003) TCGA-BR-6452-01 10 75231343 75231343 A G PPP3CB Silent p.Y184Y 0.10 TCGA-BR-6452-01 10 75331241 75331241 T C USP54 Missense_Mutation p.S60G 0.07 deleterious(0) probably_damaging(0.994) TCGA-BR-6452-01 10 75560464 75560464 C - ZSWIM8 Frame_Shift_Del p.Y1701Tfs*17 0.31 TCGA-BR-6452-01 10 75576871 75576871 T C CAMK2G Missense_Mutation p.I450V 0.07 tolerated_low_confidence(0.07) benign(0.138) TCGA-BR-6452-01 10 75868743 75868743 T C VCL Silent p.L858L 0.10 TCGA-BR-6452-01 10 7608186 7608186 A G ITIH5 Silent p.S778S 0.12 TCGA-BR-6452-01 10 76735770 76735770 A - KAT6B Frame_Shift_Del p.K560Rfs*73 0.22 TCGA-BR-6452-01 10 7679259 7679259 G A ITIH5 Missense_Mutation p.A195V 0.11 deleterious(0) benign(0.378) TCGA-BR-6452-01 10 7820934 7820934 A G KIN Missense_Mutation p.I142T 0.10 deleterious(0) probably_damaging(0.95) TCGA-BR-6452-01 10 78637580 78637580 T C KCNMA1 Missense_Mutation p.T1141A 0.27 tolerated_low_confidence(0.09) probably_damaging(0.983) TCGA-BR-6452-01 10 79556266 79556266 C T DLG5 Missense_Mutation p.V1751M 0.08 tolerated(0.05) probably_damaging(0.997) TCGA-BR-6452-01 10 79569349 79569349 C T DLG5 Missense_Mutation p.A1535T 0.10 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 10 79761991 79761991 T C POLR3A Missense_Mutation p.N775D 0.15 deleterious(0) probably_damaging(0.998) TCGA-BR-6452-01 10 79773500 79773500 T C POLR3A Missense_Mutation p.T494A 0.08 tolerated(0.08) benign(0.007) TCGA-BR-6452-01 10 82280515 82280515 A G TSPAN14 3'UTR 0.06 TCGA-BR-6452-01 10 85970802 85970802 G T CDHR1 Missense_Mutation p.A456S 0.10 tolerated(0.09) probably_damaging(0.968) TCGA-BR-6452-01 10 85973041 85973041 G T CDHR1 Missense_Mutation p.K659N 0.08 deleterious(0.02) probably_damaging(0.944) TCGA-BR-6452-01 10 87373349 87373349 G A GRID1 Missense_Mutation p.P806S 0.09 deleterious(0.01) probably_damaging(0.926) TCGA-BR-6452-01 10 88703005 88703005 C T MMRN2 Silent p.T512T 0.31 TCGA-BR-6452-01 10 88705404 88705404 T C MMRN2 Silent p.L69L 0.15 TCGA-BR-6452-01 10 89312069 89312069 G A MINPP1 Missense_Mutation p.R433Q 0.08 tolerated(0.54) benign(0.023) TCGA-BR-6452-01 10 89469058 89469058 G A PAPSS2 Missense_Mutation p.V45M 0.12 deleterious(0.05) possibly_damaging(0.865) TCGA-BR-6452-01 10 89653796 89653798 ATT - PTEN In_Frame_Del p.I33del 0.15 TCGA-BR-6452-01 10 89685303 89685303 G A PTEN Silent p.K66K 0.10 TCGA-BR-6452-01 10 89720812 89720812 A - PTEN Frame_Shift_Del p.N323Mfs*21 0.21 TCGA-BR-6452-01 10 90582657 90582657 C T ANKRD22 3'UTR 0.09 TCGA-BR-6452-01 10 90966740 90966740 G A CH25H Silent p.L104L 0.26 TCGA-BR-6452-01 10 91066414 91066414 A G IFIT2 Missense_Mutation p.K234R 0.14 tolerated(1) benign(0) TCGA-BR-6452-01 10 92502258 92502258 T C HTR7 Missense_Mutation p.K474R 0.11 deleterious_low_confidence(0) possibly_damaging(0.636) TCGA-BR-6452-01 10 93390605 93390605 A T PPP1R3C Missense_Mutation p.D11E 0.11 deleterious(0.05) benign(0.026) TCGA-BR-6452-01 10 93602099 93602099 A G TNKS2 Silent p.V670V 0.11 TCGA-BR-6452-01 10 93711220 93711220 G A BTAF1 Missense_Mutation p.G154D 0.23 deleterious(0) probably_damaging(0.947) TCGA-BR-6452-01 10 93740222 93740222 T G BTAF1 Silent p.S554S 0.12 TCGA-BR-6452-01 10 94047 94047 A G TUBB8 Silent p.C95C 0.21 TCGA-BR-6452-01 10 94373156 94373156 A G KIF11 Missense_Mutation p.N271S 0.25 deleterious(0) possibly_damaging(0.863) TCGA-BR-6452-01 10 94688101 94688101 C T EXOC6 Silent p.D298D 0.08 TCGA-BR-6452-01 10 94822706 94822706 A G CYP26C1 Missense_Mutation p.N220S 0.09 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 10 95110997 95110997 A G MYOF Missense_Mutation p.V1293A 0.11 deleterious(0) possibly_damaging(0.694) TCGA-BR-6452-01 10 95119640 95119640 C A MYOF Missense_Mutation p.V1024F 0.10 deleterious(0) benign(0.285) TCGA-BR-6452-01 10 95660549 95660549 A G SLC35G1 Missense_Mutation p.I134V 0.08 tolerated(0.49) benign(0.013) TCGA-BR-6452-01 10 95720151 95720151 C T PIPSL RNA 0.12 TCGA-BR-6452-01 10 95720159 95720159 C T PIPSL RNA 0.10 TCGA-BR-6452-01 10 95721152 95721152 A G PIPSL RNA 0.15 TCGA-BR-6452-01 10 96033402 96033402 A G PLCE1 Silent p.Q1530Q 0.10 TCGA-BR-6452-01 10 96084175 96084175 G A PLCE1 Missense_Mutation p.E2191K 0.26 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 10 96109949 96109949 A G NOC3L Missense_Mutation p.L350S 0.09 deleterious(0) benign(0.314) TCGA-BR-6452-01 10 96535189 96535189 G A CYP2C19 Missense_Mutation p.R125H 0.09 tolerated(0.05) benign(0.229) TCGA-BR-6452-01 10 97471595 97471595 T - ENTPD1 5'UTR 0.20 TCGA-BR-6452-01 10 97772379 97772380 - T CC2D2B Frame_Shift_Ins p.N73* 0.08 TCGA-BR-6452-01 10 97817790 97817790 T C CCNJ Missense_Mutation p.V315A 0.11 tolerated(0.6) benign(0.001) TCGA-BR-6452-01 10 97817887 97817887 G A CCNJ Silent p.G347G 0.10 TCGA-BR-6452-01 10 98087280 98087280 C T DNTT Silent p.A310A 0.19 TCGA-BR-6452-01 10 98192700 98192700 T C TLL2 Silent p.T128T 0.10 TCGA-BR-6452-01 10 98303917 98303917 T G TM9SF3 Silent p.P367P 0.18 TCGA-BR-6452-01 10 98307727 98307727 T C TM9SF3 Missense_Mutation p.T327A 0.08 tolerated(0.69) benign(0.044) TCGA-BR-6452-01 10 98714929 98714929 A T LCOR Silent p.G184G 0.09 TCGA-BR-6452-01 10 98741550 98741550 A G C10orf12 Missense_Mutation p.I135V 0.08 tolerated(0.3) benign(0.234) TCGA-BR-6452-01 10 98742635 98742636 - A C10orf12 Frame_Shift_Ins p.F499Ifs*3 0.18 TCGA-BR-6452-01 10 99016073 99016073 A G ARHGAP19 Splice_Site p.X309_splice 0.06 TCGA-BR-6452-01 10 99126540 99126540 C T RRP12 Silent p.E1058E 0.24 TCGA-BR-6452-01 10 99236709 99236709 G T MMS19 Missense_Mutation p.L169I 0.07 deleterious(0.01) benign(0.325) TCGA-BR-6452-01 10 99349971 99349971 T A C10orf62 Missense_Mutation p.I106N 0.09 deleterious(0.04) benign(0.295) TCGA-BR-6452-01 10 99968748 99968748 G A R3HCC1L Missense_Mutation p.A293T 0.08 tolerated(0.3) benign(0.009) TCGA-BR-6452-01 11 101324444 101324444 T - TRPC6 Frame_Shift_Del p.R861Gfs*12 0.12 TCGA-BR-6452-01 11 101374854 101374854 A G TRPC6 Silent p.S282S 0.08 TCGA-BR-6452-01 11 101375465 101375465 A G TRPC6 Silent p.L79L 0.10 TCGA-BR-6452-01 11 1016000 1016001 - TGAGA MUC6 Frame_Shift_Ins p.Q2267Hfs*28 0.12 TCGA-BR-6452-01 11 101818760 101818760 A G KIAA1377 Splice_Site p.X132_splice 0.11 TCGA-BR-6452-01 11 102248433 102248433 A G BIRC2 Missense_Mutation p.K525E 0.12 deleterious(0.01) possibly_damaging(0.659) TCGA-BR-6452-01 11 102482514 102482514 C T MMP20 Silent p.A165A 0.10 TCGA-BR-6452-01 11 102487565 102487565 T C MMP20 Missense_Mutation p.K118E 0.10 tolerated(0.42) benign(0.009) TCGA-BR-6452-01 11 102567160 102567160 C T MMP27 Missense_Mutation p.D282N 0.20 tolerated(0.84) benign(0.003) TCGA-BR-6452-01 11 102713491 102713491 G A MMP3 Missense_Mutation p.R88C 0.14 deleterious(0.01) benign(0.25) TCGA-BR-6452-01 11 102933062 102933062 T C DCUN1D5 3'UTR 0.15 TCGA-BR-6452-01 11 102980475 102980475 G A DYNC2H1 Missense_Mutation p.A58T 0.17 benign(0.001) TCGA-BR-6452-01 11 102988470 102988470 C T DYNC2H1 Nonsense_Mutation p.Q293* 0.21 TCGA-BR-6452-01 11 103070066 103070066 C A DYNC2H1 Nonsense_Mutation p.S2650* 0.15 TCGA-BR-6452-01 11 103102032 103102032 C G DYNC2H1 Missense_Mutation p.L3133V 0.20 benign(0.062) TCGA-BR-6452-01 11 103908242 103908242 T C DDI1 Missense_Mutation p.I231T 0.08 deleterious(0) benign(0.063) TCGA-BR-6452-01 11 104776330 104776330 T - RP11-693N9.2 Intron 0.20 TCGA-BR-6452-01 11 104821692 104821692 A G CASP4 Missense_Mutation p.L169P 0.16 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 11 104869751 104869751 T G CASP5 Missense_Mutation p.K332N 0.07 tolerated(1) benign(0.001) TCGA-BR-6452-01 11 105845262 105845262 A G GRIA4 Intron 0.08 TCGA-BR-6452-01 11 105924271 105924271 T A KBTBD3 Missense_Mutation p.D382V 0.09 tolerated(0.33) benign(0.012) TCGA-BR-6452-01 11 106558192 106558192 G A GUCY1A2 3'UTR 0.09 TCGA-BR-6452-01 11 107682454 107682454 T A SLC35F2 Missense_Mutation p.D118V 0.07 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 11 107917050 107917050 A G CUL5 Missense_Mutation p.Q63R 0.13 tolerated(0.53) benign(0.004) TCGA-BR-6452-01 11 108155161 108155161 C A ATM Silent p.V1318V 0.27 TCGA-BR-6452-01 11 108159797 108159797 A - ATM Frame_Shift_Del p.S1403Afs*3 0.23 TCGA-BR-6452-01 11 108164163 108164164 - A ATM Frame_Shift_Ins p.I1581Nfs*5 0.13 TCGA-BR-6452-01 11 108199851 108199851 A G ATM Missense_Mutation p.Y2398C 0.12 deleterious(0) probably_damaging(0.987) TCGA-BR-6452-01 11 10820878 10820878 T - EIF4G2 Frame_Shift_Del p.K806Nfs*10 0.17 TCGA-BR-6452-01 11 10825119 10825121 TCT - EIF4G2 In_Frame_Del p.K240del 0.19 TCGA-BR-6452-01 11 108380159 108380159 A G EXPH5 3'UTR 0.16 TCGA-BR-6452-01 11 108547842 108547842 A G DDX10 Missense_Mutation p.T137A 0.10 deleterious(0.01) benign(0.144) TCGA-BR-6452-01 11 1086052 1086052 G A MUC2 Silent p.T964T 0.26 TCGA-BR-6452-01 11 109294981 109294981 T C C11orf87 3'UTR 0.16 TCGA-BR-6452-01 11 110035934 110035934 G A ZC3H12C Silent p.L708L 0.22 TCGA-BR-6452-01 11 111745746 111745746 T C FDXACB1 Missense_Mutation p.Y592C 0.13 deleterious(0) probably_damaging(0.997) TCGA-BR-6452-01 11 111888543 111888543 T C DIXDC1 Silent p.D634D 0.10 TCGA-BR-6452-01 11 111953289 111953289 A - C11orf57 Frame_Shift_Del p.K161Sfs*20 0.44 TCGA-BR-6452-01 11 112072775 112072775 T G BCO2 Silent p.P352P 0.23 TCGA-BR-6452-01 11 113103011 113103011 C T NCAM1 Silent p.L503L 0.13 TCGA-BR-6452-01 11 113105824 113105824 C T NCAM1 Missense_Mutation p.A637V 0.24 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 11 113210045 113210045 C T TTC12 Silent p.D225D 0.10 TCGA-BR-6452-01 11 113295153 113295153 A T DRD2 Missense_Mutation p.V74D 0.10 deleterious(0) probably_damaging(0.998) TCGA-BR-6452-01 11 113660315 113660315 G A ATF4P4 RNA 0.21 TCGA-BR-6452-01 11 113700069 113700069 T C USP28 Splice_Site p.X304_splice 0.10 TCGA-BR-6452-01 11 11373807 11373807 C T CSNK2A3 Missense_Mutation p.S287N 0.25 tolerated(0.13) benign(0.007) TCGA-BR-6452-01 11 114112918 114112918 T G ZBTB16 Missense_Mutation p.C495G 0.13 tolerated(0.16) benign(0.004) TCGA-BR-6452-01 11 114182929 114182929 C A NNMT Silent p.T175T 0.11 TCGA-BR-6452-01 11 114183046 114183046 C - NNMT Frame_Shift_Del p.L216Wfs*6 0.15 TCGA-BR-6452-01 11 114392823 114392823 T A NXPE1 Missense_Mutation p.D362V 0.09 deleterious(0) probably_damaging(0.952) TCGA-BR-6452-01 11 1155730 1155730 G A MUC5AC Missense_Mutation p.V140M 0.11 deleterious(0) benign(0.217) TCGA-BR-6452-01 11 116661462 116661462 C A APOA5 Missense_Mutation p.Q161H 0.11 tolerated(0.06) benign(0.134) TCGA-BR-6452-01 11 116767020 116767020 G A SIK3 Missense_Mutation p.R214W 0.08 deleterious(0) probably_damaging(0.989) TCGA-BR-6452-01 11 117038342 117038342 G A PAFAH1B2 Missense_Mutation p.C206Y 0.09 tolerated(0.08) benign(0.116) TCGA-BR-6452-01 11 117066583 117066583 C T SIDT2 Silent p.H796H 0.17 TCGA-BR-6452-01 11 117152804 117152804 T C RNF214 Silent p.N510N 0.07 TCGA-BR-6452-01 11 117155864 117155864 A T RNF214 Missense_Mutation p.K703N 0.12 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BR-6452-01 11 117310647 117310647 C T DSCAML1 Missense_Mutation p.A1350T 0.06 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 11 117351946 117351946 A G DSCAML1 Missense_Mutation p.C927R 0.07 deleterious(0.02) benign(0.162) TCGA-BR-6452-01 11 117376239 117376239 G A DSCAML1 Silent p.N724N 0.23 TCGA-BR-6452-01 11 118359369 118359369 T C KMT2A Missense_Mutation p.F1458S 0.10 probably_damaging(0.993) TCGA-BR-6452-01 11 118403848 118403848 G A TMEM25 Missense_Mutation p.R200H 0.20 tolerated(0.27) benign(0.002) TCGA-BR-6452-01 11 118919507 118919507 A G HYOU1 Missense_Mutation p.M695T 0.10 tolerated(0.09) benign(0.005) TCGA-BR-6452-01 11 118922291 118922291 A G HYOU1 Missense_Mutation p.L462P 0.09 tolerated(0.05) benign(0.081) TCGA-BR-6452-01 11 119059156 119059156 G A PDZD3 Missense_Mutation p.V319M 0.09 deleterious(0) possibly_damaging(0.693) TCGA-BR-6452-01 11 119185585 119185585 G A MCAM Missense_Mutation p.R120C 0.17 deleterious(0.05) probably_damaging(0.93) TCGA-BR-6452-01 11 119205959 119205959 G A RNF26 Missense_Mutation p.V43I 0.16 tolerated(1) unknown(0) TCGA-BR-6452-01 11 119217211 119217211 A G MFRP Missense_Mutation p.S5P 0.08 deleterious(0) possibly_damaging(0.634) TCGA-BR-6452-01 11 119243939 119243939 G A USP2 Silent p.D84D 0.25 TCGA-BR-6452-01 11 120169101 120169101 T C POU2F3 Splice_Site p.X88_splice 0.08 TCGA-BR-6452-01 11 120189171 120189171 T C POU2F3 3'UTR 0.18 TCGA-BR-6452-01 11 120319906 120319906 G A ARHGEF12 Missense_Mutation p.R609H 0.14 deleterious(0) probably_damaging(0.985) TCGA-BR-6452-01 11 120996433 120996433 C T TECTA Silent p.D542D 0.10 TCGA-BR-6452-01 11 120998788 120998788 G A TECTA Missense_Mutation p.G701D 0.13 deleterious(0) probably_damaging(0.996) TCGA-BR-6452-01 11 121429410 121429410 G A SORL1 Missense_Mutation p.G925D 0.25 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 11 121454212 121454212 G A SORL1 Missense_Mutation p.G1209E 0.12 deleterious(0) probably_damaging(0.969) TCGA-BR-6452-01 11 1214834 1214834 G A MUC5AC RNA 0.12 TCGA-BR-6452-01 11 122756903 122756903 T C C11orf63 Splice_Site p.X115_splice 0.15 TCGA-BR-6452-01 11 122774952 122774952 T A C11orf63 Missense_Mutation p.S222T 0.09 deleterious(0) probably_damaging(0.976) TCGA-BR-6452-01 11 122774956 122774956 G A C11orf63 Missense_Mutation p.S223N 0.09 deleterious(0) probably_damaging(0.988) TCGA-BR-6452-01 11 122805178 122805178 A G C11orf63 Silent p.V343V 0.20 TCGA-BR-6452-01 11 122929501 122929501 T C HSPA8 Missense_Mutation p.N454S 0.08 deleterious_low_confidence(0.03) benign(0.02) TCGA-BR-6452-01 11 12315220 12315220 A G MICALCL Missense_Mutation p.Y81C 0.05 deleterious(0) probably_damaging(0.959) TCGA-BR-6452-01 11 12316135 12316135 C T MICALCL Missense_Mutation p.A386V 0.10 deleterious(0.03) benign(0.178) TCGA-BR-6452-01 11 123777391 123777391 T G OR8D4 Missense_Mutation p.F85V 0.09 deleterious(0) benign(0.046) TCGA-BR-6452-01 11 123900356 123900356 G A OR10G8 Silent p.A9A 0.08 TCGA-BR-6452-01 11 124135712 124135712 A G OR8G5 Silent p.K330K 0.09 TCGA-BR-6452-01 11 124252523 124252523 A G OR8B2 Silent p.S239S 0.09 TCGA-BR-6452-01 11 124253182 124253182 G A OR8B2 Missense_Mutation p.H20Y 0.15 tolerated_low_confidence(0.07) benign(0.05) TCGA-BR-6452-01 11 124310559 124310559 A G OR8B8 Silent p.C141C 0.26 TCGA-BR-6452-01 11 124310909 124310909 T A OR8B8 Missense_Mutation p.I25F 0.09 tolerated_low_confidence(0.06) benign(0.197) TCGA-BR-6452-01 11 124413100 124413100 C T OR8B12 Missense_Mutation p.G151R 0.10 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-BR-6452-01 11 124413431 124413431 C T OR8B12 Silent p.G40G 0.14 TCGA-BR-6452-01 11 124618372 124618372 C T VSIG2 Silent p.L255L 0.13 TCGA-BR-6452-01 11 124637844 124637844 T C MSANTD2 Missense_Mutation p.D251G 0.11 deleterious_low_confidence(0) possibly_damaging(0.879) TCGA-BR-6452-01 11 124794859 124794859 C T HEPACAM Silent p.R64R 0.08 TCGA-BR-6452-01 11 125547886 125547886 G A ACRV1 Missense_Mutation p.S120L 0.06 deleterious(0.02) benign(0.426) TCGA-BR-6452-01 11 125763663 125763663 T C PUS3 3'UTR 0.09 TCGA-BR-6452-01 11 125765945 125765945 A C PUS3 Missense_Mutation p.F79V 0.06 deleterious(0) possibly_damaging(0.903) TCGA-BR-6452-01 11 126146977 126146977 G A FOXRED1 Silent p.P371P 0.15 TCGA-BR-6452-01 11 1264269 1264269 T C MUC5B Silent p.T2053T 0.06 TCGA-BR-6452-01 11 1265019 1265019 G A MUC5B Silent p.S2303S 0.23 TCGA-BR-6452-01 11 1270634 1270634 G A MUC5B Missense_Mutation p.R4175H 0.08 unknown(0) TCGA-BR-6452-01 11 128840677 128840677 T C ARHGAP32 Silent p.Q1463Q 0.12 TCGA-BR-6452-01 11 129739944 129739944 C T NFRKB Silent p.Q1017Q 0.08 TCGA-BR-6452-01 11 129739947 129739947 G A NFRKB Silent p.T1016T 0.09 TCGA-BR-6452-01 11 132812874 132812874 G A OPCML Silent p.F38F 0.09 TCGA-BR-6452-01 11 133790109 133790109 A G IGSF9B Missense_Mutation p.Y1171H 0.07 deleterious_low_confidence(0) possibly_damaging(0.814) TCGA-BR-6452-01 11 13388247 13388247 G A ARNTL Silent p.L196L 0.25 TCGA-BR-6452-01 11 134244918 134244918 C - GLB1L2 Frame_Shift_Del p.H628Tfs*29 0.30 TCGA-BR-6452-01 11 13729544 13729544 T C FAR1 Missense_Mutation p.Y155H 0.06 deleterious(0) probably_damaging(0.992) TCGA-BR-6452-01 11 14502603 14502603 T C COPB1 Missense_Mutation p.D333G 0.08 deleterious(0.04) benign(0.308) TCGA-BR-6452-01 11 14508019 14508019 C T COPB1 Missense_Mutation p.R244H 0.07 deleterious(0) probably_damaging(0.997) TCGA-BR-6452-01 11 14808106 14808106 A G PDE3B Missense_Mutation p.S385G 0.08 deleterious(0.03) probably_damaging(0.995) TCGA-BR-6452-01 11 14856574 14856574 T A PDE3B Nonsense_Mutation p.Y751* 0.08 TCGA-BR-6452-01 11 16010610 16010611 - T SOX6 Frame_Shift_Ins p.D614Gfs*2 0.09 TCGA-BR-6452-01 11 17156512 17156512 A C PIK3C2A Missense_Mutation p.D654E 0.07 tolerated(0.31) benign(0.02) TCGA-BR-6452-01 11 17452414 17452414 T C ABCC8 Silent p.T588T 0.08 TCGA-BR-6452-01 11 17548843 17548843 G T USH1C Silent p.S141S 0.11 TCGA-BR-6452-01 11 17741356 17741356 C T MYOD1 Silent p.R9R 0.19 TCGA-BR-6452-01 11 17757940 17757940 G A KCNC1 Missense_Mutation p.A131T 0.40 tolerated(0.54) benign(0.103) TCGA-BR-6452-01 11 17793578 17793578 G A KCNC1 Missense_Mutation p.V313I 0.14 tolerated(0.11) probably_damaging(0.966) TCGA-BR-6452-01 11 1780829 1780830 - G CTSD Frame_Shift_Ins p.Q90Pfs*50 0.19 TCGA-BR-6452-01 11 18743101 18743101 T C IGSF22 Missense_Mutation p.N120S 0.07 tolerated(0.3) possibly_damaging(0.665) TCGA-BR-6452-01 11 19259413 19259413 T G E2F8 Missense_Mutation p.K94N 0.10 tolerated(0.14) possibly_damaging(0.511) TCGA-BR-6452-01 11 19970371 19970371 C - NAV2 Frame_Shift_Del p.S822Qfs*29 0.19 TCGA-BR-6452-01 11 20122624 20122624 C G NAV2 Missense_Mutation p.A2167G 0.11 deleterious(0) probably_damaging(0.989) TCGA-BR-6452-01 11 20622881 20622881 C T SLC6A5 Silent p.C70C 0.24 TCGA-BR-6452-01 11 20625905 20625906 - G SLC6A5 Frame_Shift_Ins p.Y207Vfs*117 0.09 TCGA-BR-6452-01 11 2154747 2154747 C T IGF2 Silent p.P158P 0.17 TCGA-BR-6452-01 11 22844655 22844655 A G SVIP 3'UTR 0.14 TCGA-BR-6452-01 11 2356628 2356628 T - CD81-AS1 Intron 0.21 TCGA-BR-6452-01 11 25100135 25100136 - A LUZP2 Frame_Shift_Ins p.A327Sfs*10 0.08 TCGA-BR-6452-01 11 26714070 26714070 G A SLC5A12 Silent p.S373S 0.15 TCGA-BR-6452-01 11 27148839 27148839 G T BBOX1 Splice_Site p.X335_splice 0.12 TCGA-BR-6452-01 11 27395180 27395180 G T LGR4 Missense_Mutation p.L433M 0.10 deleterious(0.01) probably_damaging(0.981) TCGA-BR-6452-01 11 28134866 28134866 T G METTL15 Intron 0.08 TCGA-BR-6452-01 11 2950465 2950465 G - PHLDA2 Frame_Shift_Del p.R44Afs*124 0.18 TCGA-BR-6452-01 11 30358350 30358350 T C ARL14EP 3'UTR 0.24 TCGA-BR-6452-01 11 3048007 3048007 A G CARS Missense_Mutation p.V351A 0.09 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 11 30937073 30937073 T A DCDC1 Missense_Mutation p.H1213L 0.06 tolerated(1) benign(0.402) TCGA-BR-6452-01 11 3141815 3141815 C T OSBPL5 Missense_Mutation p.V148M 0.21 deleterious(0) probably_damaging(0.982) TCGA-BR-6452-01 11 31436468 31436468 A - DNAJC24 Frame_Shift_Del p.R76Efs*12 0.27 TCGA-BR-6452-01 11 314932 314932 G A IFITM1 Missense_Mutation p.R66K 0.10 deleterious(0.02) benign(0.22) TCGA-BR-6452-01 11 32460534 32460534 C A WT1 5'Flank 0.24 TCGA-BR-6452-01 11 3249355 3249355 G A MRGPRE Silent p.L224L 0.27 TCGA-BR-6452-01 11 32610169 32610169 T A EIF3M Missense_Mutation p.S69T 0.09 deleterious(0) possibly_damaging(0.795) TCGA-BR-6452-01 11 32635181 32635181 T - CCDC73 Frame_Shift_Del p.T895Lfs*8 0.23 TCGA-BR-6452-01 11 32954606 32954606 C A QSER1 Missense_Mutation p.S472Y 0.09 deleterious(0) probably_damaging(0.99) TCGA-BR-6452-01 11 33565013 33565013 C - KIAA1549L Frame_Shift_Del p.Q339Rfs*34 0.09 TCGA-BR-6452-01 11 33566723 33566723 A G KIAA1549L Missense_Mutation p.R765G 0.06 deleterious(0) benign(0.411) TCGA-BR-6452-01 11 33880859 33880859 G A LMO2 3'UTR 0.43 TCGA-BR-6452-01 11 34144031 34144031 A T NAT10 Missense_Mutation p.E269V 0.09 deleterious(0) possibly_damaging(0.866) TCGA-BR-6452-01 11 34472556 34472556 T A CAT Missense_Mutation p.V87D 0.06 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 11 34905014 34905014 T C APIP Missense_Mutation p.T167A 0.24 deleterious(0.02) benign(0.075) TCGA-BR-6452-01 11 34988311 34988311 C - PDHX Frame_Shift_Del p.R257Gfs*3 0.22 TCGA-BR-6452-01 11 35198138 35198138 C T CD44 Silent p.C28C 0.14 TCGA-BR-6452-01 11 35513631 35513631 G A PAMR1 Missense_Mutation p.A114V 0.11 deleterious(0.01) probably_damaging(0.947) TCGA-BR-6452-01 11 35747662 35747662 C T TRIM44 Missense_Mutation p.A313V 0.11 tolerated(1) unknown(0) TCGA-BR-6452-01 11 36516539 36516539 A G TRAF6 Missense_Mutation p.L222P 0.06 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 11 36597940 36597940 T C RAG1 Missense_Mutation p.L1029S 0.07 deleterious_low_confidence(0.01) benign(0.211) TCGA-BR-6452-01 11 3681478 3681478 C - ART1 Frame_Shift_Del p.F246Lfs*6 0.22 TCGA-BR-6452-01 11 3700923 3700923 T C NUP98 Missense_Mutation p.E1645G 0.16 deleterious(0) probably_damaging(0.997) TCGA-BR-6452-01 11 372695 372695 G - B4GALNT4 Frame_Shift_Del p.A99Lfs*6 0.12 TCGA-BR-6452-01 11 4112932 4112932 T A STIM1 Silent p.A654A 0.10 TCGA-BR-6452-01 11 4139675 4139675 G A RRM1 Missense_Mutation p.G259D 0.12 deleterious_low_confidence(0.03) possibly_damaging(0.609) TCGA-BR-6452-01 11 43413401 43413401 C T TTC17 Missense_Mutation p.P188S 0.11 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BR-6452-01 11 4409705 4409705 T C TRIM21 Missense_Mutation p.N187S 0.07 tolerated(0.93) benign(0.009) TCGA-BR-6452-01 11 44104792 44104792 G T ACCS Missense_Mutation p.E395D 0.10 tolerated(0.08) benign(0.17) TCGA-BR-6452-01 11 4410964 4410964 C T TRIM21 Missense_Mutation p.A142T 0.20 tolerated(0.16) benign(0.035) TCGA-BR-6452-01 11 4510704 4510704 G - OR52K1 Frame_Shift_Del p.D193Tfs*55 0.15 TCGA-BR-6452-01 11 4511027 4511027 G A OR52K1 Silent p.K299K 0.06 TCGA-BR-6452-01 11 45204460 45204461 - C PRDM11 Frame_Shift_Ins p.V94Gfs*5 0.16 TCGA-BR-6452-01 11 45246062 45246062 C T PRDM11 Missense_Mutation p.A346V 0.08 deleterious_low_confidence(0.04) possibly_damaging(0.535) TCGA-BR-6452-01 11 45935936 45935936 T C PEX16 Missense_Mutation p.T209A 0.10 tolerated(0.75) benign(0.001) TCGA-BR-6452-01 11 45948373 45948373 C - GYLTL1B Frame_Shift_Del p.R428Gfs*30 0.27 TCGA-BR-6452-01 11 46105778 46105778 C T PHF21A 5'UTR 0.14 TCGA-BR-6452-01 11 4615865 4615865 C A OR52I1 Missense_Mutation p.S199R 0.06 deleterious(0.04) probably_damaging(0.968) TCGA-BR-6452-01 11 4621846 4621846 C A TRIM68 Missense_Mutation p.G373V 0.29 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 11 46419420 46419420 G A AMBRA1 Silent p.G1069G 0.21 TCGA-BR-6452-01 11 47236569 47236569 C T DDB2 5'UTR 0.16 TCGA-BR-6452-01 11 47296132 47296132 C T MADD Silent p.S27S 0.09 TCGA-BR-6452-01 11 47371349 47371349 G A MYBPC3 Silent p.H210H 0.20 TCGA-BR-6452-01 11 47444219 47444219 C A PSMC3 Missense_Mutation p.G264C 0.21 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 11 47464237 47464237 G A RAPSN Missense_Mutation p.R221C 0.18 deleterious(0) probably_damaging(0.913) TCGA-BR-6452-01 11 47504275 47504275 A C CELF1 Missense_Mutation p.L246R 0.08 deleterious(0.01) possibly_damaging(0.883) TCGA-BR-6452-01 11 47736193 47736193 C A AGBL2 Missense_Mutation p.A4S 0.06 deleterious_low_confidence(0.01) benign(0.424) TCGA-BR-6452-01 11 47754182 47754182 T C FNBP4 Missense_Mutation p.N576S 0.09 tolerated(0.36) benign(0.057) TCGA-BR-6452-01 11 47754208 47754208 G A FNBP4 Silent p.D567D 0.16 TCGA-BR-6452-01 11 48131619 48131619 G A PTPRJ Missense_Mutation p.A36T 0.25 deleterious_low_confidence(0) benign(0.011) TCGA-BR-6452-01 11 48146565 48146565 C A PTPRJ Missense_Mutation p.P307H 0.09 tolerated(0.06) benign(0.043) TCGA-BR-6452-01 11 48166633 48166633 C T PTPRJ Silent p.S956S 0.08 TCGA-BR-6452-01 11 48185166 48185166 T C PTPRJ Missense_Mutation p.C1239R 0.08 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 11 4825366 4825366 G T OR52R1 Missense_Mutation p.P82H 0.26 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 11 48328111 48328111 C T OR4S1 Missense_Mutation p.L113F 0.11 deleterious(0) probably_damaging(0.997) TCGA-BR-6452-01 11 48346544 48346544 G A OR4C3 Missense_Mutation p.A18T 0.07 tolerated_low_confidence(0.05) benign(0.04) TCGA-BR-6452-01 11 4870066 4870066 C T OR51S1 Missense_Mutation p.A125T 0.22 tolerated(0.38) benign(0.096) TCGA-BR-6452-01 11 4903898 4903898 C A OR51T1 Missense_Mutation p.L284M 0.09 tolerated(1) benign(0.002) TCGA-BR-6452-01 11 4945098 4945098 T C OR51G1 Missense_Mutation p.I158V 0.11 tolerated(0.72) benign(0.086) TCGA-BR-6452-01 11 4976522 4976522 A T OR51A2 Missense_Mutation p.V141D 0.18 tolerated(0.11) benign(0.003) TCGA-BR-6452-01 11 49974337 49974337 T C OR4C13 Silent p.Y121Y 0.17 TCGA-BR-6452-01 11 50003722 50003723 - A OR4C12 Frame_Shift_Ins p.G106Wfs*4 0.08 TCGA-BR-6452-01 11 5009533 5009533 T C MMP26 Missense_Mutation p.F31S 0.09 tolerated(0.58) probably_damaging(0.921) TCGA-BR-6452-01 11 5013200 5013200 A T MMP26 Missense_Mutation p.N201I 0.13 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 11 5020602 5020602 T C OR51L1 Silent p.H130H 0.06 TCGA-BR-6452-01 11 51412149 51412149 A C OR4A5 Missense_Mutation p.L83V 0.12 deleterious_low_confidence(0) possibly_damaging(0.652) TCGA-BR-6452-01 11 51412388 51412388 T C OR4A5 Missense_Mutation p.Q3R 0.18 tolerated_low_confidence(0.12) benign(0.004) TCGA-BR-6452-01 11 5142602 5142602 C T OR52A4 RNA 0.23 TCGA-BR-6452-01 11 5221892 5221892 A G OR51V1 Silent p.P13P 0.10 TCGA-BR-6452-01 11 5444364 5444364 A G OR51Q1 Missense_Mutation p.K312E 0.14 deleterious(0.03) benign(0.08) TCGA-BR-6452-01 11 5510093 5510093 G T OR52D1 Missense_Mutation p.A53S 0.20 tolerated(0.41) benign(0.003) TCGA-BR-6452-01 11 5530154 5530154 T C UBQLN3 Missense_Mutation p.N212S 0.08 deleterious(0) probably_damaging(0.985) TCGA-BR-6452-01 11 55541190 55541190 A G OR5D13 Missense_Mutation p.T93A 0.07 tolerated(0.2) benign(0.033) TCGA-BR-6452-01 11 55563075 55563075 C T OR5D14 Missense_Mutation p.A15V 0.08 tolerated(0.21) benign(0.001) TCGA-BR-6452-01 11 55563619 55563619 C - OR5D14 Frame_Shift_Del p.H198Tfs*17 0.23 TCGA-BR-6452-01 11 55579836 55579836 A T OR5L1 Missense_Mutation p.K298N 0.10 deleterious(0.01) benign(0.03) TCGA-BR-6452-01 11 55587251 55587251 T A OR5D18 Missense_Mutation p.I49N 0.12 deleterious(0) possibly_damaging(0.71) TCGA-BR-6452-01 11 55703185 55703185 C T OR5I1 Missense_Mutation p.R231H 0.23 tolerated(0.37) benign(0.005) TCGA-BR-6452-01 11 55703617 55703617 A G OR5I1 Missense_Mutation p.F87S 0.14 deleterious(0) benign(0.261) TCGA-BR-6452-01 11 55761391 55761391 A C OR5F1 Silent p.A237A 0.14 TCGA-BR-6452-01 11 55798599 55798599 C G OR5AS1 Missense_Mutation p.S235R 0.10 tolerated(1) benign(0.026) TCGA-BR-6452-01 11 55890557 55890557 G A OR8H3 Missense_Mutation p.A237T 0.08 deleterious(0.02) possibly_damaging(0.764) TCGA-BR-6452-01 11 55904662 55904663 - A OR8J3 Frame_Shift_Ins p.Y178Lfs*3 0.08 TCGA-BR-6452-01 11 5602252 5602252 T A OR52B6 Missense_Mutation p.I49N 0.08 deleterious(0) possibly_damaging(0.642) TCGA-BR-6452-01 11 5602389 5602389 A G OR52B6 Missense_Mutation p.T95A 0.09 deleterious(0) probably_damaging(0.985) TCGA-BR-6452-01 11 5602413 5602413 G A OR52B6 Missense_Mutation p.A103T 0.09 tolerated(0.08) benign(0.004) TCGA-BR-6452-01 11 56057653 56057653 C T OR8H1 Missense_Mutation p.V296I 0.10 deleterious(0) benign(0.32) TCGA-BR-6452-01 11 56085879 56085879 A G OR8K3 Missense_Mutation p.M33V 0.11 tolerated_low_confidence(0.21) benign(0) TCGA-BR-6452-01 11 56237709 56237709 T - OR5M3 Frame_Shift_Del p.T89Qfs*8 0.12 TCGA-BR-6452-01 11 56409175 56409175 A G OR5AP2 Silent p.C247C 0.20 TCGA-BR-6452-01 11 56467959 56467959 C T OR9G1 Silent p.G32G 0.07 TCGA-BR-6452-01 11 56510828 56510828 C T OR9G4 Missense_Mutation p.A154T 0.19 tolerated(0.09) benign(0.002) TCGA-BR-6452-01 11 5687267 5687267 T - TRIM5 Frame_Shift_Del p.N271Ifs*11 0.29 TCGA-BR-6452-01 11 5700312 5700312 A G TRIM5 Missense_Mutation p.S169P 0.11 deleterious(0.01) probably_damaging(0.944) TCGA-BR-6452-01 11 57003818 57003818 A G APLNR Missense_Mutation p.Y221H 0.09 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 11 57068388 57068388 G A TNKS1BP1 Missense_Mutation p.T1700M 0.07 deleterious(0) possibly_damaging(0.599) TCGA-BR-6452-01 11 57076651 57076651 A G TNKS1BP1 Silent p.S1178S 0.10 TCGA-BR-6452-01 11 57440666 57440666 C T ZDHHC5 Missense_Mutation p.T35M 0.28 tolerated(0.06) benign(0.177) TCGA-BR-6452-01 11 57466855 57466857 AGA - ZDHHC5 In_Frame_Del p.E651del 0.28 TCGA-BR-6452-01 11 57996067 57996067 T C OR10Q1 Missense_Mutation p.K94R 0.13 tolerated(0.23) benign(0.023) TCGA-BR-6452-01 11 58190409 58190409 T C OR5B2 Missense_Mutation p.E109G 0.08 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-BR-6452-01 11 582040 582040 A G PHRF1 Missense_Mutation p.D58G 0.25 tolerated(0.18) benign(0.001) TCGA-BR-6452-01 11 58275329 58275329 G A OR5B21 Missense_Mutation p.R84W 0.17 deleterious_low_confidence(0.01) benign(0) TCGA-BR-6452-01 11 58478068 58478068 C A GLYAT Missense_Mutation p.K161N 0.07 deleterious(0.05) benign(0.151) TCGA-BR-6452-01 11 58893474 58893477 ACAC - FAM111B Frame_Shift_Del p.H637Rfs*68 0.14 TCGA-BR-6452-01 11 58949402 58949402 A G DTX4 Silent p.V134V 0.10 TCGA-BR-6452-01 11 58978613 58978613 A G MPEG1 Missense_Mutation p.Y576H 0.06 deleterious(0.01) probably_damaging(0.99) TCGA-BR-6452-01 11 58979219 58979219 T C MPEG1 Missense_Mutation p.T374A 0.25 tolerated(0.13) benign(0.01) TCGA-BR-6452-01 11 5905954 5905954 T C OR52E4 Silent p.S144S 0.06 TCGA-BR-6452-01 11 592628 592628 A G PHRF1 Missense_Mutation p.S192G 0.06 deleterious(0) benign(0.245) TCGA-BR-6452-01 11 59271510 59271510 C T OR4D11 Silent p.V154V 0.12 TCGA-BR-6452-01 11 59814517 59814517 T C OOSP2 Silent p.L150L 0.07 TCGA-BR-6452-01 11 59814595 59814595 A - OOSP2 3'UTR 0.16 TCGA-BR-6452-01 11 6048082 6048082 C T OR56A1 Missense_Mutation p.V285I 0.10 tolerated(0.23) benign(0.03) TCGA-BR-6452-01 11 60609969 60609969 A G CCDC86 Silent p.A124A 0.10 TCGA-BR-6452-01 11 60615443 60615443 C T CCDC86 Missense_Mutation p.R269W 0.12 deleterious(0.03) probably_damaging(0.959) TCGA-BR-6452-01 11 60615518 60615518 C A CCDC86 Missense_Mutation p.R294S 0.08 deleterious(0.05) possibly_damaging(0.561) TCGA-BR-6452-01 11 60617771 60617771 G A CCDC86 Silent p.P352P 0.12 TCGA-BR-6452-01 11 60637016 60637016 C T ZP1 Missense_Mutation p.R109C 0.17 deleterious(0) probably_damaging(0.92) TCGA-BR-6452-01 11 60642608 60642608 G A ZP1 Missense_Mutation p.R554Q 0.08 deleterious(0.05) benign(0.075) TCGA-BR-6452-01 11 60689443 60689443 C T TMEM109 Missense_Mutation p.P180S 0.11 deleterious(0.03) probably_damaging(0.999) TCGA-BR-6452-01 11 60783197 60783197 C A CD6 Missense_Mutation p.P467H 0.12 deleterious(0.02) possibly_damaging(0.88) TCGA-BR-6452-01 11 61079550 61079550 C T DDB1 Silent p.A692A 0.10 TCGA-BR-6452-01 11 61257286 61257286 A T PPP1R32 Missense_Mutation p.Q359L 0.07 deleterious(0) benign(0.006) TCGA-BR-6452-01 11 61533179 61533179 C T MYRF Silent p.S43S 0.24 TCGA-BR-6452-01 11 61615659 61615659 G A FADS2 Missense_Mutation p.R216H 0.14 tolerated(0.17) benign(0.381) TCGA-BR-6452-01 11 61732893 61732893 A G FTH1 Missense_Mutation p.L70P 0.10 deleterious(0.02) possibly_damaging(0.859) TCGA-BR-6452-01 11 61959627 61959627 C T SCGB1D1 Missense_Mutation p.P52L 0.10 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 11 62298283 62298283 T C AHNAK Silent p.L1202L 0.05 TCGA-BR-6452-01 11 62301413 62301413 G A AHNAK Missense_Mutation p.A159V 0.11 probably_damaging(0.998) TCGA-BR-6452-01 11 62338549 62338549 C T EEF1G Missense_Mutation p.R137Q 0.10 tolerated(0.35) benign(0.023) TCGA-BR-6452-01 11 62394111 62394111 G A GANAB Nonsense_Mutation p.R837* 0.14 TCGA-BR-6452-01 11 6239971 6239971 C T FAM160A2 Missense_Mutation p.V432I 0.20 tolerated(0.12) possibly_damaging(0.451) TCGA-BR-6452-01 11 6243821 6243821 T A FAM160A2 Missense_Mutation p.I348F 0.10 deleterious(0.01) possibly_damaging(0.866) TCGA-BR-6452-01 11 62520498 62520498 T A ZBTB3 Silent p.P263P 0.16 TCGA-BR-6452-01 11 62569076 62569076 A G NXF1 Missense_Mutation p.S223P 0.09 tolerated(0.14) benign(0.014) TCGA-BR-6452-01 11 62600597 62600597 G T WDR74 Missense_Mutation p.P329T 0.12 tolerated(0.56) benign(0.011) TCGA-BR-6452-01 11 62677758 62677758 T G CHRM1 Missense_Mutation p.Y272S 0.13 tolerated(0.64) benign(0.064) TCGA-BR-6452-01 11 6292586 6292587 - C CCKBR Frame_Shift_Ins p.L388Pfs*36 0.11 TCGA-BR-6452-01 11 63411656 63411657 - A ATL3 Frame_Shift_Ins p.L232Ffs*3 0.08 TCGA-BR-6452-01 11 63472327 63472327 C A RTN3 Silent p.S49S 0.11 TCGA-BR-6452-01 11 63488173 63488173 A G RTN3 Silent p.V733V 0.08 TCGA-BR-6452-01 11 63681532 63681532 C T RCOR2 Missense_Mutation p.G262D 0.12 deleterious(0.01) possibly_damaging(0.818) TCGA-BR-6452-01 11 63970965 63970965 A G STIP1 Missense_Mutation p.N477S 0.13 tolerated(0.52) benign(0.004) TCGA-BR-6452-01 11 64026012 64026012 C T PLCB3 Silent p.C360C 0.11 TCGA-BR-6452-01 11 64031258 64031258 G A PLCB3 Missense_Mutation p.D851N 0.20 tolerated(0.16) benign(0.415) TCGA-BR-6452-01 11 64032685 64032685 C T PLCB3 Missense_Mutation p.A943V 0.20 tolerated(0.18) benign(0.038) TCGA-BR-6452-01 11 64037796 64037796 C T BAD Missense_Mutation p.R131H 0.09 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 11 64367342 64367342 C T SLC22A12 Missense_Mutation p.A422V 0.26 tolerated(0.08) possibly_damaging(0.886) TCGA-BR-6452-01 11 64453147 64453147 C T NRXN2 Missense_Mutation p.D375N 0.20 deleterious(0.04) benign(0.001) TCGA-BR-6452-01 11 64508434 64508434 G A RASGRP2 Silent p.I119I 0.16 TCGA-BR-6452-01 11 64525745 64525745 A - PYGM Frame_Shift_Del p.F167Lfs*128 0.13 TCGA-BR-6452-01 11 64540944 64540944 A G SF1 Missense_Mutation p.L190P 0.10 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 11 64566297 64566297 A G MAP4K2 Missense_Mutation p.W356R 0.05 tolerated(0.42) benign(0.265) TCGA-BR-6452-01 11 64566894 64566894 G T MAP4K2 Missense_Mutation p.P351Q 0.09 tolerated(0.67) benign(0.095) TCGA-BR-6452-01 11 64884013 64884013 T C ZNHIT2 Silent p.V371V 0.08 TCGA-BR-6452-01 11 64939752 64939752 C T SPDYC Silent p.R98R 0.25 TCGA-BR-6452-01 11 65049201 65049201 G A POLA2 Missense_Mutation p.E321K 0.25 deleterious(0.01) benign(0.285) TCGA-BR-6452-01 11 65178714 65178714 C T FRMD8 Silent p.G426G 0.12 TCGA-BR-6452-01 11 65393441 65393441 C T PCNXL3 Missense_Mutation p.P1099S 0.17 deleterious(0) possibly_damaging(0.893) TCGA-BR-6452-01 11 65403965 65403965 C T PCNXL3 Silent p.P1899P 0.25 TCGA-BR-6452-01 11 65767122 65767122 A G EIF1AD Missense_Mutation p.I74T 0.09 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 11 65771097 65771097 G A BANF1 Missense_Mutation p.A42T 0.07 deleterious(0.02) possibly_damaging(0.887) TCGA-BR-6452-01 11 6593248 6593248 C T DNHD1 3'UTR 0.24 TCGA-BR-6452-01 11 66039664 66039664 G - RAB1B Frame_Shift_Del p.V43Wfs*57 0.09 TCGA-BR-6452-01 11 66052412 66052412 G A YIF1A Silent p.L223L 0.08 TCGA-BR-6452-01 11 66106244 66106244 A C BRMS1 Missense_Mutation p.V214G 0.08 deleterious(0.02) benign(0.315) TCGA-BR-6452-01 11 66193526 66193526 C - NPAS4 3'UTR 0.18 TCGA-BR-6452-01 11 66288771 66288771 G T BBS1 Nonsense_Mutation p.E252* 0.07 TCGA-BR-6452-01 11 66357969 66357969 T A CCDC87 Missense_Mutation p.T840S 0.10 tolerated(0.69) benign(0.001) TCGA-BR-6452-01 11 6643323 6643323 G - DCHS1 Frame_Shift_Del p.P3195Qfs*200 0.12 TCGA-BR-6452-01 11 66444271 66444271 G T RBM4B Missense_Mutation p.L94I 0.06 deleterious(0.03) possibly_damaging(0.895) TCGA-BR-6452-01 11 66453564 66453564 G A SPTBN2 Silent p.S2317S 0.25 TCGA-BR-6452-01 11 66476409 66476409 C T SPTBN2 Silent p.T385T 0.09 TCGA-BR-6452-01 11 66555668 66555668 G A C11orf80 Silent p.L187L 0.10 TCGA-BR-6452-01 11 66613379 66613379 G T RCE1 Missense_Mutation p.G268V 0.07 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 11 6661560 6661560 G A DCHS1 Missense_Mutation p.R429W 0.31 deleterious(0.02) possibly_damaging(0.512) TCGA-BR-6452-01 11 66617874 66617874 G A PC Silent p.Y845Y 0.19 TCGA-BR-6452-01 11 67017889 67017889 A T KDM2A Silent p.G796G 0.10 TCGA-BR-6452-01 11 6703476 6703481 GGCAGG - MRPL17 In_Frame_Del p.L135_P136del 0.20 TCGA-BR-6452-01 11 67201901 67201901 G A RPS6KB2 Silent p.P367P 0.17 TCGA-BR-6452-01 11 67270088 67270088 G A PITPNM1 Silent p.H60H 0.17 TCGA-BR-6452-01 11 67287411 67287411 A G CABP2 Missense_Mutation p.F164L 0.11 deleterious(0.02) probably_damaging(0.996) TCGA-BR-6452-01 11 67432984 67432984 C T ALDH3B2 Missense_Mutation p.G160S 0.08 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 11 67799623 67799623 G A NDUFS8 Missense_Mutation p.R2H 0.30 deleterious_low_confidence(0.05) benign(0.023) TCGA-BR-6452-01 11 68031218 68031218 C T C11orf24 Silent p.V6V 0.17 TCGA-BR-6452-01 11 6806618 6806618 T C OR2AG1 Missense_Mutation p.F117S 0.10 tolerated(0.06) possibly_damaging(0.846) TCGA-BR-6452-01 11 687961 687961 A G DEAF1 Missense_Mutation p.V205A 0.11 deleterious(0) probably_damaging(0.944) TCGA-BR-6452-01 11 6891104 6891104 C A OR10A2 Missense_Mutation p.P40H 0.05 deleterious(0.05) benign(0.013) TCGA-BR-6452-01 11 70007370 70007370 G A ANO1 Missense_Mutation p.R561Q 0.22 tolerated(0.36) probably_damaging(0.986) TCGA-BR-6452-01 11 7021635 7021635 A T ZNF214 Missense_Mutation p.S427T 0.12 deleterious(0) possibly_damaging(0.573) TCGA-BR-6452-01 11 71192428 71192429 - T NADSYN1 Frame_Shift_Ins p.L344Ffs*42 0.08 TCGA-BR-6452-01 11 71209571 71209571 T A NADSYN1 Missense_Mutation p.N689K 0.10 tolerated(0.51) benign(0.001) TCGA-BR-6452-01 11 71276712 71276712 G A KRTAP5-10 Missense_Mutation p.G27S 0.14 unknown(0) TCGA-BR-6452-01 11 71710990 71710990 C T IL18BP 5'UTR 0.27 TCGA-BR-6452-01 11 71720311 71720311 T C NUMA1 Intron 0.19 TCGA-BR-6452-01 11 71932594 71932594 C A FOLR2 Missense_Mutation p.L186I 0.11 tolerated(1) benign(0.051) TCGA-BR-6452-01 11 71942175 71942175 A G INPPL1 Missense_Mutation p.E480G 0.08 deleterious(0) probably_damaging(0.993) TCGA-BR-6452-01 11 71942618 71942618 T C INPPL1 Missense_Mutation p.V525A 0.09 deleterious(0) probably_damaging(0.925) TCGA-BR-6452-01 11 71946494 71946494 C T INPPL1 Silent p.Y886Y 0.23 TCGA-BR-6452-01 11 71946764 71946764 C - INPPL1 Frame_Shift_Del p.S904Lfs*54 0.10 TCGA-BR-6452-01 11 71948754 71948754 C T INPPL1 Missense_Mutation p.R1156W 0.12 deleterious(0.01) possibly_damaging(0.689) TCGA-BR-6452-01 11 722548 722548 C T EPS8L2 Missense_Mutation p.R403C 0.35 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 11 72295608 72295608 C T PDE2A Silent p.K508K 0.22 TCGA-BR-6452-01 11 74009355 74009355 C T P4HA3 Missense_Mutation p.A207T 0.08 deleterious(0) benign(0.38) TCGA-BR-6452-01 11 74315765 74315765 C T POLD3 Nonsense_Mutation p.R49* 0.18 TCGA-BR-6452-01 11 7439228 7439228 A T SYT9 Silent p.R402R 0.09 TCGA-BR-6452-01 11 74421942 74421942 C T CHRDL2 Silent p.E128E 0.10 TCGA-BR-6452-01 11 74993028 74993028 G A ARRB1 Missense_Mutation p.P131L 0.08 deleterious(0) possibly_damaging(0.853) TCGA-BR-6452-01 11 75115222 75115222 C T RPS3 Missense_Mutation p.T186I 0.17 tolerated(0.28) benign(0.016) TCGA-BR-6452-01 11 75115466 75115466 T A RPS3 Intron 0.22 TCGA-BR-6452-01 11 755935 755935 G A TALDO1 Missense_Mutation p.A52T 0.12 deleterious(0.01) benign(0.261) TCGA-BR-6452-01 11 76062235 76062235 C - PRKRIR Frame_Shift_Del p.D655Ifs*2 0.08 TCGA-BR-6452-01 11 76507436 76507436 T A TSKU Missense_Mutation p.L259Q 0.10 deleterious(0) probably_damaging(0.995) TCGA-BR-6452-01 11 7672093 7672093 T C PPFIBP2 Missense_Mutation p.V715A 0.11 deleterious(0.02) probably_damaging(0.999) TCGA-BR-6452-01 11 76814187 76814187 A G OMP Missense_Mutation p.D101G 0.12 deleterious_low_confidence(0) probably_damaging(0.947) TCGA-BR-6452-01 11 7686758 7686758 G T CYB5R2 Silent p.G226G 0.15 TCGA-BR-6452-01 11 7693999 7693999 G A CYB5R2 Silent p.L20L 0.10 TCGA-BR-6452-01 11 7718081 7718081 A - OVCH2 Frame_Shift_Del p.S358Pfs*3 0.10 TCGA-BR-6452-01 11 77301286 77301288 CTT - AQP11 In_Frame_Del p.F85del 0.24 TCGA-BR-6452-01 11 77409545 77409545 T G RSF1 Missense_Mutation p.N901T 0.08 deleterious(0) probably_damaging(0.974) TCGA-BR-6452-01 11 77639459 77639459 T C INTS4 Missense_Mutation p.T434A 0.13 tolerated(0.49) benign(0.002) TCGA-BR-6452-01 11 77817965 77817965 G A ALG8 Missense_Mutation p.P356S 0.09 deleterious(0.05) benign(0.145) TCGA-BR-6452-01 11 77885584 77885584 G A KCTD21 Missense_Mutation p.T6M 0.17 deleterious(0) probably_damaging(0.985) TCGA-BR-6452-01 11 7817752 7817752 C T OR5P2 Silent p.L246L 0.19 TCGA-BR-6452-01 11 78369545 78369545 C T TENM4 Missense_Mutation p.G2623E 0.18 deleterious(0.01) benign(0.359) TCGA-BR-6452-01 11 7981836 7981836 G - NLRP10 Frame_Shift_Del p.R442Gfs*6 0.09 TCGA-BR-6452-01 11 8251944 8251944 G A LMO1 Missense_Mutation p.H45Y 0.14 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 11 82880832 82880832 T C PCF11 Missense_Mutation p.F1152S 0.10 deleterious(0) possibly_damaging(0.786) TCGA-BR-6452-01 11 85445705 85445705 G T SYTL2 Missense_Mutation p.P222T 0.09 tolerated(0.26) benign(0.184) TCGA-BR-6452-01 11 85468807 85468807 G T SYTL2 5'UTR 0.09 TCGA-BR-6452-01 11 86017344 86017344 T C C11orf73 Missense_Mutation p.Y30H 0.12 deleterious(0.03) benign(0.015) TCGA-BR-6452-01 11 86097108 86097108 G - CCDC81 Frame_Shift_Del p.N34Mfs*6 0.25 TCGA-BR-6452-01 11 86106389 86106389 T C CCDC81 Missense_Mutation p.V190A 0.11 tolerated(1) benign(0.009) TCGA-BR-6452-01 11 866596 866596 G A TSPAN4 Missense_Mutation p.C228Y 0.32 tolerated(0.13) probably_damaging(0.962) TCGA-BR-6452-01 11 86665896 86665896 G A FZD4 Nonsense_Mutation p.Q78* 0.19 TCGA-BR-6452-01 11 88242507 88242507 G A GRM5 Silent p.G964G 0.16 TCGA-BR-6452-01 11 88780887 88780887 C T GRM5 Missense_Mutation p.V52I 0.23 tolerated(0.05) possibly_damaging(0.675) TCGA-BR-6452-01 11 8940962 8940962 A G AKIP1 Missense_Mutation p.T190A 0.22 tolerated(0.08) benign(0.159) TCGA-BR-6452-01 11 8941092 8941092 T A AKIP1 3'UTR 0.12 TCGA-BR-6452-01 11 89774694 89774695 TA - TRIM49C Frame_Shift_Del p.I446Lfs*33 0.10 TCGA-BR-6452-01 11 9077338 9077338 A G SCUBE2 Splice_Site p.X403_splice 0.11 TCGA-BR-6452-01 11 92087436 92087436 A G FAT3 Missense_Mutation p.R720G 0.07 possibly_damaging(0.647) TCGA-BR-6452-01 11 92087574 92087574 T A FAT3 Missense_Mutation p.S766T 0.10 possibly_damaging(0.5) TCGA-BR-6452-01 11 9225449 9225449 G - DENND5A Frame_Shift_Del p.P236Lfs*25 0.25 TCGA-BR-6452-01 11 92534472 92534472 A T FAT3 Missense_Mutation p.I2765F 0.11 possibly_damaging(0.616) TCGA-BR-6452-01 11 92568182 92568182 A G FAT3 Missense_Mutation p.K3340E 0.12 benign(0.001) TCGA-BR-6452-01 11 92616316 92616316 G A FAT3 Missense_Mutation p.V4232M 0.09 probably_damaging(0.931) TCGA-BR-6452-01 11 93469312 93469312 A G TAF1D 3'UTR 0.08 TCGA-BR-6452-01 11 93545200 93545200 T C MED17 Silent p.L642L 0.07 TCGA-BR-6452-01 11 94134373 94134373 A G GPR83 Missense_Mutation p.V14A 0.10 tolerated_low_confidence(0.14) benign(0.001) TCGA-BR-6452-01 11 94200987 94200987 G A MRE11A Nonsense_Mutation p.R364* 0.24 TCGA-BR-6452-01 11 94597954 94597956 GGA - AMOTL1 In_Frame_Del p.E731del 0.15 TCGA-BR-6452-01 11 95578262 95578262 A G MTMR2 Missense_Mutation p.V414A 0.08 deleterious(0) probably_damaging(0.909) TCGA-BR-6452-01 11 95724805 95724805 T C MAML2 Missense_Mutation p.Y741C 0.08 unknown(0) TCGA-BR-6452-01 11 9879811 9879811 C A SBF2 Missense_Mutation p.A688S 0.07 tolerated(0.96) benign(0.006) TCGA-BR-6452-01 11 988613 988613 G A AP2A2 Missense_Mutation p.R398H 0.08 tolerated(0.1) benign(0.2) TCGA-BR-6452-01 11 9989942 9989942 G C SBF2 Missense_Mutation p.P516A 0.09 tolerated(0.15) benign(0.017) TCGA-BR-6452-01 12 1003798 1003798 T C WNK1 Silent p.F1860F 0.21 TCGA-BR-6452-01 12 100551023 100551023 C T AC010203.1 3'Flank 0.09 TCGA-BR-6452-01 12 1006677 1006677 G A WNK1 Missense_Mutation p.R2093H 0.11 deleterious(0.02) probably_damaging(0.999) TCGA-BR-6452-01 12 100729611 100729611 A G SCYL2 Missense_Mutation p.N651S 0.08 tolerated(0.96) benign(0) TCGA-BR-6452-01 12 100813785 100813785 G A SLC17A8 Missense_Mutation p.A540T 0.15 tolerated(0.15) benign(0.001) TCGA-BR-6452-01 12 101295596 101295596 A - ANO4 Frame_Shift_Del p.T13Pfs*18 0.18 TCGA-BR-6452-01 12 101336299 101336299 C A ANO4 Missense_Mutation p.Q113K 0.17 tolerated(0.07) benign(0.062) TCGA-BR-6452-01 12 101603516 101603516 G A SLC5A8 Silent p.G37G 0.27 TCGA-BR-6452-01 12 10163385 10163385 A G CLEC12B Silent p.T9T 0.16 TCGA-BR-6452-01 12 101773254 101773254 A G UTP20 Missense_Mutation p.Q2501R 0.10 tolerated(0.43) benign(0) TCGA-BR-6452-01 12 101779776 101779776 A - UTP20 Frame_Shift_Del p.M2747* 0.11 TCGA-BR-6452-01 12 102108316 102108316 C A CHPT1 Silent p.R152R 0.29 TCGA-BR-6452-01 12 102108321 102108321 G A CHPT1 Missense_Mutation p.G154E 0.18 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 12 102151087 102151087 A C GNPTAB Missense_Mutation p.F1113V 0.11 deleterious(0) possibly_damaging(0.589) TCGA-BR-6452-01 12 102158708 102158708 C - GNPTAB Frame_Shift_Del p.E663Kfs*31 0.14 TCGA-BR-6452-01 12 102439888 102439888 C T CCDC53 Missense_Mutation p.D54N 0.11 tolerated(0.47) benign(0.013) TCGA-BR-6452-01 12 10278009 10278009 A G CLEC7A Missense_Mutation p.Y127H 0.11 tolerated(1) benign(0) TCGA-BR-6452-01 12 1038990 1038990 G A RAD52 Silent p.L115L 0.08 TCGA-BR-6452-01 12 104179252 104179252 T A NT5DC3 Missense_Mutation p.D397V 0.20 deleterious(0.02) possibly_damaging(0.859) TCGA-BR-6452-01 12 104476535 104476535 A - HCFC2 Frame_Shift_Del p.N309Ifs*32 0.24 TCGA-BR-6452-01 12 104682799 104682799 G A TXNRD1 Missense_Mutation p.G132D 0.21 tolerated(0.06) benign(0.009) TCGA-BR-6452-01 12 105151226 105151226 T A CHST11 Missense_Mutation p.V235D 0.09 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 12 105199107 105199107 G A SLC41A2 Silent p.T515T 0.08 TCGA-BR-6452-01 12 10561587 10561587 C T KLRC4 Silent p.K70K 0.07 TCGA-BR-6452-01 12 106632782 106632782 G A CKAP4 3'UTR 0.11 TCGA-BR-6452-01 12 106632882 106632882 C T CKAP4 Missense_Mutation p.A577T 0.08 tolerated(0.34) possibly_damaging(0.47) TCGA-BR-6452-01 12 106632988 106632988 G T CKAP4 Silent p.A541A 0.07 TCGA-BR-6452-01 12 106633214 106633214 T A CKAP4 Missense_Mutation p.D466V 0.13 tolerated(0.17) benign(0.405) TCGA-BR-6452-01 12 106729566 106729566 C G TCP11L2 Missense_Mutation p.L308V 0.27 deleterious(0) probably_damaging(0.934) TCGA-BR-6452-01 12 106821127 106821127 T C POLR3B Silent p.A418A 0.10 TCGA-BR-6452-01 12 107103144 107103144 G T RFX4 Silent p.L299L 0.20 TCGA-BR-6452-01 12 107415864 107415864 T C CRY1 Missense_Mutation p.K89E 0.08 tolerated(0.1) benign(0.051) TCGA-BR-6452-01 12 108011113 108011113 G A BTBD11 Missense_Mutation p.G711S 0.14 deleterious(0.03) probably_damaging(1) TCGA-BR-6452-01 12 108912565 108912565 A G FICD Silent p.T230T 0.10 TCGA-BR-6452-01 12 109046095 109046095 A G CORO1C Silent p.G318G 0.05 TCGA-BR-6452-01 12 109519161 109519161 T C USP30 Missense_Mutation p.F248S 0.08 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 12 109604775 109604775 G - ACACB Frame_Shift_Del p.D257Ifs*17 0.27 TCGA-BR-6452-01 12 109625968 109625968 G A ACACB Splice_Site p.X715_splice 0.17 TCGA-BR-6452-01 12 109845668 109845668 C T MYO1H Nonsense_Mutation p.R353* 0.23 TCGA-BR-6452-01 12 109945425 109945425 G A UBE3B Missense_Mutation p.G503R 0.25 deleterious(0) probably_damaging(0.994) TCGA-BR-6452-01 12 109994818 109994818 C T MMAB 3'UTR 0.19 TCGA-BR-6452-01 12 110019240 110019240 C - MVK Frame_Shift_Del p.A141Rfs*18 0.12 TCGA-BR-6452-01 12 11034993 11034993 C T PRH1 Silent p.Q114Q 0.09 TCGA-BR-6452-01 12 110427530 110427530 A G GIT2 Silent p.S88S 0.08 TCGA-BR-6452-01 12 110456152 110456152 C T ANKRD13A Missense_Mutation p.P135S 0.18 deleterious(0) probably_damaging(0.998) TCGA-BR-6452-01 12 11061110 11061110 T C TAS2R13 Missense_Mutation p.Y263C 0.09 tolerated(0.17) possibly_damaging(0.704) TCGA-BR-6452-01 12 110977634 110977634 T - PPTC7 Frame_Shift_Del p.K240Sfs*2 0.23 TCGA-BR-6452-01 12 111089064 111089064 G A HVCN1 Silent p.L201L 0.12 TCGA-BR-6452-01 12 111160421 111160423 AAG - PPP1CC In_Frame_Del p.L201del 0.36 TCGA-BR-6452-01 12 111317857 111317857 G A CCDC63 Missense_Mutation p.A213T 0.14 deleterious(0) probably_damaging(0.968) TCGA-BR-6452-01 12 112707608 112707608 C T HECTD4 Missense_Mutation p.D597N 0.08 benign(0.117) TCGA-BR-6452-01 12 112708191 112708191 A T HECTD4 Missense_Mutation p.L528H 0.09 probably_damaging(0.999) TCGA-BR-6452-01 12 113307841 113307841 G T RPH3A Missense_Mutation p.A265S 0.18 tolerated(0.37) benign(0.063) TCGA-BR-6452-01 12 113379524 113379524 G A OAS3 Nonsense_Mutation p.W109* 0.11 TCGA-BR-6452-01 12 113496081 113496081 G A DTX1 Nonsense_Mutation p.W28* 0.12 TCGA-BR-6452-01 12 113599747 113599749 TCT - DDX54 In_Frame_Del p.K750del 0.22 TCGA-BR-6452-01 12 113629143 113629143 G A RITA1 Missense_Mutation p.D111N 0.10 deleterious(0) probably_damaging(0.978) TCGA-BR-6452-01 12 113633490 113633490 A G IQCD Missense_Mutation p.Y312H 0.11 deleterious(0) probably_damaging(0.998) TCGA-BR-6452-01 12 114377843 114377843 C A RBM19 Missense_Mutation p.E620D 0.09 tolerated(0.1) benign(0.004) TCGA-BR-6452-01 12 114397977 114397977 A G RBM19 Missense_Mutation p.F76L 0.10 tolerated(0.83) benign(0.001) TCGA-BR-6452-01 12 115121017 115121017 G - TBX3 5'UTR 0.14 TCGA-BR-6452-01 12 117160913 117160913 C T C12orf49 Missense_Mutation p.R76H 0.17 deleterious(0) probably_damaging(0.988) TCGA-BR-6452-01 12 117962760 117962760 C T KSR2 Missense_Mutation p.A706T 0.13 deleterious(0.02) possibly_damaging(0.826) TCGA-BR-6452-01 12 118599655 118599655 G A TAOK3 Nonsense_Mutation p.R693* 0.13 TCGA-BR-6452-01 12 119419782 119419782 T A SRRM4 Missense_Mutation p.I32N 0.19 deleterious_low_confidence(0) unknown(0) TCGA-BR-6452-01 12 119568536 119568536 G A SRRM4 Missense_Mutation p.R223H 0.21 tolerated_low_confidence(0.06) benign(0.002) TCGA-BR-6452-01 12 119631646 119631646 G A HSPB8 Missense_Mutation p.E192K 0.09 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-BR-6452-01 12 119909923 119909923 C T CCDC60 Missense_Mutation p.P99S 0.08 deleterious(0.01) probably_damaging(1) TCGA-BR-6452-01 12 119968733 119968734 - A CCDC60 Frame_Shift_Ins p.I475Dfs*37 0.11 TCGA-BR-6452-01 12 12022490 12022490 G A ETV6 Missense_Mutation p.R199Q 0.08 tolerated(0.19) benign(0.135) TCGA-BR-6452-01 12 120295414 120295414 A G CIT Silent p.A109A 0.08 TCGA-BR-6452-01 12 120591161 120591161 C T GCN1L1 Silent p.A1306A 0.19 TCGA-BR-6452-01 12 120637168 120637168 T C RPLP0 Missense_Mutation p.T59A 0.08 deleterious(0.04) benign(0.183) TCGA-BR-6452-01 12 120783402 120783402 A G MSI1 Missense_Mutation p.Y361H 0.08 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BR-6452-01 12 121206174 121206174 G A SPPL3 Missense_Mutation p.R243C 0.24 deleterious(0.03) probably_damaging(0.91) TCGA-BR-6452-01 12 121660770 121660770 G A P2RX4 Missense_Mutation p.V166I 0.18 tolerated(0.24) benign(0.005) TCGA-BR-6452-01 12 121880091 121880092 - G KDM2B Frame_Shift_Ins p.P1052Afs*2 0.26 TCGA-BR-6452-01 12 122016814 122016814 T C KDM2B Missense_Mutation p.D55G 0.11 tolerated(1) benign(0.012) TCGA-BR-6452-01 12 122213555 122213555 G A TMEM120B Missense_Mutation p.G316D 0.07 deleterious(0) probably_damaging(0.996) TCGA-BR-6452-01 12 122217484 122217484 G A RHOF Missense_Mutation p.R186W 0.18 deleterious(0) probably_damaging(0.984) TCGA-BR-6452-01 12 122623419 122623419 T A MLXIP Missense_Mutation p.D814E 0.17 deleterious(0) benign(0.101) TCGA-BR-6452-01 12 122625562 122625562 T C MLXIP Missense_Mutation p.L857P 0.23 tolerated(0.06) benign(0.059) TCGA-BR-6452-01 12 122657248 122657248 G A IL31 Missense_Mutation p.T69M 0.23 tolerated(0.11) benign(0.075) TCGA-BR-6452-01 12 122720408 122720408 C T VPS33A Silent p.P455P 0.12 TCGA-BR-6452-01 12 123214131 123214131 G A HCAR1 Silent p.C252C 0.07 TCGA-BR-6452-01 12 123265820 123265820 G T CCDC62 Missense_Mutation p.Q113H 0.21 deleterious(0) probably_damaging(0.998) TCGA-BR-6452-01 12 123285971 123285971 A G CCDC62 Silent p.T426T 0.13 TCGA-BR-6452-01 12 123424729 123424729 G - ABCB9 Frame_Shift_Del p.L558Wfs*24 0.20 TCGA-BR-6452-01 12 123915133 123915133 A G RILPL2 Missense_Mutation p.L138P 0.08 deleterious(0) probably_damaging(0.997) TCGA-BR-6452-01 12 124069277 124069277 T C TMED2 Missense_Mutation p.C32R 0.08 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 12 124228803 124228803 C T ATP6V0A2 Silent p.F415F 0.20 TCGA-BR-6452-01 12 124330561 124330561 T C DNAH10 Missense_Mutation p.F1774L 0.06 probably_damaging(0.993) TCGA-BR-6452-01 12 124832728 124832728 C T NCOR2 Missense_Mutation p.S1326N 0.09 benign(0.343) TCGA-BR-6452-01 12 124835152 124835152 G T NCOR2 Silent p.G1275G 0.07 TCGA-BR-6452-01 12 124882718 124882718 T G NCOR2 Missense_Mutation p.E608A 0.07 unknown(0) TCGA-BR-6452-01 12 124885063 124885063 C A NCOR2 Missense_Mutation p.Q599H 0.09 unknown(0) TCGA-BR-6452-01 12 125267351 125267352 - T SCARB1 Frame_Shift_Ins p.C470Mfs*7 0.15 TCGA-BR-6452-01 12 12873978 12873979 AT - CDKN1B 3'UTR 0.22 TCGA-BR-6452-01 12 130185180 130185180 G A TMEM132D Missense_Mutation p.P48L 0.10 deleterious(0) probably_damaging(0.945) TCGA-BR-6452-01 12 130648123 130648123 G A FZD10 Silent p.T212T 0.14 TCGA-BR-6452-01 12 130897259 130897259 T A RIMBP2 Missense_Mutation p.N909I 0.08 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 12 13095228 13095228 T C GPRC5D Silent p.A310A 0.08 TCGA-BR-6452-01 12 131466442 131466442 T - GPR133 Frame_Shift_Del p.F110Sfs*45 0.15 TCGA-BR-6452-01 12 131569156 131569156 G A GPR133 Missense_Mutation p.R540H 0.24 tolerated(0.6) benign(0.005) TCGA-BR-6452-01 12 132249139 132249139 C T SFSWAP Missense_Mutation p.A620V 0.09 tolerated(0.23) benign(0.047) TCGA-BR-6452-01 12 132281751 132281751 C T SFSWAP Missense_Mutation p.R907W 0.14 deleterious_low_confidence(0.01) unknown(0) TCGA-BR-6452-01 12 132508396 132508396 C T EP400 Missense_Mutation p.P1589S 0.21 unknown(0) TCGA-BR-6452-01 12 132534928 132534928 C T EP400 Missense_Mutation p.H2421Y 0.22 unknown(0) TCGA-BR-6452-01 12 133214612 133214612 T C POLE Missense_Mutation p.Y1889C 0.10 deleterious(0) probably_damaging(0.986) TCGA-BR-6452-01 12 133234500 133234500 C T POLE Missense_Mutation p.R1111Q 0.23 deleterious(0.04) probably_damaging(0.984) TCGA-BR-6452-01 12 133245074 133245074 T G POLE Missense_Mutation p.S681R 0.09 deleterious(0.01) probably_damaging(0.91) TCGA-BR-6452-01 12 133249803 133249803 C T POLE Missense_Mutation p.V474I 0.19 tolerated(0.06) possibly_damaging(0.84) TCGA-BR-6452-01 12 133324563 133324563 T C ANKLE2 Missense_Mutation p.N362S 0.10 deleterious(0) benign(0.341) TCGA-BR-6452-01 12 133350896 133350896 G A GOLGA3 Missense_Mutation p.P1385L 0.23 tolerated(0.37) benign(0.004) TCGA-BR-6452-01 12 133363022 133363022 C T GOLGA3 Missense_Mutation p.R1009H 0.21 deleterious(0) probably_damaging(0.95) TCGA-BR-6452-01 12 133433166 133433166 T C CHFR Missense_Mutation p.I385V 0.09 tolerated(0.1) benign(0.2) TCGA-BR-6452-01 12 133433184 133433184 T C CHFR Missense_Mutation p.M379V 0.10 deleterious(0) benign(0.297) TCGA-BR-6452-01 12 13716607 13716607 C T GRIN2B Missense_Mutation p.V1189M 0.15 tolerated_low_confidence(0.16) possibly_damaging(0.493) TCGA-BR-6452-01 12 13768096 13768096 C T GRIN2B Missense_Mutation p.V536I 0.12 deleterious(0) possibly_damaging(0.524) TCGA-BR-6452-01 12 14649274 14649274 T C ATF7IP Silent p.H1130H 0.13 TCGA-BR-6452-01 12 14804958 14804958 T A GUCY2C Missense_Mutation p.I514F 0.10 deleterious(0.02) probably_damaging(0.996) TCGA-BR-6452-01 12 14813967 14813967 T C GUCY2C Missense_Mutation p.T438A 0.09 tolerated(0.16) benign(0.008) TCGA-BR-6452-01 12 14822720 14822720 A G GUCY2C Silent p.P406P 0.08 TCGA-BR-6452-01 12 14849242 14849242 A G GUCY2C Silent p.F47F 0.14 TCGA-BR-6452-01 12 15652375 15652375 G T PTPRO Splice_Site p.X170_splice 0.09 TCGA-BR-6452-01 12 15679131 15679131 A C PTPRO Missense_Mutation p.N700T 0.08 deleterious(0.04) probably_damaging(0.974) TCGA-BR-6452-01 12 15803899 15803899 G A EPS8 Missense_Mutation p.P431L 0.07 tolerated(0.35) benign(0.084) TCGA-BR-6452-01 12 15811494 15811494 T C EPS8 Silent p.K321K 0.07 TCGA-BR-6452-01 12 16035702 16035702 G A STRAP Missense_Mutation p.A21T 0.10 tolerated(0.32) probably_damaging(0.915) TCGA-BR-6452-01 12 19593269 19593269 T C AEBP2 Silent p.D212D 0.14 TCGA-BR-6452-01 12 19615467 19615467 T C AEBP2 Missense_Mutation p.V232A 0.16 tolerated_low_confidence(0.08) benign(0.101) TCGA-BR-6452-01 12 19671029 19671029 C T AEBP2 Missense_Mutation p.P497L 0.25 deleterious_low_confidence(0.01) benign(0.015) TCGA-BR-6452-01 12 20522723 20522723 G - PDE3A Frame_Shift_Del p.E171Kfs*36 0.29 TCGA-BR-6452-01 12 2055377 2055377 T C DCP1B Missense_Mutation p.M617V 0.10 tolerated_low_confidence(0.36) benign(0.007) TCGA-BR-6452-01 12 20803459 20803459 T C PDE3A Silent p.D950D 0.11 TCGA-BR-6452-01 12 20890197 20890197 A - SLCO1C1 Frame_Shift_Del p.N515Ifs*23 0.11 TCGA-BR-6452-01 12 2102471 2102471 A T DCP1B Missense_Mutation p.F93Y 0.09 deleterious(0.01) possibly_damaging(0.824) TCGA-BR-6452-01 12 21327601 21327601 T A SLCO1B1 Missense_Mutation p.I106N 0.09 deleterious(0.02) possibly_damaging(0.477) TCGA-BR-6452-01 12 21422412 21422412 A G SLCO1A2 3'UTR 0.15 TCGA-BR-6452-01 12 21636379 21636379 T C RECQL Missense_Mutation p.R211G 0.09 tolerated(1) benign(0) TCGA-BR-6452-01 12 21981972 21981972 G A ABCC9 Missense_Mutation p.R1197C 0.07 deleterious(0) possibly_damaging(0.663) TCGA-BR-6452-01 12 22069897 22069897 C T ABCC9 Missense_Mutation p.V183M 0.10 tolerated(0.06) benign(0.197) TCGA-BR-6452-01 12 22486986 22486986 C - ST8SIA1 Frame_Shift_Del p.V61Cfs*34 0.10 TCGA-BR-6452-01 12 23893932 23893932 C A SOX5 Missense_Mutation p.G204C 0.15 tolerated(0.19) possibly_damaging(0.868) TCGA-BR-6452-01 12 247988 247988 G A IQSEC3 Missense_Mutation p.D487N 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-BR-6452-01 12 25702341 25702341 T C IFLTD1 Missense_Mutation p.S77G 0.11 deleterious(0.04) probably_damaging(0.98) TCGA-BR-6452-01 12 26571996 26571996 A G ITPR2 Missense_Mutation p.F2366L 0.23 deleterious(0.04) possibly_damaging(0.889) TCGA-BR-6452-01 12 26709200 26709200 C T ITPR2 Missense_Mutation p.D1644N 0.12 tolerated(0.15) benign(0.004) TCGA-BR-6452-01 12 27087529 27087529 A G ASUN Missense_Mutation p.V87A 0.08 tolerated(0.14) benign(0.102) TCGA-BR-6452-01 12 27117736 27117736 G A FGFR1OP2 3'UTR 0.19 TCGA-BR-6452-01 12 27143484 27143484 A G TM7SF3 Missense_Mutation p.V256A 0.07 deleterious(0) possibly_damaging(0.64) TCGA-BR-6452-01 12 27179427 27179427 G T MED21 Missense_Mutation p.Q39H 0.11 tolerated(0.08) benign(0.009) TCGA-BR-6452-01 12 2719827 2719827 G A CACNA1C Missense_Mutation p.V1247I 0.11 tolerated(0.17) benign(0.004) TCGA-BR-6452-01 12 29592296 29592296 T C OVCH1 Missense_Mutation p.N1077D 0.12 tolerated_low_confidence(0.29) possibly_damaging(0.485) TCGA-BR-6452-01 12 29665046 29665046 C G TMTC1 Missense_Mutation p.R813T 0.10 deleterious(0.04) benign(0.017) TCGA-BR-6452-01 12 30805933 30805933 A G IPO8 Missense_Mutation p.V681A 0.12 tolerated(0.18) benign(0.003) TCGA-BR-6452-01 12 30822191 30822192 - A IPO8 Frame_Shift_Ins p.S357Ffs*6 0.12 TCGA-BR-6452-01 12 30887988 30887988 A G CAPRIN2 Silent p.N241N 0.08 TCGA-BR-6452-01 12 32993959 32993959 T C PKP2 Intron 0.10 TCGA-BR-6452-01 12 33592387 33592387 C T SYT10 Missense_Mutation p.C24Y 0.20 deleterious(0) probably_damaging(0.991) TCGA-BR-6452-01 12 3388233 3388233 G A TSPAN9 Splice_Site p.X110_splice 0.10 TCGA-BR-6452-01 12 34178860 34178860 T - ALG10 Frame_Shift_Del p.F146Lfs*20 0.08 TCGA-BR-6452-01 12 39733972 39733972 T - KIF21A Frame_Shift_Del p.T769Qfs*5 0.32 TCGA-BR-6452-01 12 39745580 39745580 T - KIF21A Frame_Shift_Del p.R558Gfs*42 0.16 TCGA-BR-6452-01 12 40677882 40677882 C A LRRK2 Missense_Mutation p.S816Y 0.09 deleterious(0.01) possibly_damaging(0.724) TCGA-BR-6452-01 12 40688654 40688654 T - LRRK2 Frame_Shift_Del p.F940Lfs*7 0.23 TCGA-BR-6452-01 12 41374737 41374737 A G CNTN1 Missense_Mutation p.R611G 0.06 tolerated(0.05) probably_damaging(0.982) TCGA-BR-6452-01 12 41961604 41961604 A G PDZRN4 Missense_Mutation p.E496G 0.09 deleterious(0) benign(0.298) TCGA-BR-6452-01 12 42512919 42512919 A G GXYLT1 Silent p.C123C 0.09 TCGA-BR-6452-01 12 432249 432249 T - KDM5A Frame_Shift_Del p.D759Ifs*2 0.10 TCGA-BR-6452-01 12 44338087 44338087 T C TMEM117 Missense_Mutation p.F118L 0.12 tolerated(0.57) benign(0.001) TCGA-BR-6452-01 12 4599042 4599042 A T C12orf4 Nonsense_Mutation p.Y530* 0.09 TCGA-BR-6452-01 12 46231159 46231160 - A ARID2 Frame_Shift_Ins p.C362Mfs*7 0.10 TCGA-BR-6452-01 12 46231180 46231180 A T ARID2 Missense_Mutation p.D367V 0.25 deleterious(0) probably_damaging(0.998) TCGA-BR-6452-01 12 46245033 46245033 C T ARID2 Nonsense_Mutation p.Q1043* 0.08 TCGA-BR-6452-01 12 46320326 46320326 T C SCAF11 Missense_Mutation p.E1053G 0.08 tolerated(0.09) benign(0.065) TCGA-BR-6452-01 12 46321589 46321589 A G SCAF11 Missense_Mutation p.V632A 0.09 tolerated(0.37) benign(0.004) TCGA-BR-6452-01 12 4654960 4654960 T A RAD51AP1 Silent p.G74G 0.06 TCGA-BR-6452-01 12 46756850 46756850 G A SLC38A2 Missense_Mutation p.A378V 0.10 deleterious(0) probably_damaging(0.95) TCGA-BR-6452-01 12 46765138 46765138 T C SLC38A2 5'UTR 0.13 TCGA-BR-6452-01 12 47172470 47172470 C T SLC38A4 Missense_Mutation p.M269I 0.09 tolerated(0.34) benign(0) TCGA-BR-6452-01 12 4735822 4735822 G A AKAP3 Missense_Mutation p.P749L 0.08 tolerated(0.56) benign(0.039) TCGA-BR-6452-01 12 48174350 48174350 T C SLC48A1 3'UTR 0.37 TCGA-BR-6452-01 12 48367266 48367266 A G COL2A1 Missense_Mutation p.I1463T 0.11 unknown(0) TCGA-BR-6452-01 12 48369119 48369119 G A COL2A1 Silent p.C1289C 0.09 TCGA-BR-6452-01 12 48442746 48442746 A G SENP1 Missense_Mutation p.V526A 0.09 deleterious(0) probably_damaging(0.993) TCGA-BR-6452-01 12 48535570 48535570 A C PFKM Missense_Mutation p.K558T 0.19 tolerated(0.41) benign(0.006) TCGA-BR-6452-01 12 48577891 48577891 C T C12orf68 5'UTR 0.14 TCGA-BR-6452-01 12 4919490 4919490 G A KCNA6 Missense_Mutation p.A95T 0.18 deleterious(0) possibly_damaging(0.898) TCGA-BR-6452-01 12 49224275 49224275 G A DDX23 Missense_Mutation p.R814W 0.25 deleterious(0) possibly_damaging(0.886) TCGA-BR-6452-01 12 49315835 49315835 C T FKBP11 Missense_Mutation p.A180T 0.11 deleterious(0) possibly_damaging(0.798) TCGA-BR-6452-01 12 49420243 49420243 A G KMT2D Missense_Mutation p.I5169T 0.10 unknown(0) TCGA-BR-6452-01 12 49420661 49420661 G A KMT2D Missense_Mutation p.R5030C 0.16 unknown(0) TCGA-BR-6452-01 12 49488108 49488108 G A DHH Missense_Mutation p.A63V 0.29 tolerated(0.45) benign(0.401) TCGA-BR-6452-01 12 49579012 49579012 G A TUBA1A Silent p.S379S 0.08 TCGA-BR-6452-01 12 49726989 49726989 C T C1QL4 Missense_Mutation p.A189T 0.09 deleterious(0.03) probably_damaging(0.993) TCGA-BR-6452-01 12 49937785 49937785 C T KCNH3 Missense_Mutation p.T304I 0.11 deleterious(0.01) probably_damaging(0.936) TCGA-BR-6452-01 12 49953259 49953259 G A MCRS1 Missense_Mutation p.R368W 0.10 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 12 50036250 50036250 G A FMNL3 3'UTR 0.16 TCGA-BR-6452-01 12 50036926 50036926 C A FMNL3 3'UTR 0.19 TCGA-BR-6452-01 12 50190678 50190678 G C NCKAP5L Missense_Mutation p.A322G 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.626) TCGA-BR-6452-01 12 5020846 5020846 G A KCNA1 Missense_Mutation p.R101H 0.10 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 12 5021176 5021176 T C KCNA1 Missense_Mutation p.I211T 0.19 tolerated(0.67) benign(0.001) TCGA-BR-6452-01 12 50291301 50291301 C T FAIM2 Splice_Site p.X127_splice 0.15 TCGA-BR-6452-01 12 50473697 50473699 AGA - ASIC1 In_Frame_Del p.K356del 0.09 TCGA-BR-6452-01 12 50475044 50475044 T C ASIC1 Missense_Mutation p.V506A 0.15 deleterious(0.02) possibly_damaging(0.702) TCGA-BR-6452-01 12 51319022 51319022 C T METTL7A Silent p.G67G 0.11 TCGA-BR-6452-01 12 5154130 5154130 C T KCNA5 Missense_Mutation p.P273S 0.16 deleterious(0) probably_damaging(0.998) TCGA-BR-6452-01 12 5154984 5154984 C T KCNA5 Silent p.S557S 0.21 TCGA-BR-6452-01 12 52407946 52407946 T C GRASP Missense_Mutation p.Y215H 0.20 deleterious(0) probably_damaging(0.94) TCGA-BR-6452-01 12 52714895 52714895 C - KRT83 Frame_Shift_Del p.C76Afs*25 0.10 TCGA-BR-6452-01 12 52841348 52841348 G A KRT6B Silent p.G478G 0.30 TCGA-BR-6452-01 12 52865209 52865209 T C KRT6C Missense_Mutation p.D303G 0.10 deleterious(0) benign(0.224) TCGA-BR-6452-01 12 52865984 52865984 C T KRT6C Silent p.R207R 0.12 TCGA-BR-6452-01 12 52884922 52884922 C T KRT6A Missense_Mutation p.E264K 0.09 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 12 53040608 53040608 T C KRT2 Missense_Mutation p.D462G 0.07 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 12 53086570 53086570 A C KRT77 Missense_Mutation p.L392R 0.13 deleterious(0) probably_damaging(0.991) TCGA-BR-6452-01 12 53227765 53227765 C T KRT79 Missense_Mutation p.A94T 0.16 deleterious(0.04) benign(0.154) TCGA-BR-6452-01 12 53817692 53817693 - T AMHR2 5'UTR 0.08 TCGA-BR-6452-01 12 53879982 53879982 C T MAP3K12 Missense_Mutation p.A227T 0.13 tolerated(0.06) benign(0.354) TCGA-BR-6452-01 12 53880958 53880958 G - MAP3K12 Frame_Shift_Del p.P73Lfs*62 0.16 TCGA-BR-6452-01 12 53899914 53899914 C T TARBP2 Silent p.I361I 0.28 TCGA-BR-6452-01 12 53901178 53901178 C A NPFF Missense_Mutation p.Q27H 0.11 tolerated(0.67) benign(0.24) TCGA-BR-6452-01 12 54339064 54339064 T A HOXC13 3'UTR 0.11 TCGA-BR-6452-01 12 54797044 54797044 G A ITGA5 Missense_Mutation p.P614L 0.06 tolerated(0.41) possibly_damaging(0.734) TCGA-BR-6452-01 12 54922129 54922129 A T NCKAP1L Missense_Mutation p.N825I 0.10 tolerated(0.25) benign(0.016) TCGA-BR-6452-01 12 54968964 54968964 C T PDE1B Missense_Mutation p.R383C 0.18 deleterious(0) probably_damaging(0.957) TCGA-BR-6452-01 12 54974788 54974788 T C PPP1R1A Silent p.E150E 0.06 TCGA-BR-6452-01 12 55641092 55641092 A G OR6C74 Silent p.V7V 0.09 TCGA-BR-6452-01 12 55714599 55714599 A C OR6C1 Silent p.T72T 0.11 TCGA-BR-6452-01 12 55715169 55715169 A G OR6C1 Silent p.A262A 0.07 TCGA-BR-6452-01 12 55715233 55715233 A G OR6C1 Missense_Mutation p.N284D 0.20 deleterious_low_confidence(0) possibly_damaging(0.844) TCGA-BR-6452-01 12 56112932 56112932 G T BLOC1S1 Missense_Mutation p.Q92H 0.11 tolerated(0.27) benign(0.317) TCGA-BR-6452-01 12 56115638 56115638 T A RDH5 Missense_Mutation p.I159N 0.11 deleterious(0) probably_damaging(0.923) TCGA-BR-6452-01 12 56384499 56384499 G A RAB5B Missense_Mutation p.E117K 0.10 deleterious(0.02) probably_damaging(1) TCGA-BR-6452-01 12 56478899 56478899 G A ERBB3 Missense_Mutation p.V119I 0.21 tolerated(0.52) benign(0.421) TCGA-BR-6452-01 12 56492210 56492210 A G ERBB3 Intron 0.12 TCGA-BR-6452-01 12 56493660 56493660 C A ERBB3 Silent p.P992P 0.15 TCGA-BR-6452-01 12 56526307 56526307 C T ESYT1 Missense_Mutation p.R363C 0.12 deleterious(0) probably_damaging(0.996) TCGA-BR-6452-01 12 56530569 56530569 G A ESYT1 Silent p.T568T 0.09 TCGA-BR-6452-01 12 56552112 56552112 T C MYL6 5'UTR 0.19 TCGA-BR-6452-01 12 56625260 56625260 G T SLC39A5 Missense_Mutation p.G68C 0.10 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 12 56630717 56630717 G A SLC39A5 Missense_Mutation p.A404T 0.05 deleterious(0.01) possibly_damaging(0.908) TCGA-BR-6452-01 12 56661678 56661678 C - COQ10A Frame_Shift_Del p.F80Sfs*51 0.11 TCGA-BR-6452-01 12 56719213 56719213 T C PAN2 Missense_Mutation p.D462G 0.08 tolerated(0.52) benign(0.002) TCGA-BR-6452-01 12 56811707 56811707 A G TIMELESS Silent p.D1180D 0.10 TCGA-BR-6452-01 12 56822332 56822332 C T TIMELESS Splice_Site p.X470_splice 0.29 TCGA-BR-6452-01 12 57113163 57113163 G A NACA Intron 0.25 TCGA-BR-6452-01 12 5744509 5744509 G A ANO2 Missense_Mutation p.A542V 0.19 tolerated(0.17) benign(0.067) TCGA-BR-6452-01 12 57466637 57466637 G A TMEM194A Silent p.A62A 0.18 TCGA-BR-6452-01 12 57550055 57550055 G A LRP1 Missense_Mutation p.R469H 0.20 probably_damaging(0.983) TCGA-BR-6452-01 12 57553773 57553773 T C LRP1 Missense_Mutation p.V655A 0.15 probably_damaging(0.946) TCGA-BR-6452-01 12 57561277 57561277 T C LRP1 Missense_Mutation p.C989R 0.08 probably_damaging(1) TCGA-BR-6452-01 12 57573210 57573210 G A LRP1 Missense_Mutation p.D1613N 0.13 probably_damaging(0.998) TCGA-BR-6452-01 12 57619127 57619127 C A NXPH4 Missense_Mutation p.P175H 0.18 deleterious(0) benign(0.319) TCGA-BR-6452-01 12 57638384 57638384 G A STAC3 Nonsense_Mutation p.Q248* 0.08 TCGA-BR-6452-01 12 57638744 57638744 G A STAC3 Silent p.N225N 0.06 TCGA-BR-6452-01 12 57865375 57865375 G A GLI1 Missense_Mutation p.G951D 0.19 tolerated_low_confidence(0.05) probably_damaging(1) TCGA-BR-6452-01 12 57908808 57908808 C T MARS Missense_Mutation p.P724L 0.14 deleterious(0) benign(0.215) TCGA-BR-6452-01 12 57963431 57963431 C T KIF5A Missense_Mutation p.A361V 0.14 tolerated(0.15) benign(0.045) TCGA-BR-6452-01 12 57994595 57994595 T C PIP4K2C Missense_Mutation p.F272S 0.09 deleterious(0) possibly_damaging(0.733) TCGA-BR-6452-01 12 58109590 58109590 C T OS9 Silent p.R209R 0.09 TCGA-BR-6452-01 12 58111653 58111654 - T OS9 Frame_Shift_Ins p.Q351Sfs*41 0.08 TCGA-BR-6452-01 12 58335598 58335598 G A XRCC6BP1 Silent p.Q38Q 0.16 TCGA-BR-6452-01 12 6091141 6091143 CTC - VWF In_Frame_Del p.E2366del 0.12 TCGA-BR-6452-01 12 62949898 62949898 C T MON2 Missense_Mutation p.A1112V 0.17 deleterious(0) probably_damaging(0.991) TCGA-BR-6452-01 12 6438737 6438737 C T TNFRSF1A Missense_Mutation p.R370H 0.26 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 12 64746772 64746772 A G C12orf56 Missense_Mutation p.I106T 0.11 tolerated(1) benign(0.002) TCGA-BR-6452-01 12 6574081 6574081 A G VAMP1 Silent p.C105C 0.08 TCGA-BR-6452-01 12 6664471 6664471 T C IFFO1 Missense_Mutation p.Y242C 0.08 deleterious(0) probably_damaging(0.987) TCGA-BR-6452-01 12 6692213 6692213 T C CHD4 Missense_Mutation p.D1376G 0.11 deleterious(0.01) probably_damaging(0.945) TCGA-BR-6452-01 12 6696652 6696652 G A CHD4 Silent p.D1259D 0.07 TCGA-BR-6452-01 12 6711546 6711546 T - CHD4 Frame_Shift_Del p.K73Rfs*129 0.22 TCGA-BR-6452-01 12 68051142 68051142 C - DYRK2 Frame_Shift_Del p.M154* 0.19 TCGA-BR-6452-01 12 68642501 68642501 A G IL22 3'UTR 0.11 TCGA-BR-6452-01 12 68645294 68645294 T - IL22 Frame_Shift_Del p.K154Sfs*21 0.13 TCGA-BR-6452-01 12 69202995 69202995 T C MDM2 Missense_Mutation p.C8R 0.08 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-BR-6452-01 12 69233240 69233240 A - MDM2 Frame_Shift_Del p.T371Lfs*2 0.10 TCGA-BR-6452-01 12 6928489 6928489 C A CD4 Silent p.P457P 0.07 TCGA-BR-6452-01 12 69652831 69652831 C T CPSF6 Nonsense_Mutation p.R386* 0.29 TCGA-BR-6452-01 12 69742245 69742245 G T LYZ Missense_Mutation p.K19N 0.10 deleterious(0.01) possibly_damaging(0.665) TCGA-BR-6452-01 12 69968696 69968696 T C FRS2 Silent p.S496S 0.08 TCGA-BR-6452-01 12 7047957 7047957 A G ATN1 Missense_Mutation p.D944G 0.10 possibly_damaging(0.908) TCGA-BR-6452-01 12 7079581 7079581 G A PHB2 Silent p.T42T 0.24 TCGA-BR-6452-01 12 71050594 71050594 T A PTPRR Silent p.A590A 0.08 TCGA-BR-6452-01 12 72024378 72024378 A C ZFC3H1 Splice_Site p.X1242_splice 0.10 TCGA-BR-6452-01 12 72038781 72038781 T - ZFC3H1 Frame_Shift_Del p.K385Nfs*9 0.14 TCGA-BR-6452-01 12 72290554 72290554 A - TBC1D15 Frame_Shift_Del p.T380Lfs*7 0.15 TCGA-BR-6452-01 12 72667178 72667178 G T TRHDE Missense_Mutation p.G207V 0.10 tolerated(0.24) benign(0.075) TCGA-BR-6452-01 12 7289485 7289485 C T CLSTN3 Missense_Mutation p.A330V 0.22 tolerated(0.28) benign(0.016) TCGA-BR-6452-01 12 7295559 7295559 C T CLSTN3 Silent p.C545C 0.11 TCGA-BR-6452-01 12 7651537 7651537 G T CD163 Silent p.L235L 0.07 TCGA-BR-6452-01 12 7653746 7653746 A G CD163 Missense_Mutation p.V149A 0.09 deleterious(0.02) possibly_damaging(0.816) TCGA-BR-6452-01 12 76772266 76772266 A T OSBPL8 Missense_Mutation p.D565E 0.05 tolerated(0.36) benign(0.057) TCGA-BR-6452-01 12 77259935 77259935 G C CSRP2 Missense_Mutation p.L36V 0.08 tolerated(0.33) benign(0.043) TCGA-BR-6452-01 12 77449736 77449736 G T E2F7 Missense_Mutation p.L90I 0.09 deleterious(0) probably_damaging(0.997) TCGA-BR-6452-01 12 7805322 7805322 G A APOBEC1 Nonsense_Mutation p.R52* 0.10 TCGA-BR-6452-01 12 78400806 78400806 A - NAV3 Frame_Shift_Del p.K498Rfs*8 0.21 TCGA-BR-6452-01 12 78400965 78400965 A G NAV3 Silent p.K549K 0.10 TCGA-BR-6452-01 12 78516145 78516145 G A NAV3 Missense_Mutation p.G1392D 0.09 tolerated(0.16) benign(0.283) TCGA-BR-6452-01 12 78570943 78570943 C T NAV3 Missense_Mutation p.A1716V 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-BR-6452-01 12 7882163 7882163 C A CLEC4C 3'UTR 0.19 TCGA-BR-6452-01 12 79693277 79693277 T - SYT1 Frame_Shift_Del p.F253Lfs*4 0.12 TCGA-BR-6452-01 12 79813047 79813047 A G SYT1 Intron 0.14 TCGA-BR-6452-01 12 80750253 80750253 T C OTOGL Missense_Mutation p.L1946S 0.16 deleterious(0) possibly_damaging(0.699) TCGA-BR-6452-01 12 8083940 8083940 A - SLC2A3 Frame_Shift_Del p.F137Lfs*106 0.16 TCGA-BR-6452-01 12 8203211 8203211 G A FOXJ2 Missense_Mutation p.R544H 0.08 deleterious(0.03) probably_damaging(0.988) TCGA-BR-6452-01 12 8212130 8212130 T C C3AR1 Missense_Mutation p.T218A 0.10 tolerated(0.59) benign(0.002) TCGA-BR-6452-01 12 83526060 83526060 C T TMTC2 Silent p.N801N 0.08 TCGA-BR-6452-01 12 85449486 85449486 A G LRRIQ1 Silent p.P305P 0.09 TCGA-BR-6452-01 12 88524079 88524079 T - CEP290 Frame_Shift_Del p.N212Tfs*14 0.24 TCGA-BR-6452-01 12 88586525 88586525 A - TMTC3 Frame_Shift_Del p.N619Tfs*8 0.09 TCGA-BR-6452-01 12 8990998 8990998 T C A2ML1 Missense_Mutation p.Y308H 0.10 tolerated(0.11) possibly_damaging(0.465) TCGA-BR-6452-01 12 89917838 89917840 AGG - GALNT4 In_Frame_Del p.P163del 0.24 TCGA-BR-6452-01 12 89917932 89917932 C A GALNT4 Missense_Mutation p.R132M 0.12 tolerated(0.07) probably_damaging(0.935) TCGA-BR-6452-01 12 89997947 89997947 G A ATP2B1 Silent p.G873G 0.19 TCGA-BR-6452-01 12 9089499 9089499 T A PHC1 Missense_Mutation p.Y806N 0.15 deleterious(0) unknown(0) TCGA-BR-6452-01 12 91539849 91539849 C T DCN Missense_Mutation p.G356R 0.21 deleterious(0) probably_damaging(0.996) TCGA-BR-6452-01 12 9221379 9221379 A T A2M Missense_Mutation p.D1441E 0.15 tolerated(0.06) benign(0.004) TCGA-BR-6452-01 12 9262545 9262545 C A A2M Missense_Mutation p.E197D 0.09 tolerated(0.07) benign(0.233) TCGA-BR-6452-01 12 9316284 9316284 T C PZP Missense_Mutation p.I906V 0.09 tolerated(0.45) benign(0.01) TCGA-BR-6452-01 12 94975728 94975728 T C TMCC3 Missense_Mutation p.H222R 0.08 deleterious(0.04) probably_damaging(0.999) TCGA-BR-6452-01 12 95656842 95656842 C T VEZT Missense_Mutation p.A140V 0.19 tolerated(0.06) probably_damaging(0.999) TCGA-BR-6452-01 12 96288811 96288811 G A CCDC38 Missense_Mutation p.A243V 0.07 tolerated(0.26) benign(0.005) TCGA-BR-6452-01 12 97093817 97093817 A - C12orf55 Frame_Shift_Del p.N2142Tfs*16 0.10 TCGA-BR-6452-01 12 977470 977470 C T WNK1 Intron 0.27 TCGA-BR-6452-01 12 98927983 98927983 C T TMPO Missense_Mutation p.R650C 0.08 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-BR-6452-01 12 98928112 98928112 A T TMPO Nonsense_Mutation p.K693* 0.11 TCGA-BR-6452-01 12 994674 994674 T A WNK1 Missense_Mutation p.H1568Q 0.09 tolerated_low_confidence(0.07) possibly_damaging(0.84) TCGA-BR-6452-01 13 100959498 100959498 A T PCCA Missense_Mutation p.D446V 0.11 deleterious(0) probably_damaging(0.975) TCGA-BR-6452-01 13 101277794 101277794 G A TMTC4 Missense_Mutation p.R611C 0.18 deleterious(0.05) benign(0.247) TCGA-BR-6452-01 13 101287129 101287129 C A TMTC4 Missense_Mutation p.R479L 0.12 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 13 101707766 101707766 C T NALCN Missense_Mutation p.V1700M 0.18 tolerated_low_confidence(0.21) possibly_damaging(0.547) TCGA-BR-6452-01 13 101733920 101733920 C T NALCN Silent p.T1281T 0.16 TCGA-BR-6452-01 13 101757279 101757279 C A NALCN Nonsense_Mutation p.G868* 0.10 TCGA-BR-6452-01 13 101910797 101910797 C T NALCN Silent p.A421A 0.11 TCGA-BR-6452-01 13 103420632 103420632 T C TEX30 Silent p.K92K 0.07 TCGA-BR-6452-01 13 107148116 107148116 A T EFNB2 Missense_Mutation p.I160N 0.18 deleterious(0) probably_damaging(0.996) TCGA-BR-6452-01 13 108518877 108518877 C T FAM155A Missense_Mutation p.R23Q 0.16 deleterious(0) probably_damaging(0.99) TCGA-BR-6452-01 13 108861796 108861796 A G LIG4 Silent p.S607S 0.09 TCGA-BR-6452-01 13 108861807 108861807 C T LIG4 Missense_Mutation p.G604R 0.10 tolerated(0.51) benign(0.008) TCGA-BR-6452-01 13 108922166 108922166 A G TNFSF13B 5'UTR 0.15 TCGA-BR-6452-01 13 109438032 109438032 A T MYO16 Missense_Mutation p.D164V 0.12 deleterious(0) probably_damaging(0.996) TCGA-BR-6452-01 13 110822921 110822921 C T COL4A1 Missense_Mutation p.G1239R 0.25 probably_damaging(0.997) TCGA-BR-6452-01 13 111156324 111156324 C - COL4A2 Frame_Shift_Del p.G1426Efs*33 0.18 TCGA-BR-6452-01 13 111290911 111290911 C T CARKD 3'UTR 0.23 TCGA-BR-6452-01 13 111862257 111862257 T C ARHGEF7 Missense_Mutation p.S147P 0.06 tolerated_low_confidence(0.09) possibly_damaging(0.627) TCGA-BR-6452-01 13 111927973 111927973 T C ARHGEF7 Missense_Mutation p.L477P 0.08 deleterious(0) possibly_damaging(0.506) TCGA-BR-6452-01 13 113513704 113513704 C T ATP11A Intron 0.08 TCGA-BR-6452-01 13 113532535 113532535 A G ATP11A Missense_Mutation p.K1111R 0.08 tolerated(0.62) benign(0.001) TCGA-BR-6452-01 13 113669143 113669143 G A MCF2L Missense_Mutation p.R49H 0.08 deleterious(0) possibly_damaging(0.891) TCGA-BR-6452-01 13 113773089 113773089 G A F7 Missense_Mutation p.A390T 0.26 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 13 114324068 114324068 G A GRK1 Missense_Mutation p.A256T 0.20 tolerated(0.26) possibly_damaging(0.503) TCGA-BR-6452-01 13 114537624 114537624 C T GAS6 Missense_Mutation p.G245D 0.16 tolerated(0.21) benign(0.058) TCGA-BR-6452-01 13 114538673 114538673 G A GAS6 Intron 0.10 TCGA-BR-6452-01 13 114780792 114780792 T C RASA3 Missense_Mutation p.Y433C 0.10 deleterious(0) possibly_damaging(0.882) TCGA-BR-6452-01 13 20010428 20010429 - A TPTE2 Frame_Shift_Ins p.G352Wfs*7 0.11 TCGA-BR-6452-01 13 20412952 20412952 C T ZMYM5 Missense_Mutation p.G254R 0.10 deleterious(0) probably_damaging(0.979) TCGA-BR-6452-01 13 20579332 20579332 G T ZMYM2 Nonsense_Mutation p.G418* 0.09 TCGA-BR-6452-01 13 21373315 21373315 A G XPO4 Missense_Mutation p.Y771H 0.08 tolerated(0.05) probably_damaging(0.984) TCGA-BR-6452-01 13 21562755 21562755 C T LATS2 Silent p.A388A 0.31 TCGA-BR-6452-01 13 21562993 21562993 G A LATS2 Missense_Mutation p.A309V 0.23 deleterious_low_confidence(0.01) benign(0.024) TCGA-BR-6452-01 13 21736007 21736007 C T SKA3 Missense_Mutation p.A251T 0.15 tolerated(0.33) benign(0.014) TCGA-BR-6452-01 13 21875703 21875703 G A LINC00422 3'Flank 0.23 TCGA-BR-6452-01 13 23898698 23898698 G T SGCG 3'UTR 0.26 TCGA-BR-6452-01 13 23904580 23904580 G T SACS Missense_Mutation p.L4479I 0.08 probably_damaging(0.997) TCGA-BR-6452-01 13 24233272 24233272 G A TNFRSF19 Missense_Mutation p.A177T 0.24 deleterious(0.03) probably_damaging(0.93) TCGA-BR-6452-01 13 24384050 24384050 T - MIPEP Frame_Shift_Del p.N556Ifs*37 0.17 TCGA-BR-6452-01 13 24890300 24890300 C T C1QTNF9 Silent p.G53G 0.30 TCGA-BR-6452-01 13 25072362 25072362 T C PARP4 Silent p.G161G 0.10 TCGA-BR-6452-01 13 25276190 25276190 G A ATP12A Missense_Mutation p.V673M 0.17 deleterious(0.01) benign(0.204) TCGA-BR-6452-01 13 25670381 25670381 G - PABPC3 Frame_Shift_Del p.D17Tfs*6 0.12 TCGA-BR-6452-01 13 25672238 25672238 A T PABPC3 3'UTR 0.07 TCGA-BR-6452-01 13 25672249 25672249 C T PABPC3 3'UTR 0.09 TCGA-BR-6452-01 13 27259835 27259836 - A WASF3 Frame_Shift_Ins p.V457Gfs*17 0.13 TCGA-BR-6452-01 13 27333537 27333537 T A GPR12 Missense_Mutation p.Y143F 0.11 tolerated(0.2) probably_damaging(0.987) TCGA-BR-6452-01 13 28608021 28608021 T C FLT3 Intron 0.10 TCGA-BR-6452-01 13 28866538 28866538 A G PAN3 Missense_Mutation p.E848G 0.11 deleterious(0) possibly_damaging(0.805) TCGA-BR-6452-01 13 28959109 28959109 A C FLT1 Missense_Mutation p.S677A 0.09 deleterious(0.02) probably_damaging(0.997) TCGA-BR-6452-01 13 29855913 29855913 C G MTUS2 Missense_Mutation p.A916G 0.11 tolerated(0.11) benign(0.242) TCGA-BR-6452-01 13 32332460 32332460 A G RXFP2 Missense_Mutation p.N54D 0.07 deleterious(0) probably_damaging(0.978) TCGA-BR-6452-01 13 32808832 32808832 A G FRY Silent p.A1883A 0.07 TCGA-BR-6452-01 13 32839709 32839709 G T FRY Silent p.G2634G 0.09 TCGA-BR-6452-01 13 32841346 32841346 G A FRY Silent p.S2662S 0.13 TCGA-BR-6452-01 13 32906609 32906609 A T BRCA2 Missense_Mutation p.I332F 0.07 tolerated(0.17) probably_damaging(0.923) TCGA-BR-6452-01 13 33635256 33635256 C T KL Silent p.H680H 0.10 TCGA-BR-6452-01 13 33692261 33692261 T A STARD13 Missense_Mutation p.D741V 0.10 deleterious(0) probably_damaging(0.958) TCGA-BR-6452-01 13 33703177 33703177 G A STARD13 Missense_Mutation p.T546M 0.11 deleterious(0.01) possibly_damaging(0.64) TCGA-BR-6452-01 13 36242655 36242655 A C NBEA Silent p.R2917R 0.08 TCGA-BR-6452-01 13 36348794 36348794 G A DCLK1 Silent p.D725D 0.17 TCGA-BR-6452-01 13 36699987 36699987 C T DCLK1 Silent p.S96S 0.11 TCGA-BR-6452-01 13 36909169 36909169 C T SPG20 Missense_Mutation p.G267R 0.18 deleterious(0) possibly_damaging(0.873) TCGA-BR-6452-01 13 37422679 37422680 AA - SMAD9 3'UTR 0.12 TCGA-BR-6452-01 13 37614783 37614783 T C SUPT20H Missense_Mutation p.Y148C 0.09 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 13 37678704 37678704 T - CSNK1A1L Frame_Shift_Del p.K230Nfs*31 0.09 TCGA-BR-6452-01 13 38153250 38153250 A G POSTN Silent p.D600D 0.09 TCGA-BR-6452-01 13 39263259 39263259 A T FREM2 Missense_Mutation p.D593V 0.09 deleterious(0) possibly_damaging(0.729) TCGA-BR-6452-01 13 39432107 39432107 C T FREM2 Silent p.D2384D 0.31 TCGA-BR-6452-01 13 39433580 39433580 T - FREM2 Frame_Shift_Del p.F2459Lfs*27 0.08 TCGA-BR-6452-01 13 39450201 39450201 G A FREM2 Missense_Mutation p.G2775D 0.08 tolerated(0.12) benign(0.006) TCGA-BR-6452-01 13 39587269 39587269 A T PROSER1 Missense_Mutation p.F707Y 0.11 deleterious(0.01) probably_damaging(0.984) TCGA-BR-6452-01 13 39587655 39587655 T C PROSER1 Silent p.S578S 0.09 TCGA-BR-6452-01 13 40251660 40251660 C T COG6 Silent p.L162L 0.19 TCGA-BR-6452-01 13 40325314 40325314 A G COG6 3'UTR 0.30 TCGA-BR-6452-01 13 41706252 41706252 A T KBTBD6 Silent p.G132G 0.08 TCGA-BR-6452-01 13 41902913 41902913 A G NAA16 Missense_Mutation p.N249D 0.10 tolerated(0.6) benign(0.001) TCGA-BR-6452-01 13 41936272 41936272 A - NAA16 Frame_Shift_Del p.K507Nfs*5 0.23 TCGA-BR-6452-01 13 42303761 42303761 G T VWA8 Missense_Mutation p.A852D 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-BR-6452-01 13 42385394 42385394 A G VWA8 Missense_Mutation p.L677P 0.06 deleterious(0.03) benign(0.091) TCGA-BR-6452-01 13 42795459 42795459 T C DGKH Missense_Mutation p.Y1168H 0.07 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 13 42872729 42872729 A T AKAP11 Missense_Mutation p.I138F 0.08 deleterious(0.01) possibly_damaging(0.481) TCGA-BR-6452-01 13 42893303 42893303 A - AKAP11 Frame_Shift_Del p.A1884Lfs*38 0.21 TCGA-BR-6452-01 13 45768438 45768438 C T KCTD4 Missense_Mutation p.V89I 0.20 tolerated(0.83) benign(0.057) TCGA-BR-6452-01 13 46287807 46287807 C T SPERT Missense_Mutation p.S216L 0.09 tolerated(0.14) possibly_damaging(0.489) TCGA-BR-6452-01 13 46549903 46549903 C A ZC3H13 Missense_Mutation p.E661D 0.13 unknown(0) TCGA-BR-6452-01 13 46559477 46559477 G A ZC3H13 Nonsense_Mutation p.R559* 0.11 TCGA-BR-6452-01 13 46638817 46638817 G A CPB2 Silent p.D254D 0.08 TCGA-BR-6452-01 13 46661956 46661956 C T CPB2 Splice_Site p.X25_splice 0.10 TCGA-BR-6452-01 13 47351597 47351597 C T ESD Silent p.L254L 0.22 TCGA-BR-6452-01 13 47409003 47409003 T G HTR2A Missense_Mutation p.D462A 0.11 tolerated(0.58) benign(0) TCGA-BR-6452-01 13 48921969 48921969 A G RB1 Missense_Mutation p.E170G 0.08 tolerated(0.43) benign(0.005) TCGA-BR-6452-01 13 49781431 49781431 G A FNDC3A Missense_Mutation p.R1166Q 0.30 tolerated(0.66) benign(0.004) TCGA-BR-6452-01 13 49833617 49833617 T C CDADC1 Missense_Mutation p.S130P 0.25 deleterious(0.02) possibly_damaging(0.656) TCGA-BR-6452-01 13 49885125 49885125 A G CAB39L Missense_Mutation p.F280S 0.06 deleterious(0) probably_damaging(0.998) TCGA-BR-6452-01 13 50050783 50050783 T A SETDB2 Nonsense_Mutation p.C171* 0.18 TCGA-BR-6452-01 13 50055082 50055082 G A SETDB2 Splice_Site p.X341_splice 0.08 TCGA-BR-6452-01 13 50594625 50594625 T C KCNRG 3'UTR 0.11 TCGA-BR-6452-01 13 51936172 51936172 C T SERPINE3 3'UTR 0.09 TCGA-BR-6452-01 13 52515217 52515217 C T ATP7B Missense_Mutation p.G1186S 0.13 deleterious(0.01) probably_damaging(1) TCGA-BR-6452-01 13 52523920 52523920 G A ATP7B Nonsense_Mutation p.Q915* 0.08 TCGA-BR-6452-01 13 52539088 52539088 C T ATP7B Missense_Mutation p.V597I 0.15 deleterious(0.01) probably_damaging(0.996) TCGA-BR-6452-01 13 52663438 52663438 T C NEK5 Missense_Mutation p.Y407C 0.08 deleterious(0) probably_damaging(0.959) TCGA-BR-6452-01 13 52952905 52952905 T C THSD1 Silent p.P400P 0.18 TCGA-BR-6452-01 13 53029630 53029630 T C CKAP2 5'UTR 0.29 TCGA-BR-6452-01 13 53420245 53420245 C T PCDH8 Missense_Mutation p.R776H 0.20 deleterious(0.02) probably_damaging(0.983) TCGA-BR-6452-01 13 58208481 58208481 G A PCDH17 Missense_Mutation p.A601T 0.10 deleterious(0.01) possibly_damaging(0.61) TCGA-BR-6452-01 13 58208684 58208684 C T PCDH17 Silent p.H668H 0.21 TCGA-BR-6452-01 13 58208869 58208869 G A PCDH17 Missense_Mutation p.C730Y 0.29 deleterious(0) probably_damaging(0.971) TCGA-BR-6452-01 13 60240957 60240957 C A DIAPH3 Nonsense_Mutation p.E1115* 0.12 TCGA-BR-6452-01 13 60616864 60616864 G T DIAPH3 Missense_Mutation p.L196M 0.08 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 13 61986186 61986186 A G PCDH20 Silent p.S682S 0.11 TCGA-BR-6452-01 13 72049923 72049923 T C DACH1 Silent p.A645A 0.12 TCGA-BR-6452-01 13 72204775 72204775 T - DACH1 Frame_Shift_Del p.I349Sfs*3 0.09 TCGA-BR-6452-01 13 73350153 73350153 A G DIS3 Silent p.G244G 0.08 TCGA-BR-6452-01 13 77671955 77671955 T A MYCBP2 Missense_Mutation p.M3074L 0.11 possibly_damaging(0.636) TCGA-BR-6452-01 13 79219069 79219069 A G RNF219 Silent p.L46L 0.08 TCGA-BR-6452-01 13 88328670 88328670 C T SLITRK5 Missense_Mutation p.R343C 0.22 deleterious(0) possibly_damaging(0.856) TCGA-BR-6452-01 13 93879729 93879729 C T GPC6 Missense_Mutation p.A7V 0.13 tolerated(0.62) possibly_damaging(0.787) TCGA-BR-6452-01 13 98116606 98116606 C T RAP2A Silent p.D154D 0.23 TCGA-BR-6452-01 13 98662198 98662198 T A IPO5 Missense_Mutation p.Y640N 0.08 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 13 98671963 98671963 G A IPO5 Missense_Mutation p.V1007I 0.25 tolerated(0.15) benign(0.143) TCGA-BR-6452-01 13 98673356 98673356 A G IPO5 Missense_Mutation p.K1077R 0.09 tolerated(0.34) benign(0.373) TCGA-BR-6452-01 13 98829068 98829068 C A RNF113B Silent p.R141R 0.15 TCGA-BR-6452-01 13 99092237 99092237 G - FARP1 Frame_Shift_Del p.V821Cfs*5 0.11 TCGA-BR-6452-01 13 99105342 99105342 A G STK24 3'UTR 0.38 TCGA-BR-6452-01 13 99105388 99105389 - A STK24 3'UTR 0.15 TCGA-BR-6452-01 13 99461670 99461670 G A DOCK9 Missense_Mutation p.T1768I 0.10 tolerated(0.53) possibly_damaging(0.476) TCGA-BR-6452-01 13 99476757 99476757 G A DOCK9 Silent p.G1675G 0.31 TCGA-BR-6452-01 14 100406438 100406438 C T EML1 Missense_Mutation p.R832C 0.15 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 14 100950346 100950346 G T WDR25 Missense_Mutation p.S329I 0.09 deleterious(0.02) possibly_damaging(0.572) TCGA-BR-6452-01 14 101335474 101335474 G C MIR493 RNA 0.20 TCGA-BR-6452-01 14 101528429 101528429 G A MIR377 RNA 0.11 TCGA-BR-6452-01 14 102453856 102453856 T C DYNC1H1 Missense_Mutation p.Y869H 0.17 possibly_damaging(0.841) TCGA-BR-6452-01 14 102461592 102461592 G A DYNC1H1 Silent p.V1173V 0.07 TCGA-BR-6452-01 14 102467600 102467600 G T DYNC1H1 Missense_Mutation p.W1435L 0.08 probably_damaging(0.989) TCGA-BR-6452-01 14 102474611 102474611 T C DYNC1H1 Missense_Mutation p.S1972P 0.09 probably_damaging(1) TCGA-BR-6452-01 14 102918744 102918744 G A TECPR2 Nonsense_Mutation p.W1140* 0.11 TCGA-BR-6452-01 14 103452834 103452834 T C CDC42BPB Missense_Mutation p.D227G 0.11 deleterious(0.03) benign(0.013) TCGA-BR-6452-01 14 104472992 104472992 T C TDRD9 Missense_Mutation p.L630P 0.09 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 14 104492062 104492062 A G TDRD9 Silent p.K960K 0.07 TCGA-BR-6452-01 14 105204736 105204736 C T ADSSL1 Missense_Mutation p.P150S 0.11 deleterious(0.01) possibly_damaging(0.868) TCGA-BR-6452-01 14 105207003 105207003 G A ADSSL1 Missense_Mutation p.R224H 0.19 deleterious(0.01) probably_damaging(0.997) TCGA-BR-6452-01 14 105238712 105238712 T C AKT1 Missense_Mutation p.Y417C 0.08 deleterious(0.03) probably_damaging(0.938) TCGA-BR-6452-01 14 105397263 105397263 C T PLD4 Missense_Mutation p.T301I 0.13 deleterious(0) probably_damaging(0.995) TCGA-BR-6452-01 14 105406338 105406338 C - AHNAK2 Frame_Shift_Del p.I5151* 0.10 TCGA-BR-6452-01 14 105408953 105408953 G A AHNAK2 Missense_Mutation p.R4279W 0.08 probably_damaging(0.995) TCGA-BR-6452-01 14 105410623 105410623 G T AHNAK2 Missense_Mutation p.P3722H 0.05 possibly_damaging(0.756) TCGA-BR-6452-01 14 105411049 105411049 C T AHNAK2 Missense_Mutation p.G3580D 0.07 probably_damaging(0.969) TCGA-BR-6452-01 14 105411899 105411899 C T AHNAK2 Missense_Mutation p.A3297T 0.08 possibly_damaging(0.719) TCGA-BR-6452-01 14 105412394 105412394 C T AHNAK2 Missense_Mutation p.A3132T 0.08 probably_damaging(0.909) TCGA-BR-6452-01 14 105413160 105413160 C T AHNAK2 Silent p.Q2876Q 0.28 TCGA-BR-6452-01 14 105413926 105413926 G A AHNAK2 Missense_Mutation p.P2621L 0.08 benign(0.139) TCGA-BR-6452-01 14 105416427 105416427 G A AHNAK2 Silent p.P1787P 0.10 TCGA-BR-6452-01 14 105419623 105419623 T C AHNAK2 Missense_Mutation p.D722G 0.12 probably_damaging(0.971) TCGA-BR-6452-01 14 105517541 105517541 G T GPR132 Silent p.A311A 0.16 TCGA-BR-6452-01 14 105716945 105716945 C T BTBD6 Missense_Mutation p.S465L 0.26 tolerated(0.05) possibly_damaging(0.48) TCGA-BR-6452-01 14 105818795 105818797 CTC - PACS2 In_Frame_Del p.S97del 0.10 TCGA-BR-6452-01 14 106208024 106208024 A T IGHG1 Missense_Mutation p.I260N 0.06 deleterious(0) probably_damaging(0.987) TCGA-BR-6452-01 14 106320494 106320494 T A IGHM Missense_Mutation p.Y439F 0.08 tolerated(0.07) benign(0.058) TCGA-BR-6452-01 14 106622014 106622014 C T IGHV3-16 Silent p.T77T 0.09 TCGA-BR-6452-01 14 106845488 106845488 C A IGHV3-35 Missense_Mutation p.K62N 0.06 deleterious_low_confidence(0.02) benign(0.433) TCGA-BR-6452-01 14 107078393 107078393 C T IGHV1-58 Missense_Mutation p.A111T 0.09 probably_damaging(0.987) TCGA-BR-6452-01 14 107199160 107199160 G T IGHV3-72 Silent p.A43A 0.08 TCGA-BR-6452-01 14 107283037 107283037 A G IGHV7-81 Missense_Mutation p.S36P 0.12 deleterious(0.01) probably_damaging(0.91) TCGA-BR-6452-01 14 20215683 20215683 T - OR4Q3 Frame_Shift_Del p.Y35Tfs*10 0.23 TCGA-BR-6452-01 14 20249085 20249085 A G OR4M1 Missense_Mutation p.S202G 0.06 deleterious(0) possibly_damaging(0.643) TCGA-BR-6452-01 14 20296017 20296017 A T OR4N2 Missense_Mutation p.N137I 0.08 deleterious(0) possibly_damaging(0.602) TCGA-BR-6452-01 14 20612317 20612317 C T OR4N5 Silent p.C141C 0.08 TCGA-BR-6452-01 14 20666363 20666363 A G OR11G2 Missense_Mutation p.Y290C 0.06 deleterious(0.02) possibly_damaging(0.62) TCGA-BR-6452-01 14 20837723 20837723 A - TEP1 Frame_Shift_Del p.L2479Cfs*67 0.18 TCGA-BR-6452-01 14 20845495 20845495 A G TEP1 Missense_Mutation p.F2011S 0.15 tolerated(0.14) benign(0) TCGA-BR-6452-01 14 20846985 20846985 G A TEP1 Silent p.Y1760Y 0.10 TCGA-BR-6452-01 14 20850794 20850794 C T TEP1 Silent p.T1376T 0.09 TCGA-BR-6452-01 14 20859807 20859807 A G TEP1 Missense_Mutation p.L683P 0.20 tolerated(0.19) possibly_damaging(0.723) TCGA-BR-6452-01 14 20924885 20924885 A T APEX1 Missense_Mutation p.N102I 0.08 tolerated(0.12) benign(0.027) TCGA-BR-6452-01 14 21360111 21360111 G A RNASE3 Missense_Mutation p.C89Y 0.19 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 14 21561223 21561223 G A ZNF219 Missense_Mutation p.A78V 0.24 tolerated(0.17) probably_damaging(0.997) TCGA-BR-6452-01 14 21679995 21679995 A T HNRNPC Missense_Mutation p.I217N 0.06 deleterious(0) benign(0.021) TCGA-BR-6452-01 14 21860770 21860770 A G CHD8 Missense_Mutation p.S2223P 0.07 tolerated(0.31) benign(0.307) TCGA-BR-6452-01 14 21971372 21971372 G A METTL3 Silent p.L223L 0.06 TCGA-BR-6452-01 14 22133746 22133746 G - OR4E2 Frame_Shift_Del p.G152Vfs*6 0.09 TCGA-BR-6452-01 14 22204524 22204524 C T TRAV4 Silent p.I8I 0.23 TCGA-BR-6452-01 14 22315173 22315173 G A TRAV8-2 Silent p.P37P 0.13 TCGA-BR-6452-01 14 22315190 22315190 A G TRAV8-2 Missense_Mutation p.N43S 0.10 tolerated(0.24) benign(0.057) TCGA-BR-6452-01 14 22434047 22434047 A C TRAV12-3 Missense_Mutation p.S34R 0.10 tolerated(0.27) benign(0.118) TCGA-BR-6452-01 14 22446920 22446920 T G TRAV8-6 Translation_Start_Site p.M1? 0.09 deleterious(0) probably_damaging(0.998) TCGA-BR-6452-01 14 22564661 22564661 G A TRDV1 Missense_Mutation p.A38T 0.13 tolerated(0.87) benign(0.002) TCGA-BR-6452-01 14 22600556 22600556 A G TRAV8-7 Silent p.T14T 0.12 TCGA-BR-6452-01 14 22783281 22783281 A - TRAV40 Frame_Shift_Del p.N84Tfs*5 0.14 TCGA-BR-6452-01 14 23002485 23002485 G A TRAJ10 Missense_Mutation p.G14D 0.19 unknown(0) TCGA-BR-6452-01 14 23239726 23239726 G A OXA1L Silent p.V302V 0.09 TCGA-BR-6452-01 14 23495175 23495175 A - PSMB5 3'UTR 0.30 TCGA-BR-6452-01 14 23530297 23530297 C A ACIN1 Missense_Mutation p.S1232I 0.18 benign(0.198) TCGA-BR-6452-01 14 23745847 23745847 C G HOMEZ Missense_Mutation p.S197T 0.16 tolerated(0.13) benign(0.219) TCGA-BR-6452-01 14 23746167 23746167 T C HOMEZ Silent p.L90L 0.10 TCGA-BR-6452-01 14 23842107 23842107 C A IL25 5'UTR 0.40 TCGA-BR-6452-01 14 23855309 23855309 C T MYH6 Missense_Mutation p.R1664H 0.08 tolerated(0.18) benign(0.016) TCGA-BR-6452-01 14 23858074 23858074 T C MYH6 Missense_Mutation p.E1390G 0.06 deleterious(0.01) possibly_damaging(0.864) TCGA-BR-6452-01 14 23868101 23868101 G A MYH6 Missense_Mutation p.A576V 0.24 tolerated(0.06) possibly_damaging(0.863) TCGA-BR-6452-01 14 24029026 24029026 C T AP1G2 Missense_Mutation p.D764N 0.14 tolerated(0.92) benign(0) TCGA-BR-6452-01 14 24538373 24538373 C - LRRC16B Frame_Shift_Del p.L1339* 0.20 TCGA-BR-6452-01 14 24569212 24569212 C T PCK2 Missense_Mutation p.R342W 0.06 tolerated(0.07) possibly_damaging(0.855) TCGA-BR-6452-01 14 24632717 24632717 T C IRF9 Silent p.N165N 0.10 TCGA-BR-6452-01 14 24705334 24705334 G A GMPR2 Silent p.Q169Q 0.10 TCGA-BR-6452-01 14 24839280 24839280 A T NFATC4 Missense_Mutation p.T289S 0.26 tolerated(0.56) benign(0.051) TCGA-BR-6452-01 14 25043577 25043577 T C CTSG Silent p.T156T 0.09 TCGA-BR-6452-01 14 31050312 31050312 A G G2E3 Silent p.S9S 0.12 TCGA-BR-6452-01 14 31191743 31191743 A G SCFD1 Missense_Mutation p.Q605R 0.10 deleterious(0.04) probably_damaging(0.987) TCGA-BR-6452-01 14 31354955 31354955 A T COCH Intron 0.13 TCGA-BR-6452-01 14 31554098 31554098 G T AP4S1 3'UTR 0.22 TCGA-BR-6452-01 14 31856444 31856444 A T HEATR5A Nonsense_Mutation p.C64* 0.22 TCGA-BR-6452-01 14 32562224 32562224 C T ARHGAP5 Silent p.C783C 0.26 TCGA-BR-6452-01 14 33069995 33069996 - A AKAP6 Frame_Shift_Ins p.A911Gfs*2 0.13 TCGA-BR-6452-01 14 33290606 33290606 A G AKAP6 Splice_Site p.X1197_splice 0.11 TCGA-BR-6452-01 14 35488186 35488186 T - SRP54 Frame_Shift_Del p.F355Lfs*6 0.13 TCGA-BR-6452-01 14 36143454 36143454 T C RALGAPA1 Missense_Mutation p.N1111D 0.15 deleterious(0) probably_damaging(0.996) TCGA-BR-6452-01 14 36221254 36221254 T C RALGAPA1 Missense_Mutation p.N260D 0.13 deleterious(0) benign(0.066) TCGA-BR-6452-01 14 36784000 36784000 A G MBIP Missense_Mutation p.L124P 0.09 tolerated(0.16) benign(0.005) TCGA-BR-6452-01 14 37132275 37132275 T C PAX9 Missense_Mutation p.Y60H 0.09 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 14 37132666 37132666 G A PAX9 Missense_Mutation p.R190H 0.14 deleterious(0.02) probably_damaging(0.991) TCGA-BR-6452-01 14 37180557 37180557 T C SLC25A21 Missense_Mutation p.Y190C 0.18 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 14 37194876 37194876 C T SLC25A21 Missense_Mutation p.A113T 0.12 tolerated(0.26) benign(0.006) TCGA-BR-6452-01 14 37892127 37892127 A G MIPOL1 Missense_Mutation p.E335G 0.14 deleterious(0) probably_damaging(0.988) TCGA-BR-6452-01 14 37969207 37969207 A G MIPOL1 Missense_Mutation p.I376V 0.13 tolerated(0.67) benign(0.019) TCGA-BR-6452-01 14 38265994 38265994 C T TTC6 Missense_Mutation p.L1291F 0.11 tolerated(0.15) possibly_damaging(0.901) TCGA-BR-6452-01 14 38296418 38296418 A G TTC6 Silent p.E1715E 0.10 TCGA-BR-6452-01 14 38724773 38724773 A T CLEC14A Missense_Mutation p.V152D 0.10 tolerated(0.19) possibly_damaging(0.851) TCGA-BR-6452-01 14 39771359 39771359 G A CTAGE5 Missense_Mutation p.M279I 0.07 deleterious(0.04) benign(0.059) TCGA-BR-6452-01 14 39868656 39868656 A - FBXO33 3'UTR 0.50 TCGA-BR-6452-01 14 44975832 44975832 T C FSCB Missense_Mutation p.N120S 0.06 tolerated(1) benign(0.012) TCGA-BR-6452-01 14 45398323 45398323 T C KLHL28 Missense_Mutation p.T542A 0.10 tolerated(0.05) benign(0.091) TCGA-BR-6452-01 14 45432481 45432481 G A FAM179B Missense_Mutation p.R286Q 0.09 tolerated_low_confidence(0.11) probably_damaging(0.948) TCGA-BR-6452-01 14 45433203 45433203 C T FAM179B Missense_Mutation p.R527C 0.06 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 14 45645393 45645393 G A FANCM Missense_Mutation p.D1146N 0.07 tolerated(0.38) benign(0.04) TCGA-BR-6452-01 14 45665602 45665602 C A FANCM Silent p.I1856I 0.07 TCGA-BR-6452-01 14 45665650 45665650 A G FANCM Silent p.L1872L 0.27 TCGA-BR-6452-01 14 45675336 45675336 A T MIS18BP1 Missense_Mutation p.Y1064N 0.09 tolerated(1) benign(0) TCGA-BR-6452-01 14 50050329 50050329 T A RPS29 Intron 0.33 TCGA-BR-6452-01 14 50255864 50255864 C T NEMF Silent p.K965K 0.06 TCGA-BR-6452-01 14 50550523 50550523 G A C14orf183 Missense_Mutation p.T274M 0.10 tolerated_low_confidence(0.2) possibly_damaging(0.897) TCGA-BR-6452-01 14 50904618 50904618 A G MAP4K5 Missense_Mutation p.L606P 0.07 deleterious(0) probably_damaging(0.945) TCGA-BR-6452-01 14 51210974 51210974 C A NIN Missense_Mutation p.S1725I 0.07 tolerated(0.26) benign(0.023) TCGA-BR-6452-01 14 51237236 51237236 T - NIN Frame_Shift_Del p.N435Mfs*19 0.18 TCGA-BR-6452-01 14 51245521 51245521 T C NIN Missense_Mutation p.H146R 0.08 tolerated(0.66) benign(0.008) TCGA-BR-6452-01 14 51352376 51352376 A G ABHD12B Silent p.R177R 0.08 TCGA-BR-6452-01 14 52534616 52534616 G A NID2 Missense_Mutation p.A165V 0.08 deleterious(0.04) possibly_damaging(0.839) TCGA-BR-6452-01 14 52949652 52949652 A G TXNDC16 Silent p.V380V 0.09 TCGA-BR-6452-01 14 52981596 52981596 A G TXNDC16 Splice_Site p.X202_splice 0.08 TCGA-BR-6452-01 14 53331134 53331135 - T FERMT2 Frame_Shift_Ins p.Y530Vfs*2 0.10 TCGA-BR-6452-01 14 53513450 53513480 AATCAGTTTTAGGCCATTCATGTCCTTCAAG TCAGTTTTAGGCCATTCATGTCCTTCA DDHD1 3'UTR 0.21 TCGA-BR-6452-01 14 53570477 53570477 A T DDHD1 Missense_Mutation p.H312Q 0.10 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 14 54417455 54417455 G A BMP4 Silent p.G174G 0.10 TCGA-BR-6452-01 14 54418876 54418876 C T BMP4 Missense_Mutation p.S22N 0.11 tolerated(0.76) benign(0.005) TCGA-BR-6452-01 14 55451560 55451561 - C WDHD1 Frame_Shift_Ins p.D596Gfs*22 0.09 TCGA-BR-6452-01 14 55510474 55510474 A G SOCS4 Missense_Mutation p.T239A 0.11 tolerated(0.56) benign(0.012) TCGA-BR-6452-01 14 55510709 55510709 A G SOCS4 Missense_Mutation p.D317G 0.12 deleterious(0.05) benign(0.049) TCGA-BR-6452-01 14 55907245 55907245 G A TBPL2 Missense_Mutation p.P7S 0.11 deleterious_low_confidence(0.02) possibly_damaging(0.641) TCGA-BR-6452-01 14 57052612 57052612 T - TMEM260 Frame_Shift_Del p.F111Sfs*25 0.28 TCGA-BR-6452-01 14 57070532 57070532 G A TMEM260 Splice_Site p.X115_splice 0.08 TCGA-BR-6452-01 14 57088287 57088287 T C TMEM260 Missense_Mutation p.F422S 0.07 deleterious(0) probably_damaging(0.982) TCGA-BR-6452-01 14 57268429 57268429 C G OTX2 3'UTR 0.15 TCGA-BR-6452-01 14 57271037 57271037 G A OTX2 Missense_Mutation p.R48W 0.31 deleterious(0.01) benign(0.24) TCGA-BR-6452-01 14 57713439 57713439 T C EXOC5 Missense_Mutation p.K87R 0.06 tolerated(0.32) benign(0.003) TCGA-BR-6452-01 14 58038710 58038710 C T SLC35F4 Missense_Mutation p.G315S 0.26 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 14 59112846 59112846 T C DACT1 Missense_Mutation p.V502A 0.08 tolerated(0.6) benign(0.002) TCGA-BR-6452-01 14 60574744 60574744 C A PCNXL4 Intron 0.15 TCGA-BR-6452-01 14 60581930 60581930 A G PCNXL4 Missense_Mutation p.T136A 0.09 tolerated(1) benign(0) TCGA-BR-6452-01 14 60585237 60585237 T C PCNXL4 Missense_Mutation p.L356S 0.11 deleterious(0) probably_damaging(0.938) TCGA-BR-6452-01 14 60903532 60903532 A G C14orf39 3'UTR 0.08 TCGA-BR-6452-01 14 60903672 60903672 T G C14orf39 Missense_Mutation p.D552A 0.23 deleterious(0) probably_damaging(0.932) TCGA-BR-6452-01 14 60976477 60976477 C T SIX6 Silent p.L121L 0.23 TCGA-BR-6452-01 14 61115821 61115821 G A SIX1 Silent p.R29R 0.08 TCGA-BR-6452-01 14 61346478 61346478 T C MNAT1 Missense_Mutation p.L245P 0.08 tolerated(0.09) probably_damaging(0.988) TCGA-BR-6452-01 14 63842769 63842769 C T PPP2R5E Silent p.E454E 0.14 TCGA-BR-6452-01 14 64608200 64608200 C T SYNE2 Missense_Mutation p.L5040F 0.14 possibly_damaging(0.73) TCGA-BR-6452-01 14 64628970 64628971 - C SYNE2 Frame_Shift_Ins p.A5428Sfs*11 0.16 TCGA-BR-6452-01 14 64676135 64676135 G A SYNE2 Intron 0.10 TCGA-BR-6452-01 14 65406199 65406199 T A GPX2 3'UTR 0.10 TCGA-BR-6452-01 14 67589003 67589003 G T GPHN Missense_Mutation p.G553W 0.25 deleterious(0) probably_damaging(0.99) TCGA-BR-6452-01 14 67787971 67787971 A G MPP5 Missense_Mutation p.T579A 0.23 tolerated(0.14) benign(0.133) TCGA-BR-6452-01 14 67859098 67859098 A G PLEK2 Missense_Mutation p.L239P 0.22 deleterious(0) benign(0.309) TCGA-BR-6452-01 14 68044777 68044777 C T PLEKHH1 Missense_Mutation p.A871V 0.18 deleterious(0.01) benign(0.082) TCGA-BR-6452-01 14 68249902 68249902 C - ZFYVE26 Frame_Shift_Del p.A1323Lfs*5 0.22 TCGA-BR-6452-01 14 69795187 69795187 C T GALNT16 Missense_Mutation p.R197C 0.08 deleterious(0) probably_damaging(0.992) TCGA-BR-6452-01 14 70263858 70263858 G A SLC10A1 Silent p.N5N 0.23 TCGA-BR-6452-01 14 70517823 70517823 G A SLC8A3 Missense_Mutation p.T678I 0.14 deleterious(0) benign(0.024) TCGA-BR-6452-01 14 70712780 70712780 A G ADAM21P1 RNA 0.07 TCGA-BR-6452-01 14 70713621 70713621 T C ADAM21P1 RNA 0.09 TCGA-BR-6452-01 14 70713999 70713999 C T ADAM21P1 RNA 0.10 TCGA-BR-6452-01 14 70924308 70924308 C A ADAM21 Missense_Mutation p.A31D 0.08 tolerated(0.26) benign(0.001) TCGA-BR-6452-01 14 70989594 70989594 A G ADAM20 Silent p.S677S 0.08 TCGA-BR-6452-01 14 71429014 71429014 G T PCNX Missense_Mutation p.R145I 0.06 deleterious(0.04) probably_damaging(0.998) TCGA-BR-6452-01 14 71435739 71435739 A G PCNX Silent p.G172G 0.07 TCGA-BR-6452-01 14 71444774 71444774 T C PCNX Missense_Mutation p.S574P 0.24 tolerated_low_confidence(0.18) benign(0.12) TCGA-BR-6452-01 14 71571997 71571997 T C PCNX Silent p.I2047I 0.16 TCGA-BR-6452-01 14 72054526 72054526 C G SIPA1L1 5'UTR 0.29 TCGA-BR-6452-01 14 72152235 72152235 T A SIPA1L1 Missense_Mutation p.S1087R 0.11 tolerated(0.06) benign(0.157) TCGA-BR-6452-01 14 73181139 73181139 A G DPF3 Missense_Mutation p.V199A 0.10 tolerated(0.61) benign(0.002) TCGA-BR-6452-01 14 73721271 73721271 G T PAPLN Silent p.R424R 0.06 TCGA-BR-6452-01 14 73750839 73750839 T C NUMB Missense_Mutation p.E300G 0.07 deleterious(0.02) possibly_damaging(0.794) TCGA-BR-6452-01 14 73945354 73945354 G T HEATR4 Missense_Mutation p.P1013H 0.12 tolerated_low_confidence(0.19) benign(0) TCGA-BR-6452-01 14 73959084 73959084 C - HEATR4 Intron 0.16 TCGA-BR-6452-01 14 74128725 74128725 T A DNAL1 Missense_Mutation p.I63N 0.27 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 14 74205679 74205679 G A ELMSAN1 Missense_Mutation p.R345C 0.21 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 14 74206622 74206622 A G ELMSAN1 Silent p.P30P 0.11 TCGA-BR-6452-01 14 74206623 74206623 G A ELMSAN1 Missense_Mutation p.P30L 0.11 tolerated_low_confidence(0.18) benign(0.002) TCGA-BR-6452-01 14 74416672 74416672 T C FAM161B Intron 0.08 TCGA-BR-6452-01 14 74534085 74534085 G A ALDH6A1 Missense_Mutation p.A347V 0.11 tolerated(0.13) possibly_damaging(0.744) TCGA-BR-6452-01 14 74758990 74758990 G A ABCD4 Missense_Mutation p.T373I 0.10 tolerated(0.23) benign(0.03) TCGA-BR-6452-01 14 74824569 74824569 G A VRTN Silent p.P361P 0.20 TCGA-BR-6452-01 14 74874616 74874616 G A SYNDIG1L Missense_Mutation p.T165I 0.09 deleterious(0) possibly_damaging(0.724) TCGA-BR-6452-01 14 74975558 74975558 C T LTBP2 Silent p.Q1167Q 0.09 TCGA-BR-6452-01 14 75078162 75078162 C T LTBP2 Silent p.R162R 0.11 TCGA-BR-6452-01 14 75248466 75248466 C - YLPM1 Frame_Shift_Del p.P575Hfs*72 0.09 TCGA-BR-6452-01 14 75373676 75373676 T A RPS6KL1 3'UTR 0.08 TCGA-BR-6452-01 14 75483736 75483736 G T MLH3 3'UTR 0.11 TCGA-BR-6452-01 14 76107378 76107378 C T FLVCR2 Missense_Mutation p.S439F 0.19 deleterious(0) probably_damaging(0.988) TCGA-BR-6452-01 14 76429788 76429788 C T TGFB3 Missense_Mutation p.R266H 0.09 tolerated(0.15) benign(0.005) TCGA-BR-6452-01 14 76437504 76437504 A T TGFB3 Missense_Mutation p.V204D 0.09 deleterious(0) probably_damaging(0.925) TCGA-BR-6452-01 14 77715740 77715740 G T TMEM63C Missense_Mutation p.Q659H 0.09 deleterious(0.01) probably_damaging(0.992) TCGA-BR-6452-01 14 77797487 77797487 G T GSTZ1 Missense_Mutation p.Q200H 0.09 tolerated(0.08) benign(0.003) TCGA-BR-6452-01 14 77942198 77942198 T C ISM2 Missense_Mutation p.T486A 0.14 deleterious(0.02) possibly_damaging(0.874) TCGA-BR-6452-01 14 78285417 78285417 T C ADCK1 Silent p.N32N 0.10 TCGA-BR-6452-01 14 80677662 80677662 G A DIO2 Missense_Mutation p.R52W 0.12 deleterious(0) probably_damaging(0.99) TCGA-BR-6452-01 14 81574744 81574744 A G TSHR Missense_Mutation p.T214A 0.19 tolerated(0.18) benign(0.001) TCGA-BR-6452-01 14 81943446 81943446 G A SEL1L Missense_Mutation p.A752V 0.20 tolerated(0.14) benign(0.045) TCGA-BR-6452-01 14 86088684 86088684 C T FLRT2 Missense_Mutation p.R276C 0.23 deleterious(0) possibly_damaging(0.846) TCGA-BR-6452-01 14 86089822 86089822 T C FLRT2 Missense_Mutation p.L655P 0.10 tolerated(0.07) possibly_damaging(0.65) TCGA-BR-6452-01 14 89069237 89069238 - C ZC3H14 Frame_Shift_Ins p.G530Rfs*13 0.28 TCGA-BR-6452-01 14 89123818 89123818 A G EML5 Silent p.N1302N 0.08 TCGA-BR-6452-01 14 89206880 89206880 G A EML5 Nonsense_Mutation p.R188* 0.12 TCGA-BR-6452-01 14 89338740 89338740 G A TTC8 Missense_Mutation p.A431T 0.23 deleterious(0.03) probably_damaging(0.992) TCGA-BR-6452-01 14 89628761 89628762 - T FOXN3 Frame_Shift_Ins p.N490Kfs*7 0.14 TCGA-BR-6452-01 14 90442125 90442125 G A TDP1 Missense_Mutation p.A253T 0.08 deleterious(0) probably_damaging(0.982) TCGA-BR-6452-01 14 90734649 90734649 A G PSMC1 Missense_Mutation p.K258R 0.10 deleterious(0.01) possibly_damaging(0.728) TCGA-BR-6452-01 14 90754929 90754929 C T NRDE2 Silent p.V930V 0.10 TCGA-BR-6452-01 14 91211165 91211165 C T TTC7B Missense_Mutation p.A183T 0.15 tolerated(0.08) benign(0.011) TCGA-BR-6452-01 14 91247091 91247091 C T TTC7B Missense_Mutation p.A146T 0.20 tolerated(0.08) benign(0.004) TCGA-BR-6452-01 14 91701388 91701388 T A GPR68 Missense_Mutation p.N3Y 0.13 deleterious(0) possibly_damaging(0.451) TCGA-BR-6452-01 14 91804375 91804375 C T CCDC88C Missense_Mutation p.V342M 0.16 tolerated(0.07) probably_damaging(0.989) TCGA-BR-6452-01 14 92102891 92102891 G T CATSPERB Silent p.A540A 0.17 TCGA-BR-6452-01 14 92353637 92353637 G A FBLN5 Silent p.T213T 0.15 TCGA-BR-6452-01 14 92413619 92413619 G A FBLN5 5'UTR 0.14 TCGA-BR-6452-01 14 92583937 92583937 A C NDUFB1 Silent p.V62V 0.21 TCGA-BR-6452-01 14 93043784 93043784 C T RIN3 Missense_Mutation p.A110V 0.22 tolerated(0.12) unknown(0) TCGA-BR-6452-01 14 93154423 93154423 C T RIN3 Silent p.D928D 0.29 TCGA-BR-6452-01 14 93154499 93154499 C T RIN3 Missense_Mutation p.R954C 0.17 deleterious(0) probably_damaging(0.943) TCGA-BR-6452-01 14 93176081 93176081 A G LGMN Missense_Mutation p.L319P 0.07 deleterious(0) probably_damaging(0.95) TCGA-BR-6452-01 14 93761249 93761249 G A BTBD7 Silent p.C39C 0.28 TCGA-BR-6452-01 14 94069685 94069685 T C UNC79 Silent p.R1048R 0.10 TCGA-BR-6452-01 14 94517521 94517521 T C DDX24 3'UTR 0.11 TCGA-BR-6452-01 14 94780965 94780965 G T SERPINA6 Silent p.T7T 0.10 TCGA-BR-6452-01 14 95690184 95690184 T C CLMN Silent p.P51P 0.09 TCGA-BR-6452-01 14 95923565 95923565 G A SYNE3 Silent p.C246C 0.09 TCGA-BR-6452-01 14 96761477 96761477 G A ATG2B Missense_Mutation p.T1749I 0.26 tolerated(0.13) probably_damaging(0.979) TCGA-BR-6452-01 14 96998729 96998729 T C PAPOLA Silent p.T223T 0.11 TCGA-BR-6452-01 14 97010567 97010567 C A PAPOLA Silent p.T457T 0.08 TCGA-BR-6452-01 14 99697807 99697807 C T BCL11B Missense_Mutation p.R172H 0.25 tolerated(0.39) benign(0.254) TCGA-BR-6452-01 15 101109963 101109963 T A LINS Missense_Mutation p.D585V 0.08 tolerated(0.18) benign(0.148) TCGA-BR-6452-01 15 101434180 101434180 C A ALDH1A3 Missense_Mutation p.L187M 0.09 tolerated(0.18) probably_damaging(0.987) TCGA-BR-6452-01 15 101464801 101464801 G A LRRK1 5'UTR 0.23 TCGA-BR-6452-01 15 101719007 101719007 A G CHSY1 Missense_Mutation p.I332T 0.08 deleterious(0) benign(0.41) TCGA-BR-6452-01 15 102346697 102346698 - T OR4F6 Frame_Shift_Ins p.P261Sfs*8 0.09 TCGA-BR-6452-01 15 102358739 102358739 C T OR4F15 Missense_Mutation p.A117V 0.11 tolerated_low_confidence(0.1) benign(0.082) TCGA-BR-6452-01 15 23000163 23000163 C T CYFIP1 Missense_Mutation p.R1173C 0.20 deleterious(0) probably_damaging(0.996) TCGA-BR-6452-01 15 23006481 23006481 G T NIPA2 Missense_Mutation p.P275T 0.09 tolerated(0.39) benign(0.004) TCGA-BR-6452-01 15 23006661 23006661 G A NIPA2 Missense_Mutation p.H215Y 0.09 tolerated(0.15) benign(0.002) TCGA-BR-6452-01 15 23261078 23261078 G A GOLGA8I Silent p.R251R 0.18 TCGA-BR-6452-01 15 23931990 23931990 C T NDN Silent p.V125V 0.07 TCGA-BR-6452-01 15 25223574 25223574 C T SNRPN Missense_Mutation p.R236C 0.07 deleterious_low_confidence(0) unknown(0) TCGA-BR-6452-01 15 25327959 25327959 C T SNORD116-16 RNA 0.14 TCGA-BR-6452-01 15 25425726 25425726 A G SNORD115-6 3'Flank 0.10 TCGA-BR-6452-01 15 25438515 25438516 - A SNORD115-11 3'Flank 0.11 TCGA-BR-6452-01 15 25490636 25490636 G T SNORD115-41 RNA 0.09 TCGA-BR-6452-01 15 25514961 25514961 A G SNORD115-48 RNA 0.09 TCGA-BR-6452-01 15 25616489 25616489 G A UBE3A Missense_Mutation p.P281S 0.09 tolerated(0.35) benign(0.037) TCGA-BR-6452-01 15 25616842 25616842 A G UBE3A Missense_Mutation p.L163S 0.09 deleterious(0) probably_damaging(0.988) TCGA-BR-6452-01 15 25926195 25926195 A G ATP10A Silent p.F1173F 0.10 TCGA-BR-6452-01 15 25966960 25966960 T C ATP10A Missense_Mutation p.T403A 0.08 tolerated(0.12) benign(0.059) TCGA-BR-6452-01 15 25981215 25981215 A C ATP10A Missense_Mutation p.F243C 0.14 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 15 27571974 27571974 T - GABRG3 Frame_Shift_Del p.F98Lfs*16 0.09 TCGA-BR-6452-01 15 28200305 28200305 T - OCA2 Frame_Shift_Del p.K614Sfs*14 0.23 TCGA-BR-6452-01 15 28380769 28380769 T C HERC2 Missense_Mutation p.T4029A 0.06 probably_damaging(0.956) TCGA-BR-6452-01 15 28386919 28386919 A G HERC2 Missense_Mutation p.F3925S 0.07 probably_damaging(0.998) TCGA-BR-6452-01 15 28422651 28422651 G A HERC2 Silent p.G3056G 0.16 TCGA-BR-6452-01 15 28441714 28441714 A G HERC2 Silent p.A2671A 0.11 TCGA-BR-6452-01 15 28525254 28525254 T C HERC2 Missense_Mutation p.K168E 0.12 benign(0.056) TCGA-BR-6452-01 15 28599994 28599994 C T RP11-483E23.2 RNA 0.10 TCGA-BR-6452-01 15 29393928 29393928 G - APBA2 Frame_Shift_Del p.A490Pfs*10 0.08 TCGA-BR-6452-01 15 29561679 29561679 C A NDNL2 Silent p.V77V 0.25 TCGA-BR-6452-01 15 29997866 29997866 C - TJP1 Frame_Shift_Del p.G1645Afs*3 0.09 TCGA-BR-6452-01 15 31234015 31234015 C G MTMR10 Missense_Mutation p.W664C 0.26 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 15 31358307 31358307 C T TRPM1 Silent p.K271K 0.07 TCGA-BR-6452-01 15 31664305 31664305 G A KLF13 Missense_Mutation p.E224K 0.37 deleterious(0) possibly_damaging(0.635) TCGA-BR-6452-01 15 32928185 32928185 A G ARHGAP11A Intron 0.15 TCGA-BR-6452-01 15 32936006 32936006 C T SCG5 Silent p.P71P 0.15 TCGA-BR-6452-01 15 33357235 33357235 C A FMN1 Missense_Mutation p.G472V 0.11 deleterious(0) unknown(0) TCGA-BR-6452-01 15 33358942 33358942 C A FMN1 Missense_Mutation p.G382C 0.07 deleterious(0) unknown(0) TCGA-BR-6452-01 15 33359555 33359555 A C FMN1 Silent p.S177S 0.26 TCGA-BR-6452-01 15 33895365 33895365 C T RYR3 Missense_Mutation p.A655V 0.09 possibly_damaging(0.653) TCGA-BR-6452-01 15 34648162 34648162 T C NUTM1 Silent p.C623C 0.09 TCGA-BR-6452-01 15 35045359 35045359 A T GJD2 Missense_Mutation p.Y96N 0.08 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 15 35148930 35148930 A - AQR 3'UTR 0.30 TCGA-BR-6452-01 15 35185907 35185907 T C AQR Missense_Mutation p.N843S 0.07 deleterious(0.02) possibly_damaging(0.789) TCGA-BR-6452-01 15 40005645 40005645 C T FSIP1 Silent p.V396V 0.06 TCGA-BR-6452-01 15 40068628 40068628 A G FSIP1 Missense_Mutation p.V33A 0.09 deleterious(0) probably_damaging(0.948) TCGA-BR-6452-01 15 40094113 40094113 A G GPR176 Silent p.Y256Y 0.13 TCGA-BR-6452-01 15 40099369 40099369 A C GPR176 Missense_Mutation p.I88S 0.08 deleterious(0) probably_damaging(0.985) TCGA-BR-6452-01 15 40558052 40558052 C T PAK6 Missense_Mutation p.R72W 0.24 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 15 40594733 40594733 G A PLCB2 Silent p.S103S 0.22 TCGA-BR-6452-01 15 40862035 40862035 A G RPUSD2 Missense_Mutation p.S167G 0.21 tolerated(0.2) benign(0.006) TCGA-BR-6452-01 15 40866503 40866503 G A RPUSD2 3'UTR 0.08 TCGA-BR-6452-01 15 40915370 40915370 A T CASC5 Missense_Mutation p.T996S 0.13 tolerated(0.32) benign(0.003) TCGA-BR-6452-01 15 41099670 41099670 A G ZFYVE19 5'UTR 0.08 TCGA-BR-6452-01 15 41192724 41192724 G A VPS18 Missense_Mutation p.V570M 0.10 deleterious(0) possibly_damaging(0.832) TCGA-BR-6452-01 15 41352087 41352087 A C INO80 Missense_Mutation p.V607G 0.10 deleterious(0) probably_damaging(0.916) TCGA-BR-6452-01 15 41482161 41482161 A T EXD1 Missense_Mutation p.S286T 0.08 tolerated(0.09) benign(0.18) TCGA-BR-6452-01 15 41509324 41509324 G A EXD1 Silent p.G19G 0.14 TCGA-BR-6452-01 15 41799375 41799375 G - LTK Frame_Shift_Del p.Q487Rfs*43 0.12 TCGA-BR-6452-01 15 41815492 41815492 G A RPAP1 Silent p.L833L 0.12 TCGA-BR-6452-01 15 42028759 42028759 C T MGA Nonsense_Mutation p.Q1433* 0.10 TCGA-BR-6452-01 15 42034971 42034971 T - MGA Frame_Shift_Del p.L1606* 0.20 TCGA-BR-6452-01 15 42709494 42709494 A - ZNF106 3'UTR 0.28 TCGA-BR-6452-01 15 42731697 42731697 C T ZNF106 Missense_Mutation p.A1337T 0.08 tolerated(0.1) probably_damaging(0.998) TCGA-BR-6452-01 15 42731731 42731731 T C ZNF106 Silent p.E1325E 0.10 TCGA-BR-6452-01 15 43021290 43021290 G A CDAN1 Missense_Mutation p.P859L 0.16 deleterious(0) probably_damaging(0.995) TCGA-BR-6452-01 15 43026186 43026186 A T CDAN1 Missense_Mutation p.N439K 0.11 deleterious(0) probably_damaging(0.986) TCGA-BR-6452-01 15 43237655 43237655 G - UBR1 Frame_Shift_Del p.L1708Ffs*21 0.27 TCGA-BR-6452-01 15 43367236 43367236 A G UBR1 Missense_Mutation p.W157R 0.21 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 15 43500968 43500968 G A EPB42 Nonsense_Mutation p.R310* 0.24 TCGA-BR-6452-01 15 43622496 43622496 C T LCMT2 Silent p.R64R 0.15 TCGA-BR-6452-01 15 43701152 43701152 T C TP53BP1 Missense_Mutation p.Y1848C 0.14 deleterious(0) probably_damaging(0.924) TCGA-BR-6452-01 15 43714210 43714210 A G TP53BP1 Missense_Mutation p.S1315P 0.08 tolerated(0.06) benign(0.072) TCGA-BR-6452-01 15 43733752 43733752 A T TP53BP1 Missense_Mutation p.S1024T 0.09 deleterious(0.02) possibly_damaging(0.637) TCGA-BR-6452-01 15 43817621 43817621 T C MAP1A Missense_Mutation p.L1317P 0.11 benign(0.015) TCGA-BR-6452-01 15 43819858 43819858 C - MAP1A Frame_Shift_Del p.R2065Vfs*5 0.26 TCGA-BR-6452-01 15 43892737 43892737 A G STRC Missense_Mutation p.I1663T 0.19 deleterious(0.01) possibly_damaging(0.628) TCGA-BR-6452-01 15 43924970 43924970 G T CATSPER2 Silent p.S447S 0.07 TCGA-BR-6452-01 15 43991208 43991208 A G CKMT1A Missense_Mutation p.Y392C 0.12 deleterious(0.04) probably_damaging(0.936) TCGA-BR-6452-01 15 44029113 44029113 A T RNU6-354P 5'Flank 0.07 TCGA-BR-6452-01 15 44158577 44158577 A - WDR76 Frame_Shift_Del p.S625Afs*7 0.11 TCGA-BR-6452-01 15 45003728 45003728 A G B2M 5'UTR 0.17 TCGA-BR-6452-01 15 45398417 45398417 A G DUOX2 Missense_Mutation p.V685A 0.11 deleterious(0) benign(0.123) TCGA-BR-6452-01 15 45440114 45440114 A - DUOX1 Frame_Shift_Del p.K855Sfs*26 0.16 TCGA-BR-6452-01 15 45445594 45445594 C T DUOX1 Silent p.G1147G 0.18 TCGA-BR-6452-01 15 45974673 45974673 T C SQRDL Intron 0.20 TCGA-BR-6452-01 15 48063628 48063628 T G SEMA6D Silent p.T956T 0.09 TCGA-BR-6452-01 15 48063661 48063661 T A SEMA6D Missense_Mutation p.N967K 0.09 deleterious(0.02) benign(0.089) TCGA-BR-6452-01 15 48063820 48063820 T C SEMA6D Silent p.H1020H 0.05 TCGA-BR-6452-01 15 48626625 48626625 A G DUT Missense_Mutation p.Y144C 0.09 tolerated(0.11) possibly_damaging(0.512) TCGA-BR-6452-01 15 48717623 48717623 A G FBN1 Missense_Mutation p.Y2466H 0.07 probably_damaging(0.966) TCGA-BR-6452-01 15 48829959 48829959 G A FBN1 Silent p.C195C 0.08 TCGA-BR-6452-01 15 48936859 48936859 T C FBN1 Silent p.E36E 0.12 TCGA-BR-6452-01 15 48936889 48936889 G A FBN1 Silent p.D26D 0.08 TCGA-BR-6452-01 15 49081124 49081124 A G CEP152 Silent p.S349S 0.09 TCGA-BR-6452-01 15 49135610 49135610 G A SHC4 Silent p.C493C 0.17 TCGA-BR-6452-01 15 49176493 49176493 C T SHC4 Silent p.L264L 0.09 TCGA-BR-6452-01 15 49292172 49292172 T G SECISBP2L Missense_Mutation p.E754A 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-BR-6452-01 15 49509474 49509474 A T GALK2 Missense_Mutation p.Y77F 0.06 deleterious(0.05) benign(0.017) TCGA-BR-6452-01 15 50193368 50193368 T - ATP8B4 Frame_Shift_Del p.K737Sfs*10 0.23 TCGA-BR-6452-01 15 50264895 50264895 G A ATP8B4 Missense_Mutation p.T376M 0.21 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 15 50535355 50535355 C T HDC Silent p.V409V 0.09 TCGA-BR-6452-01 15 50733661 50733661 A - USP8 Frame_Shift_Del p.R76Dfs*36 0.22 TCGA-BR-6452-01 15 50769071 50769071 A G USP8 Missense_Mutation p.N292S 0.12 tolerated(1) benign(0.003) TCGA-BR-6452-01 15 50886647 50886647 C T TRPM7 Missense_Mutation p.D1152N 0.08 tolerated(0.39) possibly_damaging(0.889) TCGA-BR-6452-01 15 51285692 51285692 A T AP4E1 Missense_Mutation p.E739V 0.12 tolerated(0.05) benign(0.032) TCGA-BR-6452-01 15 51350349 51350349 G A TNFAIP8L3 Missense_Mutation p.T203I 0.14 tolerated(0.37) benign(0.271) TCGA-BR-6452-01 15 51634204 51634204 G A GLDN Missense_Mutation p.S108N 0.30 tolerated(0.34) benign(0.003) TCGA-BR-6452-01 15 51689758 51689758 C T GLDN Silent p.G260G 0.10 TCGA-BR-6452-01 15 51750703 51750704 - T DMXL2 Frame_Shift_Ins p.S2712Kfs*4 0.14 TCGA-BR-6452-01 15 51758424 51758424 A - DMXL2 Frame_Shift_Del p.S2493Qfs*21 0.13 TCGA-BR-6452-01 15 51780296 51780297 - T DMXL2 Frame_Shift_Ins p.M1691Nfs*10 0.10 TCGA-BR-6452-01 15 51828742 51828742 T A DMXL2 Missense_Mutation p.R645S 0.10 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 15 51975303 51975303 A - SCG3 Frame_Shift_Del p.T57Hfs*19 0.13 TCGA-BR-6452-01 15 52263944 52263944 A G LEO1 5'UTR 0.12 TCGA-BR-6452-01 15 52339143 52339143 G A MAPK6 Silent p.T162T 0.19 TCGA-BR-6452-01 15 52503982 52503982 T C MYO5C Missense_Mutation p.N1414S 0.07 tolerated(0.36) benign(0) TCGA-BR-6452-01 15 52564895 52564895 C T MYO5C Missense_Mutation p.R211H 0.22 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 15 52689518 52689518 C T MYO5A Missense_Mutation p.R400H 0.28 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 15 52849361 52849361 C T ARPP19 Missense_Mutation p.R35K 0.11 tolerated(1) benign(0.02) TCGA-BR-6452-01 15 52902186 52902186 C T FAM214A Missense_Mutation p.D309N 0.13 tolerated(0.08) benign(0.196) TCGA-BR-6452-01 15 53081207 53081207 A G ONECUT1 Missense_Mutation p.I292T 0.07 deleterious(0) possibly_damaging(0.799) TCGA-BR-6452-01 15 54307698 54307698 T C UNC13C Silent p.D866D 0.09 TCGA-BR-6452-01 15 54307737 54307737 T C UNC13C Silent p.V879V 0.11 TCGA-BR-6452-01 15 55516108 55516108 A G RAB27A Missense_Mutation p.I149T 0.08 deleterious(0.04) benign(0) TCGA-BR-6452-01 15 55522617 55522617 T A RAB27A Missense_Mutation p.D74V 0.09 deleterious(0) probably_damaging(0.994) TCGA-BR-6452-01 15 55652398 55652398 A T CCPG1 Missense_Mutation p.F525I 0.10 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 15 55665215 55665215 A G CCPG1 Intron 0.15 TCGA-BR-6452-01 15 55669237 55669239 CTT - CCPG1 In_Frame_Del p.E121del 0.27 TCGA-BR-6452-01 15 55783395 55783396 CT - DYX1C1 Frame_Shift_Del p.R110Sfs*27 0.22 TCGA-BR-6452-01 15 55789947 55789947 T - DYX1C1 Frame_Shift_Del p.E79Kfs*10 0.23 TCGA-BR-6452-01 15 56140591 56140591 C T NEDD4 Silent p.E854E 0.07 TCGA-BR-6452-01 15 56719831 56719831 T A TEX9 Missense_Mutation p.I331N 0.10 deleterious(0) benign(0.045) TCGA-BR-6452-01 15 57925827 57925827 T A GCOM1 Missense_Mutation p.F274Y 0.11 tolerated(0.82) benign(0.086) TCGA-BR-6452-01 15 59186310 59186310 T - SLTM Frame_Shift_Del p.N487Ifs*35 0.27 TCGA-BR-6452-01 15 59499212 59499212 G T LDHAL6B Missense_Mutation p.G25W 0.17 deleterious_low_confidence(0) possibly_damaging(0.581) TCGA-BR-6452-01 15 59506509 59506509 T - MYO1E Frame_Shift_Del p.N398Mfs*22 0.20 TCGA-BR-6452-01 15 60792166 60792166 T - RORA Frame_Shift_Del p.K477Nfs*8 0.11 TCGA-BR-6452-01 15 62155653 62155653 A G VPS13C Silent p.L3646L 0.08 TCGA-BR-6452-01 15 62208153 62208153 A G VPS13C Silent p.G2708G 0.10 TCGA-BR-6452-01 15 62210431 62210431 A G VPS13C Missense_Mutation p.F2555S 0.09 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 15 62251774 62251774 A G VPS13C Missense_Mutation p.I1310T 0.22 tolerated(0.62) benign(0.001) TCGA-BR-6452-01 15 62253854 62253854 T C VPS13C Missense_Mutation p.E1281G 0.08 tolerated(0.13) possibly_damaging(0.703) TCGA-BR-6452-01 15 62945511 62945511 A T TLN2 Missense_Mutation p.D172V 0.12 deleterious(0) benign(0.115) TCGA-BR-6452-01 15 63031735 63031735 C T TLN2 Silent p.G1292G 0.09 TCGA-BR-6452-01 15 63862713 63862713 C T USP3 Silent p.N281N 0.28 TCGA-BR-6452-01 15 63904619 63904619 T C HERC1 Missense_Mutation p.Y4744C 0.13 probably_damaging(0.999) TCGA-BR-6452-01 15 63950833 63950833 C T HERC1 Missense_Mutation p.R3170H 0.13 probably_damaging(0.996) TCGA-BR-6452-01 15 64973005 64973005 A G ZNF609 Missense_Mutation p.H1369R 0.10 deleterious(0.04) probably_damaging(0.999) TCGA-BR-6452-01 15 65111388 65111388 G A PIF1 Silent p.N456N 0.18 TCGA-BR-6452-01 15 65112130 65112130 G A PIF1 Nonsense_Mutation p.R417* 0.09 TCGA-BR-6452-01 15 65308852 65308852 A G MTFMT Silent p.S245S 0.09 TCGA-BR-6452-01 15 65746615 65746615 A G DPP8 Missense_Mutation p.S769P 0.09 tolerated(1) benign(0.003) TCGA-BR-6452-01 15 65956734 65956734 T C DENND4A Splice_Site p.X1840_splice 0.10 TCGA-BR-6452-01 15 65983416 65983416 A G DENND4A Silent p.S1171S 0.12 TCGA-BR-6452-01 15 66170134 66170134 T C RAB11A Missense_Mutation p.Y91H 0.07 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BR-6452-01 15 67004041 67004041 C T SMAD6 Missense_Mutation p.R285C 0.07 tolerated(0.2) benign(0) TCGA-BR-6452-01 15 67004051 67004051 A G SMAD6 Missense_Mutation p.Y288C 0.09 tolerated(0.11) benign(0.428) TCGA-BR-6452-01 15 67482849 67482849 G A SMAD3 Missense_Mutation p.S418N 0.13 tolerated(0.57) benign(0) TCGA-BR-6452-01 15 67528390 67528390 T - AAGAB Frame_Shift_Del p.A127Lfs*13 0.20 TCGA-BR-6452-01 15 68118726 68118726 G T SKOR1 Missense_Mutation p.C373F 0.12 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-BR-6452-01 15 68479890 68479892 CCT - PIAS1 In_Frame_Del p.S559del 0.30 TCGA-BR-6452-01 15 68608055 68608055 C T ITGA11 Missense_Mutation p.R909H 0.38 tolerated(0.2) possibly_damaging(0.646) TCGA-BR-6452-01 15 69747800 69747800 A G RPLP1 Missense_Mutation p.E100G 0.11 deleterious(0) possibly_damaging(0.788) TCGA-BR-6452-01 15 71184328 71184328 G - THAP10 Frame_Shift_Del p.P95Rfs*90 0.47 TCGA-BR-6452-01 15 71196973 71196973 A T LRRC49 Missense_Mutation p.I132L 0.10 tolerated(0.08) possibly_damaging(0.872) TCGA-BR-6452-01 15 72050275 72050275 G A THSD4 Missense_Mutation p.R817H 0.19 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 15 72455965 72455965 G A GRAMD2 Missense_Mutation p.P245L 0.11 tolerated(0.06) probably_damaging(0.951) TCGA-BR-6452-01 15 72552962 72552962 C T PARP6 Missense_Mutation p.V205I 0.08 tolerated(0.24) benign(0.044) TCGA-BR-6452-01 15 72580706 72580706 C A CELF6 Missense_Mutation p.A421S 0.07 deleterious(0.03) benign(0.034) TCGA-BR-6452-01 15 73542047 73542047 C T NEO1 Nonsense_Mutation p.R627* 0.08 TCGA-BR-6452-01 15 73547093 73547093 G A NEO1 Missense_Mutation p.R672H 0.29 tolerated(0.05) probably_damaging(0.966) TCGA-BR-6452-01 15 73575319 73575319 C T NEO1 Missense_Mutation p.H1093Y 0.06 deleterious(0.01) benign(0.296) TCGA-BR-6452-01 15 73635998 73635998 T C HCN4 Missense_Mutation p.N313D 0.08 deleterious(0) benign(0.126) TCGA-BR-6452-01 15 73994658 73994658 C A CD276 Missense_Mutation p.L48M 0.24 deleterious(0) probably_damaging(0.992) TCGA-BR-6452-01 15 74315214 74315214 G A PML Silent p.A216A 0.13 TCGA-BR-6452-01 15 74565210 74565210 T C CCDC33 Missense_Mutation p.V246A 0.10 tolerated(0.32) benign(0.008) TCGA-BR-6452-01 15 74630264 74630264 C - CYP11A1 3'UTR 0.15 TCGA-BR-6452-01 15 74741564 74741564 G A UBL7 Missense_Mutation p.P282L 0.10 deleterious(0.03) benign(0.002) TCGA-BR-6452-01 15 74888103 74888103 C A ARID3B Missense_Mutation p.S557R 0.08 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BR-6452-01 15 75117871 75117871 G A LMAN1L Silent p.L502L 0.23 TCGA-BR-6452-01 15 75646609 75646609 G A NEIL1 Missense_Mutation p.A289T 0.10 deleterious(0.02) possibly_damaging(0.599) TCGA-BR-6452-01 15 75648486 75648486 C T MAN2C1 Nonsense_Mutation p.W1004* 0.09 TCGA-BR-6452-01 15 75694249 75694249 A - SIN3A Frame_Shift_Del p.F490Lfs*5 0.33 TCGA-BR-6452-01 15 76016480 76016480 G A ODF3L1 5'UTR 0.19 TCGA-BR-6452-01 15 77348527 77348527 A G TSPAN3 Missense_Mutation p.F45S 0.19 deleterious(0.01) probably_damaging(0.916) TCGA-BR-6452-01 15 78582013 78582013 T C WDR61 Silent p.G170G 0.09 TCGA-BR-6452-01 15 78834954 78834954 T C PSMA4 Missense_Mutation p.V59A 0.12 tolerated(0.75) benign(0.011) TCGA-BR-6452-01 15 78837210 78837210 G T PSMA4 Splice_Site p.X96_splice 0.11 TCGA-BR-6452-01 15 78841185 78841185 A G PSMA4 Missense_Mutation p.K229E 0.26 tolerated(0.52) benign(0) TCGA-BR-6452-01 15 78922159 78922159 T C CHRNB4 Missense_Mutation p.D163G 0.26 deleterious(0) probably_damaging(0.996) TCGA-BR-6452-01 15 79748674 79748674 C T KIAA1024 Missense_Mutation p.A62V 0.09 deleterious(0) probably_damaging(0.998) TCGA-BR-6452-01 15 79749496 79749496 C T KIAA1024 Missense_Mutation p.A336V 0.08 tolerated(0.13) probably_damaging(0.979) TCGA-BR-6452-01 15 80137564 80137564 C T ST20-MTHFS Silent p.S176S 0.16 TCGA-BR-6452-01 15 81625366 81625366 T - TMC3 Frame_Shift_Del p.K899Nfs*3 0.11 TCGA-BR-6452-01 15 81650613 81650613 A G TMC3 Missense_Mutation p.V207A 0.07 tolerated(0.2) benign(0.414) TCGA-BR-6452-01 15 82336468 82336468 A G MEX3B Missense_Mutation p.V248A 0.10 deleterious(0.01) benign(0.053) TCGA-BR-6452-01 15 82575356 82575356 G A FAM154B Missense_Mutation p.G384S 0.14 deleterious(0) probably_damaging(0.984) TCGA-BR-6452-01 15 83240228 83240228 G A CPEB1 Missense_Mutation p.A82V 0.07 deleterious_low_confidence(0.03) benign(0.165) TCGA-BR-6452-01 15 83455681 83455682 GT - FSD2 Frame_Shift_Del p.H154Rfs*8 0.12 TCGA-BR-6452-01 15 83674354 83674354 T - C15orf40 Intron 0.10 TCGA-BR-6452-01 15 83677350 83677350 A T C15orf40 Missense_Mutation p.Y106N 0.08 deleterious(0) probably_damaging(0.994) TCGA-BR-6452-01 15 83805252 83805252 G A TM6SF1 Missense_Mutation p.G314D 0.08 deleterious(0) probably_damaging(0.965) TCGA-BR-6452-01 15 83931934 83931934 C A BNC1 Missense_Mutation p.R690M 0.11 deleterious(0.03) possibly_damaging(0.717) TCGA-BR-6452-01 15 85164124 85164124 G A ZSCAN2 Missense_Mutation p.R233Q 0.08 tolerated(0.48) probably_damaging(0.974) TCGA-BR-6452-01 15 85383526 85383526 G A ALPK3 Missense_Mutation p.R541H 0.23 tolerated(1) benign(0.001) TCGA-BR-6452-01 15 85383680 85383680 C A ALPK3 Silent p.A592A 0.37 TCGA-BR-6452-01 15 85399886 85399886 G A ALPK3 Silent p.T841T 0.28 TCGA-BR-6452-01 15 85659309 85659309 G A PDE8A Nonsense_Mutation p.W498* 0.09 TCGA-BR-6452-01 15 86122596 86122596 C T AKAP13 Missense_Mutation p.P433S 0.09 tolerated_low_confidence(0.17) benign(0.023) TCGA-BR-6452-01 15 88678533 88678533 A G NTRK3 Missense_Mutation p.W335R 0.11 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 15 88726694 88726694 C G NTRK3 Missense_Mutation p.S117T 0.06 tolerated(0.37) benign(0.004) TCGA-BR-6452-01 15 89844640 89844640 T C FANCI Silent p.S991S 0.13 TCGA-BR-6452-01 15 89864450 89864450 G A POLG Silent p.A880A 0.24 TCGA-BR-6452-01 15 89871936 89871936 C T POLG Missense_Mutation p.D384N 0.06 deleterious(0.03) probably_damaging(1) TCGA-BR-6452-01 15 89872222 89872222 G - POLG Frame_Shift_Del p.T326Qfs*39 0.12 TCGA-BR-6452-01 15 90276280 90276280 C T WDR93 Silent p.C458C 0.08 TCGA-BR-6452-01 15 90344794 90344794 G A ANPEP Silent p.D538D 0.20 TCGA-BR-6452-01 15 90349552 90349552 G A ANPEP Missense_Mutation p.T88M 0.14 tolerated(0.08) benign(0.16) TCGA-BR-6452-01 15 90802126 90802126 T C TTLL13 Missense_Mutation p.L440P 0.13 deleterious(0) possibly_damaging(0.697) TCGA-BR-6452-01 15 90902116 90902116 G A ZNF774 Silent p.E46E 0.13 TCGA-BR-6452-01 15 91430451 91430451 G A FES Silent p.V173V 0.21 TCGA-BR-6452-01 15 91436381 91436381 C T FES Silent p.C626C 0.20 TCGA-BR-6452-01 15 91436956 91436956 A T FES Silent p.R706R 0.10 TCGA-BR-6452-01 15 91456571 91456571 G A MAN2A2 Missense_Mutation p.A885T 0.11 tolerated(0.07) benign(0.012) TCGA-BR-6452-01 15 91496278 91496278 T C UNC45A Splice_Site p.X807_splice 0.08 TCGA-BR-6452-01 15 91504966 91504966 C A RCCD1 Silent p.T366T 0.17 TCGA-BR-6452-01 15 91505010 91505010 T C RCCD1 3'UTR 0.19 TCGA-BR-6452-01 15 92981597 92981597 A G ST8SIA2 Missense_Mutation p.K102R 0.06 benign(0.011) TCGA-BR-6452-01 15 93015547 93015547 A T C15orf32 Missense_Mutation p.M57L 0.08 tolerated_low_confidence(1) benign(0) TCGA-BR-6452-01 15 93015736 93015736 A G C15orf32 Missense_Mutation p.N120D 0.06 tolerated_low_confidence(0.2) possibly_damaging(0.801) TCGA-BR-6452-01 15 93277269 93277269 C T RP11-386M24.4 RNA 0.11 TCGA-BR-6452-01 15 93482927 93482927 G A CHD2 Missense_Mutation p.R224Q 0.12 deleterious(0) possibly_damaging(0.895) TCGA-BR-6452-01 15 99669820 99669820 G A SYNM Missense_Mutation p.V418I 0.23 tolerated(0.27) benign(0.006) TCGA-BR-6452-01 15 99669830 99669830 A - SYNM Frame_Shift_Del p.T422Pfs*13 0.07 TCGA-BR-6452-01 16 10846529 10846529 A G NUBP1 Silent p.G107G 0.08 TCGA-BR-6452-01 16 11001075 11001075 G A CIITA Missense_Mutation p.A576T 0.29 tolerated(1) benign(0.006) TCGA-BR-6452-01 16 11217761 11217761 G T CLEC16A Missense_Mutation p.G811C 0.16 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 16 1129571 1129571 G A SSTR5 Missense_Mutation p.V235M 0.24 deleterious(0.01) possibly_damaging(0.833) TCGA-BR-6452-01 16 12450122 12450122 G A SNX29 Missense_Mutation p.D629N 0.35 tolerated(0.16) probably_damaging(0.999) TCGA-BR-6452-01 16 1250495 1250495 G A CACNA1H Missense_Mutation p.R348H 0.10 tolerated(0.15) probably_damaging(0.998) TCGA-BR-6452-01 16 1260939 1260939 G A CACNA1H Silent p.V1397V 0.09 TCGA-BR-6452-01 16 12758698 12758698 A - CPPED1 3'UTR 0.28 TCGA-BR-6452-01 16 14020418 14020418 G A ERCC4 Missense_Mutation p.G130D 0.08 deleterious(0) probably_damaging(0.957) TCGA-BR-6452-01 16 142647 142647 A G NPRL3 Silent p.L370L 0.08 TCGA-BR-6452-01 16 14403166 14403167 - G MIR365A RNA 0.10 TCGA-BR-6452-01 16 14951484 14951484 C T NOMO1 Missense_Mutation p.P398S 0.13 tolerated(0.05) possibly_damaging(0.641) TCGA-BR-6452-01 16 15026682 15026682 C T NPIPA1 5'Flank 0.12 TCGA-BR-6452-01 16 15131997 15131997 A T NTAN1 Nonsense_Mutation p.L275* 0.31 TCGA-BR-6452-01 16 15180276 15180276 A G RRN3 Silent p.R96R 0.09 TCGA-BR-6452-01 16 1584270 1584270 G A TMEM204 5'UTR 0.09 TCGA-BR-6452-01 16 15961258 15961258 T C FOPNL 3'UTR 0.28 TCGA-BR-6452-01 16 15978038 15978038 T - FOPNL Frame_Shift_Del p.K18Rfs*4 0.19 TCGA-BR-6452-01 16 16139870 16139870 G A ABCC1 Silent p.K406K 0.14 TCGA-BR-6452-01 16 16208879 16208879 G A ABCC1 Silent p.T1112T 0.09 TCGA-BR-6452-01 16 16257015 16257015 C T ABCC6 Missense_Mutation p.R1114H 0.17 deleterious(0.01) probably_damaging(0.993) TCGA-BR-6452-01 16 16302603 16302603 T C ABCC6 Missense_Mutation p.N259S 0.08 tolerated(0.4) benign(0.001) TCGA-BR-6452-01 16 17228514 17228514 A G XYLT1 Missense_Mutation p.Y615H 0.10 tolerated(0.72) benign(0.33) TCGA-BR-6452-01 16 1840991 1840991 G A IGFALS Silent p.D514D 0.24 TCGA-BR-6452-01 16 18542829 18542829 A G NOMO2 Missense_Mutation p.V499A 0.09 tolerated(0.18) benign(0.014) TCGA-BR-6452-01 16 18602471 18602471 G T ABCC6P1 RNA 0.09 TCGA-BR-6452-01 16 18804531 18804531 G T ARL6IP1 3'UTR 0.12 TCGA-BR-6452-01 16 18806808 18806808 A C ARL6IP1 Missense_Mutation p.L129R 0.11 deleterious(0.04) benign(0.368) TCGA-BR-6452-01 16 18847478 18847478 A G SMG1 Silent p.L2612L 0.26 TCGA-BR-6452-01 16 18896923 18896923 A G SMG1 Silent p.C296C 0.14 TCGA-BR-6452-01 16 19126815 19126815 G T ITPRIPL2 Missense_Mutation p.E344D 0.11 tolerated(0.45) probably_damaging(0.973) TCGA-BR-6452-01 16 19195180 19195180 G A SYT17 Missense_Mutation p.R221H 0.24 deleterious(0.01) possibly_damaging(0.652) TCGA-BR-6452-01 16 19627476 19627476 A G C16orf62 Missense_Mutation p.N444S 0.09 tolerated(0.73) benign(0.004) TCGA-BR-6452-01 16 19680566 19680566 A T C16orf62 Missense_Mutation p.E858V 0.14 deleterious(0) benign(0.124) TCGA-BR-6452-01 16 19710844 19710844 G A C16orf62 Silent p.S978S 0.14 TCGA-BR-6452-01 16 20386160 20386160 A G PDILT Missense_Mutation p.V222A 0.08 deleterious(0.04) possibly_damaging(0.559) TCGA-BR-6452-01 16 20851156 20851156 T A AC004381.6 Missense_Mutation p.V488D 0.10 tolerated(0.63) benign(0.001) TCGA-BR-6452-01 16 20975196 20975196 G A DNAH3 Missense_Mutation p.T3337M 0.24 deleterious(0.02) benign(0.006) TCGA-BR-6452-01 16 21031117 21031117 G A DNAH3 Missense_Mutation p.L1951F 0.10 deleterious(0.02) benign(0.38) TCGA-BR-6452-01 16 21086796 21086796 G A DNAH3 Missense_Mutation p.T1019M 0.21 tolerated(0.12) benign(0.003) TCGA-BR-6452-01 16 2147934 2147934 C T PKD1 Missense_Mutation p.D3368N 0.24 benign(0.117) TCGA-BR-6452-01 16 2160411 2160411 T A PKD1 Missense_Mutation p.D1586V 0.10 probably_damaging(0.995) TCGA-BR-6452-01 16 21716417 21716417 T C OTOA Intron 0.08 TCGA-BR-6452-01 16 22335840 22335840 T C POLR3E Missense_Mutation p.V382A 0.09 deleterious(0.01) benign(0.048) TCGA-BR-6452-01 16 22447094 22447095 - T RRN3P3 RNA 0.10 TCGA-BR-6452-01 16 22558294 22558294 C T RP11-368J21.3 RNA 0.11 TCGA-BR-6452-01 16 22826303 22826303 G - HS3ST2 Frame_Shift_Del p.G126Afs*39 0.46 TCGA-BR-6452-01 16 22926539 22926539 G A HS3ST2 Missense_Mutation p.V254M 0.28 deleterious(0) possibly_damaging(0.75) TCGA-BR-6452-01 16 23079803 23079803 C A USP31 Missense_Mutation p.S1208I 0.10 deleterious_low_confidence(0) benign(0.229) TCGA-BR-6452-01 16 23079919 23079919 G A USP31 Silent p.S1169S 0.11 TCGA-BR-6452-01 16 23208672 23208672 A G SCNN1G Missense_Mutation p.Q334R 0.09 deleterious(0.01) benign(0.443) TCGA-BR-6452-01 16 23223385 23223385 A G SCNN1G Missense_Mutation p.M403V 0.08 deleterious(0.01) possibly_damaging(0.796) TCGA-BR-6452-01 16 2333349 2333349 G C ABCA3 Nonsense_Mutation p.Y1291* 0.16 TCGA-BR-6452-01 16 23366710 23366710 A G SCNN1B Missense_Mutation p.I226V 0.10 deleterious(0.04) benign(0.12) TCGA-BR-6452-01 16 23383173 23383173 A G SCNN1B Missense_Mutation p.Y374C 0.07 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 16 23607444 23607444 C A NDUFAB1 Missense_Mutation p.Q56H 0.21 deleterious(0) possibly_damaging(0.77) TCGA-BR-6452-01 16 23652818 23652818 G A DCTN5 5'UTR 0.15 TCGA-BR-6452-01 16 24192144 24192144 T C PRKCB Silent p.S476S 0.24 TCGA-BR-6452-01 16 24581095 24581095 G A RBBP6 Silent p.V1028V 0.23 TCGA-BR-6452-01 16 24919375 24919375 T G SLC5A11 Missense_Mutation p.S453A 0.15 tolerated(0.22) benign(0.008) TCGA-BR-6452-01 16 24922695 24922695 G A SLC5A11 Nonsense_Mutation p.W623* 0.08 TCGA-BR-6452-01 16 24955129 24955129 T C ARHGAP17 Silent p.E432E 0.10 TCGA-BR-6452-01 16 27374122 27374122 T G IL4R Silent p.T483T 0.29 TCGA-BR-6452-01 16 27454346 27454346 G A IL21R Missense_Mutation p.R139H 0.16 tolerated(0.14) benign(0.03) TCGA-BR-6452-01 16 27518381 27518382 TC - GTF3C1 Frame_Shift_Del p.K447Gfs*22 0.12 TCGA-BR-6452-01 16 2752389 2752389 C T KCTD5 Silent p.N195N 0.18 TCGA-BR-6452-01 16 27689178 27689178 G A KIAA0556 Silent p.V223V 0.11 TCGA-BR-6452-01 16 27761012 27761012 C T KIAA0556 Missense_Mutation p.R911W 0.12 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 16 2812491 2812491 A G SRRM2 Silent p.R654R 0.07 TCGA-BR-6452-01 16 2814127 2814127 C T SRRM2 Silent p.L1200L 0.20 TCGA-BR-6452-01 16 28604874 28604874 G A SULT1A2 Missense_Mutation p.R130C 0.21 deleterious(0) possibly_damaging(0.864) TCGA-BR-6452-01 16 28844557 28844557 G A ATXN2L Missense_Mutation p.A613T 0.19 tolerated(0.31) benign(0.027) TCGA-BR-6452-01 16 28847720 28847720 G A ATXN2L Silent p.P1071P 0.26 TCGA-BR-6452-01 16 28916347 28916347 G A RABEP2 Missense_Mutation p.R543C 0.17 deleterious(0) probably_damaging(0.93) TCGA-BR-6452-01 16 28931258 28931258 A G RABEP2 Missense_Mutation p.I94T 0.15 deleterious(0.01) probably_damaging(0.928) TCGA-BR-6452-01 16 28995608 28995608 T C SPNS1 Silent p.S525S 0.17 TCGA-BR-6452-01 16 29376015 29376016 - A SNX29P2 RNA 0.14 TCGA-BR-6452-01 16 29825671 29825671 G A PRRT2 Silent p.Q299Q 0.08 TCGA-BR-6452-01 16 29891331 29891331 G T SEZ6L2 Missense_Mutation p.T476N 0.21 deleterious(0) possibly_damaging(0.598) TCGA-BR-6452-01 16 29990778 29990778 T C TAOK2 Missense_Mutation p.Y202H 0.11 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 16 30002499 30002499 G - TAOK2 3'Flank 0.18 TCGA-BR-6452-01 16 30017638 30017638 C T DOC2A Missense_Mutation p.G358R 0.20 deleterious(0) probably_damaging(0.994) TCGA-BR-6452-01 16 3016364 3016364 C - KREMEN2 Frame_Shift_Del p.P135Qfs*24 0.24 TCGA-BR-6452-01 16 30364358 30364358 G - CD2BP2 Frame_Shift_Del p.P325Lfs*58 0.14 TCGA-BR-6452-01 16 30364758 30364758 A G CD2BP2 Missense_Mutation p.S247P 0.08 tolerated(0.22) benign(0.002) TCGA-BR-6452-01 16 30409310 30409310 C - ZNF48 Frame_Shift_Del p.R249Dfs*43 0.41 TCGA-BR-6452-01 16 30507514 30507514 G A ITGAL Missense_Mutation p.D534N 0.08 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 16 30536163 30536163 T C ZNF768 Missense_Mutation p.E433G 0.12 deleterious_low_confidence(0) probably_damaging(0.939) TCGA-BR-6452-01 16 30734045 30734045 A C SRCAP Missense_Mutation p.S1290R 0.18 unknown(0) TCGA-BR-6452-01 16 30750183 30750183 G A SRCAP Missense_Mutation p.R2941Q 0.26 unknown(0) TCGA-BR-6452-01 16 30768329 30768329 C - PHKG2 Frame_Shift_Del p.P379Lfs*18 0.22 TCGA-BR-6452-01 16 30990644 30990644 G A SETD1A Silent p.P1179P 0.22 TCGA-BR-6452-01 16 30991034 30991035 - C SETD1A Frame_Shift_Ins p.A1312Cfs*22 0.22 TCGA-BR-6452-01 16 30998167 30998167 G - HSD3B7 Frame_Shift_Del p.L182Cfs*4 0.11 TCGA-BR-6452-01 16 31072650 31072650 C T ZNF668 Silent p.R556R 0.09 TCGA-BR-6452-01 16 31072971 31072971 C T ZNF668 Silent p.Q449Q 0.08 TCGA-BR-6452-01 16 31095491 31095491 C T PRSS53 Missense_Mutation p.A531T 0.20 tolerated(0.13) benign(0.017) TCGA-BR-6452-01 16 31142181 31142181 G A KAT8 Silent p.E424E 0.35 TCGA-BR-6452-01 16 31143846 31143846 G A PRSS8 Silent p.C203C 0.10 TCGA-BR-6452-01 16 31383731 31383731 C T ITGAX Silent p.T731T 0.11 TCGA-BR-6452-01 16 31485969 31485969 G A TGFB1I1 Missense_Mutation p.G202D 0.12 tolerated(0.27) probably_damaging(0.98) TCGA-BR-6452-01 16 3169666 3169666 C A ZNF205 Silent p.P335P 0.29 TCGA-BR-6452-01 16 3170039 3170039 C T ZNF205 Missense_Mutation p.R460C 0.09 deleterious(0.05) probably_damaging(0.941) TCGA-BR-6452-01 16 31927166 31927166 C T ZNF267 Silent p.F532F 0.13 TCGA-BR-6452-01 16 31927343 31927343 T C ZNF267 Silent p.L591L 0.16 TCGA-BR-6452-01 16 3254364 3254364 C A OR1F1 Missense_Mutation p.L40M 0.09 deleterious(0.04) probably_damaging(0.966) TCGA-BR-6452-01 16 336467 336467 A G PDIA2 Missense_Mutation p.K412E 0.11 tolerated(1) benign(0.062) TCGA-BR-6452-01 16 338080 338080 G A AXIN1 3'UTR 0.07 TCGA-BR-6452-01 16 3639952 3639953 - A SLX4 Frame_Shift_Ins p.L1229Ffs*12 0.19 TCGA-BR-6452-01 16 3656564 3656564 A G SLX4 Missense_Mutation p.L224S 0.09 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 16 3658541 3658541 C - SLX4 Frame_Shift_Del p.G142Vfs*52 0.23 TCGA-BR-6452-01 16 3658827 3658827 A G SLX4 Missense_Mutation p.S47P 0.10 tolerated(0.05) probably_damaging(0.997) TCGA-BR-6452-01 16 3778617 3778617 G A CREBBP Missense_Mutation p.A2144V 0.10 unknown(0) TCGA-BR-6452-01 16 4029168 4029168 G A ADCY9 Silent p.P876P 0.18 TCGA-BR-6452-01 16 4164493 4164493 A G ADCY9 Silent p.I317I 0.10 TCGA-BR-6452-01 16 4164997 4164997 C T ADCY9 Silent p.A149A 0.10 TCGA-BR-6452-01 16 4242609 4242609 C T SRL Missense_Mutation p.E323K 0.10 deleterious(0.02) possibly_damaging(0.866) TCGA-BR-6452-01 16 425133 425133 T A TMEM8A Missense_Mutation p.E480V 0.22 tolerated(0.15) benign(0.147) TCGA-BR-6452-01 16 4308190 4308190 C A TFAP4 Missense_Mutation p.A295S 0.25 deleterious_low_confidence(0.01) unknown(0) TCGA-BR-6452-01 16 4308199 4308199 G C TFAP4 Missense_Mutation p.Q292E 0.13 deleterious_low_confidence(0.03) unknown(0) TCGA-BR-6452-01 16 4409546 4409546 C T CORO7 Missense_Mutation p.V729M 0.16 deleterious(0.03) probably_damaging(1) TCGA-BR-6452-01 16 4438557 4438557 C T CORO7 Missense_Mutation p.G231R 0.20 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 16 46998641 46998641 A T DNAJA2 Missense_Mutation p.V219D 0.11 deleterious(0) probably_damaging(0.988) TCGA-BR-6452-01 16 47189555 47189555 T C ITFG1 3'UTR 0.12 TCGA-BR-6452-01 16 476618 476618 C - RAB11FIP3 Frame_Shift_Del p.R206Afs*34 0.20 TCGA-BR-6452-01 16 4815990 4815990 G T ZNF500 5'UTR 0.11 TCGA-BR-6452-01 16 48261759 48261759 G T ABCC11 Missense_Mutation p.P118H 0.10 tolerated(0.09) probably_damaging(0.996) TCGA-BR-6452-01 16 48381563 48381563 A T LONP2 Missense_Mutation p.E695V 0.11 deleterious(0) probably_damaging(0.958) TCGA-BR-6452-01 16 4847966 4847966 G A ROGDI Missense_Mutation p.A223V 0.17 deleterious(0.01) possibly_damaging(0.558) TCGA-BR-6452-01 16 4851560 4851560 C A ROGDI Silent p.P48P 0.23 TCGA-BR-6452-01 16 4908571 4908571 T C UBN1 Silent p.G113G 0.15 TCGA-BR-6452-01 16 49313459 49313459 C A CBLN1 Missense_Mutation p.Q146H 0.10 tolerated(0.07) probably_damaging(0.934) TCGA-BR-6452-01 16 4942192 4942192 C T PPL Missense_Mutation p.R558Q 0.11 tolerated(0.2) benign(0.002) TCGA-BR-6452-01 16 49670423 49670423 G A ZNF423 Silent p.D880D 0.11 TCGA-BR-6452-01 16 49671085 49671085 G A ZNF423 Missense_Mutation p.R660W 0.22 deleterious(0.04) possibly_damaging(0.889) TCGA-BR-6452-01 16 50326626 50326626 A G ADCY7 Missense_Mutation p.T193A 0.12 tolerated(0.73) benign(0.004) TCGA-BR-6452-01 16 50583381 50583381 A T NKD1 Missense_Mutation p.E36V 0.12 deleterious(0) probably_damaging(0.961) TCGA-BR-6452-01 16 50667258 50667258 A G NKD1 Missense_Mutation p.K327E 0.19 deleterious(0.03) probably_damaging(0.997) TCGA-BR-6452-01 16 53504299 53504299 T C RBL2 Silent p.I750I 0.11 TCGA-BR-6452-01 16 53675335 53675335 A G RPGRIP1L Silent p.V912V 0.12 TCGA-BR-6452-01 16 54145700 54145700 T A FTO Nonsense_Mutation p.L464* 0.08 TCGA-BR-6452-01 16 55518028 55518028 C T MMP2 Nonsense_Mutation p.R161* 0.22 TCGA-BR-6452-01 16 55532275 55532275 C T MMP2 Missense_Mutation p.P562S 0.19 tolerated(0.3) probably_damaging(0.994) TCGA-BR-6452-01 16 55719159 55719159 T G SLC6A2 Missense_Mutation p.F250C 0.09 deleterious(0) probably_damaging(0.987) TCGA-BR-6452-01 16 55903587 55903587 C T CES5A Missense_Mutation p.A192T 0.19 deleterious(0.05) possibly_damaging(0.674) TCGA-BR-6452-01 16 56501107 56501107 C T OGFOD1 Missense_Mutation p.R230C 0.21 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 16 56782236 56782236 T C NUP93 Missense_Mutation p.L26P 0.08 deleterious(0) probably_damaging(0.994) TCGA-BR-6452-01 16 56974002 56974002 T C HERPUD1 Silent p.G250G 0.10 TCGA-BR-6452-01 16 56995923 56995923 T C CETP Missense_Mutation p.L11P 0.12 deleterious(0) unknown(0) TCGA-BR-6452-01 16 57601918 57601918 G A GPR114 Silent p.A324A 0.22 TCGA-BR-6452-01 16 57722382 57722382 G A GPR97 3'UTR 0.12 TCGA-BR-6452-01 16 57790289 57790289 C A KATNB1 Silent p.T580T 0.07 TCGA-BR-6452-01 16 58031417 58031417 C T ZNF319 Silent p.T251T 0.14 TCGA-BR-6452-01 16 58550154 58550154 C T SETD6 Missense_Mutation p.A128V 0.10 deleterious(0) probably_damaging(0.969) TCGA-BR-6452-01 16 58712265 58712265 T C SLC38A7 Missense_Mutation p.R195G 0.11 deleterious(0) benign(0.131) TCGA-BR-6452-01 16 597774 597774 C T CAPN15 Silent p.A312A 0.27 TCGA-BR-6452-01 16 614329 614329 G A C16orf11 Silent p.E345E 0.19 TCGA-BR-6452-01 16 61687413 61687413 T G CDH8 3'UTR 0.20 TCGA-BR-6452-01 16 66424419 66424419 C T CDH5 Missense_Mutation p.R299W 0.21 deleterious(0.01) possibly_damaging(0.849) TCGA-BR-6452-01 16 66575795 66575795 G A TK2 Missense_Mutation p.A73V 0.11 tolerated(0.49) benign(0.018) TCGA-BR-6452-01 16 66764088 66764088 A G DYNC1LI2 Missense_Mutation p.L323S 0.08 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 16 67180991 67180991 C T C16orf70 Missense_Mutation p.P409L 0.16 tolerated(0.17) benign(0.076) TCGA-BR-6452-01 16 67181074 67181074 G A C16orf70 3'UTR 0.11 TCGA-BR-6452-01 16 67575891 67575891 G T FAM65A Missense_Mutation p.R421M 0.12 deleterious(0) probably_damaging(0.921) TCGA-BR-6452-01 16 67763897 67763897 G A RANBP10 Silent p.T314T 0.09 TCGA-BR-6452-01 16 67911221 67911221 G A EDC4 Missense_Mutation p.A185T 0.14 deleterious(0) probably_damaging(0.998) TCGA-BR-6452-01 16 67919655 67919655 C T NRN1L Missense_Mutation p.A37V 0.22 tolerated(0.16) unknown(0) TCGA-BR-6452-01 16 67964403 67964403 C A CTRL Missense_Mutation p.R136L 0.08 tolerated(0.65) benign(0.043) TCGA-BR-6452-01 16 67979673 67979673 C T SLC12A4 Silent p.E949E 0.11 TCGA-BR-6452-01 16 68014116 68014116 G T DPEP3 Silent p.T81T 0.12 TCGA-BR-6452-01 16 68338046 68338046 G A SLC7A6OS Silent p.R187R 0.12 TCGA-BR-6452-01 16 68373745 68373745 T C PRMT7 Silent p.F267F 0.07 TCGA-BR-6452-01 16 68712677 68712677 G A CDH3 Missense_Mutation p.A187T 0.11 deleterious(0) probably_damaging(0.998) TCGA-BR-6452-01 16 68857436 68857436 G A CDH1 Missense_Mutation p.A691T 0.09 tolerated(0.58) benign(0.001) TCGA-BR-6452-01 16 69279604 69279604 G A SNTB2 Missense_Mutation p.G227D 0.08 tolerated(0.06) probably_damaging(0.946) TCGA-BR-6452-01 16 69334808 69334808 G A SNTB2 Missense_Mutation p.R535H 0.09 deleterious(0) probably_damaging(0.997) TCGA-BR-6452-01 16 69727557 69727557 C T NFAT5 Nonsense_Mutation p.Q1277* 0.11 TCGA-BR-6452-01 16 70154527 70154527 G T PDPR Missense_Mutation p.Q44H 0.09 deleterious(0.01) benign(0.033) TCGA-BR-6452-01 16 701681 701681 G T WDR90 Silent p.P258P 0.17 TCGA-BR-6452-01 16 70286780 70286780 G A AARS Silent p.S917S 0.10 TCGA-BR-6452-01 16 70302259 70302259 C T AARS Missense_Mutation p.R329H 0.11 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 16 70350004 70350004 G A DDX19B Missense_Mutation p.R98Q 0.07 tolerated(0.33) benign(0.001) TCGA-BR-6452-01 16 70367574 70367574 A G DDX19B 3'UTR 0.11 TCGA-BR-6452-01 16 70429011 70429011 G T ST3GAL2 Missense_Mutation p.P136H 0.07 probably_damaging(0.997) TCGA-BR-6452-01 16 70588357 70588357 G A SF3B3 Missense_Mutation p.D471N 0.08 deleterious(0) probably_damaging(0.969) TCGA-BR-6452-01 16 70599416 70599416 T - SF3B3 Frame_Shift_Del p.L940Cfs*21 0.22 TCGA-BR-6452-01 16 70900215 70900215 C T HYDIN Silent p.P3776P 0.23 TCGA-BR-6452-01 16 71218785 71218785 C T HYDIN Missense_Mutation p.E82K 0.07 possibly_damaging(0.714) TCGA-BR-6452-01 16 71683225 71683225 C T PHLPP2 Silent p.E1180E 0.08 TCGA-BR-6452-01 16 717684 717684 A G WDR90 3'UTR 0.25 TCGA-BR-6452-01 16 71950395 71950395 T A IST1 Missense_Mutation p.I53N 0.10 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 16 72110871 72110871 C T HPR Missense_Mutation p.A313V 0.18 deleterious(0.01) probably_damaging(0.954) TCGA-BR-6452-01 16 72131586 72131586 T C DHX38 Silent p.D174D 0.14 TCGA-BR-6452-01 16 72153953 72153953 T C PMFBP1 Missense_Mutation p.E935G 0.06 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 16 72821778 72821778 A G ZFHX3 Missense_Mutation p.V3466A 0.10 unknown(0) TCGA-BR-6452-01 16 72828653 72828653 C T ZFHX3 Missense_Mutation p.R2643H 0.17 unknown(0) TCGA-BR-6452-01 16 72831787 72831787 A G ZFHX3 Silent p.C1598C 0.06 TCGA-BR-6452-01 16 72832395 72832395 G A ZFHX3 Missense_Mutation p.R1396C 0.12 probably_damaging(0.993) TCGA-BR-6452-01 16 74334090 74334090 C T PSMD7 Missense_Mutation p.S51L 0.17 deleterious(0) benign(0.019) TCGA-BR-6452-01 16 75675553 75675553 C T KARS Missense_Mutation p.S72N 0.07 tolerated(0.32) benign(0.003) TCGA-BR-6452-01 16 77227572 77227572 C T MON1B Missense_Mutation p.R125W 0.23 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 16 77228534 77228534 G A MON1B Missense_Mutation p.A260T 0.10 tolerated(0.37) benign(0.235) TCGA-BR-6452-01 16 77369677 77369677 T C ADAMTS18 Missense_Mutation p.Q612R 0.06 tolerated(1) benign(0.004) TCGA-BR-6452-01 16 77401590 77401590 A T ADAMTS18 Missense_Mutation p.F176I 0.09 deleterious(0) possibly_damaging(0.793) TCGA-BR-6452-01 16 81077197 81077197 G A ATMIN Missense_Mutation p.S365N 0.12 tolerated(0.05) benign(0.049) TCGA-BR-6452-01 16 81211477 81211477 A G PKD1L2 Intron 0.08 TCGA-BR-6452-01 16 81733378 81733378 C T CMIP Missense_Mutation p.A576V 0.23 deleterious(0) probably_damaging(0.994) TCGA-BR-6452-01 16 81891910 81891910 A G PLCG2 Missense_Mutation p.K127R 0.07 tolerated(0.61) benign(0.001) TCGA-BR-6452-01 16 822937 822937 C T MSLNL Missense_Mutation p.V750I 0.18 possibly_damaging(0.729) TCGA-BR-6452-01 16 823198 823198 G A MSLNL Silent p.N690N 0.11 TCGA-BR-6452-01 16 83704437 83704437 A G CDH13 Missense_Mutation p.N429D 0.22 deleterious(0) probably_damaging(0.997) TCGA-BR-6452-01 16 83998695 83998695 G A OSGIN1 Missense_Mutation p.G173R 0.19 tolerated(0.15) probably_damaging(0.975) TCGA-BR-6452-01 16 84050247 84050247 G A SLC38A8 Missense_Mutation p.R347W 0.22 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 16 84101321 84101321 A G MBTPS1 Missense_Mutation p.Y727H 0.10 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 16 84103626 84103626 T C MBTPS1 Silent p.E600E 0.08 TCGA-BR-6452-01 16 84213650 84213651 - G TAF1C Frame_Shift_Ins p.Q534Pfs*19 0.29 TCGA-BR-6452-01 16 84214743 84214743 G A TAF1C Missense_Mutation p.S431L 0.16 deleterious(0.05) benign(0.111) TCGA-BR-6452-01 16 84351925 84351925 G T WFDC1 Missense_Mutation p.G129C 0.15 deleterious(0) probably_damaging(0.978) TCGA-BR-6452-01 16 84474490 84474490 G T ATP2C2 Missense_Mutation p.G413W 0.13 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 16 86545019 86545019 G A FOXF1 Missense_Mutation p.A282T 0.40 tolerated(0.07) benign(0.009) TCGA-BR-6452-01 16 86601011 86601011 T C FOXC2 Missense_Mutation p.Y24H 0.15 deleterious(0) probably_damaging(0.994) TCGA-BR-6452-01 16 86612547 86612547 A G FOXL1 Missense_Mutation p.N73S 0.08 tolerated(0.55) possibly_damaging(0.56) TCGA-BR-6452-01 16 87866455 87866455 G A SLC7A5 3'UTR 0.24 TCGA-BR-6452-01 16 87871474 87871474 G A SLC7A5 Missense_Mutation p.P373S 0.16 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 16 88697554 88697554 G A ZC3H18 Silent p.T903T 0.24 TCGA-BR-6452-01 16 88923569 88923569 G A TRAPPC2L Missense_Mutation p.C4Y 0.14 deleterious(0) possibly_damaging(0.836) TCGA-BR-6452-01 16 8900242 8900242 A G PMM2 Missense_Mutation p.K109E 0.13 tolerated(0.53) benign(0.095) TCGA-BR-6452-01 16 89294580 89294580 A G ZNF778 Silent p.T600T 0.07 TCGA-BR-6452-01 16 89764584 89764584 C - SPATA2L Frame_Shift_Del p.A145Pfs*172 0.09 TCGA-BR-6452-01 16 89764596 89764596 C A SPATA2L Missense_Mutation p.A141S 0.12 tolerated(0.81) benign(0.032) TCGA-BR-6452-01 16 89776229 89776229 T C VPS9D1 Silent p.E448E 0.09 TCGA-BR-6452-01 16 89836392 89836392 G A FANCA Missense_Mutation p.A786V 0.22 tolerated(0.07) possibly_damaging(0.483) TCGA-BR-6452-01 16 89865524 89865524 G A FANCA Intron 0.10 TCGA-BR-6452-01 16 8988948 8988948 C T USP7 Silent p.A993A 0.08 TCGA-BR-6452-01 16 89940110 89940110 A G TCF25 Missense_Mutation p.E12G 0.28 deleterious(0.02) unknown(0) TCGA-BR-6452-01 16 89977618 89977618 A G TCF25 Missense_Mutation p.D668G 0.18 tolerated(0.05) benign(0.002) TCGA-BR-6452-01 16 90029779 90029779 C A DEF8 Silent p.R371R 0.25 TCGA-BR-6452-01 16 90099232 90099232 G A GAS8 Missense_Mutation p.R132H 0.22 tolerated(0.58) benign(0.003) TCGA-BR-6452-01 16 90161817 90161817 G A TUBB8P7 RNA 0.17 TCGA-BR-6452-01 16 9857380 9857380 T - GRIN2A Frame_Shift_Del p.S1341Afs*56 0.21 TCGA-BR-6452-01 17 10261071 10261071 T C MYH13 Missense_Mutation p.N240S 0.09 deleterious(0) probably_damaging(0.982) TCGA-BR-6452-01 17 10322295 10322295 T C MYH8 Missense_Mutation p.D88G 0.13 deleterious(0) possibly_damaging(0.76) TCGA-BR-6452-01 17 10323492 10323492 T C MYH8 Missense_Mutation p.Y18C 0.09 deleterious(0) possibly_damaging(0.744) TCGA-BR-6452-01 17 10358102 10358102 T A MYH4 Missense_Mutation p.N821Y 0.10 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 17 10398373 10398373 C T MYH1 Missense_Mutation p.A1781T 0.07 deleterious(0.04) benign(0.05) TCGA-BR-6452-01 17 10402051 10402051 T C MYH1 Missense_Mutation p.K1358R 0.08 deleterious(0.03) probably_damaging(0.999) TCGA-BR-6452-01 17 10448771 10448771 G T MYH2 Missense_Mutation p.P133T 0.06 deleterious(0.01) probably_damaging(0.989) TCGA-BR-6452-01 17 10728777 10728777 G A PIRT Silent p.G62G 0.23 TCGA-BR-6452-01 17 11554567 11554567 T C DNAH9 Missense_Mutation p.L760S 0.10 probably_damaging(1) TCGA-BR-6452-01 17 11572398 11572398 A G DNAH9 Missense_Mutation p.T917A 0.22 benign(0) TCGA-BR-6452-01 17 1257558 1257560 ATG - YWHAE In_Frame_Del p.I220del 0.08 TCGA-BR-6452-01 17 14204913 14204913 G A HS3ST3B1 Silent p.P26P 0.18 TCGA-BR-6452-01 17 14683188 14683188 A G AC005863.1 Intron 0.10 TCGA-BR-6452-01 17 1579343 1579343 T C PRPF8 Missense_Mutation p.K853R 0.08 deleterious(0.03) benign(0.15) TCGA-BR-6452-01 17 15906111 15906111 C T TTC19 Missense_Mutation p.A143V 0.11 deleterious(0) probably_damaging(0.928) TCGA-BR-6452-01 17 16022749 16022749 C T NCOR1 Missense_Mutation p.V635I 0.07 benign(0.012) TCGA-BR-6452-01 17 16024445 16024445 G A NCOR1 Silent p.N591N 0.07 TCGA-BR-6452-01 17 16075115 16075115 A G NCOR1 Splice_Site p.X145_splice 0.20 TCGA-BR-6452-01 17 16246220 16246220 G A CENPV Missense_Mutation p.R244W 0.12 deleterious(0) possibly_damaging(0.459) TCGA-BR-6452-01 17 16335120 16335120 G A TRPV2 Missense_Mutation p.R537H 0.29 deleterious(0.05) benign(0.21) TCGA-BR-6452-01 17 16527226 16527226 A T ZNF624 Missense_Mutation p.I325N 0.08 deleterious(0.01) probably_damaging(0.998) TCGA-BR-6452-01 17 16612506 16612506 C T CCDC144A Missense_Mutation p.P379S 0.12 tolerated(1) possibly_damaging(0.857) TCGA-BR-6452-01 17 16691360 16691360 C A CCDC144A 3'UTR 0.07 TCGA-BR-6452-01 17 16705686 16705686 C T CCDC144A 3'UTR 0.13 TCGA-BR-6452-01 17 16735072 16735072 C T KRT16P2 RNA 0.08 TCGA-BR-6452-01 17 16831013 16831013 C T TBC1D27 RNA 0.30 TCGA-BR-6452-01 17 17179427 17179427 G A COPS3 Missense_Mutation p.A36V 0.31 tolerated(0.6) benign(0.002) TCGA-BR-6452-01 17 17412796 17412796 T C PEMT Missense_Mutation p.N177S 0.08 tolerated(0.16) probably_damaging(0.994) TCGA-BR-6452-01 17 17721053 17721053 C T SREBF1 Missense_Mutation p.G484D 0.20 tolerated(0.07) possibly_damaging(0.786) TCGA-BR-6452-01 17 1782983 1782983 G - RPA1 Frame_Shift_Del p.E363Kfs*60 0.15 TCGA-BR-6452-01 17 17887240 17887240 G A LRRC48 Missense_Mutation p.A87T 0.12 tolerated(0.52) benign(0.001) TCGA-BR-6452-01 17 18039118 18039118 G A MYO15A Missense_Mutation p.A1526T 0.21 unknown(0) TCGA-BR-6452-01 17 18082167 18082167 G A MYO15A Missense_Mutation p.E3526K 0.14 unknown(0) TCGA-BR-6452-01 17 18143909 18143909 A G LLGL1 Missense_Mutation p.T742A 0.08 deleterious(0) benign(0.403) TCGA-BR-6452-01 17 18181545 18181545 G - TOP3A Frame_Shift_Del p.R758Gfs*15 0.28 TCGA-BR-6452-01 17 18188810 18188810 T C TOP3A Missense_Mutation p.H541R 0.12 deleterious(0) probably_damaging(0.977) TCGA-BR-6452-01 17 18205934 18205934 G A TOP3A Silent p.S201S 0.16 TCGA-BR-6452-01 17 18566378 18566378 A G ZNF286B Silent p.S147S 0.12 TCGA-BR-6452-01 17 18638407 18638407 C T TRIM16L Silent p.G227G 0.09 TCGA-BR-6452-01 17 18874741 18874741 G A FAM83G Silent p.G801G 0.10 TCGA-BR-6452-01 17 18881506 18881506 G A FAM83G Silent p.N491N 0.15 TCGA-BR-6452-01 17 19237382 19237382 C T EPN2 Missense_Mutation p.P581S 0.19 tolerated(0.27) benign(0.005) TCGA-BR-6452-01 17 19246577 19246577 C A B9D1 3'UTR 0.11 TCGA-BR-6452-01 17 19319055 19319055 T A RNF112 Missense_Mutation p.V488D 0.15 deleterious(0) probably_damaging(0.972) TCGA-BR-6452-01 17 19470491 19470491 G A SLC47A1 Missense_Mutation p.G420D 0.08 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 17 19679710 19679710 A G ULK2 Silent p.S1021S 0.16 TCGA-BR-6452-01 17 19827780 19827780 C G AKAP10 Silent p.A564A 0.14 TCGA-BR-6452-01 17 20135555 20135555 A T SPECC1 Missense_Mutation p.T730S 0.06 deleterious(0) probably_damaging(0.997) TCGA-BR-6452-01 17 20406434 20406434 C T RP11-434D2.7 3'Flank 0.10 TCGA-BR-6452-01 17 25630468 25630469 - A WSB1 Frame_Shift_Ins p.N97Kfs*2 0.08 TCGA-BR-6452-01 17 25969290 25969290 G A LGALS9 Silent p.V120V 0.12 TCGA-BR-6452-01 17 2604436 2604436 T C CLUH Silent p.K303K 0.21 TCGA-BR-6452-01 17 2605316 2605316 G A CLUH Missense_Mutation p.R133C 0.19 deleterious(0) probably_damaging(0.998) TCGA-BR-6452-01 17 26449711 26449711 A G NLK Missense_Mutation p.R181G 0.09 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 17 26449740 26449740 T - NLK Frame_Shift_Del p.F192Lfs*30 0.31 TCGA-BR-6452-01 17 26966990 26966990 T C KIAA0100 Missense_Mutation p.D315G 0.08 tolerated(0.08) benign(0.289) TCGA-BR-6452-01 17 26970214 26970214 A C KIAA0100 Missense_Mutation p.F122V 0.16 tolerated(1) benign(0.002) TCGA-BR-6452-01 17 27061177 27061177 C T NEK8 Missense_Mutation p.A75V 0.06 tolerated(0.13) possibly_damaging(0.688) TCGA-BR-6452-01 17 27076177 27076177 G A TRAF4 Missense_Mutation p.C332Y 0.18 deleterious(0.01) benign(0.158) TCGA-BR-6452-01 17 27400760 27400760 G - TIAF1 3'UTR 0.10 TCGA-BR-6452-01 17 27400906 27400906 G A TIAF1 Silent p.D104D 0.07 TCGA-BR-6452-01 17 27794194 27794194 C T TAOK1 Missense_Mutation p.A55V 0.09 deleterious(0) possibly_damaging(0.778) TCGA-BR-6452-01 17 27818822 27818822 T C TAOK1 Missense_Mutation p.F257S 0.06 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 17 27818871 27818871 G T TAOK1 Missense_Mutation p.E273D 0.07 tolerated(0.59) benign(0.002) TCGA-BR-6452-01 17 27844497 27844498 - A TAOK1 Frame_Shift_Ins p.E580Rfs*23 0.11 TCGA-BR-6452-01 17 27939735 27939735 G A ANKRD13B Missense_Mutation p.G493S 0.10 tolerated(0.05) possibly_damaging(0.894) TCGA-BR-6452-01 17 27959499 27959499 G A SSH2 Missense_Mutation p.R878W 0.23 deleterious_low_confidence(0) probably_damaging(1) TCGA-BR-6452-01 17 28538348 28538348 C T SLC6A4 Silent p.T433T 0.26 TCGA-BR-6452-01 17 2867364 2867364 T C RAP1GAP2 Splice_Site p.X164_splice 0.13 TCGA-BR-6452-01 17 28712243 28712243 A G CPD Missense_Mutation p.Y328C 0.08 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 17 28712247 28712247 T C CPD Silent p.D329D 0.09 TCGA-BR-6452-01 17 28791791 28791791 A G CPD Missense_Mutation p.T1368A 0.07 deleterious_low_confidence(0.01) possibly_damaging(0.472) TCGA-BR-6452-01 17 29283258 29283258 G T ADAP2 Splice_Site p.X295_splice 0.12 TCGA-BR-6452-01 17 3030672 3030672 G - OR1G1 Frame_Shift_Del p.M59Cfs*5 0.08 TCGA-BR-6452-01 17 30348561 30348561 A G LRRC37B Silent p.P132P 0.20 TCGA-BR-6452-01 17 30348993 30348993 G A LRRC37B Silent p.Q276Q 0.13 TCGA-BR-6452-01 17 30349701 30349701 G C LRRC37B Missense_Mutation p.Q512H 0.26 deleterious(0.02) possibly_damaging(0.781) TCGA-BR-6452-01 17 30662406 30662406 A G C17orf75 Missense_Mutation p.V202A 0.14 tolerated(0.51) benign(0.102) TCGA-BR-6452-01 17 30692444 30692444 A T ZNF207 Missense_Mutation p.T256S 0.14 tolerated(0.62) benign(0.105) TCGA-BR-6452-01 17 3195465 3195465 G A OR3A1 Missense_Mutation p.R138C 0.16 tolerated(0.18) benign(0.017) TCGA-BR-6452-01 17 32582352 32582352 G A CCL2 5'UTR 0.11 TCGA-BR-6452-01 17 32646550 32646550 G A CCL8 Silent p.L10L 0.14 TCGA-BR-6452-01 17 32959781 32959781 A G TMEM132E Missense_Mutation p.N424S 0.08 tolerated(0.17) benign(0.093) TCGA-BR-6452-01 17 33266714 33266714 A G CCT6B Silent p.G329G 0.09 TCGA-BR-6452-01 17 33680045 33680045 T C SLFN11 Missense_Mutation p.D679G 0.06 deleterious(0.04) possibly_damaging(0.622) TCGA-BR-6452-01 17 33680106 33680106 A G SLFN11 Missense_Mutation p.F659L 0.10 deleterious(0.01) benign(0.133) TCGA-BR-6452-01 17 34073121 34073121 G A GAS2L2 Silent p.A465A 0.10 TCGA-BR-6452-01 17 34190103 34190103 C - C17orf66 Frame_Shift_Del p.A218Lfs*6 0.10 TCGA-BR-6452-01 17 35601597 35601597 G A ACACA Silent p.G883G 0.14 TCGA-BR-6452-01 17 35766383 35766383 A G ACACA Missense_Mutation p.W3R 0.10 deleterious_low_confidence(0) unknown(0) TCGA-BR-6452-01 17 35986896 35986896 C T DDX52 Silent p.V290V 0.11 TCGA-BR-6452-01 17 3656663 3656663 T A ITGAE Missense_Mutation p.D530V 0.08 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 17 3660314 3660314 G A ITGAE Silent p.L379L 0.12 TCGA-BR-6452-01 17 36865786 36865786 C T MLLT6 Silent p.N170N 0.10 TCGA-BR-6452-01 17 36895090 36895090 C T PCGF2 Missense_Mutation p.R114H 0.11 deleterious(0.02) benign(0.022) TCGA-BR-6452-01 17 37243861 37243861 C T PLXDC1 Silent p.P302P 0.27 TCGA-BR-6452-01 17 37455285 37455285 A T FBXL20 Nonsense_Mutation p.L96* 0.11 TCGA-BR-6452-01 17 37565253 37565253 A G MED1 Missense_Mutation p.V1074A 0.12 tolerated_low_confidence(1) benign(0.423) TCGA-BR-6452-01 17 37566692 37566692 G A MED1 Silent p.D594D 0.10 TCGA-BR-6452-01 17 38078664 38078664 G - ORMDL3 3'UTR 0.14 TCGA-BR-6452-01 17 38142913 38142913 A G PSMD3 Missense_Mutation p.Y166C 0.11 deleterious(0) probably_damaging(0.998) TCGA-BR-6452-01 17 38643669 38643669 A T TNS4 Missense_Mutation p.S303T 0.14 tolerated(0.19) benign(0.094) TCGA-BR-6452-01 17 38818272 38818272 T - KRT222 Frame_Shift_Del p.M41Wfs*8 0.24 TCGA-BR-6452-01 17 38859802 38859802 G A KRT24 Silent p.S48S 0.17 TCGA-BR-6452-01 17 38907439 38907439 G A KRT25 Missense_Mutation p.A270V 0.26 tolerated(0.07) benign(0.081) TCGA-BR-6452-01 17 38953225 38953225 G A KRT28 Silent p.T307T 0.15 TCGA-BR-6452-01 17 39036904 39036904 T C KRT20 Missense_Mutation p.N198D 0.10 deleterious(0.01) benign(0.324) TCGA-BR-6452-01 17 39114826 39114826 G A KRT39 3'UTR 0.09 TCGA-BR-6452-01 17 39114896 39114896 T A KRT39 Missense_Mutation p.E478V 0.10 deleterious(0) probably_damaging(0.927) TCGA-BR-6452-01 17 39122754 39122754 G A KRT39 Nonsense_Mutation p.R119* 0.06 TCGA-BR-6452-01 17 39137109 39137109 G A KRT40 Silent p.C301C 0.20 TCGA-BR-6452-01 17 39503440 39503440 C T KRT33A Missense_Mutation p.R208H 0.19 deleterious(0.03) benign(0.262) TCGA-BR-6452-01 17 39506948 39506948 G - KRT33A Frame_Shift_Del p.S25Afs*17 0.31 TCGA-BR-6452-01 17 39535677 39535677 G A KRT34 Silent p.C310C 0.13 TCGA-BR-6452-01 17 39623459 39623459 A G KRT32 Missense_Mutation p.V40A 0.16 tolerated(0.63) benign(0.079) TCGA-BR-6452-01 17 39740076 39740076 C T KRT14 Missense_Mutation p.R288H 0.23 deleterious(0.01) possibly_damaging(0.88) TCGA-BR-6452-01 17 39921283 39921283 C T JUP Missense_Mutation p.V316M 0.09 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 17 39974715 39974715 G A FKBP10 Missense_Mutation p.M221I 0.33 deleterious(0) possibly_damaging(0.61) TCGA-BR-6452-01 17 39994123 39994124 - C KLHL10 5'UTR 0.12 TCGA-BR-6452-01 17 40001942 40001942 G A KLHL10 Missense_Mutation p.A417T 0.13 tolerated(0.17) benign(0.2) TCGA-BR-6452-01 17 40134398 40134398 T - DNAJC7 Frame_Shift_Del p.N369Mfs*6 0.26 TCGA-BR-6452-01 17 40141535 40141535 A G DNAJC7 Missense_Mutation p.Y214H 0.05 deleterious(0) possibly_damaging(0.595) TCGA-BR-6452-01 17 4020355 4020355 T C ZZEF1 Missense_Mutation p.Y202C 0.25 tolerated(0.09) benign(0.033) TCGA-BR-6452-01 17 40311968 40311968 A G KCNH4 3'UTR 0.25 TCGA-BR-6452-01 17 40344600 40344600 C A GHDC Missense_Mutation p.R183M 0.12 tolerated(0.1) benign(0.213) TCGA-BR-6452-01 17 40458336 40458336 C T STAT5A Silent p.A517A 0.23 TCGA-BR-6452-01 17 40839038 40839038 C T CNTNAP1 Missense_Mutation p.R340W 0.25 deleterious(0) benign(0.386) TCGA-BR-6452-01 17 40937321 40937321 C T WNK4 Missense_Mutation p.R433C 0.33 deleterious(0) unknown(0) TCGA-BR-6452-01 17 40990148 40990148 A G PSME3 Missense_Mutation p.S111G 0.11 deleterious(0.05) possibly_damaging(0.697) TCGA-BR-6452-01 17 41004027 41004027 C T AOC3 Missense_Mutation p.R223W 0.10 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 17 41108275 41108275 G A AARSD1 Silent p.G203G 0.12 TCGA-BR-6452-01 17 41610090 41610090 C - ETV4 Frame_Shift_Del p.A255Rfs*4 0.13 TCGA-BR-6452-01 17 41610241 41610241 G T ETV4 Silent p.P204P 0.19 TCGA-BR-6452-01 17 41891392 41891392 G A MPP3 Silent p.G414G 0.25 TCGA-BR-6452-01 17 42018862 42018862 C T PPY Missense_Mutation p.R54H 0.09 deleterious(0.04) possibly_damaging(0.757) TCGA-BR-6452-01 17 42082072 42082072 C A NAGS Missense_Mutation p.A14D 0.10 tolerated_low_confidence(0.13) benign(0) TCGA-BR-6452-01 17 42225348 42225348 G A C17orf53 Silent p.R59R 0.16 TCGA-BR-6452-01 17 42286718 42286718 A G UBTF Splice_Site p.X635_splice 0.12 TCGA-BR-6452-01 17 42463260 42463260 T G ITGA2B Missense_Mutation p.T114P 0.18 tolerated(0.17) possibly_damaging(0.479) TCGA-BR-6452-01 17 42478681 42478681 G A GPATCH8 Missense_Mutation p.T255I 0.09 tolerated(0.23) benign(0.085) TCGA-BR-6452-01 17 42928638 42928638 G A EFTUD2 3'UTR 0.18 TCGA-BR-6452-01 17 42937909 42937909 T C EFTUD2 Missense_Mutation p.Y537C 0.10 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 17 43044935 43044935 G A C1QL1 Missense_Mutation p.A161V 0.09 tolerated(0.1) benign(0.22) TCGA-BR-6452-01 17 43923692 43923692 G A SPPL2C Missense_Mutation p.V474M 0.26 tolerated(0.21) benign(0.076) TCGA-BR-6452-01 17 44061060 44061060 C - MAPT Frame_Shift_Del p.L299Wfs*106 0.22 TCGA-BR-6452-01 17 44061147 44061147 C T MAPT Missense_Mutation p.A326V 0.20 tolerated(0.14) benign(0.009) TCGA-BR-6452-01 17 44116579 44116579 G A KANSL1 Silent p.L736L 0.08 TCGA-BR-6452-01 17 4436605 4436605 C T SPNS2 Missense_Mutation p.R386C 0.29 deleterious(0) probably_damaging(0.916) TCGA-BR-6452-01 17 44806237 44806237 C T NSF Silent p.G615G 0.14 TCGA-BR-6452-01 17 45904545 45904545 C T MRPL10 Missense_Mutation p.R93H 0.11 tolerated(0.22) benign(0.011) TCGA-BR-6452-01 17 45909496 45909496 G A LRRC46 Missense_Mutation p.G14D 0.07 tolerated(0.17) benign(0.016) TCGA-BR-6452-01 17 46153532 46153532 T C CBX1 Missense_Mutation p.N50S 0.09 tolerated(0.08) probably_damaging(0.957) TCGA-BR-6452-01 17 4641712 4641712 C T CXCL16 Missense_Mutation p.D117N 0.16 deleterious(0.02) probably_damaging(0.95) TCGA-BR-6452-01 17 4647966 4647966 G A ZMYND15 Missense_Mutation p.R577Q 0.26 tolerated(0.09) probably_damaging(0.983) TCGA-BR-6452-01 17 46607839 46607839 G - HOXB1 Frame_Shift_Del p.P143Lfs*41 0.17 TCGA-BR-6452-01 17 46608232 46608232 T C HOXB1 Missense_Mutation p.Y12C 0.09 deleterious(0) possibly_damaging(0.907) TCGA-BR-6452-01 17 46669628 46669628 C A HOXB5 Missense_Mutation p.K251N 0.08 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 17 46691747 46691747 T C HOXB8 Missense_Mutation p.Y107C 0.14 deleterious(0.01) possibly_damaging(0.855) TCGA-BR-6452-01 17 46691765 46691765 T C HOXB8 Missense_Mutation p.D101G 0.12 tolerated(0.1) benign(0.064) TCGA-BR-6452-01 17 46804235 46804235 G A HOXB13 Missense_Mutation p.R258C 0.21 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 17 46847394 46847394 C T TTLL6 Silent p.P702P 0.08 TCGA-BR-6452-01 17 47039154 47039154 C T GIP Silent p.E95E 0.18 TCGA-BR-6452-01 17 4711687 4711687 T C PLD2 Missense_Mutation p.L120S 0.08 tolerated(0.4) possibly_damaging(0.704) TCGA-BR-6452-01 17 47121413 47121413 A G IGF2BP1 Missense_Mutation p.K429E 0.22 deleterious(0) benign(0.425) TCGA-BR-6452-01 17 4721823 4721823 C T PLD2 Missense_Mutation p.P682S 0.08 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 17 4722429 4722429 G T PLD2 Nonsense_Mutation p.G742* 0.11 TCGA-BR-6452-01 17 47284707 47284707 T C GNGT2 Silent p.R26R 0.08 TCGA-BR-6452-01 17 47583768 47583768 G A NGFR Missense_Mutation p.V106M 0.33 deleterious(0.01) possibly_damaging(0.888) TCGA-BR-6452-01 17 4796870 4796870 A C MINK1 Missense_Mutation p.S848R 0.18 tolerated(0.29) possibly_damaging(0.527) TCGA-BR-6452-01 17 4804281 4804281 T C CHRNE Intron 0.12 TCGA-BR-6452-01 17 48072105 48072105 A G DLX3 Silent p.Y86Y 0.08 TCGA-BR-6452-01 17 48263363 48263363 C A COL1A1 Missense_Mutation p.G1342C 0.14 unknown(0) TCGA-BR-6452-01 17 48270162 48270162 G - COL1A1 Frame_Shift_Del p.P624Lfs*142 0.20 TCGA-BR-6452-01 17 48458187 48458187 C T EME1 Missense_Mutation p.R547C 0.09 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 17 4848061 4848061 G A RNF167 Missense_Mutation p.C268Y 0.08 deleterious(0) probably_damaging(0.939) TCGA-BR-6452-01 17 48539648 48539648 C T ACSF2 Missense_Mutation p.A204V 0.11 tolerated(0.3) possibly_damaging(0.677) TCGA-BR-6452-01 17 48545855 48545855 G A CHAD Missense_Mutation p.S107F 0.08 deleterious(0) probably_damaging(0.987) TCGA-BR-6452-01 17 48603399 48603399 G A MYCBPAP Missense_Mutation p.R690H 0.14 tolerated(0.4) benign(0.001) TCGA-BR-6452-01 17 48678434 48678434 A G CACNA1G Missense_Mutation p.I1272V 0.08 tolerated(0.43) possibly_damaging(0.814) TCGA-BR-6452-01 17 48678461 48678461 G A CACNA1G Missense_Mutation p.V1281M 0.11 deleterious(0.03) probably_damaging(0.988) TCGA-BR-6452-01 17 48680184 48680184 C T CACNA1G Missense_Mutation p.R1307C 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-BR-6452-01 17 48776791 48776792 - A ANKRD40 Frame_Shift_Ins p.F250Lfs*8 0.09 TCGA-BR-6452-01 17 48940379 48940379 A G TOB1 Missense_Mutation p.Y334H 0.11 deleterious(0.02) benign(0.018) TCGA-BR-6452-01 17 49048098 49048098 C T SPAG9 Missense_Mutation p.G1274R 0.18 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 17 4905895 4905895 A G KIF1C Missense_Mutation p.Y189C 0.10 deleterious(0) benign(0.425) TCGA-BR-6452-01 17 4937093 4937093 G A SLC52A1 Missense_Mutation p.P231S 0.10 tolerated(0.49) benign(0.004) TCGA-BR-6452-01 17 5039162 5039162 T C USP6 Silent p.P201P 0.07 TCGA-BR-6452-01 17 5041418 5041418 C T USP6 Missense_Mutation p.R310C 0.16 deleterious_low_confidence(0) possibly_damaging(0.898) TCGA-BR-6452-01 17 5276735 5276735 C A RABEP1 Missense_Mutation p.P671T 0.09 deleterious(0) probably_damaging(0.911) TCGA-BR-6452-01 17 53108540 53108540 T A STXBP4 Nonsense_Mutation p.Y226* 0.08 TCGA-BR-6452-01 17 53342842 53342842 C T HLF 5'UTR 0.15 TCGA-BR-6452-01 17 5338255 5338255 T C C1QBP Missense_Mutation p.I139V 0.08 tolerated(0.46) benign(0.046) TCGA-BR-6452-01 17 53392616 53392616 A G HLF Silent p.T160T 0.10 TCGA-BR-6452-01 17 53478860 53478860 T A MMD Silent p.G162G 0.17 TCGA-BR-6452-01 17 54450156 54450156 A G ANKFN1 Missense_Mutation p.R254G 0.08 deleterious(0) possibly_damaging(0.879) TCGA-BR-6452-01 17 56276948 56276948 G A EPX Missense_Mutation p.A444T 0.08 tolerated(0.23) benign(0.024) TCGA-BR-6452-01 17 56276962 56276962 G - EPX Frame_Shift_Del p.H450Tfs*80 0.14 TCGA-BR-6452-01 17 56345358 56345358 G A LPO 3'UTR 0.11 TCGA-BR-6452-01 17 56540625 56540625 G A HSF5 Missense_Mutation p.P354S 0.11 tolerated(0.09) possibly_damaging(0.656) TCGA-BR-6452-01 17 56565215 56565215 C T HSF5 Missense_Mutation p.G141S 0.18 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 17 56565535 56565535 C T HSF5 Missense_Mutation p.G34D 0.11 tolerated(0.09) benign(0.197) TCGA-BR-6452-01 17 56582887 56582887 C T MTMR4 Missense_Mutation p.R350Q 0.14 deleterious(0.01) probably_damaging(0.998) TCGA-BR-6452-01 17 56598409 56598409 T C SEPT4 Silent p.A424A 0.18 TCGA-BR-6452-01 17 56604289 56604289 G A SEPT4 Silent p.F52F 0.22 TCGA-BR-6452-01 17 57125059 57125059 A G TRIM37 Missense_Mutation p.I551T 0.20 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BR-6452-01 17 57196750 57196750 C G SKA2 Missense_Mutation p.S76T 0.11 tolerated(0.41) benign(0.016) TCGA-BR-6452-01 17 57232603 57232603 A G SKA2 5'UTR 0.19 TCGA-BR-6452-01 17 57288871 57288871 G T SMG8 Nonsense_Mutation p.G487* 0.11 TCGA-BR-6452-01 17 58011797 58011797 C - RPS6KB1 Frame_Shift_Del p.P262Lfs*4 0.16 TCGA-BR-6452-01 17 58233921 58233921 T C CA4 Missense_Mutation p.V38A 0.13 tolerated(0.29) benign(0.009) TCGA-BR-6452-01 17 58952026 58952026 C T BCAS3 Silent p.I196I 0.26 TCGA-BR-6452-01 17 58967097 58967097 C A BCAS3 Missense_Mutation p.L235I 0.06 deleterious(0.01) benign(0.005) TCGA-BR-6452-01 17 59480452 59480452 C T TBX2 Missense_Mutation p.P232S 0.21 deleterious(0) possibly_damaging(0.447) TCGA-BR-6452-01 17 59560379 59560379 C T TBX4 Silent p.P380P 0.16 TCGA-BR-6452-01 17 6021338 6021338 G A WSCD1 Missense_Mutation p.S402N 0.07 deleterious(0.01) probably_damaging(0.995) TCGA-BR-6452-01 17 60802447 60802447 G A MARCH10 Silent p.S652S 0.12 TCGA-BR-6452-01 17 61473221 61473221 G A TANC2 Missense_Mutation p.G983R 0.14 tolerated(0.08) benign(0.091) TCGA-BR-6452-01 17 61561282 61561282 A G ACE Silent p.P553P 0.13 TCGA-BR-6452-01 17 61611428 61611428 A G KCNH6 Missense_Mutation p.D286G 0.07 tolerated(0.21) benign(0) TCGA-BR-6452-01 17 61628105 61628105 A T DCAF7 Missense_Mutation p.N23Y 0.08 tolerated(0.11) benign(0.002) TCGA-BR-6452-01 17 61877936 61877936 A - DDX42 Frame_Shift_Del p.I196Sfs*29 0.21 TCGA-BR-6452-01 17 61914568 61914568 A G SMARCD2 Missense_Mutation p.V144A 0.13 tolerated(0.17) benign(0.251) TCGA-BR-6452-01 17 62135346 62135346 T C ERN1 Missense_Mutation p.N405S 0.31 tolerated(1) benign(0.014) TCGA-BR-6452-01 17 62149457 62149457 T - ERN1 Frame_Shift_Del p.K121Sfs*11 0.25 TCGA-BR-6452-01 17 62492909 62492909 G A POLG2 Missense_Mutation p.P60S 0.18 tolerated_low_confidence(0.07) benign(0.169) TCGA-BR-6452-01 17 62496396 62496396 T C DDX5 Missense_Mutation p.Y497C 0.18 tolerated(0.09) benign(0.014) TCGA-BR-6452-01 17 62541846 62541855 AAAAAAGGGG - SMURF2 3'UTR 0.32 TCGA-BR-6452-01 17 62855980 62855980 A G LRRC37A3 Silent p.A1428A 0.07 TCGA-BR-6452-01 17 62856650 62856650 C T LRRC37A3 Missense_Mutation p.R1205K 0.08 tolerated(0.17) benign(0.168) TCGA-BR-6452-01 17 62893387 62893387 C T LRRC37A3 5'UTR 0.08 TCGA-BR-6452-01 17 63221501 63221501 G A RGS9 Missense_Mutation p.A597T 0.09 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-BR-6452-01 17 6329092 6329092 G A AIPL1 Silent p.A281A 0.17 TCGA-BR-6452-01 17 63533080 63533080 G A AXIN2 Missense_Mutation p.A605V 0.08 tolerated(0.26) benign(0.002) TCGA-BR-6452-01 17 6377778 6377778 C T PITPNM3 Missense_Mutation p.R411Q 0.12 deleterious(0) probably_damaging(0.991) TCGA-BR-6452-01 17 65040890 65040890 C T CACNG1 Silent p.H38H 0.15 TCGA-BR-6452-01 17 66040035 66040035 G A KPNA2 Missense_Mutation p.A338T 0.10 tolerated(0.47) benign(0.03) TCGA-BR-6452-01 17 66416413 66416413 G A ARSG Missense_Mutation p.A463T 0.28 deleterious(0.05) benign(0.103) TCGA-BR-6452-01 17 6683582 6683582 A G FBXO39 Missense_Mutation p.Q132R 0.10 tolerated(0.59) benign(0.344) TCGA-BR-6452-01 17 67047255 67047255 G A ABCA9 Missense_Mutation p.R5C 0.26 deleterious(0.03) benign(0.003) TCGA-BR-6452-01 17 67246059 67246059 A - ABCA5 Frame_Shift_Del p.F1584Lfs*27 0.12 TCGA-BR-6452-01 17 67250502 67250502 C T ABCA5 Missense_Mutation p.A1400T 0.07 deleterious(0.03) possibly_damaging(0.654) TCGA-BR-6452-01 17 67293435 67293435 T G ABCA5 Silent p.R445R 0.13 TCGA-BR-6452-01 17 704358 704358 T A NXN Missense_Mutation p.D380V 0.13 deleterious(0) possibly_damaging(0.855) TCGA-BR-6452-01 17 71193082 71193082 G T COG1 Missense_Mutation p.G202C 0.13 deleterious(0.02) benign(0.018) TCGA-BR-6452-01 17 71239049 71239049 A G C17orf80 Missense_Mutation p.N546D 0.13 tolerated(0.19) probably_damaging(0.969) TCGA-BR-6452-01 17 72205978 72205978 A G RPL38 3'UTR 0.08 TCGA-BR-6452-01 17 72227099 72227099 G T TTYH2 Missense_Mutation p.L125F 0.08 deleterious(0.03) possibly_damaging(0.744) TCGA-BR-6452-01 17 72249893 72249893 G A TTYH2 Splice_Site p.X482_splice 0.09 TCGA-BR-6452-01 17 7229645 7229645 C T NEURL4 Missense_Mutation p.G408S 0.19 deleterious(0) probably_damaging(0.975) TCGA-BR-6452-01 17 72340925 72340925 A G KIF19 Missense_Mutation p.N203S 0.26 deleterious(0) probably_damaging(0.98) TCGA-BR-6452-01 17 72368331 72368331 C T GPR142 Silent p.G327G 0.13 TCGA-BR-6452-01 17 72521943 72521943 C A CD300LB Missense_Mutation p.G142V 0.22 deleterious(0) probably_damaging(0.987) TCGA-BR-6452-01 17 7256172 7256172 C - KCTD11 5'UTR 0.28 TCGA-BR-6452-01 17 72768367 72768367 C T NAT9 Missense_Mutation p.M128I 0.12 deleterious(0.01) benign(0.108) TCGA-BR-6452-01 17 7286169 7286169 C A TNK1 5'UTR 0.16 TCGA-BR-6452-01 17 72861880 72861880 G A FDXR Silent p.D233D 0.24 TCGA-BR-6452-01 17 72862566 72862566 A G FDXR Splice_Site p.X174_splice 0.23 TCGA-BR-6452-01 17 72943337 72943337 G A OTOP3 Missense_Mutation p.A463T 0.22 tolerated(0.53) benign(0.042) TCGA-BR-6452-01 17 73058330 73058330 A - KCTD2 Frame_Shift_Del p.K252Rfs*32 0.28 TCGA-BR-6452-01 17 73089824 73089824 C T SLC16A5 Silent p.P31P 0.22 TCGA-BR-6452-01 17 73240709 73240709 G A GGA3 Silent p.V97V 0.10 TCGA-BR-6452-01 17 73316467 73316467 G - GRB2 Frame_Shift_Del p.V213* 0.20 TCGA-BR-6452-01 17 73491388 73491390 CTC - KIAA0195 In_Frame_Del p.L920del 0.34 TCGA-BR-6452-01 17 7351977 7351977 A T CHRNB1 Silent p.G230G 0.10 TCGA-BR-6452-01 17 73664707 73664707 T C SAP30BP Splice_Site p.X72_splice 0.12 TCGA-BR-6452-01 17 73720778 73720778 A G ITGB4 5'UTR 0.16 TCGA-BR-6452-01 17 73727438 73727439 - G ITGB4 Frame_Shift_Ins p.E404Gfs*13 0.10 TCGA-BR-6452-01 17 73746239 73746239 C - ITGB4 Frame_Shift_Del p.P1123Lfs*37 0.19 TCGA-BR-6452-01 17 73774605 73774605 A - H3F3B 3'UTR 0.27 TCGA-BR-6452-01 17 73774649 73774649 A G H3F3B 3'UTR 0.07 TCGA-BR-6452-01 17 73956385 73956385 T C ACOX1 Missense_Mutation p.Q114R 0.14 tolerated(0.12) probably_damaging(0.95) TCGA-BR-6452-01 17 74003870 74003870 G A EVPL Missense_Mutation p.P1806S 0.09 tolerated(0.34) benign(0.006) TCGA-BR-6452-01 17 74163130 74163130 G T RNF157 Missense_Mutation p.P174H 0.16 deleterious(0) probably_damaging(0.971) TCGA-BR-6452-01 17 74208459 74208460 - C RNF157 Frame_Shift_Ins p.N65Efs*38 0.25 TCGA-BR-6452-01 17 74307730 74307730 T C PRPSAP1 Missense_Mutation p.K351E 0.10 deleterious(0.02) possibly_damaging(0.799) TCGA-BR-6452-01 17 74383020 74383020 G A SPHK1 Missense_Mutation p.A256T 0.13 tolerated(0.11) benign(0.03) TCGA-BR-6452-01 17 74386995 74386995 G T UBE2O 3'UTR 0.09 TCGA-BR-6452-01 17 74387043 74387043 T C UBE2O Missense_Mutation p.E1287G 0.08 deleterious_low_confidence(0) benign(0.073) TCGA-BR-6452-01 17 74392741 74392741 G - UBE2O Frame_Shift_Del p.I760Sfs*16 0.14 TCGA-BR-6452-01 17 74394418 74394418 T C UBE2O Missense_Mutation p.H648R 0.10 deleterious(0) probably_damaging(0.977) TCGA-BR-6452-01 17 74395720 74395720 C T UBE2O Missense_Mutation p.A480T 0.19 tolerated(0.16) possibly_damaging(0.716) TCGA-BR-6452-01 17 7468286 7468286 C T SENP3 Silent p.D322D 0.26 TCGA-BR-6452-01 17 74732956 74732956 G - SRSF2 Frame_Shift_Del p.P96Rfs*148 0.34 TCGA-BR-6452-01 17 75210055 75210055 G A SEC14L1 Missense_Mutation p.A700T 0.14 tolerated(0.24) possibly_damaging(0.621) TCGA-BR-6452-01 17 75478396 75478396 G A SEPT9 Missense_Mutation p.E298K 0.17 deleterious(0) possibly_damaging(0.874) TCGA-BR-6452-01 17 76046762 76046762 C T TNRC6C Missense_Mutation p.S540L 0.21 tolerated(0.24) benign(0.207) TCGA-BR-6452-01 17 7604986 7604986 G A WRAP53 Silent p.T278T 0.09 TCGA-BR-6452-01 17 76471424 76471424 T C DNAH17 Missense_Mutation p.Y2802C 0.07 possibly_damaging(0.825) TCGA-BR-6452-01 17 76968044 76968044 A G LGALS3BP Missense_Mutation p.Y458H 0.08 tolerated(0.34) possibly_damaging(0.646) TCGA-BR-6452-01 17 7697597 7697598 - C DNAH2 Frame_Shift_Ins p.G2535Wfs*44 0.09 TCGA-BR-6452-01 17 7710589 7710589 C T DNAH2 Silent p.R3188R 0.08 TCGA-BR-6452-01 17 7727218 7727218 G A DNAH2 Missense_Mutation p.R3799H 0.16 probably_damaging(0.989) TCGA-BR-6452-01 17 7727556 7727556 G A DNAH2 Missense_Mutation p.A3866T 0.16 possibly_damaging(0.901) TCGA-BR-6452-01 17 77770303 77770303 A G CBX8 Missense_Mutation p.S36P 0.18 deleterious(0.03) probably_damaging(0.976) TCGA-BR-6452-01 17 77807929 77807929 C T CBX4 Silent p.A504A 0.13 TCGA-BR-6452-01 17 7814196 7814196 C T CHD3 Missense_Mutation p.P1988L 0.20 possibly_damaging(0.726) TCGA-BR-6452-01 17 78269493 78269493 A - RNF213 Frame_Shift_Del p.I633Lfs*5 0.17 TCGA-BR-6452-01 17 78280153 78280153 T C RNF213 Missense_Mutation p.V771A 0.07 benign(0.002) TCGA-BR-6452-01 17 78314040 78314040 C T RNF213 Missense_Mutation p.A1958V 0.11 benign(0.011) TCGA-BR-6452-01 17 78318781 78318781 C T RNF213 Missense_Mutation p.R2216W 0.28 benign(0.032) TCGA-BR-6452-01 17 78321547 78321547 G A RNF213 Missense_Mutation p.V3138I 0.26 probably_damaging(0.996) TCGA-BR-6452-01 17 78321938 78321938 T C RNF213 Missense_Mutation p.V3268A 0.12 probably_damaging(0.933) TCGA-BR-6452-01 17 78360533 78360533 A C RNF213 Missense_Mutation p.S4922R 0.06 probably_damaging(0.953) TCGA-BR-6452-01 17 7836379 7836379 T C CNTROB 5'UTR 0.08 TCGA-BR-6452-01 17 7842846 7842846 G T CNTROB Missense_Mutation p.A315S 0.08 tolerated(0.16) probably_damaging(0.998) TCGA-BR-6452-01 17 7906918 7906918 G A GUCY2D Missense_Mutation p.A185T 0.17 deleterious(0) possibly_damaging(0.883) TCGA-BR-6452-01 17 79177336 79177336 G A AZI1 Missense_Mutation p.A196V 0.16 tolerated(0.33) benign(0.014) TCGA-BR-6452-01 17 79226324 79226324 G A SLC38A10 Missense_Mutation p.A539V 0.24 tolerated(0.39) benign(0.021) TCGA-BR-6452-01 17 7951813 7951813 G A ALOX15B Missense_Mutation p.R654Q 0.24 deleterious(0.01) benign(0.093) TCGA-BR-6452-01 17 79687071 79687071 G T SLC25A10 Missense_Mutation p.Q285H 0.07 deleterious(0) probably_damaging(0.967) TCGA-BR-6452-01 17 79803083 79803083 G A P4HB Silent p.R461R 0.24 TCGA-BR-6452-01 17 79804462 79804462 C T P4HB Missense_Mutation p.R300H 0.12 tolerated(0.08) probably_damaging(0.994) TCGA-BR-6452-01 17 79826767 79826767 C A ARHGDIA Missense_Mutation p.K200N 0.11 deleterious(0.01) benign(0.125) TCGA-BR-6452-01 17 79873553 79873553 G A SIRT7 Missense_Mutation p.A114V 0.14 deleterious(0) probably_damaging(0.965) TCGA-BR-6452-01 17 79990609 79990609 G A RAC3 Missense_Mutation p.V44M 0.34 tolerated_low_confidence(0.08) possibly_damaging(0.775) TCGA-BR-6452-01 17 80011878 80011878 C T GPS1 Silent p.N127N 0.31 TCGA-BR-6452-01 17 80014394 80014394 T C GPS1 Missense_Mutation p.Y402H 0.09 deleterious(0) probably_damaging(0.993) TCGA-BR-6452-01 17 80136446 80136446 T C CCDC57 Silent p.L470L 0.20 TCGA-BR-6452-01 17 80159603 80159603 C T CCDC57 Missense_Mutation p.R73H 0.25 tolerated(0.23) benign(0.062) TCGA-BR-6452-01 17 80441653 80441653 T G NARF Silent p.T277T 0.14 TCGA-BR-6452-01 17 80443439 80443439 C A NARF Silent p.A346A 0.06 TCGA-BR-6452-01 17 80861301 80861301 C T TBCD Missense_Mutation p.A584V 0.16 deleterious(0.02) benign(0.017) TCGA-BR-6452-01 17 8167098 8167098 G A PFAS Silent p.G545G 0.09 TCGA-BR-6452-01 17 8168393 8168393 G A PFAS Missense_Mutation p.V744M 0.10 deleterious(0.01) probably_damaging(0.992) TCGA-BR-6452-01 17 8215626 8215626 C T ARHGEF15 Missense_Mutation p.S90F 0.10 tolerated_low_confidence(0.06) benign(0.001) TCGA-BR-6452-01 17 8273427 8273427 C A KRBA2 Missense_Mutation p.Q168H 0.21 tolerated(0.13) benign(0.035) TCGA-BR-6452-01 17 8422252 8422252 G A MYH10 Missense_Mutation p.P764S 0.09 probably_damaging(0.999) TCGA-BR-6452-01 17 8526464 8526464 T - MYH10 Frame_Shift_Del p.K34Sfs*2 0.22 TCGA-BR-6452-01 17 902817 902817 T G TIMM22 Silent p.G167G 0.08 TCGA-BR-6452-01 17 914003 914003 C T ABR Silent p.T734T 0.10 TCGA-BR-6452-01 17 953410 953410 G A ABR Silent p.I557I 0.20 TCGA-BR-6452-01 18 10671647 10671647 T G PIEZO2 Silent p.T2712T 0.12 TCGA-BR-6452-01 18 10696277 10696277 C T PIEZO2 Missense_Mutation p.A2216T 0.21 deleterious(0.04) possibly_damaging(0.833) TCGA-BR-6452-01 18 12274124 12274124 G A CIDEA Silent p.P121P 0.22 TCGA-BR-6452-01 18 12367305 12367305 A G AFG3L2 Silent p.D123D 0.07 TCGA-BR-6452-01 18 12678171 12678171 G A CEP76 Silent p.D520D 0.09 TCGA-BR-6452-01 18 12699092 12699092 A T CEP76 Missense_Mutation p.F136I 0.10 deleterious(0.01) possibly_damaging(0.756) TCGA-BR-6452-01 18 12724555 12724555 C T PSMG2 Silent p.N213N 0.12 TCGA-BR-6452-01 18 13087145 13087145 C T CEP192 Missense_Mutation p.R1916C 0.25 deleterious(0) probably_damaging(0.972) TCGA-BR-6452-01 18 13089513 13089514 CA - CEP192 Frame_Shift_Del p.Q2018Kfs*3 0.16 TCGA-BR-6452-01 18 13099478 13099478 T C CEP192 Silent p.S2187S 0.12 TCGA-BR-6452-01 18 13438344 13438344 C G LDLRAD4 Missense_Mutation p.L48V 0.24 tolerated_low_confidence(0.15) benign(0.054) TCGA-BR-6452-01 18 13681828 13681828 A T FAM210A Missense_Mutation p.H83Q 0.06 tolerated(0.25) benign(0.003) TCGA-BR-6452-01 18 13742637 13742637 T C RNMT Silent p.F375F 0.10 TCGA-BR-6452-01 18 13746253 13746253 A - RNMT Frame_Shift_Del p.T394Hfs*19 0.12 TCGA-BR-6452-01 18 19203854 19203854 A G SNRPD1 Silent p.L79L 0.08 TCGA-BR-6452-01 18 19762796 19762796 A T GATA6 Missense_Mutation p.T503S 0.15 tolerated(0.36) benign(0.008) TCGA-BR-6452-01 18 20814617 20814617 T C CABLES1 Silent p.S378S 0.10 TCGA-BR-6452-01 18 209989 209989 C - USP14 Frame_Shift_Del p.Q396Rfs*29 0.13 TCGA-BR-6452-01 18 21413846 21413846 G A LAMA3 Missense_Mutation p.V960I 0.26 benign(0.005) TCGA-BR-6452-01 18 21413908 21413908 G A LAMA3 Silent p.G980G 0.10 TCGA-BR-6452-01 18 214854 214854 A C THOC1 Silent p.G582G 0.08 TCGA-BR-6452-01 18 21496586 21496586 C T LAMA3 Missense_Mutation p.A2617V 0.07 benign(0.015) TCGA-BR-6452-01 18 22057338 22057338 T C HRH4 Missense_Mutation p.Y329H 0.08 tolerated(0.34) benign(0.037) TCGA-BR-6452-01 18 23632767 23632767 A T SS18 Missense_Mutation p.L143H 0.09 tolerated_low_confidence(0.18) benign(0.003) TCGA-BR-6452-01 18 23713918 23713918 T C PSMA8 5'UTR 0.08 TCGA-BR-6452-01 18 23738101 23738101 A G PSMA8 Missense_Mutation p.N130D 0.11 deleterious(0.03) probably_damaging(0.999) TCGA-BR-6452-01 18 24035751 24035751 G A KCTD1 Missense_Mutation p.R244C 0.24 deleterious_low_confidence(0.03) benign(0.002) TCGA-BR-6452-01 18 25543415 25543415 C T CDH2 Missense_Mutation p.R807Q 0.10 deleterious(0.03) probably_damaging(0.999) TCGA-BR-6452-01 18 28586996 28586996 T - DSC3 Frame_Shift_Del p.M589Wfs*7 0.21 TCGA-BR-6452-01 18 28659862 28659862 C A DSC2 Missense_Mutation p.E538D 0.10 tolerated(0.44) benign(0.052) TCGA-BR-6452-01 18 2885039 2885039 G T EMILIN2 Missense_Mutation p.G112V 0.10 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 18 29116236 29116236 C A DSG2 Missense_Mutation p.L499M 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-BR-6452-01 18 2937687 2937687 T C LPIN2 Intron 0.11 TCGA-BR-6452-01 18 29410886 29410886 A G TRAPPC8 Silent p.L1380L 0.23 TCGA-BR-6452-01 18 29432581 29432581 G A TRAPPC8 Missense_Mutation p.A1160V 0.07 deleterious(0.03) benign(0.11) TCGA-BR-6452-01 18 29617122 29617122 T C RNF125 Missense_Mutation p.W70R 0.10 tolerated(0.67) probably_damaging(0.993) TCGA-BR-6452-01 18 29645945 29645945 T C RNF125 Silent p.S195S 0.09 TCGA-BR-6452-01 18 30349862 30349862 G - KLHL14 Frame_Shift_Del p.V232Wfs*30 0.27 TCGA-BR-6452-01 18 30350377 30350377 A T KLHL14 Missense_Mutation p.S60T 0.17 deleterious(0.01) possibly_damaging(0.899) TCGA-BR-6452-01 18 30804894 30804895 - T CCDC178 Frame_Shift_Ins p.L555Tfs*11 0.12 TCGA-BR-6452-01 18 30806795 30806796 - T CCDC178 Frame_Shift_Ins p.L540Tfs*5 0.09 TCGA-BR-6452-01 18 31319679 31319679 T A ASXL3 Missense_Mutation p.S771T 0.12 benign(0.352) TCGA-BR-6452-01 18 31323514 31323514 T A ASXL3 Missense_Mutation p.N1234K 0.09 possibly_damaging(0.521) TCGA-BR-6452-01 18 3142042 3142042 G A MYOM1 Silent p.P640P 0.10 TCGA-BR-6452-01 18 31599387 31599387 C T NOL4 Silent p.S317S 0.08 TCGA-BR-6452-01 18 32948335 32948335 A T ZNF396 Missense_Mutation p.S328T 0.08 deleterious_low_confidence(0) benign(0.294) TCGA-BR-6452-01 18 33607161 33607161 A G RPRD1A Missense_Mutation p.L200S 0.09 deleterious(0) probably_damaging(0.918) TCGA-BR-6452-01 18 33689477 33689477 T C SLC39A6 3'UTR 0.07 TCGA-BR-6452-01 18 33689669 33689669 A G SLC39A6 Missense_Mutation p.C719R 0.11 deleterious(0.01) probably_damaging(0.979) TCGA-BR-6452-01 18 33702206 33702206 T C SLC39A6 Missense_Mutation p.S390G 0.08 tolerated(0.41) benign(0.004) TCGA-BR-6452-01 18 33795876 33795876 C G MOCOS Missense_Mutation p.A578G 0.10 tolerated(0.9) benign(0.001) TCGA-BR-6452-01 18 34205603 34205603 C T FHOD3 Missense_Mutation p.R363C 0.33 deleterious(0.01) probably_damaging(0.995) TCGA-BR-6452-01 18 34398915 34398915 T C TPGS2 Missense_Mutation p.E36G 0.07 tolerated(0.07) benign(0.008) TCGA-BR-6452-01 18 39550506 39550506 A T PIK3C3 Intron 0.21 TCGA-BR-6452-01 18 42530292 42530292 T C SETBP1 Silent p.P329P 0.08 TCGA-BR-6452-01 18 42533228 42533228 C T SETBP1 Missense_Mutation p.T1308M 0.23 deleterious(0) probably_damaging(0.975) TCGA-BR-6452-01 18 43219786 43219786 G A SLC14A2 Missense_Mutation p.V307M 0.09 tolerated(0.09) possibly_damaging(0.82) TCGA-BR-6452-01 18 43510722 43510722 T C EPG5 Missense_Mutation p.T778A 0.12 tolerated(0.17) benign(0.004) TCGA-BR-6452-01 18 43532382 43532382 A G EPG5 Silent p.I412I 0.09 TCGA-BR-6452-01 18 43577772 43577772 G A PSTPIP2 Silent p.I195I 0.24 TCGA-BR-6452-01 18 43664567 43664567 A G ATP5A1 Missense_Mutation p.Y495H 0.13 tolerated_low_confidence(0.28) benign(0.014) TCGA-BR-6452-01 18 43705714 43705714 C T HAUS1 Missense_Mutation p.P248L 0.18 tolerated(0.13) probably_damaging(0.925) TCGA-BR-6452-01 18 44470945 44470945 G A PIAS2 Missense_Mutation p.R33C 0.21 tolerated(0.07) benign(0) TCGA-BR-6452-01 18 44559507 44559507 G A TCEB3B Missense_Mutation p.A710V 0.24 deleterious(0.02) possibly_damaging(0.739) TCGA-BR-6452-01 18 44560674 44560674 T C TCEB3B Missense_Mutation p.D321G 0.10 tolerated(0.06) benign(0.043) TCGA-BR-6452-01 18 44560714 44560714 G A TCEB3B Missense_Mutation p.P308S 0.09 tolerated(0.14) possibly_damaging(0.857) TCGA-BR-6452-01 18 44561192 44561192 A G TCEB3B Silent p.S148S 0.11 TCGA-BR-6452-01 18 44561608 44561608 C T TCEB3B Missense_Mutation p.A10T 0.19 tolerated(0.08) possibly_damaging(0.832) TCGA-BR-6452-01 18 45567392 45567392 G A ZBTB7C Silent p.H29H 0.20 TCGA-BR-6452-01 18 46645179 46645179 G A DYM Missense_Mutation p.R561C 0.12 deleterious(0) probably_damaging(0.983) TCGA-BR-6452-01 18 47320717 47320717 T C ACAA2 Silent p.V170V 0.08 TCGA-BR-6452-01 18 47363953 47363953 G A MYO5B Missense_Mutation p.A1691V 0.23 deleterious(0) probably_damaging(0.954) TCGA-BR-6452-01 18 47917530 47917530 T C SKA1 Silent p.N162N 0.19 TCGA-BR-6452-01 18 480755 480755 C T COLEC12 Missense_Mutation p.D4N 0.09 deleterious(0.01) possibly_damaging(0.821) TCGA-BR-6452-01 18 48255702 48255702 G A MAPK4 Silent p.S414S 0.44 TCGA-BR-6452-01 18 48603091 48603091 C T SMAD4 Silent p.A464A 0.22 TCGA-BR-6452-01 18 48604854 48604854 G A SMAD4 3'UTR 0.10 TCGA-BR-6452-01 18 50683828 50683828 C T DCC Missense_Mutation p.A455V 0.11 tolerated(0.12) benign(0.012) TCGA-BR-6452-01 18 51731394 51731394 G A MBD2 Nonsense_Mutation p.R226* 0.07 TCGA-BR-6452-01 18 51807191 51807191 T C POLI Silent p.F238F 0.07 TCGA-BR-6452-01 18 51820609 51820609 G A POLI Silent p.E665E 0.11 TCGA-BR-6452-01 18 5291330 5291330 T C ZBTB14 Missense_Mutation p.R293G 0.14 deleterious(0.03) benign(0.138) TCGA-BR-6452-01 18 52924545 52924545 C T TCF4 Splice_Site p.X484_splice 0.19 TCGA-BR-6452-01 18 54353252 54353252 A G WDR7 Missense_Mutation p.S196G 0.09 tolerated(0.08) benign(0) TCGA-BR-6452-01 18 55287875 55287875 A G NARS Missense_Mutation p.Y7H 0.08 tolerated(0.06) probably_damaging(0.992) TCGA-BR-6452-01 18 56202770 56202770 T C ALPK2 Missense_Mutation p.H1550R 0.08 tolerated(0.4) benign(0.01) TCGA-BR-6452-01 18 56606804 56606804 C T ZNF532 Missense_Mutation p.H886Y 0.12 tolerated(0.67) probably_damaging(0.943) TCGA-BR-6452-01 18 56620892 56620892 A G ZNF532 Missense_Mutation p.E1004G 0.12 tolerated(0.11) benign(0.001) TCGA-BR-6452-01 18 56979972 56979972 T - CPLX4 Frame_Shift_Del p.K67Rfs*44 0.15 TCGA-BR-6452-01 18 57006142 57006142 T C LMAN1 Silent p.Q333Q 0.07 TCGA-BR-6452-01 18 59157790 59157790 T C CDH20 Missense_Mutation p.W2R 0.09 tolerated_low_confidence(0.4) benign(0.001) TCGA-BR-6452-01 18 59195450 59195450 T A CDH20 Missense_Mutation p.I423N 0.19 deleterious(0) possibly_damaging(0.812) TCGA-BR-6452-01 18 59483549 59483549 G A RNF152 Missense_Mutation p.R50W 0.16 deleterious(0.03) probably_damaging(0.998) TCGA-BR-6452-01 18 59777146 59777147 - A PIGN Frame_Shift_Ins p.L499Sfs*58 0.23 TCGA-BR-6452-01 18 60242140 60242140 T C ZCCHC2 Silent p.S942S 0.08 TCGA-BR-6452-01 18 60242648 60242648 C T ZCCHC2 Missense_Mutation p.P1112S 0.12 tolerated(0.13) benign(0.355) TCGA-BR-6452-01 18 60562361 60562361 A G PHLPP1 Silent p.S728S 0.08 TCGA-BR-6452-01 18 61022445 61022445 T A KDSR Missense_Mutation p.T137S 0.11 tolerated(0.77) benign(0.004) TCGA-BR-6452-01 18 61067828 61067829 - A VPS4B Frame_Shift_Ins p.S198Ffs*6 0.23 TCGA-BR-6452-01 18 61170986 61170987 - T SERPINB5 3'UTR 0.10 TCGA-BR-6452-01 18 61261619 61261619 C T SERPINB13 Missense_Mutation p.S168F 0.10 tolerated(0.08) probably_damaging(0.959) TCGA-BR-6452-01 18 61378571 61378571 G A SERPINB11 Silent p.V57V 0.26 TCGA-BR-6452-01 18 61449733 61449733 C T SERPINB7 Missense_Mutation p.R43C 0.15 deleterious(0.02) probably_damaging(0.976) TCGA-BR-6452-01 18 61460422 61460423 - T SERPINB7 Frame_Shift_Ins p.S85Ffs*2 0.11 TCGA-BR-6452-01 18 61562597 61562597 T C SERPINB2 Missense_Mutation p.Y90H 0.08 tolerated(0.44) possibly_damaging(0.879) TCGA-BR-6452-01 18 63547677 63547677 A G CDH7 Silent p.K635K 0.07 TCGA-BR-6452-01 18 64212087 64212087 T C CDH19 Missense_Mutation p.T277A 0.10 deleterious(0.03) benign(0.006) TCGA-BR-6452-01 18 65180565 65180565 T C DSEL Silent p.T437T 0.09 TCGA-BR-6452-01 18 659673 659673 T C TYMS Missense_Mutation p.F80L 0.08 deleterious(0.01) benign(0.159) TCGA-BR-6452-01 18 67692051 67692051 A C RTTN Missense_Mutation p.L1953V 0.08 tolerated(0.16) benign(0.229) TCGA-BR-6452-01 18 67695984 67695984 A G RTTN Silent p.C1933C 0.09 TCGA-BR-6452-01 18 67794748 67794748 C T RTTN Missense_Mutation p.A1125T 0.16 tolerated(0.17) benign(0.056) TCGA-BR-6452-01 18 67802453 67802453 A C RTTN Missense_Mutation p.L951R 0.08 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 18 67813010 67813010 C T RTTN Silent p.S773S 0.08 TCGA-BR-6452-01 18 67816137 67816137 G A RTTN Missense_Mutation p.S770L 0.21 tolerated(0.47) benign(0.004) TCGA-BR-6452-01 18 67860532 67860532 C T RTTN Silent p.A333A 0.25 TCGA-BR-6452-01 18 67993122 67993122 T C SOCS6 Silent p.F406F 0.08 TCGA-BR-6452-01 18 67993331 67993331 G A SOCS6 Missense_Mutation p.R476Q 0.09 deleterious(0.01) benign(0.041) TCGA-BR-6452-01 18 6943249 6943249 G A LAMA1 Silent p.G2999G 0.09 TCGA-BR-6452-01 18 6949194 6949194 A G LAMA1 Missense_Mutation p.V2821A 0.09 tolerated(0.14) benign(0.063) TCGA-BR-6452-01 18 70205945 70205945 T - CBLN2 Frame_Shift_Del p.I142Ffs*21 0.15 TCGA-BR-6452-01 18 7049169 7049169 G A LAMA1 Missense_Mutation p.L226F 0.07 deleterious(0) probably_damaging(0.987) TCGA-BR-6452-01 18 71822396 71822396 A C TIMM21 Missense_Mutation p.R106S 0.07 deleterious(0) probably_damaging(0.911) TCGA-BR-6452-01 18 72186224 72186224 T C CNDP2 Silent p.S417S 0.12 TCGA-BR-6452-01 18 72353051 72353051 T C ZNF407 Missense_Mutation p.M1592T 0.08 deleterious(0) probably_damaging(0.991) TCGA-BR-6452-01 18 72632493 72632493 G A ZNF407 Missense_Mutation p.R1758H 0.18 deleterious(0.01) probably_damaging(0.997) TCGA-BR-6452-01 18 72998442 72998443 - C TSHZ1 Frame_Shift_Ins p.C318Lfs*4 0.20 TCGA-BR-6452-01 18 72999306 72999306 C T TSHZ1 Silent p.G603G 0.10 TCGA-BR-6452-01 18 73139532 73139532 C T SMIM21 5'UTR 0.18 TCGA-BR-6452-01 18 74154214 74154214 T A ZNF516 Missense_Mutation p.H266L 0.14 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 18 74154911 74154911 G T ZNF516 Missense_Mutation p.H34N 0.09 deleterious(0.01) probably_damaging(0.972) TCGA-BR-6452-01 18 74729219 74729219 C T MBP Missense_Mutation p.A49T 0.09 deleterious_low_confidence(0.02) possibly_damaging(0.691) TCGA-BR-6452-01 18 77067105 77067105 C T ATP9B Silent p.I548I 0.26 TCGA-BR-6452-01 18 77089273 77089273 G T ATP9B Nonsense_Mutation p.E636* 0.09 TCGA-BR-6452-01 18 77170667 77170667 A G NFATC1 Missense_Mutation p.N118S 0.08 tolerated(0.84) benign(0.005) TCGA-BR-6452-01 18 77208854 77208854 C T NFATC1 Missense_Mutation p.R474C 0.14 deleterious(0) probably_damaging(0.988) TCGA-BR-6452-01 18 77894427 77894427 A G ADNP2 Silent p.P377P 0.26 TCGA-BR-6452-01 18 77895701 77895701 A T ADNP2 Missense_Mutation p.D802V 0.10 deleterious(0) probably_damaging(0.991) TCGA-BR-6452-01 18 8069784 8069784 C T PTPRM Silent p.H411H 0.14 TCGA-BR-6452-01 18 8376167 8376167 C T PTPRM Missense_Mutation p.P1099S 0.20 deleterious(0.01) benign(0.109) TCGA-BR-6452-01 18 9522203 9522203 A G RALBP1 Missense_Mutation p.E250G 0.10 tolerated(0.23) benign(0.004) TCGA-BR-6452-01 18 9535901 9535901 C T RALBP1 Missense_Mutation p.S645L 0.30 tolerated_low_confidence(0.13) benign(0.007) TCGA-BR-6452-01 19 10108053 10108053 A C COL5A3 Silent p.G419G 0.17 TCGA-BR-6452-01 19 10271067 10271068 - G DNMT1 Frame_Shift_Ins p.K346Qfs*35 0.26 TCGA-BR-6452-01 19 10610576 10610576 G A KEAP1 Missense_Mutation p.S45F 0.10 deleterious(0) probably_damaging(0.998) TCGA-BR-6452-01 19 10662732 10662732 C T ATG4D Silent p.L353L 0.09 TCGA-BR-6452-01 19 1094045 1094045 C T POLR2E Silent p.Q30Q 0.12 TCGA-BR-6452-01 19 11113781 11113781 G A SMARCA4 Missense_Mutation p.G630D 0.10 probably_damaging(0.996) TCGA-BR-6452-01 19 11121158 11121158 T C SMARCA4 Missense_Mutation p.V742A 0.09 probably_damaging(0.992) TCGA-BR-6452-01 19 11135038 11135038 C T SMARCA4 Missense_Mutation p.A1002V 0.19 probably_damaging(0.933) TCGA-BR-6452-01 19 11311643 11311643 G A DOCK6 Missense_Mutation p.P1925L 0.12 deleterious(0) benign(0.349) TCGA-BR-6452-01 19 11473321 11473321 G A DKFZP761J1410 Missense_Mutation p.V241M 0.16 deleterious(0) probably_damaging(0.998) TCGA-BR-6452-01 19 11832634 11832634 C A ZNF823 Missense_Mutation p.G572V 0.09 tolerated(0.53) benign(0.088) TCGA-BR-6452-01 19 12059503 12059503 T C ZNF700 Missense_Mutation p.Y222H 0.08 deleterious(0.03) probably_damaging(0.998) TCGA-BR-6452-01 19 12060238 12060238 A G ZNF700 Missense_Mutation p.T467A 0.11 deleterious(0.04) benign(0.256) TCGA-BR-6452-01 19 12060550 12060550 A G ZNF700 Missense_Mutation p.K571E 0.08 deleterious(0.02) probably_damaging(0.999) TCGA-BR-6452-01 19 12060661 12060661 C T ZNF700 Nonsense_Mutation p.R608* 0.08 TCGA-BR-6452-01 19 12087930 12087930 A C ZNF763 Missense_Mutation p.K30N 0.09 tolerated(0.52) benign(0) TCGA-BR-6452-01 19 12126679 12126679 T C ZNF433 Missense_Mutation p.K335E 0.15 tolerated(1) benign(0.001) TCGA-BR-6452-01 19 12129088 12129088 T C ZNF433 Missense_Mutation p.D11G 0.11 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 19 12244607 12244607 A T ZNF20 Missense_Mutation p.S132T 0.07 tolerated(0.16) benign(0.011) TCGA-BR-6452-01 19 12296931 12296931 A - ZNF136 Frame_Shift_Del p.K46Nfs*18 0.28 TCGA-BR-6452-01 19 1231118 1231118 G A C19orf26 Missense_Mutation p.P379L 0.19 deleterious_low_confidence(0) possibly_damaging(0.713) TCGA-BR-6452-01 19 1231197 1231197 G - C19orf26 Frame_Shift_Del p.Q353Rfs*37 0.13 TCGA-BR-6452-01 19 12430623 12430623 A G ZNF563 Silent p.S72S 0.06 TCGA-BR-6452-01 19 12460857 12460857 T - ZNF442 Frame_Shift_Del p.K514Nfs*18 0.08 TCGA-BR-6452-01 19 12491527 12491527 G T CTD-3105H18.14 3'UTR 0.12 TCGA-BR-6452-01 19 12856292 12856292 C T ASNA1 Silent p.S137S 0.08 TCGA-BR-6452-01 19 12918104 12918104 T C RNASEH2A Missense_Mutation p.V95A 0.08 tolerated(0.24) possibly_damaging(0.683) TCGA-BR-6452-01 19 12984255 12984255 G A MAST1 Silent p.S1127S 0.31 TCGA-BR-6452-01 19 13006890 13006890 A G GCDH Missense_Mutation p.Y197C 0.07 deleterious_low_confidence(0.04) possibly_damaging(0.598) TCGA-BR-6452-01 19 13226211 13226211 G A TRMT1 Missense_Mutation p.P175S 0.10 deleterious(0.01) possibly_damaging(0.593) TCGA-BR-6452-01 19 13255675 13255675 C T STX10 Missense_Mutation p.D161N 0.17 tolerated(0.13) benign(0.004) TCGA-BR-6452-01 19 13256151 13256151 G A STX10 Missense_Mutation p.A141V 0.11 tolerated(0.6) benign(0) TCGA-BR-6452-01 19 13414640 13414640 C - CACNA1A Frame_Shift_Del p.G682Afs*15 0.12 TCGA-BR-6452-01 19 14040966 14040966 G T CC2D1A Missense_Mutation p.R929M 0.09 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 19 14043557 14043557 G A PODNL1 Silent p.C500C 0.10 TCGA-BR-6452-01 19 14208462 14208462 G A PRKACA Missense_Mutation p.R191C 0.16 deleterious(0.02) probably_damaging(0.936) TCGA-BR-6452-01 19 14266323 14266323 C T LPHN1 Missense_Mutation p.A1053T 0.10 deleterious(0) possibly_damaging(0.904) TCGA-BR-6452-01 19 14273431 14273431 G A LPHN1 Silent p.P399P 0.21 TCGA-BR-6452-01 19 14288424 14288424 T A LPHN1 Missense_Mutation p.D68V 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-BR-6452-01 19 14517536 14517536 C T CD97 Silent p.G691G 0.10 TCGA-BR-6452-01 19 1462161 1462161 C T APC2 Missense_Mutation p.T613I 0.36 benign(0.275) TCGA-BR-6452-01 19 15133853 15133853 C T CCDC105 Silent p.Y474Y 0.14 TCGA-BR-6452-01 19 15224405 15224405 G A SYDE1 Silent p.A613A 0.15 TCGA-BR-6452-01 19 15298066 15298066 C T NOTCH3 Missense_Mutation p.A564T 0.24 deleterious(0.03) probably_damaging(0.955) TCGA-BR-6452-01 19 15342831 15342831 G A EPHX3 Silent p.P64P 0.37 TCGA-BR-6452-01 19 15366170 15366170 G A BRD4 Missense_Mutation p.S662F 0.08 possibly_damaging(0.485) TCGA-BR-6452-01 19 15512058 15512058 C T AKAP8L Missense_Mutation p.G240D 0.06 deleterious(0.01) benign(0.382) TCGA-BR-6452-01 19 15535436 15535436 G C WIZ Missense_Mutation p.Q673E 0.16 tolerated(0.26) benign(0.415) TCGA-BR-6452-01 19 15562668 15562668 G A RASAL3 Missense_Mutation p.R992W 0.17 deleterious_low_confidence(0) benign(0) TCGA-BR-6452-01 19 15562916 15562916 G T RASAL3 Missense_Mutation p.S944R 0.19 tolerated(0.16) benign(0.048) TCGA-BR-6452-01 19 15566970 15566970 C T RASAL3 Missense_Mutation p.A556T 0.27 tolerated(0.6) benign(0.026) TCGA-BR-6452-01 19 15752201 15752201 C T CYP4F3 Intron 0.19 TCGA-BR-6452-01 19 1585094 1585094 C T MBD3 Missense_Mutation p.S77N 0.15 tolerated(0.55) benign(0.002) TCGA-BR-6452-01 19 16000460 16000460 G T CYP4F2 Missense_Mutation p.L231I 0.12 deleterious(0.02) possibly_damaging(0.571) TCGA-BR-6452-01 19 16633994 16633994 G - CHERP Frame_Shift_Del p.H617Mfs*38 0.24 TCGA-BR-6452-01 19 16790815 16790815 C T TMEM38A Missense_Mutation p.R49C 0.23 deleterious(0.03) benign(0.025) TCGA-BR-6452-01 19 17007077 17007077 G A CPAMD8 Missense_Mutation p.P1826L 0.18 tolerated_low_confidence(0.58) benign(0) TCGA-BR-6452-01 19 17088263 17088263 C T CPAMD8 Missense_Mutation p.R605H 0.10 tolerated(0.17) benign(0.157) TCGA-BR-6452-01 19 17394488 17394488 C - ANKLE1 Frame_Shift_Del p.P307Hfs*30 0.15 TCGA-BR-6452-01 19 17487970 17487970 A G PLVAP Missense_Mutation p.L43P 0.09 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 19 17664550 17664550 A G FAM129C 3'UTR 0.15 TCGA-BR-6452-01 19 17759367 17759367 C T UNC13A Silent p.T563T 0.11 TCGA-BR-6452-01 19 17774358 17774358 C T UNC13A Missense_Mutation p.G181D 0.17 deleterious_low_confidence(0) benign(0.013) TCGA-BR-6452-01 19 17780379 17780379 C T UNC13A Missense_Mutation p.R126H 0.42 tolerated_low_confidence(0.09) benign(0.001) TCGA-BR-6452-01 19 17845130 17845130 G A MAP1S Missense_Mutation p.A1025T 0.38 deleterious(0.01) benign(0.113) TCGA-BR-6452-01 19 17943652 17943652 C T JAK3 Missense_Mutation p.D813N 0.18 deleterious(0.02) possibly_damaging(0.891) TCGA-BR-6452-01 19 1795914 1795914 C A ATP8B3 Missense_Mutation p.R672M 0.11 deleterious(0.01) possibly_damaging(0.516) TCGA-BR-6452-01 19 17988883 17988883 G T SLC5A5 Missense_Mutation p.R317L 0.10 tolerated(0.65) benign(0.037) TCGA-BR-6452-01 19 1827534 1827534 C T REXO1 Silent p.P418P 0.13 TCGA-BR-6452-01 19 1827735 1827735 C T REXO1 Silent p.P351P 0.20 TCGA-BR-6452-01 19 18329232 18329232 T C PDE4C Missense_Mutation p.Y381C 0.08 deleterious(0) probably_damaging(0.977) TCGA-BR-6452-01 19 18547813 18547813 T G ISYNA1 Missense_Mutation p.M129L 0.08 tolerated(0.08) benign(0.419) TCGA-BR-6452-01 19 18707568 18707568 G T CRLF1 Nonsense_Mutation p.C296* 0.10 TCGA-BR-6452-01 19 18876229 18876229 G A CRTC1 Missense_Mutation p.G317D 0.11 tolerated(0.09) benign(0.139) TCGA-BR-6452-01 19 18965708 18965708 C T UPF1 Missense_Mutation p.T429M 0.17 deleterious(0.01) benign(0.182) TCGA-BR-6452-01 19 18981026 18981026 C T GDF1 Missense_Mutation p.V31M 0.30 tolerated(0.1) unknown(0) TCGA-BR-6452-01 19 19040120 19040120 A G HOMER3 3'UTR 0.12 TCGA-BR-6452-01 19 19040352 19040352 C T HOMER3 Missense_Mutation p.R329Q 0.62 tolerated(0.18) probably_damaging(0.99) TCGA-BR-6452-01 19 19120711 19120711 T C SUGP2 Missense_Mutation p.D764G 0.06 tolerated(0.08) benign(0.002) TCGA-BR-6452-01 19 19231817 19231817 C - TMEM161A Frame_Shift_Del p.R358Lfs*14 0.23 TCGA-BR-6452-01 19 19308333 19308333 A G RFXANK Missense_Mutation p.D114G 0.11 tolerated(0.19) benign(0.002) TCGA-BR-6452-01 19 19371751 19371751 G A HAPLN4 Nonsense_Mutation p.Q119* 0.24 TCGA-BR-6452-01 19 19626044 19626044 G A TSSK6 Missense_Mutation p.R65W 0.24 deleterious(0.03) probably_damaging(0.997) TCGA-BR-6452-01 19 19655293 19655293 C T CILP2 Missense_Mutation p.L647F 0.07 tolerated(1) benign(0.039) TCGA-BR-6452-01 19 19745618 19745618 T C GMIP Missense_Mutation p.K624E 0.20 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 19 19758026 19758026 T C ATP13A1 Missense_Mutation p.Y1006C 0.11 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 19 19766929 19766929 C T ATP13A1 Missense_Mutation p.V383I 0.34 tolerated(0.42) benign(0.171) TCGA-BR-6452-01 19 19905511 19905511 T C ZNF506 Silent p.K395K 0.09 TCGA-BR-6452-01 19 20003500 20003500 G A ZNF253 Missense_Mutation p.V482M 0.09 deleterious(0.01) possibly_damaging(0.527) TCGA-BR-6452-01 19 20117228 20117228 T C ZNF682 Silent p.V361V 0.10 TCGA-BR-6452-01 19 20117540 20117540 G A ZNF682 Silent p.Y257Y 0.09 TCGA-BR-6452-01 19 20808338 20808338 T - ZNF626 Frame_Shift_Del p.G116Dfs*3 0.25 TCGA-BR-6452-01 19 2102260 2102260 T C AP3D1 Missense_Mutation p.N1187S 0.06 tolerated(0.51) possibly_damaging(0.486) TCGA-BR-6452-01 19 21131805 21131805 A G ZNF85 Missense_Mutation p.N162S 0.09 tolerated(0.09) benign(0.259) TCGA-BR-6452-01 19 21324943 21324943 G A ZNF431 5'UTR 0.11 TCGA-BR-6452-01 19 21477270 21477270 A T ZNF708 Missense_Mutation p.N166K 0.10 tolerated(1) benign(0.004) TCGA-BR-6452-01 19 21607090 21607090 A C ZNF493 Missense_Mutation p.K543N 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-BR-6452-01 19 21607791 21607791 T C ZNF493 3'UTR 0.19 TCGA-BR-6452-01 19 21720176 21720176 A G ZNF429 Missense_Mutation p.T441A 0.16 tolerated(0.16) benign(0.006) TCGA-BR-6452-01 19 21909534 21909534 C A ZNF100 Missense_Mutation p.S527I 0.10 tolerated(0.54) benign(0.002) TCGA-BR-6452-01 19 21910359 21910359 C T ZNF100 Missense_Mutation p.R252K 0.13 tolerated(1) benign(0.015) TCGA-BR-6452-01 19 21992491 21992491 T - ZNF43 Frame_Shift_Del p.D117Tfs*36 0.10 TCGA-BR-6452-01 19 2202760 2202760 T C DOT1L Missense_Mutation p.F257L 0.07 tolerated(0.07) probably_damaging(0.963) TCGA-BR-6452-01 19 2213891 2213893 AGA - DOT1L In_Frame_Del p.K569del 0.09 TCGA-BR-6452-01 19 22364184 22364184 A G ZNF676 Missense_Mutation p.V112A 0.10 deleterious(0.04) benign(0.091) TCGA-BR-6452-01 19 22364272 22364272 T - ZNF676 Frame_Shift_Del p.I83Lfs*23 0.09 TCGA-BR-6452-01 19 2280883 2280883 G - C19orf35 Frame_Shift_Del p.T17Pfs*48 0.20 TCGA-BR-6452-01 19 22941684 22941684 A G ZNF99 Missense_Mutation p.C343R 0.12 deleterious(0) probably_damaging(0.983) TCGA-BR-6452-01 19 23159582 23159582 G - ZNF728 Frame_Shift_Del p.S186Yfs*63 0.17 TCGA-BR-6452-01 19 23316907 23316907 C T ZNF730 Missense_Mutation p.A10V 0.19 tolerated(0.07) probably_damaging(0.983) TCGA-BR-6452-01 19 2405436 2405436 G - TMPRSS9 Frame_Shift_Del p.E213Sfs*86 0.25 TCGA-BR-6452-01 19 2435063 2435063 C T LMNB2 Missense_Mutation p.R264Q 0.13 deleterious(0.01) probably_damaging(0.98) TCGA-BR-6452-01 19 2807650 2807650 C T THOP1 Missense_Mutation p.T366M 0.17 deleterious(0.05) probably_damaging(0.977) TCGA-BR-6452-01 19 2807711 2807711 C T THOP1 Silent p.G386G 0.18 TCGA-BR-6452-01 19 2807736 2807736 C T THOP1 Missense_Mutation p.R395W 0.20 deleterious(0.02) possibly_damaging(0.687) TCGA-BR-6452-01 19 2918314 2918314 T C ZNF57 3'UTR 0.17 TCGA-BR-6452-01 19 3005923 3005923 C T TLE2 Missense_Mutation p.G515D 0.08 deleterious(0.03) possibly_damaging(0.658) TCGA-BR-6452-01 19 30308410 30308410 C T CCNE1 Missense_Mutation p.P142S 0.09 deleterious(0.01) possibly_damaging(0.803) TCGA-BR-6452-01 19 31039501 31039501 T C ZNF536 Missense_Mutation p.V992A 0.18 deleterious(0.01) benign(0.42) TCGA-BR-6452-01 19 3121099 3121099 G A GNA11 Silent p.T334T 0.22 TCGA-BR-6452-01 19 3150136 3150136 C T GNA15 Missense_Mutation p.A113V 0.12 tolerated(0.08) probably_damaging(0.909) TCGA-BR-6452-01 19 3155864 3155864 A T GNA15 Missense_Mutation p.I220F 0.12 deleterious(0) possibly_damaging(0.708) TCGA-BR-6452-01 19 31769888 31769888 C T TSHZ3 Missense_Mutation p.A271T 0.14 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 19 3179649 3179649 C T S1PR4 Missense_Mutation p.R287W 0.17 tolerated(0.07) probably_damaging(0.947) TCGA-BR-6452-01 19 33585162 33585162 C T GPATCH1 Silent p.R180R 0.09 TCGA-BR-6452-01 19 33623191 33623191 C T WDR88 Missense_Mutation p.A39V 0.22 tolerated_low_confidence(1) benign(0.001) TCGA-BR-6452-01 19 33666372 33666372 T C WDR88 Missense_Mutation p.V438A 0.08 deleterious(0.04) benign(0.086) TCGA-BR-6452-01 19 34180174 34180174 C A CHST8 Missense_Mutation p.L3M 0.12 tolerated_low_confidence(0.22) benign(0.172) TCGA-BR-6452-01 19 34292139 34292139 T C KCTD15 Missense_Mutation p.I45T 0.09 deleterious(0.04) benign(0.348) TCGA-BR-6452-01 19 34839981 34839981 G C KIAA0355 Missense_Mutation p.E916D 0.10 tolerated_low_confidence(0.12) probably_damaging(0.953) TCGA-BR-6452-01 19 34887230 34887230 T C GPI Missense_Mutation p.Y374H 0.09 tolerated_low_confidence(0.12) probably_damaging(0.948) TCGA-BR-6452-01 19 34929585 34929585 G A UBA2 Silent p.P165P 0.20 TCGA-BR-6452-01 19 34935965 34935965 G A UBA2 Missense_Mutation p.R237H 0.32 deleterious(0) benign(0.063) TCGA-BR-6452-01 19 3551131 3551131 C T MFSD12 Silent p.A120A 0.15 TCGA-BR-6452-01 19 35512908 35512908 G T GRAMD1A Missense_Mutation p.G603C 0.16 tolerated(0.1) benign(0.431) TCGA-BR-6452-01 19 35719391 35719391 T C FAM187B Missense_Mutation p.S65G 0.23 tolerated(0.38) benign(0.002) TCGA-BR-6452-01 19 36045887 36045887 G A ATP4A Silent p.T806T 0.15 TCGA-BR-6452-01 19 36109909 36109909 A G HAUS5 Silent p.L379L 0.14 TCGA-BR-6452-01 19 36128350 36128350 A T RBM42 Missense_Mutation p.Y446F 0.10 deleterious(0.02) unknown(0) TCGA-BR-6452-01 19 3620185 3620185 T C CACTIN Missense_Mutation p.E275G 0.38 tolerated(0.06) possibly_damaging(0.721) TCGA-BR-6452-01 19 36224532 36224532 C T KMT2B Missense_Mutation p.R2332C 0.33 benign(0.095) TCGA-BR-6452-01 19 36230664 36230664 A G IGFLR1 Missense_Mutation p.L223P 0.09 tolerated(0.14) benign(0.031) TCGA-BR-6452-01 19 36276165 36276165 G - ARHGAP33 Frame_Shift_Del p.G600Afs*32 0.15 TCGA-BR-6452-01 19 36348058 36348062 CTCTT - KIRREL2 Frame_Shift_Del p.F14Lfs*43 0.21 TCGA-BR-6452-01 19 36575648 36575648 T C WDR62 Splice_Site p.X548_splice 0.15 TCGA-BR-6452-01 19 36604659 36604659 A G POLR2I Nonstop_Mutation p.*126Rext*? 0.19 TCGA-BR-6452-01 19 37037873 37037873 A G ZNF529 Silent p.T529T 0.17 TCGA-BR-6452-01 19 37038467 37038467 A G ZNF529 Silent p.I331I 0.13 TCGA-BR-6452-01 19 37117166 37117166 C A ZNF382 Missense_Mutation p.L123I 0.11 tolerated(0.36) benign(0.002) TCGA-BR-6452-01 19 37209872 37209873 - T ZNF567 Frame_Shift_Ins p.L53Ffs*13 0.11 TCGA-BR-6452-01 19 3733891 3733891 C T TJP3 Silent p.S295S 0.10 TCGA-BR-6452-01 19 37442051 37442051 A - ZNF568 3'Flank 0.28 TCGA-BR-6452-01 19 37733974 37733974 A - ZNF383 Frame_Shift_Del p.K280Nfs*162 0.09 TCGA-BR-6452-01 19 37903927 37903927 T C ZNF569 Missense_Mutation p.T545A 0.12 deleterious(0) probably_damaging(0.971) TCGA-BR-6452-01 19 38190374 38190374 A G ZNF607 Missense_Mutation p.Y220H 0.06 deleterious(0) benign(0.154) TCGA-BR-6452-01 19 3834970 3834970 G A ZFR2 Missense_Mutation p.P22L 0.30 deleterious(0.01) benign(0.012) TCGA-BR-6452-01 19 38877100 38877100 G A GGN Silent p.L268L 0.16 TCGA-BR-6452-01 19 39028590 39028590 G A RYR1 Silent p.G3893G 0.11 TCGA-BR-6452-01 19 39334720 39334720 C T HNRNPL Silent p.Q245Q 0.15 TCGA-BR-6452-01 19 39597717 39597717 A T PAPL Missense_Mutation p.D415V 0.09 tolerated(0.57) benign(0.21) TCGA-BR-6452-01 19 39669173 39669173 C T PAK4 Missense_Mutation p.P577L 0.23 tolerated(0.13) possibly_damaging(0.831) TCGA-BR-6452-01 19 39734787 39734787 C T IFNL3 Missense_Mutation p.R90H 0.14 deleterious(0.03) possibly_damaging(0.812) TCGA-BR-6452-01 19 39804819 39804819 G A LRFN1 Silent p.C386C 0.12 TCGA-BR-6452-01 19 39866351 39866351 C - SAMD4B Frame_Shift_Del p.Q245Rfs*57 0.09 TCGA-BR-6452-01 19 39888188 39888188 A C MED29 Missense_Mutation p.Q172P 0.10 tolerated(0.05) benign(0.065) TCGA-BR-6452-01 19 39906037 39906037 G A PLEKHG2 Missense_Mutation p.G146D 0.11 deleterious_low_confidence(0.04) probably_damaging(0.994) TCGA-BR-6452-01 19 39923890 39923890 G T RPS16 3'UTR 0.10 TCGA-BR-6452-01 19 39995888 39995888 A T DLL3 Missense_Mutation p.E297V 0.13 tolerated(0.05) probably_damaging(0.999) TCGA-BR-6452-01 19 4013158 4013158 A G PIAS4 Missense_Mutation p.T89A 0.10 tolerated(0.58) benign(0) TCGA-BR-6452-01 19 40197239 40197239 A G LGALS14 Silent p.V35V 0.09 TCGA-BR-6452-01 19 40225044 40225044 C T CLC Missense_Mutation p.R61H 0.08 tolerated(0.54) benign(0.009) TCGA-BR-6452-01 19 40316612 40316612 G - DYRK1B Frame_Shift_Del p.Q545Sfs*19 0.22 TCGA-BR-6452-01 19 40316660 40316660 G T DYRK1B Missense_Mutation p.P529T 0.11 tolerated_low_confidence(0.09) benign(0.034) TCGA-BR-6452-01 19 40362933 40362933 C T FCGBP Missense_Mutation p.S5046N 0.09 benign(0.241) TCGA-BR-6452-01 19 40364395 40364395 A G FCGBP Silent p.G4749G 0.35 TCGA-BR-6452-01 19 40485987 40485987 G A PSMC4 Silent p.E284E 0.15 TCGA-BR-6452-01 19 40581085 40581085 A G ZNF780A Missense_Mutation p.C423R 0.07 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 19 40715080 40715080 C - MAP3K10 Frame_Shift_Del p.P504Lfs*10 0.10 TCGA-BR-6452-01 19 4099374 4099374 C A MAP2K2 Silent p.S248S 0.29 TCGA-BR-6452-01 19 41183257 41183257 T C NUMBL Missense_Mutation p.K204E 0.12 deleterious(0.05) benign(0.099) TCGA-BR-6452-01 19 4157037 4157037 C A CREB3L3 Missense_Mutation p.L68M 0.11 deleterious(0) probably_damaging(0.933) TCGA-BR-6452-01 19 41594537 41594537 T A CYP2A13 Missense_Mutation p.M54K 0.11 deleterious(0) possibly_damaging(0.89) TCGA-BR-6452-01 19 41704403 41704403 C T CYP2S1 Missense_Mutation p.A177V 0.09 tolerated(0.09) possibly_damaging(0.876) TCGA-BR-6452-01 19 41744385 41744385 C - AXL Frame_Shift_Del p.P337Lfs*29 0.15 TCGA-BR-6452-01 19 41765646 41765647 - C AXL Frame_Shift_Ins p.T844Nfs*6 0.23 TCGA-BR-6452-01 19 41889623 41889623 A G TMEM91 Missense_Mutation p.N122D 0.10 tolerated(0.11) benign(0.272) TCGA-BR-6452-01 19 41931597 41931597 T C B3GNT8 Missense_Mutation p.T363A 0.10 tolerated(0.73) benign(0.001) TCGA-BR-6452-01 19 42343373 42343373 G T LYPD4 5'UTR 0.21 TCGA-BR-6452-01 19 42383344 42383344 T C CD79A Missense_Mutation p.Y122H 0.15 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 19 42584439 42584439 A G ZNF574 Missense_Mutation p.T561A 0.07 deleterious(0.01) possibly_damaging(0.874) TCGA-BR-6452-01 19 42584644 42584644 T A ZNF574 Missense_Mutation p.V629D 0.13 tolerated(0.24) benign(0.005) TCGA-BR-6452-01 19 42753689 42753689 C T ERF Missense_Mutation p.G192D 0.26 deleterious(0.01) possibly_damaging(0.694) TCGA-BR-6452-01 19 42791268 42791268 C - CIC Frame_Shift_Del p.P111Hfs*94 0.25 TCGA-BR-6452-01 19 42799098 42799098 C - CIC Frame_Shift_Del p.P1529Lfs*91 0.15 TCGA-BR-6452-01 19 42861608 42861608 G A MEGF8 Missense_Mutation p.R1561H 0.23 deleterious(0) probably_damaging(0.983) TCGA-BR-6452-01 19 42911548 42911548 G A LIPE Nonsense_Mutation p.Q639* 0.17 TCGA-BR-6452-01 19 43015763 43015763 T C CEACAM1 Missense_Mutation p.D465G 0.10 tolerated(0.05) benign(0.124) TCGA-BR-6452-01 19 43420352 43420352 A T PSG6 Missense_Mutation p.S118T 0.10 tolerated(0.69) benign(0.008) TCGA-BR-6452-01 19 43439623 43439623 A G PSG7 Silent p.T121T 0.13 TCGA-BR-6452-01 19 43683057 43683057 C T PSG5 Intron 0.05 TCGA-BR-6452-01 19 43968517 43968517 G A LYPD3 Silent p.G57G 0.27 TCGA-BR-6452-01 19 44278390 44278390 G T KCNN4 Missense_Mutation p.L213I 0.19 tolerated(0.9) benign(0.02) TCGA-BR-6452-01 19 44339699 44339699 C A ZNF283 Silent p.S55S 0.23 TCGA-BR-6452-01 19 44418273 44418273 T C ZNF45 Missense_Mutation p.T439A 0.09 deleterious(0) probably_damaging(0.981) TCGA-BR-6452-01 19 44564934 44564934 T C ZNF223 Missense_Mutation p.F59L 0.11 tolerated(0.99) benign(0.016) TCGA-BR-6452-01 19 44738911 44738911 T A ZNF227 Missense_Mutation p.S110T 0.12 tolerated(0.11) benign(0.142) TCGA-BR-6452-01 19 44740625 44740625 G A ZNF227 Missense_Mutation p.G681D 0.10 deleterious(0) probably_damaging(0.998) TCGA-BR-6452-01 19 44890966 44890966 C A ZNF285 Nonsense_Mutation p.E481* 0.25 TCGA-BR-6452-01 19 44892260 44892260 G A ZNF285 Silent p.D49D 0.12 TCGA-BR-6452-01 19 4491791 4491791 C T HDGFRP2 Missense_Mutation p.R213W 0.20 deleterious(0) unknown(0) TCGA-BR-6452-01 19 4511907 4511907 C A PLIN4 Missense_Mutation p.A675S 0.09 tolerated(0.43) benign(0.004) TCGA-BR-6452-01 19 45209070 45209070 A G CEACAM16 Missense_Mutation p.Y291C 0.17 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 19 45381765 45381765 A G PVRL2 Intron 0.15 TCGA-BR-6452-01 19 45391415 45391415 C T PVRL2 Missense_Mutation p.P466S 0.10 tolerated(0.38) benign(0.007) TCGA-BR-6452-01 19 45477800 45477800 C T CLPTM1 Silent p.S138S 0.17 TCGA-BR-6452-01 19 4548328 4548328 C T SEMA6B Silent p.G467G 0.12 TCGA-BR-6452-01 19 45540714 45540714 G A RELB Missense_Mutation p.G469D 0.12 tolerated(0.07) benign(0.36) TCGA-BR-6452-01 19 45573341 45573341 C T CLASRP Missense_Mutation p.R646C 0.11 deleterious_low_confidence(0) unknown(0) TCGA-BR-6452-01 19 45860791 45860791 C T ERCC2 Missense_Mutation p.A440T 0.16 deleterious(0) possibly_damaging(0.509) TCGA-BR-6452-01 19 45911723 45911723 C - CD3EAP Frame_Shift_Del p.N168Tfs*14 0.23 TCGA-BR-6452-01 19 45912198 45912199 - C CD3EAP Frame_Shift_Ins p.T327Yfs*81 0.08 TCGA-BR-6452-01 19 45912637 45912637 C T CD3EAP Missense_Mutation p.R471W 0.19 deleterious(0.03) benign(0) TCGA-BR-6452-01 19 46094232 46094232 G A GPR4 Missense_Mutation p.A298V 0.08 tolerated(0.58) benign(0.212) TCGA-BR-6452-01 19 46136131 46136131 G A EML2 Silent p.G367G 0.13 TCGA-BR-6452-01 19 46191820 46191820 G T SNRPD2 Missense_Mutation p.L3I 0.09 deleterious(0.04) benign(0.082) TCGA-BR-6452-01 19 46216103 46216103 C T FBXO46 Silent p.R217R 0.11 TCGA-BR-6452-01 19 46290090 46290090 G A DMWD Silent p.L222L 0.08 TCGA-BR-6452-01 19 46375928 46375928 G A FOXA3 Missense_Mutation p.G222E 0.12 tolerated(0.3) benign(0.001) TCGA-BR-6452-01 19 46832527 46832527 C T HIF3A Missense_Mutation p.L502F 0.13 deleterious(0.01) possibly_damaging(0.78) TCGA-BR-6452-01 19 46996841 46996841 G A PNMAL2 Missense_Mutation p.R628W 0.27 deleterious_low_confidence(0.01) unknown(0) TCGA-BR-6452-01 19 47280550 47280550 C T SLC1A5 Missense_Mutation p.A391T 0.13 deleterious(0) probably_damaging(0.962) TCGA-BR-6452-01 19 47341797 47341797 C T AP2S1 Silent p.T112T 0.13 TCGA-BR-6452-01 19 47424547 47424547 C T ARHGAP35 Missense_Mutation p.A872V 0.11 deleterious(0) probably_damaging(0.998) TCGA-BR-6452-01 19 47570462 47570462 G - ZC3H4 Frame_Shift_Del p.N1022Tfs*122 0.21 TCGA-BR-6452-01 19 47725161 47725161 C T BBC3 Missense_Mutation p.A195T 0.10 tolerated_low_confidence(0.22) unknown(0) TCGA-BR-6452-01 19 48006736 48006736 G A NAPA Missense_Mutation p.A41V 0.14 deleterious(0.02) probably_damaging(0.919) TCGA-BR-6452-01 19 48183932 48183932 C - GLTSCR1 Frame_Shift_Del p.H504Tfs*21 0.09 TCGA-BR-6452-01 19 48239750 48239750 A G EHD2 Missense_Mutation p.H347R 0.22 tolerated(0.28) benign(0.001) TCGA-BR-6452-01 19 48244520 48244520 G A EHD2 Missense_Mutation p.R488H 0.25 tolerated(0.13) benign(0.056) TCGA-BR-6452-01 19 48260324 48260324 C T GLTSCR2 3'Flank 0.12 TCGA-BR-6452-01 19 48525436 48525436 C T ELSPBP1 Missense_Mutation p.A175V 0.08 tolerated(0.24) benign(0.165) TCGA-BR-6452-01 19 48624533 48624533 A G LIG1 Missense_Mutation p.V760A 0.16 deleterious(0.03) probably_damaging(0.972) TCGA-BR-6452-01 19 49100124 49100124 G A SULT2B1 Silent p.T258T 0.15 TCGA-BR-6452-01 19 49132184 49132184 C T SPHK2 Silent p.R373R 0.12 TCGA-BR-6452-01 19 49247440 49247440 T C IZUMO1 Missense_Mutation p.N137S 0.09 deleterious(0) probably_damaging(0.993) TCGA-BR-6452-01 19 49398379 49398379 C T TULP2 Nonsense_Mutation p.W130* 0.22 TCGA-BR-6452-01 19 49518943 49518946 AGTA - RUVBL2 Splice_Site p.X456_splice 0.20 TCGA-BR-6452-01 19 49649227 49649229 GAG - PPFIA3 In_Frame_Del p.E926del 0.17 TCGA-BR-6452-01 19 49793773 49793773 A G SLC6A16 Intron 0.12 TCGA-BR-6452-01 19 49862738 49862738 G A TEAD2 Missense_Mutation p.A84V 0.07 deleterious(0) probably_damaging(0.994) TCGA-BR-6452-01 19 50042431 50042431 A T RCN3 Missense_Mutation p.Y225F 0.08 deleterious(0.01) benign(0.225) TCGA-BR-6452-01 19 50098300 50098300 A G PRR12 Silent p.P236P 0.32 TCGA-BR-6452-01 19 5040024 5040024 T C KDM4B Splice_Site p.X106_splice 0.18 TCGA-BR-6452-01 19 50475331 50475331 C T VRK3 3'Flank 0.10 TCGA-BR-6452-01 19 50881803 50881803 G A NR1H2 Missense_Mutation p.R166Q 0.20 tolerated(0.21) benign(0.008) TCGA-BR-6452-01 19 51022237 51022237 G A LRRC4B Missense_Mutation p.R245C 0.14 deleterious(0) probably_damaging(0.944) TCGA-BR-6452-01 19 51189547 51189547 C T SHANK1 Missense_Mutation p.G842S 0.14 probably_damaging(0.937) TCGA-BR-6452-01 19 51219729 51219729 G A SHANK1 Missense_Mutation p.L88F 0.12 probably_damaging(0.994) TCGA-BR-6452-01 19 51297733 51297733 C T ACPT Missense_Mutation p.A294V 0.24 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 19 51329891 51329891 C T KLK15 Missense_Mutation p.A202T 0.08 tolerated(1) benign(0.001) TCGA-BR-6452-01 19 51465041 51465041 A C KLK6 Missense_Mutation p.L181V 0.12 tolerated(1) benign(0) TCGA-BR-6452-01 19 51518083 51518083 C T KLK10 Nonsense_Mutation p.W268* 0.07 TCGA-BR-6452-01 19 52004836 52004836 T - SIGLEC12 Frame_Shift_Del p.N51Mfs*20 0.12 TCGA-BR-6452-01 19 52216730 52216730 C T HAS1 Missense_Mutation p.V563M 0.15 deleterious(0.01) unknown(0) TCGA-BR-6452-01 19 52327875 52327875 T - FPR3 Frame_Shift_Del p.F293Lfs*21 0.24 TCGA-BR-6452-01 19 52399760 52399760 G A ZNF649 Missense_Mutation p.T68I 0.09 tolerated(0.3) benign(0.007) TCGA-BR-6452-01 19 52448122 52448122 C G ZNF613 Missense_Mutation p.S329C 0.09 deleterious(0.04) probably_damaging(0.927) TCGA-BR-6452-01 19 52448840 52448840 T C ZNF613 Silent p.S568S 0.10 TCGA-BR-6452-01 19 52468066 52468066 T - ZNF350 3'UTR 0.31 TCGA-BR-6452-01 19 52520093 52520093 T C ZNF614 Missense_Mutation p.N253S 0.10 deleterious(0) benign(0.007) TCGA-BR-6452-01 19 52521298 52521298 C T ZNF614 Nonsense_Mutation p.W67* 0.15 TCGA-BR-6452-01 19 52618188 52618188 T - ZNF616 Frame_Shift_Del p.K743Nfs*23 0.08 TCGA-BR-6452-01 19 52619658 52619658 A T ZNF616 Missense_Mutation p.N253K 0.09 tolerated(1) benign(0.001) TCGA-BR-6452-01 19 52658789 52658789 G T ZNF836 Missense_Mutation p.P716H 0.10 tolerated(1) probably_damaging(0.998) TCGA-BR-6452-01 19 52659094 52659094 C T ZNF836 Silent p.V614V 0.07 TCGA-BR-6452-01 19 52659268 52659268 A G ZNF836 Silent p.C556C 0.09 TCGA-BR-6452-01 19 52785388 52785388 G A ZNF766 Missense_Mutation p.A15T 0.23 deleterious(0.04) probably_damaging(0.997) TCGA-BR-6452-01 19 52794465 52794465 T C ZNF766 3'UTR 0.10 TCGA-BR-6452-01 19 52825414 52825414 G A ZNF480 Missense_Mutation p.R304Q 0.13 tolerated(0.69) benign(0.002) TCGA-BR-6452-01 19 53057692 53057692 A - ZNF808 Frame_Shift_Del p.K509Nfs*27 0.09 TCGA-BR-6452-01 19 53117122 53117122 A C ZNF83 Silent p.P232P 0.09 TCGA-BR-6452-01 19 53270810 53270810 T A ZNF600 Missense_Mutation p.T67S 0.10 tolerated(0.08) benign(0.112) TCGA-BR-6452-01 19 53384506 53384506 A T ZNF320 Missense_Mutation p.H291Q 0.10 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 19 53572543 53572543 T C ZNF160 Missense_Mutation p.H415R 0.08 deleterious(0) probably_damaging(0.921) TCGA-BR-6452-01 19 53612488 53612488 T C ZNF415 Silent p.K270K 0.15 TCGA-BR-6452-01 19 53669504 53669504 C T ZNF665 Missense_Mutation p.S80N 0.07 tolerated(0.09) benign(0.015) TCGA-BR-6452-01 19 53855495 53855495 T C ZNF845 Missense_Mutation p.Y523H 0.12 deleterious(0.01) probably_damaging(0.977) TCGA-BR-6452-01 19 53884297 53884297 G A ZNF525 Silent p.Q155Q 0.25 TCGA-BR-6452-01 19 54139969 54139969 G A DPRX Silent p.L101L 0.08 TCGA-BR-6452-01 19 54444820 54444820 G A CACNG7 Missense_Mutation p.R174H 0.19 tolerated(0.3) benign(0.005) TCGA-BR-6452-01 19 5455652 5455652 G T ZNRF4 Missense_Mutation p.K50N 0.12 tolerated_low_confidence(0.06) benign(0.074) TCGA-BR-6452-01 19 54710226 54710226 G A RPS9 Silent p.K101K 0.14 TCGA-BR-6452-01 19 54824312 54824312 G T LILRA5 5'UTR 0.21 TCGA-BR-6452-01 19 54962479 54962479 C T LENG8 5'UTR 0.09 TCGA-BR-6452-01 19 54969365 54969365 T C LENG8 Silent p.F662F 0.11 TCGA-BR-6452-01 19 54969555 54969555 G A LENG8 Missense_Mutation p.A699T 0.11 deleterious(0) probably_damaging(0.992) TCGA-BR-6452-01 19 55106363 55106363 A G LILRA1 Missense_Mutation p.S102G 0.08 deleterious(0.02) benign(0.282) TCGA-BR-6452-01 19 55282338 55282338 T C KIR2DL1 Splice_Site p.X24_splice 0.22 TCGA-BR-6452-01 19 55445028 55445028 G T NLRP7 Missense_Mutation p.L851M 0.14 deleterious(0) probably_damaging(0.995) TCGA-BR-6452-01 19 55539169 55539169 G A GP6 Silent p.D129D 0.08 TCGA-BR-6452-01 19 55597335 55597335 A G EPS8L1 Silent p.V504V 0.08 TCGA-BR-6452-01 19 55644293 55644293 C T TNNT1 Missense_Mutation p.R276H 0.31 deleterious(0.03) probably_damaging(0.997) TCGA-BR-6452-01 19 5592843 5592843 G A SAFB2 Missense_Mutation p.R755C 0.12 deleterious(0) benign(0.155) TCGA-BR-6452-01 19 56089958 56089958 C T ZNF579 Missense_Mutation p.E350K 0.33 tolerated(0.16) possibly_damaging(0.636) TCGA-BR-6452-01 19 56166521 56166521 T C U2AF2 Splice_Site p.X17_splice 0.17 TCGA-BR-6452-01 19 56203213 56203213 G A EPN1 Missense_Mutation p.V372I 0.09 tolerated(0.45) benign(0.024) TCGA-BR-6452-01 19 56243849 56243849 C A NLRP9 Nonsense_Mutation p.E450* 0.07 TCGA-BR-6452-01 19 56244646 56244646 A - NLRP9 Frame_Shift_Del p.F184Sfs*7 0.10 TCGA-BR-6452-01 19 56300170 56300170 T C NLRP11 Intron 0.12 TCGA-BR-6452-01 19 56303730 56303730 T - NLRP11 Frame_Shift_Del p.N817Ifs*7 0.21 TCGA-BR-6452-01 19 56369592 56369592 C T NLRP4 Missense_Mutation p.A278V 0.20 deleterious(0.01) possibly_damaging(0.898) TCGA-BR-6452-01 19 56369735 56369735 A G NLRP4 Missense_Mutation p.N326D 0.11 tolerated(0.18) benign(0.017) TCGA-BR-6452-01 19 56370579 56370579 A G NLRP4 Missense_Mutation p.Q607R 0.22 tolerated(0.24) benign(0.104) TCGA-BR-6452-01 19 56539246 56539246 C T NLRP5 Silent p.D549D 0.24 TCGA-BR-6452-01 19 56565026 56565026 G A NLRP5 Missense_Mutation p.A1051T 0.09 tolerated(0.06) possibly_damaging(0.77) TCGA-BR-6452-01 19 56702324 56702324 G A ZSCAN5B Silent p.D207D 0.24 TCGA-BR-6452-01 19 56952773 56952773 T C ZNF667 Missense_Mutation p.T531A 0.09 tolerated(0.65) possibly_damaging(0.571) TCGA-BR-6452-01 19 57089759 57089759 T C ZNF470 Silent p.C654C 0.09 TCGA-BR-6452-01 19 5714193 5714193 C G LONP1 Splice_Site p.X173_splice 0.28 TCGA-BR-6452-01 19 57175250 57175250 C T ZNF835 Silent p.T439T 0.15 TCGA-BR-6452-01 19 57176405 57176405 G A ZNF835 Silent p.R54R 0.11 TCGA-BR-6452-01 19 57327048 57327048 T G PEG3 Missense_Mutation p.E921A 0.08 tolerated(0.21) benign(0.109) TCGA-BR-6452-01 19 57328459 57328459 G A PEG3 Missense_Mutation p.P451S 0.08 tolerated(0.06) benign(0.393) TCGA-BR-6452-01 19 57347438 57347438 G A PEG3 5'UTR 0.58 TCGA-BR-6452-01 19 57641113 57641113 T C USP29 Missense_Mutation p.V357A 0.07 tolerated(1) benign(0.006) TCGA-BR-6452-01 19 57647393 57647393 G A ZIM3 Silent p.V104V 0.07 TCGA-BR-6452-01 19 57724326 57724326 A G ZNF264 Missense_Mutation p.T621A 0.10 deleterious_low_confidence(0.05) benign(0.013) TCGA-BR-6452-01 19 57839292 57839292 T C ZNF543 Silent p.R154R 0.11 TCGA-BR-6452-01 19 57967256 57967256 C A VN1R1 Missense_Mutation p.S200I 0.21 deleterious(0.02) probably_damaging(0.98) TCGA-BR-6452-01 19 57984675 57984675 G A ZNF772 Silent p.R479R 0.09 TCGA-BR-6452-01 19 58018164 58018164 T - ZNF773 Frame_Shift_Del p.F235Lfs*5 0.26 TCGA-BR-6452-01 19 58049755 58049755 G A ZNF549 Missense_Mutation p.M461I 0.17 tolerated(1) benign(0) TCGA-BR-6452-01 19 58196633 58196633 A G ZNF551 Missense_Mutation p.M29V 0.20 tolerated(1) benign(0) TCGA-BR-6452-01 19 58264668 58264668 A C AC003006.7 Missense_Mutation p.Y57S 0.09 tolerated(0.4) benign(0.01) TCGA-BR-6452-01 19 58319610 58319610 A T ZNF552 Missense_Mutation p.V341D 0.09 tolerated(0.11) benign(0.076) TCGA-BR-6452-01 19 58420088 58420088 A G ZNF417 Missense_Mutation p.Y520H 0.10 tolerated(0.05) benign(0.384) TCGA-BR-6452-01 19 58437734 58437734 C T ZNF418 Silent p.A605A 0.08 TCGA-BR-6452-01 19 58438155 58438155 C T ZNF418 Missense_Mutation p.G465D 0.06 tolerated(0.44) benign(0.227) TCGA-BR-6452-01 19 58453338 58453338 A T ZNF256 Missense_Mutation p.S280T 0.11 tolerated(0.07) probably_damaging(0.997) TCGA-BR-6452-01 19 58490577 58490577 T C ZNF606 Missense_Mutation p.K491E 0.10 deleterious(0) probably_damaging(0.993) TCGA-BR-6452-01 19 58579384 58579384 A G ZNF135 Missense_Mutation p.K535R 0.08 tolerated(0.29) possibly_damaging(0.544) TCGA-BR-6452-01 19 58601478 58601478 G A ZSCAN18 Missense_Mutation p.R109W 0.16 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 19 58640601 58640601 A C ZNF329 Silent p.G90G 0.08 TCGA-BR-6452-01 19 58773443 58773443 C A ZNF544 Missense_Mutation p.P491T 0.11 deleterious(0) probably_damaging(0.998) TCGA-BR-6452-01 19 58805954 58805954 T C ZNF8 Silent p.T260T 0.14 TCGA-BR-6452-01 19 58906110 58906110 A G RPS5 Missense_Mutation p.N203S 0.08 tolerated(0.22) possibly_damaging(0.745) TCGA-BR-6452-01 19 58928251 58928251 G T ZNF584 Missense_Mutation p.Q122H 0.20 deleterious(0) possibly_damaging(0.687) TCGA-BR-6452-01 19 58946066 58946066 A G ZNF132 Missense_Mutation p.S249P 0.09 tolerated(0.2) benign(0.012) TCGA-BR-6452-01 19 58982486 58982486 C T ZNF324 Silent p.S209S 0.30 TCGA-BR-6452-01 19 58988885 58988885 A G ZNF446 Silent p.L100L 0.18 TCGA-BR-6452-01 19 624774 624774 G A POLRMT Missense_Mutation p.P362L 0.08 tolerated(0.24) benign(0.07) TCGA-BR-6452-01 19 6418522 6418522 C T KHSRP Missense_Mutation p.R284H 0.13 deleterious(0) probably_damaging(0.998) TCGA-BR-6452-01 19 6467444 6467445 - A DENND1C 3'UTR 0.11 TCGA-BR-6452-01 19 6475582 6475582 T - DENND1C Frame_Shift_Del p.A281Pfs*8 0.16 TCGA-BR-6452-01 19 6476977 6476977 C A DENND1C Missense_Mutation p.R190M 0.11 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 19 6710735 6710735 T C C3 Missense_Mutation p.Y534C 0.09 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 19 6754060 6754060 T C SH2D3A Intron 0.25 TCGA-BR-6452-01 19 6853059 6853059 G A VAV1 Silent p.E767E 0.09 TCGA-BR-6452-01 19 6921803 6921803 G A EMR1 Missense_Mutation p.C567Y 0.12 deleterious(0) probably_damaging(0.998) TCGA-BR-6452-01 19 6937571 6937571 A G EMR1 Missense_Mutation p.K856R 0.12 tolerated(1) benign(0.007) TCGA-BR-6452-01 19 6937586 6937586 G A EMR1 Missense_Mutation p.G861E 0.09 tolerated(0.1) benign(0.356) TCGA-BR-6452-01 19 7082971 7082971 A T ZNF557 Missense_Mutation p.H170L 0.11 deleterious(0) benign(0.436) TCGA-BR-6452-01 19 7125510 7125510 G A INSR Silent p.D1014D 0.09 TCGA-BR-6452-01 19 7125522 7125522 C T INSR Silent p.V1010V 0.18 TCGA-BR-6452-01 19 7166350 7166350 A G INSR Missense_Mutation p.V559A 0.18 tolerated(0.26) benign(0.003) TCGA-BR-6452-01 19 746586 746586 C A PALM Silent p.A312A 0.23 TCGA-BR-6452-01 19 7569089 7569089 A G C19orf45 Silent p.P220P 0.14 TCGA-BR-6452-01 19 758560 758560 G A MISP Silent p.L538L 0.25 TCGA-BR-6452-01 19 7591654 7591654 C T MCOLN1 Missense_Mutation p.A138V 0.19 tolerated(0.23) benign(0.001) TCGA-BR-6452-01 19 7625995 7625995 C T PNPLA6 Silent p.D1314D 0.17 TCGA-BR-6452-01 19 7692152 7692152 G A XAB2 Nonsense_Mutation p.R167* 0.24 TCGA-BR-6452-01 19 7696662 7696662 A G PCP2 Silent p.S108S 0.11 TCGA-BR-6452-01 19 7794289 7794289 T G CLEC4G Missense_Mutation p.K282T 0.08 tolerated(0.07) benign(0.331) TCGA-BR-6452-01 19 7914150 7914150 G A EVI5L Silent p.S187S 0.08 TCGA-BR-6452-01 19 7976042 7976042 G A MAP2K7 Missense_Mutation p.A285T 0.13 deleterious(0) probably_damaging(0.986) TCGA-BR-6452-01 19 7987422 7987422 T C SNAPC2 Missense_Mutation p.Y260H 0.19 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 19 8175763 8175763 G A FBN3 Silent p.G1433G 0.16 TCGA-BR-6452-01 19 8550638 8550638 C T HNRNPM Silent p.D442D 0.08 TCGA-BR-6452-01 19 8563997 8563997 T C PRAM1 Missense_Mutation p.Q232R 0.16 deleterious(0.01) benign(0.221) TCGA-BR-6452-01 19 8595214 8595214 G A MYO1F Missense_Mutation p.R732C 0.08 deleterious(0) probably_damaging(0.973) TCGA-BR-6452-01 19 868351 868351 A G MED16 Intron 0.20 TCGA-BR-6452-01 19 8953661 8953661 G A MBD3L1 Missense_Mutation p.G103R 0.11 tolerated(0.48) benign(0.079) TCGA-BR-6452-01 19 9003630 9003630 T G MUC16 Missense_Mutation p.E13337A 0.08 possibly_damaging(0.827) TCGA-BR-6452-01 19 9008180 9008180 G A MUC16 Silent p.Y13124Y 0.22 TCGA-BR-6452-01 19 9014204 9014204 C A MUC16 Missense_Mutation p.G12815V 0.09 possibly_damaging(0.53) TCGA-BR-6452-01 19 9019996 9019996 A T MUC16 Missense_Mutation p.L12500H 0.05 probably_damaging(0.948) TCGA-BR-6452-01 19 9024831 9024831 A T MUC16 Missense_Mutation p.V12344D 0.05 possibly_damaging(0.774) TCGA-BR-6452-01 19 9046516 9046516 G A MUC16 Silent p.T11705T 0.09 TCGA-BR-6452-01 19 9047431 9047431 T A MUC16 Silent p.V11400V 0.07 TCGA-BR-6452-01 19 9064309 9064310 - G MUC16 Frame_Shift_Ins p.S7713Lfs*40 0.17 TCGA-BR-6452-01 19 9068197 9068197 G A MUC16 Missense_Mutation p.P6417S 0.07 unknown(0) TCGA-BR-6452-01 19 9072001 9072001 T C MUC16 Missense_Mutation p.K5149E 0.07 unknown(0) TCGA-BR-6452-01 19 9091505 9091505 A G MUC16 Missense_Mutation p.S104P 0.06 unknown(0) TCGA-BR-6452-01 19 9091600 9091600 A G MUC16 Missense_Mutation p.V72A 0.19 unknown(0) TCGA-BR-6452-01 19 9204164 9204164 C A OR1M1 Missense_Mutation p.L82M 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-BR-6452-01 19 9236852 9236852 A G OR7G3 Missense_Mutation p.Y259H 0.13 deleterious(0.01) probably_damaging(0.998) TCGA-BR-6452-01 19 9325015 9325015 T C OR7D4 Missense_Mutation p.T167A 0.07 tolerated(0.06) benign(0.019) TCGA-BR-6452-01 19 9325203 9325203 A - OR7D4 Frame_Shift_Del p.L104* 0.20 TCGA-BR-6452-01 19 9578698 9578698 C T ZNF560 Missense_Mutation p.A309T 0.10 tolerated(0.31) possibly_damaging(0.811) TCGA-BR-6452-01 19 9676744 9676744 A C ZNF121 Missense_Mutation p.F349V 0.18 deleterious(0) probably_damaging(0.99) TCGA-BR-6452-01 19 971952 971952 A G ARID3A Missense_Mutation p.S557G 0.11 tolerated_low_confidence(0.67) unknown(0) TCGA-BR-6452-01 19 9764064 9764064 G A ZNF562 Missense_Mutation p.T281I 0.08 tolerated(0.27) benign(0.007) TCGA-BR-6452-01 19 9764069 9764069 T C ZNF562 Silent p.A279A 0.11 TCGA-BR-6452-01 19 9771486 9771486 C T ZNF562 5'UTR 0.33 TCGA-BR-6452-01 19 9868340 9868340 C T ZNF846 Silent p.T471T 0.16 TCGA-BR-6452-01 19 9960268 9960268 G C PIN1 3'UTR 0.12 TCGA-BR-6452-01 1 100525469 100525469 T C HIAT1 Silent p.G93G 0.08 TCGA-BR-6452-01 1 100983870 100983870 T C CDC14A 3'UTR 0.05 TCGA-BR-6452-01 1 101431466 101431466 T A SLC30A7 Missense_Mutation p.F359I 0.13 deleterious(0.05) probably_damaging(0.981) TCGA-BR-6452-01 1 101458252 101458252 T C DPH5 Missense_Mutation p.Q192R 0.08 tolerated(0.08) possibly_damaging(0.487) TCGA-BR-6452-01 1 10165777 10165777 T A UBE4B Missense_Mutation p.S262T 0.09 tolerated_low_confidence(0.18) benign(0.153) TCGA-BR-6452-01 1 102290762 102290762 G A OLFM3 Missense_Mutation p.P138S 0.12 tolerated(0.52) probably_damaging(0.996) TCGA-BR-6452-01 1 10231209 10231209 G A UBE4B Missense_Mutation p.R1116Q 0.24 deleterious(0) probably_damaging(0.994) TCGA-BR-6452-01 1 10407870 10407871 - T KIF1B Frame_Shift_Ins p.L1239Ffs*17 0.11 TCGA-BR-6452-01 1 104118128 104118128 G A AMY2B Missense_Mutation p.S356N 0.05 deleterious(0) probably_damaging(0.998) TCGA-BR-6452-01 1 10720009 10720009 C T CASZ1 Missense_Mutation p.A364T 0.11 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-BR-6452-01 1 107867139 107867139 T C NTNG1 Missense_Mutation p.I161T 0.07 deleterious(0) probably_damaging(0.977) TCGA-BR-6452-01 1 107973538 107973538 A G NTNG1 Missense_Mutation p.I418M 0.12 tolerated(0.07) benign(0.095) TCGA-BR-6452-01 1 109154855 109154855 G A FAM102B Missense_Mutation p.R115H 0.23 deleterious(0.01) probably_damaging(0.95) TCGA-BR-6452-01 1 109242695 109242695 T - PRPF38B 3'UTR 0.18 TCGA-BR-6452-01 1 109321945 109321945 G A STXBP3 Missense_Mutation p.G241D 0.09 deleterious(0) probably_damaging(0.998) TCGA-BR-6452-01 1 109560141 109560141 T - WDR47 Frame_Shift_Del p.R81Gfs*7 0.08 TCGA-BR-6452-01 1 109795564 109795564 C A CELSR2 Missense_Mutation p.Q955K 0.19 tolerated(0.19) possibly_damaging(0.876) TCGA-BR-6452-01 1 110203856 110203856 G A GSTM4 Missense_Mutation p.A213T 0.06 deleterious(0) probably_damaging(0.974) TCGA-BR-6452-01 1 110555579 110555579 T C AHCYL1 Missense_Mutation p.Y180H 0.12 deleterious(0.02) benign(0.168) TCGA-BR-6452-01 1 110564366 110564366 T C AHCYL1 3'UTR 0.17 TCGA-BR-6452-01 1 110737212 110737212 C T SLC6A17 Silent p.G437G 0.22 TCGA-BR-6452-01 1 111059927 111059927 C A KCNA10 Missense_Mutation p.D495Y 0.09 tolerated_low_confidence(0.1) benign(0.002) TCGA-BR-6452-01 1 111145883 111145883 T C KCNA2 3'UTR 0.13 TCGA-BR-6452-01 1 111490579 111490579 T C LRIF1 3'UTR 0.11 TCGA-BR-6452-01 1 111668915 111668915 C T DRAM2 Missense_Mutation p.D45N 0.10 deleterious(0.01) probably_damaging(1) TCGA-BR-6452-01 1 112020302 112020302 G A C1orf162 Missense_Mutation p.G78S 0.07 tolerated(0.76) benign(0.026) TCGA-BR-6452-01 1 112998596 112998596 A G CTTNBP2NL Missense_Mutation p.Q161R 0.10 tolerated(0.2) probably_damaging(0.996) TCGA-BR-6452-01 1 112998647 112998647 T A CTTNBP2NL Missense_Mutation p.L178H 0.08 tolerated(0.06) probably_damaging(1) TCGA-BR-6452-01 1 113084682 113084682 T - ST7L Frame_Shift_Del p.K507Rfs*19 0.21 TCGA-BR-6452-01 1 11313937 11313937 T C MTOR Missense_Mutation p.I267V 0.09 tolerated(1) benign(0.069) TCGA-BR-6452-01 1 113217525 113217525 C A MOV10 5'UTR 0.19 TCGA-BR-6452-01 1 113238807 113238807 T C MOV10 Missense_Mutation p.V606A 0.23 deleterious(0) benign(0.043) TCGA-BR-6452-01 1 113637348 113637349 - T LRIG2 Frame_Shift_Ins p.G261Wfs*4 0.11 TCGA-BR-6452-01 1 113653183 113653183 T C LRIG2 Silent p.N599N 0.09 TCGA-BR-6452-01 1 114184904 114184904 A T MAGI3 Missense_Mutation p.T578S 0.11 tolerated(0.28) possibly_damaging(0.54) TCGA-BR-6452-01 1 114224940 114224940 T C MAGI3 Intron 0.10 TCGA-BR-6452-01 1 114247337 114247337 T C PHTF1 Missense_Mutation p.K585R 0.08 tolerated(0.07) benign(0.188) TCGA-BR-6452-01 1 114310883 114310883 G T RSBN1 Missense_Mutation p.A596D 0.08 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 1 114320291 114320291 A G RSBN1 Splice_Site p.X505_splice 0.24 TCGA-BR-6452-01 1 114442376 114442376 C A AP4B1 Intron 0.11 TCGA-BR-6452-01 1 114447319 114447319 C A AP4B1 Missense_Mutation p.E7D 0.24 deleterious(0.01) benign(0.086) TCGA-BR-6452-01 1 114450717 114450717 A G DCLRE1B Missense_Mutation p.N148D 0.09 tolerated(0.08) probably_damaging(0.992) TCGA-BR-6452-01 1 114483078 114483078 A - HIPK1 Frame_Shift_Del p.I26* 0.09 TCGA-BR-6452-01 1 114682276 114682276 C T SYT6 Missense_Mutation p.R73Q 0.16 tolerated(0.12) possibly_damaging(0.707) TCGA-BR-6452-01 1 114940429 114940429 A G TRIM33 Silent p.D1075D 0.07 TCGA-BR-6452-01 1 115221074 115221074 T C AMPD1 Silent p.Q357Q 0.12 TCGA-BR-6452-01 1 115576796 115576796 C A TSHB Missense_Mutation p.T122K 0.16 tolerated(0.69) benign(0.243) TCGA-BR-6452-01 1 11591735 11591735 C T PTCHD2 Missense_Mutation p.R1115C 0.14 deleterious(0) possibly_damaging(0.517) TCGA-BR-6452-01 1 11595642 11595642 G A PTCHD2 Missense_Mutation p.V1253I 0.23 tolerated(0.09) benign(0.052) TCGA-BR-6452-01 1 116937812 116937812 G A ATP1A1 Missense_Mutation p.D581N 0.11 tolerated(0.14) benign(0.001) TCGA-BR-6452-01 1 117078661 117078662 - T CD58 Frame_Shift_Ins p.I185Nfs*6 0.12 TCGA-BR-6452-01 1 11734731 11734731 G A MAD2L2 3'UTR 0.20 TCGA-BR-6452-01 1 117552590 117552590 G T CD101 Missense_Mutation p.Q54H 0.09 deleterious(0) probably_damaging(0.978) TCGA-BR-6452-01 1 117561006 117561006 C T CD101 Missense_Mutation p.T614M 0.22 deleterious(0) probably_damaging(0.975) TCGA-BR-6452-01 1 117617696 117617696 G A TTF2 Missense_Mutation p.D164N 0.20 tolerated(0.08) benign(0.006) TCGA-BR-6452-01 1 117634487 117634487 A T TTF2 Missense_Mutation p.D907V 0.11 tolerated(0.07) benign(0.403) TCGA-BR-6452-01 1 118009007 118009007 T C MAN1A2 Missense_Mutation p.Y376H 0.18 deleterious(0.01) possibly_damaging(0.884) TCGA-BR-6452-01 1 118165851 118165851 C T FAM46C Missense_Mutation p.P121S 0.20 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 1 118461256 118461256 T C GDAP2 Silent p.A93A 0.11 TCGA-BR-6452-01 1 118527389 118527389 T C SPAG17 Missense_Mutation p.T1896A 0.11 tolerated(0.53) benign(0.234) TCGA-BR-6452-01 1 118530822 118530822 C T SPAG17 Missense_Mutation p.A1843T 0.17 deleterious(0.02) possibly_damaging(0.765) TCGA-BR-6452-01 1 118629495 118629495 T - SPAG17 Frame_Shift_Del p.K499Rfs*25 0.09 TCGA-BR-6452-01 1 1190610 1190610 G A UBE2J2 Silent p.Y267Y 0.18 TCGA-BR-6452-01 1 119584963 119584963 T C WARS2 Missense_Mutation p.T147A 0.08 tolerated(1) benign(0.001) TCGA-BR-6452-01 1 120056589 120056589 A - HSD3B1 Frame_Shift_Del p.N149Tfs*26 0.08 TCGA-BR-6452-01 1 12198386 12198386 A G TNFRSF8 Missense_Mutation p.Y479C 0.17 tolerated(1) benign(0) TCGA-BR-6452-01 1 1249150 1249150 C T CPSF3L Missense_Mutation p.A313T 0.10 tolerated(0.19) benign(0.03) TCGA-BR-6452-01 1 12726188 12726188 T A AADACL4 Nonsense_Mutation p.Y222* 0.06 TCGA-BR-6452-01 1 1275509 1275509 C T DVL1 Missense_Mutation p.R273H 0.27 tolerated(0.07) probably_damaging(0.923) TCGA-BR-6452-01 1 12855624 12855624 T C PRAMEF1 Missense_Mutation p.Y302H 0.12 tolerated(0.32) benign(0.029) TCGA-BR-6452-01 1 12907311 12907311 C T HNRNPCL1 Missense_Mutation p.E278K 0.06 deleterious(0.01) possibly_damaging(0.777) TCGA-BR-6452-01 1 1325706 1325706 C T CCNL2 Missense_Mutation p.A304T 0.21 tolerated(0.19) probably_damaging(0.994) TCGA-BR-6452-01 1 13719050 13719051 - G PRAMEF17 3'UTR 0.18 TCGA-BR-6452-01 1 1372321 1372322 - C VWA1 Frame_Shift_Ins p.R32Pfs*64 0.13 TCGA-BR-6452-01 1 1391275 1391275 C T ATAD3C Silent p.T181T 0.24 TCGA-BR-6452-01 1 14059379 14059379 T C PRDM2 Splice_Site p.X77_splice 0.10 TCGA-BR-6452-01 1 14105882 14105882 C T PRDM2 Missense_Mutation p.A531V 0.20 benign(0.418) TCGA-BR-6452-01 1 14106661 14106662 GA - PRDM2 Frame_Shift_Del p.E793Nfs*8 0.25 TCGA-BR-6452-01 1 14108310 14108310 A G PRDM2 Silent p.K1340K 0.18 TCGA-BR-6452-01 1 14108484 14108484 A T PRDM2 Silent p.G1398G 0.10 TCGA-BR-6452-01 1 14108568 14108568 T A PRDM2 Missense_Mutation p.N1426K 0.10 unknown(0) TCGA-BR-6452-01 1 14108802 14108802 T C PRDM2 Silent p.S1504S 0.06 TCGA-BR-6452-01 1 144828753 144828753 T C NBPF9 Missense_Mutation p.V674A 0.07 tolerated_low_confidence(0.56) probably_damaging(0.932) TCGA-BR-6452-01 1 144867919 144867919 A G PDE4DIP Splice_Site p.X1840_splice 0.06 TCGA-BR-6452-01 1 144882879 144882879 T G PDE4DIP Missense_Mutation p.N1047T 0.08 deleterious(0.05) possibly_damaging(0.58) TCGA-BR-6452-01 1 144903048 144903048 A G PDE4DIP Intron 0.10 TCGA-BR-6452-01 1 144917847 144917847 C T PDE4DIP Missense_Mutation p.R480Q 0.13 tolerated(0.06) benign(0.18) TCGA-BR-6452-01 1 144921944 144921944 A G PDE4DIP Missense_Mutation p.V362A 0.04 tolerated(0.31) benign(0.02) TCGA-BR-6452-01 1 145368471 145368471 G A NBPF10 Silent p.E3483E 0.04 TCGA-BR-6452-01 1 145535890 145535890 A T ITGA10 Missense_Mutation p.D693V 0.08 tolerated(0.2) possibly_damaging(0.493) TCGA-BR-6452-01 1 145562806 145562806 C T ANKRD35 Silent p.L832L 0.12 TCGA-BR-6452-01 1 145646131 145646131 G A RNF115 Missense_Mutation p.R40K 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-BR-6452-01 1 145762145 145762145 A T PDZK1 Missense_Mutation p.D441V 0.20 tolerated(0.12) benign(0.014) TCGA-BR-6452-01 1 146633349 146633349 G A PRKAB2 Missense_Mutation p.A228V 0.12 tolerated(0.24) possibly_damaging(0.862) TCGA-BR-6452-01 1 146766192 146766192 A G CHD1L Missense_Mutation p.T870A 0.11 deleterious(0.01) benign(0.102) TCGA-BR-6452-01 1 147131101 147131101 G T ACP6 Missense_Mutation p.A178D 0.10 deleterious(0) probably_damaging(0.978) TCGA-BR-6452-01 1 148017632 148017632 G T NBPF14 Silent p.P223P 0.05 TCGA-BR-6452-01 1 148024914 148024914 A G NBPF14 Missense_Mutation p.V34A 0.14 tolerated(0.41) possibly_damaging(0.581) TCGA-BR-6452-01 1 149858906 149858906 A G HIST2H2AC Missense_Mutation p.S128G 0.18 tolerated_low_confidence(0.5) benign(0.001) TCGA-BR-6452-01 1 149880804 149880804 C T SV2A Missense_Mutation p.G440D 0.09 tolerated(0.65) benign(0.158) TCGA-BR-6452-01 1 149884847 149884847 C A SV2A Missense_Mutation p.E182D 0.11 deleterious(0.04) benign(0.317) TCGA-BR-6452-01 1 149900692 149900692 C T MTMR11 3'UTR 0.26 TCGA-BR-6452-01 1 149900796 149900796 A - MTMR11 3'UTR 0.28 TCGA-BR-6452-01 1 149903306 149903306 C T MTMR11 Missense_Mutation p.R379H 0.10 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 1 149916322 149916322 C A OTUD7B Nonsense_Mutation p.G656* 0.21 TCGA-BR-6452-01 1 150065723 150065723 G A VPS45 Missense_Mutation p.G491D 0.09 tolerated(0.08) possibly_damaging(0.783) TCGA-BR-6452-01 1 150131221 150131222 - A PLEKHO1 Frame_Shift_Ins p.T247Nfs*46 0.21 TCGA-BR-6452-01 1 150444378 150444378 C T RPRD2 Missense_Mutation p.T985M 0.19 deleterious_low_confidence(0) benign(0.432) TCGA-BR-6452-01 1 150525402 150525402 C A ADAMTSL4 Missense_Mutation p.P36H 0.25 tolerated(0.12) benign(0.01) TCGA-BR-6452-01 1 150526207 150526207 C - ADAMTSL4 Frame_Shift_Del p.L249Yfs*21 0.12 TCGA-BR-6452-01 1 150531943 150531943 G A ADAMTSL4 Splice_Site p.X981_splice 0.21 TCGA-BR-6452-01 1 151021160 151021160 C T C1orf56 Silent p.T279T 0.06 TCGA-BR-6452-01 1 151214608 151214608 C T PIP5K1A Missense_Mutation p.S458F 0.05 deleterious(0) probably_damaging(0.998) TCGA-BR-6452-01 1 151280078 151280078 T G PI4KB Missense_Mutation p.Q397P 0.15 tolerated(0.16) possibly_damaging(0.786) TCGA-BR-6452-01 1 151315256 151315256 T C RFX5 Missense_Mutation p.I419M 0.10 tolerated_low_confidence(0.06) benign(0.019) TCGA-BR-6452-01 1 151317258 151317258 A G RFX5 Missense_Mutation p.L100P 0.11 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 1 151318753 151318753 C - RFX5 Frame_Shift_Del p.G15Efs*32 0.11 TCGA-BR-6452-01 1 151378320 151378320 C T POGZ Missense_Mutation p.G1064E 0.10 deleterious(0.01) probably_damaging(1) TCGA-BR-6452-01 1 151400884 151400884 C A POGZ Missense_Mutation p.G192C 0.09 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 1 151773766 151773766 C T LINGO4 Missense_Mutation p.R472H 0.19 deleterious(0) benign(0.001) TCGA-BR-6452-01 1 152058504 152058504 T C TCHHL1 Missense_Mutation p.S552G 0.10 tolerated(0.14) benign(0.112) TCGA-BR-6452-01 1 152081767 152081767 C A TCHH Missense_Mutation p.R1309M 0.07 unknown(0) TCGA-BR-6452-01 1 152083746 152083746 G A TCHH Silent p.R649R 0.10 TCGA-BR-6452-01 1 152187976 152187976 A G HRNR Silent p.G2043G 0.06 TCGA-BR-6452-01 1 152188530 152188530 C A HRNR Missense_Mutation p.G1859C 0.04 unknown(0) TCGA-BR-6452-01 1 152193216 152193216 C T HRNR Missense_Mutation p.G297S 0.25 unknown(0) TCGA-BR-6452-01 1 152275456 152275456 T C FLG Missense_Mutation p.Q3969R 0.11 unknown(0) TCGA-BR-6452-01 1 152278805 152278805 G A FLG Missense_Mutation p.H2853Y 0.03 benign(0.21) TCGA-BR-6452-01 1 152282226 152282226 T C FLG Silent p.R1712R 0.20 TCGA-BR-6452-01 1 152285766 152285766 G A FLG Silent p.H532H 0.10 TCGA-BR-6452-01 1 152323458 152323458 T G FLG2 Silent p.S2268S 0.23 TCGA-BR-6452-01 1 152325465 152325465 G A FLG2 Silent p.Y1599Y 0.17 TCGA-BR-6452-01 1 152733357 152733357 T C KPRP Silent p.C431C 0.08 TCGA-BR-6452-01 1 153274910 153274910 G A PGLYRP3 Missense_Mutation p.R235W 0.13 tolerated(0.19) benign(0.012) TCGA-BR-6452-01 1 153303154 153303154 G T PGLYRP4 3'UTR 0.20 TCGA-BR-6452-01 1 153362605 153362605 T - S100A8 Frame_Shift_Del p.S86Afs*10 0.19 TCGA-BR-6452-01 1 153430267 153430267 A G S100A7 3'UTR 0.08 TCGA-BR-6452-01 1 153520239 153520239 A G S100A3 Silent p.Y75Y 0.06 TCGA-BR-6452-01 1 153653743 153653743 T C NPR1 Missense_Mutation p.F337L 0.08 deleterious(0) probably_damaging(0.984) TCGA-BR-6452-01 1 153713206 153713206 C T INTS3 Missense_Mutation p.A77V 0.09 tolerated(0.12) benign(0.255) TCGA-BR-6452-01 1 153782527 153782527 T G GATAD2B 3'UTR 0.17 TCGA-BR-6452-01 1 15390079 15390079 C T KAZN Silent p.P353P 0.31 TCGA-BR-6452-01 1 153914821 153914821 G A DENND4B Missense_Mutation p.R218C 0.20 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 1 153924673 153924673 C - CRTC2 Frame_Shift_Del p.G273Afs*29 0.30 TCGA-BR-6452-01 1 153935110 153935110 C A SLC39A1 Nonsense_Mutation p.E28* 0.10 TCGA-BR-6452-01 1 153947178 153947178 G A JTB Missense_Mutation p.R140W 0.23 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 1 153947216 153947216 C T JTB Missense_Mutation p.R127H 0.19 deleterious(0.05) probably_damaging(0.996) TCGA-BR-6452-01 1 153967602 153967602 A G NUP210L Missense_Mutation p.L1814P 0.13 deleterious(0.01) possibly_damaging(0.677) TCGA-BR-6452-01 1 154091248 154091248 G A NUP210L Missense_Mutation p.H455Y 0.09 deleterious(0.01) possibly_damaging(0.833) TCGA-BR-6452-01 1 154544124 154544124 G A CHRNB2 Silent p.A275A 0.19 TCGA-BR-6452-01 1 154569657 154569657 T C ADAR Missense_Mutation p.E674G 0.11 deleterious(0) probably_damaging(0.992) TCGA-BR-6452-01 1 154570393 154570393 G - ADAR Frame_Shift_Del p.V616Sfs*45 0.11 TCGA-BR-6452-01 1 154897634 154897634 G A PMVK Silent p.L184L 0.07 TCGA-BR-6452-01 1 154924316 154924317 - T PBXIP1 Frame_Shift_Ins p.S45Ifs*22 0.09 TCGA-BR-6452-01 1 155041388 155041388 G - EFNA4 Intron 0.22 TCGA-BR-6452-01 1 155147963 155147963 C A TRIM46 Silent p.A55A 0.09 TCGA-BR-6452-01 1 155154445 155154445 G A TRIM46 Missense_Mutation p.R569Q 0.20 deleterious(0) possibly_damaging(0.866) TCGA-BR-6452-01 1 155169629 155169629 G T THBS3 Missense_Mutation p.L616M 0.09 deleterious(0.01) probably_damaging(0.988) TCGA-BR-6452-01 1 155220430 155220430 G A FAM189B Missense_Mutation p.R383W 0.22 deleterious(0.01) probably_damaging(0.988) TCGA-BR-6452-01 1 155226553 155226553 T A SCAMP3 Missense_Mutation p.K270M 0.13 deleterious(0.05) possibly_damaging(0.838) TCGA-BR-6452-01 1 155289429 155289429 G A FDPS Missense_Mutation p.A292T 0.19 tolerated(0.33) benign(0.016) TCGA-BR-6452-01 1 155290616 155290616 C A RUSC1 5'Flank 0.17 TCGA-BR-6452-01 1 155449639 155449639 A G ASH1L Missense_Mutation p.S1008P 0.08 tolerated_low_confidence(0.51) benign(0.004) TCGA-BR-6452-01 1 155451081 155451081 C T ASH1L Missense_Mutation p.C527Y 0.13 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-BR-6452-01 1 155706792 155706793 - A DAP3 Frame_Shift_Ins p.E352Gfs*3 0.13 TCGA-BR-6452-01 1 155721929 155721929 A T GON4L Missense_Mutation p.S2098T 0.09 tolerated_low_confidence(0.06) benign(0.294) TCGA-BR-6452-01 1 155838037 155838037 C T SYT11 Nonsense_Mutation p.R106* 0.22 TCGA-BR-6452-01 1 155870131 155870131 C T RIT1 3'UTR 0.11 TCGA-BR-6452-01 1 155886463 155886463 T C KIAA0907 Silent p.A502A 0.09 TCGA-BR-6452-01 1 155891401 155891401 G T KIAA0907 Missense_Mutation p.A344D 0.11 deleterious(0.05) benign(0.361) TCGA-BR-6452-01 1 156255498 156255498 C - TMEM79 Frame_Shift_Del p.R163Gfs*17 0.26 TCGA-BR-6452-01 1 156518533 156518533 A G IQGAP3 Silent p.L611L 0.09 TCGA-BR-6452-01 1 156621427 156621427 G T BCAN Nonsense_Mutation p.G415* 0.10 TCGA-BR-6452-01 1 156697311 156697311 T C ISG20L2 Missense_Mutation p.N45S 0.12 tolerated(0.16) benign(0.05) TCGA-BR-6452-01 1 156707205 156707207 CTT - MRPL24 In_Frame_Del p.K212del 0.13 TCGA-BR-6452-01 1 156770332 156770332 T C PRCC 3'UTR 0.19 TCGA-BR-6452-01 1 156779524 156779524 G - SH2D2A Frame_Shift_Del p.Q225Sfs*73 0.23 TCGA-BR-6452-01 1 156814013 156814013 G A INSRR Silent p.L933L 0.09 TCGA-BR-6452-01 1 156916542 156916542 G A ARHGEF11 Missense_Mutation p.A869V 0.11 tolerated(0.26) benign(0.088) TCGA-BR-6452-01 1 156918229 156918229 G A ARHGEF11 Missense_Mutation p.R663W 0.20 deleterious(0.02) probably_damaging(0.964) TCGA-BR-6452-01 1 156941587 156941587 G A ARHGEF11 Missense_Mutation p.R202W 0.17 deleterious(0) probably_damaging(0.988) TCGA-BR-6452-01 1 157488498 157488498 T A FCRL5 Missense_Mutation p.Y912F 0.10 tolerated(0.1) possibly_damaging(0.542) TCGA-BR-6452-01 1 157739769 157739769 T C FCRL2 Missense_Mutation p.E161G 0.12 deleterious(0.02) possibly_damaging(0.762) TCGA-BR-6452-01 1 15833485 15833485 C T CASP9 Missense_Mutation p.R180H 0.10 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 1 158450322 158450322 A T OR10R2 Missense_Mutation p.I219L 0.06 tolerated(0.12) benign(0.075) TCGA-BR-6452-01 1 158517536 158517538 AAG - OR6Y1 In_Frame_Del p.L120del 0.09 TCGA-BR-6452-01 1 158576558 158576558 T C OR10Z1 Silent p.T110T 0.21 TCGA-BR-6452-01 1 158576645 158576645 C T OR10Z1 Silent p.T139T 0.08 TCGA-BR-6452-01 1 158621206 158621206 T A SPTA1 Missense_Mutation p.D1143V 0.08 tolerated(0.07) possibly_damaging(0.903) TCGA-BR-6452-01 1 158687118 158687118 T C OR6K3 Missense_Mutation p.D263G 0.09 deleterious(0.03) benign(0.045) TCGA-BR-6452-01 1 158687335 158687335 C G OR6K3 Missense_Mutation p.D191H 0.14 deleterious(0) probably_damaging(0.982) TCGA-BR-6452-01 1 158724839 158724839 G T OR6K6 Missense_Mutation p.Q78H 0.21 tolerated(0.15) benign(0.005) TCGA-BR-6452-01 1 158986328 158986328 A - IFI16 Frame_Shift_Del p.K131Nfs*63 0.12 TCGA-BR-6452-01 1 159683503 159683503 T A CRP Missense_Mutation p.N163Y 0.09 deleterious(0) benign(0.291) TCGA-BR-6452-01 1 159778831 159778831 A G FCRL6 Missense_Mutation p.T134A 0.11 tolerated(0.07) probably_damaging(0.993) TCGA-BR-6452-01 1 159923879 159923879 C T SLAMF9 Intron 0.14 TCGA-BR-6452-01 1 160001086 160001086 A G PIGM Silent p.S148S 0.06 TCGA-BR-6452-01 1 160187442 160187442 G A DCAF8 Silent p.S732S 0.22 TCGA-BR-6452-01 1 160261161 160261161 T C COPA Silent p.L1137L 0.08 TCGA-BR-6452-01 1 160268779 160268779 T C COPA Silent p.V620V 0.10 TCGA-BR-6452-01 1 160322757 160322757 T C NCSTN Silent p.V359V 0.09 TCGA-BR-6452-01 1 160607140 160607140 C T SLAMF1 Missense_Mutation p.A86T 0.10 tolerated(0.06) benign(0.041) TCGA-BR-6452-01 1 160654897 160654897 T C CD48 Silent p.Q55Q 0.11 TCGA-BR-6452-01 1 160718142 160718142 G T SLAMF7 Missense_Mutation p.V72L 0.09 deleterious(0.01) possibly_damaging(0.761) TCGA-BR-6452-01 1 1607566 1607566 T C SLC35E2B Missense_Mutation p.H132R 0.17 tolerated(0.19) benign(0.182) TCGA-BR-6452-01 1 160850383 160850383 C T ITLN1 Missense_Mutation p.G227D 0.08 tolerated(0.06) probably_damaging(0.954) TCGA-BR-6452-01 1 16095085 16095085 A G FBLIM1 Silent p.P167P 0.12 TCGA-BR-6452-01 1 161009746 161009746 G A USF1 Silent p.H299H 0.14 TCGA-BR-6452-01 1 161039361 161039361 A - ARHGAP30 Frame_Shift_Del p.F18Lfs*20 0.22 TCGA-BR-6452-01 1 161088499 161088502 AAAG - NIT1 Intron 0.29 TCGA-BR-6452-01 1 161179937 161179937 T - NDUFS2 Frame_Shift_Del p.S248Lfs*15 0.11 TCGA-BR-6452-01 1 161201053 161201053 T C NR1I3 Intron 0.17 TCGA-BR-6452-01 1 161201198 161201198 T C NR1I3 Silent p.V205V 0.11 TCGA-BR-6452-01 1 161203072 161203072 C T NR1I3 Missense_Mutation p.A99T 0.11 tolerated(0.2) possibly_damaging(0.597) TCGA-BR-6452-01 1 161284191 161284191 C A SDHC 5'UTR 0.19 TCGA-BR-6452-01 1 161495350 161495350 G A HSPA6 Missense_Mutation p.R301H 0.16 deleterious_low_confidence(0) possibly_damaging(0.874) TCGA-BR-6452-01 1 161495882 161495882 G A HSPA6 Silent p.V478V 0.08 TCGA-BR-6452-01 1 161599765 161599765 T C FCGR3B Missense_Mutation p.D77G 0.11 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 1 161697222 161697222 C T FCRLB Missense_Mutation p.P351S 0.10 deleterious(0.04) benign(0.045) TCGA-BR-6452-01 1 161789480 161789480 T A ATF6 Missense_Mutation p.S323T 0.08 deleterious(0.01) probably_damaging(0.969) TCGA-BR-6452-01 1 161954054 161954054 T A OLFML2B Missense_Mutation p.N555I 0.09 deleterious(0) probably_damaging(0.977) TCGA-BR-6452-01 1 162313640 162313640 A G NOS1AP Missense_Mutation p.I157V 0.11 tolerated(0.3) benign(0.168) TCGA-BR-6452-01 1 162469877 162469877 T C UHMK1 Missense_Mutation p.M134T 0.08 deleterious(0.01) benign(0.001) TCGA-BR-6452-01 1 16258944 16258944 A - SPEN Frame_Shift_Del p.N2072Tfs*14 0.08 TCGA-BR-6452-01 1 162766377 162766377 T G HSD17B7 Missense_Mutation p.F81C 0.09 deleterious(0) probably_damaging(0.928) TCGA-BR-6452-01 1 163117247 163117247 A C RGS5 Missense_Mutation p.V148G 0.10 tolerated(0.36) benign(0.004) TCGA-BR-6452-01 1 16462199 16462199 G - EPHA2 Frame_Shift_Del p.P460Rfs*33 0.19 TCGA-BR-6452-01 1 16474977 16474977 C - EPHA2 Frame_Shift_Del p.G240Vfs*153 0.19 TCGA-BR-6452-01 1 16529008 16529008 T G ARHGEF19 Missense_Mutation p.S657R 0.09 tolerated(0.16) probably_damaging(0.934) TCGA-BR-6452-01 1 166815879 166815880 - A POGK Nonsense_Mutation p.Y55* 0.09 TCGA-BR-6452-01 1 166818552 166818552 G A POGK Missense_Mutation p.A246T 0.12 tolerated(0.36) probably_damaging(0.993) TCGA-BR-6452-01 1 16721643 16721643 C T SZRD1 3'UTR 0.12 TCGA-BR-6452-01 1 167844425 167844425 C A ADCY10 Splice_Site p.X469_splice 0.10 TCGA-BR-6452-01 1 169366587 169366587 T A CCDC181 Nonsense_Mutation p.K419* 0.17 TCGA-BR-6452-01 1 169435124 169435124 T C SLC19A2 Missense_Mutation p.E486G 0.09 deleterious(0.03) benign(0.083) TCGA-BR-6452-01 1 169483457 169483457 C T F5 3'UTR 0.12 TCGA-BR-6452-01 1 169510886 169510886 A T F5 Missense_Mutation p.S1148T 0.07 tolerated_low_confidence(0.28) benign(0.03) TCGA-BR-6452-01 1 169519212 169519212 T G F5 Missense_Mutation p.T480P 0.09 deleterious(0) probably_damaging(0.91) TCGA-BR-6452-01 1 169702011 169702011 T C SELE Missense_Mutation p.I56V 0.10 deleterious(0.03) possibly_damaging(0.884) TCGA-BR-6452-01 1 169822809 169822809 A - C1orf112 3'UTR 0.25 TCGA-BR-6452-01 1 170633330 170633330 G - PRRX1 5'UTR 0.18 TCGA-BR-6452-01 1 171244546 171244546 T C FMO1 Missense_Mutation p.V128A 0.09 deleterious(0.01) possibly_damaging(0.771) TCGA-BR-6452-01 1 171707551 171707551 G A VAMP4 Missense_Mutation p.P2S 0.10 deleterious(0) probably_damaging(0.997) TCGA-BR-6452-01 1 171753267 171753267 G A METTL13 Missense_Mutation p.V181M 0.07 deleterious(0) probably_damaging(0.923) TCGA-BR-6452-01 1 171761377 171761377 T C METTL13 Splice_Site p.X565_splice 0.11 TCGA-BR-6452-01 1 172357785 172357785 C T DNM3 Silent p.G786G 0.11 TCGA-BR-6452-01 1 172411759 172411759 A G PIGC Missense_Mutation p.Y2H 0.06 tolerated_low_confidence(0.18) benign(0.019) TCGA-BR-6452-01 1 17313105 17313105 C A ATP13A2 Silent p.A1086A 0.28 TCGA-BR-6452-01 1 17316648 17316648 A G ATP13A2 Missense_Mutation p.S796P 0.08 tolerated(0.15) benign(0.002) TCGA-BR-6452-01 1 173456932 173456932 T A PRDX6 Missense_Mutation p.F202Y 0.09 tolerated(0.06) benign(0.404) TCGA-BR-6452-01 1 173516834 173516834 T C SLC9C2 Missense_Mutation p.I517M 0.22 tolerated(0.09) benign(0.346) TCGA-BR-6452-01 1 17354302 17354302 T C SDHB Missense_Mutation p.D161G 0.09 deleterious(0.04) benign(0.004) TCGA-BR-6452-01 1 173776460 173776461 - A CENPL Frame_Shift_Ins p.S122Ffs*36 0.11 TCGA-BR-6452-01 1 17410313 17410313 A T PADI2 Missense_Mutation p.F320I 0.07 deleterious(0) probably_damaging(0.99) TCGA-BR-6452-01 1 174221683 174221683 T C RABGAP1L Missense_Mutation p.V314A 0.12 tolerated(0.06) benign(0.285) TCGA-BR-6452-01 1 174417491 174417491 A T GPR52 Missense_Mutation p.Q81L 0.09 deleterious(0.02) probably_damaging(0.988) TCGA-BR-6452-01 1 174671273 174671273 G A RABGAP1L Missense_Mutation p.S683N 0.10 tolerated(0.61) benign(0) TCGA-BR-6452-01 1 174671283 174671283 T C RABGAP1L Silent p.S686S 0.07 TCGA-BR-6452-01 1 175335099 175335099 A T TNR Missense_Mutation p.D743E 0.06 tolerated(0.6) benign(0.001) TCGA-BR-6452-01 1 175372423 175372423 C T TNR Missense_Mutation p.A277T 0.11 tolerated(0.16) benign(0.001) TCGA-BR-6452-01 1 175372644 175372644 T C TNR Missense_Mutation p.Y203C 0.06 tolerated(0.17) benign(0.195) TCGA-BR-6452-01 1 17596816 17596816 G A PADI3 Silent p.E247E 0.09 TCGA-BR-6452-01 1 17609396 17609396 T A PADI3 Missense_Mutation p.I606N 0.17 tolerated(0.07) possibly_damaging(0.629) TCGA-BR-6452-01 1 176525547 176525547 G A PAPPA2 Missense_Mutation p.R30H 0.33 tolerated_low_confidence(0.56) benign(0.001) TCGA-BR-6452-01 1 176679181 176679181 A C PAPPA2 Missense_Mutation p.T1174P 0.11 deleterious(0.01) benign(0.372) TCGA-BR-6452-01 1 176679281 176679281 T A PAPPA2 Missense_Mutation p.V1207D 0.10 tolerated(0.06) possibly_damaging(0.779) TCGA-BR-6452-01 1 176853605 176853605 G A ASTN1 Silent p.H1032H 0.21 TCGA-BR-6452-01 1 17720850 17720850 A G PADI6 RNA 0.17 TCGA-BR-6452-01 1 17747324 17747324 T G RCC2 Missense_Mutation p.I249L 0.13 tolerated(0.07) benign(0.306) TCGA-BR-6452-01 1 17749252 17749252 C T RCC2 Missense_Mutation p.E202K 0.23 tolerated(0.29) benign(0.143) TCGA-BR-6452-01 1 178252710 178252710 C T RASAL2 Missense_Mutation p.P72S 0.11 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-BR-6452-01 1 179363085 179363085 A G AXDND1 Missense_Mutation p.D304G 0.08 deleterious(0.04) probably_damaging(0.945) TCGA-BR-6452-01 1 180000515 180000515 G A CEP350 Missense_Mutation p.R1204H 0.21 benign(0.012) TCGA-BR-6452-01 1 180064877 180064877 G A CEP350 Missense_Mutation p.E2911K 0.10 possibly_damaging(0.611) TCGA-BR-6452-01 1 18021710 18021710 G A ARHGEF10L Missense_Mutation p.G1081D 0.10 deleterious(0) probably_damaging(0.996) TCGA-BR-6452-01 1 180240896 180240896 C T LHX4 Intron 0.18 TCGA-BR-6452-01 1 180243369 180243369 C T LHX4 Silent p.N276N 0.11 TCGA-BR-6452-01 1 180243511 180243511 G A LHX4 Missense_Mutation p.A324T 0.07 tolerated(0.53) benign(0) TCGA-BR-6452-01 1 180399357 180399357 C T ACBD6 Missense_Mutation p.G142D 0.10 deleterious(0.02) possibly_damaging(0.758) TCGA-BR-6452-01 1 180953816 180953816 T A STX6 Missense_Mutation p.S230C 0.11 deleterious(0) probably_damaging(0.984) TCGA-BR-6452-01 1 181022773 181022773 G T MR1 Silent p.L315L 0.09 TCGA-BR-6452-01 1 181059004 181059004 A G IER5 Silent p.T322T 0.19 TCGA-BR-6452-01 1 181764126 181764126 C T CACNA1E Missense_Mutation p.R2052W 0.08 deleterious(0) probably_damaging(0.919) TCGA-BR-6452-01 1 182355457 182355457 A G GLUL Missense_Mutation p.Y137H 0.09 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 1 182550471 182550471 A G RNASEL Silent p.N598N 0.08 TCGA-BR-6452-01 1 182856359 182856359 C T DHX9 Silent p.G1201G 0.07 TCGA-BR-6452-01 1 183086546 183086546 C T LAMC1 Silent p.D552D 0.14 TCGA-BR-6452-01 1 183208692 183208692 T C LAMC2 Silent p.I1021I 0.08 TCGA-BR-6452-01 1 183506324 183506324 A C SMG7 Missense_Mutation p.H403P 0.09 tolerated(0.11) benign(0.003) TCGA-BR-6452-01 1 184663337 184663337 G A EDEM3 Missense_Mutation p.L887F 0.09 tolerated_low_confidence(0.08) benign(0.001) TCGA-BR-6452-01 1 185089303 185089303 A T TRMT1L Missense_Mutation p.F684I 0.10 tolerated(0.25) possibly_damaging(0.838) TCGA-BR-6452-01 1 185267079 185267079 A G IVNS1ABP 3'UTR 0.11 TCGA-BR-6452-01 1 185276772 185276772 G T IVNS1ABP Missense_Mutation p.S127Y 0.14 deleterious(0.01) possibly_damaging(0.608) TCGA-BR-6452-01 1 185970779 185970779 C A HMCN1 Silent p.L1418L 0.11 TCGA-BR-6452-01 1 186055437 186055437 A G HMCN1 Missense_Mutation p.I2982V 0.09 probably_damaging(0.941) TCGA-BR-6452-01 1 186114613 186114613 G A HMCN1 Missense_Mutation p.R4782H 0.15 probably_damaging(0.994) TCGA-BR-6452-01 1 186121905 186121905 A G HMCN1 Missense_Mutation p.I4974V 0.10 benign(0.001) TCGA-BR-6452-01 1 186147639 186147639 A G HMCN1 Silent p.Q5345Q 0.06 TCGA-BR-6452-01 1 186151335 186151335 C T HMCN1 Missense_Mutation p.H5444Y 0.26 possibly_damaging(0.885) TCGA-BR-6452-01 1 186157083 186157083 A C HMCN1 Missense_Mutation p.S5495R 0.07 benign(0.261) TCGA-BR-6452-01 1 186283791 186283791 C T TPR Missense_Mutation p.V2336I 0.22 benign(0.097) TCGA-BR-6452-01 1 186287715 186287715 T C TPR Missense_Mutation p.T2229A 0.13 benign(0.004) TCGA-BR-6452-01 1 186291522 186291522 T G TPR Missense_Mutation p.E2130A 0.09 benign(0.024) TCGA-BR-6452-01 1 186302287 186302287 G A TPR Missense_Mutation p.R1808W 0.10 possibly_damaging(0.689) TCGA-BR-6452-01 1 186304584 186304584 A G TPR Silent p.I1599I 0.06 TCGA-BR-6452-01 1 186315342 186315342 C A TPR Missense_Mutation p.K1007N 0.11 benign(0.403) TCGA-BR-6452-01 1 186919835 186919835 T C PLA2G4A Silent p.S437S 0.09 TCGA-BR-6452-01 1 186957658 186957658 G A PLA2G4A 3'UTR 0.13 TCGA-BR-6452-01 1 190067601 190067601 G A BRINP3 Silent p.N616N 0.06 TCGA-BR-6452-01 1 190129803 190129803 T C BRINP3 Silent p.R393R 0.09 TCGA-BR-6452-01 1 190130020 190130020 T C BRINP3 Missense_Mutation p.D321G 0.28 deleterious(0.05) possibly_damaging(0.612) TCGA-BR-6452-01 1 193094253 193094253 A G CDC73 Missense_Mutation p.E48G 0.11 deleterious(0.01) benign(0.097) TCGA-BR-6452-01 1 19403330 19403330 C T UBR4 Missense_Mutation p.D5131N 0.07 probably_damaging(0.989) TCGA-BR-6452-01 1 19440266 19440266 T C UBR4 Missense_Mutation p.Y3795C 0.08 probably_damaging(0.984) TCGA-BR-6452-01 1 19447850 19447850 C A UBR4 Missense_Mutation p.C3325F 0.18 possibly_damaging(0.714) TCGA-BR-6452-01 1 19467907 19467907 G A UBR4 Missense_Mutation p.P2808S 0.09 probably_damaging(0.998) TCGA-BR-6452-01 1 19653883 19653883 G A PQLC2 Missense_Mutation p.G261S 0.12 deleterious(0.04) probably_damaging(0.978) TCGA-BR-6452-01 1 19655099 19655099 A G PQLC2 Missense_Mutation p.T280A 0.10 tolerated(0.83) benign(0.001) TCGA-BR-6452-01 1 196883700 196883700 T C CFHR4 Missense_Mutation p.L418S 0.07 deleterious(0.01) possibly_damaging(0.587) TCGA-BR-6452-01 1 197071893 197071893 T C ASPM Missense_Mutation p.Y2163C 0.08 deleterious(0) probably_damaging(0.986) TCGA-BR-6452-01 1 197097627 197097627 G A ASPM Missense_Mutation p.R977C 0.21 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 1 197111869 197111869 T C ASPM Missense_Mutation p.T505A 0.06 tolerated(1) benign(0) TCGA-BR-6452-01 1 197889141 197889141 G A LHX9 Missense_Mutation p.A72T 0.08 deleterious(0.02) possibly_damaging(0.833) TCGA-BR-6452-01 1 197889164 197889164 G A LHX9 Silent p.S79S 0.08 TCGA-BR-6452-01 1 198288607 198288607 T G NEK7 Silent p.V288V 0.10 TCGA-BR-6452-01 1 198711080 198711080 A G PTPRC Missense_Mutation p.H829R 0.11 deleterious(0) probably_damaging(0.989) TCGA-BR-6452-01 1 20009620 20009620 G - TMCO4 Frame_Shift_Del p.I607Sfs*74 0.24 TCGA-BR-6452-01 1 200534700 200534700 A - KIF14 Frame_Shift_Del p.F1253Lfs*11 0.16 TCGA-BR-6452-01 1 200558367 200558367 A G KIF14 Missense_Mutation p.M1031T 0.08 deleterious(0) probably_damaging(0.909) TCGA-BR-6452-01 1 200818495 200818495 C - CAMSAP2 Frame_Shift_Del p.S868Qfs*5 0.15 TCGA-BR-6452-01 1 200880842 200880842 C T C1orf106 Silent p.R407R 0.16 TCGA-BR-6452-01 1 200974805 200974805 G T KIF21B Silent p.I155I 0.09 TCGA-BR-6452-01 1 201828050 201828050 A - IPO9 Frame_Shift_Del p.N467Mfs*12 0.14 TCGA-BR-6452-01 1 201843974 201843974 A G IPO9 Missense_Mutation p.M950V 0.10 tolerated(0.28) benign(0.009) TCGA-BR-6452-01 1 202287192 202287192 C G LGR6 Missense_Mutation p.F587L 0.10 tolerated(0.07) possibly_damaging(0.803) TCGA-BR-6452-01 1 202398034 202398034 T C PPP1R12B Silent p.L300L 0.12 TCGA-BR-6452-01 1 202464568 202464568 A T PPP1R12B Missense_Mutation p.T765S 0.08 tolerated(0.74) benign(0.021) TCGA-BR-6452-01 1 202464749 202464749 G A PPP1R12B Missense_Mutation p.R796Q 0.18 deleterious(0) probably_damaging(0.996) TCGA-BR-6452-01 1 202704625 202704625 T - KDM5B Frame_Shift_Del p.S1119Afs*4 0.15 TCGA-BR-6452-01 1 203033065 203033065 G A PPFIA4 Missense_Mutation p.R489H 0.22 deleterious(0) probably_damaging(0.99) TCGA-BR-6452-01 1 203139459 203139459 C T MYBPH Silent p.S351S 0.22 TCGA-BR-6452-01 1 203148504 203148504 C T CHI3L1 3'UTR 0.12 TCGA-BR-6452-01 1 203186215 203186215 T G CHIT1 Missense_Mutation p.K401N 0.07 tolerated(0.36) benign(0.008) TCGA-BR-6452-01 1 203698783 203698783 C T ATP2B4 Intron 0.15 TCGA-BR-6452-01 1 203820223 203820223 T C ZC3H11A Silent p.T715T 0.13 TCGA-BR-6452-01 1 204083710 204083710 C A SOX13 Missense_Mutation p.S132Y 0.12 deleterious(0.01) benign(0.089) TCGA-BR-6452-01 1 204115797 204115797 G A ETNK2 Missense_Mutation p.T205M 0.19 deleterious(0.01) benign(0.149) TCGA-BR-6452-01 1 204216588 204216588 C T PLEKHA6 Missense_Mutation p.A609T 0.34 deleterious(0.01) probably_damaging(0.99) TCGA-BR-6452-01 1 204217956 204217956 G A PLEKHA6 Missense_Mutation p.A606V 0.11 tolerated(0.11) probably_damaging(0.995) TCGA-BR-6452-01 1 204228411 204228411 C - PLEKHA6 Frame_Shift_Del p.V328Yfs*172 0.24 TCGA-BR-6452-01 1 204234146 204234146 C T PLEKHA6 Missense_Mutation p.G102D 0.06 deleterious(0) probably_damaging(0.991) TCGA-BR-6452-01 1 204401362 204401362 C T PIK3C2B Missense_Mutation p.R1374H 0.18 tolerated(0.21) possibly_damaging(0.888) TCGA-BR-6452-01 1 204587072 204587072 A G LRRN2 Silent p.S683S 0.09 TCGA-BR-6452-01 1 204588100 204588100 T C LRRN2 Missense_Mutation p.M341V 0.26 deleterious(0) probably_damaging(0.996) TCGA-BR-6452-01 1 204588840 204588840 T C LRRN2 Missense_Mutation p.N94S 0.11 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 1 204588931 204588931 G A LRRN2 Missense_Mutation p.P64S 0.12 deleterious(0.01) probably_damaging(1) TCGA-BR-6452-01 1 20490512 20490512 C A PLA2G2C Missense_Mutation p.R141M 0.11 deleterious(0.01) possibly_damaging(0.878) TCGA-BR-6452-01 1 204923419 204923419 G A NFASC Missense_Mutation p.G107R 0.19 deleterious(0.02) probably_damaging(1) TCGA-BR-6452-01 1 204924033 204924033 C - NFASC Frame_Shift_Del p.P165Rfs*12 0.21 TCGA-BR-6452-01 1 204926830 204926830 C T NFASC Silent p.N194N 0.15 TCGA-BR-6452-01 1 205033516 205033516 T A CNTN2 Missense_Mutation p.I436N 0.21 deleterious(0) benign(0.367) TCGA-BR-6452-01 1 205241020 205241020 G T TMCC2 Missense_Mutation p.G633V 0.10 deleterious(0) possibly_damaging(0.833) TCGA-BR-6452-01 1 205388445 205388445 G T LEMD1 Missense_Mutation p.Q40K 0.20 deleterious(0.01) benign(0.149) TCGA-BR-6452-01 1 205388453 205388453 T C LEMD1 Missense_Mutation p.K37R 0.10 deleterious(0.01) benign(0.012) TCGA-BR-6452-01 1 205496974 205496974 T C CDK18 Missense_Mutation p.I291T 0.10 deleterious(0) possibly_damaging(0.836) TCGA-BR-6452-01 1 205561362 205561362 G A MFSD4 Missense_Mutation p.S415N 0.35 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 1 205568338 205568338 T C MFSD4 Missense_Mutation p.L483S 0.07 deleterious(0.04) benign(0.014) TCGA-BR-6452-01 1 205689743 205689743 G A NUCKS1 Missense_Mutation p.R90C 0.11 tolerated(0.16) benign(0) TCGA-BR-6452-01 1 206224429 206224429 C T AVPR1B 5'UTR 0.08 TCGA-BR-6452-01 1 206331109 206331109 A G CTSE Missense_Mutation p.D372G 0.08 deleterious(0) probably_damaging(0.992) TCGA-BR-6452-01 1 206664989 206664989 T A IKBKE Missense_Mutation p.F581Y 0.11 deleterious(0) possibly_damaging(0.791) TCGA-BR-6452-01 1 207240883 207240884 - T PFKFB2 Frame_Shift_Ins p.L226Ffs*46 0.12 TCGA-BR-6452-01 1 207753708 207753708 C T CR1 Missense_Mutation p.S1687F 0.10 tolerated(0.09) probably_damaging(0.989) TCGA-BR-6452-01 1 209799327 209799327 T A LAMB3 Nonsense_Mutation p.K548* 0.10 TCGA-BR-6452-01 1 210411419 210411419 C - SERTAD4 Frame_Shift_Del p.P40Qfs*30 0.20 TCGA-BR-6452-01 1 210637971 210637971 A G HHAT Missense_Mutation p.T328A 0.10 tolerated(0.28) benign(0.372) TCGA-BR-6452-01 1 21097562 21097562 C A HP1BP3 Missense_Mutation p.C172F 0.08 deleterious(0.02) benign(0.354) TCGA-BR-6452-01 1 21144005 21144005 A T EIF4G3 Missense_Mutation p.S1415R 0.12 tolerated(0.4) benign(0.304) TCGA-BR-6452-01 1 211451523 211451523 G T RCOR3 Missense_Mutation p.R194M 0.11 deleterious(0) probably_damaging(0.989) TCGA-BR-6452-01 1 211923141 211923141 T - LPGAT1 3'UTR 0.21 TCGA-BR-6452-01 1 21226422 21226422 C A EIF4G3 Missense_Mutation p.E539D 0.08 tolerated_low_confidence(0.19) benign(0.024) TCGA-BR-6452-01 1 212560349 212560349 A G TMEM206 Missense_Mutation p.L137P 0.07 deleterious(0.01) probably_damaging(1) TCGA-BR-6452-01 1 212799538 212799538 G A FAM71A Missense_Mutation p.R440H 0.21 tolerated(0.78) benign(0.001) TCGA-BR-6452-01 1 214557227 214557227 C T PTPN14 Silent p.T657T 0.27 TCGA-BR-6452-01 1 214813868 214813868 T C CENPF Silent p.T729T 0.13 TCGA-BR-6452-01 1 214816273 214816273 T C CENPF Missense_Mutation p.L1531P 0.26 benign(0.021) TCGA-BR-6452-01 1 215342543 215342543 A T KCNK2 Silent p.G159G 0.10 TCGA-BR-6452-01 1 215751371 215751371 T C KCTD3 Missense_Mutation p.L115S 0.09 deleterious(0.03) probably_damaging(0.997) TCGA-BR-6452-01 1 215901647 215901647 T C USH2A Missense_Mutation p.T3931A 0.08 benign(0.002) TCGA-BR-6452-01 1 216371840 216371840 T C USH2A Missense_Mutation p.S1300G 0.11 benign(0.049) TCGA-BR-6452-01 1 218520021 218520021 T - TGFB2 5'UTR 0.32 TCGA-BR-6452-01 1 21887136 21887136 A G ALPL Missense_Mutation p.K27E 0.08 tolerated(1) benign(0.001) TCGA-BR-6452-01 1 21934800 21934800 A G RAP1GAP Missense_Mutation p.L465P 0.08 deleterious(0) probably_damaging(0.979) TCGA-BR-6452-01 1 220100394 220100394 T C SLC30A10 Missense_Mutation p.K232E 0.24 tolerated(0.18) possibly_damaging(0.643) TCGA-BR-6452-01 1 220193341 220193341 T C EPRS Silent p.L446L 0.09 TCGA-BR-6452-01 1 220203728 220203728 C T EPRS Missense_Mutation p.G208D 0.29 deleterious(0) probably_damaging(0.977) TCGA-BR-6452-01 1 220275602 220275602 T C IARS2 Missense_Mutation p.Y228H 0.12 tolerated(0.47) benign(0.097) TCGA-BR-6452-01 1 220315249 220315249 A G IARS2 Missense_Mutation p.H840R 0.08 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 1 220324707 220324707 T C RAB3GAP2 Silent p.T1356T 0.09 TCGA-BR-6452-01 1 220325021 220325021 T C RAB3GAP2 Missense_Mutation p.H1318R 0.13 tolerated(0.19) benign(0.004) TCGA-BR-6452-01 1 221053336 221053336 T C HLX Missense_Mutation p.I46T 0.14 deleterious_low_confidence(0.04) benign(0.138) TCGA-BR-6452-01 1 22150131 22150131 G A HSPG2 Silent p.N4327N 0.26 TCGA-BR-6452-01 1 221879722 221879722 C T DUSP10 Missense_Mutation p.A300T 0.16 tolerated(0.41) benign(0.021) TCGA-BR-6452-01 1 221912385 221912385 T C DUSP10 Missense_Mutation p.I234M 0.07 deleterious(0.03) benign(0.397) TCGA-BR-6452-01 1 223971921 223971921 C A TP53BP2 Nonsense_Mutation p.G1087* 0.10 TCGA-BR-6452-01 1 224340859 224340859 T C FBXO28 Missense_Mutation p.Y178H 0.10 deleterious(0.03) probably_damaging(0.991) TCGA-BR-6452-01 1 224599216 224599216 T C WDR26 Silent p.E357E 0.15 TCGA-BR-6452-01 1 224804931 224804931 G A CNIH3 Missense_Mutation p.A19T 0.08 tolerated(0.44) benign(0.011) TCGA-BR-6452-01 1 225607082 225607084 CTT - LBR In_Frame_Del p.E174del 0.10 TCGA-BR-6452-01 1 226030158 226030158 G T EPHX1 Missense_Mutation p.E341D 0.18 tolerated(0.37) benign(0.02) TCGA-BR-6452-01 1 226550840 226550840 T C PARP1 Silent p.S936S 0.10 TCGA-BR-6452-01 1 226578278 226578278 C T PARP1 Silent p.Q150Q 0.09 TCGA-BR-6452-01 1 227152890 227152890 G A ADCK3 Missense_Mutation p.G123R 0.22 deleterious_low_confidence(0) benign(0.197) TCGA-BR-6452-01 1 227843127 227843127 T C ZNF678 Silent p.L392L 0.19 TCGA-BR-6452-01 1 227935786 227935786 A G SNAP47 Missense_Mutation p.T162A 0.11 tolerated(0.08) benign(0.133) TCGA-BR-6452-01 1 228401963 228401963 C - OBSCN Frame_Shift_Del p.V451Sfs*27 0.08 TCGA-BR-6452-01 1 228431128 228431128 C T OBSCN Silent p.G1150G 0.10 TCGA-BR-6452-01 1 228482590 228482590 G T OBSCN Missense_Mutation p.K4264N 0.09 probably_damaging(0.999) TCGA-BR-6452-01 1 229431635 229431637 CTC - RAB4A In_Frame_Del p.L91del 0.22 TCGA-BR-6452-01 1 22964157 22964157 G A C1QA Silent p.S16S 0.25 TCGA-BR-6452-01 1 229666069 229666069 G A ABCB10 Missense_Mutation p.P508S 0.27 tolerated(0.31) benign(0.005) TCGA-BR-6452-01 1 229683280 229683280 G A ABCB10 Missense_Mutation p.A296V 0.12 deleterious(0) possibly_damaging(0.833) TCGA-BR-6452-01 1 230492723 230492723 T C PGBD5 Missense_Mutation p.T157A 0.09 tolerated(0.52) benign(0.005) TCGA-BR-6452-01 1 230814715 230814715 G T COG2 Missense_Mutation p.Q361H 0.09 deleterious(0) probably_damaging(0.987) TCGA-BR-6452-01 1 230979489 230979489 C A C1orf198 Missense_Mutation p.G180C 0.24 deleterious(0.03) probably_damaging(1) TCGA-BR-6452-01 1 23107938 23107938 C T EPHB2 Missense_Mutation p.A29V 0.17 tolerated(1) benign(0.072) TCGA-BR-6452-01 1 231337179 231337179 T A TRIM67 Missense_Mutation p.S484T 0.24 tolerated(0.44) benign(0.104) TCGA-BR-6452-01 1 231556926 231556926 C T EGLN1 Missense_Mutation p.D237N 0.16 deleterious(0) probably_damaging(0.921) TCGA-BR-6452-01 1 231906664 231906664 G A DISC1 Silent p.E494E 0.15 TCGA-BR-6452-01 1 232539873 232539873 A G SIPA1L2 Missense_Mutation p.L1605P 0.08 tolerated(0.16) possibly_damaging(0.819) TCGA-BR-6452-01 1 232575072 232575072 G - SIPA1L2 Frame_Shift_Del p.C1272Afs*18 0.13 TCGA-BR-6452-01 1 232942991 232942991 A - MAP10 Frame_Shift_Del p.K743Rfs*19 0.20 TCGA-BR-6452-01 1 23405623 23405623 T C KDM1A Missense_Mutation p.W670R 0.09 tolerated(0.13) probably_damaging(1) TCGA-BR-6452-01 1 235377332 235377332 C T ARID4B Silent p.T531T 0.26 TCGA-BR-6452-01 1 235920623 235920623 G A LYST Silent p.L2339L 0.24 TCGA-BR-6452-01 1 235972662 235972663 - T LYST Frame_Shift_Ins p.V486Sfs*20 0.24 TCGA-BR-6452-01 1 236920856 236920856 T C ACTN2 Missense_Mutation p.I742T 0.08 deleterious(0) possibly_damaging(0.549) TCGA-BR-6452-01 1 237001790 237001790 T C MTR Missense_Mutation p.V469A 0.10 deleterious(0.01) probably_damaging(1) TCGA-BR-6452-01 1 237049633 237049633 T C MTR Silent p.G939G 0.11 TCGA-BR-6452-01 1 23758207 23758207 T C ASAP3 Missense_Mutation p.Y843C 0.08 tolerated(0.07) possibly_damaging(0.599) TCGA-BR-6452-01 1 237608788 237608788 C T RYR2 Missense_Mutation p.R420W 0.10 possibly_damaging(0.854) TCGA-BR-6452-01 1 237660039 237660039 T C RYR2 Silent p.L730L 0.07 TCGA-BR-6452-01 1 238048462 238048462 T C ZP4 Intron 0.11 TCGA-BR-6452-01 1 238090431 238090431 A G RP11-193H5.1 RNA 0.17 TCGA-BR-6452-01 1 23842920 23842920 G A E2F2 Missense_Mutation p.L318F 0.11 tolerated(0.75) benign(0.002) TCGA-BR-6452-01 1 240256747 240256747 G A FMN2 Silent p.R446R 0.08 TCGA-BR-6452-01 1 240497204 240497204 T C FMN2 Silent p.L1534L 0.18 TCGA-BR-6452-01 1 240656448 240656448 C T GREM2 Missense_Mutation p.V110M 0.29 tolerated(0.29) benign(0.148) TCGA-BR-6452-01 1 24078489 24078489 C T TCEB3 Missense_Mutation p.P491L 0.21 tolerated(0.12) benign(0.017) TCGA-BR-6452-01 1 24080852 24080852 G T TCEB3 Splice_Site p.X591_splice 0.07 TCGA-BR-6452-01 1 24113772 24113772 G A PITHD1 Missense_Mutation p.R181Q 0.21 tolerated(0.09) benign(0.07) TCGA-BR-6452-01 1 241798852 241798852 T A CHML Missense_Mutation p.T73S 0.07 tolerated(0.75) benign(0.029) TCGA-BR-6452-01 1 242020693 242020693 C T EXO1 Missense_Mutation p.A151V 0.07 deleterious(0) probably_damaging(0.996) TCGA-BR-6452-01 1 242052913 242052913 C T EXO1 3'UTR 0.10 TCGA-BR-6452-01 1 242253053 242253053 T G PLD5 3'UTR 0.09 TCGA-BR-6452-01 1 243328300 243328300 T - CEP170 Frame_Shift_Del p.M988Wfs*28 0.14 TCGA-BR-6452-01 1 243727145 243727145 C T AKT3 Silent p.E275E 0.13 TCGA-BR-6452-01 1 244217659 244217659 C T ZBTB18 Nonsense_Mutation p.R195* 0.11 TCGA-BR-6452-01 1 244217906 244217906 A T ZBTB18 Missense_Mutation p.N277I 0.10 tolerated(0.12) benign(0.033) TCGA-BR-6452-01 1 24432516 24432516 G A MYOM3 Missense_Mutation p.R152C 0.21 deleterious(0) probably_damaging(0.993) TCGA-BR-6452-01 1 2447082 2447082 G A PANK4 Silent p.Y431Y 0.18 TCGA-BR-6452-01 1 245017773 245017773 A G HNRNPU Silent p.H819H 0.17 TCGA-BR-6452-01 1 245765975 245765975 T C KIF26B Silent p.L483L 0.08 TCGA-BR-6452-01 1 245770996 245770996 T C KIF26B Missense_Mutation p.V534A 0.11 deleterious(0) unknown(0) TCGA-BR-6452-01 1 245849553 245849553 A G KIF26B Missense_Mutation p.K1090E 0.13 deleterious(0.01) unknown(0) TCGA-BR-6452-01 1 245850411 245850411 G A KIF26B Missense_Mutation p.A1376T 0.17 tolerated(0.29) unknown(0) TCGA-BR-6452-01 1 246027162 246027162 C T SMYD3 Silent p.E280E 0.18 TCGA-BR-6452-01 1 246078843 246078843 T C SMYD3 Missense_Mutation p.T268A 0.08 tolerated(0.32) benign(0.01) TCGA-BR-6452-01 1 24673056 24673056 C T GRHL3 Missense_Mutation p.R490C 0.28 deleterious(0) probably_damaging(0.911) TCGA-BR-6452-01 1 246795222 246795222 G T CNST Missense_Mutation p.E204D 0.08 deleterious(0.01) probably_damaging(0.987) TCGA-BR-6452-01 1 247061597 247061600 TTCA - AHCTF1 Frame_Shift_Del p.E521Sfs*11 0.19 TCGA-BR-6452-01 1 247071023 247071023 T C AHCTF1 Silent p.P207P 0.07 TCGA-BR-6452-01 1 247875672 247875672 G A OR6F1 Missense_Mutation p.P129L 0.11 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 1 247920971 247920971 T C OR1C1 Silent p.S246S 0.13 TCGA-BR-6452-01 1 247978673 247978673 C T OR14A16 Missense_Mutation p.R120H 0.18 deleterious(0.01) benign(0.273) TCGA-BR-6452-01 1 248004583 248004583 C T OR11L1 Missense_Mutation p.V206M 0.13 deleterious(0.01) benign(0.427) TCGA-BR-6452-01 1 248525680 248525681 - A OR2T4 Frame_Shift_Ins p.A269Gfs*33 0.19 TCGA-BR-6452-01 1 248551708 248551708 A G OR2T6 Missense_Mutation p.T267A 0.10 tolerated(0.06) possibly_damaging(0.588) TCGA-BR-6452-01 1 248616313 248616313 C A OR2T2 Missense_Mutation p.T72N 0.08 deleterious(0) possibly_damaging(0.881) TCGA-BR-6452-01 1 248685734 248685734 G A OR2G6 Missense_Mutation p.A263T 0.18 tolerated(0.2) benign(0.213) TCGA-BR-6452-01 1 248844710 248844710 A G OR14I1 Missense_Mutation p.M299T 0.11 deleterious(0) benign(0.01) TCGA-BR-6452-01 1 24977948 24977949 GA - SRRM1 Frame_Shift_Del p.R193Kfs*49 0.19 TCGA-BR-6452-01 1 26189996 26189996 A C PAQR7 Missense_Mutation p.L112R 0.10 deleterious(0) probably_damaging(0.918) TCGA-BR-6452-01 1 26663751 26663751 A T AIM1L Missense_Mutation p.I381N 0.08 deleterious(0) probably_damaging(0.993) TCGA-BR-6452-01 1 26878189 26878189 A T RPS6KA1 Missense_Mutation p.D157V 0.19 deleterious(0) probably_damaging(0.992) TCGA-BR-6452-01 1 27088788 27088788 G - ARID1A Frame_Shift_Del p.G801Vfs*32 0.11 TCGA-BR-6452-01 1 27105591 27105591 T C ARID1A Silent p.Y1734Y 0.08 TCGA-BR-6452-01 1 27105931 27105931 G - ARID1A Frame_Shift_Del p.D1850Tfs*33 0.44 TCGA-BR-6452-01 1 27176863 27176863 T C ZDHHC18 Missense_Mutation p.F240L 0.11 deleterious(0) probably_damaging(0.995) TCGA-BR-6452-01 1 27436202 27436202 C T SLC9A1 Missense_Mutation p.G294S 0.19 deleterious(0.04) probably_damaging(0.985) TCGA-BR-6452-01 1 27876869 27876869 T - AHDC1 Frame_Shift_Del p.K586Nfs*37 0.27 TCGA-BR-6452-01 1 28607245 28607245 C T SESN2 Missense_Mutation p.L459F 0.15 deleterious(0) probably_damaging(0.951) TCGA-BR-6452-01 1 28802790 28802790 T C PHACTR4 Silent p.D541D 0.16 TCGA-BR-6452-01 1 28819589 28819589 C T PHACTR4 Silent p.S703S 0.09 TCGA-BR-6452-01 1 28819605 28819605 T G PHACTR4 Splice_Site p.X708_splice 0.09 TCGA-BR-6452-01 1 29189408 29189408 C T OPRD1 Silent p.R244R 0.14 TCGA-BR-6452-01 1 29522739 29522739 T C MECR Missense_Mutation p.M288V 0.10 deleterious(0.01) benign(0.206) TCGA-BR-6452-01 1 29611288 29611288 C A PTPRU Nonsense_Mutation p.S742* 0.16 TCGA-BR-6452-01 1 29618439 29618439 A T PTPRU Missense_Mutation p.M803L 0.11 tolerated(0.15) benign(0.001) TCGA-BR-6452-01 1 31426582 31426583 - A PUM1 Frame_Shift_Ins p.S857Ffs*21 0.11 TCGA-BR-6452-01 1 31479866 31479866 C T PUM1 Nonsense_Mutation p.W172* 0.05 TCGA-BR-6452-01 1 31907103 31907103 G A SERINC2 3'UTR 0.14 TCGA-BR-6452-01 1 32222059 32222059 G A BAI2 Missense_Mutation p.R127W 0.15 tolerated(0.15) possibly_damaging(0.895) TCGA-BR-6452-01 1 32503449 32503449 G T KHDRBS1 Nonsense_Mutation p.G307* 0.11 TCGA-BR-6452-01 1 32635510 32635510 A G KPNA6 Silent p.K424K 0.10 TCGA-BR-6452-01 1 32696575 32696575 A G EIF3I Missense_Mutation p.H284R 0.09 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 1 32829415 32829415 T C TSSK3 Missense_Mutation p.I122T 0.24 deleterious(0.03) probably_damaging(0.995) TCGA-BR-6452-01 1 33134616 33134616 A G RBBP4 Missense_Mutation p.K215R 0.13 tolerated(0.46) benign(0.001) TCGA-BR-6452-01 1 33237888 33237888 C A KIAA1522 Silent p.P1036P 0.14 TCGA-BR-6452-01 1 3394499 3394499 G A ARHGEF16 Missense_Mutation p.E512K 0.09 deleterious(0) probably_damaging(0.997) TCGA-BR-6452-01 1 3395096 3395096 C T ARHGEF16 Silent p.S578S 0.10 TCGA-BR-6452-01 1 34015866 34015866 C T CSMD2 Missense_Mutation p.S2799N 0.14 tolerated(0.23) probably_damaging(0.983) TCGA-BR-6452-01 1 34035106 34035106 G A CSMD2 Missense_Mutation p.R2669C 0.20 deleterious(0) probably_damaging(0.932) TCGA-BR-6452-01 1 3417801 3417801 C T MEGF6 Missense_Mutation p.D796N 0.13 tolerated(0.61) benign(0.028) TCGA-BR-6452-01 1 34667751 34667751 A G C1orf94 Missense_Mutation p.H446R 0.09 tolerated(1) benign(0.001) TCGA-BR-6452-01 1 34684448 34684448 A G C1orf94 3'UTR 0.33 TCGA-BR-6452-01 1 35250919 35250919 A G GJB3 Missense_Mutation p.I186V 0.12 tolerated(0.55) benign(0.006) TCGA-BR-6452-01 1 35260727 35260727 C - GJA4 Frame_Shift_Del p.P306Lfs*102 0.28 TCGA-BR-6452-01 1 35332721 35332721 G A DLGAP3 Silent p.I883I 0.23 TCGA-BR-6452-01 1 35370394 35370394 C T DLGAP3 Silent p.G197G 0.24 TCGA-BR-6452-01 1 36203686 36203686 T C CLSPN Missense_Mutation p.K1191E 0.11 tolerated(0.15) benign(0.257) TCGA-BR-6452-01 1 36563431 36563431 G A COL8A2 Silent p.G617G 0.16 TCGA-BR-6452-01 1 36645561 36645561 G A MAP7D1 Missense_Mutation p.G803E 0.10 unknown(0) TCGA-BR-6452-01 1 36755361 36755361 G A THRAP3 Missense_Mutation p.A581T 0.28 tolerated(0.18) probably_damaging(0.982) TCGA-BR-6452-01 1 36769439 36769439 C T THRAP3 Missense_Mutation p.R897W 0.10 deleterious(0) probably_damaging(0.988) TCGA-BR-6452-01 1 36785374 36785374 C T SH3D21 Silent p.N370N 0.15 TCGA-BR-6452-01 1 37975066 37975066 G A MEAF6 Missense_Mutation p.T95I 0.10 deleterious(0) probably_damaging(0.994) TCGA-BR-6452-01 1 38006093 38006093 A G SNIP1 Silent p.G197G 0.07 TCGA-BR-6452-01 1 38023220 38023220 T C DNALI1 Missense_Mutation p.V55A 0.08 tolerated(0.81) benign(0.001) TCGA-BR-6452-01 1 38048476 38048476 C T GNL2 Missense_Mutation p.R233H 0.08 deleterious(0) probably_damaging(0.996) TCGA-BR-6452-01 1 38053053 38053053 G A GNL2 Missense_Mutation p.T143I 0.20 deleterious(0.01) possibly_damaging(0.745) TCGA-BR-6452-01 1 38226949 38226949 C T EPHA10 Intron 0.29 TCGA-BR-6452-01 1 38265387 38265387 C T MANEAL Missense_Mutation p.P296S 0.15 tolerated(0.07) benign(0.019) TCGA-BR-6452-01 1 38463130 38463130 C T FHL3 Missense_Mutation p.V264I 0.20 tolerated(0.48) benign(0.003) TCGA-BR-6452-01 1 39341489 39341489 G A GJA9 Silent p.G94G 0.08 TCGA-BR-6452-01 1 39765892 39765892 A T MACF1 Missense_Mutation p.E836V 0.09 benign(0.204) TCGA-BR-6452-01 1 39796951 39796951 G A MACF1 Intron 0.09 TCGA-BR-6452-01 1 39844182 39844182 C T MACF1 Silent p.Y2359Y 0.15 TCGA-BR-6452-01 1 39854290 39854290 C T MACF1 Missense_Mutation p.T3197I 0.08 possibly_damaging(0.795) TCGA-BR-6452-01 1 39879803 39879803 A G KIAA0754 Missense_Mutation p.N1153S 0.25 benign(0.065) TCGA-BR-6452-01 1 40226088 40226088 G A BMP8B 3'UTR 0.12 TCGA-BR-6452-01 1 40363565 40363565 G A MYCL Nonsense_Mutation p.R222* 0.10 TCGA-BR-6452-01 1 40535427 40535427 C A CAP1 Missense_Mutation p.P292T 0.11 tolerated(0.07) possibly_damaging(0.788) TCGA-BR-6452-01 1 40703531 40703531 A C RLF Silent p.R1053R 0.10 TCGA-BR-6452-01 1 40747087 40747087 A T ZMPSTE24 Missense_Mutation p.D281V 0.12 deleterious(0) probably_damaging(0.986) TCGA-BR-6452-01 1 40879909 40879909 C A SMAP2 Missense_Mutation p.L190I 0.10 deleterious(0) probably_damaging(0.978) TCGA-BR-6452-01 1 40881883 40881883 C T SMAP2 Silent p.G239G 0.13 TCGA-BR-6452-01 1 40981037 40981037 T C EXO5 Missense_Mutation p.L274P 0.10 deleterious(0.01) probably_damaging(0.996) TCGA-BR-6452-01 1 41250028 41250028 A G KCNQ4 Missense_Mutation p.Y88C 0.17 deleterious(0) possibly_damaging(0.87) TCGA-BR-6452-01 1 41990484 41990484 G A HIVEP3 Silent p.L1769L 0.17 TCGA-BR-6452-01 1 42046233 42046233 T C HIVEP3 Silent p.S1412S 0.09 TCGA-BR-6452-01 1 42046988 42046988 C A HIVEP3 Nonsense_Mutation p.E1161* 0.09 TCGA-BR-6452-01 1 42048796 42048796 C T HIVEP3 Missense_Mutation p.R558Q 0.27 probably_damaging(0.996) TCGA-BR-6452-01 1 43125024 43125024 T C PPIH Intron 0.11 TCGA-BR-6452-01 1 43212614 43212614 T C LEPRE1 Missense_Mutation p.N795S 0.09 tolerated_low_confidence(0.17) possibly_damaging(0.486) TCGA-BR-6452-01 1 43213016 43213016 A G LEPRE1 Missense_Mutation p.V661A 0.08 deleterious(0) possibly_damaging(0.885) TCGA-BR-6452-01 1 43396858 43396858 T C SLC2A1 Missense_Mutation p.N45S 0.09 tolerated(0.12) possibly_damaging(0.892) TCGA-BR-6452-01 1 43738912 43738912 C T TMEM125 Silent p.S173S 0.17 TCGA-BR-6452-01 1 43777979 43777979 C A TIE1 Missense_Mutation p.P545H 0.09 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 1 43903371 43903371 G A SZT2 Silent p.S2075S 0.17 TCGA-BR-6452-01 1 43908489 43908489 G T SZT2 Splice_Site p.X2661_splice 0.12 TCGA-BR-6452-01 1 44056913 44056913 G A PTPRF Missense_Mutation p.R407H 0.28 deleterious(0.01) benign(0.028) TCGA-BR-6452-01 1 44063488 44063488 T C PTPRF Missense_Mutation p.V628A 0.15 tolerated(0.7) benign(0.297) TCGA-BR-6452-01 1 44075099 44075099 A T PTPRF Silent p.G1301G 0.11 TCGA-BR-6452-01 1 44442793 44442793 G A ATP6V0B Missense_Mutation p.D166N 0.21 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 1 44458260 44458260 G T CCDC24 Missense_Mutation p.R123M 0.10 deleterious(0) possibly_damaging(0.785) TCGA-BR-6452-01 1 44461664 44461664 C T CCDC24 Silent p.C252C 0.10 TCGA-BR-6452-01 1 44680589 44680589 G A DMAP1 Intron 0.33 TCGA-BR-6452-01 1 45111159 45111162 AAGT - RNF220 Splice_Site p.X482_splice 0.31 TCGA-BR-6452-01 1 45474846 45474846 T A HECTD3 Missense_Mutation p.I348F 0.17 tolerated(0.11) benign(0.178) TCGA-BR-6452-01 1 45479751 45479751 T C UROD Intron 0.15 TCGA-BR-6452-01 1 45799172 45799172 G A MUTYH Silent p.F84F 0.08 TCGA-BR-6452-01 1 45808899 45808899 C A TOE1 Missense_Mutation p.P353Q 0.09 tolerated(0.24) benign(0.08) TCGA-BR-6452-01 1 46496749 46496749 C T MAST2 Nonsense_Mutation p.R927* 0.11 TCGA-BR-6452-01 1 46497992 46497992 T G MAST2 Silent p.A1110A 0.11 TCGA-BR-6452-01 1 46658844 46658844 A G POMGNT1 Splice_Site p.X384_splice 0.20 TCGA-BR-6452-01 1 46739122 46739122 G A RAD54L Missense_Mutation p.E491K 0.22 tolerated(0.87) benign(0.002) TCGA-BR-6452-01 1 46876500 46876500 A G FAAH Silent p.S430S 0.09 TCGA-BR-6452-01 1 47101525 47101525 T A ATPAF1 Missense_Mutation p.M327L 0.08 deleterious(0) possibly_damaging(0.545) TCGA-BR-6452-01 1 47123837 47123837 C T ATPAF1 Missense_Mutation p.E174K 0.15 deleterious(0.02) possibly_damaging(0.878) TCGA-BR-6452-01 1 47515714 47515714 A G CYP4X1 Silent p.V466V 0.08 TCGA-BR-6452-01 1 47564911 47564911 G A CYP4Z1 Missense_Mutation p.R341Q 0.10 deleterious(0.05) possibly_damaging(0.857) TCGA-BR-6452-01 1 47716886 47716886 T C STIL Silent p.L1263L 0.11 TCGA-BR-6452-01 1 47840875 47840875 G A CMPK1 Silent p.Q185Q 0.10 TCGA-BR-6452-01 1 48703476 48703476 C A SLC5A9 Missense_Mutation p.A498D 0.16 deleterious(0) probably_damaging(0.955) TCGA-BR-6452-01 1 52343945 52343945 A G NRD1 Splice_Site p.X114_splice 0.12 TCGA-BR-6452-01 1 52838930 52838930 T C ORC1 Missense_Mutation p.S837G 0.09 tolerated(0.11) benign(0.07) TCGA-BR-6452-01 1 52881054 52881054 G A PRPF38A Missense_Mutation p.E298K 0.18 deleterious_low_confidence(0.04) unknown(0) TCGA-BR-6452-01 1 53072522 53072522 G A GPX7 Missense_Mutation p.S102N 0.11 tolerated(0.22) benign(0.006) TCGA-BR-6452-01 1 53236726 53236726 G A ZYG11B Silent p.R77R 0.08 TCGA-BR-6452-01 1 53245640 53245640 A G ZYG11B Missense_Mutation p.E356G 0.07 deleterious(0.02) benign(0.059) TCGA-BR-6452-01 1 53279576 53279576 A G ZYG11B Silent p.V646V 0.13 TCGA-BR-6452-01 1 53675839 53675839 A T CPT2 Missense_Mutation p.T165S 0.12 tolerated(0.99) benign(0.091) TCGA-BR-6452-01 1 53715086 53715086 T C LRP8 Missense_Mutation p.N940S 0.09 deleterious_low_confidence(0.04) benign(0.387) TCGA-BR-6452-01 1 54060231 54060232 - C GLIS1 Frame_Shift_Ins p.S117Ffs*15 0.10 TCGA-BR-6452-01 1 54331937 54331937 C T YIPF1 Missense_Mutation p.R256H 0.18 tolerated(0.5) probably_damaging(0.973) TCGA-BR-6452-01 1 54387395 54387395 C T HSPB11 Missense_Mutation p.A122T 0.13 deleterious(0) probably_damaging(0.928) TCGA-BR-6452-01 1 54395786 54395786 A G HSPB11 Missense_Mutation p.M44T 0.07 deleterious(0) possibly_damaging(0.829) TCGA-BR-6452-01 1 54692744 54692744 A G SSBP3 3'UTR 0.07 TCGA-BR-6452-01 1 55074766 55074766 C A ACOT11 Intron 0.07 TCGA-BR-6452-01 1 57159508 57159508 T C PRKAA2 Silent p.P182P 0.09 TCGA-BR-6452-01 1 57257958 57257958 C - C1orf168 Frame_Shift_Del p.T178Lfs*39 0.11 TCGA-BR-6452-01 1 57535065 57535065 G A DAB1 Missense_Mutation p.R211C 0.20 deleterious(0.02) possibly_damaging(0.899) TCGA-BR-6452-01 1 59134671 59134671 A - MYSM1 Frame_Shift_Del p.F567Lfs*11 0.15 TCGA-BR-6452-01 1 59248625 59248625 G T JUN Missense_Mutation p.L40M 0.06 deleterious(0.02) probably_damaging(0.995) TCGA-BR-6452-01 1 59812017 59812017 G - FGGY Frame_Shift_Del p.V140* 0.32 TCGA-BR-6452-01 1 60299106 60299106 T C HOOK1 Silent p.L101L 0.10 TCGA-BR-6452-01 1 60330855 60330855 A G HOOK1 Missense_Mutation p.H561R 0.24 tolerated(0.11) benign(0.403) TCGA-BR-6452-01 1 6172337 6172337 T A CHD5 Missense_Mutation p.D1668V 0.24 tolerated_low_confidence(0.07) benign(0.006) TCGA-BR-6452-01 1 6202212 6202212 A G CHD5 Silent p.S804S 0.19 TCGA-BR-6452-01 1 62614010 62614010 A G INADL Missense_Mutation p.T1776A 0.08 tolerated_low_confidence(0.92) benign(0.001) TCGA-BR-6452-01 1 62675548 62675548 C T L1TD1 Missense_Mutation p.P368S 0.06 tolerated(0.07) unknown(0) TCGA-BR-6452-01 1 62675858 62675858 A T L1TD1 Missense_Mutation p.D471V 0.12 tolerated(0.07) benign(0.093) TCGA-BR-6452-01 1 63090947 63090947 T A DOCK7 Missense_Mutation p.T470S 0.08 tolerated(0.9) benign(0.024) TCGA-BR-6452-01 1 6314057 6314057 G A GPR153 Silent p.G169G 0.12 TCGA-BR-6452-01 1 63919586 63919586 T C ITGB3BP Intron 0.10 TCGA-BR-6452-01 1 64644121 64644121 G T ROR1 Missense_Mutation p.Q799H 0.21 tolerated(0.2) probably_damaging(0.91) TCGA-BR-6452-01 1 6521665 6521665 G T TNFRSF25 Silent p.I370I 0.13 TCGA-BR-6452-01 1 65332662 65332662 T A JAK1 Missense_Mutation p.I293F 0.09 deleterious(0.01) possibly_damaging(0.704) TCGA-BR-6452-01 1 65878634 65878634 G A DNAJC6 Missense_Mutation p.A947T 0.08 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 1 66102560 66102560 C A LEPR Nonsense_Mutation p.C1120* 0.22 TCGA-BR-6452-01 1 6649079 6649079 T C ZBTB48 Missense_Mutation p.V625A 0.22 tolerated_low_confidence(0.29) benign(0.002) TCGA-BR-6452-01 1 6694165 6694165 C A THAP3 3'Flank 0.25 TCGA-BR-6452-01 1 6712987 6712987 C T DNAJC11 Missense_Mutation p.A178T 0.10 deleterious(0.04) possibly_damaging(0.521) TCGA-BR-6452-01 1 67263688 67263688 C T INSL5 3'UTR 0.19 TCGA-BR-6452-01 1 67356835 67356835 A G WDR78 Splice_Site p.X215_splice 0.09 TCGA-BR-6452-01 1 67411924 67411924 A G MIER1 Silent p.E95E 0.08 TCGA-BR-6452-01 1 67512970 67512970 A G SLC35D1 Missense_Mutation p.V205A 0.08 deleterious(0.03) benign(0.345) TCGA-BR-6452-01 1 67721560 67721560 T C IL23R Missense_Mutation p.Y397H 0.11 tolerated(1) benign(0.001) TCGA-BR-6452-01 1 68171151 68171151 T - GNG12 Frame_Shift_Del p.T68Lfs*22 0.28 TCGA-BR-6452-01 1 70226075 70226075 A G LRRC7 Missense_Mutation p.K63R 0.15 tolerated(0.09) benign(0.219) TCGA-BR-6452-01 1 70504911 70504911 C T LRRC7 Missense_Mutation p.A1097V 0.08 tolerated(0.08) benign(0.001) TCGA-BR-6452-01 1 74507219 74507220 - T LRRIQ3 Frame_Shift_Ins p.Y466Ifs*8 0.12 TCGA-BR-6452-01 1 74737329 74737329 A G FPGT-TNNI3K Missense_Mutation p.I241M 0.12 deleterious(0.01) possibly_damaging(0.573) TCGA-BR-6452-01 1 75036811 75036811 A G C1orf173 Missense_Mutation p.V1528A 0.11 tolerated_low_confidence(0.38) benign(0.001) TCGA-BR-6452-01 1 75072508 75072508 C A C1orf173 Missense_Mutation p.E422D 0.08 deleterious(0.02) probably_damaging(0.987) TCGA-BR-6452-01 1 76387916 76387916 T - ASB17 Frame_Shift_Del p.N177Tfs*7 0.18 TCGA-BR-6452-01 1 7797373 7797373 G A CAMTA1 Missense_Mutation p.R1134H 0.28 tolerated(0.23) benign(0.011) TCGA-BR-6452-01 1 7798045 7798045 T G CAMTA1 Missense_Mutation p.S1229A 0.08 tolerated_low_confidence(0.05) benign(0.01) TCGA-BR-6452-01 1 78047779 78047779 A G ZZZ3 Silent p.V559V 0.09 TCGA-BR-6452-01 1 78162897 78162897 A - USP33 3'UTR 0.23 TCGA-BR-6452-01 1 78207399 78207399 T C USP33 Missense_Mutation p.E26G 0.09 deleterious_low_confidence(0.01) benign(0.129) TCGA-BR-6452-01 1 78425903 78425903 A T FUBP1 Nonsense_Mutation p.Y514* 0.09 TCGA-BR-6452-01 1 78429943 78429943 C T FUBP1 Silent p.K312K 0.08 TCGA-BR-6452-01 1 7887864 7887864 C T PER3 Nonsense_Mutation p.Q951* 0.12 TCGA-BR-6452-01 1 79101047 79101048 - A IFI44L Frame_Shift_Ins p.N252Kfs*11 0.18 TCGA-BR-6452-01 1 8073426 8073426 A - ERRFI1 Frame_Shift_Del p.F411Lfs*41 0.22 TCGA-BR-6452-01 1 82432273 82432273 T C LPHN2 Missense_Mutation p.F760L 0.09 tolerated(0.09) probably_damaging(0.995) TCGA-BR-6452-01 1 82436047 82436047 C T LPHN2 Missense_Mutation p.A911V 0.07 tolerated(0.17) benign(0.287) TCGA-BR-6452-01 1 82447656 82447656 A G LPHN2 Missense_Mutation p.K1076R 0.13 tolerated(0.15) probably_damaging(0.998) TCGA-BR-6452-01 1 82452676 82452676 A G LPHN2 Intron 0.10 TCGA-BR-6452-01 1 82456638 82456638 T C LPHN2 Missense_Mutation p.S1341P 0.11 tolerated_low_confidence(0.15) possibly_damaging(0.84) TCGA-BR-6452-01 1 8418702 8418702 G A RERE Missense_Mutation p.T1298I 0.09 unknown(0) TCGA-BR-6452-01 1 84394887 84394887 A G TTLL7 Silent p.T358T 0.09 TCGA-BR-6452-01 1 84403686 84403686 A G TTLL7 Missense_Mutation p.M246T 0.09 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 1 84417647 84417647 G A TTLL7 Missense_Mutation p.P13L 0.11 deleterious_low_confidence(0.05) benign(0.038) TCGA-BR-6452-01 1 84864327 84864327 C T DNASE2B Missense_Mutation p.A27V 0.20 tolerated(0.11) benign(0.197) TCGA-BR-6452-01 1 85020568 85020568 T - CTBS 3'UTR 0.65 TCGA-BR-6452-01 1 85128059 85128059 C T SSX2IP Splice_Site p.X250_splice 0.11 TCGA-BR-6452-01 1 8568729 8568729 A G RERE Missense_Mutation p.L279P 0.14 probably_damaging(0.999) TCGA-BR-6452-01 1 87026013 87026013 A - CLCA4 Frame_Shift_Del p.K142Nfs*96 0.21 TCGA-BR-6452-01 1 879321 879321 G A SAMD11 Missense_Mutation p.A612T 0.13 tolerated(0.23) possibly_damaging(0.573) TCGA-BR-6452-01 1 89226053 89226053 T C PKN2 Silent p.S166S 0.12 TCGA-BR-6452-01 1 89521797 89521797 C T GBP1 Missense_Mutation p.A424T 0.06 tolerated(0.08) benign(0.016) TCGA-BR-6452-01 1 89523757 89523757 T C GBP1 Silent p.Q264Q 0.22 TCGA-BR-6452-01 1 90400154 90400154 T C LRRC8D Silent p.I509I 0.18 TCGA-BR-6452-01 1 91779569 91779569 C T HFM1 Silent p.V1063V 0.07 TCGA-BR-6452-01 1 91816380 91816380 A G HFM1 Silent p.H707H 0.14 TCGA-BR-6452-01 1 9188749 9188749 C T GPR157 Missense_Mutation p.R113H 0.20 tolerated(0.15) benign(0.007) TCGA-BR-6452-01 1 91973481 91973482 - A CDC7 Frame_Shift_Ins p.I64Nfs*21 0.11 TCGA-BR-6452-01 1 92428390 92428390 C T BRDT Nonsense_Mutation p.R27* 0.08 TCGA-BR-6452-01 1 92433761 92433761 T C BRDT Missense_Mutation p.L130S 0.08 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 1 92528895 92528895 T A EPHX4 3'UTR 0.27 TCGA-BR-6452-01 1 93720123 93720124 - A CCDC18 Frame_Shift_Ins p.E1154Rfs*3 0.12 TCGA-BR-6452-01 1 94033334 94033334 C T BCAR3 Silent p.Q683Q 0.10 TCGA-BR-6452-01 1 94054955 94054955 G A BCAR3 Nonsense_Mutation p.R170* 0.18 TCGA-BR-6452-01 1 94338708 94338708 A G DNTTIP2 Silent p.S623S 0.10 TCGA-BR-6452-01 1 94476478 94476478 C T ABCA4 Silent p.E1864E 0.14 TCGA-BR-6452-01 1 94544162 94544162 T C ABCA4 Missense_Mutation p.Q447R 0.06 deleterious(0) benign(0.24) TCGA-BR-6452-01 1 94955477 94955477 T G ABCD3 Missense_Mutation p.V423G 0.19 tolerated(0.38) benign(0) TCGA-BR-6452-01 1 95357932 95357932 T - SLC44A3 Frame_Shift_Del p.F574Lfs*4 0.11 TCGA-BR-6452-01 1 97839124 97839124 C T DPYD Missense_Mutation p.C684Y 0.08 deleterious(0) probably_damaging(0.998) TCGA-BR-6452-01 1 987126 987126 C T AGRN Missense_Mutation p.A1861V 0.11 deleterious(0.05) benign(0.004) TCGA-BR-6452-01 1 9910819 9910819 A G CTNNBIP1 Missense_Mutation p.V68A 0.06 deleterious(0) benign(0.132) TCGA-BR-6452-01 20 10019012 10019012 G A ANKEF1 Silent p.R21R 0.09 TCGA-BR-6452-01 20 10393240 10393240 T C MKKS Missense_Mutation p.H308R 0.08 tolerated(0.23) benign(0.02) TCGA-BR-6452-01 20 10541418 10541418 A G SLX4IP Missense_Mutation p.H63R 0.11 tolerated(1) benign(0.036) TCGA-BR-6452-01 20 13763492 13763493 TT - ESF1 Frame_Shift_Del p.K98Nfs*4 0.14 TCGA-BR-6452-01 20 14306924 14306925 - T FLRT3 Frame_Shift_Ins p.T410Nfs*12 0.08 TCGA-BR-6452-01 20 14306975 14306975 T - FLRT3 Frame_Shift_Del p.N393Tfs*23 0.09 TCGA-BR-6452-01 20 16729574 16729574 G A OTOR Missense_Mutation p.V60I 0.22 tolerated(1) benign(0.004) TCGA-BR-6452-01 20 17930823 17930823 T C SNX5 Silent p.A248A 0.08 TCGA-BR-6452-01 20 17970645 17970645 G A MGME1 Missense_Mutation p.D310N 0.08 tolerated(0.23) benign(0.094) TCGA-BR-6452-01 20 18005394 18005394 C T OVOL2 Silent p.P238P 0.15 TCGA-BR-6452-01 20 18163876 18163876 T C CSRP2BP Missense_Mutation p.Y640H 0.08 deleterious(0) probably_damaging(0.997) TCGA-BR-6452-01 20 18464126 18464126 T G POLR3F Missense_Mutation p.V292G 0.11 deleterious(0) probably_damaging(0.958) TCGA-BR-6452-01 20 18523773 18523773 G T SEC23B Missense_Mutation p.G541V 0.16 tolerated(0.09) benign(0.217) TCGA-BR-6452-01 20 1918165 1918165 C T SIRPA Missense_Mutation p.P489L 0.13 deleterious(0) probably_damaging(0.981) TCGA-BR-6452-01 20 19981487 19981487 G A RIN2 Silent p.Q914Q 0.27 TCGA-BR-6452-01 20 20020360 20020360 T C CRNKL1 Missense_Mutation p.T641A 0.10 tolerated(0.59) benign(0.008) TCGA-BR-6452-01 20 20029028 20029028 C T CRNKL1 Nonsense_Mutation p.W299* 0.18 TCGA-BR-6452-01 20 20392719 20392719 C T RALGAPA2 Missense_Mutation p.A1857T 0.10 tolerated(0.11) benign(0.017) TCGA-BR-6452-01 20 20493484 20493484 G A RALGAPA2 Missense_Mutation p.S1510F 0.11 tolerated(0.48) benign(0) TCGA-BR-6452-01 20 21314803 21314803 A T XRN2 Nonsense_Mutation p.K405* 0.08 TCGA-BR-6452-01 20 21367535 21367535 G T XRN2 Missense_Mutation p.W893L 0.09 deleterious_low_confidence(0.03) benign(0.084) TCGA-BR-6452-01 20 21376453 21376453 C T NKX2-4 3'UTR 0.28 TCGA-BR-6452-01 20 21687524 21687524 G A PAX1 Silent p.T245T 0.21 TCGA-BR-6452-01 20 22562417 22562417 C T FOXA2 3'UTR 0.14 TCGA-BR-6452-01 20 22563705 22563705 T C FOXA2 Missense_Mutation p.S59G 0.12 tolerated(0.07) benign(0.003) TCGA-BR-6452-01 20 2291695 2291695 G A TGM3 Missense_Mutation p.E154K 0.08 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 20 23028480 23028480 G A THBD Silent p.C554C 0.21 TCGA-BR-6452-01 20 23065992 23065992 C - CD93 Frame_Shift_Del p.D280Mfs*19 0.22 TCGA-BR-6452-01 20 23473618 23473618 T C CST8 Silent p.L85L 0.10 TCGA-BR-6452-01 20 23728381 23728381 C A CST1 3'UTR 0.25 TCGA-BR-6452-01 20 23966737 23966738 - G GGTLC1 Frame_Shift_Ins p.S94Lfs*57 0.15 TCGA-BR-6452-01 20 2411625 2411625 C T TGM6 Missense_Mutation p.A640V 0.22 tolerated(1) benign(0.001) TCGA-BR-6452-01 20 24930101 24930101 G A CST7 5'UTR 0.18 TCGA-BR-6452-01 20 25259027 25259027 C T PYGB Missense_Mutation p.R310C 0.15 deleterious(0) possibly_damaging(0.643) TCGA-BR-6452-01 20 25319884 25319884 T C ABHD12 Missense_Mutation p.K99E 0.14 deleterious(0.02) possibly_damaging(0.742) TCGA-BR-6452-01 20 25405924 25405924 T C GINS1 Silent p.I136I 0.14 TCGA-BR-6452-01 20 25456724 25456724 A G NINL Missense_Mutation p.V1068A 0.11 tolerated(0.08) benign(0.021) TCGA-BR-6452-01 20 2637611 2637611 A T NOP56 Intron 0.08 TCGA-BR-6452-01 20 2774916 2774916 G A CPXM1 Missense_Mutation p.R709C 0.20 deleterious(0) possibly_damaging(0.88) TCGA-BR-6452-01 20 2795755 2795755 G A C20orf141 5'UTR 0.10 TCGA-BR-6452-01 20 2968692 2968692 A G PTPRA Missense_Mutation p.K181R 0.08 tolerated(0.56) probably_damaging(0.993) TCGA-BR-6452-01 20 30115329 30115329 G A HM13 Missense_Mutation p.A76T 0.10 tolerated(0.19) possibly_damaging(0.739) TCGA-BR-6452-01 20 30231252 30231252 G A COX4I2 Missense_Mutation p.R98H 0.35 tolerated(0.14) benign(0.04) TCGA-BR-6452-01 20 30486365 30486365 A C TTLL9 Missense_Mutation p.K68T 0.13 tolerated(0.38) benign(0.04) TCGA-BR-6452-01 20 30534348 30534348 T - PDRG1 Frame_Shift_Del p.K90Nfs*8 0.11 TCGA-BR-6452-01 20 30556122 30556122 G A XKR7 Silent p.P48P 0.35 TCGA-BR-6452-01 20 30584555 30584555 A G XKR7 Silent p.Q345Q 0.13 TCGA-BR-6452-01 20 30585102 30585102 C T XKR7 Missense_Mutation p.P528S 0.08 tolerated(0.08) probably_damaging(1) TCGA-BR-6452-01 20 30610484 30610484 G A CCM2L Missense_Mutation p.A319T 0.17 deleterious(0.01) possibly_damaging(0.896) TCGA-BR-6452-01 20 31024914 31024914 C A ASXL1 Missense_Mutation p.L1467I 0.08 tolerated(0.24) benign(0.033) TCGA-BR-6452-01 20 31671238 31671238 A - BPIFB4 Frame_Shift_Del p.K80Nfs*153 0.16 TCGA-BR-6452-01 20 31676772 31676772 G A BPIFB4 Silent p.G309G 0.08 TCGA-BR-6452-01 20 31825986 31825986 A G BPIFA1 Missense_Mutation p.T96A 0.09 tolerated(0.12) benign(0.047) TCGA-BR-6452-01 20 31982904 31982904 C T CDK5RAP1 Missense_Mutation p.G108D 0.31 deleterious(0) probably_damaging(0.992) TCGA-BR-6452-01 20 32258498 32258498 A G NECAB3 Silent p.H85H 0.10 TCGA-BR-6452-01 20 32660018 32660018 C A RALY Silent p.G46G 0.07 TCGA-BR-6452-01 20 32848253 32848253 C T ASIP Missense_Mutation p.P25S 0.10 tolerated(0.23) benign(0.004) TCGA-BR-6452-01 20 33026406 33026406 C T ITCH Nonsense_Mutation p.R258* 0.08 TCGA-BR-6452-01 20 33054129 33054130 - T ITCH Intron 0.39 TCGA-BR-6452-01 20 33077191 33077191 G C ITCH Missense_Mutation p.E779D 0.11 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 20 33328893 33328893 C G NCOA6 Missense_Mutation p.A1723P 0.06 probably_damaging(0.93) TCGA-BR-6452-01 20 33509131 33509131 A G ACSS2 Splice_Site p.X439_splice 0.10 TCGA-BR-6452-01 20 33514025 33514025 T A ACSS2 Missense_Mutation p.V628D 0.10 deleterious(0) probably_damaging(0.958) TCGA-BR-6452-01 20 33582006 33582006 G A MYH7B Nonsense_Mutation p.W876* 0.08 TCGA-BR-6452-01 20 33706412 33706412 C T EDEM2 Missense_Mutation p.G409R 0.15 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 20 33879869 33879869 T C FAM83C Missense_Mutation p.Y80C 0.11 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 20 33981905 33981905 C T UQCC1 Missense_Mutation p.R40H 0.13 deleterious_low_confidence(0.02) benign(0.11) TCGA-BR-6452-01 20 34022040 34022040 T C GDF5 Silent p.R391R 0.08 TCGA-BR-6452-01 20 34143804 34143804 A T ERGIC3 Missense_Mutation p.I245F 0.06 tolerated(1) benign(0.008) TCGA-BR-6452-01 20 34220730 34220730 C - CPNE1 Frame_Shift_Del p.G44Afs*43 0.27 TCGA-BR-6452-01 20 34241335 34241335 T - RBM12 Frame_Shift_Del p.K637Rfs*3 0.11 TCGA-BR-6452-01 20 34241387 34241387 T C RBM12 Missense_Mutation p.T620A 0.11 deleterious(0) possibly_damaging(0.653) TCGA-BR-6452-01 20 34242789 34242789 T C RBM12 Silent p.T152T 0.12 TCGA-BR-6452-01 20 35071143 35071143 C T DLGAP4 Missense_Mutation p.A457V 0.08 tolerated(0.18) benign(0.085) TCGA-BR-6452-01 20 35075206 35075206 A T DLGAP4 Missense_Mutation p.Y505F 0.16 tolerated(0.18) probably_damaging(0.958) TCGA-BR-6452-01 20 35125394 35125394 A G DLGAP4 Silent p.E645E 0.11 TCGA-BR-6452-01 20 35240458 35240458 T C C20orf24 Silent p.G88G 0.08 TCGA-BR-6452-01 20 36361416 36361416 A - CTNNBL1 Frame_Shift_Del p.R58Gfs*25 0.41 TCGA-BR-6452-01 20 36572479 36572479 T C VSTM2L Missense_Mutation p.F147L 0.14 tolerated(0.16) possibly_damaging(0.559) TCGA-BR-6452-01 20 36641206 36641206 C T TTI1 Missense_Mutation p.G338E 0.06 deleterious(0) possibly_damaging(0.462) TCGA-BR-6452-01 20 36767989 36767989 A G TGM2 Silent p.D389D 0.19 TCGA-BR-6452-01 20 36869061 36869061 A T KIAA1755 Missense_Mutation p.L491H 0.12 tolerated(0.57) possibly_damaging(0.711) TCGA-BR-6452-01 20 37203703 37203703 A G RALGAPB 3'UTR 0.21 TCGA-BR-6452-01 20 37356973 37356973 C T SLC32A1 Silent p.S423S 0.09 TCGA-BR-6452-01 20 3845392 3845392 T C MAVS Missense_Mutation p.V372A 0.10 tolerated(0.62) benign(0.003) TCGA-BR-6452-01 20 3888740 3888740 G A PANK2 Missense_Mutation p.V266M 0.19 deleterious(0.02) benign(0.376) TCGA-BR-6452-01 20 3899434 3899434 G A PANK2 Silent p.S551S 0.26 TCGA-BR-6452-01 20 39690105 39690105 C T TOP1 Missense_Mutation p.R44W 0.27 deleterious_low_confidence(0) unknown(0) TCGA-BR-6452-01 20 39744080 39744080 G A TOP1 Splice_Site p.X569_splice 0.16 TCGA-BR-6452-01 20 39792036 39792036 C T PLCG1 Missense_Mutation p.R270C 0.19 deleterious(0.05) possibly_damaging(0.631) TCGA-BR-6452-01 20 39798806 39798806 C T PLCG1 Missense_Mutation p.A902V 0.11 tolerated(0.26) benign(0.004) TCGA-BR-6452-01 20 39831411 39831411 T A ZHX3 Missense_Mutation p.I716F 0.10 tolerated(0.12) benign(0.035) TCGA-BR-6452-01 20 39832356 39832356 T C ZHX3 Missense_Mutation p.N401D 0.09 tolerated(0.06) benign(0.097) TCGA-BR-6452-01 20 39987087 39987087 T C LPIN3 Silent p.F772F 0.12 TCGA-BR-6452-01 20 40049561 40049561 T C CHD6 Missense_Mutation p.N1905S 0.08 tolerated_low_confidence(1) benign(0) TCGA-BR-6452-01 20 40085990 40085990 G A CHD6 Missense_Mutation p.R915C 0.24 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 20 40713431 40713431 A T PTPRT Missense_Mutation p.Y1343N 0.13 tolerated(0.07) benign(0.09) TCGA-BR-6452-01 20 40864873 40864873 A G PTPRT Missense_Mutation p.Y780H 0.07 tolerated(0.08) benign(0.276) TCGA-BR-6452-01 20 42159498 42159498 C - L3MBTL1 Frame_Shift_Del p.K398Sfs*5 0.22 TCGA-BR-6452-01 20 42265849 42265849 C T IFT52 Missense_Mutation p.T359M 0.06 tolerated(0.36) benign(0.34) TCGA-BR-6452-01 20 42744457 42744457 C T JPH2 Missense_Mutation p.A620T 0.23 tolerated(0.34) benign(0.023) TCGA-BR-6452-01 20 43058338 43058338 C - HNF4A 3'UTR 0.19 TCGA-BR-6452-01 20 43583713 43583713 T C TOMM34 Missense_Mutation p.N126D 0.12 deleterious(0) possibly_damaging(0.78) TCGA-BR-6452-01 20 43739138 43739138 G A WFDC5 Silent p.S90S 0.09 TCGA-BR-6452-01 20 43945607 43945607 C T RBPJL 3'UTR 0.22 TCGA-BR-6452-01 20 44166681 44166681 A G WFDC6 Silent p.C48C 0.11 TCGA-BR-6452-01 20 44469372 44469372 A C SNX21 Missense_Mutation p.N181T 0.10 tolerated(0.89) benign(0.015) TCGA-BR-6452-01 20 44486374 44486374 C T ZSWIM3 5'UTR 0.12 TCGA-BR-6452-01 20 44505771 44505771 T C ZSWIM3 Missense_Mutation p.F192L 0.10 tolerated(1) benign(0.001) TCGA-BR-6452-01 20 44515632 44515632 C T SPATA25 Missense_Mutation p.A70T 0.09 deleterious_low_confidence(0.01) probably_damaging(0.919) TCGA-BR-6452-01 20 44596981 44596981 C T ZNF335 Missense_Mutation p.A155T 0.11 deleterious(0) possibly_damaging(0.752) TCGA-BR-6452-01 20 44640886 44640886 C T MMP9 Missense_Mutation p.R370C 0.10 deleterious(0) possibly_damaging(0.865) TCGA-BR-6452-01 20 44664156 44664156 A - SLC12A5 Frame_Shift_Del p.K112Rfs*62 0.16 TCGA-BR-6452-01 20 44691317 44691317 C T NCOA5 Silent p.S454S 0.10 TCGA-BR-6452-01 20 44983738 44983738 T C SLC35C2 Missense_Mutation p.Q184R 0.17 deleterious(0.03) possibly_damaging(0.798) TCGA-BR-6452-01 20 44996115 44996115 G A ELMO2 Silent p.L683L 0.13 TCGA-BR-6452-01 20 44999996 44999996 T A ELMO2 Missense_Mutation p.E599V 0.08 deleterious(0.03) benign(0.104) TCGA-BR-6452-01 20 45130769 45130769 T - ZNF334 Frame_Shift_Del p.K403Nfs*51 0.23 TCGA-BR-6452-01 20 45130828 45130828 T C ZNF334 Missense_Mutation p.K384E 0.08 deleterious(0.02) benign(0.406) TCGA-BR-6452-01 20 45354435 45354435 G A SLC2A10 Missense_Mutation p.A254T 0.15 deleterious(0) probably_damaging(0.997) TCGA-BR-6452-01 20 45985438 45985438 A C ZMYND8 5'Flank 0.10 TCGA-BR-6452-01 20 46264348 46264348 C - NCOA3 Frame_Shift_Del p.P467Hfs*15 0.12 TCGA-BR-6452-01 20 46281156 46281156 G A NCOA3 Missense_Mutation p.G1318E 0.12 deleterious(0.04) possibly_damaging(0.597) TCGA-BR-6452-01 20 4680403 4680403 C T PRNP Silent p.C179C 0.12 TCGA-BR-6452-01 20 4680596 4680596 A T PRNP Missense_Mutation p.I244F 0.19 deleterious(0) unknown(0) TCGA-BR-6452-01 20 47266665 47266665 T C PREX1 Missense_Mutation p.D966G 0.06 deleterious(0) probably_damaging(0.952) TCGA-BR-6452-01 20 47266692 47266693 - G PREX1 Frame_Shift_Ins p.L957Pfs*50 0.11 TCGA-BR-6452-01 20 47601286 47601286 G - ARFGEF2 Frame_Shift_Del p.I662Sfs*17 0.17 TCGA-BR-6452-01 20 47601974 47601974 C T ARFGEF2 Silent p.S700S 0.12 TCGA-BR-6452-01 20 47630429 47630429 T C ARFGEF2 Missense_Mutation p.W1371R 0.08 deleterious(0) probably_damaging(0.989) TCGA-BR-6452-01 20 47863988 47863988 C T ZNFX1 Missense_Mutation p.G1858D 0.07 deleterious(0.03) benign(0.415) TCGA-BR-6452-01 20 47874037 47874037 C T ZNFX1 Missense_Mutation p.A861T 0.09 tolerated(0.06) benign(0.403) TCGA-BR-6452-01 20 47990019 47990019 T A KCNB1 Missense_Mutation p.D693V 0.12 tolerated_low_confidence(0.18) benign(0.006) TCGA-BR-6452-01 20 49218812 49218812 C A FAM65C Missense_Mutation p.G482C 0.25 deleterious(0.02) possibly_damaging(0.882) TCGA-BR-6452-01 20 49225053 49225053 G T FAM65C Missense_Mutation p.L273M 0.09 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 20 49509355 49509355 T - ADNP Frame_Shift_Del p.G633Dfs*43 0.27 TCGA-BR-6452-01 20 49575045 49575045 C G DPM1 Missense_Mutation p.V6L 0.14 deleterious_low_confidence(0.03) unknown(0) TCGA-BR-6452-01 20 50139780 50139780 C T NFATC2 Missense_Mutation p.A334T 0.11 tolerated(0.59) benign(0.002) TCGA-BR-6452-01 20 50235532 50235532 C T ATP9A Silent p.K722K 0.10 TCGA-BR-6452-01 20 50406794 50406794 A G SALL4 Missense_Mutation p.L743P 0.09 deleterious(0) possibly_damaging(0.892) TCGA-BR-6452-01 20 51871037 51871039 AGA - TSHZ2 In_Frame_Del p.K348del 0.17 TCGA-BR-6452-01 20 52198090 52198090 C T ZNF217 Missense_Mutation p.A426T 0.16 tolerated(0.62) benign(0.001) TCGA-BR-6452-01 20 52573988 52573988 T C BCAS1 Missense_Mutation p.K467E 0.10 deleterious(0.02) possibly_damaging(0.673) TCGA-BR-6452-01 20 55748227 55748227 A G BMP7 Intron 0.19 TCGA-BR-6452-01 20 56179539 56179539 A G ZBP1 3'UTR 0.17 TCGA-BR-6452-01 20 56735739 56735739 C T C20orf85 Missense_Mutation p.P92L 0.10 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 20 57244488 57244488 G A STX16 Missense_Mutation p.A179T 0.10 tolerated(0.48) benign(0.004) TCGA-BR-6452-01 20 57429108 57429108 C T GNAS Missense_Mutation p.A263V 0.36 deleterious_low_confidence(0.02) unknown(0) TCGA-BR-6452-01 20 57566480 57566480 C T NELFCD Silent p.S374S 0.10 TCGA-BR-6452-01 20 57766438 57766438 C T ZNF831 Missense_Mutation p.P122S 0.11 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 20 57766652 57766652 C T ZNF831 Missense_Mutation p.T193M 0.19 deleterious(0) probably_damaging(0.998) TCGA-BR-6452-01 20 57766659 57766659 G A ZNF831 Silent p.T195T 0.10 TCGA-BR-6452-01 20 58443507 58443508 - T SYCP2 Frame_Shift_Ins p.L1317Tfs*3 0.17 TCGA-BR-6452-01 20 58533771 58533771 G A CDH26 5'UTR 0.13 TCGA-BR-6452-01 20 58883599 58883599 T C MIR646 RNA 0.09 TCGA-BR-6452-01 20 5897496 5897496 C A CHGB Missense_Mutation p.L41I 0.08 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 20 5948575 5948575 G T MCM8 Missense_Mutation p.G376V 0.30 deleterious(0.02) benign(0.183) TCGA-BR-6452-01 20 61143670 61143670 G A C20orf166 5'Flank 0.18 TCGA-BR-6452-01 20 61941211 61941211 C T COL20A1 Missense_Mutation p.H403Y 0.24 tolerated(0.26) benign(0.003) TCGA-BR-6452-01 20 62038197 62038197 T C KCNQ2 Missense_Mutation p.I807V 0.19 deleterious(0) possibly_damaging(0.728) TCGA-BR-6452-01 20 62121899 62121899 C T EEF1A2 Missense_Mutation p.R321Q 0.24 deleterious_low_confidence(0.01) benign(0.321) TCGA-BR-6452-01 20 62192702 62192702 C T HELZ2 Splice_Site p.X2318_splice 0.10 TCGA-BR-6452-01 20 62196064 62196064 G A HELZ2 Missense_Mutation p.H1371Y 0.18 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 20 62378537 62378537 C T ZBTB46 Missense_Mutation p.G506S 0.25 tolerated(0.12) probably_damaging(0.996) TCGA-BR-6452-01 20 62705223 62705223 A T RGS19 Missense_Mutation p.S213T 0.13 tolerated(0.25) benign(0.049) TCGA-BR-6452-01 20 62737989 62737989 C T NPBWR2 Missense_Mutation p.V66I 0.25 tolerated(0.07) benign(0.023) TCGA-BR-6452-01 20 62896678 62896678 T C PCMTD2 Missense_Mutation p.Y160H 0.05 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 20 6759494 6759494 C - BMP2 Frame_Shift_Del p.P318Rfs*20 0.17 TCGA-BR-6452-01 20 9546626 9546626 C T PAK7 Missense_Mutation p.A466T 0.08 deleterious(0) probably_damaging(0.997) TCGA-BR-6452-01 21 10944703 10944704 - C TPTE Frame_Shift_Ins p.I177Mfs*4 0.10 TCGA-BR-6452-01 21 15889284 15889284 T - SAMSN1 Frame_Shift_Del p.M138* 0.13 TCGA-BR-6452-01 21 17172081 17172081 A T USP25 Missense_Mutation p.L187F 0.07 deleterious(0) possibly_damaging(0.849) TCGA-BR-6452-01 21 17177457 17177457 T - USP25 Frame_Shift_Del p.F221Lfs*5 0.26 TCGA-BR-6452-01 21 17203831 17203831 A T USP25 Missense_Mutation p.I626F 0.08 deleterious(0) benign(0.288) TCGA-BR-6452-01 21 22746311 22746311 G A NCAM2 Silent p.K391K 0.13 TCGA-BR-6452-01 21 27102015 27102015 C T ATP5J Missense_Mutation p.A39T 0.22 tolerated(0.1) probably_damaging(0.957) TCGA-BR-6452-01 21 27372463 27372463 G A APP Silent p.C300C 0.08 TCGA-BR-6452-01 21 27852713 27852713 A C CYYR1 Missense_Mutation p.V71G 0.11 deleterious(0) probably_damaging(0.987) TCGA-BR-6452-01 21 27945320 27945320 G T CYYR1 5'UTR 0.23 TCGA-BR-6452-01 21 28302342 28302342 G A ADAMTS5 Silent p.S696S 0.19 TCGA-BR-6452-01 21 30380219 30380219 A T RWDD2B Missense_Mutation p.H196Q 0.12 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 21 30409640 30409640 A G USP16 Silent p.L164L 0.14 TCGA-BR-6452-01 21 30910122 30910122 C T GRIK1 Silent p.E897E 0.08 TCGA-BR-6452-01 21 31720870 31720870 G T KRTAP23-1 Missense_Mutation p.L19M 0.09 tolerated_low_confidence(0.13) unknown(0) TCGA-BR-6452-01 21 31802878 31802878 G T KRTAP13-4 Missense_Mutation p.Q95H 0.14 deleterious(0.01) possibly_damaging(0.796) TCGA-BR-6452-01 21 33647200 33647200 G T MIS18A Silent p.S114S 0.19 TCGA-BR-6452-01 21 34117160 34117160 T C PAXBP1 Silent p.T711T 0.11 TCGA-BR-6452-01 21 34136657 34136657 A G PAXBP1 Splice_Site p.X217_splice 0.10 TCGA-BR-6452-01 21 34619086 34619086 C T IFNAR2 Silent p.L95L 0.12 TCGA-BR-6452-01 21 34619165 34619165 T C IFNAR2 Missense_Mutation p.C122R 0.15 deleterious(0) probably_damaging(0.993) TCGA-BR-6452-01 21 34660535 34660535 C T IL10RB Missense_Mutation p.P258L 0.24 deleterious(0.04) benign(0.33) TCGA-BR-6452-01 21 34837700 34837700 T C TMEM50B Missense_Mutation p.N77D 0.09 deleterious(0) probably_damaging(0.944) TCGA-BR-6452-01 21 34897169 34897169 T G GART Missense_Mutation p.E402A 0.08 tolerated(0.53) benign(0.01) TCGA-BR-6452-01 21 34923142 34923142 G A SON Silent p.G535G 0.24 TCGA-BR-6452-01 21 36206799 36206799 A G RUNX1 Missense_Mutation p.V238A 0.09 deleterious(0.01) benign(0.197) TCGA-BR-6452-01 21 37093039 37093039 A T MIR802 RNA 0.08 TCGA-BR-6452-01 21 37408417 37408417 A G SETD4 Nonstop_Mutation p.*441Rext*109 0.21 TCGA-BR-6452-01 21 37507593 37507593 C T CBR3 Missense_Mutation p.L35F 0.11 deleterious(0.02) probably_damaging(0.995) TCGA-BR-6452-01 21 37781130 37781130 T C CHAF1B Splice_Site p.X276_splice 0.22 TCGA-BR-6452-01 21 38460521 38460521 T C TTC3 Silent p.C71C 0.15 TCGA-BR-6452-01 21 38538826 38538826 A G TTC3 Missense_Mutation p.H1437R 0.14 tolerated(0.22) benign(0.011) TCGA-BR-6452-01 21 38593856 38593856 A T DSCR3 3'Flank 0.14 TCGA-BR-6452-01 21 38604795 38604795 G A DSCR3 Intron 0.13 TCGA-BR-6452-01 21 39671242 39671242 C T KCNJ15 Missense_Mutation p.A20V 0.30 tolerated(0.35) benign(0) TCGA-BR-6452-01 21 39671343 39671343 C A KCNJ15 Missense_Mutation p.L54M 0.12 tolerated(0.19) probably_damaging(0.959) TCGA-BR-6452-01 21 40250774 40250774 C A AF064858.6 RNA 0.11 TCGA-BR-6452-01 21 40642230 40642230 T A BRWD1 Silent p.G458G 0.17 TCGA-BR-6452-01 21 40670420 40670420 C G BRWD1 Missense_Mutation p.S96T 0.13 tolerated(0.05) probably_damaging(0.914) TCGA-BR-6452-01 21 41423886 41423886 C T DSCAM Silent p.T1728T 0.24 TCGA-BR-6452-01 21 41452117 41452117 C T DSCAM Missense_Mutation p.R1461H 0.06 deleterious(0) probably_damaging(0.998) TCGA-BR-6452-01 21 41648131 41648131 G A DSCAM Missense_Mutation p.S750L 0.21 deleterious(0.03) probably_damaging(0.998) TCGA-BR-6452-01 21 42780168 42780168 C T MX2 3'UTR 0.19 TCGA-BR-6452-01 21 43412166 43412166 C T ZBTB21 Missense_Mutation p.R680H 0.11 tolerated(0.54) probably_damaging(0.98) TCGA-BR-6452-01 21 43413493 43413493 T C ZBTB21 Missense_Mutation p.N238D 0.10 tolerated(0.05) benign(0.15) TCGA-BR-6452-01 21 43496156 43496156 G A UMODL1 Missense_Mutation p.R40H 0.09 deleterious(0.02) possibly_damaging(0.715) TCGA-BR-6452-01 21 43704740 43704740 A G ABCG1 Missense_Mutation p.I269V 0.08 tolerated(0.48) benign(0.009) TCGA-BR-6452-01 21 44270183 44270183 C T WDR4 Silent p.P405P 0.19 TCGA-BR-6452-01 21 44482463 44482463 T C CBS Missense_Mutation p.T333A 0.15 tolerated(0.57) benign(0) TCGA-BR-6452-01 21 44515553 44515553 C T U2AF1 Missense_Mutation p.V115I 0.20 tolerated(0.17) benign(0.074) TCGA-BR-6452-01 21 45502855 45502855 G A TRAPPC10 Missense_Mutation p.S637N 0.21 tolerated(0.55) benign(0.003) TCGA-BR-6452-01 21 45668961 45668961 C T DNMT3L Missense_Mutation p.G315R 0.28 tolerated(0.7) benign(0) TCGA-BR-6452-01 21 45941774 45941774 A T TSPEAR Missense_Mutation p.S520T 0.10 tolerated(0.28) benign(0.219) TCGA-BR-6452-01 21 45959687 45959687 T G KRTAP10-1 Missense_Mutation p.K116T 0.07 tolerated(0.27) unknown(0) TCGA-BR-6452-01 21 46276138 46276138 C T PTTG1IP Missense_Mutation p.R140Q 0.22 tolerated(0.19) benign(0.016) TCGA-BR-6452-01 21 46888239 46888239 G A COL18A1 Missense_Mutation p.V244I 0.37 unknown(0) TCGA-BR-6452-01 21 47360012 47360012 G A PCBP3 Silent p.Q326Q 0.08 TCGA-BR-6452-01 21 47360061 47360061 A G PCBP3 Missense_Mutation p.I343V 0.10 deleterious(0.01) probably_damaging(0.997) TCGA-BR-6452-01 21 47423435 47423435 G A COL6A1 Silent p.T865T 0.12 TCGA-BR-6452-01 21 47545929 47545929 C T COL6A2 Missense_Mutation p.R734C 0.23 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 21 47611134 47611134 C T LSS Missense_Mutation p.V695I 0.24 tolerated(0.17) possibly_damaging(0.497) TCGA-BR-6452-01 21 47625811 47625811 C T LSS Missense_Mutation p.V537M 0.25 deleterious(0) probably_damaging(0.935) TCGA-BR-6452-01 21 47975893 47975893 A G DIP2A Splice_Site p.X1130_splice 0.09 TCGA-BR-6452-01 21 48064237 48064237 A G PRMT2 Missense_Mutation p.E55G 0.10 deleterious(0.01) possibly_damaging(0.689) TCGA-BR-6452-01 22 17449187 17449187 C T GAB4 Splice_Site p.X341_splice 0.29 TCGA-BR-6452-01 22 17589268 17589268 G A IL17RA Missense_Mutation p.D387N 0.28 deleterious(0) probably_damaging(0.994) TCGA-BR-6452-01 22 18171803 18171803 C T BCL2L13 Missense_Mutation p.A94V 0.09 tolerated(0.19) probably_damaging(0.997) TCGA-BR-6452-01 22 18209815 18209815 G A BCL2L13 Missense_Mutation p.A325T 0.11 tolerated(0.15) benign(0.012) TCGA-BR-6452-01 22 18387532 18387532 A C MICAL3 Missense_Mutation p.V113G 0.08 probably_damaging(1) TCGA-BR-6452-01 22 19120099 19120099 C T TSSK2 3'UTR 0.16 TCGA-BR-6452-01 22 19341549 19341549 G A HIRA Missense_Mutation p.P885L 0.19 tolerated(0.13) probably_damaging(1) TCGA-BR-6452-01 22 19752591 19752591 C T TBX1 Silent p.F265F 0.11 TCGA-BR-6452-01 22 19960547 19960547 G A ARVCF Silent p.R817R 0.33 TCGA-BR-6452-01 22 20760242 20760242 G A ZNF74 Missense_Mutation p.G307S 0.31 tolerated(1) benign(0.072) TCGA-BR-6452-01 22 20800921 20800921 T C KLHL22 Missense_Mutation p.I450V 0.08 tolerated(0.2) benign(0.068) TCGA-BR-6452-01 22 20800941 20800941 G A KLHL22 Missense_Mutation p.T443M 0.21 deleterious(0.04) possibly_damaging(0.451) TCGA-BR-6452-01 22 21156280 21156280 C T PI4KA Missense_Mutation p.A569T 0.20 deleterious(0) possibly_damaging(0.866) TCGA-BR-6452-01 22 21288079 21288079 A T CRKL Silent p.P108P 0.07 TCGA-BR-6452-01 22 22277457 22277457 G A PPM1F 3'UTR 0.22 TCGA-BR-6452-01 22 22316889 22316889 G A TOP3B Silent p.G479G 0.12 TCGA-BR-6452-01 22 22385665 22385665 G A IGLV4-69 Missense_Mutation p.A52T 0.20 tolerated(0.41) benign(0.001) TCGA-BR-6452-01 22 22677192 22677192 C T IGLV1-51 Nonsense_Mutation p.R74* 0.10 TCGA-BR-6452-01 22 22730655 22730655 T C IGLV5-45 Silent p.G50G 0.15 TCGA-BR-6452-01 22 22786500 22786500 C T IGLV1-36 Missense_Mutation p.S17F 0.08 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-BR-6452-01 22 22931038 22931038 G T IGLV2-33 Missense_Mutation p.G78V 0.08 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-BR-6452-01 22 23011168 23011168 T C IGLV3-27 Silent p.P77P 0.11 TCGA-BR-6452-01 22 23438549 23438549 A G GNAZ Missense_Mutation p.I223V 0.06 tolerated(0.1) benign(0.18) TCGA-BR-6452-01 22 23465488 23465488 G A GNAZ Missense_Mutation p.R313H 0.20 deleterious(0.03) possibly_damaging(0.668) TCGA-BR-6452-01 22 24034437 24034437 G T RGL4 Intron 0.11 TCGA-BR-6452-01 22 24143232 24143232 G A SMARCB1 Missense_Mutation p.R155H 0.11 deleterious(0.02) benign(0.109) TCGA-BR-6452-01 22 24459471 24459471 T C CABIN1 Silent p.P582P 0.06 TCGA-BR-6452-01 22 24580778 24580778 T C SUSD2 Missense_Mutation p.Y218H 0.09 deleterious(0.02) probably_damaging(0.967) TCGA-BR-6452-01 22 24658515 24658515 C T POM121L9P RNA 0.15 TCGA-BR-6452-01 22 24717913 24717913 T C SPECC1L Missense_Mutation p.V322A 0.11 tolerated(0.35) benign(0.019) TCGA-BR-6452-01 22 24953712 24953712 A - SNRPD3 Frame_Shift_Del p.T24Pfs*16 0.11 TCGA-BR-6452-01 22 26860374 26860374 C T HPS4 Missense_Mutation p.A408T 0.17 tolerated(0.34) benign(0.002) TCGA-BR-6452-01 22 28256181 28256181 G T PITPNB Missense_Mutation p.L195M 0.08 deleterious(0) probably_damaging(0.994) TCGA-BR-6452-01 22 28293787 28293787 A G PITPNB Splice_Site p.X97_splice 0.10 TCGA-BR-6452-01 22 29534823 29534823 T C KREMEN1 Splice_Site p.X392_splice 0.26 TCGA-BR-6452-01 22 29683072 29683072 A G EWSR1 Missense_Mutation p.S254G 0.16 tolerated(0.15) unknown(0) TCGA-BR-6452-01 22 29707029 29707029 G - GAS2L1 3'UTR 0.26 TCGA-BR-6452-01 22 29735105 29735105 G A AP1B1 Silent p.F679F 0.07 TCGA-BR-6452-01 22 30038225 30038225 G A NF2 Missense_Mutation p.C133Y 0.10 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 22 30127247 30127247 C - ZMAT5 Frame_Shift_Del p.W161Gfs*17 0.14 TCGA-BR-6452-01 22 30185132 30185132 C T ASCC2 Missense_Mutation p.R715Q 0.07 deleterious(0.01) benign(0.285) TCGA-BR-6452-01 22 30691001 30691001 G A TBC1D10A Missense_Mutation p.R197W 0.19 deleterious(0) probably_damaging(0.993) TCGA-BR-6452-01 22 30730630 30730630 C T SF3A1 Missense_Mutation p.A779T 0.25 tolerated(0.42) benign(0.024) TCGA-BR-6452-01 22 30738209 30738209 T C SF3A1 Missense_Mutation p.D286G 0.08 deleterious(0) probably_damaging(0.992) TCGA-BR-6452-01 22 31091460 31091460 G A OSBP2 Nonsense_Mutation p.W188* 0.10 TCGA-BR-6452-01 22 31673000 31673000 C T LIMK2 Silent p.D645D 0.13 TCGA-BR-6452-01 22 33733731 33733731 A G LARGE Silent p.F396F 0.09 TCGA-BR-6452-01 22 35804510 35804510 G A MCM5 Missense_Mutation p.V236I 0.11 tolerated(0.11) benign(0.05) TCGA-BR-6452-01 22 36054697 36054697 A T APOL6 Missense_Mutation p.E29V 0.08 deleterious(0.04) probably_damaging(0.98) TCGA-BR-6452-01 22 36055239 36055239 G A APOL6 Missense_Mutation p.V210I 0.16 deleterious(0.04) possibly_damaging(0.874) TCGA-BR-6452-01 22 36140273 36140273 G A RBFOX2 Silent p.Y445Y 0.13 TCGA-BR-6452-01 22 36624003 36624003 C T APOL2 Missense_Mutation p.G154D 0.15 deleterious(0) possibly_damaging(0.903) TCGA-BR-6452-01 22 36684948 36684948 T C MYH9 Missense_Mutation p.Q1532R 0.11 benign(0.356) TCGA-BR-6452-01 22 36902087 36902087 T C FOXRED2 Missense_Mutation p.Y128C 0.11 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 22 37334205 37334205 C - CSF2RB Frame_Shift_Del p.P787Lfs*8 0.21 TCGA-BR-6452-01 22 37603822 37603822 T C SSTR3 Silent p.S7S 0.12 TCGA-BR-6452-01 22 37695345 37695345 C T CYTH4 Silent p.L144L 0.10 TCGA-BR-6452-01 22 37707044 37707044 C T CYTH4 Missense_Mutation p.T275M 0.14 deleterious(0.05) probably_damaging(0.993) TCGA-BR-6452-01 22 37708129 37708129 C T CYTH4 Silent p.D342D 0.14 TCGA-BR-6452-01 22 37709571 37709572 - G CYTH4 3'UTR 0.26 TCGA-BR-6452-01 22 37770240 37770240 A G ELFN2 Silent p.A445A 0.20 TCGA-BR-6452-01 22 37771126 37771126 C T ELFN2 Missense_Mutation p.C150Y 0.21 deleterious(0) probably_damaging(0.998) TCGA-BR-6452-01 22 38026068 38026068 C - GGA1 Frame_Shift_Del p.P409Qfs*15 0.11 TCGA-BR-6452-01 22 38046210 38046210 C T SH3BP1 Silent p.G456G 0.19 TCGA-BR-6452-01 22 38524328 38524328 A T PLA2G6 Missense_Mutation p.H432Q 0.11 tolerated(0.59) benign(0.002) TCGA-BR-6452-01 22 38824086 38824086 G A KCNJ4 Missense_Mutation p.R18C 0.08 deleterious(0) benign(0.033) TCGA-BR-6452-01 22 38877230 38877233 TCTC - KDELR3 Frame_Shift_Del p.F122Lfs*15 0.18 TCGA-BR-6452-01 22 39382383 39382383 G A APOBEC3B Missense_Mutation p.A179T 0.26 tolerated(0.61) probably_damaging(0.989) TCGA-BR-6452-01 22 39482481 39482481 T C APOBEC3G Silent p.T311T 0.06 TCGA-BR-6452-01 22 39715086 39715086 T A RPL3 Intron 0.24 TCGA-BR-6452-01 22 39907986 39907986 C T MIEF1 Missense_Mutation p.R93W 0.18 deleterious(0.01) probably_damaging(0.94) TCGA-BR-6452-01 22 39910325 39910325 G A MIEF1 Silent p.T463T 0.22 TCGA-BR-6452-01 22 40055777 40055777 T C CACNA1I Missense_Mutation p.F842L 0.07 deleterious(0) benign(0.006) TCGA-BR-6452-01 22 40061520 40061520 C T CACNA1I Missense_Mutation p.P1290L 0.17 deleterious(0) probably_damaging(0.913) TCGA-BR-6452-01 22 40661413 40661413 A T TNRC6B Silent p.G393G 0.12 TCGA-BR-6452-01 22 41077411 41077411 T C MCHR1 Missense_Mutation p.Y250H 0.08 deleterious(0.04) probably_damaging(0.993) TCGA-BR-6452-01 22 41645453 41645453 A G RANGAP1 Silent p.S525S 0.17 TCGA-BR-6452-01 22 41833079 41833079 T C TOB2 Missense_Mutation p.S91G 0.10 deleterious(0) possibly_damaging(0.894) TCGA-BR-6452-01 22 42262990 42262990 G A SREBF2 Missense_Mutation p.G82R 0.12 tolerated(0.28) benign(0.016) TCGA-BR-6452-01 22 42269866 42269866 T C SREBF2 Missense_Mutation p.V311A 0.12 deleterious(0) benign(0.103) TCGA-BR-6452-01 22 42906698 42906698 A G RRP7A 3'UTR 0.10 TCGA-BR-6452-01 22 42969952 42969952 T C SERHL2 Missense_Mutation p.F279S 0.10 deleterious(0.01) possibly_damaging(0.718) TCGA-BR-6452-01 22 43286998 43286998 G A PACSIN2 Silent p.D136D 0.22 TCGA-BR-6452-01 22 43950910 43950910 C T EFCAB6 Missense_Mutation p.D1163N 0.21 tolerated(1) benign(0) TCGA-BR-6452-01 22 43950972 43950972 G A EFCAB6 Missense_Mutation p.A1142V 0.15 deleterious(0.01) probably_damaging(0.968) TCGA-BR-6452-01 22 43950974 43950974 T G EFCAB6 Silent p.T1141T 0.19 TCGA-BR-6452-01 22 45598993 45598993 G A KIAA0930 Missense_Mutation p.R249C 0.21 deleterious(0) probably_damaging(0.927) TCGA-BR-6452-01 22 45728581 45728581 G A FAM118A Silent p.Q309Q 0.12 TCGA-BR-6452-01 22 46655545 46655545 A T PKDREJ Missense_Mutation p.D1225E 0.08 deleterious(0) probably_damaging(0.99) TCGA-BR-6452-01 22 46655740 46655740 C A PKDREJ Missense_Mutation p.M1160I 0.24 deleterious(0.01) benign(0.07) TCGA-BR-6452-01 22 46712215 46712215 T C GTSE1 Silent p.T446T 0.08 TCGA-BR-6452-01 22 46719117 46719117 T G GTSE1 Missense_Mutation p.L488R 0.11 tolerated(0.35) benign(0.003) TCGA-BR-6452-01 22 46760471 46760471 G - CELSR1 Frame_Shift_Del p.P2906Rfs*24 0.09 TCGA-BR-6452-01 22 46929687 46929687 G T CELSR1 Silent p.I1127I 0.12 TCGA-BR-6452-01 22 46931227 46931227 C - CELSR1 Frame_Shift_Del p.G614Afs*54 0.25 TCGA-BR-6452-01 22 47070532 47070532 C T GRAMD4 Intron 0.10 TCGA-BR-6452-01 22 47086002 47086002 C - CERK Frame_Shift_Del p.K477Rfs*74 0.32 TCGA-BR-6452-01 22 47086049 47086049 T C CERK Missense_Mutation p.T461A 0.16 tolerated(0.07) benign(0.014) TCGA-BR-6452-01 22 47189568 47189568 C T TBC1D22A Missense_Mutation p.T97M 0.19 deleterious(0) possibly_damaging(0.901) TCGA-BR-6452-01 22 47507445 47507445 C T TBC1D22A Silent p.C457C 0.25 TCGA-BR-6452-01 22 50277749 50277749 A - ZBED4 Frame_Shift_Del p.N148Tfs*5 0.23 TCGA-BR-6452-01 22 50280486 50280486 C T ZBED4 Missense_Mutation p.A1059V 0.08 tolerated(0.57) benign(0.001) TCGA-BR-6452-01 22 50298028 50298028 G A ALG12 Silent p.G373G 0.18 TCGA-BR-6452-01 22 50313888 50313888 C T CRELD2 Silent p.D136D 0.14 TCGA-BR-6452-01 22 50437776 50437776 T G IL17REL Splice_Site p.X183_splice 0.24 TCGA-BR-6452-01 22 50599130 50599130 A G MOV10L1 Missense_Mutation p.E1113G 0.10 tolerated(0.07) benign(0.417) TCGA-BR-6452-01 22 50617616 50617616 G - PANX2 Frame_Shift_Del p.D650Tfs*23 0.24 TCGA-BR-6452-01 22 50878428 50878428 C T PPP6R2 Missense_Mutation p.T749I 0.10 tolerated(0.08) benign(0.336) TCGA-BR-6452-01 22 51021032 51021033 - C CHKB Frame_Shift_Ins p.A60Gfs*150 0.10 TCGA-BR-6452-01 2 10130832 10130832 G A GRHL1 Silent p.E426E 0.22 TCGA-BR-6452-01 2 10130874 10130874 A G GRHL1 Silent p.K440K 0.13 TCGA-BR-6452-01 2 101584868 101584868 G A NPAS2 Missense_Mutation p.V345M 0.26 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 2 101591290 101591290 G A NPAS2 Missense_Mutation p.R389Q 0.13 tolerated(1) benign(0) TCGA-BR-6452-01 2 101889497 101889499 TCA - CNOT11 3'Flank 0.13 TCGA-BR-6452-01 2 102490623 102490623 T A MAP4K4 Missense_Mutation p.N905K 0.20 deleterious_low_confidence(0.02) probably_damaging(0.988) TCGA-BR-6452-01 2 102781255 102781255 A - IL1R1 Frame_Shift_Del p.I30* 0.33 TCGA-BR-6452-01 2 102842390 102842390 C A IL1RL2 Missense_Mutation p.L342I 0.19 tolerated(0.16) benign(0.073) TCGA-BR-6452-01 2 102955465 102955465 C T IL1RL1 Missense_Mutation p.A77V 0.05 deleterious(0.01) probably_damaging(0.938) TCGA-BR-6452-01 2 103040692 103040692 A C IL18RAP Missense_Mutation p.S133R 0.19 tolerated(0.26) benign(0.009) TCGA-BR-6452-01 2 103090419 103090419 G A SLC9A4 Silent p.V67V 0.09 TCGA-BR-6452-01 2 103121821 103121821 G C SLC9A4 Missense_Mutation p.E363D 0.25 tolerated(0.1) probably_damaging(0.952) TCGA-BR-6452-01 2 103125345 103125345 A - SLC9A4 Frame_Shift_Del p.T483Pfs*15 0.21 TCGA-BR-6452-01 2 103130670 103130670 A G SLC9A4 Missense_Mutation p.T561A 0.09 tolerated(0.19) benign(0.118) TCGA-BR-6452-01 2 103414435 103414435 G - TMEM182 Frame_Shift_Del p.G150Efs*15 0.19 TCGA-BR-6452-01 2 10559932 10559932 C T HPCAL1 Missense_Mutation p.R17W 0.21 deleterious(0.01) benign(0.035) TCGA-BR-6452-01 2 105984137 105984137 G T FHL2 Missense_Mutation p.R131S 0.23 tolerated(0.48) benign(0.44) TCGA-BR-6452-01 2 106690348 106690348 T C C2orf40 Missense_Mutation p.V45A 0.10 tolerated(1) benign(0) TCGA-BR-6452-01 2 10729348 10729348 T - NOL10 Frame_Shift_Del p.A556Pfs*19 0.08 TCGA-BR-6452-01 2 10729375 10729375 T C NOL10 Silent p.E546E 0.09 TCGA-BR-6452-01 2 1079240 1079240 T A SNTG2 Missense_Mutation p.S37T 0.09 tolerated(0.24) benign(0.006) TCGA-BR-6452-01 2 108487789 108487789 C T RGPD4 Missense_Mutation p.A1110V 0.22 deleterious(0) probably_damaging(0.985) TCGA-BR-6452-01 2 109087914 109087914 T - GCC2 Frame_Shift_Del p.L712Cfs*16 0.10 TCGA-BR-6452-01 2 109368125 109368125 G A RANBP2 Missense_Mutation p.D533N 0.13 tolerated(0.18) benign(0.048) TCGA-BR-6452-01 2 109369546 109369546 A - RANBP2 Frame_Shift_Del p.K618Rfs*19 0.15 TCGA-BR-6452-01 2 109369953 109369953 T A RANBP2 Missense_Mutation p.N663K 0.09 tolerated(0.82) benign(0.022) TCGA-BR-6452-01 2 109371632 109371632 T A RANBP2 Missense_Mutation p.Y795N 0.08 tolerated(0.18) benign(0.098) TCGA-BR-6452-01 2 109380767 109380767 G A RANBP2 Missense_Mutation p.A1258T 0.18 deleterious(0.03) benign(0.009) TCGA-BR-6452-01 2 109380996 109380996 T C RANBP2 Missense_Mutation p.I1334T 0.11 tolerated(0.71) benign(0.006) TCGA-BR-6452-01 2 109421455 109421455 A - CCDC138 Frame_Shift_Del p.K284Nfs*3 0.24 TCGA-BR-6452-01 2 109526978 109526978 C T EDAR Silent p.V247V 0.10 TCGA-BR-6452-01 2 110373498 110373498 A G SOWAHC Missense_Mutation p.R478G 0.10 deleterious(0) possibly_damaging(0.717) TCGA-BR-6452-01 2 113089388 113089388 C G ZC3H6 Missense_Mutation p.L965V 0.09 tolerated(0.21) possibly_damaging(0.708) TCGA-BR-6452-01 2 113090015 113090015 C T ZC3H6 Silent p.L1174L 0.11 TCGA-BR-6452-01 2 113332742 113332742 A G POLR1B Silent p.T948T 0.09 TCGA-BR-6452-01 2 113513703 113513703 T C CKAP2L Silent p.A415A 0.05 TCGA-BR-6452-01 2 114195463 114195463 A T CBWD2 Silent p.G6G 0.09 TCGA-BR-6452-01 2 114257141 114257141 G A FOXD4L1 Missense_Mutation p.R103Q 0.22 tolerated(0.11) benign(0.005) TCGA-BR-6452-01 2 114257269 114257269 C T FOXD4L1 Missense_Mutation p.R146C 0.06 deleterious(0.04) probably_damaging(0.953) TCGA-BR-6452-01 2 114257505 114257505 C T FOXD4L1 Silent p.H224H 0.17 TCGA-BR-6452-01 2 114257625 114257625 G A FOXD4L1 Silent p.P264P 0.25 TCGA-BR-6452-01 2 115200334 115200334 G A DPP10 5'UTR 0.13 TCGA-BR-6452-01 2 11765302 11765302 G A GREB1 Nonsense_Mutation p.W1390* 0.08 TCGA-BR-6452-01 2 118766233 118766233 A G CCDC93 Missense_Mutation p.V15A 0.08 tolerated(0.13) benign(0.411) TCGA-BR-6452-01 2 118854319 118854319 A T INSIG2 Missense_Mutation p.I63F 0.13 deleterious(0.01) possibly_damaging(0.543) TCGA-BR-6452-01 2 120012365 120012365 G A STEAP3 Missense_Mutation p.V386M 0.11 deleterious(0) possibly_damaging(0.793) TCGA-BR-6452-01 2 120194588 120194588 C T TMEM37 Missense_Mutation p.H49Y 0.06 tolerated(0.23) benign(0.003) TCGA-BR-6452-01 2 121104185 121104185 T C INHBB Missense_Mutation p.S141P 0.35 deleterious(0.04) benign(0.037) TCGA-BR-6452-01 2 121106966 121106966 A G INHBB Missense_Mutation p.N247S 0.09 tolerated(0.89) benign(0.074) TCGA-BR-6452-01 2 121712859 121712859 C T GLI2 Missense_Mutation p.L166F 0.08 deleterious(0.04) benign(0.016) TCGA-BR-6452-01 2 125530570 125530570 C T CNTNAP5 Nonsense_Mutation p.Q909* 0.19 TCGA-BR-6452-01 2 128253655 128253655 C G IWS1 Silent p.R545R 0.09 TCGA-BR-6452-01 2 128366286 128366286 C T MYO7B Missense_Mutation p.P883S 0.09 tolerated(0.67) benign(0.007) TCGA-BR-6452-01 2 128412420 128412420 C T LIMS2 Silent p.P98P 0.24 TCGA-BR-6452-01 2 12863637 12863637 G A TRIB2 Silent p.R174R 0.09 TCGA-BR-6452-01 2 128767876 128767876 G A SAP130 Missense_Mutation p.T305M 0.12 deleterious_low_confidence(0.01) probably_damaging(0.983) TCGA-BR-6452-01 2 130832934 130832934 T A POTEF Missense_Mutation p.D704V 0.23 deleterious_low_confidence(0.01) probably_damaging(0.985) TCGA-BR-6452-01 2 130868151 130868151 C T POTEF Silent p.T340T 0.14 TCGA-BR-6452-01 2 131520350 131520350 T G AMER3 Missense_Mutation p.C235W 0.16 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 2 133174728 133174728 T C GPR39 Missense_Mutation p.L38P 0.11 tolerated(0.15) benign(0.205) TCGA-BR-6452-01 2 135095865 135095865 T C MGAT5 Silent p.S227S 0.08 TCGA-BR-6452-01 2 135711759 135711759 G A CCNT2 Silent p.S578S 0.12 TCGA-BR-6452-01 2 136389319 136389319 G T R3HDM1 Nonsense_Mutation p.E177* 0.14 TCGA-BR-6452-01 2 136437848 136437848 C T R3HDM1 Missense_Mutation p.P770S 0.09 deleterious(0.01) possibly_damaging(0.715) TCGA-BR-6452-01 2 139308136 139308136 T C SPOPL Silent p.S54S 0.28 TCGA-BR-6452-01 2 139429149 139429149 G A NXPH2 Silent p.N46N 0.08 TCGA-BR-6452-01 2 140990805 140990805 C A LRP1B Nonsense_Mutation p.E4584* 0.15 TCGA-BR-6452-01 2 141665468 141665468 G A LRP1B Silent p.G1166G 0.08 TCGA-BR-6452-01 2 1437321 1437321 A G TPO Silent p.S97S 0.24 TCGA-BR-6452-01 2 144244959 144244959 A T ARHGAP15 Missense_Mutation p.S241C 0.08 deleterious(0.03) probably_damaging(0.987) TCGA-BR-6452-01 2 145156756 145156756 G A ZEB2 Silent p.N666N 0.23 TCGA-BR-6452-01 2 145157213 145157213 G A ZEB2 Missense_Mutation p.P514L 0.28 tolerated(0.05) probably_damaging(0.999) TCGA-BR-6452-01 2 149247137 149247137 C T MBD5 Silent p.G1079G 0.09 TCGA-BR-6452-01 2 151326555 151326555 C T RND3 Silent p.S227S 0.08 TCGA-BR-6452-01 2 151331469 151331469 G - RND3 Frame_Shift_Del p.L90Sfs*10 0.09 TCGA-BR-6452-01 2 152326345 152326345 A - RIF1 Frame_Shift_Del p.K2356Rfs*11 0.21 TCGA-BR-6452-01 2 152330503 152330503 T C RIF1 Missense_Mutation p.I2374T 0.09 tolerated(0.07) possibly_damaging(0.73) TCGA-BR-6452-01 2 152342334 152342334 G A NEB Silent p.G8506G 0.06 TCGA-BR-6452-01 2 152382735 152382735 G A NEB Silent p.C7329C 0.13 TCGA-BR-6452-01 2 152410411 152410411 G A NEB Silent p.H6519H 0.20 TCGA-BR-6452-01 2 152472522 152472522 A G NEB Silent p.A3761A 0.14 TCGA-BR-6452-01 2 152497096 152497096 A T NEB Missense_Mutation p.S2820T 0.09 possibly_damaging(0.885) TCGA-BR-6452-01 2 152506866 152506866 G T NEB Missense_Mutation p.L2419M 0.07 probably_damaging(0.91) TCGA-BR-6452-01 2 152522612 152522613 - A NEB Frame_Shift_Ins p.Q1675Sfs*3 0.17 TCGA-BR-6452-01 2 152522861 152522861 T C NEB Missense_Mutation p.S1592G 0.07 probably_damaging(0.993) TCGA-BR-6452-01 2 152536326 152536326 T C NEB Missense_Mutation p.D1055G 0.09 benign(0.054) TCGA-BR-6452-01 2 152553966 152553966 T - NEB Frame_Shift_Del p.K421Nfs*7 0.08 TCGA-BR-6452-01 2 153378496 153378496 C T FMNL2 Missense_Mutation p.R53W 0.16 probably_damaging(0.981) TCGA-BR-6452-01 2 153475388 153475388 T C FMNL2 Missense_Mutation p.V448A 0.10 benign(0.113) TCGA-BR-6452-01 2 154334890 154334890 C T RPRM Missense_Mutation p.V64M 0.17 deleterious(0) probably_damaging(0.938) TCGA-BR-6452-01 2 155711679 155711679 A - KCNJ3 Frame_Shift_Del p.T455Pfs*9 0.10 TCGA-BR-6452-01 2 157186496 157186496 C A NR4A2 Missense_Mutation p.S68I 0.24 deleterious(0.01) benign(0.172) TCGA-BR-6452-01 2 157369851 157369851 G A GPD2 Nonsense_Mutation p.W168* 0.09 TCGA-BR-6452-01 2 157425912 157425912 T A GPD2 Missense_Mutation p.D446E 0.10 tolerated(1) benign(0.005) TCGA-BR-6452-01 2 158971666 158971666 G A UPP2 Missense_Mutation p.M135I 0.07 tolerated(0.97) benign(0.011) TCGA-BR-6452-01 2 159660836 159660836 G A DAPL1 Missense_Mutation p.G34D 0.16 deleterious(0) probably_damaging(0.911) TCGA-BR-6452-01 2 160050845 160050845 C T TANC1 Silent p.C940C 0.22 TCGA-BR-6452-01 2 160050927 160050927 G A TANC1 Missense_Mutation p.G968S 0.08 deleterious(0) probably_damaging(0.992) TCGA-BR-6452-01 2 160289417 160289417 G A BAZ2B Missense_Mutation p.A584V 0.10 benign(0) TCGA-BR-6452-01 2 162087958 162087958 G A TANK Missense_Mutation p.D333N 0.09 tolerated(0.17) benign(0.021) TCGA-BR-6452-01 2 162092113 162092113 T C TANK 3'UTR 0.24 TCGA-BR-6452-01 2 162661031 162661031 G A SLC4A10 Missense_Mutation p.R68H 0.28 tolerated(1) benign(0.002) TCGA-BR-6452-01 2 164466724 164466724 C T FIGN Missense_Mutation p.A540T 0.16 deleterious(0) probably_damaging(0.998) TCGA-BR-6452-01 2 1652960 1652960 G - PXDN Frame_Shift_Del p.N865Mfs*25 0.29 TCGA-BR-6452-01 2 165551250 165551250 A G COBLL1 Silent p.A922A 0.11 TCGA-BR-6452-01 2 165768194 165768194 A G SLC38A11 Silent p.G249G 0.16 TCGA-BR-6452-01 2 165950924 165950924 A T SCN3A Missense_Mutation p.L1499H 0.05 deleterious(0) probably_damaging(0.924) TCGA-BR-6452-01 2 165997314 165997314 G A SCN3A Silent p.N622N 0.11 TCGA-BR-6452-01 2 166011130 166011130 A - SCN3A Frame_Shift_Del p.F404Lfs*13 0.24 TCGA-BR-6452-01 2 166168564 166168564 G A SCN2A Missense_Mutation p.D334N 0.15 deleterious(0.04) benign(0.113) TCGA-BR-6452-01 2 166231207 166231207 G A SCN2A Missense_Mutation p.A1329T 0.11 deleterious(0.03) probably_damaging(0.999) TCGA-BR-6452-01 2 166786211 166786211 A T TTC21B Missense_Mutation p.D378E 0.08 tolerated(1) benign(0.001) TCGA-BR-6452-01 2 166848920 166848920 G A SCN1A Missense_Mutation p.A1622V 0.14 deleterious(0) probably_damaging(0.984) TCGA-BR-6452-01 2 167133605 167133605 A T SCN9A Missense_Mutation p.F910Y 0.08 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 2 168104512 168104512 A G XIRP2 Missense_Mutation p.I2204V 0.11 benign(0.002) TCGA-BR-6452-01 2 169313062 169313062 C T CERS6 Missense_Mutation p.A35V 0.10 tolerated(0.17) probably_damaging(0.993) TCGA-BR-6452-01 2 169699539 169699539 A - NOSTRIN Frame_Shift_Del p.K182Rfs*18 0.20 TCGA-BR-6452-01 2 169792759 169792759 G A ABCB11 Missense_Mutation p.A932V 0.12 tolerated(0.16) benign(0.11) TCGA-BR-6452-01 2 169939959 169939959 C G DHRS9 Missense_Mutation p.T145R 0.10 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 2 170012784 170012784 C A LRP2 Missense_Mutation p.G4051C 0.10 probably_damaging(0.971) TCGA-BR-6452-01 2 170034315 170034315 A G LRP2 Missense_Mutation p.I3464T 0.09 benign(0.104) TCGA-BR-6452-01 2 170066149 170066149 G A LRP2 Nonsense_Mutation p.R2095* 0.14 TCGA-BR-6452-01 2 170097855 170097855 A G LRP2 Missense_Mutation p.C1230R 0.07 probably_damaging(1) TCGA-BR-6452-01 2 170115570 170115570 A C LRP2 Missense_Mutation p.N826K 0.06 benign(0.354) TCGA-BR-6452-01 2 170135946 170135946 G A LRP2 Missense_Mutation p.R501W 0.17 probably_damaging(0.999) TCGA-BR-6452-01 2 170489776 170489776 A G PPIG Intron 0.11 TCGA-BR-6452-01 2 170936326 170936326 C A UBR3 Silent p.A1734A 0.22 TCGA-BR-6452-01 2 171256774 171256774 A G MYO3B Missense_Mutation p.Q623R 0.25 deleterious(0.02) benign(0.065) TCGA-BR-6452-01 2 171906571 171906571 T C TLK1 Intron 0.15 TCGA-BR-6452-01 2 172330389 172330389 T A DCAF17 Missense_Mutation p.I332N 0.13 deleterious(0) possibly_damaging(0.857) TCGA-BR-6452-01 2 173457701 173457701 C T PDK1 Silent p.Y365Y 0.22 TCGA-BR-6452-01 2 173891823 173891823 T A RAPGEF4 Nonsense_Mutation p.Y798* 0.11 TCGA-BR-6452-01 2 174130855 174130855 A G MLTK Missense_Mutation p.N594D 0.21 tolerated_low_confidence(0.46) benign(0.08) TCGA-BR-6452-01 2 174131092 174131092 T A MLTK Missense_Mutation p.Y673N 0.10 tolerated_low_confidence(0.23) benign(0.154) TCGA-BR-6452-01 2 174229673 174229673 T C CDCA7 Missense_Mutation p.Y284H 0.14 deleterious(0.05) possibly_damaging(0.771) TCGA-BR-6452-01 2 175246441 175246441 C A CIR1 Missense_Mutation p.A78S 0.05 tolerated(0.09) unknown(0) TCGA-BR-6452-01 2 175326315 175326315 C - GPR155 Splice_Site p.X490_splice 0.18 TCGA-BR-6452-01 2 176046086 176046086 A T ATP5G3 Silent p.S12S 0.21 TCGA-BR-6452-01 2 17697217 17697217 A G RAD51AP2 Silent p.S822S 0.08 TCGA-BR-6452-01 2 177054889 177054889 A - HOXD1 3'UTR 0.33 TCGA-BR-6452-01 2 177202275 177202275 A G MTX2 Silent p.T225T 0.08 TCGA-BR-6452-01 2 178415951 178415951 T C TTC30B Missense_Mutation p.N514S 0.08 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 2 178416839 178416839 C T TTC30B Missense_Mutation p.G218D 0.08 deleterious(0) probably_damaging(0.992) TCGA-BR-6452-01 2 17864968 17864968 T - SMC6 Frame_Shift_Del p.K914Sfs*24 0.10 TCGA-BR-6452-01 2 17898096 17898096 A G SMC6 Missense_Mutation p.F420L 0.08 tolerated(1) benign(0.001) TCGA-BR-6452-01 2 179201135 179201135 G A OSBPL6 Silent p.S255S 0.10 TCGA-BR-6452-01 2 179325710 179325710 T C DFNB59 Silent p.N256N 0.08 TCGA-BR-6452-01 2 179334426 179334426 A T FKBP7 Missense_Mutation p.F154I 0.09 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 2 179343217 179343217 T - FKBP7 Frame_Shift_Del p.T4Pfs*32 0.11 TCGA-BR-6452-01 2 179395728 179395728 T C TTN Missense_Mutation p.N35205S 0.05 TCGA-BR-6452-01 2 179402473 179402473 C T TTN Missense_Mutation p.R33154H 0.08 TCGA-BR-6452-01 2 179412969 179412969 G T TTN Silent p.S31128S 0.09 TCGA-BR-6452-01 2 179414486 179414486 A G TTN Missense_Mutation p.Y30655H 0.25 TCGA-BR-6452-01 2 179414849 179414849 A G TTN Silent p.N30572N 0.11 TCGA-BR-6452-01 2 179414978 179414978 G A TTN Silent p.G30529G 0.10 TCGA-BR-6452-01 2 179415883 179415883 T C TTN Missense_Mutation p.I30459V 0.16 TCGA-BR-6452-01 2 179418786 179418786 T C TTN Silent p.L29684L 0.06 TCGA-BR-6452-01 2 179425685 179425685 C T TTN Missense_Mutation p.A28392T 0.08 TCGA-BR-6452-01 2 179429031 179429031 A C TTN Silent p.S27276S 0.10 TCGA-BR-6452-01 2 179437140 179437140 G A TTN Silent p.C24573C 0.09 TCGA-BR-6452-01 2 179437289 179437289 G A TTN Nonsense_Mutation p.Q24524* 0.08 TCGA-BR-6452-01 2 179442036 179442036 T C TTN Missense_Mutation p.Y23009C 0.12 TCGA-BR-6452-01 2 179456053 179456053 T C TTN Silent p.S20133S 0.11 TCGA-BR-6452-01 2 179457902 179457902 A G TTN Missense_Mutation p.I19678T 0.09 TCGA-BR-6452-01 2 179462392 179462392 A G TTN Silent p.I19139I 0.10 TCGA-BR-6452-01 2 179463262 179463262 T C TTN Missense_Mutation p.K19028E 0.16 TCGA-BR-6452-01 2 179463329 179463329 T C TTN Silent p.A19005A 0.09 TCGA-BR-6452-01 2 179464134 179464134 A G TTN Missense_Mutation p.S18796P 0.17 TCGA-BR-6452-01 2 179469685 179469685 T G TTN Intron 0.24 TCGA-BR-6452-01 2 179495656 179495656 G A TTN Silent p.L14677L 0.28 TCGA-BR-6452-01 2 179517022 179517022 A G TTN Silent p.P13060P 0.07 TCGA-BR-6452-01 2 179527715 179527716 - T TTN Frame_Shift_Ins p.P12257Afs*7 0.12 TCGA-BR-6452-01 2 179544994 179544994 T C TTN Silent p.A11135A 0.07 TCGA-BR-6452-01 2 179547450 179547450 T G TTN Missense_Mutation p.Y11023S 0.07 TCGA-BR-6452-01 2 179554557 179554557 T C TTN Missense_Mutation p.E10610G 0.06 TCGA-BR-6452-01 2 179571293 179571293 G A TTN Nonsense_Mutation p.R9770* 0.23 TCGA-BR-6452-01 2 179577959 179577959 T C TTN Missense_Mutation p.S8968G 0.08 TCGA-BR-6452-01 2 179578862 179578862 A T TTN Silent p.V8841V 0.11 TCGA-BR-6452-01 2 179578874 179578874 T C TTN Silent p.E8837E 0.26 TCGA-BR-6452-01 2 179589031 179589031 T G TTN Missense_Mutation p.N7024T 0.13 TCGA-BR-6452-01 2 179592343 179592343 G A TTN Silent p.S6654S 0.06 TCGA-BR-6452-01 2 179594254 179594254 A G TTN Missense_Mutation p.V6210A 0.15 TCGA-BR-6452-01 2 179597786 179597786 T C TTN Missense_Mutation p.T5373A 0.16 TCGA-BR-6452-01 2 179600589 179600589 T C TTN Missense_Mutation p.R4862G 0.10 TCGA-BR-6452-01 2 179616245 179616245 C A TTN Intron 0.06 TCGA-BR-6452-01 2 179621295 179621295 T C TTN Silent p.A3636A 0.09 TCGA-BR-6452-01 2 17962934 17962934 A G GEN1 Missense_Mutation p.R819G 0.22 deleterious(0.01) benign(0.021) TCGA-BR-6452-01 2 179641788 179641789 - G TTN Intron 0.08 TCGA-BR-6452-01 2 179642221 179642221 T A TTN Missense_Mutation p.D1524V 0.10 TCGA-BR-6452-01 2 179710386 179710387 - TT CCDC141 Frame_Shift_Ins p.N1147Kfs*36 0.17 TCGA-BR-6452-01 2 179730575 179730575 C T CCDC141 Silent p.K881K 0.08 TCGA-BR-6452-01 2 179982318 179982318 G A SESTD1 Nonsense_Mutation p.R489* 0.19 TCGA-BR-6452-01 2 18112978 18112978 G A KCNS3 Missense_Mutation p.G235R 0.25 tolerated(0.08) benign(0.078) TCGA-BR-6452-01 2 182394352 182394352 C T ITGA4 Silent p.L839L 0.14 TCGA-BR-6452-01 2 182412405 182412405 C T CERKL Missense_Mutation p.S429N 0.12 tolerated(0.62) benign(0.167) TCGA-BR-6452-01 2 182543447 182543447 G A NEUROD1 Silent p.N47N 0.25 TCGA-BR-6452-01 2 183094743 183094743 G A PDE1A Missense_Mutation p.T238I 0.20 deleterious(0.02) probably_damaging(0.988) TCGA-BR-6452-01 2 183848065 183848065 C T NCKAP1 Silent p.L356L 0.09 TCGA-BR-6452-01 2 185800760 185800760 G A ZNF804A Missense_Mutation p.G213S 0.09 deleterious(0.04) probably_damaging(0.998) TCGA-BR-6452-01 2 186670650 186670650 T A FSIP2 Silent p.V5628V 0.09 TCGA-BR-6452-01 2 186671431 186671431 T C FSIP2 Missense_Mutation p.F5889L 0.09 probably_damaging(0.991) TCGA-BR-6452-01 2 187693278 187693278 A G ZSWIM2 Silent p.P445P 0.10 TCGA-BR-6452-01 2 189933518 189933518 A G COL5A2 Silent p.G417G 0.11 TCGA-BR-6452-01 2 189948739 189948739 G A COL5A2 Missense_Mutation p.P275S 0.09 benign(0.058) TCGA-BR-6452-01 2 190340178 190340178 T - WDR75 3'UTR 0.29 TCGA-BR-6452-01 2 190927217 190927218 - T MSTN Frame_Shift_Ins p.E36Rfs*5 0.21 TCGA-BR-6452-01 2 190927276 190927276 A G MSTN Missense_Mutation p.I16T 0.08 tolerated_low_confidence(0.06) benign(0.004) TCGA-BR-6452-01 2 191524184 191524184 A G NAB1 Missense_Mutation p.I94M 0.08 deleterious(0) probably_damaging(0.965) TCGA-BR-6452-01 2 191796330 191796330 A T GLS Missense_Mutation p.K539N 0.09 deleterious(0.03) probably_damaging(0.975) TCGA-BR-6452-01 2 191819388 191819388 T C GLS Splice_Site p.X597_splice 0.11 TCGA-BR-6452-01 2 191863025 191863025 G A STAT1 Missense_Mutation p.T184I 0.18 tolerated(0.45) benign(0.005) TCGA-BR-6452-01 2 191937856 191937856 G A STAT4 Missense_Mutation p.H145Y 0.11 tolerated(0.34) benign(0.021) TCGA-BR-6452-01 2 192011389 192011389 T C STAT4 Missense_Mutation p.K75E 0.09 tolerated(0.6) benign(0.096) TCGA-BR-6452-01 2 192255027 192255027 A C MYO1B Missense_Mutation p.K597N 0.08 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 2 192700777 192700777 A T SDPR Missense_Mutation p.S384T 0.09 tolerated_low_confidence(0.33) benign(0.075) TCGA-BR-6452-01 2 196883924 196883924 G A DNAH7 Missense_Mutation p.A280V 0.08 tolerated(0.27) benign(0.04) TCGA-BR-6452-01 2 197004488 197004488 T C STK17B Missense_Mutation p.H231R 0.07 deleterious(0) benign(0.124) TCGA-BR-6452-01 2 197010665 197010665 A C STK17B Missense_Mutation p.H150Q 0.10 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 2 197080627 197080627 G A HECW2 Silent p.F1523F 0.09 TCGA-BR-6452-01 2 197559769 197559769 G T CCDC150 Splice_Site p.X504_splice 0.10 TCGA-BR-6452-01 2 197584353 197584353 C T CCDC150 Missense_Mutation p.R710W 0.26 deleterious(0) probably_damaging(0.927) TCGA-BR-6452-01 2 197634713 197634713 A C GTF3C3 Missense_Mutation p.F771V 0.10 deleterious(0.01) benign(0.001) TCGA-BR-6452-01 2 197634743 197634743 G A GTF3C3 Missense_Mutation p.R761C 0.16 deleterious(0) benign(0.072) TCGA-BR-6452-01 2 197767343 197767343 T C PGAP1 Missense_Mutation p.K258R 0.10 tolerated(0.82) benign(0.005) TCGA-BR-6452-01 2 197878384 197878384 T C HNRNPA3P15 5'Flank 0.06 TCGA-BR-6452-01 2 197948166 197948166 C - ANKRD44 Frame_Shift_Del p.A437Pfs*29 0.11 TCGA-BR-6452-01 2 201436289 201436289 A - SGOL2 Frame_Shift_Del p.K409Rfs*52 0.20 TCGA-BR-6452-01 2 201501681 201501681 C - AOX1 Frame_Shift_Del p.H799Mfs*2 0.10 TCGA-BR-6452-01 2 201685984 201685984 A C BZW1 Missense_Mutation p.E427A 0.12 deleterious(0.01) possibly_damaging(0.685) TCGA-BR-6452-01 2 202050789 202050789 T C CASP10 Missense_Mutation p.C97R 0.11 deleterious(0) benign(0.004) TCGA-BR-6452-01 2 202285276 202285276 A T TRAK2 5'UTR 0.19 TCGA-BR-6452-01 2 202588154 202588154 A G ALS2 Missense_Mutation p.Y1175H 0.07 deleterious(0.02) probably_damaging(0.996) TCGA-BR-6452-01 2 203160406 203160406 T C NOP58 Missense_Mutation p.L306S 0.07 deleterious(0) possibly_damaging(0.589) TCGA-BR-6452-01 2 203693595 203693595 A G ICA1L Silent p.D46D 0.10 TCGA-BR-6452-01 2 204305854 204305854 G A RAPH1 Missense_Mutation p.P687S 0.11 possibly_damaging(0.61) TCGA-BR-6452-01 2 204309652 204309652 A C RAPH1 Missense_Mutation p.I572S 0.06 benign(0.079) TCGA-BR-6452-01 2 20451433 20451433 C T PUM2 Silent p.K1036K 0.07 TCGA-BR-6452-01 2 207011675 207011675 G A NDUFS1 Missense_Mutation p.A244V 0.11 deleterious(0) probably_damaging(0.998) TCGA-BR-6452-01 2 207173626 207173626 T G ZDBF2 Silent p.S1458S 0.08 TCGA-BR-6452-01 2 207174279 207174279 C T ZDBF2 Missense_Mutation p.T1676M 0.15 tolerated(0.24) benign(0.074) TCGA-BR-6452-01 2 207825666 207825666 A G CPO Missense_Mutation p.S192G 0.06 tolerated(0.13) benign(0.006) TCGA-BR-6452-01 2 208432253 208432253 C T CREB1 Nonsense_Mutation p.R124* 0.20 TCGA-BR-6452-01 2 208841586 208841586 C A PLEKHM3 Missense_Mutation p.Q445H 0.12 tolerated(0.11) possibly_damaging(0.661) TCGA-BR-6452-01 2 208993087 208993087 C T CRYGC Missense_Mutation p.R122H 0.12 tolerated(1) benign(0.002) TCGA-BR-6452-01 2 209307125 209307125 G A PTH2R Missense_Mutation p.V150I 0.09 tolerated(0.36) benign(0.02) TCGA-BR-6452-01 2 209353840 209353840 C T PTH2R Missense_Mutation p.R394C 0.10 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 2 209353869 209353869 C T PTH2R Silent p.S403S 0.10 TCGA-BR-6452-01 2 210560092 210560092 G T MAP2 Missense_Mutation p.R1066S 0.18 deleterious_low_confidence(0.02) benign(0.045) TCGA-BR-6452-01 2 210561667 210561667 A - MAP2 Frame_Shift_Del p.T1474Qfs*14 0.31 TCGA-BR-6452-01 2 210892042 210892042 T C KANSL1L Missense_Mutation p.E810G 0.09 tolerated(0.16) benign(0.138) TCGA-BR-6452-01 2 211319880 211319880 G A LANCL1 Silent p.L120L 0.12 TCGA-BR-6452-01 2 21224949 21224949 G T APOB Missense_Mutation p.Q4449K 0.29 benign(0.057) TCGA-BR-6452-01 2 212293210 212293210 T A ERBB4 Splice_Site p.X882_splice 0.10 TCGA-BR-6452-01 2 21252548 21252548 G A APOB Missense_Mutation p.A527V 0.20 probably_damaging(0.998) TCGA-BR-6452-01 2 212570080 212570080 C A ERBB4 Missense_Mutation p.E387D 0.06 tolerated(0.09) benign(0.003) TCGA-BR-6452-01 2 213914553 213914553 C T IKZF2 Missense_Mutation p.G153D 0.18 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 2 215275016 215275016 G A SPAG16 Missense_Mutation p.G625S 0.07 tolerated(0.11) probably_damaging(0.999) TCGA-BR-6452-01 2 215645635 215645635 T - BARD1 Frame_Shift_Del p.K321Nfs*21 0.15 TCGA-BR-6452-01 2 215833442 215833442 A G ABCA12 Splice_Site p.X1926_splice 0.07 TCGA-BR-6452-01 2 215847077 215847077 A T ABCA12 Missense_Mutation p.H1471Q 0.08 deleterious(0) possibly_damaging(0.772) TCGA-BR-6452-01 2 215855563 215855563 A G ABCA12 Missense_Mutation p.Y1163H 0.09 deleterious(0) probably_damaging(0.983) TCGA-BR-6452-01 2 215855685 215855685 A - ABCA12 Frame_Shift_Del p.L1122Yfs*6 0.12 TCGA-BR-6452-01 2 215901775 215901775 A G ABCA12 Missense_Mutation p.V296A 0.09 tolerated(0.39) benign(0) TCGA-BR-6452-01 2 215928846 215928846 T C ABCA12 Missense_Mutation p.Y87C 0.09 deleterious(0) probably_damaging(0.998) TCGA-BR-6452-01 2 216211630 216211630 C T ATIC Missense_Mutation p.A490V 0.12 deleterious(0.04) benign(0.078) TCGA-BR-6452-01 2 216269191 216269191 A G FN1 Silent p.P1058P 0.08 TCGA-BR-6452-01 2 216272839 216272839 G A FN1 Missense_Mutation p.P837L 0.19 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 2 216300512 216300512 G A FN1 Missense_Mutation p.P5L 0.33 deleterious(0) unknown(0) TCGA-BR-6452-01 2 216810365 216810365 A G MREG Silent p.L147L 0.07 TCGA-BR-6452-01 2 216981555 216981555 A G XRCC5 Silent p.Q103Q 0.23 TCGA-BR-6452-01 2 217280157 217280157 A G SMARCAL1 Missense_Mutation p.N244D 0.08 tolerated(0.53) benign(0.001) TCGA-BR-6452-01 2 218669296 218669296 G A TNS1 Silent p.G1698G 0.25 TCGA-BR-6452-01 2 218712549 218712549 C T TNS1 Silent p.S772S 0.29 TCGA-BR-6452-01 2 218999581 218999581 T A CXCR2 Missense_Mutation p.D19E 0.16 tolerated(0.4) benign(0.003) TCGA-BR-6452-01 2 219000013 219000013 A C CXCR2 Missense_Mutation p.K163N 0.08 deleterious(0.03) probably_damaging(0.998) TCGA-BR-6452-01 2 219029676 219029676 G T CXCR1 Missense_Mutation p.L87I 0.08 deleterious(0.01) possibly_damaging(0.764) TCGA-BR-6452-01 2 219209631 219209631 G T PNKD Missense_Mutation p.G362V 0.18 tolerated(0.08) possibly_damaging(0.551) TCGA-BR-6452-01 2 219267084 219267084 G A CTDSP1 Missense_Mutation p.A112T 0.09 deleterious(0.03) benign(0.231) TCGA-BR-6452-01 2 219350422 219350422 A T USP37 Nonsense_Mutation p.C545* 0.26 TCGA-BR-6452-01 2 219411702 219411702 C T USP37 Missense_Mutation p.R181Q 0.10 tolerated(0.91) benign(0.301) TCGA-BR-6452-01 2 219508288 219508288 A T ZNF142 Missense_Mutation p.V984D 0.08 tolerated(0.59) possibly_damaging(0.485) TCGA-BR-6452-01 2 219528796 219528796 G T RNF25 Missense_Mutation p.R422S 0.13 deleterious(0) possibly_damaging(0.66) TCGA-BR-6452-01 2 219528942 219528942 G A RNF25 Missense_Mutation p.P373L 0.16 tolerated(0.19) benign(0.014) TCGA-BR-6452-01 2 219603528 219603528 A G TTLL4 Missense_Mutation p.R377G 0.22 tolerated(0.44) benign(0.004) TCGA-BR-6452-01 2 219869020 219869020 T C CCDC108 Missense_Mutation p.S1737G 0.08 tolerated(0.43) benign(0.006) TCGA-BR-6452-01 2 220046854 220046854 T C FAM134A Missense_Mutation p.S379P 0.13 tolerated(0.08) possibly_damaging(0.881) TCGA-BR-6452-01 2 220083094 220083095 - C ABCB6 Frame_Shift_Ins p.A101Gfs*61 0.29 TCGA-BR-6452-01 2 220136311 220136312 - C TUBA4B RNA 0.13 TCGA-BR-6452-01 2 220149476 220149476 G A DNAJB2 Missense_Mutation p.D248N 0.22 tolerated(0.08) benign(0.098) TCGA-BR-6452-01 2 220166975 220166976 - C PTPRN Frame_Shift_Ins p.V293Gfs*21 0.33 TCGA-BR-6452-01 2 220349088 220349088 G A SPEG Silent p.P2301P 0.23 TCGA-BR-6452-01 2 220354263 220354263 A G SPEG Silent p.P2841P 0.13 TCGA-BR-6452-01 2 220357350 220357350 C A SPEG Missense_Mutation p.P3216T 0.10 possibly_damaging(0.639) TCGA-BR-6452-01 2 220366625 220366625 C T GMPPA Nonsense_Mutation p.R99* 0.21 TCGA-BR-6452-01 2 222290668 222290668 A - EPHA4 3'UTR 0.30 TCGA-BR-6452-01 2 222310897 222310897 T C EPHA4 Missense_Mutation p.S574G 0.11 tolerated(0.41) possibly_damaging(0.827) TCGA-BR-6452-01 2 222347160 222347160 G T EPHA4 Silent p.T410T 0.08 TCGA-BR-6452-01 2 222347301 222347301 A G EPHA4 Silent p.N363N 0.06 TCGA-BR-6452-01 2 224863058 224863058 T C SERPINE2 Silent p.G99G 0.13 TCGA-BR-6452-01 2 225630541 225630541 T C DOCK10 Missense_Mutation p.D2153G 0.17 deleterious(0.02) benign(0.031) TCGA-BR-6452-01 2 226447576 226447576 G A NYAP2 Silent p.S481S 0.31 TCGA-BR-6452-01 2 227660190 227660190 G A IRS1 Missense_Mutation p.R1089C 0.08 deleterious(0) probably_damaging(0.995) TCGA-BR-6452-01 2 227732001 227732001 T A RHBDD1 Missense_Mutation p.V178D 0.07 deleterious(0) possibly_damaging(0.555) TCGA-BR-6452-01 2 227919385 227919385 G A COL4A4 Missense_Mutation p.P929S 0.12 unknown(0) TCGA-BR-6452-01 2 228220472 228220472 C T MFF Nonsense_Mutation p.R298* 0.09 TCGA-BR-6452-01 2 228680264 228680264 C A CCL20 Silent p.G57G 0.11 TCGA-BR-6452-01 2 228884736 228884736 T C SPHKAP Silent p.T278T 0.06 TCGA-BR-6452-01 2 230910760 230910760 A G SLC16A14 Missense_Mutation p.I361T 0.13 deleterious(0) probably_damaging(0.975) TCGA-BR-6452-01 2 230923905 230923905 C T SLC16A14 Missense_Mutation p.G55D 0.10 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 2 231036441 231036441 T C SP110 Missense_Mutation p.S620G 0.16 tolerated(0.05) benign(0.294) TCGA-BR-6452-01 2 231042316 231042316 T C SP110 Missense_Mutation p.N510D 0.07 tolerated(0.26) possibly_damaging(0.486) TCGA-BR-6452-01 2 231134660 231134660 G A SP140 Missense_Mutation p.G479D 0.09 tolerated(1) benign(0.002) TCGA-BR-6452-01 2 231193506 231193506 G A SP140L Missense_Mutation p.E23K 0.11 deleterious_low_confidence(0.05) possibly_damaging(0.486) TCGA-BR-6452-01 2 231266379 231266379 A G SP140L Missense_Mutation p.I501V 0.07 tolerated(0.28) benign(0.09) TCGA-BR-6452-01 2 231988258 231988258 A G HTR2B Missense_Mutation p.L74P 0.09 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 2 232325554 232325554 T A NCL Missense_Mutation p.T213S 0.07 benign(0.001) TCGA-BR-6452-01 2 233274458 233274458 C T ALPPL2 Missense_Mutation p.A492V 0.21 tolerated(0.13) benign(0.004) TCGA-BR-6452-01 2 233322832 233322832 C A ALPI Silent p.L327L 0.11 TCGA-BR-6452-01 2 233404465 233404465 G T CHRNG Missense_Mutation p.G3V 0.22 tolerated_low_confidence(0.24) benign(0.132) TCGA-BR-6452-01 2 233527580 233527580 C - EFHD1 Frame_Shift_Del p.Q126Rfs*6 0.11 TCGA-BR-6452-01 2 234359623 234359623 T C DGKD Silent p.S698S 0.11 TCGA-BR-6452-01 2 234368890 234368890 G A DGKD Silent p.L960L 0.11 TCGA-BR-6452-01 2 234621927 234621927 C T UGT1A5 Missense_Mutation p.T97I 0.12 tolerated(0.33) benign(0.003) TCGA-BR-6452-01 2 236945228 236945228 A G AGAP1 Missense_Mutation p.I557V 0.06 tolerated(0.48) benign(0.158) TCGA-BR-6452-01 2 237374169 237374169 C T IQCA1 Missense_Mutation p.R302Q 0.10 deleterious(0.03) possibly_damaging(0.777) TCGA-BR-6452-01 2 238249610 238249610 T A COL6A3 Missense_Mutation p.D2650V 0.08 unknown(0) TCGA-BR-6452-01 2 238253585 238253585 G A COL6A3 Silent p.Y2391Y 0.18 TCGA-BR-6452-01 2 238285615 238285615 T C COL6A3 Missense_Mutation p.D957G 0.18 possibly_damaging(0.792) TCGA-BR-6452-01 2 238296676 238296676 G A COL6A3 Silent p.S287S 0.23 TCGA-BR-6452-01 2 238688132 238688132 A - LRRFIP1 Frame_Shift_Del p.M629* 0.16 TCGA-BR-6452-01 2 238999895 238999895 G T SCLY Missense_Mutation p.K315N 0.07 deleterious(0.02) probably_damaging(0.949) TCGA-BR-6452-01 2 239079153 239079153 G A ILKAP 3'UTR 0.23 TCGA-BR-6452-01 2 239147830 239147830 G A HES6 Missense_Mutation p.H105Y 0.09 deleterious(0) probably_damaging(0.998) TCGA-BR-6452-01 2 24046213 24046213 C T ATAD2B Silent p.L682L 0.14 TCGA-BR-6452-01 2 240985382 240985382 G A OR6B3 Silent p.L36L 0.08 TCGA-BR-6452-01 2 241513717 241513717 G A RNPEPL1 Missense_Mutation p.E145K 0.23 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 2 241689868 241689868 G A KIF1A Silent p.R985R 0.16 TCGA-BR-6452-01 2 24194218 24194218 T A UBXN2A Missense_Mutation p.D38E 0.08 tolerated(0.45) benign(0.14) TCGA-BR-6452-01 2 241992711 241992711 A G SNED1 Missense_Mutation p.H742R 0.10 tolerated(0.2) benign(0.001) TCGA-BR-6452-01 2 242009574 242009574 G A SNED1 Missense_Mutation p.G1183R 0.23 deleterious(0.01) possibly_damaging(0.861) TCGA-BR-6452-01 2 242021174 242021174 C T SNED1 Silent p.C1333C 0.27 TCGA-BR-6452-01 2 242122098 242122098 G A PPP1R7 Missense_Mutation p.D315N 0.12 tolerated(0.1) benign(0.109) TCGA-BR-6452-01 2 242501857 242501857 G A BOK Silent p.A105A 0.17 TCGA-BR-6452-01 2 242690780 242690780 G A D2HGDH Missense_Mutation p.A373T 0.15 tolerated(0.08) benign(0.305) TCGA-BR-6452-01 2 242757513 242757513 C T NEU4 Silent p.F211F 0.14 TCGA-BR-6452-01 2 24493619 24493619 A G ITSN2 Missense_Mutation p.L759S 0.10 deleterious(0.01) unknown(0) TCGA-BR-6452-01 2 24533475 24533475 T A ITSN2 Missense_Mutation p.T147S 0.08 tolerated(0.51) benign(0.243) TCGA-BR-6452-01 2 24927967 24927967 G A NCOA1 Missense_Mutation p.G321D 0.09 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 2 25037355 25037355 T A CENPO Missense_Mutation p.H109Q 0.08 tolerated(0.21) benign(0.043) TCGA-BR-6452-01 2 25384290 25384290 C T POMC Missense_Mutation p.R155H 0.20 deleterious(0) probably_damaging(0.997) TCGA-BR-6452-01 2 25463242 25463242 A T DNMT3A Missense_Mutation p.F751I 0.11 deleterious(0) probably_damaging(0.937) TCGA-BR-6452-01 2 26437359 26437359 G A HADHA Nonsense_Mutation p.R291* 0.22 TCGA-BR-6452-01 2 26644259 26644259 A C DRC1 Missense_Mutation p.K116T 0.10 tolerated(0.07) benign(0.087) TCGA-BR-6452-01 2 26676390 26676390 C T DRC1 Missense_Mutation p.A631V 0.23 deleterious(0) possibly_damaging(0.599) TCGA-BR-6452-01 2 26686909 26686909 G - OTOF Frame_Shift_Del p.R1676Afs*87 0.23 TCGA-BR-6452-01 2 26695445 26695445 A G OTOF Missense_Mutation p.V1269A 0.16 tolerated(0.2) benign(0.297) TCGA-BR-6452-01 2 26702518 26702518 T C OTOF Missense_Mutation p.N639S 0.08 deleterious(0) possibly_damaging(0.816) TCGA-BR-6452-01 2 26741942 26741942 A G OTOF Missense_Mutation p.V88A 0.15 tolerated(0.06) probably_damaging(0.994) TCGA-BR-6452-01 2 27162933 27162933 C T DPYSL5 Missense_Mutation p.P328S 0.28 tolerated(0.09) benign(0.276) TCGA-BR-6452-01 2 27276785 27276785 T A AGBL5 Missense_Mutation p.L137I 0.11 tolerated(0.15) possibly_damaging(0.667) TCGA-BR-6452-01 2 27305786 27305786 G - EMILIN1 Frame_Shift_Del p.L452Cfs*5 0.35 TCGA-BR-6452-01 2 27449763 27449763 T A CAD Silent p.I740I 0.13 TCGA-BR-6452-01 2 27481702 27481702 T C SLC30A3 Missense_Mutation p.T66A 0.28 tolerated(0.86) benign(0.002) TCGA-BR-6452-01 2 27529138 27529138 C A TRIM54 Missense_Mutation p.S350R 0.09 tolerated(0.08) benign(0.008) TCGA-BR-6452-01 2 27560373 27560373 A G GTF3C2 Missense_Mutation p.W335R 0.15 tolerated(0.77) benign(0.008) TCGA-BR-6452-01 2 27603013 27603018 TCCTCT - ZNF513 In_Frame_Del p.E53_E54del 0.08 TCGA-BR-6452-01 2 27680796 27680796 T C IFT172 Missense_Mutation p.K1008R 0.10 tolerated(0.17) benign(0.31) TCGA-BR-6452-01 2 27682682 27682682 G A IFT172 Nonsense_Mutation p.R846* 0.23 TCGA-BR-6452-01 2 27703943 27703943 C - IFT172 Frame_Shift_Del p.G252Afs*6 0.25 TCGA-BR-6452-01 2 27800214 27800214 A G C2orf16 Missense_Mutation p.T259A 0.07 tolerated(0.59) benign(0.025) TCGA-BR-6452-01 2 28739692 28739692 A G PLB1 Missense_Mutation p.T25A 0.10 tolerated_low_confidence(0.33) benign(0.002) TCGA-BR-6452-01 2 29072887 29072887 T C TRMT61B 3'UTR 0.27 TCGA-BR-6452-01 2 29287753 29287753 C A C2orf71 Missense_Mutation p.Q1283H 0.13 deleterious(0.01) probably_damaging(0.986) TCGA-BR-6452-01 2 29386758 29386758 T C CLIP4 Silent p.G532G 0.09 TCGA-BR-6452-01 2 30381637 30381637 C T YPEL5 Silent p.R98R 0.07 TCGA-BR-6452-01 2 30682536 30682536 G A LCLAT1 Missense_Mutation p.A20T 0.11 deleterious_low_confidence(0) possibly_damaging(0.483) TCGA-BR-6452-01 2 31489241 31489241 G T EHD3 Missense_Mutation p.G427W 0.09 deleterious(0.02) possibly_damaging(0.871) TCGA-BR-6452-01 2 31558790 31558790 G A XDH 3'UTR 0.10 TCGA-BR-6452-01 2 31588888 31588888 T C XDH Missense_Mutation p.T804A 0.07 tolerated(0.07) benign(0.303) TCGA-BR-6452-01 2 32417985 32417985 A G SLC30A6 Splice_Site p.X162_splice 0.08 TCGA-BR-6452-01 2 32476209 32476209 T G NLRC4 Silent p.R242R 0.07 TCGA-BR-6452-01 2 32694625 32694625 C T BIRC6 Missense_Mutation p.S2097F 0.05 probably_damaging(0.915) TCGA-BR-6452-01 2 32859010 32859010 C - TTC27 Frame_Shift_Del p.P113Lfs*29 0.12 TCGA-BR-6452-01 2 33036137 33036137 G A TTC27 Missense_Mutation p.R682Q 0.09 tolerated(0.3) benign(0.18) TCGA-BR-6452-01 2 33810274 33810274 C T FAM98A Missense_Mutation p.G376R 0.31 tolerated(0.28) unknown(0) TCGA-BR-6452-01 2 3392316 3392316 G A TRAPPC12 Missense_Mutation p.D308N 0.21 tolerated(0.06) possibly_damaging(0.885) TCGA-BR-6452-01 2 3627805 3627805 A T RPS7 Silent p.I154I 0.12 TCGA-BR-6452-01 2 36764546 36764546 C T CRIM1 Missense_Mutation p.A827V 0.10 tolerated(0.37) probably_damaging(0.992) TCGA-BR-6452-01 2 36982084 36982084 G A VIT Missense_Mutation p.G99E 0.22 deleterious(0) probably_damaging(0.947) TCGA-BR-6452-01 2 37255304 37255304 T C HEATR5B Silent p.A1205A 0.11 TCGA-BR-6452-01 2 37255956 37255956 G A HEATR5B Silent p.L1157L 0.08 TCGA-BR-6452-01 2 37402358 37402358 T G SULT6B1 Silent p.R143R 0.19 TCGA-BR-6452-01 2 3743888 3743888 G A ALLC Missense_Mutation p.A231T 0.09 deleterious(0.03) benign(0.367) TCGA-BR-6452-01 2 37442030 37442030 T C CEBPZ Missense_Mutation p.R816G 0.08 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 2 37454697 37454697 C T CEBPZ Missense_Mutation p.A547T 0.16 deleterious(0.02) probably_damaging(0.951) TCGA-BR-6452-01 2 37474636 37474636 C T NDUFAF7 Missense_Mutation p.A325V 0.10 tolerated(0.17) possibly_damaging(0.643) TCGA-BR-6452-01 2 37873127 37873127 C T CDC42EP3 Missense_Mutation p.E202K 0.27 tolerated(0.58) benign(0.008) TCGA-BR-6452-01 2 38975244 38975244 A T SRSF7 Missense_Mutation p.S173T 0.08 deleterious(0.01) benign(0.184) TCGA-BR-6452-01 2 39083499 39083499 G A DHX57 Silent p.V564V 0.12 TCGA-BR-6452-01 2 42522632 42522632 C T EML4 Missense_Mutation p.P489S 0.08 tolerated(1) benign(0.001) TCGA-BR-6452-01 2 42671387 42671387 G A KCNG3 Missense_Mutation p.A333V 0.30 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 2 43015741 43015741 C T HAAO Silent p.Q29Q 0.09 TCGA-BR-6452-01 2 43800083 43800084 - C THADA Frame_Shift_Ins p.A593Gfs*13 0.30 TCGA-BR-6452-01 2 44003961 44003961 A G DYNC2LI1 Missense_Mutation p.R17G 0.08 deleterious(0.02) benign(0.143) TCGA-BR-6452-01 2 44104732 44104732 C T ABCG8 Missense_Mutation p.R597W 0.08 deleterious(0.02) benign(0.351) TCGA-BR-6452-01 2 44436458 44436458 G A PPM1B Missense_Mutation p.R319Q 0.17 deleterious(0.03) possibly_damaging(0.713) TCGA-BR-6452-01 2 46605883 46605883 G A EPAS1 Missense_Mutation p.A511T 0.08 tolerated(0.14) benign(0.008) TCGA-BR-6452-01 2 47389439 47389439 G A CALM2 Missense_Mutation p.R91C 0.11 tolerated_low_confidence(0.1) benign(0.139) TCGA-BR-6452-01 2 48045997 48045997 C T FBXO11 Missense_Mutation p.V643I 0.10 tolerated(0.23) probably_damaging(0.996) TCGA-BR-6452-01 2 48681829 48681829 A T PPP1R21 Missense_Mutation p.E74D 0.10 tolerated(0.3) probably_damaging(0.997) TCGA-BR-6452-01 2 48808804 48808804 C T STON1-GTF2A1L Silent p.I344I 0.25 TCGA-BR-6452-01 2 51255150 51255150 G A NRXN1 Missense_Mutation p.R88C 0.12 deleterious(0) probably_damaging(0.947) TCGA-BR-6452-01 2 54117289 54117289 A T PSME4 Silent p.I1416I 0.08 TCGA-BR-6452-01 2 54163234 54163234 T A PSME4 Missense_Mutation p.Y275F 0.12 deleterious(0.02) probably_damaging(0.917) TCGA-BR-6452-01 2 55561385 55561385 T A CCDC88A Nonsense_Mutation p.K858* 0.11 TCGA-BR-6452-01 2 55756032 55756032 T C CCDC104 Silent p.L101L 0.25 TCGA-BR-6452-01 2 55863427 55863427 C G PNPT1 Missense_Mutation p.R766T 0.13 tolerated_low_confidence(0.14) benign(0.007) TCGA-BR-6452-01 2 5833108 5833108 G A SOX11 Silent p.K85K 0.29 TCGA-BR-6452-01 2 58386904 58386904 T C FANCL Missense_Mutation p.H380R 0.15 deleterious_low_confidence(0.03) possibly_damaging(0.702) TCGA-BR-6452-01 2 58392975 58392975 G C FANCL Missense_Mutation p.A197G 0.09 tolerated(0.23) benign(0.002) TCGA-BR-6452-01 2 60688080 60688080 T C BCL11A Missense_Mutation p.Y656C 0.09 deleterious(0.02) possibly_damaging(0.759) TCGA-BR-6452-01 2 61145339 61145339 T C REL Silent p.T183T 0.14 TCGA-BR-6452-01 2 61180224 61180224 C A PUS10 Missense_Mutation p.G406C 0.07 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 2 61475803 61475803 T C USP34 Silent p.K2079K 0.14 TCGA-BR-6452-01 2 61575064 61575064 T A USP34 Silent p.R742R 0.11 TCGA-BR-6452-01 2 61706036 61706036 A G XPO1 Silent p.A1045A 0.07 TCGA-BR-6452-01 2 61719733 61719733 T C XPO1 Missense_Mutation p.D512G 0.12 tolerated(0.27) possibly_damaging(0.554) TCGA-BR-6452-01 2 61722717 61722717 G A XPO1 Missense_Mutation p.A307V 0.20 tolerated(0.13) benign(0.025) TCGA-BR-6452-01 2 63092022 63092023 - A EHBP1 Frame_Shift_Ins p.R342Kfs*16 0.09 TCGA-BR-6452-01 2 63280175 63280175 T G OTX1 Missense_Mutation p.L17R 0.11 deleterious(0) possibly_damaging(0.558) TCGA-BR-6452-01 2 64114742 64114742 A G UGP2 Silent p.T426T 0.08 TCGA-BR-6452-01 2 64778626 64778626 T G AFTPH Missense_Mutation p.I6M 0.06 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 2 64796799 64796799 T C AFTPH Missense_Mutation p.Y753H 0.08 deleterious(0) probably_damaging(0.983) TCGA-BR-6452-01 2 67630573 67630573 G A ETAA1 Silent p.K253K 0.08 TCGA-BR-6452-01 2 68385539 68385539 C G PNO1 Missense_Mutation p.P79A 0.25 tolerated(0.22) benign(0.001) TCGA-BR-6452-01 2 69002290 69002290 G A ARHGAP25 Intron 0.25 TCGA-BR-6452-01 2 69009410 69009410 A G ARHGAP25 Missense_Mutation p.N103D 0.09 tolerated(0.07) possibly_damaging(0.501) TCGA-BR-6452-01 2 69049650 69049650 G A ARHGAP25 Missense_Mutation p.S460N 0.08 tolerated(0.12) benign(0.011) TCGA-BR-6452-01 2 69093671 69093671 G C BMP10 Missense_Mutation p.L123V 0.18 tolerated(1) benign(0.009) TCGA-BR-6452-01 2 69300209 69300209 T A ANTXR1 Missense_Mutation p.D156E 0.11 tolerated(0.27) benign(0.004) TCGA-BR-6452-01 2 69379379 69379379 C T ANTXR1 Missense_Mutation p.P344S 0.12 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 2 70408456 70408456 C T C2orf42 Missense_Mutation p.R221H 0.15 tolerated(0.06) possibly_damaging(0.754) TCGA-BR-6452-01 2 70408477 70408477 C A C2orf42 Missense_Mutation p.G214V 0.22 tolerated(0.25) benign(0.014) TCGA-BR-6452-01 2 70903857 70903857 C G ADD2 Intron 0.21 TCGA-BR-6452-01 2 71371559 71371559 A - MPHOSPH10 Frame_Shift_Del p.T485Qfs*10 0.19 TCGA-BR-6452-01 2 7137188 7137188 C T RNF144A Missense_Mutation p.T44I 0.25 tolerated(0.16) benign(0.016) TCGA-BR-6452-01 2 71625868 71625868 A G ZNF638 Silent p.V822V 0.06 TCGA-BR-6452-01 2 71660407 71660407 T A ZNF638 Missense_Mutation p.N1955K 0.11 deleterious(0) probably_damaging(0.998) TCGA-BR-6452-01 2 71795459 71795459 C T DYSF Missense_Mutation p.P952L 0.11 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 2 71891479 71891479 C T DYSF Silent p.D1695D 0.18 TCGA-BR-6452-01 2 73476280 73476280 T G CCT7 Silent p.P315P 0.09 TCGA-BR-6452-01 2 73479767 73479767 G - CCT7 Splice_Site p.X472_splice 0.10 TCGA-BR-6452-01 2 73646321 73646321 G T ALMS1 Missense_Mutation p.R174M 0.23 possibly_damaging(0.871) TCGA-BR-6452-01 2 73679769 73679769 C A ALMS1 Missense_Mutation p.P2038T 0.11 benign(0.365) TCGA-BR-6452-01 2 73717072 73717072 C A ALMS1 Missense_Mutation p.F2661L 0.09 benign(0.103) TCGA-BR-6452-01 2 73717193 73717193 C T ALMS1 Missense_Mutation p.P2702S 0.10 benign(0.01) TCGA-BR-6452-01 2 74007024 74007026 CTT - DUSP11 In_Frame_Del p.K73del 0.16 TCGA-BR-6452-01 2 74452027 74452027 T C SLC4A5 Silent p.K1078K 0.09 TCGA-BR-6452-01 2 74652568 74652568 T C WDR54 Missense_Mutation p.F275L 0.11 tolerated(0.09) benign(0.346) TCGA-BR-6452-01 2 74759794 74759794 G A HTRA2 Silent p.Q388Q 0.15 TCGA-BR-6452-01 2 74781909 74781910 - T DOK1 Frame_Shift_Ins p.L12Ffs*33 0.17 TCGA-BR-6452-01 2 74783646 74783646 G A DOK1 Missense_Mutation p.G284D 0.20 tolerated(0.33) benign(0.101) TCGA-BR-6452-01 2 74789369 74789369 T G M1AP Missense_Mutation p.H419P 0.12 tolerated(1) benign(0) TCGA-BR-6452-01 2 74883728 74883728 T C SEMA4F Silent p.D71D 0.08 TCGA-BR-6452-01 2 75101407 75101407 G A HK2 Missense_Mutation p.A236T 0.19 deleterious(0.01) probably_damaging(0.992) TCGA-BR-6452-01 2 75720435 75720435 C T EVA1A Missense_Mutation p.R129H 0.08 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 2 80136866 80136866 G A CTNNA2 Silent p.A333A 0.17 TCGA-BR-6452-01 2 80529659 80529659 A T LRRTM1 Missense_Mutation p.V429D 0.09 deleterious(0) probably_damaging(0.991) TCGA-BR-6452-01 2 80529813 80529813 C T LRRTM1 Missense_Mutation p.V378I 0.15 tolerated(0.43) benign(0.001) TCGA-BR-6452-01 2 80530309 80530309 G A LRRTM1 Silent p.T212T 0.23 TCGA-BR-6452-01 2 80530481 80530481 T C LRRTM1 Missense_Mutation p.D155G 0.11 tolerated(0.99) probably_damaging(0.996) TCGA-BR-6452-01 2 80530587 80530587 G A LRRTM1 Silent p.L120L 0.13 TCGA-BR-6452-01 2 85532498 85532498 C - TCF7L1 Frame_Shift_Del p.S323Afs*2 0.19 TCGA-BR-6452-01 2 85553786 85553786 C T TGOLN2 Missense_Mutation p.G357R 0.14 deleterious(0) probably_damaging(0.991) TCGA-BR-6452-01 2 85570275 85570275 G A RETSAT 3'UTR 0.14 TCGA-BR-6452-01 2 85892879 85892879 T C SFTPB Silent p.K156K 0.07 TCGA-BR-6452-01 2 86280054 86280054 C T POLR1A Missense_Mutation p.G760S 0.12 tolerated(0.06) probably_damaging(1) TCGA-BR-6452-01 2 86352157 86352157 A G PTCD3 Silent p.P252P 0.07 TCGA-BR-6452-01 2 86352159 86352159 A G PTCD3 Missense_Mutation p.E253G 0.14 deleterious(0) probably_damaging(0.994) TCGA-BR-6452-01 2 86832076 86832077 - A RNF103 Frame_Shift_Ins p.L316Ffs*10 0.10 TCGA-BR-6452-01 2 87042828 87042828 C A CD8B Missense_Mutation p.G212C 0.10 deleterious_low_confidence(0.03) probably_damaging(0.984) TCGA-BR-6452-01 2 88384012 88384012 G C SMYD1 Splice_Site p.X105_splice 0.23 TCGA-BR-6452-01 2 88390634 88390634 A G SMYD1 Missense_Mutation p.N211S 0.10 deleterious(0.03) possibly_damaging(0.48) TCGA-BR-6452-01 2 88425860 88425860 C T FABP1 Silent p.P25P 0.19 TCGA-BR-6452-01 2 8871611 8871612 - T KIDINS220 Frame_Shift_Ins p.L1519Tfs*4 0.11 TCGA-BR-6452-01 2 88857224 88857224 A T EIF2AK3 3'UTR 0.08 TCGA-BR-6452-01 2 88874529 88874529 A G EIF2AK3 Silent p.T824T 0.08 TCGA-BR-6452-01 2 88885468 88885468 T A EIF2AK3 Missense_Mutation p.D514V 0.10 tolerated(0.06) probably_damaging(0.943) TCGA-BR-6452-01 2 89156937 89156937 G A IGKC Silent p.C87C 0.08 TCGA-BR-6452-01 2 8919145 8919145 T A KIDINS220 Missense_Mutation p.D832V 0.07 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 2 89309537 89309537 C T IGKV1-9 Missense_Mutation p.S98N 0.10 tolerated(0.09) benign(0.414) TCGA-BR-6452-01 2 8934031 8934031 T A KIDINS220 Silent p.R395R 0.15 TCGA-BR-6452-01 2 9531284 9531284 C A ASAP2 Missense_Mutation p.A826D 0.09 tolerated(0.36) benign(0.05) TCGA-BR-6452-01 2 95481185 95481185 T - ANKRD20A8P RNA 0.08 TCGA-BR-6452-01 2 95780889 95780890 - T MRPS5 Frame_Shift_Ins p.L67Tfs*19 0.20 TCGA-BR-6452-01 2 95815035 95815035 T - ZNF514 Frame_Shift_Del p.T399Pfs*21 0.27 TCGA-BR-6452-01 2 95818505 95818505 A G ZNF514 Missense_Mutation p.V44A 0.07 deleterious(0) benign(0.345) TCGA-BR-6452-01 2 95847534 95847534 A G ZNF2 Missense_Mutation p.K321E 0.13 deleterious(0) possibly_damaging(0.835) TCGA-BR-6452-01 2 96920595 96920595 A G TMEM127 Missense_Mutation p.Y129H 0.06 tolerated(0.52) possibly_damaging(0.773) TCGA-BR-6452-01 2 97377612 97377612 T A LMAN2L Missense_Mutation p.R231W 0.12 deleterious(0.01) probably_damaging(0.992) TCGA-BR-6452-01 2 97490873 97490873 T A CNNM3 Missense_Mutation p.V435D 0.10 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 2 97493602 97493602 A G CNNM3 Missense_Mutation p.S552G 0.11 tolerated(0.34) benign(0.265) TCGA-BR-6452-01 2 97845663 97845663 T G ANKRD36 Silent p.S576S 0.11 TCGA-BR-6452-01 2 98175328 98175328 T C ANKRD36B RNA 0.10 TCGA-BR-6452-01 2 98275349 98275349 G T ACTR1B Missense_Mutation p.L145I 0.12 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 2 98275934 98275934 G A ACTR1B Missense_Mutation p.R66W 0.08 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 2 99778419 99778419 G A LIPT1 Splice_Site 0.23 TCGA-BR-6452-01 2 99778504 99778504 A - LIPT1 Frame_Shift_Del p.N30Mfs*26 0.13 TCGA-BR-6452-01 2 99944055 99944055 T C TXNDC9 Missense_Mutation p.Q84R 0.32 tolerated(0.21) benign(0.009) TCGA-BR-6452-01 3 100148609 100148609 T C LNP1 Silent p.S12S 0.06 TCGA-BR-6452-01 3 100413729 100413729 T C GPR128 Missense_Mutation p.Y760H 0.10 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 3 100413823 100413823 A T GPR128 Missense_Mutation p.D791V 0.08 deleterious(0.01) possibly_damaging(0.823) TCGA-BR-6452-01 3 100964745 100964745 T C IMPG2 Missense_Mutation p.S482G 0.09 tolerated(0.34) benign(0.345) TCGA-BR-6452-01 3 101047497 101047497 A G SENP7 Missense_Mutation p.C930R 0.08 deleterious(0) probably_damaging(0.994) TCGA-BR-6452-01 3 101311692 101311692 T - PCNP 3'UTR 0.35 TCGA-BR-6452-01 3 101525942 101525942 G A NXPE3 Nonsense_Mutation p.W298* 0.21 TCGA-BR-6452-01 3 10264468 10264468 C T IRAK2 Missense_Mutation p.R388W 0.14 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 3 10491114 10491114 C T ATP2B2 Silent p.R38R 0.10 TCGA-BR-6452-01 3 105378039 105378039 T C CBLB Silent p.P908P 0.09 TCGA-BR-6452-01 3 108300296 108300296 T C KIAA1524 Missense_Mutation p.H172R 0.10 tolerated(0.08) benign(0.127) TCGA-BR-6452-01 3 108303909 108303909 T C KIAA1524 Intron 0.12 TCGA-BR-6452-01 3 108324228 108324229 - T DZIP3 5'UTR 0.12 TCGA-BR-6452-01 3 108366943 108366943 T C DZIP3 Missense_Mutation p.L649P 0.08 deleterious_low_confidence(0.02) benign(0.177) TCGA-BR-6452-01 3 108392929 108392929 A T DZIP3 Missense_Mutation p.Y865F 0.06 tolerated(0.27) possibly_damaging(0.632) TCGA-BR-6452-01 3 108639352 108639352 C T GUCA1C Nonsense_Mutation p.W95* 0.08 TCGA-BR-6452-01 3 109031523 109031524 - C DPPA2 Frame_Shift_Ins p.E17Gfs*4 0.14 TCGA-BR-6452-01 3 110840996 110840996 T C PVRL3 Silent p.Y276Y 0.20 TCGA-BR-6452-01 3 111888106 111888106 T - SLC9C1 Frame_Shift_Del p.M997Cfs*3 0.09 TCGA-BR-6452-01 3 112080456 112080456 A T CD200 3'UTR 0.10 TCGA-BR-6452-01 3 112292735 112292735 G T SLC35A5 Splice_Site p.X121_splice 0.05 TCGA-BR-6452-01 3 112358355 112358355 G T CCDC80 Missense_Mutation p.P133H 0.08 deleterious(0) probably_damaging(0.953) TCGA-BR-6452-01 3 112358757 112358757 T C CCDC80 5'UTR 0.08 TCGA-BR-6452-01 3 112999441 112999441 G T BOC Missense_Mutation p.G747C 0.10 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 3 11302082 11302082 C T HRH1 Silent p.T453T 0.09 TCGA-BR-6452-01 3 113169271 113169271 T A SPICE1 Silent p.L745L 0.10 TCGA-BR-6452-01 3 113375207 113375207 A C KIAA2018 Silent p.A1774A 0.07 TCGA-BR-6452-01 3 113375611 113375611 T A KIAA2018 Missense_Mutation p.M1640L 0.07 benign(0.003) TCGA-BR-6452-01 3 113890743 113890743 C T DRD3 Missense_Mutation p.A33T 0.31 deleterious(0) possibly_damaging(0.809) TCGA-BR-6452-01 3 114058003 114058003 G - ZBTB20 Frame_Shift_Del p.P692Lfs*43 0.14 TCGA-BR-6452-01 3 114069198 114069198 T - ZBTB20 Frame_Shift_Del p.K576Sfs*42 0.10 TCGA-BR-6452-01 3 115394864 115394864 A - GAP43 Frame_Shift_Del p.N50Mfs*33 0.08 TCGA-BR-6452-01 3 118621666 118621666 C A IGSF11 Nonsense_Mutation p.E333* 0.07 TCGA-BR-6452-01 3 118867070 118867070 G A C3orf30 Missense_Mutation p.R481H 0.22 tolerated(0.53) benign(0.212) TCGA-BR-6452-01 3 119084197 119084197 A G ARHGAP31 Missense_Mutation p.I45M 0.17 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 3 119120684 119120684 G C ARHGAP31 Missense_Mutation p.G362A 0.08 deleterious(0.01) possibly_damaging(0.666) TCGA-BR-6452-01 3 119449190 119449190 A - MAATS1 Frame_Shift_Del p.M330Wfs*16 0.15 TCGA-BR-6452-01 3 119912236 119912236 A G GPR156 Missense_Mutation p.V90A 0.11 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 3 120369653 120369653 G A HGD Silent p.H134H 0.23 TCGA-BR-6452-01 3 120393819 120393819 G A HGD Silent p.C35C 0.07 TCGA-BR-6452-01 3 121192306 121192306 G - POLQ Frame_Shift_Del p.P2145Qfs*5 0.22 TCGA-BR-6452-01 3 121341232 121341232 T A FBXO40 Missense_Mutation p.I319K 0.08 deleterious(0) probably_damaging(0.934) TCGA-BR-6452-01 3 121433709 121433709 T C GOLGB1 Missense_Mutation p.Q468R 0.11 possibly_damaging(0.516) TCGA-BR-6452-01 3 121573569 121573569 A - EAF2 Frame_Shift_Del p.K81Nfs*4 0.27 TCGA-BR-6452-01 3 121634113 121634113 T A SLC15A2 Missense_Mutation p.S190T 0.08 deleterious(0) benign(0.253) TCGA-BR-6452-01 3 121973127 121973127 G A CASR Missense_Mutation p.D31N 0.12 deleterious(0.02) possibly_damaging(0.571) TCGA-BR-6452-01 3 122087062 122087062 A T CCDC58 Missense_Mutation p.D95E 0.07 deleterious(0.01) benign(0.175) TCGA-BR-6452-01 3 122259515 122259515 T G PARP9 Missense_Mutation p.E558D 0.08 tolerated(0.08) benign(0.033) TCGA-BR-6452-01 3 122287953 122287953 C T DTX3L Silent p.G339G 0.05 TCGA-BR-6452-01 3 122437464 122437464 A G PARP14 Missense_Mutation p.D1489G 0.08 deleterious(0.01) benign(0.4) TCGA-BR-6452-01 3 122641228 122641228 G A SEMA5B Missense_Mutation p.R501C 0.25 deleterious(0) probably_damaging(0.979) TCGA-BR-6452-01 3 122808124 122808124 T C PDIA5 Missense_Mutation p.V51A 0.15 tolerated(0.1) benign(0.109) TCGA-BR-6452-01 3 122869205 122869205 G A PDIA5 Missense_Mutation p.A423T 0.10 deleterious(0.03) probably_damaging(0.995) TCGA-BR-6452-01 3 123018977 123018977 C T ADCY5 Missense_Mutation p.A964T 0.11 deleterious(0.03) benign(0.326) TCGA-BR-6452-01 3 123166319 123166319 G A ADCY5 Silent p.S358S 0.19 TCGA-BR-6452-01 3 123339335 123339335 G A MYLK Intron 0.31 TCGA-BR-6452-01 3 123376176 123376176 G T MYLK Missense_Mutation p.A1362D 0.15 deleterious(0) probably_damaging(0.934) TCGA-BR-6452-01 3 123634043 123634043 T C CCDC14 Silent p.G774G 0.09 TCGA-BR-6452-01 3 123665705 123665705 T - CCDC14 Frame_Shift_Del p.V390Lfs*4 0.10 TCGA-BR-6452-01 3 124132336 124132336 C T KALRN Missense_Mutation p.A787V 0.09 tolerated(0.28) benign(0.312) TCGA-BR-6452-01 3 124215187 124215187 G T KALRN Missense_Mutation p.G1619V 0.08 deleterious(0.04) possibly_damaging(0.835) TCGA-BR-6452-01 3 124728610 124728610 C A HEG1 Missense_Mutation p.Q1044H 0.12 tolerated(0.06) possibly_damaging(0.833) TCGA-BR-6452-01 3 124731782 124731782 G A HEG1 Missense_Mutation p.L881F 0.10 tolerated(0.21) benign(0.01) TCGA-BR-6452-01 3 125652536 125652536 T A ALG1L 5'UTR 0.16 TCGA-BR-6452-01 3 125741771 125741771 C G SLC41A3 Silent p.V201V 0.07 TCGA-BR-6452-01 3 125787043 125787043 C T SLC41A3 Missense_Mutation p.R7Q 0.09 tolerated(0.08) benign(0.256) TCGA-BR-6452-01 3 125850318 125850318 G A ALDH1L1 Missense_Mutation p.A521V 0.22 deleterious(0.01) possibly_damaging(0.46) TCGA-BR-6452-01 3 126224593 126224593 G T UROC1 Missense_Mutation p.A255D 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-BR-6452-01 3 1262436 1262436 T A CNTN6 Missense_Mutation p.L41I 0.11 deleterious(0.02) benign(0.11) TCGA-BR-6452-01 3 12632428 12632428 T G RAF1 Silent p.T413T 0.07 TCGA-BR-6452-01 3 12641249 12641249 A G RAF1 Missense_Mutation p.M350T 0.09 tolerated(0.53) benign(0.003) TCGA-BR-6452-01 3 126749143 126749143 C T PLXNA1 Missense_Mutation p.R1707W 0.22 deleterious(0) possibly_damaging(0.851) TCGA-BR-6452-01 3 127327330 127327330 G A MCM2 Missense_Mutation p.V403M 0.08 deleterious(0.01) possibly_damaging(0.518) TCGA-BR-6452-01 3 127395250 127395250 T C ABTB1 Silent p.S152S 0.22 TCGA-BR-6452-01 3 127703079 127703079 C - KBTBD12 Frame_Shift_Del p.P612Rfs*78 0.27 TCGA-BR-6452-01 3 12783956 12783956 C A TMEM40 Nonsense_Mutation p.G118* 0.08 TCGA-BR-6452-01 3 128077166 128077166 T C EEFSEC Missense_Mutation p.I517T 0.12 tolerated(0.29) benign(0.004) TCGA-BR-6452-01 3 128204623 128204623 C - GATA2 Frame_Shift_Del p.G273Dfs*53 0.21 TCGA-BR-6452-01 3 12858333 12858333 T C CAND2 Silent p.L634L 0.08 TCGA-BR-6452-01 3 128584124 128584124 C T RP11-723O4.9 5'Flank 0.10 TCGA-BR-6452-01 3 128707683 128707683 C T KIAA1257 Missense_Mutation p.R114H 0.16 tolerated(0.21) benign(0.027) TCGA-BR-6452-01 3 128711957 128711957 G T KIAA1257 Missense_Mutation p.T64N 0.08 tolerated(0.06) benign(0.202) TCGA-BR-6452-01 3 128780907 128780907 C T GP9 Silent p.L109L 0.21 TCGA-BR-6452-01 3 129185775 129185775 C T IFT122 Silent p.A253A 0.13 TCGA-BR-6452-01 3 129195221 129195221 T C IFT122 Missense_Mutation p.Y345H 0.08 deleterious(0) probably_damaging(0.998) TCGA-BR-6452-01 3 129226602 129226602 C G IFT122 Missense_Mutation p.H1012Q 0.09 deleterious(0) benign(0.212) TCGA-BR-6452-01 3 129249874 129249874 G A RHO Missense_Mutation p.A173T 0.10 deleterious(0.02) benign(0.027) TCGA-BR-6452-01 3 129279264 129279264 T C PLXND1 Missense_Mutation p.D1681G 0.12 deleterious(0.02) probably_damaging(0.98) TCGA-BR-6452-01 3 129389372 129389373 - T TMCC1 Frame_Shift_Ins p.G438Rfs*23 0.11 TCGA-BR-6452-01 3 12944311 12944311 G A IQSEC1 Missense_Mutation p.R937C 0.13 deleterious(0.01) benign(0.066) TCGA-BR-6452-01 3 129695921 129695921 T C TRH Silent p.C197C 0.08 TCGA-BR-6452-01 3 12977116 12977116 T C IQSEC1 Missense_Mutation p.D481G 0.09 deleterious(0.01) probably_damaging(0.916) TCGA-BR-6452-01 3 129821715 129821715 C - FAM86HP RNA 0.12 TCGA-BR-6452-01 3 129823065 129823065 G A FAM86HP RNA 0.19 TCGA-BR-6452-01 3 130159354 130159354 A T COL6A5 Missense_Mutation p.I2058F 0.14 tolerated(0.1) possibly_damaging(0.558) TCGA-BR-6452-01 3 130281935 130281935 T - COL6A6 Frame_Shift_Del p.L31Wfs*16 0.22 TCGA-BR-6452-01 3 130300604 130300604 A C COL6A6 Missense_Mutation p.K1249N 0.10 tolerated(0.47) possibly_damaging(0.535) TCGA-BR-6452-01 3 130311908 130311908 G T COL6A6 Nonsense_Mutation p.E1459* 0.09 TCGA-BR-6452-01 3 130381128 130381128 A G COL6A6 Missense_Mutation p.K2160E 0.09 deleterious(0) benign(0.25) TCGA-BR-6452-01 3 130405096 130405096 G A PIK3R4 Missense_Mutation p.T1145I 0.09 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 3 130447320 130447320 A - PIK3R4 Frame_Shift_Del p.F598Lfs*4 0.15 TCGA-BR-6452-01 3 130447430 130447430 T C PIK3R4 Missense_Mutation p.T562A 0.09 deleterious(0.04) benign(0.341) TCGA-BR-6452-01 3 130682820 130682820 C T ATP2C1 Missense_Mutation p.A336V 0.18 deleterious(0) probably_damaging(0.998) TCGA-BR-6452-01 3 130743433 130743433 G A ASTE1 Missense_Mutation p.R240C 0.18 tolerated(0.14) benign(0.01) TCGA-BR-6452-01 3 132036264 132036264 T C ACPP 5'UTR 0.10 TCGA-BR-6452-01 3 132068825 132068825 A G ACPP Silent p.K281K 0.11 TCGA-BR-6452-01 3 132207831 132207831 A G DNAJC13 Missense_Mutation p.Y1145C 0.14 tolerated(0.09) benign(0.017) TCGA-BR-6452-01 3 132257035 132257035 G A DNAJC13 Missense_Mutation p.G2214D 0.19 deleterious(0) benign(0.399) TCGA-BR-6452-01 3 132319590 132319590 G A ACKR4 Missense_Mutation p.A117T 0.06 tolerated(0.19) possibly_damaging(0.583) TCGA-BR-6452-01 3 132402349 132402349 A G NPHP3 Missense_Mutation p.V1197A 0.11 tolerated(0.42) benign(0.014) TCGA-BR-6452-01 3 133341983 133341983 T C TOPBP1 Missense_Mutation p.K1044E 0.09 tolerated(0.42) benign(0.007) TCGA-BR-6452-01 3 133494403 133494403 C A TF Missense_Mutation p.A605D 0.09 deleterious(0) probably_damaging(0.979) TCGA-BR-6452-01 3 133538536 133538536 G A SRPRB Missense_Mutation p.A248T 0.17 deleterious(0.04) possibly_damaging(0.685) TCGA-BR-6452-01 3 13363106 13363106 C T NUP210 Silent p.P1715P 0.10 TCGA-BR-6452-01 3 13370369 13370369 C T NUP210 Silent p.V1396V 0.11 TCGA-BR-6452-01 3 134089923 134089923 G A AMOTL2 Missense_Mutation p.A118V 0.19 tolerated(0.16) probably_damaging(0.997) TCGA-BR-6452-01 3 134277113 134277113 A T CEP63 Missense_Mutation p.M533L 0.11 tolerated(0.16) benign(0.001) TCGA-BR-6452-01 3 134323034 134323034 G A KY Missense_Mutation p.S458L 0.15 deleterious(0) possibly_damaging(0.746) TCGA-BR-6452-01 3 134338077 134338077 T C KY Missense_Mutation p.D208G 0.07 tolerated(0.33) benign(0.005) TCGA-BR-6452-01 3 13538268 13538268 C - HDAC11 Frame_Shift_Del p.V98Lfs*14 0.29 TCGA-BR-6452-01 3 135720924 135720924 C T PPP2R3A Missense_Mutation p.T195M 0.14 tolerated_low_confidence(0.15) benign(0.006) TCGA-BR-6452-01 3 135721357 135721357 G A PPP2R3A Silent p.Q339Q 0.10 TCGA-BR-6452-01 3 135870699 135870699 G A MSL2 Nonsense_Mutation p.R342* 0.21 TCGA-BR-6452-01 3 136323179 136323179 A G STAG1 Missense_Mutation p.V90A 0.09 tolerated(0.38) possibly_damaging(0.717) TCGA-BR-6452-01 3 136665098 136665098 A G NCK1 Silent p.G300G 0.07 TCGA-BR-6452-01 3 136699431 136699431 A G IL20RB Missense_Mutation p.Q71R 0.06 deleterious(0) possibly_damaging(0.466) TCGA-BR-6452-01 3 1369239 1369239 A T CNTN6 Silent p.I394I 0.18 TCGA-BR-6452-01 3 137749876 137749876 G A CLDN18 Missense_Mutation p.A227T 0.08 tolerated_low_confidence(0.16) benign(0.002) TCGA-BR-6452-01 3 137783521 137783521 A - DZIP1L Frame_Shift_Del p.F697Lfs*80 0.20 TCGA-BR-6452-01 3 137991841 137991841 A G ARMC8 Silent p.K490K 0.10 TCGA-BR-6452-01 3 138183274 138183274 G A ESYT3 Missense_Mutation p.A335T 0.13 deleterious(0.05) probably_damaging(1) TCGA-BR-6452-01 3 138255958 138255958 A - CEP70 Intron 0.20 TCGA-BR-6452-01 3 138383975 138383975 T C PIK3CB Missense_Mutation p.T859A 0.13 deleterious(0) probably_damaging(0.997) TCGA-BR-6452-01 3 138453548 138453548 T G PIK3CB Silent p.I300I 0.06 TCGA-BR-6452-01 3 138461549 138461549 C T PIK3CB Missense_Mutation p.E158K 0.10 deleterious(0.01) benign(0.158) TCGA-BR-6452-01 3 138669110 138669110 C T C3orf72 Missense_Mutation p.P75L 0.10 deleterious_low_confidence(0) probably_damaging(0.96) TCGA-BR-6452-01 3 141161678 141161679 - A ZBTB38 Frame_Shift_Ins p.R152Kfs*3 0.11 TCGA-BR-6452-01 3 141497221 141497221 G A GRK7 Missense_Mutation p.R32Q 0.21 deleterious(0) benign(0.124) TCGA-BR-6452-01 3 141678643 141678643 G C TFDP2 Missense_Mutation p.I308M 0.09 deleterious(0.05) probably_damaging(0.999) TCGA-BR-6452-01 3 142037739 142037739 T C XRN1 Missense_Mutation p.T1470A 0.08 tolerated_low_confidence(0.12) benign(0.129) TCGA-BR-6452-01 3 142054303 142054304 - T XRN1 Frame_Shift_Ins p.M1309Nfs*4 0.15 TCGA-BR-6452-01 3 142186802 142186802 T C ATR Missense_Mutation p.K2221E 0.08 deleterious(0.02) benign(0.335) TCGA-BR-6452-01 3 142242991 142242991 G T ATR Silent p.I1332I 0.13 TCGA-BR-6452-01 3 142720419 142720419 T C U2SURP 5'UTR 0.14 TCGA-BR-6452-01 3 142840751 142840751 C T CHST2 Missense_Mutation p.R365C 0.19 deleterious(0) probably_damaging(0.998) TCGA-BR-6452-01 3 145788925 145788925 T - PLOD2 Frame_Shift_Del p.K675Nfs*21 0.19 TCGA-BR-6452-01 3 145824343 145824343 T G PLOD2 Missense_Mutation p.K197N 0.11 tolerated(0.14) benign(0.17) TCGA-BR-6452-01 3 146234850 146234850 G A PLSCR1 Silent p.F281F 0.17 TCGA-BR-6452-01 3 14708358 14708358 A G CCDC174 Missense_Mutation p.R210G 0.05 deleterious(0) benign(0.253) TCGA-BR-6452-01 3 14802989 14802989 G - C3orf20 Frame_Shift_Del p.K790Sfs*9 0.22 TCGA-BR-6452-01 3 148894077 148894077 A G CP Silent p.H1047H 0.07 TCGA-BR-6452-01 3 148896212 148896212 A T CP Missense_Mutation p.N956K 0.11 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 3 14949150 14949150 A G FGD5 Missense_Mutation p.N1090D 0.08 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 3 14960290 14960290 C A FGD5 Silent p.P1173P 0.10 TCGA-BR-6452-01 3 14967691 14967691 T C FGD5 Missense_Mutation p.Y1395H 0.12 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 3 149678562 149678562 A G RNF13 Missense_Mutation p.K273E 0.11 deleterious(0.04) possibly_damaging(0.843) TCGA-BR-6452-01 3 149686261 149686261 T C PFN2 Missense_Mutation p.K70R 0.10 tolerated(0.18) probably_damaging(0.998) TCGA-BR-6452-01 3 150460021 150460021 G A SIAH2 Silent p.S294S 0.08 TCGA-BR-6452-01 3 150845683 150845683 A G MED12L Silent p.A156A 0.10 TCGA-BR-6452-01 3 150874007 150874007 T C MED12L Missense_Mutation p.Y206H 0.10 deleterious(0.04) possibly_damaging(0.774) TCGA-BR-6452-01 3 15094115 15094115 C T MRPS25 Missense_Mutation p.E119K 0.18 tolerated(0.82) benign(0.159) TCGA-BR-6452-01 3 151012163 151012163 T - GPR87 Frame_Shift_Del p.I291Sfs*22 0.10 TCGA-BR-6452-01 3 151012373 151012373 T C GPR87 Missense_Mutation p.I221V 0.09 tolerated(0.26) benign(0.006) TCGA-BR-6452-01 3 151055700 151055700 T C P2RY12 Missense_Mutation p.M312V 0.12 tolerated(0.29) benign(0.003) TCGA-BR-6452-01 3 151055985 151055985 A G P2RY12 Missense_Mutation p.Y217H 0.11 deleterious(0) probably_damaging(0.982) TCGA-BR-6452-01 3 151085503 151085503 T C MED12L Missense_Mutation p.S1098P 0.13 tolerated(0.11) possibly_damaging(0.567) TCGA-BR-6452-01 3 15116040 15116040 T A ZFYVE20 Missense_Mutation p.E535V 0.10 tolerated_low_confidence(0.06) benign(0.081) TCGA-BR-6452-01 3 151161304 151161304 T C IGSF10 Missense_Mutation p.S1811G 0.13 deleterious(0) possibly_damaging(0.732) TCGA-BR-6452-01 3 151164151 151164151 T A IGSF10 Missense_Mutation p.Q1206H 0.06 tolerated(1) benign(0) TCGA-BR-6452-01 3 15132024 15132024 T - ZFYVE20 Frame_Shift_Del p.A58Qfs*6 0.09 TCGA-BR-6452-01 3 151458527 151458527 T A AADACL2 Missense_Mutation p.Y78N 0.08 tolerated(1) benign(0.001) TCGA-BR-6452-01 3 151458575 151458575 T A AADACL2 Missense_Mutation p.Y94N 0.11 deleterious(0.01) probably_damaging(0.981) TCGA-BR-6452-01 3 151474982 151474982 A C AADACL2 Missense_Mutation p.H269P 0.06 deleterious(0) probably_damaging(0.992) TCGA-BR-6452-01 3 151545684 151545685 - A AADAC Frame_Shift_Ins p.Y311Ifs*15 0.10 TCGA-BR-6452-01 3 152554074 152554074 C T P2RY1 Missense_Mutation p.A168V 0.09 deleterious(0) possibly_damaging(0.767) TCGA-BR-6452-01 3 153840495 153840495 C G ARHGEF26 Missense_Mutation p.N238K 0.19 deleterious(0.04) benign(0.11) TCGA-BR-6452-01 3 154007584 154007584 T G DHX36 Missense_Mutation p.N616H 0.18 deleterious(0.01) possibly_damaging(0.885) TCGA-BR-6452-01 3 154033048 154033048 A G DHX36 Silent p.T130T 0.09 TCGA-BR-6452-01 3 154146892 154146892 G T GPR149 Silent p.G171G 0.14 TCGA-BR-6452-01 3 154834710 154834710 A G MME Missense_Mutation p.K197E 0.08 tolerated(0.27) possibly_damaging(0.69) TCGA-BR-6452-01 3 155199955 155199955 G T PLCH1 Missense_Mutation p.A1295D 0.08 tolerated_low_confidence(0.47) benign(0.097) TCGA-BR-6452-01 3 155210593 155210593 C T PLCH1 Silent p.K732K 0.09 TCGA-BR-6452-01 3 155232581 155232581 A T PLCH1 Missense_Mutation p.D509E 0.10 tolerated(0.06) benign(0.163) TCGA-BR-6452-01 3 155314063 155314063 G A PLCH1 Missense_Mutation p.R50C 0.06 tolerated(1) benign(0.005) TCGA-BR-6452-01 3 155571069 155571069 A G SLC33A1 Missense_Mutation p.F240L 0.14 deleterious(0.02) possibly_damaging(0.897) TCGA-BR-6452-01 3 155624029 155624029 C T GMPS Missense_Mutation p.A168V 0.09 deleterious(0) benign(0.356) TCGA-BR-6452-01 3 156241671 156241671 A C KCNAB1 Missense_Mutation p.N339T 0.07 tolerated(0.46) benign(0.002) TCGA-BR-6452-01 3 156396296 156396297 - A TIPARP Frame_Shift_Ins p.R272Kfs*13 0.09 TCGA-BR-6452-01 3 156979019 156979019 C A VEPH1 Missense_Mutation p.K802N 0.08 deleterious(0) probably_damaging(0.948) TCGA-BR-6452-01 3 157031509 157031509 A G VEPH1 Silent p.H637H 0.07 TCGA-BR-6452-01 3 158369951 158369951 G A GFM1 Silent p.E252E 0.10 TCGA-BR-6452-01 3 160120548 160120549 - A SMC4 Frame_Shift_Ins p.I137Nfs*4 0.16 TCGA-BR-6452-01 3 160146611 160146611 A G SMC4 Silent p.V892V 0.09 TCGA-BR-6452-01 3 160155817 160155817 T C TRIM59 Missense_Mutation p.I385M 0.10 tolerated(0.37) benign(0.003) TCGA-BR-6452-01 3 160804562 160804562 C T B3GALNT1 5'UTR 0.22 TCGA-BR-6452-01 3 160951189 160951189 A G NMD3 Silent p.V93V 0.10 TCGA-BR-6452-01 3 160968724 160968724 C T NMD3 3'UTR 0.17 TCGA-BR-6452-01 3 161146942 161146942 A G RP11-3P17.5 RNA 0.21 TCGA-BR-6452-01 3 16260950 16260950 G T GALNT15 Missense_Mutation p.R478M 0.06 deleterious(0.03) possibly_damaging(0.614) TCGA-BR-6452-01 3 16261424 16261424 A C GALNT15 Missense_Mutation p.N511T 0.07 deleterious(0) possibly_damaging(0.825) TCGA-BR-6452-01 3 165547744 165547744 A G BCHE Missense_Mutation p.Y360H 0.10 deleterious(0) probably_damaging(0.998) TCGA-BR-6452-01 3 167189553 167189553 G A SERPINI2 Nonsense_Mutation p.Q24* 0.05 TCGA-BR-6452-01 3 167422672 167422672 T A PDCD10 Silent p.V36V 0.10 TCGA-BR-6452-01 3 168833263 168833263 T C MECOM Silent p.G676G 0.15 TCGA-BR-6452-01 3 168864280 168864280 C T MECOM 5'Flank 0.14 TCGA-BR-6452-01 3 169099286 169099286 G A MECOM Missense_Mutation p.P46S 0.21 tolerated(0.12) benign(0.098) TCGA-BR-6452-01 3 169487346 169487346 C T ACTRT3 5'UTR 0.12 TCGA-BR-6452-01 3 169487348 169487348 C G ACTRT3 5'UTR 0.12 TCGA-BR-6452-01 3 169497203 169497203 A G MYNN Missense_Mutation p.N305S 0.09 tolerated(0.27) benign(0.253) TCGA-BR-6452-01 3 169574164 169574164 T A LRRC31 Missense_Mutation p.L261F 0.08 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 3 169664276 169664276 G T RP11-379K17.4 RNA 0.11 TCGA-BR-6452-01 3 169801907 169801907 C T GPR160 Silent p.N49N 0.07 TCGA-BR-6452-01 3 169802241 169802241 T C GPR160 Missense_Mutation p.Y161H 0.07 tolerated(0.13) possibly_damaging(0.736) TCGA-BR-6452-01 3 169831155 169831155 A G PHC3 Silent p.I782I 0.09 TCGA-BR-6452-01 3 17053060 17053060 G T PLCL2 Missense_Mutation p.S615I 0.09 deleterious(0) probably_damaging(0.924) TCGA-BR-6452-01 3 170611130 170611130 T C EIF5A2 3'UTR 0.13 TCGA-BR-6452-01 3 170945964 170945964 T A TNIK Missense_Mutation p.D57V 0.09 deleterious(0) unknown(0) TCGA-BR-6452-01 3 171455832 171455832 T C PLD1 Missense_Mutation p.K4E 0.09 tolerated_low_confidence(0.16) benign(0.04) TCGA-BR-6452-01 3 172607409 172607409 C T SPATA16 Missense_Mutation p.R554Q 0.12 deleterious(0.01) benign(0.417) TCGA-BR-6452-01 3 173999064 173999064 C T NLGN1 Missense_Mutation p.P815S 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.803) TCGA-BR-6452-01 3 176743247 176743247 A G TBL1XR1 3'UTR 0.09 TCGA-BR-6452-01 3 178748682 178748682 G T ZMAT3 Missense_Mutation p.P126T 0.08 tolerated(0.6) benign(0.024) TCGA-BR-6452-01 3 178921493 178921493 A G PIK3CA Silent p.K325K 0.11 TCGA-BR-6452-01 3 178927472 178927472 G A PIK3CA Missense_Mutation p.R412Q 0.22 deleterious(0.03) probably_damaging(0.968) TCGA-BR-6452-01 3 178936097 178936097 G A PIK3CA Missense_Mutation p.E547K 0.07 deleterious(0.01) probably_damaging(0.989) TCGA-BR-6452-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.12 tolerated(0.11) possibly_damaging(0.529) TCGA-BR-6452-01 3 178960933 178960933 A G KCNMB3 Missense_Mutation p.I200T 0.17 deleterious(0) possibly_damaging(0.762) TCGA-BR-6452-01 3 179046097 179046097 A - ZNF639 Frame_Shift_Del p.R8Efs*17 0.18 TCGA-BR-6452-01 3 179052007 179052007 T C ZNF639 Missense_Mutation p.C419R 0.16 tolerated(0.36) probably_damaging(0.986) TCGA-BR-6452-01 3 179093044 179093044 G A MFN1 Missense_Mutation p.E338K 0.10 deleterious(0.01) benign(0.035) TCGA-BR-6452-01 3 179095217 179095217 T C MFN1 Missense_Mutation p.V437A 0.10 tolerated(0.06) benign(0.014) TCGA-BR-6452-01 3 179292257 179292257 T C ACTL6A Splice_Site p.X159_splice 0.07 TCGA-BR-6452-01 3 180322027 180322027 A C TTC14 Missense_Mutation p.L167F 0.15 deleterious(0.01) possibly_damaging(0.854) TCGA-BR-6452-01 3 180327713 180327713 T C TTC14 Missense_Mutation p.Y566H 0.06 tolerated_low_confidence(0.52) unknown(0) TCGA-BR-6452-01 3 180686004 180686004 G A FXR1 Missense_Mutation p.R455H 0.23 tolerated_low_confidence(0.4) benign(0.059) TCGA-BR-6452-01 3 181430901 181430901 C - SOX2 Frame_Shift_Del p.P253Lfs*21 0.19 TCGA-BR-6452-01 3 182598714 182598714 T A ATP11B Silent p.A818A 0.11 TCGA-BR-6452-01 3 182605474 182605474 T C ATP11B Missense_Mutation p.V939A 0.08 tolerated(0.35) benign(0.007) TCGA-BR-6452-01 3 182607279 182607280 - T ATP11B Frame_Shift_Ins p.G978Wfs*110 0.10 TCGA-BR-6452-01 3 183013131 183013131 T C MCF2L2 Silent p.S544S 0.08 TCGA-BR-6452-01 3 183209848 183209848 C T KLHL6 Missense_Mutation p.C578Y 0.09 deleterious(0) possibly_damaging(0.607) TCGA-BR-6452-01 3 183368392 183368392 T C KLHL24 Missense_Mutation p.V83A 0.07 tolerated(0.33) benign(0.013) TCGA-BR-6452-01 3 183390214 183390214 A G KLHL24 Missense_Mutation p.Y515C 0.12 deleterious(0) probably_damaging(0.981) TCGA-BR-6452-01 3 183435470 183435470 T C YEATS2 Silent p.T44T 0.08 TCGA-BR-6452-01 3 183479352 183479352 A G YEATS2 Missense_Mutation p.K572E 0.07 deleterious_low_confidence(0.03) possibly_damaging(0.796) TCGA-BR-6452-01 3 183660562 183660562 G A ABCC5 Missense_Mutation p.T1216M 0.10 deleterious(0.05) possibly_damaging(0.772) TCGA-BR-6452-01 3 183700588 183700588 T A ABCC5 Missense_Mutation p.N267Y 0.10 deleterious(0.01) benign(0.409) TCGA-BR-6452-01 3 183854437 183854437 A G EIF2B5 Missense_Mutation p.Y78C 0.08 deleterious(0) probably_damaging(0.995) TCGA-BR-6452-01 3 183854618 183854618 A T EIF2B5 Intron 0.09 TCGA-BR-6452-01 3 183882163 183882163 C - DVL3 Frame_Shift_Del p.P115Hfs*44 0.11 TCGA-BR-6452-01 3 183911336 183911336 G A ABCF3 Silent p.V660V 0.07 TCGA-BR-6452-01 3 184025236 184025236 C T PSMD2 Missense_Mutation p.T709I 0.10 deleterious(0.02) benign(0.388) TCGA-BR-6452-01 3 184046703 184046703 T A EIF4G1 Silent p.I1369I 0.09 TCGA-BR-6452-01 3 184049520 184049520 A T EIF4G1 Missense_Mutation p.N1474I 0.09 deleterious(0) possibly_damaging(0.829) TCGA-BR-6452-01 3 184062678 184062678 C T FAM131A Missense_Mutation p.R341W 0.19 tolerated(0.19) benign(0.001) TCGA-BR-6452-01 3 184075458 184075458 G A CLCN2 Missense_Mutation p.A241V 0.09 tolerated(0.11) benign(0.393) TCGA-BR-6452-01 3 184090537 184090537 A G THPO Missense_Mutation p.S276P 0.06 tolerated_low_confidence(1) benign(0) TCGA-BR-6452-01 3 184298290 184298290 A G EPHB3 Missense_Mutation p.D758G 0.09 deleterious(0.01) benign(0.121) TCGA-BR-6452-01 3 18456661 18456661 T G SATB1 Missense_Mutation p.K194T 0.08 deleterious(0) possibly_damaging(0.844) TCGA-BR-6452-01 3 184922382 184922382 G T EHHADH Silent p.P244P 0.10 TCGA-BR-6452-01 3 185146294 185146294 C T MAP3K13 5'UTR 0.21 TCGA-BR-6452-01 3 185782253 185782253 C T ETV5 Missense_Mutation p.C308Y 0.07 deleterious(0.02) probably_damaging(0.999) TCGA-BR-6452-01 3 185797835 185797835 G - ETV5 Frame_Shift_Del p.L141Sfs*66 0.29 TCGA-BR-6452-01 3 186364090 186364090 T C FETUB Silent p.C216C 0.08 TCGA-BR-6452-01 3 186459531 186459531 G A KNG1 Missense_Mutation p.R449H 0.09 tolerated(1) benign(0) TCGA-BR-6452-01 3 186505288 186505288 G A EIF4A2 Missense_Mutation p.G305D 0.20 deleterious(0) probably_damaging(0.946) TCGA-BR-6452-01 3 189690757 189690757 G A LEPREL1 Silent p.S535S 0.09 TCGA-BR-6452-01 3 190158100 190158100 T A TMEM207 Missense_Mutation p.R79S 0.10 tolerated(0.13) benign(0.019) TCGA-BR-6452-01 3 190341190 190341190 A T IL1RAP Missense_Mutation p.Y254F 0.09 tolerated(0.43) benign(0.182) TCGA-BR-6452-01 3 190366254 190366254 C A IL1RAP Intron 0.09 TCGA-BR-6452-01 3 192125880 192125880 C T FGF12 Missense_Mutation p.V45I 0.17 tolerated(0.93) benign(0.001) TCGA-BR-6452-01 3 192516331 192516331 T A MB21D2 Silent p.P440P 0.08 TCGA-BR-6452-01 3 193039614 193039614 C A ATP13A5 Missense_Mutation p.A591S 0.08 tolerated(0.12) benign(0.262) TCGA-BR-6452-01 3 193071938 193071938 A G ATP13A5 Missense_Mutation p.I195T 0.11 deleterious(0.05) possibly_damaging(0.525) TCGA-BR-6452-01 3 193210730 193210730 A G ATP13A4 Missense_Mutation p.L170S 0.18 deleterious(0) probably_damaging(0.991) TCGA-BR-6452-01 3 193353272 193353272 G A OPA1 Silent p.L285L 0.09 TCGA-BR-6452-01 3 19389261 19389261 T C KCNH8 Silent p.S205S 0.07 TCGA-BR-6452-01 3 194158135 194158135 A G ATP13A3 Missense_Mutation p.M635T 0.12 deleterious(0) possibly_damaging(0.789) TCGA-BR-6452-01 3 19554610 19554610 G T KCNH8 Missense_Mutation p.G743V 0.13 tolerated(0.06) benign(0.344) TCGA-BR-6452-01 3 19559491 19559491 T A KCNH8 Missense_Mutation p.D848E 0.09 tolerated(0.67) benign(0.001) TCGA-BR-6452-01 3 196050829 196050829 G A TM4SF19 Silent p.C163C 0.16 TCGA-BR-6452-01 3 196288311 196288313 AGG - WDR53 In_Frame_Del p.P12del 0.11 TCGA-BR-6452-01 3 196304328 196304328 G A FBXO45 Missense_Mutation p.R108H 0.07 deleterious(0) probably_damaging(0.939) TCGA-BR-6452-01 3 196387867 196387867 C - NRROS Frame_Shift_Del p.P453Lfs*12 0.18 TCGA-BR-6452-01 3 196460829 196460829 C T PIGX 3'Flank 0.11 TCGA-BR-6452-01 3 196626927 196626927 T C SENP5 Silent p.N584N 0.14 TCGA-BR-6452-01 3 196736663 196736663 A G MFI2 Missense_Mutation p.Y451H 0.12 deleterious(0.01) possibly_damaging(0.905) TCGA-BR-6452-01 3 196876654 196876654 G - DLG1 Frame_Shift_Del p.P199Qfs*81 0.10 TCGA-BR-6452-01 3 197428660 197428660 T C KIAA0226 Missense_Mutation p.T216A 0.18 tolerated(0.59) benign(0.002) TCGA-BR-6452-01 3 197665523 197665523 G A IQCG Silent p.G137G 0.11 TCGA-BR-6452-01 3 197707271 197707271 T G LMLN Missense_Mutation p.D208E 0.06 deleterious(0.05) possibly_damaging(0.693) TCGA-BR-6452-01 3 19959879 19959879 G T EFHB Missense_Mutation p.P341H 0.07 deleterious(0) possibly_damaging(0.894) TCGA-BR-6452-01 3 20017562 20017562 T A RAB5A Missense_Mutation p.N113K 0.09 tolerated(0.84) benign(0.046) TCGA-BR-6452-01 3 23952357 23952357 T A NKIRAS1 Missense_Mutation p.L13F 0.13 deleterious(0.04) benign(0.029) TCGA-BR-6452-01 3 25215993 25215993 A T AC133680.1 3'Flank 0.12 TCGA-BR-6452-01 3 25502818 25502818 T A RARB Missense_Mutation p.C98S 0.22 deleterious(0) possibly_damaging(0.5) TCGA-BR-6452-01 3 25641012 25641012 G A TOP2B Nonsense_Mutation p.R1537* 0.12 TCGA-BR-6452-01 3 25685185 25685185 C T TOP2B Missense_Mutation p.V106I 0.05 deleterious(0) probably_damaging(0.997) TCGA-BR-6452-01 3 28454686 28454686 T C ZCWPW2 Silent p.L43L 0.06 TCGA-BR-6452-01 3 28566019 28566019 T C ZCWPW2 Missense_Mutation p.L304S 0.06 deleterious(0.04) benign(0.015) TCGA-BR-6452-01 3 30713436 30713436 G A TGFBR2 Missense_Mutation p.R279H 0.24 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 3 3081933 3081933 G A CNTN4 Silent p.T792T 0.19 TCGA-BR-6452-01 3 31710251 31710251 T C OSBPL10 Missense_Mutation p.N660S 0.07 deleterious(0.01) probably_damaging(0.922) TCGA-BR-6452-01 3 3188145 3188145 G A TRNT1 Missense_Mutation p.D214N 0.09 tolerated(0.6) benign(0.001) TCGA-BR-6452-01 3 3192623 3192623 G A CRBN Nonsense_Mutation p.R419* 0.11 TCGA-BR-6452-01 3 3192649 3192649 G A CRBN Missense_Mutation p.S410L 0.11 tolerated(0.25) benign(0.001) TCGA-BR-6452-01 3 32031152 32031152 G T ZNF860 Missense_Mutation p.R194I 0.12 tolerated(0.1) benign(0.031) TCGA-BR-6452-01 3 32483359 32483359 G A CMTM7 Missense_Mutation p.V63M 0.24 deleterious(0) probably_damaging(0.973) TCGA-BR-6452-01 3 32493939 32493939 A C CMTM7 Missense_Mutation p.K163T 0.10 deleterious(0) probably_damaging(0.98) TCGA-BR-6452-01 3 32769230 32769230 T C CNOT10 Silent p.C421C 0.16 TCGA-BR-6452-01 3 32859686 32859686 G A TRIM71 Silent p.T38T 0.15 TCGA-BR-6452-01 3 33038592 33038593 - T GLB1 Frame_Shift_Ins p.R660Kfs*62 0.13 TCGA-BR-6452-01 3 33425581 33425581 G A FBXL2 Missense_Mutation p.C351Y 0.12 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 3 33431763 33431763 C T UBP1 3'UTR 0.13 TCGA-BR-6452-01 3 33725942 33725942 C T CLASP2 Missense_Mutation p.D185N 0.09 deleterious(0.02) benign(0.074) TCGA-BR-6452-01 3 33866819 33866819 A T PDCD6IP Missense_Mutation p.L201F 0.19 tolerated(0.54) benign(0.056) TCGA-BR-6452-01 3 33905536 33905536 C A PDCD6IP Missense_Mutation p.P725H 0.09 deleterious(0) probably_damaging(0.912) TCGA-BR-6452-01 3 36422210 36422210 G A STAC Silent p.P25P 0.42 TCGA-BR-6452-01 3 36779103 36779103 C T DCLK3 Missense_Mutation p.A350T 0.16 tolerated(0.27) benign(0.01) TCGA-BR-6452-01 3 36872603 36872603 A G TRANK1 Missense_Mutation p.L2780P 0.06 deleterious(0.02) probably_damaging(0.987) TCGA-BR-6452-01 3 36893684 36893684 G A TRANK1 Nonsense_Mutation p.R1524* 0.19 TCGA-BR-6452-01 3 36897426 36897427 - A TRANK1 Frame_Shift_Ins p.L1219Sfs*25 0.10 TCGA-BR-6452-01 3 37034495 37034495 C T EPM2AIP1 Missense_Mutation p.R25H 0.16 deleterious(0.03) possibly_damaging(0.781) TCGA-BR-6452-01 3 37095362 37095362 C T LRRFIP2 Missense_Mutation p.A716T 0.09 deleterious(0.03) possibly_damaging(0.688) TCGA-BR-6452-01 3 37107356 37107356 A G LRRFIP2 Silent p.T548T 0.09 TCGA-BR-6452-01 3 37845374 37845374 G A ITGA9 Missense_Mutation p.A984T 0.09 tolerated(0.08) probably_damaging(0.999) TCGA-BR-6452-01 3 38153716 38153716 T C DLEC1 Missense_Mutation p.M1177T 0.11 deleterious(0) benign(0.438) TCGA-BR-6452-01 3 38173487 38173487 C T ACAA1 Silent p.P111P 0.13 TCGA-BR-6452-01 3 38182880 38182880 C G MYD88 3'UTR 0.24 TCGA-BR-6452-01 3 38292940 38292940 C T OXSR1 Silent p.V474V 0.11 TCGA-BR-6452-01 3 38415972 38415972 A T XYLB Missense_Mutation p.R289S 0.12 tolerated(0.35) benign(0.007) TCGA-BR-6452-01 3 38523762 38523762 G A ACVR2B Missense_Mutation p.R383H 0.17 deleterious(0) probably_damaging(0.962) TCGA-BR-6452-01 3 38591817 38591817 C T SCN5A Missense_Mutation p.V2016M 0.19 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BR-6452-01 3 38596019 38596019 A T SCN5A Missense_Mutation p.F1522I 0.08 deleterious(0.01) benign(0.248) TCGA-BR-6452-01 3 38649682 38649682 T C SCN5A Missense_Mutation p.T320A 0.08 tolerated(0.49) probably_damaging(0.995) TCGA-BR-6452-01 3 38738885 38738886 - T SCN10A Frame_Shift_Ins p.N1942Kfs*2 0.11 TCGA-BR-6452-01 3 38753796 38753796 A G SCN10A Silent p.D1315D 0.07 TCGA-BR-6452-01 3 38798267 38798267 G C SCN10A Silent p.V396V 0.18 TCGA-BR-6452-01 3 38798323 38798324 - A SCN10A Frame_Shift_Ins p.V378Cfs*24 0.10 TCGA-BR-6452-01 3 3887314 3887314 G A LRRN1 Missense_Mutation p.R330H 0.21 deleterious(0.02) benign(0.006) TCGA-BR-6452-01 3 3887411 3887411 T A LRRN1 Missense_Mutation p.N362K 0.07 tolerated(0.07) possibly_damaging(0.71) TCGA-BR-6452-01 3 38908837 38908837 T A SCN11A Missense_Mutation p.D1309V 0.08 deleterious(0.01) probably_damaging(1) TCGA-BR-6452-01 3 39144266 39144266 A G GORASP1 Missense_Mutation p.V84A 0.21 deleterious(0.01) probably_damaging(0.989) TCGA-BR-6452-01 3 39162487 39162488 GT - TTC21A Splice_Site p.X309_splice 0.19 TCGA-BR-6452-01 3 39228564 39228564 G A XIRP1 Silent p.L791L 0.15 TCGA-BR-6452-01 3 39230238 39230238 C A XIRP1 Missense_Mutation p.K233N 0.07 deleterious(0) probably_damaging(0.986) TCGA-BR-6452-01 3 39433000 39433000 C T SLC25A38 Silent p.F115F 0.19 TCGA-BR-6452-01 3 40456320 40456320 A G ENTPD3 Missense_Mutation p.N196D 0.09 deleterious(0.01) probably_damaging(0.995) TCGA-BR-6452-01 3 41266654 41266654 C - CTNNB1 Frame_Shift_Del p.R151Vfs*6 0.17 TCGA-BR-6452-01 3 41607557 41607557 A G ULK4 Missense_Mutation p.V1062A 0.08 deleterious(0.01) possibly_damaging(0.77) TCGA-BR-6452-01 3 42577688 42577688 G A VIPR1 Missense_Mutation p.C430Y 0.24 tolerated(1) benign(0.197) TCGA-BR-6452-01 3 42679032 42679032 C T NKTR Silent p.D612D 0.24 TCGA-BR-6452-01 3 42917312 42917312 T C CYP8B1 5'UTR 0.13 TCGA-BR-6452-01 3 42956105 42956105 T C ZNF662 Silent p.G206G 0.08 TCGA-BR-6452-01 3 43389110 43389110 G A SNRK Silent p.E453E 0.17 TCGA-BR-6452-01 3 44492863 44492863 C - ZNF445 Frame_Shift_Del p.D181Tfs*9 0.10 TCGA-BR-6452-01 3 44541791 44541791 G A ZNF852 Nonsense_Mutation p.R160* 0.11 TCGA-BR-6452-01 3 44685375 44685375 T G ZNF197 Missense_Mutation p.V918G 0.06 deleterious(0.03) possibly_damaging(0.659) TCGA-BR-6452-01 3 44692631 44692631 A G ZNF35 Silent p.E24E 0.21 TCGA-BR-6452-01 3 44701410 44701410 C T ZNF35 Nonsense_Mutation p.R519* 0.12 TCGA-BR-6452-01 3 45049052 45049053 - T EXOSC7 Frame_Shift_Ins p.E254Rfs*56 0.15 TCGA-BR-6452-01 3 4558230 4558230 G A ITPR1 Missense_Mutation p.A19T 0.07 tolerated(0.1) probably_damaging(0.999) TCGA-BR-6452-01 3 45972594 45972594 T C FYCO1 Missense_Mutation p.E1407G 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-BR-6452-01 3 46008779 46008779 C G FYCO1 Missense_Mutation p.A683P 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-BR-6452-01 3 46399365 46399365 T A CCR2 Missense_Mutation p.F116Y 0.08 deleterious(0) benign(0.296) TCGA-BR-6452-01 3 46484968 46484968 C T LTF Missense_Mutation p.S540N 0.18 tolerated(0.31) benign(0.041) TCGA-BR-6452-01 3 46729723 46729723 C T ALS2CL Missense_Mutation p.S56N 0.12 tolerated(0.22) benign(0.009) TCGA-BR-6452-01 3 4687267 4687267 G A ITPR1 Missense_Mutation p.G237D 0.10 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 3 47037074 47037074 G A NBEAL2 Missense_Mutation p.A617T 0.12 tolerated(0.58) benign(0.005) TCGA-BR-6452-01 3 47043945 47043945 G A NBEAL2 Missense_Mutation p.D1746N 0.13 deleterious(0) possibly_damaging(0.688) TCGA-BR-6452-01 3 4715020 4715020 T C ITPR1 Missense_Mutation p.V787A 0.09 deleterious(0) probably_damaging(0.986) TCGA-BR-6452-01 3 47454597 47454597 G A PTPN23 Silent p.G1611G 0.09 TCGA-BR-6452-01 3 47454675 47454675 A G PTPN23 Nonstop_Mutation p.*1637Wext*77 0.06 TCGA-BR-6452-01 3 47456380 47456380 G A SCAP Silent p.P1081P 0.10 TCGA-BR-6452-01 3 47618517 47618517 G - CSPG5 Frame_Shift_Del p.G334Afs*60 0.18 TCGA-BR-6452-01 3 47618735 47618735 C T CSPG5 Missense_Mutation p.D261N 0.27 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 3 47787474 47787474 A G SMARCC1 Missense_Mutation p.F109L 0.10 deleterious(0.01) possibly_damaging(0.902) TCGA-BR-6452-01 3 47870546 47870546 C T DHX30 Silent p.S96S 0.09 TCGA-BR-6452-01 3 47889772 47889772 C T DHX30 Nonsense_Mutation p.R797* 0.09 TCGA-BR-6452-01 3 47890735 47890735 C A DHX30 Missense_Mutation p.P995T 0.10 tolerated(0.37) benign(0.055) TCGA-BR-6452-01 3 48200451 48200451 C T CDC25A Missense_Mutation p.R520H 0.18 deleterious(0.01) benign(0.117) TCGA-BR-6452-01 3 48266137 48266137 G T CAMP Missense_Mutation p.R121S 0.08 tolerated(0.61) benign(0.022) TCGA-BR-6452-01 3 48336637 48336637 G A NME6 Missense_Mutation p.R116C 0.13 deleterious(0.01) probably_damaging(0.96) TCGA-BR-6452-01 3 48456404 48456404 C T PLXNB1 Missense_Mutation p.R1338H 0.13 tolerated(0.64) benign(0.015) TCGA-BR-6452-01 3 48615911 48615911 C T COL7A1 Missense_Mutation p.G1821D 0.11 unknown(0) TCGA-BR-6452-01 3 48658279 48658279 C T TMEM89 Missense_Mutation p.G159E 0.06 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BR-6452-01 3 48697789 48697789 T A CELSR3 Missense_Mutation p.E760V 0.09 tolerated(0.39) probably_damaging(0.999) TCGA-BR-6452-01 3 48717233 48717233 C T NCKIPSD Splice_Site p.X450_splice 0.08 TCGA-BR-6452-01 3 48725700 48725700 G A IP6K2 3'UTR 0.16 TCGA-BR-6452-01 3 48964946 48964946 G A ARIH2 5'UTR 0.15 TCGA-BR-6452-01 3 49049542 49049542 C T WDR6 Missense_Mutation p.A222V 0.16 tolerated(0.12) benign(0.047) TCGA-BR-6452-01 3 49148577 49148577 A G USP19 Silent p.G1115G 0.11 TCGA-BR-6452-01 3 49148735 49148735 A C USP19 Missense_Mutation p.I1092S 0.10 deleterious(0) probably_damaging(0.972) TCGA-BR-6452-01 3 49159770 49159770 A G LAMB2 Missense_Mutation p.V1536A 0.08 deleterious(0) probably_damaging(0.997) TCGA-BR-6452-01 3 49201174 49201174 A G CCDC71 Silent p.G156G 0.18 TCGA-BR-6452-01 3 49293631 49293631 A C CCDC36 Missense_Mutation p.Q234P 0.12 deleterious(0) probably_damaging(0.964) TCGA-BR-6452-01 3 49693164 49693164 C T BSN Missense_Mutation p.R2059W 0.07 unknown(0) TCGA-BR-6452-01 3 49698225 49698225 A T BSN Missense_Mutation p.I2983F 0.12 unknown(0) TCGA-BR-6452-01 3 49721785 49721785 A G MST1 Missense_Mutation p.C660R 0.13 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 3 49737739 49737739 A C RNF123 Missense_Mutation p.Q355P 0.09 tolerated(0.23) benign(0.001) TCGA-BR-6452-01 3 49740860 49740860 A G RNF123 Missense_Mutation p.E584G 0.19 tolerated(0.26) benign(0.004) TCGA-BR-6452-01 3 49755433 49755433 C T AMIGO3 Missense_Mutation p.G489D 0.10 tolerated(1) benign(0.001) TCGA-BR-6452-01 3 49755718 49755718 C T AMIGO3 Missense_Mutation p.G394D 0.13 deleterious(0.03) possibly_damaging(0.663) TCGA-BR-6452-01 3 49756426 49756426 G A AMIGO3 Missense_Mutation p.A158V 0.10 tolerated(0.14) benign(0.011) TCGA-BR-6452-01 3 50098595 50098595 G T RBM6 Missense_Mutation p.R765M 0.11 deleterious(0.04) possibly_damaging(0.77) TCGA-BR-6452-01 3 50220395 50220395 G A SEMA3F Missense_Mutation p.R321Q 0.17 deleterious(0) probably_damaging(0.937) TCGA-BR-6452-01 3 50330205 50330205 G - IFRD2 5'Flank 0.14 TCGA-BR-6452-01 3 50334959 50334959 C T NAT6 Splice_Site p.X1_splice 0.19 TCGA-BR-6452-01 3 50385278 50385278 A T NPRL2 Nonsense_Mutation p.Y329* 0.07 TCGA-BR-6452-01 3 50645243 50645243 G A CISH Missense_Mutation p.A208V 0.18 tolerated(0.18) benign(0.003) TCGA-BR-6452-01 3 51101984 51101984 G A DOCK3 Missense_Mutation p.E141K 0.08 tolerated(0.07) benign(0.427) TCGA-BR-6452-01 3 51352414 51352414 A G DOCK3 Missense_Mutation p.E1086G 0.11 deleterious(0) benign(0.37) TCGA-BR-6452-01 3 51352435 51352435 C T DOCK3 Missense_Mutation p.P1093L 0.15 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 3 51352488 51352488 C T DOCK3 Missense_Mutation p.R1111W 0.14 deleterious(0) probably_damaging(0.994) TCGA-BR-6452-01 3 51376458 51376458 A G DOCK3 Silent p.T1255T 0.15 TCGA-BR-6452-01 3 51393879 51393879 C T DOCK3 Silent p.S1486S 0.09 TCGA-BR-6452-01 3 51417604 51417604 C - DOCK3 Frame_Shift_Del p.P1852Qfs*45 0.51 TCGA-BR-6452-01 3 52255388 52255388 G A TLR9 Missense_Mutation p.R1136W 0.13 deleterious(0) probably_damaging(0.972) TCGA-BR-6452-01 3 52256541 52256541 A G TLR9 Silent p.S751S 0.10 TCGA-BR-6452-01 3 52257218 52257218 G A TLR9 Missense_Mutation p.H526Y 0.07 deleterious(0.05) benign(0.005) TCGA-BR-6452-01 3 52257565 52257565 C T TLR9 Missense_Mutation p.R410H 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-BR-6452-01 3 52383021 52383021 A T DNAH1 Missense_Mutation p.I742F 0.08 benign(0.017) TCGA-BR-6452-01 3 52403902 52403902 G A DNAH1 Missense_Mutation p.R2002H 0.10 probably_damaging(0.994) TCGA-BR-6452-01 3 52429663 52429663 A T DNAH1 Missense_Mutation p.E3743V 0.12 probably_damaging(0.993) TCGA-BR-6452-01 3 52486162 52486162 A G TNNC1 Silent p.P54P 0.07 TCGA-BR-6452-01 3 52504925 52504925 T C NISCH Splice_Site p.X137_splice 0.06 TCGA-BR-6452-01 3 52556242 52556242 G A STAB1 Missense_Mutation p.G2154D 0.08 deleterious(0) probably_damaging(0.997) TCGA-BR-6452-01 3 52643740 52643740 T C PBRM1 Missense_Mutation p.Q719R 0.11 deleterious(0) benign(0.121) TCGA-BR-6452-01 3 52745664 52745664 C T NEK4 3'UTR 0.12 TCGA-BR-6452-01 3 52745874 52745874 C T NEK4 Silent p.R815R 0.08 TCGA-BR-6452-01 3 52833437 52833437 T C ITIH3 Missense_Mutation p.V280A 0.08 tolerated(0.77) benign(0.003) TCGA-BR-6452-01 3 52867330 52867330 C T TMEM110-MUSTN1 3'UTR 0.14 TCGA-BR-6452-01 3 52877754 52877754 C T TMEM110 Missense_Mutation p.V201I 0.11 tolerated(0.32) probably_damaging(0.928) TCGA-BR-6452-01 3 53700410 53700410 A G CACNA1D Missense_Mutation p.N322D 0.09 tolerated(0.1) benign(0.364) TCGA-BR-6452-01 3 53757947 53757947 G A CACNA1D Missense_Mutation p.G694D 0.10 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 3 53766931 53766932 - A CACNA1D Frame_Shift_Ins p.I877Nfs*6 0.08 TCGA-BR-6452-01 3 53892801 53892801 T C IL17RB Missense_Mutation p.V268A 0.11 deleterious(0.01) possibly_damaging(0.725) TCGA-BR-6452-01 3 53902862 53902862 T A ACTR8 Nonsense_Mutation p.K587* 0.12 TCGA-BR-6452-01 3 54157558 54157558 G A CACNA2D3 Silent p.S47S 0.17 TCGA-BR-6452-01 3 54958982 54958982 C T LRTM1 Missense_Mutation p.A90T 0.15 tolerated(0.15) benign(0.284) TCGA-BR-6452-01 3 54961995 54961995 G A LRTM1 5'UTR 0.07 TCGA-BR-6452-01 3 56114985 56114985 C T ERC2 Missense_Mutation p.E501K 0.12 deleterious(0) probably_damaging(0.992) TCGA-BR-6452-01 3 56657354 56657354 T A FAM208A 3'UTR 0.08 TCGA-BR-6452-01 3 57107810 57107810 G A SPATA12 Missense_Mutation p.V30I 0.17 tolerated_low_confidence(0.42) benign(0.001) TCGA-BR-6452-01 3 57148726 57148726 C - IL17RD Frame_Shift_Del p.A102Pfs*7 0.10 TCGA-BR-6452-01 3 57232257 57232257 T C HESX1 Missense_Mutation p.K176E 0.21 deleterious(0.01) benign(0.076) TCGA-BR-6452-01 3 57274552 57274552 T C APPL1 Silent p.I115I 0.12 TCGA-BR-6452-01 3 57312659 57312659 C T ASB14 Missense_Mutation p.A393T 0.10 deleterious(0) probably_damaging(0.994) TCGA-BR-6452-01 3 58104628 58104628 T C FLNB Silent p.G925G 0.08 TCGA-BR-6452-01 3 58196668 58196668 A G DNASE1L3 Intron 0.17 TCGA-BR-6452-01 3 58395860 58395860 C T PXK Missense_Mutation p.A480V 0.10 tolerated(0.53) benign(0.001) TCGA-BR-6452-01 3 58502969 58502969 G A ACOX2 Missense_Mutation p.A605V 0.09 tolerated(1) benign(0.042) TCGA-BR-6452-01 3 62262706 62262706 A G PTPRG Missense_Mutation p.N1207D 0.10 deleterious(0.01) probably_damaging(0.997) TCGA-BR-6452-01 3 63466614 63466614 C T SYNPR Missense_Mutation p.A64V 0.09 tolerated(0.17) benign(0.202) TCGA-BR-6452-01 3 64184539 64184539 C A PRICKLE2 Missense_Mutation p.R22M 0.33 deleterious(0) probably_damaging(0.997) TCGA-BR-6452-01 3 64589923 64589923 G A ADAMTS9 Nonsense_Mutation p.R1187* 0.18 TCGA-BR-6452-01 3 65416466 65416466 G A MAGI1 Missense_Mutation p.T485M 0.08 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 3 66430685 66430685 A C LRIG1 3'UTR 0.12 TCGA-BR-6452-01 3 66434438 66434438 G T LRIG1 Missense_Mutation p.A683D 0.11 deleterious(0) probably_damaging(0.997) TCGA-BR-6452-01 3 66467619 66467619 A C LRIG1 Missense_Mutation p.L146R 0.05 deleterious(0) probably_damaging(0.971) TCGA-BR-6452-01 3 67054650 67054650 G A KBTBD8 Missense_Mutation p.C420Y 0.09 tolerated(0.14) possibly_damaging(0.884) TCGA-BR-6452-01 3 67426240 67426240 T C SUCLG2 Intron 0.11 TCGA-BR-6452-01 3 6903101 6903101 G A GRM7 Missense_Mutation p.R9H 0.21 tolerated_low_confidence(0.31) benign(0) TCGA-BR-6452-01 3 69168050 69168050 G A LMOD3 Missense_Mutation p.R486W 0.09 deleterious(0) possibly_damaging(0.776) TCGA-BR-6452-01 3 69928327 69928327 C A MITF Missense_Mutation p.S49R 0.09 tolerated(0.65) possibly_damaging(0.663) TCGA-BR-6452-01 3 71015100 71015100 C A FOXP1 Missense_Mutation p.M612I 0.11 deleterious(0.03) benign(0.13) TCGA-BR-6452-01 3 73047252 73047252 A T PPP4R2 Missense_Mutation p.E20V 0.10 deleterious(0) possibly_damaging(0.771) TCGA-BR-6452-01 3 73432638 73432638 T C PDZRN3 Missense_Mutation p.K1027E 0.06 deleterious(0) probably_damaging(0.983) TCGA-BR-6452-01 3 74420395 74420395 T G CNTN3 Missense_Mutation p.N204H 0.35 deleterious(0.03) possibly_damaging(0.59) TCGA-BR-6452-01 3 77530337 77530337 A G ROBO2 Missense_Mutation p.R228G 0.07 deleterious(0) possibly_damaging(0.647) TCGA-BR-6452-01 3 77684140 77684140 G T ROBO2 Missense_Mutation p.G1310W 0.09 deleterious_low_confidence(0.01) probably_damaging(0.965) TCGA-BR-6452-01 3 7782054 7782054 A - GRM7 Frame_Shift_Del p.K905Rfs*56 0.12 TCGA-BR-6452-01 3 78763600 78763600 A G ROBO1 Missense_Mutation p.V331A 0.16 deleterious(0) probably_damaging(0.963) TCGA-BR-6452-01 3 8590426 8590426 A G LMCD1 Missense_Mutation p.K187R 0.10 tolerated(0.14) benign(0.249) TCGA-BR-6452-01 3 87313466 87313466 A G POU1F1 Silent p.N163N 0.08 TCGA-BR-6452-01 3 8794893 8794893 C T OXTR Missense_Mutation p.V314I 0.09 deleterious(0.05) benign(0.025) TCGA-BR-6452-01 3 88188521 88188521 A - ZNF654 Frame_Shift_Del p.G23Afs*6 0.26 TCGA-BR-6452-01 3 88205231 88205231 T C C3orf38 Missense_Mutation p.C146R 0.09 deleterious(0) probably_damaging(0.997) TCGA-BR-6452-01 3 89391057 89391057 C T EPHA3 Missense_Mutation p.P375S 0.15 tolerated(0.18) possibly_damaging(0.681) TCGA-BR-6452-01 3 89498434 89498434 G A EPHA3 Silent p.T802T 0.12 TCGA-BR-6452-01 3 89499363 89499363 C - EPHA3 Frame_Shift_Del p.M847Wfs*10 0.11 TCGA-BR-6452-01 3 93733654 93733654 T C STX19 Missense_Mutation p.T154A 0.08 tolerated(1) benign(0.002) TCGA-BR-6452-01 3 93772155 93772155 A G ARL13B 3'UTR 0.16 TCGA-BR-6452-01 3 93782010 93782010 T C DHFRL1 5'UTR 0.06 TCGA-BR-6452-01 3 96945107 96945107 G A EPHA6 Splice_Site p.X372_splice 0.08 TCGA-BR-6452-01 3 97251327 97251327 A G EPHA6 Missense_Mutation p.S776G 0.18 deleterious(0.03) probably_damaging(0.994) TCGA-BR-6452-01 3 97596328 97596328 A T CRYBG3 Missense_Mutation p.D149V 0.07 deleterious(0) possibly_damaging(0.89) TCGA-BR-6452-01 3 97680537 97680537 T A MINA Missense_Mutation p.I150F 0.10 deleterious(0) probably_damaging(0.918) TCGA-BR-6452-01 3 97868324 97868324 T C OR5H14 Missense_Mutation p.L32S 0.06 tolerated(0.08) possibly_damaging(0.45) TCGA-BR-6452-01 3 97983222 97983222 G T OR5H6 Nonsense_Mutation p.G32* 0.08 TCGA-BR-6452-01 3 97983483 97983483 T C OR5H6 Missense_Mutation p.S119P 0.09 tolerated(0.07) benign(0.03) TCGA-BR-6452-01 3 98002053 98002053 T C OR5H2 Missense_Mutation p.S108P 0.07 tolerated(0.06) benign(0.021) TCGA-BR-6452-01 3 98217044 98217044 A G OR5K2 Missense_Mutation p.I174V 0.08 tolerated(0.06) benign(0.341) TCGA-BR-6452-01 3 98510729 98510729 G A ST3GAL6 Silent p.A267A 0.08 TCGA-BR-6452-01 3 98518401 98518401 A G DCBLD2 Missense_Mutation p.Y715H 0.10 tolerated(0.22) benign(0.02) TCGA-BR-6452-01 3 99514755 99514755 G - COL8A1 Frame_Shift_Del p.G672Afs*14 0.17 TCGA-BR-6452-01 3 99567352 99567352 A G FILIP1L Silent p.T1056T 0.10 TCGA-BR-6452-01 3 99568036 99568036 A G FILIP1L Silent p.Y828Y 0.12 TCGA-BR-6452-01 3 9991568 9991568 C T PRRT3 Missense_Mutation p.A78T 0.08 tolerated_low_confidence(0.47) benign(0.009) TCGA-BR-6452-01 4 100341722 100341722 T C ADH7 Missense_Mutation p.T285A 0.11 tolerated(0.38) benign(0.045) TCGA-BR-6452-01 4 100522814 100522814 G A MTTP Missense_Mutation p.M429I 0.07 tolerated(0.39) benign(0.004) TCGA-BR-6452-01 4 101108899 101108899 C A DDIT4L Nonsense_Mutation p.G173* 0.24 TCGA-BR-6452-01 4 101108907 101108907 A G DDIT4L Missense_Mutation p.L170P 0.08 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 4 101108927 101108927 A C DDIT4L Silent p.G163G 0.08 TCGA-BR-6452-01 4 101108948 101108948 A G DDIT4L Silent p.S156S 0.08 TCGA-BR-6452-01 4 101111182 101111182 C A DDIT4L 5'UTR 0.10 TCGA-BR-6452-01 4 103189225 103189225 T - SLC39A8 Frame_Shift_Del p.E285Sfs*8 0.10 TCGA-BR-6452-01 4 103500181 103500181 G A NFKB1 Missense_Mutation p.A239T 0.24 deleterious(0.01) possibly_damaging(0.622) TCGA-BR-6452-01 4 103501757 103501757 G T NFKB1 Missense_Mutation p.G266W 0.08 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 4 103514652 103514652 T C NFKB1 Silent p.S379S 0.09 TCGA-BR-6452-01 4 103527752 103527752 T G NFKB1 Missense_Mutation p.S618A 0.09 deleterious(0.01) probably_damaging(0.92) TCGA-BR-6452-01 4 103595084 103595084 G T MANBA Silent p.T368T 0.09 TCGA-BR-6452-01 4 104080340 104080340 A G CENPE Missense_Mutation p.S810P 0.08 benign(0.116) TCGA-BR-6452-01 4 104106977 104106977 T C CENPE Silent p.T245T 0.09 TCGA-BR-6452-01 4 10447359 10447359 A G ZNF518B Silent p.G198G 0.08 TCGA-BR-6452-01 4 104577457 104577457 A C TACR3 Missense_Mutation p.L261R 0.08 deleterious(0.01) possibly_damaging(0.906) TCGA-BR-6452-01 4 106155657 106155657 G A TET2 Silent p.E186E 0.14 TCGA-BR-6452-01 4 106156631 106156631 A G TET2 Missense_Mutation p.H511R 0.10 tolerated(0.18) benign(0.001) TCGA-BR-6452-01 4 106613138 106613138 T - INTS12 Frame_Shift_Del p.R218Efs*20 0.31 TCGA-BR-6452-01 4 1067437 1067437 G A RNF212 Missense_Mutation p.A175V 0.36 tolerated(0.16) benign(0.09) TCGA-BR-6452-01 4 106848532 106848532 G A NPNT Missense_Mutation p.G71E 0.14 deleterious(0) benign(0.314) TCGA-BR-6452-01 4 106861286 106861286 T C NPNT Missense_Mutation p.V217A 0.22 deleterious(0) benign(0.047) TCGA-BR-6452-01 4 108566127 108566127 C T PAPSS1 Missense_Mutation p.R446H 0.18 tolerated(0.23) benign(0.056) TCGA-BR-6452-01 4 108954337 108954337 G A HADH Missense_Mutation p.A256T 0.09 deleterious(0) probably_damaging(0.986) TCGA-BR-6452-01 4 110223192 110223192 G A COL25A1 5'UTR 0.17 TCGA-BR-6452-01 4 110427546 110427546 A G SEC24B Silent p.P517P 0.08 TCGA-BR-6452-01 4 110685814 110685814 T C CFI Missense_Mutation p.T121A 0.10 tolerated(0.41) benign(0.012) TCGA-BR-6452-01 4 110925696 110925696 C A EGF Missense_Mutation p.P1070H 0.09 tolerated(0.08) benign(0.411) TCGA-BR-6452-01 4 111474605 111474605 T C ENPEP Missense_Mutation p.V879A 0.07 deleterious(0.04) possibly_damaging(0.654) TCGA-BR-6452-01 4 113353667 113353667 G A ALPK1 Silent p.R988R 0.07 TCGA-BR-6452-01 4 113362087 113362087 A G ALPK1 Missense_Mutation p.N1185D 0.07 tolerated(0.26) benign(0.12) TCGA-BR-6452-01 4 113538885 113538886 - T C4orf21 Frame_Shift_Ins p.H772Afs*13 0.12 TCGA-BR-6452-01 4 113569359 113569359 C G LARP7 Intron 0.10 TCGA-BR-6452-01 4 114280116 114280116 A G ANK2 Missense_Mutation p.S3448G 0.09 benign(0.016) TCGA-BR-6452-01 4 114294255 114294255 A G ANK2 Missense_Mutation p.M3874V 0.11 benign(0.03) TCGA-BR-6452-01 4 114473243 114473243 T C CAMK2D Silent p.G95G 0.10 TCGA-BR-6452-01 4 118005579 118005579 A G TRAM1L1 Missense_Mutation p.V324A 0.07 tolerated(0.06) benign(0.001) TCGA-BR-6452-01 4 119631199 119631199 A G METTL14 Silent p.A371A 0.17 TCGA-BR-6452-01 4 119644736 119644736 G A SEC24D Silent p.Y1011Y 0.19 TCGA-BR-6452-01 4 119686061 119686061 A G SEC24D Missense_Mutation p.Y398H 0.07 deleterious(0) probably_damaging(0.992) TCGA-BR-6452-01 4 120107215 120107215 T G MYOZ2 Missense_Mutation p.F219V 0.08 tolerated(0.22) benign(0.135) TCGA-BR-6452-01 4 121719441 121719441 A T PRDM5 Missense_Mutation p.V390D 0.12 tolerated(0.25) probably_damaging(0.978) TCGA-BR-6452-01 4 121742449 121742449 C G PRDM5 Missense_Mutation p.E118Q 0.13 deleterious(0.01) possibly_damaging(0.697) TCGA-BR-6452-01 4 121957507 121957507 G A NDNF Missense_Mutation p.S540F 0.08 tolerated(0.07) possibly_damaging(0.571) TCGA-BR-6452-01 4 123145659 123145659 C - KIAA1109 Frame_Shift_Del p.P875Lfs*18 0.28 TCGA-BR-6452-01 4 123229282 123229282 G A KIAA1109 Silent p.L3340L 0.07 TCGA-BR-6452-01 4 123254921 123254921 A G KIAA1109 Missense_Mutation p.D3868G 0.09 benign(0.187) TCGA-BR-6452-01 4 123257435 123257435 T A KIAA1109 Missense_Mutation p.S3979R 0.10 probably_damaging(0.986) TCGA-BR-6452-01 4 123302219 123302219 T A ADAD1 Missense_Mutation p.I82K 0.12 tolerated(0.74) benign(0.066) TCGA-BR-6452-01 4 123838694 123838694 C T NUDT6 Missense_Mutation p.R135K 0.10 tolerated(0.22) probably_damaging(0.952) TCGA-BR-6452-01 4 123843587 123843587 C A NUDT6 Missense_Mutation p.Q47H 0.09 deleterious(0.05) benign(0.135) TCGA-BR-6452-01 4 125590911 125590911 C T ANKRD50 Missense_Mutation p.R1174Q 0.25 deleterious(0.03) benign(0.289) TCGA-BR-6452-01 4 125591412 125591412 G T ANKRD50 Missense_Mutation p.A1007D 0.10 deleterious(0) probably_damaging(0.97) TCGA-BR-6452-01 4 126239682 126239682 A G FAT4 Missense_Mutation p.S706G 0.08 possibly_damaging(0.723) TCGA-BR-6452-01 4 126371457 126371457 G A FAT4 Missense_Mutation p.A3096T 0.09 benign(0.012) TCGA-BR-6452-01 4 126373323 126373323 G A FAT4 Missense_Mutation p.G3718S 0.09 benign(0.001) TCGA-BR-6452-01 4 126411099 126411099 A C FAT4 Missense_Mutation p.E4374D 0.19 probably_damaging(0.996) TCGA-BR-6452-01 4 126412663 126412663 C T FAT4 Missense_Mutation p.R4896C 0.24 possibly_damaging(0.77) TCGA-BR-6452-01 4 128584698 128584698 T C INTU Missense_Mutation p.Y311H 0.10 deleterious(0) probably_damaging(0.923) TCGA-BR-6452-01 4 128627710 128627710 A G INTU Silent p.G619G 0.08 TCGA-BR-6452-01 4 129920859 129920859 G A SCLT1 Nonsense_Mutation p.Q173* 0.18 TCGA-BR-6452-01 4 1333015 1333015 G A MAEA 3'UTR 0.21 TCGA-BR-6452-01 4 134071888 134071888 G A PCDH10 Missense_Mutation p.R198H 0.10 tolerated(0.13) possibly_damaging(0.847) TCGA-BR-6452-01 4 13590398 13590398 T C BOD1L1 Missense_Mutation p.K2743R 0.16 benign(0.08) TCGA-BR-6452-01 4 13603610 13603610 G A BOD1L1 Silent p.I1638I 0.18 TCGA-BR-6452-01 4 1389092 1389092 C T CRIPAK Missense_Mutation p.P265S 0.08 tolerated(0.13) benign(0.07) TCGA-BR-6452-01 4 139103485 139103485 C T SLC7A11 Missense_Mutation p.R361H 0.10 tolerated(0.12) benign(0.013) TCGA-BR-6452-01 4 140641423 140641423 C T MAML3 Missense_Mutation p.R824Q 0.11 probably_damaging(0.997) TCGA-BR-6452-01 4 140811420 140811420 C T MAML3 Silent p.T390T 0.09 TCGA-BR-6452-01 4 140811851 140811851 C A MAML3 Missense_Mutation p.G247C 0.15 probably_damaging(1) TCGA-BR-6452-01 4 141310438 141310438 G A CLGN Silent p.S591S 0.09 TCGA-BR-6452-01 4 141313502 141313502 T - CLGN Frame_Shift_Del p.T508Pfs*12 0.23 TCGA-BR-6452-01 4 141321662 141321662 T C CLGN Silent p.G181G 0.10 TCGA-BR-6452-01 4 142053845 142053845 A G RNF150 Missense_Mutation p.Y40H 0.30 deleterious(0.04) probably_damaging(0.996) TCGA-BR-6452-01 4 143067143 143067143 C T INPP4B Missense_Mutation p.V524M 0.10 tolerated(0.06) probably_damaging(0.974) TCGA-BR-6452-01 4 144127279 144127279 A G USP38 Missense_Mutation p.R435G 0.12 deleterious(0.02) benign(0.071) TCGA-BR-6452-01 4 144468578 144468578 G A SMARCA5 Silent p.E898E 0.08 TCGA-BR-6452-01 4 146065564 146065564 G T OTUD4 Missense_Mutation p.A417D 0.22 deleterious(0.01) benign(0.394) TCGA-BR-6452-01 4 146468016 146468016 C T SMAD1 Silent p.L313L 0.08 TCGA-BR-6452-01 4 146475083 146475083 T - SMAD1 Frame_Shift_Del p.F383Lfs*14 0.21 TCGA-BR-6452-01 4 147560286 147560286 C T POU4F2 5'UTR 0.11 TCGA-BR-6452-01 4 147561990 147561990 T C POU4F2 3'UTR 0.10 TCGA-BR-6452-01 4 148803060 148803060 T C ARHGAP10 Silent p.C337C 0.08 TCGA-BR-6452-01 4 148993239 148993239 G A ARHGAP10 3'UTR 0.11 TCGA-BR-6452-01 4 15018811 15018811 G A CPEB2 Splice_Site p.X679_splice 0.08 TCGA-BR-6452-01 4 151504543 151504543 G C MAB21L2 Missense_Mutation p.G121A 0.10 deleterious(0.01) probably_damaging(0.992) TCGA-BR-6452-01 4 152065098 152065098 G A SH3D19 Silent p.I472I 0.09 TCGA-BR-6452-01 4 153690946 153690946 G T TIGD4 Missense_Mutation p.A404D 0.11 tolerated(0.15) possibly_damaging(0.907) TCGA-BR-6452-01 4 153896633 153896633 T C FHDC1 Silent p.D730D 0.16 TCGA-BR-6452-01 4 154191569 154191569 C A TRIM2 Missense_Mutation p.P38H 0.07 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-BR-6452-01 4 154216755 154216755 C T TRIM2 Silent p.G359G 0.20 TCGA-BR-6452-01 4 154508908 154508908 T G KIAA0922 Silent p.G499G 0.07 TCGA-BR-6452-01 4 154624623 154624623 C T TLR2 Silent p.S188S 0.07 TCGA-BR-6452-01 4 154625730 154625730 T C TLR2 Silent p.D557D 0.11 TCGA-BR-6452-01 4 155156833 155156833 C T DCHS2 Missense_Mutation p.A2536T 0.23 tolerated(0.19) benign(0.013) TCGA-BR-6452-01 4 155157336 155157336 T A DCHS2 Missense_Mutation p.D2368V 0.10 deleterious(0) possibly_damaging(0.459) TCGA-BR-6452-01 4 155509977 155509977 T C FGA Missense_Mutation p.E111G 0.09 deleterious(0.04) possibly_damaging(0.605) TCGA-BR-6452-01 4 155510666 155510666 G A FGA Missense_Mutation p.R35C 0.09 deleterious(0) possibly_damaging(0.689) TCGA-BR-6452-01 4 156625120 156625120 G A GUCY1A3 Missense_Mutation p.A98T 0.07 tolerated(0.24) benign(0.007) TCGA-BR-6452-01 4 156632185 156632185 T A GUCY1A3 Missense_Mutation p.F290I 0.17 tolerated(0.15) benign(0.034) TCGA-BR-6452-01 4 156723547 156723547 G A GUCY1B3 Missense_Mutation p.R410H 0.25 deleterious(0) benign(0.093) TCGA-BR-6452-01 4 159640370 159640370 A G PPID Missense_Mutation p.Y99H 0.15 deleterious(0.01) probably_damaging(1) TCGA-BR-6452-01 4 15964183 15964183 G - FGFBP2 Frame_Shift_Del p.R191Gfs*36 0.11 TCGA-BR-6452-01 4 15964674 15964674 C A FGFBP2 Nonsense_Mutation p.G27* 0.09 TCGA-BR-6452-01 4 15994012 15994012 A G PROM1 Silent p.H590H 0.07 TCGA-BR-6452-01 4 160252876 160252876 C A RAPGEF2 Missense_Mutation p.P396H 0.27 deleterious(0.05) probably_damaging(0.985) TCGA-BR-6452-01 4 160264153 160264153 G A RAPGEF2 Missense_Mutation p.A820T 0.29 tolerated(0.08) benign(0.264) TCGA-BR-6452-01 4 16188435 16188435 T C TAPT1 Missense_Mutation p.K272R 0.10 deleterious(0.03) probably_damaging(0.968) TCGA-BR-6452-01 4 164246392 164246392 T C NPY1R 3'UTR 0.15 TCGA-BR-6452-01 4 164393149 164393149 C T TKTL2 Missense_Mutation p.V580I 0.27 tolerated(0.16) benign(0.069) TCGA-BR-6452-01 4 16504153 16504153 A T LDB2 3'UTR 0.19 TCGA-BR-6452-01 4 16504260 16504260 A T LDB2 3'UTR 0.07 TCGA-BR-6452-01 4 16504355 16504355 C T LDB2 Missense_Mutation p.A345T 0.22 tolerated(0.23) benign(0.004) TCGA-BR-6452-01 4 166232671 166232671 T A KLHL2 Silent p.A435A 0.13 TCGA-BR-6452-01 4 166418824 166418824 T - CPE 3'UTR 0.28 TCGA-BR-6452-01 4 166924671 166924671 G A TLL1 Missense_Mutation p.R254K 0.12 deleterious(0) probably_damaging(0.989) TCGA-BR-6452-01 4 167655903 167655903 T C SPOCK3 3'UTR 0.12 TCGA-BR-6452-01 4 167656082 167656082 A G SPOCK3 Missense_Mutation p.V434A 0.15 tolerated_low_confidence(0.33) unknown(0) TCGA-BR-6452-01 4 167675702 167675702 T A SPOCK3 Missense_Mutation p.L299F 0.11 tolerated(0.77) benign(0.178) TCGA-BR-6452-01 4 169099117 169099117 A G ANXA10 Missense_Mutation p.Y204C 0.12 tolerated(0.1) probably_damaging(0.946) TCGA-BR-6452-01 4 169176911 169176911 C T DDX60 Missense_Mutation p.A1170T 0.10 tolerated(0.64) benign(0.003) TCGA-BR-6452-01 4 169176992 169176992 C T DDX60 Missense_Mutation p.A1143T 0.24 deleterious(0.02) probably_damaging(1) TCGA-BR-6452-01 4 169232511 169232511 G A DDX60 5'UTR 0.12 TCGA-BR-6452-01 4 169294923 169294923 A G DDX60L Missense_Mutation p.V1557A 0.09 tolerated(0.3) benign(0.034) TCGA-BR-6452-01 4 169433123 169433123 G A PALLD Silent p.T156T 0.21 TCGA-BR-6452-01 4 170613350 170613350 C A CLCN3 Missense_Mutation p.A272D 0.11 deleterious(0.02) possibly_damaging(0.699) TCGA-BR-6452-01 4 170663209 170663209 T C C4orf27 Missense_Mutation p.N183D 0.10 tolerated(0.43) benign(0.005) TCGA-BR-6452-01 4 171010811 171010811 T C AADAT Missense_Mutation p.S11G 0.09 deleterious(0.04) possibly_damaging(0.543) TCGA-BR-6452-01 4 177036998 177036998 A - WDR17 Frame_Shift_Del p.T85Qfs*23 0.16 TCGA-BR-6452-01 4 177071675 177071675 T C WDR17 Silent p.D769D 0.09 TCGA-BR-6452-01 4 177100788 177100788 G A WDR17 3'UTR 0.10 TCGA-BR-6452-01 4 17805232 17805232 C T DCAF16 Missense_Mutation p.C178Y 0.12 tolerated_low_confidence(1) possibly_damaging(0.588) TCGA-BR-6452-01 4 17805389 17805389 T C DCAF16 Missense_Mutation p.K126E 0.09 deleterious_low_confidence(0.03) possibly_damaging(0.801) TCGA-BR-6452-01 4 183575044 183575044 A G TENM3 Missense_Mutation p.N370S 0.08 tolerated(0.67) benign(0) TCGA-BR-6452-01 4 184585014 184585014 C T TRAPPC11 5'UTR 0.22 TCGA-BR-6452-01 4 185309962 185309962 C T IRF2 Missense_Mutation p.V334I 0.20 deleterious(0) probably_damaging(0.979) TCGA-BR-6452-01 4 185329430 185329430 C T IRF2 Splice_Site p.X138_splice 0.08 TCGA-BR-6452-01 4 185340707 185340707 G A IRF2 Nonsense_Mutation p.Q35* 0.18 TCGA-BR-6452-01 4 185593326 185593326 G T PRIMPOL Splice_Site p.X186_splice 0.08 TCGA-BR-6452-01 4 186065961 186065961 A G SLC25A4 Missense_Mutation p.K52R 0.10 deleterious(0.03) probably_damaging(0.976) TCGA-BR-6452-01 4 186253808 186253808 A C SNX25 Missense_Mutation p.E439D 0.10 tolerated(0.36) benign(0.007) TCGA-BR-6452-01 4 186288198 186288198 C T LRP2BP 3'UTR 0.19 TCGA-BR-6452-01 4 186366585 186366585 A G CCDC110 3'UTR 0.12 TCGA-BR-6452-01 4 186382236 186382236 A T CCDC110 Missense_Mutation p.N105K 0.08 tolerated(0.25) possibly_damaging(0.474) TCGA-BR-6452-01 4 186423424 186423424 C T PDLIM3 3'UTR 0.24 TCGA-BR-6452-01 4 186544479 186544479 C T SORBS2 Missense_Mutation p.A798T 0.07 deleterious(0) probably_damaging(0.998) TCGA-BR-6452-01 4 187177156 187177156 A C KLKB1 Missense_Mutation p.K500N 0.14 tolerated(0.06) possibly_damaging(0.769) TCGA-BR-6452-01 4 187521118 187521118 C T FAT1 Missense_Mutation p.A4013T 0.19 benign(0.002) TCGA-BR-6452-01 4 187524831 187524831 T C FAT1 Missense_Mutation p.T3617A 0.11 benign(0.081) TCGA-BR-6452-01 4 187627796 187627796 G A FAT1 Silent p.D1062D 0.19 TCGA-BR-6452-01 4 20521008 20521008 C T SLIT2 Silent p.V354V 0.24 TCGA-BR-6452-01 4 20525792 20525792 G A SLIT2 Missense_Mutation p.R477H 0.10 deleterious(0) probably_damaging(0.997) TCGA-BR-6452-01 4 20884319 20884319 A G KCNIP4 Silent p.A25A 0.09 TCGA-BR-6452-01 4 2194956 2194956 A - POLN Frame_Shift_Del p.F332Lfs*14 0.24 TCGA-BR-6452-01 4 22422418 22422418 T A GPR125 Intron 0.10 TCGA-BR-6452-01 4 2242244 2242246 CTT - HAUS3 In_Frame_Del p.E143del 0.19 TCGA-BR-6452-01 4 2242749 2242749 A - HAUS3 5'UTR 0.23 TCGA-BR-6452-01 4 22463404 22463404 A G GPR125 Silent p.S119S 0.09 TCGA-BR-6452-01 4 22737695 22737695 T C GBA3 Silent p.D50D 0.12 TCGA-BR-6452-01 4 24550530 24550530 C T DHX15 Missense_Mutation p.R399H 0.11 deleterious(0) probably_damaging(0.96) TCGA-BR-6452-01 4 24556472 24556472 A G DHX15 Missense_Mutation p.V319A 0.11 deleterious(0) probably_damaging(0.997) TCGA-BR-6452-01 4 25146678 25146678 T C SEPSECS Missense_Mutation p.I294M 0.16 deleterious(0) probably_damaging(0.946) TCGA-BR-6452-01 4 26638843 26638843 A - TBC1D19 Frame_Shift_Del p.R104Efs*3 0.18 TCGA-BR-6452-01 4 27010471 27010471 G A STIM2 Missense_Mutation p.A454T 0.12 tolerated(0.07) possibly_damaging(0.65) TCGA-BR-6452-01 4 2834759 2834759 T C SH3BP2 Missense_Mutation p.Y568H 0.10 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-BR-6452-01 4 2886334 2886334 G A ADD1 Missense_Mutation p.A151T 0.11 deleterious(0.02) probably_damaging(0.999) TCGA-BR-6452-01 4 3037113 3037113 T C GRK4 Silent p.L424L 0.12 TCGA-BR-6452-01 4 30725086 30725086 A G PCDH7 Missense_Mutation p.N681S 0.10 tolerated(0.21) benign(0.012) TCGA-BR-6452-01 4 30732444 30732444 A G PCDH7 Intron 0.09 TCGA-BR-6452-01 4 3148604 3148604 C T HTT Missense_Mutation p.S1075L 0.09 benign(0.234) TCGA-BR-6452-01 4 3318001 3318001 C T RGS12 Missense_Mutation p.T35M 0.10 deleterious(0) probably_damaging(0.976) TCGA-BR-6452-01 4 3526647 3526647 T C LRPAP1 Missense_Mutation p.I112M 0.06 tolerated(0.11) benign(0.014) TCGA-BR-6452-01 4 36149198 36149198 T A ARAP2 Missense_Mutation p.R1057S 0.08 tolerated(0.22) benign(0.016) TCGA-BR-6452-01 4 36161111 36161111 A G ARAP2 Missense_Mutation p.V820A 0.08 deleterious(0) probably_damaging(0.985) TCGA-BR-6452-01 4 3769612 3769612 T C ADRA2C Missense_Mutation p.Y427H 0.10 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 4 38776589 38776589 C T TLR10 Missense_Mutation p.R208H 0.13 tolerated(0.5) benign(0.001) TCGA-BR-6452-01 4 38798650 38798650 G A TLR1 Silent p.C601C 0.10 TCGA-BR-6452-01 4 38829466 38829467 - T TLR6 Frame_Shift_Ins p.N543Kfs*8 0.09 TCGA-BR-6452-01 4 39064525 39064525 G A KLHL5 Missense_Mutation p.A131T 0.29 tolerated_low_confidence(0.53) benign(0.058) TCGA-BR-6452-01 4 39083781 39083781 T C KLHL5 Splice_Site p.X346_splice 0.10 TCGA-BR-6452-01 4 39297264 39297264 A G RFC1 Missense_Mutation p.V976A 0.11 tolerated(0.38) benign(0.02) TCGA-BR-6452-01 4 39843614 39843614 A C PDS5A Missense_Mutation p.I1204S 0.10 tolerated_low_confidence(0.52) benign(0.001) TCGA-BR-6452-01 4 40123127 40123127 A T N4BP2 Missense_Mutation p.L1132F 0.07 deleterious(0) probably_damaging(0.959) TCGA-BR-6452-01 4 42065102 42065102 A T SLC30A9 Silent p.G332G 0.10 TCGA-BR-6452-01 4 42069122 42069122 A G SLC30A9 Missense_Mutation p.S389G 0.06 deleterious(0) benign(0.302) TCGA-BR-6452-01 4 420896 420896 A C ABCA11P Intron 0.16 TCGA-BR-6452-01 4 42895339 42895339 G A GRXCR1 Missense_Mutation p.R19Q 0.10 deleterious(0.05) probably_damaging(0.996) TCGA-BR-6452-01 4 42964999 42964999 G A GRXCR1 Missense_Mutation p.V159I 0.11 deleterious(0.01) probably_damaging(0.996) TCGA-BR-6452-01 4 437167 437167 G A ZNF721 Silent p.C363C 0.14 TCGA-BR-6452-01 4 44450344 44450344 G A KCTD8 Missense_Mutation p.P66L 0.23 deleterious(0.03) probably_damaging(0.985) TCGA-BR-6452-01 4 44719209 44719210 - T GNPDA2 Frame_Shift_Ins p.N110Kfs*10 0.19 TCGA-BR-6452-01 4 46252449 46252449 A G GABRA2 Missense_Mutation p.F411S 0.07 deleterious(0.03) possibly_damaging(0.906) TCGA-BR-6452-01 4 46334631 46334631 C T GABRA2 Splice_Site p.X85_splice 0.16 TCGA-BR-6452-01 4 47427976 47427976 T - GABRB1 Frame_Shift_Del p.F457Sfs*27 0.17 TCGA-BR-6452-01 4 47663845 47663845 A G CORIN Missense_Mutation p.C540R 0.14 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 4 47695094 47695094 C T CORIN Missense_Mutation p.C269Y 0.24 deleterious(0) probably_damaging(0.971) TCGA-BR-6452-01 4 47939244 47939244 A G CNGA1 Missense_Mutation p.F492L 0.07 tolerated(0.21) benign(0.061) TCGA-BR-6452-01 4 48147163 48147163 C T TEC Missense_Mutation p.S468N 0.12 tolerated(0.16) benign(0.345) TCGA-BR-6452-01 4 48542963 48542963 T C FRYL Missense_Mutation p.D1901G 0.10 tolerated(0.09) benign(0.263) TCGA-BR-6452-01 4 48859353 48859353 C A OCIAD1 Missense_Mutation p.P224H 0.12 tolerated(0.3) possibly_damaging(0.797) TCGA-BR-6452-01 4 52758003 52758003 A G DCUN1D4 Silent p.G164G 0.12 TCGA-BR-6452-01 4 52861789 52861789 C A LRRC66 Missense_Mutation p.A467S 0.12 tolerated(0.32) benign(0.077) TCGA-BR-6452-01 4 52945916 52945916 A C SPATA18 Missense_Mutation p.I396L 0.08 deleterious(0.03) benign(0.063) TCGA-BR-6452-01 4 54440034 54440034 G A LNX1 Nonsense_Mutation p.Q46* 0.14 TCGA-BR-6452-01 4 55565802 55565802 A T KIT Missense_Mutation p.K209I 0.08 tolerated(0.08) possibly_damaging(0.817) TCGA-BR-6452-01 4 55972863 55972863 T C KDR Silent p.G509G 0.13 TCGA-BR-6452-01 4 5624510 5624510 C T EVC2 Missense_Mutation p.R752Q 0.21 tolerated(0.05) probably_damaging(0.93) TCGA-BR-6452-01 4 56730485 56730485 G A EXOC1 Nonsense_Mutation p.W116* 0.18 TCGA-BR-6452-01 4 57269249 57269249 T C PPAT Silent p.L206L 0.14 TCGA-BR-6452-01 4 57384867 57384867 T A ARL9 Missense_Mutation p.S14T 0.08 tolerated(0.37) possibly_damaging(0.609) TCGA-BR-6452-01 4 57389893 57389893 A T ARL9 Missense_Mutation p.I75F 0.11 deleterious(0.01) probably_damaging(1) TCGA-BR-6452-01 4 5754593 5754593 C T EVC Missense_Mutation p.H377Y 0.20 tolerated(0.75) benign(0.025) TCGA-BR-6452-01 4 57897134 57897134 C T POLR2B Missense_Mutation p.P1169S 0.16 deleterious(0.03) probably_damaging(1) TCGA-BR-6452-01 4 6083425 6083425 G A JAKMIP1 Missense_Mutation p.R338W 0.19 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 4 6303480 6303480 G A WFS1 Missense_Mutation p.R653H 0.08 tolerated(0.21) probably_damaging(0.972) TCGA-BR-6452-01 4 6303751 6303751 C T WFS1 Silent p.S743S 0.23 TCGA-BR-6452-01 4 6380273 6380273 G A PPP2R2C Silent p.G65G 0.17 TCGA-BR-6452-01 4 66535289 66535289 T G EPHA5 Missense_Mutation p.S58R 0.30 tolerated(0.31) benign(0.021) TCGA-BR-6452-01 4 6826332 6826332 G A KIAA0232 Missense_Mutation p.G51D 0.10 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 4 68355753 68355753 A - CENPC Frame_Shift_Del p.S868Lfs*5 0.14 TCGA-BR-6452-01 4 68385053 68385053 T - CENPC Frame_Shift_Del p.T167Hfs*24 0.08 TCGA-BR-6452-01 4 68610386 68610386 G T GNRHR Missense_Mutation p.F214L 0.21 tolerated(0.1) benign(0.039) TCGA-BR-6452-01 4 68610404 68610404 T G GNRHR Missense_Mutation p.Q208H 0.23 deleterious(0.03) possibly_damaging(0.819) TCGA-BR-6452-01 4 68619626 68619626 A T GNRHR Missense_Mutation p.I143N 0.15 deleterious(0) possibly_damaging(0.903) TCGA-BR-6452-01 4 6863906 6863906 T C KIAA0232 Silent p.G599G 0.07 TCGA-BR-6452-01 4 68928328 68928328 A G TMPRSS11F Intron 0.09 TCGA-BR-6452-01 4 69185860 69185861 - G YTHDC1 Frame_Shift_Ins p.E556* 0.18 TCGA-BR-6452-01 4 7011616 7011616 C T TBC1D14 Missense_Mutation p.H487Y 0.06 tolerated(0.24) benign(0.291) TCGA-BR-6452-01 4 7056629 7056629 A G TADA2B Missense_Mutation p.T371A 0.08 deleterious(0) benign(0.064) TCGA-BR-6452-01 4 7064145 7064145 T C GRPEL1 Missense_Mutation p.S92G 0.07 deleterious(0.02) benign(0.014) TCGA-BR-6452-01 4 71201519 71201519 G A CABS1 Missense_Mutation p.A255T 0.13 tolerated(0.77) benign(0.001) TCGA-BR-6452-01 4 71508727 71508727 A G ENAM Silent p.P528P 0.19 TCGA-BR-6452-01 4 71634299 71634299 C T RUFY3 Missense_Mutation p.A206V 0.08 tolerated(0.38) benign(0.302) TCGA-BR-6452-01 4 72363287 72363287 G A SLC4A4 Missense_Mutation p.V682I 0.27 tolerated(0.07) benign(0.01) TCGA-BR-6452-01 4 72429508 72429508 A G SLC4A4 Intron 0.10 TCGA-BR-6452-01 4 72994607 72994607 C A NPFFR2 Missense_Mutation p.P202H 0.07 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 4 731294 731294 A G PCGF3 Silent p.V82V 0.10 TCGA-BR-6452-01 4 73943171 73943171 T C ANKRD17 Silent p.Q2496Q 0.10 TCGA-BR-6452-01 4 73956669 73956669 T A ANKRD17 Missense_Mutation p.T2226S 0.05 benign(0.001) TCGA-BR-6452-01 4 73957601 73957601 C T ANKRD17 Missense_Mutation p.G1915D 0.12 possibly_damaging(0.584) TCGA-BR-6452-01 4 73957799 73957799 G A ANKRD17 Missense_Mutation p.A1849V 0.10 benign(0.005) TCGA-BR-6452-01 4 74005463 74005463 G A ANKRD17 Missense_Mutation p.A957V 0.08 possibly_damaging(0.544) TCGA-BR-6452-01 4 74005740 74005740 T A ANKRD17 Missense_Mutation p.I865F 0.09 possibly_damaging(0.58) TCGA-BR-6452-01 4 7435600 7435600 C A PSAPL1 Missense_Mutation p.C336F 0.07 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 4 74357801 74357801 G A AFM Silent p.A352A 0.28 TCGA-BR-6452-01 4 76407668 76407668 C T RCHY1 3'UTR 0.10 TCGA-BR-6452-01 4 76452318 76452318 G T THAP6 Missense_Mutation p.R188M 0.08 deleterious(0.02) possibly_damaging(0.864) TCGA-BR-6452-01 4 76582913 76582913 T A G3BP2 Missense_Mutation p.D60V 0.09 deleterious(0) benign(0.005) TCGA-BR-6452-01 4 76731585 76731585 G A USO1 Missense_Mutation p.A835T 0.18 tolerated(0.6) benign(0.001) TCGA-BR-6452-01 4 76734383 76734383 T A USO1 Missense_Mutation p.S951T 0.12 tolerated_low_confidence(0.21) benign(0.294) TCGA-BR-6452-01 4 77003397 77003397 A G ART3 Missense_Mutation p.T164A 0.09 tolerated(0.74) benign(0.02) TCGA-BR-6452-01 4 77057529 77057529 G A NUP54 Missense_Mutation p.P111L 0.16 tolerated(0.13) benign(0.212) TCGA-BR-6452-01 4 77817430 77817430 G A SOWAHB Missense_Mutation p.R525C 0.19 deleterious(0.03) possibly_damaging(0.689) TCGA-BR-6452-01 4 7788020 7788020 A G AFAP1 Silent p.V477V 0.09 TCGA-BR-6452-01 4 77926846 77926846 C T SEPT11 Missense_Mutation p.R79W 0.08 deleterious(0.01) possibly_damaging(0.849) TCGA-BR-6452-01 4 7795484 7795484 G A AFAP1 Missense_Mutation p.P446S 0.07 deleterious(0) probably_damaging(0.988) TCGA-BR-6452-01 4 7840356 7840356 C T AFAP1 Silent p.P207P 0.16 TCGA-BR-6452-01 4 79258953 79258953 C A FRAS1 Missense_Mutation p.L802I 0.11 benign(0.019) TCGA-BR-6452-01 4 79367983 79367983 G A FRAS1 Missense_Mutation p.D1987N 0.14 probably_damaging(1) TCGA-BR-6452-01 4 81967100 81967100 C T BMP3 Silent p.N175N 0.23 TCGA-BR-6452-01 4 81967414 81967414 C T BMP3 Missense_Mutation p.A280V 0.13 tolerated(0.12) benign(0.009) TCGA-BR-6452-01 4 82096046 82096046 T G PRKG2 Missense_Mutation p.I177L 0.08 tolerated(0.08) benign(0.004) TCGA-BR-6452-01 4 8229515 8229515 G A SH3TC1 Silent p.S698S 0.21 TCGA-BR-6452-01 4 8233870 8233870 C A SH3TC1 Missense_Mutation p.L1040M 0.22 deleterious(0.01) probably_damaging(1) TCGA-BR-6452-01 4 8307843 8307843 G A HTRA3 Missense_Mutation p.A448T 0.25 tolerated(1) benign(0.006) TCGA-BR-6452-01 4 83348623 83348623 A - HNRNPDL Frame_Shift_Del p.L290Cfs*2 0.17 TCGA-BR-6452-01 4 83378162 83378162 A G ENOPH1 Missense_Mutation p.N206S 0.13 tolerated(0.13) benign(0.067) TCGA-BR-6452-01 4 83582013 83582013 A G SCD5 Intron 0.08 TCGA-BR-6452-01 4 84240519 84240520 - T HPSE Frame_Shift_Ins p.F160Vfs*44 0.09 TCGA-BR-6452-01 4 84379541 84379541 T C MRPS18C Missense_Mutation p.C65R 0.09 deleterious(0) possibly_damaging(0.881) TCGA-BR-6452-01 4 85612938 85612938 T C WDFY3 Missense_Mutation p.E3017G 0.15 deleterious(0) probably_damaging(0.922) TCGA-BR-6452-01 4 85657439 85657439 G A WDFY3 Missense_Mutation p.P2267S 0.09 tolerated(0.43) benign(0.005) TCGA-BR-6452-01 4 85658471 85658471 A T WDFY3 Missense_Mutation p.I2208K 0.12 deleterious(0) benign(0.342) TCGA-BR-6452-01 4 85687073 85687073 A G WDFY3 Missense_Mutation p.V1693A 0.10 tolerated(0.15) benign(0.05) TCGA-BR-6452-01 4 85707196 85707196 G A WDFY3 Missense_Mutation p.S1333F 0.09 tolerated(0.7) benign(0.007) TCGA-BR-6452-01 4 85716121 85716121 A - WDFY3 Frame_Shift_Del p.L1060Cfs*41 0.14 TCGA-BR-6452-01 4 86916261 86916261 G A ARHGAP24 Missense_Mutation p.G485D 0.08 tolerated(0.2) possibly_damaging(0.887) TCGA-BR-6452-01 4 86916682 86916682 T C ARHGAP24 Silent p.S625S 0.08 TCGA-BR-6452-01 4 87690974 87690974 T - PTPN13 Frame_Shift_Del p.S1521Lfs*15 0.21 TCGA-BR-6452-01 4 87694086 87694086 A G PTPN13 Missense_Mutation p.E1780G 0.10 tolerated(0.19) benign(0.003) TCGA-BR-6452-01 4 87809323 87809323 C T C4orf36 Silent p.Q57Q 0.09 TCGA-BR-6452-01 4 88055677 88055677 A G AFF1 Silent p.V1122V 0.06 TCGA-BR-6452-01 4 88394950 88394950 T C SPARCL1 Missense_Mutation p.I658V 0.08 tolerated(0.06) benign(0.01) TCGA-BR-6452-01 4 88535299 88535299 T C DSPP Silent p.S495S 0.22 TCGA-BR-6452-01 4 88732887 88732888 - G IBSP Frame_Shift_Ins p.E262Gfs*9 0.11 TCGA-BR-6452-01 4 89384765 89384765 A G HERC5 Silent p.L257L 0.08 TCGA-BR-6452-01 4 89668866 89668866 C T FAM13A Silent p.K766K 0.08 TCGA-BR-6452-01 4 90034768 90034768 G A TIGD2 Missense_Mutation p.A215T 0.24 deleterious(0.04) benign(0.418) TCGA-BR-6452-01 4 945436 945436 C T TMEM175 Intron 0.22 TCGA-BR-6452-01 4 94690472 94690472 C T GRID2 Silent p.G824G 0.11 TCGA-BR-6452-01 4 949616 949616 C T TMEM175 Silent p.R260R 0.14 TCGA-BR-6452-01 4 95162126 95162126 A T SMARCAD1 Missense_Mutation p.D225V 0.10 tolerated(0.11) benign(0.117) TCGA-BR-6452-01 4 95174135 95174135 C T SMARCAD1 Missense_Mutation p.P420S 0.08 deleterious(0) probably_damaging(0.995) TCGA-BR-6452-01 4 95575695 95575695 T C PDLIM5 Silent p.I485I 0.08 TCGA-BR-6452-01 4 96025677 96025677 C T BMPR1B Silent p.C64C 0.15 TCGA-BR-6452-01 4 96035907 96035907 T C BMPR1B Silent p.D90D 0.24 TCGA-BR-6452-01 4 96761865 96761865 T C PDHA2 Silent p.C188C 0.11 TCGA-BR-6452-01 4 985234 985234 C A SLC26A1 Missense_Mutation p.Q86H 0.10 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 4 99264305 99264305 A - RAP1GDS1 Frame_Shift_Del p.I46Sfs*14 0.12 TCGA-BR-6452-01 4 99969899 99969899 G A METAP1 Missense_Mutation p.R268Q 0.22 tolerated(0.25) probably_damaging(0.992) TCGA-BR-6452-01 5 101606335 101606335 G A SLCO4C1 Silent p.L265L 0.25 TCGA-BR-6452-01 5 101627089 101627089 G A SLCO4C1 Nonsense_Mutation p.Q193* 0.11 TCGA-BR-6452-01 5 101774410 101774410 T C SLCO6A1 Missense_Mutation p.Y396C 0.34 tolerated(0.07) benign(0.016) TCGA-BR-6452-01 5 102509634 102509634 A G PPIP5K2 Silent p.V829V 0.08 TCGA-BR-6452-01 5 10464976 10464976 G A ROPN1L Missense_Mutation p.G204S 0.23 deleterious(0.01) possibly_damaging(0.602) TCGA-BR-6452-01 5 106763092 106763092 C T EFNA5 Missense_Mutation p.V82M 0.09 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 5 1074698 1074698 G - SLC12A7 Frame_Shift_Del p.H686Tfs*11 0.19 TCGA-BR-6452-01 5 108290576 108290576 T C FER Silent p.Y492Y 0.10 TCGA-BR-6452-01 5 109049437 109049437 T C MAN2A1 Missense_Mutation p.F118L 0.12 tolerated(0.12) benign(0.312) TCGA-BR-6452-01 5 10992687 10992687 G A CTNND2 Missense_Mutation p.R1063C 0.10 deleterious(0) probably_damaging(0.99) TCGA-BR-6452-01 5 110428317 110428320 GTGA - WDR36 Splice_Site p.X110_splice 0.28 TCGA-BR-6452-01 5 110712562 110712562 A G CAMK4 Missense_Mutation p.K103R 0.12 tolerated(0.18) benign(0.021) TCGA-BR-6452-01 5 111500719 111500719 T C EPB41L4A Missense_Mutation p.I677V 0.10 tolerated_low_confidence(1) benign(0) TCGA-BR-6452-01 5 112178940 112178940 A T APC Missense_Mutation p.E2550V 0.09 probably_damaging(1) TCGA-BR-6452-01 5 112200164 112200164 A G SRP19 Missense_Mutation p.N43S 0.14 deleterious(0.04) benign(0.325) TCGA-BR-6452-01 5 112406914 112406914 T C MCC Missense_Mutation p.K601R 0.10 tolerated(0.58) probably_damaging(0.979) TCGA-BR-6452-01 5 113822749 113822749 A - KCNN2 Frame_Shift_Del p.N421Mfs*12 0.18 TCGA-BR-6452-01 5 11411702 11411702 T G CTNND2 Silent p.R129R 0.22 TCGA-BR-6452-01 5 114548274 114548274 A G PGGT1B Missense_Mutation p.L320S 0.11 deleterious(0) probably_damaging(0.995) TCGA-BR-6452-01 5 115177087 115177087 T - ATG12 Frame_Shift_Del p.I55Lfs*5 0.28 TCGA-BR-6452-01 5 115782800 115782800 C T SEMA6A Missense_Mutation p.V868M 0.07 tolerated(0.27) benign(0.344) TCGA-BR-6452-01 5 115818216 115818217 - A SEMA6A Frame_Shift_Ins p.T340Yfs*11 0.11 TCGA-BR-6452-01 5 121409723 121409723 A G LOX Silent p.C340C 0.08 TCGA-BR-6452-01 5 121786643 121786643 C T SNCAIP Missense_Mutation p.P701S 0.15 deleterious(0.05) probably_damaging(0.999) TCGA-BR-6452-01 5 122926221 122926221 A T CSNK1G3 Missense_Mutation p.D320V 0.08 deleterious(0) probably_damaging(0.997) TCGA-BR-6452-01 5 123982525 123982525 C A ZNF608 Missense_Mutation p.Q1184H 0.08 tolerated(0.12) probably_damaging(0.996) TCGA-BR-6452-01 5 123984764 123984764 G A ZNF608 Missense_Mutation p.A438V 0.21 tolerated(0.22) probably_damaging(0.992) TCGA-BR-6452-01 5 124080611 124080611 A G ZNF608 Silent p.D24D 0.09 TCGA-BR-6452-01 5 125805413 125805413 A G GRAMD3 Missense_Mutation p.N98S 0.09 tolerated(0.61) benign(0.004) TCGA-BR-6452-01 5 126206470 126206470 T C MARCH3 Missense_Mutation p.Y206C 0.09 deleterious(0) probably_damaging(0.966) TCGA-BR-6452-01 5 126783362 126783362 A T MEGF10 Missense_Mutation p.M948L 0.10 tolerated(0.38) benign(0) TCGA-BR-6452-01 5 126792986 126792988 CAA - MEGF10 In_Frame_Del p.N1134del 0.22 TCGA-BR-6452-01 5 127520484 127520484 T C SLC12A2 Missense_Mutation p.Y1147H 0.10 tolerated(0.52) benign(0.003) TCGA-BR-6452-01 5 128448716 128448716 C T ISOC1 3'UTR 0.13 TCGA-BR-6452-01 5 129001264 129001264 G A ADAMTS19 Missense_Mutation p.S827N 0.15 tolerated(0.27) probably_damaging(0.961) TCGA-BR-6452-01 5 129243849 129243849 T C CHSY3 Silent p.I294I 0.13 TCGA-BR-6452-01 5 131042175 131042175 A G FNIP1 Silent p.C281C 0.08 TCGA-BR-6452-01 5 131892985 131892985 G T RAD50 5'UTR 0.09 TCGA-BR-6452-01 5 131976465 131976465 A G RAD50 Silent p.E1240E 0.07 TCGA-BR-6452-01 5 132159772 132159773 - C SHROOM1 Frame_Shift_Ins p.T528Hfs*12 0.26 TCGA-BR-6452-01 5 132232641 132232641 T C AFF4 Missense_Mutation p.T561A 0.07 deleterious(0.03) probably_damaging(0.994) TCGA-BR-6452-01 5 132412488 132412488 A T HSPA4 Missense_Mutation p.E269V 0.11 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 5 133726150 133726150 A - UBE2B 3'UTR 0.33 TCGA-BR-6452-01 5 134130617 134130617 G T DDX46 Missense_Mutation p.E568D 0.07 deleterious(0.02) probably_damaging(0.922) TCGA-BR-6452-01 5 134303734 134303734 T C CATSPER3 Missense_Mutation p.V18A 0.07 tolerated(0.12) benign(0.024) TCGA-BR-6452-01 5 134681658 134681658 C T H2AFY Missense_Mutation p.A260T 0.17 deleterious(0.03) probably_damaging(0.993) TCGA-BR-6452-01 5 135207269 135207269 G A SLC25A48 Intron 0.11 TCGA-BR-6452-01 5 135692301 135692301 A G TRPC7 Missense_Mutation p.F259L 0.14 deleterious(0) probably_damaging(0.913) TCGA-BR-6452-01 5 13735943 13735943 C A DNAH5 Missense_Mutation p.D3852Y 0.23 possibly_damaging(0.861) TCGA-BR-6452-01 5 137454523 137454523 T C NME5 Missense_Mutation p.K180R 0.17 tolerated(0.08) probably_damaging(0.914) TCGA-BR-6452-01 5 137492899 137492899 A G BRD8 Intron 0.08 TCGA-BR-6452-01 5 137492939 137492939 T C BRD8 Intron 0.08 TCGA-BR-6452-01 5 137500695 137500695 A G BRD8 Missense_Mutation p.V480A 0.09 tolerated(0.12) possibly_damaging(0.474) TCGA-BR-6452-01 5 13759025 13759025 T C DNAH5 Missense_Mutation p.E3450G 0.05 possibly_damaging(0.728) TCGA-BR-6452-01 5 137593531 137593531 G A GFRA3 Silent p.H194H 0.19 TCGA-BR-6452-01 5 137665314 137665314 C T CDC25C Missense_Mutation p.D73N 0.10 deleterious(0.02) benign(0.204) TCGA-BR-6452-01 5 137677511 137677511 A G FAM53C Missense_Mutation p.H31R 0.16 tolerated(0.66) possibly_damaging(0.702) TCGA-BR-6452-01 5 137721747 137721749 AAG - KDM3B In_Frame_Del p.K275del 0.14 TCGA-BR-6452-01 5 137844390 137844390 G A ETF1 Missense_Mutation p.S400F 0.13 tolerated(0.2) probably_damaging(0.978) TCGA-BR-6452-01 5 13811930 13811930 A C DNAH5 Silent p.G2411G 0.10 TCGA-BR-6452-01 5 138282992 138282992 T C SIL1 Silent p.T400T 0.11 TCGA-BR-6452-01 5 138658651 138658651 A T MATR3 Nonsense_Mutation p.K715* 0.10 TCGA-BR-6452-01 5 138718265 138718265 C T SLC23A1 Silent p.P22P 0.23 TCGA-BR-6452-01 5 138723491 138723491 C A MZB1 Missense_Mutation p.C178F 0.20 deleterious(0) probably_damaging(0.995) TCGA-BR-6452-01 5 13919401 13919401 G A DNAH5 Silent p.L287L 0.13 TCGA-BR-6452-01 5 139231249 139231249 G A NRG2 Missense_Mutation p.A571V 0.11 tolerated(0.07) possibly_damaging(0.464) TCGA-BR-6452-01 5 139742516 139742516 G A SLC4A9 Missense_Mutation p.R300H 0.16 deleterious(0.04) benign(0.082) TCGA-BR-6452-01 5 139941253 139941253 G A APBB3 Silent p.S229S 0.09 TCGA-BR-6452-01 5 140176593 140176593 G A PCDHA2 Missense_Mutation p.A682T 0.10 tolerated_low_confidence(0.19) benign(0.012) TCGA-BR-6452-01 5 140176640 140176640 C T PCDHA2 Silent p.N697N 0.10 TCGA-BR-6452-01 5 140182255 140182255 C A PCDHA3 Silent p.S491S 0.07 TCGA-BR-6452-01 5 140187395 140187395 T - PCDHA4 Frame_Shift_Del p.L210* 0.32 TCGA-BR-6452-01 5 140188622 140188623 GC - PCDHA4 Frame_Shift_Del p.R619Hfs*143 0.19 TCGA-BR-6452-01 5 140202809 140202809 G A PCDHA5 Silent p.A483A 0.17 TCGA-BR-6452-01 5 140203209 140203209 G A PCDHA5 Missense_Mutation p.A617T 0.30 tolerated_low_confidence(0.19) benign(0.066) TCGA-BR-6452-01 5 140207924 140207924 T C PCDHA6 Missense_Mutation p.I83T 0.08 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-BR-6452-01 5 140214222 140214222 T C PCDHA7 Missense_Mutation p.F85S 0.08 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-BR-6452-01 5 140222879 140222879 C T PCDHA8 Missense_Mutation p.A658V 0.22 tolerated_low_confidence(0.1) benign(0.043) TCGA-BR-6452-01 5 140248964 140248964 C T PCDHA11 Silent p.R92R 0.07 TCGA-BR-6452-01 5 140249904 140249904 T C PCDHA11 Silent p.L406L 0.09 TCGA-BR-6452-01 5 140250499 140250499 C T PCDHA11 Missense_Mutation p.A604V 0.09 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-BR-6452-01 5 140250882 140250882 G A PCDHA11 Missense_Mutation p.A732T 0.29 deleterious_low_confidence(0.03) benign(0.004) TCGA-BR-6452-01 5 140256548 140256548 G A PCDHA12 Silent p.R497R 0.10 TCGA-BR-6452-01 5 140263181 140263182 - G PCDHA13 Frame_Shift_Ins p.V445Gfs*166 0.14 TCGA-BR-6452-01 5 140263955 140263955 T C PCDHA13 Missense_Mutation p.I701T 0.06 deleterious_low_confidence(0.01) possibly_damaging(0.901) TCGA-BR-6452-01 5 140431551 140431551 G A PCDHB1 Missense_Mutation p.G166S 0.11 tolerated(1) benign(0.318) TCGA-BR-6452-01 5 140433299 140433299 C A PCDHB1 Silent p.S748S 0.09 TCGA-BR-6452-01 5 140474337 140474337 C G PCDHB2 5'UTR 0.10 TCGA-BR-6452-01 5 140481490 140481490 T C PCDHB3 Silent p.I419I 0.11 TCGA-BR-6452-01 5 140501585 140501585 A G PCDHB4 Missense_Mutation p.K2R 0.24 deleterious_low_confidence(0.04) benign(0.001) TCGA-BR-6452-01 5 140515442 140515442 C T PCDHB5 Silent p.I142I 0.20 TCGA-BR-6452-01 5 140516313 140516313 G A PCDHB5 Missense_Mutation p.E433K 0.09 deleterious_low_confidence(0.02) benign(0.012) TCGA-BR-6452-01 5 140516700 140516700 T C PCDHB5 Missense_Mutation p.Y562H 0.08 deleterious_low_confidence(0.04) benign(0.199) TCGA-BR-6452-01 5 140531928 140531928 C T PCDHB6 Missense_Mutation p.S697L 0.10 deleterious(0.01) benign(0.067) TCGA-BR-6452-01 5 140536963 140536963 G A PCDHB17 Missense_Mutation p.E463K 0.11 deleterious_low_confidence(0) probably_damaging(0.923) TCGA-BR-6452-01 5 140537653 140537653 T C PCDHB17 3'UTR 0.06 TCGA-BR-6452-01 5 140553330 140553330 C T PCDHB7 Missense_Mutation p.A305V 0.09 deleterious_low_confidence(0.04) benign(0.007) TCGA-BR-6452-01 5 140554145 140554145 C - PCDHB7 Frame_Shift_Del p.R578Gfs*9 0.16 TCGA-BR-6452-01 5 140554538 140554538 G A PCDHB7 Missense_Mutation p.A708T 0.05 tolerated_low_confidence(0.07) benign(0.123) TCGA-BR-6452-01 5 140559013 140559013 C T PCDHB8 Silent p.S466S 0.11 TCGA-BR-6452-01 5 140564217 140564217 G A PCDHB16 Missense_Mutation p.A695T 0.06 deleterious_low_confidence(0.03) possibly_damaging(0.492) TCGA-BR-6452-01 5 140589857 140589857 G A PCDHB12 Missense_Mutation p.V460I 0.32 tolerated_low_confidence(0.15) benign(0.125) TCGA-BR-6452-01 5 140603685 140603685 A G PCDHB14 Missense_Mutation p.E203G 0.13 deleterious_low_confidence(0) probably_damaging(1) TCGA-BR-6452-01 5 140605248 140605248 G A PCDHB14 Missense_Mutation p.R724H 0.25 tolerated_low_confidence(0.12) benign(0.439) TCGA-BR-6452-01 5 140683297 140683297 C T SLC25A2 Missense_Mutation p.G46S 0.08 tolerated(0.28) benign(0.192) TCGA-BR-6452-01 5 140719387 140719387 A G PCDHGA2 Silent p.K283K 0.06 TCGA-BR-6452-01 5 140720359 140720359 C T PCDHGA2 Silent p.H607H 0.08 TCGA-BR-6452-01 5 140724815 140724815 G A PCDHGA3 Silent p.V405V 0.11 TCGA-BR-6452-01 5 140730650 140730650 A G PCDHGB1 Missense_Mutation p.T275A 0.11 tolerated(0.09) possibly_damaging(0.824) TCGA-BR-6452-01 5 140735028 140735028 G A PCDHGA4 Silent p.A87A 0.12 TCGA-BR-6452-01 5 140741611 140741611 G A PCDHGB2 Missense_Mutation p.A637T 0.18 tolerated(0.05) benign(0.305) TCGA-BR-6452-01 5 140745654 140745654 A G PCDHGA5 Missense_Mutation p.Y586C 0.13 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-BR-6452-01 5 140751474 140751474 G A PCDHGB3 Missense_Mutation p.V505M 0.10 deleterious(0.01) possibly_damaging(0.747) TCGA-BR-6452-01 5 140769090 140769090 C T PCDHGB4 Missense_Mutation p.R547C 0.26 deleterious(0.01) benign(0.219) TCGA-BR-6452-01 5 140773828 140773828 A G PCDHGA8 Missense_Mutation p.E483G 0.12 deleterious_low_confidence(0) benign(0.144) TCGA-BR-6452-01 5 140774055 140774055 G A PCDHGA8 Missense_Mutation p.A559T 0.12 tolerated_low_confidence(0.4) benign(0.039) TCGA-BR-6452-01 5 140799290 140799290 C T PCDHGB7 Nonsense_Mutation p.R622* 0.09 TCGA-BR-6452-01 5 140800891 140800891 C T PCDHGA11 Nonsense_Mutation p.R33* 0.09 TCGA-BR-6452-01 5 140802352 140802352 T A PCDHGA11 Missense_Mutation p.S520T 0.08 deleterious_low_confidence(0) probably_damaging(0.948) TCGA-BR-6452-01 5 140812139 140812139 T C PCDHGA12 Missense_Mutation p.S605P 0.25 deleterious_low_confidence(0) possibly_damaging(0.464) TCGA-BR-6452-01 5 140812199 140812199 G A PCDHGA12 Missense_Mutation p.E625K 0.21 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-BR-6452-01 5 140857037 140857037 G A PCDHGC3 Missense_Mutation p.D452N 0.09 deleterious(0) probably_damaging(0.972) TCGA-BR-6452-01 5 140866146 140866146 G A PCDHGC4 Missense_Mutation p.R469H 0.08 tolerated(0.12) benign(0.121) TCGA-BR-6452-01 5 141243331 141243332 AA - PCDH1 Frame_Shift_Del p.F855Wfs*35 0.22 TCGA-BR-6452-01 5 141243630 141243630 T C PCDH1 Missense_Mutation p.I756V 0.13 deleterious(0) possibly_damaging(0.756) TCGA-BR-6452-01 5 141244610 141244610 G A PCDH1 Missense_Mutation p.A429V 0.11 tolerated(0.84) benign(0.016) TCGA-BR-6452-01 5 141309634 141309635 - A KIAA0141 Frame_Shift_Ins p.E220Gfs*4 0.24 TCGA-BR-6452-01 5 141354437 141354437 C A RNF14 Missense_Mutation p.L75M 0.11 deleterious(0.03) probably_damaging(0.946) TCGA-BR-6452-01 5 143545034 143545034 T C YIPF5 Missense_Mutation p.Y82C 0.09 deleterious(0.02) benign(0.033) TCGA-BR-6452-01 5 14358294 14358294 C T TRIO Missense_Mutation p.T685M 0.11 benign(0.052) TCGA-BR-6452-01 5 145477795 145477795 C T PLAC8L1 Silent p.T60T 0.09 TCGA-BR-6452-01 5 146722576 146722576 A G STK32A Missense_Mutation p.K148E 0.09 deleterious(0.01) possibly_damaging(0.513) TCGA-BR-6452-01 5 146780384 146780384 C T DPYSL3 Silent p.Q441Q 0.16 TCGA-BR-6452-01 5 146788299 146788299 G T DPYSL3 Missense_Mutation p.P342T 0.06 deleterious(0.01) probably_damaging(1) TCGA-BR-6452-01 5 146795370 146795370 G A DPYSL3 Missense_Mutation p.A241V 0.09 deleterious(0.01) benign(0.026) TCGA-BR-6452-01 5 14681660 14681660 G A FAM105B Missense_Mutation p.A138T 0.10 tolerated(0.13) probably_damaging(0.999) TCGA-BR-6452-01 5 14711209 14711209 A - ANKH 3'UTR 0.24 TCGA-BR-6452-01 5 148206582 148206582 G A ADRB2 Missense_Mutation p.R63H 0.14 deleterious(0) benign(0.177) TCGA-BR-6452-01 5 148207139 148207139 G A ADRB2 Missense_Mutation p.E249K 0.08 tolerated(0.78) benign(0.392) TCGA-BR-6452-01 5 148420185 148420185 T C SH3TC2 Missense_Mutation p.T263A 0.09 tolerated(0.68) benign(0.005) TCGA-BR-6452-01 5 148687000 148687000 T A AFAP1L1 Missense_Mutation p.S191T 0.09 deleterious(0) probably_damaging(0.995) TCGA-BR-6452-01 5 148754010 148754010 C T IL17B Silent p.P155P 0.12 TCGA-BR-6452-01 5 149001301 149001301 A T ARHGEF37 Missense_Mutation p.Q337H 0.09 deleterious(0.02) benign(0.314) TCGA-BR-6452-01 5 149361002 149361002 G A SLC26A2 Missense_Mutation p.A616T 0.28 deleterious(0.05) benign(0.038) TCGA-BR-6452-01 5 149583563 149583563 G A SLC6A7 Missense_Mutation p.V432M 0.13 deleterious(0.02) possibly_damaging(0.582) TCGA-BR-6452-01 5 149677666 149677666 A C ARSI Missense_Mutation p.V274G 0.11 deleterious(0) probably_damaging(0.995) TCGA-BR-6452-01 5 149755412 149755412 C T TCOF1 Silent p.S611S 0.10 TCGA-BR-6452-01 5 150027979 150027979 C A SYNPO Silent p.R292R 0.07 TCGA-BR-6452-01 5 150138455 150138455 C T DCTN4 Missense_Mutation p.S34N 0.13 tolerated(0.06) benign(0.009) TCGA-BR-6452-01 5 150275987 150275987 C T ZNF300 Missense_Mutation p.V288I 0.09 tolerated(0.45) benign(0.001) TCGA-BR-6452-01 5 150704980 150704980 G A SLC36A2 Missense_Mutation p.R293C 0.08 deleterious(0) benign(0.094) TCGA-BR-6452-01 5 150887158 150887158 G A FAT2 Missense_Mutation p.A4025V 0.13 benign(0.023) TCGA-BR-6452-01 5 150922517 150922517 T C FAT2 Missense_Mutation p.Y2724C 0.09 probably_damaging(1) TCGA-BR-6452-01 5 151208616 151208616 T C GLRA1 Missense_Mutation p.K309E 0.08 deleterious(0) probably_damaging(0.953) TCGA-BR-6452-01 5 151239422 151239422 C - GLRA1 Frame_Shift_Del p.A134Pfs*13 0.09 TCGA-BR-6452-01 5 151784787 151784787 T A NMUR2 5'UTR 0.15 TCGA-BR-6452-01 5 153792469 153792469 G A GALNT10 Silent p.G469G 0.09 TCGA-BR-6452-01 5 154169932 154169932 C T LARP1 Missense_Mutation p.R85C 0.18 deleterious(0) probably_damaging(0.988) TCGA-BR-6452-01 5 154287325 154287325 G A GEMIN5 Missense_Mutation p.P741S 0.06 tolerated(0.72) benign(0.007) TCGA-BR-6452-01 5 154393675 154393675 G A KIF4B Missense_Mutation p.A86T 0.10 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 5 156514181 156514181 A G HAVCR2 Missense_Mutation p.Y280H 0.10 tolerated(0.28) benign(0.009) TCGA-BR-6452-01 5 156533902 156533902 C T HAVCR2 Missense_Mutation p.A44T 0.18 tolerated(1) benign(0.002) TCGA-BR-6452-01 5 156590270 156590270 T C FAM71B Missense_Mutation p.I336V 0.17 tolerated(0.57) benign(0.01) TCGA-BR-6452-01 5 156895765 156895765 G T NIPAL4 Missense_Mutation p.A186S 0.10 deleterious(0) possibly_damaging(0.498) TCGA-BR-6452-01 5 156920054 156920054 C T ADAM19 Missense_Mutation p.R612Q 0.23 tolerated(0.3) benign(0.052) TCGA-BR-6452-01 5 158589998 158589998 A - RNF145 Frame_Shift_Del p.F434Sfs*51 0.08 TCGA-BR-6452-01 5 158747327 158747327 G A IL12B Silent p.F228F 0.08 TCGA-BR-6452-01 5 159832114 159832114 C T SLU7 Missense_Mutation p.G439D 0.09 deleterious(0.03) probably_damaging(0.997) TCGA-BR-6452-01 5 161524661 161524662 - T GABRG2 Frame_Shift_Ins p.A118Cfs*6 0.09 TCGA-BR-6452-01 5 161580217 161580218 - T GABRG2 Frame_Shift_Ins p.C467Lfs*4 0.15 TCGA-BR-6452-01 5 162880936 162880936 A G NUDCD2 3'UTR 0.10 TCGA-BR-6452-01 5 163580 163580 C - PLEKHG4B Frame_Shift_Del p.P777Rfs*30 0.24 TCGA-BR-6452-01 5 167674382 167674382 C T TENM2 Silent p.A2146A 0.15 TCGA-BR-6452-01 5 167855037 167855037 G T WWC1 Splice_Site p.X604_splice 0.13 TCGA-BR-6452-01 5 167896000 167896001 CT - WWC1 Frame_Shift_Del p.S1115Cfs*3 0.10 TCGA-BR-6452-01 5 167957293 167957293 G A FBLL1 Missense_Mutation p.A262T 0.10 deleterious(0) probably_damaging(0.961) TCGA-BR-6452-01 5 168244401 168244401 G A SLIT3 Nonsense_Mutation p.R233* 0.25 TCGA-BR-6452-01 5 169139186 169139186 A G DOCK2 Missense_Mutation p.T540A 0.11 deleterious(0) possibly_damaging(0.793) TCGA-BR-6452-01 5 169139203 169139203 A G DOCK2 Silent p.G545G 0.12 TCGA-BR-6452-01 5 169188543 169188543 A G DOCK2 Missense_Mutation p.Y823C 0.23 deleterious(0) possibly_damaging(0.571) TCGA-BR-6452-01 5 169445980 169445980 C T DOCK2 Silent p.C1083C 0.19 TCGA-BR-6452-01 5 169675795 169675795 T A LCP2 Missense_Mutation p.D503V 0.08 deleterious(0.01) probably_damaging(0.932) TCGA-BR-6452-01 5 170669797 170669797 T A RANBP17 Missense_Mutation p.S917T 0.07 tolerated(0.32) benign(0.152) TCGA-BR-6452-01 5 170725821 170725821 G A RANBP17 Missense_Mutation p.D1076N 0.10 tolerated(0.59) benign(0.227) TCGA-BR-6452-01 5 170818392 170818392 A T NPM1 Silent p.V74V 0.07 TCGA-BR-6452-01 5 171303497 171303497 A T FBXW11 Missense_Mutation p.I317N 0.18 tolerated(0.16) benign(0.033) TCGA-BR-6452-01 5 172386991 172386991 C T RPL26L1 Missense_Mutation p.R39W 0.25 deleterious(0.02) probably_damaging(0.987) TCGA-BR-6452-01 5 172660160 172660160 G A NKX2-5 Silent p.N129N 0.42 TCGA-BR-6452-01 5 172752893 172752893 T C STC2 Missense_Mutation p.N91S 0.08 tolerated(0.3) probably_damaging(0.999) TCGA-BR-6452-01 5 173531319 173531319 G A NSG2 Missense_Mutation p.C101Y 0.31 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 5 175934054 175934054 T C FAF2 3'UTR 0.23 TCGA-BR-6452-01 5 176004773 176004773 G A CDHR2 Missense_Mutation p.G496S 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-BR-6452-01 5 176005480 176005480 C T CDHR2 Silent p.G563G 0.17 TCGA-BR-6452-01 5 176011262 176011262 T C CDHR2 Splice_Site p.X710_splice 0.08 TCGA-BR-6452-01 5 176295830 176295830 C T UNC5A Missense_Mutation p.P196S 0.11 tolerated(0.77) benign(0.034) TCGA-BR-6452-01 5 176297464 176297464 G A UNC5A Missense_Mutation p.R272H 0.12 deleterious(0.03) possibly_damaging(0.855) TCGA-BR-6452-01 5 176314586 176314586 G A HK3 Missense_Mutation p.P489L 0.08 tolerated(0.13) probably_damaging(1) TCGA-BR-6452-01 5 176562872 176562872 C T NSD1 Silent p.A256A 0.08 TCGA-BR-6452-01 5 176694615 176694615 C T NSD1 Silent p.C1733C 0.17 TCGA-BR-6452-01 5 178293336 178293336 T C ZNF354B Missense_Mutation p.V42A 0.21 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 5 178413301 178413301 C T GRM6 Missense_Mutation p.A652T 0.30 tolerated(0.06) benign(0.363) TCGA-BR-6452-01 5 178507112 178507112 T A ZNF354C 3'UTR 0.23 TCGA-BR-6452-01 5 178699971 178699971 A G ADAMTS2 Missense_Mutation p.V210A 0.12 deleterious(0.05) probably_damaging(0.932) TCGA-BR-6452-01 5 179201856 179201856 A G MAML1 Missense_Mutation p.D1010G 0.08 deleterious(0) possibly_damaging(0.786) TCGA-BR-6452-01 5 179251252 179251252 G A SQSTM1 Missense_Mutation p.G201D 0.10 tolerated(0.12) possibly_damaging(0.724) TCGA-BR-6452-01 5 179302057 179302057 G A TBC1D9B Silent p.S677S 0.10 TCGA-BR-6452-01 5 179564616 179564616 G A RASGEF1C Nonsense_Mutation p.Q92* 0.23 TCGA-BR-6452-01 5 179688787 179688787 C T MAPK9 Missense_Mutation p.C116Y 0.05 tolerated(0.12) probably_damaging(0.998) TCGA-BR-6452-01 5 180166620 180166620 C T OR2Y1 Missense_Mutation p.A147T 0.17 tolerated(0.4) benign(0.009) TCGA-BR-6452-01 5 180219453 180219453 C T MGAT1 Silent p.P173P 0.14 TCGA-BR-6452-01 5 180582008 180582008 T C OR2V2 Silent p.S22S 0.08 TCGA-BR-6452-01 5 21975268 21975268 A T CDH12 Missense_Mutation p.I153N 0.25 deleterious(0) probably_damaging(0.997) TCGA-BR-6452-01 5 23522467 23522467 G C PRDM9 Missense_Mutation p.G188A 0.16 deleterious(0.03) possibly_damaging(0.842) TCGA-BR-6452-01 5 235410 235410 G A SDHA Missense_Mutation p.V406M 0.20 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BR-6452-01 5 24488088 24488088 T A CDH10 Missense_Mutation p.K684I 0.12 tolerated(0.4) possibly_damaging(0.679) TCGA-BR-6452-01 5 26886083 26886083 T C CDH9 Missense_Mutation p.D541G 0.08 deleterious(0.01) probably_damaging(0.997) TCGA-BR-6452-01 5 2749541 2749541 G T IRX2 Missense_Mutation p.P204T 0.15 deleterious(0.05) benign(0.006) TCGA-BR-6452-01 5 31305342 31305342 T G CDH6 Missense_Mutation p.V354G 0.09 deleterious(0.04) benign(0.19) TCGA-BR-6452-01 5 31526342 31526342 T A DROSHA Missense_Mutation p.H233L 0.11 deleterious_low_confidence(0.02) possibly_damaging(0.507) TCGA-BR-6452-01 5 32355933 32355933 T C ZFR Missense_Mutation p.D1053G 0.09 tolerated(0.15) unknown(0) TCGA-BR-6452-01 5 32387778 32387778 T C ZFR Silent p.G792G 0.09 TCGA-BR-6452-01 5 33455788 33455788 A G TARS Silent p.E257E 0.09 TCGA-BR-6452-01 5 33938202 33938202 G A RXFP3 Missense_Mutation p.V453M 0.24 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BR-6452-01 5 33938278 33938278 C T RXFP3 3'UTR 0.28 TCGA-BR-6452-01 5 33944918 33944918 G A SLC45A2 Silent p.C476C 0.29 TCGA-BR-6452-01 5 35860990 35860990 T C IL7R Missense_Mutation p.F40S 0.09 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 5 3600783 3600783 C T IRX1 Missense_Mutation p.P458L 0.29 tolerated(0.37) benign(0.045) TCGA-BR-6452-01 5 36182033 36182033 A G SKP2 Missense_Mutation p.H392R 0.13 tolerated(0.43) benign(0.247) TCGA-BR-6452-01 5 37006671 37006671 C A NIPBL Nonsense_Mutation p.Y1356* 0.19 TCGA-BR-6452-01 5 37020717 37020717 C T NIPBL Nonsense_Mutation p.R1723* 0.21 TCGA-BR-6452-01 5 37020965 37020965 A T NIPBL Missense_Mutation p.I1772F 0.11 tolerated(0.1) probably_damaging(0.93) TCGA-BR-6452-01 5 37187584 37187584 A G C5orf42 Missense_Mutation p.F1338L 0.11 tolerated(1) benign(0.002) TCGA-BR-6452-01 5 38511961 38511961 A G LIFR Missense_Mutation p.Y223H 0.11 tolerated(0.05) benign(0.056) TCGA-BR-6452-01 5 38947539 38947539 T C RICTOR Missense_Mutation p.M1381V 0.32 tolerated(0.29) benign(0.005) TCGA-BR-6452-01 5 38952456 38952456 C G RICTOR Missense_Mutation p.W990S 0.21 deleterious(0) probably_damaging(0.943) TCGA-BR-6452-01 5 39002727 39002727 G A RICTOR Missense_Mutation p.A101V 0.09 deleterious(0) probably_damaging(0.998) TCGA-BR-6452-01 5 39285290 39285290 A G C9 3'UTR 0.07 TCGA-BR-6452-01 5 39311418 39311418 C T C9 Missense_Mutation p.R311H 0.19 deleterious(0) probably_damaging(0.998) TCGA-BR-6452-01 5 39376984 39376984 A C DAB2 Missense_Mutation p.D635E 0.07 deleterious(0.02) benign(0.405) TCGA-BR-6452-01 5 39382948 39382948 G T DAB2 Silent p.T371T 0.10 TCGA-BR-6452-01 5 39390565 39390565 G A DAB2 Missense_Mutation p.A148V 0.16 deleterious(0) probably_damaging(0.991) TCGA-BR-6452-01 5 39392490 39392490 T C DAB2 Missense_Mutation p.K103E 0.09 deleterious(0) possibly_damaging(0.825) TCGA-BR-6452-01 5 40691943 40691943 A G PTGER4 Silent p.P310P 0.07 TCGA-BR-6452-01 5 40692107 40692107 A G PTGER4 Missense_Mutation p.D365G 0.09 tolerated(0.07) benign(0.005) TCGA-BR-6452-01 5 40769572 40769572 A - PRKAA1 Frame_Shift_Del p.L196* 0.24 TCGA-BR-6452-01 5 40853695 40853695 G A CARD6 Missense_Mutation p.G754D 0.10 tolerated(0.07) benign(0.266) TCGA-BR-6452-01 5 40955575 40955575 G A C7 Missense_Mutation p.D394N 0.09 tolerated(0.54) benign(0.011) TCGA-BR-6452-01 5 41842866 41842866 A T OXCT1 Silent p.G194G 0.08 TCGA-BR-6452-01 5 41850186 41850186 C T OXCT1 Silent p.S170S 0.21 TCGA-BR-6452-01 5 41850248 41850248 C T OXCT1 Missense_Mutation p.A150T 0.14 deleterious(0.02) benign(0.314) TCGA-BR-6452-01 5 43527569 43527569 T C PAIP1 Missense_Mutation p.Y450C 0.12 deleterious(0.03) benign(0.017) TCGA-BR-6452-01 5 43556088 43556088 G A PAIP1 Silent p.P93P 0.09 TCGA-BR-6452-01 5 43624143 43624143 G A NNT Missense_Mutation p.V233I 0.09 tolerated(1) benign(0.005) TCGA-BR-6452-01 5 45262884 45262884 C T HCN1 Silent p.K604K 0.13 TCGA-BR-6452-01 5 453871 453871 A G EXOC3 Missense_Mutation p.I251V 0.08 tolerated(1) benign(0.001) TCGA-BR-6452-01 5 45695850 45695850 T A HCN1 Missense_Mutation p.S116C 0.08 deleterious(0) probably_damaging(0.993) TCGA-BR-6452-01 5 52157298 52157298 C T ITGA1 Missense_Mutation p.P67L 0.16 deleterious(0) probably_damaging(0.932) TCGA-BR-6452-01 5 52344509 52344509 A G ITGA2 Missense_Mutation p.D180G 0.05 deleterious(0.01) probably_damaging(1) TCGA-BR-6452-01 5 5463287 5463287 A T KIAA0947 Missense_Mutation p.K1280N 0.16 tolerated(0.34) benign(0.033) TCGA-BR-6452-01 5 5464075 5464075 A G KIAA0947 Missense_Mutation p.N1543S 0.09 deleterious(0.02) probably_damaging(0.968) TCGA-BR-6452-01 5 55168208 55168208 T A IL31RA Missense_Mutation p.I128N 0.08 deleterious(0) probably_damaging(0.976) TCGA-BR-6452-01 5 55237466 55237466 A G IL6ST Missense_Mutation p.M734T 0.13 deleterious(0) possibly_damaging(0.653) TCGA-BR-6452-01 5 55407092 55407092 T C ANKRD55 Missense_Mutation p.K495E 0.11 tolerated_low_confidence(0.7) benign(0.05) TCGA-BR-6452-01 5 56219147 56219147 G T MIER3 Silent p.A486A 0.21 TCGA-BR-6452-01 5 56231255 56231255 C T MIER3 Missense_Mutation p.V199I 0.20 tolerated(0.8) benign(0.075) TCGA-BR-6452-01 5 59943345 59943345 T C DEPDC1B Silent p.S110S 0.24 TCGA-BR-6452-01 5 60195478 60195478 T C ERCC8 Missense_Mutation p.K232E 0.28 tolerated(1) benign(0) TCGA-BR-6452-01 5 63256873 63256873 C T HTR1A Missense_Mutation p.R225H 0.15 deleterious(0) probably_damaging(0.998) TCGA-BR-6452-01 5 63256991 63256991 C T HTR1A Missense_Mutation p.A186T 0.09 tolerated(0.47) benign(0.377) TCGA-BR-6452-01 5 6372636 6372636 C - MED10 Frame_Shift_Del p.E130Rfs*14 0.22 TCGA-BR-6452-01 5 640603 640603 G A CEP72 Missense_Mutation p.G475S 0.19 tolerated(1) benign(0.002) TCGA-BR-6452-01 5 64867672 64867672 T C PPWD1 Silent p.F176F 0.09 TCGA-BR-6452-01 5 64900754 64900754 G T TRIM23 Missense_Mutation p.P388H 0.18 deleterious(0) probably_damaging(0.998) TCGA-BR-6452-01 5 65077166 65077166 A G NLN Missense_Mutation p.H247R 0.08 deleterious(0) possibly_damaging(0.854) TCGA-BR-6452-01 5 65466667 65466667 G A SREK1 Missense_Mutation p.R459Q 0.21 tolerated_low_confidence(0.2) unknown(0) TCGA-BR-6452-01 5 66459236 66459236 C T MAST4 Missense_Mutation p.A1410V 0.18 benign(0.008) TCGA-BR-6452-01 5 67584567 67584567 C T PIK3R1 Intron 0.10 TCGA-BR-6452-01 5 67593317 67593317 A G PIK3R1 Missense_Mutation p.Y688C 0.11 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 5 70782320 70782320 G A BDP1 Missense_Mutation p.R360H 0.15 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 5 70809109 70809109 G A BDP1 Missense_Mutation p.A1449T 0.10 tolerated(0.41) benign(0.022) TCGA-BR-6452-01 5 71495096 71495096 T C MAP1B Missense_Mutation p.Y1972H 0.08 probably_damaging(0.975) TCGA-BR-6452-01 5 71756528 71756528 A T ZNF366 Missense_Mutation p.Y266N 0.06 deleterious(0.03) probably_damaging(0.994) TCGA-BR-6452-01 5 72173107 72173107 G A TNPO1 Missense_Mutation p.C285Y 0.09 deleterious(0) probably_damaging(0.987) TCGA-BR-6452-01 5 72183988 72183988 C T TNPO1 Missense_Mutation p.R463C 0.06 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 5 72864245 72864245 A T UTP15 Missense_Mutation p.I62F 0.10 deleterious(0) possibly_damaging(0.779) TCGA-BR-6452-01 5 72873772 72873772 G T UTP15 Missense_Mutation p.R329I 0.10 tolerated(0.06) benign(0.094) TCGA-BR-6452-01 5 74646145 74646147 AGA - HMGCR In_Frame_Del p.E246del 0.16 TCGA-BR-6452-01 5 74646159 74646159 A T HMGCR Missense_Mutation p.N247I 0.09 tolerated(0.08) possibly_damaging(0.512) TCGA-BR-6452-01 5 74650443 74650443 G A HMGCR Missense_Mutation p.R495H 0.29 deleterious(0) probably_damaging(0.957) TCGA-BR-6452-01 5 76029054 76029054 C T F2R Missense_Mutation p.A335V 0.23 tolerated(0.96) benign(0.002) TCGA-BR-6452-01 5 76729042 76729042 T - WDR41 Frame_Shift_Del p.N433Mfs*11 0.21 TCGA-BR-6452-01 5 77316593 77316593 T G AP3B1 Missense_Mutation p.N972T 0.14 tolerated(0.47) benign(0) TCGA-BR-6452-01 5 7773061 7773061 G A ADCY2 Missense_Mutation p.C744Y 0.07 deleterious(0) probably_damaging(0.922) TCGA-BR-6452-01 5 78324268 78324268 T A DMGDH Missense_Mutation p.I674L 0.14 tolerated(0.29) benign(0.044) TCGA-BR-6452-01 5 7867769 7867769 T - FASTKD3 Frame_Shift_Del p.K143Rfs*36 0.22 TCGA-BR-6452-01 5 79025398 79025398 G A CMYA5 Silent p.E270E 0.18 TCGA-BR-6452-01 5 79030209 79030209 C A CMYA5 Missense_Mutation p.P1874H 0.07 benign(0.431) TCGA-BR-6452-01 5 79031080 79031080 G T CMYA5 Silent p.P2164P 0.10 TCGA-BR-6452-01 5 79032520 79032520 T C CMYA5 Silent p.D2644D 0.08 TCGA-BR-6452-01 5 79379002 79379002 A - THBS4 3'UTR 0.13 TCGA-BR-6452-01 5 80381689 80381689 A G RASGRF2 Silent p.K410K 0.12 TCGA-BR-6452-01 5 80521507 80521507 A G RASGRF2 Missense_Mutation p.Y1211C 0.28 deleterious(0) possibly_damaging(0.889) TCGA-BR-6452-01 5 80559317 80559317 G A CKMT2 Missense_Mutation p.R341H 0.31 deleterious(0.03) possibly_damaging(0.669) TCGA-BR-6452-01 5 80626717 80626717 C T ACOT12 Silent p.S478S 0.10 TCGA-BR-6452-01 5 81474333 81474333 A G ATG10 Missense_Mutation p.D127G 0.11 deleterious(0) benign(0.315) TCGA-BR-6452-01 5 82400807 82400807 T C XRCC4 Silent p.S23S 0.09 TCGA-BR-6452-01 5 82491701 82491701 A G XRCC4 Missense_Mutation p.H143R 0.10 deleterious(0.01) probably_damaging(0.916) TCGA-BR-6452-01 5 82779373 82779373 T A VCAN Nonsense_Mutation p.C12* 0.21 TCGA-BR-6452-01 5 87494828 87494828 C T TMEM161B Missense_Mutation p.A352T 0.09 deleterious(0.01) possibly_damaging(0.648) TCGA-BR-6452-01 5 89923354 89923354 T C GPR98 Silent p.F333F 0.07 TCGA-BR-6452-01 5 89940532 89940532 A G GPR98 Missense_Mutation p.D915G 0.04 benign(0) TCGA-BR-6452-01 5 90052421 90052421 G T GPR98 Nonsense_Mutation p.G3911* 0.12 TCGA-BR-6452-01 5 9054308 9054308 T C SEMA5A Silent p.G860G 0.10 TCGA-BR-6452-01 5 9154655 9154655 G A SEMA5A Missense_Mutation p.R476W 0.11 deleterious(0.02) benign(0.393) TCGA-BR-6452-01 5 9154780 9154780 A G SEMA5A Missense_Mutation p.V434A 0.08 tolerated(1) benign(0) TCGA-BR-6452-01 5 94030751 94030751 G A ANKRD32 Missense_Mutation p.D971N 0.12 tolerated(0.87) benign(0.016) TCGA-BR-6452-01 5 94731831 94731831 C T FAM81B Missense_Mutation p.A82V 0.16 tolerated(0.07) benign(0.076) TCGA-BR-6452-01 5 94782312 94782312 A - FAM81B Frame_Shift_Del p.K315Nfs*18 0.21 TCGA-BR-6452-01 5 94826671 94826671 T C TTC37 Missense_Mutation p.N1291S 0.14 tolerated(0.42) benign(0.001) TCGA-BR-6452-01 5 94849321 94849321 T A TTC37 Missense_Mutation p.Y911F 0.09 deleterious(0.04) probably_damaging(0.947) TCGA-BR-6452-01 5 94858903 94858903 T C TTC37 Intron 0.08 TCGA-BR-6452-01 5 94878927 94878927 T - TTC37 Frame_Shift_Del p.A66Lfs*4 0.26 TCGA-BR-6452-01 5 94994504 94994504 A C SPATA9 Silent p.P196P 0.10 TCGA-BR-6452-01 5 95224464 95224464 C T ELL2 3'UTR 0.18 TCGA-BR-6452-01 5 95249552 95249552 C T ELL2 Missense_Mutation p.R135Q 0.16 deleterious(0) benign(0.023) TCGA-BR-6452-01 5 95746500 95746500 C T PCSK1 Missense_Mutation p.G358E 0.07 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 5 96139196 96139196 T C ERAP1 Missense_Mutation p.Y145C 0.09 deleterious(0.05) probably_damaging(0.999) TCGA-BR-6452-01 5 98129124 98129124 C T RGMB Silent p.G368G 0.33 TCGA-BR-6452-01 6 100841584 100841584 G A SIM1 Missense_Mutation p.A450V 0.18 deleterious_low_confidence(0.03) benign(0.146) TCGA-BR-6452-01 6 101296112 101296112 A G ASCC3 Missense_Mutation p.M238T 0.09 tolerated(0.45) benign(0) TCGA-BR-6452-01 6 101296277 101296277 G T ASCC3 Missense_Mutation p.P183Q 0.09 tolerated(0.11) benign(0.391) TCGA-BR-6452-01 6 10430275 10430275 T C LINC00518 RNA 0.07 TCGA-BR-6452-01 6 105606454 105606454 T C POPDC3 Missense_Mutation p.Y256C 0.06 tolerated(0.08) benign(0.001) TCGA-BR-6452-01 6 105736671 105736671 G A PREP Silent p.G472G 0.18 TCGA-BR-6452-01 6 106552769 106552770 AG - PRDM1 Frame_Shift_Del p.E247Vfs*23 0.16 TCGA-BR-6452-01 6 107090936 107090936 A - QRSL1 Frame_Shift_Del p.T119Qfs*3 0.15 TCGA-BR-6452-01 6 10709645 10709645 A G PAK1IP1 Missense_Mutation p.E380G 0.11 tolerated_low_confidence(0.06) benign(0.002) TCGA-BR-6452-01 6 107096961 107096961 T A QRSL1 Missense_Mutation p.Y148N 0.22 tolerated(0.06) benign(0.091) TCGA-BR-6452-01 6 10796316 10796316 A G MAK Missense_Mutation p.L353P 0.08 tolerated(0.23) benign(0.001) TCGA-BR-6452-01 6 108067978 108067978 G A SCML4 Silent p.A134A 0.18 TCGA-BR-6452-01 6 108395540 108395540 C T OSTM1 Missense_Mutation p.A106T 0.10 deleterious(0) probably_damaging(0.983) TCGA-BR-6452-01 6 108508599 108508599 A - NR2E1 Frame_Shift_Del p.T366Pfs*46 0.11 TCGA-BR-6452-01 6 10882051 10882051 G A GCM2 5'UTR 0.11 TCGA-BR-6452-01 6 10903157 10903158 - A SYCP2L Frame_Shift_Ins p.F204Ifs*23 0.08 TCGA-BR-6452-01 6 109484127 109484127 A G CEP57L1 Missense_Mutation p.N446S 0.15 tolerated(0.07) benign(0.081) TCGA-BR-6452-01 6 109740430 109740430 T - PPIL6 Frame_Shift_Del p.G217Efs*19 0.22 TCGA-BR-6452-01 6 109803146 109803146 C A ZBTB24 Missense_Mutation p.E28D 0.10 tolerated(0.23) benign(0.394) TCGA-BR-6452-01 6 110300428 110300428 C T GPR6 Missense_Mutation p.P38L 0.19 tolerated_low_confidence(0.19) possibly_damaging(0.713) TCGA-BR-6452-01 6 110300509 110300509 C T GPR6 Missense_Mutation p.P65L 0.18 tolerated(0.07) possibly_damaging(0.726) TCGA-BR-6452-01 6 110777921 110777921 C T SLC22A16 Missense_Mutation p.G118D 0.07 tolerated(0.1) probably_damaging(0.914) TCGA-BR-6452-01 6 111213504 111213504 A G AMD1 Missense_Mutation p.Y158C 0.08 deleterious(0) benign(0.238) TCGA-BR-6452-01 6 111585063 111585063 T C KIAA1919 Missense_Mutation p.L76P 0.10 deleterious(0) possibly_damaging(0.905) TCGA-BR-6452-01 6 111621182 111621182 A - REV3L 3'UTR 0.14 TCGA-BR-6452-01 6 111694279 111694279 T A REV3L Missense_Mutation p.D1760V 0.06 deleterious(0) possibly_damaging(0.674) TCGA-BR-6452-01 6 11191156 11191156 C T NEDD9 Missense_Mutation p.A316T 0.10 deleterious(0.02) benign(0.281) TCGA-BR-6452-01 6 112041137 112041137 G A FYN Missense_Mutation p.P40S 0.08 tolerated(0.31) possibly_damaging(0.581) TCGA-BR-6452-01 6 11565992 11565992 A T TMEM170B Missense_Mutation p.H64L 0.08 deleterious(0) benign(0.011) TCGA-BR-6452-01 6 116542291 116542291 A - NT5DC1 Frame_Shift_Del p.K203Nfs*6 0.19 TCGA-BR-6452-01 6 116967058 116967058 T - ZUFSP Frame_Shift_Del p.N503Tfs*7 0.25 TCGA-BR-6452-01 6 116987885 116987885 T C ZUFSP Silent p.P157P 0.08 TCGA-BR-6452-01 6 117113550 117113550 T C GPRC6A Missense_Mutation p.K846E 0.10 tolerated(0.08) benign(0.109) TCGA-BR-6452-01 6 117237196 117237196 A G RFX6 Missense_Mutation p.K269R 0.18 tolerated(0.53) benign(0.241) TCGA-BR-6452-01 6 121452891 121452891 A T TBC1D32 Missense_Mutation p.D927E 0.15 tolerated(0.65) benign(0.043) TCGA-BR-6452-01 6 121768523 121768523 A G GJA1 Missense_Mutation p.Y177C 0.19 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 6 121768775 121768775 G T GJA1 Missense_Mutation p.G261V 0.09 tolerated(0.43) benign(0.008) TCGA-BR-6452-01 6 122777743 122777743 A G SERINC1 Missense_Mutation p.V85A 0.17 tolerated(0.05) possibly_damaging(0.692) TCGA-BR-6452-01 6 125621699 125621699 C T HDDC2 Missense_Mutation p.R64H 0.09 tolerated(0.33) benign(0) TCGA-BR-6452-01 6 126203608 126203608 G A NCOA7 Missense_Mutation p.E204K 0.19 tolerated(0.11) possibly_damaging(0.657) TCGA-BR-6452-01 6 126293417 126293417 T C HINT3 Missense_Mutation p.V111A 0.15 deleterious(0.04) benign(0.065) TCGA-BR-6452-01 6 127608346 127608346 C T RNF146 Silent p.S196S 0.08 TCGA-BR-6452-01 6 127796643 127796643 G A SOGA3 Missense_Mutation p.A843V 0.22 deleterious(0.02) benign(0.18) TCGA-BR-6452-01 6 128040898 128040898 C A THEMIS Missense_Mutation p.G649V 0.14 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-BR-6452-01 6 128302346 128302346 T C PTPRK Missense_Mutation p.D1215G 0.17 deleterious(0) benign(0.335) TCGA-BR-6452-01 6 128410836 128410836 A G PTPRK Silent p.D488D 0.21 TCGA-BR-6452-01 6 129799866 129799866 G A LAMA2 Missense_Mutation p.G2494S 0.18 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 6 129802444 129802444 G A LAMA2 Missense_Mutation p.V2537M 0.10 tolerated(0.33) benign(0.035) TCGA-BR-6452-01 6 129826384 129826384 G T LAMA2 Missense_Mutation p.V2863L 0.10 deleterious(0.01) possibly_damaging(0.808) TCGA-BR-6452-01 6 130381225 130381225 G A L3MBTL3 Missense_Mutation p.M268I 0.09 deleterious(0) possibly_damaging(0.533) TCGA-BR-6452-01 6 130763074 130763074 A T TMEM200A 3'UTR 0.10 TCGA-BR-6452-01 6 131277431 131277431 C T EPB41L2 Silent p.E65E 0.07 TCGA-BR-6452-01 6 131927653 131927653 T A MED23 Missense_Mutation p.I445F 0.09 tolerated(0.7) possibly_damaging(0.852) TCGA-BR-6452-01 6 131992414 131992414 A G ENPP3 Missense_Mutation p.M197V 0.09 deleterious(0) benign(0.331) TCGA-BR-6452-01 6 132636881 132636881 T C MOXD1 Silent p.S467S 0.08 TCGA-BR-6452-01 6 132695860 132695860 A G MOXD1 Silent p.H107H 0.11 TCGA-BR-6452-01 6 132909949 132909949 A C TAAR5 Missense_Mutation p.F293V 0.10 tolerated(0.58) benign(0.307) TCGA-BR-6452-01 6 133050028 133050028 T - VNN3 Frame_Shift_Del p.K130Rfs*65 0.12 TCGA-BR-6452-01 6 133072393 133072393 T C VNN2 Missense_Mutation p.E364G 0.10 tolerated(0.2) benign(0.004) TCGA-BR-6452-01 6 133092043 133092043 A G SLC18B1 Silent p.Y430Y 0.05 TCGA-BR-6452-01 6 133834178 133834178 T C EYA4 Splice_Site p.X501_splice 0.12 TCGA-BR-6452-01 6 134210807 134210807 G A TCF21 Missense_Mutation p.R91H 0.26 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 6 134210965 134210965 T C TCF21 Missense_Mutation p.Y144H 0.08 tolerated(0.08) benign(0.065) TCGA-BR-6452-01 6 134312212 134312212 A G SLC2A12 3'UTR 0.20 TCGA-BR-6452-01 6 135271131 135271131 A G ALDH8A1 Missense_Mutation p.C21R 0.13 tolerated(0.17) benign(0.435) TCGA-BR-6452-01 6 135751062 135751062 A T AHI1 Missense_Mutation p.I817N 0.18 deleterious(0) probably_damaging(0.99) TCGA-BR-6452-01 6 135778714 135778714 A G AHI1 Missense_Mutation p.S357P 0.06 deleterious(0) benign(0.204) TCGA-BR-6452-01 6 13588569 13588569 C G SIRT5 Missense_Mutation p.A41G 0.08 deleterious(0.02) benign(0.011) TCGA-BR-6452-01 6 136173140 136173140 T C PDE7B Missense_Mutation p.S2P 0.06 deleterious_low_confidence(0.02) benign(0.174) TCGA-BR-6452-01 6 13634706 13634706 G A RANBP9 Silent p.S584S 0.10 TCGA-BR-6452-01 6 136472325 136472325 A G PDE7B Missense_Mutation p.H137R 0.12 deleterious(0) probably_damaging(0.994) TCGA-BR-6452-01 6 137187764 137187764 G A PEX7 Splice_Site p.X176_splice 0.10 TCGA-BR-6452-01 6 137187813 137187813 T A PEX7 Missense_Mutation p.I192N 0.12 tolerated(0.11) benign(0.01) TCGA-BR-6452-01 6 137519722 137519722 A G IFNGR1 Missense_Mutation p.S306P 0.09 deleterious(0.01) probably_damaging(0.996) TCGA-BR-6452-01 6 13802559 13802559 T C MCUR1 Silent p.A185A 0.09 TCGA-BR-6452-01 6 138583990 138583990 G A KIAA1244 Missense_Mutation p.R457H 0.18 deleterious(0.02) probably_damaging(0.999) TCGA-BR-6452-01 6 139135710 139135710 T - ECT2L Frame_Shift_Del p.L52* 0.27 TCGA-BR-6452-01 6 139203916 139203916 G A ECT2L Missense_Mutation p.V646M 0.12 deleterious(0) possibly_damaging(0.723) TCGA-BR-6452-01 6 139266690 139266690 T - REPS1 Frame_Shift_Del p.K141Rfs*4 0.16 TCGA-BR-6452-01 6 139487472 139487472 T C HECA Missense_Mutation p.L108P 0.10 deleterious(0) probably_damaging(0.948) TCGA-BR-6452-01 6 139488146 139488147 - G HECA Frame_Shift_Ins p.H336Tfs*25 0.09 TCGA-BR-6452-01 6 139591760 139591760 C T TXLNB Missense_Mutation p.D174N 0.10 deleterious(0) possibly_damaging(0.827) TCGA-BR-6452-01 6 142714119 142714119 T G GPR126 Missense_Mutation p.V448G 0.17 deleterious(0) possibly_damaging(0.786) TCGA-BR-6452-01 6 142741057 142741057 G A GPR126 Silent p.V1045V 0.22 TCGA-BR-6452-01 6 142764510 142764510 C T GPR126 Missense_Mutation p.A1204V 0.19 tolerated(0.35) benign(0.067) TCGA-BR-6452-01 6 143093789 143093789 T C HIVEP2 Missense_Mutation p.K696R 0.14 deleterious(0.04) benign(0.242) TCGA-BR-6452-01 6 144507898 144507898 A G STX11 Missense_Mutation p.Y45C 0.14 deleterious(0.01) probably_damaging(0.982) TCGA-BR-6452-01 6 144747473 144747473 T C UTRN Silent p.S152S 0.10 TCGA-BR-6452-01 6 144750813 144750813 G A UTRN Missense_Mutation p.R264H 0.24 tolerated(0.11) benign(0.017) TCGA-BR-6452-01 6 144811253 144811253 T C UTRN Missense_Mutation p.L1394S 0.09 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 6 144835835 144835835 G A UTRN Missense_Mutation p.R1708H 0.19 tolerated(0.12) benign(0.066) TCGA-BR-6452-01 6 145156925 145156925 G A UTRN Silent p.E3225E 0.07 TCGA-BR-6452-01 6 146126254 146126254 A G FBXO30 Silent p.L430L 0.08 TCGA-BR-6452-01 6 146720540 146720540 T C GRM1 Missense_Mutation p.F789L 0.12 deleterious(0) probably_damaging(0.997) TCGA-BR-6452-01 6 146755885 146755885 G A GRM1 Missense_Mutation p.A1180T 0.12 tolerated_low_confidence(1) benign(0.053) TCGA-BR-6452-01 6 147655326 147655326 T A STXBP5 Missense_Mutation p.V705D 0.09 tolerated(0.37) benign(0.028) TCGA-BR-6452-01 6 148848703 148848703 A - SASH1 Frame_Shift_Del p.K468Nfs*41 0.28 TCGA-BR-6452-01 6 148854021 148854021 C T SASH1 Silent p.Y551Y 0.12 TCGA-BR-6452-01 6 148865849 148865849 G C SASH1 Missense_Mutation p.L1081F 0.24 deleterious_low_confidence(0.04) possibly_damaging(0.475) TCGA-BR-6452-01 6 149340278 149340278 A G UST Missense_Mutation p.I229V 0.07 tolerated(0.25) benign(0.046) TCGA-BR-6452-01 6 149700267 149700267 A G TAB2 Missense_Mutation p.T406A 0.11 tolerated(0.19) probably_damaging(0.989) TCGA-BR-6452-01 6 149924471 149924471 A G KATNA1 Missense_Mutation p.L221P 0.09 deleterious(0) probably_damaging(0.947) TCGA-BR-6452-01 6 149944357 149944357 T C KATNA1 Missense_Mutation p.N128S 0.13 tolerated(0.64) benign(0.015) TCGA-BR-6452-01 6 150713543 150713543 G A IYD Missense_Mutation p.V145M 0.27 tolerated(0.59) benign(0.094) TCGA-BR-6452-01 6 151161071 151161071 C - PLEKHG1 Frame_Shift_Del p.L1067Sfs*2 0.17 TCGA-BR-6452-01 6 151331062 151331062 C T MTHFD1L Nonsense_Mutation p.R745* 0.07 TCGA-BR-6452-01 6 151790133 151790133 C T C6orf211 Missense_Mutation p.A405V 0.09 deleterious(0.01) probably_damaging(0.934) TCGA-BR-6452-01 6 151869554 151869554 T C CCDC170 Missense_Mutation p.L235P 0.09 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 6 152415579 152415579 C T ESR1 Nonsense_Mutation p.R477* 0.14 TCGA-BR-6452-01 6 152453334 152453334 A T SYNE1 Missense_Mutation p.S8673T 0.09 probably_damaging(0.985) TCGA-BR-6452-01 6 152473104 152473104 C T SYNE1 Missense_Mutation p.R8101H 0.11 probably_damaging(0.91) TCGA-BR-6452-01 6 152539540 152539540 T - SYNE1 Splice_Site p.X7349_splice 0.15 TCGA-BR-6452-01 6 152558018 152558018 G A SYNE1 Silent p.S6711S 0.15 TCGA-BR-6452-01 6 152599230 152599230 G A SYNE1 Silent p.N6189N 0.29 TCGA-BR-6452-01 6 152771898 152771898 A G SYNE1 Missense_Mutation p.V1086A 0.07 benign(0.01) TCGA-BR-6452-01 6 153043137 153043137 G T MYCT1 Missense_Mutation p.A153S 0.06 tolerated(0.38) benign(0.329) TCGA-BR-6452-01 6 153293537 153293537 A C FBXO5 Missense_Mutation p.F321C 0.15 tolerated(0.26) benign(0.005) TCGA-BR-6452-01 6 154360916 154360916 C T OPRM1 Silent p.I172I 0.21 TCGA-BR-6452-01 6 154414463 154414463 A G OPRM1 Intron 0.05 TCGA-BR-6452-01 6 155113964 155113964 T C SCAF8 Missense_Mutation p.I110T 0.11 deleterious(0.01) unknown(0) TCGA-BR-6452-01 6 15512570 15512570 C T JARID2 Silent p.T1028T 0.10 TCGA-BR-6452-01 6 155153655 155153655 G T SCAF8 Missense_Mutation p.R981I 0.08 tolerated_low_confidence(0.06) probably_damaging(0.997) TCGA-BR-6452-01 6 155577773 155577773 A G TIAM2 Missense_Mutation p.K1542E 0.25 tolerated(0.84) benign(0.004) TCGA-BR-6452-01 6 157495225 157495225 A G ARID1B Missense_Mutation p.T1037A 0.11 benign(0.005) TCGA-BR-6452-01 6 157714011 157714011 T G TMEM242 Missense_Mutation p.K116N 0.09 deleterious(0) possibly_damaging(0.843) TCGA-BR-6452-01 6 158532390 158532390 C T SERAC1 3'UTR 0.10 TCGA-BR-6452-01 6 158925039 158925039 G A TULP4 Silent p.R1448R 0.18 TCGA-BR-6452-01 6 159653499 159653499 G A FNDC1 Missense_Mutation p.R652H 0.21 tolerated_low_confidence(0.07) unknown(0) TCGA-BR-6452-01 6 160219095 160219095 A T MRPL18 Silent p.L161L 0.32 TCGA-BR-6452-01 6 160221765 160221765 T A PNLDC1 Missense_Mutation p.F2Y 0.08 deleterious_low_confidence(0) unknown(0) TCGA-BR-6452-01 6 160328535 160328535 A T MAS1 Missense_Mutation p.D183V 0.08 tolerated(0.13) benign(0.045) TCGA-BR-6452-01 6 160469473 160469473 C T IGF2R Silent p.V804V 0.08 TCGA-BR-6452-01 6 160484579 160484579 A T IGF2R Missense_Mutation p.D1268V 0.09 tolerated(0.06) benign(0.071) TCGA-BR-6452-01 6 160932122 160932122 A G LPAL2 5'Flank 0.10 TCGA-BR-6452-01 6 161127481 161127481 C T PLG Missense_Mutation p.A31V 0.09 tolerated(0.28) probably_damaging(0.923) TCGA-BR-6452-01 6 161455391 161455391 C - MAP3K4 Frame_Shift_Del p.S87Afs*6 0.24 TCGA-BR-6452-01 6 16279053 16279053 T C GMPR Missense_Mutation p.Y196H 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-BR-6452-01 6 16307007 16307007 C T ATXN1 Silent p.Q667Q 0.08 TCGA-BR-6452-01 6 163987695 163987695 T - QKI Intron 0.22 TCGA-BR-6452-01 6 165715755 165715755 G A C6orf118 Missense_Mutation p.P19L 0.28 tolerated_low_confidence(0.17) unknown(0) TCGA-BR-6452-01 6 166902367 166902367 C T RPS6KA2 Silent p.Q295Q 0.16 TCGA-BR-6452-01 6 166944731 166944731 G T RPS6KA2 Missense_Mutation p.A104D 0.08 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 6 167453490 167453490 T A FGFR1OP 3'UTR 0.08 TCGA-BR-6452-01 6 167754976 167754976 T C TTLL2 Missense_Mutation p.S530P 0.08 tolerated(0.26) benign(0.005) TCGA-BR-6452-01 6 168947785 168947785 C T SMOC2 Silent p.S177S 0.07 TCGA-BR-6452-01 6 168999591 168999591 G A SMOC2 Missense_Mutation p.G255D 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-BR-6452-01 6 169053890 169053890 G A SMOC2 Missense_Mutation p.D434N 0.20 tolerated(0.66) benign(0.003) TCGA-BR-6452-01 6 169625300 169625300 C T THBS2 Missense_Mutation p.V905I 0.09 tolerated(1) benign(0.003) TCGA-BR-6452-01 6 170151476 170151476 G A TCTE3 Missense_Mutation p.P27S 0.08 tolerated_low_confidence(0.36) benign(0.001) TCGA-BR-6452-01 6 170627418 170627418 T G FAM120B Missense_Mutation p.F314V 0.08 tolerated(0.09) benign(0.187) TCGA-BR-6452-01 6 17292149 17292149 T C RBM24 Silent p.A170A 0.29 TCGA-BR-6452-01 6 17292413 17292413 A G RBM24 3'UTR 0.11 TCGA-BR-6452-01 6 17624850 17624851 - G NUP153 Frame_Shift_Ins p.V1373Cfs*7 0.13 TCGA-BR-6452-01 6 17626268 17626268 A G NUP153 Silent p.A1224A 0.14 TCGA-BR-6452-01 6 17632925 17632925 A G NUP153 Missense_Mutation p.L872S 0.08 deleterious(0) benign(0.102) TCGA-BR-6452-01 6 17637492 17637492 A C NUP153 Missense_Mutation p.F786V 0.11 deleterious(0) possibly_damaging(0.78) TCGA-BR-6452-01 6 17637537 17637537 T A NUP153 Missense_Mutation p.T771S 0.09 tolerated(0.53) benign(0.01) TCGA-BR-6452-01 6 17764724 17764724 T C KIF13A Missense_Mutation p.S1679G 0.08 tolerated_low_confidence(0.06) benign(0.034) TCGA-BR-6452-01 6 18122018 18122018 C A NHLRC1 Missense_Mutation p.G274W 0.11 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 6 18122144 18122144 T C NHLRC1 Missense_Mutation p.T232A 0.10 tolerated(0.07) benign(0.173) TCGA-BR-6452-01 6 18465249 18465249 G A RNF144B Missense_Mutation p.C288Y 0.15 deleterious(0) probably_damaging(0.996) TCGA-BR-6452-01 6 1960171 1960171 C T GMDS Silent p.V191V 0.16 TCGA-BR-6452-01 6 24178771 24178771 A G DCDC2 Silent p.G371G 0.08 TCGA-BR-6452-01 6 24551725 24551725 T - KIAA0319 Frame_Shift_Del p.T993Qfs*17 0.14 TCGA-BR-6452-01 6 24651081 24651082 - T TDP2 Frame_Shift_Ins p.L342Tfs*5 0.10 TCGA-BR-6452-01 6 24850864 24850864 T C FAM65B Silent p.T253T 0.14 TCGA-BR-6452-01 6 25600765 25600765 G A LRRC16A Missense_Mutation p.E1115K 0.11 tolerated_low_confidence(0.1) possibly_damaging(0.453) TCGA-BR-6452-01 6 25726316 25726317 - T HIST1H2AA 3'UTR 0.09 TCGA-BR-6452-01 6 25726369 25726369 T C HIST1H2AA Silent p.Q129Q 0.08 TCGA-BR-6452-01 6 25819947 25819947 C T SLC17A1 Nonsense_Mutation p.W135* 0.10 TCGA-BR-6452-01 6 26045888 26045888 C T HIST1H3C Missense_Mutation p.R84C 0.22 deleterious_low_confidence(0.03) probably_damaging(0.997) TCGA-BR-6452-01 6 26056483 26056483 A T HIST1H1C Silent p.S58S 0.06 TCGA-BR-6452-01 6 26056572 26056573 - A HIST1H1C Frame_Shift_Ins p.G29Wfs*6 0.09 TCGA-BR-6452-01 6 26123956 26123956 G T HIST1H2BC Silent p.A59A 0.09 TCGA-BR-6452-01 6 26189068 26189068 G A HIST1H4D Silent p.R79R 0.19 TCGA-BR-6452-01 6 26200153 26200153 A T HIST1H2BF Missense_Mutation p.T123S 0.11 tolerated_low_confidence(0.08) benign(0.134) TCGA-BR-6452-01 6 26234453 26234453 A G HIST1H1D 3'UTR 0.11 TCGA-BR-6452-01 6 26234700 26234701 - T HIST1H1D Frame_Shift_Ins p.T155Dfs*3 0.13 TCGA-BR-6452-01 6 26392760 26392760 A G BTN2A2 Silent p.S379S 0.12 TCGA-BR-6452-01 6 26393114 26393114 T C BTN2A2 Silent p.P497P 0.29 TCGA-BR-6452-01 6 2680510 2680510 A G MYLK4 Missense_Mutation p.C235R 0.06 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 6 27783212 27783212 T C HIST1H2BM 3'UTR 0.11 TCGA-BR-6452-01 6 27834982 27834982 T C HIST1H1B Missense_Mutation p.K109R 0.12 tolerated(0.2) possibly_damaging(0.75) TCGA-BR-6452-01 6 27835025 27835025 T C HIST1H1B Missense_Mutation p.T95A 0.09 deleterious(0.02) benign(0.444) TCGA-BR-6452-01 6 28294205 28294205 T C ZSCAN31 Missense_Mutation p.E320G 0.07 deleterious(0) possibly_damaging(0.788) TCGA-BR-6452-01 6 28327716 28327716 T C ZKSCAN3 Missense_Mutation p.V118A 0.09 deleterious(0.02) benign(0.248) TCGA-BR-6452-01 6 28554087 28554087 T A SCAND3 Missense_Mutation p.E136D 0.10 deleterious_low_confidence(0.05) benign(0.012) TCGA-BR-6452-01 6 29079854 29079854 T C OR2J3 Missense_Mutation p.Y63H 0.08 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 6 29394945 29394945 T C OR11A1 Silent p.G158G 0.08 TCGA-BR-6452-01 6 2948804 2948804 G A SERPINB6 Missense_Mutation p.R287C 0.07 tolerated(0.32) benign(0.014) TCGA-BR-6452-01 6 29576503 29576503 G T GABBR1 Missense_Mutation p.Q623K 0.07 tolerated(0.24) possibly_damaging(0.833) TCGA-BR-6452-01 6 29643256 29643256 A G ZFP57 Missense_Mutation p.F87L 0.09 tolerated(0.08) benign(0.027) TCGA-BR-6452-01 6 29691190 29691190 C T HLA-F 5'UTR 0.22 TCGA-BR-6452-01 6 30043550 30043550 A G RNF39 Missense_Mutation p.L6S 0.23 tolerated_low_confidence(0.26) unknown(0) TCGA-BR-6452-01 6 30523965 30523965 G A GNL1 Missense_Mutation p.P6S 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-BR-6452-01 6 30569986 30569986 G A PPP1R10 Missense_Mutation p.R814C 0.26 deleterious_low_confidence(0) unknown(0) TCGA-BR-6452-01 6 30572227 30572227 T C PPP1R10 Silent p.Q388Q 0.11 TCGA-BR-6452-01 6 30587523 30587523 T C MRPS18B Silent p.A75A 0.11 TCGA-BR-6452-01 6 30621048 30621048 T - DHX16 Frame_Shift_Del p.I1033* 0.29 TCGA-BR-6452-01 6 30630513 30630513 A G DHX16 Missense_Mutation p.Y479H 0.12 deleterious(0) unknown(0) TCGA-BR-6452-01 6 30671508 30671508 T C MDC1 Missense_Mutation p.M1818V 0.22 tolerated(1) benign(0) TCGA-BR-6452-01 6 31116476 31116476 G A CCHCR1 Silent p.S464S 0.10 TCGA-BR-6452-01 6 31130321 31130321 G A TCF19 Missense_Mutation p.G289R 0.19 tolerated(0.71) benign(0.001) TCGA-BR-6452-01 6 31514301 31514301 C T ATP6V1G2 Silent p.L12L 0.10 TCGA-BR-6452-01 6 31540749 31540749 C A LTA Silent p.A48A 0.28 TCGA-BR-6452-01 6 31541079 31541079 C T LTA Missense_Mutation p.S76L 0.29 tolerated(0.08) benign(0.006) TCGA-BR-6452-01 6 31600367 31600367 C T PRRC2A Missense_Mutation p.S1306F 0.20 benign(0.184) TCGA-BR-6452-01 6 31602965 31602965 G T PRRC2A Missense_Mutation p.Q1739H 0.10 unknown(0) TCGA-BR-6452-01 6 31627032 31627032 C G C6orf47 Silent p.G231G 0.15 TCGA-BR-6452-01 6 31692600 31692601 - G C6orf25 Frame_Shift_Ins p.D202Gfs*31 0.19 TCGA-BR-6452-01 6 31696001 31696002 - C DDAH2 Frame_Shift_Ins p.P181Tfs*35 0.21 TCGA-BR-6452-01 6 31701702 31701702 C - CLIC1 Frame_Shift_Del p.Q63Sfs*37 0.22 TCGA-BR-6452-01 6 31747231 31747231 T A VARS Missense_Mutation p.D1124V 0.16 deleterious(0.02) probably_damaging(0.967) TCGA-BR-6452-01 6 31765402 31765402 A - LSM2 3'UTR 0.28 TCGA-BR-6452-01 6 31937503 31937504 - A SKIV2L 3'UTR 0.10 TCGA-BR-6452-01 6 31963556 31963556 G A C4A Missense_Mutation p.R1072Q 0.17 tolerated(0.07) possibly_damaging(0.852) TCGA-BR-6452-01 6 31963570 31963570 T C C4A Missense_Mutation p.W1077R 0.16 deleterious(0) probably_damaging(0.995) TCGA-BR-6452-01 6 32021419 32021419 C T TNXB Missense_Mutation p.R2844H 0.09 possibly_damaging(0.715) TCGA-BR-6452-01 6 32023893 32023894 - G TNXB Frame_Shift_Ins p.E2735* 0.10 TCGA-BR-6452-01 6 32046840 32046840 C T RNA5SP206 5'Flank 0.09 TCGA-BR-6452-01 6 32155497 32155497 T C PBX2 Missense_Mutation p.H266R 0.19 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 6 32163290 32163290 C - NOTCH4 Frame_Shift_Del p.G1979Dfs*17 0.19 TCGA-BR-6452-01 6 32410334 32410334 G A HLA-DRA Silent p.K64K 0.09 TCGA-BR-6452-01 6 32782325 32782325 T A HLA-DOB Missense_Mutation p.N139Y 0.10 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 6 32782846 32782846 G A HLA-DOB Silent p.G112G 0.22 TCGA-BR-6452-01 6 32818896 32818896 G - TAP1 Frame_Shift_Del p.T352Sfs*4 0.23 TCGA-BR-6452-01 6 32819902 32819903 - A TAP1 Frame_Shift_Ins p.Q337Pfs*7 0.16 TCGA-BR-6452-01 6 32944082 32944082 A G BRD2 Silent p.S222S 0.09 TCGA-BR-6452-01 6 33133401 33133401 G A COL11A2 Missense_Mutation p.R1473W 0.28 unknown(0) TCGA-BR-6452-01 6 33133486 33133486 G A COL11A2 Silent p.T1444T 0.17 TCGA-BR-6452-01 6 33164069 33164069 G A RXRB Intron 0.23 TCGA-BR-6452-01 6 33169042 33169042 C - SLC39A7 Frame_Shift_Del p.H9Tfs*8 0.21 TCGA-BR-6452-01 6 33177443 33177443 G A RING1 Missense_Mutation p.R40Q 0.31 deleterious(0) benign(0.019) TCGA-BR-6452-01 6 33245430 33245430 C T B3GALT4 Silent p.C78C 0.13 TCGA-BR-6452-01 6 33245707 33245707 G A B3GALT4 Missense_Mutation p.V171I 0.25 tolerated(0.85) benign(0.034) TCGA-BR-6452-01 6 33247573 33247573 C T WDR46 Missense_Mutation p.E530K 0.17 tolerated(0.17) possibly_damaging(0.64) TCGA-BR-6452-01 6 33365928 33365928 C T KIFC1 Silent p.G45G 0.11 TCGA-BR-6452-01 6 33423997 33423997 G - ZBTB9 Frame_Shift_Del p.T376Hfs*19 0.20 TCGA-BR-6452-01 6 335142 335142 C T DUSP22 Missense_Mutation p.A56V 0.13 tolerated(0.05) benign(0.011) TCGA-BR-6452-01 6 33641390 33641390 A T ITPR3 Missense_Mutation p.D984V 0.08 deleterious(0) probably_damaging(0.997) TCGA-BR-6452-01 6 33648175 33648175 T C ITPR3 Missense_Mutation p.Y1432H 0.13 deleterious(0.04) benign(0.32) TCGA-BR-6452-01 6 33669177 33669177 A G UQCC2 Silent p.C53C 0.09 TCGA-BR-6452-01 6 34495114 34495114 G A PACSIN1 Silent p.G23G 0.29 TCGA-BR-6452-01 6 34741480 34741480 A G SNRPC 3'UTR 0.24 TCGA-BR-6452-01 6 34826075 34826075 T C UHRF1BP1 Missense_Mutation p.Y648H 0.07 tolerated(0.08) benign(0.008) TCGA-BR-6452-01 6 34935065 34935065 C T ANKS1A Missense_Mutation p.P83S 0.06 deleterious(0.04) probably_damaging(0.998) TCGA-BR-6452-01 6 34985579 34985579 A G ANKS1A Missense_Mutation p.T585A 0.07 tolerated(0.36) benign(0.002) TCGA-BR-6452-01 6 35554677 35554677 A G FKBP5 Intron 0.31 TCGA-BR-6452-01 6 36465624 36465624 C T STK38 Missense_Mutation p.G369R 0.25 deleterious(0) probably_damaging(0.952) TCGA-BR-6452-01 6 3850883 3850883 G T FAM50B Missense_Mutation p.A280S 0.14 deleterious(0) probably_damaging(0.951) TCGA-BR-6452-01 6 38690609 38690609 C T DNAH8 5'Flank 0.23 TCGA-BR-6452-01 6 38738194 38738194 C T DNAH8 Silent p.C324C 0.09 TCGA-BR-6452-01 6 38743641 38743641 A - DNAH8 Frame_Shift_Del p.K410Sfs*18 0.08 TCGA-BR-6452-01 6 38825396 38825396 T - DNAH8 Frame_Shift_Del p.L1730Wfs*4 0.19 TCGA-BR-6452-01 6 38840517 38840517 T - DNAH8 Frame_Shift_Del p.S2184Lfs*8 0.25 TCGA-BR-6452-01 6 38858521 38858521 T C DNAH8 Missense_Mutation p.L2639P 0.12 probably_damaging(0.992) TCGA-BR-6452-01 6 39563911 39563911 C A KIF6 Missense_Mutation p.E255D 0.10 tolerated(0.14) possibly_damaging(0.788) TCGA-BR-6452-01 6 39563941 39563941 T C KIF6 Silent p.K245K 0.08 TCGA-BR-6452-01 6 39580993 39580993 A - KIF6 Frame_Shift_Del p.L204* 0.18 TCGA-BR-6452-01 6 39877611 39877611 G A MOCS1 Missense_Mutation p.A357V 0.11 tolerated(0.14) benign(0.041) TCGA-BR-6452-01 6 4032892 4032892 T C PRPF4B Missense_Mutation p.S381P 0.14 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-BR-6452-01 6 40996189 40996189 T A UNC5CL Missense_Mutation p.T494S 0.09 tolerated_low_confidence(0.29) benign(0.002) TCGA-BR-6452-01 6 4135813 4135813 G A ECI2 5'UTR 0.14 TCGA-BR-6452-01 6 41617445 41617445 G T MDFI Silent p.A116A 0.12 TCGA-BR-6452-01 6 41773764 41773764 C T USP49 Missense_Mutation p.D320N 0.14 tolerated(0.59) benign(0.011) TCGA-BR-6452-01 6 42225919 42225919 C T TRERF1 Missense_Mutation p.V764M 0.08 deleterious(0.05) possibly_damaging(0.623) TCGA-BR-6452-01 6 42603281 42603281 A G UBR2 Silent p.S557S 0.07 TCGA-BR-6452-01 6 42641876 42641876 A C UBR2 Missense_Mutation p.N1399T 0.18 tolerated(0.09) benign(0.001) TCGA-BR-6452-01 6 43022010 43022010 T C MRPL2 3'UTR 0.14 TCGA-BR-6452-01 6 43155142 43155142 C T CUL9 Missense_Mutation p.P516S 0.07 tolerated(0.08) benign(0.004) TCGA-BR-6452-01 6 43168555 43168555 C T CUL9 Silent p.H1210H 0.11 TCGA-BR-6452-01 6 43172842 43172842 A G CUL9 Missense_Mutation p.T1541A 0.11 tolerated(0.07) benign(0.127) TCGA-BR-6452-01 6 43322917 43322918 - TGGA ZNF318 Frame_Shift_Ins p.V719Sfs*13 0.11 TCGA-BR-6452-01 6 43406490 43406490 A G ABCC10 Missense_Mutation p.Y695C 0.10 deleterious(0) probably_damaging(0.983) TCGA-BR-6452-01 6 43541338 43541338 A T XPO5 Missense_Mutation p.F36I 0.12 tolerated(0.19) probably_damaging(0.974) TCGA-BR-6452-01 6 43581998 43581998 G T POLH Missense_Mutation p.V616L 0.24 tolerated(0.41) benign(0.004) TCGA-BR-6452-01 6 44121530 44121530 C T TMEM63B Missense_Mutation p.A687V 0.19 deleterious(0) probably_damaging(0.99) TCGA-BR-6452-01 6 44216456 44216456 T C HSP90AB1 Silent p.N30N 0.12 TCGA-BR-6452-01 6 44274909 44274909 C A AARS2 Intron 0.21 TCGA-BR-6452-01 6 44320601 44320601 C A SPATS1 Missense_Mutation p.A93D 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.67) TCGA-BR-6452-01 6 44371587 44371587 C T CDC5L Missense_Mutation p.A194V 0.12 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 6 45917038 45917038 A T CLIC5 Missense_Mutation p.V244D 0.06 deleterious(0) probably_damaging(0.996) TCGA-BR-6452-01 6 46129477 46129477 A T ENPP5 Silent p.G340G 0.06 TCGA-BR-6452-01 6 46658994 46658994 G T TDRD6 Missense_Mutation p.K1043N 0.08 deleterious(0) probably_damaging(0.93) TCGA-BR-6452-01 6 46827202 46827202 A C GPR116 Missense_Mutation p.V813G 0.11 tolerated(0.37) benign(0.028) TCGA-BR-6452-01 6 46851907 46851907 C T GPR116 Missense_Mutation p.V144I 0.19 tolerated(0.2) benign(0.03) TCGA-BR-6452-01 6 46977420 46977420 A G GPR110 Missense_Mutation p.V584A 0.11 tolerated(0.36) benign(0.058) TCGA-BR-6452-01 6 47675983 47675983 T C GPR115 Silent p.P39P 0.09 TCGA-BR-6452-01 6 486729 486729 C T EXOC2 Missense_Mutation p.S906N 0.22 tolerated(0.74) benign(0.009) TCGA-BR-6452-01 6 4892095 4892095 G A CDYL Missense_Mutation p.R58H 0.11 tolerated(0.38) benign(0.013) TCGA-BR-6452-01 6 49437952 49437952 A - CENPQ Frame_Shift_Del p.K23Rfs*17 0.24 TCGA-BR-6452-01 6 49676859 49676859 T C CRISP2 Silent p.L17L 0.07 TCGA-BR-6452-01 6 50016321 50016322 - T DEFB112 Frame_Shift_Ins p.M15Nfs*13 0.14 TCGA-BR-6452-01 6 50681799 50681799 G A TFAP2D Missense_Mutation p.D11N 0.10 deleterious(0.01) possibly_damaging(0.821) TCGA-BR-6452-01 6 50796364 50796364 T A TFAP2B Missense_Mutation p.N191K 0.10 tolerated(0.49) benign(0.271) TCGA-BR-6452-01 6 51897950 51897950 C T PKHD1 Missense_Mutation p.R1081H 0.10 tolerated(0.54) benign(0) TCGA-BR-6452-01 6 52334208 52334208 A - EFHC1 Frame_Shift_Del p.D408Tfs*7 0.11 TCGA-BR-6452-01 6 53134010 53134010 C A ELOVL5 Missense_Mutation p.G299V 0.15 deleterious(0.02) probably_damaging(0.988) TCGA-BR-6452-01 6 532476 532476 A T EXOC2 Silent p.P791P 0.10 TCGA-BR-6452-01 6 53519513 53519514 - T KLHL31 Frame_Shift_Ins p.N186Kfs*13 0.17 TCGA-BR-6452-01 6 53519830 53519830 T G KLHL31 Missense_Mutation p.T81P 0.10 tolerated(0.17) probably_damaging(0.91) TCGA-BR-6452-01 6 53784454 53784454 A C LRRC1 Missense_Mutation p.E422A 0.07 tolerated(0.23) possibly_damaging(0.601) TCGA-BR-6452-01 6 53989479 53989479 G A MLIP Missense_Mutation p.S143N 0.10 deleterious(0.03) benign(0.288) TCGA-BR-6452-01 6 54804674 54804674 A - FAM83B Frame_Shift_Del p.N303Mfs*11 0.21 TCGA-BR-6452-01 6 54806068 54806068 T G FAM83B Missense_Mutation p.F767V 0.10 deleterious(0) probably_damaging(0.998) TCGA-BR-6452-01 6 56044520 56044520 A G COL21A1 Missense_Mutation p.F166L 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-BR-6452-01 6 56354379 56354379 T C DST Missense_Mutation p.E4306G 0.26 possibly_damaging(0.856) TCGA-BR-6452-01 6 56362299 56362299 C A DST Missense_Mutation p.G4078W 0.11 probably_damaging(1) TCGA-BR-6452-01 6 56376047 56376049 TCT - DST In_Frame_Del p.E3619del 0.41 TCGA-BR-6452-01 6 56417167 56417167 T C DST Missense_Mutation p.K2852E 0.12 probably_damaging(0.999) TCGA-BR-6452-01 6 56483403 56483403 T A DST Intron 0.07 TCGA-BR-6452-01 6 56880075 56880075 G A BEND6 Missense_Mutation p.C148Y 0.10 tolerated(1) benign(0.014) TCGA-BR-6452-01 6 57015643 57015643 T C ZNF451 Missense_Mutation p.F912S 0.09 deleterious(0) probably_damaging(0.997) TCGA-BR-6452-01 6 64422823 64422823 T A PHF3 Missense_Mutation p.I1780N 0.08 deleterious_low_confidence(0) benign(0.209) TCGA-BR-6452-01 6 69758078 69758078 G C BAI3 Silent p.V703V 0.09 TCGA-BR-6452-01 6 70744135 70744135 A C COL19A1 Splice_Site p.X361_splice 0.09 TCGA-BR-6452-01 6 72011643 72011643 A - OGFRL1 Frame_Shift_Del p.K418Rfs*32 0.28 TCGA-BR-6452-01 6 7374252 7374252 G A CAGE1 Missense_Mutation p.T267I 0.07 tolerated(0.07) benign(0.07) TCGA-BR-6452-01 6 73904299 73904299 C T KCNQ5 Missense_Mutation p.T673I 0.11 deleterious(0) probably_damaging(0.961) TCGA-BR-6452-01 6 73904338 73904338 C T KCNQ5 Missense_Mutation p.S686L 0.24 deleterious(0.04) possibly_damaging(0.703) TCGA-BR-6452-01 6 73904905 73904905 G A KCNQ5 Missense_Mutation p.G875D 0.10 deleterious_low_confidence(0.05) probably_damaging(0.911) TCGA-BR-6452-01 6 74210336 74210336 G A MTO1 Missense_Mutation p.A693T 0.25 tolerated(0.2) probably_damaging(0.999) TCGA-BR-6452-01 6 74476735 74476735 T C CD109 Splice_Site p.X499_splice 0.11 TCGA-BR-6452-01 6 74481262 74481262 T C CD109 Silent p.S595S 0.10 TCGA-BR-6452-01 6 7571730 7571730 C T DSP Missense_Mutation p.R606W 0.06 probably_damaging(0.991) TCGA-BR-6452-01 6 75797397 75797397 G - COL12A1 Frame_Shift_Del p.P3026Lfs*51 0.08 TCGA-BR-6452-01 6 7580889 7580889 T C DSP Missense_Mutation p.L1489P 0.16 possibly_damaging(0.448) TCGA-BR-6452-01 6 75827138 75827138 T C COL12A1 Silent p.E2493E 0.07 TCGA-BR-6452-01 6 75833968 75833968 T A COL12A1 Intron 0.12 TCGA-BR-6452-01 6 7584084 7584084 G T DSP Missense_Mutation p.G2197C 0.11 probably_damaging(1) TCGA-BR-6452-01 6 7584584 7584584 C T DSP Silent p.H2363H 0.22 TCGA-BR-6452-01 6 75853014 75853014 C T COL12A1 Missense_Mutation p.R1594H 0.06 probably_damaging(0.977) TCGA-BR-6452-01 6 75884990 75884990 G T COL12A1 Missense_Mutation p.P825H 0.10 possibly_damaging(0.779) TCGA-BR-6452-01 6 75898176 75898176 G A COL12A1 Missense_Mutation p.A300V 0.09 probably_damaging(0.998) TCGA-BR-6452-01 6 76023662 76023662 A G FILIP1 Missense_Mutation p.I629T 0.10 deleterious(0.01) benign(0.002) TCGA-BR-6452-01 6 76617407 76617407 A G MYO6 Missense_Mutation p.T1088A 0.11 tolerated(1) benign(0.303) TCGA-BR-6452-01 6 76657071 76657071 G A IMPG1 Silent p.L668L 0.14 TCGA-BR-6452-01 6 76715197 76715197 T G IMPG1 Missense_Mutation p.E314D 0.08 tolerated(0.16) benign(0.186) TCGA-BR-6452-01 6 76734953 76734953 T C IMPG1 Missense_Mutation p.K174E 0.15 tolerated(1) benign(0) TCGA-BR-6452-01 6 80816557 80816557 G A BCKDHB Silent p.R49R 0.20 TCGA-BR-6452-01 6 82930339 82930339 T A IBTK Missense_Mutation p.I406F 0.08 deleterious(0.01) benign(0.028) TCGA-BR-6452-01 6 83732251 83732251 T C UBE3D Missense_Mutation p.Q256R 0.28 tolerated(0.23) benign(0.02) TCGA-BR-6452-01 6 83830457 83830457 A G DOPEY1 Missense_Mutation p.Q349R 0.13 tolerated(0.44) benign(0.269) TCGA-BR-6452-01 6 83848231 83848231 A G DOPEY1 Missense_Mutation p.I1490M 0.11 tolerated(0.08) benign(0.017) TCGA-BR-6452-01 6 83863667 83863667 T C DOPEY1 Silent p.S2098S 0.11 TCGA-BR-6452-01 6 83888390 83888390 A G PGM3 Splice_Site p.X371_splice 0.09 TCGA-BR-6452-01 6 84799100 84799100 A G MRAP2 Missense_Mutation p.D173G 0.24 deleterious(0) possibly_damaging(0.521) TCGA-BR-6452-01 6 84910585 84910585 T C KIAA1009 Missense_Mutation p.N253D 0.07 tolerated(0.52) benign(0.009) TCGA-BR-6452-01 6 85446856 85446856 A G TBX18 Silent p.Y457Y 0.08 TCGA-BR-6452-01 6 86267737 86267737 T C SNX14 Silent p.A197A 0.07 TCGA-BR-6452-01 6 86329028 86329028 A T SYNCRIP Missense_Mutation p.D372E 0.09 deleterious(0.04) probably_damaging(0.981) TCGA-BR-6452-01 6 87968052 87968053 - T ZNF292 Frame_Shift_Ins p.P1571Sfs*4 0.16 TCGA-BR-6452-01 6 88318838 88318838 A - ORC3 Frame_Shift_Del p.R204Gfs*16 0.09 TCGA-BR-6452-01 6 88385594 88385594 T C AKIRIN2 Silent p.G195G 0.09 TCGA-BR-6452-01 6 88387678 88387678 T C AKIRIN2 Silent p.S129S 0.31 TCGA-BR-6452-01 6 89888367 89888367 T C GABRR1 3'UTR 0.33 TCGA-BR-6452-01 6 89890057 89890057 T C GABRR1 Missense_Mutation p.Y367C 0.18 deleterious(0.01) probably_damaging(0.995) TCGA-BR-6452-01 6 90338889 90338891 AGA - ANKRD6 In_Frame_Del p.K516del 0.08 TCGA-BR-6452-01 6 90372614 90372614 T C MDN1 Missense_Mutation p.E4770G 0.06 benign(0.164) TCGA-BR-6452-01 6 90410395 90410395 T C MDN1 Missense_Mutation p.R2870G 0.10 benign(0.218) TCGA-BR-6452-01 6 90410508 90410508 T C MDN1 Missense_Mutation p.Q2832R 0.08 benign(0.001) TCGA-BR-6452-01 6 90491146 90491146 T C MDN1 Missense_Mutation p.T539A 0.08 benign(0.011) TCGA-BR-6452-01 6 90494776 90494776 C A MDN1 Missense_Mutation p.W468C 0.07 benign(0.265) TCGA-BR-6452-01 6 90571956 90571956 G T CASP8AP2 RNA 0.08 TCGA-BR-6452-01 6 90578332 90578332 A G CASP8AP2 RNA 0.11 TCGA-BR-6452-01 6 90642371 90642371 G A BACH2 Missense_Mutation p.A761V 0.18 tolerated(0.26) benign(0) TCGA-BR-6452-01 6 90661298 90661298 G A BACH2 Missense_Mutation p.A176V 0.14 tolerated(0.26) benign(0.118) TCGA-BR-6452-01 6 91226365 91226365 T C MAP3K7 Missense_Mutation p.K559R 0.11 tolerated(0.22) benign(0.105) TCGA-BR-6452-01 6 91233425 91233425 A T MAP3K7 Missense_Mutation p.S478R 0.12 tolerated(0.28) benign(0.005) TCGA-BR-6452-01 6 96986536 96986536 A C UFL1 Missense_Mutation p.E336D 0.19 tolerated(0.13) benign(0.008) TCGA-BR-6452-01 6 97247161 97247161 A - GPR63 Frame_Shift_Del p.F149Lfs*17 0.25 TCGA-BR-6452-01 6 97634560 97634560 C T MMS22L Missense_Mutation p.M682I 0.12 tolerated(0.4) benign(0.032) TCGA-BR-6452-01 6 99729068 99729068 T A FAXC Missense_Mutation p.D401V 0.09 deleterious_low_confidence(0.01) benign(0.124) TCGA-BR-6452-01 6 99862500 99862500 C A PNISR Missense_Mutation p.W12C 0.08 deleterious(0) unknown(0) TCGA-BR-6452-01 7 100002680 100002680 C - ZCWPW1 Frame_Shift_Del p.V403Wfs*3 0.19 TCGA-BR-6452-01 7 100028639 100028639 C A MEPCE Missense_Mutation p.P333Q 0.24 tolerated(0.13) possibly_damaging(0.541) TCGA-BR-6452-01 7 100350794 100350794 A G ZAN Silent p.P1022P 0.08 TCGA-BR-6452-01 7 100469238 100469238 A G TRIP6 Missense_Mutation p.Y358C 0.10 deleterious(0) probably_damaging(0.959) TCGA-BR-6452-01 7 100490064 100490064 T C ACHE Missense_Mutation p.I482V 0.10 deleterious(0.01) probably_damaging(0.991) TCGA-BR-6452-01 7 100491298 100491298 C T ACHE Missense_Mutation p.A186T 0.09 deleterious(0.04) benign(0.224) TCGA-BR-6452-01 7 100677683 100677683 G A MUC17 Missense_Mutation p.A996T 0.09 probably_damaging(0.98) TCGA-BR-6452-01 7 100679615 100679615 A G MUC17 Missense_Mutation p.T1640A 0.08 probably_damaging(0.977) TCGA-BR-6452-01 7 100686475 100686475 A G MUC17 Silent p.V3926V 0.09 TCGA-BR-6452-01 7 100856390 100856390 T C PLOD3 Missense_Mutation p.K259E 0.12 deleterious(0) probably_damaging(0.94) TCGA-BR-6452-01 7 1008967 1008967 G A COX19 3'UTR 0.21 TCGA-BR-6452-01 7 101188738 101188738 C T COL26A1 Missense_Mutation p.L275F 0.19 tolerated(0.07) probably_damaging(0.945) TCGA-BR-6452-01 7 101256825 101256825 G - MYL10 Frame_Shift_Del p.P204Qfs*42 0.14 TCGA-BR-6452-01 7 101960844 101960844 A G SH2B2 Missense_Mutation p.H520R 0.08 deleterious(0) probably_damaging(0.991) TCGA-BR-6452-01 7 102106487 102106487 C T LRWD1 Missense_Mutation p.P102S 0.11 tolerated(0.43) probably_damaging(0.952) TCGA-BR-6452-01 7 102585121 102585121 A G LRRC17 3'UTR 0.19 TCGA-BR-6452-01 7 102948078 102948078 T C PMPCB Missense_Mutation p.F258L 0.11 deleterious(0.04) benign(0) TCGA-BR-6452-01 7 103191549 103191549 C A RELN Missense_Mutation p.R2089S 0.13 deleterious(0) probably_damaging(0.996) TCGA-BR-6452-01 7 103230160 103230160 G T RELN Missense_Mutation p.A1343E 0.09 tolerated(0.84) benign(0.021) TCGA-BR-6452-01 7 1037311 1037311 G - C7orf50 Frame_Shift_Del p.L179Cfs*136 0.26 TCGA-BR-6452-01 7 105148964 105148964 A G PUS7 5'UTR 0.10 TCGA-BR-6452-01 7 105641973 105641973 C T CDHR3 Missense_Mutation p.A260V 0.08 deleterious(0.03) probably_damaging(1) TCGA-BR-6452-01 7 106508059 106508059 G A PIK3CG Missense_Mutation p.R18Q 0.13 tolerated_low_confidence(0.06) benign(0.13) TCGA-BR-6452-01 7 106781302 106781302 C T PRKAR2B Missense_Mutation p.S164F 0.17 tolerated(0.06) benign(0.07) TCGA-BR-6452-01 7 106799932 106799932 T A PRKAR2B Missense_Mutation p.C388S 0.12 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 7 107434972 107434972 C T SLC26A3 5'UTR 0.09 TCGA-BR-6452-01 7 107575974 107575974 G A LAMB1 Silent p.D1358D 0.05 TCGA-BR-6452-01 7 110763174 110763174 C T LRRN3 Missense_Mutation p.P116S 0.28 tolerated(0.62) benign(0.006) TCGA-BR-6452-01 7 110764599 110764599 A G LRRN3 Missense_Mutation p.I591V 0.12 tolerated(1) benign(0.217) TCGA-BR-6452-01 7 110764825 110764825 T A LRRN3 Nonsense_Mutation p.L666* 0.09 TCGA-BR-6452-01 7 11101630 11101630 T C PHF14 Silent p.L858L 0.11 TCGA-BR-6452-01 7 112424238 112424238 A - TMEM168 Frame_Shift_Del p.S215Pfs*19 0.09 TCGA-BR-6452-01 7 113519801 113519801 C T PPP1R3A Missense_Mutation p.G449D 0.28 tolerated(0.41) benign(0.035) TCGA-BR-6452-01 7 11422208 11422208 C A THSD7A Missense_Mutation p.A1483S 0.19 tolerated(0.86) benign(0.044) TCGA-BR-6452-01 7 114304425 114304425 A G FOXP2 Missense_Mutation p.N671S 0.13 tolerated(0.41) benign(0.003) TCGA-BR-6452-01 7 114656064 114656064 T C MDFIC 3'UTR 0.12 TCGA-BR-6452-01 7 116339390 116339390 C T MET Silent p.Y84Y 0.09 TCGA-BR-6452-01 7 116339813 116339813 T C MET Silent p.G225G 0.09 TCGA-BR-6452-01 7 116403177 116403178 - C MET Frame_Shift_Ins p.L833Pfs*18 0.12 TCGA-BR-6452-01 7 116960775 116960775 C T WNT2 Silent p.R52R 0.14 TCGA-BR-6452-01 7 117431265 117431265 A G CTTNBP2 Missense_Mutation p.I662T 0.12 tolerated(0.13) benign(0.007) TCGA-BR-6452-01 7 117876922 117876922 T C ANKRD7 Silent p.C218C 0.06 TCGA-BR-6452-01 7 120496772 120496772 C T TSPAN12 Missense_Mutation p.A16T 0.13 tolerated(0.24) probably_damaging(0.978) TCGA-BR-6452-01 7 121002996 121002996 T - FAM3C Frame_Shift_Del p.T113Qfs*5 0.15 TCGA-BR-6452-01 7 121650696 121650696 A C PTPRZ1 Missense_Mutation p.E532D 0.07 tolerated(0.23) benign(0.193) TCGA-BR-6452-01 7 121652348 121652348 C T PTPRZ1 Missense_Mutation p.A1083V 0.18 tolerated_low_confidence(0.27) benign(0.002) TCGA-BR-6452-01 7 121694043 121694043 G A PTPRZ1 Nonsense_Mutation p.W2111* 0.06 TCGA-BR-6452-01 7 121719675 121719675 T C AASS Missense_Mutation p.N791S 0.09 tolerated(0.58) benign(0.001) TCGA-BR-6452-01 7 122342388 122342388 T A RNF148 Silent p.V139V 0.08 TCGA-BR-6452-01 7 122635559 122635559 G A TAS2R16 Missense_Mutation p.P44S 0.24 tolerated(0.33) possibly_damaging(0.674) TCGA-BR-6452-01 7 122635650 122635650 G T TAS2R16 Silent p.I13I 0.10 TCGA-BR-6452-01 7 12271530 12271530 G A TMEM106B Missense_Mutation p.D252N 0.10 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 7 124386480 124386481 - T GPR37 3'UTR 0.21 TCGA-BR-6452-01 7 124387074 124387074 A G GPR37 Silent p.C449C 0.19 TCGA-BR-6452-01 7 127238634 127238634 A G FSCN3 Missense_Mutation p.N369S 0.08 tolerated(0.74) benign(0.012) TCGA-BR-6452-01 7 1273256 1273256 C T UNCX Silent p.N125N 0.20 TCGA-BR-6452-01 7 127361418 127361418 C T SND1 Silent p.S372S 0.10 TCGA-BR-6452-01 7 127731895 127731895 G A SND1 Missense_Mutation p.E877K 0.06 tolerated(0.06) benign(0.091) TCGA-BR-6452-01 7 128038643 128038643 C T IMPDH1 Missense_Mutation p.C300Y 0.26 deleterious(0.01) benign(0.001) TCGA-BR-6452-01 7 128470877 128470877 C T FLNC Silent p.R62R 0.15 TCGA-BR-6452-01 7 128610202 128610202 C T TNPO3 Silent p.P866P 0.08 TCGA-BR-6452-01 7 128843398 128843398 T G SMO Missense_Mutation p.C169G 0.15 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 7 129122759 129122759 T A STRIP2 Missense_Mutation p.V709D 0.10 deleterious(0) possibly_damaging(0.795) TCGA-BR-6452-01 7 129122851 129122851 C T STRIP2 Missense_Mutation p.R740C 0.18 deleterious(0) probably_damaging(0.993) TCGA-BR-6452-01 7 131113829 131113829 A G MKLN1 Silent p.Q295Q 0.11 TCGA-BR-6452-01 7 131883351 131883351 A C PLXNA4 Silent p.T877T 0.13 TCGA-BR-6452-01 7 132192892 132192892 C T PLXNA4 Silent p.T187T 0.07 TCGA-BR-6452-01 7 132192942 132192943 - A PLXNA4 Frame_Shift_Ins p.G171Wfs*11 0.08 TCGA-BR-6452-01 7 132959843 132959843 C T EXOC4 Missense_Mutation p.H65Y 0.23 deleterious(0.01) probably_damaging(0.934) TCGA-BR-6452-01 7 133002097 133002097 G A EXOC4 Missense_Mutation p.R239Q 0.14 tolerated(0.14) benign(0.014) TCGA-BR-6452-01 7 134133174 134133174 G A AKR1B1 Silent p.T208T 0.20 TCGA-BR-6452-01 7 134221503 134221503 A G AKR1B10 Silent p.K177K 0.09 TCGA-BR-6452-01 7 134346583 134346583 T C BPGM Silent p.G108G 0.08 TCGA-BR-6452-01 7 135098336 135098336 G A CNOT4 Silent p.C196C 0.13 TCGA-BR-6452-01 7 135304309 135304309 G A NUP205 Missense_Mutation p.A1368T 0.09 tolerated(0.3) benign(0.052) TCGA-BR-6452-01 7 135309918 135309918 G A NUP205 Missense_Mutation p.A1496T 0.11 tolerated(0.06) probably_damaging(0.951) TCGA-BR-6452-01 7 135333207 135333207 A T NUP205 Missense_Mutation p.D1981V 0.11 deleterious(0.01) benign(0.04) TCGA-BR-6452-01 7 135392908 135392908 G A SLC13A4 Missense_Mutation p.R107C 0.09 deleterious(0) probably_damaging(0.971) TCGA-BR-6452-01 7 136587912 136587912 T C CHRM2 Intron 0.16 TCGA-BR-6452-01 7 136936085 136936085 G T PTN Missense_Mutation p.L115M 0.10 tolerated(0.14) benign(0.159) TCGA-BR-6452-01 7 137590509 137590509 A G CREB3L2 Missense_Mutation p.L285S 0.07 deleterious(0) probably_damaging(0.991) TCGA-BR-6452-01 7 137773399 137773399 A G AKR1D1 Missense_Mutation p.Y49C 0.20 deleterious(0.01) probably_damaging(1) TCGA-BR-6452-01 7 138210040 138210040 A G TRIM24 Silent p.L273L 0.10 TCGA-BR-6452-01 7 138603255 138603255 A G KIAA1549 Missense_Mutation p.S373P 0.09 tolerated(0.29) benign(0) TCGA-BR-6452-01 7 138603418 138603418 A G KIAA1549 Silent p.S318S 0.07 TCGA-BR-6452-01 7 138603691 138603691 A T KIAA1549 Missense_Mutation p.S227R 0.08 tolerated(0.2) benign(0.006) TCGA-BR-6452-01 7 138764925 138764925 A G ZC3HAV1 Silent p.F254F 0.08 TCGA-BR-6452-01 7 139164494 139164494 G - KLRG2 Frame_Shift_Del p.P295Qfs*37 0.14 TCGA-BR-6452-01 7 139168212 139168212 G A KLRG2 Silent p.G59G 0.22 TCGA-BR-6452-01 7 139415909 139415909 C A HIPK2 Missense_Mutation p.A309S 0.07 tolerated(0.07) benign(0.292) TCGA-BR-6452-01 7 139719977 139719977 A - TBXAS1 3'UTR 0.11 TCGA-BR-6452-01 7 139826622 139826622 T A KDM7A Missense_Mutation p.M235L 0.12 tolerated(0.41) possibly_damaging(0.618) TCGA-BR-6452-01 7 139833448 139833448 T - KDM7A Frame_Shift_Del p.R97Gfs*41 0.09 TCGA-BR-6452-01 7 140154244 140154244 G A MKRN1 3'UTR 0.29 TCGA-BR-6452-01 7 140223197 140223197 G - DENND2A Frame_Shift_Del p.R859Gfs*26 0.14 TCGA-BR-6452-01 7 141341172 141341172 C T AGK Missense_Mutation p.A284V 0.24 tolerated(0.29) benign(0.217) TCGA-BR-6452-01 7 141464641 141464641 C T TAS2R3 Missense_Mutation p.A228V 0.09 deleterious(0.01) probably_damaging(1) TCGA-BR-6452-01 7 141478688 141478688 C T TAS2R4 Silent p.L134L 0.25 TCGA-BR-6452-01 7 141724940 141724940 A G MGAM Missense_Mutation p.N325D 0.08 deleterious(0) probably_damaging(0.991) TCGA-BR-6452-01 7 14188809 14188809 T - DGKB Frame_Shift_Del p.T788Pfs*25 0.22 TCGA-BR-6452-01 7 142611854 142611854 C T TRPV5 Missense_Mutation p.R492H 0.26 deleterious(0.01) probably_damaging(0.988) TCGA-BR-6452-01 7 142881406 142881406 A G TAS2R39 Missense_Mutation p.I299V 0.17 tolerated(0.31) benign(0.401) TCGA-BR-6452-01 7 142919425 142919425 G A TAS2R40 Missense_Mutation p.R85Q 0.10 tolerated(0.64) benign(0.007) TCGA-BR-6452-01 7 143039041 143039041 T C CLCN1 Silent p.G534G 0.10 TCGA-BR-6452-01 7 143747579 143747579 C A OR2A5 Missense_Mutation p.L29I 0.06 tolerated(0.34) benign(0.007) TCGA-BR-6452-01 7 143792746 143792746 C A OR2A12 Silent p.S182S 0.09 TCGA-BR-6452-01 7 144150652 144150652 C T TPK1 Missense_Mutation p.A240T 0.07 deleterious(0.03) benign(0.022) TCGA-BR-6452-01 7 146805249 146805249 T A CNTNAP2 Silent p.V187V 0.11 TCGA-BR-6452-01 7 14724957 14724957 G A DGKB Nonsense_Mutation p.R248* 0.26 TCGA-BR-6452-01 7 147844651 147844651 A G CNTNAP2 Missense_Mutation p.T875A 0.09 tolerated(0.16) benign(0.031) TCGA-BR-6452-01 7 148497652 148497652 A G CUL1 Missense_Mutation p.D770G 0.08 deleterious(0) probably_damaging(0.99) TCGA-BR-6452-01 7 148769148 148769148 T A ZNF786 Missense_Mutation p.H239L 0.18 tolerated(0.16) benign(0.01) TCGA-BR-6452-01 7 148800939 148800939 T C ZNF425 Missense_Mutation p.Y675C 0.11 tolerated(0.08) benign(0.142) TCGA-BR-6452-01 7 148895675 148895675 C T ZNF282 Missense_Mutation p.T139M 0.21 deleterious(0.02) probably_damaging(1) TCGA-BR-6452-01 7 148978623 148978623 C T ZNF783 Missense_Mutation p.A277V 0.10 tolerated(0.41) benign(0.012) TCGA-BR-6452-01 7 149129101 149129101 C T ZNF777 Silent p.E754E 0.09 TCGA-BR-6452-01 7 149129387 149129387 G A ZNF777 Missense_Mutation p.T659M 0.17 deleterious(0) probably_damaging(0.928) TCGA-BR-6452-01 7 149152807 149152807 T C ZNF777 Missense_Mutation p.T103A 0.16 tolerated_low_confidence(0.18) benign(0) TCGA-BR-6452-01 7 149529972 149529972 C T SSPO RNA 0.17 TCGA-BR-6452-01 7 149575841 149575841 T C ATP6V0E2 Intron 0.11 TCGA-BR-6452-01 7 150034226 150034226 A G LRRC61 Silent p.P92P 0.09 TCGA-BR-6452-01 7 150069797 150069797 C - REPIN1 Frame_Shift_Del p.D548Tfs*? 0.13 TCGA-BR-6452-01 7 150174507 150174507 C T GIMAP8 Missense_Mutation p.A546V 0.13 tolerated(0.32) benign(0.027) TCGA-BR-6452-01 7 150217889 150217889 T - GIMAP7 Frame_Shift_Del p.F277Lfs*28 0.15 TCGA-BR-6452-01 7 150553979 150553979 A G AOC1 Missense_Mutation p.R141G 0.11 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 7 150555934 150555934 C T AOC1 Missense_Mutation p.P552S 0.09 tolerated(0.17) benign(0.133) TCGA-BR-6452-01 7 150935382 150935383 - C CHPF2 Frame_Shift_Ins p.S648Lfs*6 0.20 TCGA-BR-6452-01 7 151049913 151049913 T C NUB1 Silent p.F144F 0.12 TCGA-BR-6452-01 7 151053219 151053219 G T NUB1 Nonsense_Mutation p.E226* 0.12 TCGA-BR-6452-01 7 1513960 1513960 G T INTS1 Silent p.R1891R 0.12 TCGA-BR-6452-01 7 151845492 151845492 T C KMT2C Missense_Mutation p.K4507R 0.09 benign(0.364) TCGA-BR-6452-01 7 151859810 151859810 A T KMT2C Missense_Mutation p.S3618T 0.09 possibly_damaging(0.569) TCGA-BR-6452-01 7 151864460 151864460 T A KMT2C Missense_Mutation p.D3174V 0.08 probably_damaging(0.999) TCGA-BR-6452-01 7 151874681 151874681 T C KMT2C Silent p.L2619L 0.09 TCGA-BR-6452-01 7 151917681 151917681 G A KMT2C Silent p.S1213S 0.22 TCGA-BR-6452-01 7 151960175 151960175 A G KMT2C Missense_Mutation p.C409R 0.12 probably_damaging(1) TCGA-BR-6452-01 7 1538925 1538925 G A INTS1 Silent p.L306L 0.06 TCGA-BR-6452-01 7 154863077 154863077 C T HTR5A Silent p.C156C 0.20 TCGA-BR-6452-01 7 155094494 155094494 C A INSIG1 Missense_Mutation p.L248I 0.07 deleterious(0.04) probably_damaging(0.999) TCGA-BR-6452-01 7 155556609 155556609 G - RBM33 Frame_Shift_Del p.G1030Afs*52 0.33 TCGA-BR-6452-01 7 157985112 157985112 T A PTPRN2 Silent p.R152R 0.11 TCGA-BR-6452-01 7 158447815 158447815 T C NCAPG2 Missense_Mutation p.I881V 0.07 tolerated(0.24) benign(0.015) TCGA-BR-6452-01 7 158526824 158526824 T C ESYT2 3'UTR 0.18 TCGA-BR-6452-01 7 1594988 1594988 C - TMEM184A Frame_Shift_Del p.A45Pfs*92 0.12 TCGA-BR-6452-01 7 16505200 16505200 G T SOSTDC1 Missense_Mutation p.L32I 0.10 tolerated(0.66) possibly_damaging(0.793) TCGA-BR-6452-01 7 16815998 16815998 T - TSPAN13 Frame_Shift_Del p.Y78Ifs*2 0.26 TCGA-BR-6452-01 7 1855722 1855722 C T MAD1L1 Missense_Mutation p.R714H 0.19 tolerated(0.08) benign(0.351) TCGA-BR-6452-01 7 20441551 20441554 AATA - ITGB8 Frame_Shift_Del p.K498Vfs*185 0.11 TCGA-BR-6452-01 7 20449319 20449319 T C ITGB8 Missense_Mutation p.L702P 0.24 deleterious(0.02) probably_damaging(0.972) TCGA-BR-6452-01 7 20666232 20666232 A T ABCB5 Missense_Mutation p.I36L 0.12 tolerated(1) benign(0.005) TCGA-BR-6452-01 7 20826480 20826480 T - SP8 5'UTR 0.20 TCGA-BR-6452-01 7 21906122 21906122 A T DNAH11 Missense_Mutation p.D3851V 0.09 probably_damaging(0.997) TCGA-BR-6452-01 7 21923982 21923982 G A DNAH11 Missense_Mutation p.R4161H 0.26 probably_damaging(1) TCGA-BR-6452-01 7 2262372 2262372 G A MAD1L1 Silent p.N103N 0.15 TCGA-BR-6452-01 7 2275142 2275143 - G FTSJ2 Frame_Shift_Ins p.L119Pfs*11 0.13 TCGA-BR-6452-01 7 23164720 23164720 A G KLHL7 Missense_Mutation p.Y124C 0.11 deleterious(0.02) possibly_damaging(0.888) TCGA-BR-6452-01 7 23164753 23164754 - T KLHL7 Frame_Shift_Ins p.L137Ffs*6 0.15 TCGA-BR-6452-01 7 23724154 23724154 T A FAM221A Silent p.T34T 0.13 TCGA-BR-6452-01 7 23751728 23751728 A T STK31 Missense_Mutation p.I21F 0.16 tolerated_low_confidence(0.12) benign(0.002) TCGA-BR-6452-01 7 23809300 23809300 C T STK31 Silent p.D546D 0.12 TCGA-BR-6452-01 7 24892203 24892204 TC - OSBPL3 Frame_Shift_Del p.K360Tfs*35 0.12 TCGA-BR-6452-01 7 26724393 26724393 A C SKAP2 Missense_Mutation p.S317A 0.12 tolerated(0.09) possibly_damaging(0.639) TCGA-BR-6452-01 7 2687537 2687537 C A TTYH3 Intron 0.17 TCGA-BR-6452-01 7 27141056 27141056 G A HOXA2 Silent p.G140G 0.09 TCGA-BR-6452-01 7 27150293 27150293 A G HOXA3 5'UTR 0.08 TCGA-BR-6452-01 7 27182839 27182839 C T HOXA5 Missense_Mutation p.A130T 0.16 tolerated(0.33) benign(0.006) TCGA-BR-6452-01 7 27224617 27224619 GGA - HOXA11 In_Frame_Del p.S49del 0.19 TCGA-BR-6452-01 7 2770886 2770886 C T GNA12 Missense_Mutation p.V359I 0.18 tolerated(1) benign(0.002) TCGA-BR-6452-01 7 29111986 29111986 G A CPVL Silent p.N221N 0.12 TCGA-BR-6452-01 7 2951840 2951840 A T CARD11 Missense_Mutation p.I1037N 0.13 deleterious(0) possibly_damaging(0.544) TCGA-BR-6452-01 7 29552310 29552310 A G CHN2 Missense_Mutation p.I456V 0.13 tolerated(1) benign(0.003) TCGA-BR-6452-01 7 30693176 30693176 T C CRHR2 Missense_Mutation p.D406G 0.07 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 7 31014631 31014631 A G GHRHR Silent p.K286K 0.09 TCGA-BR-6452-01 7 31102904 31102904 C T ADCYAP1R1 Silent p.S8S 0.08 TCGA-BR-6452-01 7 31683452 31683452 G A CCDC129 Missense_Mutation p.G849D 0.14 tolerated(0.24) probably_damaging(0.921) TCGA-BR-6452-01 7 32909594 32909594 A G KBTBD2 Missense_Mutation p.V412A 0.06 deleterious(0.02) benign(0.257) TCGA-BR-6452-01 7 33020083 33020084 TG - FKBP9 Frame_Shift_Del p.C271* 0.15 TCGA-BR-6452-01 7 33573721 33573721 A T BBS9 Missense_Mutation p.R818S 0.08 deleterious(0) probably_damaging(0.986) TCGA-BR-6452-01 7 36194118 36194118 G A EEPD1 Missense_Mutation p.R62H 0.20 tolerated(0.7) benign(0.008) TCGA-BR-6452-01 7 36934620 36934620 T C ELMO1 Silent p.V480V 0.07 TCGA-BR-6452-01 7 37172811 37172811 G A ELMO1 Missense_Mutation p.T372M 0.07 tolerated(0.3) benign(0.219) TCGA-BR-6452-01 7 37960798 37960798 T A EPDR1 Missense_Mutation p.I86N 0.09 deleterious(0) benign(0.017) TCGA-BR-6452-01 7 38247245 38247245 G A STARD3NL Missense_Mutation p.G47D 0.09 deleterious(0.01) benign(0.131) TCGA-BR-6452-01 7 40134336 40134336 T C CDK13 Silent p.G1432G 0.10 TCGA-BR-6452-01 7 40134465 40134465 C T CDK13 Silent p.L1475L 0.12 TCGA-BR-6452-01 7 40314127 40314127 C T SUGCT Missense_Mutation p.R205C 0.13 deleterious(0) probably_damaging(0.997) TCGA-BR-6452-01 7 4116654 4116654 A G SDK1 Missense_Mutation p.Y1012C 0.09 deleterious(0.04) benign(0.33) TCGA-BR-6452-01 7 41729229 41729229 C - INHBA 3'UTR 0.27 TCGA-BR-6452-01 7 4277380 4277380 C T SDK1 Missense_Mutation p.H2032Y 0.12 deleterious(0.01) benign(0.37) TCGA-BR-6452-01 7 43647896 43647896 G A STK17A Missense_Mutation p.R154K 0.12 tolerated(0.94) benign(0.403) TCGA-BR-6452-01 7 43830895 43830895 A G BLVRA Missense_Mutation p.D61G 0.18 deleterious(0) possibly_damaging(0.58) TCGA-BR-6452-01 7 43916390 43916390 A G URGCP Missense_Mutation p.V891A 0.09 deleterious(0.01) benign(0.05) TCGA-BR-6452-01 7 43917311 43917311 T C URGCP Missense_Mutation p.Q584R 0.09 tolerated(0.22) benign(0.371) TCGA-BR-6452-01 7 44116212 44116212 A G POLM Missense_Mutation p.F244S 0.09 deleterious(0) probably_damaging(0.992) TCGA-BR-6452-01 7 44178596 44178596 G A MYL7 Missense_Mutation p.P151L 0.08 deleterious(0.03) possibly_damaging(0.696) TCGA-BR-6452-01 7 44281896 44281896 T - CAMK2B Frame_Shift_Del p.N247Tfs*7 0.12 TCGA-BR-6452-01 7 44663928 44663928 A G OGDH 5'UTR 0.07 TCGA-BR-6452-01 7 44796612 44796612 G - ZMIZ2 Frame_Shift_Del p.G79Afs*5 0.19 TCGA-BR-6452-01 7 44882918 44882918 G A H2AFV Silent p.A13A 0.09 TCGA-BR-6452-01 7 45108060 45108060 C - CCM2 Frame_Shift_Del p.S187Afs*48 0.11 TCGA-BR-6452-01 7 45216982 45216982 G A RAMP3 Missense_Mutation p.A45T 0.13 tolerated(0.22) possibly_damaging(0.592) TCGA-BR-6452-01 7 45717627 45717627 A G ADCY1 Missense_Mutation p.T589A 0.24 deleterious(0.01) possibly_damaging(0.799) TCGA-BR-6452-01 7 45750165 45750165 G A ADCY1 Missense_Mutation p.A991T 0.11 deleterious(0) probably_damaging(0.997) TCGA-BR-6452-01 7 45750202 45750202 T C ADCY1 Missense_Mutation p.V1003A 0.16 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 7 45957003 45957003 C T IGFBP3 Missense_Mutation p.G153S 0.21 tolerated(0.72) benign(0.032) TCGA-BR-6452-01 7 47408173 47408173 C T TNS3 Silent p.S690S 0.07 TCGA-BR-6452-01 7 47408194 47408194 G A TNS3 Silent p.S683S 0.11 TCGA-BR-6452-01 7 47453571 47453571 T C TNS3 Missense_Mutation p.Y204C 0.10 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 7 4780606 4780606 A G FOXK1 Missense_Mutation p.D233G 0.10 tolerated(0.06) benign(0.306) TCGA-BR-6452-01 7 47869198 47869198 A G PKD1L1 Missense_Mutation p.V2187A 0.08 deleterious(0) benign(0.03) TCGA-BR-6452-01 7 47894797 47894797 G A PKD1L1 Silent p.L1553L 0.09 TCGA-BR-6452-01 7 47897384 47897384 C T PKD1L1 Missense_Mutation p.R1470Q 0.14 tolerated(0.92) benign(0.004) TCGA-BR-6452-01 7 47906161 47906161 G A PKD1L1 Silent p.Y1316Y 0.08 TCGA-BR-6452-01 7 4825911 4825911 T A AP5Z1 Missense_Mutation p.V388D 0.12 deleterious(0) possibly_damaging(0.888) TCGA-BR-6452-01 7 48287869 48287869 A - ABCA13 Frame_Shift_Del p.N566Ifs*5 0.14 TCGA-BR-6452-01 7 48314550 48314550 A - ABCA13 Frame_Shift_Del p.N1764Tfs*18 0.26 TCGA-BR-6452-01 7 48315257 48315257 T C ABCA13 Silent p.I1998I 0.21 TCGA-BR-6452-01 7 48315591 48315591 T C ABCA13 Missense_Mutation p.S2110P 0.09 possibly_damaging(0.748) TCGA-BR-6452-01 7 48318231 48318231 T C ABCA13 Silent p.G2480G 0.08 TCGA-BR-6452-01 7 48318639 48318639 T C ABCA13 Silent p.S2616S 0.10 TCGA-BR-6452-01 7 48337993 48337993 T C ABCA13 Missense_Mutation p.I3077T 0.17 benign(0.01) TCGA-BR-6452-01 7 4901085 4901085 G A PAPOLB Silent p.C118C 0.27 TCGA-BR-6452-01 7 4965157 4965157 C T MMD2 Missense_Mutation p.M18I 0.10 deleterious(0) probably_damaging(0.98) TCGA-BR-6452-01 7 49951753 49951753 G A VWC2 Missense_Mutation p.C317Y 0.13 deleterious(0) probably_damaging(0.996) TCGA-BR-6452-01 7 50513894 50513894 T A FIGNL1 Silent p.G364G 0.10 TCGA-BR-6452-01 7 50535009 50535009 A G DDC Missense_Mutation p.V382A 0.09 deleterious(0.01) probably_damaging(0.925) TCGA-BR-6452-01 7 5104918 5104918 A G RBAK Missense_Mutation p.T611A 0.14 tolerated(0.05) probably_damaging(0.991) TCGA-BR-6452-01 7 51096557 51096557 C A COBL Missense_Mutation p.G746C 0.11 deleterious(0.02) possibly_damaging(0.832) TCGA-BR-6452-01 7 51096763 51096763 T A COBL Missense_Mutation p.N677I 0.12 tolerated(0.12) benign(0.082) TCGA-BR-6452-01 7 5232779 5232779 T A WIPI2 Silent p.G35G 0.07 TCGA-BR-6452-01 7 5352438 5352438 G A TNRC18 Missense_Mutation p.A2695V 0.38 unknown(0) TCGA-BR-6452-01 7 5427427 5427427 T A TNRC18 Missense_Mutation p.E676D 0.16 probably_damaging(0.983) TCGA-BR-6452-01 7 56129476 56129476 A T CCT6A Missense_Mutation p.T462S 0.12 tolerated(0.2) benign(0.027) TCGA-BR-6452-01 7 56132072 56132072 G A SUMF2 Splice_Site p.X42_splice 0.20 TCGA-BR-6452-01 7 56146161 56146161 G A SUMF2 Intron 0.12 TCGA-BR-6452-01 7 56147328 56147328 A - SUMF2 Frame_Shift_Del p.S282Afs*3 0.20 TCGA-BR-6452-01 7 6006678 6006679 - AG RSPH10B Frame_Shift_Ins p.D24Lfs*4 0.38 TCGA-BR-6452-01 7 6064312 6064312 C T EIF2AK1 Missense_Mutation p.V629M 0.18 deleterious_low_confidence(0.01) unknown(0) TCGA-BR-6452-01 7 64291846 64291846 G A ZNF138 Missense_Mutation p.A50T 0.12 tolerated(0.42) benign(0.081) TCGA-BR-6452-01 7 64377979 64377979 T C ZNF273 Silent p.D41D 0.09 TCGA-BR-6452-01 7 64438701 64438701 G A ZNF117 Silent p.L416L 0.11 TCGA-BR-6452-01 7 64864011 64864012 - A ZNF92 Frame_Shift_Ins p.H331Tfs*2 0.14 TCGA-BR-6452-01 7 65705699 65705699 G A TPST1 Missense_Mutation p.R96H 0.11 deleterious(0.05) probably_damaging(0.993) TCGA-BR-6452-01 7 66764405 66764405 T C Y_RNA 5'Flank 0.07 TCGA-BR-6452-01 7 70255176 70255176 C T AUTS2 Silent p.L992L 0.15 TCGA-BR-6452-01 7 70880917 70880917 A G WBSCR17 Missense_Mutation p.Y211C 0.18 deleterious(0.03) possibly_damaging(0.88) TCGA-BR-6452-01 7 71135084 71135084 C T WBSCR17 Missense_Mutation p.A465V 0.07 deleterious(0.04) benign(0.184) TCGA-BR-6452-01 7 72209569 72209569 G A TYW1B Missense_Mutation p.P325L 0.11 deleterious_low_confidence(0.01) benign(0) TCGA-BR-6452-01 7 73010717 73010717 G A MLXIPL Missense_Mutation p.R639W 0.27 tolerated(0.12) benign(0.174) TCGA-BR-6452-01 7 73153044 73153044 G A ABHD11 Silent p.G28G 0.28 TCGA-BR-6452-01 7 73462858 73462858 A G ELN Silent p.A257A 0.17 TCGA-BR-6452-01 7 73462877 73462877 G A ELN Missense_Mutation p.A264T 0.15 unknown(0) TCGA-BR-6452-01 7 73510954 73510954 G A LIMK1 Missense_Mutation p.C52Y 0.13 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 7 73666758 73666758 C T RFC2 Splice_Site p.X61_splice 0.10 TCGA-BR-6452-01 7 73731916 73731916 G A CLIP2 Missense_Mutation p.G14R 0.08 tolerated(0.18) possibly_damaging(0.878) TCGA-BR-6452-01 7 7476083 7476083 T C COL28A1 Silent p.G601G 0.07 TCGA-BR-6452-01 7 75045670 75045670 T C POM121C 3'Flank 0.21 TCGA-BR-6452-01 7 75068445 75068445 T C POM121C Silent p.G95G 0.07 TCGA-BR-6452-01 7 75517387 75517387 C T RHBDD2 Missense_Mutation p.T272M 0.22 tolerated(0.81) benign(0.001) TCGA-BR-6452-01 7 75614176 75614176 C T POR Missense_Mutation p.P383L 0.09 tolerated(0.32) benign(0.384) TCGA-BR-6452-01 7 75959437 75959437 C T YWHAG Silent p.E67E 0.10 TCGA-BR-6452-01 7 76126704 76126704 C T DTX2 Missense_Mutation p.R354C 0.10 tolerated(0.14) benign(0.002) TCGA-BR-6452-01 7 7625282 7625282 A G MIOS Missense_Mutation p.N555S 0.25 tolerated(0.11) benign(0.321) TCGA-BR-6452-01 7 7636009 7636009 C T MIOS Missense_Mutation p.T773I 0.08 deleterious(0) possibly_damaging(0.839) TCGA-BR-6452-01 7 76825713 76825713 G A FGL2 Silent p.V401V 0.23 TCGA-BR-6452-01 7 76829058 76829058 C A FGL2 Missense_Mutation p.G18V 0.09 tolerated(0.13) benign(0.05) TCGA-BR-6452-01 7 77708270 77708270 C A MAGI2 Nonsense_Mutation p.E1234* 0.08 TCGA-BR-6452-01 7 77789472 77789472 G T MAGI2 Silent p.A905A 0.11 TCGA-BR-6452-01 7 81381566 81381566 C T HGF Silent p.S165S 0.18 TCGA-BR-6452-01 7 81667483 81667483 T - CACNA2D1 Frame_Shift_Del p.V317Cfs*2 0.24 TCGA-BR-6452-01 7 82579252 82579252 T C PCLO Missense_Mutation p.K3551R 0.09 unknown(0) TCGA-BR-6452-01 7 8272362 8272362 T A ICA1 Missense_Mutation p.D14V 0.12 deleterious(0.01) possibly_damaging(0.789) TCGA-BR-6452-01 7 82763785 82763785 T A PCLO Silent p.P1027P 0.29 TCGA-BR-6452-01 7 82784146 82784146 T C PCLO Missense_Mutation p.K604R 0.07 unknown(0) TCGA-BR-6452-01 7 84671486 84671486 C T SEMA3D Splice_Site p.X326_splice 0.09 TCGA-BR-6452-01 7 86541542 86541542 C T KIAA1324L Missense_Mutation p.S672N 0.18 tolerated(0.56) benign(0.164) TCGA-BR-6452-01 7 86802919 86802919 A G DMTF1 Silent p.Q132Q 0.08 TCGA-BR-6452-01 7 87022127 87022127 T - CROT Frame_Shift_Del p.S559Pfs*25 0.09 TCGA-BR-6452-01 7 87179871 87179871 C T ABCB1 Silent p.S379S 0.20 TCGA-BR-6452-01 7 87516180 87516180 T A DBF4 Missense_Mutation p.L141I 0.07 tolerated(0.35) benign(0.387) TCGA-BR-6452-01 7 87759706 87759706 A - ADAM22 Frame_Shift_Del p.K254Nfs*17 0.14 TCGA-BR-6452-01 7 87760680 87760680 A G ADAM22 Missense_Mutation p.T308A 0.09 tolerated(0.06) possibly_damaging(0.908) TCGA-BR-6452-01 7 87780325 87780325 A T ADAM22 Silent p.G532G 0.20 TCGA-BR-6452-01 7 87912203 87912203 A G STEAP4 Missense_Mutation p.I246T 0.07 tolerated(1) benign(0.044) TCGA-BR-6452-01 7 88423472 88423472 T C C7orf62 3'UTR 0.10 TCGA-BR-6452-01 7 88423482 88423482 A T C7orf62 3'UTR 0.12 TCGA-BR-6452-01 7 88424168 88424168 T C C7orf62 Missense_Mutation p.Y30C 0.09 deleterious(0) probably_damaging(0.955) TCGA-BR-6452-01 7 88847605 88847605 A C ZNF804B Missense_Mutation p.K82T 0.07 deleterious(0) possibly_damaging(0.903) TCGA-BR-6452-01 7 89854552 89854552 C T STEAP2 Silent p.C52C 0.18 TCGA-BR-6452-01 7 89856621 89856621 G T STEAP2 Missense_Mutation p.A277S 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-BR-6452-01 7 90356055 90356055 T C CDK14 Missense_Mutation p.C82R 0.09 deleterious_low_confidence(0) benign(0.354) TCGA-BR-6452-01 7 90895558 90895558 C T FZD1 Missense_Mutation p.P455S 0.12 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 7 91632368 91632369 - A AKAP9 Frame_Shift_Ins p.I1048Nfs*6 0.11 TCGA-BR-6452-01 7 91708815 91708815 T A AKAP9 Missense_Mutation p.D2456E 0.10 benign(0.014) TCGA-BR-6452-01 7 92020590 92020590 G A ANKIB1 Silent p.R721R 0.09 TCGA-BR-6452-01 7 92247520 92247520 C T CDK6 Missense_Mutation p.V234M 0.11 tolerated(0.12) probably_damaging(0.938) TCGA-BR-6452-01 7 92404119 92404119 C T CDK6 Missense_Mutation p.R87Q 0.12 tolerated(0.15) probably_damaging(0.98) TCGA-BR-6452-01 7 92734465 92734465 A T SAMD9 Missense_Mutation p.C316S 0.10 deleterious(0) probably_damaging(0.992) TCGA-BR-6452-01 7 92735292 92735292 T C SAMD9 Missense_Mutation p.D40G 0.07 deleterious(0) possibly_damaging(0.89) TCGA-BR-6452-01 7 92760589 92760589 A G SAMD9L Missense_Mutation p.S1566P 0.11 deleterious(0) probably_damaging(0.981) TCGA-BR-6452-01 7 92987813 92987813 T - CCDC132 3'UTR 0.21 TCGA-BR-6452-01 7 93516023 93516023 T G TFPI2 3'UTR 0.25 TCGA-BR-6452-01 7 93540172 93540172 G A GNGT1 Missense_Mutation p.G56D 0.08 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 7 94185084 94185085 - A CASD1 3'UTR 0.20 TCGA-BR-6452-01 7 94944662 94944662 A C PON1 Silent p.P114P 0.09 TCGA-BR-6452-01 7 95025597 95025597 C G PON3 Silent p.L22L 0.07 TCGA-BR-6452-01 7 95814285 95814285 T C SLC25A13 Silent p.Q325Q 0.08 TCGA-BR-6452-01 7 96639170 96639170 T A DLX6 Missense_Mutation p.N231K 0.19 tolerated(0.1) possibly_damaging(0.647) TCGA-BR-6452-01 7 96650040 96650040 C T DLX5 3'UTR 0.11 TCGA-BR-6452-01 7 96653778 96653778 C - DLX5 Frame_Shift_Del p.G53Efs*28 0.19 TCGA-BR-6452-01 7 97498452 97498452 G A ASNS Missense_Mutation p.A6V 0.16 tolerated(0.09) possibly_damaging(0.508) TCGA-BR-6452-01 7 97860361 97860361 A G TECPR1 Missense_Mutation p.W732R 0.17 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 7 98535356 98535356 C T TRRAP Silent p.S1439S 0.26 TCGA-BR-6452-01 7 98946494 98946494 A - ARPC1A Frame_Shift_Del p.K139Sfs*56 0.13 TCGA-BR-6452-01 7 99002518 99002518 G A PDAP1 Silent p.D24D 0.09 TCGA-BR-6452-01 7 99022974 99022974 T C ATP5J2-PTCD1 Missense_Mutation p.Q443R 0.08 tolerated(0.32) benign(0.011) TCGA-BR-6452-01 7 99084466 99084466 G A ZNF789 Silent p.R211R 0.08 TCGA-BR-6452-01 7 99092051 99092051 C A ZNF394 Nonsense_Mutation p.G263* 0.08 TCGA-BR-6452-01 7 99103706 99103706 C - ZKSCAN5 Frame_Shift_Del p.P15Qfs*13 0.26 TCGA-BR-6452-01 7 99129621 99129621 T C ZKSCAN5 Missense_Mutation p.C757R 0.09 tolerated(0.48) benign(0.012) TCGA-BR-6452-01 7 99227533 99227533 A G ZSCAN25 Missense_Mutation p.T509A 0.12 tolerated(0.07) probably_damaging(0.922) TCGA-BR-6452-01 7 99526644 99526644 A C GJC3 Silent p.G200G 0.11 TCGA-BR-6452-01 7 99631365 99631365 G A ZKSCAN1 Missense_Mutation p.A413T 0.08 tolerated(0.09) benign(0.151) TCGA-BR-6452-01 7 99703151 99703151 A G AP4M1 Silent p.R306R 0.10 TCGA-BR-6452-01 7 99754477 99754477 C T C7orf43 Silent p.G328G 0.10 TCGA-BR-6452-01 7 99811392 99811392 G A STAG3 Missense_Mutation p.G1211E 0.30 tolerated_low_confidence(0.19) benign(0.069) TCGA-BR-6452-01 7 99965089 99965089 T C PILRB 3'UTR 0.19 TCGA-BR-6452-01 8 100654346 100654346 A - VPS13B Frame_Shift_Del p.T1870Qfs*6 0.08 TCGA-BR-6452-01 8 100729416 100729416 T A VPS13B Missense_Mutation p.S2183T 0.10 tolerated(0.42) benign(0.153) TCGA-BR-6452-01 8 101020754 101020754 A G RGS22 Missense_Mutation p.I737T 0.11 tolerated(0.09) possibly_damaging(0.886) TCGA-BR-6452-01 8 101092539 101092539 A - RGS22 Frame_Shift_Del p.F54Lfs*3 0.15 TCGA-BR-6452-01 8 101153423 101153423 A G FBXO43 Silent p.G353G 0.07 TCGA-BR-6452-01 8 101203638 101203638 A G SPAG1 Missense_Mutation p.T285A 0.07 tolerated(0.46) benign(0.012) TCGA-BR-6452-01 8 101237493 101237493 C A SPAG1 Missense_Mutation p.A594D 0.11 tolerated(0.11) benign(0.135) TCGA-BR-6452-01 8 103236354 103236354 T C RRM2B Missense_Mutation p.N157S 0.12 deleterious_low_confidence(0.02) benign(0.013) TCGA-BR-6452-01 8 103289349 103289349 T - UBR5 Frame_Shift_Del p.E2121Kfs*28 0.36 TCGA-BR-6452-01 8 103372393 103372393 C - UBR5 Frame_Shift_Del p.A98Qfs*23 0.14 TCGA-BR-6452-01 8 103564230 103564230 G T ODF1 Missense_Mutation p.R92M 0.15 deleterious(0) benign(0.36) TCGA-BR-6452-01 8 10464716 10464716 G A RP1L1 Missense_Mutation p.P2298S 0.15 unknown(0) TCGA-BR-6452-01 8 10465537 10465537 T C RP1L1 Missense_Mutation p.E2024G 0.06 unknown(0) TCGA-BR-6452-01 8 10466551 10466551 G A RP1L1 Missense_Mutation p.A1686V 0.09 unknown(0) TCGA-BR-6452-01 8 10466938 10466938 G A RP1L1 Missense_Mutation p.A1557V 0.11 unknown(0) TCGA-BR-6452-01 8 10469390 10469390 C T RP1L1 Missense_Mutation p.V740I 0.13 benign(0.011) TCGA-BR-6452-01 8 10470474 10470474 C A RP1L1 Missense_Mutation p.E378D 0.13 benign(0.053) TCGA-BR-6452-01 8 104898191 104898191 G A RIMS2 Missense_Mutation p.R455Q 0.15 deleterious_low_confidence(0.04) probably_damaging(0.991) TCGA-BR-6452-01 8 105360772 105360772 G A DCSTAMP 5'UTR 0.09 TCGA-BR-6452-01 8 105361020 105361020 T C DCSTAMP Silent p.C80C 0.12 TCGA-BR-6452-01 8 105521172 105521172 A G LRP12 Silent p.T89T 0.16 TCGA-BR-6452-01 8 10583646 10583646 G - SOX7 Frame_Shift_Del p.L309Wfs*14 0.20 TCGA-BR-6452-01 8 109796927 109796927 T C TMEM74 Missense_Mutation p.N134S 0.12 tolerated(0.72) benign(0.004) TCGA-BR-6452-01 8 110471910 110471910 A G PKHD1L1 Missense_Mutation p.Y2364C 0.12 deleterious(0) probably_damaging(0.954) TCGA-BR-6452-01 8 110575641 110575641 A T EBAG9 Intron 0.06 TCGA-BR-6452-01 8 110587443 110587443 C T SYBU Missense_Mutation p.A562T 0.12 tolerated(0.65) benign(0.003) TCGA-BR-6452-01 8 110588011 110588012 GA - SYBU Frame_Shift_Del p.L372Pfs*23 0.08 TCGA-BR-6452-01 8 110984530 110984530 C T KCNV1 Silent p.L316L 0.11 TCGA-BR-6452-01 8 11189446 11189446 C A SLC35G5 Silent p.A277A 0.16 TCGA-BR-6452-01 8 11301908 11301908 G - FAM167A Frame_Shift_Del p.Q5Rfs*26 0.10 TCGA-BR-6452-01 8 113256732 113256732 C T CSMD3 Silent p.G3431G 0.09 TCGA-BR-6452-01 8 113308208 113308208 A T CSMD3 Missense_Mutation p.I2823N 0.09 deleterious(0.02) probably_damaging(0.988) TCGA-BR-6452-01 8 11414274 11414274 G A BLK Missense_Mutation p.E294K 0.12 tolerated(0.13) benign(0.004) TCGA-BR-6452-01 8 116631923 116631923 G A TRPS1 Silent p.V134V 0.06 TCGA-BR-6452-01 8 117658772 117658772 T A EIF3H Missense_Mutation p.D300V 0.08 deleterious(0) probably_damaging(0.989) TCGA-BR-6452-01 8 117950578 117950578 C T AARD Silent p.P32P 0.13 TCGA-BR-6452-01 8 11842018 11842018 C T DEFB135 Silent p.N51N 0.16 TCGA-BR-6452-01 8 119209944 119209944 C T SAMD12 3'UTR 0.10 TCGA-BR-6452-01 8 120431371 120431371 C T NOV Missense_Mutation p.A188V 0.08 tolerated(0.23) possibly_damaging(0.742) TCGA-BR-6452-01 8 120818621 120818622 - A TAF2 Frame_Shift_Ins p.S107Ffs*9 0.12 TCGA-BR-6452-01 8 122641366 122641366 T C HAS2 Missense_Mutation p.K72R 0.16 tolerated(1) benign(0) TCGA-BR-6452-01 8 124153051 124153051 A G TBC1D31 Silent p.A850A 0.07 TCGA-BR-6452-01 8 124664667 124664667 G A KLHL38 Missense_Mutation p.A167V 0.10 tolerated(0.1) benign(0.012) TCGA-BR-6452-01 8 124787521 124787521 T C FAM91A1 Missense_Mutation p.Y98H 0.06 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 8 124998349 124998350 - T FER1L6 Frame_Shift_Ins p.E487* 0.12 TCGA-BR-6452-01 8 125565432 125565432 A T MTSS1 Missense_Mutation p.I690N 0.05 tolerated(0.16) benign(0.123) TCGA-BR-6452-01 8 12598381 12598381 A T LONRF1 Splice_Site p.X321_splice 0.06 TCGA-BR-6452-01 8 125990037 125990038 - A ZNF572 Frame_Shift_Ins p.N511Kfs*43 0.10 TCGA-BR-6452-01 8 126021568 126021568 T A SQLE Missense_Mutation p.I364N 0.17 deleterious(0) probably_damaging(0.98) TCGA-BR-6452-01 8 126088714 126088714 C T KIAA0196 Missense_Mutation p.R247H 0.10 deleterious(0.02) probably_damaging(1) TCGA-BR-6452-01 8 128428863 128428863 A G POU5F1B Missense_Mutation p.Q251R 0.27 tolerated(0.11) possibly_damaging(0.648) TCGA-BR-6452-01 8 12957440 12957440 T G DLC1 Silent p.P802P 0.10 TCGA-BR-6452-01 8 130789814 130789814 C T GSDMC Missense_Mutation p.R7H 0.06 tolerated(0.25) benign(0.158) TCGA-BR-6452-01 8 133036882 133036882 T C OC90 Missense_Mutation p.D427G 0.09 tolerated(0.21) benign(0.176) TCGA-BR-6452-01 8 133196541 133196541 T C KCNQ3 Missense_Mutation p.Y184C 0.09 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 8 13357407 13357407 A G DLC1 Silent p.C58C 0.08 TCGA-BR-6452-01 8 13357493 13357493 C A DLC1 Missense_Mutation p.A30S 0.07 deleterious_low_confidence(0.02) benign(0.146) TCGA-BR-6452-01 8 133645002 133645002 C T LRRC6 Missense_Mutation p.D213N 0.06 tolerated(0.11) benign(0.013) TCGA-BR-6452-01 8 133895214 133895214 A G TG Missense_Mutation p.T349A 0.12 deleterious(0.01) possibly_damaging(0.666) TCGA-BR-6452-01 8 134062229 134062229 C T SLA Missense_Mutation p.G96R 0.18 deleterious(0.01) probably_damaging(1) TCGA-BR-6452-01 8 134232957 134232957 C - WISP1 Frame_Shift_Del p.P163Rfs*11 0.15 TCGA-BR-6452-01 8 134276877 134276877 A C NDRG1 Missense_Mutation p.L40V 0.07 tolerated(0.09) benign(0.007) TCGA-BR-6452-01 8 135669826 135669826 G - ZFAT Frame_Shift_Del p.N59Tfs*12 0.13 TCGA-BR-6452-01 8 139180136 139180136 A C FAM135B Splice_Site p.X420_splice 0.08 TCGA-BR-6452-01 8 139278000 139278000 T C FAM135B Silent p.V81V 0.15 TCGA-BR-6452-01 8 139611097 139611097 T - COL22A1 Frame_Shift_Del p.G1411Afs*17 0.12 TCGA-BR-6452-01 8 141301164 141301164 A G TRAPPC9 Silent p.V692V 0.15 TCGA-BR-6452-01 8 141449272 141449272 G A TRAPPC9 Silent p.G301G 0.13 TCGA-BR-6452-01 8 141542676 141542676 G A AGO2 Silent p.D770D 0.12 TCGA-BR-6452-01 8 141559224 141559224 G A AGO2 Missense_Mutation p.T526M 0.13 deleterious(0) probably_damaging(0.943) TCGA-BR-6452-01 8 141889685 141889685 A G PTK2 Missense_Mutation p.Y83H 0.05 deleterious(0) probably_damaging(0.91) TCGA-BR-6452-01 8 142231844 142231844 T C SLC45A4 Missense_Mutation p.S37G 0.07 tolerated(0.08) benign(0.168) TCGA-BR-6452-01 8 143623370 143623370 C T BAI1 Missense_Mutation p.P1259S 0.27 tolerated(0.22) possibly_damaging(0.641) TCGA-BR-6452-01 8 143694743 143694743 G A ARC Missense_Mutation p.P297L 0.09 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 8 143994781 143994781 G A CYP11B2 Silent p.A347A 0.12 TCGA-BR-6452-01 8 144332641 144332641 G A ZFP41 3'UTR 0.11 TCGA-BR-6452-01 8 144378517 144378517 C T ZNF696 Silent p.A224A 0.20 TCGA-BR-6452-01 8 144462909 144462909 G A RHPN1 Missense_Mutation p.R456H 0.20 tolerated(0.42) benign(0.027) TCGA-BR-6452-01 8 144620360 144620360 G A ZC3H3 Missense_Mutation p.R393C 0.06 deleterious(0.04) benign(0.004) TCGA-BR-6452-01 8 144877663 144877663 C T SCRIB Missense_Mutation p.G1214D 0.14 probably_damaging(0.971) TCGA-BR-6452-01 8 144898884 144898884 C T PUF60 Missense_Mutation p.V496I 0.10 deleterious(0.04) benign(0.006) TCGA-BR-6452-01 8 144902883 144902883 C T PUF60 Missense_Mutation p.A101T 0.11 tolerated(0.18) possibly_damaging(0.622) TCGA-BR-6452-01 8 144920921 144920921 A G NRBP2 Silent p.N257N 0.14 TCGA-BR-6452-01 8 144942445 144942445 C T EPPK1 Silent p.Q1659Q 0.17 TCGA-BR-6452-01 8 144991141 144991141 A G PLEC Missense_Mutation p.I4420T 0.08 probably_damaging(0.999) TCGA-BR-6452-01 8 144991345 144991345 T C PLEC Missense_Mutation p.D4352G 0.13 probably_damaging(0.999) TCGA-BR-6452-01 8 144993077 144993077 C T PLEC Missense_Mutation p.A3775T 0.06 benign(0.014) TCGA-BR-6452-01 8 144993131 144993131 T C PLEC Missense_Mutation p.I3757V 0.13 benign(0.338) TCGA-BR-6452-01 8 144996247 144996247 C T PLEC Missense_Mutation p.R2718Q 0.19 benign(0.015) TCGA-BR-6452-01 8 145000981 145000981 C A PLEC Nonsense_Mutation p.E1476* 0.08 TCGA-BR-6452-01 8 145059959 145059959 A C PARP10 Silent p.P122P 0.09 TCGA-BR-6452-01 8 145140934 145140934 A G GPAA1 Missense_Mutation p.E591G 0.11 deleterious(0.01) benign(0.077) TCGA-BR-6452-01 8 145161332 145161332 C T MAF1 Silent p.D155D 0.07 TCGA-BR-6452-01 8 145542209 145542209 C T DGAT1 Silent p.A163A 0.16 TCGA-BR-6452-01 8 145557088 145557088 G A SCRT1 Missense_Mutation p.S269L 0.10 deleterious(0) unknown(0) TCGA-BR-6452-01 8 145582977 145582977 T C SLC52A2 Silent p.R8R 0.12 TCGA-BR-6452-01 8 145664103 145664103 C T TONSL Missense_Mutation p.G499D 0.16 tolerated(0.18) benign(0.003) TCGA-BR-6452-01 8 145947422 145947422 C T ZNF251 Silent p.E541E 0.07 TCGA-BR-6452-01 8 146003824 146003824 C A ZNF34 Missense_Mutation p.Q32H 0.21 deleterious(0) benign(0.003) TCGA-BR-6452-01 8 146016676 146016676 T C RPL8 Missense_Mutation p.N162S 0.06 tolerated(0.27) benign(0.014) TCGA-BR-6452-01 8 1497607 1497607 G A DLGAP2 Missense_Mutation p.A250T 0.09 tolerated(0.39) benign(0.002) TCGA-BR-6452-01 8 15480695 15480695 G A TUSC3 Missense_Mutation p.R82Q 0.06 deleterious(0) possibly_damaging(0.889) TCGA-BR-6452-01 8 16935341 16935341 C T MICU3 Missense_Mutation p.S206L 0.12 deleterious(0) benign(0.374) TCGA-BR-6452-01 8 17198974 17198974 G A MTMR7 Silent p.S210S 0.11 TCGA-BR-6452-01 8 17554837 17554837 G A MTUS1 Intron 0.07 TCGA-BR-6452-01 8 17579226 17579227 TT C MTUS1 Intron 0.11 TCGA-BR-6452-01 8 17810589 17810589 C T PCM1 Silent p.V394V 0.29 TCGA-BR-6452-01 8 18079909 18079909 A G NAT1 Missense_Mutation p.N180S 0.04 tolerated(0.73) benign(0.001) TCGA-BR-6452-01 8 1828298 1828298 A T ARHGEF10 Missense_Mutation p.I310F 0.09 tolerated(0.06) benign(0.381) TCGA-BR-6452-01 8 1851564 1851564 C T ARHGEF10 Missense_Mutation p.R590C 0.15 deleterious(0.03) probably_damaging(0.999) TCGA-BR-6452-01 8 196313 196313 A G ZNF596 Missense_Mutation p.N489S 0.07 tolerated(0.97) benign(0.09) TCGA-BR-6452-01 8 20077934 20077934 C T ATP6V1B2 3'UTR 0.09 TCGA-BR-6452-01 8 20110461 20110461 C T LZTS1 Silent p.A327A 0.09 TCGA-BR-6452-01 8 21976568 21976568 T G HR Silent p.S1036S 0.10 TCGA-BR-6452-01 8 21976797 21976797 C T HR Splice_Site p.X993_splice 0.15 TCGA-BR-6452-01 8 21996183 21996183 C T REEP4 Missense_Mutation p.R226H 0.12 tolerated(0.06) possibly_damaging(0.901) TCGA-BR-6452-01 8 22006022 22006022 C T LGI3 Missense_Mutation p.R433H 0.19 tolerated(0.05) possibly_damaging(0.841) TCGA-BR-6452-01 8 22012934 22012934 C T LGI3 Silent p.A83A 0.20 TCGA-BR-6452-01 8 22105428 22105428 C T POLR3D Nonsense_Mutation p.R90* 0.12 TCGA-BR-6452-01 8 22472975 22472975 C - CCAR2 Frame_Shift_Del p.R417Gfs*89 0.16 TCGA-BR-6452-01 8 22864590 22864590 A G RHOBTB2 Missense_Mutation p.I300V 0.06 tolerated(0.33) benign(0.034) TCGA-BR-6452-01 8 22864673 22864673 G - RHOBTB2 Frame_Shift_Del p.G329Afs*88 0.23 TCGA-BR-6452-01 8 22881771 22881771 T A TNFRSF10B Missense_Mutation p.E313D 0.11 tolerated(0.24) possibly_damaging(0.65) TCGA-BR-6452-01 8 23155621 23155621 C T LOXL2 Missense_Mutation p.E754K 0.17 tolerated(0.23) benign(0.047) TCGA-BR-6452-01 8 23167310 23167310 G A LOXL2 Missense_Mutation p.A584V 0.08 deleterious(0) probably_damaging(0.967) TCGA-BR-6452-01 8 23177441 23177441 A G LOXL2 Missense_Mutation p.V476A 0.13 tolerated(0.44) possibly_damaging(0.665) TCGA-BR-6452-01 8 23198524 23198524 A G LOXL2 Missense_Mutation p.Y242H 0.14 tolerated(0.39) probably_damaging(0.976) TCGA-BR-6452-01 8 24200626 24200626 G A ADAM28 Missense_Mutation p.A615T 0.11 tolerated(0.06) possibly_damaging(0.543) TCGA-BR-6452-01 8 24356804 24356804 G A ADAM7 Missense_Mutation p.C633Y 0.09 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 8 24771921 24771921 G A NEFM Silent p.A205A 0.17 TCGA-BR-6452-01 8 25317936 25317936 T C CDCA2 Missense_Mutation p.V33A 0.06 tolerated(0.12) benign(0.029) TCGA-BR-6452-01 8 25718615 25718615 C T EBF2 Missense_Mutation p.G431D 0.08 tolerated_low_confidence(0.1) benign(0.193) TCGA-BR-6452-01 8 26220238 26220238 A C PPP2R2A Missense_Mutation p.T236P 0.10 deleterious(0) benign(0.068) TCGA-BR-6452-01 8 26238433 26238433 G A BNIP3L 5'Flank 0.13 TCGA-BR-6452-01 8 26365119 26365119 A - PNMA2 3'UTR 0.24 TCGA-BR-6452-01 8 26722383 26722383 C - ADRA1A Frame_Shift_Del p.G35Afs*12 0.21 TCGA-BR-6452-01 8 26722496 26722496 C T ADRA1A 5'UTR 0.16 TCGA-BR-6452-01 8 27320855 27320855 C - CHRNA2 Frame_Shift_Del p.A369Pfs*11 0.22 TCGA-BR-6452-01 8 27457490 27457490 C T CLU Missense_Mutation p.R324Q 0.23 tolerated(0.07) probably_damaging(0.999) TCGA-BR-6452-01 8 27516928 27516928 G A SCARA3 Missense_Mutation p.R414Q 0.19 deleterious(0.03) benign(0.116) TCGA-BR-6452-01 8 27606083 27606083 T C CCDC25 Missense_Mutation p.T93A 0.05 deleterious(0) probably_damaging(0.972) TCGA-BR-6452-01 8 27650265 27650265 T C ESCO2 Silent p.T478T 0.11 TCGA-BR-6452-01 8 27737144 27737144 G A SCARA5 Silent p.C431C 0.17 TCGA-BR-6452-01 8 27764677 27764677 G A SCARA5 Missense_Mutation p.R362C 0.16 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 8 27891059 27891059 A - NUGGC Frame_Shift_Del p.F589Lfs*11 0.16 TCGA-BR-6452-01 8 28019591 28019591 A G ELP3 Missense_Mutation p.I521M 0.07 deleterious(0.03) probably_damaging(0.999) TCGA-BR-6452-01 8 28210108 28210108 A T ZNF395 Missense_Mutation p.V301D 0.06 deleterious(0) probably_damaging(0.992) TCGA-BR-6452-01 8 2830724 2830724 A T CSMD1 Nonsense_Mutation p.C2946* 0.11 TCGA-BR-6452-01 8 28608394 28608394 C T EXTL3 3'UTR 0.28 TCGA-BR-6452-01 8 29963452 29963452 C T LEPROTL1 Intron 0.16 TCGA-BR-6452-01 8 30036948 30036950 ATA - DCTN6 In_Frame_Del p.N105del 0.19 TCGA-BR-6452-01 8 30436555 30436555 C A GTF2E2 Splice_Site p.X254_splice 0.05 TCGA-BR-6452-01 8 30510971 30510971 A G GTF2E2 Missense_Mutation p.S49P 0.11 tolerated(0.24) benign(0.003) TCGA-BR-6452-01 8 30695219 30695219 G A TEX15 Nonsense_Mutation p.Q2478* 0.17 TCGA-BR-6452-01 8 30701516 30701516 T - TEX15 Frame_Shift_Del p.N1673Tfs*10 0.11 TCGA-BR-6452-01 8 30704620 30704620 T C TEX15 Silent p.L638L 0.15 TCGA-BR-6452-01 8 3087575 3087575 A G CSMD1 Silent p.P1444P 0.14 TCGA-BR-6452-01 8 3087584 3087584 T C CSMD1 Silent p.Q1441Q 0.08 TCGA-BR-6452-01 8 30933738 30933738 T C WRN Silent p.S258S 0.06 TCGA-BR-6452-01 8 31007893 31007893 T G WRN Silent p.G1203G 0.09 TCGA-BR-6452-01 8 3165968 3165968 C T CSMD1 Missense_Mutation p.R1230H 0.15 possibly_damaging(0.636) TCGA-BR-6452-01 8 32453511 32453511 A - NRG1 Frame_Shift_Del p.K91Sfs*24 0.18 TCGA-BR-6452-01 8 32600216 32600216 A G NRG1 Missense_Mutation p.D219G 0.05 deleterious(0.01) benign(0.042) TCGA-BR-6452-01 8 32621679 32621679 A C NRG1 Missense_Mutation p.E566A 0.16 tolerated(0.2) benign(0.106) TCGA-BR-6452-01 8 33369888 33369888 G T TTI2 Missense_Mutation p.L82M 0.07 deleterious(0.03) possibly_damaging(0.786) TCGA-BR-6452-01 8 3474301 3474301 G A CSMD1 Missense_Mutation p.A343V 0.09 benign(0.127) TCGA-BR-6452-01 8 37704490 37704490 T G BRF2 Missense_Mutation p.T140P 0.08 tolerated(0.05) benign(0.078) TCGA-BR-6452-01 8 37964605 37964605 C T ASH2L Nonsense_Mutation p.R108* 0.10 TCGA-BR-6452-01 8 38005720 38005720 G A STAR Nonsense_Mutation p.Q102* 0.09 TCGA-BR-6452-01 8 38103772 38103772 T A DDHD2 Missense_Mutation p.I360N 0.06 deleterious(0) possibly_damaging(0.786) TCGA-BR-6452-01 8 38189055 38189055 G A WHSC1L1 Missense_Mutation p.A320V 0.16 deleterious(0.05) probably_damaging(1) TCGA-BR-6452-01 8 38264558 38264558 T C LETM2 Splice_Site p.X390_splice 0.10 TCGA-BR-6452-01 8 38279324 38279324 C T FGFR1 Missense_Mutation p.V389I 0.13 deleterious(0.05) probably_damaging(0.998) TCGA-BR-6452-01 8 38282024 38282024 T C FGFR1 Intron 0.06 TCGA-BR-6452-01 8 39525578 39525578 A T ADAM18 Missense_Mutation p.Y463F 0.07 tolerated(0.44) possibly_damaging(0.454) TCGA-BR-6452-01 8 41122885 41122885 T C SFRP1 Missense_Mutation p.Y249C 0.07 deleterious(0) probably_damaging(0.923) TCGA-BR-6452-01 8 41363518 41363518 G A GOLGA7 Missense_Mutation p.R118Q 0.14 deleterious(0) possibly_damaging(0.872) TCGA-BR-6452-01 8 41469463 41469463 A G AGPAT6 Missense_Mutation p.Y218C 0.10 tolerated(0.33) benign(0.157) TCGA-BR-6452-01 8 41577192 41577192 T G ANK1 Missense_Mutation p.N398T 0.06 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 8 42023011 42023011 C T AP3M2 Missense_Mutation p.R246C 0.07 deleterious(0) probably_damaging(0.997) TCGA-BR-6452-01 8 42024863 42024864 AC - AP3M2 Frame_Shift_Del p.T331Ifs*38 0.14 TCGA-BR-6452-01 8 42025322 42025322 A G AP3M2 Missense_Mutation p.I384V 0.12 tolerated(1) benign(0.009) TCGA-BR-6452-01 8 42213040 42213041 - A POLB Frame_Shift_Ins p.N128Kfs*2 0.10 TCGA-BR-6452-01 8 42857261 42857261 A - HOOK3 Frame_Shift_Del p.K546Rfs*7 0.17 TCGA-BR-6452-01 8 43147761 43147761 C A POTEA RNA 0.07 TCGA-BR-6452-01 8 442651 442651 T G TDRP Missense_Mutation p.K102N 0.06 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 8 48309037 48309037 C T SPIDR Silent p.H209H 0.10 TCGA-BR-6452-01 8 48613001 48613001 G A SPIDR Nonsense_Mutation p.W574* 0.06 TCGA-BR-6452-01 8 48647993 48647993 G A SPIDR Missense_Mutation p.G910E 0.06 tolerated(1) benign(0.081) TCGA-BR-6452-01 8 48689516 48689516 C T PRKDC Missense_Mutation p.G4023E 0.10 probably_damaging(0.939) TCGA-BR-6452-01 8 48855917 48855917 C T PRKDC Missense_Mutation p.R273H 0.09 benign(0.014) TCGA-BR-6452-01 8 49643102 49643102 T C EFCAB1 Missense_Mutation p.K106E 0.18 tolerated(0.12) benign(0.032) TCGA-BR-6452-01 8 49832964 49832964 A G SNAI2 Missense_Mutation p.M39T 0.05 tolerated(0.43) benign(0.008) TCGA-BR-6452-01 8 53025728 53025728 T A ST18 3'UTR 0.07 TCGA-BR-6452-01 8 53084434 53084434 C A ST18 Missense_Mutation p.R329S 0.12 tolerated(0.07) benign(0.083) TCGA-BR-6452-01 8 53084924 53084924 T A ST18 Missense_Mutation p.E166V 0.15 deleterious(0.01) possibly_damaging(0.696) TCGA-BR-6452-01 8 53853261 53853261 C T NPBWR1 Missense_Mutation p.T265M 0.15 tolerated(0.16) possibly_damaging(0.742) TCGA-BR-6452-01 8 54142295 54142295 G A OPRK1 Silent p.F235F 0.14 TCGA-BR-6452-01 8 54708265 54708265 T A ATP6V1H Missense_Mutation p.D271V 0.07 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 8 54708289 54708289 T C ATP6V1H Missense_Mutation p.Y263C 0.16 tolerated(0.14) benign(0.048) TCGA-BR-6452-01 8 55534123 55534123 C T RP1 Silent p.Y199Y 0.08 TCGA-BR-6452-01 8 56015541 56015541 C T XKR4 Missense_Mutation p.R165C 0.18 deleterious(0) probably_damaging(0.91) TCGA-BR-6452-01 8 56863306 56863306 T C LYN Silent p.A150A 0.10 TCGA-BR-6452-01 8 56922616 56922616 G A LYN Missense_Mutation p.V496I 0.19 tolerated(0.13) probably_damaging(0.989) TCGA-BR-6452-01 8 57026295 57026295 G A MOS Missense_Mutation p.P83S 0.08 tolerated(0.3) possibly_damaging(0.72) TCGA-BR-6452-01 8 57079567 57079567 T G PLAG1 Missense_Mutation p.E246D 0.07 deleterious(0.02) possibly_damaging(0.899) TCGA-BR-6452-01 8 57129004 57129004 T C CHCHD7 Missense_Mutation p.S48P 0.08 deleterious(0) probably_damaging(0.998) TCGA-BR-6452-01 8 57218238 57218238 C G SDR16C5 Missense_Mutation p.E252Q 0.07 tolerated(0.93) benign(0.002) TCGA-BR-6452-01 8 59493089 59493089 C T SDCBP Missense_Mutation p.A255V 0.11 tolerated(0.19) benign(0.01) TCGA-BR-6452-01 8 59506822 59506822 G A NSMAF Silent p.R671R 0.18 TCGA-BR-6452-01 8 614628 614628 A T ERICH1 Missense_Mutation p.I436N 0.08 deleterious(0) probably_damaging(0.952) TCGA-BR-6452-01 8 61743114 61743114 C T CHD7 Silent p.C1252C 0.17 TCGA-BR-6452-01 8 61764653 61764653 G A CHD7 Missense_Mutation p.R1914H 0.15 probably_damaging(0.994) TCGA-BR-6452-01 8 623321 623321 A - ERICH1 Frame_Shift_Del p.L344* 0.10 TCGA-BR-6452-01 8 62577749 62577749 T - ASPH Intron 0.20 TCGA-BR-6452-01 8 6302609 6302609 T A MCPH1 Missense_Mutation p.F456I 0.07 tolerated(0.05) benign(0.036) TCGA-BR-6452-01 8 6302639 6302639 A - MCPH1 Frame_Shift_Del p.T468Pfs*32 0.22 TCGA-BR-6452-01 8 65508820 65508820 T C CYP7B1 3'UTR 0.05 TCGA-BR-6452-01 8 66620183 66620183 C T MTFR1 Silent p.S290S 0.06 TCGA-BR-6452-01 8 66963796 66963796 T C DNAJC5B Missense_Mutation p.I5T 0.13 tolerated_low_confidence(0.33) benign(0) TCGA-BR-6452-01 8 67364293 67364293 C T ADHFE1 Silent p.D280D 0.14 TCGA-BR-6452-01 8 6793553 6793553 G A DEFA4 Missense_Mutation p.R95C 0.15 deleterious_low_confidence(0.02) benign(0.001) TCGA-BR-6452-01 8 68076737 68076737 C A CSPP1 Missense_Mutation p.P936H 0.05 tolerated(0.58) benign(0.002) TCGA-BR-6452-01 8 68111167 68111167 C T ARFGEF1 3'UTR 0.11 TCGA-BR-6452-01 8 68184005 68184006 - A ARFGEF1 Frame_Shift_Ins p.E502* 0.11 TCGA-BR-6452-01 8 68658339 68658339 C T CPA6 Missense_Mutation p.G9D 0.16 tolerated_low_confidence(0.27) benign(0.015) TCGA-BR-6452-01 8 68956765 68956765 C T PREX2 Missense_Mutation p.L295F 0.06 deleterious(0.01) benign(0.131) TCGA-BR-6452-01 8 68965388 68965388 G A PREX2 Missense_Mutation p.A334T 0.17 deleterious(0.04) probably_damaging(0.992) TCGA-BR-6452-01 8 68993075 68993075 T C PREX2 Splice_Site p.X626_splice 0.15 TCGA-BR-6452-01 8 69011996 69011996 C A PREX2 Missense_Mutation p.P878H 0.10 deleterious(0.03) benign(0.371) TCGA-BR-6452-01 8 70971024 70971024 A G PRDM14 Missense_Mutation p.Y413H 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-BR-6452-01 8 70980555 70980555 G A PRDM14 Silent p.I274I 0.08 TCGA-BR-6452-01 8 71068691 71068691 C A NCOA2 Missense_Mutation p.G637W 0.07 deleterious(0) probably_damaging(0.988) TCGA-BR-6452-01 8 72234492 72234492 T C EYA1 Missense_Mutation p.S72G 0.15 deleterious(0.02) probably_damaging(0.99) TCGA-BR-6452-01 8 72755945 72755945 C T MSC Missense_Mutation p.A157T 0.07 deleterious(0.02) probably_damaging(0.979) TCGA-BR-6452-01 8 72987597 72987597 C A TRPA1 Missense_Mutation p.E16D 0.05 tolerated_low_confidence(0.19) benign(0.118) TCGA-BR-6452-01 8 73480200 73480200 C T KCNB2 Silent p.C77C 0.17 TCGA-BR-6452-01 8 73848595 73848595 G T KCNB2 Missense_Mutation p.L335F 0.14 deleterious(0) probably_damaging(0.994) TCGA-BR-6452-01 8 77767582 77767582 G A ZFHX4 Missense_Mutation p.A2809T 0.10 probably_damaging(0.991) TCGA-BR-6452-01 8 77895413 77895413 T C PEX2 3'UTR 0.26 TCGA-BR-6452-01 8 81412243 81412243 A - ZBTB10 Frame_Shift_Del p.I498Lfs*17 0.12 TCGA-BR-6452-01 8 81431715 81431715 C A ZBTB10 Silent p.P856P 0.18 TCGA-BR-6452-01 8 8185778 8185778 G A SGK223 Silent p.P838P 0.13 TCGA-BR-6452-01 8 82196782 82196782 A G FABP5 Missense_Mutation p.I130V 0.09 tolerated(0.82) benign(0.001) TCGA-BR-6452-01 8 82593741 82593741 C T IMPA1 Missense_Mutation p.A78T 0.08 deleterious(0.01) possibly_damaging(0.899) TCGA-BR-6452-01 8 86240749 86240749 G A CA1 3'UTR 0.08 TCGA-BR-6452-01 8 87230005 87230005 C A SLC7A13 Missense_Mutation p.M291I 0.14 tolerated(1) benign(0.001) TCGA-BR-6452-01 8 87443720 87443720 G T WWP1 Splice_Site p.X491_splice 0.13 TCGA-BR-6452-01 8 87570714 87570714 C T CPNE3 3'UTR 0.14 TCGA-BR-6452-01 8 89081664 89081664 G A MMP16 Intron 0.12 TCGA-BR-6452-01 8 89086947 89086947 T C MMP16 Missense_Mutation p.N370D 0.14 tolerated(0.42) benign(0.004) TCGA-BR-6452-01 8 89128833 89128833 G A MMP16 Missense_Mutation p.P329L 0.07 tolerated(0.08) probably_damaging(0.999) TCGA-BR-6452-01 8 8998972 8998972 A G PPP1R3B Missense_Mutation p.S64P 0.06 tolerated(0.08) probably_damaging(0.972) TCGA-BR-6452-01 8 8999110 8999110 G A PPP1R3B Missense_Mutation p.R18C 0.13 deleterious(0.03) benign(0.391) TCGA-BR-6452-01 8 91643787 91643788 - A TMEM64 Frame_Shift_Ins p.C315Lfs*30 0.07 TCGA-BR-6452-01 8 92330603 92330603 T - SLC26A7 Frame_Shift_Del p.Y214Ifs*23 0.09 TCGA-BR-6452-01 8 92374603 92374603 T C SLC26A7 Missense_Mutation p.V446A 0.05 deleterious(0) benign(0.243) TCGA-BR-6452-01 8 9413539 9413539 A G TNKS Silent p.P30P 0.12 TCGA-BR-6452-01 8 94745668 94745668 C T RBM12B Missense_Mutation p.V991I 0.09 tolerated(1) probably_damaging(0.956) TCGA-BR-6452-01 8 94747482 94747482 A G RBM12B Missense_Mutation p.V386A 0.05 tolerated(0.56) benign(0.08) TCGA-BR-6452-01 8 95262598 95262599 - T GEM Frame_Shift_Ins p.N277Kfs*16 0.12 TCGA-BR-6452-01 8 95686611 95686611 A - ESRP1 Frame_Shift_Del p.N512Tfs*2 0.43 TCGA-BR-6452-01 8 95782721 95782721 G A DPY19L4 Missense_Mutation p.R459Q 0.13 tolerated(0.27) benign(0.031) TCGA-BR-6452-01 8 97172915 97172915 A T GDF6 Missense_Mutation p.D2E 0.17 tolerated(0.05) benign(0.36) TCGA-BR-6452-01 9 100074423 100074423 G A CCDC180 Missense_Mutation p.A141T 0.08 tolerated(0.12) possibly_damaging(0.553) TCGA-BR-6452-01 9 100139197 100139197 A - CCDC180 3'UTR 0.10 TCGA-BR-6452-01 9 100222954 100222954 G T TDRD7 Missense_Mutation p.E450D 0.17 tolerated(0.2) benign(0.002) TCGA-BR-6452-01 9 100258217 100258217 A C TDRD7 3'UTR 0.15 TCGA-BR-6452-01 9 100425241 100425241 A G NCBP1 Missense_Mutation p.H570R 0.22 tolerated(0.11) benign(0.119) TCGA-BR-6452-01 9 100433488 100433488 T - NCBP1 3'UTR 0.24 TCGA-BR-6452-01 9 101235552 101235552 T - GABBR2 Frame_Shift_Del p.Q292Rfs*31 0.11 TCGA-BR-6452-01 9 101533295 101533295 G A ANKS6 Missense_Mutation p.P619S 0.18 tolerated(1) benign(0) TCGA-BR-6452-01 9 101980276 101980276 T - ALG2 Frame_Shift_Del p.K397Nfs*47 0.20 TCGA-BR-6452-01 9 102730007 102730007 A - STX17 Frame_Shift_Del p.N220Tfs*2 0.22 TCGA-BR-6452-01 9 103054911 103054911 A G INVS Missense_Mutation p.Q791R 0.08 tolerated_low_confidence(0.19) benign(0.285) TCGA-BR-6452-01 9 103055045 103055045 A G INVS Missense_Mutation p.T836A 0.09 tolerated_low_confidence(0.66) benign(0.005) TCGA-BR-6452-01 9 103102604 103102604 A - TEX10 Frame_Shift_Del p.F395Lfs*2 0.19 TCGA-BR-6452-01 9 103109393 103109393 T A TEX10 Missense_Mutation p.D159V 0.09 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 9 104312974 104312974 T C RNF20 Silent p.N393N 0.10 TCGA-BR-6452-01 9 104356949 104356949 C A PPP3R2 Missense_Mutation p.K88N 0.11 tolerated(0.06) benign(0.007) TCGA-BR-6452-01 9 104385604 104385604 T C GRIN3A Missense_Mutation p.I870M 0.06 tolerated(0.08) benign(0.078) TCGA-BR-6452-01 9 104385638 104385638 C T GRIN3A Missense_Mutation p.C859Y 0.07 deleterious(0) probably_damaging(0.947) TCGA-BR-6452-01 9 106900323 106900323 A G SMC2 Missense_Mutation p.I1098M 0.09 deleterious(0) probably_damaging(0.995) TCGA-BR-6452-01 9 107289076 107289076 C T OR13C4 Missense_Mutation p.V139M 0.12 tolerated(0.09) benign(0.043) TCGA-BR-6452-01 9 107289113 107289113 G C OR13C4 Missense_Mutation p.I126M 0.13 deleterious(0) possibly_damaging(0.695) TCGA-BR-6452-01 9 107361037 107361037 A T OR13C5 Missense_Mutation p.L220I 0.09 deleterious(0) possibly_damaging(0.832) TCGA-BR-6452-01 9 107457074 107457074 C A OR13D1 Silent p.I124I 0.07 TCGA-BR-6452-01 9 109689705 109689705 C - ZNF462 Frame_Shift_Del p.I1173Yfs*4 0.14 TCGA-BR-6452-01 9 111617647 111617647 G A ACTL7B Silent p.S188S 0.33 TCGA-BR-6452-01 9 111625473 111625473 A G ACTL7A Missense_Mutation p.K291E 0.07 tolerated(0.5) benign(0.14) TCGA-BR-6452-01 9 111625641 111625641 G A ACTL7A Missense_Mutation p.D347N 0.10 deleterious(0.02) probably_damaging(0.999) TCGA-BR-6452-01 9 111697919 111697919 T C FAM206A Silent p.D27D 0.09 TCGA-BR-6452-01 9 112542659 112542659 G A PALM2-AKAP2 5'UTR 0.14 TCGA-BR-6452-01 9 113169574 113169574 C T SVEP1 Missense_Mutation p.R2769H 0.23 benign(0.001) TCGA-BR-6452-01 9 113637717 113637717 T A LPAR1 Missense_Mutation p.D360V 0.11 deleterious(0.04) benign(0.159) TCGA-BR-6452-01 9 114124268 114124268 C T KIAA0368 3'UTR 0.05 TCGA-BR-6452-01 9 114305075 114305075 G A ZNF483 Silent p.T620T 0.24 TCGA-BR-6452-01 9 114337052 114337052 G A PTGR1 Missense_Mutation p.A241V 0.10 deleterious(0.01) benign(0.371) TCGA-BR-6452-01 9 114456540 114456540 T C C9orf84 Missense_Mutation p.K1032E 0.09 deleterious(0) probably_damaging(0.998) TCGA-BR-6452-01 9 115166290 115166290 T C HSDL2 Silent p.C11C 0.10 TCGA-BR-6452-01 9 115600867 115600867 T A SNX30 Missense_Mutation p.S302T 0.09 tolerated(0.06) benign(0.416) TCGA-BR-6452-01 9 115931875 115931875 T C FKBP15 Silent p.L1038L 0.09 TCGA-BR-6452-01 9 115936846 115936846 T C FKBP15 Silent p.K747K 0.09 TCGA-BR-6452-01 9 116049018 116049018 A G PRPF4 Missense_Mutation p.H282R 0.08 tolerated(0.07) possibly_damaging(0.682) TCGA-BR-6452-01 9 116151752 116151752 G T ALAD Missense_Mutation p.P256H 0.19 deleterious(0.02) probably_damaging(0.99) TCGA-BR-6452-01 9 116359109 116359109 G A RGS3 Missense_Mutation p.G1158D 0.09 deleterious(0.04) possibly_damaging(0.453) TCGA-BR-6452-01 9 117366 117366 C T FOXD4 Missense_Mutation p.G252R 0.31 tolerated(0.17) probably_damaging(0.989) TCGA-BR-6452-01 9 117819512 117819512 G - TNC Frame_Shift_Del p.P1500Lfs*36 0.08 TCGA-BR-6452-01 9 119065092 119065093 - A PAPPA Frame_Shift_Ins p.T1006Nfs*4 0.31 TCGA-BR-6452-01 9 119460783 119460783 G A TRIM32 Silent p.L254L 0.23 TCGA-BR-6452-01 9 120476261 120476261 C T TLR4 Missense_Mutation p.P619S 0.10 tolerated(0.6) benign(0.003) TCGA-BR-6452-01 9 123210340 123210340 C T CDK5RAP2 Missense_Mutation p.R953H 0.31 tolerated(0.69) possibly_damaging(0.84) TCGA-BR-6452-01 9 123782388 123782388 A T C5 Missense_Mutation p.S458T 0.06 tolerated(0.12) benign(0.031) TCGA-BR-6452-01 9 123914741 123914741 T - CNTRL Intron 0.24 TCGA-BR-6452-01 9 124081025 124081025 G A GSN Missense_Mutation p.G404D 0.12 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 9 124535066 124535066 C T DAB2IP Silent p.D725D 0.20 TCGA-BR-6452-01 9 124906577 124906577 G A NDUFA8 Silent p.I154I 0.18 TCGA-BR-6452-01 9 125009820 125009820 G A RBM18 Nonsense_Mutation p.R102* 0.23 TCGA-BR-6452-01 9 125330036 125330036 T C OR1L8 Missense_Mutation p.T241A 0.13 deleterious(0) possibly_damaging(0.9) TCGA-BR-6452-01 9 125551853 125551853 G A OR5C1 Silent p.T214T 0.11 TCGA-BR-6452-01 9 125551886 125551886 C T OR5C1 Silent p.I225I 0.19 TCGA-BR-6452-01 9 125562695 125562695 C G OR1K1 Missense_Mutation p.C98W 0.25 deleterious(0) probably_damaging(0.995) TCGA-BR-6452-01 9 125617543 125617543 G A RC3H2 Missense_Mutation p.S912F 0.11 deleterious(0) probably_damaging(0.982) TCGA-BR-6452-01 9 125673310 125673310 G T ZBTB6 Missense_Mutation p.H348N 0.20 deleterious(0) probably_damaging(0.995) TCGA-BR-6452-01 9 125836696 125836696 C T RABGAP1 Missense_Mutation p.L748F 0.10 tolerated(1) possibly_damaging(0.864) TCGA-BR-6452-01 9 126144873 126144873 C T DENND1A Missense_Mutation p.R623H 0.23 deleterious(0.04) benign(0.008) TCGA-BR-6452-01 9 126214597 126214597 T C DENND1A Silent p.V419V 0.10 TCGA-BR-6452-01 9 127298343 127298343 T C NR6A1 Missense_Mutation p.Q298R 0.19 deleterious(0.03) probably_damaging(0.95) TCGA-BR-6452-01 9 127316748 127316748 C A NR6A1 Missense_Mutation p.G82W 0.12 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 9 127911893 127911893 A G PPP6C 3'UTR 0.15 TCGA-BR-6452-01 9 127996243 127996243 T G RABEPK Missense_Mutation p.V368G 0.21 deleterious(0.02) possibly_damaging(0.493) TCGA-BR-6452-01 9 128347881 128347881 C T MAPKAP1 Silent p.G208G 0.09 TCGA-BR-6452-01 9 129458638 129458638 C A LMX1B Missense_Mutation p.L377I 0.20 tolerated(0.15) possibly_damaging(0.485) TCGA-BR-6452-01 9 129740006 129740006 T C RALGPS1 Silent p.F66F 0.10 TCGA-BR-6452-01 9 130073930 130073930 C T GARNL3 Missense_Mutation p.P79S 0.09 tolerated(0.38) probably_damaging(0.998) TCGA-BR-6452-01 9 130083001 130083001 A G GARNL3 Missense_Mutation p.N171D 0.14 tolerated(0.29) benign(0.219) TCGA-BR-6452-01 9 130219605 130219605 T A LRSAM1 Missense_Mutation p.V62D 0.15 deleterious(0) possibly_damaging(0.812) TCGA-BR-6452-01 9 130265165 130265165 A G LRSAM1 Missense_Mutation p.Y720C 0.15 deleterious(0) possibly_damaging(0.905) TCGA-BR-6452-01 9 130471736 130471738 AGA - C9orf117 In_Frame_Del p.K67del 0.15 TCGA-BR-6452-01 9 13107034 13107034 A G MPDZ Missense_Mutation p.V2019A 0.19 deleterious(0.04) probably_damaging(0.996) TCGA-BR-6452-01 9 131107478 131107478 G A SLC27A4 Missense_Mutation p.C69Y 0.21 tolerated(0.6) benign(0) TCGA-BR-6452-01 9 131262534 131262534 A T ODF2 Nonstop_Mutation p.*830Cext*23 0.22 TCGA-BR-6452-01 9 131262572 131262572 T C ODF2 3'UTR 0.08 TCGA-BR-6452-01 9 131337514 131337514 C A SPTAN1 Missense_Mutation p.L181M 0.08 tolerated(0.08) probably_damaging(0.972) TCGA-BR-6452-01 9 131387430 131387430 C A SPTAN1 Missense_Mutation p.S2014Y 0.12 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 9 131399212 131399212 G A WDR34 Missense_Mutation p.A177V 0.12 deleterious(0) probably_damaging(0.961) TCGA-BR-6452-01 9 131559484 131559484 G T TBC1D13 Silent p.G178G 0.14 TCGA-BR-6452-01 9 131591016 131591016 C T C9orf114 Missense_Mutation p.R69H 0.11 tolerated(0.23) benign(0.001) TCGA-BR-6452-01 9 131591120 131591120 T - C9orf114 Frame_Shift_Del p.K34Nfs*7 0.28 TCGA-BR-6452-01 9 131670363 131670363 C T LRRC8A Missense_Mutation p.T307I 0.14 tolerated(0.31) benign(0.004) TCGA-BR-6452-01 9 13168518 13168518 C T MPDZ Missense_Mutation p.R1034Q 0.22 deleterious(0) probably_damaging(0.994) TCGA-BR-6452-01 9 131741566 131741566 T C NUP188 Missense_Mutation p.V410A 0.12 deleterious(0) probably_damaging(0.975) TCGA-BR-6452-01 9 131755596 131755596 T C NUP188 Missense_Mutation p.F921L 0.13 tolerated(0.25) possibly_damaging(0.585) TCGA-BR-6452-01 9 131862874 131862874 G A CRAT Silent p.Y300Y 0.10 TCGA-BR-6452-01 9 131890312 131890312 C G PPP2R4 Intron 0.25 TCGA-BR-6452-01 9 131897123 131897123 G T PPP2R4 Silent p.G170G 0.17 TCGA-BR-6452-01 9 132084570 132084570 G A C9orf106 RNA 0.11 TCGA-BR-6452-01 9 132400113 132400113 A G ASB6 Missense_Mutation p.Y408H 0.11 deleterious_low_confidence(0) possibly_damaging(0.875) TCGA-BR-6452-01 9 13247792 13247792 G A MPDZ Missense_Mutation p.R9W 0.08 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 9 132482979 132482979 C T PRRX2 Silent p.I184I 0.15 TCGA-BR-6452-01 9 133511486 133511486 G A FUBP3 Silent p.T561T 0.25 TCGA-BR-6452-01 9 133901837 133901837 G A LAMC3 Missense_Mutation p.R180H 0.26 deleterious(0.04) benign(0.262) TCGA-BR-6452-01 9 134090704 134090704 A - NUP214 Frame_Shift_Del p.N1901Tfs*242 0.08 TCGA-BR-6452-01 9 134305536 134305536 C T PRRC2B Missense_Mutation p.S2F 0.25 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 9 134351905 134351905 G A PRRC2B Silent p.T1463T 0.26 TCGA-BR-6452-01 9 134465325 134465325 G A RAPGEF1 Missense_Mutation p.R771C 0.15 deleterious(0) probably_damaging(0.996) TCGA-BR-6452-01 9 134612846 134612847 TG - RAPGEF1 5'UTR 0.09 TCGA-BR-6452-01 9 135116397 135116397 C T NTNG2 Silent p.C441C 0.21 TCGA-BR-6452-01 9 135139591 135139591 A G SETX 3'UTR 0.06 TCGA-BR-6452-01 9 135187172 135187172 G A SETX Silent p.A1782A 0.16 TCGA-BR-6452-01 9 135202582 135202582 C - SETX Frame_Shift_Del p.G1468Vfs*8 0.20 TCGA-BR-6452-01 9 135275582 135275582 T A TTF1 Missense_Mutation p.L477F 0.11 deleterious(0.03) possibly_damaging(0.724) TCGA-BR-6452-01 9 135277202 135277202 T - TTF1 Frame_Shift_Del p.K336Rfs*87 0.10 TCGA-BR-6452-01 9 135554007 135554007 G T GTF3C4 Missense_Mutation p.G334V 0.07 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 9 135772974 135772974 G T TSC1 Silent p.A883A 0.07 TCGA-BR-6452-01 9 135865239 135865239 C T GFI1B Silent p.C253C 0.31 TCGA-BR-6452-01 9 136402566 136402566 G A ADAMTSL2 Missense_Mutation p.D44N 0.21 deleterious(0) benign(0.013) TCGA-BR-6452-01 9 136412226 136412226 T C ADAMTSL2 Missense_Mutation p.F277S 0.20 deleterious(0) probably_damaging(0.986) TCGA-BR-6452-01 9 136529132 136529132 G A SARDH Missense_Mutation p.S879L 0.09 deleterious(0) possibly_damaging(0.612) TCGA-BR-6452-01 9 136650998 136650998 C T VAV2 Missense_Mutation p.G478S 0.13 tolerated(0.27) probably_damaging(0.99) TCGA-BR-6452-01 9 136656961 136656961 G A VAV2 Missense_Mutation p.R378W 0.24 deleterious(0.01) benign(0.006) TCGA-BR-6452-01 9 136662845 136662845 C T VAV2 Missense_Mutation p.R308K 0.16 tolerated(0.21) benign(0.107) TCGA-BR-6452-01 9 136901428 136901428 G A BRD3 Silent p.G554G 0.08 TCGA-BR-6452-01 9 136917543 136917543 T - BRD3 Frame_Shift_Del p.N79Tfs*12 0.21 TCGA-BR-6452-01 9 136918499 136918499 C T BRD3 Missense_Mutation p.R34H 0.14 deleterious(0.03) possibly_damaging(0.734) TCGA-BR-6452-01 9 137658311 137658311 T C COL5A1 Silent p.G700G 0.10 TCGA-BR-6452-01 9 137676927 137676928 - C COL5A1 Frame_Shift_Ins p.G862Wfs*59 0.18 TCGA-BR-6452-01 9 138377887 138377887 C T PPP1R26 Missense_Mutation p.L511F 0.12 tolerated(0.15) benign(0.038) TCGA-BR-6452-01 9 138379043 138379043 G - PPP1R26 Frame_Shift_Del p.V898Sfs*56 0.27 TCGA-BR-6452-01 9 138413364 138413364 C T LCN1 Silent p.A7A 0.14 TCGA-BR-6452-01 9 138594154 138594154 C T KCNT1 Missense_Mutation p.A17V 0.18 tolerated_low_confidence(0.16) benign(0) TCGA-BR-6452-01 9 138713275 138713275 G A CAMSAP1 Missense_Mutation p.P1078S 0.13 tolerated(0.07) benign(0.298) TCGA-BR-6452-01 9 138713714 138713714 C T CAMSAP1 Silent p.R931R 0.24 TCGA-BR-6452-01 9 139306576 139306576 A G PMPCA Missense_Mutation p.T67A 0.06 tolerated(0.07) possibly_damaging(0.468) TCGA-BR-6452-01 9 139326422 139326422 C T INPP5E Missense_Mutation p.R468H 0.20 deleterious(0) benign(0.054) TCGA-BR-6452-01 9 139616665 139616665 C - FAM69B Frame_Shift_Del p.R134Gfs*22 0.18 TCGA-BR-6452-01 9 139757745 139757745 C T EDF1 Missense_Mutation p.A96T 0.23 deleterious(0) probably_damaging(0.996) TCGA-BR-6452-01 9 139925299 139925299 A G FUT7 Missense_Mutation p.F298L 0.07 deleterious(0.03) benign(0.135) TCGA-BR-6452-01 9 140082263 140082263 C T ANAPC2 Missense_Mutation p.R137H 0.12 tolerated(0.1) benign(0.115) TCGA-BR-6452-01 9 140100743 140100743 C - NDOR1 Frame_Shift_Del p.P67Lfs*4 0.12 TCGA-BR-6452-01 9 140137541 140137543 CAG - TUBB4B In_Frame_Del p.Q292del 0.27 TCGA-BR-6452-01 9 140347525 140347525 C T NSMF Missense_Mutation p.V344M 0.08 deleterious(0.01) possibly_damaging(0.475) TCGA-BR-6452-01 9 140476996 140476996 C T ZMYND19 Silent p.%3D 0.09 TCGA-BR-6452-01 9 140507931 140507931 G A ARRDC1 Silent p.E83E 0.21 TCGA-BR-6452-01 9 140671153 140671153 C T EHMT1 Silent p.S625S 0.07 TCGA-BR-6452-01 9 140948380 140948380 C T CACNA1B Missense_Mutation p.A1297V 0.09 deleterious(0) probably_damaging(0.991) TCGA-BR-6452-01 9 140995577 140995577 T C CACNA1B Intron 0.12 TCGA-BR-6452-01 9 14756389 14756389 A G FREM1 Missense_Mutation p.L1797P 0.25 deleterious(0) probably_damaging(0.995) TCGA-BR-6452-01 9 16583063 16583063 T C BNC2 Silent p.V117V 0.09 TCGA-BR-6452-01 9 17394904 17394904 C T CNTLN Nonsense_Mutation p.R818* 0.16 TCGA-BR-6452-01 9 18504839 18504839 G A ADAMTSL1 Missense_Mutation p.A26T 0.09 tolerated(0.72) probably_damaging(0.985) TCGA-BR-6452-01 9 18826377 18826377 T C ADAMTSL1 Missense_Mutation p.S1344P 0.10 deleterious(0) possibly_damaging(0.529) TCGA-BR-6452-01 9 18928404 18928404 G A FAM154A Silent p.P357P 0.21 TCGA-BR-6452-01 9 18941824 18941824 G A FAM154A Missense_Mutation p.P78S 0.10 tolerated(0.07) benign(0.41) TCGA-BR-6452-01 9 19063047 19063047 T - HAUS6 Frame_Shift_Del p.S530Vfs*12 0.22 TCGA-BR-6452-01 9 19296164 19296164 T - DENND4C Frame_Shift_Del p.F322Lfs*55 0.22 TCGA-BR-6452-01 9 19446249 19446249 C T ACER2 Intron 0.22 TCGA-BR-6452-01 9 2039604 2039604 G A SMARCA2 Missense_Mutation p.S165N 0.08 benign(0.003) TCGA-BR-6452-01 9 2039854 2039854 G A SMARCA2 Silent p.T248T 0.24 TCGA-BR-6452-01 9 20881935 20881935 C T FOCAD Missense_Mutation p.H795Y 0.08 deleterious(0.02) benign(0.055) TCGA-BR-6452-01 9 21409397 21409397 T A IFNA8 Silent p.A74A 0.12 TCGA-BR-6452-01 9 214550 214550 G - C9orf66 Frame_Shift_Del p.H283Tfs*19 0.12 TCGA-BR-6452-01 9 21481336 21481336 G T IFNE Missense_Mutation p.L120I 0.11 deleterious(0.01) possibly_damaging(0.597) TCGA-BR-6452-01 9 2170423 2170423 A G SMARCA2 Missense_Mutation p.N1402D 0.09 benign(0.292) TCGA-BR-6452-01 9 22447088 22447088 C G DMRTA1 Missense_Mutation p.S8R 0.24 tolerated_low_confidence(0.28) benign(0.001) TCGA-BR-6452-01 9 2635505 2635505 T C VLDLR Silent p.C45C 0.08 TCGA-BR-6452-01 9 2648781 2648781 T C VLDLR Missense_Mutation p.I692T 0.10 tolerated(0.06) possibly_damaging(0.864) TCGA-BR-6452-01 9 26842414 26842414 G T CAAP1 Missense_Mutation p.P324H 0.18 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 9 26919405 26919405 A T PLAA Missense_Mutation p.N440K 0.07 deleterious(0.01) possibly_damaging(0.489) TCGA-BR-6452-01 9 26997993 26997993 A G LRRC19 Missense_Mutation p.Y110H 0.11 tolerated(0.57) benign(0.003) TCGA-BR-6452-01 9 27455355 27455355 A G MOB3B Missense_Mutation p.V65A 0.07 deleterious(0) probably_damaging(0.996) TCGA-BR-6452-01 9 2838446 2838446 T - KIAA0020 Frame_Shift_Del p.N21Tfs*45 0.21 TCGA-BR-6452-01 9 32630784 32630784 A G TAF1L Silent p.S1598S 0.08 TCGA-BR-6452-01 9 32634929 32634929 C T TAF1L Missense_Mutation p.A217T 0.09 tolerated(0.26) benign(0.002) TCGA-BR-6452-01 9 33290542 33290542 A G NFX1 5'UTR 0.09 TCGA-BR-6452-01 9 33468037 33468037 T C NOL6 Missense_Mutation p.H472R 0.07 deleterious(0.01) probably_damaging(0.983) TCGA-BR-6452-01 9 33675762 33675762 A G PTENP1 RNA 0.11 TCGA-BR-6452-01 9 33676298 33676298 G C PTENP1 RNA 0.21 TCGA-BR-6452-01 9 34256008 34256008 T C KIF24 Silent p.V1199V 0.07 TCGA-BR-6452-01 9 34343290 34343290 A G NUDT2 Missense_Mutation p.K99R 0.06 tolerated(0.35) benign(0.096) TCGA-BR-6452-01 9 34371038 34371038 C T KIAA1161 Missense_Mutation p.R601H 0.12 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 9 34372048 34372048 A G KIAA1161 Silent p.R264R 0.30 TCGA-BR-6452-01 9 34646774 34646774 C A GALT Silent p.R25R 0.10 TCGA-BR-6452-01 9 34971621 34971621 G A KIAA1045 Missense_Mutation p.R109Q 0.08 deleterious(0) possibly_damaging(0.877) TCGA-BR-6452-01 9 34978047 34978047 T A KIAA1045 Missense_Mutation p.V381D 0.07 deleterious(0.01) benign(0.429) TCGA-BR-6452-01 9 35043238 35043238 C T C9orf131 Silent p.S204S 0.07 TCGA-BR-6452-01 9 35043650 35043650 C - C9orf131 Frame_Shift_Del p.C344Afs*49 0.27 TCGA-BR-6452-01 9 35045452 35045453 - A C9orf131 Frame_Shift_Ins p.R945Efs*5 0.11 TCGA-BR-6452-01 9 35078616 35078616 C T FANCG Missense_Mutation p.R98Q 0.17 tolerated(1) benign(0.003) TCGA-BR-6452-01 9 35107420 35107420 G T FAM214B Silent p.P284P 0.10 TCGA-BR-6452-01 9 35380473 35380473 C T UNC13B Silent p.C655C 0.10 TCGA-BR-6452-01 9 35382434 35382434 C T UNC13B Missense_Mutation p.A830V 0.08 deleterious(0) probably_damaging(0.916) TCGA-BR-6452-01 9 35547295 35547295 C T RUSC2 Silent p.S259S 0.15 TCGA-BR-6452-01 9 35547634 35547634 G A RUSC2 Silent p.P372P 0.10 TCGA-BR-6452-01 9 35609008 35609008 C T TESK1 Missense_Mutation p.R384W 0.28 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 9 35650822 35650822 G A SIT1 Missense_Mutation p.A10V 0.17 tolerated_low_confidence(0.4) benign(0.005) TCGA-BR-6452-01 9 35660535 35660535 T - CCDC107 Intron 0.22 TCGA-BR-6452-01 9 35685136 35685136 G A TPM2 Silent p.S188S 0.11 TCGA-BR-6452-01 9 35813042 35813042 T C HINT2 3'UTR 0.07 TCGA-BR-6452-01 9 37440560 37440560 G A ZBTB5 Silent p.T663T 0.12 TCGA-BR-6452-01 9 37888102 37888102 T G SLC25A51 Missense_Mutation p.K149T 0.10 tolerated(0.05) benign(0.089) TCGA-BR-6452-01 9 3898791 3898791 G A GLIS3 Silent p.C676C 0.24 TCGA-BR-6452-01 9 4117945 4117945 G A GLIS3 Silent p.Y511Y 0.10 TCGA-BR-6452-01 9 43627287 43627287 A - SPATA31A6 Frame_Shift_Del p.F467Sfs*47 0.17 TCGA-BR-6452-01 9 43630570 43630570 G T SPATA31A6 Silent p.P44P 0.06 TCGA-BR-6452-01 9 5557640 5557640 T A PDCD1LG2 Missense_Mutation p.H218Q 0.08 tolerated(0.24) benign(0.013) TCGA-BR-6452-01 9 6015259 6015260 - T RANBP6 Frame_Shift_Ins p.L117Tfs*3 0.18 TCGA-BR-6452-01 9 7013971 7013971 T C KDM4C Missense_Mutation p.C718R 0.08 deleterious(0) probably_damaging(0.965) TCGA-BR-6452-01 9 70918913 70918913 G A FOXD4L3 Missense_Mutation p.R349H 0.10 deleterious_low_confidence(0.03) benign(0) TCGA-BR-6452-01 9 70999325 70999325 G A PGM5 Missense_Mutation p.D146N 0.08 deleterious(0.01) possibly_damaging(0.608) TCGA-BR-6452-01 9 710960 710960 A C KANK1 Missense_Mutation p.K65T 0.09 deleterious(0) possibly_damaging(0.74) TCGA-BR-6452-01 9 71836211 71836211 C T TJP2 Nonsense_Mutation p.R282* 0.25 TCGA-BR-6452-01 9 72338404 72338404 G T PTAR1 Missense_Mutation p.P262H 0.11 tolerated(0.61) benign(0.002) TCGA-BR-6452-01 9 72521056 72521056 T A C9orf135 3'UTR 0.10 TCGA-BR-6452-01 9 73002756 73002756 C T KLF9 Missense_Mutation p.R224Q 0.20 deleterious(0) probably_damaging(0.98) TCGA-BR-6452-01 9 74305064 74305064 A - TMEM2 Frame_Shift_Del p.P1266Lfs*12 0.14 TCGA-BR-6452-01 9 74315635 74315635 T A TMEM2 Missense_Mutation p.E1100D 0.08 tolerated(1) benign(0.001) TCGA-BR-6452-01 9 745267 745267 A G KANK1 3'UTR 0.14 TCGA-BR-6452-01 9 74817550 74817550 A G GDA Silent p.G92G 0.08 TCGA-BR-6452-01 9 75355124 75355124 A C TMC1 Missense_Mutation p.K151T 0.21 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 9 75450918 75450918 C T TMC1 3'UTR 0.20 TCGA-BR-6452-01 9 77280434 77280434 G A RORB Missense_Mutation p.C308Y 0.10 deleterious(0) probably_damaging(0.992) TCGA-BR-6452-01 9 77755767 77755767 A G OSTF1 Missense_Mutation p.R169G 0.07 deleterious(0.04) benign(0.361) TCGA-BR-6452-01 9 78953147 78953147 T C PCSK5 Missense_Mutation p.Y1557H 0.13 tolerated(0.64) probably_damaging(0.99) TCGA-BR-6452-01 9 79323928 79323928 A G PRUNE2 Missense_Mutation p.Y1088H 0.06 deleterious(0) probably_damaging(0.99) TCGA-BR-6452-01 9 79465470 79465470 A G PRUNE2 Missense_Mutation p.F85L 0.06 deleterious(0.01) benign(0.123) TCGA-BR-6452-01 9 79840849 79840849 A - VPS13A Frame_Shift_Del p.T392Pfs*7 0.18 TCGA-BR-6452-01 9 79896801 79896801 G A VPS13A Missense_Mutation p.D975N 0.08 tolerated(0.55) benign(0.002) TCGA-BR-6452-01 9 79946953 79946953 T C VPS13A Missense_Mutation p.S2007P 0.12 tolerated(0.24) benign(0.106) TCGA-BR-6452-01 9 79984308 79984308 T - VPS13A Frame_Shift_Del p.Y2885Mfs*20 0.24 TCGA-BR-6452-01 9 80144131 80144131 T C GNA14 Missense_Mutation p.M55V 0.09 deleterious(0) possibly_damaging(0.898) TCGA-BR-6452-01 9 80343493 80343493 T C GNAQ Missense_Mutation p.K276E 0.08 tolerated(0.08) benign(0.037) TCGA-BR-6452-01 9 80943013 80943013 C T PSAT1 Missense_Mutation p.R306C 0.10 tolerated(0.09) benign(0.249) TCGA-BR-6452-01 9 82242307 82242307 C T TLE4 Nonsense_Mutation p.Q112* 0.10 TCGA-BR-6452-01 9 84199195 84199195 C T TLE1 Missense_Mutation p.S744N 0.07 deleterious(0) probably_damaging(0.997) TCGA-BR-6452-01 9 84248267 84248267 C T TLE1 Missense_Mutation p.G197D 0.19 tolerated(0.25) benign(0.001) TCGA-BR-6452-01 9 84606581 84606581 T C SPATA31D1 Missense_Mutation p.I399T 0.08 tolerated(0.09) benign(0.171) TCGA-BR-6452-01 9 84607051 84607051 C T SPATA31D1 Missense_Mutation p.P556S 0.10 tolerated(0.14) probably_damaging(0.94) TCGA-BR-6452-01 9 84608052 84608052 C A SPATA31D1 Silent p.S889S 0.07 TCGA-BR-6452-01 9 85612040 85612040 A T RASEF Missense_Mutation p.F603I 0.10 deleterious(0) possibly_damaging(0.897) TCGA-BR-6452-01 9 86294735 86294735 A T UBQLN1 Missense_Mutation p.N222K 0.11 deleterious(0) possibly_damaging(0.787) TCGA-BR-6452-01 9 87285819 87285819 C T NTRK2 Silent p.I52I 0.24 TCGA-BR-6452-01 9 87635214 87635214 G A NTRK2 Missense_Mutation p.G756R 0.09 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 9 88943388 88943388 C T ZCCHC6 Missense_Mutation p.S492N 0.10 tolerated(1) benign(0) TCGA-BR-6452-01 9 90503684 90503684 G A SPATA31E1 Missense_Mutation p.G1428S 0.16 tolerated(0.62) benign(0.436) TCGA-BR-6452-01 9 90535543 90535543 C A SPATA31C1 RNA 0.07 TCGA-BR-6452-01 9 91607006 91607006 A G C9orf47 3'UTR 0.16 TCGA-BR-6452-01 9 91617218 91617218 A G S1PR3 Missense_Mutation p.N368S 0.10 tolerated_low_confidence(0.25) benign(0.003) TCGA-BR-6452-01 9 92003858 92003858 C T SEMA4D Silent p.L293L 0.08 TCGA-BR-6452-01 9 92008521 92008521 C T SEMA4D Missense_Mutation p.R155K 0.08 tolerated(1) benign(0.049) TCGA-BR-6452-01 9 93636501 93636501 G A SYK Missense_Mutation p.G311R 0.09 tolerated(0.54) benign(0.002) TCGA-BR-6452-01 9 93979588 93979588 C T AUH Missense_Mutation p.A289T 0.08 deleterious(0.01) probably_damaging(0.987) TCGA-BR-6452-01 9 94172249 94172249 T C NFIL3 Silent p.S256S 0.08 TCGA-BR-6452-01 9 94487031 94487031 G A ROR2 Missense_Mutation p.T582M 0.24 deleterious(0.03) benign(0.223) TCGA-BR-6452-01 9 95077604 95077604 C T NOL8 Missense_Mutation p.E435K 0.13 tolerated(0.48) benign(0.01) TCGA-BR-6452-01 9 95165785 95165785 C T OGN 5'UTR 0.32 TCGA-BR-6452-01 9 95418797 95418797 C T IPPK Missense_Mutation p.V56M 0.28 deleterious(0.05) possibly_damaging(0.765) TCGA-BR-6452-01 9 95482980 95482980 G A BICD2 Missense_Mutation p.L222F 0.11 deleterious(0) probably_damaging(0.988) TCGA-BR-6452-01 9 95485026 95485026 C T BICD2 Missense_Mutation p.R173Q 0.15 deleterious(0) probably_damaging(0.987) TCGA-BR-6452-01 9 95780478 95780478 T A FGD3 Missense_Mutation p.S446T 0.10 tolerated(0.69) possibly_damaging(0.73) TCGA-BR-6452-01 9 95795136 95795136 T C FGD3 Missense_Mutation p.V589A 0.09 tolerated(0.84) benign(0.002) TCGA-BR-6452-01 9 96051831 96051831 G - WNK2 Frame_Shift_Del p.D1638Tfs*35 0.31 TCGA-BR-6452-01 9 96294524 96294524 T C FAM120A Missense_Mutation p.Y608H 0.10 tolerated(0.11) benign(0.07) TCGA-BR-6452-01 9 96864017 96864017 T - PTPDC1 Frame_Shift_Del p.L728Yfs*2 0.29 TCGA-BR-6452-01 9 98209422 98209422 C A PTCH1 Silent p.T1372T 0.15 TCGA-BR-6452-01 9 98222017 98222017 C T PTCH1 Missense_Mutation p.A918T 0.25 tolerated(0.2) possibly_damaging(0.786) TCGA-BR-6452-01 9 98231206 98231206 T C PTCH1 Missense_Mutation p.T693A 0.08 tolerated(0.87) benign(0.008) TCGA-BR-6452-01 9 98232174 98232174 G A PTCH1 Missense_Mutation p.L590F 0.11 tolerated(0.11) possibly_damaging(0.652) TCGA-BR-6452-01 9 98242681 98242681 A T PTCH1 Missense_Mutation p.N312K 0.10 tolerated(0.79) benign(0.032) TCGA-BR-6452-01 9 98678046 98678046 C G ERCC6L2 Silent p.V306V 0.11 TCGA-BR-6452-01 9 990339 990339 G A DMRT3 Silent p.P251P 0.07 TCGA-BR-6452-01 9 99521344 99521344 G A ZNF510 Missense_Mutation p.H590Y 0.09 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 9 99522242 99522242 A T ZNF510 Missense_Mutation p.N290K 0.08 tolerated(0.26) benign(0.012) TCGA-BR-6452-01 X 100104913 100104913 C T NOX1 Missense_Mutation p.D382N 0.11 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 X 100169342 100169342 C T XKRX Silent p.R445R 0.08 TCGA-BR-6452-01 X 100177865 100177865 A T XKRX Missense_Mutation p.I174N 0.09 deleterious(0) probably_damaging(0.972) TCGA-BR-6452-01 X 100292924 100292924 G A TRMT2B Silent p.L140L 0.07 TCGA-BR-6452-01 X 100334082 100334082 A G TMEM35 Missense_Mutation p.R31G 0.31 tolerated(0.3) probably_damaging(0.994) TCGA-BR-6452-01 X 100349662 100349662 C T TMEM35 Missense_Mutation p.A74V 0.16 tolerated(0.94) benign(0.003) TCGA-BR-6452-01 X 100349842 100349842 A G TMEM35 Missense_Mutation p.K134R 0.12 tolerated(0.08) benign(0.036) TCGA-BR-6452-01 X 100515554 100515554 G A DRP2 Missense_Mutation p.A940T 0.06 tolerated(0.65) benign(0.211) TCGA-BR-6452-01 X 10058909 10058909 C T WWC3 Missense_Mutation p.T159I 0.19 deleterious(0.01) possibly_damaging(0.537) TCGA-BR-6452-01 X 100608210 100608210 T C BTK Missense_Mutation p.Y627C 0.09 deleterious(0.02) probably_damaging(0.997) TCGA-BR-6452-01 X 10077876 10077876 G A WWC3 Missense_Mutation p.A264T 0.17 tolerated(0.18) probably_damaging(0.925) TCGA-BR-6452-01 X 100808785 100808785 T C ARMCX1 Missense_Mutation p.V291A 0.11 deleterious(0) probably_damaging(0.992) TCGA-BR-6452-01 X 101095513 101095513 T C NXF5 Missense_Mutation p.N219S 0.09 tolerated(0.1) benign(0.239) TCGA-BR-6452-01 X 101152909 101152909 G A ZMAT1 Missense_Mutation p.A146V 0.08 tolerated(0.08) benign(0.025) TCGA-BR-6452-01 X 101382346 101382346 A T TCEAL2 Nonsense_Mutation p.R182* 0.06 TCGA-BR-6452-01 X 101818154 101818154 A G NXF4 RNA 0.09 TCGA-BR-6452-01 X 101972362 101972362 C A GPRASP2 3'UTR 0.18 TCGA-BR-6452-01 X 102318123 102318123 A T BEX1 Missense_Mutation p.V27D 0.10 tolerated(0.8) benign(0.002) TCGA-BR-6452-01 X 102337215 102337215 G A NXF3 Silent p.C286C 0.07 TCGA-BR-6452-01 X 102842091 102842091 C T TCEAL4 Missense_Mutation p.A163V 0.10 tolerated(0.05) probably_damaging(0.963) TCGA-BR-6452-01 X 103499107 103499107 G A ESX1 Silent p.G78G 0.24 TCGA-BR-6452-01 X 105279292 105279292 G A SERPINA7 Missense_Mutation p.P236L 0.06 deleterious(0.03) probably_damaging(0.993) TCGA-BR-6452-01 X 105875884 105875884 A G CXorf57 Missense_Mutation p.T337A 0.09 tolerated(0.22) benign(0.013) TCGA-BR-6452-01 X 106028294 106028294 G A RNF128 Splice_Site p.X245_splice 0.07 TCGA-BR-6452-01 X 106185904 106185904 T C MORC4 Silent p.A739A 0.08 TCGA-BR-6452-01 X 106243199 106243199 T - MORC4 Frame_Shift_Del p.M1? 0.08 TCGA-BR-6452-01 X 106486618 106486618 A T PIH1D3 3'UTR 0.11 TCGA-BR-6452-01 X 106803566 106803566 T A FRMPD3 Missense_Mutation p.I314N 0.09 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 X 107288361 107288361 A T VSIG1 Translation_Start_Site p.M1? 0.13 deleterious(0) benign(0.045) TCGA-BR-6452-01 X 107334974 107334974 G A ATG4A 5'UTR 0.12 TCGA-BR-6452-01 X 107395055 107395055 A C ATG4A Missense_Mutation p.K328N 0.07 tolerated(0.26) benign(0.023) TCGA-BR-6452-01 X 107866021 107866021 C A COL4A5 Silent p.G961G 0.09 TCGA-BR-6452-01 X 107935981 107935981 C T COL4A5 Missense_Mutation p.T1511M 0.09 probably_damaging(0.999) TCGA-BR-6452-01 X 107979097 107979097 C T IRS4 Missense_Mutation p.A160T 0.10 deleterious(0.03) probably_damaging(0.983) TCGA-BR-6452-01 X 108924228 108924228 G A ACSL4 Silent p.N259N 0.06 TCGA-BR-6452-01 X 109696605 109696605 T C RGAG1 Silent p.C920C 0.09 TCGA-BR-6452-01 X 109764545 109764545 C T TDGF1P3 RNA 0.13 TCGA-BR-6452-01 X 109937471 109937471 C T CHRDL1 Missense_Mutation p.R233Q 0.22 tolerated(0.3) probably_damaging(0.996) TCGA-BR-6452-01 X 111019870 111019870 A G TRPC5 Missense_Mutation p.Y865H 0.07 deleterious_low_confidence(0) possibly_damaging(0.598) TCGA-BR-6452-01 X 11157336 11157336 C T ARHGAP6 Missense_Mutation p.G858R 0.26 tolerated_low_confidence(0.36) benign(0.001) TCGA-BR-6452-01 X 111914414 111914414 G A LHFPL1 Missense_Mutation p.R69C 0.10 deleterious(0) probably_damaging(0.998) TCGA-BR-6452-01 X 112035138 112035138 T C AMOT Silent p.A616A 0.23 TCGA-BR-6452-01 X 115592931 115592931 A G CT83 Missense_Mutation p.S107P 0.07 deleterious(0.04) probably_damaging(0.986) TCGA-BR-6452-01 X 117742033 117742033 A G DOCK11 Splice_Site p.X894_splice 0.25 TCGA-BR-6452-01 X 118123421 118123421 G T LONRF3 Missense_Mutation p.R370S 0.10 tolerated(0.79) benign(0.001) TCGA-BR-6452-01 X 118586848 118586848 T C SLC25A43 Silent p.I282I 0.09 TCGA-BR-6452-01 X 118708930 118708930 C T UBE2A Silent p.N37N 0.10 TCGA-BR-6452-01 X 118723331 118723331 A G NKRF Missense_Mutation p.M701T 0.08 tolerated(0.37) possibly_damaging(0.798) TCGA-BR-6452-01 X 118797509 118797509 C T SEPT6 Missense_Mutation p.V93M 0.08 deleterious(0) probably_damaging(0.968) TCGA-BR-6452-01 X 118968985 118968985 A T UPF3B Silent p.R436R 0.15 TCGA-BR-6452-01 X 119005722 119005722 T C RNF113A 5'UTR 0.17 TCGA-BR-6452-01 X 120182575 120182575 A C GLUD2 Missense_Mutation p.K346T 0.08 deleterious(0.05) benign(0.131) TCGA-BR-6452-01 X 122757104 122757104 T C THOC2 Silent p.S1178S 0.10 TCGA-BR-6452-01 X 122830676 122830676 G A THOC2 Missense_Mutation p.T121I 0.09 tolerated(0.12) benign(0.065) TCGA-BR-6452-01 X 123631108 123631108 T C TENM1 Missense_Mutation p.I1151M 0.22 deleterious(0) benign(0.002) TCGA-BR-6452-01 X 123680796 123680797 - A TENM1 Frame_Shift_Ins p.Y860Lfs*2 0.18 TCGA-BR-6452-01 X 124028174 124028174 T G TENM1 Missense_Mutation p.D169A 0.08 tolerated_low_confidence(0.77) benign(0.003) TCGA-BR-6452-01 X 125298619 125298619 G A DCAF12L2 Missense_Mutation p.A430V 0.09 deleterious(0) benign(0.082) TCGA-BR-6452-01 X 125299369 125299369 G T DCAF12L2 Missense_Mutation p.P180H 0.17 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 X 125299872 125299872 T G DCAF12L2 Missense_Mutation p.K12N 0.10 tolerated_low_confidence(0.05) benign(0.259) TCGA-BR-6452-01 X 12734369 12734369 A G FRMPD4 Missense_Mutation p.I597M 0.07 deleterious_low_confidence(0.04) benign(0.005) TCGA-BR-6452-01 X 12736059 12736059 A G FRMPD4 Silent p.A1038A 0.08 TCGA-BR-6452-01 X 128877956 128877956 T C XPNPEP2 Missense_Mutation p.V48A 0.21 tolerated(0.2) possibly_damaging(0.507) TCGA-BR-6452-01 X 12903718 12903718 C T TLR7 Missense_Mutation p.P31S 0.11 tolerated(0.38) probably_damaging(1) TCGA-BR-6452-01 X 129041389 129041389 G C UTP14A Missense_Mutation p.D25H 0.18 tolerated(0.09) benign(0.03) TCGA-BR-6452-01 X 12904491 12904491 G A TLR7 Silent p.A288A 0.15 TCGA-BR-6452-01 X 129147516 129147516 G A BCORL1 Silent p.P256P 0.08 TCGA-BR-6452-01 X 129159025 129159025 T C BCORL1 Missense_Mutation p.F1250S 0.06 benign(0.057) TCGA-BR-6452-01 X 129185849 129185849 T G BCORL1 Missense_Mutation p.F1571V 0.06 benign(0.004) TCGA-BR-6452-01 X 129203441 129203441 G - ELF4 Frame_Shift_Del p.Q341Rfs*30 0.10 TCGA-BR-6452-01 X 129339307 129339307 G A ZNF280C Missense_Mutation p.R709C 0.17 deleterious(0) possibly_damaging(0.886) TCGA-BR-6452-01 X 12937960 12937960 C T TLR8 Silent p.C267C 0.07 TCGA-BR-6452-01 X 129804045 129804045 C A ENOX2 Missense_Mutation p.E225D 0.09 deleterious(0.01) probably_damaging(0.99) TCGA-BR-6452-01 X 130215725 130215725 T - ARHGAP36 Frame_Shift_Del p.L31* 0.26 TCGA-BR-6452-01 X 130416641 130416641 T C IGSF1 Silent p.L341L 0.11 TCGA-BR-6452-01 X 131348297 131348297 A T RAP2C Missense_Mutation p.S151T 0.11 tolerated(0.74) benign(0.001) TCGA-BR-6452-01 X 132091164 132091164 G - HS6ST2 Frame_Shift_Del p.R207Afs*13 0.12 TCGA-BR-6452-01 X 132160099 132160099 G A USP26 Missense_Mutation p.T717I 0.11 tolerated(0.14) possibly_damaging(0.647) TCGA-BR-6452-01 X 132161101 132161101 G A USP26 Missense_Mutation p.A383V 0.06 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 X 13337200 13337200 T A ATXN3L Missense_Mutation p.D285V 0.08 deleterious(0.05) benign(0.041) TCGA-BR-6452-01 X 13337424 13337424 T C ATXN3L Silent p.E210E 0.08 TCGA-BR-6452-01 X 134156176 134156176 A G FAM127C Missense_Mutation p.F105S 0.08 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 X 134186058 134186058 A G FAM127B Silent p.I27I 0.06 TCGA-BR-6452-01 X 134426266 134426266 A G ZNF75D Missense_Mutation p.V182A 0.12 tolerated(0.76) benign(0.016) TCGA-BR-6452-01 X 134495028 134495028 A G ZNF449 3'UTR 0.08 TCGA-BR-6452-01 X 134654829 134654829 G A DDX26B 5'UTR 0.25 TCGA-BR-6452-01 X 134680680 134680680 T A DDX26B Silent p.P161P 0.09 TCGA-BR-6452-01 X 134994961 134994961 A - SAGE1 Frame_Shift_Del p.V876Lfs*3 0.17 TCGA-BR-6452-01 X 135047292 135047292 C T MMGT1 Missense_Mutation p.R96H 0.26 deleterious(0.03) probably_damaging(0.984) TCGA-BR-6452-01 X 135405392 135405392 C T GPR112 Missense_Mutation p.R176C 0.11 deleterious(0) benign(0.417) TCGA-BR-6452-01 X 135427956 135427956 C T GPR112 Silent p.S697S 0.17 TCGA-BR-6452-01 X 135429100 135429100 C T GPR112 Missense_Mutation p.P1079S 0.08 tolerated(0.1) benign(0.044) TCGA-BR-6452-01 X 135430773 135430773 A G GPR112 Silent p.A1636A 0.09 TCGA-BR-6452-01 X 135482127 135482127 T A GPR112 Nonsense_Mutation p.C2809* 0.09 TCGA-BR-6452-01 X 135593206 135593206 A T HTATSF1 Silent p.T434T 0.09 TCGA-BR-6452-01 X 13624572 13624572 T C EGFL6 Missense_Mutation p.Y199H 0.11 deleterious(0) probably_damaging(0.998) TCGA-BR-6452-01 X 13645222 13645222 A C EGFL6 Missense_Mutation p.S461R 0.23 tolerated(0.17) benign(0.117) TCGA-BR-6452-01 X 136651095 136651095 T C ZIC3 Silent p.C365C 0.06 TCGA-BR-6452-01 X 138697061 138697061 G A MCF2 Missense_Mutation p.P508S 0.07 deleterious(0.02) benign(0.003) TCGA-BR-6452-01 X 138713569 138713569 C T MCF2 Nonsense_Mutation p.W151* 0.07 TCGA-BR-6452-01 X 138827930 138827932 AAG - ATP11C In_Frame_Del p.F975del 0.25 TCGA-BR-6452-01 X 138840023 138840023 G C ATP11C Missense_Mutation p.L885V 0.13 tolerated(1) possibly_damaging(0.624) TCGA-BR-6452-01 X 138840024 138840024 G T ATP11C Missense_Mutation p.N884K 0.14 deleterious(0) probably_damaging(0.998) TCGA-BR-6452-01 X 139586639 139586639 C T SOX3 Missense_Mutation p.R196H 0.25 deleterious(0) probably_damaging(0.996) TCGA-BR-6452-01 X 140785771 140785771 T A SPANXD Missense_Mutation p.T49S 0.07 tolerated(0.2) probably_damaging(0.989) TCGA-BR-6452-01 X 140969268 140969268 T C MAGEC3 Missense_Mutation p.Y199H 0.08 deleterious(0.01) possibly_damaging(0.727) TCGA-BR-6452-01 X 140995836 140995836 A G MAGEC1 Silent p.S882S 0.16 TCGA-BR-6452-01 X 1428459 1428459 A G CSF2RA 3'UTR 0.13 TCGA-BR-6452-01 X 142967329 142967329 T A UBE2NL Missense_Mutation p.S43T 0.05 tolerated(0.14) benign(0.005) TCGA-BR-6452-01 X 146280611 146280611 A G MIR513B RNA 0.13 TCGA-BR-6452-01 X 146312238 146312238 G A MIR506 RNA 0.07 TCGA-BR-6452-01 X 147027084 147027084 G A FMR1 Missense_Mutation p.R562H 0.12 deleterious_low_confidence(0.02) probably_damaging(0.967) TCGA-BR-6452-01 X 1471268 1471268 G A IL3RA Missense_Mutation p.R162H 0.11 tolerated(1) benign(0.003) TCGA-BR-6452-01 X 148072815 148072815 G A AFF2 Missense_Mutation p.V1297I 0.24 tolerated(0.58) benign(0.2) TCGA-BR-6452-01 X 148797265 148797265 T G MAGEA11 Missense_Mutation p.V65G 0.12 deleterious_low_confidence(0) benign(0.01) TCGA-BR-6452-01 X 149638867 149638867 G T MAMLD1 Missense_Mutation p.R316L 0.14 tolerated(0.09) benign(0.018) TCGA-BR-6452-01 X 149814303 149814303 A G MTM1 Missense_Mutation p.I276V 0.12 tolerated(0.07) probably_damaging(0.992) TCGA-BR-6452-01 X 1505571 1505571 G A SLC25A6 Missense_Mutation p.A274V 0.10 deleterious(0.05) benign(0.305) TCGA-BR-6452-01 X 1508486 1508486 G T SLC25A6 Missense_Mutation p.F82L 0.10 deleterious(0.02) possibly_damaging(0.658) TCGA-BR-6452-01 X 150907014 150907014 C T CNGA2 Missense_Mutation p.A20V 0.07 tolerated_low_confidence(0.43) benign(0) TCGA-BR-6452-01 X 150911846 150911846 T C CNGA2 Missense_Mutation p.C291R 0.06 deleterious(0.01) probably_damaging(1) TCGA-BR-6452-01 X 151303862 151303862 A G MAGEA10 Silent p.D77D 0.06 TCGA-BR-6452-01 X 151366166 151366166 G A GABRA3 Silent p.V290V 0.11 TCGA-BR-6452-01 X 151806638 151806638 C T GABRQ 5'UTR 0.14 TCGA-BR-6452-01 X 151900642 151900642 C A MAGEA12 Silent p.V53V 0.07 TCGA-BR-6452-01 X 151997191 151997191 G T CETN2 Missense_Mutation p.L107M 0.12 tolerated(0.22) benign(0.04) TCGA-BR-6452-01 X 152018925 152018925 T A NSDHL Missense_Mutation p.N75K 0.06 tolerated(0.12) benign(0.219) TCGA-BR-6452-01 X 152128250 152128250 A T ZNF185 Missense_Mutation p.T504S 0.10 tolerated(0.2) benign(0.007) TCGA-BR-6452-01 X 1522303 1522303 G A ASMTL Silent p.N575N 0.14 TCGA-BR-6452-01 X 152482523 152482523 T G MAGEA1 Missense_Mutation p.D163A 0.11 deleterious(0) possibly_damaging(0.835) TCGA-BR-6452-01 X 152821585 152821585 C T ATP2B3 Missense_Mutation p.R713W 0.09 deleterious(0) probably_damaging(0.998) TCGA-BR-6452-01 X 152835151 152835151 A C ATP2B3 Intron 0.08 TCGA-BR-6452-01 X 152991452 152991452 C T ABCD1 Missense_Mutation p.S244L 0.17 tolerated(0.7) benign(0.009) TCGA-BR-6452-01 X 153037095 153037095 G A PLXNB3 Silent p.A857A 0.09 TCGA-BR-6452-01 X 153050278 153050279 - C SRPK3 Frame_Shift_Ins p.A444Gfs*17 0.12 TCGA-BR-6452-01 X 153132191 153132191 C T L1CAM Missense_Mutation p.V782M 0.20 tolerated(0.08) possibly_damaging(0.822) TCGA-BR-6452-01 X 153133891 153133891 C T L1CAM Silent p.G523G 0.19 TCGA-BR-6452-01 X 153171979 153171979 G A AVPR2 Missense_Mutation p.A305T 0.24 tolerated(0.17) benign(0.003) TCGA-BR-6452-01 X 153191672 153191672 G T ARHGAP4 5'UTR 0.31 TCGA-BR-6452-01 X 153209857 153209857 T G RENBP Missense_Mutation p.E14A 0.20 tolerated(0.06) possibly_damaging(0.762) TCGA-BR-6452-01 X 153295906 153295906 C T MECP2 Missense_Mutation p.R470H 0.20 tolerated(0.12) unknown(0) TCGA-BR-6452-01 X 153298000 153298000 T C MECP2 Missense_Mutation p.K24R 0.10 deleterious(0.01) benign(0.186) TCGA-BR-6452-01 X 153533696 153533696 G A TKTL1 Missense_Mutation p.V59M 0.07 deleterious(0) probably_damaging(0.988) TCGA-BR-6452-01 X 153577179 153577179 G A FLNA 3'UTR 0.15 TCGA-BR-6452-01 X 153579955 153579955 G A FLNA Silent p.S2339S 0.30 TCGA-BR-6452-01 X 153626864 153626864 G A RPL10 Missense_Mutation p.G2S 0.08 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 X 153699468 153699468 T C PLXNA3 Missense_Mutation p.V1726A 0.16 deleterious(0) probably_damaging(0.996) TCGA-BR-6452-01 X 153717218 153717218 C T SLC10A3 Missense_Mutation p.G21D 0.27 tolerated_low_confidence(0.1) benign(0.004) TCGA-BR-6452-01 X 153940895 153940895 G A GAB3 Silent p.C226C 0.11 TCGA-BR-6452-01 X 153941521 153941521 A C GAB3 Missense_Mutation p.V186G 0.07 deleterious(0.01) benign(0.185) TCGA-BR-6452-01 X 154003323 154003323 T A DKC1 Intron 0.09 TCGA-BR-6452-01 X 154009926 154009926 C T MPP1 Silent p.V366V 0.08 TCGA-BR-6452-01 X 1540734 1540734 A G ASMTL Silent p.G354G 0.10 TCGA-BR-6452-01 X 154130417 154130417 T C F8 Silent p.L2008L 0.11 TCGA-BR-6452-01 X 154157568 154157568 G T F8 Silent p.L1499L 0.08 TCGA-BR-6452-01 X 154158736 154158736 T G F8 Missense_Mutation p.N1110T 0.10 tolerated(0.07) benign(0.118) TCGA-BR-6452-01 X 154448586 154448586 T C VBP1 Splice_Site p.X73_splice 0.09 TCGA-BR-6452-01 X 154493599 154493600 - C RAB39B 5'UTR 0.11 TCGA-BR-6452-01 X 154741379 154741379 G A TMLHE Missense_Mutation p.A238V 0.19 deleterious(0) possibly_damaging(0.906) TCGA-BR-6452-01 X 1553912 1553912 T C ASMTL Intron 0.14 TCGA-BR-6452-01 X 15560311 15560311 A G BMX Missense_Mutation p.H534R 0.06 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 X 1585104 1585104 A G P2RY8 Silent p.C116C 0.13 TCGA-BR-6452-01 X 16142049 16142049 A G GRPR 5'UTR 0.06 TCGA-BR-6452-01 X 16168543 16168543 G A GRPR Missense_Mutation p.V177M 0.25 deleterious(0.03) probably_damaging(0.986) TCGA-BR-6452-01 X 16846369 16846369 T C TXLNG Silent p.R217R 0.09 TCGA-BR-6452-01 X 16847845 16847845 G - TXLNG Frame_Shift_Del p.E274Rfs*3 0.28 TCGA-BR-6452-01 X 16857989 16857989 C T TXLNG Missense_Mutation p.R400C 0.18 deleterious(0.02) possibly_damaging(0.496) TCGA-BR-6452-01 X 1712482 1712482 G A AKAP17A Missense_Mutation p.G43R 0.11 deleterious(0.04) possibly_damaging(0.593) TCGA-BR-6452-01 X 17156996 17156996 A G REPS2 Missense_Mutation p.K609R 0.19 tolerated(0.14) possibly_damaging(0.638) TCGA-BR-6452-01 X 1748790 1748790 G A ASMT Missense_Mutation p.A174T 0.19 deleterious(0.01) possibly_damaging(0.726) TCGA-BR-6452-01 X 17768146 17768146 C T SCML1 Missense_Mutation p.R146C 0.09 tolerated(0.07) benign(0.002) TCGA-BR-6452-01 X 18213471 18213471 T C BEND2 Silent p.G375G 0.07 TCGA-BR-6452-01 X 18260691 18260691 T C SCML2 Silent p.V614V 0.18 TCGA-BR-6452-01 X 18264789 18264789 A G SCML2 Missense_Mutation p.V577A 0.06 tolerated(0.46) benign(0.003) TCGA-BR-6452-01 X 18323102 18323103 - G SCML2 Frame_Shift_Ins p.G241Rfs*3 0.24 TCGA-BR-6452-01 X 18646626 18646626 C T CDKL5 Missense_Mutation p.P878S 0.09 tolerated_low_confidence(0.06) benign(0) TCGA-BR-6452-01 X 18912463 18912463 C T PHKA2 Silent p.P1132P 0.09 TCGA-BR-6452-01 X 18961916 18961916 T C PHKA2 Missense_Mutation p.E210G 0.06 deleterious(0) probably_damaging(0.983) TCGA-BR-6452-01 X 19413307 19413307 C T MAP3K15 Missense_Mutation p.E696K 0.08 deleterious(0.01) possibly_damaging(0.792) TCGA-BR-6452-01 X 209792 209792 C T PLCXD1 Silent p.L214L 0.16 TCGA-BR-6452-01 X 2161159 2161159 C T DHRSX Missense_Mutation p.V237M 0.19 tolerated(0.06) benign(0.154) TCGA-BR-6452-01 X 21675116 21675116 C T KLHL34 Missense_Mutation p.R264H 0.29 deleterious(0.03) benign(0.416) TCGA-BR-6452-01 X 21675792 21675792 C T KLHL34 Missense_Mutation p.E39K 0.27 deleterious(0.01) possibly_damaging(0.698) TCGA-BR-6452-01 X 21863457 21863457 T A MBTPS2 Silent p.S131S 0.08 TCGA-BR-6452-01 X 21985316 21985316 G A SMS Missense_Mutation p.D18N 0.13 tolerated(0.12) benign(0.13) TCGA-BR-6452-01 X 22012435 22012435 T C SMS Missense_Mutation p.V356A 0.08 deleterious(0) probably_damaging(0.991) TCGA-BR-6452-01 X 22056561 22056561 C G PHEX Intron 0.17 TCGA-BR-6452-01 X 22291585 22291585 G A ZNF645 Silent p.P159P 0.26 TCGA-BR-6452-01 X 23018527 23018527 G A DDX53 Missense_Mutation p.S118N 0.09 tolerated(0.8) benign(0.001) TCGA-BR-6452-01 X 24006408 24006408 T G KLHL15 Missense_Mutation p.K482T 0.15 tolerated(0.25) possibly_damaging(0.82) TCGA-BR-6452-01 X 2408217 2408217 C T ZBED1 Missense_Mutation p.E182K 0.08 tolerated(0.6) benign(0.076) TCGA-BR-6452-01 X 2408366 2408366 C T ZBED1 Missense_Mutation p.G132D 0.10 tolerated(0.19) benign(0.008) TCGA-BR-6452-01 X 27840426 27840426 C T MAGEB10 Missense_Mutation p.R335C 0.10 tolerated(0.2) unknown(0) TCGA-BR-6452-01 X 2856150 2856150 C T ARSE Silent p.E425E 0.09 TCGA-BR-6452-01 X 2861128 2861128 A T ARSE Silent p.G368G 0.08 TCGA-BR-6452-01 X 3019162 3019162 A - ARSF Frame_Shift_Del p.R335Gfs*62 0.15 TCGA-BR-6452-01 X 302119 302119 C G PPP2R3B Silent p.V366V 0.07 TCGA-BR-6452-01 X 30327194 30327194 G A NR0B1 Missense_Mutation p.A96V 0.16 deleterious_low_confidence(0) possibly_damaging(0.664) TCGA-BR-6452-01 X 306303 306303 C T PPP2R3B Silent p.T328T 0.24 TCGA-BR-6452-01 X 30686200 30686200 T C GK Missense_Mutation p.L75P 0.22 deleterious(0) probably_damaging(0.978) TCGA-BR-6452-01 X 30849565 30849565 G A TAB3 Silent p.C706C 0.09 TCGA-BR-6452-01 X 31165402 31165402 A G DMD Missense_Mutation p.L3596P 0.22 possibly_damaging(0.883) TCGA-BR-6452-01 X 31196845 31196845 C T DMD Silent p.K3388K 0.06 TCGA-BR-6452-01 X 3229042 3229042 C T MXRA5 Missense_Mutation p.G2401D 0.12 deleterious(0) probably_damaging(0.999) TCGA-BR-6452-01 X 32398784 32398784 T A DMD Missense_Mutation p.K1563M 0.10 probably_damaging(0.977) TCGA-BR-6452-01 X 3239946 3239946 A T MXRA5 Silent p.S1260S 0.22 TCGA-BR-6452-01 X 3240584 3240584 G T MXRA5 Missense_Mutation p.L1048I 0.11 tolerated(0.18) benign(0.051) TCGA-BR-6452-01 X 32408234 32408234 C A DMD Missense_Mutation p.G1433V 0.14 possibly_damaging(0.855) TCGA-BR-6452-01 X 32408235 32408235 C A DMD Missense_Mutation p.G1433W 0.14 probably_damaging(0.963) TCGA-BR-6452-01 X 34148408 34148408 T G FAM47A Missense_Mutation p.K663T 0.10 tolerated(0.25) probably_damaging(0.969) TCGA-BR-6452-01 X 34962797 34962797 A G FAM47B Missense_Mutation p.T617A 0.07 tolerated(0.06) possibly_damaging(0.741) TCGA-BR-6452-01 X 35944204 35944204 A T CXorf22 Missense_Mutation p.Y107F 0.11 tolerated(0.05) possibly_damaging(0.515) TCGA-BR-6452-01 X 35966531 35966531 C A CXorf22 Missense_Mutation p.F206L 0.14 tolerated(0.34) benign(0.021) TCGA-BR-6452-01 X 37431373 37431373 C T LANCL3 Missense_Mutation p.L84F 0.14 tolerated(0.34) possibly_damaging(0.878) TCGA-BR-6452-01 X 37639305 37639305 A G CYBB 5'UTR 0.10 TCGA-BR-6452-01 X 37658288 37658288 G A CYBB Missense_Mutation p.G252E 0.11 tolerated(0.28) benign(0.411) TCGA-BR-6452-01 X 37850184 37850184 T C CXorf27 Missense_Mutation p.F31S 0.13 tolerated(0.26) possibly_damaging(0.592) TCGA-BR-6452-01 X 38240679 38240679 C T OTC Missense_Mutation p.A128V 0.11 deleterious(0) benign(0.279) TCGA-BR-6452-01 X 40448348 40448348 A G ATP6AP2 Missense_Mutation p.M50V 0.19 deleterious(0.03) benign(0.206) TCGA-BR-6452-01 X 40456806 40456806 T C ATP6AP2 Missense_Mutation p.S142P 0.08 deleterious(0.04) possibly_damaging(0.623) TCGA-BR-6452-01 X 41205775 41205775 G A DDX3X Silent p.L505L 0.12 TCGA-BR-6452-01 X 41586602 41586602 T C GPR82 Missense_Mutation p.L108S 0.10 deleterious(0.01) benign(0.185) TCGA-BR-6452-01 X 44928862 44928862 T C KDM6A Silent p.P654P 0.09 TCGA-BR-6452-01 X 45606494 45606494 T C MIR222 RNA 0.14 TCGA-BR-6452-01 X 46322301 46322301 T C KRBOX4 Missense_Mutation p.V45A 0.10 deleterious(0.01) probably_damaging(0.942) TCGA-BR-6452-01 X 47230065 47230065 A G ZNF157 5'UTR 0.20 TCGA-BR-6452-01 X 47272743 47272743 G A ZNF157 Missense_Mutation p.S424N 0.22 deleterious(0.04) benign(0.36) TCGA-BR-6452-01 X 47426532 47426532 T C ARAF Splice_Site p.X291_splice 0.09 TCGA-BR-6452-01 X 47478771 47478771 G A SYN1 Silent p.I119I 0.19 TCGA-BR-6452-01 X 48340054 48340054 C T FTSJ1 Silent p.P202P 0.21 TCGA-BR-6452-01 X 48371053 48371053 G A PORCN Missense_Mutation p.G211D 0.42 deleterious(0) benign(0.315) TCGA-BR-6452-01 X 48418075 48418075 G A TBC1D25 Missense_Mutation p.R260H 0.26 deleterious(0.02) benign(0.03) TCGA-BR-6452-01 X 48458825 48458825 G A WDR13 Silent p.R214R 0.14 TCGA-BR-6452-01 X 48826003 48826003 G A KCND1 Missense_Mutation p.R226C 0.24 deleterious(0) possibly_damaging(0.772) TCGA-BR-6452-01 X 48837853 48837853 A G GRIPAP1 Missense_Mutation p.I602T 0.21 probably_damaging(0.987) TCGA-BR-6452-01 X 48972254 48972254 G A GPKOW Silent p.Y377Y 0.27 TCGA-BR-6452-01 X 49020922 49020922 T C MAGIX Intron 0.09 TCGA-BR-6452-01 X 49021153 49021153 G A MAGIX Intron 0.15 TCGA-BR-6452-01 X 49127054 49127054 A G PPP1R3F Missense_Mutation p.D241G 0.11 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 X 49161405 49161405 A T GAGE10 Missense_Mutation p.I23F 0.07 tolerated(0.09) possibly_damaging(0.751) TCGA-BR-6452-01 X 49179707 49179707 C T GAGE12J Missense_Mutation p.P12L 0.07 deleterious(0.01) benign(0.166) TCGA-BR-6452-01 X 49958224 49958224 G A AKAP4 Silent p.S380S 0.19 TCGA-BR-6452-01 X 50055623 50055624 AG - CCNB3 Frame_Shift_Del p.E1141Gfs*14 0.12 TCGA-BR-6452-01 X 50213510 50213510 C T DGKK RNA 0.13 TCGA-BR-6452-01 X 51075982 51075982 G A NUDT10 Silent p.E55E 0.10 TCGA-BR-6452-01 X 51150515 51150515 G A CXorf67 Missense_Mutation p.R216H 0.35 tolerated(0.59) benign(0.228) TCGA-BR-6452-01 X 51150736 51150736 C T CXorf67 Missense_Mutation p.R290C 0.29 tolerated(0.06) benign(0.129) TCGA-BR-6452-01 X 51639598 51639598 A G MAGED1 Missense_Mutation p.T339A 0.20 deleterious_low_confidence(0) unknown(0) TCGA-BR-6452-01 X 53244983 53244983 G A KDM5C Silent p.A319A 0.12 TCGA-BR-6452-01 X 53268436 53268436 T C IQSEC2 Missense_Mutation p.Y1019C 0.07 deleterious(0) probably_damaging(0.995) TCGA-BR-6452-01 X 53279871 53279871 A G IQSEC2 Silent p.H629H 0.16 TCGA-BR-6452-01 X 53440054 53440054 A T SMC1A Missense_Mutation p.V217E 0.11 tolerated(0.91) benign(0.01) TCGA-BR-6452-01 X 53607904 53607904 T C HUWE1 Missense_Mutation p.N1868S 0.14 possibly_damaging(0.621) TCGA-BR-6452-01 X 54019239 54019239 C T PHF8 Missense_Mutation p.D590N 0.12 tolerated(0.41) benign(0.15) TCGA-BR-6452-01 X 54037577 54037577 T C PHF8 Silent p.G344G 0.13 TCGA-BR-6452-01 X 54467179 54467179 G - TSR2 Frame_Shift_Del p.G48Vfs*15 0.16 TCGA-BR-6452-01 X 54955368 54955368 T C TRO Silent p.A737A 0.13 TCGA-BR-6452-01 X 54989787 54989787 G - PFKFB1 Frame_Shift_Del p.T43Qfs*3 0.19 TCGA-BR-6452-01 X 56276693 56276693 G A KLF8 Missense_Mutation p.V13I 0.06 tolerated_low_confidence(0.15) benign(0.006) TCGA-BR-6452-01 X 57367813 57367813 G A FAAH2 Silent p.K244K 0.09 TCGA-BR-6452-01 X 57935777 57935777 A T ZXDA Missense_Mutation p.F360I 0.20 tolerated(0.09) probably_damaging(0.997) TCGA-BR-6452-01 X 5827247 5827247 C T NLGN4X Missense_Mutation p.G220D 0.09 deleterious(0) probably_damaging(1) TCGA-BR-6452-01 X 62893983 62893983 G A ARHGEF9 Missense_Mutation p.R287C 0.20 deleterious(0) probably_damaging(0.989) TCGA-BR-6452-01 X 63445207 63445207 C T ASB12 Silent p.T108T 0.30 TCGA-BR-6452-01 X 63445479 63445479 T C ASB12 Missense_Mutation p.I18V 0.23 tolerated(0.16) possibly_damaging(0.891) TCGA-BR-6452-01 X 64722378 64722378 C T ZC3H12B Silent p.N600N 0.11 TCGA-BR-6452-01 X 64951829 64951829 C A MSN Silent p.I227I 0.10 TCGA-BR-6452-01 X 64957057 64957057 C T MSN Missense_Mutation p.R370C 0.28 deleterious(0) possibly_damaging(0.901) TCGA-BR-6452-01 X 66941757 66941758 - C AR Frame_Shift_Ins p.Q803Pfs*27 0.09 TCGA-BR-6452-01 X 67738621 67738621 G - YIPF6 Frame_Shift_Del p.G93Afs*3 0.10 TCGA-BR-6452-01 X 67751834 67751834 C A YIPF6 Missense_Mutation p.P235H 0.11 deleterious_low_confidence(0.04) benign(0.085) TCGA-BR-6452-01 X 67941915 67941915 G A STARD8 Missense_Mutation p.G829D 0.16 deleterious(0) possibly_damaging(0.847) TCGA-BR-6452-01 X 68060180 68060180 G A EFNB1 Missense_Mutation p.A242T 0.08 tolerated(0.07) possibly_damaging(0.484) TCGA-BR-6452-01 X 68381999 68381999 G T PJA1 Nonsense_Mutation p.C361* 0.08 TCGA-BR-6452-01 X 68836237 68836237 G A EDA Missense_Mutation p.G29R 0.19 deleterious_low_confidence(0.03) unknown(0) TCGA-BR-6452-01 X 69639532 69639532 C T KIF4A Missense_Mutation p.R1132W 0.12 tolerated(0.08) benign(0) TCGA-BR-6452-01 X 69639929 69639929 C T KIF4A Silent p.C1171C 0.23 TCGA-BR-6452-01 X 69647035 69647035 G A GDPD2 Missense_Mutation p.G251R 0.12 deleterious(0) probably_damaging(0.995) TCGA-BR-6452-01 X 69649741 69649741 A G GDPD2 Intron 0.14 TCGA-BR-6452-01 X 69652204 69652204 A G GDPD2 Missense_Mutation p.K503R 0.07 tolerated(0.15) possibly_damaging(0.546) TCGA-BR-6452-01 X 70148105 70148105 A G SLC7A3 Missense_Mutation p.L237S 0.17 tolerated(0.07) possibly_damaging(0.469) TCGA-BR-6452-01 X 70326212 70326212 A G CXorf65 Silent p.S30S 0.20 TCGA-BR-6452-01 X 70327621 70327621 C G IL2RG Missense_Mutation p.A359P 0.17 tolerated_low_confidence(0.29) benign(0.009) TCGA-BR-6452-01 X 70389593 70389593 C G NLGN3 Nonsense_Mutation p.Y731* 0.26 TCGA-BR-6452-01 X 70823666 70823666 A G ACRC Missense_Mutation p.D180G 0.10 unknown(0) TCGA-BR-6452-01 X 70836470 70836470 G A CXCR3 Silent p.G331G 0.12 TCGA-BR-6452-01 X 71349878 71349878 T C RGAG4 Missense_Mutation p.R505G 0.09 deleterious_low_confidence(0) unknown(0) TCGA-BR-6452-01 X 71350381 71350381 T C RGAG4 Missense_Mutation p.E337G 0.11 tolerated(0.27) benign(0.002) TCGA-BR-6452-01 X 71416695 71416695 T A PIN4 Missense_Mutation p.S85T 0.09 deleterious(0.03) benign(0.135) TCGA-BR-6452-01 X 71787753 71787753 C T HDAC8 Nonsense_Mutation p.W141* 0.08 TCGA-BR-6452-01 X 72433875 72433875 G A NAP1L2 Missense_Mutation p.R152C 0.21 tolerated(0.08) benign(0.039) TCGA-BR-6452-01 X 73040844 73040844 T C XIST RNA 0.14 TCGA-BR-6452-01 X 73042647 73042647 A G XIST RNA 0.08 TCGA-BR-6452-01 X 73044507 73044507 T C XIST RNA 0.16 TCGA-BR-6452-01 X 73044614 73044614 T A XIST RNA 0.10 TCGA-BR-6452-01 X 73065194 73065194 A G XIST RNA 0.09 TCGA-BR-6452-01 X 73812655 73812655 T C RLIM Silent p.G165G 0.13 TCGA-BR-6452-01 X 73963610 73963610 A T KIAA2022 Missense_Mutation p.F261Y 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-BR-6452-01 X 73964288 73964288 A G KIAA2022 Missense_Mutation p.M35T 0.12 tolerated_low_confidence(0.16) benign(0.029) TCGA-BR-6452-01 X 74289248 74289248 T C ABCB7 Silent p.T470T 0.22 TCGA-BR-6452-01 X 74523346 74523346 A T UPRT Nonstop_Mutation p.*310Yext*3 0.10 TCGA-BR-6452-01 X 75395397 75395397 T C PBDC1 Silent p.L82L 0.11 TCGA-BR-6452-01 X 75648280 75648280 C A MAGEE1 5'UTR 0.13 TCGA-BR-6452-01 X 75648289 75648289 T C MAGEE1 5'UTR 0.13 TCGA-BR-6452-01 X 75650756 75650756 C A MAGEE1 Silent p.S811S 0.08 TCGA-BR-6452-01 X 76939626 76939627 - A ATRX Frame_Shift_Ins p.L374Ffs*7 0.15 TCGA-BR-6452-01 X 77224638 77224638 G A PGAM4 Silent p.F166F 0.08 TCGA-BR-6452-01 X 77227165 77227165 T C ATP7A Silent p.S9S 0.09 TCGA-BR-6452-01 X 77254041 77254041 A T ATP7A Missense_Mutation p.N468I 0.19 tolerated(0.18) benign(0.035) TCGA-BR-6452-01 X 77369604 77369604 C A PGK1 Missense_Mutation p.L122I 0.10 deleterious(0.01) probably_damaging(0.939) TCGA-BR-6452-01 X 77393267 77393267 C T TAF9B Silent p.R128R 0.16 TCGA-BR-6452-01 X 77528568 77528568 A G CYSLTR1 Missense_Mutation p.S226P 0.11 tolerated(0.3) benign(0.005) TCGA-BR-6452-01 X 77528587 77528587 T - CYSLTR1 Frame_Shift_Del p.K219Nfs*3 0.10 TCGA-BR-6452-01 X 79948491 79948491 G A BRWD3 Nonsense_Mutation p.Q1071* 0.26 TCGA-BR-6452-01 X 83352817 83352817 A G RPS6KA6 Missense_Mutation p.W606R 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-BR-6452-01 X 84502578 84502578 T C ZNF711 5'UTR 0.09 TCGA-BR-6452-01 X 84537187 84537187 A - POF1B Intron 0.14 TCGA-BR-6452-01 X 86069719 86069720 - A DACH2 Frame_Shift_Ins p.T525Nfs*12 0.13 TCGA-BR-6452-01 X 92928184 92928184 G A NAP1L3 Silent p.S40S 0.11 TCGA-BR-6452-01 X 99551236 99551236 A G PCDH19 3'UTR 0.08 TCGA-BR-6452-01 X 99551344 99551344 G A PCDH19 Silent p.S1126S 0.07 TCGA-BR-6452-01 X 99942073 99942073 C T SYTL4 Missense_Mutation p.R392H 0.11 tolerated(0.05) benign(0.008) TCGA-BR-6453-01 10 100150465 100150465 G A PYROXD2 Silent p.P394P 0.11 TCGA-BR-6453-01 10 17195406 17195406 T G TRDMT1 Intron 0.42 TCGA-BR-6453-01 10 20465939 20465939 A C PLXDC2 Silent p.R299R 0.10 TCGA-BR-6453-01 10 25701388 25701388 T G GPR158 Missense_Mutation p.F441V 0.17 deleterious(0.01) possibly_damaging(0.867) TCGA-BR-6453-01 10 25886999 25886999 A C GPR158 Missense_Mutation p.K815T 0.14 deleterious(0.04) benign(0.334) TCGA-BR-6453-01 10 28250600 28250600 G A ARMC4 Missense_Mutation p.S428L 0.12 deleterious(0) possibly_damaging(0.721) TCGA-BR-6453-01 10 50369595 50369595 G C C10orf128 Intron 0.11 TCGA-BR-6453-01 10 73544140 73544140 G A CDH23 Missense_Mutation p.C1827Y 0.11 tolerated(0.08) probably_damaging(0.919) TCGA-BR-6453-01 10 77158820 77158820 G A ZNF503 Missense_Mutation p.T543M 0.09 deleterious(0) probably_damaging(0.978) TCGA-BR-6453-01 11 103058272 103058272 T G DYNC2H1 Missense_Mutation p.L2366R 0.21 benign(0.018) TCGA-BR-6453-01 11 107832831 107832831 T C RAB39A Silent p.C129C 0.14 TCGA-BR-6453-01 11 122775942 122775942 T G C11orf63 Intron 0.17 TCGA-BR-6453-01 11 25071622 25071622 A C LUZP2 Missense_Mutation p.Q268H 0.11 tolerated(0.33) benign(0.264) TCGA-BR-6453-01 11 31349807 31349807 T C DCDC1 Silent p.E7E 0.19 TCGA-BR-6453-01 11 43352073 43352073 G A API5 Missense_Mutation p.V413I 0.08 tolerated(0.27) benign(0.252) TCGA-BR-6453-01 11 4928970 4928970 T G OR51A7 Missense_Mutation p.L124R 0.25 deleterious(0.01) benign(0.072) TCGA-BR-6453-01 11 51412117 51412117 T G OR4A5 Missense_Mutation p.Q93H 0.17 tolerated_low_confidence(0.1) benign(0.308) TCGA-BR-6453-01 11 55657447 55657447 A T TRIM51 Missense_Mutation p.E264V 0.11 deleterious(0.03) benign(0.064) TCGA-BR-6453-01 11 55681965 55681965 A C OR5W2 Missense_Mutation p.L32V 0.14 deleterious(0) benign(0.213) TCGA-BR-6453-01 11 5878173 5878173 A C OR52E8 Missense_Mutation p.L254V 0.09 deleterious(0.02) benign(0.247) TCGA-BR-6453-01 11 6023384 6023384 T G OR56A4 Missense_Mutation p.N332T 0.15 deleterious(0.02) possibly_damaging(0.888) TCGA-BR-6453-01 11 92533859 92533859 G T FAT3 Silent p.R2560R 0.25 TCGA-BR-6453-01 12 10007076 10007076 A G CLEC2B Missense_Mutation p.L82P 0.11 deleterious(0) probably_damaging(0.999) TCGA-BR-6453-01 12 21919280 21919280 T G KCNJ8 Missense_Mutation p.S218R 0.13 deleterious(0) probably_damaging(0.996) TCGA-BR-6453-01 12 22218129 22218129 G T CMAS Missense_Mutation p.A397S 0.13 tolerated(0.05) benign(0.357) TCGA-BR-6453-01 12 29449959 29449959 C T FAR2 Missense_Mutation p.A124V 0.13 deleterious(0) probably_damaging(0.999) TCGA-BR-6453-01 12 39705250 39705250 A G KIF21A Silent p.S1355S 0.16 TCGA-BR-6453-01 12 55356738 55356738 A C TESPA1 Missense_Mutation p.V315G 0.10 deleterious(0) possibly_damaging(0.878) TCGA-BR-6453-01 12 6702658 6702658 C T CHD4 Missense_Mutation p.R813H 0.10 deleterious(0.01) probably_damaging(0.954) TCGA-BR-6453-01 12 6883914 6883914 C T LAG3 Missense_Mutation p.A222V 0.10 tolerated(0.28) benign(0.027) TCGA-BR-6453-01 12 97045576 97045576 A C C12orf55 Missense_Mutation p.N1695H 0.14 deleterious(0.04) possibly_damaging(0.851) TCGA-BR-6453-01 13 101710377 101710377 G A NALCN Missense_Mutation p.T1646M 0.06 deleterious(0.03) possibly_damaging(0.661) TCGA-BR-6453-01 13 36141109 36141109 A C NBEA Missense_Mutation p.E2330D 0.10 tolerated(0.11) benign(0.008) TCGA-BR-6453-01 13 37012812 37012812 A C CCNA1 Missense_Mutation p.K234T 0.09 deleterious(0.01) benign(0.369) TCGA-BR-6453-01 13 37453530 37453530 C T SMAD9 Silent p.P99P 0.10 TCGA-BR-6453-01 13 38229268 38229268 T G TRPC4 Missense_Mutation p.N614T 0.14 deleterious(0) probably_damaging(0.987) TCGA-BR-6453-01 13 46554086 46554086 A C ZC3H13 Missense_Mutation p.Y592D 0.07 probably_damaging(0.998) TCGA-BR-6453-01 13 46946186 46946186 G A KIAA0226L Missense_Mutation p.S142F 0.10 deleterious(0.04) benign(0.035) TCGA-BR-6453-01 13 48835306 48835306 C T ITM2B Silent p.F249F 0.06 TCGA-BR-6453-01 13 66878772 66878772 C A PCDH9 3'UTR 0.08 TCGA-BR-6453-01 13 66878826 66878826 T C PCDH9 Silent p.A1225A 0.05 TCGA-BR-6453-01 13 86368894 86368894 C T SLITRK6 Missense_Mutation p.V584I 0.12 tolerated(0.35) benign(0.004) TCGA-BR-6453-01 13 93879749 93879749 G C GPC6 Missense_Mutation p.G14R 0.04 deleterious(0.03) probably_damaging(0.988) TCGA-BR-6453-01 14 103946722 103946722 A T MARK3 Splice_Site p.X495_splice 0.03 TCGA-BR-6453-01 14 23874326 23874326 G A MYH6 Silent p.N171N 0.08 TCGA-BR-6453-01 14 26918125 26918125 C T NOVA1 Silent p.G188G 0.11 TCGA-BR-6453-01 14 47566109 47566109 G T MDGA2 Silent p.A381A 0.13 TCGA-BR-6453-01 15 25220656 25220656 A C SNRPN Missense_Mutation p.K52T 0.13 deleterious(0.01) probably_damaging(0.986) TCGA-BR-6453-01 15 27128556 27128556 C T GABRA5 Missense_Mutation p.R117C 0.13 deleterious(0.01) probably_damaging(0.959) TCGA-BR-6453-01 15 33905387 33905387 G A RYR3 Missense_Mutation p.R723Q 0.20 probably_damaging(0.953) TCGA-BR-6453-01 15 40866003 40866003 G A RPUSD2 Nonsense_Mutation p.W394* 0.15 TCGA-BR-6453-01 15 49325260 49325260 G A SECISBP2L Missense_Mutation p.P189L 0.12 deleterious(0.02) benign(0.181) TCGA-BR-6453-01 15 50189507 50189507 G A ATP8B4 Silent p.F893F 0.12 TCGA-BR-6453-01 15 79356827 79356827 G T RASGRF1 Silent p.A106A 0.11 TCGA-BR-6453-01 16 27460390 27460390 G A IL21R Missense_Mutation p.R468Q 0.12 tolerated(0.32) possibly_damaging(0.554) TCGA-BR-6453-01 16 30727524 30727524 G A SRCAP Splice_Site p.X877_splice 0.13 TCGA-BR-6453-01 16 31131665 31131665 C T KAT8 Missense_Mutation p.R98W 0.12 deleterious(0) probably_damaging(1) TCGA-BR-6453-01 16 33647269 33647269 C T RP11-812E19.9 Missense_Mutation p.A111T 0.09 deleterious_low_confidence(0) benign(0.44) TCGA-BR-6453-01 16 56703730 56703730 C T MT1H 5'UTR 0.32 TCGA-BR-6453-01 16 69922098 69922098 C T WWP2 Missense_Mutation p.S287L 0.21 tolerated(0.07) benign(0.038) TCGA-BR-6453-01 16 9857275 9857275 G A GRIN2A Missense_Mutation p.R1376C 0.14 tolerated(0.05) probably_damaging(0.94) TCGA-BR-6453-01 17 15211982 15211982 G A TEKT3 Missense_Mutation p.R419C 0.10 tolerated(0.07) benign(0.077) TCGA-BR-6453-01 17 33495277 33495277 C T UNC45B Missense_Mutation p.T450M 0.15 deleterious(0.01) probably_damaging(0.909) TCGA-BR-6453-01 17 3631275 3631275 A T ITGAE Missense_Mutation p.C1008S 0.05 tolerated(0.31) probably_damaging(1) TCGA-BR-6453-01 17 38990822 38990822 T C TMEM99 Silent p.C18C 0.14 TCGA-BR-6453-01 17 51901928 51901928 T G KIF2B Missense_Mutation p.S512A 0.12 tolerated(0.06) benign(0.309) TCGA-BR-6453-01 17 56448390 56448390 T C RNF43 Missense_Mutation p.H86R 0.07 deleterious(0) probably_damaging(0.999) TCGA-BR-6453-01 17 64059183 64059183 A C CEP112 Silent p.R324R 0.10 TCGA-BR-6453-01 17 67300886 67300886 G A ABCA5 Missense_Mutation p.A285V 0.23 tolerated(0.29) probably_damaging(0.99) TCGA-BR-6453-01 17 73727404 73727404 C T ITGB4 Silent p.F390F 0.09 TCGA-BR-6453-01 17 74396572 74396572 C T UBE2O Silent p.T318T 0.07 TCGA-BR-6453-01 17 78282836 78282836 G T RNF213 Missense_Mutation p.L840F 0.14 benign(0.034) TCGA-BR-6453-01 18 31319840 31319840 G A ASXL3 Silent p.P824P 0.15 TCGA-BR-6453-01 18 333120 333120 A C COLEC12 Missense_Mutation p.F614V 0.19 deleterious(0.01) unknown(0) TCGA-BR-6453-01 18 40323518 40323518 T G RIT2 Missense_Mutation p.K198N 0.12 deleterious(0) benign(0.403) TCGA-BR-6453-01 18 7050779 7050779 T C LAMA1 Missense_Mutation p.R168G 0.12 deleterious(0) possibly_damaging(0.9) TCGA-BR-6453-01 18 7231390 7231390 T G LRRC30 Missense_Mutation p.V85G 0.16 tolerated(0.32) benign(0.243) TCGA-BR-6453-01 19 17091456 17091456 G A CPAMD8 Missense_Mutation p.P526L 0.09 deleterious(0) probably_damaging(0.947) TCGA-BR-6453-01 19 19655627 19655627 T C CILP2 Missense_Mutation p.V758A 0.26 tolerated(0.16) benign(0.059) TCGA-BR-6453-01 19 20308606 20308606 T C ZNF486 Missense_Mutation p.S363P 0.18 deleterious(0.04) probably_damaging(0.969) TCGA-BR-6453-01 19 21992583 21992583 A C ZNF43 Missense_Mutation p.F86V 0.07 tolerated(0.07) benign(0.008) TCGA-BR-6453-01 19 22272248 22272248 A C ZNF257 3'UTR 0.17 TCGA-BR-6453-01 19 22941726 22941726 T C ZNF99 Missense_Mutation p.R329G 0.09 deleterious(0.04) possibly_damaging(0.539) TCGA-BR-6453-01 19 41263238 41263238 G C SNRPA Missense_Mutation p.E25D 0.12 deleterious(0.01) benign(0.056) TCGA-BR-6453-01 19 42301736 42301736 G A CEACAM3 Missense_Mutation p.A94T 0.14 deleterious(0.03) possibly_damaging(0.906) TCGA-BR-6453-01 19 43406486 43406486 A G PSG6 3'Flank 0.11 TCGA-BR-6453-01 19 43680148 43680148 G A PSG5 Nonsense_Mutation p.R195* 0.08 TCGA-BR-6453-01 19 52272262 52272262 T G FPR2 Silent p.G117G 0.12 TCGA-BR-6453-01 19 52394692 52394692 G A ZNF649 Missense_Mutation p.P233S 0.14 tolerated(0.27) benign(0.021) TCGA-BR-6453-01 19 55450806 55450806 T G NLRP7 Missense_Mutation p.K461Q 0.11 tolerated(0.14) benign(0.053) TCGA-BR-6453-01 19 9086015 9086015 A C MUC16 Missense_Mutation p.L1934V 0.10 unknown(0) TCGA-BR-6453-01 1 103345385 103345385 A C COL11A1 Missense_Mutation p.F1710V 0.11 unknown(0) TCGA-BR-6453-01 1 109794410 109794410 G A CELSR2 Missense_Mutation p.R570Q 0.12 deleterious(0) probably_damaging(0.998) TCGA-BR-6453-01 1 158324361 158324361 T G CD1E Missense_Mutation p.F85V 0.09 deleterious(0) possibly_damaging(0.471) TCGA-BR-6453-01 1 158576489 158576489 G A OR10Z1 Silent p.G87G 0.10 TCGA-BR-6453-01 1 16377482 16377482 G A CLCNKB Nonsense_Mutation p.W389* 0.09 TCGA-BR-6453-01 1 16464906 16464906 A T EPHA2 Missense_Mutation p.F281L 0.14 deleterious(0.02) possibly_damaging(0.622) TCGA-BR-6453-01 1 198711490 198711490 A T PTPRC Missense_Mutation p.Q897H 0.10 deleterious(0) probably_damaging(1) TCGA-BR-6453-01 1 203311556 203311556 C T FMOD Missense_Mutation p.R349H 0.15 deleterious(0) probably_damaging(0.999) TCGA-BR-6453-01 1 220345380 220345380 C T RAB3GAP2 Missense_Mutation p.E810K 0.25 deleterious(0.03) benign(0.197) TCGA-BR-6453-01 1 236399099 236399099 C T ERO1LB Silent p.A221A 0.13 TCGA-BR-6453-01 1 240256759 240256759 C A FMN2 Silent p.S450S 0.11 TCGA-BR-6453-01 1 240555824 240555824 A G FMN2 Silent p.Q1624Q 0.11 TCGA-BR-6453-01 1 25124240 25124240 G A CLIC4 Missense_Mutation p.S27N 0.08 tolerated(0.16) benign(0.001) TCGA-BR-6453-01 1 32265646 32265646 C T SPOCD1 Missense_Mutation p.D567N 0.17 tolerated(0.21) benign(0.011) TCGA-BR-6453-01 1 47609043 47609043 C T CYP4A22 Nonsense_Mutation p.Q205* 0.17 TCGA-BR-6453-01 1 74507160 74507160 T G LRRIQ3 Missense_Mutation p.Q485H 0.12 tolerated(0.05) benign(0.048) TCGA-BR-6453-01 1 79392711 79392711 A C ELTD1 Missense_Mutation p.F315V 0.10 tolerated(0.52) benign(0.003) TCGA-BR-6453-01 1 79403793 79403793 T A ELTD1 Missense_Mutation p.T190S 0.12 tolerated(0.42) benign(0.088) TCGA-BR-6453-01 1 87108241 87108241 T C RP4-651E10.4 Intron 0.14 TCGA-BR-6453-01 1 91851178 91851178 G T HFM1 Missense_Mutation p.F236L 0.17 tolerated_low_confidence(1) benign(0.001) TCGA-BR-6453-01 20 37356678 37356678 C T SLC32A1 Missense_Mutation p.S325L 0.24 deleterious(0) possibly_damaging(0.876) TCGA-BR-6453-01 20 40709397 40709397 T G PTPRT 3'UTR 0.18 TCGA-BR-6453-01 22 26100174 26100174 C T ADRBK2 Silent p.G442G 0.07 TCGA-BR-6453-01 22 30136716 30136716 T G ZMAT5 Missense_Mutation p.Q65P 0.14 tolerated(0.06) benign(0.111) TCGA-BR-6453-01 22 37482353 37482353 C T TMPRSS6 Missense_Mutation p.V324M 0.10 tolerated(0.18) benign(0.012) TCGA-BR-6453-01 22 40055734 40055734 C T CACNA1I Silent p.L827L 0.09 TCGA-BR-6453-01 22 43831011 43831011 C T MPPED1 Silent p.C94C 0.13 TCGA-BR-6453-01 2 10912687 10912687 C G ATP6V1C2 Missense_Mutation p.Q197E 0.07 tolerated(0.91) benign(0.002) TCGA-BR-6453-01 2 120385314 120385314 G T PCDP1 Silent p.L534L 0.11 TCGA-BR-6453-01 2 141201953 141201953 A G LRP1B Silent p.L3414L 0.17 TCGA-BR-6453-01 2 141250226 141250226 T C LRP1B Missense_Mutation p.E3024G 0.08 benign(0.403) TCGA-BR-6453-01 2 148653912 148653912 T G ACVR2A Missense_Mutation p.F33C 0.05 deleterious(0.02) possibly_damaging(0.634) TCGA-BR-6453-01 2 166893015 166893015 A C SCN1A Missense_Mutation p.L991R 0.10 deleterious(0) probably_damaging(1) TCGA-BR-6453-01 2 179437107 179437107 T C TTN Silent p.Q24584Q 0.07 TCGA-BR-6453-01 2 179472135 179472135 T G TTN Missense_Mutation p.E17760D 0.17 TCGA-BR-6453-01 2 185802505 185802505 A C ZNF804A Missense_Mutation p.E794D 0.09 deleterious(0.03) probably_damaging(0.935) TCGA-BR-6453-01 2 1893207 1893207 T C MYT1L Missense_Mutation p.S774G 0.06 tolerated(0.06) benign(0.045) TCGA-BR-6453-01 2 191524263 191524263 C T NAB1 Missense_Mutation p.R121W 0.13 deleterious(0.01) benign(0) TCGA-BR-6453-01 2 210569185 210569185 G T MAP2 Intron 0.11 TCGA-BR-6453-01 2 219846688 219846688 C T FEV Missense_Mutation p.A140T 0.19 tolerated(1) benign(0) TCGA-BR-6453-01 2 223085988 223085988 G A PAX3 Missense_Mutation p.T304M 0.07 deleterious(0.03) benign(0.312) TCGA-BR-6453-01 2 63283145 63283145 G A OTX1 Silent p.A253A 0.16 TCGA-BR-6453-01 2 73800417 73800417 C G ALMS1 Missense_Mutation p.R3804G 0.03 probably_damaging(0.963) TCGA-BR-6453-01 2 90229525 90229525 T G IGKV1D-42 Missense_Mutation p.S115R 0.11 deleterious(0.02) possibly_damaging(0.627) TCGA-BR-6453-01 3 120764302 120764302 T G STXBP5L Missense_Mutation p.S130R 0.09 deleterious(0.01) benign(0.397) TCGA-BR-6453-01 3 120977937 120977937 T G STXBP5L Missense_Mutation p.L627R 0.19 deleterious(0) probably_damaging(0.999) TCGA-BR-6453-01 3 141305575 141305575 C T RASA2 Silent p.L638L 0.18 TCGA-BR-6453-01 3 153995437 153995437 C T DHX36 Missense_Mutation p.D880N 0.14 tolerated(0.48) benign(0.007) TCGA-BR-6453-01 3 19575469 19575469 T G KCNH8 Missense_Mutation p.L1068V 0.10 tolerated_low_confidence(0.06) probably_damaging(0.984) TCGA-BR-6453-01 3 40275351 40275351 A C MYRIP Missense_Mutation p.K636T 0.14 deleterious(0.05) possibly_damaging(0.903) TCGA-BR-6453-01 3 47049917 47049917 C T NBEAL2 Missense_Mutation p.R2622C 0.13 tolerated(0.06) benign(0.043) TCGA-BR-6453-01 3 51746766 51746766 G A GRM2 Missense_Mutation p.R243H 0.13 tolerated(0.13) possibly_damaging(0.614) TCGA-BR-6453-01 3 64085187 64085187 C T PRICKLE2 Missense_Mutation p.R692H 0.10 tolerated(0.11) probably_damaging(0.939) TCGA-BR-6453-01 3 64619467 64619467 A C ADAMTS9 Missense_Mutation p.F649V 0.13 deleterious(0) probably_damaging(0.967) TCGA-BR-6453-01 3 74418456 74418456 T G CNTN3 Missense_Mutation p.K277T 0.11 deleterious(0.03) probably_damaging(0.999) TCGA-BR-6453-01 3 89176408 89176408 T C EPHA3 Silent p.S46S 0.07 TCGA-BR-6453-01 4 101108874 101108874 A G DDIT4L Missense_Mutation p.L181P 0.10 deleterious(0) probably_damaging(1) TCGA-BR-6453-01 4 110447513 110447513 T G SEC24B Missense_Mutation p.L975V 0.14 tolerated(0.2) probably_damaging(0.996) TCGA-BR-6453-01 4 115898357 115898357 T G NDST4 Missense_Mutation p.K351T 0.12 deleterious(0) possibly_damaging(0.908) TCGA-BR-6453-01 4 126237573 126237573 T G FAT4 Missense_Mutation p.L3V 0.13 benign(0.332) TCGA-BR-6453-01 4 126370493 126370493 T C FAT4 Silent p.S2774S 0.09 TCGA-BR-6453-01 4 156838589 156838589 T C TDO2 Silent p.S313S 0.11 TCGA-BR-6453-01 4 162508614 162508614 T C FSTL5 Silent p.Q336Q 0.11 TCGA-BR-6453-01 4 167833778 167833778 G A SPOCK3 Missense_Mutation p.S159F 0.11 deleterious(0.02) possibly_damaging(0.836) TCGA-BR-6453-01 4 189060622 189060622 C T TRIML1 5'UTR 0.14 TCGA-BR-6453-01 4 189060646 189060646 C T TRIML1 5'UTR 0.21 TCGA-BR-6453-01 4 5733190 5733190 A G EVC Silent p.E141E 0.04 TCGA-BR-6453-01 4 6335368 6335368 C T PPP2R2C Missense_Mutation p.R294H 0.20 deleterious(0) possibly_damaging(0.614) TCGA-BR-6453-01 4 66356149 66356149 A G EPHA5 Silent p.L450L 0.15 TCGA-BR-6453-01 4 96140209 96140209 T G UNC5C Missense_Mutation p.N519T 0.13 tolerated(0.52) benign(0.002) TCGA-BR-6453-01 5 113740388 113740388 T G KCNN2 Missense_Mutation p.L279R 0.14 deleterious(0) probably_damaging(0.962) TCGA-BR-6453-01 5 120022263 120022263 T A PRR16 Silent p.P235P 0.10 TCGA-BR-6453-01 5 131606705 131606705 G A PDLIM4 Missense_Mutation p.R142H 0.10 tolerated(0.58) benign(0.005) TCGA-BR-6453-01 5 137717277 137717277 G A KDM3B Missense_Mutation p.E260K 0.12 tolerated(0.36) benign(0.002) TCGA-BR-6453-01 5 140532003 140532003 G A PCDHB6 Missense_Mutation p.R722H 0.10 tolerated(0.14) possibly_damaging(0.623) TCGA-BR-6453-01 5 140772818 140772818 G A PCDHGA8 Silent p.A146A 0.11 TCGA-BR-6453-01 5 156514057 156514057 A G HAVCR2 3'UTR 0.14 TCGA-BR-6453-01 5 161113274 161113274 A C GABRA6 Missense_Mutation p.N26T 0.09 tolerated_low_confidence(0.06) benign(0.033) TCGA-BR-6453-01 5 175526047 175526047 C T FAM153B Silent p.N110N 0.07 TCGA-BR-6453-01 5 178416042 178416042 G A GRM6 Silent p.H416H 0.19 TCGA-BR-6453-01 5 19473497 19473497 A G CDH18 Silent p.T737T 0.15 TCGA-BR-6453-01 5 21755750 21755750 A G CDH12 Missense_Mutation p.L612P 0.09 deleterious(0) probably_damaging(0.993) TCGA-BR-6453-01 5 35763665 35763665 T G SPEF2 Missense_Mutation p.V1221G 0.06 tolerated(0.4) benign(0) TCGA-BR-6453-01 5 38425137 38425137 G T EGFLAM Missense_Mutation p.A585S 0.12 deleterious(0.04) probably_damaging(1) TCGA-BR-6453-01 5 42689103 42689103 A G GHR Missense_Mutation p.Q83R 0.14 tolerated(0.72) benign(0.018) TCGA-BR-6453-01 5 68715518 68715518 G A MARVELD2 Silent p.P102P 0.06 TCGA-BR-6453-01 6 102069857 102069857 T G GRIK2 Missense_Mutation p.M50R 0.21 tolerated(0.37) benign(0.01) TCGA-BR-6453-01 6 27114186 27114186 A C HIST1H2BK Splice_Site 0.18 TCGA-BR-6453-01 6 28963238 28963238 A T ZNF311 Missense_Mutation p.L514H 0.30 deleterious(0) probably_damaging(1) TCGA-BR-6453-01 6 29364723 29364723 T G OR12D2 Missense_Mutation p.F83V 0.24 deleterious(0.01) benign(0.277) TCGA-BR-6453-01 6 32975992 32975992 G A HLA-DOA Silent p.G43G 0.22 TCGA-BR-6453-01 6 46777187 46777187 C T MEP1A Missense_Mutation p.A98V 0.23 deleterious(0.01) possibly_damaging(0.562) TCGA-BR-6453-01 6 62757869 62757869 T C KHDRBS2 Missense_Mutation p.R84G 0.20 deleterious(0.04) probably_damaging(0.963) TCGA-BR-6453-01 6 75838046 75838046 T C COL12A1 Silent p.G2102G 0.17 TCGA-BR-6453-01 7 122033616 122033617 AT G CADPS2 Frame_Shift_Del p.K922Nfs*51 0.12 TCGA-BR-6453-01 7 136700432 136700432 T A CHRM2 Missense_Mutation p.C274S 0.09 tolerated(0.48) benign(0.216) TCGA-BR-6453-01 7 150493578 150493578 A G TMEM176B Missense_Mutation p.I27T 0.05 deleterious(0) probably_damaging(0.989) TCGA-BR-6453-01 7 21826307 21826307 C A DNAH11 Silent p.A3228A 0.15 TCGA-BR-6453-01 7 36492149 36492149 T C ANLN Silent p.V1105V 0.13 TCGA-BR-6453-01 7 37354471 37354471 A C ELMO1 Missense_Mutation p.F59V 0.13 tolerated(0.56) benign(0.094) TCGA-BR-6453-01 7 57529279 57529279 A C ZNF716 Missense_Mutation p.K371T 0.14 deleterious(0.01) possibly_damaging(0.801) TCGA-BR-6453-01 7 70885974 70885974 A C WBSCR17 Missense_Mutation p.N282T 0.14 tolerated(1) benign(0.002) TCGA-BR-6453-01 8 104898091 104898091 A C RIMS2 Missense_Mutation p.S422R 0.21 tolerated_low_confidence(0.45) possibly_damaging(0.602) TCGA-BR-6453-01 8 104898096 104898096 T G RIMS2 Silent p.S423S 0.18 TCGA-BR-6453-01 8 105260951 105260951 T C RIMS2 Silent p.L1167L 0.15 TCGA-BR-6453-01 8 105503202 105503202 A G LRP12 Missense_Mutation p.L760P 0.20 deleterious_low_confidence(0.04) probably_damaging(0.921) TCGA-BR-6453-01 8 10583717 10583717 C T SOX7 Missense_Mutation p.R285H 0.15 tolerated(0.64) benign(0.003) TCGA-BR-6453-01 8 110131681 110131681 T G TRHR Missense_Mutation p.S398R 0.05 deleterious_low_confidence(0.01) benign(0.005) TCGA-BR-6453-01 8 142487565 142487565 C T MROH5 3'UTR 0.30 TCGA-BR-6453-01 8 16026107 16026107 A G MSR1 Missense_Mutation p.S164P 0.07 tolerated(0.05) benign(0.151) TCGA-BR-6453-01 8 2949052 2949052 T G CSMD1 Missense_Mutation p.K2424T 0.08 possibly_damaging(0.583) TCGA-BR-6453-01 8 38279423 38279423 C T FGFR1 Missense_Mutation p.V356M 0.11 deleterious(0) probably_damaging(0.986) TCGA-BR-6453-01 8 54142200 54142200 C T OPRK1 Missense_Mutation p.R267H 0.12 deleterious(0) probably_damaging(1) TCGA-BR-6453-01 8 54147490 54147490 A C OPRK1 Missense_Mutation p.F147V 0.17 deleterious(0) possibly_damaging(0.874) TCGA-BR-6453-01 8 69058469 69058469 A C PREX2 Missense_Mutation p.E1371D 0.08 deleterious(0) probably_damaging(0.97) TCGA-BR-6453-01 8 70536271 70536271 A C SULF1 Missense_Mutation p.E563D 0.14 tolerated(0.68) benign(0.012) TCGA-BR-6453-01 8 91937774 91937774 C A NECAB1 Missense_Mutation p.A169D 0.11 tolerated(0.37) benign(0.055) TCGA-BR-6453-01 9 115759835 115759835 T C ZNF883 RNA 0.09 TCGA-BR-6453-01 9 120475865 120475865 T G TLR4 Missense_Mutation p.F487V 0.11 tolerated(0.33) benign(0.006) TCGA-BR-6453-01 9 139925609 139925609 C T FUT7 Silent p.A194A 0.23 TCGA-BR-6453-01 9 16436121 16436121 A G BNC2 Missense_Mutation p.F691L 0.08 tolerated(0.53) benign(0.001) TCGA-BR-6453-01 9 17415802 17415802 A G CNTLN Missense_Mutation p.K938R 0.10 tolerated(0.15) possibly_damaging(0.705) TCGA-BR-6453-01 9 5924714 5924714 T G KIAA2026 Missense_Mutation p.K877T 0.14 tolerated(0.14) probably_damaging(0.994) TCGA-BR-6453-01 9 65506437 65506437 C T SPATA31A7 Missense_Mutation p.D375N 0.13 tolerated(0.43) benign(0.084) TCGA-BR-6453-01 9 75781105 75781105 A G ANXA1 Missense_Mutation p.I267V 0.12 tolerated(0.69) benign(0.06) TCGA-BR-6453-01 9 77257530 77257530 G A RORB Missense_Mutation p.V146I 0.07 tolerated(0.43) benign(0.001) TCGA-BR-6453-01 X 107430498 107430498 T C COL4A6 Silent p.G594G 0.22 TCGA-BR-6453-01 X 107975834 107975834 A G IRS4 Silent p.D1247D 0.04 TCGA-BR-6453-01 X 123615810 123615810 T G TENM1 Missense_Mutation p.S1241R 0.24 tolerated(0.31) benign(0.014) TCGA-BR-6453-01 X 151303021 151303021 T C MAGEA10 Missense_Mutation p.S358G 0.26 tolerated(0.33) possibly_damaging(0.483) TCGA-BR-6453-01 X 153706704 153706704 G A LAGE3 Missense_Mutation p.H79Y 0.27 tolerated(1) benign(0.09) TCGA-BR-6453-01 X 46359574 46359574 G A ZNF674 Silent p.L484L 0.26 TCGA-BR-6453-01 X 51150192 51150192 A C CXorf67 Missense_Mutation p.E108D 0.21 tolerated(0.49) benign(0.001) TCGA-BR-6453-01 X 63410103 63410103 G A AMER1 Missense_Mutation p.R1022C 0.26 deleterious(0) possibly_damaging(0.847) TCGA-BR-6453-01 X 79698310 79698310 T A FAM46D Missense_Mutation p.L91H 0.21 deleterious(0.03) probably_damaging(0.983) TCGA-BR-6453-01 X 91131988 91131988 A C PCDH11X Missense_Mutation p.K250T 0.24 tolerated(0.25) benign(0.01) TCGA-BR-6454-01 10 115804689 115804689 C T ADRB1 Silent p.L266L 0.55 TCGA-BR-6454-01 10 118215240 118215240 T A PNLIPRP3 Missense_Mutation p.F155I 0.32 tolerated(0.1) possibly_damaging(0.515) TCGA-BR-6454-01 10 124189486 124189486 C T PLEKHA1 3'UTR 0.08 TCGA-BR-6454-01 10 96707655 96707655 T C CYP2C9 Silent p.L201L 0.39 TCGA-BR-6454-01 11 108121510 108121511 TC - ATM Frame_Shift_Del p.Q441Afs*45 0.30 TCGA-BR-6454-01 11 108163407 108163407 C T ATM Nonsense_Mutation p.Q1500* 0.40 TCGA-BR-6454-01 11 124949017 124949017 T G SLC37A2 Missense_Mutation p.F108L 0.17 tolerated(0.65) benign(0.029) TCGA-BR-6454-01 11 30255256 30255256 G T FSHB Missense_Mutation p.C100F 0.16 deleterious(0) probably_damaging(1) TCGA-BR-6454-01 11 33589770 33589770 G A KIAA1549L Silent p.V1112V 0.29 TCGA-BR-6454-01 11 56019933 56019933 C A OR5T3 Missense_Mutation p.H86Q 0.26 tolerated(0.06) possibly_damaging(0.468) TCGA-BR-6454-01 11 61898025 61898025 G C INCENP Missense_Mutation p.K342N 0.18 tolerated(0.08) unknown(0) TCGA-BR-6454-01 11 62648671 62648671 A C SLC3A2 Missense_Mutation p.K161T 0.33 tolerated(0.13) probably_damaging(0.999) TCGA-BR-6454-01 11 66410965 66410965 G A RBM14-RBM4 Missense_Mutation p.A128T 0.19 tolerated(0.12) benign(0.101) TCGA-BR-6454-01 11 68703977 68703977 A G IGHMBP2 Missense_Mutation p.S677G 0.08 tolerated(0.48) benign(0.002) TCGA-BR-6454-01 11 92534124 92534124 G A FAT3 Missense_Mutation p.D2649N 0.19 probably_damaging(0.992) TCGA-BR-6454-01 12 104393227 104393227 A G GLT8D2 Missense_Mutation p.V117A 0.18 tolerated(0.1) probably_damaging(0.983) TCGA-BR-6454-01 12 121018991 121018991 G A POP5 Silent p.S30S 0.16 TCGA-BR-6454-01 12 129566418 129566418 T C TMEM132D Silent p.Q603Q 0.11 TCGA-BR-6454-01 12 133233758 133233758 C T POLE Silent p.K1182K 0.19 TCGA-BR-6454-01 12 23757383 23757383 C A SOX5 Missense_Mutation p.A368S 0.14 tolerated(0.58) benign(0.003) TCGA-BR-6454-01 12 44926420 44926420 C A NELL2 Missense_Mutation p.C633F 0.39 deleterious(0) probably_damaging(0.998) TCGA-BR-6454-01 12 46244555 46244555 C G ARID2 Silent p.V883V 0.09 TCGA-BR-6454-01 12 52306272 52306272 C - ACVRL1 Frame_Shift_Del p.R7Gfs*5 0.19 TCGA-BR-6454-01 12 53004496 53004496 G A KRT73 Missense_Mutation p.R412W 0.08 deleterious(0.01) possibly_damaging(0.479) TCGA-BR-6454-01 12 56489534 56489534 C A ERBB3 Missense_Mutation p.R667S 0.41 deleterious(0) probably_damaging(1) TCGA-BR-6454-01 12 57881806 57881806 C G MARS 5'UTR 0.18 TCGA-BR-6454-01 12 6623969 6623969 G A NCAPD2 Silent p.L290L 0.14 TCGA-BR-6454-01 13 29001983 29001983 G A FLT1 Silent p.D394D 0.22 TCGA-BR-6454-01 13 29292018 29292018 T A SLC46A3 Missense_Mutation p.T40S 0.12 tolerated(0.99) benign(0.001) TCGA-BR-6454-01 13 42740687 42740687 C T DGKH Missense_Mutation p.P332L 0.12 deleterious(0) probably_damaging(0.999) TCGA-BR-6454-01 14 24724611 24724611 T A TGM1 Missense_Mutation p.N535I 0.21 deleterious(0) benign(0.115) TCGA-BR-6454-01 14 31585523 31585523 T C HECTD1 Missense_Mutation p.Y1846C 0.38 tolerated(0.17) probably_damaging(0.99) TCGA-BR-6454-01 14 65252605 65252605 T A SPTB Missense_Mutation p.K1209M 0.24 deleterious(0) probably_damaging(0.955) TCGA-BR-6454-01 14 77245378 77245378 C G VASH1 3'UTR 0.27 TCGA-BR-6454-01 14 94088124 94088124 C T UNC79 Silent p.D1338D 0.14 TCGA-BR-6454-01 15 100272076 100272076 A G LYSMD4 Missense_Mutation p.L14P 0.09 tolerated_low_confidence(0.07) benign(0.001) TCGA-BR-6454-01 15 52970229 52970229 A C FAM214A 5'UTR 0.21 TCGA-BR-6454-01 15 56704540 56704540 G C TEX9 Missense_Mutation p.S290T 0.15 tolerated(1) benign(0.002) TCGA-BR-6454-01 15 56748664 56748664 G A MNS1 Missense_Mutation p.A94V 0.12 deleterious(0.02) benign(0.17) TCGA-BR-6454-01 15 74948184 74948184 G C EDC3 Missense_Mutation p.P237R 0.23 tolerated(0.37) benign(0.079) TCGA-BR-6454-01 15 78212095 78212095 C A RP11-114H24.7 Intron 0.17 TCGA-BR-6454-01 15 81187373 81187373 T C KIAA1199 Missense_Mutation p.Y377H 0.10 tolerated_low_confidence(0.37) benign(0.026) TCGA-BR-6454-01 15 84506901 84506901 G T ADAMTSL3 Missense_Mutation p.A221S 0.12 tolerated(0.42) possibly_damaging(0.543) TCGA-BR-6454-01 15 86311859 86311859 C A KLHL25 Nonsense_Mutation p.G395* 0.19 TCGA-BR-6454-01 15 87089267 87089267 A C AGBL1 Missense_Mutation p.K861T 0.06 deleterious(0.02) possibly_damaging(0.868) TCGA-BR-6454-01 15 91304081 91304081 A G BLM Missense_Mutation p.N493S 0.07 tolerated(1) benign(0.001) TCGA-BR-6454-01 16 2134593 2134593 G A TSC2 Missense_Mutation p.R1457Q 0.24 deleterious(0) probably_damaging(0.997) TCGA-BR-6454-01 16 21698841 21698841 G A OTOA Silent p.Q169Q 0.29 TCGA-BR-6454-01 16 29979459 29979459 C A TMEM219 Missense_Mutation p.P157T 0.12 deleterious(0) probably_damaging(0.999) TCGA-BR-6454-01 16 46723060 46723060 G A VPS35 5'UTR 0.19 TCGA-BR-6454-01 16 79633675 79633675 A T MAF Missense_Mutation p.I42N 0.18 tolerated(0.3) unknown(0) TCGA-BR-6454-01 17 10544483 10544483 C T MYH3 Missense_Mutation p.R695Q 0.19 deleterious(0.01) possibly_damaging(0.65) TCGA-BR-6454-01 17 19318451 19318451 C T RNF112 Silent p.N409N 0.34 TCGA-BR-6454-01 17 27963708 27963709 - G SSH2 Frame_Shift_Ins p.S487Lfs*7 0.25 TCGA-BR-6454-01 17 28004742 28004742 C T SSH2 Missense_Mutation p.G139D 0.09 deleterious(0) probably_damaging(0.996) TCGA-BR-6454-01 17 29645449 29645449 T G EVI2A Missense_Mutation p.T218P 0.18 deleterious(0) probably_damaging(0.999) TCGA-BR-6454-01 17 33464132 33464132 T A NLE1 Missense_Mutation p.E239V 0.12 tolerated(0.78) benign(0.009) TCGA-BR-6454-01 17 40986840 40986840 C A PSME3 Missense_Mutation p.L64I 0.46 tolerated(1) benign(0.015) TCGA-BR-6454-01 17 43474031 43474031 T C ARHGAP27 Intron 0.25 TCGA-BR-6454-01 17 51901650 51901650 A C KIF2B Missense_Mutation p.N419T 0.13 deleterious(0) probably_damaging(1) TCGA-BR-6454-01 17 58469380 58469380 G T USP32 5'UTR 0.18 TCGA-BR-6454-01 17 7318354 7318354 G A NLGN2 Silent p.T308T 0.19 TCGA-BR-6454-01 17 79623539 79623539 C T PDE6G 5'UTR 0.21 TCGA-BR-6454-01 18 44260170 44260170 C T ST8SIA5 Nonsense_Mutation p.W322* 0.25 TCGA-BR-6454-01 18 63511056 63511056 T G CDH7 Missense_Mutation p.D330E 0.29 deleterious(0) possibly_damaging(0.559) TCGA-BR-6454-01 18 76753964 76753964 C T SALL3 Missense_Mutation p.T658M 0.41 deleterious(0.01) probably_damaging(0.932) TCGA-BR-6454-01 19 14589279 14589279 G A GIPC1 Silent p.F317F 0.15 TCGA-BR-6454-01 19 22018853 22018853 G - ZNF43 5'UTR 0.17 TCGA-BR-6454-01 19 2214633 2214633 G C DOT1L Intron 0.21 TCGA-BR-6454-01 19 38028045 38028045 A G ZNF793 Missense_Mutation p.K162R 0.08 tolerated(0.08) benign(0.092) TCGA-BR-6454-01 19 41383171 41383171 A T CYP2A7 Missense_Mutation p.F362Y 0.16 tolerated(0.19) benign(0.278) TCGA-BR-6454-01 19 43258561 43258561 G A PSG8 Silent p.S389S 0.35 TCGA-BR-6454-01 19 44740983 44740983 G T ZNF227 Nonstop_Mutation p.*800Yext*2 0.31 TCGA-BR-6454-01 19 49814483 49814483 G T SLC6A16 Missense_Mutation p.S41Y 0.22 tolerated(0.1) benign(0.239) TCGA-BR-6454-01 19 49862699 49862699 C T TEAD2 Missense_Mutation p.R97Q 0.41 deleterious(0.01) probably_damaging(0.996) TCGA-BR-6454-01 19 54656052 54656052 G C CNOT3 Silent p.L565L 0.13 TCGA-BR-6454-01 19 55087526 55087526 A G LILRA2 Missense_Mutation p.N402S 0.26 tolerated(1) benign(0.103) TCGA-BR-6454-01 19 56569735 56569735 T A NLRP5 Nonsense_Mutation p.C1143* 0.17 TCGA-BR-6454-01 19 58929139 58929139 C T ZNF584 Silent p.V418V 0.17 TCGA-BR-6454-01 19 6828659 6828660 - AAGCG VAV1 Frame_Shift_Ins p.D376Sfs*74 0.13 TCGA-BR-6454-01 19 9071727 9071727 T G MUC16 Missense_Mutation p.K5240T 0.16 unknown(0) TCGA-BR-6454-01 1 111215835 111215835 C T KCNA3 Missense_Mutation p.E533K 0.23 deleterious_low_confidence(0.02) benign(0.154) TCGA-BR-6454-01 1 12081808 12081808 C G MIIP Missense_Mutation p.Q9E 0.18 deleterious(0.03) unknown(0) TCGA-BR-6454-01 1 151774430 151774430 C T LINGO4 Missense_Mutation p.G251R 0.13 deleterious(0) probably_damaging(0.998) TCGA-BR-6454-01 1 152080772 152080772 G A TCHH Missense_Mutation p.R1641C 0.14 unknown(0) TCGA-BR-6454-01 1 152185612 152185612 A G HRNR Silent p.F2831F 0.33 TCGA-BR-6454-01 1 152193511 152193511 C G HRNR Silent p.G198G 0.12 TCGA-BR-6454-01 1 154033097 154033097 T G NUP210L Missense_Mutation p.E923D 0.08 deleterious(0.02) probably_damaging(0.952) TCGA-BR-6454-01 1 158549454 158549454 A C OR10X1 Missense_Mutation p.L79R 0.15 deleterious(0) probably_damaging(0.999) TCGA-BR-6454-01 1 166927077 166927077 A G ILDR2 Missense_Mutation p.V103A 0.12 deleterious(0) probably_damaging(0.99) TCGA-BR-6454-01 1 169572294 169572294 G A SELP Missense_Mutation p.R559C 0.16 tolerated(0.19) possibly_damaging(0.466) TCGA-BR-6454-01 1 178414760 178414760 C T RASAL2 Silent p.L530L 0.14 TCGA-BR-6454-01 1 197026201 197026201 A T F13B Missense_Mutation p.H371Q 0.16 tolerated(0.25) benign(0.004) TCGA-BR-6454-01 1 204511962 204511962 C T MDM4 Missense_Mutation p.L188F 0.13 tolerated(0.05) benign(0.275) TCGA-BR-6454-01 1 207039928 207039928 A T IL20 Missense_Mutation p.I109F 0.15 deleterious(0) possibly_damaging(0.649) TCGA-BR-6454-01 1 220219778 220219778 G A EPRS 5'UTR 0.25 TCGA-BR-6454-01 1 6311551 6311551 G A GPR153 Missense_Mutation p.P276S 0.24 tolerated(0.28) probably_damaging(1) TCGA-BR-6454-01 1 71418611 71418611 G T PTGER3 Silent p.I412I 0.15 TCGA-BR-6454-01 20 16486769 16486769 T G KIF16B Missense_Mutation p.S256R 0.16 deleterious(0) probably_damaging(0.999) TCGA-BR-6454-01 20 18429663 18429663 C G DZANK1 Missense_Mutation p.E198D 0.13 deleterious(0) possibly_damaging(0.88) TCGA-BR-6454-01 20 34526800 34526800 C T PHF20 Missense_Mutation p.R828C 0.17 deleterious(0.05) benign(0.391) TCGA-BR-6454-01 20 34778617 34778617 C T EPB41L1 Nonsense_Mutation p.Q400* 0.09 TCGA-BR-6454-01 20 42252656 42252656 G A IFT52 Silent p.L298L 0.07 TCGA-BR-6454-01 20 42574562 42574562 A G TOX2 Intron 0.04 TCGA-BR-6454-01 20 44674590 44674590 G A SLC12A5 Missense_Mutation p.G571D 0.09 deleterious(0) probably_damaging(0.998) TCGA-BR-6454-01 20 49509123 49509123 G C ADNP Missense_Mutation p.P710A 0.05 tolerated(0.59) benign(0.001) TCGA-BR-6454-01 20 55100041 55100041 A G FAM209A Silent p.K59K 0.08 TCGA-BR-6454-01 20 61588204 61588204 C G SLC17A9 Silent p.V49V 0.09 TCGA-BR-6454-01 21 31744376 31744376 G A KRTAP13-2 Silent p.L52L 0.08 TCGA-BR-6454-01 21 31933515 31933515 A C KRTAP19-7 Missense_Mutation p.F32V 0.11 deleterious_low_confidence(0) unknown(0) TCGA-BR-6454-01 21 38845158 38845158 G C DYRK1A Missense_Mutation p.Q61H 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.73) TCGA-BR-6454-01 21 42821220 42821220 C T MX1 Missense_Mutation p.T477M 0.19 tolerated(0.1) probably_damaging(0.953) TCGA-BR-6454-01 22 36681783 36681783 G A MYH9 Missense_Mutation p.A1732V 0.29 benign(0.145) TCGA-BR-6454-01 22 38482283 38482283 C G BAIAP2L2 Missense_Mutation p.S478T 0.36 deleterious(0.02) benign(0.211) TCGA-BR-6454-01 22 40417550 40417550 C T FAM83F Missense_Mutation p.R346W 0.15 deleterious(0) possibly_damaging(0.88) TCGA-BR-6454-01 2 119751970 119751970 G A MARCO Silent p.G479G 0.18 TCGA-BR-6454-01 2 121746631 121746631 G A GLI2 Silent p.A1047A 0.28 TCGA-BR-6454-01 2 197183523 197183523 C T HECW2 Silent p.S697S 0.10 TCGA-BR-6454-01 2 202002532 202002532 C T CFLAR Intron 0.18 TCGA-BR-6454-01 2 205989155 205989155 G T PARD3B Missense_Mutation p.D424Y 0.16 deleterious(0) probably_damaging(1) TCGA-BR-6454-01 2 20870362 20870362 C T GDF7 Missense_Mutation p.P177L 0.23 tolerated(0.62) benign(0.005) TCGA-BR-6454-01 2 232392858 232392858 G A NMUR1 Missense_Mutation p.R292W 0.10 deleterious(0) probably_damaging(0.997) TCGA-BR-6454-01 2 27861084 27861084 T A GPN1 Missense_Mutation p.Y192N 0.20 deleterious(0) probably_damaging(0.998) TCGA-BR-6454-01 2 50724814 50724814 T A NRXN1 Missense_Mutation p.N886Y 0.25 deleterious(0) probably_damaging(0.999) TCGA-BR-6454-01 2 56420020 56420020 G A CCDC85A Missense_Mutation p.A229T 0.16 tolerated(0.52) benign(0.004) TCGA-BR-6454-01 2 70033572 70033572 T A ANXA4 Missense_Mutation p.V83E 0.16 deleterious(0.02) possibly_damaging(0.642) TCGA-BR-6454-01 2 86716717 86716717 C G KDM3A Missense_Mutation p.P1170A 0.14 deleterious(0) probably_damaging(0.999) TCGA-BR-6454-01 3 124515266 124515266 G A ITGB5 Silent p.S554S 0.12 TCGA-BR-6454-01 3 140122503 140122503 G T CLSTN2 Nonsense_Mutation p.E89* 0.14 TCGA-BR-6454-01 3 154856014 154856014 G A MME Missense_Mutation p.E282K 0.20 tolerated(0.17) possibly_damaging(0.754) TCGA-BR-6454-01 3 167090733 167090733 A G ZBBX 5'UTR 0.44 TCGA-BR-6454-01 3 178952007 178952007 A G PIK3CA Missense_Mutation p.Y1021C 0.21 deleterious(0) probably_damaging(0.999) TCGA-BR-6454-01 3 193176728 193176728 C G ATP13A4 Intron 0.18 TCGA-BR-6454-01 3 49928023 49928023 G C MST1R Missense_Mutation p.D1235E 0.19 deleterious(0) probably_damaging(0.933) TCGA-BR-6454-01 4 126370611 126370611 G T FAT4 Missense_Mutation p.A2814S 0.19 benign(0.026) TCGA-BR-6454-01 4 183713739 183713739 G T TENM3 Nonsense_Mutation p.E1972* 0.19 TCGA-BR-6454-01 4 70512808 70512808 C A UGT2A1 Missense_Mutation p.K185N 0.10 tolerated(0.08) probably_damaging(0.978) TCGA-BR-6454-01 5 13922344 13922344 C T DNAH5 Missense_Mutation p.A178T 0.25 possibly_damaging(0.483) TCGA-BR-6454-01 5 1409887 1409887 C T SLC6A3 Silent p.T449T 0.09 TCGA-BR-6454-01 5 141033762 141033762 C A ARAP3 Nonsense_Mutation p.E1464* 0.21 TCGA-BR-6454-01 5 16067798 16067798 C T MARCH11 Missense_Mutation p.E331K 0.42 tolerated(0.07) possibly_damaging(0.787) TCGA-BR-6454-01 5 32089722 32089722 C T PDZD2 Silent p.R2056R 0.16 TCGA-BR-6454-01 5 7396565 7396565 C G ADCY2 Silent p.L52L 0.15 TCGA-BR-6454-01 5 7832018 7832018 T G C5orf49 Missense_Mutation p.K130T 0.26 deleterious(0.02) probably_damaging(0.989) TCGA-BR-6454-01 6 11105535 11105535 C T ERVFRD-1 Silent p.L3L 0.19 TCGA-BR-6454-01 6 126248844 126248844 C G NCOA7 Missense_Mutation p.F853L 0.06 tolerated(0.26) benign(0.05) TCGA-BR-6454-01 6 127471646 127471646 T A RSPO3 Missense_Mutation p.L122H 0.38 tolerated(0.12) benign(0.04) TCGA-BR-6454-01 6 143749634 143749634 G A ADAT2 Missense_Mutation p.S181L 0.19 tolerated(0.05) possibly_damaging(0.587) TCGA-BR-6454-01 6 160560841 160560841 G A SLC22A1 Missense_Mutation p.M406I 0.19 tolerated(0.08) benign(0.001) TCGA-BR-6454-01 6 26056139 26056139 C G HIST1H1C Missense_Mutation p.S173T 0.47 tolerated(0.09) benign(0.184) TCGA-BR-6454-01 6 26204985 26204985 T A HIST1H4E Missense_Mutation p.L38H 0.38 deleterious(0.02) probably_damaging(0.999) TCGA-BR-6454-01 6 33679443 33679443 C T UQCC2 Silent p.R7R 0.09 TCGA-BR-6454-01 6 84563444 84563444 C T RIPPLY2 Silent p.D42D 0.09 TCGA-BR-6454-01 7 77885499 77885499 A C MAGI2 Missense_Mutation p.L603R 0.11 deleterious(0) probably_damaging(0.926) TCGA-BR-6454-01 7 81600126 81600126 A T CACNA2D1 Intron 0.10 TCGA-BR-6454-01 7 88963320 88963320 G T ZNF804B Nonsense_Mutation p.E342* 0.11 TCGA-BR-6454-01 7 91632525 91632525 A C AKAP9 Missense_Mutation p.E1098D 0.09 probably_damaging(0.943) TCGA-BR-6454-01 7 98503872 98503872 C T TRRAP Missense_Mutation p.T370I 0.06 benign(0) TCGA-BR-6454-01 7 98581821 98581821 T A TRRAP Missense_Mutation p.I3047N 0.08 probably_damaging(0.996) TCGA-BR-6454-01 8 101075729 101075729 T C RGS22 Missense_Mutation p.K423E 0.13 deleterious(0.02) possibly_damaging(0.459) TCGA-BR-6454-01 8 104427550 104427550 G A DCAF13 Missense_Mutation p.R111H 0.18 tolerated_low_confidence(0.09) benign(0.018) TCGA-BR-6454-01 8 104709365 104709365 A G RIMS2 Silent p.G76G 0.18 TCGA-BR-6454-01 8 133898821 133898821 G T TG Missense_Mutation p.A402S 0.05 tolerated(0.14) benign(0.043) TCGA-BR-6454-01 8 26722075 26722075 C T ADRA1A Missense_Mutation p.V138I 0.16 deleterious(0.02) possibly_damaging(0.603) TCGA-BR-6454-01 8 30701489 30701489 A C TEX15 Nonsense_Mutation p.L1682* 0.18 TCGA-BR-6454-01 8 56686167 56686167 G C TGS1 5'UTR 0.06 TCGA-BR-6454-01 8 75262744 75262744 G A GDAP1 Silent p.A16A 0.21 TCGA-BR-6454-01 9 111947780 111947780 T A EPB41L4B Nonsense_Mutation p.K803* 0.15 TCGA-BR-6454-01 9 118974066 118974066 G A PAPPA Silent p.E591E 0.16 TCGA-BR-6454-01 9 134497285 134497285 C A RAPGEF1 Missense_Mutation p.K602N 0.22 deleterious(0.01) possibly_damaging(0.653) TCGA-BR-6454-01 9 136253262 136253262 A C C9orf96 Missense_Mutation p.E109A 0.24 deleterious(0.02) possibly_damaging(0.744) TCGA-BR-6454-01 9 40773447 40773447 T G ZNF658 Missense_Mutation p.T610P 0.15 deleterious(0.02) possibly_damaging(0.589) TCGA-BR-6454-01 9 79634960 79634960 C T FOXB2 Silent p.A130A 0.25 TCGA-BR-6454-01 9 8331655 8331655 T C PTPRD Missense_Mutation p.I1821V 0.30 deleterious(0.02) possibly_damaging(0.898) TCGA-BR-6454-01 X 101768854 101768854 G T TMSB15A 3'UTR 0.56 TCGA-BR-6454-01 X 103349893 103349893 C T SLC25A53 Silent p.T16T 0.45 TCGA-BR-6454-01 X 127185859 127185859 G A ACTRT1 Silent p.T109T 0.34 TCGA-BR-6454-01 X 150349052 150349052 C T GPR50 Missense_Mutation p.R333C 0.31 deleterious(0.01) benign(0.007) TCGA-BR-6454-01 X 154176146 154176146 G T F8 Nonsense_Mutation p.S647* 0.42 TCGA-BR-6454-01 X 3227890 3227890 C A MXRA5 Missense_Mutation p.G2785V 0.31 deleterious(0) probably_damaging(0.999) TCGA-BR-6454-01 X 47422726 47422726 G C ARAF Missense_Mutation p.K66N 0.18 tolerated(0.39) benign(0.119) TCGA-BR-6454-01 X 54014281 54014281 G A PHF8 Silent p.D645D 0.19 TCGA-BR-6454-01 X 66765698 66765698 A G AR Missense_Mutation p.K237R 0.54 tolerated_low_confidence(0.21) probably_damaging(0.997) TCGA-BR-6454-01 X 78216896 78216896 T A P2RY10 Silent p.L293L 0.25 TCGA-BR-6455-01 10 100154955 100154955 A G PYROXD2 Silent p.S261S 0.67 TCGA-BR-6455-01 10 95372701 95372701 G A PDE6C Silent p.G73G 0.79 TCGA-BR-6455-01 11 102195339 102195339 G C BIRC3 Missense_Mutation p.M33I 0.28 tolerated(0.22) benign(0.012) TCGA-BR-6455-01 11 33106623 33106623 G A CSTF3 3'UTR 0.21 TCGA-BR-6455-01 11 47604020 47604020 G A NDUFS3 Silent p.E209E 0.24 TCGA-BR-6455-01 11 58391516 58391516 C T CNTF Nonsense_Mutation p.Q42* 0.25 TCGA-BR-6455-01 11 60476242 60476242 C T MS4A8 Silent p.Y174Y 0.26 TCGA-BR-6455-01 11 69518053 69518053 G A FGF19 Silent p.G104G 0.16 TCGA-BR-6455-01 12 2719812 2719812 G T CACNA1C Nonsense_Mutation p.E1242* 0.29 TCGA-BR-6455-01 12 3131110 3131110 C T TEAD4 Missense_Mutation p.P275L 0.26 deleterious(0.01) probably_damaging(0.996) TCGA-BR-6455-01 12 34179654 34179654 C T ALG10 Missense_Mutation p.P409L 0.08 deleterious(0) probably_damaging(0.996) TCGA-BR-6455-01 12 46298723 46298724 AA - ARID2 Frame_Shift_Del p.K1791Efs*3 0.21 TCGA-BR-6455-01 12 49424062 49424062 C T KMT2D Splice_Site p.X4667_splice 0.36 TCGA-BR-6455-01 12 52470726 52470726 C A C12orf44 Silent p.R137R 0.05 TCGA-BR-6455-01 12 56975886 56975886 G A RBMS2 Missense_Mutation p.A275T 0.33 tolerated(0.36) benign(0.004) TCGA-BR-6455-01 12 85677378 85677378 A G ALX1 Silent p.G85G 0.13 TCGA-BR-6455-01 13 44433927 44433927 A G CCDC122 Missense_Mutation p.W146R 0.32 tolerated(0.29) benign(0.033) TCGA-BR-6455-01 14 52508986 52508986 C T NID2 Silent p.L554L 0.29 TCGA-BR-6455-01 14 64894054 64894054 G C MTHFD1 Splice_Site p.X376_splice 0.38 TCGA-BR-6455-01 15 51503068 51503068 C T CYP19A1 Silent p.E483E 0.60 TCGA-BR-6455-01 16 1891975 1891975 C T MEIOB Splice_Site p.X294_splice 0.28 TCGA-BR-6455-01 16 19126204 19126204 G A ITPRIPL2 Missense_Mutation p.G141S 0.27 tolerated(0.2) benign(0.002) TCGA-BR-6455-01 16 28855126 28855126 G A TUFM Silent p.S375S 0.28 TCGA-BR-6455-01 16 339583 339583 G A AXIN1 Silent p.G773G 0.30 TCGA-BR-6455-01 16 70908761 70908761 G A HYDIN Missense_Mutation p.A3540V 0.38 benign(0.002) TCGA-BR-6455-01 16 74750315 74750315 C A FA2H Silent p.P323P 0.09 TCGA-BR-6455-01 17 10362660 10362660 G A MYH4 Silent p.L499L 0.32 TCGA-BR-6455-01 17 1945948 1945948 G A OVCA2 Silent p.Q78Q 0.31 TCGA-BR-6455-01 17 42338119 42338119 G A SLC4A1 Missense_Mutation p.A78V 0.41 tolerated(0.06) benign(0.002) TCGA-BR-6455-01 17 4646694 4646694 C T ZMYND15 Missense_Mutation p.P414L 0.26 tolerated(0.17) probably_damaging(0.946) TCGA-BR-6455-01 17 54912541 54912541 C T DGKE Missense_Mutation p.R129W 0.31 deleterious(0) probably_damaging(0.993) TCGA-BR-6455-01 17 79428363 79428363 C T RP11-1055B8.7 Missense_Mutation p.A2225V 0.28 possibly_damaging(0.63) TCGA-BR-6455-01 18 5398077 5398077 C T EPB41L3 Silent p.A805A 0.35 TCGA-BR-6455-01 19 10305550 10305550 C A DNMT1 Missense_Mutation p.R9L 0.09 tolerated_low_confidence(0.1) probably_damaging(0.999) TCGA-BR-6455-01 19 15989736 15989736 C T CYP4F2 Missense_Mutation p.G470R 0.06 deleterious(0) probably_damaging(1) TCGA-BR-6455-01 19 18420552 18420552 G A LSM4 Silent p.R88R 0.40 TCGA-BR-6455-01 19 39882040 39882040 T C MED29 Missense_Mutation p.L14P 0.27 deleterious_low_confidence(0) possibly_damaging(0.766) TCGA-BR-6455-01 19 40895832 40895832 G A HIPK4 5'UTR 0.40 TCGA-BR-6455-01 19 43990419 43990419 G A PHLDB3 Missense_Mutation p.T495M 0.15 tolerated(0.43) benign(0.001) TCGA-BR-6455-01 19 49619588 49619588 G A LIN7B Silent p.T99T 0.31 TCGA-BR-6455-01 19 52857558 52857558 C T ZNF610 Missense_Mutation p.P82L 0.27 tolerated(0.19) benign(0.004) TCGA-BR-6455-01 19 55606106 55606106 C T PPP1R12C Silent p.P505P 0.24 TCGA-BR-6455-01 1 115258748 115258748 C A NRAS Missense_Mutation p.G12C 0.36 deleterious(0.04) probably_damaging(0.955) TCGA-BR-6455-01 1 1372328 1372328 G A VWA1 Missense_Mutation p.R32Q 0.13 tolerated(0.63) benign(0) TCGA-BR-6455-01 1 144916601 144916601 G A PDE4DIP Missense_Mutation p.T585M 0.03 deleterious(0) probably_damaging(0.999) TCGA-BR-6455-01 1 151396574 151396574 G A POGZ Silent p.G458G 0.34 TCGA-BR-6455-01 1 152080964 152080964 G A TCHH Missense_Mutation p.R1577C 0.35 unknown(0) TCGA-BR-6455-01 1 203134919 203134919 G A ADORA1 Missense_Mutation p.R291H 0.36 deleterious(0) possibly_damaging(0.465) TCGA-BR-6455-01 1 228524806 228524806 G A OBSCN Missense_Mutation p.V6504I 0.26 probably_damaging(0.938) TCGA-BR-6455-01 1 237801713 237801713 G A RYR2 Silent p.K2283K 0.35 TCGA-BR-6455-01 1 27107162 27107162 T G ARID1A Missense_Mutation p.L2258R 0.45 probably_damaging(0.994) TCGA-BR-6455-01 1 38272879 38272879 C A YRDC Missense_Mutation p.R133L 0.40 tolerated(0.3) benign(0.008) TCGA-BR-6455-01 1 71478123 71478123 G A PTGER3 Silent p.H314H 0.39 TCGA-BR-6455-01 1 92508453 92508453 G T EPHX4 Nonsense_Mutation p.G131* 0.26 TCGA-BR-6455-01 20 36932707 36932707 G A BPI Missense_Mutation p.V32I 0.25 tolerated(0.16) benign(0.001) TCGA-BR-6455-01 20 47589805 47589805 G A ARFGEF2 Missense_Mutation p.G550E 0.21 deleterious(0.01) possibly_damaging(0.642) TCGA-BR-6455-01 21 37833744 37833744 T C CLDN14 Missense_Mutation p.M84V 0.26 deleterious(0) probably_damaging(0.996) TCGA-BR-6455-01 22 38352790 38352790 G A POLR2F Missense_Mutation p.D11N 0.26 tolerated(0.17) unknown(0) TCGA-BR-6455-01 22 46640993 46640993 G A CDPF1 Missense_Mutation p.T123M 0.24 deleterious_low_confidence(0) possibly_damaging(0.9) TCGA-BR-6455-01 22 50682244 50682244 G A TUBGCP6 Silent p.F215F 0.28 TCGA-BR-6455-01 2 113940394 113940394 G T PSD4 Missense_Mutation p.A121S 0.27 tolerated_low_confidence(1) benign(0.003) TCGA-BR-6455-01 2 11750964 11750964 G A GREB1 Silent p.P939P 0.34 TCGA-BR-6455-01 2 160132102 160132102 C A WDSUB1 Missense_Mutation p.D211Y 0.39 deleterious(0) probably_damaging(1) TCGA-BR-6455-01 2 1653281 1653281 G A PXDN Silent p.G757G 0.32 TCGA-BR-6455-01 2 171371472 171371472 G A MYO3B Missense_Mutation p.A1138T 0.32 tolerated_low_confidence(0.69) benign(0) TCGA-BR-6455-01 2 179454415 179454415 A T TTN Missense_Mutation p.D20679E 0.27 TCGA-BR-6455-01 2 207172945 207172945 G A ZDBF2 Silent p.T1231T 0.33 TCGA-BR-6455-01 2 232458738 232458738 G A C2orf57 Missense_Mutation p.R359H 0.23 tolerated(1) benign(0) TCGA-BR-6455-01 2 241569891 241569891 G A GPR35 Silent p.A205A 0.07 TCGA-BR-6455-01 2 74143812 74143812 G A ACTG2 Missense_Mutation p.G303S 0.28 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-BR-6455-01 2 79878715 79878715 A T CTNNA2 Missense_Mutation p.K11N 0.33 tolerated(0.11) possibly_damaging(0.571) TCGA-BR-6455-01 3 128848873 128848873 T C ISY1 3'UTR 0.12 TCGA-BR-6455-01 3 129140548 129140548 A T EFCAB12 Missense_Mutation p.F50I 0.38 deleterious(0) benign(0.219) TCGA-BR-6455-01 3 130162345 130162345 G A COL6A5 Silent p.P2171P 0.33 TCGA-BR-6455-01 3 136664893 136664893 G A NCK1 Missense_Mutation p.C232Y 0.35 deleterious(0) probably_damaging(1) TCGA-BR-6455-01 3 178927980 178927980 T C PIK3CA Missense_Mutation p.C420R 0.27 tolerated(0.21) possibly_damaging(0.893) TCGA-BR-6455-01 3 37365781 37365781 G A GOLGA4 Missense_Mutation p.V824I 0.27 benign(0.002) TCGA-BR-6455-01 3 50254855 50254855 G A SLC38A3 RNA 0.26 TCGA-BR-6455-01 3 52380535 52380535 C T DNAH1 Silent p.A568A 0.23 TCGA-BR-6455-01 3 52417495 52417495 G A DNAH1 Missense_Mutation p.V2679I 0.28 benign(0.005) TCGA-BR-6455-01 3 52426895 52426895 G A DNAH1 Missense_Mutation p.R3443H 0.34 probably_damaging(0.987) TCGA-BR-6455-01 4 130030790 130030790 C G C4orf33 Missense_Mutation p.P153A 0.30 deleterious(0.01) benign(0.205) TCGA-BR-6455-01 4 134111413 134111413 G T PCDH10 3'UTR 0.33 TCGA-BR-6455-01 4 149041319 149041319 T C NR3C2 Silent p.L877L 0.20 TCGA-BR-6455-01 4 44449880 44449880 G A KCTD8 Missense_Mutation p.R221C 0.40 deleterious(0) probably_damaging(0.99) TCGA-BR-6455-01 5 112888990 112888990 G A YTHDC2 Missense_Mutation p.D601N 0.27 deleterious(0.02) benign(0.078) TCGA-BR-6455-01 5 131552925 131552925 G A P4HA2 Missense_Mutation p.A99V 0.34 tolerated(0.16) benign(0.008) TCGA-BR-6455-01 5 137475855 137475855 C T BRD8 Missense_Mutation p.V1206I 0.33 tolerated_low_confidence(0.21) benign(0.001) TCGA-BR-6455-01 5 140559781 140559781 G A PCDHB8 Silent p.S722S 0.25 TCGA-BR-6455-01 5 145317619 145317619 C T SH3RF2 Missense_Mutation p.A43V 0.28 deleterious(0) possibly_damaging(0.472) TCGA-BR-6455-01 5 148748009 148748009 C T PCYOX1L Missense_Mutation p.P426L 0.35 deleterious(0) possibly_damaging(0.902) TCGA-BR-6455-01 5 158158138 158158138 C T EBF1 Missense_Mutation p.G355D 0.32 deleterious(0) probably_damaging(1) TCGA-BR-6455-01 5 169689677 169689677 C A LCP2 Missense_Mutation p.R296S 0.16 tolerated(0.11) benign(0.063) TCGA-BR-6455-01 5 39202557 39202557 G A FYB Missense_Mutation p.A179V 0.35 tolerated(0.87) benign(0.002) TCGA-BR-6455-01 5 93077167 93077167 A C POU5F2 Missense_Mutation p.L35V 0.33 deleterious(0.04) benign(0.364) TCGA-BR-6455-01 6 137245222 137245222 C T SLC35D3 Silent p.H213H 0.27 TCGA-BR-6455-01 6 146720544 146720544 C T GRM1 Missense_Mutation p.T790I 0.36 deleterious(0) probably_damaging(0.995) TCGA-BR-6455-01 6 152651705 152651705 G A SYNE1 Silent p.A4705A 0.24 TCGA-BR-6455-01 6 32726820 32726820 T A HLA-DQB2 Silent p.P151P 0.16 TCGA-BR-6455-01 6 51512896 51512896 C A PKHD1 Silent p.L3777L 0.27 TCGA-BR-6455-01 6 75893230 75893230 C T COL12A1 Missense_Mutation p.R476K 0.32 benign(0.007) TCGA-BR-6455-01 7 100678664 100678664 G A MUC17 Missense_Mutation p.E1323K 0.31 unknown(0) TCGA-BR-6455-01 7 100684284 100684284 C A MUC17 Missense_Mutation p.T3196N 0.36 benign(0.027) TCGA-BR-6455-01 7 112102348 112102348 T C IFRD1 Missense_Mutation p.L274P 0.34 deleterious(0) probably_damaging(0.975) TCGA-BR-6455-01 7 135418743 135418743 G T FAM180A Missense_Mutation p.Q168K 0.23 tolerated_low_confidence(0.42) benign(0.005) TCGA-BR-6455-01 7 43917871 43917871 G A URGCP Silent p.N397N 0.34 TCGA-BR-6455-01 7 45614571 45614571 C T ADCY1 Silent p.G143G 0.35 TCGA-BR-6455-01 7 552006 552006 G A PDGFA Missense_Mutation p.R83W 0.33 deleterious(0) probably_damaging(0.998) TCGA-BR-6455-01 8 139209873 139209873 C T FAM135B Missense_Mutation p.A237T 0.18 deleterious(0) probably_damaging(0.973) TCGA-BR-6455-01 8 144997456 144997456 G A PLEC Missense_Mutation p.A2351V 0.48 possibly_damaging(0.534) TCGA-BR-6455-01 9 104356919 104356919 C T PPP3R2 Silent p.A98A 0.30 TCGA-BR-6455-01 9 131768031 131768031 T C NUP188 Silent p.N1615N 0.34 TCGA-BR-6455-01 9 139835750 139835750 G A FBXW5 Silent p.D470D 0.26 TCGA-BR-6455-01 9 139960781 139960781 C T SAPCD2 Missense_Mutation p.R206Q 0.47 deleterious(0.04) benign(0.028) TCGA-BR-6455-01 9 35562915 35562915 G A FAM166B Missense_Mutation p.P150L 0.33 tolerated(0.18) benign(0.004) TCGA-BR-6455-01 X 39931763 39931763 C A BCOR Nonsense_Mutation p.E946* 0.45 TCGA-BR-6456-01 10 101829528 101829528 G A CPN1 Silent p.N173N 0.32 TCGA-BR-6456-01 10 30615481 30615481 T G MTPAP Missense_Mutation p.L288F 0.20 deleterious(0.05) benign(0.197) TCGA-BR-6456-01 11 102496027 102496027 G A MMP20 Silent p.G8G 0.23 TCGA-BR-6456-01 11 102584178 102584178 A T MMP8 Missense_Mutation p.H435Q 0.38 deleterious(0) benign(0.003) TCGA-BR-6456-01 11 103270478 103270478 A T DYNC2H1 Missense_Mutation p.N4089Y 0.33 benign(0.009) TCGA-BR-6456-01 11 128680436 128680436 G T FLI1 Silent p.G304G 0.36 TCGA-BR-6456-01 11 46799806 46799806 C A CKAP5 Missense_Mutation p.R877S 0.23 deleterious(0) probably_damaging(0.992) TCGA-BR-6456-01 12 109316488 109316488 C A SVOP Missense_Mutation p.W313C 0.13 deleterious(0.01) probably_damaging(0.935) TCGA-BR-6456-01 12 109719324 109719324 C A FOXN4 Silent p.P394P 0.32 TCGA-BR-6456-01 12 40671789 40671789 T C LRRK2 Missense_Mutation p.S681P 0.10 tolerated(0.27) possibly_damaging(0.703) TCGA-BR-6456-01 12 45444623 45444623 C T DBX2 Missense_Mutation p.G30S 0.25 deleterious(0.03) probably_damaging(0.999) TCGA-BR-6456-01 13 110861227 110861227 C T COL4A1 Missense_Mutation p.G221D 0.29 unknown(0) TCGA-BR-6456-01 14 77910667 77910668 TC - VIPAS39 Frame_Shift_Del p.R174Ifs*19 0.31 TCGA-BR-6456-01 15 48527094 48527094 T G SLC12A1 Missense_Mutation p.F370V 0.25 deleterious(0.04) probably_damaging(0.949) TCGA-BR-6456-01 16 31500611 31500611 C A SLC5A2 Silent p.L539L 0.12 TCGA-BR-6456-01 17 26105786 26105786 T C NOS2 Missense_Mutation p.H404R 0.29 tolerated(1) possibly_damaging(0.634) TCGA-BR-6456-01 17 6902654 6902654 G A ALOX12 Missense_Mutation p.E226K 0.26 tolerated(0.69) benign(0.102) TCGA-BR-6456-01 17 7578271 7578271 T C TP53 Missense_Mutation p.H193R 0.21 deleterious(0) probably_damaging(1) TCGA-BR-6456-01 19 17641671 17641671 G A FAM129C Missense_Mutation p.G86R 0.24 tolerated(0.16) benign(0.07) TCGA-BR-6456-01 19 3600596 3600596 G A TBXA2R Missense_Mutation p.R13W 0.26 deleterious(0.01) probably_damaging(0.981) TCGA-BR-6456-01 19 36229073 36229075 AGA - KMT2B In_Frame_Del p.K2619del 0.42 TCGA-BR-6456-01 19 3789316 3789316 T A MATK Missense_Mutation p.R10S 0.39 deleterious_low_confidence(0) benign(0.227) TCGA-BR-6456-01 19 53669357 53669357 C T ZNF665 Missense_Mutation p.R129K 0.23 tolerated(0.59) benign(0.012) TCGA-BR-6456-01 19 9057759 9057759 G C MUC16 Missense_Mutation p.A9896G 0.04 unknown(0) TCGA-BR-6456-01 1 160783561 160783561 A G LY9 Missense_Mutation p.H197R 0.10 tolerated(0.25) benign(0.225) TCGA-BR-6456-01 1 204380537 204380537 C G PPP1R15B Translation_Start_Site p.M1? 0.08 deleterious_low_confidence(0) possibly_damaging(0.841) TCGA-BR-6456-01 1 242016726 242016726 A G EXO1 Silent p.R116R 0.28 TCGA-BR-6456-01 1 43851858 43851858 G A MED8 Missense_Mutation p.T178I 0.15 deleterious(0) probably_damaging(0.999) TCGA-BR-6456-01 1 59042472 59042472 G A TACSTD2 Silent p.C119C 0.19 TCGA-BR-6456-01 2 1643143 1643143 C G PXDN Missense_Mutation p.R1335T 0.17 deleterious(0.01) benign(0.355) TCGA-BR-6456-01 2 231379989 231379989 G T SP100 Intron 0.28 TCGA-BR-6456-01 3 118645024 118645024 C T IGSF11 Silent p.E168E 0.18 TCGA-BR-6456-01 3 119112366 119112366 C T ARHGAP31 Missense_Mutation p.R312C 0.22 deleterious(0) probably_damaging(0.999) TCGA-BR-6456-01 3 129389972 129389972 G T TMCC1 Missense_Mutation p.Q238K 0.20 tolerated(0.15) possibly_damaging(0.846) TCGA-BR-6456-01 3 38941492 38941492 G A SCN11A Nonsense_Mutation p.R639* 0.32 TCGA-BR-6456-01 3 42735277 42735277 G A HHATL Silent p.S360S 0.20 TCGA-BR-6456-01 4 57797479 57797479 G T REST Missense_Mutation p.D819Y 0.25 deleterious(0) possibly_damaging(0.498) TCGA-BR-6456-01 5 140712464 140712464 C T PCDHGA1 Missense_Mutation p.S738L 0.25 deleterious_low_confidence(0) benign(0.082) TCGA-BR-6456-01 5 176026581 176026581 G T GPRIN1 Missense_Mutation p.D85E 0.25 tolerated(1) benign(0.002) TCGA-BR-6456-01 5 33561157 33561157 C A ADAMTS12 Missense_Mutation p.G1367V 0.13 tolerated(0.13) benign(0.209) TCGA-BR-6456-01 5 89938526 89938526 C T GPR98 Missense_Mutation p.P772S 0.23 possibly_damaging(0.857) TCGA-BR-6456-01 7 74167453 74167453 T C GTF2I Missense_Mutation p.V862A 0.21 tolerated(0.28) probably_damaging(0.944) TCGA-BR-6456-01 8 133900554 133900554 G A TG Silent p.P834P 0.20 TCGA-BR-6456-01 8 59059521 59059521 G T FAM110B Silent p.V244V 0.33 TCGA-BR-6456-01 9 117808831 117808831 A C TNC Silent p.S1661S 0.24 TCGA-BR-6456-01 X 109695526 109695526 T C RGAG1 Silent p.L561L 0.23 TCGA-BR-6456-01 X 122744807 122744807 A G THOC2 Missense_Mutation p.S1588P 0.16 deleterious_low_confidence(0.01) benign(0.014) TCGA-BR-6456-01 X 151808925 151808925 G T GABRQ Missense_Mutation p.G79V 0.15 deleterious(0) probably_damaging(1) TCGA-BR-6456-01 X 9693756 9693756 T C GPR143 3'UTR 0.20 TCGA-BR-6457-01 10 5766451 5766451 G A FAM208B Silent p.G102G 0.10 TCGA-BR-6457-01 10 88220968 88220968 C T WAPAL Missense_Mutation p.R816Q 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-BR-6457-01 10 91533796 91533796 A G KIF20B Silent p.T1778T 0.05 TCGA-BR-6457-01 10 93250996 93250996 G A HECTD2 Missense_Mutation p.D411N 0.08 tolerated(0.4) benign(0.013) TCGA-BR-6457-01 11 120811160 120811160 C T GRIK4 Silent p.R527R 0.16 TCGA-BR-6457-01 11 32632734 32632734 C T CCDC73 Missense_Mutation p.E992K 0.10 deleterious(0.02) benign(0.134) TCGA-BR-6457-01 11 49974468 49974468 C T OR4C13 Missense_Mutation p.P165L 0.15 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-BR-6457-01 11 55541130 55541130 T G OR5D13 Missense_Mutation p.F73V 0.08 deleterious(0.03) benign(0.103) TCGA-BR-6457-01 11 61539366 61539366 T C MYRF Missense_Mutation p.W353R 0.11 deleterious(0) probably_damaging(0.999) TCGA-BR-6457-01 11 62299903 62299903 G A AHNAK Silent p.P662P 0.12 TCGA-BR-6457-01 11 62747361 62747361 C A SLC22A6 Missense_Mutation p.S366I 0.09 deleterious(0) possibly_damaging(0.892) TCGA-BR-6457-01 11 64854058 64854058 G A ZFPL1 Missense_Mutation p.R129Q 0.15 deleterious(0) benign(0.404) TCGA-BR-6457-01 11 64875710 64875710 A G VPS51 Missense_Mutation p.E256G 0.25 tolerated(0.1) possibly_damaging(0.521) TCGA-BR-6457-01 11 92918925 92918925 A T SLC36A4 Missense_Mutation p.D37E 0.12 tolerated(0.37) benign(0.111) TCGA-BR-6457-01 12 101520783 101520783 C T ANO4 Missense_Mutation p.R900C 0.15 deleterious(0.01) probably_damaging(0.921) TCGA-BR-6457-01 12 113704147 113704147 C T TPCN1 Missense_Mutation p.R206W 0.13 deleterious(0) probably_damaging(0.986) TCGA-BR-6457-01 12 21028196 21028196 C A SLCO1B3 Missense_Mutation p.S252Y 0.11 deleterious(0) probably_damaging(0.987) TCGA-BR-6457-01 12 21051412 21051412 G C SLCO1B3 Missense_Mutation p.Q575H 0.12 tolerated(1) benign(0.001) TCGA-BR-6457-01 12 25261031 25261031 A C LRMP 3'UTR 0.12 TCGA-BR-6457-01 12 2558239 2558239 G A CACNA1C Missense_Mutation p.R192H 0.21 deleterious(0.01) probably_damaging(0.996) TCGA-BR-6457-01 12 66725385 66725385 G T HELB Missense_Mutation p.C1041F 0.05 tolerated(0.4) benign(0.15) TCGA-BR-6457-01 12 9231877 9231877 A C A2M Missense_Mutation p.F1028V 0.06 deleterious(0) probably_damaging(0.999) TCGA-BR-6457-01 12 92814941 92814941 G A CLLU1OS Silent p.L51L 0.12 TCGA-BR-6457-01 13 36878722 36878722 G T SPG20 Missense_Mutation p.A594E 0.18 deleterious(0) probably_damaging(0.992) TCGA-BR-6457-01 13 37427777 37427777 C A SMAD9 Missense_Mutation p.A347S 0.21 deleterious(0.04) probably_damaging(0.99) TCGA-BR-6457-01 13 58208453 58208453 C A PCDH17 Missense_Mutation p.D591E 0.15 deleterious(0.01) possibly_damaging(0.876) TCGA-BR-6457-01 13 94938678 94938678 A G GPC6 Missense_Mutation p.K318R 0.20 tolerated(0.51) possibly_damaging(0.599) TCGA-BR-6457-01 14 100765194 100765194 C T SLC25A29 Silent p.P21P 0.14 TCGA-BR-6457-01 14 21560052 21560052 C G ZNF219 Silent p.G468G 0.14 TCGA-BR-6457-01 14 22102378 22102378 G A OR10G2 Silent p.D207D 0.14 TCGA-BR-6457-01 14 22979958 22979958 C A TRAJ31 Missense_Mutation p.N3K 0.36 unknown(0) TCGA-BR-6457-01 14 24601699 24601699 C T FITM1 Silent p.T182T 0.14 TCGA-BR-6457-01 14 37180670 37180670 A C SLC25A21 Silent p.G152G 0.14 TCGA-BR-6457-01 14 45620674 45620674 A G FANCM Silent p.K331K 0.04 TCGA-BR-6457-01 14 73459882 73459882 C T ZFYVE1 Missense_Mutation p.R391Q 0.12 deleterious(0) probably_damaging(0.995) TCGA-BR-6457-01 14 75248531 75248531 C T YLPM1 Silent p.S595S 0.10 TCGA-BR-6457-01 15 102358857 102358857 A C OR4F15 Silent p.S156S 0.03 TCGA-BR-6457-01 15 33855184 33855184 T G RYR3 Silent p.T373T 0.04 TCGA-BR-6457-01 15 40661112 40661112 G A DISP2 Silent p.A933A 0.23 TCGA-BR-6457-01 15 94983411 94983411 T G MCTP2 Missense_Mutation p.L698V 0.05 tolerated(0.7) benign(0.007) TCGA-BR-6457-01 16 24226123 24226123 G A PRKCB Missense_Mutation p.E670K 0.06 tolerated_low_confidence(0.63) benign(0.103) TCGA-BR-6457-01 16 25235898 25235898 G A AQP8 Splice_Site p.X201_splice 0.19 TCGA-BR-6457-01 16 68344764 68344764 A C SLC7A6OS Silent p.A22A 0.21 TCGA-BR-6457-01 16 74487204 74487204 A T GLG1 Missense_Mutation p.L1134H 0.08 deleterious(0) probably_damaging(0.975) TCGA-BR-6457-01 17 40485746 40485746 G A STAT3 Missense_Mutation p.H332Y 0.06 deleterious(0) probably_damaging(0.962) TCGA-BR-6457-01 17 43213915 43213915 A G ACBD4 Missense_Mutation p.Y46C 0.18 deleterious(0) probably_damaging(0.997) TCGA-BR-6457-01 17 72436661 72436661 C A GPRC5C Missense_Mutation p.T294K 0.12 tolerated(0.08) possibly_damaging(0.838) TCGA-BR-6457-01 17 72588200 72588200 G A C17orf77 Silent p.A5A 0.05 TCGA-BR-6457-01 17 7577022 7577022 G A TP53 Nonsense_Mutation p.R306* 0.16 TCGA-BR-6457-01 18 65180695 65180695 G A DSEL Missense_Mutation p.T394I 0.14 deleterious(0) probably_damaging(0.999) TCGA-BR-6457-01 19 17008738 17008738 G A CPAMD8 Missense_Mutation p.S1686L 0.16 tolerated(0.08) benign(0.216) TCGA-BR-6457-01 19 19035507 19035507 C T DDX49 Missense_Mutation p.R310W 0.12 deleterious(0) probably_damaging(1) TCGA-BR-6457-01 19 30502064 30502064 C T URI1 Missense_Mutation p.R367C 0.10 deleterious(0.02) benign(0.117) TCGA-BR-6457-01 19 36515298 36515300 CTT - CLIP3 In_Frame_Del p.K306del 0.19 TCGA-BR-6457-01 19 42343074 42343074 T C LYPD4 Missense_Mutation p.E31G 0.08 tolerated(0.18) probably_damaging(0.997) TCGA-BR-6457-01 19 42471430 42471430 C T ATP1A3 Missense_Mutation p.R1008H 0.08 deleterious(0) probably_damaging(1) TCGA-BR-6457-01 19 43348747 43348747 C A PSG10P RNA 0.10 TCGA-BR-6457-01 19 54803095 54803095 C T LILRA3 Silent p.S194S 0.12 TCGA-BR-6457-01 19 57803627 57803627 T A ZNF460 3'UTR 0.12 TCGA-BR-6457-01 19 9047473 9047473 T G MUC16 Missense_Mutation p.E11386D 0.15 benign(0.007) TCGA-BR-6457-01 1 113058897 113058897 G A WNT2B Missense_Mutation p.R180H 0.15 tolerated(0.17) benign(0.022) TCGA-BR-6457-01 1 152327633 152327633 T A FLG2 Missense_Mutation p.S877C 0.27 unknown(0) TCGA-BR-6457-01 1 155291439 155291439 T G RUSC1 Intron 0.14 TCGA-BR-6457-01 1 22188576 22188576 G A HSPG2 Silent p.C1591C 0.13 TCGA-BR-6457-01 1 228437778 228437778 G A OBSCN Silent p.T1474T 0.11 TCGA-BR-6457-01 1 232581434 232581434 G A SIPA1L2 Missense_Mutation p.T1065M 0.07 tolerated(0.07) possibly_damaging(0.844) TCGA-BR-6457-01 1 236708103 236708103 A T LGALS8 Missense_Mutation p.N273I 0.10 deleterious(0) probably_damaging(0.997) TCGA-BR-6457-01 1 240555838 240555838 A C FMN2 Missense_Mutation p.N1629T 0.09 benign(0.171) TCGA-BR-6457-01 1 24418800 24418800 C T MYOM3 Missense_Mutation p.E366K 0.11 tolerated(0.85) benign(0.004) TCGA-BR-6457-01 1 248457994 248457994 T G OR2T12 Missense_Mutation p.K296T 0.07 tolerated(0.68) possibly_damaging(0.703) TCGA-BR-6457-01 1 248487429 248487429 A G OR2M7 Missense_Mutation p.S148P 0.04 deleterious(0) probably_damaging(0.976) TCGA-BR-6457-01 1 57347266 57347266 T C C8A Missense_Mutation p.Y205H 0.10 deleterious(0.01) probably_damaging(0.984) TCGA-BR-6457-01 1 82302724 82302724 T G LPHN2 Missense_Mutation p.F19V 0.05 tolerated(0.5) benign(0.001) TCGA-BR-6457-01 1 9009386 9009386 G A CA6 Silent p.S48S 0.09 TCGA-BR-6457-01 20 2451403 2451403 C G SNRPB 5'UTR 0.16 TCGA-BR-6457-01 20 2474564 2474564 G A ZNF343 5'UTR 0.20 TCGA-BR-6457-01 20 24954292 24954292 G A APMAP Missense_Mutation p.S137L 0.10 tolerated(0.19) benign(0.004) TCGA-BR-6457-01 20 2774829 2774829 G A CPXM1 3'UTR 0.08 TCGA-BR-6457-01 20 2818920 2818920 C T PCED1A Missense_Mutation p.D267N 0.11 deleterious(0.02) possibly_damaging(0.819) TCGA-BR-6457-01 20 42344707 42344707 C T MYBL2 Missense_Mutation p.R695W 0.11 deleterious(0) probably_damaging(0.972) TCGA-BR-6457-01 20 62126325 62126325 C T EEF1A2 Missense_Mutation p.V152M 0.09 deleterious_low_confidence(0.01) possibly_damaging(0.847) TCGA-BR-6457-01 20 62331793 62331793 G C ARFRP1 3'UTR 0.10 TCGA-BR-6457-01 22 20130417 20130417 G A ZDHHC8 Missense_Mutation p.A422T 0.24 tolerated(0.65) benign(0.015) TCGA-BR-6457-01 2 1652393 1652393 G A PXDN Silent p.Y1053Y 0.22 TCGA-BR-6457-01 2 211465372 211465372 A C CPS1 Missense_Mutation p.Q554P 0.10 deleterious(0.01) possibly_damaging(0.533) TCGA-BR-6457-01 2 225688336 225688336 G T DOCK10 Missense_Mutation p.S1022Y 0.05 deleterious(0) possibly_damaging(0.649) TCGA-BR-6457-01 2 98392446 98392446 G A TMEM131 Missense_Mutation p.P1394S 0.16 tolerated_low_confidence(0.16) benign(0.001) TCGA-BR-6457-01 3 160219842 160219842 A C KPNA4 3'UTR 0.18 TCGA-BR-6457-01 3 48587369 48587369 C T PFKFB4 Missense_Mutation p.R80Q 0.11 probably_damaging(0.992) TCGA-BR-6457-01 3 49139687 49139687 A C QARS Silent p.A194A 0.14 TCGA-BR-6457-01 3 51457862 51457862 T C VPRBP Missense_Mutation p.I425M 0.08 tolerated(0.09) probably_damaging(0.992) TCGA-BR-6457-01 3 63638466 63638466 C T SNTN Missense_Mutation p.P35S 0.25 tolerated(0.12) benign(0.319) TCGA-BR-6457-01 3 93758757 93758757 T G ARL13B Missense_Mutation p.D241E 0.09 tolerated(1) benign(0.001) TCGA-BR-6457-01 4 123252486 123252486 C T KIAA1109 Missense_Mutation p.T3752M 0.21 benign(0.207) TCGA-BR-6457-01 4 126241072 126241072 G A FAT4 Missense_Mutation p.R1169Q 0.07 benign(0.011) TCGA-BR-6457-01 4 146806888 146806888 T C ZNF827 Silent p.A563A 0.07 TCGA-BR-6457-01 4 164246633 164246633 T G NPY1R Missense_Mutation p.N326T 0.07 deleterious(0) probably_damaging(0.992) TCGA-BR-6457-01 4 16587554 16587554 G C LDB2 Missense_Mutation p.N202K 0.15 deleterious(0) probably_damaging(0.998) TCGA-BR-6457-01 4 52926960 52926960 A T SPATA18 Missense_Mutation p.D69V 0.10 tolerated(0.12) possibly_damaging(0.696) TCGA-BR-6457-01 4 55968591 55968591 G T KDR Missense_Mutation p.S691Y 0.07 deleterious(0.04) possibly_damaging(0.493) TCGA-BR-6457-01 4 5733156 5733156 T C EVC Missense_Mutation p.L130P 0.05 deleterious(0) probably_damaging(0.999) TCGA-BR-6457-01 5 110097216 110097216 C G SLC25A46 Missense_Mutation p.L331V 0.08 deleterious(0.05) possibly_damaging(0.746) TCGA-BR-6457-01 5 150275190 150275190 C T ZNF300 Silent p.P553P 0.20 TCGA-BR-6457-01 5 19839105 19839105 A C CDH18 5'UTR 0.12 TCGA-BR-6457-01 5 23522743 23522743 T G PRDM9 Missense_Mutation p.F211V 0.10 deleterious(0) benign(0.246) TCGA-BR-6457-01 5 65288677 65288677 T A ERBB2IP Missense_Mutation p.F44Y 0.06 tolerated(0.28) probably_damaging(0.993) TCGA-BR-6457-01 5 65288678 65288678 T C ERBB2IP Silent p.F44F 0.06 TCGA-BR-6457-01 5 89954028 89954028 G T GPR98 Missense_Mutation p.R1562I 0.09 probably_damaging(0.985) TCGA-BR-6457-01 6 149826767 149826767 T C PPIL4 Missense_Mutation p.K434R 0.08 tolerated(0.35) benign(0.002) TCGA-BR-6457-01 6 161010612 161010612 T C LPA Missense_Mutation p.Q1307R 0.09 tolerated(0.58) benign(0.38) TCGA-BR-6457-01 6 17629488 17629488 A C NUP153 Missense_Mutation p.F981C 0.11 deleterious(0) probably_damaging(0.986) TCGA-BR-6457-01 6 30610778 30610778 C T ATAT1 Missense_Mutation p.R308C 0.10 deleterious(0) probably_damaging(0.954) TCGA-BR-6457-01 6 345906 345906 G A DUSP22 Missense_Mutation p.G81S 0.06 deleterious(0) possibly_damaging(0.585) TCGA-BR-6457-01 7 122765669 122765669 A G SLC13A1 Silent p.L398L 0.09 TCGA-BR-6457-01 7 143657178 143657178 G A OR2F1 Missense_Mutation p.V39M 0.07 tolerated(0.08) benign(0.016) TCGA-BR-6457-01 7 151932911 151932911 T C KMT2C Silent p.V920V 0.07 TCGA-BR-6457-01 7 20685666 20685666 T G ABCB5 Missense_Mutation p.F296V 0.13 tolerated(0.07) benign(0.287) TCGA-BR-6457-01 7 40132537 40132537 A T CDK13 Missense_Mutation p.N1130I 0.12 deleterious(0) possibly_damaging(0.731) TCGA-BR-6457-01 7 42004616 42004616 G T GLI3 Nonsense_Mutation p.S1352* 0.12 TCGA-BR-6457-01 7 44157562 44157562 G A POLD2 Silent p.L108L 0.12 TCGA-BR-6457-01 7 99303075 99303075 T A CYP3A7 3'UTR 0.14 TCGA-BR-6457-01 8 10396212 10396212 C T PRSS55 Missense_Mutation p.P323L 0.55 tolerated(0.48) benign(0) TCGA-BR-6457-01 8 108306233 108306233 A T ANGPT1 Silent p.G323G 0.07 TCGA-BR-6457-01 8 113317004 113317004 C T CSMD3 Missense_Mutation p.E2738K 0.30 tolerated(0.31) possibly_damaging(0.557) TCGA-BR-6457-01 8 113318286 113318286 C A CSMD3 Missense_Mutation p.C2674F 0.05 deleterious(0) probably_damaging(0.992) TCGA-BR-6457-01 8 113323373 113323373 T G CSMD3 Missense_Mutation p.E2573D 0.05 tolerated(0.71) benign(0.009) TCGA-BR-6457-01 8 132052057 132052057 A C ADCY8 Missense_Mutation p.L175V 0.07 tolerated(0.62) possibly_damaging(0.522) TCGA-BR-6457-01 8 13258989 13258989 C T DLC1 Missense_Mutation p.R388Q 0.19 tolerated_low_confidence(0.08) benign(0.048) TCGA-BR-6457-01 8 145661049 145661049 G A TONSL Nonsense_Mutation p.Q923* 0.11 TCGA-BR-6457-01 8 15480646 15480646 T G TUSC3 Missense_Mutation p.F66V 0.12 tolerated(0.17) benign(0.001) TCGA-BR-6457-01 8 40625183 40625183 C A ZMAT4 Missense_Mutation p.A57S 0.07 tolerated(0.74) probably_damaging(0.996) TCGA-BR-6457-01 8 55541424 55541424 C G RP1 Missense_Mutation p.S1661C 0.08 deleterious(0) possibly_damaging(0.864) TCGA-BR-6457-01 8 75944480 75944480 C A CRISPLD1 3'UTR 0.26 TCGA-BR-6457-01 8 87491204 87491204 C T RMDN1 Missense_Mutation p.R226K 0.25 deleterious(0.04) benign(0.378) TCGA-BR-6457-01 8 97614693 97614693 T G SDC2 Missense_Mutation p.S81R 0.05 tolerated(0.12) probably_damaging(0.966) TCGA-BR-6457-01 9 114090513 114090514 AG - OR2K2 Frame_Shift_Del p.S67Ffs*54 0.14 TCGA-BR-6457-01 9 114462251 114462251 C T C9orf84 Missense_Mutation p.E992K 0.13 deleterious(0) possibly_damaging(0.722) TCGA-BR-6457-01 9 116357901 116357901 C T RGS3 Silent p.A1089A 0.06 TCGA-BR-6457-01 9 136596596 136596596 G A SARDH Missense_Mutation p.A174V 0.08 tolerated(0.99) benign(0.006) TCGA-BR-6457-01 9 18657714 18657714 G A ADAMTSL1 Silent p.T304T 0.09 TCGA-BR-6457-01 9 35375189 35375189 C T UNC13B Silent p.D453D 0.14 TCGA-BR-6457-01 9 96030174 96030174 C A WNK2 Missense_Mutation p.S1281R 0.13 unknown(0) TCGA-BR-6457-01 X 77393257 77393257 A T TAF9B Missense_Mutation p.L132I 0.16 tolerated(0.53) benign(0.001) TCGA-BR-6458-01 10 108459101 108459101 T G SORCS1 Missense_Mutation p.Q428H 0.06 deleterious(0.02) benign(0.209) TCGA-BR-6458-01 10 117856235 117856235 A G GFRA1 Missense_Mutation p.S271P 0.17 tolerated(0.53) benign(0.001) TCGA-BR-6458-01 10 120467071 120467071 C A CACUL1 Missense_Mutation p.R209I 0.08 deleterious(0.02) possibly_damaging(0.894) TCGA-BR-6458-01 10 124273733 124273733 T C HTRA1 Missense_Mutation p.I434T 0.19 deleterious(0) probably_damaging(1) TCGA-BR-6458-01 10 125526505 125526505 A G CPXM2 Missense_Mutation p.L488P 0.21 deleterious(0.02) probably_damaging(0.912) TCGA-BR-6458-01 10 26789970 26789970 T A APBB1IP Nonsense_Mutation p.L128* 0.12 TCGA-BR-6458-01 10 29813446 29813446 G A SVIL Silent p.N847N 0.18 TCGA-BR-6458-01 10 31809813 31809813 A C ZEB1 Missense_Mutation p.E518A 0.13 deleterious(0.04) benign(0.441) TCGA-BR-6458-01 10 32560982 32560982 G A EPC1 Silent p.I682I 0.21 TCGA-BR-6458-01 10 33515169 33515169 C T NRP1 Missense_Mutation p.A344T 0.20 deleterious(0) probably_damaging(1) TCGA-BR-6458-01 10 35928827 35928827 G A FZD8 Missense_Mutation p.R511C 0.29 deleterious(0) probably_damaging(0.993) TCGA-BR-6458-01 10 45954591 45954591 T C MARCH8 Missense_Mutation p.E183G 0.20 deleterious(0) probably_damaging(0.996) TCGA-BR-6458-01 10 51465248 51465248 G A AGAP7 Missense_Mutation p.T403M 0.22 tolerated(0.11) benign(0.125) TCGA-BR-6458-01 10 53564348 53564348 T G PRKG1 Missense_Mutation p.L199R 0.11 deleterious(0.03) benign(0.075) TCGA-BR-6458-01 10 62631271 62631271 C T RHOBTB1 Missense_Mutation p.C687Y 0.04 deleterious(0.01) benign(0.282) TCGA-BR-6458-01 10 69672625 69672625 T G SIRT1 Silent p.T584T 0.08 TCGA-BR-6458-01 10 69882022 69882022 G A MYPN Missense_Mutation p.R276Q 0.14 tolerated(0.11) benign(0.084) TCGA-BR-6458-01 10 73082526 73082526 A C SLC29A3 Silent p.S5S 0.06 TCGA-BR-6458-01 10 75607776 75607776 C T CAMK2G Silent p.L222L 0.07 TCGA-BR-6458-01 10 7658034 7658034 A C ITIH5 Missense_Mutation p.F284V 0.13 deleterious(0) probably_damaging(0.985) TCGA-BR-6458-01 10 86001132 86001132 A C LRIT1 Missense_Mutation p.F22V 0.13 tolerated(0.28) benign(0.008) TCGA-BR-6458-01 10 91098757 91098757 T G IFIT3 Missense_Mutation p.I115M 0.39 tolerated(0.28) benign(0.005) TCGA-BR-6458-01 10 99375905 99375905 C A MORN4 3'UTR 0.26 TCGA-BR-6458-01 11 101815057 101815057 C T KIAA1377 Missense_Mutation p.L104F 0.18 deleterious(0) probably_damaging(1) TCGA-BR-6458-01 11 106680788 106680788 T G GUCY1A2 Missense_Mutation p.Q541H 0.14 deleterious(0) probably_damaging(0.987) TCGA-BR-6458-01 11 113698007 113698007 G C USP28 Missense_Mutation p.P379A 0.22 deleterious(0) probably_damaging(0.998) TCGA-BR-6458-01 11 113934741 113934741 A G ZBTB16 Missense_Mutation p.E240G 0.15 deleterious(0.01) benign(0.074) TCGA-BR-6458-01 11 114400955 114400955 T G NXPE1 Missense_Mutation p.T117P 0.15 tolerated(0.28) benign(0.013) TCGA-BR-6458-01 11 122830032 122830032 A C C11orf63 Missense_Mutation p.N739T 0.15 tolerated(0.39) benign(0.023) TCGA-BR-6458-01 11 123755343 123755343 T C TMEM225 Missense_Mutation p.D61G 0.08 tolerated(0.22) benign(0) TCGA-BR-6458-01 11 124766979 124766979 C A ROBO4 Silent p.L83L 0.14 TCGA-BR-6458-01 11 25004695 25004695 A C LUZP2 Missense_Mutation p.K207N 0.13 deleterious(0) probably_damaging(0.994) TCGA-BR-6458-01 11 30930506 30930506 T - DCDC1 Frame_Shift_Del p.N1302Tfs*28 0.09 TCGA-BR-6458-01 11 43425686 43425686 G A TTC17 Missense_Mutation p.A491T 0.13 tolerated(0.59) benign(0.014) TCGA-BR-6458-01 11 46831385 46831385 T C CKAP5 Missense_Mutation p.S224G 0.09 tolerated(0.44) benign(0) TCGA-BR-6458-01 11 4928674 4928674 T G OR51A7 Missense_Mutation p.I25M 0.14 deleterious(0.03) benign(0.333) TCGA-BR-6458-01 11 49598071 49598071 G C RP11-707M1.1 RNA 0.19 TCGA-BR-6458-01 11 51412114 51412114 A C OR4A5 Silent p.G94G 0.17 TCGA-BR-6458-01 11 55579495 55579495 T G OR5L1 Missense_Mutation p.L185V 0.18 tolerated(0.1) probably_damaging(0.933) TCGA-BR-6458-01 11 56043468 56043468 T G OR5T1 Silent p.T118T 0.17 TCGA-BR-6458-01 11 56058069 56058069 A C OR8H1 Missense_Mutation p.V157G 0.15 deleterious(0.01) benign(0.073) TCGA-BR-6458-01 11 58189836 58189836 T C OR5B2 Missense_Mutation p.K300R 0.14 tolerated_low_confidence(0.25) benign(0.008) TCGA-BR-6458-01 11 58605731 58605731 T C GLYATL2 Intron 0.12 TCGA-BR-6458-01 11 58962713 58962713 C T DTX4 Silent p.T469T 0.24 TCGA-BR-6458-01 11 61017153 61017153 C T PGA5 Silent p.N262N 0.16 TCGA-BR-6458-01 11 64119683 64119683 C T CCDC88B Missense_Mutation p.R1061W 0.31 deleterious(0.02) probably_damaging(0.999) TCGA-BR-6458-01 11 64893044 64893044 G - MRPL49 Frame_Shift_Del p.Q106Rfs*2 0.27 TCGA-BR-6458-01 11 86519692 86519692 T G PRSS23 Missense_Mutation p.I336S 0.17 deleterious(0) probably_damaging(0.947) TCGA-BR-6458-01 11 88780736 88780736 G A GRM5 Missense_Mutation p.S102L 0.22 deleterious(0) possibly_damaging(0.857) TCGA-BR-6458-01 11 93170867 93170867 A C CCDC67 Missense_Mutation p.K599N 0.14 deleterious(0.01) probably_damaging(0.922) TCGA-BR-6458-01 11 99827733 99827733 G A CNTN5 Missense_Mutation p.R290H 0.09 deleterious(0) possibly_damaging(0.63) TCGA-BR-6458-01 12 10149597 10149597 C T CLEC1B Missense_Mutation p.G96S 0.30 tolerated(0.78) benign(0.004) TCGA-BR-6458-01 12 112471065 112471065 A G NAA25 Missense_Mutation p.L923P 0.17 deleterious(0.05) probably_damaging(0.999) TCGA-BR-6458-01 12 124414973 124414973 G A DNAH10 Missense_Mutation p.D4095N 0.24 probably_damaging(0.999) TCGA-BR-6458-01 12 21918624 21918624 T G KCNJ8 3'UTR 0.15 TCGA-BR-6458-01 12 3131176 3131176 A C TEAD4 Missense_Mutation p.K297T 0.16 deleterious(0.01) probably_damaging(1) TCGA-BR-6458-01 12 38714574 38714574 G A ALG10B Silent p.L327L 0.15 TCGA-BR-6458-01 12 39233729 39233729 A T CPNE8 Missense_Mutation p.L107I 0.17 tolerated(0.08) probably_damaging(0.999) TCGA-BR-6458-01 12 43840490 43840490 T G ADAMTS20 Missense_Mutation p.N702T 0.18 deleterious(0) probably_damaging(0.999) TCGA-BR-6458-01 12 46231101 46231101 C A ARID2 Intron 0.13 TCGA-BR-6458-01 12 50616015 50616015 C T LIMA1 Missense_Mutation p.G140D 0.29 tolerated(0.21) benign(0.001) TCGA-BR-6458-01 12 54108389 54108389 T A CALCOCO1 Missense_Mutation p.E492V 0.14 deleterious(0) probably_damaging(1) TCGA-BR-6458-01 12 55042133 55042133 T G DCD 5'UTR 0.16 TCGA-BR-6458-01 12 55356615 55356615 G A TESPA1 Missense_Mutation p.S356F 0.32 deleterious_low_confidence(0.04) benign(0.048) TCGA-BR-6458-01 12 56421645 56421645 C G IKZF4 Missense_Mutation p.S210C 0.23 deleterious(0) probably_damaging(0.998) TCGA-BR-6458-01 12 57351340 57351340 G A RDH16 5'UTR 0.17 TCGA-BR-6458-01 12 73056901 73056901 G A TRHDE Missense_Mutation p.E1001K 0.11 tolerated(1) benign(0.037) TCGA-BR-6458-01 12 76784288 76784288 C T OSBPL8 Missense_Mutation p.R360K 0.18 tolerated(0.97) benign(0.178) TCGA-BR-6458-01 12 78444768 78444768 G A NAV3 Missense_Mutation p.R786H 0.13 deleterious(0) probably_damaging(0.92) TCGA-BR-6458-01 12 78573437 78573437 T G NAV3 Missense_Mutation p.I1809S 0.16 deleterious(0) probably_damaging(0.999) TCGA-BR-6458-01 12 80752108 80752108 T A OTOGL Missense_Mutation p.C2025S 0.33 deleterious(0.02) benign(0.088) TCGA-BR-6458-01 12 81719631 81719631 T G PPFIA2 Missense_Mutation p.E856A 0.13 deleterious(0.02) benign(0.181) TCGA-BR-6458-01 12 9004872 9004872 A C A2ML1 Missense_Mutation p.S844R 0.10 tolerated(0.18) benign(0.078) TCGA-BR-6458-01 12 93131228 93131228 A C PLEKHG7 5'UTR 0.09 TCGA-BR-6458-01 12 95566467 95566467 G C FGD6 Missense_Mutation p.S832C 0.13 deleterious(0) probably_damaging(0.954) TCGA-BR-6458-01 12 9995000 9995000 T G KLRF1 Silent p.T186T 0.27 TCGA-BR-6458-01 13 102051504 102051504 A G NALCN 5'UTR 0.11 TCGA-BR-6458-01 13 109859011 109859011 T G MYO16 Missense_Mutation p.L1802V 0.14 deleterious_low_confidence(0) possibly_damaging(0.687) TCGA-BR-6458-01 13 23908520 23908520 A C SACS Silent p.T3165T 0.14 TCGA-BR-6458-01 13 25285781 25285781 T C ATP12A 3'UTR 0.36 TCGA-BR-6458-01 13 25399903 25399903 A C RNF17 Missense_Mutation p.K746N 0.21 deleterious(0.01) probably_damaging(0.987) TCGA-BR-6458-01 13 32527262 32527262 T G EEF1DP3 RNA 0.10 TCGA-BR-6458-01 13 36888405 36888405 T G SPG20 Missense_Mutation p.K481T 0.14 deleterious(0) probably_damaging(0.985) TCGA-BR-6458-01 13 92560224 92560224 A C GPC5 Missense_Mutation p.K438N 0.16 deleterious(0) probably_damaging(0.925) TCGA-BR-6458-01 14 107283202 107283202 A C IGHV7-81 Missense_Mutation p.F9V 0.20 deleterious(0.03) benign(0.194) TCGA-BR-6458-01 14 20825689 20825689 C T PARP2 Intron 0.19 TCGA-BR-6458-01 14 21859686 21859686 C T CHD8 Missense_Mutation p.R2334Q 0.23 deleterious(0.01) possibly_damaging(0.553) TCGA-BR-6458-01 14 38311465 38311465 T G TTC6 Missense_Mutation p.L1877R 0.11 deleterious(0) probably_damaging(1) TCGA-BR-6458-01 14 45711613 45711614 CT - MIS18BP1 Frame_Shift_Del p.S256Yfs*6 0.13 TCGA-BR-6458-01 14 58063439 58063439 T G SLC35F4 Silent p.T59T 0.20 TCGA-BR-6458-01 14 59112838 59112838 G C DACT1 Missense_Mutation p.E499D 0.16 tolerated(0.24) benign(0.034) TCGA-BR-6458-01 14 61789032 61789033 - T PRKCH Frame_Shift_Ins p.C73Lfs*3 0.34 TCGA-BR-6458-01 14 63416924 63416924 G A KCNH5 Silent p.T432T 0.28 TCGA-BR-6458-01 14 88707082 88707082 G A KCNK10 Missense_Mutation p.A162V 0.21 deleterious(0) possibly_damaging(0.778) TCGA-BR-6458-01 14 96777946 96777946 C T ATG2B Missense_Mutation p.R1308H 0.13 tolerated(0.13) benign(0.028) TCGA-BR-6458-01 15 100649236 100649236 G A ADAMTS17 Silent p.C658C 0.25 TCGA-BR-6458-01 15 25467520 25467520 T C SNORD115-28 RNA 0.18 TCGA-BR-6458-01 15 38805039 38805039 C T RASGRP1 Missense_Mutation p.R265H 0.14 deleterious(0) probably_damaging(0.997) TCGA-BR-6458-01 15 43924471 43924471 A T CATSPER2 Missense_Mutation p.L496H 0.10 deleterious(0) probably_damaging(0.998) TCGA-BR-6458-01 15 48062707 48062707 A C SEMA6D Missense_Mutation p.E649D 0.13 tolerated(0.25) benign(0.014) TCGA-BR-6458-01 15 50189600 50189601 - CCATGAACA ATP8B4 In_Frame_Ins p.V860_G862dup 0.07 TCGA-BR-6458-01 15 58913755 58913755 T C ADAM10 Missense_Mutation p.S476G 0.36 tolerated(0.09) benign(0.038) TCGA-BR-6458-01 15 60297500 60297500 A C FOXB1 Missense_Mutation p.K113T 0.11 tolerated(0.11) benign(0.001) TCGA-BR-6458-01 15 69327747 69327747 A C NOX5 Missense_Mutation p.Q303H 0.11 tolerated(0.3) benign(0.012) TCGA-BR-6458-01 15 74572359 74572359 T C CCDC33 Missense_Mutation p.F272S 0.20 deleterious(0.02) possibly_damaging(0.82) TCGA-BR-6458-01 15 83499800 83499800 A G WHAMM Silent p.P697P 0.14 TCGA-BR-6458-01 15 89391183 89391183 A C ACAN Missense_Mutation p.K549T 0.12 deleterious(0.02) unknown(0) TCGA-BR-6458-01 16 19603148 19603148 T G C16orf62 Missense_Mutation p.F315V 0.21 deleterious(0) probably_damaging(0.998) TCGA-BR-6458-01 16 19883494 19883494 T C GPRC5B Missense_Mutation p.K225R 0.21 tolerated(0.61) probably_damaging(0.998) TCGA-BR-6458-01 16 2106669 2106669 G A TSC2 Missense_Mutation p.V225M 0.22 deleterious(0) probably_damaging(0.998) TCGA-BR-6458-01 16 23678440 23678440 A C DCTN5 Missense_Mutation p.K175T 0.16 tolerated(0.22) benign(0.003) TCGA-BR-6458-01 16 29897033 29897033 C T SEZ6L2 Missense_Mutation p.V416M 0.40 tolerated(0.1) benign(0.207) TCGA-BR-6458-01 16 3406818 3406818 G A OR2C1 Missense_Mutation p.R293Q 0.35 deleterious(0) probably_damaging(0.996) TCGA-BR-6458-01 16 75602021 75602021 G A GABARAPL2 Silent p.Q59Q 0.19 TCGA-BR-6458-01 17 10428647 10428647 G A MYH2 Missense_Mutation p.T1519M 0.22 deleterious(0.01) probably_damaging(0.989) TCGA-BR-6458-01 17 28417521 28417521 C T EFCAB5 Missense_Mutation p.R1256C 0.20 deleterious(0) probably_damaging(1) TCGA-BR-6458-01 17 32647919 32647919 A C CCL8 Missense_Mutation p.K98T 0.30 deleterious(0.02) possibly_damaging(0.738) TCGA-BR-6458-01 17 36508871 36508871 G T SOCS7 Silent p.L248L 0.13 TCGA-BR-6458-01 17 49043540 49043540 T G SPAG9 3'UTR 0.15 TCGA-BR-6458-01 17 66898948 66898948 A C ABCA8 Missense_Mutation p.S850R 0.18 tolerated(0.15) benign(0.258) TCGA-BR-6458-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.62 tolerated(0.13) possibly_damaging(0.631) TCGA-BR-6458-01 17 7684068 7684068 C T DNAH2 Missense_Mutation p.R1991C 0.29 probably_damaging(0.992) TCGA-BR-6458-01 18 33706542 33706542 T G SLC39A6 Missense_Mutation p.K143N 0.23 tolerated(0.24) possibly_damaging(0.907) TCGA-BR-6458-01 18 58039273 58039273 T C MC4R Missense_Mutation p.I104V 0.05 tolerated(0.07) benign(0.048) TCGA-BR-6458-01 18 63481784 63481784 G C CDH7 Missense_Mutation p.R190T 0.24 deleterious(0) probably_damaging(0.993) TCGA-BR-6458-01 18 8783803 8783803 G A SOGA2 Silent p.E231E 0.19 TCGA-BR-6458-01 19 10221753 10221753 G C PPAN Intron 0.09 TCGA-BR-6458-01 19 12969369 12969369 C T MAST1 Silent p.R394R 0.16 TCGA-BR-6458-01 19 13051267 13051267 G A CALR Splice_Site p.X234_splice 0.29 TCGA-BR-6458-01 19 14991857 14991857 A T OR7A17 Missense_Mutation p.F104Y 0.20 tolerated_low_confidence(0.08) benign(0.018) TCGA-BR-6458-01 19 21992308 21992308 T A ZNF43 Missense_Mutation p.K177N 0.19 tolerated(0.42) possibly_damaging(0.665) TCGA-BR-6458-01 19 22951153 22951153 T C ZNF99 Silent p.K60K 0.21 TCGA-BR-6458-01 19 31769734 31769734 T A TSHZ3 Missense_Mutation p.K322M 0.09 deleterious(0) possibly_damaging(0.905) TCGA-BR-6458-01 19 36218419 36218419 C T KMT2B Missense_Mutation p.R1400C 0.14 probably_damaging(0.973) TCGA-BR-6458-01 19 41307126 41307126 G A EGLN2 Missense_Mutation p.G217R 0.34 deleterious(0) probably_damaging(0.999) TCGA-BR-6458-01 19 43570731 43570731 A G PSG2 Missense_Mutation p.L329P 0.13 deleterious(0.03) benign(0.107) TCGA-BR-6458-01 19 44377328 44377328 C A ZNF404 Missense_Mutation p.K346N 0.12 deleterious(0.01) probably_damaging(0.919) TCGA-BR-6458-01 19 44891483 44891483 T G ZNF285 Missense_Mutation p.K308N 0.12 tolerated(0.12) benign(0.028) TCGA-BR-6458-01 19 47192802 47192802 T C PRKD2 Missense_Mutation p.I655V 0.36 tolerated(0.63) benign(0.16) TCGA-BR-6458-01 19 47259669 47259669 C T FKRP Missense_Mutation p.A321V 0.23 deleterious(0.02) probably_damaging(0.994) TCGA-BR-6458-01 19 47542709 47542709 T C NPAS1 Silent p.L283L 0.16 TCGA-BR-6458-01 19 52448445 52448445 T G ZNF613 Missense_Mutation p.F437V 0.12 deleterious(0) probably_damaging(0.998) TCGA-BR-6458-01 19 54849465 54849465 C T LILRA4 Missense_Mutation p.V133M 0.14 deleterious(0.02) probably_damaging(0.998) TCGA-BR-6458-01 19 55880255 55880255 G A IL11 Missense_Mutation p.A21V 0.31 deleterious(0.02) unknown(0) TCGA-BR-6458-01 19 57724376 57724376 T G ZNF264 3'UTR 0.28 TCGA-BR-6458-01 19 9058990 9058990 T G MUC16 Missense_Mutation p.T9486P 0.16 unknown(0) TCGA-BR-6458-01 19 9271459 9271459 C T ZNF317 Missense_Mutation p.H380Y 0.38 deleterious(0) probably_damaging(0.999) TCGA-BR-6458-01 1 144866714 144866714 A C PDE4DIP Missense_Mutation p.L1843R 0.04 deleterious(0) probably_damaging(0.951) TCGA-BR-6458-01 1 156640713 156640713 G C NES Silent p.A1089A 0.16 TCGA-BR-6458-01 1 158619716 158619716 A - SPTA1 Frame_Shift_Del p.S1167Lfs*73 0.39 TCGA-BR-6458-01 1 158815416 158815416 A C MNDA Silent p.R204R 0.06 TCGA-BR-6458-01 1 159778997 159778997 T G FCRL6 Missense_Mutation p.V189G 0.13 deleterious(0) possibly_damaging(0.553) TCGA-BR-6458-01 1 16719932 16719932 G C SZRD1 Missense_Mutation p.G104A 0.14 deleterious(0) probably_damaging(0.999) TCGA-BR-6458-01 1 182025473 182025473 T C ZNF648 Missense_Mutation p.K558R 0.17 tolerated(0.07) possibly_damaging(0.761) TCGA-BR-6458-01 1 19440436 19440436 T C UBR4 Intron 0.25 TCGA-BR-6458-01 1 197404424 197404424 A C CRB1 Missense_Mutation p.N1144T 0.21 tolerated(0.52) benign(0.186) TCGA-BR-6458-01 1 203045504 203045504 G A PPFIA4 Missense_Mutation p.A698T 0.17 deleterious_low_confidence(0) possibly_damaging(0.652) TCGA-BR-6458-01 1 203702357 203702357 G A ATP2B4 Intron 0.14 TCGA-BR-6458-01 1 206972263 206972263 G A IL19 Silent p.P8P 0.14 TCGA-BR-6458-01 1 209849270 209849270 C A G0S2 Missense_Mutation p.Q81K 0.16 tolerated(0.57) benign(0.016) TCGA-BR-6458-01 1 214169849 214169849 T G PROX1 5'UTR 0.08 TCGA-BR-6458-01 1 218607431 218607431 A C TGFB2 Missense_Mutation p.K201T 0.30 tolerated(0.11) benign(0.05) TCGA-BR-6458-01 1 222794619 222794619 A T MIA3 Missense_Mutation p.E84D 0.31 deleterious(0) probably_damaging(0.984) TCGA-BR-6458-01 1 228447429 228447429 A T OBSCN Missense_Mutation p.S1697C 0.05 benign(0.001) TCGA-BR-6458-01 1 228462138 228462138 C T OBSCN Silent p.T2267T 0.48 TCGA-BR-6458-01 1 228548384 228548384 C T OBSCN Intron 0.40 TCGA-BR-6458-01 1 233512225 233512225 A C MLK4 Missense_Mutation p.K626Q 0.11 deleterious(0) possibly_damaging(0.905) TCGA-BR-6458-01 1 246707908 246707908 A T TFB2M Missense_Mutation p.L312I 0.20 deleterious(0.02) probably_damaging(1) TCGA-BR-6458-01 1 247614782 247614782 A T OR2B11 Missense_Mutation p.V168E 0.10 deleterious(0) possibly_damaging(0.864) TCGA-BR-6458-01 1 248551780 248551780 A G OR2T6 Missense_Mutation p.S291G 0.42 deleterious(0) probably_damaging(0.968) TCGA-BR-6458-01 1 34238265 34238265 T G CSMD2 Missense_Mutation p.K544T 0.21 tolerated(0.71) benign(0.001) TCGA-BR-6458-01 1 36559058 36559058 G A ADPRHL2 3'UTR 0.52 TCGA-BR-6458-01 1 39341098 39341098 A C GJA9 Missense_Mutation p.L225V 0.08 deleterious(0) probably_damaging(0.997) TCGA-BR-6458-01 1 40704945 40704945 A C RLF Missense_Mutation p.K1524T 0.10 deleterious(0.02) possibly_damaging(0.856) TCGA-BR-6458-01 1 40705056 40705056 A C RLF Missense_Mutation p.K1561T 0.09 tolerated(0.48) benign(0.244) TCGA-BR-6458-01 1 86590762 86590762 G A COL24A1 Silent p.N419N 0.18 TCGA-BR-6458-01 1 89657186 89657186 T C GBP4 Missense_Mutation p.K225R 0.21 tolerated(0.39) benign(0.008) TCGA-BR-6458-01 1 93705450 93705450 T G CCDC18 Missense_Mutation p.L1046R 0.22 deleterious(0) probably_damaging(0.97) TCGA-BR-6458-01 20 11898885 11898885 T G BTBD3 5'UTR 0.09 TCGA-BR-6458-01 20 25459831 25459831 G A NINL Silent p.Y643Y 0.12 TCGA-BR-6458-01 20 2845684 2845684 A C VPS16 Missense_Mutation p.N663H 0.11 deleterious(0.01) probably_damaging(0.965) TCGA-BR-6458-01 20 31386384 31386384 C T DNMT3B Missense_Mutation p.R537W 0.23 tolerated(0.05) benign(0) TCGA-BR-6458-01 20 31601629 31601629 C T BPIFB2 Silent p.L108L 0.07 TCGA-BR-6458-01 20 37357171 37357171 A C SLC32A1 Missense_Mutation p.Q489H 0.09 tolerated(0.31) benign(0.008) TCGA-BR-6458-01 20 44685864 44685864 G A SLC12A5 Missense_Mutation p.V1084M 0.08 deleterious(0.03) possibly_damaging(0.576) TCGA-BR-6458-01 20 47851592 47851592 A C DDX27 Missense_Mutation p.N496T 0.13 deleterious(0.01) probably_damaging(0.917) TCGA-BR-6458-01 20 49620993 49620993 G A KCNG1 Silent p.R375R 0.30 TCGA-BR-6458-01 20 50406871 50406871 C T SALL4 Silent p.S717S 0.29 TCGA-BR-6458-01 20 58448927 58448927 G A SYCP2 Missense_Mutation p.P1180L 0.15 tolerated(0.54) benign(0.024) TCGA-BR-6458-01 20 61910326 61910326 C T ARFGAP1 Silent p.N202N 0.28 TCGA-BR-6458-01 20 7920962 7920962 A G HAO1 Silent p.T36T 0.13 TCGA-BR-6458-01 21 27121347 27121347 C A GABPA Missense_Mutation p.L75M 0.15 deleterious(0) probably_damaging(0.955) TCGA-BR-6458-01 21 32554938 32554938 A G TIAM1 Missense_Mutation p.L896P 0.09 deleterious(0) probably_damaging(0.958) TCGA-BR-6458-01 22 26110408 26110408 T G ADRBK2 Missense_Mutation p.F509V 0.24 deleterious(0) probably_damaging(1) TCGA-BR-6458-01 22 27024279 27024279 T G CRYBA4 Missense_Mutation p.F110V 0.17 deleterious(0) possibly_damaging(0.51) TCGA-BR-6458-01 22 39772142 39772142 C T SYNGR1 Silent p.N141N 0.19 TCGA-BR-6458-01 22 44062988 44062988 T G EFCAB6 Missense_Mutation p.K660T 0.27 deleterious(0.01) possibly_damaging(0.501) TCGA-BR-6458-01 2 100203726 100203726 G A AFF3 Silent p.D852D 0.09 TCGA-BR-6458-01 2 102992432 102992432 A C IL18R1 Missense_Mutation p.E178D 0.11 tolerated(0.09) benign(0.438) TCGA-BR-6458-01 2 113820164 113820164 A G IL36RN Silent p.E126E 0.12 TCGA-BR-6458-01 2 1271134 1271134 C T SNTG2 Intron 0.40 TCGA-BR-6458-01 2 145157299 145157299 C G ZEB2 Missense_Mutation p.K485N 0.15 tolerated(0.19) probably_damaging(0.928) TCGA-BR-6458-01 2 145157311 145157311 T C ZEB2 Silent p.E481E 0.19 TCGA-BR-6458-01 2 152470950 152470950 T A NEB Missense_Mutation p.K3814M 0.23 probably_damaging(0.955) TCGA-BR-6458-01 2 155295112 155295112 T G GALNT13 Silent p.S468S 0.21 TCGA-BR-6458-01 2 163693107 163693107 C A KCNH7 Missense_Mutation p.A83S 0.24 tolerated(0.05) possibly_damaging(0.592) TCGA-BR-6458-01 2 1647273 1647273 G T PXDN Silent p.I1273I 0.12 TCGA-BR-6458-01 2 170557595 170557595 T G PHOSPHO2 Silent p.S38S 0.15 TCGA-BR-6458-01 2 176983956 176983956 T G HOXD10 Silent p.S340S 0.40 TCGA-BR-6458-01 2 179642418 179642418 T G TTN Intron 0.15 TCGA-BR-6458-01 2 187521058 187521058 G A ITGAV Missense_Mutation p.S550N 0.19 tolerated(0.36) benign(0.284) TCGA-BR-6458-01 2 18765460 18765460 T C NT5C1B Missense_Mutation p.D322G 0.18 deleterious(0.01) benign(0.416) TCGA-BR-6458-01 2 191301390 191301390 T G MFSD6 Missense_Mutation p.V212G 0.15 tolerated(0.51) benign(0.001) TCGA-BR-6458-01 2 202489002 202489002 C G TMEM237 Missense_Mutation p.E401D 0.20 tolerated(1) benign(0.002) TCGA-BR-6458-01 2 207527659 207527659 A G DYTN Missense_Mutation p.L534P 0.22 deleterious(0) probably_damaging(0.959) TCGA-BR-6458-01 2 21256384 21256384 T C APOB Missense_Mutation p.K304R 0.15 benign(0.026) TCGA-BR-6458-01 2 218925211 218925211 G C CXCR2P1 RNA 0.12 TCGA-BR-6458-01 2 226446694 226446694 C T NYAP2 Silent p.S187S 0.04 TCGA-BR-6458-01 2 238283329 238283329 C G COL6A3 Silent p.L1135L 0.10 TCGA-BR-6458-01 2 241969917 241969917 T G SNED1 Missense_Mutation p.F144V 0.13 deleterious(0.02) probably_damaging(0.998) TCGA-BR-6458-01 2 24507636 24507636 A C ITSN2 Missense_Mutation p.L647R 0.23 tolerated(0.09) unknown(0) TCGA-BR-6458-01 2 3691528 3691528 C T COLEC11 Silent p.G226G 0.29 TCGA-BR-6458-01 2 37483980 37483980 T G PRKD3 Missense_Mutation p.E746D 0.22 deleterious(0) probably_damaging(0.997) TCGA-BR-6458-01 2 49190889 49190889 T C FSHR Silent p.E357E 0.22 TCGA-BR-6458-01 2 71192185 71192185 C T ATP6V1B1 Silent p.A492A 0.14 TCGA-BR-6458-01 2 73835667 73835667 A C ALMS1 Missense_Mutation p.K4142T 0.25 possibly_damaging(0.861) TCGA-BR-6458-01 2 99013210 99013210 A C CNGA3 Missense_Mutation p.K526T 0.08 deleterious(0) possibly_damaging(0.491) TCGA-BR-6458-01 2 99439852 99439852 G A KIAA1211L Missense_Mutation p.P295L 0.31 tolerated(0.3) possibly_damaging(0.851) TCGA-BR-6458-01 3 100523678 100523678 G A ABI3BP Missense_Mutation p.P569S 0.15 deleterious(0.02) probably_damaging(0.968) TCGA-BR-6458-01 3 111799962 111799962 T C TMPRSS7 3'UTR 0.13 TCGA-BR-6458-01 3 119205779 119205779 A C POGLUT1 Missense_Mutation p.K246N 0.16 deleterious(0.05) possibly_damaging(0.516) TCGA-BR-6458-01 3 120352085 120352085 C A HGD Missense_Mutation p.S366I 0.12 deleterious(0.01) probably_damaging(0.949) TCGA-BR-6458-01 3 126736735 126736735 G A PLXNA1 Silent p.T1220T 0.31 TCGA-BR-6458-01 3 133379947 133379947 A C TOPBP1 Missense_Mutation p.F9V 0.43 deleterious(0.02) benign(0.101) TCGA-BR-6458-01 3 13655628 13655628 C T FBLN2 Missense_Mutation p.R565C 0.20 deleterious(0) probably_damaging(0.944) TCGA-BR-6458-01 3 142567080 142567080 C T PCOLCE2 Missense_Mutation p.A143T 0.11 deleterious(0.05) benign(0.135) TCGA-BR-6458-01 3 17279755 17279755 A G TBC1D5 Silent p.P496P 0.15 TCGA-BR-6458-01 3 179132727 179132727 A T GNB4 Missense_Mutation p.L126I 0.16 tolerated(0.18) benign(0.129) TCGA-BR-6458-01 3 190366162 190366162 A C IL1RAP Intron 0.16 TCGA-BR-6458-01 3 195300808 195300808 G T APOD Missense_Mutation p.P53Q 0.12 deleterious(0) probably_damaging(1) TCGA-BR-6458-01 3 195495955 195495955 G A MUC4 Silent p.S4489S 0.57 TCGA-BR-6458-01 3 42916035 42916035 T G CYP8B1 Missense_Mutation p.K425T 0.24 tolerated(0.05) probably_damaging(0.999) TCGA-BR-6458-01 3 50153411 50153411 G A RBM5 Missense_Mutation p.E698K 0.21 deleterious(0.02) probably_damaging(0.931) TCGA-BR-6458-01 3 55504415 55504415 T C WNT5A Missense_Mutation p.K283R 0.23 tolerated(0.52) benign(0.029) TCGA-BR-6458-01 3 69097029 69097042 CTCGAGCTCGCTGA - TMF1 Frame_Shift_Del p.S272Tfs*27 0.17 TCGA-BR-6458-01 3 86996151 86996151 T G VGLL3 3'UTR 0.31 TCGA-BR-6458-01 3 93699229 93699229 C T ARL13B 5'UTR 0.24 TCGA-BR-6458-01 3 97705706 97705706 T C GABRR3 Missense_Mutation p.R409G 0.51 tolerated(0.44) benign(0) TCGA-BR-6458-01 3 97806150 97806150 T G OR5AC2 Missense_Mutation p.L45R 0.17 deleterious(0) probably_damaging(0.933) TCGA-BR-6458-01 3 98216669 98216669 A C OR5K2 Missense_Mutation p.I49L 0.16 deleterious(0.01) benign(0.216) TCGA-BR-6458-01 4 119163259 119163259 A C NDST3 Missense_Mutation p.K785T 0.16 tolerated(0.1) probably_damaging(0.996) TCGA-BR-6458-01 4 123332388 123332388 G A ADAD1 Missense_Mutation p.R287K 0.17 tolerated(0.07) probably_damaging(0.999) TCGA-BR-6458-01 4 126389829 126389829 A T FAT4 Missense_Mutation p.D4021V 0.22 probably_damaging(1) TCGA-BR-6458-01 4 126411383 126411383 T A FAT4 Missense_Mutation p.L4469H 0.19 probably_damaging(0.935) TCGA-BR-6458-01 4 155287504 155287504 C T DCHS2 Silent p.T184T 0.23 TCGA-BR-6458-01 4 155670290 155670290 T G LRAT 3'UTR 0.17 TCGA-BR-6458-01 4 158254090 158254090 A G GRIA2 Silent p.P334P 0.13 TCGA-BR-6458-01 4 25030161 25030161 T G LGI2 Silent p.R79R 0.16 TCGA-BR-6458-01 4 38830380 38830380 T C TLR6 Missense_Mutation p.I239V 0.20 tolerated(0.53) benign(0.001) TCGA-BR-6458-01 4 40115104 40115104 A C N4BP2 Missense_Mutation p.K547T 0.18 deleterious(0) benign(0.134) TCGA-BR-6458-01 4 42583692 42583692 T A ATP8A1 Silent p.T260T 0.14 TCGA-BR-6458-01 4 5018891 5018891 A T CYTL1 Missense_Mutation p.Y57N 0.08 tolerated(0.15) possibly_damaging(0.72) TCGA-BR-6458-01 4 70513235 70513235 A C UGT2A1 Missense_Mutation p.L43R 0.19 deleterious(0) probably_damaging(1) TCGA-BR-6458-01 4 88766376 88766376 A C MEPE Missense_Mutation p.K119T 0.24 deleterious(0.03) benign(0.167) TCGA-BR-6458-01 4 89950685 89950685 A C FAM13A Missense_Mutation p.L48R 0.21 deleterious(0) probably_damaging(0.999) TCGA-BR-6458-01 4 98902359 98902359 A T STPG2 Silent p.G241G 0.18 TCGA-BR-6458-01 4 99823081 99823081 G C EIF4E Missense_Mutation p.S24C 0.24 deleterious(0.01) possibly_damaging(0.885) TCGA-BR-6458-01 5 101631706 101631706 A C SLCO4C1 Silent p.S87S 0.23 TCGA-BR-6458-01 5 10465070 10465087 AATACATTTTAATGTCAA - ROPN1L 3'UTR 0.19 TCGA-BR-6458-01 5 110835553 110835553 T C STARD4 3'UTR 0.09 TCGA-BR-6458-01 5 11364952 11364952 A C CTNND2 Missense_Mutation p.L410V 0.16 deleterious(0.03) benign(0.027) TCGA-BR-6458-01 5 113822854 113822854 A C KCNN2 Missense_Mutation p.K454N 0.17 deleterious(0) possibly_damaging(0.902) TCGA-BR-6458-01 5 131307262 131307262 C T ACSL6 Missense_Mutation p.R472Q 0.26 deleterious(0) benign(0.126) TCGA-BR-6458-01 5 13729648 13729648 T G DNAH5 Missense_Mutation p.K3928T 0.12 possibly_damaging(0.728) TCGA-BR-6458-01 5 13751364 13751364 T G DNAH5 Missense_Mutation p.K3678N 0.28 possibly_damaging(0.728) TCGA-BR-6458-01 5 140209285 140209285 G A PCDHA6 Missense_Mutation p.A537T 0.21 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-BR-6458-01 5 140222313 140222313 G A PCDHA8 Silent p.P469P 0.29 TCGA-BR-6458-01 5 140589755 140589755 T A PCDHB12 Missense_Mutation p.L426M 0.18 tolerated_low_confidence(0.31) benign(0.305) TCGA-BR-6458-01 5 140741903 140741903 A C PCDHGB2 Missense_Mutation p.K734T 0.17 tolerated(0.15) benign(0.089) TCGA-BR-6458-01 5 143853664 143853664 A C KCTD16 Missense_Mutation p.K425T 0.12 deleterious(0) probably_damaging(0.994) TCGA-BR-6458-01 5 148424152 148424152 A G SH3TC2 Missense_Mutation p.L110P 0.16 deleterious(0) probably_damaging(0.928) TCGA-BR-6458-01 5 153149735 153149735 A C GRIA1 Missense_Mutation p.K687T 0.19 tolerated(0.09) probably_damaging(0.999) TCGA-BR-6458-01 5 156649893 156649893 A C ITK Missense_Mutation p.E172D 0.13 tolerated(0.51) benign(0.002) TCGA-BR-6458-01 5 168671766 168671766 T C SLIT3 Missense_Mutation p.N95S 0.20 deleterious(0) probably_damaging(0.992) TCGA-BR-6458-01 5 34915867 34915867 G A BRIX1 Silent p.R8R 0.43 TCGA-BR-6458-01 5 35727819 35727819 A G SPEF2 Missense_Mutation p.K986R 0.18 deleterious(0.05) benign(0.028) TCGA-BR-6458-01 5 35814620 35814620 A C SPEF2 Silent p.R1812R 0.15 TCGA-BR-6458-01 5 53752045 53752045 A C HSPB3 Missense_Mutation p.E142D 0.16 deleterious(0.01) probably_damaging(0.931) TCGA-BR-6458-01 5 80390141 80390141 C A RASGRF2 Missense_Mutation p.D526E 0.09 tolerated(0.62) benign(0.001) TCGA-BR-6458-01 6 111685110 111685110 A C REV3L Silent p.T2275T 0.12 TCGA-BR-6458-01 6 117130660 117130660 T G GPRC6A Missense_Mutation p.E105D 0.15 tolerated(0.87) benign(0.014) TCGA-BR-6458-01 6 118635300 118635300 G A SLC35F1 Missense_Mutation p.R371H 0.10 deleterious(0.04) benign(0.125) TCGA-BR-6458-01 6 127834069 127834069 T C SOGA3 Silent p.Q484Q 0.11 TCGA-BR-6458-01 6 144768817 144768817 T G UTRN Missense_Mutation p.L601R 0.13 deleterious(0.01) possibly_damaging(0.555) TCGA-BR-6458-01 6 144801062 144801062 C T UTRN Missense_Mutation p.R1151W 0.32 deleterious(0) probably_damaging(0.958) TCGA-BR-6458-01 6 144832238 144832238 A C UTRN Missense_Mutation p.E1641D 0.19 deleterious(0.03) benign(0.162) TCGA-BR-6458-01 6 146125620 146125620 T A FBXO30 Missense_Mutation p.K641M 0.29 deleterious(0.01) possibly_damaging(0.696) TCGA-BR-6458-01 6 146875785 146875785 A C RAB32 3'UTR 0.15 TCGA-BR-6458-01 6 152590341 152590341 T C SYNE1 Silent p.Q6218Q 0.30 TCGA-BR-6458-01 6 153332885 153332885 A T RGS17 Missense_Mutation p.S153T 0.17 deleterious(0) possibly_damaging(0.456) TCGA-BR-6458-01 6 166571913 166571913 G T T Missense_Mutation p.L400M 0.20 tolerated(0.34) benign(0.013) TCGA-BR-6458-01 6 32156083 32156083 A C PBX2 Missense_Mutation p.L165R 0.24 deleterious(0) probably_damaging(1) TCGA-BR-6458-01 6 33282726 33282726 G A ZBTB22 3'UTR 0.20 TCGA-BR-6458-01 6 41766457 41766457 C T USP49 Silent p.A627A 0.18 TCGA-BR-6458-01 6 42690053 42690053 T G PRPH2 Missense_Mutation p.K7T 0.20 tolerated(0.19) benign(0.105) TCGA-BR-6458-01 6 45514961 45514961 C T RUNX2 Silent p.D495D 0.19 TCGA-BR-6458-01 6 51612651 51612651 A G PKHD1 Missense_Mutation p.W3255R 0.14 tolerated(0.36) benign(0.147) TCGA-BR-6458-01 6 55406891 55406891 T G HMGCLL1 Missense_Mutation p.E82D 0.14 deleterious(0.01) probably_damaging(0.992) TCGA-BR-6458-01 6 55659183 55659183 A C BMP5 Silent p.A242A 0.10 TCGA-BR-6458-01 6 57013172 57013172 G A ZNF451 Silent p.Q763Q 0.12 TCGA-BR-6458-01 6 75844528 75844528 A C COL12A1 Missense_Mutation p.L1813R 0.17 probably_damaging(0.999) TCGA-BR-6458-01 7 103294587 103294587 T G RELN Silent p.R503R 0.16 TCGA-BR-6458-01 7 106793689 106793689 T C PRKAR2B Missense_Mutation p.I304T 0.13 deleterious(0) probably_damaging(0.991) TCGA-BR-6458-01 7 107732089 107732089 G T LAMB4 Silent p.L561L 0.22 TCGA-BR-6458-01 7 122635486 122635486 A C TAS2R16 Missense_Mutation p.F68C 0.23 deleterious(0.04) benign(0.277) TCGA-BR-6458-01 7 143792445 143792445 C A OR2A12 Missense_Mutation p.A82E 0.51 tolerated(0.36) benign(0.009) TCGA-BR-6458-01 7 147092834 147092834 C T CNTNAP2 Silent p.F544F 0.19 TCGA-BR-6458-01 7 20698710 20698710 T C ABCB5 Intron 0.10 TCGA-BR-6458-01 7 21603831 21603831 T G DNAH11 Missense_Mutation p.L337R 0.14 benign(0.162) TCGA-BR-6458-01 7 21630894 21630894 T G DNAH11 Missense_Mutation p.L789R 0.10 probably_damaging(0.991) TCGA-BR-6458-01 7 27224672 27224672 G A HOXA11 Missense_Mutation p.P31L 0.10 deleterious(0) probably_damaging(0.993) TCGA-BR-6458-01 7 27224674 27224674 G A HOXA11 Silent p.L30L 0.10 TCGA-BR-6458-01 7 45078002 45078002 G A CCM2 Missense_Mutation p.D82N 0.04 deleterious(0) probably_damaging(0.999) TCGA-BR-6458-01 7 65705411 65705411 A C TPST1 5'UTR 0.10 TCGA-BR-6458-01 7 69364348 69364348 T G AUTS2 Missense_Mutation p.L129R 0.15 deleterious(0.03) probably_damaging(0.991) TCGA-BR-6458-01 7 70886007 70886007 A G WBSCR17 Missense_Mutation p.H293R 0.08 deleterious(0.04) possibly_damaging(0.582) TCGA-BR-6458-01 7 70886090 70886090 A G WBSCR17 Missense_Mutation p.R321G 0.11 deleterious(0) possibly_damaging(0.5) TCGA-BR-6458-01 7 82387807 82387807 T G PCLO 3'UTR 0.08 TCGA-BR-6458-01 7 82387919 82387919 A G PCLO Missense_Mutation p.L5134P 0.06 unknown(0) TCGA-BR-6458-01 7 82545548 82545548 T C PCLO Silent p.Q3918Q 0.06 TCGA-BR-6458-01 7 82545671 82545671 T G PCLO Missense_Mutation p.Q3877H 0.06 unknown(0) TCGA-BR-6458-01 7 88424064 88424064 C T C7orf62 Missense_Mutation p.V65I 0.09 tolerated(1) benign(0.004) TCGA-BR-6458-01 7 92355004 92355004 T A CDK6 Missense_Mutation p.Q158L 0.02 tolerated(0.08) benign(0.044) TCGA-BR-6458-01 7 92765299 92765299 T G SAMD9L 5'UTR 0.03 TCGA-BR-6458-01 7 99217362 99217362 T G ZSCAN25 Missense_Mutation p.F45V 0.14 deleterious(0) probably_damaging(0.992) TCGA-BR-6458-01 7 99796118 99796118 C T STAG3 Missense_Mutation p.T422M 0.14 deleterious(0.01) possibly_damaging(0.841) TCGA-BR-6458-01 8 10465425 10465425 T G RP1L1 Missense_Mutation p.E2061D 0.02 unknown(0) TCGA-BR-6458-01 8 104898096 104898096 T G RIMS2 Silent p.S423S 0.23 TCGA-BR-6458-01 8 106813816 106813816 T G ZFPM2 Silent p.S502S 0.15 TCGA-BR-6458-01 8 107718983 107718983 A C OXR1 Missense_Mutation p.T413P 0.17 tolerated(0.16) benign(0.003) TCGA-BR-6458-01 8 11994773 11994773 G A USP17L2 Silent p.S499S 0.03 TCGA-BR-6458-01 8 121823876 121823876 T G SNTB1 Silent p.R70R 0.24 TCGA-BR-6458-01 8 12946131 12946131 A G DLC1 Missense_Mutation p.L1386P 0.93 deleterious(0.01) probably_damaging(0.926) TCGA-BR-6458-01 8 133953600 133953600 A C TG Missense_Mutation p.Q1682H 0.13 tolerated(0.26) benign(0.006) TCGA-BR-6458-01 8 133961049 133961049 A C TG Silent p.S1754S 0.10 TCGA-BR-6458-01 8 144991805 144991805 G T PLEC Missense_Mutation p.P4199T 0.13 probably_damaging(1) TCGA-BR-6458-01 8 144997653 144997653 C T PLEC Silent p.R2285R 0.13 TCGA-BR-6458-01 8 145135310 145135310 G C EXOSC4 Missense_Mutation p.G182R 0.06 deleterious(0.02) possibly_damaging(0.498) TCGA-BR-6458-01 8 146068570 146068570 T C ZNF7 3'UTR 0.14 TCGA-BR-6458-01 8 16921715 16921715 T C MICU3 Silent p.F168F 0.11 TCGA-BR-6458-01 8 19813350 19813350 A G LPL Splice_Site p.X259_splice 0.22 TCGA-BR-6458-01 8 21562635 21562635 A C GFRA2 Missense_Mutation p.F303V 0.20 tolerated(0.14) possibly_damaging(0.526) TCGA-BR-6458-01 8 22428560 22428560 C T SORBS3 Silent p.D523D 0.25 TCGA-BR-6458-01 8 22865402 22865402 G A RHOBTB2 Intron 0.17 TCGA-BR-6458-01 8 28385541 28385541 G A FZD3 Missense_Mutation p.G422S 0.19 deleterious(0) probably_damaging(0.93) TCGA-BR-6458-01 8 28385645 28385645 A C FZD3 Missense_Mutation p.E456D 0.21 tolerated(1) benign(0.038) TCGA-BR-6458-01 8 37697060 37697060 T G GPR124 Missense_Mutation p.L811V 0.17 deleterious(0.03) possibly_damaging(0.521) TCGA-BR-6458-01 8 52321900 52321900 G A PXDNL Missense_Mutation p.R762C 0.24 deleterious(0.01) possibly_damaging(0.806) TCGA-BR-6458-01 8 69012014 69012014 A C PREX2 Missense_Mutation p.K884T 0.08 deleterious(0.01) benign(0.031) TCGA-BR-6458-01 8 99961704 99961704 A C OSR2 Missense_Mutation p.K175T 0.12 deleterious(0.02) probably_damaging(0.992) TCGA-BR-6458-01 9 101818614 101818614 T G COL15A1 Missense_Mutation p.F1089V 0.22 deleterious(0.04) benign(0.133) TCGA-BR-6458-01 9 103002501 103002501 C A INVS Missense_Mutation p.L259M 0.12 deleterious(0) probably_damaging(1) TCGA-BR-6458-01 9 104390538 104390538 T C GRIN3A Missense_Mutation p.K833R 0.12 tolerated(0.12) possibly_damaging(0.882) TCGA-BR-6458-01 9 116185755 116185755 G A C9orf43 Silent p.A211A 0.22 TCGA-BR-6458-01 9 119461292 119461292 C T TRIM32 Missense_Mutation p.A424V 0.16 tolerated(0.06) probably_damaging(0.994) TCGA-BR-6458-01 9 125315533 125315533 T C OR1N2 Missense_Mutation p.F29L 0.12 deleterious(0) probably_damaging(0.97) TCGA-BR-6458-01 9 129981048 129981048 A G RALGPS1 Silent p.%3D 0.15 TCGA-BR-6458-01 9 137713968 137713968 T G COL5A1 Missense_Mutation p.I1527S 0.15 unknown(0) TCGA-BR-6458-01 9 139273391 139273391 G C SNAPC4 Missense_Mutation p.P963R 0.54 deleterious(0.04) benign(0.185) TCGA-BR-6458-01 9 15779060 15779060 C T CCDC171 Missense_Mutation p.T998I 0.23 deleterious(0.01) possibly_damaging(0.686) TCGA-BR-6458-01 9 34256919 34256919 T - KIF24 Frame_Shift_Del p.R896Gfs*4 0.20 TCGA-BR-6458-01 9 73205969 73205969 T G TRPM3 Missense_Mutation p.E1055D 0.17 deleterious(0) probably_damaging(0.938) TCGA-BR-6458-01 X 101098171 101098171 T G NXF5 5'UTR 0.18 TCGA-BR-6458-01 X 108684663 108684663 T G GUCY2F Missense_Mutation p.S540R 0.22 deleterious(0.05) benign(0.003) TCGA-BR-6458-01 X 111155770 111155770 T G TRPC5 Missense_Mutation p.I217L 0.17 tolerated(0.26) possibly_damaging(0.604) TCGA-BR-6458-01 X 144906221 144906221 G C SLITRK2 Missense_Mutation p.A760P 0.08 tolerated(0.15) benign(0.005) TCGA-BR-6458-01 X 150840247 150840247 A C PASD1 Missense_Mutation p.N478T 0.21 tolerated(0.57) benign(0.012) TCGA-BR-6458-01 X 153629051 153629051 C T RPL10 Silent p.I167I 0.31 TCGA-BR-6458-01 X 30260841 30260841 A C MAGEB4 Silent p.R197R 0.29 TCGA-BR-6458-01 X 34148536 34148536 A G FAM47A Silent p.A620A 0.27 TCGA-BR-6458-01 X 55289738 55289738 T G PAGE3 Missense_Mutation p.S47R 0.14 tolerated(0.13) benign(0.03) TCGA-BR-6458-01 X 72095143 72095143 C A DMRTC1 Silent p.L29L 0.11 TCGA-BR-6458-01 X 92964511 92964511 A C FAM133A Missense_Mutation p.Q31H 0.12 deleterious_low_confidence(0.03) probably_damaging(0.998) TCGA-BR-6458-01 X 99662240 99662240 G T PCDH19 Missense_Mutation p.H452Q 0.10 deleterious(0.02) benign(0.339) TCGA-BR-6563-01 10 12866468 12866468 G C CAMK1D Missense_Mutation p.A280P 0.06 deleterious(0.03) possibly_damaging(0.818) TCGA-BR-6563-01 10 26241113 26241113 A C MYO3A Missense_Mutation p.E25A 0.11 deleterious(0) probably_damaging(0.995) TCGA-BR-6563-01 10 75487057 75487057 C T RP11-464F9.1 RNA 0.08 TCGA-BR-6563-01 10 99196244 99196244 G C EXOSC1 Missense_Mutation p.F182L 0.08 tolerated(0.7) benign(0.002) TCGA-BR-6563-01 11 114273598 114273598 A G RBM7 Missense_Mutation p.H103R 0.10 tolerated(0.21) benign(0.007) TCGA-BR-6563-01 11 120168982 120168982 C T POU2F3 Silent p.T49T 0.07 TCGA-BR-6563-01 11 4976844 4976844 A G OR51A2 Missense_Mutation p.C34R 0.07 deleterious(0) possibly_damaging(0.754) TCGA-BR-6563-01 11 5269648 5269648 C T HBG1 Missense_Mutation p.A129T 0.10 deleterious(0.01) possibly_damaging(0.671) TCGA-BR-6563-01 11 6898750 6898750 A G OR10A4 Missense_Mutation p.Y291C 0.08 deleterious(0) probably_damaging(0.977) TCGA-BR-6563-01 12 10163368 10163368 G T CLEC12B Nonsense_Mutation p.E4* 0.10 TCGA-BR-6563-01 12 109286789 109286789 C T DAO Missense_Mutation p.R162W 0.08 deleterious(0) benign(0.163) TCGA-BR-6563-01 12 112140003 112140003 A G ACAD10 Missense_Mutation p.I75M 0.11 deleterious(0) possibly_damaging(0.604) TCGA-BR-6563-01 12 133501996 133501996 G A ZNF605 Missense_Mutation p.S661L 0.18 tolerated(0.1) benign(0.025) TCGA-BR-6563-01 12 56489547 56489547 T A ERBB3 Missense_Mutation p.I671N 0.20 deleterious(0) probably_damaging(0.999) TCGA-BR-6563-01 12 57323335 57323335 C T SDR9C7 Missense_Mutation p.R188H 0.23 deleterious(0.02) benign(0.209) TCGA-BR-6563-01 13 70314635 70314635 T C KLHL1 Missense_Mutation p.S565G 0.10 deleterious(0) probably_damaging(0.996) TCGA-BR-6563-01 14 36143463 36143463 A C RALGAPA1 Missense_Mutation p.S1108A 0.07 deleterious(0) probably_damaging(0.99) TCGA-BR-6563-01 14 93118183 93118183 G A RIN3 Silent p.P263P 0.10 TCGA-BR-6563-01 15 74239441 74239441 C T LOXL1 Silent p.Y461Y 0.13 TCGA-BR-6563-01 15 90611201 90611201 G A ZNF710 Missense_Mutation p.V278M 0.07 deleterious(0) probably_damaging(0.988) TCGA-BR-6563-01 16 2284270 2284270 C T E4F1 Missense_Mutation p.R492C 0.06 deleterious(0) probably_damaging(0.999) TCGA-BR-6563-01 16 29828032 29828032 C T PAGR1 Silent p.S62S 0.17 TCGA-BR-6563-01 16 70428945 70428945 G A ST3GAL2 Missense_Mutation p.S158L 0.09 probably_damaging(0.996) TCGA-BR-6563-01 17 1559814 1559814 G A PRPF8 Missense_Mutation p.L1889F 0.07 tolerated(0.05) probably_damaging(0.987) TCGA-BR-6563-01 17 38904587 38904587 C T KRT25 Missense_Mutation p.R432H 0.09 tolerated(0.53) benign(0.014) TCGA-BR-6563-01 17 44109659 44109659 G T KANSL1 Nonsense_Mutation p.Y948* 0.05 TCGA-BR-6563-01 18 39637994 39637994 C T PIK3C3 Missense_Mutation p.T804M 0.06 deleterious(0) probably_damaging(1) TCGA-BR-6563-01 18 44579393 44579393 A G KATNAL2 Missense_Mutation p.I17V 0.07 tolerated(0.09) benign(0.007) TCGA-BR-6563-01 19 14031623 14031623 G A CC2D1A Missense_Mutation p.R510Q 0.08 tolerated(0.74) benign(0.087) TCGA-BR-6563-01 19 15083565 15083565 A G SLC1A6 Missense_Mutation p.L53P 0.11 deleterious(0) probably_damaging(0.993) TCGA-BR-6563-01 19 22155029 22155029 T A ZNF208 Missense_Mutation p.K936M 0.09 tolerated(0.06) unknown(0) TCGA-BR-6563-01 19 53269036 53269036 C A ZNF600 Missense_Mutation p.R658I 0.06 tolerated(0.13) benign(0.001) TCGA-BR-6563-01 19 56369635 56369635 G T NLRP4 Silent p.T292T 0.08 TCGA-BR-6563-01 19 9071751 9071751 T G MUC16 Missense_Mutation p.K5232T 0.06 unknown(0) TCGA-BR-6563-01 1 12091805 12091805 G A MIIP Silent p.P369P 0.06 TCGA-BR-6563-01 1 13001215 13001215 C A PRAMEF6 Missense_Mutation p.K156N 0.03 tolerated(0.15) possibly_damaging(0.65) TCGA-BR-6563-01 1 152275780 152275780 G A FLG Missense_Mutation p.S3861F 0.06 unknown(0) TCGA-BR-6563-01 1 152283700 152283700 C T FLG Missense_Mutation p.R1221H 0.12 possibly_damaging(0.522) TCGA-BR-6563-01 1 161599656 161599656 G A FCGR3B Silent p.D113D 0.16 TCGA-BR-6563-01 1 205039136 205039136 G A CNTN2 Missense_Mutation p.R793H 0.06 tolerated(0.08) benign(0.013) TCGA-BR-6563-01 1 228399542 228399542 G A OBSCN Missense_Mutation p.V20M 0.25 benign(0.382) TCGA-BR-6563-01 20 10023849 10023849 C T ANKEF1 Silent p.V142V 0.10 TCGA-BR-6563-01 20 15913947 15913947 A C MACROD2 Missense_Mutation p.S268R 0.08 tolerated(0.06) benign(0.079) TCGA-BR-6563-01 20 25457205 25457205 G A NINL Missense_Mutation p.R908C 0.14 tolerated(0.24) benign(0.12) TCGA-BR-6563-01 20 31598877 31598877 G C BPIFB2 Missense_Mutation p.V53L 0.04 tolerated(0.24) benign(0.032) TCGA-BR-6563-01 20 47262400 47262400 G A PREX1 Silent p.R1167R 0.09 TCGA-BR-6563-01 20 60503377 60503377 C T CDH4 Missense_Mutation p.T634M 0.11 deleterious(0) probably_damaging(0.975) TCGA-BR-6563-01 20 61945434 61945434 C T COL20A1 Missense_Mutation p.P790L 0.15 deleterious(0.04) probably_damaging(0.959) TCGA-BR-6563-01 21 19666657 19666657 C T TMPRSS15 Missense_Mutation p.G806S 0.05 tolerated(0.42) benign(0.271) TCGA-BR-6563-01 22 29121096 29121096 T C CHEK2 Missense_Mutation p.N197S 0.13 tolerated(0.2) benign(0.202) TCGA-BR-6563-01 2 121712927 121712927 G A GLI2 Silent p.A188A 0.11 TCGA-BR-6563-01 2 198950136 198950136 T G PLCL1 Missense_Mutation p.V632G 0.12 deleterious(0.04) probably_damaging(0.999) TCGA-BR-6563-01 2 21229930 21229930 G A APOB Silent p.F3270F 0.09 TCGA-BR-6563-01 2 37289090 37289090 A T HEATR5B Missense_Mutation p.M563K 0.10 deleterious(0) possibly_damaging(0.823) TCGA-BR-6563-01 3 29938904 29938904 C T RBMS3 Missense_Mutation p.R276C 0.13 deleterious(0.01) probably_damaging(0.998) TCGA-BR-6563-01 3 30713544 30713546 AGA - TGFBR2 In_Frame_Del p.K316del 0.09 TCGA-BR-6563-01 3 49405969 49405969 A C RHOA Missense_Mutation p.L57V 0.12 deleterious(0.02) probably_damaging(0.995) TCGA-BR-6563-01 4 126412194 126412194 A C FAT4 Missense_Mutation p.Q4739H 0.08 possibly_damaging(0.545) TCGA-BR-6563-01 4 162307467 162307467 C T FSTL5 Missense_Mutation p.G659D 0.05 deleterious(0) probably_damaging(0.996) TCGA-BR-6563-01 4 186423407 186423407 G A PDLIM3 3'UTR 0.08 TCGA-BR-6563-01 4 3769558 3769558 C T ADRA2C Missense_Mutation p.R409C 0.10 deleterious(0.04) probably_damaging(0.971) TCGA-BR-6563-01 4 65188509 65188509 G A TECRL Silent p.G111G 0.09 TCGA-BR-6563-01 5 112174605 112174605 G A APC Missense_Mutation p.R1105Q 0.19 probably_damaging(0.997) TCGA-BR-6563-01 5 118533559 118533559 T A DMXL1 Nonsense_Mutation p.Y2551* 0.10 TCGA-BR-6563-01 5 140261955 140261955 C T PCDHA13 Silent p.S34S 0.08 TCGA-BR-6563-01 5 19473323 19473323 A C CDH18 3'UTR 0.06 TCGA-BR-6563-01 5 37201824 37201824 G A C5orf42 Missense_Mutation p.L1126F 0.09 deleterious(0) probably_damaging(0.988) TCGA-BR-6563-01 6 127471624 127471624 A C RSPO3 Missense_Mutation p.K115Q 0.05 tolerated(0.09) possibly_damaging(0.893) TCGA-BR-6563-01 6 158516672 158516672 T G SYNJ2 Missense_Mutation p.F1256C 0.09 tolerated_low_confidence(0.14) benign(0.002) TCGA-BR-6563-01 6 170068234 170068234 G A WDR27 Silent p.R168R 0.12 TCGA-BR-6563-01 6 66200566 66200566 T C EYS Silent p.Q261Q 0.14 TCGA-BR-6563-01 6 93956675 93956675 C T EPHA7 Missense_Mutation p.R854H 0.13 deleterious(0.01) probably_damaging(0.994) TCGA-BR-6563-01 7 70853293 70853293 G T WBSCR17 Silent p.L165L 0.09 TCGA-BR-6563-01 8 116632246 116632246 T C TRPS1 Missense_Mutation p.S27G 0.06 tolerated_low_confidence(0.07) possibly_damaging(0.547) TCGA-BR-6563-01 8 1497743 1497743 C T DLGAP2 Missense_Mutation p.T295M 0.21 tolerated(0.08) probably_damaging(0.999) TCGA-BR-6563-01 8 41577290 41577290 G A ANK1 Silent p.D365D 0.07 TCGA-BR-6563-01 8 53852963 53852963 G A NPBWR1 Missense_Mutation p.V166I 0.17 deleterious(0.04) benign(0.103) TCGA-BR-6563-01 9 125797424 125797424 G A GPR21 Silent p.L193L 0.06 TCGA-BR-6563-01 9 136199499 136199499 G A SURF6 Missense_Mutation p.A164V 0.08 tolerated(0.37) possibly_damaging(0.798) TCGA-BR-6563-01 X 142717006 142717006 A T SLITRK4 Missense_Mutation p.V640D 0.12 deleterious(0) possibly_damaging(0.832) TCGA-BR-6563-01 X 151336800 151336800 C A GABRA3 Missense_Mutation p.R460L 0.14 deleterious(0) probably_damaging(1) TCGA-BR-6563-01 X 19045346 19045346 C A GPR64 Missense_Mutation p.S154I 0.24 tolerated_low_confidence(0.07) possibly_damaging(0.62) TCGA-BR-6563-01 X 41043383 41043383 T C USP9X Splice_Site p.X1093_splice 0.17 TCGA-BR-6563-01 X 54472781 54472781 G A FGD1 Missense_Mutation p.R883W 0.17 deleterious(0.03) probably_damaging(0.949) TCGA-BR-6563-01 X 73960013 73960013 T G KIAA2022 Missense_Mutation p.E1460A 0.12 deleterious(0) probably_damaging(0.923) TCGA-BR-6563-01 X 77529240 77529240 C T CYSLTR1 Missense_Mutation p.D2N 0.23 tolerated(0.55) benign(0.002) TCGA-BR-6563-01 X 79698243 79698243 A C FAM46D Missense_Mutation p.S69R 0.22 deleterious(0) probably_damaging(1) TCGA-BR-6564-01 10 117061471 117061471 G A ATRNL1 Silent p.T912T 0.18 TCGA-BR-6564-01 11 19077900 19077900 C T MRGPRX2 Missense_Mutation p.G17E 0.11 tolerated(0.29) benign(0.034) TCGA-BR-6564-01 11 35006231 35006231 G C PDHX Missense_Mutation p.D380H 0.08 deleterious(0.01) probably_damaging(0.938) TCGA-BR-6564-01 11 72288493 72288493 C T PDE2A Missense_Mutation p.E921K 0.08 deleterious_low_confidence(0.01) benign(0.409) TCGA-BR-6564-01 12 122967235 122967235 G A ZCCHC8 Missense_Mutation p.P227S 0.19 tolerated(0.4) benign(0.054) TCGA-BR-6564-01 12 47172329 47172329 A G SLC38A4 Silent p.H316H 0.09 TCGA-BR-6564-01 12 8242546 8242546 A T NECAP1 Missense_Mutation p.K37I 0.10 deleterious(0) possibly_damaging(0.833) TCGA-BR-6564-01 16 3367328 3367328 T G ZNF75A Missense_Mutation p.F117C 0.13 tolerated(0.12) benign(0) TCGA-BR-6564-01 16 50258847 50258847 T C PAPD5 Silent p.Y503Y 0.13 TCGA-BR-6564-01 17 12903546 12903546 C T ELAC2 Silent p.A450A 0.16 TCGA-BR-6564-01 17 16701628 16701628 C T CCDC144A 3'UTR 0.08 TCGA-BR-6564-01 17 18874692 18874692 G A FAM83G Missense_Mutation p.R818W 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.781) TCGA-BR-6564-01 17 46669686 46669687 - A HOXB5 Frame_Shift_Ins p.C232Lfs*106 0.09 TCGA-BR-6564-01 18 48591918 48591929 CGCTTTTGTTTG - SMAD4 In_Frame_Del p.R361_L364del 0.13 TCGA-BR-6564-01 19 17104353 17104353 G A CPAMD8 Missense_Mutation p.T427M 0.09 tolerated(0.08) benign(0.143) TCGA-BR-6564-01 19 19626290 19626290 C T TSSK6 5'UTR 0.14 TCGA-BR-6564-01 19 48836573 48836573 A G TMEM143 Missense_Mutation p.M428T 0.20 tolerated_low_confidence(0.14) possibly_damaging(0.599) TCGA-BR-6564-01 19 5456633 5456633 G A ZNRF4 Silent p.P377P 0.12 TCGA-BR-6564-01 19 6417055 6417055 G C KHSRP Silent p.P375P 0.10 TCGA-BR-6564-01 19 6697719 6697719 C T C3 Missense_Mutation p.E843K 0.10 deleterious(0) probably_damaging(1) TCGA-BR-6564-01 1 11861224 11861224 G A MTHFR Missense_Mutation p.R157W 0.08 deleterious(0) probably_damaging(0.999) TCGA-BR-6564-01 1 152283625 152283625 C A FLG Missense_Mutation p.S1246I 0.06 possibly_damaging(0.727) TCGA-BR-6564-01 1 155160774 155160774 G T MUC1 Missense_Mutation p.S251R 0.08 deleterious(0.03) possibly_damaging(0.483) TCGA-BR-6564-01 1 158735950 158735950 G C OR6N1 Missense_Mutation p.Q175E 0.04 tolerated(0.91) benign(0.012) TCGA-BR-6564-01 1 75602794 75602794 G A LHX8 Missense_Mutation p.E39K 0.12 tolerated(0.39) benign(0.011) TCGA-BR-6564-01 20 61598542 61598542 C A SLC17A9 Intron 0.28 TCGA-BR-6564-01 2 103130667 103130668 - A SLC9A4 Frame_Shift_Ins p.T561Dfs*27 0.10 TCGA-BR-6564-01 2 107049684 107049684 C T RGPD3 Missense_Mutation p.E755K 0.05 tolerated(0.11) benign(0.012) TCGA-BR-6564-01 2 204045127 204045127 T - NBEAL1 Frame_Shift_Del p.F2134Sfs*49 0.11 TCGA-BR-6564-01 3 137983022 137983022 C T ARMC8 Nonsense_Mutation p.Q409* 0.13 TCGA-BR-6564-01 3 71008435 71008436 TC - FOXP1 Frame_Shift_Del p.D668Lfs*4 0.10 TCGA-BR-6564-01 5 137485477 137485477 G A BRD8 Nonsense_Mutation p.Q1044* 0.08 TCGA-BR-6564-01 5 56234714 56234714 T A MIER3 Missense_Mutation p.D104V 0.11 deleterious(0) probably_damaging(0.938) TCGA-BR-6564-01 6 34508912 34508912 C T SPDEF Nonsense_Mutation p.W161* 0.29 TCGA-BR-6564-01 7 105752714 105752714 G C SYPL1 Intron 0.12 TCGA-BR-6564-01 8 143425714 143425714 G T TSNARE1 Silent p.R120R 0.15 TCGA-BR-6564-01 X 103349655 103349655 A T SLC25A53 Missense_Mutation p.F96I 0.12 deleterious(0) probably_damaging(1) TCGA-BR-6564-01 X 112035177 112035177 C T AMOT Silent p.V603V 0.07 TCGA-BR-6564-01 X 117810670 117810670 G T DOCK11 Missense_Mutation p.E1810D 0.08 tolerated(0.83) benign(0) TCGA-BR-6564-01 X 12735849 12735849 G A FRMPD4 Silent p.S968S 0.14 TCGA-BR-6564-01 X 13753462 13753462 C T OFD1 Silent p.L36L 0.09 TCGA-BR-6564-01 X 152939512 152939512 C A PNCK Missense_Mutation p.S40I 0.13 deleterious_low_confidence(0.01) benign(0.032) TCGA-BR-6564-01 X 24228401 24228401 G A ZFX Silent p.R442R 0.12 TCGA-BR-6564-01 X 48761971 48761971 C A SLC35A2 Intron 0.14 TCGA-BR-6564-01 X 70357076 70357076 C A MED12 Missense_Mutation p.P1864Q 0.11 benign(0.049) TCGA-BR-6564-01 X 73524180 73524180 C T ZCCHC13 Nonsense_Mutation p.R27* 0.09 TCGA-BR-6565-01 10 106982932 106982932 C G SORCS3 Silent p.V931V 0.03 TCGA-BR-6565-01 10 18827202 18827202 C T CACNB2 Missense_Mutation p.P466S 0.10 deleterious(0.01) benign(0.075) TCGA-BR-6565-01 10 21461326 21461326 C A NEBL-AS1 5'Flank 0.11 TCGA-BR-6565-01 10 21461327 21461327 T A NEBL-AS1 5'Flank 0.10 TCGA-BR-6565-01 10 402365 402365 C A DIP2C Splice_Site p.X995_splice 0.06 TCGA-BR-6565-01 10 47087071 47087071 G A NPY4R Silent p.P96P 0.08 TCGA-BR-6565-01 10 50121975 50121975 G A LRRC18 Missense_Mutation p.R76W 0.12 deleterious(0.01) probably_damaging(0.93) TCGA-BR-6565-01 10 5494816 5494816 T C NET1 Intron 0.11 TCGA-BR-6565-01 10 74906052 74906052 G C ECD Nonsense_Mutation p.S370* 0.19 TCGA-BR-6565-01 10 75185821 75185821 C T MSS51 Missense_Mutation p.V273M 0.19 tolerated(0.05) possibly_damaging(0.708) TCGA-BR-6565-01 11 103027275 103027275 G A DYNC2H1 Silent p.Q1301Q 0.07 TCGA-BR-6565-01 11 108383768 108383768 G A EXPH5 Silent p.F822F 0.04 TCGA-BR-6565-01 11 128807499 128807499 C G TP53AIP1 Intron 0.13 TCGA-BR-6565-01 11 32635062 32635062 C G CCDC73 Missense_Mutation p.E934D 0.21 deleterious(0.03) probably_damaging(0.93) TCGA-BR-6565-01 11 56258070 56258070 G A OR5M8 Silent p.L259L 0.18 TCGA-BR-6565-01 11 57244117 57244117 C T RTN4RL2 Silent p.Y332Y 0.33 TCGA-BR-6565-01 11 598413 598413 C T PHRF1 Missense_Mutation p.A312V 0.14 deleterious(0.04) benign(0.017) TCGA-BR-6565-01 11 607264 607264 A G PHRF1 Missense_Mutation p.D602G 0.29 tolerated(0.17) benign(0.205) TCGA-BR-6565-01 11 63449014 63449014 C T RTN3 5'UTR 0.20 TCGA-BR-6565-01 11 65827302 65827302 A T SF3B2 Missense_Mutation p.D484V 0.15 deleterious(0) probably_damaging(0.946) TCGA-BR-6565-01 11 67816583 67816583 C T TCIRG1 Missense_Mutation p.T570M 0.18 deleterious(0) possibly_damaging(0.882) TCGA-BR-6565-01 11 7111351 7111351 G A RBMXL2 Missense_Mutation p.D334N 0.09 tolerated(0.11) benign(0) TCGA-BR-6565-01 11 77412169 77412169 T C RSF1 Missense_Mutation p.Q702R 0.05 tolerated(0.24) benign(0.101) TCGA-BR-6565-01 11 9048919 9048919 C T SCUBE2 Missense_Mutation p.R841Q 0.23 deleterious(0.04) probably_damaging(0.999) TCGA-BR-6565-01 12 101684666 101684666 A G UTP20 Silent p.Q297Q 0.15 TCGA-BR-6565-01 12 110232195 110232195 G T TRPV4 Missense_Mutation p.S477Y 0.15 tolerated(1) probably_damaging(0.943) TCGA-BR-6565-01 12 1943618 1943618 G C LRTM2 Missense_Mutation p.G282R 0.26 tolerated(0.16) possibly_damaging(0.748) TCGA-BR-6565-01 12 29596410 29596410 G C OVCH1 Missense_Mutation p.P1014R 0.06 deleterious(0) possibly_damaging(0.866) TCGA-BR-6565-01 12 49373448 49373448 G T WNT1 Missense_Mutation p.R101L 0.22 deleterious(0) probably_damaging(0.915) TCGA-BR-6565-01 12 52714852 52714852 C T KRT83 Missense_Mutation p.E90K 0.24 tolerated(0.08) benign(0.135) TCGA-BR-6565-01 12 55420636 55420636 C A NEUROD4 Missense_Mutation p.A138D 0.16 deleterious(0) probably_damaging(1) TCGA-BR-6565-01 12 58009044 58009044 G T ARHGEF25 Missense_Mutation p.V368L 0.13 deleterious(0.01) probably_damaging(0.938) TCGA-BR-6565-01 12 65110492 65110492 G A GNS 3'UTR 0.09 TCGA-BR-6565-01 12 7528429 7528429 T C CD163L1 Silent p.G851G 0.04 TCGA-BR-6565-01 12 78334097 78334097 A G NAV3 Splice_Site p.X82_splice 0.05 TCGA-BR-6565-01 12 78573323 78573323 C A NAV3 Missense_Mutation p.T1771K 0.08 tolerated(0.16) probably_damaging(0.984) TCGA-BR-6565-01 12 8074090 8074090 G A SLC2A3 Silent p.H470H 0.06 TCGA-BR-6565-01 12 85257370 85257370 C A SLC6A15 Missense_Mutation p.D556Y 0.08 deleterious(0) probably_damaging(0.998) TCGA-BR-6565-01 13 111563089 111563089 G A ANKRD10 Missense_Mutation p.A80V 0.11 tolerated(0.92) possibly_damaging(0.451) TCGA-BR-6565-01 13 20025355 20025355 C T TPTE2 Missense_Mutation p.R251Q 0.26 tolerated(0.1) benign(0.013) TCGA-BR-6565-01 13 36223918 36223918 A G NBEA Missense_Mutation p.I2612V 0.05 tolerated(0.73) benign(0.011) TCGA-BR-6565-01 13 79176561 79176561 G T POU4F1 Missense_Mutation p.H83Q 0.25 deleterious(0) possibly_damaging(0.799) TCGA-BR-6565-01 13 99532820 99532820 G T DOCK9 Missense_Mutation p.T951N 0.08 deleterious(0) probably_damaging(0.991) TCGA-BR-6565-01 14 20296431 20296431 A G OR4N2 Missense_Mutation p.H275R 0.05 deleterious(0) probably_damaging(0.911) TCGA-BR-6565-01 14 33290805 33290805 C T AKAP6 Silent p.D1262D 0.16 TCGA-BR-6565-01 14 50587046 50587046 G A SOS2 Missense_Mutation p.P1146S 0.09 tolerated(0.12) benign(0.417) TCGA-BR-6565-01 15 24921098 24921098 G A NPAP1 Silent p.L28L 0.40 TCGA-BR-6565-01 15 66191074 66191074 T C MEGF11 Missense_Mutation p.Y989C 0.16 deleterious(0.01) possibly_damaging(0.662) TCGA-BR-6565-01 15 96877403 96877403 T C NR2F2 Missense_Mutation p.Y181H 0.14 deleterious(0.03) benign(0.03) TCGA-BR-6565-01 16 1505133 1505133 A G CLCN7 Splice_Site p.X366_splice 0.23 TCGA-BR-6565-01 16 30364821 30364821 C T CD2BP2 Missense_Mutation p.A226T 0.14 tolerated(0.08) possibly_damaging(0.718) TCGA-BR-6565-01 16 57792738 57792738 G A KIFC3 3'UTR 0.20 TCGA-BR-6565-01 16 76569621 76569621 C T CNTNAP4 Missense_Mutation p.P906S 0.26 tolerated(0.53) benign(0.011) TCGA-BR-6565-01 17 26816245 26816245 C T SLC13A2 Missense_Mutation p.A39V 0.09 deleterious(0.02) probably_damaging(0.912) TCGA-BR-6565-01 17 27050935 27050935 A T RPL23A 3'UTR 0.44 TCGA-BR-6565-01 17 35454770 35454770 T C ACACA Missense_Mutation p.I2239V 0.05 tolerated(0.06) possibly_damaging(0.872) TCGA-BR-6565-01 17 39525885 39525885 T A KRT33B Missense_Mutation p.N40Y 0.05 tolerated(0.45) benign(0.211) TCGA-BR-6565-01 17 43197709 43197709 C T PLCD3 Missense_Mutation p.A223T 0.21 deleterious(0.02) possibly_damaging(0.515) TCGA-BR-6565-01 17 62500356 62500356 A C DDX5 Nonsense_Mutation p.Y97* 0.13 TCGA-BR-6565-01 17 7579368 7579368 A C TP53 Missense_Mutation p.Y107D 0.31 deleterious(0.01) probably_damaging(0.988) TCGA-BR-6565-01 17 76354533 76354533 C A SOCS3 Missense_Mutation p.R215L 0.18 deleterious(0.01) possibly_damaging(0.6) TCGA-BR-6565-01 17 76354534 76354534 G A SOCS3 Missense_Mutation p.R215W 0.18 deleterious(0) probably_damaging(0.961) TCGA-BR-6565-01 17 76803161 76803161 T C USP36 Silent p.P655P 0.16 TCGA-BR-6565-01 17 76989930 76989930 C G CANT1 Missense_Mutation p.S303T 0.24 deleterious(0) probably_damaging(0.998) TCGA-BR-6565-01 17 8415782 8415782 T G MYH10 Missense_Mutation p.Q980P 0.07 possibly_damaging(0.862) TCGA-BR-6565-01 18 30847250 30847250 C A CCDC178 Missense_Mutation p.L396F 0.13 deleterious(0.04) probably_damaging(0.982) TCGA-BR-6565-01 18 51904563 51904563 C T C18orf54 Missense_Mutation p.R356C 0.27 deleterious(0.04) possibly_damaging(0.835) TCGA-BR-6565-01 19 15538061 15538061 G A WIZ Silent p.P271P 0.08 TCGA-BR-6565-01 19 36515332 36515332 C T CLIP3 Missense_Mutation p.R295H 0.12 deleterious(0) benign(0.288) TCGA-BR-6565-01 19 38817329 38817329 C T KCNK6 Missense_Mutation p.A140V 0.05 tolerated(0.11) benign(0.303) TCGA-BR-6565-01 19 41077990 41077990 G T SPTBN4 Missense_Mutation p.G2462V 0.13 tolerated(0.12) probably_damaging(0.988) TCGA-BR-6565-01 19 51274341 51274341 G C GPR32 Missense_Mutation p.A162P 0.20 deleterious(0.01) probably_damaging(0.986) TCGA-BR-6565-01 19 52091638 52091638 A G ZNF175 Missense_Mutation p.N685S 0.12 tolerated(0.09) possibly_damaging(0.852) TCGA-BR-6565-01 19 8140221 8140221 G A FBN3 Missense_Mutation p.R2510C 0.15 deleterious(0.01) possibly_damaging(0.849) TCGA-BR-6565-01 1 103544369 103544369 A T COL11A1 Silent p.I111I 0.38 TCGA-BR-6565-01 1 110607471 110607471 C T ALX3 Missense_Mutation p.R111Q 0.07 tolerated(0.16) benign(0.001) TCGA-BR-6565-01 1 12069766 12069766 C G MFN2 Missense_Mutation p.S729R 0.05 tolerated(0.24) probably_damaging(0.997) TCGA-BR-6565-01 1 147230319 147230319 C T GJA5 Missense_Mutation p.R343H 0.11 deleterious(0) unknown(0) TCGA-BR-6565-01 1 154127377 154127377 G A NUP210L Silent p.F48F 0.08 TCGA-BR-6565-01 1 159906263 159906263 C T IGSF9 Missense_Mutation p.S200N 0.10 tolerated(0.1) benign(0.021) TCGA-BR-6565-01 1 175087816 175087816 G A TNN Missense_Mutation p.G836R 0.09 deleterious(0.01) probably_damaging(0.938) TCGA-BR-6565-01 1 184787881 184787881 A G FAM129A Missense_Mutation p.M355T 0.09 deleterious(0) possibly_damaging(0.756) TCGA-BR-6565-01 1 200584676 200584676 G C KIF14 Missense_Mutation p.H392D 0.43 deleterious(0.01) probably_damaging(0.934) TCGA-BR-6565-01 1 201337322 201337322 G A TNNT2 Missense_Mutation p.A34V 0.14 tolerated(0.3) unknown(0) TCGA-BR-6565-01 1 222920036 222920036 A C FAM177B Missense_Mutation p.Q50P 0.09 deleterious(0.02) possibly_damaging(0.563) TCGA-BR-6565-01 1 248224383 248224383 C T OR2L3 Missense_Mutation p.R134C 0.44 tolerated(0.09) benign(0.004) TCGA-BR-6565-01 1 2938986 2938986 G C ACTRT2 Missense_Mutation p.D246H 0.07 deleterious(0) probably_damaging(0.999) TCGA-BR-6565-01 1 34182101 34182101 C T CSMD2 Missense_Mutation p.G961D 0.18 deleterious(0) probably_damaging(0.962) TCGA-BR-6565-01 1 68171254 68171254 C T GNG12 Silent p.S33S 0.29 TCGA-BR-6565-01 1 99772187 99772187 C T LPPR4 Missense_Mutation p.S638F 0.21 deleterious(0) possibly_damaging(0.55) TCGA-BR-6565-01 20 3065247 3065247 C T AVP Missense_Mutation p.C25Y 0.07 deleterious(0) probably_damaging(0.999) TCGA-BR-6565-01 20 34832803 34832803 C T AAR2 Silent p.F314F 0.05 TCGA-BR-6565-01 21 10907025 10907025 T G TPTE Missense_Mutation p.K512N 0.14 deleterious(0) benign(0.3) TCGA-BR-6565-01 21 28212246 28212246 G C ADAMTS1 Silent p.G600G 0.14 TCGA-BR-6565-01 21 45710762 45710762 G C AIRE Intron 0.09 TCGA-BR-6565-01 2 102842401 102842401 G A IL1RL2 Silent p.L345L 0.08 TCGA-BR-6565-01 2 141665568 141665568 C T LRP1B Missense_Mutation p.S1133N 0.06 possibly_damaging(0.676) TCGA-BR-6565-01 2 1500379 1500379 G T TPO Missense_Mutation p.G743V 0.08 tolerated(0.05) benign(0.111) TCGA-BR-6565-01 2 21238012 21238012 C G APOB Missense_Mutation p.R1210T 0.05 benign(0.01) TCGA-BR-6565-01 2 218747129 218747129 G A TNS1 Nonsense_Mutation p.R293* 0.10 TCGA-BR-6565-01 2 32640080 32640080 C A BIRC6 Missense_Mutation p.T574K 0.10 benign(0.115) TCGA-BR-6565-01 2 46607710 46607710 C T EPAS1 Silent p.G633G 0.05 TCGA-BR-6565-01 2 64685502 64685502 G A LGALSL Silent p.T153T 0.08 TCGA-BR-6565-01 2 69569333 69569333 C T GFPT1 Missense_Mutation p.R385Q 0.09 deleterious(0.05) possibly_damaging(0.834) TCGA-BR-6565-01 2 73053080 73053080 G C EXOC6B 5'UTR 0.33 TCGA-BR-6565-01 2 73118535 73118535 C T SPR Nonsense_Mutation p.R219* 0.18 TCGA-BR-6565-01 2 74689430 74689430 C T MOGS Missense_Mutation p.A496T 0.15 tolerated(0.12) benign(0.175) TCGA-BR-6565-01 2 95537520 95537520 C T TEKT4 Missense_Mutation p.R66W 0.27 deleterious(0) probably_damaging(0.987) TCGA-BR-6565-01 3 113377235 113377235 G C KIAA2018 Missense_Mutation p.F1098L 0.17 probably_damaging(0.993) TCGA-BR-6565-01 3 139236484 139236484 G A RBP1 Silent p.F193F 0.20 TCGA-BR-6565-01 3 151162781 151162781 T G IGSF10 Missense_Mutation p.N1663T 0.04 deleterious(0) possibly_damaging(0.606) TCGA-BR-6565-01 3 33135129 33135129 G A TMPPE Missense_Mutation p.P187S 0.23 tolerated(0.05) benign(0.043) TCGA-BR-6565-01 3 47042669 47042669 G C NBEAL2 Missense_Mutation p.S1495T 0.26 tolerated(0.23) benign(0.082) TCGA-BR-6565-01 3 47951317 47951317 C T MAP4 Intron 0.12 TCGA-BR-6565-01 3 49006074 49006074 A G ARIH2 Missense_Mutation p.R216G 0.10 tolerated(0.08) possibly_damaging(0.699) TCGA-BR-6565-01 3 49455114 49455114 C A AMT Missense_Mutation p.K357N 0.48 tolerated(0.1) benign(0.138) TCGA-BR-6565-01 3 53778854 53778854 G A CACNA1D Silent p.K1022K 0.18 TCGA-BR-6565-01 3 73433107 73433107 G A PDZRN3 Silent p.H870H 0.11 TCGA-BR-6565-01 3 97356746 97356746 G C EPHA6 Missense_Mutation p.Q868H 0.08 deleterious(0) probably_damaging(0.999) TCGA-BR-6565-01 4 104101522 104101522 G A CENPE Silent p.N396N 0.08 TCGA-BR-6565-01 4 119951305 119951305 G T SYNPO2 Missense_Mutation p.V459F 0.17 deleterious(0) possibly_damaging(0.8) TCGA-BR-6565-01 4 134072365 134072365 A C PCDH10 Missense_Mutation p.E357A 0.07 deleterious(0) benign(0.196) TCGA-BR-6565-01 4 151170753 151170753 G C DCLK2 Missense_Mutation p.E681Q 0.07 tolerated(0.18) possibly_damaging(0.533) TCGA-BR-6565-01 4 23886497 23886497 G C PPARGC1A Missense_Mutation p.L38V 0.12 deleterious(0) probably_damaging(0.996) TCGA-BR-6565-01 4 3446377 3446377 G A HGFAC Missense_Mutation p.G253E 0.29 deleterious(0.03) probably_damaging(0.986) TCGA-BR-6565-01 4 37592414 37592414 T G C4orf19 Missense_Mutation p.V246G 0.17 tolerated(0.07) probably_damaging(0.934) TCGA-BR-6565-01 4 71024501 71024501 C A C4orf40 Missense_Mutation p.P178T 0.15 tolerated(0.23) unknown(0) TCGA-BR-6565-01 4 76539472 76539472 A C CDKL2 Missense_Mutation p.I110M 0.10 deleterious(0) probably_damaging(0.963) TCGA-BR-6565-01 4 82369254 82369254 G C RASGEF1B Missense_Mutation p.T208R 0.12 tolerated(0.21) benign(0.026) TCGA-BR-6565-01 5 101631703 101631703 G C SLCO4C1 Nonsense_Mutation p.Y88* 0.09 TCGA-BR-6565-01 5 112177901 112177901 C T APC Nonsense_Mutation p.R2204* 0.43 TCGA-BR-6565-01 5 140222761 140222761 C A PCDHA8 Missense_Mutation p.R619S 0.35 tolerated_low_confidence(0.07) benign(0.182) TCGA-BR-6565-01 5 140751796 140751796 G A PCDHGB3 Missense_Mutation p.S612N 0.16 deleterious(0.01) possibly_damaging(0.602) TCGA-BR-6565-01 5 140870921 140870921 C G PCDHGC5 Missense_Mutation p.S705C 0.11 tolerated(0.13) probably_damaging(0.956) TCGA-BR-6565-01 5 150914081 150914081 C G FAT2 Missense_Mutation p.V3106L 0.14 benign(0.034) TCGA-BR-6565-01 5 176637132 176637132 G T NSD1 Missense_Mutation p.A578S 0.13 tolerated_low_confidence(0.41) benign(0.034) TCGA-BR-6565-01 5 180030234 180030234 G T FLT4 Silent p.S1350S 0.15 TCGA-BR-6565-01 5 23521174 23521174 G T PRDM9 Nonsense_Mutation p.E132* 0.13 TCGA-BR-6565-01 5 43653307 43653307 G A NNT Missense_Mutation p.G684D 0.41 deleterious(0) probably_damaging(0.994) TCGA-BR-6565-01 5 96518939 96518939 C G CTD-2215E18.1 Missense_Mutation p.A87G 0.09 possibly_damaging(0.578) TCGA-BR-6565-01 6 12120526 12120526 T C HIVEP1 Silent p.S166S 0.28 TCGA-BR-6565-01 6 144858786 144858786 C A UTRN Missense_Mutation p.T2101K 0.25 tolerated(0.33) benign(0.001) TCGA-BR-6565-01 6 146126159 146126159 A G FBXO30 Silent p.F461F 0.05 TCGA-BR-6565-01 6 152658021 152658021 A G SYNE1 Silent p.S4161S 0.16 TCGA-BR-6565-01 6 152671388 152671388 A G SYNE1 Missense_Mutation p.L3939P 0.20 probably_damaging(0.999) TCGA-BR-6565-01 6 17629536 17629536 G C NUP153 Missense_Mutation p.S965C 0.07 deleterious(0) benign(0.196) TCGA-BR-6565-01 6 26197279 26197279 G C HIST1H3D Missense_Mutation p.P67R 0.17 deleterious_low_confidence(0) probably_damaging(1) TCGA-BR-6565-01 6 29141962 29141962 G A OR2J2 Missense_Mutation p.A184T 0.06 deleterious(0.03) benign(0.351) TCGA-BR-6565-01 6 3850733 3850733 G A FAM50B Missense_Mutation p.A230T 0.07 tolerated(0.26) benign(0.065) TCGA-BR-6565-01 6 64422326 64422326 T C PHF3 Silent p.S1614S 0.17 TCGA-BR-6565-01 6 84862599 84862600 - T KIAA1009 Frame_Shift_Ins p.R1099Efs*46 0.17 TCGA-BR-6565-01 6 87725916 87725916 G A HTR1E Silent p.K288K 0.07 TCGA-BR-6565-01 7 100685356 100685356 A G MUC17 Silent p.Q3553Q 0.14 TCGA-BR-6565-01 7 110764339 110764339 C T LRRN3 Missense_Mutation p.A504V 0.06 deleterious(0.04) possibly_damaging(0.725) TCGA-BR-6565-01 7 129474709 129474709 T C UBE2H 3'UTR 0.11 TCGA-BR-6565-01 7 133876492 133876492 A T LRGUK Missense_Mutation p.M474L 0.11 tolerated(0.15) possibly_damaging(0.669) TCGA-BR-6565-01 7 143048760 143048760 C T CLCN1 Missense_Mutation p.T890M 0.08 deleterious(0) possibly_damaging(0.587) TCGA-BR-6565-01 7 16745690 16745690 G A BZW2 Missense_Mutation p.E413K 0.29 tolerated(0.08) unknown(0) TCGA-BR-6565-01 7 48559652 48559652 T C ABCA13 Missense_Mutation p.Y4605H 0.10 probably_damaging(1) TCGA-BR-6565-01 8 113256710 113256710 G C CSMD3 Missense_Mutation p.Q3439E 0.04 deleterious(0) benign(0.241) TCGA-BR-6565-01 8 13072247 13072247 T A DLC1 Intron 0.09 TCGA-BR-6565-01 8 131795942 131795942 C T ADCY8 Missense_Mutation p.R1088Q 0.22 deleterious(0.01) benign(0.019) TCGA-BR-6565-01 8 143570781 143570781 G C BAI1 Missense_Mutation p.E871D 0.07 deleterious(0.05) possibly_damaging(0.523) TCGA-BR-6565-01 8 21959240 21959240 G A FAM160B2 Missense_Mutation p.V577I 0.18 tolerated(0.31) benign(0.086) TCGA-BR-6565-01 8 42868523 42868523 G C HOOK3 Missense_Mutation p.V666L 0.08 deleterious(0.01) probably_damaging(0.992) TCGA-BR-6565-01 8 55055268 55055268 G C MRPL15 Missense_Mutation p.A159P 0.05 deleterious(0) probably_damaging(0.986) TCGA-BR-6565-01 8 57878831 57878831 G A IMPAD1 Missense_Mutation p.R243C 0.12 deleterious(0) probably_damaging(1) TCGA-BR-6565-01 9 132397491 132397491 C G NTMT1 Missense_Mutation p.H140Q 0.09 deleterious(0) probably_damaging(0.991) TCGA-BR-6565-01 9 35662219 35662219 C G ARHGEF39 Missense_Mutation p.E317Q 0.50 tolerated(0.15) benign(0.419) TCGA-BR-6565-01 9 5968974 5968974 G A KIAA2026 Silent p.H419H 0.25 TCGA-BR-6565-01 9 8317903 8317903 G C PTPRD Missense_Mutation p.L1904V 0.11 deleterious(0) possibly_damaging(0.841) TCGA-BR-6565-01 9 91686168 91686168 C A SHC3 Splice_Site p.X244_splice 0.09 TCGA-BR-6565-01 X 131212239 131212239 A C FRMD7 Silent p.P602P 0.11 TCGA-BR-6565-01 X 132161820 132161820 A C USP26 Silent p.S143S 0.18 TCGA-BR-6565-01 X 153594681 153594681 G A FLNA Missense_Mutation p.T408M 0.08 deleterious(0) probably_damaging(0.998) TCGA-BR-6565-01 X 55515195 55515195 G A USP51 Missense_Mutation p.P60S 0.19 tolerated_low_confidence(0.17) unknown(0) TCGA-BR-6565-01 X 84586035 84586035 T G POF1B Silent p.G258G 0.09 TCGA-BR-6566-01 10 101503026 101503026 C T CUTC Missense_Mutation p.R104C 0.27 tolerated(0.05) benign(0.023) TCGA-BR-6566-01 10 102798404 102798404 G A SFXN3 Missense_Mutation p.R263H 0.15 tolerated(0.48) benign(0.038) TCGA-BR-6566-01 10 102824653 102824653 T G KAZALD1 Missense_Mutation p.S297R 0.06 tolerated(0.26) benign(0.23) TCGA-BR-6566-01 10 103370906 103370906 A C FBXW4 3'UTR 0.21 TCGA-BR-6566-01 10 103826834 103826834 C T HPS6 Silent p.L535L 0.25 TCGA-BR-6566-01 10 103867975 103867975 C T LDB1 Missense_Mutation p.G371S 0.06 tolerated(0.3) possibly_damaging(0.812) TCGA-BR-6566-01 10 105005846 105005846 C A RPEL1 Silent p.A31A 0.23 TCGA-BR-6566-01 10 108431121 108431122 - C SORCS1 Frame_Shift_Ins p.E688Gfs*12 0.15 TCGA-BR-6566-01 10 108924061 108924061 C T SORCS1 Missense_Mutation p.R75H 0.14 tolerated_low_confidence(0.23) benign(0.068) TCGA-BR-6566-01 10 108924097 108924097 C T SORCS1 Missense_Mutation p.G63D 0.30 tolerated_low_confidence(0.26) benign(0.019) TCGA-BR-6566-01 10 114169370 114169371 - C ACSL5 Frame_Shift_Ins p.F271Lfs*2 0.17 TCGA-BR-6566-01 10 11505504 11505504 C T USP6NL Missense_Mutation p.A492T 0.16 deleterious(0) probably_damaging(1) TCGA-BR-6566-01 10 119042897 119042898 - T PDZD8 Frame_Shift_Ins p.I1116Nfs*7 0.16 TCGA-BR-6566-01 10 11911830 11911830 C T PROSER2 Missense_Mutation p.P245S 0.23 tolerated(0.2) benign(0.03) TCGA-BR-6566-01 10 119805671 119805671 T G RAB11FIP2 Missense_Mutation p.M2L 0.08 tolerated(0.08) possibly_damaging(0.651) TCGA-BR-6566-01 10 122622314 122622315 - A WDR11 Frame_Shift_Ins p.V201Sfs*9 0.18 TCGA-BR-6566-01 10 123256201 123256201 C G FGFR2 Missense_Mutation p.G571R 0.14 deleterious(0) probably_damaging(0.979) TCGA-BR-6566-01 10 129347763 129347763 C T NPS Missense_Mutation p.L7F 0.21 tolerated(0.32) benign(0.003) TCGA-BR-6566-01 10 13178969 13178969 A G OPTN 3'UTR 0.11 TCGA-BR-6566-01 10 133963530 133963530 C T JAKMIP3 Silent p.G664G 0.17 TCGA-BR-6566-01 10 14950368 14950368 T - DCLRE1C 3'UTR 0.35 TCGA-BR-6566-01 10 17363280 17363280 A C ST8SIA6 Missense_Mutation p.F265C 0.21 deleterious(0) probably_damaging(0.928) TCGA-BR-6566-01 10 20432315 20432315 C T PLXDC2 Silent p.S211S 0.28 TCGA-BR-6566-01 10 21097514 21097514 C A NEBL Missense_Mutation p.D896Y 0.21 tolerated(0.08) benign(0.013) TCGA-BR-6566-01 10 21139364 21139364 G A NEBL Missense_Mutation p.S359L 0.22 tolerated(0.08) benign(0.012) TCGA-BR-6566-01 10 21177122 21177122 G A NEBL Silent p.G91G 0.19 TCGA-BR-6566-01 10 21805337 21805337 C T SKIDA1 Missense_Mutation p.C472Y 0.27 deleterious_low_confidence(0) unknown(0) TCGA-BR-6566-01 10 24669902 24669902 G - KIAA1217 Frame_Shift_Del p.D155Mfs*19 0.08 TCGA-BR-6566-01 10 255850 255850 T C ZMYND11 Silent p.G46G 0.19 TCGA-BR-6566-01 10 26506598 26506598 G A GAD2 Missense_Mutation p.A46T 0.35 deleterious_low_confidence(0.01) benign(0.159) TCGA-BR-6566-01 10 38299639 38299639 G A ZNF33A 5'UTR 0.13 TCGA-BR-6566-01 10 48429293 48429293 C T GDF10 Missense_Mutation p.R198H 0.21 deleterious(0) probably_damaging(0.997) TCGA-BR-6566-01 10 486873 486873 G T DIP2C Missense_Mutation p.P111H 0.21 deleterious(0) probably_damaging(0.983) TCGA-BR-6566-01 10 51579211 51579211 C T NCOA4 Missense_Mutation p.R40W 0.24 deleterious(0.04) benign(0.051) TCGA-BR-6566-01 10 51769139 51769139 C T AGAP6 Silent p.G418G 0.21 TCGA-BR-6566-01 10 52003089 52003089 T - ASAH2 Frame_Shift_Del p.Q128Rfs*33 0.18 TCGA-BR-6566-01 10 54074113 54074113 A C DKK1 5'UTR 0.20 TCGA-BR-6566-01 10 61022345 61022345 A C FAM13C Missense_Mutation p.L362R 0.25 tolerated(0.4) benign(0.059) TCGA-BR-6566-01 10 61414261 61414261 C T SLC16A9 Missense_Mutation p.G175S 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-BR-6566-01 10 61843307 61843307 C T ANK3 Silent p.Q1381Q 0.23 TCGA-BR-6566-01 10 64425917 64425917 A C ZNF365 Missense_Mutation p.N417H 0.10 deleterious_low_confidence(0) possibly_damaging(0.844) TCGA-BR-6566-01 10 70446170 70446170 C T TET1 Nonsense_Mutation p.Q1704* 0.12 TCGA-BR-6566-01 10 71129308 71129308 G A HK1 Missense_Mutation p.G272E 0.08 deleterious(0.03) probably_damaging(0.932) TCGA-BR-6566-01 10 71332527 71332527 G A NEUROG3 Silent p.R91R 0.10 TCGA-BR-6566-01 10 7327695 7327695 G A SFMBT2 Intron 0.27 TCGA-BR-6566-01 10 73767317 73767317 G - CHST3 Frame_Shift_Del p.G178Afs*38 0.12 TCGA-BR-6566-01 10 75529233 75529233 G T SEC24C Missense_Mutation p.M851I 0.12 tolerated(0.1) benign(0.084) TCGA-BR-6566-01 10 7788613 7788613 C A ITIH2 Missense_Mutation p.P880H 0.16 deleterious(0) probably_damaging(0.954) TCGA-BR-6566-01 10 78646953 78646953 C T KCNMA1 3'Flank 0.21 TCGA-BR-6566-01 10 890939 890939 T - LARP4B Frame_Shift_Del p.T163Hfs*47 0.25 TCGA-BR-6566-01 10 90672691 90672691 T - STAMBPL1 Intron 0.26 TCGA-BR-6566-01 10 90708573 90708573 G A ACTA2 Missense_Mutation p.R39C 0.10 tolerated_low_confidence(0.08) benign(0.151) TCGA-BR-6566-01 10 91143709 91143709 T C IFIT1B Silent p.N213N 0.23 TCGA-BR-6566-01 10 93767970 93767970 A - BTAF1 Frame_Shift_Del p.K1252Nfs*23 0.29 TCGA-BR-6566-01 10 94294397 94294397 A G IDE Silent p.S143S 0.21 TCGA-BR-6566-01 10 96013971 96013971 G A PLCE1 Missense_Mutation p.D1102N 0.19 tolerated(0.11) possibly_damaging(0.847) TCGA-BR-6566-01 10 96116929 96116929 A G NOC3L Splice_Site p.X170_splice 0.12 TCGA-BR-6566-01 11 100211267 100211267 G A CNTN5 Missense_Mutation p.V935I 0.16 tolerated(0.37) benign(0.003) TCGA-BR-6566-01 11 10483162 10483162 G T AMPD3 Missense_Mutation p.E41D 0.23 tolerated(0.07) probably_damaging(0.996) TCGA-BR-6566-01 11 10673666 10673666 C T MRVI1 Missense_Mutation p.R44H 0.11 tolerated_low_confidence(0.17) benign(0.006) TCGA-BR-6566-01 11 108216545 108216545 C T ATM Missense_Mutation p.R2832C 0.20 deleterious(0) probably_damaging(0.993) TCGA-BR-6566-01 11 108381075 108381075 G A EXPH5 Missense_Mutation p.T1720I 0.18 tolerated(0.26) benign(0.09) TCGA-BR-6566-01 11 113704196 113704196 C T USP28 Silent p.P235P 0.06 TCGA-BR-6566-01 11 113934826 113934826 G - ZBTB16 Frame_Shift_Del p.D270Tfs*77 0.12 TCGA-BR-6566-01 11 114278312 114278312 C T RBM7 Missense_Mutation p.S195L 0.22 tolerated(0.71) benign(0.002) TCGA-BR-6566-01 11 117152774 117152774 C A RNF214 Silent p.S500S 0.03 TCGA-BR-6566-01 11 118344459 118344459 G A KMT2A Missense_Mutation p.R862Q 0.28 benign(0.129) TCGA-BR-6566-01 11 118965850 118965850 C T H2AFX Silent p.Q85Q 0.03 TCGA-BR-6566-01 11 119045262 119045262 T C NLRX1 Missense_Mutation p.L317P 0.05 tolerated(0.11) probably_damaging(1) TCGA-BR-6566-01 11 123994983 123994983 A G VWA5A Missense_Mutation p.S402G 0.06 tolerated(0.11) benign(0.139) TCGA-BR-6566-01 11 124179741 124179741 T G OR8D1 Missense_Mutation p.K308Q 0.16 deleterious(0.03) benign(0.003) TCGA-BR-6566-01 11 124794951 124794951 C - HEPACAM Frame_Shift_Del p.V34* 0.23 TCGA-BR-6566-01 11 14156984 14156984 C T RNA5SP332 3'Flank 0.15 TCGA-BR-6566-01 11 14156987 14156987 C T RNA5SP332 3'Flank 0.26 TCGA-BR-6566-01 11 17428671 17428671 C T ABCC8 Missense_Mutation p.A976T 0.23 tolerated(0.5) benign(0.001) TCGA-BR-6566-01 11 18631308 18631308 C A SPTY2D1 3'UTR 0.20 TCGA-BR-6566-01 11 19253779 19253779 A G E2F8 Splice_Site p.X356_splice 0.04 TCGA-BR-6566-01 11 20127169 20127169 G - NAV2 Frame_Shift_Del p.V2306Cfs*7 0.14 TCGA-BR-6566-01 11 30033234 30033234 T G KCNA4 Missense_Mutation p.E331A 0.22 deleterious(0.02) probably_damaging(0.98) TCGA-BR-6566-01 11 30255240 30255240 C A FSHB Missense_Mutation p.P95T 0.08 deleterious(0) probably_damaging(1) TCGA-BR-6566-01 11 44286624 44286624 G - ALX4 Frame_Shift_Del p.P339Lfs*12 0.22 TCGA-BR-6566-01 11 44956568 44956568 A G TP53I11 Missense_Mutation p.V146A 0.08 tolerated(0.17) possibly_damaging(0.894) TCGA-BR-6566-01 11 45949811 45949811 C T GYLTL1B Missense_Mutation p.A613V 0.08 tolerated(0.08) benign(0.42) TCGA-BR-6566-01 11 4615645 4615645 G A OR52I1 Missense_Mutation p.R126H 0.13 deleterious(0.02) benign(0.24) TCGA-BR-6566-01 11 46465080 46465080 A G AMBRA1 Missense_Mutation p.W774R 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-BR-6566-01 11 46700719 46700719 G A ARHGAP1 Silent p.F396F 0.20 TCGA-BR-6566-01 11 46741280 46741280 G A F2 Silent p.S36S 0.29 TCGA-BR-6566-01 11 46829626 46829626 T C CKAP5 Silent p.K311K 0.16 TCGA-BR-6566-01 11 47431758 47431758 G A SLC39A13 Missense_Mutation p.R38Q 0.15 tolerated_low_confidence(0.42) benign(0.004) TCGA-BR-6566-01 11 47611775 47611775 C T C1QTNF4 Silent p.P196P 0.25 TCGA-BR-6566-01 11 48328082 48328082 A G OR4S1 Missense_Mutation p.H103R 0.08 deleterious(0) probably_damaging(0.991) TCGA-BR-6566-01 11 5373205 5373205 A G OR51B6 Silent p.P156P 0.09 TCGA-BR-6566-01 11 5475541 5475541 C A OR51I2 Missense_Mutation p.L275I 0.10 tolerated(0.15) possibly_damaging(0.566) TCGA-BR-6566-01 11 55861106 55861106 T C OR8I2 Missense_Mutation p.V108A 0.21 tolerated(0.89) benign(0.002) TCGA-BR-6566-01 11 5602431 5602431 T A OR52B6 Missense_Mutation p.Y109N 0.17 tolerated(0.08) benign(0.026) TCGA-BR-6566-01 11 56143123 56143123 G T OR8U1 Missense_Mutation p.Q8H 0.13 tolerated(0.57) benign(0.002) TCGA-BR-6566-01 11 563636 563636 G T RASSF7 Missense_Mutation p.Q371H 0.26 tolerated_low_confidence(0.23) benign(0.069) TCGA-BR-6566-01 11 57185246 57185246 G T SLC43A3 Missense_Mutation p.P216T 0.10 tolerated(0.08) possibly_damaging(0.836) TCGA-BR-6566-01 11 5906226 5906226 G A OR52E4 Missense_Mutation p.R235Q 0.10 tolerated(0.12) benign(0.133) TCGA-BR-6566-01 11 59622135 59622135 T C TCN1 Missense_Mutation p.T371A 0.08 tolerated(0.19) benign(0.308) TCGA-BR-6566-01 11 60689416 60689416 G A TMEM109 Missense_Mutation p.G171S 0.08 tolerated(0.37) benign(0.103) TCGA-BR-6566-01 11 61533569 61533569 C - MYRF Frame_Shift_Del p.P93Rfs*7 0.24 TCGA-BR-6566-01 11 61912511 61912511 C T INCENP Missense_Mutation p.R555C 0.17 deleterious(0.01) unknown(0) TCGA-BR-6566-01 11 62381092 62381111 GCTCCTGGTCGTCGGCCTCG CTCCTGGACGTCGCCCTCC ROM1 Frame_Shift_Del p.L114Sfs*8 0.11 TCGA-BR-6566-01 11 6292358 6292358 C T CCKBR Missense_Mutation p.T310M 0.19 tolerated(0.05) benign(0.276) TCGA-BR-6566-01 11 63398579 63398579 C A ATL3 Missense_Mutation p.R491M 0.06 deleterious(0) possibly_damaging(0.907) TCGA-BR-6566-01 11 63398938 63398938 A C ATL3 Missense_Mutation p.C371W 0.31 deleterious(0) probably_damaging(1) TCGA-BR-6566-01 11 64028918 64028918 T G PLCB3 Missense_Mutation p.L593R 0.19 deleterious(0) probably_damaging(1) TCGA-BR-6566-01 11 64064615 64064615 C - KCNK4 Frame_Shift_Del p.T113Kfs*46 0.14 TCGA-BR-6566-01 11 64138941 64138941 C - RPS6KA4 Frame_Shift_Del p.S772Pfs*12 0.40 TCGA-BR-6566-01 11 6520167 6520167 A T DNHD1 Missense_Mutation p.E241V 0.16 benign(0.391) TCGA-BR-6566-01 11 65269498 65269498 T - MALAT1 RNA 0.33 TCGA-BR-6566-01 11 65315479 65315479 G A LTBP3 Silent p.G586G 0.18 TCGA-BR-6566-01 11 65629422 65629422 C T MUS81 Missense_Mutation p.P119L 0.27 tolerated(0.12) benign(0.002) TCGA-BR-6566-01 11 66411100 66411100 C T RBM14-RBM4 Missense_Mutation p.R173C 0.26 deleterious(0.05) benign(0.009) TCGA-BR-6566-01 11 67048584 67048584 C T ADRBK1 Silent p.S192S 0.24 TCGA-BR-6566-01 11 70009450 70009450 A C ANO1 Intron 0.06 TCGA-BR-6566-01 11 71698147 71698149 TTA - RNF121 In_Frame_Del p.L167del 0.22 TCGA-BR-6566-01 11 73714711 73714711 T - UCP3 Intron 0.21 TCGA-BR-6566-01 11 74876908 74876908 G T SLCO2B1 Missense_Mutation p.G121V 0.05 deleterious(0) probably_damaging(0.984) TCGA-BR-6566-01 11 77916960 77916960 G A USP35 Missense_Mutation p.E424K 0.05 tolerated(0.25) unknown(0) TCGA-BR-6566-01 11 77936163 77936163 G A GAB2 Silent p.G431G 0.08 TCGA-BR-6566-01 11 85396904 85396904 G A CCDC89 Silent p.R90R 0.11 TCGA-BR-6566-01 11 89883713 89883713 G T NAALAD2 Missense_Mutation p.G183C 0.25 deleterious(0.01) possibly_damaging(0.844) TCGA-BR-6566-01 11 92087030 92087030 G T FAT3 Missense_Mutation p.Q584H 0.27 benign(0.009) TCGA-BR-6566-01 11 94038823 94038823 C T FOLR4 Silent p.L7L 0.22 TCGA-BR-6566-01 11 95555113 95555113 A - CEP57 Frame_Shift_Del p.K262Rfs*31 0.22 TCGA-BR-6566-01 12 102164266 102164266 C T GNPTAB Missense_Mutation p.R344Q 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-BR-6566-01 12 102301997 102301997 G A DRAM1 Missense_Mutation p.A126T 0.06 deleterious(0.04) possibly_damaging(0.775) TCGA-BR-6566-01 12 104140466 104140466 C T STAB2 Silent p.D2076D 0.04 TCGA-BR-6566-01 12 104155080 104155080 G A STAB2 Silent p.T2417T 0.22 TCGA-BR-6566-01 12 104497057 104497057 T - HCFC2 3'UTR 0.26 TCGA-BR-6566-01 12 105388460 105388460 A - C12orf45 Frame_Shift_Del p.K184Rfs*13 0.25 TCGA-BR-6566-01 12 105601755 105601755 A G APPL2 Silent p.N162N 0.32 TCGA-BR-6566-01 12 106466564 106466564 A - NUAK1 Frame_Shift_Del p.C213Vfs*75 0.12 TCGA-BR-6566-01 12 109644517 109644517 T C ACACB Silent p.A972A 0.05 TCGA-BR-6566-01 12 109677741 109677741 A C ACACB Missense_Mutation p.N1590T 0.06 deleterious(0) probably_damaging(1) TCGA-BR-6566-01 12 109858795 109858795 A - MYO1H Frame_Shift_Del p.N522Tfs*9 0.19 TCGA-BR-6566-01 12 110788167 110788167 T - ATP2A2 3'Flank 0.21 TCGA-BR-6566-01 12 111923108 111923108 T C ATXN2 Missense_Mutation p.M989V 0.31 probably_damaging(0.968) TCGA-BR-6566-01 12 113348918 113348918 A G OAS1 Missense_Mutation p.T178A 0.08 tolerated(0.19) benign(0.107) TCGA-BR-6566-01 12 113543607 113543607 G A RASAL1 Missense_Mutation p.A582V 0.08 tolerated(0.17) benign(0.008) TCGA-BR-6566-01 12 118105367 118105367 G A KSR2 Silent p.S361S 0.21 TCGA-BR-6566-01 12 120142226 120142226 G T CIT Missense_Mutation p.P1749H 0.05 tolerated(0.14) probably_damaging(0.954) TCGA-BR-6566-01 12 122619803 122619804 AT - MLXIP Frame_Shift_Del p.M589Dfs*139 0.10 TCGA-BR-6566-01 12 12278295 12278295 G A LRP6 Nonsense_Mutation p.R1462* 0.08 TCGA-BR-6566-01 12 123082320 123082320 T C KNTC1 Silent p.I1466I 0.12 TCGA-BR-6566-01 12 123339495 123339495 C T HIP1R Silent p.H254H 0.24 TCGA-BR-6566-01 12 124106216 124106216 T - EIF2B1 3'UTR 0.16 TCGA-BR-6566-01 12 124297909 124297909 C T DNAH10 Nonsense_Mutation p.R997* 0.38 TCGA-BR-6566-01 12 124862855 124862855 C T NCOR2 Missense_Mutation p.V699M 0.31 unknown(0) TCGA-BR-6566-01 12 130184785 130184785 G A TMEM132D Missense_Mutation p.R180W 0.14 deleterious(0) probably_damaging(0.996) TCGA-BR-6566-01 12 13716547 13716547 G A GRIN2B Missense_Mutation p.R1209W 0.12 deleterious(0) possibly_damaging(0.83) TCGA-BR-6566-01 12 1372286 1372286 G A ERC1 Missense_Mutation p.M858I 0.15 tolerated(0.11) benign(0.232) TCGA-BR-6566-01 12 14927697 14927697 T C H2AFJ Missense_Mutation p.L98P 0.05 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-BR-6566-01 12 18865917 18865917 G A PLCZ1 Silent p.A191A 0.14 TCGA-BR-6566-01 12 21207464 21207464 A T SLCO1B7 Nonsense_Mutation p.R479* 0.11 TCGA-BR-6566-01 12 23728680 23728680 A C SOX5 Silent p.A419A 0.09 TCGA-BR-6566-01 12 32908133 32908133 C T YARS2 Missense_Mutation p.A226T 0.20 deleterious(0) probably_damaging(0.998) TCGA-BR-6566-01 12 33532785 33532785 G A SYT10 Silent p.H494H 0.05 TCGA-BR-6566-01 12 40677742 40677742 A G LRRK2 Silent p.Q769Q 0.26 TCGA-BR-6566-01 12 40734203 40734203 G A LRRK2 Missense_Mutation p.G2019D 0.06 deleterious(0) probably_damaging(1) TCGA-BR-6566-01 12 48191938 48191938 C T HDAC7 Silent p.A138A 0.05 TCGA-BR-6566-01 12 49444339 49444339 G A KMT2D Missense_Mutation p.P1011L 0.07 benign(0.011) TCGA-BR-6566-01 12 49943878 49943878 C A KCNH3 Missense_Mutation p.P562T 0.11 deleterious(0) probably_damaging(0.995) TCGA-BR-6566-01 12 5020458 5020458 C T KCNA1 5'UTR 0.46 TCGA-BR-6566-01 12 50399110 50399110 G A RACGAP1 Silent p.S118S 0.36 TCGA-BR-6566-01 12 52374774 52374774 G A ACVR1B Missense_Mutation p.R201H 0.10 deleterious(0) probably_damaging(0.999) TCGA-BR-6566-01 12 52826980 52826980 C T KRT75 Silent p.Q185Q 0.09 TCGA-BR-6566-01 12 54936413 54936413 T C NCKAP1L Missense_Mutation p.Y1110H 0.24 deleterious(0) probably_damaging(1) TCGA-BR-6566-01 12 55725984 55725984 C T OR6C3 Missense_Mutation p.A167V 0.04 tolerated_low_confidence(0.11) benign(0.007) TCGA-BR-6566-01 12 55820443 55820443 A C OR6C76 Silent p.R136R 0.06 TCGA-BR-6566-01 12 56662937 56662937 C T COQ10A Missense_Mutation p.R126C 0.31 deleterious(0) probably_damaging(0.978) TCGA-BR-6566-01 12 58204205 58204205 G A AVIL Missense_Mutation p.R230C 0.08 deleterious(0.01) possibly_damaging(0.863) TCGA-BR-6566-01 12 64488720 64488720 A T SRGAP1 Silent p.G516G 0.08 TCGA-BR-6566-01 12 6500104 6500104 C T LTBR 3'UTR 0.04 TCGA-BR-6566-01 12 6882045 6882045 G A LAG3 Silent p.L9L 0.16 TCGA-BR-6566-01 12 6933449 6933449 A G GPR162 Missense_Mutation p.N129D 0.05 deleterious(0.04) probably_damaging(0.926) TCGA-BR-6566-01 12 6973278 6973278 C - USP5 Frame_Shift_Del p.P723Lfs*6 0.21 TCGA-BR-6566-01 12 70824487 70824487 C T KCNMB4 3'UTR 0.23 TCGA-BR-6566-01 12 7249400 7249400 G - C1RL Frame_Shift_Del p.L351Wfs*35 0.10 TCGA-BR-6566-01 12 7526223 7526223 C T CD163L1 Silent p.L1141L 0.04 TCGA-BR-6566-01 12 75784952 75784952 C A GLIPR1L2 Missense_Mutation p.A19E 0.25 tolerated_low_confidence(0.48) benign(0.105) TCGA-BR-6566-01 12 81331469 81331469 C T LIN7A Silent p.T11T 0.16 TCGA-BR-6566-01 12 85626524 85626524 T C LRRIQ1 Missense_Mutation p.V1669A 0.25 deleterious(0) probably_damaging(0.997) TCGA-BR-6566-01 12 89743155 89743155 A C DUSP6 Missense_Mutation p.L341R 0.04 deleterious(0.04) possibly_damaging(0.607) TCGA-BR-6566-01 12 94729387 94729387 T - CCDC41 Frame_Shift_Del p.N466Mfs*6 0.32 TCGA-BR-6566-01 12 94772789 94772791 TTC - CCDC41 In_Frame_Del p.E193del 0.31 TCGA-BR-6566-01 12 95656840 95656840 G A VEZT Silent p.L139L 0.22 TCGA-BR-6566-01 12 99061338 99061338 G A APAF1 Silent p.P470P 0.05 TCGA-BR-6566-01 13 113536511 113536511 C T ATP11A 3'UTR 0.14 TCGA-BR-6566-01 13 20411699 20411699 C T ZMYM5 Missense_Mutation p.V379I 0.11 tolerated_low_confidence(0.41) unknown(0) TCGA-BR-6566-01 13 21371027 21371027 A - XPO4 Frame_Shift_Del p.L831* 0.12 TCGA-BR-6566-01 13 24465970 24465970 T C C1QTNF9B Missense_Mutation p.M154V 0.18 tolerated(0.33) benign(0) TCGA-BR-6566-01 13 25825905 25825905 C A MTMR6 Missense_Mutation p.R496M 0.18 deleterious(0.03) benign(0.375) TCGA-BR-6566-01 13 32761728 32761728 G T FRY Missense_Mutation p.G1176C 0.41 deleterious(0) probably_damaging(0.96) TCGA-BR-6566-01 13 41525494 41525494 G - ELF1 Frame_Shift_Del p.P111Lfs*10 0.12 TCGA-BR-6566-01 13 42179380 42179380 G A VWA8 Missense_Mutation p.A1637V 0.16 deleterious(0.03) probably_damaging(0.98) TCGA-BR-6566-01 13 45147869 45147869 G T TSC22D1 Missense_Mutation p.A781D 0.07 tolerated(0.1) benign(0.25) TCGA-BR-6566-01 13 46539429 46539429 T G ZC3H13 Missense_Mutation p.E1487A 0.03 unknown(0) TCGA-BR-6566-01 13 49865876 49865876 C T CDADC1 Missense_Mutation p.R510C 0.16 tolerated_low_confidence(0.37) benign(0) TCGA-BR-6566-01 13 53420276 53420276 C T PCDH8 Missense_Mutation p.A766T 0.20 deleterious(0) probably_damaging(0.991) TCGA-BR-6566-01 13 75898529 75898529 G A TBC1D4 Missense_Mutation p.S681L 0.27 tolerated(0.22) benign(0) TCGA-BR-6566-01 13 76382165 76382165 G A LMO7 Silent p.R349R 0.19 TCGA-BR-6566-01 13 77732134 77732134 T C MYCBP2 Silent p.E2198E 0.15 TCGA-BR-6566-01 13 78492668 78492668 G A EDNRB Missense_Mutation p.A104V 0.26 deleterious_low_confidence(0.01) probably_damaging(0.926) TCGA-BR-6566-01 13 88329399 88329399 C A SLITRK5 Missense_Mutation p.L586I 0.20 tolerated(0.12) benign(0.014) TCGA-BR-6566-01 13 99118674 99118674 G T STK24 Missense_Mutation p.L259I 0.13 deleterious(0) possibly_damaging(0.82) TCGA-BR-6566-01 14 100934422 100934422 G T WDR25 Missense_Mutation p.R296L 0.24 deleterious(0) probably_damaging(0.998) TCGA-BR-6566-01 14 101416228 101416228 A T SNORD114-1 RNA 0.09 TCGA-BR-6566-01 14 103174857 103174857 C T RCOR1 Missense_Mutation p.T239M 0.11 deleterious(0) probably_damaging(0.973) TCGA-BR-6566-01 14 105477665 105477665 C - CDCA4 Frame_Shift_Del p.G201Vfs*46 0.23 TCGA-BR-6566-01 14 105517586 105517586 C T GPR132 Silent p.L296L 0.08 TCGA-BR-6566-01 14 105693010 105693010 G - BRF1 Frame_Shift_Del p.S293Rfs*11 0.09 TCGA-BR-6566-01 14 105849215 105849215 G A PACS2 Silent p.A530A 0.22 TCGA-BR-6566-01 14 20711372 20711372 A G OR11H4 Missense_Mutation p.Q141R 0.16 tolerated(0.1) benign(0.001) TCGA-BR-6566-01 14 21460309 21460309 C T METTL17 Missense_Mutation p.R131C 0.24 deleterious(0.04) benign(0.049) TCGA-BR-6566-01 14 24568857 24568857 C T PCK2 Missense_Mutation p.R315W 0.04 deleterious(0.01) possibly_damaging(0.636) TCGA-BR-6566-01 14 24663934 24663934 G A TM9SF1 Missense_Mutation p.R98W 0.06 deleterious(0.01) probably_damaging(0.93) TCGA-BR-6566-01 14 25078817 25078817 C A GZMH Translation_Start_Site p.M1? 0.25 deleterious(0) unknown(0) TCGA-BR-6566-01 14 34029327 34029327 T C NPAS3 Missense_Mutation p.S157P 0.13 deleterious(0) benign(0.055) TCGA-BR-6566-01 14 35331423 35331423 T - BAZ1A Frame_Shift_Del p.A74Qfs*12 0.21 TCGA-BR-6566-01 14 53194224 53194224 C T PSMC6 Silent p.F367F 0.24 TCGA-BR-6566-01 14 53513450 53513480 AATCAGTTTTAGGCCATTCATGTCCTTCAAG TCAGTTTTAGGCCATTCATGTCCTTCA DDHD1 3'UTR 0.18 TCGA-BR-6566-01 14 55477052 55477052 C T WDHD1 Missense_Mutation p.G106S 0.29 deleterious(0.01) probably_damaging(0.988) TCGA-BR-6566-01 14 68086712 68086712 C T ARG2 Silent p.S6S 0.18 TCGA-BR-6566-01 14 68159192 68159192 A G RDH11 Silent p.T104T 0.14 TCGA-BR-6566-01 14 70990275 70990275 A G ADAM20 Silent p.Y450Y 0.25 TCGA-BR-6566-01 14 72171482 72171482 G A SIPA1L1 Missense_Mutation p.E1231K 0.23 tolerated(0.05) benign(0.002) TCGA-BR-6566-01 14 79270136 79270136 G - NRXN3 Frame_Shift_Del p.R369Vfs*8 0.17 TCGA-BR-6566-01 14 79746738 79746738 G A NRXN3 Intron 0.17 TCGA-BR-6566-01 14 89747303 89747303 G T FOXN3 Missense_Mutation p.L246I 0.27 tolerated(0.22) probably_damaging(0.997) TCGA-BR-6566-01 14 90755357 90755357 G A NRDE2 Missense_Mutation p.H788Y 0.24 tolerated(0.29) benign(0.013) TCGA-BR-6566-01 14 90767681 90767681 C T NRDE2 Missense_Mutation p.A483T 0.07 tolerated(0.05) possibly_damaging(0.6) TCGA-BR-6566-01 14 94929494 94929496 ATC - SERPINA9 In_Frame_Del p.M414del 0.18 TCGA-BR-6566-01 14 95786119 95786119 T C CLMN Missense_Mutation p.H4R 0.13 tolerated(0.11) benign(0.003) TCGA-BR-6566-01 14 96800759 96800759 G A ATG2B Missense_Mutation p.A335V 0.07 deleterious(0.01) possibly_damaging(0.874) TCGA-BR-6566-01 15 102182698 102182698 C A TM2D3 Missense_Mutation p.G243V 0.24 deleterious(0) probably_damaging(0.998) TCGA-BR-6566-01 15 20649514 20649514 G T HERC2P3 RNA 0.10 TCGA-BR-6566-01 15 23811706 23811706 G A MKRN3 Missense_Mutation p.M259I 0.21 tolerated(0.19) benign(0.002) TCGA-BR-6566-01 15 23812005 23812005 A C MKRN3 Missense_Mutation p.K359T 0.10 deleterious(0) probably_damaging(0.999) TCGA-BR-6566-01 15 24921372 24921372 A G NPAP1 Missense_Mutation p.S120G 0.07 tolerated(1) benign(0.032) TCGA-BR-6566-01 15 24922571 24922571 G C NPAP1 Missense_Mutation p.M519I 0.12 tolerated(0.13) benign(0.007) TCGA-BR-6566-01 15 24922914 24922914 A T NPAP1 Missense_Mutation p.S634C 0.19 deleterious(0.04) benign(0.26) TCGA-BR-6566-01 15 30010323 30010323 C A TJP1 Splice_Site p.X1293_splice 0.20 TCGA-BR-6566-01 15 32460281 32460281 G A CHRNA7 Silent p.P406P 0.16 TCGA-BR-6566-01 15 34649741 34649741 G A NUTM1 3'UTR 0.05 TCGA-BR-6566-01 15 40707611 40707611 C T IVD Missense_Mutation p.A300V 0.09 deleterious(0) possibly_damaging(0.738) TCGA-BR-6566-01 15 41192156 41192156 C A VPS18 Silent p.A380A 0.15 TCGA-BR-6566-01 15 41228487 41228487 C T DLL4 Silent p.G434G 0.29 TCGA-BR-6566-01 15 41819655 41819655 G A RPAP1 Missense_Mutation p.P526L 0.22 deleterious(0) possibly_damaging(0.448) TCGA-BR-6566-01 15 43531359 43531359 A G TGM5 Splice_Site p.X369_splice 0.22 TCGA-BR-6566-01 15 43892208 43892208 C T STRC Missense_Mutation p.R1730Q 0.14 tolerated(0.95) benign(0.004) TCGA-BR-6566-01 15 45003725 45003725 C A B2M 5'UTR 0.08 TCGA-BR-6566-01 15 45003747 45003747 G A B2M Translation_Start_Site p.M1? 0.17 deleterious(0) possibly_damaging(0.775) TCGA-BR-6566-01 15 45003781 45003782 CT - B2M Frame_Shift_Del p.L15Ffs*41 0.26 TCGA-BR-6566-01 15 48063126 48063126 A G SEMA6D Missense_Mutation p.K789R 0.30 tolerated(0.81) benign(0.025) TCGA-BR-6566-01 15 48780642 48780642 C T FBN1 Missense_Mutation p.C1044Y 0.22 probably_damaging(0.999) TCGA-BR-6566-01 15 50836866 50836866 T C USP50 Missense_Mutation p.N56D 0.07 deleterious(0) probably_damaging(1) TCGA-BR-6566-01 15 54306720 54306720 T - UNC13C Frame_Shift_Del p.F542Sfs*65 0.26 TCGA-BR-6566-01 15 56144622 56144622 C A NEDD4 Missense_Mutation p.Q729H 0.09 deleterious(0.04) probably_damaging(0.987) TCGA-BR-6566-01 15 57489984 57489984 A - TCF12 Frame_Shift_Del p.V183Sfs*62 0.24 TCGA-BR-6566-01 15 58001264 58001264 T C POLR2M Missense_Mutation p.S156P 0.15 tolerated(0.24) benign(0.009) TCGA-BR-6566-01 15 59368267 59368267 A G RNF111 Missense_Mutation p.I601V 0.15 tolerated_low_confidence(1) benign(0.001) TCGA-BR-6566-01 15 64222642 64222642 A G DAPK2 Missense_Mutation p.V199A 0.19 deleterious(0) probably_damaging(0.961) TCGA-BR-6566-01 15 66737006 66737006 C A MAP2K1 Missense_Mutation p.L177M 0.09 deleterious(0) probably_damaging(0.936) TCGA-BR-6566-01 15 67664873 67664873 G A IQCH Missense_Mutation p.R393H 0.19 deleterious(0.02) benign(0.201) TCGA-BR-6566-01 15 70959562 70959562 T C UACA Missense_Mutation p.Q1154R 0.04 tolerated(0.25) benign(0.005) TCGA-BR-6566-01 15 72499193 72499193 C T PKM Missense_Mutation p.R339H 0.21 deleterious(0.04) benign(0.309) TCGA-BR-6566-01 15 74741564 74741564 G A UBL7 Missense_Mutation p.P282L 0.17 deleterious(0.03) benign(0.002) TCGA-BR-6566-01 15 75108840 75108840 G A LMAN1L Missense_Mutation p.G135R 0.15 deleterious(0.02) probably_damaging(0.998) TCGA-BR-6566-01 15 75970141 75970141 G T CSPG4 Silent p.S1679S 0.15 TCGA-BR-6566-01 15 75979870 75979870 C T CSPG4 Missense_Mutation p.R1179Q 0.20 tolerated(0.13) benign(0.035) TCGA-BR-6566-01 15 81429027 81429027 C A C15orf26 Silent p.P110P 0.05 TCGA-BR-6566-01 15 82336148 82336148 C T MEX3B Missense_Mutation p.G355S 0.20 tolerated(0.56) unknown(0) TCGA-BR-6566-01 15 84582089 84582089 A G ADAMTSL3 Missense_Mutation p.E649G 0.10 deleterious(0) probably_damaging(0.999) TCGA-BR-6566-01 15 85634360 85634360 A - PDE8A Frame_Shift_Del p.K269Rfs*8 0.10 TCGA-BR-6566-01 15 89862219 89862219 G C POLG Silent p.T1072T 0.06 TCGA-BR-6566-01 16 11154827 11154827 G A CLEC16A Silent p.L688L 0.06 TCGA-BR-6566-01 16 1129861 1129861 C T SSTR5 Silent p.D331D 0.12 TCGA-BR-6566-01 16 12142456 12142456 G A SNX29 Missense_Mutation p.V243M 0.20 tolerated(0.09) benign(0.009) TCGA-BR-6566-01 16 1551731 1551731 G A TELO2 Missense_Mutation p.V477I 0.17 tolerated(0.36) benign(0.001) TCGA-BR-6566-01 16 15714308 15714308 T - KIAA0430 Frame_Shift_Del p.K907Sfs*6 0.21 TCGA-BR-6566-01 16 15820795 15820797 CTT - MYH11 In_Frame_Del p.K1263del 0.20 TCGA-BR-6566-01 16 19528399 19528399 C T GDE1 Missense_Mutation p.R125Q 0.16 tolerated(0.54) benign(0.016) TCGA-BR-6566-01 16 21221474 21221474 A G ZP2 Missense_Mutation p.F64S 0.10 deleterious(0) probably_damaging(0.955) TCGA-BR-6566-01 16 2164521 2164521 G A PKD1 Missense_Mutation p.R835C 0.21 possibly_damaging(0.462) TCGA-BR-6566-01 16 23080493 23080493 G A USP31 Missense_Mutation p.P978L 0.16 tolerated_low_confidence(0.13) benign(0.003) TCGA-BR-6566-01 16 23415109 23415109 G A COG7 Missense_Mutation p.A570V 0.14 deleterious(0.04) benign(0.302) TCGA-BR-6566-01 16 23646981 23646981 T - PALB2 Frame_Shift_Del p.M296* 0.22 TCGA-BR-6566-01 16 24372735 24372735 C T CACNG3 Missense_Mutation p.R167C 0.18 deleterious(0.03) possibly_damaging(0.505) TCGA-BR-6566-01 16 2474693 2474693 C T CCNF 5'Flank 0.20 TCGA-BR-6566-01 16 27765529 27765529 C T KIAA0556 Silent p.V1196V 0.17 TCGA-BR-6566-01 16 27802759 27802759 G C GSG1L Missense_Mutation p.P310A 0.10 tolerated_low_confidence(0.97) benign(0.067) TCGA-BR-6566-01 16 28847350 28847350 G - ATXN2L Frame_Shift_Del p.Q1002Kfs*95 0.16 TCGA-BR-6566-01 16 28856346 28856346 C T TUFM Missense_Mutation p.G149S 0.30 deleterious(0.02) probably_damaging(0.937) TCGA-BR-6566-01 16 29853263 29853263 G A MVP Silent p.S488S 0.21 TCGA-BR-6566-01 16 29891335 29891335 T C SEZ6L2 Missense_Mutation p.T475A 0.06 deleterious(0) possibly_damaging(0.588) TCGA-BR-6566-01 16 30002499 30002499 G - TAOK2 3'Flank 0.19 TCGA-BR-6566-01 16 30041866 30041866 G A FAM57B 5'UTR 0.13 TCGA-BR-6566-01 16 30735442 30735442 C T SRCAP Missense_Mutation p.A1566V 0.28 possibly_damaging(0.483) TCGA-BR-6566-01 16 30768894 30768894 C T C16orf93 Missense_Mutation p.R300Q 0.19 tolerated(0.81) benign(0.007) TCGA-BR-6566-01 16 31092603 31092604 GA - ZNF646 Frame_Shift_Del p.S1655Cfs*16 0.15 TCGA-BR-6566-01 16 31131792 31131792 G A KAT8 Missense_Mutation p.R140H 0.26 deleterious(0) probably_damaging(0.994) TCGA-BR-6566-01 16 31152917 31152917 G A PRSS36 Silent p.L592L 0.25 TCGA-BR-6566-01 16 31154777 31154777 G - PRSS36 Frame_Shift_Del p.P329Rfs*12 0.16 TCGA-BR-6566-01 16 31383749 31383749 G A ITGAX Silent p.T737T 0.27 TCGA-BR-6566-01 16 31426276 31426276 G A ITGAD Silent p.V749V 0.23 TCGA-BR-6566-01 16 3190766 3190766 C T ZNF213 Silent p.S266S 0.28 TCGA-BR-6566-01 16 32890625 32890625 G A SLC6A10P RNA 0.12 TCGA-BR-6566-01 16 3293871 3293871 T C MEFV Missense_Mutation p.Q594R 0.12 tolerated(0.1) benign(0.337) TCGA-BR-6566-01 16 3349324 3349324 C A TIGD7 Nonsense_Mutation p.E431* 0.05 TCGA-BR-6566-01 16 3786719 3786719 G A CREBBP Nonsense_Mutation p.R1498* 0.04 TCGA-BR-6566-01 16 3808004 3808004 T C CREBBP Missense_Mutation p.K1139E 0.16 unknown(0) TCGA-BR-6566-01 16 4935616 4935616 G A PPL Missense_Mutation p.R1014W 0.20 deleterious(0) benign(0.021) TCGA-BR-6566-01 16 52473795 52473797 AGA - TOX3 In_Frame_Del p.L358del 0.10 TCGA-BR-6566-01 16 53720489 53720489 C G RPGRIP1L Splice_Site p.X211_splice 0.07 TCGA-BR-6566-01 16 56536710 56536710 C T BBS2 Missense_Mutation p.R272Q 0.16 deleterious(0) probably_damaging(1) TCGA-BR-6566-01 16 57713135 57713135 G A GPR97 Missense_Mutation p.R180H 0.25 tolerated(0.32) benign(0.006) TCGA-BR-6566-01 16 66600506 66600506 C T CMTM1 Silent p.S30S 0.05 TCGA-BR-6566-01 16 667245 667245 C T RAB40C Silent p.G60G 0.08 TCGA-BR-6566-01 16 67222785 67222785 G A EXOC3L1 Missense_Mutation p.A89V 0.17 deleterious(0) probably_damaging(0.984) TCGA-BR-6566-01 16 67235910 67235910 G A ELMO3 Missense_Mutation p.V414M 0.23 deleterious(0.01) benign(0.246) TCGA-BR-6566-01 16 67692248 67692248 C T ACD Missense_Mutation p.G369S 0.07 tolerated(1) benign(0.003) TCGA-BR-6566-01 16 68844099 68844099 G A CDH1 Splice_Site p.X230_splice 0.10 TCGA-BR-6566-01 16 70351442 70351442 C T DDX19B Missense_Mutation p.R114C 0.14 deleterious(0.01) possibly_damaging(0.837) TCGA-BR-6566-01 16 70384460 70384460 A C DDX19A Missense_Mutation p.M20L 0.14 tolerated(1) benign(0.001) TCGA-BR-6566-01 16 70524291 70524291 G T COG4 Missense_Mutation p.T551N 0.06 tolerated(0.11) possibly_damaging(0.672) TCGA-BR-6566-01 16 709106 709106 C - WDR90 Frame_Shift_Del p.P1013Qfs*98 0.25 TCGA-BR-6566-01 16 711649 711649 C T WDR90 Silent p.L1242L 0.05 TCGA-BR-6566-01 16 71218785 71218785 C - HYDIN Frame_Shift_Del p.E82Kfs*39 0.17 TCGA-BR-6566-01 16 715671 715671 T C WDR90 Intron 0.07 TCGA-BR-6566-01 16 71683682 71683682 G A PHLPP2 Missense_Mutation p.A1028V 0.04 tolerated(0.19) probably_damaging(0.999) TCGA-BR-6566-01 16 72138492 72138492 C T DHX38 Silent p.G706G 0.18 TCGA-BR-6566-01 16 72991559 72991559 A G ZFHX3 Missense_Mutation p.M829T 0.23 possibly_damaging(0.885) TCGA-BR-6566-01 16 72993336 72993336 G A ZFHX3 Nonsense_Mutation p.R237* 0.07 TCGA-BR-6566-01 16 81087663 81087663 A G RP11-303E16.5 5'Flank 0.06 TCGA-BR-6566-01 16 88675419 88675419 G T ZC3H18 Missense_Mutation p.R389M 0.18 deleterious_low_confidence(0) unknown(0) TCGA-BR-6566-01 17 10304654 10304654 C A MYH8 Nonsense_Mutation p.E1016* 0.22 TCGA-BR-6566-01 17 10399358 10399358 C T MYH1 Missense_Mutation p.R1693Q 0.17 deleterious(0.03) benign(0.034) TCGA-BR-6566-01 17 12847420 12847420 G A ARHGAP44 Silent p.P256P 0.25 TCGA-BR-6566-01 17 1576732 1576732 G A PRPF8 Silent p.F1192F 0.20 TCGA-BR-6566-01 17 16455348 16455348 G T ZNF287 Missense_Mutation p.P703H 0.11 deleterious(0.05) probably_damaging(0.999) TCGA-BR-6566-01 17 16526706 16526706 T - ZNF624 Frame_Shift_Del p.K498Nfs*74 0.08 TCGA-BR-6566-01 17 17030083 17030083 G A MPRIP Missense_Mutation p.R112H 0.06 deleterious(0) probably_damaging(0.984) TCGA-BR-6566-01 17 17053492 17053492 C T MPRIP Missense_Mutation p.A437V 0.04 deleterious(0.01) benign(0.023) TCGA-BR-6566-01 17 18025032 18025032 C - MYO15A Frame_Shift_Del p.T975Pfs*11 0.27 TCGA-BR-6566-01 17 18219023 18219023 C T SMCR8 5'UTR 0.17 TCGA-BR-6566-01 17 1840671 1840671 G A RTN4RL1 Missense_Mutation p.H149Y 0.23 tolerated(1) possibly_damaging(0.716) TCGA-BR-6566-01 17 1960262 1960262 C T HIC1 Missense_Mutation p.A112V 0.20 tolerated(0.2) benign(0.083) TCGA-BR-6566-01 17 1961289 1961289 G A HIC1 Silent p.A454A 0.15 TCGA-BR-6566-01 17 21101784 21101784 C T TMEM11 Silent p.S144S 0.21 TCGA-BR-6566-01 17 21207775 21207775 C T MAP2K3 Silent p.G202G 0.12 TCGA-BR-6566-01 17 2282757 2282757 C G SGSM2 Missense_Mutation p.I1033M 0.25 deleterious(0.01) probably_damaging(0.984) TCGA-BR-6566-01 17 26105983 26105983 G T NOS2 Silent p.P368P 0.22 TCGA-BR-6566-01 17 26107891 26107891 G A NOS2 Silent p.F302F 0.27 TCGA-BR-6566-01 17 26108173 26108173 A G NOS2 Silent p.S251S 0.07 TCGA-BR-6566-01 17 263291 263291 C T C17orf97 Silent p.P219P 0.30 TCGA-BR-6566-01 17 26820707 26820707 A C SLC13A2 Missense_Mutation p.S382R 0.07 deleterious(0.01) possibly_damaging(0.532) TCGA-BR-6566-01 17 27071132 27071132 T C TRAF4 Translation_Start_Site p.M1? 0.23 deleterious(0) benign(0.212) TCGA-BR-6566-01 17 27579207 27579207 G A CRYBA1 Missense_Mutation p.R114H 0.20 deleterious(0.03) benign(0.311) TCGA-BR-6566-01 17 35306443 35306443 C A AATF Silent p.P6P 0.29 TCGA-BR-6566-01 17 35921614 35921614 A C SYNRG Missense_Mutation p.I520S 0.26 deleterious(0.02) benign(0.011) TCGA-BR-6566-01 17 3629365 3629365 C T GSG2 Silent p.T712T 0.27 TCGA-BR-6566-01 17 36895090 36895090 C T PCGF2 Missense_Mutation p.R114H 0.22 deleterious(0.02) benign(0.022) TCGA-BR-6566-01 17 37650838 37650838 A G CDK12 Silent p.T770T 0.25 TCGA-BR-6566-01 17 37881000 37881000 G A ERBB2 Missense_Mutation p.V777M 0.22 tolerated(0.27) possibly_damaging(0.643) TCGA-BR-6566-01 17 38792295 38792295 T C SMARCE1 Missense_Mutation p.I143M 0.14 tolerated(0.08) benign(0.308) TCGA-BR-6566-01 17 38950122 38950122 T - KRT28 Frame_Shift_Del p.E386Kfs*8 0.23 TCGA-BR-6566-01 17 39116718 39116718 C T KRT39 Silent p.E344E 0.06 TCGA-BR-6566-01 17 39412120 39412120 C T KRTAP9-9 Silent p.S161S 0.21 TCGA-BR-6566-01 17 39525931 39525931 G - KRT33B Frame_Shift_Del p.S25Afs*17 0.19 TCGA-BR-6566-01 17 3980228 3980228 C T ZZEF1 Silent p.Q1015Q 0.17 TCGA-BR-6566-01 17 39919526 39919526 C A JUP Silent p.V402V 0.08 TCGA-BR-6566-01 17 40328259 40328259 C - KCNH4 Frame_Shift_Del p.S215Lfs*62 0.27 TCGA-BR-6566-01 17 40375517 40375517 T C STAT5B Missense_Mutation p.N145D 0.15 tolerated(0.33) benign(0.021) TCGA-BR-6566-01 17 40690692 40690692 G A NAGLU Missense_Mutation p.R228Q 0.24 tolerated(0.64) benign(0.037) TCGA-BR-6566-01 17 40723569 40723569 T C MLX Missense_Mutation p.L282P 0.23 deleterious(0) probably_damaging(0.993) TCGA-BR-6566-01 17 41020606 41020606 C - AOC4P RNA 0.20 TCGA-BR-6566-01 17 41108535 41108535 G - AARSD1 Frame_Shift_Del p.S145Lfs*2 0.18 TCGA-BR-6566-01 17 4139185 4139185 G A ANKFY1 Silent p.S110S 0.20 TCGA-BR-6566-01 17 43516967 43516967 C T PLEKHM1 Missense_Mutation p.A979T 0.18 tolerated(0.55) benign(0.006) TCGA-BR-6566-01 17 48437638 48437638 G A XYLT2 Missense_Mutation p.G862R 0.16 deleterious(0) probably_damaging(1) TCGA-BR-6566-01 17 4846555 4846555 G T RNF167 Silent p.L184L 0.18 TCGA-BR-6566-01 17 48598498 48598498 A G MYCBPAP Missense_Mutation p.Y358C 0.31 tolerated(0.16) probably_damaging(0.982) TCGA-BR-6566-01 17 4876222 4876222 G A CAMTA2 Missense_Mutation p.A805V 0.08 deleterious(0) probably_damaging(0.995) TCGA-BR-6566-01 17 48913367 48913367 G A WFIKKN2 Silent p.L23L 0.25 TCGA-BR-6566-01 17 5437297 5437297 A G NLRP1 Missense_Mutation p.V991A 0.17 tolerated(0.27) benign(0.003) TCGA-BR-6566-01 17 54939267 54939267 A G DGKE Missense_Mutation p.Y467C 0.12 tolerated(0.19) benign(0.046) TCGA-BR-6566-01 17 56276417 56276417 G A EPX Silent p.T379T 0.25 TCGA-BR-6566-01 17 56385063 56385063 A G BZRAP1 Missense_Mutation p.V1631A 0.24 deleterious(0) probably_damaging(0.999) TCGA-BR-6566-01 17 56599209 56599209 C A SEPT4 Missense_Mutation p.R283L 0.06 deleterious(0.01) probably_damaging(0.985) TCGA-BR-6566-01 17 59479054 59479054 C - TBX2 Frame_Shift_Del p.F138Sfs*17 0.12 TCGA-BR-6566-01 17 59945339 59945339 A - INTS2 Frame_Shift_Del p.F1100Lfs*26 0.27 TCGA-BR-6566-01 17 60342454 60342454 T G TBC1D3P2 3'Flank 0.05 TCGA-BR-6566-01 17 60743600 60743600 C T MRC2 Silent p.D222D 0.33 TCGA-BR-6566-01 17 61498207 61498207 G A TANC2 Missense_Mutation p.V1622I 0.17 tolerated_low_confidence(0.14) benign(0.056) TCGA-BR-6566-01 17 61744414 61744414 T C MAP3K3 Missense_Mutation p.S197P 0.07 tolerated(0.17) benign(0.003) TCGA-BR-6566-01 17 61957644 61957644 G A GH2 3'UTR 0.25 TCGA-BR-6566-01 17 62291431 62291431 C A TEX2 Missense_Mutation p.E49D 0.14 deleterious_low_confidence(0.04) probably_damaging(0.994) TCGA-BR-6566-01 17 62481966 62481966 T - POLG2 Frame_Shift_Del p.N330Mfs*9 0.15 TCGA-BR-6566-01 17 63156438 63156438 G A RGS9 Missense_Mutation p.G98D 0.21 tolerated(0.41) benign(0.002) TCGA-BR-6566-01 17 65940481 65940481 A C BPTF Silent p.T2231T 0.22 TCGA-BR-6566-01 17 6663872 6663872 G A XAF1 Missense_Mutation p.A125T 0.11 tolerated(0.15) benign(0.06) TCGA-BR-6566-01 17 6945994 6945994 C T SLC16A11 Silent p.A169A 0.45 TCGA-BR-6566-01 17 70117594 70117594 C - SOX9 Frame_Shift_Del p.S23Afs*38 0.28 TCGA-BR-6566-01 17 71426743 71426743 C T SDK2 Missense_Mutation p.R497H 0.47 tolerated(0.37) probably_damaging(0.967) TCGA-BR-6566-01 17 7186847 7186847 C T SLC2A4 Missense_Mutation p.P69L 0.12 tolerated(0.05) possibly_damaging(0.481) TCGA-BR-6566-01 17 7221114 7221114 T C NEURL4 Missense_Mutation p.N1400D 0.07 tolerated(0.12) benign(0) TCGA-BR-6566-01 17 72245498 72245498 A G TTYH2 Missense_Mutation p.Y297C 0.21 deleterious(0.03) probably_damaging(0.955) TCGA-BR-6566-01 17 72368072 72368072 C T GPR142 Missense_Mutation p.A241V 0.19 deleterious(0) probably_damaging(0.953) TCGA-BR-6566-01 17 72470778 72470778 C A CD300A Missense_Mutation p.H163N 0.20 tolerated(0.06) possibly_damaging(0.535) TCGA-BR-6566-01 17 7256534 7256534 C T KCTD11 Silent p.H91H 0.19 TCGA-BR-6566-01 17 73229063 73229063 G A NUP85 Missense_Mutation p.R505K 0.17 tolerated(0.47) benign(0.023) TCGA-BR-6566-01 17 7348741 7348741 G - CHRNB1 Intron 0.26 TCGA-BR-6566-01 17 7366640 7366640 G A ZBTB4 Missense_Mutation p.T554M 0.15 benign(0.001) TCGA-BR-6566-01 17 7369845 7369845 C T ZBTB4 Silent p.S92S 0.31 TCGA-BR-6566-01 17 73746239 73746239 C - ITGB4 Frame_Shift_Del p.P1123Lfs*37 0.18 TCGA-BR-6566-01 17 73753308 73753308 C G ITGB4 Missense_Mutation p.A1749G 0.17 tolerated(0.31) benign(0.027) TCGA-BR-6566-01 17 73997602 73997604 GAA - CDK3 In_Frame_Del p.K34del 0.31 TCGA-BR-6566-01 17 74151699 74151699 C T RNF157 Missense_Mutation p.G548R 0.21 deleterious_low_confidence(0) probably_damaging(0.912) TCGA-BR-6566-01 17 7463187 7463187 T C TNFSF12-TNFSF13 Missense_Mutation p.V201A 0.18 tolerated_low_confidence(0.13) benign(0.188) TCGA-BR-6566-01 17 7612702 7612702 G - EFNB3 Frame_Shift_Del p.G279Vfs*15 0.17 TCGA-BR-6566-01 17 77040120 77040120 C A C1QTNF1 Missense_Mutation p.L24M 0.22 deleterious_low_confidence(0.04) probably_damaging(0.996) TCGA-BR-6566-01 17 78011966 78011966 G A CCDC40 Missense_Mutation p.G25E 0.15 tolerated_low_confidence(1) benign(0.001) TCGA-BR-6566-01 17 78865595 78865595 G T RPTOR Nonsense_Mutation p.E687* 0.05 TCGA-BR-6566-01 17 79219742 79219742 C - SLC38A10 Frame_Shift_Del p.D992Tfs*50 0.18 TCGA-BR-6566-01 17 79990584 79990584 C T RAC3 Intron 0.15 TCGA-BR-6566-01 17 80788060 80788060 C T ZNF750 Silent p.T710T 0.19 TCGA-BR-6566-01 17 9395197 9395197 G A STX8 Missense_Mutation p.R164C 0.04 deleterious(0) probably_damaging(0.958) TCGA-BR-6566-01 18 12274251 12274251 A C CIDEA Missense_Mutation p.T164P 0.17 tolerated(0.1) benign(0.031) TCGA-BR-6566-01 18 12725619 12725619 T A PSMG2 3'UTR 0.25 TCGA-BR-6566-01 18 12948075 12948075 T C SEH1L 5'UTR 0.40 TCGA-BR-6566-01 18 23615812 23615813 TG - SS18 Frame_Shift_Del p.Q319Tfs*59 0.15 TCGA-BR-6566-01 18 31326030 31326030 C T ASXL3 Missense_Mutation p.T2073M 0.06 possibly_damaging(0.751) TCGA-BR-6566-01 18 3135622 3135622 C T MYOM1 Missense_Mutation p.R711H 0.09 deleterious(0.01) probably_damaging(1) TCGA-BR-6566-01 18 33077704 33077704 C T INO80C Silent p.A45A 0.17 TCGA-BR-6566-01 18 33689448 33689448 A - SLC39A6 3'UTR 0.25 TCGA-BR-6566-01 18 43440128 43440128 G A EPG5 Missense_Mutation p.A2317V 0.09 deleterious(0.01) probably_damaging(0.972) TCGA-BR-6566-01 18 43795862 43795862 G A C18orf25 Missense_Mutation p.A6T 0.25 benign(0.004) TCGA-BR-6566-01 18 47323922 47323922 G A ACAA2 Missense_Mutation p.R76C 0.20 deleterious(0.01) probably_damaging(0.987) TCGA-BR-6566-01 18 5397403 5397403 G A EPB41L3 Missense_Mutation p.S832F 0.31 tolerated(0.27) benign(0.089) TCGA-BR-6566-01 18 61225690 61225690 A - SERPINB12 Intron 0.13 TCGA-BR-6566-01 18 63477150 63477150 A G CDH7 Missense_Mutation p.I141V 0.19 tolerated(0.19) benign(0.031) TCGA-BR-6566-01 18 6997771 6997771 T C LAMA1 Silent p.S1592S 0.11 TCGA-BR-6566-01 18 70209217 70209217 A G CBLN2 Missense_Mutation p.L60P 0.13 deleterious(0) probably_damaging(0.999) TCGA-BR-6566-01 18 70461450 70461450 C A NETO1 Nonsense_Mutation p.G181* 0.25 TCGA-BR-6566-01 18 72346733 72346733 C T ZNF407 Missense_Mutation p.T1253M 0.25 tolerated(0.16) benign(0.002) TCGA-BR-6566-01 18 77170705 77170705 G A NFATC1 Missense_Mutation p.V131I 0.17 tolerated(0.22) benign(0.006) TCGA-BR-6566-01 19 1014301 1014301 C T TMEM259 Missense_Mutation p.G133S 0.16 tolerated(0.45) benign(0.003) TCGA-BR-6566-01 19 1080392 1080392 G A HMHA1 Intron 0.21 TCGA-BR-6566-01 19 10893787 10893787 G A DNM2 Silent p.T280T 0.18 TCGA-BR-6566-01 19 12461464 12461464 T C ZNF442 Missense_Mutation p.E312G 0.28 deleterious(0.04) probably_damaging(0.999) TCGA-BR-6566-01 19 12826220 12826220 G A TNPO2 Missense_Mutation p.R189W 0.19 deleterious(0) probably_damaging(0.932) TCGA-BR-6566-01 19 14272389 14272389 C T LPHN1 Silent p.T420T 0.12 TCGA-BR-6566-01 19 16178378 16178378 C A TPM4 5'UTR 0.29 TCGA-BR-6566-01 19 16631478 16631478 G A C19orf44 3'UTR 0.38 TCGA-BR-6566-01 19 16977341 16977341 A G SIN3B Missense_Mutation p.N626D 0.25 deleterious(0) possibly_damaging(0.829) TCGA-BR-6566-01 19 17450368 17450368 G A GTPBP3 Missense_Mutation p.G344R 0.13 tolerated(0.05) probably_damaging(0.962) TCGA-BR-6566-01 19 1912976 1912976 C T ADAT3 Silent p.C310C 0.23 TCGA-BR-6566-01 19 19338930 19338930 C T NCAN Missense_Mutation p.T834M 0.17 tolerated(0.1) benign(0.014) TCGA-BR-6566-01 19 19339050 19339050 C T NCAN Missense_Mutation p.T874M 0.14 tolerated(0.31) benign(0.004) TCGA-BR-6566-01 19 19371869 19371869 G A HAPLN4 Silent p.H79H 0.24 TCGA-BR-6566-01 19 19656297 19656297 C T CILP2 Silent p.P981P 0.15 TCGA-BR-6566-01 19 19766902 19766902 G A ATP13A1 Nonsense_Mutation p.Q392* 0.22 TCGA-BR-6566-01 19 20002841 20002841 G A ZNF253 Missense_Mutation p.G262D 0.20 deleterious(0.04) possibly_damaging(0.896) TCGA-BR-6566-01 19 21605806 21605806 T C ZNF493 Silent p.C115C 0.06 TCGA-BR-6566-01 19 2408410 2408410 C T TMPRSS9 Missense_Mutation p.S266L 0.26 tolerated(0.22) benign(0.005) TCGA-BR-6566-01 19 2433834 2433834 T C LMNB2 Missense_Mutation p.N491S 0.06 tolerated(0.49) benign(0.001) TCGA-BR-6566-01 19 31769867 31769867 T C TSHZ3 Missense_Mutation p.M278V 0.19 deleterious(0) probably_damaging(0.979) TCGA-BR-6566-01 19 35232234 35232234 T G ZNF181 Silent p.T316T 0.11 TCGA-BR-6566-01 19 35434229 35434229 G A ZNF30 Missense_Mutation p.R121H 0.07 tolerated(0.16) benign(0.027) TCGA-BR-6566-01 19 35500086 35500086 G A GRAMD1A Silent p.Q24Q 0.05 TCGA-BR-6566-01 19 36018665 36018665 T G SBSN Silent p.G173G 0.16 TCGA-BR-6566-01 19 36046105 36046105 A G ATP4A Silent p.D763D 0.22 TCGA-BR-6566-01 19 36050029 36050029 G A ATP4A Missense_Mutation p.A374V 0.20 deleterious(0) probably_damaging(0.997) TCGA-BR-6566-01 19 36207582 36207582 C A ZBTB32 Silent p.T464T 0.28 TCGA-BR-6566-01 19 36218451 36218451 G - KMT2B Frame_Shift_Del p.G1412Afs*10 0.25 TCGA-BR-6566-01 19 3646034 3646034 G T PIP5K1C Missense_Mutation p.P428H 0.13 deleterious(0) probably_damaging(1) TCGA-BR-6566-01 19 36510151 36510151 C T CLIP3 Missense_Mutation p.V326M 0.22 deleterious(0) possibly_damaging(0.882) TCGA-BR-6566-01 19 38057129 38057129 T C ZNF571 Silent p.S67S 0.13 TCGA-BR-6566-01 19 39234907 39234907 T C CAPN12 5'UTR 0.31 TCGA-BR-6566-01 19 39321970 39321970 G A ECH1 Missense_Mutation p.A80V 0.09 deleterious(0) probably_damaging(0.997) TCGA-BR-6566-01 19 39880926 39880926 G T PAF1 Silent p.P17P 0.44 TCGA-BR-6566-01 19 39888358 39888358 G T MED29 3'UTR 0.31 TCGA-BR-6566-01 19 40328363 40328363 G T FBL Missense_Mutation p.R224S 0.10 deleterious(0) benign(0.341) TCGA-BR-6566-01 19 42489310 42489310 C T ATP1A3 Silent p.T264T 0.08 TCGA-BR-6566-01 19 42560855 42560855 A G GRIK5 Missense_Mutation p.W288R 0.20 tolerated(0.25) probably_damaging(1) TCGA-BR-6566-01 19 42838298 42838298 G - MEGF8 Frame_Shift_Del p.G166Vfs*53 0.29 TCGA-BR-6566-01 19 4292424 4292424 C T TMIGD2 3'UTR 0.16 TCGA-BR-6566-01 19 4323414 4323414 C T FSD1 Missense_Mutation p.P454L 0.30 deleterious(0) benign(0.178) TCGA-BR-6566-01 19 44610781 44610781 C A ZNF224 Silent p.S156S 0.22 TCGA-BR-6566-01 19 45262726 45262726 C - BCL3 Frame_Shift_Del p.R409Gfs*73 0.19 TCGA-BR-6566-01 19 46002426 46002426 G A PPM1N Silent p.A232A 0.18 TCGA-BR-6566-01 19 46032599 46032599 C A OPA3 Missense_Mutation p.E86D 0.23 deleterious(0) probably_damaging(0.999) TCGA-BR-6566-01 19 46190822 46190822 C T SNRPD2 Missense_Mutation p.A116T 0.09 tolerated(0.15) benign(0.002) TCGA-BR-6566-01 19 46216383 46216383 C A FBXO46 Missense_Mutation p.W124L 0.07 deleterious(0) probably_damaging(0.954) TCGA-BR-6566-01 19 46891936 46891936 G A PPP5C Missense_Mutation p.E435K 0.10 deleterious(0) probably_damaging(0.98) TCGA-BR-6566-01 19 4929423 4929423 G A MIR4747 5'Flank 0.28 TCGA-BR-6566-01 19 50185181 50185181 C T PRMT1 Silent p.D69D 0.23 TCGA-BR-6566-01 19 50360274 50360274 C T PTOV1 Missense_Mutation p.R201C 0.21 deleterious(0) benign(0.437) TCGA-BR-6566-01 19 50363330 50363330 G T PTOV1 Missense_Mutation p.G377C 0.07 deleterious(0) probably_damaging(0.997) TCGA-BR-6566-01 19 50384662 50384662 G A TBC1D17 Missense_Mutation p.A153T 0.05 tolerated(0.18) probably_damaging(0.987) TCGA-BR-6566-01 19 50549654 50549654 G A ZNF473 Missense_Mutation p.G652R 0.26 deleterious(0.02) probably_damaging(0.982) TCGA-BR-6566-01 19 51021694 51021694 C T LRRC4B Missense_Mutation p.V426I 0.19 deleterious(0) possibly_damaging(0.851) TCGA-BR-6566-01 19 51506431 51506431 C T KLK9 Missense_Mutation p.R230H 0.09 deleterious(0.02) benign(0.034) TCGA-BR-6566-01 19 51769106 51769106 C T SIGLECL1 Missense_Mutation p.A127V 0.10 deleterious(0.04) benign(0.003) TCGA-BR-6566-01 19 51875430 51875430 C T NKG7 Missense_Mutation p.A97T 0.11 tolerated(1) benign(0.002) TCGA-BR-6566-01 19 52570189 52570189 G A ZNF841 Missense_Mutation p.P316S 0.12 tolerated(0.06) probably_damaging(0.999) TCGA-BR-6566-01 19 52719794 52719794 G A PPP2R1A Missense_Mutation p.D336N 0.29 deleterious(0) probably_damaging(0.994) TCGA-BR-6566-01 19 53344851 53344851 T - ZNF468 Frame_Shift_Del p.K232Nfs*4 0.16 TCGA-BR-6566-01 19 54445626 54445626 C A CACNG7 3'UTR 0.24 TCGA-BR-6566-01 19 54710190 54710190 G T RPS9 Missense_Mutation p.E89D 0.23 tolerated(0.06) benign(0.048) TCGA-BR-6566-01 19 55855161 55855161 G A SUV420H2 Missense_Mutation p.R167H 0.25 deleterious(0) probably_damaging(0.914) TCGA-BR-6566-01 19 5590402 5590402 G A SAFB2 Silent p.R804R 0.12 TCGA-BR-6566-01 19 55994109 55994109 C A ZNF628 Missense_Mutation p.L517I 0.23 tolerated(0.06) probably_damaging(0.953) TCGA-BR-6566-01 19 56163822 56163822 C A CCDC106 Silent p.R185R 0.16 TCGA-BR-6566-01 19 56423266 56423266 A - NLRP13 Frame_Shift_Del p.H640Tfs*39 0.18 TCGA-BR-6566-01 19 56549538 56549538 C T NLRP5 Silent p.S921S 0.33 TCGA-BR-6566-01 19 56600242 56600242 C T ZNF787 Missense_Mutation p.G100D 0.08 deleterious(0) probably_damaging(0.999) TCGA-BR-6566-01 19 56733037 56733037 T G ZSCAN5A Missense_Mutation p.K466N 0.20 deleterious(0) probably_damaging(0.959) TCGA-BR-6566-01 19 56953681 56953681 A C ZNF667 Missense_Mutation p.L228R 0.16 tolerated(0.34) benign(0.077) TCGA-BR-6566-01 19 58083498 58083498 T C ZNF416 Missense_Mutation p.N592D 0.05 tolerated(0.61) benign(0.001) TCGA-BR-6566-01 19 58983336 58983336 C T ZNF324 Missense_Mutation p.R493C 0.10 deleterious(0.02) probably_damaging(0.998) TCGA-BR-6566-01 19 8137014 8137014 G A FBN3 Missense_Mutation p.S2669L 0.16 deleterious(0) benign(0.409) TCGA-BR-6566-01 19 8464825 8464825 G T RAB11B Missense_Mutation p.S40I 0.11 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-BR-6566-01 19 8548060 8548060 T C HNRNPM Missense_Mutation p.L380P 0.15 deleterious(0.05) benign(0.216) TCGA-BR-6566-01 19 877145 877145 G A MED16 Silent p.H463H 0.29 TCGA-BR-6566-01 19 9049102 9049103 - A MUC16 Frame_Shift_Ins p.H10844Pfs*2 0.16 TCGA-BR-6566-01 19 9362135 9362135 A T OR7E24 Missense_Mutation p.D139V 0.22 deleterious(0) possibly_damaging(0.84) TCGA-BR-6566-01 1 100818483 100818483 G A CDC14A 5'UTR 0.17 TCGA-BR-6566-01 1 101456138 101456138 G A DPH5 Silent p.D228D 0.21 TCGA-BR-6566-01 1 107691419 107691419 G A NTNG1 Silent p.P68P 0.21 TCGA-BR-6566-01 1 110301215 110301215 T C EPS8L3 Missense_Mutation p.M179V 0.07 tolerated(1) benign(0.001) TCGA-BR-6566-01 1 111490937 111490937 C T LRIF1 Missense_Mutation p.A652T 0.16 tolerated(1) benign(0) TCGA-BR-6566-01 1 112308658 112308658 T C DDX20 Missense_Mutation p.C538R 0.05 tolerated(0.09) benign(0.001) TCGA-BR-6566-01 1 114354926 114354926 C - RSBN1 Frame_Shift_Del p.A37Rfs*22 0.23 TCGA-BR-6566-01 1 115537402 115537402 A - SYCP1 Frame_Shift_Del p.K931Rfs*6 0.13 TCGA-BR-6566-01 1 118609480 118609480 A G SPAG17 Missense_Mutation p.Y810H 0.13 deleterious(0) probably_damaging(0.988) TCGA-BR-6566-01 1 12335954 12335954 C - VPS13D Frame_Shift_Del p.L772Wfs*37 0.16 TCGA-BR-6566-01 1 12806445 12806445 T C C1orf158 Missense_Mutation p.S23P 0.07 deleterious(0) probably_damaging(0.999) TCGA-BR-6566-01 1 1421563 1421563 G T ATAD3B Missense_Mutation p.R346M 0.19 deleterious(0) probably_damaging(0.967) TCGA-BR-6566-01 1 147380281 147380281 G A GJA8 Missense_Mutation p.D67N 0.27 deleterious(0) probably_damaging(0.981) TCGA-BR-6566-01 1 149398890 149398890 G A HIST2H3PS2 3'Flank 0.10 TCGA-BR-6566-01 1 151378226 151378226 C A POGZ Missense_Mutation p.K1095N 0.26 tolerated(0.06) probably_damaging(0.996) TCGA-BR-6566-01 1 152080709 152080709 G A TCHH Missense_Mutation p.R1662C 0.09 unknown(0) TCGA-BR-6566-01 1 152280923 152280923 C G FLG Missense_Mutation p.G2147R 0.25 probably_damaging(0.953) TCGA-BR-6566-01 1 153233517 153233517 G A LOR Missense_Mutation p.G31D 0.12 unknown(0) TCGA-BR-6566-01 1 153283175 153283175 C T PGLYRP3 5'UTR 0.21 TCGA-BR-6566-01 1 153642708 153642708 T C ILF2 Splice_Site p.X2_splice 0.23 TCGA-BR-6566-01 1 153730152 153730153 - G INTS3 Frame_Shift_Ins p.V356Gfs*6 0.23 TCGA-BR-6566-01 1 153907329 153907329 G A DENND4B Missense_Mutation p.R894W 0.18 deleterious(0.02) possibly_damaging(0.564) TCGA-BR-6566-01 1 154932071 154932071 G - PYGO2 Frame_Shift_Del p.F136Sfs*25 0.23 TCGA-BR-6566-01 1 155531921 155531921 C T ASH1L Intron 0.11 TCGA-BR-6566-01 1 155911718 155911718 G A RXFP4 Missense_Mutation p.G73D 0.28 tolerated(0.38) benign(0.172) TCGA-BR-6566-01 1 156235649 156235649 T C SMG5 Missense_Mutation p.Q593R 0.14 tolerated(0.76) benign(0.077) TCGA-BR-6566-01 1 156235910 156235910 G A SMG5 Missense_Mutation p.T506M 0.25 deleterious(0) possibly_damaging(0.495) TCGA-BR-6566-01 1 156563292 156563292 C T APOA1BP Silent p.I203I 0.19 TCGA-BR-6566-01 1 156875185 156875185 T C PEAR1 Silent p.H92H 0.09 TCGA-BR-6566-01 1 157804431 157804431 C T CD5L Missense_Mutation p.V162M 0.22 deleterious(0.02) possibly_damaging(0.655) TCGA-BR-6566-01 1 158152844 158152844 T C CD1D Missense_Mutation p.Y262H 0.14 deleterious(0.03) possibly_damaging(0.691) TCGA-BR-6566-01 1 158632648 158632648 A G SPTA1 Missense_Mutation p.S770P 0.15 deleterious(0.04) possibly_damaging(0.782) TCGA-BR-6566-01 1 158687066 158687066 A G OR6K3 Silent p.L280L 0.18 TCGA-BR-6566-01 1 160208501 160208501 C T DCAF8 Missense_Mutation p.A254T 0.24 deleterious(0.01) possibly_damaging(0.551) TCGA-BR-6566-01 1 161143511 161143511 C T B4GALT3 Silent p.P229P 0.06 TCGA-BR-6566-01 1 161695837 161695837 C T FCRLB Silent p.S178S 0.30 TCGA-BR-6566-01 1 16258904 16258904 A G SPEN Missense_Mutation p.T2057A 0.08 benign(0.002) TCGA-BR-6566-01 1 162769680 162769680 G A HSD17B7 Missense_Mutation p.A199T 0.24 tolerated(0.06) possibly_damaging(0.612) TCGA-BR-6566-01 1 165386448 165386448 T C RXRG Missense_Mutation p.Y151C 0.30 deleterious(0) probably_damaging(1) TCGA-BR-6566-01 1 167385147 167385147 G A POU2F1 3'UTR 0.32 TCGA-BR-6566-01 1 167400877 167400877 G A CD247 3'UTR 0.11 TCGA-BR-6566-01 1 167511447 167511447 G A CREG1 3'UTR 0.08 TCGA-BR-6566-01 1 1685737 1685737 G A NADK Missense_Mutation p.T455M 0.15 deleterious(0) possibly_damaging(0.835) TCGA-BR-6566-01 1 171605701 171605701 C T MYOC Silent p.T293T 0.09 TCGA-BR-6566-01 1 177927333 177927333 G - SEC16B Frame_Shift_Del p.S434Vfs*29 0.24 TCGA-BR-6566-01 1 179077893 179077894 - T ABL2 Frame_Shift_Ins p.S837Ifs*55 0.12 TCGA-BR-6566-01 1 179620102 179620102 T - TDRD5 Frame_Shift_Del p.L636Cfs*16 0.14 TCGA-BR-6566-01 1 184686655 184686676 ATGGGGTATATTTTCTTACTTT - EDEM3 Splice_Site p.X415_splice 0.22 TCGA-BR-6566-01 1 185267231 185267231 G A IVNS1ABP Missense_Mutation p.T622M 0.24 deleterious(0) probably_damaging(0.971) TCGA-BR-6566-01 1 192128397 192128397 A T RGS18 Missense_Mutation p.E56V 0.19 deleterious(0.03) benign(0.059) TCGA-BR-6566-01 1 19449413 19449413 G A UBR4 Silent p.L3244L 0.07 TCGA-BR-6566-01 1 196762526 196762526 A - CFHR3 Frame_Shift_Del p.T294Qfs*30 0.22 TCGA-BR-6566-01 1 200973959 200973959 G A KIF21B Missense_Mutation p.R279W 0.30 deleterious(0) possibly_damaging(0.865) TCGA-BR-6566-01 1 201058527 201058527 C T CACNA1S Silent p.R253R 0.21 TCGA-BR-6566-01 1 202097020 202097020 C T GPR37L1 Missense_Mutation p.T261M 0.19 tolerated(0.13) benign(0.06) TCGA-BR-6566-01 1 204228411 204228411 C - PLEKHA6 Frame_Shift_Del p.V328Yfs*172 0.23 TCGA-BR-6566-01 1 205117339 205117339 G A DSTYK Missense_Mutation p.R866W 0.27 deleterious(0) probably_damaging(0.991) TCGA-BR-6566-01 1 207269950 207269950 T C C4BPB Missense_Mutation p.C165R 0.20 deleterious(0) probably_damaging(1) TCGA-BR-6566-01 1 211652526 211652526 C T RD3 Missense_Mutation p.R147H 0.18 deleterious(0.02) benign(0.016) TCGA-BR-6566-01 1 211748999 211748999 G A SLC30A1 Missense_Mutation p.P419S 0.24 deleterious(0) probably_damaging(1) TCGA-BR-6566-01 1 214705734 214705734 C G PTPN14 Intron 0.09 TCGA-BR-6566-01 1 214813766 214813766 C A CENPF Silent p.T695T 0.07 TCGA-BR-6566-01 1 221053526 221053526 G A HLX Silent p.P109P 0.17 TCGA-BR-6566-01 1 221875745 221875745 A G DUSP10 3'UTR 0.17 TCGA-BR-6566-01 1 223177225 223177225 A G DISP1 Missense_Mutation p.H829R 0.26 tolerated(0.63) benign(0) TCGA-BR-6566-01 1 223286273 223286273 C T TLR5 Missense_Mutation p.R34H 0.13 tolerated(0.57) benign(0.008) TCGA-BR-6566-01 1 22332438 22332438 C A CELA3A Intron 0.12 TCGA-BR-6566-01 1 228447426 228447426 T C OBSCN Missense_Mutation p.Y1696H 0.14 benign(0.235) TCGA-BR-6566-01 1 228475418 228475418 G A OBSCN Missense_Mutation p.A3619T 0.22 benign(0.055) TCGA-BR-6566-01 1 228554800 228554800 G A OBSCN Missense_Mutation p.A7475T 0.17 benign(0.005) TCGA-BR-6566-01 1 22974057 22974057 G A C1QC Silent p.S173S 0.13 TCGA-BR-6566-01 1 231471552 231471552 A G EXOC8 Missense_Mutation p.L647P 0.08 deleterious(0) probably_damaging(0.979) TCGA-BR-6566-01 1 23418649 23418649 G T LUZP1 Silent p.T702T 0.04 TCGA-BR-6566-01 1 236228195 236228195 G A NID1 Missense_Mutation p.A62V 0.08 deleterious(0.02) benign(0.005) TCGA-BR-6566-01 1 238048859 238048859 T C ZP4 Missense_Mutation p.Y331C 0.07 deleterious(0) probably_damaging(0.998) TCGA-BR-6566-01 1 24484052 24484052 G A IFNLR1 Silent p.S377S 0.33 TCGA-BR-6566-01 1 245704075 245704075 C A KIF26B Silent p.A391A 0.16 TCGA-BR-6566-01 1 25254159 25254159 C A RUNX3 Missense_Mutation p.E129D 0.15 deleterious(0.02) probably_damaging(0.972) TCGA-BR-6566-01 1 26135608 26135608 C A SEPN1 Missense_Mutation p.A280D 0.22 deleterious(0) probably_damaging(0.945) TCGA-BR-6566-01 1 26524495 26524495 G A CATSPER4 Missense_Mutation p.R202Q 0.18 tolerated(0.1) benign(0.379) TCGA-BR-6566-01 1 29652235 29652235 C T PTPRU 3'Flank 0.31 TCGA-BR-6566-01 1 32628122 32628122 T C KPNA6 Missense_Mutation p.L303P 0.09 deleterious(0) probably_damaging(1) TCGA-BR-6566-01 1 33623854 33623854 C A TRIM62 Missense_Mutation p.V293L 0.14 deleterious(0.01) benign(0.006) TCGA-BR-6566-01 1 36031043 36031043 G A NCDN Missense_Mutation p.A657T 0.21 tolerated(0.36) benign(0.006) TCGA-BR-6566-01 1 36306800 36306800 G T AGO4 Nonsense_Mutation p.G587* 0.20 TCGA-BR-6566-01 1 36520603 36520603 A G AGO3 Silent p.A777A 0.17 TCGA-BR-6566-01 1 40098329 40098329 G A HEYL Missense_Mutation p.H47Y 0.05 deleterious(0) benign(0.187) TCGA-BR-6566-01 1 40149756 40149756 G A HPCAL4 Silent p.D77D 0.11 TCGA-BR-6566-01 1 40705239 40705239 G A RLF Missense_Mutation p.R1622H 0.24 tolerated(0.65) benign(0) TCGA-BR-6566-01 1 42880412 42880412 C A RIMKLA Missense_Mutation p.P315T 0.18 tolerated_low_confidence(0.37) benign(0.265) TCGA-BR-6566-01 1 43282114 43282115 TC - CCDC23 Frame_Shift_Del p.R34Tfs*21 0.08 TCGA-BR-6566-01 1 43889992 43889992 C T SZT2 Missense_Mutation p.A787V 0.08 deleterious(0.02) probably_damaging(0.927) TCGA-BR-6566-01 1 45288194 45288194 G - PTCH2 Frame_Shift_Del p.L1169Cfs*85 0.25 TCGA-BR-6566-01 1 45484698 45484698 T C ZSWIM5 Missense_Mutation p.T996A 0.25 tolerated(0.57) unknown(0) TCGA-BR-6566-01 1 4832466 4832466 G A AJAP1 Silent p.T348T 0.20 TCGA-BR-6566-01 1 52705193 52705193 G A ZFYVE9 Missense_Mutation p.A702T 0.11 tolerated(0.07) probably_damaging(1) TCGA-BR-6566-01 1 52911986 52911986 C T ZCCHC11 Silent p.L1214L 0.14 TCGA-BR-6566-01 1 55197241 55197241 G T TTC4 Missense_Mutation p.G255V 0.36 deleterious(0.02) benign(0.104) TCGA-BR-6566-01 1 55273338 55273338 C T C1orf177 Missense_Mutation p.A111V 0.20 tolerated(0.22) benign(0.009) TCGA-BR-6566-01 1 63998360 63998360 G A EFCAB7 Missense_Mutation p.R140Q 0.20 tolerated(0.62) benign(0.002) TCGA-BR-6566-01 1 65323423 65323423 G A JAK1 Silent p.S458S 0.09 TCGA-BR-6566-01 1 72241870 72241870 G A NEGR1 Missense_Mutation p.H174Y 0.12 tolerated(0.12) possibly_damaging(0.512) TCGA-BR-6566-01 1 89408705 89408705 G A CCBL2 Missense_Mutation p.R429C 0.12 deleterious(0) probably_damaging(1) TCGA-BR-6566-01 1 89730595 89730595 G T GBP5 Missense_Mutation p.P308H 0.11 deleterious(0) probably_damaging(1) TCGA-BR-6566-01 1 89732816 89732816 T C GBP5 Missense_Mutation p.D150G 0.17 tolerated(0.07) benign(0.071) TCGA-BR-6566-01 1 900386 900386 G A KLHL17 Missense_Mutation p.V582M 0.15 deleterious(0) probably_damaging(0.99) TCGA-BR-6566-01 1 90399510 90399510 C T LRRC8D Missense_Mutation p.R295C 0.11 deleterious(0) probably_damaging(1) TCGA-BR-6566-01 1 92811469 92811469 A G RPAP2 Silent p.S562S 0.10 TCGA-BR-6566-01 1 92979207 92979207 T C EVI5 3'UTR 0.12 TCGA-BR-6566-01 1 94476454 94476454 C A ABCA4 Missense_Mutation p.W1872C 0.20 deleterious(0) probably_damaging(1) TCGA-BR-6566-01 1 977059 977059 G A AGRN Missense_Mutation p.R385H 0.27 tolerated(0.34) benign(0.4) TCGA-BR-6566-01 1 9795576 9795576 C T CLSTN1 Missense_Mutation p.R611Q 0.24 tolerated(0.07) probably_damaging(0.998) TCGA-BR-6566-01 20 2397897 2397897 G A TGM6 Silent p.Q452Q 0.44 TCGA-BR-6566-01 20 2464827 2464827 C T ZNF343 Silent p.P260P 0.28 TCGA-BR-6566-01 20 30733169 30733169 G A TM9SF4 Missense_Mutation p.V276I 0.38 tolerated(0.2) benign(0.344) TCGA-BR-6566-01 20 32439984 32439984 C A CHMP4B Silent p.P195P 0.08 TCGA-BR-6566-01 20 32883286 32883286 A C AHCY Missense_Mutation p.L45R 0.12 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BR-6566-01 20 33345744 33345744 C T NCOA6 Silent p.Q269Q 0.42 TCGA-BR-6566-01 20 34240428 34240428 A - RBM12 3'UTR 0.31 TCGA-BR-6566-01 20 34243085 34243085 T C RBM12 Missense_Mutation p.R54G 0.07 deleterious(0) unknown(0) TCGA-BR-6566-01 20 35176475 35176475 C T MYL9 Silent p.S75S 0.08 TCGA-BR-6566-01 20 37555035 37555035 C - FAM83D Frame_Shift_Del p.R14Gfs*77 0.32 TCGA-BR-6566-01 20 43851236 43851236 A C SEMG2 Missense_Mutation p.K321N 0.08 tolerated(0.06) probably_damaging(0.994) TCGA-BR-6566-01 20 43933091 43933091 A G MATN4 Silent p.R140R 0.14 TCGA-BR-6566-01 20 48503419 48503419 G A SLC9A8 Missense_Mutation p.R557Q 0.33 deleterious(0) probably_damaging(0.989) TCGA-BR-6566-01 20 55100911 55100911 A - FAM209A Frame_Shift_Del p.R103Efs*14 0.28 TCGA-BR-6566-01 20 56138681 56138681 G A PCK1 Missense_Mutation p.A287T 0.34 deleterious(0) probably_damaging(0.995) TCGA-BR-6566-01 20 57227154 57227154 A G STX16 Missense_Mutation p.H31R 0.09 tolerated_low_confidence(0.13) benign(0.001) TCGA-BR-6566-01 20 57561169 57561169 G T NELFCD Nonsense_Mutation p.G46* 0.04 TCGA-BR-6566-01 20 60714232 60714232 G A PSMA7 Missense_Mutation p.R124C 0.10 tolerated(0.09) benign(0.265) TCGA-BR-6566-01 20 6088264 6088264 C T FERMT1 Missense_Mutation p.R255H 0.40 deleterious(0.03) benign(0.178) TCGA-BR-6566-01 20 62366010 62366010 C T ZGPAT Silent p.D295D 0.34 TCGA-BR-6566-01 21 10942730 10942730 T G TPTE Silent p.L237L 0.05 TCGA-BR-6566-01 21 14982981 14982981 C A POTED Missense_Mutation p.H144Q 0.10 deleterious(0) probably_damaging(0.998) TCGA-BR-6566-01 21 27328060 27328060 C T APP Missense_Mutation p.V490M 0.14 deleterious(0) probably_damaging(0.995) TCGA-BR-6566-01 21 32595734 32595734 C T TIAM1 Silent p.S661S 0.20 TCGA-BR-6566-01 21 34697376 34697376 C A IFNAR1 Missense_Mutation p.L6M 0.24 deleterious(0.04) unknown(0) TCGA-BR-6566-01 21 39775628 39775628 G T ERG Missense_Mutation p.P138H 0.06 deleterious(0) probably_damaging(0.997) TCGA-BR-6566-01 21 43496242 43496242 C T UMODL1 Missense_Mutation p.R69W 0.14 tolerated(0.06) possibly_damaging(0.835) TCGA-BR-6566-01 21 43529775 43529775 C T UMODL1 Silent p.D541D 0.16 TCGA-BR-6566-01 21 44476174 44476175 - C CBS Intron 0.16 TCGA-BR-6566-01 21 47626622 47626623 - C LSS Frame_Shift_Ins p.H510Afs*18 0.18 TCGA-BR-6566-01 21 47722461 47722461 C T C21orf58 Missense_Mutation p.A251T 0.11 deleterious(0) probably_damaging(0.998) TCGA-BR-6566-01 22 18220977 18220977 C T BID Missense_Mutation p.A174T 0.21 tolerated(0.06) possibly_damaging(0.677) TCGA-BR-6566-01 22 19398267 19398267 G A HIRA Silent p.D24D 0.25 TCGA-BR-6566-01 22 19511108 19511108 C T CLDN5 3'UTR 0.16 TCGA-BR-6566-01 22 20050943 20050943 C T TANGO2 Missense_Mutation p.R230C 0.20 deleterious(0) probably_damaging(0.993) TCGA-BR-6566-01 22 20749701 20749701 G A ZNF74 Missense_Mutation p.R38K 0.19 tolerated(0.42) benign(0.002) TCGA-BR-6566-01 22 21161703 21161703 G T PI4KA Missense_Mutation p.P372H 0.10 deleterious(0.02) benign(0.375) TCGA-BR-6566-01 22 24035184 24035184 C T RGL4 Intron 0.26 TCGA-BR-6566-01 22 24180574 24180574 C T DERL3 Missense_Mutation p.V98I 0.25 tolerated(0.08) benign(0.08) TCGA-BR-6566-01 22 24236713 24236713 G T MIF Missense_Mutation p.G18W 0.09 deleterious(0.01) probably_damaging(0.944) TCGA-BR-6566-01 22 24530289 24530289 C T CABIN1 Silent p.D1551D 0.20 TCGA-BR-6566-01 22 25598726 25598726 A C CRYBB3 Missense_Mutation p.E54A 0.20 deleterious(0.01) possibly_damaging(0.489) TCGA-BR-6566-01 22 29668385 29668385 G A EWSR1 Missense_Mutation p.A23T 0.26 tolerated_low_confidence(0.13) benign(0.312) TCGA-BR-6566-01 22 30730545 30730545 G T SF3A1 3'UTR 0.07 TCGA-BR-6566-01 22 31823111 31823111 C T DRG1 Missense_Mutation p.T316I 0.04 tolerated(0.23) benign(0.008) TCGA-BR-6566-01 22 31859034 31859034 G A EIF4ENIF1 Missense_Mutation p.A224V 0.11 deleterious(0.02) probably_damaging(0.996) TCGA-BR-6566-01 22 32015676 32015676 G A PISD Silent p.F350F 0.17 TCGA-BR-6566-01 22 33670462 33670462 C T LARGE Missense_Mutation p.R741H 0.19 tolerated(0.25) benign(0.015) TCGA-BR-6566-01 22 36236345 36236346 CC - RBFOX2 Intron 0.27 TCGA-BR-6566-01 22 37480395 37480395 A G TMPRSS6 Missense_Mutation p.L388P 0.17 deleterious(0) probably_damaging(0.933) TCGA-BR-6566-01 22 37769104 37769104 G - ELFN2 3'UTR 0.32 TCGA-BR-6566-01 22 38130773 38130773 G - TRIOBP Frame_Shift_Del p.G1479Afs*28 0.20 TCGA-BR-6566-01 22 39621767 39621767 C T PDGFB Silent p.T229T 0.14 TCGA-BR-6566-01 22 39884484 39884484 G A MGAT3 Missense_Mutation p.G378S 0.22 tolerated(0.34) benign(0.134) TCGA-BR-6566-01 22 40814585 40814585 C T MKL1 Silent p.P619P 0.23 TCGA-BR-6566-01 22 41556645 41556645 G T EP300 Splice_Site p.X1197_splice 0.13 TCGA-BR-6566-01 22 44379812 44379812 G T SAMM50 Splice_Site p.X336_splice 0.09 TCGA-BR-6566-01 22 45681923 45681923 A G UPK3A Missense_Mutation p.K52E 0.18 tolerated(0.11) benign(0.02) TCGA-BR-6566-01 22 45944543 45944543 T C FBLN1 Missense_Mutation p.C498R 0.27 deleterious(0) probably_damaging(0.962) TCGA-BR-6566-01 22 50617614 50617614 G A PANX2 Missense_Mutation p.V648M 0.17 tolerated_low_confidence(0.35) benign(0.004) TCGA-BR-6566-01 2 100199306 100199306 T - AFF3 Frame_Shift_Del p.K941Sfs*72 0.10 TCGA-BR-6566-01 2 100916256 100916256 G A LONRF2 Missense_Mutation p.A397V 0.10 tolerated(0.29) benign(0.024) TCGA-BR-6566-01 2 10192518 10192518 C T KLF11 Missense_Mutation p.R475C 0.26 deleterious(0.01) probably_damaging(1) TCGA-BR-6566-01 2 103334978 103334978 G - MFSD9 Frame_Shift_Del p.S443Afs*6 0.29 TCGA-BR-6566-01 2 109086477 109086477 A - GCC2 Frame_Shift_Del p.N233Ifs*12 0.25 TCGA-BR-6566-01 2 109369912 109369912 G A RANBP2 Missense_Mutation p.A650T 0.09 deleterious(0.03) benign(0.136) TCGA-BR-6566-01 2 11053586 11053586 T C KCNF1 Missense_Mutation p.M345T 0.17 deleterious(0.04) benign(0.438) TCGA-BR-6566-01 2 112940466 112940466 G A FBLN7 Missense_Mutation p.G257S 0.31 tolerated(1) benign(0) TCGA-BR-6566-01 2 11348480 11348480 C T ROCK2 Missense_Mutation p.C766Y 0.18 tolerated(0.34) benign(0.002) TCGA-BR-6566-01 2 11702638 11702638 G A GREB1 Silent p.G69G 0.28 TCGA-BR-6566-01 2 11750942 11750942 C T GREB1 Missense_Mutation p.T932M 0.06 tolerated(0.71) probably_damaging(0.944) TCGA-BR-6566-01 2 118766148 118766148 T C CCDC93 Silent p.R43R 0.05 TCGA-BR-6566-01 2 1241712 1241712 C T SNTG2 Missense_Mutation p.R258W 0.27 deleterious(0.03) benign(0.001) TCGA-BR-6566-01 2 133540357 133540357 C A NCKAP5 Missense_Mutation p.G1343W 0.23 tolerated(0.06) probably_damaging(0.969) TCGA-BR-6566-01 2 133887625 133887625 T - NCKAP5 Frame_Shift_Del p.K89Sfs*6 0.19 TCGA-BR-6566-01 2 135744541 135744541 G A MAP3K19 Missense_Mutation p.P634L 0.18 tolerated(0.5) benign(0.007) TCGA-BR-6566-01 2 136029371 136029371 G A ZRANB3 Silent p.R391R 0.21 TCGA-BR-6566-01 2 141202148 141202148 A G LRP1B Silent p.S3386S 0.39 TCGA-BR-6566-01 2 141625740 141625740 A G LRP1B Missense_Mutation p.M1421T 0.23 benign(0.149) TCGA-BR-6566-01 2 145153986 145153986 T C ZEB2 Silent p.E1020E 0.31 TCGA-BR-6566-01 2 148683686 148683686 A - ACVR2A Frame_Shift_Del p.K437Rfs*5 0.42 TCGA-BR-6566-01 2 15415645 15415645 A G NBAS Missense_Mutation p.V1896A 0.06 tolerated(0.22) benign(0.05) TCGA-BR-6566-01 2 15557796 15557796 C T NBAS Missense_Mutation p.R873Q 0.14 deleterious(0.02) probably_damaging(0.998) TCGA-BR-6566-01 2 157184520 157184520 C T NR4A2 Missense_Mutation p.R334H 0.31 deleterious(0) probably_damaging(0.999) TCGA-BR-6566-01 2 160289669 160289669 C A BAZ2B Missense_Mutation p.S500I 0.08 benign(0.403) TCGA-BR-6566-01 2 1642695 1642695 A C PXDN Missense_Mutation p.S1377A 0.22 tolerated(0.81) benign(0) TCGA-BR-6566-01 2 164467050 164467050 C A FIGN Missense_Mutation p.G431V 0.28 tolerated(0.09) benign(0.002) TCGA-BR-6566-01 2 1647230 1647230 C T PXDN Missense_Mutation p.V1288M 0.11 deleterious(0) probably_damaging(0.968) TCGA-BR-6566-01 2 1652618 1652618 G T PXDN Silent p.A978A 0.25 TCGA-BR-6566-01 2 167313548 167313548 A - SCN7A Frame_Shift_Del p.F374Lfs*4 0.25 TCGA-BR-6566-01 2 168726164 168726164 C T B3GALT1 Silent p.G205G 0.38 TCGA-BR-6566-01 2 170104000 170104000 T A LRP2 Missense_Mutation p.R932S 0.31 possibly_damaging(0.616) TCGA-BR-6566-01 2 17699599 17699599 G T RAD51AP2 Silent p.S28S 0.19 TCGA-BR-6566-01 2 17888597 17888597 T - SMC6 Frame_Shift_Del p.N632Ifs*29 0.27 TCGA-BR-6566-01 2 179247919 179247919 A G OSBPL6 Missense_Mutation p.N622S 0.09 tolerated(0.13) probably_damaging(0.998) TCGA-BR-6566-01 2 179410360 179410360 A G TTN Missense_Mutation p.I31826T 0.20 TCGA-BR-6566-01 2 179413378 179413378 C A TTN Missense_Mutation p.G30992V 0.20 TCGA-BR-6566-01 2 179427507 179427507 C T TTN Silent p.T27784T 0.10 TCGA-BR-6566-01 2 179544699 179544699 C T TTN Missense_Mutation p.E11168K 0.19 TCGA-BR-6566-01 2 179659863 179659863 G - TTN Frame_Shift_Del p.P344Lfs*16 0.14 TCGA-BR-6566-01 2 180830644 180830644 C T CWC22 Missense_Mutation p.E426K 0.11 deleterious(0.02) benign(0.044) TCGA-BR-6566-01 2 182928520 182928520 T C PPP1R1C Splice_Site p.X88_splice 0.33 TCGA-BR-6566-01 2 191301681 191301681 T C MFSD6 Missense_Mutation p.V309A 0.08 tolerated(0.52) benign(0.12) TCGA-BR-6566-01 2 197729777 197729777 G A PGAP1 Missense_Mutation p.P599S 0.17 deleterious(0) probably_damaging(0.996) TCGA-BR-6566-01 2 201478593 201478593 C T AOX1 Silent p.G505G 0.07 TCGA-BR-6566-01 2 202546262 202546262 T G MPP4 Missense_Mutation p.K230T 0.23 deleterious(0) probably_damaging(0.978) TCGA-BR-6566-01 2 202900082 202900082 C T FZD7 Missense_Mutation p.R238C 0.14 deleterious(0.03) possibly_damaging(0.776) TCGA-BR-6566-01 2 206991509 206991509 T G NDUFS1 Missense_Mutation p.E662D 0.36 tolerated(0.23) benign(0.016) TCGA-BR-6566-01 2 208618400 208618400 G A CCNYL1 Missense_Mutation p.R302H 0.32 tolerated(0.58) benign(0.03) TCGA-BR-6566-01 2 210658516 210658516 C T UNC80 Nonsense_Mutation p.R291* 0.10 TCGA-BR-6566-01 2 21231016 21231016 G A APOB Silent p.N2908N 0.11 TCGA-BR-6566-01 2 215275043 215275043 T C SPAG16 3'UTR 0.32 TCGA-BR-6566-01 2 215646085 215646085 T - BARD1 Frame_Shift_Del p.D172Mfs*40 0.11 TCGA-BR-6566-01 2 216214418 216214418 T C ATIC 3'UTR 0.16 TCGA-BR-6566-01 2 219130406 219130406 C A AAMP Splice_Site p.X294_splice 0.05 TCGA-BR-6566-01 2 219674400 219674400 G A CYP27A1 Missense_Mutation p.R119Q 0.38 deleterious(0.02) probably_damaging(0.972) TCGA-BR-6566-01 2 219920330 219920330 T C IHH Missense_Mutation p.T279A 0.08 tolerated(0.19) benign(0.005) TCGA-BR-6566-01 2 220409409 220409409 A G TMEM198 Intron 0.30 TCGA-BR-6566-01 2 224782711 224782711 G A WDFY1 Silent p.L52L 0.19 TCGA-BR-6566-01 2 225265836 225265836 G T FAM124B Missense_Mutation p.P217H 0.08 deleterious(0) probably_damaging(0.989) TCGA-BR-6566-01 2 230723553 230723553 A G TRIP12 Missense_Mutation p.L279P 0.10 deleterious_low_confidence(0.01) probably_damaging(0.928) TCGA-BR-6566-01 2 231175917 231175917 T - SP140 Frame_Shift_Del p.F779Lfs*17 0.20 TCGA-BR-6566-01 2 231266129 231266129 T - SP140L Frame_Shift_Del p.F492Lfs*17 0.20 TCGA-BR-6566-01 2 233322527 233322527 G A ALPI Missense_Mutation p.R269H 0.10 tolerated(0.06) benign(0.064) TCGA-BR-6566-01 2 234749594 234749594 T C HJURP Missense_Mutation p.K611R 0.36 tolerated(0.25) benign(0.046) TCGA-BR-6566-01 2 235404421 235404421 G - ARL4C 3'UTR 0.18 TCGA-BR-6566-01 2 236649677 236649677 C - AGAP1 Frame_Shift_Del p.P129Rfs*22 0.19 TCGA-BR-6566-01 2 237076276 237076276 G A GBX2 Silent p.S113S 0.33 TCGA-BR-6566-01 2 238002750 238002750 G A COPS8 Missense_Mutation p.A117T 0.09 tolerated(0.1) benign(0.067) TCGA-BR-6566-01 2 238419298 238419298 C T MLPH Silent p.C64C 0.41 TCGA-BR-6566-01 2 240969039 240969039 A G OR6B2 Missense_Mutation p.S270P 0.11 tolerated(0.19) possibly_damaging(0.866) TCGA-BR-6566-01 2 25799766 25799766 G A DTNB Missense_Mutation p.R273C 0.47 deleterious(0.01) benign(0.301) TCGA-BR-6566-01 2 27662650 27662650 C T NRBP1 Silent p.C307C 0.31 TCGA-BR-6566-01 2 27684328 27684328 T C IFT172 Silent p.T750T 0.22 TCGA-BR-6566-01 2 28004550 28004550 T G RBKS Missense_Mutation p.S301R 0.24 deleterious(0) probably_damaging(1) TCGA-BR-6566-01 2 29294952 29294952 G A C2orf71 Missense_Mutation p.P726S 0.11 tolerated(0.1) benign(0.202) TCGA-BR-6566-01 2 32475569 32475569 A G NLRC4 Missense_Mutation p.L455P 0.05 deleterious(0) probably_damaging(0.99) TCGA-BR-6566-01 2 40656482 40656482 A G SLC8A1 Silent p.D313D 0.13 TCGA-BR-6566-01 2 42543190 42543190 G T EML4 Missense_Mutation p.D686Y 0.05 deleterious(0) probably_damaging(0.996) TCGA-BR-6566-01 2 43452530 43452530 T A ZFP36L2 Missense_Mutation p.Q138L 0.08 tolerated(0.47) possibly_damaging(0.728) TCGA-BR-6566-01 2 45807021 45807021 G A SRBD1 Silent p.D355D 0.04 TCGA-BR-6566-01 2 46986749 46986749 C T SOCS5 Silent p.H360H 0.30 TCGA-BR-6566-01 2 48707064 48707064 T C PPP1R21 Silent p.S409S 0.06 TCGA-BR-6566-01 2 48914783 48914783 T - LHCGR 3'UTR 0.31 TCGA-BR-6566-01 2 5832927 5832927 A C SOX11 Missense_Mutation p.E25A 0.22 deleterious(0) benign(0.035) TCGA-BR-6566-01 2 61413904 61413905 - C AHSA2 Frame_Shift_Ins p.L135Pfs*6 0.26 TCGA-BR-6566-01 2 65245255 65245255 T C SLC1A4 Missense_Mutation p.V362A 0.18 deleterious(0) probably_damaging(0.992) TCGA-BR-6566-01 2 65541010 65541010 C A SPRED2 Silent p.R294R 0.25 TCGA-BR-6566-01 2 68361758 68361758 A - WDR92 Intron 0.27 TCGA-BR-6566-01 2 71607362 71607362 T C ZNF638 Missense_Mutation p.V759A 0.26 tolerated(0.07) benign(0.008) TCGA-BR-6566-01 2 74653450 74653450 G - RTKN Frame_Shift_Del p.L538Sfs*117 0.29 TCGA-BR-6566-01 2 86272846 86272846 G A POLR1A Missense_Mutation p.P927L 0.09 deleterious(0) probably_damaging(0.975) TCGA-BR-6566-01 2 86439430 86439430 C T MRPL35 3'UTR 0.20 TCGA-BR-6566-01 2 9013332 9013332 A G MBOAT2 Silent p.H263H 0.10 TCGA-BR-6566-01 2 96919847 96919847 T C TMEM127 Missense_Mutation p.Q139R 0.31 deleterious(0.02) benign(0.444) TCGA-BR-6566-01 2 96963431 96963431 G A SNRNP200 Missense_Mutation p.R383C 0.12 deleterious(0.02) possibly_damaging(0.886) TCGA-BR-6566-01 2 97217888 97217888 C T ARID5A Silent p.T541T 0.24 TCGA-BR-6566-01 2 97751598 97751598 C T FAHD2B Missense_Mutation p.A175T 0.10 tolerated(0.37) benign(0.021) TCGA-BR-6566-01 2 99448879 99448879 C T KIAA1211L Missense_Mutation p.D158N 0.32 deleterious(0) possibly_damaging(0.741) TCGA-BR-6566-01 3 10049217 10049217 C - AC022007.5 RNA 0.07 TCGA-BR-6566-01 3 107524401 107524401 C T BBX 3'UTR 0.27 TCGA-BR-6566-01 3 108818240 108818240 A - MORC1 Frame_Shift_Del p.S130Lfs*14 0.15 TCGA-BR-6566-01 3 112648117 112648117 A G CD200R1 Missense_Mutation p.I147T 0.15 tolerated(0.21) benign(0.061) TCGA-BR-6566-01 3 112969475 112969475 C T BOC Silent p.C57C 0.22 TCGA-BR-6566-01 3 112993495 112993495 C T BOC Missense_Mutation p.A503V 0.20 tolerated(0.16) benign(0.056) TCGA-BR-6566-01 3 113122717 113122717 C T WDR52 Silent p.G384G 0.04 TCGA-BR-6566-01 3 119263419 119263419 A G CD80 Silent p.A132A 0.26 TCGA-BR-6566-01 3 119263442 119263442 C T CD80 Missense_Mutation p.A125T 0.05 tolerated(0.47) benign(0.011) TCGA-BR-6566-01 3 119534599 119534599 G A NR1I2 Missense_Mutation p.V400M 0.21 tolerated(0.11) benign(0.148) TCGA-BR-6566-01 3 122864423 122864423 T A PDIA5 Missense_Mutation p.L322H 0.11 deleterious(0) probably_damaging(0.992) TCGA-BR-6566-01 3 122864424 122864424 C A PDIA5 Silent p.L322L 0.11 TCGA-BR-6566-01 3 126710304 126710304 G A PLXNA1 Silent p.T424T 0.07 TCGA-BR-6566-01 3 126732871 126732871 C T PLXNA1 Silent p.Y774Y 0.19 TCGA-BR-6566-01 3 128973580 128973580 C T COPG1 Silent p.I131I 0.46 TCGA-BR-6566-01 3 129185743 129185743 A G IFT122 Missense_Mutation p.S243G 0.09 tolerated(0.18) benign(0.03) TCGA-BR-6566-01 3 133664053 133664053 C T SLCO2A1 Silent p.S449S 0.16 TCGA-BR-6566-01 3 14489331 14489331 C G SLC6A6 Intron 0.15 TCGA-BR-6566-01 3 151012163 151012163 T - GPR87 Frame_Shift_Del p.I291Sfs*22 0.19 TCGA-BR-6566-01 3 15116004 15116004 C T ZFYVE20 Missense_Mutation p.R547Q 0.08 tolerated_low_confidence(0.38) benign(0.003) TCGA-BR-6566-01 3 155200068 155200068 C T PLCH1 Silent p.E1257E 0.06 TCGA-BR-6566-01 3 155481558 155481558 T - C3orf33 Frame_Shift_Del p.G169Efs*15 0.21 TCGA-BR-6566-01 3 155633942 155633942 T C GMPS Silent p.H391H 0.19 TCGA-BR-6566-01 3 158315874 158315874 A C MLF1 Missense_Mutation p.Q126H 0.23 tolerated(0.57) benign(0.006) TCGA-BR-6566-01 3 159713351 159713351 C T IL12A 3'UTR 0.07 TCGA-BR-6566-01 3 160395732 160395733 TC - ARL14 3'UTR 0.32 TCGA-BR-6566-01 3 167277851 167277851 C T WDR49 Splice_Site p.X217_splice 0.09 TCGA-BR-6566-01 3 169642884 169642884 G A SAMD7 Missense_Mutation p.A84T 0.20 tolerated(0.38) benign(0.004) TCGA-BR-6566-01 3 184043127 184043127 G A EIF4G1 Missense_Mutation p.R983H 0.26 deleterious(0) probably_damaging(0.999) TCGA-BR-6566-01 3 185304182 185304182 C T SENP2 5'UTR 0.20 TCGA-BR-6566-01 3 186953745 186953745 C T MASP1 Silent p.S638S 0.06 TCGA-BR-6566-01 3 194373625 194373625 A G LSG1 Missense_Mutation p.W336R 0.23 tolerated(0.38) benign(0) TCGA-BR-6566-01 3 195492283 195492283 T C MUC4 Silent p.E4552E 0.26 TCGA-BR-6566-01 3 196304666 196304666 G A FBXO45 Missense_Mutation p.A221T 0.34 tolerated(0.33) possibly_damaging(0.892) TCGA-BR-6566-01 3 196792610 196792610 T C DLG1 Silent p.E756E 0.05 TCGA-BR-6566-01 3 30029683 30029683 C T RBMS3 Missense_Mutation p.T383M 0.25 deleterious(0) possibly_damaging(0.762) TCGA-BR-6566-01 3 32495813 32495813 C A CMTM7 3'UTR 0.25 TCGA-BR-6566-01 3 32569943 32569943 T - DYNC1LI1 Frame_Shift_Del p.K486Sfs*8 0.17 TCGA-BR-6566-01 3 37033859 37033859 C T EPM2AIP1 Missense_Mutation p.S237N 0.06 tolerated(0.1) possibly_damaging(0.73) TCGA-BR-6566-01 3 38793834 38793834 C A SCN10A Missense_Mutation p.G544V 0.08 tolerated(0.16) benign(0.258) TCGA-BR-6566-01 3 40529635 40529635 A T ZNF619 Missense_Mutation p.N585I 0.16 deleterious_low_confidence(0.01) benign(0.003) TCGA-BR-6566-01 3 41265566 41265566 A G CTNNB1 Missense_Mutation p.T3A 0.21 tolerated_low_confidence(0.06) benign(0.001) TCGA-BR-6566-01 3 46009009 46009009 T C FYCO1 Missense_Mutation p.Q606R 0.05 tolerated(0.3) benign(0.002) TCGA-BR-6566-01 3 46399125 46399125 A T CCR2 Missense_Mutation p.D36V 0.21 deleterious(0.02) benign(0.194) TCGA-BR-6566-01 3 47147551 47147551 C T SETD2 Missense_Mutation p.R1592Q 0.23 deleterious(0) probably_damaging(0.925) TCGA-BR-6566-01 3 47449946 47449946 C T PTPN23 Silent p.P432P 0.16 TCGA-BR-6566-01 3 48454291 48454291 C T PLXNB1 Missense_Mutation p.A1572T 0.12 tolerated(0.19) probably_damaging(1) TCGA-BR-6566-01 3 48612948 48612948 G A COL7A1 Missense_Mutation p.R2002C 0.17 unknown(0) TCGA-BR-6566-01 3 48628240 48628240 C T COL7A1 Missense_Mutation p.R549Q 0.18 unknown(0) TCGA-BR-6566-01 3 49755668 49755668 G A AMIGO3 Missense_Mutation p.R411C 0.26 tolerated(0.17) benign(0.005) TCGA-BR-6566-01 3 52395698 52395698 C T DNAH1 Silent p.F1632F 0.29 TCGA-BR-6566-01 3 52841006 52841006 G A ITIH3 Missense_Mutation p.A716T 0.25 tolerated(0.97) benign(0.021) TCGA-BR-6566-01 3 52853813 52853813 G A ITIH4 Intron 0.18 TCGA-BR-6566-01 3 53857838 53857838 G A CHDH Silent p.R66R 0.21 TCGA-BR-6566-01 3 53911269 53911269 T C ACTR8 Missense_Mutation p.Y219C 0.30 tolerated(0.17) benign(0.037) TCGA-BR-6566-01 3 58279408 58279408 G A ABHD6 Missense_Mutation p.M310I 0.16 tolerated(0.23) benign(0.009) TCGA-BR-6566-01 3 64619404 64619404 T C ADAMTS9 Missense_Mutation p.N670D 0.14 tolerated(0.08) benign(0.02) TCGA-BR-6566-01 3 68788325 68788325 C G FAM19A4 Missense_Mutation p.W104C 0.21 deleterious(0) probably_damaging(1) TCGA-BR-6566-01 3 69027566 69027566 C T EOGT Missense_Mutation p.R368H 0.05 tolerated(0.18) probably_damaging(0.923) TCGA-BR-6566-01 3 69112219 69112220 - C UBA3 Frame_Shift_Ins p.T203Dfs*5 0.09 TCGA-BR-6566-01 3 77147272 77147272 C T ROBO2 Missense_Mutation p.R73W 0.31 deleterious(0) unknown(0) TCGA-BR-6566-01 3 88040785 88040785 G T HTR1F Nonsense_Mutation p.G296* 0.08 TCGA-BR-6566-01 3 9027355 9027355 C T SRGAP3 Missense_Mutation p.A1050T 0.32 tolerated_low_confidence(0.25) benign(0.002) TCGA-BR-6566-01 3 93768344 93768344 G A ARL13B Silent p.T373T 0.19 TCGA-BR-6566-01 3 9714373 9714373 A G MTMR14 Missense_Mutation p.T228A 0.27 deleterious(0) probably_damaging(0.952) TCGA-BR-6566-01 4 103557139 103557139 A G MANBA Silent p.L680L 0.17 TCGA-BR-6566-01 4 109740459 109740459 T C COL25A1 Silent p.K624K 0.11 TCGA-BR-6566-01 4 113189433 113189433 G A AP1AR Silent p.E259E 0.13 TCGA-BR-6566-01 4 11401356 11401356 A G HS3ST1 Missense_Mutation p.W92R 0.05 tolerated(0.37) benign(0.288) TCGA-BR-6566-01 4 114277090 114277090 C T ANK2 Missense_Mutation p.A2439V 0.19 possibly_damaging(0.836) TCGA-BR-6566-01 4 114290957 114290957 A - ANK2 Frame_Shift_Del p.K3870Rfs*27 0.22 TCGA-BR-6566-01 4 122075764 122075764 T - TNIP3 Frame_Shift_Del p.N222Ifs*15 0.14 TCGA-BR-6566-01 4 123120577 123120577 G A KIAA1109 Missense_Mutation p.R451Q 0.05 possibly_damaging(0.447) TCGA-BR-6566-01 4 123159371 123159371 A G KIAA1109 Silent p.S1233S 0.06 TCGA-BR-6566-01 4 126238469 126238469 G T FAT4 Missense_Mutation p.E301D 0.18 possibly_damaging(0.666) TCGA-BR-6566-01 4 126320048 126320048 T C FAT4 Missense_Mutation p.L1762P 0.20 probably_damaging(1) TCGA-BR-6566-01 4 126329902 126329902 C A FAT4 Missense_Mutation p.P1958H 0.14 probably_damaging(0.958) TCGA-BR-6566-01 4 126371861 126371861 G A FAT4 Silent p.A3230A 0.18 TCGA-BR-6566-01 4 126411565 126411566 - G FAT4 Frame_Shift_Ins p.K4532Efs*21 0.17 TCGA-BR-6566-01 4 128748490 128748490 A G HSPA4L Missense_Mutation p.M693V 0.07 tolerated(0.63) benign(0.001) TCGA-BR-6566-01 4 1332301 1332301 G A MAEA Missense_Mutation p.A331T 0.09 deleterious(0) probably_damaging(0.985) TCGA-BR-6566-01 4 1379820 1379820 C T UVSSA 3'UTR 0.10 TCGA-BR-6566-01 4 145629358 145629358 C G HHIP Missense_Mutation p.T399R 0.16 tolerated(0.68) possibly_damaging(0.657) TCGA-BR-6566-01 4 146041224 146041224 A - ABCE1 Frame_Shift_Del p.M357Wfs*6 0.22 TCGA-BR-6566-01 4 149035413 149035413 C A NR3C2 Splice_Site p.X881_splice 0.10 TCGA-BR-6566-01 4 15437604 15437604 A G C1QTNF7 Silent p.A86A 0.17 TCGA-BR-6566-01 4 164394017 164394017 T C TKTL2 Silent p.P290P 0.22 TCGA-BR-6566-01 4 175898280 175898280 G A ADAM29 Missense_Mutation p.G535D 0.18 deleterious(0) probably_damaging(0.998) TCGA-BR-6566-01 4 178283558 178283558 A - NEIL3 Frame_Shift_Del p.K585Nfs*15 0.19 TCGA-BR-6566-01 4 1809415 1809415 G A FGFR3 3'UTR 0.20 TCGA-BR-6566-01 4 183658156 183658156 T G TENM3 Missense_Mutation p.L1055V 0.22 deleterious(0) possibly_damaging(0.636) TCGA-BR-6566-01 4 20599972 20599972 C T SLIT2 Missense_Mutation p.R1216C 0.13 deleterious(0) probably_damaging(0.94) TCGA-BR-6566-01 4 38016279 38016279 G A TBC1D1 Silent p.P189P 0.22 TCGA-BR-6566-01 4 38698768 38698768 A G KLF3 Missense_Mutation p.T308A 0.05 deleterious(0) probably_damaging(0.999) TCGA-BR-6566-01 4 40752837 40752837 C - NSUN7 Frame_Shift_Del p.P43Rfs*25 0.15 TCGA-BR-6566-01 4 47939078 47939078 C T CNGA1 Missense_Mutation p.R547H 0.04 deleterious(0.01) probably_damaging(1) TCGA-BR-6566-01 4 54248502 54248502 G A FIP1L1 Silent p.P76P 0.11 TCGA-BR-6566-01 4 5664972 5664972 A C EVC2 Missense_Mutation p.V336G 0.19 tolerated(0.44) benign(0.173) TCGA-BR-6566-01 4 68691524 68691524 G A TMPRSS11D Missense_Mutation p.H341Y 0.24 tolerated(0.06) benign(0) TCGA-BR-6566-01 4 6925517 6925517 G A TBC1D14 Missense_Mutation p.G134D 0.26 deleterious_low_confidence(0.03) benign(0.325) TCGA-BR-6566-01 4 69795654 69795654 G A UGT2A3 Silent p.Y487Y 0.15 TCGA-BR-6566-01 4 77283362 77283362 C T CCDC158 Missense_Mutation p.R646H 0.22 tolerated(0.38) probably_damaging(0.993) TCGA-BR-6566-01 4 82063969 82063969 A G PRKG2 Silent p.G462G 0.20 TCGA-BR-6566-01 4 85525440 85525440 A C CDS1 Silent p.T54T 0.17 TCGA-BR-6566-01 4 85636503 85636503 G A WDFY3 Missense_Mutation p.R2637W 0.24 deleterious(0) probably_damaging(0.974) TCGA-BR-6566-01 4 88053502 88053502 A G AFF1 Missense_Mutation p.N1085D 0.19 deleterious(0.01) unknown(0) TCGA-BR-6566-01 4 90743423 90743423 A C SNCA Missense_Mutation p.F94V 0.05 tolerated(0.5) benign(0.203) TCGA-BR-6566-01 4 96140152 96140152 G A UNC5C Missense_Mutation p.S538L 0.21 tolerated(0.63) benign(0.322) TCGA-BR-6566-01 4 9784677 9784677 G A DRD5 Missense_Mutation p.D342N 0.21 tolerated(0.71) benign(0.044) TCGA-BR-6566-01 5 1052501 1052501 G A SLC12A7 Missense_Mutation p.R1076W 0.20 deleterious(0) probably_damaging(1) TCGA-BR-6566-01 5 1081737 1081737 C T SLC12A7 Missense_Mutation p.A418T 0.16 tolerated(1) benign(0.001) TCGA-BR-6566-01 5 112227455 112227455 T G ZRSR1 Missense_Mutation p.L40R 0.25 deleterious(0.04) possibly_damaging(0.766) TCGA-BR-6566-01 5 1212545 1212545 C T SLC6A19 Silent p.C203C 0.15 TCGA-BR-6566-01 5 133644013 133644013 T C CDKL3 Missense_Mutation p.M394V 0.05 tolerated(0.74) benign(0.001) TCGA-BR-6566-01 5 13700841 13700841 C T DNAH5 Missense_Mutation p.G4544D 0.20 probably_damaging(0.982) TCGA-BR-6566-01 5 140223021 140223021 C T PCDHA8 Silent p.C705C 0.58 TCGA-BR-6566-01 5 140250465 140250465 G A PCDHA11 Missense_Mutation p.V593M 0.22 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-BR-6566-01 5 140595915 140595915 C T PCDHB13 Silent p.S740S 0.04 TCGA-BR-6566-01 5 140750133 140750133 G A PCDHGB3 Missense_Mutation p.V58M 0.05 deleterious(0.04) benign(0.348) TCGA-BR-6566-01 5 140789324 140789324 G A PCDHGB6 Missense_Mutation p.A519T 0.14 tolerated(0.08) possibly_damaging(0.595) TCGA-BR-6566-01 5 140789386 140789386 G A PCDHGB6 Silent p.S539S 0.21 TCGA-BR-6566-01 5 140793850 140793850 G A PCDHGA10 Missense_Mutation p.V370I 0.24 tolerated_low_confidence(1) benign(0.024) TCGA-BR-6566-01 5 140856242 140856242 C T PCDHGC3 Missense_Mutation p.R187W 0.27 deleterious(0.02) probably_damaging(0.996) TCGA-BR-6566-01 5 142437268 142437269 - A ARHGAP26 Frame_Shift_Ins p.N500Kfs*17 0.11 TCGA-BR-6566-01 5 145552290 145552290 C T LARS Missense_Mutation p.R58H 0.18 tolerated(0.1) benign(0.329) TCGA-BR-6566-01 5 148206748 148206748 G A ADRB2 Silent p.T118T 0.28 TCGA-BR-6566-01 5 150934154 150934154 A T FAT2 Missense_Mutation p.N1238K 0.17 possibly_damaging(0.616) TCGA-BR-6566-01 5 156920069 156920069 C - ADAM19 Frame_Shift_Del p.G607Afs*20 0.17 TCGA-BR-6566-01 5 159680577 159680577 C T CCNJL Silent p.G372G 0.06 TCGA-BR-6566-01 5 172513527 172513527 G A CREBRF Silent p.P11P 0.21 TCGA-BR-6566-01 5 176018287 176018287 C A CDHR2 Missense_Mutation p.P1206T 0.22 deleterious(0.03) benign(0.185) TCGA-BR-6566-01 5 176687028 176687028 C T NSD1 Missense_Mutation p.H1669Y 0.05 deleterious(0) probably_damaging(0.998) TCGA-BR-6566-01 5 176885640 176885640 C T DBN1 Missense_Mutation p.G401S 0.10 tolerated_low_confidence(0.58) benign(0.021) TCGA-BR-6566-01 5 178139186 178139186 G A ZNF354A Missense_Mutation p.R565C 0.22 deleterious(0.01) possibly_damaging(0.462) TCGA-BR-6566-01 5 178540988 178540988 A G ADAMTS2 Silent p.D1172D 0.22 TCGA-BR-6566-01 5 180055888 180055888 A G FLT4 Missense_Mutation p.F366S 0.21 deleterious(0.04) possibly_damaging(0.842) TCGA-BR-6566-01 5 42806910 42806910 G T SEPP1 Intron 0.30 TCGA-BR-6566-01 5 56219756 56219756 A G MIER3 Silent p.H345H 0.20 TCGA-BR-6566-01 5 66478959 66478959 G A CD180 Missense_Mutation p.T571I 0.11 tolerated(1) benign(0.002) TCGA-BR-6566-01 5 66480342 66480342 C T CD180 Missense_Mutation p.G110E 0.04 deleterious(0.01) probably_damaging(0.999) TCGA-BR-6566-01 5 7861317 7861317 C T FASTKD3 Missense_Mutation p.G610E 0.07 deleterious(0) probably_damaging(1) TCGA-BR-6566-01 5 7868079 7868079 G A FASTKD3 Missense_Mutation p.R40C 0.20 tolerated(0.26) benign(0.002) TCGA-BR-6566-01 5 81571879 81571879 T - RPS23 3'UTR 0.28 TCGA-BR-6566-01 5 82948434 82948434 T - HAPLN1 Frame_Shift_Del p.T104Pfs*11 0.09 TCGA-BR-6566-01 5 9054362 9054362 G A SEMA5A Silent p.G842G 0.15 TCGA-BR-6566-01 6 101037585 101037585 C T ASCC3 Silent p.K1825K 0.09 TCGA-BR-6566-01 6 101100601 101100601 C A ASCC3 Missense_Mutation p.E996D 0.34 deleterious(0.01) probably_damaging(0.951) TCGA-BR-6566-01 6 110037748 110037748 C T FIG4 Missense_Mutation p.A89V 0.19 tolerated(0.52) benign(0.008) TCGA-BR-6566-01 6 110301532 110301532 A G GPR6 3'UTR 0.33 TCGA-BR-6566-01 6 11185718 11185718 C T NEDD9 Missense_Mutation p.A728T 0.18 deleterious(0) probably_damaging(0.982) TCGA-BR-6566-01 6 112438990 112438991 - G LAMA4 Frame_Shift_Ins p.M1645Hfs*18 0.23 TCGA-BR-6566-01 6 116836954 116836954 T - FAM26E Frame_Shift_Del p.F246Lfs*75 0.18 TCGA-BR-6566-01 6 118953732 118953732 A C CEP85L Missense_Mutation p.L42W 0.21 deleterious(0.03) probably_damaging(0.998) TCGA-BR-6566-01 6 119324726 119324728 TCT - FAM184A In_Frame_Del p.E626del 0.22 TCGA-BR-6566-01 6 119569513 119569513 G A MAN1A1 Nonsense_Mutation p.R302* 0.29 TCGA-BR-6566-01 6 127651955 127651955 T C ECHDC1 Silent p.S79S 0.14 TCGA-BR-6566-01 6 127804080 127804080 T - SOGA3 Frame_Shift_Del p.K512Rfs*14 0.24 TCGA-BR-6566-01 6 135318743 135318743 C T HBS1L Silent p.P197P 0.24 TCGA-BR-6566-01 6 135507123 135507123 C T MYB Missense_Mutation p.R36C 0.25 deleterious(0) probably_damaging(0.997) TCGA-BR-6566-01 6 137245806 137245806 T C SLC35D3 Missense_Mutation p.I408T 0.31 deleterious_low_confidence(0) benign(0.125) TCGA-BR-6566-01 6 146264759 146264759 T - SHPRH Frame_Shift_Del p.G587Efs*23 0.21 TCGA-BR-6566-01 6 152680514 152680514 T C SYNE1 Missense_Mutation p.Y3460C 0.05 probably_damaging(0.986) TCGA-BR-6566-01 6 152749388 152749388 G A SYNE1 Missense_Mutation p.A1643V 0.04 benign(0.017) TCGA-BR-6566-01 6 15533468 15533468 C T DTNBP1 Intron 0.06 TCGA-BR-6566-01 6 158497755 158497755 C - SYNJ2 Frame_Shift_Del p.A799Pfs*25 0.24 TCGA-BR-6566-01 6 165715776 165715776 T G C6orf118 Missense_Mutation p.K12T 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.624) TCGA-BR-6566-01 6 170597536 170597536 G A DLL1 Missense_Mutation p.T154M 0.26 tolerated(0.08) possibly_damaging(0.485) TCGA-BR-6566-01 6 25924033 25924033 C T SLC17A2 Missense_Mutation p.A44T 0.05 tolerated(0.08) possibly_damaging(0.456) TCGA-BR-6566-01 6 26017761 26017761 T - HIST1H1A Frame_Shift_Del p.K67Rfs*25 0.10 TCGA-BR-6566-01 6 26225388 26225388 G A HIST1H3E Silent p.A2A 0.10 TCGA-BR-6566-01 6 26413715 26413715 A C BTN3A1 Missense_Mutation p.E446A 0.21 tolerated(0.09) benign(0.245) TCGA-BR-6566-01 6 27833264 27833264 C T HIST1H2AL Silent p.V44V 0.15 TCGA-BR-6566-01 6 28227239 28227239 G A NKAPL Silent p.P30P 0.23 TCGA-BR-6566-01 6 30121851 30121851 A C TRIM10 Silent p.A447A 0.16 TCGA-BR-6566-01 6 30572415 30572415 C T PPP1R10 Missense_Mutation p.R351H 0.05 tolerated(0.1) possibly_damaging(0.858) TCGA-BR-6566-01 6 30692147 30692147 C T TUBB Silent p.F436F 0.12 TCGA-BR-6566-01 6 30708321 30708321 T - FLOT1 Frame_Shift_Del p.D175Mfs*30 0.20 TCGA-BR-6566-01 6 30865936 30865936 C T DDR1 Missense_Mutation p.A774V 0.06 deleterious(0) probably_damaging(0.995) TCGA-BR-6566-01 6 31583848 31583848 C T AIF1 Intron 0.11 TCGA-BR-6566-01 6 31691611 31691611 C G C6orf25 Missense_Mutation p.S86C 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.834) TCGA-BR-6566-01 6 32037632 32037632 C T TNXB Missense_Mutation p.R1762Q 0.35 benign(0.002) TCGA-BR-6566-01 6 32190542 32190542 T C NOTCH4 Missense_Mutation p.D66G 0.30 deleterious(0.05) probably_damaging(0.998) TCGA-BR-6566-01 6 33654203 33654203 C T ITPR3 Silent p.H1962H 0.18 TCGA-BR-6566-01 6 34825955 34825955 C A UHRF1BP1 Missense_Mutation p.L608I 0.12 tolerated(0.36) benign(0.2) TCGA-BR-6566-01 6 36334731 36334731 C T ETV7 Missense_Mutation p.E277K 0.06 deleterious(0) probably_damaging(0.998) TCGA-BR-6566-01 6 37605120 37605120 G - MDGA1 3'UTR 0.18 TCGA-BR-6566-01 6 3850409 3850409 T G FAM50B Missense_Mutation p.F122V 0.24 deleterious(0.01) probably_damaging(0.997) TCGA-BR-6566-01 6 43020511 43020511 G A CUL7 Missense_Mutation p.R58C 0.06 tolerated(0.05) probably_damaging(0.981) TCGA-BR-6566-01 6 43745279 43745279 G A VEGFA Silent p.E244E 0.07 TCGA-BR-6566-01 6 46135200 46135200 G T ENPP5 Missense_Mutation p.S267Y 0.17 deleterious(0) probably_damaging(0.995) TCGA-BR-6566-01 6 46518026 46518026 G C CYP39A1 3'UTR 0.22 TCGA-BR-6566-01 6 51890533 51890533 G T PKHD1 Missense_Mutation p.L1359M 0.06 deleterious(0.04) possibly_damaging(0.476) TCGA-BR-6566-01 6 56374465 56374465 C - DST Frame_Shift_Del p.T3707Lfs*38 0.27 TCGA-BR-6566-01 6 56468148 56468148 A - DST Intron 0.14 TCGA-BR-6566-01 6 62887150 62887150 G A KHDRBS2 Silent p.I53I 0.33 TCGA-BR-6566-01 6 64408416 64408417 - T PHF3 Frame_Shift_Ins p.R971Sfs*6 0.27 TCGA-BR-6566-01 6 72596740 72596740 T C RIMS1 Missense_Mutation p.V5A 0.23 deleterious_low_confidence(0.05) benign(0.006) TCGA-BR-6566-01 6 7880637 7880637 A - BMP6 3'UTR 0.14 TCGA-BR-6566-01 6 87965771 87965771 T G ZNF292 Silent p.T808T 0.19 TCGA-BR-6566-01 6 87967537 87967537 G A ZNF292 Missense_Mutation p.R1397Q 0.18 deleterious(0) probably_damaging(0.999) TCGA-BR-6566-01 6 87968758 87968758 A G ZNF292 Missense_Mutation p.N1804S 0.14 tolerated_low_confidence(1) benign(0.001) TCGA-BR-6566-01 6 87969484 87969484 A - ZNF292 Frame_Shift_Del p.S2049Vfs*11 0.44 TCGA-BR-6566-01 6 90382364 90382364 G A MDN1 Missense_Mutation p.A4511V 0.22 benign(0.036) TCGA-BR-6566-01 6 90433306 90433306 C A MDN1 Missense_Mutation p.M1901I 0.30 benign(0.05) TCGA-BR-6566-01 7 100410518 100410518 G C EPHB4 Missense_Mutation p.Q657E 0.16 deleterious(0.03) probably_damaging(0.975) TCGA-BR-6566-01 7 100416267 100416267 C G EPHB4 Splice_Site p.X433_splice 0.20 TCGA-BR-6566-01 7 100484536 100484539 AAGG - SRRT Frame_Shift_Del p.E591Gfs*14 0.13 TCGA-BR-6566-01 7 102604067 102604067 C T FBXL13 Missense_Mutation p.V213M 0.08 deleterious(0.02) benign(0.027) TCGA-BR-6566-01 7 102996164 102996164 C A PSMC2 Missense_Mutation p.L72M 0.10 deleterious(0) probably_damaging(0.999) TCGA-BR-6566-01 7 106799946 106799947 - A PRKAR2B Frame_Shift_Ins p.R394Kfs*7 0.21 TCGA-BR-6566-01 7 107303819 107303819 G T SLC26A4 Missense_Mutation p.K81N 0.05 deleterious(0) probably_damaging(1) TCGA-BR-6566-01 7 107572748 107572751 TCCT - LAMB1 Frame_Shift_Del p.G1421Rfs*31 0.16 TCGA-BR-6566-01 7 108119718 108119718 G A PNPLA8 Missense_Mutation p.R662C 0.33 deleterious(0) possibly_damaging(0.847) TCGA-BR-6566-01 7 116423356 116423356 A G MET Splice_Site p.X1229_splice 0.23 TCGA-BR-6566-01 7 123593877 123593877 G A SPAM1 Missense_Mutation p.G85R 0.29 tolerated(0.05) possibly_damaging(0.693) TCGA-BR-6566-01 7 123594152 123594152 T C SPAM1 Silent p.N176N 0.36 TCGA-BR-6566-01 7 129847757 129847757 G T SSMEM1 Missense_Mutation p.D3Y 0.30 tolerated(0.5) probably_damaging(0.934) TCGA-BR-6566-01 7 134873256 134873256 A G WDR91 Missense_Mutation p.Y604H 0.07 tolerated(0.58) benign(0.003) TCGA-BR-6566-01 7 135370367 135370367 G T SLC13A4 Missense_Mutation p.A503D 0.28 deleterious(0.01) probably_damaging(0.965) TCGA-BR-6566-01 7 137075845 137075845 G T DGKI 3'UTR 0.12 TCGA-BR-6566-01 7 137612997 137612997 G A CREB3L2 Missense_Mutation p.P73L 0.17 deleterious(0.02) probably_damaging(0.998) TCGA-BR-6566-01 7 143095887 143095887 C - EPHA1 Frame_Shift_Del p.C383Afs*71 0.18 TCGA-BR-6566-01 7 143632486 143632486 G A OR2F2 Missense_Mutation p.R54Q 0.11 tolerated(0.12) benign(0.015) TCGA-BR-6566-01 7 148767858 148767858 G A ZNF786 Missense_Mutation p.T669M 0.20 tolerated(0.09) probably_damaging(0.997) TCGA-BR-6566-01 7 148876830 148876830 C T ZNF398 Silent p.V622V 0.14 TCGA-BR-6566-01 7 149463148 149463148 G A ZNF467 Missense_Mutation p.A148V 0.32 tolerated(0.07) benign(0.154) TCGA-BR-6566-01 7 149463207 149463207 C T ZNF467 Silent p.G128G 0.20 TCGA-BR-6566-01 7 150217549 150217549 C T GIMAP7 Missense_Mutation p.R163C 0.08 deleterious(0.05) possibly_damaging(0.852) TCGA-BR-6566-01 7 150772823 150772823 G A SLC4A2 Missense_Mutation p.M1144I 0.43 tolerated(0.14) possibly_damaging(0.848) TCGA-BR-6566-01 7 150774416 150774416 C T FASTK Silent p.V424V 0.26 TCGA-BR-6566-01 7 150883648 150883648 G A ASB10 Nonsense_Mutation p.R139* 0.29 TCGA-BR-6566-01 7 151856107 151856107 C T KMT2C Silent p.L3837L 0.05 TCGA-BR-6566-01 7 151878420 151878420 A G KMT2C Silent p.S2175S 0.28 TCGA-BR-6566-01 7 154681010 154681010 C T DPP6 Missense_Mutation p.A778V 0.26 tolerated(0.16) benign(0.134) TCGA-BR-6566-01 7 156755705 156755705 C T NOM1 Missense_Mutation p.R583C 0.13 deleterious(0.01) probably_damaging(0.917) TCGA-BR-6566-01 7 157414084 157414084 G A PTPRN2 Missense_Mutation p.P772S 0.20 tolerated(0.2) benign(0.014) TCGA-BR-6566-01 7 19184940 19184940 A C FERD3L Missense_Mutation p.F16V 0.12 deleterious(0) possibly_damaging(0.713) TCGA-BR-6566-01 7 24839808 24839808 T C OSBPL3 Silent p.L886L 0.12 TCGA-BR-6566-01 7 2578167 2578167 G A BRAT1 Missense_Mutation p.P668S 0.35 tolerated(0.8) benign(0.004) TCGA-BR-6566-01 7 27185359 27185359 C T HOXA6 Missense_Mutation p.R207H 0.03 deleterious(0) probably_damaging(0.991) TCGA-BR-6566-01 7 28997405 28997405 T G AC005013.5 RNA 0.21 TCGA-BR-6566-01 7 29105640 29105640 G A CPVL Missense_Mutation p.T321M 0.15 tolerated(0.06) benign(0.082) TCGA-BR-6566-01 7 2968323 2968323 G - CARD11 Frame_Shift_Del p.R555Gfs*45 0.22 TCGA-BR-6566-01 7 36895150 36895150 G A ELMO1 3'UTR 0.14 TCGA-BR-6566-01 7 37951761 37951761 G - SFRP4 Frame_Shift_Del p.H251Ifs*15 0.16 TCGA-BR-6566-01 7 38810820 38810820 T - VPS41 Frame_Shift_Del p.N388Ifs*15 0.23 TCGA-BR-6566-01 7 40102647 40102647 A - CDK13 Frame_Shift_Del p.K911Nfs*13 0.20 TCGA-BR-6566-01 7 41740025 41740025 C - INHBA 5'UTR 0.18 TCGA-BR-6566-01 7 44802877 44802877 C T ZMIZ2 Silent p.G575G 0.14 TCGA-BR-6566-01 7 47344511 47344511 G A TNS3 Missense_Mutation p.A914V 0.21 tolerated(0.9) benign(0.001) TCGA-BR-6566-01 7 4830444 4830444 T C AP5Z1 Silent p.C693C 0.11 TCGA-BR-6566-01 7 51111346 51111346 T C COBL Silent p.G380G 0.20 TCGA-BR-6566-01 7 5540477 5540477 A G FBXL18 Missense_Mutation p.F475L 0.23 tolerated(0.55) possibly_damaging(0.529) TCGA-BR-6566-01 7 5568135 5568137 GAG - ACTB In_Frame_Del p.L193del 0.41 TCGA-BR-6566-01 7 64292176 64292176 A - ZNF138 Frame_Shift_Del p.I162Ffs*56 0.11 TCGA-BR-6566-01 7 66103382 66103382 C T KCTD7 Missense_Mutation p.R153C 0.13 deleterious(0) probably_damaging(0.981) TCGA-BR-6566-01 7 72849399 72849399 C T FZD9 Silent p.H354H 0.06 TCGA-BR-6566-01 7 76610356 76610356 C - UPK3B Intron 0.40 TCGA-BR-6566-01 7 76889459 76889459 C T CCDC146 Nonsense_Mutation p.R298* 0.06 TCGA-BR-6566-01 7 84702392 84702392 T C SEMA3D Silent p.E127E 0.08 TCGA-BR-6566-01 7 91631714 91631714 A G AKAP9 Missense_Mutation p.E828G 0.08 possibly_damaging(0.69) TCGA-BR-6566-01 7 92208639 92208639 T - FAM133B Frame_Shift_Del p.M65* 0.32 TCGA-BR-6566-01 7 94034179 94034179 G A COL1A2 Missense_Mutation p.G136D 0.15 unknown(0) TCGA-BR-6566-01 7 96318150 96318150 T - SHFM1 3'UTR 0.14 TCGA-BR-6566-01 7 99170985 99170985 T C ZNF655 Silent p.S453S 0.37 TCGA-BR-6566-01 7 99787211 99787211 C T STAG3 Missense_Mutation p.R287C 0.04 deleterious(0) probably_damaging(0.988) TCGA-BR-6566-01 8 105509429 105509429 A - LRP12 Frame_Shift_Del p.C451Afs*37 0.25 TCGA-BR-6566-01 8 119941097 119941097 C T TNFRSF11B Missense_Mutation p.A158T 0.17 tolerated(0.32) benign(0.059) TCGA-BR-6566-01 8 132051861 132051861 G A ADCY8 Missense_Mutation p.T240M 0.25 tolerated(0.1) possibly_damaging(0.586) TCGA-BR-6566-01 8 134034247 134034247 G A TG Silent p.A2296A 0.24 TCGA-BR-6566-01 8 144810245 144810245 C T FAM83H Silent p.P462P 0.05 TCGA-BR-6566-01 8 144946676 144946676 T G EPPK1 Missense_Mutation p.E249A 0.17 probably_damaging(0.993) TCGA-BR-6566-01 8 144994175 144994175 G A PLEC Missense_Mutation p.R3409C 0.04 probably_damaging(0.972) TCGA-BR-6566-01 8 145746387 145746387 C A LRRC14 Missense_Mutation p.A336D 0.04 deleterious(0.01) benign(0.124) TCGA-BR-6566-01 8 145948606 145948606 C T ZNF251 Missense_Mutation p.V147M 0.17 tolerated(0.23) benign(0) TCGA-BR-6566-01 8 146076615 146076615 C A COMMD5 Missense_Mutation p.A37S 0.19 tolerated(0.57) benign(0.021) TCGA-BR-6566-01 8 196026 196026 C T ZNF596 Silent p.C393C 0.09 TCGA-BR-6566-01 8 2072088 2072088 G A MYOM2 Missense_Mutation p.C1231Y 0.19 deleterious(0.03) possibly_damaging(0.62) TCGA-BR-6566-01 8 22864845 22864845 C T RHOBTB2 Missense_Mutation p.R385C 0.04 deleterious(0.01) benign(0.009) TCGA-BR-6566-01 8 27145611 27145611 C T TRIM35 Missense_Mutation p.G313D 0.11 deleterious(0.02) probably_damaging(0.995) TCGA-BR-6566-01 8 27151667 27151667 G A TRIM35 Missense_Mutation p.T231M 0.18 deleterious(0.02) benign(0.032) TCGA-BR-6566-01 8 27779531 27779531 G A SCARA5 Missense_Mutation p.A158V 0.50 tolerated(0.05) benign(0.002) TCGA-BR-6566-01 8 2836280 2836280 C T CSMD1 Missense_Mutation p.R2807H 0.32 probably_damaging(0.999) TCGA-BR-6566-01 8 29195908 29195908 C T DUSP4 Silent p.S230S 0.14 TCGA-BR-6566-01 8 42812260 42812260 C T HOOK3 Silent p.V164V 0.30 TCGA-BR-6566-01 8 42821647 42821647 C T HOOK3 Missense_Mutation p.R271C 0.06 deleterious(0) probably_damaging(0.997) TCGA-BR-6566-01 8 48874074 48874074 A C MCM4 Splice_Site p.X24_splice 0.06 TCGA-BR-6566-01 8 48955657 48955657 C T UBE2V2 Silent p.G27G 0.12 TCGA-BR-6566-01 8 49833901 49833901 G A SNAI2 5'UTR 0.12 TCGA-BR-6566-01 8 53568774 53568774 G A RB1CC1 Silent p.Y1205Y 0.20 TCGA-BR-6566-01 8 70585114 70585114 G A SLCO5A1 Missense_Mutation p.P846L 0.21 deleterious_low_confidence(0.04) probably_damaging(0.982) TCGA-BR-6566-01 8 70744651 70744651 C T SLCO5A1 Silent p.P86P 0.19 TCGA-BR-6566-01 8 70964201 70964201 A G PRDM14 3'UTR 0.20 TCGA-BR-6566-01 8 72946517 72946517 A G TRPA1 Missense_Mutation p.F884S 0.14 deleterious(0) possibly_damaging(0.903) TCGA-BR-6566-01 8 81897284 81897284 A G PAG1 Silent p.S201S 0.09 TCGA-BR-6566-01 8 8865587 8865587 G A ERI1 Silent p.T72T 0.22 TCGA-BR-6566-01 8 97269256 97269256 G A MTERFD1 Missense_Mutation p.P141S 0.10 tolerated(0.19) possibly_damaging(0.809) TCGA-BR-6566-01 9 101530501 101530501 G A ANKS6 Silent p.I668I 0.20 TCGA-BR-6566-01 9 105767642 105767642 G C CYLC2 Missense_Mutation p.K243N 0.20 deleterious(0.01) unknown(0) TCGA-BR-6566-01 9 111617863 111617863 C A ACTL7B Missense_Mutation p.K116N 0.11 deleterious(0.01) possibly_damaging(0.602) TCGA-BR-6566-01 9 111625161 111625161 C T ACTL7A Silent p.L187L 0.08 TCGA-BR-6566-01 9 112144725 112144725 G A PTPN3 Silent p.T795T 0.26 TCGA-BR-6566-01 9 114138817 114138817 G A KIAA0368 Missense_Mutation p.A1498V 0.28 tolerated(0.15) benign(0.286) TCGA-BR-6566-01 9 114874015 114874015 G T SUSD1 Missense_Mutation p.P364T 0.15 tolerated(0.32) benign(0.199) TCGA-BR-6566-01 9 117552745 117552745 G A TNFSF15 Missense_Mutation p.A248V 0.13 deleterious(0.04) probably_damaging(1) TCGA-BR-6566-01 9 119109445 119109445 C T PAPPA Silent p.G1307G 0.14 TCGA-BR-6566-01 9 123877367 123877367 A G CNTRL Splice_Site p.X449_splice 0.22 TCGA-BR-6566-01 9 128061329 128061329 T C GAPVD1 Silent p.R43R 0.09 TCGA-BR-6566-01 9 129595476 129595476 C T ZBTB43 Missense_Mutation p.P230S 0.10 tolerated(0.11) probably_damaging(0.994) TCGA-BR-6566-01 9 129856048 129856048 G T ANGPTL2 Silent p.G325G 0.09 TCGA-BR-6566-01 9 130453135 130453135 A - STXBP1 3'UTR 0.19 TCGA-BR-6566-01 9 130653119 130653119 C T ST6GALNAC6 Silent p.R167R 0.27 TCGA-BR-6566-01 9 130687534 130687534 G - PIP5KL1 Frame_Shift_Del p.Q257Sfs*27 0.11 TCGA-BR-6566-01 9 131198024 131198024 C T CERCAM Missense_Mutation p.A543V 0.13 deleterious(0.02) benign(0.097) TCGA-BR-6566-01 9 131256894 131256895 TA - ODF2 Frame_Shift_Del p.Y620* 0.21 TCGA-BR-6566-01 9 131386637 131386637 A G SPTAN1 Missense_Mutation p.K1955E 0.11 deleterious(0) benign(0.103) TCGA-BR-6566-01 9 131476550 131476550 C - PKN3 Frame_Shift_Del p.C465Afs*43 0.22 TCGA-BR-6566-01 9 132375434 132375434 C T C9orf50 Silent p.P380P 0.23 TCGA-BR-6566-01 9 132632083 132632083 G A USP20 Missense_Mutation p.A509T 0.04 tolerated(0.14) benign(0.007) TCGA-BR-6566-01 9 134357813 134357813 G A PRRC2B Missense_Mutation p.R1680Q 0.21 tolerated(0.35) probably_damaging(0.997) TCGA-BR-6566-01 9 135493751 135493751 G A DDX31 Silent p.H702H 0.07 TCGA-BR-6566-01 9 136131645 136131645 G A RP11-430N14.4 5'Flank 0.25 TCGA-BR-6566-01 9 138710908 138710908 C T CAMSAP1 Missense_Mutation p.V1303M 0.17 tolerated(0.16) benign(0.004) TCGA-BR-6566-01 9 139089228 139089228 G A LHX3 Silent p.P384P 0.14 TCGA-BR-6566-01 9 139265581 139265581 T C CARD9 Silent p.S113S 0.22 TCGA-BR-6566-01 9 139401051 139401051 C T NOTCH1 Silent p.K1314K 0.16 TCGA-BR-6566-01 9 139751877 139751877 C T MAMDC4 Missense_Mutation p.A722V 0.24 tolerated(0.41) possibly_damaging(0.572) TCGA-BR-6566-01 9 139802655 139802655 G - TRAF2 Frame_Shift_Del p.A168Hfs*8 0.30 TCGA-BR-6566-01 9 139820133 139820133 A C TRAF2 Splice_Site p.X430_splice 0.16 TCGA-BR-6566-01 9 140100312 140100312 C T NDOR1 Missense_Mutation p.A28V 0.28 deleterious(0.03) probably_damaging(0.985) TCGA-BR-6566-01 9 140139126 140139126 T C FAM166A Missense_Mutation p.M239V 0.14 tolerated(0.06) benign(0.001) TCGA-BR-6566-01 9 140140222 140140222 C A FAM166A Missense_Mutation p.S47I 0.12 deleterious(0.02) probably_damaging(0.951) TCGA-BR-6566-01 9 14737531 14737531 T A FREM1 Missense_Mutation p.T2135S 0.19 tolerated(0.31) benign(0.035) TCGA-BR-6566-01 9 14823321 14823321 G T FREM1 Missense_Mutation p.A725D 0.05 deleterious(0) benign(0.373) TCGA-BR-6566-01 9 17484353 17484353 A - CNTLN Frame_Shift_Del p.M1308* 0.20 TCGA-BR-6566-01 9 19058129 19058129 A C HAUS6 Missense_Mutation p.L879R 0.04 tolerated(0.12) probably_damaging(0.929) TCGA-BR-6566-01 9 19058474 19058474 C T HAUS6 Missense_Mutation p.S764N 0.08 deleterious(0.05) benign(0.273) TCGA-BR-6566-01 9 2060967 2060967 A G SMARCA2 Missense_Mutation p.K558R 0.08 benign(0.292) TCGA-BR-6566-01 9 2718786 2718786 G A KCNV2 Silent p.Q349Q 0.17 TCGA-BR-6566-01 9 33240248 33240248 C A SPINK4 Silent p.A14A 0.30 TCGA-BR-6566-01 9 33469213 33469213 G A NOL6 Missense_Mutation p.A285V 0.15 tolerated(0.26) benign(0.063) TCGA-BR-6566-01 9 34234267 34234267 A G UBAP1 Missense_Mutation p.T94A 0.23 tolerated(0.54) benign(0.009) TCGA-BR-6566-01 9 34256112 34256112 C T KIF24 Missense_Mutation p.E1165K 0.06 tolerated(0.23) benign(0.002) TCGA-BR-6566-01 9 34657124 34657125 - C IL11RA Frame_Shift_Ins p.R143Pfs*15 0.21 TCGA-BR-6566-01 9 34997369 34997369 A - DNAJB5 3'UTR 0.44 TCGA-BR-6566-01 9 37126908 37126908 C A ZCCHC7 Missense_Mutation p.N193K 0.27 deleterious(0) probably_damaging(0.998) TCGA-BR-6566-01 9 379854 379854 C T DOCK8 Missense_Mutation p.H842Y 0.17 tolerated(0.12) possibly_damaging(0.686) TCGA-BR-6566-01 9 39140608 39140608 T C CNTNAP3 Missense_Mutation p.H595R 0.08 deleterious(0) benign(0.239) TCGA-BR-6566-01 9 42410409 42410410 GA - ANKRD20A2 Frame_Shift_Del p.K803Nfs*11 0.19 TCGA-BR-6566-01 9 70177949 70177949 G A FOXD4L5 Missense_Mutation p.T12I 0.06 deleterious_low_confidence(0.02) probably_damaging(0.969) TCGA-BR-6566-01 9 74347431 74347431 G T TMEM2 Missense_Mutation p.P467T 0.09 deleterious(0.03) benign(0.15) TCGA-BR-6566-01 9 77448921 77448921 C T TRPM6 Missense_Mutation p.G221E 0.18 deleterious(0) probably_damaging(0.967) TCGA-BR-6566-01 9 79981681 79981681 A C VPS13A Missense_Mutation p.E2788D 0.21 tolerated(1) benign(0.003) TCGA-BR-6566-01 9 86586858 86586858 C T HNRNPK Missense_Mutation p.G298S 0.12 tolerated(0.49) possibly_damaging(0.852) TCGA-BR-6566-01 9 88938202 88938202 C A ZCCHC6 Missense_Mutation p.E821D 0.12 tolerated(1) benign(0) TCGA-BR-6566-01 9 95646204 95646204 C T RP11-526D8.7 Intron 0.19 TCGA-BR-6566-01 9 95992150 95992150 C T WNK2 Missense_Mutation p.T285I 0.26 unknown(0) TCGA-BR-6566-01 9 98209617 98209617 G - PTCH1 Frame_Shift_Del p.R1308Efs*64 0.23 TCGA-BR-6566-01 9 990868 990868 C A DMRT3 Missense_Mutation p.R428S 0.22 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-BR-6566-01 X 100505521 100505521 C T DRP2 Silent p.A550A 0.05 TCGA-BR-6566-01 X 100603746 100603746 C T TIMM8A 5'UTR 0.28 TCGA-BR-6566-01 X 102564886 102564886 G A BEX2 Nonsense_Mutation p.R39* 0.20 TCGA-BR-6566-01 X 102755705 102755705 G A RAB40A 5'UTR 0.13 TCGA-BR-6566-01 X 108780202 108780202 G A NXT2 Silent p.P44P 0.28 TCGA-BR-6566-01 X 117788585 117788585 A C DOCK11 Missense_Mutation p.E1572D 0.20 tolerated(0.32) possibly_damaging(0.616) TCGA-BR-6566-01 X 118370568 118370568 T C PGRMC1 Missense_Mutation p.F81S 0.17 deleterious(0) possibly_damaging(0.632) TCGA-BR-6566-01 X 118893082 118893082 T A SOWAHD Missense_Mutation p.V151D 0.19 deleterious(0) probably_damaging(0.952) TCGA-BR-6566-01 X 119293063 119293063 C T RHOXF2 Silent p.G74G 0.23 TCGA-BR-6566-01 X 129189854 129189854 G A BCORL1 Missense_Mutation p.D1627N 0.04 probably_damaging(0.999) TCGA-BR-6566-01 X 12937531 12937531 A - TLR8 Frame_Shift_Del p.N126Tfs*2 0.08 TCGA-BR-6566-01 X 129801658 129801658 C A ENOX2 Missense_Mutation p.E280D 0.13 tolerated(0.67) possibly_damaging(0.704) TCGA-BR-6566-01 X 131203604 131203605 - A MST4 Frame_Shift_Ins p.N234Kfs*12 0.10 TCGA-BR-6566-01 X 132160701 132160701 G A USP26 Silent p.I516I 0.23 TCGA-BR-6566-01 X 134494827 134494827 A G ZNF449 Silent p.R461R 0.14 TCGA-BR-6566-01 X 134715625 134715625 T G DDX26B 3'UTR 0.23 TCGA-BR-6566-01 X 135310894 135310894 C A MAP7D3 Missense_Mutation p.G592C 0.19 deleterious(0) probably_damaging(0.998) TCGA-BR-6566-01 X 140785616 140785616 T G SPANXD 3'UTR 0.19 TCGA-BR-6566-01 X 140985386 140985386 A G MAGEC3 Intron 0.06 TCGA-BR-6566-01 X 140995299 140995299 C A MAGEC1 Missense_Mutation p.D703E 0.27 deleterious_low_confidence(0) benign(0.417) TCGA-BR-6566-01 X 142795423 142795423 C A SPANXN2 Missense_Mutation p.E85D 0.26 tolerated(0.11) possibly_damaging(0.824) TCGA-BR-6566-01 X 142803899 142803899 C T SPANXN2 5'UTR 0.14 TCGA-BR-6566-01 X 144904104 144904104 T G SLITRK2 Missense_Mutation p.V54G 0.14 deleterious(0.02) possibly_damaging(0.696) TCGA-BR-6566-01 X 148038101 148038101 A G AFF2 Silent p.T842T 0.07 TCGA-BR-6566-01 X 149014142 149014142 C T MAGEA8 3'UTR 0.33 TCGA-BR-6566-01 X 14933883 14933883 G - MOSPD2 Frame_Shift_Del 0.14 TCGA-BR-6566-01 X 150156568 150156568 T A HMGB3 3'UTR 0.14 TCGA-BR-6566-01 X 1505589 1505589 T C SLC25A6 Missense_Mutation p.K268R 0.05 tolerated(0.25) benign(0.004) TCGA-BR-6566-01 X 151303514 151303514 T A MAGEA10 Missense_Mutation p.E193D 0.20 deleterious(0.02) possibly_damaging(0.663) TCGA-BR-6566-01 X 151908802 151908803 - G CSAG1 Frame_Shift_Ins p.E16Gfs*11 0.18 TCGA-BR-6566-01 X 152159455 152159455 C T PNMA5 Missense_Mutation p.A230T 0.11 deleterious(0.04) probably_damaging(0.997) TCGA-BR-6566-01 X 152721108 152721108 T G TREX2 5'UTR 0.24 TCGA-BR-6566-01 X 152853714 152853714 G A FAM58A 3'UTR 0.21 TCGA-BR-6566-01 X 152958537 152958537 C T SLC6A8 Silent p.V273V 0.17 TCGA-BR-6566-01 X 152991361 152991361 A G ABCD1 Missense_Mutation p.N214D 0.18 deleterious(0.01) benign(0.284) TCGA-BR-6566-01 X 153141308 153141308 G A L1CAM 5'UTR 0.07 TCGA-BR-6566-01 X 153696164 153696164 C T PLXNA3 Missense_Mutation p.R1214W 0.08 deleterious(0) possibly_damaging(0.711) TCGA-BR-6566-01 X 18622574 18622574 G A CDKL5 Silent p.E510E 0.06 TCGA-BR-6566-01 X 19031992 19031992 G A GPR64 Missense_Mutation p.P304L 0.12 deleterious_low_confidence(0.04) benign(0.137) TCGA-BR-6566-01 X 22012494 22012494 T C SMS 3'UTR 0.28 TCGA-BR-6566-01 X 27998016 27998016 T C DCAF8L1 Missense_Mutation p.D479G 0.18 deleterious(0) probably_damaging(0.968) TCGA-BR-6566-01 X 29959813 29959813 T C IL1RAPL1 Missense_Mutation p.L368P 0.04 deleterious(0) possibly_damaging(0.771) TCGA-BR-6566-01 X 32360319 32360319 C T DMD Silent p.G1940G 0.17 TCGA-BR-6566-01 X 37701055 37701055 C G DYNLT3 Missense_Mutation p.G59A 0.32 tolerated(0.08) benign(0.362) TCGA-BR-6566-01 X 38033445 38033445 T - SRPX Frame_Shift_Del p.N106Tfs*29 0.25 TCGA-BR-6566-01 X 39922031 39922031 C A BCOR Missense_Mutation p.G1381W 0.07 deleterious(0) probably_damaging(0.986) TCGA-BR-6566-01 X 41025133 41025133 T C USP9X Missense_Mutation p.L665S 0.08 deleterious(0) probably_damaging(0.986) TCGA-BR-6566-01 X 47101540 47101540 C T USP11 Silent p.D456D 0.26 TCGA-BR-6566-01 X 47273063 47273063 A G ZNF157 3'UTR 0.32 TCGA-BR-6566-01 X 48826046 48826046 G A KCND1 Silent p.R211R 0.29 TCGA-BR-6566-01 X 48839705 48839705 G A GRIPAP1 Nonsense_Mutation p.R474* 0.34 TCGA-BR-6566-01 X 48891239 48891239 A G TFE3 Splice_Site p.X354_splice 0.25 TCGA-BR-6566-01 X 48931588 48931588 G A PRAF2 Missense_Mutation p.A20V 0.16 tolerated(0.12) benign(0.388) TCGA-BR-6566-01 X 49598479 49598479 C A PAGE4 3'UTR 0.27 TCGA-BR-6566-01 X 53455530 53455530 C T RIBC1 Nonsense_Mutation p.Q167* 0.15 TCGA-BR-6566-01 X 53562382 53562384 CTT - HUWE1 In_Frame_Del p.K4204del 0.15 TCGA-BR-6566-01 X 54069132 54069132 G A PHF8 Silent p.C46C 0.26 TCGA-BR-6566-01 X 54275628 54275628 C T WNK3 Missense_Mutation p.M1051I 0.10 tolerated(0.44) benign(0.001) TCGA-BR-6566-01 X 54360129 54360129 A T WNK3 5'UTR 0.11 TCGA-BR-6566-01 X 54837342 54837342 T C MAGED2 Missense_Mutation p.L209P 0.32 tolerated(0.35) probably_damaging(0.999) TCGA-BR-6566-01 X 55479097 55479097 C T MAGEH1 Missense_Mutation p.A97V 0.17 deleterious_low_confidence(0) probably_damaging(0.96) TCGA-BR-6566-01 X 55514661 55514661 C T USP51 Missense_Mutation p.V238I 0.13 tolerated(0.26) benign(0.039) TCGA-BR-6566-01 X 55748712 55748712 G A RRAGB Missense_Mutation p.A74T 0.05 deleterious(0.02) benign(0.048) TCGA-BR-6566-01 X 63411068 63411068 G T AMER1 Missense_Mutation p.P700H 0.17 tolerated(0.05) probably_damaging(0.994) TCGA-BR-6566-01 X 69626771 69626771 T C KIF4A Missense_Mutation p.F1034S 0.26 tolerated(0.64) benign(0.001) TCGA-BR-6566-01 X 69669640 69669640 T A DLG3 Missense_Mutation p.L212M 0.16 deleterious(0.03) possibly_damaging(0.894) TCGA-BR-6566-01 X 70349689 70349689 G A MED12 Missense_Mutation p.R1284H 0.22 possibly_damaging(0.836) TCGA-BR-6566-01 X 70767837 70767837 A G OGT Silent p.Q204Q 0.08 TCGA-BR-6566-01 X 9693832 9693832 T C GPR143 Missense_Mutation p.N390S 0.15 tolerated_low_confidence(0.34) benign(0.011) TCGA-BR-6705-01 10 103371080 103371080 T A FBXW4 Missense_Mutation p.N403Y 0.14 deleterious(0.03) benign(0.43) TCGA-BR-6705-01 10 108389026 108389026 G A SORCS1 Missense_Mutation p.R866C 0.14 deleterious(0) probably_damaging(0.988) TCGA-BR-6705-01 10 73544820 73544820 C T CDH23 Missense_Mutation p.A1897V 0.06 tolerated(0.09) benign(0.06) TCGA-BR-6705-01 11 101347160 101347160 G T TRPC6 Missense_Mutation p.A539E 0.08 deleterious(0) possibly_damaging(0.847) TCGA-BR-6705-01 11 10622545 10622545 G A MRVI1 Missense_Mutation p.T646M 0.10 tolerated(0.13) probably_damaging(0.999) TCGA-BR-6705-01 11 119004822 119004822 C T HINFP Missense_Mutation p.R390W 0.14 deleterious(0) probably_damaging(0.964) TCGA-BR-6705-01 11 119052840 119052840 G A NLRX1 Missense_Mutation p.V798M 0.10 tolerated(0.21) benign(0.104) TCGA-BR-6705-01 11 55038032 55038032 A G TRIM48 3'UTR 0.13 TCGA-BR-6705-01 11 56020552 56020552 A T OR5T3 Missense_Mutation p.S293C 0.06 deleterious(0) probably_damaging(0.98) TCGA-BR-6705-01 11 65270134 65270134 T A MALAT1 RNA 0.07 TCGA-BR-6705-01 11 68475799 68475799 A G MTL5 Missense_Mutation p.S502P 0.06 deleterious(0) possibly_damaging(0.794) TCGA-BR-6705-01 11 68673617 68673617 G A IGHMBP2 Missense_Mutation p.R56H 0.10 tolerated(0.06) benign(0.033) TCGA-BR-6705-01 11 84996402 84996402 T G DLG2 Missense_Mutation p.Q16H 0.08 deleterious_low_confidence(0) benign(0.089) TCGA-BR-6705-01 12 101333096 101333096 C T ANO4 Missense_Mutation p.A20V 0.09 tolerated_low_confidence(0.22) benign(0.003) TCGA-BR-6705-01 12 109845697 109845697 C T MYO1H Silent p.I362I 0.13 TCGA-BR-6705-01 12 25378594 25378594 C G KRAS Missense_Mutation p.R135T 0.05 deleterious(0.02) benign(0.021) TCGA-BR-6705-01 12 2910480 2910480 C T FKBP4 Silent p.L410L 0.46 TCGA-BR-6705-01 12 80735894 80735894 G A OTOGL Silent p.Q1730Q 0.20 TCGA-BR-6705-01 13 99116043 99116043 A G STK24 Silent p.N289N 0.08 TCGA-BR-6705-01 14 106208416 106208416 C T IGHG1 Missense_Mutation p.V162M 0.06 tolerated(0.05) possibly_damaging(0.648) TCGA-BR-6705-01 14 22891904 22891904 G A TRDV2 Silent p.K72K 0.12 TCGA-BR-6705-01 14 33293356 33293356 T G AKAP6 Missense_Mutation p.L2113V 0.08 deleterious(0) probably_damaging(0.996) TCGA-BR-6705-01 14 69787487 69787487 G A GALNT16 Silent p.L79L 0.05 TCGA-BR-6705-01 14 77242566 77242566 G A VASH1 Missense_Mutation p.D288N 0.10 tolerated(0.12) benign(0.087) TCGA-BR-6705-01 15 25351694 25351694 A C SNORD116-29 RNA 0.09 TCGA-BR-6705-01 16 3100096 3100096 C T MMP25 Missense_Mutation p.R107W 0.15 deleterious(0) probably_damaging(1) TCGA-BR-6705-01 16 31371109 31371109 C T ITGAX Silent p.F173F 0.09 TCGA-BR-6705-01 16 3274181 3274181 C T ZNF200 Missense_Mutation p.R300Q 0.07 tolerated(0.06) probably_damaging(0.992) TCGA-BR-6705-01 16 354351 354351 G A AXIN1 Missense_Mutation p.R403W 0.08 deleterious(0) probably_damaging(1) TCGA-BR-6705-01 17 32598890 32598890 T C CCL7 3'UTR 0.25 TCGA-BR-6705-01 17 47241497 47241497 C T B4GALNT2 Missense_Mutation p.R332C 0.08 deleterious(0.01) possibly_damaging(0.477) TCGA-BR-6705-01 17 56356886 56356886 G C MPO Missense_Mutation p.N182K 0.08 deleterious(0) possibly_damaging(0.702) TCGA-BR-6705-01 17 74928759 74928759 G A MGAT5B Missense_Mutation p.V453M 0.07 deleterious(0) probably_damaging(0.995) TCGA-BR-6705-01 17 8701293 8701293 G A MFSD6L Silent p.V382V 0.12 TCGA-BR-6705-01 18 13826438 13826438 C T MC5R Missense_Mutation p.A225V 0.07 tolerated(0.6) benign(0.053) TCGA-BR-6705-01 18 22805350 22805350 T G ZNF521 Silent p.T844T 0.05 TCGA-BR-6705-01 18 39618752 39618752 G A PIK3C3 Missense_Mutation p.R659Q 0.09 tolerated(0.09) possibly_damaging(0.501) TCGA-BR-6705-01 19 18183067 18183067 C T IL12RB1 Silent p.P292P 0.28 TCGA-BR-6705-01 19 18898331 18898331 G A COMP Silent p.G368G 0.05 TCGA-BR-6705-01 19 31767522 31767522 G A TSHZ3 Silent p.H1059H 0.07 TCGA-BR-6705-01 19 38103644 38103644 T G ZNF540 Missense_Mutation p.I488S 0.10 deleterious(0) possibly_damaging(0.637) TCGA-BR-6705-01 19 4219595 4219595 G A ANKRD24 Missense_Mutation p.R1004H 0.06 deleterious(0.02) probably_damaging(0.938) TCGA-BR-6705-01 19 57839487 57839487 G C ZNF543 Silent p.R219R 0.06 TCGA-BR-6705-01 19 58452476 58452476 C G ZNF256 Missense_Mutation p.R567T 0.08 deleterious(0.02) benign(0.159) TCGA-BR-6705-01 19 59010878 59010878 G A SLC27A5 Missense_Mutation p.R550C 0.05 deleterious(0.02) possibly_damaging(0.565) TCGA-BR-6705-01 19 9056390 9056390 A T MUC16 Silent p.T10352T 0.07 TCGA-BR-6705-01 1 12008083 12008083 C T PLOD1 Missense_Mutation p.R43C 0.05 deleterious(0) probably_damaging(0.979) TCGA-BR-6705-01 1 146757013 146757013 G T CHD1L Missense_Mutation p.G623C 0.04 deleterious(0.03) possibly_damaging(0.827) TCGA-BR-6705-01 1 158151974 158151974 T G CD1D Missense_Mutation p.L161V 0.17 tolerated(0.6) benign(0.001) TCGA-BR-6705-01 1 158449804 158449804 C A OR10R2 Missense_Mutation p.A46D 0.07 deleterious(0.03) benign(0.078) TCGA-BR-6705-01 1 158646087 158646087 T G SPTA1 Splice_Site p.X320_splice 0.09 TCGA-BR-6705-01 1 224345314 224345314 C T FBXO28 Nonsense_Mutation p.R325* 0.05 TCGA-BR-6705-01 1 248129101 248129101 C A OR2AK2 Nonsense_Mutation p.C156* 0.18 TCGA-BR-6705-01 1 248308962 248308962 T C OR2M5 Silent p.S171S 0.04 TCGA-BR-6705-01 1 26288445 26288445 T C PAFAH2 3'UTR 0.09 TCGA-BR-6705-01 1 29391555 29391555 A T EPB41 Missense_Mutation p.K690M 0.08 deleterious(0) probably_damaging(1) TCGA-BR-6705-01 1 38511541 38511541 G T POU3F1 Missense_Mutation p.T292N 0.09 deleterious(0) possibly_damaging(0.703) TCGA-BR-6705-01 20 25004206 25004206 C T ACSS1 Missense_Mutation p.V235M 0.14 deleterious(0) probably_damaging(0.977) TCGA-BR-6705-01 21 31797958 31797958 A G KRTAP13-3 Silent p.S91S 0.11 TCGA-BR-6705-01 21 40186841 40186841 T A ETS2 Missense_Mutation p.F147L 0.12 deleterious(0) probably_damaging(0.997) TCGA-BR-6705-01 22 17472913 17472913 A C GAB4 Missense_Mutation p.F110V 0.10 deleterious(0) possibly_damaging(0.849) TCGA-BR-6705-01 22 31533854 31533854 C T PLA2G3 Missense_Mutation p.R303Q 0.06 tolerated(0.75) benign(0.001) TCGA-BR-6705-01 22 38120424 38120424 C T TRIOBP Nonsense_Mutation p.R621* 0.06 TCGA-BR-6705-01 2 157407168 157407168 C T GPD2 Missense_Mutation p.T294M 0.13 deleterious(0) probably_damaging(0.999) TCGA-BR-6705-01 2 179610671 179610671 T C TTN Intron 0.08 TCGA-BR-6705-01 2 21265256 21265256 T G APOB Missense_Mutation p.S72R 0.12 probably_damaging(0.998) TCGA-BR-6705-01 2 213403244 213403244 G T ERBB4 Missense_Mutation p.A4E 0.07 tolerated_low_confidence(0.27) benign(0.184) TCGA-BR-6705-01 2 44566387 44566387 C T PREPL Missense_Mutation p.V290I 0.09 tolerated(0.33) benign(0.016) TCGA-BR-6705-01 2 54482198 54482198 C G TSPYL6 Missense_Mutation p.R364T 0.08 deleterious(0.02) possibly_damaging(0.456) TCGA-BR-6705-01 2 73316188 73316188 G C RAB11FIP5 Silent p.G229G 0.06 TCGA-BR-6705-01 2 73717086 73717086 G A ALMS1 Missense_Mutation p.G2666D 0.13 benign(0.076) TCGA-BR-6705-01 3 111799889 111799889 C T TMPRSS7 Silent p.N704N 0.07 TCGA-BR-6705-01 3 134920329 134920329 A T EPHB1 Missense_Mutation p.Q715L 0.06 deleterious(0.01) benign(0.205) TCGA-BR-6705-01 3 146311762 146311762 G C PLSCR5 Missense_Mutation p.T133R 0.05 tolerated(0.54) benign(0.202) TCGA-BR-6705-01 3 160945104 160945104 G C NMD3 Missense_Mutation p.L83F 0.11 deleterious(0) possibly_damaging(0.907) TCGA-BR-6705-01 3 16419336 16419336 A G RFTN1 Missense_Mutation p.S239P 0.13 tolerated(0.29) benign(0.002) TCGA-BR-6705-01 3 167254760 167254760 A G WDR49 Missense_Mutation p.F266L 0.15 tolerated(0.32) benign(0.003) TCGA-BR-6705-01 3 188327328 188327328 G C LPP Missense_Mutation p.G270A 0.06 tolerated(0.45) benign(0.417) TCGA-BR-6705-01 3 193007764 193007764 A T ATP13A5 Missense_Mutation p.F978Y 0.12 deleterious(0) benign(0.238) TCGA-BR-6705-01 3 38591857 38591857 G A SCN5A Silent p.A2002A 0.06 TCGA-BR-6705-01 3 66430710 66430710 G C LRIG1 Missense_Mutation p.L1087V 0.09 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-BR-6705-01 3 9952952 9952952 A G IL17RE Missense_Mutation p.N347S 0.05 tolerated(0.06) benign(0.298) TCGA-BR-6705-01 4 10445492 10445492 A C ZNF518B Missense_Mutation p.S821A 0.06 tolerated(0.09) benign(0.003) TCGA-BR-6705-01 4 110268661 110268661 C A SEC24B-AS1 RNA 0.12 TCGA-BR-6705-01 4 49005981 49005981 C T CWH43 Silent p.Y344Y 0.14 TCGA-BR-6705-01 4 62903555 62903555 G A LPHN3 Missense_Mutation p.R1165H 0.09 tolerated(0.05) probably_damaging(0.988) TCGA-BR-6705-01 4 76924788 76924788 C T CXCL9 Missense_Mutation p.R114Q 0.05 deleterious(0.04) unknown(0) TCGA-BR-6705-01 5 156810315 156810315 A C CYFIP2 Missense_Mutation p.K1026T 0.06 deleterious(0.01) benign(0.411) TCGA-BR-6705-01 5 15928114 15928114 C T FBXL7 Silent p.T81T 0.08 TCGA-BR-6705-01 5 33951726 33951726 G A SLC45A2 Silent p.Y363Y 0.07 TCGA-BR-6705-01 5 3599410 3599410 T C IRX1 Silent p.A116A 0.06 TCGA-BR-6705-01 5 36226645 36226645 C T NADK2 Missense_Mutation p.R137H 0.05 deleterious(0) probably_damaging(0.975) TCGA-BR-6705-01 5 60050537 60050537 G T ELOVL7 Missense_Mutation p.L254I 0.09 tolerated(0.34) possibly_damaging(0.771) TCGA-BR-6705-01 5 66459277 66459277 G A MAST4 Missense_Mutation p.V1424I 0.12 benign(0.406) TCGA-BR-6705-01 5 79034738 79034738 T A CMYA5 Missense_Mutation p.F3384I 0.11 benign(0.204) TCGA-BR-6705-01 6 117642553 117642553 C T ROS1 Nonsense_Mutation p.W1882* 0.06 TCGA-BR-6705-01 6 26217233 26217233 G A HIST1H2AE Missense_Mutation p.A11T 0.13 tolerated_low_confidence(0.17) unknown(0) TCGA-BR-6705-01 6 46979887 46979887 T C GPR110 Silent p.S324S 0.05 TCGA-BR-6705-01 6 55223692 55223692 C G GFRAL Missense_Mutation p.H236Q 0.10 tolerated(0.06) benign(0.158) TCGA-BR-6705-01 7 126173574 126173574 A G GRM8 Missense_Mutation p.L621P 0.14 deleterious(0) probably_damaging(0.917) TCGA-BR-6705-01 7 157046671 157046671 G A UBE3C Silent p.G906G 0.16 TCGA-BR-6705-01 7 21847621 21847621 G T DNAH11 Missense_Mutation p.R3436L 0.28 probably_damaging(0.997) TCGA-BR-6705-01 7 74005258 74005258 C T GTF2IRD1 Missense_Mutation p.R867W 0.18 deleterious(0) probably_damaging(0.989) TCGA-BR-6705-01 7 90042682 90042682 C T CLDN12 Missense_Mutation p.S231F 0.16 deleterious(0) probably_damaging(0.997) TCGA-BR-6705-01 8 131916210 131916210 C A ADCY8 Missense_Mutation p.R573S 0.07 deleterious(0) possibly_damaging(0.793) TCGA-BR-6705-01 9 119114988 119114988 A G PAPPA Missense_Mutation p.N1323S 0.08 tolerated(0.75) possibly_damaging(0.621) TCGA-BR-6705-01 9 119115107 119115107 C T PAPPA Nonsense_Mutation p.R1363* 0.07 TCGA-BR-6705-01 9 128074745 128074745 A C GAPVD1 Missense_Mutation p.S486R 0.14 tolerated(0.11) benign(0.167) TCGA-BR-6705-01 9 15468792 15468792 A C PSIP1 Missense_Mutation p.L419W 0.14 deleterious(0) probably_damaging(0.999) TCGA-BR-6705-01 9 32632187 32632187 T C TAF1L Missense_Mutation p.K1131E 0.08 deleterious(0) possibly_damaging(0.533) TCGA-BR-6705-01 9 84603746 84603746 C G SPATA31D1 Missense_Mutation p.L5V 0.10 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-BR-6705-01 X 10450560 10450560 G A MID1 Missense_Mutation p.H325Y 0.05 tolerated(0.3) benign(0.004) TCGA-BR-6705-01 X 117033040 117033040 C T KLHL13 Missense_Mutation p.R603H 0.09 deleterious(0.02) probably_damaging(0.988) TCGA-BR-6705-01 X 134156492 134156492 C T FAM127C 5'UTR 0.08 TCGA-BR-6705-01 X 73071325 73071325 C T XIST RNA 0.04 TCGA-BR-6705-01 X 92928030 92928030 A G NAP1L3 Silent p.L92L 0.15 TCGA-BR-6706-01 10 101802248 101802248 T G CPN1 Missense_Mutation p.K438T 0.08 deleterious(0.02) possibly_damaging(0.478) TCGA-BR-6706-01 10 103919991 103919991 T G NOLC1 Missense_Mutation p.D330E 0.12 deleterious_low_confidence(0) benign(0.417) TCGA-BR-6706-01 10 104416988 104416988 C T TRIM8 Silent p.S511S 0.09 TCGA-BR-6706-01 10 118236234 118236234 A C PNLIPRP3 Missense_Mutation p.S415R 0.08 deleterious(0.04) benign(0.014) TCGA-BR-6706-01 10 119003515 119003515 A C SLC18A2 Missense_Mutation p.K52T 0.14 tolerated(0.05) benign(0.016) TCGA-BR-6706-01 10 123843481 123843481 T C TACC2 Missense_Mutation p.V489A 0.11 benign(0.05) TCGA-BR-6706-01 10 21139351 21139351 T G NEBL Silent p.S363S 0.08 TCGA-BR-6706-01 10 50724274 50724274 T G ERCC6-PGBD3 Missense_Mutation p.K764T 0.18 deleterious_low_confidence(0) unknown(0) TCGA-BR-6706-01 10 55700715 55700715 A G PCDH15 Missense_Mutation p.L1048P 0.06 tolerated(0.26) probably_damaging(0.917) TCGA-BR-6706-01 10 99019212 99019212 A C ARHGAP19 Missense_Mutation p.S263A 0.12 deleterious(0.01) possibly_damaging(0.842) TCGA-BR-6706-01 11 113674571 113674571 C T USP28 Missense_Mutation p.R896Q 0.13 deleterious(0) probably_damaging(0.999) TCGA-BR-6706-01 11 46896598 46896598 G A LRP4 Missense_Mutation p.P1328S 0.12 tolerated(0.12) benign(0.004) TCGA-BR-6706-01 11 4945175 4945175 A C OR51G1 Missense_Mutation p.L132R 0.06 deleterious(0) probably_damaging(1) TCGA-BR-6706-01 11 55433389 55433389 T A OR4C6 Missense_Mutation p.F249L 0.05 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-BR-6706-01 11 55563569 55563569 T C OR5D14 Missense_Mutation p.F180L 0.13 tolerated(0.19) benign(0.006) TCGA-BR-6706-01 11 5969389 5969389 A C OR56A3 Missense_Mutation p.K271N 0.09 tolerated(0.35) benign(0.021) TCGA-BR-6706-01 11 59949151 59949151 T G MS4A6A Missense_Mutation p.N45T 0.11 deleterious(0.02) possibly_damaging(0.813) TCGA-BR-6706-01 11 60561521 60561521 T C MS4A10 Missense_Mutation p.L146P 0.13 deleterious(0) probably_damaging(0.998) TCGA-BR-6706-01 11 71724063 71724063 G A NUMA1 Nonsense_Mutation p.R1496* 0.10 TCGA-BR-6706-01 11 94113847 94113847 A T GPR83 Missense_Mutation p.L247H 0.16 deleterious(0) probably_damaging(1) TCGA-BR-6706-01 12 100904824 100904824 G A NR1H4 Silent p.A126A 0.10 TCGA-BR-6706-01 12 104144357 104144357 G A STAB2 Missense_Mutation p.G2147S 0.16 deleterious(0.02) benign(0.212) TCGA-BR-6706-01 12 109294207 109294207 T C DAO Missense_Mutation p.Y314H 0.08 tolerated(0.53) probably_damaging(0.941) TCGA-BR-6706-01 12 109959319 109959319 A G UBE3B Missense_Mutation p.E776G 0.13 deleterious(0) probably_damaging(0.975) TCGA-BR-6706-01 12 40716140 40716140 A C LRRK2 Missense_Mutation p.Q1779H 0.05 tolerated(0.19) possibly_damaging(0.728) TCGA-BR-6706-01 12 44782372 44782372 T G TMEM117 Missense_Mutation p.L488V 0.11 tolerated_low_confidence(0.13) probably_damaging(0.986) TCGA-BR-6706-01 12 56478854 56478854 G T ERBB3 Missense_Mutation p.V104L 0.10 deleterious(0.03) benign(0.22) TCGA-BR-6706-01 12 56525562 56525562 C T ESYT1 Silent p.T278T 0.10 TCGA-BR-6706-01 12 6976707 6976707 C T TPI1 Missense_Mutation p.L30F 0.19 tolerated_low_confidence(0.08) probably_damaging(0.992) TCGA-BR-6706-01 12 81101582 81101582 A G MYF6 Silent p.A28A 0.10 TCGA-BR-6706-01 12 8998053 8998053 A C A2ML1 Missense_Mutation p.S498R 0.11 tolerated(0.58) benign(0.001) TCGA-BR-6706-01 13 101944618 101944618 A G NALCN Missense_Mutation p.F300S 0.13 deleterious(0.03) benign(0.444) TCGA-BR-6706-01 13 25049733 25049733 A C PARP4 Missense_Mutation p.D597E 0.14 tolerated(0.2) benign(0.097) TCGA-BR-6706-01 14 22783282 22783282 A T TRAV40 Missense_Mutation p.K83I 0.07 deleterious(0.03) benign(0.055) TCGA-BR-6706-01 14 24785153 24785153 T A LTB4R Missense_Mutation p.V99D 0.09 deleterious(0) probably_damaging(0.989) TCGA-BR-6706-01 14 36096777 36096777 T C RALGAPA1 Missense_Mutation p.S1620G 0.12 tolerated(0.37) benign(0.001) TCGA-BR-6706-01 14 44975246 44975246 T C FSCB Silent p.K315K 0.05 TCGA-BR-6706-01 14 65544747 65544747 C T MAX Missense_Mutation p.R60Q 0.11 deleterious(0) probably_damaging(0.998) TCGA-BR-6706-01 14 70714391 70714391 T A ADAM21P1 RNA 0.05 TCGA-BR-6706-01 14 94007143 94007143 A G UNC79 Missense_Mutation p.Q320R 0.06 tolerated(1) probably_damaging(0.99) TCGA-BR-6706-01 14 95570115 95570115 C T DICER1 Silent p.K1206K 0.07 TCGA-BR-6706-01 14 95912417 95912417 C G SYNE3 Missense_Mutation p.M487I 0.10 deleterious(0.02) benign(0.011) TCGA-BR-6706-01 15 102346405 102346405 T C OR4F6 Silent p.A161A 0.14 TCGA-BR-6706-01 15 22382731 22382731 T G OR4N4 Missense_Mutation p.S87A 0.05 tolerated(0.34) benign(0.005) TCGA-BR-6706-01 15 25456941 25456941 T A SNORD115-22 3'Flank 0.07 TCGA-BR-6706-01 15 34533513 34533513 T C SLC12A6 Missense_Mutation p.I730V 0.06 deleterious(0.02) possibly_damaging(0.62) TCGA-BR-6706-01 15 40094058 40094058 A G GPR176 Missense_Mutation p.F275L 0.16 deleterious(0) probably_damaging(0.999) TCGA-BR-6706-01 15 41679693 41679693 T G NDUFAF1 Missense_Mutation p.E311D 0.06 deleterious(0) probably_damaging(0.999) TCGA-BR-6706-01 15 42040962 42040962 A T MGA Silent p.T1780T 0.09 TCGA-BR-6706-01 15 78566640 78566640 A G DNAJA4 Missense_Mutation p.I203V 0.10 tolerated(0.13) benign(0.098) TCGA-BR-6706-01 16 47117496 47117496 T C NETO2 Missense_Mutation p.D405G 0.09 tolerated(0.29) benign(0.008) TCGA-BR-6706-01 16 55613109 55613109 T G LPCAT2 Missense_Mutation p.V468G 0.07 deleterious(0.03) benign(0.049) TCGA-BR-6706-01 16 57597818 57597818 G A GPR114 Missense_Mutation p.R119Q 0.09 tolerated(0.84) benign(0.004) TCGA-BR-6706-01 16 66565325 66565325 A C TK2 Silent p.T111T 0.09 TCGA-BR-6706-01 16 70710872 70710872 C T MTSS1L Missense_Mutation p.D248N 0.10 deleterious(0) probably_damaging(0.998) TCGA-BR-6706-01 16 88779164 88779164 G A CTU2 Silent p.P196P 0.14 TCGA-BR-6706-01 17 293034 293034 G A FAM101B Missense_Mutation p.T119M 0.14 tolerated(0.17) benign(0.05) TCGA-BR-6706-01 17 37619151 37619152 - T CDK12 Frame_Shift_Ins p.P277Sfs*21 0.13 TCGA-BR-6706-01 17 47656222 47656222 T G NXPH3 Missense_Mutation p.S107A 0.06 tolerated(0.35) probably_damaging(0.999) TCGA-BR-6706-01 17 67087355 67087355 T C ABCA6 Missense_Mutation p.S1153G 0.08 tolerated(0.42) benign(0.005) TCGA-BR-6706-01 17 79167799 79167799 C T AZI1 Missense_Mutation p.E750K 0.18 deleterious(0) probably_damaging(0.932) TCGA-BR-6706-01 18 21086966 21086966 A C C18orf8 Missense_Mutation p.K71T 0.04 deleterious(0) probably_damaging(0.995) TCGA-BR-6706-01 18 22807019 22807019 T C ZNF521 Missense_Mutation p.E288G 0.08 deleterious(0.01) probably_damaging(0.998) TCGA-BR-6706-01 18 39647433 39647433 G C PIK3C3 Missense_Mutation p.A869P 0.10 deleterious(0) probably_damaging(1) TCGA-BR-6706-01 18 50731590 50731590 A G DCC Silent p.Q526Q 0.10 TCGA-BR-6706-01 18 56936342 56936342 T G RAX Missense_Mutation p.K312T 0.13 deleterious(0) possibly_damaging(0.746) TCGA-BR-6706-01 18 67684867 67684867 C T RTTN Missense_Mutation p.G2066E 0.10 deleterious(0.02) probably_damaging(0.99) TCGA-BR-6706-01 19 13226979 13226979 C T TRMT1 Missense_Mutation p.E79K 0.08 deleterious(0) possibly_damaging(0.854) TCGA-BR-6706-01 19 1465645 1465645 A G APC2 Missense_Mutation p.D782G 0.14 possibly_damaging(0.557) TCGA-BR-6706-01 19 15079169 15079169 C T SLC1A6 Missense_Mutation p.R165Q 0.21 tolerated(0.19) benign(0.3) TCGA-BR-6706-01 19 15918794 15918795 AG - OR10H1 Frame_Shift_Del p.S18Cfs*215 0.11 TCGA-BR-6706-01 19 15989663 15989663 T G CYP4F2 Missense_Mutation p.D494A 0.13 deleterious(0.03) benign(0.163) TCGA-BR-6706-01 19 17951088 17951088 C T JAK3 Missense_Mutation p.R402H 0.10 deleterious(0) possibly_damaging(0.718) TCGA-BR-6706-01 19 18547246 18547246 G A ISYNA1 Missense_Mutation p.A218V 0.12 deleterious(0.01) benign(0.108) TCGA-BR-6706-01 19 31040061 31040061 G T ZNF536 Missense_Mutation p.D1179Y 0.08 deleterious_low_confidence(0) possibly_damaging(0.868) TCGA-BR-6706-01 19 38779813 38779813 G A SPINT2 Missense_Mutation p.D125N 0.11 tolerated(0.24) benign(0.024) TCGA-BR-6706-01 19 42479939 42479939 A G ATP1A3 Missense_Mutation p.V715A 0.10 deleterious(0.02) probably_damaging(0.999) TCGA-BR-6706-01 19 49705384 49705384 C T TRPM4 Silent p.L1039L 0.09 TCGA-BR-6706-01 19 50910659 50910659 G A POLD1 Missense_Mutation p.E588K 0.24 deleterious(0) probably_damaging(0.96) TCGA-BR-6706-01 19 52857592 52857592 A C ZNF610 Missense_Mutation p.K93N 0.23 tolerated(0.27) benign(0) TCGA-BR-6706-01 19 53645784 53645784 T A ZNF347 Missense_Mutation p.K100N 0.15 deleterious(0.01) benign(0.139) TCGA-BR-6706-01 19 55112422 55112422 T G LILRA1 3'UTR 0.31 TCGA-BR-6706-01 19 55284967 55284967 T G KIR2DL1 Missense_Mutation p.F85V 0.23 deleterious(0.03) probably_damaging(0.923) TCGA-BR-6706-01 19 56243496 56243496 T G NLRP9 Missense_Mutation p.E567D 0.16 tolerated(0.25) benign(0.022) TCGA-BR-6706-01 19 9018538 9018538 A C MUC16 Missense_Mutation p.F12546V 0.09 benign(0.04) TCGA-BR-6706-01 19 9226256 9226256 G T OR7G1 Missense_Mutation p.L62I 0.09 deleterious(0) benign(0.031) TCGA-BR-6706-01 19 9453044 9453044 T G ZNF559 Missense_Mutation p.F306C 0.17 deleterious(0) possibly_damaging(0.893) TCGA-BR-6706-01 1 115828920 115828920 T G NGF Missense_Mutation p.N166T 0.12 deleterious(0.01) probably_damaging(0.988) TCGA-BR-6706-01 1 117119904 117119904 G A IGSF3 3'UTR 0.19 TCGA-BR-6706-01 1 12855688 12855688 A C PRAMEF1 Missense_Mutation p.K323T 0.10 deleterious(0.02) possibly_damaging(0.691) TCGA-BR-6706-01 1 151384863 151384863 T G POGZ Missense_Mutation p.K563T 0.12 deleterious(0) possibly_damaging(0.451) TCGA-BR-6706-01 1 152080591 152080591 C T TCHH Missense_Mutation p.R1701H 0.10 unknown(0) TCGA-BR-6706-01 1 156779580 156779580 A G SH2D2A Missense_Mutation p.L206P 0.11 deleterious(0.04) probably_damaging(0.996) TCGA-BR-6706-01 1 157668201 157668201 C T FCRL3 Missense_Mutation p.D91N 0.09 tolerated(0.22) probably_damaging(0.993) TCGA-BR-6706-01 1 159888742 159888742 A G TAGLN2 Intron 0.07 TCGA-BR-6706-01 1 196758794 196758794 C T CFHR3 Intron 0.17 TCGA-BR-6706-01 1 217793304 217793304 G A GPATCH2 Silent p.A198A 0.08 TCGA-BR-6706-01 1 238049070 238049070 A C ZP4 Missense_Mutation p.L319R 0.08 deleterious(0) probably_damaging(0.999) TCGA-BR-6706-01 1 248113081 248113081 T C OR2L8 Missense_Mutation p.C308R 0.11 tolerated(0.11) benign(0.005) TCGA-BR-6706-01 1 3427384 3427384 G A MEGF6 Silent p.A399A 0.08 TCGA-BR-6706-01 1 35369893 35369893 A G DLGAP3 Silent p.T364T 0.15 TCGA-BR-6706-01 1 36926911 36926911 A G MRPS15 Missense_Mutation p.V85A 0.11 tolerated(0.08) benign(0.26) TCGA-BR-6706-01 1 40929053 40929053 A G ZFP69B Missense_Mutation p.Q466R 0.09 deleterious(0.04) benign(0.002) TCGA-BR-6706-01 1 64100648 64100648 G A PGM1 Silent p.K295K 0.08 TCGA-BR-6706-01 1 7886602 7886602 T C PER3 Missense_Mutation p.S666P 0.07 tolerated(0.63) possibly_damaging(0.665) TCGA-BR-6706-01 1 85551632 85551632 A C WDR63 Missense_Mutation p.N220T 0.11 tolerated(1) benign(0.007) TCGA-BR-6706-01 20 11904367 11904367 T G BTBD3 3'UTR 0.11 TCGA-BR-6706-01 20 23016968 23016968 T G SSTR4 Missense_Mutation p.L283R 0.12 deleterious(0) probably_damaging(0.99) TCGA-BR-6706-01 20 23383641 23383641 T C NAPB Missense_Mutation p.K56R 0.11 deleterious(0.03) benign(0.016) TCGA-BR-6706-01 20 238424 238424 A G DEFB132 Missense_Mutation p.K2R 0.10 tolerated(0.07) possibly_damaging(0.636) TCGA-BR-6706-01 20 2463798 2463798 T C ZNF343 3'UTR 0.14 TCGA-BR-6706-01 20 35064645 35064645 G C DLGAP4 Missense_Mutation p.S378T 0.05 deleterious(0.01) benign(0.281) TCGA-BR-6706-01 20 36572448 36572448 C T VSTM2L Silent p.D136D 0.09 TCGA-BR-6706-01 20 402813 402813 G A RBCK1 Silent p.E320E 0.15 TCGA-BR-6706-01 20 40739009 40739009 T - PTPRT Frame_Shift_Del p.N1073Tfs*8 0.12 TCGA-BR-6706-01 20 47267989 47267989 C A PREX1 Missense_Mutation p.C867F 0.11 deleterious(0.01) possibly_damaging(0.52) TCGA-BR-6706-01 20 50406626 50406626 T C SALL4 Missense_Mutation p.K799R 0.07 tolerated(0.94) benign(0.015) TCGA-BR-6706-01 20 55027707 55027707 A T CASS4 Missense_Mutation p.E492V 0.18 deleterious(0) possibly_damaging(0.588) TCGA-BR-6706-01 20 58564160 58564160 G T CDH26 Missense_Mutation p.A409S 0.10 tolerated(0.19) possibly_damaging(0.56) TCGA-BR-6706-01 20 62505127 62505128 AG - TPD52L2 Frame_Shift_Del p.N92Pfs*7 0.17 TCGA-BR-6706-01 20 62658332 62658332 C T PRPF6 Intron 0.09 TCGA-BR-6706-01 21 15561478 15561478 T C LIPI Silent p.E124E 0.07 TCGA-BR-6706-01 21 28296442 28296442 T G ADAMTS5 Missense_Mutation p.K908T 0.07 tolerated(0.09) probably_damaging(0.999) TCGA-BR-6706-01 21 32638350 32638350 T G TIAM1 Missense_Mutation p.Q313H 0.10 tolerated(0.14) benign(0.005) TCGA-BR-6706-01 21 33371499 33371499 T A HUNK 3'UTR 0.14 TCGA-BR-6706-01 22 17688091 17688091 A C CECR1 Missense_Mutation p.F138V 0.09 tolerated(0.07) benign(0.002) TCGA-BR-6706-01 22 23437912 23437912 A C GNAZ Missense_Mutation p.K10N 0.09 deleterious(0.03) possibly_damaging(0.825) TCGA-BR-6706-01 22 29445296 29445296 A T ZNRF3 Missense_Mutation p.N376I 0.10 tolerated(0.11) possibly_damaging(0.616) TCGA-BR-6706-01 22 44063009 44063009 T A EFCAB6 Missense_Mutation p.K653I 0.12 deleterious(0.01) probably_damaging(0.91) TCGA-BR-6706-01 22 46655349 46655349 C T PKDREJ Missense_Mutation p.G1291R 0.10 deleterious(0) probably_damaging(0.995) TCGA-BR-6706-01 2 102625053 102625053 G A IL1R2 Missense_Mutation p.V6M 0.08 tolerated(0.54) benign(0.014) TCGA-BR-6706-01 2 108477254 108477254 A G RGPD4 Silent p.R597R 0.10 TCGA-BR-6706-01 2 109513596 109513596 T G EDAR Missense_Mutation p.K372Q 0.08 deleterious(0) probably_damaging(0.998) TCGA-BR-6706-01 2 115200414 115200414 A G DPP10 Missense_Mutation p.K20R 0.11 tolerated(0.11) benign(0.001) TCGA-BR-6706-01 2 118698836 118698836 T C CCDC93 Missense_Mutation p.K484R 0.10 deleterious(0.04) benign(0.01) TCGA-BR-6706-01 2 135206285 135206285 A C MGAT5 Missense_Mutation p.K698T 0.08 tolerated(0.65) benign(0.001) TCGA-BR-6706-01 2 138208477 138208477 A G THSD7B Missense_Mutation p.S1008G 0.08 deleterious(0.02) unknown(0) TCGA-BR-6706-01 2 141625218 141625218 T G LRP1B Missense_Mutation p.Q1507P 0.07 benign(0.009) TCGA-BR-6706-01 2 163000597 163000597 A G GCG Missense_Mutation p.L159P 0.15 deleterious(0) probably_damaging(1) TCGA-BR-6706-01 2 166535430 166535430 G A CSRNP3 Missense_Mutation p.V309I 0.12 tolerated(0.18) benign(0.159) TCGA-BR-6706-01 2 168100111 168100111 G A XIRP2 Missense_Mutation p.E737K 0.08 probably_damaging(0.999) TCGA-BR-6706-01 2 179445318 179445318 A C TTN Missense_Mutation p.L22263R 0.13 TCGA-BR-6706-01 2 179452255 179452255 C T TTN Missense_Mutation p.V21261I 0.09 TCGA-BR-6706-01 2 179458569 179458569 T C TTN Silent p.P19486P 0.11 TCGA-BR-6706-01 2 179469665 179469665 T G TTN Intron 0.12 TCGA-BR-6706-01 2 198950584 198950584 T C PLCL1 Silent p.T781T 0.13 TCGA-BR-6706-01 2 213878645 213878645 T C IKZF2 Silent p.E242E 0.12 TCGA-BR-6706-01 3 100595361 100595361 T C ABI3BP Missense_Mutation p.K254R 0.07 tolerated(0.09) benign(0.292) TCGA-BR-6706-01 3 142048335 142048335 G A XRN1 Nonsense_Mutation p.R1448* 0.15 TCGA-BR-6706-01 3 145803056 145803056 A G PLOD2 Missense_Mutation p.F378L 0.06 tolerated(0.88) benign(0) TCGA-BR-6706-01 3 151012123 151012123 G A GPR87 Missense_Mutation p.A304V 0.15 deleterious(0) probably_damaging(0.999) TCGA-BR-6706-01 3 153847381 153847381 A G ARHGEF26 Missense_Mutation p.Q381R 0.18 deleterious(0.01) possibly_damaging(0.809) TCGA-BR-6706-01 3 157160806 157160806 T G PTX3 3'UTR 0.09 TCGA-BR-6706-01 3 178928079 178928079 G A PIK3CA Missense_Mutation p.E453K 0.12 tolerated(0.06) possibly_damaging(0.801) TCGA-BR-6706-01 3 180372680 180372680 T C CCDC39 Missense_Mutation p.K267R 0.11 tolerated(0.19) benign(0.02) TCGA-BR-6706-01 3 180377341 180377341 A C CCDC39 Missense_Mutation p.F213V 0.11 tolerated(0.11) possibly_damaging(0.623) TCGA-BR-6706-01 3 185798929 185798929 G A ETV5 Missense_Mutation p.R90W 0.18 deleterious(0) probably_damaging(1) TCGA-BR-6706-01 3 195938172 195938172 C T ZDHHC19 Silent p.T5T 0.06 TCGA-BR-6706-01 3 27759036 27759036 T G EOMES Missense_Mutation p.N529T 0.03 tolerated(0.07) benign(0.177) TCGA-BR-6706-01 3 49850964 49850964 C T UBA7 Missense_Mutation p.S58N 0.05 deleterious(0.01) benign(0.159) TCGA-BR-6706-01 3 50416351 50416351 T A CACNA2D2 Missense_Mutation p.N445I 0.14 deleterious(0) probably_damaging(0.973) TCGA-BR-6706-01 3 54958865 54958865 A C LRTM1 Missense_Mutation p.L129V 0.06 tolerated(0.08) possibly_damaging(0.463) TCGA-BR-6706-01 3 56183149 56183149 G T ERC2 Silent p.I387I 0.11 TCGA-BR-6706-01 3 88040704 88040704 A C HTR1F Silent p.R269R 0.10 TCGA-BR-6706-01 4 101109157 101109157 T C DDIT4L Missense_Mutation p.R87G 0.09 deleterious(0.01) possibly_damaging(0.877) TCGA-BR-6706-01 4 114278657 114278657 T C ANK2 Silent p.S2961S 0.11 TCGA-BR-6706-01 4 115997948 115997948 A T NDST4 Missense_Mutation p.L82H 0.10 deleterious(0) possibly_damaging(0.89) TCGA-BR-6706-01 4 126371322 126371322 T G FAT4 Missense_Mutation p.L3051V 0.11 benign(0.006) TCGA-BR-6706-01 4 151023936 151023936 A G DCLK2 Missense_Mutation p.K243R 0.07 tolerated(0.91) benign(0.065) TCGA-BR-6706-01 4 155720526 155720526 A C RBM46 Missense_Mutation p.K404N 0.05 deleterious(0) possibly_damaging(0.88) TCGA-BR-6706-01 4 156634503 156634503 A C GUCY1A3 Missense_Mutation p.K447T 0.11 deleterious(0) probably_damaging(0.999) TCGA-BR-6706-01 4 156831278 156831278 G T TDO2 Missense_Mutation p.R178I 0.10 tolerated(0.08) possibly_damaging(0.595) TCGA-BR-6706-01 4 159790449 159790449 T C FNIP2 Silent p.I887I 0.13 TCGA-BR-6706-01 4 185593358 185593358 T G PRIMPOL Silent p.A196A 0.09 TCGA-BR-6706-01 4 186379713 186379713 A G CCDC110 Silent p.F676F 0.08 TCGA-BR-6706-01 4 22820403 22820403 T G GBA3 Missense_Mutation p.F423V 0.15 deleterious(0) probably_damaging(1) TCGA-BR-6706-01 4 23814390 23814390 T C PPARGC1A Missense_Mutation p.R667G 0.06 deleterious(0) unknown(0) TCGA-BR-6706-01 4 5620291 5620291 G A EVC2 Nonsense_Mutation p.R874* 0.10 TCGA-BR-6706-01 4 9784832 9784832 C T DRD5 Silent p.L393L 0.09 TCGA-BR-6706-01 5 102295728 102295728 A G PAM Missense_Mutation p.K352R 0.09 tolerated(0.15) benign(0.093) TCGA-BR-6706-01 5 127855063 127855063 T G FBN2 Splice_Site p.X178_splice 0.06 TCGA-BR-6706-01 5 137222974 137222974 T A MYOT Missense_Mutation p.L466H 0.13 deleterious(0) probably_damaging(0.969) TCGA-BR-6706-01 5 140347619 140347619 T G PCDHAC2 Missense_Mutation p.V423G 0.09 deleterious(0) possibly_damaging(0.821) TCGA-BR-6706-01 5 141019448 141019448 A T FCHSD1 3'UTR 0.08 TCGA-BR-6706-01 5 148389903 148389903 A G SH3TC2 Missense_Mutation p.L1086P 0.08 deleterious(0) probably_damaging(0.996) TCGA-BR-6706-01 5 150908754 150908754 A G FAT2 Silent p.G3337G 0.12 TCGA-BR-6706-01 5 158743698 158743698 T A IL12B Missense_Mutation p.S328C 0.16 deleterious_low_confidence(0) benign(0.376) TCGA-BR-6706-01 5 167824784 167824784 A C WWC1 Missense_Mutation p.E163D 0.07 tolerated(0.05) possibly_damaging(0.569) TCGA-BR-6706-01 5 32400164 32400164 A G ZFR Missense_Mutation p.L554P 0.11 tolerated(0.29) unknown(0) TCGA-BR-6706-01 5 33982444 33982444 A C SLC45A2 Missense_Mutation p.D153E 0.13 deleterious(0) probably_damaging(0.999) TCGA-BR-6706-01 5 35991320 35991320 A C UGT3A1 Missense_Mutation p.L8R 0.08 deleterious(0.02) probably_damaging(0.999) TCGA-BR-6706-01 5 42718874 42718874 A G GHR Missense_Mutation p.D422G 0.16 tolerated(0.08) possibly_damaging(0.534) TCGA-BR-6706-01 5 55088488 55088488 A C DDX4 Missense_Mutation p.K441T 0.08 deleterious(0) possibly_damaging(0.81) TCGA-BR-6706-01 5 88119701 88119701 T G MEF2C 5'UTR 0.13 TCGA-BR-6706-01 5 89990213 89990213 T G GPR98 Missense_Mutation p.L2547R 0.08 probably_damaging(0.979) TCGA-BR-6706-01 6 109767884 109767900 GCCTTCAGTCTTTACCG - MICAL1 Splice_Site p.X768_splice 0.08 TCGA-BR-6706-01 6 112471810 112471810 A G LAMA4 Silent p.A692A 0.07 TCGA-BR-6706-01 6 121576500 121576500 A G TBC1D32 Silent p.S664S 0.09 TCGA-BR-6706-01 6 122779730 122779730 A G SERINC1 Silent p.L46L 0.08 TCGA-BR-6706-01 6 1313596 1313596 C T FOXQ1 Silent p.R219R 0.27 TCGA-BR-6706-01 6 146254276 146254276 T G SHPRH Missense_Mutation p.K1010T 0.10 deleterious(0) probably_damaging(0.953) TCGA-BR-6706-01 6 33703132 33703132 T C IP6K3 Missense_Mutation p.K41R 0.13 deleterious(0) possibly_damaging(0.882) TCGA-BR-6706-01 6 42612227 42612227 A C UBR2 Missense_Mutation p.N746T 0.10 tolerated(0.41) benign(0.001) TCGA-BR-6706-01 6 83845580 83845580 A C DOPEY1 Missense_Mutation p.N1038T 0.12 tolerated(0.17) benign(0.001) TCGA-BR-6706-01 7 100675453 100675453 A C MUC17 Missense_Mutation p.Q252H 0.04 benign(0.02) TCGA-BR-6706-01 7 100686766 100686766 T G MUC17 Silent p.T4023T 0.07 TCGA-BR-6706-01 7 11581104 11581104 G A THSD7A Silent p.N588N 0.12 TCGA-BR-6706-01 7 117432071 117432071 A G CTTNBP2 Silent p.D393D 0.18 TCGA-BR-6706-01 7 120446622 120446622 A G TSPAN12 Missense_Mutation p.L198P 0.08 deleterious(0) probably_damaging(0.998) TCGA-BR-6706-01 7 123119949 123119949 A G IQUB Missense_Mutation p.L437P 0.13 deleterious(0) probably_damaging(0.994) TCGA-BR-6706-01 7 147914383 147914383 T G CNTNAP2 Missense_Mutation p.V1005G 0.04 deleterious(0) probably_damaging(0.961) TCGA-BR-6706-01 7 16900136 16900136 C T AGR3 Missense_Mutation p.D147N 0.10 tolerated(0.14) probably_damaging(0.992) TCGA-BR-6706-01 7 32909212 32909212 T C KBTBD2 Silent p.R539R 0.23 TCGA-BR-6706-01 7 33014900 33014900 T G FKBP9 Missense_Mutation p.S158R 0.19 tolerated(0.54) benign(0.001) TCGA-BR-6706-01 7 94041406 94041406 C T COL1A2 Silent p.I459I 0.15 TCGA-BR-6706-01 7 96639182 96639182 C T DLX6 Silent p.S235S 0.09 TCGA-BR-6706-01 7 99077375 99077375 T C ZNF789 Missense_Mutation p.V39A 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-BR-6706-01 8 106813442 106813442 T G ZFPM2 Missense_Mutation p.L378V 0.09 tolerated(0.08) possibly_damaging(0.804) TCGA-BR-6706-01 8 11421550 11421550 A G BLK Missense_Mutation p.E484G 0.19 deleterious(0) possibly_damaging(0.847) TCGA-BR-6706-01 8 11851601 11851601 T C DEFB134 Missense_Mutation p.K30R 0.06 tolerated_low_confidence(0.53) possibly_damaging(0.636) TCGA-BR-6706-01 8 125082784 125082784 A G FER1L6 Missense_Mutation p.K1304R 0.11 deleterious(0.04) probably_damaging(0.999) TCGA-BR-6706-01 8 130761760 130761760 A C GSDMC Missense_Mutation p.F409V 0.13 tolerated(0.35) benign(0.002) TCGA-BR-6706-01 8 133899716 133899716 A G TG Missense_Mutation p.N700S 0.12 deleterious(0.02) benign(0.016) TCGA-BR-6706-01 8 17504590 17504590 T G MTUS1 Splice_Site p.X1168_splice 0.08 TCGA-BR-6706-01 8 27762222 27762222 T C SCARA5 Intron 0.08 TCGA-BR-6706-01 8 48883436 48883436 G A MCM4 Silent p.K600K 0.13 TCGA-BR-6706-01 8 68942747 68942747 A G PREX2 Missense_Mutation p.T187A 0.07 deleterious(0) probably_damaging(0.992) TCGA-BR-6706-01 8 77764117 77764117 A G ZFHX4 Missense_Mutation p.S1654G 0.06 benign(0.294) TCGA-BR-6706-01 9 100616468 100616468 G A FOXE1 Missense_Mutation p.R91H 0.09 tolerated(0.05) possibly_damaging(0.486) TCGA-BR-6706-01 9 104075105 104075105 C T LPPR1 Missense_Mutation p.T221M 0.10 deleterious(0.03) probably_damaging(0.98) TCGA-BR-6706-01 9 109736459 109736459 T C ZNF462 Missense_Mutation p.V2246A 0.11 benign(0.01) TCGA-BR-6706-01 9 114090461 114090461 A C OR2K2 Missense_Mutation p.L85V 0.07 deleterious(0.04) benign(0.008) TCGA-BR-6706-01 9 120475898 120475898 T G TLR4 Missense_Mutation p.L498V 0.09 deleterious(0) probably_damaging(0.999) TCGA-BR-6706-01 9 125936031 125936031 C T STRBP Silent p.L105L 0.05 TCGA-BR-6706-01 9 2123719 2123719 C T SMARCA2 Missense_Mutation p.R1255W 0.09 possibly_damaging(0.689) TCGA-BR-6706-01 9 36357894 36357894 C T RNF38 Missense_Mutation p.A206T 0.07 tolerated(0.77) benign(0.011) TCGA-BR-6706-01 9 73150804 73150804 A C TRPM3 3'UTR 0.09 TCGA-BR-6706-01 9 73240173 73240173 A C TRPM3 Silent p.A569A 0.11 TCGA-BR-6706-01 X 10047829 10047829 T C WWC3 Missense_Mutation p.V121A 0.31 deleterious(0.01) probably_damaging(0.986) TCGA-BR-6706-01 X 111022219 111022219 A C TRPC5 Missense_Mutation p.N742K 0.32 deleterious(0) possibly_damaging(0.573) TCGA-BR-6706-01 X 132160633 132160633 A C USP26 Missense_Mutation p.V539G 0.06 deleterious(0) probably_damaging(0.998) TCGA-BR-6706-01 X 135825841 135825841 G A ARHGEF6 Silent p.Y188Y 0.14 TCGA-BR-6706-01 X 153176006 153176006 C T ARHGAP4 Missense_Mutation p.A666T 0.23 tolerated(0.35) benign(0.164) TCGA-BR-6706-01 X 17080602 17080602 T C REPS2 Missense_Mutation p.Y386H 0.34 tolerated(0.11) benign(0.052) TCGA-BR-6706-01 X 43662581 43662581 T G MAOB Missense_Mutation p.N117T 0.29 deleterious(0) probably_damaging(0.95) TCGA-BR-6706-01 X 47918755 47918755 T G ZNF630 Missense_Mutation p.K359T 0.33 tolerated(0.08) probably_damaging(0.997) TCGA-BR-6706-01 X 63412453 63412453 T C AMER1 Silent p.K238K 0.03 TCGA-BR-6706-01 X 73961294 73961294 T G KIAA2022 Missense_Mutation p.K1033T 0.05 deleterious(0.02) probably_damaging(0.999) TCGA-BR-6706-01 X 77387203 77387205 AAG - TAF9B In_Frame_Del p.L220del 0.15 TCGA-BR-6707-01 10 105202030 105202030 C T PDCD11 Missense_Mutation p.R1590C 0.43 deleterious(0.02) probably_damaging(0.943) TCGA-BR-6707-01 10 5498109 5498109 C T NET1 Silent p.N419N 0.18 TCGA-BR-6707-01 10 89692905 89692905 G A PTEN Missense_Mutation p.R130Q 0.26 deleterious(0.02) probably_damaging(0.989) TCGA-BR-6707-01 11 26619976 26619976 C T ANO3 Silent p.I504I 0.31 TCGA-BR-6707-01 11 45892066 45892066 C T CRY2 Missense_Mutation p.S532L 0.15 deleterious(0.04) benign(0.116) TCGA-BR-6707-01 11 9167339 9167339 C T DENND5A Missense_Mutation p.V961I 0.18 tolerated(1) benign(0.01) TCGA-BR-6707-01 12 10954759 10954759 G A TAS2R7 Silent p.C137C 0.28 TCGA-BR-6707-01 12 21068976 21068976 C A SLCO1B3 Missense_Mutation p.P635Q 0.22 tolerated(0.17) benign(0.238) TCGA-BR-6707-01 12 54106589 54106589 G T CALCOCO1 Intron 0.08 TCGA-BR-6707-01 12 56824049 56824049 G A TIMELESS Missense_Mutation p.S309L 0.23 tolerated(0.28) benign(0.004) TCGA-BR-6707-01 12 86199380 86199380 G A RASSF9 Silent p.N136N 0.25 TCGA-BR-6707-01 13 33109952 33109952 T A N4BP2L2 Intron 0.08 TCGA-BR-6707-01 13 33591098 33591098 C T KL Missense_Mutation p.R174W 0.30 deleterious(0.01) probably_damaging(0.973) TCGA-BR-6707-01 14 22294110 22294110 A T TRAV10 Missense_Mutation p.T72S 0.33 tolerated(0.38) benign(0.006) TCGA-BR-6707-01 14 27066654 27066654 C T NOVA1 5'UTR 0.29 TCGA-BR-6707-01 15 39877765 39877765 G A THBS1 Splice_Site p.X374_splice 0.33 TCGA-BR-6707-01 15 74487556 74487556 T C STRA6 Intron 0.57 TCGA-BR-6707-01 15 83346895 83346895 T C AP3B2 Missense_Mutation p.N403D 0.18 deleterious(0.02) benign(0.105) TCGA-BR-6707-01 16 81916924 81916924 G A PLCG2 Missense_Mutation p.R248K 0.42 tolerated(0.75) probably_damaging(0.984) TCGA-BR-6707-01 17 10424715 10424715 C T MYH2 Missense_Mutation p.R1903H 0.26 deleterious(0.01) benign(0.258) TCGA-BR-6707-01 17 26731940 26731940 C T SLC46A1 Missense_Mutation p.A259T 0.20 tolerated(0.32) possibly_damaging(0.557) TCGA-BR-6707-01 17 57076674 57076674 A G TRIM37 3'UTR 0.05 TCGA-BR-6707-01 17 72256415 72256415 G A TTYH2 3'UTR 0.21 TCGA-BR-6707-01 18 11752351 11752351 G A GNAL Intron 0.14 TCGA-BR-6707-01 18 70532826 70532826 C G NETO1 Intron 0.24 TCGA-BR-6707-01 19 37904164 37904164 A G ZNF569 Missense_Mutation p.Y466H 0.25 deleterious(0.03) probably_damaging(0.999) TCGA-BR-6707-01 19 38794861 38794861 C T C19orf33 5'UTR 0.42 TCGA-BR-6707-01 19 43519445 43519445 C T PSG11 Missense_Mutation p.A263T 0.09 tolerated(0.41) benign(0.021) TCGA-BR-6707-01 19 44791904 44791904 G A ZNF235 Nonsense_Mutation p.Q562* 0.18 TCGA-BR-6707-01 1 109870142 109870142 C T SORT1 Missense_Mutation p.V485I 0.15 tolerated(0.21) benign(0.072) TCGA-BR-6707-01 1 12907938 12907938 C T HNRNPCL1 Missense_Mutation p.G69R 0.14 deleterious(0.02) benign(0.275) TCGA-BR-6707-01 1 179077710 179077710 G A ABL2 Nonsense_Mutation p.R898* 0.15 TCGA-BR-6707-01 1 180241097 180241097 C T LHX4 Missense_Mutation p.S245F 0.29 tolerated(0.07) benign(0.352) TCGA-BR-6707-01 1 183891428 183891428 G A RGL1 Missense_Mutation p.A728T 0.19 tolerated(0.3) benign(0.282) TCGA-BR-6707-01 1 214171517 214171517 G A PROX1 Missense_Mutation p.A547T 0.25 tolerated(0.49) benign(0.003) TCGA-BR-6707-01 1 215802319 215802319 C T USH2A Missense_Mutation p.R5119Q 0.27 benign(0.004) TCGA-BR-6707-01 1 228404826 228404826 G C OBSCN Missense_Mutation p.W830C 0.23 probably_damaging(0.993) TCGA-BR-6707-01 1 248551682 248551682 C T OR2T6 Missense_Mutation p.T258M 0.22 deleterious(0.03) possibly_damaging(0.647) TCGA-BR-6707-01 1 27101593 27101593 A - ARID1A Frame_Shift_Del p.I1625Mfs*10 0.33 TCGA-BR-6707-01 1 39878876 39878876 C T KIAA0754 Missense_Mutation p.T844I 0.10 benign(0.413) TCGA-BR-6707-01 1 76282161 76282161 G T MSH4 Nonsense_Mutation p.E307* 0.27 TCGA-BR-6707-01 20 51872642 51872642 G A TSHZ2 Missense_Mutation p.R882H 0.18 deleterious(0) probably_damaging(0.998) TCGA-BR-6707-01 20 644940 644940 G A SCRT2 Missense_Mutation p.A100V 0.28 deleterious(0.03) benign(0.442) TCGA-BR-6707-01 22 22892267 22892267 C T PRAME Silent p.P278P 0.22 TCGA-BR-6707-01 2 141283858 141283858 T C LRP1B Silent p.A2608A 0.24 TCGA-BR-6707-01 2 162821597 162821599 TTG - SLC4A10 In_Frame_Del p.L1026del 0.26 TCGA-BR-6707-01 2 211512631 211512631 C A CPS1 Missense_Mutation p.N1068K 0.20 deleterious(0) probably_damaging(0.929) TCGA-BR-6707-01 2 220032699 220032699 T A SLC23A3 Missense_Mutation p.E297V 0.24 deleterious(0.01) benign(0.3) TCGA-BR-6707-01 2 241710462 241710462 C T KIF1A Missense_Mutation p.A423T 0.25 tolerated(0.16) benign(0.036) TCGA-BR-6707-01 2 37873831 37873831 C A CDC42EP3 5'UTR 0.25 TCGA-BR-6707-01 2 55523480 55523480 G A CCDC88A Missense_Mutation p.H1668Y 0.20 tolerated(0.92) benign(0.076) TCGA-BR-6707-01 2 70443986 70443986 C T TIA1 Intron 0.21 TCGA-BR-6707-01 2 90212251 90212251 C A IGKV3D-11 Missense_Mutation p.H115N 0.14 deleterious_low_confidence(0.05) benign(0) TCGA-BR-6707-01 3 10401792 10401792 C A ATP2B2 Missense_Mutation p.G559C 0.23 deleterious(0) probably_damaging(1) TCGA-BR-6707-01 3 134851683 134851683 C T EPHB1 Silent p.C363C 0.25 TCGA-BR-6707-01 3 1424860 1424860 G A CNTN6 Missense_Mutation p.E801K 0.18 deleterious(0) possibly_damaging(0.844) TCGA-BR-6707-01 3 164905876 164905876 C T SLITRK3 Missense_Mutation p.V915M 0.07 deleterious(0.05) benign(0.004) TCGA-BR-6707-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.45 deleterious(0.02) probably_damaging(0.959) TCGA-BR-6707-01 3 47164272 47164272 T C SETD2 Silent p.S618S 0.13 TCGA-BR-6707-01 4 107847019 107847019 G A DKK2 Missense_Mutation p.R104W 0.28 deleterious(0) probably_damaging(0.998) TCGA-BR-6707-01 4 128628065 128628065 C T INTU Missense_Mutation p.R738W 0.24 tolerated(0.05) benign(0.031) TCGA-BR-6707-01 4 71698070 71698070 T A GRSF1 Silent p.G256G 0.26 TCGA-BR-6707-01 4 79229315 79229315 G T FRAS1 Nonsense_Mutation p.E544* 0.11 TCGA-BR-6707-01 5 140256419 140256419 G A PCDHA12 Silent p.A454A 0.19 TCGA-BR-6707-01 5 140553577 140553577 C T PCDHB7 Silent p.D387D 0.21 TCGA-BR-6707-01 5 141699344 141699344 G A SPRY4 5'UTR 0.14 TCGA-BR-6707-01 5 154172296 154172296 G T LARP1 Nonsense_Mutation p.E150* 0.10 TCGA-BR-6707-01 5 176517537 176517537 C T FGFR4 Missense_Mutation p.R80W 0.15 tolerated(0.14) probably_damaging(0.918) TCGA-BR-6707-01 5 23521145 23521145 C A PRDM9 Missense_Mutation p.A122E 0.25 tolerated_low_confidence(0.15) benign(0.022) TCGA-BR-6707-01 5 71495207 71495207 G T MAP1B Nonsense_Mutation p.E2009* 0.22 TCGA-BR-6707-01 5 78981136 78981136 G A PAPD4 3'UTR 0.14 TCGA-BR-6707-01 5 89943437 89943437 G T GPR98 Nonsense_Mutation p.E1049* 0.04 TCGA-BR-6707-01 6 125366470 125366470 C G RNF217 Nonsense_Mutation p.Y40* 0.05 TCGA-BR-6707-01 6 160557340 160557340 G A SLC22A1 Missense_Mutation p.G310R 0.20 tolerated(0.15) benign(0.248) TCGA-BR-6707-01 6 31779555 31779555 G A HSPA1L Silent p.P65P 0.16 TCGA-BR-6707-01 7 107677848 107677848 T C LAMB4 Missense_Mutation p.K1555R 0.23 tolerated(0.13) benign(0.035) TCGA-BR-6707-01 7 128494220 128494220 T C FLNC Missense_Mutation p.L2226P 0.24 tolerated(0.34) benign(0.001) TCGA-BR-6707-01 7 2954991 2954991 C T CARD11 Missense_Mutation p.E907K 0.27 tolerated(0.19) benign(0.194) TCGA-BR-6707-01 7 43477748 43477748 A T HECW1 Intron 0.20 TCGA-BR-6707-01 7 55914311 55914311 C T SEPT14 Missense_Mutation p.R25H 0.27 deleterious(0) possibly_damaging(0.875) TCGA-BR-6707-01 7 6449475 6449475 A G DAGLB Missense_Mutation p.V671A 0.27 deleterious_low_confidence(0.02) benign(0.033) TCGA-BR-6707-01 8 105105703 105105703 G A RIMS2 Intron 0.15 TCGA-BR-6707-01 8 23291882 23291882 C T ENTPD4 Missense_Mutation p.V524I 0.13 deleterious(0.04) benign(0.252) TCGA-BR-6707-01 8 27156046 27156046 G A TRIM35 Missense_Mutation p.R156W 0.35 deleterious(0) possibly_damaging(0.77) TCGA-BR-6707-01 8 51664620 51664620 C A SNTG1 Missense_Mutation p.S448R 0.22 deleterious(0) benign(0.306) TCGA-BR-6707-01 9 113563100 113563100 C T MUSK Silent p.Y814Y 0.21 TCGA-BR-6707-01 9 131024860 131024860 C T GOLGA2 Silent p.T345T 0.04 TCGA-BR-6707-01 9 94485837 94485837 C T ROR2 3'UTR 0.18 TCGA-BR-6707-01 X 10058913 10058913 C T WWC3 Silent p.G160G 0.07 TCGA-BR-6707-01 X 39923059 39923059 G A BCOR Nonsense_Mutation p.R1217* 0.56 TCGA-BR-6707-01 X 54836552 54836552 C G MAGED2 Missense_Mutation p.A148G 0.50 tolerated_low_confidence(0.14) benign(0.004) TCGA-BR-6707-01 X 5821174 5821174 G A NLGN4X Silent p.N515N 0.48 TCGA-BR-6709-01 11 48285907 48285907 G T OR4X1 Silent p.P165P 0.15 TCGA-BR-6709-01 11 65648922 65648922 G A CTSW Missense_Mutation p.A73T 0.54 deleterious(0) probably_damaging(1) TCGA-BR-6709-01 11 65649650 65649650 G A CTSW Silent p.E97E 0.44 TCGA-BR-6709-01 11 65649723 65649723 G A CTSW Missense_Mutation p.E122K 0.41 tolerated(0.12) benign(0.032) TCGA-BR-6709-01 11 85988118 85988118 C T EED Nonsense_Mutation p.R355* 0.06 TCGA-BR-6709-01 12 1902853 1902853 C T CACNA2D4 Missense_Mutation p.A1128T 0.04 tolerated(0.43) benign(0.004) TCGA-BR-6709-01 12 23687406 23687406 G C SOX5 Missense_Mutation p.A680G 0.03 deleterious(0.02) possibly_damaging(0.683) TCGA-BR-6709-01 12 2566826 2566826 G A CACNA1C Silent p.R237R 0.07 TCGA-BR-6709-01 12 29608198 29608198 G T OVCH1 Silent p.I807I 0.03 TCGA-BR-6709-01 12 30881672 30881672 C G CAPRIN2 Missense_Mutation p.Q564H 0.03 deleterious(0.03) benign(0.067) TCGA-BR-6709-01 12 33535294 33535294 C T SYT10 Missense_Mutation p.D454N 0.08 deleterious(0) probably_damaging(0.998) TCGA-BR-6709-01 12 49315051 49315051 A G CCDC65 Missense_Mutation p.D427G 0.15 tolerated(0.19) benign(0.003) TCGA-BR-6709-01 13 36445384 36445384 T C DCLK1 Missense_Mutation p.K306R 0.22 tolerated(0.27) possibly_damaging(0.486) TCGA-BR-6709-01 14 104206688 104206688 C T PPP1R13B Missense_Mutation p.A689T 0.04 deleterious(0.01) benign(0.077) TCGA-BR-6709-01 14 39818102 39818102 T C CTAGE5 Silent p.P728P 0.21 TCGA-BR-6709-01 14 65054868 65054868 C T PPP1R36 Missense_Mutation p.R313C 0.26 tolerated(0.1) possibly_damaging(0.678) TCGA-BR-6709-01 14 94718194 94718194 C T PPP4R4 Missense_Mutation p.P609L 0.05 tolerated(0.28) benign(0.228) TCGA-BR-6709-01 15 100514743 100514743 C T ADAMTS17 Missense_Mutation p.R1051Q 0.12 tolerated(0.38) probably_damaging(0.92) TCGA-BR-6709-01 15 54586215 54586215 T A UNC13C Missense_Mutation p.V1314E 0.06 deleterious_low_confidence(0) possibly_damaging(0.719) TCGA-BR-6709-01 17 2576045 2576045 A G PAFAH1B1 Missense_Mutation p.Q222R 0.26 deleterious(0.02) benign(0.017) TCGA-BR-6709-01 18 50731695 50731695 C G DCC Nonsense_Mutation p.Y561* 0.18 TCGA-BR-6709-01 18 65179389 65179389 C T DSEL Silent p.V829V 0.05 TCGA-BR-6709-01 19 11218068 11218068 T G LDLR Missense_Mutation p.V273G 0.07 tolerated(0.07) possibly_damaging(0.501) TCGA-BR-6709-01 19 9453328 9453328 C T ZNF559 Nonsense_Mutation p.Q401* 0.09 TCGA-BR-6709-01 1 118039415 118039416 - GT MAN1A2 Frame_Shift_Ins p.G440Vfs*32 0.16 TCGA-BR-6709-01 1 184677466 184677466 T C EDEM3 Missense_Mutation p.I620V 0.09 tolerated(0.31) benign(0) TCGA-BR-6709-01 1 186024533 186024533 A C HMCN1 Missense_Mutation p.T2291P 0.21 possibly_damaging(0.513) TCGA-BR-6709-01 1 22166044 22166044 C T HSPG2 Splice_Site p.X3237_splice 0.09 TCGA-BR-6709-01 1 44087753 44087753 C T PTPRF 3'UTR 0.12 TCGA-BR-6709-01 1 45293195 45293195 G A PTCH2 Silent p.A750A 0.20 TCGA-BR-6709-01 1 54395805 54395805 A C HSPB11 Missense_Mutation p.F38V 0.23 deleterious(0) probably_damaging(1) TCGA-BR-6709-01 1 75038941 75038941 T C C1orf173 Missense_Mutation p.Q818R 0.13 tolerated(0.22) benign(0.262) TCGA-BR-6709-01 2 179463648 179463648 C G TTN Missense_Mutation p.R18930T 0.17 TCGA-BR-6709-01 2 26950984 26950984 C T KCNK3 Missense_Mutation p.R245C 0.20 deleterious(0) probably_damaging(0.995) TCGA-BR-6709-01 3 119207810 119207810 A G POGLUT1 Missense_Mutation p.H258R 0.21 tolerated(0.74) benign(0.006) TCGA-BR-6709-01 3 167016191 167016191 A C ZBBX Missense_Mutation p.L594R 0.14 deleterious(0) probably_damaging(0.937) TCGA-BR-6709-01 3 45637696 45637696 C T LIMD1 Missense_Mutation p.P442L 0.10 tolerated(0.06) benign(0.025) TCGA-BR-6709-01 3 50294236 50294236 C T GNAI2 Silent p.C225C 0.06 TCGA-BR-6709-01 4 155158023 155158023 G A DCHS2 Missense_Mutation p.S2139L 0.09 tolerated(0.32) benign(0.006) TCGA-BR-6709-01 4 68687943 68687943 A C TMPRSS11D 3'UTR 0.16 TCGA-BR-6709-01 5 133502891 133502891 T C SKP1 Silent p.L47L 0.19 TCGA-BR-6709-01 6 143091386 143091386 C A HIVEP2 Missense_Mutation p.R1497L 0.13 deleterious(0.02) probably_damaging(0.998) TCGA-BR-6709-01 6 27791916 27791916 G A HIST1H4J Missense_Mutation p.G5D 0.14 deleterious_low_confidence(0.04) unknown(0) TCGA-BR-6709-01 6 35280239 35280239 G A DEF6 Missense_Mutation p.R195Q 0.16 tolerated(0.06) possibly_damaging(0.719) TCGA-BR-6709-01 7 149489038 149489038 G A SSPO RNA 0.15 TCGA-BR-6709-01 7 38791832 38791832 C T VPS41 Missense_Mutation p.D624N 0.13 tolerated(0.34) benign(0.367) TCGA-BR-6709-01 7 70228050 70228050 C G AUTS2 Missense_Mutation p.P313A 0.09 tolerated(0.26) benign(0.015) TCGA-BR-6709-01 7 75609838 75609838 G T POR Intron 0.12 TCGA-BR-6709-01 7 93065271 93065271 T C CALCR Missense_Mutation p.H415R 0.18 deleterious(0) possibly_damaging(0.736) TCGA-BR-6709-01 8 113420594 113420594 G T CSMD3 Missense_Mutation p.T1853N 0.11 tolerated(0.11) probably_damaging(0.978) TCGA-BR-6709-01 8 67929951 67929951 C A PPP1R42 Missense_Mutation p.R11I 0.06 deleterious(0) possibly_damaging(0.495) TCGA-BR-6709-01 9 35853171 35853171 A G TMEM8B Missense_Mutation p.M334V 0.08 deleterious(0.05) probably_damaging(0.977) TCGA-BR-6709-01 X 10094279 10094279 C T WWC3 Missense_Mutation p.A680V 0.17 tolerated(0.38) benign(0.005) TCGA-BR-6709-01 X 70465871 70465871 G C ZMYM3 Missense_Mutation p.Q884E 0.12 deleterious(0) probably_damaging(0.93) TCGA-BR-6801-01 11 100999115 100999115 G A PGR Silent p.S229S 0.78 TCGA-BR-6801-01 11 1016198 1016200 AGA - MUC6 In_Frame_Del p.S2201del 0.54 TCGA-BR-6801-01 12 54367430 54367430 C T HOXC11 Silent p.A135A 0.55 TCGA-BR-6801-01 14 23587828 23587828 G A CEBPE Missense_Mutation p.T158I 0.72 deleterious(0.01) benign(0.002) TCGA-BR-6801-01 14 29237757 29237757 G A FOXG1 Silent p.P424P 0.53 TCGA-BR-6801-01 14 72055091 72055091 C T SIPA1L1 Missense_Mutation p.R168C 0.58 deleterious(0.03) probably_damaging(0.988) TCGA-BR-6801-01 15 45433241 45433241 G A DUOX1 Missense_Mutation p.R513H 0.51 deleterious(0) probably_damaging(0.999) TCGA-BR-6801-01 15 50189583 50189583 C T ATP8B4 Missense_Mutation p.R868Q 0.57 deleterious(0) probably_damaging(0.996) TCGA-BR-6801-01 15 62237921 62237921 G A VPS13C Missense_Mutation p.S1714F 0.49 deleterious(0) probably_damaging(0.966) TCGA-BR-6801-01 15 65621886 65621886 G A IGDCC3 Missense_Mutation p.P683S 0.07 tolerated_low_confidence(0.05) benign(0.146) TCGA-BR-6801-01 15 74425927 74425927 G A ISLR2 Missense_Mutation p.G278S 0.58 tolerated(0.4) probably_damaging(1) TCGA-BR-6801-01 16 47005450 47005450 G C DNAJA2 Nonsense_Mutation p.S58* 0.07 TCGA-BR-6801-01 16 89611154 89611154 G A SPG7 Missense_Mutation p.V475I 0.62 tolerated(1) benign(0.02) TCGA-BR-6801-01 17 15539380 15539380 C T TRIM16 Silent p.A273A 0.56 TCGA-BR-6801-01 17 18631041 18631041 G A TRIM16L Silent p.A57A 0.11 TCGA-BR-6801-01 17 36353666 36353666 A G RP11-1407O15.2 Missense_Mutation p.F399L 0.28 TCGA-BR-6801-01 17 45668182 45668182 T C NPEPPS Missense_Mutation p.F399L 0.15 deleterious(0) probably_damaging(0.986) TCGA-BR-6801-01 17 4576196 4576196 G A PELP1 Missense_Mutation p.S697L 0.49 benign(0.32) TCGA-BR-6801-01 17 76457765 76457765 G A DNAH17 Missense_Mutation p.A3053V 0.62 possibly_damaging(0.509) TCGA-BR-6801-01 18 6974963 6974963 G A LAMA1 Missense_Mutation p.R2188C 0.62 deleterious(0) probably_damaging(1) TCGA-BR-6801-01 19 1395321 1395321 G A NDUFS7 Intron 0.38 TCGA-BR-6801-01 19 14000238 14000238 C T C19orf57 Silent p.P477P 0.59 TCGA-BR-6801-01 19 55697282 55697282 A G PTPRH Missense_Mutation p.V950A 0.41 possibly_damaging(0.542) TCGA-BR-6801-01 19 56108964 56108964 C T FIZ1 Missense_Mutation p.D90N 0.16 deleterious(0.03) possibly_damaging(0.555) TCGA-BR-6801-01 19 57088681 57088681 A G ZNF470 Missense_Mutation p.Q295R 0.49 tolerated(0.22) probably_damaging(0.995) TCGA-BR-6801-01 1 1247219 1247219 G A CPSF3L 3'UTR 0.61 TCGA-BR-6801-01 1 156235937 156235937 G A SMG5 Missense_Mutation p.S497F 0.56 deleterious(0.01) probably_damaging(0.999) TCGA-BR-6801-01 1 158651377 158651377 G A SPTA1 Silent p.A157A 0.64 TCGA-BR-6801-01 1 228479801 228479801 C T OBSCN Silent p.D3943D 0.61 TCGA-BR-6801-01 1 23763702 23763702 C T ASAP3 Silent p.P421P 0.67 TCGA-BR-6801-01 1 40775783 40775783 C T COL9A2 Silent p.P264P 0.50 TCGA-BR-6801-01 20 43135528 43135528 G C SERINC3 Missense_Mutation p.I241M 0.29 deleterious(0) probably_damaging(0.99) TCGA-BR-6801-01 20 52645436 52645436 G T BCAS1 Missense_Mutation p.A73E 0.38 tolerated(0.05) benign(0.221) TCGA-BR-6801-01 20 57767259 57767259 C T ZNF831 Silent p.A395A 0.21 TCGA-BR-6801-01 20 61297964 61297964 C T SLCO4A1 Intron 0.32 TCGA-BR-6801-01 21 39580375 39580375 T A DSCR10 RNA 0.56 TCGA-BR-6801-01 22 38130723 38130723 G A TRIOBP Nonsense_Mutation p.W1460* 0.53 TCGA-BR-6801-01 22 42033616 42033616 C T XRCC6 Silent p.I198I 0.59 TCGA-BR-6801-01 22 42539422 42539422 G T NDUFA6-AS1 3'Flank 0.31 TCGA-BR-6801-01 2 141299517 141299517 C T LRP1B Silent p.G2406G 0.09 TCGA-BR-6801-01 2 152486101 152486101 G A NEB Silent p.D3261D 0.56 TCGA-BR-6801-01 2 157186116 157186116 C T NR4A2 Missense_Mutation p.D195N 0.58 tolerated(0.22) benign(0.133) TCGA-BR-6801-01 2 190532562 190532562 C T ASNSD1 Missense_Mutation p.H513Y 0.12 tolerated(1) benign(0.008) TCGA-BR-6801-01 2 74601558 74601558 C T DCTN1 Intron 0.67 TCGA-BR-6801-01 3 108273290 108273290 C T KIAA1524 Missense_Mutation p.D753N 0.18 tolerated(0.54) benign(0.007) TCGA-BR-6801-01 3 150127050 150127050 T G TSC22D2 5'UTR 0.36 TCGA-BR-6801-01 3 36869827 36869827 T A TRANK1 Missense_Mutation p.D2906V 0.63 deleterious(0) probably_damaging(0.994) TCGA-BR-6801-01 3 38739967 38739967 G A SCN10A Missense_Mutation p.R1582C 0.53 deleterious(0) probably_damaging(0.998) TCGA-BR-6801-01 4 100268233 100268236 AGGA - ADH1C Frame_Shift_Del p.P63* 0.56 TCGA-BR-6801-01 4 3251150 3251150 G C MSANTD1 Missense_Mutation p.Q67H 0.48 tolerated(0.09) probably_damaging(0.935) TCGA-BR-6801-01 4 94344116 94344119 TAAG AAA GRID2 Frame_Shift_Del p.F514Lfs*6 0.35 TCGA-BR-6801-01 5 7695884 7695884 G A ADCY2 Missense_Mutation p.V297I 0.43 deleterious(0) probably_damaging(0.986) TCGA-BR-6801-01 6 44392169 44392169 G A CDC5L Missense_Mutation p.R473Q 0.56 tolerated(0.08) benign(0.025) TCGA-BR-6801-01 7 103848384 103848384 G A ORC5 5'UTR 0.44 TCGA-BR-6801-01 7 148311189 148311189 C T C7orf33 Missense_Mutation p.S87L 0.11 deleterious_low_confidence(0) possibly_damaging(0.504) TCGA-BR-6801-01 7 55492979 55492979 C G LANCL2 Silent p.A347A 0.27 TCGA-BR-6801-01 7 91682266 91682266 C T AKAP9 Silent p.S1865S 0.41 TCGA-BR-6801-01 8 37691340 37691340 C T GPR124 Silent p.V477V 0.56 TCGA-BR-6801-01 8 90965531 90965531 C T NBN Missense_Mutation p.D596N 0.73 tolerated(0.07) possibly_damaging(0.544) TCGA-BR-6801-01 9 129594921 129594921 C T ZBTB43 Missense_Mutation p.R45W 0.62 deleterious(0) possibly_damaging(0.623) TCGA-BR-6801-01 9 35714789 35714789 C T TLN1 Missense_Mutation p.G947S 0.60 tolerated(0.67) benign(0.053) TCGA-BR-6801-01 9 40772474 40772474 C T ZNF658 Missense_Mutation p.G934E 0.56 deleterious(0) probably_damaging(1) TCGA-BR-6801-01 X 151909376 151909376 C T CSAG1 3'UTR 0.80 TCGA-BR-6801-01 X 153225353 153225353 C T HCFC1 Silent p.L448L 0.73 TCGA-BR-6802-01 10 101157174 101157174 C T GOT1 3'UTR 0.24 TCGA-BR-6802-01 10 101458568 101458568 C T ENTPD7 Missense_Mutation p.R430C 0.14 deleterious(0.01) possibly_damaging(0.679) TCGA-BR-6802-01 10 102762312 102762313 CT - LZTS2 Frame_Shift_Del p.L7Afs*9 0.14 TCGA-BR-6802-01 10 104264032 104264032 C T SUFU Silent p.C41C 0.13 TCGA-BR-6802-01 10 108338937 108338937 A G SORCS1 Silent p.S1148S 0.16 TCGA-BR-6802-01 10 115609826 115609826 T - DCLRE1A Frame_Shift_Del p.K346Nfs*7 0.15 TCGA-BR-6802-01 10 1170951 1170951 G A WDR37 Missense_Mutation p.R447Q 0.20 deleterious(0.02) possibly_damaging(0.885) TCGA-BR-6802-01 10 122625206 122625206 G A WDR11 Missense_Mutation p.R315H 0.11 deleterious(0) possibly_damaging(0.868) TCGA-BR-6802-01 10 124908090 124908090 T G HMX2 Missense_Mutation p.F66V 0.17 deleterious_low_confidence(0.02) benign(0.046) TCGA-BR-6802-01 10 124921806 124921806 A C BUB3 Missense_Mutation p.S211R 0.07 deleterious(0.02) benign(0.031) TCGA-BR-6802-01 10 128193320 128193320 G - C10orf90 Frame_Shift_Del p.P150Qfs*58 0.16 TCGA-BR-6802-01 10 15726071 15726071 G T ITGA8 Missense_Mutation p.P167Q 0.16 deleterious(0) probably_damaging(0.98) TCGA-BR-6802-01 10 16635285 16635285 A - RSU1 3'UTR 0.13 TCGA-BR-6802-01 10 16867001 16867001 G A CUBN Silent p.S3615S 0.11 TCGA-BR-6802-01 10 16911739 16911739 C T CUBN Missense_Mutation p.R3117H 0.09 deleterious(0.03) possibly_damaging(0.505) TCGA-BR-6802-01 10 23244766 23244766 T G ARMC3 Missense_Mutation p.L66R 0.12 deleterious(0) probably_damaging(0.926) TCGA-BR-6802-01 10 28378673 28378673 G A MPP7 Silent p.D350D 0.19 TCGA-BR-6802-01 10 33209310 33209310 G T ITGB1 Missense_Mutation p.L378I 0.17 deleterious(0) probably_damaging(0.982) TCGA-BR-6802-01 10 33475246 33475246 G A NRP1 Missense_Mutation p.P745S 0.05 tolerated(0.51) benign(0.06) TCGA-BR-6802-01 10 43292065 43292065 A C BMS1 Missense_Mutation p.N458T 0.12 tolerated(0.3) benign(0.103) TCGA-BR-6802-01 10 435950 435950 C A DIP2C Missense_Mutation p.Q526H 0.21 tolerated(0.25) probably_damaging(0.942) TCGA-BR-6802-01 10 44139887 44139887 G A ZNF32 Nonsense_Mutation p.R145* 0.15 TCGA-BR-6802-01 10 44871450 44871450 T - CXCL12 3'Flank 0.15 TCGA-BR-6802-01 10 46961958 46961958 C T SYT15 3'UTR 0.06 TCGA-BR-6802-01 10 48416403 48416403 C T GDF2 Silent p.T97T 0.19 TCGA-BR-6802-01 10 61823946 61823946 T - ANK3 Frame_Shift_Del p.K4140Nfs*15 0.14 TCGA-BR-6802-01 10 7608006 7608006 G A ITIH5 Silent p.C838C 0.04 TCGA-BR-6802-01 10 8055710 8055710 G A TAF3 Missense_Mutation p.G862D 0.08 deleterious(0) unknown(0) TCGA-BR-6802-01 10 85981787 85981787 C T LRIT2 Silent p.P514P 0.15 TCGA-BR-6802-01 10 88230820 88230820 G A WAPAL Nonsense_Mutation p.R691* 0.12 TCGA-BR-6802-01 10 96484237 96484237 C A CYP2C18 Missense_Mutation p.L366M 0.12 deleterious(0.04) benign(0.363) TCGA-BR-6802-01 10 98742860 98742860 G T C10orf12 Missense_Mutation p.E571D 0.11 deleterious(0.01) benign(0.033) TCGA-BR-6802-01 11 10327144 10327144 G T ADM 5'UTR 0.22 TCGA-BR-6802-01 11 105880396 105880396 G A MSANTD4 Nonsense_Mutation p.R302* 0.06 TCGA-BR-6802-01 11 108164110 108164110 T C ATM Missense_Mutation p.L1561P 0.18 tolerated(0.11) benign(0.304) TCGA-BR-6802-01 11 118516454 118516454 G A PHLDB1 Missense_Mutation p.A1140T 0.11 deleterious(0.04) benign(0.005) TCGA-BR-6802-01 11 119054449 119054449 T C NLRX1 3'UTR 0.22 TCGA-BR-6802-01 11 120008403 120008403 C - TRIM29 Frame_Shift_Del p.A113Lfs*146 0.17 TCGA-BR-6802-01 11 120176450 120176450 T C POU2F3 Missense_Mutation p.M244T 0.20 deleterious(0) probably_damaging(1) TCGA-BR-6802-01 11 120833350 120833350 C T GRIK4 Silent p.G742G 0.09 TCGA-BR-6802-01 11 120976660 120976660 A G TECTA Missense_Mutation p.Y62C 0.09 deleterious(0) probably_damaging(0.999) TCGA-BR-6802-01 11 124120777 124120777 G A OR8G1 Missense_Mutation p.A119T 0.16 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-BR-6802-01 11 126294613 126294613 G A KIRREL3 Silent p.S733S 0.13 TCGA-BR-6802-01 11 1269330 1269330 C T MUC5B Silent p.T3740T 0.14 TCGA-BR-6802-01 11 13393740 13393740 G T ARNTL Missense_Mutation p.S283I 0.15 deleterious(0) benign(0.059) TCGA-BR-6802-01 11 17190440 17190440 A G PIK3C2A Silent p.N283N 0.10 TCGA-BR-6802-01 11 18231374 18231374 G A RP11-113D6.10 Missense_Mutation p.A54T 0.11 tolerated(0.3) benign(0.06) TCGA-BR-6802-01 11 19251862 19251862 C A E2F8 Missense_Mutation p.Q428H 0.10 deleterious(0.04) possibly_damaging(0.67) TCGA-BR-6802-01 11 22387116 22387116 A G SLC17A6 Missense_Mutation p.M258V 0.11 tolerated(0.78) benign(0.001) TCGA-BR-6802-01 11 2428999 2428999 C T TRPM5 Missense_Mutation p.A976T 0.11 deleterious(0) probably_damaging(0.956) TCGA-BR-6802-01 11 34133754 34133754 G C NAT10 Missense_Mutation p.G119A 0.16 deleterious(0) probably_damaging(0.964) TCGA-BR-6802-01 11 36520142 36520142 A T TRAF6 Missense_Mutation p.N115K 0.05 tolerated(0.3) benign(0.001) TCGA-BR-6802-01 11 373264 373264 T C B4GALNT4 Silent p.A203A 0.12 TCGA-BR-6802-01 11 4608096 4608096 T C OR52I2 Silent p.I18I 0.12 TCGA-BR-6802-01 11 48157816 48157816 G - PTPRJ Frame_Shift_Del p.D616Tfs*19 0.14 TCGA-BR-6802-01 11 4843262 4843262 C T OR51F2 Missense_Mutation p.A216V 0.15 tolerated(0.91) benign(0.101) TCGA-BR-6802-01 11 5529610 5529610 G A UBQLN3 Silent p.G393G 0.05 TCGA-BR-6802-01 11 57472562 57472562 A G MED19 Silent p.P119P 0.11 TCGA-BR-6802-01 11 60697990 60697990 T C TMEM132A Missense_Mutation p.V292A 0.13 tolerated(0.09) benign(0.028) TCGA-BR-6802-01 11 61071397 61071397 G A DDB1 Silent p.G924G 0.06 TCGA-BR-6802-01 11 63884259 63884259 G A FLRT1 Missense_Mutation p.A174T 0.20 tolerated(0.14) benign(0.043) TCGA-BR-6802-01 11 64428414 64428414 G A NRXN2 Missense_Mutation p.R666C 0.14 deleterious(0) benign(0.036) TCGA-BR-6802-01 11 64824840 64824840 C T NAALADL1 Intron 0.16 TCGA-BR-6802-01 11 65124144 65124144 G A TIGD3 Missense_Mutation p.A289T 0.14 tolerated(0.37) benign(0.016) TCGA-BR-6802-01 11 65637592 65637592 C T EFEMP2 Missense_Mutation p.D203N 0.11 deleterious(0) probably_damaging(0.999) TCGA-BR-6802-01 11 65688958 65688958 G - DRAP1 3'UTR 0.09 TCGA-BR-6802-01 11 66332220 66332220 C T CTSF Missense_Mutation p.G408D 0.17 deleterious(0) probably_damaging(1) TCGA-BR-6802-01 11 66613485 66613485 G A RCE1 Silent p.T303T 0.15 TCGA-BR-6802-01 11 66838974 66838974 C T RHOD Silent p.N178N 0.18 TCGA-BR-6802-01 11 67187277 67187277 C T CARNS1 Missense_Mutation p.R361W 0.56 deleterious(0) probably_damaging(0.983) TCGA-BR-6802-01 11 67559667 67559667 T - FAM86C2P RNA 0.11 TCGA-BR-6802-01 11 6806831 6806831 C T OR2AG1 Missense_Mutation p.A188V 0.05 tolerated(0.21) benign(0.248) TCGA-BR-6802-01 11 70189942 70189942 G A PPFIA1 Silent p.A625A 0.31 TCGA-BR-6802-01 11 7021534 7021534 A G ZNF214 Silent p.H460H 0.14 TCGA-BR-6802-01 11 71724190 71724190 C - NUMA1 Frame_Shift_Del p.L1454Wfs*54 0.13 TCGA-BR-6802-01 11 89424639 89424639 A C FOLH1B RNA 0.13 TCGA-BR-6802-01 12 100451350 100451350 T - UHRF1BP1L Frame_Shift_Del p.G1142Efs*17 0.15 TCGA-BR-6802-01 12 1005427 1005427 C T WNK1 Missense_Mutation p.A1925V 0.20 tolerated(0.19) benign(0.028) TCGA-BR-6802-01 12 101682762 101682763 - A UTP20 Frame_Shift_Ins p.L183Tfs*9 0.19 TCGA-BR-6802-01 12 108912784 108912784 C T FICD Silent p.P303P 0.12 TCGA-BR-6802-01 12 113733856 113733856 G A TPCN1 Missense_Mutation p.R881H 0.08 deleterious(0) unknown(0) TCGA-BR-6802-01 12 120128090 120128090 G - CIT Frame_Shift_Del p.L2018Wfs*36 0.12 TCGA-BR-6802-01 12 120636391 120636391 A G RPLP0 Missense_Mutation p.I206T 0.14 deleterious(0) probably_damaging(0.911) TCGA-BR-6802-01 12 13065520 13065520 C T GPRC5A 3'UTR 0.20 TCGA-BR-6802-01 12 131476867 131476867 A G GPR133 Missense_Mutation p.Y299C 0.06 deleterious(0.01) probably_damaging(0.91) TCGA-BR-6802-01 12 133254218 133254218 G A POLE Silent p.R222R 0.10 TCGA-BR-6802-01 12 133295443 133295443 G A PGAM5 Intron 0.14 TCGA-BR-6802-01 12 21665273 21665273 T C GOLT1B Missense_Mutation p.V114A 0.11 deleterious(0.01) benign(0.307) TCGA-BR-6802-01 12 22035726 22035726 C T ABCC9 Missense_Mutation p.A665T 0.15 tolerated(0.87) benign(0.002) TCGA-BR-6802-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.18 deleterious(0.04) probably_damaging(0.993) TCGA-BR-6802-01 12 26784907 26784907 G A ITPR2 Silent p.S942S 0.14 TCGA-BR-6802-01 12 26839488 26839488 C T ITPR2 Silent p.P358P 0.13 TCGA-BR-6802-01 12 27181274 27181274 G T MED21 Missense_Mutation p.E105D 0.12 tolerated(0.06) possibly_damaging(0.534) TCGA-BR-6802-01 12 33579288 33579288 C T SYT10 Silent p.Q98Q 0.12 TCGA-BR-6802-01 12 40672043 40672043 G T LRRK2 Nonsense_Mutation p.G741* 0.15 TCGA-BR-6802-01 12 41967251 41967251 G A PDZRN4 Silent p.K890K 0.08 TCGA-BR-6802-01 12 42491296 42491296 T C GXYLT1 Missense_Mutation p.Y370C 0.11 deleterious(0) probably_damaging(0.987) TCGA-BR-6802-01 12 45410052 45410052 C T DBX2 3'UTR 0.09 TCGA-BR-6802-01 12 46246350 46246350 C T ARID2 Nonsense_Mutation p.Q1482* 0.10 TCGA-BR-6802-01 12 46594965 46594965 T - SLC38A1 Frame_Shift_Del p.M307Cfs*18 0.17 TCGA-BR-6802-01 12 49087792 49087792 G A CCNT1 Missense_Mutation p.A402V 0.16 tolerated(0.13) probably_damaging(0.971) TCGA-BR-6802-01 12 50029022 50029022 G A PRPF40B Missense_Mutation p.R381H 0.14 deleterious(0) probably_damaging(0.966) TCGA-BR-6802-01 12 53069130 53069130 G A KRT1 Silent p.G594G 0.16 TCGA-BR-6802-01 12 53225246 53225246 C - KRT79 Frame_Shift_Del p.R215Gfs*58 0.12 TCGA-BR-6802-01 12 5603459 5603459 C T NTF3 Missense_Mutation p.P40S 0.14 tolerated(0.3) probably_damaging(0.968) TCGA-BR-6802-01 12 5603725 5603725 G A NTF3 Silent p.P128P 0.08 TCGA-BR-6802-01 12 63544484 63544484 C T AVPR1A Missense_Mutation p.V45M 0.15 tolerated(0.11) benign(0.06) TCGA-BR-6802-01 12 65609822 65609822 A G LEMD3 Silent p.A542A 0.09 TCGA-BR-6802-01 12 6925311 6925311 A T CD4 Missense_Mutation p.T233S 0.18 tolerated(0.5) benign(0.051) TCGA-BR-6802-01 12 71977713 71977713 T - LGR5 Frame_Shift_Del p.L643Cfs*24 0.23 TCGA-BR-6802-01 12 7531592 7531592 C T CD163L1 Missense_Mutation p.A785T 0.05 deleterious(0) probably_damaging(0.967) TCGA-BR-6802-01 12 7981304 7981304 C T SLC2A14 Silent p.T247T 0.20 TCGA-BR-6802-01 12 96641453 96641453 G A ELK3 Missense_Mutation p.A315T 0.29 tolerated(0.07) probably_damaging(0.998) TCGA-BR-6802-01 13 111315833 111315833 T - CARS2 Frame_Shift_Del p.M318Cfs*5 0.18 TCGA-BR-6802-01 13 113771902 113771902 C T F7 Missense_Mutation p.A266V 0.13 tolerated(1) benign(0.006) TCGA-BR-6802-01 13 33591184 33591184 C T KL Silent p.D202D 0.12 TCGA-BR-6802-01 13 43918697 43918697 G A ENOX1 Missense_Mutation p.A338V 0.05 tolerated(0.1) benign(0.412) TCGA-BR-6802-01 13 46585554 46585554 T - ZC3H13 Frame_Shift_Del p.K195Rfs*18 0.14 TCGA-BR-6802-01 13 79191059 79191059 G A RNF219 Silent p.G279G 0.12 TCGA-BR-6802-01 13 99449686 99449686 G A DOCK9 Nonsense_Mutation p.R2006* 0.19 TCGA-BR-6802-01 14 105349144 105349144 C A CEP170B Silent p.A184A 0.12 TCGA-BR-6802-01 14 105411774 105411774 C T AHNAK2 Silent p.A3338A 0.11 TCGA-BR-6802-01 14 106471382 106471382 G T IGHV1-3 Missense_Mutation p.A72D 0.13 deleterious(0) benign(0.089) TCGA-BR-6802-01 14 24532580 24532580 C T LRRC16B Silent p.I939I 0.17 TCGA-BR-6802-01 14 36159176 36159176 G A RALGAPA1 Missense_Mutation p.T767I 0.12 tolerated(0.14) benign(0.249) TCGA-BR-6802-01 14 36194349 36194349 G A RALGAPA1 Silent p.L583L 0.08 TCGA-BR-6802-01 14 38296552 38296552 A G TTC6 Missense_Mutation p.H1760R 0.07 tolerated(0.06) possibly_damaging(0.877) TCGA-BR-6802-01 14 38679601 38679601 G A SSTR1 Missense_Mutation p.R336H 0.08 deleterious(0.01) possibly_damaging(0.477) TCGA-BR-6802-01 14 64630227 64630227 G A SYNE2 Silent p.P5469P 0.19 TCGA-BR-6802-01 14 72054698 72054698 C T SIPA1L1 Missense_Mutation p.R37W 0.18 deleterious(0) probably_damaging(0.993) TCGA-BR-6802-01 14 73029132 73029132 C T RGS6 Missense_Mutation p.S477L 0.11 tolerated(0.08) benign(0.004) TCGA-BR-6802-01 14 73718470 73718470 C T PAPLN Missense_Mutation p.R230W 0.18 deleterious(0) probably_damaging(0.996) TCGA-BR-6802-01 14 74205491 74205491 C T ELMSAN1 Silent p.S407S 0.24 TCGA-BR-6802-01 14 77808279 77808279 A T TMED8 Silent p.G271G 0.17 TCGA-BR-6802-01 14 94395003 94395003 G A FAM181A Silent p.Q186Q 0.14 TCGA-BR-6802-01 15 33873841 33873841 C T RYR3 Silent p.L524L 0.07 TCGA-BR-6802-01 15 42005615 42005615 G T MGA Missense_Mutation p.E1117D 0.29 tolerated(0.5) benign(0.003) TCGA-BR-6802-01 15 43714236 43714236 T G TP53BP1 Missense_Mutation p.D1306A 0.22 deleterious(0) possibly_damaging(0.894) TCGA-BR-6802-01 15 45410281 45410281 T - DUOXA1 Intron 0.17 TCGA-BR-6802-01 15 49776672 49776672 G A FGF7 Missense_Mutation p.A186T 0.21 tolerated(1) benign(0.015) TCGA-BR-6802-01 15 50773879 50773880 - A USP8 Frame_Shift_Ins p.N476Kfs*35 0.13 TCGA-BR-6802-01 15 51514616 51514616 G A CYP19A1 Silent p.D186D 0.10 TCGA-BR-6802-01 15 63069014 63069014 G A TLN2 Missense_Mutation p.A1807T 0.08 tolerated(0.1) benign(0.298) TCGA-BR-6802-01 15 65489719 65489719 G A CILP Nonsense_Mutation p.R969* 0.19 TCGA-BR-6802-01 15 65871779 65871779 C T VWA9 Silent p.T451T 0.14 TCGA-BR-6802-01 15 65891302 65891302 G A VWA9 Silent p.C114C 0.17 TCGA-BR-6802-01 15 68582994 68582994 T C FEM1B Missense_Mutation p.V433A 0.19 tolerated(0.53) benign(0) TCGA-BR-6802-01 15 72020961 72020961 C T THSD4 Silent p.G477G 0.10 TCGA-BR-6802-01 15 72956779 72956779 G A GOLGA6B Silent p.E476E 0.06 TCGA-BR-6802-01 15 74315644 74315644 C T PML Missense_Mutation p.R360C 0.19 deleterious(0.04) benign(0.168) TCGA-BR-6802-01 15 79215392 79215392 T - CTSH Frame_Shift_Del p.N292Mfs*8 0.15 TCGA-BR-6802-01 15 82564107 82564107 A - FAM154B Frame_Shift_Del p.G75Efs*35 0.08 TCGA-BR-6802-01 15 86261259 86261259 A G AKAP13 Missense_Mutation p.E1961G 0.10 deleterious(0) probably_damaging(0.985) TCGA-BR-6802-01 15 89424594 89424594 G T HAPLN3 Missense_Mutation p.L163M 0.08 deleterious(0.02) probably_damaging(0.996) TCGA-BR-6802-01 15 90125982 90125982 C T TICRR Silent p.G240G 0.14 TCGA-BR-6802-01 15 91454123 91454123 G T MAN2A2 Missense_Mutation p.A603S 0.16 tolerated(0.05) probably_damaging(0.999) TCGA-BR-6802-01 16 12875064 12875064 G A CPPED1 Silent p.G89G 0.26 TCGA-BR-6802-01 16 16142119 16142120 - C ABCC1 Frame_Shift_Ins p.L449Pfs*124 0.19 TCGA-BR-6802-01 16 16218650 16218650 C T ABCC1 Silent p.L1199L 0.12 TCGA-BR-6802-01 16 22144335 22144335 G A VWA3A Missense_Mutation p.A663T 0.23 deleterious(0.03) possibly_damaging(0.882) TCGA-BR-6802-01 16 24802619 24802619 G A TNRC6A Missense_Mutation p.G886S 0.17 tolerated(0.06) probably_damaging(1) TCGA-BR-6802-01 16 2499405 2499405 C T CCNF Silent p.Y447Y 0.12 TCGA-BR-6802-01 16 30794465 30794465 G A ZNF629 Missense_Mutation p.T395M 0.14 deleterious(0.02) probably_damaging(1) TCGA-BR-6802-01 16 31214142 31214142 T C C16orf98 Missense_Mutation p.V123A 0.25 unknown(0) TCGA-BR-6802-01 16 48594880 48594880 G A N4BP1 Silent p.C558C 0.13 TCGA-BR-6802-01 16 49315161 49315161 G A CBLN1 Silent p.H72H 0.09 TCGA-BR-6802-01 16 53191220 53191220 G A CHD9 Missense_Mutation p.E407K 0.28 possibly_damaging(0.593) TCGA-BR-6802-01 16 58149340 58149340 G A C16orf80 Missense_Mutation p.R100C 0.07 deleterious(0) benign(0.15) TCGA-BR-6802-01 16 67043078 67043078 T G CES4A 3'UTR 0.06 TCGA-BR-6802-01 16 68013621 68013621 A G DPEP3 Missense_Mutation p.L137P 0.14 deleterious(0.02) probably_damaging(0.997) TCGA-BR-6802-01 16 68110548 68110548 G A DUS2 Missense_Mutation p.A366T 0.16 tolerated(0.46) benign(0.007) TCGA-BR-6802-01 16 69964094 69964094 C T WWP2 Nonsense_Mutation p.R460* 0.28 TCGA-BR-6802-01 16 70708342 70708342 T C MTSS1L Missense_Mutation p.Y307C 0.12 deleterious(0) probably_damaging(0.999) TCGA-BR-6802-01 16 72158677 72158677 C T PMFBP1 Missense_Mutation p.D860N 0.16 tolerated(0.06) possibly_damaging(0.45) TCGA-BR-6802-01 16 836929 836929 C A RPUSD1 Splice_Site p.X137_splice 0.13 TCGA-BR-6802-01 16 83933108 83933108 C T MLYCD Missense_Mutation p.A120V 0.22 deleterious(0.03) possibly_damaging(0.531) TCGA-BR-6802-01 16 84050219 84050219 G A SLC38A8 Missense_Mutation p.T356I 0.14 tolerated(0.41) benign(0.023) TCGA-BR-6802-01 16 84485577 84485577 C A ATP2C2 Missense_Mutation p.L571I 0.13 tolerated(0.09) possibly_damaging(0.808) TCGA-BR-6802-01 16 85839401 85839401 A G COX4I1 Missense_Mutation p.T102A 0.07 deleterious(0) possibly_damaging(0.841) TCGA-BR-6802-01 17 14139301 14139301 G A CDRT15 Silent p.L147L 0.12 TCGA-BR-6802-01 17 1783866 1783866 C T RPA1 Silent p.P374P 0.18 TCGA-BR-6802-01 17 27958581 27958581 C T SSH2 Missense_Mutation p.A1184T 0.12 deleterious_low_confidence(0.02) benign(0.002) TCGA-BR-6802-01 17 31618768 31618768 G A ASIC2 Silent p.R122R 0.22 TCGA-BR-6802-01 17 34340329 34340329 G A CCL23 Nonsense_Mutation p.R108* 0.14 TCGA-BR-6802-01 17 37879658 37879658 G A ERBB2 Missense_Mutation p.R678Q 0.12 tolerated(0.19) benign(0.022) TCGA-BR-6802-01 17 39623484 39623484 G A KRT32 Missense_Mutation p.R32W 0.11 deleterious(0) possibly_damaging(0.791) TCGA-BR-6802-01 17 41832889 41832889 G A SOST Missense_Mutation p.R155C 0.10 deleterious(0) probably_damaging(0.922) TCGA-BR-6802-01 17 46703515 46703515 C T HOXB9 Silent p.P39P 0.15 TCGA-BR-6802-01 17 48603504 48603504 G A MYCBPAP Missense_Mutation p.R725Q 0.13 tolerated(0.86) benign(0.01) TCGA-BR-6802-01 17 6376029 6376029 G A PITPNM3 Silent p.S459S 0.16 TCGA-BR-6802-01 17 75189591 75189591 A - SEC14L1 Frame_Shift_Del p.I147Lfs*3 0.18 TCGA-BR-6802-01 17 7612525 7612525 C - EFNB3 Frame_Shift_Del p.L220Cfs*74 0.14 TCGA-BR-6802-01 17 7707688 7707688 G T DNAH2 Missense_Mutation p.E3029D 0.12 probably_damaging(0.992) TCGA-BR-6802-01 17 7753402 7753402 C T KDM6B Missense_Mutation p.R1194W 0.10 probably_damaging(0.996) TCGA-BR-6802-01 17 8216372 8216372 G A ARHGEF15 Missense_Mutation p.R245Q 0.21 tolerated_low_confidence(0.08) benign(0.131) TCGA-BR-6802-01 17 8218457 8218457 T G ARHGEF15 Silent p.P374P 0.11 TCGA-BR-6802-01 18 13069103 13069103 G A CEP192 Missense_Mutation p.A1660T 0.08 tolerated(0.33) possibly_damaging(0.621) TCGA-BR-6802-01 18 13671878 13671878 C T FAM210A Missense_Mutation p.A190T 0.10 deleterious(0.04) probably_damaging(1) TCGA-BR-6802-01 18 24035755 24035755 C T KCTD1 Silent p.T242T 0.07 TCGA-BR-6802-01 18 25572682 25572682 A G CDH2 Silent p.P427P 0.12 TCGA-BR-6802-01 18 30554568 30554568 C T CCDC178 Silent p.R822R 0.20 TCGA-BR-6802-01 18 43262295 43262295 G A SLC14A2 Silent p.P858P 0.06 TCGA-BR-6802-01 18 67425047 67425047 G A DOK6 Missense_Mutation p.R265H 0.09 deleterious(0) probably_damaging(0.993) TCGA-BR-6802-01 18 74963015 74963015 G A GALR1 Missense_Mutation p.A171T 0.16 deleterious(0.05) possibly_damaging(0.595) TCGA-BR-6802-01 18 76757125 76757125 G A SALL3 Missense_Mutation p.G1236S 0.12 deleterious(0.01) probably_damaging(0.98) TCGA-BR-6802-01 18 76870408 76870408 G A ATP9B Missense_Mutation p.R116H 0.07 deleterious(0) probably_damaging(1) TCGA-BR-6802-01 19 11468409 11468409 C T DKFZP761J1410 Silent p.F20F 0.21 TCGA-BR-6802-01 19 12061328 12061328 C A ZNF700 3'UTR 0.16 TCGA-BR-6802-01 19 12243915 12243916 - GT ZNF20 Frame_Shift_Ins p.E363Lfs*176 0.14 TCGA-BR-6802-01 19 16284237 16284237 T C CIB3 Missense_Mutation p.Q17R 0.09 deleterious(0.01) probably_damaging(0.985) TCGA-BR-6802-01 19 18273240 18273240 C T PIK3R2 Missense_Mutation p.R345W 0.10 deleterious(0) possibly_damaging(0.897) TCGA-BR-6802-01 19 19337381 19337381 G A NCAN Missense_Mutation p.V387I 0.13 tolerated(0.15) benign(0.001) TCGA-BR-6802-01 19 19656302 19656302 G A CILP2 Missense_Mutation p.R983H 0.09 tolerated(0.49) benign(0.001) TCGA-BR-6802-01 19 20808338 20808338 T - ZNF626 Frame_Shift_Del p.G116Dfs*3 0.18 TCGA-BR-6802-01 19 21117776 21117776 A C ZNF85 Missense_Mutation p.D51A 0.15 deleterious(0.01) possibly_damaging(0.844) TCGA-BR-6802-01 19 3546376 3546376 C A MFSD12 Missense_Mutation p.W357C 0.32 possibly_damaging(0.74) TCGA-BR-6802-01 19 36033284 36033284 C T GAPDHS Silent p.G171G 0.08 TCGA-BR-6802-01 19 37211245 37211245 A G ZNF567 Missense_Mutation p.K509R 0.06 deleterious(0.02) probably_damaging(0.995) TCGA-BR-6802-01 19 39789226 39789226 T C IFNL1 3'UTR 0.14 TCGA-BR-6802-01 19 40197860 40197860 T C LGALS14 Silent p.D74D 0.14 TCGA-BR-6802-01 19 40434210 40434210 A G FCGBP Missense_Mutation p.L20S 0.17 benign(0.021) TCGA-BR-6802-01 19 42791717 42791717 G A CIC Silent p.R201R 0.15 TCGA-BR-6802-01 19 4292545 4292545 T - TMIGD2 3'UTR 0.09 TCGA-BR-6802-01 19 4504766 4504766 C T PLIN4 Missense_Mutation p.C1260Y 0.17 tolerated(0.06) probably_damaging(0.994) TCGA-BR-6802-01 19 45317997 45317997 C T BCAM Missense_Mutation p.T353M 0.13 deleterious(0.03) benign(0.179) TCGA-BR-6802-01 19 45593386 45593386 T C GEMIN7 Missense_Mutation p.V5A 0.16 deleterious(0.03) benign(0.01) TCGA-BR-6802-01 19 49000732 49000732 G - LMTK3 Frame_Shift_Del p.K1228Sfs*117 0.16 TCGA-BR-6802-01 19 49713591 49713591 G A TRPM4 Missense_Mutation p.R1086H 0.12 tolerated(0.91) benign(0.004) TCGA-BR-6802-01 19 50185189 50185189 G A PRMT1 Missense_Mutation p.R72H 0.09 deleterious(0.02) possibly_damaging(0.81) TCGA-BR-6802-01 19 50266392 50266392 C A TSKS Missense_Mutation p.R38M 0.14 deleterious(0.03) benign(0.019) TCGA-BR-6802-01 19 50360277 50360277 G A PTOV1 Missense_Mutation p.V202M 0.17 deleterious(0.03) probably_damaging(0.999) TCGA-BR-6802-01 19 50882274 50882274 G A NR1H2 Missense_Mutation p.A255T 0.14 tolerated(0.56) benign(0.002) TCGA-BR-6802-01 19 50905604 50905604 C T POLD1 Silent p.Y244Y 0.07 TCGA-BR-6802-01 19 51826934 51826934 C T IGLON5 Silent p.H59H 0.14 TCGA-BR-6802-01 19 5240270 5240270 C T PTPRS Silent p.P548P 0.17 TCGA-BR-6802-01 19 52825647 52825647 C T ZNF480 Nonsense_Mutation p.Q382* 0.16 TCGA-BR-6802-01 19 54242600 54242600 G A MIR518A2 RNA 0.17 TCGA-BR-6802-01 19 56203248 56203248 C T EPN1 Silent p.G383G 0.14 TCGA-BR-6802-01 19 56539649 56539649 A C NLRP5 Missense_Mutation p.T684P 0.15 tolerated(0.07) benign(0.345) TCGA-BR-6802-01 19 56935314 56935314 T G ZNF583 Silent p.V429V 0.12 TCGA-BR-6802-01 19 57646554 57646555 - T ZIM3 Frame_Shift_Ins p.I384Nfs*9 0.12 TCGA-BR-6802-01 19 6441978 6441978 C T SLC25A23 3'UTR 0.11 TCGA-BR-6802-01 19 6467915 6467916 - C DENND1C Frame_Shift_Ins p.D669Gfs*23 0.18 TCGA-BR-6802-01 19 6924840 6924840 C T EMR1 Missense_Mutation p.A648V 0.18 deleterious(0) probably_damaging(1) TCGA-BR-6802-01 19 7607530 7607530 G A PNPLA6 Missense_Mutation p.G455R 0.14 tolerated(0.26) benign(0.096) TCGA-BR-6802-01 19 9085173 9085173 A G MUC16 Silent p.N2214N 0.19 TCGA-BR-6802-01 19 9090794 9090794 C T MUC16 Missense_Mutation p.E341K 0.19 unknown(0) TCGA-BR-6802-01 1 107867388 107867388 A G NTNG1 Missense_Mutation p.Y244C 0.17 deleterious(0) probably_damaging(1) TCGA-BR-6802-01 1 108417623 108417623 T C VAV3 Missense_Mutation p.N74S 0.10 deleterious(0) probably_damaging(0.946) TCGA-BR-6802-01 1 110168017 110168017 C T AMPD2 Missense_Mutation p.R116C 0.17 tolerated(0.08) possibly_damaging(0.791) TCGA-BR-6802-01 1 112318756 112318756 G A KCND3 Silent p.G637G 0.19 TCGA-BR-6802-01 1 11561740 11561740 C T PTCHD2 Missense_Mutation p.R231W 0.12 deleterious(0.04) benign(0) TCGA-BR-6802-01 1 117509774 117509774 C T PTGFRN Silent p.G627G 0.08 TCGA-BR-6802-01 1 117944904 117944904 T C MAN1A2 Silent p.I133I 0.10 TCGA-BR-6802-01 1 151849482 151849482 G A THEM4 Missense_Mutation p.A226V 0.15 deleterious(0) probably_damaging(0.967) TCGA-BR-6802-01 1 152283959 152283959 T C FLG Missense_Mutation p.R1135G 0.15 benign(0.152) TCGA-BR-6802-01 1 152284170 152284170 C T FLG Nonsense_Mutation p.W1064* 0.16 TCGA-BR-6802-01 1 157497672 157497672 G A FCRL5 Silent p.R565R 0.13 TCGA-BR-6802-01 1 158576516 158576516 C T OR10Z1 Silent p.G96G 0.03 TCGA-BR-6802-01 1 161163166 161163166 C T ADAMTS4 Missense_Mutation p.R583H 0.18 deleterious(0) probably_damaging(0.999) TCGA-BR-6802-01 1 16268919 16268919 C T ZBTB17 Intron 0.13 TCGA-BR-6802-01 1 178411966 178411966 G A RASAL2 Missense_Mutation p.E362K 0.10 deleterious(0) probably_damaging(0.997) TCGA-BR-6802-01 1 179077893 179077894 - T ABL2 Frame_Shift_Ins p.S837Ifs*55 0.11 TCGA-BR-6802-01 1 17952451 17952451 C T ARHGEF10L Nonsense_Mutation p.R440* 0.19 TCGA-BR-6802-01 1 180135652 180135652 G A QSOX1 Missense_Mutation p.A98T 0.18 deleterious(0.01) probably_damaging(0.988) TCGA-BR-6802-01 1 186280649 186280649 A T PRG4 Silent p.G1238G 0.09 TCGA-BR-6802-01 1 197009701 197009701 G A F13B Nonsense_Mutation p.Q635* 0.13 TCGA-BR-6802-01 1 197704784 197704784 G A DENND1B Intron 0.09 TCGA-BR-6802-01 1 203026010 203026010 G A PPFIA4 Missense_Mutation p.G274D 0.10 deleterious(0) probably_damaging(0.95) TCGA-BR-6802-01 1 203798733 203798733 G A ZC3H11A Silent p.T151T 0.08 TCGA-BR-6802-01 1 207737304 207737304 C T CR1 Missense_Mutation p.P1228S 0.11 tolerated(0.06) possibly_damaging(0.902) TCGA-BR-6802-01 1 210415495 210415495 G A SERTAD4 Missense_Mutation p.G295D 0.19 tolerated(0.64) benign(0) TCGA-BR-6802-01 1 212220516 212220516 G A DTL Missense_Mutation p.V101I 0.04 tolerated(0.25) benign(0.171) TCGA-BR-6802-01 1 22848916 22848916 G A ZBTB40 Silent p.T1086T 0.18 TCGA-BR-6802-01 1 235505913 235505913 A - GGPS1 Frame_Shift_Del p.K245Nfs*10 0.20 TCGA-BR-6802-01 1 237804199 237804199 A G RYR2 Missense_Mutation p.D2373G 0.09 benign(0.008) TCGA-BR-6802-01 1 248458331 248458331 G A OR2T12 Missense_Mutation p.R184C 0.11 deleterious(0.02) benign(0.26) TCGA-BR-6802-01 1 248737709 248737709 A C OR2T34 Missense_Mutation p.V117G 0.21 tolerated(0.12) benign(0.026) TCGA-BR-6802-01 1 26360246 26360246 G A EXTL1 Silent p.T526T 0.19 TCGA-BR-6802-01 1 26524487 26524487 C A CATSPER4 Silent p.P199P 0.19 TCGA-BR-6802-01 1 27099008 27099008 C T ARID1A Nonsense_Mutation p.Q1142* 0.10 TCGA-BR-6802-01 1 27106861 27106861 C T ARID1A Nonsense_Mutation p.R2158* 0.11 TCGA-BR-6802-01 1 27332693 27332693 G A FAM46B Silent p.Y340Y 0.32 TCGA-BR-6802-01 1 28948573 28948573 T C TAF12 Silent p.S7S 0.13 TCGA-BR-6802-01 1 31655387 31655387 C A NKAIN1 Missense_Mutation p.E174D 0.14 tolerated(0.07) benign(0.007) TCGA-BR-6802-01 1 32201998 32201998 G A BAI2 Intron 0.13 TCGA-BR-6802-01 1 33411121 33411121 T C RNF19B Missense_Mutation p.S420G 0.19 deleterious(0) possibly_damaging(0.708) TCGA-BR-6802-01 1 34554619 34554619 C T CSMD2 Silent p.S81S 0.16 TCGA-BR-6802-01 1 3697555 3697555 A - LRRC47 3'UTR 0.14 TCGA-BR-6802-01 1 43119565 43119565 G A CCDC30 Missense_Mutation p.A740T 0.14 tolerated(0.06) benign(0.229) TCGA-BR-6802-01 1 44426892 44426892 T A IPO13 Missense_Mutation p.F768I 0.14 tolerated(0.48) benign(0.009) TCGA-BR-6802-01 1 47560306 47560306 C T CYP4Z1 Missense_Mutation p.R281C 0.13 deleterious(0.02) benign(0.095) TCGA-BR-6802-01 1 59132821 59132821 G T MYSM1 Silent p.A640A 0.18 TCGA-BR-6802-01 1 65851439 65851439 G A DNAJC6 Missense_Mutation p.R282H 0.12 tolerated(0.35) benign(0) TCGA-BR-6802-01 1 67313177 67313177 A G WDR78 Silent p.P427P 0.16 TCGA-BR-6802-01 1 7887631 7887631 C T PER3 Missense_Mutation p.A873V 0.08 deleterious(0.01) benign(0) TCGA-BR-6802-01 1 7995117 7995117 G A TNFRSF9 Missense_Mutation p.P167L 0.12 tolerated(0.28) benign(0.015) TCGA-BR-6802-01 1 8921363 8921363 C T ENO1 3'UTR 0.12 TCGA-BR-6802-01 1 92457862 92457862 C T BRDT Silent p.G702G 0.13 TCGA-BR-6802-01 1 94480241 94480241 G A ABCA4 Missense_Mutation p.A1773V 0.14 deleterious(0) possibly_damaging(0.904) TCGA-BR-6802-01 1 95448568 95448568 T C ALG14 3'UTR 0.24 TCGA-BR-6802-01 1 979010 979010 G A AGRN Missense_Mutation p.V566M 0.18 deleterious(0.01) possibly_damaging(0.867) TCGA-BR-6802-01 20 16488691 16488691 G A KIF16B Missense_Mutation p.A204V 0.03 tolerated(0.1) probably_damaging(0.972) TCGA-BR-6802-01 20 35060650 35060650 G A DLGAP4 Missense_Mutation p.G177D 0.18 tolerated(0.14) benign(0.006) TCGA-BR-6802-01 20 43108886 43108886 C T TTPAL Missense_Mutation p.R83C 0.08 deleterious(0) probably_damaging(0.992) TCGA-BR-6802-01 20 45004410 45004410 C T ELMO2 Missense_Mutation p.R276H 0.17 tolerated(0.08) benign(0.302) TCGA-BR-6802-01 20 48503379 48503379 G A SLC9A8 Missense_Mutation p.V544M 0.09 tolerated(0.37) benign(0.006) TCGA-BR-6802-01 20 5574004 5574004 C T GPCPD1 Missense_Mutation p.R67H 0.14 deleterious(0) probably_damaging(1) TCGA-BR-6802-01 20 61598711 61598711 C T SLC17A9 Silent p.G390G 0.09 TCGA-BR-6802-01 21 32127620 32127620 C G KRTAP21-1 Missense_Mutation p.C26S 0.11 tolerated_low_confidence(0.36) unknown(0) TCGA-BR-6802-01 21 33651281 33651281 G A MIS18A Silent p.G15G 0.16 TCGA-BR-6802-01 21 33679016 33679016 C T MRAP Missense_Mutation p.L58F 0.17 deleterious(0.03) probably_damaging(0.998) TCGA-BR-6802-01 21 37665815 37665815 A T DOPEY2 Missense_Mutation p.L2281F 0.10 tolerated(0.11) benign(0.049) TCGA-BR-6802-01 21 38862544 38862544 C G DYRK1A Missense_Mutation p.N244K 0.16 deleterious(0) probably_damaging(0.999) TCGA-BR-6802-01 21 43833294 43833294 C T UBASH3A Silent p.F172F 0.18 TCGA-BR-6802-01 21 43906511 43906511 G A RSPH1 Missense_Mutation p.T112I 0.13 tolerated(0.17) possibly_damaging(0.772) TCGA-BR-6802-01 21 46308725 46308725 T G ITGB2 Missense_Mutation p.N655H 0.14 tolerated(0.12) benign(0.297) TCGA-BR-6802-01 21 47423388 47423388 C T COL6A1 Missense_Mutation p.R850C 0.17 tolerated(0.08) benign(0.018) TCGA-BR-6802-01 21 47549166 47549166 C T COL6A2 Intron 0.12 TCGA-BR-6802-01 22 26118420 26118420 C A ADRBK2 3'UTR 0.20 TCGA-BR-6802-01 22 29121017 29121017 G T CHEK2 Silent p.R223R 0.13 TCGA-BR-6802-01 22 29444405 29444405 G A ZNRF3 Missense_Mutation p.R314Q 0.14 deleterious(0.04) probably_damaging(0.997) TCGA-BR-6802-01 22 30218382 30218382 G A ASCC2 Silent p.I161I 0.06 TCGA-BR-6802-01 22 37420785 37420785 C T MPST Missense_Mutation p.R197C 0.12 deleterious(0.02) benign(0.015) TCGA-BR-6802-01 22 38046564 38046564 T C SH3BP1 Missense_Mutation p.V477A 0.12 deleterious(0.01) possibly_damaging(0.593) TCGA-BR-6802-01 22 41676938 41676938 A G RANGAP1 Silent p.D37D 0.06 TCGA-BR-6802-01 22 44514998 44514998 C T PARVB Silent p.G151G 0.11 TCGA-BR-6802-01 22 50726198 50726198 C T PLXNB2 Silent p.P502P 0.22 TCGA-BR-6802-01 22 50944598 50944598 C T LMF2 Missense_Mutation p.A214T 0.38 deleterious(0) probably_damaging(0.962) TCGA-BR-6802-01 22 51207224 51207226 CCT - RABL2B In_Frame_Del p.E232del 0.14 TCGA-BR-6802-01 2 105858611 105858611 G A GPR45 Missense_Mutation p.R99H 0.06 tolerated(0.27) benign(0.005) TCGA-BR-6802-01 2 105886050 105886050 C T TGFBRAP1 Silent p.A695A 0.23 TCGA-BR-6802-01 2 106694342 106694342 G A C2orf40 Missense_Mutation p.G136D 0.09 tolerated(0.05) benign(0.002) TCGA-BR-6802-01 2 11315100 11315100 T C PQLC3 Missense_Mutation p.I161T 0.15 deleterious(0) possibly_damaging(0.548) TCGA-BR-6802-01 2 113277874 113277874 C T TTL Silent p.S297S 0.14 TCGA-BR-6802-01 2 11742628 11742628 G A GREB1 Missense_Mutation p.D876N 0.11 deleterious(0) probably_damaging(0.998) TCGA-BR-6802-01 2 135738842 135738842 G A MAP3K19 Missense_Mutation p.P1157S 0.10 deleterious(0) probably_damaging(0.942) TCGA-BR-6802-01 2 136473119 136473119 G T R3HDM1 Splice_Site p.X878_splice 0.10 TCGA-BR-6802-01 2 138771371 138771371 A G HNMT Missense_Mutation p.K184E 0.13 deleterious(0.03) benign(0.011) TCGA-BR-6802-01 2 154996962 154996962 T C GALNT13 Silent p.L85L 0.15 TCGA-BR-6802-01 2 169487547 169487547 A - CERS6 Frame_Shift_Del p.K155Rfs*38 0.09 TCGA-BR-6802-01 2 170101424 170101424 G A LRP2 Missense_Mutation p.S1070L 0.09 benign(0.006) TCGA-BR-6802-01 2 178482139 178482139 C T TTC30A Missense_Mutation p.A431T 0.08 deleterious(0) probably_damaging(0.991) TCGA-BR-6802-01 2 178483032 178483032 C T TTC30A Missense_Mutation p.R133K 0.13 tolerated(1) benign(0.001) TCGA-BR-6802-01 2 179423360 179423360 T G TTN Missense_Mutation p.K28942N 0.15 TCGA-BR-6802-01 2 179439680 179439680 G A TTN Missense_Mutation p.P23727S 0.16 TCGA-BR-6802-01 2 179447097 179447097 C T TTN Missense_Mutation p.R22029H 0.09 TCGA-BR-6802-01 2 179449370 179449370 T - TTN Intron 0.16 TCGA-BR-6802-01 2 179499969 179499969 T C TTN Missense_Mutation p.S13983G 0.17 TCGA-BR-6802-01 2 179501128 179501128 C A TTN Nonsense_Mutation p.E13776* 0.13 TCGA-BR-6802-01 2 198950517 198950517 C T PLCL1 Missense_Mutation p.A759V 0.15 deleterious(0.02) probably_damaging(0.954) TCGA-BR-6802-01 2 202587823 202587823 G A ALS2 Silent p.S1215S 0.11 TCGA-BR-6802-01 2 204736166 204736166 T - CTLA4 Frame_Shift_Del p.Y177Ifs*10 0.12 TCGA-BR-6802-01 2 207651571 207651571 T A FASTKD2 Silent p.A514A 0.10 TCGA-BR-6802-01 2 210561666 210561667 - A MAP2 Frame_Shift_Ins p.T1474Nfs*22 0.12 TCGA-BR-6802-01 2 211512675 211512675 G A CPS1 Missense_Mutation p.G1083D 0.04 deleterious(0) probably_damaging(1) TCGA-BR-6802-01 2 216809668 216809668 C T MREG Missense_Mutation p.R188Q 0.14 tolerated(0.46) benign(0.004) TCGA-BR-6802-01 2 216964784 216964784 C A TMEM169 Nonsense_Mutation p.S138* 0.17 TCGA-BR-6802-01 2 218683363 218683363 G A TNS1 Missense_Mutation p.A1127V 0.09 tolerated(0.32) benign(0.005) TCGA-BR-6802-01 2 219603187 219603187 C T TTLL4 Missense_Mutation p.P263L 0.10 tolerated(0.31) benign(0.002) TCGA-BR-6802-01 2 230672480 230672480 G A TRIP12 Missense_Mutation p.R766C 0.18 deleterious(0) probably_damaging(0.988) TCGA-BR-6802-01 2 233194613 233194613 C - DIS3L2 Frame_Shift_Del p.P612Rfs*33 0.15 TCGA-BR-6802-01 2 233350780 233350780 C T ECEL1 Missense_Mutation p.R195Q 0.21 tolerated(0.25) benign(0.086) TCGA-BR-6802-01 2 233407735 233407735 G A CHRNG Missense_Mutation p.A250T 0.13 tolerated(0.23) benign(0.014) TCGA-BR-6802-01 2 233652024 233652024 C T GIGYF2 Nonsense_Mutation p.R255* 0.07 TCGA-BR-6802-01 2 237076641 237076641 A C GBX2 5'UTR 0.31 TCGA-BR-6802-01 2 25467502 25467502 G A DNMT3A Missense_Mutation p.A525V 0.06 tolerated(0.19) probably_damaging(0.92) TCGA-BR-6802-01 2 48046138 48046138 C T FBXO11 Missense_Mutation p.S626N 0.11 deleterious(0.03) probably_damaging(0.998) TCGA-BR-6802-01 2 61430387 61430387 G A USP34 Silent p.D3132D 0.08 TCGA-BR-6802-01 2 64683599 64683599 G T LGALSL Missense_Mutation p.R125S 0.12 deleterious(0) benign(0.389) TCGA-BR-6802-01 2 64778860 64778861 - A AFTPH Frame_Shift_Ins p.N86Kfs*3 0.12 TCGA-BR-6802-01 2 73491512 73491512 C A FBXO41 Missense_Mutation p.R567L 0.07 tolerated(0.17) benign(0.142) TCGA-BR-6802-01 2 74689823 74689823 C T MOGS Missense_Mutation p.A365T 0.06 tolerated(0.58) benign(0.008) TCGA-BR-6802-01 2 74760069 74760069 G A HTRA2 Missense_Mutation p.R445Q 0.13 tolerated(0.36) benign(0.003) TCGA-BR-6802-01 2 85824692 85824692 T C RNF181 3'UTR 0.11 TCGA-BR-6802-01 2 89103957 89103957 G A ANKRD36BP2 RNA 0.12 TCGA-BR-6802-01 2 97784159 97784159 G A ANKRD36 Missense_Mutation p.G131R 0.09 deleterious(0.01) probably_damaging(0.998) TCGA-BR-6802-01 3 108072517 108072517 A G HHLA2 Missense_Mutation p.N103S 0.05 deleterious(0.03) probably_damaging(0.999) TCGA-BR-6802-01 3 108298166 108298166 A T KIAA1524 Missense_Mutation p.D260E 0.11 deleterious(0) possibly_damaging(0.674) TCGA-BR-6802-01 3 109049209 109049209 C A DPPA4 Intron 0.18 TCGA-BR-6802-01 3 112324517 112324517 A C CCDC80 Missense_Mutation p.L867R 0.14 deleterious(0) probably_damaging(1) TCGA-BR-6802-01 3 113320434 113320434 G T SIDT1 Splice_Site p.X349_splice 0.10 TCGA-BR-6802-01 3 124829094 124829094 C T SLC12A8 Missense_Mutation p.R333H 0.17 deleterious(0) probably_damaging(0.999) TCGA-BR-6802-01 3 12858445 12858445 A G CAND2 Missense_Mutation p.T672A 0.12 deleterious(0.04) probably_damaging(0.997) TCGA-BR-6802-01 3 129814985 129814985 C T AC083906.2 5'Flank 0.11 TCGA-BR-6802-01 3 133486949 133486949 C T TF Silent p.G521G 0.22 TCGA-BR-6802-01 3 142268410 142268411 TC - ATR Frame_Shift_Del p.E1027Dfs*21 0.11 TCGA-BR-6802-01 3 142840554 142840554 G A CHST2 Missense_Mutation p.R299H 0.31 tolerated(0.21) benign(0.009) TCGA-BR-6802-01 3 14744719 14744719 C T C3orf20 Silent p.S276S 0.10 TCGA-BR-6802-01 3 149290705 149290705 C T WWTR1 Missense_Mutation p.V172I 0.08 tolerated(0.28) benign(0.001) TCGA-BR-6802-01 3 150403619 150403619 G A FAM194A Silent p.F231F 0.09 TCGA-BR-6802-01 3 155199080 155199080 G A PLCH1 Missense_Mutation p.R1587C 0.03 deleterious(0) probably_damaging(1) TCGA-BR-6802-01 3 155203278 155203278 G A PLCH1 Silent p.G955G 0.11 TCGA-BR-6802-01 3 16237382 16237382 C T GALNT15 Missense_Mutation p.P219S 0.10 deleterious(0.01) possibly_damaging(0.492) TCGA-BR-6802-01 3 172241098 172241098 A C TNFSF10 Missense_Mutation p.L26R 0.11 deleterious(0) probably_damaging(0.996) TCGA-BR-6802-01 3 178936092 178936092 A G PIK3CA Missense_Mutation p.E545G 0.13 deleterious(0.01) probably_damaging(0.989) TCGA-BR-6802-01 3 179478997 179478997 C T USP13 Silent p.G682G 0.11 TCGA-BR-6802-01 3 184038434 184038434 C T EIF4G1 Missense_Mutation p.P192L 0.12 deleterious(0) probably_damaging(0.994) TCGA-BR-6802-01 3 184044360 184044360 C T EIF4G1 Nonsense_Mutation p.R1097* 0.14 TCGA-BR-6802-01 3 189604248 189604248 T C TP63 Missense_Mutation p.M472T 0.19 tolerated(0.3) benign(0.053) TCGA-BR-6802-01 3 194081221 194081221 G A LRRC15 Silent p.S190S 0.11 TCGA-BR-6802-01 3 195063306 195063306 T - ACAP2 Frame_Shift_Del p.N141Mfs*19 0.08 TCGA-BR-6802-01 3 195480005 195480005 T C MUC4 Missense_Mutation p.Q5142R 0.05 benign(0.063) TCGA-BR-6802-01 3 20113953 20113953 T C KAT2B Splice_Site p.X144_splice 0.15 TCGA-BR-6802-01 3 21478596 21478597 - T ZNF385D Frame_Shift_Ins p.S180Kfs*9 0.10 TCGA-BR-6802-01 3 32181857 32181857 C T GPD1L Silent p.I168I 0.10 TCGA-BR-6802-01 3 37053348 37053348 A - MLH1 Frame_Shift_Del p.K196Nfs*6 0.12 TCGA-BR-6802-01 3 38104191 38104191 T - DLEC1 Frame_Shift_Del p.P334Lfs*21 0.11 TCGA-BR-6802-01 3 38592731 38592731 G A SCN5A Missense_Mutation p.A1711V 0.07 deleterious(0) probably_damaging(0.998) TCGA-BR-6802-01 3 40499484 40499484 T C RPL14 Splice_Site p.X35_splice 0.16 TCGA-BR-6802-01 3 44684226 44684226 A - ZNF197 Frame_Shift_Del p.K536Nfs*126 0.11 TCGA-BR-6802-01 3 48602300 48602300 A G COL7A1 Missense_Mutation p.C2912R 0.11 possibly_damaging(0.86) TCGA-BR-6802-01 3 49412922 49412922 T C RHOA Missense_Mutation p.Y34C 0.32 deleterious(0) probably_damaging(1) TCGA-BR-6802-01 3 49836453 49836453 T C CDHR4 Missense_Mutation p.Q126R 0.19 tolerated(0.82) benign(0.006) TCGA-BR-6802-01 3 51196730 51196730 G A DOCK3 Missense_Mutation p.R295Q 0.12 deleterious(0) probably_damaging(0.99) TCGA-BR-6802-01 3 52883877 52883877 C T TMEM110 Missense_Mutation p.V120M 0.15 tolerated(0.2) possibly_damaging(0.537) TCGA-BR-6802-01 3 53700399 53700399 C T CACNA1D Missense_Mutation p.A318V 0.14 deleterious(0) possibly_damaging(0.711) TCGA-BR-6802-01 3 56044541 56044541 C T ERC2 Missense_Mutation p.R619Q 0.13 tolerated(0.1) benign(0.036) TCGA-BR-6802-01 3 63965643 63965643 A G ATXN7 Silent p.S184S 0.15 TCGA-BR-6802-01 3 64532503 64532503 G - ADAMTS9 Frame_Shift_Del p.S1666Vfs*7 0.09 TCGA-BR-6802-01 3 73433966 73433966 G T PDZRN3 Nonsense_Mutation p.S584* 0.10 TCGA-BR-6802-01 3 74474047 74474047 G A CNTN3 Missense_Mutation p.R135C 0.12 deleterious(0) probably_damaging(0.999) TCGA-BR-6802-01 3 78649287 78649287 T C ROBO1 Silent p.G1639G 0.23 TCGA-BR-6802-01 3 89468398 89468398 A - EPHA3 Frame_Shift_Del p.E647Rfs*9 0.11 TCGA-BR-6802-01 3 93781995 93781996 - C DHFRL1 5'UTR 0.08 TCGA-BR-6802-01 3 96962894 96962894 C G EPHA6 Missense_Mutation p.L457V 0.08 tolerated(0.94) benign(0.009) TCGA-BR-6802-01 3 97806749 97806749 G A OR5AC2 Missense_Mutation p.A245T 0.11 deleterious(0.01) probably_damaging(0.957) TCGA-BR-6802-01 3 97851699 97851699 C A OR5H1 Missense_Mutation p.P53H 0.09 tolerated(0.17) benign(0.033) TCGA-BR-6802-01 3 9802450 9802450 A G CAMK1 Missense_Mutation p.L212P 0.15 deleterious(0) probably_damaging(1) TCGA-BR-6802-01 4 115544174 115544174 C T UGT8 Silent p.H46H 0.15 TCGA-BR-6802-01 4 119176867 119176867 G T NDST3 Nonstop_Mutation p.*874Yext*2 0.09 TCGA-BR-6802-01 4 123229133 123229133 G A KIAA1109 Missense_Mutation p.A3291T 0.04 probably_damaging(0.995) TCGA-BR-6802-01 4 126389938 126389938 A T FAT4 Silent p.G4057G 0.11 TCGA-BR-6802-01 4 1343557 1343557 G A UVSSA Missense_Mutation p.R115Q 0.08 tolerated(1) benign(0.003) TCGA-BR-6802-01 4 147561536 147561536 G A POU4F2 Missense_Mutation p.R269H 0.09 deleterious(0) probably_damaging(0.991) TCGA-BR-6802-01 4 154709838 154709838 G A SFRP2 Silent p.C50C 0.08 TCGA-BR-6802-01 4 164428219 164428219 A - TMA16 Frame_Shift_Del p.V16Sfs*25 0.29 TCGA-BR-6802-01 4 184622881 184622881 A G TRAPPC11 Silent p.E961E 0.29 TCGA-BR-6802-01 4 25849011 25849011 C T SEL1L3 Missense_Mutation p.R213H 0.17 deleterious(0.05) probably_damaging(0.999) TCGA-BR-6802-01 4 42965093 42965093 G A GRXCR1 Missense_Mutation p.R190Q 0.06 tolerated(0.47) benign(0.298) TCGA-BR-6802-01 4 4303754 4303754 T - ZBTB49 Frame_Shift_Del p.H66Tfs*10 0.14 TCGA-BR-6802-01 4 47593216 47593216 T A ATP10D Missense_Mutation p.S1367T 0.14 tolerated(0.13) benign(0.219) TCGA-BR-6802-01 4 48545898 48545898 G C FRYL Missense_Mutation p.L1840V 0.09 deleterious(0.03) possibly_damaging(0.745) TCGA-BR-6802-01 4 56233814 56233814 A G SRD5A3 Missense_Mutation p.M208V 0.20 tolerated(0.76) benign(0.002) TCGA-BR-6802-01 4 6080672 6080672 C T JAKMIP1 Silent p.P432P 0.11 TCGA-BR-6802-01 4 62845287 62845287 G T LPHN3 Missense_Mutation p.D870Y 0.12 deleterious(0.02) probably_damaging(0.991) TCGA-BR-6802-01 4 71275496 71275498 ACA - PROL1 In_Frame_Del p.T152del 0.18 TCGA-BR-6802-01 4 79832739 79832739 G A BMP2K Missense_Mutation p.R1013H 0.12 deleterious_low_confidence(0) unknown(0) TCGA-BR-6802-01 4 8613861 8613861 C T CPZ Silent p.N445N 0.11 TCGA-BR-6802-01 4 88035905 88035905 C T AFF1 Silent p.G640G 0.17 TCGA-BR-6802-01 4 88535421 88535421 A G DSPP Missense_Mutation p.D536G 0.23 unknown(0) TCGA-BR-6802-01 5 112176675 112176676 - A APC Frame_Shift_Ins p.N1797Kfs*2 0.17 TCGA-BR-6802-01 5 115339034 115339034 T C AQPEP Missense_Mutation p.L665S 0.11 tolerated(0.47) possibly_damaging(0.719) TCGA-BR-6802-01 5 139905707 139905707 G A ANKHD1 Missense_Mutation p.S1540N 0.10 benign(0.175) TCGA-BR-6802-01 5 139909045 139909045 G T ANKHD1 Missense_Mutation p.G2172C 0.11 probably_damaging(0.974) TCGA-BR-6802-01 5 140039372 140039372 C A IK Silent p.S409S 0.16 TCGA-BR-6802-01 5 140531705 140531705 C T PCDHB6 Missense_Mutation p.R623C 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.855) TCGA-BR-6802-01 5 147803681 147803681 G A FBXO38 Splice_Site p.X580_splice 0.16 TCGA-BR-6802-01 5 1489881 1489881 A G LPCAT1 Missense_Mutation p.S196P 0.13 deleterious(0) probably_damaging(0.925) TCGA-BR-6802-01 5 169174437 169174437 T A DOCK2 Missense_Mutation p.S769T 0.18 tolerated(0.12) benign(0.153) TCGA-BR-6802-01 5 176333041 176333041 G A UIMC1 Silent p.D640D 0.07 TCGA-BR-6802-01 5 19571802 19571802 G C CDH18 Missense_Mutation p.P380R 0.09 deleterious(0.01) benign(0.203) TCGA-BR-6802-01 5 22143016 22143016 T - CDH12 Intron 0.11 TCGA-BR-6802-01 5 33938026 33938026 G A RXFP3 Missense_Mutation p.R394H 0.09 deleterious(0.02) benign(0.188) TCGA-BR-6802-01 5 36049272 36049272 G A UGT3A2 Missense_Mutation p.R188C 0.06 tolerated(0.18) benign(0.003) TCGA-BR-6802-01 5 37006531 37006531 G A NIPBL Missense_Mutation p.A1310T 0.20 deleterious(0) probably_damaging(0.947) TCGA-BR-6802-01 5 37314427 37314427 G T NUP155 Missense_Mutation p.A770D 0.16 deleterious(0) probably_damaging(0.999) TCGA-BR-6802-01 5 43173517 43173517 A - ZNF131 Frame_Shift_Del p.G353Efs*26 0.10 TCGA-BR-6802-01 5 71016450 71016450 T C CARTPT 3'UTR 0.33 TCGA-BR-6802-01 5 73205302 73205302 C T ARHGEF28 Silent p.G1409G 0.19 TCGA-BR-6802-01 5 75914009 75914009 C T F2RL2 Missense_Mutation p.G175S 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-BR-6802-01 5 78938657 78938657 T - PAPD4 Frame_Shift_Del p.Q228Rfs*2 0.11 TCGA-BR-6802-01 5 90074728 90074728 G A GPR98 Missense_Mutation p.R4299Q 0.12 benign(0.137) TCGA-BR-6802-01 5 92921019 92921019 A G NR2F1 Missense_Mutation p.H97R 0.17 deleterious(0) probably_damaging(0.991) TCGA-BR-6802-01 5 96341852 96341852 G A LNPEP Missense_Mutation p.V621I 0.09 tolerated(0.15) benign(0.299) TCGA-BR-6802-01 6 100062155 100062155 G A PRDM13 Silent p.P548P 0.15 TCGA-BR-6802-01 6 111695299 111695299 A - REV3L Frame_Shift_Del p.L1420Cfs*13 0.14 TCGA-BR-6802-01 6 12122709 12122709 G A HIVEP1 Missense_Mutation p.R894H 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-BR-6802-01 6 122792895 122792895 A G SERINC1 5'UTR 0.12 TCGA-BR-6802-01 6 125366443 125366443 G A RNF217 Silent p.T31T 0.08 TCGA-BR-6802-01 6 127794434 127794435 - A SOGA3 Frame_Shift_Ins p.V946Cfs*28 0.12 TCGA-BR-6802-01 6 132031982 132031982 A - CTAGE9 Frame_Shift_Del p.L59Cfs*27 0.11 TCGA-BR-6802-01 6 13486905 13486905 G A GFOD1 Missense_Mutation p.P73L 0.07 deleterious(0) probably_damaging(0.997) TCGA-BR-6802-01 6 139487805 139487805 C A HECA Missense_Mutation p.A219E 0.06 tolerated(0.6) benign(0.267) TCGA-BR-6802-01 6 144812155 144812155 G A UTRN Missense_Mutation p.D1452N 0.10 tolerated(0.06) possibly_damaging(0.69) TCGA-BR-6802-01 6 158349643 158349643 C T SNX9 Silent p.C399C 0.19 TCGA-BR-6802-01 6 160543054 160543054 G A SLC22A1 Silent p.S29S 0.15 TCGA-BR-6802-01 6 166844007 166844007 C T RPS6KA2 Silent p.S513S 0.17 TCGA-BR-6802-01 6 168281130 168281130 C A MLLT4 Missense_Mutation p.A277D 0.03 deleterious(0.01) probably_damaging(1) TCGA-BR-6802-01 6 26123922 26123923 AT - HIST1H2BC Frame_Shift_Del p.F71* 0.13 TCGA-BR-6802-01 6 30166571 30166571 G A TRIM26 Nonsense_Mutation p.R104* 0.20 TCGA-BR-6802-01 6 30653969 30653969 G A PPP1R18 5'UTR 0.44 TCGA-BR-6802-01 6 30670948 30670948 C T MDC1 Missense_Mutation p.R1933Q 0.18 deleterious(0) probably_damaging(0.979) TCGA-BR-6802-01 6 31802955 31802955 G T C6orf48 5'UTR 0.10 TCGA-BR-6802-01 6 33052994 33052994 T C HLA-DPB1 Missense_Mutation p.V211A 0.12 deleterious(0.02) possibly_damaging(0.842) TCGA-BR-6802-01 6 33283621 33283621 A G ZBTB22 Missense_Mutation p.I358T 0.18 deleterious(0) probably_damaging(0.991) TCGA-BR-6802-01 6 33411173 33411173 C T SYNGAP1 Silent p.G948G 0.15 TCGA-BR-6802-01 6 33631536 33631536 C T ITPR3 Missense_Mutation p.R343C 0.11 deleterious(0.04) probably_damaging(0.93) TCGA-BR-6802-01 6 36982747 36982747 T A FGD2 Missense_Mutation p.L321H 0.18 deleterious(0) probably_damaging(0.99) TCGA-BR-6802-01 6 42204045 42204045 C A TRERF1 Missense_Mutation p.E988D 0.13 tolerated(0.59) benign(0.217) TCGA-BR-6802-01 6 42985306 42985306 G A KLHDC3 Silent p.G68G 0.22 TCGA-BR-6802-01 6 43143662 43143663 - G SRF Frame_Shift_Ins p.L336Pfs*39 0.11 TCGA-BR-6802-01 6 45917038 45917038 A G CLIC5 Missense_Mutation p.V244A 0.13 deleterious(0) probably_damaging(0.988) TCGA-BR-6802-01 6 46107942 46107942 A - ENPP4 Frame_Shift_Del p.I210* 0.17 TCGA-BR-6802-01 6 46828548 46828548 A G GPR116 Silent p.H761H 0.08 TCGA-BR-6802-01 6 46977701 46977701 A C GPR110 Missense_Mutation p.I490M 0.13 deleterious(0) possibly_damaging(0.823) TCGA-BR-6802-01 6 54212228 54212228 A G TINAG Missense_Mutation p.Q271R 0.07 deleterious(0) possibly_damaging(0.742) TCGA-BR-6802-01 6 6266932 6266932 G A F13A1 Missense_Mutation p.R144W 0.15 deleterious(0.01) probably_damaging(0.965) TCGA-BR-6802-01 6 82936995 82936995 C T IBTK Missense_Mutation p.V190M 0.12 deleterious(0) probably_damaging(0.973) TCGA-BR-6802-01 6 87953265 87953265 G A ZNF292 Missense_Mutation p.A272T 0.30 deleterious(0) probably_damaging(0.948) TCGA-BR-6802-01 6 96651800 96651800 C A FUT9 Missense_Mutation p.L257I 0.23 tolerated(0.06) possibly_damaging(0.557) TCGA-BR-6802-01 7 100682329 100682329 T C MUC17 Silent p.S2544S 0.14 TCGA-BR-6802-01 7 102953432 102953432 G A DNAJC2 Missense_Mutation p.P585S 0.14 deleterious(0) probably_damaging(0.995) TCGA-BR-6802-01 7 107577640 107577640 C T LAMB1 Missense_Mutation p.A1282T 0.16 tolerated(0.46) benign(0.001) TCGA-BR-6802-01 7 112423832 112423832 C T TMEM168 Missense_Mutation p.R350H 0.07 deleterious(0) probably_damaging(0.998) TCGA-BR-6802-01 7 123593630 123593630 A T SPAM1 Silent p.G2G 0.20 TCGA-BR-6802-01 7 131866253 131866253 A G PLXNA4 Missense_Mutation p.S1127P 0.04 deleterious(0) possibly_damaging(0.832) TCGA-BR-6802-01 7 134346677 134346677 C T BPGM Missense_Mutation p.R140W 0.18 tolerated(0.12) benign(0.098) TCGA-BR-6802-01 7 135079001 135079001 C T CNOT4 Silent p.S432S 0.08 TCGA-BR-6802-01 7 138437555 138437555 G A ATP6V0A4 Nonsense_Mutation p.Q282* 0.14 TCGA-BR-6802-01 7 142566336 142566336 G A EPHB6 Missense_Mutation p.A709T 0.10 tolerated(1) benign(0.004) TCGA-BR-6802-01 7 148802270 148802270 G T ZNF425 Silent p.S231S 0.16 TCGA-BR-6802-01 7 149416733 149416733 C T KRBA1 Missense_Mutation p.R2W 0.13 deleterious(0) probably_damaging(0.984) TCGA-BR-6802-01 7 149547305 149547305 C T ZNF862 Missense_Mutation p.P332L 0.26 deleterious_low_confidence(0) possibly_damaging(0.628) TCGA-BR-6802-01 7 158560362 158560362 G A ESYT2 Missense_Mutation p.R351W 0.16 deleterious(0) probably_damaging(0.974) TCGA-BR-6802-01 7 20201455 20201455 A G MACC1 Missense_Mutation p.S11P 0.11 tolerated(0.3) benign(0.003) TCGA-BR-6802-01 7 26236525 26236526 - T HNRNPA2B1 Frame_Shift_Ins p.I138Nfs*2 0.14 TCGA-BR-6802-01 7 4900547 4900547 G A PAPOLB Missense_Mutation p.P298S 0.12 tolerated(0.09) probably_damaging(0.999) TCGA-BR-6802-01 7 50514060 50514060 T - FIGNL1 Frame_Shift_Del p.K309Sfs*16 0.15 TCGA-BR-6802-01 7 5752387 5752387 G A RNF216 Silent p.A647A 0.21 TCGA-BR-6802-01 7 6057478 6057478 G A AIMP2 Missense_Mutation p.A126T 0.18 tolerated(0.07) probably_damaging(0.999) TCGA-BR-6802-01 7 94056959 94056959 C T COL1A2 Silent p.G1096G 0.10 TCGA-BR-6802-01 7 98567888 98567889 - G TRRAP Frame_Shift_Ins p.E2550Gfs*93 0.12 TCGA-BR-6802-01 7 99017660 99017660 C T ATP5J2-PTCD1 Missense_Mutation p.R727Q 0.15 tolerated(0.17) benign(0.178) TCGA-BR-6802-01 8 101011627 101011627 A C RGS22 Missense_Mutation p.W938G 0.06 deleterious(0.04) probably_damaging(0.997) TCGA-BR-6802-01 8 101092539 101092539 A - RGS22 Frame_Shift_Del p.F54Lfs*3 0.14 TCGA-BR-6802-01 8 102381279 102381279 G A NACAP1 RNA 0.04 TCGA-BR-6802-01 8 104927779 104927779 A - RIMS2 Frame_Shift_Del p.G626Efs*3 0.19 TCGA-BR-6802-01 8 110587336 110587336 G A SYBU Silent p.G597G 0.09 TCGA-BR-6802-01 8 123965544 123965545 - A ZHX2 Frame_Shift_Ins p.G601Rfs*71 0.12 TCGA-BR-6802-01 8 125565501 125565501 C T MTSS1 Missense_Mutation p.G667D 0.06 deleterious(0.01) possibly_damaging(0.728) TCGA-BR-6802-01 8 139163507 139163507 A G FAM135B Silent p.L1071L 0.08 TCGA-BR-6802-01 8 142500233 142500233 G A MROH5 3'Flank 0.10 TCGA-BR-6802-01 8 144462879 144462879 G A RHPN1 Missense_Mutation p.R446H 0.25 tolerated(0.12) benign(0.014) TCGA-BR-6802-01 8 144732382 144732383 - AG ZNF623 Frame_Shift_Ins p.L117Sfs*3 0.11 TCGA-BR-6802-01 8 15519705 15519705 C A TUSC3 Missense_Mutation p.A203D 0.11 tolerated(0.1) possibly_damaging(0.864) TCGA-BR-6802-01 8 21767139 21767139 G T DOK2 Missense_Mutation p.R308S 0.10 deleterious(0.03) benign(0.345) TCGA-BR-6802-01 8 23167240 23167240 G A LOXL2 Silent p.G607G 0.08 TCGA-BR-6802-01 8 3087599 3087599 G A CSMD1 Silent p.N1436N 0.11 TCGA-BR-6802-01 8 33416240 33416240 C T RNF122 Missense_Mutation p.M25I 0.05 deleterious_low_confidence(0.01) benign(0.016) TCGA-BR-6802-01 8 37756907 37756907 G T RAB11FIP1 Missense_Mutation p.T18N 0.10 deleterious(0) probably_damaging(0.943) TCGA-BR-6802-01 8 38699879 38699879 G A TACC1 Missense_Mutation p.A679T 0.11 deleterious(0) possibly_damaging(0.868) TCGA-BR-6802-01 8 42407698 42407698 G A SMIM19 Missense_Mutation p.D91N 0.09 deleterious(0.01) benign(0.3) TCGA-BR-6802-01 8 48625354 48625354 T C SPIDR Missense_Mutation p.V703A 0.09 deleterious(0.02) benign(0.291) TCGA-BR-6802-01 8 48694762 48694762 A - PRKDC Frame_Shift_Del p.L3816* 0.12 TCGA-BR-6802-01 8 66988980 66988980 G A DNAJC5B Missense_Mutation p.A69T 0.12 tolerated(0.21) benign(0.005) TCGA-BR-6802-01 8 71071833 71071833 C T NCOA2 Missense_Mutation p.G344D 0.09 deleterious(0) probably_damaging(0.998) TCGA-BR-6802-01 8 86042248 86042248 C T LRRCC1 Missense_Mutation p.A574V 0.10 tolerated(1) benign(0) TCGA-BR-6802-01 8 88885339 88885339 T C DCAF4L2 Silent p.S287S 0.12 TCGA-BR-6802-01 8 95500956 95500956 T C KIAA1429 Missense_Mutation p.H1806R 0.10 deleterious(0) benign(0.402) TCGA-BR-6802-01 9 101552786 101552786 G A ANKS6 Silent p.G154G 0.25 TCGA-BR-6802-01 9 101748037 101748038 - A COL15A1 Frame_Shift_Ins p.P99Afs*14 0.09 TCGA-BR-6802-01 9 109687613 109687613 G A ZNF462 Missense_Mutation p.E474K 0.26 benign(0.305) TCGA-BR-6802-01 9 113550073 113550073 G A MUSK Missense_Mutation p.A628T 0.16 deleterious(0.03) probably_damaging(0.987) TCGA-BR-6802-01 9 124530798 124530798 C A DAB2IP Silent p.I567I 0.13 TCGA-BR-6802-01 9 127089652 127089652 G A NEK6 Missense_Mutation p.G218S 0.14 deleterious(0.02) probably_damaging(0.992) TCGA-BR-6802-01 9 127644063 127644063 C A GOLGA1 Missense_Mutation p.E712D 0.12 deleterious(0) probably_damaging(0.943) TCGA-BR-6802-01 9 130572387 130572387 T C FPGS Splice_Site p.X429_splice 0.20 TCGA-BR-6802-01 9 131038469 131038469 C A SWI5 Missense_Mutation p.S15R 0.17 deleterious_low_confidence(0) benign(0) TCGA-BR-6802-01 9 13125277 13125277 T - MPDZ Frame_Shift_Del p.K1582Rfs*7 0.16 TCGA-BR-6802-01 9 13143471 13143471 G A MPDZ Silent p.A1278A 0.12 TCGA-BR-6802-01 9 131708196 131708196 C - DOLK Frame_Shift_Del p.E463Rfs*15 0.14 TCGA-BR-6802-01 9 132585059 132585059 G A TOR1A Missense_Mutation p.A82V 0.12 deleterious(0.01) possibly_damaging(0.744) TCGA-BR-6802-01 9 134459791 134459791 C T RAPGEF1 Silent p.R939R 0.13 TCGA-BR-6802-01 9 135977061 135977061 G A RALGDS Missense_Mutation p.T767M 0.16 deleterious(0) unknown(0) TCGA-BR-6802-01 9 138376947 138376947 C - PPP1R26 Frame_Shift_Del p.G199Afs*18 0.09 TCGA-BR-6802-01 9 138379043 138379043 G - PPP1R26 Frame_Shift_Del p.V898Sfs*56 0.15 TCGA-BR-6802-01 9 138650317 138650317 A G KCNT1 Missense_Mutation p.I273V 0.12 tolerated(0.07) benign(0.009) TCGA-BR-6802-01 9 14805124 14805124 C T FREM1 Missense_Mutation p.A1101T 0.18 tolerated(0.3) benign(0.023) TCGA-BR-6802-01 9 18574213 18574213 T C ADAMTSL1 Silent p.G141G 0.14 TCGA-BR-6802-01 9 20874757 20874757 C T FOCAD Silent p.G756G 0.18 TCGA-BR-6802-01 9 21202157 21202157 C T IFNA7 Missense_Mutation p.R3Q 0.10 tolerated(0.12) unknown(0) TCGA-BR-6802-01 9 21227460 21227460 G A IFNA17 3'UTR 0.15 TCGA-BR-6802-01 9 32632794 32632794 A - TAF1L Frame_Shift_Del p.F928Lfs*13 0.21 TCGA-BR-6802-01 9 35382432 35382432 C T UNC13B Silent p.N829N 0.15 TCGA-BR-6802-01 9 71395740 71395740 C T FAM122A Silent p.G220G 0.13 TCGA-BR-6802-01 9 82323671 82323671 T C TLE4 Silent p.A411A 0.14 TCGA-BR-6802-01 9 90387899 90387899 G A CTSL3P RNA 0.11 TCGA-BR-6802-01 9 96859844 96859844 G T PTPDC1 Missense_Mutation p.E330D 0.07 deleterious(0) probably_damaging(0.924) TCGA-BR-6802-01 X 100274338 100274338 A G TRMT2B Missense_Mutation p.L408P 0.49 deleterious(0) probably_damaging(0.981) TCGA-BR-6802-01 X 101396155 101396155 G T TCEAL6 Missense_Mutation p.A50D 0.17 tolerated(0.8) benign(0.001) TCGA-BR-6802-01 X 135488065 135488065 T - GPR112 Frame_Shift_Del p.F2958Lfs*6 0.20 TCGA-BR-6802-01 X 135498694 135498694 G T GPR112 3'UTR 0.50 TCGA-BR-6802-01 X 15349629 15349629 C T PIGA Missense_Mutation p.A142T 0.11 deleterious(0) possibly_damaging(0.647) TCGA-BR-6802-01 X 35821242 35821242 C T MAGEB16 Missense_Mutation p.A310V 0.18 deleterious(0) unknown(0) TCGA-BR-6802-01 X 41379720 41379720 G A CASK Missense_Mutation p.L907F 0.47 deleterious(0.02) benign(0.042) TCGA-BR-6802-01 X 48564698 48564698 G T SUV39H1 Missense_Mutation p.D291Y 0.39 deleterious(0) probably_damaging(0.959) TCGA-BR-6802-01 X 51150887 51150887 C T CXorf67 Missense_Mutation p.T340M 0.26 tolerated(0.1) benign(0.017) TCGA-BR-6802-01 X 54276024 54276024 C A WNK3 Missense_Mutation p.L919F 0.08 deleterious(0.03) benign(0.08) TCGA-BR-6802-01 X 57020676 57020676 T - SPIN3 Frame_Shift_Del p.K235Nfs*21 0.15 TCGA-BR-6802-01 X 71351350 71351350 G A RGAG4 Missense_Mutation p.A14V 0.11 tolerated_low_confidence(0.06) probably_damaging(0.994) TCGA-BR-6802-01 X 71427426 71427426 C T ERCC6L Silent p.T397T 0.21 TCGA-BR-6802-01 X 72674374 72674374 C T CDX4 Missense_Mutation p.R270C 0.71 tolerated(0.22) benign(0) TCGA-BR-6802-01 X 84363384 84363384 G A SATL1 Silent p.G197G 0.21 TCGA-BR-6802-01 Y 4967616 4967616 A - PCDH11Y Frame_Shift_Del p.K667Nfs*9 0.15 TCGA-BR-6803-01 10 128851029 128851029 G T DOCK1 Silent p.A741A 0.18 TCGA-BR-6803-01 10 23409793 23409793 C A MSRB2 3'UTR 0.08 TCGA-BR-6803-01 10 29759247 29759247 G A SVIL Missense_Mutation p.T1934M 0.14 deleterious(0) probably_damaging(0.932) TCGA-BR-6803-01 11 902239 902239 C A CHID1 Missense_Mutation p.R143L 0.12 tolerated(0.21) benign(0.044) TCGA-BR-6803-01 14 76241900 76241900 G A TTLL5 Missense_Mutation p.R737Q 0.05 deleterious(0.03) probably_damaging(0.998) TCGA-BR-6803-01 16 68844172 68844172 G T CDH1 Missense_Mutation p.D254Y 0.27 deleterious(0) probably_damaging(1) TCGA-BR-6803-01 17 26905534 26905534 C T SPAG5 Missense_Mutation p.E1071K 0.14 deleterious(0) probably_damaging(0.999) TCGA-BR-6803-01 17 7578542 7578542 G A TP53 Missense_Mutation p.L130F 0.09 deleterious(0) probably_damaging(1) TCGA-BR-6803-01 17 8656508 8656508 G T SPDYE4 Missense_Mutation p.A221D 0.07 deleterious(0) probably_damaging(0.975) TCGA-BR-6803-01 21 16339654 16339654 G A NRIP1 Missense_Mutation p.T287M 0.14 deleterious(0) possibly_damaging(0.861) TCGA-BR-6803-01 2 113955401 113955401 G A PSD4 Silent p.S845S 0.15 TCGA-BR-6803-01 2 175304637 175304637 G C GPR155 Silent p.V767V 0.09 TCGA-BR-6803-01 2 190426751 190426751 G T SLC40A1 Silent p.L523L 0.10 TCGA-BR-6803-01 3 32032150 32032150 C T ZNF860 Missense_Mutation p.R527C 0.11 tolerated(0.32) benign(0.004) TCGA-BR-6803-01 4 153831422 153831422 A G ARFIP1 3'UTR 0.29 TCGA-BR-6803-01 4 3447797 3447797 G T HGFAC Silent p.P377P 0.17 TCGA-BR-6803-01 5 140773225 140773225 G A PCDHGA8 Missense_Mutation p.R282Q 0.13 tolerated_low_confidence(0.16) benign(0.05) TCGA-BR-6803-01 9 4713048 4713048 A C AK3 Missense_Mutation p.I204M 0.14 deleterious(0.01) possibly_damaging(0.888) TCGA-BR-6803-01 X 30269600 30269600 G T MAGEB1 Silent p.T330T 0.13 TCGA-BR-6852-01 10 100185471 100185471 T A HPS1 Missense_Mutation p.S388C 0.18 deleterious(0.04) benign(0.059) TCGA-BR-6852-01 10 102743183 102743183 C T SEMA4G Silent p.S609S 0.20 TCGA-BR-6852-01 10 102748165 102748165 G A C10orf2 Silent p.G66G 0.17 TCGA-BR-6852-01 10 102748553 102748553 C T C10orf2 Nonsense_Mutation p.R196* 0.05 TCGA-BR-6852-01 10 102849604 102849604 T G TLX1NB Missense_Mutation p.H20P 0.11 tolerated_low_confidence(0.19) benign(0.034) TCGA-BR-6852-01 10 103360573 103360573 G A DPCD Missense_Mutation p.G75E 0.11 tolerated(0.97) benign(0.049) TCGA-BR-6852-01 10 104436643 104436643 T C ARL3 3'UTR 0.15 TCGA-BR-6852-01 10 104679834 104679834 G A CNNM2 Missense_Mutation p.A533T 0.20 tolerated(0.11) benign(0.066) TCGA-BR-6852-01 10 105761303 105761303 T C SLK Silent p.D322D 0.26 TCGA-BR-6852-01 10 106075805 106075805 G A ITPRIP Missense_Mutation p.A2V 0.22 tolerated(0.16) benign(0.169) TCGA-BR-6852-01 10 112647471 112647471 G A PDCD4 Missense_Mutation p.V202M 0.16 tolerated(0.14) benign(0.044) TCGA-BR-6852-01 10 112839198 112839198 G T ADRA2A 3'UTR 0.12 TCGA-BR-6852-01 10 115336940 115336940 C T HABP2 Silent p.G121G 0.10 TCGA-BR-6852-01 10 115489357 115489357 T - CASP7 3'UTR 0.16 TCGA-BR-6852-01 10 116930893 116930893 A - ATRNL1 Frame_Shift_Del p.T399Lfs*30 0.12 TCGA-BR-6852-01 10 118306822 118306822 C T PNLIP Silent p.Y21Y 0.17 TCGA-BR-6852-01 10 124249045 124249045 G A HTRA1 Missense_Mutation p.R227Q 0.24 tolerated(0.46) possibly_damaging(0.535) TCGA-BR-6852-01 10 126311784 126311784 C A FAM53B 3'UTR 0.16 TCGA-BR-6852-01 10 127477552 127477552 G A UROS Missense_Mutation p.T228M 0.15 deleterious(0) probably_damaging(1) TCGA-BR-6852-01 10 129902596 129902596 C T MKI67 Missense_Mutation p.R2503Q 0.17 tolerated(0.69) benign(0.153) TCGA-BR-6852-01 10 131958325 131958325 T - GLRX3 Frame_Shift_Del p.F91Sfs*10 0.14 TCGA-BR-6852-01 10 16526378 16526378 T C PTER 5'UTR 0.18 TCGA-BR-6852-01 10 22048374 22048374 G A DNAJC1 Missense_Mutation p.R441W 0.21 deleterious(0.02) benign(0.035) TCGA-BR-6852-01 10 27324123 27324123 C T ANKRD26 Missense_Mutation p.A1086T 0.04 tolerated(0.23) possibly_damaging(0.878) TCGA-BR-6852-01 10 27454412 27454412 C A MASTL Missense_Mutation p.P252H 0.18 deleterious(0.01) benign(0.043) TCGA-BR-6852-01 10 31134032 31134032 G A ZNF438 Missense_Mutation p.A782V 0.21 tolerated(0.13) benign(0.209) TCGA-BR-6852-01 10 49446167 49446167 C T FRMPD2 Splice_Site p.X263_splice 0.16 TCGA-BR-6852-01 10 50530930 50530930 A - C10orf71 Frame_Shift_Del p.T115Pfs*19 0.16 TCGA-BR-6852-01 10 5141002 5141002 G T AKR1C3 Missense_Mutation p.E126D 0.18 tolerated(0.39) benign(0.001) TCGA-BR-6852-01 10 53227559 53227559 T C PRKG1 Silent p.A185A 0.11 TCGA-BR-6852-01 10 54074759 54074759 G A DKK1 Missense_Mutation p.G107D 0.14 deleterious(0.05) benign(0.053) TCGA-BR-6852-01 10 55569132 55569132 T - PCDH15 Frame_Shift_Del p.R494Efs*23 0.16 TCGA-BR-6852-01 10 5800957 5800957 T C FAM208B Splice_Site p.X2331_splice 0.17 TCGA-BR-6852-01 10 5995102 5995102 T G IL15RA Missense_Mutation p.S254R 0.11 tolerated(0.07) possibly_damaging(0.81) TCGA-BR-6852-01 10 60553279 60553279 G T BICC1 Missense_Mutation p.K361N 0.13 deleterious(0.01) probably_damaging(0.958) TCGA-BR-6852-01 10 61552376 61552376 A - CCDC6 3'UTR 0.17 TCGA-BR-6852-01 10 61815606 61815606 T C ANK3 Missense_Mutation p.H4292R 0.04 benign(0) TCGA-BR-6852-01 10 62023723 62023723 G A ANK3 Missense_Mutation p.S190L 0.12 probably_damaging(0.955) TCGA-BR-6852-01 10 63170171 63170171 T C TMEM26 Missense_Mutation p.Q339R 0.15 tolerated(0.1) benign(0) TCGA-BR-6852-01 10 64136602 64136602 C T ZNF365 Missense_Mutation p.A217V 0.17 tolerated(0.35) benign(0.079) TCGA-BR-6852-01 10 70056045 70056045 T C PBLD Silent p.A87A 0.32 TCGA-BR-6852-01 10 70192163 70192163 T - DNA2 Frame_Shift_Del p.N670Tfs*11 0.16 TCGA-BR-6852-01 10 71243561 71243561 G A TSPAN15 Missense_Mutation p.V71I 0.29 tolerated(0.86) benign(0.006) TCGA-BR-6852-01 10 71902509 71902509 C T TYSND1 Silent p.T466T 0.09 TCGA-BR-6852-01 10 73116008 73116008 T C SLC29A3 Intron 0.05 TCGA-BR-6852-01 10 7820854 7820854 T - KIN Frame_Shift_Del p.T169Lfs*9 0.20 TCGA-BR-6852-01 10 79741970 79741970 G A POLR3A Missense_Mutation p.A1234V 0.18 tolerated(0.24) benign(0.189) TCGA-BR-6852-01 10 84744984 84744984 A G NRG3 Missense_Mutation p.S572G 0.16 tolerated(0.38) benign(0.297) TCGA-BR-6852-01 10 88259864 88259864 C T WAPAL Missense_Mutation p.R379H 0.18 deleterious_low_confidence(0) possibly_damaging(0.796) TCGA-BR-6852-01 10 909765 909765 C T LARP4B Silent p.P116P 0.21 TCGA-BR-6852-01 10 93999718 93999718 G T CPEB3 Silent p.V130V 0.12 TCGA-BR-6852-01 10 95660776 95660776 C T SLC35G1 Silent p.S209S 0.16 TCGA-BR-6852-01 10 97101123 97101123 T C SORBS1 Silent p.P863P 0.20 TCGA-BR-6852-01 10 99361742 99361742 G A HOGA1 Missense_Mutation p.A277T 0.23 tolerated(1) benign(0.002) TCGA-BR-6852-01 11 100909916 100909916 T G PGR Missense_Mutation p.E911D 0.19 deleterious(0) possibly_damaging(0.898) TCGA-BR-6852-01 11 101375456 101375456 G A TRPC6 Nonsense_Mutation p.R82* 0.19 TCGA-BR-6852-01 11 101762047 101762047 A G ANGPTL5 Missense_Mutation p.M377T 0.15 deleterious(0) possibly_damaging(0.745) TCGA-BR-6852-01 11 111594498 111594498 G A SIK2 Missense_Mutation p.R809Q 0.18 tolerated_low_confidence(0.86) benign(0) TCGA-BR-6852-01 11 111866267 111866267 G A DIXDC1 Silent p.T555T 0.16 TCGA-BR-6852-01 11 113857293 113857293 C A HTR3A Missense_Mutation p.S259R 0.08 deleterious(0) probably_damaging(0.998) TCGA-BR-6852-01 11 117280458 117280458 G A CEP164 Silent p.P1291P 0.19 TCGA-BR-6852-01 11 118373724 118373724 C A KMT2A Missense_Mutation p.L2373I 0.19 possibly_damaging(0.658) TCGA-BR-6852-01 11 118919524 118919524 G A HYOU1 Silent p.P689P 0.23 TCGA-BR-6852-01 11 118983195 118983195 A G C2CD2L Missense_Mutation p.E363G 0.12 deleterious(0.03) benign(0.319) TCGA-BR-6852-01 11 119535676 119535676 G A PVRL1 Silent p.G445G 0.16 TCGA-BR-6852-01 11 119549297 119549297 G A PVRL1 Silent p.G86G 0.21 TCGA-BR-6852-01 11 12284162 12284162 G T MICAL2 Intron 0.10 TCGA-BR-6852-01 11 123676666 123676666 G A OR6M1 Missense_Mutation p.T131M 0.20 tolerated(0.07) benign(0.009) TCGA-BR-6852-01 11 124310482 124310482 G A OR8B8 Missense_Mutation p.T167I 0.20 tolerated_low_confidence(0.06) benign(0.046) TCGA-BR-6852-01 11 126136758 126136758 C T SRPR Missense_Mutation p.V196M 0.18 tolerated(0.12) benign(0.002) TCGA-BR-6852-01 11 126146096 126146096 C A FOXRED1 Missense_Mutation p.P318H 0.19 deleterious(0) probably_damaging(1) TCGA-BR-6852-01 11 126314938 126314938 G A KIRREL3 Silent p.Y396Y 0.13 TCGA-BR-6852-01 11 129739602 129739602 G A NFRKB Silent p.T1131T 0.18 TCGA-BR-6852-01 11 17519712 17519712 G A USH1C Silent p.G829G 0.15 TCGA-BR-6852-01 11 18108472 18108473 - A SAAL1 Frame_Shift_Ins p.S328Ffs*12 0.22 TCGA-BR-6852-01 11 18159640 18159640 C T MRGPRX3 Silent p.D297D 0.22 TCGA-BR-6852-01 11 18955384 18955384 C T MRGPRX1 Silent p.S316S 0.17 TCGA-BR-6852-01 11 18956154 18956154 C T MRGPRX1 Missense_Mutation p.A60T 0.20 tolerated(0.09) benign(0.072) TCGA-BR-6852-01 11 22647044 22647044 C - FANCF Frame_Shift_Del p.D105Mfs*58 0.11 TCGA-BR-6852-01 11 308173 308173 C T IFITM2 5'UTR 0.13 TCGA-BR-6852-01 11 34218969 34218969 C T ABTB2 Missense_Mutation p.A383T 0.13 deleterious(0) benign(0.427) TCGA-BR-6852-01 11 36459025 36459025 A G PRR5L Missense_Mutation p.Q148R 0.18 deleterious(0) possibly_damaging(0.688) TCGA-BR-6852-01 11 4144429 4144429 C T RRM1 Missense_Mutation p.R379C 0.07 deleterious_low_confidence(0) probably_damaging(0.91) TCGA-BR-6852-01 11 418560 418560 G A ANO9 Silent p.A720A 0.15 TCGA-BR-6852-01 11 4389407 4389408 GC T OR52B4 Frame_Shift_Del p.A40Tfs*45 0.14 TCGA-BR-6852-01 11 45672102 45672102 C T CHST1 Silent p.L124L 0.14 TCGA-BR-6852-01 11 46406884 46406884 G T CHRM4 Silent p.A408A 0.27 TCGA-BR-6852-01 11 47399893 47399893 C T SPI1 Silent p.A4A 0.10 TCGA-BR-6852-01 11 494914 494914 G A RNH1 Missense_Mutation p.R423W 0.32 deleterious(0) possibly_damaging(0.679) TCGA-BR-6852-01 11 498841 498841 C A RNH1 Missense_Mutation p.S236I 0.11 deleterious(0) benign(0.025) TCGA-BR-6852-01 11 55735092 55735092 A G OR10AG1 Missense_Mutation p.L283P 0.22 deleterious(0) probably_damaging(0.997) TCGA-BR-6852-01 11 5632556 5632556 G A TRIM6 Missense_Mutation p.R512H 0.13 deleterious(0) possibly_damaging(0.781) TCGA-BR-6852-01 11 57099223 57099223 C T SSRP1 Missense_Mutation p.R381H 0.11 deleterious(0.02) possibly_damaging(0.638) TCGA-BR-6852-01 11 57100495 57100495 A G SSRP1 Missense_Mutation p.S159P 0.19 deleterious(0.01) probably_damaging(0.986) TCGA-BR-6852-01 11 5862873 5862873 G T OR52E6 Silent p.G85G 0.14 TCGA-BR-6852-01 11 5862874 5862874 C T OR52E6 Missense_Mutation p.G85D 0.14 deleterious(0.02) benign(0.037) TCGA-BR-6852-01 11 59622240 59622240 C T TCN1 Missense_Mutation p.V336I 0.15 tolerated(0.09) possibly_damaging(0.536) TCGA-BR-6852-01 11 60269478 60269478 C G MS4A12 Missense_Mutation p.S146C 0.19 tolerated(0.08) benign(0.414) TCGA-BR-6852-01 11 61032017 61032017 G A VWCE Silent p.C724C 0.09 TCGA-BR-6852-01 11 61097046 61097046 C T DDB1 Missense_Mutation p.G113D 0.31 deleterious(0.02) benign(0.195) TCGA-BR-6852-01 11 61488196 61488196 G A DAGLA Silent p.P47P 0.17 TCGA-BR-6852-01 11 61583913 61583913 C A FADS1 Intron 0.22 TCGA-BR-6852-01 11 61897808 61897808 C A INCENP Missense_Mutation p.P270Q 0.29 deleterious(0.04) unknown(0) TCGA-BR-6852-01 11 6238994 6238994 C - FAM160A2 Frame_Shift_Del p.E622Kfs*54 0.32 TCGA-BR-6852-01 11 6239808 6239808 C T FAM160A2 Missense_Mutation p.G486E 0.16 tolerated(0.18) benign(0.064) TCGA-BR-6852-01 11 62554065 62554065 G A TAF6L Missense_Mutation p.C389Y 0.17 tolerated(1) benign(0) TCGA-BR-6852-01 11 64453271 64453271 C T NRXN2 Silent p.S333S 0.23 TCGA-BR-6852-01 11 64575097 64575097 G A MEN1 Missense_Mutation p.A242V 0.06 deleterious(0) probably_damaging(0.996) TCGA-BR-6852-01 11 64676743 64676743 T G ATG2A Missense_Mutation p.Q735P 0.13 deleterious(0) benign(0.446) TCGA-BR-6852-01 11 66033586 66033586 G A KLC2 Missense_Mutation p.R542H 0.17 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-BR-6852-01 11 66102472 66102472 G - RIN1 Frame_Shift_Del p.V267Sfs*84 0.15 TCGA-BR-6852-01 11 66359936 66359936 C A CCDC87 Missense_Mutation p.R184M 0.25 deleterious(0.01) benign(0.125) TCGA-BR-6852-01 11 66411194 66411194 G A RBM14-RBM4 Missense_Mutation p.R204Q 0.18 tolerated(0.09) unknown(0) TCGA-BR-6852-01 11 6644914 6644914 G - DCHS1 Frame_Shift_Del p.L2665Wfs*12 0.15 TCGA-BR-6852-01 11 67177175 67177175 C - TBC1D10C Frame_Shift_Del p.R433Gfs*121 0.23 TCGA-BR-6852-01 11 67821508 67821508 C T CHKA Missense_Mutation p.A441T 0.14 deleterious(0) probably_damaging(0.963) TCGA-BR-6852-01 11 68579983 68579983 C - CPT1A Frame_Shift_Del p.G68Afs*2 0.12 TCGA-BR-6852-01 11 6898314 6898314 G A OR10A4 Missense_Mutation p.A146T 0.16 tolerated(0.06) benign(0.248) TCGA-BR-6852-01 11 7021712 7021712 A C ZNF214 Missense_Mutation p.L401R 0.18 deleterious(0) probably_damaging(1) TCGA-BR-6852-01 11 7022691 7022691 C T ZNF214 Missense_Mutation p.A75T 0.03 tolerated(0.9) benign(0) TCGA-BR-6852-01 11 7111338 7111338 T C RBMXL2 Silent p.S329S 0.07 TCGA-BR-6852-01 11 72553749 72553749 G A FCHSD2 Missense_Mutation p.R615C 0.13 deleterious(0) possibly_damaging(0.806) TCGA-BR-6852-01 11 73106270 73106270 G T RELT Silent p.L395L 0.33 TCGA-BR-6852-01 11 74562191 74562191 C T XRRA1 Missense_Mutation p.R433Q 0.17 deleterious(0) probably_damaging(0.922) TCGA-BR-6852-01 11 74716692 74716692 G A NEU3 Missense_Mutation p.V181I 0.20 deleterious(0.05) possibly_damaging(0.705) TCGA-BR-6852-01 11 77383228 77383228 G A RSF1 Nonsense_Mutation p.R1204* 0.14 TCGA-BR-6852-01 11 83691553 83691553 A G DLG2 Missense_Mutation p.L351P 0.17 deleterious(0) probably_damaging(0.998) TCGA-BR-6852-01 11 84028016 84028016 C T DLG2 Intron 0.16 TCGA-BR-6852-01 11 85593704 85593704 A - CCDC83 Frame_Shift_Del p.N112Tfs*2 0.20 TCGA-BR-6852-01 11 88583270 88583270 C A GRM5 Missense_Mutation p.G239W 0.17 deleterious(0) probably_damaging(1) TCGA-BR-6852-01 11 89896482 89896482 G A NAALAD2 Silent p.R360R 0.12 TCGA-BR-6852-01 11 92564790 92564790 A G FAT3 Missense_Mutation p.I3162V 0.12 benign(0.002) TCGA-BR-6852-01 11 94328536 94328536 T C PIWIL4 Silent p.R404R 0.10 TCGA-BR-6852-01 11 9451349 9451349 A G IPO7 Missense_Mutation p.T574A 0.10 tolerated(1) benign(0.003) TCGA-BR-6852-01 12 100444003 100444003 T C UHRF1BP1L Missense_Mutation p.T1221A 0.13 tolerated(0.36) benign(0.044) TCGA-BR-6852-01 12 104089412 104089412 C T STAB2 Missense_Mutation p.R1154W 0.15 deleterious(0) probably_damaging(1) TCGA-BR-6852-01 12 104149134 104149134 C A STAB2 Missense_Mutation p.P2257T 0.17 deleterious(0) probably_damaging(0.93) TCGA-BR-6852-01 12 108011162 108011162 C - BTBD11 Frame_Shift_Del p.Q729Rfs*4 0.15 TCGA-BR-6852-01 12 108620779 108620779 G A WSCD2 Missense_Mutation p.A273T 0.19 deleterious(0) possibly_damaging(0.661) TCGA-BR-6852-01 12 108634185 108634185 C T WSCD2 Silent p.S403S 0.11 TCGA-BR-6852-01 12 109577798 109577798 G - ACACB Frame_Shift_Del p.A198Pfs*8 0.09 TCGA-BR-6852-01 12 113515234 113515234 A G DTX1 Missense_Mutation p.M89V 0.17 deleterious(0) benign(0.001) TCGA-BR-6852-01 12 114841708 114841708 C T TBX5 5'UTR 0.13 TCGA-BR-6852-01 12 118198971 118198971 C T KSR2 Silent p.P277P 0.04 TCGA-BR-6852-01 12 118481123 118481123 C - WSB2 Frame_Shift_Del p.G81Afs*67 0.20 TCGA-BR-6852-01 12 120966756 120966758 CTC - COQ5 In_Frame_Del p.E63del 0.16 TCGA-BR-6852-01 12 124311423 124311423 A - DNAH10 Frame_Shift_Del p.N1340Tfs*4 0.12 TCGA-BR-6852-01 12 124821593 124821593 G - NCOR2 Frame_Shift_Del p.R1941Gfs*41 0.29 TCGA-BR-6852-01 12 129559129 129559129 T G TMEM132D Missense_Mutation p.K864T 0.15 tolerated(0.31) benign(0.026) TCGA-BR-6852-01 12 132401007 132401007 G T ULK1 Missense_Mutation p.R648L 0.14 deleterious(0.01) probably_damaging(0.937) TCGA-BR-6852-01 12 132502083 132502083 T C EP400 Silent p.T1309T 0.14 TCGA-BR-6852-01 12 133294630 133294630 G A PGAM5 Missense_Mutation p.A215T 0.17 deleterious(0) probably_damaging(0.924) TCGA-BR-6852-01 12 133313524 133313524 C T ANKLE2 Silent p.P516P 0.08 TCGA-BR-6852-01 12 14796578 14796578 G A GUCY2C Silent p.C620C 0.17 TCGA-BR-6852-01 12 15262151 15262151 G A RERG Nonsense_Mutation p.R165* 0.18 TCGA-BR-6852-01 12 21661406 21661406 T - GOLT1B Frame_Shift_Del p.L72Wfs*6 0.12 TCGA-BR-6852-01 12 22408252 22408252 G A ST8SIA1 Silent p.G151G 0.07 TCGA-BR-6852-01 12 28123021 28123021 G C PTHLH 5'UTR 0.25 TCGA-BR-6852-01 12 40158332 40158332 T A SLC2A13 Silent p.G550G 0.18 TCGA-BR-6852-01 12 40631824 40631824 T G LRRK2 Missense_Mutation p.F164V 0.07 tolerated(0.81) benign(0.005) TCGA-BR-6852-01 12 43770328 43770328 G A ADAMTS20 Silent p.D1708D 0.08 TCGA-BR-6852-01 12 45004675 45004675 C T NELL2 Missense_Mutation p.C558Y 0.12 deleterious(0) probably_damaging(0.998) TCGA-BR-6852-01 12 4554633 4554633 A G FGF6 Missense_Mutation p.V35A 0.22 tolerated(0.45) benign(0.002) TCGA-BR-6852-01 12 46245449 46245449 T - ARID2 Frame_Shift_Del p.F1182Lfs*6 0.09 TCGA-BR-6852-01 12 4919970 4919970 G - KCNA6 Frame_Shift_Del p.G256Afs*41 0.16 TCGA-BR-6852-01 12 4920241 4920241 G A KCNA6 Missense_Mutation p.R345H 0.18 deleterious(0) probably_damaging(0.999) TCGA-BR-6852-01 12 50571305 50571305 C T LIMA1 Missense_Mutation p.V609M 0.05 tolerated(0.15) benign(0.092) TCGA-BR-6852-01 12 52827889 52827889 C - KRT75 Frame_Shift_Del p.G67Vfs*65 0.19 TCGA-BR-6852-01 12 53012094 53012094 C T KRT73 Missense_Mutation p.G72E 0.15 deleterious(0) benign(0.439) TCGA-BR-6852-01 12 53298464 53298466 TTG - KRT8 In_Frame_Del p.N128del 0.20 TCGA-BR-6852-01 12 53451888 53451888 T C TENC1 Splice_Site p.X375_splice 0.21 TCGA-BR-6852-01 12 53515103 53515103 C T SOAT2 Missense_Mutation p.T385M 0.17 deleterious(0) probably_damaging(0.978) TCGA-BR-6852-01 12 53722074 53722075 - G SP7 Frame_Shift_Ins p.P385Sfs*40 0.29 TCGA-BR-6852-01 12 53824050 53824050 G - AMHR2 Frame_Shift_Del p.W470Cfs*11 0.10 TCGA-BR-6852-01 12 54765373 54765373 G A ZNF385A Missense_Mutation p.P183L 0.21 deleterious(0.02) benign(0.088) TCGA-BR-6852-01 12 55360194 55360194 C T TESPA1 Missense_Mutation p.A109T 0.13 tolerated(0.91) benign(0.034) TCGA-BR-6852-01 12 55945174 55945174 C G OR6C4 Missense_Mutation p.T55S 0.17 deleterious_low_confidence(0.03) benign(0.084) TCGA-BR-6852-01 12 55945453 55945454 - G OR6C4 Frame_Shift_Ins p.F151Ifs*28 0.18 TCGA-BR-6852-01 12 56082688 56082688 G T ITGA7 Missense_Mutation p.S970R 0.22 deleterious(0) possibly_damaging(0.569) TCGA-BR-6852-01 12 57389029 57389029 G T GPR182 Silent p.S12S 0.16 TCGA-BR-6852-01 12 62926342 62926342 G T MON2 Nonsense_Mutation p.E509* 0.22 TCGA-BR-6852-01 12 63541343 63541343 A - AVPR1A Frame_Shift_Del p.F351Lfs*19 0.12 TCGA-BR-6852-01 12 6422807 6422807 C T PLEKHG6 Nonsense_Mutation p.R51* 0.13 TCGA-BR-6852-01 12 6435695 6435695 C A PLEKHG6 Silent p.P542P 0.13 TCGA-BR-6852-01 12 6450990 6450990 C A TNFRSF1A 5'UTR 0.14 TCGA-BR-6852-01 12 6637928 6637928 A G NCAPD2 Missense_Mutation p.K1128R 0.19 deleterious(0.02) possibly_damaging(0.766) TCGA-BR-6852-01 12 66704208 66704208 A - HELB Frame_Shift_Del p.A503Pfs*24 0.11 TCGA-BR-6852-01 12 67696193 67696193 G T CAND1 Missense_Mutation p.R364M 0.14 deleterious(0) probably_damaging(0.982) TCGA-BR-6852-01 12 67700125 67700125 C T CAND1 Missense_Mutation p.P893S 0.17 deleterious(0) probably_damaging(1) TCGA-BR-6852-01 12 6781678 6781678 G A ZNF384 Missense_Mutation p.T311M 0.15 deleterious(0) probably_damaging(0.938) TCGA-BR-6852-01 12 7361095 7361095 G A PEX5 Silent p.A423A 0.16 TCGA-BR-6852-01 12 80633160 80633160 C T OTOGL Silent p.S322S 0.16 TCGA-BR-6852-01 12 80761504 80761504 A - OTOGL Frame_Shift_Del p.K2158Nfs*40 0.24 TCGA-BR-6852-01 12 85445956 85445956 A G LRRIQ1 Missense_Mutation p.Q227R 0.23 deleterious(0.01) possibly_damaging(0.717) TCGA-BR-6852-01 12 93213103 93213103 T - EEA1 Frame_Shift_Del p.N570Tfs*8 0.16 TCGA-BR-6852-01 12 98938068 98938068 C T TMPO Missense_Mutation p.P242S 0.10 tolerated(0.07) benign(0.009) TCGA-BR-6852-01 13 100181813 100181814 - A TM9SF2 Frame_Shift_Ins p.S145Kfs*14 0.22 TCGA-BR-6852-01 13 109707413 109707413 C T MYO16 Missense_Mutation p.T1001I 0.14 deleterious(0.03) possibly_damaging(0.756) TCGA-BR-6852-01 13 110804777 110804777 G A COL4A1 Missense_Mutation p.A1611V 0.25 unknown(0) TCGA-BR-6852-01 13 111329449 111329449 C T CARS2 Silent p.A219A 0.19 TCGA-BR-6852-01 13 113729379 113729379 C T MCF2L Missense_Mutation p.A395V 0.15 deleterious(0) probably_damaging(0.987) TCGA-BR-6852-01 13 113748914 113748914 G A MCF2L Missense_Mutation p.A1014T 0.21 tolerated(0.56) possibly_damaging(0.819) TCGA-BR-6852-01 13 113768258 113768258 C T F7 Silent p.G138G 0.07 TCGA-BR-6852-01 13 114203860 114203860 G T TMCO3 3'UTR 0.17 TCGA-BR-6852-01 13 115048366 115048366 C T UPF3A Silent p.D123D 0.18 TCGA-BR-6852-01 13 21006389 21006389 G A CRYL1 Missense_Mutation p.P162L 0.18 deleterious_low_confidence(0) probably_damaging(0.957) TCGA-BR-6852-01 13 21562308 21562308 G A LATS2 Silent p.C537C 0.27 TCGA-BR-6852-01 13 22246092 22246092 A G FGF9 Missense_Mutation p.Q14R 0.15 tolerated(0.53) benign(0.015) TCGA-BR-6852-01 13 23907766 23907766 T G SACS Missense_Mutation p.S3417R 0.18 probably_damaging(0.99) TCGA-BR-6852-01 13 23911305 23911305 T C SACS Missense_Mutation p.E2237G 0.19 benign(0.424) TCGA-BR-6852-01 13 24515468 24515468 T - ANKRD20A19P RNA 0.11 TCGA-BR-6852-01 13 25009030 25009030 G A PARP4 Missense_Mutation p.P1417S 0.24 tolerated(0.71) benign(0.002) TCGA-BR-6852-01 13 25399909 25399909 C T RNF17 Silent p.I748I 0.15 TCGA-BR-6852-01 13 25484117 25484117 G A CENPJ Missense_Mutation p.P226S 0.16 tolerated(0.81) benign(0.003) TCGA-BR-6852-01 13 28240143 28240143 C T POLR1D 3'UTR 0.12 TCGA-BR-6852-01 13 32913837 32913837 A - BRCA2 Frame_Shift_Del p.N1784Tfs*7 0.08 TCGA-BR-6852-01 13 32931894 32931894 G A BRCA2 Missense_Mutation p.V2545I 0.19 tolerated(0.18) benign(0.098) TCGA-BR-6852-01 13 34404030 34404030 G A RFC3 Missense_Mutation p.R150K 0.16 deleterious(0.01) possibly_damaging(0.85) TCGA-BR-6852-01 13 35923259 35923259 C T NBEA Missense_Mutation p.A1973V 0.22 deleterious(0.01) benign(0.309) TCGA-BR-6852-01 13 37012857 37012857 A T CCNA1 Missense_Mutation p.D249V 0.20 deleterious(0) probably_damaging(1) TCGA-BR-6852-01 13 38210932 38210932 G A TRPC4 3'UTR 0.30 TCGA-BR-6852-01 13 38357483 38357483 G A TRPC4 5'UTR 0.21 TCGA-BR-6852-01 13 39262365 39262365 G T FREM2 Missense_Mutation p.S295I 0.14 deleterious_low_confidence(0.05) benign(0.424) TCGA-BR-6852-01 13 39264188 39264188 G T FREM2 Missense_Mutation p.A903S 0.13 tolerated(0.41) benign(0.002) TCGA-BR-6852-01 13 42149928 42149928 A G VWA8 Missense_Mutation p.V1773A 0.18 deleterious(0) possibly_damaging(0.898) TCGA-BR-6852-01 13 43652796 43652796 C T DNAJC15 Nonsense_Mutation p.R95* 0.15 TCGA-BR-6852-01 13 46357608 46357608 C A SIAH3 Silent p.S240S 0.15 TCGA-BR-6852-01 13 46616336 46616337 - G ZC3H13 Frame_Shift_Ins p.Q101Pfs*13 0.17 TCGA-BR-6852-01 13 49084818 49084818 A G RCBTB2 Silent p.T291T 0.11 TCGA-BR-6852-01 13 52951775 52951775 G T THSD1 Missense_Mutation p.P777H 0.15 deleterious(0.02) possibly_damaging(0.687) TCGA-BR-6852-01 13 53216586 53216586 C T HNRNPA1L2 5'UTR 0.20 TCGA-BR-6852-01 13 66878841 66878841 C T PCDH9 Silent p.K1220K 0.08 TCGA-BR-6852-01 13 67799528 67799528 C T PCDH9 Intron 0.07 TCGA-BR-6852-01 13 78178491 78178491 A - SCEL Frame_Shift_Del p.D369Tfs*28 0.12 TCGA-BR-6852-01 13 79191043 79191043 T C RNF219 Missense_Mutation p.S285G 0.13 tolerated(0.1) benign(0) TCGA-BR-6852-01 13 84453981 84453981 G A SLITRK1 Silent p.S554S 0.24 TCGA-BR-6852-01 13 84455508 84455509 - T SLITRK1 Frame_Shift_Ins p.F47Lfs*30 0.14 TCGA-BR-6852-01 13 93879576 93879576 C T GPC6 5'UTR 0.22 TCGA-BR-6852-01 13 95735432 95735432 A - ABCC4 Frame_Shift_Del p.L883Wfs*7 0.13 TCGA-BR-6852-01 13 96443251 96443251 C T DNAJC3 Silent p.G494G 0.11 TCGA-BR-6852-01 14 104135937 104135937 T G KLC1 Splice_Site p.X295_splice 0.15 TCGA-BR-6852-01 14 105246551 105246551 C T AKT1 Missense_Mutation p.E17K 0.13 deleterious(0) probably_damaging(0.999) TCGA-BR-6852-01 14 105639318 105639318 T C NUDT14 3'UTR 0.12 TCGA-BR-6852-01 14 106173776 106173776 C T IGHA1 Nonsense_Mutation p.W264* 0.16 TCGA-BR-6852-01 14 106174708 106174708 C T IGHA1 Missense_Mutation p.V99M 0.10 deleterious(0.03) possibly_damaging(0.699) TCGA-BR-6852-01 14 106641590 106641590 G A IGHV1-18 Silent p.D108D 0.20 TCGA-BR-6852-01 14 20528881 20528881 A - OR4L1 Frame_Shift_Del p.K228Nfs*55 0.18 TCGA-BR-6852-01 14 21813344 21813344 C A RPGRIP1 Missense_Mutation p.P1202H 0.19 deleterious(0.01) probably_damaging(0.954) TCGA-BR-6852-01 14 21876666 21876666 C T CHD8 Silent p.Q845Q 0.20 TCGA-BR-6852-01 14 21928474 21928474 C T RAB2B 3'UTR 0.06 TCGA-BR-6852-01 14 22891861 22891861 G T TRDV2 Missense_Mutation p.R58M 0.21 deleterious(0) probably_damaging(0.989) TCGA-BR-6852-01 14 23374320 23374320 T C RBM23 Missense_Mutation p.I237V 0.20 tolerated(0.24) benign(0) TCGA-BR-6852-01 14 23416890 23416890 C T HAUS4 Silent p.R253R 0.14 TCGA-BR-6852-01 14 23868196 23868196 G T MYH6 Silent p.A544A 0.16 TCGA-BR-6852-01 14 23897852 23897852 T C MYH7 Missense_Mutation p.N479D 0.21 deleterious(0) probably_damaging(0.957) TCGA-BR-6852-01 14 24707977 24707977 C T GMPR2 Missense_Mutation p.A365V 0.13 deleterious_low_confidence(0.01) benign(0.152) TCGA-BR-6852-01 14 24774855 24774855 C T CIDEB Missense_Mutation p.R215H 0.16 tolerated(0.07) benign(0.005) TCGA-BR-6852-01 14 24897594 24897594 G A CBLN3 Silent p.G106G 0.08 TCGA-BR-6852-01 14 33293172 33293172 C T AKAP6 Silent p.A2051A 0.13 TCGA-BR-6852-01 14 33293952 33293952 A C AKAP6 Missense_Mutation p.E2311D 0.16 deleterious_low_confidence(0.03) benign(0.034) TCGA-BR-6852-01 14 35593160 35593160 A - KIAA0391 Frame_Shift_Del p.V239Lfs*2 0.14 TCGA-BR-6852-01 14 37969313 37969313 C T MIPOL1 Missense_Mutation p.A411V 0.21 tolerated(0.06) benign(0.094) TCGA-BR-6852-01 14 45693641 45693641 G A MIS18BP1 Missense_Mutation p.R717C 0.18 tolerated(0.15) benign(0.001) TCGA-BR-6852-01 14 50088877 50088877 T A MGAT2 Missense_Mutation p.S297R 0.14 tolerated(0.38) benign(0.07) TCGA-BR-6852-01 14 50176507 50176507 T - KLHDC1 Frame_Shift_Del p.F84Lfs*53 0.09 TCGA-BR-6852-01 14 50911877 50911877 C T MAP4K5 Silent p.P407P 0.18 TCGA-BR-6852-01 14 51237224 51237224 T C NIN Missense_Mutation p.K439R 0.05 tolerated(0.32) benign(0.03) TCGA-BR-6852-01 14 54886793 54886793 A G CDKN3 Silent p.R212R 0.26 TCGA-BR-6852-01 14 59821946 59821946 T C DAAM1 Missense_Mutation p.V817A 0.04 deleterious(0) probably_damaging(0.987) TCGA-BR-6852-01 14 64519852 64519852 A G SYNE2 Missense_Mutation p.D3074G 0.25 benign(0.001) TCGA-BR-6852-01 14 64908801 64908801 G A MTHFD1 Silent p.P638P 0.21 TCGA-BR-6852-01 14 69256455 69256455 C - ZFP36L1 Frame_Shift_Del p.G271Vfs*36 0.21 TCGA-BR-6852-01 14 69358883 69358883 G A ACTN1 Missense_Mutation p.P325S 0.20 deleterious(0.02) probably_damaging(1) TCGA-BR-6852-01 14 71443908 71443908 G A PCNX Missense_Mutation p.R285Q 0.17 tolerated_low_confidence(0.14) probably_damaging(0.997) TCGA-BR-6852-01 14 75537988 75537988 C T ZC2HC1C Silent p.L238L 0.16 TCGA-BR-6852-01 14 77242266 77242266 C T VASH1 Missense_Mutation p.R188C 0.25 deleterious(0) probably_damaging(0.996) TCGA-BR-6852-01 14 77745128 77745128 C T POMT2 Missense_Mutation p.R659Q 0.19 deleterious(0) probably_damaging(1) TCGA-BR-6852-01 14 88934320 88934320 G A PTPN21 3'UTR 0.21 TCGA-BR-6852-01 14 90870757 90870757 G A CALM1 Missense_Mutation p.R107H 0.12 tolerated_low_confidence(0.07) benign(0.11) TCGA-BR-6852-01 14 91633872 91633872 G A C14orf159 Intron 0.27 TCGA-BR-6852-01 14 91700767 91700767 G A GPR68 Missense_Mutation p.R210C 0.17 deleterious(0) probably_damaging(0.913) TCGA-BR-6852-01 14 94394712 94394712 G A FAM181A Silent p.K89K 0.18 TCGA-BR-6852-01 14 94933480 94933480 T C SERPINA9 Missense_Mutation p.T308A 0.16 deleterious(0.02) benign(0.092) TCGA-BR-6852-01 14 95234924 95234924 C A GSC Silent p.S226S 0.16 TCGA-BR-6852-01 15 22863109 22863109 A - TUBGCP5 Frame_Shift_Del p.D713Ifs*5 0.15 TCGA-BR-6852-01 15 23890069 23890069 G - MAGEL2 Frame_Shift_Del p.R338Vfs*3 0.17 TCGA-BR-6852-01 15 23931740 23931740 C T NDN Missense_Mutation p.A209T 0.14 tolerated(0.17) probably_damaging(0.976) TCGA-BR-6852-01 15 25351699 25351699 T G SNORD116-29 RNA 0.09 TCGA-BR-6852-01 15 25474162 25474162 A - SNORD115-32 RNA 0.15 TCGA-BR-6852-01 15 25926148 25926148 G T ATP10A Missense_Mutation p.P1189H 0.11 deleterious(0) probably_damaging(0.915) TCGA-BR-6852-01 15 34543198 34543198 G T SLC12A6 Missense_Mutation p.S465Y 0.18 deleterious(0.05) probably_damaging(0.968) TCGA-BR-6852-01 15 39874463 39874463 G A THBS1 Missense_Mutation p.R46H 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.463) TCGA-BR-6852-01 15 40659686 40659686 C - DISP2 Frame_Shift_Del p.W460Gfs*22 0.14 TCGA-BR-6852-01 15 41059498 41059498 G T GCHFR Missense_Mutation p.S69I 0.11 deleterious(0.01) probably_damaging(0.965) TCGA-BR-6852-01 15 41192607 41192607 C T VPS18 Missense_Mutation p.R531C 0.21 deleterious(0) possibly_damaging(0.676) TCGA-BR-6852-01 15 42040995 42040995 T C MGA Silent p.P1791P 0.05 TCGA-BR-6852-01 15 42041014 42041014 A G MGA Missense_Mutation p.M1798V 0.20 tolerated(0.76) benign(0.109) TCGA-BR-6852-01 15 42110261 42110261 T C MAPKBP1 Silent p.G659G 0.14 TCGA-BR-6852-01 15 42364044 42364044 G A PLA2G4D Missense_Mutation p.L501F 0.08 tolerated(0.7) benign(0.365) TCGA-BR-6852-01 15 42529648 42529648 G A TMEM87A Nonsense_Mutation p.R284* 0.18 TCGA-BR-6852-01 15 43025362 43025362 G A CDAN1 Nonsense_Mutation p.R464* 0.17 TCGA-BR-6852-01 15 43662097 43662097 T C ZSCAN29 Silent p.S5S 0.14 TCGA-BR-6852-01 15 45003781 45003782 CT - B2M Frame_Shift_Del p.L15Ffs*41 0.19 TCGA-BR-6852-01 15 45556153 45556153 T C SLC28A2 Missense_Mutation p.L174P 0.17 deleterious(0) probably_damaging(0.999) TCGA-BR-6852-01 15 45706832 45706832 G T SPATA5L1 Nonsense_Mutation p.G500* 0.22 TCGA-BR-6852-01 15 51634172 51634172 C T GLDN Silent p.S97S 0.16 TCGA-BR-6852-01 15 52356198 52356198 T C MAPK6 Silent p.T389T 0.16 TCGA-BR-6852-01 15 52564028 52564028 C T MYO5C Missense_Mutation p.R255Q 0.09 deleterious(0) probably_damaging(0.985) TCGA-BR-6852-01 15 54626040 54626040 T - UNC13C Frame_Shift_Del p.F1525Lfs*3 0.14 TCGA-BR-6852-01 15 59182562 59182562 C T SLTM Missense_Mutation p.R666H 0.19 deleterious(0) unknown(0) TCGA-BR-6852-01 15 64967127 64967127 G A ZNF609 Missense_Mutation p.A692T 0.24 deleterious(0.04) benign(0.001) TCGA-BR-6852-01 15 66792468 66792468 A G RPL4 Silent p.L322L 0.08 TCGA-BR-6852-01 15 68987583 68987583 G A CORO2B Silent p.S107S 0.17 TCGA-BR-6852-01 15 69238906 69238906 G A SPESP1 Missense_Mutation p.A345T 0.20 tolerated_low_confidence(0.65) benign(0) TCGA-BR-6852-01 15 70960670 70960670 A T UACA Missense_Mutation p.L785M 0.21 deleterious(0) probably_damaging(0.999) TCGA-BR-6852-01 15 72057527 72057527 G A THSD4 Missense_Mutation p.E920K 0.22 tolerated(0.2) benign(0.34) TCGA-BR-6852-01 15 75979694 75979694 G T CSPG4 Missense_Mutation p.P1238T 0.09 deleterious(0.01) possibly_damaging(0.616) TCGA-BR-6852-01 15 77328231 77328231 C A PSTPIP1 Silent p.A358A 0.19 TCGA-BR-6852-01 15 77907861 77907861 G A LINGO1 Missense_Mutation p.R130C 0.07 deleterious(0) possibly_damaging(0.887) TCGA-BR-6852-01 15 81428869 81428869 G A C15orf26 Missense_Mutation p.V58I 0.15 tolerated(0.35) benign(0.022) TCGA-BR-6852-01 15 81592469 81592469 C - IL16 Frame_Shift_Del p.P936Lfs*7 0.21 TCGA-BR-6852-01 15 90159667 90159667 C T TICRR Silent p.A967A 0.11 TCGA-BR-6852-01 15 92706126 92706126 G A SLCO3A1 Missense_Mutation p.A632T 0.21 tolerated(0.55) benign(0.002) TCGA-BR-6852-01 15 94901754 94901754 A T MCTP2 Missense_Mutation p.D405V 0.06 deleterious(0) probably_damaging(0.979) TCGA-BR-6852-01 16 10788315 10788315 C T TEKT5 Missense_Mutation p.R139Q 0.14 tolerated(0.24) benign(0.097) TCGA-BR-6852-01 16 11219940 11219940 C T CLEC16A Missense_Mutation p.R860C 0.05 deleterious(0) probably_damaging(0.996) TCGA-BR-6852-01 16 11785786 11785786 C T TXNDC11 Silent p.A420A 0.15 TCGA-BR-6852-01 16 11931765 11931765 G A RSL1D1 Missense_Mutation p.A451V 0.16 tolerated(0.78) benign(0.003) TCGA-BR-6852-01 16 12492300 12492300 T C SNX29 Intron 0.17 TCGA-BR-6852-01 16 1705981 1705981 C T CRAMP1L Missense_Mutation p.P408L 0.17 deleterious(0.04) probably_damaging(0.996) TCGA-BR-6852-01 16 20844363 20844363 T - AC004381.6 Frame_Shift_Del p.L436* 0.14 TCGA-BR-6852-01 16 22359037 22359037 A G CDR2 Missense_Mutation p.L205S 0.17 deleterious(0) probably_damaging(0.983) TCGA-BR-6852-01 16 23647028 23647028 T - PALB2 Frame_Shift_Del p.N280Tfs*8 0.14 TCGA-BR-6852-01 16 23695280 23695280 C T PLK1 Silent p.D302D 0.15 TCGA-BR-6852-01 16 24372780 24372780 G A CACNG3 Missense_Mutation p.G182R 0.11 deleterious(0) probably_damaging(0.993) TCGA-BR-6852-01 16 2581057 2581057 A G CEMP1 Silent p.T6T 0.11 TCGA-BR-6852-01 16 27237123 27237123 G A NSMCE1 Silent p.C215C 0.23 TCGA-BR-6852-01 16 28877939 28877939 C T SH2B1 Missense_Mutation p.T175I 0.15 deleterious(0) benign(0.103) TCGA-BR-6852-01 16 30096003 30096003 C T PPP4C Silent p.G207G 0.13 TCGA-BR-6852-01 16 30096284 30096284 G A PPP4C Silent p.L275L 0.16 TCGA-BR-6852-01 16 30097873 30097873 G T TBX6 Missense_Mutation p.P353T 0.30 deleterious(0.04) probably_damaging(0.997) TCGA-BR-6852-01 16 30435737 30435737 G A DCTPP1 Silent p.C110C 0.19 TCGA-BR-6852-01 16 30529992 30529992 C T ITGAL Silent p.N1060N 0.11 TCGA-BR-6852-01 16 30663120 30663120 G A PRR14 Silent p.P9P 0.11 TCGA-BR-6852-01 16 31374258 31374258 C T ITGAX Silent p.I454I 0.22 TCGA-BR-6852-01 16 32891823 32891823 G T SLC6A10P RNA 0.20 TCGA-BR-6852-01 16 3350127 3350127 A G TIGD7 Missense_Mutation p.I163T 0.14 deleterious(0.01) benign(0.029) TCGA-BR-6852-01 16 3614999 3614999 G A NLRC3 Silent p.G60G 0.34 TCGA-BR-6852-01 16 419103 419103 C T MRPL28 Missense_Mutation p.D136N 0.18 deleterious(0) probably_damaging(0.923) TCGA-BR-6852-01 16 46723639 46723639 C T ORC6 Missense_Mutation p.R8C 0.15 deleterious(0.04) benign(0.064) TCGA-BR-6852-01 16 4786531 4786531 A G C16orf71 Missense_Mutation p.K6E 0.09 tolerated(0.29) benign(0) TCGA-BR-6852-01 16 48201547 48201547 C A ABCC11 Missense_Mutation p.A1306S 0.13 deleterious(0.03) probably_damaging(0.997) TCGA-BR-6852-01 16 4934623 4934623 G A PPL Missense_Mutation p.R1345W 0.21 deleterious(0) benign(0.339) TCGA-BR-6852-01 16 4944500 4944500 G - PPL Frame_Shift_Del p.T455Qfs*37 0.15 TCGA-BR-6852-01 16 52472777 52472777 A G TOX3 3'UTR 0.16 TCGA-BR-6852-01 16 53243646 53243646 A T CHD9 Missense_Mutation p.R569W 0.25 probably_damaging(0.945) TCGA-BR-6852-01 16 53859941 53859941 A G FTO Missense_Mutation p.I97V 0.17 tolerated(0.23) benign(0.214) TCGA-BR-6852-01 16 57007277 57007277 T C CETP Missense_Mutation p.L262P 0.17 deleterious(0.02) benign(0.289) TCGA-BR-6852-01 16 57694771 57694771 C T GPR56 Silent p.G555G 0.09 TCGA-BR-6852-01 16 65026836 65026836 A - CDH11 Frame_Shift_Del p.S209Rfs*27 0.12 TCGA-BR-6852-01 16 66436970 66436970 C T CDH5 Silent p.S751S 0.31 TCGA-BR-6852-01 16 66997277 66997277 C T CES3 Missense_Mutation p.A93V 0.14 tolerated(0.15) benign(0.08) TCGA-BR-6852-01 16 67043039 67043039 A G CES4A 3'UTR 0.18 TCGA-BR-6852-01 16 67197591 67197591 C T FBXL8 Silent p.R331R 0.44 TCGA-BR-6852-01 16 67199648 67199648 G A HSF4 Missense_Mutation p.E87K 0.07 deleterious(0) possibly_damaging(0.624) TCGA-BR-6852-01 16 67265195 67265195 G A FHOD1 Missense_Mutation p.R855C 0.10 deleterious(0) probably_damaging(0.993) TCGA-BR-6852-01 16 67271645 67271645 C T FHOD1 Silent p.L223L 0.18 TCGA-BR-6852-01 16 67318714 67318714 G A PLEKHG4 Silent p.R597R 0.10 TCGA-BR-6852-01 16 69377458 69377458 A - TMED6 Frame_Shift_Del p.F192Sfs*10 0.15 TCGA-BR-6852-01 16 71674810 71674810 C T MARVELD3 Silent p.Y371Y 0.14 TCGA-BR-6852-01 16 72845891 72845891 G A ZFHX3 Silent p.T1192T 0.18 TCGA-BR-6852-01 16 75512732 75512732 G T CHST6 Missense_Mutation p.A332D 0.17 deleterious(0) probably_damaging(0.999) TCGA-BR-6852-01 16 75563452 75563452 G A CHST5 Silent p.A277A 0.14 TCGA-BR-6852-01 16 780438 780438 A G NARFL Silent p.T470T 0.12 TCGA-BR-6852-01 16 79633683 79633683 G A MAF Silent p.T39T 0.16 TCGA-BR-6852-01 16 87367566 87367566 C T FBXO31 Silent p.G441G 0.21 TCGA-BR-6852-01 16 88601490 88601490 G A ZFPM1 3'UTR 0.14 TCGA-BR-6852-01 16 89169086 89169086 C T ACSF3 Silent p.V247V 0.12 TCGA-BR-6852-01 16 90162358 90162358 G A TUBB8P7 RNA 0.19 TCGA-BR-6852-01 16 97531 97531 G A POLR3K Missense_Mutation p.R76C 0.19 deleterious(0.03) benign(0.224) TCGA-BR-6852-01 17 1538416 1538416 C T SCARF1 Missense_Mutation p.R710H 0.07 deleterious(0.02) probably_damaging(0.991) TCGA-BR-6852-01 17 1538421 1538421 G A SCARF1 Silent p.V708V 0.16 TCGA-BR-6852-01 17 1649113 1649113 C A SERPINF2 Missense_Mutation p.L93M 0.17 deleterious(0) probably_damaging(0.999) TCGA-BR-6852-01 17 16843050 16843050 G T TNFRSF13B Missense_Mutation p.S231R 0.26 deleterious(0) probably_damaging(0.937) TCGA-BR-6852-01 17 17046886 17046886 C - MPRIP Frame_Shift_Del p.P353Qfs*30 0.16 TCGA-BR-6852-01 17 17700556 17700556 C A RAI1 Missense_Mutation p.P1432T 0.10 tolerated(0.09) benign(0.012) TCGA-BR-6852-01 17 17896209 17896209 G A LRRC48 Missense_Mutation p.R192H 0.08 deleterious(0.04) benign(0.022) TCGA-BR-6852-01 17 18022183 18022183 G A MYO15A Silent p.P23P 0.23 TCGA-BR-6852-01 17 1840945 1840945 C T RTN4RL1 Silent p.E57E 0.15 TCGA-BR-6852-01 17 18907368 18907369 - G FAM83G 5'UTR 0.22 TCGA-BR-6852-01 17 19284193 19284193 C T MAPK7 Missense_Mutation p.T224M 0.15 deleterious(0) possibly_damaging(0.856) TCGA-BR-6852-01 17 26816239 26816239 A G SLC13A2 Missense_Mutation p.Y37C 0.16 deleterious(0.02) benign(0.076) TCGA-BR-6852-01 17 26900833 26900833 G T ALDOC Missense_Mutation p.Q307K 0.20 deleterious(0) probably_damaging(0.954) TCGA-BR-6852-01 17 27008285 27008285 T A SUPT6H Missense_Mutation p.V454D 0.05 deleterious(0) possibly_damaging(0.904) TCGA-BR-6852-01 17 27905345 27905345 G A GIT1 Silent p.D294D 0.15 TCGA-BR-6852-01 17 28511844 28511844 G A NSRP1 Missense_Mutation p.E277K 0.28 tolerated(0.29) benign(0.005) TCGA-BR-6852-01 17 30814811 30814811 T C CDK5R1 Missense_Mutation p.V58A 0.16 tolerated(1) benign(0.027) TCGA-BR-6852-01 17 33497136 33497136 G A UNC45B Nonsense_Mutation p.W517* 0.21 TCGA-BR-6852-01 17 34493416 34493416 C T TBC1D3B Missense_Mutation p.G537S 0.04 tolerated_low_confidence(0.74) benign(0.041) TCGA-BR-6852-01 17 35837046 35837047 TA - TADA2A Frame_Shift_Del p.Y431* 0.15 TCGA-BR-6852-01 17 35937667 35937667 T C SYNRG Missense_Mutation p.T212A 0.14 tolerated(1) benign(0.003) TCGA-BR-6852-01 17 37226124 37226124 C T PLXDC1 Silent p.A456A 0.18 TCGA-BR-6852-01 17 37243922 37243922 C T PLXDC1 Missense_Mutation p.R282H 0.20 deleterious(0) probably_damaging(0.975) TCGA-BR-6852-01 17 37866359 37866359 G T ERBB2 Missense_Mutation p.G222C 0.17 deleterious(0.01) possibly_damaging(0.66) TCGA-BR-6852-01 17 37902012 37902012 T C GRB7 Missense_Mutation p.M437T 0.15 tolerated(0.43) benign(0) TCGA-BR-6852-01 17 38126776 38126776 A C GSDMA Missense_Mutation p.D145A 0.14 tolerated(0.48) benign(0.029) TCGA-BR-6852-01 17 38252191 38252191 G T NR1D1 Missense_Mutation p.P252T 0.14 tolerated(0.17) benign(0) TCGA-BR-6852-01 17 3833644 3833644 T C ATP2A3 Missense_Mutation p.M899V 0.18 tolerated(0.32) probably_damaging(0.987) TCGA-BR-6852-01 17 38546381 38546381 T - TOP2A Frame_Shift_Del p.R1435Gfs*13 0.20 TCGA-BR-6852-01 17 38859493 38859493 C A KRT24 Missense_Mutation p.L151F 0.04 deleterious(0) probably_damaging(1) TCGA-BR-6852-01 17 39538427 39538427 G - KRT34 Frame_Shift_Del p.S67Afs*17 0.08 TCGA-BR-6852-01 17 39925887 39925887 C T JUP Missense_Mutation p.R84Q 0.10 deleterious(0) benign(0.047) TCGA-BR-6852-01 17 40362289 40362289 C A STAT5B Missense_Mutation p.Q602H 0.16 tolerated(0.08) benign(0.018) TCGA-BR-6852-01 17 40970673 40970675 ATG - BECN1 In_Frame_Del p.I125del 0.17 TCGA-BR-6852-01 17 42430105 42430105 G A GRN Missense_Mutation p.R574H 0.20 tolerated(0.18) benign(0.013) TCGA-BR-6852-01 17 42477205 42477207 CTT - GPATCH8 In_Frame_Del p.R749del 0.26 TCGA-BR-6852-01 17 42824762 42824762 C T DBF4B Missense_Mutation p.L315F 0.18 deleterious(0) probably_damaging(0.999) TCGA-BR-6852-01 17 4337322 4337322 G T SPNS3 Missense_Mutation p.Q20H 0.16 tolerated(0.28) benign(0.047) TCGA-BR-6852-01 17 44076862 44076862 A G STH Missense_Mutation p.I73V 0.15 deleterious_low_confidence(0) benign(0.068) TCGA-BR-6852-01 17 45286742 45286742 G A MYL4 Intron 0.20 TCGA-BR-6852-01 17 4620985 4620985 C T ARRB2 Silent p.C162C 0.14 TCGA-BR-6852-01 17 4688653 4688653 C G VMO1 3'UTR 0.25 TCGA-BR-6852-01 17 47233956 47233956 C T B4GALNT2 Silent p.P223P 0.20 TCGA-BR-6852-01 17 4883536 4883536 C T CAMTA2 Missense_Mutation p.G384S 0.18 tolerated_low_confidence(0.2) probably_damaging(0.999) TCGA-BR-6852-01 17 49825029 49825029 C T CA10 Silent p.S143S 0.17 TCGA-BR-6852-01 17 5292206 5292206 C T NUP88 Missense_Mutation p.R520H 0.15 deleterious(0.03) possibly_damaging(0.479) TCGA-BR-6852-01 17 55083674 55083674 G A SCPEP1 3'UTR 0.26 TCGA-BR-6852-01 17 56663315 56663316 - G TEX14 Frame_Shift_Ins p.I979Hfs*2 0.16 TCGA-BR-6852-01 17 58013600 58013600 C T RPS6KB1 Missense_Mutation p.R335C 0.20 deleterious(0) probably_damaging(1) TCGA-BR-6852-01 17 59479233 59479234 - G TBX2 Frame_Shift_Ins p.E197Gfs*6 0.19 TCGA-BR-6852-01 17 61902275 61902275 A G FTSJ3 Silent p.A242A 0.17 TCGA-BR-6852-01 17 62022940 62022940 C T SCN4A Missense_Mutation p.C1167Y 0.20 deleterious(0) probably_damaging(1) TCGA-BR-6852-01 17 62050177 62050177 G T SCN4A Missense_Mutation p.L9M 0.28 deleterious_low_confidence(0) benign(0.254) TCGA-BR-6852-01 17 62265566 62265566 G - TEX2 Frame_Shift_Del p.L803Cfs*29 0.11 TCGA-BR-6852-01 17 62541848 62541855 AAAAGGGG - SMURF2 3'UTR 0.37 TCGA-BR-6852-01 17 62594568 62594568 A G SMURF2 Silent p.S44S 0.15 TCGA-BR-6852-01 17 62855982 62855982 C T LRRC37A3 Missense_Mutation p.A1428T 0.24 tolerated(0.06) benign(0.233) TCGA-BR-6852-01 17 63923699 63923699 C T CEP112 Splice_Site p.X660_splice 0.12 TCGA-BR-6852-01 17 6538469 6538469 A C KIAA0753 5'UTR 0.15 TCGA-BR-6852-01 17 66040600 66040600 C T KPNA2 Missense_Mutation p.A443V 0.12 tolerated(0.23) possibly_damaging(0.722) TCGA-BR-6852-01 17 72832176 72832176 G A TMEM104 Missense_Mutation p.V281I 0.23 tolerated(0.37) benign(0.42) TCGA-BR-6852-01 17 72846360 72846360 G A GRIN2C Silent p.N492N 0.48 TCGA-BR-6852-01 17 72942899 72942899 C T OTOP3 Missense_Mutation p.R317C 0.14 deleterious(0) probably_damaging(1) TCGA-BR-6852-01 17 7319413 7319413 T G NLGN2 Missense_Mutation p.F541V 0.10 deleterious(0.01) probably_damaging(0.996) TCGA-BR-6852-01 17 7348740 7348741 - G CHRNB1 Intron 0.14 TCGA-BR-6852-01 17 73500034 73500034 C T CASKIN2 Missense_Mutation p.A493T 0.16 deleterious(0.01) probably_damaging(0.971) TCGA-BR-6852-01 17 74005246 74005246 G A EVPL Missense_Mutation p.A1347V 0.18 tolerated(1) benign(0.359) TCGA-BR-6852-01 17 76219627 76219627 A G BIRC5 Missense_Mutation p.M164V 0.10 tolerated_low_confidence(0.1) benign(0) TCGA-BR-6852-01 17 76400143 76400143 C T PGS1 Missense_Mutation p.R459W 0.19 deleterious(0) probably_damaging(0.998) TCGA-BR-6852-01 17 7751561 7751561 C - KDM6B Frame_Shift_Del p.Q654Sfs*46 0.21 TCGA-BR-6852-01 17 77709383 77709383 C T ENPP7 Missense_Mutation p.A314V 0.10 deleterious(0.01) benign(0.109) TCGA-BR-6852-01 17 7809454 7809454 G - CHD3 Intron 0.16 TCGA-BR-6852-01 17 78320622 78320622 G A RNF213 Silent p.Q2829Q 0.17 TCGA-BR-6852-01 17 79060288 79060288 G A BAIAP2 Missense_Mutation p.A133T 0.07 deleterious(0.02) benign(0.225) TCGA-BR-6852-01 17 79078359 79078359 T C BAIAP2 Missense_Mutation p.L371P 0.15 deleterious(0.03) possibly_damaging(0.574) TCGA-BR-6852-01 17 80017900 80017900 G A DUS1L Silent p.G364G 0.27 TCGA-BR-6852-01 17 80828180 80828180 G A TBCD Missense_Mutation p.A467T 0.23 deleterious(0.02) possibly_damaging(0.604) TCGA-BR-6852-01 17 8219453 8219453 G A ARHGEF15 Missense_Mutation p.R564H 0.11 deleterious(0) probably_damaging(0.993) TCGA-BR-6852-01 17 970397 970397 G - ABR Frame_Shift_Del p.Q368Rfs*13 0.15 TCGA-BR-6852-01 18 10677801 10677801 C T PIEZO2 Missense_Mutation p.R2562Q 0.19 deleterious(0) benign(0.151) TCGA-BR-6852-01 18 12325183 12325183 G A TUBB6 Missense_Mutation p.G132D 0.15 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-BR-6852-01 18 14542908 14542908 C T POTEC Missense_Mutation p.V80M 0.06 tolerated_low_confidence(0.06) benign(0) TCGA-BR-6852-01 18 21118569 21118569 C - NPC1 Frame_Shift_Del p.G993Efs*4 0.15 TCGA-BR-6852-01 18 22669475 22669475 T A ZNF521 Missense_Mutation p.D1287V 0.10 deleterious(0.01) benign(0.002) TCGA-BR-6852-01 18 22806621 22806621 G T ZNF521 Missense_Mutation p.L421M 0.15 deleterious(0) probably_damaging(0.972) TCGA-BR-6852-01 18 28989503 28989505 AGA - DSG4 In_Frame_Del p.E675del 0.23 TCGA-BR-6852-01 18 33704629 33704629 C T SLC39A6 Missense_Mutation p.G275D 0.17 deleterious(0) probably_damaging(1) TCGA-BR-6852-01 18 33795561 33795561 C T MOCOS Missense_Mutation p.S473L 0.15 deleterious(0) probably_damaging(1) TCGA-BR-6852-01 18 34156416 34156416 T C FHOD3 Silent p.L172L 0.24 TCGA-BR-6852-01 18 34340622 34340622 C T FHOD3 Silent p.L1318L 0.14 TCGA-BR-6852-01 18 34833784 34833784 C T CELF4 Missense_Mutation p.R484H 0.12 tolerated(0.14) benign(0.002) TCGA-BR-6852-01 18 43481065 43481065 C T EPG5 Silent p.P1514P 0.15 TCGA-BR-6852-01 18 47809282 47809282 C T CXXC1 Missense_Mutation p.R593H 0.07 tolerated(0.12) benign(0.166) TCGA-BR-6852-01 18 48333094 48333094 C T MRO Missense_Mutation p.A90T 0.16 deleterious(0.04) probably_damaging(0.99) TCGA-BR-6852-01 18 51013231 51013231 T A DCC Silent p.S1267S 0.22 TCGA-BR-6852-01 18 59206270 59206270 G T CDH20 Missense_Mutation p.Q474H 0.09 deleterious(0.04) benign(0.015) TCGA-BR-6852-01 18 64239444 64239444 C T CDH19 5'UTR 0.18 TCGA-BR-6852-01 18 67817279 67817279 T C RTTN Silent p.G700G 0.09 TCGA-BR-6852-01 18 6942108 6942108 G A LAMA1 Silent p.F3066F 0.14 TCGA-BR-6852-01 18 6949117 6949117 C T LAMA1 Missense_Mutation p.A2847T 0.06 tolerated(1) benign(0.11) TCGA-BR-6852-01 18 6985243 6985243 G T LAMA1 Missense_Mutation p.L1885M 0.20 deleterious(0.02) possibly_damaging(0.701) TCGA-BR-6852-01 18 7014008 7014008 C T LAMA1 Missense_Mutation p.D1057N 0.29 tolerated(0.74) benign(0.365) TCGA-BR-6852-01 18 7049221 7049221 A G LAMA1 Silent p.A208A 0.16 TCGA-BR-6852-01 18 72589255 72589255 G A ZNF407 Nonsense_Mutation p.W1660* 0.04 TCGA-BR-6852-01 18 77170867 77170867 G A NFATC1 Missense_Mutation p.A185T 0.07 tolerated(0.48) benign(0.029) TCGA-BR-6852-01 18 8718506 8718506 C T SOGA2 Missense_Mutation p.R20W 0.14 deleterious(0) probably_damaging(1) TCGA-BR-6852-01 18 9258243 9258243 C T ANKRD12 Missense_Mutation p.P1660S 0.21 tolerated_low_confidence(0.65) benign(0.014) TCGA-BR-6852-01 19 10226702 10226702 G A EIF3G Missense_Mutation p.P215L 0.12 deleterious(0) probably_damaging(0.917) TCGA-BR-6852-01 19 10260288 10260288 G A DNMT1 Silent p.H809H 0.04 TCGA-BR-6852-01 19 10823277 10823277 C T QTRT1 Silent p.F278F 0.05 TCGA-BR-6852-01 19 1109760 1109760 G A SBNO2 Silent p.I1015I 0.13 TCGA-BR-6852-01 19 11224051 11224051 C T LDLR Silent p.N428N 0.12 TCGA-BR-6852-01 19 12128744 12128744 T - ZNF433 Frame_Shift_Del p.K49Nfs*9 0.12 TCGA-BR-6852-01 19 12429861 12429861 T C ZNF563 Missense_Mutation p.I326M 0.15 tolerated(0.28) possibly_damaging(0.793) TCGA-BR-6852-01 19 1257102 1257102 G A MIDN Missense_Mutation p.R413Q 0.11 tolerated(0.06) benign(0.238) TCGA-BR-6852-01 19 12826219 12826219 C T TNPO2 Missense_Mutation p.R189Q 0.17 deleterious(0.01) benign(0.045) TCGA-BR-6852-01 19 13414640 13414640 C - CACNA1A Frame_Shift_Del p.G682Afs*15 0.16 TCGA-BR-6852-01 19 1362336 1362336 T C MUM1 Missense_Mutation p.V401A 0.17 deleterious(0) benign(0.017) TCGA-BR-6852-01 19 1432615 1432615 C T DAZAP1 Missense_Mutation p.P325L 0.21 deleterious_low_confidence(0.01) unknown(0) TCGA-BR-6852-01 19 16860328 16860328 C T NWD1 Missense_Mutation p.A292V 0.12 tolerated(0.14) benign(0.008) TCGA-BR-6852-01 19 17081703 17081703 G - CPAMD8 Frame_Shift_Del p.R785Efs*32 0.16 TCGA-BR-6852-01 19 17213125 17213125 G A MYO9B Missense_Mutation p.V200M 0.04 deleterious(0) probably_damaging(1) TCGA-BR-6852-01 19 17449796 17449796 G A GTPBP3 Missense_Mutation p.G209S 0.17 tolerated(1) benign(0.02) TCGA-BR-6852-01 19 17611367 17611367 A G SLC27A1 Missense_Mutation p.Y466C 0.17 deleterious(0) probably_damaging(1) TCGA-BR-6852-01 19 17692195 17692195 C G COLGALT1 Missense_Mutation p.A604G 0.16 tolerated(0.08) benign(0.167) TCGA-BR-6852-01 19 17886908 17886908 G A FCHO1 Missense_Mutation p.E374K 0.26 tolerated(0.28) benign(0.037) TCGA-BR-6852-01 19 17919127 17919127 G A B3GNT3 Missense_Mutation p.G171R 0.05 tolerated(0.26) benign(0.391) TCGA-BR-6852-01 19 19312962 19312962 G A NR2C2AP Intron 0.22 TCGA-BR-6852-01 19 19758041 19758041 C T ATP13A1 Missense_Mutation p.S1001N 0.18 deleterious(0) probably_damaging(0.917) TCGA-BR-6852-01 19 21991137 21991137 A C ZNF43 Missense_Mutation p.C568G 0.18 deleterious(0) probably_damaging(0.977) TCGA-BR-6852-01 19 21992108 21992108 C T ZNF43 Missense_Mutation p.R244H 0.14 tolerated(0.84) benign(0.001) TCGA-BR-6852-01 19 2222099 2222099 C T DOT1L Silent p.T977T 0.20 TCGA-BR-6852-01 19 30193763 30193763 G A C19orf12 Silent p.A105A 0.19 TCGA-BR-6852-01 19 30934972 30934972 C T ZNF536 Missense_Mutation p.A168V 0.13 deleterious(0) probably_damaging(0.998) TCGA-BR-6852-01 19 34712518 34712518 C A LSM14A Missense_Mutation p.L415I 0.18 tolerated_low_confidence(0.44) benign(0.001) TCGA-BR-6852-01 19 35556774 35556774 C T HPN Silent p.G351G 0.19 TCGA-BR-6852-01 19 35752847 35752847 T C LSR Silent p.A246A 0.19 TCGA-BR-6852-01 19 35800926 35800926 G A MAG Missense_Mutation p.V461M 0.22 deleterious(0.02) probably_damaging(0.92) TCGA-BR-6852-01 19 35850476 35850476 G A FFAR3 Silent p.A228A 0.08 TCGA-BR-6852-01 19 36034524 36034524 G A GAPDHS Intron 0.13 TCGA-BR-6852-01 19 36211852 36211852 C T KMT2B Missense_Mutation p.R535C 0.23 probably_damaging(0.963) TCGA-BR-6852-01 19 36431074 36431074 C - LRFN3 Frame_Shift_Del p.L251Cfs*48 0.22 TCGA-BR-6852-01 19 3653503 3653503 C T PIP5K1C Missense_Mutation p.V236M 0.15 deleterious(0) probably_damaging(0.973) TCGA-BR-6852-01 19 36594727 36594727 G T WDR62 Nonsense_Mutation p.E1333* 0.09 TCGA-BR-6852-01 19 36686014 36686014 T A ZNF565 Missense_Mutation p.E18D 0.16 tolerated(0.06) probably_damaging(0.989) TCGA-BR-6852-01 19 3779120 3779120 C T MATK Missense_Mutation p.R357H 0.18 deleterious(0) probably_damaging(0.999) TCGA-BR-6852-01 19 37854405 37854405 A C HKR1 Silent p.R570R 0.11 TCGA-BR-6852-01 19 37905171 37905171 A - ZNF569 Frame_Shift_Del p.F130Sfs*17 0.15 TCGA-BR-6852-01 19 38742064 38742064 G A PPP1R14A Missense_Mutation p.A113V 0.23 tolerated(0.32) benign(0.001) TCGA-BR-6852-01 19 38899499 38899499 C T FAM98C Missense_Mutation p.R343C 0.21 deleterious(0) possibly_damaging(0.781) TCGA-BR-6852-01 19 39078063 39078063 C T RYR1 3'Flank 0.15 TCGA-BR-6852-01 19 39329634 39329634 G A HNRNPL Missense_Mutation p.P419S 0.04 deleterious(0) probably_damaging(0.993) TCGA-BR-6852-01 19 3941175 3941175 G T NMRK2 Missense_Mutation p.V168F 0.20 deleterious(0) possibly_damaging(0.864) TCGA-BR-6852-01 19 39735458 39735458 C T IFNL3 Silent p.L50L 0.14 TCGA-BR-6852-01 19 40320999 40320999 G - DYRK1B Intron 0.18 TCGA-BR-6852-01 19 40704384 40704384 G A MAP3K10 Missense_Mutation p.S262N 0.15 deleterious(0) probably_damaging(0.997) TCGA-BR-6852-01 19 40886552 40886552 G A HIPK4 Missense_Mutation p.A449V 0.23 tolerated_low_confidence(0.39) benign(0.001) TCGA-BR-6852-01 19 41860739 41860739 G A B9D2 Missense_Mutation p.P132S 0.21 tolerated(0.41) benign(0.378) TCGA-BR-6852-01 19 42729561 42729561 A G ZNF526 Missense_Mutation p.T336A 0.13 tolerated(0.6) benign(0.007) TCGA-BR-6852-01 19 42730480 42730480 C T ZNF526 Missense_Mutation p.A642V 0.19 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-BR-6852-01 19 42829035 42829035 G A TMEM145 3'UTR 0.45 TCGA-BR-6852-01 19 42848624 42848624 G A MEGF8 Missense_Mutation p.R607H 0.24 tolerated(0.09) benign(0.103) TCGA-BR-6852-01 19 43382143 43382143 C T PSG1 Missense_Mutation p.G118R 0.05 deleterious(0) probably_damaging(0.978) TCGA-BR-6852-01 19 44792076 44792076 G A ZNF235 Silent p.S504S 0.16 TCGA-BR-6852-01 19 45385524 45385524 G A PVRL2 Missense_Mutation p.A367T 0.17 tolerated(0.07) probably_damaging(0.927) TCGA-BR-6852-01 19 45783878 45783878 C T MARK4 Missense_Mutation p.R388W 0.15 deleterious(0.02) benign(0.001) TCGA-BR-6852-01 19 47969003 47969003 A - SLC8A2 Frame_Shift_Del p.S220Pfs*12 0.09 TCGA-BR-6852-01 19 49107020 49107020 C T FAM83E Missense_Mutation p.G303S 0.17 deleterious(0.05) possibly_damaging(0.719) TCGA-BR-6852-01 19 49993758 49993758 C T RPL13A Missense_Mutation p.R61W 0.07 deleterious(0.04) benign(0.005) TCGA-BR-6852-01 19 50154616 50154616 G A SCAF1 Missense_Mutation p.A324T 0.20 unknown(0) TCGA-BR-6852-01 19 51503767 51503767 G A KLK8 Missense_Mutation p.A93V 0.09 tolerated(0.74) benign(0.024) TCGA-BR-6852-01 19 53644036 53644036 T C ZNF347 Missense_Mutation p.Q683R 0.21 tolerated(0.05) benign(0.004) TCGA-BR-6852-01 19 53741121 53741121 C T ZNF677 Missense_Mutation p.G287R 0.19 tolerated(0.09) probably_damaging(0.986) TCGA-BR-6852-01 19 54206014 54206014 A G MIR518B RNA 0.09 TCGA-BR-6852-01 19 54206046 54206046 C T MIR518B RNA 0.37 TCGA-BR-6852-01 19 54297338 54297338 G A NLRP12 Nonsense_Mutation p.R1051* 0.15 TCGA-BR-6852-01 19 54376803 54376803 G A MYADM Missense_Mutation p.R7H 0.23 tolerated(0.78) possibly_damaging(0.84) TCGA-BR-6852-01 19 54401306 54401306 C T PRKCG Missense_Mutation p.R345C 0.18 deleterious(0.01) possibly_damaging(0.772) TCGA-BR-6852-01 19 54403976 54403976 C T PRKCG Silent p.C516C 0.03 TCGA-BR-6852-01 19 54662025 54662025 C T LENG1 Missense_Mutation p.E103K 0.14 deleterious(0) possibly_damaging(0.865) TCGA-BR-6852-01 19 54720971 54720971 G A LILRB3 Silent p.A630A 0.19 TCGA-BR-6852-01 19 54780248 54780248 C T LILRB2 Missense_Mutation p.G516S 0.17 tolerated(0.13) possibly_damaging(0.827) TCGA-BR-6852-01 19 58084147 58084147 A C ZNF416 Silent p.T375T 0.16 TCGA-BR-6852-01 19 58420174 58420174 G A ZNF417 Missense_Mutation p.P491L 0.12 deleterious(0.01) possibly_damaging(0.895) TCGA-BR-6852-01 19 58868484 58868484 G A ZNF497 Missense_Mutation p.A173V 0.14 tolerated(0.35) benign(0.013) TCGA-BR-6852-01 19 59028581 59028581 G A ZBTB45 Missense_Mutation p.R154C 0.16 deleterious(0) probably_damaging(0.993) TCGA-BR-6852-01 19 6694500 6694500 C A C3 Missense_Mutation p.E1032D 0.13 tolerated(0.39) benign(0.001) TCGA-BR-6852-01 19 6754122 6754122 G A SH2D3A Missense_Mutation p.A442V 0.18 deleterious(0.02) benign(0.358) TCGA-BR-6852-01 19 7585732 7585732 A G ZNF358 Missense_Mutation p.D535G 0.15 deleterious_low_confidence(0) benign(0.09) TCGA-BR-6852-01 19 7626170 7626170 C T PNPLA6 Silent p.P1340P 0.22 TCGA-BR-6852-01 19 7676000 7676000 C T CAMSAP3 Missense_Mutation p.R384C 0.23 deleterious(0.03) probably_damaging(0.954) TCGA-BR-6852-01 19 7806123 7806123 C T CD209 3'UTR 0.15 TCGA-BR-6852-01 19 805056 805056 G A PTBP1 Missense_Mutation p.R254H 0.18 tolerated(0.07) benign(0.102) TCGA-BR-6852-01 19 808629 808629 C T PTBP1 Missense_Mutation p.R444C 0.16 deleterious(0) benign(0.15) TCGA-BR-6852-01 19 9060188 9060189 - G MUC16 Frame_Shift_Ins p.G9087Wfs*39 0.11 TCGA-BR-6852-01 19 9063005 9063005 A C MUC16 Silent p.T8147T 0.16 TCGA-BR-6852-01 19 9083008 9083008 T - MUC16 Frame_Shift_Del p.N2936Tfs*6 0.13 TCGA-BR-6852-01 1 10042384 10042385 - G NMNAT1 Frame_Shift_Ins p.A157Gfs*16 0.19 TCGA-BR-6852-01 1 100483314 100483314 C T SLC35A3 Missense_Mutation p.S277L 0.08 deleterious(0) probably_damaging(0.943) TCGA-BR-6852-01 1 110038475 110038475 C T CYB561D1 Missense_Mutation p.A117V 0.16 tolerated(1) benign(0.008) TCGA-BR-6852-01 1 111216271 111216271 G A KCNA3 Silent p.L387L 0.14 TCGA-BR-6852-01 1 11184566 11184566 C G MTOR Silent p.R2217R 0.17 TCGA-BR-6852-01 1 113059876 113059876 C A WNT2B Missense_Mutation p.A272D 0.16 deleterious(0) probably_damaging(0.995) TCGA-BR-6852-01 1 113232051 113232051 A G MOV10 Missense_Mutation p.H119R 0.05 tolerated(0.74) benign(0.001) TCGA-BR-6852-01 1 115165628 115165628 T - DENND2C Frame_Shift_Del p.S346Vfs*22 0.17 TCGA-BR-6852-01 1 12052744 12052744 G T MFN2 Missense_Mutation p.G103V 0.15 deleterious(0) probably_damaging(1) TCGA-BR-6852-01 1 12328778 12328778 G A VPS13D Missense_Mutation p.G606D 0.14 benign(0) TCGA-BR-6852-01 1 1397981 1397981 C T ATAD3C Missense_Mutation p.R328C 0.12 deleterious(0) probably_damaging(0.953) TCGA-BR-6852-01 1 151991166 151991166 G A NBPF18P RNA 0.13 TCGA-BR-6852-01 1 152188455 152188455 A G HRNR Missense_Mutation p.Y1884H 0.04 unknown(0) TCGA-BR-6852-01 1 152283879 152283879 A G FLG Silent p.G1161G 0.13 TCGA-BR-6852-01 1 152329960 152329960 T C FLG2 Missense_Mutation p.K101R 0.20 unknown(0) TCGA-BR-6852-01 1 152382638 152382638 C T CRNN Missense_Mutation p.S307N 0.03 tolerated(0.14) benign(0.016) TCGA-BR-6852-01 1 152538251 152538251 G T LCE3E 3'UTR 0.32 TCGA-BR-6852-01 1 15370596 15370596 C T KAZN Missense_Mutation p.R223C 0.28 tolerated(0.06) probably_damaging(0.985) TCGA-BR-6852-01 1 155103820 155103820 G A EFNA1 Missense_Mutation p.R33Q 0.07 tolerated(0.55) benign(0.001) TCGA-BR-6852-01 1 155263247 155263247 C T PKLR Silent p.A417A 0.18 TCGA-BR-6852-01 1 155264098 155264098 C A PKLR Missense_Mutation p.K348N 0.25 deleterious(0) probably_damaging(1) TCGA-BR-6852-01 1 157667456 157667456 T G FCRL3 Missense_Mutation p.Q184H 0.18 deleterious(0) possibly_damaging(0.841) TCGA-BR-6852-01 1 158151478 158151478 G A CD1D Missense_Mutation p.V99M 0.20 tolerated(0.09) benign(0.12) TCGA-BR-6852-01 1 1588826 1588826 T - CDK11B Frame_Shift_Del p.N37Ifs*17 0.11 TCGA-BR-6852-01 1 159857704 159857704 C T CCDC19 Missense_Mutation p.R172Q 0.22 deleterious(0.03) benign(0.111) TCGA-BR-6852-01 1 160137172 160137172 G T ATP1A4 Missense_Mutation p.E487D 0.06 deleterious(0.03) possibly_damaging(0.671) TCGA-BR-6852-01 1 160607007 160607007 C T SLAMF1 Missense_Mutation p.R130H 0.15 tolerated(0.92) benign(0.002) TCGA-BR-6852-01 1 16091512 16091512 T C FBLIM1 Missense_Mutation p.S12P 0.05 deleterious(0) probably_damaging(0.972) TCGA-BR-6852-01 1 161133376 161133376 C T USP21 Missense_Mutation p.R361C 0.06 deleterious(0) possibly_damaging(0.761) TCGA-BR-6852-01 1 161198233 161198233 C A TOMM40L Missense_Mutation p.A208D 0.09 deleterious(0.05) probably_damaging(1) TCGA-BR-6852-01 1 161495324 161495324 C T HSPA6 Silent p.G292G 0.23 TCGA-BR-6852-01 1 16265849 16265849 G A SPEN Missense_Mutation p.R3641H 0.21 benign(0.232) TCGA-BR-6852-01 1 169541498 169541498 T C F5 Missense_Mutation p.I112V 0.24 deleterious(0.02) possibly_damaging(0.599) TCGA-BR-6852-01 1 172002361 172002361 G A DNM3 Missense_Mutation p.A269T 0.13 deleterious(0) probably_damaging(0.989) TCGA-BR-6852-01 1 172431363 172431363 T G C1orf105 Missense_Mutation p.F107V 0.24 deleterious(0.03) possibly_damaging(0.504) TCGA-BR-6852-01 1 179526176 179526176 C T NPHS2 Missense_Mutation p.A242T 0.19 deleterious(0) possibly_damaging(0.889) TCGA-BR-6852-01 1 18014124 18014124 G A ARHGEF10L Silent p.A1022A 0.23 TCGA-BR-6852-01 1 181701981 181701981 G A CACNA1E Missense_Mutation p.R920H 0.09 tolerated(0.18) possibly_damaging(0.522) TCGA-BR-6852-01 1 186302450 186302450 A C TPR Silent p.P1753P 0.16 TCGA-BR-6852-01 1 19404515 19404515 G A UBR4 Silent p.S5093S 0.17 TCGA-BR-6852-01 1 197032103 197032103 C T F13B Missense_Mutation p.S50N 0.13 tolerated(0.51) benign(0.008) TCGA-BR-6852-01 1 197621390 197621390 G A DENND1B Missense_Mutation p.A141V 0.10 deleterious(0.01) benign(0.426) TCGA-BR-6852-01 1 198711490 198711490 A C PTPRC Missense_Mutation p.Q897H 0.17 deleterious(0) probably_damaging(1) TCGA-BR-6852-01 1 201398381 201398381 C T RP11-134G8.2 RNA 0.16 TCGA-BR-6852-01 1 201618272 201618272 C - NAV1 Frame_Shift_Del p.L161Wfs*33 0.27 TCGA-BR-6852-01 1 201750218 201750218 A - NAV1 Frame_Shift_Del p.K483Nfs*9 0.19 TCGA-BR-6852-01 1 201983058 201983058 T A ELF3 Missense_Mutation p.F303I 0.18 deleterious(0) probably_damaging(0.999) TCGA-BR-6852-01 1 202702738 202702738 G A KDM5B Missense_Mutation p.P1234S 0.18 tolerated(0.92) benign(0.222) TCGA-BR-6852-01 1 203669950 203669950 G A ATP2B4 Missense_Mutation p.G267D 0.14 deleterious(0) probably_damaging(1) TCGA-BR-6852-01 1 204506617 204506617 C A MDM4 Missense_Mutation p.Q135K 0.22 tolerated(0.17) benign(0.006) TCGA-BR-6852-01 1 204588433 204588433 C T LRRN2 Missense_Mutation p.D230N 0.14 deleterious(0.04) benign(0.025) TCGA-BR-6852-01 1 205764510 205764510 C T SLC41A1 Missense_Mutation p.R390H 0.20 tolerated(0.14) probably_damaging(0.998) TCGA-BR-6852-01 1 206225358 206225358 G A AVPR1B Nonsense_Mutation p.W306* 0.18 TCGA-BR-6852-01 1 207240864 207240864 T C PFKFB2 Missense_Mutation p.V218A 0.06 probably_damaging(0.924) TCGA-BR-6852-01 1 20827876 20827877 - T MUL1 Frame_Shift_Ins p.N122Kfs*6 0.19 TCGA-BR-6852-01 1 20998683 20998683 C T KIF17 Missense_Mutation p.A824T 0.12 deleterious(0) probably_damaging(0.983) TCGA-BR-6852-01 1 2116304 2116304 C T C1orf86 3'Flank 0.38 TCGA-BR-6852-01 1 217793263 217793264 - T GPATCH2 Frame_Shift_Ins p.R212Kfs*15 0.13 TCGA-BR-6852-01 1 21929337 21929337 C T RAP1GAP Missense_Mutation p.A564T 0.07 tolerated(0.08) probably_damaging(0.977) TCGA-BR-6852-01 1 222889118 222889118 G A BROX Missense_Mutation p.G26D 0.20 tolerated(0.87) benign(0) TCGA-BR-6852-01 1 222898880 222898880 A G BROX Missense_Mutation p.Q188R 0.11 tolerated(0.1) possibly_damaging(0.812) TCGA-BR-6852-01 1 223177973 223177973 C T DISP1 Silent p.R1078R 0.09 TCGA-BR-6852-01 1 224922304 224922304 C T CNIH3 Silent p.Y117Y 0.12 TCGA-BR-6852-01 1 228345675 228345675 G A GJC2 Silent p.A72A 0.29 TCGA-BR-6852-01 1 229440936 229440936 T - SPHAR Frame_Shift_Del p.Y21Mfs*3 0.12 TCGA-BR-6852-01 1 233397834 233397834 G A PCNXL2 Missense_Mutation p.S146F 0.15 deleterious(0) possibly_damaging(0.595) TCGA-BR-6852-01 1 234569180 234569180 A T TARBP1 Missense_Mutation p.H790Q 0.26 tolerated(0.2) possibly_damaging(0.467) TCGA-BR-6852-01 1 23520100 23520100 C A HTR1D Missense_Mutation p.A205S 0.10 deleterious(0.04) probably_damaging(0.999) TCGA-BR-6852-01 1 236189263 236189263 G A NID1 Silent p.F639F 0.17 TCGA-BR-6852-01 1 236766615 236766615 C T HEATR1 Silent p.P68P 0.10 TCGA-BR-6852-01 1 24120833 24120833 C - LYPLA2 Intron 0.30 TCGA-BR-6852-01 1 242035442 242035442 T C EXO1 Missense_Mutation p.F459S 0.26 tolerated(0.91) benign(0.002) TCGA-BR-6852-01 1 243362382 243362382 T - CEP170 Frame_Shift_Del p.N204Tfs*11 0.09 TCGA-BR-6852-01 1 245850169 245850169 G A KIF26B Missense_Mutation p.C1295Y 0.11 tolerated(0.15) unknown(0) TCGA-BR-6852-01 1 24663276 24663276 C T GRHL3 Missense_Mutation p.R191C 0.15 deleterious(0.02) probably_damaging(0.999) TCGA-BR-6852-01 1 247654805 247654805 G A OR2W5 RNA 0.22 TCGA-BR-6852-01 1 248112658 248112658 T C OR2L8 Missense_Mutation p.Y167H 0.12 deleterious(0) probably_damaging(0.982) TCGA-BR-6852-01 1 248309379 248309379 T C OR2M5 Silent p.C310C 0.28 TCGA-BR-6852-01 1 248436684 248436684 A G OR2T33 Missense_Mutation p.S145P 0.08 tolerated(0.05) benign(0.003) TCGA-BR-6852-01 1 24995891 24995891 G A SRRM1 Missense_Mutation p.A673T 0.12 unknown(0) TCGA-BR-6852-01 1 27105931 27105931 G - ARID1A Frame_Shift_Del p.D1850Tfs*33 0.22 TCGA-BR-6852-01 1 27436018 27436018 G A SLC9A1 Missense_Mutation p.A355V 0.20 deleterious(0) probably_damaging(0.982) TCGA-BR-6852-01 1 27614178 27614178 C G WDTC1 Missense_Mutation p.A102G 0.11 deleterious(0.01) benign(0.018) TCGA-BR-6852-01 1 3322154 3322154 C T PRDM16 Silent p.A376A 0.19 TCGA-BR-6852-01 1 33402626 33402626 A G RNF19B Silent p.P660P 0.07 TCGA-BR-6852-01 1 35259929 35259929 C A GJA4 Missense_Mutation p.L39M 0.10 deleterious(0.03) possibly_damaging(0.863) TCGA-BR-6852-01 1 36040586 36040586 T A TFAP2E Missense_Mutation p.S183T 0.20 tolerated(1) benign(0.019) TCGA-BR-6852-01 1 36915870 36915870 T G OSCP1 Missense_Mutation p.K34T 0.10 deleterious(0) probably_damaging(0.954) TCGA-BR-6852-01 1 38344054 38344054 C T INPP5B Intron 0.21 TCGA-BR-6852-01 1 38455654 38455654 C A SF3A3 5'UTR 0.29 TCGA-BR-6852-01 1 39358878 39358878 G T RHBDL2 Missense_Mutation p.P210T 0.11 deleterious(0.01) probably_damaging(0.911) TCGA-BR-6852-01 1 39785384 39785385 - A MACF1 Frame_Shift_Ins p.F1339Ifs*13 0.27 TCGA-BR-6852-01 1 39823348 39823348 G A MACF1 Missense_Mutation p.S1847N 0.17 benign(0.003) TCGA-BR-6852-01 1 39919406 39919406 C T MACF1 Nonsense_Mutation p.R4865* 0.23 TCGA-BR-6852-01 1 40980785 40980785 G A EXO5 Missense_Mutation p.G190E 0.17 deleterious(0.03) benign(0.381) TCGA-BR-6852-01 1 41979370 41979370 G T HIVEP3 Missense_Mutation p.A1841D 0.23 probably_damaging(0.921) TCGA-BR-6852-01 1 44395978 44395980 AGA - ST3GAL3 3'UTR 0.27 TCGA-BR-6852-01 1 46661685 46661685 G A POMGNT1 Missense_Mutation p.T140M 0.17 probably_damaging(0.988) TCGA-BR-6852-01 1 47401267 47401267 T C CYP4A11 Missense_Mutation p.H188R 0.19 deleterious(0.01) possibly_damaging(0.548) TCGA-BR-6852-01 1 47512186 47512186 C T CYP4X1 Missense_Mutation p.T374M 0.21 tolerated(0.05) benign(0.049) TCGA-BR-6852-01 1 53364883 53364883 A G ECHDC2 Missense_Mutation p.V239A 0.15 deleterious(0) probably_damaging(0.968) TCGA-BR-6852-01 1 53377251 53377251 G A ECHDC2 Silent p.G88G 0.13 TCGA-BR-6852-01 1 53932347 53932347 G A DMRTB1 3'UTR 0.15 TCGA-BR-6852-01 1 54387300 54387300 T G HSPB11 3'UTR 0.16 TCGA-BR-6852-01 1 55277501 55277501 A C C1orf177 Missense_Mutation p.K172T 0.19 tolerated(0.06) possibly_damaging(0.888) TCGA-BR-6852-01 1 55512210 55512210 C A PCSK9 Silent p.P138P 0.07 TCGA-BR-6852-01 1 59156023 59156023 T - MYSM1 Frame_Shift_Del p.K95Nfs*3 0.18 TCGA-BR-6852-01 1 6246782 6246782 G A RPL22 Missense_Mutation p.R113C 0.18 tolerated(0.09) benign(0.094) TCGA-BR-6852-01 1 6314182 6314182 C T GPR153 Missense_Mutation p.V128M 0.17 tolerated(0.09) probably_damaging(1) TCGA-BR-6852-01 1 66833502 66833502 G A PDE4B Missense_Mutation p.R503H 0.16 deleterious(0) probably_damaging(0.971) TCGA-BR-6852-01 1 74670742 74670742 A G FPGT Missense_Mutation p.I337M 0.11 deleterious(0) probably_damaging(0.953) TCGA-BR-6852-01 1 74835236 74835236 G A FPGT-TNNI3K Missense_Mutation p.G659D 0.13 deleterious(0) probably_damaging(1) TCGA-BR-6852-01 1 84383310 84383310 T - TTLL7 Frame_Shift_Del p.T522Lfs*19 0.18 TCGA-BR-6852-01 1 84864322 84864322 G - DNASE2B Frame_Shift_Del p.A27Qfs*35 0.16 TCGA-BR-6852-01 1 879452 879452 C T SAMD11 Silent p.A655A 0.20 TCGA-BR-6852-01 1 93169000 93169000 A - EVI5 Frame_Shift_Del p.F216Lfs*15 0.15 TCGA-BR-6852-01 1 94564484 94564484 G A ABCA4 Missense_Mutation p.R212C 0.18 deleterious(0.04) possibly_damaging(0.893) TCGA-BR-6852-01 1 9655959 9655959 C T TMEM201 Missense_Mutation p.T42M 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-BR-6852-01 1 9776037 9776037 C - PIK3CD Frame_Shift_Del p.L169Cfs*48 0.23 TCGA-BR-6852-01 1 980635 980635 C T AGRN Silent p.G783G 0.16 TCGA-BR-6852-01 20 17943488 17943488 T G SNX5 Intron 0.17 TCGA-BR-6852-01 20 25656021 25656021 G A ZNF337 Nonsense_Mutation p.R635* 0.10 TCGA-BR-6852-01 20 32264963 32264963 G T E2F1 Silent p.P338P 0.16 TCGA-BR-6852-01 20 32664892 32664892 C A RALY Missense_Mutation p.S239R 0.22 tolerated_low_confidence(0.6) benign(0.061) TCGA-BR-6852-01 20 34572693 34572693 T - CNBD2 Frame_Shift_Del p.F238Lfs*19 0.20 TCGA-BR-6852-01 20 3683917 3683917 A G SIGLEC1 Silent p.T385T 0.19 TCGA-BR-6852-01 20 37464809 37464809 G A PPP1R16B Missense_Mutation p.A81T 0.15 tolerated(0.06) benign(0.007) TCGA-BR-6852-01 20 40743943 40743943 G A PTPRT Nonsense_Mutation p.R999* 0.16 TCGA-BR-6852-01 20 40864897 40864897 T G PTPRT Silent p.R772R 0.17 TCGA-BR-6852-01 20 40980816 40980816 T C PTPRT Missense_Mutation p.Y557C 0.19 deleterious(0) probably_damaging(0.999) TCGA-BR-6852-01 20 44519036 44519036 C T NEURL2 Missense_Mutation p.D199N 0.18 tolerated(0.22) benign(0.004) TCGA-BR-6852-01 20 45131154 45131154 C T ZNF334 Missense_Mutation p.R275H 0.12 tolerated(0.54) benign(0.028) TCGA-BR-6852-01 20 46267789 46267789 T A NCOA3 Silent p.P850P 0.06 TCGA-BR-6852-01 20 46282351 46282351 T - NCOA3 3'UTR 0.10 TCGA-BR-6852-01 20 47591403 47591403 C T ARFGEF2 Missense_Mutation p.T589I 0.14 tolerated(0.08) benign(0.009) TCGA-BR-6852-01 20 49575694 49575694 C T MOCS3 Silent p.G105G 0.15 TCGA-BR-6852-01 20 50273605 50273605 C T ATP9A Missense_Mutation p.V460M 0.11 deleterious(0.01) possibly_damaging(0.487) TCGA-BR-6852-01 20 50705100 50705100 G T ZFP64 Silent p.T156T 0.12 TCGA-BR-6852-01 20 51873029 51873029 T G TSHZ2 Missense_Mutation p.L1011R 0.17 deleterious(0) probably_damaging(1) TCGA-BR-6852-01 20 55059247 55059247 T C RTFDC1 Splice_Site p.X159_splice 0.16 TCGA-BR-6852-01 20 56234599 56234599 T C PMEPA1 Silent p.S88S 0.24 TCGA-BR-6852-01 20 5843700 5843700 A C C20orf196 Missense_Mutation p.N70T 0.13 deleterious(0.04) benign(0.048) TCGA-BR-6852-01 20 58562650 58562650 C T CDH26 Missense_Mutation p.S327L 0.06 tolerated(0.89) benign(0.001) TCGA-BR-6852-01 20 58562651 58562651 G A CDH26 Silent p.S327S 0.16 TCGA-BR-6852-01 20 60448911 60448911 C T CDH4 Silent p.S335S 0.14 TCGA-BR-6852-01 20 60893940 60893940 G A LAMA5 Missense_Mutation p.P2334L 0.11 benign(0.016) TCGA-BR-6852-01 20 61391727 61391727 A G NTSR1 3'UTR 0.23 TCGA-BR-6852-01 20 61512757 61512757 C A DIDO1 Silent p.S1517S 0.13 TCGA-BR-6852-01 20 61834968 61834968 A G YTHDF1 Silent p.P108P 0.18 TCGA-BR-6852-01 20 62493849 62493849 G A ABHD16B Missense_Mutation p.R319H 0.28 deleterious(0) probably_damaging(1) TCGA-BR-6852-01 20 62592694 62592694 C T ZNF512B Missense_Mutation p.V799I 0.15 tolerated(0.07) probably_damaging(0.998) TCGA-BR-6852-01 20 62595228 62595228 G A ZNF512B Missense_Mutation p.R507C 0.12 deleterious(0) possibly_damaging(0.88) TCGA-BR-6852-01 20 62705215 62705217 GGA - RGS19 In_Frame_Del p.S215del 0.20 TCGA-BR-6852-01 20 6759223 6759223 C T BMP2 Silent p.F226F 0.22 TCGA-BR-6852-01 21 16336948 16336948 T - NRIP1 3'UTR 0.19 TCGA-BR-6852-01 21 18933045 18933045 A - CXADR Frame_Shift_Del p.N201Mfs*27 0.15 TCGA-BR-6852-01 21 19628904 19628904 G T CHODL Missense_Mutation p.S53I 0.16 deleterious(0.02) possibly_damaging(0.702) TCGA-BR-6852-01 21 32492823 32492823 C T TIAM1 Missense_Mutation p.A1547T 0.13 tolerated_low_confidence(0.22) benign(0.009) TCGA-BR-6852-01 21 32590005 32590005 C T TIAM1 Missense_Mutation p.R669H 0.07 deleterious(0) probably_damaging(0.945) TCGA-BR-6852-01 21 34399407 34399407 G A OLIG2 Silent p.S79S 0.17 TCGA-BR-6852-01 21 38524243 38524243 A - TTC3 Frame_Shift_Del p.E779Kfs*5 0.27 TCGA-BR-6852-01 21 42694775 42694775 G - FAM3B Intron 0.16 TCGA-BR-6852-01 21 43274836 43274836 G A PRDM15 Missense_Mutation p.A492V 0.17 tolerated_low_confidence(0.32) benign(0.179) TCGA-BR-6852-01 21 43906550 43906550 C T RSPH1 Missense_Mutation p.R99Q 0.14 deleterious(0) probably_damaging(0.959) TCGA-BR-6852-01 21 45494326 45494326 G T TRAPPC10 Missense_Mutation p.G387V 0.17 deleterious(0) probably_damaging(0.969) TCGA-BR-6852-01 21 45811295 45811295 C - TRPM2 Frame_Shift_Del p.S529Pfs*74 0.18 TCGA-BR-6852-01 21 46320303 46320303 C T ITGB2 Missense_Mutation p.A277T 0.15 deleterious(0.03) benign(0.065) TCGA-BR-6852-01 21 47832899 47832899 G A PCNT Missense_Mutation p.G2048D 0.18 benign(0.012) TCGA-BR-6852-01 22 17618867 17618867 G A CECR5 3'UTR 0.23 TCGA-BR-6852-01 22 18979498 18979498 G A DGCR5 RNA 0.10 TCGA-BR-6852-01 22 19967605 19967605 G A ARVCF Missense_Mutation p.P353S 0.21 deleterious(0.04) probably_damaging(0.998) TCGA-BR-6852-01 22 20073609 20073609 A G DGCR8 Silent p.Q41Q 0.12 TCGA-BR-6852-01 22 20918760 20918760 G T MED15 Missense_Mutation p.A159S 0.18 tolerated_low_confidence(0.73) unknown(0) TCGA-BR-6852-01 22 21138420 21138420 G - SERPIND1 Frame_Shift_Del p.G352Afs*5 0.18 TCGA-BR-6852-01 22 21329105 21329105 G T AIFM3 Missense_Mutation p.K240N 0.14 deleterious(0) probably_damaging(0.99) TCGA-BR-6852-01 22 22313552 22313552 C T TOP3B Silent p.K619K 0.09 TCGA-BR-6852-01 22 23055679 23055679 T C IGLV3-21 Silent p.D114D 0.16 TCGA-BR-6852-01 22 25756037 25756037 G A LRP5L Missense_Mutation p.T8M 0.21 deleterious(0) probably_damaging(0.994) TCGA-BR-6852-01 22 26423135 26423135 C A MYO18B Missense_Mutation p.L2399I 0.18 deleterious(0.01) possibly_damaging(0.713) TCGA-BR-6852-01 22 27012154 27012154 C T CRYBB1 Missense_Mutation p.V44M 0.13 tolerated(0.23) benign(0.357) TCGA-BR-6852-01 22 29444461 29444461 T C ZNRF3 Missense_Mutation p.C333R 0.13 deleterious(0) probably_damaging(1) TCGA-BR-6852-01 22 30660117 30660117 C - OSM Frame_Shift_Del p.A172Pfs*57 0.09 TCGA-BR-6852-01 22 30762081 30762081 G A CCDC157 Missense_Mutation p.R31H 0.17 tolerated(0.06) benign(0.006) TCGA-BR-6852-01 22 31285560 31285560 C T OSBP2 Silent p.S520S 0.04 TCGA-BR-6852-01 22 31302253 31302253 C T OSBP2 Missense_Mutation p.A893V 0.14 tolerated(0.68) benign(0.085) TCGA-BR-6852-01 22 32587176 32587176 G A RFPL2 Silent p.R240R 0.17 TCGA-BR-6852-01 22 35783002 35783002 C T HMOX1 Silent p.L157L 0.07 TCGA-BR-6852-01 22 37693679 37693679 C T CYTH4 Silent p.G103G 0.20 TCGA-BR-6852-01 22 37966699 37966699 G A LGALS2 Missense_Mutation p.H45Y 0.22 deleterious(0) probably_damaging(1) TCGA-BR-6852-01 22 38055298 38055298 A C PDXP Missense_Mutation p.E170A 0.13 tolerated(0.15) benign(0.002) TCGA-BR-6852-01 22 38620838 38620838 G A TMEM184B Silent p.H312H 0.11 TCGA-BR-6852-01 22 38689287 38689287 C A CSNK1E 3'UTR 0.17 TCGA-BR-6852-01 22 40801671 40801671 C T SGSM3 Silent p.L213L 0.17 TCGA-BR-6852-01 22 41533773 41533773 G A EP300 Missense_Mutation p.R580Q 0.17 benign(0.133) TCGA-BR-6852-01 22 41545050 41545050 C T EP300 Silent p.G750G 0.28 TCGA-BR-6852-01 22 43735227 43735227 C T SCUBE1 Missense_Mutation p.D35N 0.20 tolerated(0.07) possibly_damaging(0.898) TCGA-BR-6852-01 22 43926830 43926830 C T EFCAB6 Silent p.A1416A 0.06 TCGA-BR-6852-01 22 46679905 46679905 C A TTC38 Missense_Mutation p.H257Q 0.04 deleterious(0) possibly_damaging(0.899) TCGA-BR-6852-01 2 10022916 10022916 A G TAF1B Silent p.R263R 0.20 TCGA-BR-6852-01 2 103130652 103130652 G T SLC9A4 Missense_Mutation p.A555S 0.19 deleterious(0) possibly_damaging(0.772) TCGA-BR-6852-01 2 109411080 109411080 G T CCDC138 Missense_Mutation p.S160I 0.16 tolerated(0.16) possibly_damaging(0.607) TCGA-BR-6852-01 2 111562961 111562961 G A ACOXL Missense_Mutation p.G248S 0.12 tolerated(0.32) benign(0.212) TCGA-BR-6852-01 2 113069467 113069467 A C ZC3H6 Missense_Mutation p.T234P 0.17 tolerated(0.39) benign(0.146) TCGA-BR-6852-01 2 113146043 113146043 T C RGPD8 Silent p.V1493V 0.09 TCGA-BR-6852-01 2 120836150 120836150 T - EPB41L5 Frame_Shift_Del p.W268Gfs*4 0.17 TCGA-BR-6852-01 2 121106806 121106806 C T INHBB Missense_Mutation p.R194W 0.13 deleterious(0) probably_damaging(0.997) TCGA-BR-6852-01 2 121746625 121746625 C T GLI2 Silent p.D1045D 0.28 TCGA-BR-6852-01 2 129025949 129025949 G A HS6ST1 Silent p.N341N 0.14 TCGA-BR-6852-01 2 131688588 131688588 T C ARHGEF4 Missense_Mutation p.F20L 0.16 tolerated_low_confidence(0.72) benign(0) TCGA-BR-6852-01 2 132021260 132021260 G - POTEE Frame_Shift_Del p.G746Afs*20 0.11 TCGA-BR-6852-01 2 135628620 135628620 C T ACMSD Silent p.F222F 0.12 TCGA-BR-6852-01 2 135630090 135630090 G A ACMSD Missense_Mutation p.R243H 0.15 deleterious(0.04) probably_damaging(0.996) TCGA-BR-6852-01 2 135848570 135848570 T C RAB3GAP1 Silent p.G51G 0.19 TCGA-BR-6852-01 2 143718341 143718341 T C KYNU Splice_Site p.X243_splice 0.18 TCGA-BR-6852-01 2 148683686 148683686 A - ACVR2A Frame_Shift_Del p.K437Rfs*5 0.29 TCGA-BR-6852-01 2 152374867 152374867 G T NEB Missense_Mutation p.L7589I 0.15 benign(0.22) TCGA-BR-6852-01 2 152427010 152427010 C T NEB Splice_Site p.X5706_splice 0.13 TCGA-BR-6852-01 2 154334943 154334943 G A RPRM Missense_Mutation p.P46L 0.18 tolerated(0.06) benign(0) TCGA-BR-6852-01 2 155555820 155555820 G A KCNJ3 Missense_Mutation p.G178D 0.19 deleterious(0) probably_damaging(1) TCGA-BR-6852-01 2 161029225 161029225 C T ITGB6 Missense_Mutation p.R259Q 0.15 deleterious(0) probably_damaging(1) TCGA-BR-6852-01 2 162280612 162280612 G A TBR1 Silent p.S641S 0.33 TCGA-BR-6852-01 2 166243339 166243339 G T SCN2A Missense_Mutation p.M1545I 0.20 deleterious(0) benign(0.287) TCGA-BR-6852-01 2 168114854 168114854 T C XIRP2 3'UTR 0.05 TCGA-BR-6852-01 2 175436475 175436475 C T WIPF1 Missense_Mutation p.R353H 0.10 tolerated(0.07) probably_damaging(0.976) TCGA-BR-6852-01 2 175666460 175666460 G A CHN1 Missense_Mutation p.R395W 0.14 deleterious(0.04) possibly_damaging(0.773) TCGA-BR-6852-01 2 175677082 175677082 G A CHN1 Missense_Mutation p.R281W 0.20 deleterious(0) probably_damaging(0.998) TCGA-BR-6852-01 2 176995458 176995458 C - HOXD8 Frame_Shift_Del p.C124Afs*53 0.21 TCGA-BR-6852-01 2 177054043 177054043 G A HOXD1 Missense_Mutation p.D172N 0.18 tolerated(0.18) probably_damaging(0.943) TCGA-BR-6852-01 2 179350390 179350390 T G PLEKHA3 Silent p.V21V 0.20 TCGA-BR-6852-01 2 179365829 179365829 G A PLEKHA3 Missense_Mutation p.R234Q 0.07 tolerated_low_confidence(0.15) benign(0.007) TCGA-BR-6852-01 2 179479312 179479312 A T TTN Missense_Mutation p.V16310D 0.12 TCGA-BR-6852-01 2 179501146 179501146 T C TTN Missense_Mutation p.T13770A 0.19 TCGA-BR-6852-01 2 179594876 179594876 C T TTN Missense_Mutation p.C6084Y 0.23 TCGA-BR-6852-01 2 179605699 179605699 T G TTN Missense_Mutation p.E4087D 0.14 TCGA-BR-6852-01 2 179641123 179641123 G T TTN Missense_Mutation p.A1823D 0.16 TCGA-BR-6852-01 2 185801192 185801192 G T ZNF804A Nonsense_Mutation p.G357* 0.22 TCGA-BR-6852-01 2 189929324 189929324 C - COL5A2 Frame_Shift_Del p.D559Ifs*16 0.18 TCGA-BR-6852-01 2 191874714 191874714 C T STAT1 Missense_Mutation p.E6K 0.21 tolerated(0.14) benign(0.011) TCGA-BR-6852-01 2 196749503 196749503 C A DNAH7 Missense_Mutation p.V1857F 0.23 tolerated(0.08) benign(0.024) TCGA-BR-6852-01 2 197986170 197986170 G A ANKRD44 Silent p.N264N 0.21 TCGA-BR-6852-01 2 202005127 202005128 - A CFLAR Frame_Shift_Ins p.S193Efs*8 0.16 TCGA-BR-6852-01 2 202136270 202136270 A C CASP8 Missense_Mutation p.S172R 0.25 deleterious(0.03) benign(0.003) TCGA-BR-6852-01 2 20232951 20232951 A G LAPTM4A 3'UTR 0.12 TCGA-BR-6852-01 2 204354393 204354393 C A RAPH1 Missense_Mutation p.A216S 0.07 possibly_damaging(0.687) TCGA-BR-6852-01 2 206874385 206874386 - G INO80D Frame_Shift_Ins p.Q559Pfs*39 0.12 TCGA-BR-6852-01 2 207172264 207172264 T C ZDBF2 Silent p.S1004S 0.16 TCGA-BR-6852-01 2 215884381 215884381 G A ABCA12 Missense_Mutation p.A476V 0.20 tolerated(0.16) benign(0.008) TCGA-BR-6852-01 2 219146888 219146888 A G TMBIM1 5'UTR 0.28 TCGA-BR-6852-01 2 219527931 219527931 T C BCS1L Missense_Mutation p.L361P 0.14 deleterious(0.02) probably_damaging(0.928) TCGA-BR-6852-01 2 219825256 219825256 C T CDK5R2 Silent p.F238F 0.18 TCGA-BR-6852-01 2 220355249 220355249 C T SPEG Silent p.L3014L 0.14 TCGA-BR-6852-01 2 220404687 220404687 C T CHPF Silent p.V582V 0.16 TCGA-BR-6852-01 2 220413838 220413838 G A TMEM198 Intron 0.18 TCGA-BR-6852-01 2 226446717 226446717 C T NYAP2 Missense_Mutation p.P195L 0.18 deleterious(0) probably_damaging(0.998) TCGA-BR-6852-01 2 227663080 227663080 C T IRS1 Silent p.A125A 0.14 TCGA-BR-6852-01 2 227919390 227919390 C T COL4A4 Missense_Mutation p.G927E 0.14 unknown(0) TCGA-BR-6852-01 2 230650558 230650558 C T TRIP12 Missense_Mutation p.R1595Q 0.15 deleterious(0.01) probably_damaging(0.978) TCGA-BR-6852-01 2 231042289 231042289 G A SP110 Missense_Mutation p.R519C 0.03 tolerated(0.18) possibly_damaging(0.835) TCGA-BR-6852-01 2 231134619 231134619 A G SP140 Silent p.P465P 0.06 TCGA-BR-6852-01 2 233398812 233398812 C T CHRND Missense_Mutation p.R407W 0.19 deleterious(0) probably_damaging(1) TCGA-BR-6852-01 2 233433793 233433793 C T EIF4E2 3'UTR 0.23 TCGA-BR-6852-01 2 233684582 233684582 C T GIGYF2 Nonsense_Mutation p.R827* 0.12 TCGA-BR-6852-01 2 236403404 236403404 C A AGAP1 Missense_Mutation p.P25H 0.10 deleterious(0) probably_damaging(0.996) TCGA-BR-6852-01 2 238285718 238285718 C T COL6A3 Missense_Mutation p.A923T 0.15 probably_damaging(0.99) TCGA-BR-6852-01 2 238287277 238287277 A G COL6A3 Splice_Site p.X833_splice 0.15 TCGA-BR-6852-01 2 239306240 239306240 C T TRAF3IP1 Silent p.D610D 0.10 TCGA-BR-6852-01 2 242076594 242076594 C T PASK Missense_Mutation p.S321N 0.20 tolerated(0.24) benign(0.311) TCGA-BR-6852-01 2 242170236 242170236 C T HDLBP Missense_Mutation p.V1138I 0.14 tolerated(0.25) benign(0.027) TCGA-BR-6852-01 2 242432348 242432348 A G FARP2 Missense_Mutation p.Q931R 0.08 deleterious(0) possibly_damaging(0.906) TCGA-BR-6852-01 2 242432431 242432433 TTC - FARP2 In_Frame_Del p.F960del 0.12 TCGA-BR-6852-01 2 242437662 242437662 G - STK25 Frame_Shift_Del p.H340Qfs*65 0.21 TCGA-BR-6852-01 2 242815428 242815428 G A CXXC11 3'UTR 0.16 TCGA-BR-6852-01 2 25965810 25965810 G A ASXL2 Silent p.G1132G 0.17 TCGA-BR-6852-01 2 31360851 31360851 C T GALNT14 Silent p.P34P 0.22 TCGA-BR-6852-01 2 3743890 3743890 G A ALLC Silent p.A231A 0.15 TCGA-BR-6852-01 2 39893185 39893185 C T TMEM178A Missense_Mutation p.T24M 0.17 tolerated(0.18) benign(0.398) TCGA-BR-6852-01 2 40657279 40657279 C A SLC8A1 Nonsense_Mutation p.E48* 0.13 TCGA-BR-6852-01 2 44051074 44051074 G A ABCG5 Silent p.G434G 0.15 TCGA-BR-6852-01 2 45235980 45235980 T C SIX2 Silent p.A90A 0.15 TCGA-BR-6852-01 2 46583304 46583304 G A EPAS1 Missense_Mutation p.E78K 0.16 tolerated(0.08) benign(0.001) TCGA-BR-6852-01 2 48066832 48066832 T C FBXO11 Silent p.R103R 0.13 TCGA-BR-6852-01 2 55490842 55490842 C T MTIF2 Nonsense_Mutation p.W51* 0.11 TCGA-BR-6852-01 2 60688703 60688703 C T BCL11A Silent p.P448P 0.17 TCGA-BR-6852-01 2 65571937 65571937 G A SPRED2 Silent p.R40R 0.14 TCGA-BR-6852-01 2 69748037 69748037 C A AAK1 Missense_Mutation p.G380V 0.21 deleterious(0.02) unknown(0) TCGA-BR-6852-01 2 71360643 71360643 T - MPHOSPH10 Frame_Shift_Del p.F237Lfs*28 0.21 TCGA-BR-6852-01 2 71365669 71365669 C T MPHOSPH10 Missense_Mutation p.P383L 0.22 deleterious(0) probably_damaging(0.99) TCGA-BR-6852-01 2 74749707 74749707 C A DQX1 Missense_Mutation p.A499S 0.15 deleterious(0.01) benign(0.14) TCGA-BR-6852-01 2 77746748 77746748 C T LRRTM4 Missense_Mutation p.G83S 0.18 tolerated(0.18) possibly_damaging(0.596) TCGA-BR-6852-01 2 85581587 85581587 G T RETSAT Missense_Mutation p.A15D 0.18 tolerated(0.15) unknown(0) TCGA-BR-6852-01 2 85604483 85604483 A G ELMOD3 Silent p.T208T 0.09 TCGA-BR-6852-01 2 86712114 86712114 G A KDM3A Nonsense_Mutation p.W1048* 0.09 TCGA-BR-6852-01 2 97909600 97909600 A - ANKRD36 Frame_Shift_Del p.K1470Rfs*17 0.09 TCGA-BR-6852-01 2 99226067 99226067 A G UNC50 Intron 0.10 TCGA-BR-6852-01 2 99985020 99985021 - A EIF5B Frame_Shift_Ins p.I454Nfs*8 0.21 TCGA-BR-6852-01 3 100986374 100986374 A G IMPG2 Missense_Mutation p.S297P 0.14 tolerated(0.24) benign(0.015) TCGA-BR-6852-01 3 107492284 107492284 A - BBX Frame_Shift_Del p.A574Qfs*4 0.15 TCGA-BR-6852-01 3 109027089 109027089 G A DPPA2 Missense_Mutation p.R150C 0.16 tolerated(0.18) benign(0) TCGA-BR-6852-01 3 113850211 113850211 G A DRD3 Missense_Mutation p.R254C 0.14 tolerated(0.06) benign(0.443) TCGA-BR-6852-01 3 119534274 119534274 C A NR1I2 Missense_Mutation p.L387I 0.16 tolerated(0.28) possibly_damaging(0.882) TCGA-BR-6852-01 3 122345823 122345823 A - PARP15 Frame_Shift_Del p.R463Efs*7 0.14 TCGA-BR-6852-01 3 12458573 12458573 A G PPARG Missense_Mutation p.E397G 0.23 deleterious(0.05) possibly_damaging(0.881) TCGA-BR-6852-01 3 127335932 127335932 G T MCM2 Nonsense_Mutation p.G582* 0.21 TCGA-BR-6852-01 3 129221612 129221612 G A IFT122 Missense_Mutation p.A863T 0.05 deleterious(0) probably_damaging(0.999) TCGA-BR-6852-01 3 129810159 129810159 C A RP11-93K22.13 Intron 0.17 TCGA-BR-6852-01 3 130287372 130287372 T C COL6A6 Silent p.V775V 0.20 TCGA-BR-6852-01 3 132322160 132322160 C A ACAD11 Missense_Mutation p.A512S 0.14 deleterious(0.01) possibly_damaging(0.722) TCGA-BR-6852-01 3 143708636 143708636 A G C3orf58 Missense_Mutation p.K416E 0.05 tolerated(0.34) benign(0.061) TCGA-BR-6852-01 3 147114073 147114073 C A ZIC4 Missense_Mutation p.R135L 0.21 deleterious(0.01) benign(0.093) TCGA-BR-6852-01 3 15045441 15045441 G A NR2C2 Missense_Mutation p.R7H 0.15 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-BR-6852-01 3 150931269 150931269 A G P2RY14 Missense_Mutation p.F279S 0.19 tolerated(0.58) possibly_damaging(0.783) TCGA-BR-6852-01 3 152165478 152165478 G A MBNL1 Missense_Mutation p.A311T 0.12 tolerated(0.68) unknown(0) TCGA-BR-6852-01 3 154006670 154006670 T C DHX36 Silent p.R672R 0.12 TCGA-BR-6852-01 3 156877202 156877203 TG - CCNL1 Frame_Shift_Del p.H123Qfs*11 0.13 TCGA-BR-6852-01 3 15755084 15755084 G A ANKRD28 Silent p.G350G 0.13 TCGA-BR-6852-01 3 165548072 165548072 C T BCHE Silent p.L250L 0.08 TCGA-BR-6852-01 3 169381201 169381201 T - MECOM 5'UTR 0.33 TCGA-BR-6852-01 3 179131207 179131207 G C GNB4 Missense_Mutation p.A231G 0.18 deleterious(0.05) possibly_damaging(0.675) TCGA-BR-6852-01 3 182872079 182872079 T - LAMP3 Frame_Shift_Del p.K50Nfs*15 0.19 TCGA-BR-6852-01 3 183521825 183521825 G A YEATS2 Silent p.K1211K 0.17 TCGA-BR-6852-01 3 183778041 183778041 G T HTR3C Missense_Mutation p.W415C 0.08 deleterious(0.01) possibly_damaging(0.766) TCGA-BR-6852-01 3 184064539 184064539 C T CLCN2 Missense_Mutation p.R851Q 0.13 deleterious(0.05) probably_damaging(0.938) TCGA-BR-6852-01 3 184290449 184290449 G A EPHB3 Missense_Mutation p.R114H 0.10 deleterious(0) probably_damaging(1) TCGA-BR-6852-01 3 185165720 185165720 A - MAP3K13 Frame_Shift_Del p.V334Lfs*14 0.15 TCGA-BR-6852-01 3 189689785 189689785 T C LEPREL1 Missense_Mutation p.R571G 0.12 tolerated(0.86) benign(0.004) TCGA-BR-6852-01 3 195515860 195515860 G A MUC4 Missense_Mutation p.A864V 0.16 unknown(0) TCGA-BR-6852-01 3 195974240 195974240 G A PCYT1A Missense_Mutation p.R162W 0.20 deleterious(0) probably_damaging(0.941) TCGA-BR-6852-01 3 197593070 197593070 T G LRCH3 Missense_Mutation p.V618G 0.16 tolerated(0.22) benign(0.001) TCGA-BR-6852-01 3 22424081 22424081 T - HMGB1P5 RNA 0.19 TCGA-BR-6852-01 3 38052911 38052911 G T PLCD1 Missense_Mutation p.S216Y 0.29 tolerated(0.59) benign(0.027) TCGA-BR-6852-01 3 38404473 38404473 T A XYLB Missense_Mutation p.F86I 0.18 deleterious(0.01) benign(0.223) TCGA-BR-6852-01 3 39174572 39174572 G A TTC21A Silent p.K871K 0.17 TCGA-BR-6852-01 3 42264629 42264629 C T TRAK1 Silent p.Y754Y 0.23 TCGA-BR-6852-01 3 42701286 42701286 T A ZBTB47 Missense_Mutation p.L480Q 0.16 deleterious(0.03) unknown(0) TCGA-BR-6852-01 3 42777197 42777197 A G CCDC13 Splice_Site p.X457_splice 0.19 TCGA-BR-6852-01 3 42915688 42915688 C T CYP8B1 3'UTR 0.33 TCGA-BR-6852-01 3 44598765 44598765 C T ZKSCAN7 Missense_Mutation p.R76W 0.23 deleterious(0.02) probably_damaging(1) TCGA-BR-6852-01 3 44816853 44816853 C T KIF15 Missense_Mutation p.T57M 0.22 deleterious(0.01) probably_damaging(0.924) TCGA-BR-6852-01 3 46008021 46008021 G A FYCO1 Silent p.D935D 0.21 TCGA-BR-6852-01 3 4709083 4709083 G T ITPR1 Missense_Mutation p.G564V 0.18 deleterious(0.01) possibly_damaging(0.85) TCGA-BR-6852-01 3 47453286 47453286 G A PTPN23 Missense_Mutation p.R1301H 0.07 possibly_damaging(0.861) TCGA-BR-6852-01 3 49135641 49135641 A - QARS Frame_Shift_Del p.L712* 0.12 TCGA-BR-6852-01 3 49321537 49321537 G A USP4 Missense_Mutation p.A808V 0.15 deleterious(0) probably_damaging(0.997) TCGA-BR-6852-01 3 49689135 49689135 C T BSN Missense_Mutation p.P716S 0.21 unknown(0) TCGA-BR-6852-01 3 49850959 49850959 T C UBA7 Missense_Mutation p.T60A 0.16 deleterious(0.02) possibly_damaging(0.85) TCGA-BR-6852-01 3 49898646 49898646 T C CAMKV Missense_Mutation p.I177V 0.06 deleterious(0.03) probably_damaging(0.989) TCGA-BR-6852-01 3 50005642 50005642 C T RBM6 Nonsense_Mutation p.R262* 0.24 TCGA-BR-6852-01 3 51418626 51418626 G A DOCK3 Missense_Mutation p.R1910H 0.14 tolerated_low_confidence(0.08) probably_damaging(0.998) TCGA-BR-6852-01 3 51708379 51708379 C T TEX264 Missense_Mutation p.T20M 0.16 deleterious(0.02) unknown(0) TCGA-BR-6852-01 3 51746637 51746637 G A GRM2 Missense_Mutation p.R200H 0.17 tolerated(0.16) benign(0.117) TCGA-BR-6852-01 3 51746765 51746765 C T GRM2 Missense_Mutation p.R243C 0.23 deleterious(0) probably_damaging(0.993) TCGA-BR-6852-01 3 52941085 52941085 C A SFMBT1 Missense_Mutation p.K777N 0.13 tolerated(0.09) possibly_damaging(0.727) TCGA-BR-6852-01 3 56657046 56657046 A - FAM208A 3'UTR 0.40 TCGA-BR-6852-01 3 57913112 57913112 A G SLMAP Silent p.P811P 0.21 TCGA-BR-6852-01 3 69246143 69246143 G A FRMD4B Nonsense_Mutation p.Q334* 0.19 TCGA-BR-6852-01 3 73433872 73433872 G A PDZRN3 Silent p.S615S 0.18 TCGA-BR-6852-01 3 8590329 8590329 C T LMCD1 Missense_Mutation p.R155C 0.06 deleterious(0) possibly_damaging(0.908) TCGA-BR-6852-01 3 95373869 95373869 A G MTHFD2P1 RNA 0.24 TCGA-BR-6852-01 3 9776020 9776020 C T BRPF1 Missense_Mutation p.R66C 0.17 deleterious(0) probably_damaging(0.989) TCGA-BR-6852-01 3 9776143 9776143 G A BRPF1 Missense_Mutation p.V107I 0.16 tolerated(0.21) benign(0.014) TCGA-BR-6852-01 4 103866441 103866441 C T SLC9B1 Missense_Mutation p.A188T 0.13 tolerated(0.09) possibly_damaging(0.491) TCGA-BR-6852-01 4 106888380 106888380 C T NPNT Missense_Mutation p.P491S 0.18 tolerated(0.44) probably_damaging(1) TCGA-BR-6852-01 4 113346862 113346862 C T ALPK1 Nonsense_Mutation p.Q193* 0.08 TCGA-BR-6852-01 4 113567814 113567814 G A LARP7 Missense_Mutation p.R132H 0.12 deleterious(0.04) benign(0.198) TCGA-BR-6852-01 4 118975002 118975002 A C NDST3 5'UTR 0.09 TCGA-BR-6852-01 4 119163293 119163293 A C NDST3 Silent p.S796S 0.15 TCGA-BR-6852-01 4 1207290 1207290 G A CTBP1 Missense_Mutation p.R333W 0.15 tolerated(0.09) benign(0.012) TCGA-BR-6852-01 4 122062982 122062982 G A TNIP3 Missense_Mutation p.R369W 0.18 tolerated(0.1) benign(0.409) TCGA-BR-6852-01 4 122589588 122589588 C T ANXA5 3'UTR 0.17 TCGA-BR-6852-01 4 123107276 123107276 T C KIAA1109 Silent p.L148L 0.17 TCGA-BR-6852-01 4 123275094 123275094 C T KIAA1109 Missense_Mutation p.R4743C 0.22 probably_damaging(0.985) TCGA-BR-6852-01 4 123868515 123868515 G A SPATA5 Missense_Mutation p.R529Q 0.21 deleterious(0) probably_damaging(0.974) TCGA-BR-6852-01 4 138451730 138451730 A G PCDH18 Silent p.L505L 0.16 TCGA-BR-6852-01 4 140624683 140624683 A - MGST2 Frame_Shift_Del p.K103Nfs*8 0.19 TCGA-BR-6852-01 4 147561442 147561442 G A POU4F2 Missense_Mutation p.A238T 0.12 tolerated_low_confidence(0.18) probably_damaging(0.959) TCGA-BR-6852-01 4 15063798 15063798 C T CPEB2 Nonsense_Mutation p.R931* 0.14 TCGA-BR-6852-01 4 153249385 153249385 G A FBXW7 Missense_Mutation p.R465C 0.12 deleterious(0) probably_damaging(1) TCGA-BR-6852-01 4 154625775 154625775 C A TLR2 Silent p.G572G 0.22 TCGA-BR-6852-01 4 155458569 155458569 C T PLRG1 Missense_Mutation p.A452T 0.22 tolerated(1) benign(0.111) TCGA-BR-6852-01 4 155459192 155459192 T A PLRG1 Missense_Mutation p.Q407L 0.13 deleterious(0.02) probably_damaging(0.999) TCGA-BR-6852-01 4 158281228 158281228 A G GRIA2 Missense_Mutation p.M742V 0.16 deleterious(0) probably_damaging(0.992) TCGA-BR-6852-01 4 166964495 166964495 G A TLL1 Missense_Mutation p.R483H 0.15 deleterious(0.04) benign(0.359) TCGA-BR-6852-01 4 170634343 170634343 C A CLCN3 Missense_Mutation p.L755I 0.20 tolerated(0.09) probably_damaging(0.992) TCGA-BR-6852-01 4 17493907 17493907 C T QDPR Missense_Mutation p.A165T 0.21 deleterious(0) possibly_damaging(0.69) TCGA-BR-6852-01 4 185941701 185941701 G A HELT Silent p.P253P 0.12 TCGA-BR-6852-01 4 2306637 2306637 C A ZFYVE28 Missense_Mutation p.S477I 0.14 deleterious_low_confidence(0.01) benign(0.142) TCGA-BR-6852-01 4 2831768 2831768 C - SH3BP2 Frame_Shift_Del p.V438Wfs*8 0.16 TCGA-BR-6852-01 4 38690460 38690460 A - KLF3 Frame_Shift_Del p.K106Nfs*21 0.13 TCGA-BR-6852-01 4 38691476 38691476 C - KLF3 Frame_Shift_Del p.P226Rfs*52 0.21 TCGA-BR-6852-01 4 39409172 39409172 A G KLB Silent p.A201A 0.12 TCGA-BR-6852-01 4 39458044 39458044 T C RPL9 Missense_Mutation p.R125G 0.23 tolerated(0.06) benign(0.004) TCGA-BR-6852-01 4 39482707 39482707 C T LIAS 3'Flank 0.16 TCGA-BR-6852-01 4 44450159 44450159 C A KCTD8 Nonsense_Mutation p.E128* 0.20 TCGA-BR-6852-01 4 44683221 44683221 G A GUF1 Splice_Site p.X169_splice 0.11 TCGA-BR-6852-01 4 47682178 47682178 T G CORIN Missense_Mutation p.K371T 0.10 deleterious(0.04) probably_damaging(0.999) TCGA-BR-6852-01 4 6474063 6474063 C T PPP2R2C 5'UTR 0.19 TCGA-BR-6852-01 4 68536191 68536191 C T UBA6 Silent p.T222T 0.12 TCGA-BR-6852-01 4 71346631 71346631 C T MUC7 Missense_Mutation p.P57L 0.04 tolerated(0.79) probably_damaging(0.946) TCGA-BR-6852-01 4 7802207 7802207 G A AFAP1 Missense_Mutation p.R410W 0.13 deleterious(0) probably_damaging(1) TCGA-BR-6852-01 4 79400796 79400796 G T FRAS1 Missense_Mutation p.K2789N 0.10 benign(0.018) TCGA-BR-6852-01 4 8398700 8398700 C A ACOX3 Missense_Mutation p.E340D 0.17 tolerated(1) benign(0.004) TCGA-BR-6852-01 4 84391425 84391425 G A FAM175A Missense_Mutation p.T136I 0.20 deleterious(0) probably_damaging(0.997) TCGA-BR-6852-01 4 90170138 90170138 C T GPRIN3 Missense_Mutation p.S375N 0.06 tolerated(0.55) benign(0.001) TCGA-BR-6852-01 4 94750381 94750382 - G ATOH1 Frame_Shift_Ins p.E104Gfs*96 0.09 TCGA-BR-6852-01 5 11364852 11364852 T C CTNND2 Missense_Mutation p.D443G 0.09 tolerated(0.29) benign(0.065) TCGA-BR-6852-01 5 126732274 126732274 A - MEGF10 Frame_Shift_Del p.N156Mfs*180 0.27 TCGA-BR-6852-01 5 131671563 131671563 C A SLC22A4 Silent p.T438T 0.18 TCGA-BR-6852-01 5 131819656 131819656 G T IRF1 Missense_Mutation p.P322H 0.12 deleterious_low_confidence(0) possibly_damaging(0.8) TCGA-BR-6852-01 5 132086527 132086527 C T SEPT8 3'UTR 0.21 TCGA-BR-6852-01 5 134871159 134871159 G C NEUROG1 Silent p.R74R 0.29 TCGA-BR-6852-01 5 13766156 13766156 T - DNAH5 Frame_Shift_Del p.S3344Afs*11 0.16 TCGA-BR-6852-01 5 137777118 137777118 G A REEP2 Silent p.T50T 0.24 TCGA-BR-6852-01 5 13817727 13817727 G A DNAH5 Silent p.D2306D 0.26 TCGA-BR-6852-01 5 13923470 13923470 G A DNAH5 Silent p.N119N 0.16 TCGA-BR-6852-01 5 139494404 139494404 A C PURA Missense_Mutation p.E213A 0.29 tolerated(0.08) possibly_damaging(0.566) TCGA-BR-6852-01 5 139946971 139946971 T C SLC35A4 Missense_Mutation p.W73R 0.18 tolerated(0.55) benign(0.002) TCGA-BR-6852-01 5 140188299 140188299 G A PCDHA4 Silent p.S509S 0.17 TCGA-BR-6852-01 5 140209639 140209639 G A PCDHA6 Missense_Mutation p.G655S 0.16 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BR-6852-01 5 140263299 140263299 G A PCDHA13 Silent p.A482A 0.12 TCGA-BR-6852-01 5 140263504 140263504 C T PCDHA13 Silent p.L551L 0.13 TCGA-BR-6852-01 5 140263536 140263536 C T PCDHA13 Silent p.N561N 0.14 TCGA-BR-6852-01 5 140346519 140346519 G A PCDHAC2 Silent p.A56A 0.27 TCGA-BR-6852-01 5 140475355 140475355 G T PCDHB2 Silent p.G327G 0.12 TCGA-BR-6852-01 5 140590109 140590109 G A PCDHB12 Missense_Mutation p.E544K 0.17 deleterious_low_confidence(0.01) benign(0.15) TCGA-BR-6852-01 5 140731683 140731683 C T PCDHGB1 Missense_Mutation p.T619M 0.22 deleterious(0) probably_damaging(1) TCGA-BR-6852-01 5 140754749 140754749 G A PCDHGA6 Missense_Mutation p.A367T 0.06 deleterious_low_confidence(0.01) possibly_damaging(0.477) TCGA-BR-6852-01 5 140794611 140794611 G - PCDHGA10 Frame_Shift_Del p.E625Sfs*23 0.16 TCGA-BR-6852-01 5 141385765 141385765 C T GNPDA1 Missense_Mutation p.C118Y 0.23 deleterious(0) probably_damaging(0.999) TCGA-BR-6852-01 5 149826448 149826448 C A RPS14 Missense_Mutation p.L76F 0.11 deleterious(0.03) possibly_damaging(0.831) TCGA-BR-6852-01 5 149915269 149915269 G A NDST1 Missense_Mutation p.G420D 0.07 tolerated(0.12) possibly_damaging(0.899) TCGA-BR-6852-01 5 150411891 150411891 G T TNIP1 Missense_Mutation p.S611R 0.09 tolerated_low_confidence(0.09) possibly_damaging(0.448) TCGA-BR-6852-01 5 150946553 150946553 T - FAT2 Frame_Shift_Del p.N647Tfs*8 0.16 TCGA-BR-6852-01 5 151170610 151170610 T C G3BP1 Missense_Mutation p.V113A 0.17 deleterious(0) possibly_damaging(0.662) TCGA-BR-6852-01 5 15500764 15500764 C T FBXL7 5'UTR 0.19 TCGA-BR-6852-01 5 15936751 15936751 T C FBXL7 Missense_Mutation p.L311P 0.14 deleterious(0) possibly_damaging(0.685) TCGA-BR-6852-01 5 161116141 161116141 A G GABRA6 Missense_Mutation p.I138V 0.16 deleterious(0.01) benign(0.098) TCGA-BR-6852-01 5 161494963 161494963 C T GABRG2 5'UTR 0.17 TCGA-BR-6852-01 5 16672919 16672919 T C MYO10 Missense_Mutation p.I1730V 0.15 tolerated(0.21) benign(0.005) TCGA-BR-6852-01 5 16701393 16701393 G A MYO10 Silent p.N1037N 0.14 TCGA-BR-6852-01 5 167589717 167589717 G A TENM2 Missense_Mutation p.V842I 0.17 tolerated(0.35) possibly_damaging(0.797) TCGA-BR-6852-01 5 169020375 169020375 G A SPDL1 Silent p.V118V 0.28 TCGA-BR-6852-01 5 169021259 169021259 G A SPDL1 Silent p.E214E 0.15 TCGA-BR-6852-01 5 171777412 171777412 C A SH3PXD2B Missense_Mutation p.G323W 0.08 deleterious(0) possibly_damaging(0.848) TCGA-BR-6852-01 5 174870015 174870015 G T DRD1 Missense_Mutation p.L30M 0.20 deleterious(0) probably_damaging(0.999) TCGA-BR-6852-01 5 175959004 175959004 C T RNF44 Splice_Site p.X99_splice 0.04 TCGA-BR-6852-01 5 176797920 176797920 C T RGS14 Missense_Mutation p.A381V 0.14 deleterious(0.02) benign(0.003) TCGA-BR-6852-01 5 177658502 177658503 - A PHYKPL Frame_Shift_Ins p.P28Sfs*6 0.14 TCGA-BR-6852-01 5 179150668 179150668 T C CANX Missense_Mutation p.V469A 0.13 deleterious(0.04) benign(0.345) TCGA-BR-6852-01 5 24509929 24509929 C T CDH10 Splice_Site p.X335_splice 0.25 TCGA-BR-6852-01 5 31983446 31983446 T C PDZD2 Missense_Mutation p.V221A 0.21 deleterious(0) probably_damaging(0.996) TCGA-BR-6852-01 5 33937788 33937788 G A RXFP3 Missense_Mutation p.G315R 0.40 tolerated(0.51) benign(0.005) TCGA-BR-6852-01 5 34945872 34945873 - A DNAJC21 Frame_Shift_Ins p.Q386Tfs*52 0.14 TCGA-BR-6852-01 5 37045628 37045628 T A NIPBL Missense_Mutation p.S2143T 0.17 deleterious(0.01) possibly_damaging(0.724) TCGA-BR-6852-01 5 41004956 41004956 T C MROH2B Missense_Mutation p.S1311G 0.14 tolerated(0.56) benign(0.098) TCGA-BR-6852-01 5 41018858 41018858 C A MROH2B Nonsense_Mutation p.G870* 0.19 TCGA-BR-6852-01 5 41160334 41160334 G A C6 Missense_Mutation p.P532S 0.15 deleterious(0.02) possibly_damaging(0.885) TCGA-BR-6852-01 5 45303873 45303873 A C HCN1 Missense_Mutation p.N482K 0.23 deleterious(0) probably_damaging(0.989) TCGA-BR-6852-01 5 54527374 54527374 C T CCNO Missense_Mutation p.M294I 0.24 tolerated(0.35) benign(0.016) TCGA-BR-6852-01 5 56168713 56168713 G A MAP3K1 Missense_Mutation p.V523I 0.12 tolerated(0.49) benign(0) TCGA-BR-6852-01 5 63256881 63256881 C T HTR1A Silent p.A222A 0.17 TCGA-BR-6852-01 5 64020168 64020168 A - SREK1IP1 3'UTR 0.14 TCGA-BR-6852-01 5 6739961 6739961 C A PAPD7 Missense_Mutation p.A85D 0.21 deleterious(0) benign(0.163) TCGA-BR-6852-01 5 68736316 68736316 A - MARVELD2 Frame_Shift_Del p.K517Rfs*16 0.23 TCGA-BR-6852-01 5 72419385 72419385 C T TMEM171 Missense_Mutation p.A62V 0.06 tolerated(0.2) benign(0.021) TCGA-BR-6852-01 5 82554470 82554470 G T XRCC4 Missense_Mutation p.Q289H 0.19 tolerated(0.53) probably_damaging(0.986) TCGA-BR-6852-01 5 86675571 86675571 A - RASA1 Frame_Shift_Del p.N838Mfs*4 0.16 TCGA-BR-6852-01 5 96116805 96116805 C T ERAP1 Missense_Mutation p.A849T 0.13 deleterious(0.03) probably_damaging(0.942) TCGA-BR-6852-01 5 98115291 98115291 C T RGMB Silent p.C89C 0.17 TCGA-BR-6852-01 6 101053556 101053556 G A ASCC3 Missense_Mutation p.R1689C 0.14 deleterious(0) probably_damaging(1) TCGA-BR-6852-01 6 102266333 102266333 G A GRIK2 Missense_Mutation p.R431H 0.23 deleterious(0.03) possibly_damaging(0.59) TCGA-BR-6852-01 6 10398529 10398529 G A TFAP2A 3'UTR 0.17 TCGA-BR-6852-01 6 107390838 107390838 G A BEND3 Silent p.G519G 0.20 TCGA-BR-6852-01 6 110300547 110300547 C T GPR6 Missense_Mutation p.L78F 0.18 deleterious(0.01) benign(0.055) TCGA-BR-6852-01 6 117010486 117010486 C A KPNA5 Missense_Mutation p.A3D 0.17 tolerated(0.16) benign(0.02) TCGA-BR-6852-01 6 117130556 117130556 A C GPRC6A Missense_Mutation p.V140G 0.17 deleterious(0.03) benign(0.108) TCGA-BR-6852-01 6 117248667 117248667 G A RFX6 Missense_Mutation p.C788Y 0.07 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BR-6852-01 6 12125503 12125503 T C HIVEP1 Silent p.N1825N 0.20 TCGA-BR-6852-01 6 121563353 121563353 T - TBC1D32 Frame_Shift_Del p.K717Nfs*29 0.17 TCGA-BR-6852-01 6 123319047 123319047 C A CLVS2 Missense_Mutation p.P42Q 0.05 deleterious(0.01) probably_damaging(0.997) TCGA-BR-6852-01 6 127796581 127796581 G T SOGA3 Missense_Mutation p.R864S 0.17 tolerated(0.14) benign(0.044) TCGA-BR-6852-01 6 130761596 130761596 G T TMEM200A Missense_Mutation p.G10V 0.04 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BR-6852-01 6 130762913 130762913 C G TMEM200A Missense_Mutation p.A449G 0.12 tolerated(0.3) benign(0.014) TCGA-BR-6852-01 6 13365634 13365634 C T GFOD1 Missense_Mutation p.G172S 0.15 tolerated(0.52) benign(0.389) TCGA-BR-6852-01 6 136698972 136698972 G A MAP7 Silent p.S246S 0.16 TCGA-BR-6852-01 6 136742893 136742893 G A MAP7 Missense_Mutation p.R60C 0.16 deleterious_low_confidence(0.04) benign(0.177) TCGA-BR-6852-01 6 138202374 138202374 C T TNFAIP3 Missense_Mutation p.A764V 0.15 tolerated(0.12) probably_damaging(1) TCGA-BR-6852-01 6 142741018 142741019 - T GPR126 Frame_Shift_Ins p.L1035Sfs*38 0.18 TCGA-BR-6852-01 6 143095843 143095843 T - HIVEP2 Frame_Shift_Del p.A12Lfs*25 0.18 TCGA-BR-6852-01 6 146351044 146351044 C A GRM1 Silent p.R131R 0.18 TCGA-BR-6852-01 6 146755373 146755374 - C GRM1 Frame_Shift_Ins p.K1011Qfs*94 0.11 TCGA-BR-6852-01 6 150005455 150005455 G - LATS1 Frame_Shift_Del p.P257Lfs*28 0.14 TCGA-BR-6852-01 6 151054849 151054849 G A PLEKHG1 Missense_Mutation p.S11N 0.14 deleterious(0) probably_damaging(0.997) TCGA-BR-6852-01 6 151089838 151089838 T - PLEKHG1 Frame_Shift_Del p.F160Lfs*28 0.20 TCGA-BR-6852-01 6 151789994 151789994 G A C6orf211 Missense_Mutation p.A359T 0.16 deleterious(0) possibly_damaging(0.491) TCGA-BR-6852-01 6 152734552 152734552 T G SYNE1 Missense_Mutation p.E2055D 0.19 possibly_damaging(0.676) TCGA-BR-6852-01 6 15520332 15520332 C T JARID2 Silent p.C1197C 0.18 TCGA-BR-6852-01 6 158900838 158900838 C T TULP4 Missense_Mutation p.S361L 0.13 tolerated(0.15) benign(0.275) TCGA-BR-6852-01 6 161560486 161560486 G A AGPAT4 Missense_Mutation p.T337M 0.12 tolerated(0.2) probably_damaging(0.987) TCGA-BR-6852-01 6 165715715 165715715 C T C6orf118 Silent p.T32T 0.12 TCGA-BR-6852-01 6 167570859 167570859 T C GPR31 Missense_Mutation p.E154G 0.12 tolerated(0.29) benign(0.105) TCGA-BR-6852-01 6 168289993 168289993 G A MLLT4 Nonsense_Mutation p.W332* 0.04 TCGA-BR-6852-01 6 168325729 168325729 A - MLLT4 Frame_Shift_Del p.K1014Sfs*20 0.11 TCGA-BR-6852-01 6 169637324 169637324 C - THBS2 Frame_Shift_Del p.G473Afs*277 0.14 TCGA-BR-6852-01 6 170105213 170105213 T - C6orf120 3'UTR 0.24 TCGA-BR-6852-01 6 24714607 24714607 T C C6orf62 Missense_Mutation p.K123R 0.15 tolerated(0.37) benign(0.046) TCGA-BR-6852-01 6 26452193 26452193 A G BTN3A3 Missense_Mutation p.T437A 0.14 tolerated(0.09) benign(0.171) TCGA-BR-6852-01 6 26501975 26501975 C T BTN1A1 Silent p.D79D 0.19 TCGA-BR-6852-01 6 27114195 27114195 G A HIST1H2BK 3'UTR 0.05 TCGA-BR-6852-01 6 28227433 28227433 G A NKAPL Missense_Mutation p.R95H 0.18 tolerated(0.22) unknown(0) TCGA-BR-6852-01 6 29323689 29323689 A G OR5V1 Missense_Mutation p.V95A 0.16 tolerated(1) benign(0.001) TCGA-BR-6852-01 6 29910376 29910378 GCC CT HLA-A Frame_Shift_Del p.A16Lfs*4 0.20 TCGA-BR-6852-01 6 29910672 29910672 C A HLA-A Missense_Mutation p.P71Q 0.30 deleterious_low_confidence(0) possibly_damaging(0.843) TCGA-BR-6852-01 6 30036905 30036905 G A PPP1R11 Missense_Mutation p.R68Q 0.24 deleterious(0.01) probably_damaging(0.936) TCGA-BR-6852-01 6 30530201 30530201 A - PRR3 Frame_Shift_Del p.K167Rfs*38 0.17 TCGA-BR-6852-01 6 31323371 31323371 T G HLA-B Splice_Site p.X207_splice 0.20 TCGA-BR-6852-01 6 31597533 31597533 G A PRRC2A Missense_Mutation p.R722Q 0.14 benign(0.238) TCGA-BR-6852-01 6 31713067 31713067 G A MSH5 Missense_Mutation p.S246N 0.20 tolerated(0.11) benign(0.079) TCGA-BR-6852-01 6 31747238 31747238 G A VARS Missense_Mutation p.R1122W 0.12 tolerated(0.06) probably_damaging(1) TCGA-BR-6852-01 6 32035685 32035685 C A TNXB Silent p.G2099G 0.14 TCGA-BR-6852-01 6 32805788 32805788 G - TAP2 Frame_Shift_Del p.L75* 0.16 TCGA-BR-6852-01 6 33137233 33137233 G A COL11A2 Missense_Mutation p.S1156L 0.20 unknown(0) TCGA-BR-6852-01 6 33543205 33543205 C T BAK1 Missense_Mutation p.V74M 0.28 deleterious(0) probably_damaging(0.975) TCGA-BR-6852-01 6 34497328 34497328 A G PACSIN1 Missense_Mutation p.K204R 0.10 tolerated(0.07) benign(0.159) TCGA-BR-6852-01 6 34512173 34512173 G - SPDEF Frame_Shift_Del p.D21Tfs*92 0.23 TCGA-BR-6852-01 6 35389648 35389648 C T PPARD Missense_Mutation p.R113C 0.18 deleterious(0) probably_damaging(0.97) TCGA-BR-6852-01 6 35473838 35473838 T C TULP1 Missense_Mutation p.K314R 0.05 tolerated(0.31) benign(0.012) TCGA-BR-6852-01 6 36842542 36842542 C T PPIL1 Missense_Mutation p.A3T 0.11 tolerated_low_confidence(0.08) benign(0.001) TCGA-BR-6852-01 6 3850592 3850592 G A FAM50B Missense_Mutation p.E183K 0.25 deleterious(0) probably_damaging(0.99) TCGA-BR-6852-01 6 38747811 38747811 C T DNAH8 Silent p.Y486Y 0.19 TCGA-BR-6852-01 6 40399747 40399747 G A LRFN2 Missense_Mutation p.T369M 0.17 deleterious(0.01) probably_damaging(0.996) TCGA-BR-6852-01 6 4052975 4052975 A - PRPF4B Frame_Shift_Del p.K780Nfs*13 0.14 TCGA-BR-6852-01 6 41617367 41617367 G - MDFI Frame_Shift_Del p.N92Tfs*86 0.14 TCGA-BR-6852-01 6 41773935 41773935 A C USP49 Missense_Mutation p.Y263D 0.04 deleterious(0) probably_damaging(0.999) TCGA-BR-6852-01 6 43515414 43515414 C T XPO5 Silent p.A697A 0.18 TCGA-BR-6852-01 6 44081538 44081538 T A MRPL14 3'UTR 0.17 TCGA-BR-6852-01 6 46659451 46659451 A C TDRD6 Missense_Mutation p.S1196R 0.16 tolerated(0.21) benign(0.258) TCGA-BR-6852-01 6 46679257 46679257 C T PLA2G7 Silent p.E213E 0.19 TCGA-BR-6852-01 6 47649996 47649996 C A GPR111 Silent p.G567G 0.11 TCGA-BR-6852-01 6 49416614 49416614 A G MUT Silent p.G453G 0.12 TCGA-BR-6852-01 6 52144285 52144285 C T MCM3 Missense_Mutation p.R260H 0.21 deleterious(0) probably_damaging(1) TCGA-BR-6852-01 6 7231972 7231972 G A RREB1 Missense_Mutation p.D1214N 0.18 deleterious(0.01) benign(0.378) TCGA-BR-6852-01 6 74078937 74078937 C T OOEP Missense_Mutation p.R121H 0.10 tolerated(0.09) benign(0.436) TCGA-BR-6852-01 6 7576615 7576615 C T DSP Missense_Mutation p.R907C 0.15 probably_damaging(0.989) TCGA-BR-6852-01 6 82950101 82950101 C T IBTK Missense_Mutation p.A35T 0.18 tolerated(0.22) benign(0.026) TCGA-BR-6852-01 6 96053719 96053719 A - MANEA Frame_Shift_Del p.K277Nfs*6 0.14 TCGA-BR-6852-01 7 100028470 100028470 G A MEPCE Missense_Mutation p.G277R 0.19 tolerated(0.13) probably_damaging(0.96) TCGA-BR-6852-01 7 100085812 100085812 C T NYAP1 Silent p.S156S 0.18 TCGA-BR-6852-01 7 100678887 100678887 C T MUC17 Missense_Mutation p.P1397L 0.13 unknown(0) TCGA-BR-6852-01 7 100732016 100732016 A C TRIM56 Missense_Mutation p.S475R 0.19 deleterious_low_confidence(0.03) benign(0.011) TCGA-BR-6852-01 7 100807605 100807605 C T VGF Missense_Mutation p.A174T 0.15 tolerated_low_confidence(0.08) benign(0.154) TCGA-BR-6852-01 7 102098052 102098052 G A ALKBH4 Missense_Mutation p.A233V 0.20 deleterious(0.02) possibly_damaging(0.824) TCGA-BR-6852-01 7 102982389 102982389 C T DNAJC2 Missense_Mutation p.C26Y 0.21 tolerated(0.75) benign(0.032) TCGA-BR-6852-01 7 103004675 103004675 C T PSMC2 Missense_Mutation p.A226V 0.14 deleterious(0) probably_damaging(0.999) TCGA-BR-6852-01 7 103293021 103293021 A G RELN Silent p.C580C 0.13 TCGA-BR-6852-01 7 105148756 105148756 C T PUS7 Silent p.G68G 0.14 TCGA-BR-6852-01 7 107738955 107738955 G A LAMB4 Missense_Mutation p.S418F 0.08 deleterious(0.02) possibly_damaging(0.697) TCGA-BR-6852-01 7 112108039 112108039 T - IFRD1 Frame_Shift_Del p.Y306Mfs*7 0.15 TCGA-BR-6852-01 7 112423832 112423832 C T TMEM168 Missense_Mutation p.R350H 0.06 deleterious(0) probably_damaging(0.998) TCGA-BR-6852-01 7 112555379 112555379 C T C7orf60 Missense_Mutation p.R95H 0.16 deleterious(0) probably_damaging(0.998) TCGA-BR-6852-01 7 113558541 113558541 C G PPP1R3A Missense_Mutation p.D171H 0.12 deleterious(0) probably_damaging(1) TCGA-BR-6852-01 7 117874902 117874902 G A ANKRD7 Missense_Mutation p.E148K 0.17 tolerated(1) benign(0.003) TCGA-BR-6852-01 7 121679626 121679626 A C PTPRZ1 Missense_Mutation p.N1874T 0.14 deleterious(0) possibly_damaging(0.857) TCGA-BR-6852-01 7 12263918 12263918 T C TMEM106B Silent p.L116L 0.03 TCGA-BR-6852-01 7 128850231 128850231 G A SMO Silent p.L498L 0.13 TCGA-BR-6852-01 7 130353669 130353669 C T TSGA13 3'UTR 0.30 TCGA-BR-6852-01 7 131982977 131982977 C T PLXNA4 Missense_Mutation p.R459Q 0.16 tolerated(0.06) probably_damaging(0.953) TCGA-BR-6852-01 7 138713581 138713581 C T ZC3HAV1L Silent p.R209R 0.18 TCGA-BR-6852-01 7 139611034 139611034 G T TBXAS1 Missense_Mutation p.G84C 0.14 deleterious(0) probably_damaging(1) TCGA-BR-6852-01 7 140402766 140402766 T C NDUFB2 Missense_Mutation p.F67L 0.17 deleterious(0) probably_damaging(0.999) TCGA-BR-6852-01 7 141464526 141464526 C T TAS2R3 Silent p.L190L 0.14 TCGA-BR-6852-01 7 141478798 141478798 C A TAS2R4 Silent p.I170I 0.14 TCGA-BR-6852-01 7 142605706 142605706 C T TRPV5 Missense_Mutation p.D722N 0.14 tolerated(0.22) benign(0.029) TCGA-BR-6852-01 7 149502667 149502667 G A SSPO RNA 0.22 TCGA-BR-6852-01 7 150846112 150846112 A G GBX1 Missense_Mutation p.L219P 0.18 tolerated(0.16) possibly_damaging(0.548) TCGA-BR-6852-01 7 1511207 1511207 C T INTS1 Silent p.S2085S 0.16 TCGA-BR-6852-01 7 151800311 151800311 G A GALNT11 Silent p.T178T 0.07 TCGA-BR-6852-01 7 151805218 151805218 G A GALNT11 Missense_Mutation p.V270M 0.17 deleterious(0.01) probably_damaging(0.977) TCGA-BR-6852-01 7 151845212 151845212 G A KMT2C Silent p.C4600C 0.13 TCGA-BR-6852-01 7 158695164 158695164 A - WDR60 Frame_Shift_Del p.K414Rfs*22 0.13 TCGA-BR-6852-01 7 21640745 21640745 A G DNAH11 Missense_Mutation p.K1125E 0.06 possibly_damaging(0.686) TCGA-BR-6852-01 7 26242614 26242614 A - CBX3 5'UTR p.M1? 0.21 TCGA-BR-6852-01 7 26404689 26404689 A - SNX10 Frame_Shift_Del p.N80Tfs*6 0.18 TCGA-BR-6852-01 7 26729927 26729927 T C SKAP2 Missense_Mutation p.Q284R 0.17 tolerated(0.49) benign(0.001) TCGA-BR-6852-01 7 27134370 27134370 G A HOXA1 Missense_Mutation p.R233C 0.20 deleterious(0) probably_damaging(0.988) TCGA-BR-6852-01 7 2962854 2962854 C - CARD11 Frame_Shift_Del p.G685Afs*31 0.09 TCGA-BR-6852-01 7 2984023 2984023 C T CARD11 Silent p.T169T 0.19 TCGA-BR-6852-01 7 40134237 40134238 - T CDK13 Frame_Shift_Ins p.P1401Sfs*20 0.16 TCGA-BR-6852-01 7 45699707 45699707 C T ADCY1 Silent p.Y458Y 0.17 TCGA-BR-6852-01 7 45725766 45725766 C T ADCY1 Missense_Mutation p.T760I 0.05 tolerated(0.11) benign(0.288) TCGA-BR-6852-01 7 48285466 48285466 G A ABCA13 Missense_Mutation p.A500T 0.11 benign(0) TCGA-BR-6852-01 7 65547883 65547883 C T ASL Missense_Mutation p.T103M 0.12 deleterious(0.02) benign(0.032) TCGA-BR-6852-01 7 72683331 72683331 A G GTF2IRD2P1 RNA 0.13 TCGA-BR-6852-01 7 73513447 73513447 G A LIMK1 Missense_Mutation p.V163I 0.15 tolerated(0.45) possibly_damaging(0.854) TCGA-BR-6852-01 7 7412846 7412846 T - COL28A1 Frame_Shift_Del p.V898Wfs*18 0.23 TCGA-BR-6852-01 7 7612723 7612723 G A MIOS Missense_Mutation p.R206H 0.25 deleterious(0.01) benign(0.119) TCGA-BR-6852-01 7 80285858 80285858 A C CD36 Missense_Mutation p.Q41H 0.13 deleterious(0) benign(0.409) TCGA-BR-6852-01 7 87073079 87073079 A T ABCB4 Missense_Mutation p.I377N 0.14 deleterious(0) probably_damaging(0.978) TCGA-BR-6852-01 7 99022445 99022445 G A ATP5J2-PTCD1 Silent p.D619D 0.16 TCGA-BR-6852-01 7 99955941 99955941 C T PILRB Silent p.L6L 0.13 TCGA-BR-6852-01 8 100523683 100523683 A G VPS13B Missense_Mutation p.T1551A 0.11 tolerated(0.22) benign(0.005) TCGA-BR-6852-01 8 101076163 101076163 A C RGS22 Missense_Mutation p.V278G 0.15 tolerated(0.41) benign(0) TCGA-BR-6852-01 8 101733798 101733798 G A PABPC1 Missense_Mutation p.A5V 0.20 tolerated(0.29) benign(0.003) TCGA-BR-6852-01 8 102731832 102731832 C T NCALD Missense_Mutation p.R9H 0.17 deleterious(0.03) benign(0.169) TCGA-BR-6852-01 8 10470612 10470612 G A RP1L1 Silent p.V332V 0.17 TCGA-BR-6852-01 8 105010452 105010452 C A RIMS2 Intron 0.22 TCGA-BR-6852-01 8 105263262 105263262 A - RIMS2 Frame_Shift_Del p.V1236Cfs*4 0.10 TCGA-BR-6852-01 8 110308619 110308619 T A NUDCD1 Missense_Mutation p.K151N 0.20 deleterious(0.01) benign(0.011) TCGA-BR-6852-01 8 113657441 113657441 T G CSMD3 Silent p.G1069G 0.20 TCGA-BR-6852-01 8 113966979 113966979 T C CSMD3 Missense_Mutation p.I452V 0.18 tolerated(0.32) possibly_damaging(0.669) TCGA-BR-6852-01 8 120114599 120114599 A G COLEC10 Missense_Mutation p.E102G 0.16 tolerated(0.07) benign(0.124) TCGA-BR-6852-01 8 124544175 124544175 G A FBXO32 Missense_Mutation p.A112V 0.19 deleterious(0) probably_damaging(0.999) TCGA-BR-6852-01 8 124797903 124797903 C T FAM91A1 Missense_Mutation p.A295V 0.05 deleterious(0) probably_damaging(0.999) TCGA-BR-6852-01 8 125464540 125464540 G T TRMT12 3'UTR 0.10 TCGA-BR-6852-01 8 12594548 12594548 C A LONRF1 Missense_Mutation p.E405D 0.15 tolerated(0.3) benign(0.002) TCGA-BR-6852-01 8 126114681 126114681 G T NSMCE2 Missense_Mutation p.G37C 0.11 deleterious(0) probably_damaging(0.996) TCGA-BR-6852-01 8 132952816 132952816 T C EFR3A Silent p.D27D 0.24 TCGA-BR-6852-01 8 136569807 136569807 T C KHDRBS3 Silent p.G196G 0.21 TCGA-BR-6852-01 8 142151514 142151514 G - DENND3 Intron 0.20 TCGA-BR-6852-01 8 142199100 142199100 G A DENND3 Missense_Mutation p.A954T 0.15 deleterious(0.03) possibly_damaging(0.493) TCGA-BR-6852-01 8 142367165 142367165 T C GPR20 Missense_Mutation p.S287G 0.14 tolerated(0.07) probably_damaging(0.999) TCGA-BR-6852-01 8 143867043 143867043 C T LY6D Missense_Mutation p.C38Y 0.15 deleterious(0) probably_damaging(0.951) TCGA-BR-6852-01 8 144662275 144662275 G A EEF1D Silent p.Y604Y 0.15 TCGA-BR-6852-01 8 144808253 144808253 C T FAM83H Missense_Mutation p.M1126I 0.17 tolerated(0.13) probably_damaging(0.985) TCGA-BR-6852-01 8 144885649 144885649 C T SCRIB Silent p.T1169T 0.13 TCGA-BR-6852-01 8 145559733 145559733 C T SCRT1 Silent p.A33A 0.18 TCGA-BR-6852-01 8 145638044 145638044 C T SLC39A4 Missense_Mutation p.A608T 0.08 tolerated(0.5) benign(0.061) TCGA-BR-6852-01 8 145640473 145640473 C T SLC39A4 Missense_Mutation p.R230H 0.16 tolerated(0.38) benign(0.009) TCGA-BR-6852-01 8 1728566 1728566 A C CLN8 Missense_Mutation p.T232P 0.11 tolerated(0.07) benign(0.209) TCGA-BR-6852-01 8 17579403 17579404 AC - MTUS1 Intron 0.10 TCGA-BR-6852-01 8 17817868 17817868 T C PCM1 Missense_Mutation p.L746P 0.22 deleterious(0) probably_damaging(1) TCGA-BR-6852-01 8 20107417 20107417 T G LZTS1 Missense_Mutation p.K536T 0.12 deleterious(0) probably_damaging(0.999) TCGA-BR-6852-01 8 20110667 20110667 C A LZTS1 Missense_Mutation p.D259Y 0.09 tolerated(0.17) benign(0.132) TCGA-BR-6852-01 8 21608373 21608373 C T GFRA2 Missense_Mutation p.C174Y 0.08 deleterious(0) possibly_damaging(0.871) TCGA-BR-6852-01 8 21985114 21985114 C T HR Missense_Mutation p.A281T 0.04 tolerated(1) benign(0.001) TCGA-BR-6852-01 8 22066962 22066962 C T BMP1 Silent p.C860C 0.13 TCGA-BR-6852-01 8 22473348 22473348 G A CCAR2 Missense_Mutation p.A511T 0.14 deleterious(0.02) benign(0.434) TCGA-BR-6852-01 8 24771399 24771399 G A NEFM Silent p.P31P 0.19 TCGA-BR-6852-01 8 27145310 27145310 C T TRIM35 Silent p.S413S 0.13 TCGA-BR-6852-01 8 28218564 28218564 C A ZNF395 Missense_Mutation p.E26D 0.22 tolerated(0.89) unknown(0) TCGA-BR-6852-01 8 28625830 28625830 T C INTS9 Missense_Mutation p.S604G 0.13 deleterious(0.04) benign(0.076) TCGA-BR-6852-01 8 29005051 29005051 G A KIF13B Missense_Mutation p.R628C 0.14 deleterious(0) possibly_damaging(0.886) TCGA-BR-6852-01 8 3008955 3008955 C A CSMD1 Missense_Mutation p.D1999Y 0.08 probably_damaging(0.967) TCGA-BR-6852-01 8 30958372 30958372 G A WRN Silent p.T663T 0.17 TCGA-BR-6852-01 8 35579836 35579836 A G UNC5D Missense_Mutation p.D409G 0.13 tolerated(0.63) benign(0.093) TCGA-BR-6852-01 8 37730005 37730005 G A RAB11FIP1 Missense_Mutation p.A772V 0.17 tolerated(0.5) benign(0.001) TCGA-BR-6852-01 8 42837826 42837826 A G HOOK3 Missense_Mutation p.T460A 0.09 deleterious(0.01) benign(0.325) TCGA-BR-6852-01 8 48825009 48825009 C T PRKDC Silent p.T965T 0.14 TCGA-BR-6852-01 8 52721799 52721799 G A PXDNL Missense_Mutation p.R36C 0.13 deleterious(0.01) benign(0.097) TCGA-BR-6852-01 8 55540178 55540178 G A RP1 Missense_Mutation p.A1246T 0.20 tolerated(1) benign(0.052) TCGA-BR-6852-01 8 55540519 55540519 T G RP1 Silent p.T1359T 0.10 TCGA-BR-6852-01 8 59728047 59728047 A C TOX Silent p.A414A 0.14 TCGA-BR-6852-01 8 61765914 61765914 G T CHD7 Missense_Mutation p.E2210D 0.15 benign(0.01) TCGA-BR-6852-01 8 66639191 66639191 A G PDE7A Missense_Mutation p.V280A 0.13 deleterious(0.02) benign(0.166) TCGA-BR-6852-01 8 74722818 74722818 C A UBE2W Missense_Mutation p.S126I 0.18 deleterious(0) benign(0.413) TCGA-BR-6852-01 8 77763477 77763477 A - ZFHX4 Frame_Shift_Del p.K1442Nfs*10 0.12 TCGA-BR-6852-01 8 86041489 86041489 A - LRRCC1 Frame_Shift_Del p.K502Nfs*2 0.13 TCGA-BR-6852-01 8 8998807 8998807 C T PPP1R3B Missense_Mutation p.A119T 0.11 tolerated(0.15) benign(0.001) TCGA-BR-6852-01 8 91078155 91078155 T C CALB1 Missense_Mutation p.T141A 0.14 tolerated(0.85) benign(0) TCGA-BR-6852-01 8 97157037 97157037 C T GDF6 Silent p.A374A 0.12 TCGA-BR-6852-01 8 98289908 98289908 A G TSPYL5 Silent p.A55A 0.33 TCGA-BR-6852-01 8 99168525 99168525 G A POP1 Missense_Mutation p.A769T 0.12 tolerated(0.37) benign(0.055) TCGA-BR-6852-01 8 99441338 99441339 - G KCNS2 Frame_Shift_Ins p.D379Gfs*34 0.11 TCGA-BR-6852-01 9 105757654 105757654 G C CYLC2 5'UTR 0.13 TCGA-BR-6852-01 9 108136891 108136891 G A SLC44A1 Missense_Mutation p.A503T 0.21 tolerated(0.49) probably_damaging(1) TCGA-BR-6852-01 9 109689690 109689690 C - ZNF462 Frame_Shift_Del p.R1168Gfs*9 0.24 TCGA-BR-6852-01 9 113445033 113445033 C A MUSK Silent p.S53S 0.23 TCGA-BR-6852-01 9 114484788 114484788 G T C9orf84 Missense_Mutation p.L614I 0.09 deleterious(0.01) benign(0.38) TCGA-BR-6852-01 9 117044798 117044798 C T COL27A1 Missense_Mutation p.P1278L 0.18 possibly_damaging(0.738) TCGA-BR-6852-01 9 120176829 120176829 G A ASTN2 Missense_Mutation p.R130C 0.07 deleterious_low_confidence(0) unknown(0) TCGA-BR-6852-01 9 123550083 123550083 A G FBXW2 Missense_Mutation p.Y152H 0.12 tolerated(0.09) benign(0.402) TCGA-BR-6852-01 9 127262986 127262986 C T NR5A1 Missense_Mutation p.A85T 0.15 tolerated(0.05) benign(0.329) TCGA-BR-6852-01 9 128104522 128104522 A - GAPVD1 Frame_Shift_Del p.K1025Nfs*109 0.22 TCGA-BR-6852-01 9 131559481 131559481 T G TBC1D13 Missense_Mutation p.S177R 0.12 tolerated(0.35) benign(0.001) TCGA-BR-6852-01 9 131857859 131857859 G A CRAT Silent p.F566F 0.12 TCGA-BR-6852-01 9 132382823 132382823 G - C9orf50 Frame_Shift_Del p.Q11Rfs*25 0.26 TCGA-BR-6852-01 9 133355136 133355136 G A ASS1 Missense_Mutation p.G241D 0.15 deleterious(0.04) benign(0.313) TCGA-BR-6852-01 9 134351425 134351425 C - PRRC2B Frame_Shift_Del p.P1305Hfs*161 0.14 TCGA-BR-6852-01 9 134354725 134354725 C T PRRC2B Silent p.D1615D 0.10 TCGA-BR-6852-01 9 135073569 135073569 G A NTNG2 Missense_Mutation p.G144S 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-BR-6852-01 9 135458245 135458245 G A BARHL1 Missense_Mutation p.A21T 0.07 tolerated_low_confidence(0.12) benign(0.019) TCGA-BR-6852-01 9 136031293 136031293 C T GBGT1 Silent p.E73E 0.18 TCGA-BR-6852-01 9 136501831 136501831 C T DBH Missense_Mutation p.A113V 0.14 tolerated(0.1) benign(0.166) TCGA-BR-6852-01 9 136901431 136901431 G A BRD3 Silent p.G553G 0.19 TCGA-BR-6852-01 9 137642653 137642653 C T COL5A1 Silent p.G529G 0.17 TCGA-BR-6852-01 9 139616671 139616671 G A FAM69B Missense_Mutation p.R134Q 0.18 deleterious(0.02) benign(0.048) TCGA-BR-6852-01 9 139641886 139641886 A C LCN6 Missense_Mutation p.S74A 0.09 tolerated(0.1) benign(0.315) TCGA-BR-6852-01 9 139732066 139732066 A G RABL6 Missense_Mutation p.R361G 0.21 deleterious(0) benign(0.291) TCGA-BR-6852-01 9 139749902 139749902 G A MAMDC4 Silent p.P434P 0.26 TCGA-BR-6852-01 9 140289857 140289857 C A EXD3 Splice_Site 0.30 TCGA-BR-6852-01 9 140356678 140356679 - G PNPLA7 Frame_Shift_Ins p.I1200Hfs*28 0.15 TCGA-BR-6852-01 9 140777297 140777297 C T CACNA1B Silent p.N164N 0.10 TCGA-BR-6852-01 9 14674235 14674235 A T ZDHHC21 Missense_Mutation p.V35D 0.07 deleterious(0) possibly_damaging(0.692) TCGA-BR-6852-01 9 14842654 14842654 C - FREM1 Frame_Shift_Del p.L470Sfs*56 0.16 TCGA-BR-6852-01 9 14859279 14859279 G A FREM1 Missense_Mutation p.A178V 0.19 tolerated(1) benign(0.001) TCGA-BR-6852-01 9 15214143 15214143 C T TTC39B Missense_Mutation p.R159H 0.18 tolerated(0.18) possibly_damaging(0.833) TCGA-BR-6852-01 9 17484353 17484353 A - CNTLN Frame_Shift_Del p.M1308* 0.17 TCGA-BR-6852-01 9 20622265 20622265 C G MLLT3 5'UTR 0.18 TCGA-BR-6852-01 9 27204916 27204916 G A TEK Silent p.A739A 0.12 TCGA-BR-6852-01 9 27524595 27524595 C A IFNK Missense_Mutation p.F87L 0.18 deleterious(0.03) possibly_damaging(0.843) TCGA-BR-6852-01 9 2811383 2811383 T C KIAA0020 Missense_Mutation p.H538R 0.04 tolerated(0.4) benign(0.001) TCGA-BR-6852-01 9 32550787 32550787 C T TOPORS Silent p.A61A 0.21 TCGA-BR-6852-01 9 35105125 35105125 C A FAM214B 3'UTR 0.27 TCGA-BR-6852-01 9 35396854 35396854 G A UNC13B Missense_Mutation p.V1069M 0.18 deleterious(0) probably_damaging(0.953) TCGA-BR-6852-01 9 35869700 35869700 C A OR13J1 Missense_Mutation p.R233S 0.23 deleterious(0.01) benign(0.005) TCGA-BR-6852-01 9 37740128 37740128 G A FRMPD1 Missense_Mutation p.V535I 0.18 tolerated(0.38) benign(0.003) TCGA-BR-6852-01 9 429720 429720 G A DOCK8 Missense_Mutation p.E1498K 0.17 deleterious(0) probably_damaging(0.998) TCGA-BR-6852-01 9 72046264 72046264 C A APBA1 Missense_Mutation p.Q831H 0.17 deleterious(0) probably_damaging(0.986) TCGA-BR-6852-01 9 74360375 74360375 G A TMEM2 Missense_Mutation p.S198F 0.16 deleterious(0.01) possibly_damaging(0.812) TCGA-BR-6852-01 9 77275630 77275630 A C RORB Missense_Mutation p.E245D 0.12 deleterious(0.03) benign(0.075) TCGA-BR-6852-01 9 77415342 77415342 C T TRPM6 Missense_Mutation p.R689H 0.07 deleterious(0.02) possibly_damaging(0.628) TCGA-BR-6852-01 9 79469112 79469112 G A PRUNE2 Missense_Mutation p.R17C 0.10 tolerated(0.12) benign(0.032) TCGA-BR-6852-01 9 84608351 84608351 T G SPATA31D1 Missense_Mutation p.V989G 0.15 deleterious(0.05) possibly_damaging(0.851) TCGA-BR-6852-01 9 94172784 94172784 T C NFIL3 Missense_Mutation p.E78G 0.04 deleterious(0) probably_damaging(0.975) TCGA-BR-6852-01 9 95738900 95738900 C - FGD3 Frame_Shift_Del p.Q123Rfs*51 0.13 TCGA-BR-6852-01 9 96080443 96080443 A T WNK2 3'UTR 0.27 TCGA-BR-6852-01 9 97062645 97062645 C T ZNF169 Missense_Mutation p.R269C 0.19 deleterious(0) probably_damaging(0.996) TCGA-BR-6852-01 9 97349699 97349699 C T FBP2 Missense_Mutation p.D75N 0.18 deleterious(0) possibly_damaging(0.758) TCGA-BR-6852-01 9 98643499 98643499 G A ERCC6L2 Missense_Mutation p.R143Q 0.20 tolerated(1) benign(0.001) TCGA-BR-6852-01 X 100078882 100078882 T C CSTF2 Missense_Mutation p.V151A 0.16 tolerated(0.19) probably_damaging(0.992) TCGA-BR-6852-01 X 100515504 100515504 G A DRP2 Missense_Mutation p.S923N 0.18 deleterious(0.02) benign(0.074) TCGA-BR-6852-01 X 100533995 100533996 - T TAF7L Frame_Shift_Ins p.S250Kfs*5 0.15 TCGA-BR-6852-01 X 101818384 101818384 T C NXF4 RNA 0.26 TCGA-BR-6852-01 X 101969892 101969892 T C GPRASP2 Missense_Mutation p.V32A 0.15 tolerated(0.11) benign(0.01) TCGA-BR-6852-01 X 102003967 102003967 A - BHLHB9 Frame_Shift_Del p.K17Rfs*21 0.09 TCGA-BR-6852-01 X 105178281 105178281 C T NRK Missense_Mutation p.A1116V 0.17 tolerated(0.12) benign(0.003) TCGA-BR-6852-01 X 105179301 105179301 C T NRK Silent p.C1214C 0.14 TCGA-BR-6852-01 X 105451074 105451074 A G MUM1L1 Missense_Mutation p.D550G 0.27 deleterious(0.01) probably_damaging(0.917) TCGA-BR-6852-01 X 106070528 106070528 C T TBC1D8B Silent p.C388C 0.14 TCGA-BR-6852-01 X 106236537 106236537 C A MORC4 Missense_Mutation p.E77D 0.24 tolerated(0.16) possibly_damaging(0.626) TCGA-BR-6852-01 X 107400108 107400108 A G COL4A6 3'UTR 0.11 TCGA-BR-6852-01 X 107448667 107448667 A G COL4A6 Splice_Site p.X230_splice 0.10 TCGA-BR-6852-01 X 110494317 110494317 T G CAPN6 Missense_Mutation p.D329A 0.10 deleterious(0) probably_damaging(0.96) TCGA-BR-6852-01 X 111002996 111002996 T G ALG13 Silent p.P1061P 0.11 TCGA-BR-6852-01 X 11161925 11161925 C A ARHGAP6 Intron 0.16 TCGA-BR-6852-01 X 118694234 118694234 C T CXorf56 Missense_Mutation p.R80Q 0.17 tolerated(0.1) benign(0.115) TCGA-BR-6852-01 X 119760212 119760212 A C C1GALT1C1 Missense_Mutation p.C270W 0.15 deleterious(0) probably_damaging(0.994) TCGA-BR-6852-01 X 120009089 120009089 G A CT47B1 Missense_Mutation p.R146C 0.12 deleterious(0.04) probably_damaging(0.996) TCGA-BR-6852-01 X 120182522 120182522 T C GLUD2 Silent p.I328I 0.17 TCGA-BR-6852-01 X 123196831 123196831 A G STAG2 Missense_Mutation p.Q573R 0.17 tolerated(0.22) benign(0.173) TCGA-BR-6852-01 X 123217382 123217382 A G STAG2 Silent p.R1012R 0.09 TCGA-BR-6852-01 X 123775719 123775719 A T TENM1 Missense_Mutation p.S667T 0.11 deleterious(0.02) possibly_damaging(0.841) TCGA-BR-6852-01 X 123775729 123775729 T G TENM1 Missense_Mutation p.Q663H 0.10 tolerated(0.57) possibly_damaging(0.629) TCGA-BR-6852-01 X 128605245 128605245 T - SMARCA1 Frame_Shift_Del p.K834Rfs*50 0.17 TCGA-BR-6852-01 X 128944952 128944952 G A ZDHHC9 Missense_Mutation p.P303S 0.18 tolerated(0.27) benign(0.039) TCGA-BR-6852-01 X 129380885 129380885 G A ZNF280C Silent p.D42D 0.18 TCGA-BR-6852-01 X 134703344 134703344 A G DDX26B Silent p.P425P 0.12 TCGA-BR-6852-01 X 135314039 135314039 G A MAP7D3 Silent p.D359D 0.13 TCGA-BR-6852-01 X 137715071 137715071 G T FGF13 Missense_Mutation p.S236R 0.17 deleterious_low_confidence(0) possibly_damaging(0.749) TCGA-BR-6852-01 X 139586596 139586596 C T SOX3 Silent p.P210P 0.26 TCGA-BR-6852-01 X 140953283 140953283 C A MAGEC3 Missense_Mutation p.D50E 0.13 deleterious_low_confidence(0) benign(0.417) TCGA-BR-6852-01 X 141290619 141290619 T C MAGEC2 3'UTR 0.14 TCGA-BR-6852-01 X 1413263 1413263 C T CSF2RA Missense_Mutation p.T230M 0.19 tolerated(0.09) benign(0.247) TCGA-BR-6852-01 X 151935622 151935622 A G MAGEA3 Missense_Mutation p.L182P 0.41 deleterious(0) probably_damaging(0.998) TCGA-BR-6852-01 X 152018835 152018835 C A NSDHL Silent p.G45G 0.17 TCGA-BR-6852-01 X 152612686 152612686 C T ZNF275 Silent p.F181F 0.12 TCGA-BR-6852-01 X 153073995 153073995 C T PDZD4 Missense_Mutation p.R39H 0.16 deleterious(0.03) probably_damaging(0.952) TCGA-BR-6852-01 X 153296568 153296569 - C MECP2 Frame_Shift_Ins p.G250Wfs*21 0.17 TCGA-BR-6852-01 X 15333633 15333633 A - ASB11 Frame_Shift_Del p.L32Wfs*4 0.08 TCGA-BR-6852-01 X 153596212 153596212 G A FLNA Missense_Mutation p.P207L 0.20 deleterious(0) probably_damaging(1) TCGA-BR-6852-01 X 153640245 153640245 G A TAZ Missense_Mutation p.S22N 0.24 tolerated(0.1) benign(0.091) TCGA-BR-6852-01 X 155255058 155255058 C - WASH6P RNA 0.11 TCGA-BR-6852-01 X 18189251 18189251 G A BEND2 Silent p.C685C 0.15 TCGA-BR-6852-01 X 18779674 18779675 - T PPEF1 Frame_Shift_Ins p.L182Ffs*18 0.14 TCGA-BR-6852-01 X 21674964 21674964 C T KLHL34 Missense_Mutation p.E315K 0.16 tolerated(0.18) benign(0.026) TCGA-BR-6852-01 X 322220 322220 C T PPP2R3B Missense_Mutation p.V144I 0.05 tolerated(0.61) benign(0.004) TCGA-BR-6852-01 X 3228137 3228137 C T MXRA5 Missense_Mutation p.V2703M 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-BR-6852-01 X 3242753 3242753 C T MXRA5 Missense_Mutation p.E325K 0.18 deleterious(0) probably_damaging(0.998) TCGA-BR-6852-01 X 41203054 41203054 C T DDX3X Silent p.G248G 0.12 TCGA-BR-6852-01 X 48781133 48781133 G A OTUD5 Missense_Mutation p.A492V 0.07 tolerated(0.09) benign(0.381) TCGA-BR-6852-01 X 49127204 49127204 C T PPP1R3F Missense_Mutation p.P291L 0.25 deleterious_low_confidence(0.02) benign(0.059) TCGA-BR-6852-01 X 53574996 53574996 C T HUWE1 Missense_Mutation p.S3425N 0.16 benign(0.213) TCGA-BR-6852-01 X 54107839 54107839 A G FAM120C Missense_Mutation p.V965A 0.15 deleterious(0) probably_damaging(0.99) TCGA-BR-6852-01 X 54470537 54470537 A T TSR2 Nonsense_Mutation p.K121* 0.13 TCGA-BR-6852-01 X 54815025 54815025 A T ITIH6 Missense_Mutation p.I225N 0.27 deleterious(0) possibly_damaging(0.794) TCGA-BR-6852-01 X 55047483 55047483 A G ALAS2 Splice_Site p.X213_splice 0.20 TCGA-BR-6852-01 X 55757850 55757850 G T RRAGB Missense_Mutation p.R144L 0.08 deleterious(0.01) benign(0.255) TCGA-BR-6852-01 X 57936033 57936033 G A ZXDA Silent p.C274C 0.21 TCGA-BR-6852-01 X 6069136 6069136 C A NLGN4X Silent p.L124L 0.23 TCGA-BR-6852-01 X 63579408 63579408 C G MTMR8 Splice_Site p.X9_splice 0.14 TCGA-BR-6852-01 X 67430049 67430049 A G OPHN1 Missense_Mutation p.C260R 0.20 tolerated(0.33) possibly_damaging(0.775) TCGA-BR-6852-01 X 69354476 69354476 C T IGBP1 Missense_Mutation p.R98C 0.14 deleterious(0.02) possibly_damaging(0.876) TCGA-BR-6852-01 X 74641702 74641702 G T ZDHHC15 Missense_Mutation p.S287Y 0.18 deleterious(0) probably_damaging(0.95) TCGA-BR-6852-01 X 76938509 76938509 T C ATRX Missense_Mutation p.S747G 0.19 benign(0.001) TCGA-BR-6852-01 X 8522076 8522076 C T KAL1 Missense_Mutation p.R424Q 0.15 tolerated(0.14) benign(0.009) TCGA-BR-6852-01 X 9900744 9900744 G - SHROOM2 Frame_Shift_Del p.D1142Tfs*40 0.13 TCGA-BR-6852-01 X 99551740 99551740 A G PCDH19 Silent p.S994S 0.19 TCGA-BR-6852-01 X 99662844 99662844 G T PCDH19 Nonsense_Mutation p.S251* 0.13 TCGA-BR-7196-01 10 26482184 26482184 C T MYO3A Missense_Mutation p.R1497W 0.12 deleterious_low_confidence(0.02) benign(0.033) TCGA-BR-7196-01 10 91371722 91371722 C A PANK1 Nonsense_Mutation p.E263* 0.09 TCGA-BR-7196-01 11 116798045 116798045 A - SIK3 Frame_Shift_Del p.F111Sfs*21 0.10 TCGA-BR-7196-01 11 27679732 27679732 C T BDNF Missense_Mutation p.R209Q 0.12 deleterious(0) probably_damaging(0.947) TCGA-BR-7196-01 11 57575682 57575682 C A CTNND1 Nonsense_Mutation p.S670* 0.11 TCGA-BR-7196-01 11 89537260 89537260 G T TRIM49 Missense_Mutation p.H126Q 0.06 deleterious(0) probably_damaging(0.968) TCGA-BR-7196-01 12 108010928 108010928 G A BTBD11 Silent p.S688S 0.13 TCGA-BR-7196-01 12 119926657 119926657 C T CCDC60 Silent p.T181T 0.16 TCGA-BR-7196-01 12 121435302 121435302 T G HNF1A Missense_Mutation p.S445R 0.08 deleterious(0) possibly_damaging(0.779) TCGA-BR-7196-01 12 124841237 124841237 C A NCOR2 Missense_Mutation p.K1064N 0.13 probably_damaging(0.979) TCGA-BR-7196-01 12 43771289 43771289 T G ADAMTS20 Missense_Mutation p.K1625T 0.10 tolerated(0.63) benign(0.005) TCGA-BR-7196-01 12 62943575 62943575 G C MON2 Missense_Mutation p.E961Q 0.07 deleterious(0) probably_damaging(0.997) TCGA-BR-7196-01 12 7651576 7651576 C G CD163 Missense_Mutation p.W222C 0.08 deleterious(0) probably_damaging(1) TCGA-BR-7196-01 12 939261 939261 G A WNK1 Missense_Mutation p.A416T 0.19 deleterious(0) unknown(0) TCGA-BR-7196-01 13 88328641 88328641 G A SLITRK5 Missense_Mutation p.G333E 0.10 deleterious(0.03) benign(0.269) TCGA-BR-7196-01 14 102551035 102551035 C T HSP90AA1 Missense_Mutation p.D444N 0.07 deleterious_low_confidence(0.01) unknown(0) TCGA-BR-7196-01 14 105415147 105415147 G A AHNAK2 Missense_Mutation p.A2214V 0.08 benign(0.329) TCGA-BR-7196-01 14 20852247 20852247 T C TEP1 Missense_Mutation p.R1162G 0.14 tolerated(0.52) benign(0.01) TCGA-BR-7196-01 14 38724436 38724436 G A CLEC14A Silent p.D264D 0.06 TCGA-BR-7196-01 16 1417222 1417222 C A UNKL Intron 0.20 TCGA-BR-7196-01 16 2331442 2331442 G A ABCA3 Silent p.I1368I 0.07 TCGA-BR-7196-01 16 30903924 30903924 C T BCL7C Missense_Mutation p.R142Q 0.13 tolerated(0.42) benign(0.002) TCGA-BR-7196-01 16 31476027 31476027 G A ARMC5 Silent p.P561P 0.22 TCGA-BR-7196-01 16 86613413 86613413 G C FOXL1 3'UTR 0.11 TCGA-BR-7196-01 17 3787704 3787704 G A CAMKK1 Silent p.N126N 0.06 TCGA-BR-7196-01 17 4848302 4848302 C G RNF167 Missense_Mutation p.I348M 0.05 tolerated_low_confidence(0.07) unknown(0) TCGA-BR-7196-01 17 59155713 59155713 C T BCAS3 Missense_Mutation p.T732I 0.22 tolerated(0.06) possibly_damaging(0.78) TCGA-BR-7196-01 17 67197769 67197769 C A ABCA10 Missense_Mutation p.K349N 0.08 tolerated(0.22) benign(0.085) TCGA-BR-7196-01 18 19444574 19444574 A T MIB1 Missense_Mutation p.S990C 0.11 deleterious(0.01) possibly_damaging(0.905) TCGA-BR-7196-01 18 34340633 34340633 G A FHOD3 Silent p.A1321A 0.12 TCGA-BR-7196-01 19 12790510 12790510 T A DHPS Missense_Mutation p.N173I 0.19 deleterious(0) probably_damaging(0.996) TCGA-BR-7196-01 19 41700606 41700606 A T CYP2S1 Missense_Mutation p.D112V 0.06 deleterious(0.02) possibly_damaging(0.582) TCGA-BR-7196-01 19 42219758 42219758 C T CEACAM5 Missense_Mutation p.T298M 0.22 tolerated(0.06) unknown(0) TCGA-BR-7196-01 19 44470470 44470470 T C ZNF221 Silent p.H272H 0.15 TCGA-BR-7196-01 19 4929291 4929291 C A MIR4747 5'Flank 0.09 TCGA-BR-7196-01 19 50958504 50958504 T C MYBPC2 Silent p.A718A 0.16 TCGA-BR-7196-01 1 1268156 1268156 C T TAS1R3 Silent p.C415C 0.09 TCGA-BR-7196-01 1 144994738 144994738 C T PDE4DIP 5'UTR 0.05 TCGA-BR-7196-01 1 16059105 16059105 A C PLEKHM2 Splice_Site p.X936_splice 0.15 TCGA-BR-7196-01 1 22030758 22030758 G A USP48 Missense_Mutation p.P838S 0.14 deleterious(0) possibly_damaging(0.76) TCGA-BR-7196-01 1 23695736 23695736 C T C1orf213 5'UTR 0.14 TCGA-BR-7196-01 1 242045261 242045261 A T EXO1 Missense_Mutation p.Q718L 0.10 tolerated(0.29) benign(0.002) TCGA-BR-7196-01 1 27058061 27058064 CTGC - ARID1A Frame_Shift_Del p.A591Ifs*27 0.09 TCGA-BR-7196-01 1 27097694 27097694 C T ARID1A Nonsense_Mutation p.Q1095* 0.12 TCGA-BR-7196-01 1 54692672 54692672 G T SSBP3 3'UTR 0.08 TCGA-BR-7196-01 20 45003173 45003173 A T ELMO2 Splice_Site p.X390_splice 0.05 TCGA-BR-7196-01 20 48600433 48600433 C G SNAI1 Missense_Mutation p.P52R 0.03 deleterious(0) possibly_damaging(0.626) TCGA-BR-7196-01 20 49576176 49576176 G T MOCS3 Missense_Mutation p.G266V 0.08 deleterious(0) possibly_damaging(0.756) TCGA-BR-7196-01 21 38877823 38877823 G A DYRK1A Missense_Mutation p.V493I 0.12 tolerated(0.15) benign(0.007) TCGA-BR-7196-01 22 29956772 29956772 G A NIPSNAP1 Silent p.G219G 0.10 TCGA-BR-7196-01 22 46657925 46657925 C G PKDREJ Missense_Mutation p.R432T 0.10 deleterious(0) probably_damaging(0.997) TCGA-BR-7196-01 2 130951688 130951688 G A TUBA3E Nonsense_Mutation p.R243* 0.13 TCGA-BR-7196-01 2 131520836 131520836 G C AMER3 Missense_Mutation p.E397D 0.19 tolerated(0.5) possibly_damaging(0.532) TCGA-BR-7196-01 2 173898667 173898667 T A RAPGEF4 Missense_Mutation p.F892Y 0.19 deleterious(0.03) benign(0.417) TCGA-BR-7196-01 2 215278974 215278974 C T VWC2L Silent p.V19V 0.06 TCGA-BR-7196-01 2 63631623 63631623 G C WDPCP Missense_Mutation p.T332S 0.05 deleterious(0) probably_damaging(0.971) TCGA-BR-7196-01 2 90044218 90044218 C A IGKV2D-24 Missense_Mutation p.Q47K 0.09 tolerated(0.11) benign(0.006) TCGA-BR-7196-01 3 123419688 123419688 C T MYLK Missense_Mutation p.R876H 0.23 tolerated(0.07) benign(0.162) TCGA-BR-7196-01 3 178921553 178921553 T A PIK3CA Missense_Mutation p.N345K 0.13 deleterious(0.01) probably_damaging(1) TCGA-BR-7196-01 3 189690711 189690711 T G LEPREL1 Missense_Mutation p.T551P 0.23 tolerated(1) benign(0.007) TCGA-BR-7196-01 3 197238850 197238850 G A BDH1 Silent p.H316H 0.24 TCGA-BR-7196-01 3 40251427 40251427 G A MYRIP Missense_Mutation p.R583Q 0.06 tolerated(0.26) benign(0.007) TCGA-BR-7196-01 4 122801003 122801003 G T TRPC3 Missense_Mutation p.S885Y 0.11 deleterious(0) probably_damaging(0.997) TCGA-BR-7196-01 4 151836804 151836804 G A LRBA Silent p.L324L 0.05 TCGA-BR-7196-01 4 155461124 155461124 C A PLRG1 Missense_Mutation p.A341S 0.13 tolerated(0.35) benign(0.256) TCGA-BR-7196-01 4 156638314 156638314 G A GUCY1A3 Missense_Mutation p.E526K 0.16 deleterious(0) possibly_damaging(0.875) TCGA-BR-7196-01 4 189012674 189012674 C A TRIML2 Missense_Mutation p.M339I 0.07 deleterious(0.03) benign(0) TCGA-BR-7196-01 4 46264078 46264078 A G GABRA2 Silent p.A308A 0.07 TCGA-BR-7196-01 4 57301585 57301585 G C PPAT Nonsense_Mutation p.S20* 0.12 TCGA-BR-7196-01 5 13701516 13701516 G T DNAH5 Missense_Mutation p.F4456L 0.06 benign(0.418) TCGA-BR-7196-01 5 140476607 140476607 G A PCDHB2 Missense_Mutation p.G745R 0.15 deleterious_low_confidence(0.02) benign(0.308) TCGA-BR-7196-01 5 40692250 40692250 A C PTGER4 Missense_Mutation p.N413H 0.21 tolerated(0.33) benign(0.235) TCGA-BR-7196-01 5 45695943 45695943 C A HCN1 Nonsense_Mutation p.E85* 0.11 TCGA-BR-7196-01 5 61857028 61857028 T A IPO11 Silent p.P882P 0.25 TCGA-BR-7196-01 6 106553508 106553508 G A PRDM1 Silent p.A491A 0.16 TCGA-BR-7196-01 6 117641088 117641088 T C ROS1 Silent p.E1961E 0.08 TCGA-BR-7196-01 6 152420094 152420094 C T ESR1 Missense_Mutation p.T594M 0.25 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-BR-7196-01 6 159636057 159636057 C T FNDC1 Missense_Mutation p.R181C 0.10 deleterious(0) unknown(0) TCGA-BR-7196-01 6 42016482 42016482 G A TAF8 5'Flank 0.17 TCGA-BR-7196-01 6 43251528 43251528 G A TTBK1 Missense_Mutation p.G1017D 0.15 probably_damaging(0.912) TCGA-BR-7196-01 6 53785539 53785539 G A LRRC1 Missense_Mutation p.D466N 0.11 tolerated(0.09) possibly_damaging(0.511) TCGA-BR-7196-01 7 143632812 143632812 A C OR2F2 Missense_Mutation p.T163P 0.05 deleterious(0) benign(0.316) TCGA-BR-7196-01 7 44797586 44797586 C G ZMIZ2 Missense_Mutation p.P231R 0.06 tolerated(0.08) benign(0.13) TCGA-BR-7196-01 8 128753034 128753034 T G MYC Missense_Mutation p.L399V 0.03 tolerated(1) possibly_damaging(0.48) TCGA-BR-7196-01 9 127920613 127920613 G A PPP6C Missense_Mutation p.L133F 0.10 deleterious(0) probably_damaging(0.963) TCGA-BR-7196-01 9 15920398 15920398 G A CCDC171 Missense_Mutation p.R1244H 0.09 tolerated(0.25) probably_damaging(0.999) TCGA-BR-7196-01 X 119389023 119389023 C G ZBTB33 Missense_Mutation p.R585G 0.08 deleterious(0) possibly_damaging(0.541) TCGA-BR-7196-01 X 39923604 39923604 G A BCOR Nonsense_Mutation p.R1163* 0.26 TCGA-BR-7197-01 10 105172893 105172893 C T PDCD11 Silent p.C333C 0.25 TCGA-BR-7197-01 10 125426323 125426323 G A GPR26 Missense_Mutation p.A134T 0.32 deleterious(0.01) benign(0.327) TCGA-BR-7197-01 10 127569436 127569436 A C DHX32 5'UTR 0.22 TCGA-BR-7197-01 10 12803037 12803037 C T CAMK1D Silent p.D130D 0.23 TCGA-BR-7197-01 10 134165209 134165209 C T LRRC27 Missense_Mutation p.A342V 0.24 deleterious(0.04) probably_damaging(0.939) TCGA-BR-7197-01 10 135204907 135204907 G A PAOX Missense_Mutation p.R495H 0.04 deleterious(0.04) probably_damaging(1) TCGA-BR-7197-01 10 17126401 17126401 A C CUBN Missense_Mutation p.L724V 0.30 deleterious(0.02) possibly_damaging(0.803) TCGA-BR-7197-01 10 26463195 26463195 G A MYO3A Silent p.R1334R 0.16 TCGA-BR-7197-01 10 54053671 54053671 T G PRKG1 3'UTR 0.39 TCGA-BR-7197-01 10 60150559 60150559 G T TFAM Missense_Mutation p.R159L 0.23 deleterious(0) probably_damaging(0.998) TCGA-BR-7197-01 10 72294583 72294583 C A PALD1 Missense_Mutation p.P404Q 0.22 tolerated(0.42) benign(0.009) TCGA-BR-7197-01 10 76935972 76935972 A T SAMD8 Missense_Mutation p.E314V 0.24 deleterious(0) probably_damaging(0.999) TCGA-BR-7197-01 10 98192670 98192670 G A TLL2 Silent p.A138A 0.45 TCGA-BR-7197-01 10 99116858 99116858 C T RRP12 Missense_Mutation p.R1296Q 0.24 deleterious(0.01) possibly_damaging(0.769) TCGA-BR-7197-01 10 99133605 99133605 G A RRP12 Silent p.Y615Y 0.21 TCGA-BR-7197-01 11 102221160 102221160 A G BIRC2 Missense_Mutation p.H192R 0.30 tolerated(0.22) benign(0.001) TCGA-BR-7197-01 11 105795340 105795340 A C GRIA4 Silent p.L564L 0.30 TCGA-BR-7197-01 11 111637141 111637141 C G PPP2R1B 5'Flank 0.33 TCGA-BR-7197-01 11 124189172 124189172 T G OR8D2 Silent p.R308R 0.27 TCGA-BR-7197-01 11 21594756 21594756 T G NELL1 Missense_Mutation p.L728R 0.12 deleterious(0) possibly_damaging(0.848) TCGA-BR-7197-01 11 4661487 4661487 A T OR51D1 Missense_Mutation p.K156M 0.32 deleterious(0.01) probably_damaging(0.995) TCGA-BR-7197-01 11 5068233 5068233 C T OR52J3 Missense_Mutation p.P160S 0.22 deleterious(0.01) probably_damaging(1) TCGA-BR-7197-01 11 55890577 55890577 T C OR8H3 Silent p.S243S 0.37 TCGA-BR-7197-01 11 58034972 58034972 G A OR10W1 Missense_Mutation p.P120L 0.36 deleterious(0) probably_damaging(1) TCGA-BR-7197-01 11 5905690 5905690 T C OR52E4 Silent p.S56S 0.29 TCGA-BR-7197-01 11 6265440 6265440 A C CNGA4 Missense_Mutation p.K510T 0.22 deleterious(0) benign(0.08) TCGA-BR-7197-01 11 69488060 69488060 T C ORAOV1 Missense_Mutation p.Y27C 0.30 deleterious(0) probably_damaging(0.971) TCGA-BR-7197-01 12 10462015 10462015 T G KLRD1 Missense_Mutation p.I12M 0.29 tolerated(0.1) possibly_damaging(0.872) TCGA-BR-7197-01 12 133196330 133196330 C A P2RX2 Nonsense_Mutation p.C125* 0.29 TCGA-BR-7197-01 12 18841074 18841074 C A PLCZ1 Missense_Mutation p.G514C 0.06 deleterious(0) probably_damaging(1) TCGA-BR-7197-01 12 21953963 21953963 T A ABCC9 3'UTR 0.26 TCGA-BR-7197-01 12 24365393 24365393 A C MIR920 RNA 0.29 TCGA-BR-7197-01 12 88530428 88530428 T C CEP290 Missense_Mutation p.N145D 0.29 probably_damaging(0.997) TCGA-BR-7197-01 12 9847417 9847417 A G CLEC2D 3'UTR 0.31 TCGA-BR-7197-01 13 39262883 39262883 T C FREM2 Silent p.L468L 0.19 TCGA-BR-7197-01 13 39435669 39435669 A C FREM2 Missense_Mutation p.K2541Q 0.19 deleterious(0.01) possibly_damaging(0.541) TCGA-BR-7197-01 13 58208116 58208116 T C PCDH17 Missense_Mutation p.L479P 0.13 deleterious(0) probably_damaging(0.968) TCGA-BR-7197-01 14 21861850 21861850 C T CHD8 Missense_Mutation p.R2035Q 0.36 tolerated_low_confidence(0.35) benign(0.238) TCGA-BR-7197-01 14 28733788 28733788 A G BNIP3P1 RNA 0.47 TCGA-BR-7197-01 14 77751348 77751348 G A POMT2 Silent p.Y507Y 0.23 TCGA-BR-7197-01 15 23932080 23932080 C T NDN Silent p.P95P 0.44 TCGA-BR-7197-01 15 72455726 72455726 C T GRAMD2 Silent p.P279P 0.20 TCGA-BR-7197-01 15 75580704 75580704 G C GOLGA6D Missense_Mutation p.R188T 0.20 deleterious(0.04) possibly_damaging(0.765) TCGA-BR-7197-01 15 90771576 90771576 C T SEMA4B Missense_Mutation p.R739W 0.13 deleterious(0.04) probably_damaging(0.999) TCGA-BR-7197-01 16 28112970 28112970 C T XPO6 Missense_Mutation p.V1029M 0.17 deleterious(0) benign(0.176) TCGA-BR-7197-01 16 3139328 3139328 C T ZSCAN10 Missense_Mutation p.A648T 0.42 deleterious(0.04) possibly_damaging(0.822) TCGA-BR-7197-01 16 3140172 3140172 C G ZSCAN10 Missense_Mutation p.K366N 0.44 deleterious(0.01) probably_damaging(0.999) TCGA-BR-7197-01 16 4411080 4411080 G A CORO7 Missense_Mutation p.T594M 0.19 tolerated(0.07) benign(0.007) TCGA-BR-7197-01 16 61761004 61761004 G A CDH8 Silent p.P510P 0.51 TCGA-BR-7197-01 16 64981820 64981820 G A CDH11 Missense_Mutation p.R693C 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-BR-7197-01 16 683049 683049 G A WFIKKN1 Silent p.P213P 0.22 TCGA-BR-7197-01 16 89629451 89629451 A C RPL13 3'UTR 0.22 TCGA-BR-7197-01 16 90099328 90099328 G A GAS8 Missense_Mutation p.R164Q 0.15 tolerated(0.1) benign(0.004) TCGA-BR-7197-01 17 21731181 21731181 C T UBBP4 Silent p.T161T 0.48 TCGA-BR-7197-01 17 26671447 26671447 A T TNFAIP1 Missense_Mutation p.T258S 0.26 tolerated(0.3) benign(0.001) TCGA-BR-7197-01 17 40837321 40837321 G A CNTNAP1 Missense_Mutation p.A200T 0.27 deleterious(0.04) benign(0.172) TCGA-BR-7197-01 17 41020639 41020639 C G AOC4P RNA 0.35 TCGA-BR-7197-01 17 73747111 73747112 - T ITGB4 Frame_Shift_Ins p.S1239Efs*4 0.17 TCGA-BR-7197-01 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.34 TCGA-BR-7197-01 18 50848502 50848502 A T DCC Silent p.A713A 0.27 TCGA-BR-7197-01 18 63530059 63530059 A G CDH7 Silent p.V590V 0.25 TCGA-BR-7197-01 18 7043226 7043226 T G LAMA1 Missense_Mutation p.K385N 0.24 tolerated(0.26) benign(0.049) TCGA-BR-7197-01 18 72346747 72346747 C T ZNF407 Missense_Mutation p.R1258C 0.17 deleterious(0.05) benign(0.118) TCGA-BR-7197-01 19 16638979 16638979 C T CHERP Missense_Mutation p.R406Q 0.57 tolerated_low_confidence(0.09) probably_damaging(0.921) TCGA-BR-7197-01 19 17416747 17416747 G C MRPL34 Missense_Mutation p.A16P 0.53 deleterious_low_confidence(0.01) benign(0.132) TCGA-BR-7197-01 19 17972164 17972164 C A RPL18A Silent p.L27L 0.14 TCGA-BR-7197-01 19 18886480 18886480 C T CRTC1 Silent p.A530A 0.09 TCGA-BR-7197-01 19 21606384 21606384 T A ZNF493 Missense_Mutation p.L308H 0.29 deleterious(0) probably_damaging(0.994) TCGA-BR-7197-01 19 22002007 22002007 A G ZNF43 Missense_Mutation p.M7T 0.37 tolerated(0.06) benign(0.268) TCGA-BR-7197-01 19 22156121 22156121 T G ZNF208 Missense_Mutation p.K572T 0.43 deleterious(0.01) probably_damaging(0.96) TCGA-BR-7197-01 19 31768179 31768179 G A TSHZ3 Silent p.R840R 0.21 TCGA-BR-7197-01 19 37117123 37117123 A C ZNF382 Missense_Mutation p.K108N 0.36 tolerated(0.15) benign(0.003) TCGA-BR-7197-01 19 42753425 42753425 G A ERF Missense_Mutation p.S280L 0.70 deleterious(0) probably_damaging(0.97) TCGA-BR-7197-01 19 44933212 44933212 G A ZNF229 Missense_Mutation p.R582W 0.23 tolerated(0.07) benign(0.017) TCGA-BR-7197-01 19 49310309 49310309 G A BCAT2 Missense_Mutation p.S16F 0.33 deleterious(0.01) benign(0.098) TCGA-BR-7197-01 19 51411894 51411894 G A KLK4 Missense_Mutation p.S139L 0.28 deleterious(0) probably_damaging(0.919) TCGA-BR-7197-01 19 51920007 51920007 G A SIGLEC10 Nonsense_Mutation p.Q207* 0.31 TCGA-BR-7197-01 19 9059857 9059857 T A MUC16 Missense_Mutation p.T9197S 0.26 unknown(0) TCGA-BR-7197-01 19 9072191 9072191 T G MUC16 Silent p.T5085T 0.39 TCGA-BR-7197-01 19 9073279 9073279 C A MUC16 Missense_Mutation p.A4723S 0.18 unknown(0) TCGA-BR-7197-01 1 108313276 108313276 A C VAV3 Silent p.T210T 0.25 TCGA-BR-7197-01 1 110714822 110714822 G A SLC6A17 Missense_Mutation p.G143S 0.33 deleterious(0) probably_damaging(0.988) TCGA-BR-7197-01 1 147380926 147380926 A C GJA8 Missense_Mutation p.T282P 0.06 tolerated(0.14) possibly_damaging(0.782) TCGA-BR-7197-01 1 150550743 150550743 A C MCL1 Missense_Mutation p.W305G 0.22 deleterious(0) probably_damaging(0.999) TCGA-BR-7197-01 1 151378488 151378488 C T POGZ Missense_Mutation p.R1008Q 0.28 tolerated(0.41) probably_damaging(0.99) TCGA-BR-7197-01 1 161480730 161480730 G A FCGR2A Silent p.R242R 0.48 TCGA-BR-7197-01 1 175067563 175067563 G A TNN Missense_Mutation p.V651M 0.21 tolerated(1) benign(0.009) TCGA-BR-7197-01 1 186056429 186056429 G T HMCN1 Nonsense_Mutation p.E3043* 0.75 TCGA-BR-7197-01 1 213224693 213224693 G T RPS6KC1 5'UTR 0.23 TCGA-BR-7197-01 1 228111927 228111927 C A WNT9A Missense_Mutation p.S176I 0.28 tolerated(0.29) benign(0.4) TCGA-BR-7197-01 1 35570337 35570337 T G ZMYM1 Missense_Mutation p.F258L 0.06 tolerated_low_confidence(0.18) benign(0.002) TCGA-BR-7197-01 1 40535894 40535894 A T CAP1 Missense_Mutation p.I353L 0.34 tolerated(0.09) benign(0.005) TCGA-BR-7197-01 1 67266854 67266854 G C INSL5 Missense_Mutation p.I17M 0.14 deleterious(0.01) possibly_damaging(0.635) TCGA-BR-7197-01 1 70555456 70555456 G A LRRC7 Missense_Mutation p.S1462N 0.29 deleterious(0) probably_damaging(0.994) TCGA-BR-7197-01 1 7737720 7737720 G A CAMTA1 Silent p.S947S 0.32 TCGA-BR-7197-01 1 91784848 91784848 A G HFM1 Splice_Site p.X894_splice 0.65 TCGA-BR-7197-01 1 95639441 95639441 C T TMEM56 Nonsense_Mutation p.Q157* 0.33 TCGA-BR-7197-01 20 13756707 13756707 C T ESF1 Missense_Mutation p.E283K 0.25 tolerated(0.26) benign(0.058) TCGA-BR-7197-01 20 2988067 2988067 G A PTPRA Splice_Site p.X302_splice 0.15 TCGA-BR-7197-01 20 3146426 3146426 G A LZTS3 Missense_Mutation p.A347V 0.30 tolerated(0.1) benign(0.028) TCGA-BR-7197-01 20 33577664 33577664 G A MYH7B Missense_Mutation p.R612Q 0.12 possibly_damaging(0.814) TCGA-BR-7197-01 20 33706370 33706370 T C EDEM2 Intron 0.42 TCGA-BR-7197-01 20 36978001 36978001 C A LBP Missense_Mutation p.L59M 0.12 deleterious(0.03) probably_damaging(0.967) TCGA-BR-7197-01 20 39977772 39977772 A G LPIN3 Missense_Mutation p.I200V 0.12 tolerated(0.67) benign(0.018) TCGA-BR-7197-01 20 54970640 54970640 G A CSTF1 Missense_Mutation p.R11H 0.12 deleterious(0) possibly_damaging(0.828) TCGA-BR-7197-01 20 57766527 57766527 C T ZNF831 Silent p.R151R 0.30 TCGA-BR-7197-01 20 61958163 61958163 C T COL20A1 Silent p.T1172T 0.25 TCGA-BR-7197-01 21 28338124 28338124 T C ADAMTS5 Missense_Mutation p.E196G 0.50 tolerated(0.13) possibly_damaging(0.521) TCGA-BR-7197-01 21 28338580 28338580 C T ADAMTS5 Missense_Mutation p.R44H 0.27 tolerated_low_confidence(0.38) possibly_damaging(0.467) TCGA-BR-7197-01 22 45767386 45767386 G A SMC1B Nonsense_Mutation p.R760* 0.24 TCGA-BR-7197-01 2 10059894 10059894 T G TAF1B Missense_Mutation p.S504A 0.49 tolerated(0.78) benign(0.006) TCGA-BR-7197-01 2 105924384 105924384 G A TGFBRAP1 Silent p.N125N 0.34 TCGA-BR-7197-01 2 125262112 125262112 C T CNTNAP5 Missense_Mutation p.R435C 0.26 tolerated(0.07) possibly_damaging(0.67) TCGA-BR-7197-01 2 141108422 141108422 T C LRP1B Missense_Mutation p.I3946V 0.11 benign(0.031) TCGA-BR-7197-01 2 145156170 145156170 A G ZEB2 Silent p.L862L 0.26 TCGA-BR-7197-01 2 145274932 145274932 C T ZEB2 5'UTR 0.24 TCGA-BR-7197-01 2 152107515 152107515 G A RBM43 Missense_Mutation p.L327F 0.25 tolerated(0.77) benign(0) TCGA-BR-7197-01 2 166901827 166901827 G A SCN1A Missense_Mutation p.T463M 0.34 tolerated(0.17) benign(0.068) TCGA-BR-7197-01 2 171687619 171687619 A C GAD1 Missense_Mutation p.N155T 0.30 deleterious(0.04) benign(0.039) TCGA-BR-7197-01 2 179578722 179578722 T G TTN Missense_Mutation p.K8888T 0.34 TCGA-BR-7197-01 2 179604456 179604456 T G TTN Missense_Mutation p.S4502R 0.30 TCGA-BR-7197-01 2 185803431 185803458 TGCAGCAGCACGCTGCAGCTGCTGCAGC - ZNF804A Frame_Shift_Del p.Q1105Lfs*35 0.12 TCGA-BR-7197-01 2 187466848 187466848 C T ITGAV Missense_Mutation p.R96W 0.27 deleterious(0.01) benign(0.368) TCGA-BR-7197-01 2 201485953 201485953 T C AOX1 Missense_Mutation p.F662S 0.28 deleterious(0) benign(0.005) TCGA-BR-7197-01 2 210559838 210559838 G C MAP2 Missense_Mutation p.E982Q 0.22 deleterious_low_confidence(0.02) possibly_damaging(0.742) TCGA-BR-7197-01 2 212248599 212248599 T G ERBB4 Missense_Mutation p.K1223T 0.27 tolerated(0.47) benign(0.027) TCGA-BR-7197-01 2 215440504 215440504 A C VWC2L Missense_Mutation p.Q210P 0.20 tolerated(0.13) possibly_damaging(0.643) TCGA-BR-7197-01 2 225702525 225702525 T A DOCK10 Missense_Mutation p.K935M 0.17 tolerated(0.18) probably_damaging(0.998) TCGA-BR-7197-01 2 227896700 227896700 G A COL4A4 Missense_Mutation p.P1260S 0.41 unknown(0) TCGA-BR-7197-01 2 27801239 27801239 C T C2orf16 Silent p.I600I 0.12 TCGA-BR-7197-01 2 84800599 84800599 T G DNAH6 Missense_Mutation p.I604M 0.18 tolerated(0.07) benign(0.118) TCGA-BR-7197-01 2 88472655 88472655 C G THNSL2 5'UTR 0.33 TCGA-BR-7197-01 3 10442664 10442664 C T ATP2B2 Missense_Mutation p.V252M 0.19 tolerated(0.23) possibly_damaging(0.852) TCGA-BR-7197-01 3 138461469 138461469 G A PIK3CB Silent p.I184I 0.23 TCGA-BR-7197-01 3 140692763 140692763 G A SLC25A36 Missense_Mutation p.V220M 0.29 tolerated(0.25) benign(0.002) TCGA-BR-7197-01 3 145788494 145788494 A C PLOD2 3'UTR 0.11 TCGA-BR-7197-01 3 152553548 152553548 G A P2RY1 5'UTR 0.41 TCGA-BR-7197-01 3 164709261 164709261 T G SI Missense_Mutation p.K1663T 0.18 tolerated(0.51) benign(0.009) TCGA-BR-7197-01 3 178546118 178546118 T G KCNMB2 Missense_Mutation p.L127R 0.23 tolerated(0.13) possibly_damaging(0.478) TCGA-BR-7197-01 3 184009886 184009886 G A ECE2 Missense_Mutation p.E838K 0.27 tolerated(0.2) possibly_damaging(0.849) TCGA-BR-7197-01 3 192516158 192516158 A G MB21D2 3'UTR 0.34 TCGA-BR-7197-01 3 194331653 194331653 C A TMEM44 Missense_Mutation p.V384L 0.35 deleterious(0.01) possibly_damaging(0.558) TCGA-BR-7197-01 3 196746591 196746591 G A MFI2 Intron 0.26 TCGA-BR-7197-01 3 39430993 39430993 C T SLC25A38 Missense_Mutation p.P26L 0.10 deleterious(0) probably_damaging(1) TCGA-BR-7197-01 3 5025133 5025133 C T BHLHE40 Missense_Mutation p.A332V 0.26 deleterious(0.04) probably_damaging(0.948) TCGA-BR-7197-01 3 65344795 65344795 T G MAGI1 Intron 0.34 TCGA-BR-7197-01 3 98489735 98489735 G A ST3GAL6 Silent p.V34V 0.29 TCGA-BR-7197-01 4 162307513 162307513 C A FSTL5 Missense_Mutation p.D644Y 0.44 deleterious(0.02) benign(0.361) TCGA-BR-7197-01 4 173730599 173730599 G A GALNTL6 Missense_Mutation p.R214Q 0.35 deleterious(0.03) probably_damaging(1) TCGA-BR-7197-01 4 3318204 3318204 G A RGS12 Missense_Mutation p.E103K 0.40 deleterious(0.03) benign(0.298) TCGA-BR-7197-01 4 39450366 39450366 C T KLB 3'UTR 0.33 TCGA-BR-7197-01 4 39482110 39482110 G A LIAS 3'Flank 0.16 TCGA-BR-7197-01 4 48592824 48592824 G A FRYL Silent p.V453V 0.11 TCGA-BR-7197-01 4 87028500 87028500 G A MAPK10 Missense_Mutation p.A81V 0.15 deleterious(0.01) benign(0.367) TCGA-BR-7197-01 5 112151261 112151261 C T APC Nonsense_Mutation p.R302* 0.27 TCGA-BR-7197-01 5 121488479 121488479 A C ZNF474 Missense_Mutation p.K265T 0.41 deleterious(0) probably_damaging(0.999) TCGA-BR-7197-01 5 127510310 127510310 G T SLC12A2 Missense_Mutation p.D961Y 0.34 deleterious(0) probably_damaging(0.927) TCGA-BR-7197-01 5 140536961 140536961 G A PCDHB17 Missense_Mutation p.R462H 0.47 tolerated_low_confidence(0.07) benign(0.287) TCGA-BR-7197-01 5 140807341 140807341 G A PCDHGB6 Intron 0.29 TCGA-BR-7197-01 5 140807358 140807358 G A PCDHGB6 Intron 0.22 TCGA-BR-7197-01 5 14504649 14504649 C T TRIO Silent p.V2853V 0.39 TCGA-BR-7197-01 5 175786552 175786552 C T KIAA1191 5'UTR 0.37 TCGA-BR-7197-01 5 35876425 35876425 T G IL7R Missense_Mutation p.L406R 0.08 tolerated(0.3) possibly_damaging(0.824) TCGA-BR-7197-01 5 3599410 3599410 T G IRX1 Silent p.A116A 0.27 TCGA-BR-7197-01 5 37834914 37834914 G A GDNF Silent p.A12A 0.08 TCGA-BR-7197-01 5 45645353 45645353 T G HCN1 Missense_Mutation p.K261N 0.38 deleterious(0) probably_damaging(0.998) TCGA-BR-7197-01 5 5239336 5239336 T C ADAMTS16 Missense_Mutation p.S743P 0.59 deleterious(0) probably_damaging(0.966) TCGA-BR-7197-01 6 100960674 100960674 G A ASCC3 Nonsense_Mutation p.R2066* 0.14 TCGA-BR-7197-01 6 110064385 110064385 A C FIG4 Missense_Mutation p.S317R 0.24 tolerated(0.63) benign(0.002) TCGA-BR-7197-01 6 144780063 144780063 C G UTRN Missense_Mutation p.I814M 0.55 deleterious(0.01) benign(0.015) TCGA-BR-7197-01 6 152671358 152671358 T A SYNE1 Missense_Mutation p.D3949V 0.40 benign(0.312) TCGA-BR-7197-01 6 30550930 30550930 C T ABCF1 Missense_Mutation p.R294C 0.25 deleterious(0) probably_damaging(0.964) TCGA-BR-7197-01 6 31496954 31496954 C T MCCD1 Missense_Mutation p.P55S 0.12 tolerated(0.13) benign(0.003) TCGA-BR-7197-01 6 32020588 32020588 G T TNXB Silent p.R2990R 0.19 TCGA-BR-7197-01 6 54806564 54806564 G A FAM83B Missense_Mutation p.R932H 0.20 deleterious(0) probably_damaging(0.999) TCGA-BR-7197-01 6 6145969 6145969 T G F13A1 Missense_Mutation p.E694D 0.15 tolerated(0.1) benign(0.244) TCGA-BR-7197-01 6 70071081 70071081 A C BAI3 Missense_Mutation p.S1306R 0.24 tolerated(0.05) benign(0.107) TCGA-BR-7197-01 6 70423647 70423647 A C LMBRD1 Missense_Mutation p.L269V 0.12 tolerated(0.18) benign(0.2) TCGA-BR-7197-01 6 76063321 76063321 T A FILIP1 Missense_Mutation p.H188L 0.18 deleterious(0.01) possibly_damaging(0.524) TCGA-BR-7197-01 6 79664656 79664656 G A PHIP Missense_Mutation p.R1310C 0.32 deleterious(0) probably_damaging(0.993) TCGA-BR-7197-01 7 103322678 103322678 A G RELN Missense_Mutation p.Y392H 0.28 tolerated(0.07) probably_damaging(0.994) TCGA-BR-7197-01 7 120770266 120770266 C T CPED1 Silent p.L499L 0.19 TCGA-BR-7197-01 7 120781020 120781020 T C CPED1 Silent p.T613T 0.20 TCGA-BR-7197-01 7 120876819 120876819 T C CPED1 Missense_Mutation p.S703P 0.21 tolerated(0.18) benign(0.004) TCGA-BR-7197-01 7 14724974 14724974 T G DGKB Missense_Mutation p.D242A 0.09 deleterious(0) possibly_damaging(0.83) TCGA-BR-7197-01 7 150920882 150920882 C T ABCF2 Missense_Mutation p.D202N 0.36 tolerated(0.16) possibly_damaging(0.819) TCGA-BR-7197-01 7 157000610 157000610 G A UBE3C Missense_Mutation p.R597K 0.13 tolerated(0.68) benign(0.053) TCGA-BR-7197-01 7 19035699 19035699 C T HDAC9 3'Flank 0.16 TCGA-BR-7197-01 7 23871800 23871800 A C STK31 Missense_Mutation p.S959R 0.13 deleterious(0.01) possibly_damaging(0.493) TCGA-BR-7197-01 7 2578824 2578824 C T BRAT1 Missense_Mutation p.E587K 0.19 tolerated(0.85) benign(0.021) TCGA-BR-7197-01 7 26224983 26224983 C T NFE2L3 Silent p.V555V 0.05 TCGA-BR-7197-01 7 45144523 45144523 T G TBRG4 Intron 0.29 TCGA-BR-7197-01 7 48559811 48559811 T A ABCA13 Missense_Mutation p.F4658I 0.15 probably_damaging(0.999) TCGA-BR-7197-01 7 65157822 65157822 G A INTS4L2 Intron 0.25 TCGA-BR-7197-01 7 73122931 73122931 T G STX1A Missense_Mutation p.N66H 0.16 tolerated(0.13) benign(0.117) TCGA-BR-7197-01 7 82544655 82544655 T G PCLO Missense_Mutation p.Y4216S 0.12 unknown(0) TCGA-BR-7197-01 7 82544697 82544697 T A PCLO Missense_Mutation p.K4202I 0.14 unknown(0) TCGA-BR-7197-01 7 82581838 82581838 C T PCLO Missense_Mutation p.E2811K 0.18 unknown(0) TCGA-BR-7197-01 7 82583158 82583158 T A PCLO Nonsense_Mutation p.K2371* 0.18 TCGA-BR-7197-01 7 92733880 92733880 T G SAMD9 Missense_Mutation p.S511R 0.14 tolerated(0.36) benign(0.007) TCGA-BR-7197-01 7 94257572 94257572 T C SGCE Missense_Mutation p.D111G 0.24 tolerated(0.1) probably_damaging(0.937) TCGA-BR-7197-01 7 95709704 95709704 G A DYNC1I1 Silent p.G577G 0.23 TCGA-BR-7197-01 8 105361682 105361682 T G DCSTAMP Missense_Mutation p.L301R 0.21 deleterious(0) probably_damaging(0.976) TCGA-BR-7197-01 8 110986309 110986309 G A KCNV1 Silent p.F103F 0.32 TCGA-BR-7197-01 8 133187703 133187703 G A KCNQ3 Silent p.G310G 0.16 TCGA-BR-7197-01 8 145772550 145772550 G A ARHGAP39 Silent p.T640T 0.35 TCGA-BR-7197-01 8 27967927 27967928 - CCTA ELP3 Frame_Shift_Ins p.Q147Pfs*16 0.37 TCGA-BR-7197-01 8 35541239 35541239 G A UNC5D Missense_Mutation p.V249I 0.21 deleterious(0.02) benign(0.17) TCGA-BR-7197-01 8 39871157 39871157 G A IDO2 Missense_Mutation p.G278S 0.28 deleterious(0) probably_damaging(1) TCGA-BR-7197-01 8 41906165 41906165 C A KAT6A Missense_Mutation p.A111S 0.12 benign(0.306) TCGA-BR-7197-01 8 52384785 52384785 T G PXDNL Missense_Mutation p.E258D 0.75 tolerated(0.14) possibly_damaging(0.734) TCGA-BR-7197-01 8 63976767 63976767 G A TTPA Missense_Mutation p.R221W 0.19 deleterious(0) probably_damaging(0.998) TCGA-BR-7197-01 8 72756484 72756484 G A RP11-383H13.1 Silent p.P108P 0.39 TCGA-BR-7197-01 8 99170065 99170065 G A POP1 Missense_Mutation p.E881K 0.75 deleterious(0.01) possibly_damaging(0.839) TCGA-BR-7197-01 9 101052865 101052865 C A GABBR2 3'UTR 0.17 TCGA-BR-7197-01 9 133498194 133498194 C T FUBP3 Missense_Mutation p.P291S 0.25 deleterious(0.03) possibly_damaging(0.884) TCGA-BR-7197-01 9 35800105 35800105 G A NPR2 Silent p.R358R 0.38 TCGA-BR-7197-01 9 98685633 98685633 C G ERCC6L2 Missense_Mutation p.S513C 0.37 deleterious(0) possibly_damaging(0.609) TCGA-BR-7197-01 X 111698082 111698082 A C ZCCHC16 Missense_Mutation p.Q42H 0.63 deleterious(0.04) probably_damaging(0.948) TCGA-BR-7197-01 X 135638646 135638646 T G VGLL1 Missense_Mutation p.L242R 0.65 tolerated_low_confidence(0.09) benign(0.011) TCGA-BR-7197-01 X 142967519 142967519 T C UBE2NL Missense_Mutation p.L106P 0.54 deleterious(0) probably_damaging(0.983) TCGA-BR-7197-01 X 20173605 20173605 G A RPS6KA3 Missense_Mutation p.R712C 0.32 deleterious(0.02) benign(0) TCGA-BR-7197-01 X 22292314 22292314 G A ZNF645 Silent p.T402T 0.36 TCGA-BR-7197-01 X 301618 301624 GAACATG - PPP2R3B Frame_Shift_Del p.M410Sfs*47 0.32 TCGA-BR-7197-01 X 37028374 37028374 C T FAM47C Missense_Mutation p.R631C 0.30 tolerated(0.27) benign(0.003) TCGA-BR-7197-01 X 47030564 47030564 G A RBM10 Silent p.E113E 0.26 TCGA-BR-7197-01 X 54228489 54228489 T G WNK3 Missense_Mutation p.S1670R 0.27 deleterious(0) probably_damaging(0.999) TCGA-BR-7197-01 X 65242605 65242605 T A VSIG4 Intron 0.24 TCGA-BR-7703-01 10 102795417 102795417 T C SFXN3 Missense_Mutation p.F113L 0.09 deleterious(0.03) benign(0.028) TCGA-BR-7703-01 10 102987488 102987488 G A LBX1 Missense_Mutation p.R129C 0.05 deleterious(0) probably_damaging(1) TCGA-BR-7703-01 10 103541521 103541521 G A NPM3 Missense_Mutation p.P170L 0.27 deleterious(0) possibly_damaging(0.834) TCGA-BR-7703-01 10 103871259 103871259 C T LDB1 Silent p.P20P 0.17 TCGA-BR-7703-01 10 104119976 104119976 C T GBF1 Missense_Mutation p.R405C 0.06 deleterious(0) probably_damaging(0.994) TCGA-BR-7703-01 10 106074099 106074099 C A ITPRIP 3'UTR 0.23 TCGA-BR-7703-01 10 108923921 108923921 C G SORCS1 Missense_Mutation p.E122Q 0.23 tolerated_low_confidence(0.46) benign(0.014) TCGA-BR-7703-01 10 112724378 112724378 G A SHOC2 Missense_Mutation p.A88T 0.28 tolerated(0.62) benign(0.002) TCGA-BR-7703-01 10 114912188 114912188 C T TCF7L2 Missense_Mutation p.R420W 0.32 deleterious(0) probably_damaging(0.999) TCGA-BR-7703-01 10 118434447 118434447 G A HSPA12A Missense_Mutation p.R625C 0.38 tolerated(0.27) benign(0.009) TCGA-BR-7703-01 10 118713647 118713647 A G KIAA1598 Silent p.T114T 0.29 TCGA-BR-7703-01 10 11971928 11971928 G A UPF2 Missense_Mutation p.R1249W 0.08 deleterious(0) possibly_damaging(0.551) TCGA-BR-7703-01 10 120354648 120354648 C T PRLHR Missense_Mutation p.G37R 0.26 tolerated(0.52) benign(0.015) TCGA-BR-7703-01 10 128974289 128974289 T - FAM196A Frame_Shift_Del p.K124Rfs*21 0.19 TCGA-BR-7703-01 10 13228168 13228168 G A MCM10 Missense_Mutation p.C369Y 0.40 deleterious(0) probably_damaging(0.994) TCGA-BR-7703-01 10 134916258 134916258 G A GPR123 Missense_Mutation p.A105T 0.30 deleterious(0) probably_damaging(0.999) TCGA-BR-7703-01 10 135083962 135083962 G A ADAM8 Missense_Mutation p.R563C 0.39 deleterious(0) probably_damaging(0.998) TCGA-BR-7703-01 10 1406001 1406001 C T ADARB2 Missense_Mutation p.R100Q 0.46 tolerated(0.12) probably_damaging(0.996) TCGA-BR-7703-01 10 25284784 25284784 G A ENKUR Missense_Mutation p.R80W 0.29 tolerated(0.15) benign(0.004) TCGA-BR-7703-01 10 28409129 28409129 T A MPP7 Missense_Mutation p.Q294L 0.37 deleterious(0) benign(0.065) TCGA-BR-7703-01 10 31137596 31137596 G A ZNF438 Nonsense_Mutation p.R580* 0.28 TCGA-BR-7703-01 10 37430700 37430700 C A ANKRD30A Missense_Mutation p.P236H 0.22 deleterious(0.02) possibly_damaging(0.769) TCGA-BR-7703-01 10 38120778 38120778 C T ZNF248 Missense_Mutation p.C502Y 0.22 tolerated(0.2) probably_damaging(0.998) TCGA-BR-7703-01 10 46967470 46967470 G A SYT15 Missense_Mutation p.R203C 0.14 tolerated(0.15) benign(0.02) TCGA-BR-7703-01 10 48389220 48389220 G C RBP3 Missense_Mutation p.A553G 0.22 deleterious(0) possibly_damaging(0.466) TCGA-BR-7703-01 10 51581288 51581289 - A NCOA4 Frame_Shift_Ins p.P148Afs*2 0.23 TCGA-BR-7703-01 10 60994193 60994193 G A PHYHIPL Missense_Mutation p.R79H 0.24 deleterious_low_confidence(0.05) benign(0.327) TCGA-BR-7703-01 10 70673882 70673882 A - DDX50 Frame_Shift_Del p.K339Nfs*3 0.28 TCGA-BR-7703-01 10 73270932 73270932 C T CDH23-AS1 Intron 0.19 TCGA-BR-7703-01 10 73511467 73511467 G - C10orf54 Frame_Shift_Del p.L286Cfs*51 0.31 TCGA-BR-7703-01 10 75868773 75868773 T C VCL Silent p.G868G 0.25 TCGA-BR-7703-01 10 7849654 7849654 T - ATP5C1 3'UTR 0.23 TCGA-BR-7703-01 10 79397198 79397198 G A KCNMA1 Missense_Mutation p.A68V 0.17 tolerated_low_confidence(0.09) benign(0.157) TCGA-BR-7703-01 10 79795304 79795304 G A RPS24 Silent p.V35V 0.37 TCGA-BR-7703-01 10 8100351 8100351 G A GATA3 Missense_Mutation p.A109T 0.18 tolerated(0.48) benign(0.022) TCGA-BR-7703-01 10 8115975 8115975 G A GATA3 Missense_Mutation p.A442T 0.07 tolerated(0.12) probably_damaging(0.999) TCGA-BR-7703-01 10 91353063 91353063 A G PANK1 Missense_Mutation p.M501T 0.27 tolerated(0.08) possibly_damaging(0.677) TCGA-BR-7703-01 10 98386589 98386589 C T PIK3AP1 Silent p.T515T 0.19 TCGA-BR-7703-01 11 100933287 100933287 T C PGR Silent p.A701A 0.03 TCGA-BR-7703-01 11 100999479 100999479 C A PGR Missense_Mutation p.S108I 0.24 deleterious_low_confidence(0) benign(0.202) TCGA-BR-7703-01 11 1016092 1016092 G T MUC6 Missense_Mutation p.P2237T 0.31 benign(0) TCGA-BR-7703-01 11 10524329 10524329 G T AMPD3 Missense_Mutation p.S644I 0.26 deleterious(0) probably_damaging(0.993) TCGA-BR-7703-01 11 10826480 10826480 G T EIF4G2 Missense_Mutation p.L111I 0.37 deleterious(0) probably_damaging(0.996) TCGA-BR-7703-01 11 111156795 111156795 A T C11orf53 3'UTR 0.39 TCGA-BR-7703-01 11 111385697 111385697 G A C11orf88 Missense_Mutation p.R63H 0.30 deleterious(0.04) benign(0.28) TCGA-BR-7703-01 11 111431078 111431078 C T LAYN Silent p.S348S 0.25 TCGA-BR-7703-01 11 11374613 11374613 G C CSNK2A3 Missense_Mutation p.H18Q 0.32 tolerated(0.98) benign(0.001) TCGA-BR-7703-01 11 114401086 114401086 T C NXPE1 Missense_Mutation p.H73R 0.29 tolerated(0.27) benign(0.008) TCGA-BR-7703-01 11 118918525 118918526 - C HYOU1 Frame_Shift_Ins p.A839Gfs*13 0.20 TCGA-BR-7703-01 11 119146846 119146846 T C CBL Splice_Site p.X336_splice 0.28 TCGA-BR-7703-01 11 124005694 124005694 G - VWA5A Frame_Shift_Del p.G439Afs*20 0.17 TCGA-BR-7703-01 11 124189676 124189676 C A OR8D2 Missense_Mutation p.V140F 0.19 deleterious(0.03) benign(0.361) TCGA-BR-7703-01 11 125548009 125548009 G T ACRV1 Missense_Mutation p.T79N 0.17 tolerated(0.28) benign(0.042) TCGA-BR-7703-01 11 126162737 126162737 C T TIRAP Silent p.L145L 0.27 TCGA-BR-7703-01 11 130069878 130069878 C T ST14 Missense_Mutation p.R614C 0.39 deleterious(0) probably_damaging(0.998) TCGA-BR-7703-01 11 133791120 133791120 C T IGSF9B Missense_Mutation p.V834M 0.19 deleterious(0) possibly_damaging(0.454) TCGA-BR-7703-01 11 18158959 18158959 G A MRGPRX3 Silent p.A70A 0.28 TCGA-BR-7703-01 11 18736149 18736149 G A IGSF22 Silent p.S518S 0.32 TCGA-BR-7703-01 11 22301182 22301182 G A ANO5 Missense_Mutation p.M871I 0.05 tolerated(0.07) benign(0.004) TCGA-BR-7703-01 11 22833350 22833350 C T GAS2 Missense_Mutation p.H244Y 0.24 deleterious(0) possibly_damaging(0.733) TCGA-BR-7703-01 11 31327839 31327839 T C DCDC1 Silent p.T177T 0.08 TCGA-BR-7703-01 11 33731873 33731873 G A CD59 Silent p.N62N 0.44 TCGA-BR-7703-01 11 3726529 3726529 G A NUP98 Missense_Mutation p.R995C 0.17 tolerated(0.1) possibly_damaging(0.707) TCGA-BR-7703-01 11 43913679 43913679 C T ALKBH3 Silent p.H153H 0.22 TCGA-BR-7703-01 11 46726219 46726219 A G ZNF408 Silent p.P323P 0.06 TCGA-BR-7703-01 11 55371101 55371101 C T OR4C11 Missense_Mutation p.G250D 0.27 deleterious(0.01) possibly_damaging(0.903) TCGA-BR-7703-01 11 55418792 55418792 C T OR4S2 Missense_Mutation p.T138I 0.22 tolerated(0.2) benign(0.048) TCGA-BR-7703-01 11 55735148 55735148 C T OR10AG1 Silent p.L264L 0.10 TCGA-BR-7703-01 11 57571140 57571140 G A CTNND1 Missense_Mutation p.V490M 0.40 deleterious(0) probably_damaging(0.995) TCGA-BR-7703-01 11 58275490 58275490 A - OR5B21 Frame_Shift_Del p.L30Yfs*14 0.24 TCGA-BR-7703-01 11 58384917 58384917 C T ZFP91 Missense_Mutation p.T484M 0.37 deleterious_low_confidence(0) possibly_damaging(0.563) TCGA-BR-7703-01 11 6048430 6048430 G T OR56A1 Missense_Mutation p.L169I 0.23 deleterious(0) possibly_damaging(0.589) TCGA-BR-7703-01 11 63719910 63719910 C T NAA40 Nonsense_Mutation p.R95* 0.27 TCGA-BR-7703-01 11 639781 639781 C T DRD4 Missense_Mutation p.R178C 0.19 deleterious(0) unknown(0) TCGA-BR-7703-01 11 64111563 64111563 G A CCDC88B Missense_Mutation p.G517D 0.31 tolerated_low_confidence(0.07) benign(0.01) TCGA-BR-7703-01 11 64677303 64677303 G A ATG2A Missense_Mutation p.R653W 0.29 deleterious(0) probably_damaging(0.999) TCGA-BR-7703-01 11 64879067 64879067 C T VPS51 3'UTR 0.36 TCGA-BR-7703-01 11 64973987 64973987 G A CAPN1 Silent p.A469A 0.04 TCGA-BR-7703-01 11 6499032 6499032 C A ARFIP2 Missense_Mutation p.Q262H 0.31 deleterious(0) possibly_damaging(0.84) TCGA-BR-7703-01 11 66189603 66189603 C T NPAS4 Missense_Mutation p.A63V 0.39 tolerated(0.24) benign(0.002) TCGA-BR-7703-01 11 66407528 66407528 G A RBM4 Missense_Mutation p.V116I 0.23 tolerated(0.06) benign(0.19) TCGA-BR-7703-01 11 67267649 67267649 G - PITPNM1 Frame_Shift_Del p.P295Qfs*74 0.26 TCGA-BR-7703-01 11 67432885 67432885 C T ALDH3B2 Missense_Mutation p.D193N 0.25 tolerated(0.09) benign(0.024) TCGA-BR-7703-01 11 67789211 67789211 G A ALDH3B1 Missense_Mutation p.D273N 0.05 tolerated(0.1) benign(0.008) TCGA-BR-7703-01 11 68201267 68201267 G A LRP5 Missense_Mutation p.A1321T 0.34 tolerated(0.7) benign(0.016) TCGA-BR-7703-01 11 68478438 68478438 A G MTL5 Missense_Mutation p.M413T 0.25 tolerated(0.08) benign(0.004) TCGA-BR-7703-01 11 68704522 68704522 G A IGHMBP2 Silent p.Q858Q 0.09 TCGA-BR-7703-01 11 6942990 6942991 - T OR2D3 Frame_Shift_Ins p.S255Ffs*34 0.27 TCGA-BR-7703-01 11 71249165 71249165 G - KRTAP5-8 Frame_Shift_Del p.G23Dfs*192 0.11 TCGA-BR-7703-01 11 71952153 71952153 C T PHOX2A Missense_Mutation p.R133H 0.12 deleterious(0) possibly_damaging(0.501) TCGA-BR-7703-01 11 771381 771381 G A PDDC1 Missense_Mutation p.P166S 0.19 tolerated(0.18) benign(0.061) TCGA-BR-7703-01 11 92569759 92569759 C T FAT3 Missense_Mutation p.P3372S 0.25 benign(0.014) TCGA-BR-7703-01 11 93754625 93754626 - T HEPHL1 Frame_Shift_Ins p.G32Wfs*79 0.20 TCGA-BR-7703-01 11 95712528 95712528 G T MAML2 Missense_Mutation p.Q1019K 0.16 unknown(0) TCGA-BR-7703-01 12 101767445 101767445 A G UTP20 Missense_Mutation p.K2344R 0.24 tolerated(0.05) benign(0.048) TCGA-BR-7703-01 12 102091823 102091823 G C CHPT1 Missense_Mutation p.A62P 0.23 deleterious(0) probably_damaging(0.995) TCGA-BR-7703-01 12 104461721 104461723 TTA - HCFC2 Splice_Site p.X105_splice 0.27 TCGA-BR-7703-01 12 108985723 108985723 C G TMEM119 Missense_Mutation p.G146A 0.36 deleterious(0) probably_damaging(1) TCGA-BR-7703-01 12 109671600 109671600 C - ACACB Frame_Shift_Del p.L1398Sfs*26 0.10 TCGA-BR-7703-01 12 112237855 112237855 C T ALDH2 Missense_Mutation p.A465V 0.31 tolerated(0.09) benign(0.371) TCGA-BR-7703-01 12 113907091 113907091 C T LHX5 Missense_Mutation p.R78H 0.12 deleterious(0.01) possibly_damaging(0.846) TCGA-BR-7703-01 12 115120667 115120667 C T TBX3 Nonsense_Mutation p.W113* 0.23 TCGA-BR-7703-01 12 118468987 118468987 G T RFC5 Missense_Mutation p.E309D 0.06 deleterious(0.02) possibly_damaging(0.769) TCGA-BR-7703-01 12 118474278 118474278 C T WSB2 Missense_Mutation p.R233Q 0.36 deleterious(0.04) benign(0.185) TCGA-BR-7703-01 12 118682752 118682752 T C TAOK3 Missense_Mutation p.S47G 0.33 tolerated(0.16) benign(0) TCGA-BR-7703-01 12 120589077 120589077 C T GCN1L1 Missense_Mutation p.R1394H 0.14 probably_damaging(0.999) TCGA-BR-7703-01 12 121176396 121176396 G A ACADS Missense_Mutation p.A286T 0.39 deleterious(0) possibly_damaging(0.694) TCGA-BR-7703-01 12 122217363 122217363 C T TMEM120B 3'UTR 0.39 TCGA-BR-7703-01 12 123705999 123705999 T A MPHOSPH9 Silent p.V112V 0.27 TCGA-BR-7703-01 12 132329917 132329917 G A MMP17 Missense_Mutation p.R376Q 0.10 tolerated(0.07) probably_damaging(0.988) TCGA-BR-7703-01 12 132395332 132395332 T C ULK1 Missense_Mutation p.L312P 0.32 deleterious(0.02) probably_damaging(0.999) TCGA-BR-7703-01 12 132401026 132401027 - C ULK1 Frame_Shift_Ins p.R657Sfs*44 0.16 TCGA-BR-7703-01 12 133304695 133304695 G A ANKLE2 Silent p.D846D 0.32 TCGA-BR-7703-01 12 15636953 15636953 G A PTPRO Missense_Mutation p.V41I 0.17 tolerated_low_confidence(0.24) benign(0.002) TCGA-BR-7703-01 12 2062122 2062122 A - DCP1B Frame_Shift_Del p.F328Lfs*55 0.25 TCGA-BR-7703-01 12 20903795 20903795 C T SLCO1C1 Missense_Mutation p.T662I 0.34 tolerated(0.17) benign(0.001) TCGA-BR-7703-01 12 21325709 21325709 C T SLCO1B1 Silent p.D70D 0.18 TCGA-BR-7703-01 12 22486986 22486986 C - ST8SIA1 Frame_Shift_Del p.V61Cfs*34 0.18 TCGA-BR-7703-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.22 deleterious(0) benign(0.361) TCGA-BR-7703-01 12 274932 274932 G A IQSEC3 Silent p.S949S 0.26 TCGA-BR-7703-01 12 30816463 30816463 A G IPO8 Silent p.A518A 0.05 TCGA-BR-7703-01 12 31135587 31135587 G A TSPAN11 Missense_Mutation p.G193S 0.40 tolerated(0.1) possibly_damaging(0.775) TCGA-BR-7703-01 12 31820818 31820818 G A METTL20 Missense_Mutation p.S228N 0.07 tolerated(0.54) benign(0.006) TCGA-BR-7703-01 12 31945134 31945134 T C H3F3C 5'UTR 0.32 TCGA-BR-7703-01 12 32974415 32974415 C T PKP2 Missense_Mutation p.V674M 0.30 deleterious(0) benign(0.406) TCGA-BR-7703-01 12 33592483 33592483 T - SYT10 5'UTR 0.23 TCGA-BR-7703-01 12 39997743 39997745 CTC - ABCD2 In_Frame_Del p.G490del 0.36 TCGA-BR-7703-01 12 4460522 4460522 C T C12orf5 Silent p.P120P 0.39 TCGA-BR-7703-01 12 49220259 49220259 G A CACNB3 Silent p.S284S 0.42 TCGA-BR-7703-01 12 50481152 50481152 C T SMARCD1 Missense_Mutation p.R180W 0.06 deleterious(0) probably_damaging(0.997) TCGA-BR-7703-01 12 51279034 51279034 G A TMPRSS12 Missense_Mutation p.A220T 0.35 tolerated(0.41) benign(0.005) TCGA-BR-7703-01 12 52385715 52385715 C T ACVR1B Nonsense_Mutation p.R485* 0.43 TCGA-BR-7703-01 12 53516883 53516883 C T SOAT2 Nonsense_Mutation p.R419* 0.36 TCGA-BR-7703-01 12 54348881 54348881 G A HOXC12 Silent p.P56P 0.29 TCGA-BR-7703-01 12 54428224 54428224 G A HOXC5 Missense_Mutation p.R206H 0.26 deleterious(0) probably_damaging(0.998) TCGA-BR-7703-01 12 54764440 54764440 G C ZNF385A Missense_Mutation p.H300Q 0.45 deleterious(0.03) probably_damaging(0.999) TCGA-BR-7703-01 12 54764723 54764723 G C ZNF385A Silent p.V274V 0.45 TCGA-BR-7703-01 12 54764782 54764782 G A ZNF385A Missense_Mutation p.P255S 0.54 tolerated(0.26) benign(0.016) TCGA-BR-7703-01 12 54764831 54764831 G C ZNF385A Missense_Mutation p.I238M 0.35 deleterious(0.01) probably_damaging(0.947) TCGA-BR-7703-01 12 54765308 54765308 G C ZNF385A Missense_Mutation p.L205V 0.43 tolerated(0.18) probably_damaging(0.996) TCGA-BR-7703-01 12 55038966 55038966 C T DCD Missense_Mutation p.V94M 0.22 deleterious_low_confidence(0.05) possibly_damaging(0.791) TCGA-BR-7703-01 12 57569406 57569406 C T LRP1 Silent p.C1237C 0.20 TCGA-BR-7703-01 12 57572242 57572242 G - LRP1 Frame_Shift_Del p.E1490Rfs*80 0.27 TCGA-BR-7703-01 12 6709750 6709750 C T CHD4 Missense_Mutation p.R338H 0.28 deleterious(0.03) possibly_damaging(0.84) TCGA-BR-7703-01 12 6936082 6936082 C - GPR162 Frame_Shift_Del p.P495Hfs*60 0.24 TCGA-BR-7703-01 12 85279797 85279797 G A SLC6A15 Missense_Mutation p.L114F 0.51 deleterious(0) possibly_damaging(0.873) TCGA-BR-7703-01 12 9001489 9001489 G A A2ML1 Silent p.T669T 0.29 TCGA-BR-7703-01 12 91550892 91550892 G A DCN Silent p.Y204Y 0.11 TCGA-BR-7703-01 12 98941485 98941486 - A TMPO Frame_Shift_Ins p.R300Tfs*36 0.13 TCGA-BR-7703-01 13 100543659 100543660 - A CLYBL Frame_Shift_Ins p.*341Mfs*4 0.27 TCGA-BR-7703-01 13 103339401 103339401 C A METTL21C Missense_Mutation p.A97S 0.32 deleterious(0.02) possibly_damaging(0.849) TCGA-BR-7703-01 13 103703660 103703660 C T SLC10A2 Silent p.A236A 0.26 TCGA-BR-7703-01 13 107822911 107822911 C A FAM155A Missense_Mutation p.Q437H 0.32 tolerated(0.76) benign(0.001) TCGA-BR-7703-01 13 109661297 109661297 T C MYO16 Missense_Mutation p.L810P 0.26 deleterious(0) probably_damaging(1) TCGA-BR-7703-01 13 20277345 20277346 AA - PSPC1 Frame_Shift_Del p.F514* 0.17 TCGA-BR-7703-01 13 24465898 24465898 G A C1QTNF9B Missense_Mutation p.R178W 0.11 deleterious(0) possibly_damaging(0.772) TCGA-BR-7703-01 13 25745468 25745468 G A AMER2 Missense_Mutation p.P97L 0.36 tolerated(0.24) benign(0.036) TCGA-BR-7703-01 13 28597513 28597513 C T FLT3 Missense_Mutation p.G798R 0.21 deleterious(0) probably_damaging(0.999) TCGA-BR-7703-01 13 33017425 33017425 G A N4BP2L2 Nonsense_Mutation p.Q417* 0.28 TCGA-BR-7703-01 13 33684151 33684151 C A STARD13 Missense_Mutation p.R969L 0.23 deleterious(0) probably_damaging(0.991) TCGA-BR-7703-01 13 42189137 42189137 G A VWA8 Silent p.G1565G 0.27 TCGA-BR-7703-01 13 47315868 47315868 C T LRCH1 Missense_Mutation p.A726V 0.29 tolerated(0.1) benign(0.01) TCGA-BR-7703-01 13 53421242 53421242 C T PCDH8 Missense_Mutation p.A444T 0.25 tolerated(0.08) benign(0.049) TCGA-BR-7703-01 13 67801679 67801679 T C PCDH9 Silent p.A298A 0.31 TCGA-BR-7703-01 13 73636730 73636730 A - KLF5 Frame_Shift_Del p.I332Lfs*59 0.25 TCGA-BR-7703-01 13 77754337 77754337 G T MYCBP2 Silent p.S1648S 0.04 TCGA-BR-7703-01 14 100363543 100363543 G A EML1 Missense_Mutation p.V266I 0.40 deleterious(0.04) possibly_damaging(0.53) TCGA-BR-7703-01 14 103430922 103430922 C T CDC42BPB Silent p.S881S 0.25 TCGA-BR-7703-01 14 106110197 106110197 C T IGHG2 Missense_Mutation p.V141M 0.34 tolerated(0.16) benign(0.234) TCGA-BR-7703-01 14 21469346 21469346 G T SLC39A2 Missense_Mutation p.G180W 0.29 deleterious(0) probably_damaging(1) TCGA-BR-7703-01 14 21681143 21681143 G A HNRNPC Missense_Mutation p.R180W 0.25 tolerated(0.11) benign(0.002) TCGA-BR-7703-01 14 23853917 23853917 T C MYH6 Missense_Mutation p.M1767V 0.12 deleterious(0.02) possibly_damaging(0.907) TCGA-BR-7703-01 14 23858161 23858161 C T MYH6 Missense_Mutation p.R1361H 0.32 deleterious(0.01) probably_damaging(0.952) TCGA-BR-7703-01 14 24567477 24567479 CTT - PCK2 In_Frame_Del p.S115del 0.35 TCGA-BR-7703-01 14 24606965 24606965 T G PSME1 Missense_Mutation p.L117V 0.06 tolerated(1) benign(0.007) TCGA-BR-7703-01 14 29237784 29237784 C A FOXG1 Silent p.S433S 0.30 TCGA-BR-7703-01 14 45432820 45432820 T C FAM179B Missense_Mutation p.L399P 0.20 deleterious(0) probably_damaging(0.975) TCGA-BR-7703-01 14 59112499 59112499 G T DACT1 Missense_Mutation p.Q386H 0.22 tolerated(0.35) probably_damaging(0.919) TCGA-BR-7703-01 14 61115476 61115476 C T SIX1 Silent p.A144A 0.23 TCGA-BR-7703-01 14 64465745 64465745 T C SYNE2 Missense_Mutation p.L1156P 0.12 probably_damaging(1) TCGA-BR-7703-01 14 64644169 64644169 G A SYNE2 Missense_Mutation p.E5842K 0.22 possibly_damaging(0.845) TCGA-BR-7703-01 14 64692078 64692078 G A SYNE2 Missense_Mutation p.R6853K 0.20 probably_damaging(0.997) TCGA-BR-7703-01 14 65252572 65252572 T C SPTB Missense_Mutation p.N1220S 0.26 tolerated(0.13) benign(0.273) TCGA-BR-7703-01 14 66136109 66136109 G A FUT8 Missense_Mutation p.R249H 0.26 deleterious(0.02) benign(0.002) TCGA-BR-7703-01 14 67576930 67576930 C T GPHN Missense_Mutation p.A456V 0.34 tolerated(0.05) probably_damaging(0.995) TCGA-BR-7703-01 14 72976872 72976872 A G RGS6 Missense_Mutation p.S326G 0.14 tolerated(0.14) benign(0.001) TCGA-BR-7703-01 14 74042323 74042323 T - ACOT2 3'UTR 0.19 TCGA-BR-7703-01 14 74753146 74753146 C T ABCD4 3'UTR 0.11 TCGA-BR-7703-01 14 75016599 75016599 C - LTBP2 Frame_Shift_Del p.V586* 0.20 TCGA-BR-7703-01 14 86089465 86089465 G A FLRT2 Missense_Mutation p.S536N 0.32 tolerated(0.5) benign(0.001) TCGA-BR-7703-01 14 90651177 90651177 C T KCNK13 Silent p.L353L 0.22 TCGA-BR-7703-01 14 91770229 91770229 C T CCDC88C Missense_Mutation p.E1151K 0.20 deleterious(0.04) possibly_damaging(0.852) TCGA-BR-7703-01 14 91942165 91942165 A - SMEK1 Intron 0.10 TCGA-BR-7703-01 14 92472038 92472038 T C TRIP11 Missense_Mutation p.H761R 0.16 tolerated(0.06) benign(0.005) TCGA-BR-7703-01 14 93424683 93424683 A C ITPK1 Missense_Mutation p.L178R 0.28 deleterious(0) probably_damaging(0.999) TCGA-BR-7703-01 14 94395175 94395175 A G FAM181A Missense_Mutation p.T244A 0.44 tolerated(1) benign(0) TCGA-BR-7703-01 14 95922000 95922000 G A SYNE3 Missense_Mutation p.A284V 0.18 tolerated(0.61) benign(0) TCGA-BR-7703-01 15 100250898 100250898 C T MEF2A Silent p.L351L 0.31 TCGA-BR-7703-01 15 25331742 25331742 G T SNORD116-19 RNA 0.37 TCGA-BR-7703-01 15 28408263 28408263 C T HERC2 Missense_Mutation p.G3575S 0.28 benign(0.099) TCGA-BR-7703-01 15 28437159 28437159 C T HERC2 Missense_Mutation p.R2800H 0.32 probably_damaging(0.946) TCGA-BR-7703-01 15 30065503 30065504 - A TJP1 Frame_Shift_Ins p.Q48Sfs*19 0.16 TCGA-BR-7703-01 15 37184485 37184485 G A MEIS2 Silent p.H441H 0.29 TCGA-BR-7703-01 15 38614539 38614539 C T SPRED1 Missense_Mutation p.T102M 0.19 deleterious(0) probably_damaging(0.99) TCGA-BR-7703-01 15 40322596 40322596 T C EIF2AK4 Missense_Mutation p.I1533T 0.23 tolerated(1) benign(0.003) TCGA-BR-7703-01 15 40937929 40937929 G T CASC5 Nonsense_Mutation p.G2015* 0.15 TCGA-BR-7703-01 15 42106789 42106789 C T MAPKBP1 Missense_Mutation p.T347I 0.25 deleterious(0) benign(0.061) TCGA-BR-7703-01 15 42150833 42150833 G A SPTBN5 Silent p.D2731D 0.17 TCGA-BR-7703-01 15 43317086 43317086 C T UBR1 Missense_Mutation p.V894I 0.06 tolerated(0.97) benign(0) TCGA-BR-7703-01 15 50931657 50931658 - C TRPM7 Frame_Shift_Ins p.V209Sfs*3 0.30 TCGA-BR-7703-01 15 51634200 51634200 G A GLDN Missense_Mutation p.E107K 0.27 deleterious(0.02) benign(0.242) TCGA-BR-7703-01 15 54025291 54025291 C T WDR72 Missense_Mutation p.S19N 0.24 tolerated(0.05) possibly_damaging(0.874) TCGA-BR-7703-01 15 54307129 54307129 G A UNC13C Missense_Mutation p.D677N 0.38 tolerated_low_confidence(0.59) benign(0.001) TCGA-BR-7703-01 15 59180672 59180672 G A SLTM Missense_Mutation p.R763C 0.37 deleterious(0) probably_damaging(0.998) TCGA-BR-7703-01 15 63882887 63882887 C T USP3 Silent p.Y475Y 0.30 TCGA-BR-7703-01 15 66607413 66607413 G A DIS3L Missense_Mutation p.R285Q 0.04 deleterious(0.02) benign(0.135) TCGA-BR-7703-01 15 74337044 74337044 C T PML Nonsense_Mutation p.Q782* 0.13 TCGA-BR-7703-01 15 77064150 77064150 T - SCAPER Frame_Shift_Del p.N394Mfs*12 0.16 TCGA-BR-7703-01 15 78568023 78568023 C T DNAJA4 Missense_Mutation p.T306M 0.23 tolerated(0.08) benign(0.032) TCGA-BR-7703-01 15 80215330 80215330 C A C15orf37 Missense_Mutation p.T72N 0.17 possibly_damaging(0.607) TCGA-BR-7703-01 15 81234667 81234667 G A KIAA1199 Missense_Mutation p.A1230T 0.27 tolerated(0.1) benign(0.273) TCGA-BR-7703-01 15 81627235 81627235 G A TMC3 Missense_Mutation p.S762L 0.17 deleterious(0.05) benign(0.006) TCGA-BR-7703-01 15 83674353 83674354 - T C15orf40 Intron 0.26 TCGA-BR-7703-01 15 86278855 86278855 A - AKAP13 Frame_Shift_Del p.K2508Rfs*50 0.31 TCGA-BR-7703-01 15 89074847 89074847 G A DET1 Silent p.G41G 0.27 TCGA-BR-7703-01 15 91040462 91040462 A G IQGAP1 Splice_Site p.X1584_splice 0.14 TCGA-BR-7703-01 15 94901733 94901733 C T MCTP2 Missense_Mutation p.P398L 0.08 deleterious(0) probably_damaging(0.999) TCGA-BR-7703-01 16 11846657 11846657 T - ZC3H7A Frame_Shift_Del p.N865Tfs*47 0.23 TCGA-BR-7703-01 16 12492337 12492338 AG - SNX29 Frame_Shift_Del p.S646Ffs*5 0.25 TCGA-BR-7703-01 16 12798506 12798506 C A CPPED1 Missense_Mutation p.K230N 0.27 tolerated(0.16) benign(0.009) TCGA-BR-7703-01 16 14989451 14989451 C - NOMO1 Frame_Shift_Del p.P1207Qfs*84 0.13 TCGA-BR-7703-01 16 15204394 15204394 T C RP11-1186N24.5 RNA 0.13 TCGA-BR-7703-01 16 1817234 1817234 A G MAPK8IP3 Missense_Mutation p.D1057G 0.05 tolerated(0.15) benign(0.235) TCGA-BR-7703-01 16 1889367 1889367 A C MEIOB Missense_Mutation p.F369L 0.12 tolerated(0.72) benign(0.002) TCGA-BR-7703-01 16 19455473 19455474 - G TMC5 Frame_Shift_Ins p.E289Rfs*3 0.20 TCGA-BR-7703-01 16 2013100 2013101 GA - RPS2 Intron 0.30 TCGA-BR-7703-01 16 22358554 22358554 T G CDR2 Missense_Mutation p.K366T 0.19 deleterious(0) possibly_damaging(0.888) TCGA-BR-7703-01 16 2285460 2285460 C T E4F1 Nonsense_Mutation p.Q748* 0.32 TCGA-BR-7703-01 16 26146979 26146979 A G HS3ST4 Missense_Mutation p.T261A 0.26 deleterious(0.01) probably_damaging(0.997) TCGA-BR-7703-01 16 27489822 27489822 T - GTF3C1 Frame_Shift_Del p.D1410Ifs*23 0.08 TCGA-BR-7703-01 16 28847356 28847356 C - ATXN2L Frame_Shift_Del p.Q1002Kfs*95 0.22 TCGA-BR-7703-01 16 30198745 30198745 G A CORO1A Missense_Mutation p.V227M 0.31 deleterious(0.01) possibly_damaging(0.522) TCGA-BR-7703-01 16 30616501 30616501 C T ZNF689 Missense_Mutation p.R196Q 0.30 tolerated(0.5) possibly_damaging(0.734) TCGA-BR-7703-01 16 30777494 30777494 T A RNF40 Missense_Mutation p.L335Q 0.41 deleterious(0.03) benign(0.345) TCGA-BR-7703-01 16 30794713 30794713 G A ZNF629 Silent p.H312H 0.05 TCGA-BR-7703-01 16 30795016 30795016 G A ZNF629 Silent p.C211C 0.15 TCGA-BR-7703-01 16 3433419 3433419 A G ZSCAN32 Silent p.S297S 0.05 TCGA-BR-7703-01 16 3632331 3632331 G T SLX4 3'UTR 0.35 TCGA-BR-7703-01 16 48304164 48304164 A G LONP2 Missense_Mutation p.Q407R 0.04 deleterious(0) probably_damaging(0.975) TCGA-BR-7703-01 16 49670324 49670324 C T ZNF423 Silent p.P913P 0.37 TCGA-BR-7703-01 16 50338342 50338342 G A ADCY7 Silent p.A480A 0.15 TCGA-BR-7703-01 16 50711346 50711346 C T SNX20 Missense_Mutation p.G31D 0.21 tolerated(0.14) possibly_damaging(0.549) TCGA-BR-7703-01 16 57113198 57113201 AGAT - NLRC5 Frame_Shift_Del p.I1745Tfs*27 0.16 TCGA-BR-7703-01 16 57690467 57690467 G A GPR56 Missense_Mutation p.V369I 0.39 tolerated(0.7) benign(0.004) TCGA-BR-7703-01 16 67209050 67209050 A C NOL3 3'UTR 0.15 TCGA-BR-7703-01 16 67709273 67709273 G A GFOD2 Missense_Mutation p.R315C 0.09 deleterious(0) probably_damaging(0.985) TCGA-BR-7703-01 16 70542363 70542363 C T COG4 Missense_Mutation p.R336Q 0.15 tolerated(1) benign(0.002) TCGA-BR-7703-01 16 70972545 70972545 G A HYDIN Nonsense_Mutation p.Q2323* 0.27 TCGA-BR-7703-01 16 71054191 71054191 G A HYDIN Silent p.Y1072Y 0.33 TCGA-BR-7703-01 16 71423676 71423676 A G CALB2 Missense_Mutation p.N242D 0.33 tolerated(0.61) benign(0) TCGA-BR-7703-01 16 720944 720944 C T RHOT2 Missense_Mutation p.T231M 0.16 tolerated(0.22) benign(0.006) TCGA-BR-7703-01 16 72184645 72184645 C A PMFBP1 Missense_Mutation p.L166F 0.05 tolerated(0.07) probably_damaging(0.998) TCGA-BR-7703-01 16 72822363 72822363 G A ZFHX3 Missense_Mutation p.T3271M 0.41 unknown(0) TCGA-BR-7703-01 16 745926 745926 G A FBXL16 Intron 0.32 TCGA-BR-7703-01 16 7645563 7645563 G A RBFOX1 Missense_Mutation p.V181I 0.31 deleterious(0.01) possibly_damaging(0.745) TCGA-BR-7703-01 16 773012 773012 T C CCDC78 Missense_Mutation p.N403D 0.28 deleterious(0.01) probably_damaging(0.981) TCGA-BR-7703-01 16 77369762 77369762 C T ADAMTS18 Missense_Mutation p.G584R 0.44 deleterious(0.04) possibly_damaging(0.881) TCGA-BR-7703-01 16 842546 842546 G - CHTF18 Frame_Shift_Del p.L481Sfs*3 0.23 TCGA-BR-7703-01 16 84270710 84270710 C T KCNG4 Missense_Mutation p.A128T 0.11 tolerated(0.26) probably_damaging(0.993) TCGA-BR-7703-01 16 88600773 88600773 C T ZFPM1 Missense_Mutation p.R803C 0.30 tolerated(0.11) possibly_damaging(0.689) TCGA-BR-7703-01 16 88945788 88945788 C A CBFA2T3 Nonsense_Mutation p.E518* 0.28 TCGA-BR-7703-01 17 10219039 10219039 G T MYH13 Missense_Mutation p.L1319I 0.16 deleterious(0.02) benign(0.435) TCGA-BR-7703-01 17 16330184 16330184 T C TRPV2 Missense_Mutation p.L415P 0.30 tolerated(0.06) benign(0.068) TCGA-BR-7703-01 17 16843774 16843774 G A TNFRSF13B Missense_Mutation p.T166M 0.35 deleterious(0.01) probably_damaging(0.983) TCGA-BR-7703-01 17 17698668 17698668 G T RAI1 Missense_Mutation p.K802N 0.30 tolerated_low_confidence(0.25) benign(0.051) TCGA-BR-7703-01 17 18152659 18152659 C G FLII Missense_Mutation p.D614H 0.06 deleterious(0.01) possibly_damaging(0.853) TCGA-BR-7703-01 17 18416689 18416689 C T CTD-2303H24.2 RNA 0.70 TCGA-BR-7703-01 17 19318422 19318422 G A RNF112 Missense_Mutation p.A400T 0.50 tolerated(0.18) benign(0.182) TCGA-BR-7703-01 17 20109083 20109083 C T SPECC1 Missense_Mutation p.T574M 0.24 tolerated(0.15) benign(0.012) TCGA-BR-7703-01 17 20806031 20806031 G A RP11-344E13.3 RNA 0.47 TCGA-BR-7703-01 17 21318767 21318767 C T KCNJ12 Missense_Mutation p.T38M 0.12 deleterious(0.03) possibly_damaging(0.829) TCGA-BR-7703-01 17 21731489 21731489 C - UBBP4 Frame_Shift_Del p.D191Ifs*35 0.21 TCGA-BR-7703-01 17 26822686 26822686 C T SLC13A2 Missense_Mutation p.S490L 0.29 deleterious(0) probably_damaging(0.998) TCGA-BR-7703-01 17 26971123 26971123 A - KIAA0100 Frame_Shift_Del p.W51Gfs*77 0.24 TCGA-BR-7703-01 17 27893168 27893168 C T ABHD15 Missense_Mutation p.E273K 0.30 deleterious(0) possibly_damaging(0.701) TCGA-BR-7703-01 17 29167732 29167732 C T ATAD5 Missense_Mutation p.A725V 0.33 tolerated(0.73) benign(0) TCGA-BR-7703-01 17 29220338 29220338 G A ATAD5 Nonsense_Mutation p.W1489* 0.31 TCGA-BR-7703-01 17 30615897 30615897 G A RHBDL3 Silent p.K127K 0.30 TCGA-BR-7703-01 17 30696741 30696741 T C ZNF207 Missense_Mutation p.M483T 0.22 deleterious_low_confidence(0.01) unknown(0) TCGA-BR-7703-01 17 39975526 39975526 G A FKBP10 Silent p.P264P 0.23 TCGA-BR-7703-01 17 40690415 40690415 C T NAGLU Missense_Mutation p.A197V 0.30 deleterious(0) probably_damaging(0.977) TCGA-BR-7703-01 17 40966560 40966560 A G BECN1 Missense_Mutation p.M321T 0.27 tolerated(0.07) possibly_damaging(0.491) TCGA-BR-7703-01 17 41368528 41368528 G A TMEM106A Missense_Mutation p.E164K 0.30 tolerated(0.06) possibly_damaging(0.833) TCGA-BR-7703-01 17 41477713 41477713 C - ARL4D 3'UTR 0.28 TCGA-BR-7703-01 17 4173007 4173007 C T UBE2G1 3'UTR 0.18 TCGA-BR-7703-01 17 44101486 44101486 C T MAPT Silent p.L760L 0.27 TCGA-BR-7703-01 17 44248899 44248899 C - KANSL1 Frame_Shift_Del p.G204Vfs*2 0.16 TCGA-BR-7703-01 17 4455891 4455891 G A MYBBP1A Missense_Mutation p.P198S 0.25 tolerated(0.14) possibly_damaging(0.743) TCGA-BR-7703-01 17 47788753 47788754 - G FAM117A Frame_Shift_Ins p.L409Pfs*105 0.14 TCGA-BR-7703-01 17 4844271 4844272 - G RNF167 Frame_Shift_Ins p.L25Afs*71 0.38 TCGA-BR-7703-01 17 56247325 56247325 C T OR4D2 Silent p.F103F 0.28 TCGA-BR-7703-01 17 56557589 56557589 C T HSF5 Missense_Mutation p.R197Q 0.29 tolerated(0.19) possibly_damaging(0.637) TCGA-BR-7703-01 17 57290847 57290847 C T SMG8 Missense_Mutation p.P888L 0.04 deleterious(0) probably_damaging(1) TCGA-BR-7703-01 17 6023799 6023799 C T WSCD1 Missense_Mutation p.R516W 0.27 deleterious(0) probably_damaging(0.949) TCGA-BR-7703-01 17 61911083 61911083 C T SMARCD2 Splice_Site p.X394_splice 0.31 TCGA-BR-7703-01 17 61949825 61949825 A - CSH2 Intron 0.24 TCGA-BR-7703-01 17 62045681 62045681 C T SCN4A Silent p.S246S 0.26 TCGA-BR-7703-01 17 62144207 62144207 G A ERN1 Silent p.Y222Y 0.38 TCGA-BR-7703-01 17 62796707 62796707 C T PLEKHM1P RNA 0.28 TCGA-BR-7703-01 17 64026051 64026051 C T CEP112 Missense_Mutation p.E437K 0.28 deleterious(0) probably_damaging(0.997) TCGA-BR-7703-01 17 65340757 65340757 T - PSMD12 Frame_Shift_Del p.R350Gfs*5 0.26 TCGA-BR-7703-01 17 67024767 67024767 A G ABCA9 Silent p.Y508Y 0.07 TCGA-BR-7703-01 17 67251897 67251897 T C ABCA5 Missense_Mutation p.Y1318C 0.42 deleterious(0.01) possibly_damaging(0.566) TCGA-BR-7703-01 17 67270228 67270228 A G ABCA5 Missense_Mutation p.M879T 0.21 tolerated(0.13) possibly_damaging(0.464) TCGA-BR-7703-01 17 68128892 68128892 C T KCNJ16 Missense_Mutation p.R222C 0.40 deleterious(0) probably_damaging(0.999) TCGA-BR-7703-01 17 7077112 7077112 C T ASGR1 Missense_Mutation p.G248R 0.26 tolerated(0.16) probably_damaging(0.997) TCGA-BR-7703-01 17 72926834 72926834 C T OTOP2 Silent p.D368D 0.35 TCGA-BR-7703-01 17 7344777 7344778 TC - FGF11 Intron 0.48 TCGA-BR-7703-01 17 74003904 74003904 A G EVPL Silent p.S1794S 0.26 TCGA-BR-7703-01 17 7577523 7577523 G A TP53 Missense_Mutation p.T253I 0.47 deleterious(0) probably_damaging(1) TCGA-BR-7703-01 17 76134523 76134524 - T TMC8 Frame_Shift_Ins p.L544Sfs*267 0.22 TCGA-BR-7703-01 17 76482144 76482144 C A DNAH17 Missense_Mutation p.Q2377H 0.26 benign(0.047) TCGA-BR-7703-01 17 7681676 7681676 C T DNAH2 Silent p.T1810T 0.33 TCGA-BR-7703-01 17 78293215 78293215 G A RNF213 Intron 0.29 TCGA-BR-7703-01 17 78326636 78326636 G A RNF213 Intron 0.26 TCGA-BR-7703-01 17 78445606 78445606 C A NPTX1 Missense_Mutation p.G335C 0.08 deleterious(0.01) probably_damaging(0.928) TCGA-BR-7703-01 17 7907470 7907470 A C GUCY2D Missense_Mutation p.Q341P 0.25 tolerated(0.12) benign(0.202) TCGA-BR-7703-01 17 80014952 80014952 G A GPS1 Silent p.Q511Q 0.33 TCGA-BR-7703-01 17 8053891 8053891 G A PER1 Missense_Mutation p.T45I 0.36 tolerated(0.26) benign(0.219) TCGA-BR-7703-01 17 8170401 8170401 G A PFAS Missense_Mutation p.R1008Q 0.31 deleterious(0.03) probably_damaging(0.957) TCGA-BR-7703-01 17 8633408 8633408 C T CCDC42 3'UTR 0.29 TCGA-BR-7703-01 18 33726216 33726216 C T ELP2 Nonsense_Mutation p.R398* 0.05 TCGA-BR-7703-01 18 34753044 34753044 G A KIAA1328 Missense_Mutation p.R508Q 0.33 deleterious(0.04) benign(0.213) TCGA-BR-7703-01 18 35145354 35145354 G A CELF4 Missense_Mutation p.T84M 0.35 deleterious(0) probably_damaging(1) TCGA-BR-7703-01 18 42531385 42531385 G T SETBP1 Missense_Mutation p.A694S 0.39 tolerated(0.44) benign(0.079) TCGA-BR-7703-01 18 44555126 44555126 A G TCEB3C Missense_Mutation p.L363P 0.02 deleterious(0) probably_damaging(0.998) TCGA-BR-7703-01 18 44561456 44561456 C T TCEB3B Silent p.Q60Q 0.20 TCGA-BR-7703-01 18 54446705 54446705 C A WDR7 Missense_Mutation p.D997E 0.27 tolerated(0.41) probably_damaging(0.996) TCGA-BR-7703-01 18 57013194 57013194 T - LMAN1 Frame_Shift_Del p.E305Rfs*22 0.47 TCGA-BR-7703-01 18 60241471 60241471 G A ZCCHC2 Missense_Mutation p.M719I 0.26 deleterious(0.01) benign(0.031) TCGA-BR-7703-01 18 61654276 61654276 G A SERPINB8 Missense_Mutation p.A297T 0.40 deleterious(0) probably_damaging(0.988) TCGA-BR-7703-01 18 73000281 73000281 C T TSHZ1 Silent p.N928N 0.24 TCGA-BR-7703-01 18 77893766 77893766 G A ADNP2 Missense_Mutation p.C157Y 0.21 deleterious(0) possibly_damaging(0.874) TCGA-BR-7703-01 19 10677827 10677827 G A CDKN2D Silent p.D136D 0.24 TCGA-BR-7703-01 19 1257294 1257294 G A MIDN 3'UTR 0.33 TCGA-BR-7703-01 19 12866954 12866954 G T BEST2 Splice_Site p.X317_splice 0.10 TCGA-BR-7703-01 19 12874211 12874211 C T HOOK2 Missense_Mutation p.R682Q 0.06 deleterious(0.02) possibly_damaging(0.558) TCGA-BR-7703-01 19 1466430 1466430 G A APC2 Missense_Mutation p.A1044T 0.52 benign(0.014) TCGA-BR-7703-01 19 14938705 14938705 C T OR7A5 Missense_Mutation p.V117M 0.06 deleterious_low_confidence(0.03) benign(0.406) TCGA-BR-7703-01 19 1578416 1578416 C A MBD3 Missense_Mutation p.A267S 0.32 tolerated_low_confidence(0.08) probably_damaging(0.964) TCGA-BR-7703-01 19 1615385 1615385 C T TCF3 Missense_Mutation p.R574H 0.24 deleterious(0.05) probably_damaging(1) TCGA-BR-7703-01 19 16593516 16593516 C T CALR3 Silent p.A253A 0.25 TCGA-BR-7703-01 19 18780032 18780032 C - KLHL26 Frame_Shift_Del p.R610Gfs*32 0.22 TCGA-BR-7703-01 19 18888241 18888241 C T CRTC1 3'UTR 0.10 TCGA-BR-7703-01 19 24010328 24010328 T A RPSAP58 Missense_Mutation p.L122H 0.31 deleterious(0) probably_damaging(0.997) TCGA-BR-7703-01 19 2733057 2733057 C T SLC39A3 Missense_Mutation p.V213M 0.41 tolerated(0.14) benign(0.243) TCGA-BR-7703-01 19 2796048 2796048 C T THOP1 Intron 0.20 TCGA-BR-7703-01 19 282161 282161 C T PPAP2C Silent p.L251L 0.11 TCGA-BR-7703-01 19 3013795 3013796 - G TLE2 Frame_Shift_Ins p.S249Qfs*30 0.29 TCGA-BR-7703-01 19 30935847 30935847 A G ZNF536 Missense_Mutation p.M460V 0.37 tolerated(0.12) benign(0) TCGA-BR-7703-01 19 31768896 31768896 G - TSHZ3 Frame_Shift_Del p.M602Cfs*13 0.23 TCGA-BR-7703-01 19 34263386 34263386 C T CHST8 Silent p.S231S 0.36 TCGA-BR-7703-01 19 34832706 34832706 C T KIAA0355 Missense_Mutation p.R623C 0.24 deleterious_low_confidence(0.04) benign(0.401) TCGA-BR-7703-01 19 35831914 35831914 C T CD22 Silent p.G460G 0.45 TCGA-BR-7703-01 19 3589552 3589552 C T GIPC3 Missense_Mutation p.A235V 0.42 tolerated(0.98) benign(0.001) TCGA-BR-7703-01 19 35979569 35979569 G A KRTDAP Nonsense_Mutation p.R55* 0.32 TCGA-BR-7703-01 19 36940763 36940763 T C ZNF566 Missense_Mutation p.N126D 0.03 deleterious(0.04) benign(0.002) TCGA-BR-7703-01 19 37854373 37854373 G A HKR1 Missense_Mutation p.G559D 0.11 deleterious(0.01) probably_damaging(0.922) TCGA-BR-7703-01 19 38876233 38876233 G A GGN Missense_Mutation p.P557S 0.15 tolerated_low_confidence(0.29) benign(0.283) TCGA-BR-7703-01 19 39384074 39384074 C A SIRT2 Missense_Mutation p.R69L 0.18 tolerated(0.05) benign(0.129) TCGA-BR-7703-01 19 39691471 39691471 G T NCCRP1 3'UTR 0.27 TCGA-BR-7703-01 19 39787011 39787011 C T IFNL1 5'UTR 0.32 TCGA-BR-7703-01 19 40540359 40540359 C T ZNF780B Missense_Mutation p.V803I 0.16 deleterious(0.04) benign(0) TCGA-BR-7703-01 19 40762934 40762934 C T AKT2 Missense_Mutation p.R25Q 0.18 deleterious(0) probably_damaging(0.968) TCGA-BR-7703-01 19 40900690 40900690 A G PRX Missense_Mutation p.V1190A 0.05 tolerated(0.13) benign(0.294) TCGA-BR-7703-01 19 41271080 41271080 T C SNRPA 3'UTR 0.34 TCGA-BR-7703-01 19 4292666 4292666 C T TMIGD2 Missense_Mutation p.R260K 0.29 tolerated(0.58) benign(0.008) TCGA-BR-7703-01 19 43579693 43579693 C T PSG2 Silent p.P174P 0.33 TCGA-BR-7703-01 19 44097037 44097037 G A IRGQ Missense_Mutation p.P338L 0.36 tolerated(0.26) probably_damaging(1) TCGA-BR-7703-01 19 4557220 4557220 G A SEMA6B Silent p.R87R 0.30 TCGA-BR-7703-01 19 46313976 46313976 G A RSPH6A Missense_Mutation p.T258M 0.44 tolerated(0.07) benign(0.4) TCGA-BR-7703-01 19 46997563 46997563 C T PNMAL2 Missense_Mutation p.R387H 0.16 deleterious(0) benign(0.235) TCGA-BR-7703-01 19 48646810 48646810 C T LIG1 Missense_Mutation p.V302M 0.29 tolerated(0.08) possibly_damaging(0.811) TCGA-BR-7703-01 19 48919394 48919394 T C GRIN2D Missense_Mutation p.S573P 0.06 tolerated(0.06) benign(0.033) TCGA-BR-7703-01 19 49632105 49632105 C T PPFIA3 Silent p.L115L 0.20 TCGA-BR-7703-01 19 49863251 49863251 C T TEAD2 Missense_Mutation p.G28S 0.38 tolerated(0.49) probably_damaging(0.972) TCGA-BR-7703-01 19 49934335 49934335 G A SLC17A7 Silent p.N442N 0.39 TCGA-BR-7703-01 19 50666287 50666287 G A IZUMO2 Silent p.A55A 0.24 TCGA-BR-7703-01 19 50983973 50983973 C T EMC10 Silent p.L180L 0.30 TCGA-BR-7703-01 19 5111465 5111465 G A KDM4B Intron 0.10 TCGA-BR-7703-01 19 51228606 51228606 C T CLEC11A Missense_Mutation p.P285L 0.21 deleterious(0.03) benign(0.016) TCGA-BR-7703-01 19 51914462 51914462 T A SIGLEC10 Missense_Mutation p.Q662L 0.04 tolerated(0.12) benign(0.104) TCGA-BR-7703-01 19 51994931 51994931 G A SIGLEC12 Silent p.I584I 0.27 TCGA-BR-7703-01 19 52002839 52002839 C T SIGLEC12 Missense_Mutation p.V314M 0.26 tolerated(0.05) possibly_damaging(0.79) TCGA-BR-7703-01 19 53058467 53058467 C T ZNF808 Silent p.N766N 0.36 TCGA-BR-7703-01 19 53384108 53384108 C T ZNF320 Missense_Mutation p.R424H 0.20 tolerated(0.43) benign(0.007) TCGA-BR-7703-01 19 53454224 53454224 C A ZNF816 Missense_Mutation p.Q268H 0.41 tolerated(0.18) benign(0.039) TCGA-BR-7703-01 19 53576541 53576541 T C ZNF160 Intron 0.38 TCGA-BR-7703-01 19 537097 537097 G A CDC34 Silent p.R149R 0.12 TCGA-BR-7703-01 19 54711206 54711206 G A RPS9 Intron 0.33 TCGA-BR-7703-01 19 55147140 55147140 C - LILRB1 Intron 0.21 TCGA-BR-7703-01 19 55285048 55285048 T C KIR2DL1 Missense_Mutation p.S112P 0.04 deleterious(0) probably_damaging(0.998) TCGA-BR-7703-01 19 55607456 55607456 G - PPP1R12C Frame_Shift_Del p.I373Sfs*51 0.24 TCGA-BR-7703-01 19 55658533 55658533 C T TNNT1 5'UTR 0.41 TCGA-BR-7703-01 19 55758396 55758396 C T PPP6R1 Missense_Mutation p.E26K 0.25 deleterious(0) probably_damaging(0.997) TCGA-BR-7703-01 19 56104137 56104137 C G FIZ1 Silent p.A390A 0.40 TCGA-BR-7703-01 19 56303726 56303726 G A NLRP11 Silent p.Y818Y 0.33 TCGA-BR-7703-01 19 56671208 56671208 G A ZNF444 Missense_Mutation p.A208T 0.38 tolerated(0.48) benign(0.04) TCGA-BR-7703-01 19 58511153 58511153 G T ZNF606 Intron 0.10 TCGA-BR-7703-01 19 58596096 58596096 C T ZSCAN18 Missense_Mutation p.V553M 0.30 tolerated_low_confidence(0.33) unknown(0) TCGA-BR-7703-01 19 58867569 58867569 G T ZNF497 Missense_Mutation p.P478H 0.23 deleterious(0.02) benign(0.105) TCGA-BR-7703-01 19 58983065 58983065 C T ZNF324 Silent p.C402C 0.30 TCGA-BR-7703-01 19 6147615 6147615 A - ACSBG2 Frame_Shift_Del p.K77Sfs*5 0.23 TCGA-BR-7703-01 19 6496189 6496189 C T TUBB4A Silent p.T107T 0.18 TCGA-BR-7703-01 19 7987008 7987008 T C SNAPC2 Missense_Mutation p.L154P 0.29 deleterious(0.04) probably_damaging(0.983) TCGA-BR-7703-01 19 8326868 8326868 G A CERS4 Missense_Mutation p.A354T 0.26 tolerated(0.5) benign(0.002) TCGA-BR-7703-01 19 9067365 9067365 G A MUC16 Missense_Mutation p.A6694V 0.27 unknown(0) TCGA-BR-7703-01 1 109745652 109745652 A G KIAA1324 3'UTR 0.07 TCGA-BR-7703-01 1 110031590 110031590 G A ATXN7L2 Missense_Mutation p.R302H 0.07 tolerated(0.23) benign(0.008) TCGA-BR-7703-01 1 110086456 110086456 C - GPR61 Frame_Shift_Del p.Q273Rfs*40 0.27 TCGA-BR-7703-01 1 110559020 110559020 T C AHCYL1 Silent p.N279N 0.06 TCGA-BR-7703-01 1 111959067 111959068 - T OVGP1 Frame_Shift_Ins p.R345Kfs*17 0.22 TCGA-BR-7703-01 1 114280758 114280761 CAAA - PHTF1 Frame_Shift_Del p.V101Gfs*11 0.20 TCGA-BR-7703-01 1 118514590 118514590 A - SPAG17 Frame_Shift_Del p.F2074Lfs*25 0.23 TCGA-BR-7703-01 1 119575742 119575742 C T WARS2 Missense_Mutation p.R292H 0.13 tolerated(0.34) benign(0.007) TCGA-BR-7703-01 1 1222953 1222953 C T SCNN1D Missense_Mutation p.A459V 0.28 tolerated(0.06) possibly_damaging(0.834) TCGA-BR-7703-01 1 144951998 144951998 C T PDE4DIP Intron 0.07 TCGA-BR-7703-01 1 145769447 145769447 G A GPR89A Silent p.I352I 0.26 TCGA-BR-7703-01 1 150053479 150053479 A G VPS45 Missense_Mutation p.D248G 0.25 deleterious(0.01) possibly_damaging(0.672) TCGA-BR-7703-01 1 151110223 151110225 GAA - SEMA6C In_Frame_Del p.F240del 0.19 TCGA-BR-7703-01 1 151680108 151680108 G A CELF3 Missense_Mutation p.A216V 0.47 deleterious(0.02) possibly_damaging(0.889) TCGA-BR-7703-01 1 153658636 153658636 G A NPR1 Missense_Mutation p.R573H 0.18 deleterious(0.03) probably_damaging(1) TCGA-BR-7703-01 1 156142686 156142686 G C SEMA4A Missense_Mutation p.V402L 0.32 deleterious(0.03) probably_damaging(0.98) TCGA-BR-7703-01 1 156339053 156339053 C A RHBG Missense_Mutation p.P5T 0.43 deleterious(0.02) benign(0.242) TCGA-BR-7703-01 1 156779466 156779466 G A SH2D2A Missense_Mutation p.A244V 0.27 tolerated(0.09) benign(0.059) TCGA-BR-7703-01 1 156843535 156843535 G A NTRK1 Missense_Mutation p.V321M 0.19 tolerated(0.1) possibly_damaging(0.567) TCGA-BR-7703-01 1 15753675 15753675 C T EFHD2 Silent p.A162A 0.53 TCGA-BR-7703-01 1 15817771 15817772 - TG CASP9 3'Flank 0.30 TCGA-BR-7703-01 1 158606546 158606546 T G SPTA1 Missense_Mutation p.K1732T 0.36 deleterious(0) probably_damaging(0.998) TCGA-BR-7703-01 1 159275825 159275825 C T FCER1A Missense_Mutation p.P127S 0.23 tolerated(1) benign(0.01) TCGA-BR-7703-01 1 160393967 160393967 G A VANGL2 Missense_Mutation p.R400H 0.24 deleterious(0) possibly_damaging(0.877) TCGA-BR-7703-01 1 160797685 160797685 C T LY9 3'UTR 0.11 TCGA-BR-7703-01 1 161021106 161021106 G - ARHGAP30 Frame_Shift_Del p.P473Qfs*41 0.19 TCGA-BR-7703-01 1 161166627 161166627 G A ADAMTS4 Missense_Mutation p.A226V 0.04 deleterious(0.04) possibly_damaging(0.609) TCGA-BR-7703-01 1 165182925 165182925 G A LMX1A Nonsense_Mutation p.R208* 0.29 TCGA-BR-7703-01 1 168262408 168262408 T C TBX19 Silent p.Y165Y 0.06 TCGA-BR-7703-01 1 17303033 17303033 T C MFAP2 Silent p.G83G 0.22 TCGA-BR-7703-01 1 17609510 17609510 T C PADI3 Missense_Mutation p.V644A 0.18 deleterious(0.03) possibly_damaging(0.734) TCGA-BR-7703-01 1 17657500 17657500 C T PADI4 Silent p.N43N 0.26 TCGA-BR-7703-01 1 180062648 180062648 C T CEP350 Missense_Mutation p.R2470C 0.40 benign(0.035) TCGA-BR-7703-01 1 182354634 182354634 C T GLUL Missense_Mutation p.A221T 0.22 deleterious(0.04) benign(0.087) TCGA-BR-7703-01 1 183909828 183909828 G A COLGALT2 Silent p.T497T 0.27 TCGA-BR-7703-01 1 186957564 186957564 G A PLA2G4A Missense_Mutation p.R725H 0.05 tolerated(0.08) possibly_damaging(0.886) TCGA-BR-7703-01 1 200974695 200974695 C T KIF21B Missense_Mutation p.R192H 0.19 deleterious(0) probably_damaging(0.996) TCGA-BR-7703-01 1 201489468 201489468 G A RPS10P7 RNA 0.28 TCGA-BR-7703-01 1 202710789 202710789 G A KDM5B Missense_Mutation p.T884M 0.23 tolerated(0.18) benign(0) TCGA-BR-7703-01 1 203024614 203024614 G A PPFIA4 Silent p.T122T 0.32 TCGA-BR-7703-01 1 205495220 205495220 C T CDK18 Missense_Mutation p.R192C 0.12 deleterious(0.03) benign(0.085) TCGA-BR-7703-01 1 205768111 205768111 G A SLC41A1 Missense_Mutation p.T224I 0.30 deleterious(0) probably_damaging(0.985) TCGA-BR-7703-01 1 216052348 216052348 A C USH2A Silent p.T2772T 0.29 TCGA-BR-7703-01 1 216172363 216172363 G A USH2A Missense_Mutation p.R2175C 0.39 benign(0.021) TCGA-BR-7703-01 1 218520238 218520238 G A TGFB2 Silent p.P65P 0.34 TCGA-BR-7703-01 1 232568138 232568138 C T SIPA1L2 Missense_Mutation p.V1371M 0.17 tolerated(0.25) possibly_damaging(0.741) TCGA-BR-7703-01 1 233190017 233190017 G A PCNXL2 Nonsense_Mutation p.R1450* 0.31 TCGA-BR-7703-01 1 233802519 233802519 G A KCNK1 Silent p.V178V 0.33 TCGA-BR-7703-01 1 236924372 236924372 G A ACTN2 Missense_Mutation p.V809I 0.17 tolerated(0.23) benign(0.008) TCGA-BR-7703-01 1 237015832 237015832 T C MTR Silent p.P569P 0.20 TCGA-BR-7703-01 1 24078404 24078404 A - TCEB3 Frame_Shift_Del p.N465Mfs*19 0.29 TCGA-BR-7703-01 1 242042466 242042466 C T EXO1 Missense_Mutation p.P644S 0.42 tolerated(0.23) benign(0.022) TCGA-BR-7703-01 1 242253167 242253167 G A PLD5 Missense_Mutation p.R534W 0.30 tolerated_low_confidence(0.19) benign(0.005) TCGA-BR-7703-01 1 243349684 243349684 G A CEP170 Silent p.N383N 0.22 TCGA-BR-7703-01 1 248789600 248789600 A G OR2T11 Missense_Mutation p.I277T 0.08 deleterious(0.02) benign(0.026) TCGA-BR-7703-01 1 26801138 26801138 G A HMGN2 Missense_Mutation p.G73R 0.21 tolerated(0.16) probably_damaging(0.995) TCGA-BR-7703-01 1 27589647 27589647 G A WDTC1 Missense_Mutation p.R18Q 0.32 tolerated(0.47) benign(0.005) TCGA-BR-7703-01 1 28282576 28282576 G A SMPDL3B Missense_Mutation p.A330T 0.19 tolerated(0.59) benign(0.003) TCGA-BR-7703-01 1 28920547 28920547 G - RAB42 Frame_Shift_Del p.G81Vfs*119 0.29 TCGA-BR-7703-01 1 31206723 31206723 C T LAPTM5 Silent p.S247S 0.33 TCGA-BR-7703-01 1 31901827 31901827 C T SERINC2 Silent p.D270D 0.28 TCGA-BR-7703-01 1 34291301 34291301 C T CSMD2 Missense_Mutation p.V330M 0.12 deleterious(0) possibly_damaging(0.866) TCGA-BR-7703-01 1 38186494 38186494 G A EPHA10 Silent p.T723T 0.29 TCGA-BR-7703-01 1 40735792 40735792 T C ZMPSTE24 Missense_Mutation p.V207A 0.07 deleterious(0) benign(0.411) TCGA-BR-7703-01 1 40878733 40878734 - A SMAP2 Frame_Shift_Ins p.L153Ifs*7 0.28 TCGA-BR-7703-01 1 43200768 43200768 G - CLDN19 Frame_Shift_Del p.L222Wfs*66 0.21 TCGA-BR-7703-01 1 45812430 45812432 CAT - TESK2 In_Frame_Del p.D271del 0.24 TCGA-BR-7703-01 1 4715423 4715423 G A AJAP1 5'UTR 0.50 TCGA-BR-7703-01 1 47489498 47489500 CTC - CYP4X1 In_Frame_Del p.S4del 0.25 TCGA-BR-7703-01 1 47534390 47534390 A C CYP4Z1 Missense_Mutation p.S92R 0.07 tolerated(0.34) benign(0.016) TCGA-BR-7703-01 1 47691501 47691501 G A TAL1 Silent p.D20D 0.33 TCGA-BR-7703-01 1 53099298 53099298 G A FAM159A Missense_Mutation p.D45N 0.10 deleterious(0.02) probably_damaging(0.998) TCGA-BR-7703-01 1 54694484 54694484 C T SSBP3 Missense_Mutation p.G315S 0.12 tolerated(0.06) probably_damaging(1) TCGA-BR-7703-01 1 55119781 55119781 C A MROH7 Silent p.I394I 0.32 TCGA-BR-7703-01 1 63068014 63068014 G A ANGPTL3 Silent p.T298T 0.20 TCGA-BR-7703-01 1 65143941 65143941 C T CACHD1 Silent p.F1013F 0.28 TCGA-BR-7703-01 1 66798170 66798170 T C PDE4B Intron 0.16 TCGA-BR-7703-01 1 75606736 75606736 C T LHX8 Missense_Mutation p.H112Y 0.36 tolerated(0.07) possibly_damaging(0.829) TCGA-BR-7703-01 1 7910968 7910968 C T UTS2 Missense_Mutation p.A55T 0.29 tolerated(0.19) benign(0.014) TCGA-BR-7703-01 20 11899210 11899210 C - BTBD3 Frame_Shift_Del p.P97Qfs*16 0.10 TCGA-BR-7703-01 20 20007472 20007472 G A NAA20 Missense_Mutation p.G72R 0.23 deleterious(0) probably_damaging(0.948) TCGA-BR-7703-01 20 23065992 23065992 C - CD93 Frame_Shift_Del p.D280Mfs*19 0.24 TCGA-BR-7703-01 20 23345920 23345920 A G GZF1 Silent p.E300E 0.27 TCGA-BR-7703-01 20 2575544 2575544 G A TMC2 Missense_Mutation p.R336Q 0.07 deleterious(0.01) probably_damaging(0.941) TCGA-BR-7703-01 20 29623176 29623176 G T FRG1B 5'UTR 0.03 TCGA-BR-7703-01 20 3001963 3001963 C T PTPRA Silent p.C350C 0.20 TCGA-BR-7703-01 20 3215425 3215425 A - SLC4A11 Frame_Shift_Del p.F111Lfs*32 0.35 TCGA-BR-7703-01 20 32232360 32232360 G A CBFA2T2 Missense_Mutation p.V575M 0.05 tolerated(0.06) benign(0.009) TCGA-BR-7703-01 20 33868473 33868473 T C EIF6 Missense_Mutation p.H118R 0.11 deleterious(0.01) possibly_damaging(0.907) TCGA-BR-7703-01 20 34067839 34067839 C T CEP250 Missense_Mutation p.R819W 0.29 probably_damaging(1) TCGA-BR-7703-01 20 3557644 3557644 G A ATRN Missense_Mutation p.E785K 0.30 tolerated(0.22) possibly_damaging(0.449) TCGA-BR-7703-01 20 3562942 3562942 G A ATRN Missense_Mutation p.R902Q 0.32 tolerated(0.66) benign(0.002) TCGA-BR-7703-01 20 36024669 36024669 C A SRC Missense_Mutation p.R220S 0.31 deleterious(0.02) probably_damaging(0.995) TCGA-BR-7703-01 20 3675116 3675116 A T SIGLEC1 Missense_Mutation p.L1003H 0.38 deleterious(0.03) benign(0.236) TCGA-BR-7703-01 20 37384640 37384640 G A ACTR5 Silent p.A378A 0.26 TCGA-BR-7703-01 20 39794988 39794988 C T PLCG1 Nonsense_Mutation p.R652* 0.04 TCGA-BR-7703-01 20 40112160 40112160 C A CHD6 Splice_Site p.X753_splice 0.36 TCGA-BR-7703-01 20 43850895 43850895 C T SEMG2 Missense_Mutation p.R208C 0.27 deleterious(0.01) benign(0.083) TCGA-BR-7703-01 20 43926884 43926884 C T MATN4 Missense_Mutation p.R451H 0.08 probably_damaging(0.994) TCGA-BR-7703-01 20 47253137 47253137 G A PREX1 Missense_Mutation p.A1344V 0.32 tolerated(0.05) benign(0.06) TCGA-BR-7703-01 20 47741116 47741116 C A STAU1 Silent p.R206R 0.32 TCGA-BR-7703-01 20 52193262 52193262 C T ZNF217 Missense_Mutation p.D681N 0.26 tolerated(0.12) benign(0.048) TCGA-BR-7703-01 20 55206438 55206438 T C TFAP2C Missense_Mutation p.Y76H 0.11 tolerated(0.1) possibly_damaging(0.564) TCGA-BR-7703-01 20 60913608 60913608 C T LAMA5 Missense_Mutation p.V512M 0.30 probably_damaging(0.954) TCGA-BR-7703-01 20 61143484 61143484 G A C20orf166 5'Flank 0.38 TCGA-BR-7703-01 20 61511207 61511207 G - DIDO1 Frame_Shift_Del p.P2034Rfs*240 0.26 TCGA-BR-7703-01 20 62500698 62500698 G A TPD52L2 Silent p.T23T 0.27 TCGA-BR-7703-01 20 62848507 62848507 G A MYT1 Silent p.L573L 0.38 TCGA-BR-7703-01 20 7864203 7864203 A - HAO1 3'UTR 0.30 TCGA-BR-7703-01 20 8639224 8639224 G T PLCB1 Missense_Mutation p.M245I 0.25 deleterious(0.01) benign(0.063) TCGA-BR-7703-01 21 11039011 11039011 T C BAGE2 RNA 0.06 TCGA-BR-7703-01 21 11049460 11049460 G A BAGE2 RNA 0.04 TCGA-BR-7703-01 21 15882784 15882784 T C SAMSN1 Splice_Site p.X205_splice 0.25 TCGA-BR-7703-01 21 27137089 27137089 G A GABPA Missense_Mutation p.R376H 0.33 deleterious(0) possibly_damaging(0.545) TCGA-BR-7703-01 21 30325581 30325581 A G LTN1 Missense_Mutation p.V1112A 0.28 tolerated(0.76) benign(0.001) TCGA-BR-7703-01 21 40587277 40587277 G A BRWD1 Missense_Mutation p.A1224V 0.08 deleterious(0) probably_damaging(0.975) TCGA-BR-7703-01 21 44450226 44450226 G A PKNOX1 3'UTR 0.32 TCGA-BR-7703-01 21 44488617 44488617 A G CBS Splice_Site p.X106_splice 0.34 TCGA-BR-7703-01 21 45657063 45657063 G A ICOSLG Silent p.S31S 0.32 TCGA-BR-7703-01 21 47987520 47987520 C T DIP2A Silent p.V1567V 0.22 TCGA-BR-7703-01 22 18846040 18846040 T C BCRP7 RNA 0.13 TCGA-BR-7703-01 22 20783851 20783851 C T SCARF2 Missense_Mutation p.A466T 0.29 tolerated(0.39) benign(0.105) TCGA-BR-7703-01 22 22035655 22035655 G A PPIL2 Silent p.T121T 0.32 TCGA-BR-7703-01 22 23437850 23437850 G A GNAZ 5'UTR 0.15 TCGA-BR-7703-01 22 24563190 24563190 A G CABIN1 Missense_Mutation p.Y1864C 0.19 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BR-7703-01 22 26743798 26743798 G A SEZ6L Missense_Mutation p.G776S 0.31 deleterious(0) probably_damaging(1) TCGA-BR-7703-01 22 29534746 29534746 A G KREMEN1 Missense_Mutation p.S367G 0.08 tolerated_low_confidence(0.38) benign(0.012) TCGA-BR-7703-01 22 29940500 29940500 C A THOC5 Missense_Mutation p.Q63H 0.37 deleterious(0.04) benign(0.162) TCGA-BR-7703-01 22 32546324 32546324 G A C22orf42 Silent p.D212D 0.29 TCGA-BR-7703-01 22 36684413 36684413 G A MYH9 Missense_Mutation p.S1606L 0.29 benign(0.164) TCGA-BR-7703-01 22 36693034 36693034 G A MYH9 Nonsense_Mutation p.R1043* 0.40 TCGA-BR-7703-01 22 37332596 37332596 G T CSF2RB Silent p.G490G 0.29 TCGA-BR-7703-01 22 37524250 37524250 G T IL2RB Silent p.S514S 0.18 TCGA-BR-7703-01 22 39222674 39222674 C T NPTXR Missense_Mutation p.R310Q 0.34 deleterious(0.01) possibly_damaging(0.848) TCGA-BR-7703-01 22 39621798 39621798 G T PDGFB Missense_Mutation p.P219H 0.50 tolerated(0.14) possibly_damaging(0.905) TCGA-BR-7703-01 22 39631827 39631827 C T PDGFB Missense_Mutation p.R39H 0.23 deleterious(0.03) probably_damaging(1) TCGA-BR-7703-01 22 40140075 40140075 A G ENTHD1 Missense_Mutation p.V478A 0.07 tolerated(1) benign(0.004) TCGA-BR-7703-01 22 43442449 43442449 G A TTLL1 Missense_Mutation p.P370L 0.08 deleterious(0.02) benign(0.078) TCGA-BR-7703-01 22 43563208 43563208 C T TTLL12 3'UTR 0.28 TCGA-BR-7703-01 22 45127647 45127649 CTT - PRR5 In_Frame_Del p.F146del 0.33 TCGA-BR-7703-01 22 45595911 45595911 G T KIAA0930 Silent p.T291T 0.09 TCGA-BR-7703-01 22 46657156 46657156 C A PKDREJ Silent p.V688V 0.14 TCGA-BR-7703-01 22 46760632 46760632 C T CELSR1 Silent p.G2852G 0.14 TCGA-BR-7703-01 22 47022707 47022707 G T GRAMD4 Missense_Mutation p.R4M 0.05 deleterious_low_confidence(0) possibly_damaging(0.757) TCGA-BR-7703-01 22 50660233 50660233 G A TUBGCP6 Missense_Mutation p.S852L 0.35 tolerated(0.32) benign(0.002) TCGA-BR-7703-01 2 10267250 10267251 TT - RRM2 Frame_Shift_Del p.F295Lfs*24 0.23 TCGA-BR-7703-01 2 103149045 103149045 G T SLC9A4 Missense_Mutation p.E765D 0.35 tolerated(0.05) benign(0.002) TCGA-BR-7703-01 2 109276116 109276116 G T LIMS1 Missense_Mutation p.A80S 0.09 tolerated(0.4) benign(0.04) TCGA-BR-7703-01 2 113082135 113082135 C A ZC3H6 Missense_Mutation p.Q583K 0.29 tolerated(0.08) benign(0.159) TCGA-BR-7703-01 2 116497367 116497367 A G DPP10 Silent p.R254R 0.27 TCGA-BR-7703-01 2 128083333 128083333 A G MAP3K2 Silent p.S216S 0.08 TCGA-BR-7703-01 2 128628889 128628889 C T AMMECR1L Missense_Mutation p.R151H 0.26 deleterious(0) probably_damaging(1) TCGA-BR-7703-01 2 128767857 128767859 AGT - SAP130 In_Frame_Del p.T311del 0.41 TCGA-BR-7703-01 2 141032034 141032034 C - LRP1B Frame_Shift_Del p.H4368Tfs*4 0.21 TCGA-BR-7703-01 2 148680608 148680608 T - ACVR2A Frame_Shift_Del p.L383* 0.25 TCGA-BR-7703-01 2 152331608 152331608 T - RIF1 3'UTR 0.21 TCGA-BR-7703-01 2 168101959 168101960 - T XIRP2 Frame_Shift_Ins p.E1355* 0.14 TCGA-BR-7703-01 2 175986257 175986257 G A ATF2 Silent p.N38N 0.24 TCGA-BR-7703-01 2 176958155 176958155 G A HOXD13 Silent p.P179P 0.44 TCGA-BR-7703-01 2 17698848 17698848 C T RAD51AP2 Missense_Mutation p.A279T 0.30 tolerated(0.12) possibly_damaging(0.574) TCGA-BR-7703-01 2 177016381 177016381 T C HOXD4 Missense_Mutation p.M7T 0.23 deleterious(0) benign(0.22) TCGA-BR-7703-01 2 17913083 17913084 AC - SMC6 Frame_Shift_Del p.Y136Wfs*2 0.22 TCGA-BR-7703-01 2 179416766 179416766 A T TTN Silent p.P30287P 0.07 TCGA-BR-7703-01 2 179439492 179439492 G A TTN Silent p.T23789T 0.32 TCGA-BR-7703-01 2 179481660 179481660 T G TTN Missense_Mutation p.S15986R 0.30 TCGA-BR-7703-01 2 18112530 18112530 G - KCNS3 Frame_Shift_Del p.K87Sfs*54 0.20 TCGA-BR-7703-01 2 189899775 189899775 T - COL5A2 Frame_Shift_Del p.N1407Tfs*3 0.20 TCGA-BR-7703-01 2 190531174 190531174 T C ASNSD1 Missense_Mutation p.S106P 0.14 deleterious(0.02) possibly_damaging(0.673) TCGA-BR-7703-01 2 196759791 196759791 C T DNAH7 Missense_Mutation p.R1602H 0.21 deleterious(0) probably_damaging(1) TCGA-BR-7703-01 2 1983518 1983518 C T MYT1L Missense_Mutation p.R11H 0.17 deleterious(0) unknown(0) TCGA-BR-7703-01 2 202436664 202436664 G A ALS2CR11 Missense_Mutation p.T278I 0.34 deleterious(0.04) benign(0.046) TCGA-BR-7703-01 2 203420130 203420130 A - BMPR2 Frame_Shift_Del p.N583Tfs*44 0.19 TCGA-BR-7703-01 2 212615400 212615400 G A ERBB4 Missense_Mutation p.R196C 0.30 tolerated(0.17) probably_damaging(0.971) TCGA-BR-7703-01 2 220430066 220430066 G A OBSL1 Missense_Mutation p.R769C 0.30 tolerated(0.19) benign(0.009) TCGA-BR-7703-01 2 220434995 220434995 G A OBSL1 Silent p.A320A 0.40 TCGA-BR-7703-01 2 233409277 233409277 G A CHRNG Silent p.A412A 0.36 TCGA-BR-7703-01 2 234669110 234669110 C T UGT1A8 Intron 0.34 TCGA-BR-7703-01 2 237075034 237075034 G A GBX2 Silent p.D190D 0.37 TCGA-BR-7703-01 2 238274488 238274488 C T COL6A3 Silent p.P1897P 0.23 TCGA-BR-7703-01 2 24240221 24240221 G A MFSD2B Silent p.S179S 0.33 TCGA-BR-7703-01 2 24247037 24247037 C T MFSD2B Silent p.G462G 0.28 TCGA-BR-7703-01 2 27423328 27423328 G A SLC5A6 Silent p.C628C 0.40 TCGA-BR-7703-01 2 29462672 29462672 G A ALK Silent p.G743G 0.29 TCGA-BR-7703-01 2 37208634 37208635 - A HEATR5B Frame_Shift_Ins p.*2072L 0.23 TCGA-BR-7703-01 2 39552896 39552897 - T MAP4K3 Frame_Shift_Ins p.R261Kfs*5 0.20 TCGA-BR-7703-01 2 47256440 47256440 A G TTC7A Silent p.A573A 0.20 TCGA-BR-7703-01 2 54858256 54858256 C T SPTBN1 Silent p.S1024S 0.37 TCGA-BR-7703-01 2 61575984 61575984 G A USP34 Silent p.S527S 0.13 TCGA-BR-7703-01 2 70905913 70905913 T C ADD2 Missense_Mutation p.T436A 0.05 tolerated(0.12) benign(0.407) TCGA-BR-7703-01 2 73456645 73456645 G A PRADC1 Silent p.C74C 0.05 TCGA-BR-7703-01 2 73492583 73492583 C T FBXO41 Missense_Mutation p.R464H 0.36 tolerated(0.13) possibly_damaging(0.46) TCGA-BR-7703-01 2 73679208 73679208 C A ALMS1 Missense_Mutation p.P1851T 0.18 benign(0.103) TCGA-BR-7703-01 2 74597749 74597749 C T DCTN1 Silent p.K349K 0.25 TCGA-BR-7703-01 2 77746782 77746782 G A LRRTM4 Silent p.N71N 0.32 TCGA-BR-7703-01 2 89417308 89417308 T C IGKV1-17 Translation_Start_Site p.M1? 0.15 tolerated_low_confidence(0.07) benign(0.112) TCGA-BR-7703-01 2 89953071 89953071 G C IGKV1D-33 Missense_Mutation p.D23H 0.16 deleterious(0) probably_damaging(0.953) TCGA-BR-7703-01 2 98354293 98354293 G A ZAP70 Missense_Mutation p.R519H 0.22 deleterious(0) probably_damaging(0.971) TCGA-BR-7703-01 3 110831167 110831167 G A PVRL3 Missense_Mutation p.V151I 0.19 deleterious(0.03) possibly_damaging(0.63) TCGA-BR-7703-01 3 114057850 114057850 A G ZBTB20 3'UTR 0.09 TCGA-BR-7703-01 3 114058003 114058003 G - ZBTB20 Frame_Shift_Del p.P692Lfs*43 0.24 TCGA-BR-7703-01 3 121207489 121207489 A - POLQ Frame_Shift_Del p.L1430* 0.20 TCGA-BR-7703-01 3 121350739 121350739 C T HCLS1 Missense_Mutation p.G472D 0.30 deleterious(0) probably_damaging(0.982) TCGA-BR-7703-01 3 121712444 121712444 C - ILDR1 Frame_Shift_Del p.P385Qfs*24 0.19 TCGA-BR-7703-01 3 122002860 122002860 A G CASR Missense_Mutation p.S697G 0.06 tolerated(0.06) possibly_damaging(0.524) TCGA-BR-7703-01 3 122284875 122284875 T C DTX3L Silent p.H119H 0.06 TCGA-BR-7703-01 3 12977232 12977232 G - IQSEC1 Frame_Shift_Del p.R443Gfs*90 0.19 TCGA-BR-7703-01 3 133878114 133878114 C T RYK Missense_Mutation p.R561Q 0.27 deleterious(0) possibly_damaging(0.704) TCGA-BR-7703-01 3 13438890 13438890 G - NUP210 Frame_Shift_Del p.L135Wfs*3 0.24 TCGA-BR-7703-01 3 135870433 135870433 T - MSL2 Frame_Shift_Del p.D431Tfs*4 0.20 TCGA-BR-7703-01 3 136664679 136664679 A G NCK1 Missense_Mutation p.T161A 0.04 tolerated(0.71) benign(0.065) TCGA-BR-7703-01 3 138340266 138340266 A - FAIM Frame_Shift_Del p.M35* 0.25 TCGA-BR-7703-01 3 149459487 149459487 T C COMMD2 Missense_Mutation p.R141G 0.28 tolerated(0.08) possibly_damaging(0.599) TCGA-BR-7703-01 3 152554180 152554180 C T P2RY1 Silent p.Y203Y 0.19 TCGA-BR-7703-01 3 16217061 16217062 - G GALNT15 Frame_Shift_Ins p.A137Gfs*2 0.29 TCGA-BR-7703-01 3 164906366 164906366 G A SLITRK3 Silent p.C751C 0.20 TCGA-BR-7703-01 3 165548346 165548346 T G BCHE Missense_Mutation p.K159T 0.43 deleterious(0) possibly_damaging(0.602) TCGA-BR-7703-01 3 169497261 169497261 T C MYNN Silent p.H324H 0.53 TCGA-BR-7703-01 3 171330108 171330108 G A PLD1 Missense_Mutation p.A948V 0.47 tolerated(0.1) probably_damaging(0.998) TCGA-BR-7703-01 3 179305773 179305773 A C ACTL6A Missense_Mutation p.Q422P 0.21 tolerated(0.14) benign(0.008) TCGA-BR-7703-01 3 183273234 183273234 C T KLHL6 Missense_Mutation p.A70T 0.40 tolerated(0.93) benign(0.207) TCGA-BR-7703-01 3 18391065 18391065 G A SATB1 Missense_Mutation p.T662M 0.30 tolerated(0.1) possibly_damaging(0.736) TCGA-BR-7703-01 3 186502615 186502615 C T EIF4A2 Intron 0.32 TCGA-BR-7703-01 3 188242523 188242523 G A LPP Missense_Mutation p.S126N 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-BR-7703-01 3 191097971 191097971 G T CCDC50 Nonsense_Mutation p.E334* 0.26 TCGA-BR-7703-01 3 19389429 19389429 C T KCNH8 Silent p.D261D 0.29 TCGA-BR-7703-01 3 19554720 19554720 G T KCNH8 Nonsense_Mutation p.E780* 0.35 TCGA-BR-7703-01 3 38045884 38045884 G A VILL Nonsense_Mutation p.W648* 0.22 TCGA-BR-7703-01 3 38591857 38591857 G A SCN5A Silent p.A2002A 0.26 TCGA-BR-7703-01 3 39145036 39145038 CTC - GORASP1 In_Frame_Del p.E24del 0.38 TCGA-BR-7703-01 3 42674107 42674107 A G NKTR Missense_Mutation p.R189G 0.25 deleterious_low_confidence(0.03) unknown(0) TCGA-BR-7703-01 3 45153659 45153659 C A CDCP1 Nonsense_Mutation p.G191* 0.05 TCGA-BR-7703-01 3 45637136 45637136 C T LIMD1 Silent p.S255S 0.19 TCGA-BR-7703-01 3 45877148 45877148 T C LZTFL1 Missense_Mutation p.Q86R 0.04 deleterious(0) probably_damaging(0.987) TCGA-BR-7703-01 3 46497878 46497878 G A LTF Missense_Mutation p.A73V 0.22 deleterious(0.02) probably_damaging(0.997) TCGA-BR-7703-01 3 47277592 47277592 G A KIF9 Nonsense_Mutation p.Q717* 0.33 TCGA-BR-7703-01 3 4816936 4816936 G A ITPR1 Missense_Mutation p.R1982H 0.07 deleterious(0) probably_damaging(1) TCGA-BR-7703-01 3 48310025 48310025 G T ZNF589 Missense_Mutation p.G282W 0.20 deleterious(0) probably_damaging(0.997) TCGA-BR-7703-01 3 48964913 48964913 C T ARIH2 5'UTR 0.19 TCGA-BR-7703-01 3 50683579 50683579 G A MAPKAPK3 Missense_Mutation p.G238D 0.03 deleterious(0) probably_damaging(1) TCGA-BR-7703-01 3 52257585 52257585 G A TLR9 Silent p.L403L 0.40 TCGA-BR-7703-01 3 52523363 52523363 G A NISCH Missense_Mutation p.R1042H 0.29 tolerated(0.14) benign(0) TCGA-BR-7703-01 3 52730572 52730572 C - GLT8D1 Frame_Shift_Del p.E145Nfs*3 0.25 TCGA-BR-7703-01 3 52847385 52847385 G A ITIH4 3'UTR 0.27 TCGA-BR-7703-01 3 53766961 53766961 G A CACNA1D Missense_Mutation p.A885T 0.08 deleterious(0) possibly_damaging(0.854) TCGA-BR-7703-01 3 56651334 56651334 C T CCDC66 Nonsense_Mutation p.Q680* 0.36 TCGA-BR-7703-01 3 57233960 57233960 G A HESX1 5'UTR 0.20 TCGA-BR-7703-01 3 58121816 58121816 C T FLNB Silent p.Y1625Y 0.28 TCGA-BR-7703-01 3 74418379 74418379 G A CNTN3 Nonsense_Mutation p.R303* 0.33 TCGA-BR-7703-01 3 87276641 87276641 C T CHMP2B 5'UTR 0.12 TCGA-BR-7703-01 3 9426229 9426229 G A THUMPD3 Missense_Mutation p.V461I 0.32 tolerated(0.49) benign(0.009) TCGA-BR-7703-01 3 97806015 97806015 G A OR5AC2 5'Flank 0.04 TCGA-BR-7703-01 3 98188635 98188635 G T OR5K1 Missense_Mutation p.C72F 0.25 deleterious(0.04) benign(0.106) TCGA-BR-7703-01 4 105412446 105412446 G A CXXC4 Missense_Mutation p.H172Y 0.34 deleterious_low_confidence(0.02) benign(0.118) TCGA-BR-7703-01 4 110223177 110223177 G A COL25A1 5'UTR 0.44 TCGA-BR-7703-01 4 126370366 126370366 A G FAT4 Missense_Mutation p.D2732G 0.30 probably_damaging(0.999) TCGA-BR-7703-01 4 126412392 126412392 C A FAT4 Silent p.I4805I 0.30 TCGA-BR-7703-01 4 134071731 134071731 G A PCDH10 Missense_Mutation p.A146T 0.33 deleterious(0) probably_damaging(0.996) TCGA-BR-7703-01 4 144135592 144135593 - A USP38 Frame_Shift_Ins p.L824Ifs*7 0.21 TCGA-BR-7703-01 4 144359520 144359520 G A GAB1 Missense_Mutation p.R321Q 0.18 deleterious(0) probably_damaging(0.995) TCGA-BR-7703-01 4 15067858 15067858 T - CPEB2 Frame_Shift_Del p.C989Vfs*31 0.22 TCGA-BR-7703-01 4 15569074 15569074 C A CC2D2A Missense_Mutation p.P1086Q 0.27 deleterious(0.04) benign(0.055) TCGA-BR-7703-01 4 164272323 164272323 C A NPY5R Missense_Mutation p.P300T 0.25 tolerated(0.26) benign(0.038) TCGA-BR-7703-01 4 164272327 164272327 A G NPY5R Missense_Mutation p.E301G 0.25 tolerated(0.4) benign(0) TCGA-BR-7703-01 4 164394544 164394544 G - TKTL2 Frame_Shift_Del p.R115Dfs*12 0.23 TCGA-BR-7703-01 4 170057513 170057513 G A SH3RF1 Missense_Mutation p.R342W 0.03 deleterious(0) probably_damaging(0.998) TCGA-BR-7703-01 4 186559238 186559238 G A SORBS2 Intron 0.08 TCGA-BR-7703-01 4 22389604 22389605 TC - GPR125 Frame_Shift_Del p.R1230Tfs*14 0.23 TCGA-BR-7703-01 4 3230455 3230455 G A HTT Silent p.T2654T 0.18 TCGA-BR-7703-01 4 5733298 5733298 C T EVC Silent p.S177S 0.33 TCGA-BR-7703-01 4 57871589 57871589 A - POLR2B Frame_Shift_Del p.A362Pfs*21 0.24 TCGA-BR-7703-01 4 66189927 66189927 G A EPHA5 Missense_Mutation p.R1007W 0.31 deleterious(0) possibly_damaging(0.765) TCGA-BR-7703-01 4 728799 728799 C - PCGF3 Frame_Shift_Del p.L65Cfs*26 0.23 TCGA-BR-7703-01 4 73012934 73012934 T G NPFFR2 Missense_Mutation p.L325R 0.33 deleterious(0) probably_damaging(1) TCGA-BR-7703-01 4 76731599 76731599 G T USO1 Missense_Mutation p.E839D 0.29 tolerated(0.56) benign(0.001) TCGA-BR-7703-01 4 76842262 76842262 C T NAAA Silent p.S227S 0.35 TCGA-BR-7703-01 4 79328882 79328882 G A FRAS1 Missense_Mutation p.D1399N 0.32 benign(0.218) TCGA-BR-7703-01 4 83347709 83347709 C A HNRNPDL Missense_Mutation p.G367C 0.13 deleterious(0.03) probably_damaging(0.999) TCGA-BR-7703-01 4 8603164 8603164 T C CPZ Missense_Mutation p.C146R 0.44 deleterious(0) probably_damaging(0.999) TCGA-BR-7703-01 4 86915861 86915861 A G ARHGAP24 Missense_Mutation p.K352E 0.19 tolerated(0.43) benign(0.008) TCGA-BR-7703-01 4 89052270 89052271 - T ABCG2 Frame_Shift_Ins p.N158Kfs*5 0.18 TCGA-BR-7703-01 4 9783746 9783746 G A DRD5 Silent p.A31A 0.38 TCGA-BR-7703-01 5 100147820 100147820 T C ST8SIA4 Missense_Mutation p.N271D 0.24 benign(0.077) TCGA-BR-7703-01 5 110409104 110409104 G A TSLP Intron 0.24 TCGA-BR-7703-01 5 110809009 110809009 C T CAMK4 Missense_Mutation p.A209V 0.13 deleterious(0) probably_damaging(1) TCGA-BR-7703-01 5 112162834 112162834 C T APC Nonsense_Mutation p.Q480* 0.33 TCGA-BR-7703-01 5 112164566 112164566 T - APC Frame_Shift_Del p.L548* 0.15 TCGA-BR-7703-01 5 114588851 114588851 A G PGGT1B Missense_Mutation p.V81A 0.05 deleterious(0) possibly_damaging(0.697) TCGA-BR-7703-01 5 128984551 128984551 T A ADAMTS19 Missense_Mutation p.N682K 0.29 tolerated(0.1) benign(0.261) TCGA-BR-7703-01 5 129243994 129243994 G A CHSY3 Missense_Mutation p.V343M 0.19 deleterious(0) probably_damaging(1) TCGA-BR-7703-01 5 134785283 134785283 A G TIFAB Missense_Mutation p.V116A 0.33 tolerated(0.18) benign(0.039) TCGA-BR-7703-01 5 13701426 13701426 A - DNAH5 Frame_Shift_Del p.F4486Lfs*7 0.22 TCGA-BR-7703-01 5 13829793 13829793 C T DNAH5 Silent p.R2090R 0.22 TCGA-BR-7703-01 5 140237829 140237829 G A PCDHA10 Silent p.P732P 0.38 TCGA-BR-7703-01 5 140503167 140503167 C T PCDHB4 Silent p.R529R 0.28 TCGA-BR-7703-01 5 140559327 140559327 C T PCDHB8 Missense_Mutation p.A571V 0.12 tolerated_low_confidence(0.05) benign(0.087) TCGA-BR-7703-01 5 140799030 140799030 G A PCDHGB7 Missense_Mutation p.R535H 0.31 tolerated(0.07) probably_damaging(0.969) TCGA-BR-7703-01 5 141243291 141243291 C T PCDH1 Missense_Mutation p.A869T 0.32 deleterious(0.03) benign(0.172) TCGA-BR-7703-01 5 14401083 14401083 G T TRIO Missense_Mutation p.L1542F 0.06 probably_damaging(0.999) TCGA-BR-7703-01 5 14485239 14485239 C T TRIO Missense_Mutation p.S2240L 0.30 possibly_damaging(0.578) TCGA-BR-7703-01 5 14504593 14504593 G A TRIO Missense_Mutation p.D2835N 0.25 unknown(0) TCGA-BR-7703-01 5 145878172 145878172 C A TCERG1 Silent p.R769R 0.09 TCGA-BR-7703-01 5 145895064 145895064 G A GPR151 Missense_Mutation p.L205F 0.30 tolerated(0.07) possibly_damaging(0.889) TCGA-BR-7703-01 5 145969461 145969461 G T PPP2R2B 3'UTR 0.35 TCGA-BR-7703-01 5 149274815 149274815 G A PDE6A Silent p.Y553Y 0.35 TCGA-BR-7703-01 5 1501615 1501615 G A LPCAT1 Missense_Mutation p.A80V 0.37 deleterious(0.03) benign(0.01) TCGA-BR-7703-01 5 150892047 150892047 C T FAT2 Missense_Mutation p.A3862T 0.34 benign(0.003) TCGA-BR-7703-01 5 150948063 150948063 G T FAT2 Missense_Mutation p.L144M 0.31 probably_damaging(0.999) TCGA-BR-7703-01 5 162945228 162945228 A G MAT2B Silent p.Q288Q 0.30 TCGA-BR-7703-01 5 167673928 167673928 C T TENM2 Missense_Mutation p.S1995L 0.21 deleterious(0) possibly_damaging(0.803) TCGA-BR-7703-01 5 167937620 167937620 C T RARS Missense_Mutation p.R461C 0.08 deleterious(0) probably_damaging(0.996) TCGA-BR-7703-01 5 169267846 169267846 A G DOCK2 Missense_Mutation p.H930R 0.21 tolerated(0.18) benign(0.002) TCGA-BR-7703-01 5 176861093 176861093 G A GRK6 Missense_Mutation p.R306H 0.32 tolerated(0.05) benign(0.08) TCGA-BR-7703-01 5 180048836 180048836 G T FLT4 Missense_Mutation p.L576M 0.23 deleterious(0.02) possibly_damaging(0.901) TCGA-BR-7703-01 5 180056346 180056346 C T FLT4 Missense_Mutation p.V300I 0.30 deleterious(0.02) benign(0.29) TCGA-BR-7703-01 5 180630566 180630566 C A TRIM7 Missense_Mutation p.K199N 0.40 deleterious(0) benign(0.013) TCGA-BR-7703-01 5 32403482 32403482 T - ZFR Frame_Shift_Del p.K415Nfs*42 0.08 TCGA-BR-7703-01 5 33881400 33881401 - A ADAMTS12 Frame_Shift_Ins p.N105* 0.22 TCGA-BR-7703-01 5 33937043 33937043 G A RXFP3 Silent p.P66P 0.31 TCGA-BR-7703-01 5 3600194 3600194 G A IRX1 Missense_Mutation p.A378T 0.50 deleterious(0.01) benign(0.183) TCGA-BR-7703-01 5 39377057 39377057 A G DAB2 Missense_Mutation p.M611T 0.28 tolerated(0.27) benign(0.002) TCGA-BR-7703-01 5 433983 433983 G A AHRR Silent p.E398E 0.40 TCGA-BR-7703-01 5 63257457 63257457 G A HTR1A Silent p.D30D 0.35 TCGA-BR-7703-01 5 72857049 72857049 A G ANKRA2 Silent p.S118S 0.39 TCGA-BR-7703-01 5 78693429 78693429 G T HOMER1 Missense_Mutation p.A239E 0.23 tolerated(1) benign(0.118) TCGA-BR-7703-01 5 82835533 82835533 G A VCAN Silent p.P2237P 0.32 TCGA-BR-7703-01 5 86695286 86695286 C T CCNH Missense_Mutation p.R266K 0.27 tolerated(1) benign(0) TCGA-BR-7703-01 6 107391602 107391602 C - BEND3 Frame_Shift_Del p.D265Tfs*54 0.08 TCGA-BR-7703-01 6 107955431 107955431 C - SOBP Frame_Shift_Del p.P463Rfs*31 0.36 TCGA-BR-7703-01 6 125619888 125619888 G T HDDC2 Missense_Mutation p.P94H 0.31 deleterious(0.01) probably_damaging(0.95) TCGA-BR-7703-01 6 130762378 130762378 G A TMEM200A Missense_Mutation p.G271S 0.28 tolerated(0.79) benign(0.001) TCGA-BR-7703-01 6 132643931 132643931 T C MOXD1 Missense_Mutation p.R398G 0.28 deleterious(0.01) possibly_damaging(0.497) TCGA-BR-7703-01 6 143093193 143093193 C T HIVEP2 Missense_Mutation p.E895K 0.28 deleterious(0) probably_damaging(0.994) TCGA-BR-7703-01 6 144780470 144780470 G A UTRN Missense_Mutation p.R896H 0.25 tolerated(0.17) benign(0.001) TCGA-BR-7703-01 6 151766726 151766726 T - RMND1 Frame_Shift_Del p.K74Sfs*10 0.09 TCGA-BR-7703-01 6 152476161 152476161 G A SYNE1 Nonsense_Mutation p.R7999* 0.21 TCGA-BR-7703-01 6 160908436 160908436 G T LPAL2 RNA 0.07 TCGA-BR-7703-01 6 161032694 161032694 G A LPA Nonsense_Mutation p.R835* 0.07 TCGA-BR-7703-01 6 168461723 168461723 G A FRMD1 Missense_Mutation p.R354W 0.42 deleterious(0) probably_damaging(0.96) TCGA-BR-7703-01 6 24418358 24418358 C T MRS2 Silent p.L295L 0.27 TCGA-BR-7703-01 6 26104418 26104419 TG - HIST1H4C Frame_Shift_Del p.V82Hfs*? 0.19 TCGA-BR-7703-01 6 26638628 26638628 A C ZNF322 Missense_Mutation p.F52V 0.24 deleterious(0) benign(0.038) TCGA-BR-7703-01 6 27835239 27835241 CTT - HIST1H1B In_Frame_Del p.K23del 0.37 TCGA-BR-7703-01 6 29141713 29141713 C A OR2J2 Missense_Mutation p.Q101K 0.32 deleterious(0) probably_damaging(0.999) TCGA-BR-7703-01 6 29976077 29976077 G A ZNRD1-AS1 Intron 0.08 TCGA-BR-7703-01 6 30587710 30587712 GTT - MRPS18B In_Frame_Del p.V101del 0.23 TCGA-BR-7703-01 6 30647115 30647115 A G PPP1R18 Missense_Mutation p.S555P 0.06 tolerated(0.09) probably_damaging(0.999) TCGA-BR-7703-01 6 30672422 30672422 C T MDC1 Missense_Mutation p.R1513Q 0.29 tolerated(0.7) benign(0.015) TCGA-BR-7703-01 6 31807422 31807422 A - C6orf48 Frame_Shift_Del p.M72Cfs*10 0.09 TCGA-BR-7703-01 6 31857080 31857080 G A EHMT2 Nonsense_Mutation p.R347* 0.24 TCGA-BR-7703-01 6 31931727 31931727 G A SKIV2L Missense_Mutation p.R562H 0.27 deleterious(0.03) possibly_damaging(0.673) TCGA-BR-7703-01 6 31997400 31997400 C T C4B Missense_Mutation p.P1245L 0.20 tolerated_low_confidence(0.58) benign(0.004) TCGA-BR-7703-01 6 32036744 32036744 G A TNXB Silent p.D1919D 0.32 TCGA-BR-7703-01 6 32903313 32903313 T C HLA-DMB Missense_Mutation p.S247G 0.31 tolerated(1) benign(0.012) TCGA-BR-7703-01 6 33281220 33281220 C G TAPBP Silent p.R81R 0.25 TCGA-BR-7703-01 6 34101144 34101144 G A GRM4 Missense_Mutation p.R44C 0.07 deleterious(0.01) probably_damaging(0.997) TCGA-BR-7703-01 6 36465583 36465583 A - STK38 Frame_Shift_Del p.F382Lfs*70 0.25 TCGA-BR-7703-01 6 36946316 36946316 C T MTCH1 Missense_Mutation p.A160T 0.26 tolerated(0.49) benign(0.018) TCGA-BR-7703-01 6 39881119 39881119 C T MOCS1 Silent p.A233A 0.28 TCGA-BR-7703-01 6 4056600 4056600 G A PRPF4B Missense_Mutation p.A838T 0.32 deleterious(0.01) unknown(0) TCGA-BR-7703-01 6 41243898 41243898 G T TREM1 Missense_Mutation p.L224M 0.23 deleterious(0.03) probably_damaging(0.999) TCGA-BR-7703-01 6 41309825 41309825 G A NCR2 Silent p.V194V 0.30 TCGA-BR-7703-01 6 46607365 46607365 T A CYP39A1 Missense_Mutation p.K118N 0.30 tolerated(0.3) benign(0.117) TCGA-BR-7703-01 6 5369396 5369396 G A FARS2 Missense_Mutation p.R198Q 0.29 deleterious(0.01) probably_damaging(0.994) TCGA-BR-7703-01 6 71546674 71546674 A - SMAP1 Frame_Shift_Del p.S205Vfs*15 0.25 TCGA-BR-7703-01 6 76024734 76024734 T C FILIP1 Missense_Mutation p.T272A 0.37 tolerated(0.1) benign(0.002) TCGA-BR-7703-01 6 76582940 76582940 G T MYO6 Missense_Mutation p.R667L 0.35 deleterious(0) unknown(0) TCGA-BR-7703-01 6 80223368 80223368 C T LCA5 Missense_Mutation p.R94Q 0.25 tolerated(0.39) benign(0.011) TCGA-BR-7703-01 6 80881109 80881109 T C BCKDHB Splice_Site p.X248_splice 0.33 TCGA-BR-7703-01 6 86256893 86256893 G A SNX14 Missense_Mutation p.R349C 0.17 deleterious(0.01) probably_damaging(0.967) TCGA-BR-7703-01 6 86283982 86283982 T C SNX14 Silent p.K85K 0.29 TCGA-BR-7703-01 6 93982022 93982022 G A EPHA7 Silent p.Y481Y 0.28 TCGA-BR-7703-01 7 100028067 100028068 - G MEPCE Frame_Shift_Ins p.G146Rfs*7 0.37 TCGA-BR-7703-01 7 100064674 100064674 G A TSC22D4 Missense_Mutation p.R366C 0.39 deleterious(0.01) possibly_damaging(0.874) TCGA-BR-7703-01 7 101870917 101870917 G A CUX1 Missense_Mutation p.R1145Q 0.40 tolerated(0.13) unknown(0) TCGA-BR-7703-01 7 102087196 102087196 C T ORAI2 Silent p.T154T 0.17 TCGA-BR-7703-01 7 102948086 102948086 C T PMPCB Silent p.F260F 0.35 TCGA-BR-7703-01 7 103113285 103113285 G A RELN Nonsense_Mutation p.R3453* 0.36 TCGA-BR-7703-01 7 103124242 103124242 T C RELN Missense_Mutation p.S3347G 0.34 tolerated(0.15) benign(0.04) TCGA-BR-7703-01 7 105429099 105429099 G A ATXN7L1 Silent p.C102C 0.27 TCGA-BR-7703-01 7 107395909 107395909 A - CBLL1 Frame_Shift_Del p.K140Rfs*52 0.24 TCGA-BR-7703-01 7 110764026 110764026 C T LRRN3 Missense_Mutation p.P400S 0.32 tolerated(0.07) possibly_damaging(0.788) TCGA-BR-7703-01 7 11675852 11675852 C A THSD7A Missense_Mutation p.Q309H 0.34 tolerated(0.34) possibly_damaging(0.498) TCGA-BR-7703-01 7 126173502 126173502 G T GRM8 Missense_Mutation p.T645K 0.32 tolerated(0.18) benign(0.109) TCGA-BR-7703-01 7 127235874 127235874 C T FSCN3 Missense_Mutation p.R220W 0.05 deleterious(0) probably_damaging(0.927) TCGA-BR-7703-01 7 128470957 128470957 G A FLNC Missense_Mutation p.R89H 0.18 deleterious(0) possibly_damaging(0.881) TCGA-BR-7703-01 7 142045534 142045534 C T TRBV4-2 Missense_Mutation p.T21M 0.09 deleterious(0.05) possibly_damaging(0.577) TCGA-BR-7703-01 7 143826482 143826482 T - OR2A14 Frame_Shift_Del p.P95Hfs*3 0.09 TCGA-BR-7703-01 7 146741062 146741062 G A CNTNAP2 Missense_Mutation p.A156T 0.25 tolerated(0.15) benign(0.437) TCGA-BR-7703-01 7 147844772 147844772 G A CNTNAP2 Missense_Mutation p.R915H 0.28 tolerated(0.16) possibly_damaging(0.842) TCGA-BR-7703-01 7 149500830 149500830 C T SSPO RNA 0.50 TCGA-BR-7703-01 7 150217082 150217082 G A GIMAP7 Missense_Mutation p.R7H 0.41 tolerated(0.08) benign(0.002) TCGA-BR-7703-01 7 150883931 150883931 C G ASB10 Missense_Mutation p.R96T 0.21 tolerated(0.33) benign(0.071) TCGA-BR-7703-01 7 151329217 151329217 A C PRKAG2 Missense_Mutation p.L231R 0.25 tolerated(0.3) benign(0.001) TCGA-BR-7703-01 7 1514368 1514368 G A INTS1 Missense_Mutation p.A1870V 0.33 deleterious(0) probably_damaging(0.998) TCGA-BR-7703-01 7 151962133 151962133 G A KMT2C Nonsense_Mutation p.Q392* 0.05 TCGA-BR-7703-01 7 24784260 24784260 C T DFNA5 Missense_Mutation p.V109I 0.42 tolerated(0.06) possibly_damaging(0.582) TCGA-BR-7703-01 7 29915533 29915533 C T WIPF3 Missense_Mutation p.R60C 0.08 deleterious(0) probably_damaging(1) TCGA-BR-7703-01 7 30197086 30197086 G A MTURN Silent p.A106A 0.30 TCGA-BR-7703-01 7 36396457 36396457 G C KIAA0895 Intron 0.28 TCGA-BR-7703-01 7 36396613 36396613 G C KIAA0895 Missense_Mutation p.F255L 0.35 tolerated(0.08) probably_damaging(0.995) TCGA-BR-7703-01 7 36397160 36397160 G C KIAA0895 Missense_Mutation p.S73C 0.36 tolerated_low_confidence(0.06) probably_damaging(0.91) TCGA-BR-7703-01 7 37901736 37901736 C T NME8 Missense_Mutation p.A126V 0.27 tolerated(0.31) benign(0.002) TCGA-BR-7703-01 7 4188998 4188998 C T SDK1 Missense_Mutation p.R1510W 0.33 deleterious(0) probably_damaging(1) TCGA-BR-7703-01 7 45115406 45115406 G A CCM2 Missense_Mutation p.S383N 0.22 tolerated(0.22) benign(0.02) TCGA-BR-7703-01 7 66413644 66413644 A G TMEM248 Missense_Mutation p.T187A 0.05 deleterious(0.02) probably_damaging(0.973) TCGA-BR-7703-01 7 73638506 73638506 C T LAT2 Missense_Mutation p.R203C 0.03 deleterious(0) probably_damaging(0.984) TCGA-BR-7703-01 7 75168711 75168711 C T HIP1 Missense_Mutation p.R998H 0.22 deleterious(0) probably_damaging(0.997) TCGA-BR-7703-01 7 77814969 77814969 G T MAGI2 Missense_Mutation p.T763N 0.27 deleterious(0.04) benign(0.24) TCGA-BR-7703-01 7 86468840 86468840 C T GRM3 Silent p.F670F 0.06 TCGA-BR-7703-01 7 87076415 87076415 G T ABCB4 Missense_Mutation p.L314M 0.08 deleterious(0) probably_damaging(0.997) TCGA-BR-7703-01 7 87174267 87174267 T - ABCB1 Frame_Shift_Del p.S646Vfs*17 0.09 TCGA-BR-7703-01 7 95906629 95906629 C T SLC25A13 Missense_Mutation p.G31S 0.20 deleterious(0.01) possibly_damaging(0.907) TCGA-BR-7703-01 8 105161049 105161049 C T RIMS2 Intron 0.23 TCGA-BR-7703-01 8 105361503 105361503 G T DCSTAMP Missense_Mutation p.K241N 0.24 deleterious(0) probably_damaging(0.918) TCGA-BR-7703-01 8 114389098 114389098 C A CSMD3 Intron 0.35 TCGA-BR-7703-01 8 11703216 11703216 G T CTSB Silent p.P292P 0.33 TCGA-BR-7703-01 8 125083798 125083798 G A FER1L6 Missense_Mutation p.G1340R 0.37 deleterious(0.04) benign(0.173) TCGA-BR-7703-01 8 133898733 133898733 G A TG Silent p.L372L 0.33 TCGA-BR-7703-01 8 134239730 134239730 G A WISP1 Missense_Mutation p.R294H 0.08 deleterious(0.04) benign(0.082) TCGA-BR-7703-01 8 139151232 139151232 T - FAM135B Frame_Shift_Del p.T1300Qfs*46 0.26 TCGA-BR-7703-01 8 140631311 140631311 C T KCNK9 Silent p.A105A 0.32 TCGA-BR-7703-01 8 142500242 142500242 G A MROH5 3'Flank 0.31 TCGA-BR-7703-01 8 144941378 144941378 C - EPPK1 Frame_Shift_Del p.G2015Vfs*36 0.41 TCGA-BR-7703-01 8 144995352 144995352 C - PLEC Frame_Shift_Del p.C3017Afs*43 0.17 TCGA-BR-7703-01 8 145557213 145557213 G A SCRT1 Silent p.C227C 0.56 TCGA-BR-7703-01 8 145749487 145749487 G T LRRC24 Intron 0.23 TCGA-BR-7703-01 8 15601103 15601103 G A TUSC3 Missense_Mutation p.D307N 0.31 tolerated(0.13) possibly_damaging(0.521) TCGA-BR-7703-01 8 18258064 18258064 A C NAT2 Missense_Mutation p.K184T 0.44 tolerated(0.47) benign(0.007) TCGA-BR-7703-01 8 20072357 20072357 G C ATP6V1B2 Missense_Mutation p.G319A 0.11 deleterious(0.01) probably_damaging(0.968) TCGA-BR-7703-01 8 22452185 22452185 C T PDLIM2 3'Flank 0.39 TCGA-BR-7703-01 8 23712082 23712083 - C STC1 5'UTR 0.18 TCGA-BR-7703-01 8 24771944 24771944 C T NEFM Missense_Mutation p.A213V 0.41 deleterious(0) unknown(0) TCGA-BR-7703-01 8 28385232 28385233 - G FZD3 Frame_Shift_Ins p.S321* 0.22 TCGA-BR-7703-01 8 28976394 28976394 A G KIF13B Silent p.H1217H 0.11 TCGA-BR-7703-01 8 30915970 30915971 - A WRN Frame_Shift_Ins p.L6Ifs*12 0.33 TCGA-BR-7703-01 8 41836217 41836217 C T KAT6A Missense_Mutation p.R329Q 0.27 probably_damaging(0.998) TCGA-BR-7703-01 8 41839431 41839431 G A KAT6A Nonsense_Mutation p.R251* 0.19 TCGA-BR-7703-01 8 56270310 56270311 - A XKR4 Frame_Shift_Ins p.M295Nfs*4 0.21 TCGA-BR-7703-01 8 57080658 57080658 T C PLAG1 Silent p.T57T 0.24 TCGA-BR-7703-01 8 65291742 65291742 G A MIR124-2 RNA 0.38 TCGA-BR-7703-01 8 65527633 65527633 C A CYP7B1 Missense_Mutation p.G336V 0.30 tolerated(0.07) probably_damaging(0.979) TCGA-BR-7703-01 8 70476305 70476305 G A SULF1 Missense_Mutation p.G32E 0.07 tolerated(0.06) possibly_damaging(0.512) TCGA-BR-7703-01 8 74515987 74515987 G A STAU2 Missense_Mutation p.P335S 0.23 tolerated(0.13) benign(0.124) TCGA-BR-7703-01 8 77768138 77768138 C A ZFHX4 Missense_Mutation p.P2994H 0.25 probably_damaging(0.998) TCGA-BR-7703-01 8 8643495 8643495 C T MFHAS1 3'UTR 0.29 TCGA-BR-7703-01 8 95751977 95751977 G A DPY19L4 Nonsense_Mutation p.W190* 0.23 TCGA-BR-7703-01 9 100678467 100678467 A G C9orf156 Missense_Mutation p.L77P 0.12 deleterious(0) probably_damaging(0.999) TCGA-BR-7703-01 9 101547146 101547146 C T ANKS6 Missense_Mutation p.R292K 0.28 tolerated(0.62) benign(0.007) TCGA-BR-7703-01 9 101747954 101747954 G A COL15A1 Missense_Mutation p.G70R 0.30 deleterious(0.03) benign(0.25) TCGA-BR-7703-01 9 111625036 111625036 C T ACTL7A Missense_Mutation p.T145I 0.32 deleterious(0.03) possibly_damaging(0.607) TCGA-BR-7703-01 9 112207536 112207536 C T PTPN3 Silent p.A150A 0.21 TCGA-BR-7703-01 9 113245948 113245948 C A SVEP1 Missense_Mutation p.W652C 0.50 possibly_damaging(0.755) TCGA-BR-7703-01 9 114345823 114345823 C T PTGR1 Missense_Mutation p.G142R 0.05 deleterious(0) probably_damaging(0.966) TCGA-BR-7703-01 9 116750765 116750765 A G ZNF618 Missense_Mutation p.K81R 0.35 deleterious_low_confidence(0.02) probably_damaging(0.995) TCGA-BR-7703-01 9 119130012 119130012 G A PAPPA Nonsense_Mutation p.W1528* 0.23 TCGA-BR-7703-01 9 124532938 124532938 G A DAB2IP Silent p.P643P 0.30 TCGA-BR-7703-01 9 125673938 125673938 T C ZBTB6 Silent p.Q138Q 0.06 TCGA-BR-7703-01 9 131568559 131568559 G A TBC1D13 Missense_Mutation p.G369E 0.22 tolerated(0.06) possibly_damaging(0.701) TCGA-BR-7703-01 9 134322525 134322525 T C PRRC2B Silent p.F303F 0.41 TCGA-BR-7703-01 9 135862760 135862760 G A GFI1B Silent p.P64P 0.23 TCGA-BR-7703-01 9 136597638 136597638 C A SARDH Missense_Mutation p.E139D 0.23 tolerated(0.05) benign(0.297) TCGA-BR-7703-01 9 137328340 137328340 G A RXRA Silent p.P423P 0.07 TCGA-BR-7703-01 9 138713536 138713536 C T CAMSAP1 Missense_Mutation p.V991M 0.41 deleterious(0.01) benign(0.212) TCGA-BR-7703-01 9 140127502 140127502 A G SLC34A3 Silent p.V165V 0.12 TCGA-BR-7703-01 9 27036517 27036517 G A IFT74 Intron 0.34 TCGA-BR-7703-01 9 32526164 32526164 T C DDX58 Translation_Start_Site p.M1? 0.39 deleterious(0) probably_damaging(0.993) TCGA-BR-7703-01 9 332438 332438 C T DOCK8 Missense_Mutation p.A362V 0.05 tolerated(0.31) benign(0.012) TCGA-BR-7703-01 9 37440593 37440593 C G ZBTB5 Missense_Mutation p.Q652H 0.28 deleterious(0) probably_damaging(0.999) TCGA-BR-7703-01 9 82323572 82323572 C A TLE4 Silent p.P378P 0.25 TCGA-BR-7703-01 9 88190328 88190328 T C AGTPBP1 Silent p.L1095L 0.26 TCGA-BR-7703-01 9 94493197 94493197 G A ROR2 Missense_Mutation p.S393L 0.32 tolerated(0.2) benign(0.006) TCGA-BR-7703-01 9 95219673 95219673 A G ASPN Missense_Mutation p.I347T 0.19 deleterious(0) probably_damaging(1) TCGA-BR-7703-01 9 95609710 95609710 T C ZNF484 Silent p.S455S 0.22 TCGA-BR-7703-01 9 98244469 98244469 G A PTCH1 Missense_Mutation p.H201Y 0.40 tolerated(0.06) benign(0.222) TCGA-BR-7703-01 X 100077380 100077380 C T CSTF2 Missense_Mutation p.A93V 0.22 tolerated(0.07) probably_damaging(0.955) TCGA-BR-7703-01 X 102193128 102193129 CT - RAB40AL 3'UTR 0.59 TCGA-BR-7703-01 X 125685490 125685490 C T DCAF12L1 Missense_Mutation p.G368S 0.19 deleterious(0.03) possibly_damaging(0.616) TCGA-BR-7703-01 X 130408768 130408768 G T IGSF1 Missense_Mutation p.P1191T 0.10 tolerated(0.28) probably_damaging(1) TCGA-BR-7703-01 X 140271020 140271020 G A LDOC1 Missense_Mutation p.R63W 0.73 deleterious(0) probably_damaging(0.999) TCGA-BR-7703-01 X 149101879 149101879 G A CXorf40B Missense_Mutation p.L72F 0.42 deleterious(0) probably_damaging(0.999) TCGA-BR-7703-01 X 149101975 149101975 C T CXorf40B Missense_Mutation p.A40T 0.70 deleterious(0.02) possibly_damaging(0.777) TCGA-BR-7703-01 X 152085675 152085675 G A ZNF185 Silent p.R75R 0.22 TCGA-BR-7703-01 X 152160186 152160186 C A PNMA5 5'UTR 0.09 TCGA-BR-7703-01 X 154305518 154305518 T C BRCC3 Missense_Mutation p.V90A 0.54 deleterious(0) probably_damaging(0.968) TCGA-BR-7703-01 X 1584882 1584882 C A P2RY8 Missense_Mutation p.W190C 0.07 deleterious(0) probably_damaging(0.99) TCGA-BR-7703-01 X 21609256 21609256 A - CNKSR2 Frame_Shift_Del p.K593Nfs*6 0.38 TCGA-BR-7703-01 X 24608251 24608251 G A PCYT1B Silent p.T125T 0.75 TCGA-BR-7703-01 X 34962029 34962029 C T FAM47B Missense_Mutation p.R361W 0.56 tolerated(1) benign(0) TCGA-BR-7703-01 X 41201759 41201759 G A DDX3X Missense_Mutation p.R99H 0.05 tolerated(0.18) benign(0.001) TCGA-BR-7703-01 X 66765081 66765081 C T AR Silent p.R31R 0.65 TCGA-BR-7703-01 X 68725612 68725613 - C FAM155B Frame_Shift_Ins p.L166Sfs*5 0.52 TCGA-BR-7703-01 X 71426804 71426808 TTAAT - ERCC6L Frame_Shift_Del p.L604Kfs*6 0.52 TCGA-BR-7703-01 X 83403075 83403075 C A RPS6KA6 Missense_Mutation p.K105N 0.57 deleterious(0) probably_damaging(1) TCGA-BR-7703-01 X 91133952 91133952 C T PCDH11X Silent p.L905L 0.06 TCGA-BR-7703-01 X 91873424 91873424 C T PCDH11X Silent p.L1177L 0.44 TCGA-BR-7703-01 Y 14951943 14951943 G A USP9Y Missense_Mutation p.V1831I 0.72 deleterious(0.01) possibly_damaging(0.837) TCGA-BR-7704-01 10 117226739 117226739 T G ATRNL1 Missense_Mutation p.I1158S 0.26 deleterious(0) possibly_damaging(0.827) TCGA-BR-7704-01 10 124379796 124379796 C T DMBT1 Missense_Mutation p.A1629V 0.37 tolerated(0.45) benign(0.313) TCGA-BR-7704-01 10 131639180 131639180 C T EBF3 Missense_Mutation p.A488T 0.23 tolerated_low_confidence(0.26) benign(0.035) TCGA-BR-7704-01 10 14816733 14816733 T G FAM107B 5'UTR 0.36 TCGA-BR-7704-01 10 16553244 16553244 A C PTER Missense_Mutation p.T347P 0.24 deleterious(0) probably_damaging(0.94) TCGA-BR-7704-01 10 17702492 17702492 G A STAM Missense_Mutation p.E24K 0.49 deleterious(0) probably_damaging(0.977) TCGA-BR-7704-01 10 24833163 24833163 C T KIAA1217 Missense_Mutation p.T1655I 0.15 deleterious(0) probably_damaging(0.999) TCGA-BR-7704-01 10 25284770 25284770 T A ENKUR Missense_Mutation p.K84N 0.05 deleterious(0.05) possibly_damaging(0.774) TCGA-BR-7704-01 10 3151629 3151629 G T PFKP Missense_Mutation p.G349V 0.27 deleterious(0.01) possibly_damaging(0.871) TCGA-BR-7704-01 10 43016278 43016278 A G ZNF37BP RNA 0.43 TCGA-BR-7704-01 10 49431234 49431234 C A FRMPD2 Missense_Mutation p.K416N 0.62 deleterious(0) benign(0.186) TCGA-BR-7704-01 10 50255037 50255037 T A VSTM4 Missense_Mutation p.K276N 0.27 deleterious(0.01) benign(0.357) TCGA-BR-7704-01 10 50955074 50955074 C G OGDHL Splice_Site p.X389_splice 0.49 TCGA-BR-7704-01 10 68940188 68940188 C A CTNNA3 Missense_Mutation p.A312S 0.42 deleterious(0) possibly_damaging(0.694) TCGA-BR-7704-01 10 78651324 78651324 C A KCNMA1 Missense_Mutation p.A1084S 0.42 tolerated(0.05) possibly_damaging(0.837) TCGA-BR-7704-01 10 81272683 81272683 G T EIF5AL1 Missense_Mutation p.G93V 0.66 deleterious(0.01) possibly_damaging(0.833) TCGA-BR-7704-01 10 88911205 88911205 G T FAM35A Missense_Mutation p.V32F 0.26 deleterious(0) benign(0.331) TCGA-BR-7704-01 10 89692993 89692993 G T PTEN Missense_Mutation p.R159S 0.43 deleterious(0) probably_damaging(0.998) TCGA-BR-7704-01 11 100168424 100168424 G A CNTN5 Nonsense_Mutation p.W794* 0.18 TCGA-BR-7704-01 11 116827717 116827717 C T SIK3 Missense_Mutation p.E55K 0.27 deleterious(0) probably_damaging(0.999) TCGA-BR-7704-01 11 118352441 118352441 A - KMT2A Frame_Shift_Del p.E1217Rfs*18 0.14 TCGA-BR-7704-01 11 118461214 118461215 - G ARCN1 Frame_Shift_Ins p.L327Afs*9 0.34 TCGA-BR-7704-01 11 119145617 119145617 G C CBL Missense_Mutation p.D275H 0.05 deleterious(0) probably_damaging(0.989) TCGA-BR-7704-01 11 12023884 12023884 C G DKK3 Missense_Mutation p.G105A 0.70 deleterious(0) possibly_damaging(0.844) TCGA-BR-7704-01 11 122650272 122650272 A C UBASH3B Missense_Mutation p.K157T 0.21 tolerated(0.53) benign(0.169) TCGA-BR-7704-01 11 124007906 124007906 G T VWA5A Missense_Mutation p.A604S 0.15 tolerated(0.26) benign(0.002) TCGA-BR-7704-01 11 124180067 124180067 A C OR8D1 Missense_Mutation p.L199R 0.25 deleterious(0) probably_damaging(0.933) TCGA-BR-7704-01 11 128844888 128844888 T C ARHGAP32 Missense_Mutation p.K721R 0.25 tolerated(0.09) possibly_damaging(0.889) TCGA-BR-7704-01 11 19961238 19961238 G T NAV2 Missense_Mutation p.A712S 0.11 tolerated(0.19) benign(0.156) TCGA-BR-7704-01 11 22232833 22232833 C G ANO5 Silent p.T37T 0.27 TCGA-BR-7704-01 11 26655759 26655759 C T ANO3 Nonsense_Mutation p.R628* 0.18 TCGA-BR-7704-01 11 31086675 31086675 T C DCDC1 Missense_Mutation p.Y775C 0.64 deleterious(0) probably_damaging(0.975) TCGA-BR-7704-01 11 33054236 33054236 A G DEPDC7 Missense_Mutation p.K387R 0.07 deleterious(0.02) probably_damaging(0.98) TCGA-BR-7704-01 11 35457534 35457534 G T PAMR1 Missense_Mutation p.P434H 0.33 deleterious(0.02) probably_damaging(0.967) TCGA-BR-7704-01 11 36300048 36300048 G T COMMD9 Missense_Mutation p.T99K 0.58 deleterious(0) probably_damaging(0.946) TCGA-BR-7704-01 11 43904723 43904723 C G ALKBH3 Missense_Mutation p.F56L 0.46 deleterious(0.01) possibly_damaging(0.507) TCGA-BR-7704-01 11 47330873 47330873 G A MADD Missense_Mutation p.E1325K 0.42 deleterious(0) probably_damaging(0.995) TCGA-BR-7704-01 11 499100 499100 C T RNH1 Missense_Mutation p.V177I 0.44 tolerated(0.11) benign(0.109) TCGA-BR-7704-01 11 51516067 51516067 T G OR4C46 Silent p.T262T 0.47 TCGA-BR-7704-01 11 55735739 55735739 G A OR10AG1 Silent p.I67I 0.22 TCGA-BR-7704-01 11 55999993 55999993 G A OR5T2 Silent p.L223L 0.41 TCGA-BR-7704-01 11 60184453 60184453 T G MS4A14 Missense_Mutation p.L704R 0.20 deleterious_low_confidence(0.04) benign(0.267) TCGA-BR-7704-01 11 64359010 64359010 G T SLC22A12 5'UTR 0.33 TCGA-BR-7704-01 11 64428403 64428403 G T NRXN2 Missense_Mutation p.D669E 0.51 deleterious(0) benign(0) TCGA-BR-7704-01 11 64533411 64533411 G C SF1 Intron 0.67 TCGA-BR-7704-01 11 64717264 64717264 A T C11orf85 Silent p.V100V 0.39 TCGA-BR-7704-01 11 65113830 65113830 C T DPF2 Silent p.D339D 0.49 TCGA-BR-7704-01 11 66052071 66052071 A G YIF1A 3'UTR 0.38 TCGA-BR-7704-01 11 66191589 66191589 C T NPAS4 Missense_Mutation p.P410S 0.46 tolerated(0.39) benign(0.001) TCGA-BR-7704-01 11 6638035 6638035 C A TPP1 Missense_Mutation p.G248V 0.31 deleterious(0.04) probably_damaging(0.976) TCGA-BR-7704-01 11 6653650 6653650 A G DCHS1 Silent p.P1031P 0.64 TCGA-BR-7704-01 11 67200659 67200659 C T RPS6KB2 Missense_Mutation p.A257V 0.62 tolerated(0.66) benign(0.33) TCGA-BR-7704-01 11 68475825 68475825 G T MTL5 Nonsense_Mutation p.S493* 0.25 TCGA-BR-7704-01 11 76234316 76234316 C A C11orf30 Missense_Mutation p.T601K 0.20 deleterious(0) probably_damaging(0.95) TCGA-BR-7704-01 11 95569393 95569393 G T MTMR2 Silent p.V563V 0.45 TCGA-BR-7704-01 12 10568373 10568373 G C KLRC3 Missense_Mutation p.A203G 0.08 tolerated(0.59) benign(0) TCGA-BR-7704-01 12 116434872 116434872 T C MED13L Silent p.T911T 0.36 TCGA-BR-7704-01 12 21172239 21172239 A C SLCO1B7 Missense_Mutation p.K48T 0.22 deleterious(0) probably_damaging(0.913) TCGA-BR-7704-01 12 21997442 21997442 G A ABCC9 Missense_Mutation p.S1097L 0.63 deleterious(0) probably_damaging(0.996) TCGA-BR-7704-01 12 40753186 40753186 T C LRRK2 Missense_Mutation p.I2323T 0.62 deleterious(0) benign(0.125) TCGA-BR-7704-01 12 46298716 46298716 G C ARID2 Splice_Site p.X1788_splice 0.51 TCGA-BR-7704-01 12 53044145 53044145 G T KRT2 Missense_Mutation p.L260I 0.27 deleterious(0.03) probably_damaging(0.91) TCGA-BR-7704-01 12 54803127 54803127 G A ITGA5 Missense_Mutation p.P158S 0.37 deleterious(0) probably_damaging(0.952) TCGA-BR-7704-01 12 54967231 54967231 A T PDE1B Missense_Mutation p.N310I 0.58 deleterious(0) probably_damaging(0.966) TCGA-BR-7704-01 12 54975775 54975775 A T PPP1R1A Missense_Mutation p.S130T 0.28 tolerated(0.23) benign(0.018) TCGA-BR-7704-01 12 58004392 58004392 C T ARHGEF25 Missense_Mutation p.P47S 0.67 deleterious_low_confidence(0.03) benign(0.066) TCGA-BR-7704-01 12 6128804 6128804 C A VWF Missense_Mutation p.E1260D 0.59 tolerated(0.22) possibly_damaging(0.636) TCGA-BR-7704-01 12 69991508 69991508 C T CCT2 Missense_Mutation p.A398V 0.51 tolerated(0.18) benign(0.007) TCGA-BR-7704-01 12 72366417 72366417 T G TPH2 Missense_Mutation p.F243V 0.63 deleterious(0) benign(0.259) TCGA-BR-7704-01 12 72956767 72956767 T C TRHDE Silent p.H618H 0.53 TCGA-BR-7704-01 12 85441191 85441191 A C LRRIQ1 Silent p.R207R 0.33 TCGA-BR-7704-01 12 9304868 9304868 A C PZP Missense_Mutation p.V1387G 0.64 deleterious(0) probably_damaging(0.947) TCGA-BR-7704-01 13 100199353 100199353 A G TM9SF2 Missense_Mutation p.Y422C 0.21 deleterious(0) probably_damaging(1) TCGA-BR-7704-01 13 101714417 101714417 A G NALCN Missense_Mutation p.L1553P 0.42 deleterious(0) probably_damaging(0.998) TCGA-BR-7704-01 13 102235690 102235690 T C ITGBL1 Silent p.S284S 0.21 TCGA-BR-7704-01 13 103703731 103703731 C T SLC10A2 Missense_Mutation p.G213R 0.44 tolerated(0.08) probably_damaging(0.917) TCGA-BR-7704-01 13 20024422 20024422 G C TPTE2 Missense_Mutation p.H289D 0.47 deleterious(0) probably_damaging(1) TCGA-BR-7704-01 13 21306107 21306107 G C N6AMT2 Silent p.P127P 0.41 TCGA-BR-7704-01 13 29601027 29601027 A C MTUS2 Missense_Mutation p.K741T 0.44 deleterious(0.02) benign(0.357) TCGA-BR-7704-01 13 32977295 32977295 C T N4BP2L1 Missense_Mutation p.M172I 0.21 deleterious(0) probably_damaging(0.995) TCGA-BR-7704-01 13 37007220 37007220 A C CCNA1 Silent p.G53G 0.40 TCGA-BR-7704-01 13 43934124 43934124 T C ENOX1 Missense_Mutation p.E151G 0.24 deleterious(0) probably_damaging(0.954) TCGA-BR-7704-01 13 53419718 53419718 G A PCDH8 Missense_Mutation p.A894V 0.18 deleterious(0.01) possibly_damaging(0.889) TCGA-BR-7704-01 14 104139748 104139748 G T KLC1 Missense_Mutation p.R414M 0.38 deleterious(0) possibly_damaging(0.823) TCGA-BR-7704-01 14 22362702 22362702 G A TRAV8-4 5'UTR 0.60 TCGA-BR-7704-01 14 22636839 22636839 G T TRAV30 Missense_Mutation p.A98S 0.40 benign(0.148) TCGA-BR-7704-01 14 36841061 36841061 G C DPPA3P2 RNA 0.04 TCGA-BR-7704-01 14 45414614 45414615 - C KLHL28 Frame_Shift_Ins p.F173Cfs*3 0.23 TCGA-BR-7704-01 14 51239704 51239704 G C NIN Missense_Mutation p.T259S 0.21 deleterious(0) probably_damaging(0.993) TCGA-BR-7704-01 14 53386031 53386031 C A FERMT2 Missense_Mutation p.K67N 0.22 deleterious(0.04) benign(0.034) TCGA-BR-7704-01 14 59954532 59954532 C T JKAMP Silent p.Y79Y 0.33 TCGA-BR-7704-01 14 64483265 64483265 A G SYNE2 Silent p.L1601L 0.24 TCGA-BR-7704-01 14 67675026 67675026 T A FAM71D Silent p.T340T 0.37 TCGA-BR-7704-01 14 68273333 68273333 G C ZFYVE26 Missense_Mutation p.P316A 0.33 tolerated(0.33) benign(0.173) TCGA-BR-7704-01 14 70634187 70634187 C T SLC8A3 Missense_Mutation p.R318Q 0.35 tolerated(0.33) benign(0.029) TCGA-BR-7704-01 14 70712997 70712997 C T ADAM21P1 RNA 0.28 TCGA-BR-7704-01 14 72055765 72055765 G A SIPA1L1 Silent p.L392L 0.27 TCGA-BR-7704-01 14 74874600 74874600 G C SYNDIG1L Silent p.L170L 0.22 TCGA-BR-7704-01 14 80328202 80328202 C T NRXN3 Silent p.I1027I 0.33 TCGA-BR-7704-01 14 92470272 92470272 C T TRIP11 Missense_Mutation p.E1350K 0.34 deleterious(0.03) benign(0.392) TCGA-BR-7704-01 14 92959928 92959928 G A SLC24A4 Missense_Mutation p.V609I 0.36 tolerated(0.15) benign(0.315) TCGA-BR-7704-01 15 26806140 26806140 T A GABRB3 Missense_Mutation p.K340M 0.50 deleterious(0) probably_damaging(0.987) TCGA-BR-7704-01 15 28211866 28211866 G T OCA2 Missense_Mutation p.L536I 0.45 deleterious(0) benign(0.424) TCGA-BR-7704-01 15 34129190 34129190 T C RYR3 Splice_Site p.X3884_splice 0.53 TCGA-BR-7704-01 15 48063084 48063084 A G SEMA6D Missense_Mutation p.E775G 0.40 deleterious(0) probably_damaging(0.997) TCGA-BR-7704-01 15 53908253 53908253 T G WDR72 Missense_Mutation p.K717T 0.40 tolerated(0.15) benign(0.089) TCGA-BR-7704-01 15 86311776 86311776 G T KLHL25 Missense_Mutation p.N422K 0.39 deleterious(0) probably_damaging(0.996) TCGA-BR-7704-01 16 14758921 14758921 G C BFAR Missense_Mutation p.E385Q 0.33 tolerated(0.1) possibly_damaging(0.71) TCGA-BR-7704-01 16 20871547 20871547 G T DCUN1D3 Missense_Mutation p.D192E 0.59 deleterious(0) probably_damaging(0.999) TCGA-BR-7704-01 16 27509002 27509002 T G GTF3C1 Missense_Mutation p.N769T 0.28 tolerated(0.05) benign(0.001) TCGA-BR-7704-01 16 4016160 4016160 T C ADCY9 Silent p.R1226R 0.35 TCGA-BR-7704-01 16 50342255 50342255 T A ADCY7 Missense_Mutation p.V623E 0.61 deleterious(0) benign(0.333) TCGA-BR-7704-01 16 50343519 50343519 G A ADCY7 Missense_Mutation p.A708T 0.66 tolerated(0.43) benign(0.001) TCGA-BR-7704-01 16 51175799 51175799 C T SALL1 Missense_Mutation p.D112N 0.28 tolerated(0.23) benign(0.011) TCGA-BR-7704-01 16 55527097 55527097 C A MMP2 Missense_Mutation p.T455N 0.59 tolerated(0.06) benign(0.142) TCGA-BR-7704-01 16 56652646 56652647 - T MT1L RNA 0.45 TCGA-BR-7704-01 16 85111161 85111161 G A KIAA0513 Silent p.S235S 0.56 TCGA-BR-7704-01 17 10216005 10216005 C T MYH13 Silent p.S1417S 0.33 TCGA-BR-7704-01 17 10351989 10351989 C T MYH4 Missense_Mutation p.E1493K 0.49 deleterious(0.01) probably_damaging(0.999) TCGA-BR-7704-01 17 27031231 27031231 C G PROCA1 Splice_Site p.X119_splice 0.21 TCGA-BR-7704-01 17 35300353 35300353 G A LHX1 Silent p.L382L 0.25 TCGA-BR-7704-01 17 39324304 39324304 G A KRTAP4-3 Missense_Mutation p.R41C 0.31 deleterious(0.01) unknown(0) TCGA-BR-7704-01 17 54912210 54912210 G A DGKE Silent p.A18A 0.29 TCGA-BR-7704-01 17 54912211 54912211 G T DGKE Missense_Mutation p.D19Y 0.29 deleterious_low_confidence(0) possibly_damaging(0.736) TCGA-BR-7704-01 17 67136759 67136759 T A ABCA6 Missense_Mutation p.E29V 0.36 deleterious(0) possibly_damaging(0.876) TCGA-BR-7704-01 17 71192707 71192707 A G COG1 Missense_Mutation p.E126G 0.40 tolerated(0.07) benign(0.371) TCGA-BR-7704-01 17 71192711 71192711 T A COG1 Silent p.I127I 0.41 TCGA-BR-7704-01 17 73913844 73913844 C G FBF1 Missense_Mutation p.R810P 0.15 deleterious(0) possibly_damaging(0.712) TCGA-BR-7704-01 17 74077711 74077711 G C ZACN Missense_Mutation p.G252A 0.31 tolerated(1) benign(0.031) TCGA-BR-7704-01 17 74093928 74093928 G A EXOC7 Nonsense_Mutation p.Q197* 0.35 TCGA-BR-7704-01 17 79671335 79671335 G A SLC25A10 Missense_Mutation p.E46K 0.41 deleterious_low_confidence(0) benign(0.039) TCGA-BR-7704-01 18 29054099 29054099 C T DSG3 Missense_Mutation p.T706M 0.63 tolerated(0.06) benign(0.104) TCGA-BR-7704-01 18 43262349 43262349 C A SLC14A2 Silent p.T876T 0.32 TCGA-BR-7704-01 18 43440160 43440160 C T EPG5 Silent p.L2306L 0.65 TCGA-BR-7704-01 18 55338741 55338741 G A ATP8B1 Nonsense_Mutation p.R631* 0.55 TCGA-BR-7704-01 18 77659615 77659615 G A KCNG2 Silent p.P400P 0.67 TCGA-BR-7704-01 19 10221724 10221724 G T PPAN Intron 0.37 TCGA-BR-7704-01 19 10334638 10334638 C T S1PR2 Missense_Mutation p.R315Q 0.76 tolerated(0.64) benign(0.238) TCGA-BR-7704-01 19 11138521 11138521 C T SMARCA4 Nonsense_Mutation p.R1093* 0.61 TCGA-BR-7704-01 19 14817553 14817553 G T ZNF333 Missense_Mutation p.G160V 0.30 deleterious_low_confidence(0.01) probably_damaging(0.953) TCGA-BR-7704-01 19 19681015 19681015 C T PBX4 Missense_Mutation p.G179S 0.66 tolerated(0.79) benign(0.023) TCGA-BR-7704-01 19 35773465 35773465 C A HAMP 5'UTR 0.04 TCGA-BR-7704-01 19 38873943 38873943 G A PSMD8 Silent p.Q322Q 0.77 TCGA-BR-7704-01 19 39439306 39439306 C A CTC-360G5.8 Missense_Mutation p.G26V 0.62 deleterious_low_confidence(0.01) probably_damaging(0.98) TCGA-BR-7704-01 19 40901570 40901570 G A PRX Nonsense_Mutation p.R897* 0.55 TCGA-BR-7704-01 19 42187748 42187748 C G CEACAM7 Missense_Mutation p.S225T 0.30 tolerated(0.21) benign(0.21) TCGA-BR-7704-01 19 44339701 44339701 A C ZNF283 Missense_Mutation p.H56P 0.53 tolerated(0.06) benign(0.02) TCGA-BR-7704-01 19 44339705 44339712 AGCATTAA - ZNF283 Frame_Shift_Del p.A58* 0.43 TCGA-BR-7704-01 19 45871885 45871885 C T ERCC2 Intron 0.62 TCGA-BR-7704-01 19 47028997 47028997 C T PPP5D1 Missense_Mutation p.V94M 0.13 tolerated(0.29) probably_damaging(0.997) TCGA-BR-7704-01 19 50086866 50086866 C A PRRG2 Missense_Mutation p.N51K 0.59 deleterious(0) probably_damaging(0.998) TCGA-BR-7704-01 19 9085519 9085519 G C MUC16 Missense_Mutation p.S2099C 0.34 unknown(0) TCGA-BR-7704-01 1 103449740 103449740 A C COL11A1 Missense_Mutation p.L837R 0.33 unknown(0) TCGA-BR-7704-01 1 108322080 108322080 G A VAV3 Missense_Mutation p.P119L 0.10 tolerated(0.09) benign(0.081) TCGA-BR-7704-01 1 113633962 113633962 T C LRIG2 Missense_Mutation p.S88P 0.32 tolerated(0.08) benign(0.212) TCGA-BR-7704-01 1 115323125 115323125 G T SIKE1 Missense_Mutation p.A35E 0.36 deleterious(0.03) possibly_damaging(0.506) TCGA-BR-7704-01 1 115323126 115323126 C T SIKE1 Missense_Mutation p.A35T 0.38 tolerated(0.47) benign(0.026) TCGA-BR-7704-01 1 118530484 118530484 C T SPAG17 Missense_Mutation p.R1881H 0.22 tolerated(0.4) benign(0.006) TCGA-BR-7704-01 1 120846117 120846117 C T FAM72B Missense_Mutation p.T118I 0.15 deleterious(0.03) benign(0.156) TCGA-BR-7704-01 1 145103921 145103921 T A SEC22B RNA 0.13 TCGA-BR-7704-01 1 146057371 146057371 G C NBPF11 Missense_Mutation p.Q81E 0.25 deleterious(0.04) possibly_damaging(0.764) TCGA-BR-7704-01 1 152648762 152648762 T C LCE2C Missense_Mutation p.C91R 0.29 deleterious_low_confidence(0) unknown(0) TCGA-BR-7704-01 1 156812930 156812930 C T INSRR Missense_Mutation p.A998T 0.15 deleterious(0.03) possibly_damaging(0.573) TCGA-BR-7704-01 1 156884531 156884531 T A PEAR1 Missense_Mutation p.Y1019N 0.30 deleterious(0) probably_damaging(0.999) TCGA-BR-7704-01 1 158435960 158435960 T C OR10K1 Silent p.G203G 0.36 TCGA-BR-7704-01 1 165322361 165322361 G T LMX1A Missense_Mutation p.T72N 0.24 deleterious(0.01) possibly_damaging(0.685) TCGA-BR-7704-01 1 17609472 17609472 T A PADI3 Silent p.I631I 0.24 TCGA-BR-7704-01 1 181764122 181764122 T A CACNA1E Silent p.R2050R 0.31 TCGA-BR-7704-01 1 201779757 201779757 C A NAV1 Silent p.L1556L 0.32 TCGA-BR-7704-01 1 20517104 20517104 T C UBXN10 Missense_Mutation p.V17A 0.27 tolerated(1) benign(0.01) TCGA-BR-7704-01 1 216498893 216498893 T A USH2A Missense_Mutation p.Q299H 0.46 probably_damaging(0.999) TCGA-BR-7704-01 1 22181166 22181166 C T HSPG2 Missense_Mutation p.G2076R 0.44 probably_damaging(1) TCGA-BR-7704-01 1 226342426 226342426 C T ACBD3 Missense_Mutation p.A338T 0.31 tolerated(0.17) possibly_damaging(0.622) TCGA-BR-7704-01 1 228525812 228525812 G T OBSCN Missense_Mutation p.W6613C 0.33 probably_damaging(0.999) TCGA-BR-7704-01 1 231403644 231403644 G C GNPAT Missense_Mutation p.W425S 0.43 deleterious(0) probably_damaging(0.999) TCGA-BR-7704-01 1 236646442 236646442 G C EDARADD 3'Flank 0.35 TCGA-BR-7704-01 1 237813237 237813237 T G RYR2 Missense_Mutation p.L2525V 0.29 probably_damaging(0.997) TCGA-BR-7704-01 1 237947520 237947520 A G RYR2 Missense_Mutation p.R4170G 0.25 probably_damaging(0.999) TCGA-BR-7704-01 1 24407915 24407915 T A MYOM3 Missense_Mutation p.E771V 0.38 deleterious(0) possibly_damaging(0.904) TCGA-BR-7704-01 1 244716101 244716101 C G C1orf101 Silent p.V338V 0.21 TCGA-BR-7704-01 1 247608050 247608050 G C NLRP3 Missense_Mutation p.D980H 0.35 tolerated(0.13) probably_damaging(0.995) TCGA-BR-7704-01 1 247769370 247769370 T C OR2G3 Silent p.T161T 0.34 TCGA-BR-7704-01 1 248524929 248524929 T C OR2T4 Missense_Mutation p.F16S 0.45 deleterious_low_confidence(0.02) benign(0.002) TCGA-BR-7704-01 1 24996643 24996643 G C SRRM1 Missense_Mutation p.R746T 0.26 unknown(0) TCGA-BR-7704-01 1 33760823 33760823 T A ZNF362 Missense_Mutation p.S355T 0.31 deleterious(0.02) possibly_damaging(0.906) TCGA-BR-7704-01 1 34192262 34192262 G A CSMD2 Missense_Mutation p.S758L 0.23 deleterious(0) benign(0.212) TCGA-BR-7704-01 1 41475181 41475181 C A CTPS1 Silent p.S537S 0.08 TCGA-BR-7704-01 1 43805796 43805796 A C MPL Silent p.A284A 0.53 TCGA-BR-7704-01 1 45292299 45292299 G C PTCH2 Missense_Mutation p.P946R 0.17 deleterious(0) probably_damaging(1) TCGA-BR-7704-01 1 52704195 52704195 C T ZFYVE9 Missense_Mutation p.A369V 0.08 tolerated_low_confidence(0.18) benign(0.005) TCGA-BR-7704-01 1 85392293 85392293 G T MCOLN2 3'UTR 0.24 TCGA-BR-7704-01 1 86964455 86964455 A T CLCA1 Missense_Mutation p.T772S 0.29 tolerated(0.81) probably_damaging(0.997) TCGA-BR-7704-01 1 87025891 87025891 C T CLCA4 Intron 0.20 TCGA-BR-7704-01 1 87025894 87025894 G T CLCA4 Missense_Mutation p.A101S 0.22 deleterious(0) probably_damaging(0.976) TCGA-BR-7704-01 1 90048282 90048282 G C LRRC8B Missense_Mutation p.D25H 0.04 deleterious(0) probably_damaging(0.999) TCGA-BR-7704-01 1 957708 957708 G C AGRN Missense_Mutation p.G110A 0.07 deleterious_low_confidence(0) possibly_damaging(0.857) TCGA-BR-7704-01 1 9770531 9770531 C A PIK3CD Missense_Mutation p.D6E 0.29 tolerated_low_confidence(0.25) benign(0.2) TCGA-BR-7704-01 1 97770822 97770822 T A DPYD Silent p.G764G 0.34 TCGA-BR-7704-01 1 99358629 99358629 C A LPPR5 Nonstop_Mutation p.*322Lext*36 0.37 TCGA-BR-7704-01 20 16348445 16348445 C T KIF16B Silent p.L1175L 0.18 TCGA-BR-7704-01 20 17389911 17389911 G T PCSK2 Missense_Mutation p.A183S 0.14 tolerated(0.12) benign(0.02) TCGA-BR-7704-01 20 17606216 17606216 G A RRBP1 Silent p.L566L 0.10 TCGA-BR-7704-01 20 18432537 18432537 C T DZANK1 Intron 0.34 TCGA-BR-7704-01 20 20150036 20150036 A C C20orf26 Missense_Mutation p.K439N 0.16 deleterious(0) benign(0.302) TCGA-BR-7704-01 20 23472508 23472508 G T CST8 Silent p.V68V 0.16 TCGA-BR-7704-01 20 23729696 23729696 T - CST1 Frame_Shift_Del p.N100Tfs*35 0.14 TCGA-BR-7704-01 20 29976843 29976843 A T DEFB119 Missense_Mutation p.N84K 0.10 tolerated_low_confidence(0.16) possibly_damaging(0.859) TCGA-BR-7704-01 20 31388715 31388715 C T DNMT3B Silent p.A660A 0.17 TCGA-BR-7704-01 20 31627289 31627289 G A BPIFB6 Missense_Mutation p.R346Q 0.34 tolerated(0.37) benign(0.184) TCGA-BR-7704-01 20 35526364 35526364 T A SAMHD1 Splice_Site p.X537_splice 0.35 TCGA-BR-7704-01 20 36870039 36870039 C A KIAA1755 Missense_Mutation p.C165F 0.17 deleterious(0) probably_damaging(0.999) TCGA-BR-7704-01 20 40713354 40713354 G A PTPRT Silent p.D1368D 0.22 TCGA-BR-7704-01 20 43837264 43837264 A C SEMG1 Missense_Mutation p.E442D 0.34 tolerated(0.54) benign(0.106) TCGA-BR-7704-01 20 50406883 50406883 G A SALL4 Silent p.P713P 0.29 TCGA-BR-7704-01 20 52786173 52786173 C G CYP24A1 Missense_Mutation p.V200L 0.20 deleterious(0.02) benign(0.016) TCGA-BR-7704-01 20 57896115 57896115 C T EDN3 Missense_Mutation p.R137W 0.11 deleterious(0) probably_damaging(0.999) TCGA-BR-7704-01 20 58475227 58475227 C A SYCP2 Missense_Mutation p.S457I 0.10 tolerated(0.13) benign(0.329) TCGA-BR-7704-01 20 61467870 61467870 G T COL9A3 Missense_Mutation p.G530V 0.08 tolerated(0.17) possibly_damaging(0.571) TCGA-BR-7704-01 20 61598822 61598822 G C SLC17A9 Silent p.V427V 0.16 TCGA-BR-7704-01 20 8709793 8709793 G T PLCB1 Missense_Mutation p.Q620H 0.19 deleterious(0) probably_damaging(0.999) TCGA-BR-7704-01 21 38865409 38865409 G C DYRK1A Missense_Mutation p.G348R 0.42 deleterious(0) probably_damaging(1) TCGA-BR-7704-01 22 19770491 19770491 G T GNB1L 3'Flank 0.53 TCGA-BR-7704-01 22 20100088 20100088 A C TRMT2A Nonstop_Mutation p.*626Eext*54 0.39 TCGA-BR-7704-01 22 23488843 23488843 C T RAB36 Missense_Mutation p.R80C 0.16 deleterious(0) probably_damaging(0.953) TCGA-BR-7704-01 22 24040479 24040479 C G RGL4 Silent p.V447V 0.30 TCGA-BR-7704-01 22 24656895 24656895 C A POM121L9P RNA 0.15 TCGA-BR-7704-01 22 25320202 25320202 C T SGSM1 Silent p.D1136D 0.15 TCGA-BR-7704-01 22 26995587 26995587 T C CRYBB1 Missense_Mutation p.E209G 0.18 deleterious(0) probably_damaging(0.997) TCGA-BR-7704-01 22 31010467 31010467 C T TCN2 Missense_Mutation p.H187Y 0.13 tolerated(0.28) benign(0.006) TCGA-BR-7704-01 22 32439244 32439244 G A SLC5A1 5'UTR 0.37 TCGA-BR-7704-01 22 36123079 36123079 A T APOL5 Missense_Mutation p.R322W 0.23 deleterious(0) probably_damaging(0.97) TCGA-BR-7704-01 22 37322200 37322200 C T CSF2RB Silent p.T124T 0.19 TCGA-BR-7704-01 22 40037134 40037134 A T CACNA1I Nonsense_Mutation p.K335* 0.45 TCGA-BR-7704-01 22 40066108 40066108 C A CACNA1I Missense_Mutation p.F1420L 0.25 deleterious(0.01) benign(0.418) TCGA-BR-7704-01 22 50488550 50488550 C T TTLL8 Missense_Mutation p.A96T 0.10 tolerated(0.46) benign(0.003) TCGA-BR-7704-01 2 108626799 108626799 A C SLC5A7 Missense_Mutation p.S409R 0.21 deleterious(0.01) possibly_damaging(0.519) TCGA-BR-7704-01 2 11053005 11053005 C A KCNF1 Missense_Mutation p.D151E 0.40 tolerated(0.56) possibly_damaging(0.538) TCGA-BR-7704-01 2 121744183 121744183 G A GLI2 Silent p.P762P 0.50 TCGA-BR-7704-01 2 133489467 133489467 A C NCKAP5 Silent p.S1762S 0.24 TCGA-BR-7704-01 2 137990616 137990616 G T THSD7B Missense_Mutation p.W688L 0.13 tolerated(0.13) possibly_damaging(0.504) TCGA-BR-7704-01 2 138163188 138163188 T A THSD7B Missense_Mutation p.S836T 0.51 tolerated(0.57) benign(0.294) TCGA-BR-7704-01 2 166535369 166535369 G A CSRNP3 Silent p.L288L 0.28 TCGA-BR-7704-01 2 166611517 166611517 T C GALNT3 Silent p.K483K 0.07 TCGA-BR-7704-01 2 166848769 166848769 G A SCN1A Silent p.N1672N 0.48 TCGA-BR-7704-01 2 166897847 166897847 A G SCN1A Missense_Mutation p.V770A 0.48 tolerated(0.28) possibly_damaging(0.865) TCGA-BR-7704-01 2 170063676 170063676 A C LRP2 Missense_Mutation p.L2185R 0.30 probably_damaging(0.928) TCGA-BR-7704-01 2 179444224 179444224 G T TTN Intron 0.27 TCGA-BR-7704-01 2 179453733 179453733 T G TTN Missense_Mutation p.K20907Q 0.29 TCGA-BR-7704-01 2 179456116 179456116 C T TTN Nonsense_Mutation p.W20112* 0.03 TCGA-BR-7704-01 2 179501403 179501403 T C TTN Missense_Mutation p.K13684R 0.30 TCGA-BR-7704-01 2 179554061 179554061 T C TTN Missense_Mutation p.K10656R 0.34 TCGA-BR-7704-01 2 179604512 179604512 T C TTN Missense_Mutation p.E4483G 0.49 TCGA-BR-7704-01 2 179611317 179611317 T C TTN Intron 0.22 TCGA-BR-7704-01 2 183622502 183622502 C A DNAJC10 Nonsense_Mutation p.Y631* 0.22 TCGA-BR-7704-01 2 196825250 196825250 A T DNAH7 Silent p.S875S 0.27 TCGA-BR-7704-01 2 201776038 201776038 C G ORC2 Missense_Mutation p.E574Q 0.17 deleterious(0.04) benign(0.066) TCGA-BR-7704-01 2 204820653 204820654 - T ICOS Frame_Shift_Ins p.K120* 0.24 TCGA-BR-7704-01 2 210558202 210558202 T C MAP2 Silent p.T436T 0.21 TCGA-BR-7704-01 2 210574735 210574735 T G MAP2 Silent p.S1610S 0.24 TCGA-BR-7704-01 2 211421390 211421390 A T CPS1 Intron 0.29 TCGA-BR-7704-01 2 218940223 218940223 A T RUFY4 Missense_Mutation p.E356D 0.24 tolerated(0.12) benign(0.007) TCGA-BR-7704-01 2 219029005 219029005 T G CXCR1 Missense_Mutation p.Q310H 0.25 deleterious(0.03) benign(0.052) TCGA-BR-7704-01 2 223158874 223158874 G C PAX3 Intron 0.20 TCGA-BR-7704-01 2 230633988 230633988 C T TRIP12 Silent p.L1879L 0.42 TCGA-BR-7704-01 2 232393579 232393579 G A NMUR1 Silent p.Y51Y 0.21 TCGA-BR-7704-01 2 233345443 233345445 GAA - ECEL1 In_Frame_Del p.F712del 0.11 TCGA-BR-7704-01 2 233635805 233635805 C T KCNJ13 Missense_Mutation p.D90N 0.12 tolerated(0.2) benign(0.299) TCGA-BR-7704-01 2 238285459 238285459 A C COL6A3 Missense_Mutation p.I1009R 0.11 probably_damaging(0.996) TCGA-BR-7704-01 2 242181946 242181946 C T HDLBP Missense_Mutation p.V700I 0.35 tolerated(0.07) possibly_damaging(0.895) TCGA-BR-7704-01 2 242815067 242815067 G A CXXC11 Missense_Mutation p.D454N 0.47 tolerated(0.47) benign(0.001) TCGA-BR-7704-01 2 27446503 27446503 C T CAD Silent p.N294N 0.19 TCGA-BR-7704-01 2 27597994 27597994 C A SNX17 Missense_Mutation p.L250M 0.56 deleterious(0.01) possibly_damaging(0.883) TCGA-BR-7704-01 2 40656585 40656585 T C SLC8A1 Missense_Mutation p.E279G 0.22 deleterious(0.02) possibly_damaging(0.758) TCGA-BR-7704-01 2 48602449 48602449 A G FOXN2 Missense_Mutation p.Q388R 0.59 deleterious(0.04) benign(0.001) TCGA-BR-7704-01 2 48915788 48915788 A C LHCGR Missense_Mutation p.V383G 0.21 deleterious(0) probably_damaging(0.944) TCGA-BR-7704-01 2 51255005 51255005 T G NRXN1 Missense_Mutation p.K136T 0.26 tolerated(0.2) benign(0.135) TCGA-BR-7704-01 2 68691388 68691388 C A FBXO48 Missense_Mutation p.D141Y 0.38 deleterious(0) probably_damaging(0.978) TCGA-BR-7704-01 2 68691466 68691466 T C FBXO48 Missense_Mutation p.K115E 0.36 deleterious(0.02) possibly_damaging(0.7) TCGA-BR-7704-01 2 71368364 71368364 T G MPHOSPH10 Silent p.A437A 0.21 TCGA-BR-7704-01 2 71901407 71901407 C T DYSF Silent p.F1955F 0.26 TCGA-BR-7704-01 2 86361965 86361965 C T PTCD3 Nonsense_Mutation p.Q545* 0.43 TCGA-BR-7704-01 2 90458646 90458646 T G CH17-132F21.1 Missense_Mutation p.C108G 0.09 TCGA-BR-7704-01 3 112063822 112063822 C G CD200 Silent p.T61T 0.27 TCGA-BR-7704-01 3 113858501 113858501 A T DRD3 Missense_Mutation p.I190N 0.13 deleterious(0) possibly_damaging(0.82) TCGA-BR-7704-01 3 122420095 122420095 G C PARP14 Missense_Mutation p.R898S 0.28 deleterious(0) benign(0.137) TCGA-BR-7704-01 3 1339586 1339586 A T CNTN6 Missense_Mutation p.E224D 0.30 deleterious(0.01) possibly_damaging(0.898) TCGA-BR-7704-01 3 170110195 170110195 C G SKIL Missense_Mutation p.A682G 0.61 tolerated_low_confidence(0.78) benign(0.001) TCGA-BR-7704-01 3 173998882 173998882 T G NLGN1 Missense_Mutation p.L754R 0.65 deleterious_low_confidence(0.02) probably_damaging(0.996) TCGA-BR-7704-01 3 183602604 183602604 A G PARL Missense_Mutation p.W11R 0.36 tolerated_low_confidence(0.06) benign(0.01) TCGA-BR-7704-01 3 185655651 185655651 C A TRA2B 5'UTR 0.63 TCGA-BR-7704-01 3 196434546 196434546 A C CEP19 Missense_Mutation p.L127R 0.22 tolerated(0.15) probably_damaging(0.972) TCGA-BR-7704-01 3 25611286 25611286 T G RARB Silent p.T162T 0.38 TCGA-BR-7704-01 3 27759208 27759208 C T EOMES Missense_Mutation p.V472I 0.61 tolerated(0.25) benign(0.337) TCGA-BR-7704-01 3 44672628 44672628 A T ZNF197 Silent p.V155V 0.64 TCGA-BR-7704-01 3 45942859 45942859 C T CCR9 Silent p.S193S 0.55 TCGA-BR-7704-01 3 50211510 50211510 G A SEMA3F Missense_Mutation p.R100H 0.65 tolerated(0.09) possibly_damaging(0.477) TCGA-BR-7704-01 3 52434400 52434400 C T DNAH1 Missense_Mutation p.H4246Y 0.25 benign(0.028) TCGA-BR-7704-01 3 85932479 85932479 T A CADM2 Missense_Mutation p.W86R 0.51 tolerated(0.08) benign(0.356) TCGA-BR-7704-01 3 9517681 9517681 A G SETD5 Missense_Mutation p.Q1412R 0.24 deleterious(0.03) probably_damaging(0.979) TCGA-BR-7704-01 4 100756882 100756882 G C DAPP1 Silent p.G68G 0.48 TCGA-BR-7704-01 4 10446276 10446276 G C ZNF518B Silent p.V559V 0.72 TCGA-BR-7704-01 4 146575206 146575206 G A MMAA Missense_Mutation p.D294N 0.26 deleterious(0) probably_damaging(0.987) TCGA-BR-7704-01 4 158057967 158057967 C T GLRB Missense_Mutation p.T180I 0.19 tolerated(0.4) possibly_damaging(0.874) TCGA-BR-7704-01 4 162508606 162508606 C T FSTL5 Splice_Site p.X339_splice 0.31 TCGA-BR-7704-01 4 175220298 175220298 G A CEP44 Missense_Mutation p.S9N 0.54 tolerated(0.24) possibly_damaging(0.816) TCGA-BR-7704-01 4 657980 657980 C T PDE6B Missense_Mutation p.S700F 0.67 deleterious(0.01) probably_damaging(0.997) TCGA-BR-7704-01 4 70156402 70156402 T A UGT2B28 Missense_Mutation p.L395M 0.35 tolerated(0.5) benign(0.325) TCGA-BR-7704-01 4 72319339 72319339 G A SLC4A4 Missense_Mutation p.A484T 0.30 deleterious(0.05) probably_damaging(0.998) TCGA-BR-7704-01 4 73185183 73185183 C A ADAMTS3 Missense_Mutation p.M406I 0.24 deleterious(0.01) probably_damaging(0.934) TCGA-BR-7704-01 4 7640122 7640122 C A SORCS2 Missense_Mutation p.A239D 0.13 deleterious(0) possibly_damaging(0.756) TCGA-BR-7704-01 4 8620178 8620178 T C CPZ Missense_Mutation p.V509A 0.61 deleterious(0) benign(0.314) TCGA-BR-7704-01 5 10250479 10250479 C T CCT5 Silent p.F9F 0.34 TCGA-BR-7704-01 5 112174602 112174602 C A APC Nonsense_Mutation p.S1104* 0.64 TCGA-BR-7704-01 5 112174736 112174738 GAA - APC In_Frame_Del p.E1151del 0.40 TCGA-BR-7704-01 5 123983911 123983911 G T ZNF608 Missense_Mutation p.N722K 0.32 tolerated(0.1) benign(0.202) TCGA-BR-7704-01 5 131822029 131822029 T A IRF1 Missense_Mutation p.D194V 0.30 deleterious(0) benign(0.194) TCGA-BR-7704-01 5 132197742 132197742 C G GDF9 Missense_Mutation p.V302L 0.73 tolerated(0.41) benign(0.002) TCGA-BR-7704-01 5 141243652 141243652 G T PCDH1 Silent p.V748V 0.72 TCGA-BR-7704-01 5 167545399 167545399 A T TENM2 Missense_Mutation p.Q639L 0.61 deleterious(0) possibly_damaging(0.597) TCGA-BR-7704-01 5 176016370 176016370 C A CDHR2 Nonsense_Mutation p.Y1016* 0.25 TCGA-BR-7704-01 5 176815366 176815366 C A SLC34A1 Missense_Mutation p.S310Y 0.37 deleterious(0.02) benign(0.006) TCGA-BR-7704-01 5 176919612 176919612 C T PDLIM7 Missense_Mutation p.G55S 0.68 deleterious(0) probably_damaging(0.989) TCGA-BR-7704-01 5 179663398 179663398 C T MAPK9 Missense_Mutation p.E421K 0.29 tolerated_low_confidence(0.1) benign(0.103) TCGA-BR-7704-01 5 23509701 23509701 A T PRDM9 Silent p.I64I 0.39 TCGA-BR-7704-01 5 35857145 35857145 T A IL7R Missense_Mutation p.S22R 0.34 deleterious(0) probably_damaging(0.982) TCGA-BR-7704-01 5 39285204 39285204 G A C9 3'UTR 0.17 TCGA-BR-7704-01 5 41149516 41149516 T G C6 Missense_Mutation p.K817T 0.36 tolerated(0.4) benign(0.026) TCGA-BR-7704-01 5 50685698 50685698 C T ISL1 Missense_Mutation p.R233W 0.06 deleterious(0) probably_damaging(0.999) TCGA-BR-7704-01 5 54968437 54968437 C G SLC38A9 Missense_Mutation p.R67T 0.57 deleterious(0) probably_damaging(0.999) TCGA-BR-7704-01 5 80381675 80381675 C T RASGRF2 Missense_Mutation p.H406Y 0.55 deleterious(0) probably_damaging(0.999) TCGA-BR-7704-01 5 89948276 89948276 A C GPR98 Missense_Mutation p.N1177T 0.69 benign(0.002) TCGA-BR-7704-01 5 90074683 90074683 T G GPR98 Missense_Mutation p.V4284G 0.51 possibly_damaging(0.908) TCGA-BR-7704-01 6 114274551 114274551 C T HDAC2 Missense_Mutation p.D177N 0.39 deleterious(0) probably_damaging(0.995) TCGA-BR-7704-01 6 116599805 116599805 T A TSPYL1 Nonsense_Mutation p.K397* 0.25 TCGA-BR-7704-01 6 117013488 117013488 G A KPNA5 Missense_Mutation p.M91I 0.08 tolerated(0.07) benign(0.012) TCGA-BR-7704-01 6 11723593 11723593 T G ADTRP Missense_Mutation p.H234P 0.16 deleterious(0.01) possibly_damaging(0.847) TCGA-BR-7704-01 6 12121047 12121047 C G HIVEP1 Missense_Mutation p.S340C 0.21 deleterious(0.01) probably_damaging(0.927) TCGA-BR-7704-01 6 126249876 126249876 G C NCOA7 Missense_Mutation p.D930H 0.23 deleterious(0) probably_damaging(1) TCGA-BR-7704-01 6 129781441 129781441 G A LAMA2 Missense_Mutation p.E2322K 0.39 deleterious(0.03) benign(0.049) TCGA-BR-7704-01 6 129921797 129921797 A C ARHGAP18 Missense_Mutation p.L521R 0.15 deleterious(0) benign(0.041) TCGA-BR-7704-01 6 13321205 13321205 C A TBC1D7 Nonsense_Mutation p.E106* 0.23 TCGA-BR-7704-01 6 143800222 143800222 T G PEX3 Missense_Mutation p.F276L 0.18 tolerated(0.18) benign(0.186) TCGA-BR-7704-01 6 149700628 149700628 G A TAB2 Missense_Mutation p.G526E 0.08 deleterious(0) probably_damaging(0.999) TCGA-BR-7704-01 6 149922727 149922729 CAC - KATNA1 Splice_Site p.X296_splice 0.21 TCGA-BR-7704-01 6 154412482 154412482 C A OPRM1 Silent p.R440R 0.19 TCGA-BR-7704-01 6 155154200 155154200 G T SCAF8 Missense_Mutation p.D1163Y 0.16 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BR-7704-01 6 158484821 158484821 A C SYNJ2 Splice_Site p.X376_splice 0.48 TCGA-BR-7704-01 6 160329052 160329052 A G MAS1 3'UTR 0.09 TCGA-BR-7704-01 6 160453727 160453727 C T IGF2R Missense_Mutation p.P343S 0.20 deleterious(0.05) probably_damaging(0.968) TCGA-BR-7704-01 6 160863900 160863900 C T SLC22A3 Nonsense_Mutation p.R466* 0.20 TCGA-BR-7704-01 6 165956946 165956946 T C PDE10A Missense_Mutation p.K60E 0.46 deleterious(0.01) benign(0.194) TCGA-BR-7704-01 6 166836802 166836802 C T RPS6KA2 Missense_Mutation p.R570H 0.37 deleterious(0) possibly_damaging(0.535) TCGA-BR-7704-01 6 18197432 18197432 G A KDM1B Missense_Mutation p.D240N 0.27 tolerated_low_confidence(0.21) unknown(0) TCGA-BR-7704-01 6 25762200 25762200 G A SLC17A4 Missense_Mutation p.G4R 0.23 tolerated(0.53) benign(0.001) TCGA-BR-7704-01 6 25913642 25913642 G C SLC17A2 Missense_Mutation p.L398V 0.37 tolerated(0.2) possibly_damaging(0.801) TCGA-BR-7704-01 6 26508302 26508302 T A BTN1A1 Silent p.A298A 0.23 TCGA-BR-7704-01 6 30029766 30029766 A C ZNRD1 Missense_Mutation p.E73A 0.22 tolerated(0.21) benign(0.015) TCGA-BR-7704-01 6 31935513 31935513 A C SKIV2L Silent p.R869R 0.20 TCGA-BR-7704-01 6 32006979 32006979 A T CYP21A2 Missense_Mutation p.D134V 0.14 tolerated(0.11) benign(0.281) TCGA-BR-7704-01 6 32017337 32017337 G T TNXB 5'Flank 0.26 TCGA-BR-7704-01 6 32159994 32159994 G A GPSM3 Missense_Mutation p.P26S 0.25 deleterious_low_confidence(0.04) unknown(0) TCGA-BR-7704-01 6 32811789 32811789 A G PSMB8 5'UTR 0.20 TCGA-BR-7704-01 6 32942489 32942489 C T BRD2 Nonsense_Mutation p.Q94* 0.20 TCGA-BR-7704-01 6 35248978 35248978 C G ZNF76 Missense_Mutation p.A17G 0.04 deleterious(0) possibly_damaging(0.823) TCGA-BR-7704-01 6 43098135 43098135 A G PTK7 Missense_Mutation p.Q221R 0.25 tolerated(0.37) benign(0.002) TCGA-BR-7704-01 6 6626652 6626652 G A LY86 Missense_Mutation p.G117E 0.38 deleterious(0) probably_damaging(1) TCGA-BR-7704-01 6 70935702 70935702 T A COL9A1 Silent p.G838G 0.22 TCGA-BR-7704-01 6 87725329 87725329 T C HTR1E Missense_Mutation p.F93L 0.43 tolerated(0.05) benign(0.026) TCGA-BR-7704-01 6 90418231 90418231 C A MDN1 Nonsense_Mutation p.E2628* 0.25 TCGA-BR-7704-01 6 96997371 96997371 G A UFL1 Missense_Mutation p.R535H 0.48 tolerated(0.07) benign(0.005) TCGA-BR-7704-01 7 100685361 100685361 G A MUC17 Missense_Mutation p.S3555N 0.23 benign(0.168) TCGA-BR-7704-01 7 107330610 107330610 C G SLC26A4 Missense_Mutation p.F397L 0.46 tolerated(0.36) benign(0.002) TCGA-BR-7704-01 7 114066563 114066563 A T FOXP2 5'UTR 0.10 TCGA-BR-7704-01 7 128454794 128454794 C G CCDC136 Missense_Mutation p.Q956E 0.23 tolerated(0.09) probably_damaging(0.998) TCGA-BR-7704-01 7 131825391 131825391 T G PLXNA4 Missense_Mutation p.K1802T 0.25 deleterious(0) probably_damaging(0.999) TCGA-BR-7704-01 7 142609646 142609646 A G TRPV5 Splice_Site p.X596_splice 0.34 TCGA-BR-7704-01 7 156963091 156963091 T A UBE3C Missense_Mutation p.L97M 0.33 tolerated(0.12) possibly_damaging(0.77) TCGA-BR-7704-01 7 20682932 20682932 T G ABCB5 Missense_Mutation p.V147G 0.10 deleterious(0) possibly_damaging(0.857) TCGA-BR-7704-01 7 42005023 42005023 G A GLI3 Silent p.L1216L 0.26 TCGA-BR-7704-01 7 57529418 57529421 TAAC - ZNF716 Frame_Shift_Del p.N418Afs*10 0.18 TCGA-BR-7704-01 7 82451955 82451955 T A PCLO Nonsense_Mutation p.K4883* 0.23 TCGA-BR-7704-01 7 82544574 82544574 A C PCLO Missense_Mutation p.F4243C 0.50 unknown(0) TCGA-BR-7704-01 7 82545563 82545563 A G PCLO Silent p.T3913T 0.26 TCGA-BR-7704-01 7 84666269 84666269 T C SEMA3D Missense_Mutation p.K376R 0.26 tolerated(0.42) probably_damaging(0.999) TCGA-BR-7704-01 7 84751064 84751064 G T SEMA3D Silent p.T48T 0.17 TCGA-BR-7704-01 7 87280192 87280192 T G RUNDC3B Silent p.S59S 0.47 TCGA-BR-7704-01 7 89749029 89749029 G A RP5-1121E10.2 Intron 0.21 TCGA-BR-7704-01 7 91863882 91863882 A G KRIT1 Silent p.F290F 0.16 TCGA-BR-7704-01 7 94054940 94054940 G A COL1A2 Missense_Mutation p.G934S 0.13 unknown(0) TCGA-BR-7704-01 7 97821315 97821315 C T LMTK2 Missense_Mutation p.S513L 0.15 tolerated(0.08) possibly_damaging(0.449) TCGA-BR-7704-01 7 98567766 98567766 C G TRRAP Missense_Mutation p.P2508R 0.16 benign(0.007) TCGA-BR-7704-01 8 108334272 108334272 T C ANGPT1 Silent p.Q220Q 0.15 TCGA-BR-7704-01 8 11142565 11142565 C G MTMR9 Missense_Mutation p.D56E 0.14 deleterious(0.03) probably_damaging(0.971) TCGA-BR-7704-01 8 121551190 121551190 C A SNTB1 Missense_Mutation p.C515F 0.25 deleterious(0) probably_damaging(0.984) TCGA-BR-7704-01 8 133142094 133142094 G A KCNQ3 Silent p.S678S 0.16 TCGA-BR-7704-01 8 133492407 133492407 A T KCNQ3 Missense_Mutation p.Y125N 0.44 deleterious(0.02) benign(0.057) TCGA-BR-7704-01 8 133895189 133895189 C T TG Silent p.D340D 0.46 TCGA-BR-7704-01 8 139189620 139189620 T G FAM135B Missense_Mutation p.K358T 0.16 deleterious(0) possibly_damaging(0.71) TCGA-BR-7704-01 8 141771262 141771262 A G PTK2 Splice_Site p.X444_splice 0.24 TCGA-BR-7704-01 8 16026026 16026026 G A MSR1 Nonsense_Mutation p.Q191* 0.23 TCGA-BR-7704-01 8 16026126 16026126 C A MSR1 Silent p.L157L 0.25 TCGA-BR-7704-01 8 21844747 21844747 G A XPO7 Missense_Mutation p.R558H 0.04 deleterious(0) probably_damaging(0.991) TCGA-BR-7704-01 8 31007876 31007876 G T WRN Missense_Mutation p.V1198L 0.21 tolerated(0.88) benign(0.01) TCGA-BR-7704-01 8 32453467 32453467 G A NRG1 Silent p.G74G 0.43 TCGA-BR-7704-01 8 35584038 35584038 C G UNC5D Missense_Mutation p.P558A 0.50 deleterious(0.03) probably_damaging(1) TCGA-BR-7704-01 8 67577683 67577683 G A VCPIP1 Missense_Mutation p.T504I 0.25 deleterious(0.03) benign(0.008) TCGA-BR-7704-01 8 68981299 68981299 G T PREX2 Missense_Mutation p.Q457H 0.40 tolerated(0.13) benign(0.001) TCGA-BR-7704-01 8 71068598 71068598 A T NCOA2 Missense_Mutation p.S668T 0.44 tolerated(0.41) possibly_damaging(0.706) TCGA-BR-7704-01 8 77616667 77616667 A G ZFHX4 Missense_Mutation p.E115G 0.26 possibly_damaging(0.607) TCGA-BR-7704-01 9 101784383 101784383 G C COL15A1 Missense_Mutation p.G571A 0.17 tolerated(0.17) benign(0.018) TCGA-BR-7704-01 9 104432369 104432369 T G GRIN3A Missense_Mutation p.E775D 0.47 tolerated(0.17) probably_damaging(0.999) TCGA-BR-7704-01 9 107289434 107289434 A C OR13C4 Silent p.G19G 0.43 TCGA-BR-7704-01 9 113212395 113212395 A C SVEP1 Missense_Mutation p.C1349W 0.23 probably_damaging(1) TCGA-BR-7704-01 9 128268643 128268643 C A MAPKAP1 Missense_Mutation p.D338Y 0.29 deleterious(0) possibly_damaging(0.797) TCGA-BR-7704-01 9 134501456 134501456 C T RAPGEF1 Missense_Mutation p.V520I 0.31 tolerated(0.67) benign(0.001) TCGA-BR-7704-01 9 136310934 136310934 G A ADAMTS13 Missense_Mutation p.G909R 0.50 deleterious(0) probably_damaging(0.989) TCGA-BR-7704-01 9 73457939 73457939 C G TRPM3 Missense_Mutation p.E261Q 0.17 tolerated(0.15) probably_damaging(0.997) TCGA-BR-7704-01 9 79985399 79985399 G C VPS13A Missense_Mutation p.D2938H 0.49 deleterious(0) probably_damaging(1) TCGA-BR-7704-01 9 79985400 79985400 A T VPS13A Missense_Mutation p.D2938V 0.49 deleterious(0) probably_damaging(1) TCGA-BR-7704-01 9 86506355 86506355 A C KIF27 Missense_Mutation p.L555R 0.45 deleterious(0.03) benign(0.031) TCGA-BR-7704-01 X 100656666 100656666 T C GLA Silent p.L167L 0.08 TCGA-BR-7704-01 X 101396123 101396123 C T TCEAL6 Missense_Mutation p.E61K 0.07 tolerated(0.49) benign(0.059) TCGA-BR-7704-01 X 117526603 117526603 A G WDR44 Silent p.E65E 0.41 TCGA-BR-7704-01 X 119005814 119005814 G A NDUFA1 5'UTR 0.46 TCGA-BR-7704-01 X 129545434 129545434 G A RBMX2 Missense_Mutation p.R139H 0.36 tolerated(0.53) benign(0.001) TCGA-BR-7704-01 X 130408803 130408803 T A IGSF1 Missense_Mutation p.K1179M 0.36 deleterious(0.03) possibly_damaging(0.89) TCGA-BR-7704-01 X 130416654 130416654 T G IGSF1 Missense_Mutation p.Q337P 0.31 deleterious(0.03) probably_damaging(0.998) TCGA-BR-7704-01 X 134426356 134426356 C T ZNF75D Missense_Mutation p.G152E 0.22 tolerated(1) benign(0.129) TCGA-BR-7704-01 X 134993908 134993908 G C SAGE1 Missense_Mutation p.D773H 0.37 deleterious(0) probably_damaging(0.982) TCGA-BR-7704-01 X 138633258 138633258 T G F9 Silent p.T186T 0.36 TCGA-BR-7704-01 X 139038893 139038893 T G CXorf66 Missense_Mutation p.K83T 0.24 deleterious(0) possibly_damaging(0.859) TCGA-BR-7704-01 X 139586756 139586756 A G SOX3 Missense_Mutation p.M157T 0.33 deleterious(0) probably_damaging(0.929) TCGA-BR-7704-01 X 140996141 140996141 C A MAGEC1 Missense_Mutation p.S984Y 0.17 tolerated(0.37) unknown(0) TCGA-BR-7704-01 X 149013559 149013559 A C MAGEA8 Missense_Mutation p.E171D 0.30 deleterious(0.03) benign(0.096) TCGA-BR-7704-01 X 151127121 151127121 T G GABRE Intron 0.45 TCGA-BR-7704-01 X 151935504 151935504 G C MAGEA3 Missense_Mutation p.I221M 0.39 tolerated(0.09) benign(0.415) TCGA-BR-7704-01 X 153670030 153670030 G C GDI1 Missense_Mutation p.A294P 0.18 deleterious(0.01) benign(0.128) TCGA-BR-7704-01 X 153699945 153699945 C T PLXNA3 Silent p.N1828N 0.32 TCGA-BR-7704-01 X 154002965 154002965 A G DKC1 Missense_Mutation p.E415G 0.29 tolerated(0.35) benign(0.001) TCGA-BR-7704-01 X 17024429 17024429 A T REPS2 Missense_Mutation p.Q120L 0.16 deleterious(0) probably_damaging(0.999) TCGA-BR-7704-01 X 17818669 17818669 T A RAI2 Missense_Mutation p.M488L 0.06 tolerated(0.36) unknown(0) TCGA-BR-7704-01 X 17818670 17818670 G T RAI2 Silent p.S487S 0.06 TCGA-BR-7704-01 X 19587262 19587262 C G SH3KBP1 Missense_Mutation p.G448A 0.31 tolerated(0.4) benign(0.026) TCGA-BR-7704-01 X 32381009 32381009 A G DMD Silent p.L1741L 0.40 TCGA-BR-7704-01 X 34148104 34148104 A C FAM47A Silent p.T764T 0.36 TCGA-BR-7704-01 X 47775984 47775984 T - ZNF81 Frame_Shift_Del p.F647Sfs*22 0.28 TCGA-BR-7704-01 X 51150232 51150232 G A CXorf67 Missense_Mutation p.A122T 0.22 tolerated(0.43) benign(0.028) TCGA-BR-7704-01 X 51151081 51151081 C T CXorf67 Missense_Mutation p.R405C 0.34 deleterious(0) probably_damaging(0.994) TCGA-BR-7704-01 X 53561132 53561132 A C HUWE1 Silent p.R4286R 0.17 TCGA-BR-7704-01 X 66941796 66941796 T C AR Missense_Mutation p.F814L 0.22 tolerated(0.54) benign(0.245) TCGA-BR-7704-01 X 70149577 70149577 C G SLC7A3 Missense_Mutation p.V91L 0.33 deleterious(0) probably_damaging(0.957) TCGA-BR-7704-01 X 70621512 70621512 A T TAF1 Silent p.T1327T 0.19 TCGA-BR-7704-01 X 70836601 70836601 C T CXCR3 Missense_Mutation p.V288M 0.24 tolerated(0.06) probably_damaging(0.921) TCGA-BR-7704-01 X 72433470 72433470 G C NAP1L2 Missense_Mutation p.L287V 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-BR-7704-01 X 76888866 76888866 C T ATRX Missense_Mutation p.E1655K 0.37 probably_damaging(0.999) TCGA-BR-7704-01 X 77284767 77284767 C T ATP7A Silent p.S979S 0.17 TCGA-BR-7704-01 X 78010580 78010580 A C LPAR4 Missense_Mutation p.S72R 0.24 deleterious(0) possibly_damaging(0.491) TCGA-BR-7704-01 X 79282369 79282369 T A TBX22 Splice_Site p.X266_splice 0.16 TCGA-BR-7704-01 X 83359576 83359576 G A RPS6KA6 Silent p.F515F 0.35 TCGA-BR-7704-01 X 85119686 85119686 C A CHM Missense_Mutation p.E637D 0.10 tolerated(0.13) probably_damaging(0.984) TCGA-BR-7704-01 X 91137918 91137918 A T PCDH11X Intron 0.32 TCGA-BR-7707-01 10 101473056 101473056 A G COX15 3'Flank 0.15 TCGA-BR-7707-01 10 101591751 101591751 G T ABCC2 Missense_Mutation p.A1041S 0.09 tolerated(0.87) benign(0.192) TCGA-BR-7707-01 10 102676365 102676365 A G FAM178A Missense_Mutation p.K75E 0.08 deleterious(0) possibly_damaging(0.547) TCGA-BR-7707-01 10 102822357 102822357 C T KAZALD1 Missense_Mutation p.P3L 0.25 deleterious_low_confidence(0.01) unknown(0) TCGA-BR-7707-01 10 104592406 104592406 T C CYP17A1 Missense_Mutation p.Q334R 0.15 tolerated(0.2) benign(0.076) TCGA-BR-7707-01 10 105795035 105795035 G A COL17A1 Missense_Mutation p.S1202L 0.24 possibly_damaging(0.844) TCGA-BR-7707-01 10 106166475 106166475 T C CCDC147 Missense_Mutation p.I727T 0.05 deleterious(0) probably_damaging(0.991) TCGA-BR-7707-01 10 1070565 1070565 G T IDI2 Silent p.A33A 0.34 TCGA-BR-7707-01 10 111624956 111624956 A T XPNPEP1 Missense_Mutation p.S663T 0.11 tolerated(0.18) benign(0.005) TCGA-BR-7707-01 10 112361628 112361628 C T SMC3 Silent p.L960L 0.05 TCGA-BR-7707-01 10 118196325 118196325 A C PNLIPRP3 Missense_Mutation p.K51T 0.11 tolerated(0.13) benign(0.083) TCGA-BR-7707-01 10 119303110 119303110 C A EMX2 Nonsense_Mutation p.S111* 0.05 TCGA-BR-7707-01 10 125516743 125516743 C T CPXM2 Missense_Mutation p.V635M 0.27 deleterious(0.03) probably_damaging(0.999) TCGA-BR-7707-01 10 126186604 126186604 G T LHPP Splice_Site p.X178_splice 0.33 TCGA-BR-7707-01 10 127462511 127462511 G A MMP21 Missense_Mutation p.R196C 0.28 tolerated(0.1) possibly_damaging(0.806) TCGA-BR-7707-01 10 128076637 128076637 G A ADAM12 Silent p.C26C 0.32 TCGA-BR-7707-01 10 129245732 129245732 G A DOCK1 Missense_Mutation p.A1809T 0.19 tolerated(0.21) benign(0.007) TCGA-BR-7707-01 10 129897443 129897443 C T MKI67 3'UTR 0.24 TCGA-BR-7707-01 10 131636188 131636188 G A EBF3 3'UTR 0.08 TCGA-BR-7707-01 10 134218254 134218255 - C PWWP2B Frame_Shift_Ins p.P87Sfs*93 0.25 TCGA-BR-7707-01 10 134219544 134219544 G A PWWP2B Missense_Mutation p.G514S 0.29 tolerated(1) benign(0.008) TCGA-BR-7707-01 10 135015215 135015215 C T KNDC1 Missense_Mutation p.T1067I 0.24 tolerated(0.26) benign(0.007) TCGA-BR-7707-01 10 15175100 15175100 T C NMT2 Missense_Mutation p.D185G 0.10 deleterious(0) possibly_damaging(0.907) TCGA-BR-7707-01 10 17146585 17146585 A C CUBN Missense_Mutation p.F417C 0.12 tolerated(0.06) possibly_damaging(0.866) TCGA-BR-7707-01 10 17363172 17363172 G A ST8SIA6 Missense_Mutation p.P301L 0.06 deleterious(0) probably_damaging(1) TCGA-BR-7707-01 10 18828510 18828510 C T CACNB2 Nonsense_Mutation p.R614* 0.15 TCGA-BR-7707-01 10 20465998 20465998 G A PLXDC2 Silent p.S318S 0.26 TCGA-BR-7707-01 10 22880634 22880634 T C PIP4K2A Missense_Mutation p.D139G 0.06 deleterious(0) possibly_damaging(0.861) TCGA-BR-7707-01 10 23319585 23319585 A G ARMC3 Silent p.V702V 0.06 TCGA-BR-7707-01 10 24669902 24669902 G - KIAA1217 Frame_Shift_Del p.D155Mfs*19 0.23 TCGA-BR-7707-01 10 24832416 24832416 A - KIAA1217 Frame_Shift_Del p.K1407Rfs*16 0.10 TCGA-BR-7707-01 10 24832970 24832970 A G KIAA1217 Missense_Mutation p.T1591A 0.27 deleterious(0.04) possibly_damaging(0.79) TCGA-BR-7707-01 10 24835181 24835181 C T KIAA1217 Silent p.S1920S 0.07 TCGA-BR-7707-01 10 26455050 26455050 C A MYO3A Silent p.T1018T 0.12 TCGA-BR-7707-01 10 29762771 29762772 - C SVIL Frame_Shift_Ins p.A1842Gfs*39 0.25 TCGA-BR-7707-01 10 38121220 38121220 T C ZNF248 Missense_Mutation p.N355D 0.05 deleterious(0.02) benign(0.053) TCGA-BR-7707-01 10 38406985 38406985 T C ZNF37A Silent p.H302H 0.10 TCGA-BR-7707-01 10 395273 395273 G - DIP2C Frame_Shift_Del p.P1036Qfs*3 0.13 TCGA-BR-7707-01 10 50946001 50946001 G A OGDHL Missense_Mutation p.R837C 0.28 deleterious(0) probably_damaging(0.998) TCGA-BR-7707-01 10 51769465 51769465 A G AGAP6 Missense_Mutation p.E527G 0.13 tolerated(0.09) benign(0.267) TCGA-BR-7707-01 10 54074807 54074807 G A DKK1 Missense_Mutation p.R123H 0.28 deleterious(0) probably_damaging(1) TCGA-BR-7707-01 10 5948257 5948257 C T FBXO18 Missense_Mutation p.R190W 0.27 deleterious(0.01) possibly_damaging(0.663) TCGA-BR-7707-01 10 61412656 61412656 G A SLC16A9 Silent p.G468G 0.07 TCGA-BR-7707-01 10 61846435 61846435 C A ANK3 Missense_Mutation p.G1250W 0.11 probably_damaging(0.998) TCGA-BR-7707-01 10 70426987 70426987 C T TET1 Silent p.T1549T 0.17 TCGA-BR-7707-01 10 70450635 70450635 A G TET1 Silent p.S1825S 0.09 TCGA-BR-7707-01 10 70696828 70696828 C T DDX50 Nonsense_Mutation p.R578* 0.20 TCGA-BR-7707-01 10 70968476 70968476 G T SUPV3L1 Silent p.T682T 0.15 TCGA-BR-7707-01 10 72630885 72630885 T C SGPL1 Silent p.P297P 0.33 TCGA-BR-7707-01 10 73567408 73567408 G A CDH23 Missense_Mutation p.R575H 0.17 tolerated(0.13) benign(0.003) TCGA-BR-7707-01 10 74658557 74658557 C T OIT3 Missense_Mutation p.A66V 0.30 deleterious(0) probably_damaging(0.931) TCGA-BR-7707-01 10 75620588 75620588 C T CAMK2G Missense_Mutation p.V74M 0.09 deleterious_low_confidence(0) possibly_damaging(0.863) TCGA-BR-7707-01 10 81051995 81051995 C T ZMIZ1 Missense_Mutation p.A280V 0.07 benign(0.284) TCGA-BR-7707-01 10 81060696 81060696 C T ZMIZ1 Silent p.C672C 0.07 TCGA-BR-7707-01 10 85973974 85973974 G A CDHR1 Missense_Mutation p.R726H 0.34 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-BR-7707-01 10 890939 890939 T - LARP4B Frame_Shift_Del p.T163Hfs*47 0.30 TCGA-BR-7707-01 10 89487166 89487166 G A PAPSS2 Missense_Mutation p.A336T 0.35 tolerated(0.06) benign(0) TCGA-BR-7707-01 10 90966256 90966256 C T CH25H Missense_Mutation p.R265Q 0.25 tolerated(0.48) benign(0.003) TCGA-BR-7707-01 10 91177661 91177661 A G IFIT5 Silent p.E235E 0.31 TCGA-BR-7707-01 10 92502258 92502258 T - HTR7 Frame_Shift_Del p.K474Rfs*3 0.14 TCGA-BR-7707-01 10 93773716 93773718 AAG - BTAF1 In_Frame_Del p.E1506del 0.12 TCGA-BR-7707-01 10 95157162 95157162 C T MYOF Missense_Mutation p.V425I 0.33 tolerated(0.81) benign(0.004) TCGA-BR-7707-01 10 96967067 96967067 C - C10orf129 Frame_Shift_Del p.P170Qfs*3 0.19 TCGA-BR-7707-01 10 97402812 97402812 G A ALDH18A1 Silent p.A80A 0.35 TCGA-BR-7707-01 10 97817760 97817760 C T CCNJ Missense_Mutation p.T305M 0.06 tolerated(0.28) benign(0.213) TCGA-BR-7707-01 10 98319424 98319425 - A TM9SF3 Frame_Shift_Ins p.Q218Sfs*40 0.20 TCGA-BR-7707-01 10 98336438 98336438 A C TM9SF3 Missense_Mutation p.L84R 0.06 deleterious(0) probably_damaging(0.999) TCGA-BR-7707-01 10 98766417 98766417 A G SLIT1 Silent p.T1134T 0.12 TCGA-BR-7707-01 10 99677300 99677300 C T CRTAC1 Silent p.A224A 0.33 TCGA-BR-7707-01 11 1026404 1026404 G A MUC6 Silent p.P823P 0.18 TCGA-BR-7707-01 11 102742539 102742539 C T MMP12 RNA 0.33 TCGA-BR-7707-01 11 107219755 107219755 G A CWF19L2 Missense_Mutation p.R704W 0.25 deleterious(0.02) possibly_damaging(0.773) TCGA-BR-7707-01 11 107959318 107959318 T C CUL5 Silent p.L415L 0.12 TCGA-BR-7707-01 11 108201105 108201105 G T ATM Missense_Mutation p.W2491L 0.25 deleterious(0) possibly_damaging(0.795) TCGA-BR-7707-01 11 10824639 10824639 G A EIF4G2 Missense_Mutation p.R312C 0.19 deleterious(0) possibly_damaging(0.852) TCGA-BR-7707-01 11 1095795 1095795 C T MUC2 Silent p.R2102R 0.37 TCGA-BR-7707-01 11 111796804 111796804 A C C11orf52 Missense_Mutation p.S85R 0.19 tolerated(0.1) benign(0.323) TCGA-BR-7707-01 11 111866190 111866190 G A DIXDC1 Missense_Mutation p.D530N 0.31 tolerated(0.06) probably_damaging(0.999) TCGA-BR-7707-01 11 111953288 111953289 - A C11orf57 Frame_Shift_Ins p.Q162Afs*26 0.32 TCGA-BR-7707-01 11 113639659 113639659 A G ZW10 Missense_Mutation p.Y46H 0.06 deleterious(0) probably_damaging(1) TCGA-BR-7707-01 11 117049952 117049952 C T SIDT2 5'UTR 0.43 TCGA-BR-7707-01 11 117105026 117105026 C - RNF214 Frame_Shift_Del p.S15Vfs*21 0.19 TCGA-BR-7707-01 11 118252213 118252213 A G UBE4A Missense_Mutation p.T669A 0.08 tolerated(0.5) benign(0.175) TCGA-BR-7707-01 11 118375915 118375915 A - KMT2A Frame_Shift_Del p.I3105Sfs*3 0.15 TCGA-BR-7707-01 11 118516165 118516165 C T PHLDB1 Silent p.H1071H 0.29 TCGA-BR-7707-01 11 118849724 118849724 C T FOXR1 Missense_Mutation p.P65L 0.12 tolerated(0.7) benign(0.059) TCGA-BR-7707-01 11 120317769 120317769 A T ARHGEF12 Missense_Mutation p.I522F 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-BR-7707-01 11 120776003 120776003 A C GRIK4 Missense_Mutation p.N426T 0.06 deleterious(0.03) benign(0.265) TCGA-BR-7707-01 11 120929174 120929174 T A TBCEL Missense_Mutation p.I278K 0.06 deleterious(0) benign(0.316) TCGA-BR-7707-01 11 121000699 121000699 G A TECTA Missense_Mutation p.R907Q 0.19 tolerated(0.65) benign(0.013) TCGA-BR-7707-01 11 123483485 123483485 C T GRAMD1B Missense_Mutation p.R503C 0.18 tolerated(0.23) probably_damaging(0.998) TCGA-BR-7707-01 11 125547803 125547803 G A ACRV1 Missense_Mutation p.H148Y 0.26 tolerated(0.16) possibly_damaging(0.491) TCGA-BR-7707-01 11 126136701 126136701 C T SRPR Missense_Mutation p.E215K 0.33 tolerated(0.44) possibly_damaging(0.858) TCGA-BR-7707-01 11 126396494 126396494 G A KIRREL3 Silent p.Y74Y 0.36 TCGA-BR-7707-01 11 1265003 1265003 C A MUC5B Missense_Mutation p.P2298H 0.08 unknown(0) TCGA-BR-7707-01 11 1267404 1267404 C A MUC5B Silent p.S3098S 0.24 TCGA-BR-7707-01 11 1275943 1275943 C T MUC5B Missense_Mutation p.P5166L 0.18 unknown(0) TCGA-BR-7707-01 11 134121181 134121181 C T THYN1 Missense_Mutation p.R22H 0.10 tolerated(0.07) benign(0.008) TCGA-BR-7707-01 11 14063134 14063134 C T SPON1 RNA 0.27 TCGA-BR-7707-01 11 15267605 15267605 T A INSC 3'UTR 0.06 TCGA-BR-7707-01 11 18195721 18195721 G C MRGPRX4 Silent p.G306G 0.27 TCGA-BR-7707-01 11 18743459 18743459 T C IGSF22 Missense_Mutation p.E80G 0.06 deleterious(0.04) benign(0.022) TCGA-BR-7707-01 11 18764001 18764001 G - PTPN5 Frame_Shift_Del p.P178Lfs*8 0.08 TCGA-BR-7707-01 11 19077849 19077849 A G MRGPRX2 Missense_Mutation p.V34A 0.09 tolerated(0.81) benign(0) TCGA-BR-7707-01 11 22364897 22364897 G A SLC17A6 Silent p.R148R 0.08 TCGA-BR-7707-01 11 31823241 31823241 T C PAX6 Silent p.K89K 0.11 TCGA-BR-7707-01 11 33124659 33124659 T C CSTF3 Silent p.V219V 0.07 TCGA-BR-7707-01 11 33308323 33308323 C - HIPK3 Frame_Shift_Del p.Q123Sfs*5 0.14 TCGA-BR-7707-01 11 34910341 34910341 T - APIP Frame_Shift_Del p.S95Afs*8 0.37 TCGA-BR-7707-01 11 36595836 36595836 T C RAG1 Missense_Mutation p.C328R 0.10 deleterious_low_confidence(0) probably_damaging(1) TCGA-BR-7707-01 11 4045107 4045107 T C STIM1 Missense_Mutation p.L92P 0.13 deleterious(0) probably_damaging(0.998) TCGA-BR-7707-01 11 418445 418445 C - ANO9 Frame_Shift_Del p.A759Qfs*36 0.23 TCGA-BR-7707-01 11 45936234 45936234 A G PEX16 Silent p.D154D 0.23 TCGA-BR-7707-01 11 46407805 46407805 G A CHRM4 Silent p.G101G 0.39 TCGA-BR-7707-01 11 46701278 46701278 A T ARHGAP1 Missense_Mutation p.V316D 0.11 deleterious(0) probably_damaging(1) TCGA-BR-7707-01 11 4825255 4825255 A G OR52R1 Missense_Mutation p.M119T 0.13 tolerated(0.11) possibly_damaging(0.889) TCGA-BR-7707-01 11 4870019 4870019 G C OR51S1 Nonsense_Mutation p.Y140* 0.09 TCGA-BR-7707-01 11 49598008 49598008 G A RP11-707M1.1 RNA 0.34 TCGA-BR-7707-01 11 51412264 51412264 C A OR4A5 Silent p.V44V 0.26 TCGA-BR-7707-01 11 5462646 5462646 G T OR51I1 Missense_Mutation p.F33L 0.20 tolerated(0.78) probably_damaging(0.986) TCGA-BR-7707-01 11 55322033 55322033 T C OR4C15 Missense_Mutation p.L84S 0.10 deleterious_low_confidence(0.03) benign(0.306) TCGA-BR-7707-01 11 55944903 55944903 A G OR5J2 Silent p.Q270Q 0.21 TCGA-BR-7707-01 11 55944935 55944935 G T OR5J2 Missense_Mutation p.G281V 0.23 tolerated(1) benign(0) TCGA-BR-7707-01 11 56431414 56431414 T C OR5AR1 Missense_Mutation p.F85L 0.11 tolerated(0.67) benign(0) TCGA-BR-7707-01 11 57506647 57506647 T C TMX2 Missense_Mutation p.L220P 0.33 deleterious(0) probably_damaging(1) TCGA-BR-7707-01 11 60269470 60269471 CT - MS4A12 Frame_Shift_Del p.S146Cfs*22 0.10 TCGA-BR-7707-01 11 62543364 62543364 G A TAF6L Missense_Mutation p.A37T 0.26 tolerated(0.07) probably_damaging(0.968) TCGA-BR-7707-01 11 62554095 62554095 G T TAF6L Missense_Mutation p.S399I 0.23 tolerated(0.07) benign(0.022) TCGA-BR-7707-01 11 62984953 62984953 A G SLC22A25 Silent p.I221I 0.14 TCGA-BR-7707-01 11 64054186 64054186 G A GPR137 Missense_Mutation p.A122T 0.28 tolerated(0.15) possibly_damaging(0.545) TCGA-BR-7707-01 11 64519098 64519099 - A PYGM Frame_Shift_Ins p.V600Cfs*35 0.13 TCGA-BR-7707-01 11 64595242 64595242 G - CDC42BPG Frame_Shift_Del p.Y1328Tfs*2 0.10 TCGA-BR-7707-01 11 64893062 64893062 G A MRPL49 Missense_Mutation p.R111Q 0.23 tolerated(0.05) benign(0.404) TCGA-BR-7707-01 11 64972290 64972290 C T CAPN1 Silent p.F434F 0.29 TCGA-BR-7707-01 11 65367034 65367034 G - MAP3K11 Frame_Shift_Del p.T680Rfs*267 0.09 TCGA-BR-7707-01 11 65367065 65367065 C T MAP3K11 Missense_Mutation p.R669H 0.26 deleterious(0.04) probably_damaging(0.964) TCGA-BR-7707-01 11 65545802 65545802 G A AP5B1 Missense_Mutation p.A721V 0.26 tolerated(0.12) benign(0.004) TCGA-BR-7707-01 11 65546165 65546165 G A AP5B1 Missense_Mutation p.A600V 0.31 tolerated(0.12) probably_damaging(0.991) TCGA-BR-7707-01 11 65650135 65650135 C T CTSW Silent p.D198D 0.25 TCGA-BR-7707-01 11 66033912 66033912 G A KLC2 Missense_Mutation p.R579Q 0.29 deleterious_low_confidence(0) benign(0.285) TCGA-BR-7707-01 11 66130984 66130984 C T SLC29A2 Missense_Mutation p.A432T 0.25 tolerated(0.19) benign(0.023) TCGA-BR-7707-01 11 66610523 66610523 C A C11orf80 Missense_Mutation p.L651I 0.25 tolerated(0.28) benign(0.021) TCGA-BR-7707-01 11 67048952 67048952 A - ADRBK1 Frame_Shift_Del p.K225Sfs*5 0.21 TCGA-BR-7707-01 11 67377024 67377024 T G NDUFV1 Missense_Mutation p.L143R 0.10 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-BR-7707-01 11 67941281 67941281 T C SUV420H1 Missense_Mutation p.T215A 0.13 deleterious(0) probably_damaging(0.928) TCGA-BR-7707-01 11 68530165 68530165 G A CPT1A Missense_Mutation p.T602M 0.14 deleterious(0) probably_damaging(0.999) TCGA-BR-7707-01 11 70261793 70261793 G A CTTN Missense_Mutation p.G143R 0.09 deleterious(0.01) probably_damaging(1) TCGA-BR-7707-01 11 7065123 7065123 T C NLRP14 Silent p.L622L 0.08 TCGA-BR-7707-01 11 71192428 71192429 - T NADSYN1 Frame_Shift_Ins p.L344Ffs*42 0.18 TCGA-BR-7707-01 11 71939260 71939260 G A INPPL1 Missense_Mutation p.R70H 0.08 deleterious(0) probably_damaging(0.999) TCGA-BR-7707-01 11 73071483 73071483 G A ARHGEF17 Missense_Mutation p.R1442Q 0.07 tolerated(0.24) possibly_damaging(0.791) TCGA-BR-7707-01 11 73071553 73071553 C A ARHGEF17 Silent p.A1465A 0.16 TCGA-BR-7707-01 11 75298476 75298476 A G MAP6 Silent p.H690H 0.32 TCGA-BR-7707-01 11 7586879 7586879 A G PPFIBP2 Missense_Mutation p.I54V 0.19 tolerated(1) benign(0.001) TCGA-BR-7707-01 11 77924738 77924739 - C USP35 Frame_Shift_Ins p.T981Hfs*10 0.11 TCGA-BR-7707-01 11 812778 812780 AGA - RPLP2 In_Frame_Del p.K99del 0.28 TCGA-BR-7707-01 11 85593593 85593593 G A CCDC83 Missense_Mutation p.R73Q 0.25 tolerated(0.11) benign(0.016) TCGA-BR-7707-01 11 88068108 88068108 A - CTSC Frame_Shift_Del p.F105Lfs*10 0.26 TCGA-BR-7707-01 11 88241732 88241732 C T GRM5 3'UTR 0.31 TCGA-BR-7707-01 11 92702976 92702976 C T MTNR1B Missense_Mutation p.R29W 0.28 deleterious(0.01) possibly_damaging(0.586) TCGA-BR-7707-01 11 9492923 9492923 C T ZNF143 Missense_Mutation p.A23V 0.24 deleterious_low_confidence(0.01) benign(0.026) TCGA-BR-7707-01 12 101555808 101555808 C T SLC5A8 Missense_Mutation p.S525N 0.06 deleterious(0.04) benign(0.126) TCGA-BR-7707-01 12 10224068 10224068 C T CLEC1A Missense_Mutation p.C236Y 0.27 deleterious(0) probably_damaging(1) TCGA-BR-7707-01 12 10772734 10772734 C A STYK1 3'UTR 0.10 TCGA-BR-7707-01 12 108918245 108918245 C T SART3 Silent p.A854A 0.22 TCGA-BR-7707-01 12 110019240 110019240 C - MVK Frame_Shift_Del p.A141Rfs*18 0.25 TCGA-BR-7707-01 12 110238436 110238437 - C TRPV4 Frame_Shift_Ins p.Y281Lfs*53 0.17 TCGA-BR-7707-01 12 112711506 112711506 T G HECTD4 Missense_Mutation p.Y488S 0.09 benign(0.001) TCGA-BR-7707-01 12 113553825 113553825 G A RASAL1 Missense_Mutation p.R255C 0.17 deleterious(0.04) probably_damaging(0.988) TCGA-BR-7707-01 12 113907132 113907132 G A LHX5 Silent p.C64C 0.10 TCGA-BR-7707-01 12 117365934 117365934 T C FBXW8 Splice_Site p.X141_splice 0.10 TCGA-BR-7707-01 12 119563220 119563220 C T SRRM4 Missense_Mutation p.R184C 0.21 deleterious_low_confidence(0) unknown(0) TCGA-BR-7707-01 12 119617314 119617314 C T HSPB8 Missense_Mutation p.S66L 0.31 deleterious(0.03) benign(0.017) TCGA-BR-7707-01 12 120569133 120569133 G A GCN1L1 Silent p.D2473D 0.08 TCGA-BR-7707-01 12 120597681 120597681 G A GCN1L1 Silent p.N899N 0.13 TCGA-BR-7707-01 12 121205374 121205374 T C SPPL3 Missense_Mutation p.M266V 0.08 deleterious(0.02) benign(0.085) TCGA-BR-7707-01 12 122018691 122018691 C A KDM2B Missense_Mutation p.Q42H 0.05 deleterious(0.02) benign(0.361) TCGA-BR-7707-01 12 122218958 122218958 G A TMEM120B 3'UTR 0.11 TCGA-BR-7707-01 12 122684777 122684777 T G LRRC43 Missense_Mutation p.V464G 0.18 deleterious(0) possibly_damaging(0.772) TCGA-BR-7707-01 12 123471271 123471271 G A PITPNM2 Silent p.G1173G 0.26 TCGA-BR-7707-01 12 123749783 123749783 C T CDK2AP1 Silent p.T80T 0.06 TCGA-BR-7707-01 12 124270304 124270304 C T DNAH10 Silent p.H353H 0.13 TCGA-BR-7707-01 12 124841251 124841251 G - NCOR2 Frame_Shift_Del p.R1060Vfs*3 0.17 TCGA-BR-7707-01 12 131471729 131471729 A G GPR133 Missense_Mutation p.S194G 0.08 tolerated(0.09) benign(0.232) TCGA-BR-7707-01 12 132325164 132325164 C T MMP17 Missense_Mutation p.R157C 0.20 deleterious(0) probably_damaging(0.998) TCGA-BR-7707-01 12 13232857 13232857 C T KIAA1467 Nonsense_Mutation p.Q593* 0.30 TCGA-BR-7707-01 12 14944150 14944152 TTC - WBP11 In_Frame_Del p.K322del 0.31 TCGA-BR-7707-01 12 21926551 21926551 C T KCNJ8 5'UTR 0.24 TCGA-BR-7707-01 12 22609932 22609932 A - C2CD5 Frame_Shift_Del p.F899Lfs*29 0.08 TCGA-BR-7707-01 12 23999035 23999035 G A SOX5 Silent p.G121G 0.29 TCGA-BR-7707-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.24 deleterious(0) benign(0.361) TCGA-BR-7707-01 12 26551954 26551954 T C ITPR2 Silent p.R2517R 0.36 TCGA-BR-7707-01 12 2786373 2786373 G A CACNA1C Missense_Mutation p.A1696T 0.18 tolerated(1) benign(0.002) TCGA-BR-7707-01 12 30792613 30792613 A G IPO8 Silent p.T775T 0.06 TCGA-BR-7707-01 12 30826944 30826944 A G IPO8 Missense_Mutation p.Y297H 0.09 deleterious(0) benign(0.386) TCGA-BR-7707-01 12 3701425 3701425 G A PRMT8 Silent p.K336K 0.12 TCGA-BR-7707-01 12 47629940 47629940 C T PCED1B Missense_Mutation p.A365V 0.24 tolerated(0.78) benign(0) TCGA-BR-7707-01 12 48737243 48737243 G A ZNF641 Missense_Mutation p.S277F 0.09 deleterious(0) probably_damaging(0.991) TCGA-BR-7707-01 12 49165623 49165623 G A ADCY6 Missense_Mutation p.S974L 0.35 deleterious(0) possibly_damaging(0.587) TCGA-BR-7707-01 12 49226331 49226331 G T DDX23 Missense_Mutation p.P610H 0.17 deleterious(0) probably_damaging(0.995) TCGA-BR-7707-01 12 49361903 49361903 G A WNT10B Silent p.S179S 0.10 TCGA-BR-7707-01 12 49425776 49425776 G A KMT2D Missense_Mutation p.R4238C 0.37 unknown(0) TCGA-BR-7707-01 12 49948156 49948156 G A KCNH3 Missense_Mutation p.R652Q 0.10 tolerated(0.41) benign(0.019) TCGA-BR-7707-01 12 50498451 50498451 G T GPD1 Nonsense_Mutation p.G46* 0.08 TCGA-BR-7707-01 12 51450008 51450008 C T LETMD1 Nonsense_Mutation p.Q261* 0.09 TCGA-BR-7707-01 12 51461489 51461489 C T CSRNP2 Silent p.A225A 0.23 TCGA-BR-7707-01 12 51470194 51470194 G A CSRNP2 Missense_Mutation p.P51S 0.11 deleterious(0.03) possibly_damaging(0.748) TCGA-BR-7707-01 12 5154886 5154886 C T KCNA5 Missense_Mutation p.R525W 0.22 deleterious(0) probably_damaging(0.999) TCGA-BR-7707-01 12 51634184 51634184 C A DAZAP2 Missense_Mutation p.P24H 0.27 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BR-7707-01 12 52377793 52377793 C A ACVR1B Silent p.T315T 0.06 TCGA-BR-7707-01 12 52567501 52567501 G A KRT80 Silent p.V238V 0.24 TCGA-BR-7707-01 12 52845641 52845641 C A KRT6B Silent p.G74G 0.26 TCGA-BR-7707-01 12 52867410 52867410 C T KRT6C Missense_Mutation p.V38M 0.23 tolerated(0.23) unknown(0) TCGA-BR-7707-01 12 53457555 53457555 G A TENC1 Silent p.P1383P 0.23 TCGA-BR-7707-01 12 53517580 53517580 C T SOAT2 Silent p.L481L 0.15 TCGA-BR-7707-01 12 53686104 53686104 A C ESPL1 Missense_Mutation p.S1947R 0.26 tolerated(0.47) benign(0.02) TCGA-BR-7707-01 12 54676031 54676031 G T HNRNPA1 Missense_Mutation p.R146M 0.28 deleterious(0.01) probably_damaging(0.995) TCGA-BR-7707-01 12 54930016 54930016 C T NCKAP1L Silent p.S1020S 0.10 TCGA-BR-7707-01 12 56397718 56397718 G A SUOX Missense_Mutation p.R182H 0.17 deleterious(0) possibly_damaging(0.801) TCGA-BR-7707-01 12 56579984 56579984 C A SMARCC2 Missense_Mutation p.C91F 0.24 deleterious(0) benign(0.308) TCGA-BR-7707-01 12 56669893 56669893 G A CS Silent p.S225S 0.22 TCGA-BR-7707-01 12 56716264 56716264 G A PAN2 Silent p.G884G 0.18 TCGA-BR-7707-01 12 56718366 56718366 T C PAN2 Missense_Mutation p.Q576R 0.05 deleterious(0) probably_damaging(0.998) TCGA-BR-7707-01 12 57107321 57107321 C T NACA Silent p.K837K 0.08 TCGA-BR-7707-01 12 57963455 57963455 G A KIF5A Missense_Mutation p.R369Q 0.31 deleterious(0.04) benign(0.012) TCGA-BR-7707-01 12 58152041 58152041 A T MARCH9 Missense_Mutation p.I222F 0.11 deleterious(0) probably_damaging(0.991) TCGA-BR-7707-01 12 6309602 6309602 A G CD9 5'UTR 0.17 TCGA-BR-7707-01 12 66696454 66696454 A G HELB Missense_Mutation p.E24G 0.06 tolerated(0.13) unknown(0) TCGA-BR-7707-01 12 6707121 6707121 G A CHD4 Missense_Mutation p.R611C 0.32 deleterious(0) possibly_damaging(0.876) TCGA-BR-7707-01 12 68724964 68724964 T - MDM1 Frame_Shift_Del p.K19Sfs*26 0.09 TCGA-BR-7707-01 12 75884201 75884201 A G GLIPR1 Missense_Mutation p.S146G 0.24 deleterious(0) probably_damaging(0.987) TCGA-BR-7707-01 12 76741529 76741530 - T BBS10 Frame_Shift_Ins p.T79Nfs*17 0.18 TCGA-BR-7707-01 12 7899953 7899953 C T CLEC4C 5'UTR 0.25 TCGA-BR-7707-01 12 7970451 7970451 G A SLC2A14 Silent p.V440V 0.29 TCGA-BR-7707-01 12 8074006 8074006 G A SLC2A3 3'UTR 0.04 TCGA-BR-7707-01 12 81111208 81111208 G A MYF5 Silent p.E122E 0.09 TCGA-BR-7707-01 12 81741514 81741514 C T PPFIA2 Missense_Mutation p.R677H 0.11 deleterious(0) probably_damaging(0.992) TCGA-BR-7707-01 12 8281937 8281937 A - CLEC4A Frame_Shift_Del p.N95Ifs*49 0.27 TCGA-BR-7707-01 12 85450035 85450035 A - LRRIQ1 Frame_Shift_Del p.K490Nfs*28 0.13 TCGA-BR-7707-01 12 89992939 89992939 A G ATP2B1 Silent p.R1102R 0.08 TCGA-BR-7707-01 12 93192691 93192691 G A EEA1 Missense_Mutation p.L982F 0.11 deleterious(0.01) benign(0.236) TCGA-BR-7707-01 12 94806263 94806263 C T CCDC41 Missense_Mutation p.V2I 0.17 tolerated_low_confidence(0.3) benign(0.01) TCGA-BR-7707-01 12 95604120 95604120 T C FGD6 Missense_Mutation p.T314A 0.08 tolerated_low_confidence(0.11) benign(0.013) TCGA-BR-7707-01 12 96674556 96674556 G A CDK17 Intron 0.33 TCGA-BR-7707-01 12 97043775 97043775 A C C12orf55 Missense_Mutation p.K1599N 0.12 deleterious(0.01) benign(0.354) TCGA-BR-7707-01 13 113470405 113470405 C T ATP11A Silent p.D150D 0.24 TCGA-BR-7707-01 13 114152698 114152698 T C TMCO3 Silent p.H162H 0.08 TCGA-BR-7707-01 13 22084194 22084194 C T MICU2 Missense_Mutation p.R237H 0.25 tolerated(1) benign(0.001) TCGA-BR-7707-01 13 23905259 23905259 A G SACS Silent p.S4252S 0.19 TCGA-BR-7707-01 13 23928962 23928962 A C SACS Missense_Mutation p.S597A 0.07 benign(0.001) TCGA-BR-7707-01 13 25067820 25067820 C T PARP4 Missense_Mutation p.D265N 0.10 tolerated(0.34) benign(0.016) TCGA-BR-7707-01 13 25905705 25905705 G A NUPL1 Intron 0.31 TCGA-BR-7707-01 13 27257105 27257105 C T WASF3 Nonsense_Mutation p.R449* 0.25 TCGA-BR-7707-01 13 35733851 35733851 T C NBEA Silent p.S1181S 0.27 TCGA-BR-7707-01 13 41800599 41800599 T G MTRF1 Missense_Mutation p.K365T 0.33 tolerated(1) benign(0.026) TCGA-BR-7707-01 13 45980093 45980093 G A SLC25A30 Missense_Mutation p.R78C 0.28 deleterious(0) probably_damaging(0.999) TCGA-BR-7707-01 13 46083848 46083848 C A COG3 Missense_Mutation p.P539H 0.26 deleterious(0.02) benign(0.182) TCGA-BR-7707-01 13 50095067 50095067 G A PHF11 Missense_Mutation p.A166T 0.10 tolerated(1) benign(0.001) TCGA-BR-7707-01 13 52593203 52593203 T - ALG11 Frame_Shift_Del p.H69Ifs*18 0.09 TCGA-BR-7707-01 13 53216743 53216743 C T HNRNPA1L2 Missense_Mutation p.T39M 0.29 tolerated(0.41) benign(0.222) TCGA-BR-7707-01 13 53313766 53313766 G - LECT1 Frame_Shift_Del p.P24Rfs*6 0.20 TCGA-BR-7707-01 13 58207949 58207949 G A PCDH17 Silent p.T423T 0.38 TCGA-BR-7707-01 13 58208794 58208794 C T PCDH17 Missense_Mutation p.S705L 0.22 deleterious(0) probably_damaging(0.999) TCGA-BR-7707-01 13 73636260 73636260 A G KLF5 Missense_Mutation p.T175A 0.11 tolerated(0.81) benign(0.001) TCGA-BR-7707-01 13 75873705 75873705 T A TBC1D4 Missense_Mutation p.T973S 0.35 deleterious(0.02) benign(0.365) TCGA-BR-7707-01 13 75901921 75901921 A G TBC1D4 Silent p.S591S 0.32 TCGA-BR-7707-01 13 79177518 79177518 T C POU4F1 5'UTR 0.08 TCGA-BR-7707-01 13 84454847 84454847 G A SLITRK1 Nonsense_Mutation p.R266* 0.08 TCGA-BR-7707-01 13 96375615 96375615 A G DNAJC3 Missense_Mutation p.T105A 0.10 tolerated(0.18) benign(0.03) TCGA-BR-7707-01 13 98645415 98645415 C T IPO5 Silent p.I301I 0.14 TCGA-BR-7707-01 13 98828582 98828582 G A RNF113B Silent p.P303P 0.28 TCGA-BR-7707-01 13 99092225 99092225 G T FARP1 Missense_Mutation p.S815I 0.04 deleterious(0) possibly_damaging(0.776) TCGA-BR-7707-01 14 100801346 100801346 C T WARS Missense_Mutation p.G428S 0.11 deleterious(0.04) probably_damaging(1) TCGA-BR-7707-01 14 101393683 101393683 C T SNORD113-2 RNA 0.06 TCGA-BR-7707-01 14 101439979 101439979 G A SNORD114-16 RNA 0.09 TCGA-BR-7707-01 14 102359431 102359431 G A PPP2R5C Missense_Mutation p.V293I 0.08 tolerated(0.08) benign(0.016) TCGA-BR-7707-01 14 102676020 102676020 C A WDR20 Missense_Mutation p.P536T 0.07 tolerated(0.08) benign(0.06) TCGA-BR-7707-01 14 102717229 102717229 C T MOK Silent p.P170P 0.07 TCGA-BR-7707-01 14 105350360 105350360 G A CEP170B Missense_Mutation p.R415Q 0.21 deleterious(0.02) possibly_damaging(0.68) TCGA-BR-7707-01 14 105622217 105622217 G A JAG2 Silent p.R195R 0.24 TCGA-BR-7707-01 14 105643090 105643090 A G NUDT14 Missense_Mutation p.V70A 0.08 tolerated(0.14) benign(0.021) TCGA-BR-7707-01 14 105693007 105693007 C T BRF1 Silent p.S293S 0.28 TCGA-BR-7707-01 14 106091026 106091026 G A IGHG4 Silent p.I257I 0.08 TCGA-BR-7707-01 14 106173670 106173670 G A IGHA1 Silent p.R299R 0.12 TCGA-BR-7707-01 14 106667652 106667652 C T IGHV3-20 Missense_Mutation p.A94T 0.24 deleterious_low_confidence(0.05) benign(0.078) TCGA-BR-7707-01 14 107282974 107282974 G A IGHV7-81 Missense_Mutation p.P57S 0.11 deleterious(0) benign(0.001) TCGA-BR-7707-01 14 21024951 21024951 T C RNASE9 Missense_Mutation p.Y98C 0.09 deleterious(0) probably_damaging(0.961) TCGA-BR-7707-01 14 21052427 21052427 A G RNASE11 Silent p.D69D 0.12 TCGA-BR-7707-01 14 21769187 21769187 C A RPGRIP1 Missense_Mutation p.A94E 0.10 tolerated(0.67) benign(0.013) TCGA-BR-7707-01 14 21944741 21944741 G A RAB2B Missense_Mutation p.L22F 0.30 deleterious(0) probably_damaging(0.923) TCGA-BR-7707-01 14 21955822 21955822 C T TOX4 Silent p.G96G 0.15 TCGA-BR-7707-01 14 23522901 23522901 G A CDH24 Missense_Mutation p.L344F 0.11 tolerated(0.12) benign(0.152) TCGA-BR-7707-01 14 23818480 23818480 C T SLC22A17 Splice_Site p.X176_splice 0.27 TCGA-BR-7707-01 14 23871975 23871975 G A MYH6 Silent p.Y311Y 0.26 TCGA-BR-7707-01 14 23898464 23898464 C T MYH7 Missense_Mutation p.V411I 0.27 deleterious(0.05) probably_damaging(0.939) TCGA-BR-7707-01 14 24523312 24523312 C T LRRC16B Missense_Mutation p.R51C 0.16 deleterious(0) probably_damaging(0.997) TCGA-BR-7707-01 14 24532697 24532697 G T LRRC16B Missense_Mutation p.R978S 0.08 deleterious(0) probably_damaging(0.986) TCGA-BR-7707-01 14 24537831 24537831 A G LRRC16B Missense_Mutation p.S1241G 0.11 tolerated(0.27) unknown(0) TCGA-BR-7707-01 14 24620009 24620009 C - RNF31 Frame_Shift_Del p.L469Cfs*23 0.12 TCGA-BR-7707-01 14 24791428 24791428 A G ADCY4 Silent p.N810N 0.12 TCGA-BR-7707-01 14 29237305 29237305 C T FOXG1 Missense_Mutation p.R274W 0.32 deleterious(0) probably_damaging(1) TCGA-BR-7707-01 14 36147154 36147154 G A RALGAPA1 Splice_Site p.X1036_splice 0.27 TCGA-BR-7707-01 14 36302197 36302197 C T BRMS1L Nonsense_Mutation p.R83* 0.14 TCGA-BR-7707-01 14 36840675 36840675 C T DPPA3P2 RNA 0.24 TCGA-BR-7707-01 14 37132240 37132240 T C PAX9 Missense_Mutation p.V48A 0.14 deleterious(0) benign(0.32) TCGA-BR-7707-01 14 42356964 42356964 A G LRFN5 Missense_Mutation p.H379R 0.10 deleterious(0.02) possibly_damaging(0.542) TCGA-BR-7707-01 14 45414264 45414264 C G KLHL28 Missense_Mutation p.G290R 0.06 deleterious(0.01) probably_damaging(0.978) TCGA-BR-7707-01 14 45645243 45645243 C T FANCM Missense_Mutation p.P1096S 0.09 tolerated(0.57) benign(0.001) TCGA-BR-7707-01 14 47342767 47342767 C T MDGA2 Missense_Mutation p.R874Q 0.09 deleterious(0.03) possibly_damaging(0.787) TCGA-BR-7707-01 14 47530771 47530771 T - MDGA2 Frame_Shift_Del p.G403Dfs*22 0.52 TCGA-BR-7707-01 14 50606660 50606661 - A SOS2 Frame_Shift_Ins p.G929Wfs*15 0.38 TCGA-BR-7707-01 14 51561493 51561493 G A TRIM9 Silent p.S55S 0.18 TCGA-BR-7707-01 14 52417379 52417379 G T GNG2 5'UTR 0.25 TCGA-BR-7707-01 14 55429711 55429711 C T WDHD1 Silent p.E830E 0.21 TCGA-BR-7707-01 14 58734211 58734211 G A PSMA3 Missense_Mutation p.R188H 0.14 deleterious(0.03) benign(0.006) TCGA-BR-7707-01 14 58863027 58863027 G A TOMM20L Missense_Mutation p.E50K 0.08 tolerated(0.62) benign(0.005) TCGA-BR-7707-01 14 64066595 64066595 C T WDR89 Silent p.E22E 0.16 TCGA-BR-7707-01 14 64408821 64408821 T G SYNE2 Missense_Mutation p.I123S 0.10 probably_damaging(0.997) TCGA-BR-7707-01 14 65008911 65008911 C T HSPA2 Silent p.G448G 0.06 TCGA-BR-7707-01 14 69701505 69701505 A - EXD2 Frame_Shift_Del p.N271Tfs*27 0.19 TCGA-BR-7707-01 14 72152299 72152299 G A SIPA1L1 Missense_Mutation p.A1109T 0.08 tolerated(0.17) benign(0.001) TCGA-BR-7707-01 14 73409783 73409783 C T DCAF4 Silent p.S171S 0.22 TCGA-BR-7707-01 14 73730973 73730973 C T PAPLN Silent p.D945D 0.23 TCGA-BR-7707-01 14 75361105 75361105 G A DLST Missense_Mutation p.D255N 0.08 deleterious(0) probably_damaging(1) TCGA-BR-7707-01 14 75544291 75544291 G A ZC2HC1C 3'UTR 0.08 TCGA-BR-7707-01 14 77942332 77942332 G T ISM2 Missense_Mutation p.P441H 0.08 deleterious(0) possibly_damaging(0.745) TCGA-BR-7707-01 14 80328033 80328033 G A NRXN3 Missense_Mutation p.R971Q 0.28 tolerated(0.56) benign(0) TCGA-BR-7707-01 14 80669184 80669184 C T DIO2 Missense_Mutation p.G260R 0.28 deleterious(0) probably_damaging(0.996) TCGA-BR-7707-01 14 88940113 88940113 T - PTPN21 Frame_Shift_Del p.I849Lfs*9 0.28 TCGA-BR-7707-01 14 88946663 88946663 T C PTPN21 Missense_Mutation p.Y371C 0.08 deleterious(0) probably_damaging(0.999) TCGA-BR-7707-01 14 89878421 89878421 G A FOXN3 Missense_Mutation p.R134C 0.12 tolerated(0.14) possibly_damaging(0.702) TCGA-BR-7707-01 14 91925133 91925133 T C SMEK1 Silent p.P811P 0.13 TCGA-BR-7707-01 14 93170987 93170993 GTGAAGC TGAAGT LGMN Frame_Shift_Del p.H419Qfs*3 0.14 TCGA-BR-7707-01 14 93730184 93730184 A - BTBD7 Frame_Shift_Del p.Y440Mfs*28 0.14 TCGA-BR-7707-01 14 94103591 94103591 A G UNC79 Missense_Mutation p.N1778D 0.09 tolerated_low_confidence(0.06) benign(0.046) TCGA-BR-7707-01 14 95562378 95562378 C T DICER1 Missense_Mutation p.A1627T 0.11 tolerated(0.6) benign(0.001) TCGA-BR-7707-01 14 95679626 95679626 C T CLMN Missense_Mutation p.A180T 0.09 deleterious(0.03) benign(0.265) TCGA-BR-7707-01 14 99872896 99872896 C T SETD3 Missense_Mutation p.R294H 0.31 deleterious(0.01) possibly_damaging(0.833) TCGA-BR-7707-01 15 101971538 101971538 A G PCSK6 Missense_Mutation p.L214P 0.10 deleterious(0) probably_damaging(1) TCGA-BR-7707-01 15 22928165 22928165 A G CYFIP1 Missense_Mutation p.M82V 0.26 tolerated(0.06) benign(0.097) TCGA-BR-7707-01 15 23889660 23889660 A G MAGEL2 Missense_Mutation p.L474S 0.28 deleterious(0) probably_damaging(0.999) TCGA-BR-7707-01 15 23932112 23932112 C T NDN Missense_Mutation p.A85T 0.40 tolerated(0.57) benign(0.001) TCGA-BR-7707-01 15 25304706 25304706 A - SNORD116-3 3'Flank 0.19 TCGA-BR-7707-01 15 25456987 25456987 A G SNORD115-23 RNA 0.09 TCGA-BR-7707-01 15 25971230 25971230 C A ATP10A Splice_Site p.X283_splice 0.06 TCGA-BR-7707-01 15 28514464 28514464 G A HERC2 Missense_Mutation p.A459V 0.22 benign(0.156) TCGA-BR-7707-01 15 31332410 31332410 G A TRPM1 Missense_Mutation p.R760W 0.25 deleterious(0) probably_damaging(0.997) TCGA-BR-7707-01 15 34123231 34123231 A T RYR3 Missense_Mutation p.N3801I 0.20 probably_damaging(0.991) TCGA-BR-7707-01 15 34168182 34168182 G A AVEN Nonsense_Mutation p.Q154* 0.31 TCGA-BR-7707-01 15 34295366 34295366 A G AVEN Silent p.D104D 0.33 TCGA-BR-7707-01 15 35273567 35273567 A G ZNF770 Missense_Mutation p.V690A 0.17 tolerated_low_confidence(0.08) benign(0.211) TCGA-BR-7707-01 15 37388529 37388529 G A MEIS2 Silent p.S116S 0.17 TCGA-BR-7707-01 15 37390178 37390178 C T MEIS2 Missense_Mutation p.A79T 0.17 deleterious(0.04) possibly_damaging(0.636) TCGA-BR-7707-01 15 38616968 38616968 C - SPRED1 Frame_Shift_Del p.E129Nfs*23 0.27 TCGA-BR-7707-01 15 39881276 39881276 G T THBS1 Missense_Mutation p.D588Y 0.28 deleterious(0) probably_damaging(0.991) TCGA-BR-7707-01 15 42126983 42126983 C G JMJD7-PLA2G4B Missense_Mutation p.T37S 0.09 tolerated_low_confidence(1) benign(0.004) TCGA-BR-7707-01 15 42492117 42492119 AGA - VPS39 In_Frame_Del p.L39del 0.15 TCGA-BR-7707-01 15 43020419 43020419 C A CDAN1 Nonsense_Mutation p.E951* 0.09 TCGA-BR-7707-01 15 43585733 43585733 C T TGM7 Missense_Mutation p.R36H 0.55 deleterious(0.01) probably_damaging(0.984) TCGA-BR-7707-01 15 43724418 43724418 C - TP53BP1 Frame_Shift_Del p.D1217Mfs*29 0.08 TCGA-BR-7707-01 15 45003812 45003812 G A B2M Splice_Site p.X23_splice 0.63 TCGA-BR-7707-01 15 45392026 45392026 T C DUOX2 Silent p.S1083S 0.11 TCGA-BR-7707-01 15 45814242 45814243 - TC SLC30A4 Frame_Shift_Ins p.I104Rfs*3 0.50 TCGA-BR-7707-01 15 51692688 51692688 T - GLDN Frame_Shift_Del p.S342Qfs*15 0.41 TCGA-BR-7707-01 15 51773773 51773773 G T DMXL2 Missense_Mutation p.L1844I 0.53 deleterious(0) possibly_damaging(0.807) TCGA-BR-7707-01 15 52897418 52897418 A G FAM214A Missense_Mutation p.V791A 0.10 tolerated(0.17) benign(0.146) TCGA-BR-7707-01 15 53994441 53994441 G T WDR72 Missense_Mutation p.L487M 0.08 tolerated(0.06) benign(0.393) TCGA-BR-7707-01 15 55621922 55621922 T - PIGB Frame_Shift_Del p.C177Afs*26 0.13 TCGA-BR-7707-01 15 56959098 56959098 G T ZNF280D Silent p.L544L 0.08 TCGA-BR-7707-01 15 60745782 60745782 A - NARG2 Intron 0.56 TCGA-BR-7707-01 15 65040633 65040633 G A RBPMS2 Silent p.A184A 0.11 TCGA-BR-7707-01 15 65502108 65502108 C T CILP 5'UTR 0.46 TCGA-BR-7707-01 15 70960242 70960242 C T UACA Silent p.E927E 0.14 TCGA-BR-7707-01 15 74425583 74425583 C T ISLR2 Missense_Mutation p.A163V 0.09 tolerated(0.39) benign(0.155) TCGA-BR-7707-01 15 75117889 75117889 C A LMAN1L Silent p.T508T 0.60 TCGA-BR-7707-01 15 75651719 75651720 - G MAN2C1 Frame_Shift_Ins p.H670Pfs*15 0.10 TCGA-BR-7707-01 15 75763086 75763086 T C PTPN9 Missense_Mutation p.T432A 0.09 tolerated(0.45) benign(0.354) TCGA-BR-7707-01 15 79170560 79170560 C T MORF4L1 Nonsense_Mutation p.R16* 0.70 TCGA-BR-7707-01 15 83481903 83481903 G A WHAMM Missense_Mutation p.V220I 0.57 tolerated(0.44) benign(0.158) TCGA-BR-7707-01 15 85634368 85634368 G A PDE8A Missense_Mutation p.A270T 0.19 tolerated(0.24) possibly_damaging(0.595) TCGA-BR-7707-01 15 86813174 86813174 C T AGBL1 Silent p.N575N 0.17 TCGA-BR-7707-01 15 90892168 90892168 T C GABARAPL3 Missense_Mutation p.S88G 0.08 tolerated(0.19) possibly_damaging(0.842) TCGA-BR-7707-01 15 91835608 91835608 C A SV2B Silent p.A626A 0.69 TCGA-BR-7707-01 16 11000842 11000842 T C CIITA Missense_Mutation p.L498P 0.05 deleterious(0) probably_damaging(0.997) TCGA-BR-7707-01 16 11000938 11000938 C T CIITA Missense_Mutation p.A530V 0.11 deleterious(0.04) probably_damaging(0.995) TCGA-BR-7707-01 16 11016335 11016335 T C CIITA Missense_Mutation p.V1102A 0.10 deleterious(0) benign(0.41) TCGA-BR-7707-01 16 11118742 11118742 G A CLEC16A Missense_Mutation p.V501M 0.21 deleterious(0) probably_damaging(0.972) TCGA-BR-7707-01 16 1129314 1129314 G A SSTR5 Missense_Mutation p.R149H 0.26 deleterious(0.01) benign(0.04) TCGA-BR-7707-01 16 11773600 11773600 G A TXNDC11 Silent p.S776S 0.26 TCGA-BR-7707-01 16 11873209 11873209 C T ZC3H7A Missense_Mutation p.R40H 0.20 tolerated(0.4) benign(0.001) TCGA-BR-7707-01 16 14334332 14334332 C T MKL2 Missense_Mutation p.A357V 0.08 deleterious(0) possibly_damaging(0.831) TCGA-BR-7707-01 16 14742310 14742310 A G BFAR Missense_Mutation p.N110S 0.15 tolerated(0.77) benign(0.001) TCGA-BR-7707-01 16 15133905 15133905 G A NTAN1 Missense_Mutation p.A187V 0.06 deleterious(0) possibly_damaging(0.627) TCGA-BR-7707-01 16 15198488 15198488 G A RP11-1186N24.5 3'Flank 0.25 TCGA-BR-7707-01 16 15724194 15724194 T - KIAA0430 Frame_Shift_Del p.M507Cfs*38 0.18 TCGA-BR-7707-01 16 16108453 16108453 C A ABCC1 Missense_Mutation p.L153M 0.23 deleterious(0.02) possibly_damaging(0.797) TCGA-BR-7707-01 16 1652450 1652450 G A IFT140 Missense_Mutation p.T97M 0.26 tolerated(0.1) possibly_damaging(0.553) TCGA-BR-7707-01 16 1818284 1818284 C T MAPK8IP3 Missense_Mutation p.A1215V 0.24 tolerated(0.98) benign(0.005) TCGA-BR-7707-01 16 18806789 18806789 C T ARL6IP1 Silent p.K135K 0.10 TCGA-BR-7707-01 16 19483534 19483534 C T TMC5 Missense_Mutation p.A636V 0.30 deleterious(0.04) possibly_damaging(0.688) TCGA-BR-7707-01 16 19745102 19745102 G A IQCK Missense_Mutation p.R110H 0.28 tolerated(0.47) benign(0.001) TCGA-BR-7707-01 16 2052681 2052681 C A ZNF598 Missense_Mutation p.R173L 0.15 probably_damaging(1) TCGA-BR-7707-01 16 23080573 23080573 G A USP31 Silent p.D951D 0.25 TCGA-BR-7707-01 16 23080800 23080800 G A USP31 Missense_Mutation p.R876C 0.09 deleterious(0.02) benign(0.21) TCGA-BR-7707-01 16 24950745 24950745 C - ARHGAP17 Frame_Shift_Del p.G555Vfs*43 0.35 TCGA-BR-7707-01 16 2503467 2503467 C - CCNF Frame_Shift_Del p.P550Rfs*80 0.19 TCGA-BR-7707-01 16 258086 258086 A G LUC7L Silent p.V119V 0.08 TCGA-BR-7707-01 16 27441381 27441381 G A IL21R 5'UTR 0.15 TCGA-BR-7707-01 16 27481581 27481581 G A GTF3C1 Silent p.N1554N 0.29 TCGA-BR-7707-01 16 27895882 27895882 C T GSG1L Missense_Mutation p.E159K 0.16 deleterious(0) possibly_damaging(0.647) TCGA-BR-7707-01 16 2812472 2812472 G A SRRM2 Missense_Mutation p.R648H 0.13 unknown(0) TCGA-BR-7707-01 16 2813634 2813634 C G SRRM2 Silent p.L1035L 0.10 TCGA-BR-7707-01 16 29675600 29675600 G A SPN Missense_Mutation p.G184E 0.11 deleterious(0.04) probably_damaging(0.988) TCGA-BR-7707-01 16 29996880 29996880 G A TAOK2 Missense_Mutation p.R590H 0.32 tolerated(0.06) possibly_damaging(0.655) TCGA-BR-7707-01 16 30134461 30134461 C - MAPK3 Frame_Shift_Del p.V24Sfs*8 0.25 TCGA-BR-7707-01 16 30532882 30532882 G A ITGAL Missense_Mutation p.A1137T 0.25 tolerated(0.54) benign(0.028) TCGA-BR-7707-01 16 3065718 3065718 G A CLDN6 Missense_Mutation p.A102V 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-BR-7707-01 16 31473646 31473646 C T ARMC5 Missense_Mutation p.R260C 0.26 deleterious(0) probably_damaging(0.991) TCGA-BR-7707-01 16 31477726 31477726 G A ARMC5 Missense_Mutation p.R775Q 0.19 deleterious(0.04) benign(0.024) TCGA-BR-7707-01 16 3487176 3487176 G A ZNF597 Nonsense_Mutation p.Q175* 0.26 TCGA-BR-7707-01 16 3639789 3639789 C T SLX4 Missense_Mutation p.V1284M 0.07 tolerated(0.12) possibly_damaging(0.563) TCGA-BR-7707-01 16 3705926 3705926 A G DNASE1 Missense_Mutation p.D75G 0.09 deleterious(0.02) possibly_damaging(0.845) TCGA-BR-7707-01 16 4164856 4164856 C T ADCY9 Silent p.T196T 0.07 TCGA-BR-7707-01 16 4498736 4498736 C - DNAJA3 Frame_Shift_Del p.P378Lfs*39 0.10 TCGA-BR-7707-01 16 48139203 48139203 G A ABCC12 Silent p.G840G 0.38 TCGA-BR-7707-01 16 48261862 48261862 G - ABCC11 Frame_Shift_Del p.Q84Sfs*21 0.20 TCGA-BR-7707-01 16 50106523 50106523 A C HEATR3 Missense_Mutation p.S174R 0.30 deleterious(0.01) possibly_damaging(0.611) TCGA-BR-7707-01 16 5083687 5083687 C T NAGPA Silent p.A43A 0.25 TCGA-BR-7707-01 16 5130946 5130946 G A ALG1 Splice_Site p.X321_splice 0.24 TCGA-BR-7707-01 16 53524153 53524153 A C RBL2 Missense_Mutation p.N1121H 0.10 deleterious(0) probably_damaging(0.947) TCGA-BR-7707-01 16 55363085 55363085 G A IRX6 Missense_Mutation p.A399T 0.27 tolerated(0.18) benign(0.007) TCGA-BR-7707-01 16 55363166 55363166 C T IRX6 Missense_Mutation p.P426S 0.06 tolerated(0.48) benign(0.024) TCGA-BR-7707-01 16 56966259 56966259 G A HERPUD1 Missense_Mutation p.G35S 0.17 tolerated(0.13) benign(0.014) TCGA-BR-7707-01 16 57095558 57095558 C T NLRC5 Nonsense_Mutation p.Q1367* 0.24 TCGA-BR-7707-01 16 57416243 57416243 T C CX3CL1 Missense_Mutation p.S165P 0.39 deleterious(0.04) possibly_damaging(0.786) TCGA-BR-7707-01 16 57689903 57689903 C T GPR56 Missense_Mutation p.P339L 0.08 tolerated(0.1) probably_damaging(0.915) TCGA-BR-7707-01 16 58202515 58202515 T - CSNK2A2 Frame_Shift_Del p.K171Sfs*4 0.17 TCGA-BR-7707-01 16 58617056 58617056 C T CNOT1 Silent p.Q279Q 0.08 TCGA-BR-7707-01 16 64981896 64981896 C T CDH11 Silent p.G667G 0.08 TCGA-BR-7707-01 16 65038607 65038607 C T CDH11 Missense_Mutation p.V56I 0.07 tolerated(0.12) possibly_damaging(0.78) TCGA-BR-7707-01 16 67265542 67265542 G A FHOD1 Missense_Mutation p.R795W 0.31 deleterious(0) probably_damaging(0.993) TCGA-BR-7707-01 16 67316181 67316181 A G PLEKHG4 Silent p.Q394Q 0.06 TCGA-BR-7707-01 16 67477072 67477072 A - ATP6V0D1 Frame_Shift_Del p.F164Sfs*13 0.08 TCGA-BR-7707-01 16 676075 676075 C T RAB40C Silent p.I173I 0.08 TCGA-BR-7707-01 16 67645275 67645276 - G CTCF Frame_Shift_Ins p.E182Gfs*9 0.09 TCGA-BR-7707-01 16 67660619 67660619 G A CTCF Splice_Site p.X506_splice 0.17 TCGA-BR-7707-01 16 67683857 67683857 C T RLTPR Missense_Mutation p.R690C 0.39 deleterious(0) possibly_damaging(0.872) TCGA-BR-7707-01 16 67976779 67976779 T C LCAT Missense_Mutation p.S138G 0.25 tolerated(0.07) benign(0.005) TCGA-BR-7707-01 16 69373729 69373729 A - NIP7 5'UTR p.M1? 0.12 TCGA-BR-7707-01 16 69776336 69776336 T C NOB1 Missense_Mutation p.S380G 0.25 deleterious(0) probably_damaging(0.999) TCGA-BR-7707-01 16 702537 702537 T C WDR90 Splice_Site p.X374_splice 0.36 TCGA-BR-7707-01 16 70513191 70513191 C - FUK Frame_Shift_Del p.H1015Tfs*19 0.26 TCGA-BR-7707-01 16 70841851 70841851 T C HYDIN Missense_Mutation p.K5000E 0.12 possibly_damaging(0.801) TCGA-BR-7707-01 16 70852299 70852299 G A HYDIN Silent p.C4868C 0.36 TCGA-BR-7707-01 16 72821576 72821576 C T ZFHX3 Silent p.A3533A 0.14 TCGA-BR-7707-01 16 72991508 72991508 C T ZFHX3 Missense_Mutation p.R846H 0.10 probably_damaging(0.991) TCGA-BR-7707-01 16 74526897 74526897 G A GLG1 Missense_Mutation p.L398F 0.17 deleterious(0.01) probably_damaging(0.979) TCGA-BR-7707-01 16 77334209 77334209 G T ADAMTS18 Silent p.A875A 0.28 TCGA-BR-7707-01 16 815527 815527 C - MSLN Frame_Shift_Del p.P237Rfs*75 0.25 TCGA-BR-7707-01 16 85690909 85690909 G A GSE1 Missense_Mutation p.A447T 0.07 tolerated(0.49) benign(0.083) TCGA-BR-7707-01 16 86613438 86613438 C T FOXL1 3'UTR 0.17 TCGA-BR-7707-01 16 88691140 88691141 - C ZC3H18 Frame_Shift_Ins p.R680Qfs*14 0.26 TCGA-BR-7707-01 16 88697517 88697517 A C ZC3H18 Missense_Mutation p.Q891P 0.11 tolerated_low_confidence(0.59) benign(0.084) TCGA-BR-7707-01 16 8889867 8889867 C T TMEM186 Missense_Mutation p.R195H 0.26 tolerated(0.15) benign(0.037) TCGA-BR-7707-01 16 8890042 8890042 C T TMEM186 Missense_Mutation p.G137S 0.06 deleterious(0.03) probably_damaging(1) TCGA-BR-7707-01 16 89350538 89350538 T - ANKRD11 Frame_Shift_Del p.E805Kfs*58 0.23 TCGA-BR-7707-01 16 89661935 89661935 G C CPNE7 Missense_Mutation p.G563A 0.25 deleterious(0) probably_damaging(0.995) TCGA-BR-7707-01 16 89764300 89764300 G A SPATA2L Silent p.D239D 0.23 TCGA-BR-7707-01 16 89986444 89986444 C T MC1R Missense_Mutation p.H260Y 0.07 deleterious(0.01) benign(0.35) TCGA-BR-7707-01 17 10265498 10265498 G A MYH13 Missense_Mutation p.R148C 0.06 deleterious(0) probably_damaging(0.992) TCGA-BR-7707-01 17 15215749 15215749 G A TEKT3 Missense_Mutation p.R310C 0.06 tolerated(0.31) benign(0.047) TCGA-BR-7707-01 17 1538704 1538704 C T SCARF1 Missense_Mutation p.R614Q 0.25 deleterious(0.01) probably_damaging(0.956) TCGA-BR-7707-01 17 15532509 15532509 G A TRIM16 Missense_Mutation p.A372V 0.10 tolerated(0.13) benign(0.063) TCGA-BR-7707-01 17 15644464 15644464 G A TBC1D26 Missense_Mutation p.R192H 0.18 tolerated(0.77) benign(0.001) TCGA-BR-7707-01 17 15961030 15961030 C T NCOR1 Missense_Mutation p.A2064T 0.25 benign(0.002) TCGA-BR-7707-01 17 17698552 17698552 G T RAI1 Nonsense_Mutation p.E764* 0.16 TCGA-BR-7707-01 17 18148464 18148464 C A FLII Missense_Mutation p.K1266N 0.08 deleterious_low_confidence(0.01) benign(0.046) TCGA-BR-7707-01 17 18833976 18833976 T C PRPSAP2 Missense_Mutation p.S359P 0.15 deleterious(0) probably_damaging(0.939) TCGA-BR-7707-01 17 20108263 20108263 A - SPECC1 Frame_Shift_Del p.N303Tfs*63 0.32 TCGA-BR-7707-01 17 2276761 2276761 G A SGSM2 Missense_Mutation p.S685N 0.07 tolerated(0.06) possibly_damaging(0.71) TCGA-BR-7707-01 17 2282855 2282855 C T SGSM2 3'UTR 0.21 TCGA-BR-7707-01 17 26105782 26105782 C T NOS2 Silent p.K405K 0.27 TCGA-BR-7707-01 17 26911493 26911493 G A SPAG5 Missense_Mutation p.R723W 0.06 tolerated(0.09) benign(0.035) TCGA-BR-7707-01 17 26940691 26940691 G A RP11-192H23.4 Missense_Mutation p.R31W 0.19 tolerated_low_confidence(0.09) benign(0.03) TCGA-BR-7707-01 17 27438750 27438750 A G MYO18A Silent p.G910G 0.12 TCGA-BR-7707-01 17 27963595 27963595 T C SSH2 Silent p.K524K 0.32 TCGA-BR-7707-01 17 28545192 28545192 G A SLC6A4 Silent p.S214S 0.27 TCGA-BR-7707-01 17 28791624 28791624 T C CPD Missense_Mutation p.L1312S 0.10 deleterious_low_confidence(0) possibly_damaging(0.588) TCGA-BR-7707-01 17 2966259 2966259 T C OR1D5 Missense_Mutation p.T215A 0.10 tolerated(0.05) benign(0.045) TCGA-BR-7707-01 17 29848367 29848367 G A RAB11FIP4 Silent p.S249S 0.28 TCGA-BR-7707-01 17 33954489 33954489 A G AP2B1 Missense_Mutation p.M342V 0.30 deleterious(0) benign(0.292) TCGA-BR-7707-01 17 34106043 34106043 G T MMP28 Silent p.G76G 0.23 TCGA-BR-7707-01 17 35580491 35580491 T A ACACA Missense_Mutation p.D1169V 0.28 deleterious(0) probably_damaging(0.999) TCGA-BR-7707-01 17 36720452 36720452 G A SRCIN1 Missense_Mutation p.S148L 0.38 deleterious(0) probably_damaging(0.978) TCGA-BR-7707-01 17 37902041 37902041 G A GRB7 Missense_Mutation p.A447T 0.33 tolerated(0.06) benign(0.056) TCGA-BR-7707-01 17 38133118 38133118 T C GSDMA Missense_Mutation p.F382S 0.27 tolerated(0.06) probably_damaging(0.933) TCGA-BR-7707-01 17 38711960 38711960 T C CCR7 Silent p.K57K 0.11 TCGA-BR-7707-01 17 38792670 38792670 A C SMARCE1 Missense_Mutation p.L116V 0.10 tolerated(0.28) benign(0) TCGA-BR-7707-01 17 38953225 38953225 G A KRT28 Silent p.T307T 0.27 TCGA-BR-7707-01 17 39092710 39092710 G A KRT23 Missense_Mutation p.T49M 0.20 tolerated(0.13) possibly_damaging(0.466) TCGA-BR-7707-01 17 39197254 39197254 G - KRTAP1-1 Frame_Shift_Del p.C133Afs*4 0.20 TCGA-BR-7707-01 17 39197586 39197586 A G KRTAP1-1 Missense_Mutation p.S22P 0.09 tolerated(0.5) possibly_damaging(0.637) TCGA-BR-7707-01 17 39622023 39622023 A G KRT32 Splice_Site p.X236_splice 0.06 TCGA-BR-7707-01 17 3962504 3962504 A - ZZEF1 Frame_Shift_Del p.L1655Wfs*11 0.22 TCGA-BR-7707-01 17 39723536 39723536 A G KRT9 Missense_Mutation p.S621P 0.15 unknown(0) TCGA-BR-7707-01 17 40120397 40120397 G A CNP Silent p.E105E 0.11 TCGA-BR-7707-01 17 40312256 40312256 C T KCNH4 Silent p.T952T 0.07 TCGA-BR-7707-01 17 40821461 40821463 AGG - PLEKHH3 In_Frame_Del p.L731del 0.16 TCGA-BR-7707-01 17 41585055 41585055 A G DHX8 Missense_Mutation p.K703R 0.07 deleterious(0.03) benign(0.139) TCGA-BR-7707-01 17 41960294 41960294 G A MPP2 Missense_Mutation p.R144C 0.08 deleterious(0) probably_damaging(0.956) TCGA-BR-7707-01 17 42337271 42337271 C - SLC4A1 Frame_Shift_Del p.G172Vfs*2 0.26 TCGA-BR-7707-01 17 42461924 42461924 C T ITGA2B Missense_Mutation p.G277R 0.26 deleterious(0.03) benign(0.031) TCGA-BR-7707-01 17 42837183 42837183 G A ADAM11 Missense_Mutation p.R52H 0.45 deleterious(0) probably_damaging(1) TCGA-BR-7707-01 17 42855087 42855087 C T ADAM11 Silent p.D642D 0.27 TCGA-BR-7707-01 17 43345039 43345039 T C MAP3K14-AS1 RNA 0.09 TCGA-BR-7707-01 17 4348354 4348354 C T SPNS3 Missense_Mutation p.A98V 0.31 deleterious(0.03) probably_damaging(0.988) TCGA-BR-7707-01 17 45727597 45727597 C T KPNB1 5'UTR 0.27 TCGA-BR-7707-01 17 45993853 45993853 A G SP2 Missense_Mutation p.Q139R 0.11 deleterious(0) probably_damaging(0.99) TCGA-BR-7707-01 17 46002400 46002400 C T SP2 Silent p.P496P 0.12 TCGA-BR-7707-01 17 4701657 4701657 G A PSMB6 Silent p.R220R 0.06 TCGA-BR-7707-01 17 47918915 47918915 T - TAC4 Frame_Shift_Del p.A84Hfs*101 0.11 TCGA-BR-7707-01 17 48472334 48472334 C T LRRC59 Missense_Mutation p.A41T 0.12 tolerated(0.07) possibly_damaging(0.643) TCGA-BR-7707-01 17 48632944 48632944 C T SPATA20 Missense_Mutation p.T777I 0.16 deleterious(0) probably_damaging(0.964) TCGA-BR-7707-01 17 48692826 48692826 G A CACNA1G Missense_Mutation p.G1622R 0.23 tolerated(0.06) probably_damaging(0.993) TCGA-BR-7707-01 17 48703460 48703460 C T CACNA1G Missense_Mutation p.P2161L 0.29 deleterious_low_confidence(0.02) benign(0) TCGA-BR-7707-01 17 4910366 4910366 T C KIF1C Missense_Mutation p.M441T 0.27 deleterious(0.02) benign(0.227) TCGA-BR-7707-01 17 51902173 51902173 A C KIF2B Missense_Mutation p.K593N 0.06 tolerated(0.16) benign(0.007) TCGA-BR-7707-01 17 53077036 53077036 G A STXBP4 Missense_Mutation p.D111N 0.19 tolerated(0.31) benign(0.071) TCGA-BR-7707-01 17 56389881 56389881 A G BZRAP1 Silent p.P767P 0.18 TCGA-BR-7707-01 17 56389972 56389972 C G BZRAP1 Missense_Mutation p.S737T 0.09 deleterious(0.03) benign(0.253) TCGA-BR-7707-01 17 56424934 56424934 A G SUPT4H1 Missense_Mutation p.M63T 0.09 deleterious(0.03) possibly_damaging(0.87) TCGA-BR-7707-01 17 56435161 56435161 C - RNF43 Frame_Shift_Del p.G659Vfs*41 0.17 TCGA-BR-7707-01 17 57157162 57157164 ATC - TRIM37 In_Frame_Del p.M189del 0.08 TCGA-BR-7707-01 17 62551006 62551006 A G SMURF2 Silent p.P572P 0.08 TCGA-BR-7707-01 17 6387013 6387014 - C PITPNM3 Frame_Shift_Ins p.N138Kfs*52 0.10 TCGA-BR-7707-01 17 64049989 64049989 A G CEP112 Silent p.N361N 0.07 TCGA-BR-7707-01 17 650620 650620 G A GEMIN4 Silent p.R221R 0.29 TCGA-BR-7707-01 17 6531749 6531749 T C KIAA0753 Missense_Mutation p.K136E 0.22 tolerated(0.09) probably_damaging(0.986) TCGA-BR-7707-01 17 65888143 65888143 G A BPTF Missense_Mutation p.G683D 0.36 possibly_damaging(0.714) TCGA-BR-7707-01 17 66982372 66982372 G A ABCA9 Nonsense_Mutation p.Q1381* 0.30 TCGA-BR-7707-01 17 67170783 67170783 C A ABCA10 Nonsense_Mutation p.G1005* 0.07 TCGA-BR-7707-01 17 6718526 6718526 T C TEKT1 Silent p.S195S 0.07 TCGA-BR-7707-01 17 67210857 67210857 G A ABCA10 Nonsense_Mutation p.R332* 0.09 TCGA-BR-7707-01 17 70943934 70943934 A G SLC39A11 Silent p.G129G 0.07 TCGA-BR-7707-01 17 71281599 71281599 A G CDC42EP4 Silent p.D347D 0.09 TCGA-BR-7707-01 17 71380095 71380095 C T SDK2 Missense_Mutation p.R1542Q 0.11 tolerated(0.08) possibly_damaging(0.613) TCGA-BR-7707-01 17 71398134 71398134 G A SDK2 Silent p.P877P 0.38 TCGA-BR-7707-01 17 7155822 7155822 A G ELP5 Translation_Start_Site p.M1? 0.14 tolerated_low_confidence(1) benign(0) TCGA-BR-7707-01 17 72945440 72945440 G A OTOP3 Missense_Mutation p.G574S 0.08 tolerated(0.11) probably_damaging(1) TCGA-BR-7707-01 17 73126544 73126544 C A NT5C 3'UTR 0.38 TCGA-BR-7707-01 17 7329644 7329644 T C C17orf74 Missense_Mutation p.F112L 0.34 tolerated(1) possibly_damaging(0.682) TCGA-BR-7707-01 17 73555338 73555338 C - LLGL2 Frame_Shift_Del p.S128Vfs*78 0.19 TCGA-BR-7707-01 17 73568034 73568034 C T LLGL2 Silent p.D783D 0.12 TCGA-BR-7707-01 17 7365271 7365271 G A ZBTB4 Silent p.G1010G 0.15 TCGA-BR-7707-01 17 73747158 73747158 C T ITGB4 Silent p.Y1253Y 0.24 TCGA-BR-7707-01 17 73753657 73753657 G A ITGB4 3'UTR 0.23 TCGA-BR-7707-01 17 73916363 73916363 C T FBF1 Missense_Mutation p.E593K 0.30 deleterious(0) possibly_damaging(0.501) TCGA-BR-7707-01 17 73946860 73946860 C T ACOX1 Silent p.T431T 0.32 TCGA-BR-7707-01 17 74011054 74011054 C T EVPL Missense_Mutation p.R722H 0.14 deleterious(0.03) probably_damaging(0.912) TCGA-BR-7707-01 17 74278023 74278023 C T QRICH2 Silent p.R1229R 0.17 TCGA-BR-7707-01 17 74566696 74566696 A T ST6GALNAC2 Missense_Mutation p.S242T 0.10 probably_damaging(0.973) TCGA-BR-7707-01 17 7578535 7578537 TTG - TP53 In_Frame_Del p.N131del 0.17 TCGA-BR-7707-01 17 76089061 76089061 A G TNRC6C Missense_Mutation p.I1337V 0.08 tolerated(0.8) benign(0.007) TCGA-BR-7707-01 17 76548815 76548815 A G DNAH17 Silent p.L751L 0.09 TCGA-BR-7707-01 17 7695578 7695578 A G DNAH2 Silent p.V2354V 0.08 TCGA-BR-7707-01 17 77076406 77076406 G A ENGASE Missense_Mutation p.R228H 0.25 tolerated(0.18) benign(0.075) TCGA-BR-7707-01 17 7721318 7721318 G A DNAH2 Missense_Mutation p.A3431T 0.10 probably_damaging(0.962) TCGA-BR-7707-01 17 7750893 7750893 G A KDM6B Silent p.A429A 0.37 TCGA-BR-7707-01 17 77809003 77809003 C T CBX4 Silent p.K146K 0.12 TCGA-BR-7707-01 17 7807305 7807305 A G CHD3 Missense_Mutation p.D1356G 0.04 possibly_damaging(0.822) TCGA-BR-7707-01 17 7813856 7813856 C T CHD3 Missense_Mutation p.R1960C 0.13 possibly_damaging(0.898) TCGA-BR-7707-01 17 78269393 78269393 G A RNF213 Missense_Mutation p.V598M 0.24 benign(0.001) TCGA-BR-7707-01 17 78324139 78324139 T - RNF213 Frame_Shift_Del p.Q3378Rfs*22 0.11 TCGA-BR-7707-01 17 78599517 78599517 T C RPTOR Silent p.V63V 0.08 TCGA-BR-7707-01 17 79094124 79094124 C T AATK Silent p.A1204A 0.15 TCGA-BR-7707-01 17 79173252 79173252 C T AZI1 Missense_Mutation p.R374Q 0.30 tolerated(0.28) benign(0.001) TCGA-BR-7707-01 17 79512907 79512907 G A C17orf70 Silent p.G725G 0.29 TCGA-BR-7707-01 17 79612316 79612317 - G TSPAN10 Frame_Shift_Ins p.P115Afs*31 0.19 TCGA-BR-7707-01 17 79803437 79803437 C T P4HB Silent p.T453T 0.31 TCGA-BR-7707-01 17 80006940 80006940 G A RFNG Missense_Mutation p.A294V 0.21 tolerated(0.11) benign(0.02) TCGA-BR-7707-01 17 80059604 80059604 C T FASN 5'Flank 0.08 TCGA-BR-7707-01 17 80213367 80213367 G T CSNK1D Missense_Mutation p.L92I 0.11 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-BR-7707-01 17 80274772 80274772 C T CD7 Silent p.G56G 0.07 TCGA-BR-7707-01 17 80861301 80861301 C T TBCD Missense_Mutation p.A584V 0.20 deleterious(0.02) benign(0.017) TCGA-BR-7707-01 17 8638542 8638542 C T CCDC42 Missense_Mutation p.A249T 0.22 tolerated(0.33) probably_damaging(0.993) TCGA-BR-7707-01 18 10468632 10468632 C T APCDD1 Silent p.G75G 0.09 TCGA-BR-7707-01 18 10671636 10671636 A - PIEZO2 Frame_Shift_Del p.L2716* 0.11 TCGA-BR-7707-01 18 13884951 13884951 G A MC2R Silent p.I189I 0.09 TCGA-BR-7707-01 18 14782566 14782566 C A ANKRD30B Missense_Mutation p.P508H 0.26 deleterious(0.01) possibly_damaging(0.85) TCGA-BR-7707-01 18 2700817 2700817 T C SMCHD1 Silent p.N516N 0.12 TCGA-BR-7707-01 18 28581620 28581620 A G DSC3 Silent p.I733I 0.06 TCGA-BR-7707-01 18 28965115 28965115 A G DSG4 Missense_Mutation p.N22S 0.10 tolerated(0.62) benign(0.164) TCGA-BR-7707-01 18 29522637 29522637 G A TRAPPC8 Missense_Mutation p.L31F 0.30 deleterious(0.03) possibly_damaging(0.58) TCGA-BR-7707-01 18 30092428 30092428 C - WBP11P1 RNA 0.09 TCGA-BR-7707-01 18 31326067 31326067 T - ASXL3 Frame_Shift_Del p.F2086Lfs*5 0.10 TCGA-BR-7707-01 18 31326458 31326458 C T ASXL3 Missense_Mutation p.R2216W 0.17 probably_damaging(1) TCGA-BR-7707-01 18 32455306 32455306 C T DTNA Missense_Mutation p.T529M 0.29 tolerated(0.11) benign(0.027) TCGA-BR-7707-01 18 33706548 33706548 C T SLC39A6 Silent p.K141K 0.15 TCGA-BR-7707-01 18 33726340 33726340 A G ELP2 Missense_Mutation p.N439S 0.17 tolerated(0.12) benign(0.016) TCGA-BR-7707-01 18 34261481 34261482 GA - FHOD3 Frame_Shift_Del p.E467Rfs*42 0.09 TCGA-BR-7707-01 18 3729198 3729198 A G DLGAP1 Missense_Mutation p.S510P 0.30 tolerated(0.47) benign(0.127) TCGA-BR-7707-01 18 47311699 47311699 T C ACAA2 Missense_Mutation p.Q326R 0.12 deleterious(0) probably_damaging(1) TCGA-BR-7707-01 18 55020026 55020026 G A ST8SIA3 5'UTR 0.35 TCGA-BR-7707-01 18 55315637 55315638 CA - ATP8B1 3'UTR 0.36 TCGA-BR-7707-01 18 56246941 56246941 A - ALPK2 Frame_Shift_Del p.L356Yfs*2 0.24 TCGA-BR-7707-01 18 56651464 56651464 C T ZNF532 Silent p.I1224I 0.09 TCGA-BR-7707-01 18 5891806 5891806 C - TMEM200C Frame_Shift_Del p.G86Vfs*176 0.17 TCGA-BR-7707-01 18 61305030 61305030 T C SERPINB4 Missense_Mutation p.N366D 0.08 tolerated(1) benign(0.009) TCGA-BR-7707-01 18 61649053 61649053 G A SERPINB8 Nonsense_Mutation p.W135* 0.08 TCGA-BR-7707-01 18 64211957 64211957 T - CDH19 Frame_Shift_Del p.K320Rfs*27 0.17 TCGA-BR-7707-01 18 66350180 66350180 A G TMX3 Missense_Mutation p.I296T 0.09 deleterious(0) probably_damaging(0.93) TCGA-BR-7707-01 18 6999505 6999505 G T LAMA1 Silent p.A1534A 0.33 TCGA-BR-7707-01 18 70205584 70205584 G T CBLN2 Missense_Mutation p.P168T 0.09 tolerated(0.09) probably_damaging(0.93) TCGA-BR-7707-01 18 71740785 71740785 T A FBXO15 Missense_Mutation p.I482F 0.08 tolerated(0.13) benign(0.025) TCGA-BR-7707-01 18 7567873 7567873 G A PTPRM Silent p.A19A 0.25 TCGA-BR-7707-01 18 76754750 76754750 C T SALL3 Missense_Mutation p.P920L 0.32 deleterious(0.03) probably_damaging(0.999) TCGA-BR-7707-01 18 8720350 8720350 A G SOGA2 Silent p.V71V 0.09 TCGA-BR-7707-01 18 9944964 9944964 G A VAPA Missense_Mutation p.S154N 0.17 tolerated(0.44) benign(0.001) TCGA-BR-7707-01 19 10203376 10203376 G A ANGPTL6 Silent p.H434H 0.24 TCGA-BR-7707-01 19 10463616 10463616 G A TYK2 Silent p.D1062D 0.09 TCGA-BR-7707-01 19 10610476 10610476 G A KEAP1 Silent p.D78D 0.21 TCGA-BR-7707-01 19 1095303 1095303 C G POLR2E Missense_Mutation p.E4D 0.10 tolerated(0.38) benign(0.015) TCGA-BR-7707-01 19 11408917 11408917 G A TSPAN16 Missense_Mutation p.V57I 0.27 tolerated(1) benign(0.019) TCGA-BR-7707-01 19 11471930 11471930 C T DKFZP761J1410 Silent p.F118F 0.32 TCGA-BR-7707-01 19 11687099 11687099 C T ACP5 Missense_Mutation p.G232R 0.12 tolerated(0.37) benign(0.013) TCGA-BR-7707-01 19 12058330 12058330 A G ZNF700 Silent p.G64G 0.08 TCGA-BR-7707-01 19 12769060 12769060 C T MAN2B1 Missense_Mutation p.R403H 0.32 deleterious(0) probably_damaging(0.984) TCGA-BR-7707-01 19 12939514 12939514 C - RTBDN Frame_Shift_Del p.V140Yfs*155 0.21 TCGA-BR-7707-01 19 13919924 13919924 G A ZSWIM4 Missense_Mutation p.R301H 0.12 deleterious(0) possibly_damaging(0.715) TCGA-BR-7707-01 19 1398958 1398959 - C GAMT Frame_Shift_Ins p.E176Gfs*15 0.23 TCGA-BR-7707-01 19 14269224 14269224 C T LPHN1 Missense_Mutation p.A769T 0.07 tolerated(0.48) probably_damaging(0.945) TCGA-BR-7707-01 19 15132166 15132166 G A CCDC105 Silent p.A292A 0.25 TCGA-BR-7707-01 19 15296358 15296358 G - NOTCH3 Frame_Shift_Del p.P695Rfs*165 0.31 TCGA-BR-7707-01 19 16000370 16000370 G A CYP4F2 Missense_Mutation p.R261C 0.13 deleterious(0.03) benign(0.052) TCGA-BR-7707-01 19 16040401 16040401 G A CYP4F11 Missense_Mutation p.T70M 0.11 tolerated(0.05) benign(0.223) TCGA-BR-7707-01 19 16688383 16688383 C T MED26 Silent p.P86P 0.24 TCGA-BR-7707-01 19 16791318 16791318 C T TMEM38A Missense_Mutation p.A131V 0.11 tolerated(1) probably_damaging(1) TCGA-BR-7707-01 19 17179875 17179875 C T HAUS8 Missense_Mutation p.R38Q 0.12 deleterious(0) probably_damaging(0.99) TCGA-BR-7707-01 19 17396335 17396335 C T ANKLE1 Missense_Mutation p.T491M 0.04 deleterious(0.04) probably_damaging(0.985) TCGA-BR-7707-01 19 17922546 17922546 T C B3GNT3 Missense_Mutation p.I245T 0.07 deleterious(0) possibly_damaging(0.886) TCGA-BR-7707-01 19 18967788 18967788 G A UPF1 Missense_Mutation p.E643K 0.09 deleterious(0) probably_damaging(1) TCGA-BR-7707-01 19 19035782 19035782 C A DDX49 Missense_Mutation p.R341S 0.28 deleterious(0) probably_damaging(0.998) TCGA-BR-7707-01 19 19360629 19360629 A G NCAN Missense_Mutation p.Q1292R 0.18 tolerated(0.23) benign(0.419) TCGA-BR-7707-01 19 2099012 2099013 AG - IZUMO4 Frame_Shift_Del p.R198Sfs*29 0.23 TCGA-BR-7707-01 19 22000730 22000730 C A ZNF43 Missense_Mutation p.W63C 0.05 deleterious(0.02) benign(0.014) TCGA-BR-7707-01 19 22193695 22193695 C T ZNF208 5'UTR 0.27 TCGA-BR-7707-01 19 22785471 22785471 C T AC011467.1 5'Flank 0.17 TCGA-BR-7707-01 19 22836737 22836737 A C ZNF492 Missense_Mutation p.K17T 0.09 deleterious(0.01) possibly_damaging(0.727) TCGA-BR-7707-01 19 2290137 2290137 C T LINGO3 Missense_Mutation p.V547M 0.27 deleterious(0.01) benign(0.156) TCGA-BR-7707-01 19 2991927 2991927 G T TLE6 Missense_Mutation p.R444L 0.26 deleterious(0) probably_damaging(0.988) TCGA-BR-7707-01 19 3005947 3005947 C T TLE2 Missense_Mutation p.R507H 0.26 deleterious(0.01) probably_damaging(0.969) TCGA-BR-7707-01 19 33353425 33353425 C T SLC7A9 Silent p.A182A 0.31 TCGA-BR-7707-01 19 34263385 34263385 G A CHST8 Missense_Mutation p.S231N 0.18 tolerated(0.87) benign(0.002) TCGA-BR-7707-01 19 35550829 35550829 G A HPN Silent p.T114T 0.50 TCGA-BR-7707-01 19 35769944 35769944 G A USF2 Silent p.R306R 0.38 TCGA-BR-7707-01 19 35800865 35800865 G A MAG Silent p.P440P 0.06 TCGA-BR-7707-01 19 36235042 36235042 C A U2AF1L4 Missense_Mutation p.R79L 0.27 tolerated(0.06) benign(0.123) TCGA-BR-7707-01 19 36278199 36278199 T C ARHGAP33 Missense_Mutation p.V750A 0.33 tolerated_low_confidence(0.43) probably_damaging(0.977) TCGA-BR-7707-01 19 36727780 36727780 T C ZNF146 Silent p.H146H 0.07 TCGA-BR-7707-01 19 37367968 37367968 G A ZNF345 Missense_Mutation p.R79Q 0.29 tolerated(0.88) benign(0.004) TCGA-BR-7707-01 19 37903706 37903706 G T ZNF569 Missense_Mutation p.S618R 0.21 tolerated(0.24) probably_damaging(0.99) TCGA-BR-7707-01 19 39330958 39330959 - G HNRNPL Frame_Shift_Ins p.P338Tfs*56 0.24 TCGA-BR-7707-01 19 3977944 3977944 C T EEF2 Missense_Mutation p.R647H 0.34 deleterious(0) probably_damaging(0.991) TCGA-BR-7707-01 19 40541822 40541822 C T ZNF780B Missense_Mutation p.R315Q 0.07 tolerated(0.26) benign(0.017) TCGA-BR-7707-01 19 41209479 41209479 C T ADCK4 Missense_Mutation p.A256T 0.10 tolerated(0.74) benign(0.304) TCGA-BR-7707-01 19 41630643 41630643 C T CYP2F1 Silent p.I328I 0.17 TCGA-BR-7707-01 19 41700534 41700534 G A CYP2S1 Missense_Mutation p.R88Q 0.19 tolerated(0.15) benign(0.034) TCGA-BR-7707-01 19 41743896 41743896 C - AXL Frame_Shift_Del p.P279Qfs*18 0.31 TCGA-BR-7707-01 19 41808818 41808818 G - HNRNPUL1 Frame_Shift_Del p.G647Efs*268 0.08 TCGA-BR-7707-01 19 42489240 42489240 C T ATP1A3 Missense_Mutation p.A288T 0.10 deleterious(0.03) probably_damaging(0.999) TCGA-BR-7707-01 19 42880243 42880243 C T MEGF8 Silent p.G2551G 0.28 TCGA-BR-7707-01 19 43376071 43376071 C T PSG1 Missense_Mutation p.S186N 0.26 tolerated(0.08) benign(0.045) TCGA-BR-7707-01 19 43859890 43859890 A G CD177 3'UTR 0.23 TCGA-BR-7707-01 19 44057061 44057061 C A XRCC1 Splice_Site p.X238_splice 0.16 TCGA-BR-7707-01 19 44500799 44500799 G T ZNF155 Missense_Mutation p.A275S 0.12 tolerated(0.06) benign(0.281) TCGA-BR-7707-01 19 45179597 45179597 C T CEACAM19 Missense_Mutation p.A160V 0.28 tolerated(0.39) benign(0.041) TCGA-BR-7707-01 19 46176148 46176148 G A GIPR Missense_Mutation p.G107D 0.13 deleterious(0) probably_damaging(0.992) TCGA-BR-7707-01 19 46280967 46280967 C T DMPK Silent p.A290A 0.09 TCGA-BR-7707-01 19 46915642 46915642 G A CCDC8 Silent p.S142S 0.16 TCGA-BR-7707-01 19 47422062 47422062 C T ARHGAP35 Missense_Mutation p.R44C 0.08 deleterious(0) probably_damaging(0.999) TCGA-BR-7707-01 19 49642973 49642973 G A PPFIA3 Missense_Mutation p.A709T 0.23 tolerated(1) benign(0.08) TCGA-BR-7707-01 19 50099565 50099565 C T PRR12 Missense_Mutation p.A658V 0.41 possibly_damaging(0.695) TCGA-BR-7707-01 19 50189959 50189959 C T PRMT1 Silent p.G336G 0.09 TCGA-BR-7707-01 19 50191558 50191558 C T PRMT1 3'UTR 0.25 TCGA-BR-7707-01 19 50249873 50249873 G A TSKS Silent p.C282C 0.23 TCGA-BR-7707-01 19 5032920 5032920 G A KDM4B Missense_Mutation p.G7S 0.26 benign(0.003) TCGA-BR-7707-01 19 50794294 50794294 C T MYH14 Missense_Mutation p.R1706C 0.27 deleterious(0) probably_damaging(0.91) TCGA-BR-7707-01 19 50905323 50905324 - G POLD1 Frame_Shift_Ins p.R180Efs*72 0.25 TCGA-BR-7707-01 19 50910265 50910265 G A POLD1 Missense_Mutation p.R507H 0.09 deleterious(0) probably_damaging(0.999) TCGA-BR-7707-01 19 51021034 51021034 C T LRRC4B Missense_Mutation p.G646R 0.35 tolerated_low_confidence(0.3) possibly_damaging(0.483) TCGA-BR-7707-01 19 51273872 51273872 G A GPR32 Silent p.S5S 0.13 TCGA-BR-7707-01 19 5131974 5131974 G A KDM4B Missense_Mutation p.R621Q 0.25 possibly_damaging(0.602) TCGA-BR-7707-01 19 51330229 51330229 G A KLK15 Missense_Mutation p.T129M 0.36 tolerated(0.06) benign(0.179) TCGA-BR-7707-01 19 5144151 5144151 G - KDM4B Frame_Shift_Del p.G910Vfs*7 0.27 TCGA-BR-7707-01 19 52130718 52130718 G T SIGLEC5 Missense_Mutation p.Q427K 0.28 deleterious(0) benign(0.001) TCGA-BR-7707-01 19 5214592 5214592 G A PTPRS Missense_Mutation p.R1492W 0.23 deleterious(0) probably_damaging(0.991) TCGA-BR-7707-01 19 52469195 52469195 G A ZNF350 Nonsense_Mutation p.R171* 0.20 TCGA-BR-7707-01 19 52618898 52618898 G A ZNF616 Missense_Mutation p.R507C 0.15 tolerated(0.2) benign(0.063) TCGA-BR-7707-01 19 52620202 52620202 A G ZNF616 Missense_Mutation p.V72A 0.13 tolerated(0.54) benign(0.134) TCGA-BR-7707-01 19 53116634 53116634 T C ZNF83 Missense_Mutation p.H395R 0.09 deleterious(0.01) probably_damaging(0.96) TCGA-BR-7707-01 19 53367219 53367219 A G CTD-2331H12.5 5'Flank 0.14 TCGA-BR-7707-01 19 54182284 54182284 G T MIR515-1 RNA 0.10 TCGA-BR-7707-01 19 54822903 54822903 G A LILRA5 Missense_Mutation p.R165W 0.09 tolerated(0.54) benign(0) TCGA-BR-7707-01 19 54848764 54848764 G A LILRA4 Missense_Mutation p.R287C 0.27 tolerated(0.13) possibly_damaging(0.846) TCGA-BR-7707-01 19 55401033 55401033 A G FCAR Missense_Mutation p.Y223C 0.08 deleterious(0) possibly_damaging(0.838) TCGA-BR-7707-01 19 55899400 55899400 G A RPL28 Missense_Mutation p.R103H 0.10 deleterious(0.02) benign(0.381) TCGA-BR-7707-01 19 56166473 56166473 G A U2AF2 Translation_Start_Site p.M1? 0.12 deleterious_low_confidence(0) possibly_damaging(0.885) TCGA-BR-7707-01 19 56599515 56599515 G A ZNF787 Silent p.G342G 0.14 TCGA-BR-7707-01 19 57133439 57133439 C T ZNF71 Missense_Mutation p.R262C 0.17 deleterious(0) probably_damaging(0.999) TCGA-BR-7707-01 19 57286450 57286450 G T ZIM2 Missense_Mutation p.A397E 0.19 deleterious(0.03) benign(0.081) TCGA-BR-7707-01 19 57765778 57765778 A G ZNF805 Missense_Mutation p.I531V 0.07 tolerated(0.69) benign(0.02) TCGA-BR-7707-01 19 57840273 57840273 C T ZNF543 Silent p.C481C 0.10 TCGA-BR-7707-01 19 58867479 58867479 G A ZNF497 3'UTR 0.43 TCGA-BR-7707-01 19 59028928 59028928 C T ZBTB45 Missense_Mutation p.R38H 0.31 tolerated(0.25) possibly_damaging(0.873) TCGA-BR-7707-01 19 6042100 6042100 A G RFX2 Missense_Mutation p.V72A 0.17 deleterious(0.04) possibly_damaging(0.5) TCGA-BR-7707-01 19 691994 691994 C T PRSS57 Missense_Mutation p.R82H 0.25 tolerated(0.13) benign(0.01) TCGA-BR-7707-01 19 7591468 7591468 G T MCOLN1 Missense_Mutation p.Q127H 0.27 deleterious(0.03) possibly_damaging(0.615) TCGA-BR-7707-01 19 7675435 7675435 C A CAMSAP3 Silent p.A305A 0.24 TCGA-BR-7707-01 19 7965708 7965709 - G LRRC8E Frame_Shift_Ins p.L770Afs*37 0.15 TCGA-BR-7707-01 19 7975006 7975006 G - MAP2K7 Frame_Shift_Del p.G110Afs*62 0.29 TCGA-BR-7707-01 19 8171075 8171075 C - FBN3 Frame_Shift_Del p.G1577Vfs*72 0.23 TCGA-BR-7707-01 19 8595150 8595150 C T MYO1F Missense_Mutation p.R753H 0.09 deleterious(0.03) benign(0.3) TCGA-BR-7707-01 19 8807821 8807821 C T ACTL9 Missense_Mutation p.V411M 0.17 deleterious(0) probably_damaging(0.999) TCGA-BR-7707-01 19 902066 902066 G A R3HDM4 Missense_Mutation p.R46W 0.16 deleterious(0) probably_damaging(0.999) TCGA-BR-7707-01 19 9296577 9296577 G A OR7D2 Silent p.L40L 0.22 TCGA-BR-7707-01 19 9406947 9406947 A G ZNF699 Missense_Mutation p.L378P 0.09 deleterious(0) probably_damaging(0.997) TCGA-BR-7707-01 19 9639131 9639131 T G ZNF426 Missense_Mutation p.K530N 0.12 deleterious(0) probably_damaging(0.999) TCGA-BR-7707-01 1 100379236 100379236 C T AGL Missense_Mutation p.A1368V 0.36 deleterious(0) probably_damaging(0.99) TCGA-BR-7707-01 1 101203693 101203694 AA - VCAM1 Frame_Shift_Del p.K692Rfs*6 0.19 TCGA-BR-7707-01 1 101704655 101704655 G A S1PR1 Missense_Mutation p.A39T 0.29 tolerated(0.61) benign(0) TCGA-BR-7707-01 1 10714074 10714074 G T CASZ1 Silent p.T680T 0.24 TCGA-BR-7707-01 1 108417568 108417568 T G VAV3 Missense_Mutation p.E92D 0.11 tolerated(0.43) benign(0.002) TCGA-BR-7707-01 1 109359778 109359778 C T AKNAD1 Missense_Mutation p.M757I 0.42 tolerated(0.32) benign(0.013) TCGA-BR-7707-01 1 110466431 110466431 C - CSF1 Frame_Shift_Del p.P398Rfs*79 0.07 TCGA-BR-7707-01 1 110561031 110561031 G A AHCYL1 Missense_Mutation p.R387H 0.25 deleterious(0.02) benign(0.022) TCGA-BR-7707-01 1 110754251 110754251 G A KCNC4 Missense_Mutation p.G44S 0.08 deleterious(0) probably_damaging(1) TCGA-BR-7707-01 1 111734909 111734909 G A DENND2D Silent p.A275A 0.22 TCGA-BR-7707-01 1 112002112 112002112 C T ATP5F1 Missense_Mutation p.R183W 0.07 deleterious(0.03) benign(0.123) TCGA-BR-7707-01 1 113460046 113460046 G A SLC16A1 Nonsense_Mutation p.R328* 0.34 TCGA-BR-7707-01 1 114196613 114196613 A G MAGI3 Missense_Mutation p.T868A 0.06 deleterious(0) probably_damaging(0.999) TCGA-BR-7707-01 1 114380697 114380697 A G PTPN22 Missense_Mutation p.V442A 0.11 tolerated(1) benign(0.001) TCGA-BR-7707-01 1 114438057 114438057 G T AP4B1 Missense_Mutation p.A617D 0.29 tolerated(0.13) benign(0.001) TCGA-BR-7707-01 1 117487474 117487474 G A PTGFRN Missense_Mutation p.A198T 0.31 tolerated(0.84) benign(0.01) TCGA-BR-7707-01 1 117552499 117552499 T C CD101 Missense_Mutation p.V24A 0.07 deleterious(0) probably_damaging(0.999) TCGA-BR-7707-01 1 11852364 11852364 G A MTHFR Missense_Mutation p.R535W 0.26 deleterious(0) benign(0.055) TCGA-BR-7707-01 1 11898430 11898430 C T CLCN6 Silent p.A778A 0.10 TCGA-BR-7707-01 1 12052705 12052705 A G MFN2 Missense_Mutation p.E90G 0.20 deleterious(0) probably_damaging(0.99) TCGA-BR-7707-01 1 13942443 13942443 A - PDPN 3'UTR 0.14 TCGA-BR-7707-01 1 147091769 147091769 G A BCL9 Missense_Mutation p.R603Q 0.21 tolerated(0.08) probably_damaging(0.945) TCGA-BR-7707-01 1 150234562 150234563 CT - CA14 Frame_Shift_Del p.L90Afs*38 0.12 TCGA-BR-7707-01 1 151266555 151266555 C T PI4KB Silent p.G748G 0.23 TCGA-BR-7707-01 1 151316207 151316207 A G RFX5 Missense_Mutation p.I236T 0.07 deleterious(0) probably_damaging(0.987) TCGA-BR-7707-01 1 151336943 151336944 AG - SELENBP1 3'UTR 0.20 TCGA-BR-7707-01 1 151546762 151546762 A G TUFT1 Missense_Mutation p.Y204C 0.14 tolerated(0.13) benign(0.238) TCGA-BR-7707-01 1 151774279 151774279 C T LINGO4 Missense_Mutation p.R301Q 0.36 deleterious(0.02) probably_damaging(0.988) TCGA-BR-7707-01 1 152487940 152487940 G A CRCT1 Silent p.P27P 0.29 TCGA-BR-7707-01 1 152636751 152636751 G A LCE2D Missense_Mutation p.G57D 0.04 tolerated_low_confidence(0.19) unknown(0) TCGA-BR-7707-01 1 152857092 152857092 G A SMCP Missense_Mutation p.C65Y 0.13 deleterious(0) possibly_damaging(0.588) TCGA-BR-7707-01 1 153279700 153279700 C T PGLYRP3 Silent p.P33P 0.20 TCGA-BR-7707-01 1 155150501 155150501 G - TRIM46 Frame_Shift_Del p.E312Rfs*107 0.14 TCGA-BR-7707-01 1 155207185 155207185 G A GBA Missense_Mutation p.R316C 0.13 deleterious(0.02) possibly_damaging(0.464) TCGA-BR-7707-01 1 155327459 155327459 T C ASH1L Missense_Mutation p.K2293E 0.10 tolerated_low_confidence(0.12) probably_damaging(0.94) TCGA-BR-7707-01 1 155691377 155691377 C T DAP3 Missense_Mutation p.P80S 0.33 tolerated(0.07) benign(0.011) TCGA-BR-7707-01 1 155717752 155717752 T - GON4L 3'Flank 0.14 TCGA-BR-7707-01 1 155912164 155912164 A G RXFP4 Missense_Mutation p.T222A 0.14 tolerated(0.36) benign(0.015) TCGA-BR-7707-01 1 156170176 156170176 C T SLC25A44 Missense_Mutation p.R180C 0.32 deleterious(0.02) probably_damaging(0.939) TCGA-BR-7707-01 1 156212601 156212601 G A BGLAP Missense_Mutation p.R51H 0.19 deleterious(0) probably_damaging(0.997) TCGA-BR-7707-01 1 156715104 156715104 A - HDGF Frame_Shift_Del p.F66Sfs*105 0.43 TCGA-BR-7707-01 1 156837916 156837916 T C NTRK1 Missense_Mutation p.L150P 0.08 deleterious(0) probably_damaging(1) TCGA-BR-7707-01 1 158064555 158064555 G A KIRREL Missense_Mutation p.R640H 0.32 deleterious(0.02) possibly_damaging(0.73) TCGA-BR-7707-01 1 158549198 158549198 A G OR10X1 Silent p.A164A 0.31 TCGA-BR-7707-01 1 158986435 158986435 G A IFI16 Missense_Mutation p.R165H 0.22 tolerated(0.72) benign(0.001) TCGA-BR-7707-01 1 160385688 160385688 C T VANGL2 Missense_Mutation p.R21C 0.37 deleterious(0) unknown(0) TCGA-BR-7707-01 1 161049561 161049561 G A PVRL4 Silent p.Y86Y 0.32 TCGA-BR-7707-01 1 161476213 161476213 C T FCGR2A Missense_Mutation p.R66C 0.21 deleterious(0) benign(0.443) TCGA-BR-7707-01 1 16260928 16260928 A G SPEN Silent p.A2731A 0.09 TCGA-BR-7707-01 1 167659290 167659290 C T RCSD1 Missense_Mutation p.S68L 0.05 tolerated(0.09) probably_damaging(0.962) TCGA-BR-7707-01 1 168266967 168266967 G A TBX19 Silent p.T203T 0.28 TCGA-BR-7707-01 1 1684273 1684273 G A NADK 3'UTR 0.34 TCGA-BR-7707-01 1 169394074 169394074 T C CCDC181 Missense_Mutation p.E31G 0.36 tolerated(0.15) probably_damaging(0.92) TCGA-BR-7707-01 1 170967338 170967338 A C MROH9 Missense_Mutation p.S507R 0.11 tolerated(0.24) benign(0) TCGA-BR-7707-01 1 171491345 171491347 TCC - PRRC2C In_Frame_Del p.P260del 0.15 TCGA-BR-7707-01 1 171956852 171956852 C T DNM3 Missense_Mutation p.R98C 0.27 deleterious(0.02) probably_damaging(1) TCGA-BR-7707-01 1 17318354 17318354 C A ATP13A2 Splice_Site p.X709_splice 0.13 TCGA-BR-7707-01 1 173836814 173836814 A G ZBTB37 5'Flank 0.11 TCGA-BR-7707-01 1 173878804 173878804 T C SERPINC1 Missense_Mutation p.M347V 0.10 tolerated(0.28) benign(0.001) TCGA-BR-7707-01 1 180155277 180155277 G A QSOX1 Missense_Mutation p.R326H 0.14 deleterious(0.01) probably_damaging(0.976) TCGA-BR-7707-01 1 182921962 182921962 C T SHCBP1L Missense_Mutation p.A103T 0.41 deleterious(0) benign(0.185) TCGA-BR-7707-01 1 183197579 183197579 T C LAMC2 Silent p.P513P 0.08 TCGA-BR-7707-01 1 186024782 186024782 A - HMCN1 Frame_Shift_Del p.K2375Nfs*4 0.11 TCGA-BR-7707-01 1 186291530 186291530 A - TPR Frame_Shift_Del p.F2127Lfs*65 0.15 TCGA-BR-7707-01 1 19595104 19595104 C T AKR7L Missense_Mutation p.A88T 0.04 probably_damaging(0.95) TCGA-BR-7707-01 1 196197341 196197341 C A KCNT2 3'UTR 0.19 TCGA-BR-7707-01 1 196288662 196288662 G A KCNT2 Missense_Mutation p.A767V 0.05 deleterious(0.04) benign(0.423) TCGA-BR-7707-01 1 197704823 197704823 C T DENND1B Intron 0.45 TCGA-BR-7707-01 1 200818250 200818250 A G CAMSAP2 Missense_Mutation p.T785A 0.05 tolerated(0.43) probably_damaging(0.944) TCGA-BR-7707-01 1 200968582 200968582 G A KIF21B Nonsense_Mutation p.R594* 0.06 TCGA-BR-7707-01 1 204378728 204378728 T C PPP1R15B Silent p.L604L 0.07 TCGA-BR-7707-01 1 207300065 207300065 C A C4BPA Silent p.T238T 0.27 TCGA-BR-7707-01 1 207758095 207758095 C T CR1 Missense_Mutation p.P1802S 0.12 tolerated(0.63) benign(0.02) TCGA-BR-7707-01 1 209804065 209804065 C T LAMB3 Missense_Mutation p.V280I 0.25 tolerated(0.66) benign(0.12) TCGA-BR-7707-01 1 212965234 212965234 C T TATDN3 5'UTR 0.41 TCGA-BR-7707-01 1 21563339 21563339 T G ECE1 Splice_Site p.X464_splice 0.09 TCGA-BR-7707-01 1 215956157 215956157 C T USH2A Missense_Mutation p.S3503N 0.10 benign(0.006) TCGA-BR-7707-01 1 220152906 220152906 C T EPRS Missense_Mutation p.V1255I 0.07 tolerated(0.43) benign(0.002) TCGA-BR-7707-01 1 221875832 221875832 C T DUSP10 Silent p.E457E 0.05 TCGA-BR-7707-01 1 221912540 221912540 A G DUSP10 Missense_Mutation p.Y183H 0.28 deleterious(0) probably_damaging(0.998) TCGA-BR-7707-01 1 222696078 222696078 T C HHIPL2 Silent p.R680R 0.08 TCGA-BR-7707-01 1 222801804 222801804 T A MIA3 Missense_Mutation p.D414E 0.11 tolerated(1) benign(0.002) TCGA-BR-7707-01 1 223177005 223177005 C T DISP1 Missense_Mutation p.R756W 0.24 deleterious(0) probably_damaging(0.993) TCGA-BR-7707-01 1 223934727 223934727 G - CAPN2 Frame_Shift_Del p.G198Vfs*20 0.11 TCGA-BR-7707-01 1 226074350 226074350 A G LEFTY1 3'UTR 0.10 TCGA-BR-7707-01 1 226413384 226413384 T C MIXL1 Silent p.V190V 0.07 TCGA-BR-7707-01 1 226924682 226924682 C T ITPKB Missense_Mutation p.A160T 0.12 deleterious_low_confidence(0.03) benign(0.405) TCGA-BR-7707-01 1 227954678 227954678 G A SNAP47 Missense_Mutation p.R381H 0.20 tolerated(0.15) benign(0.004) TCGA-BR-7707-01 1 228437865 228437865 G T OBSCN Missense_Mutation p.Q1503H 0.09 probably_damaging(0.998) TCGA-BR-7707-01 1 228495858 228495858 G A OBSCN Silent p.T5128T 0.20 TCGA-BR-7707-01 1 22902838 22902838 C T EPHA8 Silent p.R96R 0.31 TCGA-BR-7707-01 1 230372414 230372414 G - GALNT2 Frame_Shift_Del p.A185Lfs*36 0.20 TCGA-BR-7707-01 1 232581355 232581355 C T SIPA1L2 Silent p.P1091P 0.22 TCGA-BR-7707-01 1 2334580 2334580 G A RER1 3'UTR 0.10 TCGA-BR-7707-01 1 234553890 234553890 A G TARBP1 Silent p.I1215I 0.08 TCGA-BR-7707-01 1 23645142 23645142 T C HNRNPR Missense_Mutation p.D287G 0.17 deleterious(0) probably_damaging(0.993) TCGA-BR-7707-01 1 236557807 236557807 T C EDARADD Splice_Site p.X21_splice 0.08 TCGA-BR-7707-01 1 236590728 236590728 G A EDARADD Missense_Mutation p.R66Q 0.29 tolerated(0.28) benign(0) TCGA-BR-7707-01 1 236645911 236645911 C T EDARADD Missense_Mutation p.P204S 0.08 deleterious(0) probably_damaging(0.998) TCGA-BR-7707-01 1 236849884 236849884 G A ACTN2 5'UTR 0.23 TCGA-BR-7707-01 1 237024537 237024537 T C MTR Missense_Mutation p.V719A 0.12 deleterious(0) probably_damaging(1) TCGA-BR-7707-01 1 237778123 237778123 C T RYR2 Missense_Mutation p.P1899S 0.28 probably_damaging(0.997) TCGA-BR-7707-01 1 240072331 240072331 A C CHRM3 Missense_Mutation p.N527T 0.10 tolerated(0.11) benign(0.069) TCGA-BR-7707-01 1 240370282 240370282 G A FMN2 Missense_Mutation p.E724K 0.22 unknown(0) TCGA-BR-7707-01 1 242035457 242035457 T C EXO1 Missense_Mutation p.V464A 0.06 tolerated(0.75) benign(0) TCGA-BR-7707-01 1 242253062 242253062 A - PLD5 3'UTR 0.40 TCGA-BR-7707-01 1 2430597 2430597 G A PLCH2 Missense_Mutation p.V810I 0.08 deleterious(0) probably_damaging(0.998) TCGA-BR-7707-01 1 244217371 244217371 A G ZBTB18 Missense_Mutation p.K99E 0.12 tolerated(0.12) benign(0.164) TCGA-BR-7707-01 1 244218475 244218475 G A ZBTB18 Missense_Mutation p.V467M 0.15 deleterious(0) probably_damaging(0.983) TCGA-BR-7707-01 1 247319909 247319909 T - ZNF124 Frame_Shift_Del p.T277Lfs*31 0.11 TCGA-BR-7707-01 1 247320205 247320205 C T ZNF124 Missense_Mutation p.G178D 0.10 tolerated(0.06) probably_damaging(0.966) TCGA-BR-7707-01 1 247587740 247587740 T C NLRP3 Missense_Mutation p.L332P 0.24 deleterious(0) probably_damaging(1) TCGA-BR-7707-01 1 247694806 247694806 G A OR2C3 3'UTR 0.29 TCGA-BR-7707-01 1 248004563 248004563 A - OR11L1 Frame_Shift_Del p.L213* 0.16 TCGA-BR-7707-01 1 248005009 248005009 G A OR11L1 Nonsense_Mutation p.Q64* 0.07 TCGA-BR-7707-01 1 248223987 248223987 G A OR2L3 Missense_Mutation p.E2K 0.10 tolerated(0.12) possibly_damaging(0.616) TCGA-BR-7707-01 1 248308959 248308959 G A OR2M5 Silent p.G170G 0.07 TCGA-BR-7707-01 1 25568984 25568985 - C C1orf63 3'UTR 0.36 TCGA-BR-7707-01 1 26515997 26515997 C - CNKSR1 Frame_Shift_Del p.L702* 0.24 TCGA-BR-7707-01 1 26759476 26759476 C T DHDDS Missense_Mutation p.R14W 0.29 tolerated(0.08) benign(0.001) TCGA-BR-7707-01 1 26883500 26883500 T C RPS6KA1 Silent p.R340R 0.06 TCGA-BR-7707-01 1 29379717 29379717 A - EPB41 Frame_Shift_Del p.T582Qfs*11 0.27 TCGA-BR-7707-01 1 3102980 3102980 T C PRDM16 Missense_Mutation p.L110P 0.35 deleterious(0) possibly_damaging(0.498) TCGA-BR-7707-01 1 32280324 32280324 C A SPOCD1 Missense_Mutation p.R204M 0.06 deleterious(0.03) benign(0.319) TCGA-BR-7707-01 1 32745341 32745341 C T LCK Missense_Mutation p.A345V 0.30 deleterious(0) possibly_damaging(0.896) TCGA-BR-7707-01 1 32800476 32800476 A G MARCKSL1 Missense_Mutation p.S104P 0.16 tolerated(0.08) possibly_damaging(0.887) TCGA-BR-7707-01 1 32829722 32829722 G - TSSK3 Frame_Shift_Del p.V226Cfs*7 0.13 TCGA-BR-7707-01 1 33613190 33613190 G A TRIM62 Missense_Mutation p.S339L 0.21 tolerated(0.75) probably_damaging(0.994) TCGA-BR-7707-01 1 33625397 33625397 T C TRIM62 Missense_Mutation p.Y218C 0.05 tolerated(0.1) possibly_damaging(0.847) TCGA-BR-7707-01 1 34011774 34011774 C T CSMD2 Missense_Mutation p.G2844D 0.36 deleterious(0.03) possibly_damaging(0.862) TCGA-BR-7707-01 1 35873680 35873680 T C ZMYM4 Missense_Mutation p.F1290L 0.07 deleterious(0) probably_damaging(0.97) TCGA-BR-7707-01 1 36563081 36563081 T - COL8A2 3'UTR 0.39 TCGA-BR-7707-01 1 37285344 37285345 - A GRIK3 Frame_Shift_Ins p.M622Ifs*6 0.24 TCGA-BR-7707-01 1 37947230 37947231 - A ZC3H12A Frame_Shift_Ins p.K206Efs*20 0.26 TCGA-BR-7707-01 1 37948555 37948555 G - ZC3H12A Frame_Shift_Del p.A383Pfs*12 0.30 TCGA-BR-7707-01 1 3800085 3800085 G A DFFB Missense_Mutation p.R266H 0.09 deleterious(0) probably_damaging(0.996) TCGA-BR-7707-01 1 38305654 38305654 C T MTF1 Silent p.T195T 0.26 TCGA-BR-7707-01 1 40236161 40236161 G - OXCT2 Frame_Shift_Del p.P256Qfs*11 0.09 TCGA-BR-7707-01 1 40430970 40430970 C T MFSD2A Silent p.Y160Y 0.14 TCGA-BR-7707-01 1 40529914 40529914 T A CAP1 Missense_Mutation p.L104M 0.07 deleterious(0.02) probably_damaging(0.973) TCGA-BR-7707-01 1 40546070 40546070 C T PPT1 Missense_Mutation p.R209Q 0.28 tolerated(0.12) benign(0.025) TCGA-BR-7707-01 1 40945120 40945120 G A ZFP69 Silent p.A29A 0.22 TCGA-BR-7707-01 1 42645440 42645440 G A FOXJ3 Missense_Mutation p.R604W 0.08 deleterious(0.01) possibly_damaging(0.727) TCGA-BR-7707-01 1 43636531 43636531 C T EBNA1BP2 Missense_Mutation p.A170T 0.24 tolerated(0.09) benign(0.147) TCGA-BR-7707-01 1 45484249 45484249 A G ZSWIM5 Silent p.A1145A 0.17 TCGA-BR-7707-01 1 45797709 45797709 T C MUTYH Missense_Mutation p.D325G 0.07 deleterious(0) possibly_damaging(0.78) TCGA-BR-7707-01 1 46033700 46033700 T C AKR1A1 Missense_Mutation p.Y135H 0.11 tolerated(0.38) benign(0.076) TCGA-BR-7707-01 1 46977911 46977911 G T DMBX1 Silent p.A293A 0.11 TCGA-BR-7707-01 1 47512210 47512210 C T CYP4X1 Missense_Mutation p.P382L 0.18 deleterious(0.02) benign(0.098) TCGA-BR-7707-01 1 47691474 47691475 - G TAL1 Frame_Shift_Ins p.H30Afs*146 0.28 TCGA-BR-7707-01 1 52805802 52805802 G A ZFYVE9 Missense_Mutation p.V1280I 0.27 tolerated(0.94) benign(0.008) TCGA-BR-7707-01 1 53237431 53237431 C T ZYG11B Silent p.G312G 0.24 TCGA-BR-7707-01 1 55064971 55064971 G A ACOT11 Missense_Mutation p.R256Q 0.04 deleterious(0.01) possibly_damaging(0.73) TCGA-BR-7707-01 1 55073633 55073633 G A ACOT11 Silent p.A507A 0.19 TCGA-BR-7707-01 1 55307369 55307369 C - C1orf177 Intron 0.09 TCGA-BR-7707-01 1 57395224 57395224 G - C8B Frame_Shift_Del p.I544Lfs*51 0.19 TCGA-BR-7707-01 1 59812011 59812011 T C FGGY Missense_Mutation p.Y136H 0.15 deleterious(0.02) possibly_damaging(0.771) TCGA-BR-7707-01 1 6188970 6188970 A G CHD5 Missense_Mutation p.S1183P 0.25 deleterious(0.01) benign(0.093) TCGA-BR-7707-01 1 62740528 62740528 G - KANK4 Frame_Shift_Del p.P83Lfs*43 0.21 TCGA-BR-7707-01 1 63064448 63064448 C A ANGPTL3 Missense_Mutation p.H193N 0.26 tolerated(0.27) benign(0.009) TCGA-BR-7707-01 1 63920100 63920100 G T ITGB3BP Silent p.S165S 0.13 TCGA-BR-7707-01 1 64624767 64624767 C T ROR1 Silent p.C426C 0.11 TCGA-BR-7707-01 1 6520165 6520165 C T ESPN Nonsense_Mutation p.R842* 0.11 TCGA-BR-7707-01 1 65310493 65310493 C T JAK1 Missense_Mutation p.G732D 0.10 tolerated(0.18) possibly_damaging(0.866) TCGA-BR-7707-01 1 65310571 65310571 T G JAK1 Missense_Mutation p.E706A 0.07 deleterious(0) probably_damaging(0.999) TCGA-BR-7707-01 1 6589186 6589186 C T NOL9 Missense_Mutation p.A565T 0.30 deleterious(0.02) possibly_damaging(0.775) TCGA-BR-7707-01 1 70488956 70488956 G A LRRC7 Missense_Mutation p.A527T 0.10 tolerated(0.25) benign(0.039) TCGA-BR-7707-01 1 74716398 74716398 G A FPGT-TNNI3K Missense_Mutation p.R207H 0.37 deleterious(0.02) probably_damaging(0.997) TCGA-BR-7707-01 1 7792523 7792523 T C CAMTA1 Missense_Mutation p.M977T 0.14 deleterious(0.01) probably_damaging(0.943) TCGA-BR-7707-01 1 78392295 78392295 T C NEXN Missense_Mutation p.M229T 0.06 tolerated(0.67) benign(0.004) TCGA-BR-7707-01 1 79107475 79107475 C T IFI44L Missense_Mutation p.A447V 0.25 tolerated(0.44) benign(0) TCGA-BR-7707-01 1 79356867 79356867 A T ELTD1 Missense_Mutation p.V682D 0.22 deleterious(0.02) probably_damaging(0.993) TCGA-BR-7707-01 1 79357234 79357234 A - ELTD1 Frame_Shift_Del p.L662Yfs*28 0.10 TCGA-BR-7707-01 1 7995165 7995165 G A TNFRSF9 Missense_Mutation p.T151M 0.41 deleterious(0) probably_damaging(0.983) TCGA-BR-7707-01 1 8420670 8420670 G - RERE Frame_Shift_Del p.P966Lfs*4 0.27 TCGA-BR-7707-01 1 85560140 85560140 C T WDR63 Nonsense_Mutation p.R359* 0.07 TCGA-BR-7707-01 1 86047684 86047684 T C CYR61 Silent p.C117C 0.07 TCGA-BR-7707-01 1 89525072 89525072 G A GBP1 Missense_Mutation p.A119V 0.04 deleterious(0.01) probably_damaging(0.999) TCGA-BR-7707-01 1 89726358 89726358 A - GBP5 3'UTR 0.23 TCGA-BR-7707-01 1 93649684 93649684 A - CCDC18 Frame_Shift_Del p.K151Sfs*24 0.09 TCGA-BR-7707-01 1 95323005 95323005 C T SLC44A3 Missense_Mutation p.A396V 0.30 deleterious(0.01) benign(0.441) TCGA-BR-7707-01 20 1286385 1286386 - C SNPH Frame_Shift_Ins p.N393Qfs*22 0.44 TCGA-BR-7707-01 20 16360726 16360726 G A KIF16B Missense_Mutation p.R641C 0.32 deleterious(0) probably_damaging(1) TCGA-BR-7707-01 20 18295989 18295989 C T ZNF133 Missense_Mutation p.A164V 0.09 tolerated(0.17) benign(0.004) TCGA-BR-7707-01 20 1896067 1896067 T C SIRPA Silent p.F134F 0.04 TCGA-BR-7707-01 20 21376534 21376534 G A NKX2-4 3'UTR 0.10 TCGA-BR-7707-01 20 2321186 2321186 C A TGM3 Missense_Mutation p.P681T 0.05 tolerated(0.06) benign(0.035) TCGA-BR-7707-01 20 2378638 2378638 C T TGM6 Silent p.T206T 0.16 TCGA-BR-7707-01 20 31387092 31387092 C T DNMT3B Missense_Mutation p.R573W 0.19 deleterious(0) probably_damaging(0.996) TCGA-BR-7707-01 20 32341075 32341075 C A ZNF341 Missense_Mutation p.P196H 0.24 deleterious(0.04) possibly_damaging(0.847) TCGA-BR-7707-01 20 34055233 34055233 C A CEP250 Missense_Mutation p.S235Y 0.10 benign(0.059) TCGA-BR-7707-01 20 34312604 34312604 C A RBM39 Missense_Mutation p.R192L 0.06 deleterious(0) probably_damaging(0.995) TCGA-BR-7707-01 20 35219613 35219616 ACTC - TGIF2 Frame_Shift_Del p.T165Cfs*2 0.24 TCGA-BR-7707-01 20 35749348 35749348 G T MROH8 Missense_Mutation p.L717M 0.11 tolerated(0.36) probably_damaging(1) TCGA-BR-7707-01 20 3653476 3653476 G A ADAM33 Silent p.G401G 0.47 TCGA-BR-7707-01 20 3669223 3669223 G A SIGLEC1 Missense_Mutation p.A1705V 0.24 tolerated_low_confidence(0.22) benign(0.006) TCGA-BR-7707-01 20 3729009 3729009 G A HSPA12B Missense_Mutation p.R274H 0.32 tolerated(0.12) benign(0.058) TCGA-BR-7707-01 20 377393 377393 G T TRIB3 3'UTR 0.18 TCGA-BR-7707-01 20 3782662 3782662 G A CDC25B Missense_Mutation p.R338Q 0.33 deleterious(0.02) probably_damaging(0.983) TCGA-BR-7707-01 20 39791298 39791298 G A PLCG1 Missense_Mutation p.S205N 0.06 tolerated(0.38) benign(0.005) TCGA-BR-7707-01 20 39990829 39990829 C - EMILIN3 Frame_Shift_Del p.W461Gfs*21 0.24 TCGA-BR-7707-01 20 40081533 40081533 T C CHD6 Missense_Mutation p.Y1057C 0.06 deleterious(0) probably_damaging(0.992) TCGA-BR-7707-01 20 43141456 43141456 C T SERINC3 Silent p.A127A 0.17 TCGA-BR-7707-01 20 43243338 43243338 C T PKIG Silent p.L47L 0.31 TCGA-BR-7707-01 20 43249692 43249692 G A ADA Silent p.D314D 0.08 TCGA-BR-7707-01 20 43353454 43353454 G A WISP2 Missense_Mutation p.S118N 0.11 deleterious(0) benign(0.139) TCGA-BR-7707-01 20 43926908 43926908 C T MATN4 Missense_Mutation p.R443Q 0.07 probably_damaging(0.962) TCGA-BR-7707-01 20 44430066 44430066 G - DNTTIP1 Frame_Shift_Del p.C156Lfs*52 0.09 TCGA-BR-7707-01 20 48431697 48431697 T C SLC9A8 Missense_Mutation p.M60T 0.10 deleterious(0) benign(0.34) TCGA-BR-7707-01 20 5090082 5090082 G A TMEM230 Missense_Mutation p.R62C 0.10 deleterious(0) probably_damaging(0.942) TCGA-BR-7707-01 20 52789528 52789528 G A CYP24A1 Silent p.S123S 0.09 TCGA-BR-7707-01 20 56918855 56918855 A G RAB22A Silent p.R66R 0.17 TCGA-BR-7707-01 20 57484420 57484420 C T GNAS Missense_Mutation p.R844C 0.12 deleterious(0.01) probably_damaging(1) TCGA-BR-7707-01 20 60902996 60902996 G A LAMA5 Missense_Mutation p.R1575C 0.26 benign(0.379) TCGA-BR-7707-01 20 61809912 61809912 G A MIR124-3 RNA 0.11 TCGA-BR-7707-01 20 61908657 61908657 G A ARFGAP1 Missense_Mutation p.R148Q 0.33 tolerated(0.17) possibly_damaging(0.856) TCGA-BR-7707-01 20 61938964 61938964 G A COL20A1 Missense_Mutation p.A207T 0.08 tolerated(0.74) benign(0.002) TCGA-BR-7707-01 20 61944569 61944569 G A COL20A1 Missense_Mutation p.R726H 0.21 tolerated(0.09) benign(0.159) TCGA-BR-7707-01 20 62046276 62046276 G A KCNQ2 Missense_Mutation p.A502V 0.33 tolerated(0.07) benign(0.094) TCGA-BR-7707-01 20 62198376 62198376 G T HELZ2 Missense_Mutation p.P779T 0.28 deleterious(0) probably_damaging(1) TCGA-BR-7707-01 20 62421541 62421541 G A ZBTB46 Silent p.H190H 0.44 TCGA-BR-7707-01 20 62737451 62737451 C T NPBWR2 Missense_Mutation p.R245H 0.33 tolerated(0.83) benign(0.001) TCGA-BR-7707-01 20 6759451 6759451 C T BMP2 Silent p.Y302Y 0.40 TCGA-BR-7707-01 20 7886818 7886818 G A HAO1 Missense_Mutation p.A235V 0.30 tolerated(0.98) benign(0.007) TCGA-BR-7707-01 21 19653413 19653413 C T TMPRSS15 Missense_Mutation p.R871Q 0.08 tolerated(0.21) benign(0.001) TCGA-BR-7707-01 21 28210023 28210023 C T ADAMTS1 Missense_Mutation p.G927S 0.07 deleterious(0) probably_damaging(1) TCGA-BR-7707-01 21 30359239 30359239 C T LTN1 Missense_Mutation p.R66Q 0.29 deleterious(0.02) probably_damaging(0.999) TCGA-BR-7707-01 21 31914005 31914005 C T KRTAP19-6 Missense_Mutation p.E50K 0.04 tolerated_low_confidence(0.86) unknown(0) TCGA-BR-7707-01 21 32639198 32639198 G A TIAM1 Missense_Mutation p.R31C 0.11 deleterious_low_confidence(0) probably_damaging(1) TCGA-BR-7707-01 21 33982197 33982197 G A AP000275.65 Silent p.S86S 0.33 TCGA-BR-7707-01 21 39755297 39755297 G A ERG 3'UTR 0.23 TCGA-BR-7707-01 21 40550511 40550511 G A PSMG1 Silent p.T173T 0.07 TCGA-BR-7707-01 21 41414322 41414322 C T DSCAM Missense_Mutation p.A1888T 0.18 deleterious(0) probably_damaging(0.999) TCGA-BR-7707-01 21 41496241 41496241 C T DSCAM Missense_Mutation p.A1193T 0.19 deleterious(0) benign(0.305) TCGA-BR-7707-01 21 43256665 43256665 G A PRDM15 Silent p.L731L 0.09 TCGA-BR-7707-01 21 43327823 43327823 C T C2CD2 Silent p.T363T 0.26 TCGA-BR-7707-01 21 45478985 45478985 A G TRAPPC10 Missense_Mutation p.E227G 0.12 deleterious(0) probably_damaging(0.998) TCGA-BR-7707-01 21 45655435 45655435 G A ICOSLG Silent p.S139S 0.31 TCGA-BR-7707-01 21 45679416 45679416 G A DNMT3L Missense_Mutation p.A83V 0.08 tolerated(0.46) benign(0.074) TCGA-BR-7707-01 21 45947381 45947381 C T TSPEAR Missense_Mutation p.V315M 0.24 deleterious(0) probably_damaging(0.982) TCGA-BR-7707-01 21 46895395 46895395 C T COL18A1 Silent p.S428S 0.23 TCGA-BR-7707-01 21 47786513 47786513 G A PCNT Missense_Mutation p.R875H 0.30 possibly_damaging(0.84) TCGA-BR-7707-01 21 47801609 47801609 G T PCNT Missense_Mutation p.G1056C 0.23 possibly_damaging(0.624) TCGA-BR-7707-01 22 18021966 18021966 G T CECR2 Missense_Mutation p.G691W 0.54 deleterious(0) probably_damaging(0.931) TCGA-BR-7707-01 22 19055688 19055688 G A DGCR2 Missense_Mutation p.R85W 0.31 deleterious_low_confidence(0.02) probably_damaging(0.998) TCGA-BR-7707-01 22 19766891 19766891 C T GNB1L 3'Flank 0.11 TCGA-BR-7707-01 22 20094192 20094192 C A DGCR8 Missense_Mutation p.A656E 0.11 tolerated(0.11) possibly_damaging(0.53) TCGA-BR-7707-01 22 20130522 20130522 C - ZDHHC8 Frame_Shift_Del p.T459Rfs*177 0.18 TCGA-BR-7707-01 22 21348040 21348040 T C LZTR1 Silent p.G450G 0.21 TCGA-BR-7707-01 22 21385717 21385717 C T SLC7A4 Missense_Mutation p.G129S 0.08 tolerated(0.11) benign(0.202) TCGA-BR-7707-01 22 23741995 23741995 G A ZDHHC8P1 RNA 0.40 TCGA-BR-7707-01 22 25597378 25597378 C T CRYBB3 Silent p.H5H 0.04 TCGA-BR-7707-01 22 26118325 26118325 C T ADRBK2 Missense_Mutation p.R659C 0.06 deleterious_low_confidence(0.02) possibly_damaging(0.696) TCGA-BR-7707-01 22 30660414 30660414 G A OSM Missense_Mutation p.H73Y 0.15 tolerated(0.9) benign(0.063) TCGA-BR-7707-01 22 31533732 31533732 C A PLA2G3 Missense_Mutation p.G344C 0.31 deleterious(0.02) possibly_damaging(0.906) TCGA-BR-7707-01 22 32017778 32017778 C T PISD Missense_Mutation p.V105I 0.06 tolerated(0.86) benign(0.032) TCGA-BR-7707-01 22 35719087 35719087 G A TOM1 Missense_Mutation p.V95M 0.14 deleterious(0.03) probably_damaging(1) TCGA-BR-7707-01 22 36680552 36680552 C T MYH9 Missense_Mutation p.R1830H 0.09 benign(0.022) TCGA-BR-7707-01 22 36684927 36684927 G A MYH9 Missense_Mutation p.T1539M 0.06 benign(0.298) TCGA-BR-7707-01 22 36689446 36689446 G A MYH9 Missense_Mutation p.R1342W 0.31 possibly_damaging(0.67) TCGA-BR-7707-01 22 37330015 37330015 C T CSF2RB Missense_Mutation p.R432C 0.25 tolerated(0.19) benign(0.001) TCGA-BR-7707-01 22 38040646 38040646 C T SH3BP1 Silent p.D207D 0.07 TCGA-BR-7707-01 22 38824122 38824122 G A KCNJ4 Missense_Mutation p.R6C 0.30 deleterious(0) possibly_damaging(0.517) TCGA-BR-7707-01 22 39112791 39112791 G A GTPBP1 Missense_Mutation p.R207H 0.09 deleterious(0.02) possibly_damaging(0.545) TCGA-BR-7707-01 22 41077107 41077107 C T MCHR1 Silent p.D148D 0.16 TCGA-BR-7707-01 22 41660826 41660826 T C RANGAP1 Missense_Mutation p.I108V 0.12 tolerated(0.43) benign(0.005) TCGA-BR-7707-01 22 42190432 42190432 C A MEI1 Missense_Mutation p.A1162D 0.10 deleterious(0) possibly_damaging(0.463) TCGA-BR-7707-01 22 42463259 42463259 C T NAGA Silent p.A120A 0.07 TCGA-BR-7707-01 22 42908278 42908278 C T RRP7A 3'UTR 0.14 TCGA-BR-7707-01 22 43023650 43023652 TGA - CYB5R3 In_Frame_Del p.I202del 0.07 TCGA-BR-7707-01 22 44223513 44223513 G A SULT4A1 Intron 0.12 TCGA-BR-7707-01 22 44681394 44681394 C T KIAA1644 Silent p.P171P 0.29 TCGA-BR-7707-01 22 45564091 45564091 A C NUP50 Silent p.T11T 0.09 TCGA-BR-7707-01 22 45726600 45726600 C T FAM118A Silent p.D213D 0.18 TCGA-BR-7707-01 22 46657108 46657109 - A PKDREJ Frame_Shift_Ins p.L704Ffs*16 0.12 TCGA-BR-7707-01 22 46776791 46776791 C - CELSR1 Frame_Shift_Del p.A2384Lfs*85 0.19 TCGA-BR-7707-01 22 46859655 46859655 A T CELSR1 Missense_Mutation p.C1378S 0.37 deleterious(0) probably_damaging(0.998) TCGA-BR-7707-01 22 50217616 50217616 A C BRD1 Missense_Mutation p.L117R 0.33 deleterious(0) probably_damaging(1) TCGA-BR-7707-01 22 50966139 50966139 A G TYMP Missense_Mutation p.V175A 0.09 tolerated(0.7) benign(0.003) TCGA-BR-7707-01 22 50988017 50988017 C T KLHDC7B Silent p.D474D 0.08 TCGA-BR-7707-01 2 106498353 106498353 G A NCK2 Missense_Mutation p.A266T 0.15 tolerated(0.63) benign(0.001) TCGA-BR-7707-01 2 113332680 113332680 A G POLR1B Missense_Mutation p.M928V 0.09 deleterious(0) probably_damaging(0.997) TCGA-BR-7707-01 2 11706636 11706636 T G GREB1 Missense_Mutation p.L103R 0.07 deleterious(0) probably_damaging(0.999) TCGA-BR-7707-01 2 11774326 11774326 C T GREB1 Silent p.D1687D 0.24 TCGA-BR-7707-01 2 122215303 122215303 T C CLASP1 Missense_Mutation p.I449V 0.07 deleterious(0.03) possibly_damaging(0.62) TCGA-BR-7707-01 2 128774049 128774050 - G SAP130 Frame_Shift_Ins p.K167Qfs*13 0.21 TCGA-BR-7707-01 2 131976274 131976274 A C POTEE Missense_Mutation p.K100T 0.08 deleterious_low_confidence(0) benign(0.403) TCGA-BR-7707-01 2 132021899 132021899 C - POTEE Frame_Shift_Del p.E959Rfs*25 0.09 TCGA-BR-7707-01 2 133403128 133403128 G A GPR39 Silent p.A437A 0.06 TCGA-BR-7707-01 2 136566490 136566490 C T LCT Missense_Mutation p.A1143T 0.23 deleterious(0.04) possibly_damaging(0.775) TCGA-BR-7707-01 2 143715236 143715236 T C KYNU Silent p.L178L 0.29 TCGA-BR-7707-01 2 145157300 145157300 T G ZEB2 Missense_Mutation p.K485T 0.10 tolerated(0.1) probably_damaging(0.947) TCGA-BR-7707-01 2 148683686 148683686 A - ACVR2A Frame_Shift_Del p.K437Rfs*5 0.42 TCGA-BR-7707-01 2 152324542 152324542 T C RIF1 Missense_Mutation p.I2210T 0.11 deleterious(0) probably_damaging(0.995) TCGA-BR-7707-01 2 157182339 157182339 G A NR4A2 Missense_Mutation p.R572C 0.22 deleterious(0) probably_damaging(1) TCGA-BR-7707-01 2 157185028 157185029 - T NR4A2 Frame_Shift_Ins p.N294Kfs*10 0.21 TCGA-BR-7707-01 2 164467599 164467599 G A FIGN Missense_Mutation p.P248L 0.08 tolerated(0.08) benign(0.008) TCGA-BR-7707-01 2 166535234 166535234 C T CSRNP3 Silent p.C243C 0.10 TCGA-BR-7707-01 2 166536370 166536370 C T CSRNP3 3'UTR 0.24 TCGA-BR-7707-01 2 167262882 167262882 G T SCN7A Silent p.T1419T 0.04 TCGA-BR-7707-01 2 168105930 168105930 A G XIRP2 Silent p.K2676K 0.08 TCGA-BR-7707-01 2 170063685 170063685 C T LRP2 Missense_Mutation p.R2182H 0.08 benign(0.049) TCGA-BR-7707-01 2 170103435 170103435 C T LRP2 Silent p.P990P 0.09 TCGA-BR-7707-01 2 171807902 171807902 A G GORASP2 Missense_Mutation p.N167S 0.09 deleterious(0.02) probably_damaging(0.925) TCGA-BR-7707-01 2 172844276 172844276 G T HAT1 Missense_Mutation p.K364N 0.09 deleterious(0.02) benign(0.039) TCGA-BR-7707-01 2 175263039 175263039 G A SCRN3 Missense_Mutation p.V10M 0.09 deleterious(0) probably_damaging(0.969) TCGA-BR-7707-01 2 176945561 176945561 C T EVX2 Nonsense_Mutation p.W235* 0.11 TCGA-BR-7707-01 2 17698737 17698737 T - RAD51AP2 Frame_Shift_Del p.T316Lfs*2 0.30 TCGA-BR-7707-01 2 176995417 176995417 C - HOXD8 Frame_Shift_Del p.P110Lfs*67 0.28 TCGA-BR-7707-01 2 177036780 177036780 C T HOXD3 Silent p.G359G 0.35 TCGA-BR-7707-01 2 177054563 177054563 G A HOXD1 Missense_Mutation p.S227N 0.06 tolerated(0.27) benign(0.001) TCGA-BR-7707-01 2 179430621 179430621 G A TTN Silent p.N26746N 0.08 TCGA-BR-7707-01 2 179438533 179438533 C T TTN Missense_Mutation p.G24109D 0.31 TCGA-BR-7707-01 2 179440424 179440424 G A TTN Missense_Mutation p.R23479W 0.25 TCGA-BR-7707-01 2 179444126 179444126 A G TTN Intron 0.32 TCGA-BR-7707-01 2 179452031 179452031 C T TTN Missense_Mutation p.V21303M 0.15 TCGA-BR-7707-01 2 179516199 179516199 T C TTN Silent p.P13176P 0.18 TCGA-BR-7707-01 2 17952518 17952518 A - GEN1 Frame_Shift_Del p.K257Nfs*56 0.09 TCGA-BR-7707-01 2 179596108 179596108 C A TTN Missense_Mutation p.K5795N 0.06 TCGA-BR-7707-01 2 179606044 179606044 G A TTN Silent p.F3972F 0.10 TCGA-BR-7707-01 2 179633504 179633504 T - TTN Frame_Shift_Del p.K3020Sfs*6 0.19 TCGA-BR-7707-01 2 179732925 179732925 C T CCDC141 Missense_Mutation p.R801H 0.36 tolerated(0.55) benign(0.002) TCGA-BR-7707-01 2 182542664 182542664 C T NEUROD1 Silent p.L308L 0.12 TCGA-BR-7707-01 2 183902820 183902820 C T NCKAP1 Missense_Mutation p.R3H 0.21 deleterious_low_confidence(0) benign(0.051) TCGA-BR-7707-01 2 184023121 184023121 A - NUP35 Frame_Shift_Del p.K241Nfs*22 0.22 TCGA-BR-7707-01 2 187605049 187605049 G A FAM171B Silent p.K111K 0.06 TCGA-BR-7707-01 2 187615864 187615864 T C FAM171B Missense_Mutation p.F243S 0.08 tolerated(0.23) benign(0.211) TCGA-BR-7707-01 2 191897688 191897688 G A STAT4 Silent p.C680C 0.11 TCGA-BR-7707-01 2 192701019 192701019 C T SDPR Missense_Mutation p.R303Q 0.30 tolerated(0.06) benign(0.1) TCGA-BR-7707-01 2 196642652 196642653 CT - DNAH7 Frame_Shift_Del p.R3645Sfs*4 0.24 TCGA-BR-7707-01 2 198415089 198415089 G A HSPE1-MOB4 Silent p.R211R 0.21 TCGA-BR-7707-01 2 201718647 201718647 T C CLK1 Silent p.S472S 0.11 TCGA-BR-7707-01 2 202074183 202074183 T G CASP10 Missense_Mutation p.L438R 0.16 deleterious(0) probably_damaging(0.997) TCGA-BR-7707-01 2 202496815 202496815 C T TMEM237 Missense_Mutation p.G171D 0.37 deleterious(0) probably_damaging(0.995) TCGA-BR-7707-01 2 20251253 20251253 C T LAPTM4A Missense_Mutation p.R10H 0.47 deleterious(0.01) possibly_damaging(0.702) TCGA-BR-7707-01 2 204037566 204037566 A G NBEAL1 Missense_Mutation p.M2076V 0.30 tolerated(1) benign(0.001) TCGA-BR-7707-01 2 204073415 204073415 C T NBEAL1 Missense_Mutation p.T2492I 0.11 deleterious(0.01) possibly_damaging(0.904) TCGA-BR-7707-01 2 205983664 205983664 C T PARD3B Nonsense_Mutation p.R234* 0.33 TCGA-BR-7707-01 2 207041587 207041587 T C GPR1 Missense_Mutation p.T129A 0.07 deleterious(0.02) probably_damaging(0.917) TCGA-BR-7707-01 2 207171520 207171520 G A ZDBF2 Silent p.P756P 0.09 TCGA-BR-7707-01 2 20871149 20871149 C T GDF7 Silent p.Y439Y 0.20 TCGA-BR-7707-01 2 208994365 208994365 C T CRYGC Missense_Mutation p.E18K 0.26 deleterious(0) possibly_damaging(0.476) TCGA-BR-7707-01 2 209138324 209138324 C T PIKFYVE Silent p.G63G 0.09 TCGA-BR-7707-01 2 209209854 209209854 G A PIKFYVE Missense_Mutation p.A1683T 0.08 tolerated(0.07) benign(0.097) TCGA-BR-7707-01 2 210887888 210887888 G A KANSL1L Nonsense_Mutation p.R917* 0.30 TCGA-BR-7707-01 2 211179636 211179636 T G MYL1 Missense_Mutation p.K44T 0.14 tolerated(0.39) benign(0.395) TCGA-BR-7707-01 2 211442163 211442163 C T CPS1 Silent p.L140L 0.26 TCGA-BR-7707-01 2 21228086 21228086 G A APOB Missense_Mutation p.A3885V 0.21 benign(0.4) TCGA-BR-7707-01 2 21232835 21232835 C A APOB Missense_Mutation p.G2302V 0.05 benign(0.073) TCGA-BR-7707-01 2 21233839 21233839 T G APOB Missense_Mutation p.K1967N 0.14 benign(0.15) TCGA-BR-7707-01 2 217285159 217285159 C T SMARCAL1 Nonsense_Mutation p.R334* 0.14 TCGA-BR-7707-01 2 218696258 218696258 G - TNS1 Frame_Shift_Del p.P973Rfs*13 0.19 TCGA-BR-7707-01 2 219000083 219000083 G A CXCR2 Missense_Mutation p.V187I 0.11 tolerated(1) benign(0.007) TCGA-BR-7707-01 2 219614016 219614016 C T TTLL4 Nonsense_Mutation p.R881* 0.20 TCGA-BR-7707-01 2 219617636 219617636 C T TTLL4 Nonsense_Mutation p.R1043* 0.21 TCGA-BR-7707-01 2 220080867 220080867 G A ABCB6 Missense_Mutation p.R336W 0.18 tolerated(0.13) benign(0.052) TCGA-BR-7707-01 2 220347922 220347922 C - SPEG Frame_Shift_Del p.S1915Vfs*324 0.26 TCGA-BR-7707-01 2 220355154 220355154 C T SPEG Missense_Mutation p.A2982V 0.31 benign(0.419) TCGA-BR-7707-01 2 220370455 220370455 C T GMPPA Missense_Mutation p.P291L 0.24 deleterious(0) probably_damaging(0.988) TCGA-BR-7707-01 2 220432656 220432656 C T OBSL1 Missense_Mutation p.V440I 0.33 deleterious(0.01) probably_damaging(0.931) TCGA-BR-7707-01 2 222290668 222290668 A - EPHA4 3'UTR 0.25 TCGA-BR-7707-01 2 223917920 223917920 C T KCNE4 Silent p.S124S 0.14 TCGA-BR-7707-01 2 225367719 225367719 G A CUL3 Missense_Mutation p.T483M 0.28 tolerated(0.19) benign(0.072) TCGA-BR-7707-01 2 227663053 227663053 G A IRS1 Silent p.G134G 0.10 TCGA-BR-7707-01 2 228175562 228175562 G A COL4A3 Missense_Mutation p.R1609Q 0.20 unknown(0) TCGA-BR-7707-01 2 231042313 231042313 C T SP110 Missense_Mutation p.A511T 0.31 tolerated(0.25) possibly_damaging(0.695) TCGA-BR-7707-01 2 233349513 233349513 G - ECEL1 Frame_Shift_Del p.H353Tfs*8 0.13 TCGA-BR-7707-01 2 235404544 235404544 T G ARL4C 3'UTR 0.13 TCGA-BR-7707-01 2 239140958 239140958 C T AC016757.3 5'Flank 0.23 TCGA-BR-7707-01 2 240056289 240056289 A G HDAC4 Silent p.L343L 0.21 TCGA-BR-7707-01 2 241463640 241463640 G A ANKMY1 Silent p.H409H 0.30 TCGA-BR-7707-01 2 241533462 241533462 G - CAPN10 Frame_Shift_Del 0.27 TCGA-BR-7707-01 2 242142788 242142788 G A ANO7 Missense_Mutation p.R309H 0.23 tolerated(0.13) benign(0.001) TCGA-BR-7707-01 2 24244805 24244805 G A MFSD2B Missense_Mutation p.V287M 0.08 deleterious(0) probably_damaging(0.93) TCGA-BR-7707-01 2 242572343 242572343 G A THAP4 Missense_Mutation p.S410L 0.27 tolerated(0.12) benign(0.012) TCGA-BR-7707-01 2 26414471 26414471 C T HADHA Missense_Mutation p.R676H 0.14 deleterious(0) probably_damaging(0.999) TCGA-BR-7707-01 2 26684998 26684998 G A OTOF Silent p.D1748D 0.25 TCGA-BR-7707-01 2 26802284 26802284 G A C2orf70 Missense_Mutation p.C195Y 0.31 tolerated(0.81) benign(0.003) TCGA-BR-7707-01 2 27276774 27276774 C T AGBL5 Missense_Mutation p.T133M 0.07 tolerated(0.07) benign(0.394) TCGA-BR-7707-01 2 27282134 27282136 AGC - AGBL5 In_Frame_Del p.S654del 0.19 TCGA-BR-7707-01 2 27307392 27307392 G A EMILIN1 Silent p.G850G 0.10 TCGA-BR-7707-01 2 27566379 27566379 C T GTF3C2 Missense_Mutation p.G15S 0.08 tolerated_low_confidence(0.37) benign(0.007) TCGA-BR-7707-01 2 27850186 27850186 C T CCDC121 Missense_Mutation p.D323N 0.09 tolerated(0.05) benign(0.007) TCGA-BR-7707-01 2 28627100 28627100 C A FOSL2 Missense_Mutation p.P77T 0.07 tolerated(0.84) benign(0) TCGA-BR-7707-01 2 29296745 29296745 T C C2orf71 Missense_Mutation p.D128G 0.09 tolerated(0.31) benign(0.013) TCGA-BR-7707-01 2 29379233 29379233 A - CLIP4 Frame_Shift_Del p.D396Ifs*19 0.25 TCGA-BR-7707-01 2 36771577 36771577 G T CRIM1 Missense_Mutation p.E894D 0.11 tolerated(0.62) benign(0.001) TCGA-BR-7707-01 2 36818143 36818143 G A FEZ2 Missense_Mutation p.A93V 0.27 deleterious(0.02) probably_damaging(0.956) TCGA-BR-7707-01 2 37483955 37483955 G A PRKD3 Missense_Mutation p.R755C 0.31 deleterious(0) probably_damaging(0.996) TCGA-BR-7707-01 2 39070156 39070156 G A DHX57 Missense_Mutation p.R806C 0.25 deleterious(0) probably_damaging(1) TCGA-BR-7707-01 2 44428909 44428909 C T PPM1B Missense_Mutation p.R191C 0.25 deleterious(0) probably_damaging(0.999) TCGA-BR-7707-01 2 44445156 44445156 A G PPM1B Missense_Mutation p.M339V 0.05 tolerated(0.21) benign(0.008) TCGA-BR-7707-01 2 44528255 44528255 C T SLC3A1 Silent p.P375P 0.26 TCGA-BR-7707-01 2 48692092 48692092 C T PPP1R21 Silent p.N237N 0.09 TCGA-BR-7707-01 2 50170901 50170901 G A NRXN1 Missense_Mutation p.A1426V 0.11 deleterious(0.02) benign(0.187) TCGA-BR-7707-01 2 50464107 50464107 A G NRXN1 Silent p.P1162P 0.22 TCGA-BR-7707-01 2 60688092 60688092 G A BCL11A Missense_Mutation p.T652M 0.24 deleterious(0.03) benign(0.43) TCGA-BR-7707-01 2 64109785 64109788 AGTG - UGP2 Splice_Site p.X147_splice 0.26 TCGA-BR-7707-01 2 675583 675583 G A TMEM18 Silent p.H35H 0.33 TCGA-BR-7707-01 2 69174390 69174390 C T GKN2 Splice_Site p.X69_splice 0.29 TCGA-BR-7707-01 2 71163176 71163176 G A ATP6V1B1 Missense_Mutation p.R31Q 0.30 tolerated_low_confidence(0.15) benign(0.01) TCGA-BR-7707-01 2 71577059 71577059 A T ZNF638 Missense_Mutation p.Q325H 0.10 deleterious(0) possibly_damaging(0.553) TCGA-BR-7707-01 2 7164594 7164594 A G RNF144A Missense_Mutation p.M202V 0.31 deleterious(0) probably_damaging(0.955) TCGA-BR-7707-01 2 71762412 71762412 C T DYSF Silent p.C488C 0.28 TCGA-BR-7707-01 2 73198729 73198729 G A SFXN5 Silent p.L237L 0.30 TCGA-BR-7707-01 2 73490910 73490910 C - FBXO41 Frame_Shift_Del p.N658Tfs*3 0.13 TCGA-BR-7707-01 2 73747133 73747133 C T ALMS1 Silent p.R3256R 0.07 TCGA-BR-7707-01 2 73957738 73957738 C A TPRKB Missense_Mutation p.Q130H 0.07 tolerated(0.06) possibly_damaging(0.64) TCGA-BR-7707-01 2 74089388 74089388 C T STAMBP 3'UTR 0.30 TCGA-BR-7707-01 2 74275076 74275076 C - TET3 Frame_Shift_Del p.P544Lfs*5 0.25 TCGA-BR-7707-01 2 74317124 74317124 C T TET3 Missense_Mutation p.R862W 0.10 deleterious(0) probably_damaging(0.999) TCGA-BR-7707-01 2 74906809 74906809 T C SEMA4F Missense_Mutation p.C596R 0.34 tolerated(0.3) probably_damaging(0.999) TCGA-BR-7707-01 2 77746704 77746704 A G LRRTM4 Silent p.I97I 0.15 TCGA-BR-7707-01 2 86831536 86831536 A G RNF103 Silent p.P496P 0.10 TCGA-BR-7707-01 2 87017603 87017603 A G CD8A Missense_Mutation p.L84P 0.09 tolerated(0.1) probably_damaging(0.998) TCGA-BR-7707-01 2 89034099 89034099 G A RPIA Missense_Mutation p.V165I 0.10 tolerated(0.08) possibly_damaging(0.759) TCGA-BR-7707-01 2 89399582 89399582 C T IGKV1-16 Missense_Mutation p.V41I 0.07 deleterious(0.04) possibly_damaging(0.529) TCGA-BR-7707-01 2 8957838 8957838 C T KIDINS220 Nonsense_Mutation p.W72* 0.06 TCGA-BR-7707-01 2 90153758 90153758 C T IGKV3D-15 Missense_Mutation p.A5V 0.17 tolerated(0.07) benign(0.012) TCGA-BR-7707-01 2 95522779 95522779 C T ANKRD20A8P RNA 0.31 TCGA-BR-7707-01 2 95847304 95847304 C A ZNF2 Missense_Mutation p.S244Y 0.07 deleterious(0.04) probably_damaging(0.973) TCGA-BR-7707-01 2 96991501 96991501 G A ITPRIPL1 5'Flank 0.17 TCGA-BR-7707-01 2 99172076 99172076 C T INPP4A Silent p.L548L 0.27 TCGA-BR-7707-01 2 99204042 99204042 G A INPP4A Missense_Mutation p.E969K 0.31 deleterious(0) possibly_damaging(0.78) TCGA-BR-7707-01 3 10050174 10050174 G - AC022007.5 RNA 0.12 TCGA-BR-7707-01 3 101370285 101370285 G A ZBTB11 Missense_Mutation p.H963Y 0.11 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BR-7707-01 3 10444026 10444026 G A ATP2B2 Missense_Mutation p.A135V 0.30 tolerated(0.08) benign(0.225) TCGA-BR-7707-01 3 108773717 108773717 G A MORC1 Silent p.G396G 0.28 TCGA-BR-7707-01 3 112724472 112724472 T C C3orf17 Missense_Mutation p.T539A 0.06 tolerated(0.06) benign(0.053) TCGA-BR-7707-01 3 113440776 113440776 T G NAA50 Missense_Mutation p.Q114P 0.25 deleterious(0) probably_damaging(0.996) TCGA-BR-7707-01 3 114069855 114069855 G A ZBTB20 Missense_Mutation p.T357M 0.40 tolerated(0.14) possibly_damaging(0.63) TCGA-BR-7707-01 3 119135204 119135204 A C ARHGAP31 3'UTR 0.27 TCGA-BR-7707-01 3 119528957 119528957 G A NR1I2 Missense_Mutation p.A122T 0.36 tolerated(0.68) benign(0.013) TCGA-BR-7707-01 3 121207489 121207489 A - POLQ Frame_Shift_Del p.L1430* 0.22 TCGA-BR-7707-01 3 121976124 121976124 T C CASR Missense_Mutation p.F128L 0.09 tolerated(0.32) probably_damaging(0.914) TCGA-BR-7707-01 3 122591386 122591386 T - DIRC2 Frame_Shift_Del p.L423* 0.28 TCGA-BR-7707-01 3 126723974 126723974 C T PLXNA1 Silent p.G595G 0.30 TCGA-BR-7707-01 3 129007805 129007805 C T HMCES Missense_Mutation p.R98C 0.05 deleterious(0) probably_damaging(0.983) TCGA-BR-7707-01 3 130735042 130735042 C A ASTE1 Missense_Mutation p.G552V 0.07 tolerated(0.08) probably_damaging(1) TCGA-BR-7707-01 3 131208833 131208833 A T MRPL3 Missense_Mutation p.I187N 0.34 deleterious(0) probably_damaging(0.976) TCGA-BR-7707-01 3 132418282 132418283 - T NPHP3 Frame_Shift_Ins p.H634Tfs*37 0.20 TCGA-BR-7707-01 3 133169277 133169277 G A BFSP2 Missense_Mutation p.R287Q 0.23 tolerated(0.28) benign(0.084) TCGA-BR-7707-01 3 139085492 139085492 C A COPB2 Missense_Mutation p.R601M 0.11 deleterious(0.01) possibly_damaging(0.897) TCGA-BR-7707-01 3 140785534 140785534 C T SPSB4 Silent p.Y196Y 0.11 TCGA-BR-7707-01 3 141688962 141688962 C G TFDP2 Missense_Mutation p.E229Q 0.06 deleterious(0.03) probably_damaging(0.959) TCGA-BR-7707-01 3 142261555 142261555 A - ATR Frame_Shift_Del p.F1134Lfs*6 0.11 TCGA-BR-7707-01 3 150931878 150931878 A G P2RY14 Missense_Mutation p.F76S 0.33 deleterious(0) probably_damaging(0.993) TCGA-BR-7707-01 3 151134107 151134107 A G MED12L Missense_Mutation p.Q2067R 0.10 tolerated_low_confidence(0.47) benign(0.006) TCGA-BR-7707-01 3 15116196 15116196 C T ZFYVE20 Missense_Mutation p.R483H 0.20 tolerated(0.15) benign(0.035) TCGA-BR-7707-01 3 154017707 154017707 G A DHX36 Missense_Mutation p.A490V 0.07 deleterious(0) probably_damaging(0.997) TCGA-BR-7707-01 3 154032899 154032899 A G DHX36 Missense_Mutation p.L180S 0.10 deleterious(0) possibly_damaging(0.613) TCGA-BR-7707-01 3 155203168 155203168 A T PLCH1 Missense_Mutation p.I992N 0.11 tolerated_low_confidence(0.2) benign(0.001) TCGA-BR-7707-01 3 155481323 155481323 A C C3orf33 Missense_Mutation p.F247V 0.26 deleterious_low_confidence(0) possibly_damaging(0.805) TCGA-BR-7707-01 3 157188202 157188202 G T VEPH1 Silent p.L85L 0.05 TCGA-BR-7707-01 3 158369926 158369926 C T GFM1 Missense_Mutation p.A244V 0.11 tolerated(0.21) benign(0.035) TCGA-BR-7707-01 3 167068281 167068283 TCT - ZBBX In_Frame_Del p.E151del 0.27 TCGA-BR-7707-01 3 170725002 170725002 C T SLC2A2 Missense_Mutation p.A183T 0.18 tolerated(0.47) benign(0.02) TCGA-BR-7707-01 3 171965347 171965347 C T FNDC3B Missense_Mutation p.R97C 0.08 deleterious(0) probably_damaging(1) TCGA-BR-7707-01 3 180334112 180334112 G A CCDC39 Missense_Mutation p.R876C 0.21 tolerated(0.07) possibly_damaging(0.534) TCGA-BR-7707-01 3 183857942 183857942 G T EIF2B5 Missense_Mutation p.E280D 0.12 deleterious(0) benign(0.234) TCGA-BR-7707-01 3 186954203 186954203 G T MASP1 Missense_Mutation p.L486M 0.36 deleterious(0) probably_damaging(0.999) TCGA-BR-7707-01 3 186978565 186978565 C T MASP1 Missense_Mutation p.G171S 0.06 deleterious(0.03) probably_damaging(0.95) TCGA-BR-7707-01 3 192517004 192517004 T - MB21D2 Frame_Shift_Del p.N216Mfs*11 0.23 TCGA-BR-7707-01 3 193158373 193158373 A T ATP13A4 Missense_Mutation p.S831R 0.11 deleterious(0.01) possibly_damaging(0.745) TCGA-BR-7707-01 3 195486030 195486030 G A MUC4 Missense_Mutation p.T4984M 0.11 benign(0.275) TCGA-BR-7707-01 3 195925221 195925221 G - ZDHHC19 Frame_Shift_Del p.P292Qfs*61 0.29 TCGA-BR-7707-01 3 196509660 196509660 A G PAK2 Missense_Mutation p.K48R 0.09 tolerated(0.23) benign(0.005) TCGA-BR-7707-01 3 196735572 196735572 T C MFI2 Missense_Mutation p.D569G 0.09 deleterious(0) probably_damaging(0.99) TCGA-BR-7707-01 3 38595862 38595862 T C SCN5A Missense_Mutation p.E1574G 0.15 deleterious(0) possibly_damaging(0.812) TCGA-BR-7707-01 3 3887325 3887325 C T LRRN1 Nonsense_Mutation p.R334* 0.29 TCGA-BR-7707-01 3 41275204 41275204 G - CTNNB1 Frame_Shift_Del p.E458Kfs*14 0.25 TCGA-BR-7707-01 3 43121611 43121611 C T POMGNT2 Missense_Mutation p.R438Q 0.33 tolerated(0.25) probably_damaging(0.996) TCGA-BR-7707-01 3 4418024 4418024 A G SUMF1 Missense_Mutation p.M335T 0.07 deleterious(0) probably_damaging(0.997) TCGA-BR-7707-01 3 46063400 46063400 A - XCR1 Frame_Shift_Del p.Y14Tfs*33 0.25 TCGA-BR-7707-01 3 47324459 47324459 G T KLHL18 Missense_Mutation p.V2L 0.16 tolerated_low_confidence(0.17) benign(0.014) TCGA-BR-7707-01 3 47958085 47958085 A G MAP4 Missense_Mutation p.V411A 0.09 tolerated(0.4) benign(0.012) TCGA-BR-7707-01 3 48629343 48629343 G A COL7A1 Missense_Mutation p.R449W 0.29 unknown(0) TCGA-BR-7707-01 3 49050093 49050093 G A WDR6 Missense_Mutation p.V406I 0.33 tolerated(0.28) benign(0.013) TCGA-BR-7707-01 3 49050138 49050138 C A WDR6 Missense_Mutation p.Q421K 0.09 tolerated(0.14) benign(0.085) TCGA-BR-7707-01 3 49153200 49153200 G T USP19 Missense_Mutation p.P548H 0.10 deleterious(0.03) possibly_damaging(0.722) TCGA-BR-7707-01 3 49394982 49394982 T C GPX1 Missense_Mutation p.T151A 0.15 tolerated(0.08) benign(0.001) TCGA-BR-7707-01 3 49743008 49743008 C - RNF123 Frame_Shift_Del p.E736Rfs*21 0.08 TCGA-BR-7707-01 3 49759315 49759315 A G GMPPB Missense_Mutation p.V345A 0.09 tolerated(0.74) benign(0.205) TCGA-BR-7707-01 3 49879890 49879890 C A TRAIP Nonsense_Mutation p.E167* 0.05 TCGA-BR-7707-01 3 49898891 49898891 A G CAMKV Missense_Mutation p.I141T 0.06 deleterious(0) possibly_damaging(0.875) TCGA-BR-7707-01 3 50153486 50153486 G A RBM5 Intron 0.15 TCGA-BR-7707-01 3 50385556 50385556 G A NPRL2 Missense_Mutation p.R311W 0.20 deleterious(0) probably_damaging(0.999) TCGA-BR-7707-01 3 50603087 50603087 C T C3orf18 Missense_Mutation p.R15H 0.29 tolerated_low_confidence(0.47) benign(0.002) TCGA-BR-7707-01 3 51352538 51352538 A - DOCK3 Frame_Shift_Del p.N1129Mfs*11 0.12 TCGA-BR-7707-01 3 51667644 51667644 T G RAD54L2 Missense_Mutation p.F293V 0.10 deleterious(0) probably_damaging(0.975) TCGA-BR-7707-01 3 51669679 51669679 G A RAD54L2 Missense_Mutation p.E405K 0.26 deleterious(0) benign(0.323) TCGA-BR-7707-01 3 52257056 52257056 G A TLR9 Missense_Mutation p.R580C 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-BR-7707-01 3 52400778 52400778 G A DNAH1 Silent p.T1880T 0.21 TCGA-BR-7707-01 3 52568610 52568610 C T NT5DC2 5'Flank 0.26 TCGA-BR-7707-01 3 53699823 53699823 T - CACNA1D Frame_Shift_Del p.F303Lfs*7 0.10 TCGA-BR-7707-01 3 54930918 54930918 C T CACNA2D3 Intron 0.08 TCGA-BR-7707-01 3 55922525 55922525 G T ERC2 Missense_Mutation p.T819N 0.10 tolerated(0.11) possibly_damaging(0.79) TCGA-BR-7707-01 3 57543266 57543266 G A PDE12 Missense_Mutation p.R387Q 0.19 tolerated(0.07) probably_damaging(0.953) TCGA-BR-7707-01 3 57743556 57743556 T G SLMAP Missense_Mutation p.F60V 0.08 deleterious(0) benign(0.287) TCGA-BR-7707-01 3 64138947 64138947 C T PRICKLE2 Missense_Mutation p.R233H 0.09 deleterious(0) probably_damaging(0.99) TCGA-BR-7707-01 3 72799562 72799562 C A SHQ1 Missense_Mutation p.G536V 0.25 deleterious_low_confidence(0.02) possibly_damaging(0.779) TCGA-BR-7707-01 3 73453461 73453461 A G PDZRN3 Missense_Mutation p.V335A 0.10 deleterious(0.01) possibly_damaging(0.6) TCGA-BR-7707-01 3 77651597 77651597 A T ROBO2 Missense_Mutation p.M1047L 0.05 tolerated(0.36) benign(0.008) TCGA-BR-7707-01 3 8590348 8590348 T C LMCD1 Missense_Mutation p.L161P 0.10 deleterious(0) probably_damaging(1) TCGA-BR-7707-01 3 9517751 9517751 C T SETD5 Silent p.V1435V 0.38 TCGA-BR-7707-01 3 9789064 9789064 C T BRPF1 3'UTR 0.09 TCGA-BR-7707-01 3 9990353 9990353 C A PRRT3 Intron 0.11 TCGA-BR-7707-01 4 100009879 100009879 G A ADH5 5'UTR 0.12 TCGA-BR-7707-01 4 100065369 100065369 C A ADH4 Missense_Mutation p.G2V 0.09 deleterious(0.04) benign(0.02) TCGA-BR-7707-01 4 101947156 101947156 G A PPP3CA Nonsense_Mutation p.R478* 0.06 TCGA-BR-7707-01 4 106367600 106367600 G A PPA2 Silent p.R127R 0.31 TCGA-BR-7707-01 4 106600674 106600674 T C ARHGEF38 3'UTR 0.22 TCGA-BR-7707-01 4 111554122 111554122 C T PITX2 Silent p.A11A 0.23 TCGA-BR-7707-01 4 114468833 114468833 G A CAMK2D Intron 0.27 TCGA-BR-7707-01 4 120221496 120221497 - A C4orf3 Frame_Shift_Ins p.L198Ffs*20 0.20 TCGA-BR-7707-01 4 122782657 122782657 A G BBS7 Splice_Site p.X114_splice 0.24 TCGA-BR-7707-01 4 126242390 126242390 T C FAT4 Silent p.P1608P 0.27 TCGA-BR-7707-01 4 130023786 130023786 C T C4orf33 Silent p.H7H 0.06 TCGA-BR-7707-01 4 1348977 1348977 G A UVSSA Missense_Mutation p.V374I 0.11 tolerated(0.11) benign(0.015) TCGA-BR-7707-01 4 1389008 1389008 G A CRIPAK Missense_Mutation p.G237R 0.09 tolerated(0.17) probably_damaging(0.991) TCGA-BR-7707-01 4 139140496 139140496 C T SLC7A11 Missense_Mutation p.A224T 0.05 deleterious(0.05) possibly_damaging(0.597) TCGA-BR-7707-01 4 141598177 141598177 G A TBC1D9 Silent p.H310H 0.08 TCGA-BR-7707-01 4 142143532 142143532 A - ZNF330 Frame_Shift_Del p.K5Rfs*18 0.33 TCGA-BR-7707-01 4 149356545 149356545 G T NR3C2 Missense_Mutation p.P490T 0.06 deleterious(0) possibly_damaging(0.908) TCGA-BR-7707-01 4 149357244 149357244 C T NR3C2 Missense_Mutation p.V257M 0.06 deleterious_low_confidence(0.04) possibly_damaging(0.861) TCGA-BR-7707-01 4 153268090 153268090 T - FBXW7 Frame_Shift_Del p.M240Cfs*14 0.14 TCGA-BR-7707-01 4 154507424 154507424 C T KIAA0922 Missense_Mutation p.L459F 0.22 tolerated(0.22) benign(0.093) TCGA-BR-7707-01 4 155506728 155506728 C T FGA Missense_Mutation p.S618N 0.07 tolerated(0.16) benign(0.028) TCGA-BR-7707-01 4 155670333 155670333 T C LRAT 3'UTR 0.12 TCGA-BR-7707-01 4 156651343 156651343 G A GUCY1A3 Missense_Mutation p.G678D 0.12 tolerated_low_confidence(0.8) benign(0.005) TCGA-BR-7707-01 4 156721176 156721176 G A GUCY1B3 Silent p.R375R 0.10 TCGA-BR-7707-01 4 167675864 167675864 G T SPOCK3 Silent p.I245I 0.29 TCGA-BR-7707-01 4 169341447 169341448 - A DDX60L Frame_Shift_Ins p.T827Yfs*22 0.25 TCGA-BR-7707-01 4 170057551 170057551 G - SH3RF1 Frame_Shift_Del p.P329Lfs*31 0.09 TCGA-BR-7707-01 4 175160171 175160171 A G FBXO8 Missense_Mutation p.L249S 0.08 deleterious(0) probably_damaging(0.998) TCGA-BR-7707-01 4 184932048 184932048 C T STOX2 Missense_Mutation p.A686V 0.18 tolerated_low_confidence(0.68) benign(0.03) TCGA-BR-7707-01 4 186336378 186336378 C - UFSP2 Frame_Shift_Del p.N208Ifs*3 0.09 TCGA-BR-7707-01 4 186997812 186997812 C T TLR3 Silent p.G13G 0.34 TCGA-BR-7707-01 4 187077174 187077174 A - FAM149A Frame_Shift_Del p.K136Nfs*40 0.28 TCGA-BR-7707-01 4 187158011 187158011 A C KLKB1 Missense_Mutation p.E135D 0.10 deleterious(0.05) benign(0.045) TCGA-BR-7707-01 4 1976611 1976611 C A WHSC1 Missense_Mutation p.P1132T 0.10 deleterious(0) probably_damaging(1) TCGA-BR-7707-01 4 2082734 2082734 T C POLN Missense_Mutation p.M780V 0.06 deleterious(0.04) possibly_damaging(0.768) TCGA-BR-7707-01 4 22422539 22422539 A G GPR125 Silent p.V593V 0.08 TCGA-BR-7707-01 4 23831131 23831131 A G PPARGC1A Silent p.H169H 0.09 TCGA-BR-7707-01 4 26417098 26417098 T - RBPJ Frame_Shift_Del p.C68Afs*38 0.18 TCGA-BR-7707-01 4 2701952 2701952 G A FAM193A Silent p.A1060A 0.28 TCGA-BR-7707-01 4 2948140 2948140 A G NOP14 Missense_Mutation p.V545A 0.07 tolerated(0.07) possibly_damaging(0.578) TCGA-BR-7707-01 4 38696378 38696378 C T KLF3 Missense_Mutation p.S236L 0.07 tolerated(0.09) benign(0.229) TCGA-BR-7707-01 4 38990475 38990475 C T TMEM156 Nonsense_Mutation p.W245* 0.25 TCGA-BR-7707-01 4 40428030 40428030 T C RBM47 Missense_Mutation p.N558S 0.08 deleterious_low_confidence(0.05) benign(0.016) TCGA-BR-7707-01 4 40439902 40439903 - CG RBM47 Frame_Shift_Ins p.A337Rfs*38 0.10 TCGA-BR-7707-01 4 41621389 41621390 AG - LIMCH1 Frame_Shift_Del p.E292Gfs*29 0.30 TCGA-BR-7707-01 4 41694373 41694373 C T LIMCH1 Silent p.N1066N 0.05 TCGA-BR-7707-01 4 436908 436908 A G ZNF721 Missense_Mutation p.C450R 0.12 deleterious(0.01) possibly_damaging(0.873) TCGA-BR-7707-01 4 501310 501310 C T PIGG Silent p.S229S 0.11 TCGA-BR-7707-01 4 5687115 5687115 G T EVC2 Silent p.T266T 0.06 TCGA-BR-7707-01 4 57340534 57340534 T C SRP72 Missense_Mutation p.M196T 0.13 tolerated(0.19) benign(0.007) TCGA-BR-7707-01 4 57861565 57861567 GAG - POLR2B In_Frame_Del p.G244del 0.25 TCGA-BR-7707-01 4 6619137 6619137 G A MAN2B2 Missense_Mutation p.R911H 0.24 tolerated(0.37) benign(0.008) TCGA-BR-7707-01 4 66356280 66356281 - CA EPHA5 Frame_Shift_Ins p.E406Vfs*17 0.10 TCGA-BR-7707-01 4 7043253 7043253 G A CCDC96 Silent p.A471A 0.30 TCGA-BR-7707-01 4 70620845 70620845 T - SULT1B1 Frame_Shift_Del p.I31Lfs*12 0.08 TCGA-BR-7707-01 4 71588444 71588444 C T RUFY3 Missense_Mutation p.P52S 0.06 tolerated(0.14) probably_damaging(0.988) TCGA-BR-7707-01 4 727562 727562 C T PCGF3 Silent p.T31T 0.08 TCGA-BR-7707-01 4 75065537 75065537 A G MTHFD2L Missense_Mutation p.N160D 0.12 tolerated(0.13) benign(0.133) TCGA-BR-7707-01 4 8229226 8229226 C T SH3TC1 Missense_Mutation p.A602V 0.24 deleterious(0.02) benign(0.356) TCGA-BR-7707-01 4 88116474 88116474 A G KLHL8 Splice_Site p.X72_splice 0.21 TCGA-BR-7707-01 4 88403698 88403698 T C SPARCL1 Missense_Mutation p.T516A 0.07 deleterious(0.01) probably_damaging(0.988) TCGA-BR-7707-01 4 88411935 88411935 G T SPARCL1 Missense_Mutation p.P463T 0.09 deleterious(0) probably_damaging(0.987) TCGA-BR-7707-01 4 89649843 89649843 A G FAM13A Intron 0.26 TCGA-BR-7707-01 4 91230124 91230124 G T CCSER1 Missense_Mutation p.C230F 0.42 tolerated(0.05) benign(0.14) TCGA-BR-7707-01 4 98762072 98762072 C T STPG2 Silent p.A352A 0.12 TCGA-BR-7707-01 5 101583012 101583012 A G SLCO4C1 Silent p.F585F 0.10 TCGA-BR-7707-01 5 109103321 109103321 T C MAN2A1 Silent p.S307S 0.22 TCGA-BR-7707-01 5 112399756 112399756 C T MCC Missense_Mutation p.S713N 0.13 tolerated(0.26) probably_damaging(0.961) TCGA-BR-7707-01 5 115803293 115803293 T C SEMA6A Missense_Mutation p.H627R 0.12 tolerated(0.4) benign(0.001) TCGA-BR-7707-01 5 1235625 1235625 G A SLC6A18 Missense_Mutation p.A157T 0.30 tolerated(0.53) benign(0.079) TCGA-BR-7707-01 5 132086771 132086771 G A SEPT8 3'UTR 0.20 TCGA-BR-7707-01 5 133477913 133477913 C G TCF7 Missense_Mutation p.P225A 0.33 deleterious(0) probably_damaging(0.981) TCGA-BR-7707-01 5 135692494 135692494 G A TRPC7 Silent p.H194H 0.27 TCGA-BR-7707-01 5 137056165 137056165 A G KLHL3 Silent p.N41N 0.30 TCGA-BR-7707-01 5 137515455 137515455 C T KIF20A Missense_Mutation p.A29V 0.08 deleterious(0.01) possibly_damaging(0.839) TCGA-BR-7707-01 5 137781024 137781024 A G REEP2 Silent p.R173R 0.28 TCGA-BR-7707-01 5 138269810 138269810 G T CTNNA1 3'UTR 0.13 TCGA-BR-7707-01 5 13901461 13901461 A G DNAH5 Missense_Mutation p.L651P 0.23 probably_damaging(0.928) TCGA-BR-7707-01 5 139740369 139740369 T C SLC4A9 Missense_Mutation p.I92T 0.19 tolerated_low_confidence(0.06) benign(0.01) TCGA-BR-7707-01 5 140176295 140176295 G A PCDHA2 Silent p.P582P 0.35 TCGA-BR-7707-01 5 140182244 140182244 G A PCDHA3 Missense_Mutation p.A488T 0.06 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-BR-7707-01 5 140222046 140222046 T C PCDHA8 Silent p.G380G 0.04 TCGA-BR-7707-01 5 140223200 140223200 C T PCDHA8 Missense_Mutation p.P765L 0.24 deleterious_low_confidence(0.01) benign(0.024) TCGA-BR-7707-01 5 140230509 140230509 T - PCDHA9 Intron 0.28 TCGA-BR-7707-01 5 140248772 140248772 C T PCDHA11 Silent p.S28S 0.35 TCGA-BR-7707-01 5 140262962 140262962 C T PCDHA13 Missense_Mutation p.A370V 0.08 deleterious_low_confidence(0.03) probably_damaging(0.999) TCGA-BR-7707-01 5 140263639 140263639 G A PCDHA13 Missense_Mutation p.A596T 0.10 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-BR-7707-01 5 140515685 140515685 C T PCDHB5 Silent p.S223S 0.28 TCGA-BR-7707-01 5 140516972 140516972 G A PCDHB5 Silent p.S652S 0.21 TCGA-BR-7707-01 5 140517397 140517397 T C PCDHB5 Missense_Mutation p.L794S 0.08 deleterious_low_confidence(0) benign(0.009) TCGA-BR-7707-01 5 140559119 140559119 G A PCDHB8 Missense_Mutation p.A502T 0.09 tolerated_low_confidence(0.13) benign(0.004) TCGA-BR-7707-01 5 140562190 140562190 T C PCDHB16 Missense_Mutation p.V19A 0.07 deleterious_low_confidence(0.04) possibly_damaging(0.523) TCGA-BR-7707-01 5 140574321 140574321 T C PCDHB10 Silent p.G732G 0.07 TCGA-BR-7707-01 5 140590121 140590121 C T PCDHB12 Missense_Mutation p.R548C 0.10 deleterious_low_confidence(0.02) probably_damaging(0.988) TCGA-BR-7707-01 5 140603564 140603564 G A PCDHB14 Missense_Mutation p.G163R 0.10 deleterious_low_confidence(0) probably_damaging(1) TCGA-BR-7707-01 5 140737100 140737100 C T PCDHGA4 Missense_Mutation p.T778M 0.23 tolerated_low_confidence(0.1) possibly_damaging(0.484) TCGA-BR-7707-01 5 140769364 140769364 A C PCDHGB4 Missense_Mutation p.Q638P 0.13 deleterious(0) benign(0.208) TCGA-BR-7707-01 5 140864818 140864818 C T PCDHGC4 Silent p.Y26Y 0.15 TCGA-BR-7707-01 5 14487781 14487781 C - TRIO Frame_Shift_Del p.V2351Cfs*62 0.22 TCGA-BR-7707-01 5 145609441 145609441 G A RBM27 Missense_Mutation p.R186H 0.23 deleterious(0) probably_damaging(0.994) TCGA-BR-7707-01 5 146077585 146077585 C T PPP2R2B Nonsense_Mutation p.W100* 0.07 TCGA-BR-7707-01 5 146788353 146788353 T C DPYSL3 Missense_Mutation p.T324A 0.14 tolerated(0.11) benign(0.005) TCGA-BR-7707-01 5 148886637 148886637 T G CSNK1A1 Missense_Mutation p.E298D 0.09 tolerated_low_confidence(1) probably_damaging(0.999) TCGA-BR-7707-01 5 149375905 149375905 T C TIGD6 Missense_Mutation p.N3D 0.29 tolerated_low_confidence(0.25) benign(0) TCGA-BR-7707-01 5 149460351 149460351 C T CSF1R Missense_Mutation p.A96T 0.27 tolerated(0.83) benign(0.001) TCGA-BR-7707-01 5 149751643 149751643 G A TCOF1 Silent p.A238A 0.11 TCGA-BR-7707-01 5 150887067 150887067 G A FAT2 Silent p.A4055A 0.09 TCGA-BR-7707-01 5 151043781 151043781 G A SPARC Silent p.T250T 0.10 TCGA-BR-7707-01 5 154181920 154181920 G A LARP1 Silent p.L613L 0.12 TCGA-BR-7707-01 5 16670981 16670981 G A MYO10 Missense_Mutation p.A1846V 0.18 tolerated(0.21) benign(0.055) TCGA-BR-7707-01 5 169506070 169506070 C T DOCK2 Missense_Mutation p.R1696W 0.32 deleterious(0) probably_damaging(0.983) TCGA-BR-7707-01 5 171520517 171520517 A G STK10 Missense_Mutation p.S485P 0.06 deleterious(0) possibly_damaging(0.524) TCGA-BR-7707-01 5 176078866 176078866 G - TSPAN17 Frame_Shift_Del p.A85Pfs*91 0.11 TCGA-BR-7707-01 5 176079825 176079825 G A TSPAN17 Missense_Mutation p.D123N 0.10 tolerated(0.11) benign(0.14) TCGA-BR-7707-01 5 176719126 176719126 G A NSD1 Missense_Mutation p.A2144T 0.11 deleterious(0.02) probably_damaging(0.919) TCGA-BR-7707-01 5 176825379 176825379 T G SLC34A1 3'UTR 0.09 TCGA-BR-7707-01 5 176966091 176966091 G A FAM193B Missense_Mutation p.R90C 0.25 deleterious(0.01) probably_damaging(0.997) TCGA-BR-7707-01 5 177031391 177031391 G A B4GALT7 Missense_Mutation p.A88T 0.36 tolerated(0.34) benign(0.008) TCGA-BR-7707-01 5 177633829 177633829 G - HNRNPAB Frame_Shift_Del p.G160Vfs*2 0.07 TCGA-BR-7707-01 5 177633848 177633848 C A HNRNPAB Missense_Mutation p.A165D 0.24 deleterious(0.01) probably_damaging(0.979) TCGA-BR-7707-01 5 177642329 177642329 T C PHYKPL Missense_Mutation p.M344V 0.19 tolerated(0.08) benign(0.005) TCGA-BR-7707-01 5 178413950 178413950 G A GRM6 Silent p.N463N 0.17 TCGA-BR-7707-01 5 178996343 178996343 G T RUFY1 Missense_Mutation p.G249W 0.14 deleterious(0) probably_damaging(1) TCGA-BR-7707-01 5 180486592 180486592 G A BTNL9 Silent p.P446P 0.26 TCGA-BR-7707-01 5 24509701 24509701 G A CDH10 Silent p.D410D 0.29 TCGA-BR-7707-01 5 24537692 24537693 - T CDH10 Frame_Shift_Ins p.T108Nfs*3 0.12 TCGA-BR-7707-01 5 32243648 32243648 C T MTMR12 Missense_Mutation p.S360N 0.08 deleterious(0) benign(0.423) TCGA-BR-7707-01 5 36985317 36985317 T A NIPBL Missense_Mutation p.S679T 0.29 tolerated_low_confidence(0.75) benign(0) TCGA-BR-7707-01 5 37010248 37010248 T - NIPBL Frame_Shift_Del p.L1495Yfs*94 0.08 TCGA-BR-7707-01 5 37167306 37167306 T - C5orf42 Frame_Shift_Del p.T2415Hfs*19 0.18 TCGA-BR-7707-01 5 39203057 39203057 C T FYB Silent p.A12A 0.31 TCGA-BR-7707-01 5 39311417 39311417 G A C9 Silent p.R311R 0.35 TCGA-BR-7707-01 5 41149541 41149541 C T C6 Missense_Mutation p.D809N 0.26 tolerated(0.51) benign(0.003) TCGA-BR-7707-01 5 52227966 52227966 G T ITGA1 Missense_Mutation p.S954I 0.37 tolerated(0.1) benign(0.2) TCGA-BR-7707-01 5 54527333 54527333 T C CCNO Missense_Mutation p.H308R 0.10 deleterious(0.04) possibly_damaging(0.636) TCGA-BR-7707-01 5 68805354 68805354 C T OCLN Missense_Mutation p.A146V 0.06 tolerated(0.25) probably_damaging(1) TCGA-BR-7707-01 5 70930984 70930984 A G MCCC2 Missense_Mutation p.I304V 0.09 tolerated_low_confidence(0.83) benign(0.002) TCGA-BR-7707-01 5 70939716 70939716 A - MCCC2 Frame_Shift_Del p.K383Rfs*55 0.08 TCGA-BR-7707-01 5 80548680 80548680 G T CKMT2 Missense_Mutation p.G107C 0.09 deleterious(0.02) probably_damaging(1) TCGA-BR-7707-01 5 89989724 89989724 G A GPR98 Missense_Mutation p.R2384Q 0.17 benign(0.001) TCGA-BR-7707-01 5 94030643 94030643 A G ANKRD32 Missense_Mutation p.T935A 0.10 deleterious(0.01) possibly_damaging(0.625) TCGA-BR-7707-01 5 94872520 94872520 C T TTC37 Splice_Site p.X251_splice 0.07 TCGA-BR-7707-01 5 96224907 96224907 C A ERAP2 Missense_Mutation p.P290T 0.10 deleterious(0) probably_damaging(0.99) TCGA-BR-7707-01 6 100838735 100838735 T - SIM1 Frame_Shift_Del p.K601Nfs*41 0.12 TCGA-BR-7707-01 6 100897247 100897247 C T SIM1 Missense_Mutation p.G179S 0.23 tolerated(0.05) possibly_damaging(0.83) TCGA-BR-7707-01 6 101296172 101296173 - T ASCC3 Frame_Shift_Ins p.T218Nfs*9 0.23 TCGA-BR-7707-01 6 108366005 108366005 T C OSTM1 Missense_Mutation p.Q330R 0.12 deleterious(0.01) possibly_damaging(0.734) TCGA-BR-7707-01 6 109481813 109481814 AA - CEP57L1 Frame_Shift_Del p.H354Ffs*4 0.10 TCGA-BR-7707-01 6 110501676 110501676 C T CDC40 Missense_Mutation p.A10V 0.10 tolerated(0.19) unknown(0) TCGA-BR-7707-01 6 114379310 114379310 C T HS3ST5 Missense_Mutation p.R51H 0.13 tolerated(0.33) benign(0) TCGA-BR-7707-01 6 117113344 117113344 T C GPRC6A Silent p.V914V 0.12 TCGA-BR-7707-01 6 127796642 127796642 C T SOGA3 Silent p.A843A 0.28 TCGA-BR-7707-01 6 127899903 127899903 A G C6orf58 Missense_Mutation p.D125G 0.05 tolerated(0.06) possibly_damaging(0.883) TCGA-BR-7707-01 6 1313402 1313402 T - FOXQ1 Frame_Shift_Del p.F156Sfs*247 0.19 TCGA-BR-7707-01 6 132014640 132014640 C T ENPP3 Nonsense_Mutation p.R430* 0.09 TCGA-BR-7707-01 6 134350539 134350539 C T SLC2A12 Missense_Mutation p.V142I 0.09 tolerated(0.74) benign(0.032) TCGA-BR-7707-01 6 135515019 135515019 T C MYB Missense_Mutation p.I269T 0.26 tolerated(0.07) possibly_damaging(0.879) TCGA-BR-7707-01 6 139488147 139488147 G - HECA Frame_Shift_Del p.G335Dfs*27 0.11 TCGA-BR-7707-01 6 142409703 142409703 C T NMBR Silent p.P31P 0.31 TCGA-BR-7707-01 6 142688974 142688974 G A GPR126 Silent p.A124A 0.07 TCGA-BR-7707-01 6 143091478 143091478 G A HIVEP2 Silent p.Y1466Y 0.36 TCGA-BR-7707-01 6 143755071 143755071 C G ADAT2 Missense_Mutation p.W83C 0.07 tolerated(0.1) probably_damaging(0.999) TCGA-BR-7707-01 6 146262928 146262928 A G SHPRH Missense_Mutation p.V774A 0.07 deleterious(0.01) probably_damaging(0.981) TCGA-BR-7707-01 6 146351348 146351348 C T GRM1 Missense_Mutation p.T232M 0.25 deleterious(0) probably_damaging(0.998) TCGA-BR-7707-01 6 146755562 146755562 C T GRM1 Missense_Mutation p.P1072L 0.32 tolerated_low_confidence(0.2) benign(0.001) TCGA-BR-7707-01 6 149285605 149285605 T C UST Missense_Mutation p.L196S 0.09 deleterious(0.01) benign(0.278) TCGA-BR-7707-01 6 151857473 151857473 G A CCDC170 Silent p.S26S 0.24 TCGA-BR-7707-01 6 152583314 152583314 A G SYNE1 Silent p.P6275P 0.08 TCGA-BR-7707-01 6 155579107 155579107 T G TFB1M Missense_Mutation p.S302R 0.07 tolerated(1) benign(0.01) TCGA-BR-7707-01 6 160670319 160670319 G A SLC22A2 Silent p.Y257Y 0.09 TCGA-BR-7707-01 6 161006078 161006078 G A LPA Missense_Mutation p.A1430V 0.24 tolerated(0.1) possibly_damaging(0.686) TCGA-BR-7707-01 6 165846524 165846524 T A PDE10A Missense_Mutation p.I211F 0.06 deleterious(0.01) possibly_damaging(0.614) TCGA-BR-7707-01 6 169637338 169637338 C T THBS2 Silent p.V468V 0.30 TCGA-BR-7707-01 6 17551823 17551823 G T CAP2 Missense_Mutation p.Q446H 0.30 tolerated(0.09) benign(0.049) TCGA-BR-7707-01 6 24145884 24145884 G A NRSN1 Missense_Mutation p.V100M 0.11 tolerated(0.15) benign(0.009) TCGA-BR-7707-01 6 28121148 28121148 G A ZKSCAN8 Missense_Mutation p.A364T 0.25 tolerated(0.36) benign(0.132) TCGA-BR-7707-01 6 28472268 28472268 C T GPX6 Missense_Mutation p.C156Y 0.19 deleterious(0) probably_damaging(0.999) TCGA-BR-7707-01 6 28543694 28543694 G A SCAND3 Missense_Mutation p.A263V 0.28 deleterious_low_confidence(0.03) benign(0.121) TCGA-BR-7707-01 6 28829611 28829611 A G XXbac-BPG308K3.6 RNA 0.14 TCGA-BR-7707-01 6 28876796 28876796 A - TRIM27 Frame_Shift_Del p.F280Lfs*8 0.17 TCGA-BR-7707-01 6 31609931 31609931 C T BAG6 Missense_Mutation p.G735R 0.06 tolerated(0.56) probably_damaging(0.998) TCGA-BR-7707-01 6 31626870 31626870 C T C6orf47 Silent p.E285E 0.04 TCGA-BR-7707-01 6 31630313 31630314 - C GPANK1 Frame_Shift_Ins p.W268Lfs*12 0.28 TCGA-BR-7707-01 6 31936512 31936512 T C SKIV2L Missense_Mutation p.L1040P 0.11 deleterious(0) probably_damaging(0.949) TCGA-BR-7707-01 6 32159189 32159189 C - GPSM3 Frame_Shift_Del p.G146Vfs*18 0.22 TCGA-BR-7707-01 6 32166763 32166763 C T NOTCH4 Missense_Mutation p.R1492Q 0.33 tolerated(0.33) benign(0.012) TCGA-BR-7707-01 6 32942267 32942267 C T BRD2 Silent p.L20L 0.10 TCGA-BR-7707-01 6 33272822 33272822 G A TAPBP Missense_Mutation p.A271V 0.39 deleterious(0.02) probably_damaging(0.999) TCGA-BR-7707-01 6 33648141 33648141 C T ITPR3 Silent p.C1420C 0.12 TCGA-BR-7707-01 6 33650343 33650343 C T ITPR3 Missense_Mutation p.R1507C 0.24 deleterious(0) probably_damaging(0.957) TCGA-BR-7707-01 6 34214513 34214513 A G C6orf1 Silent p.L86L 0.10 TCGA-BR-7707-01 6 3751713 3751713 C T PXDC1 Missense_Mutation p.G18D 0.20 tolerated_low_confidence(1) benign(0.003) TCGA-BR-7707-01 6 39284590 39284590 A T KCNK16 Missense_Mutation p.L210H 0.06 deleterious(0) probably_damaging(1) TCGA-BR-7707-01 6 42985279 42985279 G A KLHDC3 Silent p.L59L 0.15 TCGA-BR-7707-01 6 43226849 43226849 C A TTBK1 Missense_Mutation p.L364M 0.21 probably_damaging(0.999) TCGA-BR-7707-01 6 44374080 44374081 - A CDC5L Frame_Shift_Ins p.D263Rfs*12 0.33 TCGA-BR-7707-01 6 46658738 46658738 G T TDRD6 Missense_Mutation p.R958I 0.08 deleterious(0.01) benign(0.103) TCGA-BR-7707-01 6 51777171 51777171 G T PKHD1 Missense_Mutation p.P2109T 0.04 deleterious(0) probably_damaging(0.999) TCGA-BR-7707-01 6 56471451 56471451 A - DST Intron 0.11 TCGA-BR-7707-01 6 56484076 56484076 T C DST Intron 0.05 TCGA-BR-7707-01 6 56484309 56484309 A T DST Intron 0.27 TCGA-BR-7707-01 6 69653793 69653793 A C BAI3 Silent p.R368R 0.10 TCGA-BR-7707-01 6 72006204 72006204 C - OGFRL1 Frame_Shift_Del p.L164* 0.20 TCGA-BR-7707-01 6 78172393 78172393 G A HTR1B Missense_Mutation p.T243M 0.30 tolerated(0.1) possibly_damaging(0.631) TCGA-BR-7707-01 6 84913717 84913717 T C KIAA1009 Silent p.K223K 0.11 TCGA-BR-7707-01 6 85453993 85453993 G C TBX18 Missense_Mutation p.D330E 0.13 deleterious(0.01) benign(0.001) TCGA-BR-7707-01 6 90360519 90360519 C T MDN1 Silent p.A5321A 0.24 TCGA-BR-7707-01 6 90402711 90402711 C T MDN1 Silent p.L3346L 0.21 TCGA-BR-7707-01 6 97720928 97720928 T C MMS22L Silent p.S117S 0.05 TCGA-BR-7707-01 7 100175478 100175478 G A LRCH4 Missense_Mutation p.R336W 0.24 deleterious(0) probably_damaging(0.997) TCGA-BR-7707-01 7 100410487 100410487 A G EPHB4 Missense_Mutation p.I667T 0.06 deleterious(0.03) probably_damaging(1) TCGA-BR-7707-01 7 100678679 100678679 C T MUC17 Missense_Mutation p.P1328S 0.25 unknown(0) TCGA-BR-7707-01 7 100680822 100680822 G A MUC17 Missense_Mutation p.R2042Q 0.32 unknown(0) TCGA-BR-7707-01 7 100732127 100732127 G T TRIM56 Missense_Mutation p.G512W 0.11 deleterious(0) probably_damaging(1) TCGA-BR-7707-01 7 101837172 101837172 T C CUX1 Splice_Site p.X386_splice 0.13 TCGA-BR-7707-01 7 102604003 102604003 C T FBXL13 Missense_Mutation p.R234Q 0.17 tolerated(0.23) benign(0.009) TCGA-BR-7707-01 7 106876896 106876896 T G COG5 Missense_Mutation p.Q728P 0.11 deleterious(0) probably_damaging(0.986) TCGA-BR-7707-01 7 111368525 111368525 C T DOCK4 Silent p.P1902P 0.22 TCGA-BR-7707-01 7 115594657 115594657 T - TFEC Frame_Shift_Del p.K141Rfs*42 0.28 TCGA-BR-7707-01 7 121019010 121019010 A G FAM3C Silent p.S24S 0.09 TCGA-BR-7707-01 7 122194640 122194640 A G CADPS2 Missense_Mutation p.V480A 0.10 deleterious(0) possibly_damaging(0.593) TCGA-BR-7707-01 7 124404242 124404242 C T GPR37 Silent p.A263A 0.20 TCGA-BR-7707-01 7 127222705 127222705 C T GCC1 Missense_Mutation p.R564Q 0.18 deleterious(0.01) benign(0.005) TCGA-BR-7707-01 7 127235583 127235583 G A FSCN3 Missense_Mutation p.V123M 0.42 deleterious(0.01) probably_damaging(0.987) TCGA-BR-7707-01 7 128035288 128035288 C A IMPDH1 Missense_Mutation p.K434N 0.08 tolerated(0.18) possibly_damaging(0.893) TCGA-BR-7707-01 7 128488118 128488118 C T FLNC Missense_Mutation p.R1526C 0.27 tolerated(0.07) benign(0.052) TCGA-BR-7707-01 7 128488733 128488733 C T FLNC Missense_Mutation p.R1567W 0.18 deleterious(0) probably_damaging(1) TCGA-BR-7707-01 7 141418950 141418950 G A WEE2 Missense_Mutation p.E222K 0.06 deleterious(0.03) possibly_damaging(0.73) TCGA-BR-7707-01 7 141747669 141747669 G A MGAM Silent p.T861T 0.45 TCGA-BR-7707-01 7 142566330 142566330 G - EPHB6 Frame_Shift_Del p.G708Afs*7 0.22 TCGA-BR-7707-01 7 146536911 146536911 G A CNTNAP2 Missense_Mutation p.S106N 0.07 deleterious(0) probably_damaging(1) TCGA-BR-7707-01 7 148427309 148427309 A G CUL1 Missense_Mutation p.Y32C 0.14 deleterious(0.02) probably_damaging(0.997) TCGA-BR-7707-01 7 148484179 148484179 C T CUL1 Silent p.D482D 0.13 TCGA-BR-7707-01 7 148489867 148489867 C T CUL1 Missense_Mutation p.A619V 0.26 tolerated(0.16) benign(0) TCGA-BR-7707-01 7 150742328 150742328 C T ABCB8 Silent p.G683G 0.33 TCGA-BR-7707-01 7 150935141 150935141 G A CHPF2 Missense_Mutation p.A565T 0.32 deleterious(0) benign(0.174) TCGA-BR-7707-01 7 151873936 151873936 T C KMT2C Missense_Mutation p.T2868A 0.09 benign(0.001) TCGA-BR-7707-01 7 151874713 151874713 G A KMT2C Nonsense_Mutation p.R2609* 0.12 TCGA-BR-7707-01 7 154862764 154862764 C T HTR5A-AS1 Missense_Mutation p.A84T 0.12 tolerated_low_confidence(0.39) possibly_damaging(0.695) TCGA-BR-7707-01 7 156469082 156469082 G A RNF32 Intron 0.29 TCGA-BR-7707-01 7 156976641 156976642 TC - UBE3C Frame_Shift_Del p.P356Cfs*11 0.17 TCGA-BR-7707-01 7 157369377 157369377 G A PTPRN2 Missense_Mutation p.T904M 0.38 deleterious(0) probably_damaging(1) TCGA-BR-7707-01 7 1607366 1607366 T C PSMG3 Missense_Mutation p.R113G 0.11 deleterious(0.01) benign(0.012) TCGA-BR-7707-01 7 16815913 16815913 C T TSPAN13 Silent p.G47G 0.25 TCGA-BR-7707-01 7 17378743 17378743 A - AHR Frame_Shift_Del p.N433Mfs*14 0.11 TCGA-BR-7707-01 7 19765226 19765226 G T TMEM196 Missense_Mutation p.L124I 0.08 deleterious(0.01) unknown(0) TCGA-BR-7707-01 7 21627750 21627750 C A DNAH11 Missense_Mutation p.S593R 0.12 benign(0.381) TCGA-BR-7707-01 7 2309235 2309235 C T SNX8 Missense_Mutation p.G194R 0.27 tolerated(0.06) probably_damaging(0.992) TCGA-BR-7707-01 7 23205486 23205486 C T KLHL7 Missense_Mutation p.P369L 0.10 deleterious(0.01) benign(0.069) TCGA-BR-7707-01 7 25194759 25194759 G A C7orf31 Missense_Mutation p.R156C 0.10 deleterious(0.01) benign(0.073) TCGA-BR-7707-01 7 2687618 2687618 C T TTYH3 Silent p.L218L 0.10 TCGA-BR-7707-01 7 2976789 2976789 C T CARD11 Missense_Mutation p.R408H 0.22 deleterious(0) probably_damaging(0.999) TCGA-BR-7707-01 7 30821830 30821830 T C FAM188B Splice_Site p.X140_splice 0.11 TCGA-BR-7707-01 7 31617485 31617485 C T CCDC129 Nonsense_Mutation p.R229* 0.13 TCGA-BR-7707-01 7 36423468 36423468 C A KIAA0895 Nonsense_Mutation p.E60* 0.15 TCGA-BR-7707-01 7 39606016 39606016 T C YAE1D1 5'UTR 0.28 TCGA-BR-7707-01 7 42012169 42012169 G T GLI3 Missense_Mutation p.L624I 0.22 deleterious(0) probably_damaging(0.999) TCGA-BR-7707-01 7 42063102 42063102 C T GLI3 Missense_Mutation p.A488T 0.12 tolerated(0.78) benign(0.001) TCGA-BR-7707-01 7 45144619 45144619 G A TBRG4 Intron 0.10 TCGA-BR-7707-01 7 45928343 45928343 C T IGFBP1 Missense_Mutation p.A31V 0.23 deleterious(0.05) possibly_damaging(0.902) TCGA-BR-7707-01 7 47385927 47385927 C T TNS3 Missense_Mutation p.G770E 0.20 deleterious(0.02) benign(0.382) TCGA-BR-7707-01 7 50531075 50531075 T - DDC Frame_Shift_Del p.I433Sfs*98 0.26 TCGA-BR-7707-01 7 50607613 50607613 C A DDC Missense_Mutation p.W105C 0.30 deleterious(0) probably_damaging(1) TCGA-BR-7707-01 7 550457 550457 G A PDGFA Missense_Mutation p.R148C 0.27 deleterious(0) probably_damaging(0.999) TCGA-BR-7707-01 7 5568128 5568128 G A ACTB Missense_Mutation p.R196C 0.27 deleterious_low_confidence(0.03) possibly_damaging(0.58) TCGA-BR-7707-01 7 56126114 56126114 C T CCT6A Missense_Mutation p.A262V 0.09 deleterious(0.02) benign(0.123) TCGA-BR-7707-01 7 57194337 57194337 T C ZNF479 Missense_Mutation p.D43G 0.03 deleterious(0.01) probably_damaging(0.938) TCGA-BR-7707-01 7 6066563 6066563 C T EIF2AK1 Silent p.L520L 0.21 TCGA-BR-7707-01 7 6449932 6449932 C - DAGLB Frame_Shift_Del p.G550Afs*6 0.20 TCGA-BR-7707-01 7 65445384 65445384 C T GUSB Missense_Mutation p.V75M 0.33 tolerated(0.11) benign(0.011) TCGA-BR-7707-01 7 6639538 6639539 - T C7orf26 Frame_Shift_Ins p.L222Ffs*34 0.19 TCGA-BR-7707-01 7 6647637 6647637 G A C7orf26 Missense_Mutation p.A399T 0.24 tolerated_low_confidence(0.56) benign(0) TCGA-BR-7707-01 7 72849269 72849269 C T FZD9 Missense_Mutation p.T311M 0.28 deleterious(0) probably_damaging(0.966) TCGA-BR-7707-01 7 73183675 73183675 T G CLDN3 3'UTR 0.29 TCGA-BR-7707-01 7 76888377 76888378 - A CCDC146 Frame_Shift_Ins p.V253Sfs*19 0.21 TCGA-BR-7707-01 7 819634 819634 G A HEATR2 Missense_Mutation p.A762T 0.32 tolerated(0.08) benign(0.192) TCGA-BR-7707-01 7 86468905 86468905 G C GRM3 Missense_Mutation p.C692S 0.07 tolerated(0.31) probably_damaging(1) TCGA-BR-7707-01 7 87759712 87759712 C A ADAM22 Missense_Mutation p.H255N 0.09 deleterious(0.05) probably_damaging(0.963) TCGA-BR-7707-01 7 95167036 95167036 T C ASB4 Missense_Mutation p.Y416H 0.07 deleterious(0) probably_damaging(1) TCGA-BR-7707-01 7 96653686 96653686 C T DLX5 Missense_Mutation p.A84T 0.30 tolerated(0.21) probably_damaging(0.994) TCGA-BR-7707-01 7 99027333 99027333 C T ATP5J2-PTCD1 Missense_Mutation p.A280T 0.14 deleterious(0) probably_damaging(0.998) TCGA-BR-7707-01 7 99654893 99654893 G A ZSCAN21 Silent p.L88L 0.09 TCGA-BR-7707-01 8 100050671 100050671 T - VPS13B Frame_Shift_Del p.L58* 0.23 TCGA-BR-7707-01 8 100115270 100115270 G A VPS13B Missense_Mutation p.V168I 0.23 deleterious(0) benign(0.433) TCGA-BR-7707-01 8 100523354 100523354 G A VPS13B Missense_Mutation p.G1441D 0.06 tolerated(0.11) probably_damaging(0.994) TCGA-BR-7707-01 8 101075898 101075899 - A RGS22 Frame_Shift_Ins p.L366Ffs*3 0.17 TCGA-BR-7707-01 8 10466430 10466430 A G RP1L1 Silent p.A1726A 0.07 TCGA-BR-7707-01 8 10467229 10467229 G A RP1L1 Missense_Mutation p.T1460M 0.12 unknown(0) TCGA-BR-7707-01 8 10467747 10467747 C T RP1L1 Silent p.S1287S 0.06 TCGA-BR-7707-01 8 107719362 107719362 G A OXR1 Missense_Mutation p.G539E 0.13 tolerated(0.21) benign(0.009) TCGA-BR-7707-01 8 110474074 110474074 C T PKHD1L1 Silent p.C2440C 0.18 TCGA-BR-7707-01 8 11702621 11702621 G T CTSB 3'UTR 0.09 TCGA-BR-7707-01 8 121379470 121379471 - C COL14A1 Frame_Shift_Ins p.G1716Wfs*45 0.18 TCGA-BR-7707-01 8 122627114 122627114 A C HAS2 Missense_Mutation p.D298E 0.08 tolerated(1) benign(0.12) TCGA-BR-7707-01 8 131124486 131124486 G A ASAP1 Missense_Mutation p.A752V 0.10 deleterious(0.01) benign(0.016) TCGA-BR-7707-01 8 133150155 133150155 G A KCNQ3 Silent p.S559S 0.19 TCGA-BR-7707-01 8 133192508 133192508 A G KCNQ3 Missense_Mutation p.S225P 0.10 deleterious(0.01) probably_damaging(0.993) TCGA-BR-7707-01 8 133883659 133883659 C G TG Missense_Mutation p.T114S 0.05 tolerated(0.29) benign(0.125) TCGA-BR-7707-01 8 133953742 133953742 C T TG Missense_Mutation p.R1730C 0.24 deleterious(0) possibly_damaging(0.614) TCGA-BR-7707-01 8 134050798 134050798 A C SLA Missense_Mutation p.F308V 0.10 tolerated_low_confidence(0.1) probably_damaging(0.969) TCGA-BR-7707-01 8 135614834 135614834 C T ZFAT Silent p.A376A 0.17 TCGA-BR-7707-01 8 139737648 139737649 - G COL22A1 Frame_Shift_Ins p.G726Wfs*101 0.08 TCGA-BR-7707-01 8 139833603 139833603 C T COL22A1 Missense_Mutation p.G341S 0.09 unknown(0) TCGA-BR-7707-01 8 143425535 143425535 G A TSNARE1 Silent p.R179R 0.22 TCGA-BR-7707-01 8 143694607 143694607 G T ARC Silent p.P342P 0.14 TCGA-BR-7707-01 8 144378289 144378289 G - ZNF696 Frame_Shift_Del p.E150Rfs*211 0.14 TCGA-BR-7707-01 8 144661939 144661939 G A EEF1D 3'UTR 0.22 TCGA-BR-7707-01 8 144804319 144804319 G - MAPK15 Frame_Shift_Del p.G513Vfs*? 0.17 TCGA-BR-7707-01 8 144940356 144940356 G A EPPK1 Missense_Mutation p.R2356C 0.04 probably_damaging(1) TCGA-BR-7707-01 8 144991545 144991545 C A PLEC Silent p.T4285T 0.16 TCGA-BR-7707-01 8 144993391 144993391 T C PLEC Missense_Mutation p.D3670G 0.11 probably_damaging(0.996) TCGA-BR-7707-01 8 144995498 144995498 G A PLEC Missense_Mutation p.R2968W 0.18 probably_damaging(0.983) TCGA-BR-7707-01 8 144995508 144995508 G A PLEC Silent p.D2964D 0.09 TCGA-BR-7707-01 8 145108223 145108223 C T OPLAH Silent p.L920L 0.26 TCGA-BR-7707-01 8 145626419 145626419 G A CPSF1 Silent p.D146D 0.39 TCGA-BR-7707-01 8 146066890 146066891 AC - ZNF7 Frame_Shift_Del p.D133Efs*18 0.17 TCGA-BR-7707-01 8 15998375 15998375 T C MSR1 Intron 0.13 TCGA-BR-7707-01 8 16884826 16884826 G A MICU3 Missense_Mutation p.R13Q 0.08 deleterious_low_confidence(0.03) benign(0) TCGA-BR-7707-01 8 17100550 17100550 A G CNOT7 Missense_Mutation p.Y88H 0.08 tolerated(0.11) benign(0.019) TCGA-BR-7707-01 8 1842674 1842674 C T ARHGEF10 Missense_Mutation p.A459V 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-BR-7707-01 8 20110716 20110716 C T LZTS1 Silent p.S242S 0.30 TCGA-BR-7707-01 8 21767412 21767412 A C DOK2 Missense_Mutation p.C217G 0.27 deleterious(0) probably_damaging(1) TCGA-BR-7707-01 8 21978706 21978706 G A HR Missense_Mutation p.R747C 0.09 deleterious(0.02) possibly_damaging(0.776) TCGA-BR-7707-01 8 22079025 22079025 G A PHYHIP Silent p.H278H 0.21 TCGA-BR-7707-01 8 22105999 22105999 C T POLR3D Silent p.L164L 0.07 TCGA-BR-7707-01 8 22106136 22106136 T C POLR3D Missense_Mutation p.M210T 0.07 tolerated(0.2) benign(0.003) TCGA-BR-7707-01 8 22332543 22332543 A - PPP3CC Frame_Shift_Del p.N44Tfs*4 0.19 TCGA-BR-7707-01 8 22476350 22476350 C A CCAR2 Missense_Mutation p.D781E 0.06 tolerated(1) benign(0.099) TCGA-BR-7707-01 8 23294634 23294634 C T ENTPD4 Missense_Mutation p.R396Q 0.21 tolerated(0.52) benign(0.202) TCGA-BR-7707-01 8 24349501 24349501 C A ADAM7 Missense_Mutation p.P481H 0.21 deleterious(0.01) possibly_damaging(0.682) TCGA-BR-7707-01 8 27320543 27320543 C T CHRNA2 Missense_Mutation p.V473M 0.08 deleterious(0) probably_damaging(1) TCGA-BR-7707-01 8 27320855 27320855 C - CHRNA2 Frame_Shift_Del p.A369Pfs*11 0.29 TCGA-BR-7707-01 8 28906535 28906535 T C HMBOX1 Silent p.D365D 0.04 TCGA-BR-7707-01 8 30032612 30032612 G A DCTN6 Missense_Mutation p.V34M 0.10 deleterious(0) probably_damaging(0.998) TCGA-BR-7707-01 8 30969166 30969166 T C WRN Silent p.S708S 0.16 TCGA-BR-7707-01 8 30982058 30982058 G A WRN Missense_Mutation p.R884H 0.16 tolerated(0.61) benign(0.001) TCGA-BR-7707-01 8 35606112 35606112 G A UNC5D Missense_Mutation p.V612I 0.18 deleterious(0.01) benign(0.13) TCGA-BR-7707-01 8 38006175 38006175 C T STAR Silent p.R54R 0.09 TCGA-BR-7707-01 8 38684796 38684796 C T TACC1 Silent p.A521A 0.15 TCGA-BR-7707-01 8 41572500 41572500 G A ANK1 Silent p.A598A 0.17 TCGA-BR-7707-01 8 41573238 41573238 G A ANK1 Missense_Mutation p.R545C 0.20 deleterious(0) probably_damaging(0.977) TCGA-BR-7707-01 8 42173805 42173805 C T IKBKB Missense_Mutation p.T293M 0.18 tolerated(0.11) benign(0.013) TCGA-BR-7707-01 8 48883979 48883979 A - MCM4 Frame_Shift_Del p.T629Qfs*18 0.24 TCGA-BR-7707-01 8 48887453 48887453 C T MCM4 Missense_Mutation p.R766W 0.09 deleterious(0) probably_damaging(0.996) TCGA-BR-7707-01 8 53852656 53852656 G A NPBWR1 Silent p.L63L 0.11 TCGA-BR-7707-01 8 54141891 54141891 A G OPRK1 Missense_Mutation p.L370P 0.09 tolerated(0.25) benign(0) TCGA-BR-7707-01 8 56015076 56015076 A - XKR4 Frame_Shift_Del p.M11* 0.21 TCGA-BR-7707-01 8 57025820 57025820 C T MOS Missense_Mutation p.G241D 0.15 deleterious(0) probably_damaging(1) TCGA-BR-7707-01 8 61654351 61654351 C T CHD7 Silent p.G120G 0.10 TCGA-BR-7707-01 8 67342063 67342063 G T RRS1 Missense_Mutation p.G233W 0.09 deleterious(0) probably_damaging(1) TCGA-BR-7707-01 8 68140265 68140265 T C ARFGEF1 Missense_Mutation p.Y1175C 0.11 deleterious(0) probably_damaging(0.999) TCGA-BR-7707-01 8 69033268 69033268 C T PREX2 Silent p.I1236I 0.20 TCGA-BR-7707-01 8 73480092 73480092 G - KCNB2 Frame_Shift_Del p.G43Afs*40 0.14 TCGA-BR-7707-01 8 73934527 73934527 A C TERF1 Missense_Mutation p.N205T 0.16 tolerated(0.21) benign(0.124) TCGA-BR-7707-01 8 87683188 87683188 T G CNGB3 Missense_Mutation p.E159D 0.07 tolerated(0.18) possibly_damaging(0.533) TCGA-BR-7707-01 8 89128859 89128860 - T MMP16 Frame_Shift_Ins p.N320Kfs*2 0.18 TCGA-BR-7707-01 8 91643788 91643788 A - TMEM64 Frame_Shift_Del p.C315Vfs*6 0.12 TCGA-BR-7707-01 8 94746270 94746270 G A RBM12B Missense_Mutation p.P790L 0.16 tolerated_low_confidence(0.09) probably_damaging(0.982) TCGA-BR-7707-01 8 95419749 95419749 T G RAD54B Missense_Mutation p.K233N 0.06 deleterious(0.01) possibly_damaging(0.467) TCGA-BR-7707-01 8 99054406 99054406 C T RPL30 Intron 0.07 TCGA-BR-7707-01 8 99961546 99961546 G A OSR2 Silent p.A122A 0.04 TCGA-BR-7707-01 9 100849499 100849499 T C TRIM14 3'UTR 0.09 TCGA-BR-7707-01 9 102590657 102590657 G A NR4A3 Silent p.Q122Q 0.06 TCGA-BR-7707-01 9 1056535 1056535 T C DMRT2 Silent p.S316S 0.22 TCGA-BR-7707-01 9 107361654 107361654 A G OR13C5 Missense_Mutation p.L14P 0.15 deleterious(0) probably_damaging(0.999) TCGA-BR-7707-01 9 109689883 109689883 G A ZNF462 Silent p.T1230T 0.08 TCGA-BR-7707-01 9 112018740 112018740 G A EPB41L4B Missense_Mutation p.A258V 0.23 deleterious(0) probably_damaging(0.999) TCGA-BR-7707-01 9 116136221 116136221 G A HDHD3 Silent p.D138D 0.24 TCGA-BR-7707-01 9 116842 116842 C T FOXD4 Silent p.S426S 0.08 TCGA-BR-7707-01 9 123421695 123421695 A G MEGF9 Missense_Mutation p.C254R 0.25 deleterious(0) probably_damaging(1) TCGA-BR-7707-01 9 123636883 123636883 A G PHF19 Missense_Mutation p.V46A 0.06 deleterious(0) probably_damaging(0.994) TCGA-BR-7707-01 9 123787797 123787797 T C C5 Missense_Mutation p.Y312C 0.09 tolerated(0.12) possibly_damaging(0.827) TCGA-BR-7707-01 9 125377434 125377434 C T OR1Q1 Silent p.L140L 0.05 TCGA-BR-7707-01 9 125746881 125746881 G A RABGAP1 Missense_Mutation p.G90S 0.17 tolerated(0.86) benign(0.001) TCGA-BR-7707-01 9 127302452 127302454 TTC - NR6A1 In_Frame_Del p.E152del 0.26 TCGA-BR-7707-01 9 127911974 127911974 G A PPP6C Missense_Mutation p.T336M 0.21 tolerated(0.1) benign(0.04) TCGA-BR-7707-01 9 129148907 129148907 T C MVB12B Missense_Mutation p.F127L 0.10 deleterious(0) probably_damaging(0.999) TCGA-BR-7707-01 9 130166038 130166038 G A SLC2A8 Missense_Mutation p.V275I 0.24 tolerated(1) benign(0.007) TCGA-BR-7707-01 9 130688241 130688241 C T PIP5KL1 Missense_Mutation p.C223Y 0.14 deleterious(0) probably_damaging(1) TCGA-BR-7707-01 9 130911883 130911883 C A LCN2 Missense_Mutation p.L27M 0.06 tolerated(0.17) benign(0.061) TCGA-BR-7707-01 9 131191243 131191243 G A CERCAM Missense_Mutation p.R333H 0.24 deleterious(0) probably_damaging(0.988) TCGA-BR-7707-01 9 132396585 132396585 G T NTMT1 Missense_Mutation p.G139C 0.06 tolerated(0.11) probably_damaging(1) TCGA-BR-7707-01 9 132741597 132741597 T G FNBP1 Missense_Mutation p.K66T 0.07 deleterious(0.01) benign(0.037) TCGA-BR-7707-01 9 132866711 132866711 G A GPR107 Missense_Mutation p.V382I 0.27 deleterious(0.02) possibly_damaging(0.759) TCGA-BR-7707-01 9 133760613 133760613 C - ABL1 Frame_Shift_Del p.V1000Ffs*88 0.13 TCGA-BR-7707-01 9 134397547 134397547 G A POMT1 Missense_Mutation p.A669T 0.24 deleterious(0) possibly_damaging(0.625) TCGA-BR-7707-01 9 135462770 135462770 G A BARHL1 Missense_Mutation p.R174H 0.25 deleterious(0.03) probably_damaging(0.943) TCGA-BR-7707-01 9 135762810 135762810 C T C9orf9 Missense_Mutation p.L67F 0.23 tolerated(0.21) benign(0.299) TCGA-BR-7707-01 9 136198852 136198852 G A SURF6 Silent p.G313G 0.25 TCGA-BR-7707-01 9 136265620 136265620 G A C9orf96 Silent p.L387L 0.25 TCGA-BR-7707-01 9 136319618 136319618 C T ADAMTS13 Silent p.L1042L 0.21 TCGA-BR-7707-01 9 136319619 136319619 G A ADAMTS13 Missense_Mutation p.D1043N 0.28 tolerated(0.33) benign(0.056) TCGA-BR-7707-01 9 136595252 136595252 G A SARDH Missense_Mutation p.R250W 0.20 deleterious(0) possibly_damaging(0.901) TCGA-BR-7707-01 9 136599205 136599205 C T SARDH Missense_Mutation p.A31T 0.09 tolerated_low_confidence(0.73) benign(0.001) TCGA-BR-7707-01 9 136662843 136662843 G A VAV2 Nonsense_Mutation p.Q309* 0.21 TCGA-BR-7707-01 9 137600438 137600438 C A COL5A1 Intron 0.07 TCGA-BR-7707-01 9 137982158 137982158 C T OLFM1 Missense_Mutation p.R72C 0.11 deleterious(0) possibly_damaging(0.898) TCGA-BR-7707-01 9 138438712 138438712 T G OBP2A Missense_Mutation p.V54G 0.17 deleterious(0) probably_damaging(0.946) TCGA-BR-7707-01 9 138656935 138656935 G A KCNT1 Missense_Mutation p.R365H 0.19 tolerated(0.11) possibly_damaging(0.841) TCGA-BR-7707-01 9 139250158 139250158 C T GPSM1 Missense_Mutation p.P491L 0.13 tolerated(0.06) benign(0.017) TCGA-BR-7707-01 9 139262099 139262099 G A CARD9 Missense_Mutation p.T420M 0.33 tolerated(0.24) benign(0.001) TCGA-BR-7707-01 9 139370070 139370070 C T SEC16A Missense_Mutation p.M666I 0.10 deleterious(0.04) probably_damaging(0.971) TCGA-BR-7707-01 9 139393707 139393707 A G NOTCH1 Missense_Mutation p.L1980P 0.07 deleterious(0) probably_damaging(1) TCGA-BR-7707-01 9 139411769 139411769 G A NOTCH1 Missense_Mutation p.R504C 0.20 tolerated(0.07) possibly_damaging(0.773) TCGA-BR-7707-01 9 139975220 139975220 C - UAP1L1 Frame_Shift_Del p.R421Afs*59 0.21 TCGA-BR-7707-01 9 140069716 140069716 C A ANAPC2 Missense_Mutation p.Q743H 0.07 deleterious(0.02) possibly_damaging(0.719) TCGA-BR-7707-01 9 140109259 140109259 C - NDOR1 Frame_Shift_Del p.T287Rfs*105 0.15 TCGA-BR-7707-01 9 140329487 140329487 G A ENTPD8 Missense_Mutation p.A456V 0.16 tolerated(0.12) benign(0.015) TCGA-BR-7707-01 9 14842654 14842654 C - FREM1 Frame_Shift_Del p.L470Sfs*56 0.08 TCGA-BR-7707-01 9 14859265 14859265 G T FREM1 Missense_Mutation p.P183T 0.05 deleterious(0) probably_damaging(1) TCGA-BR-7707-01 9 17466781 17466781 T C CNTLN Silent p.S1249S 0.07 TCGA-BR-7707-01 9 18928992 18928992 C T FAM154A Silent p.Q161Q 0.10 TCGA-BR-7707-01 9 2186173 2186173 G T SMARCA2 Missense_Mutation p.E1513D 0.09 unknown(0) TCGA-BR-7707-01 9 2827100 2827100 A - KIAA0020 Frame_Shift_Del p.F336Lfs*12 0.10 TCGA-BR-7707-01 9 32492458 32492458 G A DDX58 Missense_Mutation p.P168S 0.07 deleterious(0.03) probably_damaging(0.987) TCGA-BR-7707-01 9 32632915 32632915 C T TAF1L Missense_Mutation p.R888H 0.18 deleterious(0) probably_damaging(0.998) TCGA-BR-7707-01 9 32984853 32984853 A G APTX Silent p.V182V 0.09 TCGA-BR-7707-01 9 33265075 33265075 A T CHMP5 5'UTR 0.22 TCGA-BR-7707-01 9 33294870 33294870 G A NFX1 Missense_Mutation p.G160S 0.17 tolerated(0.9) benign(0.005) TCGA-BR-7707-01 9 33442228 33442229 AT - AQP3 Intron 0.25 TCGA-BR-7707-01 9 33466695 33466695 C A NOL6 Missense_Mutation p.G655C 0.10 deleterious(0.03) probably_damaging(1) TCGA-BR-7707-01 9 33469527 33469527 G A NOL6 Silent p.L233L 0.05 TCGA-BR-7707-01 9 33797977 33797977 C T PRSS3 Silent p.A174A 0.17 TCGA-BR-7707-01 9 34256530 34256530 G A KIF24 Silent p.N1025N 0.27 TCGA-BR-7707-01 9 34286630 34286630 C A KIF24 Silent p.V400V 0.24 TCGA-BR-7707-01 9 34372050 34372050 G A KIAA1161 Missense_Mutation p.R264C 0.23 deleterious(0) probably_damaging(0.988) TCGA-BR-7707-01 9 35377503 35377503 C T UNC13B Missense_Mutation p.R543W 0.06 deleterious(0) probably_damaging(0.959) TCGA-BR-7707-01 9 35680810 35680810 T C CA9 Missense_Mutation p.V433A 0.16 tolerated(0.18) benign(0.269) TCGA-BR-7707-01 9 35793058 35793058 G A NPR2 Missense_Mutation p.R218Q 0.28 tolerated(0.37) benign(0.015) TCGA-BR-7707-01 9 36117105 36117105 C T RECK Silent p.H728H 0.17 TCGA-BR-7707-01 9 36170316 36170316 C T CCIN Missense_Mutation p.R273W 0.15 deleterious(0) probably_damaging(0.999) TCGA-BR-7707-01 9 36657353 36657353 C T MELK Missense_Mutation p.T390I 0.05 tolerated(0.11) benign(0.197) TCGA-BR-7707-01 9 37780658 37780659 - A EXOSC3 3'UTR 0.09 TCGA-BR-7707-01 9 4117861 4117861 G A GLIS3 Silent p.A539A 0.07 TCGA-BR-7707-01 9 4719173 4719173 G A AK3 Nonsense_Mutation p.R136* 0.35 TCGA-BR-7707-01 9 70993145 70993145 A G PGM5 Missense_Mutation p.I98V 0.15 deleterious(0.01) possibly_damaging(0.573) TCGA-BR-7707-01 9 711848 711848 C T KANK1 Missense_Mutation p.T361M 0.11 deleterious(0.05) benign(0.27) TCGA-BR-7707-01 9 72131597 72131597 C T APBA1 Missense_Mutation p.R177H 0.25 deleterious_low_confidence(0.05) possibly_damaging(0.556) TCGA-BR-7707-01 9 74526630 74526630 G T C9orf85 5'UTR 0.05 TCGA-BR-7707-01 9 7798586 7798586 T C TMEM261 Missense_Mutation p.Y109C 0.08 deleterious(0.04) possibly_damaging(0.794) TCGA-BR-7707-01 9 79635083 79635083 G A FOXB2 Silent p.P171P 0.18 TCGA-BR-7707-01 9 82333808 82333808 G A TLE4 Silent p.T504T 0.24 TCGA-BR-7707-01 9 84226773 84226773 C T TLE1 Missense_Mutation p.A389T 0.18 tolerated(0.08) benign(0.064) TCGA-BR-7707-01 9 8499702 8499702 T - PTPRD Frame_Shift_Del p.N756Mfs*10 0.19 TCGA-BR-7707-01 9 86900448 86900448 A C SLC28A3 Missense_Mutation p.S487A 0.05 tolerated(0.12) benign(0.268) TCGA-BR-7707-01 9 87317265 87317266 - A NTRK2 Frame_Shift_Ins p.I98Nfs*12 0.09 TCGA-BR-7707-01 9 95599890 95599890 C T ANKRD19P RNA 0.19 TCGA-BR-7707-01 9 97369188 97369190 TTT - FBP1 In_Frame_Del p.K206del 0.22 TCGA-BR-7707-01 9 98684626 98684626 A G ERCC6L2 Missense_Mutation p.S458G 0.10 deleterious(0.02) possibly_damaging(0.88) TCGA-BR-7707-01 9 99697671 99697671 C T NUTM2G Missense_Mutation p.R259W 0.30 tolerated(0.17) benign(0.02) TCGA-BR-7707-01 X 100078931 100078931 A T CSTF2 Missense_Mutation p.Q167H 0.07 deleterious(0.01) probably_damaging(0.996) TCGA-BR-7707-01 X 100292924 100292924 G T TRMT2B Silent p.L140L 0.25 TCGA-BR-7707-01 X 100349693 100349693 G A TMEM35 Silent p.G84G 0.06 TCGA-BR-7707-01 X 100400187 100400187 A C CENPI Missense_Mutation p.K567T 0.07 tolerated(1) benign(0.002) TCGA-BR-7707-01 X 100880023 100880023 T C ARMCX3 Silent p.A18A 0.10 TCGA-BR-7707-01 X 102931753 102931753 G - MORF4L2 Frame_Shift_Del p.P68Lfs*5 0.17 TCGA-BR-7707-01 X 102962291 102962291 C T GLRA4 Missense_Mutation p.R412Q 0.25 deleterious_low_confidence(0.01) benign(0.001) TCGA-BR-7707-01 X 104464985 104464985 C T TEX13A Missense_Mutation p.E33K 0.14 tolerated(0.08) benign(0.027) TCGA-BR-7707-01 X 105881026 105881027 - A CXorf57 Frame_Shift_Ins p.N484Kfs*7 0.24 TCGA-BR-7707-01 X 105970509 105970509 C T RNF128 Silent p.R122R 0.25 TCGA-BR-7707-01 X 106184843 106184843 G A MORC4 Missense_Mutation p.R894W 0.35 deleterious(0) benign(0.386) TCGA-BR-7707-01 X 107866040 107866040 G A COL4A5 Missense_Mutation p.E968K 0.23 unknown(0) TCGA-BR-7707-01 X 107976205 107976205 C T IRS4 Missense_Mutation p.A1124T 0.10 deleterious_low_confidence(0.02) unknown(0) TCGA-BR-7707-01 X 107976243 107976244 TC - IRS4 Frame_Shift_Del p.D1111Pfs*45 0.11 TCGA-BR-7707-01 X 107979509 107979509 T C IRS4 Silent p.A22A 0.35 TCGA-BR-7707-01 X 108708392 108708392 A G GUCY2F Silent p.P337P 0.06 TCGA-BR-7707-01 X 109694908 109694908 C A RGAG1 Missense_Mutation p.P355T 0.07 tolerated(1) benign(0.002) TCGA-BR-7707-01 X 109696506 109696506 A G RGAG1 Silent p.L887L 0.06 TCGA-BR-7707-01 X 110653321 110653321 A G DCX Silent p.R183R 0.15 TCGA-BR-7707-01 X 117907898 117907898 G A IL13RA1 Missense_Mutation p.V356I 0.25 tolerated(0.18) benign(0.016) TCGA-BR-7707-01 X 118603924 118603924 C T SLC25A5 Missense_Mutation p.R138C 0.09 deleterious(0.02) possibly_damaging(0.779) TCGA-BR-7707-01 X 119243144 119243144 C A RHOXF1 3'UTR 0.24 TCGA-BR-7707-01 X 122538696 122538696 C T GRIA3 Silent p.D477D 0.05 TCGA-BR-7707-01 X 125299634 125299634 G T DCAF12L2 Missense_Mutation p.L92M 0.17 deleterious(0.01) probably_damaging(0.953) TCGA-BR-7707-01 X 125686437 125686437 G A DCAF12L1 Missense_Mutation p.A52V 0.19 tolerated(1) benign(0) TCGA-BR-7707-01 X 135390962 135390962 A C GPR112 Missense_Mutation p.K9T 0.08 deleterious(0.01) benign(0.021) TCGA-BR-7707-01 X 135574170 135574170 T A BRS3 Missense_Mutation p.L279Q 0.26 deleterious(0) probably_damaging(0.992) TCGA-BR-7707-01 X 13785292 13785292 A G OFD1 Missense_Mutation p.I882M 0.06 tolerated(0.31) possibly_damaging(0.506) TCGA-BR-7707-01 X 13803832 13803832 C T GPM6B Missense_Mutation p.G93S 0.32 deleterious(0) probably_damaging(0.99) TCGA-BR-7707-01 X 138864718 138864718 G A ATP11C Missense_Mutation p.A650V 0.18 deleterious(0) possibly_damaging(0.689) TCGA-BR-7707-01 X 140985571 140985571 G A MAGEC3 Missense_Mutation p.A629T 0.18 deleterious(0.04) possibly_damaging(0.644) TCGA-BR-7707-01 X 144905442 144905442 A G SLITRK2 Missense_Mutation p.N500S 0.08 tolerated(0.16) possibly_damaging(0.823) TCGA-BR-7707-01 X 146312328 146312328 A C MIR506 RNA 0.30 TCGA-BR-7707-01 X 148049194 148049194 A C AFF2 Missense_Mutation p.K1080T 0.14 deleterious(0) probably_damaging(0.999) TCGA-BR-7707-01 X 148627143 148627143 C T CXorf40A Intron 0.30 TCGA-BR-7707-01 X 149937447 149937447 G - CD99L2 3'UTR 0.15 TCGA-BR-7707-01 X 151900176 151900176 T C MAGEA12 Missense_Mutation p.I209V 0.07 tolerated(0.06) possibly_damaging(0.7) TCGA-BR-7707-01 X 151909223 151909223 A - CSAG1 3'UTR 0.19 TCGA-BR-7707-01 X 152818575 152818575 G A ATP2B3 Missense_Mutation p.E636K 0.24 deleterious(0.01) probably_damaging(0.987) TCGA-BR-7707-01 X 153006123 153006123 A G ABCD1 Missense_Mutation p.E577G 0.08 tolerated(0.3) possibly_damaging(0.702) TCGA-BR-7707-01 X 153038720 153038720 G A PLXNB3 Missense_Mutation p.R1004H 0.25 tolerated(0.23) benign(0.005) TCGA-BR-7707-01 X 153048690 153048690 C - SRPK3 Frame_Shift_Del p.Q255Rfs*17 0.22 TCGA-BR-7707-01 X 153225829 153225829 A G HCFC1 Missense_Mutation p.L314P 0.12 tolerated(0.05) probably_damaging(0.998) TCGA-BR-7707-01 X 153281508 153281508 G A IRAK1 Missense_Mutation p.T426M 0.26 tolerated(0.19) benign(0.104) TCGA-BR-7707-01 X 15349630 15349630 G A PIGA Silent p.H141H 0.39 TCGA-BR-7707-01 X 153539311 153539311 G T TKTL1 Nonsense_Mutation p.G159* 0.13 TCGA-BR-7707-01 X 154007602 154007604 CTT - MPP1 In_Frame_Del p.K417del 0.25 TCGA-BR-7707-01 X 154490316 154490316 G T RAB39B Silent p.A138A 0.18 TCGA-BR-7707-01 X 154493486 154493486 C T RAB39B Missense_Mutation p.E30K 0.19 deleterious(0.01) benign(0.329) TCGA-BR-7707-01 X 15596275 15596275 C T ACE2 Missense_Mutation p.A412T 0.07 deleterious(0.01) possibly_damaging(0.89) TCGA-BR-7707-01 X 1719900 1719900 G A AKAP17A Missense_Mutation p.A501T 0.20 tolerated_low_confidence(0.71) unknown(0) TCGA-BR-7707-01 X 18221757 18221757 T C BEND2 Silent p.V257V 0.09 TCGA-BR-7707-01 X 18660170 18660170 A C RS1 Missense_Mutation p.I210S 0.15 deleterious(0) probably_damaging(0.947) TCGA-BR-7707-01 X 19031936 19031936 C T GPR64 Missense_Mutation p.E323K 0.13 tolerated(0.89) benign(0.01) TCGA-BR-7707-01 X 19041547 19041547 C T GPR64 Missense_Mutation p.A179T 0.08 deleterious_low_confidence(0.03) benign(0.199) TCGA-BR-7707-01 X 21627197 21627197 C T CNKSR2 Silent p.C718C 0.08 TCGA-BR-7707-01 X 26157824 26157824 G T MAGEB18 Missense_Mutation p.R241M 0.09 deleterious(0) possibly_damaging(0.61) TCGA-BR-7707-01 X 2840009 2840009 G A ARSD Missense_Mutation p.A84V 0.32 deleterious(0.02) possibly_damaging(0.793) TCGA-BR-7707-01 X 29973260 29973260 C T IL1RAPL1 Missense_Mutation p.R472W 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-BR-7707-01 X 29973572 29973572 A T IL1RAPL1 Missense_Mutation p.S576C 0.14 tolerated(0.09) probably_damaging(0.993) TCGA-BR-7707-01 X 30322636 30322636 A C NR0B1 3'UTR 0.09 TCGA-BR-7707-01 X 30849602 30849602 A G TAB3 Missense_Mutation p.F694S 0.08 deleterious(0) probably_damaging(0.972) TCGA-BR-7707-01 X 34961020 34961020 A G FAM47B Silent p.K24K 0.12 TCGA-BR-7707-01 X 3573188 3573188 A G PRKX Splice_Site p.X200_splice 0.10 TCGA-BR-7707-01 X 39913253 39913253 G - BCOR Frame_Shift_Del p.P1621Qfs*53 0.17 TCGA-BR-7707-01 X 39932794 39932794 G - BCOR Frame_Shift_Del p.P602Rfs*67 0.11 TCGA-BR-7707-01 X 41089041 41089041 A G USP9X Silent p.K2480K 0.35 TCGA-BR-7707-01 X 47269695 47269695 T C ZNF157 Silent p.D31D 0.08 TCGA-BR-7707-01 X 47478894 47478894 C T SYN1 Silent p.S78S 0.23 TCGA-BR-7707-01 X 47498485 47498485 G A ELK1 Missense_Mutation p.R155C 0.30 deleterious(0) possibly_damaging(0.847) TCGA-BR-7707-01 X 48681196 48681196 G A HDAC6 Missense_Mutation p.R835Q 0.25 tolerated(0.13) benign(0.041) TCGA-BR-7707-01 X 49066457 49066457 T - CACNA1F Frame_Shift_Del p.K1556Rfs*6 0.09 TCGA-BR-7707-01 X 50052659 50052659 C T CCNB3 Missense_Mutation p.T497I 0.09 tolerated(0.15) benign(0.11) TCGA-BR-7707-01 X 53105735 53105735 C - GPR173 5'UTR 0.35 TCGA-BR-7707-01 X 53172242 53172242 C T AL139396.1 RNA 0.30 TCGA-BR-7707-01 X 53247093 53247093 C T KDM5C Missense_Mutation p.R136Q 0.09 tolerated(0.09) possibly_damaging(0.808) TCGA-BR-7707-01 X 53436412 53436412 C T SMC1A Missense_Mutation p.R426Q 0.28 tolerated(0.15) benign(0.032) TCGA-BR-7707-01 X 53586416 53586416 C T HUWE1 Missense_Mutation p.R2605H 0.43 possibly_damaging(0.522) TCGA-BR-7707-01 X 54044103 54044103 G A PHF8 Missense_Mutation p.H185Y 0.21 tolerated(0.21) benign(0) TCGA-BR-7707-01 X 54162023 54162023 T C FAM120C Missense_Mutation p.R425G 0.21 tolerated(0.46) benign(0.08) TCGA-BR-7707-01 X 54482983 54482983 C T FGD1 Missense_Mutation p.A552T 0.16 tolerated(0.09) possibly_damaging(0.758) TCGA-BR-7707-01 X 55116967 55116967 A C PAGE2 Missense_Mutation p.E39D 0.12 tolerated(0.32) possibly_damaging(0.649) TCGA-BR-7707-01 X 55515232 55515232 C T USP51 Silent p.A47A 0.25 TCGA-BR-7707-01 X 57619668 57619668 C T ZXDB Missense_Mutation p.A396V 0.22 tolerated(0.13) possibly_damaging(0.594) TCGA-BR-7707-01 X 63557257 63557257 T - MTMR8 Frame_Shift_Del p.K331Rfs*5 0.21 TCGA-BR-7707-01 X 6451812 6451812 C T VCX3A Missense_Mutation p.E179K 0.26 tolerated(0.83) unknown(0) TCGA-BR-7707-01 X 68748853 68748853 G A FAM155B Nonsense_Mutation p.W293* 0.12 TCGA-BR-7707-01 X 7177678 7177678 T C STS Missense_Mutation p.L229P 0.09 tolerated(0.21) benign(0.082) TCGA-BR-7707-01 X 72667321 72667321 C - CDX4 Frame_Shift_Del p.P79Rfs*20 0.25 TCGA-BR-7707-01 X 72667571 72667571 G A CDX4 Missense_Mutation p.R161H 0.09 deleterious(0) probably_damaging(0.997) TCGA-BR-7707-01 X 76937066 76937066 G A ATRX Missense_Mutation p.P1228S 0.22 probably_damaging(0.971) TCGA-BR-7707-01 X 77381299 77381299 C A PGK1 Missense_Mutation p.P409H 0.10 deleterious(0) probably_damaging(0.998) TCGA-BR-7707-01 X 80532615 80532615 G A SH3BGRL Missense_Mutation p.A60T 0.09 tolerated(0.18) benign(0.002) TCGA-BR-7707-01 X 8522075 8522075 T C KAL1 Silent p.R424R 0.16 TCGA-BR-7707-01 X 92964422 92964422 G T FAM133A Missense_Mutation p.G2W 0.15 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BR-7707-01 X 92964569 92964569 A - FAM133A Frame_Shift_Del p.T53Qfs*6 0.09 TCGA-BR-7707-01 X 99663156 99663156 C T PCDH19 Missense_Mutation p.R147H 0.28 deleterious(0) probably_damaging(0.992) TCGA-BR-7715-01 10 115804636 115804636 C T ADRB1 Missense_Mutation p.R249C 0.12 deleterious(0) probably_damaging(0.951) TCGA-BR-7715-01 10 116225532 116225532 T C ABLIM1 Missense_Mutation p.I456V 0.39 deleterious(0.02) possibly_damaging(0.682) TCGA-BR-7715-01 10 118957007 118957007 T G KCNK18 Missense_Mutation p.V3G 0.13 deleterious(0.01) benign(0.004) TCGA-BR-7715-01 10 17026238 17026238 T C CUBN Missense_Mutation p.Q1464R 0.11 tolerated(0.14) probably_damaging(0.938) TCGA-BR-7715-01 10 37505290 37505290 A G ANKRD30A Silent p.K961K 0.18 TCGA-BR-7715-01 10 50532585 50532585 C T C10orf71 Silent p.T665T 0.09 TCGA-BR-7715-01 11 103870925 103870925 G A PDGFD Silent p.N61N 0.22 TCGA-BR-7715-01 11 119052817 119052817 C T NLRX1 Missense_Mutation p.P790L 0.23 deleterious(0.04) probably_damaging(0.973) TCGA-BR-7715-01 11 120335951 120335951 C T ARHGEF12 Silent p.S873S 0.14 TCGA-BR-7715-01 11 17743108 17743108 C T MYOD1 3'UTR 0.81 TCGA-BR-7715-01 11 18722659 18722659 C T TMEM86A Silent p.S67S 0.04 TCGA-BR-7715-01 11 31115605 31115605 T G DCDC1 Missense_Mutation p.I704L 0.08 deleterious(0.01) benign(0.106) TCGA-BR-7715-01 11 47198097 47198097 C T ARFGAP2 Missense_Mutation p.R54H 0.66 deleterious(0) probably_damaging(1) TCGA-BR-7715-01 11 47602281 47602281 C T NDUFS3 Intron 0.21 TCGA-BR-7715-01 11 4842656 4842656 C T OR51F2 Missense_Mutation p.S14L 0.16 tolerated(0.37) benign(0.001) TCGA-BR-7715-01 11 55873412 55873412 A C OR8H2 Missense_Mutation p.K298N 0.19 deleterious(0.01) probably_damaging(1) TCGA-BR-7715-01 11 62933530 62933530 A G SLC22A25 Missense_Mutation p.I424T 0.58 tolerated(1) benign(0.023) TCGA-BR-7715-01 12 3040238 3040238 A T TULP3 Missense_Mutation p.Q176H 0.24 tolerated(0.09) benign(0.031) TCGA-BR-7715-01 12 43822058 43822058 C T ADAMTS20 Missense_Mutation p.G1311R 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-BR-7715-01 12 56428541 56428541 T C IKZF4 Missense_Mutation p.L395P 0.38 deleterious(0.03) benign(0.015) TCGA-BR-7715-01 12 58125727 58125727 G A AGAP2 Silent p.S606S 0.46 TCGA-BR-7715-01 12 6161886 6161886 C T VWF Missense_Mutation p.R670H 0.29 deleterious(0.01) probably_damaging(0.994) TCGA-BR-7715-01 12 66742840 66742840 C T GRIP1 Missense_Mutation p.G1064S 0.11 tolerated_low_confidence(0.48) benign(0.002) TCGA-BR-7715-01 12 70004268 70004268 C - LRRC10 Frame_Shift_Del p.S118Afs*26 0.28 TCGA-BR-7715-01 13 113761182 113761182 G A F7 Missense_Mutation p.G30R 0.17 tolerated_low_confidence(0.13) benign(0.038) TCGA-BR-7715-01 13 21357924 21357924 C A XPO4 Missense_Mutation p.M1131I 0.07 tolerated(0.63) benign(0) TCGA-BR-7715-01 13 53624159 53624159 C T OLFM4 Silent p.L262L 0.13 TCGA-BR-7715-01 14 100165870 100165870 G C CYP46A1 Missense_Mutation p.G117A 0.08 deleterious(0) probably_damaging(0.938) TCGA-BR-7715-01 14 100743827 100743827 G A YY1 Missense_Mutation p.G379R 0.14 deleterious(0.02) probably_damaging(1) TCGA-BR-7715-01 15 22369460 22369460 A G OR4M2 Silent p.E295E 0.24 TCGA-BR-7715-01 15 23931667 23931667 T G NDN Missense_Mutation p.K233T 0.16 deleterious(0) possibly_damaging(0.8) TCGA-BR-7715-01 15 45386811 45386811 G A DUOX2 Missense_Mutation p.R1492C 0.10 deleterious(0) probably_damaging(1) TCGA-BR-7715-01 15 49924413 49924413 G T DTWD1 Missense_Mutation p.A108S 0.15 tolerated(0.07) probably_damaging(1) TCGA-BR-7715-01 15 74709712 74709712 C T SEMA7A Missense_Mutation p.E209K 0.20 tolerated(0.56) benign(0.008) TCGA-BR-7715-01 16 16225674 16225674 C T ABCC1 Missense_Mutation p.P1283L 0.28 tolerated(0.17) benign(0.008) TCGA-BR-7715-01 16 1841399 1841399 A G IGFALS Silent p.L378L 0.54 TCGA-BR-7715-01 16 28330503 28330503 C T SBK1 Silent p.D138D 0.23 TCGA-BR-7715-01 16 3025809 3025809 C T PKMYT1 Missense_Mutation p.R128H 0.14 deleterious(0.01) benign(0.377) TCGA-BR-7715-01 16 30976945 30976945 C T SETD1A Silent p.D581D 0.28 TCGA-BR-7715-01 16 68961816 68961816 A G TANGO6 Missense_Mutation p.T825A 0.26 tolerated(0.79) benign(0.001) TCGA-BR-7715-01 17 16722630 16722630 G A AC022596.6 RNA 0.43 TCGA-BR-7715-01 17 18065937 18065937 T G MYO15A Missense_Mutation p.L3186V 0.63 unknown(0) TCGA-BR-7715-01 17 18967279 18967279 A C SNORD3B-2 RNA 0.13 TCGA-BR-7715-01 17 26495496 26495496 G A NLK Missense_Mutation p.R287K 0.21 deleterious(0) probably_damaging(0.944) TCGA-BR-7715-01 17 26888484 26888484 T G PIGS Missense_Mutation p.D211A 0.35 tolerated(0.19) benign(0.012) TCGA-BR-7715-01 17 27064414 27064414 A G NEK8 Missense_Mutation p.S237G 0.37 tolerated(0.19) benign(0.029) TCGA-BR-7715-01 17 37826527 37826527 G A PNMT Missense_Mutation p.R245H 0.16 tolerated(0.13) benign(0.001) TCGA-BR-7715-01 17 39661551 39661551 A G KRT13 Silent p.G84G 0.25 TCGA-BR-7715-01 17 40113416 40113416 A G TTC25 RNA 0.17 TCGA-BR-7715-01 17 41886367 41886367 G A MPP3 Missense_Mutation p.T513M 0.31 tolerated(0.09) benign(0.022) TCGA-BR-7715-01 17 61972707 61972707 T G CSH1 Intron 0.11 TCGA-BR-7715-01 17 7577129 7577129 A G TP53 Missense_Mutation p.F270S 0.75 deleterious(0) probably_damaging(0.999) TCGA-BR-7715-01 17 77708918 77708918 A G ENPP7 Missense_Mutation p.K159R 0.05 tolerated(0.32) benign(0.029) TCGA-BR-7715-01 18 3534395 3534395 G A DLGAP1 Missense_Mutation p.T759M 0.17 tolerated(0.16) benign(0.034) TCGA-BR-7715-01 18 51013269 51013269 G A DCC Missense_Mutation p.R1280Q 0.36 tolerated(0.11) possibly_damaging(0.853) TCGA-BR-7715-01 19 10132337 10132337 G A RDH8 Missense_Mutation p.R303H 0.33 tolerated(0.31) benign(0.005) TCGA-BR-7715-01 19 17014389 17014389 G A CPAMD8 Silent p.D1531D 0.12 TCGA-BR-7715-01 19 38851464 38851464 T C CATSPERG Missense_Mutation p.Y621H 0.17 tolerated(0.11) possibly_damaging(0.607) TCGA-BR-7715-01 19 42397364 42397364 G A ARHGEF1 Missense_Mutation p.E227K 0.15 deleterious(0.02) benign(0.429) TCGA-BR-7715-01 19 50958492 50958492 C T MYBPC2 Silent p.F714F 0.66 TCGA-BR-7715-01 19 52216712 52216712 G A HAS1 Missense_Mutation p.R569W 0.71 deleterious(0) unknown(0) TCGA-BR-7715-01 19 56490859 56490859 G A NLRP8 Silent p.A992A 0.30 TCGA-BR-7715-01 19 6735918 6735918 C A GPR108 Splice_Site p.X97_splice 0.11 TCGA-BR-7715-01 1 107599821 107599821 C A PRMT6 Missense_Mutation p.L162M 0.08 tolerated(0.09) probably_damaging(0.976) TCGA-BR-7715-01 1 11985596 11985596 G T KIAA2013 Silent p.T233T 0.21 TCGA-BR-7715-01 1 149885086 149885086 G A SV2A Missense_Mutation p.R103W 0.31 deleterious(0.01) possibly_damaging(0.776) TCGA-BR-7715-01 1 150479607 150479607 A G TARS2 3'UTR 0.63 TCGA-BR-7715-01 1 152193722 152193722 C T HRNR Missense_Mutation p.S128N 0.22 possibly_damaging(0.816) TCGA-BR-7715-01 1 156236063 156236063 C T SMG5 Missense_Mutation p.R455H 0.28 tolerated(0.22) probably_damaging(0.967) TCGA-BR-7715-01 1 159283850 159283850 G T OR10J3 Missense_Mutation p.N200K 0.11 tolerated(0.05) possibly_damaging(0.836) TCGA-BR-7715-01 1 167088640 167088640 G T DUSP27 Missense_Mutation p.D198Y 0.25 deleterious(0) probably_damaging(0.992) TCGA-BR-7715-01 1 170007467 170007467 G A KIFAP3 Nonsense_Mutation p.R161* 0.19 TCGA-BR-7715-01 1 173550993 173550993 G C SLC9C2 Missense_Mutation p.F265L 0.14 deleterious(0) possibly_damaging(0.872) TCGA-BR-7715-01 1 190067604 190067604 C T BRINP3 Silent p.G615G 0.19 TCGA-BR-7715-01 1 201197594 201197594 G T IGFN1 3'UTR 0.17 TCGA-BR-7715-01 1 203148899 203148899 A G CHI3L1 Missense_Mutation p.V334A 0.09 deleterious(0.02) probably_damaging(0.946) TCGA-BR-7715-01 1 204219673 204219673 C - PLEKHA6 Splice_Site p.X531_splice 0.33 TCGA-BR-7715-01 1 204955199 204955199 T C NFASC Intron 0.18 TCGA-BR-7715-01 1 223164006 223164006 G A DISP1 Silent p.L193L 0.06 TCGA-BR-7715-01 1 223983962 223983962 T C TP53BP2 Missense_Mutation p.Y760C 0.36 deleterious(0) probably_damaging(0.999) TCGA-BR-7715-01 1 236911005 236911005 G A ACTN2 Missense_Mutation p.R482Q 0.25 deleterious(0.02) benign(0.052) TCGA-BR-7715-01 1 248487101 248487101 A G OR2M7 Missense_Mutation p.F257S 0.46 deleterious(0.02) probably_damaging(0.999) TCGA-BR-7715-01 1 3677842 3677842 C A CCDC27 Intron 0.10 TCGA-BR-7715-01 1 36785584 36785585 TG - SH3D21 Frame_Shift_Del p.V441Gfs*25 0.18 TCGA-BR-7715-01 1 36898072 36898072 G A OSCP1 Missense_Mutation p.S129F 0.46 deleterious(0) possibly_damaging(0.622) TCGA-BR-7715-01 1 53535676 53535676 C T PODN Missense_Mutation p.P98L 0.12 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-BR-7715-01 1 67195054 67195054 A C SGIP1 Missense_Mutation p.N617T 0.58 deleterious(0) possibly_damaging(0.687) TCGA-BR-7715-01 1 82408687 82408687 G A LPHN2 Silent p.V144V 0.07 TCGA-BR-7715-01 1 84373332 84373332 C T TTLL7 Missense_Mutation p.R600H 0.46 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-BR-7715-01 1 980791 980791 C T AGRN Silent p.A808A 0.28 TCGA-BR-7715-01 20 13140725 13140725 A C SPTLC3 Missense_Mutation p.E497D 0.36 deleterious(0.03) benign(0.132) TCGA-BR-7715-01 20 21227216 21227216 G A PLK1S1 RNA 0.08 TCGA-BR-7715-01 20 2779456 2779456 G A CPXM1 Missense_Mutation p.R86C 0.08 deleterious_low_confidence(0) benign(0.306) TCGA-BR-7715-01 20 30785006 30785006 A C PLAGL2 Missense_Mutation p.L247R 0.31 deleterious(0) probably_damaging(0.986) TCGA-BR-7715-01 20 42355141 42355141 T - GTSF1L Frame_Shift_Del p.N65Tfs*14 0.18 TCGA-BR-7715-01 20 47682762 47682762 G A CSE1L Missense_Mutation p.D88N 0.05 deleterious(0) probably_damaging(1) TCGA-BR-7715-01 21 47695170 47695170 T G MCM3AP Missense_Mutation p.E643A 0.14 deleterious(0) probably_damaging(0.993) TCGA-BR-7715-01 22 20760724 20760724 C T ZNF74 Silent p.S467S 0.09 TCGA-BR-7715-01 22 20780319 20780319 C T SCARF2 Silent p.S653S 0.17 TCGA-BR-7715-01 22 31486955 31486955 C A SMTN Missense_Mutation p.P316T 0.54 tolerated(0.26) benign(0.001) TCGA-BR-7715-01 2 102626041 102626041 C T IL1R2 Missense_Mutation p.R29W 0.36 deleterious(0.05) benign(0.001) TCGA-BR-7715-01 2 1094065 1094065 C T SNTG2 Silent p.V98V 0.13 TCGA-BR-7715-01 2 11755365 11755365 G T GREB1 Missense_Mutation p.A1091S 0.40 tolerated(0.44) benign(0.189) TCGA-BR-7715-01 2 145162441 145162441 C T ZEB2 Missense_Mutation p.R185H 0.37 deleterious(0) possibly_damaging(0.862) TCGA-BR-7715-01 2 15769793 15769793 G T DDX1 Missense_Mutation p.G648V 0.08 deleterious(0) probably_damaging(0.983) TCGA-BR-7715-01 2 166854619 166854619 A G SCN1A Missense_Mutation p.F1469L 0.37 deleterious(0.03) probably_damaging(0.949) TCGA-BR-7715-01 2 169761040 169761040 C T G6PC2 Silent p.G118G 0.16 TCGA-BR-7715-01 2 179469967 179469967 C A TTN Missense_Mutation p.K17979N 0.26 TCGA-BR-7715-01 2 196852950 196852950 T G DNAH7 Missense_Mutation p.S453R 0.55 tolerated(0.56) benign(0.009) TCGA-BR-7715-01 2 201337696 201337696 A C SPATS2L Missense_Mutation p.K401T 0.25 tolerated(0.05) possibly_damaging(0.464) TCGA-BR-7715-01 2 207431960 207431960 C T ADAM23 Nonsense_Mutation p.R470* 0.41 TCGA-BR-7715-01 2 214215281 214215281 C A SPAG16 Missense_Mutation p.P225Q 0.09 deleterious(0) probably_damaging(0.954) TCGA-BR-7715-01 2 234184526 234184531 TGTGTT - ATG16L1 Intron 0.08 TCGA-BR-7715-01 2 238303419 238303419 C T COL6A3 Missense_Mutation p.A174T 0.07 possibly_damaging(0.789) TCGA-BR-7715-01 2 48035360 48035360 G A FBXO11 Missense_Mutation p.T894I 0.33 deleterious(0.01) probably_damaging(0.975) TCGA-BR-7715-01 2 69002297 69002297 C T ARHGAP25 Intron 0.06 TCGA-BR-7715-01 3 10430051 10430051 C T ATP2B2 Missense_Mutation p.V273M 0.36 deleterious(0.02) probably_damaging(0.999) TCGA-BR-7715-01 3 115805190 115805190 T C LSAMP Silent p.Q123Q 0.24 TCGA-BR-7715-01 3 135870710 135870710 A G MSL2 Missense_Mutation p.L338S 0.45 tolerated(0.3) benign(0.023) TCGA-BR-7715-01 3 168845679 168845679 C T MECOM Silent p.T137T 0.36 TCGA-BR-7715-01 3 184052722 184052722 G A EIF4G1 3'UTR 0.25 TCGA-BR-7715-01 3 36874650 36874650 A C TRANK1 Missense_Mutation p.F2098V 0.50 tolerated(0.53) benign(0.001) TCGA-BR-7715-01 4 104065732 104065732 G A CENPE Missense_Mutation p.T1634I 0.27 benign(0.112) TCGA-BR-7715-01 4 106614632 106614632 G A INTS12 Silent p.D107D 0.06 TCGA-BR-7715-01 4 110681428 110681428 G A CFI Missense_Mutation p.A294V 0.31 tolerated(0.24) benign(0.012) TCGA-BR-7715-01 4 111539783 111539783 A T PITX2 Missense_Mutation p.L158Q 0.17 deleterious(0.02) benign(0.211) TCGA-BR-7715-01 4 138451501 138451501 A C PCDH18 Missense_Mutation p.L581W 0.25 deleterious(0) probably_damaging(0.978) TCGA-BR-7715-01 4 162459350 162459350 G A FSTL5 Missense_Mutation p.S427F 0.65 deleterious(0) probably_damaging(0.996) TCGA-BR-7715-01 4 185340650 185340650 G C IRF2 Missense_Mutation p.L54V 0.29 deleterious(0) possibly_damaging(0.518) TCGA-BR-7715-01 4 40440609 40440609 C T RBM47 Missense_Mutation p.R101H 0.22 deleterious(0.01) probably_damaging(0.987) TCGA-BR-7715-01 4 47514786 47514786 C T ATP10D Nonsense_Mutation p.R77* 0.13 TCGA-BR-7715-01 4 47877167 47877167 G C NFXL1 Missense_Mutation p.I741M 0.27 deleterious(0.03) benign(0.023) TCGA-BR-7715-01 4 47938591 47938591 C A CNGA1 Missense_Mutation p.R709S 0.29 deleterious(0.02) possibly_damaging(0.543) TCGA-BR-7715-01 4 5827283 5827283 G A CRMP1 Missense_Mutation p.S636L 0.29 deleterious(0.05) probably_damaging(0.997) TCGA-BR-7715-01 4 6055827 6055827 C A JAKMIP1 Missense_Mutation p.D586Y 0.11 deleterious(0) probably_damaging(0.991) TCGA-BR-7715-01 4 71200978 71200978 A C CABS1 Missense_Mutation p.K74N 0.49 deleterious(0.02) benign(0.052) TCGA-BR-7715-01 5 10450088 10450088 T C ROPN1L Silent p.L94L 0.08 TCGA-BR-7715-01 5 140752135 140752135 G A PCDHGB3 Missense_Mutation p.G725D 0.69 tolerated(0.07) benign(0.033) TCGA-BR-7715-01 5 148891431 148891431 G A CSNK1A1 Nonsense_Mutation p.R229* 0.73 TCGA-BR-7715-01 5 2749523 2749523 C T IRX2 Missense_Mutation p.G210S 0.09 tolerated(0.62) benign(0.002) TCGA-BR-7715-01 5 32000337 32000337 G A PDZD2 Missense_Mutation p.R405H 0.24 deleterious(0.02) benign(0.089) TCGA-BR-7715-01 5 5457596 5457596 T G KIAA0947 Missense_Mutation p.N281K 0.26 tolerated(0.65) benign(0.079) TCGA-BR-7715-01 6 117239221 117239221 C A RFX6 Missense_Mutation p.P332T 0.06 deleterious(0.02) probably_damaging(1) TCGA-BR-7715-01 6 127836053 127836053 C T SOGA3 Missense_Mutation p.R414H 0.34 deleterious(0) probably_damaging(0.985) TCGA-BR-7715-01 6 152671444 152671444 T G SYNE1 Missense_Mutation p.K3920N 0.28 benign(0.28) TCGA-BR-7715-01 6 165989936 165989936 T C PDE10A Intron 0.05 TCGA-BR-7715-01 7 103033484 103033484 C T SLC26A5 Missense_Mutation p.S334N 0.05 tolerated(0.05) probably_damaging(0.996) TCGA-BR-7715-01 7 103131143 103131143 T C RELN Missense_Mutation p.I3193V 0.30 tolerated(0.56) benign(0.005) TCGA-BR-7715-01 7 138944087 138944087 G C UBN2 Missense_Mutation p.K292N 0.04 deleterious(0.02) benign(0.004) TCGA-BR-7715-01 7 142723590 142723590 C T OR9A2 Silent p.T210T 0.31 TCGA-BR-7715-01 7 27169073 27169073 C T HOXA4 Missense_Mutation p.R245H 0.16 deleterious(0) probably_damaging(1) TCGA-BR-7715-01 7 27196209 27196209 T G HOXA7 5'UTR 0.37 TCGA-BR-7715-01 7 31011683 31011683 C T GHRHR Silent p.D190D 0.06 TCGA-BR-7715-01 7 4116774 4116774 G T SDK1 Missense_Mutation p.G1052V 0.10 deleterious(0) probably_damaging(0.999) TCGA-BR-7715-01 7 42006103 42006103 C T GLI3 Silent p.S856S 0.23 TCGA-BR-7715-01 7 55232990 55232990 C A EGFR Silent p.I580I 0.16 TCGA-BR-7715-01 7 75068500 75068500 C A POM121C Missense_Mutation p.R77L 0.24 deleterious(0.02) possibly_damaging(0.691) TCGA-BR-7715-01 8 104922687 104922687 A G RIMS2 Intron 0.26 TCGA-BR-7715-01 8 125499257 125499257 A T RNF139 Missense_Mutation p.K456M 0.02 deleterious(0) probably_damaging(0.992) TCGA-BR-7715-01 8 86352125 86352125 T G CA3 Silent p.T73T 0.63 TCGA-BR-7715-01 8 90937164 90937164 G A OSGIN2 Missense_Mutation p.G352S 0.14 deleterious(0) probably_damaging(1) TCGA-BR-7715-01 9 113192672 113192672 A C SVEP1 Missense_Mutation p.I1804M 0.24 benign(0.027) TCGA-BR-7715-01 9 117143453 117143453 T C AKNA Missense_Mutation p.E54G 0.24 tolerated(0.06) probably_damaging(0.999) TCGA-BR-7715-01 9 125423911 125423911 A G OR1L1 5'Flank 0.18 TCGA-BR-7715-01 9 135374980 135374980 C T C9orf171 Missense_Mutation p.R209W 0.55 deleterious(0.01) possibly_damaging(0.711) TCGA-BR-7715-01 X 107084451 107084451 C T MID2 Missense_Mutation p.P186S 0.32 tolerated(0.06) possibly_damaging(0.652) TCGA-BR-7715-01 X 125685821 125685821 G A DCAF12L1 Silent p.I257I 0.43 TCGA-BR-7715-01 X 132160682 132160682 G A USP26 Missense_Mutation p.R523C 0.82 tolerated(0.05) possibly_damaging(0.908) TCGA-BR-7715-01 X 142718111 142718111 C T SLITRK4 Missense_Mutation p.V272M 0.41 tolerated(1) possibly_damaging(0.721) TCGA-BR-7715-01 X 152821535 152821535 G A ATP2B3 Missense_Mutation p.R696H 0.46 deleterious(0.03) possibly_damaging(0.87) TCGA-BR-7715-01 X 70341241 70341241 C T MED12 Missense_Mutation p.P267L 0.10 benign(0.027) TCGA-BR-7715-01 X 8761697 8761697 A G FAM9A Splice_Site p.X310_splice 0.83 TCGA-BR-7716-01 10 101657908 101657908 T A DNMBP Missense_Mutation p.N952I 0.22 tolerated(0.06) benign(0.003) TCGA-BR-7716-01 10 104157099 104157099 A G NFKB2 Missense_Mutation p.M146V 0.42 tolerated(1) benign(0.086) TCGA-BR-7716-01 10 116064682 116064682 C T AFAP1L2 Silent p.L360L 0.18 TCGA-BR-7716-01 10 126448979 126448979 C A METTL10 3'UTR 0.22 TCGA-BR-7716-01 10 13361306 13361306 C G SEPHS1 Missense_Mutation p.E339Q 0.11 deleterious(0.01) probably_damaging(0.919) TCGA-BR-7716-01 10 22607894 22607894 G A COMMD3 Missense_Mutation p.D159N 0.07 tolerated(0.57) probably_damaging(0.994) TCGA-BR-7716-01 10 89120863 89120863 G A NUTM2D Nonsense_Mutation p.W264* 0.17 TCGA-BR-7716-01 11 102573751 102573751 G A MMP27 Missense_Mutation p.T147I 0.11 tolerated(0.09) possibly_damaging(0.847) TCGA-BR-7716-01 11 124294641 124294641 A C OR8B4 Missense_Mutation p.L43V 0.08 deleterious_low_confidence(0.04) benign(0.089) TCGA-BR-7716-01 11 128839750 128839750 T C ARHGAP32 Silent p.Q1772Q 0.09 TCGA-BR-7716-01 11 132307151 132307151 G A OPCML Missense_Mutation p.A210V 0.14 tolerated(0.64) benign(0.036) TCGA-BR-7716-01 11 46886049 46886049 G A LRP4 Silent p.L1731L 0.13 TCGA-BR-7716-01 11 47594886 47594886 C A KBTBD4 Missense_Mutation p.G401W 0.23 deleterious(0) probably_damaging(0.999) TCGA-BR-7716-01 11 55371302 55371302 A C OR4C11 Missense_Mutation p.L183W 0.07 deleterious(0) probably_damaging(0.995) TCGA-BR-7716-01 11 55419079 55419079 G T OR4S2 Missense_Mutation p.A234S 0.09 deleterious(0) possibly_damaging(0.906) TCGA-BR-7716-01 11 61058812 61058812 G A VWCE Silent p.F73F 0.21 TCGA-BR-7716-01 11 66249784 66249784 C T DPP3 Missense_Mutation p.S38F 0.15 deleterious(0) probably_damaging(0.997) TCGA-BR-7716-01 11 73021058 73021058 C T ARHGEF17 Missense_Mutation p.R459W 0.26 deleterious_low_confidence(0) probably_damaging(0.928) TCGA-BR-7716-01 11 92539570 92539570 A G FAT3 Missense_Mutation p.K3046E 0.35 benign(0.257) TCGA-BR-7716-01 11 94231264 94231264 G A ANKRD49 Missense_Mutation p.E96K 0.17 tolerated(0.46) benign(0.069) TCGA-BR-7716-01 12 112478294 112478294 G T NAA25 Missense_Mutation p.F843L 0.14 tolerated(0.49) benign(0.046) TCGA-BR-7716-01 12 112481431 112481431 G A NAA25 Nonsense_Mutation p.Q750* 0.05 TCGA-BR-7716-01 12 122958310 122958310 C T ZCCHC8 Missense_Mutation p.E620K 0.08 tolerated(0.24) benign(0.001) TCGA-BR-7716-01 12 21242987 21242987 T G SLCO1B7 Missense_Mutation p.L624V 0.29 tolerated(0.25) benign(0.111) TCGA-BR-7716-01 12 53002163 53002163 G A KRT73 Silent p.Y480Y 0.54 TCGA-BR-7716-01 12 56554459 56554459 G A MYL6 Intron 0.36 TCGA-BR-7716-01 12 6120874 6120874 G T VWF Silent p.V1917V 0.09 TCGA-BR-7716-01 12 64458981 64458981 C G SRGAP1 Silent p.L369L 0.21 TCGA-BR-7716-01 12 6690489 6690489 C A CHD4 Missense_Mutation p.V1583F 0.09 tolerated(0.05) benign(0.008) TCGA-BR-7716-01 12 7531888 7531888 G A CD163L1 Missense_Mutation p.S686L 0.08 deleterious(0.03) probably_damaging(0.941) TCGA-BR-7716-01 12 7647956 7647956 G A CD163 Missense_Mutation p.R381C 0.18 deleterious(0) probably_damaging(0.982) TCGA-BR-7716-01 12 81762535 81762535 A G PPFIA2 Missense_Mutation p.L484S 0.05 deleterious(0.01) possibly_damaging(0.615) TCGA-BR-7716-01 13 43987028 43987028 T C ENOX1 Missense_Mutation p.E8G 0.13 deleterious_low_confidence(0.02) benign(0.403) TCGA-BR-7716-01 13 77725076 77725076 C A MYCBP2 Silent p.V2270V 0.10 TCGA-BR-7716-01 13 92560227 92560227 C A GPC5 Silent p.A439A 0.14 TCGA-BR-7716-01 14 102552368 102552368 C A HSP90AA1 Missense_Mutation p.D208Y 0.07 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-BR-7716-01 14 105411904 105411904 G C AHNAK2 Missense_Mutation p.S3295C 0.11 possibly_damaging(0.85) TCGA-BR-7716-01 14 67431953 67431953 G C GPHN Missense_Mutation p.D292H 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-BR-7716-01 14 68118125 68118125 A G VTI1B Missense_Mutation p.Y226H 0.11 deleterious(0) possibly_damaging(0.702) TCGA-BR-7716-01 14 70990515 70990515 A G ADAM20 Silent p.P370P 0.14 TCGA-BR-7716-01 14 78043230 78043230 T C SPTLC2 Missense_Mutation p.I171V 0.30 tolerated(0.07) benign(0.381) TCGA-BR-7716-01 14 90736591 90736591 G C PSMC1 Missense_Mutation p.K361N 0.14 deleterious(0.01) benign(0.078) TCGA-BR-7716-01 15 42823658 42823658 G A SNAP23 Silent p.K206K 0.12 TCGA-BR-7716-01 15 62939637 62939637 C T TLN2 Missense_Mutation p.T43I 0.08 tolerated(0.3) benign(0.001) TCGA-BR-7716-01 16 29871964 29871964 C G CDIPT Missense_Mutation p.E118Q 0.09 tolerated(0.27) benign(0.004) TCGA-BR-7716-01 16 3293246 3293246 A G MEFV Silent p.S747S 0.14 TCGA-BR-7716-01 16 3367641 3367641 G A ZNF75A Nonsense_Mutation p.W221* 0.15 TCGA-BR-7716-01 16 53534222 53534222 G T AKTIP 5'UTR 0.15 TCGA-BR-7716-01 16 67762443 67762443 G T RANBP10 Intron 0.14 TCGA-BR-7716-01 16 70578362 70578362 G A SF3B3 Missense_Mutation p.D419N 0.09 deleterious(0.04) probably_damaging(0.974) TCGA-BR-7716-01 16 72158686 72158686 G T PMFBP1 Missense_Mutation p.L857I 0.13 deleterious(0.02) possibly_damaging(0.814) TCGA-BR-7716-01 16 8941596 8941596 G C PMM2 Missense_Mutation p.E219Q 0.22 deleterious(0) possibly_damaging(0.497) TCGA-BR-7716-01 16 89779059 89779059 C T VPS9D1 Missense_Mutation p.R166Q 0.07 deleterious(0) probably_damaging(0.994) TCGA-BR-7716-01 16 8987952 8987952 G A USP7 Missense_Mutation p.S1071F 0.14 tolerated(0.7) benign(0) TCGA-BR-7716-01 16 9009127 9009127 G C USP7 Missense_Mutation p.I354M 0.18 deleterious(0) probably_damaging(0.985) TCGA-BR-7716-01 16 9017104 9017104 G T USP7 Missense_Mutation p.F117L 0.17 deleterious(0.01) possibly_damaging(0.83) TCGA-BR-7716-01 17 17696366 17696366 A T RAI1 Missense_Mutation p.Q35L 0.13 deleterious(0.01) probably_damaging(0.997) TCGA-BR-7716-01 17 4058071 4058071 G A CYB5D2 Silent p.Q165Q 0.40 TCGA-BR-7716-01 17 48676957 48676957 G A CACNA1G Missense_Mutation p.E1143K 0.18 tolerated(0.09) benign(0.017) TCGA-BR-7716-01 17 4875791 4875791 G T CAMTA2 Silent p.G871G 0.35 TCGA-BR-7716-01 17 59760597 59760597 C T BRIP1 3'UTR 0.26 TCGA-BR-7716-01 17 65147323 65147323 C T HELZ Missense_Mutation p.R732H 0.26 deleterious(0.01) probably_damaging(1) TCGA-BR-7716-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.39 tolerated(0.13) possibly_damaging(0.631) TCGA-BR-7716-01 18 22806993 22806993 T A ZNF521 Missense_Mutation p.M297L 0.09 tolerated(1) benign(0.002) TCGA-BR-7716-01 18 31537439 31537439 C T NOL4 Missense_Mutation p.V427I 0.14 tolerated(0.1) possibly_damaging(0.835) TCGA-BR-7716-01 18 580813 580813 G A CETN1 Silent p.E135E 0.15 TCGA-BR-7716-01 18 8394510 8394510 C T PTPRM Silent p.I1415I 0.17 TCGA-BR-7716-01 19 10270586 10270586 T C DNMT1 Missense_Mutation p.K368E 0.34 deleterious(0.01) benign(0.272) TCGA-BR-7716-01 19 22847879 22847879 A T ZNF492 Missense_Mutation p.I470F 0.17 deleterious(0.01) probably_damaging(0.954) TCGA-BR-7716-01 19 35251301 35251301 C G ZNF599 Missense_Mutation p.L135F 0.06 tolerated(0.12) benign(0.02) TCGA-BR-7716-01 19 35741220 35741220 C T LSR Missense_Mutation p.P86S 0.07 tolerated(0.35) probably_damaging(0.998) TCGA-BR-7716-01 19 36037609 36037609 G T TMEM147 Silent p.L81L 0.10 TCGA-BR-7716-01 19 42753761 42753761 G A ERF Missense_Mutation p.S168F 0.07 deleterious(0) benign(0.012) TCGA-BR-7716-01 19 44174251 44174251 G A PLAUR Missense_Mutation p.P8S 0.09 tolerated_low_confidence(0.39) probably_damaging(0.968) TCGA-BR-7716-01 19 44242339 44242339 G C SMG9 Missense_Mutation p.L282V 0.05 tolerated(0.05) benign(0.027) TCGA-BR-7716-01 19 44635941 44635941 C T ZNF225 Nonsense_Mutation p.R392* 0.09 TCGA-BR-7716-01 19 44933034 44933034 G C ZNF229 Nonsense_Mutation p.S641* 0.09 TCGA-BR-7716-01 19 48374741 48374741 G A SULT2A1 Missense_Mutation p.L277F 0.12 tolerated(0.45) benign(0.122) TCGA-BR-7716-01 19 52569233 52569233 G A ZNF841 Silent p.F634F 0.08 TCGA-BR-7716-01 19 53770092 53770092 C A VN1R4 Missense_Mutation p.C276F 0.09 tolerated(0.05) benign(0.085) TCGA-BR-7716-01 19 54403920 54403920 G A PRKCG Missense_Mutation p.D498N 0.09 deleterious(0) probably_damaging(1) TCGA-BR-7716-01 19 57666681 57666681 C T DUXA Silent p.A166A 0.09 TCGA-BR-7716-01 19 9061107 9061107 G T MUC16 Missense_Mutation p.T8780K 0.18 unknown(0) TCGA-BR-7716-01 1 109883434 109883434 T C SORT1 Silent p.R392R 0.11 TCGA-BR-7716-01 1 112524597 112524597 C T KCND3 Missense_Mutation p.R251H 0.12 deleterious(0) possibly_damaging(0.766) TCGA-BR-7716-01 1 144855852 144855852 C T PDE4DIP Missense_Mutation p.R2234Q 0.11 tolerated(0.29) possibly_damaging(0.801) TCGA-BR-7716-01 1 153004879 153004879 C T SPRR1B Nonsense_Mutation p.Q20* 0.14 TCGA-BR-7716-01 1 156617863 156617863 G T BCAN Missense_Mutation p.D244Y 0.10 deleterious(0) probably_damaging(0.998) TCGA-BR-7716-01 1 158596641 158596641 C A SPTA1 Nonsense_Mutation p.E1941* 0.07 TCGA-BR-7716-01 1 159828666 159828666 T C VSIG8 Missense_Mutation p.Q29R 0.11 tolerated(0.24) benign(0.101) TCGA-BR-7716-01 1 161165406 161165406 G A ADAMTS4 Silent p.L370L 0.11 TCGA-BR-7716-01 1 16269638 16269638 G A ZBTB17 Silent p.I583I 0.12 TCGA-BR-7716-01 1 180959171 180959171 C T STX6 Silent p.E146E 0.10 TCGA-BR-7716-01 1 202733219 202733219 G C KDM5B Missense_Mutation p.L256V 0.08 tolerated(0.12) benign(0.117) TCGA-BR-7716-01 1 215799151 215799151 C T USH2A Missense_Mutation p.R5194H 0.13 benign(0) TCGA-BR-7716-01 1 215821986 215821986 C T USH2A Silent p.L4822L 0.17 TCGA-BR-7716-01 1 22903373 22903373 G C EPHA8 Missense_Mutation p.A275P 0.17 tolerated(0.11) possibly_damaging(0.678) TCGA-BR-7716-01 1 248129528 248129528 C G OR2AK2 Missense_Mutation p.L299V 0.09 tolerated(0.22) benign(0.078) TCGA-BR-7716-01 1 39753193 39753193 C T MACF1 Nonsense_Mutation p.R587* 0.14 TCGA-BR-7716-01 1 40558102 40558102 A G PPT1 Silent p.L68L 0.13 TCGA-BR-7716-01 1 41485930 41485930 T G SLFNL1 Missense_Mutation p.S135R 0.08 tolerated(0.36) benign(0.004) TCGA-BR-7716-01 1 55566627 55566627 G A USP24 Missense_Mutation p.S1719L 0.08 deleterious(0.01) probably_damaging(0.967) TCGA-BR-7716-01 1 55599811 55599811 G A USP24 Silent p.L1105L 0.15 TCGA-BR-7716-01 1 55599812 55599812 A T USP24 Silent p.L1104L 0.15 TCGA-BR-7716-01 1 55603343 55603343 G T USP24 Missense_Mutation p.Q1016K 0.16 deleterious(0.04) benign(0.285) TCGA-BR-7716-01 1 91182644 91182644 C T BARHL2 Missense_Mutation p.E37K 0.14 deleterious_low_confidence(0.05) benign(0.34) TCGA-BR-7716-01 20 1918035 1918035 G A SIRPA Missense_Mutation p.E446K 0.07 deleterious(0) possibly_damaging(0.899) TCGA-BR-7716-01 20 20621418 20621418 G A RALGAPA2 Silent p.F159F 0.13 TCGA-BR-7716-01 20 30363673 30363673 G T TPX2 Missense_Mutation p.Q204H 0.09 deleterious(0.01) benign(0.429) TCGA-BR-7716-01 20 31627211 31627211 C T BPIFB6 Missense_Mutation p.P320L 0.09 tolerated(0.13) benign(0.19) TCGA-BR-7716-01 20 40122221 40122221 T G CHD6 Missense_Mutation p.K424T 0.16 deleterious(0.02) probably_damaging(0.922) TCGA-BR-7716-01 20 45242254 45242254 G T SLC13A3 Silent p.G74G 0.10 TCGA-BR-7716-01 20 51871441 51871441 G A TSHZ2 Missense_Mutation p.E482K 0.04 tolerated(0.2) benign(0.007) TCGA-BR-7716-01 20 5924624 5924624 A T TRMT6 Missense_Mutation p.M171K 0.26 deleterious(0.01) probably_damaging(0.969) TCGA-BR-7716-01 21 19642429 19642429 C A TMPRSS15 Nonsense_Mutation p.G973* 0.19 TCGA-BR-7716-01 21 22746243 22746243 G C NCAM2 Missense_Mutation p.D369H 0.16 tolerated(0.18) possibly_damaging(0.55) TCGA-BR-7716-01 22 38021940 38021940 C G GGA1 Missense_Mutation p.D359E 0.09 tolerated(0.9) benign(0.142) TCGA-BR-7716-01 22 40417545 40417545 C T FAM83F Missense_Mutation p.A344V 0.30 deleterious(0) probably_damaging(0.973) TCGA-BR-7716-01 22 50886972 50886972 A G SBF1 Silent p.R1717R 0.22 TCGA-BR-7716-01 2 100360598 100360598 G C AFF3 Missense_Mutation p.S361C 0.05 deleterious(0.02) benign(0.037) TCGA-BR-7716-01 2 103318933 103318933 C G SLC9A2 Nonsense_Mutation p.S606* 0.13 TCGA-BR-7716-01 2 166770142 166770142 C G TTC21B Missense_Mutation p.R718T 0.10 tolerated(0.23) benign(0.098) TCGA-BR-7716-01 2 179647145 179647145 C G TTN Missense_Mutation p.E1058D 0.10 TCGA-BR-7716-01 2 201768269 201768269 C T NIF3L1 Silent p.V334V 0.14 TCGA-BR-7716-01 2 201768371 201768371 G C NIF3L1 Missense_Mutation p.E368D 0.08 tolerated(0.08) benign(0.026) TCGA-BR-7716-01 2 201768375 201768375 G T NIF3L1 Missense_Mutation p.D370Y 0.08 deleterious(0) probably_damaging(1) TCGA-BR-7716-01 2 202340424 202340424 G A STRADB Silent p.V169V 0.14 TCGA-BR-7716-01 2 236839529 236839529 G C AGAP1 Missense_Mutation p.S482T 0.21 tolerated(0.15) benign(0.137) TCGA-BR-7716-01 2 27887235 27887235 G A SLC4A1AP Missense_Mutation p.V206M 0.17 deleterious(0) probably_damaging(0.985) TCGA-BR-7716-01 2 29379298 29379298 C T CLIP4 Missense_Mutation p.T415I 0.08 tolerated(0.21) benign(0.002) TCGA-BR-7716-01 2 53992553 53992553 G A ASB3 Missense_Mutation p.H88Y 0.15 tolerated(0.41) probably_damaging(0.992) TCGA-BR-7716-01 3 121251880 121251880 G A POLQ Missense_Mutation p.S306L 0.08 deleterious(0) probably_damaging(0.946) TCGA-BR-7716-01 3 131220467 131220467 T A MRPL3 Missense_Mutation p.K62M 0.15 deleterious(0) probably_damaging(0.971) TCGA-BR-7716-01 3 151056202 151056202 G C P2RY12 Silent p.L144L 0.05 TCGA-BR-7716-01 3 157188178 157188178 G C VEPH1 Missense_Mutation p.N93K 0.16 tolerated(0.05) possibly_damaging(0.493) TCGA-BR-7716-01 3 170201172 170201172 C A SLC7A14 Missense_Mutation p.S349I 0.09 deleterious(0) probably_damaging(0.945) TCGA-BR-7716-01 3 88040875 88040875 G T HTR1F Nonsense_Mutation p.E326* 0.12 TCGA-BR-7716-01 3 96706518 96706518 T A EPHA6 Silent p.T265T 0.11 TCGA-BR-7716-01 3 96706657 96706657 C T EPHA6 Missense_Mutation p.P312S 0.13 tolerated(0.08) probably_damaging(0.999) TCGA-BR-7716-01 3 98110025 98110025 T A OR5K3 Missense_Mutation p.H172Q 0.24 deleterious(0) possibly_damaging(0.77) TCGA-BR-7716-01 4 146071793 146071793 T - OTUD4 Frame_Shift_Del p.P313Lfs*10 0.32 TCGA-BR-7716-01 4 148575442 148575442 C A PRMT10 Missense_Mutation p.G536C 0.22 tolerated(0.26) benign(0.003) TCGA-BR-7716-01 4 56755095 56755095 G C EXOC1 Missense_Mutation p.E458Q 0.15 tolerated(0.31) benign(0.303) TCGA-BR-7716-01 4 95578606 95578606 G C PDLIM5 Missense_Mutation p.W527S 0.09 deleterious(0) probably_damaging(0.983) TCGA-BR-7716-01 5 112379318 112379318 C G MCC Missense_Mutation p.D889H 0.07 tolerated(0.15) probably_damaging(0.912) TCGA-BR-7716-01 5 141019969 141019969 T C FCHSD1 3'UTR 0.28 TCGA-BR-7716-01 5 150905343 150905343 G C FAT2 Missense_Mutation p.Q3498E 0.14 benign(0.012) TCGA-BR-7716-01 5 161569308 161569308 C A GABRG2 Missense_Mutation p.A343D 0.22 deleterious(0) probably_damaging(0.999) TCGA-BR-7716-01 5 179264517 179264517 C A C5orf45 Missense_Mutation p.K302N 0.24 tolerated(0.12) benign(0.346) TCGA-BR-7716-01 5 180377062 180377062 C T BTNL8 Missense_Mutation p.H341Y 0.46 deleterious(0) probably_damaging(0.929) TCGA-BR-7716-01 5 180664713 180664713 C G GNB2L1 Missense_Mutation p.E262Q 0.14 tolerated(0.06) probably_damaging(0.939) TCGA-BR-7716-01 5 182371 182371 C T PLEKHG4B Missense_Mutation p.T1250M 0.37 tolerated(0.14) benign(0.001) TCGA-BR-7716-01 5 43704518 43704518 C G NNT 3'UTR 0.06 TCGA-BR-7716-01 5 76621533 76621533 T G PDE8B Missense_Mutation p.F190C 0.19 deleterious(0.01) probably_damaging(0.981) TCGA-BR-7716-01 5 80419490 80419490 G A RASGRF2 Missense_Mutation p.A834T 0.11 tolerated_low_confidence(0.4) benign(0) TCGA-BR-7716-01 6 130761934 130761934 G A TMEM200A Missense_Mutation p.D123N 0.11 deleterious(0.01) possibly_damaging(0.836) TCGA-BR-7716-01 6 133833864 133833864 T G EYA4 Missense_Mutation p.C429W 0.15 deleterious(0) probably_damaging(0.984) TCGA-BR-7716-01 6 165712986 165712986 T C C6orf118 Silent p.E294E 0.16 TCGA-BR-7716-01 6 167585758 167585758 C T TCP10L2 Silent p.S42S 0.10 TCGA-BR-7716-01 6 26056673 26056673 T G HIST1H1C 5'UTR 0.35 TCGA-BR-7716-01 6 33131427 33131427 G C COL11A2 3'UTR 0.07 TCGA-BR-7716-01 6 46658843 46658843 C T TDRD6 Missense_Mutation p.T993M 0.18 deleterious(0) probably_damaging(1) TCGA-BR-7716-01 6 51907859 51907859 T A PKHD1 Silent p.T965T 0.12 TCGA-BR-7716-01 7 104742409 104742409 C G KMT2E Missense_Mutation p.S655C 0.11 deleterious(0) possibly_damaging(0.7) TCGA-BR-7716-01 7 117876182 117876182 G T ANKRD7 Missense_Mutation p.A186S 0.08 deleterious(0) probably_damaging(0.999) TCGA-BR-7716-01 7 129919480 129919480 A C CPA2 Missense_Mutation p.K322T 0.24 tolerated(0.23) benign(0.018) TCGA-BR-7716-01 7 154863188 154863188 G T HTR5A Missense_Mutation p.Q193H 0.19 tolerated(0.32) benign(0.111) TCGA-BR-7716-01 7 158824743 158824743 G T VIPR2 Silent p.S329S 0.11 TCGA-BR-7716-01 7 16841346 16841346 G A AGR2 Silent p.V25V 0.10 TCGA-BR-7716-01 7 20793071 20793071 A C ABCB5 Missense_Mutation p.K1173T 0.10 deleterious(0.02) possibly_damaging(0.856) TCGA-BR-7716-01 7 2317745 2317745 A C SNX8 Missense_Mutation p.V97G 0.13 deleterious(0) probably_damaging(0.994) TCGA-BR-7716-01 7 6629948 6629948 G A C7orf26 Missense_Mutation p.D12N 0.15 deleterious(0.02) probably_damaging(0.913) TCGA-BR-7716-01 7 92733964 92733964 G C SAMD9 Missense_Mutation p.L483V 0.09 deleterious(0) probably_damaging(0.948) TCGA-BR-7716-01 7 98256591 98256591 G T NPTX2 Missense_Mutation p.G335W 0.13 deleterious(0) probably_damaging(1) TCGA-BR-7716-01 8 106815454 106815454 G A ZFPM2 Silent p.L1048L 0.19 TCGA-BR-7716-01 8 116599425 116599425 C A TRPS1 Nonsense_Mutation p.E835* 0.44 TCGA-BR-7716-01 8 22051982 22051982 A G BMP1 Missense_Mutation p.K441R 0.06 tolerated(0.14) benign(0.063) TCGA-BR-7716-01 8 55371726 55371726 C T SOX17 Missense_Mutation p.P139L 0.24 deleterious(0) probably_damaging(0.988) TCGA-BR-7716-01 8 69012077 69012077 A C PREX2 Missense_Mutation p.K905T 0.11 deleterious(0.01) benign(0.149) TCGA-BR-7716-01 9 114135651 114135651 C A KIAA0368 Missense_Mutation p.D1583Y 0.14 deleterious(0) probably_damaging(0.999) TCGA-BR-7716-01 9 114464486 114464486 A G C9orf84 Silent p.Y932Y 0.14 TCGA-BR-7716-01 9 117266506 117266506 G A DFNB31 Silent p.N192N 0.21 TCGA-BR-7716-01 9 125377550 125377550 C G OR1Q1 Missense_Mutation p.F178L 0.11 deleterious(0.04) probably_damaging(0.992) TCGA-BR-7716-01 9 5922408 5922408 T A KIAA2026 Missense_Mutation p.L1196F 0.21 tolerated(0.08) benign(0.221) TCGA-BR-7716-01 9 77415356 77415356 G C TRPM6 Missense_Mutation p.F684L 0.12 deleterious(0) probably_damaging(0.999) TCGA-BR-7716-01 9 79933226 79933226 G T VPS13A Nonsense_Mutation p.E1678* 0.21 TCGA-BR-7716-01 X 130218985 130218985 T A ARHGAP36 Missense_Mutation p.M301K 0.19 deleterious(0) probably_damaging(0.995) TCGA-BR-7716-01 X 132351694 132351694 C T TFDP3 Silent p.Q198Q 0.11 TCGA-BR-7716-01 X 142795056 142795056 C T SPANXN2 3'UTR 0.33 TCGA-BR-7716-01 X 147024689 147024689 T C FMR1 Silent p.D438D 0.17 TCGA-BR-7716-01 X 150828296 150828296 C T PASD1 Missense_Mutation p.P277S 0.43 tolerated(0.5) benign(0.099) TCGA-BR-7716-01 X 153137610 153137610 C T L1CAM Missense_Mutation p.E133K 0.11 deleterious(0.02) probably_damaging(0.999) TCGA-BR-7716-01 X 17750507 17750507 C T NHS Nonsense_Mutation p.Q1606* 0.20 TCGA-BR-7716-01 X 75650042 75650042 A C MAGEE1 Missense_Mutation p.E573D 0.33 tolerated(0.14) benign(0.063) TCGA-BR-7716-01 X 78216055 78216055 T A P2RY10 Missense_Mutation p.M13K 0.22 deleterious(0) benign(0.379) TCGA-BR-7716-01 X 82764197 82764197 G A POU3F4 Missense_Mutation p.V289I 0.31 tolerated(0.12) probably_damaging(0.916) TCGA-BR-7717-01 10 101577118 101577118 G T ABCC2 Missense_Mutation p.K716N 0.46 deleterious(0) probably_damaging(0.948) TCGA-BR-7717-01 10 11894011 11894011 G A PROSER2 5'UTR 0.15 TCGA-BR-7717-01 10 124909459 124909459 G T HMX2 Silent p.A214A 0.25 TCGA-BR-7717-01 10 22616977 22616977 G A BMI1 Missense_Mutation p.D139N 0.29 tolerated(0.12) benign(0.017) TCGA-BR-7717-01 10 85974437 85974437 G A CDHR1 3'UTR 0.52 TCGA-BR-7717-01 11 108214049 108214049 G A ATM Missense_Mutation p.R2790K 0.21 deleterious(0.02) possibly_damaging(0.759) TCGA-BR-7717-01 11 121038845 121038845 G A TECTA Missense_Mutation p.R1890H 0.29 deleterious(0.01) possibly_damaging(0.841) TCGA-BR-7717-01 11 124180557 124180557 C A OR8D1 Missense_Mutation p.V36L 0.09 tolerated(0.22) benign(0.004) TCGA-BR-7717-01 11 125889542 125889542 G T CDON Silent p.I156I 0.12 TCGA-BR-7717-01 11 132184473 132184473 A G NTM Silent p.K270K 0.21 TCGA-BR-7717-01 11 60183029 60183029 T C MS4A14 Silent p.N229N 0.09 TCGA-BR-7717-01 11 64536711 64536711 G A SF1 Missense_Mutation p.R380W 0.47 deleterious(0) probably_damaging(0.999) TCGA-BR-7717-01 11 66055143 66055143 C A YIF1A Missense_Mutation p.W118L 0.11 deleterious(0) probably_damaging(0.982) TCGA-BR-7717-01 11 66240870 66240870 C T PELI3 Silent p.A205A 0.07 TCGA-BR-7717-01 11 7111074 7111074 C T RBMXL2 Silent p.R241R 0.08 TCGA-BR-7717-01 11 78467865 78467865 T G TENM4 Missense_Mutation p.N914T 0.16 tolerated(0.09) benign(0.032) TCGA-BR-7717-01 11 992584 992584 A G AP2A2 Missense_Mutation p.I451V 0.12 tolerated(0.34) benign(0.004) TCGA-BR-7717-01 12 26217559 26217559 C T RASSF8 Nonsense_Mutation p.R78* 0.30 TCGA-BR-7717-01 12 75436057 75436057 T C KCNC2 3'UTR 0.18 TCGA-BR-7717-01 12 81660768 81660768 T G PPFIA2 Missense_Mutation p.N1173T 0.15 deleterious(0.01) benign(0.268) TCGA-BR-7717-01 13 108518852 108518852 A T FAM155A Missense_Mutation p.D31E 0.05 tolerated(0.2) probably_damaging(0.99) TCGA-BR-7717-01 13 36049983 36049983 G A MAB21L1 Missense_Mutation p.A98V 0.17 deleterious(0.02) probably_damaging(1) TCGA-BR-7717-01 13 37014131 37014131 A G CCNA1 Missense_Mutation p.I303M 0.31 deleterious(0.02) probably_damaging(0.996) TCGA-BR-7717-01 13 39542650 39542650 C T STOML3 Missense_Mutation p.E180K 0.15 tolerated(0.1) benign(0.04) TCGA-BR-7717-01 13 77642839 77642839 G C MYCBP2 Missense_Mutation p.A3973G 0.17 probably_damaging(0.98) TCGA-BR-7717-01 13 88329875 88329875 C T SLITRK5 Silent p.P744P 0.25 TCGA-BR-7717-01 14 103928798 103928798 G A MARK3 Silent p.K180K 0.19 TCGA-BR-7717-01 14 105413100 105413100 C G AHNAK2 Silent p.L2896L 0.16 TCGA-BR-7717-01 14 105609473 105609473 G A JAG2 Silent p.S1092S 0.13 TCGA-BR-7717-01 14 106208484 106208484 G A IGHG1 Missense_Mutation p.T139I 0.10 deleterious(0) possibly_damaging(0.764) TCGA-BR-7717-01 14 19553567 19553567 G A POTEG Missense_Mutation p.D51N 0.03 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-BR-7717-01 14 23856775 23856775 T C MYH6 Missense_Mutation p.E1538G 0.18 deleterious(0) probably_damaging(0.967) TCGA-BR-7717-01 14 29237173 29237173 C G FOXG1 Missense_Mutation p.R230G 0.26 deleterious(0) probably_damaging(1) TCGA-BR-7717-01 14 75473366 75473366 C G EIF2B2 Missense_Mutation p.H260Q 0.24 deleterious(0) possibly_damaging(0.665) TCGA-BR-7717-01 15 23811829 23811829 G A MKRN3 Silent p.S300S 0.09 TCGA-BR-7717-01 15 32460293 32460293 C T CHRNA7 Silent p.N410N 0.16 TCGA-BR-7717-01 15 33261313 33261313 A C FMN1 Missense_Mutation p.N640K 0.20 tolerated(0.21) unknown(0) TCGA-BR-7717-01 15 43552469 43552469 T A TGM5 Missense_Mutation p.T73S 0.19 deleterious(0) probably_damaging(0.999) TCGA-BR-7717-01 15 45428734 45428734 G T DUOX1 Silent p.R311R 0.24 TCGA-BR-7717-01 15 45428735 45428735 C T DUOX1 Missense_Mutation p.P312S 0.23 tolerated(0.55) benign(0.007) TCGA-BR-7717-01 15 79748518 79748518 T A KIAA1024 Missense_Mutation p.F10Y 0.50 tolerated(0.08) benign(0.11) TCGA-BR-7717-01 15 86225415 86225415 C T AKAP13 Missense_Mutation p.H1714Y 0.18 tolerated(0.96) benign(0.291) TCGA-BR-7717-01 15 90281389 90281389 C T WDR93 Missense_Mutation p.P628L 0.15 deleterious(0) possibly_damaging(0.795) TCGA-BR-7717-01 16 11375074 11375074 G A PRM1 Missense_Mutation p.R8C 0.30 unknown(0) TCGA-BR-7717-01 16 21999999 21999999 G A PDZD9 Nonsense_Mutation p.R49* 0.26 TCGA-BR-7717-01 16 3406257 3406257 G C OR2C1 Missense_Mutation p.W106S 0.10 tolerated(0.53) probably_damaging(0.998) TCGA-BR-7717-01 16 3714317 3714317 C T TRAP1 Silent p.E509E 0.14 TCGA-BR-7717-01 16 64981997 64981997 C A CDH11 Missense_Mutation p.V634L 0.16 deleterious(0.02) probably_damaging(0.978) TCGA-BR-7717-01 16 67645936 67645936 C - CTCF Frame_Shift_Del p.H288Qfs*22 0.20 TCGA-BR-7717-01 16 68893968 68893968 G T TANGO6 Missense_Mutation p.W92C 0.31 deleterious(0) probably_damaging(1) TCGA-BR-7717-01 16 70351425 70351425 A G DDX19B Missense_Mutation p.Y108C 0.04 deleterious(0.01) benign(0.098) TCGA-BR-7717-01 16 76555129 76555129 T C CNTNAP4 Missense_Mutation p.F747L 0.26 tolerated(0.37) benign(0.076) TCGA-BR-7717-01 17 10233733 10233733 C G MYH13 Silent p.R802R 0.21 TCGA-BR-7717-01 17 10258081 10258081 G C MYH13 Silent p.T307T 0.04 TCGA-BR-7717-01 17 10404711 10404711 C T MYH1 Missense_Mutation p.E1152K 0.12 deleterious(0) probably_damaging(0.999) TCGA-BR-7717-01 17 21202209 21202209 T C MAP2K3 Missense_Mutation p.S46P 0.06 deleterious(0.02) possibly_damaging(0.737) TCGA-BR-7717-01 17 39388969 39388969 G C KRTAP9-3 Missense_Mutation p.Q72H 0.34 deleterious(0.03) unknown(0) TCGA-BR-7717-01 17 42929086 42929086 G A EFTUD2 Missense_Mutation p.R939C 0.69 deleterious(0) probably_damaging(1) TCGA-BR-7717-01 17 45773677 45773677 C T TBKBP1 Missense_Mutation p.R67C 0.54 deleterious(0) probably_damaging(0.925) TCGA-BR-7717-01 17 56651574 56651574 T C TEX14 Silent p.S1165S 0.30 TCGA-BR-7717-01 17 63534248 63534250 CAT AC AXIN2 Intron 0.38 TCGA-BR-7717-01 17 77082221 77082221 G A ENGASE Silent p.P674P 0.19 TCGA-BR-7717-01 17 8647423 8647423 G T CCDC42 Missense_Mutation p.H55N 0.25 deleterious(0.02) benign(0.304) TCGA-BR-7717-01 18 23866069 23866069 T G TAF4B Missense_Mutation p.L399R 0.10 tolerated(0.27) possibly_damaging(0.534) TCGA-BR-7717-01 18 260237 260237 C T THOC1 Silent p.Q108Q 0.24 TCGA-BR-7717-01 18 29038467 29038467 C A DSG3 Silent p.I92I 0.39 TCGA-BR-7717-01 18 72168606 72168606 C T CNDP2 Missense_Mutation p.P35S 0.14 tolerated(0.08) benign(0.064) TCGA-BR-7717-01 19 16872810 16872810 G A NWD1 Missense_Mutation p.R665H 0.34 deleterious(0.04) benign(0.031) TCGA-BR-7717-01 19 17088219 17088219 C T CPAMD8 Missense_Mutation p.D620N 0.59 deleterious(0) probably_damaging(1) TCGA-BR-7717-01 19 40419757 40419757 A C FCGBP Missense_Mutation p.H1079Q 0.12 probably_damaging(1) TCGA-BR-7717-01 19 40900837 40900837 G A PRX Missense_Mutation p.A1141V 0.16 deleterious(0.01) possibly_damaging(0.695) TCGA-BR-7717-01 19 48789445 48789445 G A ZNF114 Silent p.P188P 0.53 TCGA-BR-7717-01 19 50285901 50285901 C A AP2A1 Silent p.A131A 0.14 TCGA-BR-7717-01 19 57328018 57328018 G A PEG3 Missense_Mutation p.R598C 0.19 tolerated(0.19) possibly_damaging(0.68) TCGA-BR-7717-01 19 9058529 9058529 G A MUC16 Silent p.D9639D 0.21 TCGA-BR-7717-01 1 155449512 155449512 C T ASH1L Missense_Mutation p.R1050K 0.27 tolerated_low_confidence(0.35) probably_damaging(0.99) TCGA-BR-7717-01 1 183206593 183206595 AAG - LAMC2 In_Frame_Del p.E905del 0.28 TCGA-BR-7717-01 1 186083167 186083167 A C HMCN1 Missense_Mutation p.T3730P 0.23 benign(0.44) TCGA-BR-7717-01 1 197391073 197391073 C T CRB1 Silent p.P705P 0.08 TCGA-BR-7717-01 1 220870050 220870050 A T C1orf115 Missense_Mutation p.S136C 0.08 deleterious(0) possibly_damaging(0.843) TCGA-BR-7717-01 1 235993555 235993555 G C LYST Missense_Mutation p.L55V 0.15 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-BR-7717-01 1 3680286 3680288 ACA - CCDC27 In_Frame_Del p.Q449del 0.48 TCGA-BR-7717-01 1 68949689 68949689 T A DEPDC1 Missense_Mutation p.D285V 0.53 deleterious(0.01) benign(0.323) TCGA-BR-7717-01 1 82416098 82416098 A T LPHN2 Missense_Mutation p.K475M 0.50 tolerated(0.08) possibly_damaging(0.509) TCGA-BR-7717-01 1 9171478 9171478 C T GPR157 Missense_Mutation p.V152M 0.60 deleterious(0) probably_damaging(0.998) TCGA-BR-7717-01 20 3210393 3210393 A C SLC4A11 Missense_Mutation p.L550V 0.05 tolerated(0.51) benign(0.013) TCGA-BR-7717-01 20 32677677 32677677 C T EIF2S2 Silent p.P287P 0.21 TCGA-BR-7717-01 20 33068998 33068998 G A ITCH Missense_Mutation p.E735K 0.15 tolerated(0.12) possibly_damaging(0.665) TCGA-BR-7717-01 20 35350177 35350177 A G NDRG3 5'UTR 0.21 TCGA-BR-7717-01 20 40179977 40179977 C G CHD6 5'UTR 0.38 TCGA-BR-7717-01 20 55059238 55059238 G A RTFDC1 Missense_Mutation p.C157Y 0.31 deleterious(0) probably_damaging(0.996) TCGA-BR-7717-01 20 55746147 55746147 C T BMP7 Silent p.P388P 0.15 TCGA-BR-7717-01 21 10971337 10971337 G A TPTE Missense_Mutation p.P7L 0.10 deleterious_low_confidence(0.01) benign(0.013) TCGA-BR-7717-01 21 44179168 44179168 C G PDE9A Missense_Mutation p.I290M 0.31 tolerated(0.26) benign(0.03) TCGA-BR-7717-01 22 23632583 23632583 G A BCR Missense_Mutation p.G922E 0.03 deleterious(0.01) probably_damaging(0.993) TCGA-BR-7717-01 22 35481614 35481614 T G ISX Silent p.T222T 0.26 TCGA-BR-7717-01 22 42383244 42383244 C T SEPT3 Silent p.T122T 0.26 TCGA-BR-7717-01 22 43610151 43610151 G A SCUBE1 Silent p.C666C 0.19 TCGA-BR-7717-01 2 1426885 1426885 T C TPO Missense_Mutation p.Y55H 0.62 tolerated(0.38) benign(0.029) TCGA-BR-7717-01 2 160020039 160020039 C G TANC1 Missense_Mutation p.R310G 0.06 deleterious(0) probably_damaging(0.971) TCGA-BR-7717-01 2 179398445 179398445 T C TTN Silent p.K34299K 0.06 TCGA-BR-7717-01 2 179600768 179600768 T G TTN Missense_Mutation p.K4802T 0.57 TCGA-BR-7717-01 2 179658255 179658255 G A TTN Missense_Mutation p.A471V 0.23 TCGA-BR-7717-01 2 180047841 180047841 T G SESTD1 Missense_Mutation p.S44R 0.08 deleterious(0.04) benign(0.025) TCGA-BR-7717-01 2 210559425 210559425 G A MAP2 Missense_Mutation p.R844H 0.18 deleterious(0.02) benign(0.005) TCGA-BR-7717-01 2 210560109 210560109 T G MAP2 Missense_Mutation p.L1072R 0.45 tolerated_low_confidence(0.4) possibly_damaging(0.653) TCGA-BR-7717-01 2 215802240 215802240 G A ABCA12 Silent p.Y2512Y 0.49 TCGA-BR-7717-01 2 26697430 26697430 C T OTOF Missense_Mutation p.R1080H 0.57 tolerated(0.1) probably_damaging(0.995) TCGA-BR-7717-01 2 37543700 37543700 G A PRKD3 5'UTR 0.25 TCGA-BR-7717-01 2 47357028 47357028 C T C2orf61 Intron 0.10 TCGA-BR-7717-01 2 50573836 50573836 G A NRXN1 Intron 0.07 TCGA-BR-7717-01 2 64211037 64211037 C G VPS54 Missense_Mutation p.V33L 0.31 deleterious_low_confidence(0.03) benign(0.232) TCGA-BR-7717-01 2 65571938 65571938 C T SPRED2 Missense_Mutation p.R40H 0.09 tolerated(0.59) probably_damaging(0.936) TCGA-BR-7717-01 2 71795434 71795434 T C DYSF Missense_Mutation p.W944R 0.24 deleterious(0) probably_damaging(0.998) TCGA-BR-7717-01 2 97530998 97530998 G A SEMA4C Missense_Mutation p.R193C 0.10 deleterious(0) probably_damaging(1) TCGA-BR-7717-01 2 99204053 99204053 C T INPP4A Silent p.Y972Y 0.11 TCGA-BR-7717-01 3 10331490 10331490 C T GHRL Missense_Mutation p.D61N 0.26 deleterious(0.04) possibly_damaging(0.688) TCGA-BR-7717-01 3 119135177 119135177 T G ARHGAP31 3'UTR 0.20 TCGA-BR-7717-01 3 123166565 123166565 G A ADCY5 Silent p.A276A 0.22 TCGA-BR-7717-01 3 15736313 15736313 T A ANKRD28 Missense_Mutation p.E535V 0.58 deleterious(0.04) benign(0.09) TCGA-BR-7717-01 3 160137276 160137276 A G SMC4 Missense_Mutation p.D601G 0.27 tolerated(0.06) benign(0.033) TCGA-BR-7717-01 3 194118890 194118890 G A GP5 Missense_Mutation p.A41V 0.17 tolerated(0.07) benign(0.229) TCGA-BR-7717-01 3 42956441 42956441 G A ZNF662 Silent p.T318T 0.23 TCGA-BR-7717-01 3 68802041 68802041 T G FAM19A4 Missense_Mutation p.T87P 0.19 deleterious(0) probably_damaging(1) TCGA-BR-7717-01 3 97851635 97851635 T C OR5H1 Silent p.L32L 0.24 TCGA-BR-7717-01 4 1388597 1388597 G A CRIPAK Missense_Mutation p.V100M 0.47 tolerated_low_confidence(0.1) benign(0.154) TCGA-BR-7717-01 4 156863522 156863522 T G CTSO Silent p.R111R 0.51 TCGA-BR-7717-01 4 166929130 166929130 G A TLL1 Missense_Mutation p.E283K 0.69 deleterious(0.03) benign(0.392) TCGA-BR-7717-01 4 169362498 169362498 C T DDX60L Silent p.S428S 0.06 TCGA-BR-7717-01 4 4419002 4419002 C T NSG1 Missense_Mutation p.A133V 0.30 deleterious(0.02) benign(0.031) TCGA-BR-7717-01 4 44449752 44449752 C G KCTD8 Missense_Mutation p.E263D 0.07 tolerated(0.35) probably_damaging(0.97) TCGA-BR-7717-01 4 5624326 5624326 G A EVC2 Silent p.D813D 0.17 TCGA-BR-7717-01 4 56765938 56765938 G A EXOC1 Missense_Mutation p.R742Q 0.16 tolerated(1) benign(0.065) TCGA-BR-7717-01 4 68619666 68619666 A G GNRHR Missense_Mutation p.F130L 0.77 tolerated(0.1) probably_damaging(0.998) TCGA-BR-7717-01 5 13771038 13771038 T G DNAH5 Missense_Mutation p.K3142T 0.13 possibly_damaging(0.728) TCGA-BR-7717-01 5 138456726 138456726 G A SIL1 Missense_Mutation p.P81L 0.18 deleterious(0) possibly_damaging(0.869) TCGA-BR-7717-01 5 140594778 140594778 G A PCDHB13 Silent p.A361A 0.18 TCGA-BR-7717-01 5 170239126 170239126 G A GABRP Missense_Mutation p.R396Q 0.10 tolerated(0.12) benign(0.289) TCGA-BR-7717-01 5 23510114 23510114 A C PRDM9 Missense_Mutation p.E93D 0.10 tolerated_low_confidence(0.08) benign(0.018) TCGA-BR-7717-01 5 38950621 38950621 C T RICTOR Missense_Mutation p.R1110H 0.06 deleterious(0.03) probably_damaging(0.999) TCGA-BR-7717-01 6 116837189 116837189 A G FAM26E 3'UTR 0.34 TCGA-BR-7717-01 6 129634198 129634198 A T LAMA2 Nonsense_Mutation p.K1123* 0.11 TCGA-BR-7717-01 6 137329826 137329826 T C IL20RA Missense_Mutation p.T212A 0.03 deleterious(0) probably_damaging(0.989) TCGA-BR-7717-01 6 150210686 150210686 G A RAET1E Silent p.F140F 0.69 TCGA-BR-7717-01 6 28472219 28472219 C T GPX6 Silent p.E172E 0.10 TCGA-BR-7717-01 6 28539970 28539970 G C SCAND3 Silent p.T1232T 0.24 TCGA-BR-7717-01 6 28540574 28540574 G C SCAND3 Missense_Mutation p.S1031C 0.23 tolerated(0.08) benign(0.003) TCGA-BR-7717-01 6 29323795 29323795 A G OR5V1 Missense_Mutation p.Y60H 0.20 deleterious(0) probably_damaging(0.999) TCGA-BR-7717-01 6 34026856 34026858 AGA - GRM4 In_Frame_Del p.F307del 0.18 TCGA-BR-7717-01 6 34499470 34499470 C T PACSIN1 Silent p.G377G 0.43 TCGA-BR-7717-01 6 41773985 41773985 G A USP49 Missense_Mutation p.P246L 0.11 deleterious(0.05) benign(0.006) TCGA-BR-7717-01 6 42712693 42712693 T G TBCC 3'UTR 0.31 TCGA-BR-7717-01 6 42712695 42712695 A T TBCC 3'UTR 0.31 TCGA-BR-7717-01 6 44268376 44268376 C T AARS2 Missense_Mutation p.G956S 0.20 deleterious(0) probably_damaging(0.999) TCGA-BR-7717-01 6 86346762 86346762 G A SYNCRIP Missense_Mutation p.P197S 0.18 deleterious(0) probably_damaging(0.99) TCGA-BR-7717-01 6 99284012 99284012 C T POU3F2 Silent p.G421G 0.06 TCGA-BR-7717-01 7 111509683 111509683 C T DOCK4 Missense_Mutation p.V686M 0.56 tolerated(0.85) benign(0.011) TCGA-BR-7717-01 7 33397540 33397540 A T BBS9 Missense_Mutation p.K542N 0.16 deleterious(0) probably_damaging(0.976) TCGA-BR-7717-01 7 4249744 4249744 G A SDK1 Missense_Mutation p.G1830D 0.17 deleterious(0) probably_damaging(1) TCGA-BR-7717-01 7 48314870 48314870 A G ABCA13 Silent p.E1869E 0.05 TCGA-BR-7717-01 7 77973216 77973216 T A MAGI2 Silent p.L429L 0.27 TCGA-BR-7717-01 8 131073067 131073067 G C ASAP1 Missense_Mutation p.P984A 0.20 tolerated(0.1) probably_damaging(0.997) TCGA-BR-7717-01 8 13959935 13959935 A C SGCZ Missense_Mutation p.F232V 0.19 tolerated(0.22) benign(0.015) TCGA-BR-7717-01 8 13965704 13965704 C T SGCZ Silent p.P196P 0.19 TCGA-BR-7717-01 8 146015800 146015800 C T RPL8 Silent p.A185A 0.07 TCGA-BR-7717-01 8 28218664 28218664 G A ZNF395 5'UTR 0.21 TCGA-BR-7717-01 8 37914619 37914619 C T EIF4EBP1 Missense_Mutation p.R56W 0.29 deleterious(0) probably_damaging(0.985) TCGA-BR-7717-01 8 42019858 42019858 C T AP3M2 Missense_Mutation p.R169W 0.28 deleterious(0) probably_damaging(0.999) TCGA-BR-7717-01 8 52321502 52321502 G A PXDNL Silent p.I894I 0.16 TCGA-BR-7717-01 9 104449347 104449347 A C GRIN3A Missense_Mutation p.F279V 0.08 tolerated(0.19) possibly_damaging(0.625) TCGA-BR-7717-01 9 115955819 115955819 G C FKBP15 Missense_Mutation p.L340V 0.50 tolerated(0.95) benign(0.255) TCGA-BR-7717-01 9 131749930 131749930 C G NUP188 Missense_Mutation p.T776R 0.45 deleterious(0.01) possibly_damaging(0.643) TCGA-BR-7717-01 9 21367555 21367555 G C IFNA13 Missense_Mutation p.T152S 0.24 tolerated(0.39) benign(0.008) TCGA-BR-7717-01 9 6610288 6610288 T C GLDC Missense_Mutation p.Q180R 0.37 deleterious(0) probably_damaging(0.996) TCGA-BR-7717-01 X 112022884 112022884 C T AMOT Missense_Mutation p.R833H 0.08 unknown(0) TCGA-BR-7717-01 X 11786716 11786716 C T MSL3 Missense_Mutation p.S399F 0.33 deleterious(0) probably_damaging(0.973) TCGA-BR-7717-01 X 136113611 136113611 C T GPR101 Missense_Mutation p.V75I 0.42 tolerated(0.39) benign(0.062) TCGA-BR-7717-01 X 152773819 152773819 C T BGN Silent p.P341P 0.48 TCGA-BR-7717-01 X 44922785 44922785 G C KDM6A Missense_Mutation p.R549T 0.11 deleterious_low_confidence(0) possibly_damaging(0.864) TCGA-BR-7717-01 X 67941951 67941951 C T STARD8 Missense_Mutation p.A841V 0.27 deleterious(0) possibly_damaging(0.717) TCGA-BR-7717-01 X 68382337 68382337 T A PJA1 Nonsense_Mutation p.K249* 0.54 TCGA-BR-7717-01 X 68382338 68382338 T A PJA1 Silent p.S248S 0.57 TCGA-BR-7717-01 X 88009038 88009038 T A CPXCR1 Missense_Mutation p.L208H 0.29 deleterious(0.03) benign(0.001) TCGA-BR-7722-01 11 10673689 10673689 G A MRVI1 Silent p.D36D 0.21 TCGA-BR-7722-01 11 107960310 107960310 C T CUL5 Missense_Mutation p.A468V 0.46 deleterious(0.03) possibly_damaging(0.807) TCGA-BR-7722-01 11 117299181 117299181 C T DSCAML1 Missense_Mutation p.E2069K 0.42 tolerated_low_confidence(0.75) benign(0.009) TCGA-BR-7722-01 11 28318379 28318379 G A METTL15 Missense_Mutation p.G227R 0.35 deleterious(0) probably_damaging(0.999) TCGA-BR-7722-01 11 419621 419621 C T ANO9 Missense_Mutation p.R632H 0.38 tolerated(0.58) benign(0.049) TCGA-BR-7722-01 11 57319798 57319798 G A UBE2L6 3'UTR 0.06 TCGA-BR-7722-01 11 6898608 6898608 G T OR10A4 Missense_Mutation p.A244S 0.08 tolerated(1) benign(0) TCGA-BR-7722-01 12 105433512 105433512 A G ALDH1L2 Missense_Mutation p.I675T 0.36 tolerated(0.13) benign(0.019) TCGA-BR-7722-01 12 120652936 120652936 G A PXN Silent p.C372C 0.13 TCGA-BR-7722-01 12 129563254 129563254 G A TMEM132D Missense_Mutation p.S647L 0.38 deleterious(0) possibly_damaging(0.749) TCGA-BR-7722-01 12 130185232 130185232 G T TMEM132D Silent p.R31R 0.21 TCGA-BR-7722-01 13 114193756 114193756 G A TMCO3 Missense_Mutation p.E542K 0.33 deleterious(0.05) benign(0.311) TCGA-BR-7722-01 14 106994054 106994054 C A IGHV3-48 Silent p.L37L 0.28 TCGA-BR-7722-01 15 44913993 44913993 G A SPG11 Nonsense_Mutation p.Q862* 0.22 TCGA-BR-7722-01 15 73617682 73617682 T A HCN4 Missense_Mutation p.D565V 0.29 deleterious(0) unknown(0) TCGA-BR-7722-01 15 78894525 78894525 G A CHRNA3 Silent p.A153A 0.29 TCGA-BR-7722-01 16 780985 780985 C T NARFL Silent p.Q350Q 0.12 TCGA-BR-7722-01 17 79686863 79686863 C T SLC25A10 Silent p.G245G 0.04 TCGA-BR-7722-01 18 40503659 40503659 T A RIT2 Missense_Mutation p.T102S 0.03 deleterious(0.02) benign(0.323) TCGA-BR-7722-01 18 48591925 48591925 G A SMAD4 Missense_Mutation p.C363Y 0.48 deleterious(0) probably_damaging(1) TCGA-BR-7722-01 19 38190612 38190612 T C ZNF607 Silent p.E140E 0.30 TCGA-BR-7722-01 19 39016073 39016073 C G RYR1 Silent p.P3519P 0.38 TCGA-BR-7722-01 19 40389651 40389651 C T FCGBP Splice_Site p.X2844_splice 0.13 TCGA-BR-7722-01 19 45854575 45854575 G A KLC3 Missense_Mutation p.R492Q 0.26 deleterious(0) benign(0.176) TCGA-BR-7722-01 19 55703088 55703088 A G PTPRH Missense_Mutation p.V760A 0.31 benign(0.143) TCGA-BR-7722-01 19 58489997 58489997 T C ZNF606 Missense_Mutation p.Q684R 0.07 deleterious(0.01) probably_damaging(0.988) TCGA-BR-7722-01 19 59074541 59074541 C T MZF1 Missense_Mutation p.R368H 0.14 deleterious(0.03) probably_damaging(0.991) TCGA-BR-7722-01 1 104112972 104112972 G C AMY2B Intron 0.34 TCGA-BR-7722-01 1 158517584 158517584 A T OR6Y1 Silent p.T104T 0.42 TCGA-BR-7722-01 1 181724450 181724450 C T CACNA1E Silent p.I1302I 0.36 TCGA-BR-7722-01 1 220357408 220357408 A C RAB3GAP2 Missense_Mutation p.D656E 0.20 tolerated(0.85) benign(0.003) TCGA-BR-7722-01 1 27100199 27100200 - G ARID1A Frame_Shift_Ins p.Q1333Afs*5 0.21 TCGA-BR-7722-01 1 28857064 28857064 C T RCC1 Missense_Mutation p.P35S 0.30 tolerated(0.08) benign(0.144) TCGA-BR-7722-01 1 29070218 29070218 A G YTHDF2 Missense_Mutation p.Y479C 0.35 deleterious(0) probably_damaging(0.995) TCGA-BR-7722-01 1 36809854 36809854 G A STK40 Missense_Mutation p.R251C 0.39 tolerated(0.18) benign(0.017) TCGA-BR-7722-01 20 49626831 49626831 C T KCNG1 Silent p.A15A 0.13 TCGA-BR-7722-01 22 32352435 32352435 T G YWHAH Missense_Mutation p.Y133D 0.31 deleterious_low_confidence(0) probably_damaging(1) TCGA-BR-7722-01 22 40800320 40800320 G A SGSM3 Missense_Mutation p.R76Q 0.30 tolerated(0.49) benign(0.006) TCGA-BR-7722-01 22 41924552 41924552 G A ACO2 Missense_Mutation p.E760K 0.29 tolerated_low_confidence(0.07) benign(0.182) TCGA-BR-7722-01 2 170033000 170033000 G A LRP2 Missense_Mutation p.R3498C 0.37 possibly_damaging(0.513) TCGA-BR-7722-01 2 187540409 187540409 G - ITGAV Frame_Shift_Del p.V929* 0.40 TCGA-BR-7722-01 3 129151293 129151293 T C MBD4 Intron 0.05 TCGA-BR-7722-01 3 150931958 150931958 G A P2RY14 Silent p.Y49Y 0.24 TCGA-BR-7722-01 3 4699844 4699844 C T ITPR1 Missense_Mutation p.R330W 0.16 deleterious(0.01) possibly_damaging(0.806) TCGA-BR-7722-01 3 49412907 49412907 A C RHOA Missense_Mutation p.F39C 0.45 deleterious(0) probably_damaging(0.999) TCGA-BR-7722-01 4 123265668 123265668 G T KIAA1109 Missense_Mutation p.V4229L 0.30 benign(0.004) TCGA-BR-7722-01 4 80975471 80975471 G C ANTXR2 Missense_Mutation p.F197L 0.34 deleterious(0) probably_damaging(0.925) TCGA-BR-7722-01 5 114878880 114878880 T C FEM1C Missense_Mutation p.N104S 0.10 tolerated(0.86) benign(0.001) TCGA-BR-7722-01 5 132056301 132056301 G A KIF3A Missense_Mutation p.R206C 0.26 deleterious(0) probably_damaging(1) TCGA-BR-7722-01 5 180665164 180665164 C T GNB2L1 Missense_Mutation p.A238T 0.04 deleterious(0.03) benign(0.363) TCGA-BR-7722-01 5 90052364 90052364 C T GPR98 Missense_Mutation p.R3892W 0.05 benign(0) TCGA-BR-7722-01 6 30680092 30680092 C T MDC1 Missense_Mutation p.V543M 0.29 deleterious(0.02) probably_damaging(0.991) TCGA-BR-7722-01 7 94928393 94928393 G A PON1 Silent p.L311L 0.33 TCGA-BR-7722-01 7 96651436 96651436 C T DLX5 Intron 0.20 TCGA-BR-7722-01 8 113243795 113243795 G T CSMD3 Missense_Mutation p.Q3603K 0.10 tolerated(0.39) benign(0.029) TCGA-BR-7722-01 8 24207414 24207414 G A ADAM28 Silent p.A676A 0.28 TCGA-BR-7722-01 9 125437839 125437839 T C OR1L3 Missense_Mutation p.L144P 0.67 deleterious(0) probably_damaging(0.996) TCGA-BR-7722-01 9 140446797 140446797 C T MRPL41 Silent p.A88A 0.54 TCGA-BR-7722-01 9 140850187 140850187 C T CACNA1B Missense_Mutation p.R370C 0.22 deleterious(0.04) benign(0.255) TCGA-BR-7722-01 9 21206898 21206898 C G IFNA10 Missense_Mutation p.D67H 0.63 tolerated(0.06) benign(0.111) TCGA-BR-7723-01 10 123843296 123843296 T A TACC2 Silent p.A427A 0.23 TCGA-BR-7723-01 10 25464328 25464328 T C GPR158 5'UTR 0.37 TCGA-BR-7723-01 10 28224130 28224130 C A ARMC4 Missense_Mutation p.Q768H 0.16 deleterious(0) probably_damaging(1) TCGA-BR-7723-01 10 3147323 3147323 G A PFKP Missense_Mutation p.V213I 0.17 tolerated(0.28) benign(0.235) TCGA-BR-7723-01 11 1016757 1016757 G A MUC6 Missense_Mutation p.S2015F 0.03 probably_damaging(0.992) TCGA-BR-7723-01 11 107663456 107663456 G A SLC35F2 Missense_Mutation p.T337I 0.06 deleterious(0.02) possibly_damaging(0.865) TCGA-BR-7723-01 11 108383530 108383530 A T EXPH5 Missense_Mutation p.S902T 0.14 deleterious(0.02) possibly_damaging(0.796) TCGA-BR-7723-01 11 110451100 110451100 A G ARHGAP20 Missense_Mutation p.L857P 0.14 deleterious(0) probably_damaging(0.969) TCGA-BR-7723-01 11 112046403 112046403 C T BCO2 Missense_Mutation p.R27W 0.11 tolerated_low_confidence(0.19) benign(0.002) TCGA-BR-7723-01 11 117864106 117864106 A C IL10RA Missense_Mutation p.K173T 0.15 deleterious(0.01) possibly_damaging(0.577) TCGA-BR-7723-01 11 121174091 121174091 C T SC5D Missense_Mutation p.L3F 0.13 deleterious(0.01) possibly_damaging(0.488) TCGA-BR-7723-01 11 123754862 123754862 T C TMEM225 Missense_Mutation p.Q128R 0.26 deleterious(0.01) benign(0.005) TCGA-BR-7723-01 11 1267074 1267074 G A MUC5B Silent p.G2988G 0.18 TCGA-BR-7723-01 11 18062241 18062241 G C TPH1 Silent p.S23S 0.22 TCGA-BR-7723-01 11 18956338 18956338 A T MRGPRX1 5'UTR 0.41 TCGA-BR-7723-01 11 44074584 44074584 A C ACCSL Missense_Mutation p.K305T 0.27 deleterious(0) probably_damaging(0.993) TCGA-BR-7723-01 11 4674666 4674666 C T OR51E1 Missense_Mutation p.R304C 0.19 deleterious(0) probably_damaging(0.992) TCGA-BR-7723-01 11 5686758 5686758 G A TRIM5 Intron 0.11 TCGA-BR-7723-01 11 62064966 62064966 G A SCGB1D4 Nonsense_Mutation p.R74* 0.19 TCGA-BR-7723-01 11 62298581 62298581 A G AHNAK Missense_Mutation p.I1103T 0.38 possibly_damaging(0.669) TCGA-BR-7723-01 11 65341036 65341036 C T FAM89B Missense_Mutation p.P165L 0.29 tolerated(0.05) probably_damaging(0.995) TCGA-BR-7723-01 11 6913041 6913041 T G OR2D2 Missense_Mutation p.T231P 0.35 deleterious(0.01) possibly_damaging(0.555) TCGA-BR-7723-01 11 82938901 82938901 T A ANKRD42 Silent p.T272T 0.25 TCGA-BR-7723-01 12 109844646 109844646 T G MYO1H Missense_Mutation p.I323S 0.34 deleterious(0) probably_damaging(0.998) TCGA-BR-7723-01 12 11546745 11546745 A G PRB2 Silent p.P89P 0.14 TCGA-BR-7723-01 12 117909125 117909125 G T KSR2 Silent p.G861G 0.14 TCGA-BR-7723-01 12 123794051 123794051 G A SBNO1 Silent p.H1174H 0.15 TCGA-BR-7723-01 12 15811059 15811059 G C EPS8 Missense_Mutation p.P352R 0.07 deleterious(0) probably_damaging(0.999) TCGA-BR-7723-01 12 20876091 20876091 T A SLCO1C1 Silent p.T363T 0.15 TCGA-BR-7723-01 12 25047227 25047227 A C BCAT1 Silent p.A99A 0.08 TCGA-BR-7723-01 12 43821195 43821195 G A ADAMTS20 Silent p.Y1341Y 0.05 TCGA-BR-7723-01 12 53010156 53010156 G A KRT73 Silent p.F152F 0.31 TCGA-BR-7723-01 12 56335305 56335305 A C DGKA Missense_Mutation p.K396T 0.22 deleterious(0.03) probably_damaging(1) TCGA-BR-7723-01 12 58002964 58002964 T C DTX3 3'UTR 0.34 TCGA-BR-7723-01 12 78598848 78598848 G - NAV3 Frame_Shift_Del p.S2301Tfs*24 0.09 TCGA-BR-7723-01 12 94763808 94763808 T C CCDC41 Missense_Mutation p.K313R 0.31 deleterious(0) benign(0.1) TCGA-BR-7723-01 12 96273421 96273421 C G CCDC38 Splice_Site p.X381_splice 0.15 TCGA-BR-7723-01 13 32972435 32972435 A C BRCA2 Missense_Mutation p.Q3262P 0.19 tolerated(1) benign(0.001) TCGA-BR-7723-01 13 32972587 32972587 A C BRCA2 Missense_Mutation p.K3313Q 0.31 tolerated(0.09) probably_damaging(0.956) TCGA-BR-7723-01 13 42465633 42465633 A G VWA8 Silent p.L192L 0.11 TCGA-BR-7723-01 13 61985896 61985896 A G PCDH20 Missense_Mutation p.V779A 0.15 tolerated(0.24) possibly_damaging(0.449) TCGA-BR-7723-01 13 78493701 78493701 C T EDNRB Nonsense_Mutation p.W17* 0.37 TCGA-BR-7723-01 13 88328652 88328652 C A SLITRK5 Missense_Mutation p.P337T 0.06 deleterious(0) benign(0.109) TCGA-BR-7723-01 14 39709847 39709847 C T MIA2 Missense_Mutation p.T111M 0.09 deleterious(0) probably_damaging(0.996) TCGA-BR-7723-01 14 45433301 45433301 A G FAM179B Silent p.Q559Q 0.20 TCGA-BR-7723-01 14 55881108 55881108 T A TBPL2 Nonsense_Mutation p.K373* 0.50 TCGA-BR-7723-01 14 63416847 63416847 T C KCNH5 Intron 0.16 TCGA-BR-7723-01 14 65406340 65406340 G A GPX2 Missense_Mutation p.R147C 0.15 deleterious(0) probably_damaging(0.998) TCGA-BR-7723-01 14 94060075 94060075 G A UNC79 Missense_Mutation p.V851I 0.12 tolerated(0.06) benign(0.267) TCGA-BR-7723-01 15 24921670 24921670 A T NPAP1 Missense_Mutation p.N219I 0.14 tolerated(0.05) benign(0.362) TCGA-BR-7723-01 15 44816331 44816331 A G CTDSPL2 Missense_Mutation p.R454G 0.17 deleterious(0.02) benign(0.13) TCGA-BR-7723-01 15 74659825 74659825 A G CYP11A1 Silent p.T34T 0.31 TCGA-BR-7723-01 15 82335547 82335547 G A MEX3B Missense_Mutation p.P555L 0.21 deleterious(0) probably_damaging(0.999) TCGA-BR-7723-01 15 90023598 90023598 G A RHCG Silent p.G188G 0.23 TCGA-BR-7723-01 15 99434708 99434708 G A IGF1R Silent p.P265P 0.24 TCGA-BR-7723-01 16 20576139 20576139 A C ACSM2B Missense_Mutation p.L10R 0.12 deleterious(0.01) benign(0.024) TCGA-BR-7723-01 16 31157137 31157137 G A PRSS36 Silent p.Y231Y 0.18 TCGA-BR-7723-01 16 54967389 54967389 C G IRX5 Silent p.G352G 0.33 TCGA-BR-7723-01 16 58612764 58612764 A C CNOT1 Missense_Mutation p.F475V 0.37 tolerated(0.47) benign(0.02) TCGA-BR-7723-01 16 70697994 70697994 C T MTSS1L Silent p.A610A 0.40 TCGA-BR-7723-01 16 81314536 81314536 A G BCMO1 Silent p.Q392Q 0.38 TCGA-BR-7723-01 16 88691082 88691082 C T ZC3H18 Silent p.P657P 0.11 TCGA-BR-7723-01 17 30349600 30349600 C T LRRC37B Nonsense_Mutation p.Q479* 0.15 TCGA-BR-7723-01 17 33520327 33520327 C A SLC35G3 Missense_Mutation p.G334W 0.08 deleterious(0) possibly_damaging(0.695) TCGA-BR-7723-01 17 40945635 40945635 C T WNK4 Missense_Mutation p.S728L 0.16 tolerated(0.06) unknown(0) TCGA-BR-7723-01 17 43908305 43908308 AAGT - CRHR1 Splice_Site p.X286_splice 0.15 TCGA-BR-7723-01 17 48433527 48433527 C T XYLT2 Missense_Mutation p.R463C 0.13 deleterious(0) probably_damaging(1) TCGA-BR-7723-01 17 51901040 51901040 G A KIF2B Missense_Mutation p.V216I 0.19 deleterious(0) possibly_damaging(0.467) TCGA-BR-7723-01 17 61766936 61766936 C A MAP3K3 Missense_Mutation p.Q333K 0.19 tolerated(0.06) probably_damaging(0.939) TCGA-BR-7723-01 17 62026057 62026057 G C SCN4A Missense_Mutation p.L1020V 0.29 tolerated(0.07) possibly_damaging(0.612) TCGA-BR-7723-01 17 6374626 6374626 C A PITPNM3 Silent p.R493R 0.19 TCGA-BR-7723-01 17 7577156 7577156 C T TP53 Splice_Site p.X261_splice 0.78 TCGA-BR-7723-01 18 20529656 20529656 C A RBBP8 Silent p.T76T 0.30 TCGA-BR-7723-01 18 48703728 48703728 C T MEX3C Missense_Mutation p.G325S 0.31 deleterious(0) probably_damaging(0.995) TCGA-BR-7723-01 19 10158055 10158055 A C C3P1 RNA 0.20 TCGA-BR-7723-01 19 10665849 10665849 C T KRI1 Silent p.E571E 0.46 TCGA-BR-7723-01 19 20117991 20117991 C T ZNF682 Missense_Mutation p.G107E 0.24 tolerated(0.12) benign(0.286) TCGA-BR-7723-01 19 20727642 20727642 T C ZNF737 Missense_Mutation p.E456G 0.41 deleterious(0.01) possibly_damaging(0.52) TCGA-BR-7723-01 19 37368345 37368345 A G ZNF345 Missense_Mutation p.I205V 0.36 deleterious(0.03) benign(0.001) TCGA-BR-7723-01 19 38795285 38795285 G A C19orf33 Missense_Mutation p.D54N 0.29 tolerated_low_confidence(0.07) probably_damaging(0.913) TCGA-BR-7723-01 19 38991278 38991278 G A RYR1 Silent p.R2452R 0.15 TCGA-BR-7723-01 19 45899878 45899878 C T PPP1R13L Missense_Mutation p.A213T 0.64 tolerated(0.3) benign(0.026) TCGA-BR-7723-01 19 51226759 51226759 T G CLEC11A 5'UTR 0.30 TCGA-BR-7723-01 19 51728508 51728508 A T CD33 Missense_Mutation p.Q24H 0.10 deleterious(0.02) benign(0.034) TCGA-BR-7723-01 19 52918410 52918410 A T ZNF528 Missense_Mutation p.N102I 0.06 tolerated(0.14) benign(0.057) TCGA-BR-7723-01 19 53945076 53945076 A C TPM3P9 RNA 0.25 TCGA-BR-7723-01 19 54238162 54238162 T A MIR518D RNA 0.23 TCGA-BR-7723-01 19 54407962 54407962 C T PRKCG Missense_Mutation p.S577L 0.13 tolerated(0.64) possibly_damaging(0.699) TCGA-BR-7723-01 19 54755967 54755967 C T LILRB5 Missense_Mutation p.A527T 0.22 deleterious(0.03) benign(0.053) TCGA-BR-7723-01 19 57060356 57060356 T G ZFP28 Missense_Mutation p.L185V 0.21 tolerated(0.15) benign(0.118) TCGA-BR-7723-01 19 58152621 58152621 T A ZNF211 Missense_Mutation p.L321H 0.09 tolerated(0.54) probably_damaging(0.974) TCGA-BR-7723-01 19 58189377 58189377 A C ZSCAN4 Missense_Mutation p.Q164H 0.15 deleterious(0.02) benign(0.002) TCGA-BR-7723-01 19 8369960 8369960 C G CD320 Missense_Mutation p.D75H 0.08 deleterious(0) probably_damaging(1) TCGA-BR-7723-01 1 147381267 147381267 G T GJA8 Silent p.G395G 0.09 TCGA-BR-7723-01 1 152323733 152323733 T C FLG2 Missense_Mutation p.R2177G 0.13 benign(0.017) TCGA-BR-7723-01 1 158261177 158261177 A T CD1C Missense_Mutation p.Q105H 0.11 deleterious(0.05) benign(0.028) TCGA-BR-7723-01 1 158324361 158324361 T G CD1E Missense_Mutation p.F85V 0.08 deleterious(0) possibly_damaging(0.471) TCGA-BR-7723-01 1 159170731 159170731 T G CADM3 3'UTR 0.44 TCGA-BR-7723-01 1 159752111 159752111 T G DUSP23 Missense_Mutation p.Y146D 0.23 tolerated(0.07) benign(0.297) TCGA-BR-7723-01 1 176811627 176811627 G C PAPPA2 3'UTR 0.21 TCGA-BR-7723-01 1 200090021 200090021 G A NR5A2 Missense_Mutation p.R439H 0.15 tolerated(0.53) benign(0.014) TCGA-BR-7723-01 1 201185695 201185695 G A IGFN1 Missense_Mutation p.V3137M 0.34 possibly_damaging(0.559) TCGA-BR-7723-01 1 207317917 207317917 T C C4BPA Missense_Mutation p.L550P 0.41 tolerated(0.11) possibly_damaging(0.762) TCGA-BR-7723-01 1 222721161 222721161 G A HHIPL2 Missense_Mutation p.R76C 0.13 tolerated(0.06) benign(0.011) TCGA-BR-7723-01 1 225592318 225592330 CAATACTTACGTG - LBR Splice_Site p.X521_splice 0.26 TCGA-BR-7723-01 1 247614817 247614817 G T OR2B11 Silent p.G156G 0.49 TCGA-BR-7723-01 1 247978499 247978499 T A OR14A16 Missense_Mutation p.D178V 0.40 deleterious(0) probably_damaging(0.993) TCGA-BR-7723-01 1 248308897 248308897 A G OR2M5 Missense_Mutation p.I150V 0.10 tolerated(0.4) benign(0.042) TCGA-BR-7723-01 1 248569626 248569626 T G OR2T1 Missense_Mutation p.F111V 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-BR-7723-01 1 74648428 74648428 T G LRRIQ3 Missense_Mutation p.T123P 0.54 deleterious(0.01) benign(0.032) TCGA-BR-7723-01 1 74957799 74957799 A C TNNI3K Missense_Mutation p.S835R 0.16 tolerated_low_confidence(0.09) possibly_damaging(0.462) TCGA-BR-7723-01 1 79404899 79404899 C A ELTD1 Missense_Mutation p.A124S 0.32 tolerated(0.28) benign(0.01) TCGA-BR-7723-01 1 9795564 9795564 G A CLSTN1 Missense_Mutation p.T615M 0.12 deleterious(0) probably_damaging(0.999) TCGA-BR-7723-01 20 25478911 25478911 C T NINL Missense_Mutation p.M368I 0.23 deleterious(0.05) benign(0.109) TCGA-BR-7723-01 20 31388003 31388003 G A DNMT3B Missense_Mutation p.V602I 0.08 tolerated(1) benign(0.034) TCGA-BR-7723-01 20 43374604 43374604 A G KCNK15 Missense_Mutation p.Y18C 0.14 deleterious(0) probably_damaging(1) TCGA-BR-7723-01 20 51870079 51870079 A C TSHZ2 Missense_Mutation p.K28Q 0.67 tolerated(0.28) probably_damaging(0.987) TCGA-BR-7723-01 20 60913351 60913351 C A LAMA5 Missense_Mutation p.G565C 0.25 probably_damaging(1) TCGA-BR-7723-01 21 14417520 14417520 A G RNU6-614P 5'Flank 0.09 TCGA-BR-7723-01 21 47574136 47574136 C T FTCD Silent p.P55P 0.30 TCGA-BR-7723-01 22 43442565 43442565 C T TTLL1 Silent p.P331P 0.23 TCGA-BR-7723-01 2 107459867 107459867 G A ST6GAL2 Silent p.G189G 0.35 TCGA-BR-7723-01 2 108488780 108488780 A G RGPD4 Silent p.K1440K 0.36 TCGA-BR-7723-01 2 141812802 141812802 G C LRP1B Missense_Mutation p.P479A 0.44 possibly_damaging(0.539) TCGA-BR-7723-01 2 145154151 145154151 C A ZEB2 Missense_Mutation p.L965F 0.14 deleterious(0.03) probably_damaging(0.916) TCGA-BR-7723-01 2 1497732 1497732 T C TPO Missense_Mutation p.F643L 0.09 tolerated(0.47) benign(0.044) TCGA-BR-7723-01 2 165986737 165986737 C A SCN3A Missense_Mutation p.V879L 0.05 tolerated(0.05) possibly_damaging(0.615) TCGA-BR-7723-01 2 167055965 167055965 T C SCN9A Silent p.G1717G 0.17 TCGA-BR-7723-01 2 175431818 175431818 A G WIPF1 Missense_Mutation p.L479P 0.07 deleterious(0.01) benign(0.147) TCGA-BR-7723-01 2 179407393 179407393 A T TTN Silent p.I32396I 0.33 TCGA-BR-7723-01 2 207174303 207174303 A G ZDBF2 Missense_Mutation p.H1684R 0.35 tolerated(0.13) benign(0) TCGA-BR-7723-01 2 210884513 210884513 T C RPE Nonstop_Mutation p.*229Rext*69 0.16 TCGA-BR-7723-01 2 31572645 31572645 T G XDH Missense_Mutation p.K959T 0.20 tolerated(0.51) benign(0.063) TCGA-BR-7723-01 2 32724719 32724719 C T BIRC6 Silent p.A2858A 0.15 TCGA-BR-7723-01 2 44459579 44459579 C T PPM1B 3'Flank 0.29 TCGA-BR-7723-01 2 49381499 49381499 G T FSHR Missense_Mutation p.H20N 0.24 tolerated(0.27) benign(0.004) TCGA-BR-7723-01 2 68882556 68882556 A G PROKR1 Missense_Mutation p.T344A 0.11 tolerated(0.81) benign(0.001) TCGA-BR-7723-01 2 8919264 8919264 T C KIDINS220 Silent p.R792R 0.14 TCGA-BR-7723-01 2 89292047 89292047 T C IGKV1-8 Missense_Mutation p.S76G 0.19 deleterious(0.01) benign(0.045) TCGA-BR-7723-01 3 10088405 10088405 T C FANCD2 Silent p.L426L 0.31 TCGA-BR-7723-01 3 100951810 100951810 A G IMPG2 Silent p.F1016F 0.33 TCGA-BR-7723-01 3 101540654 101540654 G A NXPE3 Missense_Mutation p.M512I 0.18 tolerated(0.33) probably_damaging(0.985) TCGA-BR-7723-01 3 113761657 113761657 A G KIAA1407 Missense_Mutation p.L103P 0.20 deleterious(0) probably_damaging(0.996) TCGA-BR-7723-01 3 120115829 120115829 C A FSTL1 Missense_Mutation p.K299N 0.27 deleterious_low_confidence(0.04) benign(0.027) TCGA-BR-7723-01 3 122459454 122459454 G A HSPBAP1 Missense_Mutation p.P402L 0.13 tolerated(0.19) benign(0.004) TCGA-BR-7723-01 3 129277407 129277407 C T PLXND1 Missense_Mutation p.R1770Q 0.20 deleterious(0) probably_damaging(0.917) TCGA-BR-7723-01 3 130187765 130187765 A T COL6A5 Missense_Mutation p.E2306V 0.21 deleterious(0.02) benign(0.126) TCGA-BR-7723-01 3 130354547 130354547 A T COL6A6 Missense_Mutation p.E1678V 0.12 tolerated(0.06) possibly_damaging(0.634) TCGA-BR-7723-01 3 13659633 13659633 T C FBLN2 Missense_Mutation p.L596P 0.28 tolerated(0.27) probably_damaging(0.996) TCGA-BR-7723-01 3 137822699 137822699 T G DZIP1L Missense_Mutation p.S39R 0.55 deleterious(0) probably_damaging(0.911) TCGA-BR-7723-01 3 142681913 142681913 G A PAQR9 Missense_Mutation p.T89M 0.45 deleterious(0) probably_damaging(0.998) TCGA-BR-7723-01 3 179460107 179460107 A T USP13 Missense_Mutation p.L501F 0.48 deleterious(0) probably_damaging(1) TCGA-BR-7723-01 3 43122809 43122809 T C POMGNT2 Missense_Mutation p.S39G 0.11 tolerated_low_confidence(0.5) benign(0) TCGA-BR-7723-01 3 51747059 51747059 C T GRM2 Missense_Mutation p.R341W 0.36 deleterious(0.01) probably_damaging(1) TCGA-BR-7723-01 3 58382783 58382783 T C PXK Silent p.H280H 0.41 TCGA-BR-7723-01 3 79174627 79174627 C T ROBO1 Missense_Mutation p.D51N 0.21 tolerated_low_confidence(0.2) possibly_damaging(0.483) TCGA-BR-7723-01 4 114294571 114294571 G A ANK2 Missense_Mutation p.R3942H 0.15 probably_damaging(1) TCGA-BR-7723-01 4 121957572 121957572 G A NDNF Silent p.F518F 0.10 TCGA-BR-7723-01 4 157771489 157771489 A C PDGFC Silent p.T66T 0.17 TCGA-BR-7723-01 5 130828379 130828379 G A RAPGEF6 Nonsense_Mutation p.Q543* 0.16 TCGA-BR-7723-01 5 135392470 135392470 G A TGFBI Missense_Mutation p.R555Q 0.22 deleterious(0.03) benign(0.229) TCGA-BR-7723-01 5 153429236 153429236 A C MFAP3 5'UTR 0.18 TCGA-BR-7723-01 5 169423161 169423161 A C DOCK2 Missense_Mutation p.E1022A 0.38 deleterious(0) benign(0.437) TCGA-BR-7723-01 5 68498798 68498798 G A CENPH Splice_Site p.X163_splice 0.15 TCGA-BR-7723-01 5 7706939 7706939 C A ADCY2 Missense_Mutation p.L398M 0.12 deleterious(0) probably_damaging(0.99) TCGA-BR-7723-01 5 82816102 82816102 T A VCAN Silent p.S659S 0.14 TCGA-BR-7723-01 5 90136635 90136635 A G GPR98 Missense_Mutation p.T5618A 0.28 possibly_damaging(0.636) TCGA-BR-7723-01 6 101103582 101103582 G A ASCC3 Missense_Mutation p.A939V 0.39 tolerated(0.2) benign(0.009) TCGA-BR-7723-01 6 111696720 111696720 A T REV3L Silent p.P946P 0.33 TCGA-BR-7723-01 6 122740353 122740353 T G HSF2 Missense_Mutation p.L191R 0.13 deleterious(0) possibly_damaging(0.653) TCGA-BR-7723-01 6 152551776 152551776 A T SYNE1 Missense_Mutation p.L7034Q 0.23 probably_damaging(0.998) TCGA-BR-7723-01 6 30951803 30951803 G A MUC21 Intron 0.10 TCGA-BR-7723-01 6 56483374 56483383 TGTGCTGCCC - DST Intron 0.18 TCGA-BR-7723-01 6 72974729 72974729 G A RIMS1 Silent p.Q1056Q 0.18 TCGA-BR-7723-01 6 73904338 73904338 C T KCNQ5 Missense_Mutation p.S686L 0.23 deleterious(0.04) possibly_damaging(0.703) TCGA-BR-7723-01 7 100281681 100281681 C T GIGYF1 Silent p.T610T 0.29 TCGA-BR-7723-01 7 143657492 143657492 G A OR2F1 Silent p.R143R 0.29 TCGA-BR-7723-01 7 151970825 151970825 A C KMT2C Missense_Mutation p.L326R 0.04 probably_damaging(1) TCGA-BR-7723-01 7 20824641 20824641 C T SP8 Silent p.P265P 0.35 TCGA-BR-7723-01 7 30491122 30491122 G A NOD1 Silent p.R637R 0.12 TCGA-BR-7723-01 7 4172020 4172020 G A SDK1 Nonsense_Mutation p.W1398* 0.43 TCGA-BR-7723-01 7 47894629 47894629 C T PKD1L1 Silent p.R1570R 0.23 TCGA-BR-7723-01 7 72419645 72419645 A C POM121 3'UTR 0.21 TCGA-BR-7723-01 7 82544566 82544566 T C PCLO Missense_Mutation p.R4246G 0.27 unknown(0) TCGA-BR-7723-01 7 82545323 82545323 C T PCLO Silent p.T3993T 0.20 TCGA-BR-7723-01 7 82584206 82584206 A C PCLO Missense_Mutation p.H2021Q 0.21 unknown(0) TCGA-BR-7723-01 7 99027390 99027390 T C ATP5J2-PTCD1 Missense_Mutation p.T261A 0.26 deleterious(0) probably_damaging(0.999) TCGA-BR-7723-01 8 133899355 133899355 T G TG Missense_Mutation p.F580V 0.11 deleterious(0.04) probably_damaging(0.962) TCGA-BR-7723-01 8 144733376 144733376 A G ZNF623 Missense_Mutation p.K445R 0.10 tolerated(0.3) probably_damaging(0.973) TCGA-BR-7723-01 8 145058498 145058498 G A PARP10 Silent p.S520S 0.28 TCGA-BR-7723-01 8 145059121 145059121 C G PARP10 Missense_Mutation p.S350T 0.14 tolerated(0.38) benign(0.002) TCGA-BR-7723-01 8 145722828 145722828 T A PPP1R16A Missense_Mutation p.L84Q 0.12 deleterious(0.01) probably_damaging(0.981) TCGA-BR-7723-01 8 19362744 19362744 T C CSGALNACT1 Missense_Mutation p.H201R 0.22 tolerated(0.8) benign(0.001) TCGA-BR-7723-01 8 26628025 26628025 T C ADRA1A Missense_Mutation p.R348G 0.18 tolerated(0.07) benign(0.118) TCGA-BR-7723-01 8 41399380 41399380 A C GINS4 Missense_Mutation p.Q179H 0.10 deleterious(0.02) possibly_damaging(0.881) TCGA-BR-7723-01 8 63973806 63973806 A C TTPA 3'UTR 0.14 TCGA-BR-7723-01 8 69358714 69358714 C T C8orf34 Intron 0.12 TCGA-BR-7723-01 8 95793379 95793379 T C DPY19L4 Missense_Mutation p.L567P 0.21 deleterious(0) probably_damaging(1) TCGA-BR-7723-01 9 114466182 114466182 T G C9orf84 Missense_Mutation p.E918D 0.42 deleterious(0) probably_damaging(0.997) TCGA-BR-7723-01 9 115806416 115806416 T - ZFP37 Frame_Shift_Del p.N161Ifs*24 0.36 TCGA-BR-7723-01 9 120475601 120475601 A C TLR4 Missense_Mutation p.T399P 0.09 tolerated(1) benign(0.016) TCGA-BR-7723-01 9 125391418 125391418 G T OR1B1 Missense_Mutation p.H133N 0.16 deleterious(0.01) benign(0.398) TCGA-BR-7723-01 9 137023147 137023147 G A WDR5 3'UTR 0.30 TCGA-BR-7723-01 9 140151447 140151447 G T NELFB Nonsense_Mutation p.E180* 0.29 TCGA-BR-7723-01 9 23762120 23762120 T C ELAVL2 Missense_Mutation p.K38R 0.16 tolerated(0.4) benign(0.004) TCGA-BR-7723-01 9 43625069 43625069 C T SPATA31A6 Missense_Mutation p.M1206I 0.24 tolerated(0.09) benign(0.098) TCGA-BR-7723-01 9 6328606 6328606 C A TPD52L3 Missense_Mutation p.A4D 0.12 deleterious(0.01) possibly_damaging(0.643) TCGA-BR-7723-01 X 104728346 104728346 G A IL1RAPL2 Missense_Mutation p.E247K 0.56 tolerated(0.14) benign(0.135) TCGA-BR-7723-01 X 124028194 124028194 T C TENM1 Silent p.K162K 0.51 TCGA-BR-7723-01 X 127185978 127185978 A C ACTRT1 Missense_Mutation p.L70V 0.31 deleterious(0.03) possibly_damaging(0.874) TCGA-BR-7723-01 X 153587984 153587984 C A FLNA Missense_Mutation p.G1337V 0.75 deleterious(0) possibly_damaging(0.523) TCGA-BR-7723-01 X 17819536 17819536 C T RAI2 Missense_Mutation p.G199R 0.52 deleterious(0) unknown(0) TCGA-BR-7723-01 X 26157600 26157600 A C MAGEB18 Missense_Mutation p.E166D 0.57 deleterious(0) probably_damaging(0.997) TCGA-BR-7851-01 10 101180424 101180424 C T GOT1 Missense_Mutation p.R86H 0.19 deleterious(0.02) benign(0.005) TCGA-BR-7851-01 10 103372106 103372106 C T FBXW4 Missense_Mutation p.R322H 0.20 deleterious(0) probably_damaging(0.998) TCGA-BR-7851-01 10 103569961 103569961 A T MGEA5 Missense_Mutation p.L154M 0.24 deleterious(0) probably_damaging(1) TCGA-BR-7851-01 10 103587076 103587076 C - KCNIP2 3'Flank 0.16 TCGA-BR-7851-01 10 103766310 103766310 C T C10orf76 Silent p.P345P 0.27 TCGA-BR-7851-01 10 103920580 103920582 AAG - NOLC1 In_Frame_Del p.K493del 0.43 TCGA-BR-7851-01 10 104122262 104122262 A G GBF1 Missense_Mutation p.T572A 0.08 deleterious(0.03) benign(0.358) TCGA-BR-7851-01 10 104230750 104230750 G A TMEM180 Missense_Mutation p.A194T 0.41 tolerated(0.29) benign(0.003) TCGA-BR-7851-01 10 104415893 104415893 A G TRIM8 Missense_Mutation p.R311G 0.04 deleterious(0) probably_damaging(0.994) TCGA-BR-7851-01 10 105174079 105174079 G A PDCD11 Missense_Mutation p.V455M 0.12 deleterious(0) possibly_damaging(0.795) TCGA-BR-7851-01 10 108466322 108466322 G A SORCS1 Missense_Mutation p.P405L 0.27 deleterious(0) probably_damaging(1) TCGA-BR-7851-01 10 111872584 111872584 G A ADD3 Missense_Mutation p.G82D 0.22 deleterious(0) probably_damaging(1) TCGA-BR-7851-01 10 1149661 1149661 C T WDR37 Silent p.G282G 0.20 TCGA-BR-7851-01 10 115612924 115612924 G A DCLRE1A Silent p.S6S 0.23 TCGA-BR-7851-01 10 116361697 116361697 G T ABLIM1 Missense_Mutation p.H90N 0.19 tolerated(0.28) benign(0.002) TCGA-BR-7851-01 10 116608484 116608484 C T FAM160B1 Silent p.D597D 0.29 TCGA-BR-7851-01 10 118434405 118434405 G A HSPA12A Missense_Mutation p.R639W 0.24 deleterious(0) probably_damaging(0.982) TCGA-BR-7851-01 10 119078467 119078467 G T PDZD8 Silent p.S338S 0.05 TCGA-BR-7851-01 10 121436479 121436479 G T BAG3 Missense_Mutation p.E471D 0.23 deleterious(0.04) unknown(0) TCGA-BR-7851-01 10 121590963 121590963 T C MCMBP 3'UTR 0.20 TCGA-BR-7851-01 10 12162909 12162909 T C DHTKD1 3'UTR 0.43 TCGA-BR-7851-01 10 122626116 122626116 C T WDR11 Nonsense_Mutation p.R344* 0.28 TCGA-BR-7851-01 10 123846182 123846182 A G TACC2 Silent p.S1389S 0.22 TCGA-BR-7851-01 10 129861404 129861404 C T PTPRE Missense_Mutation p.A228V 0.25 deleterious(0.04) possibly_damaging(0.652) TCGA-BR-7851-01 10 13264086 13264086 C T UCMA 3'UTR 0.11 TCGA-BR-7851-01 10 13276241 13276241 G A UCMA Silent p.A6A 0.30 TCGA-BR-7851-01 10 134188696 134188696 T - LRRC27 Frame_Shift_Del p.F516Lfs*22 0.25 TCGA-BR-7851-01 10 134942202 134942202 G - GPR123 Frame_Shift_Del p.Y291Tfs*6 0.26 TCGA-BR-7851-01 10 135084451 135084451 C A ADAM8 Missense_Mutation p.G500W 0.30 deleterious(0) probably_damaging(1) TCGA-BR-7851-01 10 135237144 135237144 C T SPRN Silent p.A14A 0.24 TCGA-BR-7851-01 10 14816291 14816291 G A FAM107B Silent p.H124H 0.34 TCGA-BR-7851-01 10 17146512 17146512 A G CUBN Silent p.C441C 0.17 TCGA-BR-7851-01 10 17275857 17275857 G A VIM Missense_Mutation p.R270H 0.46 deleterious(0.02) benign(0.056) TCGA-BR-7851-01 10 21106597 21106597 G A NEBL Missense_Mutation p.R694W 0.32 deleterious(0) possibly_damaging(0.606) TCGA-BR-7851-01 10 21108359 21108359 C T NEBL Silent p.L683L 0.33 TCGA-BR-7851-01 10 27499857 27499857 C A ACBD5 Nonsense_Mutation p.G364* 0.10 TCGA-BR-7851-01 10 28378678 28378678 C T MPP7 Missense_Mutation p.A349T 0.06 tolerated(0.34) probably_damaging(0.972) TCGA-BR-7851-01 10 31134324 31134324 C A ZNF438 Nonsense_Mutation p.G685* 0.28 TCGA-BR-7851-01 10 33000652 33000652 C T C10ORF68 Missense_Mutation p.R162C 0.25 tolerated(0.18) possibly_damaging(0.453) TCGA-BR-7851-01 10 35928685 35928685 C T FZD8 Missense_Mutation p.R558H 0.25 deleterious(0.02) probably_damaging(0.998) TCGA-BR-7851-01 10 429975 429975 G A DIP2C Missense_Mutation p.A623V 0.25 deleterious(0.03) possibly_damaging(0.633) TCGA-BR-7851-01 10 46122477 46122477 C T ZFAND4 Missense_Mutation p.R265H 0.20 tolerated(0.26) probably_damaging(0.994) TCGA-BR-7851-01 10 47087154 47087154 C T NPY4R Missense_Mutation p.S124L 0.19 deleterious(0) probably_damaging(0.993) TCGA-BR-7851-01 10 48429172 48429172 G A GDF10 Silent p.S238S 0.35 TCGA-BR-7851-01 10 50819158 50819158 C T SLC18A3 Silent p.I124I 0.31 TCGA-BR-7851-01 10 55973753 55973753 A G PCDH15 Silent p.L347L 0.24 TCGA-BR-7851-01 10 55973754 55973754 A C PCDH15 Missense_Mutation p.L347R 0.09 deleterious(0) probably_damaging(0.977) TCGA-BR-7851-01 10 56077174 56077174 G A PCDH15 Nonsense_Mutation p.R245* 0.30 TCGA-BR-7851-01 10 60273020 60273020 G A BICC1 Silent p.A39A 0.36 TCGA-BR-7851-01 10 63852118 63852118 A - ARID5B Frame_Shift_Del p.K967Nfs*15 0.22 TCGA-BR-7851-01 10 71007271 71007271 G A HKDC1 Missense_Mutation p.R396H 0.27 tolerated(0.15) benign(0.089) TCGA-BR-7851-01 10 71018587 71018587 G - HKDC1 Frame_Shift_Del p.G698Vfs*20 0.18 TCGA-BR-7851-01 10 71175863 71175863 C T TACR2 Missense_Mutation p.V73I 0.40 deleterious(0.02) benign(0.122) TCGA-BR-7851-01 10 71562436 71562436 C T COL13A1 Missense_Mutation p.T86M 0.24 tolerated_low_confidence(0.1) possibly_damaging(0.594) TCGA-BR-7851-01 10 72285747 72285747 G A PALD1 Missense_Mutation p.A14T 0.30 tolerated(0.18) possibly_damaging(0.682) TCGA-BR-7851-01 10 72293720 72293720 C - PALD1 Frame_Shift_Del p.P306Qfs*52 0.10 TCGA-BR-7851-01 10 72358862 72358862 G A PRF1 Silent p.N205N 0.24 TCGA-BR-7851-01 10 75005812 75005813 CA - DNAJC9 Frame_Shift_Del p.V148Afs*20 0.18 TCGA-BR-7851-01 10 78647231 78647231 C T KCNMA1 Silent p.P1151P 0.35 TCGA-BR-7851-01 10 78872132 78872132 A G KCNMA1 Missense_Mutation p.I318T 0.13 deleterious(0) probably_damaging(0.951) TCGA-BR-7851-01 10 79744971 79744971 C T POLR3A Missense_Mutation p.V1067M 0.42 deleterious(0) probably_damaging(1) TCGA-BR-7851-01 10 81272647 81272647 T C EIF5AL1 Missense_Mutation p.V81A 0.20 deleterious(0.02) possibly_damaging(0.681) TCGA-BR-7851-01 10 82036321 82036321 G A MAT1A Silent p.G193G 0.38 TCGA-BR-7851-01 10 82098164 82098164 A - DYDC1 Intron 0.50 TCGA-BR-7851-01 10 83635584 83635584 G T NRG3 Missense_Mutation p.R163L 0.08 tolerated(0.08) probably_damaging(0.979) TCGA-BR-7851-01 10 85972965 85972965 C T CDHR1 Missense_Mutation p.S634F 0.23 tolerated(0.68) benign(0.013) TCGA-BR-7851-01 10 89653808 89653808 G T PTEN Nonsense_Mutation p.G36* 0.23 TCGA-BR-7851-01 10 89653842 89653842 G T PTEN Missense_Mutation p.R47M 0.27 deleterious(0) probably_damaging(1) TCGA-BR-7851-01 10 91514406 91514406 T - KIF20B Frame_Shift_Del p.F1455Lfs*10 0.21 TCGA-BR-7851-01 10 92509172 92509172 G A HTR7 Missense_Mutation p.T240M 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-BR-7851-01 10 94834181 94834181 C T CYP26A1 Silent p.L102L 0.31 TCGA-BR-7851-01 10 95381766 95381766 G A PDE6C Silent p.T267T 0.29 TCGA-BR-7851-01 10 95721240 95721240 G A PIPSL RNA 0.31 TCGA-BR-7851-01 10 98292921 98292921 A - TM9SF3 Frame_Shift_Del p.F404Lfs*6 0.29 TCGA-BR-7851-01 10 99377012 99377012 A G MORN4 Silent p.N45N 0.24 TCGA-BR-7851-01 10 99379386 99379386 T C MORN4 Missense_Mutation p.T9A 0.26 tolerated(0.57) benign(0.217) TCGA-BR-7851-01 11 102487787 102487787 A G MMP20 Missense_Mutation p.Y44H 0.13 deleterious(0) probably_damaging(1) TCGA-BR-7851-01 11 102650323 102650323 G A MMP10 Missense_Mutation p.R87C 0.31 deleterious(0.01) benign(0.35) TCGA-BR-7851-01 11 105623740 105623740 T - GRIA4 Frame_Shift_Del p.F95Lfs*12 0.24 TCGA-BR-7851-01 11 107299920 107299920 C T CWF19L2 Silent p.T346T 0.23 TCGA-BR-7851-01 11 1078269 1078269 G - MUC2 Frame_Shift_Del p.V186Cfs*44 0.19 TCGA-BR-7851-01 11 10794128 10794130 GAA - CTR9 In_Frame_Del p.E838del 0.31 TCGA-BR-7851-01 11 108115583 108115583 C T ATM Missense_Mutation p.A244V 0.13 deleterious(0.01) benign(0.03) TCGA-BR-7851-01 11 10824633 10824633 C A EIF4G2 Missense_Mutation p.A314S 0.13 tolerated(0.06) benign(0.438) TCGA-BR-7851-01 11 113704197 113704197 G A USP28 Missense_Mutation p.P235L 0.23 deleterious(0) probably_damaging(1) TCGA-BR-7851-01 11 116661360 116661360 G A APOA5 Silent p.A195A 0.12 TCGA-BR-7851-01 11 116692251 116692251 G T APOA4 Missense_Mutation p.L175M 0.29 deleterious(0.02) probably_damaging(0.985) TCGA-BR-7851-01 11 116730138 116730138 G A SIK3 Missense_Mutation p.P764S 0.12 deleterious_low_confidence(0.03) benign(0.007) TCGA-BR-7851-01 11 117253626 117253626 G A CEP164 Silent p.A564A 0.21 TCGA-BR-7851-01 11 117265117 117265117 C T CEP164 Missense_Mutation p.R890C 0.50 deleterious(0) probably_damaging(0.972) TCGA-BR-7851-01 11 117267320 117267320 T G CEP164 Missense_Mutation p.L1091V 0.27 deleterious(0.01) benign(0.21) TCGA-BR-7851-01 11 117376306 117376306 C T DSCAML1 Missense_Mutation p.G702D 0.29 tolerated(0.05) probably_damaging(0.988) TCGA-BR-7851-01 11 119243494 119243494 G A USP2 Missense_Mutation p.R233C 0.37 deleterious(0) possibly_damaging(0.77) TCGA-BR-7851-01 11 120702624 120702624 G A GRIK4 Missense_Mutation p.R192H 0.30 deleterious(0.02) benign(0.151) TCGA-BR-7851-01 11 1217129 1217129 C - MUC5AC RNA 0.25 TCGA-BR-7851-01 11 122659932 122659932 C T UBASH3B Missense_Mutation p.T299M 0.25 deleterious(0.03) possibly_damaging(0.899) TCGA-BR-7851-01 11 123886626 123886626 A C OR10G4 Silent p.T115T 0.18 TCGA-BR-7851-01 11 124496847 124496847 C T TBRG1 Silent p.P213P 0.17 TCGA-BR-7851-01 11 124738967 124738967 G A ROBO3 Missense_Mutation p.V144M 0.56 deleterious(0) probably_damaging(1) TCGA-BR-7851-01 11 124757063 124757063 C A ROBO4 Missense_Mutation p.A749S 0.07 tolerated(0.59) benign(0.364) TCGA-BR-7851-01 11 124845023 124845023 G A CCDC15 Missense_Mutation p.R183Q 0.35 tolerated(0.72) benign(0.089) TCGA-BR-7851-01 11 125281699 125281699 C T PKNOX2 Nonsense_Mutation p.R292* 0.33 TCGA-BR-7851-01 11 126135202 126135202 G A SRPR Silent p.C424C 0.38 TCGA-BR-7851-01 11 1271392 1271392 G A MUC5B Missense_Mutation p.A4428T 0.28 benign(0.042) TCGA-BR-7851-01 11 129802014 129802014 T A PRDM10 Missense_Mutation p.S424C 0.14 tolerated(0.31) benign(0) TCGA-BR-7851-01 11 129802017 129802017 T C PRDM10 Missense_Mutation p.K423E 0.11 deleterious(0.02) benign(0.435) TCGA-BR-7851-01 11 133814114 133814114 C T IGSF9B Splice_Site p.X137_splice 0.27 TCGA-BR-7851-01 11 134063940 134063940 C T NCAPD3 Missense_Mutation p.A599T 0.21 deleterious(0.02) probably_damaging(0.994) TCGA-BR-7851-01 11 15247376 15247376 T C INSC Splice_Site p.X437_splice 0.50 TCGA-BR-7851-01 11 18266953 18266953 G A SAA2 Nonsense_Mutation p.R114* 0.31 TCGA-BR-7851-01 11 18636955 18636955 T C SPTY2D1 Missense_Mutation p.K289R 0.30 deleterious(0.03) benign(0.292) TCGA-BR-7851-01 11 18955405 18955405 A G MRGPRX1 Silent p.P309P 0.09 TCGA-BR-7851-01 11 19213981 19213981 G A CSRP3 Silent p.G5G 0.25 TCGA-BR-7851-01 11 19961240 19961240 C T NAV2 Silent p.A712A 0.20 TCGA-BR-7851-01 11 2154748 2154748 G A IGF2 Missense_Mutation p.P158L 0.39 deleterious(0) probably_damaging(0.918) TCGA-BR-7851-01 11 31349818 31349818 T - DCDC1 Frame_Shift_Del p.T4Qfs*18 0.21 TCGA-BR-7851-01 11 31484842 31484842 C T IMMP1L 5'UTR 0.26 TCGA-BR-7851-01 11 31805124 31805124 T C ELP4 3'UTR 0.40 TCGA-BR-7851-01 11 31824281 31824281 G T PAX6 Silent p.R38R 0.25 TCGA-BR-7851-01 11 33117910 33117910 T - CSTF3 Frame_Shift_Del p.K439Nfs*33 0.22 TCGA-BR-7851-01 11 33565470 33565470 G A KIAA1549L Silent p.V490V 0.26 TCGA-BR-7851-01 11 36250715 36250715 C T LDLRAD3 Missense_Mutation p.A269V 0.25 tolerated_low_confidence(0.07) benign(0.013) TCGA-BR-7851-01 11 36596057 36596057 G A RAG1 Silent p.S401S 0.35 TCGA-BR-7851-01 11 3720468 3720468 G A NUP98 Nonsense_Mutation p.R1285* 0.30 TCGA-BR-7851-01 11 376350 376350 C T B4GALNT4 Silent p.D432D 0.33 TCGA-BR-7851-01 11 44286624 44286624 G - ALX4 Frame_Shift_Del p.P339Lfs*12 0.18 TCGA-BR-7851-01 11 45949753 45949753 G A GYLTL1B Missense_Mutation p.A594T 0.33 deleterious(0.01) benign(0.327) TCGA-BR-7851-01 11 46406889 46406889 G A CHRM4 Silent p.L407L 0.33 TCGA-BR-7851-01 11 46694305 46694305 G T ATG13 3'Flank 0.24 TCGA-BR-7851-01 11 47814391 47814391 G A NUP160 Nonsense_Mutation p.R1133* 0.31 TCGA-BR-7851-01 11 48145173 48145173 C A PTPRJ Missense_Mutation p.P209T 0.13 deleterious(0.05) benign(0.323) TCGA-BR-7851-01 11 48328602 48328602 G A OR4S1 Missense_Mutation p.M276I 0.28 tolerated(1) benign(0.007) TCGA-BR-7851-01 11 55418833 55418833 T C OR4S2 Silent p.L152L 0.27 TCGA-BR-7851-01 11 55890450 55890450 T A OR8H3 Missense_Mutation p.I201N 0.26 deleterious(0) possibly_damaging(0.896) TCGA-BR-7851-01 11 56237709 56237709 T - OR5M3 Frame_Shift_Del p.T89Qfs*8 0.27 TCGA-BR-7851-01 11 57080198 57080198 C T TNKS1BP1 Missense_Mutation p.R655Q 0.12 tolerated(0.78) benign(0.001) TCGA-BR-7851-01 11 57578949 57578950 - A CTNND1 Frame_Shift_Ins p.S879Ifs*3 0.24 TCGA-BR-7851-01 11 57995829 57995829 G A OR10Q1 Silent p.C173C 0.31 TCGA-BR-7851-01 11 58385066 58385066 A T ZFP91 Missense_Mutation p.I534F 0.17 deleterious_low_confidence(0.01) benign(0.118) TCGA-BR-7851-01 11 5878010 5878011 - CT OR52E8 Frame_Shift_Ins p.V308Efs*3 0.28 TCGA-BR-7851-01 11 5878221 5878222 - T OR52E8 Frame_Shift_Ins p.A238Sfs*35 0.17 TCGA-BR-7851-01 11 59211158 59211158 G A OR5A1 Missense_Mutation p.G173R 0.21 deleterious(0.03) possibly_damaging(0.554) TCGA-BR-7851-01 11 59369267 59369267 T - OSBP Frame_Shift_Del p.K289Nfs*62 0.22 TCGA-BR-7851-01 11 59560902 59560902 G A STX3 Missense_Mutation p.R197Q 0.20 deleterious(0) probably_damaging(1) TCGA-BR-7851-01 11 60230571 60230571 T C MS4A1 Missense_Mutation p.Y86H 0.30 deleterious(0) probably_damaging(1) TCGA-BR-7851-01 11 60557821 60557821 G T MS4A10 Missense_Mutation p.A5S 0.35 tolerated(0.13) benign(0.031) TCGA-BR-7851-01 11 60711286 60711286 G A SLC15A3 Silent p.L291L 0.38 TCGA-BR-7851-01 11 60777126 60777127 - GT CD6 Frame_Shift_Ins p.D291Vfs*94 0.25 TCGA-BR-7851-01 11 61079513 61079513 C T DDB1 Missense_Mutation p.D705N 0.26 deleterious(0.04) probably_damaging(1) TCGA-BR-7851-01 11 61539203 61539203 G A MYRF Silent p.P324P 0.19 TCGA-BR-7851-01 11 61541548 61541548 G A MYRF Missense_Mutation p.G409S 0.43 deleterious(0.03) probably_damaging(0.994) TCGA-BR-7851-01 11 61672092 61672092 C T RAB3IL1 Silent p.T275T 0.28 TCGA-BR-7851-01 11 62376578 62376578 C T EML3 Missense_Mutation p.R262H 0.26 deleterious(0) probably_damaging(1) TCGA-BR-7851-01 11 62557411 62557411 C T TMEM179B Silent p.V184V 0.27 TCGA-BR-7851-01 11 62569689 62569689 A G NXF1 Missense_Mutation p.M138T 0.39 tolerated(0.15) benign(0) TCGA-BR-7851-01 11 63764868 63764868 G A OTUB1 Silent p.A222A 0.32 TCGA-BR-7851-01 11 63978892 63978892 A C FERMT3 Silent p.S220S 0.21 TCGA-BR-7851-01 11 64137189 64137189 G A RPS6KA4 Missense_Mutation p.D541N 0.16 tolerated(0.18) benign(0.009) TCGA-BR-7851-01 11 64527250 64527250 C T PYGM Missense_Mutation p.V41I 0.31 tolerated(0.99) probably_damaging(0.959) TCGA-BR-7851-01 11 64854021 64854021 G A ZFPL1 Missense_Mutation p.A117T 0.27 tolerated(0.34) benign(0.002) TCGA-BR-7851-01 11 65367021 65367021 C T MAP3K11 Missense_Mutation p.A684T 0.29 tolerated_low_confidence(0.62) benign(0) TCGA-BR-7851-01 11 65623611 65623611 C T CFL1 Missense_Mutation p.V36M 0.22 deleterious(0.02) possibly_damaging(0.887) TCGA-BR-7851-01 11 65651890 65651890 G A FIBP Missense_Mutation p.A333V 0.23 tolerated(0.27) benign(0.102) TCGA-BR-7851-01 11 65732567 65732567 G T SART1 Silent p.A144A 0.30 TCGA-BR-7851-01 11 66084234 66084234 G A CD248 Missense_Mutation p.R89W 0.58 deleterious(0) probably_damaging(1) TCGA-BR-7851-01 11 66327746 66327746 G A CTSF 3'Flank 0.39 TCGA-BR-7851-01 11 67168671 67168671 C T PPP1CA Missense_Mutation p.V30M 0.23 deleterious_low_confidence(0.02) benign(0.117) TCGA-BR-7851-01 11 67177171 67177171 G T TBC1D10C Missense_Mutation p.E429D 0.14 deleterious(0.04) benign(0.171) TCGA-BR-7851-01 11 67223133 67223133 C T CABP4 Missense_Mutation p.P80L 0.43 tolerated(0.22) benign(0.028) TCGA-BR-7851-01 11 67808841 67808841 G A TCIRG1 Missense_Mutation p.V35M 0.27 deleterious(0) probably_damaging(0.95) TCGA-BR-7851-01 11 67926307 67926307 G A SUV420H1 Silent p.A502A 0.43 TCGA-BR-7851-01 11 68191056 68191056 G A LRP5 Missense_Mutation p.E1043K 0.39 tolerated(0.15) benign(0.161) TCGA-BR-7851-01 11 70331662 70331662 G - SHANK2 Frame_Shift_Del p.P1580Rfs*49 0.26 TCGA-BR-7851-01 11 71903171 71903171 C T FOLR1 Intron 0.28 TCGA-BR-7851-01 11 72004579 72004579 C A CLPB Silent p.T652T 0.21 TCGA-BR-7851-01 11 72946051 72946051 G A P2RY2 Missense_Mutation p.A283T 0.19 tolerated(0.09) benign(0.273) TCGA-BR-7851-01 11 73007984 73007984 C T P2RY6 Missense_Mutation p.R141C 0.23 deleterious(0.02) benign(0.049) TCGA-BR-7851-01 11 73662142 73662142 G A DNAJB13 Missense_Mutation p.G10R 0.26 deleterious(0.01) benign(0.038) TCGA-BR-7851-01 11 75562938 75562938 G A UVRAG Missense_Mutation p.R43Q 0.30 deleterious(0) probably_damaging(0.999) TCGA-BR-7851-01 11 76944092 76944092 A G GDPD4 Missense_Mutation p.L456P 0.26 deleterious(0) probably_damaging(0.978) TCGA-BR-7851-01 11 77934561 77934561 T C GAB2 Silent p.S488S 0.18 TCGA-BR-7851-01 11 791923 791923 G - SLC25A22 Frame_Shift_Del p.Q322Rfs*52 0.44 TCGA-BR-7851-01 11 8103045 8103045 G A TUB Intron 0.36 TCGA-BR-7851-01 11 82561043 82561043 C T PRCP Missense_Mutation p.V243I 0.31 tolerated(0.06) possibly_damaging(0.771) TCGA-BR-7851-01 11 82644690 82644690 A G C11orf82 Silent p.P770P 0.36 TCGA-BR-7851-01 11 83770433 83770433 C T DLG2 Missense_Mutation p.V282I 0.22 deleterious(0.02) probably_damaging(0.939) TCGA-BR-7851-01 11 85396668 85396668 A G CCDC89 Missense_Mutation p.L169P 0.25 deleterious(0) probably_damaging(0.972) TCGA-BR-7851-01 11 88583111 88583111 G A GRM5 Missense_Mutation p.R292C 0.14 deleterious(0) probably_damaging(0.998) TCGA-BR-7851-01 11 92533683 92533683 G A FAT3 Missense_Mutation p.V2502I 0.31 benign(0.327) TCGA-BR-7851-01 11 92703084 92703084 G A MTNR1B Missense_Mutation p.V65M 0.31 deleterious(0) probably_damaging(0.978) TCGA-BR-7851-01 11 93912987 93912987 C T PANX1 Silent p.N255N 0.24 TCGA-BR-7851-01 11 94231635 94231635 A G ANKRD49 Silent p.T219T 0.21 TCGA-BR-7851-01 11 94800992 94800992 C T SRSF8 Missense_Mutation p.A201V 0.20 deleterious_low_confidence(0) unknown(0) TCGA-BR-7851-01 12 101739426 101739426 A G UTP20 Missense_Mutation p.Y1567C 0.22 tolerated_low_confidence(0.2) benign(0.001) TCGA-BR-7851-01 12 102164318 102164318 C T GNPTAB Missense_Mutation p.E327K 0.36 deleterious(0) probably_damaging(0.996) TCGA-BR-7851-01 12 103352324 103352324 G A ASCL1 Missense_Mutation p.R101H 0.44 deleterious(0) probably_damaging(0.997) TCGA-BR-7851-01 12 103696040 103696040 G A C12orf42 Missense_Mutation p.A310V 0.22 tolerated(0.09) possibly_damaging(0.698) TCGA-BR-7851-01 12 104078853 104078853 C T STAB2 Silent p.N996N 0.26 TCGA-BR-7851-01 12 107208552 107208552 C T RIC8B Missense_Mutation p.R71C 0.25 deleterious(0) probably_damaging(1) TCGA-BR-7851-01 12 109278931 109278931 G A DAO Missense_Mutation p.G50D 0.34 deleterious(0) probably_damaging(1) TCGA-BR-7851-01 12 109723308 109723308 G A FOXN4 Silent p.P234P 0.39 TCGA-BR-7851-01 12 110207106 110207106 G A FAM222A 3'UTR 0.47 TCGA-BR-7851-01 12 110811943 110811943 G A ANAPC7 3'UTR 0.33 TCGA-BR-7851-01 12 111356964 111356964 C T MYL2 Missense_Mutation p.A13T 0.39 tolerated(0.1) unknown(0) TCGA-BR-7851-01 12 111785560 111785560 A G CUX2 Missense_Mutation p.I1298V 0.29 tolerated_low_confidence(0.63) benign(0.005) TCGA-BR-7851-01 12 111800988 111800988 G A FAM109A Missense_Mutation p.R95C 0.24 tolerated(0.09) benign(0.177) TCGA-BR-7851-01 12 11183704 11183704 A G TAS2R31 Silent p.S77S 0.08 TCGA-BR-7851-01 12 112485518 112485518 G A NAA25 Nonsense_Mutation p.R653* 0.31 TCGA-BR-7851-01 12 113515382 113515382 C T DTX1 Missense_Mutation p.P138L 0.21 deleterious(0) benign(0.177) TCGA-BR-7851-01 12 113835064 113835064 C - SDS Frame_Shift_Del p.D187Tfs*39 0.21 TCGA-BR-7851-01 12 11461556 11461556 C A PRB4 Nonsense_Mutation p.E121* 0.17 TCGA-BR-7851-01 12 11461619 11461619 C A PRB4 Nonsense_Mutation p.E100* 0.10 TCGA-BR-7851-01 12 117013723 117013723 C T MAP1LC3B2 5'UTR 0.21 TCGA-BR-7851-01 12 117628293 117628293 C T FBXO21 5'Flank 0.46 TCGA-BR-7851-01 12 118199032 118199032 G A KSR2 Missense_Mutation p.A257V 0.37 tolerated(0.6) benign(0) TCGA-BR-7851-01 12 120172994 120172994 G A CIT Nonsense_Mutation p.R1043* 0.37 TCGA-BR-7851-01 12 120621397 120621397 C T GCN1L1 Missense_Mutation p.R134Q 0.26 benign(0.017) TCGA-BR-7851-01 12 121416638 121416639 AA - HNF1A Frame_Shift_Del p.K23Rfs*9 0.33 TCGA-BR-7851-01 12 122773037 122773037 T - CLIP1 Frame_Shift_Del p.R1216Efs*6 0.22 TCGA-BR-7851-01 12 122825691 122825691 G A CLIP1 Missense_Mutation p.A687V 0.31 tolerated(0.28) probably_damaging(0.989) TCGA-BR-7851-01 12 123343608 123343608 G A HIP1R Missense_Mutation p.R720H 0.40 deleterious(0.03) possibly_damaging(0.701) TCGA-BR-7851-01 12 12339973 12339973 C T LRP6 Missense_Mutation p.S243N 0.25 tolerated(0.37) benign(0) TCGA-BR-7851-01 12 123485614 123485614 C T PITPNM2 Silent p.P380P 0.24 TCGA-BR-7851-01 12 123651237 123651237 G A MPHOSPH9 Silent p.N700N 0.29 TCGA-BR-7851-01 12 124229435 124229435 C A ATP6V0A2 Missense_Mutation p.S507R 0.15 tolerated(0.16) benign(0.007) TCGA-BR-7851-01 12 124235765 124235765 G A ATP6V0A2 Missense_Mutation p.G682R 0.25 tolerated(0.5) benign(0.14) TCGA-BR-7851-01 12 124411254 124411254 T C DNAH10 Missense_Mutation p.F3880L 0.21 probably_damaging(0.914) TCGA-BR-7851-01 12 124846815 124846816 - G NCOR2 Frame_Shift_Ins p.R986Pfs*76 0.33 TCGA-BR-7851-01 12 125298818 125298818 A G SCARB1 Missense_Mutation p.L187P 0.09 deleterious(0) probably_damaging(0.967) TCGA-BR-7851-01 12 130648820 130648820 G A FZD10 Missense_Mutation p.G445R 0.24 deleterious(0) probably_damaging(1) TCGA-BR-7851-01 12 131488738 131488738 C T GPR133 Silent p.S384S 0.20 TCGA-BR-7851-01 12 132405998 132405998 C T ULK1 3'UTR 0.35 TCGA-BR-7851-01 12 13716215 13716215 C T GRIN2B Silent p.P1319P 0.07 TCGA-BR-7851-01 12 13716527 13716527 G A GRIN2B Silent p.C1215C 0.32 TCGA-BR-7851-01 12 14664194 14664194 C A PLBD1 Nonsense_Mutation p.G396* 0.21 TCGA-BR-7851-01 12 18435062 18435062 A G PIK3C2G Missense_Mutation p.E16G 0.60 deleterious_low_confidence(0) possibly_damaging(0.735) TCGA-BR-7851-01 12 20766472 20766472 C T PDE3A Silent p.N369N 0.24 TCGA-BR-7851-01 12 2800302 2800302 C T CACNA1C Silent p.R2166R 0.24 TCGA-BR-7851-01 12 2939904 2939904 T C NRIP2 Silent p.T155T 0.35 TCGA-BR-7851-01 12 29592284 29592284 T C OVCH1 Missense_Mutation p.M1081V 0.40 tolerated_low_confidence(0.17) benign(0.005) TCGA-BR-7851-01 12 29624856 29624856 C - OVCH1 Frame_Shift_Del p.E579Kfs*14 0.24 TCGA-BR-7851-01 12 31250882 31250882 T C DDX11 Missense_Mutation p.V609A 0.28 deleterious(0) possibly_damaging(0.849) TCGA-BR-7851-01 12 34179403 34179404 - T ALG10 Frame_Shift_Ins p.V328Cfs*18 0.29 TCGA-BR-7851-01 12 368996 368996 G T SLC6A13 Intron 0.08 TCGA-BR-7851-01 12 39087578 39087578 T C CPNE8 Missense_Mutation p.M342V 0.43 tolerated(0.2) benign(0.005) TCGA-BR-7851-01 12 39695397 39695397 C A KIF21A Missense_Mutation p.G1606C 0.11 deleterious(0) probably_damaging(0.995) TCGA-BR-7851-01 12 432818 432818 G A KDM5A Missense_Mutation p.L700F 0.25 deleterious(0) probably_damaging(0.99) TCGA-BR-7851-01 12 44130313 44130313 G A PUS7L Silent p.H532H 0.30 TCGA-BR-7851-01 12 46327972 46327972 A G SCAF11 Missense_Mutation p.Y207H 0.28 tolerated(0.55) benign(0.002) TCGA-BR-7851-01 12 47629390 47629390 C T PCED1B Missense_Mutation p.R182W 0.23 tolerated(0.09) benign(0.005) TCGA-BR-7851-01 12 49086878 49086881 TGTC - CCNT1 Frame_Shift_Del p.D706Nfs*45 0.28 TCGA-BR-7851-01 12 4919519 4919519 C T KCNA6 Silent p.G104G 0.33 TCGA-BR-7851-01 12 49298120 49298120 A G CCDC65 Translation_Start_Site p.M1? 0.19 deleterious(0) probably_damaging(0.961) TCGA-BR-7851-01 12 50188791 50188791 C T NCKAP5L Missense_Mutation p.R951Q 0.46 deleterious(0.05) probably_damaging(0.942) TCGA-BR-7851-01 12 50344854 50344854 G A AQP2 Missense_Mutation p.V81I 0.32 tolerated(1) benign(0.004) TCGA-BR-7851-01 12 51457853 51457853 C T CSRNP2 Silent p.T436T 0.23 TCGA-BR-7851-01 12 51634661 51634661 C T DAZAP2 Missense_Mutation p.R47C 0.31 tolerated_low_confidence(0.05) benign(0.011) TCGA-BR-7851-01 12 51685740 51685740 C T BIN2 Missense_Mutation p.A384T 0.17 tolerated_low_confidence(0.42) benign(0.055) TCGA-BR-7851-01 12 52284398 52284398 G A ANKRD33 Missense_Mutation p.R223Q 0.36 tolerated(0.09) benign(0.323) TCGA-BR-7851-01 12 52467515 52467515 G A C12orf44 Silent p.T27T 0.09 TCGA-BR-7851-01 12 52938304 52938304 G A KRT71 3'UTR 0.30 TCGA-BR-7851-01 12 53189822 53189822 C T KRT3 Missense_Mutation p.S2N 0.17 tolerated(0.21) unknown(0) TCGA-BR-7851-01 12 53412624 53412624 C T EIF4B Missense_Mutation p.A65V 0.18 tolerated(0.08) possibly_damaging(0.499) TCGA-BR-7851-01 12 53564239 53564239 G A CSAD Silent p.T232T 0.29 TCGA-BR-7851-01 12 53776653 53776653 G A SP1 Missense_Mutation p.A308T 0.09 tolerated(0.55) possibly_damaging(0.811) TCGA-BR-7851-01 12 53879249 53879249 T C MAP3K12 Missense_Mutation p.T278A 0.04 tolerated(0.12) benign(0.084) TCGA-BR-7851-01 12 53880257 53880257 G A MAP3K12 Nonsense_Mutation p.R199* 0.27 TCGA-BR-7851-01 12 54674573 54674573 C T HNRNPA1 5'UTR 0.08 TCGA-BR-7851-01 12 54966477 54966477 C T PDE1B Silent p.A229A 0.27 TCGA-BR-7851-01 12 55714989 55714989 G A OR6C1 Silent p.A202A 0.26 TCGA-BR-7851-01 12 5603709 5603709 C - NTF3 Frame_Shift_Del p.L125Wfs*48 0.30 TCGA-BR-7851-01 12 56091513 56091513 C T ITGA7 Missense_Mutation p.V463M 0.27 deleterious(0) probably_damaging(0.986) TCGA-BR-7851-01 12 56215796 56215796 G A DNAJC14 Missense_Mutation p.R692W 0.35 deleterious_low_confidence(0) possibly_damaging(0.826) TCGA-BR-7851-01 12 56552245 56552245 G T MYL6 Intron 0.22 TCGA-BR-7851-01 12 56755798 56755798 G T APOF Silent p.S64S 0.06 TCGA-BR-7851-01 12 57567081 57567081 G T LRP1 Missense_Mutation p.E1098D 0.06 benign(0.005) TCGA-BR-7851-01 12 57962772 57962772 C T KIF5A Silent p.A247A 0.18 TCGA-BR-7851-01 12 58008142 58008142 C T ARHGEF25 Silent p.L268L 0.26 TCGA-BR-7851-01 12 58201166 58201166 G A AVIL Missense_Mutation p.T480M 0.33 deleterious(0.02) benign(0.017) TCGA-BR-7851-01 12 60168466 60168466 C T SLC16A7 Silent p.P130P 0.31 TCGA-BR-7851-01 12 6128559 6128559 C T VWF Missense_Mutation p.R1342H 0.40 deleterious(0.04) possibly_damaging(0.842) TCGA-BR-7851-01 12 65564319 65564319 G T LEMD3 Nonsense_Mutation p.G315* 0.12 TCGA-BR-7851-01 12 66638373 66638373 G A IRAK3 Missense_Mutation p.S332N 0.29 tolerated(0.22) benign(0.023) TCGA-BR-7851-01 12 66704320 66704320 G T HELB Missense_Mutation p.A538S 0.30 deleterious(0) probably_damaging(1) TCGA-BR-7851-01 12 66742824 66742824 G A GRIP1 Missense_Mutation p.T1069I 0.05 tolerated_low_confidence(0.38) benign(0.001) TCGA-BR-7851-01 12 68051937 68051937 C T DYRK2 Missense_Mutation p.T417M 0.22 deleterious(0.01) probably_damaging(0.987) TCGA-BR-7851-01 12 6909523 6909523 G - CD4 Frame_Shift_Del p.D35Ifs*5 0.10 TCGA-BR-7851-01 12 6958314 6958314 C A CDCA3 Nonsense_Mutation p.G234* 0.15 TCGA-BR-7851-01 12 6975272 6975273 - G USP5 3'UTR 0.30 TCGA-BR-7851-01 12 72372756 72372756 C T TPH2 Missense_Mutation p.P277L 0.25 deleterious(0) probably_damaging(1) TCGA-BR-7851-01 12 7287981 7287981 C T CLSTN3 Missense_Mutation p.R148W 0.20 deleterious(0.02) possibly_damaging(0.861) TCGA-BR-7851-01 12 77444495 77444495 G A E2F7 Silent p.D133D 0.29 TCGA-BR-7851-01 12 81503375 81503375 C T ACSS3 Silent p.A116A 0.28 TCGA-BR-7851-01 12 82752576 82752576 C T METTL25 Missense_Mutation p.P78S 0.41 tolerated(0.22) benign(0.11) TCGA-BR-7851-01 12 85450750 85450750 T A LRRIQ1 Missense_Mutation p.C727S 0.20 tolerated(0.42) benign(0.003) TCGA-BR-7851-01 12 85695137 85695137 G A ALX1 Missense_Mutation p.A289T 0.24 tolerated(0.19) benign(0.007) TCGA-BR-7851-01 12 88910256 88910256 T - KITLG Frame_Shift_Del p.K125Nfs*31 0.30 TCGA-BR-7851-01 12 9251308 9251308 G A A2M Silent p.H582H 0.23 TCGA-BR-7851-01 12 95396516 95396516 A - NDUFA12 Frame_Shift_Del p.F56Lfs*13 0.10 TCGA-BR-7851-01 12 95927797 95927798 - A USP44 Frame_Shift_Ins p.C79Lfs*5 0.29 TCGA-BR-7851-01 12 96259866 96259866 T - SNRPF 3'UTR 0.33 TCGA-BR-7851-01 12 96412600 96412600 A T LTA4H Missense_Mutation p.S265T 0.16 deleterious(0.03) benign(0.37) TCGA-BR-7851-01 13 102029117 102029117 C T NALCN Missense_Mutation p.G193E 0.30 deleterious(0) probably_damaging(0.993) TCGA-BR-7851-01 13 102047697 102047697 C T NALCN Missense_Mutation p.R43H 0.23 deleterious(0) probably_damaging(0.985) TCGA-BR-7851-01 13 103528225 103528225 G A ERCC5 Missense_Mutation p.R1178H 0.30 tolerated(0.13) unknown(0) TCGA-BR-7851-01 13 110839513 110839513 G A COL4A1 Missense_Mutation p.P567L 0.26 benign(0.013) TCGA-BR-7851-01 13 110864792 110864792 G - COL4A1 Frame_Shift_Del p.P120Qfs*36 0.19 TCGA-BR-7851-01 13 111289536 111289536 C T CARKD Missense_Mutation p.S278L 0.45 deleterious(0.01) probably_damaging(0.983) TCGA-BR-7851-01 13 113730324 113730324 A G MCF2L Silent p.Q451Q 0.11 TCGA-BR-7851-01 13 113793763 113793763 G A F10 Missense_Mutation p.E117K 0.34 tolerated(0.17) probably_damaging(0.97) TCGA-BR-7851-01 13 113973833 113973833 G A LAMP1 Silent p.A204A 0.20 TCGA-BR-7851-01 13 20426142 20426142 A T ZMYM5 Missense_Mutation p.V60D 0.18 deleterious_low_confidence(0.04) possibly_damaging(0.904) TCGA-BR-7851-01 13 20608488 20608488 A C ZMYM2 Missense_Mutation p.K688T 0.23 deleterious(0.02) probably_damaging(0.995) TCGA-BR-7851-01 13 21429838 21429838 T C XPO4 Silent p.L128L 0.33 TCGA-BR-7851-01 13 21557370 21557370 G A LATS2 Silent p.Y825Y 0.24 TCGA-BR-7851-01 13 21557772 21557772 G A LATS2 Silent p.H691H 0.23 TCGA-BR-7851-01 13 22275388 22275388 G A FGF9 Silent p.T147T 0.43 TCGA-BR-7851-01 13 23904264 23904264 G A SACS 3'UTR 0.31 TCGA-BR-7851-01 13 25363909 25363912 AAGT - RNF17 Splice_Site p.X312_splice 0.22 TCGA-BR-7851-01 13 25424504 25424504 A G RNF17 Missense_Mutation p.T1043A 0.10 tolerated(0.05) possibly_damaging(0.899) TCGA-BR-7851-01 13 25463471 25463471 T - CENPJ Frame_Shift_Del p.N1095Ifs*21 0.28 TCGA-BR-7851-01 13 27333685 27333685 C T GPR12 Missense_Mutation p.G94S 0.24 deleterious(0.01) probably_damaging(1) TCGA-BR-7851-01 13 28367781 28367781 G A GSX1 Missense_Mutation p.R164H 0.34 deleterious(0) probably_damaging(1) TCGA-BR-7851-01 13 31897940 31897940 T C B3GALTL Missense_Mutation p.C413R 0.32 deleterious(0) probably_damaging(1) TCGA-BR-7851-01 13 36699914 36699914 C A DCLK1 Missense_Mutation p.D121Y 0.12 deleterious(0) unknown(0) TCGA-BR-7851-01 13 38171342 38171342 T - POSTN Frame_Shift_Del p.K66Sfs*19 0.27 TCGA-BR-7851-01 13 41645702 41645703 - A WBP4 Frame_Shift_Ins p.T163Dfs*13 0.18 TCGA-BR-7851-01 13 42784857 42784857 G A DGKH Silent p.S990S 0.27 TCGA-BR-7851-01 13 42874000 42874000 T C AKAP11 Missense_Mutation p.L373P 0.27 tolerated(0.38) benign(0.002) TCGA-BR-7851-01 13 46425658 46425658 C T SIAH3 Missense_Mutation p.C36Y 0.07 deleterious_low_confidence(0) possibly_damaging(0.692) TCGA-BR-7851-01 13 46577381 46577381 T - ZC3H13 Frame_Shift_Del p.K279Nfs*8 0.22 TCGA-BR-7851-01 13 49795007 49795007 C T MLNR Silent p.G178G 0.42 TCGA-BR-7851-01 13 51519632 51519632 T - RNASEH2B Frame_Shift_Del p.F195Sfs*21 0.25 TCGA-BR-7851-01 13 58208617 58208617 G A PCDH17 Missense_Mutation p.R646H 0.27 deleterious(0) probably_damaging(0.983) TCGA-BR-7851-01 13 77720321 77720321 C T MYCBP2 Missense_Mutation p.R2350H 0.16 probably_damaging(0.955) TCGA-BR-7851-01 13 88327910 88327910 C T SLITRK5 Silent p.S89S 0.21 TCGA-BR-7851-01 13 92346050 92346050 T C GPC5 Missense_Mutation p.I312T 0.24 deleterious(0) benign(0.426) TCGA-BR-7851-01 13 93879765 93879765 T C GPC6 Missense_Mutation p.L19P 0.24 tolerated(0.21) probably_damaging(0.928) TCGA-BR-7851-01 13 97485156 97485156 T C HS6ST3 Missense_Mutation p.S374P 0.27 tolerated(0.14) probably_damaging(0.94) TCGA-BR-7851-01 14 100182183 100182183 C T CYP46A1 Missense_Mutation p.R244W 0.28 deleterious(0) probably_damaging(0.976) TCGA-BR-7851-01 14 102368058 102368058 G T PPP2R5C Silent p.V316V 0.20 TCGA-BR-7851-01 14 102452268 102452268 G A DYNC1H1 Missense_Mutation p.R569Q 0.24 probably_damaging(0.972) TCGA-BR-7851-01 14 102675164 102675164 C T WDR20 Silent p.G250G 0.33 TCGA-BR-7851-01 14 102915976 102915976 C T TECPR2 Missense_Mutation p.T1029M 0.36 deleterious(0) probably_damaging(0.991) TCGA-BR-7851-01 14 103404710 103404710 G A CDC42BPB Silent p.P1622P 0.31 TCGA-BR-7851-01 14 103410756 103410756 T C CDC42BPB Missense_Mutation p.I1294V 0.15 tolerated(1) benign(0.001) TCGA-BR-7851-01 14 103566851 103566851 C T EXOC3L4 Missense_Mutation p.H99Y 0.32 deleterious(0.04) benign(0.242) TCGA-BR-7851-01 14 104139470 104139470 C T KLC1 Silent p.Y369Y 0.14 TCGA-BR-7851-01 14 104194188 104194188 T C ZFYVE21 Missense_Mutation p.C99R 0.08 deleterious(0) probably_damaging(0.995) TCGA-BR-7851-01 14 105413904 105413904 C T AHNAK2 Silent p.A2628A 0.30 TCGA-BR-7851-01 14 105415580 105415580 G A AHNAK2 Missense_Mutation p.H2070Y 0.06 benign(0.446) TCGA-BR-7851-01 14 105416463 105416463 C T AHNAK2 Silent p.A1775A 0.31 TCGA-BR-7851-01 14 105452904 105452906 CTC - C14orf79 In_Frame_Del p.L47del 0.22 TCGA-BR-7851-01 14 106092297 106092297 G A IGHG4 Missense_Mutation p.P36L 0.31 deleterious(0.01) possibly_damaging(0.819) TCGA-BR-7851-01 14 106845443 106845443 C T IGHV3-35 Silent p.T77T 0.04 TCGA-BR-7851-01 14 20665777 20665777 G A OR11G2 Missense_Mutation p.A95T 0.32 tolerated(1) benign(0) TCGA-BR-7851-01 14 20763608 20763608 C T TTC5 Silent p.G307G 0.14 TCGA-BR-7851-01 14 20779625 20779625 C T CCNB1IP1 3'UTR 0.40 TCGA-BR-7851-01 14 20864060 20864060 G T TEP1 Missense_Mutation p.H570N 0.28 tolerated(0.07) probably_damaging(0.993) TCGA-BR-7851-01 14 20916116 20916116 C T OSGEP Missense_Mutation p.R247Q 0.35 deleterious(0) probably_damaging(0.984) TCGA-BR-7851-01 14 23344373 23344373 G - LRP10 Frame_Shift_Del p.G110Afs*29 0.11 TCGA-BR-7851-01 14 23564354 23564354 C A ACIN1 Missense_Mutation p.A48S 0.27 benign(0.24) TCGA-BR-7851-01 14 23854244 23854244 T C MYH6 Missense_Mutation p.S1724G 0.31 tolerated(0.09) benign(0.019) TCGA-BR-7851-01 14 23869968 23869968 G A MYH6 Missense_Mutation p.R454C 0.26 deleterious(0) probably_damaging(0.985) TCGA-BR-7851-01 14 23889166 23889166 T G MYH7 Missense_Mutation p.E1205A 0.17 deleterious(0.02) possibly_damaging(0.721) TCGA-BR-7851-01 14 24909407 24909407 C T SDR39U1 Missense_Mutation p.R255Q 0.33 tolerated(0.49) benign(0.005) TCGA-BR-7851-01 14 29237213 29237213 C T FOXG1 Missense_Mutation p.P243L 0.31 deleterious(0) probably_damaging(1) TCGA-BR-7851-01 14 31376175 31376175 T - STRN3 Frame_Shift_Del p.N599Ifs*42 0.20 TCGA-BR-7851-01 14 32562545 32562545 T - ARHGAP5 Frame_Shift_Del p.F892Lfs*9 0.21 TCGA-BR-7851-01 14 33292184 33292184 T C AKAP6 Missense_Mutation p.L1722P 0.34 deleterious(0.04) probably_damaging(0.999) TCGA-BR-7851-01 14 38296430 38296430 T C TTC6 Silent p.N1719N 0.22 TCGA-BR-7851-01 14 39819358 39819358 T - CTAGE5 Frame_Shift_Del p.F775Sfs*17 0.25 TCGA-BR-7851-01 14 47120800 47120800 G A RPL10L Missense_Mutation p.P47L 0.35 deleterious(0.02) possibly_damaging(0.479) TCGA-BR-7851-01 14 50585161 50585161 A T SOS2 Silent p.P1300P 0.27 TCGA-BR-7851-01 14 50779624 50779624 C T ATP5S 5'UTR 0.30 TCGA-BR-7851-01 14 51107479 51107479 T G SAV1 Silent p.R313R 0.20 TCGA-BR-7851-01 14 51259462 51259462 G A NIN Missense_Mutation p.P135S 0.07 tolerated(0.5) benign(0.023) TCGA-BR-7851-01 14 52186867 52186867 G A FRMD6 Silent p.A373A 0.29 TCGA-BR-7851-01 14 52735331 52735331 C T PTGDR Silent p.L267L 0.28 TCGA-BR-7851-01 14 53513450 53513480 AATCAGTTTTAGGCCATTCATGTCCTTCAAG TCAGTTTTAGGCCATTCATGTCCTTCA DDHD1 3'UTR 0.14 TCGA-BR-7851-01 14 58678052 58678052 C T ACTR10 Silent p.L129L 0.25 TCGA-BR-7851-01 14 60976534 60976534 C T SIX6 Missense_Mutation p.R140W 0.29 deleterious(0) probably_damaging(1) TCGA-BR-7851-01 14 62213825 62213825 T - HIF1A 3'UTR 0.27 TCGA-BR-7851-01 14 70634521 70634521 C T SLC8A3 Missense_Mutation p.A207T 0.17 deleterious(0.02) benign(0.232) TCGA-BR-7851-01 14 70713476 70713476 T - ADAM21P1 RNA 0.12 TCGA-BR-7851-01 14 70926261 70926261 T - ADAM21 Frame_Shift_Del p.L684Cfs*3 0.26 TCGA-BR-7851-01 14 71576248 71576248 G A PCNX Missense_Mutation p.R2275Q 0.19 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-BR-7851-01 14 72190562 72190562 C T SIPA1L1 Silent p.P1490P 0.22 TCGA-BR-7851-01 14 73959854 73959854 T C HEATR4 Intron 0.18 TCGA-BR-7851-01 14 74973960 74973960 C T LTBP2 Missense_Mutation p.E1277K 0.23 tolerated(0.1) probably_damaging(0.999) TCGA-BR-7851-01 14 75022288 75022288 G A LTBP2 Silent p.N313N 0.19 TCGA-BR-7851-01 14 75265533 75265533 A - YLPM1 Frame_Shift_Del p.M1180Cfs*27 0.19 TCGA-BR-7851-01 14 75415222 75415222 C T PGF Missense_Mutation p.R127H 0.18 tolerated(0.12) benign(0.012) TCGA-BR-7851-01 14 75470355 75470355 T G EIF2B2 Missense_Mutation p.L129R 0.14 deleterious(0) probably_damaging(0.998) TCGA-BR-7851-01 14 77935581 77935581 C T AHSA1 Missense_Mutation p.R336C 0.30 deleterious(0.05) benign(0.225) TCGA-BR-7851-01 14 80963818 80963818 T - CEP128 3'UTR 0.30 TCGA-BR-7851-01 14 81259426 81259426 T C CEP128 Missense_Mutation p.E413G 0.36 deleterious(0) probably_damaging(0.999) TCGA-BR-7851-01 14 81993096 81993096 T G SEL1L Silent p.P107P 0.26 TCGA-BR-7851-01 14 88894005 88894005 A - SPATA7 Frame_Shift_Del p.N294Tfs*2 0.15 TCGA-BR-7851-01 14 89039116 89039116 G A ZC3H14 Missense_Mutation p.R209H 0.05 tolerated(0.06) benign(0.031) TCGA-BR-7851-01 14 89878534 89878534 G - FOXN3 Frame_Shift_Del p.P96Hfs*42 0.37 TCGA-BR-7851-01 14 90738656 90738656 C T PSMC1 Missense_Mutation p.R410C 0.50 tolerated(0.06) benign(0.031) TCGA-BR-7851-01 14 90744727 90744727 G A NRDE2 Missense_Mutation p.R1150W 0.36 deleterious(0) unknown(0) TCGA-BR-7851-01 14 90783061 90783061 T - NRDE2 Frame_Shift_Del p.R90Gfs*69 0.14 TCGA-BR-7851-01 14 93043773 93043773 C T RIN3 Silent p.N106N 0.25 TCGA-BR-7851-01 14 94120340 94120340 G T UNC79 Missense_Mutation p.S1946I 0.28 deleterious(0) probably_damaging(0.998) TCGA-BR-7851-01 14 95056470 95056470 C A SERPINA5 Missense_Mutation p.R238S 0.22 tolerated(0.43) benign(0.07) TCGA-BR-7851-01 14 95081256 95081256 C T SERPINA3 Silent p.L160L 0.31 TCGA-BR-7851-01 14 96706965 96706965 C T BDKRB2 Silent p.A100A 0.35 TCGA-BR-7851-01 15 100269416 100269416 G T LYSMD4 Missense_Mutation p.P269Q 0.34 deleterious(0.02) possibly_damaging(0.693) TCGA-BR-7851-01 15 101565120 101565120 C T LRRK1 Missense_Mutation p.A727V 0.35 deleterious(0.01) probably_damaging(1) TCGA-BR-7851-01 15 102345982 102345982 G A OR4F6 Silent p.S20S 0.14 TCGA-BR-7851-01 15 22369288 22369288 C T OR4M2 Missense_Mutation p.A238V 0.24 tolerated(0.07) benign(0.217) TCGA-BR-7851-01 15 22851104 22851104 C T TUBGCP5 Nonsense_Mutation p.Q456* 0.15 TCGA-BR-7851-01 15 25200134 25200134 G A SNRPN Intron 0.36 TCGA-BR-7851-01 15 27114364 27114364 T C GABRA5 5'UTR 0.24 TCGA-BR-7851-01 15 28200305 28200305 T - OCA2 Frame_Shift_Del p.K614Sfs*14 0.24 TCGA-BR-7851-01 15 28326974 28326974 G A OCA2 Missense_Mutation p.A16V 0.42 tolerated_low_confidence(0.19) benign(0.033) TCGA-BR-7851-01 15 29561064 29561064 G T NDNL2 Nonsense_Mutation p.Y282* 0.39 TCGA-BR-7851-01 15 30029534 30029534 T C TJP1 Silent p.V447V 0.15 TCGA-BR-7851-01 15 32929210 32929210 G T ARHGAP11A Missense_Mutation p.G746C 0.18 deleterious(0.05) benign(0.267) TCGA-BR-7851-01 15 34532875 34532875 A G SLC12A6 Missense_Mutation p.L808S 0.28 tolerated(0.23) benign(0.271) TCGA-BR-7851-01 15 34652412 34652412 T C LPCAT4 Splice_Site p.X382_splice 0.32 TCGA-BR-7851-01 15 37390290 37390290 G A MEIS2 Silent p.H41H 0.37 TCGA-BR-7851-01 15 40512803 40512803 G A BUB1B Missense_Mutation p.R999Q 0.24 tolerated(0.07) benign(0.053) TCGA-BR-7851-01 15 40661464 40661464 C T DISP2 Missense_Mutation p.R1051C 0.21 deleterious(0) probably_damaging(0.998) TCGA-BR-7851-01 15 41165405 41165405 C T RHOV Missense_Mutation p.A188T 0.32 deleterious(0) possibly_damaging(0.866) TCGA-BR-7851-01 15 41194934 41194934 G A VPS18 Missense_Mutation p.A773T 0.25 deleterious(0) probably_damaging(0.977) TCGA-BR-7851-01 15 41641419 41641419 C T NUSAP1 Missense_Mutation p.R96C 0.27 tolerated(0.07) benign(0.005) TCGA-BR-7851-01 15 42703188 42703188 G T CAPN3 Missense_Mutation p.E790D 0.25 deleterious(0.03) benign(0.224) TCGA-BR-7851-01 15 43378309 43378309 A G UBR1 Missense_Mutation p.F71L 0.24 tolerated(1) benign(0) TCGA-BR-7851-01 15 43924970 43924970 G T CATSPER2 Silent p.S447S 0.10 TCGA-BR-7851-01 15 43925000 43925000 C T CATSPER2 Silent p.K437K 0.36 TCGA-BR-7851-01 15 44127316 44127316 G A WDR76 Missense_Mutation p.A174T 0.29 deleterious(0.01) probably_damaging(0.98) TCGA-BR-7851-01 15 45445636 45445636 C T DUOX1 Silent p.S1161S 0.30 TCGA-BR-7851-01 15 48566829 48566829 T C SLC12A1 Missense_Mutation p.S822P 0.39 deleterious(0.01) possibly_damaging(0.811) TCGA-BR-7851-01 15 50534848 50534848 G T HDC Missense_Mutation p.P533H 0.34 deleterious_low_confidence(0.01) benign(0.344) TCGA-BR-7851-01 15 50544900 50544900 G A HDC Missense_Mutation p.R287W 0.41 deleterious(0) probably_damaging(1) TCGA-BR-7851-01 15 50546332 50546332 C T HDC Missense_Mutation p.V239I 0.29 tolerated(0.2) benign(0.027) TCGA-BR-7851-01 15 50925140 50925140 T - TRPM7 Frame_Shift_Del p.T353Hfs*16 0.29 TCGA-BR-7851-01 15 54786884 54786884 A G UNC13C Missense_Mutation p.Y1671C 0.17 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BR-7851-01 15 57839711 57839711 T C CGNL1 3'UTR 0.06 TCGA-BR-7851-01 15 59186705 59186705 C T SLTM Missense_Mutation p.S435N 0.21 deleterious(0.01) unknown(0) TCGA-BR-7851-01 15 60297193 60297193 G A FOXB1 Missense_Mutation p.D11N 0.42 tolerated(0.05) probably_damaging(0.957) TCGA-BR-7851-01 15 60806925 60806925 G A RORA Missense_Mutation p.A138V 0.36 tolerated(1) benign(0.076) TCGA-BR-7851-01 15 63353977 63353977 A G TPM1 Intron 0.11 TCGA-BR-7851-01 15 65497795 65497795 C T CILP Missense_Mutation p.R145H 0.33 tolerated(0.15) benign(0.009) TCGA-BR-7851-01 15 65499345 65499345 C T CILP Missense_Mutation p.G67R 0.16 deleterious(0) probably_damaging(1) TCGA-BR-7851-01 15 65681222 65681222 C T IGDCC4 Silent p.E877E 0.28 TCGA-BR-7851-01 15 67073733 67073733 G A SMAD6 Missense_Mutation p.E451K 0.30 tolerated(0.64) benign(0.041) TCGA-BR-7851-01 15 70970500 70970500 T - UACA Frame_Shift_Del p.I313Ffs*19 0.09 TCGA-BR-7851-01 15 71125328 71125328 T - LARP6 Frame_Shift_Del p.N180Tfs*34 0.22 TCGA-BR-7851-01 15 72459385 72459385 C T GRAMD2 Missense_Mutation p.A141T 0.19 deleterious(0) probably_damaging(1) TCGA-BR-7851-01 15 73617718 73617718 T C HCN4 Missense_Mutation p.D553G 0.21 deleterious(0.02) unknown(0) TCGA-BR-7851-01 15 75090973 75090973 T C CSK Silent p.G11G 0.24 TCGA-BR-7851-01 15 75105187 75105187 G A LMAN1L 5'UTR 0.46 TCGA-BR-7851-01 15 75108796 75108796 A G LMAN1L Missense_Mutation p.H120R 0.45 tolerated(0.87) benign(0.004) TCGA-BR-7851-01 15 75142904 75142904 T C SCAMP2 Missense_Mutation p.T195A 0.06 tolerated(0.08) possibly_damaging(0.842) TCGA-BR-7851-01 15 75500243 75500244 - A C15orf39 Frame_Shift_Ins p.I621Dfs*156 0.19 TCGA-BR-7851-01 15 75641547 75641547 T - NEIL1 Frame_Shift_Del p.Y102Tfs*51 0.21 TCGA-BR-7851-01 15 75644525 75644525 T C NEIL1 Missense_Mutation p.F170L 0.14 deleterious(0.02) benign(0.157) TCGA-BR-7851-01 15 75644698 75644698 G A NEIL1 Silent p.S196S 0.28 TCGA-BR-7851-01 15 75706642 75706642 G A SIN3A Missense_Mutation p.A126V 0.24 deleterious(0) probably_damaging(0.999) TCGA-BR-7851-01 15 80414053 80414053 G A ZFAND6 Splice_Site p.X52_splice 0.20 TCGA-BR-7851-01 15 81271632 81271632 C T MESDC2 Silent p.K211K 0.27 TCGA-BR-7851-01 15 83523551 83523551 C T HOMER2 Missense_Mutation p.A177T 0.06 tolerated(0.05) benign(0.283) TCGA-BR-7851-01 15 89453092 89453092 G A MFGE8 Nonsense_Mutation p.R46* 0.37 TCGA-BR-7851-01 15 90168494 90168494 C T TICRR Silent p.H1651H 0.31 TCGA-BR-7851-01 15 90190140 90190140 C - KIF7 Frame_Shift_Del p.G570Vfs*29 0.22 TCGA-BR-7851-01 15 90764988 90764988 C T SEMA4B Silent p.R284R 0.29 TCGA-BR-7851-01 15 91424619 91424619 C T FURIN Silent p.D632D 0.20 TCGA-BR-7851-01 15 99465555 99465555 C T IGF1R Missense_Mutation p.R794W 0.36 deleterious(0) possibly_damaging(0.586) TCGA-BR-7851-01 16 1397564 1397564 C T BAIAP3 Missense_Mutation p.R983W 0.31 deleterious(0) probably_damaging(0.996) TCGA-BR-7851-01 16 1500618 1500620 GAA - CLCN7 In_Frame_Del p.F499del 0.28 TCGA-BR-7851-01 16 15781279 15781279 C T NDE1 Missense_Mutation p.A145V 0.23 tolerated(0.27) probably_damaging(0.97) TCGA-BR-7851-01 16 15813528 15813528 C T MYH11 Missense_Mutation p.A1673T 0.29 possibly_damaging(0.825) TCGA-BR-7851-01 16 1642178 1642178 G A IFT140 Silent p.D211D 0.23 TCGA-BR-7851-01 16 1706049 1706049 C T CRAMP1L Missense_Mutation p.R431W 0.32 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-BR-7851-01 16 1716093 1716093 C T CRAMP1L Silent p.P924P 0.21 TCGA-BR-7851-01 16 18880551 18880551 C T SMG1 Missense_Mutation p.R903H 0.32 deleterious(0.03) probably_damaging(0.977) TCGA-BR-7851-01 16 19702698 19702698 G A C16orf62 Missense_Mutation p.G940R 0.07 deleterious(0) probably_damaging(0.985) TCGA-BR-7851-01 16 2051135 2051135 C T ZNF598 Silent p.Q357Q 0.25 TCGA-BR-7851-01 16 2160688 2160688 G A PKD1 Missense_Mutation p.R1494C 0.37 benign(0.015) TCGA-BR-7851-01 16 23480253 23480253 G T GGA2 Missense_Mutation p.P562H 0.28 tolerated(0.13) probably_damaging(0.988) TCGA-BR-7851-01 16 24801392 24801392 A G TNRC6A Missense_Mutation p.S477G 0.31 tolerated(0.1) benign(0) TCGA-BR-7851-01 16 25232875 25232875 G - AQP8 Frame_Shift_Del p.M122Cfs*10 0.21 TCGA-BR-7851-01 16 25251835 25251835 C T ZKSCAN2 Missense_Mutation p.V736I 0.42 tolerated(1) benign(0.005) TCGA-BR-7851-01 16 26147016 26147016 G A HS3ST4 Missense_Mutation p.R273H 0.33 deleterious(0) probably_damaging(1) TCGA-BR-7851-01 16 27761081 27761081 C T KIAA0556 Missense_Mutation p.R934W 0.17 deleterious(0) benign(0.233) TCGA-BR-7851-01 16 2814062 2814062 C T SRRM2 Missense_Mutation p.A1178V 0.31 unknown(0) TCGA-BR-7851-01 16 28164076 28164076 C T XPO6 Silent p.R376R 0.25 TCGA-BR-7851-01 16 2817604 2817604 G A SRRM2 Missense_Mutation p.A2359T 0.32 possibly_damaging(0.895) TCGA-BR-7851-01 16 28618378 28618378 G A SULT1A1 Silent p.N131N 0.08 TCGA-BR-7851-01 16 2871411 2871411 G T PRSS21 Missense_Mutation p.W250C 0.06 deleterious(0) probably_damaging(1) TCGA-BR-7851-01 16 28909569 28909569 G A ATP2A1 Missense_Mutation p.V521I 0.31 tolerated(0.6) benign(0.31) TCGA-BR-7851-01 16 30096424 30096424 G A PPP4C 3'UTR 0.29 TCGA-BR-7851-01 16 30455992 30455992 C T SEPHS2 Missense_Mutation p.V353I 0.20 benign(0.012) TCGA-BR-7851-01 16 30536304 30536304 G A ZNF768 Missense_Mutation p.S386L 0.17 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-BR-7851-01 16 30750269 30750269 C A SRCAP Missense_Mutation p.P2970T 0.31 unknown(0) TCGA-BR-7851-01 16 30982758 30982758 G A SETD1A Missense_Mutation p.E1026K 0.24 benign(0.305) TCGA-BR-7851-01 16 3100409 3100409 G C MMP25 Missense_Mutation p.A175P 0.37 deleterious(0.01) probably_damaging(0.983) TCGA-BR-7851-01 16 31091411 31091411 C T ZNF646 Nonsense_Mutation p.R1256* 0.15 TCGA-BR-7851-01 16 31092651 31092651 C T ZNF646 Missense_Mutation p.A1669V 0.35 tolerated(0.31) benign(0.001) TCGA-BR-7851-01 16 31228091 31228091 G A PYDC1 Missense_Mutation p.R87W 0.27 deleterious(0.01) probably_damaging(0.932) TCGA-BR-7851-01 16 3139433 3139433 C T ZSCAN10 Missense_Mutation p.G613S 0.34 tolerated(0.09) probably_damaging(1) TCGA-BR-7851-01 16 3349597 3349597 G A TIGD7 Missense_Mutation p.R340W 0.40 deleterious(0) possibly_damaging(0.896) TCGA-BR-7851-01 16 3777887 3777887 G A CREBBP Silent p.L2387L 0.27 TCGA-BR-7851-01 16 3778282 3778282 G - CREBBP Frame_Shift_Del p.L2256Sfs*46 0.29 TCGA-BR-7851-01 16 3781302 3781302 G A CREBBP Missense_Mutation p.T1688M 0.11 unknown(0) TCGA-BR-7851-01 16 3786655 3786655 T C CREBBP Missense_Mutation p.Y1519C 0.35 unknown(0) TCGA-BR-7851-01 16 4292061 4292061 G A SRL Missense_Mutation p.A3V 0.28 deleterious_low_confidence(0.04) unknown(0) TCGA-BR-7851-01 16 4834042 4834042 G A SEPT12 Silent p.N134N 0.26 TCGA-BR-7851-01 16 50342322 50342322 G A ADCY7 Silent p.S645S 0.14 TCGA-BR-7851-01 16 50346848 50346848 C T ADCY7 Silent p.S884S 0.16 TCGA-BR-7851-01 16 50354205 50354205 C T BRD7 Silent p.P571P 0.30 TCGA-BR-7851-01 16 53276875 53276875 A G CHD9 Missense_Mutation p.R1001G 0.26 probably_damaging(0.999) TCGA-BR-7851-01 16 54966466 54966466 C T IRX5 Silent p.Y102Y 0.27 TCGA-BR-7851-01 16 55361530 55361530 G A IRX6 Missense_Mutation p.R149H 0.31 deleterious(0) possibly_damaging(0.728) TCGA-BR-7851-01 16 56396360 56396362 ACA - AMFR 3'UTR 0.20 TCGA-BR-7851-01 16 56419830 56419830 C T AMFR Splice_Site p.X460_splice 0.24 TCGA-BR-7851-01 16 56977311 56977312 AG - HERPUD1 3'UTR 0.47 TCGA-BR-7851-01 16 57100498 57100498 G T NLRC5 Nonsense_Mutation p.E1432* 0.17 TCGA-BR-7851-01 16 57111659 57111659 G A NLRC5 Missense_Mutation p.G1650R 0.35 deleterious(0) probably_damaging(0.997) TCGA-BR-7851-01 16 57113198 57113201 AGAT - NLRC5 Frame_Shift_Del p.I1745Tfs*27 0.31 TCGA-BR-7851-01 16 58581543 58581543 C T CNOT1 Missense_Mutation p.R1189H 0.32 deleterious(0) probably_damaging(0.925) TCGA-BR-7851-01 16 61688000 61688000 C T CDH8 Missense_Mutation p.V638M 0.18 deleterious(0.01) probably_damaging(0.992) TCGA-BR-7851-01 16 66943992 66943992 G A CDH16 Silent p.S724S 0.38 TCGA-BR-7851-01 16 67410682 67410682 G A LRRC36 Silent p.P571P 0.25 TCGA-BR-7851-01 16 67655481 67655481 A - CTCF Frame_Shift_Del p.S450Vfs*61 0.14 TCGA-BR-7851-01 16 67697400 67697400 G A ENKD1 Missense_Mutation p.P268L 0.36 deleterious(0) benign(0.061) TCGA-BR-7851-01 16 67911587 67911587 G A EDC4 Intron 0.42 TCGA-BR-7851-01 16 67964403 67964403 C T CTRL Missense_Mutation p.R136H 0.34 tolerated(0.57) benign(0.009) TCGA-BR-7851-01 16 67974268 67974268 C T LCAT Missense_Mutation p.V288M 0.34 deleterious(0) possibly_damaging(0.887) TCGA-BR-7851-01 16 69782983 69782983 C T NOB1 Silent p.E188E 0.19 TCGA-BR-7851-01 16 70505166 70505166 C T FUK Missense_Mutation p.R418C 0.46 tolerated(0.06) benign(0.008) TCGA-BR-7851-01 16 71318067 71318067 G A CMTR2 Missense_Mutation p.S586L 0.47 tolerated(0.11) benign(0.001) TCGA-BR-7851-01 16 71748635 71748635 C T PHLPP2 Missense_Mutation p.D22N 0.31 deleterious(0.01) possibly_damaging(0.606) TCGA-BR-7851-01 16 7680608 7680608 C T RBFOX1 Missense_Mutation p.T247M 0.20 tolerated(0.05) possibly_damaging(0.585) TCGA-BR-7851-01 16 81167281 81167281 C T PKD1L2 RNA 0.27 TCGA-BR-7851-01 16 81411205 81411205 G T GAN 3'UTR 0.30 TCGA-BR-7851-01 16 85954892 85954892 C T IRF8 3'UTR 0.08 TCGA-BR-7851-01 16 88061178 88061178 C T BANP Missense_Mutation p.R321C 0.30 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-BR-7851-01 16 88747890 88747890 T C SNAI3 Silent p.V103V 0.22 TCGA-BR-7851-01 17 10233779 10233779 G A MYH13 Missense_Mutation p.T787M 0.50 deleterious(0.02) benign(0.004) TCGA-BR-7851-01 17 10297588 10297588 C T MYH8 Missense_Mutation p.R1715H 0.28 deleterious(0) benign(0.262) TCGA-BR-7851-01 17 10450814 10450814 C T MYH2 Missense_Mutation p.R109H 0.29 deleterious(0.01) possibly_damaging(0.722) TCGA-BR-7851-01 17 10545555 10545555 A G MYH3 Splice_Site p.X653_splice 0.50 TCGA-BR-7851-01 17 14205007 14205007 G A HS3ST3B1 Missense_Mutation p.A58T 0.30 tolerated_low_confidence(0.41) possibly_damaging(0.692) TCGA-BR-7851-01 17 1542125 1542125 C G SCARF1 Missense_Mutation p.A447P 0.36 deleterious(0.01) possibly_damaging(0.866) TCGA-BR-7851-01 17 15909803 15909803 T C TTC19 Silent p.V199V 0.26 TCGA-BR-7851-01 17 16024504 16024504 G A NCOR1 Nonsense_Mutation p.R572* 0.29 TCGA-BR-7851-01 17 16527079 16527079 C T ZNF624 Missense_Mutation p.R374H 0.23 tolerated(0.66) benign(0.027) TCGA-BR-7851-01 17 17250123 17250123 C T NT5M Silent p.A183A 0.25 TCGA-BR-7851-01 17 17997255 17997255 G A DRG2 Missense_Mutation p.V65M 0.11 deleterious(0.01) probably_damaging(0.983) TCGA-BR-7851-01 17 18022483 18022483 C T MYO15A Silent p.R123R 0.39 TCGA-BR-7851-01 17 18034563 18034563 C G MYO15A Missense_Mutation p.A1350G 0.11 unknown(0) TCGA-BR-7851-01 17 18881325 18881325 C T FAM83G Missense_Mutation p.A552T 0.24 tolerated_low_confidence(0.31) benign(0.001) TCGA-BR-7851-01 17 20000031 20000031 C T SPECC1 Missense_Mutation p.R23W 0.21 deleterious(0) probably_damaging(0.967) TCGA-BR-7851-01 17 20361661 20361661 G A LGALS9B Silent p.N56N 0.29 TCGA-BR-7851-01 17 20921419 20921419 G A USP22 Missense_Mutation p.R176C 0.19 deleterious(0) probably_damaging(0.999) TCGA-BR-7851-01 17 21206533 21206533 G A MAP2K3 Silent p.S185S 0.09 TCGA-BR-7851-01 17 2200609 2200609 C T SMG6 Silent p.Q693Q 0.30 TCGA-BR-7851-01 17 2202996 2202996 G A SMG6 Missense_Mutation p.R351C 0.19 deleterious_low_confidence(0) possibly_damaging(0.768) TCGA-BR-7851-01 17 2282421 2282421 C T SGSM2 Silent p.L997L 0.22 TCGA-BR-7851-01 17 25950388 25950388 C T KSR1 3'UTR 0.27 TCGA-BR-7851-01 17 26966334 26966334 T - KIAA0100 Frame_Shift_Del p.R410Efs*56 0.21 TCGA-BR-7851-01 17 27002046 27002046 A G SUPT6H Missense_Mutation p.Y135C 0.23 tolerated(0.18) unknown(0) TCGA-BR-7851-01 17 27076100 27076100 T C TRAF4 Silent p.S306S 0.07 TCGA-BR-7851-01 17 27849338 27849338 C T TAOK1 Missense_Mutation p.A650V 0.29 tolerated(0.05) benign(0.313) TCGA-BR-7851-01 17 27889799 27889799 C T ABHD15 Missense_Mutation p.R396H 0.25 tolerated(0.1) benign(0.362) TCGA-BR-7851-01 17 28548814 28548814 C T SLC6A4 Missense_Mutation p.A55T 0.17 tolerated(0.61) benign(0.004) TCGA-BR-7851-01 17 29123265 29123265 A - CRLF3 Frame_Shift_Del p.F172Lfs*6 0.24 TCGA-BR-7851-01 17 32953916 32953916 C - TMEM132E Frame_Shift_Del p.R192Gfs*13 0.24 TCGA-BR-7851-01 17 33586029 33586029 G A SLFN5 Missense_Mutation p.G107D 0.26 tolerated(0.11) probably_damaging(0.931) TCGA-BR-7851-01 17 34305185 34305185 G A CCL16 Missense_Mutation p.A64V 0.29 deleterious(0) probably_damaging(0.961) TCGA-BR-7851-01 17 34325931 34325931 A C CCL15 Missense_Mutation p.L36R 0.28 tolerated(0.24) benign(0.007) TCGA-BR-7851-01 17 34398397 34398397 C T CCL18 Missense_Mutation p.A89V 0.31 deleterious(0) benign(0.19) TCGA-BR-7851-01 17 35346004 35346004 T A AATF Silent p.S378S 0.18 TCGA-BR-7851-01 17 35549074 35549074 A C ACACA Missense_Mutation p.F1458C 0.21 deleterious(0) probably_damaging(0.999) TCGA-BR-7851-01 17 36059100 36059100 G A HNF1B Silent p.N545N 0.32 TCGA-BR-7851-01 17 36484063 36484063 T C GPR179 Missense_Mutation p.R1797G 0.06 deleterious(0.01) possibly_damaging(0.907) TCGA-BR-7851-01 17 36895356 36895356 C T PCGF2 Missense_Mutation p.R94Q 0.19 deleterious(0) probably_damaging(0.995) TCGA-BR-7851-01 17 36927329 36927329 C T PIP4K2B Missense_Mutation p.R335Q 0.14 tolerated(0.36) benign(0.009) TCGA-BR-7851-01 17 36955530 36955530 C - PIP4K2B Frame_Shift_Del p.V50* 0.29 TCGA-BR-7851-01 17 37564657 37564659 AGG - MED1 In_Frame_Del p.S1272del 0.21 TCGA-BR-7851-01 17 37566787 37566787 G A MED1 Missense_Mutation p.P563S 0.37 tolerated(0.23) probably_damaging(0.914) TCGA-BR-7851-01 17 37627211 37627211 A G CDK12 Missense_Mutation p.S376G 0.28 unknown(0) TCGA-BR-7851-01 17 38430168 38430168 C T WIPF2 Missense_Mutation p.T366M 0.34 deleterious(0.01) probably_damaging(0.997) TCGA-BR-7851-01 17 38449856 38449857 AT - CDC6 Frame_Shift_Del p.M271Dfs*31 0.18 TCGA-BR-7851-01 17 38506123 38506123 C A RARA Missense_Mutation p.R139S 0.31 deleterious(0.02) benign(0.289) TCGA-BR-7851-01 17 38645087 38645087 G A TNS4 Nonsense_Mutation p.R192* 0.23 TCGA-BR-7851-01 17 38975866 38975866 C A KRT10 Nonsense_Mutation p.E426* 0.31 TCGA-BR-7851-01 17 39279872 39279872 C T KRTAP4-12 Missense_Mutation p.R168H 0.27 deleterious(0.05) unknown(0) TCGA-BR-7851-01 17 40275359 40275359 C T HSPB9 3'UTR 0.18 TCGA-BR-7851-01 17 40344470 40344470 G A GHDC Silent p.A226A 0.31 TCGA-BR-7851-01 17 40766006 40766006 C T TUBG1 Missense_Mutation p.T278M 0.30 tolerated(0.25) benign(0.149) TCGA-BR-7851-01 17 40854922 40854922 G A EZH1 Missense_Mutation p.A719V 0.24 deleterious(0.02) probably_damaging(0.994) TCGA-BR-7851-01 17 40965966 40965966 C G BECN1 Missense_Mutation p.K347N 0.26 deleterious(0.01) probably_damaging(0.993) TCGA-BR-7851-01 17 41142424 41142424 G A RUNDC1 Missense_Mutation p.S316N 0.31 tolerated(0.53) benign(0.003) TCGA-BR-7851-01 17 41477713 41477713 C - ARL4D 3'UTR 0.28 TCGA-BR-7851-01 17 42284915 42284915 T A UBTF Missense_Mutation p.E692D 0.37 tolerated(0.68) benign(0.001) TCGA-BR-7851-01 17 43227260 43227260 G A HEXIM1 Missense_Mutation p.D235N 0.31 deleterious(0.01) probably_damaging(0.995) TCGA-BR-7851-01 17 47590364 47590364 C T NGFR Missense_Mutation p.P426L 0.47 tolerated(0.07) probably_damaging(0.926) TCGA-BR-7851-01 17 48560736 48560736 G T RSAD1 Missense_Mutation p.G314C 0.33 deleterious(0.02) benign(0.019) TCGA-BR-7851-01 17 48628888 48628888 C T SPATA20 Silent p.G531G 0.22 TCGA-BR-7851-01 17 48827882 48827882 A - LUC7L3 Frame_Shift_Del p.S389Vfs*3 0.25 TCGA-BR-7851-01 17 48917204 48917204 C - WFIKKN2 Frame_Shift_Del p.P187Hfs*41 0.18 TCGA-BR-7851-01 17 48918383 48918383 C - WFIKKN2 3'UTR 0.24 TCGA-BR-7851-01 17 4927502 4927502 C T KIF1C 3'UTR 0.21 TCGA-BR-7851-01 17 51901779 51901779 G A KIF2B Missense_Mutation p.R462Q 0.26 deleterious(0.02) probably_damaging(0.912) TCGA-BR-7851-01 17 5250183 5250183 G A RABEP1 Silent p.Q249Q 0.19 TCGA-BR-7851-01 17 53158486 53158486 G A STXBP4 Silent p.T477T 0.37 TCGA-BR-7851-01 17 5405119 5405119 G A NLRP1 3'UTR 0.07 TCGA-BR-7851-01 17 56247177 56247177 A G OR4D2 Missense_Mutation p.Q54R 0.38 tolerated(1) benign(0) TCGA-BR-7851-01 17 56386700 56386702 CTC - BZRAP1 In_Frame_Del p.E1311del 0.57 TCGA-BR-7851-01 17 56620148 56620148 C A C17orf47 Missense_Mutation p.S467I 0.44 tolerated(0.1) benign(0.233) TCGA-BR-7851-01 17 57134362 57134362 T - TRIM37 Frame_Shift_Del p.N358Ifs*33 0.20 TCGA-BR-7851-01 17 57189647 57189647 T C SKA2 Silent p.P119P 0.20 TCGA-BR-7851-01 17 57775153 57775153 C T PTRH2 Missense_Mutation p.G63R 0.31 deleterious(0.01) benign(0.242) TCGA-BR-7851-01 17 59482855 59482855 G A TBX2 Silent p.A448A 0.38 TCGA-BR-7851-01 17 60072703 60072703 G T MED13 Missense_Mutation p.P664H 0.12 tolerated(0.17) benign(0.001) TCGA-BR-7851-01 17 61781804 61781804 G - STRADA Frame_Shift_Del p.R333Gfs*42 0.26 TCGA-BR-7851-01 17 61788193 61788193 C T STRADA Missense_Mutation p.E118K 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-BR-7851-01 17 61897668 61897668 T C FTSJ3 Missense_Mutation p.N735D 0.24 deleterious(0.03) probably_damaging(0.999) TCGA-BR-7851-01 17 62019051 62019051 C T SCN4A Missense_Mutation p.E1531K 0.22 deleterious(0) benign(0.426) TCGA-BR-7851-01 17 62024461 62024461 G A SCN4A Missense_Mutation p.R1129W 0.34 deleterious(0) probably_damaging(1) TCGA-BR-7851-01 17 6331701 6331701 G A AIPL1 Silent p.Y134Y 0.12 TCGA-BR-7851-01 17 63532585 63532585 C - AXIN2 Frame_Shift_Del p.G665Afs*24 0.33 TCGA-BR-7851-01 17 6380417 6380417 C T PITPNM3 Silent p.P339P 0.17 TCGA-BR-7851-01 17 644552 644552 G A FAM57A Silent p.Q172Q 0.28 TCGA-BR-7851-01 17 6510506 6510506 T - KIAA0753 Frame_Shift_Del p.K638Nfs*18 0.21 TCGA-BR-7851-01 17 66038442 66038442 G A KPNA2 Missense_Mutation p.A182T 0.03 deleterious(0.02) benign(0.425) TCGA-BR-7851-01 17 66270149 66270150 - C SLC16A6 Frame_Shift_Ins p.L99Afs*34 0.30 TCGA-BR-7851-01 17 67075398 67075398 T C ABCA6 Missense_Mutation p.N1569D 0.29 tolerated(0.12) benign(0.003) TCGA-BR-7851-01 17 68129031 68129031 G A KCNJ16 Missense_Mutation p.R268H 0.23 tolerated(0.07) probably_damaging(0.97) TCGA-BR-7851-01 17 686479 686479 C A RNMTL1 Silent p.V157V 0.28 TCGA-BR-7851-01 17 7133463 7133463 G T DVL2 Missense_Mutation p.S141Y 0.27 deleterious(0.01) possibly_damaging(0.454) TCGA-BR-7851-01 17 7329696 7329696 G A C17orf74 Missense_Mutation p.R129H 0.44 tolerated(0.37) probably_damaging(0.923) TCGA-BR-7851-01 17 7329702 7329702 A G C17orf74 Missense_Mutation p.H131R 0.34 tolerated(0.74) benign(0) TCGA-BR-7851-01 17 73389745 73389745 G - GRB2 5'UTR 0.12 TCGA-BR-7851-01 17 73484941 73484941 G A KIAA0195 Silent p.Q238Q 0.07 TCGA-BR-7851-01 17 73513713 73513713 A G TSEN54 Missense_Mutation p.T149A 0.07 tolerated(0.3) benign(0.01) TCGA-BR-7851-01 17 7366339 7366340 - TCC ZBTB4 In_Frame_Ins p.E654dup 0.34 TCGA-BR-7851-01 17 73733713 73733713 T C ITGB4 Silent p.C736C 0.11 TCGA-BR-7851-01 17 73870678 73870679 AA - TRIM47 Frame_Shift_Del p.F601Cfs*130 0.30 TCGA-BR-7851-01 17 74003238 74003238 C A EVPL Missense_Mutation p.E2016D 0.27 tolerated(0.12) benign(0.333) TCGA-BR-7851-01 17 7402445 7402445 C T POLR2A Missense_Mutation p.R475C 0.33 probably_damaging(0.953) TCGA-BR-7851-01 17 74073381 74073381 A G GALR2 Missense_Mutation p.M345V 0.33 tolerated_low_confidence(1) benign(0) TCGA-BR-7851-01 17 74732956 74732956 G - SRSF2 Frame_Shift_Del p.P96Rfs*148 0.22 TCGA-BR-7851-01 17 7612855 7612856 - C EFNB3 Frame_Shift_Ins p.Q331Pfs*20 0.23 TCGA-BR-7851-01 17 76968444 76968444 G T LGALS3BP Silent p.A324A 0.36 TCGA-BR-7851-01 17 7794347 7794347 G A CHD3 Silent p.T217T 0.35 TCGA-BR-7851-01 17 7797559 7797559 C T CHD3 Missense_Mutation p.R410W 0.23 possibly_damaging(0.689) TCGA-BR-7851-01 17 78176119 78176119 G A CARD14 Missense_Mutation p.D707N 0.29 tolerated(0.28) probably_damaging(0.997) TCGA-BR-7851-01 17 79234093 79234093 G A SLC38A10 Silent p.G411G 0.30 TCGA-BR-7851-01 17 79411725 79411726 - C RP11-1055B8.7 Frame_Shift_Ins p.G851Rfs*229 0.10 TCGA-BR-7851-01 17 79514275 79514275 G A C17orf70 Silent p.G611G 0.33 TCGA-BR-7851-01 17 79910724 79910724 G A NOTUM 3'UTR 0.31 TCGA-BR-7851-01 17 80059474 80059474 C - FASN 5'Flank 0.18 TCGA-BR-7851-01 17 80059546 80059546 G - FASN 5'Flank 0.09 TCGA-BR-7851-01 17 80441589 80441589 C T NARF Intron 0.18 TCGA-BR-7851-01 17 8108286 8108286 G A AURKB Missense_Mutation p.S313L 0.50 tolerated(0.15) benign(0.019) TCGA-BR-7851-01 17 8273299 8273299 C T KRBA2 Missense_Mutation p.R211H 0.05 tolerated(0.13) benign(0.01) TCGA-BR-7851-01 17 9536336 9536336 G A WDR16 Missense_Mutation p.G436S 0.36 tolerated(0.05) probably_damaging(0.954) TCGA-BR-7851-01 18 11876645 11876645 C A GNAL Silent p.P396P 0.29 TCGA-BR-7851-01 18 12506563 12506563 G A SPIRE1 Silent p.N295N 0.28 TCGA-BR-7851-01 18 21115622 21115622 G A NPC1 Silent p.D1096D 0.16 TCGA-BR-7851-01 18 2775770 2775770 G A SMCHD1 Silent p.A1738A 0.41 TCGA-BR-7851-01 18 28666590 28666590 C T DSC2 Missense_Mutation p.M297I 0.26 tolerated(0.94) benign(0.1) TCGA-BR-7851-01 18 29126729 29126729 C T DSG2 3'UTR 0.41 TCGA-BR-7851-01 18 29488794 29488794 G A TRAPPC8 Nonsense_Mutation p.R349* 0.48 TCGA-BR-7851-01 18 31803175 31803175 A G NOL4 Missense_Mutation p.C15R 0.20 deleterious(0) probably_damaging(0.994) TCGA-BR-7851-01 18 43224100 43224100 C T SLC14A2 Silent p.S442S 0.32 TCGA-BR-7851-01 18 43418949 43418949 T C SIGLEC15 Missense_Mutation p.F255L 0.22 tolerated(0.08) possibly_damaging(0.664) TCGA-BR-7851-01 18 43469907 43469907 T C EPG5 Splice_Site p.X1604_splice 0.11 TCGA-BR-7851-01 18 44560047 44560047 C T TCEB3B Missense_Mutation p.R530H 0.33 tolerated(1) benign(0.048) TCGA-BR-7851-01 18 44641701 44641701 T C HDHD2 Silent p.A138A 0.20 TCGA-BR-7851-01 18 45372100 45372100 C T SMAD2 Missense_Mutation p.V357M 0.22 deleterious(0) probably_damaging(0.991) TCGA-BR-7851-01 18 45566686 45566686 C T ZBTB7C Missense_Mutation p.G265S 0.37 tolerated(0.66) benign(0.348) TCGA-BR-7851-01 18 50985626 50985626 C T DCC Silent p.G1139G 0.30 TCGA-BR-7851-01 18 5419926 5419926 T C EPB41L3 Intron 0.27 TCGA-BR-7851-01 18 54358513 54358513 G - WDR7 Frame_Shift_Del p.D264Tfs*44 0.25 TCGA-BR-7851-01 18 61569682 61569682 A - SERPINB2 Frame_Shift_Del p.N242Tfs*5 0.14 TCGA-BR-7851-01 18 64218423 64218423 T C CDH19 Missense_Mutation p.D228G 0.08 deleterious(0) probably_damaging(1) TCGA-BR-7851-01 18 65178798 65178798 A - DSEL Frame_Shift_Del p.Q1027Rfs*4 0.21 TCGA-BR-7851-01 18 72775812 72775812 G T ZNF407 Missense_Mutation p.Q2045H 0.16 deleterious(0.02) benign(0.054) TCGA-BR-7851-01 18 74778306 74778307 - T MBP Frame_Shift_Ins p.R30Efs*5 0.22 TCGA-BR-7851-01 18 76753092 76753092 C T SALL3 Silent p.S367S 0.45 TCGA-BR-7851-01 18 76754571 76754571 C T SALL3 Silent p.T860T 0.29 TCGA-BR-7851-01 18 77475256 77475256 G A CTDP1 Missense_Mutation p.R599H 0.40 deleterious(0) probably_damaging(0.999) TCGA-BR-7851-01 18 9255251 9255253 AGA GG ANKRD12 Frame_Shift_Del p.K664Sfs*48 0.26 TCGA-BR-7851-01 19 1007860 1007861 - C GRIN3B Frame_Shift_Ins p.K738Qfs*34 0.35 TCGA-BR-7851-01 19 10226201 10226201 A G EIF3G Missense_Mutation p.S301P 0.20 deleterious(0.04) probably_damaging(0.972) TCGA-BR-7851-01 19 10531499 10531499 G A PDE4A Missense_Mutation p.R20Q 0.40 deleterious_low_confidence(0.01) possibly_damaging(0.689) TCGA-BR-7851-01 19 10610652 10610652 G A KEAP1 Nonsense_Mutation p.Q20* 0.08 TCGA-BR-7851-01 19 11107211 11107211 G A SMARCA4 Silent p.P601P 0.29 TCGA-BR-7851-01 19 11569369 11569369 C T ELAVL3 Missense_Mutation p.G131R 0.28 deleterious(0) probably_damaging(0.918) TCGA-BR-7851-01 19 12060023 12060023 G A ZNF700 Missense_Mutation p.C395Y 0.29 deleterious(0.01) probably_damaging(1) TCGA-BR-7851-01 19 12126523 12126523 T - ZNF433 Frame_Shift_Del p.T387Lfs*284 0.18 TCGA-BR-7851-01 19 12501767 12501767 C T ZNF799 Missense_Mutation p.G482E 0.23 deleterious(0.03) probably_damaging(0.991) TCGA-BR-7851-01 19 12800856 12800856 G A FBXW9 Missense_Mutation p.R318W 0.25 deleterious(0) possibly_damaging(0.785) TCGA-BR-7851-01 19 12985485 12985485 C A MAST1 Missense_Mutation p.P1505Q 0.34 deleterious_low_confidence(0.03) benign(0.181) TCGA-BR-7851-01 19 13226178 13226178 A C TRMT1 Missense_Mutation p.S186A 0.22 deleterious(0.04) possibly_damaging(0.733) TCGA-BR-7851-01 19 13993679 13993680 - G C19orf57 Frame_Shift_Ins p.L617Pfs*115 0.24 TCGA-BR-7851-01 19 14157020 14157020 C T IL27RA Missense_Mutation p.R275C 0.30 deleterious(0.02) possibly_damaging(0.613) TCGA-BR-7851-01 19 14261714 14261714 C T LPHN1 Missense_Mutation p.G1466R 0.11 deleterious(0) probably_damaging(0.99) TCGA-BR-7851-01 19 14266920 14266920 A G LPHN1 Splice_Site p.X1047_splice 0.22 TCGA-BR-7851-01 19 14273846 14273846 C T LPHN1 Missense_Mutation p.R261H 0.15 tolerated(0.05) possibly_damaging(0.727) TCGA-BR-7851-01 19 15065111 15065111 G A SLC1A6 Silent p.C400C 0.26 TCGA-BR-7851-01 19 15791216 15791216 C T CYP4F12 Silent p.L138L 0.38 TCGA-BR-7851-01 19 16628088 16628090 GGA - C19orf44 In_Frame_Del p.E652del 0.39 TCGA-BR-7851-01 19 17213232 17213232 C T MYO9B Silent p.I235I 0.38 TCGA-BR-7851-01 19 17412369 17412369 G A ABHD8 Silent p.N19N 0.25 TCGA-BR-7851-01 19 17516268 17516268 C T BST2 Silent p.V39V 0.18 TCGA-BR-7851-01 19 17844195 17844195 C T MAP1S Silent p.D994D 0.24 TCGA-BR-7851-01 19 17886791 17886791 C T FCHO1 Splice_Site p.X335_splice 0.37 TCGA-BR-7851-01 19 17887479 17887480 - C FCHO1 Frame_Shift_Ins p.R417Qfs*29 0.22 TCGA-BR-7851-01 19 17937670 17937670 G T JAK3 Missense_Mutation p.P1086Q 0.22 deleterious(0.01) probably_damaging(0.996) TCGA-BR-7851-01 19 18377082 18377082 A G KIAA1683 Missense_Mutation p.I423T 0.20 tolerated(0.57) benign(0.004) TCGA-BR-7851-01 19 18898336 18898336 G A COMP Missense_Mutation p.R367W 0.33 tolerated(0.18) possibly_damaging(0.707) TCGA-BR-7851-01 19 19165115 19165115 C T ARMC6 Silent p.D336D 0.24 TCGA-BR-7851-01 19 19338599 19338599 T C NCAN Missense_Mutation p.S724P 0.32 tolerated(0.38) benign(0.001) TCGA-BR-7851-01 19 19369374 19369374 C T HAPLN4 Missense_Mutation p.E259K 0.24 tolerated(0.92) benign(0.143) TCGA-BR-7851-01 19 19606902 19606902 G A GATAD2A Silent p.P266P 0.21 TCGA-BR-7851-01 19 19626062 19626062 G A TSSK6 Nonsense_Mutation p.R59* 0.37 TCGA-BR-7851-01 19 19681519 19681519 G A PBX4 Missense_Mutation p.A106V 0.23 tolerated(0.11) benign(0.02) TCGA-BR-7851-01 19 20727685 20727685 T C ZNF737 Missense_Mutation p.T442A 0.19 tolerated(0.17) benign(0.002) TCGA-BR-7851-01 19 20728103 20728103 C T ZNF737 Silent p.A302A 0.31 TCGA-BR-7851-01 19 21239589 21239589 A G ZNF430 Missense_Mutation p.K159E 0.20 tolerated(0.12) benign(0.176) TCGA-BR-7851-01 19 2291560 2291560 G A LINGO3 Silent p.G72G 0.50 TCGA-BR-7851-01 19 24270010 24270010 C T ZNF254 5'UTR 0.50 TCGA-BR-7851-01 19 31039638 31039638 A G ZNF536 Missense_Mutation p.T1038A 0.18 tolerated(0.64) benign(0.001) TCGA-BR-7851-01 19 31048208 31048208 C T ZNF536 3'UTR 0.25 TCGA-BR-7851-01 19 33716477 33716477 C T SLC7A10 Missense_Mutation p.A45T 0.38 deleterious(0) probably_damaging(0.99) TCGA-BR-7851-01 19 3600363 3600363 G A TBXA2R Silent p.A90A 0.26 TCGA-BR-7851-01 19 36019046 36019047 CT - SBSN Frame_Shift_Del p.E46Gfs*27 0.22 TCGA-BR-7851-01 19 36230389 36230389 G A IGFLR1 Missense_Mutation p.A287V 0.25 deleterious(0.02) probably_damaging(0.973) TCGA-BR-7851-01 19 36515513 36515513 C A CLIP3 Missense_Mutation p.A235S 0.12 tolerated(0.07) benign(0.003) TCGA-BR-7851-01 19 36518142 36518142 C T CLIP3 Silent p.A66A 0.29 TCGA-BR-7851-01 19 36594454 36594454 G A WDR62 Missense_Mutation p.V1242M 0.13 tolerated(0.37) benign(0.012) TCGA-BR-7851-01 19 36673976 36673976 G A ZNF565 Missense_Mutation p.R298W 0.29 deleterious(0.02) benign(0.011) TCGA-BR-7851-01 19 36727929 36727929 G A ZNF146 Missense_Mutation p.R196Q 0.28 tolerated(0.2) benign(0.002) TCGA-BR-7851-01 19 38167213 38167213 G A ZNF781 Intron 0.20 TCGA-BR-7851-01 19 3823259 3823259 C T ZFR2 Silent p.P452P 0.29 TCGA-BR-7851-01 19 38655514 38655514 G - SIPA1L3 Frame_Shift_Del p.G1394Afs*99 0.35 TCGA-BR-7851-01 19 38876327 38876327 C T GGN Silent p.T525T 0.45 TCGA-BR-7851-01 19 38934390 38934390 G A RYR1 Missense_Mutation p.M126I 0.26 benign(0.089) TCGA-BR-7851-01 19 39013867 39013867 G A RYR1 Missense_Mutation p.R3453H 0.30 benign(0) TCGA-BR-7851-01 19 39322455 39322455 C T ECH1 5'UTR 0.27 TCGA-BR-7851-01 19 39336661 39336661 G A HNRNPL Silent p.N152N 0.29 TCGA-BR-7851-01 19 39399408 39399408 G A NFKBIB Missense_Mutation p.S336N 0.37 tolerated_low_confidence(0.08) benign(0.069) TCGA-BR-7851-01 19 39406730 39406730 G A SARS2 Missense_Mutation p.R434C 0.29 deleterious(0) probably_damaging(0.998) TCGA-BR-7851-01 19 39412274 39412274 G A SARS2 Intron 0.30 TCGA-BR-7851-01 19 39804758 39804758 C T LRFN1 Missense_Mutation p.G407S 0.24 deleterious(0.04) probably_damaging(0.978) TCGA-BR-7851-01 19 3981982 3981982 C T EEF2 Missense_Mutation p.R287H 0.04 deleterious(0.03) probably_damaging(0.991) TCGA-BR-7851-01 19 40331273 40331273 T A FBL Silent p.G55G 0.20 TCGA-BR-7851-01 19 40487231 40487231 C T PSMC4 3'UTR 0.31 TCGA-BR-7851-01 19 41115674 41115675 - C LTBP4 Frame_Shift_Ins p.P597Afs*45 0.19 TCGA-BR-7851-01 19 42893100 42893100 G A CNFN Silent p.D30D 0.36 TCGA-BR-7851-01 19 43259235 43259235 G T PSG8 Missense_Mutation p.P298H 0.15 deleterious(0.05) probably_damaging(0.967) TCGA-BR-7851-01 19 44130372 44130372 G A CADM4 Missense_Mutation p.R190C 0.20 deleterious(0) probably_damaging(0.997) TCGA-BR-7851-01 19 44500737 44500737 G A ZNF155 Missense_Mutation p.R254H 0.38 tolerated(0.34) possibly_damaging(0.554) TCGA-BR-7851-01 19 44636092 44636092 A G ZNF225 Missense_Mutation p.D442G 0.06 tolerated(0.27) benign(0.005) TCGA-BR-7851-01 19 45448482 45448482 C A APOC4 Missense_Mutation p.L102I 0.05 tolerated(0.41) possibly_damaging(0.498) TCGA-BR-7851-01 19 45766584 45766584 G A MARK4 Missense_Mutation p.R105Q 0.17 deleterious(0) probably_damaging(0.945) TCGA-BR-7851-01 19 45996513 45996513 G - RTN2 Frame_Shift_Del p.P313Lfs*9 0.24 TCGA-BR-7851-01 19 46280835 46280836 AG - DMPK Frame_Shift_Del p.L309Afs*9 0.13 TCGA-BR-7851-01 19 46308106 46308106 G A RSPH6A Missense_Mutation p.R353C 0.21 deleterious(0.01) probably_damaging(0.93) TCGA-BR-7851-01 19 46815873 46815873 C A HIF3A Missense_Mutation p.Q330K 0.26 tolerated(0.19) benign(0.274) TCGA-BR-7851-01 19 46832648 46832648 G A HIF3A Missense_Mutation p.R542H 0.22 deleterious(0) probably_damaging(0.999) TCGA-BR-7851-01 19 47236446 47236446 G T STRN4 Missense_Mutation p.S196Y 0.21 deleterious(0) possibly_damaging(0.542) TCGA-BR-7851-01 19 4818050 4818050 G A TICAM1 Missense_Mutation p.R114W 0.32 deleterious(0) probably_damaging(0.999) TCGA-BR-7851-01 19 48722193 48722193 G A CARD8 Missense_Mutation p.P413L 0.39 tolerated(0.24) benign(0.401) TCGA-BR-7851-01 19 48968094 48968094 G T KCNJ14 3'UTR 0.19 TCGA-BR-7851-01 19 49000732 49000732 G - LMTK3 Frame_Shift_Del p.K1228Sfs*117 0.16 TCGA-BR-7851-01 19 49110288 49110288 C T SPACA4 Missense_Mutation p.T18M 0.24 tolerated(0.09) benign(0.015) TCGA-BR-7851-01 19 49692270 49692270 G A TRPM4 Silent p.P647P 0.26 TCGA-BR-7851-01 19 49950717 49950717 G A PIH1D1 Silent p.R163R 0.29 TCGA-BR-7851-01 19 49969002 49969002 C - ALDH16A1 Frame_Shift_Del p.Y528Mfs*99 0.20 TCGA-BR-7851-01 19 49971689 49971689 C T ALDH16A1 Silent p.L664L 0.29 TCGA-BR-7851-01 19 50463680 50463680 T C SIGLEC11 Splice_Site p.X154_splice 0.62 TCGA-BR-7851-01 19 50926138 50926138 C T SPIB Silent p.F61F 0.38 TCGA-BR-7851-01 19 51503785 51503785 T C KLK8 Missense_Mutation p.H87R 0.29 deleterious(0.02) benign(0.237) TCGA-BR-7851-01 19 5206763 5206763 G A PTPRS 3'UTR 0.32 TCGA-BR-7851-01 19 52619867 52619867 T - ZNF616 Frame_Shift_Del p.T184Rfs*45 0.22 TCGA-BR-7851-01 19 52918821 52918821 A T ZNF528 Missense_Mutation p.K239M 0.16 deleterious(0) probably_damaging(0.999) TCGA-BR-7851-01 19 53473579 53473579 G A ZNF702P RNA 0.21 TCGA-BR-7851-01 19 54234335 54234335 C T MIR518A1 RNA 0.20 TCGA-BR-7851-01 19 54377015 54377015 G A MYADM Missense_Mutation p.V78M 0.24 tolerated(0.55) benign(0.29) TCGA-BR-7851-01 19 54394974 54394974 T C PRKCG Silent p.S192S 0.33 TCGA-BR-7851-01 19 54567044 54567044 G A VSTM1 5'UTR 0.22 TCGA-BR-7851-01 19 54659493 54659493 C T LENG1 Missense_Mutation p.R254H 0.24 deleterious(0.01) probably_damaging(0.911) TCGA-BR-7851-01 19 55361920 55361920 C T KIR3DL2 5'UTR 0.59 TCGA-BR-7851-01 19 55417575 55417575 C T NCR1 Silent p.C10C 0.29 TCGA-BR-7851-01 19 55614811 55614811 C T PPP1R12C Missense_Mutation p.V233M 0.24 deleterious(0) probably_damaging(1) TCGA-BR-7851-01 19 55687120 55687120 C T SYT5 Missense_Mutation p.R166Q 0.25 deleterious(0) probably_damaging(0.984) TCGA-BR-7851-01 19 5587937 5587937 G A SAFB2 Silent p.R860R 0.32 TCGA-BR-7851-01 19 5587943 5587943 C T SAFB2 Silent p.Q858Q 0.46 TCGA-BR-7851-01 19 56465979 56465979 C T NLRP8 Silent p.H185H 0.21 TCGA-BR-7851-01 19 56565126 56565126 C T NLRP5 Missense_Mutation p.A1084V 0.28 tolerated(0.27) benign(0.131) TCGA-BR-7851-01 19 58038879 58038879 C T ZNF549 5'UTR 0.53 TCGA-BR-7851-01 19 58152086 58152086 G A ZNF211 Missense_Mutation p.V143M 0.41 tolerated(0.14) possibly_damaging(0.61) TCGA-BR-7851-01 19 58152796 58152796 G A ZNF211 Silent p.A379A 0.26 TCGA-BR-7851-01 19 5831827 5831827 T C FUT6 Missense_Mutation p.H251R 0.16 deleterious(0.03) probably_damaging(0.931) TCGA-BR-7851-01 19 5844584 5844584 G A FUT3 Silent p.A89A 0.24 TCGA-BR-7851-01 19 5951588 5951588 T - RANBP3 Frame_Shift_Del p.N33Tfs*31 0.37 TCGA-BR-7851-01 19 6495655 6495655 C T TUBB4A Silent p.T285T 0.30 TCGA-BR-7851-01 19 6669903 6669903 G A TNFSF14 Nonsense_Mutation p.Q60* 0.24 TCGA-BR-7851-01 19 6821668 6821668 G A VAV1 Silent p.P119P 0.16 TCGA-BR-7851-01 19 7584410 7584410 C T ZNF358 Silent p.L94L 0.34 TCGA-BR-7851-01 19 7605913 7605913 G A PNPLA6 Silent p.P309P 0.31 TCGA-BR-7851-01 19 7684652 7684657 CTCGTC - XAB2 In_Frame_Del p.D828_E829del 0.14 TCGA-BR-7851-01 19 8320751 8320751 G A CERS4 Silent p.S152S 0.23 TCGA-BR-7851-01 19 8528508 8528508 A - HNRNPM Frame_Shift_Del p.A128Lfs*5 0.20 TCGA-BR-7851-01 19 8656953 8656953 G A ADAMTS10 Missense_Mutation p.S541L 0.16 tolerated(0.51) benign(0.121) TCGA-BR-7851-01 19 8668665 8668665 T C ADAMTS10 Missense_Mutation p.Y180C 0.29 deleterious(0) probably_damaging(0.994) TCGA-BR-7851-01 19 8807972 8807972 G A ACTL9 Silent p.R360R 0.44 TCGA-BR-7851-01 19 9000147 9000147 C A MUC16 Missense_Mutation p.R13537M 0.26 probably_damaging(0.989) TCGA-BR-7851-01 1 100534100 100534100 G A HIAT1 Silent p.P259P 0.28 TCGA-BR-7851-01 1 101440402 101440402 G A SLC30A7 Missense_Mutation p.A374T 0.44 tolerated(0.33) probably_damaging(0.934) TCGA-BR-7851-01 1 103453196 103453196 C T COL11A1 Missense_Mutation p.G832E 0.19 unknown(0) TCGA-BR-7851-01 1 107867369 107867369 C T NTNG1 Missense_Mutation p.R238C 0.22 deleterious(0.01) probably_damaging(0.92) TCGA-BR-7851-01 1 109143275 109143275 A G FAM102B Silent p.L75L 0.34 TCGA-BR-7851-01 1 109192991 109192991 G A HENMT1 Missense_Mutation p.R200C 0.22 tolerated(0.21) benign(0.081) TCGA-BR-7851-01 1 109235364 109235364 G T PRPF38B Missense_Mutation p.G51C 0.37 deleterious(0) probably_damaging(1) TCGA-BR-7851-01 1 109466682 109466683 CA - GPSM2 Frame_Shift_Del p.Q555Efs*6 0.16 TCGA-BR-7851-01 1 110255352 110255352 C T GSTM5 Intron 0.17 TCGA-BR-7851-01 1 111216961 111216961 G A KCNA3 Silent p.D157D 0.22 TCGA-BR-7851-01 1 112302123 112302123 T C DDX20 Silent p.I166I 0.30 TCGA-BR-7851-01 1 1168142 1168142 C T B3GALT6 Missense_Mutation p.R162W 0.26 deleterious(0) probably_damaging(0.999) TCGA-BR-7851-01 1 117629087 117629087 G T TTF2 Missense_Mutation p.K701N 0.30 deleterious(0) probably_damaging(0.974) TCGA-BR-7851-01 1 118492448 118492448 T A WDR3 Missense_Mutation p.S533R 0.17 tolerated(0.18) benign(0.149) TCGA-BR-7851-01 1 120497755 120497755 G A NOTCH2 Silent p.P709P 0.30 TCGA-BR-7851-01 1 120539849 120539850 - A NOTCH2 Frame_Shift_Ins p.T175Hfs*6 0.22 TCGA-BR-7851-01 1 12409351 12409351 C A VPS13D Silent p.T3117T 0.34 TCGA-BR-7851-01 1 12776289 12776289 T A AADACL3 5'UTR 0.28 TCGA-BR-7851-01 1 1322609 1322617 CCTCACCTC - CCNL2 Missense_Mutation 0.09 TCGA-BR-7851-01 1 145518235 145518235 C T PEX11B Missense_Mutation p.R113C 0.21 tolerated(0.05) benign(0.347) TCGA-BR-7851-01 1 149881071 149881071 G A SV2A Missense_Mutation p.S411L 0.22 tolerated(0.16) benign(0.036) TCGA-BR-7851-01 1 150305577 150305577 G A PRPF3 Missense_Mutation p.R212Q 0.21 tolerated(0.92) benign(0.038) TCGA-BR-7851-01 1 150485747 150485747 G A ECM1 Missense_Mutation p.R503Q 0.24 tolerated(0.24) benign(0.194) TCGA-BR-7851-01 1 151280270 151280270 C T PI4KB Missense_Mutation p.R333Q 0.31 deleterious(0.01) probably_damaging(1) TCGA-BR-7851-01 1 151491113 151491113 C T CGN Nonsense_Mutation p.R40* 0.29 TCGA-BR-7851-01 1 152080843 152080843 C T TCHH Missense_Mutation p.R1617H 0.33 unknown(0) TCGA-BR-7851-01 1 152082357 152082357 C A TCHH Missense_Mutation p.E1112D 0.18 unknown(0) TCGA-BR-7851-01 1 153516206 153516206 C T S100A4 3'UTR 0.30 TCGA-BR-7851-01 1 153730118 153730118 A G INTS3 Missense_Mutation p.Q343R 0.27 deleterious(0) probably_damaging(0.986) TCGA-BR-7851-01 1 153904887 153904887 T C DENND4B Silent p.A1263A 0.50 TCGA-BR-7851-01 1 154897535 154897535 C T PMVK 3'UTR 0.33 TCGA-BR-7851-01 1 154987334 154987334 C T ZBTB7B Silent p.G100G 0.21 TCGA-BR-7851-01 1 155154492 155154492 G A TRIM46 Missense_Mutation p.V585M 0.40 deleterious(0.02) possibly_damaging(0.907) TCGA-BR-7851-01 1 155254532 155254532 G A HCN3 Missense_Mutation p.R358H 0.17 deleterious(0) possibly_damaging(0.906) TCGA-BR-7851-01 1 155265010 155265010 C T PKLR Silent p.A197A 0.25 TCGA-BR-7851-01 1 156206195 156206195 T G PMF1 Missense_Mutation p.W142G 0.30 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-BR-7851-01 1 156214974 156214974 C T PAQR6 Missense_Mutation p.A84T 0.16 tolerated_low_confidence(0.07) benign(0.163) TCGA-BR-7851-01 1 156237904 156237904 A G SMG5 Splice_Site p.X303_splice 0.30 TCGA-BR-7851-01 1 156339144 156339144 G A RHBG Missense_Mutation p.R35H 0.25 deleterious(0.03) probably_damaging(0.995) TCGA-BR-7851-01 1 156449123 156449123 C - MEF2D Frame_Shift_Del p.G208Vfs*3 0.32 TCGA-BR-7851-01 1 156756757 156756757 C A PRCC Missense_Mutation p.P292T 0.10 tolerated(0.32) benign(0.114) TCGA-BR-7851-01 1 157666085 157666085 G A FCRL3 Missense_Mutation p.R293W 0.25 deleterious(0.01) benign(0.041) TCGA-BR-7851-01 1 158151490 158151490 G A CD1D Missense_Mutation p.A103T 0.13 deleterious(0.04) benign(0.39) TCGA-BR-7851-01 1 159888466 159888466 C - TAGLN2 3'UTR 0.25 TCGA-BR-7851-01 1 160136351 160136351 C T ATP1A4 Missense_Mutation p.R361W 0.31 deleterious(0.01) possibly_damaging(0.825) TCGA-BR-7851-01 1 160188206 160188206 G A DCAF8 Missense_Mutation p.R683W 0.29 deleterious(0) probably_damaging(0.999) TCGA-BR-7851-01 1 16074160 16074160 A G TMEM82 3'UTR 0.37 TCGA-BR-7851-01 1 16235876 16235876 A C SPEN Silent p.A314A 0.35 TCGA-BR-7851-01 1 16258928 16258928 A - SPEN Frame_Shift_Del p.K2066Nfs*20 0.20 TCGA-BR-7851-01 1 16375037 16375037 G A CLCNKB Silent p.A205A 0.24 TCGA-BR-7851-01 1 165632255 165632255 G A ALDH9A1 3'UTR 0.37 TCGA-BR-7851-01 1 166819124 166819124 C T POGK Silent p.H436H 0.23 TCGA-BR-7851-01 1 166944501 166944501 T C ILDR2 Missense_Mutation p.D2G 0.26 deleterious_low_confidence(0.02) possibly_damaging(0.531) TCGA-BR-7851-01 1 167653175 167653175 G A RCSD1 Silent p.S15S 0.30 TCGA-BR-7851-01 1 1686048 1686048 C T NADK Missense_Mutation p.G405S 0.20 tolerated(1) benign(0.01) TCGA-BR-7851-01 1 16893738 16893738 C T NBPF1 Silent p.Q925Q 0.03 TCGA-BR-7851-01 1 169672458 169672458 C A SELL Missense_Mutation p.G310V 0.16 deleterious(0) probably_damaging(1) TCGA-BR-7851-01 1 169696562 169696562 T C SELE Missense_Mutation p.T525A 0.28 tolerated(0.32) benign(0.035) TCGA-BR-7851-01 1 169823861 169823861 G A SCYL3 Silent p.C573C 0.33 TCGA-BR-7851-01 1 17297237 17297237 C T CROCC Missense_Mutation p.A1920V 0.32 possibly_damaging(0.695) TCGA-BR-7851-01 1 173494047 173494047 A G SLC9C2 Silent p.G795G 0.20 TCGA-BR-7851-01 1 174418193 174418193 T C GPR52 Missense_Mutation p.V315A 0.20 deleterious(0) possibly_damaging(0.829) TCGA-BR-7851-01 1 174671277 174671277 T - RABGAP1L Frame_Shift_Del p.S686Lfs*3 0.39 TCGA-BR-7851-01 1 175066629 175066629 G T TNN Missense_Mutation p.Q555H 0.22 deleterious(0.02) possibly_damaging(0.897) TCGA-BR-7851-01 1 17634769 17634769 G A PADI4 Missense_Mutation p.V18M 0.35 deleterious(0.02) probably_damaging(0.958) TCGA-BR-7851-01 1 178414799 178414799 T C RASAL2 Splice_Site p.X543_splice 0.12 TCGA-BR-7851-01 1 181453006 181453006 G A CACNA1E Silent p.T42T 0.23 TCGA-BR-7851-01 1 182908370 182908370 T - SHCBP1L Frame_Shift_Del p.K339Nfs*5 0.23 TCGA-BR-7851-01 1 185109329 185109329 T - TRMT1L Frame_Shift_Del p.K295Nfs*14 0.28 TCGA-BR-7851-01 1 185897784 185897784 T - HMCN1 Frame_Shift_Del p.F514Lfs*26 0.31 TCGA-BR-7851-01 1 193099372 193099372 G A CDC73 Silent p.A102A 0.30 TCGA-BR-7851-01 1 19449428 19449429 - A UBR4 Frame_Shift_Ins p.G3239Wfs*29 0.21 TCGA-BR-7851-01 1 1961598 1961598 G - GABRD Frame_Shift_Del p.G414Afs*95 0.22 TCGA-BR-7851-01 1 196977710 196977710 C T CFHR5 Missense_Mutation p.A536V 0.40 tolerated(0.52) benign(0.001) TCGA-BR-7851-01 1 197168526 197168526 T - ZBTB41 Frame_Shift_Del p.I360Yfs*14 0.28 TCGA-BR-7851-01 1 197411413 197411413 C T CRB1 Silent p.C1332C 0.19 TCGA-BR-7851-01 1 197621403 197621403 G T DENND1B Missense_Mutation p.P137T 0.13 tolerated(0.07) probably_damaging(0.981) TCGA-BR-7851-01 1 200376244 200376244 A G ZNF281 Missense_Mutation p.S864P 0.36 tolerated(0.44) benign(0.018) TCGA-BR-7851-01 1 200561296 200561296 T - KIF14 Frame_Shift_Del p.R909Gfs*9 0.17 TCGA-BR-7851-01 1 200827020 200827020 A - CAMSAP2 Frame_Shift_Del p.M1426* 0.24 TCGA-BR-7851-01 1 201184182 201184182 C T IGFN1 Silent p.L2965L 0.24 TCGA-BR-7851-01 1 201292264 201292264 A G PKP1 Missense_Mutation p.T564A 0.17 deleterious(0) probably_damaging(0.996) TCGA-BR-7851-01 1 201868874 201868874 G T LMOD1 Missense_Mutation p.H423N 0.29 probably_damaging(0.98) TCGA-BR-7851-01 1 20246820 20246820 C A PLA2G2E Missense_Mutation p.G137W 0.21 deleterious(0) probably_damaging(0.999) TCGA-BR-7851-01 1 203672793 203672793 C T ATP2B4 Silent p.D317D 0.20 TCGA-BR-7851-01 1 204228411 204228411 C - PLEKHA6 Frame_Shift_Del p.V328Yfs*172 0.22 TCGA-BR-7851-01 1 204438765 204438765 A G PIK3C2B Missense_Mutation p.S56P 0.29 tolerated_low_confidence(0.43) benign(0) TCGA-BR-7851-01 1 204588874 204588874 G A LRRN2 Missense_Mutation p.R83C 0.29 deleterious(0) possibly_damaging(0.806) TCGA-BR-7851-01 1 204951139 204951139 G A NFASC Missense_Mutation p.G821R 0.39 deleterious(0.01) probably_damaging(1) TCGA-BR-7851-01 1 205210873 205210873 C T TMCC2 Missense_Mutation p.R150C 0.31 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BR-7851-01 1 205211130 205211130 C T TMCC2 Silent p.N235N 0.13 TCGA-BR-7851-01 1 206943240 206943240 C T IL10 Splice_Site p.X127_splice 0.08 TCGA-BR-7851-01 1 207739262 207739262 T C CR1 Missense_Mutation p.C1316R 0.29 deleterious(0) possibly_damaging(0.61) TCGA-BR-7851-01 1 20827268 20827268 T C MUL1 Missense_Mutation p.E325G 0.26 tolerated(0.16) benign(0.009) TCGA-BR-7851-01 1 209933542 209933543 AG - TRAF3IP3 Frame_Shift_Del p.E55Afs*67 0.27 TCGA-BR-7851-01 1 214557889 214557889 G A PTPN14 Missense_Mutation p.P437S 0.04 deleterious(0) probably_damaging(0.998) TCGA-BR-7851-01 1 21605716 21605716 C T ECE1 Missense_Mutation p.C83Y 0.05 tolerated(0.23) benign(0.429) TCGA-BR-7851-01 1 216073455 216073455 G A USH2A Missense_Mutation p.A2519V 0.24 possibly_damaging(0.734) TCGA-BR-7851-01 1 216258044 216258044 T G USH2A Silent p.G1721G 0.27 TCGA-BR-7851-01 1 22048163 22048163 C T USP48 Silent p.L581L 0.29 TCGA-BR-7851-01 1 22157779 22157779 C T HSPG2 Missense_Mutation p.V3831I 0.31 benign(0.001) TCGA-BR-7851-01 1 223976852 223976852 T C TP53BP2 Silent p.S1007S 0.31 TCGA-BR-7851-01 1 226053631 226053631 C A TMEM63A Missense_Mutation p.D238Y 0.34 tolerated(0.48) benign(0.031) TCGA-BR-7851-01 1 227923089 227923089 C A JMJD4 Missense_Mutation p.Q8H 0.17 deleterious_low_confidence(0.04) benign(0.216) TCGA-BR-7851-01 1 228475489 228475489 G A OBSCN Silent p.A3642A 0.38 TCGA-BR-7851-01 1 228494839 228494839 C T OBSCN Missense_Mutation p.T5012M 0.23 benign(0.039) TCGA-BR-7851-01 1 228538597 228538597 C T OBSCN Silent p.D7081D 0.25 TCGA-BR-7851-01 1 230391063 230391063 C T GALNT2 Missense_Mutation p.P370L 0.26 deleterious(0) possibly_damaging(0.675) TCGA-BR-7851-01 1 230492718 230492718 G A PGBD5 Silent p.H158H 0.22 TCGA-BR-7851-01 1 232942219 232942219 C T MAP10 Missense_Mutation p.R484C 0.33 tolerated(0.2) benign(0.001) TCGA-BR-7851-01 1 233091397 233091397 G A NTPCR Silent p.Q43Q 0.21 TCGA-BR-7851-01 1 233518334 233518334 G T MLK4 Silent p.V996V 0.38 TCGA-BR-7851-01 1 235345233 235345233 T - ARID4B Frame_Shift_Del p.T1001Qfs*2 0.12 TCGA-BR-7851-01 1 235973208 235973208 C T LYST Missense_Mutation p.D304N 0.29 tolerated(0.65) benign(0.005) TCGA-BR-7851-01 1 236306298 236306298 T - GPR137B Frame_Shift_Del p.F127Sfs*5 0.21 TCGA-BR-7851-01 1 236740202 236740202 G A HEATR1 Missense_Mutation p.R935C 0.16 deleterious(0) probably_damaging(0.999) TCGA-BR-7851-01 1 236899013 236899013 C T ACTN2 Missense_Mutation p.A259V 0.20 deleterious(0.02) probably_damaging(0.994) TCGA-BR-7851-01 1 241803320 241803320 G C OPN3 Silent p.L79L 0.37 TCGA-BR-7851-01 1 2430252 2430252 G A PLCH2 Missense_Mutation p.V780M 0.44 deleterious(0.01) probably_damaging(0.967) TCGA-BR-7851-01 1 24383880 24383880 C T MYOM3 Missense_Mutation p.E1430K 0.33 tolerated(0.65) benign(0.234) TCGA-BR-7851-01 1 247902023 247902023 C T OR14K1 Missense_Mutation p.A36V 0.32 deleterious(0.02) benign(0.308) TCGA-BR-7851-01 1 248309326 248309326 C T OR2M5 Missense_Mutation p.R293C 0.29 tolerated(0.05) benign(0.006) TCGA-BR-7851-01 1 248436402 248436402 A T OR2T33 Missense_Mutation p.C239S 0.13 deleterious(0) probably_damaging(1) TCGA-BR-7851-01 1 249106454 249106454 C T SH3BP5L Missense_Mutation p.R276H 0.20 tolerated(0.53) possibly_damaging(0.493) TCGA-BR-7851-01 1 2493160 2493160 C T TNFRSF14 Silent p.H200H 0.18 TCGA-BR-7851-01 1 25944452 25944452 C - MAN1C1 Frame_Shift_Del p.R57Gfs*125 0.14 TCGA-BR-7851-01 1 26609150 26609150 C T UBXN11 Missense_Mutation p.A428T 0.36 tolerated(0.21) benign(0.043) TCGA-BR-7851-01 1 27101099 27101099 C T ARID1A Nonsense_Mutation p.R1461* 0.37 TCGA-BR-7851-01 1 27107205 27107205 A G ARID1A Silent p.S2272S 0.34 TCGA-BR-7851-01 1 27238427 27238427 G A NR0B2 Missense_Mutation p.P228L 0.32 deleterious(0.02) benign(0.311) TCGA-BR-7851-01 1 28099854 28099854 G - STX12 Frame_Shift_Del p.S15Rfs*29 0.35 TCGA-BR-7851-01 1 2939331 2939331 G A ACTRT2 Missense_Mutation p.A361T 0.24 tolerated(0.1) benign(0.022) TCGA-BR-7851-01 1 29650164 29650164 G A PTPRU Missense_Mutation p.V1336M 0.07 deleterious(0) benign(0.171) TCGA-BR-7851-01 1 31479860 31479860 G A PUM1 Silent p.D174D 0.05 TCGA-BR-7851-01 1 32163529 32163529 G A COL16A1 Missense_Mutation p.A212V 0.27 unknown(0) TCGA-BR-7851-01 1 33235543 33235543 C T KIAA1522 Missense_Mutation p.R255C 0.20 tolerated(0.19) unknown(0) TCGA-BR-7851-01 1 33291708 33291708 G A S100PBP Missense_Mutation p.C3Y 0.30 deleterious_low_confidence(0) probably_damaging(1) TCGA-BR-7851-01 1 33402698 33402698 G T RNF19B Silent p.P636P 0.29 TCGA-BR-7851-01 1 33407887 33407887 C T RNF19B Missense_Mutation p.G527S 0.23 tolerated(0.64) possibly_damaging(0.675) TCGA-BR-7851-01 1 3425195 3425195 G A MEGF6 Silent p.N529N 0.27 TCGA-BR-7851-01 1 35250436 35250436 C T GJB3 Silent p.L25L 0.21 TCGA-BR-7851-01 1 35321190 35321190 G T SMIM12 3'UTR 0.10 TCGA-BR-7851-01 1 35650166 35650166 G A SFPQ Missense_Mutation p.A672V 0.28 tolerated(0.11) benign(0.001) TCGA-BR-7851-01 1 35824656 35824656 T - ZMYM4 Frame_Shift_Del p.L74* 0.20 TCGA-BR-7851-01 1 36026428 36026428 A G NCDN Missense_Mutation p.S226G 0.35 tolerated(0.06) possibly_damaging(0.593) TCGA-BR-7851-01 1 37948942 37948942 A G ZC3H12A Silent p.P510P 0.06 TCGA-BR-7851-01 1 38155444 38155444 G A C1orf109 Missense_Mutation p.P37S 0.28 tolerated(0.08) benign(0.009) TCGA-BR-7851-01 1 39341336 39341336 A G GJA9 Silent p.N145N 0.10 TCGA-BR-7851-01 1 39877724 39877724 A - KIAA0754 Frame_Shift_Del p.K461Sfs*8 0.20 TCGA-BR-7851-01 1 39888401 39888401 G T MACF1 Splice_Site p.X3265_splice 0.06 TCGA-BR-7851-01 1 42048952 42048952 C T HIVEP3 Missense_Mutation p.R506Q 0.21 probably_damaging(0.996) TCGA-BR-7851-01 1 42049693 42049693 T C HIVEP3 Missense_Mutation p.Y259C 0.23 probably_damaging(0.999) TCGA-BR-7851-01 1 43394951 43394951 G A SLC2A1 Missense_Mutation p.A301V 0.27 deleterious(0) possibly_damaging(0.588) TCGA-BR-7851-01 1 43766758 43766758 C - TIE1 Frame_Shift_Del p.P7Lfs*19 0.19 TCGA-BR-7851-01 1 44466469 44466469 G A SLC6A9 Silent p.C575C 0.24 TCGA-BR-7851-01 1 44595230 44595230 G A KLF17 Missense_Mutation p.R96H 0.29 tolerated(1) benign(0) TCGA-BR-7851-01 1 44878287 44878287 C - RNF220 Frame_Shift_Del p.G175Vfs*3 0.22 TCGA-BR-7851-01 1 45407195 45407195 T C EIF2B3 Missense_Mutation p.K146R 0.23 tolerated(0.07) benign(0.023) TCGA-BR-7851-01 1 47716920 47716920 A G STIL Missense_Mutation p.I1252T 0.38 deleterious(0.01) benign(0.1) TCGA-BR-7851-01 1 52961127 52961127 A G ZCCHC11 Missense_Mutation p.V413A 0.22 deleterious(0) probably_damaging(0.969) TCGA-BR-7851-01 1 53068182 53068182 G A GPX7 Missense_Mutation p.R34Q 0.31 tolerated(0.06) benign(0.212) TCGA-BR-7851-01 1 54266463 54266463 A G NDC1 Silent p.G375G 0.35 TCGA-BR-7851-01 1 55186845 55186845 G A TTC4 Missense_Mutation p.R134H 0.23 deleterious(0) probably_damaging(0.99) TCGA-BR-7851-01 1 6184642 6184642 G A CHD5 Missense_Mutation p.R1492W 0.15 deleterious(0) probably_damaging(1) TCGA-BR-7851-01 1 63876940 63876940 C T ALG6 Silent p.H206H 0.25 TCGA-BR-7851-01 1 65157288 65157288 G T CACHD1 3'UTR 0.30 TCGA-BR-7851-01 1 66088619 66088619 G A LEPR Silent p.P876P 0.23 TCGA-BR-7851-01 1 67561987 67561988 - T C1orf141 Frame_Shift_Ins p.P122Tfs*2 0.39 TCGA-BR-7851-01 1 6885239 6885240 - A CAMTA1 Frame_Shift_Ins p.E70Rfs*8 0.16 TCGA-BR-7851-01 1 75679397 75679397 G T SLC44A5 Missense_Mutation p.P652H 0.28 deleterious(0) probably_damaging(1) TCGA-BR-7851-01 1 77510209 77510209 G - ST6GALNAC5 Frame_Shift_Del p.V195Cfs*5 0.20 TCGA-BR-7851-01 1 91405532 91405532 C T ZNF644 Missense_Mutation p.R460H 0.25 tolerated(0.07) probably_damaging(0.999) TCGA-BR-7851-01 1 93730225 93730225 T - CCDC18 Intron 0.40 TCGA-BR-7851-01 20 1286354 1286354 C T SNPH Missense_Mutation p.R381C 0.29 tolerated(0.25) benign(0.002) TCGA-BR-7851-01 20 16348120 16348120 A - KIF16B Frame_Shift_Del p.Y1284Ifs*18 0.18 TCGA-BR-7851-01 20 17601380 17601380 C T RRBP1 Missense_Mutation p.A730T 0.09 tolerated(0.18) possibly_damaging(0.695) TCGA-BR-7851-01 20 19698188 19698188 G A SLC24A3 Missense_Mutation p.R579K 0.05 tolerated(0.95) benign(0.074) TCGA-BR-7851-01 20 20552174 20552174 G A RALGAPA2 Silent p.D1028D 0.35 TCGA-BR-7851-01 20 21367540 21367540 C T XRN2 Missense_Mutation p.R895W 0.34 deleterious_low_confidence(0) possibly_damaging(0.72) TCGA-BR-7851-01 20 2442364 2442364 G A SNRPB 3'UTR 0.28 TCGA-BR-7851-01 20 3052291 3052291 G A OXT 5'UTR 0.43 TCGA-BR-7851-01 20 3128626 3128626 C T FASTKD5 Missense_Mutation p.R364H 0.20 deleterious(0) probably_damaging(1) TCGA-BR-7851-01 20 31368231 31368231 G A DNMT3B Silent p.S34S 0.31 TCGA-BR-7851-01 20 31375160 31375160 C - DNMT3B Frame_Shift_Del p.Y188Tfs*4 0.13 TCGA-BR-7851-01 20 31962015 31962015 G T CDK5RAP1 Missense_Mutation p.L371M 0.30 deleterious(0) probably_damaging(0.991) TCGA-BR-7851-01 20 32224505 32224505 A - CBFA2T2 Frame_Shift_Del p.T441Qfs*5 0.14 TCGA-BR-7851-01 20 32883307 32883307 C T AHCY Missense_Mutation p.R38Q 0.25 tolerated_low_confidence(0.1) benign(0.001) TCGA-BR-7851-01 20 32883364 32883364 C T AHCY Missense_Mutation p.R19H 0.27 tolerated_low_confidence(0.12) benign(0.102) TCGA-BR-7851-01 20 33345744 33345744 C T NCOA6 Silent p.Q269Q 0.41 TCGA-BR-7851-01 20 33589114 33589114 C T MYH7B Missense_Mutation p.R1890C 0.30 probably_damaging(0.999) TCGA-BR-7851-01 20 34572684 34572684 C T CNBD2 Missense_Mutation p.R234W 0.24 deleterious(0) probably_damaging(0.988) TCGA-BR-7851-01 20 36407704 36407704 G A CTNNBL1 Missense_Mutation p.G333D 0.17 deleterious(0.04) probably_damaging(0.999) TCGA-BR-7851-01 20 36431375 36431375 C T CTNNBL1 Nonsense_Mutation p.R380* 0.23 TCGA-BR-7851-01 20 3719329 3719329 C T HSPA12B Missense_Mutation p.A3V 0.28 tolerated_low_confidence(1) benign(0.031) TCGA-BR-7851-01 20 37353721 37353721 G A SLC32A1 Silent p.A118A 0.04 TCGA-BR-7851-01 20 37378698 37378698 C T ACTR5 Missense_Mutation p.P141S 0.27 deleterious(0) probably_damaging(0.92) TCGA-BR-7851-01 20 42972055 42972055 A G R3HDML Missense_Mutation p.E140G 0.27 tolerated(0.08) benign(0.012) TCGA-BR-7851-01 20 42979474 42979474 C A R3HDML 3'UTR 0.25 TCGA-BR-7851-01 20 43056983 43056983 A G HNF4A Missense_Mutation p.S380G 0.27 tolerated(0.17) benign(0) TCGA-BR-7851-01 20 43133514 43133514 C T SERINC3 Missense_Mutation p.G268S 0.39 deleterious(0.01) probably_damaging(0.954) TCGA-BR-7851-01 20 44639239 44639239 C T MMP9 Silent p.D163D 0.10 TCGA-BR-7851-01 20 44644923 44644923 G A MMP9 Nonsense_Mutation p.W680* 0.29 TCGA-BR-7851-01 20 45192098 45192098 G - SLC13A3 Frame_Shift_Del p.N530Tfs*21 0.36 TCGA-BR-7851-01 20 45354379 45354379 G A SLC2A10 Missense_Mutation p.G235D 0.27 deleterious(0) probably_damaging(1) TCGA-BR-7851-01 20 46265451 46265451 T G NCOA3 Missense_Mutation p.I774S 0.28 tolerated(0.84) benign(0.044) TCGA-BR-7851-01 20 473005 473005 G A CSNK2A1 Nonsense_Mutation p.R172* 0.24 TCGA-BR-7851-01 20 4864313 4864313 C T SLC23A2 Missense_Mutation p.G267R 0.23 deleterious(0) probably_damaging(0.988) TCGA-BR-7851-01 20 4866508 4866508 C T SLC23A2 Missense_Mutation p.R177Q 0.21 tolerated(0.23) benign(0.06) TCGA-BR-7851-01 20 49508146 49508146 T - ADNP Frame_Shift_Del p.V1036Lfs*45 0.20 TCGA-BR-7851-01 20 49575756 49575756 T C MOCS3 Missense_Mutation p.V126A 0.21 deleterious(0) probably_damaging(0.943) TCGA-BR-7851-01 20 49620767 49620767 G C KCNG1 Missense_Mutation p.L451V 0.06 tolerated(0.84) benign(0.252) TCGA-BR-7851-01 20 49626736 49626736 C T KCNG1 Missense_Mutation p.R47Q 0.42 tolerated(0.31) benign(0.001) TCGA-BR-7851-01 20 50769726 50769726 G A ZFP64 Silent p.R335R 0.27 TCGA-BR-7851-01 20 56190021 56190021 G A ZBP1 Nonsense_Mutation p.R142* 0.26 TCGA-BR-7851-01 20 57599576 57599576 C T TUBB1 Missense_Mutation p.A365V 0.15 tolerated_low_confidence(0.23) probably_damaging(0.994) TCGA-BR-7851-01 20 57599798 57599798 C T TUBB1 Missense_Mutation p.T439M 0.17 tolerated_low_confidence(0.13) benign(0) TCGA-BR-7851-01 20 60911481 60911481 G A LAMA5 Silent p.C746C 0.19 TCGA-BR-7851-01 20 62187663 62187663 C T C20orf195 Missense_Mutation p.A216V 0.28 deleterious(0) benign(0.016) TCGA-BR-7851-01 20 62324527 62324527 G A RTEL1 Silent p.K985K 0.27 TCGA-BR-7851-01 20 62551193 62551193 G T DNAJC5 Intron 0.36 TCGA-BR-7851-01 20 62598009 62598009 A G ZNF512B Silent p.P173P 0.32 TCGA-BR-7851-01 20 62729761 62729761 G A OPRL1 Missense_Mutation p.R241Q 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-BR-7851-01 20 62904825 62904827 GAA - PCMTD2 In_Frame_Del p.E323del 0.14 TCGA-BR-7851-01 21 10971319 10971319 A G TPTE Missense_Mutation p.V13A 0.09 tolerated_low_confidence(0.48) benign(0.011) TCGA-BR-7851-01 21 16338330 16338330 T - NRIP1 Frame_Shift_Del p.E729Rfs*5 0.28 TCGA-BR-7851-01 21 16340186 16340186 C T NRIP1 Missense_Mutation p.V110I 0.06 tolerated(0.08) probably_damaging(0.993) TCGA-BR-7851-01 21 27840845 27840845 G A CYYR1 Missense_Mutation p.P147L 0.10 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-BR-7851-01 21 30339484 30339484 A G LTN1 Silent p.D489D 0.31 TCGA-BR-7851-01 21 30464856 30464856 G A MAP3K7CL Silent p.K108K 0.05 TCGA-BR-7851-01 21 32502534 32502534 C T TIAM1 Missense_Mutation p.A1348T 0.27 tolerated(0.25) benign(0.001) TCGA-BR-7851-01 21 32589954 32589954 G A TIAM1 Missense_Mutation p.A686V 0.25 tolerated(0.64) benign(0.017) TCGA-BR-7851-01 21 33068925 33068925 C T SCAF4 Missense_Mutation p.A306T 0.25 benign(0.339) TCGA-BR-7851-01 21 34011320 34011320 C T SYNJ1 Missense_Mutation p.M1310I 0.32 tolerated_low_confidence(0.24) benign(0.002) TCGA-BR-7851-01 21 37741943 37741945 TAA - MORC3 In_Frame_Del p.N760del 0.29 TCGA-BR-7851-01 21 39671742 39671742 A G KCNJ15 Missense_Mutation p.T187A 0.44 tolerated(0.79) benign(0.016) TCGA-BR-7851-01 21 39755470 39755470 G A ERG Missense_Mutation p.A439V 0.27 tolerated(0.4) benign(0.018) TCGA-BR-7851-01 21 41423955 41423955 C T DSCAM Silent p.T1705T 0.32 TCGA-BR-7851-01 21 41496183 41496183 G - DSCAM Frame_Shift_Del p.P1212Lfs*4 0.21 TCGA-BR-7851-01 21 45811268 45811268 C T TRPM2 Silent p.T518T 0.34 TCGA-BR-7851-01 21 46387053 46387053 G A FAM207A Missense_Mutation p.E153K 0.38 deleterious(0.03) benign(0.103) TCGA-BR-7851-01 21 47571590 47571591 - C FTCD Frame_Shift_Ins p.A173Gfs*14 0.22 TCGA-BR-7851-01 21 47648682 47648682 G A LSS 5'UTR 0.33 TCGA-BR-7851-01 21 47662805 47662805 A - MCM3AP Frame_Shift_Del p.F1779Lfs*5 0.20 TCGA-BR-7851-01 22 18022614 18022614 T C CECR2 Missense_Mutation p.S907P 0.04 tolerated_low_confidence(0.16) benign(0.014) TCGA-BR-7851-01 22 18389600 18389600 C A MICAL3 5'UTR 0.30 TCGA-BR-7851-01 22 19130071 19130071 C T DGCR14 Missense_Mutation p.R127H 0.29 tolerated(0.17) possibly_damaging(0.594) TCGA-BR-7851-01 22 19263160 19263160 A G CLTCL1 Missense_Mutation p.V79A 0.27 deleterious(0) possibly_damaging(0.593) TCGA-BR-7851-01 22 19442297 19442297 C T UFD1L Missense_Mutation p.R275H 0.24 deleterious(0.03) benign(0.008) TCGA-BR-7851-01 22 21799284 21799284 C T HIC2 Silent p.L34L 0.23 TCGA-BR-7851-01 22 22287763 22287763 C A PPM1F Missense_Mutation p.E249D 0.22 deleterious(0) probably_damaging(1) TCGA-BR-7851-01 22 22516909 22516909 G A IGLV4-60 Missense_Mutation p.R66Q 0.30 tolerated(0.18) benign(0.037) TCGA-BR-7851-01 22 22661258 22661258 C T BMS1P20 RNA 0.18 TCGA-BR-7851-01 22 24122599 24122599 C T MMP11 Missense_Mutation p.A131V 0.29 tolerated(0.25) benign(0.365) TCGA-BR-7851-01 22 24135751 24135751 G A SMARCB1 Missense_Mutation p.G80R 0.27 deleterious(0.02) benign(0.208) TCGA-BR-7851-01 22 29141967 29141967 C T HSCB Missense_Mutation p.A180V 0.18 tolerated(0.17) benign(0.005) TCGA-BR-7851-01 22 29752476 29752476 G A AP1B1 Nonsense_Mutation p.Q219* 0.22 TCGA-BR-7851-01 22 30776051 30776051 C T RNF215 Silent p.Q336Q 0.17 TCGA-BR-7851-01 22 30951569 30951569 G A GAL3ST1 Nonsense_Mutation p.R215* 0.24 TCGA-BR-7851-01 22 31530004 31530004 C T INPP5J Missense_Mutation p.R506C 0.29 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BR-7851-01 22 36684826 36684826 G T MYH9 Missense_Mutation p.L1573M 0.31 probably_damaging(0.985) TCGA-BR-7851-01 22 37602749 37602749 C - SSTR3 Frame_Shift_Del p.G365Afs*6 0.36 TCGA-BR-7851-01 22 37603060 37603060 G A SSTR3 Silent p.A261A 0.22 TCGA-BR-7851-01 22 37771425 37771425 C T ELFN2 Silent p.P50P 0.32 TCGA-BR-7851-01 22 40657921 40657921 C T TNRC6B Silent p.G67G 0.21 TCGA-BR-7851-01 22 41195058 41195058 A - SLC25A17 Frame_Shift_Del p.L30Wfs*42 0.24 TCGA-BR-7851-01 22 41650402 41650402 C T RANGAP1 Silent p.E390E 0.26 TCGA-BR-7851-01 22 41723285 41723285 C T ZC3H7B Missense_Mutation p.R121C 0.27 deleterious(0) probably_damaging(1) TCGA-BR-7851-01 22 41919894 41919894 G A ACO2 Silent p.T477T 0.28 TCGA-BR-7851-01 22 42095566 42095566 G A MEI1 Silent p.T8T 0.29 TCGA-BR-7851-01 22 43606145 43606145 C T SCUBE1 Missense_Mutation p.A829T 0.34 tolerated(0.17) benign(0.005) TCGA-BR-7851-01 22 45928968 45928968 C T FBLN1 Silent p.C190C 0.26 TCGA-BR-7851-01 22 46785200 46785200 G A CELSR1 Missense_Mutation p.A2181V 0.08 tolerated(0.55) benign(0.1) TCGA-BR-7851-01 22 46930758 46930758 C T CELSR1 Silent p.S770S 0.27 TCGA-BR-7851-01 22 47054158 47054158 C T GRAMD4 Missense_Mutation p.R120W 0.33 deleterious(0) probably_damaging(0.967) TCGA-BR-7851-01 22 50279583 50279583 G A ZBED4 Missense_Mutation p.R758Q 0.34 deleterious(0.04) probably_damaging(0.98) TCGA-BR-7851-01 22 50661008 50661008 C T TUBGCP6 Missense_Mutation p.D762N 0.23 deleterious(0.03) possibly_damaging(0.518) TCGA-BR-7851-01 22 50686206 50686206 C A HDAC10 Splice_Site p.X446_splice 0.34 TCGA-BR-7851-01 22 50693747 50693747 C T MAPK12 Silent p.T301T 0.23 TCGA-BR-7851-01 22 50716356 50716356 G A PLXNB2 Silent p.F1658F 0.37 TCGA-BR-7851-01 22 50719833 50719833 G A PLXNB2 Silent p.I1206I 0.21 TCGA-BR-7851-01 22 50854560 50854560 T C PPP6R2 Silent p.L198L 0.22 TCGA-BR-7851-01 22 50885653 50885653 C T SBF1 Missense_Mutation p.R1867H 0.38 deleterious(0) probably_damaging(0.998) TCGA-BR-7851-01 22 51045086 51045086 A G MAPK8IP2 Missense_Mutation p.I708V 0.27 tolerated(0.11) benign(0.024) TCGA-BR-7851-01 2 102452431 102452432 - A MAP4K4 Frame_Shift_Ins p.W258Mfs*7 0.27 TCGA-BR-7851-01 2 103340288 103340288 C T MFSD9 Missense_Mutation p.G170R 0.24 deleterious(0) probably_damaging(1) TCGA-BR-7851-01 2 105885907 105885907 C T TGFBRAP1 Missense_Mutation p.R743H 0.27 tolerated(0.33) benign(0.005) TCGA-BR-7851-01 2 108863670 108863670 A G SULT1C3 Missense_Mutation p.N7S 0.20 tolerated(0.07) benign(0.187) TCGA-BR-7851-01 2 109405348 109405348 G A CCDC138 Silent p.S64S 0.23 TCGA-BR-7851-01 2 111789258 111789258 G A ACOXL Missense_Mutation p.V446M 0.22 tolerated(0.45) possibly_damaging(0.719) TCGA-BR-7851-01 2 112733042 112733042 T C MERTK Silent p.T379T 0.25 TCGA-BR-7851-01 2 113089407 113089407 C A ZC3H6 Missense_Mutation p.P971H 0.25 deleterious(0) probably_damaging(0.999) TCGA-BR-7851-01 2 114369758 114369758 C T RPL23AP7 RNA 0.14 TCGA-BR-7851-01 2 116534834 116534834 A G DPP10 Silent p.E428E 0.07 TCGA-BR-7851-01 2 120692467 120692467 G A PTPN4 Missense_Mutation p.E430K 0.27 tolerated(0.22) benign(0.035) TCGA-BR-7851-01 2 121743872 121743872 G A GLI2 Missense_Mutation p.G659R 0.30 deleterious(0.03) benign(0.435) TCGA-BR-7851-01 2 122154732 122154732 C T CLASP1 Missense_Mutation p.S1036N 0.15 deleterious(0) possibly_damaging(0.752) TCGA-BR-7851-01 2 133489555 133489555 C T NCKAP5 Missense_Mutation p.R1733H 0.23 deleterious(0) probably_damaging(0.988) TCGA-BR-7851-01 2 133542365 133542365 C T NCKAP5 Silent p.A673A 0.28 TCGA-BR-7851-01 2 136399348 136399348 A G R3HDM1 Missense_Mutation p.N488D 0.16 deleterious(0) probably_damaging(0.953) TCGA-BR-7851-01 2 141299356 141299356 G A LRP1B Missense_Mutation p.T2460I 0.28 possibly_damaging(0.507) TCGA-BR-7851-01 2 141680553 141680553 C T LRP1B Silent p.K1100K 0.16 TCGA-BR-7851-01 2 153471485 153471485 G A FMNL2 Missense_Mutation p.V395M 0.23 benign(0.234) TCGA-BR-7851-01 2 15694199 15694199 A G NBAS Silent p.H91H 0.09 TCGA-BR-7851-01 2 158300372 158300372 C A CYTIP Missense_Mutation p.R54L 0.27 deleterious(0) possibly_damaging(0.866) TCGA-BR-7851-01 2 160750520 160750520 T C LY75-CD302 Missense_Mutation p.H181R 0.41 deleterious(0) probably_damaging(0.923) TCGA-BR-7851-01 2 162711564 162711564 G T SLC4A10 Missense_Mutation p.L167F 0.16 deleterious(0) possibly_damaging(0.825) TCGA-BR-7851-01 2 163693269 163693270 - T KCNH7 Frame_Shift_Ins p.F29Ifs*22 0.28 TCGA-BR-7851-01 2 1639246 1639246 G A PXDN Silent p.A1418A 0.33 TCGA-BR-7851-01 2 166010981 166010981 T - SCN3A Frame_Shift_Del p.K454Sfs*22 0.24 TCGA-BR-7851-01 2 166535528 166535528 G T CSRNP3 Missense_Mutation p.E341D 0.18 tolerated(0.32) benign(0.001) TCGA-BR-7851-01 2 166911252 166911252 A C SCN1A Silent p.T166T 0.16 TCGA-BR-7851-01 2 167055217 167055217 C G SCN9A Missense_Mutation p.D1967H 0.24 tolerated_low_confidence(0.09) unknown(0) TCGA-BR-7851-01 2 170060632 170060632 T C LRP2 Missense_Mutation p.D2622G 0.18 benign(0.355) TCGA-BR-7851-01 2 172410001 172410001 T - CYBRD1 Frame_Shift_Del p.S185Pfs*2 0.24 TCGA-BR-7851-01 2 176947040 176947040 G A EVX2 Missense_Mutation p.R189W 0.27 deleterious(0.01) probably_damaging(1) TCGA-BR-7851-01 2 177033821 177033821 G C HOXD3 5'UTR 0.64 TCGA-BR-7851-01 2 17877642 17877642 G A SMC6 Nonsense_Mutation p.R816* 0.33 TCGA-BR-7851-01 2 179398049 179398049 C A TTN Silent p.T34431T 0.26 TCGA-BR-7851-01 2 179400960 179400960 A G TTN Missense_Mutation p.L33505P 0.26 TCGA-BR-7851-01 2 17946245 17946245 G A GEN1 Missense_Mutation p.A144T 0.21 deleterious(0) probably_damaging(0.967) TCGA-BR-7851-01 2 179479424 179479424 C A TTN Missense_Mutation p.G16273W 0.17 TCGA-BR-7851-01 2 179499476 179499476 A G TTN Missense_Mutation p.I14042T 0.28 TCGA-BR-7851-01 2 179982318 179982318 G A SESTD1 Nonsense_Mutation p.R489* 0.24 TCGA-BR-7851-01 2 182543295 182543295 C T NEUROD1 Missense_Mutation p.R98H 0.36 deleterious(0) probably_damaging(0.961) TCGA-BR-7851-01 2 186671708 186671708 C A FSIP2 Missense_Mutation p.P5981H 0.15 benign(0.004) TCGA-BR-7851-01 2 189851835 189851837 AGG - COL3A1 In_Frame_Del p.G168del 0.33 TCGA-BR-7851-01 2 190732629 190732629 A G PMS1 Missense_Mutation p.N816S 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-BR-7851-01 2 191301592 191301592 T G MFSD6 Nonsense_Mutation p.Y279* 0.28 TCGA-BR-7851-01 2 191898232 191898232 C A STAT4 Silent p.V612V 0.11 TCGA-BR-7851-01 2 198257723 198257723 T C SF3B1 Silent p.P1243P 0.17 TCGA-BR-7851-01 2 198268475 198268475 T C SF3B1 Missense_Mutation p.Q518R 0.22 deleterious(0.02) possibly_damaging(0.558) TCGA-BR-7851-01 2 200298107 200298107 C T SATB2 Silent p.A100A 0.26 TCGA-BR-7851-01 2 201857667 201857667 C T FAM126B Missense_Mutation p.R229Q 0.16 deleterious(0) probably_damaging(0.999) TCGA-BR-7851-01 2 202082435 202082435 C A CASP10 Missense_Mutation p.P514T 0.24 deleterious(0) probably_damaging(0.999) TCGA-BR-7851-01 2 202352566 202352566 T - ALS2CR11 Frame_Shift_Del p.V1745* 0.21 TCGA-BR-7851-01 2 202494478 202494478 C T TMEM237 Silent p.V217V 0.25 TCGA-BR-7851-01 2 202569184 202569184 G A ALS2 Missense_Mutation p.R1611W 0.29 deleterious(0) probably_damaging(1) TCGA-BR-7851-01 2 202899487 202899487 G T FZD7 Missense_Mutation p.K39N 0.26 tolerated(0.17) benign(0.001) TCGA-BR-7851-01 2 203384850 203384850 G A BMPR2 Nonsense_Mutation p.W298* 0.26 TCGA-BR-7851-01 2 20402653 20402653 G A SDC1 Silent p.C269C 0.04 TCGA-BR-7851-01 2 204193276 204193276 G - ABI2 Frame_Shift_Del p.G15Afs*33 0.19 TCGA-BR-7851-01 2 210993825 210993825 G A KANSL1L Missense_Mutation p.A387V 0.33 deleterious(0) probably_damaging(0.986) TCGA-BR-7851-01 2 21227276 21227276 G A APOB Silent p.T3984T 0.20 TCGA-BR-7851-01 2 21260067 21260067 C A APOB Missense_Mutation p.A200S 0.15 benign(0.138) TCGA-BR-7851-01 2 219558685 219558685 G A STK36 Missense_Mutation p.R772Q 0.31 tolerated(1) benign(0.004) TCGA-BR-7851-01 2 219736402 219736402 C T WNT6 Missense_Mutation p.A166V 0.23 tolerated(0.21) benign(0.11) TCGA-BR-7851-01 2 219895916 219895916 G T CCDC108 Silent p.P309P 0.40 TCGA-BR-7851-01 2 220037561 220037561 G - CNPPD1 Frame_Shift_Del p.P327Lfs*86 0.20 TCGA-BR-7851-01 2 220098595 220098595 C T ANKZF1 Silent p.L326L 0.24 TCGA-BR-7851-01 2 220162723 220162723 G A PTPRN Silent p.L591L 0.22 TCGA-BR-7851-01 2 220166399 220166399 C A PTPRN Missense_Mutation p.G346V 0.25 deleterious(0) possibly_damaging(0.703) TCGA-BR-7851-01 2 220371072 220371072 G A GMPPA Missense_Mutation p.D364N 0.29 tolerated(0.48) possibly_damaging(0.775) TCGA-BR-7851-01 2 220379398 220379398 G A ASIC4 Silent p.R111R 0.28 TCGA-BR-7851-01 2 220432935 220432935 C T OBSL1 Missense_Mutation p.R375H 0.39 deleterious(0.03) probably_damaging(0.997) TCGA-BR-7851-01 2 220504282 220504282 G - SLC4A3 Frame_Shift_Del p.L1064Sfs*24 0.26 TCGA-BR-7851-01 2 226447270 226447270 G A NYAP2 Silent p.S379S 0.27 TCGA-BR-7851-01 2 227729594 227729594 A - RHBDD1 Frame_Shift_Del p.D64Tfs*30 0.20 TCGA-BR-7851-01 2 228128641 228128641 G A COL4A3 Silent p.P432P 0.40 TCGA-BR-7851-01 2 230659897 230659897 G A TRIP12 Silent p.G1247G 0.19 TCGA-BR-7851-01 2 230673018 230673018 A T TRIP12 Missense_Mutation p.D715E 0.27 tolerated(1) benign(0.002) TCGA-BR-7851-01 2 230911029 230911029 G A SLC16A14 Silent p.A271A 0.28 TCGA-BR-7851-01 2 231775360 231775360 G A GPR55 Silent p.Y106Y 0.32 TCGA-BR-7851-01 2 232373778 232373778 C - LINC00471 RNA 0.21 TCGA-BR-7851-01 2 233246071 233246071 G A ALPP Missense_Mutation p.E435K 0.13 tolerated(0.17) benign(0.009) TCGA-BR-7851-01 2 233323406 233323406 G A ALPI Silent p.P416P 0.11 TCGA-BR-7851-01 2 234622109 234622109 G A UGT1A5 Missense_Mutation p.A158T 0.40 deleterious(0) benign(0.184) TCGA-BR-7851-01 2 235404797 235404797 G A ARL4C Missense_Mutation p.A145V 0.20 deleterious(0) probably_damaging(0.983) TCGA-BR-7851-01 2 236649677 236649677 C - AGAP1 Frame_Shift_Del p.P129Rfs*22 0.19 TCGA-BR-7851-01 2 236706491 236706491 C T AGAP1 Silent p.S254S 0.18 TCGA-BR-7851-01 2 238672491 238672491 A G LRRFIP1 Missense_Mutation p.Q712R 0.16 tolerated(0.36) benign(0.119) TCGA-BR-7851-01 2 239234487 239234487 T C TRAF3IP1 Missense_Mutation p.I77T 0.08 deleterious(0) possibly_damaging(0.647) TCGA-BR-7851-01 2 240981360 240981360 C T PRR21 Missense_Mutation p.R347H 0.08 tolerated_low_confidence(0.29) unknown(0) TCGA-BR-7851-01 2 240982089 240982089 G A PRR21 Missense_Mutation p.T104M 0.13 deleterious_low_confidence(0.01) unknown(0) TCGA-BR-7851-01 2 242135234 242135234 C T ANO7 Missense_Mutation p.R149C 0.37 tolerated(0.05) benign(0.015) TCGA-BR-7851-01 2 27164917 27164917 G A DPYSL5 Missense_Mutation p.G397R 0.27 deleterious(0) probably_damaging(1) TCGA-BR-7851-01 2 27263303 27263303 C T TMEM214 Silent p.L628L 0.26 TCGA-BR-7851-01 2 27317386 27317386 G A KHK Missense_Mutation p.R84H 0.25 deleterious(0.04) benign(0) TCGA-BR-7851-01 2 27430334 27430334 G A SLC5A6 Missense_Mutation p.A62V 0.28 deleterious(0) probably_damaging(0.999) TCGA-BR-7851-01 2 27500791 27500791 G A DNAJC5G Missense_Mutation p.D95N 0.28 deleterious(0.05) benign(0.331) TCGA-BR-7851-01 2 30756096 30756096 C A LCLAT1 Missense_Mutation p.L132M 0.21 deleterious(0) probably_damaging(0.996) TCGA-BR-7851-01 2 3196254 3196254 G A TSSC1 Missense_Mutation p.S307L 0.20 deleterious(0) possibly_damaging(0.885) TCGA-BR-7851-01 2 32640462 32640462 G A BIRC6 Silent p.P701P 0.30 TCGA-BR-7851-01 2 32750641 32750641 G A BIRC6 Missense_Mutation p.A3956T 0.24 benign(0.022) TCGA-BR-7851-01 2 36771623 36771623 A G CRIM1 Missense_Mutation p.I910V 0.24 tolerated(0.4) benign(0.016) TCGA-BR-7851-01 2 37347260 37347260 T C EIF2AK2 Missense_Mutation p.I364V 0.34 deleterious(0.01) probably_damaging(0.976) TCGA-BR-7851-01 2 37520360 37520360 C T PRKD3 Missense_Mutation p.D115N 0.07 tolerated(0.16) benign(0.077) TCGA-BR-7851-01 2 43019685 43019685 C A HAAO 5'UTR 0.24 TCGA-BR-7851-01 2 43973086 43973086 C T PLEKHH2 Silent p.L1213L 0.21 TCGA-BR-7851-01 2 44459529 44459529 A - PPM1B 3'Flank 0.16 TCGA-BR-7851-01 2 47403616 47403616 A G CALM2 5'UTR 0.14 TCGA-BR-7851-01 2 54858182 54858182 G A SPTBN1 Missense_Mutation p.G1000S 0.21 tolerated(0.07) possibly_damaging(0.832) TCGA-BR-7851-01 2 58431275 58431275 A G FANCL Missense_Mutation p.L154S 0.17 deleterious(0) probably_damaging(0.949) TCGA-BR-7851-01 2 61259029 61259029 T C PEX13 Missense_Mutation p.Y190H 0.16 deleterious(0.04) probably_damaging(0.943) TCGA-BR-7851-01 2 63283462 63283462 G A OTX1 3'UTR 0.21 TCGA-BR-7851-01 2 70037735 70037735 G T ANXA4 Missense_Mutation p.R136L 0.36 deleterious(0.01) benign(0.028) TCGA-BR-7851-01 2 71577133 71577133 G A ZNF638 Missense_Mutation p.R350Q 0.36 tolerated(0.05) benign(0.104) TCGA-BR-7851-01 2 73800368 73800368 C T ALMS1 Silent p.A3787A 0.06 TCGA-BR-7851-01 2 74044060 74044060 T A C2orf78 Missense_Mutation p.F904I 0.56 tolerated(0.16) benign(0.187) TCGA-BR-7851-01 2 74307623 74307623 A G TET3 Splice_Site p.X727_splice 0.21 TCGA-BR-7851-01 2 74592756 74592756 C T DCTN1 Missense_Mutation p.R972Q 0.21 deleterious(0) probably_damaging(0.922) TCGA-BR-7851-01 2 74907036 74907036 C T SEMA4F Silent p.L671L 0.22 TCGA-BR-7851-01 2 79349995 79349995 C - REG1A Frame_Shift_Del p.L118Wfs*21 0.17 TCGA-BR-7851-01 2 84811253 84811253 G A DNAH6 Missense_Mutation p.R787Q 0.32 tolerated(0.19) benign(0.01) TCGA-BR-7851-01 2 87016520 87016520 T C CD8A Missense_Mutation p.Y184C 0.16 deleterious(0) probably_damaging(0.976) TCGA-BR-7851-01 2 89036154 89036155 - G RPIA Frame_Shift_Ins p.V236Rfs*3 0.24 TCGA-BR-7851-01 2 90122135 90122135 C A IGKV1D-17 3'Flank 0.15 TCGA-BR-7851-01 2 90458663 90458663 T C CH17-132F21.1 Silent p.S113S 0.03 TCGA-BR-7851-01 2 9463332 9463332 G A ASAP2 Missense_Mutation p.E185K 0.15 deleterious(0) probably_damaging(0.969) TCGA-BR-7851-01 2 9581993 9581993 C A CPSF3 Missense_Mutation p.S328Y 0.15 deleterious(0) probably_damaging(0.999) TCGA-BR-7851-01 2 96993744 96993744 C T ITPRIPL1 Missense_Mutation p.R467W 0.22 deleterious(0.04) benign(0.014) TCGA-BR-7851-01 2 97368797 97368797 C - LMAN2L 3'Flank 0.15 TCGA-BR-7851-01 2 97368926 97368926 C T LMAN2L 3'Flank 0.17 TCGA-BR-7851-01 2 97755974 97755974 C A FAHD2B Missense_Mutation p.G112C 0.27 deleterious(0) probably_damaging(0.999) TCGA-BR-7851-01 2 98376193 98376193 C T TMEM131 Missense_Mutation p.V1710I 0.46 tolerated_low_confidence(1) benign(0) TCGA-BR-7851-01 2 98928687 98928687 G A VWA3B Missense_Mutation p.A1254T 0.45 tolerated_low_confidence(0.61) benign(0.005) TCGA-BR-7851-01 3 100963396 100963397 TT - IMPG2 Frame_Shift_Del p.K593Rfs*5 0.29 TCGA-BR-7851-01 3 10157383 10157383 G A BRK1 5'UTR 0.26 TCGA-BR-7851-01 3 10382254 10382254 C T ATP2B2 Missense_Mutation p.G1018S 0.37 deleterious(0) probably_damaging(1) TCGA-BR-7851-01 3 10382279 10382279 G A ATP2B2 Silent p.N1009N 0.24 TCGA-BR-7851-01 3 111659400 111659400 A - PHLDB2 Frame_Shift_Del p.K770Sfs*18 0.10 TCGA-BR-7851-01 3 113331030 113331030 G A SIDT1 Missense_Mutation p.R652H 0.43 deleterious(0) benign(0.351) TCGA-BR-7851-01 3 118621386 118621386 C T IGSF11 Missense_Mutation p.R426Q 0.22 tolerated(0.51) probably_damaging(0.997) TCGA-BR-7851-01 3 121260276 121260276 G A POLQ Missense_Mutation p.R132W 0.04 deleterious(0) probably_damaging(0.995) TCGA-BR-7851-01 3 124393214 124393214 G A KALRN Missense_Mutation p.D656N 0.17 tolerated(0.12) possibly_damaging(0.619) TCGA-BR-7851-01 3 124515302 124515302 C A ITGB5 Missense_Mutation p.K542N 0.21 tolerated(0.19) benign(0.006) TCGA-BR-7851-01 3 124716537 124716537 G A HEG1 Silent p.C1216C 0.30 TCGA-BR-7851-01 3 126207085 126207085 G A UROC1 Silent p.R642R 0.22 TCGA-BR-7851-01 3 127292484 127292484 C T TPRA1 Silent p.S334S 0.36 TCGA-BR-7851-01 3 127323819 127323819 G A MCM2 Missense_Mutation p.E165K 0.24 tolerated(0.07) possibly_damaging(0.523) TCGA-BR-7851-01 3 127327353 127327353 C T MCM2 Silent p.D410D 0.37 TCGA-BR-7851-01 3 128181388 128181388 G A DNAJB8 3'UTR 0.33 TCGA-BR-7851-01 3 128690075 128690075 C T KIAA1257 Missense_Mutation p.R408Q 0.38 tolerated_low_confidence(0.41) benign(0.083) TCGA-BR-7851-01 3 129231234 129231234 C - IFT122 Frame_Shift_Del p.S1042Rfs*6 0.20 TCGA-BR-7851-01 3 132438662 132438662 T - NPHP3 Frame_Shift_Del p.T136Rfs*13 0.16 TCGA-BR-7851-01 3 134086562 134086562 G - AMOTL2 Frame_Shift_Del p.P273Lfs*13 0.14 TCGA-BR-7851-01 3 137787001 137787001 G T DZIP1L Silent p.P608P 0.07 TCGA-BR-7851-01 3 140178491 140178491 G A CLSTN2 Missense_Mutation p.D368N 0.23 tolerated(0.21) benign(0.099) TCGA-BR-7851-01 3 141295906 141295906 C T RASA2 Silent p.A516A 0.26 TCGA-BR-7851-01 3 14523278 14523278 C A SLC6A6 Missense_Mutation p.L551I 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-BR-7851-01 3 147130352 147130352 G A ZIC1 Missense_Mutation p.A344T 0.34 deleterious(0.02) probably_damaging(0.998) TCGA-BR-7851-01 3 148763957 148763957 C T HLTF Missense_Mutation p.R661H 0.35 deleterious(0) probably_damaging(1) TCGA-BR-7851-01 3 15137584 15137584 A C ZFYVE20 Missense_Mutation p.L15R 0.18 deleterious(0) probably_damaging(0.996) TCGA-BR-7851-01 3 151598716 151598716 C T SUCNR1 Nonsense_Mutation p.R129* 0.16 TCGA-BR-7851-01 3 156396200 156396200 C T TIPARP Silent p.N238N 0.33 TCGA-BR-7851-01 3 160083873 160083873 C T IFT80 Silent p.Q169Q 0.05 TCGA-BR-7851-01 3 160132162 160132162 A G SMC4 Missense_Mutation p.N377D 0.16 tolerated(0.74) benign(0.001) TCGA-BR-7851-01 3 165548598 165548599 TG - BCHE Frame_Shift_Del p.Q75Vfs*7 0.19 TCGA-BR-7851-01 3 167223102 167223102 T - WDR49 Frame_Shift_Del p.K607Nfs*9 0.18 TCGA-BR-7851-01 3 168838893 168838893 C T MECOM Silent p.S238S 0.27 TCGA-BR-7851-01 3 169863295 169863295 G A PHC3 Silent p.P196P 0.22 TCGA-BR-7851-01 3 170198569 170198569 T G SLC7A14 Missense_Mutation p.K501T 0.04 tolerated(0.4) benign(0.027) TCGA-BR-7851-01 3 170624844 170624844 T - EIF5A2 Frame_Shift_Del p.K68Nfs*24 0.17 TCGA-BR-7851-01 3 178748762 178748762 C T ZMAT3 Missense_Mutation p.R99Q 0.29 deleterious(0.01) benign(0.342) TCGA-BR-7851-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.32 tolerated(0.11) possibly_damaging(0.529) TCGA-BR-7851-01 3 180680862 180680862 T C FXR1 Silent p.N394N 0.27 TCGA-BR-7851-01 3 183551589 183551589 C T PARL Missense_Mutation p.A285T 0.39 deleterious(0) benign(0.2) TCGA-BR-7851-01 3 183900562 183900562 G A AP2M1 Missense_Mutation p.G360D 0.13 deleterious(0) probably_damaging(0.988) TCGA-BR-7851-01 3 184049755 184049755 A G EIF4G1 Missense_Mutation p.D1507G 0.25 deleterious(0) possibly_damaging(0.731) TCGA-BR-7851-01 3 184298288 184298288 C T EPHB3 Silent p.R757R 0.04 TCGA-BR-7851-01 3 184298382 184298382 G A EPHB3 Missense_Mutation p.D789N 0.22 tolerated(0.07) benign(0.032) TCGA-BR-7851-01 3 185434497 185434497 T C C3orf65 Silent p.H110H 0.22 TCGA-BR-7851-01 3 185643365 185643365 G A TRA2B Missense_Mutation p.R74C 0.26 deleterious_low_confidence(0.04) unknown(0) TCGA-BR-7851-01 3 192125845 192125845 G A FGF12 Silent p.S56S 0.36 TCGA-BR-7851-01 3 193151640 193151640 C T ATP13A4 Missense_Mutation p.V946I 0.25 tolerated(0.19) benign(0.002) TCGA-BR-7851-01 3 194062823 194062823 G A CPN2 Silent p.N203N 0.49 TCGA-BR-7851-01 3 194118638 194118638 T C GP5 Missense_Mutation p.E125G 0.30 deleterious(0) probably_damaging(0.995) TCGA-BR-7851-01 3 195000079 195000079 T C ACAP2 Missense_Mutation p.Q772R 0.06 tolerated(0.27) benign(0.045) TCGA-BR-7851-01 3 195955038 195955038 G - SLC51A Frame_Shift_Del p.K141Rfs*5 0.25 TCGA-BR-7851-01 3 196210722 196210722 T C RNF168 Missense_Mutation p.N200S 0.45 tolerated(0.48) benign(0.009) TCGA-BR-7851-01 3 197670888 197670889 - T IQCG Frame_Shift_Ins p.V15Sfs*5 0.23 TCGA-BR-7851-01 3 27161345 27161345 A T NEK10 Silent p.S1089S 0.32 TCGA-BR-7851-01 3 32860341 32860341 G A TRIM71 Missense_Mutation p.G257R 0.35 tolerated(0.1) benign(0.007) TCGA-BR-7851-01 3 32932739 32932739 G A TRIM71 Silent p.T681T 0.35 TCGA-BR-7851-01 3 33114135 33114135 C T GLB1 Missense_Mutation p.R49H 0.14 deleterious(0.01) possibly_damaging(0.498) TCGA-BR-7851-01 3 36485095 36485095 G T STAC Missense_Mutation p.K117N 0.27 deleterious(0) probably_damaging(0.959) TCGA-BR-7851-01 3 37560809 37560809 T C ITGA9 Silent p.H400H 0.33 TCGA-BR-7851-01 3 38035202 38035202 C T VILL Silent p.G13G 0.31 TCGA-BR-7851-01 3 38167150 38167150 G - ACAA1 Frame_Shift_Del p.L369Wfs*7 0.20 TCGA-BR-7851-01 3 38949441 38949441 T - SCN11A Frame_Shift_Del p.K491Sfs*5 0.27 TCGA-BR-7851-01 3 40503441 40503441 A G RPL14 Missense_Mutation p.I122M 0.38 deleterious(0.05) possibly_damaging(0.771) TCGA-BR-7851-01 3 42244237 42244237 G A TRAK1 Silent p.P579P 0.44 TCGA-BR-7851-01 3 42684075 42684075 T C NKTR Missense_Mutation p.Y1377H 0.19 deleterious_low_confidence(0.01) unknown(0) TCGA-BR-7851-01 3 42798652 42798652 G A CCDC13 Silent p.D92D 0.32 TCGA-BR-7851-01 3 43390026 43390026 G A SNRK Missense_Mutation p.A759T 0.30 tolerated_low_confidence(0.54) benign(0.001) TCGA-BR-7851-01 3 44948665 44948665 A G TGM4 Missense_Mutation p.I434V 0.08 deleterious(0.04) benign(0.346) TCGA-BR-7851-01 3 45436077 45436077 G A LARS2 Silent p.T44T 0.33 TCGA-BR-7851-01 3 47033984 47033984 C T NBEAL2 Missense_Mutation p.A351V 0.53 tolerated(0.52) benign(0.008) TCGA-BR-7851-01 3 47043424 47043424 C A NBEAL2 Silent p.A1599A 0.22 TCGA-BR-7851-01 3 47450550 47450550 G A PTPN23 Missense_Mutation p.A539T 0.31 unknown(0) TCGA-BR-7851-01 3 47450718 47450718 C T PTPN23 Missense_Mutation p.R570C 0.07 unknown(0) TCGA-BR-7851-01 3 48419900 48419900 A - FBXW12 Frame_Shift_Del p.T169Lfs*36 0.22 TCGA-BR-7851-01 3 48691723 48691723 T C CELSR3 Silent p.A1717A 0.09 TCGA-BR-7851-01 3 49168865 49168865 C T LAMB2 Missense_Mutation p.R220H 0.26 deleterious(0) probably_damaging(0.989) TCGA-BR-7851-01 3 49308822 49308822 C T C3orf62 Missense_Mutation p.E199K 0.34 deleterious(0.01) possibly_damaging(0.726) TCGA-BR-7851-01 3 49457752 49457752 G A AMT Silent p.N121N 0.29 TCGA-BR-7851-01 3 49765665 49765665 G A IP6K1 Silent p.C221C 0.28 TCGA-BR-7851-01 3 50099450 50099450 A - RBM6 Frame_Shift_Del p.K834Nfs*27 0.24 TCGA-BR-7851-01 3 50212595 50212595 C T SEMA3F Missense_Mutation p.R175C 0.27 tolerated(0.18) possibly_damaging(0.498) TCGA-BR-7851-01 3 50219760 50219760 T C SEMA3F Silent p.T229T 0.28 TCGA-BR-7851-01 3 50324596 50324596 G A LSMEM2 Missense_Mutation p.R153Q 0.27 tolerated(0.09) probably_damaging(0.997) TCGA-BR-7851-01 3 50330806 50330806 C T HYAL3 Missense_Mutation p.M375I 0.20 tolerated(0.2) benign(0.017) TCGA-BR-7851-01 3 50655080 50655080 G - MAPKAPK3 Frame_Shift_Del p.R31Gfs*9 0.22 TCGA-BR-7851-01 3 51664313 51664313 C T RAD54L2 Silent p.D169D 0.32 TCGA-BR-7851-01 3 52263163 52263163 G T TWF2 Missense_Mutation p.H313N 0.19 deleterious(0) probably_damaging(0.922) TCGA-BR-7851-01 3 52469715 52469715 C T SEMA3G Silent p.R751R 0.18 TCGA-BR-7851-01 3 52475046 52475046 G A SEMA3G Missense_Mutation p.R278W 0.27 deleterious(0) probably_damaging(1) TCGA-BR-7851-01 3 52524146 52524146 C - NISCH Frame_Shift_Del p.P1172Qfs*5 0.30 TCGA-BR-7851-01 3 52678784 52678784 T - PBRM1 Frame_Shift_Del p.I279Yfs*4 0.29 TCGA-BR-7851-01 3 53913991 53913991 C T ACTR8 Missense_Mutation p.S90N 0.18 tolerated(0.39) benign(0.001) TCGA-BR-7851-01 3 56657581 56657581 G A FAM208A 3'UTR 0.22 TCGA-BR-7851-01 3 57283436 57283436 G A APPL1 Silent p.T304T 0.29 TCGA-BR-7851-01 3 58089787 58089788 - G FLNB Frame_Shift_Ins p.H532Tfs*9 0.21 TCGA-BR-7851-01 3 58097960 58097960 C T FLNB Missense_Mutation p.P887L 0.33 tolerated(0.07) benign(0.012) TCGA-BR-7851-01 3 58382815 58382815 C T PXK Missense_Mutation p.A291V 0.05 deleterious(0.02) possibly_damaging(0.493) TCGA-BR-7851-01 3 62189010 62189010 C T PTPRG Missense_Mutation p.T514M 0.23 deleterious(0) possibly_damaging(0.892) TCGA-BR-7851-01 3 64084973 64084973 G A PRICKLE2 Silent p.D763D 0.16 TCGA-BR-7851-01 3 6903441 6903441 C T GRM7 Silent p.F122F 0.38 TCGA-BR-7851-01 3 69987151 69987151 C T MITF Missense_Mutation p.P178L 0.21 deleterious(0) probably_damaging(1) TCGA-BR-7851-01 3 77617524 77617524 T C ROBO2 Missense_Mutation p.V653A 0.15 deleterious(0.01) possibly_damaging(0.452) TCGA-BR-7851-01 3 78734947 78734947 A C ROBO1 Missense_Mutation p.L431V 0.56 tolerated(0.22) probably_damaging(0.996) TCGA-BR-7851-01 3 8787245 8787245 G A CAV3 Missense_Mutation p.G50S 0.21 deleterious(0.04) probably_damaging(1) TCGA-BR-7851-01 3 9786026 9786027 - A BRPF1 Frame_Shift_Ins p.N920Kfs*33 0.25 TCGA-BR-7851-01 3 98251487 98251487 T - GPR15 Frame_Shift_Del p.F205Lfs*5 0.31 TCGA-BR-7851-01 4 100512480 100512480 C T MTTP Missense_Mutation p.A197V 0.27 tolerated(0.26) benign(0.002) TCGA-BR-7851-01 4 110670666 110670666 G A CFI Nonsense_Mutation p.R345* 0.30 TCGA-BR-7851-01 4 110765294 110765294 G A RRH Missense_Mutation p.V319M 0.28 tolerated_low_confidence(0.07) benign(0.013) TCGA-BR-7851-01 4 110866263 110866263 C T EGF Missense_Mutation p.R258C 0.19 tolerated(0.09) benign(0.005) TCGA-BR-7851-01 4 113544979 113544979 G A C4orf21 Silent p.C52C 0.28 TCGA-BR-7851-01 4 114158328 114158328 G T ANK2 Missense_Mutation p.K223N 0.35 probably_damaging(1) TCGA-BR-7851-01 4 119948118 119948118 G A SYNPO2 Silent p.E198E 0.37 TCGA-BR-7851-01 4 122737549 122737549 T C EXOSC9 Silent p.S411S 0.38 TCGA-BR-7851-01 4 1231955 1231955 G A CTBP1 Intron 0.25 TCGA-BR-7851-01 4 126336508 126336508 T A FAT4 Silent p.G2130G 0.23 TCGA-BR-7851-01 4 126336623 126336623 A G FAT4 Missense_Mutation p.T2169A 0.16 possibly_damaging(0.867) TCGA-BR-7851-01 4 128842780 128842780 C T MFSD8 Missense_Mutation p.A417T 0.32 tolerated(0.23) possibly_damaging(0.792) TCGA-BR-7851-01 4 128863292 128863292 G A MFSD8 Missense_Mutation p.S154L 0.19 deleterious(0) probably_damaging(0.955) TCGA-BR-7851-01 4 1309205 1309205 C T MAEA Silent p.A91A 0.28 TCGA-BR-7851-01 4 1321484 1321484 G A MAEA Missense_Mutation p.A217T 0.23 deleterious(0) probably_damaging(0.983) TCGA-BR-7851-01 4 13604573 13604573 G T BOD1L1 Silent p.T1317T 0.15 TCGA-BR-7851-01 4 140454490 140454490 G T SETD7 Silent p.A67A 0.60 TCGA-BR-7851-01 4 140641218 140641218 G A MAML3 Silent p.I892I 0.03 TCGA-BR-7851-01 4 141598220 141598220 C T TBC1D9 Missense_Mutation p.R296H 0.27 deleterious(0.01) probably_damaging(0.998) TCGA-BR-7851-01 4 142143532 142143532 A - ZNF330 Frame_Shift_Del p.K5Rfs*18 0.31 TCGA-BR-7851-01 4 145916685 145916685 C T ANAPC10 Missense_Mutation p.R133H 0.28 tolerated(0.1) benign(0.014) TCGA-BR-7851-01 4 146041302 146041302 A T ABCE1 Missense_Mutation p.N381Y 0.33 deleterious(0) probably_damaging(0.997) TCGA-BR-7851-01 4 146824250 146824250 A G ZNF827 Missense_Mutation p.L54S 0.20 deleterious(0) probably_damaging(0.984) TCGA-BR-7851-01 4 149356399 149356399 C A NR3C2 Silent p.S538S 0.23 TCGA-BR-7851-01 4 153244281 153244281 C T FBXW7 Missense_Mutation p.A626T 0.24 deleterious(0) probably_damaging(1) TCGA-BR-7851-01 4 153258983 153258983 G A FBXW7 Nonsense_Mutation p.R278* 0.22 TCGA-BR-7851-01 4 153897017 153897019 TGT - FHDC1 In_Frame_Del p.V860del 0.26 TCGA-BR-7851-01 4 15780067 15780067 C T CD38 Silent p.S10S 0.21 TCGA-BR-7851-01 4 158284174 158284174 G A GRIA2 Missense_Mutation p.G877D 0.28 deleterious_low_confidence(0) possibly_damaging(0.747) TCGA-BR-7851-01 4 162307362 162307362 G A FSTL5 Missense_Mutation p.T694M 0.20 tolerated(0.13) probably_damaging(0.993) TCGA-BR-7851-01 4 169317201 169317201 A G DDX60L Missense_Mutation p.L1189P 0.24 deleterious(0.04) possibly_damaging(0.594) TCGA-BR-7851-01 4 1730104 1730104 C T TACC3 Silent p.G325G 0.26 TCGA-BR-7851-01 4 173734826 173734826 T A GALNTL6 Missense_Mutation p.I292N 0.25 deleterious(0) probably_damaging(1) TCGA-BR-7851-01 4 183714319 183714319 G A TENM3 Missense_Mutation p.S2165N 0.42 tolerated(0.09) possibly_damaging(0.483) TCGA-BR-7851-01 4 184585065 184585065 G A TRAPPC11 Silent p.R15R 0.51 TCGA-BR-7851-01 4 185350182 185350182 C A IRF2 Nonsense_Mutation p.E13* 0.36 TCGA-BR-7851-01 4 185678331 185678331 C T ACSL1 Missense_Mutation p.R682Q 0.40 tolerated(0.07) benign(0.021) TCGA-BR-7851-01 4 187510153 187510153 C T FAT1 Missense_Mutation p.E4454K 0.30 possibly_damaging(0.53) TCGA-BR-7851-01 4 187524086 187524086 C T FAT1 Missense_Mutation p.C3818Y 0.32 possibly_damaging(0.677) TCGA-BR-7851-01 4 187557823 187557823 C T FAT1 Silent p.E1296E 0.19 TCGA-BR-7851-01 4 189064957 189064957 C T TRIML1 Intron 0.17 TCGA-BR-7851-01 4 1955098 1955098 C T WHSC1 Missense_Mutation p.R729C 0.31 deleterious(0) probably_damaging(0.999) TCGA-BR-7851-01 4 248326 248326 G A ZNF876P RNA 0.62 TCGA-BR-7851-01 4 25314435 25314435 G A ZCCHC4 Missense_Mutation p.A2T 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.811) TCGA-BR-7851-01 4 25419249 25419249 A C ANAPC4 Missense_Mutation p.Q696P 0.06 tolerated(0.07) possibly_damaging(0.826) TCGA-BR-7851-01 4 25672389 25672389 A G SLC34A2 Silent p.A287A 0.35 TCGA-BR-7851-01 4 2632718 2632718 A G FAM193A 5'UTR 0.15 TCGA-BR-7851-01 4 26432370 26432370 G T RBPJ Missense_Mutation p.W415L 0.31 deleterious(0) probably_damaging(0.942) TCGA-BR-7851-01 4 26483729 26483729 T A CCKAR Missense_Mutation p.K273M 0.17 tolerated(0.11) benign(0.409) TCGA-BR-7851-01 4 2664886 2664886 A T FAM193A Missense_Mutation p.E359D 0.24 tolerated(0.06) probably_damaging(0.979) TCGA-BR-7851-01 4 3201628 3201628 C T HTT Silent p.T1846T 0.29 TCGA-BR-7851-01 4 37636682 37636682 C - RELL1 Frame_Shift_Del p.T170Rfs*34 0.20 TCGA-BR-7851-01 4 3768921 3768921 C T ADRA2C Silent p.G196G 0.30 TCGA-BR-7851-01 4 38690460 38690460 A - KLF3 Frame_Shift_Del p.K106Nfs*21 0.22 TCGA-BR-7851-01 4 39324961 39324961 T - RFC1 Frame_Shift_Del p.K240Rfs*19 0.26 TCGA-BR-7851-01 4 39921982 39921982 A C PDS5A Missense_Mutation p.L231R 0.29 deleterious(0) probably_damaging(0.998) TCGA-BR-7851-01 4 40440364 40440364 C T RBM47 Missense_Mutation p.V183I 0.28 tolerated(0.12) benign(0.372) TCGA-BR-7851-01 4 466480 466480 G A ZNF721 5'UTR 0.06 TCGA-BR-7851-01 4 4864851 4864851 G A MSX1 Missense_Mutation p.S298N 0.31 tolerated(0.06) possibly_damaging(0.723) TCGA-BR-7851-01 4 54319243 54319243 G A FIP1L1 Missense_Mutation p.R481H 0.19 tolerated(0.09) probably_damaging(0.992) TCGA-BR-7851-01 4 56858229 56858229 A - CEP135 Frame_Shift_Del p.T664Qfs*3 0.12 TCGA-BR-7851-01 4 57335842 57335842 G A SRP72 Missense_Mutation p.V45I 0.22 tolerated(0.18) benign(0.009) TCGA-BR-7851-01 4 5961245 5961245 A C C4orf50 Missense_Mutation p.C704G 0.30 tolerated(0.12) benign(0.009) TCGA-BR-7851-01 4 66535318 66535318 G A EPHA5 Missense_Mutation p.A48V 0.14 tolerated(0.53) possibly_damaging(0.483) TCGA-BR-7851-01 4 68928451 68928451 T C TMPRSS11F Intron 0.43 TCGA-BR-7851-01 4 71467163 71467164 - A AMBN Frame_Shift_Ins p.P109Tfs*64 0.21 TCGA-BR-7851-01 4 71510476 71510476 C G ENAM Missense_Mutation p.D1111E 0.19 tolerated(0.08) possibly_damaging(0.769) TCGA-BR-7851-01 4 71527831 71527831 C T IGJ Missense_Mutation p.V56M 0.23 deleterious(0.01) possibly_damaging(0.691) TCGA-BR-7851-01 4 72215771 72215772 TC - SLC4A4 Frame_Shift_Del p.L179Pfs*9 0.23 TCGA-BR-7851-01 4 72222756 72222756 C T SLC4A4 Silent p.G194G 0.05 TCGA-BR-7851-01 4 73962877 73962877 G A ANKRD17 Missense_Mutation p.R1712C 0.20 possibly_damaging(0.72) TCGA-BR-7851-01 4 73990925 73990925 G A ANKRD17 Silent p.D1113D 0.38 TCGA-BR-7851-01 4 74124065 74124065 G A ANKRD17 Silent p.G107G 0.21 TCGA-BR-7851-01 4 74313372 74313372 A - AFP Frame_Shift_Del p.N348Ifs*22 0.23 TCGA-BR-7851-01 4 76877153 76877153 T - SDAD1 Frame_Shift_Del p.N664Ifs*17 0.30 TCGA-BR-7851-01 4 8021969 8021969 G - ABLIM2 Frame_Shift_Del p.S444Pfs*17 0.18 TCGA-BR-7851-01 4 81967637 81967637 G T BMP3 Missense_Mutation p.Q354H 0.22 deleterious(0) benign(0.078) TCGA-BR-7851-01 4 8293207 8293207 C T HTRA3 Silent p.I273I 0.33 TCGA-BR-7851-01 4 84231184 84231184 T C HPSE Missense_Mutation p.H297R 0.15 deleterious(0.03) probably_damaging(0.982) TCGA-BR-7851-01 4 84384689 84384689 G A FAM175A Nonsense_Mutation p.R252* 0.28 TCGA-BR-7851-01 4 88243791 88243791 A T HSD17B13 Missense_Mutation p.I68N 0.28 deleterious(0) probably_damaging(0.996) TCGA-BR-7851-01 4 88293942 88293942 A G HSD17B11 Missense_Mutation p.M159T 0.07 deleterious(0) probably_damaging(1) TCGA-BR-7851-01 4 89036197 89036197 C T ABCG2 Silent p.E285E 0.16 TCGA-BR-7851-01 4 944254 944254 G A TMEM175 Missense_Mutation p.V80I 0.36 tolerated(0.13) benign(0.243) TCGA-BR-7851-01 5 112203173 112203173 C G SRP19 Missense_Mutation p.A125G 0.12 tolerated(1) benign(0.001) TCGA-BR-7851-01 5 121355987 121355987 A - SRFBP1 Frame_Shift_Del p.I188* 0.29 TCGA-BR-7851-01 5 122926231 122926231 T C CSNK1G3 Silent p.Y323Y 0.08 TCGA-BR-7851-01 5 124036756 124036756 A C ZNF608 Silent p.P371P 0.29 TCGA-BR-7851-01 5 129015539 129015539 C T ADAMTS19 Silent p.T857T 0.36 TCGA-BR-7851-01 5 132100012 132100012 C T SEPT8 Missense_Mutation p.R84Q 0.17 tolerated(0.3) benign(0.056) TCGA-BR-7851-01 5 134010443 134010443 G A SEC24A Missense_Mutation p.S319N 0.33 tolerated(0.22) benign(0.005) TCGA-BR-7851-01 5 134077003 134077003 G A CAMLG Silent p.A141A 0.31 TCGA-BR-7851-01 5 1344507 1344507 G A CLPTM1L Silent p.V74V 0.26 TCGA-BR-7851-01 5 136974736 136974736 C T KLHL3 Silent p.T375T 0.24 TCGA-BR-7851-01 5 13759008 13759008 C T DNAH5 Missense_Mutation p.A3456T 0.24 possibly_damaging(0.787) TCGA-BR-7851-01 5 139251400 139251400 C T NRG2 Missense_Mutation p.G340R 0.43 tolerated(0.06) probably_damaging(0.98) TCGA-BR-7851-01 5 139941484 139941484 G A APBB3 Intron 0.36 TCGA-BR-7851-01 5 140054656 140054658 CTT - HARS In_Frame_Del p.K419del 0.22 TCGA-BR-7851-01 5 140167916 140167916 C T PCDHA1 Missense_Mutation p.R681W 0.25 deleterious_low_confidence(0.02) benign(0.043) TCGA-BR-7851-01 5 140181497 140181497 G A PCDHA3 Missense_Mutation p.A239T 0.16 deleterious_low_confidence(0.04) benign(0.334) TCGA-BR-7851-01 5 140188275 140188276 GC - PCDHA4 Frame_Shift_Del p.L504Vfs*96 0.34 TCGA-BR-7851-01 5 140188299 140188299 G A PCDHA4 Silent p.S509S 0.27 TCGA-BR-7851-01 5 140216075 140216075 G A PCDHA7 Missense_Mutation p.A703T 0.27 deleterious_low_confidence(0) possibly_damaging(0.507) TCGA-BR-7851-01 5 140248773 140248773 G A PCDHA11 Missense_Mutation p.G29S 0.13 tolerated_low_confidence(0.06) benign(0.2) TCGA-BR-7851-01 5 140262038 140262038 G A PCDHA13 Missense_Mutation p.R62H 0.40 deleterious_low_confidence(0.02) possibly_damaging(0.805) TCGA-BR-7851-01 5 140346751 140346751 G A PCDHAC2 Missense_Mutation p.V134I 0.59 tolerated(0.12) benign(0.021) TCGA-BR-7851-01 5 140431715 140431715 G A PCDHB1 Silent p.P220P 0.36 TCGA-BR-7851-01 5 140474590 140474590 A - PCDHB2 Frame_Shift_Del p.M75Cfs*14 0.25 TCGA-BR-7851-01 5 140476009 140476009 C T PCDHB2 Silent p.S545S 0.14 TCGA-BR-7851-01 5 140482006 140482006 G A PCDHB3 Silent p.A591A 0.14 TCGA-BR-7851-01 5 140516916 140516916 G A PCDHB5 Missense_Mutation p.A634T 0.26 deleterious_low_confidence(0.03) benign(0.225) TCGA-BR-7851-01 5 140588663 140588663 C T PCDHB12 Missense_Mutation p.R62W 0.35 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-BR-7851-01 5 140589450 140589450 G T PCDHB12 Missense_Mutation p.G324V 0.16 deleterious_low_confidence(0.01) probably_damaging(0.983) TCGA-BR-7851-01 5 140594607 140594607 A - PCDHB13 Frame_Shift_Del p.K306Nfs*30 0.18 TCGA-BR-7851-01 5 140723819 140723819 G T PCDHGA3 Missense_Mutation p.Q73H 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.599) TCGA-BR-7851-01 5 140754671 140754671 A G PCDHGA6 Missense_Mutation p.N341D 0.29 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BR-7851-01 5 140783640 140783640 G A PCDHGA9 Missense_Mutation p.R374Q 0.33 tolerated_low_confidence(0.62) benign(0.048) TCGA-BR-7851-01 5 140799286 140799286 G A PCDHGB7 Silent p.G620G 0.17 TCGA-BR-7851-01 5 141050145 141050145 C T ARAP3 Missense_Mutation p.G681S 0.23 tolerated(0.15) benign(0.047) TCGA-BR-7851-01 5 14461390 14461390 G A TRIO Silent p.A1822A 0.26 TCGA-BR-7851-01 5 14498630 14498630 A G TRIO Missense_Mutation p.D2738G 0.24 unknown(0) TCGA-BR-7851-01 5 14508455 14508455 G A TRIO Missense_Mutation p.R3073H 0.32 unknown(0) TCGA-BR-7851-01 5 147473960 147473960 T - SPINK5 Frame_Shift_Del p.C239Vfs*56 0.27 TCGA-BR-7851-01 5 147774406 147774406 G A FBXO38 Missense_Mutation p.A23T 0.27 tolerated_low_confidence(0.47) benign(0.012) TCGA-BR-7851-01 5 148685930 148685930 C T AFAP1L1 Silent p.Y166Y 0.17 TCGA-BR-7851-01 5 149449811 149449811 A - CSF1R Frame_Shift_Del p.L418Cfs*12 0.13 TCGA-BR-7851-01 5 149497347 149497347 G A PDGFRB Missense_Mutation p.R991C 0.45 deleterious(0) possibly_damaging(0.886) TCGA-BR-7851-01 5 150029294 150029294 G A SYNPO Missense_Mutation p.R730H 0.30 deleterious(0) probably_damaging(0.999) TCGA-BR-7851-01 5 150072459 150072459 G - RBM22 Frame_Shift_Del p.P377Qfs*86 0.22 TCGA-BR-7851-01 5 151784174 151784174 G A NMUR2 Silent p.L167L 0.25 TCGA-BR-7851-01 5 154092575 154092575 C T LARP1 Silent p.G30G 0.34 TCGA-BR-7851-01 5 15616143 15616143 C T FBXL7 Missense_Mutation p.T30M 0.24 tolerated(0.12) probably_damaging(0.991) TCGA-BR-7851-01 5 162910330 162910330 G A HMMR Missense_Mutation p.R581H 0.35 deleterious(0.05) benign(0.06) TCGA-BR-7851-01 5 171299913 171299913 G A FBXW11 Missense_Mutation p.R414C 0.09 deleterious(0.02) benign(0.196) TCGA-BR-7851-01 5 172661804 172661804 G A NKX2-5 Missense_Mutation p.R95C 0.26 deleterious(0.01) benign(0.249) TCGA-BR-7851-01 5 175819790 175819790 C T CLTB Silent p.T225T 0.30 TCGA-BR-7851-01 5 176023872 176023872 G A GPRIN1 Silent p.R988R 0.43 TCGA-BR-7851-01 5 176056501 176056501 C T SNCB Intron 0.33 TCGA-BR-7851-01 5 176056536 176056536 G A SNCB Silent p.V40V 0.32 TCGA-BR-7851-01 5 176070213 176070213 C T EIF4E1B Missense_Mutation p.A49V 0.11 tolerated(0.07) benign(0.015) TCGA-BR-7851-01 5 176332464 176332464 C T UIMC1 Missense_Mutation p.G660D 0.27 tolerated(0.27) possibly_damaging(0.818) TCGA-BR-7851-01 5 176694686 176694686 G T NSD1 Missense_Mutation p.R1757M 0.29 deleterious(0) probably_damaging(0.95) TCGA-BR-7851-01 5 179012795 179012795 A G RUFY1 Splice_Site p.X319_splice 0.05 TCGA-BR-7851-01 5 179250039 179250039 G A SQSTM1 Missense_Mutation p.R96Q 0.27 deleterious(0) probably_damaging(0.997) TCGA-BR-7851-01 5 180056351 180056351 T C FLT4 Missense_Mutation p.H298R 0.38 tolerated(0.17) benign(0.008) TCGA-BR-7851-01 5 180432603 180432603 T C BTNL3 Missense_Mutation p.W378R 0.29 deleterious(0) probably_damaging(1) TCGA-BR-7851-01 5 2749765 2749765 A G IRX2 Missense_Mutation p.L129P 0.35 deleterious(0) probably_damaging(0.998) TCGA-BR-7851-01 5 32072313 32072313 A G PDZD2 Missense_Mutation p.D872G 0.04 deleterious(0.04) benign(0.037) TCGA-BR-7851-01 5 33576770 33576770 C T ADAMTS12 Missense_Mutation p.A1121T 0.07 tolerated(0.38) benign(0.002) TCGA-BR-7851-01 5 37022190 37022190 G A NIPBL Missense_Mutation p.R1789Q 0.23 deleterious(0) probably_damaging(0.997) TCGA-BR-7851-01 5 38949500 38949500 C - RICTOR Intron 0.20 TCGA-BR-7851-01 5 38968099 38968099 G A RICTOR Missense_Mutation p.R336C 0.13 tolerated(0.06) probably_damaging(0.939) TCGA-BR-7851-01 5 41061745 41061745 C T MROH2B Missense_Mutation p.R181Q 0.26 tolerated(0.21) benign(0.045) TCGA-BR-7851-01 5 41794812 41794812 A - OXCT1 Frame_Shift_Del p.F380Sfs*9 0.25 TCGA-BR-7851-01 5 480034 480034 G A SLC9A3 Missense_Mutation p.R522W 0.37 deleterious(0) possibly_damaging(0.677) TCGA-BR-7851-01 5 5239326 5239326 C T ADAMTS16 Silent p.N739N 0.36 TCGA-BR-7851-01 5 52778724 52778724 C T FST Missense_Mutation p.L34F 0.20 deleterious(0.02) benign(0.391) TCGA-BR-7851-01 5 54415630 54415630 A - CDC20B Frame_Shift_Del p.F486Lfs*12 0.12 TCGA-BR-7851-01 5 5466527 5466527 C T KIAA0947 Silent p.H1991H 0.26 TCGA-BR-7851-01 5 56179352 56179352 A G MAP3K1 Splice_Site p.X1223_splice 0.21 TCGA-BR-7851-01 5 6337327 6337327 G T CTD-2324F15.2 RNA 0.26 TCGA-BR-7851-01 5 64909976 64909976 C T TRIM23 Silent p.G105G 0.28 TCGA-BR-7851-01 5 6751166 6751166 G A PAPD7 Silent p.P375P 0.20 TCGA-BR-7851-01 5 68715357 68715357 C - MARVELD2 Frame_Shift_Del p.P50Lfs*22 0.16 TCGA-BR-7851-01 5 71494147 71494147 G A MAP1B Silent p.E1655E 0.29 TCGA-BR-7851-01 5 71739823 71739823 C A ZNF366 Missense_Mutation p.E665D 0.29 tolerated_low_confidence(0.24) benign(0.001) TCGA-BR-7851-01 5 71756222 71756222 C T ZNF366 Missense_Mutation p.V368M 0.19 deleterious(0.02) probably_damaging(0.952) TCGA-BR-7851-01 5 7396481 7396481 C T ADCY2 Silent p.D24D 0.27 TCGA-BR-7851-01 5 74892817 74892817 T C POLK Missense_Mutation p.Y767H 0.12 tolerated(0.54) benign(0.002) TCGA-BR-7851-01 5 75993813 75993813 A G IQGAP2 Missense_Mutation p.D1403G 0.19 deleterious(0) probably_damaging(0.912) TCGA-BR-7851-01 5 76029169 76029169 C T F2R Silent p.Y373Y 0.37 TCGA-BR-7851-01 5 7867143 7867144 - A FASTKD3 Frame_Shift_Ins p.T352Yfs*18 0.11 TCGA-BR-7851-01 5 78919302 78919302 C T PAPD4 Missense_Mutation p.A152V 0.11 tolerated(0.19) benign(0.194) TCGA-BR-7851-01 5 78938656 78938657 - T PAPD4 Frame_Shift_Ins p.Q228Sfs*7 0.43 TCGA-BR-7851-01 5 79035006 79035006 G A CMYA5 Missense_Mutation p.S3473N 0.29 benign(0.183) TCGA-BR-7851-01 5 82815967 82815967 T C VCAN Silent p.N614N 0.33 TCGA-BR-7851-01 5 86672789 86672789 T - RASA1 Frame_Shift_Del p.L761Ffs*13 0.10 TCGA-BR-7851-01 5 86675571 86675571 A - RASA1 Frame_Shift_Del p.N838Mfs*4 0.13 TCGA-BR-7851-01 5 98221294 98221294 A G CHD1 Silent p.A852A 0.33 TCGA-BR-7851-01 6 100895235 100895235 C T SIM1 Missense_Mutation p.G303S 0.34 deleterious(0.01) probably_damaging(1) TCGA-BR-7851-01 6 110300686 110300686 G A GPR6 Missense_Mutation p.G124D 0.26 deleterious(0) probably_damaging(0.999) TCGA-BR-7851-01 6 110726062 110726062 T C DDO Missense_Mutation p.K153E 0.20 tolerated(0.53) possibly_damaging(0.46) TCGA-BR-7851-01 6 111493979 111493979 G A SLC16A10 Missense_Mutation p.R142Q 0.24 tolerated(0.05) possibly_damaging(0.744) TCGA-BR-7851-01 6 117681166 117681166 G T ROS1 Missense_Mutation p.P1152T 0.33 deleterious(0.01) benign(0.009) TCGA-BR-7851-01 6 119245098 119245098 A - MCM9 Frame_Shift_Del p.C167Afs*54 0.26 TCGA-BR-7851-01 6 12122644 12122644 C T HIVEP1 Silent p.G872G 0.25 TCGA-BR-7851-01 6 12125941 12125941 C T HIVEP1 Silent p.S1971S 0.33 TCGA-BR-7851-01 6 121768938 121768938 A G GJA1 Silent p.A315A 0.32 TCGA-BR-7851-01 6 125404041 125404042 - A RNF217 Frame_Shift_Ins 0.30 TCGA-BR-7851-01 6 127771251 127771252 - T KIAA0408 Frame_Shift_Ins p.S128Ifs*18 0.39 TCGA-BR-7851-01 6 127796465 127796465 G A SOGA3 Silent p.G902G 0.30 TCGA-BR-7851-01 6 128411121 128411122 - G PTPRK Frame_Shift_Ins p.T395Dfs*6 0.21 TCGA-BR-7851-01 6 131481276 131481276 A - AKAP7 Frame_Shift_Del p.K79Rfs*21 0.39 TCGA-BR-7851-01 6 135318639 135318639 G - HBS1L Frame_Shift_Del p.P232Qfs*4 0.10 TCGA-BR-7851-01 6 138615258 138615258 T C KIAA1244 Missense_Mutation p.M1166T 0.08 tolerated(0.23) benign(0.441) TCGA-BR-7851-01 6 138655648 138655648 G A KIAA1244 Missense_Mutation p.V1889I 0.30 tolerated_low_confidence(0.18) benign(0.022) TCGA-BR-7851-01 6 148711347 148711347 C T SASH1 Silent p.C78C 0.36 TCGA-BR-7851-01 6 150016247 150016247 T A LATS1 Silent p.A153A 0.30 TCGA-BR-7851-01 6 152542668 152542668 C T SYNE1 Silent p.Q7183Q 0.26 TCGA-BR-7851-01 6 152555882 152555882 C T SYNE1 Missense_Mutation p.R6817Q 0.27 benign(0.004) TCGA-BR-7851-01 6 154360894 154360894 C T OPRM1 Missense_Mutation p.T165M 0.25 tolerated(0.06) possibly_damaging(0.536) TCGA-BR-7851-01 6 155145472 155145472 T - SCAF8 Frame_Shift_Del p.L679* 0.29 TCGA-BR-7851-01 6 159655393 159655393 G A FNDC1 Silent p.T1283T 0.32 TCGA-BR-7851-01 6 16328426 16328426 C T ATXN1 Missense_Mutation p.R39Q 0.37 deleterious(0.05) benign(0.007) TCGA-BR-7851-01 6 168347522 168347522 C A MLLT4 Missense_Mutation p.P1158H 0.05 deleterious_low_confidence(0.05) possibly_damaging(0.866) TCGA-BR-7851-01 6 17539525 17539525 C T CAP2 Missense_Mutation p.A221V 0.33 tolerated(0.44) benign(0.002) TCGA-BR-7851-01 6 27880013 27880013 C A OR2B2 Missense_Mutation p.V29L 0.20 deleterious(0.04) benign(0.21) TCGA-BR-7851-01 6 29692082 29692082 C T HLA-F Missense_Mutation p.A156V 0.05 deleterious_low_confidence(0.01) probably_damaging(0.961) TCGA-BR-7851-01 6 29694785 29694785 G T HLA-F Missense_Mutation p.G388C 0.29 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-BR-7851-01 6 30545935 30545935 G A ABCF1 Missense_Mutation p.R100H 0.27 deleterious_low_confidence(0.01) probably_damaging(0.954) TCGA-BR-7851-01 6 30572422 30572422 C T PPP1R10 Missense_Mutation p.A349T 0.24 tolerated(0.83) benign(0) TCGA-BR-7851-01 6 30892199 30892199 C T VARS2 Silent p.C875C 0.25 TCGA-BR-7851-01 6 3152763 3152763 G A BPHL Missense_Mutation p.R277H 0.30 deleterious(0.01) possibly_damaging(0.717) TCGA-BR-7851-01 6 32087712 32087712 C A ATF6B Missense_Mutation p.Q285H 0.13 tolerated(0.1) probably_damaging(0.976) TCGA-BR-7851-01 6 32137118 32137118 G A AGPAT1 Missense_Mutation p.R263W 0.31 tolerated(0.18) possibly_damaging(0.786) TCGA-BR-7851-01 6 32159230 32159230 C - GPSM3 Frame_Shift_Del p.Q133Kfs*8 0.16 TCGA-BR-7851-01 6 32726773 32726773 G A HLA-DQB2 Missense_Mutation p.A167V 0.41 tolerated(0.07) benign(0.11) TCGA-BR-7851-01 6 32784740 32784741 - A HLA-DOB 5'UTR 0.31 TCGA-BR-7851-01 6 32825904 32825904 G A PSMB9 Missense_Mutation p.G128E 0.25 deleterious(0) probably_damaging(0.978) TCGA-BR-7851-01 6 32976132 32976132 G A HLA-DOA Intron 0.30 TCGA-BR-7851-01 6 33133582 33133582 G A COL11A2 Silent p.G1412G 0.26 TCGA-BR-7851-01 6 33153500 33153500 G A COL11A2 Intron 0.27 TCGA-BR-7851-01 6 34008337 34008337 C T GRM4 Missense_Mutation p.V453I 0.39 deleterious(0.05) possibly_damaging(0.493) TCGA-BR-7851-01 6 34741334 34741334 G A SNRPC Missense_Mutation p.R156Q 0.18 tolerated_low_confidence(0.3) unknown(0) TCGA-BR-7851-01 6 35437275 35437277 CAA - RPL10A In_Frame_Del p.N94del 0.36 TCGA-BR-7851-01 6 35471369 35471369 C T TULP1 Silent p.A430A 0.25 TCGA-BR-7851-01 6 35837277 35837277 C T SRPK1 Missense_Mutation p.G465R 0.28 deleterious(0.03) benign(0.018) TCGA-BR-7851-01 6 394997 394997 A G IRF4 Silent p.G131G 0.10 TCGA-BR-7851-01 6 42211030 42211030 G A TRERF1 Missense_Mutation p.R939W 0.28 deleterious(0) possibly_damaging(0.689) TCGA-BR-7851-01 6 42832627 42832627 A - GLTSCR1L Frame_Shift_Del p.T897Qfs*8 0.26 TCGA-BR-7851-01 6 42858503 42858503 T C C6orf226 Silent p.Q8Q 0.34 TCGA-BR-7851-01 6 43020092 43020092 G A CUL7 Silent p.S197S 0.28 TCGA-BR-7851-01 6 43166449 43166449 G A CUL9 Missense_Mutation p.R969H 0.26 tolerated(0.13) benign(0.006) TCGA-BR-7851-01 6 43417235 43417235 C T ABCC10 Missense_Mutation p.R1427C 0.29 deleterious(0.04) probably_damaging(0.994) TCGA-BR-7851-01 6 43491633 43491634 - C XPO5 Frame_Shift_Ins p.G1197Wfs*7 0.25 TCGA-BR-7851-01 6 44371656 44371656 A - CDC5L Frame_Shift_Del p.K219Sfs*24 0.24 TCGA-BR-7851-01 6 46659410 46659410 A - TDRD6 Frame_Shift_Del p.N1184Mfs*4 0.23 TCGA-BR-7851-01 6 49989664 49989664 A - DEFB110 5'UTR 0.36 TCGA-BR-7851-01 6 52269023 52269023 G A PAQR8 Missense_Mutation p.A338T 0.45 deleterious(0) probably_damaging(0.996) TCGA-BR-7851-01 6 532495 532495 T A EXOC2 Missense_Mutation p.D785V 0.20 deleterious(0) possibly_damaging(0.88) TCGA-BR-7851-01 6 62604715 62604715 G T KHDRBS2 Missense_Mutation p.P212H 0.29 tolerated(0.1) benign(0.011) TCGA-BR-7851-01 6 64395471 64395471 T A PHF3 Silent p.T616T 0.12 TCGA-BR-7851-01 6 70071269 70071269 A G BAI3 Silent p.A1368A 0.27 TCGA-BR-7851-01 6 71185391 71185392 - T FAM135A Frame_Shift_Ins p.L110Sfs*17 0.36 TCGA-BR-7851-01 6 73023356 73023356 C T RIMS1 Missense_Mutation p.R1371C 0.19 deleterious(0) possibly_damaging(0.656) TCGA-BR-7851-01 6 73902299 73902299 T C KCNQ5 Missense_Mutation p.I593T 0.25 deleterious(0) probably_damaging(0.946) TCGA-BR-7851-01 6 7584495 7584495 C T DSP Nonsense_Mutation p.R2334* 0.58 TCGA-BR-7851-01 6 76623784 76623784 G A MYO6 Silent p.Q1148Q 0.24 TCGA-BR-7851-01 6 7727818 7727818 C T BMP6 Silent p.N210N 0.11 TCGA-BR-7851-01 6 83848119 83848119 T C DOPEY1 Missense_Mutation p.I1453T 0.39 deleterious(0) possibly_damaging(0.597) TCGA-BR-7851-01 6 83885707 83885707 A G PGM3 Missense_Mutation p.Y396H 0.27 deleterious(0) probably_damaging(1) TCGA-BR-7851-01 6 94120757 94120757 A T EPHA7 Silent p.I98I 0.26 TCGA-BR-7851-01 7 100017294 100017294 T - ZCWPW1 Frame_Shift_Del p.R81Efs*57 0.16 TCGA-BR-7851-01 7 100276170 100276170 G A GNB2 Silent p.R283R 0.38 TCGA-BR-7851-01 7 100453339 100453339 C T SLC12A9 Missense_Mutation p.R110C 0.31 deleterious(0) probably_damaging(1) TCGA-BR-7851-01 7 100676267 100676267 G A MUC17 Missense_Mutation p.A524T 0.30 benign(0.097) TCGA-BR-7851-01 7 106523501 106523501 G A PIK3CG Missense_Mutation p.A885T 0.33 deleterious(0) probably_damaging(0.977) TCGA-BR-7851-01 7 107832251 107832251 C T NRCAM Missense_Mutation p.D609N 0.29 tolerated(0.28) benign(0.003) TCGA-BR-7851-01 7 115624318 115624318 G A TFEC Missense_Mutation p.H60Y 0.33 deleterious(0.01) benign(0.34) TCGA-BR-7851-01 7 121651647 121651647 C T PTPRZ1 Silent p.T849T 0.26 TCGA-BR-7851-01 7 123101607 123101607 C A IQUB Missense_Mutation p.C604F 0.44 deleterious(0) probably_damaging(0.996) TCGA-BR-7851-01 7 123516942 123516942 C T HYAL4 Silent p.N393N 0.23 TCGA-BR-7851-01 7 127670552 127670553 - G LRRC4 Frame_Shift_Ins p.S48Lfs*7 0.23 TCGA-BR-7851-01 7 128482949 128482949 G A FLNC Missense_Mutation p.V831I 0.28 deleterious(0.04) probably_damaging(0.982) TCGA-BR-7851-01 7 128486419 128486419 C T FLNC Silent p.G1343G 0.41 TCGA-BR-7851-01 7 129813694 129813694 T C TMEM209 Missense_Mutation p.Q477R 0.25 deleterious(0) probably_damaging(0.989) TCGA-BR-7851-01 7 129986424 129986424 G A CPA5 Missense_Mutation p.G33D 0.33 tolerated(0.15) possibly_damaging(0.907) TCGA-BR-7851-01 7 131196153 131196153 G A PODXL Missense_Mutation p.P47L 0.27 tolerated_low_confidence(0.59) benign(0) TCGA-BR-7851-01 7 134643002 134643002 G T CALD1 Missense_Mutation p.K674N 0.15 deleterious(0) probably_damaging(0.999) TCGA-BR-7851-01 7 138603524 138603524 A T KIAA1549 Nonsense_Mutation p.L283* 0.23 TCGA-BR-7851-01 7 142013286 142013286 G A TRBV4-1 Silent p.G47G 0.17 TCGA-BR-7851-01 7 142983605 142983605 C - TMEM139 Frame_Shift_Del p.Y114Tfs*5 0.23 TCGA-BR-7851-01 7 143573697 143573697 G A FAM115A Missense_Mutation p.A2V 0.31 tolerated_low_confidence(0.12) benign(0.023) TCGA-BR-7851-01 7 143806930 143806930 G A OR2A2 Missense_Mutation p.M85I 0.17 tolerated(0.07) benign(0.003) TCGA-BR-7851-01 7 144150649 144150649 T C TPK1 Missense_Mutation p.I241V 0.23 tolerated(0.21) benign(0.001) TCGA-BR-7851-01 7 147092804 147092804 C T CNTNAP2 Silent p.Y534Y 0.21 TCGA-BR-7851-01 7 148427188 148427188 C T CUL1 5'UTR 0.27 TCGA-BR-7851-01 7 148485686 148485686 G A CUL1 Missense_Mutation p.R506H 0.23 deleterious(0) probably_damaging(0.952) TCGA-BR-7851-01 7 148963915 148963915 C T ZNF783 Silent p.P142P 0.24 TCGA-BR-7851-01 7 149475868 149475868 A G SSPO Splice_Site 0.14 TCGA-BR-7851-01 7 149515744 149515744 G A SSPO RNA 0.41 TCGA-BR-7851-01 7 150648197 150648197 C T KCNH2 Missense_Mutation p.A653T 0.19 deleterious(0) probably_damaging(1) TCGA-BR-7851-01 7 150733214 150733214 C T ABCB8 Silent p.R356R 0.39 TCGA-BR-7851-01 7 150945689 150945689 T C SMARCD3 5'UTR 0.38 TCGA-BR-7851-01 7 151052933 151052933 G A NUB1 Silent p.A189A 0.27 TCGA-BR-7851-01 7 151093119 151093119 C T WDR86 Missense_Mutation p.A157T 0.33 tolerated(0.54) benign(0.002) TCGA-BR-7851-01 7 154863133 154863133 C T HTR5A Missense_Mutation p.A175V 0.19 deleterious(0.02) possibly_damaging(0.697) TCGA-BR-7851-01 7 154863297 154863297 C T HTR5A Missense_Mutation p.R230C 0.32 deleterious(0.01) possibly_damaging(0.643) TCGA-BR-7851-01 7 156743110 156743110 A G NOM1 Missense_Mutation p.K227E 0.35 tolerated(0.66) benign(0.002) TCGA-BR-7851-01 7 25266466 25266466 G A NPVF Silent p.A106A 0.29 TCGA-BR-7851-01 7 2582910 2582910 G A BRAT1 Missense_Mutation p.A284V 0.32 deleterious(0.05) possibly_damaging(0.656) TCGA-BR-7851-01 7 2976742 2976742 G A CARD11 Missense_Mutation p.R424W 0.16 deleterious(0.02) possibly_damaging(0.822) TCGA-BR-7851-01 7 31862802 31862802 C A PDE1C Missense_Mutation p.E549D 0.24 tolerated(0.62) benign(0.05) TCGA-BR-7851-01 7 33057165 33057165 G A NT5C3A Silent p.P198P 0.37 TCGA-BR-7851-01 7 38313227 38313227 T - TRGJP Frame_Shift_Del p.I8Sfs*? 0.26 TCGA-BR-7851-01 7 3991509 3991509 C T SDK1 Silent p.S369S 0.18 TCGA-BR-7851-01 7 4056969 4056969 T C SDK1 Missense_Mutation p.Y863H 0.09 deleterious(0.05) possibly_damaging(0.702) TCGA-BR-7851-01 7 42005573 42005573 G - GLI3 Frame_Shift_Del p.P1033Rfs*46 0.25 TCGA-BR-7851-01 7 43547694 43547694 G A HECW1 Missense_Mutation p.R1277Q 0.29 deleterious(0) possibly_damaging(0.695) TCGA-BR-7851-01 7 43590095 43590095 A - HECW1 Frame_Shift_Del p.N1435Tfs*10 0.16 TCGA-BR-7851-01 7 44096401 44096401 C T DBNL Missense_Mutation p.P125S 0.22 deleterious(0) possibly_damaging(0.496) TCGA-BR-7851-01 7 44149688 44149688 G A AEBP1 Missense_Mutation p.G409S 0.24 deleterious(0.01) probably_damaging(0.969) TCGA-BR-7851-01 7 44286737 44286737 G A CAMK2B Silent p.V132V 0.38 TCGA-BR-7851-01 7 45145252 45145252 G A TBRG4 Missense_Mutation p.R175C 0.33 deleterious(0) probably_damaging(0.993) TCGA-BR-7851-01 7 4799028 4799028 G A FOXK1 Missense_Mutation p.A500T 0.40 deleterious(0.01) possibly_damaging(0.581) TCGA-BR-7851-01 7 48048635 48048635 A - SUN3 Frame_Shift_Del p.L109* 0.26 TCGA-BR-7851-01 7 50097612 50097612 G A ZPBP Missense_Mutation p.R154C 0.25 deleterious(0.04) possibly_damaging(0.809) TCGA-BR-7851-01 7 55266518 55266518 C T EGFR Missense_Mutation p.P937L 0.21 tolerated(0.1) probably_damaging(1) TCGA-BR-7851-01 7 6456489 6456489 C A DAGLB Missense_Mutation p.A428S 0.09 deleterious(0.01) possibly_damaging(0.458) TCGA-BR-7851-01 7 66548503 66548503 A G TYW1 Missense_Mutation p.Q454R 0.20 tolerated(0.33) benign(0.013) TCGA-BR-7851-01 7 6776842 6776842 G A PMS2CL RNA 0.39 TCGA-BR-7851-01 7 73477988 73477988 C T ELN Silent p.V652V 0.37 TCGA-BR-7851-01 7 73932542 73932542 C T GTF2IRD1 Silent p.A197A 0.19 TCGA-BR-7851-01 7 803547 803547 G A HEATR2 Silent p.S573S 0.20 TCGA-BR-7851-01 7 86415922 86415922 G A GRM3 Missense_Mutation p.V272M 0.29 deleterious(0) probably_damaging(0.993) TCGA-BR-7851-01 7 86795920 86795920 A G DMTF1 Silent p.P77P 0.19 TCGA-BR-7851-01 7 87046743 87046743 A G ABCB4 Missense_Mutation p.L856S 0.23 deleterious(0) probably_damaging(0.969) TCGA-BR-7851-01 7 89874708 89874708 C - C7orf63 5'UTR 0.31 TCGA-BR-7851-01 7 92837964 92837964 A G HEPACAM2 Missense_Mutation p.V314A 0.31 tolerated(0.09) benign(0.007) TCGA-BR-7851-01 7 92885827 92885827 A - CCDC132 Frame_Shift_Del p.V104Wfs*4 0.19 TCGA-BR-7851-01 7 93551517 93551517 G A GNG11 Missense_Mutation p.R23H 0.25 deleterious(0) possibly_damaging(0.807) TCGA-BR-7851-01 7 94855332 94855332 C T PPP1R9A Silent p.S672S 0.26 TCGA-BR-7851-01 7 97833426 97833426 T C LMTK2 Missense_Mutation p.F1471L 0.19 deleterious(0) probably_damaging(0.998) TCGA-BR-7851-01 7 98519451 98519451 G A TRRAP Missense_Mutation p.G900S 0.25 probably_damaging(0.972) TCGA-BR-7851-01 7 99085132 99085132 T C ZNF789 3'UTR 0.36 TCGA-BR-7851-01 7 99129277 99129277 T A ZKSCAN5 Missense_Mutation p.F642Y 0.09 tolerated(0.09) probably_damaging(0.995) TCGA-BR-7851-01 7 99702715 99702715 C T AP4M1 Silent p.L241L 0.38 TCGA-BR-7851-01 7 99710469 99710469 C T TAF6 Missense_Mutation p.G213R 0.30 deleterious(0.03) possibly_damaging(0.509) TCGA-BR-7851-01 8 10467651 10467651 C T RP1L1 Silent p.A1319A 0.24 TCGA-BR-7851-01 8 106814404 106814404 G A ZFPM2 Silent p.R698R 0.32 TCGA-BR-7851-01 8 109241324 109241324 C T EIF3E Missense_Mutation p.R191Q 0.22 tolerated(0.05) possibly_damaging(0.504) TCGA-BR-7851-01 8 11058405 11058405 C T XKR6 Nonsense_Mutation p.W148* 0.36 TCGA-BR-7851-01 8 110986292 110986292 G A KCNV1 Missense_Mutation p.A109V 0.50 deleterious(0.03) benign(0.314) TCGA-BR-7851-01 8 121015322 121015322 C - DEPTOR Frame_Shift_Del p.P301Lfs*10 0.16 TCGA-BR-7851-01 8 121256232 121256232 G A COL14A1 Missense_Mutation p.A822T 0.35 tolerated(0.05) possibly_damaging(0.788) TCGA-BR-7851-01 8 124267572 124267572 G A ZHX1 Silent p.D205D 0.23 TCGA-BR-7851-01 8 125597362 125597362 C T MTSS1 Silent p.S142S 0.25 TCGA-BR-7851-01 8 12946207 12946207 C T DLC1 Missense_Mutation p.E1361K 0.36 deleterious(0) possibly_damaging(0.804) TCGA-BR-7851-01 8 131916289 131916289 C A ADCY8 Splice_Site p.X547_splice 0.16 TCGA-BR-7851-01 8 133053404 133053404 C T OC90 Splice_Site p.X115_splice 0.45 TCGA-BR-7851-01 8 133885421 133885421 A G TG Missense_Mutation p.N198S 0.14 deleterious(0) probably_damaging(0.982) TCGA-BR-7851-01 8 134232915 134232915 C T WISP1 Silent p.I147I 0.27 TCGA-BR-7851-01 8 141570558 141570558 G A AGO2 Silent p.N190N 0.08 TCGA-BR-7851-01 8 141762399 141762399 G A PTK2 Missense_Mutation p.A450V 0.29 tolerated(0.18) benign(0.049) TCGA-BR-7851-01 8 143566074 143566074 G A BAI1 Missense_Mutation p.G753S 0.19 deleterious(0.03) probably_damaging(0.961) TCGA-BR-7851-01 8 144378511 144378511 G A ZNF696 Silent p.S222S 0.44 TCGA-BR-7851-01 8 145666115 145666115 C T TONSL Missense_Mutation p.G384S 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-BR-7851-01 8 145746374 145746374 A G LRRC14 Missense_Mutation p.S332G 0.32 deleterious(0) probably_damaging(0.995) TCGA-BR-7851-01 8 1645408 1645408 C T DLGAP2 Silent p.D884D 0.28 TCGA-BR-7851-01 8 17230724 17230724 C T MTMR7 Missense_Mutation p.R17Q 0.16 deleterious(0.02) benign(0.108) TCGA-BR-7851-01 8 1808263 1808263 G T ARHGEF10 Missense_Mutation p.G132C 0.33 deleterious_low_confidence(0) probably_damaging(1) TCGA-BR-7851-01 8 19811791 19811791 G A LPL Silent p.P234P 0.31 TCGA-BR-7851-01 8 22056713 22056714 - C BMP1 Intron 0.23 TCGA-BR-7851-01 8 23155616 23155616 C T LOXL2 Silent p.E755E 0.30 TCGA-BR-7851-01 8 24811732 24811732 C T CTD-2168K21.2 5'Flank 0.33 TCGA-BR-7851-01 8 25890600 25890600 C T EBF2 Splice_Site p.X184_splice 0.07 TCGA-BR-7851-01 8 26238133 26238133 T C BNIP3L 5'Flank 0.64 TCGA-BR-7851-01 8 26365784 26365784 C T PNMA2 Missense_Mutation p.R163Q 0.30 tolerated(0.16) benign(0.004) TCGA-BR-7851-01 8 26721683 26721683 C A ADRA1A Missense_Mutation p.K268N 0.29 deleterious(0) probably_damaging(0.988) TCGA-BR-7851-01 8 27965470 27965470 A G ELP3 Missense_Mutation p.T124A 0.11 tolerated(0.11) benign(0.287) TCGA-BR-7851-01 8 28385159 28385159 T - FZD3 Frame_Shift_Del p.F296Lfs*10 0.22 TCGA-BR-7851-01 8 30703130 30703130 T C TEX15 Missense_Mutation p.Q1135R 0.10 tolerated(0.05) benign(0.306) TCGA-BR-7851-01 8 36768479 36768479 C T KCNU1 Missense_Mutation p.A788V 0.25 deleterious(0.02) possibly_damaging(0.536) TCGA-BR-7851-01 8 37986395 37986395 G A ASH2L Missense_Mutation p.V485I 0.32 tolerated(0.35) benign(0.016) TCGA-BR-7851-01 8 38257862 38257862 A T LETM2 Missense_Mutation p.M193L 0.15 deleterious(0.04) benign(0.09) TCGA-BR-7851-01 8 38271463 38271463 G A FGFR1 Silent p.D786D 0.13 TCGA-BR-7851-01 8 38684796 38684796 C T TACC1 Silent p.A521A 0.25 TCGA-BR-7851-01 8 41164365 41164366 - C SFRP1 Intron 0.22 TCGA-BR-7851-01 8 41573253 41573253 G - ANK1 Frame_Shift_Del p.L540Cfs*26 0.19 TCGA-BR-7851-01 8 42302235 42302235 A G SLC20A2 Missense_Mutation p.F220S 0.28 tolerated(0.05) benign(0.003) TCGA-BR-7851-01 8 42587314 42587314 G A CHRNB3 Silent p.S288S 0.24 TCGA-BR-7851-01 8 42725159 42725159 G A RNF170 Missense_Mutation p.H104Y 0.20 deleterious(0) probably_damaging(1) TCGA-BR-7851-01 8 42940419 42940419 G T FNTA Missense_Mutation p.Q378H 0.28 deleterious_low_confidence(0.05) benign(0.005) TCGA-BR-7851-01 8 49647735 49647735 G A EFCAB1 5'UTR 0.28 TCGA-BR-7851-01 8 59750825 59750825 G T TOX Missense_Mutation p.P247T 0.22 deleterious(0.03) benign(0.244) TCGA-BR-7851-01 8 65494257 65494257 C T BHLHE22 Missense_Mutation p.R304W 0.33 deleterious(0) probably_damaging(0.982) TCGA-BR-7851-01 8 67342429 67342429 G T RRS1 Nonsense_Mutation p.G355* 0.13 TCGA-BR-7851-01 8 67716612 67716612 A - SGK3 Frame_Shift_Del p.K63Nfs*8 0.21 TCGA-BR-7851-01 8 68140283 68140284 - T ARFGEF1 Frame_Shift_Ins p.I1169Nfs*28 0.18 TCGA-BR-7851-01 8 68965390 68965390 A - PREX2 Frame_Shift_Del p.N336Ifs*22 0.23 TCGA-BR-7851-01 8 71069388 71069388 G T NCOA2 Silent p.A404A 0.19 TCGA-BR-7851-01 8 72123392 72123392 T - EYA1 Frame_Shift_Del p.K566Sfs*73 0.21 TCGA-BR-7851-01 8 72950232 72950232 G A TRPA1 Nonsense_Mutation p.Q791* 0.15 TCGA-BR-7851-01 8 72969971 72969971 T C TRPA1 Silent p.V358V 0.25 TCGA-BR-7851-01 8 77765588 77765588 T C ZFHX4 Missense_Mutation p.L2144P 0.36 probably_damaging(0.999) TCGA-BR-7851-01 8 77768464 77768464 G A ZFHX4 Missense_Mutation p.G3103S 0.07 probably_damaging(0.997) TCGA-BR-7851-01 8 79609723 79609723 G A ZC2HC1A Missense_Mutation p.A196T 0.06 tolerated(0.52) benign(0) TCGA-BR-7851-01 8 93074895 93074895 G A RUNX1T1 Intron 0.35 TCGA-BR-7851-01 8 94934398 94934398 G A PDP1 Silent p.S62S 0.25 TCGA-BR-7851-01 8 9567764 9567764 A G TNKS Intron 0.25 TCGA-BR-7851-01 8 95844297 95844297 G A INTS8 Silent p.T216T 0.38 TCGA-BR-7851-01 8 97156959 97156959 G A GDF6 Silent p.H400H 0.29 TCGA-BR-7851-01 9 101824544 101824544 C T COL15A1 Silent p.P1183P 0.06 TCGA-BR-7851-01 9 101907165 101907165 A - TGFBR1 Frame_Shift_Del p.R377Gfs*12 0.25 TCGA-BR-7851-01 9 106878505 106878506 - G SMC2 Frame_Shift_Ins p.E568Gfs*13 0.22 TCGA-BR-7851-01 9 108536306 108536306 C T TMEM38B Missense_Mutation p.P274L 0.22 tolerated(0.06) benign(0.113) TCGA-BR-7851-01 9 112199206 112199206 G A PTPN3 Missense_Mutation p.A211V 0.25 deleterious(0.03) probably_damaging(0.998) TCGA-BR-7851-01 9 113091539 113091539 A - TXNDC8 Frame_Shift_Del p.F54Lfs*6 0.10 TCGA-BR-7851-01 9 113148241 113148241 C A SVEP1 Missense_Mutation p.G3392C 0.33 probably_damaging(1) TCGA-BR-7851-01 9 113171074 113171074 G - SVEP1 Frame_Shift_Del p.P2269Rfs*7 0.16 TCGA-BR-7851-01 9 116188008 116188008 A G C9orf43 Missense_Mutation p.Y343C 0.30 tolerated(0.22) benign(0.003) TCGA-BR-7851-01 9 116999956 116999956 C G COL27A1 Missense_Mutation p.D896E 0.28 unknown(0) TCGA-BR-7851-01 9 118950298 118950298 G A PAPPA Silent p.E427E 0.37 TCGA-BR-7851-01 9 120176844 120176844 T C ASTN2 Missense_Mutation p.N125D 0.29 deleterious_low_confidence(0.01) unknown(0) TCGA-BR-7851-01 9 120474741 120474741 A G TLR4 Missense_Mutation p.N112S 0.18 deleterious(0) probably_damaging(0.999) TCGA-BR-7851-01 9 123171411 123171411 A G CDK5RAP2 Missense_Mutation p.L1533P 0.31 deleterious(0) probably_damaging(0.979) TCGA-BR-7851-01 9 123222895 123222895 G A CDK5RAP2 Silent p.D719D 0.32 TCGA-BR-7851-01 9 124519334 124519334 G A DAB2IP Silent p.E107E 0.08 TCGA-BR-7851-01 9 124751596 124751596 T C TTLL11 Missense_Mutation p.K473E 0.06 tolerated(0.11) benign(0.171) TCGA-BR-7851-01 9 125145862 125145862 G A PTGS1 Silent p.P279P 0.29 TCGA-BR-7851-01 9 125621307 125621307 C T RC3H2 Missense_Mutation p.V642I 0.34 tolerated(0.29) possibly_damaging(0.897) TCGA-BR-7851-01 9 125746957 125746957 A - RABGAP1 Frame_Shift_Del p.K116Nfs*4 0.11 TCGA-BR-7851-01 9 126129551 126129552 - G CRB2 Frame_Shift_Ins p.V288Cfs*26 0.28 TCGA-BR-7851-01 9 126133051 126133051 C T CRB2 Silent p.D573D 0.34 TCGA-BR-7851-01 9 126135794 126135794 T C CRB2 Missense_Mutation p.F995S 0.43 deleterious(0) possibly_damaging(0.637) TCGA-BR-7851-01 9 127255348 127255348 G A NR5A1 Silent p.H317H 0.18 TCGA-BR-7851-01 9 127910354 127910355 - A PPP6C 3'UTR 0.23 TCGA-BR-7851-01 9 128723070 128723070 C T PBX3 Silent p.H317H 0.24 TCGA-BR-7851-01 9 130476255 130476255 G A PTRH1 3'UTR 0.29 TCGA-BR-7851-01 9 131285932 131285932 G A GLE1 Missense_Mutation p.R235Q 0.23 deleterious(0.04) benign(0.201) TCGA-BR-7851-01 9 131371238 131371238 G A SPTAN1 Missense_Mutation p.R1526H 0.36 tolerated(0.33) unknown(0) TCGA-BR-7851-01 9 132375517 132375517 T A C9orf50 Missense_Mutation p.T353S 0.33 tolerated(0.61) benign(0.248) TCGA-BR-7851-01 9 133355186 133355186 G A ASS1 Missense_Mutation p.A258T 0.29 deleterious(0) benign(0.093) TCGA-BR-7851-01 9 134072669 134072671 CTT - NUP214 In_Frame_Del p.S1264del 0.32 TCGA-BR-7851-01 9 134357808 134357808 G C PRRC2B Missense_Mutation p.E1678D 0.20 tolerated(0.31) probably_damaging(0.992) TCGA-BR-7851-01 9 135919198 135919198 C T GTF3C5 Missense_Mutation p.R153W 0.27 deleterious(0) possibly_damaging(0.663) TCGA-BR-7851-01 9 136321690 136321690 G A ADAMTS13 Silent p.R1247R 0.11 TCGA-BR-7851-01 9 136501526 136501526 C T DBH Silent p.P11P 0.32 TCGA-BR-7851-01 9 137779089 137779089 G T FCN2 Missense_Mutation p.C257F 0.19 deleterious(0) probably_damaging(0.999) TCGA-BR-7851-01 9 137801523 137801523 G T FCN1 3'UTR 0.33 TCGA-BR-7851-01 9 138376418 138376418 C T PPP1R26 Missense_Mutation p.P21L 0.28 deleterious(0.02) benign(0.197) TCGA-BR-7851-01 9 139617653 139617653 G A FAM69B Silent p.A241A 0.08 TCGA-BR-7851-01 9 139935411 139935411 C - NPDC1 Frame_Shift_Del p.Q138Rfs*50 0.16 TCGA-BR-7851-01 9 140438216 140438216 G A PNPLA7 Missense_Mutation p.R109W 0.30 deleterious(0) probably_damaging(0.996) TCGA-BR-7851-01 9 140846745 140846745 A G CACNA1B Missense_Mutation p.N329S 0.17 tolerated(0.52) benign(0.213) TCGA-BR-7851-01 9 14784441 14784441 G A FREM1 Nonsense_Mutation p.Q1457* 0.16 TCGA-BR-7851-01 9 14842486 14842486 C T FREM1 Silent p.P522P 0.23 TCGA-BR-7851-01 9 16437444 16437444 G A BNC2 Missense_Mutation p.R250W 0.21 deleterious(0) probably_damaging(0.999) TCGA-BR-7851-01 9 16870664 16870665 - A BNC2 5'UTR 0.15 TCGA-BR-7851-01 9 17330768 17330768 C T CNTLN Nonsense_Mutation p.R494* 0.31 TCGA-BR-7851-01 9 19516289 19516289 G A SLC24A2 Silent p.F616F 0.36 TCGA-BR-7851-01 9 21077644 21077644 G A IFNB1 Silent p.D75D 0.39 TCGA-BR-7851-01 9 21367439 21367439 A G IFNA13 Nonstop_Mutation p.*191Qext*? 0.27 TCGA-BR-7851-01 9 2646469 2646469 T C VLDLR Silent p.A540A 0.23 TCGA-BR-7851-01 9 34618718 34618719 - C DCTN3 Frame_Shift_Ins p.N46Efs*17 0.22 TCGA-BR-7851-01 9 35059794 35059794 C T VCP Missense_Mutation p.R567H 0.16 deleterious(0) possibly_damaging(0.777) TCGA-BR-7851-01 9 35449925 35449925 T C ATP8B5P RNA 0.24 TCGA-BR-7851-01 9 35792815 35792815 G A NPR2 Missense_Mutation p.R137H 0.35 tolerated(0.12) benign(0.052) TCGA-BR-7851-01 9 36170020 36170020 G A CCIN Missense_Mutation p.R174H 0.35 tolerated(0.62) benign(0.002) TCGA-BR-7851-01 9 41962580 41962580 G A RP11-204M4.2 RNA 0.09 TCGA-BR-7851-01 9 43627207 43627207 C T SPATA31A6 Missense_Mutation p.E494K 0.25 tolerated(0.18) benign(0.049) TCGA-BR-7851-01 9 4576594 4576594 C T SLC1A1 Missense_Mutation p.R342C 0.37 deleterious(0.01) benign(0.077) TCGA-BR-7851-01 9 5080260 5080260 T C JAK2 Silent p.P721P 0.09 TCGA-BR-7851-01 9 72962062 72962062 G A SMC5 Silent p.T883T 0.17 TCGA-BR-7851-01 9 78911644 78911644 A C PCSK5 Missense_Mutation p.E1129A 0.22 deleterious(0.01) benign(0.155) TCGA-BR-7851-01 9 8521488 8521488 G A PTPRD Silent p.G250G 0.35 TCGA-BR-7851-01 9 88203240 88203240 A G AGTPBP1 Missense_Mutation p.L919S 0.39 deleterious(0) probably_damaging(0.978) TCGA-BR-7851-01 9 88287483 88287483 G A AGTPBP1 Nonsense_Mutation p.R184* 0.32 TCGA-BR-7851-01 9 95030531 95030531 T C IARS Silent p.A452A 0.32 TCGA-BR-7851-01 9 95768325 95768325 G A FGD3 Missense_Mutation p.G234R 0.35 deleterious(0) probably_damaging(0.999) TCGA-BR-7851-01 9 98241295 98241295 C A PTCH1 Missense_Mutation p.R401M 0.47 deleterious(0) probably_damaging(0.992) TCGA-BR-7851-01 9 99220669 99220669 C T HABP4 Missense_Mutation p.R120W 0.23 deleterious(0) probably_damaging(0.998) TCGA-BR-7851-01 X 100667857 100667857 G - HNRNPH2 Frame_Shift_Del p.L296Yfs*20 0.34 TCGA-BR-7851-01 X 10166025 10166025 C T CLCN4 Missense_Mutation p.A160V 0.32 deleterious(0) probably_damaging(0.975) TCGA-BR-7851-01 X 10437743 10437743 C T MID1 Missense_Mutation p.V427I 0.58 tolerated(0.27) benign(0.009) TCGA-BR-7851-01 X 107925066 107925066 C T COL4A5 Silent p.G1388G 0.56 TCGA-BR-7851-01 X 109924819 109924819 C T CHRDL1 Missense_Mutation p.M349I 0.39 tolerated(0.44) benign(0.001) TCGA-BR-7851-01 X 110928333 110928333 T C ALG13 Splice_Site p.X128_splice 0.08 TCGA-BR-7851-01 X 114541133 114541133 G T LUZP4 Nonsense_Mutation p.G236* 0.09 TCGA-BR-7851-01 X 117910472 117910472 C G IL13RA1 Missense_Mutation p.L397V 0.82 tolerated(0.16) probably_damaging(0.971) TCGA-BR-7851-01 X 117959502 117959502 C T ZCCHC12 Missense_Mutation p.R99C 0.41 tolerated(0.18) possibly_damaging(0.901) TCGA-BR-7851-01 X 118893547 118893547 G A SOWAHD Missense_Mutation p.R306H 0.62 deleterious(0) probably_damaging(0.992) TCGA-BR-7851-01 X 120009386 120009386 G A CT47B1 Missense_Mutation p.P47S 0.17 deleterious(0.02) probably_damaging(0.998) TCGA-BR-7851-01 X 123205131 123205131 G A STAG2 Missense_Mutation p.D831N 0.59 tolerated(0.1) benign(0.003) TCGA-BR-7851-01 X 129380891 129380891 C A ZNF280C Missense_Mutation p.E40D 0.59 tolerated(1) benign(0.012) TCGA-BR-7851-01 X 134989590 134989590 G T SAGE1 Silent p.P332P 0.48 TCGA-BR-7851-01 X 138811117 138811117 G A ATP11C 3'UTR 0.44 TCGA-BR-7851-01 X 140271029 140271029 C T LDOC1 Missense_Mutation p.E60K 0.62 deleterious(0.02) benign(0.348) TCGA-BR-7851-01 X 142718541 142718541 A T SLITRK4 Silent p.L128L 0.57 TCGA-BR-7851-01 X 1428506 1428506 G A CSF2RA 3'UTR 0.26 TCGA-BR-7851-01 X 150349428 150349428 T C GPR50 Missense_Mutation p.V458A 0.04 deleterious_low_confidence(0.04) benign(0.027) TCGA-BR-7851-01 X 151821314 151821314 G T GABRQ Missense_Mutation p.G490V 0.48 tolerated(0.37) benign(0.012) TCGA-BR-7851-01 X 153071027 153071027 G A PDZD4 Missense_Mutation p.A195V 0.73 deleterious(0) probably_damaging(1) TCGA-BR-7851-01 X 153627879 153627879 A G RPL10 Missense_Mutation p.E45G 0.07 deleterious(0.02) benign(0.069) TCGA-BR-7851-01 X 155004072 155004072 G A SPRY3 Missense_Mutation p.S180N 0.28 tolerated(0.86) benign(0.074) TCGA-BR-7851-01 X 215873 215873 C T PLCXD1 Silent p.S281S 0.50 TCGA-BR-7851-01 X 37028265 37028265 C - FAM47C Frame_Shift_Del p.P596Rfs*229 0.34 TCGA-BR-7851-01 X 41027442 41027442 T C USP9X Silent p.H869H 0.65 TCGA-BR-7851-01 X 47485906 47485906 C T CFP Nonsense_Mutation p.W318* 0.50 TCGA-BR-7851-01 X 49066409 49066409 G - CACNA1F Frame_Shift_Del p.P1572Hfs*17 0.47 TCGA-BR-7851-01 X 50146591 50146591 G A DGKK RNA 0.55 TCGA-BR-7851-01 X 51150061 51150061 G A CXorf67 Missense_Mutation p.A65T 0.48 deleterious(0.03) probably_damaging(0.99) TCGA-BR-7851-01 X 54473854 54473854 T C FGD1 Missense_Mutation p.I824V 0.50 tolerated(0.34) benign(0.031) TCGA-BR-7851-01 X 54776440 54776440 C T ITIH6 Missense_Mutation p.R1277K 0.45 tolerated(1) benign(0.002) TCGA-BR-7851-01 X 55287036 55287036 G A PAGE3 Missense_Mutation p.R84C 0.22 tolerated(0.28) probably_damaging(0.965) TCGA-BR-7851-01 X 57515400 57515400 T G FAAH2 3'UTR 0.30 TCGA-BR-7851-01 X 69261775 69261775 T A AWAT2 Silent p.P295P 0.47 TCGA-BR-7851-01 X 69478728 69478728 C A P2RY4 Silent p.V249V 0.50 TCGA-BR-7851-01 X 70598812 70598812 C T TAF1 Missense_Mutation p.R451C 0.63 deleterious(0) possibly_damaging(0.828) TCGA-BR-7851-01 X 70618466 70618466 G A TAF1 Missense_Mutation p.R1242Q 0.48 deleterious(0.04) benign(0.056) TCGA-BR-7851-01 X 91873632 91873632 G A PCDH11X Missense_Mutation p.S1246N 0.06 deleterious_low_confidence(0.01) possibly_damaging(0.841) TCGA-BR-7851-01 X 9862480 9862480 G A SHROOM2 Missense_Mutation p.V178I 0.58 tolerated(0.13) possibly_damaging(0.75) TCGA-BR-7851-01 Y 15411007 15411007 A - UTY Frame_Shift_Del p.L1136* 0.39 TCGA-BR-7851-01 Y 16942305 16942305 G A NLGN4Y Missense_Mutation p.G503S 0.60 tolerated(0.11) possibly_damaging(0.461) TCGA-BR-7901-01 10 105199528 105199528 G C PDCD11 Missense_Mutation p.A1351P 0.07 tolerated(0.06) possibly_damaging(0.756) TCGA-BR-7901-01 10 105215108 105215108 C T CALHM1 Missense_Mutation p.E318K 0.08 tolerated(0.53) benign(0.003) TCGA-BR-7901-01 10 106401694 106401694 G C SORCS3 Missense_Mutation p.W203C 0.12 deleterious(0) probably_damaging(0.982) TCGA-BR-7901-01 10 113917086 113917086 G C GPAM Missense_Mutation p.P681R 0.08 deleterious(0.01) benign(0.333) TCGA-BR-7901-01 10 115605541 115605541 T A DCLRE1A Missense_Mutation p.N761Y 0.27 deleterious(0) possibly_damaging(0.793) TCGA-BR-7901-01 10 133107428 133107428 A T TCERG1L Silent p.I159I 0.13 TCGA-BR-7901-01 10 38121107 38121107 C T ZNF248 Silent p.K392K 0.10 TCGA-BR-7901-01 10 98087281 98087281 G A DNTT Missense_Mutation p.V311I 0.09 tolerated(0.58) benign(0.025) TCGA-BR-7901-01 11 101775550 101775550 G A ANGPTL5 Missense_Mutation p.S145L 0.08 deleterious(0.01) possibly_damaging(0.548) TCGA-BR-7901-01 11 103152957 103152957 C T DYNC2H1 Missense_Mutation p.A3611V 0.10 benign(0.001) TCGA-BR-7901-01 11 113235630 113235630 T G TTC12 Silent p.G630G 0.07 TCGA-BR-7901-01 11 120348905 120348905 A C ARHGEF12 Missense_Mutation p.K1191N 0.20 tolerated_low_confidence(0.15) benign(0.027) TCGA-BR-7901-01 11 20948910 20948910 T G NELL1 Silent p.T272T 0.06 TCGA-BR-7901-01 11 20959356 20959356 T G NELL1 Missense_Mutation p.V341G 0.07 tolerated(0.12) benign(0.138) TCGA-BR-7901-01 11 40136487 40136487 A T LRRC4C Silent p.S452S 0.07 TCGA-BR-7901-01 11 48511093 48511093 T A OR4A47 Missense_Mutation p.V250D 0.08 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-BR-7901-01 11 5020810 5020810 T C OR51L1 Missense_Mutation p.Y200H 0.13 deleterious(0) probably_damaging(0.999) TCGA-BR-7901-01 11 55890577 55890577 T A OR8H3 Silent p.S243S 0.09 TCGA-BR-7901-01 11 56127847 56127847 A G OR8J1 Missense_Mutation p.N42S 0.05 deleterious(0) probably_damaging(0.999) TCGA-BR-7901-01 11 57427134 57427134 G A CLP1 Silent p.K62K 0.05 TCGA-BR-7901-01 11 66411193 66411193 C T RBM14-RBM4 Missense_Mutation p.R204W 0.34 deleterious(0.01) unknown(0) TCGA-BR-7901-01 11 6867680 6867680 C G OR10A5 Missense_Mutation p.S256C 0.05 deleterious(0.01) possibly_damaging(0.608) TCGA-BR-7901-01 11 6867694 6867694 T G OR10A5 Missense_Mutation p.F261V 0.05 deleterious(0.04) probably_damaging(1) TCGA-BR-7901-01 11 73008014 73008014 G A P2RY6 Missense_Mutation p.V151M 0.10 deleterious(0) probably_damaging(0.953) TCGA-BR-7901-01 11 73844002 73844002 A G C2CD3 Silent p.S368S 0.25 TCGA-BR-7901-01 11 7718031 7718031 A T OVCH2 Silent p.S374S 0.08 TCGA-BR-7901-01 11 93808527 93808527 C T HEPHL1 Silent p.G564G 0.07 TCGA-BR-7901-01 12 102117024 102117024 A G CHPT1 Missense_Mutation p.T287A 0.28 tolerated(0.27) benign(0.005) TCGA-BR-7901-01 12 106464550 106464550 A C NUAK1 Splice_Site p.X278_splice 0.08 TCGA-BR-7901-01 12 129822217 129822217 T A TMEM132D Missense_Mutation p.S421C 0.09 tolerated(0.09) benign(0.069) TCGA-BR-7901-01 12 25261681 25261681 T C CASC1 Missense_Mutation p.Q657R 0.17 tolerated(0.07) benign(0.222) TCGA-BR-7901-01 12 56568472 56568472 G A SMARCC2 Missense_Mutation p.R487C 0.05 deleterious(0) possibly_damaging(0.898) TCGA-BR-7901-01 12 70003953 70003953 A G LRRC10 Silent p.N222N 0.14 TCGA-BR-7901-01 12 70974970 70974970 G A PTPRB Silent p.I808I 0.04 TCGA-BR-7901-01 12 78604244 78604244 A G NAV3 Missense_Mutation p.S2347G 0.08 deleterious(0) benign(0.366) TCGA-BR-7901-01 13 21205209 21205209 G C IFT88 Missense_Mutation p.A461P 0.07 deleterious(0) probably_damaging(0.998) TCGA-BR-7901-01 13 38211114 38211114 C A TRPC4 Missense_Mutation p.D959Y 0.11 tolerated_low_confidence(0.07) benign(0.244) TCGA-BR-7901-01 13 38211582 38211582 C T TRPC4 Missense_Mutation p.D803N 0.09 tolerated_low_confidence(0.19) possibly_damaging(0.71) TCGA-BR-7901-01 13 43896599 43896599 G A ENOX1 Silent p.I394I 0.21 TCGA-BR-7901-01 13 61084866 61084866 A T TDRD3 Missense_Mutation p.K373I 0.08 deleterious(0) probably_damaging(1) TCGA-BR-7901-01 13 72440223 72440223 G A DACH1 Missense_Mutation p.H229Y 0.09 probably_damaging(0.999) TCGA-BR-7901-01 13 78477411 78477411 C A EDNRB Silent p.V317V 0.09 TCGA-BR-7901-01 13 84454439 84454439 T G SLITRK1 Missense_Mutation p.I402L 0.08 deleterious(0) benign(0.001) TCGA-BR-7901-01 14 34269031 34269031 G A NPAS3 Silent p.A506A 0.09 TCGA-BR-7901-01 14 51224398 51224398 C T NIN Missense_Mutation p.G1117E 0.04 tolerated(0.15) benign(0.392) TCGA-BR-7901-01 14 51224423 51224423 C G NIN Missense_Mutation p.D1109H 0.04 deleterious(0.01) possibly_damaging(0.845) TCGA-BR-7901-01 14 56107659 56107659 T A KTN1 Silent p.A664A 0.09 TCGA-BR-7901-01 14 67826414 67826414 A T ATP6V1D Translation_Start_Site p.M1? 0.10 deleterious(0) probably_damaging(0.999) TCGA-BR-7901-01 14 73140966 73140966 C T DPF3 Missense_Mutation p.A285T 0.29 tolerated(0.15) benign(0.055) TCGA-BR-7901-01 14 91780011 91780011 G A CCDC88C Missense_Mutation p.R717C 0.18 deleterious(0) probably_damaging(0.953) TCGA-BR-7901-01 14 99640530 99640530 C T BCL11B Silent p.L881L 0.06 TCGA-BR-7901-01 15 43817620 43817620 C G MAP1A Missense_Mutation p.L1317V 0.17 benign(0.106) TCGA-BR-7901-01 15 56387980 56387980 G C RFX7 Missense_Mutation p.P649R 0.18 deleterious_low_confidence(0.04) benign(0.046) TCGA-BR-7901-01 15 63089448 63089448 G A TLN2 Silent p.L2027L 0.22 TCGA-BR-7901-01 15 72302748 72302748 A C MYO9A Missense_Mutation p.F399C 0.23 deleterious(0) probably_damaging(0.969) TCGA-BR-7901-01 16 1272743 1272743 C G TPSG1 Silent p.R140R 0.08 TCGA-BR-7901-01 16 20497938 20497938 A C ACSM2A Missense_Mutation p.I558L 0.05 deleterious(0) benign(0.435) TCGA-BR-7901-01 16 31072937 31072937 C T ZNF668 Missense_Mutation p.V461M 0.04 tolerated_low_confidence(0.15) benign(0.004) TCGA-BR-7901-01 16 31332822 31332822 T G ITGAM Missense_Mutation p.F627V 0.06 deleterious(0) probably_damaging(1) TCGA-BR-7901-01 16 4790653 4790653 C T C16orf71 Missense_Mutation p.S259L 0.12 deleterious(0.02) probably_damaging(0.979) TCGA-BR-7901-01 16 67943234 67943234 C T PSKH1 Silent p.D194D 0.10 TCGA-BR-7901-01 16 75662592 75662592 C T KARS Missense_Mutation p.D552N 0.08 deleterious(0.01) possibly_damaging(0.725) TCGA-BR-7901-01 17 11684386 11684386 A G DNAH9 Missense_Mutation p.K2538R 0.12 benign(0.019) TCGA-BR-7901-01 17 1489235 1489235 C T SLC43A2 Missense_Mutation p.E397K 0.22 tolerated(0.43) benign(0.004) TCGA-BR-7901-01 17 27043058 27043058 G T RAB34 Silent p.V112V 0.07 TCGA-BR-7901-01 17 28418902 28418902 C G EFCAB5 Silent p.V1317V 0.09 TCGA-BR-7901-01 17 29646016 29646016 C T EVI2A Missense_Mutation p.E29K 0.07 tolerated(0.1) benign(0.037) TCGA-BR-7901-01 17 53481221 53481221 A C MMD Missense_Mutation p.L118R 0.28 deleterious(0) probably_damaging(0.997) TCGA-BR-7901-01 17 62122824 62122824 C A ERN1 Nonsense_Mutation p.E850* 0.07 TCGA-BR-7901-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.30 tolerated(0.13) possibly_damaging(0.631) TCGA-BR-7901-01 17 8167849 8167849 G C PFAS Missense_Mutation p.S660T 0.07 tolerated(1) benign(0.001) TCGA-BR-7901-01 18 21124371 21124371 G A NPC1 Silent p.V689V 0.08 TCGA-BR-7901-01 18 29867375 29867375 G A GAREM Silent p.L395L 0.14 TCGA-BR-7901-01 18 55143752 55143752 C T ONECUT2 Missense_Mutation p.R438C 0.14 deleterious(0) probably_damaging(0.977) TCGA-BR-7901-01 18 677406 677406 C A ENOSF1 Nonsense_Mutation p.E370* 0.05 TCGA-BR-7901-01 18 74607072 74607072 C A ZNF236 Silent p.T505T 0.28 TCGA-BR-7901-01 18 74607093 74607093 C G ZNF236 Missense_Mutation p.C512W 0.23 deleterious(0) probably_damaging(1) TCGA-BR-7901-01 19 11488878 11488883 GCAAGA - EPOR In_Frame_Del p.L435_L436del 0.35 TCGA-BR-7901-01 19 15271470 15271470 G A NOTCH3 3'UTR 0.21 TCGA-BR-7901-01 19 16204371 16204371 A G TPM4 Missense_Mutation p.E222G 0.11 deleterious(0.01) probably_damaging(1) TCGA-BR-7901-01 19 31769778 31769778 T G TSHZ3 Missense_Mutation p.E307D 0.16 deleterious(0) probably_damaging(0.997) TCGA-BR-7901-01 19 42585010 42585010 C T ZNF574 Missense_Mutation p.T751M 0.12 deleterious(0.05) probably_damaging(0.93) TCGA-BR-7901-01 19 45997476 45997476 C T RTN2 Silent p.Q254Q 0.09 TCGA-BR-7901-01 19 46195984 46195984 G C QPCTL Missense_Mutation p.R8P 0.21 deleterious_low_confidence(0) unknown(0) TCGA-BR-7901-01 19 4793212 4793212 G A FEM1A Missense_Mutation p.R449Q 0.09 tolerated(0.19) benign(0.439) TCGA-BR-7901-01 19 48259010 48259010 C A GLTSCR2 Intron 0.25 TCGA-BR-7901-01 19 52447732 52447732 A T ZNF613 Missense_Mutation p.N199I 0.11 deleterious(0.04) benign(0.002) TCGA-BR-7901-01 19 53643983 53643983 G A ZNF347 Nonsense_Mutation p.Q701* 0.09 TCGA-BR-7901-01 19 56466706 56466706 G A NLRP8 Missense_Mutation p.V428I 0.46 tolerated(0.28) benign(0.073) TCGA-BR-7901-01 19 5778566 5778566 C T CATSPERD Missense_Mutation p.A759V 0.08 tolerated(0.62) benign(0.001) TCGA-BR-7901-01 19 58059343 58059343 T C ZNF550 Missense_Mutation p.H49R 0.11 tolerated(0.21) benign(0) TCGA-BR-7901-01 19 8536272 8536272 C T HNRNPM Silent p.L320L 0.11 TCGA-BR-7901-01 1 10687392 10687392 A G PEX14 Missense_Mutation p.N217D 0.34 tolerated(0.47) benign(0.075) TCGA-BR-7901-01 1 112045631 112045631 C T ADORA3 Missense_Mutation p.V116I 0.16 tolerated_low_confidence(0.4) benign(0.02) TCGA-BR-7901-01 1 152185618 152185618 G C HRNR Silent p.L2829L 0.06 TCGA-BR-7901-01 1 152185707 152185707 G C HRNR Missense_Mutation p.Q2800E 0.10 unknown(0) TCGA-BR-7901-01 1 152185775 152185775 G C HRNR Missense_Mutation p.S2777C 0.07 unknown(0) TCGA-BR-7901-01 1 152188311 152188311 G C HRNR Missense_Mutation p.Q1932E 0.02 unknown(0) TCGA-BR-7901-01 1 152286772 152286772 C A FLG Missense_Mutation p.R197M 0.05 probably_damaging(0.922) TCGA-BR-7901-01 1 152330090 152330090 T C FLG2 Missense_Mutation p.M58V 0.06 unknown(0) TCGA-BR-7901-01 1 152659558 152659558 T C LCE2B Missense_Mutation p.L80P 0.06 tolerated_low_confidence(0.22) unknown(0) TCGA-BR-7901-01 1 152732493 152732493 T G KPRP Silent p.T143T 0.17 TCGA-BR-7901-01 1 152975747 152975747 A C SPRR3 Missense_Mutation p.K84T 0.07 tolerated(0.28) benign(0.113) TCGA-BR-7901-01 1 158435654 158435654 G A OR10K1 Missense_Mutation p.M101I 0.06 deleterious(0.01) probably_damaging(0.989) TCGA-BR-7901-01 1 158639573 158639573 C T SPTA1 Missense_Mutation p.V535I 0.09 tolerated(0.14) benign(0.012) TCGA-BR-7901-01 1 158724937 158724937 C T OR6K6 Missense_Mutation p.S111F 0.04 tolerated(0.06) benign(0.031) TCGA-BR-7901-01 1 158819074 158819074 A C MNDA 3'UTR 0.21 TCGA-BR-7901-01 1 16248837 16248837 G A SPEN Missense_Mutation p.E615K 0.05 probably_damaging(0.991) TCGA-BR-7901-01 1 163044232 163044232 G A RGS4 Missense_Mutation p.R264H 0.04 deleterious(0.01) possibly_damaging(0.823) TCGA-BR-7901-01 1 165175151 165175151 C T LMX1A Missense_Mutation p.R313Q 0.17 tolerated(0.83) benign(0.002) TCGA-BR-7901-01 1 186324590 186324590 C T TPR Missense_Mutation p.R708Q 0.11 benign(0.238) TCGA-BR-7901-01 1 196748352 196748352 G A CFHR3 Missense_Mutation p.R40K 0.13 tolerated(0.36) probably_damaging(0.917) TCGA-BR-7901-01 1 196749078 196749078 T C CFHR3 Silent p.S135S 0.06 TCGA-BR-7901-01 1 198711490 198711490 A G PTPRC Silent p.Q897Q 0.11 TCGA-BR-7901-01 1 212156066 212156066 G A INTS7 Missense_Mutation p.H362Y 0.15 tolerated(0.73) possibly_damaging(0.491) TCGA-BR-7901-01 1 236914822 236914822 G C ACTN2 Missense_Mutation p.G570A 0.10 tolerated(0.35) benign(0.003) TCGA-BR-7901-01 1 237617865 237617865 C T RYR2 Silent p.F489F 0.24 TCGA-BR-7901-01 1 242511425 242511425 A T PLD5 Missense_Mutation p.N103K 0.04 tolerated(0.1) probably_damaging(0.99) TCGA-BR-7901-01 1 248551074 248551074 C A OR2T6 Silent p.L55L 0.52 TCGA-BR-7901-01 1 248637588 248637588 A G OR2T3 Missense_Mutation p.R313G 0.04 tolerated(0.36) benign(0.001) TCGA-BR-7901-01 1 248756332 248756332 T A OR2T10 Silent p.T246T 0.15 TCGA-BR-7901-01 1 43908169 43908169 G A SZT2 Silent p.A2620A 0.13 TCGA-BR-7901-01 1 4832465 4832465 C A AJAP1 Missense_Mutation p.T348K 0.07 deleterious(0) possibly_damaging(0.742) TCGA-BR-7901-01 1 7879395 7879395 G T PER3 Missense_Mutation p.V517L 0.06 tolerated(0.42) benign(0) TCGA-BR-7901-01 1 97915676 97915676 T G DPYD Missense_Mutation p.E615A 0.10 deleterious(0) probably_damaging(0.999) TCGA-BR-7901-01 20 30803221 30803221 G A POFUT1 Silent p.Q132Q 0.03 TCGA-BR-7901-01 20 33585431 33585431 G C MYH7B Silent p.L1287L 0.08 TCGA-BR-7901-01 20 50238633 50238633 C T ATP9A Missense_Mutation p.D699N 0.07 tolerated(0.49) benign(0.02) TCGA-BR-7901-01 20 6022187 6022187 G C LRRN4 Missense_Mutation p.C568W 0.05 deleterious(0) probably_damaging(1) TCGA-BR-7901-01 21 27347518 27347518 A G APP Silent p.S441S 0.05 TCGA-BR-7901-01 21 31797958 31797958 A G KRTAP13-3 Silent p.S91S 0.10 TCGA-BR-7901-01 21 32493072 32493072 C T TIAM1 Missense_Mutation p.A1464T 0.15 tolerated(0.57) benign(0.001) TCGA-BR-7901-01 21 42080477 42080477 A C DSCAM Silent p.P88P 0.13 TCGA-BR-7901-01 22 20103938 20103938 T C TRMT2A Silent p.K74K 0.12 TCGA-BR-7901-01 22 20103951 20103951 G T RANBP1 5'Flank 0.14 TCGA-BR-7901-01 22 22556244 22556244 C T IGLV11-55 Missense_Mutation p.R20W 0.40 deleterious(0.01) benign(0.003) TCGA-BR-7901-01 22 51045110 51045110 G A MAPK8IP2 Missense_Mutation p.V716I 0.20 deleterious(0.01) possibly_damaging(0.54) TCGA-BR-7901-01 2 100623915 100623915 T A AFF3 Missense_Mutation p.K86M 0.08 deleterious(0) probably_damaging(0.999) TCGA-BR-7901-01 2 109380603 109380603 G A RANBP2 Missense_Mutation p.R1203H 0.09 deleterious(0) benign(0.034) TCGA-BR-7901-01 2 116548896 116548896 T G DPP10 Missense_Mutation p.F559C 0.14 deleterious(0) probably_damaging(0.988) TCGA-BR-7901-01 2 136575081 136575081 C T LCT Missense_Mutation p.E513K 0.07 tolerated(0.13) possibly_damaging(0.515) TCGA-BR-7901-01 2 139326627 139326627 C T SPOPL Missense_Mutation p.R386C 0.05 tolerated(0.28) benign(0.021) TCGA-BR-7901-01 2 144704597 144704597 G T GTDC1 3'UTR 0.15 TCGA-BR-7901-01 2 145156214 145156214 T G ZEB2 Missense_Mutation p.N847T 0.08 tolerated(0.09) benign(0.026) TCGA-BR-7901-01 2 175437098 175437098 A G WIPF1 Silent p.S145S 0.18 TCGA-BR-7901-01 2 176983843 176983843 G A HOXD10 Missense_Mutation p.V303I 0.24 tolerated(0.34) benign(0.313) TCGA-BR-7901-01 2 185801262 185801262 T G ZNF804A Missense_Mutation p.V380G 0.12 tolerated(0.54) benign(0.055) TCGA-BR-7901-01 2 1926913 1926913 T C MYT1L Missense_Mutation p.K210E 0.11 deleterious(0) probably_damaging(0.999) TCGA-BR-7901-01 2 202002984 202002984 C T CFLAR Intron 0.18 TCGA-BR-7901-01 2 202672278 202672278 C T CDK15 Missense_Mutation p.A62V 0.17 deleterious_low_confidence(0.03) benign(0.127) TCGA-BR-7901-01 2 206892937 206892937 C T INO80D Missense_Mutation p.R399Q 0.25 tolerated(0.16) benign(0.026) TCGA-BR-7901-01 2 212251754 212251754 A C ERBB4 Missense_Mutation p.F1102C 0.08 tolerated(0.11) benign(0.002) TCGA-BR-7901-01 2 217279594 217279594 A G SMARCAL1 Missense_Mutation p.N56S 0.06 tolerated_low_confidence(0.36) benign(0.004) TCGA-BR-7901-01 2 220136767 220136767 C T TUBA4B RNA 0.12 TCGA-BR-7901-01 2 33817259 33817259 G C FAM98A Missense_Mutation p.F75L 0.03 tolerated(0.12) possibly_damaging(0.801) TCGA-BR-7901-01 2 69870090 69870090 G A AAK1 Missense_Mutation p.S28L 0.23 deleterious(0.01) unknown(0) TCGA-BR-7901-01 2 70377631 70377631 G C C2orf42 Missense_Mutation p.P528A 0.04 deleterious(0.01) probably_damaging(0.98) TCGA-BR-7901-01 3 100951814 100951814 T A IMPG2 Missense_Mutation p.K1015M 0.13 deleterious(0) probably_damaging(0.999) TCGA-BR-7901-01 3 1269633 1269633 T G CNTN6 Missense_Mutation p.L105R 0.16 deleterious(0.03) benign(0.134) TCGA-BR-7901-01 3 12977720 12977720 C G IQSEC1 Missense_Mutation p.E280Q 0.08 tolerated(0.39) benign(0.056) TCGA-BR-7901-01 3 165547928 165547928 T G BCHE Missense_Mutation p.Q298H 0.14 deleterious(0.02) benign(0.032) TCGA-BR-7901-01 3 190986175 190986175 T C UTS2B 3'UTR 0.22 TCGA-BR-7901-01 3 2908441 2908441 A G CNTN4 Missense_Mutation p.S154G 0.18 tolerated(0.23) benign(0.325) TCGA-BR-7901-01 3 45132693 45132693 G T CDCP1 Missense_Mutation p.F655L 0.05 deleterious(0) probably_damaging(0.999) TCGA-BR-7901-01 3 53909990 53909990 G C ACTR8 Missense_Mutation p.S299C 0.09 deleterious(0.04) probably_damaging(0.984) TCGA-BR-7901-01 3 57107719 57107719 C T SPATA12 5'UTR 0.22 TCGA-BR-7901-01 4 108940820 108940820 G T HADH Nonsense_Mutation p.E182* 0.04 TCGA-BR-7901-01 4 126412149 126412149 T A FAT4 Silent p.P4724P 0.08 TCGA-BR-7901-01 4 144135153 144135153 A - USP38 Frame_Shift_Del p.T677Pfs*2 0.15 TCGA-BR-7901-01 4 185691577 185691577 G A ACSL1 Silent p.A323A 0.07 TCGA-BR-7901-01 4 20618698 20618698 A T SLIT2 Missense_Mutation p.K1338M 0.07 tolerated(0.05) possibly_damaging(0.838) TCGA-BR-7901-01 4 4303731 4303731 T A ZBTB49 Missense_Mutation p.N56K 0.05 deleterious(0.01) possibly_damaging(0.521) TCGA-BR-7901-01 4 52883456 52883456 T C LRRC66 Silent p.L108L 0.18 TCGA-BR-7901-01 4 6374386 6374386 G C PPP2R2C Missense_Mutation p.S163R 0.08 tolerated(0.55) benign(0.006) TCGA-BR-7901-01 5 101834337 101834337 T C SLCO6A1 Missense_Mutation p.K71R 0.11 tolerated(0.51) benign(0.003) TCGA-BR-7901-01 5 140306935 140306936 - GGG PCDHAC1 In_Frame_Ins p.G154dup 0.27 TCGA-BR-7901-01 5 140553947 140553947 G A PCDHB7 Missense_Mutation p.G511S 0.06 deleterious_low_confidence(0) probably_damaging(0.959) TCGA-BR-7901-01 5 171766824 171766824 T C SH3PXD2B Missense_Mutation p.S429G 0.23 deleterious(0.01) possibly_damaging(0.777) TCGA-BR-7901-01 5 41149516 41149516 T G C6 Missense_Mutation p.K817T 0.09 tolerated(0.4) benign(0.026) TCGA-BR-7901-01 5 43040209 43040209 C T ANXA2R 5'UTR 0.26 TCGA-BR-7901-01 5 837555 837555 G A ZDHHC11 Silent p.N275N 0.05 TCGA-BR-7901-01 5 85578690 85578690 G A NBPF22P RNA 0.16 TCGA-BR-7901-01 6 100054924 100054924 C G PRDM13 Missense_Mutation p.A5G 0.31 deleterious_low_confidence(0.02) benign(0.033) TCGA-BR-7901-01 6 112020843 112020843 G A FYN Intron 0.10 TCGA-BR-7901-01 6 118886759 118886759 T G CEP85L Missense_Mutation p.Y321S 0.06 tolerated(0.46) benign(0.206) TCGA-BR-7901-01 6 125397989 125397989 C T RNF217 Nonsense_Mutation p.R198* 0.09 TCGA-BR-7901-01 6 133769263 133769263 G T EYA4 Missense_Mutation p.V75F 0.06 deleterious_low_confidence(0.01) benign(0.408) TCGA-BR-7901-01 6 139694714 139694714 T A CITED2 Missense_Mutation p.Y123F 0.04 deleterious(0.02) benign(0.222) TCGA-BR-7901-01 6 152542686 152542686 T G SYNE1 Missense_Mutation p.Q7177H 0.11 benign(0.046) TCGA-BR-7901-01 6 26271499 26271499 T C HIST1H3G Silent p.K38K 0.39 TCGA-BR-7901-01 6 28294500 28294500 G A ZSCAN31 Nonsense_Mutation p.R222* 0.06 TCGA-BR-7901-01 6 29012626 29012626 T C OR2W1 Silent p.S109S 0.06 TCGA-BR-7901-01 6 76712691 76712691 A C IMPG1 Missense_Mutation p.L412R 0.17 deleterious(0.04) possibly_damaging(0.794) TCGA-BR-7901-01 6 83806789 83806789 C T DOPEY1 Silent p.S31S 0.05 TCGA-BR-7901-01 7 107254166 107254166 G A BCAP29 Missense_Mutation p.G253D 0.08 deleterious_low_confidence(0.03) benign(0.047) TCGA-BR-7901-01 7 1132151 1132151 G A GPER1 Missense_Mutation p.A263T 0.10 tolerated(0.13) benign(0.272) TCGA-BR-7901-01 7 11676533 11676533 C A THSD7A Missense_Mutation p.R82S 0.06 deleterious(0) probably_damaging(0.999) TCGA-BR-7901-01 7 117432038 117432038 G A CTTNBP2 Silent p.N404N 0.09 TCGA-BR-7901-01 7 126079105 126079105 T G GRM8 3'UTR 0.10 TCGA-BR-7901-01 7 23547125 23547125 C T TRA2A Silent p.L185L 0.09 TCGA-BR-7901-01 7 42004358 42004358 T G GLI3 Missense_Mutation p.N1438T 0.07 tolerated(0.08) benign(0.11) TCGA-BR-7901-01 7 45701777 45701777 C A ADCY1 Silent p.P523P 0.68 TCGA-BR-7901-01 7 50070871 50070871 C T ZPBP Missense_Mutation p.A175T 0.05 tolerated(0.11) probably_damaging(0.986) TCGA-BR-7901-01 7 57187980 57187980 T C ZNF479 Missense_Mutation p.Y381C 0.05 deleterious(0.03) benign(0.087) TCGA-BR-7901-01 7 72984996 72984996 C T TBL2 Silent p.A395A 0.11 TCGA-BR-7901-01 7 84727149 84727149 A T SEMA3D Missense_Mutation p.L95Q 0.05 deleterious(0) possibly_damaging(0.908) TCGA-BR-7901-01 7 87179355 87179355 G A ABCB1 Nonsense_Mutation p.Q456* 0.09 TCGA-BR-7901-01 7 94039585 94039585 A T COL1A2 Missense_Mutation p.E356V 0.12 probably_damaging(0.987) TCGA-BR-7901-01 8 108334284 108334284 T G ANGPT1 Missense_Mutation p.K216N 0.15 deleterious(0.01) benign(0.411) TCGA-BR-7901-01 8 110980292 110980292 T C KCNV1 3'UTR 0.35 TCGA-BR-7901-01 8 116617214 116617214 T G TRPS1 Missense_Mutation p.T328P 0.14 deleterious_low_confidence(0) possibly_damaging(0.8) TCGA-BR-7901-01 8 144812561 144812561 C T FAM83H Silent p.V64V 0.09 TCGA-BR-7901-01 8 145770695 145770695 T A ARHGAP39 Missense_Mutation p.K820M 0.08 deleterious(0) possibly_damaging(0.57) TCGA-BR-7901-01 8 32599561 32599561 A G NRG1 Intron 0.07 TCGA-BR-7901-01 8 33370157 33370157 G C TTI2 5'UTR 0.13 TCGA-BR-7901-01 8 68931899 68931899 T C PREX2 Missense_Mutation p.L110P 0.14 deleterious(0) probably_damaging(0.999) TCGA-BR-7901-01 8 69069612 69069612 T C PREX2 Silent p.F1429F 0.10 TCGA-BR-7901-01 8 80954873 80954873 T C TPD52 Silent p.E179E 0.08 TCGA-BR-7901-01 8 88365898 88365898 T C CNBD1 Missense_Mutation p.L396P 0.12 deleterious(0) probably_damaging(0.999) TCGA-BR-7901-01 9 123205914 123205915 - TGC CDK5RAP2 In_Frame_Ins p.Q1044dup 0.41 TCGA-BR-7901-01 9 125796920 125796920 C T GPR21 Silent p.V25V 0.07 TCGA-BR-7901-01 9 135505739 135505739 C T DDX31 Missense_Mutation p.A620T 0.09 deleterious(0) probably_damaging(0.999) TCGA-BR-7901-01 9 140438250 140438250 G T PNPLA7 Missense_Mutation p.N97K 0.05 tolerated(0.29) benign(0.287) TCGA-BR-7901-01 9 19786062 19786062 A T SLC24A2 Missense_Mutation p.L268H 0.19 tolerated(0.17) probably_damaging(0.967) TCGA-BR-7901-01 9 8521544 8521544 G A PTPRD Missense_Mutation p.R232C 0.16 deleterious(0) probably_damaging(0.996) TCGA-BR-7901-01 X 127185030 127185030 A T ACTRT1 3'UTR 0.17 TCGA-BR-7901-01 X 140996300 140996300 T A MAGEC1 Missense_Mutation p.F1037Y 0.14 tolerated(0.22) unknown(0) TCGA-BR-7901-01 X 141291458 141291458 A G MAGEC2 Missense_Mutation p.S106P 0.09 tolerated(0.41) possibly_damaging(0.887) TCGA-BR-7901-01 X 153664188 153664188 G A ATP6AP1 Missense_Mutation p.R455H 0.11 deleterious(0) probably_damaging(0.988) TCGA-BR-7901-01 X 26212113 26212113 T C MAGEB6 Silent p.G50G 0.14 TCGA-BR-7901-01 X 49597160 49597160 G C PAGE4 Missense_Mutation p.D67H 0.14 deleterious(0.02) possibly_damaging(0.844) TCGA-BR-7901-01 X 86924353 86924353 T G KLHL4 Missense_Mutation p.F708V 0.24 deleterious_low_confidence(0.01) benign(0.107) TCGA-BR-7901-01 X 91131794 91131794 T C PCDH11X Silent p.F185F 0.16 TCGA-BR-7957-01 11 5841963 5841963 G A OR52N2 Missense_Mutation p.R133H 0.16 tolerated(0.16) benign(0.012) TCGA-BR-7957-01 11 65721100 65721100 G A TSGA10IP RNA 0.09 TCGA-BR-7957-01 12 130935771 130935771 G C RIMBP2 Missense_Mutation p.S141C 0.10 deleterious(0.01) possibly_damaging(0.469) TCGA-BR-7957-01 12 23687217 23687217 T A SOX5 Missense_Mutation p.E743V 0.13 deleterious(0) benign(0.278) TCGA-BR-7957-01 12 5021648 5021648 G A KCNA1 Silent p.V368V 0.09 TCGA-BR-7957-01 13 41657016 41657016 C A WBP4 Missense_Mutation p.S366Y 0.10 deleterious(0) possibly_damaging(0.896) TCGA-BR-7957-01 14 23586911 23586911 G A CEBPE Missense_Mutation p.R211W 0.08 deleterious(0) probably_damaging(0.996) TCGA-BR-7957-01 14 45650889 45650889 G A FANCM Missense_Mutation p.R1456H 0.11 tolerated(0.07) benign(0.032) TCGA-BR-7957-01 14 64457685 64457685 C T SYNE2 Missense_Mutation p.A833V 0.17 benign(0.006) TCGA-BR-7957-01 14 69814660 69814660 A G GALNT16 Missense_Mutation p.M494V 0.09 tolerated(0.46) benign(0) TCGA-BR-7957-01 14 75570609 75570609 C T NEK9 Missense_Mutation p.C556Y 0.08 deleterious(0.01) probably_damaging(0.945) TCGA-BR-7957-01 14 77845346 77845346 G A SAMD15 Missense_Mutation p.E529K 0.12 tolerated(0.17) benign(0.002) TCGA-BR-7957-01 16 23695207 23695207 C A PLK1 Missense_Mutation p.A278D 0.04 deleterious(0) probably_damaging(0.998) TCGA-BR-7957-01 17 19748626 19748626 C T ULK2 Silent p.P178P 0.09 TCGA-BR-7957-01 17 37868208 37868208 C T ERBB2 Missense_Mutation p.S310F 0.04 deleterious(0) probably_damaging(0.994) TCGA-BR-7957-01 17 63537662 63537662 G A AXIN2 Missense_Mutation p.P324S 0.07 deleterious(0) probably_damaging(1) TCGA-BR-7957-01 17 7836460 7836460 A C CNTROB Silent p.S21S 0.16 TCGA-BR-7957-01 19 12876768 12876768 C A HOOK2 Silent p.L524L 0.17 TCGA-BR-7957-01 19 15918646 15918646 C T OR10H1 Missense_Mutation p.V68I 0.19 tolerated(1) benign(0) TCGA-BR-7957-01 19 36395466 36395466 C T TYROBP 3'UTR 0.23 TCGA-BR-7957-01 19 42597998 42597998 C A POU2F2 Missense_Mutation p.S394I 0.09 deleterious(0) benign(0.053) TCGA-BR-7957-01 19 46997652 46997652 G C PNMAL2 Missense_Mutation p.I357M 0.10 tolerated(0.26) benign(0.326) TCGA-BR-7957-01 19 53057818 53057818 G A ZNF808 Missense_Mutation p.R550H 0.10 tolerated(0.53) benign(0.218) TCGA-BR-7957-01 19 57175150 57175150 G T ZNF835 Missense_Mutation p.P473T 0.08 deleterious(0) probably_damaging(0.987) TCGA-BR-7957-01 19 58774032 58774032 C A ZNF544 Missense_Mutation p.P687H 0.10 deleterious(0) probably_damaging(0.999) TCGA-BR-7957-01 1 144922018 144922018 T C PDE4DIP Silent p.Q337Q 0.06 TCGA-BR-7957-01 1 150483405 150483405 G T ECM1 Missense_Mutation p.A174S 0.18 tolerated(0.19) benign(0.023) TCGA-BR-7957-01 1 207112623 207112623 T A PIGR Nonsense_Mutation p.K77* 0.08 TCGA-BR-7957-01 1 38339763 38339763 T C INPP5B Missense_Mutation p.Q618R 0.11 deleterious(0) possibly_damaging(0.792) TCGA-BR-7957-01 1 43907245 43907245 C T SZT2 Missense_Mutation p.R2471C 0.13 tolerated(0.22) benign(0.387) TCGA-BR-7957-01 1 43913551 43913551 C T SZT2 Nonsense_Mutation p.R3101* 0.07 TCGA-BR-7957-01 20 31678530 31678530 G A BPIFB4 Silent p.G356G 0.10 TCGA-BR-7957-01 21 31720889 31720891 GGA - KRTAP23-1 In_Frame_Del p.S12del 0.09 TCGA-BR-7957-01 21 42064772 42064772 C T DSCAM Missense_Mutation p.V158I 0.09 tolerated(0.15) possibly_damaging(0.545) TCGA-BR-7957-01 22 16287790 16287790 G A POTEH Silent p.F32F 0.24 TCGA-BR-7957-01 22 22764366 22764366 G C IGLV1-40 Missense_Mutation p.R36S 0.10 tolerated_low_confidence(0.17) benign(0.016) TCGA-BR-7957-01 22 24896190 24896190 G A UPB1 Missense_Mutation p.V74M 0.22 deleterious(0.01) possibly_damaging(0.609) TCGA-BR-7957-01 2 182322476 182322476 G A ITGA4 Missense_Mutation p.R32H 0.16 tolerated(0.6) benign(0) TCGA-BR-7957-01 2 207527632 207527632 G A DYTN Missense_Mutation p.P543L 0.09 deleterious(0.04) possibly_damaging(0.813) TCGA-BR-7957-01 2 218999511 218999511 A C CXCR2 5'UTR 0.17 TCGA-BR-7957-01 2 219290514 219290514 C G VIL1 Silent p.G109G 0.10 TCGA-BR-7957-01 2 32824836 32824836 T A BIRC6 Missense_Mutation p.Y4621N 0.14 probably_damaging(1) TCGA-BR-7957-01 2 86276114 86276114 G A POLR1A Nonsense_Mutation p.R843* 0.12 TCGA-BR-7957-01 3 155282805 155282805 G A PLCH1 Missense_Mutation p.A311V 0.11 deleterious(0) probably_damaging(1) TCGA-BR-7957-01 3 370003 370003 C T CHL1 Silent p.I117I 0.08 TCGA-BR-7957-01 4 57839516 57839516 C T NOA1 Missense_Mutation p.R438K 0.14 tolerated(0.07) possibly_damaging(0.773) TCGA-BR-7957-01 4 95539322 95539323 - GCA PDLIM5 In_Frame_Ins p.Q393dup 0.13 TCGA-BR-7957-01 6 159653822 159653822 C T FNDC1 Missense_Mutation p.R760W 0.07 deleterious_low_confidence(0) unknown(0) TCGA-BR-7957-01 6 56535574 56535574 T C DST Missense_Mutation p.E149G 0.29 probably_damaging(0.931) TCGA-BR-7957-01 7 110303717 110303717 G T IMMP2L Missense_Mutation p.Q157K 0.08 tolerated(0.19) benign(0.034) TCGA-BR-7957-01 7 37780620 37780620 C T GPR141 Nonsense_Mutation p.Q209* 0.07 TCGA-BR-7957-01 7 720223 720223 G A PRKAR1B Silent p.T106T 0.10 TCGA-BR-7957-01 8 130763792 130763792 C T GSDMC Nonsense_Mutation p.W313* 0.06 TCGA-BR-7957-01 9 121930162 121930162 C T BRINP1 Missense_Mutation p.D496N 0.10 deleterious(0) probably_damaging(0.956) TCGA-BR-7957-01 9 35107995 35107995 G T FAM214B Missense_Mutation p.P93T 0.11 tolerated_low_confidence(0.17) benign(0.193) TCGA-BR-7957-01 9 7174616 7174616 A T KDM4C Nonsense_Mutation p.R1020* 0.10 TCGA-BR-7957-01 X 107403018 107403018 G T COL4A6 Intron 0.08 TCGA-BR-7957-01 X 153051450 153051450 G A IDH3G Intron 0.08 TCGA-BR-7957-01 X 16870202 16870202 C T RBBP7 Missense_Mutation p.G380D 0.10 deleterious(0) probably_damaging(0.999) TCGA-BR-7957-01 X 21985429 21985429 C T SMS Silent p.N55N 0.09 TCGA-BR-7957-01 X 53280269 53280269 C G IQSEC2 Missense_Mutation p.E497Q 0.07 tolerated(0.15) possibly_damaging(0.681) TCGA-BR-7957-01 X 8591678 8591678 T C KAL1 Missense_Mutation p.R97G 0.16 tolerated(0.07) benign(0.014) TCGA-BR-7957-01 X 99662755 99662755 C T PCDH19 Missense_Mutation p.V281I 0.12 tolerated(0.49) benign(0.212) TCGA-BR-7958-01 10 25313384 25313384 G C THNSL1 Missense_Mutation p.G411A 0.22 deleterious(0.02) benign(0.262) TCGA-BR-7958-01 10 45799788 45799788 G A OR13A1 Missense_Mutation p.T28I 0.19 deleterious(0.04) benign(0.005) TCGA-BR-7958-01 10 58119894 58119894 C G ZWINT Missense_Mutation p.Q47H 0.27 deleterious(0.04) benign(0.371) TCGA-BR-7958-01 10 69682805 69682805 G A HERC4 Silent p.L1019L 0.21 TCGA-BR-7958-01 10 73559288 73559288 C G CDH23 Missense_Mutation p.L182V 0.19 tolerated(0.91) benign(0.444) TCGA-BR-7958-01 10 8115837 8115837 G A GATA3 Missense_Mutation p.A396T 0.19 tolerated(0.07) benign(0.023) TCGA-BR-7958-01 10 99969588 99969588 A T R3HCC1L Missense_Mutation p.I573F 0.21 deleterious(0) benign(0.004) TCGA-BR-7958-01 11 107663450 107663450 G A SLC35F2 Missense_Mutation p.T339M 0.11 tolerated(0.07) benign(0.075) TCGA-BR-7958-01 11 108043025 108043025 G T NPAT Missense_Mutation p.P896T 0.06 deleterious(0.04) benign(0.135) TCGA-BR-7958-01 11 118363776 118363776 C T KMT2A Missense_Mutation p.A1670V 0.19 probably_damaging(0.993) TCGA-BR-7958-01 11 1311591 1311591 G A TOLLIP Nonsense_Mutation p.R78* 0.23 TCGA-BR-7958-01 11 2950325 2950325 C A PHLDA2 Missense_Mutation p.W90C 0.16 deleterious(0) probably_damaging(1) TCGA-BR-7958-01 11 44331170 44331170 G A ALX4 Missense_Mutation p.A148V 0.14 tolerated_low_confidence(0.13) benign(0.001) TCGA-BR-7958-01 11 5624742 5624742 A C TRIM6 Missense_Mutation p.N95T 0.14 deleterious(0.01) possibly_damaging(0.665) TCGA-BR-7958-01 11 5905586 5905586 C A OR52E4 Missense_Mutation p.L22M 0.14 tolerated(0.11) possibly_damaging(0.873) TCGA-BR-7958-01 11 64622309 64622309 G A EHD1 Silent p.D367D 0.12 TCGA-BR-7958-01 11 67046685 67046685 C T ADRBK1 Nonsense_Mutation p.R69* 0.21 TCGA-BR-7958-01 11 73008598 73008598 C T P2RY6 3'UTR 0.22 TCGA-BR-7958-01 12 104106194 104106194 T A STAB2 Missense_Mutation p.F1462I 0.17 deleterious(0.03) benign(0.118) TCGA-BR-7958-01 12 129293454 129293454 C A SLC15A4 Silent p.L379L 0.13 TCGA-BR-7958-01 12 49220834 49220834 C T CACNB3 Silent p.Y356Y 0.20 TCGA-BR-7958-01 12 53689386 53689386 T G PFDN5 Missense_Mutation p.L12R 0.21 deleterious(0) probably_damaging(0.94) TCGA-BR-7958-01 12 54741794 54741794 G T COPZ1 Nonsense_Mutation p.E136* 0.20 TCGA-BR-7958-01 12 56415240 56415240 T A IKZF4 5'UTR 0.38 TCGA-BR-7958-01 12 6839863 6839863 T G COPS7A Missense_Mutation p.V222G 0.29 deleterious(0.03) benign(0.065) TCGA-BR-7958-01 12 97045414 97045414 C T C12orf55 Missense_Mutation p.R1641W 0.18 deleterious(0) probably_damaging(0.997) TCGA-BR-7958-01 13 19753576 19753576 C A TUBA3C Missense_Mutation p.G44V 0.18 tolerated_low_confidence(0.28) benign(0.297) TCGA-BR-7958-01 13 30096542 30096542 C A SLC7A1 Missense_Mutation p.E367D 0.05 tolerated(0.16) benign(0.06) TCGA-BR-7958-01 13 35756602 35756602 A G NBEA Missense_Mutation p.T1590A 0.09 tolerated(1) benign(0) TCGA-BR-7958-01 13 39265503 39265503 A C FREM2 Missense_Mutation p.Y1341S 0.29 deleterious(0) possibly_damaging(0.897) TCGA-BR-7958-01 13 43181028 43181028 G A TNFSF11 Missense_Mutation p.A310T 0.22 tolerated(0.05) probably_damaging(1) TCGA-BR-7958-01 13 50141342 50141342 C T RCBTB1 Missense_Mutation p.C25Y 0.16 deleterious(0.04) benign(0.004) TCGA-BR-7958-01 14 105414259 105414259 G A AHNAK2 Missense_Mutation p.A2510V 0.23 benign(0.024) TCGA-BR-7958-01 14 106110837 106110837 T A IGHG2 Silent p.T97T 0.16 TCGA-BR-7958-01 14 22294174 22294174 A G TRAV10 Missense_Mutation p.Q93R 0.29 tolerated(0.62) benign(0.003) TCGA-BR-7958-01 14 29237469 29237469 C T FOXG1 Silent p.N328N 0.19 TCGA-BR-7958-01 14 51237170 51237170 T C NIN Missense_Mutation p.Q457R 0.19 tolerated(0.23) probably_damaging(0.998) TCGA-BR-7958-01 14 54418777 54418777 C T BMP4 Missense_Mutation p.R55Q 0.27 tolerated(0.21) benign(0.153) TCGA-BR-7958-01 14 56079048 56079048 T C KTN1 Silent p.D94D 0.21 TCGA-BR-7958-01 14 64486739 64486740 TT - SYNE2 Frame_Shift_Del p.S1694Rfs*4 0.24 TCGA-BR-7958-01 14 74036520 74036520 C T ACOT2 Silent p.L192L 0.21 TCGA-BR-7958-01 14 94423374 94423374 G A ASB2 Intron 0.35 TCGA-BR-7958-01 15 22382738 22382738 A C OR4N4 Missense_Mutation p.K89T 0.11 tolerated(0.21) possibly_damaging(0.786) TCGA-BR-7958-01 15 23006656 23006656 G T NIPA2 Silent p.P216P 0.20 TCGA-BR-7958-01 15 40864085 40864085 G A RPUSD2 Missense_Mutation p.V297I 0.09 tolerated(0.61) possibly_damaging(0.447) TCGA-BR-7958-01 15 41870130 41870130 C G TYRO3 Missense_Mutation p.P777A 0.22 deleterious(0) probably_damaging(1) TCGA-BR-7958-01 15 67473722 67473722 C T SMAD3 Missense_Mutation p.R268C 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-BR-7958-01 15 76494574 76494600 CATCAGTCAGTATTACAATGGGCCCAG - C15orf27 In_Frame_Del p.I331_S339del 0.34 TCGA-BR-7958-01 16 112539 112539 A C RHBDF1 Missense_Mutation p.M317R 0.06 tolerated(0.07) benign(0.224) TCGA-BR-7958-01 16 1144784 1144784 G A C1QTNF8 Silent p.L47L 0.18 TCGA-BR-7958-01 16 15835704 15835704 C G MYH11 Missense_Mutation p.Q862H 0.21 benign(0.097) TCGA-BR-7958-01 16 30750475 30750475 G C SRCAP Missense_Mutation p.L3038F 0.25 unknown(0) TCGA-BR-7958-01 16 31091735 31091735 G C ZNF646 Missense_Mutation p.V1364L 0.20 tolerated_low_confidence(0.07) probably_damaging(0.978) TCGA-BR-7958-01 16 4924871 4924871 A G UBN1 Silent p.P820P 0.18 TCGA-BR-7958-01 16 67859121 67859121 G C TSNAXIP1 Missense_Mutation p.D200H 0.16 deleterious(0.01) probably_damaging(0.98) TCGA-BR-7958-01 16 71823368 71823368 G A AP1G1 Silent p.I5I 0.20 TCGA-BR-7958-01 16 90001646 90001646 C G TUBB3 Missense_Mutation p.L263V 0.16 deleterious_low_confidence(0.01) probably_damaging(0.929) TCGA-BR-7958-01 17 1650662 1650662 G A SERPINF2 Missense_Mutation p.V191M 0.29 tolerated(0.61) benign(0.029) TCGA-BR-7958-01 17 3324390 3324390 T G OR3A3 Missense_Mutation p.F177V 0.16 deleterious(0) probably_damaging(0.994) TCGA-BR-7958-01 17 39323897 39323897 C T KRTAP4-3 Silent p.P176P 0.17 TCGA-BR-7958-01 17 41959741 41959741 G A MPP2 Missense_Mutation p.R198C 0.25 deleterious(0.05) probably_damaging(0.94) TCGA-BR-7958-01 17 60758196 60758196 T A MRC2 Missense_Mutation p.Y837N 0.28 deleterious(0) probably_damaging(0.999) TCGA-BR-7958-01 17 71391442 71391442 C T SDK2 Silent p.L1148L 0.19 TCGA-BR-7958-01 17 74382950 74382950 G A SPHK1 Silent p.L232L 0.20 TCGA-BR-7958-01 17 7481767 7481767 T C EIF4A1 Missense_Mutation p.I395T 0.24 deleterious(0) possibly_damaging(0.642) TCGA-BR-7958-01 17 78449909 78449909 G A NPTX1 Missense_Mutation p.S113L 0.27 tolerated(0.37) benign(0.017) TCGA-BR-7958-01 18 24496429 24496429 C A CHST9 Missense_Mutation p.D376Y 0.25 deleterious(0) probably_damaging(1) TCGA-BR-7958-01 18 2945851 2945851 T C LPIN2 Intron 0.12 TCGA-BR-7958-01 18 34297852 34297852 T C FHOD3 Missense_Mutation p.L689P 0.15 deleterious(0.04) probably_damaging(0.998) TCGA-BR-7958-01 18 48591940 48591940 C G SMAD4 Missense_Mutation p.S368C 0.27 deleterious(0.02) possibly_damaging(0.77) TCGA-BR-7958-01 18 6882152 6882152 T C ARHGAP28 Missense_Mutation p.L277P 0.22 deleterious(0) probably_damaging(0.997) TCGA-BR-7958-01 18 9530858 9530858 G A RALBP1 Silent p.E458E 0.11 TCGA-BR-7958-01 19 13885275 13885275 C T C19orf53 5'UTR 0.17 TCGA-BR-7958-01 19 13991414 13991414 C A NANOS3 3'Flank 0.47 TCGA-BR-7958-01 19 15529781 15529781 G T AKAP8L 5'UTR 0.09 TCGA-BR-7958-01 19 15770235 15770235 C A CYP4F3 3'UTR 0.29 TCGA-BR-7958-01 19 17298761 17298761 C T MYO9B Silent p.D865D 0.33 TCGA-BR-7958-01 19 18123786 18123786 G T ARRDC2 3'UTR 0.14 TCGA-BR-7958-01 19 4054833 4054833 G A ZBTB7A Missense_Mutation p.A133V 0.27 deleterious(0.01) possibly_damaging(0.787) TCGA-BR-7958-01 19 42355654 42355654 C G DMRTC2 Missense_Mutation p.P332A 0.44 tolerated(0.12) benign(0.015) TCGA-BR-7958-01 19 48220033 48220033 T G EHD2 Missense_Mutation p.F55C 0.43 deleterious(0) probably_damaging(0.991) TCGA-BR-7958-01 19 49303355 49303355 A T BCAT2 Missense_Mutation p.S138R 0.07 tolerated(0.33) benign(0.019) TCGA-BR-7958-01 19 50191446 50191446 G C PRMT1 Missense_Mutation p.D354H 0.41 tolerated(0.08) benign(0.055) TCGA-BR-7958-01 19 51021627 51021627 G A LRRC4B Missense_Mutation p.S448L 0.41 deleterious(0) possibly_damaging(0.598) TCGA-BR-7958-01 19 54304558 54304558 C T NLRP12 Silent p.L893L 0.32 TCGA-BR-7958-01 19 8668647 8668647 C T ADAMTS10 Missense_Mutation p.R186H 0.21 tolerated(0.17) benign(0.016) TCGA-BR-7958-01 19 9048395 9048395 G A MUC16 Missense_Mutation p.A11079V 0.22 benign(0.008) TCGA-BR-7958-01 1 100613741 100613741 G A TRMT13 Nonsense_Mutation p.W370* 0.30 TCGA-BR-7958-01 1 109275933 109275933 G A FNDC7 Missense_Mutation p.G640D 0.20 tolerated(0.32) benign(0.035) TCGA-BR-7958-01 1 11073960 11073960 G A TARDBP Missense_Mutation p.G59E 0.23 tolerated(0.06) benign(0.222) TCGA-BR-7958-01 1 112329676 112329676 A G KCND3 Missense_Mutation p.C387R 0.24 deleterious(0) possibly_damaging(0.712) TCGA-BR-7958-01 1 115218621 115218621 A C AMPD1 Missense_Mutation p.D497E 0.21 deleterious(0.02) probably_damaging(0.999) TCGA-BR-7958-01 1 12837238 12837238 G A PRAMEF12 Silent p.P316P 0.25 TCGA-BR-7958-01 1 152323428 152323428 T G FLG2 Missense_Mutation p.Q2278H 0.18 benign(0.221) TCGA-BR-7958-01 1 193029049 193029049 C T UCHL5 5'Flank 0.14 TCGA-BR-7958-01 1 196927133 196927146 GTATCAACTTGAGG - CFHR2 Frame_Shift_Del p.Y182* 0.12 TCGA-BR-7958-01 1 216680423 216680423 C T ESRRG Missense_Mutation p.R424H 0.18 tolerated(0.24) probably_damaging(0.962) TCGA-BR-7958-01 1 224588663 224588663 A C WDR26 Missense_Mutation p.F470V 0.19 deleterious(0.02) benign(0.059) TCGA-BR-7958-01 1 235916455 235916455 A C LYST Missense_Mutation p.L2450R 0.18 deleterious(0) probably_damaging(0.998) TCGA-BR-7958-01 1 242383296 242383296 C T PLD5 Silent p.L243L 0.11 TCGA-BR-7958-01 1 36645909 36645909 C T MAP7D1 3'UTR 0.20 TCGA-BR-7958-01 1 39801200 39801200 G A MACF1 Intron 0.17 TCGA-BR-7958-01 1 46083181 46083181 C T NASP Missense_Mutation p.A735V 0.23 tolerated(0.09) benign(0.41) TCGA-BR-7958-01 1 67666558 67666558 G T IL23R Silent p.L210L 0.15 TCGA-BR-7958-01 1 908657 908657 G A PLEKHN1 Missense_Mutation p.R415Q 0.42 tolerated(0.49) benign(0.024) TCGA-BR-7958-01 1 93073222 93073222 T G EVI5 Missense_Mutation p.K614N 0.32 tolerated(0.12) benign(0.079) TCGA-BR-7958-01 20 37056007 37056007 C A SNORA71A RNA 0.22 TCGA-BR-7958-01 20 44469462 44469462 G A SNX21 Missense_Mutation p.R211H 0.21 deleterious(0) benign(0.222) TCGA-BR-7958-01 20 55027211 55027211 G A CASS4 Missense_Mutation p.V327I 0.11 tolerated(0.26) benign(0.002) TCGA-BR-7958-01 20 57273760 57273760 C T NPEPL1 Silent p.D176D 0.15 TCGA-BR-7958-01 20 57429490 57429490 C T GNAS Silent p.T390T 0.25 TCGA-BR-7958-01 20 62250828 62250828 C T GMEB2 5'UTR 0.12 TCGA-BR-7958-01 21 45993856 45993856 C G KRTAP10-4 Missense_Mutation p.P74R 0.18 deleterious(0) unknown(0) TCGA-BR-7958-01 22 23265026 23265026 C T IGLC7 Missense_Mutation p.R88W 0.17 deleterious_low_confidence(0) benign(0.426) TCGA-BR-7958-01 22 37334402 37334402 T C CSF2RB Missense_Mutation p.L851P 0.25 tolerated(0.33) benign(0.015) TCGA-BR-7958-01 22 42264622 42264622 G A SREBF2 Silent p.Q182Q 0.21 TCGA-BR-7958-01 22 50659280 50659280 T C TUBGCP6 Missense_Mutation p.S1170G 0.25 tolerated(0.27) unknown(0) TCGA-BR-7958-01 2 128388868 128388868 G A MYO7B Silent p.L1649L 0.32 TCGA-BR-7958-01 2 141533778 141533778 A C LRP1B Missense_Mutation p.L1797V 0.13 benign(0.364) TCGA-BR-7958-01 2 141598583 141598583 G A LRP1B Missense_Mutation p.T1673M 0.16 possibly_damaging(0.791) TCGA-BR-7958-01 2 143798029 143798030 - A KYNU Frame_Shift_Ins p.S361Ifs*15 0.10 TCGA-BR-7958-01 2 160602345 160602345 A C MARCH7 Silent p.T137T 0.15 TCGA-BR-7958-01 2 166019183 166019183 C T SCN3A Missense_Mutation p.D284N 0.17 tolerated(1) benign(0.001) TCGA-BR-7958-01 2 179433673 179433673 T G TTN Missense_Mutation p.K25729T 0.13 TCGA-BR-7958-01 2 179437148 179437148 T G TTN Missense_Mutation p.T24571P 0.16 TCGA-BR-7958-01 2 179457585 179457585 T G TTN Missense_Mutation p.K19754T 0.16 TCGA-BR-7958-01 2 204292104 204292104 G A ABI2 3'UTR 0.20 TCGA-BR-7958-01 2 209217375 209217375 T C PIKFYVE Intron 0.44 TCGA-BR-7958-01 2 210560638 210560638 G T MAP2 Silent p.L1248L 0.23 TCGA-BR-7958-01 2 212488720 212488720 A C ERBB4 Missense_Mutation p.L710R 0.23 deleterious(0) probably_damaging(0.995) TCGA-BR-7958-01 2 220075736 220075736 C T ABCB6 Missense_Mutation p.R688H 0.25 deleterious(0) benign(0.016) TCGA-BR-7958-01 2 220397112 220397112 T G ASIC4 Missense_Mutation p.S438A 0.19 tolerated(0.29) benign(0.023) TCGA-BR-7958-01 2 32673903 32673903 G A BIRC6 Missense_Mutation p.D1509N 0.19 possibly_damaging(0.69) TCGA-BR-7958-01 2 48915121 48915121 T G LHCGR Missense_Mutation p.K605N 0.20 deleterious(0) probably_damaging(0.999) TCGA-BR-7958-01 2 73453032 73453032 G T SMYD5 Missense_Mutation p.E405D 0.24 tolerated_low_confidence(0.32) unknown(0) TCGA-BR-7958-01 2 74907203 74907203 C T SEMA4F Missense_Mutation p.P727L 0.09 tolerated(0.11) probably_damaging(0.999) TCGA-BR-7958-01 2 88826000 88826000 G A TEX37 Silent p.R35R 0.19 TCGA-BR-7958-01 2 99901213 99901213 G C LYG1 Missense_Mutation p.T135S 0.27 tolerated(0.22) benign(0.318) TCGA-BR-7958-01 3 112969655 112969655 C T BOC Silent p.S117S 0.18 TCGA-BR-7958-01 3 114069258 114069258 G A ZBTB20 Missense_Mutation p.A556V 0.15 tolerated(0.77) benign(0.143) TCGA-BR-7958-01 3 119217450 119217450 C A TIMMDC1 5'UTR 0.27 TCGA-BR-7958-01 3 125850299 125850312 CAGCGTGTAGACGG - ALDH1L1 Frame_Shift_Del p.A523Gfs*21 0.19 TCGA-BR-7958-01 3 129810113 129810113 C T RP11-93K22.13 Intron 0.08 TCGA-BR-7958-01 3 150690403 150690403 C T CLRN1 Silent p.P31P 0.22 TCGA-BR-7958-01 3 189675736 189675736 G C LEPREL1 Missense_Mutation p.H698D 0.09 tolerated(0.62) benign(0.001) TCGA-BR-7958-01 3 23960861 23960861 C T RPL15 Missense_Mutation p.R162C 0.32 deleterious(0.02) benign(0.003) TCGA-BR-7958-01 3 38138170 38138170 A T DLEC1 Missense_Mutation p.Y761F 0.14 deleterious(0) probably_damaging(0.956) TCGA-BR-7958-01 3 47282462 47282462 T C KIF9 Missense_Mutation p.K585E 0.16 deleterious(0) probably_damaging(0.999) TCGA-BR-7958-01 3 49757993 49757993 C T RNF123 Missense_Mutation p.R1184C 0.20 tolerated(0.06) benign(0.003) TCGA-BR-7958-01 3 53898872 53898872 G C IL17RB Missense_Mutation p.C349S 0.23 deleterious(0.01) possibly_damaging(0.782) TCGA-BR-7958-01 4 102004362 102004362 G A PPP3CA Missense_Mutation p.H281Y 0.23 deleterious(0) probably_damaging(0.969) TCGA-BR-7958-01 4 121957812 121957812 C G NDNF Missense_Mutation p.R438S 0.10 deleterious(0.04) benign(0.114) TCGA-BR-7958-01 4 166218834 166218834 A T KLHL2 Missense_Mutation p.E247V 0.18 deleterious(0) possibly_damaging(0.889) TCGA-BR-7958-01 4 186380716 186380716 T G CCDC110 Missense_Mutation p.K342T 0.18 deleterious(0.02) possibly_damaging(0.786) TCGA-BR-7958-01 4 247449 247449 G A ZNF876P RNA 0.24 TCGA-BR-7958-01 4 42895566 42895566 A G GRXCR1 Missense_Mutation p.R95G 0.18 tolerated(0.09) benign(0.11) TCGA-BR-7958-01 4 71522133 71522133 G T IGJ Nonsense_Mutation p.C131* 0.17 TCGA-BR-7958-01 4 87808972 87808972 T C C4orf36 Missense_Mutation p.I99V 0.18 tolerated(0.42) benign(0) TCGA-BR-7958-01 4 96075778 96075778 A G BMPR1B Missense_Mutation p.K518R 0.24 deleterious(0.01) benign(0.115) TCGA-BR-7958-01 5 140594608 140594608 A C PCDHB13 Missense_Mutation p.K305Q 0.30 tolerated_low_confidence(0.1) benign(0.014) TCGA-BR-7958-01 5 179290573 179290573 C T TBC1D9B Missense_Mutation p.E1210K 0.20 deleterious(0) probably_damaging(0.999) TCGA-BR-7958-01 5 179548126 179548126 G C RASGEF1C Missense_Mutation p.S246R 0.30 tolerated(0.8) benign(0.003) TCGA-BR-7958-01 5 26903894 26903894 C A CDH9 Missense_Mutation p.G284V 0.24 deleterious(0) possibly_damaging(0.78) TCGA-BR-7958-01 5 37816105 37816105 G C GDNF Missense_Mutation p.A112G 0.25 tolerated(0.44) benign(0.004) TCGA-BR-7958-01 5 44809568 44809568 G A MRPS30 Silent p.E168E 0.22 TCGA-BR-7958-01 5 94728571 94728571 T G FAM81B Silent p.L66L 0.13 TCGA-BR-7958-01 6 102372513 102372513 A C GRIK2 Missense_Mutation p.N596H 0.21 tolerated(0.1) probably_damaging(0.995) TCGA-BR-7958-01 6 117127751 117127751 T A GPRC6A Missense_Mutation p.S373C 0.23 tolerated(0.08) benign(0.159) TCGA-BR-7958-01 6 125232053 125232053 A T RP11-510H23.1 RNA 0.23 TCGA-BR-7958-01 6 139097404 139097404 A G CCDC28A Silent p.P139P 0.17 TCGA-BR-7958-01 6 142409567 142409567 C T NMBR Missense_Mutation p.V77I 0.31 tolerated(0.08) possibly_damaging(0.749) TCGA-BR-7958-01 6 145114972 145114972 C T UTRN Missense_Mutation p.L2975F 0.33 deleterious(0) probably_damaging(0.995) TCGA-BR-7958-01 6 150290350 150290350 C T ULBP1 Missense_Mutation p.A160V 0.21 tolerated(1) benign(0.002) TCGA-BR-7958-01 6 159692384 159692384 G T FNDC1 Missense_Mutation p.E1865D 0.29 deleterious(0) probably_damaging(0.989) TCGA-BR-7958-01 6 31731858 31731858 A C SAPCD1 Missense_Mutation p.L91F 0.49 tolerated(0.11) benign(0.021) TCGA-BR-7958-01 6 3226001 3226001 C G TUBB2B Missense_Mutation p.E108Q 0.34 deleterious_low_confidence(0) probably_damaging(0.941) TCGA-BR-7958-01 6 40360102 40360102 C T LRFN2 Silent p.K650K 0.24 TCGA-BR-7958-01 6 51609229 51609229 T C PKHD1 Silent p.V3370V 0.23 TCGA-BR-7958-01 6 80750377 80750377 T G TTK Missense_Mutation p.L816R 0.22 deleterious(0) probably_damaging(0.998) TCGA-BR-7958-01 7 107435028 107435028 G T SLC26A3 5'UTR 0.26 TCGA-BR-7958-01 7 116339156 116339156 G T MET Silent p.V6V 0.10 TCGA-BR-7958-01 7 129841736 129841736 G A TMEM209 Missense_Mutation p.S176F 0.14 tolerated(0.05) possibly_damaging(0.883) TCGA-BR-7958-01 7 132192789 132192789 A C PLXNA4 Missense_Mutation p.F222V 0.34 deleterious(0.02) probably_damaging(0.998) TCGA-BR-7958-01 7 144098486 144098486 G T NOBOX Missense_Mutation p.A166D 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.601) TCGA-BR-7958-01 7 150773532 150773532 T A SLC4A2 3'UTR 0.16 TCGA-BR-7958-01 7 20438596 20438596 A G ITGB8 Silent p.R420R 0.20 TCGA-BR-7958-01 7 37172752 37172752 G T ELMO1 Missense_Mutation p.Q392K 0.37 tolerated(0.12) possibly_damaging(0.566) TCGA-BR-7958-01 7 62752525 62752525 C G ZNF733P RNA 0.10 TCGA-BR-7958-01 7 66764300 66764301 GT C Y_RNA 5'Flank 0.11 TCGA-BR-7958-01 7 77326150 77326150 C T RSBN1L Nonsense_Mutation p.Q122* 0.27 TCGA-BR-7958-01 7 86570669 86570669 T A KIAA1324L Intron 0.14 TCGA-BR-7958-01 7 95813719 95813719 G A SLC25A13 Silent p.I350I 0.29 TCGA-BR-7958-01 8 104427493 104427493 C G DCAF13 Missense_Mutation p.A92G 0.21 deleterious_low_confidence(0) possibly_damaging(0.866) TCGA-BR-7958-01 8 113650972 113650972 A C CSMD3 Missense_Mutation p.I1160S 0.11 tolerated(0.07) probably_damaging(0.962) TCGA-BR-7958-01 8 121216104 121216104 T G COL14A1 Missense_Mutation p.I345S 0.40 deleterious(0) benign(0.379) TCGA-BR-7958-01 8 124664818 124664818 G A KLHL38 Missense_Mutation p.P117S 0.16 tolerated(0.88) benign(0.056) TCGA-BR-7958-01 8 145736098 145736098 C G MFSD3 Missense_Mutation p.I316M 0.21 tolerated(0.22) benign(0.02) TCGA-BR-7958-01 8 145746973 145746973 C T LRRC14 3'UTR 0.42 TCGA-BR-7958-01 8 24813352 24813352 C G CTD-2168K21.2 5'Flank 0.20 TCGA-BR-7958-01 8 2807833 2807833 G T CSMD1 Missense_Mutation p.L3412M 0.26 probably_damaging(0.998) TCGA-BR-7958-01 8 37704431 37704431 G T BRF2 Silent p.L159L 0.24 TCGA-BR-7958-01 8 70674086 70674086 A C SLCO5A1 Missense_Mutation p.L311R 0.24 deleterious(0.02) possibly_damaging(0.534) TCGA-BR-7958-01 8 75944587 75944587 A G CRISPLD1 3'UTR 0.36 TCGA-BR-7958-01 8 89058908 89058908 T G MMP16 Missense_Mutation p.H493P 0.15 deleterious(0.01) benign(0.26) TCGA-BR-7958-01 9 103278979 103278979 A G TMEFF1 Silent p.E162E 0.11 TCGA-BR-7958-01 9 136319694 136319694 C T ADAMTS13 Missense_Mutation p.L1068F 0.33 tolerated(0.4) benign(0.008) TCGA-BR-7958-01 9 138671281 138671281 G A KCNT1 Missense_Mutation p.D936N 0.25 tolerated(0.18) benign(0.088) TCGA-BR-7958-01 9 21206707 21206707 T G IFNA10 Missense_Mutation p.E130D 0.21 deleterious(0.03) possibly_damaging(0.73) TCGA-BR-7958-01 9 84562837 84562837 C T RP11-383M4.6 Intron 0.12 TCGA-BR-7958-01 X 106110048 106110048 T C TBC1D8B Missense_Mutation p.F895S 0.38 deleterious(0.04) benign(0.186) TCGA-BR-7958-01 X 111155847 111155847 C T TRPC5 Missense_Mutation p.R191H 0.35 deleterious(0) probably_damaging(1) TCGA-BR-7958-01 X 32867866 32867866 T A DMD Missense_Mutation p.E55D 0.44 benign(0.399) TCGA-BR-7958-01 X 70823607 70823607 C T ACRC Silent p.D160D 0.08 TCGA-BR-7958-01 X 77913793 77913793 T G ZCCHC5 Missense_Mutation p.K42T 0.67 deleterious_low_confidence(0.02) possibly_damaging(0.462) TCGA-BR-7959-01 10 101978784 101978784 G C CHUK Missense_Mutation p.H224D 0.06 deleterious(0.04) benign(0.446) TCGA-BR-7959-01 10 104119979 104119979 G A GBF1 Missense_Mutation p.E406K 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-BR-7959-01 10 11060043 11060043 G A CELF2 5'UTR 0.39 TCGA-BR-7959-01 10 124794014 124794014 T C ACADSB Missense_Mutation p.M62T 0.17 tolerated(0.57) benign(0.001) TCGA-BR-7959-01 10 73437319 73437319 G A CDH23 Missense_Mutation p.E133K 0.53 tolerated(0.16) benign(0.439) TCGA-BR-7959-01 11 104872902 104872902 G C CASP5 Missense_Mutation p.D203E 0.13 tolerated(0.4) benign(0.039) TCGA-BR-7959-01 11 107675446 107675446 A T SLC35F2 Missense_Mutation p.I261N 0.35 deleterious(0) possibly_damaging(0.739) TCGA-BR-7959-01 11 10795681 10795681 G A CTR9 Silent p.E950E 0.11 TCGA-BR-7959-01 11 119183094 119183094 G A MCAM Silent p.N302N 0.37 TCGA-BR-7959-01 11 14810696 14810696 C G PDE3B Missense_Mutation p.S441R 0.11 deleterious(0) possibly_damaging(0.836) TCGA-BR-7959-01 11 6651061 6651061 G C DCHS1 Missense_Mutation p.S1626C 0.17 tolerated(0.19) probably_damaging(0.957) TCGA-BR-7959-01 11 77632475 77632475 G C INTS4 Missense_Mutation p.P559A 0.16 deleterious(0.03) possibly_damaging(0.887) TCGA-BR-7959-01 11 78380749 78380749 C T TENM4 Missense_Mutation p.R2214H 0.15 deleterious(0) probably_damaging(0.985) TCGA-BR-7959-01 11 85593611 85593611 T C CCDC83 Missense_Mutation p.L79P 0.11 deleterious(0) probably_damaging(0.998) TCGA-BR-7959-01 11 89774338 89774338 A C TRIM49C Missense_Mutation p.S327R 0.17 tolerated(0.19) benign(0.01) TCGA-BR-7959-01 12 11545916 11545916 G A PRB2 Missense_Mutation p.P366S 0.05 tolerated_low_confidence(0.15) unknown(0) TCGA-BR-7959-01 12 129569152 129569152 G T TMEM132D Missense_Mutation p.S513R 0.15 deleterious(0) benign(0.06) TCGA-BR-7959-01 12 14589055 14589055 G A ATF7IP Missense_Mutation p.R554Q 0.13 deleterious_low_confidence(0) benign(0.417) TCGA-BR-7959-01 12 14614026 14614026 C A ATF7IP Nonsense_Mutation p.S919* 0.48 TCGA-BR-7959-01 12 44161981 44161981 T A IRAK4 Missense_Mutation p.S23T 0.12 tolerated(0.13) benign(0.297) TCGA-BR-7959-01 12 48387591 48387591 C T COL2A1 Splice_Site p.X308_splice 0.48 TCGA-BR-7959-01 12 49982234 49982234 T - FAM186B Intron 0.09 TCGA-BR-7959-01 12 56082736 56082736 G A ITGA7 Silent p.C954C 0.11 TCGA-BR-7959-01 12 78574822 78574822 T A NAV3 Missense_Mutation p.S1875T 0.50 tolerated(0.49) benign(0.236) TCGA-BR-7959-01 12 96367890 96367890 A G HAL 3'UTR 0.28 TCGA-BR-7959-01 13 109379795 109379795 G A MYO16 Missense_Mutation p.R102Q 0.24 deleterious(0) probably_damaging(1) TCGA-BR-7959-01 13 29933476 29933476 C T MTUS2 Missense_Mutation p.R1005W 0.21 deleterious(0) possibly_damaging(0.85) TCGA-BR-7959-01 13 46717504 46717504 T C LCP1 Missense_Mutation p.Y430C 0.36 deleterious(0.01) probably_damaging(0.986) TCGA-BR-7959-01 13 93518739 93518739 C G GPC5 3'UTR 0.16 TCGA-BR-7959-01 14 20249366 20249366 A C OR4M1 Missense_Mutation p.E295D 0.13 tolerated(0.17) probably_damaging(0.948) TCGA-BR-7959-01 14 20249373 20249373 G A OR4M1 Missense_Mutation p.A298T 0.13 tolerated(0.4) benign(0) TCGA-BR-7959-01 14 92915526 92915526 C T SLC24A4 Silent p.S282S 0.34 TCGA-BR-7959-01 16 18809256 18809256 G C ARL6IP1 Missense_Mutation p.S94C 0.08 deleterious(0.02) possibly_damaging(0.87) TCGA-BR-7959-01 16 18809334 18809334 G C ARL6IP1 Missense_Mutation p.S68C 0.07 deleterious(0) possibly_damaging(0.815) TCGA-BR-7959-01 16 18809360 18809360 G C ARL6IP1 Missense_Mutation p.I59M 0.09 deleterious(0.01) possibly_damaging(0.678) TCGA-BR-7959-01 16 18810035 18810035 G C ARL6IP1 Missense_Mutation p.S53C 0.15 deleterious(0) probably_damaging(0.979) TCGA-BR-7959-01 16 49670955 49670955 G A ZNF423 Missense_Mutation p.S703L 0.44 deleterious(0.01) possibly_damaging(0.459) TCGA-BR-7959-01 16 70902554 70902554 G A HYDIN Silent p.P3743P 0.45 TCGA-BR-7959-01 17 39134527 39134527 C G KRT40 Silent p.S406S 0.41 TCGA-BR-7959-01 17 74003289 74003289 G A EVPL Silent p.R1999R 0.45 TCGA-BR-7959-01 17 78176314 78176319 GAGGGT - CARD14 Intron 0.33 TCGA-BR-7959-01 17 78350178 78350178 G A RNF213 Silent p.S4421S 0.36 TCGA-BR-7959-01 17 7846798 7846798 G A CNTROB Silent p.Q467Q 0.24 TCGA-BR-7959-01 17 9694507 9694507 T G DHRS7C Missense_Mutation p.K32T 0.34 deleterious(0.02) benign(0.014) TCGA-BR-7959-01 19 12774255 12774255 T C MAN2B1 Missense_Mutation p.N262S 0.29 tolerated(0.38) benign(0.003) TCGA-BR-7959-01 19 17412071 17412071 C T ABHD8 Missense_Mutation p.V119M 0.09 tolerated(0.08) benign(0.073) TCGA-BR-7959-01 19 23542674 23542674 T G ZNF91 Missense_Mutation p.K1036T 0.21 tolerated(0.76) benign(0.048) TCGA-BR-7959-01 19 30101381 30101381 G A POP4 Missense_Mutation p.M42I 0.27 tolerated(0.48) benign(0.001) TCGA-BR-7959-01 19 37118304 37118304 G C ZNF382 Missense_Mutation p.S502T 0.22 tolerated(0.3) probably_damaging(0.949) TCGA-BR-7959-01 19 40581166 40581166 C T ZNF780A Missense_Mutation p.G396R 0.08 deleterious(0.02) probably_damaging(1) TCGA-BR-7959-01 19 50491462 50491462 G A VRK3 Intron 0.39 TCGA-BR-7959-01 19 54394999 54394999 A T PRKCG Missense_Mutation p.I201F 0.21 deleterious(0.03) benign(0.051) TCGA-BR-7959-01 19 5686455 5686455 C T HSD11B1L Missense_Mutation p.A78V 0.31 deleterious(0) probably_damaging(0.993) TCGA-BR-7959-01 19 5749138 5749138 C T CATSPERD Missense_Mutation p.R311W 0.32 deleterious(0.03) probably_damaging(0.96) TCGA-BR-7959-01 19 58132516 58132516 G A ZNF134 Silent p.P343P 0.12 TCGA-BR-7959-01 19 7977200 7977200 C T MAP2K7 Missense_Mutation p.R382C 0.33 deleterious(0.01) possibly_damaging(0.772) TCGA-BR-7959-01 19 8618058 8618058 C T MYO1F Missense_Mutation p.A157T 0.29 deleterious(0) probably_damaging(0.996) TCGA-BR-7959-01 19 9086511 9086511 A C MUC16 Missense_Mutation p.F1768L 0.25 unknown(0) TCGA-BR-7959-01 1 154233469 154233469 C T UBAP2L Nonsense_Mutation p.Q894* 0.31 TCGA-BR-7959-01 1 198247156 198247156 C T NEK7 Silent p.C146C 0.31 TCGA-BR-7959-01 1 203274817 203274817 G A BTG2 Missense_Mutation p.G28D 0.29 deleterious(0.01) possibly_damaging(0.81) TCGA-BR-7959-01 1 247835548 247835548 C T OR13G1 Missense_Mutation p.E266K 0.36 tolerated(0.09) benign(0.007) TCGA-BR-7959-01 1 36939177 36939177 C T CSF3R Missense_Mutation p.V178M 0.44 tolerated(0.08) benign(0.164) TCGA-BR-7959-01 20 13899664 13899664 T G SEL1L2 Intron 0.42 TCGA-BR-7959-01 20 19677542 19677542 T C SLC24A3 Silent p.I531I 0.53 TCGA-BR-7959-01 20 2312665 2312665 C T TGM3 Nonsense_Mutation p.Q451* 0.46 TCGA-BR-7959-01 20 2464884 2464884 G A ZNF343 Silent p.I241I 0.50 TCGA-BR-7959-01 20 30193528 30193528 C T ID1 Missense_Mutation p.S113F 0.19 deleterious(0) benign(0.365) TCGA-BR-7959-01 20 47587742 47587742 G A ARFGEF2 Missense_Mutation p.E426K 0.31 deleterious(0.04) benign(0.053) TCGA-BR-7959-01 20 49626833 49626833 C T KCNG1 Missense_Mutation p.A15T 0.42 tolerated_low_confidence(0.46) benign(0.181) TCGA-BR-7959-01 21 22906924 22906924 A C NCAM2 Missense_Mutation p.E783D 0.18 tolerated(0.27) benign(0.007) TCGA-BR-7959-01 21 43531396 43531396 C T UMODL1 Silent p.P688P 0.17 TCGA-BR-7959-01 22 22313018 22313018 C T TOP3B Silent p.T651T 0.18 TCGA-BR-7959-01 22 33402709 33402709 A T SYN3 5'UTR 0.16 TCGA-BR-7959-01 22 37771510 37771510 G C ELFN2 Missense_Mutation p.A22G 0.31 tolerated(1) benign(0.004) TCGA-BR-7959-01 22 47022672 47022672 G A GRAMD4 5'UTR 0.25 TCGA-BR-7959-01 2 137852589 137852589 G A THSD7B Missense_Mutation p.R366Q 0.16 deleterious(0) probably_damaging(0.964) TCGA-BR-7959-01 2 141607766 141607766 G A LRP1B Missense_Mutation p.A1615V 0.23 possibly_damaging(0.483) TCGA-BR-7959-01 2 166172057 166172057 C T SCN2A Missense_Mutation p.S487F 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-BR-7959-01 2 170598014 170598014 G A KLHL23 Missense_Mutation p.E445K 0.36 tolerated(0.2) possibly_damaging(0.711) TCGA-BR-7959-01 2 197657761 197657761 T C GTF3C3 Silent p.E110E 0.31 TCGA-BR-7959-01 2 213403321 213403321 C T ERBB4 5'UTR 0.09 TCGA-BR-7959-01 2 220432115 220432115 C T OBSL1 Missense_Mutation p.G573R 0.11 deleterious(0) probably_damaging(0.986) TCGA-BR-7959-01 2 233712181 233712181 G A GIGYF2 Missense_Mutation p.R1216H 0.27 unknown(0) TCGA-BR-7959-01 2 27830727 27830727 G A ZNF512 Missense_Mutation p.E318K 0.17 tolerated(0.07) benign(0.011) TCGA-BR-7959-01 2 42994786 42994786 C T HAAO Missense_Mutation p.R244Q 0.33 tolerated(1) benign(0) TCGA-BR-7959-01 2 48025928 48025928 C G MSH6 Missense_Mutation p.T269S 0.10 tolerated(0.75) benign(0.002) TCGA-BR-7959-01 2 67631007 67631007 A G ETAA1 Missense_Mutation p.D398G 0.40 deleterious(0.01) benign(0.048) TCGA-BR-7959-01 3 44700257 44700257 A C ZNF35 Missense_Mutation p.K134N 0.39 tolerated(0.15) benign(0.002) TCGA-BR-7959-01 3 50153511 50153511 G A RBM5 Intron 0.27 TCGA-BR-7959-01 3 52327139 52327139 G A GLYCTK Silent p.R523R 0.11 TCGA-BR-7959-01 4 48611819 48611819 C T FRYL Missense_Mutation p.D145N 0.25 deleterious(0) possibly_damaging(0.572) TCGA-BR-7959-01 4 5754776 5754776 C T EVC Missense_Mutation p.R438W 0.45 deleterious(0) probably_damaging(0.95) TCGA-BR-7959-01 4 98893457 98893457 C T STPG2 Missense_Mutation p.A303T 0.38 tolerated(1) benign(0.001) TCGA-BR-7959-01 5 140615744 140615744 G A PCDHB18 RNA 0.39 TCGA-BR-7959-01 5 140625810 140625810 C T PCDHB15 Nonsense_Mutation p.R222* 0.40 TCGA-BR-7959-01 5 14387669 14387669 C A TRIO Missense_Mutation p.F1231L 0.23 probably_damaging(0.987) TCGA-BR-7959-01 6 40400252 40400252 G A LRFN2 Missense_Mutation p.R201C 0.48 deleterious(0) probably_damaging(1) TCGA-BR-7959-01 6 90368581 90368581 C T MDN1 Silent p.E4923E 0.21 TCGA-BR-7959-01 7 100839531 100839531 G A MOGAT3 Missense_Mutation p.R270C 0.23 tolerated(0.16) benign(0.175) TCGA-BR-7959-01 7 102985165 102985165 C T DNAJC2 5'UTR 0.32 TCGA-BR-7959-01 7 129663367 129663367 C G ZC3HC1 Missense_Mutation p.C406S 0.06 tolerated(0.37) probably_damaging(0.999) TCGA-BR-7959-01 7 149576436 149576436 C G ATP6V0E2 Silent p.L104L 0.15 TCGA-BR-7959-01 7 154684280 154684280 C T DPP6 3'UTR 0.30 TCGA-BR-7959-01 7 38370200 38370200 G C TRGV8 Missense_Mutation p.T33S 0.06 deleterious(0.04) benign(0.138) TCGA-BR-7959-01 7 53103739 53103739 T A POM121L12 Nonsense_Mutation p.C125* 0.17 TCGA-BR-7959-01 7 99013872 99013872 C G BUD31 Missense_Mutation p.A69G 0.15 tolerated(0.07) benign(0.16) TCGA-BR-7959-01 8 104940099 104940099 T G RIMS2 Silent p.P742P 0.45 TCGA-BR-7959-01 8 107715309 107715309 C T OXR1 Missense_Mutation p.S285F 0.27 tolerated(0.08) benign(0.026) TCGA-BR-7959-01 8 128428407 128428407 C G POU5F1B Missense_Mutation p.A99G 0.13 tolerated(0.18) benign(0.001) TCGA-BR-7959-01 8 139697494 139697494 G T COL22A1 Missense_Mutation p.P975H 0.29 unknown(0) TCGA-BR-7959-01 8 145111978 145111978 C T OPLAH Missense_Mutation p.V527M 0.45 deleterious(0) benign(0.333) TCGA-BR-7959-01 8 15978102 15978102 T G MSR1 Missense_Mutation p.K349N 0.15 tolerated(0.09) benign(0.002) TCGA-BR-7959-01 8 41161050 41161050 C T SFRP1 Silent p.T184T 0.17 TCGA-BR-7959-01 8 41547824 41547824 A G ANK1 Missense_Mutation p.F1383S 0.23 deleterious(0.02) benign(0.272) TCGA-BR-7959-01 8 67547081 67547081 T - VCPIP1 Frame_Shift_Del p.K1108Nfs*37 0.15 TCGA-BR-7959-01 8 98973669 98973669 G A MATN2 Missense_Mutation p.C290Y 0.38 deleterious(0) probably_damaging(0.994) TCGA-BR-7959-01 9 118950379 118950379 C T PAPPA Silent p.N454N 0.15 TCGA-BR-7959-01 9 129641763 129641763 C T ZBTB34 Missense_Mutation p.L25F 0.10 deleterious(0.02) probably_damaging(1) TCGA-BR-7959-01 9 139650014 139650014 G A LCN8 Intron 0.12 TCGA-BR-7959-01 9 140728948 140728948 C T EHMT1 Missense_Mutation p.R1230C 0.08 deleterious(0) probably_damaging(0.988) TCGA-BR-7959-01 9 33001628 33001628 C A APTX 5'Flank 0.12 TCGA-BR-7959-01 9 33469280 33469280 G A NOL6 Missense_Mutation p.R263C 0.17 deleterious(0) probably_damaging(0.959) TCGA-BR-7959-01 9 86498933 86498933 C A KIF27 Missense_Mutation p.G747V 0.11 deleterious(0) probably_damaging(0.979) TCGA-BR-7959-01 9 99800225 99800225 G T CTSV Missense_Mutation p.A34E 0.09 tolerated(0.83) benign(0.117) TCGA-BR-7959-01 X 100808144 100808144 G T ARMCX1 Missense_Mutation p.K77N 0.46 tolerated_low_confidence(0.22) benign(0.002) TCGA-BR-7959-01 X 69282672 69282672 A T OTUD6A Nonsense_Mutation p.R100* 0.62 TCGA-BR-7959-01 X 71800871 71800871 C T PHKA1 Missense_Mutation p.S1218N 0.31 tolerated(0.17) benign(0.206) TCGA-BR-8058-01 10 70716038 70716038 A G DDX21 Silent p.K19K 0.16 TCGA-BR-8058-01 10 72360571 72360571 C G PRF1 Missense_Mutation p.E30Q 0.23 deleterious(0) possibly_damaging(0.555) TCGA-BR-8058-01 11 55321938 55321938 G C OR4C15 Missense_Mutation p.L52F 0.11 tolerated_low_confidence(0.09) benign(0.262) TCGA-BR-8058-01 11 70332306 70332306 G C SHANK2 Silent p.A1365A 0.10 TCGA-BR-8058-01 11 82868552 82868552 C G PCF11 Nonsense_Mutation p.S24* 0.29 TCGA-BR-8058-01 11 82868584 82868584 C G PCF11 Missense_Mutation p.P35A 0.27 deleterious(0) benign(0.021) TCGA-BR-8058-01 11 82868592 82868592 C T PCF11 Silent p.I37I 0.31 TCGA-BR-8058-01 11 9225374 9225374 T G DENND5A Missense_Mutation p.K261T 0.14 deleterious(0.01) benign(0.206) TCGA-BR-8058-01 12 6128084 6128084 C T VWF Silent p.A1500A 0.12 TCGA-BR-8058-01 13 29598795 29598795 A C MTUS2 5'UTR 0.18 TCGA-BR-8058-01 13 39264487 39264487 G A FREM2 Silent p.E1002E 0.18 TCGA-BR-8058-01 14 45693557 45693557 T C MIS18BP1 Missense_Mutation p.T745A 0.30 tolerated(0.25) benign(0) TCGA-BR-8058-01 14 92583890 92583890 C A NDUFB1 Missense_Mutation p.S78I 0.10 deleterious(0) benign(0.028) TCGA-BR-8058-01 15 101447328 101447328 T G ALDH1A3 Missense_Mutation p.I412M 0.22 deleterious(0) probably_damaging(0.958) TCGA-BR-8058-01 15 52486025 52486025 A G MYO5C 3'UTR 0.19 TCGA-BR-8058-01 15 67479784 67479784 A G SMAD3 Missense_Mutation p.Y364C 0.17 deleterious(0) probably_damaging(0.998) TCGA-BR-8058-01 15 89421430 89421430 G A HAPLN3 Missense_Mutation p.A285V 0.14 deleterious(0.05) probably_damaging(0.992) TCGA-BR-8058-01 16 68330347 68330347 C A SLC7A6 Missense_Mutation p.F400L 0.13 deleterious(0.02) benign(0.254) TCGA-BR-8058-01 16 68844172 68844172 G T CDH1 Missense_Mutation p.D254Y 0.29 deleterious(0) probably_damaging(1) TCGA-BR-8058-01 16 81399030 81399030 G A GAN Silent p.Q483Q 0.06 TCGA-BR-8058-01 17 39388890 39388890 G C KRTAP9-3 Missense_Mutation p.C46S 0.20 tolerated(0.09) unknown(0) TCGA-BR-8058-01 17 63221598 63221598 T C RGS9 Missense_Mutation p.V629A 0.05 tolerated_low_confidence(0.16) benign(0.003) TCGA-BR-8058-01 17 6607292 6607292 A T SLC13A5 Missense_Mutation p.I151N 0.17 deleterious(0) probably_damaging(0.967) TCGA-BR-8058-01 18 50592506 50592506 A G DCC Missense_Mutation p.T411A 0.29 tolerated(1) benign(0.001) TCGA-BR-8058-01 19 20045214 20045214 G A ZNF93 Missense_Mutation p.E484K 0.20 tolerated(0.19) benign(0.157) TCGA-BR-8058-01 19 36128216 36128216 A G RBM42 Missense_Mutation p.D431G 0.09 deleterious(0.01) unknown(0) TCGA-BR-8058-01 19 3982022 3982022 T C EEF2 Missense_Mutation p.S274G 0.09 tolerated(0.07) benign(0.111) TCGA-BR-8058-01 19 40711185 40711185 C A MAP3K10 Missense_Mutation p.D390E 0.10 tolerated(1) benign(0.009) TCGA-BR-8058-01 19 47137330 47137330 G A GNG8 3'Flank 0.11 TCGA-BR-8058-01 1 153954550 153954550 G A RAB13 3'UTR 0.12 TCGA-BR-8058-01 1 161495404 161495404 T G HSPA6 Missense_Mutation p.V319G 0.11 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-BR-8058-01 1 24018320 24018320 G T RPL11 Splice_Site p.X2_splice 0.19 TCGA-BR-8058-01 1 26189730 26189730 G A PAQR7 Silent p.L201L 0.10 TCGA-BR-8058-01 1 43647330 43647330 C T WDR65 Missense_Mutation p.R95W 0.10 deleterious(0) probably_damaging(0.998) TCGA-BR-8058-01 1 78958499 78958499 C T PTGFR Missense_Mutation p.T24M 0.14 tolerated(0.27) benign(0.005) TCGA-BR-8058-01 1 93301861 93301861 G C RPL5 Missense_Mutation p.D147H 0.06 deleterious(0) probably_damaging(0.912) TCGA-BR-8058-01 22 36681289 36681289 G T MYH9 Missense_Mutation p.N1787K 0.13 possibly_damaging(0.882) TCGA-BR-8058-01 22 37771219 37771219 G A ELFN2 Missense_Mutation p.T119M 0.07 deleterious(0) probably_damaging(0.994) TCGA-BR-8058-01 22 37903838 37903838 G C CARD10 Missense_Mutation p.Q397E 0.06 tolerated(0.09) benign(0.039) TCGA-BR-8058-01 22 50686482 50686482 C A HDAC10 Missense_Mutation p.A392S 0.15 tolerated(0.32) benign(0.006) TCGA-BR-8058-01 2 167262220 167262220 C T SCN7A Missense_Mutation p.R1640H 0.26 deleterious(0.02) probably_damaging(0.991) TCGA-BR-8058-01 3 132350306 132350306 C T ACAD11 Silent p.V240V 0.10 TCGA-BR-8058-01 3 58625893 58625893 C T FAM3D Missense_Mutation p.A112T 0.05 tolerated(0.27) benign(0.005) TCGA-BR-8058-01 5 176017146 176017146 C T CDHR2 Missense_Mutation p.R1092W 0.16 deleterious(0) probably_damaging(0.934) TCGA-BR-8058-01 5 58273028 58273028 A G PDE4D Missense_Mutation p.V566A 0.09 tolerated_low_confidence(0.08) possibly_damaging(0.582) TCGA-BR-8058-01 5 76029103 76029103 T A F2R Missense_Mutation p.F351L 0.08 tolerated(0.15) probably_damaging(0.932) TCGA-BR-8058-01 6 401655 401655 C T IRF4 Missense_Mutation p.A326V 0.11 deleterious(0.02) probably_damaging(1) TCGA-BR-8058-01 6 88318928 88318928 G C ORC3 Missense_Mutation p.D232H 0.13 deleterious(0) probably_damaging(0.998) TCGA-BR-8058-01 7 131883272 131883272 A C PLXNA4 Missense_Mutation p.L904V 0.12 tolerated(1) benign(0.007) TCGA-BR-8058-01 7 149498906 149498906 C A SSPO RNA 0.17 TCGA-BR-8058-01 8 125989941 125989941 C T ZNF572 Silent p.F477F 0.10 TCGA-BR-8058-01 8 6479209 6479209 T C MCPH1 Silent p.L817L 0.14 TCGA-BR-8058-01 8 70488242 70488242 G A SULF1 Missense_Mutation p.M70I 0.24 tolerated(0.08) benign(0.012) TCGA-BR-8058-01 9 121929759 121929759 C T BRINP1 Missense_Mutation p.R630Q 0.05 tolerated(0.58) possibly_damaging(0.885) TCGA-BR-8058-01 9 20346483 20346483 G A MLLT3 Silent p.V555V 0.11 TCGA-BR-8058-01 9 32543727 32543727 C G TOPORS Missense_Mutation p.G266R 0.14 deleterious(0) probably_damaging(1) TCGA-BR-8058-01 X 147007065 147007065 C G FMR1 Missense_Mutation p.P38A 0.10 tolerated(0.11) benign(0.004) TCGA-BR-8058-01 X 49834605 49834605 C A CLCN5 Missense_Mutation p.P79T 0.21 deleterious(0.05) benign(0.144) TCGA-BR-8058-01 X 51640687 51640687 G A MAGED1 Missense_Mutation p.E567K 0.09 deleterious_low_confidence(0.04) probably_damaging(0.999) TCGA-BR-8058-01 X 76937284 76937284 G C ATRX Nonsense_Mutation p.S1155* 0.06 TCGA-BR-8059-01 10 101656136 101656136 C T DNMBP Missense_Mutation p.G980D 0.17 tolerated(0.09) possibly_damaging(0.718) TCGA-BR-8059-01 10 101945437 101945437 G A ERLIN1 5'UTR 0.13 TCGA-BR-8059-01 10 102763727 102763727 G T LZTS2 Missense_Mutation p.G291V 0.20 deleterious(0.01) probably_damaging(0.993) TCGA-BR-8059-01 10 104139103 104139103 G T GBF1 Missense_Mutation p.E1518D 0.08 tolerated(0.18) benign(0.05) TCGA-BR-8059-01 10 105205318 105205318 C A PDCD11 3'UTR 0.11 TCGA-BR-8059-01 10 116048905 116048905 G A VWA2 Silent p.A593A 0.22 TCGA-BR-8059-01 10 12001356 12001356 C T UPF2 Splice_Site p.X729_splice 0.08 TCGA-BR-8059-01 10 120810115 120810115 C T EIF3A Silent p.Q797Q 0.16 TCGA-BR-8059-01 10 124396684 124396684 C T DMBT1 Silent p.S2137S 0.11 TCGA-BR-8059-01 10 125426517 125426517 G T GPR26 Silent p.V198V 0.25 TCGA-BR-8059-01 10 128192844 128192844 G A C10orf90 Silent p.L309L 0.21 TCGA-BR-8059-01 10 128936056 128936056 C A FAM196A 3'UTR 0.06 TCGA-BR-8059-01 10 131958297 131958297 T A GLRX3 Nonsense_Mutation p.Y80* 0.23 TCGA-BR-8059-01 10 134188716 134188716 A G LRRC27 Silent p.G521G 0.18 TCGA-BR-8059-01 10 134219345 134219345 G A PWWP2B Silent p.S447S 0.19 TCGA-BR-8059-01 10 134219558 134219558 C T PWWP2B Silent p.D518D 0.11 TCGA-BR-8059-01 10 134503931 134503931 A - INPP5A Frame_Shift_Del p.N116Tfs*25 0.14 TCGA-BR-8059-01 10 13483670 13483670 T C BEND7 Intron 0.21 TCGA-BR-8059-01 10 14951067 14951067 C T DCLRE1C Silent p.L473L 0.10 TCGA-BR-8059-01 10 16866939 16866939 G T CUBN 3'UTR 0.14 TCGA-BR-8059-01 10 17363149 17363149 G A ST8SIA6 Missense_Mutation p.L309F 0.18 tolerated(0.29) benign(0.14) TCGA-BR-8059-01 10 21959610 21959610 C G MLLT10 Nonsense_Mutation p.S343* 0.21 TCGA-BR-8059-01 10 26385597 26385597 G A MYO3A Missense_Mutation p.G588S 0.14 deleterious(0) probably_damaging(0.994) TCGA-BR-8059-01 10 26785260 26785260 C G APBB1IP Missense_Mutation p.P34A 0.06 tolerated(0.13) benign(0.015) TCGA-BR-8059-01 10 27459272 27459272 A - MASTL Frame_Shift_Del p.T464Lfs*3 0.23 TCGA-BR-8059-01 10 28196696 28196696 G A ARMC4 Missense_Mutation p.R836C 0.14 deleterious(0) probably_damaging(0.932) TCGA-BR-8059-01 10 43650561 43650561 A C CSGALNACT2 5'UTR 0.21 TCGA-BR-8059-01 10 47087134 47087134 G A NPY4R Silent p.S117S 0.09 TCGA-BR-8059-01 10 49447648 49447648 C T FRMPD2 Missense_Mutation p.R263H 0.17 tolerated(0.08) possibly_damaging(0.454) TCGA-BR-8059-01 10 49609720 49609720 G A MAPK8 Missense_Mutation p.R6H 0.13 tolerated(0.33) benign(0.127) TCGA-BR-8059-01 10 50872965 50872965 T G CHAT Missense_Mutation p.F707C 0.08 deleterious(0) probably_damaging(0.999) TCGA-BR-8059-01 10 50872972 50872972 A G CHAT Silent p.K709K 0.08 TCGA-BR-8059-01 10 51892678 51892678 T A FAM21A Missense_Mutation p.D1333E 0.16 deleterious(0) probably_damaging(0.998) TCGA-BR-8059-01 10 55566740 55566740 T C PCDH15 Missense_Mutation p.N1549D 0.19 deleterious_low_confidence(0) benign(0.096) TCGA-BR-8059-01 10 58118615 58118615 G A ZWINT Missense_Mutation p.L192F 0.13 deleterious(0.01) probably_damaging(0.934) TCGA-BR-8059-01 10 61043178 61043178 C A FAM13C Missense_Mutation p.K179N 0.17 deleterious(0.01) probably_damaging(1) TCGA-BR-8059-01 10 71008477 71008477 C T HKDC1 Silent p.D521D 0.14 TCGA-BR-8059-01 10 71010409 71010409 G T HKDC1 Splice_Site p.X612_splice 0.12 TCGA-BR-8059-01 10 71899686 71899686 C T TYSND1 Silent p.K565K 0.11 TCGA-BR-8059-01 10 7214605 7214605 C - SFMBT2 Frame_Shift_Del p.R668Kfs*163 0.24 TCGA-BR-8059-01 10 78084190 78084190 A G C10orf11 Missense_Mutation p.E155G 0.05 tolerated(0.07) benign(0.002) TCGA-BR-8059-01 10 87966267 87966267 C T GRID1 Missense_Mutation p.R125H 0.22 deleterious(0) probably_damaging(0.998) TCGA-BR-8059-01 10 89536099 89536099 C A ATAD1 Missense_Mutation p.L223F 0.06 tolerated(0.07) possibly_damaging(0.498) TCGA-BR-8059-01 10 93726391 93726391 T C BTAF1 Intron 0.20 TCGA-BR-8059-01 10 94294388 94294388 A G IDE Silent p.H146H 0.18 TCGA-BR-8059-01 10 95381725 95381725 C G PDE6C Missense_Mutation p.L254V 0.11 deleterious(0.03) probably_damaging(0.997) TCGA-BR-8059-01 11 117161685 117161685 G A BACE1 Silent p.F341F 0.10 TCGA-BR-8059-01 11 118253471 118253471 T C UBE4A Missense_Mutation p.F733S 0.25 deleterious(0) probably_damaging(0.999) TCGA-BR-8059-01 11 118968584 118968584 G A DPAGT1 Missense_Mutation p.P300S 0.10 deleterious(0.02) probably_damaging(1) TCGA-BR-8059-01 11 119206040 119206040 G A RNF26 Missense_Mutation p.E70K 0.06 deleterious(0.02) probably_damaging(0.998) TCGA-BR-8059-01 11 124294407 124294407 G A OR8B4 Missense_Mutation p.R121C 0.16 deleterious_low_confidence(0.01) benign(0.012) TCGA-BR-8059-01 11 124619648 124619648 C T VSIG2 Missense_Mutation p.R181H 0.17 tolerated(0.4) benign(0.01) TCGA-BR-8059-01 11 1275541 1275541 T C MUC5B Missense_Mutation p.V5146A 0.28 unknown(0) TCGA-BR-8059-01 11 17434263 17434263 G A ABCC8 Nonsense_Mutation p.R836* 0.19 TCGA-BR-8059-01 11 17531359 17531359 C T USH1C Silent p.P519P 0.21 TCGA-BR-8059-01 11 18320518 18320518 C A HPS5 Splice_Site p.X329_splice 0.13 TCGA-BR-8059-01 11 22363169 22363169 A G SLC17A6 Missense_Mutation p.D61G 0.12 deleterious(0.02) benign(0.147) TCGA-BR-8059-01 11 28090826 28090826 G C KIF18A Missense_Mutation p.Q524E 0.18 tolerated(0.23) benign(0.001) TCGA-BR-8059-01 11 292553 292553 A C ATHL1 Missense_Mutation p.K345T 0.15 deleterious(0) probably_damaging(1) TCGA-BR-8059-01 11 33054300 33054300 G T DEPDC7 Silent p.L408L 0.12 TCGA-BR-8059-01 11 33564426 33564426 C G KIAA1549L Silent p.A142A 0.20 TCGA-BR-8059-01 11 36680738 36680738 T C C11orf74 3'UTR 0.18 TCGA-BR-8059-01 11 47656236 47656236 G A MTCH2 Silent p.H119H 0.09 TCGA-BR-8059-01 11 4870137 4870137 G T OR51S1 Missense_Mutation p.P101H 0.22 tolerated(0.08) probably_damaging(0.977) TCGA-BR-8059-01 11 4945149 4945149 C T OR51G1 Missense_Mutation p.A141T 0.10 tolerated(0.39) benign(0.002) TCGA-BR-8059-01 11 5529644 5529644 G - UBQLN3 Frame_Shift_Del p.P382Hfs*20 0.14 TCGA-BR-8059-01 11 55890547 55890547 A G OR8H3 Silent p.G233G 0.18 TCGA-BR-8059-01 11 56113850 56113850 T G OR8K1 Missense_Mutation p.I112M 0.13 tolerated_low_confidence(0.97) benign(0.013) TCGA-BR-8059-01 11 56258216 56258216 A G OR5M8 Missense_Mutation p.F211L 0.13 tolerated(1) benign(0.001) TCGA-BR-8059-01 11 56344805 56344805 A C OR5M10 Missense_Mutation p.H131Q 0.23 tolerated(0.09) benign(0.008) TCGA-BR-8059-01 11 57373908 57373908 A C SERPING1 Missense_Mutation p.K306T 0.18 tolerated(0.08) benign(0.081) TCGA-BR-8059-01 11 58295583 58295583 C G LPXN Missense_Mutation p.R280P 0.11 deleterious(0) probably_damaging(0.973) TCGA-BR-8059-01 11 58980392 58980392 G T MPEG1 5'UTR 0.17 TCGA-BR-8059-01 11 61404281 61404281 C T RPLP0P2 RNA 0.23 TCGA-BR-8059-01 11 64597021 64597021 C T CDC42BPG Missense_Mutation p.A1297T 0.21 deleterious(0.02) possibly_damaging(0.825) TCGA-BR-8059-01 11 64699297 64699297 T - PPP2R5B Frame_Shift_Del p.F359Lfs*29 0.18 TCGA-BR-8059-01 11 64824895 64824895 A C NAALADL1 Missense_Mutation p.L184R 0.12 deleterious(0) probably_damaging(0.996) TCGA-BR-8059-01 11 64940287 64940288 - C SPDYC Frame_Shift_Ins p.C219Lfs*13 0.19 TCGA-BR-8059-01 11 65294436 65294436 C T SCYL1 Missense_Mutation p.P233S 0.12 deleterious(0) possibly_damaging(0.588) TCGA-BR-8059-01 11 65793753 65793753 C A CATSPER1 Missense_Mutation p.R33M 0.06 deleterious(0) possibly_damaging(0.878) TCGA-BR-8059-01 11 66131005 66131005 G A SLC29A2 Missense_Mutation p.H425Y 0.24 deleterious(0.01) benign(0.442) TCGA-BR-8059-01 11 6638248 6638248 G A TPP1 Silent p.D215D 0.18 TCGA-BR-8059-01 11 67134968 67134968 T C CLCF1 Missense_Mutation p.Y49C 0.13 deleterious(0) possibly_damaging(0.889) TCGA-BR-8059-01 11 67201739 67201739 C A RPS6KB2 Missense_Mutation p.P347H 0.19 deleterious(0) probably_damaging(0.995) TCGA-BR-8059-01 11 67267784 67267784 C T PITPNM1 Missense_Mutation p.R250H 0.10 tolerated(0.08) probably_damaging(0.973) TCGA-BR-8059-01 11 68030283 68030283 A C C11orf24 Silent p.A60A 0.20 TCGA-BR-8059-01 11 71146457 71146457 G A DHCR7 Silent p.A464A 0.06 TCGA-BR-8059-01 11 74799925 74799925 C A OR2AT4 Missense_Mutation p.M278I 0.10 tolerated(0.05) benign(0.063) TCGA-BR-8059-01 11 759008 759008 G T TALDO1 Nonsense_Mutation p.E94* 0.22 TCGA-BR-8059-01 11 76506961 76506961 C G TSKU Missense_Mutation p.P101A 0.22 tolerated(0.07) probably_damaging(0.999) TCGA-BR-8059-01 11 78285486 78285486 G A NARS2 Silent p.S16S 0.19 TCGA-BR-8059-01 11 85733455 85733455 A G PICALM Missense_Mutation p.V136A 0.10 tolerated(0.06) benign(0.103) TCGA-BR-8059-01 11 9090971 9090971 C T SCUBE2 Missense_Mutation p.A197T 0.13 deleterious(0.04) benign(0.045) TCGA-BR-8059-01 11 92533395 92533395 T G FAT3 Missense_Mutation p.L2406V 0.15 probably_damaging(0.999) TCGA-BR-8059-01 11 94759567 94759567 C T KDM4E Silent p.H282H 0.10 TCGA-BR-8059-01 11 94862078 94862078 A - ENDOD1 Frame_Shift_Del p.I282Sfs*64 0.10 TCGA-BR-8059-01 11 9546824 9546824 C G ZNF143 Missense_Mutation p.T575S 0.12 tolerated(0.74) benign(0.005) TCGA-BR-8059-01 11 9878204 9878204 G A SBF2 Missense_Mutation p.R722C 0.13 deleterious(0) probably_damaging(0.998) TCGA-BR-8059-01 12 100169377 100169377 G T ANKS1B Missense_Mutation p.Q304K 0.20 tolerated(0.78) benign(0.014) TCGA-BR-8059-01 12 105597552 105597552 A - APPL2 Frame_Shift_Del p.F217Lfs*28 0.13 TCGA-BR-8059-01 12 10777340 10777340 C T STYK1 Missense_Mutation p.R279Q 0.18 tolerated(0.43) benign(0.028) TCGA-BR-8059-01 12 10959538 10959544 AGTTATT - TAS2R8 Frame_Shift_Del p.I13Efs*5 0.10 TCGA-BR-8059-01 12 111746230 111746230 G T CUX2 Splice_Site p.X387_splice 0.13 TCGA-BR-8059-01 12 112182513 112182513 G A ACAD10 Nonsense_Mutation p.W625* 0.14 TCGA-BR-8059-01 12 112926847 112926847 C T PTPN11 Silent p.D489D 0.18 TCGA-BR-8059-01 12 113314620 113314620 C A RPH3A Missense_Mutation p.P374T 0.11 tolerated(0.08) benign(0.003) TCGA-BR-8059-01 12 113385824 113385824 G C OAS3 Missense_Mutation p.A317P 0.28 deleterious(0) probably_damaging(1) TCGA-BR-8059-01 12 113436174 113436174 A - OAS2 Frame_Shift_Del p.N323Tfs*41 0.13 TCGA-BR-8059-01 12 117612011 117612011 T C FBXO21 Missense_Mutation p.Q292R 0.18 tolerated(0.09) benign(0.006) TCGA-BR-8059-01 12 118828954 118828954 C T SUDS3 Silent p.Y128Y 0.18 TCGA-BR-8059-01 12 12334193 12334193 C T LRP6 Missense_Mutation p.R386H 0.06 deleterious(0) probably_damaging(0.994) TCGA-BR-8059-01 12 129293469 129293469 A C SLC15A4 Silent p.A374A 0.15 TCGA-BR-8059-01 12 132404023 132404023 G A ULK1 Silent p.A897A 0.07 TCGA-BR-8059-01 12 133210934 133210934 C A POLE Missense_Mutation p.D1948Y 0.15 deleterious(0.01) benign(0.035) TCGA-BR-8059-01 12 133219578 133219578 C T POLE Missense_Mutation p.R1519H 0.24 deleterious(0.01) probably_damaging(0.95) TCGA-BR-8059-01 12 13716375 13716375 G A GRIN2B Missense_Mutation p.P1266L 0.25 tolerated(0.36) benign(0.001) TCGA-BR-8059-01 12 13768095 13768095 A C GRIN2B Missense_Mutation p.V536G 0.22 deleterious(0) probably_damaging(0.993) TCGA-BR-8059-01 12 13906806 13906806 T G GRIN2B Missense_Mutation p.Q152P 0.18 deleterious(0.01) benign(0.055) TCGA-BR-8059-01 12 15370522 15370522 G T RERG 5'UTR 0.27 TCGA-BR-8059-01 12 20833224 20833224 G A PDE3A 3'UTR 0.10 TCGA-BR-8059-01 12 21220293 21220293 C T SLCO1B7 Missense_Mutation p.H528Y 0.38 tolerated(0.71) benign(0.042) TCGA-BR-8059-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.22 deleterious(0) benign(0.361) TCGA-BR-8059-01 12 33031100 33031100 C T PKP2 Silent p.P238P 0.26 TCGA-BR-8059-01 12 40645122 40645122 G A LRRK2 Nonsense_Mutation p.W349* 0.10 TCGA-BR-8059-01 12 432830 432830 G A KDM5A Missense_Mutation p.R696W 0.23 deleterious(0.02) probably_damaging(0.918) TCGA-BR-8059-01 12 45209887 45209887 T C NELL2 Missense_Mutation p.T123A 0.10 tolerated(0.54) benign(0.054) TCGA-BR-8059-01 12 45741846 45741846 C T ANO6 Silent p.H148H 0.08 TCGA-BR-8059-01 12 48737166 48737166 G A ZNF641 Nonsense_Mutation p.R303* 0.13 TCGA-BR-8059-01 12 4919281 4919281 C T KCNA6 Missense_Mutation p.A25V 0.19 tolerated_low_confidence(0.46) benign(0.006) TCGA-BR-8059-01 12 49462855 49462855 G A RHEBL1 Silent p.G29G 0.11 TCGA-BR-8059-01 12 51034504 51034504 T A DIP2B Intron 0.17 TCGA-BR-8059-01 12 51116998 51116998 C T DIP2B Silent p.I1060I 0.21 TCGA-BR-8059-01 12 52565273 52565273 G A KRT80 Missense_Mutation p.S423F 0.10 tolerated(0.08) benign(0.004) TCGA-BR-8059-01 12 52885450 52885450 T G KRT6A Missense_Mutation p.K204T 0.09 tolerated(0.17) benign(0.304) TCGA-BR-8059-01 12 52946555 52946555 G T KRT71 Missense_Mutation p.H103N 0.18 deleterious(0.02) benign(0.097) TCGA-BR-8059-01 12 53004418 53004418 G A KRT73 Silent p.L438L 0.18 TCGA-BR-8059-01 12 53202626 53202626 G T KRT4 Silent p.S281S 0.13 TCGA-BR-8059-01 12 53564261 53564261 G A CSAD Missense_Mutation p.A225V 0.14 deleterious(0.01) probably_damaging(1) TCGA-BR-8059-01 12 54333266 54333266 G A HOXC13 Silent p.S192S 0.30 TCGA-BR-8059-01 12 54651347 54651347 C T CBX5 Missense_Mutation p.V30M 0.14 deleterious(0.01) benign(0.14) TCGA-BR-8059-01 12 55688543 55688543 C T OR6C6 Silent p.L158L 0.15 TCGA-BR-8059-01 12 56495520 56495520 G A ERBB3 Missense_Mutation p.S1237N 0.08 tolerated(0.16) benign(0.3) TCGA-BR-8059-01 12 57167625 57167625 A G HSD17B6 5'UTR 0.23 TCGA-BR-8059-01 12 57843751 57843751 C G INHBC Missense_Mutation p.N335K 0.12 deleterious(0) probably_damaging(0.996) TCGA-BR-8059-01 12 58158285 58158285 C T CYP27B1 Missense_Mutation p.E338K 0.12 tolerated(0.14) benign(0.017) TCGA-BR-8059-01 12 6153589 6153589 G - VWF Frame_Shift_Del p.M771Wfs*30 0.19 TCGA-BR-8059-01 12 6559355 6559355 C T CD27 Silent p.N95N 0.14 TCGA-BR-8059-01 12 6692077 6692077 G A CHD4 Silent p.G1391G 0.05 TCGA-BR-8059-01 12 85500378 85500378 A T LRRIQ1 Missense_Mutation p.Q1121L 0.12 deleterious(0) benign(0.421) TCGA-BR-8059-01 12 8687164 8687164 G T CLEC4E 3'UTR 0.12 TCGA-BR-8059-01 12 88420304 88420304 G A C12orf50 Missense_Mutation p.P32S 0.12 deleterious(0) probably_damaging(0.999) TCGA-BR-8059-01 12 88553917 88553917 T - TMTC3 Frame_Shift_Del p.L180* 0.20 TCGA-BR-8059-01 12 9227269 9227269 C T A2M Missense_Mutation p.A1215T 0.15 tolerated(0.15) benign(0.249) TCGA-BR-8059-01 13 109507879 109507879 G A MYO16 Missense_Mutation p.R424H 0.12 deleterious(0) probably_damaging(1) TCGA-BR-8059-01 13 112722172 112722172 G A SOX1 Missense_Mutation p.R67H 0.16 deleterious(0.02) probably_damaging(0.999) TCGA-BR-8059-01 13 114748732 114748732 G T RASA3 3'UTR 0.13 TCGA-BR-8059-01 13 19748247 19748247 T G TUBA3C Missense_Mutation p.K370T 0.25 deleterious_low_confidence(0.02) benign(0.364) TCGA-BR-8059-01 13 27333706 27333706 C A GPR12 Missense_Mutation p.A87S 0.18 deleterious(0) probably_damaging(0.991) TCGA-BR-8059-01 13 32527308 32527308 G T EEF1DP3 RNA 0.17 TCGA-BR-8059-01 13 37446842 37446842 T C SMAD9 Missense_Mutation p.H208R 0.11 tolerated(0.19) benign(0.001) TCGA-BR-8059-01 13 39261866 39261866 T G FREM2 Missense_Mutation p.C129G 0.38 deleterious(0) probably_damaging(0.999) TCGA-BR-8059-01 13 42793377 42793377 G A DGKH Silent p.S1075S 0.19 TCGA-BR-8059-01 13 42874175 42874175 G A AKAP11 Silent p.P431P 0.24 TCGA-BR-8059-01 13 49710541 49710542 - AAATTG FNDC3A In_Frame_Ins p.L190_K191dup 0.10 TCGA-BR-8059-01 13 49852489 49852489 A C CDADC1 Missense_Mutation p.S352R 0.18 tolerated_low_confidence(0.22) benign(0.094) TCGA-BR-8059-01 13 50096243 50096243 G T PHF11 Missense_Mutation p.Q190H 0.17 tolerated(0.13) possibly_damaging(0.711) TCGA-BR-8059-01 13 52004473 52004473 G C INTS6 Missense_Mutation p.T129S 0.13 tolerated(0.08) benign(0.146) TCGA-BR-8059-01 13 67800090 67800090 A G PCDH9 Missense_Mutation p.V828A 0.18 deleterious(0) benign(0.314) TCGA-BR-8059-01 13 76416988 76416988 C A LMO7 Missense_Mutation p.P1112T 0.07 deleterious(0.02) possibly_damaging(0.908) TCGA-BR-8059-01 13 78133954 78133954 T C SCEL Silent p.G59G 0.17 TCGA-BR-8059-01 13 79190731 79190731 G T RNF219 Missense_Mutation p.P389T 0.11 deleterious(0) benign(0.309) TCGA-BR-8059-01 13 93879608 93879608 G T GPC6 5'UTR 0.12 TCGA-BR-8059-01 13 95839089 95839089 C T ABCC4 Missense_Mutation p.V471M 0.18 deleterious(0.04) possibly_damaging(0.887) TCGA-BR-8059-01 14 101442166 101442166 T A SNORD114-18 RNA 0.12 TCGA-BR-8059-01 14 104026975 104026975 G C BAG5 Missense_Mutation p.S217C 0.18 deleterious_low_confidence(0) probably_damaging(0.937) TCGA-BR-8059-01 14 104194223 104194223 C T ZFYVE21 Silent p.Y110Y 0.30 TCGA-BR-8059-01 14 104205315 104205315 G A PPP1R13B Missense_Mutation p.H880Y 0.10 deleterious(0) benign(0.397) TCGA-BR-8059-01 14 106725392 106725392 T C IGHV3-23 Missense_Mutation p.S54G 0.10 tolerated_low_confidence(0.24) benign(0) TCGA-BR-8059-01 14 21025068 21025068 G A RNASE9 Missense_Mutation p.T59I 0.19 deleterious(0.01) possibly_damaging(0.804) TCGA-BR-8059-01 14 21058544 21058544 G A RNASE12 Silent p.G113G 0.15 TCGA-BR-8059-01 14 24029053 24029053 G - AP1G2 Frame_Shift_Del p.L755Cfs*3 0.20 TCGA-BR-8059-01 14 24528103 24528103 C T LRRC16B Silent p.F493F 0.14 TCGA-BR-8059-01 14 24530829 24530829 A G LRRC16B Missense_Mutation p.I810V 0.11 tolerated(1) benign(0.076) TCGA-BR-8059-01 14 31856489 31856489 C T HEATR5A Silent p.P49P 0.18 TCGA-BR-8059-01 14 32563365 32563365 G A ARHGAP5 Missense_Mutation p.A1164T 0.16 tolerated(0.67) benign(0.006) TCGA-BR-8059-01 14 35037080 35037081 - T SNX6 Frame_Shift_Ins p.I366Nfs*3 0.16 TCGA-BR-8059-01 14 36005050 36005050 C T INSM2 Missense_Mutation p.P531L 0.22 deleterious(0) probably_damaging(1) TCGA-BR-8059-01 14 39509940 39509940 C T SEC23A Missense_Mutation p.S713N 0.17 deleterious(0) probably_damaging(0.988) TCGA-BR-8059-01 14 39517897 39517897 T G SEC23A Missense_Mutation p.S566R 0.15 tolerated(0.1) benign(0.035) TCGA-BR-8059-01 14 44974445 44974445 T G FSCB Missense_Mutation p.E582D 0.20 deleterious(0.02) benign(0.295) TCGA-BR-8059-01 14 45478227 45478227 A G FAM179B Missense_Mutation p.T1006A 0.21 tolerated(0.34) benign(0.002) TCGA-BR-8059-01 14 45628389 45628389 T G FANCM Missense_Mutation p.L496R 0.24 deleterious(0) probably_damaging(0.954) TCGA-BR-8059-01 14 65261234 65261234 G T SPTB Missense_Mutation p.D582E 0.16 tolerated(1) benign(0.012) TCGA-BR-8059-01 14 69791495 69791495 G A GALNT16 Missense_Mutation p.R141H 0.14 deleterious(0) probably_damaging(1) TCGA-BR-8059-01 14 73730934 73730934 C T PAPLN Silent p.F932F 0.16 TCGA-BR-8059-01 14 75130367 75130367 A G AREL1 3'UTR 0.20 TCGA-BR-8059-01 14 92472015 92472015 G T TRIP11 Missense_Mutation p.Q769K 0.18 deleterious(0.01) benign(0.319) TCGA-BR-8059-01 14 92472025 92472025 A G TRIP11 Silent p.I765I 0.18 TCGA-BR-8059-01 14 93264325 93264325 C T GOLGA5 Silent p.H181H 0.13 TCGA-BR-8059-01 14 93483104 93483104 C A ITPK1 Missense_Mutation p.V55F 0.13 deleterious(0) probably_damaging(0.988) TCGA-BR-8059-01 15 23890249 23890249 G A MAGEL2 Missense_Mutation p.R278C 0.23 deleterious(0) probably_damaging(0.997) TCGA-BR-8059-01 15 25330357 25330357 A C SNORD116-18 5'Flank 0.15 TCGA-BR-8059-01 15 25451275 25451275 C T SNORD115-22 5'Flank 0.11 TCGA-BR-8059-01 15 25463828 25463828 A G SNORD115-27 5'Flank 0.16 TCGA-BR-8059-01 15 25616247 25616247 T A UBE3A Silent p.L361L 0.19 TCGA-BR-8059-01 15 25953353 25953353 G A ATP10A Silent p.I813I 0.23 TCGA-BR-8059-01 15 42105153 42105153 C T MAPKBP1 Silent p.L225L 0.09 TCGA-BR-8059-01 15 42434768 42434768 A C PLA2G4F Missense_Mutation p.F763V 0.16 deleterious(0) probably_damaging(1) TCGA-BR-8059-01 15 42503779 42503792 CAAAGATCAAGGAA - TMEM87A 3'UTR 0.20 TCGA-BR-8059-01 15 45392986 45392986 C - DUOX2 Frame_Shift_Del p.G991Efs*5 0.19 TCGA-BR-8059-01 15 52970292 52970292 C T FAM214A 5'UTR 0.31 TCGA-BR-8059-01 15 62214654 62214654 G A VPS13C Missense_Mutation p.S2306L 0.13 tolerated(0.14) benign(0.048) TCGA-BR-8059-01 15 64689829 64689831 AAG - TRIP4 In_Frame_Del p.K146del 0.18 TCGA-BR-8059-01 15 65157548 65157548 C - PLEKHO2 Frame_Shift_Del p.P313Hfs*9 0.11 TCGA-BR-8059-01 15 65495770 65495770 G A CILP Missense_Mutation p.R320W 0.18 deleterious(0) probably_damaging(0.999) TCGA-BR-8059-01 15 66829594 66829594 T C ZWILCH Missense_Mutation p.Y523H 0.12 deleterious(0) probably_damaging(1) TCGA-BR-8059-01 15 72552998 72552998 T C PARP6 Missense_Mutation p.M193V 0.15 tolerated(0.33) benign(0) TCGA-BR-8059-01 15 74703669 74703669 C T SEMA7A Missense_Mutation p.E536K 0.16 tolerated(0.5) benign(0.13) TCGA-BR-8059-01 15 75942116 75942116 G A SNX33 Missense_Mutation p.A225T 0.18 tolerated(0.28) benign(0.141) TCGA-BR-8059-01 15 80450431 80450431 C T FAH Silent p.G37G 0.13 TCGA-BR-8059-01 15 81201537 81201537 G A KIAA1199 Missense_Mutation p.G563S 0.20 deleterious(0.01) probably_damaging(1) TCGA-BR-8059-01 15 81650758 81650758 G A TMC3 Silent p.T195T 0.12 TCGA-BR-8059-01 15 83932879 83932879 T G BNC1 Missense_Mutation p.H375P 0.16 deleterious(0) probably_damaging(1) TCGA-BR-8059-01 15 88679770 88679770 G A NTRK3 Silent p.C231C 0.30 TCGA-BR-8059-01 16 11794372 11794372 G C TXNDC11 Missense_Mutation p.A281G 0.29 deleterious(0) probably_damaging(1) TCGA-BR-8059-01 16 1498392 1498392 G A CLCN7 Silent p.N659N 0.14 TCGA-BR-8059-01 16 15690503 15690503 G C KIAA0430 3'UTR 0.10 TCGA-BR-8059-01 16 16297439 16297439 C T ABCC6 Missense_Mutation p.G276S 0.24 tolerated(0.41) benign(0.03) TCGA-BR-8059-01 16 22137564 22137565 - GCG VWA3A In_Frame_Ins p.R534dup 0.15 TCGA-BR-8059-01 16 2239107 2239107 G A CASKIN1 Missense_Mutation p.R180W 0.21 probably_damaging(0.978) TCGA-BR-8059-01 16 2240163 2240163 G A CASKIN1 Missense_Mutation p.A52V 0.36 probably_damaging(0.971) TCGA-BR-8059-01 16 2522136 2522136 C T NTN3 Missense_Mutation p.A145V 0.17 tolerated(1) benign(0.013) TCGA-BR-8059-01 16 28109813 28109813 C T XPO6 3'UTR 0.25 TCGA-BR-8059-01 16 29845368 29845368 C T MVP Silent p.D186D 0.21 TCGA-BR-8059-01 16 30970044 30970044 T C SETD1A 5'UTR 0.14 TCGA-BR-8059-01 16 31925888 31925888 T C ZNF267 Silent p.C106C 0.13 TCGA-BR-8059-01 16 4057518 4057518 A T ADCY9 Missense_Mutation p.S579T 0.26 tolerated(0.58) benign(0.002) TCGA-BR-8059-01 16 49433085 49433085 T G C16orf78 Missense_Mutation p.L232V 0.14 deleterious(0.01) possibly_damaging(0.851) TCGA-BR-8059-01 16 50825519 50825519 A - CYLD Frame_Shift_Del p.N722Mfs*13 0.13 TCGA-BR-8059-01 16 57286242 57286244 ATG - ARL2BP 3'UTR 0.17 TCGA-BR-8059-01 16 57685389 57685389 C A GPR56 Missense_Mutation p.D114E 0.09 tolerated(0.09) benign(0.045) TCGA-BR-8059-01 16 65005503 65005503 A G CDH11 Missense_Mutation p.F541L 0.09 deleterious(0) benign(0.004) TCGA-BR-8059-01 16 67917602 67917602 T C EDC4 Silent p.S1327S 0.20 TCGA-BR-8059-01 16 69391425 69391425 T - TERF2 Frame_Shift_Del p.K447Sfs*6 0.12 TCGA-BR-8059-01 16 70916576 70916576 G A HYDIN Missense_Mutation p.P3401L 0.13 probably_damaging(0.958) TCGA-BR-8059-01 16 72131582 72131582 G A DHX38 Missense_Mutation p.R173Q 0.16 tolerated(0.19) benign(0.031) TCGA-BR-8059-01 16 72829238 72829238 C G ZFHX3 Missense_Mutation p.G2448A 0.16 unknown(0) TCGA-BR-8059-01 16 744686 744686 G C FBXL16 Missense_Mutation p.F413L 0.33 tolerated(0.05) benign(0.045) TCGA-BR-8059-01 16 77398116 77398116 A T ADAMTS18 Missense_Mutation p.V314D 0.26 deleterious(0) probably_damaging(0.995) TCGA-BR-8059-01 16 784641 784641 C - NARFL Intron 0.16 TCGA-BR-8059-01 16 83159001 83159001 A T CDH13 Missense_Mutation p.K173N 0.20 tolerated(0.34) benign(0.382) TCGA-BR-8059-01 16 84030847 84030847 C T NECAB2 Silent p.R274R 0.23 TCGA-BR-8059-01 16 86612679 86612679 C T FOXL1 Missense_Mutation p.P117L 0.22 deleterious(0) probably_damaging(1) TCGA-BR-8059-01 16 89260261 89260261 C - CDH15 Frame_Shift_Del p.Q699Sfs*51 0.24 TCGA-BR-8059-01 17 10545863 10545863 C T MYH3 Missense_Mutation p.V587M 0.04 deleterious(0) probably_damaging(0.997) TCGA-BR-8059-01 17 11827196 11827196 G T DNAH9 Nonsense_Mutation p.E3939* 0.11 TCGA-BR-8059-01 17 17723594 17723594 C T SREBF1 Silent p.P141P 0.12 TCGA-BR-8059-01 17 18220056 18220056 A C SMCR8 Missense_Mutation p.K318T 0.15 deleterious(0.03) probably_damaging(0.999) TCGA-BR-8059-01 17 21731451 21731451 G A UBBP4 Missense_Mutation p.E176K 0.16 tolerated(0.18) benign(0.064) TCGA-BR-8059-01 17 26675234 26675234 G C POLDIP2 Missense_Mutation p.P338R 0.14 tolerated(0.4) benign(0.018) TCGA-BR-8059-01 17 27442109 27442109 T A MYO18A Missense_Mutation p.K776M 0.43 deleterious(0.01) probably_damaging(0.972) TCGA-BR-8059-01 17 27934839 27934839 G A ANKRD13B Missense_Mutation p.R65H 0.09 deleterious(0) possibly_damaging(0.523) TCGA-BR-8059-01 17 27958633 27958633 G A SSH2 Silent p.S1166S 0.15 TCGA-BR-8059-01 17 30685633 30685633 C G ZNF207 Missense_Mutation p.R94G 0.19 deleterious(0.02) benign(0.433) TCGA-BR-8059-01 17 33323671 33323671 A T LIG3 Nonsense_Mutation p.R608* 0.14 TCGA-BR-8059-01 17 33338995 33338995 G A RFFL Missense_Mutation p.R362W 0.11 deleterious(0) probably_damaging(0.991) TCGA-BR-8059-01 17 3458106 3458106 G C TRPV3 Silent p.G13G 0.27 TCGA-BR-8059-01 17 38249587 38249587 G T THRA Missense_Mutation p.E475D 0.10 deleterious_low_confidence(0.02) possibly_damaging(0.636) TCGA-BR-8059-01 17 39406320 39406320 C A KRTAP9-4 Nonsense_Mutation p.C116* 0.25 TCGA-BR-8059-01 17 39551161 39551161 G A KRT31 Missense_Mutation p.R346C 0.15 deleterious(0) probably_damaging(0.927) TCGA-BR-8059-01 17 39564977 39564977 G C AC003958.2 RNA 0.20 TCGA-BR-8059-01 17 42541896 42541896 C T GPATCH8 Missense_Mutation p.R46H 0.32 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BR-8059-01 17 44248449 44248449 A T KANSL1 Nonsense_Mutation p.L354* 0.07 TCGA-BR-8059-01 17 44248642 44248642 G A KANSL1 Nonsense_Mutation p.R290* 0.06 TCGA-BR-8059-01 17 44827207 44827207 C T NSF Silent p.N659N 0.36 TCGA-BR-8059-01 17 44846085 44846085 C T WNT3 Silent p.A223A 0.30 TCGA-BR-8059-01 17 47482484 47482484 G C PHB Missense_Mutation p.T230S 0.12 tolerated(0.36) benign(0.005) TCGA-BR-8059-01 17 534812 534812 G A VPS53 Missense_Mutation p.A222V 0.10 tolerated(0.1) benign(0.116) TCGA-BR-8059-01 17 57288479 57288479 G T SMG8 Missense_Mutation p.R356M 0.11 tolerated(0.12) possibly_damaging(0.87) TCGA-BR-8059-01 17 59469373 59469373 A G BCAS3 Missense_Mutation p.N892D 0.05 deleterious_low_confidence(0.03) probably_damaging(0.952) TCGA-BR-8059-01 17 61660984 61660984 G A DCAF7 Intron 0.09 TCGA-BR-8059-01 17 61770978 61770978 C T MAP3K3 Silent p.A605A 0.20 TCGA-BR-8059-01 17 61899483 61899483 A G FTSJ3 Missense_Mutation p.F446L 0.15 tolerated(0.85) benign(0.001) TCGA-BR-8059-01 17 6350927 6350927 G A FAM64A Missense_Mutation p.A147T 0.15 tolerated(0.77) benign(0.004) TCGA-BR-8059-01 17 65924597 65924597 A T BPTF Missense_Mutation p.T1960S 0.11 benign(0.364) TCGA-BR-8059-01 17 66446986 66446986 C G WIPI1 Silent p.V72V 0.12 TCGA-BR-8059-01 17 6716254 6716254 C T TEKT1 Missense_Mutation p.A250T 0.21 tolerated(0.07) benign(0.279) TCGA-BR-8059-01 17 6716369 6716369 G A TEKT1 Silent p.S211S 0.16 TCGA-BR-8059-01 17 72518885 72518885 C A CD300LB Missense_Mutation p.A237S 0.32 deleterious_low_confidence(0.04) benign(0.223) TCGA-BR-8059-01 17 72700807 72700807 G T CD300LF Silent p.I64I 0.24 TCGA-BR-8059-01 17 73498180 73498180 C T CASKIN2 Missense_Mutation p.R992Q 0.09 deleterious(0) possibly_damaging(0.885) TCGA-BR-8059-01 17 73924169 73924169 G A FBF1 Missense_Mutation p.P115S 0.30 tolerated(0.16) benign(0.037) TCGA-BR-8059-01 17 76167865 76167867 GAC - SYNGR2 In_Frame_Del p.D176del 0.12 TCGA-BR-8059-01 17 7754383 7754383 G A KDM6B Missense_Mutation p.E1240K 0.18 possibly_damaging(0.478) TCGA-BR-8059-01 17 78069165 78069165 G A CCDC40 Missense_Mutation p.R979H 0.22 deleterious(0.02) benign(0.298) TCGA-BR-8059-01 17 78358856 78358856 G T RNF213 Silent p.L4780L 0.30 TCGA-BR-8059-01 17 7917215 7917215 C T GUCY2D Missense_Mutation p.R761W 0.21 deleterious(0) possibly_damaging(0.806) TCGA-BR-8059-01 17 79173612 79173612 C A AZI1 Missense_Mutation p.E310D 0.11 tolerated(0.06) benign(0.009) TCGA-BR-8059-01 17 79204320 79204320 C T ENTHD2 Intron 0.27 TCGA-BR-8059-01 17 79220832 79220832 C T SLC38A10 Missense_Mutation p.A699T 0.28 deleterious(0.01) possibly_damaging(0.747) TCGA-BR-8059-01 17 80285049 80285049 G T SECTM1 Missense_Mutation p.A23D 0.20 tolerated(0.08) probably_damaging(0.958) TCGA-BR-8059-01 18 10487638 10487638 A G APCDD1 Missense_Mutation p.N383S 0.08 tolerated(0.08) possibly_damaging(0.77) TCGA-BR-8059-01 18 13731490 13731490 T - RNMT 5'UTR 0.14 TCGA-BR-8059-01 18 20586340 20586340 C G RBBP8 Missense_Mutation p.Q768E 0.25 tolerated(0.12) benign(0.012) TCGA-BR-8059-01 18 2595494 2595494 C T NDC80 Silent p.D365D 0.10 TCGA-BR-8059-01 18 28979459 28979459 A T DSG4 Silent p.T410T 0.22 TCGA-BR-8059-01 18 29038540 29038540 C T DSG3 Missense_Mutation p.R117W 0.24 deleterious(0) probably_damaging(1) TCGA-BR-8059-01 18 29178579 29178579 G A TTR Missense_Mutation p.A129T 0.12 tolerated(0.21) benign(0.179) TCGA-BR-8059-01 18 29617149 29617149 C G RNF125 Missense_Mutation p.L79V 0.16 deleterious(0) possibly_damaging(0.831) TCGA-BR-8059-01 18 331763 331763 T - COLEC12 Frame_Shift_Del p.K656Nfs*4 0.18 TCGA-BR-8059-01 18 5892008 5892008 G A TMEM200C Missense_Mutation p.R19C 0.23 deleterious(0) probably_damaging(0.993) TCGA-BR-8059-01 18 65180002 65180002 T C DSEL Missense_Mutation p.K625R 0.15 tolerated(1) benign(0.001) TCGA-BR-8059-01 18 6955431 6955431 C T LAMA1 Missense_Mutation p.V2710I 0.24 tolerated(0.33) benign(0.002) TCGA-BR-8059-01 18 7024437 7024437 C T LAMA1 Missense_Mutation p.G811R 0.16 tolerated(0.4) benign(0.02) TCGA-BR-8059-01 18 7049125 7049125 G A LAMA1 Silent p.T240T 0.12 TCGA-BR-8059-01 18 9931887 9931887 A G VAPA Missense_Mutation p.T54A 0.11 deleterious(0) possibly_damaging(0.821) TCGA-BR-8059-01 19 10250779 10250779 C T DNMT1 Missense_Mutation p.R1250H 0.14 deleterious(0) probably_damaging(0.999) TCGA-BR-8059-01 19 11034007 11034007 G A YIPF2 Missense_Mutation p.A304V 0.12 tolerated(0.6) benign(0) TCGA-BR-8059-01 19 11363483 11363483 G A DOCK6 Missense_Mutation p.T95M 0.25 tolerated(0.06) benign(0.298) TCGA-BR-8059-01 19 11624073 11624073 G A ECSIT Missense_Mutation p.T179M 0.23 tolerated(0.23) possibly_damaging(0.848) TCGA-BR-8059-01 19 1231197 1231197 G - C19orf26 Frame_Shift_Del p.Q353Rfs*37 0.13 TCGA-BR-8059-01 19 14829686 14829686 G A ZNF333 Missense_Mutation p.R516Q 0.07 tolerated(0.09) possibly_damaging(0.553) TCGA-BR-8059-01 19 14877174 14877174 G A EMR2 Silent p.S169S 0.20 TCGA-BR-8059-01 19 15224418 15224418 C T SYDE1 Missense_Mutation p.P618S 0.13 tolerated(0.17) possibly_damaging(0.715) TCGA-BR-8059-01 19 15290911 15290911 C T NOTCH3 Missense_Mutation p.R1100H 0.14 tolerated(0.21) benign(0.012) TCGA-BR-8059-01 19 1615428 1615428 G A TCF3 Silent p.L560L 0.10 TCGA-BR-8059-01 19 18252811 18252811 G A MAST3 Silent p.L746L 0.38 TCGA-BR-8059-01 19 18546466 18546466 C T ISYNA1 Silent p.P387P 0.12 TCGA-BR-8059-01 19 19626213 19626213 G A TSSK6 Silent p.S8S 0.09 TCGA-BR-8059-01 19 19767528 19767528 G A ATP13A1 Nonsense_Mutation p.R342* 0.16 TCGA-BR-8059-01 19 2252963 2252963 G T JSRP1 Missense_Mutation p.P159H 0.25 deleterious(0) probably_damaging(0.979) TCGA-BR-8059-01 19 2917677 2917677 G A ZNF57 Missense_Mutation p.G353D 0.17 tolerated(0.61) probably_damaging(0.913) TCGA-BR-8059-01 19 33359480 33359480 C T SLC7A9 5'UTR 0.14 TCGA-BR-8059-01 19 33512524 33512524 G C RHPN2 Missense_Mutation p.L115V 0.11 deleterious(0.03) possibly_damaging(0.654) TCGA-BR-8059-01 19 35422801 35422801 G T ZNF30 Missense_Mutation p.A22S 0.18 tolerated(0.06) benign(0.08) TCGA-BR-8059-01 19 35617783 35617783 C T LGI4 Missense_Mutation p.R256H 0.12 tolerated(0.13) benign(0.006) TCGA-BR-8059-01 19 35941244 35941244 C G FFAR2 Missense_Mutation p.P210A 0.13 tolerated(0.05) benign(0.41) TCGA-BR-8059-01 19 36234944 36234944 G A U2AF1L4 Intron 0.17 TCGA-BR-8059-01 19 36271949 36271949 G T ARHGAP33 Missense_Mutation p.E319D 0.08 deleterious_low_confidence(0.02) benign(0.056) TCGA-BR-8059-01 19 36304127 36304127 A G PRODH2 Silent p.I19I 0.22 TCGA-BR-8059-01 19 36332672 36332672 A G NPHS1 Silent p.C920C 0.22 TCGA-BR-8059-01 19 36388655 36388655 G A NFKBID 5'UTR 0.17 TCGA-BR-8059-01 19 37310520 37310520 A G ZNF790 Silent p.T242T 0.16 TCGA-BR-8059-01 19 38134164 38134164 A G ZFP30 Splice_Site p.X79_splice 0.11 TCGA-BR-8059-01 19 38138733 38138733 A G ZFP30 5'UTR 0.11 TCGA-BR-8059-01 19 38160451 38160451 A C ZNF781 Missense_Mutation p.L200R 0.24 deleterious(0.04) possibly_damaging(0.766) TCGA-BR-8059-01 19 38572957 38572958 - G SIPA1L3 Frame_Shift_Ins p.G254Rfs*165 0.11 TCGA-BR-8059-01 19 38861356 38861356 G A CATSPERG Missense_Mutation p.G1135D 0.15 tolerated_low_confidence(0.36) probably_damaging(0.969) TCGA-BR-8059-01 19 38895639 38895639 A C FAM98C Silent p.V147V 0.29 TCGA-BR-8059-01 19 39412279 39412279 C T SARS2 Intron 0.17 TCGA-BR-8059-01 19 39819061 39819061 A G GMFG 3'UTR 0.14 TCGA-BR-8059-01 19 41114169 41114169 C G LTBP4 Nonsense_Mutation p.Y467* 0.25 TCGA-BR-8059-01 19 41892595 41892595 C T EXOSC5 Silent p.S217S 0.56 TCGA-BR-8059-01 19 42486220 42486220 C A ATP1A3 Missense_Mutation p.K357N 0.14 deleterious(0) probably_damaging(0.999) TCGA-BR-8059-01 19 43258708 43258708 T C PSG8 Silent p.S340S 0.19 TCGA-BR-8059-01 19 4409294 4409294 C T CHAF1A Silent p.N166N 0.15 TCGA-BR-8059-01 19 44174241 44174241 A G PLAUR Missense_Mutation p.L11P 0.27 tolerated(0.05) probably_damaging(0.979) TCGA-BR-8059-01 19 4538912 4538912 C A LRG1 Silent p.L28L 0.09 TCGA-BR-8059-01 19 45476381 45476381 C T CLPTM1 Nonsense_Mutation p.R75* 0.16 TCGA-BR-8059-01 19 45885799 45885799 G A PPP1R13L Missense_Mutation p.R812W 0.14 deleterious(0) probably_damaging(0.962) TCGA-BR-8059-01 19 46269299 46269299 C G SIX5 Missense_Mutation p.K560N 0.36 deleterious(0) possibly_damaging(0.617) TCGA-BR-8059-01 19 46815865 46815865 G A HIF3A Missense_Mutation p.R327Q 0.14 deleterious(0) possibly_damaging(0.756) TCGA-BR-8059-01 19 47207644 47207644 C T PRKD2 Missense_Mutation p.R224H 0.19 tolerated(0.12) benign(0.306) TCGA-BR-8059-01 19 47524418 47524418 C A NPAS1 Silent p.S38S 0.50 TCGA-BR-8059-01 19 48734252 48734252 G T CARD8 Missense_Mutation p.P185H 0.15 deleterious(0) probably_damaging(0.992) TCGA-BR-8059-01 19 50383626 50383626 C T TBC1D17 Missense_Mutation p.R96W 0.27 deleterious(0.02) possibly_damaging(0.901) TCGA-BR-8059-01 19 51629040 51629040 A C SIGLEC9 Missense_Mutation p.Q203P 0.26 deleterious(0) possibly_damaging(0.881) TCGA-BR-8059-01 19 53086002 53086002 A - ZNF701 Frame_Shift_Del p.K298Nfs*4 0.11 TCGA-BR-8059-01 19 53282080 53282080 T C ZNF600 Intron 0.12 TCGA-BR-8059-01 19 54327332 54327332 C A NLRP12 Missense_Mutation p.G33W 0.19 deleterious(0) probably_damaging(0.998) TCGA-BR-8059-01 19 54377623 54377623 C T MYADM Silent p.S280S 0.23 TCGA-BR-8059-01 19 54966670 54966670 C A LENG8 Missense_Mutation p.L317I 0.17 deleterious(0) probably_damaging(0.998) TCGA-BR-8059-01 19 55451393 55451393 A G NLRP7 Missense_Mutation p.L265P 0.16 deleterious(0) probably_damaging(0.966) TCGA-BR-8059-01 19 55718339 55718339 G A PTPRH Intron 0.08 TCGA-BR-8059-01 19 56370249 56370249 T - NLRP4 Frame_Shift_Del p.L499Wfs*5 0.16 TCGA-BR-8059-01 19 56423312 56423312 C G NLRP13 Missense_Mutation p.G624A 0.14 tolerated(0.22) benign(0.004) TCGA-BR-8059-01 19 56896485 56896485 G T ZNF582 Missense_Mutation p.Q101K 0.20 tolerated(0.2) benign(0.01) TCGA-BR-8059-01 19 57328104 57328104 T G PEG3 Missense_Mutation p.K569T 0.16 deleterious(0.01) benign(0.001) TCGA-BR-8059-01 19 57646555 57646555 T - ZIM3 Frame_Shift_Del p.I384Sfs*49 0.11 TCGA-BR-8059-01 19 57867521 57867521 A G ZNF304 Missense_Mutation p.D95G 0.16 tolerated(0.46) benign(0.003) TCGA-BR-8059-01 19 58640743 58640743 T A ZNF329 Missense_Mutation p.Q43L 0.15 tolerated(0.13) benign(0) TCGA-BR-8059-01 19 7585755 7585755 A G ZNF358 Missense_Mutation p.T543A 0.26 tolerated_low_confidence(0.06) benign(0.004) TCGA-BR-8059-01 19 8612926 8612926 G A MYO1F Silent p.A421A 0.18 TCGA-BR-8059-01 19 8932690 8932690 T A ZNF558 Missense_Mutation p.S37C 0.17 tolerated(0.08) benign(0.002) TCGA-BR-8059-01 19 9076901 9076901 A G MUC16 Silent p.H3515H 0.16 TCGA-BR-8059-01 19 9082878 9082878 A C MUC16 Silent p.T2979T 0.16 TCGA-BR-8059-01 19 9085752 9085752 A G MUC16 Silent p.S2021S 0.14 TCGA-BR-8059-01 19 9677679 9677679 T C ZNF121 Missense_Mutation p.D37G 0.21 tolerated(0.06) benign(0.021) TCGA-BR-8059-01 19 9921757 9921757 G C FBXL12 Missense_Mutation p.P266A 0.14 tolerated(0.5) benign(0.002) TCGA-BR-8059-01 1 100345508 100345508 A G AGL Silent p.Q547Q 0.13 TCGA-BR-8059-01 1 109276074 109276074 G A FNDC7 Missense_Mutation p.G687E 0.17 deleterious(0) probably_damaging(1) TCGA-BR-8059-01 1 109801344 109801344 C T CELSR2 Missense_Mutation p.P1201S 0.30 tolerated(0.68) benign(0.08) TCGA-BR-8059-01 1 110029157 110029157 C G ATXN7L2 Missense_Mutation p.H75D 0.14 deleterious(0.01) possibly_damaging(0.517) TCGA-BR-8059-01 1 110086455 110086455 G C GPR61 Missense_Mutation p.A271P 0.10 tolerated(0.24) benign(0.009) TCGA-BR-8059-01 1 114309746 114309746 T A RSBN1 Missense_Mutation p.D637V 0.19 deleterious(0) probably_damaging(0.998) TCGA-BR-8059-01 1 114309747 114309747 C T RSBN1 Missense_Mutation p.D637N 0.19 deleterious(0.02) probably_damaging(0.995) TCGA-BR-8059-01 1 116380625 116380625 G T NHLH2 Silent p.I123I 0.18 TCGA-BR-8059-01 1 117529635 117529635 G C PTGFRN 3'UTR 0.22 TCGA-BR-8059-01 1 118413059 118413059 A - GDAP2 3'UTR 0.18 TCGA-BR-8059-01 1 120278064 120278064 G T PHGDH Nonsense_Mutation p.E264* 0.30 TCGA-BR-8059-01 1 120438116 120438116 T - ADAM30 Frame_Shift_Del p.S282Vfs*3 0.17 TCGA-BR-8059-01 1 1254740 1254740 G C CPSF3L Missense_Mutation p.T128S 0.16 tolerated(0.33) possibly_damaging(0.652) TCGA-BR-8059-01 1 1268097 1268097 G A TAS1R3 Missense_Mutation p.A396T 0.18 deleterious(0) probably_damaging(0.998) TCGA-BR-8059-01 1 1322784 1322784 G A CCNL2 Missense_Mutation p.R464W 0.14 deleterious(0) possibly_damaging(0.847) TCGA-BR-8059-01 1 149783921 149783921 G C HIST2H2BF 5'UTR 0.29 TCGA-BR-8059-01 1 150040745 150040745 T G VPS45 Missense_Mutation p.L51R 0.13 deleterious(0) probably_damaging(0.998) TCGA-BR-8059-01 1 150201521 150201521 G A ANP32E Missense_Mutation p.T126I 0.41 deleterious(0.02) probably_damaging(0.996) TCGA-BR-8059-01 1 150240152 150240152 C T APH1A Missense_Mutation p.G108R 0.19 tolerated(0.26) probably_damaging(0.967) TCGA-BR-8059-01 1 151115071 151115071 G C SEMA6C Silent p.P9P 0.21 TCGA-BR-8059-01 1 151138669 151138669 A T SCNM1 Missense_Mutation p.N14I 0.24 deleterious(0) possibly_damaging(0.724) TCGA-BR-8059-01 1 151732634 151732634 T A MRPL9 Missense_Mutation p.R232S 0.15 deleterious(0) benign(0.341) TCGA-BR-8059-01 1 152192965 152192965 C T HRNR Silent p.T380T 0.11 TCGA-BR-8059-01 1 152284910 152284910 G C FLG Missense_Mutation p.Q818E 0.14 probably_damaging(0.956) TCGA-BR-8059-01 1 152327308 152327308 G C FLG2 Missense_Mutation p.S985C 0.12 unknown(0) TCGA-BR-8059-01 1 153749026 153749026 G T SLC27A3 Missense_Mutation p.A281S 0.16 tolerated(0.94) benign(0.188) TCGA-BR-8059-01 1 155252420 155252420 C T HCN3 Missense_Mutation p.T166M 0.20 tolerated(0.61) benign(0.005) TCGA-BR-8059-01 1 155264033 155264033 G A PKLR Missense_Mutation p.A370V 0.07 deleterious(0) probably_damaging(0.999) TCGA-BR-8059-01 1 158059568 158059568 T C KIRREL Missense_Mutation p.V411A 0.15 deleterious(0) possibly_damaging(0.777) TCGA-BR-8059-01 1 158226016 158226016 G A CD1A Missense_Mutation p.C183Y 0.16 deleterious(0) possibly_damaging(0.899) TCGA-BR-8059-01 1 158368498 158368498 G A OR10T2 Silent p.G253G 0.21 TCGA-BR-8059-01 1 160389262 160389262 G A VANGL2 Silent p.S221S 0.07 TCGA-BR-8059-01 1 161137804 161137804 C - PPOX Frame_Shift_Del p.F122Sfs*10 0.13 TCGA-BR-8059-01 1 161682971 161682971 C A FCRLA Missense_Mutation p.P317H 0.14 deleterious(0) possibly_damaging(0.897) TCGA-BR-8059-01 1 161789511 161789511 G T ATF6 Missense_Mutation p.G333V 0.15 deleterious(0.01) probably_damaging(0.993) TCGA-BR-8059-01 1 162569119 162569119 A G UAP1 Missense_Mutation p.N495S 0.12 tolerated(0.38) benign(0.001) TCGA-BR-8059-01 1 16257086 16257086 G A SPEN Missense_Mutation p.A1451T 0.07 probably_damaging(0.995) TCGA-BR-8059-01 1 166039482 166039482 T G FAM78B Missense_Mutation p.K261T 0.11 deleterious(0) benign(0.168) TCGA-BR-8059-01 1 169500218 169500218 C T F5 Missense_Mutation p.A1672T 0.07 deleterious(0.01) probably_damaging(0.972) TCGA-BR-8059-01 1 169822809 169822809 A - C1orf112 3'UTR 0.09 TCGA-BR-8059-01 1 169823472 169823472 T - SCYL3 Frame_Shift_Del p.K703Rfs*7 0.19 TCGA-BR-8059-01 1 186277935 186277936 - A PRG4 Frame_Shift_Ins p.P1031Tfs*12 0.18 TCGA-BR-8059-01 1 186282787 186282787 A - TPR 3'UTR 0.15 TCGA-BR-8059-01 1 186300651 186300651 A G TPR Silent p.D1889D 0.13 TCGA-BR-8059-01 1 193045113 193045117 AGAAG CT TROVE2 Nonsense_Mutation p.E249_E250delins* 0.16 TCGA-BR-8059-01 1 19439224 19439224 G A UBR4 Silent p.G3865G 0.16 TCGA-BR-8059-01 1 197404057 197404057 A C CRB1 Missense_Mutation p.S1022R 0.22 tolerated(0.08) benign(0.026) TCGA-BR-8059-01 1 200978019 200978019 C G KIF21B Missense_Mutation p.E109Q 0.14 tolerated(0.09) probably_damaging(0.992) TCGA-BR-8059-01 1 20249189 20249189 T G PLA2G2E Missense_Mutation p.K34Q 0.12 deleterious(0.02) benign(0.305) TCGA-BR-8059-01 1 204226851 204226851 G - PLEKHA6 Frame_Shift_Del p.P385Rfs*115 0.33 TCGA-BR-8059-01 1 205312566 205312566 G T KLHDC8A Missense_Mutation p.A56D 0.11 tolerated(0.16) possibly_damaging(0.69) TCGA-BR-8059-01 1 205892549 205892549 C T SLC26A9 Missense_Mutation p.D525N 0.11 deleterious(0) benign(0.044) TCGA-BR-8059-01 1 206241563 206241563 C G C1orf186 Missense_Mutation p.D76H 0.33 tolerated(0.06) benign(0.35) TCGA-BR-8059-01 1 207198323 207198323 C A C1orf116 Missense_Mutation p.E64D 0.33 deleterious(0) probably_damaging(0.998) TCGA-BR-8059-01 1 210415046 210415046 G A SERTAD4 Missense_Mutation p.M145I 0.10 deleterious(0.02) benign(0.058) TCGA-BR-8059-01 1 211654657 211654657 G A RD3 Missense_Mutation p.T34M 0.13 deleterious(0.02) benign(0.172) TCGA-BR-8059-01 1 211749121 211749121 G A SLC30A1 Missense_Mutation p.A378V 0.09 deleterious(0) possibly_damaging(0.672) TCGA-BR-8059-01 1 212534123 212534123 T C PPP2R5A 3'UTR 0.14 TCGA-BR-8059-01 1 214588019 214588019 C T PTPN14 Missense_Mutation p.R132Q 0.19 tolerated(0.11) benign(0.021) TCGA-BR-8059-01 1 214705925 214705925 G A PTPN14 Intron 0.08 TCGA-BR-8059-01 1 214791998 214791999 - T CENPF Frame_Shift_Ins p.T150Yfs*11 0.11 TCGA-BR-8059-01 1 214818924 214818924 T C CENPF Missense_Mutation p.V2004A 0.10 benign(0.14) TCGA-BR-8059-01 1 215793628 215793628 A G KCTD3 Missense_Mutation p.I706V 0.10 tolerated_low_confidence(1) benign(0) TCGA-BR-8059-01 1 215793684 215793684 T A KCTD3 Missense_Mutation p.S724R 0.16 tolerated_low_confidence(0.09) benign(0.043) TCGA-BR-8059-01 1 215901410 215901410 T C USH2A Missense_Mutation p.T4010A 0.19 benign(0.047) TCGA-BR-8059-01 1 216246578 216246578 C T USH2A Silent p.V1879V 0.21 TCGA-BR-8059-01 1 21800060 21800060 G A NBPF3 Missense_Mutation p.A308T 0.17 tolerated(0.24) possibly_damaging(0.811) TCGA-BR-8059-01 1 218036114 218036114 A G SPATA17 Splice_Site p.X336_splice 0.25 TCGA-BR-8059-01 1 22216485 22216485 C T HSPG2 Missense_Mutation p.R188H 0.14 benign(0.028) TCGA-BR-8059-01 1 223177310 223177310 A G DISP1 Silent p.K857K 0.17 TCGA-BR-8059-01 1 22418102 22418102 G A CDC42 3'UTR 0.17 TCGA-BR-8059-01 1 228346215 228346215 C T GJC2 Silent p.H252H 0.09 TCGA-BR-8059-01 1 228646133 228646133 G A HIST3H2BB Silent p.L101L 0.12 TCGA-BR-8059-01 1 229580678 229580678 T C NUP133 Missense_Mutation p.Q1106R 0.17 tolerated(0.19) benign(0.067) TCGA-BR-8059-01 1 229593999 229593999 G C NUP133 Nonsense_Mutation p.Y963* 0.27 TCGA-BR-8059-01 1 237872259 237872259 T C RYR2 Missense_Mutation p.S3335P 0.11 benign(0.078) TCGA-BR-8059-01 1 242015657 242015657 C T EXO1 Silent p.L75L 0.14 TCGA-BR-8059-01 1 243493858 243493858 A C SDCCAG8 Missense_Mutation p.D362A 0.10 deleterious(0.05) benign(0.097) TCGA-BR-8059-01 1 24389613 24389613 T A MYOM3 Intron 0.19 TCGA-BR-8059-01 1 245852058 245852058 G A KIF26B Missense_Mutation p.V1925M 0.12 tolerated(0.06) unknown(0) TCGA-BR-8059-01 1 246810592 246810592 G A CNST Silent p.L363L 0.10 TCGA-BR-8059-01 1 247319909 247319909 T - ZNF124 Frame_Shift_Del p.T277Lfs*31 0.12 TCGA-BR-8059-01 1 247902152 247902152 C G OR14K1 Missense_Mutation p.S79C 0.09 deleterious(0.03) benign(0.071) TCGA-BR-8059-01 1 248617019 248617019 G T OR2T2 Silent p.G307G 0.29 TCGA-BR-8059-01 1 249150550 249150564 TCATTGTCCTCTTCT - ZNF692 In_Frame_Del p.E199_N203del 0.17 TCGA-BR-8059-01 1 26189365 26189365 C T PAQR7 Silent p.T322T 0.12 TCGA-BR-8059-01 1 27099914 27099914 G A ARID1A Missense_Mutation p.G1265S 0.12 unknown(0) TCGA-BR-8059-01 1 27180234 27180234 G T ZDHHC18 Missense_Mutation p.G356V 0.08 deleterious(0) probably_damaging(0.988) TCGA-BR-8059-01 1 27679867 27679867 C T SYTL1 Silent p.Y479Y 0.24 TCGA-BR-8059-01 1 27876869 27876869 T - AHDC1 Frame_Shift_Del p.K586Nfs*37 0.24 TCGA-BR-8059-01 1 28537141 28537141 A G DNAJC8 Missense_Mutation p.I82T 0.18 deleterious(0.03) possibly_damaging(0.721) TCGA-BR-8059-01 1 32792620 32792620 G A HDAC1 Missense_Mutation p.E146K 0.14 deleterious(0.03) benign(0.351) TCGA-BR-8059-01 1 35250931 35250931 T A GJB3 Missense_Mutation p.F190I 0.12 tolerated(0.07) probably_damaging(0.999) TCGA-BR-8059-01 1 36306953 36306953 C T AGO4 Nonsense_Mutation p.Q638* 0.23 TCGA-BR-8059-01 1 36558733 36558733 G A ADPRHL2 Missense_Mutation p.A280T 0.21 deleterious(0) probably_damaging(0.999) TCGA-BR-8059-01 1 38187344 38187344 C T EPHA10 Missense_Mutation p.V712I 0.13 deleterious(0) probably_damaging(0.988) TCGA-BR-8059-01 1 41608726 41608726 G T SCMH1 Missense_Mutation p.P69H 0.14 deleterious(0) probably_damaging(1) TCGA-BR-8059-01 1 42657010 42657010 C A FOXJ3 Missense_Mutation p.A439S 0.14 tolerated(0.41) benign(0.01) TCGA-BR-8059-01 1 43204117 43204117 G A CLDN19 Silent p.A121A 0.11 TCGA-BR-8059-01 1 43775113 43775113 C T TIE1 Missense_Mutation p.R415C 0.15 deleterious(0.01) possibly_damaging(0.51) TCGA-BR-8059-01 1 45810622 45810622 C T TESK2 Missense_Mutation p.A536T 0.16 tolerated_low_confidence(0.39) benign(0.001) TCGA-BR-8059-01 1 47144205 47144205 G T EFCAB14 Missense_Mutation p.S472R 0.10 tolerated(0.07) benign(0.005) TCGA-BR-8059-01 1 47279221 47279221 C T CYP4B1 Missense_Mutation p.A188V 0.14 deleterious(0.01) benign(0.087) TCGA-BR-8059-01 1 47607809 47607809 A C CYP4A22 Missense_Mutation p.T138P 0.18 deleterious(0.04) benign(0.049) TCGA-BR-8059-01 1 54607090 54607090 G C CDCP2 Silent p.V148V 0.26 TCGA-BR-8059-01 1 63789265 63789265 G A FOXD3 Missense_Mutation p.R179K 0.14 tolerated(0.06) benign(0.111) TCGA-BR-8059-01 1 65330630 65330630 T - JAK1 Frame_Shift_Del p.N339Ifs*3 0.17 TCGA-BR-8059-01 1 6585790 6585790 A - NOL9 3'UTR 0.28 TCGA-BR-8059-01 1 67154912 67154912 C A SGIP1 Missense_Mutation p.P466Q 0.12 deleterious(0.01) probably_damaging(0.987) TCGA-BR-8059-01 1 67558669 67558669 T C C1orf141 3'UTR 0.12 TCGA-BR-8059-01 1 68512338 68512338 T C DIRAS3 Missense_Mutation p.M215V 0.21 tolerated(0.57) benign(0.001) TCGA-BR-8059-01 1 90180340 90180340 A - LRRC8C Frame_Shift_Del p.N739Tfs*19 0.09 TCGA-BR-8059-01 1 93682304 93682304 G T CCDC18 Splice_Site p.X663_splice 0.17 TCGA-BR-8059-01 20 18511371 18511371 A G SEC23B Missense_Mutation p.Q386R 0.18 deleterious(0.05) benign(0.329) TCGA-BR-8059-01 20 25457060 25457060 C T NINL Missense_Mutation p.R956Q 0.28 tolerated(1) benign(0.019) TCGA-BR-8059-01 20 25485604 25485604 C - NINL Frame_Shift_Del p.V210Wfs*7 0.15 TCGA-BR-8059-01 20 31022374 31022374 G A ASXL1 Missense_Mutation p.R620H 0.08 deleterious(0.02) benign(0.013) TCGA-BR-8059-01 20 3209270 3209270 G A SLC4A11 Missense_Mutation p.P802L 0.11 deleterious(0.03) possibly_damaging(0.897) TCGA-BR-8059-01 20 33530446 33530446 A C GSS Intron 0.14 TCGA-BR-8059-01 20 35696449 35696449 A - RBL1 Frame_Shift_Del p.L144* 0.09 TCGA-BR-8059-01 20 36361416 36361416 A - CTNNBL1 Frame_Shift_Del p.R58Gfs*25 0.27 TCGA-BR-8059-01 20 37580587 37580587 G A FAM83D Silent p.E424E 0.10 TCGA-BR-8059-01 20 41306787 41306787 G T PTPRT Missense_Mutation p.P291H 0.15 deleterious(0) probably_damaging(1) TCGA-BR-8059-01 20 42343837 42343837 T C MYBL2 Silent p.L630L 0.12 TCGA-BR-8059-01 20 42354852 42354853 - T GTSF1L 3'UTR 0.11 TCGA-BR-8059-01 20 42355392 42355392 G C GTSF1L 5'UTR 0.13 TCGA-BR-8059-01 20 43385563 43385563 C G RIMS4 Missense_Mutation p.E190D 0.17 deleterious_low_confidence(0.03) probably_damaging(0.971) TCGA-BR-8059-01 20 43932985 43932985 C T MATN4 Missense_Mutation p.A176T 0.09 possibly_damaging(0.767) TCGA-BR-8059-01 20 44047544 44047544 G A PIGT Missense_Mutation p.A140T 0.16 deleterious(0) probably_damaging(0.987) TCGA-BR-8059-01 20 44511929 44511929 G C ZSWIM1 Missense_Mutation p.W233S 0.16 deleterious(0) possibly_damaging(0.747) TCGA-BR-8059-01 20 46365657 46365657 G A SULF2 Missense_Mutation p.R69C 0.11 deleterious(0) probably_damaging(0.977) TCGA-BR-8059-01 20 55027385 55027385 T C CASS4 Missense_Mutation p.S385P 0.14 tolerated(0.26) benign(0.049) TCGA-BR-8059-01 20 55211736 55211736 A G TFAP2C Silent p.A331A 0.18 TCGA-BR-8059-01 20 57766555 57766555 A C ZNF831 Missense_Mutation p.K161Q 0.12 deleterious(0) probably_damaging(0.999) TCGA-BR-8059-01 20 60733969 60733969 G C SS18L1 Intron 0.21 TCGA-BR-8059-01 21 15870763 15870763 T G SAMSN1 Missense_Mutation p.I375L 0.24 tolerated(0.26) benign(0.001) TCGA-BR-8059-01 21 19666644 19666644 C A TMPRSS15 Missense_Mutation p.C810F 0.26 deleterious(0) probably_damaging(1) TCGA-BR-8059-01 21 30380401 30380401 C A RWDD2B Missense_Mutation p.D136Y 0.24 deleterious(0) probably_damaging(0.973) TCGA-BR-8059-01 21 31654507 31654507 G A KRTAP24-1 Silent p.S248S 0.07 TCGA-BR-8059-01 21 32492734 32492734 A G TIAM1 Silent p.V1576V 0.26 TCGA-BR-8059-01 22 19029346 19029346 C T DGCR2 Missense_Mutation p.R378H 0.18 deleterious(0.04) benign(0.418) TCGA-BR-8059-01 22 19363188 19363188 C A HIRA Missense_Mutation p.A581S 0.11 tolerated(0.73) benign(0.003) TCGA-BR-8059-01 22 19766785 19766785 C A GNB1L 3'Flank 0.23 TCGA-BR-8059-01 22 20130522 20130522 C G ZDHHC8 Missense_Mutation p.P457A 0.29 tolerated(0.3) possibly_damaging(0.631) TCGA-BR-8059-01 22 20230373 20230373 G A RTN4R Nonsense_Mutation p.R95* 0.12 TCGA-BR-8059-01 22 21377428 21377428 C A P2RX6 Silent p.A193A 0.16 TCGA-BR-8059-01 22 21988490 21988490 C A CCDC116 Missense_Mutation p.D84E 0.17 tolerated(0.27) possibly_damaging(0.505) TCGA-BR-8059-01 22 22843016 22843016 T C ZNF280B Silent p.P236P 0.18 TCGA-BR-8059-01 22 23090355 23090355 A G IGLV3-16 Silent p.A98A 0.10 TCGA-BR-8059-01 22 23465440 23465440 A T GNAZ Missense_Mutation p.Y297F 0.21 tolerated(0.27) probably_damaging(0.958) TCGA-BR-8059-01 22 23981009 23981009 G A GUSBP11 RNA 0.12 TCGA-BR-8059-01 22 25024357 25024357 T C GGT1 Splice_Site p.X521_splice 0.12 TCGA-BR-8059-01 22 25603126 25603126 C T CRYBB3 Missense_Mutation p.R195C 0.15 tolerated(0.07) possibly_damaging(0.686) TCGA-BR-8059-01 22 28193409 28193409 C T MN1 Silent p.V1041V 0.17 TCGA-BR-8059-01 22 30662777 30662777 C A OSM Silent p.L4L 0.11 TCGA-BR-8059-01 22 35661038 35661039 TG - HMGXB4 Frame_Shift_Del p.V220Efs*11 0.12 TCGA-BR-8059-01 22 35782986 35782986 C A HMOX1 Silent p.A151A 0.07 TCGA-BR-8059-01 22 37578760 37578760 G C C1QTNF6 Missense_Mutation p.P102R 0.25 tolerated(1) benign(0.006) TCGA-BR-8059-01 22 38038872 38038872 G A SH3BP1 Intron 0.17 TCGA-BR-8059-01 22 38202023 38202023 A - H1F0 Frame_Shift_Del p.K159Nfs*21 0.14 TCGA-BR-8059-01 22 38370125 38370125 C T SOX10 Missense_Mutation p.G260R 0.12 deleterious(0.04) probably_damaging(0.946) TCGA-BR-8059-01 22 38373944 38373944 G A SOX10 Silent p.S209S 0.19 TCGA-BR-8059-01 22 40417839 40417839 T A FAM83F Missense_Mutation p.L442H 0.23 tolerated_low_confidence(0.1) possibly_damaging(0.711) TCGA-BR-8059-01 22 42423016 42423016 C - WBP2NL Frame_Shift_Del p.P255Hfs*63 0.21 TCGA-BR-8059-01 22 43280459 43280459 G A PACSIN2 Missense_Mutation p.R240C 0.13 deleterious(0) probably_damaging(1) TCGA-BR-8059-01 22 43569737 43569737 C T TTLL12 Missense_Mutation p.R442Q 0.10 tolerated(0.2) benign(0.283) TCGA-BR-8059-01 22 45755702 45755702 C A SMC1B Missense_Mutation p.D949Y 0.29 deleterious(0) probably_damaging(0.924) TCGA-BR-8059-01 22 46704360 46704360 C T GTSE1 Silent p.A94A 0.19 TCGA-BR-8059-01 22 46931942 46931942 G A CELSR1 Missense_Mutation p.R376C 0.19 deleterious(0) probably_damaging(0.997) TCGA-BR-8059-01 22 50530569 50530569 A G MOV10L1 Silent p.A79A 0.18 TCGA-BR-8059-01 22 50967983 50967983 C T TYMP Silent p.A52A 0.16 TCGA-BR-8059-01 2 103095359 103095359 G C SLC9A4 Silent p.V106V 0.13 TCGA-BR-8059-01 2 103281692 103281692 C T SLC9A2 Missense_Mutation p.A296V 0.06 deleterious(0) probably_damaging(0.984) TCGA-BR-8059-01 2 113953852 113953852 G A PSD4 Missense_Mutation p.R785Q 0.21 deleterious(0) probably_damaging(1) TCGA-BR-8059-01 2 1251209 1251209 T C SNTG2 Silent p.T333T 0.09 TCGA-BR-8059-01 2 128015106 128015106 T C ERCC3 3'UTR 0.15 TCGA-BR-8059-01 2 130738406 130738406 T C RAB6C Silent p.L240L 0.13 TCGA-BR-8059-01 2 135756477 135756477 C T MAP3K19 Silent p.K135K 0.12 TCGA-BR-8059-01 2 137872832 137872832 A T THSD7B Silent p.V446V 0.15 TCGA-BR-8059-01 2 141260572 141260572 A T LRP1B Missense_Mutation p.H2874Q 0.14 possibly_damaging(0.537) TCGA-BR-8059-01 2 145156151 145156151 T A ZEB2 Missense_Mutation p.E868V 0.17 deleterious(0) benign(0.107) TCGA-BR-8059-01 2 145156152 145156152 C A ZEB2 Nonsense_Mutation p.E868* 0.17 TCGA-BR-8059-01 2 148683727 148683728 - G ACVR2A Frame_Shift_Ins p.A449Gfs*8 0.21 TCGA-BR-8059-01 2 149240713 149240713 G A MBD5 Silent p.A851A 0.11 TCGA-BR-8059-01 2 152127154 152127154 A G NMI 3'UTR 0.13 TCGA-BR-8059-01 2 152293810 152293810 T C RIF1 Silent p.N476N 0.14 TCGA-BR-8059-01 2 152342222 152342222 A G NEB 3'UTR 0.14 TCGA-BR-8059-01 2 157370007 157370007 C T GPD2 Silent p.D220D 0.13 TCGA-BR-8059-01 2 160873180 160873181 - A PLA2R1 Frame_Shift_Ins p.Y499Lfs*4 0.14 TCGA-BR-8059-01 2 162227710 162227710 C - PSMD14 Frame_Shift_Del p.H113Qfs*39 0.14 TCGA-BR-8059-01 2 165548759 165548759 G A COBLL1 Missense_Mutation p.S1129L 0.15 deleterious(0) possibly_damaging(0.907) TCGA-BR-8059-01 2 166767931 166767931 A G TTC21B Silent p.N789N 0.12 TCGA-BR-8059-01 2 168104263 168104263 G A XIRP2 Missense_Mutation p.V2121I 0.14 benign(0.009) TCGA-BR-8059-01 2 169826018 169826018 G A ABCB11 Missense_Mutation p.S618F 0.11 deleterious(0) probably_damaging(0.921) TCGA-BR-8059-01 2 170083054 170083054 C G LRP2 Missense_Mutation p.G1758R 0.10 probably_damaging(1) TCGA-BR-8059-01 2 171573025 171573043 CGTCCTTCGGGGCTGCGCA - SP5 Frame_Shift_Del p.G106Pfs*202 0.21 TCGA-BR-8059-01 2 179411492 179411492 G A TTN Missense_Mutation p.R31555C 0.13 TCGA-BR-8059-01 2 179415859 179415859 G A TTN Missense_Mutation p.R30467C 0.20 TCGA-BR-8059-01 2 179440722 179440722 G A TTN Silent p.T23379T 0.17 TCGA-BR-8059-01 2 179454276 179454276 T A TTN Missense_Mutation p.T20726S 0.23 TCGA-BR-8059-01 2 179481230 179481230 T G TTN Missense_Mutation p.E16096D 0.14 TCGA-BR-8059-01 2 179592042 179592042 A G TTN Missense_Mutation p.S6684P 0.21 TCGA-BR-8059-01 2 179596518 179596518 T C TTN Missense_Mutation p.Q5695R 0.19 TCGA-BR-8059-01 2 179641449 179641459 AAGTCTTAAGG - TTN Frame_Shift_Del p.S1711* 0.28 TCGA-BR-8059-01 2 185800571 185800571 G T ZNF804A Nonsense_Mutation p.E150* 0.20 TCGA-BR-8059-01 2 190602494 190602494 T C ANKAR Missense_Mutation p.I1170T 0.16 tolerated(0.43) benign(0.001) TCGA-BR-8059-01 2 197157452 197157452 T C HECW2 Missense_Mutation p.N946S 0.17 tolerated(1) benign(0.003) TCGA-BR-8059-01 2 201845947 201845947 T A FAM126B 3'UTR 0.16 TCGA-BR-8059-01 2 202137437 202137438 TC - CASP8 Frame_Shift_Del p.A224Pfs*14 0.10 TCGA-BR-8059-01 2 210559927 210559927 C T MAP2 Silent p.S1011S 0.19 TCGA-BR-8059-01 2 210560961 210560961 G T MAP2 Missense_Mutation p.R1356I 0.12 deleterious(0) probably_damaging(0.945) TCGA-BR-8059-01 2 212578277 212578277 G A ERBB4 Missense_Mutation p.T327I 0.09 tolerated(0.13) benign(0.373) TCGA-BR-8059-01 2 215593476 215593476 C T BARD1 Missense_Mutation p.G753D 0.12 deleterious(0) probably_damaging(1) TCGA-BR-8059-01 2 215896544 215896544 C G ABCA12 Splice_Site p.X354_splice 0.15 TCGA-BR-8059-01 2 219222808 219222808 T C C2orf62 Missense_Mutation p.F123S 0.15 tolerated(0.07) probably_damaging(0.985) TCGA-BR-8059-01 2 219480484 219480484 C T PLCD4 Nonsense_Mutation p.Q8* 0.16 TCGA-BR-8059-01 2 219509363 219509363 C A ZNF142 Missense_Mutation p.D626Y 0.09 tolerated(0.71) possibly_damaging(0.861) TCGA-BR-8059-01 2 220412635 220412635 G A TMEM198 Missense_Mutation p.A192T 0.23 deleterious(0.02) possibly_damaging(0.798) TCGA-BR-8059-01 2 223086046 223086046 C T PAX3 Missense_Mutation p.A285T 0.19 tolerated(0.09) benign(0.318) TCGA-BR-8059-01 2 223339343 223339343 T G SGPP2 Missense_Mutation p.F92L 0.16 tolerated(0.14) benign(0.011) TCGA-BR-8059-01 2 234627977 234627977 T - UGT1A4 Frame_Shift_Del p.W173Gfs*8 0.20 TCGA-BR-8059-01 2 238280823 238280823 G C COL6A3 Missense_Mutation p.D1279E 0.38 probably_damaging(0.983) TCGA-BR-8059-01 2 24928069 24928069 A C NCOA1 Missense_Mutation p.Q355P 0.18 tolerated(0.68) benign(0.17) TCGA-BR-8059-01 2 26864136 26864136 T A CIB4 Missense_Mutation p.E16V 0.19 deleterious(0) benign(0.334) TCGA-BR-8059-01 2 29379233 29379233 A - CLIP4 Frame_Shift_Del p.D396Ifs*19 0.19 TCGA-BR-8059-01 2 3691583 3691583 G A COLEC11 Missense_Mutation p.G245S 0.07 deleterious(0.04) probably_damaging(0.956) TCGA-BR-8059-01 2 39411785 39411785 T C CDKL4 Missense_Mutation p.T247A 0.13 tolerated(0.06) benign(0.309) TCGA-BR-8059-01 2 54483113 54483113 A G TSPYL6 Missense_Mutation p.V59A 0.17 tolerated(0.63) benign(0.022) TCGA-BR-8059-01 2 62449455 62449456 - A B3GNT2 Frame_Shift_Ins p.N36Kfs*64 0.16 TCGA-BR-8059-01 2 74746867 74746867 G C DQX1 Missense_Mutation p.A541G 0.19 tolerated(0.24) benign(0.002) TCGA-BR-8059-01 2 77746530 77746530 G A LRRTM4 Silent p.G155G 0.16 TCGA-BR-8059-01 2 79312400 79312400 T G REG1B Missense_Mutation p.K148T 0.18 deleterious(0.02) possibly_damaging(0.758) TCGA-BR-8059-01 2 86315779 86315779 C T POLR1A Missense_Mutation p.V214I 0.21 tolerated(0.49) benign(0.013) TCGA-BR-8059-01 2 88879049 88879049 G A EIF2AK3 Missense_Mutation p.R625C 0.05 tolerated(0.1) benign(0.104) TCGA-BR-8059-01 2 9666322 9666322 G A ADAM17 Missense_Mutation p.T224M 0.22 deleterious(0.02) probably_damaging(0.997) TCGA-BR-8059-01 3 111261000 111261000 T - CD96 5'UTR 0.24 TCGA-BR-8059-01 3 111632518 111632518 G A PHLDB2 Missense_Mutation p.S563N 0.21 tolerated(0.55) benign(0.002) TCGA-BR-8059-01 3 119531555 119531555 G A NR1I2 Missense_Mutation p.G220D 0.08 tolerated(0.17) benign(0.006) TCGA-BR-8059-01 3 122004079 122004079 T A CASR 3'UTR 0.14 TCGA-BR-8059-01 3 122928161 122928161 T C SEC22A Missense_Mutation p.C33R 0.09 tolerated(0.31) benign(0.091) TCGA-BR-8059-01 3 12641686 12641686 C T RAF1 Missense_Mutation p.A319T 0.13 tolerated(0.23) benign(0.196) TCGA-BR-8059-01 3 134267988 134267988 T C CEP63 Silent p.H384H 0.22 TCGA-BR-8059-01 3 142259852 142259852 T A ATR Missense_Mutation p.M1159L 0.31 tolerated(0.09) probably_damaging(0.997) TCGA-BR-8059-01 3 142840454 142840454 G A CHST2 Missense_Mutation p.A266T 0.28 tolerated(0.09) possibly_damaging(0.761) TCGA-BR-8059-01 3 15062405 15062406 - A NR2C2 Frame_Shift_Ins p.C196Mfs*14 0.20 TCGA-BR-8059-01 3 151160982 151160982 A G IGSF10 Missense_Mutation p.I1918T 0.29 deleterious(0) possibly_damaging(0.838) TCGA-BR-8059-01 3 155271897 155271897 C T PLCH1 Silent p.E374E 0.18 TCGA-BR-8059-01 3 158545116 158545116 T C MFSD1 Missense_Mutation p.S511P 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.464) TCGA-BR-8059-01 3 159605580 159605595 GCAAAAGAAATTGCAA - IQCJ-SCHIP1 Frame_Shift_Del p.Q437Lfs*18 0.12 TCGA-BR-8059-01 3 167218047 167218047 C G WDR49 Silent p.L623L 0.19 TCGA-BR-8059-01 3 169899475 169899475 C T PHC3 Intron 0.07 TCGA-BR-8059-01 3 172166108 172166108 G A GHSR Silent p.D32D 0.10 TCGA-BR-8059-01 3 173997321 173997321 C A NLGN1 Silent p.P510P 0.12 TCGA-BR-8059-01 3 173998407 173998407 G C NLGN1 Missense_Mutation p.E596Q 0.15 tolerated(0.06) probably_damaging(0.947) TCGA-BR-8059-01 3 180328072 180328073 - A TTC14 Frame_Shift_Ins p.Y688Ifs*8 0.16 TCGA-BR-8059-01 3 184052752 184052752 C G EIF4G1 3'UTR 0.16 TCGA-BR-8059-01 3 184295229 184295229 G T EPHB3 Missense_Mutation p.D485Y 0.15 deleterious(0) probably_damaging(0.992) TCGA-BR-8059-01 3 193335014 193335014 G C OPA1 Missense_Mutation p.A166P 0.23 tolerated(0.29) benign(0.094) TCGA-BR-8059-01 3 194062035 194062035 C - CPN2 Frame_Shift_Del p.G466Afs*37 0.09 TCGA-BR-8059-01 3 33194483 33194483 G A SUSD5 Silent p.P547P 0.26 TCGA-BR-8059-01 3 46586647 46586647 C T LRRC2 Silent p.R74R 0.22 TCGA-BR-8059-01 3 47045860 47045860 C A NBEAL2 Missense_Mutation p.L2059M 0.16 deleterious(0) probably_damaging(0.993) TCGA-BR-8059-01 3 48691836 48691836 G A CELSR3 Missense_Mutation p.P1680S 0.26 deleterious(0.04) probably_damaging(0.968) TCGA-BR-8059-01 3 48696932 48696932 G T CELSR3 Missense_Mutation p.P1046T 0.19 tolerated(0.09) probably_damaging(0.938) TCGA-BR-8059-01 3 49740928 49740928 G T RNF123 Missense_Mutation p.G607C 0.10 deleterious(0) probably_damaging(0.99) TCGA-BR-8059-01 3 51749114 51749114 G A GRM2 Missense_Mutation p.R442H 0.21 tolerated(0.12) benign(0.035) TCGA-BR-8059-01 3 51981822 51981822 G C PARP3 Missense_Mutation p.R455T 0.12 tolerated(0.07) benign(0.035) TCGA-BR-8059-01 3 51992870 51992870 G A PCBP4 Missense_Mutation p.R287W 0.14 deleterious(0) probably_damaging(1) TCGA-BR-8059-01 3 52292655 52292656 CT - WDR82 Frame_Shift_Del p.S270Rfs*10 0.12 TCGA-BR-8059-01 3 52356427 52356427 G A DNAH1 Intron 0.20 TCGA-BR-8059-01 3 52562296 52562296 A T NT5DC2 Missense_Mutation p.F225Y 0.12 deleterious(0.01) probably_damaging(0.955) TCGA-BR-8059-01 3 58089788 58089788 G - FLNB Frame_Shift_Del p.G531Dfs*42 0.14 TCGA-BR-8059-01 3 74548856 74548856 T - CNTN3 Frame_Shift_Del p.I46* 0.14 TCGA-BR-8059-01 3 9027389 9027389 G A SRGAP3 Silent p.T1038T 0.26 TCGA-BR-8059-01 3 9074409 9074409 C A SRGAP3 Missense_Mutation p.Q488H 0.28 tolerated(0.19) benign(0.003) TCGA-BR-8059-01 3 9594221 9594221 C T LHFPL4 Missense_Mutation p.G48D 0.17 deleterious(0) probably_damaging(1) TCGA-BR-8059-01 3 9831526 9831526 G C TADA3 Missense_Mutation p.A110G 0.16 tolerated(1) benign(0) TCGA-BR-8059-01 3 9982881 9982881 A G CRELD1 Missense_Mutation p.K242E 0.16 tolerated(0.33) benign(0.355) TCGA-BR-8059-01 3 99895194 99895194 A G CMSS1 Missense_Mutation p.K231E 0.15 deleterious(0.01) possibly_damaging(0.656) TCGA-BR-8059-01 4 106155934 106155934 A C TET2 Missense_Mutation p.T279P 0.10 tolerated(0.05) benign(0.086) TCGA-BR-8059-01 4 106616707 106616707 A C INTS12 Missense_Mutation p.V92G 0.23 tolerated(0.39) benign(0.021) TCGA-BR-8059-01 4 128564847 128564847 G A INTU Silent p.K106K 0.22 TCGA-BR-8059-01 4 138451552 138451552 A C PCDH18 Missense_Mutation p.L564R 0.20 deleterious(0) probably_damaging(0.953) TCGA-BR-8059-01 4 146697023 146697023 G C ZNF827 Missense_Mutation p.L871V 0.10 deleterious(0.02) probably_damaging(0.998) TCGA-BR-8059-01 4 151849711 151849711 A T LRBA Missense_Mutation p.L169Q 0.18 deleterious(0) possibly_damaging(0.85) TCGA-BR-8059-01 4 153896551 153896551 C T FHDC1 Missense_Mutation p.P703L 0.17 tolerated(0.12) possibly_damaging(0.483) TCGA-BR-8059-01 4 155461762 155461762 C T PLRG1 Missense_Mutation p.R308Q 0.09 deleterious(0) probably_damaging(0.999) TCGA-BR-8059-01 4 155533225 155533225 T G FGG Missense_Mutation p.K84N 0.07 tolerated(0.56) benign(0.004) TCGA-BR-8059-01 4 156775402 156775402 C A ASIC5 Missense_Mutation p.V138F 0.14 tolerated(0.18) benign(0.188) TCGA-BR-8059-01 4 156825181 156825181 A C TDO2 Missense_Mutation p.K16T 0.15 tolerated(0.23) benign(0.027) TCGA-BR-8059-01 4 156830081 156830090 CACCGAGTGT - TDO2 Frame_Shift_Del p.H116Qfs*2 0.35 TCGA-BR-8059-01 4 159092149 159092149 G A FAM198B Missense_Mutation p.P127S 0.28 deleterious(0) possibly_damaging(0.803) TCGA-BR-8059-01 4 166915670 166915670 G A TLL1 Missense_Mutation p.G167R 0.17 deleterious(0.01) probably_damaging(0.954) TCGA-BR-8059-01 4 24838869 24838869 C T CCDC149 Missense_Mutation p.A215T 0.11 deleterious(0.03) probably_damaging(0.999) TCGA-BR-8059-01 4 2696824 2696824 T A FAM193A Missense_Mutation p.C791S 0.19 deleterious(0.01) probably_damaging(0.974) TCGA-BR-8059-01 4 2934405 2934406 - C MFSD10 Frame_Shift_Ins p.I152Hfs*15 0.22 TCGA-BR-8059-01 4 2959334 2959334 T G NOP14 Missense_Mutation p.Q110P 0.05 deleterious(0.01) probably_damaging(0.968) TCGA-BR-8059-01 4 3451181 3451181 C T HGFAC 3'UTR 0.19 TCGA-BR-8059-01 4 37848854 37848854 A G PGM2 Missense_Mutation p.N407S 0.15 tolerated(0.17) possibly_damaging(0.856) TCGA-BR-8059-01 4 39465194 39465194 G A LIAS Missense_Mutation p.G121E 0.09 deleterious(0) benign(0.234) TCGA-BR-8059-01 4 44684428 44684428 G T GUF1 Missense_Mutation p.K195N 0.16 deleterious(0) probably_damaging(0.969) TCGA-BR-8059-01 4 46967014 46967014 T C GABRA4 Silent p.R369R 0.11 TCGA-BR-8059-01 4 48852083 48852083 C T OCIAD1 Nonsense_Mutation p.R121* 0.19 TCGA-BR-8059-01 4 52862042 52862042 T G LRRC66 Silent p.S382S 0.20 TCGA-BR-8059-01 4 55594223 55594223 A C KIT Missense_Mutation p.K642N 0.11 deleterious(0) probably_damaging(1) TCGA-BR-8059-01 4 55958806 55958806 A T KDR Missense_Mutation p.M1016K 0.09 deleterious(0) probably_damaging(0.999) TCGA-BR-8059-01 4 56345861 56345861 T G CLOCK Missense_Mutation p.D18A 0.19 tolerated(0.05) benign(0.21) TCGA-BR-8059-01 4 57888355 57888355 A - POLR2B Frame_Shift_Del p.G822Dfs*19 0.25 TCGA-BR-8059-01 4 68693133 68693133 A G TMPRSS11D Silent p.S266S 0.15 TCGA-BR-8059-01 4 68928301 68928301 G A TMPRSS11F Intron 0.15 TCGA-BR-8059-01 4 68930432 68930432 A G TMPRSS11F Missense_Mutation p.V329A 0.09 deleterious(0) probably_damaging(0.999) TCGA-BR-8059-01 4 74453644 74453644 G A RASSF6 Missense_Mutation p.R131C 0.07 deleterious(0.01) benign(0.168) TCGA-BR-8059-01 4 74703477 74703477 G C CXCL6 3'UTR 0.10 TCGA-BR-8059-01 4 759961 759961 A C PCGF3 3'UTR 0.23 TCGA-BR-8059-01 4 83719567 83719567 G A SCD5 Missense_Mutation p.R42W 0.11 deleterious(0.02) benign(0.312) TCGA-BR-8059-01 4 83783724 83783724 A G SEC31A Missense_Mutation p.I504T 0.10 deleterious(0.03) benign(0.06) TCGA-BR-8059-01 4 83906010 83906010 G A LIN54 5'UTR 0.16 TCGA-BR-8059-01 4 85781643 85781643 C G WDFY3 Missense_Mutation p.E34D 0.18 tolerated(0.17) benign(0.39) TCGA-BR-8059-01 4 96761335 96761335 C T PDHA2 Nonsense_Mutation p.R12* 0.09 TCGA-BR-8059-01 5 129520970 129520970 C T CHSY3 Missense_Mutation p.T712I 0.16 deleterious(0.01) possibly_damaging(0.828) TCGA-BR-8059-01 5 132210178 132210178 A T LEAP2 3'UTR 0.33 TCGA-BR-8059-01 5 135383090 135383090 A G TGFBI Missense_Mutation p.D251G 0.06 deleterious(0) probably_damaging(0.998) TCGA-BR-8059-01 5 13752383 13752383 G C DNAH5 Missense_Mutation p.H3630D 0.12 possibly_damaging(0.537) TCGA-BR-8059-01 5 137802687 137802687 C T EGR1 Silent p.S183S 0.18 TCGA-BR-8059-01 5 137894317 137894317 C T HSPA9 Silent p.T480T 0.11 TCGA-BR-8059-01 5 13845022 13845022 G A DNAH5 Missense_Mutation p.A1732V 0.12 benign(0.008) TCGA-BR-8059-01 5 13919307 13919307 G A DNAH5 Missense_Mutation p.A318V 0.06 possibly_damaging(0.798) TCGA-BR-8059-01 5 140187191 140187215 TGTCCATCGCGGAATCCAGGCCGCT - PCDHA4 Frame_Shift_Del p.S141Tfs*6 0.11 TCGA-BR-8059-01 5 140256667 140256667 C T PCDHA12 Missense_Mutation p.A537V 0.20 deleterious_low_confidence(0.01) probably_damaging(0.923) TCGA-BR-8059-01 5 140307999 140307999 A G PCDHAC1 Missense_Mutation p.T508A 0.19 deleterious(0.02) benign(0.051) TCGA-BR-8059-01 5 140433387 140433387 T A PCDHB1 Missense_Mutation p.F778I 0.41 tolerated(0.15) probably_damaging(0.994) TCGA-BR-8059-01 5 140475743 140475743 T C PCDHB2 Missense_Mutation p.S457P 0.13 deleterious_low_confidence(0) possibly_damaging(0.714) TCGA-BR-8059-01 5 140531705 140531705 C T PCDHB6 Missense_Mutation p.R623C 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.855) TCGA-BR-8059-01 5 140559252 140559252 C T PCDHB8 Missense_Mutation p.A546V 0.13 tolerated_low_confidence(0.06) benign(0.144) TCGA-BR-8059-01 5 140594824 140594824 G T PCDHB13 Nonsense_Mutation p.G377* 0.10 TCGA-BR-8059-01 5 140625761 140625761 G T PCDHB15 Missense_Mutation p.Q205H 0.13 deleterious_low_confidence(0.01) benign(0.041) TCGA-BR-8059-01 5 140751508 140751508 C T PCDHGB3 Missense_Mutation p.A516V 0.11 deleterious(0.01) possibly_damaging(0.696) TCGA-BR-8059-01 5 140754789 140754789 G C PCDHGA6 Missense_Mutation p.G380A 0.25 tolerated_low_confidence(0.08) possibly_damaging(0.85) TCGA-BR-8059-01 5 140772926 140772926 G T PCDHGA8 Silent p.V182V 0.12 TCGA-BR-8059-01 5 140798806 140798806 C T PCDHGB7 Silent p.H460H 0.22 TCGA-BR-8059-01 5 140906001 140906001 A G DIAPH1 Missense_Mutation p.Y1101H 0.25 probably_damaging(0.937) TCGA-BR-8059-01 5 140908386 140908386 T G DIAPH1 Missense_Mutation p.L967F 0.23 probably_damaging(0.996) TCGA-BR-8059-01 5 141329002 141329002 C T PCDH12 Missense_Mutation p.S1042N 0.20 tolerated(0.47) benign(0) TCGA-BR-8059-01 5 14369554 14369554 G T TRIO Missense_Mutation p.K1046N 0.12 possibly_damaging(0.838) TCGA-BR-8059-01 5 147889351 147889351 A G HTR4 Silent p.T248T 0.13 TCGA-BR-8059-01 5 148406600 148406607 GATAGTTT TG SH3TC2 In_Frame_Del p.R896_L899delinsSI 0.19 TCGA-BR-8059-01 5 149933039 149933039 G T NDST1 3'UTR 0.14 TCGA-BR-8059-01 5 150704952 150704952 C A SLC36A2 Missense_Mutation p.G302V 0.12 deleterious(0.01) probably_damaging(0.976) TCGA-BR-8059-01 5 167489185 167489185 A G TENM2 Missense_Mutation p.Q477R 0.25 tolerated(0.57) benign(0.009) TCGA-BR-8059-01 5 169461447 169461447 T G DOCK2 Missense_Mutation p.V1171G 0.18 tolerated(1) benign(0.001) TCGA-BR-8059-01 5 172660043 172660043 G A NKX2-5 Silent p.R168R 0.33 TCGA-BR-8059-01 5 34914837 34914837 T C RAD1 Missense_Mutation p.E54G 0.17 deleterious(0) probably_damaging(0.998) TCGA-BR-8059-01 5 35700701 35700701 A G SPEF2 Missense_Mutation p.T749A 0.10 tolerated(0.87) benign(0.008) TCGA-BR-8059-01 5 37064899 37064899 A - NIPBL Frame_Shift_Del p.I2776Lfs*3 0.19 TCGA-BR-8059-01 5 55260015 55260015 T G IL6ST Missense_Mutation p.K206T 0.07 tolerated(0.09) benign(0.017) TCGA-BR-8059-01 5 55407146 55407146 G A ANKRD55 Nonsense_Mutation p.Q477* 0.15 TCGA-BR-8059-01 5 63510031 63510031 A G RNF180 Missense_Mutation p.Q293R 0.09 tolerated(0.26) benign(0.403) TCGA-BR-8059-01 5 64064388 64064388 G C SREK1IP1 5'UTR 0.19 TCGA-BR-8059-01 5 6633932 6633932 C G SRD5A1 Missense_Mutation p.S81R 0.11 tolerated(0.48) benign(0.002) TCGA-BR-8059-01 5 6753132 6753132 C T PAPD7 Silent p.S472S 0.10 TCGA-BR-8059-01 5 72848513 72848513 A - ANKRA2 3'UTR 0.21 TCGA-BR-8059-01 5 75886244 75886244 G T IQGAP2 Missense_Mutation p.V218F 0.11 deleterious(0) possibly_damaging(0.898) TCGA-BR-8059-01 5 83680326 83680326 C T EDIL3 5'UTR 0.36 TCGA-BR-8059-01 5 89815015 89815016 - TC LYSMD3 Frame_Shift_Ins p.N181Rfs*6 0.16 TCGA-BR-8059-01 5 90678675 90678677 CTT - ARRDC3 In_Frame_Del p.E78del 0.13 TCGA-BR-8059-01 5 914598 914598 C T TRIP13 Missense_Mutation p.R347C 0.12 deleterious(0.03) benign(0.015) TCGA-BR-8059-01 5 95119546 95119546 A G RHOBTB3 Missense_Mutation p.Y501C 0.16 deleterious(0) probably_damaging(0.976) TCGA-BR-8059-01 5 96126242 96126243 - T ERAP1 Frame_Shift_Ins p.N475Kfs*7 0.14 TCGA-BR-8059-01 6 100838323 100838323 A T SIM1 Missense_Mutation p.F739I 0.15 deleterious_low_confidence(0.02) benign(0.15) TCGA-BR-8059-01 6 109770982 109770982 T G MICAL1 Missense_Mutation p.S438R 0.16 deleterious(0) probably_damaging(0.999) TCGA-BR-8059-01 6 11190485 11190485 G A NEDD9 Silent p.P539P 0.18 TCGA-BR-8059-01 6 134305583 134305583 C A TBPL1 Missense_Mutation p.P118T 0.16 tolerated(0.52) benign(0.004) TCGA-BR-8059-01 6 137187777 137187777 T C PEX7 Missense_Mutation p.L180P 0.15 deleterious(0) possibly_damaging(0.469) TCGA-BR-8059-01 6 142468427 142468427 G A VTA1 Translation_Start_Site p.M1? 0.23 deleterious_low_confidence(0) unknown(0) TCGA-BR-8059-01 6 152639292 152639292 T A SYNE1 Missense_Mutation p.K5499M 0.13 possibly_damaging(0.471) TCGA-BR-8059-01 6 154489165 154489165 G A IPCEF1 Nonsense_Mutation p.R332* 0.05 TCGA-BR-8059-01 6 15501398 15501398 C A JARID2 Missense_Mutation p.P736T 0.12 deleterious(0) probably_damaging(0.936) TCGA-BR-8059-01 6 155632375 155632375 C T TFB1M Missense_Mutation p.V78I 0.16 tolerated(0.43) benign(0.055) TCGA-BR-8059-01 6 158922885 158922885 T C TULP4 Silent p.A730A 0.14 TCGA-BR-8059-01 6 159204595 159204595 C G EZR Missense_Mutation p.G219R 0.08 deleterious(0) probably_damaging(0.996) TCGA-BR-8059-01 6 160164762 160164762 C T WTAP Missense_Mutation p.R71C 0.13 deleterious(0.01) benign(0.133) TCGA-BR-8059-01 6 161494549 161494549 T C MAP3K4 Missense_Mutation p.Y668H 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8059-01 6 161510388 161510388 C T MAP3K4 Missense_Mutation p.A953V 0.11 tolerated(0.1) benign(0.019) TCGA-BR-8059-01 6 165746493 165746493 G A PDE10A 3'UTR 0.14 TCGA-BR-8059-01 6 167417716 167417716 T - FGFR1OP Intron 0.21 TCGA-BR-8059-01 6 27114929 27114929 G T HIST1H2AH Missense_Mutation p.G8C 0.22 deleterious_low_confidence(0) unknown(0) TCGA-BR-8059-01 6 30865334 30865334 G C DDR1 Missense_Mutation p.A732P 0.14 tolerated(0.32) benign(0.003) TCGA-BR-8059-01 6 30919972 30919972 C A DPCR1 Missense_Mutation p.P1244H 0.16 tolerated(0.18) possibly_damaging(0.598) TCGA-BR-8059-01 6 31655315 31655315 T G ABHD16A Missense_Mutation p.D518A 0.18 tolerated(0.09) possibly_damaging(0.449) TCGA-BR-8059-01 6 32096678 32096678 C - FKBPL Frame_Shift_Del p.V294Lfs*22 0.14 TCGA-BR-8059-01 6 32821354 32821354 G C TAP1 Silent p.L80L 0.28 TCGA-BR-8059-01 6 348194 348194 C T DUSP22 Missense_Mutation p.R119C 0.04 deleterious(0) probably_damaging(0.989) TCGA-BR-8059-01 6 37619916 37619916 C T MDGA1 Missense_Mutation p.A395T 0.16 deleterious(0.04) benign(0.435) TCGA-BR-8059-01 6 41705491 41705491 G C PGC Missense_Mutation p.P331A 0.08 deleterious(0.01) benign(0.424) TCGA-BR-8059-01 6 42227283 42227283 C T TRERF1 Missense_Mutation p.R688H 0.33 deleterious(0.02) possibly_damaging(0.522) TCGA-BR-8059-01 6 43013029 43013029 G A CUL7 Missense_Mutation p.R1076W 0.08 deleterious(0.03) possibly_damaging(0.479) TCGA-BR-8059-01 6 43415496 43415496 G A ABCC10 Silent p.P1260P 0.13 TCGA-BR-8059-01 6 45296404 45296404 G A RUNX2 5'UTR 0.12 TCGA-BR-8059-01 6 51907739 51907739 G A PKHD1 Silent p.A1005A 0.17 TCGA-BR-8059-01 6 52133966 52133966 G A MCM3 Missense_Mutation p.A674V 0.24 deleterious(0) probably_damaging(1) TCGA-BR-8059-01 6 52329713 52329713 C T EFHC1 Silent p.L313L 0.11 TCGA-BR-8059-01 6 54805046 54805046 C T FAM83B Missense_Mutation p.A426V 0.20 tolerated(0.41) benign(0.007) TCGA-BR-8059-01 6 56006611 56006611 T C COL21A1 Missense_Mutation p.K505R 0.18 tolerated(0.2) benign(0.033) TCGA-BR-8059-01 6 56468205 56468205 C G DST Intron 0.12 TCGA-BR-8059-01 6 69665963 69665963 A C BAI3 Missense_Mutation p.T415P 0.14 deleterious(0) probably_damaging(0.998) TCGA-BR-8059-01 6 7226887 7226887 C G RREB1 Missense_Mutation p.Q299E 0.07 deleterious(0.02) benign(0.073) TCGA-BR-8059-01 6 74228300 74228300 G C EEF1A1 Missense_Mutation p.T269S 0.20 deleterious_low_confidence(0.02) benign(0.038) TCGA-BR-8059-01 6 7601644 7601644 G A SNRNP48 Missense_Mutation p.R161H 0.06 deleterious(0) possibly_damaging(0.895) TCGA-BR-8059-01 6 76063371 76063376 CAGCAA - FILIP1 In_Frame_Del p.L170_L171del 0.16 TCGA-BR-8059-01 6 90422432 90422432 C T MDN1 Missense_Mutation p.G2431D 0.10 benign(0) TCGA-BR-8059-01 7 100395212 100395212 G T ZAN Nonsense_Mutation p.E2702* 0.10 TCGA-BR-8059-01 7 100417826 100417826 C T EPHB4 Missense_Mutation p.V301I 0.11 tolerated(0.65) benign(0.01) TCGA-BR-8059-01 7 100469250 100469250 G C TRIP6 Missense_Mutation p.C362S 0.21 deleterious(0.03) benign(0.099) TCGA-BR-8059-01 7 100677233 100677233 T C MUC17 Missense_Mutation p.S846P 0.17 unknown(0) TCGA-BR-8059-01 7 105615467 105615467 A G CDHR3 Missense_Mutation p.N75S 0.18 tolerated(0.43) probably_damaging(0.991) TCGA-BR-8059-01 7 106786831 106786831 C T PRKAR2B Silent p.G222G 0.21 TCGA-BR-8059-01 7 106924081 106924081 A - COG5 Frame_Shift_Del p.P503Rfs*19 0.17 TCGA-BR-8059-01 7 1131429 1131429 C T GPER1 Missense_Mutation p.A22V 0.09 tolerated_low_confidence(0.57) benign(0.002) TCGA-BR-8059-01 7 1192664 1192664 A T ZFAND2A 3'UTR 0.12 TCGA-BR-8059-01 7 119914590 119914590 G T KCND2 5'UTR 0.19 TCGA-BR-8059-01 7 121943889 121943889 C T FEZF1 Silent p.R201R 0.11 TCGA-BR-8059-01 7 122635598 122635616 CTGCAACAATTAGGCTGCT - TAS2R16 Frame_Shift_Del p.S25Cfs*12 0.08 TCGA-BR-8059-01 7 126746611 126746611 A C GRM8 Silent p.A222A 0.22 TCGA-BR-8059-01 7 1273168 1273168 C A UNCX Missense_Mutation p.P96Q 0.20 deleterious(0.01) benign(0.167) TCGA-BR-8059-01 7 127668913 127668913 C T LRRC4 Missense_Mutation p.G594E 0.11 tolerated_low_confidence(0.88) benign(0.009) TCGA-BR-8059-01 7 134849177 134849177 G A TMEM140 5'UTR 0.13 TCGA-BR-8059-01 7 138732366 138732366 C T ZC3HAV1 Missense_Mutation p.E895K 0.19 deleterious(0.02) benign(0.02) TCGA-BR-8059-01 7 140434413 140434413 G A BRAF Missense_Mutation p.A762V 0.09 tolerated(0.29) benign(0.005) TCGA-BR-8059-01 7 142239731 142239731 G T TRBV9 Missense_Mutation p.S50Y 0.19 tolerated(0.25) benign(0.049) TCGA-BR-8059-01 7 142334867 142334867 A G TRBV20-1 Missense_Mutation p.S97G 0.10 tolerated(0.15) benign(0.027) TCGA-BR-8059-01 7 150070054 150070054 T A REPIN1 3'Flank 0.14 TCGA-BR-8059-01 7 150269275 150269275 C T GIMAP4 Silent p.T39T 0.10 TCGA-BR-8059-01 7 150325008 150325008 G A GIMAP6 Silent p.N226N 0.16 TCGA-BR-8059-01 7 150554028 150554035 AAGCCACC - AOC1 Frame_Shift_Del p.T159Pfs*18 0.09 TCGA-BR-8059-01 7 150752874 150752874 C A CDK5 Missense_Mutation p.R125M 0.13 deleterious(0) probably_damaging(1) TCGA-BR-8059-01 7 20825340 20825340 C T SP8 Silent p.P32P 0.09 TCGA-BR-8059-01 7 21609806 21609806 A - DNAH11 Frame_Shift_Del p.K440Nfs*11 0.12 TCGA-BR-8059-01 7 23749937 23749937 C G STK31 Silent p.S11S 0.24 TCGA-BR-8059-01 7 27213459 27213459 G C HOXA10 Missense_Mutation p.S156W 0.18 deleterious(0.01) probably_damaging(0.97) TCGA-BR-8059-01 7 37264526 37264526 G A ELMO1 Missense_Mutation p.A220V 0.12 deleterious(0.03) probably_damaging(0.999) TCGA-BR-8059-01 7 38424457 38424457 C A AMPH Missense_Mutation p.G684C 0.11 deleterious(0) probably_damaging(1) TCGA-BR-8059-01 7 38475965 38475965 T A AMPH Missense_Mutation p.K347N 0.15 deleterious(0.03) probably_damaging(0.999) TCGA-BR-8059-01 7 43918566 43918566 C T URGCP Missense_Mutation p.A166T 0.16 tolerated(0.42) benign(0.088) TCGA-BR-8059-01 7 44721400 44721400 C T OGDH Missense_Mutation p.P430S 0.17 deleterious(0) probably_damaging(1) TCGA-BR-8059-01 7 44747227 44747228 - C OGDH Frame_Shift_Ins p.N950Qfs*3 0.09 TCGA-BR-8059-01 7 50742167 50742167 G A GRB10 Nonsense_Mutation p.Q110* 0.13 TCGA-BR-8059-01 7 53104122 53104122 C A POM121L12 Missense_Mutation p.P253H 0.17 deleterious(0.01) probably_damaging(0.979) TCGA-BR-8059-01 7 5348924 5348924 C T TNRC18 Missense_Mutation p.G2822R 0.12 unknown(0) TCGA-BR-8059-01 7 56149350 56149350 C T PHKG1 Silent p.R329R 0.12 TCGA-BR-8059-01 7 57188753 57188753 T C ZNF479 Silent p.L123L 0.12 TCGA-BR-8059-01 7 66563632 66563632 T G TYW1 Missense_Mutation p.F497V 0.15 deleterious(0) possibly_damaging(0.895) TCGA-BR-8059-01 7 70886093 70886093 T C WBSCR17 Splice_Site p.X321_splice 0.09 TCGA-BR-8059-01 7 72985158 72985158 G - TBL2 Frame_Shift_Del p.N342Tfs*75 0.17 TCGA-BR-8059-01 7 77407902 77407902 G A RSBN1L Missense_Mutation p.R653H 0.17 deleterious(0) probably_damaging(1) TCGA-BR-8059-01 7 82579563 82579563 C T PCLO Silent p.T3447T 0.15 TCGA-BR-8059-01 7 82585300 82585300 C G PCLO Missense_Mutation p.V1657L 0.20 unknown(0) TCGA-BR-8059-01 7 87196175 87196175 A - ABCB1 Frame_Shift_Del p.H153Mfs*3 0.09 TCGA-BR-8059-01 7 88963842 88963842 G A ZNF804B Missense_Mutation p.V516I 0.21 deleterious(0.03) benign(0.007) TCGA-BR-8059-01 7 89861956 89861956 A C STEAP2 3'UTR 0.11 TCGA-BR-8059-01 7 90896031 90896031 C T FZD1 Silent p.I612I 0.15 TCGA-BR-8059-01 7 91622286 91622286 G A AKAP9 Missense_Mutation p.A165T 0.17 benign(0.023) TCGA-BR-8059-01 7 93055791 93055791 C A CALCR Missense_Mutation p.E468D 0.16 tolerated(0.4) benign(0.167) TCGA-BR-8059-01 7 97862264 97862265 TG - TECPR1 Frame_Shift_Del p.M565Afs*101 0.14 TCGA-BR-8059-01 7 98609072 98609072 G T TRRAP Nonsense_Mutation p.E3737* 0.19 TCGA-BR-8059-01 7 99023071 99023071 G A ATP5J2-PTCD1 Missense_Mutation p.R411W 0.12 deleterious(0.02) benign(0.021) TCGA-BR-8059-01 7 99918688 99918688 G A SPDYE3 3'UTR 0.14 TCGA-BR-8059-01 8 100520118 100520118 T C VPS13B Silent p.N1426N 0.09 TCGA-BR-8059-01 8 100844880 100844880 G T VPS13B Missense_Mutation p.R3230M 0.13 deleterious(0) possibly_damaging(0.507) TCGA-BR-8059-01 8 101075945 101075945 C A RGS22 Missense_Mutation p.V351L 0.19 deleterious(0.03) possibly_damaging(0.591) TCGA-BR-8059-01 8 110456117 110456117 C A PKHD1L1 Missense_Mutation p.P1593T 0.11 tolerated(1) benign(0.001) TCGA-BR-8059-01 8 110478991 110478991 C T PKHD1L1 Silent p.D2866D 0.11 TCGA-BR-8059-01 8 113304872 113304872 A G CSMD3 Silent p.N2894N 0.12 TCGA-BR-8059-01 8 124371527 124371532 TTTAGA - ATAD2 In_Frame_Del p.L438_K439del 0.10 TCGA-BR-8059-01 8 124371882 124371882 A - ATAD2 Frame_Shift_Del p.Y401Ifs*5 0.12 TCGA-BR-8059-01 8 131070229 131070229 C T ASAP1 Missense_Mutation p.V1096I 0.04 deleterious(0.01) probably_damaging(0.911) TCGA-BR-8059-01 8 132051889 132051889 C T ADCY8 Missense_Mutation p.V231M 0.15 tolerated(0.18) possibly_damaging(0.806) TCGA-BR-8059-01 8 133849991 133849991 G T PHF20L1 Missense_Mutation p.C709F 0.16 deleterious(0) probably_damaging(1) TCGA-BR-8059-01 8 133895150 133895150 G A TG Silent p.A327A 0.09 TCGA-BR-8059-01 8 142367096 142367096 C A GPR20 Missense_Mutation p.G310C 0.11 deleterious(0) possibly_damaging(0.711) TCGA-BR-8059-01 8 145689685 145689685 G T CYHR1 Intron 0.16 TCGA-BR-8059-01 8 16962959 16962959 G C MICU3 Missense_Mutation p.E375Q 0.11 deleterious(0) possibly_damaging(0.905) TCGA-BR-8059-01 8 19362795 19362795 A C CSGALNACT1 Missense_Mutation p.I184S 0.18 deleterious(0) benign(0.035) TCGA-BR-8059-01 8 19809439 19809439 C T LPL Missense_Mutation p.R137W 0.19 deleterious(0) possibly_damaging(0.802) TCGA-BR-8059-01 8 2092844 2092844 C - MYOM2 Frame_Shift_Del p.P1447Rfs*65 0.20 TCGA-BR-8059-01 8 22472975 22472975 C - CCAR2 Frame_Shift_Del p.R417Gfs*89 0.09 TCGA-BR-8059-01 8 24774700 24774700 C G NEFM Silent p.P444P 0.14 TCGA-BR-8059-01 8 38688659 38688659 G A TACC1 Silent p.T559T 0.17 TCGA-BR-8059-01 8 39613289 39613289 T A ADAM2 Missense_Mutation p.Q585H 0.21 tolerated(0.12) benign(0.001) TCGA-BR-8059-01 8 48701571 48701571 G T PRKDC Missense_Mutation p.P3599T 0.16 benign(0.004) TCGA-BR-8059-01 8 61654080 61654080 C T CHD7 Missense_Mutation p.P30L 0.17 possibly_damaging(0.726) TCGA-BR-8059-01 8 65528708 65528708 T G CYP7B1 Missense_Mutation p.K130N 0.23 tolerated(0.37) benign(0.004) TCGA-BR-8059-01 8 67066483 67066483 C T TRIM55 Missense_Mutation p.R480W 0.17 deleterious_low_confidence(0.01) benign(0.28) TCGA-BR-8059-01 8 76452273 76452273 A G HNF4G Missense_Mutation p.T16A 0.10 tolerated(0.09) benign(0.005) TCGA-BR-8059-01 8 77765876 77765876 T G ZFHX4 Missense_Mutation p.V2240G 0.36 probably_damaging(0.931) TCGA-BR-8059-01 8 86163053 86163053 A G CA13 Missense_Mutation p.Y41C 0.17 deleterious(0.01) possibly_damaging(0.88) TCGA-BR-8059-01 8 94805495 94805495 C T TMEM67 Missense_Mutation p.R549C 0.23 deleterious(0) probably_damaging(0.996) TCGA-BR-8059-01 8 98155373 98155373 G A CPQ Missense_Mutation p.V461I 0.09 tolerated(0.2) benign(0.02) TCGA-BR-8059-01 8 99101668 99101668 G C C8orf47 Missense_Mutation p.E141D 0.26 deleterious(0.02) benign(0.059) TCGA-BR-8059-01 8 99168468 99168468 A - POP1 Frame_Shift_Del p.T752Lfs*12 0.18 TCGA-BR-8059-01 9 102590532 102590532 G A NR4A3 Missense_Mutation p.E81K 0.21 deleterious(0.01) benign(0.318) TCGA-BR-8059-01 9 111701922 111701922 G T FAM206A Nonsense_Mutation p.E168* 0.12 TCGA-BR-8059-01 9 111956584 111956584 G A EPB41L4B Silent p.S713S 0.26 TCGA-BR-8059-01 9 113221306 113221306 T G SVEP1 Missense_Mutation p.K1137T 0.16 probably_damaging(0.997) TCGA-BR-8059-01 9 131048215 131048215 C T SWI5 Intron 0.12 TCGA-BR-8059-01 9 131071975 131071975 G A TRUB2 Missense_Mutation p.R284W 0.12 tolerated(0.1) benign(0.001) TCGA-BR-8059-01 9 131117771 131117771 C T SLC27A4 Silent p.T519T 0.10 TCGA-BR-8059-01 9 133506105 133506105 G A FUBP3 Missense_Mutation p.R403Q 0.17 deleterious(0) probably_damaging(0.985) TCGA-BR-8059-01 9 135929863 135929863 G A GTF3C5 Missense_Mutation p.V353I 0.17 tolerated(0.24) benign(0.005) TCGA-BR-8059-01 9 136402618 136402618 G A ADAMTSL2 Missense_Mutation p.R61H 0.09 deleterious(0) probably_damaging(1) TCGA-BR-8059-01 9 136573487 136573487 G A SARDH Silent p.Y464Y 0.06 TCGA-BR-8059-01 9 138516492 138516492 C T GLT6D1 Silent p.P94P 0.17 TCGA-BR-8059-01 9 139317772 139317772 C T PMPCA 3'UTR 0.15 TCGA-BR-8059-01 9 139743963 139743963 C T PHPT1 Silent p.V27V 0.30 TCGA-BR-8059-01 9 140995610 140995610 C T CACNA1B Intron 0.10 TCGA-BR-8059-01 9 141016353 141016353 C T CACNA1B Missense_Mutation p.R2308C 0.08 tolerated(0.05) benign(0.033) TCGA-BR-8059-01 9 19785935 19785935 C A SLC24A2 Missense_Mutation p.K310N 0.16 tolerated(0.18) benign(0.067) TCGA-BR-8059-01 9 20944775 20944775 T C FOCAD Splice_Site p.X1185_splice 0.13 TCGA-BR-8059-01 9 21201782 21201782 C A IFNA7 Missense_Mutation p.G128V 0.09 deleterious(0.03) possibly_damaging(0.679) TCGA-BR-8059-01 9 35382496 35382496 A G UNC13B Missense_Mutation p.N851D 0.17 deleterious(0) possibly_damaging(0.49) TCGA-BR-8059-01 9 35616552 35616552 G A CD72 Intron 0.22 TCGA-BR-8059-01 9 35808513 35808513 C T NPR2 Missense_Mutation p.T907M 0.18 deleterious(0) probably_damaging(1) TCGA-BR-8059-01 9 4576621 4576621 G A SLC1A1 Missense_Mutation p.D351N 0.11 deleterious(0.01) probably_damaging(0.974) TCGA-BR-8059-01 9 5787567 5787567 G A ERMP1 Nonsense_Mutation p.R805* 0.14 TCGA-BR-8059-01 9 72961550 72961552 CTC - SMC5 In_Frame_Del p.S853del 0.17 TCGA-BR-8059-01 9 78686713 78686713 G A PCSK5 Missense_Mutation p.V265M 0.14 deleterious(0) probably_damaging(0.979) TCGA-BR-8059-01 9 79322985 79322985 T C PRUNE2 Missense_Mutation p.E1402G 0.22 tolerated(0.08) benign(0.022) TCGA-BR-8059-01 9 8460412 8460412 T - PTPRD Frame_Shift_Del p.R1292Gfs*28 0.09 TCGA-BR-8059-01 9 88200433 88200433 C T AGTPBP1 Nonsense_Mutation p.W997* 0.16 TCGA-BR-8059-01 9 90321379 90321379 C T DAPK1 Silent p.I1131I 0.11 TCGA-BR-8059-01 X 102931372 102931372 C A MORF4L2 Missense_Mutation p.G195V 0.26 deleterious(0) probably_damaging(0.998) TCGA-BR-8059-01 X 114357666 114357666 C A LRCH2 Nonsense_Mutation p.E647* 0.40 TCGA-BR-8059-01 X 13795513 13795513 T G GPM6B Missense_Mutation p.K243N 0.27 deleterious(0) benign(0.092) TCGA-BR-8059-01 X 140994648 140994648 C A MAGEC1 Silent p.S486S 0.34 TCGA-BR-8059-01 X 148577905 148577905 G A IDS Missense_Mutation p.P73L 0.46 deleterious(0) probably_damaging(0.999) TCGA-BR-8059-01 X 149938842 149938842 T A CD99L2 Missense_Mutation p.Q219L 0.10 deleterious(0) benign(0.375) TCGA-BR-8059-01 X 150817162 150817162 T A PASD1 Silent p.A235A 0.41 TCGA-BR-8059-01 X 150912810 150912810 A G CNGA2 Missense_Mutation p.Y612C 0.10 deleterious(0) possibly_damaging(0.706) TCGA-BR-8059-01 X 153228859 153228859 C T HCFC1 Missense_Mutation p.E177K 0.46 deleterious(0.02) probably_damaging(0.991) TCGA-BR-8059-01 X 153588107 153588107 G A FLNA Silent p.Y1324Y 0.30 TCGA-BR-8059-01 X 155254981 155254981 C A WASH6P RNA 0.11 TCGA-BR-8059-01 X 18598025 18598025 A G CDKL5 Missense_Mutation p.S114G 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.728) TCGA-BR-8059-01 X 41394005 41394006 - T CASK Frame_Shift_Ins p.N752Kfs*38 0.20 TCGA-BR-8059-01 X 48545268 48545268 C A WAS Missense_Mutation p.P220T 0.24 tolerated(0.15) benign(0.021) TCGA-BR-8059-01 X 50378091 50378091 G T SHROOM4 Missense_Mutation p.L328I 0.23 tolerated(0.28) benign(0.02) TCGA-BR-8059-01 X 51487718 51487718 T C GSPT2 Silent p.H332H 0.21 TCGA-BR-8059-01 X 53113997 53113997 C T TSPYL2 Missense_Mutation p.P316S 0.11 deleterious(0.03) probably_damaging(1) TCGA-BR-8059-01 X 73069973 73069973 T G XIST RNA 0.40 TCGA-BR-8059-01 X 75004886 75004886 T C MAGEE2 Translation_Start_Site p.M1? 0.38 deleterious_low_confidence(0) possibly_damaging(0.761) TCGA-BR-8059-01 Y 14848463 14848463 C T USP9Y Silent p.L382L 0.42 TCGA-BR-8059-01 Y 16952864 16952879 CAGAACGAAGAGATCA - NLGN4Y Frame_Shift_Del p.Q725Cfs*5 0.28 TCGA-BR-8060-01 10 104183256 104183256 C T CUEDC2 Missense_Mutation p.R264Q 0.31 deleterious(0.01) benign(0.081) TCGA-BR-8060-01 10 108380195 108380195 G A SORCS1 Silent p.N929N 0.32 TCGA-BR-8060-01 10 13174190 13174190 G A OPTN Missense_Mutation p.G509R 0.10 tolerated(0.51) possibly_damaging(0.716) TCGA-BR-8060-01 10 134218408 134218408 C T PWWP2B Missense_Mutation p.T135M 0.36 deleterious(0) probably_damaging(0.977) TCGA-BR-8060-01 10 3189395 3189395 G T PITRM1 Silent p.I762I 0.07 TCGA-BR-8060-01 10 38241894 38241894 C G ZNF25 Missense_Mutation p.E178Q 0.25 tolerated(0.7) probably_damaging(0.993) TCGA-BR-8060-01 10 61007424 61007424 T C FAM13C Missense_Mutation p.R570G 0.30 deleterious(0) probably_damaging(0.999) TCGA-BR-8060-01 11 1016404 1016404 G A MUC6 Missense_Mutation p.P2133S 0.26 benign(0.001) TCGA-BR-8060-01 11 123988953 123988953 G C VWA5A Missense_Mutation p.G102R 0.17 tolerated(0.06) benign(0.005) TCGA-BR-8060-01 11 125891294 125891294 T G CDON Missense_Mutation p.K66N 0.33 deleterious(0.04) benign(0.008) TCGA-BR-8060-01 11 1265770 1265771 - A MUC5B Frame_Shift_Ins p.T2555Dfs*126 0.09 TCGA-BR-8060-01 11 294366 294366 C T ATHL1 Silent p.F636F 0.10 TCGA-BR-8060-01 11 36654982 36654982 A G C11orf74 Silent p.E95E 0.15 TCGA-BR-8060-01 11 49179550 49179550 T C FOLH1 Missense_Mutation p.S496G 0.24 deleterious(0) possibly_damaging(0.901) TCGA-BR-8060-01 11 60167892 60167892 T C MS4A14 Missense_Mutation p.Y95H 0.25 tolerated(0.15) probably_damaging(0.979) TCGA-BR-8060-01 11 611720 611720 C T PHRF1 Silent p.R1630R 0.45 TCGA-BR-8060-01 11 67015837 67015837 C G KDM2A Missense_Mutation p.A684G 0.10 tolerated(0.57) benign(0) TCGA-BR-8060-01 11 6898329 6898329 T G OR10A4 Missense_Mutation p.F151V 0.11 tolerated(0.6) benign(0.042) TCGA-BR-8060-01 11 70260669 70260669 C T CTTN Nonsense_Mutation p.Q105* 0.62 TCGA-BR-8060-01 11 7334732 7334732 T G SYT9 Missense_Mutation p.L202V 0.17 deleterious(0) probably_damaging(0.996) TCGA-BR-8060-01 11 74899258 74899258 C A SLCO2B1 Missense_Mutation p.N350K 0.14 tolerated(0.26) benign(0.245) TCGA-BR-8060-01 11 75115548 75115550 ACG - RPS3 Intron 0.63 TCGA-BR-8060-01 11 77817939 77817939 T G ALG8 Silent p.R364R 0.13 TCGA-BR-8060-01 11 77835179 77835179 C G ALG8 Missense_Mutation p.D86H 0.17 deleterious(0) probably_damaging(1) TCGA-BR-8060-01 11 92531644 92531644 A G FAT3 Missense_Mutation p.K1822R 0.53 benign(0.013) TCGA-BR-8060-01 11 94039817 94039817 G A FOLR4 Missense_Mutation p.A93T 0.48 deleterious(0.03) probably_damaging(0.981) TCGA-BR-8060-01 12 105553927 105553927 G T KIAA1033 Splice_Site p.X1020_splice 0.59 TCGA-BR-8060-01 12 109945444 109945444 A C UBE3B Missense_Mutation p.K509T 0.23 deleterious(0.01) benign(0.066) TCGA-BR-8060-01 12 15661640 15661640 T A PTPRO Missense_Mutation p.V468E 0.36 deleterious(0) possibly_damaging(0.719) TCGA-BR-8060-01 12 51203290 51203290 C T ATF1 Silent p.D82D 0.10 TCGA-BR-8060-01 12 56525074 56525074 T G ESYT1 Missense_Mutation p.C230G 0.35 deleterious(0) probably_damaging(0.962) TCGA-BR-8060-01 12 56559402 56559402 G T SMARCC2 Silent p.R947R 0.25 TCGA-BR-8060-01 12 57348835 57348835 C T RDH16 Missense_Mutation p.D143N 0.18 deleterious(0.05) benign(0.082) TCGA-BR-8060-01 12 6637165 6637165 C A NCAPD2 Silent p.L1017L 0.74 TCGA-BR-8060-01 12 8670761 8670761 G A CLEC4D Silent p.V41V 0.24 TCGA-BR-8060-01 12 91371992 91371992 A G EPYC Silent p.T71T 0.22 TCGA-BR-8060-01 13 114079444 114079444 C T ADPRHL1 Missense_Mutation p.E233K 0.25 tolerated(0.39) possibly_damaging(0.631) TCGA-BR-8060-01 13 29598745 29598745 A G MTUS2 5'Flank 0.20 TCGA-BR-8060-01 13 49089853 49089853 A G RCBTB2 Silent p.L23L 0.75 TCGA-BR-8060-01 13 52976798 52976798 T - THSD1 5'UTR 0.18 TCGA-BR-8060-01 14 100835430 100835430 C T WARS Silent p.A31A 0.25 TCGA-BR-8060-01 14 101442848 101442848 T G SNORD114-19 RNA 0.24 TCGA-BR-8060-01 14 103806804 103806804 T G EIF5 Missense_Mutation p.I371S 0.27 deleterious(0) probably_damaging(0.977) TCGA-BR-8060-01 14 105615612 105615612 G A JAG2 Missense_Mutation p.R550C 0.64 deleterious(0.01) possibly_damaging(0.518) TCGA-BR-8060-01 14 19573110 19573110 A G POTEG Missense_Mutation p.Q403R 0.29 deleterious(0.01) possibly_damaging(0.573) TCGA-BR-8060-01 14 45716149 45716149 A T MIS18BP1 Missense_Mutation p.I114K 0.14 deleterious(0) possibly_damaging(0.77) TCGA-BR-8060-01 14 52456331 52456331 G C C14orf166 5'UTR 0.54 TCGA-BR-8060-01 14 68331815 68331815 T G RAD51B Silent p.A137A 0.08 TCGA-BR-8060-01 14 94754710 94754710 A G SERPINA10 Missense_Mutation p.L302P 0.33 deleterious(0) probably_damaging(1) TCGA-BR-8060-01 15 20662901 20662901 T A HERC2P3 RNA 0.10 TCGA-BR-8060-01 15 31664287 31664287 T C KLF13 Missense_Mutation p.Y218H 0.53 deleterious(0) possibly_damaging(0.585) TCGA-BR-8060-01 15 35219320 35219320 A G AQR Missense_Mutation p.F345S 0.10 deleterious(0.04) benign(0.155) TCGA-BR-8060-01 15 42823723 42823723 C T SNAP23 3'UTR 0.11 TCGA-BR-8060-01 15 63014609 63014609 G C TLN2 Missense_Mutation p.A1017P 0.20 tolerated(0.17) benign(0.117) TCGA-BR-8060-01 15 69348915 69348915 A C NOX5 Missense_Mutation p.K726T 0.22 deleterious(0.04) probably_damaging(0.978) TCGA-BR-8060-01 15 79284095 79284095 G C RASGRF1 Silent p.A1039A 0.17 TCGA-BR-8060-01 15 89400224 89400224 C T ACAN Missense_Mutation p.L1470F 0.21 tolerated(0.72) benign(0.062) TCGA-BR-8060-01 15 90347590 90347590 C T ANPEP Missense_Mutation p.G358E 0.05 deleterious(0) probably_damaging(0.999) TCGA-BR-8060-01 15 90996055 90996055 C T IQGAP1 Missense_Mutation p.A404V 0.44 tolerated(0.13) benign(0.009) TCGA-BR-8060-01 16 1544428 1544428 G A TELO2 Missense_Mutation p.R49K 0.21 tolerated(0.96) benign(0.001) TCGA-BR-8060-01 16 55361536 55361536 A C IRX6 Missense_Mutation p.K151T 0.27 deleterious(0) probably_damaging(0.995) TCGA-BR-8060-01 16 77387681 77387681 A G ADAMTS18 Silent p.C521C 0.34 TCGA-BR-8060-01 16 775267 775267 G A CCDC78 Silent p.P154P 0.50 TCGA-BR-8060-01 17 10366495 10366495 C T MYH4 Silent p.E272E 0.29 TCGA-BR-8060-01 17 15974752 15974752 G T NCOR1 Silent p.R1375R 0.24 TCGA-BR-8060-01 17 17106258 17106258 G A PLD6 Silent p.Y194Y 0.29 TCGA-BR-8060-01 17 26125862 26125862 T G NOS2 5'UTR 0.15 TCGA-BR-8060-01 17 26667426 26667426 A G TNFAIP1 Silent p.Q99Q 0.05 TCGA-BR-8060-01 17 28614874 28614874 A T BLMH Missense_Mutation p.M138K 0.56 tolerated(0.64) benign(0.005) TCGA-BR-8060-01 17 31352970 31352970 T C ASIC2 Missense_Mutation p.H390R 0.24 deleterious(0) benign(0.215) TCGA-BR-8060-01 17 32953187 32953187 C T TMEM132E Missense_Mutation p.P37S 0.54 tolerated_low_confidence(0.08) unknown(0) TCGA-BR-8060-01 17 37564657 37564659 AGG - MED1 In_Frame_Del p.S1272del 0.18 TCGA-BR-8060-01 17 37564790 37564790 A G MED1 Silent p.G1228G 0.19 TCGA-BR-8060-01 17 37565976 37565976 T - MED1 Frame_Shift_Del p.N833Ifs*31 0.20 TCGA-BR-8060-01 17 39137394 39137394 A C KRT40 Missense_Mutation p.L233V 0.08 tolerated(0.55) benign(0.015) TCGA-BR-8060-01 17 39406137 39406137 T G KRTAP9-4 Silent p.T55T 0.47 TCGA-BR-8060-01 17 40839790 40839790 G A CNTNAP1 Missense_Mutation p.G366E 0.23 tolerated(0.08) benign(0.306) TCGA-BR-8060-01 17 58506848 58506848 C G C17orf64 Silent p.S185S 0.12 TCGA-BR-8060-01 17 7578275 7578277 GAG - TP53 In_Frame_Del p.P191del 0.54 TCGA-BR-8060-01 17 76455190 76455190 A T DNAH17 Missense_Mutation p.Y3238N 0.45 benign(0.396) TCGA-BR-8060-01 17 8136252 8136252 A G CTC1 Silent p.S639S 0.30 TCGA-BR-8060-01 18 14851674 14851674 A G ANKRD30B Missense_Mutation p.E1125G 0.13 deleterious(0.01) possibly_damaging(0.792) TCGA-BR-8060-01 18 24496464 24496464 T C CHST9 Missense_Mutation p.Y364C 0.31 deleterious(0) probably_damaging(1) TCGA-BR-8060-01 18 43568704 43568704 A C PSTPIP2 Missense_Mutation p.V326G 0.27 deleterious(0) benign(0.394) TCGA-BR-8060-01 18 66503995 66503995 A T CCDC102B 5'UTR 0.43 TCGA-BR-8060-01 18 8376569 8376569 C T PTPRM Missense_Mutation p.R1146W 0.51 deleterious(0) probably_damaging(0.996) TCGA-BR-8060-01 19 11515827 11515827 A G RGL3 Missense_Mutation p.F394S 0.25 tolerated(0.29) benign(0.002) TCGA-BR-8060-01 19 11978372 11978372 C T ZNF439 Missense_Mutation p.P163L 0.05 deleterious(0.02) benign(0.004) TCGA-BR-8060-01 19 11978374 11978374 A T ZNF439 Nonsense_Mutation p.K164* 0.05 TCGA-BR-8060-01 19 15222474 15222474 C A SYDE1 Silent p.P483P 0.05 TCGA-BR-8060-01 19 18313419 18313419 G A RAB3A Silent p.D44D 0.63 TCGA-BR-8060-01 19 22156960 22156960 T C ZNF208 Silent p.K292K 0.30 TCGA-BR-8060-01 19 22171703 22171703 C T ZNF208 Silent p.L4L 0.05 TCGA-BR-8060-01 19 36004180 36004180 T G DMKN Missense_Mutation p.K66N 0.30 deleterious(0) benign(0.351) TCGA-BR-8060-01 19 38855535 38855535 C T CATSPERG Missense_Mutation p.T827M 0.22 tolerated(0.11) possibly_damaging(0.897) TCGA-BR-8060-01 19 43430747 43430747 A T PSG7 Silent p.G277G 0.16 TCGA-BR-8060-01 19 43430748 43430748 C T PSG7 Missense_Mutation p.G277D 0.16 deleterious(0.04) benign(0.104) TCGA-BR-8060-01 19 45912143 45912143 C A CD3EAP Missense_Mutation p.T306K 0.08 tolerated(0.93) benign(0.253) TCGA-BR-8060-01 19 51981912 51981912 C T CEACAM18 Missense_Mutation p.P67S 0.25 tolerated(0.18) benign(0.243) TCGA-BR-8060-01 19 52937309 52937309 G A ZNF534 Silent p.E39E 0.23 TCGA-BR-8060-01 19 53085474 53085474 G A ZNF701 Missense_Mutation p.M120I 0.18 tolerated(0.22) benign(0.003) TCGA-BR-8060-01 19 53311325 53311325 T C ZNF28 Missense_Mutation p.D26G 0.03 deleterious(0) possibly_damaging(0.9) TCGA-BR-8060-01 19 5587356 5587356 G A SAFB2 Silent p.G920G 0.55 TCGA-BR-8060-01 19 56972166 56972166 C T ZNF667 Missense_Mutation p.D18N 0.22 deleterious(0) probably_damaging(0.994) TCGA-BR-8060-01 19 815823 815823 G T LPPR3 Missense_Mutation p.S35Y 0.72 deleterious(0) probably_damaging(0.983) TCGA-BR-8060-01 19 9070244 9070244 A C MUC16 Silent p.S5734S 0.32 TCGA-BR-8060-01 19 9085239 9085239 A C MUC16 Silent p.V2192V 0.30 TCGA-BR-8060-01 19 9086391 9086391 T G MUC16 Missense_Mutation p.K1808N 0.40 unknown(0) TCGA-BR-8060-01 1 109486496 109486496 C T CLCC1 Missense_Mutation p.E175K 0.06 deleterious(0.01) possibly_damaging(0.665) TCGA-BR-8060-01 1 110030427 110030427 G A ATXN7L2 Splice_Site p.X234_splice 0.22 TCGA-BR-8060-01 1 114224904 114224904 G C MAGI3 Intron 0.26 TCGA-BR-8060-01 1 118512700 118512700 T G SPAG17 Missense_Mutation p.K2122N 0.20 deleterious(0) possibly_damaging(0.821) TCGA-BR-8060-01 1 147090675 147090675 C A BCL9 Silent p.P238P 0.09 TCGA-BR-8060-01 1 151280124 151280124 G C PI4KB Missense_Mutation p.P382A 0.12 deleterious(0.02) possibly_damaging(0.767) TCGA-BR-8060-01 1 152127309 152127309 T C RPTN Missense_Mutation p.R756G 0.14 deleterious(0) probably_damaging(0.94) TCGA-BR-8060-01 1 153177248 153177248 A C LELP1 Missense_Mutation p.K22T 0.05 deleterious_low_confidence(0.02) benign(0.192) TCGA-BR-8060-01 1 156255304 156255304 A T TMEM79 Missense_Mutation p.D96V 0.12 tolerated(0.21) benign(0.006) TCGA-BR-8060-01 1 156779164 156779164 G T SH2D2A Missense_Mutation p.P288H 0.12 deleterious(0.02) probably_damaging(0.994) TCGA-BR-8060-01 1 159002375 159002375 A T IFI16 Missense_Mutation p.Q408L 0.14 deleterious(0.01) possibly_damaging(0.465) TCGA-BR-8060-01 1 160771742 160771742 G A LY9 Intron 0.35 TCGA-BR-8060-01 1 161693288 161693288 T C FCRLB Missense_Mutation p.Y62H 0.19 tolerated(0.1) probably_damaging(0.998) TCGA-BR-8060-01 1 165533027 165533027 C T LRRC52 Missense_Mutation p.T303M 0.63 tolerated_low_confidence(0.16) benign(0.003) TCGA-BR-8060-01 1 168278066 168278066 A G TBX19 Missense_Mutation p.S335G 0.16 tolerated(0.43) benign(0.002) TCGA-BR-8060-01 1 209800302 209800302 G T LAMB3 Silent p.R503R 0.19 TCGA-BR-8060-01 1 216062312 216062312 T G USH2A Missense_Mutation p.N2560T 0.26 probably_damaging(0.982) TCGA-BR-8060-01 1 217793711 217793711 G A GPATCH2 Missense_Mutation p.R63C 0.30 deleterious(0) probably_damaging(0.999) TCGA-BR-8060-01 1 227268710 227268710 A T CDC42BPA Silent p.T788T 0.14 TCGA-BR-8060-01 1 228481873 228481873 G C OBSCN Missense_Mutation p.E4147Q 0.10 possibly_damaging(0.631) TCGA-BR-8060-01 1 229772258 229772258 C T URB2 Missense_Mutation p.P633L 0.15 tolerated(0.05) benign(0.002) TCGA-BR-8060-01 1 235969870 235969870 T C LYST Missense_Mutation p.T856A 0.78 tolerated_low_confidence(0.71) benign(0.019) TCGA-BR-8060-01 1 248437048 248437048 T C OR2T33 Silent p.Q23Q 0.21 TCGA-BR-8060-01 1 31188993 31188993 G A MATN1 Missense_Mutation p.R324C 0.18 deleterious(0) probably_damaging(0.977) TCGA-BR-8060-01 1 7151392 7151392 A G CAMTA1 Missense_Mutation p.E88G 0.14 deleterious(0.01) probably_damaging(0.985) TCGA-BR-8060-01 1 89250396 89250396 G T PKN2 Missense_Mutation p.V354F 0.15 tolerated(0.17) benign(0.008) TCGA-BR-8060-01 1 89318807 89318807 C T GTF2B 3'UTR 0.48 TCGA-BR-8060-01 1 93622015 93622015 T C TMED5 Missense_Mutation p.M105V 0.35 tolerated(0.07) benign(0.036) TCGA-BR-8060-01 20 11904024 11904024 G T BTBD3 Nonsense_Mutation p.E427* 0.08 TCGA-BR-8060-01 20 18794654 18794654 A C SCP2D1 Missense_Mutation p.K65N 0.16 deleterious(0) probably_damaging(1) TCGA-BR-8060-01 20 30414609 30414609 C T MYLK2 Silent p.G364G 0.06 TCGA-BR-8060-01 20 32378892 32378892 C T ZNF341 Missense_Mutation p.R705C 0.13 deleterious(0) possibly_damaging(0.799) TCGA-BR-8060-01 20 36625324 36625324 T C TTI1 Missense_Mutation p.D942G 0.33 deleterious(0) probably_damaging(0.992) TCGA-BR-8060-01 20 36870174 36870174 A G KIAA1755 Missense_Mutation p.M120T 0.18 tolerated(1) benign(0.002) TCGA-BR-8060-01 20 372101 372101 C A TRIB3 Silent p.I154I 0.08 TCGA-BR-8060-01 20 3732898 3732898 G A HSPA12B 3'UTR 0.69 TCGA-BR-8060-01 20 40143545 40143545 T G CHD6 Silent p.R201R 0.17 TCGA-BR-8060-01 20 42194925 42194925 G A SGK2 5'UTR 0.08 TCGA-BR-8060-01 20 43836128 43836128 T C SEMG1 Missense_Mutation p.S64P 0.06 tolerated(0.25) probably_damaging(0.996) TCGA-BR-8060-01 20 43945699 43945699 G C RBPJL 3'UTR 0.08 TCGA-BR-8060-01 20 50140514 50140514 G A NFATC2 Missense_Mutation p.P89L 0.21 tolerated(0.65) benign(0.148) TCGA-BR-8060-01 20 60575623 60575623 T C TAF4 Missense_Mutation p.R881G 0.34 probably_damaging(0.985) TCGA-BR-8060-01 21 43557706 43557706 C T UMODL1 Silent p.F1439F 0.23 TCGA-BR-8060-01 21 47931405 47931405 C T DIP2A Missense_Mutation p.A327V 0.27 tolerated(1) benign(0.001) TCGA-BR-8060-01 22 17072063 17072063 C G CCT8L2 Missense_Mutation p.V460L 0.30 tolerated(0.07) possibly_damaging(0.762) TCGA-BR-8060-01 22 17662401 17662401 T A CECR1 Missense_Mutation p.K503M 0.60 deleterious(0.03) benign(0.022) TCGA-BR-8060-01 22 24726243 24726243 G T SPECC1L Missense_Mutation p.R747L 0.22 deleterious(0) probably_damaging(0.998) TCGA-BR-8060-01 22 31524073 31524073 C G INPP5J Intron 0.94 TCGA-BR-8060-01 22 37334080 37334080 T G CSF2RB Missense_Mutation p.L744V 0.21 tolerated(0.28) benign(0.052) TCGA-BR-8060-01 22 37334118 37334118 A G CSF2RB Silent p.P756P 0.37 TCGA-BR-8060-01 2 10269026 10269026 C G RRM2 Missense_Mutation p.P344A 0.24 deleterious_low_confidence(0.03) probably_damaging(0.998) TCGA-BR-8060-01 2 114004419 114004419 C T PAX8 Missense_Mutation p.V35I 0.22 deleterious(0.01) probably_damaging(0.979) TCGA-BR-8060-01 2 118582244 118582244 A C DDX18 Missense_Mutation p.D389A 0.24 deleterious(0.02) benign(0.168) TCGA-BR-8060-01 2 125405355 125405355 G A CNTNAP5 Missense_Mutation p.V632M 0.14 tolerated(0.1) benign(0.056) TCGA-BR-8060-01 2 12880833 12880833 G A TRIB2 Silent p.S315S 0.30 TCGA-BR-8060-01 2 133541340 133541340 A G NCKAP5 Missense_Mutation p.V1015A 0.17 tolerated(0.64) benign(0.013) TCGA-BR-8060-01 2 133541966 133541966 C A NCKAP5 Missense_Mutation p.R806S 0.48 deleterious(0) possibly_damaging(0.901) TCGA-BR-8060-01 2 139428996 139428996 A G NXPH2 Silent p.T97T 0.20 TCGA-BR-8060-01 2 160035442 160035442 G A TANC1 Missense_Mutation p.V760M 0.27 deleterious(0.02) benign(0.406) TCGA-BR-8060-01 2 174820220 174820220 A G SP3 Silent p.P340P 0.22 TCGA-BR-8060-01 2 179647007 179647007 T G TTN Missense_Mutation p.Q1104H 0.22 TCGA-BR-8060-01 2 190531620 190531620 G A ASNSD1 Silent p.E254E 0.17 TCGA-BR-8060-01 2 218925585 218925585 A T CXCR2P1 RNA 0.15 TCGA-BR-8060-01 2 219247696 219247696 C A SLC11A1 Silent p.P7P 0.11 TCGA-BR-8060-01 2 220437172 220437172 C T INHA Missense_Mutation p.R26W 0.25 deleterious(0) probably_damaging(0.997) TCGA-BR-8060-01 2 231109728 231109728 G C SP140 Missense_Mutation p.Q199H 0.13 tolerated(0.94) benign(0.006) TCGA-BR-8060-01 2 231112742 231112742 A T SP140 Missense_Mutation p.K285M 0.17 tolerated(0.06) benign(0.334) TCGA-BR-8060-01 2 27850634 27850634 A G CCDC121 Silent p.A173A 0.17 TCGA-BR-8060-01 2 31625920 31625920 T C XDH Missense_Mutation p.K64R 0.29 tolerated(0.29) benign(0.072) TCGA-BR-8060-01 2 31805911 31805911 A C SRD5A2 RNA 0.26 TCGA-BR-8060-01 2 37473231 37473231 G A NDUFAF7 Missense_Mutation p.D277N 0.21 deleterious(0.01) possibly_damaging(0.456) TCGA-BR-8060-01 2 95494945 95494945 T C ANKRD20A8P Splice_Site 0.18 TCGA-BR-8060-01 2 98809371 98809371 C G VWA3B Missense_Mutation p.L493V 0.24 deleterious(0) probably_damaging(0.927) TCGA-BR-8060-01 3 112357931 112357931 C T CCDC80 Silent p.Q274Q 0.04 TCGA-BR-8060-01 3 119887179 119887179 T G GPR156 Missense_Mutation p.K382T 0.45 deleterious(0) probably_damaging(0.999) TCGA-BR-8060-01 3 133341985 133341985 T C TOPBP1 Missense_Mutation p.N1043S 0.15 tolerated(0.47) benign(0.001) TCGA-BR-8060-01 3 148575294 148575294 C G CPB1 Silent p.T344T 0.08 TCGA-BR-8060-01 3 148763879 148763879 G C HLTF Missense_Mutation p.A687G 0.40 tolerated(0.31) benign(0.4) TCGA-BR-8060-01 3 148917637 148917637 C T CP Missense_Mutation p.A455T 0.08 deleterious(0.01) possibly_damaging(0.463) TCGA-BR-8060-01 3 169496663 169496663 C A MYNN Missense_Mutation p.S125Y 0.11 deleterious(0.03) probably_damaging(0.972) TCGA-BR-8060-01 3 169802121 169802121 T A GPR160 Missense_Mutation p.C121S 0.12 tolerated(0.2) benign(0.188) TCGA-BR-8060-01 3 169802572 169802572 C A GPR160 Missense_Mutation p.A271E 0.15 deleterious(0) probably_damaging(0.999) TCGA-BR-8060-01 3 19974904 19974904 C T EFHB Missense_Mutation p.D203N 0.27 tolerated_low_confidence(0.07) possibly_damaging(0.448) TCGA-BR-8060-01 3 49050374 49050374 C T WDR6 Silent p.A499A 0.25 TCGA-BR-8060-01 3 49138789 49138789 T G QARS Missense_Mutation p.K292T 0.29 deleterious(0.01) probably_damaging(0.967) TCGA-BR-8060-01 3 49450044 49450044 A C TCTA Missense_Mutation p.N62T 0.31 tolerated(0.21) benign(0.012) TCGA-BR-8060-01 3 49680221 49680221 A C BSN Missense_Mutation p.K385T 0.11 unknown(0) TCGA-BR-8060-01 3 49759702 49759719 GCCGCTCAGGCTGCTTCT - GMPPB In_Frame_Del p.Q238_R243del 0.23 TCGA-BR-8060-01 3 50289850 50289850 C T GNAI2 Silent p.Y61Y 0.42 TCGA-BR-8060-01 3 9711163 9711163 G C MTMR14 Missense_Mutation p.D181H 0.12 deleterious(0.01) probably_damaging(0.996) TCGA-BR-8060-01 3 9934635 9934635 C G JAGN1 Nonsense_Mutation p.Y42* 0.26 TCGA-BR-8060-01 4 100205900 100205900 G A ADH1A Missense_Mutation p.P107L 0.14 deleterious(0.02) probably_damaging(0.961) TCGA-BR-8060-01 4 104065688 104065688 A T CENPE Missense_Mutation p.L1649M 0.26 possibly_damaging(0.866) TCGA-BR-8060-01 4 114161712 114161712 G A ANK2 Silent p.R255R 0.19 TCGA-BR-8060-01 4 119947892 119947892 C T SYNPO2 Missense_Mutation p.A123V 0.49 tolerated(0.15) benign(0.367) TCGA-BR-8060-01 4 123245586 123245586 C A KIAA1109 Missense_Mutation p.A3600D 0.44 probably_damaging(0.979) TCGA-BR-8060-01 4 134072302 134072302 A T PCDH10 Missense_Mutation p.N336I 0.17 tolerated(0.11) possibly_damaging(0.905) TCGA-BR-8060-01 4 16504145 16504145 A C LDB2 3'UTR 0.27 TCGA-BR-8060-01 4 175750018 175750018 C T GLRA3 5'UTR 0.44 TCGA-BR-8060-01 4 175897095 175897095 C T ADAM29 Missense_Mutation p.A140V 0.53 tolerated(0.3) benign(0.065) TCGA-BR-8060-01 4 654272 654272 G A PDE6B Missense_Mutation p.G495E 0.45 tolerated(0.46) possibly_damaging(0.461) TCGA-BR-8060-01 4 88055782 88055782 A G AFF1 Silent p.T1157T 0.23 TCGA-BR-8060-01 4 88731868 88731868 G A IBSP Silent p.T119T 0.23 TCGA-BR-8060-01 5 112327904 112327904 C A DCP2 Missense_Mutation p.P98T 0.43 deleterious(0) probably_damaging(1) TCGA-BR-8060-01 5 114878977 114878977 C A FEM1C Missense_Mutation p.G72C 0.16 deleterious(0) probably_damaging(1) TCGA-BR-8060-01 5 133481806 133481806 G C TCF7 Intron 0.32 TCGA-BR-8060-01 5 13735305 13735305 A C DNAH5 Missense_Mutation p.L3899R 0.13 possibly_damaging(0.766) TCGA-BR-8060-01 5 140182103 140182103 G A PCDHA3 Missense_Mutation p.V441M 0.22 tolerated_low_confidence(0.09) possibly_damaging(0.844) TCGA-BR-8060-01 5 140432258 140432258 T G PCDHB1 Silent p.S401S 0.21 TCGA-BR-8060-01 5 140731706 140731706 G A PCDHGB1 Missense_Mutation p.A627T 0.19 tolerated(0.1) possibly_damaging(0.902) TCGA-BR-8060-01 5 140788957 140788957 T G PCDHGB6 Silent p.S396S 0.25 TCGA-BR-8060-01 5 140812194 140812194 C T PCDHGA12 Missense_Mutation p.T623M 0.41 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-BR-8060-01 5 14359545 14359545 G A TRIO Missense_Mutation p.E766K 0.10 probably_damaging(0.955) TCGA-BR-8060-01 5 156346523 156346523 A C TIMD4 Missense_Mutation p.V361G 0.22 deleterious(0.01) possibly_damaging(0.622) TCGA-BR-8060-01 5 15935343 15935343 C T FBXL7 Intron 0.10 TCGA-BR-8060-01 5 167645910 167645910 A T TENM2 Missense_Mutation p.T1672S 0.11 tolerated(0.13) benign(0.011) TCGA-BR-8060-01 5 218486 218486 G A SDHA Missense_Mutation p.G6S 0.15 tolerated_low_confidence(0.66) benign(0.002) TCGA-BR-8060-01 5 35957327 35957327 C T UGT3A1 Silent p.V346V 0.09 TCGA-BR-8060-01 5 43535034 43535034 C T PAIP1 Missense_Mutation p.R373Q 0.10 tolerated(0.09) benign(0.403) TCGA-BR-8060-01 5 55083777 55083777 C A DDX4 Missense_Mutation p.T374N 0.08 deleterious(0) probably_damaging(1) TCGA-BR-8060-01 6 10775584 10775584 A G MAK Missense_Mutation p.L525P 0.24 tolerated(0.06) benign(0.372) TCGA-BR-8060-01 6 125584086 125584086 A C TPD52L1 Missense_Mutation p.K198T 0.08 tolerated_low_confidence(0.18) benign(0) TCGA-BR-8060-01 6 143095786 143095786 T C HIVEP2 Silent p.Q30Q 0.36 TCGA-BR-8060-01 6 25777168 25777168 T G SLC17A4 Missense_Mutation p.F417V 0.20 tolerated(0.58) benign(0.301) TCGA-BR-8060-01 6 26033364 26033364 C T HIST1H2AB 3'UTR 0.14 TCGA-BR-8060-01 6 26156631 26156631 G T HIST1H1E Missense_Mutation p.A5S 0.04 deleterious(0.02) possibly_damaging(0.739) TCGA-BR-8060-01 6 26247001 26247001 A G HIST1H4G Missense_Mutation p.Y69H 0.27 deleterious(0.02) benign(0.153) TCGA-BR-8060-01 6 27419676 27419676 T C ZNF184 Silent p.G554G 0.13 TCGA-BR-8060-01 6 27419677 27419677 C T ZNF184 Missense_Mutation p.G554E 0.12 deleterious(0.03) probably_damaging(1) TCGA-BR-8060-01 6 28473481 28473481 T A GPX6 Missense_Mutation p.K153M 0.13 deleterious(0) probably_damaging(1) TCGA-BR-8060-01 6 29323204 29323204 A C OR5V1 Missense_Mutation p.F257V 0.26 tolerated(0.1) probably_damaging(1) TCGA-BR-8060-01 6 51524277 51524277 T C PKHD1 Silent p.G3549G 0.24 TCGA-BR-8060-01 6 56362252 56362252 C T DST Silent p.T4093T 0.49 TCGA-BR-8060-01 6 70064133 70064133 T A BAI3 Missense_Mutation p.D1156E 0.07 tolerated(0.25) benign(0.031) TCGA-BR-8060-01 6 73108716 73108716 A G RIMS1 Missense_Mutation p.R1594G 0.35 deleterious(0) probably_damaging(0.979) TCGA-BR-8060-01 7 100682331 100682331 C T MUC17 Missense_Mutation p.P2545L 0.46 benign(0.007) TCGA-BR-8060-01 7 102079535 102079535 G A ORAI2 Silent p.S44S 0.20 TCGA-BR-8060-01 7 104782887 104782887 C T SRPK2 Missense_Mutation p.E371K 0.17 tolerated(0.42) probably_damaging(0.979) TCGA-BR-8060-01 7 108119793 108119793 C T PNPLA8 Missense_Mutation p.A637T 0.53 deleterious(0.03) possibly_damaging(0.728) TCGA-BR-8060-01 7 21551028 21551028 G A SP4 3'UTR 0.33 TCGA-BR-8060-01 7 37890031 37890031 T C NME8 Silent p.L29L 0.30 TCGA-BR-8060-01 7 41729891 41729891 G A INHBA Missense_Mutation p.A213V 0.58 tolerated(1) benign(0.047) TCGA-BR-8060-01 7 64023334 64023334 T C ZNF680 5'UTR 0.15 TCGA-BR-8060-01 7 73927245 73927245 G A GTF2IRD1 Missense_Mutation p.G70E 0.17 deleterious(0) probably_damaging(0.999) TCGA-BR-8060-01 7 90613530 90613530 C G CDK14 Missense_Mutation p.Q321E 0.19 tolerated(0.72) benign(0.013) TCGA-BR-8060-01 7 94989405 94989405 C T PON3 Silent p.R315R 0.24 TCGA-BR-8060-01 7 98491433 98491433 G A TRRAP Missense_Mutation p.E127K 0.10 benign(0.292) TCGA-BR-8060-01 8 104934010 104934010 T G RIMS2 Missense_Mutation p.S732A 0.22 deleterious_low_confidence(0.01) probably_damaging(0.983) TCGA-BR-8060-01 8 133141450 133141450 G A KCNQ3 3'UTR 0.07 TCGA-BR-8060-01 8 19362710 19362710 A G CSGALNACT1 Splice_Site p.X212_splice 0.37 TCGA-BR-8060-01 8 27319266 27319266 C T CHRNA2 Silent p.K490K 0.23 TCGA-BR-8060-01 8 30700514 30700514 A G TEX15 Missense_Mutation p.L2007P 0.33 deleterious(0) probably_damaging(0.99) TCGA-BR-8060-01 8 35631942 35631942 C T UNC5D Silent p.P868P 0.19 TCGA-BR-8060-01 8 37917539 37917539 G C EIF4EBP1 3'UTR 0.28 TCGA-BR-8060-01 8 48815352 48815352 C T PRKDC Missense_Mutation p.G1016R 0.45 probably_damaging(0.995) TCGA-BR-8060-01 8 6599219 6599219 A G AGPAT5 Missense_Mutation p.N178S 0.27 tolerated(0.16) benign(0.032) TCGA-BR-8060-01 9 107288534 107288534 T C OR13C4 Silent p.%3D 0.45 TCGA-BR-8060-01 9 137687112 137687112 C T COL5A1 Missense_Mutation p.P917L 0.30 unknown(0) TCGA-BR-8060-01 9 137704501 137704501 T G COL5A1 Silent p.A1265A 0.26 TCGA-BR-8060-01 9 137775149 137775149 A G FCN2 Silent p.G72G 0.30 TCGA-BR-8060-01 9 140242576 140242576 C T EXD3 Missense_Mutation p.G649S 0.38 deleterious(0) probably_damaging(1) TCGA-BR-8060-01 9 14747262 14747262 C A FREM1 Missense_Mutation p.Q2003H 0.28 tolerated(0.12) benign(0.009) TCGA-BR-8060-01 9 19786705 19786705 A C SLC24A2 Missense_Mutation p.F54V 0.07 tolerated_low_confidence(0.1) benign(0.146) TCGA-BR-8060-01 9 33386446 33386446 A G AQP7 Missense_Mutation p.L121P 0.22 deleterious(0) probably_damaging(0.992) TCGA-BR-8060-01 9 35043516 35043516 G C C9orf131 Missense_Mutation p.G297A 0.35 tolerated(0.21) benign(0.225) TCGA-BR-8060-01 9 72046199 72046199 C T APBA1 3'UTR 0.75 TCGA-BR-8060-01 9 74840638 74840638 T C GDA Silent p.L254L 0.06 TCGA-BR-8060-01 X 106957906 106957906 A T TSC22D3 Missense_Mutation p.L149Q 0.68 deleterious(0) probably_damaging(0.999) TCGA-BR-8060-01 X 136648822 136648822 G A ZIC3 5'UTR 0.36 TCGA-BR-8060-01 X 13726919 13726919 T G RAB9A Silent p.V18V 0.23 TCGA-BR-8060-01 X 150349066 150349066 C T GPR50 Silent p.R337R 0.63 TCGA-BR-8060-01 X 152158658 152158658 A C PNMA5 3'UTR 0.34 TCGA-BR-8060-01 X 2825510 2825510 G T ARSD Silent p.P528P 0.68 TCGA-BR-8060-01 X 29414374 29414374 G A IL1RAPL1 Splice_Site p.X121_splice 0.20 TCGA-BR-8060-01 X 30870904 30870904 C T TAB3 Silent p.A567A 0.59 TCGA-BR-8060-01 X 32364102 32364102 C T DMD Silent p.K1848K 0.29 TCGA-BR-8060-01 X 48934166 48934166 T C WDR45 Missense_Mutation p.K121R 0.29 tolerated(0.74) benign(0.002) TCGA-BR-8060-01 X 50090653 50090653 C A CCNB3 Missense_Mutation p.T1280N 0.24 deleterious(0) probably_damaging(1) TCGA-BR-8060-01 X 78216599 78216599 G A P2RY10 Silent p.A194A 0.63 TCGA-BR-8060-01 X 92927241 92927241 T G NAP1L3 Missense_Mutation p.S355R 0.45 deleterious(0) probably_damaging(0.928) TCGA-BR-8077-01 10 131665478 131665478 G A EBF3 Silent p.G313G 0.52 TCGA-BR-8077-01 10 17216575 17216575 G T TRDMT1 Missense_Mutation p.T50K 0.16 tolerated(0.07) possibly_damaging(0.641) TCGA-BR-8077-01 10 71874730 71874730 C T AIFM2 Missense_Mutation p.V306M 0.42 deleterious(0.01) possibly_damaging(0.587) TCGA-BR-8077-01 10 75878000 75878000 G A VCL 3'UTR 0.36 TCGA-BR-8077-01 11 101849101 101849101 C T KIAA1377 Nonsense_Mutation p.R957* 0.08 TCGA-BR-8077-01 11 104819260 104819260 G A CASP4 Missense_Mutation p.H309Y 0.17 deleterious(0.01) probably_damaging(0.924) TCGA-BR-8077-01 11 117780642 117780642 C T TMPRSS13 Missense_Mutation p.A330T 0.23 tolerated(0.4) benign(0.006) TCGA-BR-8077-01 11 122817220 122817220 C G C11orf63 Missense_Mutation p.S550C 0.06 deleterious(0) probably_damaging(0.982) TCGA-BR-8077-01 11 129725628 129725628 C T TMEM45B Silent p.H137H 0.20 TCGA-BR-8077-01 11 58477426 58477426 G A GLYAT Missense_Mutation p.P235L 0.16 deleterious(0.02) possibly_damaging(0.751) TCGA-BR-8077-01 11 601629 601629 A T PHRF1 Missense_Mutation p.K360N 0.23 tolerated(0.06) benign(0.067) TCGA-BR-8077-01 11 61960902 61960902 A T SCGB1D1 3'UTR 0.30 TCGA-BR-8077-01 11 63666571 63666571 A C MARK2 Missense_Mutation p.R174S 0.19 deleterious(0) probably_damaging(0.996) TCGA-BR-8077-01 11 65635413 65635413 G C EFEMP2 Missense_Mutation p.I363M 0.12 tolerated(0.37) probably_damaging(0.999) TCGA-BR-8077-01 11 65635426 65635426 T C EFEMP2 Missense_Mutation p.D359G 0.12 deleterious(0) probably_damaging(0.91) TCGA-BR-8077-01 11 66639309 66639309 G A PC Missense_Mutation p.T57M 0.32 deleterious(0.03) probably_damaging(0.967) TCGA-BR-8077-01 11 74168442 74168442 T A KCNE3 Missense_Mutation p.N56I 0.12 deleterious(0) probably_damaging(0.999) TCGA-BR-8077-01 11 760142 760142 C T TALDO1 Missense_Mutation p.A117V 0.11 deleterious(0.04) benign(0.149) TCGA-BR-8077-01 12 102010978 102010978 A C MYBPC1 Splice_Site p.X21_splice 0.25 TCGA-BR-8077-01 12 55759444 55759444 C A OR6C75 Missense_Mutation p.Q184K 0.48 tolerated_low_confidence(0.15) probably_damaging(0.991) TCGA-BR-8077-01 12 70704765 70704765 T C CNOT2 Missense_Mutation p.S47P 0.07 tolerated_low_confidence(0.32) benign(0.002) TCGA-BR-8077-01 13 46357872 46357872 C T SIAH3 Silent p.A152A 0.61 TCGA-BR-8077-01 14 101522590 101522590 G A MIR323B RNA 0.15 TCGA-BR-8077-01 14 23415837 23415837 A G HAUS4 Missense_Mutation p.L330P 0.16 deleterious(0) probably_damaging(0.989) TCGA-BR-8077-01 14 23532239 23532239 T G ACIN1 Missense_Mutation p.K986Q 0.40 possibly_damaging(0.573) TCGA-BR-8077-01 14 33290766 33290766 G A AKAP6 Silent p.L1249L 0.21 TCGA-BR-8077-01 14 64194098 64194098 G A SGPP1 Missense_Mutation p.P189S 0.62 deleterious(0.01) possibly_damaging(0.901) TCGA-BR-8077-01 14 64628976 64628976 A C SYNE2 Silent p.P5427P 0.24 TCGA-BR-8077-01 14 92343836 92343836 T C FBLN5 Missense_Mutation p.M394V 0.51 tolerated(0.08) benign(0.007) TCGA-BR-8077-01 14 95056501 95056501 G A SERPINA5 Missense_Mutation p.R248Q 0.14 tolerated(0.38) benign(0.017) TCGA-BR-8077-01 15 23811198 23811198 G A MKRN3 Missense_Mutation p.R90Q 0.35 tolerated(0.05) possibly_damaging(0.701) TCGA-BR-8077-01 15 23811962 23811962 C T MKRN3 Missense_Mutation p.R345C 0.35 deleterious(0.03) probably_damaging(1) TCGA-BR-8077-01 15 25304861 25304861 C T SNORD116-3 3'Flank 0.54 TCGA-BR-8077-01 15 25425692 25425692 A - SNORD115-6 RNA 0.11 TCGA-BR-8077-01 15 35045438 35045438 G A GJD2 Silent p.R69R 0.27 TCGA-BR-8077-01 15 40947114 40947114 C A CASC5 Missense_Mutation p.F2167L 0.23 tolerated(1) benign(0) TCGA-BR-8077-01 15 41067260 41067260 G C DNAJC17 Missense_Mutation p.S190C 0.10 deleterious(0.02) possibly_damaging(0.841) TCGA-BR-8077-01 15 81230194 81230194 C T KIAA1199 Missense_Mutation p.S1094L 0.38 tolerated(0.54) probably_damaging(0.997) TCGA-BR-8077-01 15 91037964 91037964 G A IQGAP1 Missense_Mutation p.E1550K 0.14 tolerated(0.41) benign(0.012) TCGA-BR-8077-01 15 93007503 93007503 A G ST8SIA2 Missense_Mutation p.Y339C 0.13 probably_damaging(0.99) TCGA-BR-8077-01 16 16255323 16255323 A C ABCC6 Missense_Mutation p.V1202G 0.16 deleterious(0) possibly_damaging(0.469) TCGA-BR-8077-01 16 16255324 16255324 C G ABCC6 Missense_Mutation p.V1202L 0.19 deleterious(0) possibly_damaging(0.665) TCGA-BR-8077-01 16 16255325 16255325 G A ABCC6 Silent p.L1201L 0.16 TCGA-BR-8077-01 16 24581590 24581590 G A RBBP6 Silent p.R1193R 0.12 TCGA-BR-8077-01 16 820288 820288 G A MSLNL Silent p.S899S 0.35 TCGA-BR-8077-01 16 84693458 84693458 G A KLHL36 Silent p.A410A 0.51 TCGA-BR-8077-01 17 39411934 39411934 C A KRTAP9-9 Missense_Mutation p.S99R 0.04 deleterious(0.04) unknown(0) TCGA-BR-8077-01 17 47076502 47076502 G C IGF2BP1 Missense_Mutation p.E69D 0.12 deleterious(0.04) benign(0.104) TCGA-BR-8077-01 17 47656665 47656665 C T NXPH3 3'UTR 0.50 TCGA-BR-8077-01 17 56499635 56499636 - A HSF5 3'UTR 0.19 TCGA-BR-8077-01 17 58040311 58040311 C T RNFT1 Missense_Mutation p.A131T 0.27 tolerated(0.63) benign(0.002) TCGA-BR-8077-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.68 deleterious(0) probably_damaging(0.997) TCGA-BR-8077-01 17 79095615 79095615 G A AATK Silent p.G707G 0.25 TCGA-BR-8077-01 17 8398465 8398466 - GTA MYH10 In_Frame_Ins p.L1348dup 0.30 TCGA-BR-8077-01 18 56892756 56892758 TCT - GRP In_Frame_Del p.S60del 0.20 TCGA-BR-8077-01 19 14517256 14517256 C G CD97 Missense_Mutation p.F645L 0.40 tolerated(0.16) probably_damaging(1) TCGA-BR-8077-01 19 30935864 30935864 G C ZNF536 Silent p.A465A 0.08 TCGA-BR-8077-01 19 41627980 41627980 C T CYP2F1 Missense_Mutation p.S255L 0.38 deleterious(0.02) benign(0.037) TCGA-BR-8077-01 19 43683056 43683056 A C PSG5 Intron 0.04 TCGA-BR-8077-01 19 51273919 51273919 G A GPR32 Missense_Mutation p.R21H 0.38 tolerated(0.55) benign(0) TCGA-BR-8077-01 19 53762763 53762763 A C VN1R2 Missense_Mutation p.S379R 0.28 tolerated(0.36) benign(0.001) TCGA-BR-8077-01 19 55645256 55645256 A C TNNT1 Missense_Mutation p.F264V 0.20 tolerated(0.42) probably_damaging(0.989) TCGA-BR-8077-01 19 57326272 57326272 C T PEG3 Missense_Mutation p.E1180K 0.55 tolerated(0.14) possibly_damaging(0.572) TCGA-BR-8077-01 1 151413529 151413529 A T POGZ Missense_Mutation p.V53E 0.28 tolerated(0.17) benign(0.055) TCGA-BR-8077-01 1 153410796 153410796 G A S100A7L2 Missense_Mutation p.P15S 0.22 tolerated(0.58) benign(0.031) TCGA-BR-8077-01 1 161192255 161192255 C T AL590714.1 Missense_Mutation p.R64C 0.42 possibly_damaging(0.833) TCGA-BR-8077-01 1 169099314 169099314 C A ATP1B1 Missense_Mutation p.Q212K 0.24 tolerated(0.2) benign(0.007) TCGA-BR-8077-01 1 181546939 181546939 G A CACNA1E Missense_Mutation p.V184M 0.13 tolerated(0.11) possibly_damaging(0.867) TCGA-BR-8077-01 1 205901913 205901913 A T SLC26A9 Missense_Mutation p.L98H 0.07 deleterious(0) probably_damaging(0.999) TCGA-BR-8077-01 1 209933473 209933473 G A TRAF3IP3 Missense_Mutation p.R30H 0.07 tolerated(0.16) probably_damaging(0.999) TCGA-BR-8077-01 1 220091652 220091652 C T SLC30A10 Silent p.E301E 0.08 TCGA-BR-8077-01 1 235377337 235377337 C T ARID4B Missense_Mutation p.E530K 0.27 tolerated(0.24) benign(0.118) TCGA-BR-8077-01 1 33318765 33318765 G A S100PBP Silent p.T370T 0.23 TCGA-BR-8077-01 1 39776014 39776014 T G MACF1 Missense_Mutation p.F1010C 0.29 probably_damaging(0.989) TCGA-BR-8077-01 1 89329732 89329732 G C GTF2B Missense_Mutation p.P64A 0.25 deleterious(0.04) benign(0.12) TCGA-BR-8077-01 20 1517875 1517875 G A SIRPD Missense_Mutation p.S168L 0.05 deleterious(0) possibly_damaging(0.602) TCGA-BR-8077-01 20 49197803 49197803 A G PTPN1 Missense_Mutation p.M364V 0.05 tolerated(0.29) benign(0.001) TCGA-BR-8077-01 20 61542508 61542508 C T DIDO1 Missense_Mutation p.D153N 0.48 probably_damaging(0.998) TCGA-BR-8077-01 20 62046361 62046361 C G KCNQ2 Missense_Mutation p.E474Q 0.13 deleterious(0.01) possibly_damaging(0.7) TCGA-BR-8077-01 21 22656515 22656515 G T NCAM2 Silent p.A44A 0.36 TCGA-BR-8077-01 22 37328890 37328890 G A CSF2RB Missense_Mutation p.E366K 0.25 tolerated(0.96) benign(0.004) TCGA-BR-8077-01 22 40754925 40754925 C T ADSL Silent p.C180C 0.51 TCGA-BR-8077-01 22 50717049 50717049 G A PLXNB2 Silent p.R1541R 0.42 TCGA-BR-8077-01 2 101635530 101635530 T G RPL31 3'UTR 0.43 TCGA-BR-8077-01 2 152483704 152483704 C G NEB Missense_Mutation p.D3387H 0.69 probably_damaging(1) TCGA-BR-8077-01 2 170072858 170072858 T C LRP2 Missense_Mutation p.K1911E 0.43 benign(0.033) TCGA-BR-8077-01 2 192246260 192246260 C A MYO1B Missense_Mutation p.L420I 0.28 deleterious(0.03) probably_damaging(0.999) TCGA-BR-8077-01 2 196729342 196729342 C G DNAH7 Missense_Mutation p.G2346A 0.09 deleterious(0) probably_damaging(1) TCGA-BR-8077-01 2 198285091 198285091 C A SF3B1 Intron 0.50 TCGA-BR-8077-01 2 208611776 208611776 C T CCNYL1 Silent p.Y164Y 0.24 TCGA-BR-8077-01 2 39025360 39025360 T C DHX57 3'UTR 0.11 TCGA-BR-8077-01 2 45620206 45620207 - T SRBD1 Frame_Shift_Ins p.I859Nfs*6 0.33 TCGA-BR-8077-01 2 55874501 55874501 C T PNPT1 Missense_Mutation p.R528H 0.11 deleterious(0.01) benign(0.112) TCGA-BR-8077-01 2 85571127 85571127 C A RETSAT Missense_Mutation p.G510W 0.36 deleterious(0) probably_damaging(0.99) TCGA-BR-8077-01 3 155649637 155649637 G C GMPS Missense_Mutation p.R548S 0.32 tolerated(0.17) benign(0.009) TCGA-BR-8077-01 4 1388392 1388392 G A CRIPAK Silent p.E31E 0.07 TCGA-BR-8077-01 4 1657119 1657119 G A FAM53A Silent p.G156G 0.17 TCGA-BR-8077-01 4 25256828 25256828 G A PI4K2B Missense_Mutation p.E189K 0.71 deleterious(0) probably_damaging(1) TCGA-BR-8077-01 5 108134020 108134020 T A FER Nonsense_Mutation p.L46* 0.17 TCGA-BR-8077-01 5 140250469 140250469 G A PCDHA11 Missense_Mutation p.R594H 0.13 tolerated_low_confidence(0.07) possibly_damaging(0.724) TCGA-BR-8077-01 5 176395935 176395935 A C UIMC1 Missense_Mutation p.V274G 0.05 deleterious(0) probably_damaging(0.954) TCGA-BR-8077-01 5 176395936 176395936 C T UIMC1 Missense_Mutation p.V274M 0.05 deleterious(0) probably_damaging(0.991) TCGA-BR-8077-01 5 26903778 26903778 C A CDH9 Missense_Mutation p.D323Y 0.04 deleterious(0) possibly_damaging(0.776) TCGA-BR-8077-01 5 35035360 35035360 G A AGXT2 Missense_Mutation p.A183V 0.56 tolerated(0.17) benign(0.021) TCGA-BR-8077-01 5 35806993 35806993 G A SPEF2 Missense_Mutation p.S1732N 0.14 tolerated(0.86) benign(0.003) TCGA-BR-8077-01 5 36037997 36037997 G A UGT3A2 Silent p.V399V 0.06 TCGA-BR-8077-01 5 54415675 54415675 C A CDC20B Silent p.V471V 0.17 TCGA-BR-8077-01 5 71757315 71757315 C G ZNF366 Missense_Mutation p.K3N 0.38 deleterious_low_confidence(0.04) benign(0.009) TCGA-BR-8077-01 5 90024493 90024493 G A GPR98 Missense_Mutation p.R3390K 0.30 benign(0) TCGA-BR-8077-01 6 111631175 111631175 C A REV3L Missense_Mutation p.D2975Y 0.09 deleterious(0) probably_damaging(1) TCGA-BR-8077-01 6 126176272 126176272 G C NCOA7 Missense_Mutation p.D53H 0.43 deleterious_low_confidence(0) possibly_damaging(0.678) TCGA-BR-8077-01 6 4937947 4937947 G T CDYL Missense_Mutation p.S366I 0.30 deleterious(0) probably_damaging(0.992) TCGA-BR-8077-01 6 84371281 84371281 A C SNAP91 Missense_Mutation p.L131W 0.31 deleterious(0) unknown(0) TCGA-BR-8077-01 7 107214184 107214184 G A DUS4L Missense_Mutation p.D92N 0.25 tolerated(1) benign(0.011) TCGA-BR-8077-01 7 142028543 142028543 T C TRBV6-1 Missense_Mutation p.F93L 0.16 deleterious(0.01) benign(0.444) TCGA-BR-8077-01 7 143027909 143027909 C T CLCN1 Missense_Mutation p.R300W 0.25 deleterious(0) possibly_damaging(0.539) TCGA-BR-8077-01 7 150648871 150648871 C T KCNH2 Missense_Mutation p.R537Q 0.17 deleterious(0) probably_damaging(0.946) TCGA-BR-8077-01 7 151805280 151805280 C T GALNT11 Silent p.V290V 0.05 TCGA-BR-8077-01 7 23571475 23571475 A C TRA2A 5'UTR 0.05 TCGA-BR-8077-01 7 30795204 30795204 C T INMT Missense_Mutation p.R177C 0.11 tolerated(0.05) possibly_damaging(0.628) TCGA-BR-8077-01 7 44191983 44191983 A C GCK Missense_Mutation p.F85V 0.08 deleterious(0.02) possibly_damaging(0.459) TCGA-BR-8077-01 7 95035535 95035535 C G PON2 Missense_Mutation p.D268H 0.07 deleterious(0.03) probably_damaging(0.995) TCGA-BR-8077-01 8 106815129 106815129 A G ZFPM2 Missense_Mutation p.Q940R 0.15 tolerated_low_confidence(0.37) possibly_damaging(0.48) TCGA-BR-8077-01 8 125990059 125990059 C T ZNF572 Missense_Mutation p.P517S 0.07 tolerated_low_confidence(0.21) benign(0.016) TCGA-BR-8077-01 8 12957702 12957702 T C DLC1 Missense_Mutation p.E715G 0.19 tolerated(0.08) possibly_damaging(0.58) TCGA-BR-8077-01 8 145731400 145731400 C T GPT Missense_Mutation p.A281V 0.25 tolerated(0.1) benign(0.305) TCGA-BR-8077-01 8 15397991 15397991 C T TUSC3 Missense_Mutation p.R18W 0.60 deleterious_low_confidence(0.02) unknown(0) TCGA-BR-8077-01 8 35541183 35541183 C T UNC5D Missense_Mutation p.T230I 0.25 deleterious(0.01) possibly_damaging(0.811) TCGA-BR-8077-01 8 55060008 55060008 C T MRPL15 Missense_Mutation p.P207L 0.26 deleterious(0.02) probably_damaging(0.95) TCGA-BR-8077-01 8 86360349 86360349 C G CA3 Missense_Mutation p.I250M 0.12 deleterious(0) benign(0.074) TCGA-BR-8077-01 8 91940518 91940518 G T NECAB1 Silent p.L228L 0.19 TCGA-BR-8077-01 9 124525898 124525898 G T DAB2IP Missense_Mutation p.V401L 0.21 deleterious(0) probably_damaging(0.994) TCGA-BR-8077-01 9 135202659 135202659 A C SETX Missense_Mutation p.C1442W 0.06 tolerated(0.18) possibly_damaging(0.825) TCGA-BR-8077-01 9 135202660 135202660 C T SETX Missense_Mutation p.C1442Y 0.07 tolerated(0.93) benign(0.275) TCGA-BR-8077-01 X 107412759 107412759 C A COL4A6 Silent p.G1220G 0.35 TCGA-BR-8077-01 X 114141785 114141785 T A HTR2C Missense_Mutation p.V395D 0.50 deleterious(0.05) benign(0.002) TCGA-BR-8077-01 X 125299259 125299259 C T DCAF12L2 Missense_Mutation p.V217M 0.52 tolerated(0.86) benign(0.184) TCGA-BR-8077-01 X 134025640 134025640 A G MOSPD1 Missense_Mutation p.L160S 0.30 tolerated(0.34) benign(0.005) TCGA-BR-8077-01 X 135314089 135314089 C T MAP7D3 Missense_Mutation p.V343M 0.14 tolerated(0.48) benign(0.025) TCGA-BR-8077-01 X 151303170 151303170 T G MAGEA10 Missense_Mutation p.K308T 0.22 deleterious(0) probably_damaging(0.972) TCGA-BR-8077-01 X 153716440 153716440 G A SLC10A3 Silent p.D280D 0.27 TCGA-BR-8077-01 X 47092439 47092439 G A USP11 Silent p.T42T 0.55 TCGA-BR-8077-01 X 66765885 66765885 A T AR Silent p.A299A 0.51 TCGA-BR-8077-01 X 72432992 72432992 G A NAP1L2 Missense_Mutation p.A446V 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.866) TCGA-BR-8077-01 X 72667379 72667379 C T CDX4 Missense_Mutation p.P97L 0.16 tolerated(0.17) possibly_damaging(0.704) TCGA-BR-8077-01 X 77529219 77529219 C T CYSLTR1 Missense_Mutation p.V9I 0.05 tolerated(0.24) benign(0.001) TCGA-BR-8078-01 10 100013355 100013355 C T LOXL4 Missense_Mutation p.R597H 0.35 deleterious(0) probably_damaging(0.995) TCGA-BR-8078-01 10 102256140 102256140 G A SEC31B Missense_Mutation p.R729W 0.22 tolerated(0.06) benign(0.003) TCGA-BR-8078-01 10 102762593 102762593 C - LZTS2 Frame_Shift_Del p.S102Afs*41 0.21 TCGA-BR-8078-01 10 103339944 103339944 G - POLL Intron 0.14 TCGA-BR-8078-01 10 103990294 103990294 A G PITX3 Missense_Mutation p.Y296H 0.33 deleterious(0) possibly_damaging(0.86) TCGA-BR-8078-01 10 104174761 104174761 G A PSD Missense_Mutation p.A328V 0.37 tolerated(0.17) benign(0.001) TCGA-BR-8078-01 10 105207210 105207210 C A CALHM2 Missense_Mutation p.R224L 0.32 tolerated(0.79) benign(0.146) TCGA-BR-8078-01 10 105361689 105361689 C - SH3PXD2A Frame_Shift_Del p.V1068Cfs*22 0.22 TCGA-BR-8078-01 10 106152048 106152048 A - CCDC147 Frame_Shift_Del p.I477* 0.22 TCGA-BR-8078-01 10 108489870 108489870 G T SORCS1 Missense_Mutation p.S321Y 0.06 deleterious(0.01) probably_damaging(0.993) TCGA-BR-8078-01 10 114905796 114905796 C T TCF7L2 Missense_Mutation p.T272M 0.24 deleterious(0.03) probably_damaging(0.999) TCGA-BR-8078-01 10 115891802 115891802 A G C10orf118 Silent p.N599N 0.34 TCGA-BR-8078-01 10 116887435 116887435 T - ATRNL1 Frame_Shift_Del p.F192Lfs*8 0.36 TCGA-BR-8078-01 10 119044515 119044515 G A PDZD8 Nonsense_Mutation p.Q577* 0.27 TCGA-BR-8078-01 10 120354633 120354633 C T PRLHR Missense_Mutation p.A42T 0.21 tolerated(0.66) benign(0.001) TCGA-BR-8078-01 10 122660586 122660586 A G WDR11 Missense_Mutation p.Q888R 0.23 tolerated(0.08) benign(0.186) TCGA-BR-8078-01 10 124608920 124608920 T - FAM24B Frame_Shift_Del p.N43Ifs*48 0.24 TCGA-BR-8078-01 10 127464267 127464267 G T MMP21 Missense_Mutation p.R42S 0.35 tolerated(0.43) benign(0.005) TCGA-BR-8078-01 10 129870413 129870413 C T PTPRE Nonsense_Mutation p.R467* 0.31 TCGA-BR-8078-01 10 133963536 133963536 C T JAKMIP3 Silent p.N666N 0.43 TCGA-BR-8078-01 10 133976761 133976761 G A JAKMIP3 Missense_Mutation p.A755T 0.33 tolerated(0.31) benign(0.025) TCGA-BR-8078-01 10 134218281 134218281 C - PWWP2B Frame_Shift_Del p.E95Rfs*91 0.28 TCGA-BR-8078-01 10 134752232 134752232 A G TTC40 Missense_Mutation p.S133P 0.21 deleterious(0) probably_damaging(1) TCGA-BR-8078-01 10 135125330 135125330 G A ZNF511 Missense_Mutation p.R222Q 0.30 tolerated(0.17) benign(0.091) TCGA-BR-8078-01 10 135350651 135350651 A G CYP2E1 Missense_Mutation p.D351G 0.34 deleterious(0) possibly_damaging(0.811) TCGA-BR-8078-01 10 18134079 18134079 T - MRC1 Intron 0.23 TCGA-BR-8078-01 10 18905144 18905144 G T NSUN6 Silent p.V130V 0.17 TCGA-BR-8078-01 10 18948547 18948547 G A ARL5B 5'UTR 0.29 TCGA-BR-8078-01 10 23257331 23257331 A T ARMC3 Nonsense_Mutation p.K277* 0.26 TCGA-BR-8078-01 10 24873307 24873307 T - ARHGAP21 3'UTR 0.25 TCGA-BR-8078-01 10 27434472 27434472 T C YME1L1 Silent p.G129G 0.30 TCGA-BR-8078-01 10 28233164 28233164 C - ARMC4 Frame_Shift_Del p.G577Vfs*9 0.29 TCGA-BR-8078-01 10 28343108 28343108 A - MPP7 Frame_Shift_Del p.F539Lfs*5 0.21 TCGA-BR-8078-01 10 29770534 29770534 G A SVIL Silent p.P1693P 0.35 TCGA-BR-8078-01 10 3172106 3172106 G - PFKP Frame_Shift_Del p.L596Sfs*27 0.27 TCGA-BR-8078-01 10 32150345 32150345 A G ARHGAP12 Missense_Mutation p.F309S 0.31 tolerated(0.43) benign(0) TCGA-BR-8078-01 10 32311825 32311826 - T KIF5B Frame_Shift_Ins p.M622Nfs*5 0.33 TCGA-BR-8078-01 10 35897009 35897009 C T GJD4 Missense_Mutation p.R190W 0.30 deleterious(0) probably_damaging(1) TCGA-BR-8078-01 10 38647309 38647309 C T HSD17B7P2 RNA 0.30 TCGA-BR-8078-01 10 45941064 45941064 C T ALOX5 Missense_Mutation p.R652C 0.31 deleterious(0) probably_damaging(1) TCGA-BR-8078-01 10 46999285 46999285 T G GPRIN2 Silent p.G135G 0.14 TCGA-BR-8078-01 10 47000142 47000142 C T GPRIN2 Missense_Mutation p.A421V 0.08 tolerated(0.3) benign(0.013) TCGA-BR-8078-01 10 50122058 50122058 C T LRRC18 Missense_Mutation p.R48H 0.41 deleterious(0) benign(0.108) TCGA-BR-8078-01 10 50820285 50820285 G A SLC18A3 Missense_Mutation p.R500H 0.26 tolerated(0.07) benign(0.002) TCGA-BR-8078-01 10 53458192 53458192 C T CSTF2T Missense_Mutation p.R373H 0.35 tolerated_low_confidence(0.13) probably_damaging(0.984) TCGA-BR-8078-01 10 5437355 5437355 C T TUBAL3 Missense_Mutation p.A111T 0.32 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-BR-8078-01 10 61014045 61014046 TA - FAM13C Intron 0.39 TCGA-BR-8078-01 10 6262768 6262768 C T PFKFB3 Silent p.N257N 0.19 TCGA-BR-8078-01 10 6266162 6266162 C T PFKFB3 Missense_Mutation p.R443W 0.20 possibly_damaging(0.846) TCGA-BR-8078-01 10 63191022 63191022 C T TMEM26 Silent p.L113L 0.23 TCGA-BR-8078-01 10 64966870 64966870 C T JMJD1C Missense_Mutation p.S1520N 0.29 tolerated(0.12) benign(0.013) TCGA-BR-8078-01 10 68138968 68138968 G A CTNNA3 Silent p.Y558Y 0.21 TCGA-BR-8078-01 10 70730038 70730038 C T DDX21 Missense_Mutation p.R440C 0.38 deleterious(0.01) probably_damaging(0.985) TCGA-BR-8078-01 10 70864040 70864040 A G SRGN 3'UTR 0.43 TCGA-BR-8078-01 10 71243576 71243576 G A TSPAN15 Missense_Mutation p.V76I 0.25 deleterious(0.01) probably_damaging(0.976) TCGA-BR-8078-01 10 71392706 71392706 T C C10orf35 Missense_Mutation p.V86A 0.27 tolerated(0.12) benign(0.183) TCGA-BR-8078-01 10 73053236 73053236 G A UNC5B Missense_Mutation p.R616H 0.28 tolerated(0.08) benign(0.244) TCGA-BR-8078-01 10 73115851 73115851 C T SLC29A3 Silent p.G208G 0.21 TCGA-BR-8078-01 10 73558151 73558151 G A CDH23 Silent p.T50T 0.23 TCGA-BR-8078-01 10 75277357 75277357 G T USP54 Missense_Mutation p.P943T 0.30 deleterious_low_confidence(0) benign(0.242) TCGA-BR-8078-01 10 75290072 75290072 G A USP54 Missense_Mutation p.R553C 0.22 deleterious(0) possibly_damaging(0.513) TCGA-BR-8078-01 10 75557339 75557339 G A ZSWIM8 Missense_Mutation p.R1213Q 0.25 deleterious(0.03) probably_damaging(0.927) TCGA-BR-8078-01 10 76788343 76788343 G A KAT6B Missense_Mutation p.R1254H 0.29 benign(0.009) TCGA-BR-8078-01 10 76789861 76789861 C T KAT6B Missense_Mutation p.P1760L 0.29 probably_damaging(0.999) TCGA-BR-8078-01 10 78844406 78844406 C T KCNMA1 Silent p.S504S 0.54 TCGA-BR-8078-01 10 79741973 79741973 C T POLR3A Missense_Mutation p.R1233Q 0.41 tolerated(0.21) benign(0.053) TCGA-BR-8078-01 10 86131826 86131826 A - CCSER2 Frame_Shift_Del p.N341Ifs*8 0.26 TCGA-BR-8078-01 10 86273259 86273259 G T CCSER2 Missense_Mutation p.G822V 0.26 deleterious(0) probably_damaging(0.999) TCGA-BR-8078-01 10 87898668 87898668 T A GRID1 Missense_Mutation p.M212L 0.28 tolerated(0.18) possibly_damaging(0.881) TCGA-BR-8078-01 10 88994221 88994221 A G NUTM2A Missense_Mutation p.H798R 0.30 tolerated(0.36) benign(0.13) TCGA-BR-8078-01 10 89720812 89720812 A - PTEN Frame_Shift_Del p.N323Mfs*21 0.08 TCGA-BR-8078-01 10 90682146 90682146 A - STAMBPL1 Frame_Shift_Del p.K405Rfs*21 0.59 TCGA-BR-8078-01 10 91098638 91098638 C T IFIT3 Nonsense_Mutation p.Q76* 0.33 TCGA-BR-8078-01 10 91497987 91497987 A - KIF20B Frame_Shift_Del p.N1092Mfs*11 0.29 TCGA-BR-8078-01 10 93756247 93756247 T - BTAF1 Frame_Shift_Del p.L1146Wfs*27 0.24 TCGA-BR-8078-01 10 93798 93798 G A TUBB8 Silent p.T178T 0.28 TCGA-BR-8078-01 10 94818016 94818016 T C EXOC6 Silent p.A773A 0.27 TCGA-BR-8078-01 10 99696002 99696002 C T CRTAC1 Missense_Mutation p.G116R 0.20 deleterious(0) probably_damaging(0.999) TCGA-BR-8078-01 11 101833648 101833648 A - KIAA1377 Frame_Shift_Del p.K629Nfs*2 0.20 TCGA-BR-8078-01 11 102195543 102195543 C T BIRC3 Silent p.S101S 0.34 TCGA-BR-8078-01 11 102713563 102713563 T - MMP3 Frame_Shift_Del p.I64Sfs*12 0.24 TCGA-BR-8078-01 11 102736573 102736573 A T MMP12 RNA 0.37 TCGA-BR-8078-01 11 1031856 1031856 C T MUC6 Missense_Mutation p.V105I 0.37 unknown(0) TCGA-BR-8078-01 11 103908557 103908557 G A DDI1 Missense_Mutation p.R336Q 0.26 deleterious(0) possibly_damaging(0.495) TCGA-BR-8078-01 11 104820375 104820375 G T CASP4 Missense_Mutation p.P226T 0.24 deleterious(0.02) probably_damaging(0.942) TCGA-BR-8078-01 11 104825608 104825608 T - CASP4 Frame_Shift_Del p.K43Rfs*37 0.23 TCGA-BR-8078-01 11 107299560 107299560 T - CWF19L2 Frame_Shift_Del p.E467Nfs*22 0.27 TCGA-BR-8078-01 11 1078296 1078296 A G MUC2 Missense_Mutation p.N195D 0.27 probably_damaging(0.981) TCGA-BR-8078-01 11 10789974 10789974 A T CTR9 Missense_Mutation p.D682V 0.22 deleterious(0.02) benign(0.089) TCGA-BR-8078-01 11 108788854 108788854 T - DDX10 Intron 0.36 TCGA-BR-8078-01 11 111657215 111657215 A T ALG9 Missense_Mutation p.V417D 0.28 deleterious(0) possibly_damaging(0.798) TCGA-BR-8078-01 11 112064312 112064312 A - BCO2 Frame_Shift_Del p.N138Tfs*4 0.28 TCGA-BR-8078-01 11 113075136 113075136 G A NCAM1 Missense_Mutation p.A145T 0.30 deleterious(0.01) possibly_damaging(0.78) TCGA-BR-8078-01 11 113230172 113230172 T - TTC12 Frame_Shift_Del p.F512Lfs*10 0.24 TCGA-BR-8078-01 11 113860304 113860304 T C HTR3A Missense_Mutation p.L457P 0.34 deleterious(0) probably_damaging(0.994) TCGA-BR-8078-01 11 116658284 116658284 A C ZNF259 Missense_Mutation p.C83G 0.32 deleterious(0) probably_damaging(1) TCGA-BR-8078-01 11 117789464 117789464 G T TMPRSS13 Silent p.A37A 0.39 TCGA-BR-8078-01 11 118773127 118773127 C - BCL9L Frame_Shift_Del p.G442Afs*21 0.26 TCGA-BR-8078-01 11 119993751 119993751 C T TRIM29 Missense_Mutation p.R449H 0.24 deleterious(0.01) possibly_damaging(0.893) TCGA-BR-8078-01 11 119996467 119996467 C T TRIM29 Missense_Mutation p.R422H 0.09 deleterious(0) possibly_damaging(0.72) TCGA-BR-8078-01 11 120008538 120008538 C T TRIM29 Missense_Mutation p.A68T 0.35 tolerated_low_confidence(0.07) benign(0.003) TCGA-BR-8078-01 11 120008669 120008669 C T TRIM29 Missense_Mutation p.G24D 0.32 deleterious_low_confidence(0.01) benign(0.282) TCGA-BR-8078-01 11 121038848 121038848 C T TECTA Missense_Mutation p.T1891M 0.35 deleterious(0.05) possibly_damaging(0.509) TCGA-BR-8078-01 11 121475905 121475905 A - SORL1 Frame_Shift_Del p.M1581Cfs*34 0.22 TCGA-BR-8078-01 11 121495927 121495927 T C SORL1 Missense_Mutation p.L2102P 0.27 tolerated(0.11) probably_damaging(0.999) TCGA-BR-8078-01 11 1215389 1215389 T C MUC5AC RNA 0.38 TCGA-BR-8078-01 11 12234929 12234929 A T MICAL2 Missense_Mutation p.K273N 0.34 deleterious(0) probably_damaging(0.997) TCGA-BR-8078-01 11 122848477 122848477 G A BSX Silent p.A194A 0.36 TCGA-BR-8078-01 11 123484322 123484322 C T GRAMD1B Missense_Mutation p.T585M 0.22 tolerated(0.27) probably_damaging(0.999) TCGA-BR-8078-01 11 124413368 124413368 G A OR8B12 Silent p.F61F 0.22 TCGA-BR-8078-01 11 125763900 125763900 C T PUS3 Missense_Mutation p.R409H 0.31 deleterious(0) benign(0.425) TCGA-BR-8078-01 11 128786370 128786370 C T KCNJ5 Missense_Mutation p.P335L 0.25 deleterious(0) probably_damaging(0.956) TCGA-BR-8078-01 11 132306587 132306587 T C OPCML Missense_Mutation p.M251V 0.30 tolerated(0.32) benign(0.001) TCGA-BR-8078-01 11 13393879 13393879 C T ARNTL Silent p.N329N 0.35 TCGA-BR-8078-01 11 134019044 134019044 G A JAM3 Missense_Mutation p.D301N 0.21 deleterious(0.04) benign(0.028) TCGA-BR-8078-01 11 134179653 134179653 C A GLB1L3 Missense_Mutation p.S365R 0.44 deleterious(0) probably_damaging(1) TCGA-BR-8078-01 11 13514363 13514363 T C PTH Missense_Mutation p.M14V 0.34 tolerated(0.1) benign(0.014) TCGA-BR-8078-01 11 16837793 16837793 G A PLEKHA7 Nonsense_Mutation p.R629* 0.24 TCGA-BR-8078-01 11 1861852 1861852 C T TNNI2 Missense_Mutation p.P51L 0.26 deleterious(0) probably_damaging(0.939) TCGA-BR-8078-01 11 20122554 20122554 G A NAV2 Missense_Mutation p.V2144I 0.30 tolerated(1) benign(0.009) TCGA-BR-8078-01 11 20136150 20136150 C T NAV2 Missense_Mutation p.R2384C 0.20 deleterious(0) probably_damaging(0.996) TCGA-BR-8078-01 11 20628625 20628625 T C SLC6A5 Missense_Mutation p.L251P 0.40 deleterious(0) probably_damaging(0.996) TCGA-BR-8078-01 11 2167576 2167576 C - INS-IGF2 3'Flank 0.26 TCGA-BR-8078-01 11 26586992 26586992 G A MUC15 Silent p.P165P 0.30 TCGA-BR-8078-01 11 27389978 27389978 C T LGR4 Silent p.A764A 0.35 TCGA-BR-8078-01 11 27403790 27403790 T C LGR4 Missense_Mutation p.N235D 0.45 deleterious(0) probably_damaging(0.996) TCGA-BR-8078-01 11 292922 292922 G A ATHL1 Missense_Mutation p.V399M 0.21 tolerated(0.07) probably_damaging(0.979) TCGA-BR-8078-01 11 31327282 31327282 C T DCDC1 Missense_Mutation p.A212T 0.23 deleterious(0) probably_damaging(1) TCGA-BR-8078-01 11 31822335 31822335 A G PAX6 Missense_Mutation p.Y157H 0.24 deleterious(0.03) benign(0.008) TCGA-BR-8078-01 11 34489885 34489885 G A CAT Silent p.L459L 0.35 TCGA-BR-8078-01 11 34501665 34501665 A - ELF5 3'UTR 0.36 TCGA-BR-8078-01 11 34668230 34668230 C T EHF Silent p.N136N 0.28 TCGA-BR-8078-01 11 35211581 35211581 C T CD44 Silent p.I212I 0.27 TCGA-BR-8078-01 11 3697519 3697519 G T NUP98 Missense_Mutation p.P1758H 0.27 tolerated(0.12) possibly_damaging(0.605) TCGA-BR-8078-01 11 40136717 40136717 G A LRRC4C Missense_Mutation p.R376W 0.19 deleterious(0) probably_damaging(0.981) TCGA-BR-8078-01 11 43861602 43861602 C T HSD17B12 Silent p.G224G 0.29 TCGA-BR-8078-01 11 4406849 4406849 C T TRIM21 Missense_Mutation p.R365K 0.23 tolerated(0.13) probably_damaging(0.999) TCGA-BR-8078-01 11 44286458 44286458 C T ALX4 Silent p.A394A 0.32 TCGA-BR-8078-01 11 45204538 45204538 T C PRDM11 Missense_Mutation p.M117T 0.36 deleterious(0) benign(0.326) TCGA-BR-8078-01 11 45672017 45672017 G A CHST1 Missense_Mutation p.R153C 0.37 deleterious(0) probably_damaging(1) TCGA-BR-8078-01 11 45832912 45832912 G A SLC35C1 3'UTR 0.33 TCGA-BR-8078-01 11 45948373 45948373 C - GYLTL1B Frame_Shift_Del p.R428Gfs*30 0.31 TCGA-BR-8078-01 11 46749689 46749689 G A F2 Missense_Mutation p.R425H 0.31 deleterious(0.01) probably_damaging(0.996) TCGA-BR-8078-01 11 47159253 47159253 C T C11orf49 Missense_Mutation p.P113L 0.29 deleterious(0) probably_damaging(1) TCGA-BR-8078-01 11 47308066 47308066 G A MADD Silent p.T878T 0.28 TCGA-BR-8078-01 11 47493853 47493853 C T CELF1 Missense_Mutation p.G490S 0.30 deleterious(0) probably_damaging(0.989) TCGA-BR-8078-01 11 47594388 47594388 A - KBTBD4 3'UTR 0.35 TCGA-BR-8078-01 11 55136189 55136189 T A OR4A15 Nonsense_Mutation p.L277* 0.09 TCGA-BR-8078-01 11 55653610 55653610 A - TRIM51 Frame_Shift_Del p.M144Cfs*15 0.35 TCGA-BR-8078-01 11 55926924 55926924 G C OR8K5 Nonsense_Mutation p.Y290* 0.28 TCGA-BR-8078-01 11 5632636 5632636 C A TRIM6 3'UTR 0.22 TCGA-BR-8078-01 11 57004500 57004500 G T APLNR 5'UTR 0.48 TCGA-BR-8078-01 11 58978570 58978570 G - MPEG1 Frame_Shift_Del p.P590Lfs*13 0.26 TCGA-BR-8078-01 11 59271133 59271134 - T OR4D11 Frame_Shift_Ins p.L31Ffs*22 0.31 TCGA-BR-8078-01 11 60609936 60609936 C T CCDC86 Silent p.S113S 0.21 TCGA-BR-8078-01 11 60704176 60704176 G - TMEM132A Frame_Shift_Del p.R960Gfs*5 0.24 TCGA-BR-8078-01 11 61533538 61533538 A G MYRF Silent p.G81G 0.70 TCGA-BR-8078-01 11 61646235 61646235 C T FADS3 Missense_Mutation p.V203M 0.29 deleterious(0.01) probably_damaging(1) TCGA-BR-8078-01 11 61732105 61732105 A G FTH1 3'UTR 0.30 TCGA-BR-8078-01 11 62376111 62376111 A G EML3 Missense_Mutation p.V338A 0.39 tolerated(0.08) benign(0.297) TCGA-BR-8078-01 11 6239917 6239917 C T FAM160A2 Missense_Mutation p.A450T 0.32 deleterious(0) probably_damaging(0.998) TCGA-BR-8078-01 11 63313787 63313787 C - RARRES3 3'UTR 0.31 TCGA-BR-8078-01 11 63884684 63884684 C T FLRT1 Silent p.D315D 0.17 TCGA-BR-8078-01 11 63987936 63987936 G A FERMT3 Missense_Mutation p.G451D 0.34 deleterious(0) benign(0.03) TCGA-BR-8078-01 11 6424925 6424925 G - APBB1 Frame_Shift_Del p.G284Afs*48 0.39 TCGA-BR-8078-01 11 64390437 64390437 G T NRXN2 Missense_Mutation p.L1321M 0.25 deleterious(0) probably_damaging(0.988) TCGA-BR-8078-01 11 64397897 64397897 G A NRXN2 Missense_Mutation p.P1245L 0.34 deleterious(0) probably_damaging(0.975) TCGA-BR-8078-01 11 64535117 64535117 G - SF1 Frame_Shift_Del p.P548Lfs*10 0.29 TCGA-BR-8078-01 11 64537456 64537457 CA - SF1 Frame_Shift_Del p.V278Gfs*48 0.19 TCGA-BR-8078-01 11 64622217 64622217 C T EHD1 Missense_Mutation p.R398Q 0.26 tolerated(0.25) benign(0.004) TCGA-BR-8078-01 11 6478933 6478933 G A TRIM3 Missense_Mutation p.R170C 0.06 deleterious(0.04) benign(0.002) TCGA-BR-8078-01 11 65108459 65108459 C T DPF2 Silent p.Y72Y 0.29 TCGA-BR-8078-01 11 65144465 65144465 G - SLC25A45 Frame_Shift_Del p.P141Hfs*30 0.22 TCGA-BR-8078-01 11 65267838 65267838 T C MALAT1 RNA 0.31 TCGA-BR-8078-01 11 65308389 65308389 T C LTBP3 Missense_Mutation p.Y977C 0.31 deleterious(0) possibly_damaging(0.77) TCGA-BR-8078-01 11 65350555 65350555 A G EHBP1L1 Silent p.S804S 0.33 TCGA-BR-8078-01 11 65660374 65660374 T C FOSL1 Missense_Mutation p.T267A 0.24 deleterious(0) unknown(0) TCGA-BR-8078-01 11 66108714 66108714 C - BRMS1 Frame_Shift_Del p.L108Cfs*22 0.30 TCGA-BR-8078-01 11 66329782 66329782 G A CTSF 3'Flank 0.38 TCGA-BR-8078-01 11 67191150 67191150 C T CARNS1 Missense_Mutation p.A644V 0.42 tolerated(0.17) benign(0.062) TCGA-BR-8078-01 11 67402373 67402373 G - TBX10 Frame_Shift_Del p.F98Sfs*3 0.24 TCGA-BR-8078-01 11 67789245 67789245 T C ALDH3B1 Missense_Mutation p.I284T 0.28 deleterious(0) possibly_damaging(0.841) TCGA-BR-8078-01 11 679801 679801 G A DEAF1 Missense_Mutation p.S338L 0.32 tolerated(0.05) probably_damaging(0.99) TCGA-BR-8078-01 11 68517988 68517988 G A MTL5 Silent p.H47H 0.56 TCGA-BR-8078-01 11 6942872 6942872 G A OR2D3 Missense_Mutation p.A214T 0.21 tolerated(0.14) benign(0.259) TCGA-BR-8078-01 11 70338495 70338495 G A SHANK2 Missense_Mutation p.A796V 0.34 deleterious(0) possibly_damaging(0.878) TCGA-BR-8078-01 11 71146749 71146749 C T DHCR7 Missense_Mutation p.R367H 0.19 tolerated(0.13) benign(0.005) TCGA-BR-8078-01 11 71276739 71276739 G T KRTAP5-10 Missense_Mutation p.G36W 0.33 unknown(0) TCGA-BR-8078-01 11 71726711 71726711 T G NUMA1 Missense_Mutation p.K613T 0.26 possibly_damaging(0.575) TCGA-BR-8078-01 11 71821688 71821688 A C LRTOMT 3'UTR 0.36 TCGA-BR-8078-01 11 71948748 71948748 C - INPPL1 Frame_Shift_Del p.R1156Gfs*46 0.38 TCGA-BR-8078-01 11 72295937 72295937 G A PDE2A Silent p.D446D 0.18 TCGA-BR-8078-01 11 72385209 72385209 G A PDE2A Nonsense_Mutation p.Q15* 0.25 TCGA-BR-8078-01 11 72535841 72535842 - TG ATG16L2 Frame_Shift_Ins p.A321Wfs*40 0.24 TCGA-BR-8078-01 11 73020660 73020660 G T ARHGEF17 Missense_Mutation p.S326I 0.28 deleterious_low_confidence(0.01) benign(0.009) TCGA-BR-8078-01 11 73021304 73021304 C A ARHGEF17 Missense_Mutation p.L541M 0.34 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-BR-8078-01 11 73101832 73101832 C - RELT Frame_Shift_Del p.P53Qfs*178 0.31 TCGA-BR-8078-01 11 7663564 7663564 A G PPFIBP2 Missense_Mutation p.D518G 0.17 deleterious(0) probably_damaging(0.996) TCGA-BR-8078-01 11 76831837 76831837 G A CAPN5 Missense_Mutation p.V457I 0.32 tolerated(0.12) benign(0.322) TCGA-BR-8078-01 11 78368952 78368952 A - TENM4 3'UTR 0.15 TCGA-BR-8078-01 11 85977144 85977144 A - EED Frame_Shift_Del p.I251* 0.29 TCGA-BR-8078-01 11 86662525 86662525 T C FZD4 Missense_Mutation p.T425A 0.26 tolerated(0.16) benign(0.072) TCGA-BR-8078-01 11 87029231 87029231 C T TMEM135 Missense_Mutation p.A377V 0.21 tolerated(0.15) benign(0.037) TCGA-BR-8078-01 11 88068108 88068108 A - CTSC Frame_Shift_Del p.F105Lfs*10 0.33 TCGA-BR-8078-01 11 92531574 92531574 C A FAT3 Silent p.R1799R 0.27 TCGA-BR-8078-01 11 92577235 92577235 G T FAT3 Missense_Mutation p.G3568W 0.29 probably_damaging(1) TCGA-BR-8078-01 11 92623907 92623907 G T FAT3 Silent p.L4466L 0.17 TCGA-BR-8078-01 12 1009685 1009685 G A WNK1 Silent p.Q2164Q 0.29 TCGA-BR-8078-01 12 101588916 101588916 G A SLC5A8 Missense_Mutation p.A165V 0.19 tolerated(0.26) benign(0.013) TCGA-BR-8078-01 12 102041875 102041875 G A MYBPC1 Silent p.G356G 0.24 TCGA-BR-8078-01 12 102164271 102164271 C T GNPTAB Nonsense_Mutation p.W342* 0.47 TCGA-BR-8078-01 12 104152955 104152955 C T STAB2 Silent p.S2384S 0.19 TCGA-BR-8078-01 12 104388188 104388188 A T GLT8D2 Missense_Mutation p.I231N 0.20 deleterious(0) possibly_damaging(0.664) TCGA-BR-8078-01 12 105321865 105321865 C T SLC41A2 Silent p.V147V 0.21 TCGA-BR-8078-01 12 106460837 106460837 C T NUAK1 Missense_Mutation p.V577M 0.21 deleterious(0) benign(0.347) TCGA-BR-8078-01 12 108169097 108169097 C - ASCL4 Frame_Shift_Del p.L37Sfs*53 0.31 TCGA-BR-8078-01 12 108912632 108912632 G A FICD Missense_Mutation p.V253M 0.46 deleterious(0) probably_damaging(0.997) TCGA-BR-8078-01 12 109826583 109826583 C T MYO1H Silent p.D20D 0.47 TCGA-BR-8078-01 12 111352095 111352095 C A MYL2 Splice_Site p.X57_splice 0.21 TCGA-BR-8078-01 12 11174710 11174710 C T TAS2R19 Nonsense_Mutation p.W154* 0.45 TCGA-BR-8078-01 12 111954046 111954046 G - ATXN2 Frame_Shift_Del p.S590Rfs*58 0.33 TCGA-BR-8078-01 12 112140077 112140078 - T ACAD10 Frame_Shift_Ins p.L102Ffs*10 0.24 TCGA-BR-8078-01 12 112184963 112184963 C T ACAD10 Silent p.R820R 0.27 TCGA-BR-8078-01 12 112221025 112221025 C T RP11-162P23.2 Missense_Mutation p.R92C 0.19 deleterious(0.02) benign(0.027) TCGA-BR-8078-01 12 112308145 112308145 T - MAPKAPK5 Frame_Shift_Del p.F156Lfs*10 0.38 TCGA-BR-8078-01 12 112457688 112457688 G - ERP29 Frame_Shift_Del p.I93Sfs*8 0.16 TCGA-BR-8078-01 12 112590274 112590274 G A TRAFD1 Missense_Mutation p.A555T 0.49 tolerated(0.24) benign(0.034) TCGA-BR-8078-01 12 112622703 112622703 C T HECTD4 Missense_Mutation p.R3210H 0.23 probably_damaging(0.997) TCGA-BR-8078-01 12 112688019 112688019 C T HECTD4 Silent p.L1147L 0.38 TCGA-BR-8078-01 12 113346491 113346492 AG - OAS1 Frame_Shift_Del p.R113Sfs*7 0.16 TCGA-BR-8078-01 12 113600758 113600758 C A DDX54 Missense_Mutation p.R725M 0.10 tolerated(0.1) possibly_damaging(0.482) TCGA-BR-8078-01 12 113645381 113645381 T - IQCD Frame_Shift_Del p.K197Nfs*41 0.27 TCGA-BR-8078-01 12 114296674 114296674 G A RBM19 Silent p.R862R 0.29 TCGA-BR-8078-01 12 116422119 116422119 C T MED13L Missense_Mutation p.R1466H 0.16 deleterious(0.02) unknown(0) TCGA-BR-8078-01 12 120189988 120189988 G A CIT Missense_Mutation p.S924F 0.36 deleterious(0.01) possibly_damaging(0.613) TCGA-BR-8078-01 12 12044106 12044106 G A ETV6 3'UTR 0.61 TCGA-BR-8078-01 12 121655036 121655036 A G P2RX4 Silent p.K94K 0.04 TCGA-BR-8078-01 12 121757618 121757618 A G ANAPC5 Missense_Mutation p.W507R 0.52 deleterious(0) possibly_damaging(0.748) TCGA-BR-8078-01 12 121958808 121958808 C T KDM2B Missense_Mutation p.E343K 0.24 tolerated(0.06) benign(0.173) TCGA-BR-8078-01 12 122090652 122090653 CT - MORN3 Frame_Shift_Del p.E237Gfs*45 0.22 TCGA-BR-8078-01 12 122481866 122481866 G A BCL7A Missense_Mutation p.A116T 0.22 tolerated(0.23) possibly_damaging(0.493) TCGA-BR-8078-01 12 122492808 122492808 C T BCL7A Silent p.A179A 0.25 TCGA-BR-8078-01 12 122497071 122497071 C T BCL7A 3'UTR 0.22 TCGA-BR-8078-01 12 122658459 122658459 G A IL31 Nonsense_Mutation p.R33* 0.43 TCGA-BR-8078-01 12 122848546 122848546 C T CLIP1 Missense_Mutation p.A256T 0.13 deleterious(0) probably_damaging(0.994) TCGA-BR-8078-01 12 123201180 123201180 C T HCAR3 Silent p.G35G 0.23 TCGA-BR-8078-01 12 123253718 123253718 T C DENR 3'UTR 0.53 TCGA-BR-8078-01 12 123463113 123463113 C T OGFOD2 Silent p.Y116Y 0.36 TCGA-BR-8078-01 12 123738251 123738251 T G C12orf65 Silent p.P10P 0.29 TCGA-BR-8078-01 12 123794283 123794283 T - SBNO1 Frame_Shift_Del p.N1139Mfs*9 0.47 TCGA-BR-8078-01 12 124102357 124102357 G A DDX55 Missense_Mutation p.A368T 0.22 deleterious(0) probably_damaging(1) TCGA-BR-8078-01 12 124144833 124144833 C T GTF2H3 3'UTR 0.47 TCGA-BR-8078-01 12 124870328 124870328 T C NCOR2 Missense_Mutation p.N661S 0.52 unknown(0) TCGA-BR-8078-01 12 125509729 125509729 G A BRI3BP Missense_Mutation p.C170Y 0.23 deleterious(0.02) probably_damaging(0.978) TCGA-BR-8078-01 12 125834260 125834260 T C TMEM132B Silent p.S105S 0.26 TCGA-BR-8078-01 12 131620613 131620613 C T GPR133 Missense_Mutation p.P767S 0.58 deleterious(0) probably_damaging(1) TCGA-BR-8078-01 12 132211522 132211522 T A SFSWAP Missense_Mutation p.D290E 0.25 tolerated(0.19) benign(0.071) TCGA-BR-8078-01 12 132398927 132398927 C T ULK1 Silent p.C426C 0.19 TCGA-BR-8078-01 12 132416772 132416772 C A PUS1 Missense_Mutation p.A119D 0.23 deleterious(0) probably_damaging(1) TCGA-BR-8078-01 12 132426072 132426072 C T PUS1 Silent p.C260C 0.26 TCGA-BR-8078-01 12 132504671 132504671 C T EP400 Missense_Mutation p.T1452M 0.36 unknown(0) TCGA-BR-8078-01 12 132632496 132632496 C T NOC4L Silent p.T225T 0.32 TCGA-BR-8078-01 12 133360718 133360718 C T GOLGA3 Intron 0.17 TCGA-BR-8078-01 12 133733401 133733401 C T ZNF10 Silent p.G523G 0.48 TCGA-BR-8078-01 12 13715915 13715915 C T GRIN2B Silent p.P1419P 0.21 TCGA-BR-8078-01 12 13716141 13716141 G A GRIN2B Missense_Mutation p.A1344V 0.50 tolerated(0.4) benign(0.147) TCGA-BR-8078-01 12 15095522 15095522 G A ARHGDIB Silent p.D180D 0.24 TCGA-BR-8078-01 12 18491389 18491390 - A PIK3C2G Frame_Shift_Ins p.I437Nfs*19 0.18 TCGA-BR-8078-01 12 20903684 20903684 G T SLCO1C1 Missense_Mutation p.G625V 0.43 deleterious(0) probably_damaging(0.993) TCGA-BR-8078-01 12 21661406 21661406 T - GOLT1B Frame_Shift_Del p.L72Wfs*6 0.24 TCGA-BR-8078-01 12 21721877 21721877 C T GYS2 Missense_Mutation p.V249I 0.23 tolerated(0.06) possibly_damaging(0.88) TCGA-BR-8078-01 12 25398281 25398281 C T KRAS Missense_Mutation p.G13D 0.65 deleterious(0.04) possibly_damaging(0.506) TCGA-BR-8078-01 12 27069026 27069026 A - ASUN Frame_Shift_Del p.L386Cfs*11 0.17 TCGA-BR-8078-01 12 27951120 27951120 A - KLHL42 3'UTR 0.18 TCGA-BR-8078-01 12 29640731 29640731 C T OVCH1 Missense_Mutation p.A263T 0.28 tolerated(0.49) benign(0.038) TCGA-BR-8078-01 12 29648250 29648250 G A OVCH1 Missense_Mutation p.A141V 0.44 deleterious(0) probably_damaging(0.992) TCGA-BR-8078-01 12 2994544 2994544 A - RHNO1 Frame_Shift_Del p.K6Nfs*89 0.32 TCGA-BR-8078-01 12 30888129 30888129 C T CAPRIN2 Silent p.A194A 0.17 TCGA-BR-8078-01 12 39734129 39734129 T - KIF21A Frame_Shift_Del p.V717Lfs*12 0.17 TCGA-BR-8078-01 12 39745735 39745735 T - KIF21A Frame_Shift_Del p.N506Tfs*2 0.31 TCGA-BR-8078-01 12 40697958 40697958 A - LRRK2 Intron 0.32 TCGA-BR-8078-01 12 40699672 40699673 - G LRRK2 Frame_Shift_Ins p.K1290Efs*12 0.33 TCGA-BR-8078-01 12 40702310 40702310 G A LRRK2 Missense_Mutation p.R1334Q 0.11 deleterious(0) probably_damaging(0.997) TCGA-BR-8078-01 12 43822569 43822569 G A ADAMTS20 Missense_Mutation p.R1175C 0.24 deleterious(0) probably_damaging(1) TCGA-BR-8078-01 12 43925845 43925845 C T ADAMTS20 Missense_Mutation p.V203M 0.22 deleterious(0.04) possibly_damaging(0.8) TCGA-BR-8078-01 12 44781841 44781841 G A TMEM117 Missense_Mutation p.V311I 0.45 deleterious(0.01) probably_damaging(0.981) TCGA-BR-8078-01 12 4479894 4479894 T C FGF23 Missense_Mutation p.Y124C 0.16 deleterious(0.01) probably_damaging(0.918) TCGA-BR-8078-01 12 45173705 45173705 C A NELL2 Missense_Mutation p.A196S 0.22 deleterious(0) probably_damaging(0.998) TCGA-BR-8078-01 12 46123895 46123895 T C ARID2 Missense_Mutation p.V54A 0.11 deleterious(0) probably_damaging(0.992) TCGA-BR-8078-01 12 4655492 4655492 A G RAD51AP1 Missense_Mutation p.K93R 0.19 deleterious(0.01) probably_damaging(0.986) TCGA-BR-8078-01 12 4705421 4705421 T C DYRK4 Missense_Mutation p.V130A 0.21 deleterious(0) probably_damaging(0.999) TCGA-BR-8078-01 12 4719362 4719362 A - DYRK4 Frame_Shift_Del p.R355Dfs*12 0.34 TCGA-BR-8078-01 12 4736154 4736154 G - AKAP3 Frame_Shift_Del p.R639Gfs*15 0.38 TCGA-BR-8078-01 12 48179218 48179218 G A HDAC7 Missense_Mutation p.P915S 0.45 deleterious(0.01) benign(0.313) TCGA-BR-8078-01 12 48189044 48189045 - G HDAC7 Frame_Shift_Ins p.S403Qfs*33 0.32 TCGA-BR-8078-01 12 4829833 4829833 C A GALNT8 5'UTR 0.20 TCGA-BR-8078-01 12 48921732 48921732 A G OR8S1 Missense_Mutation p.Q309R 0.44 tolerated(0.12) benign(0) TCGA-BR-8078-01 12 49374348 49374348 G - WNT1 Frame_Shift_Del p.G169Afs*30 0.33 TCGA-BR-8078-01 12 49523373 49523375 CTC - TUBA1B In_Frame_Del p.G45del 0.23 TCGA-BR-8078-01 12 49692181 49692181 G A PRPH 3'UTR 0.14 TCGA-BR-8078-01 12 50452564 50452564 C T ASIC1 Silent p.A5A 0.21 TCGA-BR-8078-01 12 50570804 50570804 C T LIMA1 3'UTR 0.20 TCGA-BR-8078-01 12 50835413 50835413 G A LARP4 Missense_Mutation p.G264D 0.19 deleterious(0.02) possibly_damaging(0.452) TCGA-BR-8078-01 12 51237698 51237698 C T TMPRSS12 Silent p.G87G 0.44 TCGA-BR-8078-01 12 51389421 51389421 G A SLC11A2 Silent p.N356N 0.18 TCGA-BR-8078-01 12 52139762 52139762 G A SCN8A Missense_Mutation p.G692R 0.21 tolerated(0.66) benign(0.024) TCGA-BR-8078-01 12 52827736 52827736 G - KRT75 Frame_Shift_Del p.P118Lfs*14 0.17 TCGA-BR-8078-01 12 53040721 53040721 G A KRT2 Silent p.I424I 0.52 TCGA-BR-8078-01 12 56031165 56031165 A G OR10P1 Missense_Mutation p.I164V 0.27 tolerated(0.2) possibly_damaging(0.699) TCGA-BR-8078-01 12 56113255 56113255 G T BLOC1S1 Intron 0.19 TCGA-BR-8078-01 12 56478854 56478854 G A ERBB3 Missense_Mutation p.V104M 0.19 deleterious(0.05) possibly_damaging(0.789) TCGA-BR-8078-01 12 56536104 56536104 A G ESYT1 Silent p.L886L 0.25 TCGA-BR-8078-01 12 56557535 56557535 G - SMARCC2 Frame_Shift_Del p.L1195Cfs*88 0.38 TCGA-BR-8078-01 12 56648052 56648052 G T ANKRD52 Silent p.P235P 0.35 TCGA-BR-8078-01 12 57033006 57033006 C T ATP5B Missense_Mutation p.R458Q 0.32 deleterious_low_confidence(0.04) probably_damaging(0.922) TCGA-BR-8078-01 12 57535223 57535223 T C LRP1 Missense_Mutation p.V86A 0.32 benign(0.048) TCGA-BR-8078-01 12 57554890 57554890 G T LRP1 Missense_Mutation p.D732Y 0.33 benign(0.328) TCGA-BR-8078-01 12 57572242 57572242 G - LRP1 Frame_Shift_Del p.E1490Rfs*80 0.38 TCGA-BR-8078-01 12 57598433 57598433 C T LRP1 Missense_Mutation p.R3699W 0.17 probably_damaging(0.999) TCGA-BR-8078-01 12 57859040 57859040 T C GLI1 Splice_Site p.X178_splice 0.17 TCGA-BR-8078-01 12 58001073 58001073 C - DTX3 Frame_Shift_Del p.L145Cfs*51 0.38 TCGA-BR-8078-01 12 6031894 6031894 A G ANO2 Silent p.H29H 0.38 TCGA-BR-8078-01 12 6135070 6135070 A G VWF Splice_Site p.X1036_splice 0.23 TCGA-BR-8078-01 12 64055263 64055263 T - DPY19L2 Splice_Site p.X151_splice 0.35 TCGA-BR-8078-01 12 6438412 6438413 - A TNFRSF1A 3'UTR 0.36 TCGA-BR-8078-01 12 64519881 64519881 C T SRGAP1 Silent p.G783G 0.23 TCGA-BR-8078-01 12 64895142 64895142 G A TBK1 Missense_Mutation p.R724H 0.06 tolerated_low_confidence(0.08) probably_damaging(0.997) TCGA-BR-8078-01 12 66620619 66620619 T C IRAK3 Splice_Site p.X256_splice 0.54 TCGA-BR-8078-01 12 70732481 70732481 G T CNOT2 Missense_Mutation p.D353Y 0.21 deleterious(0) probably_damaging(1) TCGA-BR-8078-01 12 7522059 7522059 A G CD163L1 Silent p.D1311D 0.23 TCGA-BR-8078-01 12 79689885 79689885 G A SYT1 Missense_Mutation p.A171T 0.31 deleterious(0.04) benign(0.089) TCGA-BR-8078-01 12 82872739 82872739 A G METTL25 Missense_Mutation p.K583R 0.23 tolerated(0.11) benign(0.024) TCGA-BR-8078-01 12 90013833 90013833 T - ATP2B1 Frame_Shift_Del p.N591Ifs*16 0.20 TCGA-BR-8078-01 12 9083041 9083041 T C PHC1 Missense_Mutation p.L208S 0.27 deleterious(0) probably_damaging(0.993) TCGA-BR-8078-01 12 93251100 93251100 G A EEA1 Missense_Mutation p.S106L 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-BR-8078-01 12 96394728 96394728 A - LTA4H 3'UTR 0.32 TCGA-BR-8078-01 12 98909808 98909808 G A TMPO Missense_Mutation p.A55T 0.55 tolerated_low_confidence(0.07) benign(0.011) TCGA-BR-8078-01 13 100637592 100637592 C A ZIC2 Missense_Mutation p.P419T 0.15 deleterious(0.02) benign(0.098) TCGA-BR-8078-01 13 103698404 103698404 T C SLC10A2 3'UTR 0.11 TCGA-BR-8078-01 13 108861786 108861786 C T LIG4 Missense_Mutation p.A611T 0.20 tolerated(0.19) benign(0.079) TCGA-BR-8078-01 13 113719271 113719271 A G MCF2L Missense_Mutation p.M210V 0.30 tolerated(0.06) benign(0.149) TCGA-BR-8078-01 13 113750894 113750894 G C MCF2L Missense_Mutation p.E1073D 0.22 deleterious(0.01) possibly_damaging(0.594) TCGA-BR-8078-01 13 113835535 113835535 T C PCID2 Missense_Mutation p.Y286C 0.19 tolerated(0.09) benign(0.018) TCGA-BR-8078-01 13 114776705 114776705 G A RASA3 Missense_Mutation p.T511M 0.44 deleterious(0) probably_damaging(1) TCGA-BR-8078-01 13 21384005 21384005 A - XPO4 Frame_Shift_Del p.F425Lfs*17 0.18 TCGA-BR-8078-01 13 23911843 23911843 A - SACS Frame_Shift_Del p.S2058Lfs*19 0.13 TCGA-BR-8078-01 13 25030500 25030500 T - PARP4 Frame_Shift_Del p.K847Nfs*25 0.24 TCGA-BR-8078-01 13 25284679 25284679 C T ATP12A Silent p.L955L 0.04 TCGA-BR-8078-01 13 31233355 31233355 C T USPL1 Silent p.C1047C 0.25 TCGA-BR-8078-01 13 31233466 31233466 C T USPL1 Silent p.F1084F 0.14 TCGA-BR-8078-01 13 31480912 31480912 T G MEDAG Missense_Mutation p.L87R 0.36 deleterious(0.01) probably_damaging(0.996) TCGA-BR-8078-01 13 31498632 31498632 G - MEDAG 3'UTR 0.13 TCGA-BR-8078-01 13 32954272 32954273 - A BRCA2 Frame_Shift_Ins p.T3085Nfs*26 0.34 TCGA-BR-8078-01 13 33590827 33590827 C T KL Silent p.H83H 0.41 TCGA-BR-8078-01 13 33591260 33591260 G A KL Missense_Mutation p.G228S 0.23 deleterious(0) probably_damaging(0.982) TCGA-BR-8078-01 13 36909426 36909426 C - SPG20 Frame_Shift_Del p.G181Vfs*34 0.16 TCGA-BR-8078-01 13 37582924 37582924 A C EXOSC8 Missense_Mutation p.T223P 0.25 deleterious(0) probably_damaging(0.973) TCGA-BR-8078-01 13 38210974 38210974 T - TRPC4 3'UTR 0.23 TCGA-BR-8078-01 13 39435611 39435611 G A FREM2 Silent p.P2521P 0.24 TCGA-BR-8078-01 13 39917882 39917882 T - LHFP 3'UTR 0.68 TCGA-BR-8078-01 13 40175215 40175215 A G LHFP Missense_Mutation p.F47L 0.15 tolerated(0.05) probably_damaging(0.987) TCGA-BR-8078-01 13 41303725 41303725 T C MRPS31 Missense_Mutation p.D324G 0.20 deleterious(0.03) benign(0.226) TCGA-BR-8078-01 13 41486766 41486766 C A SUGT1P3 RNA 0.20 TCGA-BR-8078-01 13 41556277 41556277 A - ELF1 5'UTR 0.26 TCGA-BR-8078-01 13 42407530 42407530 C T VWA8 Silent p.A521A 0.21 TCGA-BR-8078-01 13 42877676 42877676 C T AKAP11 Silent p.C1598C 0.21 TCGA-BR-8078-01 13 45149774 45149774 G A TSC22D1 Missense_Mutation p.T146M 0.33 deleterious(0) probably_damaging(0.998) TCGA-BR-8078-01 13 46103989 46103989 T C COG3 Missense_Mutation p.L765S 0.25 tolerated(0.45) possibly_damaging(0.703) TCGA-BR-8078-01 13 51935996 51935996 C T SERPINE3 Missense_Mutation p.P380S 0.21 deleterious(0.04) probably_damaging(1) TCGA-BR-8078-01 13 52960256 52960256 G A THSD1 Missense_Mutation p.R363C 0.27 deleterious(0) probably_damaging(1) TCGA-BR-8078-01 13 52960305 52960305 C T THSD1 Nonsense_Mutation p.W346* 0.26 TCGA-BR-8078-01 13 52971604 52971604 G A THSD1 Missense_Mutation p.P262S 0.26 tolerated(0.4) benign(0.408) TCGA-BR-8078-01 13 53420351 53420351 C T PCDH8 Missense_Mutation p.G741R 0.33 deleterious(0.04) probably_damaging(0.928) TCGA-BR-8078-01 13 58207290 58207290 G A PCDH17 Missense_Mutation p.E204K 0.26 deleterious(0) probably_damaging(0.999) TCGA-BR-8078-01 13 58207934 58207934 C T PCDH17 Silent p.Y418Y 0.24 TCGA-BR-8078-01 13 58208012 58208012 G A PCDH17 Silent p.A444A 0.20 TCGA-BR-8078-01 13 58208351 58208351 G A PCDH17 Silent p.S557S 0.29 TCGA-BR-8078-01 13 73428254 73428254 A - PIBF1 Frame_Shift_Del p.K429Rfs*4 0.23 TCGA-BR-8078-01 13 77671704 77671705 - T MYCBP2 Frame_Shift_Ins p.K3158Efs*4 0.21 TCGA-BR-8078-01 13 80125185 80125185 A T NDFIP2 Missense_Mutation p.Y314F 0.06 deleterious(0) probably_damaging(1) TCGA-BR-8078-01 13 86369595 86369595 C T SLITRK6 Missense_Mutation p.R350H 0.20 deleterious(0.03) benign(0.016) TCGA-BR-8078-01 13 95095734 95095734 A - DCT Frame_Shift_Del p.L479* 0.19 TCGA-BR-8078-01 13 96242593 96242593 G A DZIP1 Nonsense_Mutation p.R595* 0.29 TCGA-BR-8078-01 13 98829062 98829062 G A RNF113B Silent p.H143H 0.25 TCGA-BR-8078-01 13 99515771 99515771 C T DOCK9 Silent p.E1106E 0.17 TCGA-BR-8078-01 14 100706003 100706003 G A YY1 Missense_Mutation p.G141D 0.30 tolerated(0.88) benign(0.001) TCGA-BR-8078-01 14 101492130 101492130 G A MIR323A RNA 0.24 TCGA-BR-8078-01 14 102471550 102471550 C T DYNC1H1 Nonsense_Mutation p.R1804* 0.41 TCGA-BR-8078-01 14 102548569 102548571 GTC - HSP90AA1 In_Frame_Del p.D778del 0.22 TCGA-BR-8078-01 14 102807760 102807760 G A ZNF839 Silent p.P676P 0.23 TCGA-BR-8078-01 14 103447236 103447237 - T CDC42BPB Frame_Shift_Ins p.H339Afs*5 0.25 TCGA-BR-8078-01 14 104026839 104026839 C T BAG5 Silent p.S262S 0.36 TCGA-BR-8078-01 14 105406489 105406489 G A AHNAK2 Missense_Mutation p.A5100V 0.21 benign(0.14) TCGA-BR-8078-01 14 105843234 105843234 G A PACS2 Missense_Mutation p.V311I 0.31 tolerated(0.53) possibly_damaging(0.846) TCGA-BR-8078-01 14 106321097 106321097 C T IGHM Missense_Mutation p.G298R 0.32 tolerated(0.08) possibly_damaging(0.878) TCGA-BR-8078-01 14 106780763 106780763 G A IGHV4-28 Missense_Mutation p.S34L 0.14 deleterious(0.04) benign(0.271) TCGA-BR-8078-01 14 20612565 20612565 G A OR4N5 Missense_Mutation p.R224H 0.27 tolerated(0.57) benign(0.004) TCGA-BR-8078-01 14 21250189 21250189 T C RNASE6 Missense_Mutation p.Y111H 0.30 deleterious(0.01) probably_damaging(0.996) TCGA-BR-8078-01 14 22265969 22265969 T C TRAV8-1 Silent p.A84A 0.11 TCGA-BR-8078-01 14 23443287 23443287 C T AJUBA Missense_Mutation p.R487Q 0.28 deleterious(0) possibly_damaging(0.857) TCGA-BR-8078-01 14 23870060 23870060 T C MYH6 Missense_Mutation p.Y423C 0.26 tolerated(0.15) possibly_damaging(0.905) TCGA-BR-8078-01 14 23891463 23891463 G A MYH7 Silent p.G1057G 0.27 TCGA-BR-8078-01 14 24710896 24710897 - A TINF2 Frame_Shift_Ins p.L128Ffs*9 0.38 TCGA-BR-8078-01 14 24884963 24884963 C - NYNRIN Frame_Shift_Del p.P1338Lfs*102 0.28 TCGA-BR-8078-01 14 24885916 24885917 AC - NYNRIN Frame_Shift_Del p.T1657Gfs*97 0.23 TCGA-BR-8078-01 14 25076614 25076614 T G GZMH Splice_Site p.X114_splice 0.32 TCGA-BR-8078-01 14 29237333 29237333 A G FOXG1 Missense_Mutation p.K283R 0.25 tolerated(0.44) benign(0.046) TCGA-BR-8078-01 14 31084704 31084704 A G G2E3 Missense_Mutation p.K608R 0.38 tolerated(0.57) benign(0.077) TCGA-BR-8078-01 14 31574620 31574620 C T HECTD1 Silent p.T2456T 0.20 TCGA-BR-8078-01 14 31785042 31785042 T C HEATR5A Silent p.L1384L 0.28 TCGA-BR-8078-01 14 35276669 35276669 G A BAZ1A Silent p.V238V 0.33 TCGA-BR-8078-01 14 35782126 35782126 A G PSMA6 Missense_Mutation p.Q150R 0.35 tolerated(0.15) benign(0.115) TCGA-BR-8078-01 14 45414707 45414707 C T KLHL28 Missense_Mutation p.R142H 0.34 tolerated(0.18) benign(0.022) TCGA-BR-8078-01 14 45645142 45645142 A - FANCM Frame_Shift_Del p.S1064Vfs*31 0.27 TCGA-BR-8078-01 14 47120511 47120511 C A RPL10L Missense_Mutation p.Q143H 0.39 deleterious(0.05) benign(0.039) TCGA-BR-8078-01 14 50298924 50298924 C T NEMF Splice_Site p.X269_splice 0.19 TCGA-BR-8078-01 14 50606661 50606661 A - SOS2 Frame_Shift_Del p.F928Lfs*5 0.37 TCGA-BR-8078-01 14 53100600 53100600 G A GPR137C Missense_Mutation p.D350N 0.24 deleterious(0) probably_damaging(0.982) TCGA-BR-8078-01 14 55255768 55255768 T - SAMD4A 3'UTR 0.28 TCGA-BR-8078-01 14 55509723 55509723 A G SOCS4 5'UTR 0.46 TCGA-BR-8078-01 14 55510994 55510996 CTT - SOCS4 In_Frame_Del p.S414del 0.26 TCGA-BR-8078-01 14 55817461 55817461 A - FBXO34 Frame_Shift_Del p.I120Lfs*13 0.17 TCGA-BR-8078-01 14 56763885 56763885 C T PELI2 3'UTR 0.28 TCGA-BR-8078-01 14 58927797 58927797 A - KIAA0586 Frame_Shift_Del p.G715Dfs*20 0.25 TCGA-BR-8078-01 14 59835592 59835592 T - DAAM1 3'UTR 0.28 TCGA-BR-8078-01 14 59950879 59950879 G T L3HYPDH Silent p.R52R 0.40 TCGA-BR-8078-01 14 60928227 60928227 T C C14orf39 Missense_Mutation p.R353G 0.27 deleterious(0) possibly_damaging(0.765) TCGA-BR-8078-01 14 62242911 62242911 T - SNAPC1 Frame_Shift_Del p.F213Lfs*7 0.31 TCGA-BR-8078-01 14 65198119 65198119 T C PLEKHG3 Missense_Mutation p.L241P 0.25 deleterious(0) probably_damaging(0.975) TCGA-BR-8078-01 14 65399084 65399085 - A CHURC1 3'UTR 0.43 TCGA-BR-8078-01 14 66209057 66209057 T C FUT8 Missense_Mutation p.Y553H 0.29 deleterious(0) probably_damaging(0.999) TCGA-BR-8078-01 14 67525631 67525631 T - GPHN Intron 0.39 TCGA-BR-8078-01 14 67647553 67647553 C T GPHN Missense_Mutation p.R737C 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-BR-8078-01 14 67814169 67814169 A G ATP6V1D Silent p.G103G 0.26 TCGA-BR-8078-01 14 68053850 68053850 C - PLEKHH1 Frame_Shift_Del p.T1334Pfs*43 0.36 TCGA-BR-8078-01 14 69341431 69341431 G A ACTN1 3'UTR 0.38 TCGA-BR-8078-01 14 70518795 70518795 T C SLC8A3 Missense_Mutation p.E648G 0.37 deleterious(0.04) possibly_damaging(0.863) TCGA-BR-8078-01 14 71059641 71059641 G T MED6 Missense_Mutation p.P141H 0.32 deleterious(0) probably_damaging(0.992) TCGA-BR-8078-01 14 73421139 73421139 G A DCAF4 Missense_Mutation p.R318Q 0.32 tolerated(0.23) benign(0.02) TCGA-BR-8078-01 14 73959945 73959945 A G HEATR4 Intron 0.54 TCGA-BR-8078-01 14 74206623 74206623 G - ELMSAN1 Frame_Shift_Del p.P30Lfs*12 0.18 TCGA-BR-8078-01 14 75283784 75283784 A G YLPM1 Missense_Mutation p.S1946G 0.47 probably_damaging(0.97) TCGA-BR-8078-01 14 75601704 75601704 T C TMED10 Missense_Mutation p.T182A 0.25 deleterious(0) probably_damaging(0.947) TCGA-BR-8078-01 14 75936247 75936247 G A JDP2 3'UTR 0.45 TCGA-BR-8078-01 14 76238150 76238150 G A TTLL5 Missense_Mutation p.G697S 0.31 tolerated(0.33) benign(0.003) TCGA-BR-8078-01 14 79175877 79175877 C T NRXN3 Silent p.L140L 0.29 TCGA-BR-8078-01 14 79746819 79746819 G A NRXN3 Intron 0.30 TCGA-BR-8078-01 14 88903905 88903905 C T SPATA7 Silent p.F393F 0.28 TCGA-BR-8078-01 14 88945374 88945374 G T PTPN21 Missense_Mutation p.L801I 0.33 deleterious(0.03) possibly_damaging(0.573) TCGA-BR-8078-01 14 92487911 92487911 G A TRIP11 Missense_Mutation p.H193Y 0.22 deleterious(0.03) possibly_damaging(0.809) TCGA-BR-8078-01 14 92608661 92608661 T C CPSF2 Missense_Mutation p.V272A 0.33 deleterious(0) probably_damaging(0.992) TCGA-BR-8078-01 14 93118854 93118854 C T RIN3 Missense_Mutation p.A487V 0.33 tolerated(0.23) benign(0.299) TCGA-BR-8078-01 14 93154577 93154577 C T RIN3 Missense_Mutation p.R980W 0.29 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-BR-8078-01 14 93761188 93761188 T C BTBD7 Missense_Mutation p.T60A 0.35 tolerated(0.47) benign(0.004) TCGA-BR-8078-01 14 93813633 93813633 C T COX8C Missense_Mutation p.R7C 0.30 deleterious_low_confidence(0.02) benign(0.072) TCGA-BR-8078-01 14 95058423 95058423 C T SERPINA5 Silent p.D356D 0.25 TCGA-BR-8078-01 14 99865332 99865332 C T SETD3 Missense_Mutation p.R490H 0.37 tolerated(0.09) benign(0.365) TCGA-BR-8078-01 15 100331400 100331400 G A AC090825.1 5'Flank 0.29 TCGA-BR-8078-01 15 101606847 101606847 G A LRRK1 Missense_Mutation p.R1924H 0.25 tolerated(0.07) benign(0.007) TCGA-BR-8078-01 15 101938657 101938657 G A PCSK6 Silent p.D315D 0.24 TCGA-BR-8078-01 15 20663149 20663149 G A HERC2P3 RNA 0.21 TCGA-BR-8078-01 15 23335601 23335601 A T HERC2P2 RNA 0.12 TCGA-BR-8078-01 15 23932431 23932431 C T NDN 5'UTR 0.33 TCGA-BR-8078-01 15 24922914 24922914 A G NPAP1 Missense_Mutation p.S634G 0.25 deleterious(0.04) benign(0.017) TCGA-BR-8078-01 15 30024733 30024733 C T TJP1 Splice_Site p.X641_splice 0.26 TCGA-BR-8078-01 15 31362235 31362235 A G TRPM1 Missense_Mutation p.M110T 0.28 tolerated(0.16) benign(0.016) TCGA-BR-8078-01 15 31947326 31947326 G A OTUD7A Missense_Mutation p.P42S 0.30 deleterious(0.02) benign(0.178) TCGA-BR-8078-01 15 33256350 33256350 T - FMN1 Frame_Shift_Del p.K809Nfs*31 0.25 TCGA-BR-8078-01 15 35273805 35273807 AAA - ZNF770 In_Frame_Del p.F610del 0.38 TCGA-BR-8078-01 15 40581555 40581555 G A PLCB2 Missense_Mutation p.T1091M 0.31 deleterious(0.02) possibly_damaging(0.78) TCGA-BR-8078-01 15 40699905 40699905 C T IVD Silent p.S74S 0.23 TCGA-BR-8078-01 15 41507974 41507974 G A EXD1 Missense_Mutation p.A91V 0.32 deleterious(0) probably_damaging(0.999) TCGA-BR-8078-01 15 43552730 43552730 G A TGM5 Missense_Mutation p.R20W 0.28 deleterious(0.01) possibly_damaging(0.671) TCGA-BR-8078-01 15 43585153 43585153 C A TGM7 Splice_Site p.X65_splice 0.36 TCGA-BR-8078-01 15 43897020 43897020 C A STRC Missense_Mutation p.G1319W 0.26 deleterious(0) possibly_damaging(0.671) TCGA-BR-8078-01 15 45253731 45253731 A G C15orf43 Silent p.R99R 0.37 TCGA-BR-8078-01 15 45408763 45408763 C T DUOXA2 Silent p.F130F 0.18 TCGA-BR-8078-01 15 45898872 45898872 C T BLOC1S6 3'UTR 0.50 TCGA-BR-8078-01 15 48633714 48633714 A - DUT Frame_Shift_Del p.G214Vfs*17 0.27 TCGA-BR-8078-01 15 48796031 48796031 T G FBN1 Missense_Mutation p.E689A 0.29 benign(0.043) TCGA-BR-8078-01 15 50905919 50905919 C T TRPM7 Silent p.Q585Q 0.42 TCGA-BR-8078-01 15 51697025 51697025 T - GLDN 3'UTR 0.22 TCGA-BR-8078-01 15 52504010 52504011 - CA MYO5C Frame_Shift_Ins p.R1405Cfs*7 0.34 TCGA-BR-8078-01 15 54307549 54307549 C T UNC13C Nonsense_Mutation p.Q817* 0.23 TCGA-BR-8078-01 15 57489983 57489984 - A TCF12 Frame_Shift_Ins p.V183Sfs*21 0.32 TCGA-BR-8078-01 15 58902544 58902544 T - ADAM10 Frame_Shift_Del p.A660Qfs*29 0.19 TCGA-BR-8078-01 15 59146784 59146784 A - FAM63B Frame_Shift_Del p.N616Ifs*41 0.39 TCGA-BR-8078-01 15 59499291 59499291 C T LDHAL6B Missense_Mutation p.A51V 0.25 deleterious(0.02) benign(0.009) TCGA-BR-8078-01 15 60803702 60803702 C T RORA Silent p.P214P 0.35 TCGA-BR-8078-01 15 63967208 63967208 C T HERC1 Silent p.L2393L 0.31 TCGA-BR-8078-01 15 64045263 64045263 G C HERC1 Missense_Mutation p.T599S 0.35 possibly_damaging(0.875) TCGA-BR-8078-01 15 68479948 68479948 G A PIAS1 Silent p.S577S 0.26 TCGA-BR-8078-01 15 69072443 69072443 C A ANP32A Missense_Mutation p.D243Y 0.25 deleterious_low_confidence(0) unknown(0) TCGA-BR-8078-01 15 69747870 69747870 A - RPLP1 3'UTR 0.47 TCGA-BR-8078-01 15 71535347 71535347 G C THSD4 Missense_Mutation p.G275A 0.32 tolerated(0.61) benign(0.008) TCGA-BR-8078-01 15 75949395 75949395 G A SNX33 Missense_Mutation p.V522M 0.29 deleterious(0.02) probably_damaging(0.999) TCGA-BR-8078-01 15 76496111 76496111 A G C15orf27 Missense_Mutation p.M351V 0.38 tolerated_low_confidence(1) benign(0) TCGA-BR-8078-01 15 79750586 79750586 A - KIAA1024 Frame_Shift_Del p.S702Afs*11 0.32 TCGA-BR-8078-01 15 81636343 81636343 G A TMC3 Missense_Mutation p.A521V 0.28 tolerated(0.36) possibly_damaging(0.792) TCGA-BR-8078-01 15 83328384 83328384 C T AP3B2 Silent p.L1059L 0.27 TCGA-BR-8078-01 15 83658833 83658833 A C FAM103A1 3'UTR 0.18 TCGA-BR-8078-01 15 85382261 85382261 C T ALPK3 Missense_Mutation p.R321C 0.33 deleterious(0) probably_damaging(1) TCGA-BR-8078-01 15 85405990 85405990 T C ALPK3 Silent p.C1620C 0.34 TCGA-BR-8078-01 15 90190209 90190209 C - KIF7 Frame_Shift_Del p.G547Afs*5 0.34 TCGA-BR-8078-01 15 90904288 90904288 G T ZNF774 Missense_Mutation p.G409W 0.30 deleterious(0) probably_damaging(1) TCGA-BR-8078-01 15 91181743 91181743 G A CRTC3 Silent p.P444P 0.22 TCGA-BR-8078-01 15 91185178 91185178 A G CRTC3 Missense_Mutation p.S556G 0.23 tolerated(0.74) benign(0.02) TCGA-BR-8078-01 15 92706441 92706441 A - SLCO3A1 3'UTR 0.45 TCGA-BR-8078-01 15 93521592 93521592 T C CHD2 Silent p.H902H 0.36 TCGA-BR-8078-01 15 97328285 97328286 - C SPATA8 Frame_Shift_Ins p.L88Tfs*23 0.24 TCGA-BR-8078-01 15 98512505 98512505 G A ARRDC4 Missense_Mutation p.A260T 0.22 tolerated(0.14) benign(0.316) TCGA-BR-8078-01 16 1129867 1129867 G A SSTR5 Silent p.T333T 0.33 TCGA-BR-8078-01 16 11864672 11864674 AAG - ZC3H7A In_Frame_Del p.S358del 0.37 TCGA-BR-8078-01 16 1292268 1292268 C A TPSAB1 3'UTR 0.13 TCGA-BR-8078-01 16 15704908 15704908 G A KIAA0430 Silent p.I1225I 0.26 TCGA-BR-8078-01 16 16244559 16244559 C T ABCC6 Missense_Mutation p.E1427K 0.18 deleterious(0) probably_damaging(1) TCGA-BR-8078-01 16 17235115 17235115 G C XYLT1 Missense_Mutation p.D494E 0.06 deleterious(0) probably_damaging(0.983) TCGA-BR-8078-01 16 1877706 1877707 - G FAHD1 Frame_Shift_Ins p.E161* 0.26 TCGA-BR-8078-01 16 20990771 20990771 A G DNAH3 Missense_Mutation p.S2653P 0.43 deleterious(0) probably_damaging(0.999) TCGA-BR-8078-01 16 22926453 22926453 T A HS3ST2 Missense_Mutation p.I225N 0.28 deleterious(0) probably_damaging(0.977) TCGA-BR-8078-01 16 2373356 2373356 C T ABCA3 Intron 0.26 TCGA-BR-8078-01 16 24268045 24268045 C - CACNG3 5'UTR 0.28 TCGA-BR-8078-01 16 2570787 2570787 G T AMDHD2 Missense_Mutation p.R34L 0.23 deleterious(0.03) possibly_damaging(0.748) TCGA-BR-8078-01 16 2818141 2818141 T C SRRM2 Missense_Mutation p.S2538P 0.12 probably_damaging(0.993) TCGA-BR-8078-01 16 28507606 28507606 A G APOBR Missense_Mutation p.E415G 0.19 deleterious(0.05) possibly_damaging(0.607) TCGA-BR-8078-01 16 2868785 2868785 C T PRSS21 Missense_Mutation p.S122L 0.34 deleterious(0.03) benign(0.34) TCGA-BR-8078-01 16 28847350 28847350 G - ATXN2L Frame_Shift_Del p.Q1002Kfs*95 0.30 TCGA-BR-8078-01 16 29115615 29115615 A G CTB-134H23.3 RNA 0.60 TCGA-BR-8078-01 16 29675887 29675887 C T SPN Missense_Mutation p.R280W 0.44 deleterious(0.03) probably_damaging(0.942) TCGA-BR-8078-01 16 29918169 29918169 G T KCTD13 3'UTR 0.37 TCGA-BR-8078-01 16 3024375 3024375 C T PKMYT1 Silent p.E341E 0.17 TCGA-BR-8078-01 16 3073266 3073266 G - HCFC1R1 Frame_Shift_Del p.M84* 0.25 TCGA-BR-8078-01 16 3075953 3075954 AA - THOC6 Frame_Shift_Del p.K62Rfs*4 0.31 TCGA-BR-8078-01 16 30794413 30794413 G A ZNF629 Silent p.S412S 0.22 TCGA-BR-8078-01 16 30976311 30976311 G A SETD1A Silent p.E416E 0.27 TCGA-BR-8078-01 16 30998198 30998198 G A HSD3B7 Missense_Mutation p.R190H 0.18 deleterious(0) probably_damaging(0.999) TCGA-BR-8078-01 16 31072541 31072541 G A ZNF668 Missense_Mutation p.R593C 0.11 tolerated(0.08) benign(0.008) TCGA-BR-8078-01 16 31088810 31088810 C A ZNF646 Missense_Mutation p.L389I 0.35 deleterious(0) probably_damaging(0.996) TCGA-BR-8078-01 16 31373508 31373508 T C ITGAX Missense_Mutation p.M400T 0.35 deleterious(0) possibly_damaging(0.87) TCGA-BR-8078-01 16 320824 320824 T G RGS11 Missense_Mutation p.N329T 0.21 deleterious(0) possibly_damaging(0.897) TCGA-BR-8078-01 16 3254534 3254534 C T OR1F1 Silent p.G96G 0.32 TCGA-BR-8078-01 16 3254715 3254717 CTT - OR1F1 In_Frame_Del p.L158del 0.28 TCGA-BR-8078-01 16 32893940 32893940 G A RP11-989E6.3 5'Flank 0.14 TCGA-BR-8078-01 16 3708018 3708018 A - DNASE1 3'UTR 0.32 TCGA-BR-8078-01 16 424064 424064 C A TMEM8A Missense_Mutation p.G615W 0.39 deleterious(0.01) probably_damaging(0.994) TCGA-BR-8078-01 16 47162394 47162394 C T NETO2 Missense_Mutation p.R108Q 0.30 deleterious(0) probably_damaging(0.994) TCGA-BR-8078-01 16 47533705 47533705 G A PHKB Missense_Mutation p.G69S 0.05 deleterious(0) probably_damaging(1) TCGA-BR-8078-01 16 47733466 47733466 A G PHKB 3'UTR 0.40 TCGA-BR-8078-01 16 49315156 49315156 G A CBLN1 Missense_Mutation p.P74L 0.34 deleterious(0) probably_damaging(0.995) TCGA-BR-8078-01 16 50263343 50263343 C T PAPD5 3'UTR 0.44 TCGA-BR-8078-01 16 50338374 50338374 G - ADCY7 Frame_Shift_Del p.A493Rfs*14 0.24 TCGA-BR-8078-01 16 50357600 50357600 C T BRD7 Silent p.E447E 0.24 TCGA-BR-8078-01 16 50733500 50733500 T C NOD2 Missense_Mutation p.W59R 0.04 tolerated(0.12) benign(0.014) TCGA-BR-8078-01 16 50813911 50813911 G A CYLD Missense_Mutation p.G492S 0.21 deleterious(0) probably_damaging(1) TCGA-BR-8078-01 16 51175930 51175930 T - SALL1 Frame_Shift_Del p.N68Ifs*3 0.32 TCGA-BR-8078-01 16 5141836 5141836 T C FAM86A Missense_Mutation p.M101V 0.29 tolerated(0.37) benign(0.013) TCGA-BR-8078-01 16 53493431 53493431 G A RBL2 Silent p.V416V 0.32 TCGA-BR-8078-01 16 53683005 53683005 A T RPGRIP1L Missense_Mutation p.N725K 0.35 deleterious(0.04) benign(0.011) TCGA-BR-8078-01 16 55364284 55364284 T C IRX6 3'UTR 0.24 TCGA-BR-8078-01 16 56912999 56912999 C T SLC12A3 Missense_Mutation p.R399C 0.33 deleterious(0) probably_damaging(0.987) TCGA-BR-8078-01 16 56969317 56969317 A - HERPUD1 Frame_Shift_Del p.K78Nfs*11 0.25 TCGA-BR-8078-01 16 57110758 57110758 C T NLRC5 Silent p.V1593V 0.24 TCGA-BR-8078-01 16 57116443 57116444 - C NLRC5 3'UTR 0.23 TCGA-BR-8078-01 16 57503194 57503194 C T POLR2C Missense_Mutation p.R126W 0.35 deleterious(0) possibly_damaging(0.766) TCGA-BR-8078-01 16 57996884 57996884 C T CNGB1 Silent p.P125P 0.31 TCGA-BR-8078-01 16 58075662 58075662 G C MMP15 Missense_Mutation p.G351A 0.31 tolerated(0.22) benign(0.064) TCGA-BR-8078-01 16 58314324 58314324 T C PRSS54 Missense_Mutation p.D331G 0.40 tolerated(0.48) benign(0.085) TCGA-BR-8078-01 16 58589340 58589340 A - CNOT1 Frame_Shift_Del p.Q904Sfs*9 0.21 TCGA-BR-8078-01 16 58608623 58608623 C T CNOT1 Silent p.R623R 0.06 TCGA-BR-8078-01 16 628430 628430 G A PIGQ Missense_Mutation p.A332T 0.24 deleterious(0) possibly_damaging(0.905) TCGA-BR-8078-01 16 67645339 67645339 A - CTCF Frame_Shift_Del p.T204Qfs*18 0.22 TCGA-BR-8078-01 16 67980239 67980239 G T SLC12A4 Silent p.T816T 0.35 TCGA-BR-8078-01 16 69963383 69963383 G A WWP2 Missense_Mutation p.V423M 0.33 deleterious(0.01) probably_damaging(0.991) TCGA-BR-8078-01 16 70406016 70406016 A G DDX19A 3'UTR 0.38 TCGA-BR-8078-01 16 72137034 72137036 AAG - DHX38 In_Frame_Del p.K523del 0.24 TCGA-BR-8078-01 16 72822729 72822729 G A ZFHX3 Missense_Mutation p.P3149L 0.31 unknown(0) TCGA-BR-8078-01 16 72830902 72830903 - CT ZFHX3 Frame_Shift_Ins p.D1894Gfs*21 0.22 TCGA-BR-8078-01 16 72991721 72991721 G A ZFHX3 Missense_Mutation p.A775V 0.28 benign(0.046) TCGA-BR-8078-01 16 75512632 75512632 G A CHST6 Silent p.D365D 0.24 TCGA-BR-8078-01 16 75634035 75634035 A - ADAT1 3'UTR 0.31 TCGA-BR-8078-01 16 80667008 80667008 G A CDYL2 Missense_Mutation p.R248W 0.31 deleterious(0) benign(0.167) TCGA-BR-8078-01 16 80718567 80718567 C T CDYL2 Missense_Mutation p.G162S 0.30 tolerated(0.7) benign(0.001) TCGA-BR-8078-01 16 81929428 81929428 G A PLCG2 Silent p.G363G 0.30 TCGA-BR-8078-01 16 84036111 84036111 C - NECAB2 3'UTR 0.44 TCGA-BR-8078-01 16 85135923 85135924 - A FAM92B Frame_Shift_Ins p.C183Lfs*2 0.33 TCGA-BR-8078-01 16 88598420 88598420 C T ZFPM1 Silent p.F241F 0.27 TCGA-BR-8078-01 16 88599306 88599306 G A ZFPM1 Silent p.S384S 0.28 TCGA-BR-8078-01 16 89294007 89294007 T C ZNF778 Silent p.T409T 0.31 TCGA-BR-8078-01 16 89985930 89985930 C T MC1R Silent p.S88S 0.29 TCGA-BR-8078-01 16 9000392 9000392 G - USP7 Frame_Shift_Del p.T440Kfs*30 0.17 TCGA-BR-8078-01 17 10101644 10101644 G A GAS7 Missense_Mutation p.R22C 0.32 tolerated(0.05) possibly_damaging(0.498) TCGA-BR-8078-01 17 10408152 10408152 T - MYH1 Frame_Shift_Del p.N889Mfs*24 0.26 TCGA-BR-8078-01 17 10441138 10441138 C A MYH2 Missense_Mutation p.E477D 0.41 deleterious(0.01) benign(0.285) TCGA-BR-8078-01 17 10618720 10618720 A - TMEM220 3'UTR 0.24 TCGA-BR-8078-01 17 11886718 11886718 A G ZNF18 Missense_Mutation p.I253T 0.36 tolerated(0.41) benign(0.005) TCGA-BR-8078-01 17 1387489 1387489 C T MYO1C Missense_Mutation p.A62T 0.20 tolerated(0.07) benign(0.297) TCGA-BR-8078-01 17 15212064 15212064 G A TEKT3 Silent p.A391A 0.25 TCGA-BR-8078-01 17 15620464 15620464 A G ZNF286A Missense_Mutation p.I476V 0.26 tolerated(0.11) benign(0.042) TCGA-BR-8078-01 17 1636825 1636825 C T WDR81 Silent p.D1498D 0.29 TCGA-BR-8078-01 17 16526577 16526577 T C ZNF624 Silent p.S541S 0.24 TCGA-BR-8078-01 17 171135 171135 G A RPH3AL Missense_Mutation p.A50V 0.27 tolerated(0.05) benign(0.311) TCGA-BR-8078-01 17 17250190 17250190 C - NT5M Frame_Shift_Del p.R208Afs*34 0.48 TCGA-BR-8078-01 17 17931621 17931621 G A ATPAF2 Silent p.S83S 0.25 TCGA-BR-8078-01 17 18111551 18111551 G T ALKBH5 Missense_Mutation p.M342I 0.36 deleterious_low_confidence(0.01) probably_damaging(0.961) TCGA-BR-8078-01 17 18635377 18635377 G A TRIM16L Silent p.V131V 0.37 TCGA-BR-8078-01 17 20108263 20108263 A - SPECC1 Frame_Shift_Del p.N303Tfs*63 0.65 TCGA-BR-8078-01 17 21101693 21101693 C T TMEM11 Missense_Mutation p.A175T 0.06 tolerated(0.58) possibly_damaging(0.629) TCGA-BR-8078-01 17 2266394 2266394 G A SGSM2 Missense_Mutation p.R213H 0.54 deleterious(0.04) benign(0.294) TCGA-BR-8078-01 17 2371076 2371076 A - METTL16 Frame_Shift_Del p.F188Lfs*10 0.09 TCGA-BR-8078-01 17 2601720 2601720 G A CLUH Silent p.F439F 0.30 TCGA-BR-8078-01 17 2604055 2604055 G - CLUH Frame_Shift_Del p.Q326Rfs*80 0.28 TCGA-BR-8078-01 17 26666694 26666694 C T TNFAIP1 Silent p.H49H 0.36 TCGA-BR-8078-01 17 26854365 26854365 C - FOXN1 Frame_Shift_Del p.F231Sfs*71 0.34 TCGA-BR-8078-01 17 27030601 27030601 G - PROCA1 Frame_Shift_Del p.P329Qfs*82 0.23 TCGA-BR-8078-01 17 27052964 27052964 G C TLCD1 Missense_Mutation p.S51C 0.27 deleterious(0) probably_damaging(1) TCGA-BR-8078-01 17 27053070 27053070 T C TLCD1 Missense_Mutation p.T16A 0.38 tolerated(0.52) unknown(0) TCGA-BR-8078-01 17 27446421 27446421 C T MYO18A Silent p.R587R 0.27 TCGA-BR-8078-01 17 28886595 28886595 G A TBC1D29 5'UTR 0.22 TCGA-BR-8078-01 17 28964259 28964259 G A LRRC37BP1 RNA 0.18 TCGA-BR-8078-01 17 30687715 30687715 C T ZNF207 Nonsense_Mutation p.Q136* 0.19 TCGA-BR-8078-01 17 33592101 33592101 A - SLFN5 Frame_Shift_Del p.N625Tfs*6 0.24 TCGA-BR-8078-01 17 34074249 34074249 G T GAS2L2 Missense_Mutation p.P291T 0.20 tolerated(0.34) possibly_damaging(0.891) TCGA-BR-8078-01 17 34079505 34079505 C T GAS2L2 Missense_Mutation p.R122Q 0.33 deleterious(0) probably_damaging(1) TCGA-BR-8078-01 17 35300395 35300395 C - LHX1 Frame_Shift_Del p.E399Kfs*2 0.35 TCGA-BR-8078-01 17 36485586 36485586 T - GPR179 Frame_Shift_Del p.K1289Rfs*12 0.22 TCGA-BR-8078-01 17 36891730 36891730 C T PCGF2 Missense_Mutation p.D261N 0.50 deleterious(0.01) possibly_damaging(0.734) TCGA-BR-8078-01 17 37809936 37809936 G A STARD3 Missense_Mutation p.R51H 0.24 deleterious(0) probably_damaging(1) TCGA-BR-8078-01 17 37898534 37898535 CC - GRB7 Frame_Shift_Del p.S19Lfs*15 0.25 TCGA-BR-8078-01 17 38175815 38175815 G A MED24 Silent p.R979R 0.26 TCGA-BR-8078-01 17 38176148 38176148 G A MED24 Missense_Mutation p.R915C 0.36 deleterious(0.02) possibly_damaging(0.471) TCGA-BR-8078-01 17 38859835 38859836 - C KRT24 Frame_Shift_Ins p.S38Qfs*20 0.28 TCGA-BR-8078-01 17 38936017 38936017 G A KRT27 Nonsense_Mutation p.R261* 0.30 TCGA-BR-8078-01 17 39115014 39115014 A C KRT39 Missense_Mutation p.S439A 0.35 tolerated(0.27) benign(0.077) TCGA-BR-8078-01 17 3967836 3967836 C T ZZEF1 Missense_Mutation p.A1513T 0.25 tolerated(0.4) benign(0.001) TCGA-BR-8078-01 17 39767948 39767948 G A KRT16 Missense_Mutation p.A186V 0.26 deleterious(0.02) possibly_damaging(0.46) TCGA-BR-8078-01 17 40173579 40173579 A G NKIRAS2 Intron 0.35 TCGA-BR-8078-01 17 40265650 40265650 G A KAT2A 3'UTR 0.25 TCGA-BR-8078-01 17 40690427 40690427 G - NAGLU Frame_Shift_Del p.R203Efs*36 0.19 TCGA-BR-8078-01 17 41577385 41577385 G A DHX8 Missense_Mutation p.R487Q 0.35 deleterious(0) possibly_damaging(0.537) TCGA-BR-8078-01 17 42430031 42430031 C T GRN Silent p.G549G 0.32 TCGA-BR-8078-01 17 43911993 43911993 C T CRHR1 Missense_Mutation p.R400C 0.28 deleterious(0) probably_damaging(0.972) TCGA-BR-8078-01 17 44073996 44073996 C A MAPT Missense_Mutation p.T598N 0.15 deleterious(0) probably_damaging(0.996) TCGA-BR-8078-01 17 4457505 4457505 C T MYBBP1A Silent p.L121L 0.21 TCGA-BR-8078-01 17 45369787 45369787 C T ITGB3 Missense_Mutation p.R515W 0.08 deleterious(0.01) benign(0.403) TCGA-BR-8078-01 17 4607430 4607430 C T PELP1 5'Flank 0.33 TCGA-BR-8078-01 17 46608130 46608130 C T HOXB1 Missense_Mutation p.G46D 0.38 tolerated(0.51) benign(0.046) TCGA-BR-8078-01 17 46673726 46673726 G A HOXB6 3'UTR 0.27 TCGA-BR-8078-01 17 4688833 4688833 G A VMO1 Missense_Mutation p.R145C 0.39 deleterious(0) probably_damaging(0.979) TCGA-BR-8078-01 17 46933463 46933464 TT - CALCOCO2 Frame_Shift_Del p.F332* 0.29 TCGA-BR-8078-01 17 4718006 4718006 G A PLD2 Silent p.A391A 0.20 TCGA-BR-8078-01 17 48275526 48275526 G A COL1A1 Missense_Mutation p.A195V 0.30 unknown(0) TCGA-BR-8078-01 17 48632978 48632978 G A SPATA20 Silent p.V788V 0.19 TCGA-BR-8078-01 17 5036240 5036240 G C USP6 Missense_Mutation p.W77C 0.20 deleterious_low_confidence(0) possibly_damaging(0.759) TCGA-BR-8078-01 17 5087271 5087271 G A ZNF594 Missense_Mutation p.A94V 0.29 tolerated(0.06) benign(0.023) TCGA-BR-8078-01 17 5290124 5290124 T C NUP88 Missense_Mutation p.Q689R 0.06 deleterious(0) probably_damaging(0.997) TCGA-BR-8078-01 17 56344879 56344879 G T LPO Missense_Mutation p.R621S 0.41 tolerated(0.08) benign(0.02) TCGA-BR-8078-01 17 56604333 56604333 G A SEPT4 Missense_Mutation p.R38C 0.42 deleterious_low_confidence(0) possibly_damaging(0.88) TCGA-BR-8078-01 17 57808851 57808851 T C VMP1 Missense_Mutation p.M15T 0.17 tolerated(0.7) benign(0.027) TCGA-BR-8078-01 17 57944024 57944024 A G TUBD1 Missense_Mutation p.S341P 0.31 deleterious(0) possibly_damaging(0.866) TCGA-BR-8078-01 17 60767425 60767425 T C MRC2 Splice_Site p.X1248_splice 0.26 TCGA-BR-8078-01 17 60813653 60813653 C T MARCH10 Missense_Mutation p.E526K 0.33 deleterious(0) possibly_damaging(0.67) TCGA-BR-8078-01 17 61570796 61570796 G A ACE Splice_Site p.X971_splice 0.24 TCGA-BR-8078-01 17 61600747 61600747 G A KCNH6 5'Flank 0.36 TCGA-BR-8078-01 17 61781804 61781804 G - STRADA Frame_Shift_Del p.R333Gfs*42 0.28 TCGA-BR-8078-01 17 61912828 61912828 C T SMARCD2 Missense_Mutation p.A223T 0.40 tolerated(0.51) possibly_damaging(0.483) TCGA-BR-8078-01 17 62038770 62038770 T - SCN4A Frame_Shift_Del p.K543Sfs*23 0.25 TCGA-BR-8078-01 17 62291159 62291159 G A TEX2 Missense_Mutation p.S140L 0.28 tolerated(0.69) benign(0.005) TCGA-BR-8078-01 17 62517549 62517549 A - CEP95 Frame_Shift_Del p.A209Pfs*2 0.21 TCGA-BR-8078-01 17 62541844 62541855 AAAAAAAAGGGG - SMURF2 3'UTR 0.46 TCGA-BR-8078-01 17 63545650 63545650 G A AXIN2 Missense_Mutation p.T315M 0.20 deleterious(0) probably_damaging(0.999) TCGA-BR-8078-01 17 6371625 6371625 C T PITPNM3 Missense_Mutation p.A604T 0.21 tolerated(0.22) benign(0.001) TCGA-BR-8078-01 17 64880684 64880684 A C CACNG5 Missense_Mutation p.E159A 0.33 tolerated(0.14) possibly_damaging(0.734) TCGA-BR-8078-01 17 650444 650444 G C GEMIN4 Missense_Mutation p.T280S 0.04 tolerated(0.52) benign(0.028) TCGA-BR-8078-01 17 6547714 6547714 T - MED31 3'UTR 0.29 TCGA-BR-8078-01 17 65720242 65720242 C T NOL11 Silent p.D199D 0.40 TCGA-BR-8078-01 17 695114 695114 C A RNMTL1 Silent p.G356G 0.29 TCGA-BR-8078-01 17 7139475 7139475 T C PHF23 Silent p.E257E 0.35 TCGA-BR-8078-01 17 72540750 72540750 G A CD300C Missense_Mutation p.P133L 0.23 deleterious(0.01) probably_damaging(0.996) TCGA-BR-8078-01 17 73235069 73235069 C G GGA3 Missense_Mutation p.V626L 0.27 deleterious(0.04) probably_damaging(0.997) TCGA-BR-8078-01 17 73236985 73236985 C T GGA3 Missense_Mutation p.R367Q 0.40 tolerated(0.59) benign(0.336) TCGA-BR-8078-01 17 73495057 73495057 G A KIAA0195 Missense_Mutation p.V1298I 0.33 tolerated(0.66) benign(0.003) TCGA-BR-8078-01 17 73564738 73564738 C A LLGL2 Silent p.A406A 0.17 TCGA-BR-8078-01 17 73663429 73663429 C T SAP30BP 5'UTR 0.41 TCGA-BR-8078-01 17 73922166 73922166 C T FBF1 Silent p.P257P 0.32 TCGA-BR-8078-01 17 74084972 74084972 C A EXOC7 Missense_Mutation p.E411D 0.48 tolerated(0.48) benign(0.001) TCGA-BR-8078-01 17 74134113 74134113 C T FOXJ1 Missense_Mutation p.R196H 0.31 deleterious(0) probably_damaging(0.918) TCGA-BR-8078-01 17 74902116 74902116 G A MGAT5B Missense_Mutation p.G302D 0.21 deleterious(0) probably_damaging(1) TCGA-BR-8078-01 17 74942514 74942514 C T MGAT5B Silent p.H644H 0.31 TCGA-BR-8078-01 17 7559161 7559161 G A ATP1B2 Missense_Mutation p.R274Q 0.23 deleterious(0.02) possibly_damaging(0.902) TCGA-BR-8078-01 17 76117721 76117721 C T TMC6 Silent p.V433V 0.38 TCGA-BR-8078-01 17 76134254 76134256 CTT - TMC8 In_Frame_Del p.F507del 0.43 TCGA-BR-8078-01 17 76210416 76210416 C - BIRC5 Frame_Shift_Del p.P8Lfs*112 0.30 TCGA-BR-8078-01 17 7678253 7678253 A - DNAH2 Frame_Shift_Del p.K1561Nfs*9 0.21 TCGA-BR-8078-01 17 7678590 7678591 - G DNAH2 Frame_Shift_Ins p.M1586Dfs*10 0.22 TCGA-BR-8078-01 17 7689512 7689512 T G DNAH2 Missense_Mutation p.V2067G 0.07 possibly_damaging(0.703) TCGA-BR-8078-01 17 78320825 78320825 G A RNF213 Missense_Mutation p.G2897D 0.30 probably_damaging(1) TCGA-BR-8078-01 17 7834015 7834015 G A TRAPPC1 Missense_Mutation p.P116L 0.32 tolerated(0.27) benign(0.005) TCGA-BR-8078-01 17 78346918 78346918 G A RNF213 Missense_Mutation p.G4299S 0.36 possibly_damaging(0.755) TCGA-BR-8078-01 17 7852830 7852830 C - CNTROB 3'UTR 0.24 TCGA-BR-8078-01 17 79205498 79205498 G - ENTHD2 Intron 0.41 TCGA-BR-8078-01 17 79409593 79409593 C - RP11-1055B8.7 Frame_Shift_Del p.F408Sfs*37 0.22 TCGA-BR-8078-01 17 79860700 79860700 G A NPB 3'UTR 0.27 TCGA-BR-8078-01 17 8013440 8013440 G T ALOXE3 Silent p.R557R 0.15 TCGA-BR-8078-01 17 80616484 80616484 C T RAB40B Missense_Mutation p.V150M 0.38 tolerated(1) benign(0.061) TCGA-BR-8078-01 17 80885144 80885144 C A TBCD Missense_Mutation p.L852M 0.19 deleterious(0.04) possibly_damaging(0.696) TCGA-BR-8078-01 17 8141829 8141829 G - CTC1 Frame_Shift_Del p.L106Cfs*9 0.30 TCGA-BR-8078-01 17 8172400 8172400 G - PFAS Frame_Shift_Del p.G1280Afs*38 0.28 TCGA-BR-8078-01 18 13731813 13731813 A C RNMT Missense_Mutation p.E99D 0.33 tolerated(0.35) benign(0.002) TCGA-BR-8078-01 18 14105975 14105975 T C ZNF519 Silent p.K188K 0.33 TCGA-BR-8078-01 18 14478622 14478622 T C CXADRP3 RNA 0.23 TCGA-BR-8078-01 18 14478662 14478662 T - CXADRP3 RNA 0.18 TCGA-BR-8078-01 18 19995559 19995559 A G CTAGE1 Missense_Mutation p.F739S 0.30 deleterious(0.03) benign(0) TCGA-BR-8078-01 18 20572907 20572908 - A RBBP8 Frame_Shift_Ins p.T375Nfs*2 0.21 TCGA-BR-8078-01 18 22008870 22008870 C A IMPACT Missense_Mutation p.P68H 0.19 deleterious(0) probably_damaging(0.997) TCGA-BR-8078-01 18 22804319 22804319 T C ZNF521 Missense_Mutation p.Q1188R 0.37 tolerated_low_confidence(0.06) benign(0.001) TCGA-BR-8078-01 18 28669460 28669461 TC - DSC2 Frame_Shift_Del p.D191Hfs*13 0.21 TCGA-BR-8078-01 18 30257165 30257165 A G KLHL14 Missense_Mutation p.Y573H 0.23 deleterious(0) possibly_damaging(0.478) TCGA-BR-8078-01 18 331763 331763 T - COLEC12 Frame_Shift_Del p.K656Nfs*4 0.34 TCGA-BR-8078-01 18 33694127 33694127 G A SLC39A6 Silent p.V592V 0.25 TCGA-BR-8078-01 18 34349297 34349297 T A FHOD3 Missense_Mutation p.I1382N 0.22 deleterious(0) probably_damaging(0.993) TCGA-BR-8078-01 18 39637886 39637886 G A PIK3C3 Missense_Mutation p.R768Q 0.30 deleterious(0) probably_damaging(0.999) TCGA-BR-8078-01 18 40857246 40857246 T - SYT4 Frame_Shift_Del p.M1? 0.31 TCGA-BR-8078-01 18 43207012 43207012 A G SLC14A2 Missense_Mutation p.I141V 0.38 deleterious(0.05) benign(0.012) TCGA-BR-8078-01 18 44470593 44470593 T - PIAS2 Frame_Shift_Del p.N150Ifs*17 0.35 TCGA-BR-8078-01 18 45567076 45567076 C - ZBTB7C Frame_Shift_Del p.E135Rfs*87 0.29 TCGA-BR-8078-01 18 47777861 47777861 G A CCDC11 Missense_Mutation p.A256V 0.27 deleterious(0) probably_damaging(0.917) TCGA-BR-8078-01 18 5415928 5415928 G A EPB41L3 Silent p.Y652Y 0.24 TCGA-BR-8078-01 18 56008369 56008369 C T NEDD4L Nonsense_Mutation p.R409* 0.36 TCGA-BR-8078-01 18 5891837 5891837 G T TMEM200C Missense_Mutation p.P76T 0.48 deleterious(0) probably_damaging(0.995) TCGA-BR-8078-01 18 59158026 59158026 C T CDH20 Silent p.V80V 0.18 TCGA-BR-8078-01 18 59482960 59482960 C T RNF152 3'UTR 0.28 TCGA-BR-8078-01 18 59483784 59483784 G T RNF152 5'UTR 0.44 TCGA-BR-8078-01 18 5956194 5956194 G A L3MBTL4 3'UTR 0.25 TCGA-BR-8078-01 18 61584738 61584739 - A SERPINB10 Frame_Shift_Ins p.R76Kfs*16 0.47 TCGA-BR-8078-01 18 672795 672795 A G ENOSF1 3'Flank 0.09 TCGA-BR-8078-01 18 67684875 67684875 C T RTTN Silent p.L2063L 0.42 TCGA-BR-8078-01 18 67869182 67869182 A G RTTN Silent p.F145F 0.30 TCGA-BR-8078-01 18 70205457 70205457 C - CBLN2 Frame_Shift_Del p.G210Afs*21 0.32 TCGA-BR-8078-01 18 7037643 7037643 G A LAMA1 Silent p.T557T 0.32 TCGA-BR-8078-01 18 70417577 70417577 G A NETO1 Missense_Mutation p.R421W 0.29 deleterious(0.03) probably_damaging(0.957) TCGA-BR-8078-01 18 72185805 72185805 C T CNDP2 Silent p.H380H 0.32 TCGA-BR-8078-01 18 76753717 76753717 G A SALL3 Missense_Mutation p.G576S 0.28 tolerated(0.49) benign(0.029) TCGA-BR-8078-01 18 77090075 77090075 G A ATP9B Missense_Mutation p.V667M 0.27 deleterious(0) probably_damaging(0.986) TCGA-BR-8078-01 18 77895658 77895658 C T ADNP2 Missense_Mutation p.H788Y 0.07 deleterious(0) probably_damaging(0.999) TCGA-BR-8078-01 18 8825313 8825314 - C SOGA2 Frame_Shift_Ins p.L1271Tfs*12 0.18 TCGA-BR-8078-01 18 9255185 9255186 - A ANKRD12 Frame_Shift_Ins p.M643Nfs*3 0.27 TCGA-BR-8078-01 18 9256062 9256062 A - ANKRD12 Frame_Shift_Del p.N935Ifs*24 0.32 TCGA-BR-8078-01 19 10227826 10227826 G - EIF3G Frame_Shift_Del p.G114Dfs*15 0.26 TCGA-BR-8078-01 19 10504054 10504054 G A CDC37 Missense_Mutation p.R264W 0.27 deleterious(0) probably_damaging(0.965) TCGA-BR-8078-01 19 11169473 11169473 C T SMARCA4 Missense_Mutation p.R1515C 0.17 probably_damaging(0.999) TCGA-BR-8078-01 19 11213391 11213391 G A LDLR Missense_Mutation p.R81H 0.24 tolerated(0.2) benign(0.215) TCGA-BR-8078-01 19 11470601 11470601 C - DKFZP761J1410 Frame_Shift_Del p.P97Qfs*29 0.37 TCGA-BR-8078-01 19 11577604 11577605 - C ELAVL3 Frame_Shift_Ins p.A18Gfs*18 0.44 TCGA-BR-8078-01 19 11660584 11660584 G A CNN1 Missense_Mutation p.A290T 0.08 tolerated_low_confidence(0.44) unknown(0) TCGA-BR-8078-01 19 12542364 12542364 A - ZNF443 Frame_Shift_Del p.W208Gfs*34 0.20 TCGA-BR-8078-01 19 1257111 1257111 A G MIDN Missense_Mutation p.Y416C 0.33 deleterious(0) possibly_damaging(0.759) TCGA-BR-8078-01 19 12805508 12805508 C T FBXW9 Missense_Mutation p.R193Q 0.30 deleterious(0) probably_damaging(0.983) TCGA-BR-8078-01 19 12882099 12882099 G A HOOK2 Missense_Mutation p.A212V 0.30 tolerated(0.45) benign(0.003) TCGA-BR-8078-01 19 1299833 1299833 G A EFNA2 Silent p.L177L 0.62 TCGA-BR-8078-01 19 13039163 13039165 GAA - FARSA In_Frame_Del p.F278del 0.29 TCGA-BR-8078-01 19 13368350 13368350 C T CACNA1A Silent p.S1468S 0.19 TCGA-BR-8078-01 19 13565925 13565925 C T CACNA1A Missense_Mutation p.R132Q 0.40 benign(0.417) TCGA-BR-8078-01 19 1376668 1376668 C T MUM1 3'UTR 0.31 TCGA-BR-8078-01 19 13941742 13941742 C T ZSWIM4 Missense_Mutation p.R950W 0.38 deleterious(0) unknown(0) TCGA-BR-8078-01 19 14000612 14000612 C T C19orf57 Missense_Mutation p.A353T 0.32 tolerated(0.22) possibly_damaging(0.908) TCGA-BR-8078-01 19 14269241 14269241 A C LPHN1 Missense_Mutation p.V763G 0.29 deleterious(0) probably_damaging(1) TCGA-BR-8078-01 19 14507207 14507207 G A CD97 Missense_Mutation p.V134I 0.20 tolerated(0.71) benign(0.001) TCGA-BR-8078-01 19 14910543 14910543 T C OR7C1 Missense_Mutation p.M136V 0.26 deleterious_low_confidence(0.01) benign(0.081) TCGA-BR-8078-01 19 15224500 15224501 - C SYDE1 Frame_Shift_Ins p.S648Efs*35 0.33 TCGA-BR-8078-01 19 1581146 1581146 G A MBD3 Missense_Mutation p.L208F 0.39 deleterious(0) probably_damaging(1) TCGA-BR-8078-01 19 15918460 15918460 G - OR10H1 Frame_Shift_Del p.L130Cfs*7 0.26 TCGA-BR-8078-01 19 16045144 16045144 A G CYP4F11 Silent p.V25V 0.40 TCGA-BR-8078-01 19 1612308 1612308 G A TCF3 Intron 0.32 TCGA-BR-8078-01 19 16860457 16860457 C - NWD1 Frame_Shift_Del p.L337Wfs*14 0.21 TCGA-BR-8078-01 19 17373608 17373608 G A USHBP1 Missense_Mutation p.A132V 0.40 tolerated(0.15) benign(0.116) TCGA-BR-8078-01 19 17612144 17612144 G A SLC27A1 Missense_Mutation p.A567T 0.20 tolerated(0.56) benign(0.002) TCGA-BR-8078-01 19 17743609 17743609 C T UNC13A Missense_Mutation p.R1137H 0.36 tolerated(0.15) benign(0.003) TCGA-BR-8078-01 19 17845108 17845108 G A MAP1S Silent p.S1017S 0.19 TCGA-BR-8078-01 19 1796734 1796734 G A ATP8B3 Missense_Mutation p.R577W 0.37 deleterious(0) possibly_damaging(0.892) TCGA-BR-8078-01 19 18327613 18327613 C A PDE4C Missense_Mutation p.D475Y 0.23 deleterious(0) probably_damaging(0.99) TCGA-BR-8078-01 19 18709685 18709685 T C CRLF1 Missense_Mutation p.S142G 0.27 deleterious(0.01) benign(0.396) TCGA-BR-8078-01 19 19221753 19221753 G - SLC25A42 3'UTR 0.25 TCGA-BR-8078-01 19 19381886 19381886 G A TM6SF2 Silent p.F48F 0.19 TCGA-BR-8078-01 19 19675819 19675819 G A PBX4 Missense_Mutation p.T283M 0.31 deleterious(0.04) benign(0.012) TCGA-BR-8078-01 19 19749285 19749285 C T GMIP Missense_Mutation p.A182T 0.14 tolerated(0.27) benign(0.031) TCGA-BR-8078-01 19 20228702 20228702 A - ZNF90 Frame_Shift_Del p.G116Vfs*22 0.26 TCGA-BR-8078-01 19 2099002 2099002 T C IZUMO4 Silent p.P194P 0.22 TCGA-BR-8078-01 19 21493361 21493361 T C ZNF708 Silent p.A24A 0.29 TCGA-BR-8078-01 19 23159500 23159500 G T ZNF728 Silent p.S213S 0.25 TCGA-BR-8078-01 19 32845552 32845552 G A ZNF507 Missense_Mutation p.D606N 0.08 deleterious(0.01) probably_damaging(0.956) TCGA-BR-8078-01 19 33482773 33482773 C T RHPN2 Missense_Mutation p.A534T 0.08 deleterious(0.04) benign(0.013) TCGA-BR-8078-01 19 34263827 34263827 G A CHST8 Silent p.S378S 0.27 TCGA-BR-8078-01 19 34916951 34916951 C T PDCD2L Missense_Mutation p.P335S 0.21 tolerated(0.15) possibly_damaging(0.733) TCGA-BR-8078-01 19 3542859 3542859 G - MFSD12 Frame_Shift_Del p.L513Wfs*30 0.33 TCGA-BR-8078-01 19 35719208 35719208 T G FAM187B Silent p.R126R 0.34 TCGA-BR-8078-01 19 35801066 35801066 T C MAG Splice_Site p.X507_splice 0.23 TCGA-BR-8078-01 19 36033263 36033264 - A GAPDHS Frame_Shift_Ins p.Y165Ifs*44 0.22 TCGA-BR-8078-01 19 36128120 36128120 G A RBM42 Missense_Mutation p.R399H 0.11 deleterious(0.01) unknown(0) TCGA-BR-8078-01 19 36558217 36558217 G A WDR62 Missense_Mutation p.V191I 0.27 tolerated(0.23) benign(0.094) TCGA-BR-8078-01 19 3779589 3779589 C T MATK Missense_Mutation p.R291H 0.24 deleterious(0.04) probably_damaging(0.932) TCGA-BR-8078-01 19 37974994 37974994 T - ZNF570 Frame_Shift_Del p.F158Lfs*25 0.25 TCGA-BR-8078-01 19 38102620 38102620 A - ZNF540 Frame_Shift_Del p.M149Cfs*12 0.20 TCGA-BR-8078-01 19 38200708 38200708 C T ZNF607 Missense_Mutation p.G9R 0.45 tolerated(0.77) benign(0) TCGA-BR-8078-01 19 38230302 38230302 A G ZNF573 Silent p.C363C 0.33 TCGA-BR-8078-01 19 38572684 38572684 G A SIPA1L3 Missense_Mutation p.G160D 0.34 tolerated(0.24) possibly_damaging(0.552) TCGA-BR-8078-01 19 38874032 38874032 C - PSMD8 3'UTR 0.24 TCGA-BR-8078-01 19 39218595 39218595 G A ACTN4 Missense_Mutation p.G783R 0.33 tolerated(0.11) probably_damaging(1) TCGA-BR-8078-01 19 39914556 39914556 C T PLEKHG2 Missense_Mutation p.P928L 0.27 tolerated_low_confidence(1) benign(0) TCGA-BR-8078-01 19 39914847 39914847 A C PLEKHG2 Missense_Mutation p.E1025A 0.31 deleterious_low_confidence(0.01) benign(0.014) TCGA-BR-8078-01 19 39955492 39955492 G A SUPT5H Missense_Mutation p.V227M 0.34 deleterious(0) probably_damaging(0.922) TCGA-BR-8078-01 19 39971319 39971319 G C TIMM50 Silent p.G45G 0.18 TCGA-BR-8078-01 19 39998592 39998592 G A DLL3 Missense_Mutation p.R599H 0.36 tolerated(1) benign(0) TCGA-BR-8078-01 19 40889761 40889761 G A HIPK4 Missense_Mutation p.R251C 0.21 deleterious(0.04) benign(0.051) TCGA-BR-8078-01 19 40993659 40993659 C T SPTBN4 Silent p.L75L 0.15 TCGA-BR-8078-01 19 41306783 41306783 G - EGLN2 Frame_Shift_Del p.C104Afs*47 0.13 TCGA-BR-8078-01 19 41631481 41631481 T - CYP2F1 Frame_Shift_Del p.L414Wfs*57 0.18 TCGA-BR-8078-01 19 41812469 41812469 A G HNRNPUL1 Nonstop_Mutation p.*857Wext*3 0.14 TCGA-BR-8078-01 19 41920016 41920016 C T BCKDHA Silent p.A146A 0.17 TCGA-BR-8078-01 19 42828932 42828932 G A TMEM145 Missense_Mutation p.R482H 0.50 tolerated_low_confidence(0.13) benign(0.051) TCGA-BR-8078-01 19 42847703 42847703 G - MEGF8 Frame_Shift_Del p.Y532Tfs*9 0.33 TCGA-BR-8078-01 19 42914870 42914870 G A LIPE Silent p.G336G 0.59 TCGA-BR-8078-01 19 4298063 4298063 G A TMIGD2 Missense_Mutation p.A109V 0.09 tolerated(0.3) benign(0.022) TCGA-BR-8078-01 19 43864496 43864496 G A CD177 3'UTR 0.14 TCGA-BR-8078-01 19 44377220 44377220 T C ZNF404 Silent p.P382P 0.18 TCGA-BR-8078-01 19 44611764 44611764 T C ZNF224 Missense_Mutation p.F484S 0.18 deleterious(0) benign(0.304) TCGA-BR-8078-01 19 45406424 45406424 T C TOMM40 Nonstop_Mutation p.*362Rext*59 0.09 TCGA-BR-8078-01 19 45762390 45762390 T C MARK4 Silent p.I65I 0.51 TCGA-BR-8078-01 19 45976070 45976070 C - FOSB Frame_Shift_Del p.N275Tfs*2 0.31 TCGA-BR-8078-01 19 46180362 46180362 C A GIPR Silent p.G263G 0.44 TCGA-BR-8078-01 19 46215278 46215278 C T FBXO46 Silent p.A492A 0.22 TCGA-BR-8078-01 19 46330880 46330880 C T SYMPK Missense_Mutation p.S690N 0.33 tolerated(0.14) benign(0.01) TCGA-BR-8078-01 19 46519581 46519581 C T CCDC61 Missense_Mutation p.R341C 0.11 deleterious(0.02) probably_damaging(0.942) TCGA-BR-8078-01 19 4703929 4703929 G A DPP9 Silent p.G246G 0.33 TCGA-BR-8078-01 19 47880430 47880430 C T DHX34 Silent p.Y891Y 0.39 TCGA-BR-8078-01 19 48198190 48198190 G - GLTSCR1 Frame_Shift_Del p.A979Pfs*67 0.40 TCGA-BR-8078-01 19 48519210 48519210 C A ELSPBP1 Missense_Mutation p.S90Y 0.26 deleterious(0.01) possibly_damaging(0.485) TCGA-BR-8078-01 19 48588317 48588317 A - PLA2G4C Frame_Shift_Del p.F291Lfs*5 0.21 TCGA-BR-8078-01 19 48660365 48660365 C T LIG1 Silent p.P92P 0.46 TCGA-BR-8078-01 19 48789818 48789818 T - ZNF114 Frame_Shift_Del p.Y315Ifs*6 0.20 TCGA-BR-8078-01 19 49131657 49131657 C - SPHK2 Intron 0.15 TCGA-BR-8078-01 19 4932935 4932935 C A MIR4747 3'Flank 0.27 TCGA-BR-8078-01 19 49573738 49573738 A - KCNA7 Frame_Shift_Del p.F318Sfs*36 0.32 TCGA-BR-8078-01 19 49656780 49656780 T C HRC Missense_Mutation p.E572G 0.17 deleterious(0.04) benign(0.02) TCGA-BR-8078-01 19 49938077 49938077 C T SLC17A7 Missense_Mutation p.R166H 0.15 tolerated(0.07) benign(0.187) TCGA-BR-8078-01 19 50173481 50173481 G A BCL2L12 Silent p.S230S 0.34 TCGA-BR-8078-01 19 50266482 50266482 G A TSKS Missense_Mutation p.T8M 0.48 deleterious(0) probably_damaging(0.999) TCGA-BR-8078-01 19 50270389 50270389 T G AP2A1 5'Flank 0.10 TCGA-BR-8078-01 19 5144107 5144107 G A KDM4B Missense_Mutation p.D894N 0.37 benign(0.079) TCGA-BR-8078-01 19 5144277 5144277 G A KDM4B Missense_Mutation p.V919M 0.46 possibly_damaging(0.868) TCGA-BR-8078-01 19 51471416 51471416 C A KLK6 Intron 0.67 TCGA-BR-8078-01 19 51918574 51918574 C A SIGLEC10 Missense_Mutation p.Q397H 0.18 tolerated(0.11) benign(0.114) TCGA-BR-8078-01 19 5222849 5222849 G A PTPRS Missense_Mutation p.A985V 0.27 tolerated(0.29) possibly_damaging(0.688) TCGA-BR-8078-01 19 5244269 5244269 C T PTPRS Missense_Mutation p.V405I 0.23 tolerated(0.08) probably_damaging(0.989) TCGA-BR-8078-01 19 52468751 52468751 T C ZNF350 Missense_Mutation p.I319V 0.17 tolerated(0.82) benign(0.248) TCGA-BR-8078-01 19 52869533 52869533 C T ZNF610 Missense_Mutation p.S301L 0.16 deleterious(0.01) benign(0.158) TCGA-BR-8078-01 19 53270553 53270553 T - ZNF600 Frame_Shift_Del p.K152Nfs*6 0.20 TCGA-BR-8078-01 19 53644231 53644231 C A ZNF347 Missense_Mutation p.R618L 0.51 tolerated(0.05) benign(0.113) TCGA-BR-8078-01 19 53911306 53911306 G A ZNF765 Silent p.K166K 0.25 TCGA-BR-8078-01 19 54299272 54299272 C A NLRP12 Missense_Mutation p.C980F 0.21 deleterious(0) unknown(0) TCGA-BR-8078-01 19 54313572 54313572 C T NLRP12 Silent p.P447P 0.51 TCGA-BR-8078-01 19 54394937 54394937 C T PRKCG Missense_Mutation p.A180V 0.49 deleterious(0) possibly_damaging(0.895) TCGA-BR-8078-01 19 54401306 54401306 C T PRKCG Missense_Mutation p.R345C 0.60 deleterious(0.01) possibly_damaging(0.772) TCGA-BR-8078-01 19 5456563 5456563 C T ZNRF4 Missense_Mutation p.S354L 0.23 tolerated(0.15) benign(0.145) TCGA-BR-8078-01 19 54667579 54667579 C A TMC4 Missense_Mutation p.G391V 0.51 tolerated(0.7) benign(0) TCGA-BR-8078-01 19 54844919 54844919 G - LILRA4 Frame_Shift_Del p.P475Qfs*69 0.15 TCGA-BR-8078-01 19 55812995 55812995 T C BRSK1 Missense_Mutation p.M265T 0.23 deleterious(0.01) benign(0.168) TCGA-BR-8078-01 19 55889366 55889366 T C TMEM190 Missense_Mutation p.L110P 0.09 deleterious_low_confidence(0) probably_damaging(0.955) TCGA-BR-8078-01 19 55966406 55966406 C A ISOC2 Missense_Mutation p.G179W 0.59 deleterious(0.01) probably_damaging(0.961) TCGA-BR-8078-01 19 56103953 56103953 G A FIZ1 Missense_Mutation p.R452C 0.19 deleterious(0) probably_damaging(0.985) TCGA-BR-8078-01 19 56156448 56156448 C T ZNF581 Missense_Mutation p.R171C 0.57 deleterious(0) probably_damaging(0.997) TCGA-BR-8078-01 19 56235376 56235376 T C NLRP9 Missense_Mutation p.K710R 0.20 tolerated(0.37) benign(0.029) TCGA-BR-8078-01 19 57133862 57133862 G A ZNF71 Missense_Mutation p.V403M 0.62 deleterious(0.02) possibly_damaging(0.616) TCGA-BR-8078-01 19 57838089 57838089 C A ZNF543 Silent p.S78S 0.67 TCGA-BR-8078-01 19 57984642 57984642 C A ZNF772 Nonstop_Mutation p.*490Yext*4 0.15 TCGA-BR-8078-01 19 58945229 58945229 A G ZNF132 Missense_Mutation p.S528P 0.17 deleterious(0.01) probably_damaging(0.994) TCGA-BR-8078-01 19 59073500 59073500 C T MZF1 Missense_Mutation p.G715D 0.50 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8078-01 19 6306699 6306699 T C ACER1 3'UTR 0.31 TCGA-BR-8078-01 19 6427487 6427487 C T SLC25A41 Missense_Mutation p.R217H 0.33 deleterious(0.04) probably_damaging(0.956) TCGA-BR-8078-01 19 6468083 6468083 G A DENND1C Missense_Mutation p.P613L 0.53 tolerated_low_confidence(0.14) benign(0.008) TCGA-BR-8078-01 19 7527040 7527040 C T ARHGEF18 Missense_Mutation p.R631W 0.35 deleterious(0) probably_damaging(0.981) TCGA-BR-8078-01 19 761663 761663 G T MISP Missense_Mutation p.E650D 0.22 deleterious(0.02) probably_damaging(0.923) TCGA-BR-8078-01 19 7987438 7987438 C - SNAPC2 Frame_Shift_Del p.Q267Sfs*38 0.30 TCGA-BR-8078-01 19 8046031 8046031 G A ELAVL1 Missense_Mutation p.A71V 0.30 tolerated(0.09) benign(0.254) TCGA-BR-8078-01 19 807901 807901 C T PTBP1 Silent p.F384F 0.19 TCGA-BR-8078-01 19 8171112 8171112 C T FBN3 Missense_Mutation p.D1565N 0.27 tolerated(0.24) benign(0.36) TCGA-BR-8078-01 19 8656952 8656952 C T ADAMTS10 Silent p.S541S 0.23 TCGA-BR-8078-01 19 9069345 9069345 T C MUC16 Missense_Mutation p.Q6034R 0.25 unknown(0) TCGA-BR-8078-01 19 9236991 9236992 AG - OR7G3 Frame_Shift_Del p.S212Wfs*24 0.24 TCGA-BR-8078-01 19 990308 990308 G A WDR18 Missense_Mutation p.G181S 0.19 deleterious(0.04) probably_damaging(0.998) TCGA-BR-8078-01 1 100551134 100551134 T C SASS6 Missense_Mutation p.I609V 0.23 tolerated(0.25) possibly_damaging(0.55) TCGA-BR-8078-01 1 100588802 100588802 A - SASS6 Frame_Shift_Del p.L57Yfs*14 0.31 TCGA-BR-8078-01 1 100964501 100964501 C T CDC14A Missense_Mutation p.R480W 0.27 deleterious_low_confidence(0) possibly_damaging(0.858) TCGA-BR-8078-01 1 100964650 100964650 T C CDC14A Silent p.P529P 0.36 TCGA-BR-8078-01 1 10195195 10195195 G A UBE4B Silent p.T725T 0.41 TCGA-BR-8078-01 1 109358853 109358853 A G AKNAD1 Silent p.I817I 0.29 TCGA-BR-8078-01 1 109795502 109795502 G A CELSR2 Missense_Mutation p.S934N 0.09 deleterious(0.03) possibly_damaging(0.599) TCGA-BR-8078-01 1 109849545 109849545 C T MYBPHL Silent p.A23A 0.35 TCGA-BR-8078-01 1 110031548 110031548 A G ATXN7L2 Missense_Mutation p.N288S 0.27 tolerated(0.65) benign(0.01) TCGA-BR-8078-01 1 11015224 11015224 C T C1orf127 Silent p.S266S 0.32 TCGA-BR-8078-01 1 110563414 110563414 T C AHCYL1 Silent p.D509D 0.25 TCGA-BR-8078-01 1 110765721 110765721 C T KCNC4 Missense_Mutation p.R272W 0.28 tolerated(0.08) possibly_damaging(0.784) TCGA-BR-8078-01 1 11128120 11128120 T - EXOSC10 Frame_Shift_Del p.I858Lfs*? 0.24 TCGA-BR-8078-01 1 111854340 111854340 G A CHIA Missense_Mutation p.G19S 0.27 tolerated(0.07) probably_damaging(1) TCGA-BR-8078-01 1 112524322 112524322 C T KCND3 Missense_Mutation p.E343K 0.27 deleterious(0) possibly_damaging(0.635) TCGA-BR-8078-01 1 113232213 113232213 G A MOV10 Missense_Mutation p.R173Q 0.24 tolerated(0.29) benign(0.017) TCGA-BR-8078-01 1 114439156 114439156 G A AP4B1 Intron 0.28 TCGA-BR-8078-01 1 115829258 115829258 G T NGF Missense_Mutation p.S53R 0.28 tolerated(0.51) benign(0.016) TCGA-BR-8078-01 1 117078587 117078587 C T CD58 Missense_Mutation p.G210S 0.34 tolerated(0.08) possibly_damaging(0.776) TCGA-BR-8078-01 1 1248005 1248005 G A CPSF3L Missense_Mutation p.S463L 0.40 deleterious(0.01) possibly_damaging(0.704) TCGA-BR-8078-01 1 1262942 1262942 C A GLTPD1 Silent p.A148A 0.19 TCGA-BR-8078-01 1 1326219 1326219 G A CCNL2 Missense_Mutation p.T229I 0.25 deleterious(0) probably_damaging(0.999) TCGA-BR-8078-01 1 13719051 13719051 G T PRAMEF17 3'UTR 0.38 TCGA-BR-8078-01 1 14108436 14108436 C T PRDM2 Silent p.G1382G 0.27 TCGA-BR-8078-01 1 149916627 149916627 T - OTUD7B Frame_Shift_Del p.N554Tfs*3 0.23 TCGA-BR-8078-01 1 150526141 150526141 C - ADAMTSL4 Frame_Shift_Del p.Q227Kfs*5 0.27 TCGA-BR-8078-01 1 150529726 150529726 G A ADAMTSL4 Silent p.P654P 0.35 TCGA-BR-8078-01 1 150923259 150923259 C T SETDB1 Missense_Mutation p.R636W 0.25 deleterious(0) probably_damaging(1) TCGA-BR-8078-01 1 150931769 150931769 G T SETDB1 Missense_Mutation p.G816C 0.32 deleterious(0) probably_damaging(1) TCGA-BR-8078-01 1 151280093 151280093 C T PI4KB Missense_Mutation p.R392H 0.32 deleterious(0) probably_damaging(0.983) TCGA-BR-8078-01 1 151314788 151314789 - T RFX5 Frame_Shift_Ins p.E576Gfs*17 0.26 TCGA-BR-8078-01 1 151317583 151317583 T - RFX5 Frame_Shift_Del p.S78Afs*7 0.33 TCGA-BR-8078-01 1 151994945 151994945 G A NBPF18P RNA 0.20 TCGA-BR-8078-01 1 152083177 152083177 T C TCHH Missense_Mutation p.Q839R 0.25 unknown(0) TCGA-BR-8078-01 1 152190973 152190973 G A HRNR Silent p.S1044S 0.29 TCGA-BR-8078-01 1 152280785 152280785 T - FLG Frame_Shift_Del p.T2193Hfs*226 0.27 TCGA-BR-8078-01 1 152975733 152975733 G A SPRR3 Silent p.E79E 0.28 TCGA-BR-8078-01 1 154247469 154247469 A G HAX1 Missense_Mutation p.E183G 0.29 deleterious(0.02) probably_damaging(0.923) TCGA-BR-8078-01 1 155491087 155491087 A G ASH1L Missense_Mutation p.V75A 0.29 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-BR-8078-01 1 155722995 155722995 C A GON4L Nonsense_Mutation p.G1948* 0.39 TCGA-BR-8078-01 1 156106015 156106016 - C LMNA Frame_Shift_Ins p.S392Qfs*34 0.25 TCGA-BR-8078-01 1 156645010 156645010 G A NES Silent p.Y302Y 0.22 TCGA-BR-8078-01 1 157557085 157557085 C T FCRL4 Silent p.S276S 0.29 TCGA-BR-8078-01 1 157666960 157666960 T - FCRL3 Frame_Shift_Del p.R272Gfs*3 0.22 TCGA-BR-8078-01 1 158450149 158450149 G A OR10R2 Missense_Mutation p.C161Y 0.31 deleterious(0) probably_damaging(0.997) TCGA-BR-8078-01 1 158687866 158687866 A T OR6K3 Missense_Mutation p.F14I 0.34 tolerated(0.29) possibly_damaging(0.841) TCGA-BR-8078-01 1 158746767 158746768 - T OR6N2 Frame_Shift_Ins p.R220Kfs*52 0.21 TCGA-BR-8078-01 1 158914700 158914700 C T PYHIN1 Silent p.S409S 0.28 TCGA-BR-8078-01 1 159163282 159163282 A G CADM3 Missense_Mutation p.N185S 0.13 tolerated(0.2) benign(0.002) TCGA-BR-8078-01 1 160209863 160209863 C T DCAF8 Missense_Mutation p.R116H 0.21 tolerated(0.54) benign(0.002) TCGA-BR-8078-01 1 16060293 16060293 T C PLEKHM2 Missense_Mutation p.V975A 0.21 tolerated(0.1) benign(0.4) TCGA-BR-8078-01 1 161018410 161018410 C A ARHGAP30 Nonsense_Mutation p.G801* 0.28 TCGA-BR-8078-01 1 161196288 161196288 C T TOMM40L Silent p.N3N 0.27 TCGA-BR-8078-01 1 161495033 161495033 C T HSPA6 Silent p.R195R 0.12 TCGA-BR-8078-01 1 163313613 163313613 T C NUF2 Missense_Mutation p.Y254H 0.27 tolerated(0.47) possibly_damaging(0.851) TCGA-BR-8078-01 1 16344393 16344393 G A HSPB7 Silent p.S22S 0.30 TCGA-BR-8078-01 1 16378753 16378753 A G CLCNKB Missense_Mutation p.E490G 0.35 deleterious(0) probably_damaging(1) TCGA-BR-8078-01 1 16464408 16464408 C T EPHA2 Missense_Mutation p.V418I 0.29 deleterious(0.02) benign(0.016) TCGA-BR-8078-01 1 167962538 167962538 A C DCAF6 Silent p.R255R 0.26 TCGA-BR-8078-01 1 169586506 169586506 T C SELP Missense_Mutation p.K81E 0.30 tolerated(0.85) benign(0) TCGA-BR-8078-01 1 17023338 17023338 T G ESPNP RNA 0.11 TCGA-BR-8078-01 1 171300894 171300894 T G FMO4 Silent p.A200A 0.31 TCGA-BR-8078-01 1 171504603 171504603 G A PRRC2C Missense_Mutation p.R635H 0.29 unknown(0) TCGA-BR-8078-01 1 171560757 171560757 C T PRRC2C Missense_Mutation p.T2742M 0.37 probably_damaging(0.976) TCGA-BR-8078-01 1 17313685 17313685 C T ATP13A2 Missense_Mutation p.R980H 0.11 tolerated(0.09) benign(0.046) TCGA-BR-8078-01 1 174418046 174418046 T G GPR52 Missense_Mutation p.V266G 0.27 deleterious(0.03) benign(0.012) TCGA-BR-8078-01 1 176659716 176659716 T - PAPPA2 Intron 0.36 TCGA-BR-8078-01 1 17721598 17721598 A - PADI6 RNA 0.26 TCGA-BR-8078-01 1 179600006 179600006 A G TDRD5 Silent p.G359G 0.30 TCGA-BR-8078-01 1 180155204 180155204 G T QSOX1 Missense_Mutation p.A302S 0.20 tolerated(0.06) probably_damaging(0.909) TCGA-BR-8078-01 1 180914727 180914727 C T KIAA1614 3'UTR 0.28 TCGA-BR-8078-01 1 183109589 183109590 CT - LAMC1 Frame_Shift_Del p.S1509Cfs*3 0.30 TCGA-BR-8078-01 1 183938468 183938468 G - COLGALT2 Frame_Shift_Del p.P256Hfs*41 0.22 TCGA-BR-8078-01 1 185130053 185130053 A - SWT1 Frame_Shift_Del p.D29Tfs*17 0.15 TCGA-BR-8078-01 1 186107063 186107063 A G HMCN1 Missense_Mutation p.N4628S 0.39 benign(0) TCGA-BR-8078-01 1 186908212 186908213 - A PLA2G4A Frame_Shift_Ins p.N258Kfs*3 0.22 TCGA-BR-8078-01 1 190067112 190067112 T A BRINP3 3'UTR 0.27 TCGA-BR-8078-01 1 197147552 197147552 C T ZBTB41 Silent p.S589S 0.31 TCGA-BR-8078-01 1 197704823 197704823 C T DENND1B Intron 0.30 TCGA-BR-8078-01 1 198608465 198608465 G A PTPRC Missense_Mutation p.V23M 0.38 deleterious_low_confidence(0.01) benign(0.351) TCGA-BR-8078-01 1 20020975 20020975 G A TMCO4 Silent p.P484P 0.29 TCGA-BR-8078-01 1 201185742 201185742 C T IGFN1 Silent p.G3152G 0.11 TCGA-BR-8078-01 1 201816700 201816700 A C IPO9 Missense_Mutation p.K82N 0.32 deleterious(0) probably_damaging(0.998) TCGA-BR-8078-01 1 202104870 202104870 T C ARL8A Missense_Mutation p.N113D 0.39 tolerated(0.64) benign(0.088) TCGA-BR-8078-01 1 202126901 202126901 G A PTPN7 Silent p.H224H 0.45 TCGA-BR-8078-01 1 202287836 202287836 C A LGR6 Missense_Mutation p.P802H 0.34 tolerated(0.54) probably_damaging(0.951) TCGA-BR-8078-01 1 202715099 202715099 G A KDM5B Missense_Mutation p.T737M 0.30 deleterious(0) probably_damaging(0.992) TCGA-BR-8078-01 1 203054840 203054840 G A MYOG Missense_Mutation p.R84W 0.27 deleterious(0) probably_damaging(0.993) TCGA-BR-8078-01 1 203467905 203467905 C T OPTC Missense_Mutation p.A156V 0.36 deleterious(0.04) benign(0.378) TCGA-BR-8078-01 1 204438319 204438319 C T PIK3C2B Silent p.E204E 0.32 TCGA-BR-8078-01 1 204587829 204587829 G - LRRN2 Frame_Shift_Del p.P431Qfs*5 0.38 TCGA-BR-8078-01 1 204924033 204924033 C - NFASC Frame_Shift_Del p.P165Rfs*12 0.45 TCGA-BR-8078-01 1 205126463 205126463 C T DSTYK Missense_Mutation p.G764R 0.32 deleterious(0) probably_damaging(1) TCGA-BR-8078-01 1 205312759 205312759 C T KLHDC8A 5'UTR 0.43 TCGA-BR-8078-01 1 205495262 205495262 C T CDK18 Missense_Mutation p.R206W 0.13 deleterious(0) probably_damaging(1) TCGA-BR-8078-01 1 205892468 205892468 C T SLC26A9 Missense_Mutation p.A552T 0.26 tolerated(0.28) possibly_damaging(0.523) TCGA-BR-8078-01 1 206239306 206239306 A - C1orf186 3'UTR 0.35 TCGA-BR-8078-01 1 207500173 207500173 G A CD55 Missense_Mutation p.E219K 0.32 tolerated(0.2) probably_damaging(0.978) TCGA-BR-8078-01 1 207679429 207679429 G A CR1 Splice_Site p.X101_splice 0.28 TCGA-BR-8078-01 1 209955413 209955413 C T TRAF3IP3 Nonsense_Mutation p.R526* 0.22 TCGA-BR-8078-01 1 209961990 209961990 C A IRF6 Splice_Site p.X394_splice 0.29 TCGA-BR-8078-01 1 21226331 21226332 - T EIF4G3 Frame_Shift_Ins p.V570Sfs*12 0.21 TCGA-BR-8078-01 1 212548597 212548597 T - TMEM206 Frame_Shift_Del p.S338Vfs*22 0.21 TCGA-BR-8078-01 1 216462723 216462723 A G USH2A Missense_Mutation p.F624L 0.34 benign(0.12) TCGA-BR-8078-01 1 22178631 22178631 C T HSPG2 Missense_Mutation p.A2274T 0.28 benign(0.041) TCGA-BR-8078-01 1 221879607 221879607 T C DUSP10 Missense_Mutation p.Q338R 0.28 tolerated(0.29) benign(0.252) TCGA-BR-8078-01 1 22338988 22338988 C T CELA3A 3'UTR 0.25 TCGA-BR-8078-01 1 225707022 225707022 T C ENAH Missense_Mutation p.Q227R 0.26 tolerated_low_confidence(1) unknown(0) TCGA-BR-8078-01 1 226925196 226925196 C T ITPKB 5'UTR 0.27 TCGA-BR-8078-01 1 228111953 228111954 - C WNT9A Frame_Shift_Ins p.C168Lfs*6 0.27 TCGA-BR-8078-01 1 228538616 228538616 A G OBSCN Missense_Mutation p.I7088V 0.32 benign(0.086) TCGA-BR-8078-01 1 228556588 228556588 G A OBSCN Missense_Mutation p.D7602N 0.34 probably_damaging(0.992) TCGA-BR-8078-01 1 22987549 22987549 C T C1QB Silent p.H144H 0.31 TCGA-BR-8078-01 1 231061267 231061267 G A TTC13 Silent p.H528H 0.34 TCGA-BR-8078-01 1 231362504 231362504 T G C1orf131 Missense_Mutation p.K225T 0.27 deleterious(0.04) possibly_damaging(0.549) TCGA-BR-8078-01 1 23234598 23234598 G A EPHB2 Silent p.S764S 0.29 TCGA-BR-8078-01 1 232539885 232539885 T C SIPA1L2 Missense_Mutation p.H1601R 0.15 tolerated(0.42) benign(0.243) TCGA-BR-8078-01 1 232574927 232574927 C T SIPA1L2 Missense_Mutation p.A1320T 0.23 tolerated(0.26) benign(0.002) TCGA-BR-8078-01 1 23382484 23382484 C A KDM1A Silent p.R315R 0.28 TCGA-BR-8078-01 1 235594095 235594095 T G TBCE Missense_Mutation p.N212K 0.32 deleterious(0.01) possibly_damaging(0.721) TCGA-BR-8078-01 1 235897964 235897964 A - LYST Intron 0.25 TCGA-BR-8078-01 1 236744679 236744679 G A HEATR1 Silent p.F866F 0.29 TCGA-BR-8078-01 1 237024474 237024475 AA - MTR Frame_Shift_Del p.K700Ifs*9 0.30 TCGA-BR-8078-01 1 23845545 23845545 G T E2F2 Missense_Mutation p.P272H 0.29 deleterious(0) probably_damaging(0.922) TCGA-BR-8078-01 1 241712984 241712984 A T KMO Silent p.R44R 0.19 TCGA-BR-8078-01 1 247902304 247902305 TG - OR14K1 Frame_Shift_Del p.C130* 0.26 TCGA-BR-8078-01 1 248309019 248309019 T C OR2M5 Silent p.N190N 0.29 TCGA-BR-8078-01 1 248436928 248436928 T A OR2T33 Missense_Mutation p.Q63H 0.27 tolerated(0.08) benign(0.111) TCGA-BR-8078-01 1 248790195 248790195 G T OR2T11 Missense_Mutation p.L79M 0.36 deleterious(0.01) probably_damaging(0.992) TCGA-BR-8078-01 1 249142338 249142338 G A ZNF672 Missense_Mutation p.G289S 0.27 tolerated(0.09) probably_damaging(0.946) TCGA-BR-8078-01 1 249151439 249151439 G A ZNF692 Missense_Mutation p.L162F 0.32 tolerated(0.19) benign(0.17) TCGA-BR-8078-01 1 25785019 25785019 A - TMEM57 Frame_Shift_Del p.K265Nfs*6 0.29 TCGA-BR-8078-01 1 26073179 26073179 G A MAN1C1 Missense_Mutation p.V220I 0.27 tolerated(1) benign(0.002) TCGA-BR-8078-01 1 26162205 26162205 G T AUNIP Missense_Mutation p.P118H 0.29 deleterious(0) probably_damaging(0.979) TCGA-BR-8078-01 1 26370880 26370880 A G SLC30A2 Silent p.T109T 0.23 TCGA-BR-8078-01 1 26385070 26385070 G A TRIM63 Silent p.D214D 0.30 TCGA-BR-8078-01 1 26689609 26689609 G T ZNF683 Missense_Mutation p.Q351K 0.27 tolerated(0.21) possibly_damaging(0.646) TCGA-BR-8078-01 1 27101268 27101268 C - ARID1A Frame_Shift_Del p.Q1519Rfs*8 0.29 TCGA-BR-8078-01 1 27124087 27124087 A G PIGV Missense_Mutation p.I412V 0.26 tolerated(1) benign(0.006) TCGA-BR-8078-01 1 27238201 27238201 G T NR0B2 3'UTR 0.42 TCGA-BR-8078-01 1 27278207 27278207 G A C1orf172 Missense_Mutation p.S222L 0.39 tolerated(0.17) probably_damaging(0.937) TCGA-BR-8078-01 1 27630202 27630202 G A WDTC1 Missense_Mutation p.R519Q 0.34 deleterious(0.03) possibly_damaging(0.901) TCGA-BR-8078-01 1 28271805 28271805 T C SMPDL3B Missense_Mutation p.F42L 0.36 tolerated(0.45) benign(0.002) TCGA-BR-8078-01 1 29609223 29609223 G A PTPRU Missense_Mutation p.R635Q 0.33 tolerated(0.62) possibly_damaging(0.477) TCGA-BR-8078-01 1 29609286 29609286 C T PTPRU Missense_Mutation p.A656V 0.30 deleterious(0.02) possibly_damaging(0.604) TCGA-BR-8078-01 1 32205105 32205105 T G BAI2 Missense_Mutation p.S767R 0.43 deleterious(0) probably_damaging(0.947) TCGA-BR-8078-01 1 32207266 32207266 G A BAI2 Missense_Mutation p.A549V 0.33 deleterious(0) probably_damaging(0.969) TCGA-BR-8078-01 1 32672208 32672208 G T IQCC Missense_Mutation p.E175D 0.30 tolerated(0.22) possibly_damaging(0.763) TCGA-BR-8078-01 1 33330280 33330280 C - FNDC5 Frame_Shift_Del p.L132Ffs*69 0.23 TCGA-BR-8078-01 1 33745827 33745827 C G ZNF362 Missense_Mutation p.T151S 0.16 tolerated(0.97) benign(0.002) TCGA-BR-8078-01 1 33773018 33773018 C T A3GALT2 Silent p.T124T 0.22 TCGA-BR-8078-01 1 33985139 33985139 G A CSMD2 Silent p.S3481S 0.29 TCGA-BR-8078-01 1 34117960 34117960 C T CSMD2 Missense_Mutation p.V1477I 0.32 deleterious(0) probably_damaging(0.984) TCGA-BR-8078-01 1 3418429 3418429 C - MEGF6 Frame_Shift_Del p.A749Pfs*223 0.35 TCGA-BR-8078-01 1 34204792 34204792 C T CSMD2 Missense_Mutation p.V733I 0.35 tolerated(1) benign(0.005) TCGA-BR-8078-01 1 35227553 35227553 C T GJB4 Missense_Mutation p.T233M 0.29 deleterious(0.04) benign(0.326) TCGA-BR-8078-01 1 35365852 35365852 C - DLGAP3 Frame_Shift_Del p.G377Vfs*91 0.26 TCGA-BR-8078-01 1 36060354 36060354 G T TFAP2E 3'UTR 0.39 TCGA-BR-8078-01 1 36938264 36938264 G A CSF3R Missense_Mutation p.R233W 0.52 tolerated(0.15) benign(0.003) TCGA-BR-8078-01 1 39877867 39877867 G A KIAA0754 Missense_Mutation p.E508K 0.28 benign(0.01) TCGA-BR-8078-01 1 40219004 40219004 G A PPIE Intron 0.30 TCGA-BR-8078-01 1 40235958 40235958 G - OXCT2 Frame_Shift_Del p.L324Cfs*11 0.13 TCGA-BR-8078-01 1 40307167 40307167 A - TRIT1 3'UTR 0.48 TCGA-BR-8078-01 1 40928171 40928171 T C ZFP69B Missense_Mutation p.M172T 0.30 tolerated(0.17) benign(0.042) TCGA-BR-8078-01 1 42925658 42925658 A - PPCS 3'UTR 0.65 TCGA-BR-8078-01 1 43805156 43805156 A G MPL Silent p.S202S 0.28 TCGA-BR-8078-01 1 43905354 43905354 C T SZT2 Missense_Mutation p.P2262L 0.33 tolerated(0.44) benign(0.002) TCGA-BR-8078-01 1 43916351 43916351 G A SZT2 3'UTR 0.17 TCGA-BR-8078-01 1 44437851 44437851 T C DPH2 Missense_Mutation p.L397P 0.25 deleterious(0.01) possibly_damaging(0.781) TCGA-BR-8078-01 1 44489952 44489952 C T SLC6A9 5'UTR 0.33 TCGA-BR-8078-01 1 45810847 45810847 G T TESK2 Missense_Mutation p.P461T 0.37 deleterious(0) possibly_damaging(0.901) TCGA-BR-8078-01 1 45851582 45851582 A G TESK2 Splice_Site p.X131_splice 0.46 TCGA-BR-8078-01 1 45965963 45965963 T C MMACHC 5'UTR 0.26 TCGA-BR-8078-01 1 46120889 46120890 - A GPBP1L1 Frame_Shift_Ins p.N55* 0.26 TCGA-BR-8078-01 1 46124812 46124812 G T GPBP1L1 Intron 0.32 TCGA-BR-8078-01 1 46597671 46597671 T - PIK3R3 5'UTR 0.21 TCGA-BR-8078-01 1 46659402 46659402 T C POMGNT1 Intron 0.31 TCGA-BR-8078-01 1 4829992 4829992 A - AJAP1 Frame_Shift_Del p.N305Ifs*132 0.30 TCGA-BR-8078-01 1 48698101 48698101 G - SLC5A9 Frame_Shift_Del p.G347Afs*3 0.17 TCGA-BR-8078-01 1 51760082 51760082 G A TTC39A Missense_Mutation p.S420L 0.13 tolerated(0.12) benign(0.157) TCGA-BR-8078-01 1 52279744 52279744 C T NRD1 Missense_Mutation p.R614Q 0.16 tolerated(1) benign(0.004) TCGA-BR-8078-01 1 52839017 52839017 T G ORC1 Missense_Mutation p.M808L 0.20 tolerated(0.24) benign(0.017) TCGA-BR-8078-01 1 52849592 52849592 T - ORC1 Frame_Shift_Del p.A592Qfs*41 0.20 TCGA-BR-8078-01 1 52874256 52874256 G - PRPF38A Frame_Shift_Del p.A104Hfs*4 0.21 TCGA-BR-8078-01 1 53930372 53930372 G A DMRTB1 Silent p.L271L 0.27 TCGA-BR-8078-01 1 53986414 53986414 G A GLIS1 Missense_Mutation p.A365V 0.44 tolerated(0.1) benign(0.171) TCGA-BR-8078-01 1 54060232 54060232 C - GLIS1 Frame_Shift_Del p.G115Afs*31 0.33 TCGA-BR-8078-01 1 62330097 62330097 A T INADL Missense_Mutation p.Y876F 0.34 tolerated(0.12) benign(0.049) TCGA-BR-8078-01 1 62330117 62330117 T G INADL Missense_Mutation p.S883A 0.35 tolerated(0.53) benign(0.012) TCGA-BR-8078-01 1 64022887 64022887 A C EFCAB7 Missense_Mutation p.K439N 0.28 tolerated(0.1) benign(0.06) TCGA-BR-8078-01 1 6419004 6419004 C T ACOT7 Intron 0.50 TCGA-BR-8078-01 1 6504723 6504723 G T ESPN Missense_Mutation p.K391N 0.27 deleterious(0.04) possibly_damaging(0.834) TCGA-BR-8078-01 1 68171151 68171151 T - GNG12 Frame_Shift_Del p.T68Lfs*22 0.57 TCGA-BR-8078-01 1 74492637 74492637 T C LRRIQ3 Missense_Mutation p.K579E 0.19 tolerated(0.16) benign(0.051) TCGA-BR-8078-01 1 75038908 75038908 C T C1orf173 Missense_Mutation p.R829K 0.13 tolerated(0.06) benign(0.203) TCGA-BR-8078-01 1 75078435 75078436 - A C1orf173 Frame_Shift_Ins p.L354Pfs*14 0.26 TCGA-BR-8078-01 1 75688134 75688134 A G SLC44A5 Missense_Mutation p.C333R 0.38 deleterious(0.01) possibly_damaging(0.652) TCGA-BR-8078-01 1 7724488 7724488 C T CAMTA1 Silent p.V627V 0.29 TCGA-BR-8078-01 1 7811260 7811260 A G CAMTA1 Missense_Mutation p.Y1564C 0.26 deleterious(0) probably_damaging(0.998) TCGA-BR-8078-01 1 78433854 78433854 T - FUBP1 Frame_Shift_Del p.N82Mfs*19 0.22 TCGA-BR-8078-01 1 84335733 84335735 AAG - TTLL7 In_Frame_Del p.F858del 0.32 TCGA-BR-8078-01 1 84701110 84701110 A T PRKACB 3'UTR 0.32 TCGA-BR-8078-01 1 87538643 87538643 C T HS2ST1 Nonsense_Mutation p.R51* 0.30 TCGA-BR-8078-01 1 9165734 9165734 C T GPR157 Silent p.T201T 0.50 TCGA-BR-8078-01 1 92442712 92442712 C A BRDT Missense_Mutation p.P244H 0.22 tolerated(0.37) possibly_damaging(0.87) TCGA-BR-8078-01 1 93580631 93580632 - CAA MTF2 In_Frame_Ins p.T160dup 0.25 TCGA-BR-8078-01 1 93602324 93602324 C T MTF2 Missense_Mutation p.L508F 0.33 tolerated(0.58) benign(0.189) TCGA-BR-8078-01 1 94018104 94018104 T - FNBP1L 3'UTR 0.36 TCGA-BR-8078-01 1 94054660 94054660 G A BCAR3 Missense_Mutation p.T268I 0.31 tolerated(0.14) benign(0.004) TCGA-BR-8078-01 1 94639400 94639400 A - ARHGAP29 3'UTR 0.20 TCGA-BR-8078-01 1 9775947 9775947 C T PIK3CD Silent p.N137N 0.17 TCGA-BR-8078-01 1 99767288 99767288 C A LPPR4 Missense_Mutation p.F267L 0.30 tolerated(0.07) possibly_damaging(0.832) TCGA-BR-8078-01 20 10626634 10626634 C - JAG1 Frame_Shift_Del p.A662Pfs*81 0.27 TCGA-BR-8078-01 20 10653395 10653395 C T JAG1 Missense_Mutation p.G114D 0.12 tolerated(0.78) benign(0.034) TCGA-BR-8078-01 20 13029789 13029789 G A SPTLC3 Intron 0.08 TCGA-BR-8078-01 20 13763492 13763492 T - ESF1 Frame_Shift_Del p.T99Pfs*12 0.30 TCGA-BR-8078-01 20 13797842 13797842 A - NDUFAF5 Frame_Shift_Del p.K343Nfs*30 0.12 TCGA-BR-8078-01 20 1424325 1424325 C T NSFL1C 3'UTR 0.29 TCGA-BR-8078-01 20 14665540 14665540 G A MACROD2 Missense_Mutation p.R118H 0.30 tolerated(0.09) probably_damaging(0.993) TCGA-BR-8078-01 20 16488710 16488710 C T KIF16B Missense_Mutation p.V198I 0.21 tolerated(0.22) benign(0.323) TCGA-BR-8078-01 20 17479597 17479597 C T BFSP1 Missense_Mutation p.R275H 0.27 deleterious(0) probably_damaging(0.948) TCGA-BR-8078-01 20 17601408 17601410 CTC - RRBP1 In_Frame_Del p.E720del 0.22 TCGA-BR-8078-01 20 17943463 17943463 T C SNX5 Intron 0.37 TCGA-BR-8078-01 20 18523027 18523027 G A SEC23B Missense_Mutation p.V498M 0.38 deleterious(0) probably_damaging(0.999) TCGA-BR-8078-01 20 22564969 22564969 C A FOXA2 5'UTR 0.54 TCGA-BR-8078-01 20 2443740 2443740 G - SNRPB Frame_Shift_Del p.P185Lfs*4 0.24 TCGA-BR-8078-01 20 25038592 25038592 T A ACSS1 Silent p.A49A 0.35 TCGA-BR-8078-01 20 2843946 2843946 C T VPS16 Missense_Mutation p.R460W 0.26 deleterious(0) probably_damaging(1) TCGA-BR-8078-01 20 30070226 30070226 A G REM1 Missense_Mutation p.H187R 0.32 tolerated(0.08) benign(0.05) TCGA-BR-8078-01 20 30602874 30602874 G T CCM2L Missense_Mutation p.K66N 0.28 deleterious(0) probably_damaging(0.999) TCGA-BR-8078-01 20 3215452 3215452 G A SLC4A11 Silent p.I102I 0.21 TCGA-BR-8078-01 20 33346694 33346694 G - NCOA6 Frame_Shift_Del p.P186Rfs*9 0.22 TCGA-BR-8078-01 20 334250 334250 C T NRSN2 Nonsense_Mutation p.Q196* 0.32 TCGA-BR-8078-01 20 3354734 3354734 C A C20orf194 Missense_Mutation p.E191D 0.30 tolerated(0.07) benign(0.129) TCGA-BR-8078-01 20 34025552 34025552 G - GDF5 Frame_Shift_Del p.L53Wfs*34 0.38 TCGA-BR-8078-01 20 34205465 34205465 G A SPAG4 Missense_Mutation p.V145M 0.47 tolerated(0.09) benign(0.068) TCGA-BR-8078-01 20 34505541 34505541 G A PHF20 Missense_Mutation p.R654H 0.32 deleterious(0) probably_damaging(1) TCGA-BR-8078-01 20 35060080 35060080 C T DLGAP4 5'UTR 0.43 TCGA-BR-8078-01 20 35444513 35444513 G A SOGA1 Silent p.T444T 0.33 TCGA-BR-8078-01 20 35635937 35635937 A G RBL1 Silent p.P916P 0.45 TCGA-BR-8078-01 20 36640587 36640587 T - TTI1 Frame_Shift_Del p.K544Nfs*10 0.27 TCGA-BR-8078-01 20 36718282 36718282 G T RPRD1B 3'UTR 0.28 TCGA-BR-8078-01 20 3673238 3673238 G A SIGLEC1 Silent p.G1320G 0.22 TCGA-BR-8078-01 20 3684491 3684491 G - SIGLEC1 Frame_Shift_Del p.I319Sfs*12 0.26 TCGA-BR-8078-01 20 3719363 3719363 C T HSPA12B Silent p.I14I 0.27 TCGA-BR-8078-01 20 39316588 39316588 G A MAFB Silent p.L301L 0.32 TCGA-BR-8078-01 20 39750659 39750661 AAG - TOP1 In_Frame_Del p.K689del 0.28 TCGA-BR-8078-01 20 44472965 44472965 G - ACOT8 Frame_Shift_Del p.L195* 0.36 TCGA-BR-8078-01 20 45000493 45000493 C T ELMO2 Missense_Mutation p.R511H 0.11 deleterious(0.03) probably_damaging(0.962) TCGA-BR-8078-01 20 49218795 49218795 G A FAM65C Silent p.S487S 0.27 TCGA-BR-8078-01 20 49626482 49626482 G A KCNG1 Missense_Mutation p.R132C 0.38 deleterious(0.04) probably_damaging(0.939) TCGA-BR-8078-01 20 50701514 50701514 G A ZFP64 Missense_Mutation p.A507V 0.10 deleterious(0.04) benign(0.033) TCGA-BR-8078-01 20 5282772 5282772 G A PROKR2 Missense_Mutation p.R357W 0.29 tolerated(0.14) benign(0.088) TCGA-BR-8078-01 20 55012586 55012586 G A CASS4 Missense_Mutation p.D135N 0.33 tolerated(0.14) benign(0.034) TCGA-BR-8078-01 20 55948793 55948793 C T RAE1 Missense_Mutation p.A275V 0.06 deleterious(0.04) benign(0.335) TCGA-BR-8078-01 20 56099047 56099047 G A CTCFL Missense_Mutation p.S72L 0.33 tolerated(0.07) benign(0.004) TCGA-BR-8078-01 20 56138664 56138664 C T PCK1 Missense_Mutation p.A281V 0.24 deleterious(0.03) benign(0.234) TCGA-BR-8078-01 20 57766302 57766302 G A ZNF831 Silent p.P76P 0.40 TCGA-BR-8078-01 20 6091015 6091015 G - FERMT1 Frame_Shift_Del p.Q226Sfs*26 0.27 TCGA-BR-8078-01 20 61444236 61444236 C T OGFR Silent p.S423S 0.24 TCGA-BR-8078-01 20 61637536 61637536 C T BHLHE23 Silent p.A181A 0.38 TCGA-BR-8078-01 20 62326158 62326158 C T RTEL1 Silent p.H1082H 0.42 TCGA-BR-8078-01 20 62904614 62904614 C T PCMTD2 Silent p.I249I 0.35 TCGA-BR-8078-01 20 746209 746209 G A SLC52A3 Silent p.S70S 0.67 TCGA-BR-8078-01 21 19713805 19713805 G T TMPRSS15 Missense_Mutation p.L497I 0.31 deleterious(0.04) probably_damaging(0.951) TCGA-BR-8078-01 21 22804468 22804468 G A NCAM2 Silent p.L507L 0.35 TCGA-BR-8078-01 21 22804561 22804561 G A NCAM2 Silent p.A538A 0.17 TCGA-BR-8078-01 21 28296840 28296840 T C ADAMTS5 Silent p.L775L 0.28 TCGA-BR-8078-01 21 28327159 28327159 A G ADAMTS5 Missense_Mutation p.L379P 0.23 deleterious(0) probably_damaging(1) TCGA-BR-8078-01 21 30302779 30302779 C T LTN1 Silent p.T1810T 0.31 TCGA-BR-8078-01 21 30341860 30341860 A - LTN1 Frame_Shift_Del p.F459Lfs*7 0.29 TCGA-BR-8078-01 21 31538698 31538698 C A CLDN17 Missense_Mutation p.A80S 0.39 tolerated(0.63) benign(0.079) TCGA-BR-8078-01 21 33068880 33068880 A G SCAF4 Splice_Site p.X320_splice 0.09 TCGA-BR-8078-01 21 39580515 39580515 A G DSCR10 RNA 0.26 TCGA-BR-8078-01 21 44182195 44182195 A G PDE9A Missense_Mutation p.Y363C 0.37 deleterious(0) probably_damaging(1) TCGA-BR-8078-01 21 44438315 44438315 G A PKNOX1 Missense_Mutation p.G232E 0.37 deleterious(0.03) possibly_damaging(0.763) TCGA-BR-8078-01 21 46086770 46086770 G A KRTAP12-2 Missense_Mutation p.P12S 0.30 tolerated(0.06) unknown(0) TCGA-BR-8078-01 21 46705828 46705828 G A POFUT2 Silent p.D49D 0.35 TCGA-BR-8078-01 21 47831338 47831338 G A PCNT Missense_Mutation p.R1784H 0.25 benign(0) TCGA-BR-8078-01 22 16256520 16256520 T - POTEH 3'UTR 0.11 TCGA-BR-8078-01 22 17265053 17265053 G T XKR3 Missense_Mutation p.P279Q 0.24 deleterious(0) probably_damaging(0.991) TCGA-BR-8078-01 22 17600895 17600895 C T CECR6 Missense_Mutation p.A375T 0.31 tolerated(0.21) benign(0.061) TCGA-BR-8078-01 22 18566233 18566233 T C PEX26 Silent p.P134P 0.29 TCGA-BR-8078-01 22 19776447 19776447 C T GNB1L Missense_Mutation p.A257T 0.31 deleterious(0.02) benign(0.426) TCGA-BR-8078-01 22 20073923 20073923 C T DGCR8 Missense_Mutation p.A146V 0.27 tolerated_low_confidence(0.07) benign(0.124) TCGA-BR-8078-01 22 20130522 20130522 C - ZDHHC8 Frame_Shift_Del p.T459Rfs*177 0.22 TCGA-BR-8078-01 22 20918929 20918929 A T MED15 Missense_Mutation p.Q215L 0.38 tolerated_low_confidence(0.78) unknown(0) TCGA-BR-8078-01 22 20918930 20918930 G C MED15 Missense_Mutation p.Q215H 0.37 tolerated_low_confidence(0.54) unknown(0) TCGA-BR-8078-01 22 21346541 21346541 C T LZTR1 Silent p.S344S 0.22 TCGA-BR-8078-01 22 21800988 21800988 C T HIC2 Missense_Mutation p.R602C 0.31 deleterious(0) possibly_damaging(0.876) TCGA-BR-8078-01 22 22064942 22064942 G A YPEL1 Missense_Mutation p.A31V 0.35 deleterious(0) probably_damaging(0.964) TCGA-BR-8078-01 22 22869135 22869135 C T ZNF280A Missense_Mutation p.V274M 0.27 tolerated(1) benign(0.008) TCGA-BR-8078-01 22 23438488 23438488 G - GNAZ Frame_Shift_Del p.Q205Rfs*29 0.28 TCGA-BR-8078-01 22 24717353 24717354 - A SPECC1L Frame_Shift_Ins p.L138Tfs*9 0.24 TCGA-BR-8078-01 22 24898311 24898311 G A UPB1 Intron 0.22 TCGA-BR-8078-01 22 29445999 29445999 G - ZNRF3 Frame_Shift_Del p.G612Afs*54 0.28 TCGA-BR-8078-01 22 29449693 29449693 T - ZNRF3 3'UTR 0.22 TCGA-BR-8078-01 22 29707029 29707029 G - GAS2L1 3'UTR 0.31 TCGA-BR-8078-01 22 29727444 29727444 T C AP1B1 Missense_Mutation p.K840E 0.30 tolerated(0.31) benign(0.002) TCGA-BR-8078-01 22 29835329 29835329 A - RFPL1 Intron 0.41 TCGA-BR-8078-01 22 30691731 30691731 G C TBC1D10A Silent p.G180G 0.41 TCGA-BR-8078-01 22 32242937 32242937 A G DEPDC5 Missense_Mutation p.M1038V 0.23 deleterious(0.02) benign(0.04) TCGA-BR-8078-01 22 36681986 36681986 G A MYH9 Missense_Mutation p.A1692V 0.17 possibly_damaging(0.798) TCGA-BR-8078-01 22 37329915 37329915 C T CSF2RB Silent p.A398A 0.38 TCGA-BR-8078-01 22 37602620 37602621 - C SSTR3 Frame_Shift_Ins p.E408Gfs*42 0.19 TCGA-BR-8078-01 22 37966414 37966415 TG - LGALS2 Frame_Shift_Del p.T85Sfs*4 0.29 TCGA-BR-8078-01 22 38154108 38154108 G T TRIOBP Missense_Mutation p.G2059V 0.56 deleterious(0.01) probably_damaging(0.987) TCGA-BR-8078-01 22 38208895 38208895 G A GCAT Missense_Mutation p.S136N 0.29 tolerated(0.07) benign(0.029) TCGA-BR-8078-01 22 38323740 38323740 C A MICALL1 Silent p.P596P 0.26 TCGA-BR-8078-01 22 39222642 39222642 C T NPTXR Missense_Mutation p.A321T 0.28 tolerated(0.07) benign(0.007) TCGA-BR-8078-01 22 39427960 39427960 A G APOBEC3D Missense_Mutation p.K342E 0.13 tolerated(0.38) benign(0.002) TCGA-BR-8078-01 22 39639986 39639986 C G PDGFB 5'UTR 0.21 TCGA-BR-8078-01 22 39817856 39817856 C T TAB1 Silent p.I267I 0.36 TCGA-BR-8078-01 22 40056439 40056439 G A CACNA1I Missense_Mutation p.G899R 0.33 tolerated(0.07) probably_damaging(0.956) TCGA-BR-8078-01 22 41257619 41257619 T C DNAJB7 Missense_Mutation p.Y127C 0.24 tolerated(0.17) benign(0.002) TCGA-BR-8078-01 22 41923885 41923885 G A POLR3H 3'UTR 0.21 TCGA-BR-8078-01 22 43089138 43089138 G A A4GALT Missense_Mutation p.R274C 0.54 deleterious(0.02) probably_damaging(0.94) TCGA-BR-8078-01 22 45580379 45580379 C T NUP50 Missense_Mutation p.T417M 0.25 deleterious(0) possibly_damaging(0.874) TCGA-BR-8078-01 22 46765689 46765689 C T CELSR1 Missense_Mutation p.G2591D 0.21 deleterious(0) probably_damaging(1) TCGA-BR-8078-01 22 46931227 46931227 C - CELSR1 Frame_Shift_Del p.G614Afs*54 0.21 TCGA-BR-8078-01 22 50169703 50169703 C T BRD1 Missense_Mutation p.A945T 0.39 deleterious(0) possibly_damaging(0.527) TCGA-BR-8078-01 22 50582604 50582604 C T MOV10L1 Silent p.L813L 0.37 TCGA-BR-8078-01 22 51043393 51043393 G A MAPK8IP2 Missense_Mutation p.G555S 0.21 tolerated(0.77) benign(0.002) TCGA-BR-8078-01 2 100170848 100170848 C T AFF3 Missense_Mutation p.V1187I 0.41 deleterious(0) possibly_damaging(0.54) TCGA-BR-8078-01 2 101607279 101607279 G A NPAS2 Missense_Mutation p.G686R 0.29 tolerated(0.43) possibly_damaging(0.66) TCGA-BR-8078-01 2 103431478 103431479 - T TMEM182 3'UTR 0.29 TCGA-BR-8078-01 2 107459775 107459775 C T ST6GAL2 Missense_Mutation p.R220H 0.31 probably_damaging(0.975) TCGA-BR-8078-01 2 110373095 110373095 C T SOWAHC Silent p.T343T 0.38 TCGA-BR-8078-01 2 110926098 110926098 T - NPHP1 Frame_Shift_Del p.K185Nfs*7 0.26 TCGA-BR-8078-01 2 112620029 112620029 G A ANAPC1 Missense_Mutation p.T400M 0.15 tolerated(0.46) benign(0.005) TCGA-BR-8078-01 2 112686911 112686911 G A MERTK Silent p.P92P 0.29 TCGA-BR-8078-01 2 113306901 113306901 A G POLR1B Missense_Mutation p.M184V 0.39 tolerated(1) benign(0.031) TCGA-BR-8078-01 2 11777871 11777871 G A GREB1 Silent p.P1792P 0.28 TCGA-BR-8078-01 2 118860856 118860856 C T INSIG2 Missense_Mutation p.R110W 0.28 deleterious(0) possibly_damaging(0.828) TCGA-BR-8078-01 2 11944581 11944581 C T LPIN1 Silent p.D731D 0.36 TCGA-BR-8078-01 2 120366155 120366155 C T PCDP1 Missense_Mutation p.A404V 0.30 tolerated(0.13) benign(0.06) TCGA-BR-8078-01 2 120677766 120677766 A - PTPN4 Frame_Shift_Del p.K318Rfs*10 0.28 TCGA-BR-8078-01 2 121107211 121107211 G A INHBB Missense_Mutation p.G329R 0.32 deleterious(0.01) probably_damaging(1) TCGA-BR-8078-01 2 122144775 122144775 C T CLASP1 Silent p.T1099T 0.19 TCGA-BR-8078-01 2 128238676 128238676 T - IWS1 Frame_Shift_Del p.S802Afs*7 0.17 TCGA-BR-8078-01 2 128396806 128396806 C T LIMS2 3'UTR 0.29 TCGA-BR-8078-01 2 128522235 128522235 A G WDR33 Intron 0.20 TCGA-BR-8078-01 2 130737596 130737596 G A RAB6C 5'UTR 0.17 TCGA-BR-8078-01 2 133542088 133542088 G A NCKAP5 Nonsense_Mutation p.Q766* 0.39 TCGA-BR-8078-01 2 135095925 135095925 C T MGAT5 Silent p.D247D 0.35 TCGA-BR-8078-01 2 135870727 135870727 G A RAB3GAP1 Silent p.G123G 0.32 TCGA-BR-8078-01 2 136567501 136567501 C T LCT Missense_Mutation p.E806K 0.34 deleterious(0) probably_damaging(0.974) TCGA-BR-8078-01 2 143799746 143799747 - T KYNU 3'UTR 0.20 TCGA-BR-8078-01 2 149511608 149511608 T C EPC2 Missense_Mutation p.I191T 0.40 deleterious(0.02) possibly_damaging(0.54) TCGA-BR-8078-01 2 149542480 149542480 C T EPC2 Missense_Mutation p.S754L 0.33 tolerated(0.33) benign(0.058) TCGA-BR-8078-01 2 152107417 152107419 TTA - RBM43 3'UTR 0.31 TCGA-BR-8078-01 2 152322592 152322592 A - RIF1 Frame_Shift_Del p.R2188Dfs*49 0.26 TCGA-BR-8078-01 2 152500522 152500522 T C NEB Missense_Mutation p.Y2589C 0.07 probably_damaging(1) TCGA-BR-8078-01 2 153551074 153551074 G A PRPF40A Silent p.S93S 0.48 TCGA-BR-8078-01 2 160104952 160104952 A G WDSUB1 Missense_Mutation p.S402P 0.28 tolerated(0.27) benign(0.007) TCGA-BR-8078-01 2 165551602 165551602 T - COBLL1 Frame_Shift_Del p.K805Sfs*7 0.23 TCGA-BR-8078-01 2 165972001 165972001 C T SCN3A Missense_Mutation p.E1160K 0.39 tolerated(0.12) benign(0.184) TCGA-BR-8078-01 2 166237172 166237172 G A SCN2A Missense_Mutation p.G1460D 0.33 deleterious(0) probably_damaging(1) TCGA-BR-8078-01 2 166755270 166755270 G A TTC21B Missense_Mutation p.A959V 0.31 deleterious(0) possibly_damaging(0.794) TCGA-BR-8078-01 2 168107104 168107104 G A XIRP2 Missense_Mutation p.E3068K 0.27 benign(0.014) TCGA-BR-8078-01 2 168107330 168107330 A G XIRP2 Missense_Mutation p.Q3143R 0.28 benign(0.022) TCGA-BR-8078-01 2 169717340 169717340 T - NOSTRIN Frame_Shift_Del p.L464* 0.27 TCGA-BR-8078-01 2 174062720 174062721 - A MLTK Intron 0.22 TCGA-BR-8078-01 2 174081950 174081950 A - MLTK Frame_Shift_Del p.K321Sfs*2 0.23 TCGA-BR-8078-01 2 176857112 176857112 T - KIAA1715 Frame_Shift_Del p.N35Ifs*12 0.29 TCGA-BR-8078-01 2 176948462 176948462 C A EVX2 Missense_Mutation p.G15W 0.32 deleterious(0) probably_damaging(0.998) TCGA-BR-8078-01 2 17698737 17698737 T - RAD51AP2 Frame_Shift_Del p.T316Lfs*2 0.23 TCGA-BR-8078-01 2 179396160 179396160 G A TTN Missense_Mutation p.A35061V 0.31 TCGA-BR-8078-01 2 179401713 179401713 T C TTN Missense_Mutation p.S33375G 0.33 TCGA-BR-8078-01 2 179402412 179402412 T C TTN Missense_Mutation p.I33174M 0.47 TCGA-BR-8078-01 2 179443562 179443562 G A TTN Missense_Mutation p.S22732L 0.34 TCGA-BR-8078-01 2 179477175 179477175 C T TTN Missense_Mutation p.V16693I 0.25 TCGA-BR-8078-01 2 179544075 179544075 G A TTN Missense_Mutation p.P11245S 0.30 TCGA-BR-8078-01 2 184025805 184025805 A - NUP35 Frame_Shift_Del p.D312Mfs*26 0.24 TCGA-BR-8078-01 2 189449083 189449083 G A GULP1 Missense_Mutation p.R234H 0.26 tolerated(0.15) benign(0.003) TCGA-BR-8078-01 2 192711451 192711451 G A SDPR Silent p.N67N 0.42 TCGA-BR-8078-01 2 201342603 201342603 G T SPATS2L Missense_Mutation p.R509L 0.29 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-BR-8078-01 2 201857061 201857061 T G FAM126B Missense_Mutation p.E258D 0.34 deleterious(0.01) probably_damaging(0.976) TCGA-BR-8078-01 2 203379644 203379644 T C BMPR2 Missense_Mutation p.M188T 0.32 deleterious(0.01) benign(0.079) TCGA-BR-8078-01 2 204820440 204820440 T C ICOS Missense_Mutation p.I47T 0.32 tolerated(1) benign(0.001) TCGA-BR-8078-01 2 207174428 207174428 A - ZDBF2 Frame_Shift_Del p.K1728Nfs*5 0.32 TCGA-BR-8078-01 2 207988869 207988869 C T KLF7 Missense_Mutation p.S121N 0.23 tolerated(0.37) benign(0.047) TCGA-BR-8078-01 2 20870956 20870956 C T GDF7 Missense_Mutation p.A375V 0.45 deleterious(0) probably_damaging(0.987) TCGA-BR-8078-01 2 209010499 209010499 G - CRYGB Frame_Shift_Del p.P84Rfs*8 0.21 TCGA-BR-8078-01 2 210887719 210887719 T A KANSL1L Missense_Mutation p.Y973F 0.25 tolerated_low_confidence(0.51) benign(0.012) TCGA-BR-8078-01 2 21228488 21228488 A G APOB Missense_Mutation p.V3751A 0.33 probably_damaging(0.975) TCGA-BR-8078-01 2 215884317 215884317 T - ABCA12 Frame_Shift_Del p.V498* 0.32 TCGA-BR-8078-01 2 216245649 216245649 A G FN1 Silent p.G1773G 0.28 TCGA-BR-8078-01 2 219736388 219736388 G A WNT6 Silent p.P161P 0.30 TCGA-BR-8078-01 2 219878239 219878239 A G CCDC108 Splice_Site p.X1282_splice 0.44 TCGA-BR-8078-01 2 220379756 220379756 G A ASIC4 Missense_Mutation p.A231T 0.12 tolerated(0.44) possibly_damaging(0.837) TCGA-BR-8078-01 2 220399935 220399935 C - ASIC4 Frame_Shift_Del p.C483Afs*3 0.20 TCGA-BR-8078-01 2 220421318 220421318 G A OBSL1 Silent p.V1398V 0.30 TCGA-BR-8078-01 2 220505562 220505562 G A SLC4A3 Missense_Mutation p.A1194T 0.36 deleterious(0.04) benign(0.011) TCGA-BR-8078-01 2 225266244 225266244 C A FAM124B Missense_Mutation p.R81M 0.25 deleterious(0) probably_damaging(0.985) TCGA-BR-8078-01 2 225378351 225378351 C T CUL3 Missense_Mutation p.A182T 0.28 tolerated(0.59) probably_damaging(0.909) TCGA-BR-8078-01 2 227661217 227661217 G - IRS1 Frame_Shift_Del p.S747Pfs*196 0.24 TCGA-BR-8078-01 2 229890193 229890193 T C PID1 3'UTR 0.45 TCGA-BR-8078-01 2 230655844 230655844 C T TRIP12 Nonsense_Mutation p.W1438* 0.29 TCGA-BR-8078-01 2 234835263 234835263 C T TRPM8 Silent p.S27S 0.15 TCGA-BR-8078-01 2 235949994 235949994 T - SH3BP4 Frame_Shift_Del p.F195Lfs*75 0.23 TCGA-BR-8078-01 2 235951125 235951125 G A SH3BP4 Missense_Mutation p.R571H 0.06 tolerated(0.72) benign(0.117) TCGA-BR-8078-01 2 237029036 237029036 C T AGAP1 Missense_Mutation p.A772V 0.32 deleterious(0.04) benign(0.099) TCGA-BR-8078-01 2 238277416 238277416 G A COL6A3 Missense_Mutation p.R1564C 0.28 probably_damaging(0.915) TCGA-BR-8078-01 2 239079047 239079047 A - ILKAP 3'UTR 0.50 TCGA-BR-8078-01 2 239082212 239082212 G A ILKAP Missense_Mutation p.P307S 0.42 deleterious(0) probably_damaging(1) TCGA-BR-8078-01 2 239162216 239162216 G A PER2 Silent p.P816P 0.39 TCGA-BR-8078-01 2 241516125 241516125 A G RNPEPL1 Missense_Mutation p.T331A 0.15 tolerated(0.09) possibly_damaging(0.492) TCGA-BR-8078-01 2 241536099 241536099 G A CAPN10 Missense_Mutation p.A495T 0.10 tolerated(0.13) benign(0.122) TCGA-BR-8078-01 2 242128129 242128129 G A ANO7 Missense_Mutation p.A35T 0.17 tolerated_low_confidence(0.26) benign(0) TCGA-BR-8078-01 2 242179175 242179175 G A HDLBP Missense_Mutation p.R818C 0.20 deleterious(0) probably_damaging(0.995) TCGA-BR-8078-01 2 242741376 242741376 G A GAL3ST2 Silent p.A100A 0.20 TCGA-BR-8078-01 2 27430333 27430333 C T SLC5A6 Silent p.A62A 0.40 TCGA-BR-8078-01 2 28855889 28855889 G A PLB1 Missense_Mutation p.A1361T 0.39 deleterious(0) probably_damaging(0.957) TCGA-BR-8078-01 2 33359851 33359851 C T LTBP1 Intron 0.26 TCGA-BR-8078-01 2 45236072 45236072 G A SIX2 Missense_Mutation p.R60C 0.16 deleterious(0) possibly_damaging(0.676) TCGA-BR-8078-01 2 46203633 46203633 G A PRKCE Missense_Mutation p.V160I 0.30 tolerated(0.13) benign(0.019) TCGA-BR-8078-01 2 48722901 48722901 T C PPP1R21 Silent p.L561L 0.28 TCGA-BR-8078-01 2 48914783 48914783 T - LHCGR 3'UTR 0.57 TCGA-BR-8078-01 2 50280724 50280724 A G NRXN1 Silent p.R1311R 0.29 TCGA-BR-8078-01 2 51255184 51255184 G A NRXN1 Silent p.C76C 0.48 TCGA-BR-8078-01 2 54876770 54876770 C T SPTBN1 Missense_Mutation p.R1741W 0.27 deleterious(0) probably_damaging(0.966) TCGA-BR-8078-01 2 5833132 5833132 C T SOX11 Silent p.S93S 0.22 TCGA-BR-8078-01 2 61148969 61148969 T C REL Missense_Mutation p.Y387H 0.28 deleterious(0.04) possibly_damaging(0.878) TCGA-BR-8078-01 2 61575065 61575065 C T USP34 Missense_Mutation p.R742Q 0.40 tolerated_low_confidence(0.1) benign(0.001) TCGA-BR-8078-01 2 61711237 61711237 A C XPO1 Missense_Mutation p.F838V 0.12 deleterious(0) possibly_damaging(0.893) TCGA-BR-8078-01 2 63176135 63176136 - A EHBP1 Frame_Shift_Ins p.T756Nfs*8 0.21 TCGA-BR-8078-01 2 63349066 63349066 C T WDPCP 3'UTR 0.38 TCGA-BR-8078-01 2 64779393 64779393 G A AFTPH Missense_Mutation p.R262Q 0.38 tolerated(1) benign(0.001) TCGA-BR-8078-01 2 65298713 65298713 C A CEP68 Silent p.P161P 0.15 TCGA-BR-8078-01 2 68270087 68270088 - T C1D Frame_Shift_Ins p.N120Kfs*17 0.25 TCGA-BR-8078-01 2 68691329 68691329 T - FBXO48 3'UTR 0.33 TCGA-BR-8078-01 2 70890788 70890788 G A ADD2 Silent p.N650N 0.41 TCGA-BR-8078-01 2 71825778 71825778 C T DYSF Missense_Mutation p.T1220M 0.28 deleterious(0) probably_damaging(0.998) TCGA-BR-8078-01 2 71908139 71908139 G T DYSF Silent p.L2024L 0.46 TCGA-BR-8078-01 2 73677596 73677596 A G ALMS1 Silent p.S1313S 0.33 TCGA-BR-8078-01 2 75107417 75107417 G - HK2 Frame_Shift_Del p.V431Cfs*26 0.20 TCGA-BR-8078-01 2 75347720 75347720 C T TACR1 Silent p.P188P 0.25 TCGA-BR-8078-01 2 85554669 85554669 A G TGOLN2 Silent p.T62T 0.32 TCGA-BR-8078-01 2 86258589 86258589 G A POLR1A Missense_Mutation p.T1481M 0.22 tolerated(0.09) benign(0.022) TCGA-BR-8078-01 2 86327260 86327260 T C POLR1A Missense_Mutation p.Y38C 0.33 deleterious(0.04) possibly_damaging(0.706) TCGA-BR-8078-01 2 89278145 89278145 C T IGKV3-7 Missense_Mutation p.A64T 0.20 deleterious(0.03) benign(0.231) TCGA-BR-8078-01 2 90044341 90044341 A G IGKV2D-24 Missense_Mutation p.S88G 0.06 deleterious(0.02) benign(0.211) TCGA-BR-8078-01 2 96687157 96687157 C - GPAT2 3'Flank 0.42 TCGA-BR-8078-01 2 96691753 96691753 A G GPAT2 Missense_Mutation p.I388T 0.15 tolerated(0.46) unknown(0) TCGA-BR-8078-01 2 97217956 97217956 G A ARID5A Missense_Mutation p.R564H 0.25 tolerated(0.05) benign(0.106) TCGA-BR-8078-01 2 97530066 97530066 C T SEMA4C Missense_Mutation p.R339Q 0.33 tolerated(0.17) benign(0.01) TCGA-BR-8078-01 2 98737906 98737906 C T VWA3B Silent p.A229A 0.28 TCGA-BR-8078-01 3 100074044 100074044 C T NIT2 Missense_Mutation p.R255C 0.28 deleterious(0) probably_damaging(0.999) TCGA-BR-8078-01 3 100621530 100621530 T C ABI3BP Missense_Mutation p.D94G 0.33 deleterious(0) possibly_damaging(0.539) TCGA-BR-8078-01 3 101477207 101477207 A G CEP97 Missense_Mutation p.Y586C 0.20 tolerated(0.14) benign(0.019) TCGA-BR-8078-01 3 102196407 102196407 G T ZPLD1 Missense_Mutation p.R414M 0.27 deleterious_low_confidence(0.05) possibly_damaging(0.849) TCGA-BR-8078-01 3 108159966 108159966 G A MYH15 Missense_Mutation p.R953W 0.31 deleterious(0.04) benign(0.022) TCGA-BR-8078-01 3 108363342 108363342 G A DZIP3 Silent p.P491P 0.07 TCGA-BR-8078-01 3 11059528 11059528 G T SLC6A1 Splice_Site p.X80_splice 0.24 TCGA-BR-8078-01 3 110852822 110852822 A - PVRL3 Frame_Shift_Del p.E473Kfs*6 0.24 TCGA-BR-8078-01 3 111632563 111632563 A G PHLDB2 Intron 0.27 TCGA-BR-8078-01 3 111983101 111983101 T C SLC9C1 Missense_Mutation p.E323G 0.45 deleterious(0.02) benign(0.034) TCGA-BR-8078-01 3 112005609 112005610 - A SLC9C1 Frame_Shift_Ins p.S11Qfs*3 0.31 TCGA-BR-8078-01 3 112357269 112357269 T - CCDC80 Frame_Shift_Del p.K495Rfs*60 0.27 TCGA-BR-8078-01 3 112992173 112992173 C T BOC Missense_Mutation p.R407W 0.17 tolerated(0.18) probably_damaging(0.924) TCGA-BR-8078-01 3 113003371 113003371 C T BOC Missense_Mutation p.P948L 0.31 deleterious_low_confidence(0.05) benign(0.003) TCGA-BR-8078-01 3 118621453 118621453 A G IGSF11 Missense_Mutation p.Y404H 0.34 tolerated(0.24) benign(0.009) TCGA-BR-8078-01 3 118866418 118866418 C T C3orf30 Missense_Mutation p.A461V 0.08 tolerated(0.07) benign(0.399) TCGA-BR-8078-01 3 119198988 119198988 C T POGLUT1 Missense_Mutation p.R183W 0.32 deleterious(0) probably_damaging(1) TCGA-BR-8078-01 3 121395743 121395743 G A GOLGB1 Silent p.S3058S 0.24 TCGA-BR-8078-01 3 121554180 121554180 T C EAF2 Silent p.V16V 0.21 TCGA-BR-8078-01 3 122289345 122289345 G A DTX3L Missense_Mutation p.R660Q 0.30 deleterious(0) probably_damaging(0.983) TCGA-BR-8078-01 3 122399864 122399864 G A PARP14 Missense_Mutation p.R45H 0.50 tolerated(0.66) benign(0.001) TCGA-BR-8078-01 3 122631702 122631702 G - SEMA5B Frame_Shift_Del p.Q959Rfs*147 0.26 TCGA-BR-8078-01 3 122634315 122634315 G T SEMA5B Missense_Mutation p.P708T 0.23 tolerated(0.12) benign(0.06) TCGA-BR-8078-01 3 123665727 123665727 T - CCDC14 Frame_Shift_Del p.N382Mfs*2 0.25 TCGA-BR-8078-01 3 124438053 124438053 C - RP11-71H17.7 5'Flank 0.28 TCGA-BR-8078-01 3 124731472 124731472 G A HEG1 Missense_Mutation p.A984V 0.26 deleterious(0.01) possibly_damaging(0.521) TCGA-BR-8078-01 3 125032219 125032219 T - ZNF148 Frame_Shift_Del p.N89Mfs*24 0.26 TCGA-BR-8078-01 3 125509345 125509345 C T MIR548I1 RNA 0.31 TCGA-BR-8078-01 3 12856666 12856666 G A CAND2 Missense_Mutation p.D345N 0.29 deleterious(0) possibly_damaging(0.901) TCGA-BR-8078-01 3 128889188 128889188 A G CNBP 3'UTR 0.36 TCGA-BR-8078-01 3 129305017 129305017 C T PLXND1 Silent p.T573T 0.25 TCGA-BR-8078-01 3 12977371 12977371 G A IQSEC1 Missense_Mutation p.S396L 0.41 deleterious_low_confidence(0) benign(0.155) TCGA-BR-8078-01 3 130346200 130346200 G A COL6A6 Missense_Mutation p.R1660H 0.06 tolerated(0.06) benign(0.001) TCGA-BR-8078-01 3 131388544 131388544 C T CPNE4 Missense_Mutation p.S219N 0.27 tolerated(0.92) benign(0.089) TCGA-BR-8078-01 3 132395425 132395426 - A UBA5 3'UTR 0.35 TCGA-BR-8078-01 3 13363299 13363299 G A NUP210 Missense_Mutation p.T1651M 0.29 deleterious(0) probably_damaging(0.932) TCGA-BR-8078-01 3 1371501 1371502 AA - CNTN6 Frame_Shift_Del p.K418Vfs*33 0.34 TCGA-BR-8078-01 3 137822384 137822384 G A DZIP1L Missense_Mutation p.R144C 0.30 deleterious(0) probably_damaging(0.998) TCGA-BR-8078-01 3 137822423 137822423 G A DZIP1L Missense_Mutation p.R131C 0.33 deleterious(0) probably_damaging(0.984) TCGA-BR-8078-01 3 137892418 137892418 C - DBR1 Frame_Shift_Del p.G83Efs*25 0.31 TCGA-BR-8078-01 3 140282887 140282887 G A CLSTN2 Missense_Mutation p.R856Q 0.32 deleterious(0.03) benign(0.277) TCGA-BR-8078-01 3 141162875 141162875 A - ZBTB38 Frame_Shift_Del p.T551Qfs*6 0.27 TCGA-BR-8078-01 3 142840396 142840396 G A CHST2 Silent p.T246T 0.28 TCGA-BR-8078-01 3 147113965 147113965 C T ZIC4 Missense_Mutation p.R171H 0.36 deleterious(0.01) probably_damaging(0.976) TCGA-BR-8078-01 3 147128745 147128745 C A ZIC1 Silent p.P282P 0.21 TCGA-BR-8078-01 3 148545657 148545657 A G CPB1 Missense_Mutation p.H16R 0.34 tolerated(0.41) possibly_damaging(0.762) TCGA-BR-8078-01 3 148789134 148789134 G A HLTF Nonsense_Mutation p.R267* 0.33 TCGA-BR-8078-01 3 14964562 14964562 C T FGD5 Missense_Mutation p.R1273W 0.27 deleterious(0) probably_damaging(0.999) TCGA-BR-8078-01 3 150421356 150421356 G A FAM194A Silent p.F110F 0.30 TCGA-BR-8078-01 3 151112591 151112591 A G MED12L Missense_Mutation p.K1884R 0.28 tolerated_low_confidence(0.44) benign(0.11) TCGA-BR-8078-01 3 15292713 15292713 T - CAPN7 Frame_Shift_Del p.F798Sfs*103 0.25 TCGA-BR-8078-01 3 157296111 157296111 C T C3orf55 Intron 0.47 TCGA-BR-8078-01 3 16345145 16345145 T - OXNAD1 3'UTR 0.40 TCGA-BR-8078-01 3 167035316 167035316 A G ZBBX Silent p.D351D 0.32 TCGA-BR-8078-01 3 167543189 167543189 T - SERPINI1 3'UTR 0.26 TCGA-BR-8078-01 3 169511641 169511641 A G LRRC34 Intron 0.26 TCGA-BR-8078-01 3 170781609 170781609 T C TNIK 3'UTR 0.20 TCGA-BR-8078-01 3 176769342 176769342 T - TBL1XR1 Frame_Shift_Del p.N126Mfs*16 0.27 TCGA-BR-8078-01 3 179052260 179052260 T - ZNF639 3'UTR 0.31 TCGA-BR-8078-01 3 179288016 179288016 A - ACTL6A Frame_Shift_Del p.N90Mfs*47 0.23 TCGA-BR-8078-01 3 179408081 179408081 T - USP13 Frame_Shift_Del p.L118* 0.29 TCGA-BR-8078-01 3 183503960 183503960 C A YEATS2 Silent p.T928T 0.24 TCGA-BR-8078-01 3 183884401 183884401 A G DVL3 Missense_Mutation p.T330A 0.30 tolerated(0.05) possibly_damaging(0.472) TCGA-BR-8078-01 3 183906039 183906039 G C ABCF3 Missense_Mutation p.S227T 0.34 deleterious(0.02) benign(0.216) TCGA-BR-8078-01 3 183978963 183978963 G A CAMK2N2 Silent p.F37F 0.45 TCGA-BR-8078-01 3 186360342 186360342 G A FETUB Missense_Mutation p.R140H 0.29 deleterious(0.02) probably_damaging(0.99) TCGA-BR-8078-01 3 187446270 187446270 G - BCL6 Frame_Shift_Del p.P473Rfs*117 0.39 TCGA-BR-8078-01 3 188123973 188123973 G A LPP Missense_Mutation p.R22Q 0.31 deleterious(0) probably_damaging(0.996) TCGA-BR-8078-01 3 194118562 194118562 C A GP5 Missense_Mutation p.E150D 0.30 deleterious(0.04) benign(0.327) TCGA-BR-8078-01 3 194150868 194150868 C T ATP13A3 Missense_Mutation p.E904K 0.24 deleterious(0) probably_damaging(0.935) TCGA-BR-8078-01 3 195027343 195027343 C T ACAP2 Missense_Mutation p.S338N 0.34 deleterious(0.03) probably_damaging(0.996) TCGA-BR-8078-01 3 196281462 196281462 G A WDR53 Nonsense_Mutation p.Q233* 0.29 TCGA-BR-8078-01 3 27758575 27758575 A - EOMES Frame_Shift_Del p.Y683Tfs*9 0.25 TCGA-BR-8078-01 3 3078979 3078979 C T CNTN4 Missense_Mutation p.R687C 0.19 tolerated(0.05) possibly_damaging(0.676) TCGA-BR-8078-01 3 3221317 3221317 G A CRBN Missense_Mutation p.P19S 0.30 tolerated_low_confidence(0.5) benign(0.003) TCGA-BR-8078-01 3 33877563 33877563 G A PDCD6IP Missense_Mutation p.A293T 0.35 tolerated(0.2) benign(0.006) TCGA-BR-8078-01 3 38039070 38039070 A G VILL Missense_Mutation p.M220V 0.36 tolerated(0.05) benign(0.06) TCGA-BR-8078-01 3 38159370 38159370 T C DLEC1 Missense_Mutation p.L1520P 0.27 deleterious(0) probably_damaging(0.979) TCGA-BR-8078-01 3 38592496 38592496 G A SCN5A Silent p.D1789D 0.29 TCGA-BR-8078-01 3 38640419 38640419 G A SCN5A Silent p.S671S 0.36 TCGA-BR-8078-01 3 38770179 38770179 T C SCN10A Missense_Mutation p.M832V 0.35 deleterious(0) possibly_damaging(0.803) TCGA-BR-8078-01 3 38949441 38949441 T - SCN11A Frame_Shift_Del p.K491Sfs*5 0.28 TCGA-BR-8078-01 3 39141846 39141847 - G GORASP1 Frame_Shift_Ins p.E239Rfs*14 0.24 TCGA-BR-8078-01 3 40293447 40293447 C A MYRIP Missense_Mutation p.T835K 0.23 deleterious_low_confidence(0.02) benign(0.005) TCGA-BR-8078-01 3 40468948 40468951 AAGA - ENTPD3 Frame_Shift_Del p.K515Gfs*48 0.29 TCGA-BR-8078-01 3 40557432 40557433 - G ZNF620 Frame_Shift_Ins p.L119Pfs*10 0.27 TCGA-BR-8078-01 3 44670856 44670856 G A ZNF197 Nonsense_Mutation p.W70* 0.32 TCGA-BR-8078-01 3 45077264 45077264 G A CLEC3B Missense_Mutation p.A153T 0.35 tolerated(0.87) benign(0.002) TCGA-BR-8078-01 3 45077417 45077417 C T CLEC3B 3'UTR 0.19 TCGA-BR-8078-01 3 46011206 46011206 G T FYCO1 Silent p.R197R 0.31 TCGA-BR-8078-01 3 46014624 46014624 C T FYCO1 Silent p.A165A 0.31 TCGA-BR-8078-01 3 46063400 46063400 A - XCR1 Frame_Shift_Del p.Y14Tfs*33 0.23 TCGA-BR-8078-01 3 46944891 46944891 C - PTH1R Frame_Shift_Del p.R511Vfs*106 0.21 TCGA-BR-8078-01 3 47042822 47042823 - G NBEAL2 Frame_Shift_Ins p.V1515Gfs*23 0.32 TCGA-BR-8078-01 3 47451532 47451532 C - PTPN23 Frame_Shift_Del p.P750Lfs*53 0.50 TCGA-BR-8078-01 3 47454113 47454115 AGA - PTPN23 In_Frame_Del p.K1477del 0.33 TCGA-BR-8078-01 3 48336260 48336260 G A NME6 Missense_Mutation p.A151V 0.30 tolerated(0.53) benign(0.075) TCGA-BR-8078-01 3 48451704 48451704 C T PLXNB1 Splice_Site p.X1869_splice 0.32 TCGA-BR-8078-01 3 48696997 48696997 C T CELSR3 Missense_Mutation p.R1024Q 0.35 tolerated(0.06) possibly_damaging(0.836) TCGA-BR-8078-01 3 48698761 48698761 G A CELSR3 Missense_Mutation p.A436V 0.42 tolerated(0.17) benign(0.003) TCGA-BR-8078-01 3 48965138 48965138 G - ARIH2 Frame_Shift_Del p.A51Lfs*14 0.28 TCGA-BR-8078-01 3 49053507 49053507 A G DALRD3 Silent p.L448L 0.29 TCGA-BR-8078-01 3 49094758 49094758 G A QRICH1 Missense_Mutation p.A292V 0.34 deleterious(0.01) benign(0.297) TCGA-BR-8078-01 3 49294662 49294662 A G CCDC36 Missense_Mutation p.K578E 0.34 tolerated(0.08) possibly_damaging(0.789) TCGA-BR-8078-01 3 50129595 50129595 G A RBM5 Missense_Mutation p.R46Q 0.32 tolerated(0.33) benign(0.238) TCGA-BR-8078-01 3 51263127 51263127 G A DOCK3 Missense_Mutation p.E434K 0.23 deleterious(0) probably_damaging(0.971) TCGA-BR-8078-01 3 51417604 51417605 CC - DOCK3 Frame_Shift_Del p.P1852Sfs*46 0.23 TCGA-BR-8078-01 3 52097481 52097481 G A LINC00696 Silent p.G29G 0.11 TCGA-BR-8078-01 3 52109719 52109719 C T POC1A 3'UTR 0.35 TCGA-BR-8078-01 3 52539758 52539758 C A STAB1 Missense_Mutation p.D552E 0.41 tolerated(0.06) probably_damaging(0.951) TCGA-BR-8078-01 3 52546401 52546401 C - STAB1 Frame_Shift_Del p.P978Lfs*57 0.27 TCGA-BR-8078-01 3 52839838 52839838 C A ITIH3 Missense_Mutation p.P630T 0.30 tolerated(0.09) benign(0.001) TCGA-BR-8078-01 3 53894187 53894187 T G IL17RB Missense_Mutation p.L293R 0.26 deleterious(0.03) possibly_damaging(0.653) TCGA-BR-8078-01 3 55513442 55513442 C T WNT5A Silent p.A97A 0.33 TCGA-BR-8078-01 3 56789047 56789047 T C ARHGEF3 Missense_Mutation p.N145D 0.43 tolerated(0.35) benign(0.096) TCGA-BR-8078-01 3 62248542 62248542 A - PTPRG Frame_Shift_Del p.N878Tfs*7 0.17 TCGA-BR-8078-01 3 64184616 64184616 G T PRICKLE2 5'UTR 0.23 TCGA-BR-8078-01 3 64607966 64607966 C T ADAMTS9 Missense_Mutation p.R865H 0.37 tolerated(0.25) benign(0.15) TCGA-BR-8078-01 3 65361570 65361571 - C MAGI1 Frame_Shift_Ins p.S1016Efs*4 0.22 TCGA-BR-8078-01 3 6903155 6903155 C T GRM7 Missense_Mutation p.A27V 0.44 tolerated(0.6) benign(0) TCGA-BR-8078-01 3 69998213 69998213 G A MITF Silent p.S258S 0.14 TCGA-BR-8078-01 3 71247446 71247446 G A FOXP1 Silent p.C29C 0.07 TCGA-BR-8078-01 3 87027688 87027688 G T VGLL3 Missense_Mutation p.P131T 0.37 tolerated(0.12) benign(0.085) TCGA-BR-8078-01 3 88040823 88040823 T - HTR1F Frame_Shift_Del p.F310Lfs*2 0.25 TCGA-BR-8078-01 3 96533512 96533512 G A EPHA6 Silent p.P15P 0.44 TCGA-BR-8078-01 3 97686167 97686167 T C MINA Missense_Mutation p.S91G 0.31 tolerated(0.36) benign(0.008) TCGA-BR-8078-01 4 100434209 100434209 T C C4orf17 5'UTR 0.39 TCGA-BR-8078-01 4 101108887 101108887 C A DDIT4L Missense_Mutation p.V177F 0.27 deleterious(0) possibly_damaging(0.907) TCGA-BR-8078-01 4 10447795 10447795 G A ZNF518B Missense_Mutation p.A53V 0.38 tolerated(0.27) benign(0.265) TCGA-BR-8078-01 4 111474510 111474510 T G ENPEP Silent p.T847T 0.31 TCGA-BR-8078-01 4 114824717 114824717 C T ARSJ Silent p.T171T 0.35 TCGA-BR-8078-01 4 119978598 119978598 C - SYNPO2 Frame_Shift_Del p.I1101Ffs*22 0.23 TCGA-BR-8078-01 4 121616252 121616252 C A PRDM5 3'UTR 0.22 TCGA-BR-8078-01 4 123193562 123193562 T C KIAA1109 Splice_Site p.X2816_splice 0.36 TCGA-BR-8078-01 4 123748461 123748461 C - FGF2 Frame_Shift_Del p.D179Tfs*40 0.26 TCGA-BR-8078-01 4 126372724 126372724 T C FAT4 Missense_Mutation p.M3518T 0.29 benign(0.262) TCGA-BR-8078-01 4 126398521 126398522 - A FAT4 Intron 0.27 TCGA-BR-8078-01 4 134073510 134073510 C T PCDH10 Missense_Mutation p.R739C 0.28 deleterious(0) possibly_damaging(0.891) TCGA-BR-8078-01 4 139153476 139153476 A - SLC7A11 Frame_Shift_Del p.F155Lfs*19 0.26 TCGA-BR-8078-01 4 140624683 140624683 A - MGST2 Frame_Shift_Del p.K103Nfs*8 0.18 TCGA-BR-8078-01 4 142143532 142143532 A - ZNF330 Frame_Shift_Del p.K5Rfs*18 0.38 TCGA-BR-8078-01 4 143045801 143045801 C T INPP4B Silent p.A611A 0.47 TCGA-BR-8078-01 4 145629318 145629318 A G HHIP Splice_Site p.X386_splice 0.15 TCGA-BR-8078-01 4 146791492 146791492 G T ZNF827 Missense_Mutation p.S629Y 0.31 deleterious(0.01) benign(0.404) TCGA-BR-8078-01 4 151388891 151388891 G A LRBA Silent p.V2249V 0.15 TCGA-BR-8078-01 4 151749605 151749605 C T LRBA Missense_Mutation p.G1633D 0.34 deleterious(0.05) possibly_damaging(0.728) TCGA-BR-8078-01 4 152024919 152024919 C T RPS3A Intron 0.25 TCGA-BR-8078-01 4 154519885 154519885 G A KIAA0922 Splice_Site p.X756_splice 0.40 TCGA-BR-8078-01 4 154927 154927 T - ZNF718 RNA 0.36 TCGA-BR-8078-01 4 155457821 155457821 A G PLRG1 3'UTR 0.41 TCGA-BR-8078-01 4 162402271 162402271 C A FSTL5 Missense_Mutation p.W503C 0.09 deleterious(0) probably_damaging(0.99) TCGA-BR-8078-01 4 163032431 163032431 G A FSTL5 Nonsense_Mutation p.R40* 0.30 TCGA-BR-8078-01 4 164272058 164272058 T C NPY5R Silent p.F211F 0.36 TCGA-BR-8078-01 4 169105789 169105789 G A ANXA10 Missense_Mutation p.R288Q 0.29 tolerated(0.15) benign(0.029) TCGA-BR-8078-01 4 170077617 170077617 C A SH3RF1 Missense_Mutation p.A203S 0.30 deleterious(0) probably_damaging(0.996) TCGA-BR-8078-01 4 175749958 175749958 G T GLRA3 Missense_Mutation p.A2D 0.38 tolerated_low_confidence(0.16) benign(0.002) TCGA-BR-8078-01 4 175750010 175750010 T C GLRA3 5'UTR 0.40 TCGA-BR-8078-01 4 177650714 177650714 C A VEGFC Missense_Mutation p.A112S 0.34 deleterious(0.02) probably_damaging(0.996) TCGA-BR-8078-01 4 17838908 17838908 G A NCAPG Missense_Mutation p.V746I 0.34 tolerated(0.3) benign(0.008) TCGA-BR-8078-01 4 1834632 1834632 G A LETM1 Missense_Mutation p.R307C 0.36 deleterious(0) benign(0.427) TCGA-BR-8078-01 4 183651421 183651421 C T TENM3 Missense_Mutation p.S885L 0.29 deleterious(0) possibly_damaging(0.602) TCGA-BR-8078-01 4 184187099 184187099 A - WWC2 Frame_Shift_Del p.V736Yfs*49 0.25 TCGA-BR-8078-01 4 186299471 186299471 C T LRP2BP 5'UTR 0.53 TCGA-BR-8078-01 4 186508754 186508754 G A SORBS2 3'UTR 0.33 TCGA-BR-8078-01 4 20597434 20597434 G A SLIT2 Silent p.T1099T 0.36 TCGA-BR-8078-01 4 2306441 2306441 G A ZFYVE28 Silent p.A542A 0.41 TCGA-BR-8078-01 4 23830061 23830061 T - PPARGC1A Frame_Shift_Del p.K240Rfs*23 0.30 TCGA-BR-8078-01 4 25334885 25334886 - T ZCCHC4 Frame_Shift_Ins p.W137Cfs*5 0.24 TCGA-BR-8078-01 4 26431567 26431567 C T RBPJ Silent p.G325G 0.22 TCGA-BR-8078-01 4 2831861 2831861 C T SH3BP2 Missense_Mutation p.L467F 0.25 deleterious_low_confidence(0.03) possibly_damaging(0.643) TCGA-BR-8078-01 4 30723161 30723161 C T PCDH7 Silent p.A39A 0.24 TCGA-BR-8078-01 4 36081868 36081868 C T ARAP2 Silent p.T1526T 0.18 TCGA-BR-8078-01 4 36230898 36230898 T - ARAP2 Frame_Shift_Del p.M71Cfs*34 0.24 TCGA-BR-8078-01 4 38690460 38690460 A - KLF3 Frame_Shift_Del p.K106Nfs*21 0.30 TCGA-BR-8078-01 4 39482830 39482830 A C LIAS 3'Flank 0.29 TCGA-BR-8078-01 4 41956223 41956223 A G TMEM33 3'UTR 0.41 TCGA-BR-8078-01 4 41984375 41984375 C T DCAF4L1 Missense_Mutation p.A189V 0.07 tolerated(0.08) possibly_damaging(0.545) TCGA-BR-8078-01 4 48894833 48894833 A - OCIAD2 Frame_Shift_Del p.F113Lfs*27 0.26 TCGA-BR-8078-01 4 52861964 52861965 - T LRRC66 Frame_Shift_Ins p.C409Vfs*20 0.53 TCGA-BR-8078-01 4 54966575 54966575 C G GSX2 Missense_Mutation p.L22V 0.30 tolerated(0.43) probably_damaging(0.978) TCGA-BR-8078-01 4 5528018 5528018 T C C4orf6 Missense_Mutation p.V81A 0.25 benign(0) TCGA-BR-8078-01 4 57318172 57318172 G A PAICS Silent p.A309A 0.30 TCGA-BR-8078-01 4 62845386 62845386 C T LPHN3 Missense_Mutation p.R903W 0.29 deleterious(0) probably_damaging(0.994) TCGA-BR-8078-01 4 6325117 6325117 G T PPP2R2C Missense_Mutation p.A419D 0.31 deleterious(0.04) benign(0.282) TCGA-BR-8078-01 4 6611012 6611012 C T MAN2B2 Nonsense_Mutation p.Q665* 0.31 TCGA-BR-8078-01 4 677076 677076 G A MFSD7 Silent p.P358P 0.26 TCGA-BR-8078-01 4 69179752 69179753 AC - YTHDC1 3'UTR 0.24 TCGA-BR-8078-01 4 77095433 77095433 A G SCARB2 Silent p.S286S 0.07 TCGA-BR-8078-01 4 780365 780365 T A CPLX1 Missense_Mutation p.E110V 0.27 deleterious(0) possibly_damaging(0.784) TCGA-BR-8078-01 4 83838125 83838125 G T THAP9 Missense_Mutation p.G254C 0.24 deleterious(0) probably_damaging(1) TCGA-BR-8078-01 4 83905920 83905920 A G LIN54 Silent p.D26D 0.31 TCGA-BR-8078-01 4 8401309 8401309 C T ACOX3 Missense_Mutation p.E283K 0.29 deleterious(0.03) benign(0.068) TCGA-BR-8078-01 4 8412062 8412063 - G ACOX3 Frame_Shift_Ins p.D189* 0.21 TCGA-BR-8078-01 4 85414577 85414577 G T NKX6-1 Missense_Mutation p.D323E 0.24 deleterious(0.04) unknown(0) TCGA-BR-8078-01 4 85617218 85617218 A - WDFY3 Frame_Shift_Del p.Y2936Mfs*14 0.17 TCGA-BR-8078-01 4 85676453 85676453 A - WDFY3 Frame_Shift_Del p.L1842Yfs*10 0.24 TCGA-BR-8078-01 4 89653284 89653284 G A FAM13A Silent p.T904T 0.43 TCGA-BR-8078-01 4 94138146 94138146 A G GRID2 Intron 0.35 TCGA-BR-8078-01 4 94750382 94750382 G - ATOH1 Frame_Shift_Del p.E104Sfs*3 0.26 TCGA-BR-8078-01 4 96025646 96025646 C - BMPR1B Frame_Shift_Del p.R56Vfs*31 0.28 TCGA-BR-8078-01 4 96140171 96140171 C T UNC5C Missense_Mutation p.A532T 0.35 tolerated(0.23) benign(0.354) TCGA-BR-8078-01 4 96470039 96470039 G - UNC5C 5'UTR 0.18 TCGA-BR-8078-01 5 100238558 100238558 C T ST8SIA4 Silent p.T34T 0.22 TCGA-BR-8078-01 5 102237087 102237087 C T PAM Nonsense_Mutation p.R80* 0.19 TCGA-BR-8078-01 5 113698754 113698754 C T KCNN2 Silent p.G94G 0.32 TCGA-BR-8078-01 5 11384885 11384885 C T CTNND2 Missense_Mutation p.A357T 0.30 tolerated(0.3) benign(0.349) TCGA-BR-8078-01 5 114952054 114952054 C T TMED7-TICAM2 Missense_Mutation p.R176Q 0.26 deleterious_low_confidence(0) possibly_damaging(0.889) TCGA-BR-8078-01 5 122272504 122272504 C T SNX24 Missense_Mutation p.H46Y 0.13 deleterious(0) possibly_damaging(0.89) TCGA-BR-8078-01 5 122720714 122720714 A - CEP120 Frame_Shift_Del p.L565* 0.23 TCGA-BR-8078-01 5 129521085 129521085 T C CHSY3 Silent p.Y750Y 0.30 TCGA-BR-8078-01 5 131046332 131046332 G - FNIP1 Frame_Shift_Del p.R216Gfs*12 0.15 TCGA-BR-8078-01 5 134679016 134679016 T - H2AFY Frame_Shift_Del p.N296Tfs*11 0.25 TCGA-BR-8078-01 5 134871112 134871112 C T NEUROG1 Missense_Mutation p.R90H 0.50 deleterious(0) probably_damaging(0.962) TCGA-BR-8078-01 5 135186132 135186132 G A SLC25A48 Missense_Mutation p.V37I 0.29 tolerated(0.2) benign(0.005) TCGA-BR-8078-01 5 136834173 136834173 G A SPOCK1 Silent p.D25D 0.45 TCGA-BR-8078-01 5 137221839 137221839 C A MYOT Missense_Mutation p.P376H 0.34 deleterious(0) probably_damaging(1) TCGA-BR-8078-01 5 137225146 137225146 A G PKD2L2 5'Flank 0.20 TCGA-BR-8078-01 5 137288332 137288332 G A FAM13B Missense_Mutation p.R617W 0.25 deleterious(0) possibly_damaging(0.726) TCGA-BR-8078-01 5 13729644 13729644 A G DNAH5 Silent p.A3929A 0.29 TCGA-BR-8078-01 5 137802757 137802757 C T EGR1 Missense_Mutation p.P207S 0.27 deleterious(0.02) possibly_damaging(0.876) TCGA-BR-8078-01 5 13809285 13809285 C T DNAH5 Silent p.T2540T 0.19 TCGA-BR-8078-01 5 139574029 139574029 A C CYSTM1 Splice_Site 0.33 TCGA-BR-8078-01 5 140053757 140053757 G A HARS 3'UTR 0.41 TCGA-BR-8078-01 5 140056236 140056236 T C HARS Intron 0.33 TCGA-BR-8078-01 5 140167456 140167456 G A PCDHA1 Silent p.E527E 0.36 TCGA-BR-8078-01 5 140237453 140237453 C T PCDHA10 Missense_Mutation p.S607L 0.26 deleterious_low_confidence(0.01) benign(0.053) TCGA-BR-8078-01 5 140237811 140237811 C T PCDHA10 Silent p.T726T 0.40 TCGA-BR-8078-01 5 140250710 140250710 G A PCDHA11 Silent p.A674A 0.29 TCGA-BR-8078-01 5 140256956 140256956 G A PCDHA12 Silent p.T633T 0.31 TCGA-BR-8078-01 5 140261916 140261916 C T PCDHA13 Silent p.L21L 0.28 TCGA-BR-8078-01 5 140263419 140263419 G A PCDHA13 Silent p.P522P 0.32 TCGA-BR-8078-01 5 140307012 140307012 G A PCDHAC1 Missense_Mutation p.G179S 0.12 deleterious(0.03) possibly_damaging(0.758) TCGA-BR-8078-01 5 140348078 140348078 C T PCDHAC2 Missense_Mutation p.A576V 0.33 tolerated(0.11) benign(0.142) TCGA-BR-8078-01 5 140348558 140348558 C T PCDHAC2 Missense_Mutation p.A736V 0.21 tolerated(0.44) benign(0.006) TCGA-BR-8078-01 5 140482079 140482079 G A PCDHB3 Missense_Mutation p.G616S 0.27 tolerated_low_confidence(1) benign(0.022) TCGA-BR-8078-01 5 140590138 140590138 C T PCDHB12 Silent p.D553D 0.33 TCGA-BR-8078-01 5 140627572 140627572 T - PCDHB15 3'UTR 0.31 TCGA-BR-8078-01 5 140745565 140745565 C T PCDHGA5 Silent p.N556N 0.25 TCGA-BR-8078-01 5 140787998 140787998 G A PCDHGB6 Missense_Mutation p.V77I 0.26 tolerated(0.26) benign(0.376) TCGA-BR-8078-01 5 140795118 140795118 C T PCDHGA10 Silent p.N792N 0.23 TCGA-BR-8078-01 5 140857742 140857742 A - PCDHGC3 Frame_Shift_Del p.N689Ifs*10 0.30 TCGA-BR-8078-01 5 140953109 140953109 T G DIAPH1 Missense_Mutation p.K770Q 0.42 probably_damaging(0.986) TCGA-BR-8078-01 5 140958108 140958108 G A DIAPH1 Missense_Mutation p.R340C 0.27 unknown(0) TCGA-BR-8078-01 5 141044603 141044603 C T ARAP3 Missense_Mutation p.A896T 0.35 tolerated(1) benign(0.001) TCGA-BR-8078-01 5 145883505 145883506 GA - TCERG1 Frame_Shift_Del p.E892Afs*17 0.26 TCGA-BR-8078-01 5 148206391 148206391 C T ADRB2 5'UTR 0.23 TCGA-BR-8078-01 5 149449476 149449476 G A CSF1R Silent p.S490S 0.33 TCGA-BR-8078-01 5 150056491 150056491 C A MYOZ3 3'UTR 0.27 TCGA-BR-8078-01 5 150310338 150310338 A G ZNF300P1 RNA 0.60 TCGA-BR-8078-01 5 150911530 150911530 G A FAT2 Silent p.G3143G 0.39 TCGA-BR-8078-01 5 151783947 151783947 A G NMUR2 Splice_Site p.X242_splice 0.26 TCGA-BR-8078-01 5 152873616 152873616 A G GRIA1 Missense_Mutation p.T81A 0.27 deleterious(0.02) benign(0.212) TCGA-BR-8078-01 5 153760175 153760175 C T GALNT10 Missense_Mutation p.P308S 0.25 deleterious(0.02) benign(0.069) TCGA-BR-8078-01 5 154304058 154304058 T - GEMIN5 Frame_Shift_Del p.V451Wfs*26 0.29 TCGA-BR-8078-01 5 154394713 154394713 G A KIF4B Missense_Mutation p.A432T 0.32 tolerated(0.53) benign(0.003) TCGA-BR-8078-01 5 154396039 154396039 C T KIF4B Silent p.L874L 0.34 TCGA-BR-8078-01 5 157078494 157078494 C T SOX30 Missense_Mutation p.G198D 0.25 tolerated_low_confidence(0.05) possibly_damaging(0.521) TCGA-BR-8078-01 5 167674064 167674064 C T TENM2 Silent p.F2040F 0.31 TCGA-BR-8078-01 5 167929052 167929052 A G RARS Silent p.R333R 0.27 TCGA-BR-8078-01 5 176025652 176025652 G A GPRIN1 Missense_Mutation p.T395M 0.38 tolerated(0.31) benign(0.001) TCGA-BR-8078-01 5 177574760 177574760 T C RMND5B Missense_Mutation p.Y332H 0.38 deleterious(0) possibly_damaging(0.893) TCGA-BR-8078-01 5 177637177 177637194 CAGGGCTACGGCTACCAG - HNRNPAB In_Frame_Del p.Y282_G287del 0.12 TCGA-BR-8078-01 5 179318408 179318408 C T TBC1D9B Missense_Mutation p.A339T 0.30 tolerated(0.22) benign(0.329) TCGA-BR-8078-01 5 180048658 180048658 G A FLT4 Missense_Mutation p.T635M 0.30 deleterious(0) probably_damaging(0.91) TCGA-BR-8078-01 5 180058748 180058748 G - FLT4 Frame_Shift_Del p.P30Rfs*3 0.35 TCGA-BR-8078-01 5 180622403 180622403 C T TRIM7 Nonsense_Mutation p.W433* 0.27 TCGA-BR-8078-01 5 22078833 22078833 C T CDH12 5'UTR 0.28 TCGA-BR-8078-01 5 24511519 24511519 G A CDH10 Nonsense_Mutation p.R307* 0.42 TCGA-BR-8078-01 5 26902626 26902626 C A CDH9 Missense_Mutation p.Q404H 0.34 deleterious(0.03) possibly_damaging(0.694) TCGA-BR-8078-01 5 2749519 2749519 G A IRX2 Missense_Mutation p.T211M 0.35 tolerated(0.09) benign(0.333) TCGA-BR-8078-01 5 31526816 31526816 C T DROSHA Missense_Mutation p.R75Q 0.25 deleterious_low_confidence(0.02) benign(0.238) TCGA-BR-8078-01 5 31541435 31541435 T - C5orf22 Frame_Shift_Del p.L307* 0.27 TCGA-BR-8078-01 5 34043270 34043270 C T C1QTNF3 5'UTR 0.16 TCGA-BR-8078-01 5 34915031 34915031 C A RAD1 5'UTR 0.27 TCGA-BR-8078-01 5 35779342 35779343 - C SPEF2 Frame_Shift_Ins p.S1450Ifs*18 0.21 TCGA-BR-8078-01 5 37169238 37169238 T - C5orf42 Frame_Shift_Del p.E2297Kfs*11 0.19 TCGA-BR-8078-01 5 41850186 41850186 C T OXCT1 Silent p.S170S 0.27 TCGA-BR-8078-01 5 41853524 41853524 T A OXCT1 Silent p.P137P 0.30 TCGA-BR-8078-01 5 424011 424011 G A AHRR Silent p.T213T 0.26 TCGA-BR-8078-01 5 5306750 5306750 G A ADAMTS16 Missense_Mutation p.R1107H 0.28 deleterious(0.01) possibly_damaging(0.696) TCGA-BR-8078-01 5 59940657 59940657 G A DEPDC1B Silent p.D208D 0.48 TCGA-BR-8078-01 5 61648515 61648515 A - KIF2A Frame_Shift_Del p.K147Rfs*14 0.26 TCGA-BR-8078-01 5 63905019 63905019 C - RGS7BP Frame_Shift_Del p.L240Wfs*2 0.22 TCGA-BR-8078-01 5 640665 640665 C T CEP72 Silent p.H495H 0.33 TCGA-BR-8078-01 5 64595832 64595832 G A ADAMTS6 Silent p.D450D 0.29 TCGA-BR-8078-01 5 68665244 68665244 C - TAF9 Intron 0.40 TCGA-BR-8078-01 5 68715652 68715652 G A MARVELD2 Missense_Mutation p.R147Q 0.33 tolerated(0.39) benign(0.003) TCGA-BR-8078-01 5 71490660 71490660 G A MAP1B Missense_Mutation p.S493N 0.12 unknown(0) TCGA-BR-8078-01 5 74981154 74981154 C T POC5 Missense_Mutation p.A429T 0.28 tolerated(0.78) probably_damaging(0.982) TCGA-BR-8078-01 5 78427014 78427014 A - BHMT 3'UTR 0.18 TCGA-BR-8078-01 5 79028654 79028654 G A CMYA5 Missense_Mutation p.A1356T 0.19 benign(0.001) TCGA-BR-8078-01 5 79970915 79970916 AA - MSH3 Frame_Shift_Del p.K383Gfs*20 0.26 TCGA-BR-8078-01 5 896840 896840 C A TRIP13 Missense_Mutation p.P107T 0.34 deleterious(0.03) benign(0.313) TCGA-BR-8078-01 5 89979908 89979908 C T GPR98 Missense_Mutation p.T2057I 0.25 benign(0.052) TCGA-BR-8078-01 6 100009286 100009286 A G CCNC Missense_Mutation p.V84A 0.29 deleterious(0.02) benign(0.38) TCGA-BR-8078-01 6 100896393 100896393 G A SIM1 Silent p.R235R 0.19 TCGA-BR-8078-01 6 105233031 105233031 G T HACE1 Missense_Mutation p.P413H 0.24 tolerated(0.17) benign(0) TCGA-BR-8078-01 6 107956439 107956439 G - SOBP Frame_Shift_Del p.G799Afs*29 0.26 TCGA-BR-8078-01 6 108067996 108067996 C T SCML4 Silent p.S128S 0.33 TCGA-BR-8078-01 6 108985055 108985055 A G FOXO3 Missense_Mutation p.D340G 0.32 deleterious(0.03) benign(0.007) TCGA-BR-8078-01 6 109980432 109980434 TCT - AK9 In_Frame_Del p.E210del 0.34 TCGA-BR-8078-01 6 111213388 111213388 G A AMD1 Missense_Mutation p.R151H 0.32 tolerated(0.08) benign(0.01) TCGA-BR-8078-01 6 116441750 116441750 G - COL10A1 Frame_Shift_Del p.P510Lfs*17 0.18 TCGA-BR-8078-01 6 116951612 116951612 C - RSPH4A Frame_Shift_Del p.W607Gfs*40 0.27 TCGA-BR-8078-01 6 117086374 117086374 C T FAM162B Missense_Mutation p.D73N 0.21 deleterious(0) probably_damaging(1) TCGA-BR-8078-01 6 12122840 12122840 A G HIVEP1 Missense_Mutation p.K938E 0.21 deleterious(0) possibly_damaging(0.589) TCGA-BR-8078-01 6 124676492 124676492 A G NKAIN2 Missense_Mutation p.K91R 0.21 tolerated(0.33) benign(0.007) TCGA-BR-8078-01 6 127837736 127837736 G A SOGA3 Silent p.G8G 0.21 TCGA-BR-8078-01 6 130164743 130164743 T C TMEM244 Missense_Mutation p.H42R 0.31 tolerated(0.35) benign(0.051) TCGA-BR-8078-01 6 1313297 1313297 C - FOXQ1 Frame_Shift_Del p.Y122Tfs*19 0.39 TCGA-BR-8078-01 6 1313402 1313402 T C FOXQ1 Missense_Mutation p.F155L 0.23 deleterious(0) probably_damaging(0.969) TCGA-BR-8078-01 6 134312046 134312046 T - SLC2A12 3'UTR 0.64 TCGA-BR-8078-01 6 135239672 135239672 G A ALDH8A1 Missense_Mutation p.L449F 0.32 tolerated(0.24) probably_damaging(0.978) TCGA-BR-8078-01 6 137243721 137243721 C T SLC35D3 Missense_Mutation p.A52V 0.35 deleterious(0.02) possibly_damaging(0.848) TCGA-BR-8078-01 6 137815334 137815334 G A OLIG3 5'UTR 0.28 TCGA-BR-8078-01 6 139364070 139364070 T - ABRACL 3'UTR 0.28 TCGA-BR-8078-01 6 144262630 144262630 G - PLAGL1 Frame_Shift_Del p.I442Sfs*24 0.25 TCGA-BR-8078-01 6 146121412 146121412 T C FBXO30 Missense_Mutation p.N690D 0.39 tolerated(0.46) benign(0.003) TCGA-BR-8078-01 6 146720412 146720412 G A GRM1 Missense_Mutation p.C746Y 0.22 deleterious(0) probably_damaging(1) TCGA-BR-8078-01 6 151859310 151859310 A G CCDC170 Missense_Mutation p.Q106R 0.31 tolerated(0.12) benign(0.042) TCGA-BR-8078-01 6 15520515 15520515 T - JARID2 3'UTR 0.26 TCGA-BR-8078-01 6 159403612 159403612 G A RSPH3 Missense_Mutation p.R343W 0.42 tolerated(0.1) benign(0.168) TCGA-BR-8078-01 6 160230161 160230161 T - PNLDC1 Frame_Shift_Del p.F242Sfs*5 0.19 TCGA-BR-8078-01 6 161021956 161021956 A - LPA Frame_Shift_Del p.F1040Lfs*5 0.32 TCGA-BR-8078-01 6 16290717 16290717 T C GMPR Missense_Mutation p.L241P 0.31 deleterious(0) probably_damaging(1) TCGA-BR-8078-01 6 168325729 168325729 A - MLLT4 Frame_Shift_Del p.K1014Sfs*20 0.31 TCGA-BR-8078-01 6 170627293 170627293 C T FAM120B Missense_Mutation p.S272L 0.46 deleterious(0) benign(0.265) TCGA-BR-8078-01 6 18122226 18122226 A - NHLRC1 Frame_Shift_Del p.F204Lfs*28 0.26 TCGA-BR-8078-01 6 18222307 18222307 A - KDM1B 3'UTR 0.25 TCGA-BR-8078-01 6 20490696 20490697 - T E2F3 3'UTR 0.25 TCGA-BR-8078-01 6 24358032 24358032 G A KAAG1 Silent p.P55P 0.35 TCGA-BR-8078-01 6 24718988 24718988 T - C6orf62 5'UTR 0.24 TCGA-BR-8078-01 6 25600967 25600967 C T LRRC16A Missense_Mutation p.A1182V 0.27 tolerated_low_confidence(0.37) benign(0.003) TCGA-BR-8078-01 6 25851024 25851024 G T SLC17A3 Nonsense_Mutation p.S265* 0.29 TCGA-BR-8078-01 6 26108175 26108175 G A HIST1H1T Silent p.T49T 0.30 TCGA-BR-8078-01 6 26124113 26124113 G A HIST1H2BC Missense_Mutation p.S7F 0.34 deleterious_low_confidence(0.04) benign(0.075) TCGA-BR-8078-01 6 2623916 2623916 C - C6orf195 Frame_Shift_Del p.L48Yfs*63 0.09 TCGA-BR-8078-01 6 27782430 27782430 C A HIST1H2AJ Missense_Mutation p.R30L 0.38 deleterious_low_confidence(0) benign(0.037) TCGA-BR-8078-01 6 28097417 28097417 A G ZSCAN16 Missense_Mutation p.S246G 0.38 tolerated(0.09) benign(0) TCGA-BR-8078-01 6 29323493 29323494 TG - OR5V1 Frame_Shift_Del p.T160Sfs*15 0.27 TCGA-BR-8078-01 6 29342456 29342456 G A OR12D3 Silent p.S203S 0.39 TCGA-BR-8078-01 6 29342488 29342488 T C OR12D3 Missense_Mutation p.N193D 0.28 deleterious(0.01) probably_damaging(0.99) TCGA-BR-8078-01 6 29555792 29555793 CT - OR2H2 Frame_Shift_Del p.F26Rfs*83 0.30 TCGA-BR-8078-01 6 29574229 29574229 A G GABBR1 Silent p.I750I 0.29 TCGA-BR-8078-01 6 29691261 29691261 C G HLA-F Silent p.L7L 0.24 TCGA-BR-8078-01 6 29692211 29692211 C T HLA-F Missense_Mutation p.T199M 0.29 tolerated_low_confidence(0.07) probably_damaging(0.996) TCGA-BR-8078-01 6 30459139 30459139 C T HLA-E Missense_Mutation p.T279M 0.37 tolerated_low_confidence(0.07) probably_damaging(1) TCGA-BR-8078-01 6 31127312 31127312 C - TCF19 Frame_Shift_Del p.A25Pfs*72 0.29 TCGA-BR-8078-01 6 31170660 31170660 C A HCG27 3'UTR 0.35 TCGA-BR-8078-01 6 31239468 31239468 C T HLA-C Nonsense_Mutation p.W84* 0.31 TCGA-BR-8078-01 6 31323266 31323266 C T HLA-B Nonsense_Mutation p.W241* 0.31 TCGA-BR-8078-01 6 31474138 31474138 G A MICB Missense_Mutation p.A182T 0.43 tolerated(0.31) probably_damaging(0.985) TCGA-BR-8078-01 6 31504446 31504446 A - DDX39B Frame_Shift_Del p.F149Lfs*13 0.37 TCGA-BR-8078-01 6 31583049 31583049 G A AIF1 5'UTR 0.29 TCGA-BR-8078-01 6 31597337 31597338 - AGC PRRC2A In_Frame_Ins p.Q661dup 0.19 TCGA-BR-8078-01 6 31829063 31829063 A G NEU1 Missense_Mutation p.W173R 0.27 tolerated(0.6) benign(0.01) TCGA-BR-8078-01 6 31831489 31831489 C A SLC44A4 Missense_Mutation p.R683L 0.39 deleterious(0) possibly_damaging(0.669) TCGA-BR-8078-01 6 31852462 31852462 G - EHMT2 Frame_Shift_Del p.L855Cfs*36 0.20 TCGA-BR-8078-01 6 32015672 32015672 T C TNXB 5'Flank 0.23 TCGA-BR-8078-01 6 32015785 32015786 - A TNXB 5'Flank 0.20 TCGA-BR-8078-01 6 32097454 32097454 A C FKBPL Missense_Mutation p.I35S 0.25 tolerated_low_confidence(0.1) benign(0.054) TCGA-BR-8078-01 6 33132135 33132135 C T COL11A2 Missense_Mutation p.R1574H 0.24 unknown(0) TCGA-BR-8078-01 6 33164164 33164164 C - RXRB Intron 0.25 TCGA-BR-8078-01 6 33170084 33170084 A G SLC39A7 Missense_Mutation p.I227V 0.25 deleterious(0.05) possibly_damaging(0.781) TCGA-BR-8078-01 6 33282725 33282725 C T ZBTB22 3'UTR 0.34 TCGA-BR-8078-01 6 33289715 33289715 C - DAXX 5'UTR 0.21 TCGA-BR-8078-01 6 34505970 34505970 C - SPDEF 3'UTR 0.28 TCGA-BR-8078-01 6 35216468 35216468 A G SCUBE3 Missense_Mutation p.R990G 0.30 deleterious(0) probably_damaging(0.961) TCGA-BR-8078-01 6 36177640 36177640 T C BRPF3 Missense_Mutation p.L605P 0.38 deleterious(0) probably_damaging(1) TCGA-BR-8078-01 6 36652118 36652118 G - CDKN1A Frame_Shift_Del p.R83Gfs*65 0.28 TCGA-BR-8078-01 6 38897349 38897349 A G DNAH8 Silent p.R3510R 0.18 TCGA-BR-8078-01 6 4031881 4031881 A - PRPF4B Frame_Shift_Del p.K46Rfs*58 0.43 TCGA-BR-8078-01 6 41002503 41002503 G A UNC5CL Missense_Mutation p.S104L 0.41 tolerated(0.32) benign(0.011) TCGA-BR-8078-01 6 42231247 42231247 C T TRERF1 Silent p.P565P 0.26 TCGA-BR-8078-01 6 43184211 43184212 CT - CUL9 Frame_Shift_Del p.C2087Lfs*7 0.27 TCGA-BR-8078-01 6 43190535 43190535 G A CUL9 Missense_Mutation p.V2351M 0.08 deleterious(0) probably_damaging(0.994) TCGA-BR-8078-01 6 43401046 43401046 G A ABCC10 Missense_Mutation p.R443H 0.22 deleterious(0) probably_damaging(1) TCGA-BR-8078-01 6 46797282 46797282 A C MEP1A Missense_Mutation p.K373T 0.21 tolerated(0.55) benign(0.189) TCGA-BR-8078-01 6 46976905 46976905 C T GPR110 Missense_Mutation p.A756T 0.29 tolerated(0.07) benign(0.153) TCGA-BR-8078-01 6 51889477 51889477 C T PKHD1 Missense_Mutation p.A1711T 0.30 tolerated(0.1) benign(0.057) TCGA-BR-8078-01 6 51934317 51934317 A C PKHD1 Missense_Mutation p.V239G 0.19 deleterious(0) benign(0.06) TCGA-BR-8078-01 6 55128600 55128600 C T HCRTR2 Missense_Mutation p.R248C 0.32 deleterious(0) probably_damaging(0.934) TCGA-BR-8078-01 6 55922437 55922437 T C COL21A1 3'UTR 0.30 TCGA-BR-8078-01 6 56328498 56328498 A G DST Silent p.G4961G 0.06 TCGA-BR-8078-01 6 6002702 6002702 C T NRN1 Silent p.A28A 0.28 TCGA-BR-8078-01 6 62442601 62442601 C T KHDRBS2 Silent p.A293A 0.22 TCGA-BR-8078-01 6 62757868 62757868 C A KHDRBS2 Missense_Mutation p.R84I 0.33 deleterious(0) probably_damaging(0.985) TCGA-BR-8078-01 6 62995881 62995881 G A KHDRBS2 5'UTR 0.25 TCGA-BR-8078-01 6 66115078 66115078 T C EYS Missense_Mutation p.K349E 0.15 tolerated(0.09) benign(0.003) TCGA-BR-8078-01 6 71603915 71603915 C T B3GAT2 Missense_Mutation p.E218K 0.26 deleterious(0) probably_damaging(0.999) TCGA-BR-8078-01 6 71603921 71603921 G A B3GAT2 Missense_Mutation p.R216C 0.29 deleterious(0) probably_damaging(0.984) TCGA-BR-8078-01 6 7229265 7229265 C T RREB1 Silent p.S311S 0.29 TCGA-BR-8078-01 6 72892050 72892050 C T RIMS1 Silent p.R292R 0.36 TCGA-BR-8078-01 6 7727469 7727469 G A BMP6 Missense_Mutation p.R94Q 0.43 deleterious(0) possibly_damaging(0.847) TCGA-BR-8078-01 6 7727519 7727519 G C BMP6 Missense_Mutation p.E111Q 0.36 tolerated(0.64) benign(0) TCGA-BR-8078-01 6 79700597 79700597 G T PHIP Silent p.P769P 0.21 TCGA-BR-8078-01 6 80724229 80724229 G A TTK Missense_Mutation p.S345N 0.33 tolerated(0.12) benign(0.018) TCGA-BR-8078-01 6 83841932 83841932 G T DOPEY1 Missense_Mutation p.G885V 0.25 deleterious(0.02) benign(0.138) TCGA-BR-8078-01 6 83921763 83921763 C T ME1 Silent p.P533P 0.24 TCGA-BR-8078-01 6 85466490 85466490 C - TBX18 Frame_Shift_Del p.E233Rfs*4 0.25 TCGA-BR-8078-01 6 85472405 85472405 G - TBX18 Frame_Shift_Del p.K119Rfs*37 0.29 TCGA-BR-8078-01 6 88049878 88049878 C T SMIM8 Silent p.C60C 0.16 TCGA-BR-8078-01 6 90428705 90428705 C T MDN1 Silent p.P2034P 0.33 TCGA-BR-8078-01 6 96034417 96034417 T C MANEA Silent p.A34A 0.32 TCGA-BR-8078-01 7 100028980 100028980 G A MEPCE Missense_Mutation p.V447I 0.22 tolerated(0.05) probably_damaging(0.994) TCGA-BR-8078-01 7 100355909 100355909 T C ZAN Missense_Mutation p.C1132R 0.30 unknown(0) TCGA-BR-8078-01 7 100675194 100675194 C A MUC17 Missense_Mutation p.T166N 0.28 possibly_damaging(0.507) TCGA-BR-8078-01 7 100680858 100680858 C T MUC17 Missense_Mutation p.T2054M 0.30 unknown(0) TCGA-BR-8078-01 7 100731710 100731710 C G TRIM56 Missense_Mutation p.Q373E 0.24 tolerated(0.74) benign(0) TCGA-BR-8078-01 7 100803911 100803911 T C AP1S1 3'UTR 0.30 TCGA-BR-8078-01 7 100816741 100816741 G A NAT16 Missense_Mutation p.R125C 0.26 deleterious(0.02) benign(0.264) TCGA-BR-8078-01 7 102574474 102574474 C T LRRC17 Silent p.G38G 0.33 TCGA-BR-8078-01 7 102739025 102739025 A C ARMC10 3'UTR 0.13 TCGA-BR-8078-01 7 103183268 103183268 C T RELN Missense_Mutation p.C2194Y 0.32 deleterious(0) probably_damaging(0.999) TCGA-BR-8078-01 7 105182902 105182902 A - RINT1 Frame_Shift_Del p.N109Mfs*28 0.27 TCGA-BR-8078-01 7 107115558 107115558 T - GPR22 Frame_Shift_Del p.L353* 0.21 TCGA-BR-8078-01 7 107253787 107253787 G T BCAP29 Missense_Mutation p.K200N 0.27 deleterious(0.01) probably_damaging(0.969) TCGA-BR-8078-01 7 107323940 107323940 A - SLC26A4 Frame_Shift_Del p.N322Ifs*22 0.23 TCGA-BR-8078-01 7 108112874 108112874 C T PNPLA8 Missense_Mutation p.E774K 0.35 tolerated(0.08) benign(0.059) TCGA-BR-8078-01 7 111368509 111368509 G A DOCK4 Missense_Mutation p.R1908W 0.36 deleterious_low_confidence(0.02) probably_damaging(0.965) TCGA-BR-8078-01 7 111368582 111368582 G A DOCK4 Silent p.P1883P 0.36 TCGA-BR-8078-01 7 111409634 111409634 C T DOCK4 Missense_Mutation p.R1251H 0.08 deleterious(0.01) benign(0.067) TCGA-BR-8078-01 7 111409726 111409726 T C DOCK4 Silent p.A1220A 0.36 TCGA-BR-8078-01 7 111580273 111580273 T - DOCK4 Frame_Shift_Del p.K290Rfs*23 0.24 TCGA-BR-8078-01 7 11464332 11464332 C T THSD7A Missense_Mutation p.R1125Q 0.35 deleterious(0) probably_damaging(0.998) TCGA-BR-8078-01 7 117067503 117067503 G A ASZ1 Silent p.S4S 0.48 TCGA-BR-8078-01 7 121650445 121650445 A C PTPRZ1 Missense_Mutation p.S449R 0.35 deleterious(0.05) benign(0.004) TCGA-BR-8078-01 7 122194676 122194676 T - CADPS2 Frame_Shift_Del p.N468Ifs*7 0.28 TCGA-BR-8078-01 7 12263867 12263867 G T TMEM106B Missense_Mutation p.M99I 0.27 tolerated(0.17) benign(0.003) TCGA-BR-8078-01 7 122809288 122809288 T C SLC13A1 Missense_Mutation p.Q156R 0.43 deleterious(0.01) probably_damaging(0.992) TCGA-BR-8078-01 7 122839969 122839969 C T SLC13A1 Missense_Mutation p.R11H 0.13 deleterious(0) probably_damaging(0.995) TCGA-BR-8078-01 7 1273302 1273302 C T UNCX Missense_Mutation p.R141C 0.17 deleterious(0) probably_damaging(0.999) TCGA-BR-8078-01 7 128475415 128475415 A G FLNC Missense_Mutation p.I130V 0.39 deleterious(0) probably_damaging(0.973) TCGA-BR-8078-01 7 128843389 128843389 T C SMO Missense_Mutation p.F166L 0.38 deleterious(0) probably_damaging(0.949) TCGA-BR-8078-01 7 129091546 129091546 C T STRIP2 Missense_Mutation p.R123W 0.37 deleterious(0.04) possibly_damaging(0.773) TCGA-BR-8078-01 7 129764312 129764312 T C KLHDC10 Silent p.H267H 0.31 TCGA-BR-8078-01 7 133314872 133314872 G A EXOC4 Missense_Mutation p.V498I 0.28 tolerated(0.35) benign(0.001) TCGA-BR-8078-01 7 134222385 134222385 C T AKR1B10 Missense_Mutation p.A238V 0.33 deleterious(0) probably_damaging(0.942) TCGA-BR-8078-01 7 134851448 134851448 C - C7orf49 Frame_Shift_Del p.G130Vfs*19 0.24 TCGA-BR-8078-01 7 136938212 136938212 G A PTN Silent p.G96G 0.09 TCGA-BR-8078-01 7 138602550 138602550 G A KIAA1549 Missense_Mutation p.R608C 0.20 deleterious(0.03) benign(0.001) TCGA-BR-8078-01 7 139168108 139168108 G T KLRG2 Missense_Mutation p.P94Q 0.50 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BR-8078-01 7 140110830 140110830 A C RAB19 Intron 0.32 TCGA-BR-8078-01 7 141776043 141776043 T G MGAM Intron 0.70 TCGA-BR-8078-01 7 141800654 141800654 G - MGAM Frame_Shift_Del p.G1748Afs*35 0.34 TCGA-BR-8078-01 7 142021314 142021314 C - TRBV5-1 Frame_Shift_Del p.S98Rfs*? 0.26 TCGA-BR-8078-01 7 142045383 142045383 C T TRBV4-2 Silent p.C7C 0.16 TCGA-BR-8078-01 7 142561866 142561866 C T EPHB6 Missense_Mutation p.A103V 0.34 tolerated(1) benign(0.027) TCGA-BR-8078-01 7 142566026 142566026 C T EPHB6 Missense_Mutation p.S649F 0.27 tolerated(0.7) probably_damaging(0.933) TCGA-BR-8078-01 7 143633262 143633262 T C OR2F2 Missense_Mutation p.S313P 0.32 tolerated(0.09) benign(0.027) TCGA-BR-8078-01 7 144068398 144068398 C T ARHGEF5 Nonsense_Mutation p.R1226* 0.12 TCGA-BR-8078-01 7 150034532 150034532 C T LRRC61 Silent p.T194T 0.43 TCGA-BR-8078-01 7 150174600 150174600 A T GIMAP8 Missense_Mutation p.D577V 0.33 deleterious(0.03) benign(0.446) TCGA-BR-8078-01 7 150707211 150707211 C - NOS3 Frame_Shift_Del p.G843Afs*115 0.36 TCGA-BR-8078-01 7 150883953 150883953 T C ASB10 Missense_Mutation p.T89A 0.27 tolerated(0.08) benign(0.068) TCGA-BR-8078-01 7 150911168 150911168 T G ABCF2 Missense_Mutation p.Q615P 0.40 deleterious(0.01) benign(0.087) TCGA-BR-8078-01 7 151810418 151810418 G A GALNT11 Missense_Mutation p.E390K 0.32 tolerated(0.4) benign(0.075) TCGA-BR-8078-01 7 152027709 152027709 A G KMT2C Silent p.S122S 0.05 TCGA-BR-8078-01 7 1535865 1535865 G A INTS1 Silent p.A546A 0.28 TCGA-BR-8078-01 7 155604760 155604760 G A SHH Silent p.C19C 0.40 TCGA-BR-8078-01 7 157178406 157178407 - T DNAJB6 Intron 0.29 TCGA-BR-8078-01 7 20449502 20449502 A G ITGB8 Missense_Mutation p.K731R 0.31 tolerated(0.63) benign(0.017) TCGA-BR-8078-01 7 20826480 20826480 T - SP8 5'UTR 0.41 TCGA-BR-8078-01 7 21583118 21583118 C T DNAH11 Silent p.D85D 0.40 TCGA-BR-8078-01 7 21631141 21631141 A - DNAH11 Frame_Shift_Del p.K873Nfs*4 0.29 TCGA-BR-8078-01 7 2289590 2289590 A G NUDT1 Missense_Mutation p.H107R 0.31 deleterious(0.04) possibly_damaging(0.696) TCGA-BR-8078-01 7 23164891 23164891 C A KLHL7 Intron 0.19 TCGA-BR-8078-01 7 2473447 2473447 G A CHST12 Silent p.Q391Q 0.28 TCGA-BR-8078-01 7 27224538 27224538 G - HOXA11 Frame_Shift_Del p.R76Afs*219 0.26 TCGA-BR-8078-01 7 28848864 28848864 G - CREB5 Frame_Shift_Del p.R365Afs*6 0.26 TCGA-BR-8078-01 7 30638425 30638425 G A GARS Missense_Mutation p.R79Q 0.38 deleterious(0.02) probably_damaging(0.991) TCGA-BR-8078-01 7 36455378 36455378 T C ANLN Silent p.C469C 0.04 TCGA-BR-8078-01 7 37298811 37298811 T G ELMO1 Missense_Mutation p.T130P 0.35 tolerated(0.07) probably_damaging(0.93) TCGA-BR-8078-01 7 41739849 41739849 C T INHBA Missense_Mutation p.A42T 0.28 tolerated(0.44) benign(0.004) TCGA-BR-8078-01 7 42003846 42003846 A - GLI3 3'UTR 0.35 TCGA-BR-8078-01 7 42004496 42004496 C T GLI3 Missense_Mutation p.S1392N 0.29 tolerated_low_confidence(0.78) benign(0.001) TCGA-BR-8078-01 7 42949407 42949407 C T C7orf25 Missense_Mutation p.G423R 0.34 deleterious(0) probably_damaging(0.99) TCGA-BR-8078-01 7 44091460 44091460 C T DBNL Silent p.L57L 0.30 TCGA-BR-8078-01 7 44579933 44579933 A G NPC1L1 Silent p.S21S 0.25 TCGA-BR-8078-01 7 45115439 45115439 G A CCM2 Missense_Mutation p.G394D 0.22 deleterious(0.04) probably_damaging(1) TCGA-BR-8078-01 7 45743274 45743274 G A ADCY1 Missense_Mutation p.E883K 0.28 deleterious(0) probably_damaging(0.985) TCGA-BR-8078-01 7 5644943 5644943 G A FSCN1 Silent p.A440A 0.44 TCGA-BR-8078-01 7 6063222 6063222 T G AIMP2 Missense_Mutation p.I288S 0.33 tolerated(0.33) benign(0.001) TCGA-BR-8078-01 7 64639757 64639757 A G INTS4L1 RNA 0.11 TCGA-BR-8078-01 7 65610438 65610438 A G CRCP Missense_Mutation p.K83R 0.27 deleterious(0) possibly_damaging(0.838) TCGA-BR-8078-01 7 6777215 6777215 C T PMS2CL RNA 0.25 TCGA-BR-8078-01 7 73462849 73462849 A G ELN Silent p.A254A 0.26 TCGA-BR-8078-01 7 73790832 73790832 C T CLIP2 Missense_Mutation p.R701W 0.26 deleterious(0) benign(0.339) TCGA-BR-8078-01 7 75614451 75614451 C - POR Frame_Shift_Del p.I444Sfs*101 0.23 TCGA-BR-8078-01 7 77569580 77569581 - T PHTF2 Frame_Shift_Ins p.L536Ffs*10 0.31 TCGA-BR-8078-01 7 82476473 82476473 G C PCLO Missense_Mutation p.A4582G 0.27 unknown(0) TCGA-BR-8078-01 7 82546109 82546111 CTC - PCLO In_Frame_Del p.E3731del 0.31 TCGA-BR-8078-01 7 87564383 87564383 G A ADAM22 Missense_Mutation p.R43H 0.18 deleterious_low_confidence(0) possibly_damaging(0.714) TCGA-BR-8078-01 7 90894984 90894984 G - FZD1 Frame_Shift_Del p.G265Afs*143 0.37 TCGA-BR-8078-01 7 91651608 91651608 A - AKAP9 Frame_Shift_Del p.E1300Rfs*12 0.20 TCGA-BR-8078-01 7 91743136 91743137 - C CYP51A1 Frame_Shift_Ins p.E458Gfs*9 0.19 TCGA-BR-8078-01 7 92146640 92146640 C T PEX1 Missense_Mutation p.A397T 0.25 tolerated(0.24) benign(0.003) TCGA-BR-8078-01 7 97362035 97362035 C T TAC1 Silent p.S37S 0.25 TCGA-BR-8078-01 7 97488171 97488171 A - ASNS Frame_Shift_Del p.L257Yfs*15 0.12 TCGA-BR-8078-01 7 99227411 99227411 G A ZSCAN25 Missense_Mutation p.S468N 0.43 tolerated(0.22) benign(0.337) TCGA-BR-8078-01 7 99564501 99564501 C - AZGP1 3'UTR 0.26 TCGA-BR-8078-01 7 99771554 99771554 C - GPC2 Frame_Shift_Del p.V266Sfs*36 0.25 TCGA-BR-8078-01 8 100654474 100654474 A - VPS13B Frame_Shift_Del p.I1913* 0.25 TCGA-BR-8078-01 8 105235897 105235897 G - RIMS2 Intron 0.13 TCGA-BR-8078-01 8 10755763 10755763 G A XKR6 Missense_Mutation p.T542M 0.43 deleterious(0.01) probably_damaging(0.962) TCGA-BR-8078-01 8 109796600 109796600 C - TMEM74 Frame_Shift_Del p.G243Afs*8 0.20 TCGA-BR-8078-01 8 11188646 11188646 C T SLC35G5 Missense_Mutation p.P11S 0.25 tolerated(0.17) benign(0.006) TCGA-BR-8078-01 8 118834730 118834730 T A EXT1 Missense_Mutation p.D464V 0.14 deleterious(0.02) benign(0.215) TCGA-BR-8078-01 8 120608105 120608105 C T ENPP2 Silent p.A370A 0.23 TCGA-BR-8078-01 8 125463342 125463342 G A TRMT12 Silent p.A58A 0.17 TCGA-BR-8078-01 8 125535186 125535186 T - TATDN1 Frame_Shift_Del p.K27Sfs*9 0.23 TCGA-BR-8078-01 8 12957167 12957167 G T DLC1 Missense_Mutation p.D893E 0.17 tolerated(0.17) benign(0.012) TCGA-BR-8078-01 8 12957997 12957997 G - DLC1 Frame_Shift_Del p.R617Gfs*37 0.23 TCGA-BR-8078-01 8 131104216 131104216 T C ASAP1 Intron 0.22 TCGA-BR-8078-01 8 131226887 131226887 A - ASAP1 Frame_Shift_Del p.L107* 0.20 TCGA-BR-8078-01 8 132051844 132051844 C T ADCY8 Missense_Mutation p.G246S 0.19 tolerated(0.24) possibly_damaging(0.724) TCGA-BR-8078-01 8 134232956 134232957 - C WISP1 Frame_Shift_Ins p.R164Afs*18 0.19 TCGA-BR-8078-01 8 139153485 139153485 G T FAM135B Missense_Mutation p.P1249H 0.30 deleterious(0) probably_damaging(0.999) TCGA-BR-8078-01 8 140630372 140630372 G T KCNK9 3'UTR 0.38 TCGA-BR-8078-01 8 141461467 141461467 G A TRAPPC9 Silent p.S100S 0.19 TCGA-BR-8078-01 8 143427223 143427223 A G TSNARE1 Missense_Mutation p.I40T 0.24 deleterious_low_confidence(0) possibly_damaging(0.534) TCGA-BR-8078-01 8 143562668 143562668 C - BAI1 Frame_Shift_Del p.T630Pfs*15 0.24 TCGA-BR-8078-01 8 143856744 143856744 G A LYNX1 Intron 0.20 TCGA-BR-8078-01 8 143958275 143958275 G A CYP11B1 Missense_Mutation p.R208W 0.11 deleterious(0) probably_damaging(0.997) TCGA-BR-8078-01 8 144658934 144658934 C T NAPRT1 Missense_Mutation p.A255T 0.18 tolerated(0.57) benign(0.001) TCGA-BR-8078-01 8 144672247 144672247 C A EEF1D Missense_Mutation p.R2M 0.11 deleterious(0) probably_damaging(0.999) TCGA-BR-8078-01 8 144874959 144874959 G A SCRIB Missense_Mutation p.R1366C 0.14 probably_damaging(0.991) TCGA-BR-8078-01 8 144887175 144887175 C T SCRIB Missense_Mutation p.V894I 0.36 benign(0.003) TCGA-BR-8078-01 8 144892860 144892860 T A SCRIB Missense_Mutation p.K467M 0.21 possibly_damaging(0.889) TCGA-BR-8078-01 8 144996946 144996946 C T PLEC Missense_Mutation p.R2521H 0.33 benign(0.233) TCGA-BR-8078-01 8 145058891 145058891 C T PARP10 Missense_Mutation p.A427T 0.20 tolerated(0.57) benign(0.011) TCGA-BR-8078-01 8 145109542 145109542 G - OPLAH Frame_Shift_Del p.H870Tfs*28 0.21 TCGA-BR-8078-01 8 145112163 145112163 G T OPLAH Missense_Mutation p.H495N 0.38 deleterious(0) probably_damaging(0.995) TCGA-BR-8078-01 8 145512821 145512821 G A BOP1 Silent p.D88D 0.19 TCGA-BR-8078-01 8 145540281 145540281 G A DGAT1 Missense_Mutation p.A468V 0.26 deleterious(0.03) benign(0.35) TCGA-BR-8078-01 8 145736562 145736562 G A MFSD3 3'UTR 0.24 TCGA-BR-8078-01 8 145806354 145806354 C T ARHGAP39 Missense_Mutation p.V130I 0.19 tolerated(0.38) benign(0.015) TCGA-BR-8078-01 8 1514032 1514032 G A DLGAP2 Missense_Mutation p.G392R 0.20 tolerated(0.49) benign(0.061) TCGA-BR-8078-01 8 17924735 17924735 G T ASAH1 Missense_Mutation p.P142T 0.18 deleterious(0.03) probably_damaging(0.994) TCGA-BR-8078-01 8 18662050 18662050 G A PSD3 Missense_Mutation p.T631M 0.28 deleterious(0.01) probably_damaging(0.989) TCGA-BR-8078-01 8 19811840 19811840 G A LPL Missense_Mutation p.V251M 0.19 tolerated(0.15) benign(0.017) TCGA-BR-8078-01 8 21996234 21996234 C T REEP4 Missense_Mutation p.R209Q 0.27 tolerated(0.72) benign(0.001) TCGA-BR-8078-01 8 22069141 22069141 T G BMP1 Missense_Mutation p.V954G 0.25 deleterious(0) benign(0.285) TCGA-BR-8078-01 8 24813205 24813205 G A CTD-2168K21.2 5'Flank 0.17 TCGA-BR-8078-01 8 25267621 25267621 C T DOCK5 Missense_Mutation p.P1804L 0.19 tolerated(0.27) benign(0.012) TCGA-BR-8078-01 8 25897577 25897577 C T EBF2 Missense_Mutation p.C150Y 0.16 deleterious(0.01) probably_damaging(0.98) TCGA-BR-8078-01 8 26513310 26513310 T G DPYSL2 3'UTR 0.29 TCGA-BR-8078-01 8 27593677 27593677 T C CCDC25 3'UTR 0.19 TCGA-BR-8078-01 8 2813120 2813120 C T CSMD1 Missense_Mutation p.V3329M 0.25 benign(0.444) TCGA-BR-8078-01 8 28378245 28378245 C T FZD3 Missense_Mutation p.R94C 0.20 deleterious(0.03) probably_damaging(0.943) TCGA-BR-8078-01 8 30969140 30969140 G A WRN Missense_Mutation p.V700I 0.26 tolerated(0.24) benign(0.113) TCGA-BR-8078-01 8 3141814 3141814 C A CSMD1 Missense_Mutation p.W1335C 0.12 probably_damaging(0.999) TCGA-BR-8078-01 8 31498154 31498154 C T NRG1 Silent p.R71R 0.14 TCGA-BR-8078-01 8 31498171 31498171 G A NRG1 Missense_Mutation p.R77Q 0.24 deleterious(0.03) benign(0.342) TCGA-BR-8078-01 8 35542123 35542123 A T UNC5D Missense_Mutation p.T259S 0.20 tolerated(0.2) benign(0.062) TCGA-BR-8078-01 8 41469749 41469749 C T AGPAT6 Missense_Mutation p.P251L 0.22 deleterious(0) probably_damaging(0.999) TCGA-BR-8078-01 8 42026641 42026641 A - AP3M2 3'UTR 0.36 TCGA-BR-8078-01 8 42178300 42178300 C A IKBKB Silent p.T542T 0.15 TCGA-BR-8078-01 8 42924786 42924786 A - FNTA Frame_Shift_Del p.N165Tfs*11 0.18 TCGA-BR-8078-01 8 55534032 55534032 C T RP1 Missense_Mutation p.A169V 0.20 tolerated(0.68) benign(0.004) TCGA-BR-8078-01 8 55539129 55539129 C T RP1 Missense_Mutation p.A896V 0.23 tolerated(0.09) benign(0.072) TCGA-BR-8078-01 8 59059060 59059060 C T FAM110B Missense_Mutation p.R91C 0.31 deleterious(0.01) benign(0.039) TCGA-BR-8078-01 8 59059079 59059079 C T FAM110B Missense_Mutation p.T97M 0.27 tolerated(0.07) possibly_damaging(0.828) TCGA-BR-8078-01 8 59492251 59492251 A - SDCBP Frame_Shift_Del p.I218* 0.17 TCGA-BR-8078-01 8 61533311 61533311 G - RAB2A Frame_Shift_Del p.G209Afs*11 0.18 TCGA-BR-8078-01 8 61777851 61777851 G A CHD7 Missense_Mutation p.A2785T 0.22 benign(0.072) TCGA-BR-8078-01 8 623865 623865 T - ERICH1 Frame_Shift_Del p.R163Gfs*3 0.17 TCGA-BR-8078-01 8 67971573 67971573 T A COPS5 Missense_Mutation p.K84M 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-BR-8078-01 8 67976722 67976722 G A CSPP1 Missense_Mutation p.R30H 0.11 tolerated_low_confidence(0.25) benign(0) TCGA-BR-8078-01 8 68989642 68989642 G A PREX2 Missense_Mutation p.R527H 0.22 deleterious(0.02) possibly_damaging(0.883) TCGA-BR-8078-01 8 69012063 69012063 A G PREX2 Missense_Mutation p.I900M 0.20 deleterious(0) possibly_damaging(0.523) TCGA-BR-8078-01 8 72211944 72211944 T C EYA1 Missense_Mutation p.T190A 0.15 tolerated(0.18) benign(0.126) TCGA-BR-8078-01 8 72958792 72958792 T - TRPA1 Frame_Shift_Del p.T673Hfs*23 0.36 TCGA-BR-8078-01 8 77776234 77776234 C T ZFHX4 Silent p.F3428F 0.26 TCGA-BR-8078-01 8 77776768 77776768 C A ZFHX4 Missense_Mutation p.F3606L 0.34 probably_damaging(0.961) TCGA-BR-8078-01 8 82670501 82670501 T C CHMP4C Missense_Mutation p.M203T 0.29 tolerated(0.59) benign(0) TCGA-BR-8078-01 8 87242090 87242090 C A SLC7A13 Missense_Mutation p.L139F 0.24 deleterious(0) probably_damaging(0.988) TCGA-BR-8078-01 8 87487103 87487105 AGC - RMDN1 In_Frame_Del p.A280del 0.21 TCGA-BR-8078-01 8 87645015 87645015 A - CNGB3 Frame_Shift_Del p.S429Lfs*9 0.27 TCGA-BR-8078-01 8 93003866 93003866 C T RUNX1T1 Splice_Site p.X342_splice 0.21 TCGA-BR-8078-01 8 95272705 95272705 G T GEM Silent p.R9R 0.12 TCGA-BR-8078-01 8 9623842 9623842 A - TNKS Frame_Shift_Del p.N1217Tfs*38 0.19 TCGA-BR-8078-01 8 97157603 97157603 C T GDF6 Missense_Mutation p.V186M 0.29 tolerated(0.05) benign(0.066) TCGA-BR-8078-01 8 97269398 97269398 G A MTERFD1 Intron 0.20 TCGA-BR-8078-01 8 98289483 98289483 G A TSPYL5 Missense_Mutation p.A197V 0.31 tolerated(0.2) benign(0.013) TCGA-BR-8078-01 8 98657012 98657012 C T MTDH Missense_Mutation p.A93V 0.44 tolerated(0.21) benign(0.001) TCGA-BR-8078-01 9 102626287 102626287 T - NR4A3 3'UTR 0.25 TCGA-BR-8078-01 9 103090222 103090222 G T TEX10 Missense_Mutation p.R550S 0.28 tolerated(0.07) possibly_damaging(0.801) TCGA-BR-8078-01 9 106862422 106862422 A - SMC2 Frame_Shift_Del p.I179* 0.32 TCGA-BR-8078-01 9 107513348 107513348 A - NIPSNAP3A Frame_Shift_Del p.N59Tfs*17 0.24 TCGA-BR-8078-01 9 107546689 107546689 T C ABCA1 Silent p.K2231K 0.42 TCGA-BR-8078-01 9 113243565 113243565 G A SVEP1 Silent p.G774G 0.16 TCGA-BR-8078-01 9 114090466 114090466 A G OR2K2 Missense_Mutation p.V83A 0.33 tolerated(0.29) benign(0.01) TCGA-BR-8078-01 9 114359602 114359602 T - PTGR1 Frame_Shift_Del p.N34Mfs*17 0.19 TCGA-BR-8078-01 9 115421607 115421607 G A KIAA1958 Missense_Mutation p.G470D 0.27 deleterious(0.01) benign(0.082) TCGA-BR-8078-01 9 115421907 115421907 G T KIAA1958 Missense_Mutation p.R570L 0.26 tolerated(0.15) benign(0.167) TCGA-BR-8078-01 9 115652493 115652493 T C SLC46A2 Missense_Mutation p.M157V 0.39 deleterious(0.04) benign(0.301) TCGA-BR-8078-01 9 116171195 116171195 T - POLE3 Frame_Shift_Del p.T114Qfs*32 0.35 TCGA-BR-8078-01 9 117050984 117050984 C T COL27A1 Silent p.G1349G 0.26 TCGA-BR-8078-01 9 117071541 117071541 T C COL27A1 Missense_Mutation p.V1740A 0.33 unknown(0) TCGA-BR-8078-01 9 117266881 117266881 C T DFNB31 Silent p.A67A 0.18 TCGA-BR-8078-01 9 123367553 123367553 G A MEGF9 Missense_Mutation p.S575L 0.32 deleterious(0) probably_damaging(0.997) TCGA-BR-8078-01 9 125145862 125145862 G A PTGS1 Silent p.P279P 0.35 TCGA-BR-8078-01 9 125861042 125861042 A - RABGAP1 Frame_Shift_Del p.N930Tfs*15 0.31 TCGA-BR-8078-01 9 126319868 126319868 T - DENND1A Frame_Shift_Del p.N325Tfs*3 0.24 TCGA-BR-8078-01 9 126783458 126783458 C T LHX2 Missense_Mutation p.R270C 0.25 deleterious(0) probably_damaging(0.999) TCGA-BR-8078-01 9 128088865 128088865 G A GAPVD1 Missense_Mutation p.A677T 0.35 tolerated(0.22) possibly_damaging(0.574) TCGA-BR-8078-01 9 130289474 130289474 G A FAM129B Missense_Mutation p.A105V 0.45 tolerated(0.34) benign(0.001) TCGA-BR-8078-01 9 131851261 131851261 G A DOLPP1 Missense_Mutation p.R231H 0.37 deleterious(0) probably_damaging(0.999) TCGA-BR-8078-01 9 132510954 132510954 G - PTGES Frame_Shift_Del p.D64Tfs*65 0.19 TCGA-BR-8078-01 9 133760422 133760422 G A ABL1 Silent p.S934S 0.12 TCGA-BR-8078-01 9 134354775 134354775 G A PRRC2B Missense_Mutation p.S1632N 0.29 tolerated(0.08) benign(0.011) TCGA-BR-8078-01 9 134381551 134381553 TCT - POMT1 In_Frame_Del p.F60del 0.18 TCGA-BR-8078-01 9 135977154 135977154 G T RALGDS Intron 0.47 TCGA-BR-8078-01 9 136517397 136517397 G A DBH Silent p.S455S 0.29 TCGA-BR-8078-01 9 138376419 138376419 G A PPP1R26 Silent p.P21P 0.28 TCGA-BR-8078-01 9 138670667 138670667 C T KCNT1 Missense_Mutation p.R910W 0.33 deleterious(0) probably_damaging(0.995) TCGA-BR-8078-01 9 139091567 139091567 G A LHX3 Silent p.S142S 0.37 TCGA-BR-8078-01 9 139391271 139391271 T C NOTCH1 Missense_Mutation p.Q2307R 0.24 tolerated(0.78) benign(0.13) TCGA-BR-8078-01 9 139910575 139910575 G A ABCA2 Silent p.Y1052Y 0.07 TCGA-BR-8078-01 9 140174064 140174064 C T TOR4A Missense_Mutation p.T308M 0.36 deleterious(0) probably_damaging(0.972) TCGA-BR-8078-01 9 140732961 140732961 C - EHMT1 3'Flank 0.28 TCGA-BR-8078-01 9 15468955 15468955 T - PSIP1 Frame_Shift_Del p.I403Yfs*9 0.29 TCGA-BR-8078-01 9 20988333 20988333 G A FOCAD Missense_Mutation p.V1637I 0.37 deleterious(0.05) probably_damaging(0.993) TCGA-BR-8078-01 9 33675365 33675365 A - PTENP1 RNA 0.31 TCGA-BR-8078-01 9 34242049 34242049 C A UBAP1 Silent p.S406S 0.27 TCGA-BR-8078-01 9 34256536 34256537 CA - KIF24 Frame_Shift_Del p.V1023Efs*12 0.26 TCGA-BR-8078-01 9 34521676 34521676 G T ENHO Silent p.S6S 0.22 TCGA-BR-8078-01 9 35043650 35043650 C - C9orf131 Frame_Shift_Del p.C344Afs*49 0.26 TCGA-BR-8078-01 9 35560416 35560416 C T RUSC2 Missense_Mutation p.A1260V 0.35 tolerated(0.24) benign(0.103) TCGA-BR-8078-01 9 36846850 36846850 C T PAX5 Silent p.P363P 0.24 TCGA-BR-8078-01 9 37516069 37516069 C T FBXO10 Missense_Mutation p.R843Q 0.17 deleterious(0) probably_damaging(0.997) TCGA-BR-8078-01 9 37541216 37541216 A C FBXO10 Missense_Mutation p.F184V 0.33 deleterious(0.01) probably_damaging(0.956) TCGA-BR-8078-01 9 37888580 37888580 T - SLC25A51 5'UTR 0.22 TCGA-BR-8078-01 9 43626531 43626531 C A SPATA31A6 Missense_Mutation p.R719M 0.21 deleterious(0) benign(0.012) TCGA-BR-8078-01 9 4585465 4585465 C T SLC1A1 Silent p.N494N 0.32 TCGA-BR-8078-01 9 5801291 5801292 - T ERMP1 Frame_Shift_Ins p.T651Nfs*25 0.23 TCGA-BR-8078-01 9 70993145 70993145 A G PGM5 Missense_Mutation p.I98V 0.15 deleterious(0.01) possibly_damaging(0.573) TCGA-BR-8078-01 9 72131694 72131694 C T APBA1 Missense_Mutation p.A145T 0.54 tolerated_low_confidence(0.69) benign(0.001) TCGA-BR-8078-01 9 73002588 73002588 C T KLF9 3'UTR 0.33 TCGA-BR-8078-01 9 744580 744580 C A KANK1 Silent p.A1329A 0.22 TCGA-BR-8078-01 9 75526891 75526891 G A ALDH1A1 Missense_Mutation p.R395C 0.40 deleterious(0.01) benign(0.102) TCGA-BR-8078-01 9 77614678 77614678 A - C9orf41 Frame_Shift_Del p.F233Lfs*59 0.23 TCGA-BR-8078-01 9 79635623 79635623 G A FOXB2 Silent p.L351L 0.29 TCGA-BR-8078-01 9 79836274 79836274 T C VPS13A Splice_Site p.X387_splice 0.15 TCGA-BR-8078-01 9 87285579 87285579 G A NTRK2 5'UTR 0.22 TCGA-BR-8078-01 9 88272486 88272486 C T AGTPBP1 Missense_Mutation p.R258H 0.10 tolerated(0.2) benign(0.139) TCGA-BR-8078-01 9 90313686 90313686 G A DAPK1 Silent p.S909S 0.37 TCGA-BR-8078-01 9 91617139 91617139 A G S1PR3 Missense_Mutation p.S342G 0.25 tolerated(0.09) possibly_damaging(0.601) TCGA-BR-8078-01 9 91661763 91661763 G A SHC3 Missense_Mutation p.A370V 0.40 tolerated(0.11) benign(0.003) TCGA-BR-8078-01 9 92017805 92017805 A G SEMA4D Missense_Mutation p.I78T 0.28 deleterious(0) possibly_damaging(0.809) TCGA-BR-8078-01 9 93624564 93624564 G A SYK Missense_Mutation p.D219N 0.26 tolerated(0.17) benign(0.029) TCGA-BR-8078-01 9 95646207 95646207 G A RP11-526D8.7 Intron 0.29 TCGA-BR-8078-01 9 99083473 99083474 - C SLC35D2 3'UTR 0.35 TCGA-BR-8078-01 9 991086 991086 G A DMRT3 3'UTR 0.36 TCGA-BR-8078-01 X 100169733 100169733 A G XKRX Missense_Mutation p.V315A 0.30 deleterious(0.01) benign(0.187) TCGA-BR-8078-01 X 100613619 100613619 A G BTK Silent p.F320F 0.30 TCGA-BR-8078-01 X 100809163 100809163 T - ARMCX1 Frame_Shift_Del p.F419Sfs*16 0.22 TCGA-BR-8078-01 X 101818963 101818963 C T NXF4 RNA 0.22 TCGA-BR-8078-01 X 101971768 101971768 T - GPRASP2 Frame_Shift_Del p.L659Wfs*4 0.25 TCGA-BR-8078-01 X 102005119 102005119 G A BHLHB9 Missense_Mutation p.R399H 0.30 tolerated(0.22) benign(0.025) TCGA-BR-8078-01 X 103220212 103220212 T - TMSB15B 3'UTR 0.19 TCGA-BR-8078-01 X 105197095 105197095 G T NRK Missense_Mutation p.R1529M 0.25 deleterious(0.05) benign(0.005) TCGA-BR-8078-01 X 107224610 107224610 G T TEX13B Silent p.V213V 0.30 TCGA-BR-8078-01 X 110654094 110654094 A - DCX Frame_Shift_Del p.C37Vfs*40 0.11 TCGA-BR-8078-01 X 114869331 114869331 G A PLS3 Missense_Mutation p.A241T 0.25 deleterious(0.04) probably_damaging(0.993) TCGA-BR-8078-01 X 117520421 117520421 T A WDR44 Intron 0.46 TCGA-BR-8078-01 X 119005603 119005603 C T RNF113A 5'UTR 0.36 TCGA-BR-8078-01 X 119068456 119068456 C T NKAP Splice_Site p.X246_splice 0.30 TCGA-BR-8078-01 X 119438315 119438315 G C TMEM255A Missense_Mutation p.I30M 0.33 deleterious(0) possibly_damaging(0.595) TCGA-BR-8078-01 X 122319770 122319770 G A GRIA3 Missense_Mutation p.E66K 0.33 tolerated(0.41) probably_damaging(0.996) TCGA-BR-8078-01 X 122765540 122765540 G A THOC2 Missense_Mutation p.S827L 0.24 tolerated(0.46) benign(0.001) TCGA-BR-8078-01 X 125298904 125298904 C T DCAF12L2 Missense_Mutation p.R335H 0.12 deleterious(0) probably_damaging(0.999) TCGA-BR-8078-01 X 128963037 128963037 A G ZDHHC9 Missense_Mutation p.L83P 0.38 deleterious(0) probably_damaging(0.999) TCGA-BR-8078-01 X 129629114 129629114 C T RP1-274L7.1 RNA 0.47 TCGA-BR-8078-01 X 131214036 131214037 - T FRMD7 Frame_Shift_Ins p.Q350Tfs*24 0.21 TCGA-BR-8078-01 X 132351559 132351559 G A TFDP3 Silent p.S243S 0.31 TCGA-BR-8078-01 X 132438841 132438841 A G GPC4 Missense_Mutation p.S402P 0.20 deleterious(0.01) benign(0) TCGA-BR-8078-01 X 132439828 132439828 G A GPC4 Missense_Mutation p.T376I 0.25 deleterious(0.04) probably_damaging(0.999) TCGA-BR-8078-01 X 135307005 135307005 G A MAP7D3 Missense_Mutation p.T725I 0.21 deleterious(0.01) probably_damaging(0.983) TCGA-BR-8078-01 X 135426886 135426886 A - GPR112 Frame_Shift_Del p.T343Rfs*138 0.24 TCGA-BR-8078-01 X 136651098 136651098 C T ZIC3 Silent p.D366D 0.36 TCGA-BR-8078-01 X 13787350 13787351 TT - OFD1 3'UTR 0.26 TCGA-BR-8078-01 X 137939797 137939797 G A FGF13 Nonsense_Mutation p.R32* 0.33 TCGA-BR-8078-01 X 140336519 140336519 C T SPANXC Silent p.T24T 0.53 TCGA-BR-8078-01 X 14038456 14038456 C T GEMIN8 Silent p.A71A 0.34 TCGA-BR-8078-01 X 140985151 140985151 G T MAGEC3 Missense_Mutation p.S536I 0.36 tolerated(0.23) benign(0.19) TCGA-BR-8078-01 X 141291102 141291102 C T MAGEC2 Missense_Mutation p.M224I 0.07 tolerated(0.06) benign(0.076) TCGA-BR-8078-01 X 142605149 142605149 T - SPANXN3 Frame_Shift_Del p.N24Mfs*12 0.32 TCGA-BR-8078-01 X 148627251 148627251 G A CXorf40A Silent p.T25T 0.40 TCGA-BR-8078-01 X 149814219 149814219 G A MTM1 Missense_Mutation p.G248S 0.28 deleterious(0) probably_damaging(1) TCGA-BR-8078-01 X 149931081 149931081 C T MTMR1 Missense_Mutation p.A626V 0.27 tolerated(0.25) benign(0.004) TCGA-BR-8078-01 X 150348872 150348872 A C GPR50 Missense_Mutation p.N273H 0.23 tolerated(0.06) benign(0.107) TCGA-BR-8078-01 X 151532939 151532939 T C GABRA3 Missense_Mutation p.Q35R 0.31 tolerated_low_confidence(0.12) benign(0.001) TCGA-BR-8078-01 X 152807798 152807798 G A ATP2B3 Missense_Mutation p.D228N 0.35 deleterious(0) probably_damaging(1) TCGA-BR-8078-01 X 152915736 152915736 C T DUSP9 Silent p.G377G 0.33 TCGA-BR-8078-01 X 153052285 153052285 A G IDH3G Missense_Mutation p.Y299H 0.36 deleterious(0.01) probably_damaging(0.987) TCGA-BR-8078-01 X 153277247 153277247 T C IRAK1 3'UTR 0.31 TCGA-BR-8078-01 X 153549180 153549180 G A TKTL1 Missense_Mutation p.R369Q 0.25 deleterious(0.01) possibly_damaging(0.906) TCGA-BR-8078-01 X 153626868 153626868 G A RPL10 Missense_Mutation p.R3H 0.29 tolerated(0.1) benign(0.015) TCGA-BR-8078-01 X 153716404 153716404 C T SLC10A3 Silent p.T292T 0.25 TCGA-BR-8078-01 X 153880696 153880696 G A CTAG2 Missense_Mutation p.P160L 0.30 deleterious_low_confidence(0) unknown(0) TCGA-BR-8078-01 X 153880812 153880812 C T CTAG2 Silent p.A121A 0.27 TCGA-BR-8078-01 X 153944591 153944591 C T GAB3 Missense_Mutation p.R29H 0.24 deleterious(0) probably_damaging(0.998) TCGA-BR-8078-01 X 154158428 154158428 T - F8 Frame_Shift_Del p.I1213Ffs*5 0.37 TCGA-BR-8078-01 X 154507113 154507113 T G CLIC2 3'UTR 0.40 TCGA-BR-8078-01 X 1584341 1584341 C - P2RY8 3'UTR 0.17 TCGA-BR-8078-01 X 16838317 16838317 T G TXLNG Missense_Mutation p.L146R 0.29 deleterious(0) probably_damaging(1) TCGA-BR-8078-01 X 16847735 16847735 C T TXLNG Nonsense_Mutation p.R236* 0.25 TCGA-BR-8078-01 X 16850813 16850813 C T TXLNG Missense_Mutation p.T311M 0.33 deleterious(0) possibly_damaging(0.688) TCGA-BR-8078-01 X 17092244 17092244 C T REPS2 Silent p.P447P 0.33 TCGA-BR-8078-01 X 18606123 18606123 G A CDKL5 Missense_Mutation p.G202R 0.31 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-BR-8078-01 X 21995317 21995317 G T SMS Missense_Mutation p.K156N 0.22 deleterious(0.03) possibly_damaging(0.858) TCGA-BR-8078-01 X 2408343 2408343 G T ZBED1 Missense_Mutation p.P140T 0.30 deleterious(0) probably_damaging(1) TCGA-BR-8078-01 X 26157454 26157454 T G MAGEB18 Missense_Mutation p.L118V 0.27 deleterious(0) probably_damaging(0.991) TCGA-BR-8078-01 X 27999324 27999324 G A DCAF8L1 Missense_Mutation p.A43V 0.28 tolerated_low_confidence(0.31) benign(0.234) TCGA-BR-8078-01 X 2867493 2867493 G T ARSE Missense_Mutation p.L236I 0.20 tolerated(0.19) benign(0.014) TCGA-BR-8078-01 X 32305784 32305784 C T DMD Missense_Mutation p.R2051Q 0.31 benign(0.417) TCGA-BR-8078-01 X 34961045 34961045 C T FAM47B Missense_Mutation p.R33C 0.35 tolerated(0.12) benign(0.015) TCGA-BR-8078-01 X 37027077 37027077 C - FAM47C Frame_Shift_Del p.P200Rfs*625 0.34 TCGA-BR-8078-01 X 37545207 37545207 G A XK 5'UTR 0.30 TCGA-BR-8078-01 X 37664356 37664356 G A CYBB Missense_Mutation p.A417T 0.40 deleterious(0.01) probably_damaging(0.997) TCGA-BR-8078-01 X 41075795 41075795 G A USP9X Missense_Mutation p.R1992Q 0.29 tolerated(0.14) benign(0.269) TCGA-BR-8078-01 X 47083076 47083076 C T CDK16 Silent p.G114G 0.25 TCGA-BR-8078-01 X 48325406 48325406 C T SLC38A5 Missense_Mutation p.G63D 0.50 deleterious(0) probably_damaging(0.99) TCGA-BR-8078-01 X 48368302 48368302 C T PORCN Missense_Mutation p.L32F 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8078-01 X 50213090 50213090 C T DGKK RNA 0.25 TCGA-BR-8078-01 X 51487453 51487453 A - GSPT2 Frame_Shift_Del p.N246Tfs*11 0.32 TCGA-BR-8078-01 X 52682511 52682511 G A SSX7 Silent p.D4D 0.30 TCGA-BR-8078-01 X 53105764 53105764 G A GPR173 5'UTR 0.31 TCGA-BR-8078-01 X 53241077 53241077 C T KDM5C Silent p.R378R 0.30 TCGA-BR-8078-01 X 53246351 53246351 G A KDM5C Missense_Mutation p.R211W 0.36 deleterious(0) probably_damaging(0.998) TCGA-BR-8078-01 X 53455587 53455587 G A RIBC1 Intron 0.33 TCGA-BR-8078-01 X 53566005 53566005 T C HUWE1 Missense_Mutation p.H3890R 0.30 unknown(0) TCGA-BR-8078-01 X 54278032 54278032 T C WNK3 Missense_Mutation p.H819R 0.22 tolerated(0.46) benign(0.008) TCGA-BR-8078-01 X 54472572 54472572 G - FGD1 Frame_Shift_Del p.E953Nfs*28 0.28 TCGA-BR-8078-01 X 54836447 54836447 C T MAGED2 Missense_Mutation p.P113L 0.24 tolerated_low_confidence(0.38) benign(0.004) TCGA-BR-8078-01 X 57935671 57935671 C T ZXDA Missense_Mutation p.G395D 0.36 deleterious(0) possibly_damaging(0.849) TCGA-BR-8078-01 X 5947435 5947435 A G NLGN4X Missense_Mutation p.Y171H 0.45 deleterious(0.05) probably_damaging(0.994) TCGA-BR-8078-01 X 63551494 63551494 A - MTMR8 Frame_Shift_Del p.F432Sfs*19 0.35 TCGA-BR-8078-01 X 67941513 67941513 C T STARD8 Missense_Mutation p.A795V 0.23 deleterious(0) possibly_damaging(0.79) TCGA-BR-8078-01 X 70468578 70468578 T G ZMYM3 Silent p.T565T 0.36 TCGA-BR-8078-01 X 70472970 70472970 C - ZMYM3 Frame_Shift_Del p.A46Pfs*67 0.19 TCGA-BR-8078-01 X 70612474 70612474 A T TAF1 Missense_Mutation p.K966M 0.27 deleterious(0) probably_damaging(0.997) TCGA-BR-8078-01 X 70836494 70836495 - T CXCR3 Frame_Shift_Ins p.V324Gfs*83 0.24 TCGA-BR-8078-01 X 71428342 71428342 A G ERCC6L Missense_Mutation p.L92P 0.30 deleterious(0) probably_damaging(0.99) TCGA-BR-8078-01 X 73065225 73065225 C T XIST RNA 0.38 TCGA-BR-8078-01 X 73811803 73811803 A T RLIM Silent p.S449S 0.22 TCGA-BR-8078-01 X 75648366 75648366 G A MAGEE1 Missense_Mutation p.V15I 0.25 tolerated_low_confidence(0.06) benign(0.013) TCGA-BR-8078-01 X 77528566 77528566 T C CYSLTR1 Silent p.S226S 0.29 TCGA-BR-8078-01 X 79978170 79978171 - A BRWD3 Frame_Shift_Ins p.L589Ffs*5 0.27 TCGA-BR-8078-01 X 82763842 82763842 G A POU3F4 Silent p.P170P 0.40 TCGA-BR-8078-01 X 84510755 84510755 T A ZNF711 Missense_Mutation p.D190E 0.28 tolerated_low_confidence(0.41) possibly_damaging(0.739) TCGA-BR-8078-01 X 8538695 8538695 C T KAL1 Missense_Mutation p.V303I 0.31 tolerated(0.58) benign(0.001) TCGA-BR-8078-01 X 8555939 8555939 A T KAL1 Missense_Mutation p.F208I 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-BR-8078-01 X 85906124 85906124 C T DACH2 Silent p.S242S 0.27 TCGA-BR-8078-01 X 92964569 92964569 A - FAM133A Frame_Shift_Del p.T53Qfs*6 0.28 TCGA-BR-8078-01 X 96212939 96212939 C A DIAPH2 Missense_Mutation p.P576H 0.23 tolerated(0.07) unknown(0) TCGA-BR-8078-01 X 99891687 99891687 G A TSPAN6 Missense_Mutation p.A2V 0.36 deleterious_low_confidence(0.02) benign(0.268) TCGA-BR-8080-01 10 101824989 101824989 G A CPN1 Missense_Mutation p.R239C 0.07 deleterious(0.01) benign(0.082) TCGA-BR-8080-01 10 16918918 16918918 G C CUBN Missense_Mutation p.F3028L 0.14 deleterious(0) possibly_damaging(0.488) TCGA-BR-8080-01 10 26463375 26463375 T A MYO3A Nonsense_Mutation p.Y1394* 0.09 TCGA-BR-8080-01 10 70243138 70243138 T G SLC25A16 3'UTR 0.21 TCGA-BR-8080-01 10 70644504 70644504 C T STOX1 Missense_Mutation p.R318C 0.06 deleterious(0) probably_damaging(1) TCGA-BR-8080-01 10 97141493 97141493 G A SORBS1 Silent p.S534S 0.14 TCGA-BR-8080-01 11 100999184 100999184 G A PGR Silent p.S206S 0.25 TCGA-BR-8080-01 11 123908818 123908818 A C OR10G7 Silent p.A297A 0.22 TCGA-BR-8080-01 11 13441177 13441177 A C BTBD10 Missense_Mutation p.S138R 0.08 tolerated_low_confidence(0.34) benign(0.229) TCGA-BR-8080-01 11 36512115 36512115 C T TRAF6 Missense_Mutation p.S281N 0.11 tolerated(0.29) benign(0.003) TCGA-BR-8080-01 11 43876699 43876699 G A HSD17B12 Silent p.S280S 0.12 TCGA-BR-8080-01 11 4661157 4661157 T G OR51D1 Missense_Mutation p.F46C 0.07 tolerated(0.09) benign(0.005) TCGA-BR-8080-01 11 55405859 55405859 T C OR4P4 Missense_Mutation p.L9S 0.09 deleterious(0.01) benign(0.01) TCGA-BR-8080-01 11 56143498 56143498 G T OR8U1 Missense_Mutation p.M133I 0.06 tolerated(0.08) benign(0.002) TCGA-BR-8080-01 11 5624861 5624861 T C TRIM6-TRIM34 Missense_Mutation p.F135L 0.09 deleterious(0) possibly_damaging(0.874) TCGA-BR-8080-01 11 5809592 5809592 A G OR52N1 Missense_Mutation p.L152P 0.08 deleterious(0) possibly_damaging(0.857) TCGA-BR-8080-01 11 65387008 65387008 C T PCNXL3 Missense_Mutation p.A569V 0.24 tolerated(0.11) benign(0.04) TCGA-BR-8080-01 11 6789842 6789842 G A OR2AG2 Missense_Mutation p.A116V 0.14 deleterious(0.01) possibly_damaging(0.899) TCGA-BR-8080-01 11 7439317 7439317 T C SYT9 Missense_Mutation p.I432T 0.10 deleterious(0.01) probably_damaging(0.992) TCGA-BR-8080-01 11 76371306 76371306 G C LRRC32 Missense_Mutation p.S444C 0.13 deleterious(0) possibly_damaging(0.682) TCGA-BR-8080-01 11 85396349 85396349 C A CCDC89 Missense_Mutation p.L275F 0.06 deleterious(0.03) probably_damaging(0.999) TCGA-BR-8080-01 12 113346553 113346553 G A OAS1 Silent p.A131A 0.16 TCGA-BR-8080-01 12 130184611 130184611 C A TMEM132D Missense_Mutation p.D238Y 0.06 deleterious(0) possibly_damaging(0.789) TCGA-BR-8080-01 12 53777235 53777235 C G SP1 Missense_Mutation p.L502V 0.07 tolerated(0.49) possibly_damaging(0.636) TCGA-BR-8080-01 12 67700348 67700348 T G CAND1 Missense_Mutation p.L967R 0.15 deleterious(0) probably_damaging(0.959) TCGA-BR-8080-01 12 7639263 7639263 C A CD163 Nonsense_Mutation p.E764* 0.13 TCGA-BR-8080-01 12 80733021 80733021 C G OTOGL Nonsense_Mutation p.S1667* 0.11 TCGA-BR-8080-01 12 81101535 81101535 T G MYF6 Missense_Mutation p.F13V 0.10 deleterious(0) probably_damaging(0.988) TCGA-BR-8080-01 13 101717784 101717784 C T NALCN Missense_Mutation p.G1526S 0.30 tolerated(0.35) benign(0.32) TCGA-BR-8080-01 13 101747941 101747941 A G NALCN Missense_Mutation p.W1085R 0.26 deleterious(0.01) possibly_damaging(0.884) TCGA-BR-8080-01 13 79175862 79175862 C T POU4F1 Silent p.T316T 0.16 TCGA-BR-8080-01 14 107170113 107170113 G A IGHV1-69 Nonsense_Mutation p.R57* 0.13 TCGA-BR-8080-01 14 50666574 50666574 C T SOS2 Splice_Site p.X116_splice 0.22 TCGA-BR-8080-01 14 74060458 74060458 C T ACOT4 Silent p.L170L 0.40 TCGA-BR-8080-01 14 86089626 86089626 G A FLRT2 Missense_Mutation p.E590K 0.16 deleterious(0) probably_damaging(0.997) TCGA-BR-8080-01 14 94088470 94088470 T G UNC79 Missense_Mutation p.S1454A 0.18 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-BR-8080-01 14 95058443 95058443 C T SERPINA5 Missense_Mutation p.A363V 0.05 tolerated(0.09) benign(0.075) TCGA-BR-8080-01 15 23811873 23811873 T C MKRN3 Missense_Mutation p.M315T 0.32 deleterious(0) probably_damaging(0.984) TCGA-BR-8080-01 15 40754422 40754422 C T BAHD1 Missense_Mutation p.R582C 0.08 tolerated_low_confidence(0.07) probably_damaging(0.994) TCGA-BR-8080-01 15 48434613 48434613 C G MYEF2 3'UTR 0.30 TCGA-BR-8080-01 15 72511293 72511293 C T PKM Missense_Mutation p.C49Y 0.12 deleterious(0) probably_damaging(0.967) TCGA-BR-8080-01 15 73023934 73023934 C G BBS4 Silent p.P301P 0.23 TCGA-BR-8080-01 15 89398570 89398570 A G ACAN Silent p.L918L 0.08 TCGA-BR-8080-01 15 89421211 89421211 C T HAPLN3 Missense_Mutation p.R358H 0.21 deleterious(0.04) benign(0.017) TCGA-BR-8080-01 16 14946401 14946401 G A NOMO1 Missense_Mutation p.V233M 0.26 deleterious(0) probably_damaging(0.982) TCGA-BR-8080-01 16 2223996 2223996 G A TRAF7 Missense_Mutation p.V404I 0.18 tolerated(0.07) possibly_damaging(0.771) TCGA-BR-8080-01 16 28606764 28606764 G T SULT1A2 Missense_Mutation p.T99K 0.15 deleterious(0.04) benign(0.236) TCGA-BR-8080-01 16 29810471 29810471 G A KIF22 Missense_Mutation p.R242H 0.41 tolerated(0.1) probably_damaging(1) TCGA-BR-8080-01 16 51173596 51173596 G A SALL1 Missense_Mutation p.A846V 0.19 tolerated(0.11) benign(0.005) TCGA-BR-8080-01 16 55363013 55363013 A C IRX6 Missense_Mutation p.S375R 0.09 deleterious(0.01) probably_damaging(0.997) TCGA-BR-8080-01 16 64981480 64981480 T G CDH11 3'UTR 0.09 TCGA-BR-8080-01 16 75665710 75665710 C T KARS Missense_Mutation p.R348H 0.06 deleterious(0) possibly_damaging(0.725) TCGA-BR-8080-01 16 76569647 76569647 T G CNTNAP4 Silent p.T914T 0.17 TCGA-BR-8080-01 17 10399568 10399568 G C MYH1 Missense_Mutation p.A1652G 0.07 tolerated(1) benign(0) TCGA-BR-8080-01 17 2202841 2202841 C A SMG6 Silent p.R402R 0.09 TCGA-BR-8080-01 17 27999110 27999110 C T SSH2 Missense_Mutation p.A191T 0.08 deleterious(0) possibly_damaging(0.626) TCGA-BR-8080-01 17 38244651 38244651 G A THRA Missense_Mutation p.V294I 0.07 tolerated(0.47) benign(0.113) TCGA-BR-8080-01 17 42744530 42744530 C A C17orf104 Silent p.G417G 0.07 TCGA-BR-8080-01 17 52978168 52978168 A C TOM1L1 5'UTR 0.14 TCGA-BR-8080-01 17 73627585 73627585 C A RECQL5 Missense_Mutation p.G465C 0.06 deleterious(0.02) possibly_damaging(0.899) TCGA-BR-8080-01 17 7573994 7573994 T C TP53 Missense_Mutation p.N345D 0.32 deleterious(0.01) probably_damaging(1) TCGA-BR-8080-01 18 30847187 30847187 T A CCDC178 Silent p.A417A 0.10 TCGA-BR-8080-01 18 31324793 31324793 G A ASXL3 Missense_Mutation p.V1661I 0.18 benign(0) TCGA-BR-8080-01 18 321787 321787 G A COLEC12 Missense_Mutation p.P695L 0.19 deleterious(0) unknown(0) TCGA-BR-8080-01 18 3879582 3879582 C T DLGAP1 Missense_Mutation p.V163I 0.10 tolerated(0.37) benign(0.001) TCGA-BR-8080-01 18 40851770 40851770 T C SYT4 Missense_Mutation p.I293V 0.05 tolerated(1) benign(0.001) TCGA-BR-8080-01 18 47800630 47800630 C T MBD1 Missense_Mutation p.D358N 0.06 deleterious(0) probably_damaging(1) TCGA-BR-8080-01 18 63511174 63511174 G T CDH7 Missense_Mutation p.D370Y 0.08 deleterious(0) probably_damaging(0.977) TCGA-BR-8080-01 18 63547907 63547907 G T CDH7 Missense_Mutation p.W712L 0.06 tolerated(0.83) benign(0.01) TCGA-BR-8080-01 19 19258640 19258640 G A MEF2B Missense_Mutation p.T87M 0.10 deleterious(0) benign(0.276) TCGA-BR-8080-01 19 22155381 22155381 T A ZNF208 Missense_Mutation p.T819S 0.10 tolerated(1) unknown(0) TCGA-BR-8080-01 19 37853775 37853775 A G HKR1 Missense_Mutation p.K360E 0.16 tolerated(0.3) benign(0.348) TCGA-BR-8080-01 19 3969700 3969700 G A DAPK3 Missense_Mutation p.H12Y 0.09 tolerated(0.39) benign(0) TCGA-BR-8080-01 19 43698670 43698670 G A PSG4 Silent p.F355F 0.10 TCGA-BR-8080-01 19 48733886 48733886 C A CARD8 Missense_Mutation p.A282S 0.15 tolerated(0.19) benign(0.039) TCGA-BR-8080-01 19 50338287 50338287 C T MED25 Silent p.R509R 0.04 TCGA-BR-8080-01 19 50360274 50360274 C T PTOV1 Missense_Mutation p.R201C 0.09 deleterious(0) benign(0.437) TCGA-BR-8080-01 19 52937331 52937331 C G ZNF534 Missense_Mutation p.L47V 0.15 tolerated(0.3) possibly_damaging(0.874) TCGA-BR-8080-01 19 55331371 55331371 C T KIR3DL1 Missense_Mutation p.L187F 0.05 tolerated(0.14) benign(0.015) TCGA-BR-8080-01 19 55349178 55349178 T C KIR2DS4 Missense_Mutation p.I73T 0.04 tolerated_low_confidence(0.13) benign(0.079) TCGA-BR-8080-01 19 55449462 55449462 C A NLRP7 Silent p.R693R 0.09 TCGA-BR-8080-01 19 57641627 57641627 A G USP29 Silent p.Q528Q 0.11 TCGA-BR-8080-01 19 58578607 58578607 G A ZNF135 Missense_Mutation p.R276Q 0.18 tolerated(0.47) benign(0.059) TCGA-BR-8080-01 19 58862776 58862776 G A A1BG Silent p.V297V 0.09 TCGA-BR-8080-01 19 9087815 9087815 T C MUC16 Missense_Mutation p.S1334G 0.19 unknown(0) TCGA-BR-8080-01 1 10363932 10363932 G T KIF1B Intron 0.07 TCGA-BR-8080-01 1 1153081 1153081 G A SDF4 Intron 0.11 TCGA-BR-8080-01 1 150940919 150940919 G A CERS2 Silent p.N81N 0.23 TCGA-BR-8080-01 1 156524092 156524092 G A IQGAP3 Silent p.G461G 0.08 TCGA-BR-8080-01 1 158227262 158227262 T G CD1A Missense_Mutation p.L312R 0.04 deleterious(0) possibly_damaging(0.601) TCGA-BR-8080-01 1 158261141 158261141 T C CD1C Silent p.F93F 0.26 TCGA-BR-8080-01 1 158595998 158595998 T G SPTA1 Missense_Mutation p.S1950R 0.24 tolerated(0.18) possibly_damaging(0.845) TCGA-BR-8080-01 1 158606546 158606546 T G SPTA1 Missense_Mutation p.K1732T 0.24 deleterious(0) probably_damaging(0.998) TCGA-BR-8080-01 1 165182992 165182992 A G LMX1A Silent p.T185T 0.06 TCGA-BR-8080-01 1 197111713 197111713 T A ASPM Missense_Mutation p.S557C 0.09 tolerated(0.44) benign(0.002) TCGA-BR-8080-01 1 198711490 198711490 A C PTPRC Missense_Mutation p.Q897H 0.07 deleterious(0) probably_damaging(1) TCGA-BR-8080-01 1 203144565 203144565 A G MYBPH Missense_Mutation p.L77P 0.06 deleterious(0.04) probably_damaging(0.991) TCGA-BR-8080-01 1 216692701 216692701 A C ESRRG Missense_Mutation p.L321V 0.12 deleterious(0) probably_damaging(0.994) TCGA-BR-8080-01 1 228469631 228469631 C A OBSCN Intron 0.29 TCGA-BR-8080-01 1 238048098 238048098 G T ZP4 Missense_Mutation p.S454Y 0.12 deleterious(0.01) possibly_damaging(0.88) TCGA-BR-8080-01 1 248202573 248202573 A C OR2L2 3'UTR 0.13 TCGA-BR-8080-01 1 59247707 59247707 T A JUN 3'UTR 0.07 TCGA-BR-8080-01 1 82421583 82421583 A T LPHN2 Missense_Mutation p.N602I 0.10 deleterious(0) probably_damaging(1) TCGA-BR-8080-01 1 89273385 89273385 A T PKN2 Nonsense_Mutation p.K677* 0.07 TCGA-BR-8080-01 20 31387101 31387101 C T DNMT3B Nonsense_Mutation p.R576* 0.12 TCGA-BR-8080-01 20 35125434 35125434 G T DLGAP4 Missense_Mutation p.A659S 0.09 tolerated(0.82) benign(0.151) TCGA-BR-8080-01 20 39830759 39830759 C T ZHX3 Missense_Mutation p.R933H 0.13 deleterious_low_confidence(0.01) benign(0.001) TCGA-BR-8080-01 20 52674669 52674669 C A BCAS1 Missense_Mutation p.V33F 0.14 tolerated(0.73) benign(0.064) TCGA-BR-8080-01 20 5294674 5294674 G A PROKR2 Silent p.Y114Y 0.12 TCGA-BR-8080-01 20 5924509 5924509 C A TRMT6 Intron 0.21 TCGA-BR-8080-01 22 22735654 22735654 G A IGLV1-44 Silent p.G97G 0.12 TCGA-BR-8080-01 22 22764518 22764518 A T IGLV1-40 Missense_Mutation p.K87M 0.15 deleterious_low_confidence(0) possibly_damaging(0.466) TCGA-BR-8080-01 22 42458989 42458989 G A NAGA Missense_Mutation p.R267W 0.10 deleterious(0) probably_damaging(0.961) TCGA-BR-8080-01 2 116503686 116503686 A T DPP10 Nonsense_Mutation p.K297* 0.09 TCGA-BR-8080-01 2 140995737 140995737 A C LRP1B Missense_Mutation p.M4515R 0.09 benign(0.001) TCGA-BR-8080-01 2 141093238 141093238 A G LRP1B Missense_Mutation p.L4021P 0.07 possibly_damaging(0.766) TCGA-BR-8080-01 2 166003271 166003271 T C SCN3A Missense_Mutation p.K550R 0.12 tolerated(0.38) benign(0.061) TCGA-BR-8080-01 2 176981726 176981726 G A HOXD10 Silent p.P55P 0.07 TCGA-BR-8080-01 2 179413171 179413171 C T TTN Missense_Mutation p.R31061H 0.05 TCGA-BR-8080-01 2 179424681 179424681 T G TTN Missense_Mutation p.K28726N 0.07 TCGA-BR-8080-01 2 179439187 179439187 A G TTN Missense_Mutation p.L23891P 0.07 TCGA-BR-8080-01 2 179600580 179600580 A G TTN Missense_Mutation p.Y4865H 0.13 TCGA-BR-8080-01 2 207172843 207172843 T C ZDBF2 Silent p.S1197S 0.09 TCGA-BR-8080-01 2 223158806 223158806 G T PAX3 Intron 0.16 TCGA-BR-8080-01 2 29416759 29416759 C T ALK Silent p.P1398P 0.11 TCGA-BR-8080-01 2 70315122 70315122 A T PCBP1 Missense_Mutation p.I83F 0.08 deleterious(0.03) benign(0.023) TCGA-BR-8080-01 3 134080535 134080535 G A AMOTL2 Missense_Mutation p.A465V 0.14 deleterious(0) probably_damaging(0.995) TCGA-BR-8080-01 3 149684074 149684074 A G PFN2 3'UTR 0.11 TCGA-BR-8080-01 3 16336421 16336421 C A OXNAD1 Missense_Mutation p.P117T 0.06 deleterious(0) probably_damaging(1) TCGA-BR-8080-01 3 171330103 171330103 G A PLD1 Missense_Mutation p.R950W 0.09 deleterious(0) possibly_damaging(0.453) TCGA-BR-8080-01 3 38591931 38591931 C G SCN5A Missense_Mutation p.D1978H 0.09 deleterious(0.02) probably_damaging(1) TCGA-BR-8080-01 3 46501147 46501147 G A LTF Missense_Mutation p.A69V 0.07 tolerated(0.24) benign(0.029) TCGA-BR-8080-01 3 49568587 49568587 C T DAG1 Missense_Mutation p.R215W 0.10 deleterious(0) possibly_damaging(0.656) TCGA-BR-8080-01 3 54958847 54958847 T C LRTM1 Missense_Mutation p.S135G 0.17 tolerated(0.36) benign(0.006) TCGA-BR-8080-01 3 58109299 58109299 C G FLNB Nonsense_Mutation p.Y1202* 0.10 TCGA-BR-8080-01 3 97868494 97868494 A G OR5H14 Missense_Mutation p.S89G 0.13 tolerated(0.14) benign(0.006) TCGA-BR-8080-01 4 121961132 121961132 T A NDNF Missense_Mutation p.K89M 0.09 deleterious(0.04) possibly_damaging(0.497) TCGA-BR-8080-01 4 148407147 148407147 T G EDNRA Missense_Mutation p.I105S 0.11 deleterious(0) probably_damaging(1) TCGA-BR-8080-01 4 155254538 155254538 T C DCHS2 Missense_Mutation p.E442G 0.12 deleterious(0) probably_damaging(0.99) TCGA-BR-8080-01 4 158041808 158041808 T G GLRB Missense_Mutation p.F75V 0.10 deleterious(0.01) probably_damaging(0.948) TCGA-BR-8080-01 4 160251157 160251157 A T RAPGEF2 Missense_Mutation p.I272F 0.07 deleterious(0) probably_damaging(0.998) TCGA-BR-8080-01 4 177052829 177052829 G C WDR17 Missense_Mutation p.L370F 0.09 deleterious(0.04) benign(0.236) TCGA-BR-8080-01 4 178355641 178355641 C T AGA Missense_Mutation p.R234H 0.13 deleterious(0) probably_damaging(0.994) TCGA-BR-8080-01 4 184431507 184431507 T C ING2 Missense_Mutation p.L82P 0.06 deleterious(0.04) probably_damaging(0.959) TCGA-BR-8080-01 4 20493407 20493407 T G SLIT2 Missense_Mutation p.S267A 0.07 tolerated(0.26) benign(0.002) TCGA-BR-8080-01 4 30724803 30724803 G A PCDH7 Missense_Mutation p.D587N 0.14 tolerated(0.4) benign(0.167) TCGA-BR-8080-01 4 39483039 39483039 G A LIAS 3'Flank 0.16 TCGA-BR-8080-01 4 419995 419995 C G ABCA11P RNA 0.12 TCGA-BR-8080-01 4 42895621 42895621 T C GRXCR1 Missense_Mutation p.V113A 0.09 deleterious(0) probably_damaging(0.99) TCGA-BR-8080-01 4 68795684 68795684 C A TMPRSS11A Missense_Mutation p.R135I 0.06 tolerated(0.31) benign(0.012) TCGA-BR-8080-01 4 7056285 7056285 G A TADA2B Missense_Mutation p.R256H 0.08 tolerated(0.07) possibly_damaging(0.793) TCGA-BR-8080-01 4 76925962 76925962 C A CXCL9 Missense_Mutation p.Q92H 0.12 deleterious(0.01) unknown(0) TCGA-BR-8080-01 4 861053 861053 C T GAK Missense_Mutation p.G855R 0.11 tolerated(0.16) benign(0.004) TCGA-BR-8080-01 4 94137982 94137982 A C GRID2 Missense_Mutation p.S295R 0.12 tolerated(0.13) benign(0.033) TCGA-BR-8080-01 5 101593707 101593707 A C SLCO4C1 Missense_Mutation p.L405V 0.08 tolerated(0.27) probably_damaging(0.93) TCGA-BR-8080-01 5 11022936 11022936 G A CTNND2 Missense_Mutation p.R982W 0.13 deleterious(0.02) possibly_damaging(0.806) TCGA-BR-8080-01 5 110712565 110712565 T G CAMK4 Missense_Mutation p.L104R 0.16 deleterious(0) probably_damaging(0.915) TCGA-BR-8080-01 5 138658622 138658622 G A MATR3 Missense_Mutation p.S705N 0.11 tolerated_low_confidence(0.57) benign(0.006) TCGA-BR-8080-01 5 139189337 139189337 G T PSD2 Silent p.L104L 0.09 TCGA-BR-8080-01 5 140263637 140263637 G A PCDHA13 Missense_Mutation p.R595H 0.12 tolerated_low_confidence(0.07) benign(0.12) TCGA-BR-8080-01 5 140480968 140480968 G T PCDHB3 Silent p.P245P 0.11 TCGA-BR-8080-01 5 140563160 140563160 C A PCDHB16 Missense_Mutation p.D342E 0.05 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BR-8080-01 5 140579789 140579789 G A PCDHB11 Missense_Mutation p.V148I 0.13 tolerated_low_confidence(0.1) benign(0.009) TCGA-BR-8080-01 5 147016608 147016608 G T JAKMIP2 Missense_Mutation p.Q512K 0.09 deleterious(0.01) benign(0.082) TCGA-BR-8080-01 5 156286 156286 C T PLEKHG4B Missense_Mutation p.A414V 0.16 deleterious(0.04) possibly_damaging(0.799) TCGA-BR-8080-01 5 170722912 170722912 A C RANBP17 Missense_Mutation p.S1022R 0.07 tolerated(0.35) benign(0.08) TCGA-BR-8080-01 5 35965825 35965825 G T UGT3A1 Missense_Mutation p.T169K 0.07 tolerated(0.14) benign(0.039) TCGA-BR-8080-01 5 7789859 7789859 C T ADCY2 Silent p.N858N 0.17 TCGA-BR-8080-01 5 7820795 7820795 A G ADCY2 Missense_Mutation p.K1039R 0.10 tolerated(0.09) benign(0.272) TCGA-BR-8080-01 5 78533384 78533384 T A JMY Missense_Mutation p.I304N 0.07 deleterious(0.02) probably_damaging(0.91) TCGA-BR-8080-01 5 82836238 82836238 A G VCAN Silent p.P2472P 0.10 TCGA-BR-8080-01 5 82937440 82937440 C T HAPLN1 Missense_Mutation p.V314I 0.06 tolerated(0.16) probably_damaging(0.976) TCGA-BR-8080-01 6 129823886 129823886 T C LAMA2 Missense_Mutation p.I2776T 0.07 deleterious(0.03) benign(0.008) TCGA-BR-8080-01 6 150290418 150290418 C G ULBP1 Missense_Mutation p.Q183E 0.06 tolerated(0.2) benign(0.003) TCGA-BR-8080-01 6 161143543 161143543 T C PLG Silent p.S400S 0.14 TCGA-BR-8080-01 6 26508948 26508948 G T BTN1A1 Missense_Mutation p.R376M 0.10 deleterious(0) possibly_damaging(0.781) TCGA-BR-8080-01 6 88224725 88224725 C T RARS2 Missense_Mutation p.V534M 0.09 tolerated(0.08) benign(0.031) TCGA-BR-8080-01 7 100491202 100491202 C T ACHE Missense_Mutation p.V218M 0.15 deleterious(0) possibly_damaging(0.694) TCGA-BR-8080-01 7 141336807 141336807 G A AGK Missense_Mutation p.S239N 0.20 tolerated(0.16) benign(0.039) TCGA-BR-8080-01 7 142630549 142630549 C - TRPV5 Frame_Shift_Del p.G3Vfs*43 0.16 TCGA-BR-8080-01 7 151833868 151833868 C T KMT2C 3'UTR 0.19 TCGA-BR-8080-01 7 4800738 4800738 G A FOXK1 Silent p.A580A 0.10 TCGA-BR-8080-01 7 50057879 50057879 C A ZPBP Missense_Mutation p.R247L 0.11 tolerated(0.44) benign(0) TCGA-BR-8080-01 7 5780920 5780920 C T RNF216 Missense_Mutation p.R243H 0.05 tolerated_low_confidence(0.45) benign(0.008) TCGA-BR-8080-01 7 6082613 6082613 C T EIF2AK1 Missense_Mutation p.A248T 0.12 tolerated(0.57) benign(0.158) TCGA-BR-8080-01 7 65419336 65419336 T G VKORC1L1 3'UTR 0.21 TCGA-BR-8080-01 7 6731622 6731622 T G ZNF12 Missense_Mutation p.R317S 0.13 deleterious(0) probably_damaging(1) TCGA-BR-8080-01 7 98257796 98257796 G A NPTX2 Missense_Mutation p.R384H 0.20 tolerated(0.06) benign(0.035) TCGA-BR-8080-01 8 100999827 100999827 G T RGS22 Silent p.I1013I 0.08 TCGA-BR-8080-01 8 104427572 104427572 T C DCAF13 Silent p.T118T 0.22 TCGA-BR-8080-01 8 113421186 113421186 T C CSMD3 Missense_Mutation p.Q1824R 0.06 deleterious(0.05) possibly_damaging(0.842) TCGA-BR-8080-01 8 113599416 113599416 G A CSMD3 Missense_Mutation p.P1255L 0.05 deleterious(0) probably_damaging(0.998) TCGA-BR-8080-01 8 120429131 120429131 C T NOV Silent p.L78L 0.09 TCGA-BR-8080-01 8 13947940 13947940 A T SGCZ 3'UTR 0.04 TCGA-BR-8080-01 8 2832041 2832041 A T CSMD1 Missense_Mutation p.L2891H 0.21 probably_damaging(0.967) TCGA-BR-8080-01 8 52370223 52370223 A C PXDNL Missense_Mutation p.S273A 0.05 tolerated(0.19) benign(0.034) TCGA-BR-8080-01 8 68419089 68419089 C G CPA6 Missense_Mutation p.W190S 0.19 deleterious(0.04) possibly_damaging(0.458) TCGA-BR-8080-01 8 68995528 68995528 T A PREX2 Silent p.V644V 0.06 TCGA-BR-8080-01 8 69445301 69445301 A G C8orf34 Missense_Mutation p.D341G 0.06 deleterious(0.01) probably_damaging(0.975) TCGA-BR-8080-01 8 72754808 72754808 T G MSC 3'UTR 0.06 TCGA-BR-8080-01 8 75937820 75937820 T A CRISPLD1 Missense_Mutation p.H428Q 0.06 tolerated(0.17) benign(0.207) TCGA-BR-8080-01 8 79650848 79650848 G T IL7 Missense_Mutation p.A84D 0.08 deleterious(0) possibly_damaging(0.887) TCGA-BR-8080-01 9 107267259 107267259 C A OR13F1 Nonsense_Mutation p.S239* 0.10 TCGA-BR-8080-01 9 136507403 136507403 C T DBH Silent p.G187G 0.14 TCGA-BR-8080-01 9 137779269 137779269 C T FCN2 3'UTR 0.07 TCGA-BR-8080-01 9 138378506 138378506 C T PPP1R26 Missense_Mutation p.A717V 0.13 tolerated(0.22) benign(0.264) TCGA-BR-8080-01 9 139911417 139911417 C T ABCA2 Missense_Mutation p.V905M 0.08 tolerated(0.19) benign(0.063) TCGA-BR-8080-01 9 37746329 37746329 G T FRMPD1 Missense_Mutation p.D1434Y 0.13 deleterious(0) possibly_damaging(0.711) TCGA-BR-8080-01 9 82323081 82323081 C A TLE4 Silent p.R329R 0.08 TCGA-BR-8080-01 X 101395818 101395818 A G TCEAL6 Silent p.F162F 0.11 TCGA-BR-8080-01 X 102755054 102755054 T C RAB40A Missense_Mutation p.K211E 0.17 deleterious_low_confidence(0) possibly_damaging(0.816) TCGA-BR-8080-01 X 102864478 102864478 T C TCEAL3 Silent p.F162F 0.04 TCGA-BR-8080-01 X 111155645 111155645 T G TRPC5 Missense_Mutation p.Q258H 0.08 tolerated(0.45) possibly_damaging(0.533) TCGA-BR-8080-01 X 114142042 114142043 - G HTR2C 3'UTR 0.12 TCGA-BR-8080-01 X 142716880 142716880 C A SLITRK4 Missense_Mutation p.S682I 0.13 tolerated(0.18) benign(0.02) TCGA-BR-8080-01 X 147088343 147088343 T G FMR1NB Missense_Mutation p.C173W 0.11 deleterious(0) possibly_damaging(0.827) TCGA-BR-8080-01 X 150912264 150912264 A G CNGA2 Missense_Mutation p.K430R 0.22 tolerated(0.2) benign(0.039) TCGA-BR-8080-01 X 19410172 19410172 A C MAP3K15 Missense_Mutation p.F793L 0.10 deleterious(0) probably_damaging(0.969) TCGA-BR-8080-01 X 21393009 21393009 C T CNKSR2 5'UTR 0.07 TCGA-BR-8080-01 X 2826865 2826865 G A ARSD Silent p.S439S 0.17 TCGA-BR-8080-01 X 2826866 2826866 C T ARSD Missense_Mutation p.S439N 0.17 tolerated(0.52) benign(0.006) TCGA-BR-8080-01 X 31515045 31515045 T C DMD Missense_Mutation p.S2803G 0.19 benign(0.294) TCGA-BR-8080-01 X 34149532 34149532 G A FAM47A Silent p.D288D 0.11 TCGA-BR-8080-01 X 51150192 51150192 A C CXorf67 Missense_Mutation p.E108D 0.19 tolerated(0.49) benign(0.001) TCGA-BR-8080-01 X 55052271 55052271 C T ALAS2 Missense_Mutation p.A55T 0.10 tolerated(0.32) benign(0.023) TCGA-BR-8081-01 10 101147941 101147941 G A CNNM1 Missense_Mutation p.E853K 0.12 deleterious_low_confidence(0.01) benign(0.318) TCGA-BR-8081-01 10 101824970 101824970 G A CPN1 Missense_Mutation p.T245M 0.20 deleterious(0) probably_damaging(0.998) TCGA-BR-8081-01 10 102749148 102749148 G A C10orf2 Missense_Mutation p.R394H 0.12 deleterious(0) probably_damaging(0.999) TCGA-BR-8081-01 10 104183130 104183130 G A CUEDC2 3'UTR 0.13 TCGA-BR-8081-01 10 105154068 105154068 G A USMG5 5'UTR 0.20 TCGA-BR-8081-01 10 105178275 105178275 C A PDCD11 Missense_Mutation p.L664I 0.17 tolerated(0.3) benign(0.39) TCGA-BR-8081-01 10 116247743 116247743 A T ABLIM1 Missense_Mutation p.S339T 0.18 tolerated(0.22) benign(0.017) TCGA-BR-8081-01 10 121342098 121342098 T C TIAL1 Missense_Mutation p.N51S 0.11 tolerated_low_confidence(1) benign(0.002) TCGA-BR-8081-01 10 121429568 121429568 C T BAG3 Missense_Mutation p.A129V 0.06 tolerated(0.11) benign(0.061) TCGA-BR-8081-01 10 121691686 121691686 C T SEC23IP Nonsense_Mutation p.Q872* 0.12 TCGA-BR-8081-01 10 12288245 12288245 G A CDC123 Missense_Mutation p.G272D 0.11 tolerated(0.27) benign(0.001) TCGA-BR-8081-01 10 123842944 123842944 G A TACC2 Missense_Mutation p.C310Y 0.18 possibly_damaging(0.817) TCGA-BR-8081-01 10 126517968 126517969 - T FAM175B Frame_Shift_Ins p.D198* 0.09 TCGA-BR-8081-01 10 135233048 135233048 G A MTG1 Missense_Mutation p.A273T 0.19 deleterious(0) probably_damaging(0.919) TCGA-BR-8081-01 10 15130750 15130750 C T ACBD7 5'UTR 0.19 TCGA-BR-8081-01 10 17061870 17061870 C T CUBN Missense_Mutation p.R1377H 0.16 tolerated(0.31) benign(0) TCGA-BR-8081-01 10 22618490 22618490 A - BMI1 3'UTR 0.09 TCGA-BR-8081-01 10 23235188 23235188 A C ARMC3 Missense_Mutation p.K55T 0.16 deleterious(0) benign(0.282) TCGA-BR-8081-01 10 255984 255984 A G ZMYND11 Missense_Mutation p.E91G 0.14 deleterious(0) probably_damaging(0.949) TCGA-BR-8081-01 10 26385330 26385330 T - MYO3A Frame_Shift_Del p.Y530Tfs*13 0.24 TCGA-BR-8081-01 10 27294405 27294405 A T ANKRD26 3'UTR 0.17 TCGA-BR-8081-01 10 27311608 27311608 T C ANKRD26 Missense_Mutation p.N1365S 0.14 tolerated(0.07) benign(0.163) TCGA-BR-8081-01 10 29821496 29821496 C T SVIL Silent p.A600A 0.12 TCGA-BR-8081-01 10 3147337 3147337 G T PFKP Missense_Mutation p.M217I 0.17 deleterious(0) probably_damaging(0.993) TCGA-BR-8081-01 10 33018260 33018260 C T C10ORF68 Missense_Mutation p.T234M 0.20 deleterious(0.02) benign(0.004) TCGA-BR-8081-01 10 35299267 35299267 G A CUL2 Missense_Mutation p.S756L 0.17 tolerated(0.05) probably_damaging(0.986) TCGA-BR-8081-01 10 35896743 35896743 C T GJD4 Missense_Mutation p.A101V 0.14 tolerated(0.06) benign(0.096) TCGA-BR-8081-01 10 394598 394598 C T DIP2C Missense_Mutation p.V1072I 0.21 tolerated(0.11) benign(0.239) TCGA-BR-8081-01 10 51818917 51818917 T C RP11-324H6.5 RNA 0.20 TCGA-BR-8081-01 10 55582606 55582606 G A PCDH15 Missense_Mutation p.T1629I 0.17 tolerated_low_confidence(0.14) benign(0.002) TCGA-BR-8081-01 10 5777426 5777426 C A FAM208B Missense_Mutation p.P455H 0.17 deleterious(0.01) possibly_damaging(0.906) TCGA-BR-8081-01 10 60128572 60128572 T - UBE2D1 3'UTR 0.16 TCGA-BR-8081-01 10 61552466 61552466 C G CCDC6 3'UTR 0.18 TCGA-BR-8081-01 10 61833777 61833777 T C ANK3 Missense_Mutation p.K2288E 0.12 probably_damaging(0.956) TCGA-BR-8081-01 10 64403708 64403708 C T ZNF365 Intron 0.13 TCGA-BR-8081-01 10 64574120 64574120 A G EGR2 Missense_Mutation p.M93T 0.15 tolerated(0.8) possibly_damaging(0.599) TCGA-BR-8081-01 10 72299505 72299505 C - PALD1 Frame_Shift_Del p.R634Efs*61 0.19 TCGA-BR-8081-01 10 7798106 7798106 C A KIN Splice_Site p.X374_splice 0.26 TCGA-BR-8081-01 10 79614032 79614032 G A DLG5 Silent p.N211N 0.27 TCGA-BR-8081-01 10 82280141 82280141 G A TSPAN14 3'UTR 0.13 TCGA-BR-8081-01 10 91066903 91066903 A C IFIT2 Missense_Mutation p.E397A 0.17 deleterious(0.02) possibly_damaging(0.798) TCGA-BR-8081-01 10 92656136 92656136 G A RPP30 Silent p.A228A 0.18 TCGA-BR-8081-01 10 95076536 95076536 C T MYOF Missense_Mutation p.R1878Q 0.14 deleterious(0.01) probably_damaging(0.909) TCGA-BR-8081-01 11 1016540 1016543 GAAG - MUC6 Frame_Shift_Del p.F2087Yfs*27 0.20 TCGA-BR-8081-01 11 101834578 101834578 C T KIAA1377 Missense_Mutation p.P938S 0.14 tolerated(0.22) benign(0) TCGA-BR-8081-01 11 105929633 105929633 C T KBTBD3 Silent p.P64P 0.16 TCGA-BR-8081-01 11 108114816 108114817 - T ATM Frame_Shift_Ins p.S214Ffs*40 0.15 TCGA-BR-8081-01 11 108160475 108160475 G T ATM Missense_Mutation p.W1461C 0.18 deleterious(0) probably_damaging(0.991) TCGA-BR-8081-01 11 1099761 1099761 T C MUC2 Intron 0.17 TCGA-BR-8081-01 11 110035729 110035729 A G ZC3H12C Missense_Mutation p.Y640C 0.17 tolerated(0.18) probably_damaging(0.999) TCGA-BR-8081-01 11 110451319 110451319 C T ARHGAP20 Missense_Mutation p.G784D 0.10 tolerated_low_confidence(0.19) benign(0.005) TCGA-BR-8081-01 11 113699980 113699980 G A USP28 Missense_Mutation p.A333V 0.19 deleterious(0) probably_damaging(1) TCGA-BR-8081-01 11 117869725 117869725 A C IL10RA Missense_Mutation p.D369A 0.21 deleterious(0) probably_damaging(0.989) TCGA-BR-8081-01 11 118122995 118122995 T G MPZL3 Silent p.G5G 0.11 TCGA-BR-8081-01 11 118343010 118343010 C T KMT2A Missense_Mutation p.A379V 0.21 probably_damaging(0.97) TCGA-BR-8081-01 11 118405013 118405015 AAC - TMEM25 In_Frame_Del p.N325del 0.31 TCGA-BR-8081-01 11 118827661 118827661 C - UPK2 Frame_Shift_Del p.C51Vfs*10 0.14 TCGA-BR-8081-01 11 119185617 119185618 - G MCAM Frame_Shift_Ins p.Q109Pfs*45 0.16 TCGA-BR-8081-01 11 119212679 119212679 G T MFRP Missense_Mutation p.P468H 0.09 tolerated(0.05) probably_damaging(0.993) TCGA-BR-8081-01 11 120827494 120827494 C T GRIK4 Missense_Mutation p.T569M 0.14 deleterious(0) probably_damaging(0.98) TCGA-BR-8081-01 11 121016339 121016339 G A TECTA Missense_Mutation p.V1207M 0.12 deleterious(0.03) possibly_damaging(0.79) TCGA-BR-8081-01 11 122817342 122817342 G A C11orf63 Missense_Mutation p.V591I 0.19 tolerated(0.41) benign(0.003) TCGA-BR-8081-01 11 1251244 1251245 - G MUC5B Frame_Shift_Ins p.L413Afs*25 0.16 TCGA-BR-8081-01 11 126135176 126135176 G A SRPR Missense_Mutation p.T433I 0.16 deleterious(0) probably_damaging(0.982) TCGA-BR-8081-01 11 126314880 126314880 C T KIRREL3 Missense_Mutation p.V416I 0.14 deleterious(0.03) benign(0.088) TCGA-BR-8081-01 11 1269345 1269345 G T MUC5B Missense_Mutation p.Q3745H 0.12 unknown(0) TCGA-BR-8081-01 11 128391832 128391832 C T ETS1 Intron 0.08 TCGA-BR-8081-01 11 128842462 128842462 C T ARHGAP32 Silent p.T1299T 0.17 TCGA-BR-8081-01 11 27390555 27390555 G A LGR4 Missense_Mutation p.S572L 0.21 deleterious(0.01) benign(0.311) TCGA-BR-8081-01 11 32460527 32460527 A - WT1 5'Flank 0.19 TCGA-BR-8081-01 11 33362656 33362656 G A HIPK3 Missense_Mutation p.G586R 0.23 tolerated(0.25) possibly_damaging(0.874) TCGA-BR-8081-01 11 33565180 33565180 G T KIAA1549L Missense_Mutation p.A394S 0.15 deleterious_low_confidence(0.02) benign(0.006) TCGA-BR-8081-01 11 33565323 33565323 A G KIAA1549L Silent p.L441L 0.26 TCGA-BR-8081-01 11 33880859 33880859 G A LMO2 3'UTR 0.31 TCGA-BR-8081-01 11 46455113 46455113 G A AMBRA1 Nonsense_Mutation p.R873* 0.17 TCGA-BR-8081-01 11 46895077 46895077 G T LRP4 Missense_Mutation p.L1433M 0.10 deleterious(0.02) probably_damaging(0.975) TCGA-BR-8081-01 11 47444173 47444173 G A PSMC3 Missense_Mutation p.A279V 0.18 deleterious(0) benign(0.088) TCGA-BR-8081-01 11 47470379 47470379 C T RAPSN Silent p.L46L 0.22 TCGA-BR-8081-01 11 48149351 48149351 C T PTPRJ Silent p.D371D 0.26 TCGA-BR-8081-01 11 4945194 4945194 C T OR51G1 Missense_Mutation p.V126M 0.12 deleterious(0.02) benign(0.22) TCGA-BR-8081-01 11 502099 502099 C T RNH1 Missense_Mutation p.E22K 0.19 deleterious(0.03) benign(0.015) TCGA-BR-8081-01 11 55541171 55541171 C T OR5D13 Silent p.N86N 0.20 TCGA-BR-8081-01 11 558069 558069 G - C11orf35 Intron 0.23 TCGA-BR-8081-01 11 56185444 56185444 G A OR5R1 Missense_Mutation p.R89C 0.18 deleterious(0.02) benign(0.001) TCGA-BR-8081-01 11 56230791 56230791 G T OR5M9 Missense_Mutation p.F29L 0.18 deleterious(0.03) possibly_damaging(0.762) TCGA-BR-8081-01 11 59282922 59282922 C T OR4D9 Silent p.C179C 0.21 TCGA-BR-8081-01 11 598487 598487 C T PHRF1 Missense_Mutation p.R337W 0.22 deleterious(0.02) probably_damaging(0.993) TCGA-BR-8081-01 11 62414787 62414787 G A INTS5 Missense_Mutation p.P922L 0.04 deleterious(0) possibly_damaging(0.846) TCGA-BR-8081-01 11 64679671 64679671 C T ATG2A Missense_Mutation p.E325K 0.17 deleterious(0) possibly_damaging(0.504) TCGA-BR-8081-01 11 65480453 65480454 - C KAT5 Frame_Shift_Ins p.K105Qfs*9 0.11 TCGA-BR-8081-01 11 65545526 65545526 C T AP5B1 Missense_Mutation p.R813H 0.13 tolerated(0.32) benign(0.007) TCGA-BR-8081-01 11 66050763 66050763 C T CNIH2 Missense_Mutation p.A119V 0.12 deleterious(0) possibly_damaging(0.466) TCGA-BR-8081-01 11 67402652 67402652 C T TBX10 Silent p.R30R 0.22 TCGA-BR-8081-01 11 68338536 68338536 G A PPP6R3 Missense_Mutation p.R436Q 0.18 deleterious(0) possibly_damaging(0.874) TCGA-BR-8081-01 11 68748320 68748320 T G MRGPRD Missense_Mutation p.S46R 0.14 deleterious(0) possibly_damaging(0.882) TCGA-BR-8081-01 11 70266595 70266595 C T CTTN Nonsense_Mutation p.Q257* 0.25 TCGA-BR-8081-01 11 71906954 71906954 C T FOLR1 Silent p.C169C 0.06 TCGA-BR-8081-01 11 73106534 73106534 T C RELT Nonstop_Mutation p.*431Rext*4 0.19 TCGA-BR-8081-01 11 74717419 74717419 C T NEU3 Missense_Mutation p.T423I 0.15 tolerated(0.22) benign(0.003) TCGA-BR-8081-01 11 76062779 76062779 C T PRKRIR Missense_Mutation p.S472N 0.18 tolerated(0.16) benign(0.028) TCGA-BR-8081-01 11 76372210 76372210 G A LRRC32 Missense_Mutation p.R143W 0.22 tolerated(0.15) benign(0.002) TCGA-BR-8081-01 11 7694036 7694037 CT - CYB5R2 Frame_Shift_Del p.E7Afs*8 0.16 TCGA-BR-8081-01 11 77413116 77413116 T - RSF1 Frame_Shift_Del p.K386Nfs*6 0.16 TCGA-BR-8081-01 11 82989836 82989836 G A CCDC90B Missense_Mutation p.A86V 0.11 tolerated(0.24) benign(0.016) TCGA-BR-8081-01 11 89537259 89537259 G A TRIM49 Missense_Mutation p.R127C 0.21 tolerated(1) benign(0.001) TCGA-BR-8081-01 11 8953790 8953790 C A C11orf16 Missense_Mutation p.K22N 0.20 deleterious(0.05) possibly_damaging(0.837) TCGA-BR-8081-01 11 9161272 9161272 C T DENND5A Silent p.L1270L 0.12 TCGA-BR-8081-01 11 92258088 92258089 - T FAT3 Frame_Shift_Ins p.A1197Cfs*51 0.29 TCGA-BR-8081-01 11 92918965 92918965 C A SLC36A4 Missense_Mutation p.R24M 0.10 tolerated(0.05) benign(0.009) TCGA-BR-8081-01 11 93796776 93796776 C T HEPHL1 Missense_Mutation p.A173V 0.11 deleterious(0.01) probably_damaging(0.967) TCGA-BR-8081-01 12 105600965 105600966 TT - APPL2 Frame_Shift_Del p.K171Rfs*44 0.20 TCGA-BR-8081-01 12 106461214 106461214 G A NUAK1 Missense_Mutation p.P451L 0.23 deleterious(0.03) benign(0.032) TCGA-BR-8081-01 12 106786837 106786837 T C POLR3B Missense_Mutation p.I251T 0.15 deleterious(0) possibly_damaging(0.831) TCGA-BR-8081-01 12 10782235 10782235 G A STYK1 Nonsense_Mutation p.R164* 0.19 TCGA-BR-8081-01 12 108106078 108106078 C T PWP1 3'UTR 0.25 TCGA-BR-8081-01 12 109016933 109016933 A G SELPLG Missense_Mutation p.L400P 0.21 tolerated(0.05) possibly_damaging(0.523) TCGA-BR-8081-01 12 109192889 109192889 G A SSH1 Silent p.F412F 0.14 TCGA-BR-8081-01 12 109704115 109704115 G A ACACB Missense_Mutation p.R2442Q 0.14 deleterious(0.03) benign(0.023) TCGA-BR-8081-01 12 111348961 111348961 C T MYL2 Missense_Mutation p.A141T 0.10 tolerated(0.55) possibly_damaging(0.839) TCGA-BR-8081-01 12 112485518 112485518 G A NAA25 Nonsense_Mutation p.R653* 0.18 TCGA-BR-8081-01 12 117664550 117664550 G A NOS1 Silent p.G1248G 0.13 TCGA-BR-8081-01 12 122614587 122614587 G A MLXIP Missense_Mutation p.E280K 0.27 deleterious(0) probably_damaging(0.998) TCGA-BR-8081-01 12 122723199 122723199 G A VPS33A Nonsense_Mutation p.Q413* 0.09 TCGA-BR-8081-01 12 122845598 122845598 C T CLIP1 Missense_Mutation p.A305T 0.29 deleterious(0) probably_damaging(0.978) TCGA-BR-8081-01 12 130855769 130855769 T G PIWIL1 Silent p.S790S 0.19 TCGA-BR-8081-01 12 133215722 133215724 CTT - POLE In_Frame_Del p.K1847del 0.10 TCGA-BR-8081-01 12 133351739 133351739 G A GOLGA3 Silent p.G1377G 0.12 TCGA-BR-8081-01 12 13716277 13716277 G A GRIN2B Missense_Mutation p.R1299C 0.13 deleterious(0.01) probably_damaging(0.91) TCGA-BR-8081-01 12 14959221 14959221 C T SMCO3 Missense_Mutation p.A132T 0.07 tolerated(0.12) possibly_damaging(0.807) TCGA-BR-8081-01 12 29757135 29757135 G A TMTC1 Missense_Mutation p.A409V 0.10 deleterious(0) probably_damaging(0.997) TCGA-BR-8081-01 12 2997147 2997147 G A RHNO1 Missense_Mutation p.R80K 0.27 tolerated(0.35) benign(0.05) TCGA-BR-8081-01 12 31245812 31245812 C T DDX11 Silent p.Y425Y 0.09 TCGA-BR-8081-01 12 32446952 32446952 A G BICD1 Missense_Mutation p.R151G 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-BR-8081-01 12 32490545 32490545 G A BICD1 Missense_Mutation p.A789T 0.17 deleterious(0) probably_damaging(1) TCGA-BR-8081-01 12 32777996 32777996 G T FGD4 Missense_Mutation p.E543D 0.10 tolerated(0.11) benign(0.013) TCGA-BR-8081-01 12 39756911 39756911 G T KIF21A Silent p.L336L 0.15 TCGA-BR-8081-01 12 41966842 41966842 G A PDZRN4 Missense_Mutation p.R754H 0.15 tolerated(0.57) probably_damaging(0.912) TCGA-BR-8081-01 12 42854270 42854270 G A PRICKLE1 Missense_Mutation p.P613S 0.15 tolerated(0.33) benign(0.33) TCGA-BR-8081-01 12 45771877 45771877 A G ANO6 Silent p.A403A 0.16 TCGA-BR-8081-01 12 45822989 45822989 G T ANO6 Missense_Mutation p.K897N 0.17 tolerated(0.11) benign(0.266) TCGA-BR-8081-01 12 48547247 48547247 G A ASB8 Silent p.S11S 0.14 TCGA-BR-8081-01 12 49086828 49086828 G A CCNT1 Silent p.P723P 0.21 TCGA-BR-8081-01 12 49087188 49087188 G T CCNT1 Silent p.S603S 0.07 TCGA-BR-8081-01 12 49176653 49176653 C T ADCY6 Missense_Mutation p.A189T 0.24 tolerated(0.31) benign(0.002) TCGA-BR-8081-01 12 49444688 49444688 C T KMT2D Silent p.S926S 0.19 TCGA-BR-8081-01 12 49724484 49724484 C A TROAP Missense_Mutation p.P619H 0.09 deleterious(0.05) benign(0.022) TCGA-BR-8081-01 12 50146265 50146265 G A TMBIM6 Missense_Mutation p.D55N 0.17 tolerated_low_confidence(0.38) benign(0.005) TCGA-BR-8081-01 12 5021217 5021217 G A KCNA1 Missense_Mutation p.E225K 0.11 deleterious(0) probably_damaging(0.999) TCGA-BR-8081-01 12 50357276 50357276 T G AQP5 Missense_Mutation p.L122R 0.17 deleterious(0) possibly_damaging(0.809) TCGA-BR-8081-01 12 53453432 53453432 C T TENC1 Silent p.R679R 0.14 TCGA-BR-8081-01 12 53668729 53668729 A G ESPL1 Silent p.P545P 0.16 TCGA-BR-8081-01 12 55357624 55357624 A - TESPA1 Frame_Shift_Del p.F186Sfs*16 0.22 TCGA-BR-8081-01 12 56510435 56510436 TT A RPL41 5'UTR 0.17 TCGA-BR-8081-01 12 57592321 57592321 G A LRP1 Missense_Mutation p.V3182I 0.21 benign(0.061) TCGA-BR-8081-01 12 57626343 57626343 C T SHMT2 Silent p.Y234Y 0.15 TCGA-BR-8081-01 12 6120863 6120863 C T VWF Missense_Mutation p.R1921Q 0.22 tolerated(0.23) benign(0.004) TCGA-BR-8081-01 12 62687993 62687994 - A USP15 Frame_Shift_Ins p.Y44Ifs*5 0.10 TCGA-BR-8081-01 12 6703729 6703729 A G CHD4 Silent p.L737L 0.20 TCGA-BR-8081-01 12 6711546 6711546 T - CHD4 Frame_Shift_Del p.K73Rfs*129 0.19 TCGA-BR-8081-01 12 6729440 6729440 C T LPAR5 Silent p.T325T 0.19 TCGA-BR-8081-01 12 69250107 69250107 G A CPM 3'UTR 0.14 TCGA-BR-8081-01 12 69968091 69968091 C T FRS2 Nonsense_Mutation p.R295* 0.18 TCGA-BR-8081-01 12 7030885 7030885 C T ENO2 Missense_Mutation p.A336V 0.18 deleterious_low_confidence(0) possibly_damaging(0.89) TCGA-BR-8081-01 12 7075615 7075615 G A PHB2 Silent p.L280L 0.17 TCGA-BR-8081-01 12 83250837 83250837 G A TMTC2 Silent p.T44T 0.15 TCGA-BR-8081-01 12 8374554 8374554 G A FAM90A1 Missense_Mutation p.P420L 0.19 deleterious(0) benign(0.063) TCGA-BR-8081-01 12 85264301 85264301 G A SLC6A15 Missense_Mutation p.T484M 0.19 deleterious(0) probably_damaging(1) TCGA-BR-8081-01 12 8803134 8803134 G A MFAP5 Missense_Mutation p.P100L 0.14 deleterious(0) probably_damaging(1) TCGA-BR-8081-01 12 88478558 88478558 A G CEP290 Silent p.N1503N 0.15 TCGA-BR-8081-01 12 89745884 89745884 G A DUSP6 5'UTR 0.19 TCGA-BR-8081-01 12 8988128 8988128 A C A2ML1 Missense_Mutation p.Q170P 0.07 deleterious(0) probably_damaging(0.94) TCGA-BR-8081-01 12 90028814 90028814 T C ATP2B1 Silent p.V207V 0.12 TCGA-BR-8081-01 12 98927810 98927810 C A TMPO Missense_Mutation p.A592D 0.11 deleterious_low_confidence(0) possibly_damaging(0.602) TCGA-BR-8081-01 12 99102474 99102474 C T APAF1 Missense_Mutation p.R945C 0.22 tolerated(0.16) benign(0.002) TCGA-BR-8081-01 12 994303 994303 A G WNK1 Missense_Mutation p.T1445A 0.04 tolerated_low_confidence(0.41) benign(0.041) TCGA-BR-8081-01 13 108518597 108518597 G A FAM155A Silent p.A116A 0.29 TCGA-BR-8081-01 13 113818958 113818958 G A PROZ Missense_Mutation p.D191N 0.17 deleterious(0.01) possibly_damaging(0.67) TCGA-BR-8081-01 13 19751314 19751314 G A TUBA3C Missense_Mutation p.A270V 0.07 tolerated_low_confidence(0.55) benign(0.03) TCGA-BR-8081-01 13 29600969 29600969 G A MTUS2 Missense_Mutation p.G722R 0.33 deleterious(0) probably_damaging(1) TCGA-BR-8081-01 13 33628057 33628057 G T KL Missense_Mutation p.G325C 0.04 deleterious(0) probably_damaging(1) TCGA-BR-8081-01 13 36909272 36909272 A - SPG20 Frame_Shift_Del p.F232Lfs*2 0.29 TCGA-BR-8081-01 13 42144798 42144798 C T VWA8 Silent p.T1805T 0.15 TCGA-BR-8081-01 13 43181159 43181160 - C TNFSF11 3'UTR 0.32 TCGA-BR-8081-01 13 43544769 43544769 G A EPSTI1 Missense_Mutation p.R76W 0.24 deleterious(0) probably_damaging(1) TCGA-BR-8081-01 13 58207391 58207391 C T PCDH17 Silent p.N237N 0.29 TCGA-BR-8081-01 13 61986570 61986571 - A PCDH20 Frame_Shift_Ins p.L554Ffs*3 0.19 TCGA-BR-8081-01 13 76055542 76055542 T C TBC1D4 Missense_Mutation p.H121R 0.08 tolerated(0.49) probably_damaging(0.999) TCGA-BR-8081-01 13 88328684 88328684 G A SLITRK5 Silent p.R347R 0.41 TCGA-BR-8081-01 13 95726498 95726498 C T ABCC4 Missense_Mutation p.V963I 0.19 tolerated(0.13) benign(0.056) TCGA-BR-8081-01 13 99966382 99966382 T - UBAC2 Frame_Shift_Del p.Y142Tfs*23 0.13 TCGA-BR-8081-01 14 101496040 101496040 T - MIR494 RNA 0.27 TCGA-BR-8081-01 14 104216136 104216136 T - PPP1R13B Frame_Shift_Del p.I322Ffs*3 0.25 TCGA-BR-8081-01 14 104642480 104642480 G A KIF26A Missense_Mutation p.V1119I 0.33 tolerated(0.56) benign(0.004) TCGA-BR-8081-01 14 105407181 105407181 C T AHNAK2 Silent p.K4869K 0.20 TCGA-BR-8081-01 14 105413931 105413931 C A AHNAK2 Missense_Mutation p.Q2619H 0.20 benign(0.373) TCGA-BR-8081-01 14 105419812 105419812 T - AHNAK2 Frame_Shift_Del p.K659Rfs*5 0.12 TCGA-BR-8081-01 14 105936409 105936409 C T MTA1 Missense_Mutation p.R669C 0.44 deleterious(0) probably_damaging(0.99) TCGA-BR-8081-01 14 20215900 20215900 T G OR4Q3 Missense_Mutation p.L105R 0.13 deleterious(0.01) probably_damaging(0.963) TCGA-BR-8081-01 14 20344817 20344817 C T OR4K2 Missense_Mutation p.H131Y 0.17 deleterious(0.04) benign(0.001) TCGA-BR-8081-01 14 22521203 22521203 A C TRAV21 Missense_Mutation p.E75A 0.16 tolerated(0.06) benign(0.212) TCGA-BR-8081-01 14 23530554 23530554 C A ACIN1 Missense_Mutation p.R1184L 0.19 probably_damaging(0.987) TCGA-BR-8081-01 14 24652234 24652234 G - IPO4 Frame_Shift_Del p.P790Lfs*116 0.16 TCGA-BR-8081-01 14 24775286 24775286 C T CIDEB Missense_Mutation p.A132T 0.08 deleterious(0) probably_damaging(0.998) TCGA-BR-8081-01 14 32562345 32562346 - A ARHGAP5 Frame_Shift_Ins p.R826Kfs*21 0.11 TCGA-BR-8081-01 14 39815175 39815175 A T CTAGE5 Missense_Mutation p.R638S 0.23 deleterious(0.01) possibly_damaging(0.662) TCGA-BR-8081-01 14 45711523 45711523 T C MIS18BP1 Missense_Mutation p.E286G 0.19 tolerated(0.06) benign(0.237) TCGA-BR-8081-01 14 50666416 50666416 G A SOS2 Missense_Mutation p.A168V 0.15 deleterious(0.02) possibly_damaging(0.658) TCGA-BR-8081-01 14 52735102 52735102 G A PTGDR Silent p.E190E 0.11 TCGA-BR-8081-01 14 52781549 52781549 C T PTGER2 Missense_Mutation p.R95W 0.13 deleterious(0.02) benign(0.135) TCGA-BR-8081-01 14 53539354 53539354 C A DDHD1 Missense_Mutation p.M488I 0.14 deleterious(0) probably_damaging(0.941) TCGA-BR-8081-01 14 54896992 54896992 A - CNIH1 Frame_Shift_Del p.Y132Tfs*6 0.26 TCGA-BR-8081-01 14 59954419 59954419 G A JKAMP Missense_Mutation p.A42T 0.15 tolerated(0.51) benign(0.001) TCGA-BR-8081-01 14 64632037 64632037 G A SYNE2 Missense_Mutation p.R5505Q 0.17 benign(0.007) TCGA-BR-8081-01 14 69798192 69798192 C T GALNT16 Silent p.R234R 0.18 TCGA-BR-8081-01 14 71514590 71514590 A T PCNX Silent p.T1409T 0.17 TCGA-BR-8081-01 14 73959112 73959112 C T HEATR4 Intron 0.18 TCGA-BR-8081-01 14 74995322 74995322 G A LTBP2 Silent p.A744A 0.10 TCGA-BR-8081-01 14 75130503 75130503 T C AREL1 Missense_Mutation p.T798A 0.14 tolerated(0.14) probably_damaging(0.992) TCGA-BR-8081-01 14 75265533 75265533 A - YLPM1 Frame_Shift_Del p.M1180Cfs*27 0.10 TCGA-BR-8081-01 14 77948722 77948722 A G ISM2 Missense_Mutation p.W306R 0.23 deleterious(0.01) possibly_damaging(0.861) TCGA-BR-8081-01 14 86089442 86089442 C T FLRT2 Silent p.S528S 0.09 TCGA-BR-8081-01 14 88477180 88477180 A - GPR65 5'UTR 0.12 TCGA-BR-8081-01 14 88658750 88658750 T - KCNK10 Frame_Shift_Del p.K229Sfs*3 0.09 TCGA-BR-8081-01 14 91760652 91760652 C T CCDC88C Missense_Mutation p.R1326H 0.28 deleterious(0.01) benign(0.127) TCGA-BR-8081-01 14 92790234 92790234 G A SLC24A4 Silent p.P20P 0.31 TCGA-BR-8081-01 14 93404743 93404743 G A ITPK1 3'UTR 0.50 TCGA-BR-8081-01 14 94770841 94770841 G A SERPINA6 Missense_Mutation p.R378C 0.19 deleterious(0.01) possibly_damaging(0.782) TCGA-BR-8081-01 14 94772522 94772522 G T SERPINA6 Silent p.I306I 0.18 TCGA-BR-8081-01 14 95569709 95569709 G A DICER1 Missense_Mutation p.R1342C 0.18 deleterious(0) probably_damaging(0.997) TCGA-BR-8081-01 15 22369389 22369389 G T OR4M2 Missense_Mutation p.V272L 0.08 tolerated(0.28) possibly_damaging(0.52) TCGA-BR-8081-01 15 31202890 31202890 C A FAN1 Silent p.T483T 0.15 TCGA-BR-8081-01 15 33194232 33194232 A G FMN1 Silent p.H906H 0.17 TCGA-BR-8081-01 15 34030749 34030749 G A RYR3 Silent p.T2538T 0.15 TCGA-BR-8081-01 15 35530067 35530067 G A ANP32AP1 RNA 0.29 TCGA-BR-8081-01 15 40708280 40708280 A G IVD Missense_Mutation p.M325V 0.32 tolerated(0.31) possibly_damaging(0.498) TCGA-BR-8081-01 15 40912959 40912959 T A CASC5 Nonsense_Mutation p.L192* 0.17 TCGA-BR-8081-01 15 41145818 41145818 G A SPINT1 Silent p.Q245Q 0.11 TCGA-BR-8081-01 15 42138489 42138489 G T PLA2G4B Missense_Mutation p.W794C 0.18 tolerated(0.11) benign(0.394) TCGA-BR-8081-01 15 42211660 42211660 G A EHD4 Silent p.A224A 0.10 TCGA-BR-8081-01 15 42743852 42743852 A G ZNF106 Silent p.G183G 0.14 TCGA-BR-8081-01 15 43820988 43820988 T C MAP1A Silent p.T2439T 0.30 TCGA-BR-8081-01 15 45803424 45803426 GTC - SLC30A4 In_Frame_Del p.D150del 0.13 TCGA-BR-8081-01 15 48435038 48435038 A T MYEF2 3'UTR 0.25 TCGA-BR-8081-01 15 52161500 52161500 A T TMOD3 Silent p.S71S 0.13 TCGA-BR-8081-01 15 53049700 53049700 T - ONECUT1 3'UTR 0.16 TCGA-BR-8081-01 15 53049924 53049924 C T ONECUT1 Missense_Mutation p.R409H 0.14 deleterious(0) probably_damaging(1) TCGA-BR-8081-01 15 53049957 53049957 C T ONECUT1 Missense_Mutation p.R398Q 0.13 deleterious(0) probably_damaging(0.996) TCGA-BR-8081-01 15 55912281 55912281 G A PRTG Missense_Mutation p.R1128W 0.18 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-BR-8081-01 15 60297516 60297516 G A FOXB1 Silent p.A118A 0.22 TCGA-BR-8081-01 15 60641281 60641281 T A ANXA2 Missense_Mutation p.Y336F 0.12 tolerated(0.69) benign(0.004) TCGA-BR-8081-01 15 62208112 62208112 T - VPS13C Frame_Shift_Del p.N2722Tfs*27 0.12 TCGA-BR-8081-01 15 63984660 63984660 G T HERC1 Missense_Mutation p.P1927Q 0.11 probably_damaging(0.966) TCGA-BR-8081-01 15 64686305 64686305 A - TRIP4 Frame_Shift_Del p.D90Mfs*4 0.19 TCGA-BR-8081-01 15 65793059 65793059 C T DPP8 Missense_Mutation p.R160H 0.15 deleterious(0) probably_damaging(0.996) TCGA-BR-8081-01 15 69347808 69347808 C T NOX5 Missense_Mutation p.R712C 0.14 deleterious(0) probably_damaging(0.982) TCGA-BR-8081-01 15 74702973 74702973 C A SEMA7A Missense_Mutation p.V665F 0.15 deleterious_low_confidence(0) unknown(0) TCGA-BR-8081-01 15 80215370 80215370 C A C15orf37 Silent p.A85A 0.23 TCGA-BR-8081-01 15 81229194 81229194 C T KIAA1199 Silent p.A1063A 0.11 TCGA-BR-8081-01 15 81598461 81598462 CT - IL16 Frame_Shift_Del p.S1212Cfs*9 0.14 TCGA-BR-8081-01 15 84651707 84651707 C T ADAMTSL3 Silent p.T1109T 0.11 TCGA-BR-8081-01 15 89864210 89864210 C T POLG Missense_Mutation p.G923D 0.14 deleterious(0) probably_damaging(1) TCGA-BR-8081-01 15 90039795 90039795 G T RHCG 5'UTR 0.33 TCGA-BR-8081-01 15 90171812 90171812 G - KIF7 Frame_Shift_Del p.E1291Rfs*3 0.16 TCGA-BR-8081-01 15 91432867 91432867 G A FES Splice_Site p.X309_splice 0.22 TCGA-BR-8081-01 16 10861921 10861921 G T TVP23A 3'UTR 0.19 TCGA-BR-8081-01 16 1257285 1257285 A G CACNA1H Missense_Mutation p.Q973R 0.24 deleterious(0) probably_damaging(0.994) TCGA-BR-8081-01 16 14341277 14341277 G A MKL2 Intron 0.22 TCGA-BR-8081-01 16 14932348 14932348 G T NOMO1 Missense_Mutation p.D84Y 0.13 deleterious(0) probably_damaging(0.987) TCGA-BR-8081-01 16 1616233 1616233 G A IFT140 Silent p.T610T 0.20 TCGA-BR-8081-01 16 1841073 1841073 A G IGFALS Missense_Mutation p.L487P 0.40 deleterious(0) probably_damaging(0.997) TCGA-BR-8081-01 16 20548586 20548586 C T ACSM2B Silent p.A576A 0.15 TCGA-BR-8081-01 16 2090230 2090230 G A NTHL1 Missense_Mutation p.T240M 0.06 deleterious(0) probably_damaging(0.994) TCGA-BR-8081-01 16 21222918 21222918 T - ZP2 5'UTR 0.18 TCGA-BR-8081-01 16 2124276 2124276 T C TSC2 Missense_Mutation p.C811R 0.18 deleterious(0) probably_damaging(0.99) TCGA-BR-8081-01 16 21278978 21278978 C T CRYM Silent p.S190S 0.10 TCGA-BR-8081-01 16 2159842 2159842 G T PKD1 Missense_Mutation p.L1776M 0.12 benign(0.142) TCGA-BR-8081-01 16 2162823 2162823 C T PKD1 Missense_Mutation p.V1043M 0.15 probably_damaging(0.999) TCGA-BR-8081-01 16 2231518 2231518 G T CASKIN1 Silent p.P617P 0.19 TCGA-BR-8081-01 16 2285285 2285285 C T E4F1 Silent p.I689I 0.18 TCGA-BR-8081-01 16 23505687 23505687 C T GGA2 Silent p.A63A 0.15 TCGA-BR-8081-01 16 23544081 23544081 G T EARS2 Missense_Mutation p.Q322K 0.12 tolerated(0.15) possibly_damaging(0.758) TCGA-BR-8081-01 16 27497443 27497443 G A GTF3C1 Missense_Mutation p.R1245C 0.15 deleterious(0) probably_damaging(0.991) TCGA-BR-8081-01 16 29825536 29825536 T C PRRT2 Intron 0.17 TCGA-BR-8081-01 16 30366100 30366100 T - CD2BP2 Intron 0.13 TCGA-BR-8081-01 16 30409299 30409299 G - ZNF48 Frame_Shift_Del p.E245Sfs*47 0.14 TCGA-BR-8081-01 16 30410362 30410362 G A ZNF48 Silent p.T597T 0.19 TCGA-BR-8081-01 16 30680911 30680911 C - FBRS Frame_Shift_Del p.R965Gfs*41 0.17 TCGA-BR-8081-01 16 30745021 30745022 TG - SRCAP Frame_Shift_Del p.V2133Cfs*4 0.20 TCGA-BR-8081-01 16 30768881 30768881 G A C16orf93 Silent p.S304S 0.13 TCGA-BR-8081-01 16 30794106 30794106 C T ZNF629 Missense_Mutation p.V515M 0.13 tolerated(0.1) probably_damaging(0.919) TCGA-BR-8081-01 16 30982826 30982826 G A SETD1A Silent p.S1048S 0.17 TCGA-BR-8081-01 16 3170202 3170202 G A ZNF205 Missense_Mutation p.S514N 0.27 tolerated(0.06) probably_damaging(0.926) TCGA-BR-8081-01 16 3187610 3187610 C T ZNF213 Missense_Mutation p.P110L 0.10 tolerated(0.22) benign(0.151) TCGA-BR-8081-01 16 332056 332056 G A ARHGDIG Silent p.R95R 0.09 TCGA-BR-8081-01 16 3740886 3740886 G A TRAP1 Silent p.T63T 0.18 TCGA-BR-8081-01 16 3823777 3823777 G A CREBBP Missense_Mutation p.P813L 0.21 possibly_damaging(0.782) TCGA-BR-8081-01 16 3824615 3824616 - G CREBBP Frame_Shift_Ins p.M747Nfs*85 0.13 TCGA-BR-8081-01 16 49764857 49764857 G A ZNF423 Silent p.C34C 0.15 TCGA-BR-8081-01 16 50263298 50263298 C T PAPD5 3'UTR 0.16 TCGA-BR-8081-01 16 50813710 50813710 A G CYLD Missense_Mutation p.K425E 0.19 tolerated(0.07) probably_damaging(0.986) TCGA-BR-8081-01 16 53276823 53276823 T A CHD9 Nonsense_Mutation p.C983* 0.17 TCGA-BR-8081-01 16 56485037 56485037 C T NUDT21 Silent p.Q26Q 0.17 TCGA-BR-8081-01 16 56864565 56864565 G A NUP93 Nonsense_Mutation p.W351* 0.19 TCGA-BR-8081-01 16 56906652 56906652 C T SLC12A3 Missense_Mutation p.S350L 0.19 deleterious(0.02) benign(0.171) TCGA-BR-8081-01 16 57394460 57394460 G T CCL22 Missense_Mutation p.R62M 0.27 deleterious(0.03) possibly_damaging(0.695) TCGA-BR-8081-01 16 57473215 57473217 AAT - CIAPIN1 In_Frame_Del p.I63del 0.19 TCGA-BR-8081-01 16 57789377 57789377 C T KATNB1 Missense_Mutation p.R513W 0.10 tolerated(0.09) benign(0.054) TCGA-BR-8081-01 16 58019155 58019155 T C TEPP Missense_Mutation p.V224A 0.16 tolerated(0.1) benign(0.228) TCGA-BR-8081-01 16 67197644 67197644 C T FBXL8 Missense_Mutation p.A349V 0.21 tolerated(0.19) possibly_damaging(0.75) TCGA-BR-8081-01 16 67645338 67645339 - A CTCF Frame_Shift_Ins p.T204Nfs*26 0.14 TCGA-BR-8081-01 16 67691945 67691945 G A ACD Missense_Mutation p.P470S 0.17 tolerated(0.09) benign(0.005) TCGA-BR-8081-01 16 67699037 67699037 C T ENKD1 Silent p.L105L 0.13 TCGA-BR-8081-01 16 67701280 67701280 G A C16orf86 Missense_Mutation p.A62T 0.33 tolerated(0.64) possibly_damaging(0.695) TCGA-BR-8081-01 16 67762448 67762448 G - RANBP10 Intron 0.16 TCGA-BR-8081-01 16 67918083 67918083 G A EDC4 3'UTR 0.27 TCGA-BR-8081-01 16 682785 682785 C T WFIKKN1 Silent p.S125S 0.12 TCGA-BR-8081-01 16 69334794 69334794 G A SNTB2 Silent p.S530S 0.21 TCGA-BR-8081-01 16 71689196 71689196 C T PHLPP2 Silent p.Q844Q 0.05 TCGA-BR-8081-01 16 71779115 71779115 G A AP1G1 Missense_Mutation p.A647V 0.16 tolerated(0.21) benign(0.005) TCGA-BR-8081-01 16 731711 731711 G A JMJD8 3'UTR 0.18 TCGA-BR-8081-01 16 81078429 81078429 G A ATMIN Missense_Mutation p.G776R 0.27 deleterious(0) probably_damaging(0.999) TCGA-BR-8081-01 16 814677 814677 C - MSLN Frame_Shift_Del p.E113Rfs*65 0.14 TCGA-BR-8081-01 16 83378583 83378583 C T CDH13 Silent p.I298I 0.14 TCGA-BR-8081-01 16 86544715 86544715 G A FOXF1 Silent p.S180S 0.16 TCGA-BR-8081-01 16 86582174 86582174 T - MTHFSD Frame_Shift_Del p.T83Hfs*9 0.19 TCGA-BR-8081-01 17 10258072 10258072 G A MYH13 Silent p.F310F 0.15 TCGA-BR-8081-01 17 10296236 10296236 G A MYH8 Missense_Mutation p.T1792M 0.13 deleterious(0.02) possibly_damaging(0.604) TCGA-BR-8081-01 17 10404747 10404747 G A MYH1 Missense_Mutation p.R1140C 0.12 deleterious(0.03) probably_damaging(1) TCGA-BR-8081-01 17 10441021 10441021 G A MYH2 Silent p.F516F 0.17 TCGA-BR-8081-01 17 11775053 11775053 C T DNAH9 Missense_Mutation p.R3398W 0.18 probably_damaging(1) TCGA-BR-8081-01 17 15212047 15212047 T C TEKT3 Missense_Mutation p.Q397R 0.16 deleterious(0) possibly_damaging(0.864) TCGA-BR-8081-01 17 17412839 17412839 T C PEMT Missense_Mutation p.K163E 0.06 deleterious(0) possibly_damaging(0.513) TCGA-BR-8081-01 17 17788064 17788064 G A TOM1L2 Nonsense_Mutation p.R129* 0.19 TCGA-BR-8081-01 17 18058634 18058634 G A MYO15A Missense_Mutation p.V2783M 0.15 unknown(0) TCGA-BR-8081-01 17 20109123 20109123 C A SPECC1 Silent p.A587A 0.15 TCGA-BR-8081-01 17 20217329 20217330 AG - SPECC1 Frame_Shift_Del p.S1054Cfs*13 0.15 TCGA-BR-8081-01 17 20354904 20354904 G A LGALS9B Missense_Mutation p.R271C 0.12 deleterious(0.03) probably_damaging(1) TCGA-BR-8081-01 17 20805631 20805631 G A RP11-344E13.3 RNA 0.26 TCGA-BR-8081-01 17 21087756 21087756 G A DHRS7B Missense_Mutation p.S200N 0.24 deleterious(0) possibly_damaging(0.827) TCGA-BR-8081-01 17 21825448 21825448 C T FAM27L RNA 0.19 TCGA-BR-8081-01 17 2202634 2202634 C T SMG6 Silent p.T471T 0.14 TCGA-BR-8081-01 17 26680011 26680011 G T POLDIP2 Silent p.P182P 0.14 TCGA-BR-8081-01 17 27287983 27287983 C T SEZ6 Missense_Mutation p.G417S 0.15 deleterious(0) probably_damaging(0.959) TCGA-BR-8081-01 17 27889934 27889934 G T ABHD15 Missense_Mutation p.P351H 0.17 deleterious(0) probably_damaging(1) TCGA-BR-8081-01 17 27994231 27994231 G A SSH2 Missense_Mutation p.R247C 0.13 deleterious(0.02) probably_damaging(1) TCGA-BR-8081-01 17 32957032 32957033 AG - TMEM132E Frame_Shift_Del p.E359Dfs*39 0.12 TCGA-BR-8081-01 17 34077256 34077256 C T GAS2L2 Missense_Mutation p.R156H 0.18 deleterious(0) probably_damaging(0.984) TCGA-BR-8081-01 17 35478397 35478397 C T ACACA Missense_Mutation p.G2052S 0.20 deleterious(0) probably_damaging(0.999) TCGA-BR-8081-01 17 35614709 35614709 G A ACACA Missense_Mutation p.A581V 0.14 tolerated(0.05) probably_damaging(0.994) TCGA-BR-8081-01 17 37826401 37826401 C T PNMT Missense_Mutation p.T203M 0.27 deleterious(0.02) probably_damaging(0.933) TCGA-BR-8081-01 17 38183270 38183270 C T MED24 Silent p.S516S 0.17 TCGA-BR-8081-01 17 3850715 3850715 C T ATP2A3 Silent p.T355T 0.24 TCGA-BR-8081-01 17 3854611 3854611 C A ATP2A3 Missense_Mutation p.D133Y 0.17 deleterious(0) possibly_damaging(0.86) TCGA-BR-8081-01 17 39767342 39767342 A G KRT16 Silent p.A304A 0.15 TCGA-BR-8081-01 17 42141192 42141192 G - LSM12 Frame_Shift_Del p.L79* 0.15 TCGA-BR-8081-01 17 42165936 42165936 G A HDAC5 Missense_Mutation p.T474M 0.17 tolerated(0.24) probably_damaging(0.969) TCGA-BR-8081-01 17 42513884 42513884 T C GPATCH8 Missense_Mutation p.K75E 0.12 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BR-8081-01 17 42635443 42635443 T C FZD2 Silent p.G129G 0.07 TCGA-BR-8081-01 17 43196222 43196222 G A PLCD3 Silent p.R291R 0.11 TCGA-BR-8081-01 17 43221001 43221001 G T ACBD4 Missense_Mutation p.R340M 0.15 deleterious_low_confidence(0) probably_damaging(0.919) TCGA-BR-8081-01 17 43321564 43321564 G A FMNL1 Missense_Mutation p.A824T 0.33 deleterious(0) probably_damaging(0.999) TCGA-BR-8081-01 17 4446270 4446270 G A MYBBP1A Missense_Mutation p.H944Y 0.15 tolerated(0.05) benign(0.017) TCGA-BR-8081-01 17 4576294 4576294 C T PELP1 Silent p.P664P 0.15 TCGA-BR-8081-01 17 4647919 4647919 G T ZMYND15 Splice_Site p.X562_splice 0.23 TCGA-BR-8081-01 17 48072218 48072218 C T DLX3 Missense_Mutation p.D49N 0.12 tolerated(0.16) benign(0.206) TCGA-BR-8081-01 17 4875560 4875560 G A CAMTA2 Silent p.D948D 0.17 TCGA-BR-8081-01 17 5314064 5314064 T C NUP88 Missense_Mutation p.I213M 0.07 tolerated(0.11) benign(0.109) TCGA-BR-8081-01 17 54921519 54921519 A - DGKE Frame_Shift_Del p.T204Qfs*6 0.24 TCGA-BR-8081-01 17 56329565 56329565 C T LPO Missense_Mutation p.A268V 0.11 tolerated(0.23) benign(0) TCGA-BR-8081-01 17 56429378 56429378 C - SUPT4H1 Intron 0.12 TCGA-BR-8081-01 17 56435590 56435591 - C RNF43 Frame_Shift_Ins p.D516Gfs*10 0.16 TCGA-BR-8081-01 17 56585898 56585898 G A MTMR4 Missense_Mutation p.A161V 0.14 tolerated(0.52) benign(0.011) TCGA-BR-8081-01 17 57676787 57676787 A G DHX40 Silent p.L583L 0.12 TCGA-BR-8081-01 17 57679954 57679954 C T DHX40 Silent p.G626G 0.15 TCGA-BR-8081-01 17 58786631 58786631 C T BCAS3 Missense_Mutation p.P89L 0.08 deleterious(0) benign(0.31) TCGA-BR-8081-01 17 61573866 61573866 G A ACE Silent p.G1164G 0.18 TCGA-BR-8081-01 17 62788490 62788490 G A PLEKHM1P RNA 0.12 TCGA-BR-8081-01 17 650715 650715 G A GEMIN4 Silent p.L190L 0.04 TCGA-BR-8081-01 17 65353654 65353655 AG - PSMD12 Frame_Shift_Del p.L50Gfs*26 0.14 TCGA-BR-8081-01 17 65720271 65720271 C T NOL11 Missense_Mutation p.A209V 0.11 deleterious(0.03) benign(0.086) TCGA-BR-8081-01 17 65942195 65942195 G T BPTF Missense_Mutation p.Q2457H 0.23 probably_damaging(0.989) TCGA-BR-8081-01 17 7158035 7158035 G A ELP5 Missense_Mutation p.D124N 0.14 deleterious(0) probably_damaging(0.987) TCGA-BR-8081-01 17 7186563 7186563 G T SLC2A4 Splice_Site p.X12_splice 0.21 TCGA-BR-8081-01 17 72588709 72588709 C T C17orf77 Missense_Mutation p.T175M 0.12 deleterious_low_confidence(0) possibly_damaging(0.897) TCGA-BR-8081-01 17 72791152 72791152 G - TMEM104 Frame_Shift_Del p.V145Sfs*30 0.17 TCGA-BR-8081-01 17 7319189 7319189 C T NLGN2 Missense_Mutation p.A466V 0.15 tolerated(0.45) probably_damaging(0.993) TCGA-BR-8081-01 17 73235131 73235131 T G GGA3 Missense_Mutation p.N605T 0.26 deleterious(0) possibly_damaging(0.656) TCGA-BR-8081-01 17 73237561 73237561 A G GGA3 Missense_Mutation p.V289A 0.13 tolerated(0.16) benign(0.383) TCGA-BR-8081-01 17 7351982 7351982 G A CHRNB1 Missense_Mutation p.R232H 0.14 tolerated(0.68) benign(0.002) TCGA-BR-8081-01 17 73748326 73748326 C T ITGB4 Missense_Mutation p.R1289W 0.21 deleterious(0) probably_damaging(0.998) TCGA-BR-8081-01 17 73922938 73922938 C A FBF1 Nonsense_Mutation p.G152* 0.29 TCGA-BR-8081-01 17 74004912 74004914 CTC - EVPL In_Frame_Del p.E1458del 0.16 TCGA-BR-8081-01 17 74071298 74071298 A G GALR2 Missense_Mutation p.S112G 0.18 deleterious(0.01) possibly_damaging(0.859) TCGA-BR-8081-01 17 74475291 74475291 C T RHBDF2 Missense_Mutation p.S143N 0.21 deleterious(0.01) possibly_damaging(0.7) TCGA-BR-8081-01 17 7577036 7577036 G - TP53 Frame_Shift_Del p.P301Qfs*44 0.12 TCGA-BR-8081-01 17 76203090 76203090 T G AFMID 3'UTR 0.17 TCGA-BR-8081-01 17 76970808 76970808 C T LGALS3BP Missense_Mutation p.C113Y 0.32 deleterious(0) probably_damaging(1) TCGA-BR-8081-01 17 7760760 7760760 T C LSMD1 5'UTR 0.15 TCGA-BR-8081-01 17 78345759 78345759 T C RNF213 Missense_Mutation p.Y4171H 0.19 probably_damaging(0.999) TCGA-BR-8081-01 17 7852792 7852792 G A CNTROB Silent p.P914P 0.14 TCGA-BR-8081-01 17 8215445 8215445 G A ARHGEF15 Missense_Mutation p.A30T 0.12 tolerated_low_confidence(0.18) benign(0.002) TCGA-BR-8081-01 17 8790929 8790929 C T PIK3R5 Missense_Mutation p.R563Q 0.23 deleterious(0) possibly_damaging(0.906) TCGA-BR-8081-01 18 12951893 12951893 G A SEH1L Missense_Mutation p.A51T 0.17 tolerated(0.22) possibly_damaging(0.668) TCGA-BR-8081-01 18 22806905 22806905 T C ZNF521 Missense_Mutation p.Y326C 0.11 deleterious(0) probably_damaging(0.999) TCGA-BR-8081-01 18 2567227 2567227 A - METTL4 5'UTR 0.19 TCGA-BR-8081-01 18 2700849 2700849 C T SMCHD1 Missense_Mutation p.T527M 0.14 deleterious(0) probably_damaging(0.999) TCGA-BR-8081-01 18 33243730 33243730 C T GALNT1 Missense_Mutation p.A93V 0.43 deleterious(0.04) possibly_damaging(0.641) TCGA-BR-8081-01 18 3879724 3879724 G A DLGAP1 Silent p.R115R 0.23 TCGA-BR-8081-01 18 43253755 43253755 C T SLC14A2 Nonsense_Mutation p.Q829* 0.11 TCGA-BR-8081-01 18 43795786 43795786 C A C18orf25 5'UTR 0.13 TCGA-BR-8081-01 18 50936877 50936877 G A DCC Missense_Mutation p.M997I 0.26 tolerated(1) benign(0.006) TCGA-BR-8081-01 18 61306894 61306894 T C SERPINB4 Missense_Mutation p.K196E 0.28 tolerated(0.34) benign(0.002) TCGA-BR-8081-01 18 63547708 63547708 A G CDH7 Missense_Mutation p.I646V 0.17 tolerated(0.94) benign(0.014) TCGA-BR-8081-01 18 64235727 64235727 G A CDH19 Missense_Mutation p.S139L 0.15 tolerated(0.08) benign(0.011) TCGA-BR-8081-01 18 70450955 70450955 G A NETO1 Nonsense_Mutation p.R276* 0.14 TCGA-BR-8081-01 18 74729219 74729219 C T MBP Missense_Mutation p.A49T 0.10 deleterious_low_confidence(0.02) possibly_damaging(0.691) TCGA-BR-8081-01 19 11038348 11038348 G T YIPF2 Silent p.T79T 0.11 TCGA-BR-8081-01 19 11138595 11138595 G A SMARCA4 Silent p.A1117A 0.19 TCGA-BR-8081-01 19 11280823 11280823 G A KANK2 Silent p.D779D 0.15 TCGA-BR-8081-01 19 12638030 12638031 TT - ZNF564 Frame_Shift_Del p.H299Yfs*3 0.09 TCGA-BR-8081-01 19 12774530 12774530 C T MAN2B1 Silent p.A250A 0.22 TCGA-BR-8081-01 19 12985409 12985409 T C MAST1 Missense_Mutation p.W1480R 0.17 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-BR-8081-01 19 14211688 14211688 G A PRKACA Silent p.Y123Y 0.13 TCGA-BR-8081-01 19 14574680 14574680 C T PKN1 Silent p.V518V 0.20 TCGA-BR-8081-01 19 14854579 14854579 G A EMR2 Missense_Mutation p.A734V 0.08 deleterious(0.01) possibly_damaging(0.902) TCGA-BR-8081-01 19 15079275 15079275 G A SLC1A6 Missense_Mutation p.R130W 0.39 tolerated(0.07) possibly_damaging(0.767) TCGA-BR-8081-01 19 15383721 15383721 G A BRD4 Nonsense_Mutation p.Q64* 0.21 TCGA-BR-8081-01 19 15752261 15752261 G A CYP4F3 Nonsense_Mutation p.W12* 0.16 TCGA-BR-8081-01 19 16976446 16976446 G A SIN3B Missense_Mutation p.V569I 0.29 tolerated(0.72) benign(0.016) TCGA-BR-8081-01 19 17361173 17361173 C T USHBP1 Missense_Mutation p.R658H 0.18 tolerated(0.42) benign(0.23) TCGA-BR-8081-01 19 18277076 18277076 G A PIK3R2 Missense_Mutation p.R508H 0.11 deleterious(0) benign(0.004) TCGA-BR-8081-01 19 18376403 18376403 C T KIAA1683 Silent p.V649V 0.18 TCGA-BR-8081-01 19 18899035 18899035 C - COMP Frame_Shift_Del p.V321Sfs*83 0.17 TCGA-BR-8081-01 19 19431805 19431805 T C MAU2 Missense_Mutation p.L46P 0.20 tolerated(0.29) possibly_damaging(0.894) TCGA-BR-8081-01 19 2813169 2813169 C T THOP1 Silent p.S655S 0.31 TCGA-BR-8081-01 19 3119273 3119273 G A GNA11 Missense_Mutation p.V269I 0.09 tolerated(1) benign(0.007) TCGA-BR-8081-01 19 327209 327209 C T MIER2 Silent p.T139T 0.17 TCGA-BR-8081-01 19 33493301 33493301 C G RHPN2 Missense_Mutation p.E319D 0.16 tolerated(0.47) benign(0.11) TCGA-BR-8081-01 19 33697253 33697253 G A LRP3 Missense_Mutation p.R526H 0.23 deleterious(0) probably_damaging(0.991) TCGA-BR-8081-01 19 34297878 34297878 G A KCTD15 Missense_Mutation p.R118Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-BR-8081-01 19 34302307 34302307 C T KCTD15 Silent p.I181I 0.24 TCGA-BR-8081-01 19 35719411 35719411 C G FAM187B Missense_Mutation p.G58A 0.16 tolerated(0.62) benign(0.057) TCGA-BR-8081-01 19 36229305 36229305 C - KMT2B Frame_Shift_Del p.H2665Qfs*73 0.21 TCGA-BR-8081-01 19 36435744 36435744 C T LRFN3 Silent p.P570P 0.17 TCGA-BR-8081-01 19 3748014 3748014 G A TJP3 Missense_Mutation p.V858M 0.27 deleterious(0.01) probably_damaging(0.981) TCGA-BR-8081-01 19 37618888 37618888 A - ZNF420 Frame_Shift_Del p.K333Nfs*18 0.13 TCGA-BR-8081-01 19 38028433 38028433 C T ZNF793 Silent p.A291A 0.09 TCGA-BR-8081-01 19 40877625 40877625 C T PLD3 Nonsense_Mutation p.R242* 0.19 TCGA-BR-8081-01 19 4117450 4117450 C T MAP2K2 Silent p.Q90Q 0.16 TCGA-BR-8081-01 19 41188832 41188832 G A NUMBL Silent p.H97H 0.18 TCGA-BR-8081-01 19 41386388 41386388 C T CYP2A7 Silent p.T163T 0.15 TCGA-BR-8081-01 19 42873057 42873057 T C MEGF8 Missense_Mutation p.C2115R 0.06 deleterious(0) probably_damaging(1) TCGA-BR-8081-01 19 4357406 4357406 G A MPND Missense_Mutation p.A385T 0.21 deleterious(0.01) benign(0.277) TCGA-BR-8081-01 19 43772054 43772054 G A PSG9 Silent p.N104N 0.19 TCGA-BR-8081-01 19 45411139 45411139 C T APOE Missense_Mutation p.R56C 0.17 deleterious(0) possibly_damaging(0.817) TCGA-BR-8081-01 19 45543570 45543570 G A CLASRP Splice_Site p.X33_splice 0.25 TCGA-BR-8081-01 19 46180981 46180981 A G GIPR Missense_Mutation p.N290D 0.11 deleterious(0) probably_damaging(0.987) TCGA-BR-8081-01 19 46998569 46998569 G A PNMAL2 Nonsense_Mutation p.R52* 0.17 TCGA-BR-8081-01 19 47425354 47425354 G A ARHGAP35 Missense_Mutation p.S1141N 0.15 tolerated(0.48) benign(0.005) TCGA-BR-8081-01 19 47572412 47572412 C G ZC3H4 Missense_Mutation p.E779Q 0.16 unknown(0) TCGA-BR-8081-01 19 48374711 48374711 G A SULT2A1 3'UTR 0.30 TCGA-BR-8081-01 19 49575417 49575417 C T KCNA7 Silent p.A142A 0.19 TCGA-BR-8081-01 19 51129177 51129177 G A SYT3 Missense_Mutation p.A460V 0.16 deleterious(0.01) possibly_damaging(0.872) TCGA-BR-8081-01 19 51297840 51297840 T C ACPT Splice_Site p.X329_splice 0.12 TCGA-BR-8081-01 19 53302076 53302076 G A ZNF28 3'UTR 0.19 TCGA-BR-8081-01 19 53473566 53473566 T - ZNF702P RNA 0.15 TCGA-BR-8081-01 19 53667933 53667933 C T ZNF665 Missense_Mutation p.G604S 0.12 deleterious(0.03) probably_damaging(0.987) TCGA-BR-8081-01 19 54754814 54754814 G T LILRB5 Intron 0.12 TCGA-BR-8081-01 19 54761138 54761138 G T LILRB5 5'Flank 0.21 TCGA-BR-8081-01 19 54973657 54973657 A G LENG9 Silent p.A373A 0.12 TCGA-BR-8081-01 19 55286906 55286906 C T KIR2DL1 Silent p.V220V 0.08 TCGA-BR-8081-01 19 58490991 58490991 T C ZNF606 Missense_Mutation p.I353V 0.23 tolerated(0.52) probably_damaging(0.926) TCGA-BR-8081-01 19 6380326 6380326 A C GTF2F1 Missense_Mutation p.I507S 0.17 deleterious(0) possibly_damaging(0.537) TCGA-BR-8081-01 19 6680187 6680187 A G C3 Missense_Mutation p.Y1480H 0.18 deleterious(0) probably_damaging(1) TCGA-BR-8081-01 19 7964276 7964276 C T LRRC8E Missense_Mutation p.T290M 0.17 tolerated(0.15) possibly_damaging(0.513) TCGA-BR-8081-01 19 8808894 8808894 A T ACTL9 Missense_Mutation p.V53D 0.18 deleterious(0) probably_damaging(0.999) TCGA-BR-8081-01 19 9060506 9060506 A G MUC16 Silent p.S8980S 0.19 TCGA-BR-8081-01 1 100588802 100588802 A - SASS6 Frame_Shift_Del p.L57Yfs*14 0.27 TCGA-BR-8081-01 1 10318557 10318557 G A KIF1B Missense_Mutation p.D64N 0.15 deleterious(0.01) probably_damaging(0.979) TCGA-BR-8081-01 1 109318996 109318996 A - STXBP3 Frame_Shift_Del p.K214Sfs*13 0.13 TCGA-BR-8081-01 1 109484090 109484090 C T CLCC1 Missense_Mutation p.A245T 0.15 deleterious(0) probably_damaging(0.974) TCGA-BR-8081-01 1 109560141 109560141 T - WDR47 Frame_Shift_Del p.R81Gfs*7 0.11 TCGA-BR-8081-01 1 109656376 109656376 G C KIAA1324 5'Flank 0.14 TCGA-BR-8081-01 1 110255843 110255843 C T GSTM5 Intron 0.20 TCGA-BR-8081-01 1 110280306 110280306 C T GSTM3 Missense_Mutation p.G147E 0.13 deleterious(0) possibly_damaging(0.774) TCGA-BR-8081-01 1 115142883 115142883 G A DENND2C Missense_Mutation p.R683W 0.20 deleterious(0.01) probably_damaging(0.977) TCGA-BR-8081-01 1 11579854 11579854 G A PTCHD2 Missense_Mutation p.R706H 0.13 tolerated(0.12) possibly_damaging(0.475) TCGA-BR-8081-01 1 117156549 117156549 G A IGSF3 Silent p.L224L 0.19 TCGA-BR-8081-01 1 11718602 11718602 G A FBXO44 Silent p.K135K 0.30 TCGA-BR-8081-01 1 117559831 117559831 A G CD101 Missense_Mutation p.I450V 0.15 tolerated(0.6) benign(0.006) TCGA-BR-8081-01 1 117644048 117644049 - A TTF2 Frame_Shift_Ins p.K1134Efs*22 0.15 TCGA-BR-8081-01 1 120906302 120906302 G A RP11-439A17.4 5'Flank 0.16 TCGA-BR-8081-01 1 12405567 12405567 G A VPS13D Splice_Site p.X3007_splice 0.24 TCGA-BR-8081-01 1 1289837 1289837 G A MXRA8 Silent p.S334S 0.11 TCGA-BR-8081-01 1 1328774 1328774 A G CCNL2 Splice_Site p.X220_splice 0.13 TCGA-BR-8081-01 1 13942443 13942443 A - PDPN 3'UTR 0.15 TCGA-BR-8081-01 1 150234016 150234016 C T CA14 Silent p.L79L 0.30 TCGA-BR-8081-01 1 151106915 151106915 G T SEMA6C Missense_Mutation p.A574D 0.46 tolerated(0.24) possibly_damaging(0.82) TCGA-BR-8081-01 1 151108068 151108068 G A SEMA6C Missense_Mutation p.R478W 0.18 deleterious(0) possibly_damaging(0.835) TCGA-BR-8081-01 1 151773687 151773687 C T LINGO4 Nonsense_Mutation p.W498* 0.15 TCGA-BR-8081-01 1 152080052 152080052 G A TCHH Missense_Mutation p.R1881W 0.23 possibly_damaging(0.689) TCGA-BR-8081-01 1 152276179 152276179 C A FLG Missense_Mutation p.G3728V 0.18 unknown(0) TCGA-BR-8081-01 1 152277587 152277587 C T FLG Missense_Mutation p.E3259K 0.21 unknown(0) TCGA-BR-8081-01 1 152777656 152777656 G A LCE1C Missense_Mutation p.S100L 0.20 deleterious_low_confidence(0) unknown(0) TCGA-BR-8081-01 1 153390574 153390574 G T S100A7A Missense_Mutation p.A6S 0.10 tolerated(0.13) possibly_damaging(0.854) TCGA-BR-8081-01 1 153507253 153507253 C A S100A6 Missense_Mutation p.K64N 0.06 tolerated(0.08) possibly_damaging(0.747) TCGA-BR-8081-01 1 153907390 153907390 G A DENND4B Silent p.R873R 0.10 TCGA-BR-8081-01 1 153946103 153946103 T - CREB3L4 Frame_Shift_Del p.S304Pfs*29 0.26 TCGA-BR-8081-01 1 154125250 154125250 G A NUP210L Missense_Mutation p.P101L 0.17 deleterious(0.03) benign(0.251) TCGA-BR-8081-01 1 154931946 154931946 G T PYGO2 Missense_Mutation p.P177H 0.26 tolerated(0.51) probably_damaging(0.953) TCGA-BR-8081-01 1 155233104 155233104 T C CLK2 Missense_Mutation p.T468A 0.11 deleterious(0.03) benign(0.003) TCGA-BR-8081-01 1 155920171 155920171 G A ARHGEF2 Missense_Mutation p.R936W 0.19 deleterious_low_confidence(0) possibly_damaging(0.487) TCGA-BR-8081-01 1 156169979 156169979 T C SLC25A44 Missense_Mutation p.V114A 0.17 tolerated(0.06) benign(0.318) TCGA-BR-8081-01 1 156622678 156622678 G A BCAN Missense_Mutation p.A646T 0.14 tolerated(0.66) benign(0.054) TCGA-BR-8081-01 1 156714905 156714905 G A HDGF Silent p.Y82Y 0.17 TCGA-BR-8081-01 1 156883234 156883234 G A PEAR1 Missense_Mutation p.A855T 0.14 tolerated(0.26) benign(0.002) TCGA-BR-8081-01 1 158577123 158577123 A G OR10Z1 Missense_Mutation p.T299A 0.13 tolerated(0.59) benign(0) TCGA-BR-8081-01 1 158651438 158651438 C T SPTA1 Missense_Mutation p.R137H 0.11 tolerated(1) benign(0.005) TCGA-BR-8081-01 1 161018315 161018315 C T ARHGAP30 Silent p.G832G 0.19 TCGA-BR-8081-01 1 161166501 161166501 C T ADAMTS4 Missense_Mutation p.R268Q 0.22 deleterious(0.04) benign(0.051) TCGA-BR-8081-01 1 162344047 162344047 G T C1orf111 Missense_Mutation p.P193T 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8081-01 1 162549290 162549290 A - UAP1 Frame_Shift_Del p.E189Rfs*3 0.13 TCGA-BR-8081-01 1 16259385 16259385 C T SPEN Missense_Mutation p.A2217V 0.13 probably_damaging(0.994) TCGA-BR-8081-01 1 164776856 164776856 A G PBX1 Missense_Mutation p.Y260C 0.15 deleterious(0) probably_damaging(0.998) TCGA-BR-8081-01 1 169337064 169337064 T C NME7 5'UTR 0.38 TCGA-BR-8081-01 1 171494056 171494056 A G PRRC2C Silent p.Q382Q 0.17 TCGA-BR-8081-01 1 172411799 172411799 G A PIGC 5'UTR 0.21 TCGA-BR-8081-01 1 17601227 17601227 C T PADI3 Missense_Mutation p.A418V 0.16 tolerated(1) benign(0.023) TCGA-BR-8081-01 1 17609502 17609502 T C PADI3 Silent p.H641H 0.13 TCGA-BR-8081-01 1 17727905 17727905 G A PADI6 RNA 0.19 TCGA-BR-8081-01 1 178063757 178063757 G A RASAL2 Missense_Mutation p.V44I 0.22 tolerated_low_confidence(0.05) benign(0.352) TCGA-BR-8081-01 1 182025680 182025680 G A ZNF648 Missense_Mutation p.S489L 0.12 deleterious(0) probably_damaging(0.943) TCGA-BR-8081-01 1 182869270 182869270 C T SHCBP1L Missense_Mutation p.V604I 0.22 tolerated(0.21) benign(0.048) TCGA-BR-8081-01 1 186086701 186086701 A - HMCN1 Frame_Shift_Del p.N3933Mfs*3 0.18 TCGA-BR-8081-01 1 186328998 186328998 C T TPR Missense_Mutation p.R441H 0.20 possibly_damaging(0.522) TCGA-BR-8081-01 1 190068096 190068096 T C BRINP3 Silent p.T451T 0.13 TCGA-BR-8081-01 1 19440111 19440114 GAGA - UBR4 Intron 0.18 TCGA-BR-8081-01 1 19467976 19467976 C A UBR4 Missense_Mutation p.G2785C 0.17 probably_damaging(0.994) TCGA-BR-8081-01 1 19488197 19488197 G A UBR4 Silent p.G1687G 0.12 TCGA-BR-8081-01 1 196749098 196749098 G A CFHR3 Missense_Mutation p.R142H 0.06 tolerated(0.08) benign(0) TCGA-BR-8081-01 1 197093329 197093329 T C ASPM Missense_Mutation p.R1101G 0.16 tolerated(0.15) benign(0.082) TCGA-BR-8081-01 1 197108943 197108943 G A ASPM Silent p.I660I 0.20 TCGA-BR-8081-01 1 200944791 200944791 C T KIF21B Missense_Mutation p.E1484K 0.20 deleterious(0.03) benign(0.195) TCGA-BR-8081-01 1 201840319 201840319 C T IPO9 Missense_Mutation p.H814Y 0.16 deleterious(0.05) possibly_damaging(0.837) TCGA-BR-8081-01 1 202568475 202568475 C T SYT2 Silent p.P308P 0.09 TCGA-BR-8081-01 1 204403573 204403573 A G PIK3C2B Missense_Mutation p.I1227T 0.20 deleterious(0.01) probably_damaging(0.997) TCGA-BR-8081-01 1 204419075 204419075 G A PIK3C2B Missense_Mutation p.P713S 0.25 tolerated(0.13) probably_damaging(0.958) TCGA-BR-8081-01 1 207222856 207222856 T C YOD1 Missense_Mutation p.I186V 0.20 deleterious(0.03) probably_damaging(0.998) TCGA-BR-8081-01 1 207646356 207646356 C T CR2 Missense_Mutation p.H604Y 0.19 tolerated(0.37) benign(0.005) TCGA-BR-8081-01 1 207748941 207748941 C T CR1 Missense_Mutation p.H1485Y 0.17 tolerated(1) benign(0.022) TCGA-BR-8081-01 1 207940426 207940426 T C CD46 Missense_Mutation p.Y248H 0.08 deleterious(0) probably_damaging(0.998) TCGA-BR-8081-01 1 208219401 208219401 T C PLXNA2 Missense_Mutation p.Y1106C 0.17 tolerated(0.09) possibly_damaging(0.552) TCGA-BR-8081-01 1 21097459 21097459 T C HP1BP3 Silent p.A206A 0.15 TCGA-BR-8081-01 1 213403856 213403856 A G RPS6KC1 Missense_Mutation p.D354G 0.15 deleterious(0) probably_damaging(0.998) TCGA-BR-8081-01 1 215844335 215844335 A C USH2A Silent p.P4704P 0.11 TCGA-BR-8081-01 1 216419954 216419954 C A USH2A Nonsense_Mutation p.G928* 0.05 TCGA-BR-8081-01 1 217955552 217955552 C T SPATA17 Missense_Mutation p.R254C 0.13 deleterious(0) probably_damaging(1) TCGA-BR-8081-01 1 22140919 22140919 G A LDLRAD2 Silent p.T38T 0.18 TCGA-BR-8081-01 1 22176669 22176669 G - HSPG2 Frame_Shift_Del p.T2438Rfs*19 0.22 TCGA-BR-8081-01 1 22188329 22188329 G T HSPG2 Missense_Mutation p.R1626S 0.19 possibly_damaging(0.767) TCGA-BR-8081-01 1 226576414 226576414 C T PARP1 Silent p.A220A 0.17 TCGA-BR-8081-01 1 228210473 228210473 C T WNT3A Silent p.Y59Y 0.30 TCGA-BR-8081-01 1 228495098 228495098 C T OBSCN Missense_Mutation p.A5068V 0.29 benign(0.027) TCGA-BR-8081-01 1 228646120 228646120 C T HIST3H2BB Missense_Mutation p.T97M 0.15 deleterious_low_confidence(0.02) benign(0.413) TCGA-BR-8081-01 1 229462512 229462514 GTT - CCSAP In_Frame_Del p.N203del 0.15 TCGA-BR-8081-01 1 229567918 229567918 C T ACTA1 Missense_Mutation p.V211M 0.27 deleterious_low_confidence(0.02) probably_damaging(0.965) TCGA-BR-8081-01 1 232002317 232002317 T G DISC1 Missense_Mutation p.L677R 0.24 unknown(0) TCGA-BR-8081-01 1 236714167 236714167 A G HEATR1 3'UTR 0.06 TCGA-BR-8081-01 1 23758199 23758199 C T ASAP3 Missense_Mutation p.V846I 0.22 deleterious_low_confidence(0.01) benign(0.117) TCGA-BR-8081-01 1 237659953 237659953 G T RYR2 Nonsense_Mutation p.G702* 0.13 TCGA-BR-8081-01 1 237806708 237806708 G A RYR2 Missense_Mutation p.V2435I 0.10 benign(0.353) TCGA-BR-8081-01 1 237947057 237947057 A T RYR2 Missense_Mutation p.K4015N 0.16 possibly_damaging(0.566) TCGA-BR-8081-01 1 24077884 24077884 C A TCEB3 Silent p.A289A 0.09 TCGA-BR-8081-01 1 242277235 242277235 C T PLD5 Missense_Mutation p.A343T 0.20 deleterious(0) probably_damaging(0.915) TCGA-BR-8081-01 1 245006587 245006587 T - COX20 3'UTR 0.19 TCGA-BR-8081-01 1 246903516 246903516 G T SCCPDH Missense_Mutation p.D143Y 0.13 deleterious(0) benign(0.331) TCGA-BR-8081-01 1 247614943 247614943 C T OR2B11 Silent p.T114T 0.19 TCGA-BR-8081-01 1 247769083 247769083 C A OR2G3 Missense_Mutation p.L66I 0.13 deleterious(0) probably_damaging(0.991) TCGA-BR-8081-01 1 248004808 248004808 G A OR11L1 Missense_Mutation p.R131C 0.17 deleterious(0) benign(0.409) TCGA-BR-8081-01 1 248112563 248112563 T C OR2L8 Missense_Mutation p.M135T 0.13 deleterious(0) possibly_damaging(0.866) TCGA-BR-8081-01 1 248458349 248458349 C T OR2T12 Missense_Mutation p.E178K 0.22 deleterious(0.01) probably_damaging(0.939) TCGA-BR-8081-01 1 248487386 248487386 G A OR2M7 Missense_Mutation p.A162V 0.20 tolerated(1) benign(0.004) TCGA-BR-8081-01 1 248844882 248844882 G - OR14I1 Frame_Shift_Del p.Q242Sfs*17 0.12 TCGA-BR-8081-01 1 249151606 249151606 C T ZNF692 Missense_Mutation p.R106Q 0.21 tolerated(0.15) possibly_damaging(0.846) TCGA-BR-8081-01 1 25571717 25571717 G T C1orf63 Missense_Mutation p.A199D 0.16 deleterious(0.03) probably_damaging(0.961) TCGA-BR-8081-01 1 26514777 26514778 - C CNKSR1 Frame_Shift_Ins p.P506Tfs*9 0.22 TCGA-BR-8081-01 1 27687240 27687240 C T MAP3K6 Silent p.T670T 0.14 TCGA-BR-8081-01 1 2939080 2939080 C T ACTRT2 Missense_Mutation p.S277L 0.20 tolerated(0.06) benign(0.386) TCGA-BR-8081-01 1 31189718 31189718 C T MATN1 Missense_Mutation p.V237M 0.19 deleterious(0.04) benign(0.04) TCGA-BR-8081-01 1 32207516 32207516 C T BAI2 Silent p.T490T 0.13 TCGA-BR-8081-01 1 32623924 32623924 G A KPNA6 Missense_Mutation p.V130M 0.22 deleterious(0) probably_damaging(0.958) TCGA-BR-8081-01 1 3390004 3390004 G A ARHGEF16 Missense_Mutation p.R408Q 0.24 tolerated(0.32) benign(0.037) TCGA-BR-8081-01 1 33985245 33985245 G A CSMD2 Missense_Mutation p.A3446V 0.16 tolerated(0.28) benign(0.05) TCGA-BR-8081-01 1 36026370 36026370 C T NCDN Silent p.A206A 0.18 TCGA-BR-8081-01 1 36028834 36028834 G A NCDN Missense_Mutation p.V473I 0.12 deleterious(0) benign(0.017) TCGA-BR-8081-01 1 39910508 39910508 G A MACF1 Splice_Site p.X4476_splice 0.10 TCGA-BR-8081-01 1 40124850 40124850 A G NT5C1A Silent p.G350G 0.17 TCGA-BR-8081-01 1 43166532 43166532 A C YBX1 Missense_Mutation p.Q274P 0.12 deleterious(0.02) probably_damaging(0.954) TCGA-BR-8081-01 1 43240471 43240471 C A C1orf50 Missense_Mutation p.P116T 0.16 deleterious(0) probably_damaging(0.997) TCGA-BR-8081-01 1 44069443 44069443 G A PTPRF Missense_Mutation p.D874N 0.15 deleterious(0.02) possibly_damaging(0.845) TCGA-BR-8081-01 1 44482788 44482788 C T SLC6A9 Silent p.T6T 0.25 TCGA-BR-8081-01 1 44680454 44680454 C T DMAP1 Missense_Mutation p.R93W 0.15 deleterious(0) probably_damaging(0.943) TCGA-BR-8081-01 1 44713617 44713617 C T ERI3 Missense_Mutation p.G309S 0.08 deleterious(0) probably_damaging(1) TCGA-BR-8081-01 1 45793416 45793416 T C HPDL Missense_Mutation p.L199P 0.21 tolerated(0.24) possibly_damaging(0.549) TCGA-BR-8081-01 1 46876093 46876093 G A FAAH Missense_Mutation p.C400Y 0.22 deleterious(0.03) probably_damaging(0.999) TCGA-BR-8081-01 1 48764299 48764299 A - SPATA6 3'UTR 0.10 TCGA-BR-8081-01 1 54291559 54291559 A - NDC1 Frame_Shift_Del p.F169Sfs*3 0.12 TCGA-BR-8081-01 1 60314140 60314140 A - HOOK1 Frame_Shift_Del p.A364Qfs*8 0.11 TCGA-BR-8081-01 1 60506705 60506705 C T C1orf87 Nonsense_Mutation p.W147* 0.20 TCGA-BR-8081-01 1 6215730 6215730 G A CHD5 Silent p.D145D 0.18 TCGA-BR-8081-01 1 62916034 62916034 G A USP1 Silent p.A580A 0.16 TCGA-BR-8081-01 1 63090936 63090936 A - DOCK7 Frame_Shift_Del p.F473Lfs*8 0.22 TCGA-BR-8081-01 1 6585974 6585974 A G NOL9 Silent p.P683P 0.20 TCGA-BR-8081-01 1 6692557 6692557 T C THAP3 Splice_Site p.X146_splice 0.15 TCGA-BR-8081-01 1 74507249 74507249 C T LRRIQ3 Missense_Mutation p.A456T 0.15 tolerated(1) benign(0) TCGA-BR-8081-01 1 74649285 74649285 T C LRRIQ3 Silent p.K28K 0.25 TCGA-BR-8081-01 1 86591529 86591529 G A COL24A1 Missense_Mutation p.H164Y 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8081-01 1 87805253 87805253 G A LMO4 Missense_Mutation p.G91R 0.16 tolerated(0.11) probably_damaging(0.942) TCGA-BR-8081-01 1 9780209 9780209 G A PIK3CD Missense_Mutation p.R460H 0.19 tolerated(0.56) benign(0.003) TCGA-BR-8081-01 1 99772446 99772446 C T LPPR4 Silent p.R724R 0.16 TCGA-BR-8081-01 1 9990467 9990468 - T LZIC Frame_Shift_Ins p.T188Nfs*11 0.14 TCGA-BR-8081-01 20 1285978 1285978 G A SNPH Silent p.T255T 0.11 TCGA-BR-8081-01 20 17641004 17641004 G A RRBP1 Missense_Mutation p.A50V 0.23 tolerated(0.08) probably_damaging(0.964) TCGA-BR-8081-01 20 20553666 20553666 C - RALGAPA2 Frame_Shift_Del p.S919Afs*24 0.26 TCGA-BR-8081-01 20 23066077 23066077 G A CD93 Silent p.G251G 0.19 TCGA-BR-8081-01 20 23350271 23350271 A G GZF1 Missense_Mutation p.N560D 0.17 deleterious(0.02) possibly_damaging(0.821) TCGA-BR-8081-01 20 25273163 25273163 C T PYGB Silent p.N697N 0.06 TCGA-BR-8081-01 20 25507059 25507059 G A NINL Silent p.N55N 0.11 TCGA-BR-8081-01 20 30132838 30132838 G T HM13 Nonsense_Mutation p.E152* 0.09 TCGA-BR-8081-01 20 32232206 32232206 C T CBFA2T2 Silent p.I523I 0.13 TCGA-BR-8081-01 20 32663747 32663747 C T RALY Missense_Mutation p.R149W 0.27 deleterious(0) probably_damaging(0.99) TCGA-BR-8081-01 20 34144790 34144790 C T ERGIC3 Missense_Mutation p.A314V 0.10 tolerated(0.62) benign(0.002) TCGA-BR-8081-01 20 3653445 3653445 C T ADAM33 Missense_Mutation p.G412R 0.21 tolerated(0.43) benign(0.052) TCGA-BR-8081-01 20 36627613 36627613 G - TTI1 Frame_Shift_Del p.L924Wfs*37 0.18 TCGA-BR-8081-01 20 37053897 37053897 G A SNORA71B RNA 0.12 TCGA-BR-8081-01 20 37203485 37203485 C T RALGAPB Missense_Mutation p.P1454S 0.21 deleterious(0) possibly_damaging(0.628) TCGA-BR-8081-01 20 39721180 39721180 C - TOP1 Frame_Shift_Del p.P229Hfs*19 0.13 TCGA-BR-8081-01 20 40980779 40980779 G A PTPRT Silent p.S569S 0.19 TCGA-BR-8081-01 20 42825844 42825844 C T OSER1 Missense_Mutation p.A243T 0.25 tolerated(0.58) benign(0) TCGA-BR-8081-01 20 43938299 43938299 A C RBPJL Missense_Mutation p.K75T 0.20 deleterious(0) probably_damaging(0.973) TCGA-BR-8081-01 20 44530909 44530909 C T PLTP Missense_Mutation p.R391H 0.09 tolerated(0.06) benign(0.12) TCGA-BR-8081-01 20 45130815 45130815 C T ZNF334 Missense_Mutation p.C388Y 0.17 tolerated(0.08) probably_damaging(0.972) TCGA-BR-8081-01 20 45131154 45131154 C T ZNF334 Missense_Mutation p.R275H 0.14 tolerated(0.54) benign(0.028) TCGA-BR-8081-01 20 52645217 52645217 G A BCAS1 Missense_Mutation p.P146L 0.06 tolerated(0.97) benign(0.04) TCGA-BR-8081-01 20 54824345 54824345 C T MC3R Missense_Mutation p.A149V 0.16 deleterious(0) probably_damaging(1) TCGA-BR-8081-01 20 5974312 5974312 C T MCM8 Missense_Mutation p.R801W 0.11 tolerated(0.06) possibly_damaging(0.832) TCGA-BR-8081-01 20 6012658 6012658 C T CRLS1 Nonsense_Mutation p.R221* 0.08 TCGA-BR-8081-01 20 60890152 60890152 C A LAMA5 Missense_Mutation p.W2660L 0.27 benign(0.004) TCGA-BR-8081-01 20 61513091 61513091 C T DIDO1 Missense_Mutation p.R1406Q 0.20 benign(0.164) TCGA-BR-8081-01 20 62196357 62196357 C T HELZ2 Missense_Mutation p.R1273Q 0.38 deleterious(0.01) benign(0.241) TCGA-BR-8081-01 20 62493649 62493649 G A ABHD16B Silent p.T252T 0.24 TCGA-BR-8081-01 20 62904787 62904787 A G PCMTD2 Missense_Mutation p.D307G 0.09 deleterious(0.02) possibly_damaging(0.464) TCGA-BR-8081-01 20 744159 744159 G A SLC52A3 Silent p.S352S 0.12 TCGA-BR-8081-01 21 10914434 10914434 G A TPTE Missense_Mutation p.R429C 0.10 tolerated(0.16) benign(0.009) TCGA-BR-8081-01 21 19666643 19666643 G A TMPRSS15 Silent p.C810C 0.20 TCGA-BR-8081-01 21 19737468 19737468 C T TMPRSS15 Silent p.Q254Q 0.12 TCGA-BR-8081-01 21 22881276 22881276 C T NCAM2 Nonsense_Mutation p.Q728* 0.08 TCGA-BR-8081-01 21 27327992 27327992 G A APP Silent p.F512F 0.18 TCGA-BR-8081-01 21 30380391 30380391 G A RWDD2B Missense_Mutation p.A139V 0.21 tolerated(0.14) benign(0.05) TCGA-BR-8081-01 21 34923165 34923165 C T SON Missense_Mutation p.T543M 0.18 possibly_damaging(0.791) TCGA-BR-8081-01 21 37617398 37617398 C T DOPEY2 Silent p.C1040C 0.11 TCGA-BR-8081-01 21 38269298 38269298 G T HLCS Missense_Mutation p.P438H 0.14 deleterious(0) probably_damaging(0.999) TCGA-BR-8081-01 21 41385265 41385265 T C DSCAM Missense_Mutation p.N1912S 0.09 tolerated_low_confidence(0.17) benign(0.123) TCGA-BR-8081-01 21 44515560 44515560 G A U2AF1 Silent p.N112N 0.16 TCGA-BR-8081-01 21 45507746 45507747 - C TRAPPC10 Frame_Shift_Ins p.H904Pfs*5 0.16 TCGA-BR-8081-01 21 45514004 45514004 C - TRAPPC10 Frame_Shift_Del p.P1021Lfs*23 0.17 TCGA-BR-8081-01 21 45546795 45546795 C T PWP2 Missense_Mutation p.R697W 0.19 deleterious(0) probably_damaging(0.998) TCGA-BR-8081-01 21 46047097 46047097 G A KRTAP10-9 Silent p.A3A 0.17 TCGA-BR-8081-01 21 46308785 46308785 C T ITGB2 Missense_Mutation p.E635K 0.27 tolerated(0.57) benign(0.004) TCGA-BR-8081-01 22 17488876 17488876 G A GAB4 Silent p.S43S 0.23 TCGA-BR-8081-01 22 17590340 17590340 T C IL17RA Missense_Mutation p.V744A 0.12 tolerated(0.4) benign(0.004) TCGA-BR-8081-01 22 19050715 19050715 C A DGCR2 Missense_Mutation p.G209C 0.12 deleterious(0) probably_damaging(0.95) TCGA-BR-8081-01 22 22024875 22024875 C T PPIL2 Missense_Mutation p.R35C 0.18 deleterious(0) possibly_damaging(0.899) TCGA-BR-8081-01 22 22724348 22724348 C T IGLV7-46 Missense_Mutation p.R82W 0.23 TCGA-BR-8081-01 22 22892556 22892556 A G PRAME Missense_Mutation p.F182S 0.15 tolerated(0.33) benign(0) TCGA-BR-8081-01 22 25010758 25010758 C T GGT1 Silent p.D60D 0.12 TCGA-BR-8081-01 22 26890229 26890231 CTC - TFIP11 In_Frame_Del p.E678del 0.20 TCGA-BR-8081-01 22 26932299 26932299 G - TPST2 Frame_Shift_Del p.N333Tfs*17 0.14 TCGA-BR-8081-01 22 28195359 28195359 G A MN1 Silent p.G391G 0.33 TCGA-BR-8081-01 22 29091778 29091778 A - CHEK2 Frame_Shift_Del p.E437Kfs*20 0.23 TCGA-BR-8081-01 22 30210653 30210653 G T ASCC2 Missense_Mutation p.P238H 0.15 deleterious(0.03) possibly_damaging(0.85) TCGA-BR-8081-01 22 30977552 30977552 C T PES1 Missense_Mutation p.R237H 0.27 tolerated(0.1) probably_damaging(0.994) TCGA-BR-8081-01 22 31522407 31522407 C T INPP5J Silent p.D71D 0.14 TCGA-BR-8081-01 22 32210985 32210985 C T DEPDC5 Nonsense_Mutation p.R485* 0.20 TCGA-BR-8081-01 22 35660704 35660704 C T HMGXB4 Missense_Mutation p.T108I 0.06 deleterious(0) possibly_damaging(0.835) TCGA-BR-8081-01 22 36624092 36624092 G A APOL2 Silent p.G124G 0.17 TCGA-BR-8081-01 22 37771205 37771205 G A ELFN2 Nonsense_Mutation p.R124* 0.10 TCGA-BR-8081-01 22 38823343 38823343 G A KCNJ4 Silent p.I265I 0.14 TCGA-BR-8081-01 22 39388072 39388072 G A APOBEC3B Missense_Mutation p.R351H 0.18 tolerated(1) benign(0.002) TCGA-BR-8081-01 22 41222545 41222545 C T ST13 Silent p.A369A 0.16 TCGA-BR-8081-01 22 41790186 41790186 G A TEF Missense_Mutation p.A188T 0.15 tolerated(0.55) benign(0.012) TCGA-BR-8081-01 22 41833202 41833202 G A TOB2 Silent p.L50L 0.14 TCGA-BR-8081-01 22 43529111 43529111 C T MCAT Missense_Mutation p.A371T 0.23 tolerated(0.14) benign(0.06) TCGA-BR-8081-01 22 43619155 43619155 G A SCUBE1 Silent p.G425G 0.18 TCGA-BR-8081-01 22 44031028 44031028 G A EFCAB6 Silent p.F684F 0.07 TCGA-BR-8081-01 22 44328951 44328952 - C PNPLA3 Frame_Shift_Ins p.D230Gfs*43 0.10 TCGA-BR-8081-01 22 44368144 44368144 C T SAMM50 Silent p.D117D 0.16 TCGA-BR-8081-01 22 47033823 47033823 C A GRAMD4 Missense_Mutation p.H83Q 0.14 tolerated(0.19) probably_damaging(0.953) TCGA-BR-8081-01 22 50318101 50318101 C T CRELD2 Missense_Mutation p.A338V 0.21 tolerated(0.5) benign(0.407) TCGA-BR-8081-01 22 50635771 50635771 C A TRABD Silent p.A174A 0.16 TCGA-BR-8081-01 22 50892961 50892961 C T SBF1 Missense_Mutation p.A1675T 0.19 tolerated(0.05) probably_damaging(0.999) TCGA-BR-8081-01 22 51160524 51160524 G A SHANK3 Silent p.P1437P 0.21 TCGA-BR-8081-01 2 100210562 100210563 TC - AFF3 Frame_Shift_Del p.K546Gfs*22 0.14 TCGA-BR-8081-01 2 10136026 10136026 C A GRHL1 Missense_Mutation p.P507T 0.22 tolerated(0.4) benign(0.002) TCGA-BR-8081-01 2 106509597 106509597 G A NCK2 Missense_Mutation p.G370R 0.31 deleterious(0) probably_damaging(1) TCGA-BR-8081-01 2 114257389 114257389 G A FOXD4L1 Missense_Mutation p.A186T 0.16 deleterious(0.01) probably_damaging(0.955) TCGA-BR-8081-01 2 116572537 116572537 A C DPP10 Missense_Mutation p.E627D 0.16 tolerated(0.33) benign(0.074) TCGA-BR-8081-01 2 11780503 11780503 C T GREB1 Missense_Mutation p.R1925W 0.17 deleterious(0) probably_damaging(1) TCGA-BR-8081-01 2 120195033 120195033 C - TMEM37 3'UTR 0.15 TCGA-BR-8081-01 2 130930247 130930247 G A SMPD4 Missense_Mutation p.P192L 0.16 deleterious(0.01) benign(0.007) TCGA-BR-8081-01 2 132263987 132263987 C T AC093838.4 RNA 0.22 TCGA-BR-8081-01 2 136579747 136579747 G A LCT Intron 0.20 TCGA-BR-8081-01 2 152522788 152522788 T - NEB Frame_Shift_Del p.K1616Rfs*19 0.20 TCGA-BR-8081-01 2 15417141 15417141 C T NBAS Silent p.Q1741Q 0.08 TCGA-BR-8081-01 2 160181327 160181327 A G BAZ2B Silent p.S2116S 0.20 TCGA-BR-8081-01 2 163099429 163099429 C T FAP Missense_Mutation p.R27H 0.15 tolerated(0.37) benign(0.086) TCGA-BR-8081-01 2 1652415 1652415 G A PXDN Missense_Mutation p.T1046M 0.21 tolerated(1) benign(0.002) TCGA-BR-8081-01 2 168105457 168105457 A G XIRP2 Missense_Mutation p.I2519V 0.12 benign(0.003) TCGA-BR-8081-01 2 169996081 169996081 C T LRP2 Silent p.A4413A 0.11 TCGA-BR-8081-01 2 170416906 170416906 T C FASTKD1 Missense_Mutation p.E321G 0.22 deleterious(0.01) probably_damaging(0.945) TCGA-BR-8081-01 2 171822458 171822458 G A GORASP2 Missense_Mutation p.A393T 0.22 tolerated_low_confidence(0.39) benign(0.047) TCGA-BR-8081-01 2 174229545 174229545 G A CDCA7 Missense_Mutation p.R241H 0.18 tolerated(0.1) possibly_damaging(0.537) TCGA-BR-8081-01 2 175431764 175431764 G A WIPF1 Intron 0.16 TCGA-BR-8081-01 2 177053524 177053524 C T HOXD1 5'UTR 0.40 TCGA-BR-8081-01 2 178977308 178977308 G A RBM45 Missense_Mutation p.G12D 0.11 deleterious_low_confidence(0.02) benign(0.093) TCGA-BR-8081-01 2 179259111 179259111 G A OSBPL6 Missense_Mutation p.R907Q 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8081-01 2 179397429 179397429 C T TTN Missense_Mutation p.R34638H 0.15 TCGA-BR-8081-01 2 179414715 179414715 T C TTN Missense_Mutation p.Q30617R 0.12 TCGA-BR-8081-01 2 179535859 179535860 - T TTN Frame_Shift_Ins p.P11756Tfs*4 0.26 TCGA-BR-8081-01 2 179590652 179590652 C T TTN Silent p.R6799R 0.17 TCGA-BR-8081-01 2 180634426 180634426 C T ZNF385B Silent p.R19R 0.22 TCGA-BR-8081-01 2 182374394 182374394 C T ITGA4 Missense_Mutation p.R569W 0.17 deleterious(0) probably_damaging(1) TCGA-BR-8081-01 2 183860434 183860434 C T NCKAP1 Missense_Mutation p.D252N 0.18 deleterious(0.01) benign(0.373) TCGA-BR-8081-01 2 189927977 189927977 C T COL5A2 Missense_Mutation p.G597D 0.14 probably_damaging(1) TCGA-BR-8081-01 2 197636657 197636657 A G GTF3C3 Missense_Mutation p.M692T 0.25 deleterious(0) benign(0.428) TCGA-BR-8081-01 2 197986194 197986194 G A ANKRD44 Silent p.N256N 0.09 TCGA-BR-8081-01 2 198540105 198540105 C T RFTN2 Silent p.P26P 0.09 TCGA-BR-8081-01 2 198949403 198949404 - T PLCL1 Frame_Shift_Ins p.D390* 0.12 TCGA-BR-8081-01 2 201371662 201371662 C T KCTD18 Silent p.R26R 0.21 TCGA-BR-8081-01 2 203383560 203383560 C T BMPR2 Nonsense_Mutation p.R213* 0.10 TCGA-BR-8081-01 2 203622015 203622015 A C FAM117B Missense_Mutation p.Q395P 0.20 tolerated(0.05) possibly_damaging(0.656) TCGA-BR-8081-01 2 204735367 204735367 T A CTLA4 Missense_Mutation p.F56L 0.15 tolerated(0.81) benign(0.231) TCGA-BR-8081-01 2 206305302 206305302 C T PARD3B Missense_Mutation p.R922W 0.19 deleterious(0) benign(0.007) TCGA-BR-8081-01 2 210560533 210560533 G A MAP2 Silent p.T1213T 0.18 TCGA-BR-8081-01 2 210574923 210574923 T A MAP2 Missense_Mutation p.V1673D 0.19 deleterious(0) probably_damaging(0.998) TCGA-BR-8081-01 2 210882238 210882238 G T RPE Missense_Mutation p.E173D 0.16 deleterious(0) possibly_damaging(0.809) TCGA-BR-8081-01 2 218712976 218712976 G T TNS1 Missense_Mutation p.P630H 0.16 deleterious(0) probably_damaging(0.999) TCGA-BR-8081-01 2 220353375 220353375 G A SPEG Missense_Mutation p.V2672M 0.17 possibly_damaging(0.678) TCGA-BR-8081-01 2 220439842 220439842 G A INHA Missense_Mutation p.R232H 0.10 deleterious(0) probably_damaging(0.999) TCGA-BR-8081-01 2 220494917 220494917 G A SLC4A3 Silent p.E245E 0.24 TCGA-BR-8081-01 2 225376167 225376167 C T CUL3 Missense_Mutation p.V263M 0.14 deleterious(0.02) probably_damaging(0.997) TCGA-BR-8081-01 2 231042288 231042288 C T SP110 Missense_Mutation p.R519H 0.15 tolerated(0.64) possibly_damaging(0.715) TCGA-BR-8081-01 2 233715062 233715062 C T GIGYF2 Nonsense_Mutation p.Q1280* 0.16 TCGA-BR-8081-01 2 241463633 241463633 C T ANKMY1 Missense_Mutation p.G412S 0.26 tolerated(0.91) benign(0.004) TCGA-BR-8081-01 2 242066674 242066674 T C PASK Silent p.P552P 0.14 TCGA-BR-8081-01 2 242741267 242741267 G A GAL3ST2 Missense_Mutation p.S64N 0.14 deleterious(0) probably_damaging(0.989) TCGA-BR-8081-01 2 24524945 24524945 C T ITSN2 Missense_Mutation p.G295E 0.13 deleterious(0) probably_damaging(1) TCGA-BR-8081-01 2 25042948 25042948 G A ADCY3 Silent p.Y1096Y 0.09 TCGA-BR-8081-01 2 25061489 25061489 C T ADCY3 Missense_Mutation p.R453H 0.17 deleterious(0) probably_damaging(0.983) TCGA-BR-8081-01 2 25194767 25194767 C T DNAJC27 Missense_Mutation p.A3T 0.21 tolerated_low_confidence(0.74) benign(0.001) TCGA-BR-8081-01 2 26101215 26101215 G - ASXL2 5'UTR 0.17 TCGA-BR-8081-01 2 27458503 27458503 G A CAD Missense_Mutation p.V1357I 0.33 tolerated(1) benign(0.044) TCGA-BR-8081-01 2 27608664 27608664 C T PPM1G Missense_Mutation p.R120Q 0.17 tolerated(0.11) benign(0.238) TCGA-BR-8081-01 2 29404624 29404624 C A CLIP4 Silent p.A661A 0.14 TCGA-BR-8081-01 2 31489099 31489099 G T EHD3 Silent p.L379L 0.16 TCGA-BR-8081-01 2 31593290 31593290 G A XDH Silent p.S637S 0.21 TCGA-BR-8081-01 2 33572473 33572473 A G LTBP1 Missense_Mutation p.E1299G 0.09 deleterious(0.02) probably_damaging(0.979) TCGA-BR-8081-01 2 3673649 3673649 T C COLEC11 Intron 0.13 TCGA-BR-8081-01 2 40656427 40656427 C A SLC8A1 Nonsense_Mutation p.E332* 0.15 TCGA-BR-8081-01 2 56098186 56098186 C T EFEMP1 Missense_Mutation p.R358H 0.23 deleterious(0.03) probably_damaging(0.994) TCGA-BR-8081-01 2 61433932 61433932 C T USP34 Silent p.S3003S 0.32 TCGA-BR-8081-01 2 61709583 61709583 A G XPO1 Silent p.V968V 0.14 TCGA-BR-8081-01 2 69049474 69049474 A G ARHGAP25 Silent p.T401T 0.11 TCGA-BR-8081-01 2 69732777 69732777 T C AAK1 Silent p.S731S 0.16 TCGA-BR-8081-01 2 70392682 70392682 T - C2orf42 Frame_Shift_Del p.K410Nfs*38 0.19 TCGA-BR-8081-01 2 71576635 71576635 G A ZNF638 Missense_Mutation p.R184H 0.17 tolerated(0.57) probably_damaging(0.999) TCGA-BR-8081-01 2 75720679 75720679 G A EVA1A Silent p.L48L 0.24 TCGA-BR-8081-01 2 77746720 77746720 A C LRRTM4 Missense_Mutation p.L92R 0.15 deleterious(0) probably_damaging(1) TCGA-BR-8081-01 2 80101447 80101447 T C CTNNA2 Silent p.A277A 0.09 TCGA-BR-8081-01 2 85846392 85846392 G A USP39 Silent p.P106P 0.25 TCGA-BR-8081-01 2 86344184 86344184 T - PTCD3 Frame_Shift_Del p.L107Yfs*26 0.13 TCGA-BR-8081-01 2 97370099 97370099 G A LMAN2L 3'Flank 0.12 TCGA-BR-8081-01 2 99936110 99936110 A - TXNDC9 3'UTR 0.31 TCGA-BR-8081-01 3 100065064 100065064 G A NIT2 Missense_Mutation p.R157Q 0.11 deleterious(0) probably_damaging(0.999) TCGA-BR-8081-01 3 11888197 11888197 G C TAMM41 5'UTR 0.32 TCGA-BR-8081-01 3 119209485 119209485 T C POGLUT1 Silent p.D295D 0.11 TCGA-BR-8081-01 3 121712299 121712299 G A ILDR1 Missense_Mutation p.R433W 0.29 deleterious(0.02) benign(0.425) TCGA-BR-8081-01 3 121720675 121720675 T C ILDR1 Missense_Mutation p.D139G 0.22 deleterious(0.02) probably_damaging(0.989) TCGA-BR-8081-01 3 123021992 123021992 C T ADCY5 Silent p.A878A 0.15 TCGA-BR-8081-01 3 123419658 123419658 G A MYLK Missense_Mutation p.A886V 0.15 tolerated(0.29) benign(0.002) TCGA-BR-8081-01 3 12645699 12645699 G A RAF1 Missense_Mutation p.S257L 0.17 deleterious(0.01) benign(0.226) TCGA-BR-8081-01 3 127779411 127779411 C A SEC61A1 Missense_Mutation p.L175I 0.08 tolerated(0.19) benign(0.395) TCGA-BR-8081-01 3 12790209 12790209 G A TMEM40 Silent p.S52S 0.13 TCGA-BR-8081-01 3 129389363 129389363 C T TMCC1 Missense_Mutation p.A441T 0.06 tolerated(0.24) benign(0.072) TCGA-BR-8081-01 3 131293941 131293941 T C CPNE4 Missense_Mutation p.M301V 0.14 deleterious(0.01) benign(0.073) TCGA-BR-8081-01 3 133661493 133661493 C T SLCO2A1 Silent p.L527L 0.12 TCGA-BR-8081-01 3 134280384 134280384 A - CEP63 3'UTR 0.21 TCGA-BR-8081-01 3 141497441 141497441 G A GRK7 Silent p.A105A 0.17 TCGA-BR-8081-01 3 145917640 145917640 C T PLSCR4 Missense_Mutation p.C195Y 0.18 deleterious(0.01) benign(0.198) TCGA-BR-8081-01 3 147128485 147128485 G A ZIC1 Missense_Mutation p.G196S 0.15 tolerated(0.37) benign(0.189) TCGA-BR-8081-01 3 150398595 150398595 G A FAM194A Silent p.V335V 0.10 TCGA-BR-8081-01 3 151174864 151174864 C A IGSF10 Missense_Mutation p.G92C 0.16 deleterious(0.01) probably_damaging(0.949) TCGA-BR-8081-01 3 15516433 15516433 T - COLQ Frame_Shift_Del p.K185Rfs*39 0.13 TCGA-BR-8081-01 3 169485486 169485486 C A ACTRT3 Missense_Mutation p.G285C 0.18 deleterious(0) possibly_damaging(0.65) TCGA-BR-8081-01 3 171392296 171392296 G A PLD1 Silent p.N741N 0.11 TCGA-BR-8081-01 3 178952084 178952084 C T PIK3CA Missense_Mutation p.H1047Y 0.13 tolerated(1) benign(0.008) TCGA-BR-8081-01 3 184059734 184059734 G A FAM131A Intron 0.13 TCGA-BR-8081-01 3 186390618 186390618 C T HRG Missense_Mutation p.R201W 0.15 deleterious(0) possibly_damaging(0.689) TCGA-BR-8081-01 3 187444578 187444578 C T BCL6 Missense_Mutation p.R550H 0.13 tolerated(0.54) possibly_damaging(0.572) TCGA-BR-8081-01 3 195782167 195782168 TG - TFRC Frame_Shift_Del p.T561Rfs*13 0.28 TCGA-BR-8081-01 3 195796404 195796404 T - TFRC Frame_Shift_Del p.D242Ifs*9 0.19 TCGA-BR-8081-01 3 196043062 196043062 G A TCTEX1D2 Missense_Mutation p.L52F 0.10 deleterious(0.03) possibly_damaging(0.874) TCGA-BR-8081-01 3 19975208 19975208 T G EFHB Missense_Mutation p.K101N 0.12 deleterious_low_confidence(0) benign(0.086) TCGA-BR-8081-01 3 29925682 29925682 A G RBMS3 Silent p.T258T 0.10 TCGA-BR-8081-01 3 33427168 33427168 C T FBXL2 3'UTR 0.12 TCGA-BR-8081-01 3 36893221 36893222 - A TRANK1 Frame_Shift_Ins p.T1582Yfs*2 0.15 TCGA-BR-8081-01 3 38357085 38357085 C T SLC22A14 Missense_Mutation p.P472L 0.14 tolerated(0.91) benign(0.001) TCGA-BR-8081-01 3 38949441 38949441 T - SCN11A Frame_Shift_Del p.K491Sfs*5 0.16 TCGA-BR-8081-01 3 45038709 45038709 C T EXOSC7 Missense_Mutation p.R129W 0.15 deleterious(0.02) possibly_damaging(0.687) TCGA-BR-8081-01 3 45780148 45780148 C T SACM1L Silent p.S487S 0.14 TCGA-BR-8081-01 3 46399158 46399158 C T CCR2 Missense_Mutation p.P47L 0.18 tolerated(0.1) benign(0.035) TCGA-BR-8081-01 3 46415343 46415343 C T CCR5 Missense_Mutation p.A317V 0.23 tolerated(0.14) benign(0.014) TCGA-BR-8081-01 3 48621170 48621170 G - COL7A1 Frame_Shift_Del p.P1441Lfs*269 0.22 TCGA-BR-8081-01 3 48622168 48622168 G A COL7A1 Missense_Mutation p.P1349L 0.11 unknown(0) TCGA-BR-8081-01 3 48677486 48677486 G A CELSR3 Missense_Mutation p.R3178W 0.31 deleterious_low_confidence(0) possibly_damaging(0.487) TCGA-BR-8081-01 3 49053239 49053239 C A DALRD3 Missense_Mutation p.G504W 0.15 deleterious(0) probably_damaging(1) TCGA-BR-8081-01 3 49212303 49212303 G A KLHDC8B Missense_Mutation p.V224I 0.13 tolerated(0.31) benign(0.095) TCGA-BR-8081-01 3 49940022 49940022 C T MST1R Missense_Mutation p.E341K 0.14 deleterious(0.01) possibly_damaging(0.763) TCGA-BR-8081-01 3 50402516 50402518 CTT - CACNA2D2 In_Frame_Del p.K1073del 0.10 TCGA-BR-8081-01 3 51968519 51968519 C T RRP9 Missense_Mutation p.R410Q 0.23 deleterious(0.04) benign(0.016) TCGA-BR-8081-01 3 53531422 53531422 G A CACNA1D Missense_Mutation p.R104H 0.15 deleterious(0) probably_damaging(0.997) TCGA-BR-8081-01 3 53854543 53854543 G A CHDH Missense_Mutation p.R360W 0.20 deleterious(0.01) possibly_damaging(0.462) TCGA-BR-8081-01 3 58417706 58417706 T A PDHB Silent p.T34T 0.19 TCGA-BR-8081-01 3 58639469 58639469 G A FAM3D Missense_Mutation p.T18M 0.15 tolerated(0.28) possibly_damaging(0.742) TCGA-BR-8081-01 3 63981492 63981492 C - ATXN7 Frame_Shift_Del p.M667Cfs*8 0.17 TCGA-BR-8081-01 3 65342220 65342220 C T MAGI1 Missense_Mutation p.E1408K 0.08 deleterious_low_confidence(0.01) unknown(0) TCGA-BR-8081-01 3 8775561 8775561 C T CAV3 5'UTR 0.29 TCGA-BR-8081-01 3 9781452 9781452 C T BRPF1 Missense_Mutation p.P457S 0.21 tolerated(0.38) benign(0.004) TCGA-BR-8081-01 3 9950934 9950934 A - IL17RE Frame_Shift_Del p.K258Nfs*34 0.14 TCGA-BR-8081-01 4 100205900 100205900 G A ADH1A Missense_Mutation p.P107L 0.12 deleterious(0.02) probably_damaging(0.961) TCGA-BR-8081-01 4 10447064 10447064 G T ZNF518B Missense_Mutation p.L297M 0.17 tolerated(0.06) benign(0.087) TCGA-BR-8081-01 4 10447911 10447911 G A ZNF518B Silent p.N14N 0.18 TCGA-BR-8081-01 4 104640560 104640560 C T TACR3 Silent p.A91A 0.25 TCGA-BR-8081-01 4 113356416 113356416 T - ALPK1 Frame_Shift_Del p.W1051Gfs*36 0.16 TCGA-BR-8081-01 4 114277438 114277438 C T ANK2 Missense_Mutation p.T2555I 0.16 possibly_damaging(0.543) TCGA-BR-8081-01 4 126373367 126373367 T - FAT4 Frame_Shift_Del p.L3734Yfs*8 0.18 TCGA-BR-8081-01 4 128724950 128724950 T C HSPA4L Missense_Mutation p.M277T 0.20 deleterious(0) probably_damaging(0.998) TCGA-BR-8081-01 4 128814507 128814507 A - PLK4 Frame_Shift_Del p.S754Vfs*8 0.15 TCGA-BR-8081-01 4 134084187 134084187 T A PCDH10 Missense_Mutation p.D951E 0.06 deleterious(0.01) probably_damaging(0.99) TCGA-BR-8081-01 4 138450912 138450912 C T PCDH18 Silent p.S777S 0.11 TCGA-BR-8081-01 4 143007332 143007332 T - INPP4B Frame_Shift_Del p.R818Efs*4 0.15 TCGA-BR-8081-01 4 146044706 146044706 G A ABCE1 Missense_Mutation p.V532I 0.24 tolerated(0.12) probably_damaging(0.999) TCGA-BR-8081-01 4 146058622 146058624 CTC - OTUD4 In_Frame_Del p.R1037del 0.13 TCGA-BR-8081-01 4 148441069 148441069 T - EDNRA Frame_Shift_Del p.L164Cfs*38 0.13 TCGA-BR-8081-01 4 148827846 148827846 G A ARHGAP10 Silent p.L364L 0.14 TCGA-BR-8081-01 4 153897118 153897118 G A FHDC1 Missense_Mutation p.R892Q 0.12 deleterious(0) probably_damaging(0.934) TCGA-BR-8081-01 4 155665779 155665779 G A LRAT Missense_Mutation p.V101I 0.19 deleterious(0.01) probably_damaging(0.975) TCGA-BR-8081-01 4 175649729 175649729 C T GLRA3 Missense_Mutation p.D130N 0.13 deleterious(0) probably_damaging(0.996) TCGA-BR-8081-01 4 178283532 178283532 T - NEIL3 Frame_Shift_Del p.F577Lfs*23 0.12 TCGA-BR-8081-01 4 183713497 183713497 C T TENM3 Missense_Mutation p.A1891V 0.17 deleterious(0.03) possibly_damaging(0.739) TCGA-BR-8081-01 4 187093157 187093157 A C FAM149A 3'UTR 0.13 TCGA-BR-8081-01 4 20521061 20521061 T C SLIT2 Missense_Mutation p.F372S 0.10 tolerated(0.46) possibly_damaging(0.779) TCGA-BR-8081-01 4 22390560 22390560 C T GPR125 Missense_Mutation p.A912T 0.29 tolerated(0.08) benign(0.2) TCGA-BR-8081-01 4 2941000 2941001 TG - NOP14 Frame_Shift_Del p.H796Qfs*3 0.13 TCGA-BR-8081-01 4 38777063 38777063 G A TLR10 Missense_Mutation p.T50I 0.22 deleterious(0.03) possibly_damaging(0.834) TCGA-BR-8081-01 4 52861526 52861526 G A LRRC66 Silent p.G554G 0.15 TCGA-BR-8081-01 4 5578094 5578094 G A EVC2 Nonsense_Mutation p.Q1049* 0.21 TCGA-BR-8081-01 4 55964877 55964877 C T KDR Missense_Mutation p.R787Q 0.18 tolerated(0.36) probably_damaging(0.963) TCGA-BR-8081-01 4 6302887 6302887 G A WFS1 Silent p.T455T 0.27 TCGA-BR-8081-01 4 6325119 6325119 C T PPP2R2C Silent p.T418T 0.18 TCGA-BR-8081-01 4 6843886 6843887 - A KIAA0232 Frame_Shift_Ins p.Q111Tfs*12 0.14 TCGA-BR-8081-01 4 69184427 69184427 C T YTHDC1 Missense_Mutation p.R581Q 0.17 deleterious(0) probably_damaging(0.992) TCGA-BR-8081-01 4 72634051 72634051 C A GC Silent p.A95A 0.18 TCGA-BR-8081-01 4 74853698 74853698 A G PPBP Silent p.T41T 0.07 TCGA-BR-8081-01 4 81187971 81187971 C T FGF5 5'UTR 0.18 TCGA-BR-8081-01 4 87622904 87622904 G A PTPN13 Missense_Mutation p.R382Q 0.14 deleterious(0) possibly_damaging(0.726) TCGA-BR-8081-01 4 959075 959075 C T DGKQ Silent p.A541A 0.17 TCGA-BR-8081-01 5 110560283 110560283 C T CAMK4 Silent p.I34I 0.17 TCGA-BR-8081-01 5 112174554 112174554 A C APC Missense_Mutation p.K1088T 0.06 possibly_damaging(0.493) TCGA-BR-8081-01 5 112177857 112177857 A G APC Missense_Mutation p.K2189R 0.15 probably_damaging(0.995) TCGA-BR-8081-01 5 120022416 120022416 A - PRR16 3'UTR 0.17 TCGA-BR-8081-01 5 129241210 129241210 G A CHSY3 Missense_Mutation p.D230N 0.23 deleterious(0) probably_damaging(0.987) TCGA-BR-8081-01 5 135549172 135549172 T G TRPC7 Missense_Mutation p.K847T 0.22 tolerated(0.13) benign(0.002) TCGA-BR-8081-01 5 135692820 135692820 C T TRPC7 Missense_Mutation p.V86M 0.13 deleterious(0) probably_damaging(0.998) TCGA-BR-8081-01 5 139865292 139865292 C A ANKHD1 Missense_Mutation p.P706H 0.18 unknown(0) TCGA-BR-8081-01 5 140053863 140053863 G T HARS Silent p.G503G 0.17 TCGA-BR-8081-01 5 140166076 140166076 G A PCDHA1 Silent p.A67A 0.19 TCGA-BR-8081-01 5 140188623 140188623 C T PCDHA4 Silent p.G617G 0.14 TCGA-BR-8081-01 5 140215888 140215888 G A PCDHA7 Silent p.T640T 0.18 TCGA-BR-8081-01 5 140249016 140249016 G A PCDHA11 Missense_Mutation p.V110M 0.19 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-BR-8081-01 5 140537186 140537186 G A PCDHB17 Missense_Mutation p.R537H 0.17 deleterious_low_confidence(0.03) benign(0.149) TCGA-BR-8081-01 5 140615452 140615452 C T PCDHB18 RNA 0.18 TCGA-BR-8081-01 5 140773918 140773918 T C PCDHGA8 Missense_Mutation p.V513A 0.22 deleterious_low_confidence(0.02) benign(0.202) TCGA-BR-8081-01 5 1409934 1409934 G A SLC6A3 Missense_Mutation p.L434F 0.11 deleterious(0.03) possibly_damaging(0.651) TCGA-BR-8081-01 5 153085479 153085479 C T GRIA1 Missense_Mutation p.R569C 0.21 deleterious(0) probably_damaging(1) TCGA-BR-8081-01 5 17354466 17354466 C T CTD-2139B15.2 RNA 0.14 TCGA-BR-8081-01 5 176524326 176524326 G A FGFR4 Silent p.A729A 0.25 TCGA-BR-8081-01 5 178369727 178369727 T C ZNF454 5'UTR 0.12 TCGA-BR-8081-01 5 179042578 179042578 T A HNRNPH1 Missense_Mutation p.N440I 0.19 deleterious_low_confidence(0) benign(0.024) TCGA-BR-8081-01 5 179226099 179226099 G A MGAT4B Missense_Mutation p.A406V 0.20 tolerated(0.45) benign(0.003) TCGA-BR-8081-01 5 180219400 180219400 C T MGAT1 Nonsense_Mutation p.W191* 0.14 TCGA-BR-8081-01 5 24505238 24505238 A C CDH10 Missense_Mutation p.V459G 0.16 deleterious(0) benign(0.079) TCGA-BR-8081-01 5 32058080 32058080 G A PDZD2 Missense_Mutation p.A691T 0.17 deleterious(0) benign(0.085) TCGA-BR-8081-01 5 35700715 35700715 A - SPEF2 Frame_Shift_Del p.A756Hfs*29 0.18 TCGA-BR-8081-01 5 3599501 3599501 A G IRX1 Missense_Mutation p.N147D 0.13 deleterious(0.02) benign(0.242) TCGA-BR-8081-01 5 37701207 37701208 - T WDR70 Frame_Shift_Ins p.S416Ffs*13 0.15 TCGA-BR-8081-01 5 39382876 39382876 C T DAB2 Silent p.P395P 0.18 TCGA-BR-8081-01 5 40681632 40681632 G A PTGER4 Silent p.T179T 0.23 TCGA-BR-8081-01 5 40955513 40955513 G A C7 Missense_Mutation p.G373E 0.10 tolerated(0.1) probably_damaging(0.979) TCGA-BR-8081-01 5 427768 427768 C A AHRR Missense_Mutation p.A246D 0.20 tolerated_low_confidence(0.63) benign(0.151) TCGA-BR-8081-01 5 434269 434269 G A AHRR Missense_Mutation p.G494S 0.21 tolerated(0.85) benign(0.001) TCGA-BR-8081-01 5 43506054 43506054 G A C5orf34 Missense_Mutation p.S243F 0.20 deleterious(0) probably_damaging(0.938) TCGA-BR-8081-01 5 482775 482775 C T SLC9A3 Missense_Mutation p.R415H 0.21 deleterious(0) probably_damaging(0.992) TCGA-BR-8081-01 5 5232611 5232611 G A ADAMTS16 Missense_Mutation p.R611H 0.06 deleterious(0) probably_damaging(0.998) TCGA-BR-8081-01 5 54404137 54404137 A G GZMA Missense_Mutation p.D181G 0.25 tolerated(0.11) benign(0.279) TCGA-BR-8081-01 5 66456371 66456371 C T MAST4 Missense_Mutation p.R1246W 0.17 probably_damaging(1) TCGA-BR-8081-01 5 68687822 68687822 A G RAD17 Missense_Mutation p.K402E 0.21 deleterious(0.01) probably_damaging(0.991) TCGA-BR-8081-01 5 71756247 71756247 G A ZNF366 Silent p.H359H 0.17 TCGA-BR-8081-01 5 74028900 74028900 G A GFM2 Missense_Mutation p.L512F 0.13 deleterious(0.02) probably_damaging(0.999) TCGA-BR-8081-01 5 74698880 74698880 C A COL4A3BP Missense_Mutation p.G440C 0.08 deleterious(0) probably_damaging(1) TCGA-BR-8081-01 5 79368029 79368029 G A THBS4 Intron 0.19 TCGA-BR-8081-01 5 89953947 89953947 A G GPR98 Missense_Mutation p.E1535G 0.05 probably_damaging(0.932) TCGA-BR-8081-01 6 101077033 101077033 C T ASCC3 Silent p.V1411V 0.09 TCGA-BR-8081-01 6 10398529 10398529 G A TFAP2A 3'UTR 0.15 TCGA-BR-8081-01 6 108492665 108492665 G A NR2E1 Missense_Mutation p.R10H 0.12 deleterious(0.04) probably_damaging(0.997) TCGA-BR-8081-01 6 109867151 109867151 G A AK9 Silent p.N1048N 0.21 TCGA-BR-8081-01 6 111896928 111896928 C T TRAF3IP2 Silent p.P373P 0.09 TCGA-BR-8081-01 6 118015303 118015303 A G NUS1 Silent p.R217R 0.14 TCGA-BR-8081-01 6 119669917 119669917 C T MAN1A1 Missense_Mutation p.R105H 0.11 tolerated(0.39) benign(0.128) TCGA-BR-8081-01 6 12124092 12124092 A G HIVEP1 Missense_Mutation p.N1355S 0.17 tolerated(0.88) benign(0.003) TCGA-BR-8081-01 6 127796990 127796990 G A SOGA3 Silent p.R727R 0.07 TCGA-BR-8081-01 6 139694831 139694831 G - CITED2 Frame_Shift_Del p.P84Rfs*63 0.15 TCGA-BR-8081-01 6 143082658 143082659 - T HIVEP2 Frame_Shift_Ins p.C1855Mfs*13 0.16 TCGA-BR-8081-01 6 143091558 143091558 G A HIVEP2 Nonsense_Mutation p.R1440* 0.16 TCGA-BR-8081-01 6 152671800 152671800 T - SYNE1 Frame_Shift_Del p.I3896* 0.10 TCGA-BR-8081-01 6 155574136 155574136 C T TIAM2 Missense_Mutation p.R1392C 0.18 deleterious(0.02) benign(0.294) TCGA-BR-8081-01 6 155581523 155581523 G A TFB1M Silent p.G226G 0.20 TCGA-BR-8081-01 6 158924562 158924563 - C TULP4 Frame_Shift_Ins p.L1291Pfs*65 0.19 TCGA-BR-8081-01 6 163149256 163149256 T G PACRG 5'UTR 0.23 TCGA-BR-8081-01 6 168999659 168999659 C T SMOC2 Missense_Mutation p.R278C 0.25 deleterious(0) probably_damaging(0.961) TCGA-BR-8081-01 6 170105213 170105213 T - C6orf120 3'UTR 0.21 TCGA-BR-8081-01 6 26046023 26046023 C T HIST1H3C Missense_Mutation p.R129C 0.13 tolerated_low_confidence(0.06) possibly_damaging(0.836) TCGA-BR-8081-01 6 26390383 26390383 A - BTN2A2 Frame_Shift_Del p.K294Rfs*56 0.16 TCGA-BR-8081-01 6 28540669 28540669 G A SCAND3 Silent p.C999C 0.23 TCGA-BR-8081-01 6 29394924 29394924 G T OR11A1 Silent p.A165A 0.27 TCGA-BR-8081-01 6 30166814 30166814 G T TRIM26 Missense_Mutation p.L23M 0.13 deleterious(0) probably_damaging(1) TCGA-BR-8081-01 6 30621048 30621048 T - DHX16 Frame_Shift_Del p.I1033* 0.12 TCGA-BR-8081-01 6 3077208 3077208 C A RIPK1 Missense_Mutation p.P51T 0.16 deleterious(0) probably_damaging(0.952) TCGA-BR-8081-01 6 30955787 30955787 T G MUC21 Missense_Mutation p.L506R 0.17 tolerated(0.06) probably_damaging(0.996) TCGA-BR-8081-01 6 31525449 31525449 G A NFKBIL1 Missense_Mutation p.A127T 0.18 tolerated(0.07) possibly_damaging(0.854) TCGA-BR-8081-01 6 33163388 33163388 G A RXRB Silent p.R405R 0.20 TCGA-BR-8081-01 6 33424018 33424018 G A ZBTB9 Missense_Mutation p.G381R 0.12 deleterious(0.01) probably_damaging(1) TCGA-BR-8081-01 6 34512112 34512112 G A SPDEF Missense_Mutation p.R41W 0.31 tolerated_low_confidence(0.2) benign(0.004) TCGA-BR-8081-01 6 35259412 35259412 C T ZNF76 Missense_Mutation p.R277C 0.17 deleterious(0) probably_damaging(1) TCGA-BR-8081-01 6 36475326 36475326 A G STK38 Silent p.H241H 0.20 TCGA-BR-8081-01 6 36946332 36946332 G T MTCH1 Silent p.P154P 0.12 TCGA-BR-8081-01 6 37613720 37613720 G A MDGA1 Missense_Mutation p.P746L 0.13 deleterious(0.03) possibly_damaging(0.557) TCGA-BR-8081-01 6 38084410 38084410 C T ZFAND3 Missense_Mutation p.R142W 0.13 deleterious(0.02) possibly_damaging(0.776) TCGA-BR-8081-01 6 39869739 39869739 C T DAAM2 Missense_Mutation p.R1045C 0.15 deleterious(0) probably_damaging(0.997) TCGA-BR-8081-01 6 41712453 41712453 A T PGC Silent p.A51A 0.12 TCGA-BR-8081-01 6 41900303 41900303 C T BYSL Silent p.A391A 0.15 TCGA-BR-8081-01 6 43166460 43166460 C T CUL9 Missense_Mutation p.R973C 0.16 tolerated(0.14) benign(0.001) TCGA-BR-8081-01 6 46656498 46656498 C T TDRD6 Silent p.R211R 0.16 TCGA-BR-8081-01 6 46661523 46661523 C T TDRD6 Silent p.G1886G 0.15 TCGA-BR-8081-01 6 52878462 52878462 A G ICK Missense_Mutation p.S384P 0.15 tolerated(0.32) benign(0) TCGA-BR-8081-01 6 76018593 76018593 G T FILIP1 Silent p.S1152S 0.23 TCGA-BR-8081-01 6 79752650 79752650 A G PHIP Silent p.Y170Y 0.15 TCGA-BR-8081-01 6 80751905 80751905 A G TTK Missense_Mutation p.R854G 0.20 tolerated_low_confidence(0.16) benign(0) TCGA-BR-8081-01 6 84417539 84417539 G A SNAP91 Silent p.G36G 0.11 TCGA-BR-8081-01 6 87970331 87970331 A - ZNF292 Frame_Shift_Del p.M2330Cfs*12 0.12 TCGA-BR-8081-01 6 88138405 88138405 G T C6ORF165 Missense_Mutation p.G341V 0.17 deleterious(0) benign(0.139) TCGA-BR-8081-01 6 90097137 90097137 G A RRAGD Silent p.N107N 0.16 TCGA-BR-8081-01 6 90461284 90461284 T G MDN1 Missense_Mutation p.K1031N 0.12 benign(0.017) TCGA-BR-8081-01 6 90573907 90573907 G A CASP8AP2 RNA 0.24 TCGA-BR-8081-01 6 99848583 99848584 - T PNISR Frame_Shift_Ins p.H751Tfs*5 0.15 TCGA-BR-8081-01 7 100085884 100085884 C - NYAP1 Frame_Shift_Del p.P182Qfs*21 0.15 TCGA-BR-8081-01 7 100676090 100676090 G A MUC17 Missense_Mutation p.A465T 0.19 possibly_damaging(0.86) TCGA-BR-8081-01 7 101840004 101840004 C T CUX1 Missense_Mutation p.P449L 0.15 deleterious(0.05) unknown(0) TCGA-BR-8081-01 7 102835961 102835961 C T DPY19L2P2 RNA 0.12 TCGA-BR-8081-01 7 103179672 103179672 G A RELN Missense_Mutation p.P2345S 0.12 tolerated(0.12) benign(0.031) TCGA-BR-8081-01 7 105135657 105135657 G T PUS7 Nonsense_Mutation p.C258* 0.15 TCGA-BR-8081-01 7 11441596 11441596 C A THSD7A Splice_Site p.X1413_splice 0.07 TCGA-BR-8081-01 7 117432324 117432324 G T CTTNBP2 Missense_Mutation p.T309K 0.17 deleterious(0) probably_damaging(0.979) TCGA-BR-8081-01 7 121755182 121755182 G A AASS Missense_Mutation p.A330V 0.21 tolerated(0.41) benign(0.007) TCGA-BR-8081-01 7 123332484 123332485 - T WASL Frame_Shift_Ins p.V422Sfs*31 0.19 TCGA-BR-8081-01 7 127014561 127014561 G A ZNF800 Missense_Mutation p.R277C 0.18 deleterious(0) possibly_damaging(0.719) TCGA-BR-8081-01 7 127669515 127669515 G T LRRC4 Missense_Mutation p.S393R 0.10 tolerated(0.38) benign(0.09) TCGA-BR-8081-01 7 129096467 129096467 G A STRIP2 Missense_Mutation p.R341H 0.11 tolerated(0.14) benign(0.089) TCGA-BR-8081-01 7 134254170 134254170 G A AKR1B15 Nonsense_Mutation p.W108* 0.11 TCGA-BR-8081-01 7 138552754 138552754 G - KIAA1549 Frame_Shift_Del p.G1633Afs*78 0.24 TCGA-BR-8081-01 7 138566238 138566238 C T KIAA1549 Silent p.A1375A 0.13 TCGA-BR-8081-01 7 138603140 138603140 G A KIAA1549 Missense_Mutation p.P411L 0.19 tolerated(0.05) benign(0.005) TCGA-BR-8081-01 7 140107546 140107546 G T RAB19 Missense_Mutation p.V34L 0.25 tolerated(0.1) benign(0.189) TCGA-BR-8081-01 7 142378785 142378785 T C MTRNR2L6 3'Flank 0.20 TCGA-BR-8081-01 7 143092451 143092451 G T EPHA1 Missense_Mutation p.H682N 0.05 deleterious(0.02) probably_damaging(1) TCGA-BR-8081-01 7 150759083 150759083 C T SLC4A2 Silent p.S3S 0.16 TCGA-BR-8081-01 7 150774877 150774877 G T FASTK Intron 0.28 TCGA-BR-8081-01 7 151135100 151135100 G T CRYGN Silent p.S84S 0.15 TCGA-BR-8081-01 7 1523451 1523451 G A INTS1 Silent p.S1156S 0.18 TCGA-BR-8081-01 7 156762322 156762322 C T NOM1 Silent p.D836D 0.11 TCGA-BR-8081-01 7 1590549 1590549 C T TMEM184A Missense_Mutation p.V97M 0.18 deleterious(0) probably_damaging(0.989) TCGA-BR-8081-01 7 24874117 24874117 G T OSBPL3 Silent p.P578P 0.11 TCGA-BR-8081-01 7 2752350 2752350 C T AMZ1 Silent p.G445G 0.15 TCGA-BR-8081-01 7 31690787 31690787 C T CCDC129 Missense_Mutation p.T898M 0.16 tolerated(0.48) benign(0.038) TCGA-BR-8081-01 7 37960699 37960699 T C EPDR1 Missense_Mutation p.V53A 0.31 tolerated(0.16) benign(0.358) TCGA-BR-8081-01 7 4201429 4201429 C - SDK1 Frame_Shift_Del p.P1582Rfs*15 0.12 TCGA-BR-8081-01 7 44153500 44153500 C T AEBP1 Silent p.N1039N 0.20 TCGA-BR-8081-01 7 45632428 45632428 G A ADCY1 Missense_Mutation p.R237H 0.13 tolerated(0.17) probably_damaging(0.962) TCGA-BR-8081-01 7 45742987 45742987 C T ADCY1 Nonsense_Mutation p.R823* 0.24 TCGA-BR-8081-01 7 47851593 47851593 C T PKD1L1 Missense_Mutation p.S2468N 0.47 tolerated(0.37) benign(0.025) TCGA-BR-8081-01 7 47944773 47944773 T - PKD1L1 Frame_Shift_Del p.R558Dfs*10 0.17 TCGA-BR-8081-01 7 55752957 55752957 C T RNU6-389P 5'Flank 0.11 TCGA-BR-8081-01 7 56007543 56007543 T C ZNF713 Silent p.H379H 0.26 TCGA-BR-8081-01 7 56066816 56066816 C T GBAS 3'UTR 0.16 TCGA-BR-8081-01 7 6026895 6026895 C T PMS2 Missense_Mutation p.V501M 0.19 tolerated(0.05) benign(0.008) TCGA-BR-8081-01 7 6042145 6042145 A G PMS2 Missense_Mutation p.V159A 0.14 deleterious(0) probably_damaging(0.95) TCGA-BR-8081-01 7 618981 618981 G A PRKAR1B Missense_Mutation p.A268V 0.18 deleterious(0.02) probably_damaging(0.978) TCGA-BR-8081-01 7 65225435 65225435 C T SNORA22 3'Flank 0.20 TCGA-BR-8081-01 7 72281204 72281204 G A TYW1B Silent p.D95D 0.16 TCGA-BR-8081-01 7 72409181 72409181 C - POM121 Frame_Shift_Del p.R179Afs*12 0.14 TCGA-BR-8081-01 7 72658286 72658286 G - GTF2IRD2P1 RNA 0.14 TCGA-BR-8081-01 7 73153053 73153053 G A ABHD11 Silent p.G25G 0.31 TCGA-BR-8081-01 7 73280112 73280112 T C WBSCR28 Missense_Mutation p.V236A 0.25 tolerated(1) benign(0) TCGA-BR-8081-01 7 75045691 75045691 C T POM121C 3'Flank 0.20 TCGA-BR-8081-01 7 86978480 86978480 A - CROT Frame_Shift_Del p.K34Nfs*13 0.19 TCGA-BR-8081-01 7 88963218 88963218 G A ZNF804B Missense_Mutation p.D308N 0.14 tolerated(0.22) benign(0.007) TCGA-BR-8081-01 7 92733171 92733171 G A SAMD9 Missense_Mutation p.A747V 0.19 deleterious(0) probably_damaging(0.977) TCGA-BR-8081-01 7 94041414 94041414 C T COL1A2 Missense_Mutation p.A462V 0.21 possibly_damaging(0.904) TCGA-BR-8081-01 7 95499216 95499216 C A DYNC1I1 Silent p.G149G 0.14 TCGA-BR-8081-01 7 98540640 98540640 C T TRRAP Silent p.N1491N 0.12 TCGA-BR-8081-01 7 98574288 98574288 G A TRRAP Silent p.T2707T 0.15 TCGA-BR-8081-01 7 99453290 99453290 A - CYP3A43 Frame_Shift_Del p.N251Ifs*6 0.09 TCGA-BR-8081-01 7 99811816 99811816 C T STAG3 3'UTR 0.27 TCGA-BR-8081-01 8 103220371 103220371 G A RRM2B Missense_Mutation p.A349V 0.28 tolerated_low_confidence(0.17) benign(0.066) TCGA-BR-8081-01 8 103289205 103289205 A G UBR5 Silent p.S2168S 0.12 TCGA-BR-8081-01 8 103855874 103855874 C A AZIN1 Nonsense_Mutation p.G3* 0.08 TCGA-BR-8081-01 8 105503269 105503269 G A LRP12 Missense_Mutation p.R738C 0.21 deleterious(0) possibly_damaging(0.891) TCGA-BR-8081-01 8 107715191 107715191 A - OXR1 Frame_Shift_Del p.N247Mfs*22 0.12 TCGA-BR-8081-01 8 11282093 11282093 C T FAM167A Missense_Mutation p.R145H 0.17 deleterious(0.04) probably_damaging(1) TCGA-BR-8081-01 8 118184942 118184942 C T SLC30A8 3'UTR 0.16 TCGA-BR-8081-01 8 124664881 124664881 C - KLHL38 Frame_Shift_Del p.E96Rfs*12 0.22 TCGA-BR-8081-01 8 12957132 12957132 T G DLC1 Missense_Mutation p.E905A 0.22 tolerated(0.16) probably_damaging(0.936) TCGA-BR-8081-01 8 140631097 140631097 C T KCNK9 Missense_Mutation p.A177T 0.18 deleterious(0.03) possibly_damaging(0.49) TCGA-BR-8081-01 8 142202652 142202652 G T DENND3 Nonsense_Mutation p.G1096* 0.10 TCGA-BR-8081-01 8 144945087 144945087 G T EPPK1 Missense_Mutation p.L779M 0.15 benign(0.123) TCGA-BR-8081-01 8 144993009 144993010 GA - PLEC Frame_Shift_Del p.L3797Rfs*15 0.20 TCGA-BR-8081-01 8 145638296 145638296 G A SLC39A4 Silent p.S554S 0.18 TCGA-BR-8081-01 8 17579227 17579228 - C MTUS1 Intron 0.08 TCGA-BR-8081-01 8 2064029 2064029 A C MYOM2 Missense_Mutation p.E1115D 0.15 tolerated(0.32) benign(0.002) TCGA-BR-8081-01 8 22053003 22053003 C T BMP1 Silent p.R556R 0.13 TCGA-BR-8081-01 8 23002133 23002133 G A TNFRSF10D Missense_Mutation p.R262C 0.14 tolerated(0.22) benign(0) TCGA-BR-8081-01 8 23198632 23198632 C T LOXL2 Missense_Mutation p.V206M 0.12 deleterious(0.01) probably_damaging(0.939) TCGA-BR-8081-01 8 26221281 26221281 G A PPP2R2A Missense_Mutation p.E293K 0.16 deleterious(0.01) benign(0.21) TCGA-BR-8081-01 8 27321182 27321182 C T CHRNA2 Missense_Mutation p.V260I 0.21 tolerated(0.75) benign(0.056) TCGA-BR-8081-01 8 28974486 28974486 G A KIF13B Silent p.G1233G 0.28 TCGA-BR-8081-01 8 29035015 29035015 C T KIF13B Silent p.G267G 0.12 TCGA-BR-8081-01 8 3253820 3253820 C T CSMD1 Missense_Mutation p.G830D 0.27 probably_damaging(1) TCGA-BR-8081-01 8 37704629 37704629 C T BRF2 Silent p.A93A 0.16 TCGA-BR-8081-01 8 41522449 41522449 C - ANK1 Intron 0.12 TCGA-BR-8081-01 8 42323320 42323320 C T SLC20A2 Silent p.V135V 0.19 TCGA-BR-8081-01 8 52284448 52284448 G T PXDNL Missense_Mutation p.Q1296K 0.17 tolerated(0.17) benign(0.097) TCGA-BR-8081-01 8 54742014 54742014 T A ATP6V1H Missense_Mutation p.D99V 0.16 deleterious(0) probably_damaging(1) TCGA-BR-8081-01 8 55537789 55537789 C T RP1 Silent p.P449P 0.17 TCGA-BR-8081-01 8 57025637 57025637 G A MOS Missense_Mutation p.A302V 0.17 tolerated(0.16) probably_damaging(0.932) TCGA-BR-8081-01 8 6266828 6266828 A G MCPH1 Silent p.S17S 0.11 TCGA-BR-8081-01 8 67577678 67577678 T C VCPIP1 Missense_Mutation p.K506E 0.16 tolerated(0.07) benign(0.406) TCGA-BR-8081-01 8 68184034 68184034 T - ARFGEF1 Frame_Shift_Del p.N492Mfs*28 0.12 TCGA-BR-8081-01 8 70617426 70617426 G T SLCO5A1 Missense_Mutation p.L488I 0.14 tolerated(0.21) possibly_damaging(0.506) TCGA-BR-8081-01 8 73850335 73850335 A - KCNB2 3'UTR 0.10 TCGA-BR-8081-01 8 75276270 75276270 G A GDAP1 Missense_Mutation p.V249I 0.17 tolerated(0.24) benign(0.047) TCGA-BR-8081-01 8 77775599 77775599 A - ZFHX4 Frame_Shift_Del p.E3219Rfs*15 0.13 TCGA-BR-8081-01 8 8234263 8234263 T C SGK223 Silent p.V552V 0.21 TCGA-BR-8081-01 8 8234544 8234544 G A SGK223 Missense_Mutation p.R459W 0.18 benign(0.002) TCGA-BR-8081-01 8 82391069 82391069 C T FABP4 3'UTR 0.14 TCGA-BR-8081-01 8 86240752 86240752 G T CA1 3'UTR 0.22 TCGA-BR-8081-01 8 94746562 94746562 G A RBM12B Nonsense_Mutation p.R693* 0.15 TCGA-BR-8081-01 8 95837172 95837172 C A INTS8 Missense_Mutation p.P61H 0.09 deleterious(0.02) probably_damaging(0.935) TCGA-BR-8081-01 8 99168468 99168468 A - POP1 Frame_Shift_Del p.T752Lfs*12 0.10 TCGA-BR-8081-01 8 99440481 99440481 G A KCNS2 Missense_Mutation p.V92I 0.17 tolerated(0.29) probably_damaging(0.989) TCGA-BR-8081-01 9 101552769 101552769 A G ANKS6 Missense_Mutation p.V160A 0.18 tolerated(0.08) benign(0.12) TCGA-BR-8081-01 9 101599309 101599309 T - GALNT12 Frame_Shift_Del p.F365Sfs*46 0.09 TCGA-BR-8081-01 9 111644449 111644449 G T IKBKAP Missense_Mutation p.L1081I 0.13 tolerated(0.24) benign(0.049) TCGA-BR-8081-01 9 111746708 111746708 T A CTNNAL1 Missense_Mutation p.K216N 0.13 deleterious(0.02) probably_damaging(1) TCGA-BR-8081-01 9 116053175 116053175 C T PRPF4 Intron 0.27 TCGA-BR-8081-01 9 116269637 116269637 G A RGS3 Missense_Mutation p.G386R 0.18 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-BR-8081-01 9 117405501 117405501 C T C9orf91 Nonsense_Mutation p.R313* 0.17 TCGA-BR-8081-01 9 117846648 117846648 C T TNC Silent p.T657T 0.25 TCGA-BR-8081-01 9 119460295 119460295 A G TRIM32 Missense_Mutation p.S92G 0.06 tolerated(0.78) benign(0) TCGA-BR-8081-01 9 125281745 125281745 A G OR1J4 Missense_Mutation p.D109G 0.18 tolerated_low_confidence(0.74) benign(0.003) TCGA-BR-8081-01 9 126783526 126783526 C T LHX2 Silent p.D292D 0.11 TCGA-BR-8081-01 9 130223460 130223460 C T LRSAM1 Silent p.N110N 0.14 TCGA-BR-8081-01 9 131038608 131038608 C T SWI5 Missense_Mutation p.P62S 0.29 tolerated_low_confidence(0.2) possibly_damaging(0.857) TCGA-BR-8081-01 9 13150616 13150616 C T MPDZ Missense_Mutation p.R1175Q 0.17 deleterious(0) possibly_damaging(0.864) TCGA-BR-8081-01 9 131830576 131830576 C T FAM73B Missense_Mutation p.R457W 0.17 deleterious(0) probably_damaging(0.999) TCGA-BR-8081-01 9 131862207 131862207 G A CRAT Silent p.Y341Y 0.23 TCGA-BR-8081-01 9 132630616 132630616 G A USP20 Silent p.S341S 0.12 TCGA-BR-8081-01 9 135553410 135553410 C T GTF3C4 Missense_Mutation p.A135V 0.19 tolerated(0.5) benign(0.061) TCGA-BR-8081-01 9 136208458 136208458 G A MED22 Missense_Mutation p.S167L 0.12 deleterious_low_confidence(0.01) benign(0.015) TCGA-BR-8081-01 9 136528867 136528867 T G SARDH 3'UTR 0.21 TCGA-BR-8081-01 9 139272011 139272011 G T SNAPC4 Missense_Mutation p.A1423D 0.19 tolerated(0.19) benign(0.143) TCGA-BR-8081-01 9 139287157 139287157 G A SNAPC4 Silent p.G235G 0.13 TCGA-BR-8081-01 9 139358902 139358902 C T SEC16A Silent p.Q1472Q 0.11 TCGA-BR-8081-01 9 139612048 139612048 G A FAM69B Missense_Mutation p.R28K 0.26 tolerated(0.52) benign(0.009) TCGA-BR-8081-01 9 140243958 140243958 G - EXD3 Frame_Shift_Del p.P507Qfs*9 0.23 TCGA-BR-8081-01 9 140508544 140508544 G A ARRDC1 Missense_Mutation p.V166M 0.18 deleterious(0.03) probably_damaging(0.932) TCGA-BR-8081-01 9 14813042 14813042 C T FREM1 Silent p.E887E 0.22 TCGA-BR-8081-01 9 21367455 21367455 T C IFNA13 Silent p.R185R 0.08 TCGA-BR-8081-01 9 2829847 2829847 T C KIAA0020 Missense_Mutation p.N260S 0.16 deleterious(0.01) benign(0.137) TCGA-BR-8081-01 9 3225156 3225156 G A RFX3 Silent p.L712L 0.15 TCGA-BR-8081-01 9 33073797 33073797 G A SMU1 Missense_Mutation p.R12C 0.20 deleterious(0.03) probably_damaging(0.988) TCGA-BR-8081-01 9 35713993 35713993 G A TLN1 Missense_Mutation p.A1069V 0.09 tolerated(0.3) benign(0.075) TCGA-BR-8081-01 9 37126323 37126323 A C ZCCHC7 5'UTR 0.13 TCGA-BR-8081-01 9 4118080 4118080 C T GLIS3 Silent p.A466A 0.21 TCGA-BR-8081-01 9 5072572 5072572 T C JAK2 Silent p.H574H 0.25 TCGA-BR-8081-01 9 70993145 70993145 A G PGM5 Missense_Mutation p.I98V 0.09 deleterious(0.01) possibly_damaging(0.573) TCGA-BR-8081-01 9 73233803 73233803 G A TRPM3 Missense_Mutation p.R768C 0.14 deleterious(0) probably_damaging(0.984) TCGA-BR-8081-01 9 78803568 78803568 A G PCSK5 Missense_Mutation p.H786R 0.13 deleterious(0.01) probably_damaging(0.998) TCGA-BR-8081-01 9 78925658 78925658 A G PCSK5 Missense_Mutation p.T1232A 0.09 tolerated(0.72) benign(0) TCGA-BR-8081-01 9 80336284 80336284 C A GNAQ Missense_Mutation p.K345N 0.19 tolerated(0.06) probably_damaging(0.955) TCGA-BR-8081-01 9 87285544 87285544 G A NTRK2 5'UTR 0.12 TCGA-BR-8081-01 9 90585494 90585494 G A CDK20 Silent p.G184G 0.24 TCGA-BR-8081-01 9 95228784 95228784 G A ASPN Nonsense_Mutation p.R153* 0.14 TCGA-BR-8081-01 9 95236979 95236979 A - ASPN Frame_Shift_Del p.P68Hfs*24 0.17 TCGA-BR-8081-01 9 96055372 96055372 C A WNK2 Silent p.S1912S 0.25 TCGA-BR-8081-01 X 100117698 100117698 T - NOX1 Frame_Shift_Del p.K150Rfs*6 0.14 TCGA-BR-8081-01 X 10077877 10077877 C T WWC3 Missense_Mutation p.A264V 0.16 tolerated(0.61) benign(0.329) TCGA-BR-8081-01 X 100809163 100809163 T - ARMCX1 Frame_Shift_Del p.F419Sfs*16 0.09 TCGA-BR-8081-01 X 102586399 102586399 G A TCEAL7 Missense_Mutation p.R23H 0.29 tolerated(0.48) benign(0) TCGA-BR-8081-01 X 103220212 103220212 T - TMSB15B 3'UTR 0.19 TCGA-BR-8081-01 X 106186092 106186093 CT - MORC4 Frame_Shift_Del p.G677* 0.16 TCGA-BR-8081-01 X 107169389 107169389 C T MID2 Nonsense_Mutation p.Q555* 0.19 TCGA-BR-8081-01 X 107423838 107423838 G A COL4A6 Nonsense_Mutation p.R681* 0.11 TCGA-BR-8081-01 X 107683354 107683354 G C COL4A5 5'UTR 0.09 TCGA-BR-8081-01 X 108635326 108635326 A G GUCY2F Silent p.V865V 0.16 TCGA-BR-8081-01 X 11790307 11790307 C - MSL3 Frame_Shift_Del p.P440Qfs*22 0.11 TCGA-BR-8081-01 X 118540544 118540544 C A SLC25A43 Silent p.R133R 0.23 TCGA-BR-8081-01 X 123787483 123787483 G T TENM1 Missense_Mutation p.S440Y 0.14 deleterious(0) possibly_damaging(0.629) TCGA-BR-8081-01 X 129147983 129147983 C T BCORL1 Missense_Mutation p.P412L 0.29 unknown(0) TCGA-BR-8081-01 X 129364678 129364678 A G ZNF280C Silent p.T265T 0.21 TCGA-BR-8081-01 X 129370542 129370543 - T ZNF280C Frame_Shift_Ins p.P189Tfs*5 0.20 TCGA-BR-8081-01 X 12939421 12939421 C T TLR8 Silent p.S754S 0.22 TCGA-BR-8081-01 X 130222661 130222661 G T ARHGAP36 Nonsense_Mutation p.G516* 0.14 TCGA-BR-8081-01 X 132092382 132092382 G A HS6ST2 Silent p.C83C 0.27 TCGA-BR-8081-01 X 134156235 134156235 C A FAM127C Missense_Mutation p.K85N 0.20 deleterious(0.02) benign(0.326) TCGA-BR-8081-01 X 135314030 135314030 G - MAP7D3 Frame_Shift_Del p.E363Sfs*2 0.18 TCGA-BR-8081-01 X 139038625 139038625 T - CXorf66 Frame_Shift_Del p.K172Nfs*2 0.18 TCGA-BR-8081-01 X 147062865 147062865 C T FMR1NB 5'UTR 0.13 TCGA-BR-8081-01 X 148797716 148797716 G A MAGEA11 Silent p.G190G 0.23 TCGA-BR-8081-01 X 151303922 151303922 A G MAGEA10 Silent p.S57S 0.16 TCGA-BR-8081-01 X 152915674 152915674 G - DUSP9 Frame_Shift_Del p.Q359Rfs*77 0.19 TCGA-BR-8081-01 X 153128940 153128940 G A L1CAM Silent p.G1174G 0.34 TCGA-BR-8081-01 X 153228708 153228708 C T HCFC1 Missense_Mutation p.C227Y 0.09 deleterious(0.03) probably_damaging(0.997) TCGA-BR-8081-01 X 153714222 153714222 G A UBL4A Missense_Mutation p.A84V 0.18 tolerated(0.08) benign(0.075) TCGA-BR-8081-01 X 1584880 1584880 G A P2RY8 Missense_Mutation p.A191V 0.12 tolerated(0.14) benign(0.078) TCGA-BR-8081-01 X 16142438 16142438 T C GRPR Missense_Mutation p.L121P 0.19 deleterious(0) probably_damaging(0.981) TCGA-BR-8081-01 X 16717193 16717193 C T CTPS2 Missense_Mutation p.G64S 0.13 deleterious(0) probably_damaging(0.998) TCGA-BR-8081-01 X 16778386 16778386 G T SYAP1 Missense_Mutation p.Q321H 0.18 deleterious(0) probably_damaging(0.999) TCGA-BR-8081-01 X 19610206 19610206 G A SH3KBP1 Missense_Mutation p.P373S 0.18 deleterious(0) benign(0.003) TCGA-BR-8081-01 X 23397938 23397938 C T PTCHD1 Silent p.G194G 0.08 TCGA-BR-8081-01 X 24226349 24226349 G A ZFX Missense_Mutation p.A319T 0.18 tolerated(0.59) probably_damaging(0.953) TCGA-BR-8081-01 X 27999217 27999217 C T DCAF8L1 Missense_Mutation p.V79I 0.13 tolerated_low_confidence(0.54) benign(0.005) TCGA-BR-8081-01 X 31986498 31986498 C T DMD Missense_Mutation p.R2191Q 0.19 benign(0.417) TCGA-BR-8081-01 X 32481587 32481587 A C DMD Missense_Mutation p.L1134R 0.23 probably_damaging(0.996) TCGA-BR-8081-01 X 37655252 37655252 A G CYBB Missense_Mutation p.T178A 0.07 deleterious(0.03) possibly_damaging(0.896) TCGA-BR-8081-01 X 40522275 40522275 G A MED14 Missense_Mutation p.P1196S 0.15 tolerated(0.08) possibly_damaging(0.554) TCGA-BR-8081-01 X 41420817 41420817 T - CASK Frame_Shift_Del p.M555Cfs*63 0.22 TCGA-BR-8081-01 X 46387797 46387797 G A ZNF674 Missense_Mutation p.R76W 0.21 tolerated(0.31) benign(0) TCGA-BR-8081-01 X 48417659 48417659 C T TBC1D25 Silent p.H210H 0.28 TCGA-BR-8081-01 X 48674553 48674553 A G HDAC6 Missense_Mutation p.H500R 0.20 deleterious(0) probably_damaging(0.998) TCGA-BR-8081-01 X 48759692 48759692 C T PQBP1 Missense_Mutation p.R159W 0.15 deleterious(0.01) possibly_damaging(0.898) TCGA-BR-8081-01 X 48933234 48933234 C T WDR45 Missense_Mutation p.R233H 0.13 deleterious(0) probably_damaging(1) TCGA-BR-8081-01 X 48973467 48973467 A G GPKOW Missense_Mutation p.V277A 0.11 tolerated(0.14) benign(0.003) TCGA-BR-8081-01 X 50136226 50136226 C T DGKK RNA 0.37 TCGA-BR-8081-01 X 53240993 53240993 A G KDM5C Silent p.A406A 0.17 TCGA-BR-8081-01 X 53279577 53279577 G A IQSEC2 Silent p.T727T 0.28 TCGA-BR-8081-01 X 54209257 54209257 C T FAM120C Silent p.A125A 0.27 TCGA-BR-8081-01 X 54986275 54986275 C T PFKFB1 Silent p.E123E 0.22 TCGA-BR-8081-01 X 55042055 55042055 C T ALAS2 Missense_Mutation p.R375H 0.11 deleterious(0.02) probably_damaging(0.997) TCGA-BR-8081-01 X 55052394 55052394 G A ALAS2 Missense_Mutation p.L14F 0.16 deleterious(0.04) benign(0.163) TCGA-BR-8081-01 X 55515175 55515175 G A USP51 Silent p.P66P 0.20 TCGA-BR-8081-01 X 5821701 5821701 A T NLGN4X Missense_Mutation p.F340I 0.09 deleterious(0) probably_damaging(0.985) TCGA-BR-8081-01 X 64887722 64887722 T C MSN Splice_Site p.X4_splice 0.17 TCGA-BR-8081-01 X 69502190 69502190 C T RAB41 Silent p.S41S 0.12 TCGA-BR-8081-01 X 70149828 70149828 C T SLC7A3 Missense_Mutation p.R7H 0.15 tolerated(0.84) benign(0.003) TCGA-BR-8081-01 X 70316714 70316714 G T FOXO4 Missense_Mutation p.Q112H 0.24 deleterious(0) probably_damaging(0.935) TCGA-BR-8081-01 X 70326403 70326403 A G CXorf65 Missense_Mutation p.F2L 0.13 deleterious(0) probably_damaging(0.998) TCGA-BR-8081-01 X 70356410 70356410 A C MED12 Missense_Mutation p.T1769P 0.30 benign(0) TCGA-BR-8081-01 X 75004754 75004754 G - MAGEE2 Frame_Shift_Del p.Q45Sfs*27 0.16 TCGA-BR-8081-01 X 77267084 77267084 T C ATP7A Silent p.L695L 0.14 TCGA-BR-8081-01 X 92927974 92927974 C T NAP1L3 Silent p.A110A 0.11 TCGA-BR-8081-01 X 99854133 99854133 G A TNMD Missense_Mutation p.R233H 0.15 deleterious(0) probably_damaging(0.994) TCGA-BR-8284-01 10 1058577 1058577 C A GTPBP4 Missense_Mutation p.P506H 0.07 deleterious(0) probably_damaging(0.977) TCGA-BR-8284-01 10 128149986 128149986 C G C10orf90 Missense_Mutation p.R568T 0.24 tolerated(0.14) benign(0.004) TCGA-BR-8284-01 10 28023608 28023608 C A MKX Missense_Mutation p.E205D 0.11 tolerated(0.55) benign(0.151) TCGA-BR-8284-01 10 32576130 32576130 C T EPC1 Missense_Mutation p.A350T 0.11 tolerated(0.61) benign(0.003) TCGA-BR-8284-01 10 63851485 63851485 G A ARID5B Missense_Mutation p.V755I 0.07 deleterious(0.03) possibly_damaging(0.897) TCGA-BR-8284-01 10 89717672 89717672 C T PTEN Nonsense_Mutation p.R233* 0.16 TCGA-BR-8284-01 10 89717770 89717770 A - PTEN Frame_Shift_Del p.K267Rfs*9 0.10 TCGA-BR-8284-01 10 98079101 98079101 C T DNTT Missense_Mutation p.A154V 0.06 deleterious(0) probably_damaging(0.954) TCGA-BR-8284-01 10 99196230 99196230 C T EXOSC1 Missense_Mutation p.R187Q 0.07 deleterious(0.01) benign(0.206) TCGA-BR-8284-01 11 103866942 103866942 C A PDGFD Nonsense_Mutation p.E121* 0.17 TCGA-BR-8284-01 11 103908214 103908214 A T DDI1 Missense_Mutation p.N222Y 0.07 deleterious(0) probably_damaging(0.997) TCGA-BR-8284-01 11 10526171 10526171 A G AMPD3 Missense_Mutation p.R707G 0.07 deleterious(0) probably_damaging(0.987) TCGA-BR-8284-01 11 113268051 113268051 G A ANKK1 Missense_Mutation p.R315H 0.10 tolerated(0.19) benign(0.001) TCGA-BR-8284-01 11 114401135 114401135 C A NXPE1 Missense_Mutation p.G57C 0.05 deleterious(0.03) possibly_damaging(0.808) TCGA-BR-8284-01 11 117161234 117161234 G A BACE1 Nonsense_Mutation p.R412* 0.11 TCGA-BR-8284-01 11 117710884 117710884 C A FXYD6 Intron 0.29 TCGA-BR-8284-01 11 117860290 117860290 C A IL10RA Missense_Mutation p.H108N 0.21 tolerated(0.24) benign(0.137) TCGA-BR-8284-01 11 124747173 124747173 G A ROBO3 Silent p.P938P 0.11 TCGA-BR-8284-01 11 16007846 16007846 C T SOX6 Missense_Mutation p.R676H 0.08 deleterious(0) probably_damaging(0.999) TCGA-BR-8284-01 11 18579822 18579822 G A UEVLD Missense_Mutation p.T223M 0.09 tolerated(0.83) benign(0.226) TCGA-BR-8284-01 11 18636447 18636447 G T SPTY2D1 Silent p.P458P 0.10 TCGA-BR-8284-01 11 20398124 20398124 A G HTATIP2 Splice_Site p.X136_splice 0.11 TCGA-BR-8284-01 11 2356952 2356952 C A CD81-AS1 Intron 0.15 TCGA-BR-8284-01 11 2432908 2432908 A T TRPM5 Missense_Mutation p.I855K 0.19 deleterious(0) probably_damaging(0.918) TCGA-BR-8284-01 11 30033696 30033696 C A KCNA4 Missense_Mutation p.R177L 0.24 deleterious(0.01) probably_damaging(0.94) TCGA-BR-8284-01 11 44129759 44129759 G A EXT2 Missense_Mutation p.R199H 0.13 tolerated(0.08) benign(0.031) TCGA-BR-8284-01 11 45672345 45672345 G A CHST1 Silent p.A43A 0.24 TCGA-BR-8284-01 11 4674130 4674130 G A OR51E1 Missense_Mutation p.R125H 0.12 deleterious(0.01) probably_damaging(1) TCGA-BR-8284-01 11 49208318 49208318 C T FOLH1 Missense_Mutation p.D173N 0.09 deleterious(0.04) benign(0.099) TCGA-BR-8284-01 11 56237824 56237824 A G OR5M3 Silent p.S50S 0.05 TCGA-BR-8284-01 11 57577664 57577664 A - CTNND1 Frame_Shift_Del p.E842Kfs*10 0.16 TCGA-BR-8284-01 11 6008025 6008025 C A OR52L1 Missense_Mutation p.A46S 0.29 tolerated(1) benign(0.016) TCGA-BR-8284-01 11 60704808 60704810 GAA - SLC15A3 In_Frame_Del p.F543del 0.12 TCGA-BR-8284-01 11 619478 619478 G A CDHR5 Missense_Mutation p.A430V 0.08 tolerated(0.25) probably_damaging(0.971) TCGA-BR-8284-01 11 64572229 64572229 C T MEN1 Silent p.P475P 0.12 TCGA-BR-8284-01 11 66291009 66291009 G T BBS1 Missense_Mutation p.G305C 0.09 deleterious(0) probably_damaging(0.991) TCGA-BR-8284-01 11 764847 764847 G A TALDO1 3'UTR 0.10 TCGA-BR-8284-01 11 76900480 76900480 G A MYO7A Missense_Mutation p.V1199M 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8284-01 11 77775382 77775382 G T THRSP 3'UTR 0.21 TCGA-BR-8284-01 11 9082038 9082038 C T SCUBE2 Missense_Mutation p.R295H 0.11 tolerated(0.13) probably_damaging(0.999) TCGA-BR-8284-01 12 101720872 101720872 C T UTP20 Nonsense_Mutation p.R1019* 0.12 TCGA-BR-8284-01 12 10223902 10223902 A G CLEC1A 3'UTR 0.09 TCGA-BR-8284-01 12 119954458 119954458 A G CCDC60 Missense_Mutation p.E305G 0.11 deleterious(0.03) probably_damaging(0.999) TCGA-BR-8284-01 12 124209219 124209219 G A ATP6V0A2 Missense_Mutation p.E105K 0.09 deleterious(0) probably_damaging(0.911) TCGA-BR-8284-01 12 133196038 133196038 G A P2RX2 Missense_Mutation p.V63M 0.15 tolerated(0.09) probably_damaging(0.939) TCGA-BR-8284-01 12 133237570 133237570 G A POLE Silent p.D1015D 0.10 TCGA-BR-8284-01 12 32755181 32755181 A G FGD4 Missense_Mutation p.N308S 0.09 deleterious(0.02) benign(0.068) TCGA-BR-8284-01 12 33529822 33529822 C T SYT10 Silent p.A505A 0.13 TCGA-BR-8284-01 12 38714359 38714359 C T ALG10B Missense_Mutation p.P256S 0.04 deleterious(0.01) probably_damaging(0.995) TCGA-BR-8284-01 12 52681893 52681893 C T KRT81 Missense_Mutation p.V259M 0.27 deleterious(0.01) probably_damaging(0.977) TCGA-BR-8284-01 12 52776281 52776281 G A KRT84 Silent p.L284L 0.06 TCGA-BR-8284-01 12 66641720 66641720 C T IRAK3 Silent p.D520D 0.15 TCGA-BR-8284-01 12 7177276 7177276 C T C1S Missense_Mutation p.A463V 0.07 tolerated(0.25) benign(0.127) TCGA-BR-8284-01 12 8374624 8374624 G A FAM90A1 Missense_Mutation p.R397W 0.13 deleterious(0.02) probably_damaging(0.976) TCGA-BR-8284-01 12 94976111 94976111 C T TMCC3 Silent p.A94A 0.11 TCGA-BR-8284-01 13 101712255 101712255 C T NALCN Missense_Mutation p.R1607Q 0.13 tolerated(0.39) benign(0.001) TCGA-BR-8284-01 13 103528319 103528319 G A ERCC5 3'UTR 0.29 TCGA-BR-8284-01 13 111082904 111082904 C T COL4A2 Missense_Mutation p.R200C 0.11 probably_damaging(0.985) TCGA-BR-8284-01 13 25670305 25670305 G A PABPC3 5'UTR 0.08 TCGA-BR-8284-01 13 36686031 36686031 C T DCLK1 Missense_Mutation p.R233H 0.23 deleterious(0) unknown(0) TCGA-BR-8284-01 13 67801710 67801710 C T PCDH9 Missense_Mutation p.R288Q 0.10 tolerated(0.2) benign(0.004) TCGA-BR-8284-01 13 88329874 88329874 C T SLITRK5 Missense_Mutation p.P744L 0.06 deleterious(0.03) benign(0.165) TCGA-BR-8284-01 14 20389116 20389116 G A OR4K5 Silent p.S117S 0.05 TCGA-BR-8284-01 14 20711877 20711877 C T OR11H4 Silent p.L309L 0.26 TCGA-BR-8284-01 14 21052027 21052027 G A RNASE11 3'UTR 0.09 TCGA-BR-8284-01 14 21549161 21549161 C T ARHGEF40 Missense_Mutation p.R876C 0.18 deleterious(0) probably_damaging(0.994) TCGA-BR-8284-01 14 21793997 21793997 C T RPGRIP1 Missense_Mutation p.S792L 0.09 tolerated(0.13) benign(0.015) TCGA-BR-8284-01 14 23817839 23817839 G T SLC22A17 Missense_Mutation p.L190M 0.10 tolerated(1) possibly_damaging(0.752) TCGA-BR-8284-01 14 24836397 24836397 G T NFATC4 Missense_Mutation p.G46V 0.12 deleterious_low_confidence(0.01) benign(0) TCGA-BR-8284-01 14 32561828 32561828 C T ARHGAP5 Silent p.A651A 0.13 TCGA-BR-8284-01 14 35037121 35037121 G A SNX6 Silent p.A352A 0.10 TCGA-BR-8284-01 14 58831119 58831119 T - ARID4A Frame_Shift_Del p.F772Lfs*33 0.09 TCGA-BR-8284-01 14 68151905 68151905 C T RDH11 Silent p.T227T 0.12 TCGA-BR-8284-01 15 101606846 101606846 C T LRRK1 Missense_Mutation p.R1924C 0.03 deleterious(0) possibly_damaging(0.726) TCGA-BR-8284-01 15 22473170 22473170 G C IGHV4OR15-8 Missense_Mutation p.S34W 0.07 deleterious(0) probably_damaging(0.985) TCGA-BR-8284-01 15 28441687 28441687 A G HERC2 Silent p.I2680I 0.06 TCGA-BR-8284-01 15 31197648 31197648 C T FAN1 Missense_Mutation p.A261V 0.10 tolerated(0.22) possibly_damaging(0.755) TCGA-BR-8284-01 15 42145505 42145505 C T SPTBN5 Missense_Mutation p.R3374Q 0.14 benign(0.003) TCGA-BR-8284-01 15 45491037 45491039 TTC - SHF In_Frame_Del p.K79del 0.11 TCGA-BR-8284-01 15 55724733 55724733 C T DYX1C1 Missense_Mutation p.R372H 0.07 deleterious(0.02) possibly_damaging(0.638) TCGA-BR-8284-01 15 64686305 64686305 A - TRIP4 Frame_Shift_Del p.D90Mfs*4 0.11 TCGA-BR-8284-01 15 68649512 68649512 C T ITGA11 Silent p.T242T 0.12 TCGA-BR-8284-01 15 74425596 74425596 C T ISLR2 Silent p.F167F 0.07 TCGA-BR-8284-01 15 74918310 74918311 - T CLK3 Splice_Site p.X421_splice 0.25 TCGA-BR-8284-01 15 81592262 81592262 G A IL16 Silent p.Q865Q 0.08 TCGA-BR-8284-01 15 81605558 81605558 T G STARD5 3'UTR 0.34 TCGA-BR-8284-01 15 84651760 84651760 A G ADAMTSL3 Missense_Mutation p.E1127G 0.05 deleterious(0.01) possibly_damaging(0.792) TCGA-BR-8284-01 15 98514381 98514381 C T ARRDC4 Silent p.D407D 0.21 TCGA-BR-8284-01 15 99500617 99500617 C T IGF1R Silent p.N1350N 0.09 TCGA-BR-8284-01 16 11260312 11260312 C T CLEC16A Silent p.S903S 0.14 TCGA-BR-8284-01 16 16101752 16101753 - T ABCC1 Frame_Shift_Ins p.Y45Lfs*17 0.10 TCGA-BR-8284-01 16 20855996 20855996 G A AC004381.6 Missense_Mutation p.V589M 0.07 tolerated(0.08) benign(0.133) TCGA-BR-8284-01 16 21042477 21042477 G A DNAH3 Missense_Mutation p.R1777W 0.13 deleterious(0) probably_damaging(1) TCGA-BR-8284-01 16 22319478 22319478 C T POLR3E Missense_Mutation p.R33C 0.12 deleterious(0) possibly_damaging(0.804) TCGA-BR-8284-01 16 24579195 24579195 C T RBBP6 Missense_Mutation p.R679C 0.09 deleterious_low_confidence(0) unknown(0) TCGA-BR-8284-01 16 30750774 30750774 G A SRCAP Missense_Mutation p.R3138H 0.09 unknown(0) TCGA-BR-8284-01 16 31234251 31234251 C T TRIM72 Missense_Mutation p.R282W 0.26 deleterious(0) probably_damaging(0.998) TCGA-BR-8284-01 16 3168941 3168941 G A ZNF205 Missense_Mutation p.A174T 0.08 deleterious(0.03) benign(0.05) TCGA-BR-8284-01 16 4312613 4312613 C T TFAP4 Missense_Mutation p.R60H 0.10 deleterious(0) probably_damaging(1) TCGA-BR-8284-01 16 55903586 55903586 G T CES5A Missense_Mutation p.A192D 0.23 deleterious(0) probably_damaging(0.988) TCGA-BR-8284-01 16 67290943 67290943 G T SLC9A5 Missense_Mutation p.R421M 0.11 deleterious(0.02) possibly_damaging(0.744) TCGA-BR-8284-01 16 67964638 67964638 G A CTRL Silent p.S103S 0.22 TCGA-BR-8284-01 16 67978929 67978929 C T SLC12A4 Intron 0.08 TCGA-BR-8284-01 16 68055675 68055675 C T DDX28 Silent p.T477T 0.09 TCGA-BR-8284-01 16 75563965 75563965 G A CHST5 Silent p.S106S 0.12 TCGA-BR-8284-01 16 8722947 8722947 C T METTL22 Missense_Mutation p.P165L 0.07 tolerated(0.65) benign(0.009) TCGA-BR-8284-01 16 87870208 87870208 C T SLC7A5 Missense_Mutation p.V396I 0.11 deleterious(0.03) benign(0.05) TCGA-BR-8284-01 16 89986277 89986277 C T MC1R Missense_Mutation p.A204V 0.15 tolerated(0.26) benign(0.116) TCGA-BR-8284-01 16 9857287 9857287 T G GRIN2A Silent p.R1372R 0.16 TCGA-BR-8284-01 17 10354172 10354172 A G MYH4 Silent p.V1302V 0.07 TCGA-BR-8284-01 17 11806090 11806090 G T DNAH9 Missense_Mutation p.A3821S 0.22 benign(0.126) TCGA-BR-8284-01 17 27211272 27211272 C - FLOT2 Frame_Shift_Del p.V65* 0.16 TCGA-BR-8284-01 17 27959108 27959108 C T SSH2 Missense_Mutation p.R1008K 0.29 tolerated_low_confidence(0.28) benign(0.007) TCGA-BR-8284-01 17 33772152 33772152 A G SLFN13 Missense_Mutation p.I183T 0.03 tolerated(0.42) benign(0.002) TCGA-BR-8284-01 17 37235398 37235398 G A PLXDC1 Missense_Mutation p.R337C 0.10 deleterious(0) probably_damaging(0.985) TCGA-BR-8284-01 17 38318390 38318390 C T CASC3 Nonsense_Mutation p.Q198* 0.25 TCGA-BR-8284-01 17 38319064 38319064 C T CASC3 Missense_Mutation p.S232F 0.20 deleterious(0) probably_damaging(0.981) TCGA-BR-8284-01 17 38319117 38319117 C T CASC3 Missense_Mutation p.P250S 0.20 tolerated(0.12) benign(0.178) TCGA-BR-8284-01 17 38323834 38323834 C T CASC3 Silent p.I540I 0.12 TCGA-BR-8284-01 17 38323862 38323862 C T CASC3 Missense_Mutation p.P550S 0.15 tolerated(0.05) benign(0.077) TCGA-BR-8284-01 17 38324513 38324513 C T CASC3 Missense_Mutation p.P603L 0.13 deleterious(0) probably_damaging(0.999) TCGA-BR-8284-01 17 38324586 38324586 C T CASC3 Silent p.V627V 0.12 TCGA-BR-8284-01 17 38324639 38324639 C T CASC3 Missense_Mutation p.P645L 0.07 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-BR-8284-01 17 38325584 38325584 C T CASC3 Missense_Mutation p.S658L 0.15 deleterious(0) benign(0.37) TCGA-BR-8284-01 17 38325681 38325681 C T CASC3 Silent p.I690I 0.16 TCGA-BR-8284-01 17 38458232 38458232 C G CDC6 Missense_Mutation p.I554M 0.10 deleterious(0) probably_damaging(0.98) TCGA-BR-8284-01 17 39567653 39567653 G A AC003958.2 RNA 0.10 TCGA-BR-8284-01 17 39593663 39593663 T C KRT38 3'UTR 0.29 TCGA-BR-8284-01 17 39888482 39888482 C T HAP1 Silent p.E238E 0.19 TCGA-BR-8284-01 17 39890671 39890671 C T HAP1 Silent p.S72S 0.29 TCGA-BR-8284-01 17 40842152 40842152 T G CNTNAP1 Silent p.T594T 0.05 TCGA-BR-8284-01 17 46669802 46669802 G A HOXB5 Silent p.D193D 0.16 TCGA-BR-8284-01 17 46799756 46799756 G A PRAC1 5'UTR 0.08 TCGA-BR-8284-01 17 48434433 48434434 - T XYLT2 Frame_Shift_Ins p.L588Ffs*11 0.19 TCGA-BR-8284-01 17 48701418 48701418 C A CACNA1G Missense_Mutation p.L2071I 0.15 tolerated(0.24) benign(0.045) TCGA-BR-8284-01 17 5048857 5048857 T C USP6 Missense_Mutation p.M717T 0.10 tolerated_low_confidence(0.4) probably_damaging(0.989) TCGA-BR-8284-01 17 51901324 51901324 G A KIF2B Silent p.T310T 0.19 TCGA-BR-8284-01 17 54923170 54923170 G T DGKE Missense_Mutation p.Q248H 0.10 deleterious(0) probably_damaging(0.999) TCGA-BR-8284-01 17 56272519 56272519 C A EPX Nonsense_Mutation p.C263* 0.24 TCGA-BR-8284-01 17 73871176 73871176 G A TRIM47 Silent p.D435D 0.10 TCGA-BR-8284-01 17 74878309 74878309 C T MGAT5B Silent p.D97D 0.28 TCGA-BR-8284-01 17 76490732 76490732 G A DNAH17 Silent p.I2057I 0.14 TCGA-BR-8284-01 17 76496429 76496429 G A DNAH17-AS1 Missense_Mutation p.G121S 0.15 unknown(0) TCGA-BR-8284-01 17 78360611 78360611 G A RNF213 Missense_Mutation p.V4948M 0.13 benign(0.047) TCGA-BR-8284-01 17 78857671 78857671 C T RPTOR Missense_Mutation p.L581F 0.20 deleterious(0) probably_damaging(0.974) TCGA-BR-8284-01 17 80044363 80044363 C A FASN Missense_Mutation p.A1167S 0.22 tolerated(0.51) benign(0.104) TCGA-BR-8284-01 17 80159471 80159471 T A CCDC57 Missense_Mutation p.Q117L 0.10 deleterious(0.02) benign(0.14) TCGA-BR-8284-01 17 80887103 80887103 C - TBCD Frame_Shift_Del p.H938Tfs*20 0.16 TCGA-BR-8284-01 18 13825764 13825764 A G MC5R 5'UTR 0.06 TCGA-BR-8284-01 18 21214092 21214092 C T ANKRD29 Missense_Mutation p.A118T 0.07 deleterious(0.04) benign(0.286) TCGA-BR-8284-01 18 21407422 21407422 C T LAMA3 Silent p.S938S 0.07 TCGA-BR-8284-01 18 22806394 22806394 G T ZNF521 Silent p.I496I 0.10 TCGA-BR-8284-01 18 43459143 43459143 A - EPG5 Frame_Shift_Del p.Y1902Ifs*26 0.12 TCGA-BR-8284-01 18 51013255 51013255 G A DCC Silent p.P1275P 0.07 TCGA-BR-8284-01 18 61223522 61223522 T C SERPINB12 Silent p.L44L 0.07 TCGA-BR-8284-01 18 65179723 65179723 A G DSEL Missense_Mutation p.V718A 0.37 tolerated(0.12) benign(0.132) TCGA-BR-8284-01 18 72180886 72180886 G T CNDP2 Missense_Mutation p.D279Y 0.05 deleterious(0.02) benign(0.023) TCGA-BR-8284-01 18 74620354 74620354 G A ZNF236 Missense_Mutation p.M790I 0.05 tolerated(0.72) benign(0) TCGA-BR-8284-01 18 74692266 74692266 G A RP11-862L9.3 5'Flank 0.16 TCGA-BR-8284-01 19 10112500 10112501 - G COL5A3 Frame_Shift_Ins p.T303Hfs*25 0.11 TCGA-BR-8284-01 19 10625085 10625085 G A S1PR5 Silent p.F201F 0.22 TCGA-BR-8284-01 19 1093981 1093981 G A POLR2E Missense_Mutation p.R52W 0.12 deleterious(0.01) possibly_damaging(0.512) TCGA-BR-8284-01 19 11915446 11915446 G C ZNF491 5'UTR 0.23 TCGA-BR-8284-01 19 15281167 15281167 C T NOTCH3 Missense_Mutation p.V1697M 0.16 deleterious(0.01) possibly_damaging(0.724) TCGA-BR-8284-01 19 17983472 17983472 C T SLC5A5 Missense_Mutation p.T115I 0.11 deleterious(0) probably_damaging(0.996) TCGA-BR-8284-01 19 19609527 19609527 A G GATAD2A Silent p.T400T 0.07 TCGA-BR-8284-01 19 19625866 19625866 C T TSSK6 Missense_Mutation p.R124H 0.06 tolerated(0.35) benign(0.003) TCGA-BR-8284-01 19 30165559 30165559 G C PLEKHF1 Silent p.G271G 0.31 TCGA-BR-8284-01 19 3207402 3207402 G A NCLN Missense_Mutation p.V523I 0.04 tolerated(1) benign(0.004) TCGA-BR-8284-01 19 38572746 38572746 G A SIPA1L3 Missense_Mutation p.A181T 0.12 tolerated(0.31) benign(0.029) TCGA-BR-8284-01 19 42566769 42566769 G A GRIK5 Missense_Mutation p.R127C 0.09 deleterious(0) possibly_damaging(0.878) TCGA-BR-8284-01 19 44237020 44237020 C T SMG9 Missense_Mutation p.E492K 0.08 deleterious(0) possibly_damaging(0.694) TCGA-BR-8284-01 19 49863201 49863201 C T TEAD2 Silent p.V44V 0.12 TCGA-BR-8284-01 19 51022587 51022587 C T LRRC4B Missense_Mutation p.G128D 0.19 deleterious(0.05) probably_damaging(0.994) TCGA-BR-8284-01 19 52469108 52469108 G A ZNF350 Nonsense_Mutation p.R200* 0.12 TCGA-BR-8284-01 19 54611352 54611352 G A TFPT Missense_Mutation p.P208L 0.08 deleterious(0.04) benign(0.011) TCGA-BR-8284-01 19 57647341 57647341 C T ZIM3 Missense_Mutation p.G122R 0.11 tolerated(0.53) benign(0.019) TCGA-BR-8284-01 19 58967763 58967763 G A ZNF324B Silent p.T484T 0.12 TCGA-BR-8284-01 19 6707183 6707183 C T C3 Missense_Mutation p.G717S 0.15 tolerated(0.17) benign(0.187) TCGA-BR-8284-01 19 8620596 8620596 C T MYO1F Missense_Mutation p.E30K 0.18 deleterious(0) probably_damaging(0.991) TCGA-BR-8284-01 1 13669309 13669309 C T PRAMEF14 Missense_Mutation p.G341R 0.35 tolerated(0.27) benign(0.018) TCGA-BR-8284-01 1 14107267 14107267 G A PRDM2 Missense_Mutation p.V993I 0.09 unknown(0) TCGA-BR-8284-01 1 149785231 149785231 G C HIST2H3D Silent p.A2A 0.14 TCGA-BR-8284-01 1 151378718 151378718 C T POGZ Silent p.P931P 0.15 TCGA-BR-8284-01 1 153745683 153745683 G A INTS3 Silent p.T1022T 0.11 TCGA-BR-8284-01 1 155264957 155264957 C - PKLR Frame_Shift_Del p.G215Afs*12 0.18 TCGA-BR-8284-01 1 156132886 156132886 G A SEMA4A Splice_Site p.X378_splice 0.12 TCGA-BR-8284-01 1 156255196 156255196 A G TMEM79 Missense_Mutation p.E60G 0.21 tolerated(0.08) benign(0.202) TCGA-BR-8284-01 1 157740399 157740399 T G FCRL2 Missense_Mutation p.K37T 0.13 tolerated(0.15) benign(0.014) TCGA-BR-8284-01 1 159779472 159779472 G T FCRL6 Missense_Mutation p.K295N 0.07 tolerated(0.18) benign(0.001) TCGA-BR-8284-01 1 169696647 169696647 C A SELE Silent p.L496L 0.10 TCGA-BR-8284-01 1 181727101 181727101 G A CACNA1E Missense_Mutation p.A1450T 0.05 tolerated(0.05) possibly_damaging(0.499) TCGA-BR-8284-01 1 186281523 186281524 - A TPR 3'UTR 0.11 TCGA-BR-8284-01 1 19062320 19062320 C T PAX7 Silent p.T450T 0.05 TCGA-BR-8284-01 1 203455927 203455927 G A PRELP Missense_Mutation p.R356Q 0.08 deleterious(0) probably_damaging(0.999) TCGA-BR-8284-01 1 205389583 205389583 G A LEMD1 Missense_Mutation p.P28S 0.05 tolerated(0.06) possibly_damaging(0.883) TCGA-BR-8284-01 1 23191577 23191577 G A EPHB2 Missense_Mutation p.R392H 0.13 tolerated(0.11) benign(0.031) TCGA-BR-8284-01 1 23233321 23233321 C T EPHB2 Silent p.S670S 0.12 TCGA-BR-8284-01 1 245704126 245704126 T G KIF26B Silent p.S408S 0.08 TCGA-BR-8284-01 1 248059005 248059005 C T OR2W3 Silent p.L39L 0.24 TCGA-BR-8284-01 1 248263219 248263219 C A OR2L13 Missense_Mutation p.P181Q 0.18 deleterious(0) probably_damaging(0.991) TCGA-BR-8284-01 1 25617155 25617155 C A RHD Missense_Mutation p.A120D 0.13 deleterious(0.01) probably_damaging(0.965) TCGA-BR-8284-01 1 27105513 27105513 G A ARID1A Splice_Site p.X1709_splice 0.48 TCGA-BR-8284-01 1 27685227 27685227 G A MAP3K6 Silent p.L852L 0.13 TCGA-BR-8284-01 1 29630479 29630479 G A PTPRU Silent p.A873A 0.23 TCGA-BR-8284-01 1 33244985 33244985 G A YARS Nonsense_Mutation p.Q492* 0.06 TCGA-BR-8284-01 1 33741707 33741707 C T ZNF362 Silent p.A15A 0.10 TCGA-BR-8284-01 1 3775293 3775293 C T DFFB Silent p.R42R 0.12 TCGA-BR-8284-01 1 39851472 39851472 G A MACF1 Missense_Mutation p.E2677K 0.06 probably_damaging(0.921) TCGA-BR-8284-01 1 41978959 41978959 C T HIVEP3 Missense_Mutation p.R1978H 0.05 benign(0.002) TCGA-BR-8284-01 1 42628489 42628489 C T GUCA2A 3'UTR 0.15 TCGA-BR-8284-01 1 45292608 45292608 G A PTCH2 Silent p.H887H 0.05 TCGA-BR-8284-01 1 60359276 60359276 C T CYP2J2 3'UTR 0.06 TCGA-BR-8284-01 1 6189120 6189120 G A CHD5 Missense_Mutation p.R1133C 0.17 deleterious(0) probably_damaging(0.999) TCGA-BR-8284-01 1 67292679 67292680 - A WDR78 Frame_Shift_Ins p.L721Ffs*48 0.11 TCGA-BR-8284-01 1 74957799 74957799 A C TNNI3K Missense_Mutation p.S835R 0.23 tolerated_low_confidence(0.09) possibly_damaging(0.462) TCGA-BR-8284-01 1 90178606 90178606 C A LRRC8C Silent p.I159I 0.15 TCGA-BR-8284-01 1 90400677 90400677 C T LRRC8D Nonsense_Mutation p.R684* 0.06 TCGA-BR-8284-01 1 92177810 92177810 T C TGFBR3 Missense_Mutation p.K719R 0.22 tolerated(0.43) benign(0.002) TCGA-BR-8284-01 1 92846337 92846337 G A RPAP2 Missense_Mutation p.R582Q 0.05 tolerated(1) benign(0.001) TCGA-BR-8284-01 20 17928170 17928170 G A SNX5 Silent p.C346C 0.06 TCGA-BR-8284-01 20 24524112 24524112 G A SYNDIG1 Missense_Mutation p.E127K 0.10 tolerated(0.15) benign(0.033) TCGA-BR-8284-01 20 30585189 30585189 G T XKR7 Missense_Mutation p.A557S 0.17 tolerated(0.57) benign(0.027) TCGA-BR-8284-01 20 32344953 32344953 G T ZNF341 Splice_Site p.X248_splice 0.07 TCGA-BR-8284-01 20 33509633 33509633 C T ACSS2 Silent p.S517S 0.11 TCGA-BR-8284-01 20 33842535 33842535 G A MMP24 Silent p.T265T 0.09 TCGA-BR-8284-01 20 34214684 34214684 C T CPNE1 Silent p.T431T 0.17 TCGA-BR-8284-01 20 39831076 39831076 G A ZHX3 Silent p.Y827Y 0.05 TCGA-BR-8284-01 20 42973989 42973989 G A R3HDML Silent p.A200A 0.07 TCGA-BR-8284-01 20 4880333 4880333 G A SLC23A2 Missense_Mutation p.T117M 0.10 tolerated(0.1) probably_damaging(0.993) TCGA-BR-8284-01 20 62197020 62197020 G A HELZ2 Missense_Mutation p.T1052M 0.07 tolerated(0.09) possibly_damaging(0.655) TCGA-BR-8284-01 20 62221390 62221390 G A GMEB2 3'UTR 0.17 TCGA-BR-8284-01 20 62571599 62571599 C T UCKL1 Missense_Mutation p.V491M 0.25 deleterious(0) probably_damaging(0.962) TCGA-BR-8284-01 21 46191262 46191262 G A UBE2G2 3'UTR 0.12 TCGA-BR-8284-01 22 18028575 18028575 A G CECR2 Missense_Mutation p.T1179A 0.10 tolerated(0.14) probably_damaging(0.997) TCGA-BR-8284-01 22 20077195 20077195 G A DGCR8 Missense_Mutation p.R295H 0.09 deleterious(0.03) possibly_damaging(0.628) TCGA-BR-8284-01 22 21075694 21075694 G A PI4KA Missense_Mutation p.R1670W 0.17 deleterious(0.02) probably_damaging(0.983) TCGA-BR-8284-01 22 29745311 29745311 G A AP1B1 Missense_Mutation p.R445W 0.07 deleterious(0) probably_damaging(1) TCGA-BR-8284-01 22 31741321 31741321 C A PATZ1 Missense_Mutation p.A90S 0.08 deleterious_low_confidence(0.01) benign(0.111) TCGA-BR-8284-01 22 38935386 38935386 G A DMC1 Missense_Mutation p.R176C 0.09 deleterious(0) probably_damaging(0.958) TCGA-BR-8284-01 22 39884327 39884327 C T MGAT3 Silent p.D325D 0.07 TCGA-BR-8284-01 22 41075595 41075595 A G MCHR1 Missense_Mutation p.Q49R 0.07 deleterious_low_confidence(0.02) benign(0.007) TCGA-BR-8284-01 22 44022428 44022428 A G EFCAB6 Silent p.L788L 0.25 TCGA-BR-8284-01 22 46931227 46931227 C - CELSR1 Frame_Shift_Del p.G614Afs*54 0.14 TCGA-BR-8284-01 2 105859168 105859168 G A GPR45 Missense_Mutation p.V285I 0.25 tolerated(0.46) benign(0.009) TCGA-BR-8284-01 2 106690499 106690499 G A C2orf40 Silent p.A95A 0.09 TCGA-BR-8284-01 2 112944983 112944983 C T FBLN7 Missense_Mutation p.T407M 0.06 deleterious(0) possibly_damaging(0.84) TCGA-BR-8284-01 2 137990641 137990641 A G THSD7B Silent p.V696V 0.14 TCGA-BR-8284-01 2 148683686 148683686 A - ACVR2A Frame_Shift_Del p.K437Rfs*5 0.37 TCGA-BR-8284-01 2 152992113 152992113 C T STAM2 Missense_Mutation p.A237T 0.05 tolerated(0.1) benign(0.262) TCGA-BR-8284-01 2 179408275 179408275 A G TTN Missense_Mutation p.V32142A 0.11 TCGA-BR-8284-01 2 179417845 179417845 C T TTN Missense_Mutation p.V29928I 0.06 TCGA-BR-8284-01 2 183593668 183593668 C T DNAJC10 Nonsense_Mutation p.R194* 0.05 TCGA-BR-8284-01 2 186678578 186678578 T A FSIP2 Missense_Mutation p.F6801I 0.11 benign(0.135) TCGA-BR-8284-01 2 191524441 191524441 C - NAB1 Frame_Shift_Del p.A182Rfs*34 0.11 TCGA-BR-8284-01 2 200790353 200790353 G A C2orf69 Missense_Mutation p.G301D 0.07 deleterious(0) probably_damaging(0.999) TCGA-BR-8284-01 2 207820188 207820188 T A CPO Missense_Mutation p.I56N 0.10 deleterious(0) probably_damaging(0.977) TCGA-BR-8284-01 2 217279405 217279405 T C SMARCAL1 5'UTR 0.08 TCGA-BR-8284-01 2 227662669 227662669 A G IRS1 Silent p.D262D 0.11 TCGA-BR-8284-01 2 233396134 233396134 G A CHRND Missense_Mutation p.R298H 0.19 deleterious(0) probably_damaging(0.993) TCGA-BR-8284-01 2 242375921 242375921 G A FARP2 Missense_Mutation p.V376I 0.08 tolerated(0.73) benign(0.001) TCGA-BR-8284-01 2 42670996 42670996 C T KCNG3 3'UTR 0.17 TCGA-BR-8284-01 2 46985797 46985797 A G SOCS5 Missense_Mutation p.K43R 0.15 tolerated_low_confidence(0.23) benign(0.001) TCGA-BR-8284-01 2 58366924 58366924 C T VRK2 Missense_Mutation p.T327I 0.13 deleterious(0.04) benign(0.003) TCGA-BR-8284-01 2 71415605 71415605 C T PAIP2B 3'UTR 0.17 TCGA-BR-8284-01 2 74598237 74598237 G A DCTN1 Missense_Mutation p.R238W 0.07 deleterious(0) probably_damaging(1) TCGA-BR-8284-01 2 89265879 89265879 T C IGKV1-6 Missense_Mutation p.S85G 0.09 deleterious(0.01) possibly_damaging(0.613) TCGA-BR-8284-01 3 100093959 100093959 T A TOMM70A Missense_Mutation p.Y377F 0.07 tolerated(0.6) benign(0.082) TCGA-BR-8284-01 3 105264131 105264131 G A ALCAM Silent p.V352V 0.12 TCGA-BR-8284-01 3 121207489 121207489 A - POLQ Frame_Shift_Del p.L1430* 0.16 TCGA-BR-8284-01 3 122632748 122632748 G A SEMA5B Missense_Mutation p.R751C 0.09 deleterious(0) probably_damaging(0.979) TCGA-BR-8284-01 3 124103819 124103819 G A KALRN Missense_Mutation p.R631H 0.09 deleterious(0.04) unknown(0) TCGA-BR-8284-01 3 126229550 126229550 C T UROC1 Missense_Mutation p.G72R 0.10 deleterious(0) probably_damaging(0.998) TCGA-BR-8284-01 3 131442406 131442406 C T CPNE4 Missense_Mutation p.D82N 0.08 deleterious(0.03) benign(0.329) TCGA-BR-8284-01 3 147128729 147128729 C T ZIC1 Missense_Mutation p.P277L 0.06 deleterious(0.01) benign(0.027) TCGA-BR-8284-01 3 165547539 165547539 C A BCHE Missense_Mutation p.C428F 0.19 deleterious(0) probably_damaging(1) TCGA-BR-8284-01 3 167183292 167183292 C A SERPINI2 Missense_Mutation p.M216I 0.18 deleterious(0.01) probably_damaging(0.91) TCGA-BR-8284-01 3 184573526 184573526 G A VPS8 Missense_Mutation p.A355T 0.11 deleterious(0.01) probably_damaging(0.948) TCGA-BR-8284-01 3 196098766 196098766 C T UBXN7 Splice_Site p.X205_splice 0.10 TCGA-BR-8284-01 3 2967352 2967352 T C CNTN4 Missense_Mutation p.V416A 0.10 tolerated(0.23) benign(0.145) TCGA-BR-8284-01 3 33195442 33195442 G A SUSD5 Missense_Mutation p.R228W 0.11 tolerated(0.07) benign(0.025) TCGA-BR-8284-01 3 40574034 40574034 C T ZNF621 Missense_Mutation p.T258M 0.18 deleterious(0) probably_damaging(0.998) TCGA-BR-8284-01 3 49227333 49227333 A C C3orf84 Intron 0.12 TCGA-BR-8284-01 3 50107922 50107922 A - RBM6 Frame_Shift_Del p.K1019Sfs*69 0.08 TCGA-BR-8284-01 3 52556204 52556204 C T STAB1 Silent p.R2141R 0.16 TCGA-BR-8284-01 3 52610695 52610695 G A PBRM1 Nonsense_Mutation p.R1160* 0.24 TCGA-BR-8284-01 3 56763272 56763272 T C ARHGEF3 3'UTR 0.08 TCGA-BR-8284-01 3 57233925 57233925 C A HESX1 Missense_Mutation p.G8C 0.05 tolerated(0.07) possibly_damaging(0.503) TCGA-BR-8284-01 3 58260420 58260420 C T ABHD6 Missense_Mutation p.R187W 0.10 tolerated(0.23) possibly_damaging(0.606) TCGA-BR-8284-01 3 93619668 93619668 A G PROS1 Missense_Mutation p.L236P 0.06 tolerated(0.26) benign(0.004) TCGA-BR-8284-01 4 101109029 101109029 G A DDIT4L Silent p.S129S 0.10 TCGA-BR-8284-01 4 121966924 121966924 G A NDNF Silent p.P23P 0.07 TCGA-BR-8284-01 4 134073201 134073201 G A PCDH10 Missense_Mutation p.G636R 0.15 deleterious(0) probably_damaging(1) TCGA-BR-8284-01 4 13606646 13606646 T C BOD1L1 Silent p.E626E 0.19 TCGA-BR-8284-01 4 166986858 166986858 G T TLL1 Missense_Mutation p.E677D 0.14 tolerated(0.07) possibly_damaging(0.845) TCGA-BR-8284-01 4 187074826 187074826 C T FAM149A Silent p.P38P 0.22 TCGA-BR-8284-01 4 188924094 188924094 G A ZFP42 Missense_Mutation p.A45T 0.11 tolerated(1) benign(0) TCGA-BR-8284-01 4 46125987 46125987 C A GABRG1 5'UTR 0.36 TCGA-BR-8284-01 4 46995377 46995377 C T GABRA4 Missense_Mutation p.R22H 0.10 tolerated(0.55) benign(0) TCGA-BR-8284-01 4 47517498 47517498 C T ATP10D Missense_Mutation p.A99V 0.14 deleterious(0) probably_damaging(0.999) TCGA-BR-8284-01 4 5627539 5627539 C A EVC2 Missense_Mutation p.K661N 0.17 tolerated(0.14) probably_damaging(1) TCGA-BR-8284-01 4 5803748 5803748 G A EVC Silent p.A792A 0.15 TCGA-BR-8284-01 4 6606906 6606906 C T MAN2B2 Missense_Mutation p.P555L 0.10 tolerated(0.38) benign(0.003) TCGA-BR-8284-01 4 69184574 69184574 A G YTHDC1 Missense_Mutation p.L564S 0.10 tolerated(0.09) benign(0.346) TCGA-BR-8284-01 4 72897896 72897896 C A NPFFR2 Missense_Mutation p.A93D 0.36 deleterious_low_confidence(0.04) benign(0) TCGA-BR-8284-01 4 79461950 79461950 C T FRAS1 Missense_Mutation p.A3904V 0.15 probably_damaging(0.932) TCGA-BR-8284-01 4 87744985 87744985 G A SLC10A6 Silent p.C330C 0.12 TCGA-BR-8284-01 4 89034556 89034556 T C ABCG2 Missense_Mutation p.K365E 0.13 tolerated(0.44) benign(0.002) TCGA-BR-8284-01 5 111066542 111066542 A - NREP 3'UTR 0.10 TCGA-BR-8284-01 5 127671202 127671202 G C FBN2 Nonsense_Mutation p.Y1264* 0.07 TCGA-BR-8284-01 5 133311636 133311636 A G VDAC1 Missense_Mutation p.W210R 0.05 deleterious(0.01) benign(0.061) TCGA-BR-8284-01 5 135513027 135513027 G A SMAD5 Missense_Mutation p.G419D 0.11 deleterious(0) probably_damaging(1) TCGA-BR-8284-01 5 13717570 13717570 C T DNAH5 Missense_Mutation p.A4187T 0.10 possibly_damaging(0.798) TCGA-BR-8284-01 5 139060342 139060342 G A CXXC5 Silent p.P78P 0.10 TCGA-BR-8284-01 5 139231209 139231209 G A NRG2 Silent p.R584R 0.17 TCGA-BR-8284-01 5 140346661 140346661 C T PCDHAC2 Missense_Mutation p.R104C 0.10 deleterious(0) probably_damaging(0.982) TCGA-BR-8284-01 5 140574118 140574118 G A PCDHB10 Missense_Mutation p.G665S 0.06 deleterious_low_confidence(0.01) possibly_damaging(0.503) TCGA-BR-8284-01 5 140627116 140627116 C T PCDHB15 Missense_Mutation p.T657M 0.07 deleterious_low_confidence(0.02) possibly_damaging(0.731) TCGA-BR-8284-01 5 140720916 140720916 C T PCDHGA2 Missense_Mutation p.A793V 0.06 tolerated_low_confidence(0.61) benign(0.001) TCGA-BR-8284-01 5 140812130 140812130 G A PCDHGA12 Missense_Mutation p.A602T 0.08 deleterious_low_confidence(0) possibly_damaging(0.906) TCGA-BR-8284-01 5 149294523 149294523 C A PDE6A Missense_Mutation p.E327D 0.07 deleterious(0.01) probably_damaging(0.989) TCGA-BR-8284-01 5 154396439 154396439 C A KIF4B Missense_Mutation p.P1007H 0.05 deleterious(0.02) benign(0.008) TCGA-BR-8284-01 5 156589984 156589984 C A FAM71B Missense_Mutation p.R431I 0.07 deleterious(0) probably_damaging(0.917) TCGA-BR-8284-01 5 158141123 158141123 A G EBF1 Splice_Site p.X397_splice 0.14 TCGA-BR-8284-01 5 16701576 16701576 G A MYO10 Silent p.C976C 0.08 TCGA-BR-8284-01 5 169680150 169680150 A C LCP2 Silent p.P406P 0.24 TCGA-BR-8284-01 5 173317108 173317108 G A CPEB4 Silent p.S124S 0.13 TCGA-BR-8284-01 5 17354467 17354467 G A CTD-2139B15.2 RNA 0.34 TCGA-BR-8284-01 5 176868758 176868758 C T GRK6 Missense_Mutation p.A567V 0.05 tolerated_low_confidence(0.19) unknown(0) TCGA-BR-8284-01 5 1814513 1814513 C T NDUFS6 Missense_Mutation p.R83W 0.22 deleterious(0) probably_damaging(0.973) TCGA-BR-8284-01 5 36257585 36257585 G A RANBP3L Missense_Mutation p.P273L 0.24 tolerated(0.83) benign(0) TCGA-BR-8284-01 5 44388640 44388640 C T FGF10 Missense_Mutation p.A49T 0.11 tolerated(0.16) benign(0.227) TCGA-BR-8284-01 5 7626396 7626396 G A ADCY2 Silent p.S229S 0.24 TCGA-BR-8284-01 5 79024982 79024982 C T CMYA5 Missense_Mutation p.R132W 0.07 possibly_damaging(0.876) TCGA-BR-8284-01 6 109466443 109466443 C T CEP57L1 Missense_Mutation p.H7Y 0.08 deleterious(0.04) benign(0.015) TCGA-BR-8284-01 6 109771540 109771540 C T MICAL1 Missense_Mutation p.R385H 0.09 deleterious(0.04) possibly_damaging(0.901) TCGA-BR-8284-01 6 12164647 12164647 G A HIVEP1 Missense_Mutation p.D2704N 0.13 tolerated(0.09) probably_damaging(0.961) TCGA-BR-8284-01 6 127440347 127440347 C T RSPO3 Nonsense_Mutation p.R4* 0.10 TCGA-BR-8284-01 6 131277325 131277326 - T EPB41L2 Frame_Shift_Ins p.E101Rfs*8 0.08 TCGA-BR-8284-01 6 134210545 134210545 G A TCF21 Missense_Mutation p.G4S 0.09 deleterious_low_confidence(0) benign(0.433) TCGA-BR-8284-01 6 135239833 135239833 G T ALDH8A1 Missense_Mutation p.P395Q 0.11 deleterious(0) probably_damaging(1) TCGA-BR-8284-01 6 136599130 136599130 A G BCLAF1 Missense_Mutation p.S297P 0.05 tolerated(0.3) possibly_damaging(0.504) TCGA-BR-8284-01 6 153043061 153043061 C A MYCT1 Silent p.R127R 0.10 TCGA-BR-8284-01 6 154520863 154520863 A G IPCEF1 Silent p.S283S 0.12 TCGA-BR-8284-01 6 157222537 157222537 G A ARID1B Missense_Mutation p.V602M 0.27 possibly_damaging(0.891) TCGA-BR-8284-01 6 160468929 160468929 G A IGF2R Missense_Mutation p.D779N 0.07 deleterious(0) probably_damaging(1) TCGA-BR-8284-01 6 161006078 161006078 G A LPA Missense_Mutation p.A1430V 0.06 tolerated(0.1) possibly_damaging(0.686) TCGA-BR-8284-01 6 161781145 161781145 G A PARK2 Silent p.R420R 0.09 TCGA-BR-8284-01 6 26370758 26370758 C T BTN3A2 Silent p.S214S 0.10 TCGA-BR-8284-01 6 26388404 26388404 C T BTN2A2 Silent p.D202D 0.10 TCGA-BR-8284-01 6 27100525 27100525 G A HIST1H2BJ Missense_Mutation p.P2L 0.34 deleterious_low_confidence(0) unknown(0) TCGA-BR-8284-01 6 27834673 27834673 T C HIST1H1B Missense_Mutation p.K212R 0.19 tolerated(0.53) unknown(0) TCGA-BR-8284-01 6 41774530 41774530 C T USP49 Silent p.P64P 0.11 TCGA-BR-8284-01 6 43193638 43193638 G T DNPH1 Intron 0.11 TCGA-BR-8284-01 6 44219246 44219247 - A HSP90AB1 Frame_Shift_Ins p.N407Kfs*4 0.19 TCGA-BR-8284-01 6 49803156 49803156 G T CRISP1 Missense_Mutation p.T208N 0.07 deleterious(0) probably_damaging(0.923) TCGA-BR-8284-01 6 70423555 70423555 G A LMBRD1 Silent p.G299G 0.07 TCGA-BR-8284-01 6 90402780 90402780 G A MDN1 Silent p.Y3323Y 0.09 TCGA-BR-8284-01 7 100348417 100348417 G A ZAN Silent p.A473A 0.09 TCGA-BR-8284-01 7 107303837 107303837 C T SLC26A4 Silent p.D87D 0.18 TCGA-BR-8284-01 7 111368486 111368486 C T DOCK4 Silent p.P1915P 0.08 TCGA-BR-8284-01 7 131830026 131830026 C T PLXNA4 Missense_Mutation p.D1693N 0.06 deleterious(0) probably_damaging(1) TCGA-BR-8284-01 7 143747978 143747978 C T OR2A5 Missense_Mutation p.L162F 0.10 deleterious(0.04) probably_damaging(0.99) TCGA-BR-8284-01 7 143772113 143772113 G T OR2A25 Missense_Mutation p.K267N 0.09 deleterious(0.03) benign(0.02) TCGA-BR-8284-01 7 150325544 150325544 T C GIMAP6 Missense_Mutation p.K48E 0.07 deleterious(0) probably_damaging(1) TCGA-BR-8284-01 7 16900207 16900207 T C AGR3 Missense_Mutation p.D123G 0.08 deleterious(0.02) probably_damaging(0.937) TCGA-BR-8284-01 7 21521594 21521594 T C SP4 Missense_Mutation p.C654R 0.08 deleterious(0) probably_damaging(0.997) TCGA-BR-8284-01 7 21779241 21779241 G A DNAH11 Missense_Mutation p.A2629T 0.18 benign(0.047) TCGA-BR-8284-01 7 21923928 21923928 G A DNAH11 Missense_Mutation p.R4143H 0.08 benign(0.111) TCGA-BR-8284-01 7 24901354 24901354 T C OSBPL3 Missense_Mutation p.H302R 0.13 deleterious(0) probably_damaging(0.917) TCGA-BR-8284-01 7 37951870 37951870 G A SFRP4 Silent p.V214V 0.28 TCGA-BR-8284-01 7 4185509 4185509 G A SDK1 Missense_Mutation p.E1462K 0.09 tolerated(0.33) benign(0.183) TCGA-BR-8284-01 7 44579712 44579712 T A NPC1L1 Missense_Mutation p.Q95L 0.09 deleterious(0) probably_damaging(1) TCGA-BR-8284-01 7 47968815 47968815 T C PKD1L1 Missense_Mutation p.H349R 0.07 deleterious(0) probably_damaging(0.981) TCGA-BR-8284-01 7 48391962 48391962 C A ABCA13 Nonsense_Mutation p.Y3522* 0.13 TCGA-BR-8284-01 7 6187480 6187480 C T USP42 Missense_Mutation p.A448V 0.05 tolerated(0.09) possibly_damaging(0.503) TCGA-BR-8284-01 7 6485687 6485687 G A DAGLB Silent p.D48D 0.08 TCGA-BR-8284-01 7 892494 892494 G A SUN1 Missense_Mutation p.V320M 0.04 tolerated(0.07) benign(0.227) TCGA-BR-8284-01 7 91694563 91694563 A G AKAP9 Missense_Mutation p.E1999G 0.09 probably_damaging(0.999) TCGA-BR-8284-01 7 931927 931927 A - GET4 Frame_Shift_Del p.N208Tfs*45 0.08 TCGA-BR-8284-01 8 113702268 113702268 C A CSMD3 Nonsense_Mutation p.E662* 0.10 TCGA-BR-8284-01 8 142228927 142228927 G A SLC45A4 Missense_Mutation p.A220V 0.12 tolerated(0.28) benign(0.007) TCGA-BR-8284-01 8 144990986 144990986 C T PLEC Missense_Mutation p.A4472T 0.09 probably_damaging(1) TCGA-BR-8284-01 8 25280807 25280807 G T GNRH1 Missense_Mutation p.L14M 0.11 tolerated(0.08) probably_damaging(0.984) TCGA-BR-8284-01 8 33449592 33449592 C T DUSP26 Missense_Mutation p.R192Q 0.08 deleterious(0.01) benign(0.036) TCGA-BR-8284-01 8 52321502 52321502 G A PXDNL Silent p.I894I 0.13 TCGA-BR-8284-01 8 54163414 54163414 T C OPRK1 Missense_Mutation p.I62V 0.11 deleterious(0.05) probably_damaging(0.99) TCGA-BR-8284-01 8 56436682 56436682 C T XKR4 Nonsense_Mutation p.R617* 0.06 TCGA-BR-8284-01 8 8176049 8176049 C T SGK223 Missense_Mutation p.R1279Q 0.13 probably_damaging(0.992) TCGA-BR-8284-01 9 102590482 102590482 C T NR4A3 Missense_Mutation p.T64M 0.11 deleterious(0) probably_damaging(1) TCGA-BR-8284-01 9 107533147 107533147 G T NIPSNAP3B Missense_Mutation p.V150F 0.18 deleterious(0) benign(0.094) TCGA-BR-8284-01 9 117070 117070 G - FOXD4 Frame_Shift_Del p.C351Afs*57 0.15 TCGA-BR-8284-01 9 128064646 128064646 T C GAPVD1 Silent p.F190F 0.11 TCGA-BR-8284-01 9 139929558 139929558 G A C9orf139 3'UTR 0.10 TCGA-BR-8284-01 9 140074684 140074684 C A ANAPC2 Missense_Mutation p.E613D 0.08 tolerated(0.42) benign(0.005) TCGA-BR-8284-01 9 14859271 14859271 G A FREM1 Missense_Mutation p.R181W 0.20 tolerated(0.24) benign(0) TCGA-BR-8284-01 9 20620722 20620722 T C MLLT3 Missense_Mutation p.S42G 0.06 tolerated(0.26) possibly_damaging(0.757) TCGA-BR-8284-01 9 2653909 2653909 A G VLDLR 3'UTR 0.07 TCGA-BR-8284-01 9 32634323 32634323 C T TAF1L Missense_Mutation p.E419K 0.10 deleterious(0.03) possibly_damaging(0.905) TCGA-BR-8284-01 9 37740286 37740286 C T FRMPD1 Silent p.S587S 0.07 TCGA-BR-8284-01 9 87339221 87339221 C T NTRK2 Missense_Mutation p.A268V 0.26 tolerated(0.06) probably_damaging(0.999) TCGA-BR-8284-01 9 87549188 87549188 A C NTRK2 Missense_Mutation p.K582T 0.11 deleterious(0) possibly_damaging(0.479) TCGA-BR-8284-01 9 95491364 95491364 A G BICD2 Missense_Mutation p.L132P 0.08 deleterious(0.04) possibly_damaging(0.894) TCGA-BR-8284-01 9 98278952 98278952 C T RP11-435O5.4 3'Flank 0.09 TCGA-BR-8284-01 X 103434340 103434340 C T FAM199X Silent p.L350L 0.05 TCGA-BR-8284-01 X 110494308 110494308 C T CAPN6 Missense_Mutation p.R332H 0.04 tolerated(0.2) benign(0) TCGA-BR-8284-01 X 135581814 135581814 G A HTATSF1 Missense_Mutation p.A82T 0.13 tolerated(0.06) benign(0.028) TCGA-BR-8284-01 X 147026475 147026475 G A FMR1 Missense_Mutation p.E520K 0.17 deleterious(0.03) possibly_damaging(0.879) TCGA-BR-8284-01 X 152159298 152159298 C T PNMA5 Missense_Mutation p.R282H 0.05 tolerated(0.3) benign(0.012) TCGA-BR-8284-01 X 152823642 152823642 G A ATP2B3 Missense_Mutation p.V836I 0.30 deleterious(0) possibly_damaging(0.888) TCGA-BR-8284-01 X 24757524 24757524 C A POLA1 Silent p.T685T 0.12 TCGA-BR-8284-01 X 31191669 31191669 G T DMD Missense_Mutation p.H3439N 0.16 benign(0.216) TCGA-BR-8284-01 X 34149433 34149433 C T FAM47A Silent p.P321P 0.17 TCGA-BR-8284-01 X 3573440 3573440 G A PRKX Missense_Mutation p.H117Y 0.08 deleterious(0) possibly_damaging(0.855) TCGA-BR-8284-01 X 47088011 47088011 C T CDK16 Missense_Mutation p.A548V 0.07 tolerated(0.05) benign(0.051) TCGA-BR-8284-01 X 48972594 48972594 G A GPKOW Missense_Mutation p.R333W 0.05 deleterious(0) probably_damaging(0.999) TCGA-BR-8284-01 X 64947739 64947739 G A MSN Missense_Mutation p.G54S 0.11 deleterious(0.03) probably_damaging(0.986) TCGA-BR-8284-01 X 64959699 64959699 C T MSN Missense_Mutation p.R560C 0.09 deleterious(0) probably_damaging(0.999) TCGA-BR-8284-01 X 65476119 65476119 C T HEPH Missense_Mutation p.P1002L 0.25 deleterious(0.03) benign(0.297) TCGA-BR-8284-01 X 72667186 72667186 G T CDX4 Missense_Mutation p.G33W 0.11 deleterious(0.01) probably_damaging(1) TCGA-BR-8284-01 X 75650837 75650837 G C MAGEE1 Missense_Mutation p.L838F 0.19 deleterious(0) probably_damaging(0.999) TCGA-BR-8284-01 X 77245353 77245353 T C ATP7A Missense_Mutation p.L412P 0.10 deleterious(0) probably_damaging(1) TCGA-BR-8284-01 X 78216864 78216864 G A P2RY10 Missense_Mutation p.A283T 0.12 tolerated(0.93) benign(0.001) TCGA-BR-8284-01 X 79279618 79279618 A G TBX22 Missense_Mutation p.Y138C 0.09 deleterious(0) probably_damaging(1) TCGA-BR-8284-01 X 79959053 79959053 C A BRWD3 Nonsense_Mutation p.E921* 0.20 TCGA-BR-8284-01 X 88008424 88008424 T A CPXCR1 Nonsense_Mutation p.Y3* 0.27 TCGA-BR-8284-01 X 89177431 89177431 G A TGIF2LX Missense_Mutation p.R116H 0.07 tolerated(0.06) benign(0) TCGA-BR-8285-01 10 102509565 102509565 G A PAX2 Missense_Mutation p.V36M 0.15 deleterious(0.01) possibly_damaging(0.829) TCGA-BR-8285-01 10 124753769 124753769 A - IKZF5 Frame_Shift_Del p.S263Pfs*15 0.14 TCGA-BR-8285-01 10 125434390 125434390 A C GPR26 Missense_Mutation p.K242T 0.08 tolerated(0.11) possibly_damaging(0.533) TCGA-BR-8285-01 10 38121917 38121917 A C ZNF248 Silent p.T122T 0.15 TCGA-BR-8285-01 10 68686999 68686999 C T LRRTM3 Missense_Mutation p.R109C 0.20 deleterious(0) probably_damaging(1) TCGA-BR-8285-01 11 61318865 61318865 T G SYT7 Missense_Mutation p.K69T 0.07 tolerated_low_confidence(0.08) possibly_damaging(0.607) TCGA-BR-8285-01 11 65351134 65351134 C T EHBP1L1 Silent p.A997A 0.17 TCGA-BR-8285-01 11 83676442 83676442 C A DLG2 Missense_Mutation p.V376L 0.09 tolerated(0.18) possibly_damaging(0.777) TCGA-BR-8285-01 12 11061014 11061014 A C TAS2R13 Missense_Mutation p.V295G 0.12 deleterious(0.02) benign(0.25) TCGA-BR-8285-01 12 120534926 120534926 C T RAB35 3'UTR 0.18 TCGA-BR-8285-01 12 51636252 51636252 G A DAZAP2 Missense_Mutation p.G147D 0.18 deleterious_low_confidence(0) benign(0.177) TCGA-BR-8285-01 12 6858088 6858088 C T MLF2 Missense_Mutation p.R207H 0.09 tolerated(0.1) possibly_damaging(0.549) TCGA-BR-8285-01 13 49777299 49777299 A G FNDC3A Missense_Mutation p.K1054R 0.21 tolerated(0.88) benign(0.005) TCGA-BR-8285-01 14 105353089 105353089 T G CEP170B Missense_Mutation p.V838G 0.08 deleterious(0.01) benign(0.034) TCGA-BR-8285-01 14 105613026 105613026 C T JAG2 Missense_Mutation p.G839R 0.12 deleterious(0) probably_damaging(0.999) TCGA-BR-8285-01 14 25043976 25043976 G A CTSG Missense_Mutation p.R82W 0.10 tolerated(0.06) possibly_damaging(0.773) TCGA-BR-8285-01 14 76964669 76964669 C A ESRRB Silent p.G390G 0.15 TCGA-BR-8285-01 15 41988433 41988433 G A MGA Missense_Mutation p.E409K 0.06 deleterious(0) probably_damaging(0.965) TCGA-BR-8285-01 15 74425568 74425568 G A ISLR2 Missense_Mutation p.R158Q 0.04 tolerated(0.1) benign(0.398) TCGA-BR-8285-01 15 75310759 75310759 C T SCAMP5 Silent p.C132C 0.14 TCGA-BR-8285-01 15 76629257 76629257 G A ISL2 Silent p.L11L 0.09 TCGA-BR-8285-01 15 79051843 79051843 G A ADAMTS7 Missense_Mutation p.R1661C 0.08 deleterious(0) probably_damaging(0.912) TCGA-BR-8285-01 16 21693073 21693073 C T OTOA Missense_Mutation p.T65M 0.09 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-BR-8285-01 16 23700042 23700042 G A PLK1 Missense_Mutation p.D416N 0.11 deleterious(0) probably_damaging(0.998) TCGA-BR-8285-01 16 52473872 52473872 A G TOX3 Silent p.A332A 0.13 TCGA-BR-8285-01 16 731247 731247 C T STUB1 Silent p.R85R 0.14 TCGA-BR-8285-01 16 81134713 81134713 G A GCSH 5'Flank 0.12 TCGA-BR-8285-01 17 10432167 10432167 G A MYH2 Missense_Mutation p.A1195V 0.14 tolerated(0.13) benign(0.073) TCGA-BR-8285-01 17 34173908 34173908 A T TAF15 Splice_Site p.X580_splice 0.16 TCGA-BR-8285-01 17 8018980 8018980 G A ALOXE3 Missense_Mutation p.P259S 0.06 deleterious(0.04) probably_damaging(0.913) TCGA-BR-8285-01 18 31322975 31322975 G A ASXL3 Missense_Mutation p.A1055T 0.20 probably_damaging(0.998) TCGA-BR-8285-01 18 58038852 58038852 G A MC4R Missense_Mutation p.A244V 0.09 deleterious(0.02) probably_damaging(0.996) TCGA-BR-8285-01 18 60241908 60241908 C T ZCCHC2 Missense_Mutation p.T865M 0.15 deleterious(0.01) possibly_damaging(0.807) TCGA-BR-8285-01 18 61326660 61326660 G A SERPINB3 Silent p.F108F 0.08 TCGA-BR-8285-01 18 74627680 74627680 C A ZNF236 Missense_Mutation p.H1045N 0.11 deleterious(0) probably_damaging(0.997) TCGA-BR-8285-01 19 1073169 1073169 C T HMHA1 Missense_Mutation p.P164L 0.13 deleterious(0.02) benign(0.388) TCGA-BR-8285-01 19 22270878 22270878 A T ZNF257 Missense_Mutation p.E109V 0.05 deleterious(0) possibly_damaging(0.71) TCGA-BR-8285-01 19 37440540 37440540 T G ZNF568 Missense_Mutation p.F162C 0.18 deleterious(0.01) benign(0.078) TCGA-BR-8285-01 19 40899953 40899953 G A PRX Missense_Mutation p.R1436W 0.09 deleterious(0) benign(0.082) TCGA-BR-8285-01 19 56392864 56392864 A G NLRP4 Missense_Mutation p.T966A 0.07 tolerated(0.06) possibly_damaging(0.677) TCGA-BR-8285-01 19 56599506 56599506 C T ZNF787 Silent p.S345S 0.18 TCGA-BR-8285-01 19 58991586 58991586 G A ZNF446 Silent p.P282P 0.16 TCGA-BR-8285-01 1 114248779 114248780 - TTGACC PHTF1 In_Frame_Ins p.V467_N468insKV 0.08 TCGA-BR-8285-01 1 159923305 159923305 G C SLAMF9 Missense_Mutation p.A62G 0.09 deleterious(0.01) probably_damaging(0.997) TCGA-BR-8285-01 1 185976303 185976303 G A HMCN1 Missense_Mutation p.G1507R 0.15 probably_damaging(1) TCGA-BR-8285-01 1 186147734 186147734 C A HMCN1 Missense_Mutation p.P5377H 0.14 benign(0.243) TCGA-BR-8285-01 1 207085193 207085193 C T FAIM3 Missense_Mutation p.G198S 0.16 deleterious(0.01) benign(0.055) TCGA-BR-8285-01 1 248458297 248458297 T G OR2T12 Missense_Mutation p.N195T 0.08 tolerated(0.79) benign(0.309) TCGA-BR-8285-01 1 43777368 43777368 C T TIE1 Missense_Mutation p.R454W 0.08 deleterious(0) possibly_damaging(0.79) TCGA-BR-8285-01 1 53580580 53580580 G A SLC1A7 Missense_Mutation p.A94V 0.10 tolerated(1) possibly_damaging(0.487) TCGA-BR-8285-01 1 6100663 6100663 G A AL035406.1 Silent p.A16A 0.11 TCGA-BR-8285-01 1 84961055 84961055 G A RPF1 Splice_Site p.X206_splice 0.20 TCGA-BR-8285-01 20 30686878 30686878 G A HCK Missense_Mutation p.V440I 0.10 deleterious(0.04) benign(0.231) TCGA-BR-8285-01 20 47645175 47645175 C T ARFGEF2 Missense_Mutation p.S1678F 0.10 deleterious(0.03) benign(0.012) TCGA-BR-8285-01 20 62187047 62187047 G A C20orf195 Missense_Mutation p.D11N 0.11 tolerated_low_confidence(0.61) benign(0.004) TCGA-BR-8285-01 22 35942983 35942983 C T RASD2 Missense_Mutation p.R43C 0.19 deleterious(0) probably_damaging(0.973) TCGA-BR-8285-01 22 42610498 42610498 A T TCF20 Missense_Mutation p.Y272N 0.13 possibly_damaging(0.447) TCGA-BR-8285-01 22 50752640 50752640 C A DENND6B Missense_Mutation p.K378N 0.12 deleterious(0.02) possibly_damaging(0.533) TCGA-BR-8285-01 2 101095857 101095857 G A NMS Missense_Mutation p.A102T 0.11 tolerated(0.42) benign(0.03) TCGA-BR-8285-01 2 121036307 121036307 G A RALB Missense_Mutation p.G23R 0.14 deleterious(0.01) probably_damaging(0.995) TCGA-BR-8285-01 2 170038826 170038826 C A LRP2 Missense_Mutation p.K3283N 0.11 benign(0.17) TCGA-BR-8285-01 2 176981590 176981590 C A HOXD10 Missense_Mutation p.A10D 0.13 deleterious(0) probably_damaging(0.943) TCGA-BR-8285-01 2 179455043 179455043 A G TTN Missense_Mutation p.I20470T 0.17 TCGA-BR-8285-01 2 202150039 202150039 C T CASP8 Nonsense_Mutation p.R494* 0.13 TCGA-BR-8285-01 2 219458966 219458966 C T RQCD1 Silent p.T289T 0.30 TCGA-BR-8285-01 2 62066680 62066680 G A FAM161A Missense_Mutation p.R487C 0.21 tolerated(0.08) benign(0.067) TCGA-BR-8285-01 2 64778716 64778716 A C AFTPH Missense_Mutation p.E36D 0.13 tolerated(0.39) benign(0.372) TCGA-BR-8285-01 3 11078556 11078556 A C SLC6A1 Missense_Mutation p.Q568H 0.11 tolerated(0.24) benign(0.002) TCGA-BR-8285-01 3 132948168 132948168 T G TMEM108 Missense_Mutation p.L5V 0.13 tolerated_low_confidence(0.19) possibly_damaging(0.801) TCGA-BR-8285-01 3 138426123 138426123 C T PIK3CB Missense_Mutation p.E470K 0.17 tolerated(0.47) benign(0.041) TCGA-BR-8285-01 3 151165563 151165563 G A IGSF10 Missense_Mutation p.R736C 0.09 deleterious(0.03) possibly_damaging(0.796) TCGA-BR-8285-01 3 184675267 184675267 T C VPS8 Silent p.T1047T 0.13 TCGA-BR-8285-01 3 42679964 42679964 G T NKTR Missense_Mutation p.S923I 0.14 deleterious_low_confidence(0.04) benign(0.081) TCGA-BR-8285-01 4 13617045 13617045 C T BOD1L1 Silent p.Q150Q 0.15 TCGA-BR-8285-01 4 145568031 145568031 G T HHIP Silent p.L68L 0.10 TCGA-BR-8285-01 4 185310092 185310092 G - IRF2 Frame_Shift_Del p.T291Pfs*27 0.17 TCGA-BR-8285-01 4 20555436 20555436 G A SLIT2 Missense_Mutation p.G857E 0.14 deleterious(0) probably_damaging(1) TCGA-BR-8285-01 4 47427730 47427730 A C GABRB1 Missense_Mutation p.I374L 0.13 tolerated(0.4) benign(0.008) TCGA-BR-8285-01 4 48636414 48636414 G A FRYL Missense_Mutation p.T5M 0.11 deleterious(0.02) possibly_damaging(0.573) TCGA-BR-8285-01 4 70513344 70513344 G A UGT2A1 Silent p.L7L 0.29 TCGA-BR-8285-01 5 140255189 140255189 C T PCDHA12 Silent p.F44F 0.10 TCGA-BR-8285-01 5 140797832 140797832 G A PCDHGB7 Missense_Mutation p.D136N 0.16 tolerated(0.94) benign(0.009) TCGA-BR-8285-01 5 141244950 141244950 C T PCDH1 Missense_Mutation p.E316K 0.16 tolerated(0.15) benign(0.416) TCGA-BR-8285-01 5 14358426 14358426 A C TRIO Missense_Mutation p.K729T 0.10 benign(0.258) TCGA-BR-8285-01 5 145532787 145532787 A G LARS Silent p.L412L 0.05 TCGA-BR-8285-01 5 3596470 3596470 C T IRX1 Missense_Mutation p.A84V 0.23 deleterious(0.02) benign(0.067) TCGA-BR-8285-01 5 66459756 66459756 G A MAST4 Silent p.R1583R 0.05 TCGA-BR-8285-01 5 68412248 68412248 A G SLC30A5 Missense_Mutation p.K367R 0.03 tolerated(0.42) benign(0.007) TCGA-BR-8285-01 5 99871538 99871538 G T FAM174A Nonsense_Mutation p.E102* 0.11 TCGA-BR-8285-01 6 127837076 127837076 T C SOGA3 Silent p.G228G 0.14 TCGA-BR-8285-01 6 131913664 131913664 G A MED23 Intron 0.16 TCGA-BR-8285-01 6 139583902 139583902 C T TXLNB Silent p.A232A 0.16 TCGA-BR-8285-01 6 26509108 26509108 A C BTN1A1 Missense_Mutation p.E429D 0.23 tolerated(0.1) benign(0.008) TCGA-BR-8285-01 6 30570080 30570080 G T PPP1R10 Silent p.R782R 0.13 TCGA-BR-8285-01 6 30570172 30570172 G A PPP1R10 Missense_Mutation p.R752C 0.14 tolerated_low_confidence(0.24) unknown(0) TCGA-BR-8285-01 6 32976109 32976109 T C HLA-DOA Intron 0.17 TCGA-BR-8285-01 6 43473500 43473500 C T TJAP1 Silent p.R527R 0.29 TCGA-BR-8285-01 6 85448240 85448240 T A TBX18 Missense_Mutation p.E358D 0.12 deleterious(0.04) probably_damaging(0.956) TCGA-BR-8285-01 7 103151360 103151360 G A RELN Missense_Mutation p.R2738W 0.13 deleterious(0) probably_damaging(0.994) TCGA-BR-8285-01 7 108212273 108212273 A G DNAJB9 Missense_Mutation p.K35E 0.09 deleterious(0.04) possibly_damaging(0.517) TCGA-BR-8285-01 7 131148071 131148071 G A MKLN1 Missense_Mutation p.E541K 0.12 deleterious(0.05) benign(0.231) TCGA-BR-8285-01 7 149129362 149129362 G A ZNF777 Silent p.P667P 0.26 TCGA-BR-8285-01 7 29983686 29983686 G A SCRN1 Missense_Mutation p.H171Y 0.09 tolerated(0.07) benign(0.243) TCGA-BR-8285-01 7 43436443 43436443 G A HECW1 Missense_Mutation p.V196I 0.27 tolerated(0.39) benign(0.002) TCGA-BR-8285-01 7 6730434 6730434 T A ZNF12 3'UTR 0.18 TCGA-BR-8285-01 8 104922645 104922645 G T RIMS2 Intron 0.14 TCGA-BR-8285-01 8 25266394 25266394 C T DOCK5 Missense_Mutation p.S1781L 0.09 tolerated(0.14) benign(0) TCGA-BR-8285-01 8 39695695 39695695 C T ADAM2 Missense_Mutation p.V4I 0.11 tolerated(0.3) benign(0.001) TCGA-BR-8285-01 8 71593358 71593358 T C XKR9 Missense_Mutation p.L22S 0.14 deleterious(0) possibly_damaging(0.782) TCGA-BR-8285-01 8 94934649 94934649 C G PDP1 Missense_Mutation p.A146G 0.11 deleterious(0.05) benign(0.217) TCGA-BR-8285-01 9 122011287 122011287 G A BRINP1 Silent p.T120T 0.21 TCGA-BR-8285-01 9 27185587 27185587 G A TEK Silent p.V429V 0.15 TCGA-BR-8285-01 9 37541712 37541712 C A FBXO10 Missense_Mutation p.L18F 0.13 tolerated(0.07) probably_damaging(0.999) TCGA-BR-8285-01 X 100912607 100912607 G A ARMCX2 5'UTR 0.10 TCGA-BR-8285-01 X 102471359 102471359 A G BEX4 Missense_Mutation p.K93R 0.14 deleterious(0.04) probably_damaging(0.992) TCGA-BR-8285-01 X 110654242 110654242 C A DCX 5'UTR 0.15 TCGA-BR-8285-01 X 135445660 135445660 A G GPR112 Silent p.K2434K 0.14 TCGA-BR-8285-01 X 153001826 153001826 C A ABCD1 Silent p.R418R 0.16 TCGA-BR-8285-01 X 153219978 153219978 T C HCFC1 Missense_Mutation p.N1291S 0.18 deleterious_low_confidence(0) probably_damaging(0.952) TCGA-BR-8285-01 X 153689895 153689895 C T PLXNA3 Missense_Mutation p.R351C 0.16 deleterious(0) possibly_damaging(0.646) TCGA-BR-8285-01 X 17073008 17073008 G A REPS2 Missense_Mutation p.R350Q 0.27 deleterious(0.01) benign(0.215) TCGA-BR-8285-01 X 48403295 48403295 G A TBC1D25 Missense_Mutation p.R91Q 0.06 tolerated(0.57) benign(0.121) TCGA-BR-8285-01 X 55047559 55047559 T G ALAS2 Silent p.S188S 0.17 TCGA-BR-8286-01 10 127427012 127427012 A C EDRF1 Missense_Mutation p.K660T 0.06 tolerated(0.11) possibly_damaging(0.493) TCGA-BR-8286-01 10 15014613 15014613 C T MEIG1 Silent p.V80V 0.13 TCGA-BR-8286-01 10 20500613 20500613 T C PLXDC2 Silent p.F359F 0.15 TCGA-BR-8286-01 10 31816022 31816022 G A ZEB1 Missense_Mutation p.E1070K 0.43 tolerated_low_confidence(0.1) benign(0) TCGA-BR-8286-01 10 32562088 32562088 C T EPC1 Intron 0.21 TCGA-BR-8286-01 10 45430170 45430170 C A TMEM72 Missense_Mutation p.A139D 0.30 tolerated(0.62) benign(0.006) TCGA-BR-8286-01 10 48428669 48428669 G A GDF10 Missense_Mutation p.A406V 0.12 deleterious(0) possibly_damaging(0.877) TCGA-BR-8286-01 10 58118593 58118593 G A ZWINT Missense_Mutation p.A199V 0.28 tolerated(0.06) possibly_damaging(0.866) TCGA-BR-8286-01 10 70547722 70547722 T G CCAR1 Silent p.S973S 0.18 TCGA-BR-8286-01 10 99439503 99439503 G C AVPI1 Missense_Mutation p.R54G 0.11 deleterious(0) probably_damaging(0.94) TCGA-BR-8286-01 11 116692384 116692384 C T APOA4 Silent p.E130E 0.32 TCGA-BR-8286-01 11 119183298 119183298 C T MCAM Missense_Mutation p.R267H 0.22 tolerated(0.4) benign(0.032) TCGA-BR-8286-01 11 123886393 123886393 C T OR10G4 Silent p.L38L 0.38 TCGA-BR-8286-01 11 128679074 128679074 G T FLI1 Silent p.P268P 0.14 TCGA-BR-8286-01 11 1860928 1860928 T A TNNI2 Translation_Start_Site p.M1? 0.20 deleterious(0) benign(0.273) TCGA-BR-8286-01 11 2167572 2167572 G A INS-IGF2 3'Flank 0.24 TCGA-BR-8286-01 11 33572687 33572687 G T KIAA1549L Silent p.V904V 0.48 TCGA-BR-8286-01 11 4936037 4936037 A C OR51G2 Missense_Mutation p.L286R 0.20 deleterious(0.01) probably_damaging(0.94) TCGA-BR-8286-01 11 4936528 4936528 A G OR51G2 Silent p.S122S 0.18 TCGA-BR-8286-01 11 4967766 4967766 A T OR51A4 Missense_Mutation p.L189M 0.08 tolerated(0.14) probably_damaging(0.998) TCGA-BR-8286-01 11 56020329 56020329 T G OR5T3 Silent p.S218S 0.06 TCGA-BR-8286-01 11 58189920 58189920 G C OR5B2 Missense_Mutation p.A272G 0.44 deleterious_low_confidence(0) possibly_damaging(0.809) TCGA-BR-8286-01 11 6422615 6422615 G T APBB1 Silent p.L514L 0.17 TCGA-BR-8286-01 11 71208604 71208604 A T NADSYN1 Missense_Mutation p.S614C 0.28 deleterious(0) probably_damaging(0.986) TCGA-BR-8286-01 11 72307656 72307657 - C PDE2A Frame_Shift_Ins p.A157Gfs*15 0.33 TCGA-BR-8286-01 12 117914308 117914308 T G KSR2 Missense_Mutation p.K848T 0.16 deleterious(0.05) benign(0.341) TCGA-BR-8286-01 12 122219169 122219169 G A TMEM120B 3'UTR 0.31 TCGA-BR-8286-01 12 52912853 52912853 T A KRT5 Missense_Mutation p.E216V 0.22 deleterious(0.02) possibly_damaging(0.596) TCGA-BR-8286-01 12 56420736 56420736 G A IKZF4 Missense_Mutation p.R153Q 0.28 deleterious(0.01) probably_damaging(0.994) TCGA-BR-8286-01 12 8375360 8375360 C T FAM90A1 Silent p.P151P 0.57 TCGA-BR-8286-01 13 108518522 108518522 G A FAM155A Silent p.G141G 0.17 TCGA-BR-8286-01 13 32911315 32911315 G C BRCA2 Silent p.V941V 0.38 TCGA-BR-8286-01 13 36049997 36049997 T G MAB21L1 Silent p.S93S 0.25 TCGA-BR-8286-01 13 36367576 36367576 G C DCLK1 Missense_Mutation p.A662G 0.36 tolerated(0.09) possibly_damaging(0.567) TCGA-BR-8286-01 14 59791093 59791093 C A DAAM1 Missense_Mutation p.L304I 0.51 deleterious(0) unknown(0) TCGA-BR-8286-01 15 45433204 45433204 G A DUOX1 Missense_Mutation p.V501I 0.53 tolerated(1) benign(0.001) TCGA-BR-8286-01 15 49148239 49148239 C T SHC4 Missense_Mutation p.V385I 0.27 tolerated(0.57) benign(0.001) TCGA-BR-8286-01 16 28841303 28841303 G A ATXN2L Missense_Mutation p.G320R 0.08 deleterious(0.02) probably_damaging(0.992) TCGA-BR-8286-01 16 4848162 4848162 C T ROGDI Silent p.P185P 0.30 TCGA-BR-8286-01 16 66976138 66976138 T C CES2 Missense_Mutation p.V487A 0.51 tolerated(0.06) possibly_damaging(0.879) TCGA-BR-8286-01 16 67918031 67918031 G A EDC4 Missense_Mutation p.V1396M 0.26 deleterious(0.02) benign(0.125) TCGA-BR-8286-01 16 75513372 75513372 C G CHST6 Missense_Mutation p.D119H 0.07 tolerated(0.13) probably_damaging(0.977) TCGA-BR-8286-01 16 9857925 9857925 C T GRIN2A Missense_Mutation p.R1159H 0.51 tolerated(0.35) benign(0.013) TCGA-BR-8286-01 17 18166065 18166065 C T MIEF2 Missense_Mutation p.R22W 0.28 deleterious(0.02) benign(0.011) TCGA-BR-8286-01 17 28887643 28887643 C T TBC1D29 Silent p.L29L 0.20 TCGA-BR-8286-01 17 38792281 38792281 C T SMARCE1 Missense_Mutation p.R148H 0.40 tolerated(0.06) possibly_damaging(0.522) TCGA-BR-8286-01 17 72295929 72295929 T C DNAI2 Missense_Mutation p.V266A 0.14 tolerated(0.06) benign(0.364) TCGA-BR-8286-01 17 7577548 7577548 C T TP53 Missense_Mutation p.G245S 0.62 deleterious(0) probably_damaging(1) TCGA-BR-8286-01 18 44683851 44683851 G A IER3IP1 Missense_Mutation p.S50L 0.53 tolerated(0.12) benign(0.061) TCGA-BR-8286-01 18 54305681 54305681 G C TXNL1 5'UTR 0.20 TCGA-BR-8286-01 18 61231355 61231355 T C SERPINB12 Splice_Site p.X215_splice 0.25 TCGA-BR-8286-01 18 61255944 61255944 C A SERPINB13 Missense_Mutation p.L15I 0.44 deleterious(0.03) probably_damaging(0.999) TCGA-BR-8286-01 19 35232159 35232159 A G ZNF181 Silent p.K291K 0.26 TCGA-BR-8286-01 19 38160229 38160229 T C ZNF781 Missense_Mutation p.N274S 0.17 tolerated(0.87) benign(0) TCGA-BR-8286-01 19 39805107 39805107 G A LRFN1 Silent p.P290P 0.74 TCGA-BR-8286-01 19 43523024 43523024 A G PSG11 Missense_Mutation p.F203L 0.05 tolerated(0.08) benign(0.014) TCGA-BR-8286-01 19 48342758 48342758 C A CRX Missense_Mutation p.P145H 0.68 deleterious(0.02) probably_damaging(0.94) TCGA-BR-8286-01 19 53762734 53762734 G T VN1R2 Missense_Mutation p.C369F 0.30 tolerated(0.06) benign(0.011) TCGA-BR-8286-01 19 56235402 56235402 G A NLRP9 Silent p.D701D 0.15 TCGA-BR-8286-01 19 56904885 56904885 C T ZNF582 5'UTR 0.18 TCGA-BR-8286-01 19 57335005 57335005 C T PEG3 Missense_Mutation p.R146Q 0.63 deleterious(0.03) benign(0.026) TCGA-BR-8286-01 19 57646177 57646177 G A ZIM3 3'UTR 0.16 TCGA-BR-8286-01 19 6004219 6004219 T A RFX2 Missense_Mutation p.Q498L 0.59 tolerated(0.06) benign(0.15) TCGA-BR-8286-01 19 9524819 9524819 G A ZNF266 Missense_Mutation p.T261I 0.57 tolerated(0.26) benign(0.017) TCGA-BR-8286-01 1 103355063 103355063 C - COL11A1 Frame_Shift_Del p.G1471Vfs*27 0.23 TCGA-BR-8286-01 1 10336421 10336421 C T KIF1B Missense_Mutation p.A328V 0.25 deleterious(0) probably_damaging(0.935) TCGA-BR-8286-01 1 110944030 110944030 C T LAMTOR5 3'UTR 0.33 TCGA-BR-8286-01 1 149900751 149900751 C T MTMR11 3'UTR 0.20 TCGA-BR-8286-01 1 151497219 151497219 A G CGN Missense_Mutation p.R491G 0.29 deleterious(0) probably_damaging(0.999) TCGA-BR-8286-01 1 152187979 152187979 G A HRNR Silent p.H2042H 0.11 TCGA-BR-8286-01 1 152777707 152777707 C T LCE1C Missense_Mutation p.R83H 0.39 tolerated_low_confidence(0.28) unknown(0) TCGA-BR-8286-01 1 156645073 156645073 G A NES Silent p.V281V 0.16 TCGA-BR-8286-01 1 157804319 157804319 T C CD5L Missense_Mutation p.K199R 0.17 tolerated(0.17) benign(0) TCGA-BR-8286-01 1 157804432 157804432 G A CD5L Silent p.T161T 0.08 TCGA-BR-8286-01 1 158325943 158325943 G A CD1E Intron 0.12 TCGA-BR-8286-01 1 175324675 175324675 A G TNR Silent p.Y1071Y 0.37 TCGA-BR-8286-01 1 176903398 176903398 T C ASTN1 Missense_Mutation p.N854S 0.11 tolerated(1) probably_damaging(0.915) TCGA-BR-8286-01 1 196694307 196694307 G A CFH Missense_Mutation p.D585N 0.26 tolerated(0.14) benign(0.032) TCGA-BR-8286-01 1 228475397 228475397 C T OBSCN Missense_Mutation p.R3612W 0.39 probably_damaging(0.988) TCGA-BR-8286-01 1 233393811 233393811 G C PCNXL2 Silent p.G599G 0.31 TCGA-BR-8286-01 1 248512867 248512867 C T OR14C36 Missense_Mutation p.P264L 0.16 deleterious(0.01) benign(0.006) TCGA-BR-8286-01 1 26586136 26586136 G A CEP85 Missense_Mutation p.R395H 0.32 deleterious(0) probably_damaging(1) TCGA-BR-8286-01 1 85431387 85431387 C A MCOLN2 Missense_Mutation p.A28S 0.26 tolerated(0.64) benign(0.005) TCGA-BR-8286-01 1 889226 889226 C T NOC2L Missense_Mutation p.R275Q 0.41 tolerated(1) benign(0.003) TCGA-BR-8286-01 20 1960952 1960952 T C PDYN 3'UTR 0.04 TCGA-BR-8286-01 21 46602630 46602630 G T ADARB1 Missense_Mutation p.L403F 0.18 tolerated(0.22) benign(0.362) TCGA-BR-8286-01 22 19207439 19207439 G A CLTCL1 Silent p.H958H 0.36 TCGA-BR-8286-01 22 23237753 23237753 C T IGLL5 Missense_Mutation p.A175V 0.39 tolerated_low_confidence(0.29) benign(0.065) TCGA-BR-8286-01 22 30886231 30886231 C A SEC14L4 Missense_Mutation p.V362F 0.15 deleterious(0) probably_damaging(0.985) TCGA-BR-8286-01 22 38620889 38620889 C T TMEM184B Silent p.Q295Q 0.16 TCGA-BR-8286-01 22 46656654 46656654 T C PKDREJ Missense_Mutation p.T856A 0.53 tolerated(0.28) benign(0.036) TCGA-BR-8286-01 22 50302919 50302920 - GTG ALG12 In_Frame_Ins p.T247dup 0.18 TCGA-BR-8286-01 2 11725893 11725893 G A GREB1 Missense_Mutation p.A341T 0.41 tolerated(0.36) benign(0.009) TCGA-BR-8286-01 2 1499847 1499847 A C TPO Missense_Mutation p.N698T 0.41 deleterious(0.03) probably_damaging(0.982) TCGA-BR-8286-01 2 1500483 1500483 G C TPO Missense_Mutation p.E778Q 0.32 tolerated(0.1) benign(0.391) TCGA-BR-8286-01 2 162719565 162719566 - A SLC4A10 Frame_Shift_Ins p.N255Kfs*16 0.36 TCGA-BR-8286-01 2 179452836 179452836 C T TTN Missense_Mutation p.V21100I 0.44 TCGA-BR-8286-01 2 179604777 179604777 G A TTN Silent p.L4395L 0.61 TCGA-BR-8286-01 2 20463105 20463105 G A PUM2 Missense_Mutation p.P692S 0.18 tolerated(0.51) benign(0.009) TCGA-BR-8286-01 2 215812220 215812220 T A ABCA12 Missense_Mutation p.M2389L 0.71 tolerated(0.17) benign(0.003) TCGA-BR-8286-01 2 220164507 220164507 G A PTPRN Missense_Mutation p.P480S 0.07 tolerated(0.1) probably_damaging(0.988) TCGA-BR-8286-01 2 241726728 241726728 G A KIF1A Silent p.C123C 0.52 TCGA-BR-8286-01 2 29551215 29551215 C T ALK Splice_Site p.X472_splice 0.25 TCGA-BR-8286-01 2 43800003 43800003 G A THADA Missense_Mutation p.L620F 0.17 deleterious(0.02) possibly_damaging(0.688) TCGA-BR-8286-01 2 54851961 54851961 A C SPTBN1 Missense_Mutation p.K401N 0.24 deleterious(0) possibly_damaging(0.633) TCGA-BR-8286-01 2 67632028 67632028 G T ETAA1 Missense_Mutation p.M738I 0.22 tolerated(0.74) benign(0.001) TCGA-BR-8286-01 2 96780509 96780509 C T ADRA2B 3'UTR 0.30 TCGA-BR-8286-01 2 99182628 99182628 G T INPP4A Nonsense_Mutation p.E811* 0.19 TCGA-BR-8286-01 3 10018730 10018730 A G EMC3 Missense_Mutation p.F73S 0.06 deleterious(0.01) probably_damaging(0.977) TCGA-BR-8286-01 3 100951812 100951812 A T IMPG2 Missense_Mutation p.F1016I 0.17 deleterious(0) probably_damaging(0.995) TCGA-BR-8286-01 3 107492475 107492475 T C BBX Missense_Mutation p.V636A 0.54 deleterious(0) probably_damaging(0.986) TCGA-BR-8286-01 3 136057238 136057238 A G STAG1 Missense_Mutation p.S1243P 0.27 tolerated_low_confidence(1) benign(0.003) TCGA-BR-8286-01 3 138739227 138739227 C T PRR23B Missense_Mutation p.G93S 0.40 deleterious(0.04) benign(0.355) TCGA-BR-8286-01 3 151163065 151163065 A G IGSF10 Silent p.S1568S 0.39 TCGA-BR-8286-01 3 38047335 38047335 G A VILL Nonsense_Mutation p.W668* 0.48 TCGA-BR-8286-01 3 38888324 38888324 T G SCN11A Missense_Mutation p.K1746T 0.22 deleterious(0.02) benign(0.11) TCGA-BR-8286-01 3 46784042 46784042 A C PRSS45 Missense_Mutation p.V162G 0.22 deleterious(0) possibly_damaging(0.853) TCGA-BR-8286-01 3 49055175 49055175 C T DALRD3 Missense_Mutation p.E197K 0.13 tolerated(0.66) benign(0.007) TCGA-BR-8286-01 3 53835248 53835248 C T CACNA1D Missense_Mutation p.S1755L 0.10 deleterious_low_confidence(0.03) benign(0.023) TCGA-BR-8286-01 3 93768349 93768349 C T ARL13B Missense_Mutation p.P375L 0.12 deleterious_low_confidence(0.05) possibly_damaging(0.755) TCGA-BR-8286-01 3 97868965 97868965 T C OR5H14 Silent p.L246L 0.27 TCGA-BR-8286-01 4 40438548 40438548 C A RBM47 Missense_Mutation p.G414W 0.56 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-BR-8286-01 4 76861383 76861383 C T NAAA Intron 0.59 TCGA-BR-8286-01 5 112228594 112228594 C T ZRSR1 Missense_Mutation p.R420W 0.16 deleterious(0.01) benign(0.428) TCGA-BR-8286-01 5 115346505 115346505 A G AQPEP Missense_Mutation p.I721V 0.65 tolerated(0.52) benign(0.021) TCGA-BR-8286-01 5 13717530 13717530 T G DNAH5 Missense_Mutation p.K4200T 0.11 possibly_damaging(0.728) TCGA-BR-8286-01 5 13824440 13824440 A C DNAH5 Silent p.V2149V 0.12 TCGA-BR-8286-01 5 21751873 21751873 C T CDH12 Silent p.E786E 0.34 TCGA-BR-8286-01 5 31313471 31313471 G A CDH6 Missense_Mutation p.D434N 0.37 tolerated(0.39) benign(0.006) TCGA-BR-8286-01 5 86564739 86564740 CT - RASA1 Frame_Shift_Del p.L159Gfs*20 0.40 TCGA-BR-8286-01 5 94956706 94956706 G A GPR150 Missense_Mutation p.A243T 0.67 tolerated(0.15) probably_damaging(0.998) TCGA-BR-8286-01 6 127837556 127837556 A G SOGA3 Silent p.N68N 0.18 TCGA-BR-8286-01 6 32714123 32714123 C A HLA-DQA2 Silent p.I240I 0.29 TCGA-BR-8286-01 6 32905013 32905013 G A HLA-DMB Silent p.Y186Y 0.16 TCGA-BR-8286-01 6 44360401 44360401 T G CDC5L Intron 0.40 TCGA-BR-8286-01 6 5999379 5999379 C G NRN1 Missense_Mutation p.A87P 0.30 deleterious(0.01) probably_damaging(0.956) TCGA-BR-8286-01 6 87969804 87969804 G A ZNF292 Missense_Mutation p.E2153K 0.27 deleterious(0.04) probably_damaging(0.968) TCGA-BR-8286-01 7 100687003 100687003 C G MUC17 Silent p.T4102T 0.24 TCGA-BR-8286-01 7 108112767 108112767 C T PNPLA8 3'UTR 0.43 TCGA-BR-8286-01 7 117864908 117864908 G T ANKRD7 Missense_Mutation p.W8C 0.15 tolerated(0.12) benign(0.029) TCGA-BR-8286-01 7 144463012 144463012 G A TPK1 Nonsense_Mutation p.Q26* 0.15 TCGA-BR-8286-01 7 157370783 157370783 G A PTPRN2 Missense_Mutation p.A849V 0.41 tolerated(1) benign(0.007) TCGA-BR-8286-01 7 158448112 158448112 C T NCAPG2 Silent p.G808G 0.41 TCGA-BR-8286-01 7 30890083 30890083 T C FAM188B Missense_Mutation p.S487P 0.29 deleterious(0) possibly_damaging(0.84) TCGA-BR-8286-01 7 40132389 40132389 A G CDK13 Missense_Mutation p.T1081A 0.17 tolerated(0.53) benign(0.292) TCGA-BR-8286-01 7 42005605 42005605 C T GLI3 Silent p.P1022P 0.34 TCGA-BR-8286-01 7 42085089 42085089 C T GLI3 Silent p.Q240Q 0.06 TCGA-BR-8286-01 7 45931573 45931573 G T IGFBP1 Missense_Mutation p.A188S 0.33 tolerated(0.12) benign(0.305) TCGA-BR-8286-01 7 82582874 82582874 T G PCLO Silent p.T2465T 0.44 TCGA-BR-8286-01 8 104068162 104068162 C T ATP6V1C1 Silent p.S213S 0.68 TCGA-BR-8286-01 8 113585844 113585844 A T CSMD3 Missense_Mutation p.F1310I 0.39 deleterious(0) benign(0.261) TCGA-BR-8286-01 8 143624776 143624776 C T BAI1 Missense_Mutation p.R1476W 0.50 deleterious(0) probably_damaging(0.991) TCGA-BR-8286-01 8 143961157 143961157 C T CYP11B1 Missense_Mutation p.G25S 0.38 tolerated(0.09) benign(0.126) TCGA-BR-8286-01 8 145512860 145512860 G A BOP1 Silent p.D75D 0.44 TCGA-BR-8286-01 8 68930087 68930087 T G PREX2 Missense_Mutation p.L50V 0.31 deleterious(0.04) benign(0.279) TCGA-BR-8286-01 9 100890891 100890891 G A CORO2A Missense_Mutation p.R360W 0.10 deleterious(0.02) probably_damaging(0.999) TCGA-BR-8286-01 9 113261433 113261433 C T SVEP1 Silent p.T523T 0.23 TCGA-BR-8286-01 9 115959233 115959233 C A FKBP15 Silent p.V281V 0.38 TCGA-BR-8286-01 9 120476848 120476848 C G TLR4 Silent p.A814A 0.15 TCGA-BR-8286-01 9 130249962 130249962 G A LRSAM1 Missense_Mutation p.E423K 0.25 tolerated(0.12) benign(0.012) TCGA-BR-8286-01 9 140040199 140040199 C T GRIN1 Missense_Mutation p.R139C 0.17 deleterious(0.02) benign(0.021) TCGA-BR-8286-01 9 16436012 16436012 T C BNC2 Missense_Mutation p.E727G 0.09 tolerated(0.11) benign(0.078) TCGA-BR-8286-01 9 18680489 18680489 A C ADAMTSL1 Missense_Mutation p.K439T 0.05 tolerated(0.15) benign(0.083) TCGA-BR-8286-01 9 8404618 8404618 A G PTPRD Silent p.L1377L 0.26 TCGA-BR-8286-01 X 117043899 117043899 A C KLHL13 Missense_Mutation p.L247R 0.34 deleterious(0) probably_damaging(1) TCGA-BR-8286-01 X 149639247 149639247 T C MAMLD1 Silent p.L443L 0.06 TCGA-BR-8286-01 X 152825250 152825250 C T ATP2B3 Silent p.L897L 0.33 TCGA-BR-8286-01 X 19947942 19947942 G A CXorf23 Silent p.I660I 0.05 TCGA-BR-8286-01 X 3261861 3261861 G A MXRA5 Missense_Mutation p.A5V 0.73 tolerated(0.16) benign(0.019) TCGA-BR-8286-01 X 34962853 34962853 A G FAM47B Silent p.K635K 0.33 TCGA-BR-8286-01 X 48762575 48762575 G A SLC35A2 Missense_Mutation p.A204V 0.89 tolerated(1) benign(0.006) TCGA-BR-8286-01 X 49127037 49127037 C T PPP1R3F Silent p.D235D 0.47 TCGA-BR-8286-01 X 64744084 64744084 G A LAS1L Silent p.P384P 0.45 TCGA-BR-8289-01 10 101476185 101476185 A G COX15 Missense_Mutation p.Y341H 0.25 deleterious(0.02) probably_damaging(0.968) TCGA-BR-8289-01 10 108434807 108434807 G A SORCS1 Missense_Mutation p.T647I 0.27 deleterious(0.01) possibly_damaging(0.66) TCGA-BR-8289-01 10 112769019 112769019 C G SHOC2 Nonsense_Mutation p.S433* 0.38 TCGA-BR-8289-01 10 11505655 11505655 C T USP6NL Silent p.T441T 0.15 TCGA-BR-8289-01 10 123239292 123239292 T C FGFR2 3'Flank 0.20 TCGA-BR-8289-01 10 129202588 129202589 - A DOCK1 Frame_Shift_Ins p.Q1321Tfs*6 0.33 TCGA-BR-8289-01 10 16970303 16970303 C A CUBN Splice_Site p.X2042_splice 0.24 TCGA-BR-8289-01 10 28233225 28233225 C T ARMC4 Missense_Mutation p.E557K 0.09 deleterious(0.01) probably_damaging(0.959) TCGA-BR-8289-01 10 37508309 37508309 C T ANKRD30A Silent p.F1167F 0.40 TCGA-BR-8289-01 10 37508493 37508493 C A ANKRD30A Missense_Mutation p.Q1229K 0.31 deleterious(0) benign(0.292) TCGA-BR-8289-01 10 52588038 52588038 C A A1CF Nonsense_Mutation p.G216* 0.11 TCGA-BR-8289-01 10 5446770 5446770 G A TUBAL3 5'UTR 0.19 TCGA-BR-8289-01 10 55590915 55590915 T C PCDH15 Intron 0.19 TCGA-BR-8289-01 10 73461941 73461941 C A CDH23 Missense_Mutation p.R446S 0.22 tolerated(0.1) benign(0.168) TCGA-BR-8289-01 10 74804758 74804758 G T P4HA1 Missense_Mutation p.H377N 0.20 tolerated(1) benign(0.014) TCGA-BR-8289-01 10 75003051 75003052 AC - DNAJC9 3'UTR 0.16 TCGA-BR-8289-01 10 83635467 83635467 C T NRG3 Missense_Mutation p.A124V 0.18 tolerated(0.36) benign(0.157) TCGA-BR-8289-01 10 84718767 84718767 T C NRG3 Missense_Mutation p.L407P 0.15 deleterious(0.01) probably_damaging(1) TCGA-BR-8289-01 11 12316167 12316167 T A MICALCL Missense_Mutation p.F397I 0.17 tolerated(0.12) benign(0.056) TCGA-BR-8289-01 11 51515532 51515532 T C OR4C46 Missense_Mutation p.L84P 0.61 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-BR-8289-01 11 55322128 55322128 T C OR4C15 Silent p.L116L 0.24 TCGA-BR-8289-01 11 5536964 5536964 T G UBQLNL Missense_Mutation p.Q236H 0.33 deleterious(0) probably_damaging(0.996) TCGA-BR-8289-01 11 55563500 55563500 G A OR5D14 Missense_Mutation p.G157S 0.20 tolerated(0.18) benign(0.006) TCGA-BR-8289-01 11 55999981 55999981 A G OR5T2 Silent p.S227S 0.24 TCGA-BR-8289-01 11 58602155 58602155 A C GLYATL2 Missense_Mutation p.L211R 0.23 deleterious(0.01) benign(0.304) TCGA-BR-8289-01 11 6008074 6008074 A G OR52L1 Silent p.S29S 0.35 TCGA-BR-8289-01 11 78381433 78381433 G A TENM4 Missense_Mutation p.A1986V 0.21 deleterious(0.03) probably_damaging(0.969) TCGA-BR-8289-01 11 95574830 95574830 G A MTMR2 Missense_Mutation p.S477L 0.38 deleterious(0) probably_damaging(0.998) TCGA-BR-8289-01 12 106895167 106895167 A T POLR3B Silent p.L1017L 0.22 TCGA-BR-8289-01 12 115114134 115114134 C - TBX3 Frame_Shift_Del p.T362Hfs*270 0.30 TCGA-BR-8289-01 12 120110200 120110201 - G PRKAB1 Frame_Shift_Ins p.G88Rfs*15 0.29 TCGA-BR-8289-01 12 122958719 122958719 G A ZCCHC8 Silent p.V483V 0.25 TCGA-BR-8289-01 12 129569124 129569124 G A TMEM132D Missense_Mutation p.R523W 0.34 deleterious(0) probably_damaging(0.982) TCGA-BR-8289-01 12 52964498 52964498 G A KRT74 Silent p.I321I 0.31 TCGA-BR-8289-01 12 85408248 85408248 C A TSPAN19 3'UTR 0.40 TCGA-BR-8289-01 12 91371910 91371910 G A EPYC Nonsense_Mutation p.Q99* 0.21 TCGA-BR-8289-01 13 32798522 32798522 G T FRY Missense_Mutation p.R1639M 0.27 deleterious(0) probably_damaging(0.999) TCGA-BR-8289-01 13 43148629 43148629 G A TNFSF11 Missense_Mutation p.V64I 0.16 tolerated(0.22) benign(0.003) TCGA-BR-8289-01 13 52603712 52603712 G C UTP14C Missense_Mutation p.G258R 0.09 tolerated(0.07) benign(0.098) TCGA-BR-8289-01 14 105414728 105414728 G T AHNAK2 Missense_Mutation p.L2354I 0.31 benign(0.023) TCGA-BR-8289-01 14 106725650 106725650 T C IGHV3-23 Missense_Mutation p.E2G 0.57 tolerated_low_confidence(0.12) benign(0.011) TCGA-BR-8289-01 14 20388855 20388855 C A OR4K5 Missense_Mutation p.F30L 0.12 tolerated(0.16) benign(0.008) TCGA-BR-8289-01 14 20444306 20444306 A C OR4K15 Missense_Mutation p.K210T 0.15 deleterious(0) benign(0.182) TCGA-BR-8289-01 14 21955783 21955783 C T TOX4 Silent p.D83D 0.20 TCGA-BR-8289-01 14 22265968 22265968 C A TRAV8-1 Missense_Mutation p.A84D 0.12 deleterious(0) probably_damaging(0.988) TCGA-BR-8289-01 14 22928134 22928134 T G TRDJ3 Missense_Mutation p.L16R 0.24 unknown(0) TCGA-BR-8289-01 14 23511393 23511393 A G PSMB11 5'UTR 0.20 TCGA-BR-8289-01 14 30093429 30093429 T A PRKD1 Nonsense_Mutation p.K612* 0.13 TCGA-BR-8289-01 14 58955445 58955445 G A KIAA0586 Missense_Mutation p.A1265T 0.55 tolerated(0.29) benign(0.023) TCGA-BR-8289-01 14 61190154 61190154 T C SIX4 Silent p.K213K 0.59 TCGA-BR-8289-01 14 64596767 64596767 A G SYNE2 Missense_Mutation p.D4714G 0.19 possibly_damaging(0.9) TCGA-BR-8289-01 14 70925003 70925003 C A ADAM21 Missense_Mutation p.Q263K 0.43 tolerated(0.36) benign(0.006) TCGA-BR-8289-01 14 94044270 94044270 G A UNC79 Missense_Mutation p.R588Q 0.15 tolerated(0.17) benign(0.186) TCGA-BR-8289-01 15 101528929 101528929 C T LRRK1 Missense_Mutation p.T175M 0.30 deleterious(0.04) benign(0.149) TCGA-BR-8289-01 15 44036757 44036757 C T PDIA3 5'Flank 0.16 TCGA-BR-8289-01 15 48559802 48559802 G A SLC12A1 Silent p.A733A 0.22 TCGA-BR-8289-01 15 48797233 48797233 C T FBN1 Missense_Mutation p.R650H 0.15 possibly_damaging(0.748) TCGA-BR-8289-01 15 49308888 49308888 G A SECISBP2L Missense_Mutation p.S477L 0.32 deleterious(0.03) benign(0.013) TCGA-BR-8289-01 15 52613705 52613705 C T MYO5A Missense_Mutation p.G1576D 0.19 tolerated(0.33) benign(0.071) TCGA-BR-8289-01 15 65739344 65739344 T A DPP8 Missense_Mutation p.I859F 0.35 deleterious(0) possibly_damaging(0.902) TCGA-BR-8289-01 15 88680715 88680715 T C NTRK3 Missense_Mutation p.K181R 0.25 tolerated(0.41) benign(0.001) TCGA-BR-8289-01 15 90616324 90616324 G A ZNF710 Missense_Mutation p.E494K 0.21 tolerated(0.29) probably_damaging(0.993) TCGA-BR-8289-01 16 26147533 26147533 A C HS3ST4 Missense_Mutation p.Q445H 0.11 tolerated(0.37) benign(0.16) TCGA-BR-8289-01 16 31089848 31089848 G A ZNF646 Missense_Mutation p.E735K 0.18 tolerated(0.34) benign(0.004) TCGA-BR-8289-01 16 58633182 58633182 T G CNOT1 Missense_Mutation p.L20F 0.35 deleterious(0) probably_damaging(0.998) TCGA-BR-8289-01 16 67688536 67688536 T A RLTPR Missense_Mutation p.Y1175N 0.21 tolerated(0.17) probably_damaging(0.997) TCGA-BR-8289-01 16 89351933 89351933 G C ANKRD11 Silent p.A339A 0.16 TCGA-BR-8289-01 17 27047880 27047880 C G RPL23A Missense_Mutation p.P61A 0.36 tolerated(0.06) benign(0.232) TCGA-BR-8289-01 17 37886535 37886535 G T MIEN1 Nonsense_Mutation p.C33* 0.08 TCGA-BR-8289-01 17 73820418 73820418 G A UNK Missense_Mutation p.A785T 0.72 tolerated(0.39) benign(0.003) TCGA-BR-8289-01 17 73997514 73997514 T C CDK3 Missense_Mutation p.M3T 0.83 tolerated(0.34) benign(0) TCGA-BR-8289-01 17 75196731 75196731 G T SEC14L1 Nonsense_Mutation p.G329* 0.31 TCGA-BR-8289-01 17 75208180 75208180 C T SEC14L1 Missense_Mutation p.P587L 0.31 tolerated(0.1) benign(0.025) TCGA-BR-8289-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.32 tolerated(0.13) possibly_damaging(0.631) TCGA-BR-8289-01 18 47402144 47402144 C T MYO5B Silent p.Q1150Q 0.42 TCGA-BR-8289-01 18 5398038 5398038 A C EPB41L3 Silent p.T818T 0.31 TCGA-BR-8289-01 19 12184935 12184935 A C ZNF844 Missense_Mutation p.E31D 0.48 tolerated(1) possibly_damaging(0.874) TCGA-BR-8289-01 19 14517953 14517953 G A CD97 Missense_Mutation p.R763Q 0.16 tolerated(0.57) benign(0.017) TCGA-BR-8289-01 19 20116811 20116811 T G ZNF682 3'UTR 0.17 TCGA-BR-8289-01 19 20728483 20728483 T C ZNF737 Missense_Mutation p.I176V 0.34 deleterious(0.02) benign(0.013) TCGA-BR-8289-01 19 30165082 30165082 G A PLEKHF1 Silent p.S112S 0.08 TCGA-BR-8289-01 19 33696647 33696647 C T LRP3 Missense_Mutation p.T324M 0.30 tolerated(0.05) probably_damaging(0.999) TCGA-BR-8289-01 19 36386962 36386962 G A NFKBID Missense_Mutation p.R176W 0.33 deleterious(0.01) possibly_damaging(0.806) TCGA-BR-8289-01 19 38229531 38229531 A G ZNF573 Silent p.S620S 0.33 TCGA-BR-8289-01 19 41384726 41384726 C T CYP2A7 Missense_Mutation p.R257H 0.19 tolerated(0.08) benign(0.005) TCGA-BR-8289-01 19 45801008 45801008 G A MARK4 Missense_Mutation p.R558H 0.43 deleterious(0.04) benign(0.046) TCGA-BR-8289-01 19 49913073 49913073 G A CCDC155 Missense_Mutation p.V404I 0.42 tolerated_low_confidence(0.14) benign(0.009) TCGA-BR-8289-01 19 52722958 52722958 G T PPP2R1A Silent p.R381R 0.35 TCGA-BR-8289-01 19 55597230 55597230 A G EPS8L1 Silent p.E469E 0.19 TCGA-BR-8289-01 19 57132977 57132977 G A ZNF71 Missense_Mutation p.G108S 0.20 deleterious(0.02) benign(0.001) TCGA-BR-8289-01 19 57333083 57333083 T G PEG3 Missense_Mutation p.K202T 0.14 tolerated(0.05) benign(0.225) TCGA-BR-8289-01 19 57803649 57803649 C T ZNF460 3'UTR 0.19 TCGA-BR-8289-01 19 58420576 58420576 C T ZNF417 Missense_Mutation p.C357Y 0.29 deleterious(0) probably_damaging(1) TCGA-BR-8289-01 19 6475579 6475579 G A DENND1C Silent p.A281A 0.30 TCGA-BR-8289-01 19 6707204 6707204 G A C3 Missense_Mutation p.R710W 0.29 deleterious(0) probably_damaging(1) TCGA-BR-8289-01 19 9061337 9061337 A C MUC16 Silent p.T8703T 0.35 TCGA-BR-8289-01 19 9061989 9061989 A C MUC16 Missense_Mutation p.I8486S 0.29 unknown(0) TCGA-BR-8289-01 1 143912284 143912284 G C FAM72D Missense_Mutation p.N4K 0.08 tolerated_low_confidence(0.11) benign(0.029) TCGA-BR-8289-01 1 150233945 150233945 T G CA14 Missense_Mutation p.V55G 0.12 deleterious(0) probably_damaging(0.916) TCGA-BR-8289-01 1 151143000 151143000 T G TMOD4 Missense_Mutation p.E337A 0.06 deleterious(0) possibly_damaging(0.601) TCGA-BR-8289-01 1 152129286 152129286 T G RPTN Silent p.R97R 0.09 TCGA-BR-8289-01 1 152538244 152538244 C A LCE3E 3'UTR 0.70 TCGA-BR-8289-01 1 152785235 152785235 T A LCE1B Missense_Mutation p.C105S 0.26 tolerated_low_confidence(0.39) unknown(0) TCGA-BR-8289-01 1 154295731 154295731 T C AQP10 Missense_Mutation p.Y129H 0.21 tolerated(0.09) possibly_damaging(0.737) TCGA-BR-8289-01 1 155170258 155170258 G A THBS3 Silent p.N564N 0.64 TCGA-BR-8289-01 1 158986333 158986333 A C IFI16 Missense_Mutation p.K131T 0.09 tolerated(0.99) benign(0.078) TCGA-BR-8289-01 1 159284068 159284068 A G OR10J3 Missense_Mutation p.C128R 0.19 deleterious(0) probably_damaging(0.996) TCGA-BR-8289-01 1 169100726 169100726 A C ATP1B1 Missense_Mutation p.N282T 0.22 tolerated(0.09) probably_damaging(0.998) TCGA-BR-8289-01 1 173556952 173556953 - A SLC9C2 Frame_Shift_Ins p.L125Ffs*3 0.14 TCGA-BR-8289-01 1 176668266 176668266 C G PAPPA2 Missense_Mutation p.P926R 0.19 deleterious(0) probably_damaging(0.986) TCGA-BR-8289-01 1 185966642 185966642 C A HMCN1 Missense_Mutation p.P1287Q 0.19 probably_damaging(0.999) TCGA-BR-8289-01 1 21143964 21143964 G A EIF4G3 Missense_Mutation p.A1429V 0.20 tolerated(0.21) benign(0.041) TCGA-BR-8289-01 1 22913108 22913108 C T EPHA8 Missense_Mutation p.P320L 0.16 tolerated(0.06) benign(0.004) TCGA-BR-8289-01 1 237580424 237580424 G A RYR2 Splice_Site p.X283_splice 0.67 TCGA-BR-8289-01 1 33321539 33321539 G A S100PBP Missense_Mutation p.R376Q 0.37 tolerated(0.06) possibly_damaging(0.795) TCGA-BR-8289-01 1 36028833 36028833 C T NCDN Silent p.T472T 0.33 TCGA-BR-8289-01 1 43205530 43205530 A C CLDN19 Missense_Mutation p.S69A 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-BR-8289-01 1 53712697 53712697 A G LRP8 Missense_Mutation p.L962P 0.28 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BR-8289-01 1 98186479 98186479 A C DPYD Intron 0.36 TCGA-BR-8289-01 20 18407803 18407803 C A DZANK1 Nonsense_Mutation p.E288* 0.43 TCGA-BR-8289-01 20 20232238 20232238 G T C20orf26 Splice_Site p.X720_splice 0.12 TCGA-BR-8289-01 20 30671801 30671801 C T HCK Nonsense_Mutation p.R213* 0.23 TCGA-BR-8289-01 20 3652266 3652266 C A ADAM33 Missense_Mutation p.G623C 0.16 deleterious(0) probably_damaging(0.998) TCGA-BR-8289-01 20 37580424 37580424 C G FAM83D Missense_Mutation p.T370S 0.10 tolerated(0.17) benign(0.133) TCGA-BR-8289-01 20 44587884 44587884 T G ZNF335 Missense_Mutation p.S737R 0.24 tolerated(0.08) benign(0.001) TCGA-BR-8289-01 21 10862949 10862949 A C IGHV1OR21-1 Missense_Mutation p.K82T 0.16 deleterious(0.04) benign(0.182) TCGA-BR-8289-01 21 10944719 10944719 A C TPTE Missense_Mutation p.V172G 0.16 deleterious(0) benign(0.445) TCGA-BR-8289-01 21 31744089 31744089 C T KRTAP13-2 Missense_Mutation p.R148H 0.61 tolerated(0.97) benign(0.004) TCGA-BR-8289-01 21 47776997 47776997 C T PCNT Missense_Mutation p.S682L 0.44 possibly_damaging(0.602) TCGA-BR-8289-01 22 22735661 22735661 T A IGLV1-44 Missense_Mutation p.S100T 0.27 tolerated_low_confidence(0.91) benign(0.005) TCGA-BR-8289-01 22 24891382 24891382 C T UPB1 Missense_Mutation p.A4V 0.34 tolerated_low_confidence(0.38) benign(0.066) TCGA-BR-8289-01 22 39387489 39387489 A G APOBEC3B Silent p.E292E 0.18 TCGA-BR-8289-01 2 113088967 113088967 T C ZC3H6 Silent p.D824D 0.36 TCGA-BR-8289-01 2 132240311 132240311 G A TUBA3D Missense_Mutation p.E415K 0.08 deleterious_low_confidence(0) benign(0.295) TCGA-BR-8289-01 2 133540288 133540288 T G NCKAP5 Missense_Mutation p.S1366R 0.20 deleterious(0.05) benign(0.031) TCGA-BR-8289-01 2 141208232 141208232 T G LRP1B Splice_Site p.X3322_splice 0.39 TCGA-BR-8289-01 2 1652664 1652664 T C PXDN Missense_Mutation p.E963G 0.89 tolerated(0.13) benign(0.169) TCGA-BR-8289-01 2 165952151 165952151 A C SCN3A Missense_Mutation p.L1434R 0.23 tolerated(0.07) benign(0.197) TCGA-BR-8289-01 2 179428834 179428834 G T TTN Missense_Mutation p.T27342N 0.24 TCGA-BR-8289-01 2 197656104 197656104 T G GTF3C3 Missense_Mutation p.E164D 0.36 tolerated(0.31) benign(0.005) TCGA-BR-8289-01 2 201757042 201757042 C T NIF3L1 Missense_Mutation p.P126S 0.33 deleterious(0) probably_damaging(1) TCGA-BR-8289-01 2 207171207 207171207 A C ZDBF2 Missense_Mutation p.K652T 0.19 deleterious(0.01) possibly_damaging(0.775) TCGA-BR-8289-01 2 207171930 207171930 A G ZDBF2 Missense_Mutation p.K893R 0.27 tolerated(0.23) possibly_damaging(0.678) TCGA-BR-8289-01 2 207172948 207172948 A C ZDBF2 Missense_Mutation p.E1232D 0.23 tolerated(0.06) benign(0.217) TCGA-BR-8289-01 2 216238071 216238071 T - FN1 Frame_Shift_Del p.E2074Gfs*3 0.28 TCGA-BR-8289-01 2 224847456 224847456 T G SERPINE2 Missense_Mutation p.K321N 0.27 tolerated(0.08) possibly_damaging(0.639) TCGA-BR-8289-01 2 225659637 225659637 T C DOCK10 Missense_Mutation p.S1705G 0.29 deleterious(0) probably_damaging(0.928) TCGA-BR-8289-01 2 228135486 228135486 G A COL4A3 Missense_Mutation p.G526S 0.16 probably_damaging(0.999) TCGA-BR-8289-01 2 231931790 231931790 A T PSMD1 Nonsense_Mutation p.R159* 0.48 TCGA-BR-8289-01 2 24303724 24303726 TCT - TP53I3 In_Frame_Del p.E195del 0.12 TCGA-BR-8289-01 3 113005559 113005559 G C BOC Missense_Mutation p.E1065D 0.07 tolerated_low_confidence(0.06) benign(0.029) TCGA-BR-8289-01 3 140280993 140280993 A C CLSTN2 Missense_Mutation p.E685D 0.24 tolerated(0.62) benign(0.024) TCGA-BR-8289-01 3 151166629 151166629 C G IGSF10 Missense_Mutation p.L380F 0.24 deleterious(0.04) possibly_damaging(0.453) TCGA-BR-8289-01 3 153220203 153220203 C T C3orf79 Nonsense_Mutation p.Q79* 0.12 TCGA-BR-8289-01 3 158315949 158315949 G A MLF1 Silent p.P151P 0.33 TCGA-BR-8289-01 3 158364655 158364655 G A GFM1 Missense_Mutation p.R164H 0.56 deleterious(0) probably_damaging(0.999) TCGA-BR-8289-01 3 164905717 164905717 C G SLITRK3 Missense_Mutation p.E968Q 0.09 deleterious(0.01) possibly_damaging(0.815) TCGA-BR-8289-01 3 47047069 47047069 G A NBEAL2 Silent p.P2217P 0.38 TCGA-BR-8289-01 3 49136421 49136421 G A QARS Missense_Mutation p.S587F 0.26 deleterious(0.05) benign(0.126) TCGA-BR-8289-01 3 56173555 56173555 A G ERC2 Silent p.A485A 0.28 TCGA-BR-8289-01 3 63645500 63645500 C G SNTN Missense_Mutation p.A82G 0.24 deleterious(0.01) possibly_damaging(0.897) TCGA-BR-8289-01 3 78680440 78680440 T A ROBO1 Missense_Mutation p.K1166M 0.27 deleterious(0) possibly_damaging(0.564) TCGA-BR-8289-01 4 38696529 38696529 T C KLF3 Splice_Site p.X286_splice 0.49 TCGA-BR-8289-01 4 46307630 46307630 G T GABRA2 Missense_Mutation p.L220M 0.35 deleterious(0) probably_damaging(0.988) TCGA-BR-8289-01 4 46930536 46930536 A C GABRA4 Silent p.T457T 0.50 TCGA-BR-8289-01 4 6710983 6710983 T C MRFAP1L1 Missense_Mutation p.E125G 0.25 tolerated(0.11) possibly_damaging(0.859) TCGA-BR-8289-01 4 73280572 73280572 T G ADAMTS3 Missense_Mutation p.E207D 0.41 tolerated(0.36) benign(0.004) TCGA-BR-8289-01 4 82090920 82090920 T C PRKG2 Missense_Mutation p.I249V 0.37 tolerated(1) benign(0.003) TCGA-BR-8289-01 5 102432413 102432413 T G GIN1 Missense_Mutation p.N376H 0.13 deleterious(0.01) probably_damaging(0.984) TCGA-BR-8289-01 5 111541193 111541193 T C EPB41L4A Missense_Mutation p.K396R 0.21 tolerated(0.48) benign(0.253) TCGA-BR-8289-01 5 128448780 128448780 A C ISOC1 3'UTR 0.25 TCGA-BR-8289-01 5 128448781 128448781 C T ISOC1 3'UTR 0.26 TCGA-BR-8289-01 5 140237119 140237119 C T PCDHA10 Missense_Mutation p.R496W 0.19 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BR-8289-01 5 140559406 140559406 G A PCDHB8 Silent p.S597S 0.17 TCGA-BR-8289-01 5 140742086 140742086 C G PCDHGB2 Missense_Mutation p.A795G 0.08 tolerated(0.44) benign(0) TCGA-BR-8289-01 5 161113276 161113276 T G GABRA6 Missense_Mutation p.F27V 0.17 tolerated(0.55) benign(0.022) TCGA-BR-8289-01 5 169673139 169673139 C A C5orf58 3'UTR 0.21 TCGA-BR-8289-01 5 176765499 176765499 G A LMAN2 Silent p.R141R 0.50 TCGA-BR-8289-01 5 178392185 178392185 G A ZNF454 Silent p.T260T 0.24 TCGA-BR-8289-01 5 21755799 21755799 C T CDH12 Missense_Mutation p.G596S 0.23 deleterious(0.03) probably_damaging(0.951) TCGA-BR-8289-01 5 24491771 24491771 G A CDH10 Missense_Mutation p.S597F 0.14 deleterious(0.04) probably_damaging(0.962) TCGA-BR-8289-01 5 26988365 26988365 C T CDH9 Missense_Mutation p.E26K 0.32 tolerated(0.93) benign(0) TCGA-BR-8289-01 5 5464018 5464018 A C KIAA0947 Missense_Mutation p.Q1524P 0.56 deleterious(0.02) probably_damaging(0.917) TCGA-BR-8289-01 5 65073295 65073295 A G NLN Silent p.R164R 0.36 TCGA-BR-8289-01 5 77334987 77334987 C G AP3B1 Missense_Mutation p.D897H 0.23 tolerated(0.1) possibly_damaging(0.861) TCGA-BR-8289-01 5 89979689 89979689 A C GPR98 Missense_Mutation p.K1984T 0.29 probably_damaging(0.966) TCGA-BR-8289-01 6 100010763 100010763 G C CCNC Missense_Mutation p.L32V 0.15 tolerated(0.1) benign(0.266) TCGA-BR-8289-01 6 112671505 112671505 C A RFPL4B Missense_Mutation p.P199T 0.31 deleterious(0.01) probably_damaging(0.953) TCGA-BR-8289-01 6 127768551 127768551 T G KIAA0408 Missense_Mutation p.S305R 0.10 tolerated(0.08) benign(0.391) TCGA-BR-8289-01 6 136596730 136596730 T C BCLAF1 Missense_Mutation p.S598G 0.08 tolerated(0.33) benign(0.007) TCGA-BR-8289-01 6 152651701 152651701 C A SYNE1 Nonsense_Mutation p.E4707* 0.26 TCGA-BR-8289-01 6 17794587 17794587 G T KIF13A Missense_Mutation p.Q1039K 0.53 deleterious(0.04) benign(0.423) TCGA-BR-8289-01 6 27858243 27858243 G C HIST1H3J Missense_Mutation p.L110V 0.30 deleterious_low_confidence(0) probably_damaging(0.97) TCGA-BR-8289-01 6 31748259 31748259 G A VARS Missense_Mutation p.R962C 0.17 tolerated(0.18) possibly_damaging(0.676) TCGA-BR-8289-01 6 35478785 35478785 C A TULP1 Nonsense_Mutation p.E118* 0.14 TCGA-BR-8289-01 6 46657864 46657864 A G TDRD6 Missense_Mutation p.K667E 0.28 tolerated(0.46) benign(0.316) TCGA-BR-8289-01 6 74161872 74161872 T C MB21D1 Silent p.R11R 0.16 TCGA-BR-8289-01 6 75833720 75833720 A C COL12A1 Missense_Mutation p.V2272G 0.13 possibly_damaging(0.854) TCGA-BR-8289-01 6 84894937 84894937 G A KIAA1009 Missense_Mutation p.S544L 0.42 tolerated(0.07) benign(0.337) TCGA-BR-8289-01 6 97599657 97599657 A G MMS22L Missense_Mutation p.S1158P 0.11 tolerated(0.15) possibly_damaging(0.504) TCGA-BR-8289-01 7 100457773 100457773 C T SLC12A9 Silent p.G379G 0.27 TCGA-BR-8289-01 7 103338449 103338449 T A RELN Missense_Mutation p.N332Y 0.39 tolerated(1) benign(0.001) TCGA-BR-8289-01 7 107399250 107399250 T C CBLL1 Missense_Mutation p.V368A 0.36 tolerated(0.17) possibly_damaging(0.554) TCGA-BR-8289-01 7 117292912 117292912 C G CFTR Missense_Mutation p.S1297C 0.35 deleterious(0) benign(0.058) TCGA-BR-8289-01 7 122811949 122811949 C T SLC13A1 Missense_Mutation p.A80T 0.44 tolerated(0.12) benign(0.052) TCGA-BR-8289-01 7 139090517 139090517 A C LUC7L2 Missense_Mutation p.K231T 0.38 deleterious(0.03) possibly_damaging(0.898) TCGA-BR-8289-01 7 139706972 139706972 C A TBXAS1 Missense_Mutation p.P453T 0.37 deleterious(0.01) probably_damaging(1) TCGA-BR-8289-01 7 154863136 154863136 C T HTR5A Missense_Mutation p.P176L 0.32 deleterious(0.04) probably_damaging(0.927) TCGA-BR-8289-01 7 2274902 2274902 C T FTSJ2 Missense_Mutation p.S199N 0.63 tolerated(0.41) benign(0.073) TCGA-BR-8289-01 7 32109917 32109917 C G PDE1C Intron 0.09 TCGA-BR-8289-01 7 39125486 39125486 T G POU6F2 Missense_Mutation p.S15R 0.12 deleterious_low_confidence(0.03) probably_damaging(0.974) TCGA-BR-8289-01 7 48431709 48431709 A C ABCA13 Missense_Mutation p.K3949T 0.44 benign(0.091) TCGA-BR-8289-01 7 99621500 99621500 G A ZKSCAN1 Missense_Mutation p.G124E 0.34 deleterious(0) probably_damaging(1) TCGA-BR-8289-01 8 13356730 13356730 C T DLC1 Missense_Mutation p.C284Y 0.94 tolerated_low_confidence(0.21) benign(0.035) TCGA-BR-8289-01 8 144406731 144406731 G A TOP1MT Missense_Mutation p.T247M 0.17 tolerated(0.1) possibly_damaging(0.665) TCGA-BR-8289-01 8 145749546 145749546 G A LRRC24 Silent p.I185I 0.25 TCGA-BR-8289-01 8 17570732 17570732 G C MTUS1 Missense_Mutation p.L872V 0.05 tolerated(0.06) benign(0.061) TCGA-BR-8289-01 8 2966175 2966175 T G CSMD1 Missense_Mutation p.K2235T 0.30 benign(0.258) TCGA-BR-8289-01 8 36766874 36766874 G A KCNU1 Missense_Mutation p.A718T 0.13 deleterious(0.02) possibly_damaging(0.472) TCGA-BR-8289-01 8 51314780 51314780 G T SNTG1 Missense_Mutation p.G13V 0.19 deleterious(0) probably_damaging(0.973) TCGA-BR-8289-01 8 69002838 69002838 T G PREX2 Missense_Mutation p.L713R 0.09 deleterious(0) probably_damaging(0.999) TCGA-BR-8289-01 8 74893615 74893615 C T TMEM70 Missense_Mutation p.A181V 0.24 deleterious(0.03) probably_damaging(0.974) TCGA-BR-8289-01 9 113170371 113170371 C G SVEP1 Missense_Mutation p.E2503D 0.15 possibly_damaging(0.793) TCGA-BR-8289-01 9 116931258 116931258 C T COL27A1 Missense_Mutation p.R475C 0.11 unknown(0) TCGA-BR-8289-01 9 119976963 119976963 T C ASTN2 Missense_Mutation p.Q230R 0.26 tolerated_low_confidence(1) unknown(0) TCGA-BR-8289-01 9 125140225 125140225 C T PTGS1 Missense_Mutation p.R48C 0.29 deleterious(0.01) probably_damaging(0.962) TCGA-BR-8289-01 9 131757647 131757647 G A NUP188 Missense_Mutation p.E1069K 0.16 tolerated(0.48) benign(0.002) TCGA-BR-8289-01 9 132571733 132571733 C A TOR1B Silent p.A294A 0.18 TCGA-BR-8289-01 9 138395577 138395577 C T MRPS2 Silent p.G163G 0.29 TCGA-BR-8289-01 9 27950090 27950090 T C LINGO2 Missense_Mutation p.T194A 0.13 tolerated(0.27) benign(0.204) TCGA-BR-8289-01 9 43627226 43627226 G T SPATA31A6 Silent p.P487P 0.22 TCGA-BR-8289-01 9 79836216 79836216 T C VPS13A Missense_Mutation p.Y369H 0.37 deleterious(0) probably_damaging(0.996) TCGA-BR-8289-01 9 97062730 97062730 G A ZNF169 Missense_Mutation p.R297Q 0.29 tolerated(0.18) possibly_damaging(0.767) TCGA-BR-8289-01 X 100106242 100106242 G T NOX1 Missense_Mutation p.Q293K 0.50 deleterious(0.01) possibly_damaging(0.852) TCGA-BR-8289-01 X 100809339 100809339 T G ARMCX1 3'UTR 0.62 TCGA-BR-8289-01 X 105153261 105153261 A C NRK Missense_Mutation p.N544T 0.33 deleterious_low_confidence(0) possibly_damaging(0.503) TCGA-BR-8289-01 X 109247079 109247079 G T TMEM164 Missense_Mutation p.G26V 0.14 deleterious(0) probably_damaging(1) TCGA-BR-8289-01 X 114141192 114141192 A C HTR2C Missense_Mutation p.E197D 0.29 tolerated(0.67) benign(0.01) TCGA-BR-8289-01 X 128695194 128695194 A C OCRL Missense_Mutation p.Y288S 0.25 deleterious(0) probably_damaging(1) TCGA-BR-8289-01 X 130217933 130217933 G A ARHGAP36 Missense_Mutation p.R182H 0.39 tolerated(0.18) probably_damaging(0.999) TCGA-BR-8289-01 X 154159499 154159499 A C F8 Missense_Mutation p.F856V 0.32 tolerated(0.12) benign(0.001) TCGA-BR-8289-01 X 22292332 22292332 A C ZNF645 Silent p.S408S 0.33 TCGA-BR-8289-01 X 32430014 32430014 T C DMD Missense_Mutation p.K1363R 0.46 possibly_damaging(0.828) TCGA-BR-8289-01 X 34149499 34149499 C A FAM47A Silent p.G299G 0.26 TCGA-BR-8289-01 X 49958929 49958929 G A AKAP4 Silent p.G145G 0.60 TCGA-BR-8289-01 X 77158163 77158163 G A COX7B Missense_Mutation p.A22T 0.19 tolerated(0.13) benign(0.364) TCGA-BR-8291-01 11 132290138 132290138 A G OPCML Silent p.A329A 0.17 TCGA-BR-8291-01 11 5364208 5364208 T A OR51B5 Missense_Mutation p.I183F 0.24 deleterious(0.01) possibly_damaging(0.883) TCGA-BR-8291-01 12 101679619 101679619 C G UTP20 Missense_Mutation p.L96V 0.15 deleterious(0) probably_damaging(0.998) TCGA-BR-8291-01 12 103249044 103249044 C A PAH Missense_Mutation p.K192N 0.18 tolerated(0.16) benign(0.005) TCGA-BR-8291-01 12 23893843 23893843 T G SOX5 Missense_Mutation p.K233N 0.12 deleterious(0) probably_damaging(0.996) TCGA-BR-8291-01 12 49361823 49361823 C G WNT10B Missense_Mutation p.G206A 0.19 tolerated(0.06) probably_damaging(0.999) TCGA-BR-8291-01 12 57066579 57066579 C T PTGES3 Missense_Mutation p.S44N 0.27 tolerated(0.21) benign(0) TCGA-BR-8291-01 12 70918346 70918346 C T PTPRB Missense_Mutation p.C2177Y 0.12 deleterious(0) probably_damaging(1) TCGA-BR-8291-01 12 82752183 82752183 G C CCDC59 5'UTR 0.31 TCGA-BR-8291-01 13 113460568 113460568 T C ATP11A Silent p.L98L 0.08 TCGA-BR-8291-01 15 41277579 41277579 C A INO80 Missense_Mutation p.R1293L 0.09 tolerated(0.05) benign(0.097) TCGA-BR-8291-01 15 45047126 45047126 A G TRIM69 Missense_Mutation p.D12G 0.12 deleterious_low_confidence(0.03) benign(0.169) TCGA-BR-8291-01 16 28734801 28734801 G T EIF3C Missense_Mutation p.E323D 0.15 tolerated(0.1) possibly_damaging(0.649) TCGA-BR-8291-01 17 31323950 31323950 A C SPACA3 Missense_Mutation p.I145L 0.20 tolerated(0.15) benign(0.246) TCGA-BR-8291-01 17 48562190 48562190 C T RSAD1 Nonsense_Mutation p.Q433* 0.36 TCGA-BR-8291-01 17 66980283 66980283 C T ABCA9 Silent p.E1471E 0.10 TCGA-BR-8291-01 19 19625817 19625817 G A TSSK6 Silent p.N140N 0.16 TCGA-BR-8291-01 19 37130886 37130886 C A ZNF461 Nonsense_Mutation p.E121* 0.32 TCGA-BR-8291-01 19 38966037 38966037 G A RYR1 Missense_Mutation p.V1414M 0.35 probably_damaging(0.984) TCGA-BR-8291-01 19 55489171 55489171 G A NLRP2 Missense_Mutation p.R126H 0.23 tolerated(0.24) benign(0) TCGA-BR-8291-01 1 157667132 157667132 C G FCRL3 Missense_Mutation p.Q214H 0.20 tolerated(0.16) probably_damaging(0.967) TCGA-BR-8291-01 20 57613669 57613669 G T SLMO2 Missense_Mutation p.T18K 0.20 tolerated(0.1) benign(0.32) TCGA-BR-8291-01 20 62407312 62407312 G A ZBTB46 Missense_Mutation p.A314V 0.12 tolerated(0.18) benign(0.005) TCGA-BR-8291-01 2 105959525 105959525 A G C2orf49 Missense_Mutation p.K163E 0.11 tolerated(0.11) benign(0.017) TCGA-BR-8291-01 2 220331910 220331910 C T SPEG Missense_Mutation p.R966W 0.23 probably_damaging(0.957) TCGA-BR-8291-01 3 53902805 53902805 G T ACTR8 Silent p.R606R 0.17 TCGA-BR-8291-01 5 139494596 139494596 A G PURA Missense_Mutation p.E277G 0.10 tolerated(0.06) benign(0.307) TCGA-BR-8291-01 6 151671966 151671966 C T AKAP12 Nonsense_Mutation p.R814* 0.10 TCGA-BR-8291-01 7 87031414 87031414 A G ABCB4 Nonstop_Mutation p.*1287Rext*? 0.26 TCGA-BR-8291-01 7 88966144 88966144 T G ZNF804B Missense_Mutation p.L1283R 0.16 deleterious(0) probably_damaging(0.959) TCGA-BR-8291-01 8 3256967 3256967 C A CSMD1 Missense_Mutation p.C784F 0.19 probably_damaging(0.999) TCGA-BR-8291-01 X 77298826 77298826 G A ATP7A Silent p.L1339L 0.50 TCGA-BR-8295-01 10 124377716 124377716 A G DMBT1 Missense_Mutation p.Q1563R 0.24 tolerated(1) benign(0.004) TCGA-BR-8295-01 11 48510989 48510989 T C OR4A47 Silent p.S215S 0.26 TCGA-BR-8295-01 11 56237826 56237826 T C OR5M3 Missense_Mutation p.S50G 0.23 deleterious(0.01) benign(0.146) TCGA-BR-8295-01 12 113812717 113812717 G A PLBD2 Missense_Mutation p.S255N 0.34 tolerated(0.29) benign(0.219) TCGA-BR-8295-01 12 120575538 120575538 C G GCN1L1 Missense_Mutation p.E2158D 0.24 benign(0.001) TCGA-BR-8295-01 12 130898838 130898838 T C RIMBP2 Silent p.R828R 0.33 TCGA-BR-8295-01 12 40692056 40692056 T G LRRK2 Missense_Mutation p.S1036R 0.38 tolerated(0.14) benign(0.384) TCGA-BR-8295-01 12 64587772 64587772 G C C12orf66 Silent p.T396T 0.05 TCGA-BR-8295-01 14 106926336 106926336 A C IGHV3-43 Missense_Mutation p.L69R 0.38 tolerated_low_confidence(0.35) benign(0.001) TCGA-BR-8295-01 14 81251532 81251532 G C CEP128 Missense_Mutation p.L640V 0.18 deleterious(0.02) probably_damaging(0.998) TCGA-BR-8295-01 15 75641581 75641582 TA - NEIL1 Frame_Shift_Del p.C113Ffs*42 0.26 TCGA-BR-8295-01 15 81428957 81428957 G A C15orf26 Missense_Mutation p.R87H 0.25 tolerated(0.16) benign(0.309) TCGA-BR-8295-01 16 67763622 67763622 G C RANBP10 Missense_Mutation p.P370A 0.32 deleterious(0.03) possibly_damaging(0.622) TCGA-BR-8295-01 17 48917788 48917788 G A WFIKKN2 Missense_Mutation p.S380N 0.52 tolerated(0.53) benign(0) TCGA-BR-8295-01 17 7577554 7577562 TGCAGGAAC - TP53 In_Frame_Del p.S240_C242del 0.39 TCGA-BR-8295-01 18 13087566 13087566 A T CEP192 Missense_Mutation p.I1972F 0.12 tolerated(0.25) benign(0.034) TCGA-BR-8295-01 18 35145634 35145634 C G CELF4 5'UTR 0.14 TCGA-BR-8295-01 18 67406320 67406320 A T DOK6 Missense_Mutation p.E240V 0.14 deleterious(0) benign(0.08) TCGA-BR-8295-01 18 7080363 7080363 A T LAMA1 Missense_Mutation p.L52H 0.40 deleterious(0) probably_damaging(1) TCGA-BR-8295-01 19 21300801 21300801 G C ZNF714 Missense_Mutation p.R444T 0.26 tolerated(0.41) benign(0.254) TCGA-BR-8295-01 19 46997109 46997109 C T PNMAL2 Silent p.A538A 0.35 TCGA-BR-8295-01 19 9045953 9045954 AG - MUC16 Frame_Shift_Del p.L11893Dfs*17 0.19 TCGA-BR-8295-01 1 145608112 145608112 C G POLR3C Missense_Mutation p.L195F 0.15 deleterious(0.02) possibly_damaging(0.793) TCGA-BR-8295-01 1 160970514 160970514 C G F11R Missense_Mutation p.V99L 0.17 deleterious(0) possibly_damaging(0.789) TCGA-BR-8295-01 1 197898303 197898303 A G LHX9 Missense_Mutation p.I370V 0.87 tolerated(0.28) benign(0.03) TCGA-BR-8295-01 1 247654603 247654603 C A OR2W5 RNA 0.22 TCGA-BR-8295-01 1 248262671 248262671 A T OR2L13 5'UTR 0.34 TCGA-BR-8295-01 1 29618490 29618490 G A PTPRU Missense_Mutation p.E820K 0.15 deleterious(0.05) benign(0.064) TCGA-BR-8295-01 1 85424250 85424250 C G MCOLN2 Missense_Mutation p.E125Q 0.11 tolerated(0.6) benign(0.004) TCGA-BR-8295-01 21 31587611 31587611 G A CLDN8 Silent p.T211T 0.33 TCGA-BR-8295-01 22 32588982 32588982 G A RFPL2 Missense_Mutation p.R155W 0.48 tolerated(0.21) benign(0.008) TCGA-BR-8295-01 22 38877230 38877233 TCTC - KDELR3 Frame_Shift_Del p.F122Lfs*15 0.20 TCGA-BR-8295-01 2 17699573 17699573 C T RAD51AP2 Missense_Mutation p.C37Y 0.47 deleterious(0.02) benign(0.253) TCGA-BR-8295-01 2 192543750 192543750 G C NABP1 Silent p.V42V 0.26 TCGA-BR-8295-01 2 212566719 212566719 G A ERBB4 Missense_Mutation p.R488W 0.22 deleterious(0.02) benign(0.248) TCGA-BR-8295-01 2 228882483 228882483 T A SPHKAP Missense_Mutation p.E1029D 0.33 tolerated(0.6) benign(0.047) TCGA-BR-8295-01 2 31133683 31133683 C A GALNT14 3'UTR 0.24 TCGA-BR-8295-01 2 74173903 74173903 C T DGUOK Nonsense_Mutation p.R105* 0.28 TCGA-BR-8295-01 2 98351812 98351812 C T ZAP70 Silent p.D394D 0.31 TCGA-BR-8295-01 3 111603422 111603422 G A PHLDB2 Silent p.G166G 0.22 TCGA-BR-8295-01 3 141161650 141161650 A G ZBTB38 Silent p.E140E 0.59 TCGA-BR-8295-01 3 148459062 148459062 T G AGTR1 Silent p.T80T 0.34 TCGA-BR-8295-01 3 167189651 167189651 A C SERPINI2 Intron 0.52 TCGA-BR-8295-01 3 19498281 19498281 C G KCNH8 Missense_Mutation p.A616G 0.18 deleterious(0.02) probably_damaging(0.99) TCGA-BR-8295-01 4 38829331 38829331 G A TLR6 Silent p.I588I 0.31 TCGA-BR-8295-01 5 140257093 140257093 C T PCDHA12 Missense_Mutation p.S679L 0.69 deleterious_low_confidence(0.04) benign(0.087) TCGA-BR-8295-01 5 23522495 23522495 G A PRDM9 Silent p.P197P 0.10 TCGA-BR-8295-01 5 68809860 68809860 A G OCLN Missense_Mutation p.D272G 0.26 tolerated(0.64) benign(0.001) TCGA-BR-8295-01 6 3017158 3017158 C G NQO2 Missense_Mutation p.A153G 0.21 tolerated(0.42) benign(0.107) TCGA-BR-8295-01 6 30457288 30457288 C T HLA-E 5'UTR 0.09 TCGA-BR-8295-01 6 53764636 53764636 T A LRRC1 Nonsense_Mutation p.L245* 0.21 TCGA-BR-8295-01 6 82461589 82461589 G T FAM46A Missense_Mutation p.F90L 0.29 deleterious(0.04) probably_damaging(0.91) TCGA-BR-8295-01 6 86328633 86328634 - T SYNCRIP Frame_Shift_Ins p.D395Rfs*8 0.21 TCGA-BR-8295-01 7 116140362 116140365 GACA - CAV2 Frame_Shift_Del p.D67Kfs*16 0.53 TCGA-BR-8295-01 7 117267653 117267653 C T CFTR Silent p.Y1182Y 0.17 TCGA-BR-8295-01 7 146536859 146536859 T G CNTNAP2 Missense_Mutation p.F89V 0.20 deleterious(0) benign(0.063) TCGA-BR-8295-01 7 70800605 70800605 T C WBSCR17 Missense_Mutation p.L103P 0.51 deleterious(0) probably_damaging(0.993) TCGA-BR-8295-01 7 7612723 7612723 G C MIOS Missense_Mutation p.R206P 0.17 deleterious(0.01) possibly_damaging(0.854) TCGA-BR-8295-01 8 37611483 37611483 T A ERLIN2 Silent p.A290A 0.30 TCGA-BR-8295-01 9 133901754 133901754 C T LAMC3 Silent p.R152R 0.65 TCGA-BR-8295-01 X 1424540 1424540 A G CSF2RA Intron 0.62 TCGA-BR-8295-01 X 30269583 30269583 C T MAGEB1 Missense_Mutation p.R325C 0.49 tolerated(0.17) unknown(0) TCGA-BR-8295-01 X 48544341 48544341 G A WAS Missense_Mutation p.R157H 0.36 deleterious(0.04) benign(0.009) TCGA-BR-8296-01 10 26581413 26581413 C T GAD2 Missense_Mutation p.A469V 0.10 tolerated(0.27) probably_damaging(0.989) TCGA-BR-8296-01 10 27688039 27688039 A T PTCHD3 Silent p.T496T 0.05 TCGA-BR-8296-01 10 50835788 50835788 C T CHAT Silent p.D356D 0.07 TCGA-BR-8296-01 10 99141471 99141471 C G RRP12 Splice_Site p.X440_splice 0.18 TCGA-BR-8296-01 11 113650730 113650730 G T CLDN25 Missense_Mutation p.L71F 0.13 deleterious(0.01) benign(0.35) TCGA-BR-8296-01 11 117711023 117711023 C T FXYD6 Intron 0.10 TCGA-BR-8296-01 11 123893746 123893746 G A OR10G9 Silent p.A9A 0.09 TCGA-BR-8296-01 11 18194966 18194966 C T MRGPRX4 Missense_Mutation p.R55C 0.21 tolerated(0.26) benign(0.047) TCGA-BR-8296-01 11 31327931 31327931 C A DCDC1 Missense_Mutation p.A147S 0.22 tolerated(0.32) benign(0.046) TCGA-BR-8296-01 11 66099763 66099763 C T RIN1 Missense_Mutation p.R779Q 0.14 tolerated_low_confidence(1) benign(0.238) TCGA-BR-8296-01 11 84634228 84634228 C T DLG2 Intron 0.31 TCGA-BR-8296-01 11 94759385 94759385 C T KDM4E Missense_Mutation p.R222C 0.12 tolerated(0.07) benign(0.012) TCGA-BR-8296-01 12 101016092 101016092 C G GAS2L3 Missense_Mutation p.H230D 0.08 deleterious(0.01) benign(0.27) TCGA-BR-8296-01 12 101016095 101016095 C T GAS2L3 Nonsense_Mutation p.R231* 0.08 TCGA-BR-8296-01 12 101017925 101017925 C G GAS2L3 Missense_Mutation p.P448A 0.12 tolerated(0.75) benign(0.014) TCGA-BR-8296-01 12 101018070 101018070 C A GAS2L3 Missense_Mutation p.S496Y 0.15 deleterious(0.02) probably_damaging(0.935) TCGA-BR-8296-01 12 101018357 101018357 C G GAS2L3 Missense_Mutation p.Q592E 0.09 deleterious(0.04) benign(0.445) TCGA-BR-8296-01 12 123187315 123187315 G A HCAR2 Silent p.G172G 0.11 TCGA-BR-8296-01 12 96077367 96077367 C G NTN4 Missense_Mutation p.C434S 0.07 deleterious(0.03) probably_damaging(0.919) TCGA-BR-8296-01 13 114806557 114806557 G C RASA3 Missense_Mutation p.I97M 0.20 deleterious(0) possibly_damaging(0.453) TCGA-BR-8296-01 13 33016759 33016759 C G N4BP2L2 Missense_Mutation p.E639Q 0.13 deleterious(0.04) possibly_damaging(0.801) TCGA-BR-8296-01 13 92101163 92101163 G A GPC5 Silent p.A104A 0.28 TCGA-BR-8296-01 14 30100211 30100211 T C PRKD1 Missense_Mutation p.E470G 0.10 deleterious(0) probably_damaging(0.996) TCGA-BR-8296-01 14 73730411 73730411 C T PAPLN Missense_Mutation p.R901W 0.16 deleterious(0.01) probably_damaging(0.924) TCGA-BR-8296-01 16 16126992 16126992 C A ABCC1 Silent p.S214S 0.19 TCGA-BR-8296-01 16 1808983 1808983 C T MAPK8IP3 Silent p.R410R 0.09 TCGA-BR-8296-01 17 10417440 10417440 C T MYH1 Missense_Mutation p.G179R 0.11 deleterious(0.01) probably_damaging(0.994) TCGA-BR-8296-01 17 4457494 4457494 T C MYBBP1A Missense_Mutation p.K125R 0.07 deleterious(0) probably_damaging(0.913) TCGA-BR-8296-01 17 62488810 62488810 G A POLG2 Missense_Mutation p.R257C 0.10 deleterious(0) possibly_damaging(0.905) TCGA-BR-8296-01 17 64212961 64212961 C T APOH Silent p.P243P 0.18 TCGA-BR-8296-01 17 68128638 68128638 G A KCNJ16 Missense_Mutation p.R137H 0.08 deleterious(0) probably_damaging(0.93) TCGA-BR-8296-01 17 7577568 7577568 C A TP53 Missense_Mutation p.C238F 0.08 deleterious(0) probably_damaging(1) TCGA-BR-8296-01 18 42532485 42532485 G A SETBP1 Missense_Mutation p.M1060I 0.19 tolerated(0.31) probably_damaging(0.964) TCGA-BR-8296-01 18 59221564 59221564 C T CDH20 Missense_Mutation p.A681V 0.09 tolerated(0.15) possibly_damaging(0.902) TCGA-BR-8296-01 19 10132297 10132297 G A RDH8 Missense_Mutation p.V290M 0.16 deleterious(0.05) benign(0.063) TCGA-BR-8296-01 19 15651382 15651382 C T CYP4F22 Missense_Mutation p.R265W 0.07 deleterious(0.02) benign(0.017) TCGA-BR-8296-01 19 54314031 54314031 G A NLRP12 Silent p.D294D 0.27 TCGA-BR-8296-01 19 54758651 54758651 G C LILRB5 Missense_Mutation p.S401C 0.33 deleterious(0) probably_damaging(0.993) TCGA-BR-8296-01 19 54932467 54932467 G A TTYH1 Missense_Mutation p.G108S 0.17 deleterious(0) probably_damaging(1) TCGA-BR-8296-01 1 160681579 160681579 C T CD48 5'UTR 0.14 TCGA-BR-8296-01 1 196799765 196799765 G A CFHR1 Missense_Mutation p.R248Q 0.26 tolerated(0.48) probably_damaging(0.994) TCGA-BR-8296-01 1 223285764 223285764 C A TLR5 Missense_Mutation p.A204S 0.12 tolerated(0.92) benign(0.018) TCGA-BR-8296-01 1 228481244 228481244 C T OBSCN Silent p.L4115L 0.13 TCGA-BR-8296-01 1 237026774 237026774 C T MTR Silent p.I775I 0.12 TCGA-BR-8296-01 1 55186864 55186864 G A TTC4 Silent p.V140V 0.10 TCGA-BR-8296-01 20 36627656 36627656 C T TTI1 Silent p.Q909Q 0.09 TCGA-BR-8296-01 20 39833134 39833134 G A ZHX3 Silent p.N141N 0.10 TCGA-BR-8296-01 22 35719519 35719519 G A TOM1 Missense_Mutation p.D133N 0.18 deleterious(0) probably_damaging(0.998) TCGA-BR-8296-01 2 113942985 113942985 G A PSD4 Nonsense_Mutation p.W406* 0.06 TCGA-BR-8296-01 2 152397310 152397310 C A NEB Silent p.L6896L 0.11 TCGA-BR-8296-01 2 186672333 186672333 G C FSIP2 Missense_Mutation p.E6189D 0.09 probably_damaging(0.998) TCGA-BR-8296-01 2 234526296 234526296 G A UGT1A8 5'UTR 0.10 TCGA-BR-8296-01 2 242814250 242814250 C T CXXC11 Silent p.T181T 0.17 TCGA-BR-8296-01 2 26332773 26332773 G T RAB10 Nonsense_Mutation p.E109* 0.14 TCGA-BR-8296-01 2 28812361 28812361 G A PLB1 Silent p.R620R 0.14 TCGA-BR-8296-01 3 10417266 10417266 C T ATP2B2 Missense_Mutation p.V422M 0.09 tolerated(0.15) probably_damaging(0.968) TCGA-BR-8296-01 3 129152786 129152786 G T MBD4 Missense_Mutation p.P440T 0.13 deleterious(0) probably_damaging(1) TCGA-BR-8296-01 3 134920403 134920403 T C EPHB1 Missense_Mutation p.Y740H 0.13 deleterious(0) probably_damaging(0.999) TCGA-BR-8296-01 3 13669425 13669425 G A FBLN2 Missense_Mutation p.R842H 0.08 tolerated(0.06) probably_damaging(0.944) TCGA-BR-8296-01 3 172486836 172486836 C T ECT2 Missense_Mutation p.T444I 0.15 tolerated(0.09) possibly_damaging(0.899) TCGA-BR-8296-01 4 100470352 100470352 C T TRMT10A Missense_Mutation p.D305N 0.14 tolerated(0.13) possibly_damaging(0.813) TCGA-BR-8296-01 4 128841737 128841737 C T MFSD8 3'UTR 0.11 TCGA-BR-8296-01 4 134073378 134073378 G C PCDH10 Missense_Mutation p.G695R 0.16 tolerated(0.69) probably_damaging(0.99) TCGA-BR-8296-01 4 68928339 68928339 T A TMPRSS11F Intron 0.12 TCGA-BR-8296-01 5 11364949 11364949 G A CTNND2 Missense_Mutation p.R411W 0.12 deleterious(0) probably_damaging(0.929) TCGA-BR-8296-01 5 156590425 156590425 A - FAM71B Frame_Shift_Del p.I284Kfs*6 0.07 TCGA-BR-8296-01 5 76028449 76028449 C T F2R Silent p.V133V 0.17 TCGA-BR-8296-01 6 100382330 100382330 A G MCHR2 Silent p.Y217Y 0.10 TCGA-BR-8296-01 6 117083148 117083148 C A FAM162B Missense_Mutation p.A128S 0.13 deleterious(0.01) probably_damaging(0.976) TCGA-BR-8296-01 6 130425629 130425629 C T L3MBTL3 Missense_Mutation p.R599C 0.09 deleterious(0) probably_damaging(0.998) TCGA-BR-8296-01 6 158870124 158870124 G A TULP4 Missense_Mutation p.G214S 0.18 tolerated(1) benign(0.001) TCGA-BR-8296-01 6 170592399 170592399 G T DLL1 Missense_Mutation p.D656E 0.13 tolerated(0.46) benign(0.003) TCGA-BR-8296-01 7 15584510 15584510 T A AGMO Missense_Mutation p.Y99F 0.17 deleterious(0.03) benign(0.077) TCGA-BR-8296-01 7 48559747 48559747 G C ABCA13 Silent p.L4636L 0.07 TCGA-BR-8296-01 7 83614755 83614755 C G SEMA3A Missense_Mutation p.K497N 0.13 deleterious(0) possibly_damaging(0.528) TCGA-BR-8296-01 8 17601257 17601257 C T MTUS1 Missense_Mutation p.D715N 0.19 tolerated(0.19) benign(0.05) TCGA-BR-8296-01 8 52384808 52384808 C T PXDNL Missense_Mutation p.V251I 0.08 deleterious(0.04) possibly_damaging(0.868) TCGA-BR-8296-01 8 69009347 69009347 G A PREX2 Missense_Mutation p.V822M 0.10 deleterious(0.05) benign(0.079) TCGA-BR-8296-01 9 136341384 136341384 G A SLC2A6 Silent p.F179F 0.11 TCGA-BR-8296-01 9 72132004 72132004 C T APBA1 Silent p.P41P 0.33 TCGA-BR-8296-01 9 84609979 84609979 C T SPATA31D1 Missense_Mutation p.R1532W 0.11 tolerated(0.08) possibly_damaging(0.736) TCGA-BR-8296-01 X 110494255 110494255 G A CAPN6 Nonsense_Mutation p.R350* 0.11 TCGA-BR-8296-01 X 119010618 119010619 - A NDUFA1 3'UTR 0.13 TCGA-BR-8296-01 X 123220506 123220506 G A STAG2 Missense_Mutation p.D1055N 0.09 tolerated(0.1) possibly_damaging(0.879) TCGA-BR-8296-01 X 124097522 124097524 AGA - TENM1 In_Frame_Del p.S27del 0.10 TCGA-BR-8296-01 X 135631089 135631089 G A VGLL1 Missense_Mutation p.A186T 0.04 tolerated(0.71) benign(0.006) TCGA-BR-8296-01 X 144905642 144905642 G C SLITRK2 Missense_Mutation p.E567Q 0.10 tolerated(0.23) benign(0.027) TCGA-BR-8296-01 X 145078219 145078219 C T MIR892A RNA 0.12 TCGA-BR-8296-01 X 149905805 149905805 C T MTMR1 Missense_Mutation p.T445I 0.08 deleterious(0) probably_damaging(1) TCGA-BR-8296-01 X 46541843 46541843 G A SLC9A7 Silent p.F151F 0.17 TCGA-BR-8296-01 X 47836536 47836536 G A ZNF182 Missense_Mutation p.P317L 0.07 deleterious(0.01) probably_damaging(1) TCGA-BR-8296-01 X 53576261 53576261 G A HUWE1 Missense_Mutation p.R3232C 0.11 possibly_damaging(0.689) TCGA-BR-8296-01 X 55515254 55515254 G A USP51 Missense_Mutation p.A40V 0.12 tolerated_low_confidence(0.1) unknown(0) TCGA-BR-8297-01 10 105037931 105037931 G A INA Silent p.A321A 0.11 TCGA-BR-8297-01 10 108923912 108923912 T C SORCS1 Missense_Mutation p.S125G 0.08 tolerated(0.24) benign(0.001) TCGA-BR-8297-01 10 118137945 118137945 G C CCDC172 Missense_Mutation p.E222Q 0.12 deleterious(0) probably_damaging(0.999) TCGA-BR-8297-01 10 125506504 125506504 T C CPXM2 Missense_Mutation p.N683D 0.05 deleterious(0) probably_damaging(0.999) TCGA-BR-8297-01 10 127438041 127438041 G T EDRF1 Missense_Mutation p.A1062S 0.12 tolerated(0.07) probably_damaging(0.999) TCGA-BR-8297-01 10 131666103 131666103 G A EBF3 Silent p.G276G 0.14 TCGA-BR-8297-01 10 27703150 27703150 C T PTCHD3 Silent p.P10P 0.17 TCGA-BR-8297-01 10 37421204 37421204 A G ANKRD30A Missense_Mutation p.R127G 0.06 tolerated(0.21) possibly_damaging(0.849) TCGA-BR-8297-01 10 46961953 46961953 C T SYT15 3'UTR 0.06 TCGA-BR-8297-01 10 55581852 55581852 T G PCDH15 Missense_Mutation p.E1880D 0.05 deleterious_low_confidence(0) unknown(0) TCGA-BR-8297-01 10 70666568 70666568 A G DDX50 Silent p.K63K 0.19 TCGA-BR-8297-01 10 87489289 87489289 A G GRID1 Missense_Mutation p.L439P 0.05 deleterious(0) probably_damaging(0.999) TCGA-BR-8297-01 10 88768495 88768495 G T RP11-96C23.10 3'Flank 0.06 TCGA-BR-8297-01 10 97791581 97791581 C T CC2D2B Missense_Mutation p.T341M 0.08 deleterious(0) possibly_damaging(0.817) TCGA-BR-8297-01 11 10648081 10648081 A G MRVI1 Missense_Mutation p.V267A 0.16 deleterious(0.04) possibly_damaging(0.492) TCGA-BR-8297-01 11 117332215 117332215 G A DSCAML1 Silent p.G1181G 0.07 TCGA-BR-8297-01 11 1270309 1270309 T C MUC5B Missense_Mutation p.S4067P 0.13 unknown(0) TCGA-BR-8297-01 11 2154256 2154256 G A IGF2 Silent p.H224H 0.07 TCGA-BR-8297-01 11 40137506 40137506 T C LRRC4C Missense_Mutation p.R113G 0.11 deleterious(0) probably_damaging(0.916) TCGA-BR-8297-01 11 46774965 46774965 A C CKAP5 Missense_Mutation p.L1651R 0.18 deleterious(0) probably_damaging(0.972) TCGA-BR-8297-01 11 46890212 46890212 G A LRP4 Silent p.A1630A 0.09 TCGA-BR-8297-01 11 4825639 4825639 A G OR52R1 5'Flank 0.06 TCGA-BR-8297-01 11 55606243 55606243 A G OR5D16 Missense_Mutation p.R6G 0.08 tolerated(0.69) benign(0.005) TCGA-BR-8297-01 11 5776163 5776163 T C OR52N4 Silent p.L65L 0.14 TCGA-BR-8297-01 11 59626717 59626717 C T TCN1 Missense_Mutation p.A194T 0.07 deleterious(0) probably_damaging(1) TCGA-BR-8297-01 11 59857259 59857259 C A MS4A2 Missense_Mutation p.L51M 0.06 tolerated(0.1) benign(0.184) TCGA-BR-8297-01 11 62383980 62383980 G A B3GAT3 Missense_Mutation p.R303W 0.07 deleterious(0) probably_damaging(0.916) TCGA-BR-8297-01 11 65617659 65617659 G A SNX32 Silent p.S97S 0.05 TCGA-BR-8297-01 11 67260437 67260437 G A PITPNM1 Missense_Mutation p.R1147C 0.04 deleterious(0) probably_damaging(0.993) TCGA-BR-8297-01 12 10133243 10133243 A C CLEC12A Missense_Mutation p.S158R 0.11 tolerated(0.61) benign(0.043) TCGA-BR-8297-01 12 109541289 109541289 C G UNG Missense_Mutation p.S225C 0.07 deleterious(0) probably_damaging(0.996) TCGA-BR-8297-01 12 119943022 119943022 G C CCDC60 Missense_Mutation p.S266T 0.06 tolerated(0.09) possibly_damaging(0.731) TCGA-BR-8297-01 12 122845597 122845597 G C CLIP1 Missense_Mutation p.A305G 0.07 tolerated(0.29) probably_damaging(0.93) TCGA-BR-8297-01 12 132325159 132325159 C T MMP17 Missense_Mutation p.T155M 0.07 deleterious(0.04) possibly_damaging(0.833) TCGA-BR-8297-01 12 3923335 3923335 T C PARP11 Missense_Mutation p.K190E 0.09 deleterious(0.01) possibly_damaging(0.894) TCGA-BR-8297-01 12 40657648 40657648 A C LRRK2 Missense_Mutation p.K534T 0.06 tolerated(0.06) benign(0.005) TCGA-BR-8297-01 12 47186787 47186787 G T SLC38A4 Missense_Mutation p.A23D 0.06 tolerated(0.44) benign(0.002) TCGA-BR-8297-01 12 52774882 52774882 A C KRT84 Missense_Mutation p.I395M 0.08 deleterious(0.01) possibly_damaging(0.622) TCGA-BR-8297-01 12 53457541 53457541 G A TENC1 Missense_Mutation p.V1379M 0.06 deleterious(0) probably_damaging(1) TCGA-BR-8297-01 12 57501478 57501478 G A STAT6 Silent p.A55A 0.12 TCGA-BR-8297-01 12 57554830 57554830 C T LRP1 Missense_Mutation p.R712C 0.06 benign(0.179) TCGA-BR-8297-01 12 5908717 5908717 C T ANO2 Silent p.A333A 0.08 TCGA-BR-8297-01 12 85255390 85255390 A C SLC6A15 3'UTR 0.04 TCGA-BR-8297-01 12 9162086 9162086 A G KLRG1 Missense_Mutation p.S175G 0.06 deleterious(0) probably_damaging(0.998) TCGA-BR-8297-01 12 9231846 9231846 T G A2M Missense_Mutation p.N1038T 0.06 deleterious(0) possibly_damaging(0.904) TCGA-BR-8297-01 12 99077029 99077029 G A APAF1 Missense_Mutation p.G719R 0.09 deleterious(0.02) possibly_damaging(0.873) TCGA-BR-8297-01 13 103703770 103703770 C T SLC10A2 Missense_Mutation p.A200T 0.15 tolerated(0.53) benign(0.009) TCGA-BR-8297-01 13 23907855 23907855 A C SACS Missense_Mutation p.L3387R 0.09 probably_damaging(0.997) TCGA-BR-8297-01 13 25444738 25444738 T G RNF17 Silent p.T1436T 0.16 TCGA-BR-8297-01 13 36686166 36686166 A G DCLK1 Missense_Mutation p.V188A 0.10 deleterious(0) unknown(0) TCGA-BR-8297-01 13 67205373 67205373 A C PCDH9 Silent p.T1103T 0.13 TCGA-BR-8297-01 13 77574734 77574734 T G CLN5 Nonsense_Mutation p.L285* 0.09 TCGA-BR-8297-01 13 95121039 95121040 - A DCT Frame_Shift_Ins p.V186Cfs*9 0.14 TCGA-BR-8297-01 14 26917993 26917993 T C NOVA1 Silent p.K232K 0.07 TCGA-BR-8297-01 14 47426697 47426697 A G MDGA2 Missense_Mutation p.F657L 0.14 tolerated(0.47) benign(0.029) TCGA-BR-8297-01 14 51383825 51383825 T G PYGL Splice_Site p.X286_splice 0.12 TCGA-BR-8297-01 14 63483661 63483661 A C KCNH5 Missense_Mutation p.L29V 0.12 tolerated(0.51) benign(0.259) TCGA-BR-8297-01 14 80669144 80669144 T G DIO2 Missense_Mutation p.K273T 0.08 tolerated(0.16) possibly_damaging(0.854) TCGA-BR-8297-01 15 25321115 25321115 T G SNORD116-11 RNA 0.05 TCGA-BR-8297-01 15 43045040 43045040 T C TTBK2 Missense_Mutation p.I802V 0.08 tolerated_low_confidence(0.8) benign(0.002) TCGA-BR-8297-01 15 48522588 48522588 A C SLC12A1 Splice_Site p.X289_splice 0.11 TCGA-BR-8297-01 15 53049845 53049845 G A ONECUT1 Silent p.N435N 0.07 TCGA-BR-8297-01 15 63950881 63950881 C T HERC1 Missense_Mutation p.R3154K 0.08 probably_damaging(0.977) TCGA-BR-8297-01 15 71952875 71952875 G A THSD4 Missense_Mutation p.G387S 0.07 deleterious(0) probably_damaging(0.984) TCGA-BR-8297-01 15 92706427 92706427 G C SLCO3A1 3'UTR 0.08 TCGA-BR-8297-01 16 24902195 24902195 G A SLC5A11 Missense_Mutation p.A224T 0.12 tolerated(0.6) benign(0.297) TCGA-BR-8297-01 16 3063534 3063534 G A CLDN9 Silent p.Q57Q 0.06 TCGA-BR-8297-01 16 3065603 3065603 C T CLDN6 Silent p.A140A 0.08 TCGA-BR-8297-01 16 53243482 53243483 - A CHD9 Frame_Shift_Ins p.V517Gfs*11 0.16 TCGA-BR-8297-01 16 67861893 67861893 C A TSNAXIP1 Missense_Mutation p.S658R 0.12 deleterious_low_confidence(0) possibly_damaging(0.597) TCGA-BR-8297-01 16 71606201 71606201 C A TAT Silent p.L198L 0.06 TCGA-BR-8297-01 17 14205355 14205355 G T HS3ST3B1 Missense_Mutation p.D174Y 0.11 deleterious(0) probably_damaging(1) TCGA-BR-8297-01 17 20805638 20805638 A T RP11-344E13.3 RNA 0.08 TCGA-BR-8297-01 17 26667474 26667474 G A TNFAIP1 Silent p.G115G 0.05 TCGA-BR-8297-01 17 3301639 3301639 C T OR1E1 Silent p.E22E 0.08 TCGA-BR-8297-01 17 38191438 38191438 C T MED24 Missense_Mutation p.R164H 0.07 tolerated(0.08) possibly_damaging(0.791) TCGA-BR-8297-01 17 39388901 39388901 A C KRTAP9-3 Missense_Mutation p.T50P 0.05 tolerated(0.06) unknown(0) TCGA-BR-8297-01 17 51901901 51901901 C A KIF2B Missense_Mutation p.L503I 0.07 deleterious(0) probably_damaging(0.999) TCGA-BR-8297-01 17 58885385 58885385 T G BCAS3 Missense_Mutation p.F142V 0.11 deleterious(0) possibly_damaging(0.784) TCGA-BR-8297-01 17 73316366 73316366 G A GRB2 3'UTR 0.09 TCGA-BR-8297-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.27 tolerated(0.11) benign(0.308) TCGA-BR-8297-01 17 8526315 8526315 A C MYH10 Missense_Mutation p.F84V 0.16 probably_damaging(0.991) TCGA-BR-8297-01 18 42531308 42531308 A C SETBP1 Missense_Mutation p.K668T 0.10 deleterious(0) probably_damaging(0.997) TCGA-BR-8297-01 18 76752229 76752229 C A SALL3 Missense_Mutation p.L80M 0.19 deleterious(0) unknown(0) TCGA-BR-8297-01 19 1005304 1005304 G A GRIN3B Missense_Mutation p.G602S 0.13 deleterious(0) probably_damaging(0.999) TCGA-BR-8297-01 19 12903585 12903585 A T JUNB Missense_Mutation p.N334Y 0.14 deleterious(0) benign(0.396) TCGA-BR-8297-01 19 18650400 18650400 C T FKBP8 Silent p.P141P 0.11 TCGA-BR-8297-01 19 22785433 22785433 A C AC011467.1 5'Flank 0.13 TCGA-BR-8297-01 19 23544823 23544823 T C ZNF91 Missense_Mutation p.K320E 0.08 deleterious(0) benign(0.199) TCGA-BR-8297-01 19 30503321 30503321 A T URI1 Silent p.G436G 0.22 TCGA-BR-8297-01 19 36365445 36365445 T C APLP1 Missense_Mutation p.S366P 0.12 deleterious(0) probably_damaging(0.998) TCGA-BR-8297-01 19 38881012 38881012 G A SPRED3 Missense_Mutation p.G24R 0.11 deleterious(0) probably_damaging(0.991) TCGA-BR-8297-01 19 43372099 43372099 T G PSG1 3'UTR 0.25 TCGA-BR-8297-01 19 50390983 50390983 G A TBC1D17 Nonsense_Mutation p.W517* 0.09 TCGA-BR-8297-01 19 54973371 54973371 T A LENG9 Missense_Mutation p.S469C 0.35 tolerated(0.06) possibly_damaging(0.615) TCGA-BR-8297-01 19 57036546 57036546 T C ZNF471 Silent p.T370T 0.06 TCGA-BR-8297-01 19 57641380 57641380 T C USP29 Missense_Mutation p.L446P 0.15 deleterious(0) possibly_damaging(0.9) TCGA-BR-8297-01 19 58578734 58578734 T C ZNF135 Silent p.G318G 0.05 TCGA-BR-8297-01 19 9067492 9067492 T G MUC16 Missense_Mutation p.T6652P 0.07 unknown(0) TCGA-BR-8297-01 1 120056814 120056814 C T HSD3B1 Missense_Mutation p.P223L 0.07 deleterious(0) possibly_damaging(0.795) TCGA-BR-8297-01 1 1203290 1203290 G A UBE2J2 Missense_Mutation p.P28L 0.09 deleterious(0.03) possibly_damaging(0.665) TCGA-BR-8297-01 1 152800031 152800031 A C LCE1A Missense_Mutation p.K28T 0.05 deleterious_low_confidence(0) unknown(0) TCGA-BR-8297-01 1 158390187 158390187 T G OR10K2 Missense_Mutation p.Q157P 0.08 deleterious(0.02) possibly_damaging(0.74) TCGA-BR-8297-01 1 158390391 158390391 T G OR10K2 Missense_Mutation p.K89T 0.10 tolerated(0.56) possibly_damaging(0.675) TCGA-BR-8297-01 1 158435416 158435416 G T OR10K1 Missense_Mutation p.R22M 0.08 deleterious(0.01) possibly_damaging(0.566) TCGA-BR-8297-01 1 158576978 158576978 T C OR10Z1 Silent p.I250I 0.07 TCGA-BR-8297-01 1 158583547 158583547 T C SPTA1 Missense_Mutation p.K2318R 0.07 tolerated(0.06) benign(0.001) TCGA-BR-8297-01 1 158606546 158606546 T G SPTA1 Missense_Mutation p.K1732T 0.10 deleterious(0) probably_damaging(0.998) TCGA-BR-8297-01 1 158615013 158615013 G A SPTA1 Missense_Mutation p.R1387C 0.10 deleterious(0) probably_damaging(1) TCGA-BR-8297-01 1 158651331 158651331 A G SPTA1 Missense_Mutation p.W173R 0.08 deleterious(0) probably_damaging(1) TCGA-BR-8297-01 1 158908331 158908331 A G PYHIN1 Missense_Mutation p.Q137R 0.05 deleterious(0.02) benign(0.178) TCGA-BR-8297-01 1 159410501 159410501 A C OR10J1 Missense_Mutation p.K318T 0.05 tolerated(0.07) benign(0.066) TCGA-BR-8297-01 1 185992242 185992242 C A HMCN1 Missense_Mutation p.N1902K 0.06 possibly_damaging(0.522) TCGA-BR-8297-01 1 19451145 19451145 G C UBR4 Missense_Mutation p.L3160V 0.07 benign(0.249) TCGA-BR-8297-01 1 196684839 196684839 A C CFH Missense_Mutation p.S546R 0.08 tolerated(0.77) benign(0.004) TCGA-BR-8297-01 1 201752711 201752711 G A NAV1 Silent p.P845P 0.06 TCGA-BR-8297-01 1 202861698 202861698 C T KLHL12 Missense_Mutation p.R557H 0.09 deleterious(0) probably_damaging(0.999) TCGA-BR-8297-01 1 208061155 208061155 G A CD34 Silent p.N362N 0.27 TCGA-BR-8297-01 1 222849460 222849460 G C AIDA Silent p.P187P 0.08 TCGA-BR-8297-01 1 226180108 226180108 C T SDE2 Missense_Mutation p.V171I 0.17 deleterious(0.01) probably_damaging(0.945) TCGA-BR-8297-01 1 22837716 22837716 G C ZBTB40 Silent p.L626L 0.08 TCGA-BR-8297-01 1 228434396 228434396 G A OBSCN Missense_Mutation p.A1401T 0.08 benign(0.023) TCGA-BR-8297-01 1 231556836 231556836 C T EGLN1 Missense_Mutation p.E267K 0.21 tolerated(0.23) benign(0.033) TCGA-BR-8297-01 1 231954086 231954086 T C DISC1 Missense_Mutation p.W602R 0.06 tolerated(0.31) benign(0) TCGA-BR-8297-01 1 232561464 232561464 A G SIPA1L2 Missense_Mutation p.F1501L 0.07 tolerated(0.27) benign(0.004) TCGA-BR-8297-01 1 240555824 240555824 A C FMN2 Missense_Mutation p.Q1624H 0.06 benign(0.127) TCGA-BR-8297-01 1 247694757 247694757 A C OR2C3 3'UTR 0.12 TCGA-BR-8297-01 1 248201578 248201578 T G OR2L2 Missense_Mutation p.N3K 0.05 tolerated(0.32) benign(0.003) TCGA-BR-8297-01 1 248525557 248525557 A C OR2T4 Silent p.S225S 0.04 TCGA-BR-8297-01 1 32085185 32085185 C A HCRTR1 Missense_Mutation p.F84L 0.11 deleterious(0) probably_damaging(0.951) TCGA-BR-8297-01 1 43891237 43891237 A C SZT2 Missense_Mutation p.Q913P 0.15 deleterious(0) probably_damaging(0.988) TCGA-BR-8297-01 1 61824865 61824865 G C NFIA Missense_Mutation p.G334R 0.05 tolerated(0.19) probably_damaging(0.975) TCGA-BR-8297-01 1 72163810 72163810 T G NEGR1 Missense_Mutation p.E183A 0.15 tolerated(0.09) benign(0.019) TCGA-BR-8297-01 1 82436124 82436124 A G LPHN2 Missense_Mutation p.K937E 0.06 tolerated(0.06) benign(0.209) TCGA-BR-8297-01 20 20051611 20051611 C T C20orf26 Missense_Mutation p.S86L 0.08 tolerated(0.09) benign(0.168) TCGA-BR-8297-01 20 23016284 23016284 C T SSTR4 Missense_Mutation p.A55V 0.05 tolerated(0.3) benign(0.377) TCGA-BR-8297-01 20 23669650 23669650 G C CST4 5'UTR 0.08 TCGA-BR-8297-01 20 24993551 24993551 G A ACSS1 Missense_Mutation p.A535V 0.05 tolerated(0.09) benign(0.327) TCGA-BR-8297-01 20 34832708 34832708 C T AAR2 Missense_Mutation p.R283W 0.09 tolerated(0.16) possibly_damaging(0.832) TCGA-BR-8297-01 20 50701472 50701472 C A ZFP64 Missense_Mutation p.R521L 0.09 deleterious(0) probably_damaging(0.999) TCGA-BR-8297-01 20 55931555 55931555 G C RAE1 Missense_Mutation p.Q83H 0.09 tolerated(0.51) possibly_damaging(0.879) TCGA-BR-8297-01 20 60584158 60584158 G A TAF4 Nonsense_Mutation p.Q612* 0.23 TCGA-BR-8297-01 20 8626804 8626804 C T PLCB1 Missense_Mutation p.S147F 0.14 deleterious(0) possibly_damaging(0.65) TCGA-BR-8297-01 21 19704431 19704431 A G TMPRSS15 Missense_Mutation p.F542L 0.05 deleterious(0.01) possibly_damaging(0.685) TCGA-BR-8297-01 21 28306875 28306875 C A ADAMTS5 Missense_Mutation p.K533N 0.07 tolerated(0.82) possibly_damaging(0.65) TCGA-BR-8297-01 22 32625330 32625330 T C SLC5A4 Silent p.G377G 0.10 TCGA-BR-8297-01 22 46805053 46805053 G A CELSR1 Missense_Mutation p.P1689L 0.09 tolerated(0.05) possibly_damaging(0.806) TCGA-BR-8297-01 2 116485480 116485480 T - DPP10 Frame_Shift_Del p.F227Lfs*32 0.13 TCGA-BR-8297-01 2 125262020 125262020 T C CNTNAP5 Missense_Mutation p.L404P 0.12 deleterious(0) probably_damaging(1) TCGA-BR-8297-01 2 131520539 131520539 C T AMER3 Silent p.P298P 0.06 TCGA-BR-8297-01 2 133971302 133971302 T G NCKAP5 Missense_Mutation p.S65R 0.10 deleterious(0) possibly_damaging(0.59) TCGA-BR-8297-01 2 141665505 141665505 T C LRP1B Missense_Mutation p.E1154G 0.06 possibly_damaging(0.775) TCGA-BR-8297-01 2 141747223 141747223 T G LRP1B Missense_Mutation p.N883T 0.07 possibly_damaging(0.775) TCGA-BR-8297-01 2 155102400 155102400 T C GALNT13 Silent p.T254T 0.07 TCGA-BR-8297-01 2 16736390 16736390 T C FAM49A Silent p.K285K 0.11 TCGA-BR-8297-01 2 167760333 167760333 T G XIRP2 Missense_Mutation p.L114R 0.06 probably_damaging(0.992) TCGA-BR-8297-01 2 171258164 171258164 C T MYO3B Missense_Mutation p.R698C 0.16 tolerated(0.06) possibly_damaging(0.709) TCGA-BR-8297-01 2 179470170 179470170 G A TTN Missense_Mutation p.P17951L 0.19 TCGA-BR-8297-01 2 179614992 179614992 T G TTN Intron 0.05 TCGA-BR-8297-01 2 191848385 191848385 G A STAT1 Silent p.L477L 0.14 TCGA-BR-8297-01 2 198950584 198950584 T G PLCL1 Silent p.T781T 0.08 TCGA-BR-8297-01 2 198950764 198950764 T G PLCL1 Silent p.L841L 0.13 TCGA-BR-8297-01 2 201305422 201305422 C G SPATS2L Missense_Mutation p.L235V 0.13 deleterious(0) probably_damaging(0.999) TCGA-BR-8297-01 2 204354397 204354397 G A RAPH1 Silent p.S214S 0.15 TCGA-BR-8297-01 2 207170797 207170797 A C ZDBF2 Missense_Mutation p.E515D 0.09 tolerated(0.3) possibly_damaging(0.585) TCGA-BR-8297-01 2 210557419 210557419 A C MAP2 Silent p.S175S 0.09 TCGA-BR-8297-01 2 21234209 21234209 G A APOB Missense_Mutation p.S1844F 0.15 benign(0.006) TCGA-BR-8297-01 2 215812241 215812241 A C ABCA12 Missense_Mutation p.F2382V 0.09 deleterious(0.01) benign(0.063) TCGA-BR-8297-01 2 219134886 219134886 G C AAMP 5'UTR 0.05 TCGA-BR-8297-01 2 219892286 219892286 C T CCDC108 Intron 0.07 TCGA-BR-8297-01 2 233394675 233394675 C T CHRND Missense_Mutation p.R216W 0.15 deleterious(0) probably_damaging(0.996) TCGA-BR-8297-01 2 241405692 241405692 G A GPC1 Silent p.R554R 0.12 TCGA-BR-8297-01 2 63058193 63058193 G A EHBP1 Missense_Mutation p.M178I 0.09 tolerated(0.1) benign(0.094) TCGA-BR-8297-01 2 68544371 68544371 A C CNRIP1 Missense_Mutation p.V83G 0.08 deleterious(0.01) benign(0.073) TCGA-BR-8297-01 2 71741005 71741005 C A DYSF Missense_Mutation p.A238E 0.10 tolerated(0.66) benign(0.068) TCGA-BR-8297-01 2 80540716 80540716 A T CTNNA2 Intron 0.12 TCGA-BR-8297-01 3 118645003 118645003 A G IGSF11 Silent p.T175T 0.07 TCGA-BR-8297-01 3 126751404 126751404 C T PLXNA1 Silent p.Y1802Y 0.06 TCGA-BR-8297-01 3 142681901 142681901 G A PAQR9 Missense_Mutation p.P93L 0.14 deleterious(0) probably_damaging(0.951) TCGA-BR-8297-01 3 191861866 191861866 G A FGF12 Missense_Mutation p.R222C 0.09 deleterious(0.04) possibly_damaging(0.854) TCGA-BR-8297-01 3 19554711 19554711 A C KCNH8 Missense_Mutation p.T777P 0.05 tolerated(0.38) benign(0.079) TCGA-BR-8297-01 3 197402382 197402382 C A KIAA0226 Missense_Mutation p.C884F 0.06 deleterious(0) probably_damaging(0.999) TCGA-BR-8297-01 3 36778860 36778860 G A DCLK3 Silent p.L431L 0.05 TCGA-BR-8297-01 3 36778861 36778861 G A DCLK3 Silent p.I430I 0.05 TCGA-BR-8297-01 3 40085715 40085715 C G MYRIP Nonsense_Mutation p.Y95* 0.08 TCGA-BR-8297-01 3 44541168 44541168 G A ZNF852 Silent p.I367I 0.08 TCGA-BR-8297-01 3 46063459 46063459 C T XCR1 5'UTR 0.15 TCGA-BR-8297-01 3 56207504 56207504 C T ERC2 Silent p.T373T 0.08 TCGA-BR-8297-01 3 58414150 58414150 G A PDHB Intron 0.10 TCGA-BR-8297-01 3 74316425 74316425 C T CNTN3 Missense_Mutation p.G937R 0.04 deleterious(0) probably_damaging(1) TCGA-BR-8297-01 3 7620685 7620685 A G GRM7 Missense_Mutation p.S698G 0.09 deleterious(0) probably_damaging(0.991) TCGA-BR-8297-01 3 78700930 78700930 G A ROBO1 Missense_Mutation p.R922C 0.09 deleterious(0) possibly_damaging(0.732) TCGA-BR-8297-01 3 88039930 88039930 T G HTR1F Missense_Mutation p.L11V 0.19 tolerated(0.53) benign(0.003) TCGA-BR-8297-01 3 88040909 88040909 A C HTR1F Missense_Mutation p.Y337S 0.08 deleterious(0) probably_damaging(1) TCGA-BR-8297-01 3 9985701 9985701 C G CRELD1 Missense_Mutation p.F388L 0.07 tolerated(0.05) benign(0) TCGA-BR-8297-01 4 121958019 121958019 A T NDNF Silent p.S369S 0.06 TCGA-BR-8297-01 4 126372719 126372719 A C FAT4 Missense_Mutation p.E3516D 0.08 possibly_damaging(0.643) TCGA-BR-8297-01 4 126411303 126411303 G T FAT4 Missense_Mutation p.E4442D 0.18 possibly_damaging(0.543) TCGA-BR-8297-01 4 146067479 146067479 T G OTUD4 Missense_Mutation p.E389D 0.08 tolerated(0.11) probably_damaging(0.998) TCGA-BR-8297-01 4 155157044 155157064 TCCAAGGGAGTAAAGAATGAC - DCHS2 In_Frame_Del p.V2459_G2465del 0.14 TCGA-BR-8297-01 4 155219157 155219157 G A DCHS2 Silent p.Y1648Y 0.05 TCGA-BR-8297-01 4 156135632 156135632 A C NPY2R Missense_Mutation p.S181R 0.09 tolerated(0.23) possibly_damaging(0.467) TCGA-BR-8297-01 4 15839770 15839770 A T CD38 Missense_Mutation p.K214I 0.08 tolerated(0.14) benign(0.107) TCGA-BR-8297-01 4 166000876 166000876 C T TMEM192 Silent p.A250A 0.09 TCGA-BR-8297-01 4 166935691 166935691 A G TLL1 Missense_Mutation p.R341G 0.08 deleterious(0.01) possibly_damaging(0.799) TCGA-BR-8297-01 4 38691387 38691388 - A KLF3 Frame_Shift_Ins p.I197Nfs*2 0.19 TCGA-BR-8297-01 4 57182545 57182545 A T KIAA1211 Missense_Mutation p.Q959H 0.12 deleterious(0) benign(0.387) TCGA-BR-8297-01 4 57829541 57829541 T C NOA1 3'UTR 0.15 TCGA-BR-8297-01 4 68956353 68956353 T G TMPRSS11F Missense_Mutation p.K57T 0.10 tolerated(0.26) benign(0.324) TCGA-BR-8297-01 5 131324527 131324527 G A ACSL6 Missense_Mutation p.P208L 0.10 tolerated(0.15) possibly_damaging(0.543) TCGA-BR-8297-01 5 13736033 13736033 G A DNAH5 Missense_Mutation p.R3822W 0.07 possibly_damaging(0.689) TCGA-BR-8297-01 5 140720706 140720706 G A PCDHGA2 Missense_Mutation p.R723H 0.07 tolerated_low_confidence(0.13) benign(0.051) TCGA-BR-8297-01 5 169483732 169483732 C G DOCK2 Missense_Mutation p.P1447R 0.08 deleterious(0.02) probably_damaging(0.993) TCGA-BR-8297-01 5 172750412 172750412 C T STC2 Missense_Mutation p.A106T 0.10 tolerated(0.17) benign(0.056) TCGA-BR-8297-01 5 175916030 175916030 T G FAF2 Splice_Site p.X115_splice 0.17 TCGA-BR-8297-01 5 33937122 33937122 G A RXFP3 Missense_Mutation p.A93T 0.18 deleterious(0.02) possibly_damaging(0.578) TCGA-BR-8297-01 5 79034410 79034410 A C CMYA5 Missense_Mutation p.Q3274H 0.11 benign(0.021) TCGA-BR-8297-01 5 876276 876276 G A BRD9 Silent p.D441D 0.07 TCGA-BR-8297-01 5 9108375 9108375 A G SEMA5A Silent p.C650C 0.20 TCGA-BR-8297-01 6 123957940 123957940 A C TRDN 5'UTR 0.09 TCGA-BR-8297-01 6 129511389 129511389 G A LAMA2 Missense_Mutation p.G503S 0.05 deleterious(0.02) possibly_damaging(0.775) TCGA-BR-8297-01 6 13365511 13365511 G A GFOD1 Nonsense_Mutation p.R213* 0.06 TCGA-BR-8297-01 6 152718078 152718078 A T SYNE1 Missense_Mutation p.L2463H 0.06 probably_damaging(0.995) TCGA-BR-8297-01 6 161158022 161158022 A G PLG Silent p.Q595Q 0.06 TCGA-BR-8297-01 6 163984719 163984719 T G QKI Missense_Mutation p.L301R 0.05 deleterious(0) probably_damaging(0.998) TCGA-BR-8297-01 6 28963505 28963505 C T ZNF311 Missense_Mutation p.S425N 0.17 tolerated(0.07) benign(0.004) TCGA-BR-8297-01 6 3225152 3225152 G A TUBB2B Missense_Mutation p.R391C 0.06 deleterious_low_confidence(0.03) probably_damaging(0.959) TCGA-BR-8297-01 6 36181694 36181694 C T BRPF3 Silent p.P840P 0.06 TCGA-BR-8297-01 6 47847330 47847330 C T PTCHD4 Missense_Mutation p.R417H 0.14 tolerated(0.24) probably_damaging(0.994) TCGA-BR-8297-01 6 56474064 56474064 G A DST Intron 0.12 TCGA-BR-8297-01 7 103207203 103207203 A C RELN Missense_Mutation p.L1531R 0.09 deleterious(0) possibly_damaging(0.475) TCGA-BR-8297-01 7 103275919 103275919 A G RELN Silent p.T806T 0.12 TCGA-BR-8297-01 7 112724143 112724143 G A GPR85 Nonsense_Mutation p.R212* 0.12 TCGA-BR-8297-01 7 121652018 121652018 A C PTPRZ1 Missense_Mutation p.K973T 0.06 deleterious_low_confidence(0.04) benign(0.034) TCGA-BR-8297-01 7 121717962 121717962 G A AASS Silent p.I864I 0.10 TCGA-BR-8297-01 7 122635196 122635196 T C TAS2R16 Missense_Mutation p.T165A 0.05 deleterious(0) probably_damaging(0.958) TCGA-BR-8297-01 7 136700570 136700570 T A CHRM2 Missense_Mutation p.S320T 0.12 tolerated(0.33) benign(0.021) TCGA-BR-8297-01 7 137076050 137076050 A G DGKI Silent p.A1038A 0.05 TCGA-BR-8297-01 7 146741127 146741127 A C CNTNAP2 Missense_Mutation p.E177D 0.13 deleterious(0) probably_damaging(0.996) TCGA-BR-8297-01 7 146997356 146997356 A C CNTNAP2 Missense_Mutation p.K491T 0.14 tolerated(0.74) benign(0.021) TCGA-BR-8297-01 7 150932222 150932222 G A CHPF2 Missense_Mutation p.V118M 0.07 deleterious(0) probably_damaging(0.972) TCGA-BR-8297-01 7 157060400 157060400 G A UBE3C Missense_Mutation p.S1068N 0.07 tolerated(0.37) benign(0.008) TCGA-BR-8297-01 7 21760426 21760426 T G DNAH11 Missense_Mutation p.F2413L 0.19 probably_damaging(0.999) TCGA-BR-8297-01 7 22766798 22766798 G T IL6 Intron 0.24 TCGA-BR-8297-01 7 2946340 2946340 G A CARD11 Missense_Mutation p.R1133C 0.07 deleterious(0) probably_damaging(0.973) TCGA-BR-8297-01 7 31792948 31792948 A C PDE1C 3'UTR 0.12 TCGA-BR-8297-01 7 34182850 34182850 T C BMPER Missense_Mutation p.V585A 0.04 deleterious(0.01) possibly_damaging(0.634) TCGA-BR-8297-01 7 40899936 40899936 A C SUGCT Missense_Mutation p.K425T 0.04 tolerated(0.27) benign(0.015) TCGA-BR-8297-01 7 42116369 42116369 G A GLI3 Missense_Mutation p.P152L 0.10 deleterious(0) probably_damaging(0.999) TCGA-BR-8297-01 7 45753498 45753498 C T ADCY1 Silent p.P1088P 0.06 TCGA-BR-8297-01 7 50459470 50459470 G T IKZF1 Silent p.L211L 0.12 TCGA-BR-8297-01 7 70800597 70800597 G A WBSCR17 Silent p.P100P 0.20 TCGA-BR-8297-01 7 71175770 71175770 T G WBSCR17 Missense_Mutation p.F509V 0.07 tolerated(0.4) benign(0.002) TCGA-BR-8297-01 7 81355304 81355304 G T HGF Missense_Mutation p.P357Q 0.08 deleterious(0) probably_damaging(1) TCGA-BR-8297-01 7 82585193 82585193 A C PCLO Nonsense_Mutation p.Y1692* 0.15 TCGA-BR-8297-01 7 86468784 86468784 T G GRM3 Missense_Mutation p.F652V 0.07 tolerated(0.05) probably_damaging(1) TCGA-BR-8297-01 7 87196226 87196226 A C ABCB1 Missense_Mutation p.F135L 0.06 tolerated(0.29) benign(0.04) TCGA-BR-8297-01 7 93519622 93519622 G A TFPI2 Missense_Mutation p.A33V 0.09 tolerated(0.11) benign(0.039) TCGA-BR-8297-01 8 103327016 103327016 C T UBR5 Missense_Mutation p.C617Y 0.08 deleterious(0) probably_damaging(0.982) TCGA-BR-8297-01 8 104053033 104053033 C G ATP6V1C1 5'UTR 0.07 TCGA-BR-8297-01 8 105263942 105263942 T - RIMS2 Frame_Shift_Del p.F1316Sfs*6 0.11 TCGA-BR-8297-01 8 106800975 106800975 G A ZFPM2 Missense_Mutation p.A188T 0.04 tolerated(0.56) benign(0.001) TCGA-BR-8297-01 8 108334268 108334268 A G ANGPT1 Silent p.L222L 0.07 TCGA-BR-8297-01 8 113585834 113585834 G T CSMD3 Missense_Mutation p.A1313E 0.05 tolerated(0.1) possibly_damaging(0.719) TCGA-BR-8297-01 8 116632000 116632000 T G TRPS1 Missense_Mutation p.N109H 0.05 deleterious_low_confidence(0) possibly_damaging(0.658) TCGA-BR-8297-01 8 124801870 124801870 A G FAM91A1 Silent p.E432E 0.04 TCGA-BR-8297-01 8 144891180 144891180 C A SCRIB Missense_Mutation p.A572S 0.05 possibly_damaging(0.598) TCGA-BR-8297-01 8 22064885 22064885 C T BMP1 Nonsense_Mutation p.R811* 0.23 TCGA-BR-8297-01 8 2807839 2807839 A C CSMD1 Missense_Mutation p.L3410V 0.04 probably_damaging(0.982) TCGA-BR-8297-01 8 41836209 41836209 T C KAT6A Missense_Mutation p.T332A 0.06 benign(0.002) TCGA-BR-8297-01 8 51465669 51465669 T G SNTG1 Missense_Mutation p.L247R 0.10 tolerated(0.35) benign(0.011) TCGA-BR-8297-01 8 69005938 69005938 T C PREX2 Silent p.A783A 0.05 TCGA-BR-8297-01 8 75156979 75156979 G C JPH1 Missense_Mutation p.P564A 0.05 tolerated(0.1) benign(0.033) TCGA-BR-8297-01 8 97797433 97797433 T G CPQ Missense_Mutation p.V103G 0.08 deleterious(0) probably_damaging(0.991) TCGA-BR-8297-01 9 114997138 114997138 G A PTBP3 Missense_Mutation p.A315V 0.09 tolerated(0.27) benign(0.019) TCGA-BR-8297-01 9 119462018 119462018 G A TRIM32 3'UTR 0.15 TCGA-BR-8297-01 9 120475898 120475898 T G TLR4 Missense_Mutation p.L498V 0.16 deleterious(0) probably_damaging(0.999) TCGA-BR-8297-01 9 122075621 122075621 A C BRINP1 Missense_Mutation p.F5V 0.09 tolerated_low_confidence(0.69) benign(0.018) TCGA-BR-8297-01 9 134305594 134305594 C G PRRC2B Silent p.L21L 0.25 TCGA-BR-8297-01 9 135762799 135762799 G A C9orf9 Missense_Mutation p.R63Q 0.29 deleterious(0.03) benign(0.017) TCGA-BR-8297-01 9 139265018 139265018 C T CARD9 Missense_Mutation p.A255T 0.31 deleterious(0.05) benign(0.002) TCGA-BR-8297-01 9 21077392 21077392 G C IFNB1 Nonsense_Mutation p.Y159* 0.07 TCGA-BR-8297-01 9 32633779 32633779 C T TAF1L Missense_Mutation p.R600Q 0.31 tolerated(0.1) benign(0.023) TCGA-BR-8297-01 9 73424915 73424915 C A TRPM3 Intron 0.07 TCGA-BR-8297-01 9 75450910 75450910 A - TMC1 3'UTR 0.28 TCGA-BR-8297-01 9 77300519 77300519 C T RORB Silent p.A455A 0.08 TCGA-BR-8297-01 9 79320386 79320386 A G PRUNE2 Silent p.D2268D 0.19 TCGA-BR-8297-01 9 991019 991019 G C DMRT3 3'UTR 0.05 TCGA-BR-8297-01 X 101970603 101970603 G C GPRASP2 Missense_Mutation p.R269T 0.21 deleterious(0.03) benign(0.046) TCGA-BR-8297-01 X 105281009 105281009 A C SERPINA7 Missense_Mutation p.L14R 0.08 deleterious(0) probably_damaging(0.996) TCGA-BR-8297-01 X 109696914 109696914 T G RGAG1 Silent p.A1023A 0.08 TCGA-BR-8297-01 X 127185305 127185305 A C ACTRT1 Missense_Mutation p.L294R 0.07 deleterious(0) benign(0.23) TCGA-BR-8297-01 X 140785619 140785619 T C SPANXD 3'UTR 0.07 TCGA-BR-8297-01 X 48759272 48759272 A G PQBP1 Missense_Mutation p.N82S 0.06 tolerated(0.84) benign(0.001) TCGA-BR-8297-01 X 51487269 51487269 A G GSPT2 Missense_Mutation p.K183E 0.09 tolerated(1) benign(0.001) TCGA-BR-8297-01 X 70360572 70360572 A T MED12 Silent p.S2044S 0.21 TCGA-BR-8297-01 X 75004270 75004270 A G MAGEE2 Missense_Mutation p.V206A 0.15 deleterious(0) benign(0.017) TCGA-BR-8297-01 X 86877393 86877393 T C KLHL4 Silent p.S369S 0.28 TCGA-BR-8360-01 10 101645575 101645575 C T DNMBP Missense_Mutation p.E1223K 0.18 deleterious(0.01) possibly_damaging(0.893) TCGA-BR-8360-01 10 101996719 101996719 G T CWF19L1 Missense_Mutation p.P421H 0.19 deleterious(0) probably_damaging(0.946) TCGA-BR-8360-01 10 103342587 103342587 C T POLL Missense_Mutation p.G376D 0.22 deleterious(0) probably_damaging(1) TCGA-BR-8360-01 10 103716445 103716445 G A C10orf76 Silent p.G538G 0.38 TCGA-BR-8360-01 10 103990802 103990802 G T PITX3 Silent p.A126A 0.50 TCGA-BR-8360-01 10 104248022 104248022 C T ACTR1A Missense_Mutation p.G67E 0.20 deleterious(0) probably_damaging(1) TCGA-BR-8360-01 10 105200319 105200319 G A PDCD11 Missense_Mutation p.R1474Q 0.39 tolerated(0.66) benign(0.002) TCGA-BR-8360-01 10 105209370 105209370 G A CALHM2 Missense_Mutation p.A110V 0.35 deleterious(0) possibly_damaging(0.882) TCGA-BR-8360-01 10 106075480 106075480 C - ITPRIP Frame_Shift_Del p.S112Hfs*64 0.14 TCGA-BR-8360-01 10 112258051 112258051 G A DUSP5 Missense_Mutation p.G58S 0.31 tolerated(0.26) benign(0.277) TCGA-BR-8360-01 10 112838242 112838242 G A ADRA2A Missense_Mutation p.R163H 0.35 deleterious(0) probably_damaging(0.994) TCGA-BR-8360-01 10 118117366 118117366 A G CCDC172 Missense_Mutation p.N190S 0.25 tolerated(0.77) benign(0.124) TCGA-BR-8360-01 10 119014792 119014792 C - SLC18A2 Frame_Shift_Del p.F238Sfs*48 0.30 TCGA-BR-8360-01 10 120801712 120801712 C T EIF3A Missense_Mutation p.R1107Q 0.28 deleterious_low_confidence(0) benign(0.238) TCGA-BR-8360-01 10 123845520 123845520 G A TACC2 Missense_Mutation p.G1169R 0.06 benign(0.017) TCGA-BR-8360-01 10 125506170 125506170 G A CPXM2 3'UTR 0.33 TCGA-BR-8360-01 10 125805494 125805494 G A CHST15 Nonsense_Mutation p.R79* 0.35 TCGA-BR-8360-01 10 126097148 126097148 C T OAT Silent p.K161K 0.27 TCGA-BR-8360-01 10 13325835 13325835 C - PHYH Frame_Shift_Del p.G228Efs*22 0.26 TCGA-BR-8360-01 10 134941863 134941863 C T GPR123 Silent p.G177G 0.33 TCGA-BR-8360-01 10 135020656 135020656 C T KNDC1 Missense_Mutation p.R1199C 0.33 deleterious(0.02) possibly_damaging(0.772) TCGA-BR-8360-01 10 135099117 135099117 G T TUBGCP2 Missense_Mutation p.H608N 0.24 deleterious(0.01) benign(0.257) TCGA-BR-8360-01 10 16528558 16528558 C T PTER Nonsense_Mutation p.R214* 0.20 TCGA-BR-8360-01 10 16955916 16955916 C T CUBN Missense_Mutation p.R2476Q 0.15 deleterious(0.01) benign(0) TCGA-BR-8360-01 10 24873306 24873307 - T ARHGAP21 3'UTR 0.29 TCGA-BR-8360-01 10 29710450 29710450 T C PTCHD3P1 RNA 0.31 TCGA-BR-8360-01 10 30315148 30315148 C T KIAA1462 Missense_Mutation p.R1310H 0.32 tolerated(0.15) benign(0.201) TCGA-BR-8360-01 10 30739267 30739267 C T MAP3K8 Silent p.G195G 0.28 TCGA-BR-8360-01 10 38121593 38121593 A - ZNF248 Frame_Shift_Del p.F230Lfs*8 0.24 TCGA-BR-8360-01 10 395273 395273 G - DIP2C Frame_Shift_Del p.P1036Qfs*3 0.15 TCGA-BR-8360-01 10 43088761 43088761 G A ZNF33B Missense_Mutation p.T546M 0.36 deleterious(0.05) benign(0.037) TCGA-BR-8360-01 10 44141585 44141585 C A ZNF32 5'UTR 0.23 TCGA-BR-8360-01 10 468915 468915 G - DIP2C Frame_Shift_Del p.T152Pfs*50 0.26 TCGA-BR-8360-01 10 47087582 47087582 C T NPY4R Silent p.L267L 0.14 TCGA-BR-8360-01 10 50819360 50819360 G A SLC18A3 Missense_Mutation p.A192T 0.39 deleterious(0) probably_damaging(1) TCGA-BR-8360-01 10 50819836 50819836 G A SLC18A3 Silent p.A350A 0.26 TCGA-BR-8360-01 10 51754188 51754188 A G AGAP6 Missense_Mutation p.H132R 0.06 deleterious_low_confidence(0.03) benign(0.012) TCGA-BR-8360-01 10 52610559 52610580 TCTAAATTCCTTTCAAGAAGTA - A1CF Splice_Site 0.30 TCGA-BR-8360-01 10 6063591 6063591 C A IL2RA Missense_Mutation p.G145W 0.30 deleterious(0) probably_damaging(1) TCGA-BR-8360-01 10 68687864 68687864 C T LRRTM3 Missense_Mutation p.P397L 0.40 tolerated(0.18) benign(0.023) TCGA-BR-8360-01 10 71899576 71899576 C T TYSND1 3'UTR 0.21 TCGA-BR-8360-01 10 72511878 72511878 G T ADAMTS14 Missense_Mutation p.R878L 0.26 deleterious(0.01) possibly_damaging(0.519) TCGA-BR-8360-01 10 72636413 72636413 G T SGPL1 Nonsense_Mutation p.G521* 0.32 TCGA-BR-8360-01 10 7269822 7269822 G A SFMBT2 Nonsense_Mutation p.R400* 0.35 TCGA-BR-8360-01 10 73047450 73047450 G A UNC5B Missense_Mutation p.A277T 0.32 tolerated(0.17) benign(0.078) TCGA-BR-8360-01 10 73337742 73337742 C A CDH23 Silent p.I275I 0.42 TCGA-BR-8360-01 10 73537990 73537990 C T C10orf54 5'Flank 0.23 TCGA-BR-8360-01 10 75239252 75239252 G A PPP3CB Missense_Mutation p.R37C 0.21 tolerated(0.12) benign(0.028) TCGA-BR-8360-01 10 75407549 75407549 T C SYNPO2L Missense_Mutation p.T621A 0.30 deleterious(0) probably_damaging(0.986) TCGA-BR-8360-01 10 76855437 76855437 A G DUSP13 Missense_Mutation p.L147P 0.28 deleterious(0) probably_damaging(0.911) TCGA-BR-8360-01 10 79579711 79579711 C T DLG5 Silent p.S1156S 0.28 TCGA-BR-8360-01 10 82122250 82122250 A G DYDC2 Silent p.A31A 0.28 TCGA-BR-8360-01 10 82126484 82126484 T G DYDC2 Missense_Mutation p.F118C 0.24 deleterious(0.04) probably_damaging(0.957) TCGA-BR-8360-01 10 86132141 86132141 C T CCSER2 Missense_Mutation p.P445S 0.43 tolerated(0.2) benign(0.009) TCGA-BR-8360-01 10 87406989 87406989 G A GRID1 Silent p.C721C 0.29 TCGA-BR-8360-01 10 88428410 88428410 T A LDB3 Intron 0.17 TCGA-BR-8360-01 10 88718411 88718411 C A SNCG 5'Flank 0.33 TCGA-BR-8360-01 10 92508761 92508761 G A HTR7 Missense_Mutation p.S377F 0.29 deleterious(0) probably_damaging(0.999) TCGA-BR-8360-01 10 94834167 94834167 C T CYP26A1 Missense_Mutation p.R98W 0.16 deleterious(0) probably_damaging(0.999) TCGA-BR-8360-01 10 95069859 95069859 C T MYOF Missense_Mutation p.R2022H 0.30 deleterious(0) probably_damaging(0.953) TCGA-BR-8360-01 10 95445078 95445079 - T FRA10AC1 Frame_Shift_Ins p.E184Rfs*9 0.21 TCGA-BR-8360-01 10 95791574 95791574 C T PLCE1 Silent p.D257D 0.30 TCGA-BR-8360-01 10 97779061 97779061 A - CC2D2B Frame_Shift_Del p.S210Vfs*2 0.25 TCGA-BR-8360-01 10 98127805 98127805 A - TLL2 3'UTR 0.44 TCGA-BR-8360-01 10 99371277 99371277 G A HOGA1 Missense_Mutation p.R282H 0.29 deleterious(0.02) benign(0.011) TCGA-BR-8360-01 11 103814312 103814312 T - PDGFD Frame_Shift_Del p.I214Lfs*68 0.33 TCGA-BR-8360-01 11 104872817 104872817 T C CASP5 Missense_Mutation p.M232V 0.22 deleterious(0) probably_damaging(0.993) TCGA-BR-8360-01 11 105880739 105880739 A - MSANTD4 Frame_Shift_Del p.F187Lfs*19 0.09 TCGA-BR-8360-01 11 105924527 105924527 T C KBTBD3 Missense_Mutation p.I297V 0.31 tolerated(0.43) benign(0.132) TCGA-BR-8360-01 11 111594498 111594498 G A SIK2 Missense_Mutation p.R809Q 0.29 tolerated_low_confidence(0.86) benign(0) TCGA-BR-8360-01 11 112064635 112064635 G A BCO2 Missense_Mutation p.R184Q 0.24 tolerated(0.44) benign(0.003) TCGA-BR-8360-01 11 113104031 113104031 C A NCAM1 Missense_Mutation p.A611D 0.25 deleterious(0.04) probably_damaging(0.996) TCGA-BR-8360-01 11 113105886 113105886 C T NCAM1 Nonsense_Mutation p.Q658* 0.28 TCGA-BR-8360-01 11 115047097 115047097 A - CADM1 3'UTR 0.22 TCGA-BR-8360-01 11 118827066 118827067 - C UPK2 Frame_Shift_Ins p.L4Pfs*64 0.18 TCGA-BR-8360-01 11 118827661 118827661 C - UPK2 Frame_Shift_Del p.C51Vfs*10 0.24 TCGA-BR-8360-01 11 119230349 119230349 G A USP2 Nonsense_Mutation p.Q283* 0.28 TCGA-BR-8360-01 11 120008124 120008124 C T TRIM29 Missense_Mutation p.A206T 0.28 tolerated(0.11) probably_damaging(0.999) TCGA-BR-8360-01 11 120980130 120980130 G A TECTA Missense_Mutation p.A137T 0.29 tolerated_low_confidence(0.7) benign(0.004) TCGA-BR-8360-01 11 121393349 121393349 C A SORL1 Missense_Mutation p.L487I 0.31 tolerated(0.89) benign(0.002) TCGA-BR-8360-01 11 12246337 12246337 C T MICAL2 Missense_Mutation p.A553V 0.39 deleterious(0) probably_damaging(0.999) TCGA-BR-8360-01 11 124742441 124742441 A C ROBO3 Silent p.I441I 0.25 TCGA-BR-8360-01 11 13398237 13398237 C - ARNTL Frame_Shift_Del p.H460Tfs*35 0.24 TCGA-BR-8360-01 11 134109914 134109914 G A VPS26B Missense_Mutation p.R137H 0.27 deleterious(0.01) benign(0.111) TCGA-BR-8360-01 11 1774718 1774718 C T CTSD 3'UTR 0.09 TCGA-BR-8360-01 11 20099098 20099098 G A NAV2 Missense_Mutation p.A1718T 0.24 deleterious(0) probably_damaging(0.996) TCGA-BR-8360-01 11 20177883 20177883 C A DBX1 Silent p.P342P 0.32 TCGA-BR-8360-01 11 281325 281325 C T NLRP6 Missense_Mutation p.R531C 0.29 tolerated(0.23) benign(0.003) TCGA-BR-8360-01 11 30358285 30358285 G A ARL14EP Silent p.L242L 0.32 TCGA-BR-8360-01 11 36511299 36511299 G A TRAF6 3'UTR 0.24 TCGA-BR-8360-01 11 36520186 36520186 C T TRAF6 Missense_Mutation p.A101T 0.26 tolerated(0.42) probably_damaging(0.988) TCGA-BR-8360-01 11 45927354 45927354 T C MAPK8IP1 3'UTR 0.25 TCGA-BR-8360-01 11 4661386 4661386 C T OR51D1 Silent p.A122A 0.27 TCGA-BR-8360-01 11 47593071 47593071 C T PTPMT1 Missense_Mutation p.R166W 0.30 deleterious(0) probably_damaging(1) TCGA-BR-8360-01 11 48239199 48239199 C T OR4B1 Silent p.L280L 0.17 TCGA-BR-8360-01 11 49974661 49974661 G T OR4C13 Missense_Mutation p.E229D 0.31 deleterious_low_confidence(0.02) benign(0.327) TCGA-BR-8360-01 11 5443929 5443929 C T OR51Q1 Nonsense_Mutation p.R167* 0.17 TCGA-BR-8360-01 11 55762042 55762042 C T OR5F1 Silent p.T20T 0.18 TCGA-BR-8360-01 11 56409703 56409703 G T OR5AP2 Missense_Mutation p.S71R 0.30 deleterious(0.03) benign(0.421) TCGA-BR-8360-01 11 57118321 57118321 G A P2RX3 Missense_Mutation p.R264Q 0.36 deleterious(0.01) probably_damaging(0.995) TCGA-BR-8360-01 11 57314092 57314092 G A SMTNL1 Missense_Mutation p.R454Q 0.30 tolerated(0.05) possibly_damaging(0.885) TCGA-BR-8360-01 11 57886281 57886281 G A OR9I1 Silent p.S212S 0.05 TCGA-BR-8360-01 11 5842064 5842064 C T OR52N2 Missense_Mutation p.R167C 0.25 deleterious(0.03) benign(0.052) TCGA-BR-8360-01 11 58714625 58714625 C A GLYATL1 Intron 0.24 TCGA-BR-8360-01 11 59939504 59939504 T - MS4A6A 3'Flank 0.33 TCGA-BR-8360-01 11 60666067 60666067 T C PRPF19 Silent p.G362G 0.26 TCGA-BR-8360-01 11 61110303 61110303 C T DAK Silent p.T284T 0.33 TCGA-BR-8360-01 11 61290643 61290643 G A SYT7 Silent p.F412F 0.26 TCGA-BR-8360-01 11 61624930 61624930 G C FADS2 Silent p.G270G 0.34 TCGA-BR-8360-01 11 62554088 62554088 T C TAF6L Missense_Mutation p.W397R 0.40 tolerated(0.35) possibly_damaging(0.641) TCGA-BR-8360-01 11 62677507 62677509 AGA - CHRM1 In_Frame_Del p.F355del 0.27 TCGA-BR-8360-01 11 63992155 63992155 G A TRPT1 Missense_Mutation p.P123L 0.15 tolerated(0.05) benign(0.035) TCGA-BR-8360-01 11 64359362 64359362 G A SLC22A12 Missense_Mutation p.D112N 0.53 tolerated(0.4) benign(0.003) TCGA-BR-8360-01 11 65088566 65088566 C T CDC42EP2 Missense_Mutation p.P66L 0.43 deleterious(0) probably_damaging(1) TCGA-BR-8360-01 11 6520071 6520071 C T DNHD1 Missense_Mutation p.A209V 0.37 benign(0.04) TCGA-BR-8360-01 11 65266672 65266672 T - MALAT1 RNA 0.12 TCGA-BR-8360-01 11 65348778 65348778 C T EHBP1L1 Missense_Mutation p.A267V 0.27 tolerated(0.07) possibly_damaging(0.835) TCGA-BR-8360-01 11 65375538 65375538 A - MAP3K11 Frame_Shift_Del p.F308Lfs*9 0.16 TCGA-BR-8360-01 11 65617684 65617684 G A SNX32 Missense_Mutation p.E106K 0.31 deleterious(0.02) probably_damaging(0.966) TCGA-BR-8360-01 11 66108741 66108741 G A BRMS1 Silent p.A98A 0.25 TCGA-BR-8360-01 11 66131818 66131818 G A SLC29A2 Silent p.H379H 0.25 TCGA-BR-8360-01 11 6622758 6622758 G A RRP8 Missense_Mutation p.P180S 0.17 tolerated(0.3) benign(0.01) TCGA-BR-8360-01 11 67051203 67051203 T C ADRBK1 Missense_Mutation p.F452L 0.27 deleterious(0.02) probably_damaging(0.998) TCGA-BR-8360-01 11 67223594 67223594 A G CABP4 Intron 0.23 TCGA-BR-8360-01 11 70338494 70338494 C T SHANK2 Silent p.A796A 0.31 TCGA-BR-8360-01 11 71712726 71712726 A - IL18BP Intron 0.29 TCGA-BR-8360-01 11 72408052 72408052 G A ARAP1 Missense_Mutation p.R1048C 0.33 tolerated(0.16) benign(0.068) TCGA-BR-8360-01 11 73021527 73021527 C - ARHGEF17 Frame_Shift_Del p.P617Lfs*10 0.24 TCGA-BR-8360-01 11 7324372 7324372 G A SYT9 Missense_Mutation p.R83Q 0.32 deleterious(0.02) benign(0.032) TCGA-BR-8360-01 11 74800161 74800161 G - OR2AT4 Frame_Shift_Del p.Q200Rfs*37 0.19 TCGA-BR-8360-01 11 77728068 77728068 G A KCTD14 Silent p.Y113Y 0.29 TCGA-BR-8360-01 11 78440668 78440668 A G TENM4 Silent p.S1053S 0.35 TCGA-BR-8360-01 11 7847414 7847414 C T OR5P3 Missense_Mutation p.V36I 0.23 tolerated(0.28) benign(0.002) TCGA-BR-8360-01 11 788426 788426 G A CEND1 Missense_Mutation p.P51S 0.30 tolerated_low_confidence(0.08) benign(0.108) TCGA-BR-8360-01 11 824058 824058 C A PNPLA2 Missense_Mutation p.P327H 0.67 deleterious(0) probably_damaging(0.98) TCGA-BR-8360-01 11 82879875 82879875 G A PCF11 Missense_Mutation p.R833Q 0.24 tolerated(0.12) possibly_damaging(0.714) TCGA-BR-8360-01 11 85445089 85445089 A - SYTL2 Frame_Shift_Del p.L427* 0.23 TCGA-BR-8360-01 11 86662733 86662733 G A FZD4 Silent p.P355P 0.26 TCGA-BR-8360-01 11 8752691 8752691 T A ST5 Missense_Mutation p.D49V 0.26 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-BR-8360-01 11 93088580 93088580 A G CCDC67 Missense_Mutation p.I25V 0.05 tolerated(0.06) probably_damaging(0.995) TCGA-BR-8360-01 11 94040602 94040602 G T FOLR4 Missense_Mutation p.C159F 0.37 deleterious(0) probably_damaging(0.991) TCGA-BR-8360-01 11 9603177 9603177 T - WEE1 Frame_Shift_Del p.L414* 0.22 TCGA-BR-8360-01 12 104015889 104015889 G T STAB2 Missense_Mutation p.V163L 0.28 deleterious(0.02) benign(0.069) TCGA-BR-8360-01 12 104121068 104121068 C T STAB2 Silent p.V1625V 0.30 TCGA-BR-8360-01 12 108128295 108128295 G A PRDM4 Missense_Mutation p.R700C 0.28 deleterious(0) probably_damaging(0.91) TCGA-BR-8360-01 12 108134747 108134747 G A PRDM4 Missense_Mutation p.R634W 0.27 deleterious(0) probably_damaging(0.998) TCGA-BR-8360-01 12 10978047 10978047 T G TAS2R10 Silent p.S274S 0.26 TCGA-BR-8360-01 12 110293442 110293442 G A GLTP Silent p.I143I 0.21 TCGA-BR-8360-01 12 11034940 11034940 C G PRH1 Missense_Mutation p.G132A 0.20 deleterious_low_confidence(0) unknown(0) TCGA-BR-8360-01 12 11091290 11091290 T C TAS2R14 Missense_Mutation p.T173A 0.35 tolerated(0.86) benign(0.006) TCGA-BR-8360-01 12 110929784 110929785 - A VPS29 3'UTR 0.12 TCGA-BR-8360-01 12 111158936 111158936 G T PPP1CC Missense_Mutation p.A306D 0.24 tolerated_low_confidence(0.06) benign(0.091) TCGA-BR-8360-01 12 111884789 111884789 A G SH2B3 Missense_Mutation p.Q293R 0.27 deleterious(0) probably_damaging(0.996) TCGA-BR-8360-01 12 112186136 112186136 G A ACAD10 Missense_Mutation p.R865H 0.21 tolerated(0.1) possibly_damaging(0.706) TCGA-BR-8360-01 12 112650376 112650376 T C HECTD4 Missense_Mutation p.Y2369C 0.45 probably_damaging(0.988) TCGA-BR-8360-01 12 119594447 119594447 A C SRRM4 Missense_Mutation p.R560S 0.42 tolerated_low_confidence(1) unknown(0) TCGA-BR-8360-01 12 120208707 120208707 C T CIT Missense_Mutation p.R697H 0.27 tolerated(0.08) possibly_damaging(0.904) TCGA-BR-8360-01 12 120636777 120636777 G T RPLP0 Silent p.A115A 0.29 TCGA-BR-8360-01 12 120795616 120795616 C T MSI1 Intron 0.25 TCGA-BR-8360-01 12 121002881 121002881 C T RNF10 Nonsense_Mutation p.R558* 0.32 TCGA-BR-8360-01 12 122386901 122386901 T - WDR66 Frame_Shift_Del p.F402Lfs*10 0.21 TCGA-BR-8360-01 12 123214918 123214918 G T HCAR1 5'UTR 0.55 TCGA-BR-8360-01 12 123782547 123782547 C T SBNO1 Silent p.T1339T 0.25 TCGA-BR-8360-01 12 125397684 125397684 T C UBC Missense_Mutation p.N212D 0.18 deleterious(0.01) benign(0.295) TCGA-BR-8360-01 12 125420383 125420383 T C RPL22P19 RNA 0.75 TCGA-BR-8360-01 12 132632428 132632428 C - NOC4L Frame_Shift_Del p.A205Pfs*13 0.35 TCGA-BR-8360-01 12 133331306 133331306 A G ANKLE2 Missense_Mutation p.Y199H 0.27 deleterious(0) probably_damaging(0.969) TCGA-BR-8360-01 12 14944192 14944192 C T WBP11 Missense_Mutation p.R309Q 0.27 tolerated_low_confidence(0.08) unknown(0) TCGA-BR-8360-01 12 14975984 14975984 C T C12orf60 Missense_Mutation p.R39C 0.19 tolerated(0.06) benign(0.001) TCGA-BR-8360-01 12 1992068 1992068 C T CACNA2D4 Missense_Mutation p.D484N 0.19 deleterious(0.04) benign(0.266) TCGA-BR-8360-01 12 20766597 20766597 A T PDE3A Missense_Mutation p.E411V 0.24 deleterious(0) probably_damaging(0.978) TCGA-BR-8360-01 12 21391984 21391984 C T SLCO1B1 Missense_Mutation p.A646V 0.19 tolerated(0.51) benign(0.005) TCGA-BR-8360-01 12 21428275 21428275 A - SLCO1A2 Intron 0.32 TCGA-BR-8360-01 12 22035805 22035805 C A ABCC9 Missense_Mutation p.Q638H 0.32 tolerated(0.39) benign(0.001) TCGA-BR-8360-01 12 25671789 25671789 C T IFLTD1 Missense_Mutation p.A377T 0.26 tolerated(1) benign(0.005) TCGA-BR-8360-01 12 26640149 26640150 - T ITPR2 Frame_Shift_Ins p.S1803Vfs*6 0.21 TCGA-BR-8360-01 12 31604972 31604973 - A DENND5B Frame_Shift_Ins p.T511Yfs*32 0.25 TCGA-BR-8360-01 12 46245344 46245344 G A ARID2 Silent p.S1146S 0.28 TCGA-BR-8360-01 12 49438211 49438211 T - KMT2D Frame_Shift_Del p.K1686Nfs*36 0.23 TCGA-BR-8360-01 12 49935520 49935520 G - KCNH3 Frame_Shift_Del p.G141Afs*67 0.26 TCGA-BR-8360-01 12 5021641 5021641 C T KCNA1 Missense_Mutation p.A366V 0.15 deleterious(0) probably_damaging(0.998) TCGA-BR-8360-01 12 5021769 5021769 T A KCNA1 Missense_Mutation p.S409T 0.27 tolerated(0.07) probably_damaging(0.961) TCGA-BR-8360-01 12 50501526 50501526 T C GPD1 Silent p.T263T 0.04 TCGA-BR-8360-01 12 53413753 53413753 T C EIF4B Silent p.G140G 0.23 TCGA-BR-8360-01 12 53701391 53701391 C - AAAS Frame_Shift_Del p.G508Vfs*43 0.25 TCGA-BR-8360-01 12 56915752 56915752 C T RBMS2 5'UTR 0.33 TCGA-BR-8360-01 12 57398126 57398126 G A ZBTB39 Silent p.D192D 0.33 TCGA-BR-8360-01 12 57570998 57570998 C A LRP1 Missense_Mutation p.P1389Q 0.32 probably_damaging(0.997) TCGA-BR-8360-01 12 58162893 58162893 C A METTL1 Missense_Mutation p.E239D 0.18 deleterious(0) possibly_damaging(0.812) TCGA-BR-8360-01 12 59272641 59272641 C T LRIG3 Missense_Mutation p.G683E 0.27 deleterious(0) probably_damaging(1) TCGA-BR-8360-01 12 66814553 66814553 T G GRIP1 Missense_Mutation p.K543N 0.29 deleterious(0.04) probably_damaging(0.939) TCGA-BR-8360-01 12 6687228 6687228 C A CHD4 Missense_Mutation p.R1732L 0.24 deleterious(0.02) probably_damaging(0.992) TCGA-BR-8360-01 12 6692034 6692034 G A CHD4 Missense_Mutation p.R1406C 0.26 deleterious(0.02) probably_damaging(0.965) TCGA-BR-8360-01 12 6749371 6749371 C T ACRBP Missense_Mutation p.R427H 0.29 tolerated(0.19) benign(0.003) TCGA-BR-8360-01 12 70948972 70948972 T A PTPRB Missense_Mutation p.K1704I 0.35 deleterious(0) probably_damaging(0.996) TCGA-BR-8360-01 12 71286586 71286586 C T PTPRR Missense_Mutation p.R77H 0.27 tolerated_low_confidence(0.31) benign(0) TCGA-BR-8360-01 12 7303159 7303159 G A CLSTN3 Silent p.V755V 0.29 TCGA-BR-8360-01 12 7842978 7842978 A T GDF3 Missense_Mutation p.N197K 0.25 deleterious(0.01) possibly_damaging(0.753) TCGA-BR-8360-01 12 81102715 81102715 C T MYF6 Silent p.C235C 0.25 TCGA-BR-8360-01 12 88443060 88443060 T - CEP290 Frame_Shift_Del p.K2447Nfs*10 0.23 TCGA-BR-8360-01 12 96292432 96292432 T - CCDC38 Frame_Shift_Del p.A150Qfs*24 0.21 TCGA-BR-8360-01 13 108518596 108518596 C T FAM155A Missense_Mutation p.A117T 0.50 tolerated_low_confidence(0.19) benign(0.007) TCGA-BR-8360-01 13 111176500 111176500 C - RAB20 Frame_Shift_Del p.A73Rfs*10 0.21 TCGA-BR-8360-01 13 113740490 113740490 C T MCF2L Missense_Mutation p.A767V 0.16 deleterious(0) possibly_damaging(0.852) TCGA-BR-8360-01 13 114312428 114312428 C T ATP4B Missense_Mutation p.G11D 0.22 deleterious(0.01) benign(0.289) TCGA-BR-8360-01 13 114504642 114504642 G A TMEM255B Missense_Mutation p.A176T 0.31 tolerated(0.47) benign(0.022) TCGA-BR-8360-01 13 21437114 21437114 T - XPO4 Intron 0.24 TCGA-BR-8360-01 13 22141028 22141028 C T MICU2 Missense_Mutation p.R89H 0.35 deleterious(0) probably_damaging(0.999) TCGA-BR-8360-01 13 25030500 25030500 T - PARP4 Frame_Shift_Del p.K847Nfs*25 0.25 TCGA-BR-8360-01 13 25265211 25265211 G A ATP12A Silent p.T303T 0.38 TCGA-BR-8360-01 13 25882001 25882001 T C NUPL1 Silent p.T55T 0.24 TCGA-BR-8360-01 13 29855999 29855999 G A MTUS2 Missense_Mutation p.A945T 0.32 tolerated(0.05) benign(0.07) TCGA-BR-8360-01 13 33338694 33338694 A - PDS5B Frame_Shift_Del p.S1198Vfs*10 0.26 TCGA-BR-8360-01 13 43930092 43930092 C T ENOX1 Silent p.S262S 0.26 TCGA-BR-8360-01 13 45983139 45983139 C A SLC25A30 Missense_Mutation p.K45N 0.07 tolerated(0.15) benign(0.021) TCGA-BR-8360-01 13 46543661 46543661 T - ZC3H13 Frame_Shift_Del p.K1006Nfs*31 0.34 TCGA-BR-8360-01 13 53422116 53422116 C T PCDH8 Silent p.T152T 0.15 TCGA-BR-8360-01 13 77844149 77844149 T - MYCBP2 Frame_Shift_Del p.K375Sfs*4 0.22 TCGA-BR-8360-01 13 84455642 84455642 T - SLITRK1 Frame_Shift_Del p.M1? 0.22 TCGA-BR-8360-01 13 88330333 88330333 G A SLITRK5 Missense_Mutation p.R897H 0.31 deleterious(0.03) benign(0.015) TCGA-BR-8360-01 13 99338492 99338492 G A SLC15A1 Silent p.G629G 0.16 TCGA-BR-8360-01 14 100119154 100119154 C T HHIPL1 Silent p.S283S 0.44 TCGA-BR-8360-01 14 101490146 101490146 G A MIR299 RNA 0.44 TCGA-BR-8360-01 14 101518829 101518829 C T MIR487A RNA 0.24 TCGA-BR-8360-01 14 20842664 20842664 A G TEP1 Missense_Mutation p.L2132P 0.35 deleterious(0) probably_damaging(0.992) TCGA-BR-8360-01 14 21464375 21464375 A G METTL17 Missense_Mutation p.H335R 0.16 deleterious(0.02) possibly_damaging(0.654) TCGA-BR-8360-01 14 21820849 21820850 - G SUPT16H Frame_Shift_Ins p.K1043Qfs*13 0.28 TCGA-BR-8360-01 14 21833073 21833073 T C SUPT16H Silent p.G382G 0.17 TCGA-BR-8360-01 14 23392040 23392040 T C PRMT5 Missense_Mutation p.Q497R 0.44 tolerated(0.07) benign(0.021) TCGA-BR-8360-01 14 24034752 24034752 G C AP1G2 Intron 0.35 TCGA-BR-8360-01 14 24534215 24534215 G A LRRC16B Silent p.P1043P 0.36 TCGA-BR-8360-01 14 24619997 24619997 G A RNF31 Missense_Mutation p.R463Q 0.37 tolerated(0.66) benign(0.001) TCGA-BR-8360-01 14 25042973 25042973 C G CTSG Missense_Mutation p.G213A 0.30 deleterious(0.03) possibly_damaging(0.862) TCGA-BR-8360-01 14 31554158 31554158 G A AP4S1 3'UTR 0.38 TCGA-BR-8360-01 14 31856515 31856515 A - HEATR5A Frame_Shift_Del p.S41Lfs*4 0.20 TCGA-BR-8360-01 14 35245127 35245128 - A BAZ1A Frame_Shift_Ins p.S944Ffs*7 0.21 TCGA-BR-8360-01 14 39722040 39722040 G A MIA2 Silent p.S552S 0.30 TCGA-BR-8360-01 14 42356114 42356114 G A LRFN5 Missense_Mutation p.A96T 0.38 tolerated(0.07) benign(0.055) TCGA-BR-8360-01 14 50616749 50616749 T C SOS2 Silent p.T787T 0.35 TCGA-BR-8360-01 14 54417102 54417102 C T BMP4 Missense_Mutation p.R292H 0.27 deleterious(0) probably_damaging(1) TCGA-BR-8360-01 14 56757067 56757067 G - PELI2 Frame_Shift_Del p.G198Afs*73 0.24 TCGA-BR-8360-01 14 57863536 57863536 C T NAA30 Missense_Mutation p.R280C 0.26 tolerated(0.05) benign(0.151) TCGA-BR-8360-01 14 60582091 60582091 G A PCNXL4 Silent p.P189P 0.27 TCGA-BR-8360-01 14 61446378 61446378 G A TRMT5 Nonsense_Mutation p.R80* 0.21 TCGA-BR-8360-01 14 62567283 62567283 G A SYT16 Missense_Mutation p.R599H 0.32 deleterious(0.01) probably_damaging(0.997) TCGA-BR-8360-01 14 64469920 64469920 T G SYNE2 Silent p.T1423T 0.29 TCGA-BR-8360-01 14 64988802 64988802 A - ZBTB1 Frame_Shift_Del p.S196Vfs*36 0.21 TCGA-BR-8360-01 14 67578617 67578617 C T GPHN Missense_Mutation p.R485W 0.29 deleterious(0) probably_damaging(0.999) TCGA-BR-8360-01 14 73718836 73718836 G A PAPLN Silent p.A291A 0.42 TCGA-BR-8360-01 14 73989272 73989272 A G HEATR4 Silent p.P195P 0.19 TCGA-BR-8360-01 14 74205773 74205773 G - ELMSAN1 Frame_Shift_Del p.N314Tfs*4 0.29 TCGA-BR-8360-01 14 74823805 74823805 C T VRTN Missense_Mutation p.R107C 0.23 deleterious(0) probably_damaging(0.998) TCGA-BR-8360-01 14 74978021 74978021 G A LTBP2 Silent p.C985C 0.28 TCGA-BR-8360-01 14 75230562 75230562 A - YLPM1 Frame_Shift_Del p.K124Nfs*95 0.26 TCGA-BR-8360-01 14 75412941 75412942 TC - PGF Frame_Shift_Del p.K154Afs*40 0.25 TCGA-BR-8360-01 14 78146294 78146294 G A ALKBH1 Missense_Mutation p.R159W 0.33 tolerated(0.1) benign(0.077) TCGA-BR-8360-01 14 81646522 81646522 T - GTF2A1 3'UTR 0.27 TCGA-BR-8360-01 14 81743821 81743821 G A STON2 Missense_Mutation p.R612C 0.31 tolerated(0.11) benign(0.273) TCGA-BR-8360-01 14 89628970 89628970 G A FOXN3 Missense_Mutation p.R421C 0.24 tolerated(0.08) possibly_damaging(0.841) TCGA-BR-8360-01 14 89878534 89878534 G - FOXN3 Frame_Shift_Del p.P96Hfs*42 0.26 TCGA-BR-8360-01 14 91787575 91787575 A G CCDC88C Silent p.N472N 0.29 TCGA-BR-8360-01 14 92560113 92560113 A G ATXN3 Silent p.Y99Y 0.35 TCGA-BR-8360-01 14 94044213 94044213 G A UNC79 Missense_Mutation p.R569Q 0.32 tolerated(0.08) benign(0.402) TCGA-BR-8360-01 14 94121610 94121610 G - UNC79 Frame_Shift_Del p.G1968Vfs*3 0.27 TCGA-BR-8360-01 14 94845740 94845740 G T SERPINA1 Intron 0.28 TCGA-BR-8360-01 14 99641438 99641438 C T BCL11B Missense_Mutation p.A579T 0.26 tolerated(0.6) benign(0.036) TCGA-BR-8360-01 15 102182749 102182749 G A TM2D3 Missense_Mutation p.T226M 0.32 deleterious(0) probably_damaging(0.996) TCGA-BR-8360-01 15 20649487 20649487 G A HERC2P3 RNA 0.13 TCGA-BR-8360-01 15 20651117 20651117 C T HERC2P3 RNA 0.43 TCGA-BR-8360-01 15 23412237 23412237 T C RP11-467N20.5 Missense_Mutation p.T74A 0.12 benign(0.091) TCGA-BR-8360-01 15 23890708 23890708 G A MAGEL2 Missense_Mutation p.R125C 0.44 deleterious_low_confidence(0.01) possibly_damaging(0.642) TCGA-BR-8360-01 15 28273201 28273201 G A OCA2 Missense_Mutation p.R111W 0.31 tolerated_low_confidence(0.21) benign(0.002) TCGA-BR-8360-01 15 31822980 31822980 C T OTUD7A Silent p.T194T 0.21 TCGA-BR-8360-01 15 31823008 31823008 C T OTUD7A Missense_Mutation p.R185H 0.20 tolerated(0.1) probably_damaging(0.996) TCGA-BR-8360-01 15 35044979 35044979 G A GJD2 Silent p.G222G 0.31 TCGA-BR-8360-01 15 35529679 35529679 C T ANP32AP1 RNA 0.27 TCGA-BR-8360-01 15 38643327 38643327 T C SPRED1 Missense_Mutation p.M266T 0.32 tolerated(0.23) benign(0.334) TCGA-BR-8360-01 15 40468681 40468681 C T BUB1B Missense_Mutation p.R130C 0.21 deleterious(0.03) benign(0.011) TCGA-BR-8360-01 15 40703479 40703479 C T IVD Silent p.I162I 0.35 TCGA-BR-8360-01 15 42032360 42032360 G T MGA Missense_Mutation p.G1515V 0.35 tolerated(0.3) benign(0.01) TCGA-BR-8360-01 15 42167792 42167792 G T SPTBN5 Missense_Mutation p.P1384H 0.45 benign(0.178) TCGA-BR-8360-01 15 53049694 53049694 T A ONECUT1 3'UTR 0.30 TCGA-BR-8360-01 15 65578609 65578610 AC - PARP16 Frame_Shift_Del p.C52* 0.38 TCGA-BR-8360-01 15 69335034 69335034 C A NOX5 Silent p.G512G 0.29 TCGA-BR-8360-01 15 72146864 72146864 C T MYO9A Missense_Mutation p.R2067H 0.21 tolerated(0.17) possibly_damaging(0.875) TCGA-BR-8360-01 15 74325013 74325013 T C PML Missense_Mutation p.V452A 0.29 deleterious(0.05) possibly_damaging(0.519) TCGA-BR-8360-01 15 79059752 79059752 G A ADAMTS7 Missense_Mutation p.P943L 0.24 deleterious(0.01) probably_damaging(1) TCGA-BR-8360-01 15 79089073 79089073 C T ADAMTS7 Silent p.R226R 0.21 TCGA-BR-8360-01 15 79090417 79090417 A G ADAMTS7 Silent p.I165I 0.29 TCGA-BR-8360-01 15 86123175 86123177 GAA - AKAP13 In_Frame_Del p.E627del 0.33 TCGA-BR-8360-01 15 88522410 88522410 G A NTRK3 Intron 0.25 TCGA-BR-8360-01 15 89744574 89744574 C T ABHD2 3'UTR 0.41 TCGA-BR-8360-01 15 90785087 90785087 G A GDPGP1 Missense_Mutation p.R316Q 0.37 deleterious(0) possibly_damaging(0.888) TCGA-BR-8360-01 15 99452112 99452112 C T IGF1R Silent p.N482N 0.23 TCGA-BR-8360-01 16 1270310 1270310 C T CACNA1H Silent p.A2126A 0.23 TCGA-BR-8360-01 16 16364028 16364028 T C NOMO3 Missense_Mutation p.Y649H 0.26 deleterious(0) probably_damaging(0.999) TCGA-BR-8360-01 16 20359631 20359631 G A UMOD Missense_Mutation p.T296M 0.24 tolerated(0.07) possibly_damaging(0.891) TCGA-BR-8360-01 16 2140034 2140034 G A PKD1 Silent p.G4202G 0.29 TCGA-BR-8360-01 16 2256622 2256622 G A MLST8 Silent p.T102T 0.24 TCGA-BR-8360-01 16 2282763 2282763 G A E4F1 Missense_Mutation p.R246H 0.28 deleterious(0) probably_damaging(1) TCGA-BR-8360-01 16 2436237 2436237 G A ABCA17P RNA 0.30 TCGA-BR-8360-01 16 24581781 24581781 G A RBBP6 Missense_Mutation p.G1257E 0.25 deleterious_low_confidence(0) unknown(0) TCGA-BR-8360-01 16 28909397 28909397 C - ATP2A1 Frame_Shift_Del p.P500Qfs*38 0.18 TCGA-BR-8360-01 16 30199821 30199821 G A CORO1A Missense_Mutation p.R402Q 0.29 tolerated(0.14) benign(0.058) TCGA-BR-8360-01 16 30616471 30616471 A G ZNF689 Missense_Mutation p.V206A 0.21 tolerated(0.75) benign(0.017) TCGA-BR-8360-01 16 30991144 30991144 C T SETD1A Missense_Mutation p.A1346V 0.40 unknown(0) TCGA-BR-8360-01 16 31405644 31405644 T C ITGAD Missense_Mutation p.V40A 0.17 tolerated(0.17) benign(0.409) TCGA-BR-8360-01 16 335551 335551 C T PDIA2 Silent p.L323L 0.33 TCGA-BR-8360-01 16 3828749 3828749 G T CREBBP Silent p.A631A 0.21 TCGA-BR-8360-01 16 48595876 48595876 A G N4BP1 Silent p.S226S 0.21 TCGA-BR-8360-01 16 51173150 51173150 G A SALL1 Missense_Mutation p.R995W 0.36 deleterious(0) probably_damaging(0.99) TCGA-BR-8360-01 16 53524074 53524074 A C RBL2 Silent p.T1094T 0.35 TCGA-BR-8360-01 16 53532414 53532414 T - AKTIP Frame_Shift_Del p.N46Mfs*5 0.23 TCGA-BR-8360-01 16 55807419 55807419 C A CES1P1 RNA 0.22 TCGA-BR-8360-01 16 57269043 57269043 C T RSPRY1 Missense_Mutation p.R513C 0.32 deleterious(0.04) possibly_damaging(0.869) TCGA-BR-8360-01 16 57719834 57719834 G A GPR97 Silent p.L512L 0.35 TCGA-BR-8360-01 16 58324946 58324946 C A PRSS54 Missense_Mutation p.Q60H 0.35 deleterious(0.02) probably_damaging(1) TCGA-BR-8360-01 16 61761058 61761058 G A CDH8 Silent p.N492N 0.04 TCGA-BR-8360-01 16 61851566 61851566 C T CDH8 Missense_Mutation p.R365H 0.30 deleterious(0.05) possibly_damaging(0.732) TCGA-BR-8360-01 16 67321888 67321888 G A PLEKHG4 Missense_Mutation p.R1064H 0.21 deleterious(0) probably_damaging(0.942) TCGA-BR-8360-01 16 67984960 67984960 A G SLC12A4 Missense_Mutation p.I436T 0.29 deleterious(0) probably_damaging(0.99) TCGA-BR-8360-01 16 68289855 68289855 G - PLA2G15 Frame_Shift_Del p.G232Afs*23 0.22 TCGA-BR-8360-01 16 68716319 68716319 G A CDH3 Missense_Mutation p.G371S 0.28 deleterious(0) probably_damaging(1) TCGA-BR-8360-01 16 726836 726836 C T RHBDL1 Silent p.Y187Y 0.33 TCGA-BR-8360-01 16 737628 737628 C T WDR24 Missense_Mutation p.R198Q 0.36 deleterious(0.01) possibly_damaging(0.899) TCGA-BR-8360-01 16 74706319 74706319 G A MLKL 3'UTR 0.23 TCGA-BR-8360-01 16 75146546 75146546 C T LDHD Missense_Mutation p.A438T 0.39 tolerated(0.09) benign(0.009) TCGA-BR-8360-01 16 84256426 84256426 G A KCNG4 Silent p.D319D 0.24 TCGA-BR-8360-01 16 84472790 84472809 TCCAGAGGGTCTGCCCATCG - ATP2C2 Frame_Shift_Del p.P336Rfs*37 0.22 TCGA-BR-8360-01 16 84600458 84600458 G A COTL1 Missense_Mutation p.T141M 0.29 tolerated_low_confidence(0.16) benign(0.014) TCGA-BR-8360-01 16 85111120 85111120 G A KIAA0513 Missense_Mutation p.E222K 0.35 tolerated(0.71) benign(0.158) TCGA-BR-8360-01 16 86612522 86612522 G A FOXL1 Missense_Mutation p.A65T 0.33 deleterious(0) probably_damaging(0.943) TCGA-BR-8360-01 16 86613223 86613223 G T FOXL1 Silent p.L298L 0.14 TCGA-BR-8360-01 16 87742975 87742975 C G KLHDC4 Missense_Mutation p.G448A 0.13 deleterious(0) probably_damaging(0.999) TCGA-BR-8360-01 16 89764374 89764374 G - SPATA2L Frame_Shift_Del p.R215Efs*102 0.19 TCGA-BR-8360-01 16 89774272 89774272 C T VPS9D1 Silent p.K631K 0.29 TCGA-BR-8360-01 16 8988969 8988969 A G USP7 Silent p.N986N 0.35 TCGA-BR-8360-01 16 90002028 90002028 G A TUBB3 Missense_Mutation p.R390Q 0.21 deleterious_low_confidence(0.04) benign(0.027) TCGA-BR-8360-01 16 9210617 9210617 A C C16orf72 Silent p.R226R 0.35 TCGA-BR-8360-01 17 10214522 10214522 C T MYH13 Silent p.E1518E 0.14 TCGA-BR-8360-01 17 10222453 10222453 G A MYH13 Missense_Mutation p.T1131M 0.34 deleterious(0) possibly_damaging(0.467) TCGA-BR-8360-01 17 12656201 12656201 C T MYOCD Silent p.T532T 0.19 TCGA-BR-8360-01 17 12896212 12896212 C T ELAC2 Missense_Mutation p.G802S 0.29 tolerated_low_confidence(0.4) benign(0.004) TCGA-BR-8360-01 17 1582418 1582418 G A PRPF8 Missense_Mutation p.R498C 0.31 deleterious(0) probably_damaging(0.967) TCGA-BR-8360-01 17 1585245 1585245 C T PRPF8 Silent p.P174P 0.31 TCGA-BR-8360-01 17 17030057 17030057 C T MPRIP Silent p.C103C 0.33 TCGA-BR-8360-01 17 17062029 17062029 C T MPRIP Missense_Mutation p.R587W 0.27 deleterious(0.01) benign(0.334) TCGA-BR-8360-01 17 20805968 20805968 C T RP11-344E13.3 RNA 0.18 TCGA-BR-8360-01 17 21101952 21101952 C T TMEM11 Silent p.A88A 0.10 TCGA-BR-8360-01 17 26449740 26449740 T - NLK Frame_Shift_Del p.F192Lfs*30 0.17 TCGA-BR-8360-01 17 26671652 26671652 G A TNFAIP1 3'UTR 0.33 TCGA-BR-8360-01 17 27284223 27284224 - G SEZ6 Frame_Shift_Ins p.E845* 0.27 TCGA-BR-8360-01 17 27857552 27857552 G A TAOK1 Missense_Mutation p.R759Q 0.27 tolerated(0.23) benign(0.049) TCGA-BR-8360-01 17 29622153 29622153 G T OMG Silent p.T399T 0.27 TCGA-BR-8360-01 17 3195643 3195643 G A OR3A1 Silent p.S78S 0.32 TCGA-BR-8360-01 17 33289066 33289071 GATGAG - ZNF830 In_Frame_Del p.D161_E162del 0.19 TCGA-BR-8360-01 17 33289083 33289083 A G ZNF830 Silent p.E166E 0.08 TCGA-BR-8360-01 17 34171552 34171552 G A TAF15 Missense_Mutation p.G417S 0.05 deleterious_low_confidence(0.01) unknown(0) TCGA-BR-8360-01 17 3655036 3655036 G - ITGAE Frame_Shift_Del p.L601Wfs*82 0.18 TCGA-BR-8360-01 17 38244713 38244713 G T THRA Silent p.T314T 0.24 TCGA-BR-8360-01 17 39503321 39503321 C T KRT33A Missense_Mutation p.A248T 0.22 tolerated(0.68) benign(0.002) TCGA-BR-8360-01 17 39520144 39520144 T G KRT33B Missense_Mutation p.T387P 0.32 tolerated(0.48) benign(0) TCGA-BR-8360-01 17 40174601 40174602 TT - NKIRAS2 Frame_Shift_Del p.F94Sfs*11 0.24 TCGA-BR-8360-01 17 40256795 40256795 A G DHX58 Missense_Mutation p.Y518H 0.15 deleterious(0) probably_damaging(0.954) TCGA-BR-8360-01 17 40825735 40825735 G A PLEKHH3 Missense_Mutation p.A139V 0.41 deleterious(0) unknown(0) TCGA-BR-8360-01 17 41245719 41245719 C A BRCA1 Missense_Mutation p.R610M 0.31 tolerated(0.07) probably_damaging(0.997) TCGA-BR-8360-01 17 42390848 42390848 T G RUNDC3A Silent p.A145A 0.09 TCGA-BR-8360-01 17 43008980 43008980 G A KIF18B Missense_Mutation p.R503C 0.25 tolerated(0.13) benign(0.007) TCGA-BR-8360-01 17 43240209 43240210 - C HEXIM2 Frame_Shift_Ins p.L18Pfs*18 0.26 TCGA-BR-8360-01 17 43364390 43364390 C T MAP3K14 RNA 0.36 TCGA-BR-8360-01 17 4510711 4510711 C T SMTNL2 Missense_Mutation p.R439C 0.31 deleterious(0) probably_damaging(0.951) TCGA-BR-8360-01 17 46135782 46135782 G A NFE2L1 Silent p.A366A 0.26 TCGA-BR-8360-01 17 465886 465886 G A VPS53 Silent p.C471C 0.22 TCGA-BR-8360-01 17 46607743 46607743 G T HOXB1 Missense_Mutation p.P175H 0.20 deleterious(0) possibly_damaging(0.855) TCGA-BR-8360-01 17 46628524 46628524 G A HOXB3 Silent p.G156G 0.38 TCGA-BR-8360-01 17 46629516 46629516 G A HOXB3 Silent p.G107G 0.34 TCGA-BR-8360-01 17 46804349 46804349 G A HOXB13 Missense_Mutation p.R220C 0.43 deleterious(0) probably_damaging(0.999) TCGA-BR-8360-01 17 48433258 48433258 T C XYLT2 Missense_Mutation p.F402S 0.24 deleterious(0) possibly_damaging(0.903) TCGA-BR-8360-01 17 48653598 48653598 C T CACNA1G Missense_Mutation p.A612V 0.50 tolerated(0.45) benign(0.001) TCGA-BR-8360-01 17 5041527 5041527 C T USP6 Missense_Mutation p.T346M 0.33 tolerated_low_confidence(1) possibly_damaging(0.791) TCGA-BR-8360-01 17 54969424 54969424 C - TRIM25 Frame_Shift_Del p.I511Sfs*16 0.14 TCGA-BR-8360-01 17 55945510 55945510 C T CUEDC1 Splice_Site p.X345_splice 0.29 TCGA-BR-8360-01 17 57290673 57290673 C T SMG8 Missense_Mutation p.A830V 0.30 tolerated(0.12) benign(0.102) TCGA-BR-8360-01 17 58022829 58022829 A - RP11-178C3.1 Frame_Shift_Del p.I35Sfs*107 0.25 TCGA-BR-8360-01 17 58740439 58740439 T - PPM1D Frame_Shift_Del p.L450* 0.27 TCGA-BR-8360-01 17 58740617 58740617 A G PPM1D Missense_Mutation p.M508V 0.29 tolerated_low_confidence(1) benign(0) TCGA-BR-8360-01 17 62272340 62272340 T - TEX2 Frame_Shift_Del p.N587Ifs*124 0.26 TCGA-BR-8360-01 17 62532743 62532743 A C CEP95 Missense_Mutation p.E698D 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-BR-8360-01 17 64873462 64873462 C T CACNG5 Silent p.C4C 0.39 TCGA-BR-8360-01 17 66511682 66511682 G A PRKAR1A Missense_Mutation p.A48T 0.34 tolerated(0.57) benign(0.005) TCGA-BR-8360-01 17 66980295 66980295 A G ABCA9 Silent p.F1467F 0.34 TCGA-BR-8360-01 17 72851041 72851041 G A GRIN2C Missense_Mutation p.P64L 0.23 tolerated(0.1) possibly_damaging(0.754) TCGA-BR-8360-01 17 72859231 72859231 A G FDXR Missense_Mutation p.Y481H 0.36 tolerated(0.34) benign(0.016) TCGA-BR-8360-01 17 73132094 73132094 T - HN1 3'UTR 0.20 TCGA-BR-8360-01 17 7317671 7317671 G A NLGN2 Missense_Mutation p.D173N 0.26 tolerated(0.14) possibly_damaging(0.785) TCGA-BR-8360-01 17 74035773 74035773 G A SRP68 3'UTR 0.41 TCGA-BR-8360-01 17 74386958 74386958 G - UBE2O 3'UTR 0.34 TCGA-BR-8360-01 17 74394635 74394635 C A UBE2O Missense_Mutation p.G605V 0.25 deleterious(0) probably_damaging(0.999) TCGA-BR-8360-01 17 7574003 7574003 G A TP53 Nonsense_Mutation p.R342* 0.18 TCGA-BR-8360-01 17 7574018 7574018 G A TP53 Missense_Mutation p.R337C 0.36 tolerated(0.09) benign(0.344) TCGA-BR-8360-01 17 7661896 7661896 T A DNAH2 Missense_Mutation p.L712H 0.28 probably_damaging(0.998) TCGA-BR-8360-01 17 78319303 78319303 G A RNF213 Missense_Mutation p.D2390N 0.23 probably_damaging(1) TCGA-BR-8360-01 17 79539094 79539094 G C NPLOC4 Missense_Mutation p.N434K 0.26 deleterious(0.01) probably_damaging(0.998) TCGA-BR-8360-01 17 79994478 79994478 G A DCXR Silent p.A130A 0.33 TCGA-BR-8360-01 17 80397570 80397570 C T HEXDC Silent p.C321C 0.23 TCGA-BR-8360-01 17 8926196 8926196 G A NTN1 Missense_Mutation p.R169H 0.38 tolerated(0.12) possibly_damaging(0.76) TCGA-BR-8360-01 17 959308 959308 C T ABR Missense_Mutation p.V510I 0.31 tolerated(0.19) probably_damaging(0.997) TCGA-BR-8360-01 17 973307 973307 G A ABR Silent p.G306G 0.29 TCGA-BR-8360-01 17 9792953 9792953 C T GLP2R Silent p.S531S 0.47 TCGA-BR-8360-01 18 11752278 11752278 C T GNAL Intron 0.21 TCGA-BR-8360-01 18 12325590 12325590 C T TUBB6 Missense_Mutation p.P268S 0.12 tolerated_low_confidence(0.08) probably_damaging(0.998) TCGA-BR-8360-01 18 23772332 23772332 A G PSMA8 Missense_Mutation p.E243G 0.16 tolerated(0.08) unknown(0) TCGA-BR-8360-01 18 29788119 29788119 A G MEP1B Silent p.E268E 0.30 TCGA-BR-8360-01 18 31325872 31325872 A G ASXL3 Silent p.P2020P 0.32 TCGA-BR-8360-01 18 32455332 32455332 G - DTNA Frame_Shift_Del p.G539Efs*15 0.16 TCGA-BR-8360-01 18 33744530 33744530 G A ELP2 Silent p.T683T 0.28 TCGA-BR-8360-01 18 34349306 34349306 G A FHOD3 Missense_Mutation p.R1385H 0.39 deleterious(0.03) probably_damaging(0.976) TCGA-BR-8360-01 18 42532660 42532660 G T SETBP1 Nonsense_Mutation p.G1119* 0.27 TCGA-BR-8360-01 18 45567019 45567019 C T ZBTB7C Missense_Mutation p.E154K 0.26 tolerated(0.08) possibly_damaging(0.905) TCGA-BR-8360-01 18 47431168 47431168 C T MYO5B Silent p.A815A 0.13 TCGA-BR-8360-01 18 47809075 47809075 C A CXXC1 Missense_Mutation p.R624L 0.33 deleterious(0.02) probably_damaging(0.977) TCGA-BR-8360-01 18 56939817 56939817 C T RAX Missense_Mutation p.G107R 0.37 deleterious(0.01) possibly_damaging(0.906) TCGA-BR-8360-01 18 67715346 67715346 A C RTTN Missense_Mutation p.L1801R 0.21 deleterious(0) probably_damaging(0.993) TCGA-BR-8360-01 18 683287 683287 T A ENOSF1 Missense_Mutation p.T300S 0.30 deleterious(0) probably_damaging(0.995) TCGA-BR-8360-01 18 6959369 6959369 C T LAMA1 Silent p.A2583A 0.26 TCGA-BR-8360-01 18 76753340 76753340 G A SALL3 Missense_Mutation p.C450Y 0.31 deleterious(0) probably_damaging(0.999) TCGA-BR-8360-01 18 76754516 76754516 C T SALL3 Missense_Mutation p.A842V 0.36 tolerated(0.06) possibly_damaging(0.684) TCGA-BR-8360-01 18 77659548 77659548 G A KCNG2 Missense_Mutation p.R378H 0.10 tolerated(0.07) possibly_damaging(0.471) TCGA-BR-8360-01 18 77659577 77659577 A G KCNG2 Missense_Mutation p.S388G 0.22 deleterious(0.02) benign(0.161) TCGA-BR-8360-01 18 77894261 77894261 C - ADNP2 Frame_Shift_Del p.P324Lfs*8 0.33 TCGA-BR-8360-01 19 10222388 10222388 G A P2RY11 5'UTR 0.15 TCGA-BR-8360-01 19 1058906 1058906 G - ABCA7 Frame_Shift_Del p.D1791Mfs*5 0.18 TCGA-BR-8360-01 19 10677793 10677793 G A CDKN2D Nonsense_Mutation p.Q148* 0.37 TCGA-BR-8360-01 19 11565638 11565638 G A ELAVL3 Silent p.G269G 0.23 TCGA-BR-8360-01 19 11918153 11918153 A C ZNF491 3'UTR 0.33 TCGA-BR-8360-01 19 12059372 12059372 G A ZNF700 Missense_Mutation p.R178H 0.25 tolerated(0.6) benign(0.001) TCGA-BR-8360-01 19 12155504 12155504 A - ZNF878 Frame_Shift_Del p.S238Lfs*5 0.25 TCGA-BR-8360-01 19 1257208 1257208 C T MIDN Silent p.F448F 0.24 TCGA-BR-8360-01 19 12740137 12740149 TGAAAATTCCCAC - ZNF791 3'UTR 0.32 TCGA-BR-8360-01 19 13084268 13084268 C A DAND5 Silent p.S130S 0.27 TCGA-BR-8360-01 19 13947256 13947256 G - ZSWIM4 3'Flank 0.38 TCGA-BR-8360-01 19 14034616 14034616 C T CC2D1A Silent p.S644S 0.25 TCGA-BR-8360-01 19 14067019 14067019 C T DCAF15 Silent p.A186A 0.28 TCGA-BR-8360-01 19 14104570 14104570 G A RFX1 Missense_Mutation p.P29L 0.26 tolerated_low_confidence(0.3) unknown(0) TCGA-BR-8360-01 19 14581440 14581440 C T PKN1 Silent p.D836D 0.69 TCGA-BR-8360-01 19 15648181 15648181 C - CYP4F22 Frame_Shift_Del p.K128Rfs*9 0.27 TCGA-BR-8360-01 19 15651358 15651358 C T CYP4F22 Missense_Mutation p.R257C 0.23 deleterious(0.01) benign(0.01) TCGA-BR-8360-01 19 16980624 16980624 G A SIN3B Silent p.P752P 0.38 TCGA-BR-8360-01 19 17038831 17038831 C T CPAMD8 Missense_Mutation p.A1167T 0.27 deleterious(0.03) probably_damaging(0.996) TCGA-BR-8360-01 19 18273010 18273010 A G PIK3R2 Splice_Site p.X301_splice 0.42 TCGA-BR-8360-01 19 18502843 18502843 C T LRRC25 Missense_Mutation p.G291D 0.19 tolerated(0.17) probably_damaging(0.988) TCGA-BR-8360-01 19 19338531 19338531 C G NCAN Missense_Mutation p.P701R 0.25 deleterious(0) benign(0.293) TCGA-BR-8360-01 19 19822525 19822525 T C ZNF14 Missense_Mutation p.E522G 0.05 tolerated(0.15) probably_damaging(0.913) TCGA-BR-8360-01 19 20228702 20228702 A - ZNF90 Frame_Shift_Del p.G116Vfs*22 0.33 TCGA-BR-8360-01 19 20808310 20808310 C T ZNF626 Missense_Mutation p.V125M 0.19 tolerated(0.2) possibly_damaging(0.757) TCGA-BR-8360-01 19 34263898 34263898 G A CHST8 Missense_Mutation p.R402H 0.39 tolerated(0.11) benign(0.051) TCGA-BR-8360-01 19 35741230 35741230 C T LSR Missense_Mutation p.A89V 0.23 deleterious(0) probably_damaging(0.997) TCGA-BR-8360-01 19 35761435 35761435 C T USF2 Missense_Mutation p.A172V 0.34 deleterious(0.02) probably_damaging(0.951) TCGA-BR-8360-01 19 35791272 35791272 G A MAG Missense_Mutation p.G312D 0.22 deleterious(0.01) probably_damaging(0.981) TCGA-BR-8360-01 19 35941539 35941540 - G FFAR2 Frame_Shift_Ins p.T310Dfs*3 0.27 TCGA-BR-8360-01 19 36027833 36027833 C T GAPDHS Silent p.P62P 0.28 TCGA-BR-8360-01 19 36216189 36216189 C T KMT2B Silent p.G1199G 0.39 TCGA-BR-8360-01 19 36430331 36430331 G A LRFN3 Missense_Mutation p.A2T 0.44 tolerated_low_confidence(0.07) unknown(0) TCGA-BR-8360-01 19 37676954 37676954 T C ZNF585B Missense_Mutation p.I495M 0.26 deleterious(0.03) benign(0.018) TCGA-BR-8360-01 19 37917233 37917233 C T ZNF569 Silent p.E21E 0.27 TCGA-BR-8360-01 19 38028415 38028415 T - ZNF793 Frame_Shift_Del p.C288Vfs*113 0.33 TCGA-BR-8360-01 19 3823259 3823259 C T ZFR2 Silent p.P452P 0.33 TCGA-BR-8360-01 19 38621191 38621191 C T SIPA1L3 Silent p.L974L 0.24 TCGA-BR-8360-01 19 39191313 39191313 G A ACTN4 Missense_Mutation p.R79Q 0.35 deleterious(0.04) probably_damaging(0.963) TCGA-BR-8360-01 19 4037644 4037644 C - PIAS4 Frame_Shift_Del p.S437Afs*156 0.12 TCGA-BR-8360-01 19 40399803 40399803 C T FCGBP Silent p.P1964P 0.24 TCGA-BR-8360-01 19 40832311 40832311 G A C19orf47 Silent p.Y211Y 0.14 TCGA-BR-8360-01 19 41349705 41349705 C T CYP2A6 Missense_Mutation p.R494H 0.24 probably_damaging(0.998) TCGA-BR-8360-01 19 41726691 41726691 C T AXL Missense_Mutation p.A79V 0.38 deleterious(0.02) possibly_damaging(0.884) TCGA-BR-8360-01 19 43519387 43519387 G T PSG11 Nonsense_Mutation p.S282* 0.27 TCGA-BR-8360-01 19 44111887 44111887 T C ZNF428 Missense_Mutation p.E150G 0.43 tolerated_low_confidence(0.23) benign(0) TCGA-BR-8360-01 19 44590402 44590402 A C ZNF284 Missense_Mutation p.K257N 0.30 deleterious(0) probably_damaging(1) TCGA-BR-8360-01 19 44660629 44660629 A - ZNF234 Frame_Shift_Del p.K155Nfs*74 0.17 TCGA-BR-8360-01 19 45316790 45316790 G A BCAM Missense_Mutation p.A233T 0.30 deleterious(0.01) possibly_damaging(0.71) TCGA-BR-8360-01 19 4548310 4548310 G A SEMA6B Silent p.V473V 0.26 TCGA-BR-8360-01 19 45656240 45656240 C T NKPD1 Silent p.A485A 0.33 TCGA-BR-8360-01 19 45992808 45992808 G A RTN2 Missense_Mutation p.A346V 0.33 tolerated(0.33) benign(0.031) TCGA-BR-8360-01 19 46543796 46543796 G C IGFL4 Nonsense_Mutation p.S17* 0.24 TCGA-BR-8360-01 19 4818093 4818093 C T TICAM1 Silent p.L99L 0.25 TCGA-BR-8360-01 19 48977274 48977274 G T CYTH2 Missense_Mutation p.D183Y 0.50 deleterious(0) probably_damaging(0.995) TCGA-BR-8360-01 19 49218105 49218106 - G MAMSTR Frame_Shift_Ins p.H163Tfs*9 0.32 TCGA-BR-8360-01 19 49246783 49246783 C A IZUMO1 Splice_Site p.X140_splice 0.27 TCGA-BR-8360-01 19 50309974 50309974 G A AP2A1 Missense_Mutation p.V965I 0.32 tolerated(0.06) possibly_damaging(0.52) TCGA-BR-8360-01 19 50339096 50339096 G A MED25 Missense_Mutation p.G620D 0.44 deleterious_low_confidence(0.04) possibly_damaging(0.482) TCGA-BR-8360-01 19 5039897 5039897 C T KDM4B Silent p.D64D 0.37 TCGA-BR-8360-01 19 50548684 50548684 T - ZNF473 Frame_Shift_Del p.F329Lfs*30 0.29 TCGA-BR-8360-01 19 51136065 51136065 A C SYT3 Missense_Mutation p.I51S 0.07 deleterious(0.04) possibly_damaging(0.879) TCGA-BR-8360-01 19 51379894 51379894 C T KLK2 Missense_Mutation p.R125C 0.29 deleterious(0) possibly_damaging(0.775) TCGA-BR-8360-01 19 51483543 51483543 C T KLK7 Missense_Mutation p.G141E 0.24 deleterious(0) probably_damaging(0.999) TCGA-BR-8360-01 19 5210705 5210705 C A PTPRS Silent p.L1782L 0.07 TCGA-BR-8360-01 19 53050772 53050772 T C ZNF808 Missense_Mutation p.L24S 0.32 deleterious(0) possibly_damaging(0.564) TCGA-BR-8360-01 19 54191791 54191791 C T MIR1283-1 RNA 0.39 TCGA-BR-8360-01 19 54230198 54230198 T C MIR526A2 RNA 0.36 TCGA-BR-8360-01 19 56320425 56320425 C A NLRP11 Missense_Mutation p.M517I 0.22 tolerated(0.1) benign(0.004) TCGA-BR-8360-01 19 5661753 5661753 G A SAFB Missense_Mutation p.R696H 0.33 deleterious(0.01) unknown(0) TCGA-BR-8360-01 19 5668284 5668284 C T SAFB Silent p.R912R 0.42 TCGA-BR-8360-01 19 5679654 5679654 G - C19orf70 Frame_Shift_Del p.A51Pfs*39 0.51 TCGA-BR-8360-01 19 57134038 57134038 G A ZNF71 Silent p.T461T 0.25 TCGA-BR-8360-01 19 58118568 58118568 A - ZNF530 Frame_Shift_Del p.N560Ifs*32 0.25 TCGA-BR-8360-01 19 5831642 5831642 C T FUT6 Missense_Mutation p.A313T 0.11 tolerated(0.5) benign(0.034) TCGA-BR-8360-01 19 58386114 58386114 C T ZNF814 Missense_Mutation p.S215N 0.35 tolerated(0.29) possibly_damaging(0.878) TCGA-BR-8360-01 19 58579087 58579087 G A ZNF135 Missense_Mutation p.C436Y 0.25 deleterious(0) probably_damaging(1) TCGA-BR-8360-01 19 59028938 59028938 C T ZBTB45 Missense_Mutation p.V35M 0.35 deleterious(0) probably_damaging(0.998) TCGA-BR-8360-01 19 6468936 6468936 C - DENND1C Frame_Shift_Del p.G479Afs*3 0.35 TCGA-BR-8360-01 19 7976149 7976149 C - MAP2K7 Frame_Shift_Del p.P292Qfs*119 0.24 TCGA-BR-8360-01 19 7977071 7977073 AAG - MAP2K7 In_Frame_Del p.K373del 0.34 TCGA-BR-8360-01 19 8616964 8616964 C T MYO1F Missense_Mutation p.V197M 0.24 deleterious(0) probably_damaging(0.991) TCGA-BR-8360-01 19 8619568 8619568 G A MYO1F Silent p.T67T 0.30 TCGA-BR-8360-01 19 8953876 8953876 G A MBD3L1 Silent p.A174A 0.33 TCGA-BR-8360-01 19 9083531 9083531 T G MUC16 Missense_Mutation p.S2762R 0.31 unknown(0) TCGA-BR-8360-01 19 9213400 9213400 T G OR7G2 Missense_Mutation p.I195L 0.24 deleterious(0.01) possibly_damaging(0.596) TCGA-BR-8360-01 1 10190583 10190583 C T UBE4B Missense_Mutation p.P574L 0.28 deleterious(0.04) benign(0.143) TCGA-BR-8360-01 1 10363659 10363659 G A KIF1B Intron 0.31 TCGA-BR-8360-01 1 10725240 10725240 G A CASZ1 Silent p.H135H 0.28 TCGA-BR-8360-01 1 107691423 107691423 A G NTNG1 Missense_Mutation p.I70V 0.30 deleterious(0.05) benign(0.392) TCGA-BR-8360-01 1 109772189 109772189 G A SARS Missense_Mutation p.D148N 0.27 tolerated(0.54) benign(0.005) TCGA-BR-8360-01 1 110020512 110020512 G A SYPL2 Missense_Mutation p.D177N 0.08 deleterious(0.02) probably_damaging(0.999) TCGA-BR-8360-01 1 110029769 110029769 A G ATXN7L2 Missense_Mutation p.R147G 0.16 tolerated(0.06) benign(0.141) TCGA-BR-8360-01 1 114522210 114522210 C G OLFML3 Missense_Mutation p.H24Q 0.30 tolerated(0.33) benign(0) TCGA-BR-8360-01 1 115123933 115123933 T C BCAS2 Missense_Mutation p.Y58C 0.29 tolerated(0.11) possibly_damaging(0.744) TCGA-BR-8360-01 1 1153181 1153181 C T SDF4 Intron 0.23 TCGA-BR-8360-01 1 116243774 116243774 G - CASQ2 3'UTR 0.14 TCGA-BR-8360-01 1 119925576 119925576 A C HAO2 Missense_Mutation p.E57A 0.50 tolerated(0.43) benign(0.014) TCGA-BR-8360-01 1 12091856 12091856 G A MIIP Silent p.Q386Q 0.32 TCGA-BR-8360-01 1 1248900 1248900 C T CPSF3L Missense_Mutation p.E350K 0.27 tolerated(0.07) possibly_damaging(0.704) TCGA-BR-8360-01 1 1309707 1309707 C T AURKAIP1 Silent p.Q57Q 0.32 TCGA-BR-8360-01 1 13668962 13668962 G - PRAMEF14 Frame_Shift_Del p.C457Afs*39 0.19 TCGA-BR-8360-01 1 13719053 13719053 T G PRAMEF17 3'UTR 0.23 TCGA-BR-8360-01 1 144816644 144816644 T C NBPF9 Silent p.H258H 0.12 TCGA-BR-8360-01 1 144912234 144912234 G A PDE4DIP Missense_Mutation p.R681C 0.13 deleterious(0.03) probably_damaging(0.992) TCGA-BR-8360-01 1 145578250 145578250 G A PIAS3 Silent p.G71G 0.59 TCGA-BR-8360-01 1 145609187 145609187 T C POLR3C Intron 0.50 TCGA-BR-8360-01 1 1500029 1500029 G A SSU72 Intron 0.28 TCGA-BR-8360-01 1 151498178 151498178 A C CGN Silent p.R559R 0.20 TCGA-BR-8360-01 1 152191477 152191477 G A HRNR Silent p.H876H 0.23 TCGA-BR-8360-01 1 152276878 152276878 G A FLG Missense_Mutation p.S3495L 0.17 unknown(0) TCGA-BR-8360-01 1 152280586 152280586 C T FLG Missense_Mutation p.R2259Q 0.18 benign(0.238) TCGA-BR-8360-01 1 152770396 152770396 C A LCE1D Silent p.V42V 0.13 TCGA-BR-8360-01 1 154030659 154030659 T G NUP210L Silent p.R1005R 0.47 TCGA-BR-8360-01 1 154988174 154988174 G A ZBTB7B Silent p.Q380Q 0.10 TCGA-BR-8360-01 1 155028261 155028261 A G ADAM15 Intron 0.63 TCGA-BR-8360-01 1 156046750 156046750 G A MEX3A Missense_Mutation p.A393V 0.26 tolerated(0.09) benign(0.445) TCGA-BR-8360-01 1 156811544 156811544 C T INSRR Missense_Mutation p.R1147H 0.13 deleterious(0) possibly_damaging(0.67) TCGA-BR-8360-01 1 157765955 157765955 G T FCRL1 Silent p.S408S 0.24 TCGA-BR-8360-01 1 158224939 158224939 C A CD1A Missense_Mutation p.Q42K 0.19 tolerated(0.24) benign(0) TCGA-BR-8360-01 1 158224948 158224948 G A CD1A Missense_Mutation p.V45I 0.19 deleterious(0.04) benign(0.001) TCGA-BR-8360-01 1 158813818 158813818 C T MNDA Missense_Mutation p.P159L 0.13 deleterious(0.01) benign(0.196) TCGA-BR-8360-01 1 159163671 159163671 C T CADM3 Missense_Mutation p.R212C 0.55 tolerated(0.05) possibly_damaging(0.594) TCGA-BR-8360-01 1 160062767 160062767 C T IGSF8 Missense_Mutation p.R420H 0.13 tolerated(0.13) probably_damaging(0.996) TCGA-BR-8360-01 1 160121890 160121890 A T ATP1A4 Missense_Mutation p.R20S 0.18 tolerated(0.79) benign(0.001) TCGA-BR-8360-01 1 160165279 160165279 G T CASQ1 Missense_Mutation p.E202D 0.40 deleterious(0.01) possibly_damaging(0.89) TCGA-BR-8360-01 1 160390844 160390844 A C VANGL2 Missense_Mutation p.N314H 0.16 deleterious(0.04) possibly_damaging(0.905) TCGA-BR-8360-01 1 160721212 160721212 G C SLAMF7 Missense_Mutation p.E283Q 0.25 tolerated(0.18) possibly_damaging(0.575) TCGA-BR-8360-01 1 161163914 161163914 G A ADAMTS4 Silent p.F453F 0.16 TCGA-BR-8360-01 1 161495916 161495916 G A HSPA6 Missense_Mutation p.V490M 0.54 deleterious_low_confidence(0) probably_damaging(1) TCGA-BR-8360-01 1 16263675 16263675 T C SPEN Silent p.G3348G 0.28 TCGA-BR-8360-01 1 16358730 16358730 G A CLCNKA Missense_Mutation p.A597T 0.21 tolerated(0.3) benign(0.005) TCGA-BR-8360-01 1 165218837 165218837 C T LMX1A Missense_Mutation p.A102T 0.21 tolerated(0.14) possibly_damaging(0.474) TCGA-BR-8360-01 1 169699580 169699580 G T SELE Silent p.A236A 0.17 TCGA-BR-8360-01 1 170024447 170024447 T - KIFAP3 Frame_Shift_Del p.I55Sfs*13 0.42 TCGA-BR-8360-01 1 172558186 172558186 C T SUCO Nonsense_Mutation p.R649* 0.10 TCGA-BR-8360-01 1 17272894 17272894 C T CROCC Silent p.V759V 0.11 TCGA-BR-8360-01 1 17397901 17397901 C A PADI2 Missense_Mutation p.Q545H 0.05 deleterious(0) probably_damaging(0.996) TCGA-BR-8360-01 1 17597402 17597402 A G PADI3 Missense_Mutation p.D287G 0.24 deleterious(0) probably_damaging(0.977) TCGA-BR-8360-01 1 176015447 176015447 G A RFWD2 Missense_Mutation p.R431W 0.59 deleterious(0) probably_damaging(0.993) TCGA-BR-8360-01 1 177001771 177001771 C T ASTN1 Missense_Mutation p.G229D 0.24 tolerated_low_confidence(0.06) probably_damaging(1) TCGA-BR-8360-01 1 177199054 177199054 G A BRINP2 Silent p.P14P 0.09 TCGA-BR-8360-01 1 182353564 182353564 A G GLUL Silent p.D366D 0.14 TCGA-BR-8360-01 1 182844070 182844070 A G DHX9 Missense_Mutation p.D599G 0.44 tolerated(0.13) benign(0.004) TCGA-BR-8360-01 1 183079760 183079760 C T LAMC1 Missense_Mutation p.A331V 0.16 deleterious(0) probably_damaging(0.968) TCGA-BR-8360-01 1 185277956 185277957 - T IVNS1ABP Frame_Shift_Ins p.L112Afs*12 0.15 TCGA-BR-8360-01 1 185703895 185703895 G - HMCN1 5'UTR 0.15 TCGA-BR-8360-01 1 186273298 186273298 T G PRG4 Silent p.S126S 0.63 TCGA-BR-8360-01 1 186322825 186322825 C T TPR Missense_Mutation p.A777T 0.03 possibly_damaging(0.499) TCGA-BR-8360-01 1 190233999 190233999 A C BRINP3 Missense_Mutation p.I205R 0.23 deleterious(0) benign(0.075) TCGA-BR-8360-01 1 192548282 192548282 C A RGS1 Missense_Mutation p.R154S 0.17 tolerated(0.34) benign(0.009) TCGA-BR-8360-01 1 19441312 19441312 C T UBR4 Missense_Mutation p.R3732Q 0.34 benign(0.02) TCGA-BR-8360-01 1 197070110 197070110 T A ASPM Missense_Mutation p.K2757N 0.54 tolerated(0.48) benign(0.049) TCGA-BR-8360-01 1 198701498 198701498 C T PTPRC Missense_Mutation p.R682C 0.55 deleterious(0) probably_damaging(1) TCGA-BR-8360-01 1 205388453 205388453 T - LEMD1 Frame_Shift_Del p.K37Sfs*2 0.33 TCGA-BR-8360-01 1 208216456 208216456 G A PLXNA2 Nonsense_Mutation p.R1323* 0.40 TCGA-BR-8360-01 1 209933484 209933484 C A TRAF3IP3 Missense_Mutation p.R34S 0.44 deleterious(0.01) possibly_damaging(0.88) TCGA-BR-8360-01 1 210004282 210004282 G A DIEXF Silent p.E94E 0.27 TCGA-BR-8360-01 1 214830653 214830653 A - CENPF Frame_Shift_Del p.S2957Afs*6 0.19 TCGA-BR-8360-01 1 215342563 215342563 G A KCNK2 Missense_Mutation p.R166H 0.12 tolerated(0.22) benign(0.003) TCGA-BR-8360-01 1 21903914 21903914 C T ALPL Missense_Mutation p.R450C 0.29 tolerated(0.05) probably_damaging(0.932) TCGA-BR-8360-01 1 220311323 220311323 G T IARS2 Missense_Mutation p.V705F 0.25 tolerated(0.22) possibly_damaging(0.786) TCGA-BR-8360-01 1 220327384 220327384 A G RAB3GAP2 Missense_Mutation p.F1191L 0.23 deleterious(0.01) possibly_damaging(0.839) TCGA-BR-8360-01 1 222802632 222802633 - T MIA3 Frame_Shift_Ins p.H693Sfs*17 0.21 TCGA-BR-8360-01 1 226032198 226032198 G A EPHX1 Splice_Site p.X347_splice 0.26 TCGA-BR-8360-01 1 227935782 227935782 A G SNAP47 Silent p.P160P 0.07 TCGA-BR-8360-01 1 228285130 228285130 G A ARF1 Missense_Mutation p.R79H 0.29 deleterious_low_confidence(0.05) benign(0.011) TCGA-BR-8360-01 1 228538598 228538598 G A OBSCN Missense_Mutation p.A7082T 0.19 possibly_damaging(0.865) TCGA-BR-8360-01 1 229619808 229619808 A G NUP133 Missense_Mutation p.Y529H 0.33 tolerated(0.31) probably_damaging(0.969) TCGA-BR-8360-01 1 233105691 233105691 G A NTPCR Missense_Mutation p.V111I 0.07 tolerated(0.72) benign(0.034) TCGA-BR-8360-01 1 237755119 237755119 G A RYR2 Missense_Mutation p.R1414Q 0.50 benign(0.001) TCGA-BR-8360-01 1 242511409 242511409 G A PLD5 Nonsense_Mutation p.R109* 0.29 TCGA-BR-8360-01 1 245849479 245849479 C - KIF26B Frame_Shift_Del p.R1067Gfs*65 0.24 TCGA-BR-8360-01 1 247654684 247654684 G - OR2W5 RNA 0.33 TCGA-BR-8360-01 1 247695356 247695356 C - OR2C3 Frame_Shift_Del p.G153Vfs*2 0.21 TCGA-BR-8360-01 1 247876039 247876039 T C OR6F1 Missense_Mutation p.T7A 0.49 deleterious(0.01) benign(0.141) TCGA-BR-8360-01 1 29475301 29475301 C T SRSF4 Missense_Mutation p.R369H 0.33 tolerated_low_confidence(0.16) unknown(0) TCGA-BR-8360-01 1 32193178 32193178 C A BAI2 Missense_Mutation p.S1534I 0.33 tolerated(0.31) benign(0.036) TCGA-BR-8360-01 1 3328286 3328286 G A PRDM16 Missense_Mutation p.A509T 0.31 tolerated(0.22) benign(0.007) TCGA-BR-8360-01 1 3386085 3386085 G A ARHGEF16 Missense_Mutation p.R317Q 0.18 tolerated(0.21) benign(0.248) TCGA-BR-8360-01 1 3669276 3669276 C T CCDC27 Silent p.D77D 0.42 TCGA-BR-8360-01 1 36762331 36762332 - A THRAP3 Frame_Shift_Ins p.T757Nfs*6 0.21 TCGA-BR-8360-01 1 38227513 38227513 G A EPHA10 Silent p.G138G 0.38 TCGA-BR-8360-01 1 38465063 38465064 CA - FHL3 Frame_Shift_Del p.A8Kfs*25 0.25 TCGA-BR-8360-01 1 40011509 40011509 T - PPIEL RNA 0.23 TCGA-BR-8360-01 1 40945114 40945114 G - ZFP69 Frame_Shift_Del p.A29Rfs*7 0.21 TCGA-BR-8360-01 1 41012975 41012975 A G ZNF684 Missense_Mutation p.Y327C 0.36 deleterious(0.03) possibly_damaging(0.456) TCGA-BR-8360-01 1 42049392 42049392 C T HIVEP3 Silent p.T359T 0.32 TCGA-BR-8360-01 1 43825904 43825904 C T CDC20 Silent p.A199A 0.28 TCGA-BR-8360-01 1 45501386 45501386 G T ZSWIM5 Silent p.S755S 0.28 TCGA-BR-8360-01 1 47717402 47717402 A G STIL Silent p.C1091C 0.18 TCGA-BR-8360-01 1 52403066 52403066 G A RAB3B Missense_Mutation p.R83W 0.36 deleterious(0) probably_damaging(1) TCGA-BR-8360-01 1 53516487 53516487 A G SCP2 3'UTR 0.30 TCGA-BR-8360-01 1 54476062 54476062 G A LDLRAD1 Missense_Mutation p.P121L 0.20 deleterious(0) probably_damaging(0.998) TCGA-BR-8360-01 1 55337163 55337163 G A DHCR24 Missense_Mutation p.R246W 0.32 tolerated(0.17) possibly_damaging(0.586) TCGA-BR-8360-01 1 6285064 6285064 C T ICMT 3'UTR 0.30 TCGA-BR-8360-01 1 67160990 67160990 T C SGIP1 Intron 0.42 TCGA-BR-8360-01 1 71512689 71512689 A T PTGER3 Missense_Mutation p.L191Q 0.25 deleterious(0) probably_damaging(0.999) TCGA-BR-8360-01 1 71512701 71512701 G T PTGER3 Missense_Mutation p.A187D 0.32 tolerated(0.21) possibly_damaging(0.756) TCGA-BR-8360-01 1 72748215 72748215 T C NEGR1 5'UTR 0.38 TCGA-BR-8360-01 1 7797322 7797322 C T CAMTA1 Missense_Mutation p.A1117V 0.29 deleterious(0) possibly_damaging(0.521) TCGA-BR-8360-01 1 85592282 85592282 G A WDR63 Missense_Mutation p.G734D 0.26 deleterious(0) probably_damaging(0.986) TCGA-BR-8360-01 1 89528741 89528741 A T GBP1 Silent p.A59A 0.25 TCGA-BR-8360-01 1 9427508 9427508 C T SPSB1 Silent p.P232P 0.33 TCGA-BR-8360-01 20 20484084 20484084 C T RALGAPA2 Missense_Mutation p.A1707T 0.36 tolerated(0.33) possibly_damaging(0.796) TCGA-BR-8360-01 20 23016316 23016316 G T SSTR4 Missense_Mutation p.A66S 0.29 tolerated(0.98) benign(0.104) TCGA-BR-8360-01 20 23065176 23065176 C T CD93 Missense_Mutation p.A552T 0.24 tolerated(0.31) benign(0) TCGA-BR-8360-01 20 24952096 24952096 G A APMAP Missense_Mutation p.R180C 0.33 deleterious(0.01) possibly_damaging(0.586) TCGA-BR-8360-01 20 24994689 24994689 C T ACSS1 Missense_Mutation p.A454T 0.32 tolerated(1) benign(0.217) TCGA-BR-8360-01 20 3007405 3007405 C T PTPRA Missense_Mutation p.R563C 0.15 deleterious(0.01) probably_damaging(1) TCGA-BR-8360-01 20 3147530 3147530 C T LZTS3 Missense_Mutation p.A94T 0.13 tolerated(0.25) benign(0) TCGA-BR-8360-01 20 31815476 31815476 G C BPIFA3 3'UTR 0.35 TCGA-BR-8360-01 20 32246607 32246607 C T NECAB3 Missense_Mutation p.A305T 0.21 tolerated(0.48) possibly_damaging(0.458) TCGA-BR-8360-01 20 33297184 33297184 G A TP53INP2 Missense_Mutation p.R90H 0.39 tolerated(0.13) benign(0.177) TCGA-BR-8360-01 20 33450750 33450750 C T GGT7 Missense_Mutation p.V142M 0.16 deleterious(0) probably_damaging(0.976) TCGA-BR-8360-01 20 3543988 3543988 A G ATRN Silent p.S588S 0.42 TCGA-BR-8360-01 20 36939000 36939000 G A BPI Missense_Mutation p.S165N 0.36 tolerated(0.14) benign(0.018) TCGA-BR-8360-01 20 3766457 3766457 A G CENPB Missense_Mutation p.L225P 0.07 deleterious(0) unknown(0) TCGA-BR-8360-01 20 42161428 42161428 G T L3MBTL1 Missense_Mutation p.G412C 0.26 deleterious(0) probably_damaging(0.926) TCGA-BR-8360-01 20 4229294 4229294 G A ADRA1D Missense_Mutation p.A104V 0.22 tolerated(0.07) benign(0.082) TCGA-BR-8360-01 20 44639956 44639956 G A MMP9 Splice_Site p.X275_splice 0.29 TCGA-BR-8360-01 20 47567893 47567893 G A ARFGEF2 Missense_Mutation p.A104T 0.34 tolerated(0.26) benign(0.027) TCGA-BR-8360-01 20 48156225 48156225 C T PTGIS Silent p.A185A 0.40 TCGA-BR-8360-01 20 50235243 50235243 G A ATP9A Missense_Mutation p.R770C 0.37 deleterious(0.01) possibly_damaging(0.832) TCGA-BR-8360-01 20 54824580 54824580 C T MC3R Silent p.A227A 0.36 TCGA-BR-8360-01 20 61525801 61525801 C A DIDO1 Missense_Mutation p.A846S 0.35 probably_damaging(0.998) TCGA-BR-8360-01 20 61978135 61978135 C T CHRNA4 Silent p.G613G 0.14 TCGA-BR-8360-01 20 62838987 62838987 C T MYT1 Silent p.I146I 0.33 TCGA-BR-8360-01 20 8698474 8698474 G A PLCB1 Missense_Mutation p.E498K 0.30 tolerated(0.16) benign(0.047) TCGA-BR-8360-01 21 10906876 10906876 T C TPTE 3'UTR 0.11 TCGA-BR-8360-01 21 28337989 28337989 T A ADAMTS5 Missense_Mutation p.Q241L 0.29 tolerated(0.23) benign(0.001) TCGA-BR-8360-01 21 30380774 30380774 C T RWDD2B Missense_Mutation p.R79Q 0.22 tolerated(0.27) benign(0.295) TCGA-BR-8360-01 21 31933432 31933432 A C KRTAP19-7 Silent p.S59S 0.29 TCGA-BR-8360-01 21 32253783 32253783 C T KRTAP11-1 Missense_Mutation p.V21I 0.29 tolerated(0.33) benign(0.006) TCGA-BR-8360-01 21 33370838 33370838 G A HUNK Splice_Site p.X496_splice 0.24 TCGA-BR-8360-01 21 34012041 34012041 G A SYNJ1 Missense_Mutation p.R1252W 0.11 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-BR-8360-01 21 35467627 35467627 C T SLC5A3 Missense_Mutation p.R44C 0.30 deleterious(0) probably_damaging(1) TCGA-BR-8360-01 21 41559141 41559141 C T DSCAM Missense_Mutation p.R899H 0.17 deleterious(0.01) possibly_damaging(0.863) TCGA-BR-8360-01 21 43161712 43161712 G A RIPK4 Silent p.H547H 0.31 TCGA-BR-8360-01 21 43496223 43496223 C T UMODL1 Silent p.G62G 0.24 TCGA-BR-8360-01 21 45706903 45706903 C T AIRE Missense_Mutation p.A117V 0.19 deleterious(0.05) benign(0.14) TCGA-BR-8360-01 21 45970648 45970648 A G KRTAP10-2 Missense_Mutation p.S232P 0.05 tolerated(0.05) unknown(0) TCGA-BR-8360-01 21 46685276 46685276 C A POFUT2 3'UTR 0.29 TCGA-BR-8360-01 21 46888235 46888235 C T COL18A1 Silent p.P242P 0.23 TCGA-BR-8360-01 22 17444669 17444669 C T GAB4 Silent p.P509P 0.32 TCGA-BR-8360-01 22 18387473 18387473 T C MICAL3 Missense_Mutation p.T133A 0.28 benign(0.438) TCGA-BR-8360-01 22 21372319 21372319 G A P2RX6 Silent p.T119T 0.21 TCGA-BR-8360-01 22 24124566 24124566 G A MMP11 Missense_Mutation p.R410H 0.21 deleterious(0) probably_damaging(0.987) TCGA-BR-8360-01 22 24515545 24515545 G A CABIN1 Silent p.Q1504Q 0.43 TCGA-BR-8360-01 22 24964106 24964106 G T SNRPD3 Missense_Mutation p.G94V 0.16 tolerated(0.05) benign(0.006) TCGA-BR-8360-01 22 26286802 26286802 C A MYO18B Missense_Mutation p.A1465E 0.17 deleterious(0) probably_damaging(0.972) TCGA-BR-8360-01 22 29886699 29886699 G T NEFH 3'UTR 0.27 TCGA-BR-8360-01 22 30189452 30189452 G A ASCC2 Missense_Mutation p.P606S 0.12 tolerated(0.83) benign(0.001) TCGA-BR-8360-01 22 30951991 30951991 G A GAL3ST1 Missense_Mutation p.P74L 0.26 deleterious(0) possibly_damaging(0.449) TCGA-BR-8360-01 22 31685264 31685266 CCT - PIK3IP1 Intron 0.19 TCGA-BR-8360-01 22 32270319 32270319 G A DEPDC5 Silent p.A1199A 0.20 TCGA-BR-8360-01 22 37699399 37699399 C T CYTH4 Missense_Mutation p.R218C 0.29 deleterious(0) probably_damaging(0.996) TCGA-BR-8360-01 22 37769395 37769395 C T ELFN2 Missense_Mutation p.R727H 0.56 deleterious(0) probably_damaging(0.932) TCGA-BR-8360-01 22 39146966 39146966 G A SUN2 Missense_Mutation p.R121C 0.36 deleterious(0) benign(0.247) TCGA-BR-8360-01 22 41650390 41650390 C T RANGAP1 Silent p.E394E 0.54 TCGA-BR-8360-01 22 44342618 44342618 G - PNPLA3 3'UTR 0.33 TCGA-BR-8360-01 22 50304114 50304114 C T ALG12 Missense_Mutation p.R146Q 0.49 possibly_damaging(0.788) TCGA-BR-8360-01 22 50942825 50942825 G T LMF2 Silent p.P554P 0.25 TCGA-BR-8360-01 2 101023061 101023061 G A CHST10 Missense_Mutation p.T26M 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.654) TCGA-BR-8360-01 2 101606806 101606806 C A NPAS2 Missense_Mutation p.A639D 0.31 tolerated(0.26) benign(0.157) TCGA-BR-8360-01 2 105858503 105858503 C T GPR45 Missense_Mutation p.P63L 0.31 deleterious(0) possibly_damaging(0.716) TCGA-BR-8360-01 2 10918696 10918696 A T ATP6V1C2 Splice_Site p.X322_splice 0.07 TCGA-BR-8360-01 2 109545660 109545664 AGGCA - EDAR Frame_Shift_Del p.C116Pfs*137 0.13 TCGA-BR-8360-01 2 113514492 113514492 C T CKAP2L Silent p.Q152Q 0.30 TCGA-BR-8360-01 2 118864334 118864334 A G INSIG2 Missense_Mutation p.I131V 0.27 tolerated(1) benign(0.001) TCGA-BR-8360-01 2 11907961 11907961 G A LPIN1 Missense_Mutation p.V138I 0.27 deleterious(0.02) probably_damaging(0.957) TCGA-BR-8360-01 2 120005667 120005667 G A STEAP3 Missense_Mutation p.R312H 0.38 deleterious(0) probably_damaging(0.999) TCGA-BR-8360-01 2 121684992 121684992 C T GLI2 Silent p.H68H 0.29 TCGA-BR-8360-01 2 128238676 128238676 T - IWS1 Frame_Shift_Del p.S802Afs*7 0.30 TCGA-BR-8360-01 2 128252502 128252502 T - IWS1 Frame_Shift_Del p.K582Sfs*4 0.21 TCGA-BR-8360-01 2 128262790 128262790 G - IWS1 Frame_Shift_Del p.P230Qfs*160 0.21 TCGA-BR-8360-01 2 130951495 130951495 G T TUBA3E Missense_Mutation p.P307H 0.23 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-BR-8360-01 2 131520225 131520225 G - AMER3 Frame_Shift_Del p.R196Gfs*70 0.21 TCGA-BR-8360-01 2 132021451 132021451 C - POTEE Frame_Shift_Del p.L810* 0.25 TCGA-BR-8360-01 2 133402811 133402811 T - GPR39 Frame_Shift_Del p.F333Sfs*78 0.31 TCGA-BR-8360-01 2 133403596 133403596 G - LYPD1 3'UTR 0.33 TCGA-BR-8360-01 2 135848572 135848572 T C RAB3GAP1 Missense_Mutation p.I52T 0.27 tolerated(0.13) benign(0.005) TCGA-BR-8360-01 2 135988401 135988401 G A ZRANB3 Missense_Mutation p.R546W 0.33 deleterious(0) benign(0.024) TCGA-BR-8360-01 2 137988713 137988713 C T THSD7B Missense_Mutation p.T608M 0.33 deleterious(0.01) possibly_damaging(0.851) TCGA-BR-8360-01 2 138758556 138758558 GTT - HNMT In_Frame_Del p.V88del 0.36 TCGA-BR-8360-01 2 141607887 141607887 A T LRP1B Missense_Mutation p.F1575I 0.30 benign(0.307) TCGA-BR-8360-01 2 149227818 149227818 T C MBD5 Missense_Mutation p.V769A 0.28 tolerated(0.15) benign(0.294) TCGA-BR-8360-01 2 152347012 152347012 G A NEB Missense_Mutation p.R8391W 0.38 probably_damaging(0.921) TCGA-BR-8360-01 2 15534390 15534390 C T NBAS Missense_Mutation p.R1073H 0.51 tolerated(0.39) benign(0.015) TCGA-BR-8360-01 2 160335159 160335161 AGA - BAZ2B In_Frame_Del p.S24del 0.35 TCGA-BR-8360-01 2 163292018 163292018 G A KCNH7 Silent p.G548G 0.20 TCGA-BR-8360-01 2 1652889 1652889 C T PXDN Missense_Mutation p.G888D 0.32 deleterious(0.03) probably_damaging(0.999) TCGA-BR-8360-01 2 166245809 166245809 A T SCN2A Silent p.I1831I 0.28 TCGA-BR-8360-01 2 167055493 167055493 G A SCN9A Missense_Mutation p.R1875W 0.31 tolerated(0.15) probably_damaging(1) TCGA-BR-8360-01 2 168099958 168099958 G - XIRP2 Frame_Shift_Del p.D688Mfs*5 0.29 TCGA-BR-8360-01 2 168103736 168103737 - A XIRP2 Frame_Shift_Ins p.D1948Rfs*3 0.22 TCGA-BR-8360-01 2 168106617 168106617 A C XIRP2 Missense_Mutation p.Q2905H 0.30 benign(0.053) TCGA-BR-8360-01 2 168115319 168115319 A G XIRP2 3'UTR 0.20 TCGA-BR-8360-01 2 170058203 170058203 C T LRP2 Missense_Mutation p.R2796H 0.18 possibly_damaging(0.671) TCGA-BR-8360-01 2 176995424 176995424 T - HOXD8 Frame_Shift_Del p.P111Lfs*66 0.14 TCGA-BR-8360-01 2 179648873 179648873 T - TTN Frame_Shift_Del p.K900Rfs*3 0.25 TCGA-BR-8360-01 2 197511222 197511222 A - CCDC150 Frame_Shift_Del p.R59Efs*10 0.27 TCGA-BR-8360-01 2 200137257 200137257 C A SATB2 Missense_Mutation p.G627W 0.24 deleterious(0) probably_damaging(0.999) TCGA-BR-8360-01 2 201473845 201473845 T A AOX1 Missense_Mutation p.I349N 0.16 deleterious(0) probably_damaging(1) TCGA-BR-8360-01 2 202626188 202626188 C T ALS2 Missense_Mutation p.G177S 0.35 deleterious(0) probably_damaging(1) TCGA-BR-8360-01 2 203139835 203139835 G T NOP58 Splice_Site p.X16_splice 0.24 TCGA-BR-8360-01 2 20451242 20451242 A - PUM2 3'UTR 0.36 TCGA-BR-8360-01 2 205829969 205829969 C T PARD3B Missense_Mutation p.T106I 0.35 deleterious(0.03) possibly_damaging(0.867) TCGA-BR-8360-01 2 206023539 206023539 G A PARD3B Intron 0.27 TCGA-BR-8360-01 2 210880764 210880764 G A RPE Silent p.Q90Q 0.25 TCGA-BR-8360-01 2 217279576 217279576 A G SMARCAL1 Missense_Mutation p.K50R 0.23 tolerated_low_confidence(0.17) benign(0.01) TCGA-BR-8360-01 2 219529010 219529010 G A RNF25 Silent p.P350P 0.39 TCGA-BR-8360-01 2 219855029 219855029 A C CRYBA2 Missense_Mutation p.L180R 0.16 deleterious(0) benign(0.143) TCGA-BR-8360-01 2 220037570 220037570 G - CNPPD1 Frame_Shift_Del p.P324Qfs*89 0.24 TCGA-BR-8360-01 2 220081103 220081103 C - ABCB6 Frame_Shift_Del p.G318Vfs*9 0.30 TCGA-BR-8360-01 2 220332024 220332024 C T SPEG Missense_Mutation p.R1004C 0.26 probably_damaging(0.997) TCGA-BR-8360-01 2 225266179 225266179 G A FAM124B Missense_Mutation p.R103W 0.28 tolerated(0.06) benign(0) TCGA-BR-8360-01 2 228235653 228235653 G T TM4SF20 Missense_Mutation p.A76E 0.27 deleterious(0.01) benign(0.057) TCGA-BR-8360-01 2 231740484 231740484 C T ITM2C Silent p.G137G 0.15 TCGA-BR-8360-01 2 233899664 233899664 C - NEU2 Frame_Shift_Del p.L349Cfs*21 0.24 TCGA-BR-8360-01 2 234749823 234749823 G A HJURP Missense_Mutation p.R535C 0.24 tolerated(0.28) benign(0.353) TCGA-BR-8360-01 2 238462335 238462335 C A MLPH 3'UTR 0.15 TCGA-BR-8360-01 2 238881818 238881818 G A UBE2F Silent p.A23A 0.34 TCGA-BR-8360-01 2 239079235 239079235 G A ILKAP Missense_Mutation p.A374V 0.24 deleterious(0) probably_damaging(0.999) TCGA-BR-8360-01 2 240969019 240969019 G A OR6B2 Silent p.A276A 0.46 TCGA-BR-8360-01 2 241726711 241726711 C T KIF1A Missense_Mutation p.R129Q 0.40 deleterious(0) possibly_damaging(0.608) TCGA-BR-8360-01 2 242135202 242135202 G T ANO7 Missense_Mutation p.R138M 0.27 tolerated(0.06) possibly_damaging(0.593) TCGA-BR-8360-01 2 242265515 242265515 A G SEPT2 Silent p.T39T 0.50 TCGA-BR-8360-01 2 25650468 25650468 G A DTNB Missense_Mutation p.S497L 0.29 deleterious(0.04) probably_damaging(0.959) TCGA-BR-8360-01 2 26699057 26699057 C A OTOF Missense_Mutation p.E935D 0.22 tolerated(0.12) probably_damaging(0.986) TCGA-BR-8360-01 2 26804180 26804180 C T CIB4 3'UTR 0.31 TCGA-BR-8360-01 2 27355197 27355197 T C PREB Missense_Mutation p.Q276R 0.30 tolerated(0.66) benign(0.001) TCGA-BR-8360-01 2 27426696 27426696 G A SLC5A6 Missense_Mutation p.P349S 0.35 deleterious(0) probably_damaging(0.996) TCGA-BR-8360-01 2 27684682 27684682 C T IFT172 Missense_Mutation p.G713S 0.08 tolerated(0.18) benign(0.003) TCGA-BR-8360-01 2 3392378 3392378 C T TRAPPC12 Silent p.R328R 0.31 TCGA-BR-8360-01 2 47639588 47639588 A - MSH2 Frame_Shift_Del p.A230Lfs*16 0.23 TCGA-BR-8360-01 2 55544857 55544857 G A CCDC88A Silent p.L1148L 0.29 TCGA-BR-8360-01 2 64863927 64863927 C T SERTAD2 Missense_Mutation p.G27S 0.23 tolerated(0.08) benign(0.081) TCGA-BR-8360-01 2 71216123 71216123 G T TEX261 Missense_Mutation p.L133M 0.38 tolerated(0.08) probably_damaging(0.974) TCGA-BR-8360-01 2 71629219 71629219 T C ZNF638 Splice_Site p.X943_splice 0.28 TCGA-BR-8360-01 2 71797446 71797446 C T DYSF Missense_Mutation p.R1023W 0.28 deleterious(0) probably_damaging(1) TCGA-BR-8360-01 2 71801367 71801367 G A DYSF Missense_Mutation p.A1090T 0.37 deleterious(0) probably_damaging(0.977) TCGA-BR-8360-01 2 73487661 73487661 G A FBXO41 Missense_Mutation p.R769W 0.29 deleterious(0) possibly_damaging(0.855) TCGA-BR-8360-01 2 74452131 74452132 GA - SLC4A5 Intron 0.22 TCGA-BR-8360-01 2 74597439 74597439 C T DCTN1 Silent p.E387E 0.31 TCGA-BR-8360-01 2 74701702 74701702 A - CCDC142 Frame_Shift_Del p.S735Pfs*52 0.21 TCGA-BR-8360-01 2 85280302 85280302 C T KCMF1 Missense_Mutation p.R306C 0.25 deleterious(0.01) possibly_damaging(0.642) TCGA-BR-8360-01 2 86254525 86254525 C T POLR1A 3'UTR 0.22 TCGA-BR-8360-01 2 88828731 88828731 C A TEX37 Silent p.A94A 0.36 TCGA-BR-8360-01 2 88885399 88885399 G A EIF2AK3 Missense_Mutation p.T537M 0.25 deleterious(0.01) probably_damaging(0.961) TCGA-BR-8360-01 2 96789817 96789817 T G ASTL Silent p.A356A 0.23 TCGA-BR-8360-01 2 97749725 97749725 G - FAHD2B Frame_Shift_Del p.P281Qfs*26 0.24 TCGA-BR-8360-01 2 97875579 97875580 - A ANKRD36 Frame_Shift_Ins p.D1116Gfs*6 0.20 TCGA-BR-8360-01 3 101445494 101445494 T C CEP97 Missense_Mutation p.C34R 0.35 deleterious(0.01) benign(0.418) TCGA-BR-8360-01 3 105250904 105250904 A - ALCAM Frame_Shift_Del p.K153Sfs*34 0.25 TCGA-BR-8360-01 3 112005609 112005610 - A SLC9C1 Frame_Shift_Ins p.S11Qfs*3 0.33 TCGA-BR-8360-01 3 122646705 122646705 G T SEMA5B Missense_Mutation p.A315D 0.29 deleterious(0) probably_damaging(0.956) TCGA-BR-8360-01 3 123667978 123667978 T C CCDC14 Silent p.A125A 0.47 TCGA-BR-8360-01 3 124281775 124281775 C T KALRN Missense_Mutation p.T45M 0.22 deleterious(0) possibly_damaging(0.895) TCGA-BR-8360-01 3 125701213 125701213 C T ROPN1B Missense_Mutation p.T166M 0.32 deleterious(0.03) benign(0.21) TCGA-BR-8360-01 3 125844513 125844513 C T ALDH1L1 Nonsense_Mutation p.W592* 0.23 TCGA-BR-8360-01 3 126260961 126260961 C T CHST13 Missense_Mutation p.A189V 0.33 deleterious(0.01) benign(0.08) TCGA-BR-8360-01 3 126707619 126707619 C T PLXNA1 Silent p.G61G 0.16 TCGA-BR-8360-01 3 129198657 129198657 C T IFT122 Silent p.S511S 0.05 TCGA-BR-8360-01 3 130732962 130732962 C T ASTE1 Missense_Mutation p.R660Q 0.30 deleterious(0) probably_damaging(0.925) TCGA-BR-8360-01 3 133306657 133306658 - T CDV3 Intron 0.48 TCGA-BR-8360-01 3 133647147 133647147 G A C3orf36 3'UTR 0.27 TCGA-BR-8360-01 3 141164326 141164326 C T ZBTB38 Silent p.H1032H 0.30 TCGA-BR-8360-01 3 148459909 148459909 C T AGTR1 3'UTR 0.31 TCGA-BR-8360-01 3 15094033 15094033 T C MRPS25 Missense_Mutation p.Q146R 0.33 deleterious(0) probably_damaging(0.998) TCGA-BR-8360-01 3 155633847 155633849 GAG - GMPS In_Frame_Del p.E361del 0.42 TCGA-BR-8360-01 3 164781250 164781250 A - SI Frame_Shift_Del p.L296* 0.22 TCGA-BR-8360-01 3 167507093 167507093 G C SERPINI1 Missense_Mutation p.M59I 0.20 tolerated(0.08) benign(0.023) TCGA-BR-8360-01 3 167507159 167507159 A - SERPINI1 Frame_Shift_Del p.N83Mfs*8 0.27 TCGA-BR-8360-01 3 168833257 168833257 T - MECOM Frame_Shift_Del p.G679Efs*30 0.25 TCGA-BR-8360-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.29 tolerated(0.11) possibly_damaging(0.529) TCGA-BR-8360-01 3 183368863 183368863 C T KLHL24 Missense_Mutation p.A240V 0.16 tolerated(0.12) benign(0.139) TCGA-BR-8360-01 3 184025728 184025728 C T PSMD2 Silent p.S783S 0.37 TCGA-BR-8360-01 3 184038339 184038339 C A EIF4G1 Intron 0.45 TCGA-BR-8360-01 3 184101309 184101309 A G CHRD Splice_Site p.X441_splice 0.21 TCGA-BR-8360-01 3 194118899 194118899 C - GP5 Frame_Shift_Del p.G38Afs*9 0.34 TCGA-BR-8360-01 3 195488372 195488372 A - MUC4 Frame_Shift_Del p.F4866Sfs*5 0.22 TCGA-BR-8360-01 3 21462764 21462764 C T ZNF385D Missense_Mutation p.R377Q 0.33 deleterious(0) possibly_damaging(0.885) TCGA-BR-8360-01 3 23631346 23631346 G A UBE2E2 3'UTR 0.24 TCGA-BR-8360-01 3 27183068 27183068 C T NEK10 Missense_Mutation p.A1016T 0.30 deleterious(0.03) probably_damaging(0.999) TCGA-BR-8360-01 3 27346260 27346260 G A NEK10 Nonsense_Mutation p.Q336* 0.40 TCGA-BR-8360-01 3 32495741 32495741 G A CMTM7 Missense_Mutation p.V175I 0.37 deleterious(0.05) benign(0.013) TCGA-BR-8360-01 3 36898206 36898206 C T TRANK1 Missense_Mutation p.E959K 0.35 deleterious(0.05) benign(0.013) TCGA-BR-8360-01 3 38768331 38768331 G T SCN10A Silent p.L951L 0.06 TCGA-BR-8360-01 3 39374508 39374508 A - CCR8 Frame_Shift_Del p.N230Tfs*45 0.24 TCGA-BR-8360-01 3 45637565 45637565 G A LIMD1 Silent p.E398E 0.31 TCGA-BR-8360-01 3 46307111 46307111 C A CCR3 Missense_Mutation p.S175R 0.36 deleterious(0) probably_damaging(0.998) TCGA-BR-8360-01 3 47378106 47378106 G T KLHL18 Missense_Mutation p.S327I 0.33 deleterious(0) possibly_damaging(0.848) TCGA-BR-8360-01 3 47378108 47378108 C T KLHL18 Missense_Mutation p.R328C 0.33 deleterious(0.01) probably_damaging(0.93) TCGA-BR-8360-01 3 48462789 48462789 A - PLXNB1 Frame_Shift_Del p.F553Sfs*29 0.09 TCGA-BR-8360-01 3 48698167 48698167 G A CELSR3 Missense_Mutation p.T634M 0.37 deleterious(0) probably_damaging(0.989) TCGA-BR-8360-01 3 49166186 49166186 C T LAMB2 Missense_Mutation p.V600M 0.33 deleterious(0.01) possibly_damaging(0.556) TCGA-BR-8360-01 3 49743092 49743092 G A RNF123 Missense_Mutation p.V762I 0.12 tolerated(0.08) possibly_damaging(0.641) TCGA-BR-8360-01 3 49760467 49760467 C T GMPPB Missense_Mutation p.D114N 0.23 tolerated(0.31) benign(0.045) TCGA-BR-8360-01 3 49949043 49949043 C A MON1A Missense_Mutation p.A274S 0.35 deleterious(0.05) possibly_damaging(0.592) TCGA-BR-8360-01 3 49949063 49949063 G A MON1A Missense_Mutation p.S267F 0.34 deleterious(0.01) probably_damaging(0.974) TCGA-BR-8360-01 3 51749144 51749144 G A GRM2 Missense_Mutation p.R452H 0.32 deleterious(0.01) probably_damaging(0.934) TCGA-BR-8360-01 3 52418887 52418887 C A DNAH1 Missense_Mutation p.T2803N 0.17 probably_damaging(1) TCGA-BR-8360-01 3 55513591 55513591 A G WNT5A Missense_Mutation p.S48P 0.12 tolerated(0.07) benign(0.062) TCGA-BR-8360-01 3 62189448 62189448 G T PTPRG Missense_Mutation p.R660M 0.32 tolerated(0.13) benign(0.031) TCGA-BR-8360-01 3 63825431 63825431 C T THOC7 Missense_Mutation p.R13H 0.29 deleterious(0) probably_damaging(0.997) TCGA-BR-8360-01 3 71739264 71739266 GAC - EIF4E3 In_Frame_Del p.V175del 0.31 TCGA-BR-8360-01 3 73450150 73450150 C T PDZRN3 Missense_Mutation p.A393T 0.34 tolerated(0.52) benign(0.002) TCGA-BR-8360-01 3 78796020 78796020 G A ROBO1 Missense_Mutation p.S177L 0.18 tolerated(0.13) benign(0.228) TCGA-BR-8360-01 3 8669438 8669438 C T SSUH2 Missense_Mutation p.R207H 0.33 tolerated(0.13) benign(0.055) TCGA-BR-8360-01 3 9798837 9798837 G - OGG1 Intron 0.29 TCGA-BR-8360-01 3 99569681 99569681 C A FILIP1L Missense_Mutation p.R280I 0.25 deleterious(0.01) possibly_damaging(0.866) TCGA-BR-8360-01 4 100212135 100212135 A G ADH1A 5'UTR 0.22 TCGA-BR-8360-01 4 103553381 103553381 C T MANBA Missense_Mutation p.A825T 0.21 deleterious(0.02) possibly_damaging(0.465) TCGA-BR-8360-01 4 10448061 10448061 A G ZNF518B 5'UTR 0.19 TCGA-BR-8360-01 4 106157193 106157193 G T TET2 Silent p.V698V 0.22 TCGA-BR-8360-01 4 106621122 106621122 A - INTS12 Frame_Shift_Del p.L14* 0.21 TCGA-BR-8360-01 4 1107259 1107259 C T RNF212 5'UTR 0.38 TCGA-BR-8360-01 4 1165659 1165659 C T SPON2 Silent p.A67A 0.40 TCGA-BR-8360-01 4 118005713 118005713 C T TRAM1L1 Silent p.S279S 0.17 TCGA-BR-8360-01 4 126336826 126336826 C T FAT4 Silent p.S2236S 0.62 TCGA-BR-8360-01 4 128632225 128632225 C T INTU Missense_Mutation p.R843C 0.59 deleterious(0) probably_damaging(0.994) TCGA-BR-8360-01 4 141327187 141327188 CT - CLGN Frame_Shift_Del p.G110Tfs*6 0.38 TCGA-BR-8360-01 4 144471250 144471250 A T SMARCA5 Missense_Mutation p.K1029M 0.27 deleterious(0.02) possibly_damaging(0.806) TCGA-BR-8360-01 4 146824292 146824292 G A ZNF827 Missense_Mutation p.P40L 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8360-01 4 148744110 148744110 T C ARHGAP10 Splice_Site p.X104_splice 0.66 TCGA-BR-8360-01 4 152624954 152624954 C T PET112 Intron 0.71 TCGA-BR-8360-01 4 153249385 153249385 G A FBXW7 Missense_Mutation p.R465C 0.26 deleterious(0) probably_damaging(1) TCGA-BR-8360-01 4 153881743 153881743 C T FHDC1 Silent p.G230G 0.66 TCGA-BR-8360-01 4 155312366 155312366 G T DCHS2 Silent p.A28A 0.56 TCGA-BR-8360-01 4 174450000 174450000 G A HAND2 Silent p.Y147Y 0.62 TCGA-BR-8360-01 4 175898770 175898771 - A ADAM29 Frame_Shift_Ins p.S701Kfs*2 0.27 TCGA-BR-8360-01 4 1803616 1803616 C T FGFR3 Missense_Mutation p.A265V 0.36 tolerated(0.69) benign(0.008) TCGA-BR-8360-01 4 184589196 184589196 C T TRAPPC11 Silent p.C162C 0.24 TCGA-BR-8360-01 4 185340707 185340708 - A IRF2 Frame_Shift_Ins p.Q35Sfs*9 0.37 TCGA-BR-8360-01 4 186318062 186318062 C T ANKRD37 5'UTR 0.62 TCGA-BR-8360-01 4 1961359 1961359 C T WHSC1 Silent p.G1049G 0.38 TCGA-BR-8360-01 4 26483548 26483548 G A CCKAR Silent p.N333N 0.32 TCGA-BR-8360-01 4 3015460 3015460 A - GRK4 Frame_Shift_Del p.K217Sfs*7 0.23 TCGA-BR-8360-01 4 30724440 30724440 G A PCDH7 Missense_Mutation p.V466M 0.22 deleterious(0.02) probably_damaging(0.945) TCGA-BR-8360-01 4 38776168 38776168 C T TLR10 Silent p.T348T 0.25 TCGA-BR-8360-01 4 39450320 39450320 C T KLB 3'UTR 0.31 TCGA-BR-8360-01 4 42400102 42400102 T C SHISA3 Missense_Mutation p.L10P 0.38 deleterious_low_confidence(0.01) unknown(0) TCGA-BR-8360-01 4 42581864 42581864 C T ATP8A1 Silent p.R322R 0.27 TCGA-BR-8360-01 4 47939172 47939172 T - CNGA1 Frame_Shift_Del p.T516Qfs*8 0.19 TCGA-BR-8360-01 4 52945919 52945919 C T SPATA18 Nonsense_Mutation p.R397* 0.30 TCGA-BR-8360-01 4 55968171 55968171 C T KDR Missense_Mutation p.R720Q 0.27 tolerated(1) benign(0.046) TCGA-BR-8360-01 4 5981913 5981913 C T C4orf50 Silent p.E526E 0.30 TCGA-BR-8360-01 4 6107634 6107634 G A JAKMIP1 Missense_Mutation p.R64W 0.23 deleterious(0) possibly_damaging(0.889) TCGA-BR-8360-01 4 6296826 6296826 C T WFS1 Silent p.G257G 0.34 TCGA-BR-8360-01 4 6302499 6302499 C T WFS1 Missense_Mutation p.A326V 0.32 tolerated(0.05) probably_damaging(0.972) TCGA-BR-8360-01 4 656381 656381 C T PDE6B Silent p.R602R 0.23 TCGA-BR-8360-01 4 70148363 70148363 G A UGT2B28 Missense_Mutation p.A285T 0.19 deleterious(0.01) possibly_damaging(0.517) TCGA-BR-8360-01 4 74442417 74442417 C T RASSF6 Silent p.P283P 0.20 TCGA-BR-8360-01 4 860221 860221 C T GAK Missense_Mutation p.V992I 0.30 tolerated(0.09) benign(0.002) TCGA-BR-8360-01 4 87691300 87691302 TTC G PTPN13 Frame_Shift_Del p.L1589Rfs*13 0.27 TCGA-BR-8360-01 4 95496845 95496845 G A PDLIM5 Intron 0.26 TCGA-BR-8360-01 5 102537308 102537309 - A PPIP5K2 Frame_Shift_Ins p.N1217Kfs*10 0.40 TCGA-BR-8360-01 5 1075484 1075484 A G SLC12A7 Splice_Site p.X656_splice 0.31 TCGA-BR-8360-01 5 113798824 113798824 T G KCNN2 Silent p.G360G 0.26 TCGA-BR-8360-01 5 115782765 115782765 G - SEMA6A Frame_Shift_Del p.V881Ffs*20 0.29 TCGA-BR-8360-01 5 126746114 126746114 C T MEGF10 Silent p.G317G 0.17 TCGA-BR-8360-01 5 129244011 129244011 C T CHSY3 Silent p.C348C 0.27 TCGA-BR-8360-01 5 134059335 134059335 T - SEC24A Frame_Shift_Del p.F1049Sfs*6 0.23 TCGA-BR-8360-01 5 137284728 137284728 T - FAM13B Frame_Shift_Del p.K670Nfs*15 0.28 TCGA-BR-8360-01 5 13781052 13781052 C T DNAH5 Missense_Mutation p.R2946H 0.29 possibly_damaging(0.812) TCGA-BR-8360-01 5 138160446 138160446 T A CTNNA1 Silent p.G272G 0.23 TCGA-BR-8360-01 5 138718275 138718275 G T SLC23A1 Missense_Mutation p.P19H 0.30 tolerated(0.14) benign(0.402) TCGA-BR-8360-01 5 139876355 139876355 G A ANKHD1 Silent p.K832K 0.22 TCGA-BR-8360-01 5 139918632 139918632 T C ANKHD1 Silent p.V2511V 0.31 TCGA-BR-8360-01 5 139947624 139947624 C T SLC35A4 Silent p.N290N 0.24 TCGA-BR-8360-01 5 140188676 140188676 G A PCDHA4 Missense_Mutation p.R635H 0.41 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-BR-8360-01 5 140202836 140202836 G A PCDHA5 Silent p.S492S 0.29 TCGA-BR-8360-01 5 140229691 140229691 G A PCDHA9 Silent p.A537A 0.33 TCGA-BR-8360-01 5 140530024 140530024 C T PCDHB6 Silent p.G62G 0.37 TCGA-BR-8360-01 5 140734826 140734826 T G PCDHGA4 Missense_Mutation p.L20R 0.19 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-BR-8360-01 5 140789059 140789059 G A PCDHGB6 Silent p.P430P 0.32 TCGA-BR-8360-01 5 14297342 14297342 G A TRIO Missense_Mutation p.M446I 0.37 probably_damaging(0.968) TCGA-BR-8360-01 5 149756083 149756083 C T TCOF1 Missense_Mutation p.T747M 0.34 tolerated(0.18) probably_damaging(0.998) TCGA-BR-8360-01 5 149901098 149901098 G A NDST1 Silent p.S94S 0.33 TCGA-BR-8360-01 5 149927851 149927851 C T NDST1 Silent p.D739D 0.21 TCGA-BR-8360-01 5 150932777 150932777 C T FAT2 Missense_Mutation p.V1373I 0.32 benign(0.202) TCGA-BR-8360-01 5 154065379 154065383 TTTTA - MIR1303 RNA 0.38 TCGA-BR-8360-01 5 15936821 15936821 C T FBXL7 Silent p.C334C 0.29 TCGA-BR-8360-01 5 16067654 16067654 G A MARCH11 Missense_Mutation p.R379W 0.34 deleterious(0) probably_damaging(0.96) TCGA-BR-8360-01 5 167812251 167812251 C T WWC1 Missense_Mutation p.R89W 0.26 deleterious(0) probably_damaging(0.994) TCGA-BR-8360-01 5 168096822 168096822 G A SLIT3 Silent p.C1434C 0.21 TCGA-BR-8360-01 5 169931586 169931586 G A KCNIP1 Missense_Mutation p.V4I 0.20 tolerated_low_confidence(0.45) benign(0.002) TCGA-BR-8360-01 5 172744927 172744927 C T STC2 Missense_Mutation p.G278S 0.26 tolerated_low_confidence(0.28) benign(0.008) TCGA-BR-8360-01 5 175110591 175110591 G A HRH2 Missense_Mutation p.A119T 0.25 deleterious(0) probably_damaging(0.999) TCGA-BR-8360-01 5 176025084 176025084 C T GPRIN1 Silent p.P584P 0.32 TCGA-BR-8360-01 5 176931829 176931829 T C DOK3 Missense_Mutation p.D243G 0.27 deleterious(0.05) probably_damaging(0.987) TCGA-BR-8360-01 5 178359583 178359583 A G ZFP2 Silent p.S423S 0.08 TCGA-BR-8360-01 5 178413361 178413361 A C GRM6 Missense_Mutation p.F632V 0.17 deleterious(0) benign(0.395) TCGA-BR-8360-01 5 178557042 178557042 G T ADAMTS2 Missense_Mutation p.A783D 0.38 tolerated(0.08) benign(0.351) TCGA-BR-8360-01 5 178634558 178634558 C T ADAMTS2 Missense_Mutation p.G283R 0.28 deleterious(0.01) possibly_damaging(0.78) TCGA-BR-8360-01 5 179036539 179036539 A G RUFY1 3'UTR 0.50 TCGA-BR-8360-01 5 180664659 180664659 T C GNB2L1 Missense_Mutation p.K280E 0.35 tolerated(0.05) benign(0.372) TCGA-BR-8360-01 5 24491847 24491847 C A CDH10 Missense_Mutation p.D572Y 0.31 deleterious(0) probably_damaging(0.998) TCGA-BR-8360-01 5 2749021 2749021 C T IRX2 Silent p.E267E 0.19 TCGA-BR-8360-01 5 32089364 32089364 T C PDZD2 Missense_Mutation p.V1937A 0.30 tolerated(0.48) benign(0) TCGA-BR-8360-01 5 38923329 38923329 A - OSMR Frame_Shift_Del p.T617Qfs*20 0.17 TCGA-BR-8360-01 5 38958851 38958851 A G RICTOR Missense_Mutation p.L754S 0.20 deleterious(0) probably_damaging(0.982) TCGA-BR-8360-01 5 5232558 5232558 T G ADAMTS16 Silent p.S593S 0.34 TCGA-BR-8360-01 5 56177584 56177584 C T MAP3K1 Missense_Mutation p.R853C 0.28 deleterious(0) probably_damaging(0.976) TCGA-BR-8360-01 5 61770245 61770245 T - IPO11 Frame_Shift_Del p.L279Yfs*8 0.23 TCGA-BR-8360-01 5 64020298 64020298 T - SREK1IP1 Frame_Shift_Del p.K129Nfs*29 0.25 TCGA-BR-8360-01 5 71495988 71495988 C A MAP1B Missense_Mutation p.A2269E 0.28 possibly_damaging(0.78) TCGA-BR-8360-01 5 72424240 72424240 C - TMEM171 Frame_Shift_Del p.P223Lfs*123 0.22 TCGA-BR-8360-01 5 7520977 7520977 G A ADCY2 Missense_Mutation p.A179T 0.25 tolerated(0.7) benign(0.001) TCGA-BR-8360-01 5 75913544 75913544 A T F2RL2 Missense_Mutation p.Y330N 0.31 tolerated(0.14) benign(0.006) TCGA-BR-8360-01 5 79027051 79027051 A G CMYA5 Silent p.Q821Q 0.33 TCGA-BR-8360-01 5 79355673 79355673 G T THBS4 Missense_Mutation p.G311V 0.26 deleterious(0) probably_damaging(0.998) TCGA-BR-8360-01 5 80363869 80363869 T C RASGRF2 Silent p.I138I 0.30 TCGA-BR-8360-01 5 80382675 80382675 C T RASGRF2 Silent p.S431S 0.33 TCGA-BR-8360-01 5 90004680 90004680 C T GPR98 Silent p.Y2926Y 0.29 TCGA-BR-8360-01 5 92921054 92921056 TTC - NR2F1 In_Frame_Del p.F110del 0.41 TCGA-BR-8360-01 6 100895166 100895166 C T SIM1 Missense_Mutation p.V326I 0.35 tolerated(0.11) probably_damaging(0.999) TCGA-BR-8360-01 6 107391602 107391602 C - BEND3 Frame_Shift_Del p.D265Tfs*54 0.17 TCGA-BR-8360-01 6 107391957 107391957 C T BEND3 Silent p.S146S 0.30 TCGA-BR-8360-01 6 111498611 111498611 G T SLC16A10 Missense_Mutation p.G229C 0.21 deleterious(0) probably_damaging(0.98) TCGA-BR-8360-01 6 117073613 117073613 A - FAM162B 3'UTR 0.31 TCGA-BR-8360-01 6 124125394 124125394 C T NKAIN2 Nonsense_Mutation p.Q17* 0.30 TCGA-BR-8360-01 6 130164727 130164727 C A TMEM244 Silent p.L47L 0.32 TCGA-BR-8360-01 6 137815350 137815350 C T OLIG3 5'UTR 0.22 TCGA-BR-8360-01 6 144269239 144269239 G A PLAGL1 Missense_Mutation p.T12M 0.23 tolerated(0.23) benign(0.014) TCGA-BR-8360-01 6 145114977 145114977 T C UTRN Silent p.F2976F 0.23 TCGA-BR-8360-01 6 146256278 146256278 C T SHPRH Missense_Mutation p.E919K 0.23 tolerated(0.06) possibly_damaging(0.902) TCGA-BR-8360-01 6 146266724 146266724 T - SHPRH Frame_Shift_Del p.G458Efs*26 0.21 TCGA-BR-8360-01 6 149285691 149285691 C T UST Missense_Mutation p.R225C 0.22 deleterious(0) benign(0.44) TCGA-BR-8360-01 6 151674332 151674332 G A AKAP12 Silent p.Q1602Q 0.30 TCGA-BR-8360-01 6 151857472 151857472 C T CCDC170 Missense_Mutation p.S26L 0.35 tolerated(1) benign(0.001) TCGA-BR-8360-01 6 154542444 154542444 A G IPCEF1 Silent p.H113H 0.26 TCGA-BR-8360-01 6 159206516 159206516 T C EZR Missense_Mutation p.T98A 0.40 deleterious(0) probably_damaging(0.989) TCGA-BR-8360-01 6 159655397 159655397 G A FNDC1 Missense_Mutation p.A1285T 0.16 tolerated_low_confidence(0.08) unknown(0) TCGA-BR-8360-01 6 160679635 160679635 C T SLC22A2 Missense_Mutation p.R52Q 0.31 tolerated(0.15) benign(0.002) TCGA-BR-8360-01 6 168352841 168352841 C T MLLT4 Missense_Mutation p.R1596C 0.32 deleterious_low_confidence(0) unknown(0) TCGA-BR-8360-01 6 169622298 169622298 C T THBS2 Silent p.P1089P 0.35 TCGA-BR-8360-01 6 170876072 170876072 A - TBP Frame_Shift_Del p.M219Wfs*46 0.14 TCGA-BR-8360-01 6 18222307 18222307 A - KDM1B 3'UTR 0.31 TCGA-BR-8360-01 6 24520684 24520684 G A ALDH5A1 Missense_Mutation p.G322D 0.51 deleterious(0) probably_damaging(1) TCGA-BR-8360-01 6 26017792 26017792 G A HIST1H1A Missense_Mutation p.R57C 0.07 deleterious(0) probably_damaging(0.998) TCGA-BR-8360-01 6 26124911 26124911 C - HIST1H2AC Intron 0.27 TCGA-BR-8360-01 6 26384043 26384043 G T BTN2A2 5'UTR 0.35 TCGA-BR-8360-01 6 28228207 28228207 G A NKAPL Missense_Mutation p.R353Q 0.25 deleterious(0) probably_damaging(0.999) TCGA-BR-8360-01 6 28269950 28269950 T C PGBD1 Silent p.N773N 0.27 TCGA-BR-8360-01 6 28554433 28554434 - C SCAND3 Frame_Shift_Ins p.E21Gfs*8 0.24 TCGA-BR-8360-01 6 29012665 29012665 A C OR2W1 Silent p.G96G 0.24 TCGA-BR-8360-01 6 29055051 29055051 A - OR2B3 5'UTR 0.29 TCGA-BR-8360-01 6 29556131 29556131 G A OR2H2 Missense_Mutation p.R137H 0.32 tolerated(0.15) benign(0.026) TCGA-BR-8360-01 6 29692855 29692855 G A HLA-F Missense_Mutation p.A220T 0.17 deleterious_low_confidence(0.03) probably_damaging(0.951) TCGA-BR-8360-01 6 30121852 30121852 G A TRIM10 Missense_Mutation p.A447V 0.28 deleterious(0) probably_damaging(0.924) TCGA-BR-8360-01 6 30227710 30227710 C T HCG17 Intron 0.22 TCGA-BR-8360-01 6 30550906 30550906 G A ABCF1 Missense_Mutation p.V286M 0.30 tolerated(0.06) possibly_damaging(0.727) TCGA-BR-8360-01 6 30552049 30552049 C T ABCF1 Missense_Mutation p.R395W 0.36 deleterious(0) probably_damaging(0.97) TCGA-BR-8360-01 6 31127272 31127272 G A TCF19 Missense_Mutation p.R9H 0.33 deleterious(0) possibly_damaging(0.84) TCGA-BR-8360-01 6 31599904 31599904 C T PRRC2A Missense_Mutation p.R1152C 0.28 unknown(0) TCGA-BR-8360-01 6 31600251 31600251 C T PRRC2A Silent p.A1267A 0.34 TCGA-BR-8360-01 6 31600727 31600727 G C PRRC2A Missense_Mutation p.G1426A 0.23 unknown(0) TCGA-BR-8360-01 6 31602658 31602658 A G PRRC2A Silent p.G1688G 0.19 TCGA-BR-8360-01 6 31655422 31655422 C T ABHD16A Missense_Mutation p.V515M 0.32 deleterious(0) possibly_damaging(0.791) TCGA-BR-8360-01 6 32023769 32023769 G A TNXB Missense_Mutation p.R2776W 0.22 possibly_damaging(0.809) TCGA-BR-8360-01 6 32118218 32118218 C - PRRT1 Frame_Shift_Del p.G162Afs*3 0.33 TCGA-BR-8360-01 6 33246260 33246260 C T B3GALT4 Missense_Mutation p.A355V 0.30 tolerated(0.36) benign(0.003) TCGA-BR-8360-01 6 33264042 33264042 C G RGL2 Missense_Mutation p.E177D 0.18 tolerated(0.12) probably_damaging(0.98) TCGA-BR-8360-01 6 33371779 33371779 G A KIFC1 Missense_Mutation p.R210H 0.28 tolerated(0.13) benign(0.002) TCGA-BR-8360-01 6 33653429 33653429 C T ITPR3 Missense_Mutation p.A1831V 0.34 tolerated(0.2) benign(0.007) TCGA-BR-8360-01 6 35912064 35912065 - T SLC26A8 Frame_Shift_Ins p.N842Kfs*44 0.26 TCGA-BR-8360-01 6 35967813 35967813 G A SLC26A8 Missense_Mutation p.S134L 0.26 deleterious(0.02) probably_damaging(1) TCGA-BR-8360-01 6 38759438 38759438 G A DNAH8 Silent p.L746L 0.26 TCGA-BR-8360-01 6 39869799 39869799 C T DAAM2 Missense_Mutation p.R1065W 0.18 deleterious_low_confidence(0) possibly_damaging(0.777) TCGA-BR-8360-01 6 41555186 41555186 C - FOXP4 Frame_Shift_Del p.L272Sfs*95 0.28 TCGA-BR-8360-01 6 41652368 41652368 C A TFEB Missense_Mutation p.S467I 0.10 deleterious(0) probably_damaging(0.985) TCGA-BR-8360-01 6 41877053 41877053 A G MED20 Missense_Mutation p.V126A 0.28 deleterious(0.04) benign(0.185) TCGA-BR-8360-01 6 42023690 42023690 G A TAF8 Missense_Mutation p.G101D 0.28 deleterious(0) probably_damaging(0.996) TCGA-BR-8360-01 6 43412000 43412000 C T ABCC10 Silent p.G866G 0.15 TCGA-BR-8360-01 6 43589437 43589437 G A GTPBP2 Missense_Mutation p.R575W 0.36 deleterious(0) probably_damaging(1) TCGA-BR-8360-01 6 44922295 44922295 C A SUPT3H Missense_Mutation p.E221D 0.31 tolerated(0.52) benign(0.035) TCGA-BR-8360-01 6 56374631 56374631 C T DST Missense_Mutation p.R3651H 0.14 probably_damaging(1) TCGA-BR-8360-01 6 56470972 56470972 A G DST Intron 0.19 TCGA-BR-8360-01 6 69772890 69772890 G A BAI3 Missense_Mutation p.D800N 0.19 tolerated(0.21) benign(0.438) TCGA-BR-8360-01 6 79944244 79944244 T - HMGN3 Intron 0.28 TCGA-BR-8360-01 6 80720630 80720630 A - TTK Frame_Shift_Del p.K192Sfs*18 0.23 TCGA-BR-8360-01 6 82909923 82909923 C T IBTK Missense_Mutation p.R987H 0.28 deleterious(0) probably_damaging(0.999) TCGA-BR-8360-01 6 87725581 87725581 C T HTR1E Missense_Mutation p.H177Y 0.40 tolerated(0.08) probably_damaging(1) TCGA-BR-8360-01 6 88318943 88318943 A G ORC3 Missense_Mutation p.S237G 0.34 deleterious(0.03) benign(0.197) TCGA-BR-8360-01 6 90661243 90661243 G A BACH2 Silent p.A194A 0.29 TCGA-BR-8360-01 6 93956681 93956681 C T EPHA7 Missense_Mutation p.G852D 0.27 tolerated(0.41) probably_damaging(1) TCGA-BR-8360-01 7 100279976 100279976 C T GIGYF1 Silent p.L910L 0.39 TCGA-BR-8360-01 7 100552645 100552645 T C MUC3A Missense_Mutation p.S466P 0.14 deleterious(0.04) benign(0.44) TCGA-BR-8360-01 7 101183269 101183269 C - COL26A1 Frame_Shift_Del p.D183Tfs*166 0.16 TCGA-BR-8360-01 7 102574941 102574941 G C LRRC17 Missense_Mutation p.S194T 0.21 tolerated(0.45) benign(0.002) TCGA-BR-8360-01 7 103018957 103018957 G A SLC26A5 Missense_Mutation p.A574V 0.21 tolerated(0.25) benign(0.023) TCGA-BR-8360-01 7 1037311 1037311 G - C7orf50 Frame_Shift_Del p.L179Cfs*136 0.36 TCGA-BR-8360-01 7 104766779 104766779 C T SRPK2 Missense_Mutation p.A611T 0.18 deleterious(0) probably_damaging(0.991) TCGA-BR-8360-01 7 116937798 116937798 C - WNT2 Frame_Shift_Del p.A241Pfs*6 0.27 TCGA-BR-8360-01 7 122342670 122342670 T A RNF148 Silent p.T45T 0.34 TCGA-BR-8360-01 7 126079102 126079102 A T GRM8 3'UTR 0.35 TCGA-BR-8360-01 7 127729669 127729669 C T SND1 Silent p.G849G 0.25 TCGA-BR-8360-01 7 127973348 127973349 - A RBM28 Frame_Shift_Ins p.I339Yfs*7 0.27 TCGA-BR-8360-01 7 128495311 128495311 G T FLNC Silent p.V2398V 0.38 TCGA-BR-8360-01 7 128497221 128497221 C A FLNC Silent p.A2537A 0.39 TCGA-BR-8360-01 7 131865401 131865401 A T PLXNA4 Missense_Mutation p.S1195T 0.21 deleterious(0.02) probably_damaging(0.998) TCGA-BR-8360-01 7 134215432 134215432 C T AKR1B10 Missense_Mutation p.A35V 0.34 deleterious(0.02) benign(0.257) TCGA-BR-8360-01 7 134849852 134849852 C T TMEM140 3'UTR 0.27 TCGA-BR-8360-01 7 13949284 13949284 T G ETV1 Missense_Mutation p.T305P 0.25 deleterious(0.01) probably_damaging(0.974) TCGA-BR-8360-01 7 144098496 144098496 G - NOBOX Frame_Shift_Del p.R163Afs*11 0.23 TCGA-BR-8360-01 7 147675067 147675067 G A CNTNAP2 Missense_Mutation p.R790H 0.42 tolerated(0.12) benign(0.032) TCGA-BR-8360-01 7 149485459 149485459 C - SSPO RNA 0.14 TCGA-BR-8360-01 7 149516534 149516534 C T SSPO RNA 0.33 TCGA-BR-8360-01 7 149558011 149558011 G A ZNF862 Missense_Mutation p.V588M 0.39 tolerated(0.17) benign(0.001) TCGA-BR-8360-01 7 150873302 150873302 C T ASB10 Missense_Mutation p.R434H 0.26 deleterious(0) probably_damaging(0.991) TCGA-BR-8360-01 7 151917681 151917681 G A KMT2C Silent p.S1213S 0.28 TCGA-BR-8360-01 7 154863212 154863212 C T HTR5A Silent p.A201A 0.14 TCGA-BR-8360-01 7 155093316 155093316 C T INSIG1 Silent p.L151L 0.34 TCGA-BR-8360-01 7 15651944 15651944 C T MEOX2 3'UTR 0.26 TCGA-BR-8360-01 7 2255800 2255800 C T MAD1L1 Silent p.A267A 0.41 TCGA-BR-8360-01 7 27203381 27203381 T A HOXA9 Missense_Mutation p.E220D 0.22 deleterious(0) probably_damaging(0.983) TCGA-BR-8360-01 7 31683217 31683217 G A CCDC129 Missense_Mutation p.A771T 0.22 tolerated(1) benign(0.001) TCGA-BR-8360-01 7 36895082 36895082 G T ELMO1 3'UTR 0.31 TCGA-BR-8360-01 7 40277271 40277271 T C SUGCT Silent p.G181G 0.17 TCGA-BR-8360-01 7 43664561 43664561 A G STK17A 3'UTR 0.21 TCGA-BR-8360-01 7 48431646 48431646 A G ABCA13 Missense_Mutation p.D3928G 0.25 probably_damaging(0.986) TCGA-BR-8360-01 7 5352370 5352370 C A TNRC18 Missense_Mutation p.G2718C 0.27 unknown(0) TCGA-BR-8360-01 7 5540810 5540810 G A FBXL18 Missense_Mutation p.R364C 0.38 deleterious(0) possibly_damaging(0.896) TCGA-BR-8360-01 7 57188817 57188817 C T ZNF479 Missense_Mutation p.G102D 0.29 tolerated(0.27) probably_damaging(0.961) TCGA-BR-8360-01 7 64167492 64167492 A G ZNF107 Silent p.K270K 0.32 TCGA-BR-8360-01 7 6464452 6464452 C T DAGLB Silent p.P357P 0.41 TCGA-BR-8360-01 7 6791127 6791127 A - RSPH10B2 5'Flank 0.28 TCGA-BR-8360-01 7 75183785 75183785 G A HIP1 Silent p.I668I 0.14 TCGA-BR-8360-01 7 8043675 8043675 G T GLCCI1 Missense_Mutation p.D199Y 0.33 deleterious(0) probably_damaging(0.998) TCGA-BR-8360-01 7 87912360 87912360 G - STEAP4 Frame_Shift_Del p.L194Cfs*27 0.21 TCGA-BR-8360-01 7 89984426 89984426 A T GTPBP10 Missense_Mutation p.I116F 0.29 tolerated(0.23) benign(0.03) TCGA-BR-8360-01 7 91503062 91503062 G T MTERF Missense_Mutation p.P349H 0.24 deleterious(0) probably_damaging(0.999) TCGA-BR-8360-01 7 91752448 91752450 AAG - CYP51A1 In_Frame_Del p.P357del 0.35 TCGA-BR-8360-01 7 97946561 97946561 G A BAIAP2L1 Silent p.N152N 0.28 TCGA-BR-8360-01 8 100287380 100287380 A G VPS13B Missense_Mutation p.K908E 0.20 tolerated(0.08) benign(0.206) TCGA-BR-8360-01 8 101271170 101271170 G T RNF19A Missense_Mutation p.P711T 0.21 tolerated_low_confidence(0.06) probably_damaging(0.998) TCGA-BR-8360-01 8 103289349 103289349 T - UBR5 Frame_Shift_Del p.E2121Kfs*28 0.18 TCGA-BR-8360-01 8 104432506 104432506 G T DCAF13 Missense_Mutation p.D181Y 0.18 deleterious(0) probably_damaging(0.993) TCGA-BR-8360-01 8 105105702 105105702 C T RIMS2 Intron 0.22 TCGA-BR-8360-01 8 105509814 105509814 C A LRP12 Missense_Mutation p.E322D 0.20 tolerated(0.47) benign(0.083) TCGA-BR-8360-01 8 11188791 11188791 G A SLC35G5 Missense_Mutation p.R59H 0.23 deleterious(0) benign(0.031) TCGA-BR-8360-01 8 11282136 11282136 G A FAM167A Missense_Mutation p.R131W 0.32 deleterious(0) probably_damaging(0.998) TCGA-BR-8360-01 8 113236946 113236946 G A CSMD3 3'UTR 0.17 TCGA-BR-8360-01 8 118170071 118170071 C T SLC30A8 Missense_Mutation p.A187V 0.19 tolerated(1) benign(0.004) TCGA-BR-8360-01 8 118540959 118540959 C T MED30 Missense_Mutation p.R83C 0.23 deleterious(0) probably_damaging(0.938) TCGA-BR-8360-01 8 118811867 118811867 C T EXT1 3'UTR 0.19 TCGA-BR-8360-01 8 121463538 121463538 G A MTBP Missense_Mutation p.S134N 0.29 deleterious(0.01) possibly_damaging(0.859) TCGA-BR-8360-01 8 124361578 124361578 G A ATAD2 Nonsense_Mutation p.R585* 0.21 TCGA-BR-8360-01 8 125499067 125499067 C T RNF139 Silent p.L393L 0.23 TCGA-BR-8360-01 8 125989004 125989004 G A ZNF572 Missense_Mutation p.C165Y 0.29 deleterious(0) probably_damaging(1) TCGA-BR-8360-01 8 12956978 12956978 G A DLC1 Silent p.N956N 0.27 TCGA-BR-8360-01 8 131848643 131848643 C A ADCY8 Missense_Mutation p.R852L 0.12 deleterious(0) possibly_damaging(0.873) TCGA-BR-8360-01 8 143995763 143995763 C T CYP11B2 Missense_Mutation p.A291T 0.21 tolerated(0.09) benign(0.26) TCGA-BR-8360-01 8 144103156 144103156 G A LY6E Missense_Mutation p.A116T 0.20 tolerated(0.13) benign(0.01) TCGA-BR-8360-01 8 144126111 144126111 G A C8orf31 Missense_Mutation p.A78T 0.37 tolerated_low_confidence(0.28) unknown(0) TCGA-BR-8360-01 8 144810317 144810317 G A FAM83H Silent p.G438G 0.29 TCGA-BR-8360-01 8 144919465 144919465 C T NRBP2 Silent p.S361S 0.29 TCGA-BR-8360-01 8 144993912 144993912 G A PLEC Silent p.G3496G 0.30 TCGA-BR-8360-01 8 144996889 144996889 G A PLEC Missense_Mutation p.A2540V 0.26 probably_damaging(0.995) TCGA-BR-8360-01 8 145002109 145002109 C T PLEC Silent p.V1241V 0.36 TCGA-BR-8360-01 8 145113410 145113410 C A OPLAH Missense_Mutation p.G258C 0.18 deleterious(0) possibly_damaging(0.656) TCGA-BR-8360-01 8 145113453 145113453 G A OPLAH Silent p.P243P 0.16 TCGA-BR-8360-01 8 145649444 145649444 G A VPS28 Silent p.G176G 0.24 TCGA-BR-8360-01 8 145747941 145747941 G A LRRC24 Missense_Mutation p.A487V 0.33 tolerated_low_confidence(0.14) benign(0.022) TCGA-BR-8360-01 8 146157244 146157244 T - ZNF16 Frame_Shift_Del p.K310Sfs*7 0.14 TCGA-BR-8360-01 8 15397913 15397913 G A TUSC3 5'UTR 0.62 TCGA-BR-8360-01 8 1728804 1728804 G A CLN8 3'UTR 0.25 TCGA-BR-8360-01 8 23712168 23712168 T - STC1 5'UTR 0.29 TCGA-BR-8360-01 8 28385158 28385159 - T FZD3 Frame_Shift_Ins p.T297Yfs*25 0.21 TCGA-BR-8360-01 8 28827712 28827712 A G HMBOX1 Missense_Mutation p.D59G 0.33 tolerated_low_confidence(0.07) benign(0.248) TCGA-BR-8360-01 8 3611465 3611465 G A CSMD1 Silent p.N306N 0.33 TCGA-BR-8360-01 8 37607921 37607921 A G ERLIN2 Missense_Mutation p.E189G 0.11 deleterious(0) probably_damaging(0.995) TCGA-BR-8360-01 8 37691605 37691605 G - GPR124 Frame_Shift_Del p.A525Pfs*12 0.29 TCGA-BR-8360-01 8 39022629 39022629 T C ADAM32 Silent p.G249G 0.22 TCGA-BR-8360-01 8 41530179 41530179 C A ANK1 Missense_Mutation p.G1638C 0.31 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-BR-8360-01 8 42231818 42231818 G A DKK4 Missense_Mutation p.R159C 0.40 deleterious(0) probably_damaging(0.991) TCGA-BR-8360-01 8 48353071 48353071 G A SPIDR Missense_Mutation p.R355H 0.16 tolerated(0.92) benign(0.004) TCGA-BR-8360-01 8 48743276 48743276 T - PRKDC Frame_Shift_Del p.M2762* 0.30 TCGA-BR-8360-01 8 52258393 52258393 C G PXDNL Missense_Mutation p.R1339T 0.20 tolerated(0.64) benign(0) TCGA-BR-8360-01 8 73942591 73942591 C T TERF1 Missense_Mutation p.A303V 0.26 tolerated(0.43) benign(0.008) TCGA-BR-8360-01 8 77895466 77895466 T - PEX2 3'UTR 0.25 TCGA-BR-8360-01 8 81399898 81399898 G A ZBTB10 Missense_Mutation p.V285M 0.26 deleterious_low_confidence(0.04) benign(0.169) TCGA-BR-8360-01 8 8749608 8749608 G A MFHAS1 Missense_Mutation p.L321F 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8360-01 8 93074929 93074929 C T RUNX1T1 Intron 0.23 TCGA-BR-8360-01 8 97156923 97156923 G A GDF6 Silent p.P412P 0.18 TCGA-BR-8360-01 8 98787876 98787876 C G LAPTM4B 5'UTR 0.33 TCGA-BR-8360-01 8 98943442 98943442 T G MATN2 Missense_Mutation p.M135R 0.39 deleterious(0) possibly_damaging(0.737) TCGA-BR-8360-01 9 100823160 100823161 - G NANS Frame_Shift_Ins p.K79Efs*15 0.22 TCGA-BR-8360-01 9 100857274 100857274 A G TRIM14 Missense_Mutation p.M192T 0.22 tolerated(0.48) benign(0.004) TCGA-BR-8360-01 9 101829281 101829281 C A COL15A1 Missense_Mutation p.H1257N 0.21 deleterious(0) probably_damaging(0.984) TCGA-BR-8360-01 9 103090122 103090122 C T TEX10 Missense_Mutation p.R583Q 0.11 tolerated(0.14) benign(0.087) TCGA-BR-8360-01 9 104335629 104335629 G A GRIN3A Missense_Mutation p.R1059W 0.20 tolerated(0.14) benign(0.013) TCGA-BR-8360-01 9 104499831 104499831 T C GRIN3A Missense_Mutation p.Y144C 0.14 deleterious(0) probably_damaging(0.959) TCGA-BR-8360-01 9 107360934 107360934 G A OR13C5 Missense_Mutation p.T254I 0.16 deleterious(0.02) probably_damaging(0.999) TCGA-BR-8360-01 9 109689449 109689449 G T ZNF462 Missense_Mutation p.G1086C 0.19 probably_damaging(0.936) TCGA-BR-8360-01 9 113242031 113242031 G T SVEP1 Missense_Mutation p.R791S 0.14 probably_damaging(0.999) TCGA-BR-8360-01 9 115642093 115642093 C A SLC46A2 Silent p.V459V 0.18 TCGA-BR-8360-01 9 117360115 117360115 G A ATP6V1G1 3'UTR 0.16 TCGA-BR-8360-01 9 117849317 117849317 G A TNC Silent p.C231C 0.24 TCGA-BR-8360-01 9 121971175 121971175 G T BRINP1 Missense_Mutation p.L323M 0.24 deleterious(0) probably_damaging(0.969) TCGA-BR-8360-01 9 123620208 123620208 C - PHF19 3'UTR 0.15 TCGA-BR-8360-01 9 123860802 123860802 C T CNTRL Missense_Mutation p.P254S 0.23 possibly_damaging(0.742) TCGA-BR-8360-01 9 124089067 124089067 C T GSN Intron 0.24 TCGA-BR-8360-01 9 124522230 124522232 AAG - DAB2IP In_Frame_Del p.K202del 0.34 TCGA-BR-8360-01 9 125836582 125836582 T C RABGAP1 Missense_Mutation p.Y710H 0.17 tolerated(0.32) possibly_damaging(0.773) TCGA-BR-8360-01 9 126202750 126202750 G A DENND1A Silent p.C459C 0.15 TCGA-BR-8360-01 9 12695537 12695537 A G TYRP1 Silent p.L136L 0.33 TCGA-BR-8360-01 9 127101923 127101923 C T NEK6 Silent p.S266S 0.21 TCGA-BR-8360-01 9 127982924 127982924 C T RABEPK Silent p.G157G 0.33 TCGA-BR-8360-01 9 130211589 130211589 G - RPL12 Frame_Shift_Del p.P88Hfs*34 0.27 TCGA-BR-8360-01 9 130453148 130453148 G A STXBP1 3'UTR 0.28 TCGA-BR-8360-01 9 130507272 130507273 - G SH2D3C Frame_Shift_Ins p.T459Dfs*31 0.17 TCGA-BR-8360-01 9 131028142 131028142 C A GOLGA2 Missense_Mutation p.G224W 0.26 deleterious(0) probably_damaging(1) TCGA-BR-8360-01 9 131395598 131395598 G A SPTAN1 Silent p.S2473S 0.26 TCGA-BR-8360-01 9 131476529 131476529 C T PKN3 Missense_Mutation p.R456C 0.20 deleterious(0) probably_damaging(0.998) TCGA-BR-8360-01 9 131825895 131825895 G A FAM73B Missense_Mutation p.M385I 0.25 tolerated(0.9) benign(0.085) TCGA-BR-8360-01 9 134501510 134501510 G A RAPGEF1 Nonsense_Mutation p.Q502* 0.14 TCGA-BR-8360-01 9 135277575 135277575 C T TTF1 Missense_Mutation p.A212T 0.22 tolerated(0.57) benign(0.157) TCGA-BR-8360-01 9 135771499 135771499 C T TSC1 3'UTR 0.21 TCGA-BR-8360-01 9 136340541 136340541 T G SLC2A6 Missense_Mutation p.Q252P 0.24 tolerated(0.08) possibly_damaging(0.723) TCGA-BR-8360-01 9 137778363 137778363 C T FCN2 Missense_Mutation p.A216V 0.18 deleterious(0.02) benign(0.026) TCGA-BR-8360-01 9 139272627 139272627 G C SNAPC4 Missense_Mutation p.P1218A 0.19 tolerated(0.21) benign(0.283) TCGA-BR-8360-01 9 139272628 139272628 C T SNAPC4 Silent p.E1217E 0.19 TCGA-BR-8360-01 9 139370379 139370379 A - SEC16A Frame_Shift_Del p.F563Lfs*9 0.22 TCGA-BR-8360-01 9 139617657 139617657 G A FAM69B Missense_Mutation p.A243T 0.14 tolerated(0.29) benign(0.005) TCGA-BR-8360-01 9 139621117 139621117 G A FAM69B 3'Flank 0.38 TCGA-BR-8360-01 9 16435703 16435703 G T BNC2 Missense_Mutation p.P830Q 0.16 deleterious(0.02) possibly_damaging(0.601) TCGA-BR-8360-01 9 37441517 37441517 G A ZBTB5 Silent p.S344S 0.32 TCGA-BR-8360-01 9 4585671 4585671 T C SLC1A1 3'UTR 0.23 TCGA-BR-8360-01 9 5335330 5335330 T - RLN1 Frame_Shift_Del p.K160Rfs*14 0.26 TCGA-BR-8360-01 9 5457282 5457282 C T CD274 Missense_Mutation p.R86W 0.32 tolerated(0.33) benign(0.001) TCGA-BR-8360-01 9 72082835 72082835 G A APBA1 Silent p.A462A 0.17 TCGA-BR-8360-01 9 72967275 72967275 T - SMC5 3'UTR 0.23 TCGA-BR-8360-01 9 73152148 73152148 C T TRPM3 Missense_Mutation p.R1282H 0.22 tolerated(0.28) benign(0.1) TCGA-BR-8360-01 9 74526748 74526748 C T C9orf85 Missense_Mutation p.T33I 0.17 tolerated(0.13) benign(0.067) TCGA-BR-8360-01 9 74810422 74810422 T - GDA Frame_Shift_Del p.L45* 0.23 TCGA-BR-8360-01 9 79324975 79324975 G A PRUNE2 Missense_Mutation p.P739S 0.17 tolerated(0.13) benign(0.002) TCGA-BR-8360-01 9 79469039 79469039 T C PRUNE2 Missense_Mutation p.Y41C 0.29 deleterious(0) probably_damaging(0.999) TCGA-BR-8360-01 9 841907 841907 G A DMRT1 Silent p.P23P 0.21 TCGA-BR-8360-01 9 86452031 86452031 C T KIF27 Missense_Mutation p.R1364H 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8360-01 9 88923492 88923493 - T ZCCHC6 Frame_Shift_Ins p.N1230Kfs*21 0.18 TCGA-BR-8360-01 9 91656996 91656996 C A SHC3 Missense_Mutation p.W435C 0.21 tolerated(0.19) benign(0) TCGA-BR-8360-01 9 91964783 91964783 G A SECISBP2 Missense_Mutation p.A611T 0.20 tolerated(0.28) benign(0.014) TCGA-BR-8360-01 9 95738953 95738953 A G FGD3 Missense_Mutation p.T139A 0.16 tolerated(0.49) benign(0.001) TCGA-BR-8360-01 9 97063569 97063569 C T ZNF169 Missense_Mutation p.R577C 0.28 deleterious(0) probably_damaging(0.996) TCGA-BR-8360-01 9 98209385 98209385 G A PTCH1 Missense_Mutation p.P1385S 0.16 tolerated_low_confidence(1) benign(0.001) TCGA-BR-8360-01 X 101623733 101623733 T G NXF2B Missense_Mutation p.K210T 0.13 tolerated(0.33) benign(0.005) TCGA-BR-8360-01 X 101909850 101909850 C T GPRASP1 Nonsense_Mutation p.R337* 0.25 TCGA-BR-8360-01 X 109695155 109695155 T C RGAG1 Missense_Mutation p.M437T 0.64 tolerated(0.05) benign(0.015) TCGA-BR-8360-01 X 123196991 123196991 C G STAG2 Missense_Mutation p.T586S 0.48 tolerated(0.08) benign(0.096) TCGA-BR-8360-01 X 123680890 123680890 A T TENM1 Missense_Mutation p.Y829N 0.17 tolerated(0.19) benign(0.039) TCGA-BR-8360-01 X 128873107 128873107 G T XPNPEP2 5'UTR 0.08 TCGA-BR-8360-01 X 128922006 128922006 C - SASH3 Frame_Shift_Del p.V40Wfs*2 0.55 TCGA-BR-8360-01 X 129201300 129201300 A G ELF4 Missense_Mutation p.F463S 0.53 tolerated(0.17) probably_damaging(0.996) TCGA-BR-8360-01 X 144903937 144903937 C T SLITRK2 5'UTR 0.33 TCGA-BR-8360-01 X 152610301 152610301 G A ZNF275 Intron 0.50 TCGA-BR-8360-01 X 153762671 153762671 C T G6PD Missense_Mutation p.D206N 0.48 deleterious(0) probably_damaging(0.964) TCGA-BR-8360-01 X 16721051 16721051 C T CTPS2 5'UTR 0.79 TCGA-BR-8360-01 X 228142 228142 G A GTPBP6 Silent p.L128L 0.35 TCGA-BR-8360-01 X 229543 229543 G A GTPBP6 Missense_Mutation p.A40V 0.42 tolerated(0.47) benign(0.039) TCGA-BR-8360-01 X 23740851 23740851 G A ACOT9 Silent p.H140H 0.58 TCGA-BR-8360-01 X 47001792 47001792 C T NDUFB11 Missense_Mutation p.R139Q 0.57 deleterious(0) probably_damaging(1) TCGA-BR-8360-01 X 47426121 47426126 CCACTC - ARAF In_Frame_Del p.T215_P216del 0.68 TCGA-BR-8360-01 X 48544502 48544502 C T WAS Missense_Mutation p.H180Y 0.59 tolerated_low_confidence(0.09) benign(0.358) TCGA-BR-8360-01 X 53222309 53222309 G - KDM5C Frame_Shift_Del p.P1508Lfs*36 0.33 TCGA-BR-8360-01 X 53458328 53458328 G A HSD17B10 3'UTR 0.37 TCGA-BR-8360-01 X 55040074 55040074 T G ALAS2 Missense_Mutation p.N482T 0.12 deleterious(0) benign(0.056) TCGA-BR-8360-01 X 595436 595436 C A SHOX Missense_Mutation p.R121S 0.19 deleterious(0) probably_damaging(0.909) TCGA-BR-8360-01 X 65259784 65259784 A G VSIG4 Splice_Site p.X19_splice 0.59 TCGA-BR-8360-01 X 67273626 67273626 G A OPHN1 Missense_Mutation p.R729W 0.44 deleterious_low_confidence(0.03) benign(0.014) TCGA-BR-8360-01 X 69255483 69255483 C T EDA 3'UTR 0.53 TCGA-BR-8360-01 X 70147375 70147375 C T SLC7A3 Missense_Mutation p.R381H 0.62 tolerated(0.32) benign(0.001) TCGA-BR-8360-01 X 70327613 70327614 - G IL2RG Frame_Shift_Ins p.C362Mfs*7 0.58 TCGA-BR-8360-01 X 71801013 71801013 C T PHKA1 Missense_Mutation p.A1171T 0.19 deleterious(0.01) benign(0.122) TCGA-BR-8360-01 X 75004754 75004754 G - MAGEE2 Frame_Shift_Del p.Q45Sfs*27 0.37 TCGA-BR-8360-01 Y 15522892 15522892 T C UTY Missense_Mutation p.D179G 0.59 deleterious(0.02) benign(0.013) TCGA-BR-8361-01 10 100174897 100174897 G A PYROXD2 5'UTR 0.38 TCGA-BR-8361-01 10 101122095 101122095 C G CNNM1 Missense_Mutation p.P657R 0.38 deleterious(0.01) benign(0.329) TCGA-BR-8361-01 10 101823471 101823471 G A CPN1 Silent p.V257V 0.20 TCGA-BR-8361-01 10 101953779 101953779 T - CHUK Frame_Shift_Del p.R646Gfs*22 0.26 TCGA-BR-8361-01 10 103901063 103901063 G A PPRC1 Missense_Mutation p.G933D 0.42 deleterious_low_confidence(0.01) possibly_damaging(0.606) TCGA-BR-8361-01 10 104140951 104140951 C T GBF1 Silent p.G1746G 0.23 TCGA-BR-8361-01 10 104389902 104389902 C T SUFU Missense_Mutation p.P482L 0.34 tolerated_low_confidence(0.2) benign(0.15) TCGA-BR-8361-01 10 104678873 104678874 - G CNNM2 Frame_Shift_Ins p.K215Qfs*196 0.31 TCGA-BR-8361-01 10 105172904 105172904 G A PDCD11 Missense_Mutation p.R337Q 0.18 tolerated(0.41) benign(0.006) TCGA-BR-8361-01 10 105758876 105758876 G T SLK Splice_Site p.X196_splice 0.22 TCGA-BR-8361-01 10 105765439 105765439 C T SLK Missense_Mutation p.R824W 0.27 deleterious(0) probably_damaging(0.999) TCGA-BR-8361-01 10 105801069 105801069 C T COL17A1 Missense_Mutation p.G880D 0.21 possibly_damaging(0.841) TCGA-BR-8361-01 10 106074327 106074327 G A ITPRIP Missense_Mutation p.L495F 0.28 tolerated(0.11) benign(0.005) TCGA-BR-8361-01 10 11330379 11330379 A G CELF2 Splice_Site p.X281_splice 0.27 TCGA-BR-8361-01 10 115481532 115481532 A T CASP7 Nonsense_Mutation p.K157* 0.24 TCGA-BR-8361-01 10 115489357 115489357 T - CASP7 3'UTR 0.20 TCGA-BR-8361-01 10 115804937 115804937 T A ADRB1 Missense_Mutation p.F349Y 0.35 deleterious(0) probably_damaging(0.945) TCGA-BR-8361-01 10 116045994 116045994 C T VWA2 Missense_Mutation p.R432C 0.17 deleterious(0.02) possibly_damaging(0.663) TCGA-BR-8361-01 10 121595140 121595140 G A MCMBP Missense_Mutation p.A542V 0.38 tolerated(0.2) benign(0.029) TCGA-BR-8361-01 10 124457678 124457678 T C C10orf120 Silent p.S193S 0.20 TCGA-BR-8361-01 10 124797336 124797336 A C ACADSB Silent p.S92S 0.23 TCGA-BR-8361-01 10 125780730 125780730 C T CHST15 Intron 0.54 TCGA-BR-8361-01 10 127412385 127412385 A - EDRF1 Frame_Shift_Del p.K132Nfs*3 0.40 TCGA-BR-8361-01 10 127483544 127483544 C - UROS Frame_Shift_Del p.V189Ffs*51 0.25 TCGA-BR-8361-01 10 127548546 127548546 T C DHX32 Splice_Site p.X159_splice 0.38 TCGA-BR-8361-01 10 129536879 129536879 G A FOXI2 Missense_Mutation p.A203T 0.33 tolerated(0.48) possibly_damaging(0.821) TCGA-BR-8361-01 10 131761751 131761751 C T EBF3 Silent p.Q57Q 0.27 TCGA-BR-8361-01 10 131977821 131977821 T - GLRX3 Intron 0.24 TCGA-BR-8361-01 10 13371727 13371727 C T SEPHS1 Missense_Mutation p.A208T 0.38 deleterious(0.02) possibly_damaging(0.557) TCGA-BR-8361-01 10 134598879 134598879 C T NKX6-2 Missense_Mutation p.A162T 0.39 deleterious(0.02) probably_damaging(0.932) TCGA-BR-8361-01 10 135440178 135440179 - G FRG2B Frame_Shift_Ins p.Q25Pfs*12 0.08 TCGA-BR-8361-01 10 16635393 16635393 T G RSU1 Nonstop_Mutation p.*278Yext*56 0.27 TCGA-BR-8361-01 10 22618055 22618055 A T BMI1 Missense_Mutation p.R217W 0.31 deleterious(0) probably_damaging(0.995) TCGA-BR-8361-01 10 23287215 23287215 C T ARMC3 Silent p.H438H 0.18 TCGA-BR-8361-01 10 23409824 23409824 C A MSRB2 3'UTR 0.32 TCGA-BR-8361-01 10 24833341 24833341 C T KIAA1217 Silent p.P1714P 0.31 TCGA-BR-8361-01 10 28023549 28023549 C T MKX Missense_Mutation p.R225H 0.34 deleterious(0) probably_damaging(0.998) TCGA-BR-8361-01 10 29783879 29783879 T C SVIL Missense_Mutation p.R1269G 0.24 deleterious(0) possibly_damaging(0.517) TCGA-BR-8361-01 10 30315568 30315568 G T KIAA1462 Missense_Mutation p.P1170H 0.29 deleterious(0) probably_damaging(0.986) TCGA-BR-8361-01 10 31816061 31816061 A G ZEB1 Missense_Mutation p.N1083D 0.20 tolerated_low_confidence(0.53) benign(0) TCGA-BR-8361-01 10 32833205 32833205 A - CCDC7 Frame_Shift_Del p.E372Kfs*9 0.21 TCGA-BR-8361-01 10 38407491 38407491 A T ZNF37A Missense_Mutation p.E471V 0.45 deleterious(0.03) probably_damaging(0.987) TCGA-BR-8361-01 10 387169 387169 C T DIP2C Missense_Mutation p.G1185E 0.23 tolerated(0.08) probably_damaging(1) TCGA-BR-8361-01 10 43318712 43318712 C T BMS1 Silent p.S1093S 0.24 TCGA-BR-8361-01 10 45941110 45941110 G A ALOX5 Missense_Mutation p.R667Q 0.26 tolerated(0.19) benign(0.01) TCGA-BR-8361-01 10 46967496 46967496 C T SYT15 Missense_Mutation p.R194Q 0.14 deleterious(0.02) possibly_damaging(0.627) TCGA-BR-8361-01 10 50122031 50122031 A C LRRC18 Missense_Mutation p.L57R 0.29 deleterious(0) probably_damaging(0.995) TCGA-BR-8361-01 10 51464874 51464874 G A AGAP7 Missense_Mutation p.R528W 0.17 deleterious(0.02) benign(0.043) TCGA-BR-8361-01 10 53459246 53459247 - C CSTF2T Frame_Shift_Ins p.N22Efs*5 0.24 TCGA-BR-8361-01 10 55591248 55591248 C T PCDH15 Silent p.P1343P 0.22 TCGA-BR-8361-01 10 62648943 62648943 C T RHOBTB1 Silent p.R161R 0.29 TCGA-BR-8361-01 10 63700041 63700041 G A ARID5B Missense_Mutation p.A126T 0.32 tolerated(0.08) benign(0) TCGA-BR-8361-01 10 6552975 6552975 G A PRKCQ Silent p.N100N 0.28 TCGA-BR-8361-01 10 68940122 68940122 C T CTNNA3 Missense_Mutation p.A334T 0.22 tolerated(0.11) benign(0.229) TCGA-BR-8361-01 10 70723160 70723160 G A DDX21 Missense_Mutation p.A241T 0.28 tolerated(0.05) probably_damaging(0.934) TCGA-BR-8361-01 10 71144653 71144653 G T HK1 Missense_Mutation p.Q611H 0.37 tolerated(0.14) benign(0) TCGA-BR-8361-01 10 7214079 7214079 G A SFMBT2 Silent p.T731T 0.30 TCGA-BR-8361-01 10 73115921 73115921 G A SLC29A3 Missense_Mutation p.A232T 0.31 deleterious(0.01) possibly_damaging(0.904) TCGA-BR-8361-01 10 7326038 7326038 A G SFMBT2 Silent p.P200P 0.25 TCGA-BR-8361-01 10 74813270 74813270 T C P4HA1 Missense_Mutation p.Y181C 0.30 deleterious(0) probably_damaging(0.999) TCGA-BR-8361-01 10 75410664 75410664 A G SYNPO2L Intron 0.31 TCGA-BR-8361-01 10 76360209 76360209 G A ADK Missense_Mutation p.V279M 0.26 deleterious(0) probably_damaging(0.995) TCGA-BR-8361-01 10 7679376 7679376 A - ITIH5 Frame_Shift_Del p.F156Sfs*2 0.29 TCGA-BR-8361-01 10 78647136 78647136 C T KCNMA1 Missense_Mutation p.S1183N 0.08 tolerated(0.09) probably_damaging(0.995) TCGA-BR-8361-01 10 79750815 79750815 C T POLR3A Silent p.L966L 0.12 TCGA-BR-8361-01 10 8056703 8056703 C T TAF3 Nonsense_Mutation p.R927* 0.33 TCGA-BR-8361-01 10 81052026 81052026 A G ZMIZ1 Silent p.A290A 0.30 TCGA-BR-8361-01 10 85904668 85904668 A G GHITM Missense_Mutation p.T127A 0.28 deleterious(0) probably_damaging(0.996) TCGA-BR-8361-01 10 86133618 86133618 A G CCSER2 Intron 0.20 TCGA-BR-8361-01 10 88197332 88197332 A G WAPAL Missense_Mutation p.S1181P 0.32 deleterious(0.01) probably_damaging(0.916) TCGA-BR-8361-01 10 88703315 88703315 A C MMRN2 Missense_Mutation p.V409G 0.26 tolerated(0.41) benign(0.001) TCGA-BR-8361-01 10 88769294 88769294 C T RP11-96C23.10 3'Flank 0.40 TCGA-BR-8361-01 10 89117945 89117945 C T NUTM2D 5'UTR 0.08 TCGA-BR-8361-01 10 92656100 92656100 C T RPP30 Silent p.D216D 0.21 TCGA-BR-8361-01 10 92675945 92675945 T - ANKRD1 Frame_Shift_Del p.I212Lfs*16 0.22 TCGA-BR-8361-01 10 94828127 94828127 G A CYP26C1 Silent p.T414T 0.13 TCGA-BR-8361-01 10 95168550 95168550 A - MYOF Frame_Shift_Del p.F241Lfs*11 0.27 TCGA-BR-8361-01 10 99237113 99237113 G A MMS19 Missense_Mutation p.R162W 0.31 deleterious(0) probably_damaging(0.961) TCGA-BR-8361-01 10 99623729 99623729 G A GOLGA7B Missense_Mutation p.G61R 0.41 tolerated(0.31) benign(0.166) TCGA-BR-8361-01 11 1011014 1011014 C T AP2A2 3'UTR 0.43 TCGA-BR-8361-01 11 101342905 101342905 A G TRPC6 Missense_Mutation p.L723S 0.20 deleterious(0) probably_damaging(0.999) TCGA-BR-8361-01 11 1019473 1019473 C T MUC6 Missense_Mutation p.V1278I 0.28 unknown(0) TCGA-BR-8361-01 11 1023607 1023607 C T MUC6 Missense_Mutation p.G1143D 0.30 unknown(0) TCGA-BR-8361-01 11 1027294 1027295 - TGCT MUC6 Frame_Shift_Ins p.S736Afs*34 0.36 TCGA-BR-8361-01 11 103814312 103814312 T - PDGFD Frame_Shift_Del p.I214Lfs*68 0.14 TCGA-BR-8361-01 11 104912110 104912110 G T CARD16 3'UTR 0.20 TCGA-BR-8361-01 11 105769149 105769149 C T GRIA4 Missense_Mutation p.P294L 0.26 tolerated(0.95) benign(0.023) TCGA-BR-8361-01 11 105850546 105850546 C T GRIA4 3'UTR 0.33 TCGA-BR-8361-01 11 105880801 105880801 C T MSANTD4 Missense_Mutation p.V167I 0.23 tolerated(0.38) benign(0.006) TCGA-BR-8361-01 11 108044068 108044069 - T NPAT Frame_Shift_Ins p.S548Kfs*5 0.29 TCGA-BR-8361-01 11 108047089 108047091 TTC - NPAT In_Frame_Del p.K338del 0.27 TCGA-BR-8361-01 11 108160451 108160451 A - ATM Frame_Shift_Del p.S1455Vfs*3 0.33 TCGA-BR-8361-01 11 110485315 110485315 G T ARHGAP20 Silent p.I200I 0.23 TCGA-BR-8361-01 11 111228334 111228334 G T POU2AF1 Missense_Mutation p.P98T 0.23 deleterious(0) probably_damaging(1) TCGA-BR-8361-01 11 111431071 111431071 T A LAYN Missense_Mutation p.L346Q 0.23 deleterious(0) probably_damaging(0.933) TCGA-BR-8361-01 11 11292743 11292743 C T GALNT18 Missense_Mutation p.C591Y 0.29 deleterious(0) probably_damaging(0.999) TCGA-BR-8361-01 11 113295140 113295140 C T DRD2 Silent p.V78V 0.10 TCGA-BR-8361-01 11 113853960 113853960 C A HTR3A Missense_Mutation p.P171T 0.23 deleterious(0.02) possibly_damaging(0.559) TCGA-BR-8361-01 11 113860366 113860366 C T HTR3A Nonsense_Mutation p.R478* 0.23 TCGA-BR-8361-01 11 114278581 114278581 A G RBM7 3'UTR 0.40 TCGA-BR-8361-01 11 115047097 115047097 A - CADM1 3'UTR 0.26 TCGA-BR-8361-01 11 117308626 117308626 T C DSCAML1 Missense_Mutation p.K1533E 0.29 deleterious(0.01) possibly_damaging(0.831) TCGA-BR-8361-01 11 118404781 118404781 C T TMEM25 Missense_Mutation p.P292S 0.14 deleterious(0) probably_damaging(0.999) TCGA-BR-8361-01 11 118771708 118771708 G A BCL9L Missense_Mutation p.S915L 0.18 possibly_damaging(0.796) TCGA-BR-8361-01 11 118779296 118779296 G - BCL9L Frame_Shift_Del p.P32Lfs*13 0.22 TCGA-BR-8361-01 11 118889337 118889337 G A TRAPPC4 5'UTR 0.33 TCGA-BR-8361-01 11 11974417 11974417 A C USP47 Missense_Mutation p.K1170T 0.33 deleterious(0.01) probably_damaging(0.958) TCGA-BR-8361-01 11 120099911 120099911 G - OAF 3'UTR 0.53 TCGA-BR-8361-01 11 121023760 121023760 G A TECTA Missense_Mutation p.G1426S 0.24 deleterious(0) probably_damaging(1) TCGA-BR-8361-01 11 121177765 121177765 G A SC5D Splice_Site p.X149_splice 0.45 TCGA-BR-8361-01 11 121414325 121414325 G A SORL1 Missense_Mutation p.G585D 0.18 deleterious(0.01) probably_damaging(0.947) TCGA-BR-8361-01 11 12241975 12241975 C T MICAL2 Silent p.L392L 0.10 TCGA-BR-8361-01 11 126075366 126075366 T C RPUSD4 Missense_Mutation p.T265A 0.26 deleterious(0.04) probably_damaging(0.996) TCGA-BR-8361-01 11 126146084 126146084 G A FOXRED1 Missense_Mutation p.G314D 0.22 tolerated(0.13) benign(0.06) TCGA-BR-8361-01 11 128839760 128839760 A C ARHGAP32 Missense_Mutation p.V1769G 0.13 deleterious(0) possibly_damaging(0.664) TCGA-BR-8361-01 11 128868349 128868349 C T ARHGAP32 Missense_Mutation p.G340S 0.14 deleterious(0) possibly_damaging(0.74) TCGA-BR-8361-01 11 129785593 129785593 C T PRDM10 Missense_Mutation p.V834I 0.26 tolerated(0.12) probably_damaging(0.987) TCGA-BR-8361-01 11 130278394 130278394 G A ADAMTS8 Silent p.S688S 0.20 TCGA-BR-8361-01 11 130748199 130748199 C T SNX19 3'UTR 0.24 TCGA-BR-8361-01 11 131240682 131240682 A G NTM 5'UTR 0.10 TCGA-BR-8361-01 11 133714470 133714470 T A SPATA19 Silent p.V67V 0.21 TCGA-BR-8361-01 11 13399935 13399935 G A ARNTL Missense_Mutation p.R488Q 0.25 tolerated(0.35) benign(0.256) TCGA-BR-8361-01 11 134023240 134023240 G A NCAPD3 Missense_Mutation p.T1424M 0.21 deleterious(0) probably_damaging(0.981) TCGA-BR-8361-01 11 134048586 134048586 G - NCAPD3 Frame_Shift_Del p.Q909Rfs*10 0.20 TCGA-BR-8361-01 11 134147764 134147764 G A GLB1L3 Missense_Mutation p.R107H 0.20 deleterious(0) probably_damaging(1) TCGA-BR-8361-01 11 14808095 14808095 G A PDE3B Missense_Mutation p.R381Q 0.30 deleterious(0.05) benign(0.271) TCGA-BR-8361-01 11 17428576 17428576 G A ABCC8 Silent p.A1007A 0.38 TCGA-BR-8361-01 11 17547960 17547960 C A USH1C Missense_Mutation p.G203V 0.20 deleterious(0.01) benign(0.172) TCGA-BR-8361-01 11 17547982 17547982 G A USH1C Nonsense_Mutation p.R196* 0.20 TCGA-BR-8361-01 11 18636421 18636421 C T SPTY2D1 Missense_Mutation p.R467Q 0.34 tolerated(0.07) benign(0.003) TCGA-BR-8361-01 11 20177966 20177966 C T DBX1 Missense_Mutation p.E315K 0.29 deleterious(0.02) possibly_damaging(0.509) TCGA-BR-8361-01 11 20178193 20178193 C T DBX1 Missense_Mutation p.R239H 0.40 deleterious_low_confidence(0) benign(0.099) TCGA-BR-8361-01 11 2423851 2423851 G A TSSC4 5'UTR 0.29 TCGA-BR-8361-01 11 27695724 27695724 G A BDNF Silent p.G36G 0.35 TCGA-BR-8361-01 11 31824265 31824265 G A PAX6 Missense_Mutation p.S43F 0.47 deleterious(0) probably_damaging(1) TCGA-BR-8361-01 11 32119957 32119957 T C RCN1 Silent p.R170R 0.39 TCGA-BR-8361-01 11 32637520 32637520 T - CCDC73 Frame_Shift_Del p.E448Kfs*5 0.29 TCGA-BR-8361-01 11 33055116 33055116 T A DEPDC7 3'UTR 0.22 TCGA-BR-8361-01 11 33106678 33106679 - G CSTF3 Frame_Shift_Ins p.V704Cfs*3 0.21 TCGA-BR-8361-01 11 33129474 33129474 T - CSTF3 Frame_Shift_Del p.T111Pfs*40 0.33 TCGA-BR-8361-01 11 33350149 33350149 G A HIPK3 Silent p.P397P 0.29 TCGA-BR-8361-01 11 36511764 36511764 G A TRAF6 Missense_Mutation p.P398L 0.28 tolerated(0.1) benign(0.027) TCGA-BR-8361-01 11 36597479 36597479 C T RAG1 Silent p.S875S 0.29 TCGA-BR-8361-01 11 3688986 3688986 G T CHRNA10 Missense_Mutation p.A124E 0.30 tolerated(0.86) benign(0.012) TCGA-BR-8361-01 11 3849264 3849264 G A RHOG Silent p.T35T 0.31 TCGA-BR-8361-01 11 431745 431745 G A ANO9 Missense_Mutation p.T163M 0.34 deleterious(0.01) benign(0.386) TCGA-BR-8361-01 11 43350435 43350436 - A API5 Frame_Shift_Ins p.I375Nfs*24 0.20 TCGA-BR-8361-01 11 4621595 4621595 G A TRIM68 Missense_Mutation p.R457C 0.36 deleterious(0.03) benign(0.038) TCGA-BR-8361-01 11 47594872 47594872 A G KBTBD4 Silent p.D405D 0.29 TCGA-BR-8361-01 11 47600835 47600835 T C NDUFS3 Missense_Mutation p.S28P 0.23 tolerated(0.14) benign(0.001) TCGA-BR-8361-01 11 47825038 47825038 A T NUP160 Nonsense_Mutation p.C909* 0.25 TCGA-BR-8361-01 11 47837094 47837094 G A NUP160 Silent p.A541A 0.26 TCGA-BR-8361-01 11 4869948 4869948 T C OR51S1 Missense_Mutation p.H164R 0.29 deleterious(0.05) probably_damaging(0.999) TCGA-BR-8361-01 11 4903424 4903424 T G OR51T1 Missense_Mutation p.C126G 0.33 deleterious(0) probably_damaging(0.998) TCGA-BR-8361-01 11 490558 490558 C T PTDSS2 Silent p.G480G 0.38 TCGA-BR-8361-01 11 499909 499909 G A RNH1 Silent p.S121S 0.21 TCGA-BR-8361-01 11 51515366 51515366 T - OR4C46 Frame_Shift_Del p.F30Lfs*50 0.27 TCGA-BR-8361-01 11 5411061 5411061 T A OR51M1 Missense_Mutation p.S145T 0.31 tolerated(0.44) benign(0.006) TCGA-BR-8361-01 11 5537636 5537636 G T UBQLNL Silent p.S12S 0.33 TCGA-BR-8361-01 11 55889950 55889950 C G OR8H3 Silent p.L34L 0.31 TCGA-BR-8361-01 11 56143663 56143663 T A OR8U1 Silent p.T188T 0.15 TCGA-BR-8361-01 11 56949831 56949831 C T LRRC55 Missense_Mutation p.A155V 0.19 tolerated(0.15) benign(0.356) TCGA-BR-8361-01 11 57235092 57235092 G A RTN4RL2 Silent p.S14S 0.33 TCGA-BR-8361-01 11 57319786 57319786 G A UBE2L6 3'UTR 0.28 TCGA-BR-8361-01 11 57480227 57480227 G A TMX2 Missense_Mutation p.C46Y 0.32 deleterious(0) probably_damaging(0.999) TCGA-BR-8361-01 11 57958429 57958429 C T OR9Q2 Missense_Mutation p.A156V 0.23 deleterious(0) possibly_damaging(0.483) TCGA-BR-8361-01 11 57983091 57983091 C T OR1S1 Missense_Mutation p.T292I 0.29 deleterious(0) possibly_damaging(0.764) TCGA-BR-8361-01 11 58126075 58126075 G C OR5B17 Missense_Mutation p.I156M 0.42 deleterious_low_confidence(0) possibly_damaging(0.763) TCGA-BR-8361-01 11 59376060 59376061 CT - OSBP Frame_Shift_Del p.S240* 0.26 TCGA-BR-8361-01 11 60183281 60183281 A G MS4A14 Silent p.Q313Q 0.26 TCGA-BR-8361-01 11 60269505 60269505 G A MS4A12 Missense_Mutation p.R155H 0.27 tolerated(0.09) benign(0.008) TCGA-BR-8361-01 11 60640928 60640928 C T ZP1 Missense_Mutation p.R441W 0.23 tolerated(0.09) possibly_damaging(0.459) TCGA-BR-8361-01 11 60642610 60642610 C T ZP1 Nonsense_Mutation p.R555* 0.27 TCGA-BR-8361-01 11 60689491 60689491 T C TMEM109 Missense_Mutation p.Y196H 0.36 deleterious(0) probably_damaging(0.94) TCGA-BR-8361-01 11 60703652 60703652 G A TMEM132A Nonsense_Mutation p.W783* 0.31 TCGA-BR-8361-01 11 60703726 60703726 G A TMEM132A Missense_Mutation p.V808M 0.34 tolerated(0.1) possibly_damaging(0.576) TCGA-BR-8361-01 11 61113877 61113877 G A DAK Missense_Mutation p.A544T 0.18 deleterious(0) probably_damaging(0.998) TCGA-BR-8361-01 11 61512005 61512005 G A DAGLA 3'UTR 0.21 TCGA-BR-8361-01 11 62190532 62190532 A - SCGB1A1 Frame_Shift_Del p.I84* 0.15 TCGA-BR-8361-01 11 62190597 62190597 C T SCGB1A1 3'UTR 0.25 TCGA-BR-8361-01 11 62338497 62338497 G A EEF1G Silent p.G154G 0.22 TCGA-BR-8361-01 11 6265379 6265379 C T CNGA4 Nonsense_Mutation p.Q490* 0.23 TCGA-BR-8361-01 11 63070011 63070012 - A SLC22A10 Frame_Shift_Ins p.E429Rfs*30 0.30 TCGA-BR-8361-01 11 64029923 64029923 C T PLCB3 Missense_Mutation p.R695C 0.38 deleterious(0) probably_damaging(0.951) TCGA-BR-8361-01 11 64675064 64675064 C T ATG2A Silent p.S860S 0.36 TCGA-BR-8361-01 11 64678286 64678286 T C ATG2A Missense_Mutation p.Y536C 0.31 deleterious(0.01) probably_damaging(0.99) TCGA-BR-8361-01 11 6471805 6471805 C T TRIM3 Silent p.T639T 0.25 TCGA-BR-8361-01 11 65269498 65269498 T - MALAT1 RNA 0.26 TCGA-BR-8361-01 11 65380977 65380977 C A MAP3K11 Missense_Mutation p.W84L 0.18 deleterious(0) probably_damaging(0.973) TCGA-BR-8361-01 11 65637409 65637409 G A EFEMP2 Missense_Mutation p.R216C 0.35 deleterious(0.03) probably_damaging(0.953) TCGA-BR-8361-01 11 65638097 65638097 A G EFEMP2 Missense_Mutation p.C134R 0.28 deleterious(0.02) probably_damaging(1) TCGA-BR-8361-01 11 65653050 65653051 AA - FIBP Frame_Shift_Del p.F199Cfs*5 0.32 TCGA-BR-8361-01 11 65810490 65810490 C T GAL3ST3 Missense_Mutation p.V262M 0.37 deleterious(0.02) benign(0.253) TCGA-BR-8361-01 11 66192084 66192084 C T NPAS4 Missense_Mutation p.P575S 0.18 deleterious(0) probably_damaging(0.997) TCGA-BR-8361-01 11 66258993 66258993 A G DPP3 Missense_Mutation p.Q276R 0.28 tolerated(0.55) benign(0.003) TCGA-BR-8361-01 11 66332428 66332428 G T CTSF Silent p.S365S 0.24 TCGA-BR-8361-01 11 66458820 66458820 C T SPTBN2 Missense_Mutation p.A1834T 0.28 tolerated(1) benign(0.002) TCGA-BR-8361-01 11 66461663 66461663 G T SPTBN2 Missense_Mutation p.L1484M 0.10 deleterious(0) probably_damaging(0.999) TCGA-BR-8361-01 11 66469142 66469142 G A SPTBN2 Missense_Mutation p.A910V 0.19 tolerated(0.36) benign(0.055) TCGA-BR-8361-01 11 66472908 66472908 C T SPTBN2 Silent p.S613S 0.24 TCGA-BR-8361-01 11 66605851 66605851 A - C11orf80 Frame_Shift_Del p.K563Rfs*19 0.19 TCGA-BR-8361-01 11 67048615 67048615 G T ADRBK1 Missense_Mutation p.G203C 0.23 deleterious(0) probably_damaging(0.999) TCGA-BR-8361-01 11 67069008 67069008 C T ANKRD13D Silent p.N466N 0.21 TCGA-BR-8361-01 11 67431956 67431956 C T ALDH3B2 Missense_Mutation p.V262M 0.28 tolerated(0.17) benign(0.182) TCGA-BR-8361-01 11 67814962 67814962 G A TCIRG1 Missense_Mutation p.G410R 0.37 deleterious(0) probably_damaging(0.999) TCGA-BR-8361-01 11 70281874 70281874 T - CTTN Intron 0.23 TCGA-BR-8361-01 11 71725778 71725778 C T NUMA1 Missense_Mutation p.R924H 0.19 possibly_damaging(0.888) TCGA-BR-8361-01 11 71729497 71729497 C T NUMA1 Missense_Mutation p.A269T 0.26 benign(0.018) TCGA-BR-8361-01 11 71948467 71948467 A T INPPL1 Missense_Mutation p.D1060V 0.17 tolerated(0.31) possibly_damaging(0.804) TCGA-BR-8361-01 11 72288632 72288632 C T PDE2A Silent p.L874L 0.12 TCGA-BR-8361-01 11 72540426 72540426 C T ATG16L2 Silent p.L617L 0.42 TCGA-BR-8361-01 11 73007627 73007627 G A P2RY6 Missense_Mutation p.E22K 0.24 deleterious(0) probably_damaging(0.998) TCGA-BR-8361-01 11 73785385 73785385 G A C2CD3 Missense_Mutation p.R1622C 0.25 tolerated(0.12) benign(0) TCGA-BR-8361-01 11 74547254 74547254 G - RNF169 Frame_Shift_Del p.G537Efs*15 0.21 TCGA-BR-8361-01 11 74705655 74705655 C - NEU3 Frame_Shift_Del p.T68Pfs*24 0.23 TCGA-BR-8361-01 11 75298727 75298727 C T MAP6 Missense_Mutation p.G607S 0.20 tolerated_low_confidence(0.32) benign(0.192) TCGA-BR-8361-01 11 75826988 75826988 A G UVRAG Silent p.L442L 0.13 TCGA-BR-8361-01 11 76924065 76924065 C A MYO7A Silent p.I2141I 0.60 TCGA-BR-8361-01 11 77602450 77602450 C T INTS4 Missense_Mutation p.R836Q 0.22 deleterious(0.01) possibly_damaging(0.899) TCGA-BR-8361-01 11 77672170 77672170 C T INTS4 Silent p.T162T 0.26 TCGA-BR-8361-01 11 77920763 77920763 T C USP35 Missense_Mutation p.I621T 0.28 tolerated(0.4) unknown(0) TCGA-BR-8361-01 11 78368952 78368952 A - TENM4 3'UTR 0.16 TCGA-BR-8361-01 11 78369022 78369022 T - TENM4 3'UTR 0.22 TCGA-BR-8361-01 11 7846993 7846993 T C OR5P3 Missense_Mutation p.H176R 0.31 deleterious(0) probably_damaging(0.988) TCGA-BR-8361-01 11 788286 788286 A G CEND1 Silent p.P97P 0.27 TCGA-BR-8361-01 11 9167297 9167297 G T DENND5A Missense_Mutation p.P975T 0.33 tolerated(0.08) probably_damaging(0.969) TCGA-BR-8361-01 11 95724695 95724695 G A MAML2 Silent p.L778L 0.27 TCGA-BR-8361-01 11 972112 972112 C T AP2A2 Silent p.R110R 0.27 TCGA-BR-8361-01 12 100930806 100930806 A C NR1H4 Missense_Mutation p.E314D 0.35 tolerated(0.59) probably_damaging(0.992) TCGA-BR-8361-01 12 101720873 101720873 G A UTP20 Missense_Mutation p.R1019Q 0.32 deleterious(0) probably_damaging(0.989) TCGA-BR-8361-01 12 106729456 106729456 T C TCP11L2 Missense_Mutation p.V271A 0.31 tolerated(0.48) benign(0.217) TCGA-BR-8361-01 12 106850939 106850939 A - POLR3B Frame_Shift_Del p.N774Mfs*6 0.24 TCGA-BR-8361-01 12 106890644 106890644 C T POLR3B Missense_Mutation p.R978C 0.37 deleterious(0) possibly_damaging(0.849) TCGA-BR-8361-01 12 107391121 107391121 G A CRY1 Silent p.G512G 0.29 TCGA-BR-8361-01 12 10862613 10862613 C T YBX3 Missense_Mutation p.R225H 0.12 tolerated(0.17) benign(0.016) TCGA-BR-8361-01 12 108686070 108686070 G A CMKLR1 Missense_Mutation p.R224C 0.23 deleterious(0) probably_damaging(0.951) TCGA-BR-8361-01 12 108912785 108912785 G A FICD Missense_Mutation p.V304M 0.36 tolerated(0.05) possibly_damaging(0.563) TCGA-BR-8361-01 12 110019240 110019240 C - MVK Frame_Shift_Del p.A141Rfs*18 0.31 TCGA-BR-8361-01 12 110206636 110206636 G A FAM222A Missense_Mutation p.R301H 0.33 deleterious(0.01) probably_damaging(0.989) TCGA-BR-8361-01 12 111088053 111088053 G A HVCN1 Missense_Mutation p.R226W 0.31 deleterious(0) benign(0.126) TCGA-BR-8361-01 12 111099069 111099069 G A HVCN1 Missense_Mutation p.A69V 0.24 tolerated(0.19) benign(0.004) TCGA-BR-8361-01 12 111317756 111317756 G A CCDC63 Missense_Mutation p.R179Q 0.37 tolerated(0.05) probably_damaging(0.992) TCGA-BR-8361-01 12 11150028 11150028 C T TAS2R20 Silent p.T149T 0.16 TCGA-BR-8361-01 12 111785646 111785647 - C CUX2 Frame_Shift_Ins p.K1329Qfs*10 0.29 TCGA-BR-8361-01 12 113416586 113416586 C T OAS2 Missense_Mutation p.A58V 0.26 tolerated(0.88) benign(0.078) TCGA-BR-8361-01 12 113617042 113617042 C T DDX54 Missense_Mutation p.R157Q 0.32 deleterious(0.04) possibly_damaging(0.747) TCGA-BR-8361-01 12 117604703 117604703 C T FBXO21 Missense_Mutation p.R398Q 0.37 tolerated(0.11) benign(0.037) TCGA-BR-8361-01 12 117669898 117669898 G A NOS1 Missense_Mutation p.P1126S 0.17 tolerated(0.07) probably_damaging(0.979) TCGA-BR-8361-01 12 118598098 118598098 T C TAOK3 Silent p.K735K 0.28 TCGA-BR-8361-01 12 120582472 120582472 C T GCN1L1 Missense_Mutation p.V1775M 0.29 probably_damaging(0.999) TCGA-BR-8361-01 12 120660747 120660747 G T PXN Missense_Mutation p.L138M 0.17 deleterious(0.01) possibly_damaging(0.596) TCGA-BR-8361-01 12 121880228 121880228 G - KDM2B Frame_Shift_Del p.R1006Gfs*37 0.33 TCGA-BR-8361-01 12 122281717 122281718 CT - HPD Frame_Shift_Del p.G285Pfs*30 0.33 TCGA-BR-8361-01 12 123339488 123339488 G A HIP1R Missense_Mutation p.R252Q 0.30 deleterious(0) probably_damaging(0.991) TCGA-BR-8361-01 12 123462950 123462950 G A OGFOD2 Intron 0.37 TCGA-BR-8361-01 12 124233282 124233284 AAC - ATP6V0A2 In_Frame_Del p.N629del 0.30 TCGA-BR-8361-01 12 125438496 125438496 G A DHX37 Silent p.C875C 0.32 TCGA-BR-8361-01 12 12629661 12629661 T C DUSP16 3'UTR 0.58 TCGA-BR-8361-01 12 12672854 12672854 A - DUSP16 Frame_Shift_Del p.L104Sfs*39 0.31 TCGA-BR-8361-01 12 132505628 132505628 A G EP400 Silent p.A1484A 0.19 TCGA-BR-8361-01 12 132546816 132546816 C T EP400 Silent p.N2682N 0.11 TCGA-BR-8361-01 12 133254022 133254023 - A POLE Frame_Shift_Ins p.W243Lfs*20 0.17 TCGA-BR-8361-01 12 133306760 133306760 G A ANKLE2 Missense_Mutation p.P663L 0.27 tolerated(0.12) benign(0.079) TCGA-BR-8361-01 12 14778829 14778829 T - GUCY2C Frame_Shift_Del p.N757Mfs*8 0.36 TCGA-BR-8361-01 12 16510603 16510603 G A MGST1 Missense_Mutation p.R64Q 0.36 tolerated(0.22) benign(0.006) TCGA-BR-8361-01 12 18234035 18234035 A - RERGL 3'UTR 0.39 TCGA-BR-8361-01 12 1992105 1992105 G A CACNA2D4 Silent p.H471H 0.48 TCGA-BR-8361-01 12 2016659 2016659 G A CACNA2D4 Missense_Mutation p.T243M 0.20 deleterious(0) probably_damaging(0.987) TCGA-BR-8361-01 12 20833222 20833222 C A PDE3A 3'UTR 0.50 TCGA-BR-8361-01 12 26493202 26493202 G A ITPR2 Silent p.G2639G 0.62 TCGA-BR-8361-01 12 26848568 26848568 G A ITPR2 Nonsense_Mutation p.R323* 0.37 TCGA-BR-8361-01 12 27126980 27126981 CT - TM7SF3 Frame_Shift_Del p.R544Afs*9 0.20 TCGA-BR-8361-01 12 3040324 3040324 G A TULP3 Missense_Mutation p.R205Q 0.51 deleterious(0.01) benign(0.383) TCGA-BR-8361-01 12 31240869 31240869 C G DDX11 Intron 0.25 TCGA-BR-8361-01 12 31244687 31244687 C T DDX11 Missense_Mutation p.A375V 0.22 tolerated(0.13) benign(0.052) TCGA-BR-8361-01 12 3131079 3131079 G A TEAD4 Missense_Mutation p.V265M 0.18 deleterious(0) possibly_damaging(0.682) TCGA-BR-8361-01 12 32136019 32136019 C T KIAA1551 Silent p.N710N 0.29 TCGA-BR-8361-01 12 32480705 32480705 A G BICD1 Missense_Mutation p.E439G 0.32 tolerated(0.14) probably_damaging(0.973) TCGA-BR-8361-01 12 32893450 32893450 C T DNM1L Silent p.D664D 0.28 TCGA-BR-8361-01 12 32897883 32897883 T - DNM1L 3'Flank 0.52 TCGA-BR-8361-01 12 40704239 40704239 G A LRRK2 Missense_Mutation p.A1442T 0.36 deleterious(0) probably_damaging(1) TCGA-BR-8361-01 12 42491721 42491722 - A GXYLT1 Frame_Shift_Ins p.H327Sfs*2 0.27 TCGA-BR-8361-01 12 4388038 4388038 C T CCND2 Missense_Mutation p.S175F 0.25 deleterious(0.04) benign(0.192) TCGA-BR-8361-01 12 46320657 46320658 - G SCAF11 Frame_Shift_Ins p.S943Lfs*4 0.26 TCGA-BR-8361-01 12 47173580 47173580 G A SLC38A4 Missense_Mutation p.S214L 0.24 deleterious(0) probably_damaging(0.993) TCGA-BR-8361-01 12 4719362 4719362 A - DYRK4 Frame_Shift_Del p.R355Dfs*12 0.27 TCGA-BR-8361-01 12 47629705 47629705 G A PCED1B Missense_Mutation p.A287T 0.23 tolerated(0.19) benign(0.024) TCGA-BR-8361-01 12 49415900 49415900 C T KMT2D Missense_Mutation p.A5483T 0.18 unknown(0) TCGA-BR-8361-01 12 49421039 49421039 G A KMT2D Nonsense_Mutation p.R4904* 0.34 TCGA-BR-8361-01 12 49432347 49432347 G - KMT2D Frame_Shift_Del p.P2931Hfs*12 0.19 TCGA-BR-8361-01 12 49689013 49689013 C T PRPH Silent p.A10A 0.38 TCGA-BR-8361-01 12 49883260 49883260 C T SPATS2 Missense_Mutation p.R40C 0.38 deleterious(0.02) probably_damaging(0.999) TCGA-BR-8361-01 12 5020887 5020887 G A KCNA1 Missense_Mutation p.E115K 0.43 deleterious(0.01) probably_damaging(0.998) TCGA-BR-8361-01 12 52695659 52695659 C T KRT86 5'UTR 0.12 TCGA-BR-8361-01 12 52912851 52912851 G A KRT5 Missense_Mutation p.P217S 0.32 deleterious(0.02) benign(0.395) TCGA-BR-8361-01 12 53685587 53685587 A G ESPL1 Silent p.G1878G 0.30 TCGA-BR-8361-01 12 54402986 54402987 - G HOXC8 5'UTR 0.34 TCGA-BR-8361-01 12 54428098 54428098 G A HOXC5 Missense_Mutation p.R164H 0.31 deleterious(0) probably_damaging(0.998) TCGA-BR-8361-01 12 54686848 54686848 G A NFE2 Silent p.S144S 0.21 TCGA-BR-8361-01 12 55042068 55042068 A G DCD Missense_Mutation p.L7P 0.28 deleterious_low_confidence(0) possibly_damaging(0.883) TCGA-BR-8361-01 12 57110635 57110635 T - NACA Intron 0.25 TCGA-BR-8361-01 12 57571281 57571281 G A LRP1 Missense_Mutation p.R1423H 0.25 probably_damaging(1) TCGA-BR-8361-01 12 57573274 57573274 T C LRP1 Missense_Mutation p.V1634A 0.22 probably_damaging(0.997) TCGA-BR-8361-01 12 57588352 57588352 C - LRP1 Intron 0.32 TCGA-BR-8361-01 12 57906729 57906729 T C MARS Missense_Mutation p.L650P 0.25 deleterious(0) probably_damaging(0.999) TCGA-BR-8361-01 12 58022542 58022542 C T B4GALNT1 Missense_Mutation p.R319H 0.14 tolerated(0.1) possibly_damaging(0.681) TCGA-BR-8361-01 12 63042385 63042385 G A PPM1H Missense_Mutation p.R477C 0.23 deleterious(0.04) probably_damaging(0.975) TCGA-BR-8361-01 12 64458914 64458914 C T SRGAP1 Missense_Mutation p.A347V 0.38 tolerated(0.3) benign(0.007) TCGA-BR-8361-01 12 64609707 64609707 C T C12orf66 Missense_Mutation p.R91H 0.17 deleterious(0.01) probably_damaging(0.964) TCGA-BR-8361-01 12 66641588 66641588 T C IRAK3 Silent p.S476S 0.33 TCGA-BR-8361-01 12 66773080 66773080 C A GRIP1 Missense_Mutation p.W815C 0.32 deleterious(0) possibly_damaging(0.887) TCGA-BR-8361-01 12 67706721 67706721 T - CAND1 3'UTR 0.36 TCGA-BR-8361-01 12 69126428 69126428 A - NUP107 Frame_Shift_Del p.I672Lfs*3 0.28 TCGA-BR-8361-01 12 69743886 69743886 A G LYZ Splice_Site p.X46_splice 0.22 TCGA-BR-8361-01 12 70671941 70671941 G A CNOT2 5'UTR 0.31 TCGA-BR-8361-01 12 7086386 7086388 GAA - LPCAT3 In_Frame_Del p.F462del 0.17 TCGA-BR-8361-01 12 7188376 7188376 C A C1R Silent p.V474V 0.17 TCGA-BR-8361-01 12 72027125 72027125 A G ZFC3H1 Silent p.I868I 0.30 TCGA-BR-8361-01 12 72037987 72037989 TCT - ZFC3H1 In_Frame_Del p.E464del 0.24 TCGA-BR-8361-01 12 72038781 72038781 T - ZFC3H1 Frame_Shift_Del p.K385Nfs*9 0.26 TCGA-BR-8361-01 12 79693174 79693174 C T SYT1 Missense_Mutation p.S218L 0.26 tolerated(0.05) benign(0.044) TCGA-BR-8361-01 12 82752388 82752388 C T METTL25 Missense_Mutation p.T15M 0.22 tolerated(0.08) benign(0.179) TCGA-BR-8361-01 12 85408218 85408218 T - TSPAN19 3'UTR 0.26 TCGA-BR-8361-01 12 85449692 85449692 A - LRRIQ1 Frame_Shift_Del p.R375Efs*4 0.14 TCGA-BR-8361-01 12 8618103 8618103 T C CLEC6A Missense_Mutation p.W83R 0.44 deleterious(0) probably_damaging(0.999) TCGA-BR-8361-01 12 86373479 86373479 G - MGAT4C Frame_Shift_Del p.P342Lfs*8 0.25 TCGA-BR-8361-01 12 88553984 88553984 A G TMTC3 Missense_Mutation p.Y201C 0.04 deleterious(0) probably_damaging(0.996) TCGA-BR-8361-01 12 91347369 91347369 A - CCER1 Frame_Shift_Del p.L384* 0.26 TCGA-BR-8361-01 12 91348142 91348142 G A CCER1 Silent p.S126S 0.26 TCGA-BR-8361-01 12 91572154 91572154 T C DCN Missense_Mutation p.Q59R 0.31 tolerated(0.11) benign(0.132) TCGA-BR-8361-01 12 95926869 95926869 C T USP44 Silent p.L388L 0.25 TCGA-BR-8361-01 12 99446957 99446958 - T ANKS1B Frame_Shift_Ins p.I919Nfs*5 0.35 TCGA-BR-8361-01 13 103443278 103443278 T C KDELC1 Silent p.K352K 0.40 TCGA-BR-8361-01 13 108518413 108518413 A T FAM155A Missense_Mutation p.S178T 0.33 tolerated(0.08) benign(0.143) TCGA-BR-8361-01 13 108518443 108518443 G T FAM155A Missense_Mutation p.L168M 0.30 tolerated_low_confidence(0.16) probably_damaging(0.998) TCGA-BR-8361-01 13 108518697 108518697 T C FAM155A Missense_Mutation p.Q83R 0.44 tolerated_low_confidence(0.61) benign(0.002) TCGA-BR-8361-01 13 109672094 109672094 A G MYO16 Silent p.E855E 0.14 TCGA-BR-8361-01 13 110835349 110835350 - G COL4A1 Frame_Shift_Ins p.G696Rfs*6 0.22 TCGA-BR-8361-01 13 113731491 113731491 C T MCF2L Silent p.P542P 0.50 TCGA-BR-8361-01 13 114773011 114773011 T G RASA3 Missense_Mutation p.E580D 0.16 deleterious(0.02) possibly_damaging(0.873) TCGA-BR-8361-01 13 115070300 115070300 C T UPF3A Missense_Mutation p.R447C 0.41 deleterious(0.03) benign(0.037) TCGA-BR-8361-01 13 19755916 19755916 C T TUBA3C 5'UTR 0.32 TCGA-BR-8361-01 13 19997096 19997096 T C TPTE2 3'UTR 0.16 TCGA-BR-8361-01 13 22245936 22245936 C - FGF9 5'UTR 0.34 TCGA-BR-8361-01 13 23909643 23909643 T - SACS Frame_Shift_Del p.K2791Rfs*12 0.12 TCGA-BR-8361-01 13 23911987 23911987 T C SACS Missense_Mutation p.K2010E 0.26 benign(0.028) TCGA-BR-8361-01 13 24460522 24460522 C T MIPEP Missense_Mutation p.V105M 0.33 deleterious(0) probably_damaging(0.974) TCGA-BR-8361-01 13 25480581 25480581 G A CENPJ Missense_Mutation p.P532L 0.31 tolerated(0.72) benign(0.001) TCGA-BR-8361-01 13 26343303 26343303 G A ATP8A2 Missense_Mutation p.G835D 0.30 deleterious(0) probably_damaging(0.997) TCGA-BR-8361-01 13 28122585 28122585 C T LNX2 Missense_Mutation p.V654I 0.33 deleterious(0.04) probably_damaging(0.999) TCGA-BR-8361-01 13 28367782 28367782 C T GSX1 Silent p.R164R 0.35 TCGA-BR-8361-01 13 28608271 28608271 T C FLT3 Silent p.R595R 0.25 TCGA-BR-8361-01 13 28626756 28626756 G A FLT3 Silent p.D180D 0.24 TCGA-BR-8361-01 13 28959039 28959039 T A FLT1 Missense_Mutation p.K700I 0.23 tolerated(0.38) benign(0.021) TCGA-BR-8361-01 13 29599849 29599849 G T MTUS2 Missense_Mutation p.E348D 0.32 tolerated(0.48) benign(0.003) TCGA-BR-8361-01 13 31495959 31495959 C T MEDAG Nonsense_Mutation p.R255* 0.26 TCGA-BR-8361-01 13 31711624 31711624 G A HSPH1 Missense_Mutation p.P803L 0.36 deleterious(0) probably_damaging(0.999) TCGA-BR-8361-01 13 31732954 31732954 C T HSPH1 Missense_Mutation p.A52T 0.28 deleterious(0) probably_damaging(0.968) TCGA-BR-8361-01 13 32930668 32930668 A - BRCA2 Frame_Shift_Del p.T2515Hfs*9 0.23 TCGA-BR-8361-01 13 36049497 36049497 C T MAB21L1 Missense_Mutation p.R260H 0.31 deleterious(0.04) possibly_damaging(0.903) TCGA-BR-8361-01 13 37583617 37583617 C T SUPT20H 3'Flank 0.24 TCGA-BR-8361-01 13 39262698 39262698 G A FREM2 Missense_Mutation p.R406H 0.27 tolerated(0.1) benign(0.31) TCGA-BR-8361-01 13 42871202 42871202 T C AKAP11 Silent p.L79L 0.27 TCGA-BR-8361-01 13 46544501 46544501 A G ZC3H13 Silent p.D856D 0.33 TCGA-BR-8361-01 13 48835401 48835401 G A ITM2B 3'UTR 0.24 TCGA-BR-8361-01 13 50034245 50034245 G A SETDB2 Missense_Mutation p.D7N 0.24 deleterious(0.02) benign(0.334) TCGA-BR-8361-01 13 52598190 52598190 C T ALG11 Silent p.N108N 0.39 TCGA-BR-8361-01 13 53420348 53420348 A G PCDH8 Missense_Mutation p.S742P 0.34 tolerated(0.32) benign(0.024) TCGA-BR-8361-01 13 53421738 53421738 G A PCDH8 Silent p.N278N 0.38 TCGA-BR-8361-01 13 58208709 58208709 G A PCDH17 Missense_Mutation p.A677T 0.32 deleterious(0.01) probably_damaging(1) TCGA-BR-8361-01 13 67801602 67801602 G A PCDH9 Missense_Mutation p.A324V 0.35 deleterious(0.03) possibly_damaging(0.701) TCGA-BR-8361-01 13 77589682 77589682 C T FBXL3 Missense_Mutation p.V169I 0.26 tolerated(0.34) benign(0.016) TCGA-BR-8361-01 13 88330296 88330296 G A SLITRK5 Missense_Mutation p.A885T 0.26 tolerated(0.44) benign(0.002) TCGA-BR-8361-01 14 104206767 104206767 G A PPP1R13B Silent p.T662T 0.47 TCGA-BR-8361-01 14 106494406 106494406 G A IGHV2-5 Missense_Mutation p.T29M 0.58 deleterious(0) benign(0.205) TCGA-BR-8361-01 14 107178820 107178820 T C IGHV2-70 Missense_Mutation p.I119M 0.53 tolerated(0.21) benign(0.001) TCGA-BR-8361-01 14 21827736 21827736 C T SUPT16H Silent p.T736T 0.36 TCGA-BR-8361-01 14 21993446 21993446 C - SALL2 Frame_Shift_Del p.G139Afs*2 0.23 TCGA-BR-8361-01 14 22102264 22102264 G T OR10G2 Silent p.T245T 0.46 TCGA-BR-8361-01 14 22932794 22932794 C T TRDC Silent p.N103N 0.36 TCGA-BR-8361-01 14 23523355 23523355 G A CDH24 Missense_Mutation p.R323C 0.28 deleterious(0) possibly_damaging(0.783) TCGA-BR-8361-01 14 23829044 23829044 G T EFS Missense_Mutation p.P215T 0.32 deleterious(0.02) probably_damaging(0.99) TCGA-BR-8361-01 14 23853869 23853869 G A MYH6 Missense_Mutation p.R1783C 0.28 deleterious(0) probably_damaging(0.999) TCGA-BR-8361-01 14 23871981 23871981 G A MYH6 Silent p.Y309Y 0.50 TCGA-BR-8361-01 14 24040511 24040511 G A JPH4 Missense_Mutation p.R477W 0.33 tolerated(0.14) probably_damaging(0.982) TCGA-BR-8361-01 14 24543949 24543949 C T CPNE6 Missense_Mutation p.P206L 0.43 deleterious(0.01) possibly_damaging(0.749) TCGA-BR-8361-01 14 24589034 24589034 C T DCAF11 Missense_Mutation p.R341W 0.34 deleterious(0) probably_damaging(0.96) TCGA-BR-8361-01 14 24658815 24658815 C T TM9SF1 Missense_Mutation p.G543S 0.30 tolerated(0.14) possibly_damaging(0.661) TCGA-BR-8361-01 14 24879282 24879282 C T NYNRIN Missense_Mutation p.A761V 0.26 tolerated_low_confidence(0.27) benign(0.006) TCGA-BR-8361-01 14 30135310 30135310 G C PRKD1 Missense_Mutation p.L170V 0.38 deleterious(0) possibly_damaging(0.764) TCGA-BR-8361-01 14 31380367 31380367 C T STRN3 Missense_Mutation p.G534S 0.30 deleterious(0.02) benign(0.376) TCGA-BR-8361-01 14 31777196 31777196 C T AL136418.1 5'Flank 0.26 TCGA-BR-8361-01 14 35872932 35872932 G C NFKBIA Missense_Mutation p.D100E 0.28 tolerated(0.2) benign(0.105) TCGA-BR-8361-01 14 36988395 36988395 G A NKX2-1 Silent p.H86H 0.31 TCGA-BR-8361-01 14 38725131 38725131 C T CLEC14A Missense_Mutation p.A33T 0.40 tolerated(0.06) benign(0.195) TCGA-BR-8361-01 14 47530771 47530771 T - MDGA2 Frame_Shift_Del p.G403Dfs*22 0.22 TCGA-BR-8361-01 14 50862593 50862593 G T CDKL1 5'UTR 0.14 TCGA-BR-8361-01 14 51219236 51219236 C A NIN Missense_Mutation p.Q1650H 0.29 deleterious(0) possibly_damaging(0.889) TCGA-BR-8361-01 14 51347195 51347195 G A ABHD12B Missense_Mutation p.E121K 0.26 tolerated(0.65) benign(0.008) TCGA-BR-8361-01 14 52534720 52534720 G - NID2 Frame_Shift_Del p.A131Qfs*33 0.22 TCGA-BR-8361-01 14 54944856 54944856 C T GMFB Missense_Mutation p.E127K 0.33 deleterious(0.01) possibly_damaging(0.87) TCGA-BR-8361-01 14 55408168 55408169 AA - WDHD1 3'UTR 0.56 TCGA-BR-8361-01 14 56763702 56763702 C T PELI2 Missense_Mutation p.P361S 0.25 tolerated(0.15) benign(0.044) TCGA-BR-8361-01 14 58606016 58606016 C T C14orf37 Missense_Mutation p.V21I 0.21 tolerated(0.25) benign(0) TCGA-BR-8361-01 14 58606066 58606066 G A C14orf37 Missense_Mutation p.P4L 0.33 deleterious(0) possibly_damaging(0.859) TCGA-BR-8361-01 14 59793693 59793693 G A DAAM1 Silent p.A452A 0.28 TCGA-BR-8361-01 14 59826194 59826194 C T DAAM1 Nonsense_Mutation p.R879* 0.24 TCGA-BR-8361-01 14 59950727 59950727 A G L3HYPDH Missense_Mutation p.M103T 0.31 deleterious(0) probably_damaging(1) TCGA-BR-8361-01 14 62242911 62242911 T - SNAPC1 Frame_Shift_Del p.F213Lfs*7 0.25 TCGA-BR-8361-01 14 63483611 63483611 G A KCNH5 Silent p.D45D 0.32 TCGA-BR-8361-01 14 65208053 65208053 G A PLEKHG3 Silent p.A550A 0.27 TCGA-BR-8361-01 14 65399050 65399050 T - CHURC1 3'UTR 0.33 TCGA-BR-8361-01 14 69584873 69584873 C T DCAF5 Missense_Mutation p.R173Q 0.46 deleterious(0) probably_damaging(0.998) TCGA-BR-8361-01 14 72138134 72138134 G A SIPA1L1 Missense_Mutation p.E852K 0.32 deleterious(0.01) probably_damaging(0.981) TCGA-BR-8361-01 14 72165808 72165809 - G SIPA1L1 Frame_Shift_Ins p.T1165Hfs*16 0.35 TCGA-BR-8361-01 14 74516522 74516523 AA - CCDC176 Frame_Shift_Del p.K304Rfs*3 0.35 TCGA-BR-8361-01 14 75514685 75514685 A C MLH3 Silent p.T558T 0.53 TCGA-BR-8361-01 14 79181374 79181374 C T NRXN3 Nonsense_Mutation p.Q273* 0.26 TCGA-BR-8361-01 14 89206753 89206753 C T EML5 Missense_Mutation p.R230Q 0.48 deleterious(0.01) possibly_damaging(0.601) TCGA-BR-8361-01 14 90871151 90871151 A C CALM1 3'UTR 0.50 TCGA-BR-8361-01 14 92790255 92790255 C T SLC24A4 Silent p.C27C 0.56 TCGA-BR-8361-01 15 100272041 100272041 C T LYSMD4 Missense_Mutation p.A26T 0.17 deleterious_low_confidence(0.01) benign(0.008) TCGA-BR-8361-01 15 100514714 100514714 T C ADAMTS17 Missense_Mutation p.I1061V 0.29 tolerated(0.46) probably_damaging(0.986) TCGA-BR-8361-01 15 101775512 101775512 C T CHSY1 Silent p.G197G 0.22 TCGA-BR-8361-01 15 102194734 102194734 T - TARSL2 3'UTR 0.17 TCGA-BR-8361-01 15 22368649 22368649 T G OR4M2 Missense_Mutation p.L25R 0.14 tolerated(0.3) probably_damaging(0.944) TCGA-BR-8361-01 15 22383027 22383027 C T OR4N4 Silent p.I185I 0.24 TCGA-BR-8361-01 15 22999351 22999351 G A CYFIP1 Missense_Mutation p.A1075T 0.28 deleterious(0.03) possibly_damaging(0.477) TCGA-BR-8361-01 15 23811405 23811405 C - MKRN3 Frame_Shift_Del p.P161Rfs*10 0.26 TCGA-BR-8361-01 15 25227367 25227367 T - SNRPN 3'Flank 0.31 TCGA-BR-8361-01 15 25331718 25331718 C T SNORD116-19 RNA 0.21 TCGA-BR-8361-01 15 27725833 27725833 A - GABRG3 Frame_Shift_Del p.N206Ifs*28 0.25 TCGA-BR-8361-01 15 28117031 28117031 T C OCA2 Missense_Mutation p.E706G 0.22 tolerated(0.06) probably_damaging(0.96) TCGA-BR-8361-01 15 28901107 28901107 A - HERC2P9 RNA 0.16 TCGA-BR-8361-01 15 30659622 30659622 C G CHRFAM7A Missense_Mutation p.W240S 0.13 deleterious(0.01) probably_damaging(0.993) TCGA-BR-8361-01 15 30659688 30659688 A G CHRFAM7A Missense_Mutation p.V218A 0.19 deleterious(0) probably_damaging(0.976) TCGA-BR-8361-01 15 30664463 30664463 C T CHRFAM7A Missense_Mutation p.R137H 0.25 deleterious(0) probably_damaging(0.953) TCGA-BR-8361-01 15 31210380 31210380 A G FAN1 Missense_Mutation p.T609A 0.29 tolerated(1) benign(0) TCGA-BR-8361-01 15 34434534 34434534 A G KATNBL1 3'UTR 0.20 TCGA-BR-8361-01 15 35087014 35087014 G A ACTC1 5'UTR 0.22 TCGA-BR-8361-01 15 38243532 38243532 T - TMCO5A 3'UTR 0.50 TCGA-BR-8361-01 15 40659686 40659686 C - DISP2 Frame_Shift_Del p.W460Gfs*22 0.22 TCGA-BR-8361-01 15 40661852 40661852 C A DISP2 Missense_Mutation p.T1180K 0.19 deleterious(0.04) probably_damaging(1) TCGA-BR-8361-01 15 40751414 40751414 A G BAHD1 Missense_Mutation p.K251E 0.37 deleterious(0) probably_damaging(0.977) TCGA-BR-8361-01 15 40865992 40865992 C A RPUSD2 Missense_Mutation p.N390K 0.09 deleterious(0) probably_damaging(0.979) TCGA-BR-8361-01 15 40915924 40915924 C T CASC5 Silent p.T1180T 0.29 TCGA-BR-8361-01 15 41105091 41105091 C T ZFYVE19 Missense_Mutation p.P341S 0.21 deleterious(0.01) probably_damaging(0.994) TCGA-BR-8361-01 15 41794294 41794294 G A ITPKA Silent p.T301T 0.31 TCGA-BR-8361-01 15 42441943 42441943 G T PLA2G4F Missense_Mutation p.L343M 0.36 tolerated(0.06) benign(0.373) TCGA-BR-8361-01 15 42743714 42743714 T C ZNF106 Silent p.V229V 0.28 TCGA-BR-8361-01 15 43548790 43548790 G T TGM5 Silent p.R177R 0.37 TCGA-BR-8361-01 15 43814120 43814120 G A MAP1A Missense_Mutation p.R150Q 0.35 probably_damaging(0.983) TCGA-BR-8361-01 15 44166366 44166366 C - FRMD5 Frame_Shift_Del p.G477Efs*3 0.28 TCGA-BR-8361-01 15 44907730 44907730 A C SPG11 Missense_Mutation p.F957V 0.31 deleterious(0) possibly_damaging(0.765) TCGA-BR-8361-01 15 45436333 45436333 G A DUOX1 Missense_Mutation p.R679H 0.16 deleterious(0) possibly_damaging(0.809) TCGA-BR-8361-01 15 45567837 45567837 A - SLC28A2 3'UTR 0.23 TCGA-BR-8361-01 15 48460873 48460873 A G MYEF2 Missense_Mutation p.Y109H 0.27 deleterious(0) probably_damaging(0.996) TCGA-BR-8361-01 15 48797303 48797303 G A FBN1 Missense_Mutation p.R627C 0.32 possibly_damaging(0.65) TCGA-BR-8361-01 15 51860757 51860757 T A DMXL2 Splice_Site p.X72_splice 0.34 TCGA-BR-8361-01 15 52005589 52005589 G A SCG3 Missense_Mutation p.D423N 0.21 tolerated_low_confidence(1) benign(0.001) TCGA-BR-8361-01 15 52254643 52254643 G A LEO1 Missense_Mutation p.R288C 0.33 deleterious(0.01) possibly_damaging(0.634) TCGA-BR-8361-01 15 53049695 53049695 A - ONECUT1 3'UTR 0.27 TCGA-BR-8361-01 15 53081395 53081395 G A ONECUT1 Silent p.H229H 0.39 TCGA-BR-8361-01 15 56122114 56122114 C T NEDD4 Missense_Mutation p.G1242D 0.15 deleterious(0) probably_damaging(0.999) TCGA-BR-8361-01 15 56388334 56388334 C - RFX7 Frame_Shift_Del p.G531Efs*60 0.29 TCGA-BR-8361-01 15 59506895 59506895 C T MYO1E Missense_Mutation p.D378N 0.20 tolerated(0.61) possibly_damaging(0.688) TCGA-BR-8361-01 15 60770232 60770232 G T NARG2 5'UTR 0.27 TCGA-BR-8361-01 15 63632625 63632625 C T CA12 Silent p.P203P 0.35 TCGA-BR-8361-01 15 63947967 63947967 T C HERC1 Missense_Mutation p.Y3353C 0.29 benign(0.004) TCGA-BR-8361-01 15 64005666 64005666 G A HERC1 Missense_Mutation p.A1450V 0.34 possibly_damaging(0.791) TCGA-BR-8361-01 15 64497118 64497118 T - CSNK1G1 Frame_Shift_Del p.I266Lfs*72 0.26 TCGA-BR-8361-01 15 66169844 66169844 G A RAB11A Missense_Mutation p.R72Q 0.28 deleterious_low_confidence(0) probably_damaging(0.959) TCGA-BR-8361-01 15 66206166 66206166 C T MEGF11 Silent p.R873R 0.29 TCGA-BR-8361-01 15 68438921 68438921 A - PIAS1 Frame_Shift_Del p.N239Mfs*47 0.28 TCGA-BR-8361-01 15 69339850 69339850 C T NOX5 Missense_Mutation p.A597V 0.31 deleterious(0.02) probably_damaging(0.979) TCGA-BR-8361-01 15 69548303 69548303 A - GLCE Frame_Shift_Del p.R55Efs*11 0.21 TCGA-BR-8361-01 15 69561312 69561312 A - GLCE Frame_Shift_Del p.K529Nfs*114 0.25 TCGA-BR-8361-01 15 72190441 72190441 C T MYO9A Missense_Mutation p.C1468Y 0.47 tolerated_low_confidence(1) benign(0) TCGA-BR-8361-01 15 72432053 72432053 A G SENP8 Missense_Mutation p.H30R 0.23 tolerated(1) benign(0.002) TCGA-BR-8361-01 15 72612004 72612004 C T CELF6 Missense_Mutation p.R71H 0.55 deleterious(0.03) benign(0.043) TCGA-BR-8361-01 15 72875617 72875617 A G ARIH1 Missense_Mutation p.E553G 0.22 tolerated(0.06) possibly_damaging(0.756) TCGA-BR-8361-01 15 73862645 73862645 G A NPTN Silent p.N320N 0.21 TCGA-BR-8361-01 15 73991987 73991987 C T CD276 Missense_Mutation p.R3C 0.25 tolerated_low_confidence(0.09) benign(0) TCGA-BR-8361-01 15 74315664 74315664 C A PML Missense_Mutation p.S366R 0.56 tolerated(0.31) benign(0.022) TCGA-BR-8361-01 15 74425529 74425529 C T ISLR2 Missense_Mutation p.A145V 0.18 deleterious(0.01) possibly_damaging(0.667) TCGA-BR-8361-01 15 74425935 74425935 C T ISLR2 Silent p.T280T 0.17 TCGA-BR-8361-01 15 74703284 74703284 C T SEMA7A Missense_Mutation p.R561H 0.23 deleterious(0.01) probably_damaging(0.974) TCGA-BR-8361-01 15 74888250 74888250 C T ARID3B 3'UTR 0.33 TCGA-BR-8361-01 15 75013639 75013639 C T CYP1A1 Missense_Mutation p.R356Q 0.38 tolerated(0.71) benign(0.004) TCGA-BR-8361-01 15 75310770 75310770 C T SCAMP5 Missense_Mutation p.A136V 0.19 tolerated(0.13) probably_damaging(0.935) TCGA-BR-8361-01 15 75651973 75651973 C - MAN2C1 Frame_Shift_Del p.A646Pfs*4 0.32 TCGA-BR-8361-01 15 75980437 75980437 C T CSPG4 Missense_Mutation p.R990H 0.48 deleterious(0.01) benign(0.022) TCGA-BR-8361-01 15 76634139 76634139 C - ISL2 Frame_Shift_Del p.N350Tfs*27 0.24 TCGA-BR-8361-01 15 78316783 78316783 G A TBC1D2B Silent p.L395L 0.53 TCGA-BR-8361-01 15 78453996 78453996 C T IDH3A Silent p.Y121Y 0.19 TCGA-BR-8361-01 15 78473158 78473158 G A ACSBG1 Nonsense_Mutation p.R398* 0.50 TCGA-BR-8361-01 15 78732212 78732212 G A IREB2 Missense_Mutation p.G32D 0.47 tolerated(0.52) benign(0.009) TCGA-BR-8361-01 15 78921669 78921669 G T CHRNB4 Silent p.T326T 0.24 TCGA-BR-8361-01 15 79063618 79063618 C - ADAMTS7 Frame_Shift_Del p.V802Cfs*155 0.31 TCGA-BR-8361-01 15 79317734 79317734 G A RASGRF1 Silent p.G488G 0.20 TCGA-BR-8361-01 15 79749908 79749908 C T KIAA1024 Silent p.S473S 0.25 TCGA-BR-8361-01 15 81611720 81611720 C T STARD5 Silent p.V120V 0.42 TCGA-BR-8361-01 15 83332340 83332340 C A AP3B2 Missense_Mutation p.K804N 0.21 deleterious(0.01) benign(0.403) TCGA-BR-8361-01 15 84241366 84241367 - A SH3GL3 Frame_Shift_Ins p.D129Rfs*4 0.20 TCGA-BR-8361-01 15 86198866 86198866 C T AKAP13 Silent p.G1531G 0.16 TCGA-BR-8361-01 15 89398252 89398252 C - ACAN Frame_Shift_Del p.S814Qfs*131 0.17 TCGA-BR-8361-01 15 89430565 89430565 C - HAPLN3 5'UTR 0.21 TCGA-BR-8361-01 15 89698698 89698698 C T ABHD2 Silent p.C157C 0.18 TCGA-BR-8361-01 15 90163032 90163032 G A TICRR Missense_Mutation p.R1038Q 0.42 tolerated(0.11) probably_damaging(0.946) TCGA-BR-8361-01 15 90168297 90168297 G A TICRR Missense_Mutation p.A1586T 0.45 tolerated(0.18) possibly_damaging(0.57) TCGA-BR-8361-01 15 92706420 92706420 A - SLCO3A1 3'UTR 0.30 TCGA-BR-8361-01 15 93547949 93547951 GAT - CHD2 In_Frame_Del p.D1463del 0.24 TCGA-BR-8361-01 15 99762036 99762036 C T TTC23 Missense_Mutation p.V72I 0.26 tolerated(0.16) benign(0.027) TCGA-BR-8361-01 16 108986 108986 G A RHBDF1 Missense_Mutation p.P712S 0.49 deleterious(0) probably_damaging(1) TCGA-BR-8361-01 16 11836559 11836559 C T TXNDC11 Missense_Mutation p.G10S 0.33 deleterious_low_confidence(0) unknown(0) TCGA-BR-8361-01 16 11876302 11876302 A - ZC3H7A 5'UTR 0.25 TCGA-BR-8361-01 16 12059149 12059149 T G TNFRSF17 5'UTR 0.31 TCGA-BR-8361-01 16 12146024 12146024 G A SNX29 Missense_Mutation p.V357M 0.30 tolerated_low_confidence(0.16) benign(0.051) TCGA-BR-8361-01 16 1416329 1416329 C T UNKL Missense_Mutation p.R652Q 0.36 tolerated(0.81) benign(0.005) TCGA-BR-8361-01 16 14761545 14761545 T - BFAR Frame_Shift_Del p.F406Lfs*52 0.23 TCGA-BR-8361-01 16 15026795 15026795 G - NPIPA1 5'Flank 0.12 TCGA-BR-8361-01 16 1536186 1536186 G - PTX4 Frame_Shift_Del p.G393Efs*57 0.26 TCGA-BR-8361-01 16 16291892 16291892 C T ABCC6 Missense_Mutation p.V442I 0.36 tolerated(0.15) benign(0.009) TCGA-BR-8361-01 16 1818260 1818260 A G MAPK8IP3 Missense_Mutation p.Y1207C 0.27 deleterious(0) probably_damaging(0.995) TCGA-BR-8361-01 16 18847464 18847464 G A SMG1 Silent p.C2616C 0.30 TCGA-BR-8361-01 16 19800166 19800166 G A IQCK Silent p.R204R 0.33 TCGA-BR-8361-01 16 20386161 20386161 C T PDILT Missense_Mutation p.V222I 0.27 deleterious(0.04) benign(0.063) TCGA-BR-8361-01 16 20439120 20439120 A C ACSM5 Missense_Mutation p.K311T 0.12 tolerated(0.3) benign(0.001) TCGA-BR-8361-01 16 20439148 20439148 C T ACSM5 Silent p.V320V 0.13 TCGA-BR-8361-01 16 20851760 20851760 G A AC004381.6 Silent p.Q532Q 0.29 TCGA-BR-8361-01 16 21151866 21151866 C T DNAH3 Silent p.S229S 0.31 TCGA-BR-8361-01 16 2131648 2131648 G A TSC2 Silent p.S1221S 0.30 TCGA-BR-8361-01 16 2168071 2168071 C T PKD1 Missense_Mutation p.G308R 0.27 probably_damaging(0.999) TCGA-BR-8361-01 16 2278400 2278400 G A E4F1 Missense_Mutation p.R62H 0.29 deleterious(0) probably_damaging(1) TCGA-BR-8361-01 16 23208718 23208718 A C SCNN1G Silent p.T349T 0.29 TCGA-BR-8361-01 16 23646981 23646981 T - PALB2 Frame_Shift_Del p.M296* 0.24 TCGA-BR-8361-01 16 24582804 24582804 A - RBBP6 Frame_Shift_Del p.T1475Lfs*20 0.27 TCGA-BR-8361-01 16 24831653 24831653 G A TNRC6A Nonsense_Mutation p.W1758* 0.24 TCGA-BR-8361-01 16 2547019 2547019 C T RP11-20I23.1 Silent p.F290F 0.41 TCGA-BR-8361-01 16 2580894 2580894 T C CEMP1 Missense_Mutation p.K61E 0.43 tolerated_low_confidence(0.44) benign(0) TCGA-BR-8361-01 16 2815963 2815963 C T SRRM2 Missense_Mutation p.R1812W 0.54 unknown(0) TCGA-BR-8361-01 16 28497797 28497797 C T CLN3 Nonsense_Mutation p.W183* 0.27 TCGA-BR-8361-01 16 28620148 28620148 G A SULT1A1 Missense_Mutation p.P10L 0.21 tolerated(0.42) benign(0.013) TCGA-BR-8361-01 16 28845896 28845903 CGGCTGCT ATGATGCA ATXN2L Missense_Mutation p.AA772DD 0.35 TCGA-BR-8361-01 16 28922469 28922469 A C RABEP2 Missense_Mutation p.V309G 0.38 deleterious(0) benign(0.006) TCGA-BR-8361-01 16 29816292 29816292 C T KIF22 Missense_Mutation p.P612L 0.19 deleterious(0.02) benign(0.084) TCGA-BR-8361-01 16 30365563 30365563 C T CD2BP2 Silent p.E53E 0.26 TCGA-BR-8361-01 16 3063810 3063810 C - CLDN9 Frame_Shift_Del p.L151Wfs*225 0.24 TCGA-BR-8361-01 16 30734369 30734369 A G SRCAP Silent p.P1326P 0.09 TCGA-BR-8361-01 16 30745251 30745251 A T SRCAP Silent p.L2177L 0.27 TCGA-BR-8361-01 16 30977360 30977360 C - SETD1A Frame_Shift_Del p.P721Rfs*82 0.24 TCGA-BR-8361-01 16 30991058 30991058 C A SETD1A Silent p.P1317P 0.32 TCGA-BR-8361-01 16 31091754 31091754 G A ZNF646 Missense_Mutation p.G1370D 0.23 deleterious(0) probably_damaging(0.999) TCGA-BR-8361-01 16 31123563 31123563 C A BCKDK Silent p.R406R 0.30 TCGA-BR-8361-01 16 31151942 31151942 G - PRSS36 Frame_Shift_Del p.L680Wfs*6 0.25 TCGA-BR-8361-01 16 31473294 31473294 G A ARMC5 Missense_Mutation p.R176H 0.29 deleterious(0) probably_damaging(0.999) TCGA-BR-8361-01 16 3170262 3170262 C T ZNF205 Missense_Mutation p.A534V 0.23 deleterious(0.02) benign(0.01) TCGA-BR-8361-01 16 31766642 31766642 G A ZNF720 Intron 0.38 TCGA-BR-8361-01 16 32893918 32893918 G A RP11-989E6.3 5'Flank 0.22 TCGA-BR-8361-01 16 331846 331846 G T ARHGDIG Missense_Mutation p.E58D 0.59 deleterious(0.05) benign(0.08) TCGA-BR-8361-01 16 347093 347093 C - AXIN1 Frame_Shift_Del p.E640Kfs*65 0.08 TCGA-BR-8361-01 16 3712984 3712984 C T TRAP1 Intron 0.27 TCGA-BR-8361-01 16 3778706 3778706 G A CREBBP Silent p.G2114G 0.29 TCGA-BR-8361-01 16 426215 426215 G A TMEM8A Missense_Mutation p.T382M 0.24 tolerated(0.27) benign(0.002) TCGA-BR-8361-01 16 46615864 46615864 C T SHCBP1 Missense_Mutation p.C599Y 0.31 tolerated(0.44) benign(0) TCGA-BR-8361-01 16 47001471 47001471 C A DNAJA2 Silent p.G177G 0.30 TCGA-BR-8361-01 16 47192809 47192809 A G ITFG1 Missense_Mutation p.I585T 0.30 deleterious(0) probably_damaging(0.923) TCGA-BR-8361-01 16 49430587 49430587 C T C16orf78 Silent p.C216C 0.40 TCGA-BR-8361-01 16 49669865 49669865 G A ZNF423 Silent p.C1066C 0.45 TCGA-BR-8361-01 16 49670529 49670529 A G ZNF423 Missense_Mutation p.V845A 0.07 tolerated(0.86) benign(0.001) TCGA-BR-8361-01 16 50785592 50785592 C T CYLD Silent p.G194G 0.21 TCGA-BR-8361-01 16 57188381 57188381 T G FAM192A Missense_Mutation p.S196R 0.18 tolerated(0.45) benign(0.043) TCGA-BR-8361-01 16 57794222 57794222 C T KIFC3 Missense_Mutation p.G780E 0.25 deleterious(0.03) benign(0.066) TCGA-BR-8361-01 16 58073833 58073833 C T MMP15 Silent p.R165R 0.22 TCGA-BR-8361-01 16 603450 603450 C T CAPN15 Silent p.S1065S 0.34 TCGA-BR-8361-01 16 61689541 61689541 T C CDH8 Missense_Mutation p.D580G 0.26 deleterious(0) possibly_damaging(0.894) TCGA-BR-8361-01 16 65026835 65026835 G A CDH11 Missense_Mutation p.S209L 0.25 deleterious(0.01) benign(0.038) TCGA-BR-8361-01 16 65032614 65032614 G A CDH11 Missense_Mutation p.T125M 0.30 deleterious(0.01) possibly_damaging(0.801) TCGA-BR-8361-01 16 66424452 66424452 A G CDH5 Missense_Mutation p.T310A 0.38 tolerated(0.12) benign(0.03) TCGA-BR-8361-01 16 67425007 67425007 G A TPPP3 Missense_Mutation p.A3V 0.25 tolerated_low_confidence(0.35) benign(0) TCGA-BR-8361-01 16 67472918 67472918 C T ATP6V0D1 Missense_Mutation p.A258T 0.27 deleterious(0.01) probably_damaging(0.912) TCGA-BR-8361-01 16 67709072 67709072 G A GFOD2 Missense_Mutation p.R382W 0.40 deleterious(0) probably_damaging(0.991) TCGA-BR-8361-01 16 67877120 67877120 C A THAP11 Silent p.A221A 0.46 TCGA-BR-8361-01 16 67983714 67983714 G - SLC12A4 Frame_Shift_Del p.I582Sfs*7 0.12 TCGA-BR-8361-01 16 68330642 68330642 G A SLC7A6 Missense_Mutation p.G461E 0.26 deleterious(0) probably_damaging(0.999) TCGA-BR-8361-01 16 69368940 69368940 C T COG8 Silent p.L299L 0.32 TCGA-BR-8361-01 16 70190834 70190834 G A PDPR 3'UTR 0.36 TCGA-BR-8361-01 16 708547 708547 C G WDR90 Missense_Mutation p.P930R 0.06 tolerated(0.23) benign(0.296) TCGA-BR-8361-01 16 71318132 71318132 C G CMTR2 Missense_Mutation p.E564D 0.29 tolerated(0.39) benign(0.013) TCGA-BR-8361-01 16 71674726 71674726 C T MARVELD3 Silent p.R343R 0.28 TCGA-BR-8361-01 16 71683921 71683921 G A PHLPP2 Silent p.C948C 0.11 TCGA-BR-8361-01 16 72137666 72137666 G - DHX38 Frame_Shift_Del p.G603Efs*22 0.27 TCGA-BR-8361-01 16 721707 721707 C - RHOT2 Frame_Shift_Del p.G296Afs*73 0.26 TCGA-BR-8361-01 16 72993867 72993867 G A ZFHX3 Missense_Mutation p.R60C 0.29 benign(0.002) TCGA-BR-8361-01 16 732226 732226 G A STUB1 Missense_Mutation p.C244Y 0.29 deleterious(0) probably_damaging(0.953) TCGA-BR-8361-01 16 74519763 74519763 C T GLG1 Missense_Mutation p.R501Q 0.32 tolerated(0.29) possibly_damaging(0.837) TCGA-BR-8361-01 16 80577198 80577198 G T DYNLRB2 Missense_Mutation p.R10M 0.22 deleterious(0) probably_damaging(0.999) TCGA-BR-8361-01 16 84163278 84163278 C T HSDL1 Missense_Mutation p.A257T 0.30 tolerated(0.63) benign(0) TCGA-BR-8361-01 16 84213037 84213037 G - TAF1C Frame_Shift_Del p.P707Lfs*7 0.25 TCGA-BR-8361-01 16 84224797 84224797 G A ADAD2 5'UTR 0.37 TCGA-BR-8361-01 16 84270675 84270675 G A KCNG4 Silent p.C139C 0.23 TCGA-BR-8361-01 16 84812550 84812550 C T USP10 Silent p.D753D 0.31 TCGA-BR-8361-01 16 85840495 85840495 C T COX4I1 3'UTR 0.22 TCGA-BR-8361-01 16 87445164 87445164 C T ZCCHC14 Missense_Mutation p.A918T 0.31 deleterious(0) unknown(0) TCGA-BR-8361-01 16 88066731 88066731 C T BANP Silent p.T352T 0.22 TCGA-BR-8361-01 16 88874589 88874589 T C CDT1 Missense_Mutation p.I515T 0.28 deleterious(0.01) possibly_damaging(0.786) TCGA-BR-8361-01 16 89349356 89349356 T - ANKRD11 Frame_Shift_Del p.E1199Rfs*119 0.28 TCGA-BR-8361-01 16 89349686 89349688 CTC - ANKRD11 In_Frame_Del p.E1088del 0.31 TCGA-BR-8361-01 16 89831345 89831346 AG - FANCA Frame_Shift_Del p.W911Dfs*31 0.29 TCGA-BR-8361-01 16 89833613 89833614 - AG FANCA Frame_Shift_Ins p.C846Sfs*44 0.34 TCGA-BR-8361-01 16 89871710 89871710 G A FANCA Silent p.D229D 0.28 TCGA-BR-8361-01 17 10101597 10101597 G A GAS7 Silent p.G37G 0.59 TCGA-BR-8361-01 17 10426958 10426958 T A MYH2 Missense_Mutation p.K1776M 0.07 deleterious(0) probably_damaging(0.992) TCGA-BR-8361-01 17 1486601 1486601 C T SLC43A2 Missense_Mutation p.R416Q 0.67 tolerated(0.06) possibly_damaging(0.573) TCGA-BR-8361-01 17 15928377 15928377 C T TTC19 Silent p.D241D 0.34 TCGA-BR-8361-01 17 15967444 15967444 C T NCOR1 Missense_Mutation p.R1720Q 0.28 benign(0.023) TCGA-BR-8361-01 17 16664902 16664902 T C CCDC144A Missense_Mutation p.V1179A 0.62 tolerated(0.21) benign(0.011) TCGA-BR-8361-01 17 18023754 18023754 C T MYO15A Missense_Mutation p.S547L 0.70 benign(0.32) TCGA-BR-8361-01 17 18965438 18965439 - G SNORD3B-1 RNA 0.30 TCGA-BR-8361-01 17 19641649 19641649 G - ALDH3A1 Frame_Shift_Del p.P445Rfs*6 0.45 TCGA-BR-8361-01 17 21216802 21216802 A G MAP2K3 Splice_Site p.X305_splice 0.12 TCGA-BR-8361-01 17 2279974 2279974 C T SGSM2 Intron 0.34 TCGA-BR-8361-01 17 26657489 26657491 CTT - IFT20 In_Frame_Del p.E90del 0.33 TCGA-BR-8361-01 17 26697012 26697012 A G VTN Silent p.C40C 0.19 TCGA-BR-8361-01 17 26943932 26943932 C - KIAA0100 Frame_Shift_Del p.G1999Vfs*10 0.31 TCGA-BR-8361-01 17 27064895 27064895 C A NEK8 Silent p.A316A 0.38 TCGA-BR-8361-01 17 28773000 28773000 A G CPD Silent p.G945G 0.08 TCGA-BR-8361-01 17 30529799 30529800 - A RHOT1 Frame_Shift_Ins p.I407Dfs*16 0.20 TCGA-BR-8361-01 17 31618778 31618778 C T ASIC2 Missense_Mutation p.R119Q 0.47 tolerated(0.29) benign(0.019) TCGA-BR-8361-01 17 32962034 32962034 C T TMEM132E Silent p.G545G 0.25 TCGA-BR-8361-01 17 32964652 32964652 G A TMEM132E Missense_Mutation p.G786S 0.27 tolerated(0.12) possibly_damaging(0.823) TCGA-BR-8361-01 17 33288913 33288913 G A ZNF830 Missense_Mutation p.D110N 0.34 tolerated(0.84) benign(0) TCGA-BR-8361-01 17 33520662 33520662 A G SLC35G3 Missense_Mutation p.V222A 0.25 tolerated(1) probably_damaging(0.997) TCGA-BR-8361-01 17 33592318 33592319 - C SLFN5 Frame_Shift_Ins p.P699Sfs*22 0.23 TCGA-BR-8361-01 17 3470151 3470151 G A SHPK Silent p.D826D 0.63 TCGA-BR-8361-01 17 34883424 34883424 C T MYO19 Silent p.S86S 0.24 TCGA-BR-8361-01 17 3567173 3567173 C T TAX1BP3 Missense_Mutation p.G82S 0.43 deleterious(0) probably_damaging(1) TCGA-BR-8361-01 17 3567980 3567980 G A TAX1BP3 Missense_Mutation p.T51M 0.70 tolerated(0.06) possibly_damaging(0.801) TCGA-BR-8361-01 17 35896180 35896180 T - SYNRG Frame_Shift_Del p.A1190Pfs*13 0.26 TCGA-BR-8361-01 17 35914112 35914112 G A SYNRG Silent p.T571T 0.28 TCGA-BR-8361-01 17 37099920 37099920 G T FBXO47 Missense_Mutation p.A288D 0.31 deleterious(0) probably_damaging(0.944) TCGA-BR-8361-01 17 37264408 37264408 G A PLXDC1 Missense_Mutation p.S187F 0.28 deleterious(0) probably_damaging(0.999) TCGA-BR-8361-01 17 37564099 37564099 G - MED1 Frame_Shift_Del p.Q1459Rfs*13 0.38 TCGA-BR-8361-01 17 37761954 37761954 C T NEUROD2 Missense_Mutation p.S300N 0.36 deleterious(0) possibly_damaging(0.519) TCGA-BR-8361-01 17 37785805 37785805 C - PPP1R1B Frame_Shift_Del p.H54Tfs*26 0.32 TCGA-BR-8361-01 17 38243031 38243031 C T THRA Silent p.S216S 0.33 TCGA-BR-8361-01 17 39521092 39521092 G A KRT33B Missense_Mutation p.R346W 0.31 deleterious(0.01) benign(0.384) TCGA-BR-8361-01 17 39661430 39661430 G T KRT13 Missense_Mutation p.L125M 0.28 deleterious(0) probably_damaging(1) TCGA-BR-8361-01 17 39671934 39671934 A G KRT15 Missense_Mutation p.L346P 0.30 deleterious(0) probably_damaging(1) TCGA-BR-8361-01 17 3979854 3979854 C A ZZEF1 Intron 0.85 TCGA-BR-8361-01 17 40173568 40173568 T C NKIRAS2 Intron 0.06 TCGA-BR-8361-01 17 40315704 40315704 G - KCNH4 Frame_Shift_Del p.R800Gfs*28 0.43 TCGA-BR-8361-01 17 40733788 40733788 A - FAM134C 3'UTR 0.27 TCGA-BR-8361-01 17 40963564 40963564 T - BECN1 Intron 0.33 TCGA-BR-8361-01 17 41020768 41020768 C T AOC4P RNA 0.25 TCGA-BR-8361-01 17 41113254 41113254 G A AARSD1 Missense_Mutation p.R96W 0.08 deleterious(0.01) possibly_damaging(0.773) TCGA-BR-8361-01 17 41570249 41570249 G A DHX8 Missense_Mutation p.R235Q 0.28 tolerated(0.13) benign(0.026) TCGA-BR-8361-01 17 41847137 41847137 G A DUSP3 Missense_Mutation p.T133M 0.07 deleterious(0) probably_damaging(0.992) TCGA-BR-8361-01 17 42232251 42232251 T C C17orf53 Missense_Mutation p.L531P 0.14 deleterious(0) probably_damaging(0.997) TCGA-BR-8361-01 17 42334898 42334898 G A SLC4A1 Silent p.N482N 0.21 TCGA-BR-8361-01 17 42338958 42338958 G T SLC4A1 Missense_Mutation p.H51Q 0.23 tolerated(0.84) benign(0) TCGA-BR-8361-01 17 42428075 42428075 G A GRN Silent p.S205S 0.27 TCGA-BR-8361-01 17 42466710 42466710 G A ITGA2B Silent p.G44G 0.31 TCGA-BR-8361-01 17 43342571 43342571 G A SPATA32 5'Flank 0.42 TCGA-BR-8361-01 17 45451978 45451978 A - EFCAB13 Frame_Shift_Del p.S342Afs*25 0.23 TCGA-BR-8361-01 17 45754477 45754477 T C KPNB1 Missense_Mutation p.L696P 0.22 deleterious(0) probably_damaging(0.998) TCGA-BR-8361-01 17 45911828 45911828 G A LRRC46 Missense_Mutation p.D52N 0.38 deleterious(0) probably_damaging(0.994) TCGA-BR-8361-01 17 46628527 46628527 G A HOXB3 Silent p.G155G 0.38 TCGA-BR-8361-01 17 47210513 47210513 C A B4GALNT2 Nonsense_Mutation p.C42* 0.44 TCGA-BR-8361-01 17 47284199 47284199 C A GNGT2 Missense_Mutation p.A44S 0.33 tolerated(0.45) benign(0.1) TCGA-BR-8361-01 17 48157649 48157650 - TG ITGA3 Frame_Shift_Ins p.W913Cfs*3 0.20 TCGA-BR-8361-01 17 4836597 4836597 G A GP1BA Missense_Mutation p.R233H 0.31 tolerated(0.12) probably_damaging(0.938) TCGA-BR-8361-01 17 48445469 48445469 A C MRPL27 Missense_Mutation p.L144R 0.29 deleterious(0) probably_damaging(0.999) TCGA-BR-8361-01 17 48777241 48777241 A T ANKRD40 Missense_Mutation p.D99E 0.29 tolerated(1) benign(0) TCGA-BR-8361-01 17 48917430 48917430 C T WFIKKN2 Missense_Mutation p.R261C 0.55 deleterious(0.04) probably_damaging(0.939) TCGA-BR-8361-01 17 49075879 49075879 G A SPAG9 Silent p.S588S 0.25 TCGA-BR-8361-01 17 49710999 49710999 G A CA10 Missense_Mutation p.R268C 0.28 deleterious(0) probably_damaging(0.999) TCGA-BR-8361-01 17 51900843 51900843 T C KIF2B Missense_Mutation p.L150P 0.28 deleterious(0.02) probably_damaging(0.94) TCGA-BR-8361-01 17 51902309 51902309 G A KIF2B Missense_Mutation p.A639T 0.35 tolerated(1) benign(0.038) TCGA-BR-8361-01 17 55065125 55065125 G C SCPEP1 Missense_Mutation p.G129R 0.05 tolerated(0.1) benign(0.063) TCGA-BR-8361-01 17 56274532 56274532 G A EPX Missense_Mutation p.G345D 0.23 deleterious(0.01) probably_damaging(0.986) TCGA-BR-8361-01 17 56435161 56435161 C - RNF43 Frame_Shift_Del p.G659Vfs*41 0.29 TCGA-BR-8361-01 17 56573626 56573626 C T MTMR4 Missense_Mutation p.R626H 0.33 deleterious(0) probably_damaging(0.999) TCGA-BR-8361-01 17 57181748 57181748 G A TRIM37 Missense_Mutation p.A10V 0.31 deleterious(0.01) possibly_damaging(0.878) TCGA-BR-8361-01 17 57761246 57761246 T G CLTC Missense_Mutation p.L1445R 0.39 deleterious(0) probably_damaging(1) TCGA-BR-8361-01 17 58153591 58153591 C T HEATR6 Missense_Mutation p.S76N 0.48 tolerated(0.6) benign(0.014) TCGA-BR-8361-01 17 59118211 59118211 G A BCAS3 Missense_Mutation p.A678T 0.29 tolerated(0.07) probably_damaging(0.994) TCGA-BR-8361-01 17 59972690 59972690 T A INTS2 Missense_Mutation p.I525F 0.26 deleterious(0.01) probably_damaging(0.972) TCGA-BR-8361-01 17 61886281 61886281 G - DDX42 Frame_Shift_Del p.A377Qfs*11 0.23 TCGA-BR-8361-01 17 61950602 61950602 A - CSH2 Frame_Shift_Del p.F36Lfs*64 0.16 TCGA-BR-8361-01 17 62019244 62019244 C A SCN4A Missense_Mutation p.K1466N 0.24 deleterious(0) possibly_damaging(0.848) TCGA-BR-8361-01 17 62518978 62518978 G A CEP95 Missense_Mutation p.V292I 0.36 tolerated(0.31) benign(0.001) TCGA-BR-8361-01 17 62522231 62522231 C - CEP95 Frame_Shift_Del p.Q357Rfs*7 0.21 TCGA-BR-8361-01 17 62528989 62528989 A G CEP95 Missense_Mutation p.M569V 0.23 deleterious(0.03) possibly_damaging(0.671) TCGA-BR-8361-01 17 62589575 62589575 C T SMURF2 Missense_Mutation p.R106H 0.34 tolerated(0.06) possibly_damaging(0.703) TCGA-BR-8361-01 17 62859169 62859169 G A LRRC37A3 Intron 0.29 TCGA-BR-8361-01 17 63223455 63223455 A G RGS9 Missense_Mutation p.D652G 0.33 tolerated_low_confidence(0.15) benign(0.169) TCGA-BR-8361-01 17 63532585 63532585 C - AXIN2 Frame_Shift_Del p.G665Afs*24 0.32 TCGA-BR-8361-01 17 65919019 65919019 C T BPTF Missense_Mutation p.T1874M 0.29 possibly_damaging(0.733) TCGA-BR-8361-01 17 66925324 66925324 C T ABCA8 Missense_Mutation p.G331S 0.21 tolerated(0.58) possibly_damaging(0.499) TCGA-BR-8361-01 17 67075047 67075047 T C ABCA6 3'UTR 0.38 TCGA-BR-8361-01 17 72588248 72588248 G A C17orf77 Silent p.L21L 0.28 TCGA-BR-8361-01 17 7287072 7287072 G A TNK1 Silent p.P157P 0.25 TCGA-BR-8361-01 17 72948429 72948429 C T HID1 Silent p.P693P 0.22 TCGA-BR-8361-01 17 7296968 7296968 G - TMEM256-PLSCR3 Frame_Shift_Del p.F66Sfs*21 0.31 TCGA-BR-8361-01 17 73237030 73237030 C T GGA3 Missense_Mutation p.G352D 0.24 tolerated(0.64) benign(0.005) TCGA-BR-8361-01 17 7366256 7366256 G A ZBTB4 Missense_Mutation p.A682V 0.54 benign(0.011) TCGA-BR-8361-01 17 7578403 7578403 C T TP53 Missense_Mutation p.C176Y 0.62 deleterious(0) probably_damaging(0.995) TCGA-BR-8361-01 17 7612702 7612702 G - EFNB3 Frame_Shift_Del p.G279Vfs*15 0.48 TCGA-BR-8361-01 17 76526469 76526469 C A DNAH17 Missense_Mutation p.W1080C 0.21 probably_damaging(0.998) TCGA-BR-8361-01 17 76803391 76803391 G T USP36 Missense_Mutation p.L579I 0.25 tolerated(0.4) benign(0.124) TCGA-BR-8361-01 17 7735951 7735951 G A DNAH2 Missense_Mutation p.V4261M 0.66 probably_damaging(0.934) TCGA-BR-8361-01 17 77758039 77758039 G A CBX2 Missense_Mutation p.S266N 0.42 tolerated(0.42) benign(0.007) TCGA-BR-8361-01 17 78327386 78327386 G A RNF213 Missense_Mutation p.A3500T 0.36 benign(0.002) TCGA-BR-8361-01 17 79164804 79164804 G A AZI1 Missense_Mutation p.S949L 0.37 tolerated(0.21) benign(0.008) TCGA-BR-8361-01 17 79409626 79409626 A G RP11-1055B8.7 Silent p.A417A 0.29 TCGA-BR-8361-01 17 79512780 79512780 C T C17orf70 Missense_Mutation p.V768I 0.35 tolerated(0.51) benign(0.014) TCGA-BR-8361-01 17 79517945 79517945 T C C17orf70 Missense_Mutation p.H192R 0.24 tolerated(0.5) benign(0.002) TCGA-BR-8361-01 17 79987011 79987011 A G LRRC45 Missense_Mutation p.M451V 0.38 deleterious(0.04) benign(0.021) TCGA-BR-8361-01 17 80039054 80039054 G A FASN Missense_Mutation p.A2194V 0.40 tolerated(0.13) benign(0.009) TCGA-BR-8361-01 17 80442718 80442718 C T NARF Missense_Mutation p.T288M 0.37 tolerated(0.22) benign(0.008) TCGA-BR-8361-01 17 80763856 80763856 C T TBCD Silent p.D352D 0.40 TCGA-BR-8361-01 17 8383817 8383817 C T MYH10 Missense_Mutation p.R1764H 0.79 benign(0.025) TCGA-BR-8361-01 17 9503394 9503394 A G WDR16 Missense_Mutation p.D216G 0.62 deleterious(0.01) possibly_damaging(0.806) TCGA-BR-8361-01 18 10539823 10539823 A G NAPG Missense_Mutation p.N108S 0.30 tolerated(0.16) benign(0.043) TCGA-BR-8361-01 18 11868561 11868561 C T GNAL Silent p.Y310Y 0.40 TCGA-BR-8361-01 18 21736534 21736534 A - CABYR Intron 0.27 TCGA-BR-8361-01 18 224147 224147 C T THOC1 Missense_Mutation p.R414Q 0.33 tolerated(0.14) benign(0.439) TCGA-BR-8361-01 18 2538874 2538874 A - METTL4 3'UTR 0.24 TCGA-BR-8361-01 18 29867407 29867407 G A GAREM Nonsense_Mutation p.R385* 0.34 TCGA-BR-8361-01 18 30803107 30803107 T C CCDC178 Missense_Mutation p.K632R 0.28 tolerated(0.3) benign(0.084) TCGA-BR-8361-01 18 30847010 30847010 T - CCDC178 Frame_Shift_Del p.T427Hfs*23 0.34 TCGA-BR-8361-01 18 30873148 30873148 T - CCDC178 Frame_Shift_Del p.N384Mfs*13 0.26 TCGA-BR-8361-01 18 31263451 31263451 A G ASXL3 Silent p.L266L 0.24 TCGA-BR-8361-01 18 31673513 31673513 G C NOL4 Missense_Mutation p.R230G 0.30 tolerated(0.22) probably_damaging(0.997) TCGA-BR-8361-01 18 32917733 32917733 A G ZNF24 Silent p.D190D 0.17 TCGA-BR-8361-01 18 335079 335079 G A COLEC12 Silent p.P493P 0.38 TCGA-BR-8361-01 18 3879345 3879345 T C DLGAP1 Missense_Mutation p.T242A 0.21 tolerated(0.23) benign(0.009) TCGA-BR-8361-01 18 42531516 42531516 C A SETBP1 Silent p.P737P 0.47 TCGA-BR-8361-01 18 44013421 44013421 G C RNF165 Missense_Mutation p.Q110H 0.26 tolerated(0.05) possibly_damaging(0.862) TCGA-BR-8361-01 18 44260371 44260371 G A ST8SIA5 Silent p.T255T 0.39 TCGA-BR-8361-01 18 44262012 44262012 G - ST8SIA5 Frame_Shift_Del p.I196Sfs*11 0.27 TCGA-BR-8361-01 18 44444187 44444187 T C PIAS2 Missense_Mutation p.Q175R 0.22 tolerated(0.11) benign(0.024) TCGA-BR-8361-01 18 45567053 45567053 A G ZBTB7C Silent p.D142D 0.19 TCGA-BR-8361-01 18 47810865 47810865 C A CXXC1 Missense_Mutation p.R367M 0.27 deleterious(0) probably_damaging(0.993) TCGA-BR-8361-01 18 48575133 48575133 A - SMAD4 Frame_Shift_Del p.K110Nfs*12 0.28 TCGA-BR-8361-01 18 48593495 48593496 AG - SMAD4 Frame_Shift_Del p.E417Sfs*11 0.28 TCGA-BR-8361-01 18 50741932 50741932 C T DCC Missense_Mutation p.P626S 0.32 deleterious(0) probably_damaging(0.998) TCGA-BR-8361-01 18 50976949 50976949 G A DCC Silent p.V1103V 0.33 TCGA-BR-8361-01 18 51690978 51690978 C T MBD2 Missense_Mutation p.A342T 0.14 tolerated(0.23) possibly_damaging(0.466) TCGA-BR-8361-01 18 55019998 55019998 C T ST8SIA3 5'UTR 0.55 TCGA-BR-8361-01 18 57106992 57106992 G A CCBE1 Nonsense_Mutation p.Q278* 0.33 TCGA-BR-8361-01 18 59221521 59221521 G A CDH20 Missense_Mutation p.D667N 0.26 deleterious(0) possibly_damaging(0.827) TCGA-BR-8361-01 18 60985607 60985607 C T BCL2 Missense_Mutation p.R98H 0.25 deleterious(0) benign(0.189) TCGA-BR-8361-01 18 65181248 65181248 T - DSEL Frame_Shift_Del p.I210Yfs*30 0.16 TCGA-BR-8361-01 18 66564824 66564824 T C CCDC102B Intron 0.49 TCGA-BR-8361-01 18 7231375 7231375 A G LRRC30 Missense_Mutation p.H80R 0.31 tolerated(0.91) benign(0.132) TCGA-BR-8361-01 18 72345425 72345425 C T ZNF407 Missense_Mutation p.A817V 0.24 tolerated(0.29) benign(0.004) TCGA-BR-8361-01 18 72346151 72346151 G A ZNF407 Missense_Mutation p.R1059H 0.32 deleterious(0) probably_damaging(0.975) TCGA-BR-8361-01 18 7567767 7567767 G A PTPRM 5'UTR 0.31 TCGA-BR-8361-01 18 77475105 77475105 G A CTDP1 Missense_Mutation p.A549T 0.19 tolerated(0.12) benign(0.211) TCGA-BR-8361-01 18 77659162 77659162 G A KCNG2 Silent p.A249A 0.47 TCGA-BR-8361-01 18 8796287 8796287 G A SOGA2 Missense_Mutation p.A690T 0.34 tolerated(0.39) benign(0.075) TCGA-BR-8361-01 18 8798182 8798182 C T SOGA2 Nonsense_Mutation p.R777* 0.25 TCGA-BR-8361-01 18 8825987 8825987 G A SOGA2 Silent p.S1493S 0.42 TCGA-BR-8361-01 18 9254818 9254819 - G ANKRD12 Frame_Shift_Ins p.N520Efs*3 0.24 TCGA-BR-8361-01 19 10472526 10472526 G - TYK2 Frame_Shift_Del p.L627Sfs*36 0.22 TCGA-BR-8361-01 19 1047260 1047260 C T ABCA7 Silent p.F650F 0.38 TCGA-BR-8361-01 19 10476480 10476480 G T TYK2 Missense_Mutation p.L242M 0.24 deleterious(0.02) benign(0.094) TCGA-BR-8361-01 19 1080463 1080463 C T HMHA1 Missense_Mutation p.A626V 0.32 tolerated(0.12) benign(0.173) TCGA-BR-8361-01 19 11833336 11833336 C A ZNF823 Missense_Mutation p.G338V 0.23 deleterious(0) probably_damaging(0.998) TCGA-BR-8361-01 19 11943816 11943816 G A ZNF440 3'UTR 0.25 TCGA-BR-8361-01 19 12817053 12817053 A G TNPO2 Missense_Mutation p.I542T 0.29 deleterious(0) probably_damaging(0.993) TCGA-BR-8361-01 19 13008601 13008601 G - GCDH Frame_Shift_Del p.N392Mfs*9 0.29 TCGA-BR-8361-01 19 13418632 13418632 G A CACNA1A Silent p.F650F 0.28 TCGA-BR-8361-01 19 13616881 13616881 G A CACNA1A Missense_Mutation p.A53V 0.27 possibly_damaging(0.695) TCGA-BR-8361-01 19 13869981 13869981 C T CCDC130 Silent p.R156R 0.29 TCGA-BR-8361-01 19 14830032 14830032 C A ZNF333 Silent p.S631S 0.07 TCGA-BR-8361-01 19 14863142 14863142 T G EMR2 Missense_Mutation p.K596T 0.20 deleterious(0.04) possibly_damaging(0.589) TCGA-BR-8361-01 19 15198171 15198171 A G OR1I1 Missense_Mutation p.T99A 0.31 tolerated(0.3) benign(0.005) TCGA-BR-8361-01 19 15276888 15276888 G A NOTCH3 Silent p.L1793L 0.27 TCGA-BR-8361-01 19 15511794 15511794 G A AKAP8L Missense_Mutation p.R293C 0.26 deleterious(0) probably_damaging(0.965) TCGA-BR-8361-01 19 15529797 15529797 G C AKAP8L 5'UTR 0.37 TCGA-BR-8361-01 19 1555600 1555600 G A MEX3D Missense_Mutation p.R640C 0.45 deleterious(0) probably_damaging(0.965) TCGA-BR-8361-01 19 16001193 16001193 A G CYP4F2 Silent p.F192F 0.33 TCGA-BR-8361-01 19 16641614 16641614 G A CHERP Missense_Mutation p.A251V 0.40 deleterious(0.04) probably_damaging(0.989) TCGA-BR-8361-01 19 16687637 16687637 G A MED26 Missense_Mutation p.A335V 0.25 tolerated(0.52) benign(0.002) TCGA-BR-8361-01 19 17001347 17001347 G A F2RL3 Missense_Mutation p.R358Q 0.23 tolerated(0.56) benign(0.004) TCGA-BR-8361-01 19 17343175 17343175 C T NR2F6 Missense_Mutation p.G401S 0.28 tolerated_low_confidence(0.5) benign(0.005) TCGA-BR-8361-01 19 17435799 17435799 G A ANO8 Missense_Mutation p.R1020C 0.31 deleterious_low_confidence(0) unknown(0) TCGA-BR-8361-01 19 17919075 17919075 G A B3GNT3 Silent p.P153P 0.40 TCGA-BR-8361-01 19 17955109 17955109 G A JAK3 Missense_Mutation p.R40C 0.42 tolerated(0.21) benign(0.001) TCGA-BR-8361-01 19 18321960 18321960 G A PDE4C Nonsense_Mutation p.R640* 0.39 TCGA-BR-8361-01 19 18507766 18507766 C - LRRC25 Frame_Shift_Del p.G3Afs*19 0.35 TCGA-BR-8361-01 19 1912977 1912977 G A ADAT3 Missense_Mutation p.A311T 0.17 deleterious(0) probably_damaging(0.978) TCGA-BR-8361-01 19 19351410 19351410 A G NCAN Splice_Site p.X1137_splice 0.27 TCGA-BR-8361-01 19 19626094 19626094 G A TSSK6 Missense_Mutation p.A48V 0.33 tolerated(0.18) benign(0.372) TCGA-BR-8361-01 19 19638852 19638852 C - NDUFA13 Frame_Shift_Del p.L120* 0.32 TCGA-BR-8361-01 19 19906351 19906352 TT - ZNF506 Frame_Shift_Del p.K115Rfs*3 0.21 TCGA-BR-8361-01 19 21300002 21300002 G A ZNF714 Missense_Mutation p.D178N 0.34 deleterious(0) benign(0.106) TCGA-BR-8361-01 19 21558670 21558670 G A ZNF738 Splice_Site p.X75_splice 0.39 TCGA-BR-8361-01 19 21607934 21607934 T G ZNF493 3'UTR 0.25 TCGA-BR-8361-01 19 22155306 22155306 T C ZNF208 Missense_Mutation p.K844E 0.28 tolerated(0.24) unknown(0) TCGA-BR-8361-01 19 22271811 22271811 A T ZNF257 Missense_Mutation p.Q420L 0.07 deleterious(0.05) benign(0.003) TCGA-BR-8361-01 19 22780133 22780134 - A RN7SL860P 5'Flank 0.35 TCGA-BR-8361-01 19 2321663 2321663 C T LSM7 3'UTR 0.75 TCGA-BR-8361-01 19 2737116 2737117 - AG SLC39A3 Frame_Shift_Ins p.C47Sfs*22 0.21 TCGA-BR-8361-01 19 2827741 2827741 G T ZNF554 Nonsense_Mutation p.E85* 0.25 TCGA-BR-8361-01 19 33600752 33600752 G A GPATCH1 Missense_Mutation p.S472N 0.24 tolerated(0.13) benign(0.027) TCGA-BR-8361-01 19 36004029 36004029 C T DMKN Missense_Mutation p.A117T 0.39 deleterious(0.03) possibly_damaging(0.794) TCGA-BR-8361-01 19 36038038 36038038 G A TMEM147 Silent p.A149A 0.30 TCGA-BR-8361-01 19 36128234 36128234 G A RBM42 Missense_Mutation p.R437H 0.29 tolerated(0.05) unknown(0) TCGA-BR-8361-01 19 36206345 36206345 G A ZBTB32 Missense_Mutation p.G273S 0.33 deleterious_low_confidence(0) possibly_damaging(0.855) TCGA-BR-8361-01 19 3623901 3623901 G A CACTIN Missense_Mutation p.R143W 0.54 deleterious(0) unknown(0) TCGA-BR-8361-01 19 36276226 36276226 G A ARHGAP33 Silent p.P619P 0.45 TCGA-BR-8361-01 19 36279117 36279117 G A ARHGAP33 Missense_Mutation p.R1056H 0.43 tolerated_low_confidence(1) benign(0.001) TCGA-BR-8361-01 19 36342240 36342240 C T NPHS1 Silent p.A107A 0.37 TCGA-BR-8361-01 19 36431520 36431521 - C LRFN3 Frame_Shift_Ins p.R401Afs*6 0.25 TCGA-BR-8361-01 19 36853090 36853090 C T ZFP14 Nonsense_Mutation p.W20* 0.41 TCGA-BR-8361-01 19 37310974 37310974 T - ZNF790 Frame_Shift_Del p.N91Mfs*8 0.20 TCGA-BR-8361-01 19 3784221 3784221 C T MATK Missense_Mutation p.R89H 0.23 tolerated(0.08) possibly_damaging(0.907) TCGA-BR-8361-01 19 37903985 37903985 A G ZNF569 Silent p.N525N 0.28 TCGA-BR-8361-01 19 39019237 39019237 A G RYR1 Splice_Site p.X3646_splice 0.35 TCGA-BR-8361-01 19 39214943 39214943 C T ACTN4 Silent p.T613T 0.22 TCGA-BR-8361-01 19 40316498 40316498 C T DYRK1B Missense_Mutation p.A583T 0.23 deleterious_low_confidence(0.01) benign(0.09) TCGA-BR-8361-01 19 40320999 40320999 G - DYRK1B Intron 0.24 TCGA-BR-8361-01 19 40376631 40376631 G A FCGBP Missense_Mutation p.P3931S 0.19 possibly_damaging(0.883) TCGA-BR-8361-01 19 40718828 40718828 C T MAP3K10 Nonsense_Mutation p.R557* 0.37 TCGA-BR-8361-01 19 4117504 4117504 G A MAP2K2 Silent p.F72F 0.36 TCGA-BR-8361-01 19 41306665 41306665 C - EGLN2 Frame_Shift_Del p.R65Efs*86 0.24 TCGA-BR-8361-01 19 41442381 41442381 G A CYP2B7P RNA 0.16 TCGA-BR-8361-01 19 41522669 41522670 - C CYP2B6 Frame_Shift_Ins p.Q473Pfs*172 0.20 TCGA-BR-8361-01 19 4164608 4164608 A G CREB3L3 Missense_Mutation p.T229A 0.34 deleterious(0.04) benign(0.018) TCGA-BR-8361-01 19 42398310 42398310 C T ARHGEF1 Silent p.Y240Y 0.19 TCGA-BR-8361-01 19 42399469 42399469 T C ARHGEF1 Missense_Mutation p.S324P 0.33 tolerated(0.05) probably_damaging(0.973) TCGA-BR-8361-01 19 42600366 42600366 C T POU2F2 Silent p.P177P 0.31 TCGA-BR-8361-01 19 42713928 42713928 C T DEDD2 Silent p.R171R 0.27 TCGA-BR-8361-01 19 42753368 42753368 C - ERF Frame_Shift_Del p.G299Efs*12 0.43 TCGA-BR-8361-01 19 42796288 42796288 G A CIC Silent p.P979P 0.23 TCGA-BR-8361-01 19 42838298 42838298 G - MEGF8 Frame_Shift_Del p.G166Vfs*53 0.17 TCGA-BR-8361-01 19 43093693 43093693 T G CEACAM8 Silent p.R207R 0.27 TCGA-BR-8361-01 19 43575989 43575989 T C PSG2 Missense_Mutation p.N276S 0.07 deleterious(0.03) possibly_damaging(0.721) TCGA-BR-8361-01 19 4422729 4422729 A C CHAF1A Missense_Mutation p.K395T 0.22 deleterious(0.01) unknown(0) TCGA-BR-8361-01 19 44515185 44515185 G A ZNF230 Missense_Mutation p.G332R 0.28 deleterious(0.02) probably_damaging(1) TCGA-BR-8361-01 19 44515438 44515438 G A ZNF230 Missense_Mutation p.R416Q 0.29 tolerated(0.06) benign(0) TCGA-BR-8361-01 19 44792637 44792637 T - ZNF235 Frame_Shift_Del p.K317Nfs*154 0.23 TCGA-BR-8361-01 19 46887108 46887108 C T PPP5C Silent p.N257N 0.24 TCGA-BR-8361-01 19 47207633 47207633 C T PRKD2 Missense_Mutation p.E228K 0.39 tolerated(0.24) benign(0.019) TCGA-BR-8361-01 19 47712448 47712450 CTT - SAE1 In_Frame_Del p.F331del 0.18 TCGA-BR-8361-01 19 4817366 4817366 T C TICAM1 Missense_Mutation p.T342A 0.24 tolerated(0.89) benign(0.009) TCGA-BR-8361-01 19 49527335 49527335 C T CGB 5'UTR 0.36 TCGA-BR-8361-01 19 49925684 49925684 G A PTH2 3'UTR 0.22 TCGA-BR-8361-01 19 49969002 49969002 C - ALDH16A1 Frame_Shift_Del p.Y528Mfs*99 0.23 TCGA-BR-8361-01 19 50158042 50158043 CC - SCAF1 Frame_Shift_Del p.P1180Hfs*10 0.30 TCGA-BR-8361-01 19 50411973 50411973 C T NUP62 Silent p.T364T 0.22 TCGA-BR-8361-01 19 50542498 50542498 G A ZNF473 Silent p.T30T 0.26 TCGA-BR-8361-01 19 50812898 50812898 C T MYH14 Missense_Mutation p.R1988C 0.23 deleterious(0) possibly_damaging(0.828) TCGA-BR-8361-01 19 5110825 5110825 C T KDM4B Missense_Mutation p.R371C 0.50 possibly_damaging(0.883) TCGA-BR-8361-01 19 52714705 52714705 T A PPP2R1A Missense_Mutation p.Y155N 0.34 deleterious(0) probably_damaging(0.997) TCGA-BR-8361-01 19 53571146 53571146 C T ZNF160 3'UTR 0.37 TCGA-BR-8361-01 19 53792958 53792958 T C BIRC8 Missense_Mutation p.S224G 0.29 tolerated(0.68) benign(0.071) TCGA-BR-8361-01 19 54233099 54233099 C T MIR518E RNA 0.12 TCGA-BR-8361-01 19 54444823 54444823 A G CACNG7 Missense_Mutation p.Y175C 0.28 deleterious(0) probably_damaging(0.997) TCGA-BR-8361-01 19 5456007 5456007 G A ZNRF4 Missense_Mutation p.D169N 0.36 deleterious(0.03) possibly_damaging(0.616) TCGA-BR-8361-01 19 54867847 54867847 C A LAIR1 Missense_Mutation p.R219M 0.36 deleterious(0.04) probably_damaging(0.962) TCGA-BR-8361-01 19 55143520 55143520 C A LILRB1 Missense_Mutation p.P165T 0.24 tolerated(0.07) benign(0.005) TCGA-BR-8361-01 19 55495082 55495082 C T NLRP2 Silent p.D672D 0.30 TCGA-BR-8361-01 19 55614860 55614860 G A PPP1R12C Silent p.G216G 0.27 TCGA-BR-8361-01 19 55677184 55677184 A G DNAAF3 Intron 0.30 TCGA-BR-8361-01 19 55858419 55858419 C T SUV420H2 Missense_Mutation p.R331W 0.42 deleterious_low_confidence(0) benign(0.425) TCGA-BR-8361-01 19 5590363 5590363 G A SAFB2 Silent p.D817D 0.64 TCGA-BR-8361-01 19 56114133 56114133 C T ZNF524 Missense_Mutation p.R219C 0.21 deleterious(0) probably_damaging(0.999) TCGA-BR-8361-01 19 56244545 56244545 A - NLRP9 Frame_Shift_Del p.S218Pfs*16 0.22 TCGA-BR-8361-01 19 56467067 56467067 G A NLRP8 Missense_Mutation p.S548N 0.40 tolerated(0.21) benign(0.119) TCGA-BR-8361-01 19 5668381 5668381 T - SAFB 3'Flank 0.33 TCGA-BR-8361-01 19 5679395 5679395 G C C19orf70 Missense_Mutation p.P74A 0.18 deleterious(0.01) benign(0.022) TCGA-BR-8361-01 19 57132704 57132704 G A ZNF71 Missense_Mutation p.V17I 0.24 tolerated(0.36) benign(0.103) TCGA-BR-8361-01 19 57326026 57326026 C A PEG3 Missense_Mutation p.A1262S 0.32 tolerated(0.31) benign(0.146) TCGA-BR-8361-01 19 57743478 57743478 G T AURKC Missense_Mutation p.R61L 0.21 deleterious(0) probably_damaging(0.982) TCGA-BR-8361-01 19 57802746 57802746 T - ZNF460 Frame_Shift_Del p.F280Lfs*184 0.27 TCGA-BR-8361-01 19 57863009 57863009 G A ZNF304 5'UTR 0.32 TCGA-BR-8361-01 19 58485726 58485726 C T C19orf18 Silent p.P25P 0.41 TCGA-BR-8361-01 19 58863520 58863520 C T A1BG Intron 0.22 TCGA-BR-8361-01 19 6007164 6007164 C T RFX2 Missense_Mutation p.E421K 0.09 tolerated(0.45) benign(0.379) TCGA-BR-8361-01 19 6433605 6433605 G - SLC25A41 Frame_Shift_Del p.Q34Nfs*44 0.29 TCGA-BR-8361-01 19 6454567 6454567 C T SLC25A23 Intron 0.36 TCGA-BR-8361-01 19 6454638 6454638 C T SLC25A23 Missense_Mutation p.G192S 0.38 deleterious(0) probably_damaging(1) TCGA-BR-8361-01 19 6459596 6459596 C - SLC25A23 Frame_Shift_Del p.G15Vfs*117 0.19 TCGA-BR-8361-01 19 7531846 7531846 G A ARHGEF18 Missense_Mutation p.V795I 0.35 tolerated(0.64) benign(0.002) TCGA-BR-8361-01 19 7707183 7707183 C T STXBP2 Missense_Mutation p.A253V 0.23 tolerated(0.09) possibly_damaging(0.483) TCGA-BR-8361-01 19 7986933 7986933 C T SNAPC2 Missense_Mutation p.A129V 0.25 deleterious(0) probably_damaging(0.967) TCGA-BR-8361-01 19 8171110 8171110 G A FBN3 Silent p.D1565D 0.41 TCGA-BR-8361-01 19 8657677 8657677 C T ADAMTS10 Silent p.T519T 0.29 TCGA-BR-8361-01 19 8808703 8808703 C T ACTL9 Missense_Mutation p.G117S 0.55 deleterious(0.02) probably_damaging(1) TCGA-BR-8361-01 19 8808765 8808765 G A ACTL9 Missense_Mutation p.T96M 0.39 tolerated(0.05) probably_damaging(0.968) TCGA-BR-8361-01 19 8969323 8969323 G A MUC16 Missense_Mutation p.P14341S 0.27 probably_damaging(0.969) TCGA-BR-8361-01 19 8993496 8993496 G A MUC16 Missense_Mutation p.R13865C 0.35 probably_damaging(0.969) TCGA-BR-8361-01 19 9271917 9271917 C T ZNF317 Silent p.C532C 0.25 TCGA-BR-8361-01 19 9362175 9362175 C T OR7E24 Silent p.I152I 0.16 TCGA-BR-8361-01 1 101194858 101194858 T G VCAM1 Missense_Mutation p.F375C 0.19 deleterious(0.01) probably_damaging(0.97) TCGA-BR-8361-01 1 10166513 10166513 C T UBE4B Silent p.L356L 0.28 TCGA-BR-8361-01 1 103352527 103352527 G A COL11A1 Missense_Mutation p.A1565V 0.34 unknown(0) TCGA-BR-8361-01 1 103364326 103364326 C - COL11A1 Frame_Shift_Del p.E1382Kfs*76 0.12 TCGA-BR-8361-01 1 10511575 10511575 C - CORT Frame_Shift_Del p.Q83Sfs*43 0.26 TCGA-BR-8361-01 1 10714551 10714551 C T CASZ1 Missense_Mutation p.R588H 0.37 deleterious(0) probably_damaging(0.999) TCGA-BR-8361-01 1 107950324 107950325 - T NTNG1 Frame_Shift_Ins p.G362Wfs*2 0.23 TCGA-BR-8361-01 1 109238368 109238368 G A PRPF38B Silent p.A107A 0.29 TCGA-BR-8361-01 1 109642959 109642959 C T TMEM167B 3'Flank 0.32 TCGA-BR-8361-01 1 109805496 109805496 G A CELSR2 Missense_Mutation p.R1538Q 0.34 tolerated(0.3) benign(0.027) TCGA-BR-8361-01 1 110198921 110198921 T C GSTM4 5'UTR 0.36 TCGA-BR-8361-01 1 110587676 110587676 C T STRIP1 Silent p.H464H 0.41 TCGA-BR-8361-01 1 111216807 111216807 G A KCNA3 Missense_Mutation p.R209W 0.07 deleterious(0) probably_damaging(0.992) TCGA-BR-8361-01 1 111217049 111217049 G A KCNA3 Missense_Mutation p.T128M 0.36 deleterious(0) probably_damaging(1) TCGA-BR-8361-01 1 11126756 11126756 C T EXOSC10 3'UTR 0.26 TCGA-BR-8361-01 1 111663273 111663273 T C DRAM2 Missense_Mutation p.T128A 0.25 tolerated(0.43) benign(0.047) TCGA-BR-8361-01 1 111772388 111772388 G A CHI3L2 Intron 0.21 TCGA-BR-8361-01 1 11273588 11273588 C T MTOR Silent p.T1051T 0.31 TCGA-BR-8361-01 1 11288885 11288885 C T MTOR Missense_Mutation p.R957Q 0.35 tolerated(0.47) probably_damaging(0.978) TCGA-BR-8361-01 1 114483980 114483980 T C HIPK1 Silent p.D325D 0.40 TCGA-BR-8361-01 1 117492145 117492145 A C PTGFRN Missense_Mutation p.K388N 0.30 deleterious(0.03) probably_damaging(0.948) TCGA-BR-8361-01 1 11888655 11888655 C T CLCN6 Silent p.N365N 0.09 TCGA-BR-8361-01 1 11894370 11894370 G A CLCN6 Missense_Mutation p.R535H 0.39 deleterious(0) probably_damaging(1) TCGA-BR-8361-01 1 11897527 11897527 C T CLCN6 Nonsense_Mutation p.R756* 0.44 TCGA-BR-8361-01 1 120480571 120480571 T - NOTCH2 Frame_Shift_Del p.A1083Qfs*25 0.27 TCGA-BR-8361-01 1 1275518 1275518 C A DVL1 Missense_Mutation p.S270I 0.31 deleterious(0) possibly_damaging(0.883) TCGA-BR-8361-01 1 1290695 1290695 G A MXRA8 Missense_Mutation p.T136I 0.18 deleterious(0) probably_damaging(0.99) TCGA-BR-8361-01 1 12920014 12920014 G A PRAMEF2 Missense_Mutation p.E252K 0.27 tolerated(0.29) benign(0.07) TCGA-BR-8361-01 1 144903085 144903085 G A PDE4DIP Missense_Mutation p.A936V 0.17 deleterious(0.01) probably_damaging(0.986) TCGA-BR-8361-01 1 145015939 145015939 G A RP11-326G21.1 5'Flank 0.07 TCGA-BR-8361-01 1 150484010 150484010 G - ECM1 Frame_Shift_Del p.E291Rfs*52 0.27 TCGA-BR-8361-01 1 150676776 150676776 T - HORMAD1 Frame_Shift_Del p.N283Tfs*12 0.38 TCGA-BR-8361-01 1 151239749 151239749 C A PSMD4 Missense_Mutation p.A355D 0.36 deleterious(0) probably_damaging(0.992) TCGA-BR-8361-01 1 151377819 151377819 T C POGZ Missense_Mutation p.H1231R 0.40 deleterious(0.01) probably_damaging(0.997) TCGA-BR-8361-01 1 151491487 151491487 T G CGN Silent p.A164A 0.05 TCGA-BR-8361-01 1 152188393 152188393 T C HRNR Silent p.S1904S 0.08 TCGA-BR-8361-01 1 152671618 152671618 C T LCE2A Missense_Mutation p.R81W 0.33 tolerated_low_confidence(0.13) unknown(0) TCGA-BR-8361-01 1 152749084 152749084 C T LCE1F Silent p.H79H 0.21 TCGA-BR-8361-01 1 152799957 152799957 C T LCE1A Silent p.C3C 0.20 TCGA-BR-8361-01 1 152884046 152884046 C T IVL 3'UTR 0.43 TCGA-BR-8361-01 1 153916623 153916623 G - DENND4B Frame_Shift_Del p.L77Wfs*222 0.29 TCGA-BR-8361-01 1 154201200 154201200 C T UBAP2L Missense_Mutation p.T93M 0.33 tolerated(0.05) unknown(0) TCGA-BR-8361-01 1 154987461 154987461 G A ZBTB7B Missense_Mutation p.A143T 0.13 deleterious(0) possibly_damaging(0.794) TCGA-BR-8361-01 1 155007180 155007180 T A DCST1 Missense_Mutation p.I80N 0.33 deleterious(0) benign(0.206) TCGA-BR-8361-01 1 155233110 155233110 G A CLK2 Missense_Mutation p.R466W 0.26 deleterious(0) probably_damaging(0.999) TCGA-BR-8361-01 1 155300301 155300301 G A RUSC1 Missense_Mutation p.R883H 0.28 deleterious(0.05) benign(0.104) TCGA-BR-8361-01 1 155630290 155630290 C - YY1AP1 Frame_Shift_Del p.V609Sfs*41 0.30 TCGA-BR-8361-01 1 155989860 155989860 G A SSR2 Silent p.Y33Y 0.31 TCGA-BR-8361-01 1 156264771 156264771 G A C1orf85 Silent p.L53L 0.40 TCGA-BR-8361-01 1 156498742 156498742 G A IQGAP3 Missense_Mutation p.R1513W 0.36 deleterious(0) possibly_damaging(0.893) TCGA-BR-8361-01 1 156642653 156642653 C A NES Nonsense_Mutation p.G443* 0.16 TCGA-BR-8361-01 1 156905984 156905984 C T ARHGEF11 Intron 0.33 TCGA-BR-8361-01 1 157062449 157062449 G T ETV3L Missense_Mutation p.P360T 0.24 deleterious_low_confidence(0) benign(0.255) TCGA-BR-8361-01 1 158058203 158058203 C - KIRREL Frame_Shift_Del p.L337Sfs*14 0.29 TCGA-BR-8361-01 1 158151369 158151369 G A CD1D Silent p.S62S 0.32 TCGA-BR-8361-01 1 158449951 158449951 T C OR10R2 Missense_Mutation p.F95S 0.32 deleterious(0) benign(0.266) TCGA-BR-8361-01 1 15986518 15986518 C T RSC1A1 Missense_Mutation p.A52V 0.33 tolerated(0.1) probably_damaging(0.909) TCGA-BR-8361-01 1 159922266 159922266 G A SLAMF9 Silent p.C150C 0.33 TCGA-BR-8361-01 1 160168836 160168837 - C CASQ1 Frame_Shift_Ins p.L328Pfs*11 0.25 TCGA-BR-8361-01 1 161049551 161049551 C T PVRL4 Missense_Mutation p.V90M 0.45 tolerated(0.07) probably_damaging(0.918) TCGA-BR-8361-01 1 161072141 161072141 G A PFDN2 Missense_Mutation p.R34W 0.24 deleterious(0) probably_damaging(0.999) TCGA-BR-8361-01 1 161167952 161167952 G A ADAMTS4 Missense_Mutation p.R156W 0.17 deleterious(0.03) probably_damaging(0.989) TCGA-BR-8361-01 1 161494851 161494851 G A HSPA6 Missense_Mutation p.A135T 0.29 deleterious_low_confidence(0.04) benign(0.132) TCGA-BR-8361-01 1 16260655 16260655 A - SPEN Frame_Shift_Del p.K2641Nfs*11 0.24 TCGA-BR-8361-01 1 162749984 162749984 G A DDR2 Missense_Mutation p.R839H 0.29 deleterious(0) probably_damaging(1) TCGA-BR-8361-01 1 16354587 16354587 G A CLCNKA Missense_Mutation p.R314Q 0.27 tolerated(0.19) benign(0.015) TCGA-BR-8361-01 1 16380184 16380184 T C CLCNKB Missense_Mutation p.L558P 0.33 deleterious(0) probably_damaging(0.994) TCGA-BR-8361-01 1 165414197 165414197 A G RXRG 5'UTR 0.19 TCGA-BR-8361-01 1 169347644 169347644 G A BLZF1 Missense_Mutation p.R182H 0.04 tolerated(0.1) benign(0.066) TCGA-BR-8361-01 1 16935131 16935131 G A NBPF1 5'UTR 0.07 TCGA-BR-8361-01 1 169790867 169790867 T - C1orf112 Frame_Shift_Del p.F252Lfs*51 0.27 TCGA-BR-8361-01 1 17331924 17331924 C T ATP13A2 Missense_Mutation p.R78Q 0.54 tolerated(0.7) benign(0.023) TCGA-BR-8361-01 1 173552688 173552688 A - SLC9C2 Frame_Shift_Del p.F199Lfs*19 0.29 TCGA-BR-8361-01 1 17380511 17380511 C G SDHB Missense_Mutation p.A2P 0.21 tolerated_low_confidence(0.22) possibly_damaging(0.475) TCGA-BR-8361-01 1 17410241 17410241 G A PADI2 Nonsense_Mutation p.R344* 0.35 TCGA-BR-8361-01 1 175048696 175048696 G A TNN Missense_Mutation p.V213M 0.36 deleterious(0.02) benign(0.248) TCGA-BR-8361-01 1 17603150 17603150 G A PADI3 Missense_Mutation p.D482N 0.24 deleterious(0.05) benign(0.02) TCGA-BR-8361-01 1 180063462 180063462 A - CEP350 Frame_Shift_Del p.K2743Sfs*12 0.25 TCGA-BR-8361-01 1 182571596 182571596 A G RGS16 Missense_Mutation p.L60P 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8361-01 1 183094604 183094605 - T LAMC1 Frame_Shift_Ins p.L908Ffs*13 0.21 TCGA-BR-8361-01 1 183604822 183604822 C A ARPC5 5'UTR 0.26 TCGA-BR-8361-01 1 183895311 183895311 G A RGL1 Missense_Mutation p.R766H 0.22 deleterious(0.03) probably_damaging(0.997) TCGA-BR-8361-01 1 184567582 184567582 A - C1orf21 Frame_Shift_Del p.I107Lfs*36 0.28 TCGA-BR-8361-01 1 186106744 186106744 A G HMCN1 Missense_Mutation p.K4566R 0.30 benign(0.057) TCGA-BR-8361-01 1 18809629 18809629 C T KLHDC7A Silent p.C718C 0.45 TCGA-BR-8361-01 1 19546113 19546113 G A EMC1 Nonsense_Mutation p.R918* 0.27 TCGA-BR-8361-01 1 196759285 196759285 T C CFHR3 Missense_Mutation p.Y242H 0.63 deleterious(0.01) possibly_damaging(0.881) TCGA-BR-8361-01 1 197071072 197071073 - A ASPM Frame_Shift_Ins p.V2437Cfs*14 0.23 TCGA-BR-8361-01 1 197073026 197073026 A G ASPM Silent p.Y1785Y 0.05 TCGA-BR-8361-01 1 200017448 200017448 C T NR5A2 Silent p.P204P 0.27 TCGA-BR-8361-01 1 200567386 200567387 - C KIF14 Frame_Shift_Ins p.V843Gfs*5 0.23 TCGA-BR-8361-01 1 200776602 200776602 T - CAMSAP2 Frame_Shift_Del p.Q169Kfs*17 0.25 TCGA-BR-8361-01 1 201184737 201184737 G A IGFN1 Silent p.P3022P 0.31 TCGA-BR-8361-01 1 201751434 201751434 C T NAV1 Silent p.R598R 0.29 TCGA-BR-8361-01 1 202276051 202276051 A G LGR6 Missense_Mutation p.S398G 0.28 tolerated(0.36) benign(0.006) TCGA-BR-8361-01 1 202300886 202300886 A T UBE2T 3'UTR 0.33 TCGA-BR-8361-01 1 202462365 202462365 G - PPP1R12B Frame_Shift_Del p.E689Rfs*33 0.24 TCGA-BR-8361-01 1 203044748 203044748 G A PPFIA4 Missense_Mutation p.R640H 0.32 deleterious(0.01) possibly_damaging(0.781) TCGA-BR-8361-01 1 203192711 203192711 C T CHIT1 Missense_Mutation p.S131N 0.27 tolerated(0.31) benign(0) TCGA-BR-8361-01 1 20412716 20412716 G A PLA2G5 Missense_Mutation p.D61N 0.38 deleterious(0) probably_damaging(0.999) TCGA-BR-8361-01 1 204228411 204228411 C - PLEKHA6 Frame_Shift_Del p.V328Yfs*172 0.22 TCGA-BR-8361-01 1 205899107 205899107 G A SLC26A9 Silent p.A210A 0.33 TCGA-BR-8361-01 1 206331126 206331126 T C CTSE Missense_Mutation p.F378L 0.35 deleterious(0) possibly_damaging(0.854) TCGA-BR-8361-01 1 206821945 206821945 C T DYRK3 Missense_Mutation p.R468C 0.04 deleterious(0) probably_damaging(0.999) TCGA-BR-8361-01 1 210016834 210016834 G A DIEXF Missense_Mutation p.R607H 0.35 deleterious(0) benign(0.223) TCGA-BR-8361-01 1 21053506 21053506 G A SH2D5 Silent p.S77S 0.40 TCGA-BR-8361-01 1 211923213 211923213 G A LPGAT1 3'UTR 0.28 TCGA-BR-8361-01 1 214820743 214820743 A C CENPF Missense_Mutation p.K2610N 0.25 possibly_damaging(0.647) TCGA-BR-8361-01 1 216496917 216496917 C T USH2A Silent p.T483T 0.22 TCGA-BR-8361-01 1 216498890 216498890 T C USH2A Silent p.S300S 0.37 TCGA-BR-8361-01 1 221879616 221879616 T C DUSP10 Missense_Mutation p.Q335R 0.37 tolerated(1) benign(0) TCGA-BR-8361-01 1 226483628 226483628 C T LIN9 Missense_Mutation p.R76Q 0.38 tolerated(0.06) benign(0.267) TCGA-BR-8361-01 1 228290071 228290071 G A C1orf35 Silent p.G129G 0.33 TCGA-BR-8361-01 1 228294543 228294543 G A MRPL55 Missense_Mutation p.S138L 0.45 tolerated(0.31) benign(0.073) TCGA-BR-8361-01 1 228345732 228345732 G A GJC2 Silent p.S91S 0.69 TCGA-BR-8361-01 1 228346017 228346017 C T GJC2 Silent p.G186G 0.42 TCGA-BR-8361-01 1 228509183 228509183 G A OBSCN Missense_Mutation p.A5838T 0.37 probably_damaging(0.999) TCGA-BR-8361-01 1 229460857 229460857 A - CCSAP 3'UTR 0.32 TCGA-BR-8361-01 1 229635470 229635470 C T NUP133 Silent p.S203S 0.29 TCGA-BR-8361-01 1 229635528 229635528 A G NUP133 Missense_Mutation p.I184T 0.30 deleterious(0.01) benign(0.092) TCGA-BR-8361-01 1 231954073 231954073 A G DISC1 Splice_Site p.X598_splice 0.23 TCGA-BR-8361-01 1 23418572 23418572 A G LUZP1 Missense_Mutation p.M728T 0.30 tolerated(0.32) benign(0.001) TCGA-BR-8361-01 1 235964219 235964220 - A LYST Frame_Shift_Ins p.L1297Ffs*5 0.25 TCGA-BR-8361-01 1 235966262 235966264 CTT - LYST In_Frame_Del p.E1219del 0.21 TCGA-BR-8361-01 1 236189268 236189268 C T NID1 Missense_Mutation p.V638M 0.34 deleterious(0.03) possibly_damaging(0.568) TCGA-BR-8361-01 1 23637497 23637497 C T HNRNPR Missense_Mutation p.R454H 0.26 tolerated(0.24) unknown(0) TCGA-BR-8361-01 1 237001790 237001790 T C MTR Missense_Mutation p.V469A 0.27 deleterious(0.01) probably_damaging(1) TCGA-BR-8361-01 1 237919622 237919622 A G RYR2 Missense_Mutation p.Q3727R 0.20 possibly_damaging(0.904) TCGA-BR-8361-01 1 240255580 240255580 C T FMN2 Silent p.G57G 0.44 TCGA-BR-8361-01 1 241850767 241850767 A - WDR64 Frame_Shift_Del p.R273Gfs*9 0.30 TCGA-BR-8361-01 1 243480061 243480061 A G SDCCAG8 Missense_Mutation p.R312G 0.26 deleterious(0) probably_damaging(1) TCGA-BR-8361-01 1 245850088 245850088 C T KIF26B Missense_Mutation p.A1268V 0.44 tolerated(0.2) unknown(0) TCGA-BR-8361-01 1 247752385 247752385 G A OR2G2 Missense_Mutation p.G242R 0.37 deleterious(0.03) benign(0.177) TCGA-BR-8361-01 1 248512486 248512486 G A OR14C36 Missense_Mutation p.R137Q 0.28 tolerated(0.43) benign(0.024) TCGA-BR-8361-01 1 24995906 24995906 C T SRRM1 Missense_Mutation p.P678S 0.24 unknown(0) TCGA-BR-8361-01 1 25687191 25687191 C A TMEM50A Missense_Mutation p.Q157K 0.05 tolerated(0.42) benign(0.338) TCGA-BR-8361-01 1 25785241 25785241 G A TMEM57 Missense_Mutation p.A338T 0.24 tolerated(0.58) benign(0.003) TCGA-BR-8361-01 1 27088682 27088682 C - ARID1A Frame_Shift_Del p.Q766Sfs*67 0.25 TCGA-BR-8361-01 1 27106699 27106699 T C ARID1A Missense_Mutation p.S2104P 0.31 benign(0.055) TCGA-BR-8361-01 1 27741399 27741399 C T WASF2 Missense_Mutation p.R199H 0.25 deleterious(0) unknown(0) TCGA-BR-8361-01 1 28476590 28476590 G A PTAFR Missense_Mutation p.R315W 0.39 deleterious(0) probably_damaging(0.963) TCGA-BR-8361-01 1 28661525 28661526 - A MED18 3'UTR 0.23 TCGA-BR-8361-01 1 31194315 31194315 G A MATN1 Silent p.F126F 0.33 TCGA-BR-8361-01 1 32566220 32566220 A G TMEM39B Intron 0.36 TCGA-BR-8361-01 1 32745586 32745586 G A LCK Missense_Mutation p.A396T 0.26 deleterious(0.03) benign(0.096) TCGA-BR-8361-01 1 33741738 33741738 C - ZNF362 Frame_Shift_Del p.P27Lfs*14 0.25 TCGA-BR-8361-01 1 33772942 33772942 C T A3GALT2 Missense_Mutation p.V150M 0.43 tolerated(0.07) benign(0.235) TCGA-BR-8361-01 1 35653617 35653617 C T SFPQ Missense_Mutation p.R591H 0.31 tolerated(0.07) possibly_damaging(0.84) TCGA-BR-8361-01 1 36229901 36229901 A T CLSPN Missense_Mutation p.I183N 0.32 deleterious(0.01) possibly_damaging(0.8) TCGA-BR-8361-01 1 37337827 37337827 C T GRIK3 Missense_Mutation p.D232N 0.26 deleterious(0) probably_damaging(1) TCGA-BR-8361-01 1 3768978 3768978 C T CEP104 5'UTR 0.31 TCGA-BR-8361-01 1 3809468 3809468 C T C1orf174 Silent p.T36T 0.43 TCGA-BR-8361-01 1 38281160 38281160 G A MTF1 Missense_Mutation p.A637V 0.36 deleterious(0.04) probably_damaging(0.985) TCGA-BR-8361-01 1 39934365 39934365 G T MACF1 Missense_Mutation p.A5219S 0.35 possibly_damaging(0.686) TCGA-BR-8361-01 1 4014775 4014775 G A RP13-614K11.1 RNA 0.40 TCGA-BR-8361-01 1 41486058 41486058 G T SLFNL1 Missense_Mutation p.A92D 0.24 deleterious(0) probably_damaging(0.952) TCGA-BR-8361-01 1 42048868 42048868 G - HIVEP3 Frame_Shift_Del p.P534Lfs*5 0.27 TCGA-BR-8361-01 1 42645437 42645437 G A FOXJ3 Missense_Mutation p.R605C 0.23 deleterious(0) probably_damaging(0.99) TCGA-BR-8361-01 1 43108274 43108274 A C CCDC30 Missense_Mutation p.Q590P 0.32 deleterious(0) probably_damaging(0.979) TCGA-BR-8361-01 1 43392779 43392779 C - SLC2A1 Frame_Shift_Del p.G471Efs*37 0.27 TCGA-BR-8361-01 1 45115379 45115379 C T RNF220 Missense_Mutation p.R498W 0.31 deleterious(0) probably_damaging(0.994) TCGA-BR-8361-01 1 45407191 45407191 C T EIF2B3 Silent p.G147G 0.35 TCGA-BR-8361-01 1 46033642 46033643 TC - AKR1A1 Intron 0.30 TCGA-BR-8361-01 1 46751470 46751470 G A LRRC41 Silent p.G353G 0.41 TCGA-BR-8361-01 1 47078721 47078721 G A MOB3C Silent p.A143A 0.29 TCGA-BR-8361-01 1 47407043 47407043 C T CYP4A11 Silent p.A21A 0.26 TCGA-BR-8361-01 1 4832466 4832466 G T AJAP1 Silent p.T348T 0.17 TCGA-BR-8361-01 1 52253026 52253026 C T OSBPL9 Missense_Mutation p.L678F 0.37 deleterious(0.01) probably_damaging(0.911) TCGA-BR-8361-01 1 52272466 52272466 C T NRD1 Missense_Mutation p.A772T 0.09 deleterious(0) probably_damaging(0.928) TCGA-BR-8361-01 1 53555611 53555612 - G SLC1A7 Intron 0.25 TCGA-BR-8361-01 1 54360030 54360030 T C DIO1 Silent p.G49G 0.22 TCGA-BR-8361-01 1 60456436 60456436 C A C1orf87 Missense_Mutation p.S517I 0.32 deleterious(0) probably_damaging(0.998) TCGA-BR-8361-01 1 64709906 64709906 T - UBE2U 3'UTR 0.28 TCGA-BR-8361-01 1 6488423 6488423 C T ESPN Silent p.Y144Y 0.19 TCGA-BR-8361-01 1 6512002 6512002 C A ESPN Missense_Mutation p.P724Q 0.21 deleterious(0.02) probably_damaging(1) TCGA-BR-8361-01 1 65895579 65895579 G A LEPROT Missense_Mutation p.A43T 0.34 deleterious(0.04) benign(0.005) TCGA-BR-8361-01 1 66099015 66099015 T C LEPR Intron 0.56 TCGA-BR-8361-01 1 67412110 67412110 C T MIER1 Intron 0.27 TCGA-BR-8361-01 1 67561960 67561960 G A C1orf141 Missense_Mutation p.L131F 0.12 tolerated(0.38) benign(0.004) TCGA-BR-8361-01 1 70728395 70728395 G A ANKRD13C 3'UTR 0.28 TCGA-BR-8361-01 1 75072545 75072545 G A C1orf173 Missense_Mutation p.P410L 0.20 tolerated(0.27) benign(0.131) TCGA-BR-8361-01 1 76397757 76397757 C T ASB17 Missense_Mutation p.V74M 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.861) TCGA-BR-8361-01 1 85666150 85666150 C - SYDE2 Frame_Shift_Del p.G177Afs*10 0.18 TCGA-BR-8361-01 1 86965770 86965770 T - CLCA1 3'UTR 0.31 TCGA-BR-8361-01 1 87036905 87036905 A C CLCA4 Missense_Mutation p.D443A 0.36 tolerated(0.98) benign(0.028) TCGA-BR-8361-01 1 89323037 89323037 A G GTF2B Silent p.C223C 0.29 TCGA-BR-8361-01 1 90400706 90400707 - A LRRC8D Frame_Shift_Ins p.I695Nfs*21 0.14 TCGA-BR-8361-01 1 91403294 91403296 CTT - ZNF644 In_Frame_Del p.E1145del 0.25 TCGA-BR-8361-01 1 92185008 92185008 G A TGFBR3 Missense_Mutation p.S476L 0.29 tolerated(0.48) benign(0.009) TCGA-BR-8361-01 1 99156668 99156668 T A SNX7 Missense_Mutation p.V134D 0.31 deleterious(0) probably_damaging(1) TCGA-BR-8361-01 20 13756530 13756530 G A ESF1 Missense_Mutation p.R342C 0.25 deleterious(0.01) benign(0.006) TCGA-BR-8361-01 20 13830886 13830886 A G SEL1L2 Missense_Mutation p.V520A 0.30 deleterious_low_confidence(0.03) benign(0.021) TCGA-BR-8361-01 20 14306094 14306094 T - FLRT3 3'UTR 0.20 TCGA-BR-8361-01 20 18396042 18396043 - C DZANK1 Frame_Shift_Ins p.T336Dfs*36 0.27 TCGA-BR-8361-01 20 20616123 20616123 T - RALGAPA2 Frame_Shift_Del p.K315Sfs*3 0.26 TCGA-BR-8361-01 20 20620462 20620462 A - RALGAPA2 Frame_Shift_Del p.L212Ffs*5 0.20 TCGA-BR-8361-01 20 23028480 23028480 G A THBD Silent p.C554C 0.33 TCGA-BR-8361-01 20 2411645 2411645 G A TGM6 Missense_Mutation p.G647S 0.35 deleterious(0.01) probably_damaging(1) TCGA-BR-8361-01 20 2847077 2847077 G A VPS16 Missense_Mutation p.D793N 0.34 tolerated(0.57) benign(0.02) TCGA-BR-8361-01 20 30602726 30602726 G A CCM2L Missense_Mutation p.R17Q 0.21 deleterious(0.01) benign(0.236) TCGA-BR-8361-01 20 30919102 30919102 C T KIF3B Missense_Mutation p.R742W 0.26 deleterious(0) possibly_damaging(0.689) TCGA-BR-8361-01 20 3145097 3145097 C T LZTS3 3'UTR 0.32 TCGA-BR-8361-01 20 3145148 3145150 CTT - LZTS3 In_Frame_Del p.K658del 0.43 TCGA-BR-8361-01 20 3209805 3209805 G A SLC4A11 Silent p.L695L 0.23 TCGA-BR-8361-01 20 32232466 32232466 C T CBFA2T2 3'UTR 0.36 TCGA-BR-8361-01 20 33147545 33147545 G A MAP1LC3A Missense_Mutation p.R74H 0.27 deleterious(0) benign(0.025) TCGA-BR-8361-01 20 33567228 33567228 G A MYH7B Missense_Mutation p.A85T 0.30 probably_damaging(0.952) TCGA-BR-8361-01 20 33582020 33582020 T A MYH7B Missense_Mutation p.L881H 0.31 probably_damaging(1) TCGA-BR-8361-01 20 33632505 33632505 C T TRPC4AP Missense_Mutation p.R223Q 0.31 tolerated(1) benign(0.002) TCGA-BR-8361-01 20 34136287 34136287 C T ERGIC3 Missense_Mutation p.R163W 0.30 deleterious(0.01) benign(0.1) TCGA-BR-8361-01 20 34218842 34218842 C T CPNE1 Missense_Mutation p.V331M 0.33 deleterious(0.02) probably_damaging(0.984) TCGA-BR-8361-01 20 34240845 34240845 G A RBM12 Silent p.G800G 0.29 TCGA-BR-8361-01 20 36627620 36627620 G A TTI1 Silent p.D921D 0.27 TCGA-BR-8361-01 20 37076727 37076727 G A SNHG11 Intron 0.33 TCGA-BR-8361-01 20 37383681 37383681 G A ACTR5 Missense_Mutation p.G286D 0.31 tolerated(0.09) probably_damaging(0.941) TCGA-BR-8361-01 20 3739228 3739228 C T C20orf27 Silent p.S64S 0.27 TCGA-BR-8361-01 20 377077 377077 C T TRIB3 Missense_Mutation p.R274C 0.22 deleterious(0.04) probably_damaging(1) TCGA-BR-8361-01 20 3782935 3782935 G A CDC25B Missense_Mutation p.R369H 0.19 tolerated(0.05) probably_damaging(0.922) TCGA-BR-8361-01 20 40118601 40118601 G T CHD6 Missense_Mutation p.F499L 0.35 tolerated(0.06) possibly_damaging(0.903) TCGA-BR-8361-01 20 40739003 40739003 G - PTPRT Frame_Shift_Del p.P1075Rfs*6 0.20 TCGA-BR-8361-01 20 40980850 40980850 G A PTPRT Missense_Mutation p.R546W 0.29 tolerated(0.08) possibly_damaging(0.761) TCGA-BR-8361-01 20 42935750 42935750 C T FITM2 Missense_Mutation p.A102T 0.27 deleterious(0.03) possibly_damaging(0.588) TCGA-BR-8361-01 20 43933214 43933214 G A MATN4 Silent p.R99R 0.29 TCGA-BR-8361-01 20 44483882 44483882 C T ACOT8 Missense_Mutation p.V60M 0.24 deleterious(0.04) possibly_damaging(0.647) TCGA-BR-8361-01 20 46276031 46276031 G A NCOA3 Missense_Mutation p.R1156Q 0.28 deleterious(0) probably_damaging(0.982) TCGA-BR-8361-01 20 47628620 47628620 G A ARFGEF2 Missense_Mutation p.R1306Q 0.21 tolerated(1) benign(0) TCGA-BR-8361-01 20 47863720 47863720 A - ZNFX1 3'UTR 0.30 TCGA-BR-8361-01 20 47991448 47991448 G C KCNB1 Missense_Mutation p.L217V 0.10 tolerated(0.85) benign(0) TCGA-BR-8361-01 20 48744613 48744613 C T TMEM189-UBE2V1 Missense_Mutation p.R197H 0.37 tolerated_low_confidence(0.19) benign(0) TCGA-BR-8361-01 20 49203727 49203727 A - FAM65C 3'UTR 0.45 TCGA-BR-8361-01 20 50092134 50092134 G A NFATC2 Missense_Mutation p.R466W 0.29 deleterious(0) probably_damaging(1) TCGA-BR-8361-01 20 50701174 50701174 G A ZFP64 Silent p.S620S 0.48 TCGA-BR-8361-01 20 50705172 50705172 C T ZFP64 Silent p.P132P 0.36 TCGA-BR-8361-01 20 52198731 52198731 G A ZNF217 Missense_Mutation p.S212F 0.31 deleterious(0.01) possibly_damaging(0.713) TCGA-BR-8361-01 20 56136615 56136617 GAG - PCK1 In_Frame_Del p.E52del 0.30 TCGA-BR-8361-01 20 5903119 5903119 A G CHGB Missense_Mutation p.E110G 0.27 tolerated(0.08) benign(0.006) TCGA-BR-8361-01 20 60419875 60419875 A G CDH4 Missense_Mutation p.Y243C 0.32 deleterious(0) probably_damaging(0.998) TCGA-BR-8361-01 20 60773703 60773703 C T MTG2 Missense_Mutation p.T161M 0.29 deleterious(0) probably_damaging(1) TCGA-BR-8361-01 20 61488942 61488942 C T TCFL5 Missense_Mutation p.R348H 0.43 tolerated(0.44) benign(0.021) TCGA-BR-8361-01 20 61512859 61512859 G A DIDO1 Silent p.N1483N 0.28 TCGA-BR-8361-01 20 62292794 62292794 G A RTEL1 Silent p.P82P 0.24 TCGA-BR-8361-01 20 7967944 7967944 A - TMX4 Frame_Shift_Del p.F202Lfs*8 0.17 TCGA-BR-8361-01 20 8639248 8639248 G A PLCB1 Silent p.Q253Q 0.30 TCGA-BR-8361-01 21 15893518 15893518 C T SAMSN1 Missense_Mutation p.D96N 0.57 tolerated(0.07) probably_damaging(1) TCGA-BR-8361-01 21 22370891 22370891 C A NCAM2 Missense_Mutation p.L4I 0.39 tolerated(1) unknown(0) TCGA-BR-8361-01 21 22804504 22804504 G A NCAM2 Silent p.P519P 0.33 TCGA-BR-8361-01 21 28296395 28296395 G A ADAMTS5 Nonsense_Mutation p.Q924* 0.47 TCGA-BR-8361-01 21 34922887 34922887 G A SON Silent p.S450S 0.56 TCGA-BR-8361-01 21 37444855 37444855 G T CBR1 Missense_Mutation p.G170V 0.43 tolerated(0.09) benign(0.01) TCGA-BR-8361-01 21 43166800 43166800 C - RIPK4 Frame_Shift_Del p.D269Ifs*26 0.31 TCGA-BR-8361-01 21 45107700 45107700 C T RRP1B Missense_Mutation p.A482V 0.24 tolerated(0.97) benign(0.004) TCGA-BR-8361-01 21 45810858 45810858 C T TRPM2 Missense_Mutation p.R464C 0.34 deleterious(0) probably_damaging(1) TCGA-BR-8361-01 21 46703387 46703387 C - POFUT2 Frame_Shift_Del p.W147Gfs*42 0.19 TCGA-BR-8361-01 21 47545966 47545966 C T COL6A2 Missense_Mutation p.A746V 0.38 tolerated(0.58) possibly_damaging(0.692) TCGA-BR-8361-01 21 47552362 47552362 A G COL6A2 Missense_Mutation p.T986A 0.30 tolerated(0.96) benign(0.002) TCGA-BR-8361-01 21 47860946 47860946 G A PCNT Missense_Mutation p.R3191H 0.20 probably_damaging(0.954) TCGA-BR-8361-01 21 48080764 48080764 T - PRMT2 Frame_Shift_Del p.S286Qfs*9 0.25 TCGA-BR-8361-01 22 17072083 17072083 G A CCT8L2 Missense_Mutation p.A453V 0.24 deleterious(0) probably_damaging(1) TCGA-BR-8361-01 22 18069980 18069980 G A SLC25A18 Missense_Mutation p.R163H 0.30 deleterious(0.04) benign(0.064) TCGA-BR-8361-01 22 18082820 18082820 G A ATP6V1E1 Silent p.C136C 0.32 TCGA-BR-8361-01 22 18653568 18653568 C T USP18 Nonsense_Mutation p.R258* 0.24 TCGA-BR-8361-01 22 19028754 19028754 C T DGCR2 Missense_Mutation p.G405R 0.30 deleterious(0.02) benign(0.02) TCGA-BR-8361-01 22 20720976 20720976 G A USP41 Nonsense_Mutation p.R258* 0.09 TCGA-BR-8361-01 22 22599386 22599386 G A VPREB1 Silent p.Q25Q 0.27 TCGA-BR-8361-01 22 22890686 22890686 G - PRAME Frame_Shift_Del p.L445Wfs*81 0.24 TCGA-BR-8361-01 22 22990124 22990124 C T GGTLC2 Silent p.I190I 0.33 TCGA-BR-8361-01 22 23029667 23029667 C T IGLV3-25 Missense_Mutation p.T90M 0.29 deleterious(0) probably_damaging(0.98) TCGA-BR-8361-01 22 23090202 23090202 A - IGLV3-16 Frame_Shift_Del p.K49Nfs*17 0.23 TCGA-BR-8361-01 22 23615883 23615883 C T BCR Silent p.R679R 0.19 TCGA-BR-8361-01 22 24583691 24583691 C T SUSD2 Silent p.L682L 0.52 TCGA-BR-8361-01 22 26118481 26118481 G A ADRBK2 3'UTR 0.32 TCGA-BR-8361-01 22 26286756 26286756 C T MYO18B Missense_Mutation p.R1450C 0.26 deleterious(0) probably_damaging(0.969) TCGA-BR-8361-01 22 26423244 26423244 G A MYO18B Missense_Mutation p.R2435H 0.36 deleterious(0.02) benign(0.057) TCGA-BR-8361-01 22 26423522 26423522 C G MYO18B Missense_Mutation p.P2528A 0.27 deleterious(0) probably_damaging(1) TCGA-BR-8361-01 22 26902876 26902876 C T TFIP11 Silent p.A76A 0.34 TCGA-BR-8361-01 22 29750665 29750665 G A AP1B1 Silent p.R304R 0.18 TCGA-BR-8361-01 22 30210714 30210714 C T ASCC2 Missense_Mutation p.G218R 0.38 deleterious(0.03) benign(0.014) TCGA-BR-8361-01 22 30950938 30950938 C T GAL3ST1 3'UTR 0.30 TCGA-BR-8361-01 22 31535952 31535952 T A PLA2G3 Missense_Mutation p.K130M 0.11 deleterious(0.04) possibly_damaging(0.547) TCGA-BR-8361-01 22 31731813 31731813 G A PATZ1 Missense_Mutation p.R458C 0.36 deleterious(0.02) benign(0.107) TCGA-BR-8361-01 22 31957338 31957338 C T SFI1 Missense_Mutation p.A242V 0.29 tolerated(0.15) benign(0.269) TCGA-BR-8361-01 22 32011096 32011096 G A SFI1 Missense_Mutation p.R1044Q 0.46 tolerated(0.38) benign(0.017) TCGA-BR-8361-01 22 32302481 32302481 T C DEPDC5 Nonstop_Mutation p.*1595Rext*12 0.29 TCGA-BR-8361-01 22 33712138 33712138 G A LARGE Missense_Mutation p.H462Y 0.39 deleterious(0.04) benign(0.438) TCGA-BR-8361-01 22 36718564 36718564 G A MYH9 Silent p.G205G 0.33 TCGA-BR-8361-01 22 37603075 37603075 C T SSTR3 Silent p.T256T 0.32 TCGA-BR-8361-01 22 37964270 37964270 C A CDC42EP1 Missense_Mutation p.L207I 0.24 deleterious(0.01) unknown(0) TCGA-BR-8361-01 22 38470374 38470374 C T PICK1 Missense_Mutation p.R299C 0.16 deleterious(0) probably_damaging(0.995) TCGA-BR-8361-01 22 38890734 38890734 C T DDX17 Missense_Mutation p.R372H 0.27 tolerated(0.24) benign(0.013) TCGA-BR-8361-01 22 39085018 39085018 C T JOSD1 Missense_Mutation p.R144Q 0.42 deleterious(0.02) possibly_damaging(0.604) TCGA-BR-8361-01 22 39966799 39966799 C A CACNA1I Silent p.A14A 0.48 TCGA-BR-8361-01 22 39996631 39996631 G A CACNA1I Missense_Mutation p.R152H 0.28 deleterious(0) probably_damaging(0.966) TCGA-BR-8361-01 22 40661673 40661673 C G TNRC6B Missense_Mutation p.T480R 0.28 tolerated(0.05) benign(0.369) TCGA-BR-8361-01 22 41620173 41620173 C T L3MBTL2 Silent p.D364D 0.19 TCGA-BR-8361-01 22 41626193 41626193 A G L3MBTL2 Missense_Mutation p.K686E 0.29 tolerated_low_confidence(1) benign(0) TCGA-BR-8361-01 22 41923392 41923392 C T ACO2 Missense_Mutation p.A685V 0.21 tolerated_low_confidence(0.06) benign(0.03) TCGA-BR-8361-01 22 42059831 42059831 G A XRCC6 3'UTR 0.29 TCGA-BR-8361-01 22 42423145 42423145 C T WBP2NL Missense_Mutation p.A297V 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.483) TCGA-BR-8361-01 22 42463223 42463223 G A NAGA Silent p.G132G 0.36 TCGA-BR-8361-01 22 42538749 42538749 G A NDUFA6-AS1 3'Flank 0.31 TCGA-BR-8361-01 22 42972066 42972066 G A SERHL2 3'Flank 0.19 TCGA-BR-8361-01 22 44602226 44602226 C G PARVG Missense_Mutation p.L306V 0.18 deleterious(0.02) possibly_damaging(0.479) TCGA-BR-8361-01 22 45728354 45728354 T C FAM118A Missense_Mutation p.C234R 0.33 deleterious(0) probably_damaging(0.974) TCGA-BR-8361-01 22 45959041 45959041 C T FBLN1 Intron 0.24 TCGA-BR-8361-01 2 101009849 101009849 G A CHST10 Missense_Mutation p.P310L 0.24 tolerated(0.11) benign(0.02) TCGA-BR-8361-01 2 101924856 101924856 G A RNF149 Silent p.G65G 0.22 TCGA-BR-8361-01 2 105858508 105858508 A G GPR45 Missense_Mutation p.M65V 0.31 deleterious(0) possibly_damaging(0.864) TCGA-BR-8361-01 2 105859310 105859310 G A GPR45 Missense_Mutation p.R332H 0.36 tolerated(0.11) probably_damaging(0.909) TCGA-BR-8361-01 2 106710415 106710415 A - UXS1 3'UTR 0.44 TCGA-BR-8361-01 2 10908853 10908853 G A ATP6V1C2 Silent p.A129A 0.28 TCGA-BR-8361-01 2 109389034 109389034 G A RANBP2 Missense_Mutation p.A2704T 0.36 tolerated(0.49) benign(0.005) TCGA-BR-8361-01 2 113832828 113832828 G A IL1F10 Missense_Mutation p.A116T 0.10 deleterious(0.03) possibly_damaging(0.817) TCGA-BR-8361-01 2 11750856 11750856 C T GREB1 Silent p.L903L 0.30 TCGA-BR-8361-01 2 125504943 125504943 G A CNTNAP5 Missense_Mutation p.D738N 0.27 deleterious(0.01) possibly_damaging(0.801) TCGA-BR-8361-01 2 128044555 128044555 T C ERCC3 Missense_Mutation p.T356A 0.40 deleterious(0) probably_damaging(0.988) TCGA-BR-8361-01 2 128177458 128177459 - G PROC Intron 0.24 TCGA-BR-8361-01 2 128471514 128471514 C A WDR33 Missense_Mutation p.G984V 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.697) TCGA-BR-8361-01 2 132021676 132021676 G A POTEE Missense_Mutation p.R883Q 0.27 deleterious_low_confidence(0.02) probably_damaging(0.935) TCGA-BR-8361-01 2 132238309 132238309 C T TUBA3D Missense_Mutation p.P348L 0.37 deleterious_low_confidence(0) probably_damaging(0.941) TCGA-BR-8361-01 2 136567017 136567017 C T LCT Missense_Mutation p.R967Q 0.32 tolerated(0.13) benign(0.168) TCGA-BR-8361-01 2 137990635 137990635 T C THSD7B Silent p.C694C 0.38 TCGA-BR-8361-01 2 141079561 141079561 T C LRP1B Missense_Mutation p.N4204S 0.30 benign(0.292) TCGA-BR-8361-01 2 141457908 141457908 C T LRP1B Missense_Mutation p.G2237D 0.30 probably_damaging(0.931) TCGA-BR-8361-01 2 141609279 141609279 A T LRP1B Missense_Mutation p.S1551R 0.12 benign(0) TCGA-BR-8361-01 2 143685243 143685243 T C KYNU Silent p.H102H 0.34 TCGA-BR-8361-01 2 144903180 144903180 C T GTDC1 Silent p.Q102Q 0.23 TCGA-BR-8361-01 2 149861972 149861973 - A KIF5C Frame_Shift_Ins p.S816Kfs*8 0.23 TCGA-BR-8361-01 2 152500609 152500609 C T NEB Missense_Mutation p.G2560D 0.25 probably_damaging(1) TCGA-BR-8361-01 2 157182695 157182695 A G NR4A2 Missense_Mutation p.F503L 0.39 tolerated(0.25) benign(0.068) TCGA-BR-8361-01 2 159077217 159077217 T - CCDC148 Frame_Shift_Del p.K420Nfs*15 0.21 TCGA-BR-8361-01 2 163228392 163228392 C A KCNH7 Nonsense_Mutation p.G1180* 0.33 TCGA-BR-8361-01 2 1652304 1652304 C T PXDN Missense_Mutation p.R1083Q 0.30 deleterious(0.03) probably_damaging(0.969) TCGA-BR-8361-01 2 165946887 165946887 T A SCN3A Missense_Mutation p.N1926Y 0.36 tolerated(0.18) benign(0.076) TCGA-BR-8361-01 2 166171996 166171996 G A SCN2A Missense_Mutation p.A467T 0.29 tolerated(0.29) benign(0.019) TCGA-BR-8361-01 2 166536278 166536278 C A CSRNP3 3'UTR 0.33 TCGA-BR-8361-01 2 167168191 167168191 G A SCN9A Missense_Mutation p.R26C 0.34 deleterious(0.03) benign(0.433) TCGA-BR-8361-01 2 169836427 169836427 G A ABCB11 Silent p.A382A 0.37 TCGA-BR-8361-01 2 170493494 170493494 C T PPIG Nonsense_Mutation p.R576* 0.30 TCGA-BR-8361-01 2 172195839 172195839 T - METTL8 Frame_Shift_Del p.N154Ifs*23 0.28 TCGA-BR-8361-01 2 176948546 176948546 T C EVX2 5'UTR 0.25 TCGA-BR-8361-01 2 17699325 17699326 - G RAD51AP2 Frame_Shift_Ins p.S120Lfs*5 0.28 TCGA-BR-8361-01 2 178416457 178416457 T G TTC30B Missense_Mutation p.E345D 0.04 deleterious(0.01) benign(0.325) TCGA-BR-8361-01 2 178481375 178481376 AA - TTC30A 3'UTR 0.28 TCGA-BR-8361-01 2 178986024 178986024 T - RBM45 Frame_Shift_Del p.F265Lfs*3 0.16 TCGA-BR-8361-01 2 179320767 179320767 T C DFNB59 Silent p.R146R 0.15 TCGA-BR-8361-01 2 179407141 179407141 G A TTN Silent p.L32448L 0.19 TCGA-BR-8361-01 2 179523455 179523455 T - TTN Frame_Shift_Del p.K12507Sfs*440 0.09 TCGA-BR-8361-01 2 179612351 179612351 G T TTN Intron 0.27 TCGA-BR-8361-01 2 17997882 17997882 G A MSGN1 Missense_Mutation p.A33T 0.30 tolerated(0.53) benign(0.001) TCGA-BR-8361-01 2 182468728 182468728 C T CERKL Missense_Mutation p.R106H 0.44 deleterious(0.04) probably_damaging(0.999) TCGA-BR-8361-01 2 187693320 187693320 T C ZSWIM2 Silent p.L431L 0.30 TCGA-BR-8361-01 2 187713711 187713711 C T ZSWIM2 Silent p.P49P 0.50 TCGA-BR-8361-01 2 190611170 190611170 T G ANKAR Silent p.P1374P 0.27 TCGA-BR-8361-01 2 191760352 191760352 G A GLS Missense_Mutation p.R169Q 0.29 tolerated(0.25) benign(0.028) TCGA-BR-8361-01 2 192863895 192863896 - T TMEFF2 Frame_Shift_Ins p.N192Kfs*7 0.26 TCGA-BR-8361-01 2 196834715 196834715 T - DNAH7 Frame_Shift_Del p.K721Rfs*5 0.23 TCGA-BR-8361-01 2 198353864 198353864 T - HSPD1 Frame_Shift_Del p.G360Efs*19 0.31 TCGA-BR-8361-01 2 202483623 202483623 G A ALS2CR11 Silent p.N77N 0.35 TCGA-BR-8361-01 2 202575807 202575807 C T ALS2 Silent p.Q1343Q 0.29 TCGA-BR-8361-01 2 20451242 20451242 A - PUM2 3'UTR 0.31 TCGA-BR-8361-01 2 207482398 207482398 T C ADAM23 3'UTR 0.29 TCGA-BR-8361-01 2 207953238 207953238 C T KLF7 Silent p.T267T 0.38 TCGA-BR-8361-01 2 20845118 20845118 C A HS1BP3 Missense_Mutation p.E60D 0.24 tolerated(0.09) benign(0.186) TCGA-BR-8361-01 2 208725856 208725856 T C PLEKHM3 Missense_Mutation p.Y694C 0.34 deleterious(0) probably_damaging(1) TCGA-BR-8361-01 2 209209918 209209918 G A PIKFYVE Missense_Mutation p.S1704N 0.37 deleterious(0.03) benign(0.276) TCGA-BR-8361-01 2 209212722 209212722 C T PIKFYVE Silent p.T1783T 0.25 TCGA-BR-8361-01 2 210559225 210559225 A G MAP2 Silent p.E777E 0.36 TCGA-BR-8361-01 2 210570373 210570373 C T MAP2 Nonsense_Mutation p.R1552* 0.23 TCGA-BR-8361-01 2 212589893 212589893 A G ERBB4 Missense_Mutation p.C217R 0.30 deleterious(0) probably_damaging(1) TCGA-BR-8361-01 2 215646085 215646085 T - BARD1 Frame_Shift_Del p.D172Mfs*40 0.24 TCGA-BR-8361-01 2 215818621 215818621 A - ABCA12 Frame_Shift_Del p.S2202Pfs*5 0.28 TCGA-BR-8361-01 2 216257776 216257776 A G FN1 Missense_Mutation p.V1316A 0.24 deleterious(0.02) probably_damaging(0.998) TCGA-BR-8361-01 2 218674687 218674687 A G TNS1 Missense_Mutation p.V1607A 0.23 deleterious(0) probably_damaging(0.959) TCGA-BR-8361-01 2 219868908 219868910 TCT - CCDC108 In_Frame_Del p.E1774del 0.24 TCGA-BR-8361-01 2 219900384 219900384 G A CCDC108 Silent p.P120P 0.27 TCGA-BR-8361-01 2 220033482 220033482 A G SLC23A3 Missense_Mutation p.F197S 0.24 tolerated(0.15) benign(0.217) TCGA-BR-8361-01 2 220098560 220098560 C T ANKZF1 Nonsense_Mutation p.Q315* 0.29 TCGA-BR-8361-01 2 220331921 220331921 C T SPEG Silent p.A969A 0.26 TCGA-BR-8361-01 2 220379897 220379897 C T ASIC4 Missense_Mutation p.R278C 0.24 deleterious(0.03) probably_damaging(0.959) TCGA-BR-8361-01 2 220502335 220502335 C - SLC4A3 Frame_Shift_Del p.P885Lfs*49 0.33 TCGA-BR-8361-01 2 223158481 223158481 G A PAX3 Intron 0.34 TCGA-BR-8361-01 2 224856607 224856607 C T SERPINE2 Missense_Mutation p.E212K 0.28 tolerated(0.38) probably_damaging(0.97) TCGA-BR-8361-01 2 224866442 224866442 G A SERPINE2 Missense_Mutation p.A71V 0.35 deleterious(0) probably_damaging(0.973) TCGA-BR-8361-01 2 225637972 225637972 T C DOCK10 Missense_Mutation p.M2036V 0.13 deleterious(0.02) benign(0.019) TCGA-BR-8361-01 2 228102831 228102831 C T COL4A3 Intron 0.25 TCGA-BR-8361-01 2 228560704 228560704 C T SLC19A3 Missense_Mutation p.G358D 0.28 deleterious(0.01) probably_damaging(0.928) TCGA-BR-8361-01 2 229890607 229890607 C T PID1 Missense_Mutation p.R163H 0.29 deleterious(0) probably_damaging(0.998) TCGA-BR-8361-01 2 230020538 230020538 C T PID1 Missense_Mutation p.C89Y 0.28 tolerated_low_confidence(1) benign(0.001) TCGA-BR-8361-01 2 231372706 231372706 A G SP100 Splice_Site p.X672_splice 0.30 TCGA-BR-8361-01 2 233244007 233244007 A G ALPP Silent p.P97P 0.22 TCGA-BR-8361-01 2 233244010 233244010 T C ALPP Silent p.Y98Y 0.23 TCGA-BR-8361-01 2 233350967 233350967 C T ECEL1 Missense_Mutation p.G133S 0.36 deleterious(0.02) benign(0.334) TCGA-BR-8361-01 2 235950020 235950020 A G SH3BP4 Missense_Mutation p.T203A 0.51 tolerated(0.74) benign(0.001) TCGA-BR-8361-01 2 242051830 242051830 G A PASK Missense_Mutation p.R1127C 0.50 deleterious(0) probably_damaging(0.989) TCGA-BR-8361-01 2 242573298 242573300 TCT - THAP4 In_Frame_Del p.K91del 0.39 TCGA-BR-8361-01 2 24990984 24990984 A G NCOA1 Intron 0.32 TCGA-BR-8361-01 2 25523009 25523009 G - DNMT3A Frame_Shift_Del p.P59Rfs*13 0.47 TCGA-BR-8361-01 2 26435360 26435360 T - HADHA Intron 0.17 TCGA-BR-8361-01 2 26597961 26597961 T C EPT1 Silent p.Y209Y 0.29 TCGA-BR-8361-01 2 26950927 26950927 G A KCNK3 Missense_Mutation p.V226I 0.28 tolerated(0.83) benign(0.044) TCGA-BR-8361-01 2 27424662 27424662 G A SLC5A6 Silent p.I472I 0.43 TCGA-BR-8361-01 2 27683894 27683894 C T IFT172 Missense_Mutation p.A837T 0.29 deleterious(0.03) benign(0.134) TCGA-BR-8361-01 2 27821012 27821012 G A ZNF512 Silent p.S56S 0.30 TCGA-BR-8361-01 2 29358489 29358489 C T CLIP4 Missense_Mutation p.A202V 0.29 deleterious(0.02) benign(0.069) TCGA-BR-8361-01 2 29446357 29446357 C T ALK Silent p.Q1070Q 0.28 TCGA-BR-8361-01 2 30682532 30682532 C T LCLAT1 Silent p.N18N 0.24 TCGA-BR-8361-01 2 31360999 31360999 C - GALNT14 5'UTR 0.23 TCGA-BR-8361-01 2 32476259 32476259 C T NLRC4 Missense_Mutation p.G225D 0.32 tolerated(0.8) benign(0) TCGA-BR-8361-01 2 33359928 33359928 G A LTBP1 Missense_Mutation p.G368S 0.43 deleterious(0.03) possibly_damaging(0.817) TCGA-BR-8361-01 2 33488371 33488371 A G LTBP1 Silent p.E843E 0.25 TCGA-BR-8361-01 2 3604479 3604479 T C RNASEH1 Silent p.A48A 0.22 TCGA-BR-8361-01 2 36749409 36749409 G - CRIM1 Frame_Shift_Del p.C794Lfs*6 0.23 TCGA-BR-8361-01 2 37297376 37297376 C T HEATR5B Silent p.T308T 0.28 TCGA-BR-8361-01 2 38178436 38178436 C T RMDN2 Silent p.D26D 0.41 TCGA-BR-8361-01 2 43452512 43452512 C - ZFP36L2 Frame_Shift_Del p.G144Afs*43 0.33 TCGA-BR-8361-01 2 44065144 44065144 G T ABCG5 Intron 0.25 TCGA-BR-8361-01 2 45616440 45616440 G A SRBD1 3'UTR 0.30 TCGA-BR-8361-01 2 45778293 45778293 C G SRBD1 Missense_Mutation p.G549A 0.20 deleterious(0.01) probably_damaging(0.986) TCGA-BR-8361-01 2 45801772 45801772 C T SRBD1 Missense_Mutation p.R388Q 0.21 deleterious(0.01) probably_damaging(0.984) TCGA-BR-8361-01 2 46607459 46607459 C T EPAS1 Missense_Mutation p.R550W 0.26 deleterious(0.01) possibly_damaging(0.773) TCGA-BR-8361-01 2 49216165 49216165 T A FSHR Missense_Mutation p.T159S 0.32 tolerated(0.87) benign(0.001) TCGA-BR-8361-01 2 54042070 54042070 G - ERLEC1 Frame_Shift_Del 0.10 TCGA-BR-8361-01 2 54128645 54128645 G T PSME4 Missense_Mutation p.L1043I 0.13 tolerated(0.29) benign(0.017) TCGA-BR-8361-01 2 61508272 61508272 T C USP34 Missense_Mutation p.T1702A 0.41 tolerated(0.18) benign(0.024) TCGA-BR-8361-01 2 61515896 61515896 G A USP34 Silent p.S1555S 0.32 TCGA-BR-8361-01 2 68765314 68765314 A G APLF Missense_Mutation p.N372S 0.30 tolerated(0.38) benign(0.026) TCGA-BR-8361-01 2 7001506 7001506 C T CMPK2 Silent p.T267T 0.29 TCGA-BR-8361-01 2 70131385 70131385 G A SNRNP27 Splice_Site p.X138_splice 0.33 TCGA-BR-8361-01 2 70164405 70164405 C T MXD1 Silent p.I119I 0.34 TCGA-BR-8361-01 2 70392682 70392682 T - C2orf42 Frame_Shift_Del p.K410Nfs*38 0.25 TCGA-BR-8361-01 2 70402837 70402837 T - C2orf42 Frame_Shift_Del p.K336Sfs*8 0.25 TCGA-BR-8361-01 2 71633328 71633328 T C ZNF638 Missense_Mutation p.V1024A 0.28 deleterious(0.02) benign(0.04) TCGA-BR-8361-01 2 7179767 7179767 G A RNF144A Missense_Mutation p.G252D 0.27 deleterious(0) probably_damaging(0.992) TCGA-BR-8361-01 2 74683252 74683252 C A INO80B Silent p.P131P 0.32 TCGA-BR-8361-01 2 75276557 75276557 G A TACR1 3'UTR 0.33 TCGA-BR-8361-01 2 86386713 86386713 A G IMMT Silent p.A326A 0.31 TCGA-BR-8361-01 2 88474159 88474159 T C THNSL2 Silent p.D75D 0.26 TCGA-BR-8361-01 2 89292168 89292168 T C IGKV1-8 Silent p.T35T 0.29 TCGA-BR-8361-01 2 89459260 89459260 T C IGKV6-21 Missense_Mutation p.Y106C 0.29 deleterious(0) possibly_damaging(0.571) TCGA-BR-8361-01 2 89976280 89976280 T C IGKV2D-30 Missense_Mutation p.Y51H 0.30 tolerated(1) benign(0.002) TCGA-BR-8361-01 2 95766226 95766226 T C MRPS5 Silent p.Q308Q 0.19 TCGA-BR-8361-01 2 96780540 96780540 C T ADRA2B 3'UTR 0.38 TCGA-BR-8361-01 2 96780880 96780880 G A ADRA2B Missense_Mutation p.R337C 0.88 deleterious(0) probably_damaging(0.944) TCGA-BR-8361-01 2 97866080 97866080 G A ANKRD36 Missense_Mutation p.R922Q 0.12 tolerated_low_confidence(1) benign(0.238) TCGA-BR-8361-01 2 98349407 98349407 T C ZAP70 Missense_Mutation p.Y209H 0.25 tolerated(0.1) probably_damaging(0.992) TCGA-BR-8361-01 2 98377288 98377288 G T TMEM131 Missense_Mutation p.A1660D 0.26 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-BR-8361-01 2 99439605 99439605 G - KIAA1211L Frame_Shift_Del p.A378Qfs*121 0.27 TCGA-BR-8361-01 3 100567662 100567662 G A ABI3BP Missense_Mutation p.P478L 0.15 tolerated(0.33) benign(0) TCGA-BR-8361-01 3 100593724 100593724 G T ABI3BP Missense_Mutation p.L298I 0.27 tolerated(1) benign(0) TCGA-BR-8361-01 3 101085558 101085558 T - SENP7 Frame_Shift_Del p.N345Tfs*32 0.22 TCGA-BR-8361-01 3 101484459 101484459 T - CEP97 3'UTR 0.27 TCGA-BR-8361-01 3 10392233 10392233 C T ATP2B2 Missense_Mutation p.R722Q 0.39 tolerated(0.11) benign(0.028) TCGA-BR-8361-01 3 108672475 108672475 A T GUCA1C Silent p.G45G 0.05 TCGA-BR-8361-01 3 111603433 111603433 G A PHLDB2 Missense_Mutation p.R170Q 0.23 tolerated_low_confidence(0.09) benign(0.01) TCGA-BR-8361-01 3 111604167 111604167 A G PHLDB2 Missense_Mutation p.S415G 0.19 deleterious(0) probably_damaging(0.984) TCGA-BR-8361-01 3 112063825 112063825 G A CD200 Silent p.Q62Q 0.21 TCGA-BR-8361-01 3 112993431 112993431 C T BOC Missense_Mutation p.R482C 0.26 deleterious(0) probably_damaging(0.989) TCGA-BR-8361-01 3 113378335 113378335 T C KIAA2018 Missense_Mutation p.S732G 0.20 benign(0) TCGA-BR-8361-01 3 113795748 113795748 G A QTRTD1 Silent p.L247L 0.26 TCGA-BR-8361-01 3 119120749 119120749 G A ARHGAP31 Missense_Mutation p.G384S 0.17 tolerated(0.37) benign(0.002) TCGA-BR-8361-01 3 119121085 119121085 C A ARHGAP31 Missense_Mutation p.L496I 0.31 deleterious(0) probably_damaging(0.996) TCGA-BR-8361-01 3 119305260 119305260 C A ADPRH Missense_Mutation p.P143T 0.19 tolerated(0.46) possibly_damaging(0.745) TCGA-BR-8361-01 3 121828232 121828232 G A CD86 Missense_Mutation p.R275Q 0.21 tolerated(1) benign(0) TCGA-BR-8361-01 3 121838286 121838287 - A CD86 Frame_Shift_Ins p.I301Nfs*5 0.16 TCGA-BR-8361-01 3 12187285 12187285 A G SYN2 RNA 0.29 TCGA-BR-8361-01 3 122658273 122658273 T C SEMA5B Missense_Mutation p.Q212R 0.26 deleterious(0) probably_damaging(0.966) TCGA-BR-8361-01 3 123452835 123452835 C T MYLK Silent p.P336P 0.24 TCGA-BR-8361-01 3 124951658 124951658 G A ZNF148 Missense_Mutation p.P638S 0.21 tolerated(0.74) benign(0.002) TCGA-BR-8361-01 3 126062510 126062510 A - KLF15 3'UTR 0.17 TCGA-BR-8361-01 3 126114804 126114806 GAG - CCDC37 5'UTR 0.18 TCGA-BR-8361-01 3 126219563 126219563 C T UROC1 Missense_Mutation p.V434M 0.14 tolerated(0.06) possibly_damaging(0.447) TCGA-BR-8361-01 3 126226631 126226631 A G UROC1 Missense_Mutation p.S186P 0.32 deleterious(0) probably_damaging(0.992) TCGA-BR-8361-01 3 126736719 126736719 G A PLXNA1 Missense_Mutation p.G1215E 0.32 tolerated(0.06) probably_damaging(0.994) TCGA-BR-8361-01 3 127396615 127396615 G A ABTB1 Missense_Mutation p.V320I 0.20 tolerated(1) benign(0.005) TCGA-BR-8361-01 3 128344800 128344800 A G RPN1 Missense_Mutation p.Y398H 0.25 deleterious(0.05) benign(0.285) TCGA-BR-8361-01 3 128603583 128603583 G A ACAD9 Missense_Mutation p.E80K 0.24 deleterious(0.02) possibly_damaging(0.809) TCGA-BR-8361-01 3 128612407 128612407 G A ACAD9 Missense_Mutation p.R85Q 0.25 tolerated(0.34) benign(0.015) TCGA-BR-8361-01 3 129023513 129023513 C T HMCES Missense_Mutation p.P304S 0.29 tolerated(0.19) benign(0.005) TCGA-BR-8361-01 3 130284028 130284028 C T COL6A6 Silent p.S284S 0.22 TCGA-BR-8361-01 3 130660493 130660493 G A ATP2C1 Missense_Mutation p.V195I 0.16 tolerated(0.1) benign(0.44) TCGA-BR-8361-01 3 130743303 130743303 T - ASTE1 Frame_Shift_Del p.K283Rfs*22 0.21 TCGA-BR-8361-01 3 132277865 132277865 C T ACAD11 Missense_Mutation p.A765T 0.29 deleterious(0.02) possibly_damaging(0.89) TCGA-BR-8361-01 3 132320091 132320091 G A ACKR4 Missense_Mutation p.A284T 0.26 deleterious(0) probably_damaging(0.993) TCGA-BR-8361-01 3 133647304 133647304 C T C3orf36 Missense_Mutation p.C115Y 0.32 deleterious_low_confidence(0) possibly_damaging(0.588) TCGA-BR-8361-01 3 133653500 133653500 C T SLCO2A1 3'UTR 0.10 TCGA-BR-8361-01 3 134256014 134256014 G A CEP63 Silent p.S153S 0.19 TCGA-BR-8361-01 3 137786534 137786534 G - DZIP1L Frame_Shift_Del p.P614Rfs*69 0.30 TCGA-BR-8361-01 3 137822592 137822592 G T DZIP1L Silent p.R74R 0.21 TCGA-BR-8361-01 3 141327408 141327408 C T RASA2 Silent p.D698D 0.21 TCGA-BR-8361-01 3 142051254 142051254 A G XRN1 Silent p.Y1394Y 0.27 TCGA-BR-8361-01 3 142217557 142217557 T - ATR Frame_Shift_Del p.R1814Efs*10 0.18 TCGA-BR-8361-01 3 142681341 142681341 G A PAQR9 Missense_Mutation p.R280C 0.28 deleterious(0) probably_damaging(0.996) TCGA-BR-8361-01 3 1443201 1443201 A - CNTN6 Frame_Shift_Del p.N931Mfs*41 0.21 TCGA-BR-8361-01 3 145912053 145912053 C T PLSCR4 3'UTR 0.30 TCGA-BR-8361-01 3 146323089 146323090 - A PLSCR5 5'UTR 0.14 TCGA-BR-8361-01 3 147114080 147114080 C T ZIC4 Missense_Mutation p.A133T 0.27 tolerated(0.17) benign(0) TCGA-BR-8361-01 3 14862557 14862557 C T FGD5 Missense_Mutation p.T660M 0.33 deleterious(0.03) probably_damaging(0.98) TCGA-BR-8361-01 3 148789388 148789389 - T HLTF Frame_Shift_Ins p.H228Qfs*2 0.15 TCGA-BR-8361-01 3 148916275 148916275 T C CP Missense_Mutation p.D531G 0.25 deleterious(0) probably_damaging(0.999) TCGA-BR-8361-01 3 150690465 150690465 A - CLRN1 Frame_Shift_Del p.C11Afs*15 0.16 TCGA-BR-8361-01 3 151075163 151075163 G T MED12L Missense_Mutation p.G907W 0.05 deleterious(0) probably_damaging(0.991) TCGA-BR-8361-01 3 151150671 151150671 A - MED12L 3'UTR 0.33 TCGA-BR-8361-01 3 151161036 151161036 C T IGSF10 Missense_Mutation p.G1900E 0.23 deleterious(0) probably_damaging(1) TCGA-BR-8361-01 3 15726870 15726870 G A ANKRD28 Missense_Mutation p.T721M 0.33 deleterious(0) probably_damaging(0.992) TCGA-BR-8361-01 3 160219816 160219816 A G KPNA4 3'UTR 0.31 TCGA-BR-8361-01 3 160786870 160786870 T C PPM1L Silent p.F336F 0.28 TCGA-BR-8361-01 3 164735589 164735589 A - SI Frame_Shift_Del p.L1198Wfs*15 0.18 TCGA-BR-8361-01 3 164755741 164755741 A G SI Silent p.L791L 0.26 TCGA-BR-8361-01 3 167183441 167183441 A - SERPINI2 Frame_Shift_Del p.S167Qfs*8 0.25 TCGA-BR-8361-01 3 17056204 17056204 C A PLCL2 Missense_Mutation p.A814E 0.22 deleterious(0) probably_damaging(0.911) TCGA-BR-8361-01 3 170797414 170797416 TAG - TNIK In_Frame_Del p.Y1114del 0.23 TCGA-BR-8361-01 3 171451263 171451263 T - PLD1 Frame_Shift_Del p.M193Cfs*16 0.22 TCGA-BR-8361-01 3 172115243 172115243 T C FNDC3B Missense_Mutation p.L1198S 0.30 deleterious(0) possibly_damaging(0.638) TCGA-BR-8361-01 3 172166194 172166194 C T GHSR Missense_Mutation p.A4T 0.29 tolerated_low_confidence(0.44) benign(0.014) TCGA-BR-8361-01 3 181430415 181430415 G A SOX2 Silent p.P89P 0.37 TCGA-BR-8361-01 3 182602674 182602674 T - ATP11B Frame_Shift_Del p.Y884Ifs*30 0.28 TCGA-BR-8361-01 3 182614514 182614514 T G ATP11B Silent p.T1003T 0.30 TCGA-BR-8361-01 3 182735069 182735069 G A MCCC1 Silent p.I678I 0.32 TCGA-BR-8361-01 3 183015012 183015012 G A MCF2L2 Intron 0.38 TCGA-BR-8361-01 3 183273230 183273230 A G KLHL6 Missense_Mutation p.L71P 0.34 deleterious(0.03) probably_damaging(0.998) TCGA-BR-8361-01 3 183667870 183667870 G A ABCC5 Silent p.N996N 0.28 TCGA-BR-8361-01 3 183824131 183824131 G A HTR3E Missense_Mutation p.G407S 0.31 tolerated(0.08) benign(0.298) TCGA-BR-8361-01 3 184044406 184044406 C A EIF4G1 Missense_Mutation p.P1112H 0.30 deleterious(0) possibly_damaging(0.566) TCGA-BR-8361-01 3 189038562 189038562 C T TPRG1 Missense_Mutation p.R261C 0.24 tolerated(0.06) benign(0.046) TCGA-BR-8361-01 3 189838054 189838054 C T LEPREL1 Missense_Mutation p.R156Q 0.60 tolerated(0.07) benign(0.011) TCGA-BR-8361-01 3 190995910 190995910 C T UTS2B Silent p.L51L 0.21 TCGA-BR-8361-01 3 19384076 19384079 CAGA - KCNH8 Splice_Site p.X148_splice 0.38 TCGA-BR-8361-01 3 19389422 19389422 T C KCNH8 Missense_Mutation p.V259A 0.33 deleterious(0.03) probably_damaging(0.999) TCGA-BR-8361-01 3 195498560 195498560 G A MUC4 Missense_Mutation p.A4402V 0.40 benign(0.092) TCGA-BR-8361-01 3 195969488 195969490 ATC - PCYT1A In_Frame_Del p.D170del 0.20 TCGA-BR-8361-01 3 196199488 196199488 G A RNF168 Silent p.A306A 0.24 TCGA-BR-8361-01 3 196242123 196242123 A - SMCO1 5'UTR 0.19 TCGA-BR-8361-01 3 196388325 196388325 G - NRROS Frame_Shift_Del p.A606Pfs*25 0.24 TCGA-BR-8361-01 3 197444928 197444928 C T KIAA0226 Missense_Mutation p.V47I 0.35 tolerated(0.06) probably_damaging(0.997) TCGA-BR-8361-01 3 20212216 20212216 T - SGOL1 Frame_Shift_Del p.R522Efs*39 0.31 TCGA-BR-8361-01 3 26751645 26751645 C T LRRC3B Missense_Mutation p.A161V 0.17 tolerated(0.21) benign(0.01) TCGA-BR-8361-01 3 27152802 27152802 G T NEK10 Silent p.S1160S 0.24 TCGA-BR-8361-01 3 27436549 27436549 T G SLC4A7 Missense_Mutation p.T912P 0.25 deleterious(0) probably_damaging(0.984) TCGA-BR-8361-01 3 27460079 27460079 G C SLC4A7 Silent p.L510L 0.18 TCGA-BR-8361-01 3 27465559 27465559 C T SLC4A7 Missense_Mutation p.S403N 0.14 tolerated(0.25) probably_damaging(0.992) TCGA-BR-8361-01 3 32859698 32859698 G - TRIM71 Frame_Shift_Del p.G44Afs*55 0.19 TCGA-BR-8361-01 3 33110382 33110382 C T GLB1 Missense_Mutation p.R109Q 0.22 tolerated(1) benign(0.001) TCGA-BR-8361-01 3 33255514 33255514 C T SUSD5 Missense_Mutation p.A66T 0.23 deleterious(0) probably_damaging(1) TCGA-BR-8361-01 3 36779387 36779387 T C DCLK3 Missense_Mutation p.E255G 0.27 tolerated(0.17) benign(0.003) TCGA-BR-8361-01 3 37367468 37367468 A - GOLGA4 Frame_Shift_Del p.V1389Lfs*10 0.20 TCGA-BR-8361-01 3 37670704 37670704 G A ITGA9 Silent p.P572P 0.23 TCGA-BR-8361-01 3 38044690 38044690 G A VILL Missense_Mutation p.R564Q 0.20 deleterious(0) probably_damaging(0.923) TCGA-BR-8361-01 3 38170828 38170828 C T ACAA1 Silent p.S166S 0.18 TCGA-BR-8361-01 3 38523799 38523799 G A ACVR2B Silent p.E395E 0.24 TCGA-BR-8361-01 3 38565660 38565662 AGG - EXOG In_Frame_Del p.E306del 0.34 TCGA-BR-8361-01 3 38592894 38592894 G T SCN5A Missense_Mutation p.L1657I 0.16 deleterious(0.01) probably_damaging(0.997) TCGA-BR-8361-01 3 38671808 38671808 A G SCN5A Missense_Mutation p.V129A 0.17 deleterious(0.01) benign(0.128) TCGA-BR-8361-01 3 38924806 38924806 C T SCN11A Missense_Mutation p.R1046Q 0.16 deleterious(0) probably_damaging(1) TCGA-BR-8361-01 3 39226595 39226595 G A XIRP1 Nonsense_Mutation p.Q1448* 0.16 TCGA-BR-8361-01 3 39425145 39425145 G A SLC25A38 5'UTR 0.33 TCGA-BR-8361-01 3 39453198 39453198 G A RPSA Missense_Mutation p.R186H 0.22 tolerated(0.14) benign(0.093) TCGA-BR-8361-01 3 42906947 42906947 G A ACKR2 Missense_Mutation p.R318H 0.31 tolerated(0.05) benign(0.04) TCGA-BR-8361-01 3 44692631 44692631 A G ZNF35 Silent p.E24E 0.34 TCGA-BR-8361-01 3 44893702 44893702 G C KIF15 Missense_Mutation p.E1325D 0.21 tolerated(0.06) benign(0.233) TCGA-BR-8361-01 3 46560367 46560368 - T LRRC2 3'UTR 0.35 TCGA-BR-8361-01 3 46722846 46722846 G A ALS2CL Silent p.H442H 0.39 TCGA-BR-8361-01 3 47049819 47049819 C T NBEAL2 Missense_Mutation p.A2589V 0.45 deleterious(0.01) benign(0.259) TCGA-BR-8361-01 3 47449901 47449901 C T PTPN23 Silent p.I417I 0.25 TCGA-BR-8361-01 3 48608692 48608692 C T COL7A1 Missense_Mutation p.G2363E 0.21 probably_damaging(1) TCGA-BR-8361-01 3 48630567 48630567 G A COL7A1 Missense_Mutation p.T217M 0.38 unknown(0) TCGA-BR-8361-01 3 48694579 48694579 G A CELSR3 Silent p.N1317N 0.35 TCGA-BR-8361-01 3 49064248 49064248 G A IMPDH2 Missense_Mutation p.R231W 0.29 deleterious(0.03) possibly_damaging(0.511) TCGA-BR-8361-01 3 49724498 49724498 C T MST1 Missense_Mutation p.A204T 0.23 tolerated(0.55) benign(0.005) TCGA-BR-8361-01 3 49836222 49836222 C A CDHR4 Intron 0.31 TCGA-BR-8361-01 3 49836868 49836868 G T CDHR4 Missense_Mutation p.L18I 0.27 deleterious(0.02) benign(0.334) TCGA-BR-8361-01 3 50253036 50253036 C T SLC38A3 RNA 0.30 TCGA-BR-8361-01 3 50355798 50355798 C T HYAL2 Missense_Mutation p.R395H 0.18 tolerated(0.2) benign(0.006) TCGA-BR-8361-01 3 51417604 51417605 CC - DOCK3 Frame_Shift_Del p.P1852Sfs*46 0.26 TCGA-BR-8361-01 3 51749521 51749521 G A GRM2 Missense_Mutation p.G578S 0.22 deleterious(0) probably_damaging(1) TCGA-BR-8361-01 3 52406352 52406352 G A DNAH1 Missense_Mutation p.R2259H 0.48 benign(0.103) TCGA-BR-8361-01 3 52442054 52442054 C T BAP1 Missense_Mutation p.V99M 0.32 deleterious(0) probably_damaging(0.998) TCGA-BR-8361-01 3 52861195 52861195 G T ITIH4 Silent p.T90T 0.20 TCGA-BR-8361-01 3 53852023 53852023 G A CHDH Silent p.S522S 0.29 TCGA-BR-8361-01 3 54933814 54933814 G T CACNA2D3 Splice_Site p.X790_splice 0.28 TCGA-BR-8361-01 3 55733484 55733493 GTAATGGTGA ATGGTGGTGG ERC2 Missense_Mutation p.Y923H 0.23 TCGA-BR-8361-01 3 56052950 56052950 G A ERC2 Missense_Mutation p.A584V 0.31 tolerated(0.08) benign(0.064) TCGA-BR-8361-01 3 62501777 62501777 C T CADPS Silent p.A846A 0.26 TCGA-BR-8361-01 3 64138947 64138947 C T PRICKLE2 Missense_Mutation p.R233H 0.31 deleterious(0) probably_damaging(0.99) TCGA-BR-8361-01 3 64526832 64526832 C T ADAMTS9 Silent p.T1820T 0.22 TCGA-BR-8361-01 3 68934423 68934423 A T FAM19A4 5'UTR 0.51 TCGA-BR-8361-01 3 69299230 69299230 G A FRMD4B Silent p.S174S 0.19 TCGA-BR-8361-01 3 70005622 70005622 A C MITF Missense_Mutation p.R318S 0.22 deleterious(0) probably_damaging(0.999) TCGA-BR-8361-01 3 73432578 73432578 C T PDZRN3 Missense_Mutation p.G1047S 0.24 deleterious(0) probably_damaging(1) TCGA-BR-8361-01 3 8809680 8809680 C T OXTR Missense_Mutation p.R65H 0.25 tolerated(1) benign(0.006) TCGA-BR-8361-01 3 93619652 93619652 A G PROS1 Silent p.C241C 0.16 TCGA-BR-8361-01 3 97705698 97705698 C T GABRR3 Silent p.S411S 0.12 TCGA-BR-8361-01 3 97887908 97887908 G A OR5H15 Missense_Mutation p.R122H 0.25 deleterious(0.03) benign(0.433) TCGA-BR-8361-01 3 9870735 9870735 A C TTLL3 Missense_Mutation p.S547R 0.28 deleterious(0.01) probably_damaging(0.935) TCGA-BR-8361-01 3 99567819 99567819 G A FILIP1L Missense_Mutation p.P901S 0.22 deleterious(0.03) probably_damaging(0.95) TCGA-BR-8361-01 3 99569276 99569276 A G FILIP1L Missense_Mutation p.L415P 0.22 deleterious(0.02) benign(0.24) TCGA-BR-8361-01 4 103595217 103595217 C T MANBA Missense_Mutation p.R324K 0.24 deleterious(0.04) possibly_damaging(0.831) TCGA-BR-8361-01 4 104512789 104512789 G A TACR3 Missense_Mutation p.P314S 0.49 deleterious(0) probably_damaging(1) TCGA-BR-8361-01 4 108935649 108935649 C T HADH Silent p.S108S 0.10 TCGA-BR-8361-01 4 113333097 113333097 G A ALPK1 Missense_Mutation p.A131T 0.13 tolerated(0.09) benign(0.305) TCGA-BR-8361-01 4 11400846 11400846 G A HS3ST1 Missense_Mutation p.R262W 0.31 deleterious(0.04) probably_damaging(0.958) TCGA-BR-8361-01 4 115998005 115998005 A G NDST4 Missense_Mutation p.M63T 0.46 tolerated(0.26) benign(0) TCGA-BR-8361-01 4 123663688 123663688 G A BBS12 Missense_Mutation p.R214Q 0.51 tolerated(0.4) benign(0) TCGA-BR-8361-01 4 130032966 130032966 C T C4orf33 3'UTR 0.30 TCGA-BR-8361-01 4 134072881 134072881 G A PCDH10 Missense_Mutation p.R529H 0.40 tolerated(0.05) probably_damaging(0.999) TCGA-BR-8361-01 4 140640448 140640448 C T MAML3 3'UTR 0.62 TCGA-BR-8361-01 4 145659121 145659121 G A HHIP 3'UTR 0.44 TCGA-BR-8361-01 4 147442908 147442908 T - SLC10A7 5'UTR 0.30 TCGA-BR-8361-01 4 153244156 153244156 C - FBXW7 Frame_Shift_Del p.S668Vfs*39 0.35 TCGA-BR-8361-01 4 153691554 153691554 G A TIGD4 Silent p.G201G 0.42 TCGA-BR-8361-01 4 15444274 15444274 C T C1QTNF7 Missense_Mutation p.P248S 0.31 tolerated(0.73) benign(0.209) TCGA-BR-8361-01 4 15572057 15572057 A G CC2D2A Missense_Mutation p.I1178V 0.25 tolerated(0.65) benign(0.007) TCGA-BR-8361-01 4 162459350 162459350 G T FSTL5 Missense_Mutation p.S427Y 0.40 deleterious(0) probably_damaging(0.996) TCGA-BR-8361-01 4 164247331 164247331 C T NPY1R Missense_Mutation p.V126M 0.50 deleterious(0.02) probably_damaging(1) TCGA-BR-8361-01 4 170523813 170523813 G A NEK1 5'UTR 0.47 TCGA-BR-8361-01 4 174294658 174294658 A G SAP30 Missense_Mutation p.T145A 0.51 tolerated(0.51) benign(0.009) TCGA-BR-8361-01 4 177082120 177082120 A G WDR17 Missense_Mutation p.Y930C 0.54 tolerated(0.18) benign(0.001) TCGA-BR-8361-01 4 177098716 177098716 G A WDR17 Missense_Mutation p.G1254R 0.41 tolerated(0.32) benign(0.01) TCGA-BR-8361-01 4 17805513 17805513 G A DCAF16 Silent p.S84S 0.22 TCGA-BR-8361-01 4 187118245 187118245 T - CYP4V2 Frame_Shift_Del p.Y191Tfs*7 0.35 TCGA-BR-8361-01 4 187518870 187518870 C T FAT1 Missense_Mutation p.V4112I 0.30 benign(0.08) TCGA-BR-8361-01 4 187532624 187532624 G A FAT1 Missense_Mutation p.R3257W 0.37 probably_damaging(0.999) TCGA-BR-8361-01 4 20525728 20525728 C T SLIT2 Missense_Mutation p.R456C 0.25 deleterious(0) probably_damaging(0.999) TCGA-BR-8361-01 4 2181141 2181141 G T POLN Missense_Mutation p.P358H 0.37 deleterious(0) probably_damaging(0.986) TCGA-BR-8361-01 4 2230912 2230912 G A POLN Missense_Mutation p.P16L 0.28 deleterious(0) probably_damaging(0.916) TCGA-BR-8361-01 4 25806253 25806253 C T SEL1L3 Silent p.T562T 0.31 TCGA-BR-8361-01 4 3318853 3318853 C T RGS12 Missense_Mutation p.T319M 0.21 tolerated(0.11) possibly_damaging(0.847) TCGA-BR-8361-01 4 38138782 38138782 T C TBC1D1 Silent p.L1111L 0.27 TCGA-BR-8361-01 4 39318611 39318611 C T RFC1 Missense_Mutation p.R376H 0.30 deleterious(0.03) possibly_damaging(0.904) TCGA-BR-8361-01 4 39408649 39408649 G T KLB Missense_Mutation p.R27M 0.30 deleterious_low_confidence(0.03) benign(0.372) TCGA-BR-8361-01 4 41984733 41984733 C T DCAF4L1 Silent p.Y308Y 0.30 TCGA-BR-8361-01 4 42414995 42414995 C T ATP8A1 Missense_Mutation p.V1145I 0.28 tolerated(0.29) possibly_damaging(0.897) TCGA-BR-8361-01 4 46967009 46967009 T G GABRA4 Missense_Mutation p.K371T 0.16 tolerated(0.2) benign(0.099) TCGA-BR-8361-01 4 46995418 46995418 G A GABRA4 Silent p.P8P 0.26 TCGA-BR-8361-01 4 47663848 47663848 G A CORIN Missense_Mutation p.R539C 0.31 deleterious(0) probably_damaging(0.956) TCGA-BR-8361-01 4 49063827 49063827 A T CWH43 Splice_Site p.X674_splice 0.45 TCGA-BR-8361-01 4 52938115 52938115 G A SPATA18 Missense_Mutation p.R184H 0.37 tolerated(0.09) probably_damaging(0.984) TCGA-BR-8361-01 4 5461854 5461854 C T STK32B Missense_Mutation p.R270C 0.25 deleterious(0) probably_damaging(0.984) TCGA-BR-8361-01 4 5624499 5624499 T C EVC2 Missense_Mutation p.N756D 0.20 tolerated(0.59) benign(0.08) TCGA-BR-8361-01 4 57897132 57897132 C T POLR2B Missense_Mutation p.A1168V 0.32 tolerated(0.08) benign(0.047) TCGA-BR-8361-01 4 57897443 57897443 G A IGFBP7 3'UTR 0.57 TCGA-BR-8361-01 4 6043924 6043924 C T JAKMIP1 Missense_Mutation p.A687T 0.15 deleterious(0) possibly_damaging(0.642) TCGA-BR-8361-01 4 6066711 6066712 - A JAKMIP1 Frame_Shift_Ins p.G443Wfs*3 0.25 TCGA-BR-8361-01 4 656917 656917 G A PDE6B Missense_Mutation p.G621S 0.30 tolerated(0.26) benign(0.187) TCGA-BR-8361-01 4 6606969 6606969 C T MAN2B2 Missense_Mutation p.A576V 0.32 tolerated(0.33) benign(0.003) TCGA-BR-8361-01 4 69426295 69426295 G A UGT2B17 Missense_Mutation p.A322V 0.28 deleterious(0.03) possibly_damaging(0.78) TCGA-BR-8361-01 4 71232432 71232432 T - SMR3A Frame_Shift_Del p.P44Lfs*78 0.38 TCGA-BR-8361-01 4 71347244 71347244 A G MUC7 Silent p.P261P 0.18 TCGA-BR-8361-01 4 71472425 71472425 C T AMBN Missense_Mutation p.A441V 0.39 tolerated(0.38) benign(0.016) TCGA-BR-8361-01 4 76695832 76695832 G A USO1 Missense_Mutation p.V189I 0.44 tolerated(0.11) benign(0.092) TCGA-BR-8361-01 4 79400610 79400610 A G FRAS1 Silent p.S2727S 0.76 TCGA-BR-8361-01 4 87808944 87808944 G A C4orf36 Missense_Mutation p.A108V 0.47 tolerated(1) benign(0.019) TCGA-BR-8361-01 4 985310 985310 C T SLC26A1 Missense_Mutation p.R61H 0.17 deleterious(0) possibly_damaging(0.649) TCGA-BR-8361-01 5 10461310 10461310 G A ROPN1L Silent p.A144A 0.28 TCGA-BR-8361-01 5 107559928 107559928 A G FBXL17 Missense_Mutation p.V503A 0.33 deleterious(0.01) probably_damaging(0.96) TCGA-BR-8361-01 5 110097004 110097004 C T SLC25A46 Missense_Mutation p.P260L 0.36 deleterious(0) probably_damaging(1) TCGA-BR-8361-01 5 11111073 11111073 G A CTNND2 Missense_Mutation p.T787M 0.25 tolerated(0.11) benign(0.358) TCGA-BR-8361-01 5 111506045 111506045 G A EPB41L4A Silent p.S564S 0.32 TCGA-BR-8361-01 5 112222807 112222807 C T REEP5 Missense_Mutation p.R142H 0.34 deleterious(0.01) benign(0.114) TCGA-BR-8361-01 5 11364912 11364912 A T CTNND2 Missense_Mutation p.I423N 0.40 deleterious(0) probably_damaging(0.918) TCGA-BR-8361-01 5 113831882 113831882 G C KCNN2 3'UTR 0.06 TCGA-BR-8361-01 5 114572215 114572215 A - PGGT1B Frame_Shift_Del p.C162Vfs*32 0.32 TCGA-BR-8361-01 5 115142176 115142176 G A CDO1 Missense_Mutation p.T148M 0.23 deleterious(0.04) probably_damaging(0.991) TCGA-BR-8361-01 5 115783003 115783003 G T SEMA6A Missense_Mutation p.P800H 0.30 deleterious(0) probably_damaging(0.95) TCGA-BR-8361-01 5 118465026 118465026 T - DMXL1 Frame_Shift_Del p.L410Yfs*17 0.19 TCGA-BR-8361-01 5 118485628 118485628 G A DMXL1 Missense_Mutation p.R1369H 0.26 deleterious(0) probably_damaging(0.982) TCGA-BR-8361-01 5 126993261 126993261 C T CTXN3 Silent p.N16N 0.25 TCGA-BR-8361-01 5 127622436 127622436 C T FBN2 Missense_Mutation p.R2329Q 0.23 tolerated(0.44) benign(0.124) TCGA-BR-8361-01 5 127624227 127624227 G A FBN2 Silent p.G2220G 0.33 TCGA-BR-8361-01 5 127873117 127873117 C T FBN2 Silent p.A60A 0.27 TCGA-BR-8361-01 5 131042192 131042192 A C FNIP1 Missense_Mutation p.S276A 0.37 deleterious(0.01) probably_damaging(0.992) TCGA-BR-8361-01 5 131324516 131324516 G A ACSL6 Missense_Mutation p.R212C 0.32 tolerated(0.13) benign(0.011) TCGA-BR-8361-01 5 131719977 131719977 G T SLC22A5 Silent p.V212V 0.32 TCGA-BR-8361-01 5 132238133 132238133 C T AFF4 Splice_Site p.X378_splice 0.11 TCGA-BR-8361-01 5 134190633 134190633 C T C5orf24 Missense_Mutation p.P15S 0.31 tolerated_low_confidence(1) benign(0.001) TCGA-BR-8361-01 5 134670542 134670542 T C H2AFY 3'UTR 0.35 TCGA-BR-8361-01 5 134724757 134724759 CTT - H2AFY In_Frame_Del p.K9del 0.32 TCGA-BR-8361-01 5 137756625 137756625 C - KDM3B Frame_Shift_Del p.P1317Rfs*10 0.19 TCGA-BR-8361-01 5 138160275 138160275 G T CTNNA1 Missense_Mutation p.Q215H 0.24 deleterious(0) benign(0.404) TCGA-BR-8361-01 5 140237279 140237279 C T PCDHA10 Missense_Mutation p.T549M 0.34 deleterious_low_confidence(0) possibly_damaging(0.611) TCGA-BR-8361-01 5 140248828 140248828 G A PCDHA11 Missense_Mutation p.R47H 0.27 deleterious_low_confidence(0.03) possibly_damaging(0.643) TCGA-BR-8361-01 5 140256906 140256906 G A PCDHA12 Missense_Mutation p.G617S 0.27 tolerated_low_confidence(0.18) benign(0.048) TCGA-BR-8361-01 5 140476189 140476189 G A PCDHB2 Silent p.S605S 0.22 TCGA-BR-8361-01 5 140481708 140481708 C T PCDHB3 Missense_Mutation p.P492L 0.26 deleterious_low_confidence(0.02) benign(0.002) TCGA-BR-8361-01 5 140516775 140516775 A C PCDHB5 Missense_Mutation p.K587Q 0.26 deleterious_low_confidence(0) probably_damaging(0.923) TCGA-BR-8361-01 5 140517298 140517298 G T PCDHB5 Missense_Mutation p.G761V 0.09 deleterious_low_confidence(0) benign(0.085) TCGA-BR-8361-01 5 140536926 140536926 C T PCDHB17 Silent p.P450P 0.05 TCGA-BR-8361-01 5 140559171 140559171 C T PCDHB8 Missense_Mutation p.S519L 0.27 deleterious_low_confidence(0) benign(0.276) TCGA-BR-8361-01 5 140563197 140563197 C T PCDHB16 Missense_Mutation p.P355S 0.06 tolerated_low_confidence(0.39) benign(0.256) TCGA-BR-8361-01 5 140573214 140573214 G A PCDHB10 Silent p.T363T 0.45 TCGA-BR-8361-01 5 140590223 140590223 C T PCDHB12 Missense_Mutation p.P582S 0.20 deleterious_low_confidence(0.01) benign(0.082) TCGA-BR-8361-01 5 140627174 140627174 G A PCDHB15 Silent p.A676A 0.34 TCGA-BR-8361-01 5 140627613 140627613 T A PCDHB15 3'UTR 0.55 TCGA-BR-8361-01 5 140712688 140712688 G A PCDHGA1 Intron 0.20 TCGA-BR-8361-01 5 140764119 140764119 C T PCDHGA7 Silent p.F551F 0.33 TCGA-BR-8361-01 5 140783163 140783163 C T PCDHGA9 Missense_Mutation p.S215L 0.39 tolerated_low_confidence(0.84) benign(0.028) TCGA-BR-8361-01 5 140789345 140789345 C T PCDHGB6 Missense_Mutation p.R526C 0.29 deleterious(0) probably_damaging(0.998) TCGA-BR-8361-01 5 140885041 140885041 C T PCDHGB6 Silent p.S853S 0.29 TCGA-BR-8361-01 5 140890548 140890548 T C PCDHGB6 Silent p.G867G 0.24 TCGA-BR-8361-01 5 140908488 140908488 C T DIAPH1 Silent p.L933L 0.21 TCGA-BR-8361-01 5 141029028 141029028 C T FCHSD1 Silent p.A103A 0.40 TCGA-BR-8361-01 5 141244531 141244533 CTT - PCDH1 In_Frame_Del p.K455del 0.30 TCGA-BR-8361-01 5 141248471 141248471 A G PCDH1 Missense_Mutation p.I189T 0.21 deleterious(0.04) probably_damaging(0.966) TCGA-BR-8361-01 5 142780298 142780298 C A NR3C1 Missense_Mutation p.G36V 0.35 deleterious_low_confidence(0) probably_damaging(1) TCGA-BR-8361-01 5 148206713 148206713 G A ADRB2 Missense_Mutation p.E107K 0.29 deleterious(0.03) benign(0.126) TCGA-BR-8361-01 5 149216029 149216029 G A PPARGC1B Missense_Mutation p.A671T 0.26 tolerated(0.25) benign(0.009) TCGA-BR-8361-01 5 150411948 150411948 C T TNIP1 Intron 0.44 TCGA-BR-8361-01 5 150885493 150885493 A G FAT2 Missense_Mutation p.F4228S 0.29 probably_damaging(0.953) TCGA-BR-8361-01 5 150907597 150907597 T - FAT2 Frame_Shift_Del p.K3375Rfs*20 0.22 TCGA-BR-8361-01 5 151043687 151043687 C T SPARC Missense_Mutation p.A282T 0.15 tolerated(0.54) probably_damaging(0.98) TCGA-BR-8361-01 5 151784762 151784762 A - NMUR2 5'UTR 0.26 TCGA-BR-8361-01 5 154065380 154065383 TTTA - MIR1303 RNA 0.43 TCGA-BR-8361-01 5 154254953 154254955 AGG - CNOT8 In_Frame_Del p.E279del 0.36 TCGA-BR-8361-01 5 158223392 158223392 C T EBF1 Silent p.G290G 0.24 TCGA-BR-8361-01 5 158695881 158695881 T - UBLCP1 5'UTR 0.40 TCGA-BR-8361-01 5 159833494 159833494 A G SLU7 Missense_Mutation p.V423A 0.29 deleterious(0.02) possibly_damaging(0.676) TCGA-BR-8361-01 5 167674485 167674485 A G TENM2 Missense_Mutation p.S2181G 0.21 deleterious(0.01) benign(0.013) TCGA-BR-8361-01 5 167995867 167995867 G A PANK3 Silent p.N55N 0.33 TCGA-BR-8361-01 5 168093688 168093688 G A SLIT3 Missense_Mutation p.P1448L 0.30 tolerated(0.19) benign(0) TCGA-BR-8361-01 5 169454916 169454916 G A DOCK2 Missense_Mutation p.R1144Q 0.16 deleterious(0.01) benign(0.039) TCGA-BR-8361-01 5 169454950 169454950 A G DOCK2 Silent p.S1155S 0.42 TCGA-BR-8361-01 5 169483739 169483739 C T DOCK2 Silent p.R1449R 0.15 TCGA-BR-8361-01 5 171533682 171533682 G A STK10 Missense_Mutation p.R244W 0.31 deleterious(0) probably_damaging(0.999) TCGA-BR-8361-01 5 173316671 173316671 A - CPEB4 5'UTR 0.31 TCGA-BR-8361-01 5 175306962 175306962 G A CPLX2 Missense_Mutation p.D107N 0.29 deleterious(0) probably_damaging(0.994) TCGA-BR-8361-01 5 175772305 175772305 C T SIMC1 Missense_Mutation p.R411C 0.30 tolerated(0.18) possibly_damaging(0.879) TCGA-BR-8361-01 5 176016134 176016134 T G CDHR2 Missense_Mutation p.F987V 0.30 deleterious(0) probably_damaging(0.98) TCGA-BR-8361-01 5 176306759 176306759 G T UNC5A Missense_Mutation p.A801S 0.27 tolerated(0.31) benign(0.037) TCGA-BR-8361-01 5 176517963 176517963 G A FGFR4 Missense_Mutation p.R154H 0.29 deleterious(0) probably_damaging(1) TCGA-BR-8361-01 5 177637254 177637254 C T HNRNPAB Silent p.Y303Y 0.25 TCGA-BR-8361-01 5 178771083 178771083 G A ADAMTS2 Silent p.H73H 0.25 TCGA-BR-8361-01 5 179201896 179201896 T - MAML1 3'UTR 0.18 TCGA-BR-8361-01 5 180218736 180218736 C T MGAT1 Silent p.P412P 0.22 TCGA-BR-8361-01 5 26881636 26881636 T C CDH9 Missense_Mutation p.N660S 0.31 deleterious(0) probably_damaging(0.992) TCGA-BR-8361-01 5 2748586 2748586 A C IRX2 Silent p.S412S 0.38 TCGA-BR-8361-01 5 31299688 31299688 T C CDH6 Missense_Mutation p.V254A 0.28 deleterious(0.02) benign(0.352) TCGA-BR-8361-01 5 32088318 32088318 G T PDZD2 Missense_Mutation p.K1588N 0.33 tolerated(0.12) possibly_damaging(0.698) TCGA-BR-8361-01 5 32126169 32126169 C T GOLPH3 3'UTR 0.21 TCGA-BR-8361-01 5 33658359 33658359 G A ADAMTS12 Missense_Mutation p.R374C 0.29 deleterious(0) probably_damaging(0.997) TCGA-BR-8361-01 5 33984715 33984715 G A SLC45A2 5'UTR 0.32 TCGA-BR-8361-01 5 3599762 3599762 G A IRX1 Missense_Mutation p.D234N 0.24 deleterious(0.01) probably_damaging(0.959) TCGA-BR-8361-01 5 42719150 42719150 G A GHR Missense_Mutation p.C514Y 0.36 tolerated(1) benign(0.091) TCGA-BR-8361-01 5 5306817 5306817 C A ADAMTS16 Missense_Mutation p.S1129R 0.17 tolerated(0.58) benign(0.001) TCGA-BR-8361-01 5 55396104 55396104 T C ANKRD55 Missense_Mutation p.N584S 0.40 tolerated_low_confidence(0.98) benign(0.007) TCGA-BR-8361-01 5 57913586 57913586 A G RAB3C Silent p.L47L 0.34 TCGA-BR-8361-01 5 63256724 63256724 G T HTR1A Missense_Mutation p.L275M 0.27 tolerated(0.15) benign(0.258) TCGA-BR-8361-01 5 63257082 63257082 C T HTR1A Silent p.A155A 0.28 TCGA-BR-8361-01 5 63509644 63509644 G T RNF180 Missense_Mutation p.R164M 0.37 tolerated(0.08) benign(0.162) TCGA-BR-8361-01 5 6600045 6600045 G A NSUN2 Silent p.P766P 0.36 TCGA-BR-8361-01 5 6663023 6663023 G A SRD5A1 Silent p.A219A 0.34 TCGA-BR-8361-01 5 678052 678052 C - TPPP Frame_Shift_Del p.A42Qfs*44 0.34 TCGA-BR-8361-01 5 68492909 68492943 ACCTGGAGAAAATTAGCAGACAGTCTAGGTATGAT CCTGGAGAAAATTAGCAGACAGTCTAGGTATGA CENPH Splice_Site p.X115_splice 0.08 TCGA-BR-8361-01 5 70952787 70952787 T - MCCC2 3'UTR 0.19 TCGA-BR-8361-01 5 72144271 72144271 G A TNPO1 Silent p.Q25Q 0.51 TCGA-BR-8361-01 5 74651260 74651260 G A HMGCR Missense_Mutation p.R598H 0.30 deleterious(0) benign(0.226) TCGA-BR-8361-01 5 74877075 74877075 C T POLK Nonsense_Mutation p.R246* 0.28 TCGA-BR-8361-01 5 74880741 74880741 C T POLK Missense_Mutation p.H406Y 0.21 tolerated(0.36) benign(0.016) TCGA-BR-8361-01 5 74970164 74970164 T C POC5 3'UTR 0.32 TCGA-BR-8361-01 5 7706929 7706929 C T ADCY2 Silent p.G394G 0.31 TCGA-BR-8361-01 5 7889244 7889244 A G MTRR Missense_Mutation p.S422G 0.29 tolerated(0.62) benign(0.002) TCGA-BR-8361-01 5 80608440 80608441 - A ZCCHC9 Frame_Shift_Ins p.P261Tfs*7 0.23 TCGA-BR-8361-01 5 81614036 81614036 G A ATP6AP1L Missense_Mutation p.A198T 0.21 tolerated(0.32) benign(0.023) TCGA-BR-8361-01 5 82940335 82940335 C T HAPLN1 Missense_Mutation p.G208S 0.32 deleterious(0) probably_damaging(1) TCGA-BR-8361-01 5 881252 881252 C T BRD9 Missense_Mutation p.V338M 0.32 deleterious(0) possibly_damaging(0.893) TCGA-BR-8361-01 5 884147 884147 G A BRD9 Missense_Mutation p.T291M 0.26 deleterious(0.03) possibly_damaging(0.726) TCGA-BR-8361-01 5 90667188 90667188 A G ARRDC3 3'UTR 0.32 TCGA-BR-8361-01 5 9122889 9122889 G A SEMA5A Missense_Mutation p.H554Y 0.11 deleterious(0.03) benign(0.003) TCGA-BR-8361-01 5 94030769 94030769 A - ANKRD32 Frame_Shift_Del p.I977Ffs*2 0.16 TCGA-BR-8361-01 5 94764401 94764401 G A FAM81B Missense_Mutation p.A251T 0.27 tolerated(0.15) benign(0.194) TCGA-BR-8361-01 5 96121526 96121526 C T ERAP1 Missense_Mutation p.A637T 0.36 tolerated(0.13) possibly_damaging(0.65) TCGA-BR-8361-01 5 96139411 96139411 C T ERAP1 Silent p.T73T 0.33 TCGA-BR-8361-01 6 100006350 100006350 G T CCNC Intron 0.35 TCGA-BR-8361-01 6 102074496 102074496 G C GRIK2 Silent p.V175V 0.37 TCGA-BR-8361-01 6 10705022 10705022 T - PAK1IP1 Frame_Shift_Del p.F230Lfs*6 0.23 TCGA-BR-8361-01 6 107088273 107088273 A - QRSL1 Frame_Shift_Del p.K26Nfs*12 0.22 TCGA-BR-8361-01 6 108041744 108041744 T - SCML4 Intron 0.26 TCGA-BR-8361-01 6 10874192 10874192 G A GCM2 3'UTR 0.33 TCGA-BR-8361-01 6 112397206 112397206 T - TUBE1 Frame_Shift_Del p.K249Sfs*10 0.23 TCGA-BR-8361-01 6 116573986 116573986 G A TSPYL4 Nonsense_Mutation p.R396* 0.44 TCGA-BR-8361-01 6 118786459 118786459 A - CEP85L 3'UTR 0.25 TCGA-BR-8361-01 6 125402611 125402611 A G RNF217 Missense_Mutation p.M213V 0.32 tolerated(0.29) benign(0) TCGA-BR-8361-01 6 131481276 131481276 A - AKAP7 Frame_Shift_Del p.K79Rfs*21 0.31 TCGA-BR-8361-01 6 13470413 13470413 G A AL583828.1 Missense_Mutation p.R34C 0.28 possibly_damaging(0.835) TCGA-BR-8361-01 6 136560840 136560840 A T MTFR2 Silent p.P211P 0.35 TCGA-BR-8361-01 6 146865194 146865194 G A RAB32 Missense_Mutation p.A63T 0.26 deleterious(0.05) possibly_damaging(0.66) TCGA-BR-8361-01 6 149777984 149777984 C T ZC3H12D Silent p.P166P 0.22 TCGA-BR-8361-01 6 151694619 151694619 A G ZBTB2 Silent p.L52L 0.39 TCGA-BR-8361-01 6 152783813 152783813 T A SYNE1 Intron 0.26 TCGA-BR-8361-01 6 152826425 152826425 A G SYNE1 Missense_Mutation p.V230A 0.31 benign(0.026) TCGA-BR-8361-01 6 153078261 153078261 A C VIP Missense_Mutation p.E166D 0.35 tolerated_low_confidence(0.15) benign(0.006) TCGA-BR-8361-01 6 154480949 154480949 A C IPCEF1 3'UTR 0.32 TCGA-BR-8361-01 6 157405969 157405970 CT - ARID1B Frame_Shift_Del p.P739Cfs*23 0.12 TCGA-BR-8361-01 6 157511235 157511235 G T ARID1B Silent p.R1251R 0.30 TCGA-BR-8361-01 6 158900999 158900999 A G TULP4 Missense_Mutation p.T415A 0.27 deleterious(0) benign(0.338) TCGA-BR-8361-01 6 159652977 159652977 C A FNDC1 Missense_Mutation p.S478Y 0.42 deleterious(0.01) unknown(0) TCGA-BR-8361-01 6 166738057 166738057 T A SFT2D1 Missense_Mutation p.L126F 0.30 deleterious(0.01) benign(0.098) TCGA-BR-8361-01 6 17292146 17292146 C T RBM24 Silent p.A169A 0.26 TCGA-BR-8361-01 6 21000460 21000460 A T CDKAL1 Missense_Mutation p.E304D 0.13 tolerated(0.11) possibly_damaging(0.46) TCGA-BR-8361-01 6 21108632 21108632 A - CDKAL1 Frame_Shift_Del p.K414Sfs*28 0.18 TCGA-BR-8361-01 6 22290519 22290519 G A PRL Silent p.L126L 0.20 TCGA-BR-8361-01 6 22290529 22290529 A G PRL Silent p.P122P 0.18 TCGA-BR-8361-01 6 24178686 24178686 G A DCDC2 Missense_Mutation p.R400C 0.29 deleterious_low_confidence(0.05) benign(0.163) TCGA-BR-8361-01 6 25726703 25726703 C T HIST1H2AA Missense_Mutation p.R18H 0.22 deleterious_low_confidence(0.02) unknown(0) TCGA-BR-8361-01 6 26018017 26018017 A - HIST1H1A 5'UTR 0.22 TCGA-BR-8361-01 6 26188960 26188960 T C HIST1H4D 3'UTR 0.40 TCGA-BR-8361-01 6 27100268 27100268 A C HIST1H2BJ Missense_Mutation p.S88A 0.28 deleterious_low_confidence(0.01) benign(0.04) TCGA-BR-8361-01 6 27806403 27806403 T - HIST1H2BN 5'Flank 0.33 TCGA-BR-8361-01 6 29571394 29571394 G T GABBR1 Missense_Mutation p.L938M 0.25 tolerated_low_confidence(0.05) benign(0.275) TCGA-BR-8361-01 6 29577144 29577144 G - GABBR1 Frame_Shift_Del p.P574Qfs*32 0.26 TCGA-BR-8361-01 6 30166507 30166507 C T TRIM26 Missense_Mutation p.R125Q 0.40 deleterious(0.03) probably_damaging(0.954) TCGA-BR-8361-01 6 30314573 30314573 T C TRIM39-RPP21 Missense_Mutation p.S412P 0.35 tolerated_low_confidence(0.06) benign(0) TCGA-BR-8361-01 6 30570045 30570045 C - PPP1R10 Frame_Shift_Del p.G794Vfs*123 0.33 TCGA-BR-8361-01 6 30621048 30621048 T - DHX16 Frame_Shift_Del p.I1033* 0.22 TCGA-BR-8361-01 6 30864441 30864441 G A DDR1 Silent p.P556P 0.26 TCGA-BR-8361-01 6 30866732 30866732 G C DDR1 Missense_Mutation p.C846S 0.28 deleterious(0.01) benign(0.219) TCGA-BR-8361-01 6 30881130 30881130 G A GTF2H4 Nonsense_Mutation p.W394* 0.24 TCGA-BR-8361-01 6 31548437 31548437 C T LTB 3'UTR 0.20 TCGA-BR-8361-01 6 31602641 31602641 C - PRRC2A Frame_Shift_Del p.K1685Rfs*9 0.25 TCGA-BR-8361-01 6 31829118 31829119 - A NEU1 Frame_Shift_Ins p.Y155Lfs*23 0.21 TCGA-BR-8361-01 6 31852462 31852462 G - EHMT2 Frame_Shift_Del p.L855Cfs*36 0.32 TCGA-BR-8361-01 6 31915553 31915553 C T CFB Silent p.A733A 0.28 TCGA-BR-8361-01 6 31918490 31918490 T C CFB Silent p.Y1075Y 0.31 TCGA-BR-8361-01 6 31937383 31937383 G - SKIV2L Frame_Shift_Del p.A1213Qfs*5 0.32 TCGA-BR-8361-01 6 32023712 32023712 C A TNXB Nonsense_Mutation p.E2795* 0.23 TCGA-BR-8361-01 6 32823980 32823980 A G PSMB9 Silent p.A42A 0.10 TCGA-BR-8361-01 6 33255457 33255457 G A WDR46 Missense_Mutation p.A221V 0.34 deleterious(0.01) benign(0.242) TCGA-BR-8361-01 6 33259832 33259832 A G RGL2 3'UTR 0.30 TCGA-BR-8361-01 6 33287482 33287482 C G DAXX Missense_Mutation p.A539P 0.25 tolerated(0.11) possibly_damaging(0.898) TCGA-BR-8361-01 6 33638469 33638469 G A ITPR3 Silent p.A821A 0.23 TCGA-BR-8361-01 6 33657159 33657159 C A ITPR3 Missense_Mutation p.P2280H 0.27 tolerated(0.08) benign(0.18) TCGA-BR-8361-01 6 35201059 35201059 C T SCUBE3 Silent p.T231T 0.24 TCGA-BR-8361-01 6 35438059 35438060 CA - RPL10A Frame_Shift_Del p.H140Qfs*10 0.24 TCGA-BR-8361-01 6 36465583 36465583 A - STK38 Frame_Shift_Del p.F382Lfs*70 0.34 TCGA-BR-8361-01 6 36712850 36712850 G A CPNE5 Missense_Mutation p.A469V 0.33 tolerated(0.27) possibly_damaging(0.548) TCGA-BR-8361-01 6 37443948 37443948 C T CMTR1 Missense_Mutation p.R695W 0.25 deleterious(0.02) benign(0.059) TCGA-BR-8361-01 6 37605931 37605931 C T MDGA1 Intron 0.28 TCGA-BR-8361-01 6 39272337 39272337 G A KCNK17 Silent p.N149N 0.28 TCGA-BR-8361-01 6 39285600 39285600 C T KCNK16 Missense_Mutation p.A153T 0.58 tolerated(0.95) benign(0.001) TCGA-BR-8361-01 6 39507857 39507857 G A KIF6 Nonsense_Mutation p.R523* 0.27 TCGA-BR-8361-01 6 4068926 4068927 AG - FAM217A 3'UTR 0.22 TCGA-BR-8361-01 6 42979003 42979003 T C PPP2R5D Silent p.T596T 0.27 TCGA-BR-8361-01 6 43008323 43008323 A C CUL7 Missense_Mutation p.L1407R 0.07 deleterious(0) probably_damaging(1) TCGA-BR-8361-01 6 43573039 43573039 A G POLH Missense_Mutation p.T353A 0.21 tolerated(0.3) benign(0.005) TCGA-BR-8361-01 6 44201181 44201181 C T SLC29A1 Silent p.T429T 0.04 TCGA-BR-8361-01 6 44219919 44219921 AGA - HSP90AB1 In_Frame_Del p.K552del 0.26 TCGA-BR-8361-01 6 44275065 44275065 A G AARS2 Missense_Mutation p.Y321H 0.32 deleterious(0) probably_damaging(0.969) TCGA-BR-8361-01 6 44414464 44414464 C A CDC5L 3'UTR 0.34 TCGA-BR-8361-01 6 46849830 46849830 G A GPR116 Silent p.Y209Y 0.06 TCGA-BR-8361-01 6 49825088 49825088 A - CRISP1 Frame_Shift_Del p.L9Wfs*13 0.27 TCGA-BR-8361-01 6 50696967 50696967 C G TFAP2D Missense_Mutation p.N275K 0.29 deleterious(0) benign(0.369) TCGA-BR-8361-01 6 50811032 50811032 C T TFAP2B Missense_Mutation p.T437I 0.36 tolerated(0.15) benign(0.045) TCGA-BR-8361-01 6 52268987 52268987 T G PAQR8 Missense_Mutation p.S326A 0.36 tolerated(0.76) probably_damaging(0.978) TCGA-BR-8361-01 6 56471844 56471844 A T DST Intron 0.27 TCGA-BR-8361-01 6 56484660 56484660 G A DST Intron 0.35 TCGA-BR-8361-01 6 56716337 56716339 ATC - RP11-472M19.2 Intron 0.34 TCGA-BR-8361-01 6 57015648 57015649 - G ZNF451 Frame_Shift_Ins p.F916Lfs*15 0.21 TCGA-BR-8361-01 6 6167765 6167765 G A F13A1 Missense_Mutation p.R612C 0.36 deleterious(0) probably_damaging(0.986) TCGA-BR-8361-01 6 656489 656489 G T HUS1B Silent p.A152A 0.32 TCGA-BR-8361-01 6 656933 656933 G A HUS1B Silent p.R4R 0.26 TCGA-BR-8361-01 6 66205228 66205228 G A EYS Missense_Mutation p.R26W 0.32 tolerated_low_confidence(0.06) benign(0.001) TCGA-BR-8361-01 6 71566593 71566593 T G SMAP1 Missense_Mutation p.L274R 0.30 tolerated(0.57) benign(0.16) TCGA-BR-8361-01 6 7229845 7229845 C T RREB1 Missense_Mutation p.P505S 0.25 tolerated(0.09) probably_damaging(0.966) TCGA-BR-8361-01 6 74171522 74171523 - T MTO1 5'UTR 0.38 TCGA-BR-8361-01 6 74190493 74190493 A G MTO1 Missense_Mutation p.N409D 0.26 deleterious(0) probably_damaging(0.971) TCGA-BR-8361-01 6 75875409 75875409 G A COL12A1 Missense_Mutation p.R933C 0.21 probably_damaging(0.912) TCGA-BR-8361-01 6 80197138 80197138 C T LCA5 Silent p.S559S 0.22 TCGA-BR-8361-01 6 80656932 80656932 G A ELOVL4 Missense_Mutation p.T22M 0.21 tolerated(0.1) benign(0.075) TCGA-BR-8361-01 6 83074917 83074917 G A TPBG Missense_Mutation p.R80H 0.23 deleterious(0.01) probably_damaging(0.919) TCGA-BR-8361-01 6 83877689 83877689 A G DOPEY1 Missense_Mutation p.N2401D 0.43 tolerated(0.17) benign(0.009) TCGA-BR-8361-01 6 84233970 84233970 C T PRSS35 Silent p.D270D 0.16 TCGA-BR-8361-01 6 88769196 88769196 C T SPACA1 Missense_Mutation p.S167L 0.29 deleterious(0) possibly_damaging(0.736) TCGA-BR-8361-01 6 88853488 88853488 A T CNR1 3'UTR 0.25 TCGA-BR-8361-01 6 90383871 90383871 T C MDN1 Missense_Mutation p.D4400G 0.19 benign(0.015) TCGA-BR-8361-01 6 97001459 97001459 A G UFL1 3'UTR 0.33 TCGA-BR-8361-01 6 97626340 97626340 T - MMS22L Frame_Shift_Del p.A887Hfs*11 0.24 TCGA-BR-8361-01 6 9933054 9933054 G T OFCC1 Missense_Mutation p.L69I 0.31 deleterious(0) probably_damaging(0.997) TCGA-BR-8361-01 7 100274189 100274189 T C GNB2 Missense_Mutation p.L30P 0.21 deleterious(0) probably_damaging(0.98) TCGA-BR-8361-01 7 100276158 100276158 G A GNB2 Silent p.S279S 0.59 TCGA-BR-8361-01 7 100281714 100281714 C T GIGYF1 Silent p.P599P 0.26 TCGA-BR-8361-01 7 100283065 100283065 T C GIGYF1 Missense_Mutation p.K365R 0.19 tolerated(0.43) unknown(0) TCGA-BR-8361-01 7 101845106 101845106 C T CUX1 Silent p.A854A 0.38 TCGA-BR-8361-01 7 101847780 101847780 T C CUX1 Missense_Mutation p.L1017P 0.23 deleterious(0) unknown(0) TCGA-BR-8361-01 7 1028217 1028217 C T CYP2W1 Intron 0.55 TCGA-BR-8361-01 7 1049694 1049694 T C C7orf50 Missense_Mutation p.K72R 0.49 deleterious(0.02) probably_damaging(0.968) TCGA-BR-8361-01 7 106829851 106829851 G C HBP1 Missense_Mutation p.V294L 0.23 deleterious(0.01) possibly_damaging(0.703) TCGA-BR-8361-01 7 110763255 110763255 C T LRRN3 Nonsense_Mutation p.Q143* 0.33 TCGA-BR-8361-01 7 110763755 110763755 A G LRRN3 Silent p.P309P 0.29 TCGA-BR-8361-01 7 112423866 112423866 T G TMEM168 Missense_Mutation p.S339R 0.27 tolerated(0.19) possibly_damaging(0.883) TCGA-BR-8361-01 7 112472732 112472732 T C C7orf60 Splice_Site p.X158_splice 0.30 TCGA-BR-8361-01 7 117351447 117351448 - A CTTNBP2 3'UTR 0.27 TCGA-BR-8361-01 7 117431742 117431742 T C CTTNBP2 Missense_Mutation p.Q503R 0.04 deleterious(0.04) possibly_damaging(0.501) TCGA-BR-8361-01 7 120687010 120687010 C A CPED1 Missense_Mutation p.S168Y 0.28 deleterious(0.02) possibly_damaging(0.556) TCGA-BR-8361-01 7 121738915 121738915 C T AASS Missense_Mutation p.R471H 0.42 tolerated(0.65) benign(0.001) TCGA-BR-8361-01 7 122033572 122033572 G A CADPS2 Silent p.R937R 0.31 TCGA-BR-8361-01 7 122194676 122194676 T - CADPS2 Frame_Shift_Del p.N468Ifs*7 0.31 TCGA-BR-8361-01 7 122635118 122635118 G A TAS2R16 Silent p.L191L 0.27 TCGA-BR-8361-01 7 127447555 127447555 G A SND1 Silent p.L390L 0.30 TCGA-BR-8361-01 7 129856411 129856411 C A SSMEM1 3'UTR 0.39 TCGA-BR-8361-01 7 131895821 131895821 G T PLXNA4 Missense_Mutation p.L727I 0.28 tolerated(0.34) possibly_damaging(0.46) TCGA-BR-8361-01 7 131910964 131910964 G A PLXNA4 Silent p.F646F 0.35 TCGA-BR-8361-01 7 138978021 138978022 CT - UBN2 Frame_Shift_Del p.L1239Hfs*58 0.25 TCGA-BR-8361-01 7 142561853 142561853 G A EPHB6 Missense_Mutation p.G99R 0.29 deleterious(0) possibly_damaging(0.711) TCGA-BR-8361-01 7 142568664 142568664 C T EPHB6 3'UTR 0.33 TCGA-BR-8361-01 7 142622792 142622792 G C TRPV5 Missense_Mutation p.S318R 0.40 tolerated(0.06) possibly_damaging(0.461) TCGA-BR-8361-01 7 143092032 143092032 T G EPHA1 Missense_Mutation p.S741R 0.38 deleterious(0) probably_damaging(0.989) TCGA-BR-8361-01 7 143400268 143400268 G A FAM115C Missense_Mutation p.V61M 0.41 deleterious(0.01) benign(0.328) TCGA-BR-8361-01 7 144015344 144015344 G A OR2A1 Missense_Mutation p.A43T 0.32 tolerated(0.29) benign(0.001) TCGA-BR-8361-01 7 144075928 144075928 C T ARHGEF5 Silent p.D1535D 0.28 TCGA-BR-8361-01 7 148767405 148767407 AAG - ZNF786 3'UTR 0.38 TCGA-BR-8361-01 7 148768359 148768359 C T ZNF786 Missense_Mutation p.R502Q 0.35 tolerated(0.47) benign(0.041) TCGA-BR-8361-01 7 149521182 149521182 C T SSPO RNA 0.23 TCGA-BR-8361-01 7 149522390 149522390 G A SSPO RNA 0.41 TCGA-BR-8361-01 7 150171329 150171329 G A GIMAP8 Silent p.P304P 0.06 TCGA-BR-8361-01 7 150819824 150819824 G A AGAP3 Intron 0.30 TCGA-BR-8361-01 7 151791161 151791161 C T GALNT11 Intron 0.23 TCGA-BR-8361-01 7 151845154 151845154 G C KMT2C Missense_Mutation p.H4620D 0.30 probably_damaging(0.999) TCGA-BR-8361-01 7 151859695 151859695 G A KMT2C Missense_Mutation p.A3656V 0.35 benign(0.001) TCGA-BR-8361-01 7 151970816 151970816 T C KMT2C Missense_Mutation p.E329G 0.04 possibly_damaging(0.889) TCGA-BR-8361-01 7 157926632 157926632 A G PTPRN2 Silent p.P431P 0.34 TCGA-BR-8361-01 7 16445839 16445839 G A ISPD Silent p.H127H 0.16 TCGA-BR-8361-01 7 19156599 19156599 G A TWIST1 Missense_Mutation p.R116W 0.29 deleterious(0) probably_damaging(1) TCGA-BR-8361-01 7 20824269 20824269 C T SP8 Silent p.S389S 0.26 TCGA-BR-8361-01 7 20824665 20824665 C - SP8 Frame_Shift_Del p.L258Sfs*19 0.38 TCGA-BR-8361-01 7 2108877 2108877 G A MAD1L1 Silent p.H390H 0.50 TCGA-BR-8361-01 7 27824919 27824919 C T TAX1BP1 Silent p.T250T 0.33 TCGA-BR-8361-01 7 29546850 29546850 A - CHN2 Frame_Shift_Del p.K334Rfs*12 0.19 TCGA-BR-8361-01 7 30485816 30485816 A G NOD1 Silent p.S798S 0.29 TCGA-BR-8361-01 7 42007509 42007509 T A GLI3 Missense_Mutation p.S706C 0.26 deleterious(0) probably_damaging(0.998) TCGA-BR-8361-01 7 4308166 4308166 C T SDK1 3'UTR 0.17 TCGA-BR-8361-01 7 43601582 43601582 G T HECW1 3'UTR 0.33 TCGA-BR-8361-01 7 43688248 43688248 T C COA1 5'UTR 0.35 TCGA-BR-8361-01 7 44148743 44148743 G T AEBP1 Missense_Mutation p.E352D 0.33 tolerated_low_confidence(0.2) benign(0.004) TCGA-BR-8361-01 7 45018652 45018652 C T MYO1G 5'UTR 0.36 TCGA-BR-8361-01 7 45115623 45115623 G A CCM2 Silent p.A455A 0.32 TCGA-BR-8361-01 7 48412044 48412044 G A ABCA13 Missense_Mutation p.V3695I 0.32 probably_damaging(0.931) TCGA-BR-8361-01 7 48520733 48520733 C T ABCA13 Missense_Mutation p.A4359V 0.50 benign(0.002) TCGA-BR-8361-01 7 50513345 50513345 C T FIGNL1 Silent p.R547R 0.28 TCGA-BR-8361-01 7 50514882 50514882 C T FIGNL1 Missense_Mutation p.R35H 0.38 deleterious(0) probably_damaging(0.999) TCGA-BR-8361-01 7 65220825 65220825 T - SNORA22 3'Flank 0.15 TCGA-BR-8361-01 7 70229927 70229927 T A AUTS2 Silent p.P468P 0.25 TCGA-BR-8361-01 7 73246063 73246063 G - CLDN4 Frame_Shift_Del p.L180Cfs*115 0.32 TCGA-BR-8361-01 7 73933979 73933979 C T GTF2IRD1 Silent p.S314S 0.18 TCGA-BR-8361-01 7 75633097 75633097 G A STYXL1 Missense_Mutation p.R226C 0.33 deleterious(0.02) possibly_damaging(0.901) TCGA-BR-8361-01 7 76112200 76112200 G A DTX2 Missense_Mutation p.R215H 0.24 deleterious(0.02) probably_damaging(0.999) TCGA-BR-8361-01 7 77379032 77379032 G A RSBN1L Missense_Mutation p.R332Q 0.31 tolerated(0.08) benign(0.297) TCGA-BR-8361-01 7 80141143 80141143 C T GNAT3 Missense_Mutation p.V34I 0.26 tolerated(0.51) benign(0.065) TCGA-BR-8361-01 7 81591314 81591314 C T CACNA2D1 Silent p.T954T 0.26 TCGA-BR-8361-01 7 82585203 82585204 - T PCLO Frame_Shift_Ins p.T1689Nfs*6 0.18 TCGA-BR-8361-01 7 83634741 83634741 G A SEMA3A Missense_Mutation p.T425M 0.28 deleterious(0.02) probably_damaging(0.998) TCGA-BR-8361-01 7 87032525 87032525 G A ABCB4 Nonsense_Mutation p.R1194* 0.25 TCGA-BR-8361-01 7 87160650 87160650 T C ABCB1 Missense_Mutation p.Q882R 0.29 tolerated(0.24) benign(0.013) TCGA-BR-8361-01 7 87195486 87195486 A - ABCB1 Frame_Shift_Del p.F201Sfs*5 0.25 TCGA-BR-8361-01 7 91670110 91670110 G A AKAP9 Silent p.T1605T 0.35 TCGA-BR-8361-01 7 92146932 92146932 G A PEX1 Silent p.N299N 0.24 TCGA-BR-8361-01 7 92158877 92158877 G A RBM48 Missense_Mutation p.A67T 0.28 deleterious(0.03) benign(0.179) TCGA-BR-8361-01 7 93072952 93072952 T A CALCR Nonsense_Mutation p.K290* 0.25 TCGA-BR-8361-01 7 93519517 93519517 C - TFPI2 Frame_Shift_Del p.G68Afs*22 0.22 TCGA-BR-8361-01 7 94257549 94257549 T C SGCE Missense_Mutation p.T119A 0.15 deleterious(0.04) benign(0.028) TCGA-BR-8361-01 7 96318150 96318150 T - SHFM1 3'UTR 0.32 TCGA-BR-8361-01 7 97616448 97616448 T C OCM2 Missense_Mutation p.E72G 0.42 deleterious(0.04) benign(0.029) TCGA-BR-8361-01 7 99017169 99017169 C T BUD31 3'UTR 0.32 TCGA-BR-8361-01 7 99017597 99017597 C - ATP5J2-PTCD1 Frame_Shift_Del p.G748Afs*24 0.18 TCGA-BR-8361-01 7 99097689 99097689 G A ZNF394 Missense_Mutation p.R10C 0.14 tolerated(0.11) benign(0.217) TCGA-BR-8361-01 7 99226971 99226971 G A ZSCAN25 Silent p.A321A 0.32 TCGA-BR-8361-01 7 99695354 99695354 C T MCM7 Missense_Mutation p.E334K 0.21 tolerated(0.08) benign(0.212) TCGA-BR-8361-01 8 103663847 103663847 G A KLF10 Missense_Mutation p.T238M 0.31 tolerated(0.07) possibly_damaging(0.708) TCGA-BR-8361-01 8 10387198 10387198 C T PRSS55 Silent p.S112S 0.32 TCGA-BR-8361-01 8 10467297 10467297 G T RP1L1 Silent p.A1437A 0.32 TCGA-BR-8361-01 8 10469919 10469919 G T RP1L1 Silent p.T563T 0.32 TCGA-BR-8361-01 8 104897650 104897650 G C RIMS2 Missense_Mutation p.D275H 0.38 deleterious_low_confidence(0.02) possibly_damaging(0.881) TCGA-BR-8361-01 8 105001556 105001556 G A RIMS2 Missense_Mutation p.R984Q 0.21 deleterious_low_confidence(0.03) benign(0.406) TCGA-BR-8361-01 8 11058827 11058827 C T XKR6 Missense_Mutation p.G8S 0.50 tolerated_low_confidence(0.13) benign(0.113) TCGA-BR-8361-01 8 11418890 11418890 A G BLK Missense_Mutation p.E370G 0.33 tolerated(0.08) possibly_damaging(0.774) TCGA-BR-8361-01 8 12285239 12285239 C T FAM86B2 Silent p.K273K 0.19 TCGA-BR-8361-01 8 124346559 124346559 C T ATAD2 Missense_Mutation p.R1072H 0.19 tolerated(0.05) possibly_damaging(0.452) TCGA-BR-8361-01 8 125072767 125072767 G A FER1L6 Intron 0.46 TCGA-BR-8361-01 8 125072848 125072848 T - FER1L6 Frame_Shift_Del p.Q1016Rfs*11 0.32 TCGA-BR-8361-01 8 132052179 132052179 C T ADCY8 Missense_Mutation p.C134Y 0.36 tolerated_low_confidence(0.13) probably_damaging(0.962) TCGA-BR-8361-01 8 132968153 132968153 G A EFR3A Splice_Site p.X259_splice 0.26 TCGA-BR-8361-01 8 133790151 133790151 A - PHF20L1 Frame_Shift_Del p.K27Nfs*47 0.24 TCGA-BR-8361-01 8 133900585 133900585 G A TG Missense_Mutation p.V845I 0.25 tolerated(0.1) benign(0.037) TCGA-BR-8361-01 8 133923712 133923712 A G TG Missense_Mutation p.N1365D 0.30 deleterious(0) probably_damaging(0.989) TCGA-BR-8361-01 8 139164495 139164495 G A FAM135B Silent p.S741S 0.25 TCGA-BR-8361-01 8 140630920 140630920 C T KCNK9 Missense_Mutation p.G236R 0.33 deleterious(0.01) probably_damaging(0.993) TCGA-BR-8361-01 8 140715239 140715239 C T KCNK9 5'UTR 0.40 TCGA-BR-8361-01 8 142176445 142176445 G A DENND3 Silent p.S490S 0.24 TCGA-BR-8361-01 8 143956560 143956560 C T CYP11B1 Missense_Mutation p.R404H 0.28 tolerated(0.44) benign(0.001) TCGA-BR-8361-01 8 144998376 144998376 C A PLEC Missense_Mutation p.E2044D 0.17 unknown(0) TCGA-BR-8361-01 8 145512946 145512946 C T BOP1 Missense_Mutation p.G47S 0.23 tolerated_low_confidence(0.11) possibly_damaging(0.862) TCGA-BR-8361-01 8 145579095 145579095 A - FBXL6 3'UTR 0.15 TCGA-BR-8361-01 8 145617837 145617837 G A ADCK5 Missense_Mutation p.R482H 0.45 deleterious(0) probably_damaging(0.987) TCGA-BR-8361-01 8 145736585 145736585 C A MFSD3 3'UTR 0.21 TCGA-BR-8361-01 8 1514042 1514042 C T DLGAP2 Missense_Mutation p.P395L 0.31 tolerated(0.18) benign(0.068) TCGA-BR-8361-01 8 19363191 19363191 G A CSGALNACT1 Missense_Mutation p.T52M 0.18 tolerated(0.27) possibly_damaging(0.776) TCGA-BR-8361-01 8 20110994 20110994 G A LZTS1 Missense_Mutation p.H150Y 0.32 tolerated(1) probably_damaging(0.985) TCGA-BR-8361-01 8 22548122 22548122 G A EGR3 Missense_Mutation p.A343V 0.50 deleterious(0) probably_damaging(0.999) TCGA-BR-8361-01 8 27649496 27649496 G A ESCO2 Missense_Mutation p.R427H 0.60 tolerated(0.09) possibly_damaging(0.74) TCGA-BR-8361-01 8 36675180 36675180 C T KCNU1 Silent p.V336V 0.34 TCGA-BR-8361-01 8 37823668 37823668 G A ADRB3 Missense_Mutation p.A107V 0.48 tolerated(0.12) benign(0.053) TCGA-BR-8361-01 8 41530137 41530137 G A ANK1 Missense_Mutation p.R1652W 0.45 tolerated_low_confidence(0.07) possibly_damaging(0.761) TCGA-BR-8361-01 8 41552810 41552810 G A ANK1 Silent p.G1041G 0.28 TCGA-BR-8361-01 8 41834610 41834610 G - KAT6A Frame_Shift_Del p.R427Gfs*51 0.20 TCGA-BR-8361-01 8 41834758 41834758 T C KAT6A Silent p.S377S 0.24 TCGA-BR-8361-01 8 42252613 42252613 G A VDAC3 Missense_Mutation p.V27I 0.22 tolerated(0.42) benign(0.027) TCGA-BR-8361-01 8 53569498 53569498 T - RB1CC1 Frame_Shift_Del p.K964Sfs*13 0.20 TCGA-BR-8361-01 8 55542473 55542473 A G RP1 Missense_Mutation p.N2011D 0.34 tolerated(0.16) benign(0.004) TCGA-BR-8361-01 8 57876593 57876593 G A IMPAD1 Missense_Mutation p.P280L 0.25 tolerated_low_confidence(0.07) benign(0.009) TCGA-BR-8361-01 8 62555985 62555985 A G ASPH Silent p.S239S 0.21 TCGA-BR-8361-01 8 71041004 71041004 G A NCOA2 Missense_Mutation p.T1179M 0.32 deleterious(0.05) possibly_damaging(0.587) TCGA-BR-8361-01 8 76459914 76459914 A G HNF4G Missense_Mutation p.E117G 0.31 deleterious(0) possibly_damaging(0.682) TCGA-BR-8361-01 8 77763350 77763350 G T ZFHX4 Missense_Mutation p.R1398L 0.33 benign(0.433) TCGA-BR-8361-01 8 77767554 77767554 T - ZFHX4 Frame_Shift_Del p.F2800Lfs*34 0.23 TCGA-BR-8361-01 8 80523400 80523400 C T STMN2 5'UTR 0.09 TCGA-BR-8361-01 8 82359719 82359719 C T PMP2 5'UTR 0.29 TCGA-BR-8361-01 8 87498764 87498764 C T RMDN1 Silent p.E148E 0.19 TCGA-BR-8361-01 8 8998667 8998667 C T PPP1R3B Silent p.T165T 0.39 TCGA-BR-8361-01 8 90937493 90937493 T C OSGIN2 Silent p.P461P 0.35 TCGA-BR-8361-01 8 92020972 92020972 T - TMEM55A Frame_Shift_Del p.I180Sfs*21 0.25 TCGA-BR-8361-01 8 92988171 92988171 G A RUNX1T1 Missense_Mutation p.A448V 0.32 tolerated(0.24) benign(0.001) TCGA-BR-8361-01 8 99162863 99162863 A - POP1 Frame_Shift_Del p.R686Dfs*26 0.28 TCGA-BR-8361-01 8 99168334 99168334 G A POP1 Missense_Mutation p.C705Y 0.24 tolerated(1) benign(0.008) TCGA-BR-8361-01 8 99440690 99440690 C T KCNS2 Silent p.F161F 0.23 TCGA-BR-8361-01 9 101125082 101125082 C - GABBR2 Frame_Shift_Del p.G603Afs*4 0.28 TCGA-BR-8361-01 9 101151210 101151210 G T GABBR2 Silent p.L485L 0.28 TCGA-BR-8361-01 9 101304265 101304265 G A GABBR2 Missense_Mutation p.R174W 0.20 deleterious(0) probably_damaging(0.996) TCGA-BR-8361-01 9 101304280 101304281 - T GABBR2 Frame_Shift_Ins p.Y169Ifs*42 0.31 TCGA-BR-8361-01 9 101542559 101542559 C T ANKS6 Missense_Mutation p.R427Q 0.42 tolerated(0.14) benign(0.028) TCGA-BR-8361-01 9 104152754 104152754 A T MRPL50 Missense_Mutation p.S157R 0.28 tolerated(0.08) benign(0.178) TCGA-BR-8361-01 9 104390559 104390559 G C GRIN3A Missense_Mutation p.P826R 0.31 deleterious(0.02) possibly_damaging(0.723) TCGA-BR-8361-01 9 104449065 104449065 C A GRIN3A Missense_Mutation p.G373W 0.28 deleterious(0) probably_damaging(0.989) TCGA-BR-8361-01 9 106875619 106875619 C T SMC2 Missense_Mutation p.A426V 0.22 tolerated(0.21) benign(0.06) TCGA-BR-8361-01 9 109691637 109691637 A G ZNF462 Missense_Mutation p.H1815R 0.20 benign(0.036) TCGA-BR-8361-01 9 111625268 111625268 C T ACTL7A Silent p.G222G 0.32 TCGA-BR-8361-01 9 111631371 111631371 C T IKBKAP 3'UTR 0.26 TCGA-BR-8361-01 9 111663938 111663938 G A IKBKAP Silent p.D626D 0.31 TCGA-BR-8361-01 9 114246732 114246732 G C KIAA0368 Missense_Mutation p.R61G 0.43 deleterious_low_confidence(0) unknown(0) TCGA-BR-8361-01 9 114905861 114905861 C A SUSD1 Missense_Mutation p.G139V 0.33 deleterious(0.01) probably_damaging(0.945) TCGA-BR-8361-01 9 114985983 114985985 AAT - PTBP3 3'UTR 0.47 TCGA-BR-8361-01 9 115422464 115422464 C A KIAA1958 3'UTR 0.36 TCGA-BR-8361-01 9 115652937 115652937 G A SLC46A2 Missense_Mutation p.R9W 0.26 tolerated_low_confidence(1) benign(0) TCGA-BR-8361-01 9 115806416 115806416 T - ZFP37 Frame_Shift_Del p.N161Ifs*24 0.25 TCGA-BR-8361-01 9 116346500 116346500 G A RGS3 Silent p.S936S 0.30 TCGA-BR-8361-01 9 116930829 116930829 G A COL27A1 Missense_Mutation p.A332T 0.33 unknown(0) TCGA-BR-8361-01 9 116931439 116931439 A G COL27A1 Missense_Mutation p.K535R 0.34 unknown(0) TCGA-BR-8361-01 9 117848533 117848533 C A TNC Missense_Mutation p.G493W 0.35 deleterious(0) probably_damaging(1) TCGA-BR-8361-01 9 121929994 121929994 G A BRINP1 Missense_Mutation p.R552C 0.31 deleterious(0) probably_damaging(0.973) TCGA-BR-8361-01 9 123202115 123202115 A G CDK5RAP2 Missense_Mutation p.M1095T 0.22 tolerated(1) benign(0.012) TCGA-BR-8361-01 9 123952938 123952938 T - RAB14 Frame_Shift_Del p.I60* 0.16 TCGA-BR-8361-01 9 124074538 124074538 G A GSN Intron 0.26 TCGA-BR-8361-01 9 125861042 125861043 AA - RABGAP1 Frame_Shift_Del p.N930Qfs*6 0.25 TCGA-BR-8361-01 9 125865624 125865624 T C RABGAP1 3'UTR 0.35 TCGA-BR-8361-01 9 129458752 129458752 G A LMX1B 3'UTR 0.35 TCGA-BR-8361-01 9 130416073 130416073 C T STXBP1 Missense_Mutation p.T56M 0.48 deleterious(0) probably_damaging(0.963) TCGA-BR-8361-01 9 130506862 130506862 A G SH2D3C Missense_Mutation p.V594A 0.24 deleterious(0) probably_damaging(0.94) TCGA-BR-8361-01 9 131369952 131369952 C T SPTAN1 Silent p.T1372T 0.32 TCGA-BR-8361-01 9 131669843 131669843 C T LRRC8A Missense_Mutation p.L134F 0.29 tolerated(0.1) probably_damaging(0.995) TCGA-BR-8361-01 9 133506105 133506105 G A FUBP3 Missense_Mutation p.R403Q 0.29 deleterious(0) probably_damaging(0.985) TCGA-BR-8361-01 9 134387468 134387468 A G POMT1 Missense_Mutation p.T365A 0.20 deleterious(0) possibly_damaging(0.863) TCGA-BR-8361-01 9 134465325 134465325 G A RAPGEF1 Missense_Mutation p.R771C 0.30 deleterious(0) probably_damaging(0.996) TCGA-BR-8361-01 9 136282974 136282974 G A REXO4 5'UTR 0.21 TCGA-BR-8361-01 9 137593103 137593103 G A COL5A1 Missense_Mutation p.R193H 0.40 probably_damaging(1) TCGA-BR-8361-01 9 137622231 137622231 C T COL5A1 Silent p.G358G 0.34 TCGA-BR-8361-01 9 138378948 138378948 C T PPP1R26 Silent p.T864T 0.31 TCGA-BR-8361-01 9 138714328 138714328 C T CAMSAP1 Missense_Mutation p.D727N 0.24 tolerated(0.27) benign(0.048) TCGA-BR-8361-01 9 139369735 139369735 G A SEC16A Missense_Mutation p.P778L 0.37 tolerated(0.18) possibly_damaging(0.677) TCGA-BR-8361-01 9 139379255 139379255 C T C9orf163 Missense_Mutation p.H119Y 0.27 deleterious_low_confidence(0) benign(0.291) TCGA-BR-8361-01 9 139571989 139571989 G A AGPAT2 Nonsense_Mutation p.R68* 0.30 TCGA-BR-8361-01 9 139820357 139820357 C - TRAF2 3'UTR 0.12 TCGA-BR-8361-01 9 139904081 139904081 C T ABCA2 Missense_Mutation p.G2216S 0.46 deleterious(0) possibly_damaging(0.69) TCGA-BR-8361-01 9 139909954 139909954 G A ABCA2 Silent p.C1203C 0.28 TCGA-BR-8361-01 9 139912743 139912743 C T ABCA2 Missense_Mutation p.R627H 0.14 deleterious(0) probably_damaging(1) TCGA-BR-8361-01 9 140043558 140043558 C T GRIN1 Missense_Mutation p.A244V 0.25 deleterious(0) probably_damaging(0.936) TCGA-BR-8361-01 9 140349733 140349733 T C NSMF Missense_Mutation p.K246R 0.42 tolerated_low_confidence(0.07) possibly_damaging(0.755) TCGA-BR-8361-01 9 140361898 140361898 C A PNPLA7 Missense_Mutation p.K970N 0.45 deleterious(0) possibly_damaging(0.549) TCGA-BR-8361-01 9 17464503 17464503 G A CNTLN Missense_Mutation p.R1138Q 0.27 deleterious(0.04) probably_damaging(0.999) TCGA-BR-8361-01 9 18777073 18777073 C T ADAMTSL1 Missense_Mutation p.A949V 0.31 deleterious(0) probably_damaging(0.924) TCGA-BR-8361-01 9 19423933 19423933 A G ACER2 Missense_Mutation p.N61S 0.25 tolerated(0.22) benign(0.093) TCGA-BR-8361-01 9 20414337 20414337 G A MLLT3 Silent p.S169S 0.26 TCGA-BR-8361-01 9 20866997 20866997 C T FOCAD Missense_Mutation p.H726Y 0.06 deleterious(0) possibly_damaging(0.905) TCGA-BR-8361-01 9 20912931 20912931 A - FOCAD Frame_Shift_Del p.S931Afs*11 0.40 TCGA-BR-8361-01 9 20986390 20986390 G A FOCAD Missense_Mutation p.R1611H 0.32 tolerated(0.55) benign(0.001) TCGA-BR-8361-01 9 21350366 21350366 G A IFNA6 Missense_Mutation p.S174F 0.31 deleterious(0.04) possibly_damaging(0.516) TCGA-BR-8361-01 9 21350769 21350769 G T IFNA6 Missense_Mutation p.L40I 0.37 deleterious(0.03) benign(0.202) TCGA-BR-8361-01 9 21512164 21512164 C T MIR31 RNA 0.40 TCGA-BR-8361-01 9 2181665 2181665 A - SMARCA2 Frame_Shift_Del p.I1452* 0.22 TCGA-BR-8361-01 9 23705056 23705056 C T ELAVL2 Missense_Mutation p.R116H 0.34 deleterious(0) possibly_damaging(0.694) TCGA-BR-8361-01 9 2838446 2838446 T - KIAA0020 Frame_Shift_Del p.N21Tfs*45 0.19 TCGA-BR-8361-01 9 34996396 34996396 C T DNAJB5 Missense_Mutation p.R230C 0.24 deleterious(0.02) possibly_damaging(0.878) TCGA-BR-8361-01 9 35403977 35403977 C T UNC13B Nonsense_Mutation p.R1575* 0.33 TCGA-BR-8361-01 9 35708384 35708384 T C TLN1 Missense_Mutation p.Q1475R 0.34 tolerated(0.32) possibly_damaging(0.752) TCGA-BR-8361-01 9 40705475 40705475 C T SPATA31A3 Silent p.H1044H 0.28 TCGA-BR-8361-01 9 42368496 42368496 C T ANKRD20A2 Nonsense_Mutation p.R28* 0.25 TCGA-BR-8361-01 9 43627776 43627776 C T SPATA31A6 Missense_Mutation p.R304H 0.33 tolerated(0.61) benign(0.004) TCGA-BR-8361-01 9 4662506 4662506 T A PPAPDC2 Missense_Mutation p.L44H 0.64 tolerated(0.07) possibly_damaging(0.635) TCGA-BR-8361-01 9 69117748 69117748 G A PGM5P2 RNA 0.32 TCGA-BR-8361-01 9 70993145 70993145 A G PGM5 Missense_Mutation p.I98V 0.09 deleterious(0.01) possibly_damaging(0.573) TCGA-BR-8361-01 9 71606165 71606165 G A PIP5K1B Missense_Mutation p.V538I 0.14 tolerated_low_confidence(0.23) benign(0.016) TCGA-BR-8361-01 9 72067044 72067045 AC - APBA1 Frame_Shift_Del p.C654* 0.22 TCGA-BR-8361-01 9 74312964 74312964 C T TMEM2 Silent p.P1178P 0.29 TCGA-BR-8361-01 9 77112861 77112861 A G RORB 5'UTR 0.38 TCGA-BR-8361-01 9 77415270 77415270 G A TRPM6 Missense_Mutation p.S713L 0.35 deleterious(0) possibly_damaging(0.907) TCGA-BR-8361-01 9 79930196 79930197 - A VPS13A Frame_Shift_Ins p.D1483Rfs*17 0.19 TCGA-BR-8361-01 9 79931169 79931169 A - VPS13A Frame_Shift_Del p.N1572Mfs*6 0.26 TCGA-BR-8361-01 9 80031059 80031060 - A VPS13A 3'UTR 0.30 TCGA-BR-8361-01 9 84530528 84530528 C - SPATA31D5P RNA 0.23 TCGA-BR-8361-01 9 86495258 86495258 C T KIF27 Missense_Mutation p.R866K 0.22 tolerated(1) benign(0.001) TCGA-BR-8361-01 9 88624836 88624836 A C NAA35 Missense_Mutation p.H427P 0.34 deleterious(0.01) possibly_damaging(0.733) TCGA-BR-8361-01 9 93607823 93607823 G T SYK Silent p.R175R 0.28 TCGA-BR-8361-01 9 97325689 97325689 G A FBP2 Missense_Mutation p.H254Y 0.27 deleterious(0.01) possibly_damaging(0.9) TCGA-BR-8361-01 9 98678529 98678529 G A ERCC6L2 Missense_Mutation p.G335E 0.33 deleterious(0) probably_damaging(0.956) TCGA-BR-8361-01 9 99150630 99150630 G A ZNF367 Silent p.D314D 0.30 TCGA-BR-8361-01 9 99154788 99154788 C T ZNF367 Missense_Mutation p.R241H 0.24 deleterious(0) probably_damaging(0.967) TCGA-BR-8361-01 X 100603691 100603691 G A TIMM8A 5'UTR 0.19 TCGA-BR-8361-01 X 102884976 102884978 GGA - TCEAL1 In_Frame_Del p.E47del 0.42 TCGA-BR-8361-01 X 103411513 103411513 C - FAM199X Frame_Shift_Del p.E18Rfs*52 0.48 TCGA-BR-8361-01 X 103495265 103495265 G A ESX1 Missense_Mutation p.P289S 0.15 deleterious_low_confidence(0.01) unknown(0) TCGA-BR-8361-01 X 103495266 103495266 C G ESX1 Silent p.G288G 0.17 TCGA-BR-8361-01 X 104999216 104999216 A G IL1RAPL2 Missense_Mutation p.Q413R 0.26 tolerated(0.25) benign(0.334) TCGA-BR-8361-01 X 105150564 105150564 A - NRK Frame_Shift_Del p.R337Dfs*9 0.35 TCGA-BR-8361-01 X 106185767 106185767 T C MORC4 Missense_Mutation p.E785G 0.26 deleterious(0) probably_damaging(0.999) TCGA-BR-8361-01 X 107310351 107310351 C T VSIG1 Silent p.N169N 0.35 TCGA-BR-8361-01 X 108708382 108708382 C T GUCY2F Missense_Mutation p.E341K 0.42 tolerated(0.27) benign(0.119) TCGA-BR-8361-01 X 110574173 110574173 C T DCX Missense_Mutation p.R383H 0.07 deleterious(0.03) benign(0.135) TCGA-BR-8361-01 X 111022245 111022245 T C TRPC5 Missense_Mutation p.T734A 0.38 tolerated(0.23) benign(0.153) TCGA-BR-8361-01 X 111698264 111698264 T C ZCCHC16 Missense_Mutation p.L103P 0.38 deleterious(0.01) probably_damaging(0.961) TCGA-BR-8361-01 X 112025831 112025831 C T AMOT Missense_Mutation p.R726H 0.31 unknown(0) TCGA-BR-8361-01 X 112054516 112054516 C T AMOT Missense_Mutation p.E500K 0.30 unknown(0) TCGA-BR-8361-01 X 114384422 114384422 G A LRCH2 Missense_Mutation p.R555W 0.32 deleterious(0.01) probably_damaging(0.983) TCGA-BR-8361-01 X 114541562 114541562 T C LUZP4 3'UTR 0.31 TCGA-BR-8361-01 X 117817145 117817145 A G DOCK11 Missense_Mutation p.M2023V 0.23 deleterious(0) possibly_damaging(0.886) TCGA-BR-8361-01 X 118221820 118221820 G A KIAA1210 Nonsense_Mutation p.Q1125* 0.21 TCGA-BR-8361-01 X 118223448 118223448 A T KIAA1210 Missense_Mutation p.V582D 0.25 tolerated(0.18) benign(0.33) TCGA-BR-8361-01 X 118723881 118723881 C T NKRF Missense_Mutation p.A518T 0.23 deleterious(0.03) possibly_damaging(0.548) TCGA-BR-8361-01 X 118893435 118893435 G A SOWAHD Missense_Mutation p.A269T 0.24 tolerated(0.53) benign(0.041) TCGA-BR-8361-01 X 125685584 125685584 C A DCAF12L1 Missense_Mutation p.Q336H 0.27 deleterious(0.03) benign(0.043) TCGA-BR-8361-01 X 125685809 125685809 A G DCAF12L1 Silent p.S261S 0.29 TCGA-BR-8361-01 X 12704241 12704241 T - FRMPD4 Frame_Shift_Del p.F201Lfs*6 0.36 TCGA-BR-8361-01 X 12736566 12736566 T - FRMPD4 Frame_Shift_Del p.S1209Lfs*39 0.31 TCGA-BR-8361-01 X 12838801 12838801 T C PRPS2 Missense_Mutation p.L251P 0.44 deleterious(0) probably_damaging(0.994) TCGA-BR-8361-01 X 132439844 132439845 - G GPC4 Frame_Shift_Ins p.E371Rfs*11 0.30 TCGA-BR-8361-01 X 134713913 134713913 G A DDX26B Missense_Mutation p.A737T 0.17 tolerated(0.56) benign(0.001) TCGA-BR-8361-01 X 135429446 135429446 G A GPR112 Missense_Mutation p.G1194D 0.22 tolerated(0.08) possibly_damaging(0.541) TCGA-BR-8361-01 X 135574496 135574496 A G BRS3 Missense_Mutation p.T388A 0.15 tolerated(0.17) benign(0) TCGA-BR-8361-01 X 136112978 136112978 C T GPR101 Missense_Mutation p.A286T 0.41 tolerated(0.32) benign(0.012) TCGA-BR-8361-01 X 136649719 136649719 C T ZIC3 Missense_Mutation p.P290L 0.24 deleterious(0.02) possibly_damaging(0.881) TCGA-BR-8361-01 X 13792656 13792656 A G GPM6B Intron 0.21 TCGA-BR-8361-01 X 1409361 1409361 G T CSF2RA Missense_Mutation p.G202V 0.14 deleterious(0) probably_damaging(0.939) TCGA-BR-8361-01 X 140994072 140994072 T - MAGEC1 Frame_Shift_Del p.F295Lfs*13 0.24 TCGA-BR-8361-01 X 140996506 140996506 G A MAGEC1 Missense_Mutation p.A1106T 0.38 deleterious(0) unknown(0) TCGA-BR-8361-01 X 144906159 144906159 C T SLITRK2 Missense_Mutation p.A739V 0.29 tolerated(0.06) benign(0.011) TCGA-BR-8361-01 X 146342113 146342113 C T MIR509-1 RNA 0.23 TCGA-BR-8361-01 X 149905231 149905231 G A MTMR1 Silent p.T407T 0.34 TCGA-BR-8361-01 X 1508411 1508411 C T SLC25A6 Silent p.T107T 0.42 TCGA-BR-8361-01 X 152083707 152083707 G A ZNF185 Missense_Mutation p.A62T 0.17 tolerated(0.06) benign(0.105) TCGA-BR-8361-01 X 152113917 152113917 G A ZNF185 Missense_Mutation p.A471T 0.50 tolerated(1) benign(0.001) TCGA-BR-8361-01 X 152815582 152815582 T C ATP2B3 Missense_Mutation p.L554P 0.20 deleterious(0) probably_damaging(0.988) TCGA-BR-8361-01 X 153039725 153039725 C T PLXNB3 Missense_Mutation p.R1225C 0.62 deleterious(0.03) possibly_damaging(0.498) TCGA-BR-8361-01 X 153048555 153048555 C - SRPK3 Frame_Shift_Del p.S246Pfs*4 0.20 TCGA-BR-8361-01 X 153069306 153069306 G A PDZD4 Silent p.A604A 0.27 TCGA-BR-8361-01 X 153135051 153135051 A G L1CAM Silent p.S397S 0.47 TCGA-BR-8361-01 X 153220367 153220367 G T HCFC1 Silent p.G1161G 0.30 TCGA-BR-8361-01 X 153229698 153229698 G A HCFC1 Missense_Mutation p.T127M 0.24 tolerated(0.09) probably_damaging(0.999) TCGA-BR-8361-01 X 15339535 15339535 A - PIGA 3'UTR 0.25 TCGA-BR-8361-01 X 153541074 153541074 A G TKTL1 Missense_Mutation p.I272V 0.38 tolerated(0.17) benign(0.005) TCGA-BR-8361-01 X 153581382 153581382 A G FLNA Silent p.D2071D 0.13 TCGA-BR-8361-01 X 153741210 153741210 C T FAM3A Missense_Mutation p.V22M 0.21 tolerated(0.08) benign(0.012) TCGA-BR-8361-01 X 154464613 154464613 A G VBP1 Missense_Mutation p.D163G 0.29 tolerated(0.1) benign(0.096) TCGA-BR-8361-01 X 154528224 154528224 C T CLIC2 Splice_Site p.X56_splice 0.33 TCGA-BR-8361-01 X 155232627 155232627 T C IL9R Missense_Mutation p.C29R 0.21 tolerated(0.06) possibly_damaging(0.879) TCGA-BR-8361-01 X 155254985 155254985 G A WASH6P RNA 0.19 TCGA-BR-8361-01 X 18265925 18265926 GA - SCML2 Frame_Shift_Del p.P512* 0.38 TCGA-BR-8361-01 X 21675537 21675537 G A KLHL34 Missense_Mutation p.R124C 0.41 deleterious(0.03) probably_damaging(0.978) TCGA-BR-8361-01 X 23412229 23412229 G C PTCHD1 Missense_Mutation p.R865P 0.41 deleterious(0.01) possibly_damaging(0.52) TCGA-BR-8361-01 X 23953371 23953371 G A CXorf58 Missense_Mutation p.R205H 0.32 deleterious(0) probably_damaging(0.998) TCGA-BR-8361-01 X 2656273 2656273 C T CD99 Missense_Mutation p.R170W 0.42 deleterious(0) possibly_damaging(0.898) TCGA-BR-8361-01 X 2772036 2772036 G T GYG2 Missense_Mutation p.K86N 0.05 tolerated(0.14) benign(0.174) TCGA-BR-8361-01 X 27998805 27998805 T C DCAF8L1 Missense_Mutation p.D216G 0.23 deleterious(0.02) possibly_damaging(0.739) TCGA-BR-8361-01 X 2936680 2936680 G A ARSH Silent p.G290G 0.27 TCGA-BR-8361-01 X 30872538 30872538 G C TAB3 Missense_Mutation p.S415C 0.19 deleterious(0.04) benign(0.371) TCGA-BR-8361-01 X 3261860 3261860 C T MXRA5 Silent p.A5A 0.17 TCGA-BR-8361-01 X 35820609 35820609 C T MAGEB16 Missense_Mutation p.S99L 0.10 tolerated(0.2) benign(0.024) TCGA-BR-8361-01 X 37026823 37026823 C T FAM47C Missense_Mutation p.R114W 0.06 deleterious(0.04) benign(0.271) TCGA-BR-8361-01 X 38664436 38664437 - T MID1IP1 Frame_Shift_Ins p.A82Rfs*89 0.38 TCGA-BR-8361-01 X 40542153 40542153 C T MED14 Missense_Mutation p.R718H 0.28 deleterious(0) probably_damaging(0.994) TCGA-BR-8361-01 X 44928976 44928976 G - KDM6A Frame_Shift_Del p.A694Lfs*21 0.31 TCGA-BR-8361-01 X 45010795 45010795 T A CXorf36 3'UTR 0.32 TCGA-BR-8361-01 X 45010931 45010931 C T CXorf36 Missense_Mutation p.R423H 0.29 deleterious(0) probably_damaging(1) TCGA-BR-8361-01 X 47478909 47478909 G A SYN1 Silent p.G73G 0.62 TCGA-BR-8361-01 X 48319068 48319068 C T SLC38A5 Silent p.A345A 0.25 TCGA-BR-8361-01 X 48418771 48418771 G A TBC1D25 Missense_Mutation p.S492N 0.27 tolerated(0.24) benign(0.01) TCGA-BR-8361-01 X 53247013 53247013 G A KDM5C Missense_Mutation p.P163S 0.27 deleterious(0) probably_damaging(1) TCGA-BR-8361-01 X 54011506 54011506 G A PHF8 Silent p.L798L 0.30 TCGA-BR-8361-01 X 54496845 54496845 G A FGD1 Silent p.S235S 0.38 TCGA-BR-8361-01 X 54800553 54800553 A G ITIH6 Silent p.I288I 0.14 TCGA-BR-8361-01 X 55650057 55650057 A - FOXR2 5'UTR 0.36 TCGA-BR-8361-01 X 57620229 57620230 - AGC ZXDB In_Frame_Ins p.A585dup 0.22 TCGA-BR-8361-01 X 5811220 5811220 A G NLGN4X Missense_Mutation p.Y697H 0.33 deleterious(0) probably_damaging(0.986) TCGA-BR-8361-01 X 64721989 64721989 G C ZC3H12B Missense_Mutation p.V471L 0.34 deleterious(0.03) probably_damaging(0.995) TCGA-BR-8361-01 X 64722644 64722644 C - ZC3H12B Frame_Shift_Del p.Q691Sfs*7 0.36 TCGA-BR-8361-01 X 64749526 64749526 G A LAS1L Silent p.S249S 0.29 TCGA-BR-8361-01 X 65259904 65259904 G A VSIG4 5'UTR 0.19 TCGA-BR-8361-01 X 66766153 66766153 C A AR Missense_Mutation p.L389M 0.25 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-BR-8361-01 X 67293124 67293124 A G OPHN1 Silent p.P568P 0.19 TCGA-BR-8361-01 X 68725895 68725895 C T FAM155B Missense_Mutation p.A257V 0.36 deleterious(0) probably_damaging(0.971) TCGA-BR-8361-01 X 69720431 69720431 G A DLG3 Splice_Site p.X752_splice 0.20 TCGA-BR-8361-01 X 70348159 70348159 G A MED12 Missense_Mutation p.A1075T 0.34 possibly_damaging(0.83) TCGA-BR-8361-01 X 70823942 70823942 C T ACRC Missense_Mutation p.S272L 0.29 unknown(0) TCGA-BR-8361-01 X 7268078 7268079 AG - STS Frame_Shift_Del p.R512Kfs*13 0.42 TCGA-BR-8361-01 X 73744204 73744204 C A SLC16A2 Missense_Mutation p.L196M 0.27 tolerated(0.21) possibly_damaging(0.877) TCGA-BR-8361-01 X 74517420 74517420 T C UPRT Intron 0.17 TCGA-BR-8361-01 X 75004553 75004553 A C MAGEE2 Missense_Mutation p.S112A 0.21 tolerated(0.27) benign(0.001) TCGA-BR-8361-01 X 76814141 76814141 T C ATRX Missense_Mutation p.Q2168R 0.35 benign(0.379) TCGA-BR-8361-01 X 77111078 77111078 G A MAGT1 Missense_Mutation p.L260F 0.15 tolerated(1) benign(0.065) TCGA-BR-8361-01 X 77224949 77224949 C T PGAM4 Missense_Mutation p.V63M 0.26 deleterious(0) benign(0.445) TCGA-BR-8361-01 X 85769380 85769380 T G DACH2 Missense_Mutation p.L209R 0.29 deleterious(0) probably_damaging(0.973) TCGA-BR-8361-01 X 86890732 86890732 C A KLHL4 Missense_Mutation p.P628T 0.39 tolerated(0.07) possibly_damaging(0.831) TCGA-BR-8361-01 X 88008751 88008751 C A CPXCR1 Silent p.S112S 0.45 TCGA-BR-8361-01 X 90690585 90690585 C T PABPC5 Silent p.S3S 0.22 TCGA-BR-8361-01 X 90690988 90690988 G A PABPC5 Missense_Mutation p.V138I 0.28 deleterious(0.04) benign(0.429) TCGA-BR-8361-01 X 9864049 9864049 G A SHROOM2 Missense_Mutation p.D701N 0.43 deleterious(0.02) probably_damaging(0.972) TCGA-BR-8361-01 X 9905625 9905625 A G SHROOM2 Missense_Mutation p.M1347V 0.26 deleterious(0) probably_damaging(0.926) TCGA-BR-8361-01 X 99551563 99551563 C T PCDH19 Silent p.R1053R 0.21 TCGA-BR-8361-01 X 99662739 99662739 C T PCDH19 Missense_Mutation p.R286H 0.27 deleterious(0.01) probably_damaging(0.977) TCGA-BR-8363-01 10 101950684 101950684 A C CHUK Missense_Mutation p.L717R 0.14 tolerated(0.06) probably_damaging(0.945) TCGA-BR-8363-01 10 103899446 103899446 T C PPRC1 Missense_Mutation p.L394P 0.17 tolerated_low_confidence(0.09) possibly_damaging(0.903) TCGA-BR-8363-01 10 104170668 104170668 C T PSD Missense_Mutation p.G680R 0.15 deleterious(0.02) benign(0.092) TCGA-BR-8363-01 10 112039826 112039826 G A MXI1 Missense_Mutation p.R236H 0.15 tolerated(0.07) benign(0.067) TCGA-BR-8363-01 10 112356237 112356237 T C SMC3 Missense_Mutation p.V682A 0.20 tolerated(0.58) benign(0.046) TCGA-BR-8363-01 10 114428721 114428721 G A VTI1A Missense_Mutation p.G175E 0.14 deleterious(0) probably_damaging(0.992) TCGA-BR-8363-01 10 115489196 115489196 C T CASP7 Missense_Mutation p.A303V 0.08 deleterious(0) probably_damaging(0.992) TCGA-BR-8363-01 10 120810113 120810113 C T EIF3A Missense_Mutation p.R798H 0.20 deleterious(0) unknown(0) TCGA-BR-8363-01 10 121551118 121551118 G A INPP5F Silent p.T135T 0.09 TCGA-BR-8363-01 10 123844364 123844364 G - TACC2 Frame_Shift_Del p.E785Rfs*30 0.21 TCGA-BR-8363-01 10 123845448 123845448 C T TACC2 Nonsense_Mutation p.Q1145* 0.14 TCGA-BR-8363-01 10 124159891 124159891 G A PLEKHA1 Silent p.A77A 0.15 TCGA-BR-8363-01 10 124672308 124672308 A - FAM24A Frame_Shift_Del p.N54Ifs*48 0.11 TCGA-BR-8363-01 10 125539757 125539757 A G CPXM2 Missense_Mutation p.Y302H 0.18 deleterious(0.04) benign(0.232) TCGA-BR-8363-01 10 126185528 126185528 A G LHPP Splice_Site p.X156_splice 0.03 TCGA-BR-8363-01 10 129676547 129676547 G A CLRN3 Missense_Mutation p.L183F 0.14 deleterious(0.01) probably_damaging(1) TCGA-BR-8363-01 10 13276240 13276240 C T UCMA Missense_Mutation p.V7I 0.19 tolerated(0.34) benign(0.001) TCGA-BR-8363-01 10 132891365 132891365 C - TCERG1L 3'UTR 0.20 TCGA-BR-8363-01 10 135015099 135015099 A G KNDC1 Silent p.G1028G 0.12 TCGA-BR-8363-01 10 15120960 15120960 C T ACBD7 Missense_Mutation p.G31E 0.18 deleterious(0.02) possibly_damaging(0.529) TCGA-BR-8363-01 10 24833185 24833185 C A KIAA1217 Silent p.T1662T 0.15 TCGA-BR-8363-01 10 27459056 27459056 A - MASTL Frame_Shift_Del p.K391Nfs*12 0.13 TCGA-BR-8363-01 10 29821971 29821973 TCT - SVIL In_Frame_Del p.E441del 0.20 TCGA-BR-8363-01 10 30900913 30900913 C T LYZL2 Missense_Mutation p.D186N 0.14 deleterious(0.03) benign(0.001) TCGA-BR-8363-01 10 31610365 31610365 C T ZEB1 Intron 0.18 TCGA-BR-8363-01 10 32150382 32150382 G A ARHGAP12 Missense_Mutation p.R297C 0.14 deleterious(0.03) probably_damaging(0.998) TCGA-BR-8363-01 10 323168 323168 T G DIP2C 3'UTR 0.08 TCGA-BR-8363-01 10 32329381 32329381 T C KIF5B Silent p.V73V 0.21 TCGA-BR-8363-01 10 33094009 33094009 A G C10ORF68 Missense_Mutation p.Q298R 0.16 tolerated(0.78) benign(0.444) TCGA-BR-8363-01 10 33208930 33208930 G A ITGB1 Missense_Mutation p.T451M 0.15 deleterious(0) possibly_damaging(0.883) TCGA-BR-8363-01 10 43088290 43088290 C T ZNF33B Missense_Mutation p.S703N 0.14 tolerated(0.13) benign(0.068) TCGA-BR-8363-01 10 43089580 43089580 C T ZNF33B Missense_Mutation p.S273N 0.19 tolerated(0.86) benign(0) TCGA-BR-8363-01 10 45472929 45472929 C T C10orf10 Missense_Mutation p.A184T 0.16 tolerated(0.59) benign(0.014) TCGA-BR-8363-01 10 46961993 46961993 G A SYT15 Missense_Mutation p.L415F 0.04 deleterious(0) probably_damaging(0.999) TCGA-BR-8363-01 10 48414152 48414152 G A GDF2 Missense_Mutation p.T239M 0.19 tolerated(0.07) possibly_damaging(0.533) TCGA-BR-8363-01 10 55996585 55996585 A T PCDH15 Missense_Mutation p.V328D 0.16 tolerated(0.12) probably_damaging(0.922) TCGA-BR-8363-01 10 58118436 58118436 A T ZWINT Missense_Mutation p.F225I 0.15 tolerated(0.66) probably_damaging(0.943) TCGA-BR-8363-01 10 58118660 58118660 G A ZWINT Missense_Mutation p.R177C 0.09 deleterious(0.02) possibly_damaging(0.798) TCGA-BR-8363-01 10 61846455 61846455 C T ANK3 Missense_Mutation p.R1243H 0.15 probably_damaging(0.999) TCGA-BR-8363-01 10 6270174 6270174 G T PFKFB3 Intron 0.19 TCGA-BR-8363-01 10 64573145 64573145 T G EGR2 Missense_Mutation p.K418T 0.18 deleterious(0) possibly_damaging(0.727) TCGA-BR-8363-01 10 67680138 67680138 T - CTNNA3 Frame_Shift_Del p.I880Sfs*7 0.14 TCGA-BR-8363-01 10 69785320 69785320 A G HERC4 Silent p.T297T 0.15 TCGA-BR-8363-01 10 72298102 72298102 C T PALD1 Missense_Mutation p.P464S 0.15 tolerated(0.5) benign(0.287) TCGA-BR-8363-01 10 7327741 7327741 A C SFMBT2 Intron 0.15 TCGA-BR-8363-01 10 74684343 74684343 C T OIT3 Silent p.C436C 0.09 TCGA-BR-8363-01 10 75051761 75051761 A G TTC18 Silent p.R664R 0.23 TCGA-BR-8363-01 10 75394400 75394400 C T MYOZ1 Missense_Mutation p.G115D 0.14 tolerated(0.11) benign(0.38) TCGA-BR-8363-01 10 75407589 75407589 G - SYNPO2L Frame_Shift_Del p.S608Afs*70 0.14 TCGA-BR-8363-01 10 78651329 78651329 C T KCNMA1 Missense_Mutation p.R1082H 0.16 deleterious(0) possibly_damaging(0.896) TCGA-BR-8363-01 10 78846314 78846314 G A KCNMA1 Nonsense_Mutation p.R458* 0.13 TCGA-BR-8363-01 10 81056357 81056357 C T ZMIZ1 Missense_Mutation p.P454S 0.06 benign(0.05) TCGA-BR-8363-01 10 8115780 8115780 A - GATA3 Frame_Shift_Del p.V379Cfs*26 0.17 TCGA-BR-8363-01 10 84745405 84745405 G A NRG3 3'Flank 0.16 TCGA-BR-8363-01 10 88260130 88260130 T C WAPAL Silent p.P290P 0.15 TCGA-BR-8363-01 10 91477457 91477457 T C KIF20B Silent p.L417L 0.14 TCGA-BR-8363-01 10 93608141 93608141 C T TNKS2 Missense_Mutation p.A787V 0.14 deleterious(0.02) probably_damaging(0.994) TCGA-BR-8363-01 10 93773501 93773501 T C BTAF1 Silent p.A1463A 0.13 TCGA-BR-8363-01 10 96066371 96066371 G A PLCE1 Missense_Mutation p.R1937H 0.19 deleterious(0) probably_damaging(1) TCGA-BR-8363-01 10 97174285 97174285 G A SORBS1 Missense_Mutation p.S259L 0.23 tolerated_low_confidence(0.39) benign(0.003) TCGA-BR-8363-01 11 102195491 102195491 A - BIRC3 Frame_Shift_Del p.K85Sfs*15 0.19 TCGA-BR-8363-01 11 102593283 102593283 G A MMP8 Missense_Mutation p.T75M 0.15 deleterious(0) probably_damaging(0.997) TCGA-BR-8363-01 11 102988484 102988484 C T DYNC2H1 Silent p.V297V 0.18 TCGA-BR-8363-01 11 103194690 103194690 G A DYNC2H1 Missense_Mutation p.R4011H 0.22 probably_damaging(0.969) TCGA-BR-8363-01 11 103270461 103270461 T C DYNC2H1 Missense_Mutation p.I4083T 0.25 possibly_damaging(0.823) TCGA-BR-8363-01 11 103797725 103797725 C T PDGFD Missense_Mutation p.R301H 0.14 deleterious(0) probably_damaging(1) TCGA-BR-8363-01 11 108114817 108114817 T - ATM Frame_Shift_Del p.S214Pfs*16 0.20 TCGA-BR-8363-01 11 108544239 108544239 A - DDX10 Frame_Shift_Del p.T80Hfs*2 0.28 TCGA-BR-8363-01 11 111425991 111425991 A - LAYN Frame_Shift_Del p.T222Hfs*10 0.16 TCGA-BR-8363-01 11 114400914 114400914 T A NXPE1 Missense_Mutation p.E130D 0.19 deleterious(0.01) probably_damaging(0.927) TCGA-BR-8363-01 11 115088664 115088664 T G CADM1 Missense_Mutation p.T257P 0.14 tolerated(1) benign(0.049) TCGA-BR-8363-01 11 118047107 118047107 G T SCN2B Missense_Mutation p.L14I 0.11 tolerated(0.29) benign(0.086) TCGA-BR-8363-01 11 119044381 119044381 C - NLRX1 Frame_Shift_Del p.P143Hfs*81 0.24 TCGA-BR-8363-01 11 12281433 12281433 G A MICAL2 Missense_Mutation p.G1108D 0.15 tolerated_low_confidence(0.3) benign(0.011) TCGA-BR-8363-01 11 123909037 123909037 G A OR10G7 Silent p.I224I 0.16 TCGA-BR-8363-01 11 124007944 124007944 T C VWA5A Silent p.A616A 0.15 TCGA-BR-8363-01 11 124765380 124765380 C T ROBO4 Missense_Mutation p.V337M 0.16 tolerated(0.12) possibly_damaging(0.595) TCGA-BR-8363-01 11 124908371 124908371 G A CCDC15 Missense_Mutation p.R819K 0.19 tolerated(0.11) benign(0.254) TCGA-BR-8363-01 11 125359542 125359542 G A FEZ1 Silent p.S44S 0.13 TCGA-BR-8363-01 11 125889551 125889551 G A CDON Silent p.R153R 0.18 TCGA-BR-8363-01 11 126133915 126133915 A G SRPR Missense_Mutation p.Y605H 0.17 deleterious(0.03) probably_damaging(1) TCGA-BR-8363-01 11 128774338 128774338 C - C11orf45 Frame_Shift_Del p.V42* 0.15 TCGA-BR-8363-01 11 132184590 132184590 G C NTM Missense_Mutation p.M309I 0.17 tolerated(1) benign(0) TCGA-BR-8363-01 11 133714492 133714492 A G SPATA19 Missense_Mutation p.I60T 0.10 tolerated(0.56) benign(0.001) TCGA-BR-8363-01 11 134126459 134126459 G A ACAD8 Missense_Mutation p.E43K 0.14 deleterious(0.01) benign(0.428) TCGA-BR-8363-01 11 14880717 14880717 T - PDE3B Frame_Shift_Del p.L885* 0.18 TCGA-BR-8363-01 11 19955107 19955107 C T NAV2 Silent p.S462S 0.17 TCGA-BR-8363-01 11 2424091 2424091 G A TSSC4 Silent p.T76T 0.32 TCGA-BR-8363-01 11 27114773 27114773 A G BBOX1 Silent p.L131L 0.13 TCGA-BR-8363-01 11 27679518 27679519 - C BDNF Frame_Shift_Ins p.I281Hfs*24 0.17 TCGA-BR-8363-01 11 32953671 32953671 G A QSER1 Silent p.Q160Q 0.17 TCGA-BR-8363-01 11 33358692 33358693 - T HIPK3 Frame_Shift_Ins p.C434Lfs*20 0.09 TCGA-BR-8363-01 11 34093453 34093453 C T CAPRIN1 Silent p.A95A 0.11 TCGA-BR-8363-01 11 3423918 3423918 G A TSSC2 RNA 0.14 TCGA-BR-8363-01 11 34478308 34478308 T G CAT Missense_Mutation p.F334V 0.21 deleterious(0) probably_damaging(0.979) TCGA-BR-8363-01 11 35336618 35336618 T C SLC1A2 Missense_Mutation p.M88V 0.11 deleterious(0) probably_damaging(0.93) TCGA-BR-8363-01 11 3697439 3697439 G A NUP98 Missense_Mutation p.R1785C 0.14 deleterious(0) possibly_damaging(0.711) TCGA-BR-8363-01 11 4566596 4566596 A C OR52M1 Missense_Mutation p.Q59P 0.20 deleterious(0.02) possibly_damaging(0.623) TCGA-BR-8363-01 11 46637860 46637860 G A HARBI1 5'UTR 0.20 TCGA-BR-8363-01 11 46741326 46741326 C T F2 Missense_Mutation p.R52C 0.29 deleterious(0) possibly_damaging(0.903) TCGA-BR-8363-01 11 4825712 4825712 C T OR52R1 5'Flank 0.13 TCGA-BR-8363-01 11 4945416 4945416 A G OR51G1 Missense_Mutation p.C52R 0.08 tolerated(0.48) benign(0) TCGA-BR-8363-01 11 5011865 5011865 G C MMP26 Missense_Mutation p.V120L 0.15 deleterious(0) possibly_damaging(0.7) TCGA-BR-8363-01 11 5510494 5510494 C T OR52D1 Silent p.G186G 0.18 TCGA-BR-8363-01 11 55681486 55681486 A G OR5W2 Silent p.D191D 0.15 TCGA-BR-8363-01 11 55761559 55761559 A G OR5F1 Silent p.S181S 0.18 TCGA-BR-8363-01 11 56949628 56949628 C T LRRC55 Silent p.C87C 0.15 TCGA-BR-8363-01 11 57182520 57182520 G A SLC43A3 Missense_Mutation p.R277W 0.10 tolerated(0.32) benign(0.004) TCGA-BR-8363-01 11 57563079 57563079 C A CTNND1 Missense_Mutation p.P100T 0.19 deleterious(0.03) benign(0.4) TCGA-BR-8363-01 11 58206945 58206945 C T OR5B12 Missense_Mutation p.R227H 0.13 tolerated_low_confidence(1) benign(0.007) TCGA-BR-8363-01 11 5878343 5878343 C T OR52E8 Missense_Mutation p.S197N 0.10 tolerated(0.52) benign(0.107) TCGA-BR-8363-01 11 58891683 58891683 C T FAM111B Missense_Mutation p.T38I 0.10 tolerated(0.07) possibly_damaging(0.694) TCGA-BR-8363-01 11 59190023 59190023 A T OR5A2 Missense_Mutation p.V135D 0.19 deleterious(0.03) benign(0.12) TCGA-BR-8363-01 11 59481150 59481150 T C OR10V1 Missense_Mutation p.T57A 0.18 deleterious(0.01) benign(0.156) TCGA-BR-8363-01 11 60670301 60670301 C T PRPF19 Missense_Mutation p.R100H 0.08 deleterious(0) probably_damaging(0.998) TCGA-BR-8363-01 11 61081893 61081893 C T DDB1 Silent p.E492E 0.14 TCGA-BR-8363-01 11 61111667 61111667 C T DAK Silent p.L388L 0.17 TCGA-BR-8363-01 11 61533551 61533551 C T MYRF Missense_Mutation p.R86C 0.14 deleterious(0) possibly_damaging(0.677) TCGA-BR-8363-01 11 62377133 62377133 C - EML3 Frame_Shift_Del p.G201Afs*16 0.15 TCGA-BR-8363-01 11 62401842 62401842 G A GANAB Missense_Mutation p.S189L 0.04 deleterious(0.02) possibly_damaging(0.778) TCGA-BR-8363-01 11 62416784 62416784 A G INTS5 Silent p.A256A 0.12 TCGA-BR-8363-01 11 6244441 6244441 A G FAM160A2 Missense_Mutation p.Y269H 0.16 deleterious(0) probably_damaging(0.998) TCGA-BR-8363-01 11 62458891 62458891 T C BSCL2 Missense_Mutation p.Y289C 0.15 deleterious(0) probably_damaging(0.964) TCGA-BR-8363-01 11 62751957 62751957 C T SLC22A6 Missense_Mutation p.R69Q 0.20 tolerated(0.34) benign(0.001) TCGA-BR-8363-01 11 64126901 64126901 T C RPS6KA4 Missense_Mutation p.L36P 0.18 deleterious(0) probably_damaging(0.988) TCGA-BR-8363-01 11 64360339 64360339 G A SLC22A12 Missense_Mutation p.G164D 0.09 deleterious(0) probably_damaging(0.983) TCGA-BR-8363-01 11 64523002 64523002 G T PYGM Missense_Mutation p.P230H 0.17 deleterious(0) probably_damaging(0.992) TCGA-BR-8363-01 11 64601436 64601436 T A CDC42BPG Silent p.S809S 0.20 TCGA-BR-8363-01 11 64940437 64940437 G A SPDYC Missense_Mutation p.V267I 0.15 tolerated(0.9) benign(0.003) TCGA-BR-8363-01 11 65167304 65167304 G A FRMD8 Missense_Mutation p.V301M 0.14 deleterious(0) probably_damaging(0.976) TCGA-BR-8363-01 11 65271041 65271041 A G MALAT1 RNA 0.17 TCGA-BR-8363-01 11 65272060 65272060 T - MALAT1 RNA 0.13 TCGA-BR-8363-01 11 65314283 65314283 C - LTBP3 Frame_Shift_Del p.G739Afs*7 0.18 TCGA-BR-8363-01 11 65375801 65375801 G A MAP3K11 Silent p.Y286Y 0.15 TCGA-BR-8363-01 11 65392940 65392940 G A PCNXL3 Missense_Mutation p.E1032K 0.18 deleterious(0) possibly_damaging(0.475) TCGA-BR-8363-01 11 65487870 65487870 C T RNASEH2C Missense_Mutation p.R64Q 0.16 deleterious(0) probably_damaging(1) TCGA-BR-8363-01 11 65767776 65767776 T C EIF1AD Missense_Mutation p.R29G 0.24 deleterious(0) possibly_damaging(0.883) TCGA-BR-8363-01 11 66099764 66099764 G A RIN1 Missense_Mutation p.R779W 0.04 deleterious_low_confidence(0.01) possibly_damaging(0.689) TCGA-BR-8363-01 11 66136983 66136983 G T SLC29A2 Silent p.A44A 0.18 TCGA-BR-8363-01 11 6638276 6638276 C T TPP1 Missense_Mutation p.R206H 0.15 deleterious(0) probably_damaging(0.997) TCGA-BR-8363-01 11 66436507 66436507 C T RBM4B Missense_Mutation p.R223Q 0.16 deleterious(0.02) possibly_damaging(0.447) TCGA-BR-8363-01 11 66616805 66616805 C T PC Missense_Mutation p.A1062T 0.18 tolerated(0.09) benign(0.012) TCGA-BR-8363-01 11 67051736 67051736 C T ADRBK1 Missense_Mutation p.R516W 0.17 deleterious(0) probably_damaging(1) TCGA-BR-8363-01 11 67163272 67163272 C T RAD9A Missense_Mutation p.R179C 0.13 deleterious(0) probably_damaging(1) TCGA-BR-8363-01 11 68201164 68201164 C T LRP5 Silent p.C1286C 0.12 TCGA-BR-8363-01 11 70033855 70033855 G A ANO1 Missense_Mutation p.M902I 0.11 deleterious(0.04) benign(0.326) TCGA-BR-8363-01 11 73076913 73076913 C T ARHGEF17 Silent p.H1972H 0.14 TCGA-BR-8363-01 11 76751257 76751257 G A B3GNT6 Missense_Mutation p.G221D 0.17 deleterious(0.01) possibly_damaging(0.874) TCGA-BR-8363-01 11 78412903 78412903 C T TENM4 Silent p.E1585E 0.20 TCGA-BR-8363-01 11 85411568 85411568 C T SYTL2 Silent p.E1119E 0.16 TCGA-BR-8363-01 11 85437014 85437014 T G SYTL2 Missense_Mutation p.K162N 0.16 deleterious(0.01) possibly_damaging(0.667) TCGA-BR-8363-01 11 85975274 85975274 T C EED Missense_Mutation p.V232A 0.18 tolerated(0.13) benign(0.27) TCGA-BR-8363-01 11 86662374 86662374 G A FZD4 Missense_Mutation p.A475V 0.15 deleterious(0.01) benign(0.309) TCGA-BR-8363-01 11 8715517 8715517 G A ST5 3'UTR 0.14 TCGA-BR-8363-01 11 88781072 88781072 G A GRM5 5'UTR 0.12 TCGA-BR-8363-01 11 89177323 89177323 C T NOX4 Missense_Mutation p.A143T 0.12 tolerated(0.63) benign(0.155) TCGA-BR-8363-01 11 92533963 92533963 A G FAT3 Missense_Mutation p.D2595G 0.13 probably_damaging(0.999) TCGA-BR-8363-01 11 93471428 93471428 T A TAF1D Silent p.T102T 0.14 TCGA-BR-8363-01 11 94197320 94197320 A G MRE11A Missense_Mutation p.I395T 0.11 deleterious(0) possibly_damaging(0.639) TCGA-BR-8363-01 11 9430059 9430059 A G IPO7 Missense_Mutation p.T65A 0.12 tolerated(0.17) benign(0.021) TCGA-BR-8363-01 11 95580894 95580894 C T MTMR2 Nonsense_Mutation p.W388* 0.13 TCGA-BR-8363-01 11 99944909 99944909 A C CNTN5 Missense_Mutation p.K488T 0.11 deleterious(0) benign(0.395) TCGA-BR-8363-01 12 100042149 100042149 C T FAM71C Missense_Mutation p.A66V 0.29 tolerated(1) benign(0.007) TCGA-BR-8363-01 12 101493484 101493484 A G ANO4 Missense_Mutation p.E677G 0.11 deleterious(0) probably_damaging(0.92) TCGA-BR-8363-01 12 102301990 102301990 C T DRAM1 Silent p.D123D 0.04 TCGA-BR-8363-01 12 102468114 102468114 T C NUP37 3'UTR 0.41 TCGA-BR-8363-01 12 103310938 103310938 T - PAH 5'UTR 0.26 TCGA-BR-8363-01 12 103352344 103352344 T G ASCL1 Missense_Mutation p.F108V 0.19 deleterious(0.04) benign(0.041) TCGA-BR-8363-01 12 104513476 104513477 - T NFYB 3'UTR 0.19 TCGA-BR-8363-01 12 105151303 105151303 A C CHST11 Missense_Mutation p.T261P 0.22 tolerated(0.08) benign(0.058) TCGA-BR-8363-01 12 106770229 106770229 G A POLR3B Splice_Site p.X166_splice 0.11 TCGA-BR-8363-01 12 106995084 106995084 G A RFX4 Silent p.A10A 0.15 TCGA-BR-8363-01 12 108169429 108169429 G A ASCL4 Missense_Mutation p.R146H 0.31 tolerated(0.17) benign(0.005) TCGA-BR-8363-01 12 108929213 108929213 C T SART3 Missense_Mutation p.R493Q 0.13 deleterious(0) probably_damaging(0.991) TCGA-BR-8363-01 12 10959322 10959322 A - TAS2R8 Frame_Shift_Del p.F86Lfs*10 0.14 TCGA-BR-8363-01 12 109605836 109605836 G A ACACB Missense_Mutation p.A308T 0.10 deleterious(0) probably_damaging(0.998) TCGA-BR-8363-01 12 109685505 109685505 C T ACACB Missense_Mutation p.S1889F 0.17 deleterious(0.02) probably_damaging(0.998) TCGA-BR-8363-01 12 109936110 109936110 C T UBE3B Missense_Mutation p.R298C 0.16 deleterious(0.02) benign(0.004) TCGA-BR-8363-01 12 110293513 110293513 G T GLTP Missense_Mutation p.H120N 0.28 tolerated(0.94) benign(0.001) TCGA-BR-8363-01 12 112120995 112120995 G A BRAP Nonsense_Mutation p.R67* 0.30 TCGA-BR-8363-01 12 112150444 112150444 T A ACAD10 Missense_Mutation p.L309Q 0.15 deleterious(0) probably_damaging(0.999) TCGA-BR-8363-01 12 112280504 112280504 T G MAPKAPK5 5'UTR 0.25 TCGA-BR-8363-01 12 112498103 112498103 T C NAA25 Missense_Mutation p.H473R 0.28 deleterious(0.02) probably_damaging(0.998) TCGA-BR-8363-01 12 11338670 11338670 G A TAS2R42 Nonsense_Mutation p.R292* 0.14 TCGA-BR-8363-01 12 113603672 113603672 G A DDX54 Missense_Mutation p.S527L 0.25 deleterious(0) probably_damaging(0.977) TCGA-BR-8363-01 12 118636898 118636898 G A TAOK3 Silent p.D384D 0.27 TCGA-BR-8363-01 12 118637023 118637023 T C TAOK3 Missense_Mutation p.S343G 0.23 tolerated(0.11) possibly_damaging(0.766) TCGA-BR-8363-01 12 119592100 119592100 C T SRRM4 Nonsense_Mutation p.R482* 0.24 TCGA-BR-8363-01 12 119773056 119773056 G A CCDC60 Silent p.S25S 0.31 TCGA-BR-8363-01 12 120535134 120535137 TCTT - RAB35 Frame_Shift_Del p.K173Tfs*15 0.18 TCGA-BR-8363-01 12 121088393 121088393 C T CABP1 Intron 0.13 TCGA-BR-8363-01 12 121206174 121206174 G A SPPL3 Missense_Mutation p.R243C 0.15 deleterious(0.03) probably_damaging(0.91) TCGA-BR-8363-01 12 122750936 122750936 T C VPS33A Missense_Mutation p.Y7C 0.12 tolerated(0.08) benign(0.001) TCGA-BR-8363-01 12 123200107 123200107 C T HCAR3 3'UTR 0.13 TCGA-BR-8363-01 12 123480010 123480010 T C PITPNM2 Silent p.Q660Q 0.15 TCGA-BR-8363-01 12 123889559 123889559 C T SETD8 Silent p.Y262Y 0.28 TCGA-BR-8363-01 12 124256216 124256217 AA - DNAH10 Frame_Shift_Del p.K62Rfs*50 0.25 TCGA-BR-8363-01 12 124267714 124267714 C T DNAH10 Missense_Mutation p.A240V 0.18 benign(0.001) TCGA-BR-8363-01 12 124330559 124330559 G A DNAH10 Missense_Mutation p.R1773Q 0.28 probably_damaging(0.991) TCGA-BR-8363-01 12 126138173 126138173 C T TMEM132B Silent p.Y718Y 0.24 TCGA-BR-8363-01 12 12938628 12938635 GGTAAGTG - APOLD1 Intron 0.13 TCGA-BR-8363-01 12 130648605 130648605 G A FZD10 Missense_Mutation p.R373H 0.14 deleterious(0) probably_damaging(0.999) TCGA-BR-8363-01 12 130929742 130929742 G A RIMBP2 Silent p.Y201Y 0.23 TCGA-BR-8363-01 12 13214536 13214536 T C KIAA1467 Missense_Mutation p.V187A 0.18 tolerated(0.11) benign(0.005) TCGA-BR-8363-01 12 132402066 132402066 C - ULK1 Frame_Shift_Del p.Q767Rfs*57 0.13 TCGA-BR-8363-01 12 132475215 132475215 A - EP400 Frame_Shift_Del p.R864Gfs*5 0.18 TCGA-BR-8363-01 12 133435665 133435665 G A CHFR Silent p.H312H 0.30 TCGA-BR-8363-01 12 13715771 13715771 G A GRIN2B Silent p.G1467G 0.15 TCGA-BR-8363-01 12 14577701 14577701 C A ATF7IP Silent p.T284T 0.10 TCGA-BR-8363-01 12 15669846 15669846 A G PTPRO Missense_Mutation p.T579A 0.06 deleterious(0.01) benign(0.437) TCGA-BR-8363-01 12 1702997 1702997 C T FBXL14 Missense_Mutation p.R79H 0.30 deleterious(0.01) possibly_damaging(0.891) TCGA-BR-8363-01 12 22354742 22354742 C T ST8SIA1 Missense_Mutation p.R272H 0.15 deleterious(0) probably_damaging(1) TCGA-BR-8363-01 12 24736364 24736364 C T LINC00477 RNA 0.20 TCGA-BR-8363-01 12 2706448 2706448 C T CACNA1C Missense_Mutation p.A949V 0.13 tolerated_low_confidence(0.59) benign(0) TCGA-BR-8363-01 12 2714915 2714915 A C CACNA1C Missense_Mutation p.Q1060P 0.18 deleterious(0) probably_damaging(0.959) TCGA-BR-8363-01 12 2907011 2907011 C - FKBP4 Frame_Shift_Del p.N125Mfs*18 0.13 TCGA-BR-8363-01 12 29604296 29604296 T G OVCH1 Missense_Mutation p.S913R 0.23 tolerated(0.55) benign(0.003) TCGA-BR-8363-01 12 30827606 30827606 G A IPO8 Missense_Mutation p.R271W 0.15 deleterious(0) probably_damaging(0.988) TCGA-BR-8363-01 12 39727030 39727030 C T KIF21A Missense_Mutation p.R824H 0.20 deleterious(0) probably_damaging(0.985) TCGA-BR-8363-01 12 42499815 42499816 - A GXYLT1 Frame_Shift_Ins p.L223Ffs*5 0.21 TCGA-BR-8363-01 12 443491 443491 G T KDM5A Missense_Mutation p.P469Q 0.09 deleterious(0) probably_damaging(0.999) TCGA-BR-8363-01 12 4919254 4919254 G A KCNA6 Missense_Mutation p.R16H 0.13 tolerated_low_confidence(0.12) benign(0.008) TCGA-BR-8363-01 12 49445500 49445500 G - KMT2D Frame_Shift_Del p.L656Cfs*274 0.27 TCGA-BR-8363-01 12 51584325 51584325 A G POU6F1 Missense_Mutation p.V204A 0.12 deleterious(0) possibly_damaging(0.845) TCGA-BR-8363-01 12 52284676 52284676 G A ANKRD33 Missense_Mutation p.A316T 0.15 tolerated(0.29) probably_damaging(0.969) TCGA-BR-8363-01 12 52681817 52681817 T C KRT81 Missense_Mutation p.D284G 0.12 deleterious(0.01) probably_damaging(0.933) TCGA-BR-8363-01 12 52881539 52881539 T A KRT6A Missense_Mutation p.T554S 0.28 tolerated(0.13) unknown(0) TCGA-BR-8363-01 12 52914162 52914162 C T KRT5 5'UTR 0.27 TCGA-BR-8363-01 12 53207679 53207679 A G KRT4 Missense_Mutation p.L55P 0.10 deleterious(0.05) possibly_damaging(0.902) TCGA-BR-8363-01 12 53470932 53470932 A C SPRYD3 Missense_Mutation p.F46C 0.25 tolerated(0.34) benign(0.001) TCGA-BR-8363-01 12 53874984 53874985 - G MAP3K12 Frame_Shift_Ins p.A888Sfs*15 0.20 TCGA-BR-8363-01 12 54903701 54903701 C T NCKAP1L Missense_Mutation p.R223C 0.13 deleterious(0) probably_damaging(1) TCGA-BR-8363-01 12 55759486 55759486 T - OR6C75 Frame_Shift_Del p.L200* 0.28 TCGA-BR-8363-01 12 56094815 56094815 C T ITGA7 Missense_Mutation p.E180K 0.13 tolerated(0.06) probably_damaging(0.984) TCGA-BR-8363-01 12 56221131 56221131 G C DNAJC14 Missense_Mutation p.P438A 0.25 deleterious(0) benign(0.234) TCGA-BR-8363-01 12 56495050 56495050 G A ERBB3 Missense_Mutation p.R1136H 0.28 deleterious(0) probably_damaging(0.999) TCGA-BR-8363-01 12 56566249 56566249 C T SMARCC2 Missense_Mutation p.R599H 0.07 deleterious(0) possibly_damaging(0.812) TCGA-BR-8363-01 12 56639297 56639297 C T ANKRD52 Silent p.T756T 0.28 TCGA-BR-8363-01 12 57008974 57008974 A - BAZ2A Frame_Shift_Del p.F187Sfs*23 0.13 TCGA-BR-8363-01 12 57432416 57432416 A G MYO1A Missense_Mutation p.Y514H 0.14 deleterious(0) probably_damaging(0.99) TCGA-BR-8363-01 12 57577934 57577934 G A LRP1 Missense_Mutation p.R1999H 0.26 probably_damaging(1) TCGA-BR-8363-01 12 57597035 57597035 G A LRP1 Missense_Mutation p.D3595N 0.11 probably_damaging(1) TCGA-BR-8363-01 12 58021483 58021483 G A B4GALNT1 Silent p.G434G 0.21 TCGA-BR-8363-01 12 64615892 64615892 C A C12orf66 Missense_Mutation p.E42D 0.30 tolerated(1) benign(0.012) TCGA-BR-8363-01 12 65634842 65634842 A G LEMD3 Missense_Mutation p.I760M 0.11 tolerated(0.33) benign(0.154) TCGA-BR-8363-01 12 65639551 65639551 T C LEMD3 Silent p.R830R 0.15 TCGA-BR-8363-01 12 68050891 68050891 C T DYRK2 Silent p.G68G 0.24 TCGA-BR-8363-01 12 69140182 69140182 C T SLC35E3 Missense_Mutation p.R9W 0.15 tolerated(0.22) benign(0.001) TCGA-BR-8363-01 12 6939061 6939063 CTT - GPR162 3'Flank 0.34 TCGA-BR-8363-01 12 70004012 70004012 G A LRRC10 Missense_Mutation p.R203C 0.13 tolerated(0.21) benign(0.003) TCGA-BR-8363-01 12 7046302 7046302 G A ATN1 Silent p.S624S 0.32 TCGA-BR-8363-01 12 7177639 7177639 C T C1S Missense_Mutation p.A584V 0.12 tolerated(0.48) benign(0.329) TCGA-BR-8363-01 12 72070679 72070679 C T THAP2 Missense_Mutation p.R160C 0.12 deleterious(0) benign(0.005) TCGA-BR-8363-01 12 72355427 72355427 G A TPH2 Intron 0.15 TCGA-BR-8363-01 12 7249434 7249434 G A C1RL Silent p.D339D 0.25 TCGA-BR-8363-01 12 7527479 7527479 T C CD163L1 Silent p.V1014V 0.21 TCGA-BR-8363-01 12 80722859 80722859 A G OTOGL Silent p.T1427T 0.18 TCGA-BR-8363-01 12 81532965 81532965 A G ACSS3 Missense_Mutation p.Y234C 0.06 deleterious(0) probably_damaging(1) TCGA-BR-8363-01 12 83444732 83444732 A - TMTC2 Frame_Shift_Del p.A737Qfs*4 0.21 TCGA-BR-8363-01 12 8387020 8387020 G A RP11-266K4.9 5'Flank 0.22 TCGA-BR-8363-01 12 85260861 85260861 A G SLC6A15 Missense_Mutation p.V536A 0.10 deleterious(0) possibly_damaging(0.454) TCGA-BR-8363-01 12 86373639 86373639 A G MGAT4C Silent p.L289L 0.31 TCGA-BR-8363-01 12 93172940 93172940 T - EEA1 Frame_Shift_Del p.K1202Rfs*6 0.12 TCGA-BR-8363-01 12 95387988 95387988 T - NDUFA12 Frame_Shift_Del p.N72Tfs*22 0.27 TCGA-BR-8363-01 12 96371742 96371742 A G HAL Missense_Mutation p.V545A 0.19 deleterious(0) probably_damaging(1) TCGA-BR-8363-01 12 9907713 9907713 T C CD69 Missense_Mutation p.N111S 0.14 tolerated(0.93) benign(0) TCGA-BR-8363-01 13 103703715 103703715 C A SLC10A2 Missense_Mutation p.S218I 0.11 deleterious(0) benign(0.063) TCGA-BR-8363-01 13 107220225 107220225 T C ARGLU1 Missense_Mutation p.T15A 0.19 tolerated(0.64) unknown(0) TCGA-BR-8363-01 13 109793685 109793685 C T MYO16 Missense_Mutation p.R1687W 0.18 deleterious_low_confidence(0) probably_damaging(1) TCGA-BR-8363-01 13 110829295 110829295 C A COL4A1 Missense_Mutation p.G936C 0.17 probably_damaging(1) TCGA-BR-8363-01 13 113748925 113748925 C T MCF2L Silent p.D1017D 0.13 TCGA-BR-8363-01 13 113826335 113826335 G A PROZ Silent p.S395S 0.21 TCGA-BR-8363-01 13 21562745 21562745 C T LATS2 Missense_Mutation p.A392T 0.29 tolerated_low_confidence(0.37) benign(0.024) TCGA-BR-8363-01 13 24892987 24892987 G T C1QTNF9 Missense_Mutation p.K66N 0.07 tolerated(0.22) benign(0.038) TCGA-BR-8363-01 13 25848300 25848300 C T MTMR6 Missense_Mutation p.R17Q 0.11 deleterious(0.04) probably_damaging(0.971) TCGA-BR-8363-01 13 28197194 28197194 A G POLR1D Missense_Mutation p.Y70C 0.15 deleterious(0) probably_damaging(1) TCGA-BR-8363-01 13 31711655 31711655 T C HSPH1 Missense_Mutation p.N793D 0.12 tolerated(1) benign(0.001) TCGA-BR-8363-01 13 32841309 32841309 T C FRY Missense_Mutation p.F2650S 0.14 tolerated_low_confidence(0.47) benign(0) TCGA-BR-8363-01 13 33686968 33686968 G A STARD13 Silent p.N794N 0.14 TCGA-BR-8363-01 13 34409330 34409330 T C RFC3 Silent p.C285C 0.15 TCGA-BR-8363-01 13 39586878 39586878 G A PROSER1 Silent p.F837F 0.14 TCGA-BR-8363-01 13 45602033 45602033 T C GPALPP1 Silent p.D306D 0.16 TCGA-BR-8363-01 13 48955538 48955538 C T RB1 Nonsense_Mutation p.R552* 0.14 TCGA-BR-8363-01 13 52603836 52603836 A - UTP14C Frame_Shift_Del p.N300Tfs*33 0.16 TCGA-BR-8363-01 13 52604660 52604660 G A UTP14C Missense_Mutation p.A574T 0.13 tolerated(0.16) benign(0.128) TCGA-BR-8363-01 13 52952340 52952340 A T THSD1 Missense_Mutation p.S589T 0.18 tolerated(0.09) possibly_damaging(0.488) TCGA-BR-8363-01 13 58208417 58208417 C T PCDH17 Silent p.N579N 0.09 TCGA-BR-8363-01 13 58299089 58299089 C T PCDH17 Silent p.C1047C 0.12 TCGA-BR-8363-01 13 77641917 77641917 G - MYCBP2 Frame_Shift_Del p.P4047Qfs*26 0.15 TCGA-BR-8363-01 13 77900636 77900636 C - MYCBP2 Frame_Shift_Del p.G54Afs*15 0.12 TCGA-BR-8363-01 13 84453562 84453562 A T SLITRK1 Missense_Mutation p.L694H 0.25 deleterious(0) possibly_damaging(0.712) TCGA-BR-8363-01 13 95279495 95279495 T - GPR180 3'UTR 0.27 TCGA-BR-8363-01 13 96513045 96513045 A - UGGT2 Frame_Shift_Del p.L1246* 0.20 TCGA-BR-8363-01 14 104624235 104624235 G - KIF26A Frame_Shift_Del p.G295Afs*13 0.09 TCGA-BR-8363-01 14 105207519 105207519 C T ADSSL1 Silent p.H287H 0.19 TCGA-BR-8363-01 14 105834470 105834470 G A PACS2 Missense_Mutation p.A216T 0.27 tolerated(0.11) probably_damaging(0.993) TCGA-BR-8363-01 14 106209359 106209359 C G IGHG1 Missense_Mutation p.S17T 0.21 tolerated(0.75) benign(0) TCGA-BR-8363-01 14 20846923 20846923 C A TEP1 Missense_Mutation p.G1781V 0.13 tolerated(0.29) probably_damaging(0.969) TCGA-BR-8363-01 14 20978775 20978775 T G RNASE10 Missense_Mutation p.S49A 0.16 tolerated(0.06) benign(0.045) TCGA-BR-8363-01 14 21794313 21794313 A - RPGRIP1 Frame_Shift_Del p.N899Mfs*38 0.21 TCGA-BR-8363-01 14 21861975 21861975 A C CHD8 Silent p.T1993T 0.13 TCGA-BR-8363-01 14 21944703 21944703 G A RAB2B Silent p.V34V 0.15 TCGA-BR-8363-01 14 22090048 22090048 C A TRAV1-1 5'UTR 0.16 TCGA-BR-8363-01 14 22789011 22789011 A C TRAV41 Missense_Mutation p.K75T 0.26 tolerated(1) benign(0.005) TCGA-BR-8363-01 14 24610160 24610160 T G EMC9 Silent p.G71G 0.10 TCGA-BR-8363-01 14 24839415 24839415 T C NFATC4 Missense_Mutation p.Y334H 0.17 tolerated(0.65) benign(0.204) TCGA-BR-8363-01 14 31177207 31177207 G A SCFD1 Missense_Mutation p.R522Q 0.10 deleterious(0.03) benign(0.388) TCGA-BR-8363-01 14 36003563 36003563 G A INSM2 Silent p.P35P 0.12 TCGA-BR-8363-01 14 37135670 37135670 G A PAX9 Missense_Mutation p.S212N 0.17 tolerated(0.12) benign(0) TCGA-BR-8363-01 14 38679010 38679010 T G SSTR1 Missense_Mutation p.V139G 0.18 deleterious(0) benign(0.291) TCGA-BR-8363-01 14 39716566 39716566 A G MIA2 Missense_Mutation p.D263G 0.15 deleterious(0.01) possibly_damaging(0.888) TCGA-BR-8363-01 14 45414260 45414260 T C KLHL28 Missense_Mutation p.K291R 0.13 tolerated(0.8) benign(0.334) TCGA-BR-8363-01 14 53177863 53177863 T C PSMC6 Silent p.D115D 0.23 TCGA-BR-8363-01 14 59819321 59819321 G T DAAM1 Missense_Mutation p.K756N 0.11 deleterious(0) possibly_damaging(0.898) TCGA-BR-8363-01 14 62016563 62016564 GA - PRKCH 3'UTR 0.15 TCGA-BR-8363-01 14 65009256 65009256 C T HSPA2 Silent p.G563G 0.17 TCGA-BR-8363-01 14 65055877 65055877 A G PPP1R36 Missense_Mutation p.I364V 0.08 deleterious(0.01) possibly_damaging(0.799) TCGA-BR-8363-01 14 65507524 65507524 G T FNTB Missense_Mutation p.G237C 0.16 deleterious(0) probably_damaging(1) TCGA-BR-8363-01 14 74551092 74551092 C T ALDH6A1 Silent p.A2A 0.14 TCGA-BR-8363-01 14 74968213 74968213 C T LTBP2 Missense_Mutation p.V1751M 0.19 deleterious(0) probably_damaging(1) TCGA-BR-8363-01 14 76156621 76156621 T C TTLL5 Missense_Mutation p.L153P 0.15 deleterious(0) probably_damaging(0.974) TCGA-BR-8363-01 14 77239634 77239634 G T VASH1 Intron 0.16 TCGA-BR-8363-01 14 80669474 80669474 T G DIO2 Missense_Mutation p.N163T 0.10 deleterious(0) probably_damaging(0.999) TCGA-BR-8363-01 14 80963868 80963868 A G CEP128 Missense_Mutation p.M1080T 0.20 tolerated(0.27) benign(0.003) TCGA-BR-8363-01 14 81952771 81952771 G A SEL1L Missense_Mutation p.R554C 0.14 deleterious(0.01) probably_damaging(0.977) TCGA-BR-8363-01 14 95108124 95108124 A - SERPINA13P RNA 0.16 TCGA-BR-8363-01 15 25425489 25425489 C T SNORD115-6 5'Flank 0.47 TCGA-BR-8363-01 15 25961952 25961952 G A ATP10A Silent p.D567D 0.12 TCGA-BR-8363-01 15 28413654 28413654 C T HERC2 Missense_Mutation p.D3438N 0.14 benign(0.003) TCGA-BR-8363-01 15 31217442 31217442 T C FAN1 Missense_Mutation p.F762S 0.15 deleterious(0.01) benign(0.094) TCGA-BR-8363-01 15 34130198 34130198 C A RYR3 Missense_Mutation p.P4006Q 0.17 probably_damaging(1) TCGA-BR-8363-01 15 34150100 34150100 C T RYR3 Silent p.C4709C 0.11 TCGA-BR-8363-01 15 35045250 35045251 CC A GJD2 Frame_Shift_Del p.G132Lfs*19 0.12 TCGA-BR-8363-01 15 39910003 39910003 A G FSIP1 Silent p.G544G 0.11 TCGA-BR-8363-01 15 40544718 40544718 C A C15orf56 Missense_Mutation p.R85L 0.14 deleterious_low_confidence(0.02) benign(0.433) TCGA-BR-8363-01 15 40659529 40659529 A G DISP2 Missense_Mutation p.S406G 0.19 tolerated(0.06) benign(0.281) TCGA-BR-8363-01 15 40659761 40659761 A G DISP2 Missense_Mutation p.H483R 0.04 deleterious(0.02) possibly_damaging(0.791) TCGA-BR-8363-01 15 40756744 40756744 G A BAHD1 Missense_Mutation p.E684K 0.22 tolerated(0.1) benign(0.169) TCGA-BR-8363-01 15 41812706 41812706 G T RPAP1 Missense_Mutation p.H1226Q 0.14 tolerated(0.39) possibly_damaging(0.548) TCGA-BR-8363-01 15 42148637 42148637 G A SPTBN5 Missense_Mutation p.R2990W 0.15 benign(0.014) TCGA-BR-8363-01 15 42377308 42377310 TGG - PLA2G4D In_Frame_Del p.T152del 0.12 TCGA-BR-8363-01 15 42439390 42439390 G A PLA2G4F Missense_Mutation p.R451C 0.18 tolerated(0.09) benign(0.005) TCGA-BR-8363-01 15 45392018 45392018 G A DUOX2 Missense_Mutation p.T1086M 0.17 deleterious(0) probably_damaging(0.99) TCGA-BR-8363-01 15 48812973 48812973 G A FBN1 Missense_Mutation p.R344C 0.20 probably_damaging(0.95) TCGA-BR-8363-01 15 51837811 51837811 C T DMXL2 Missense_Mutation p.R300K 0.19 tolerated(0.73) benign(0) TCGA-BR-8363-01 15 52620058 52620058 T - MYO5A Frame_Shift_Del p.V1543Yfs*2 0.16 TCGA-BR-8363-01 15 54025236 54025236 T G WDR72 Missense_Mutation p.Q37H 0.12 tolerated(0.65) possibly_damaging(0.695) TCGA-BR-8363-01 15 54306737 54306737 T G UNC13C Missense_Mutation p.L546R 0.13 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BR-8363-01 15 65454965 65454965 C T CLPX Missense_Mutation p.R231Q 0.15 tolerated(0.36) benign(0.02) TCGA-BR-8363-01 15 78390803 78390803 C A SH2D7 Silent p.A170A 0.16 TCGA-BR-8363-01 15 79178522 79178522 C T MORF4L1 Silent p.Y104Y 0.20 TCGA-BR-8363-01 15 79750312 79750312 G A KIAA1024 Missense_Mutation p.R608Q 0.12 deleterious(0.01) benign(0.055) TCGA-BR-8363-01 15 81575034 81575034 T C IL16 Missense_Mutation p.I379T 0.17 deleterious(0.01) possibly_damaging(0.662) TCGA-BR-8363-01 15 87531239 87531239 G T AGBL1 Silent p.L1035L 0.14 TCGA-BR-8363-01 15 90171558 90171558 G A KIF7 3'UTR 0.19 TCGA-BR-8363-01 15 90213365 90213365 G A PLIN1 Silent p.A148A 0.18 TCGA-BR-8363-01 15 91292793 91292794 AC - BLM Frame_Shift_Del p.Q100Efs*42 0.21 TCGA-BR-8363-01 15 99434645 99434645 C T IGF1R Silent p.N244N 0.17 TCGA-BR-8363-01 15 99670901 99670901 G A SYNM Missense_Mutation p.G778D 0.16 tolerated(0.12) benign(0.273) TCGA-BR-8363-01 16 1391358 1391358 G A BAIAP3 Missense_Mutation p.R235H 0.14 tolerated(0.11) possibly_damaging(0.532) TCGA-BR-8363-01 16 15711343 15711343 C T KIAA0430 Missense_Mutation p.V924I 0.20 tolerated(0.23) benign(0.015) TCGA-BR-8363-01 16 18853743 18853743 G A SMG1 Missense_Mutation p.R2085C 0.19 deleterious(0) probably_damaging(0.983) TCGA-BR-8363-01 16 1989086 1989086 C T MSRB1 3'UTR 0.21 TCGA-BR-8363-01 16 20838394 20838394 C T AC004381.6 Missense_Mutation p.T279M 0.15 deleterious(0) probably_damaging(1) TCGA-BR-8363-01 16 20981161 20981161 A T DNAH3 Missense_Mutation p.I2804N 0.17 deleterious(0) possibly_damaging(0.856) TCGA-BR-8363-01 16 21008636 21008636 C G DNAH3 Silent p.G2190G 0.12 TCGA-BR-8363-01 16 21221008 21221008 G T ZP2 Missense_Mutation p.L92M 0.14 tolerated(0.09) possibly_damaging(0.872) TCGA-BR-8363-01 16 2256519 2256519 A G MLST8 Missense_Mutation p.Y68C 0.20 deleterious(0) probably_damaging(1) TCGA-BR-8363-01 16 2334407 2334407 C A ABCA3 Silent p.L1245L 0.10 TCGA-BR-8363-01 16 23847653 23847653 T G PRKCB Missense_Mutation p.C53G 0.13 deleterious(0) probably_damaging(0.976) TCGA-BR-8363-01 16 25255311 25255311 G - ZKSCAN2 Frame_Shift_Del p.S593Afs*37 0.11 TCGA-BR-8363-01 16 27549671 27549671 C - GTF3C1 Frame_Shift_Del p.K147Rfs*3 0.12 TCGA-BR-8363-01 16 30410067 30410067 G A ZNF48 Missense_Mutation p.R499H 0.15 deleterious(0) possibly_damaging(0.86) TCGA-BR-8363-01 16 30795220 30795220 C T ZNF629 Silent p.P143P 0.19 TCGA-BR-8363-01 16 31088406 31088406 T G ZNF646 Missense_Mutation p.L254R 0.14 deleterious(0) probably_damaging(1) TCGA-BR-8363-01 16 31427908 31427908 A G ITGAD Missense_Mutation p.T814A 0.11 tolerated(0.09) possibly_damaging(0.774) TCGA-BR-8363-01 16 3724368 3724368 A T TRAP1 Missense_Mutation p.I339N 0.11 deleterious(0) probably_damaging(0.995) TCGA-BR-8363-01 16 3781324 3781326 AGG - CREBBP In_Frame_Del p.S1680del 0.27 TCGA-BR-8363-01 16 3789647 3789647 G A CREBBP Silent p.G1404G 0.25 TCGA-BR-8363-01 16 4408008 4408008 G A CORO7 Missense_Mutation p.P852S 0.15 tolerated(0.2) probably_damaging(0.943) TCGA-BR-8363-01 16 461435 461435 G A DECR2 Missense_Mutation p.A246T 0.19 deleterious(0) probably_damaging(0.998) TCGA-BR-8363-01 16 4935287 4935287 G A PPL Silent p.D1123D 0.15 TCGA-BR-8363-01 16 53404767 53404767 C A RP11-44F14.1 RNA 0.13 TCGA-BR-8363-01 16 54966770 54966770 C T IRX5 Missense_Mutation p.P204S 0.15 tolerated(0.11) probably_damaging(0.968) TCGA-BR-8363-01 16 56362621 56362621 A G GNAO1 Missense_Mutation p.M128V 0.18 tolerated(0.11) benign(0.006) TCGA-BR-8363-01 16 57060196 57060196 C - NLRC5 Frame_Shift_Del p.P449Lfs*17 0.16 TCGA-BR-8363-01 16 57953025 57953025 G A CNGB1 Silent p.P645P 0.11 TCGA-BR-8363-01 16 58071453 58071453 C A MMP15 Silent p.A80A 0.16 TCGA-BR-8363-01 16 66547656 66547656 A - TK2 Frame_Shift_Del p.F226Sfs*9 0.22 TCGA-BR-8363-01 16 66612849 66612849 C T CMTM1 Missense_Mutation p.P269L 0.11 tolerated(0.31) benign(0.004) TCGA-BR-8363-01 16 67199724 67199724 A G HSF4 Missense_Mutation p.Q112R 0.14 tolerated(0.08) probably_damaging(0.941) TCGA-BR-8363-01 16 67210807 67210807 C T KIAA0895L Missense_Mutation p.M441I 0.13 deleterious(0) possibly_damaging(0.823) TCGA-BR-8363-01 16 67404993 67404993 C T LRRC36 Missense_Mutation p.R448W 0.21 deleterious_low_confidence(0) possibly_damaging(0.814) TCGA-BR-8363-01 16 67575786 67575788 AGG - FAM65A In_Frame_Del p.E388del 0.16 TCGA-BR-8363-01 16 67645339 67645339 A - CTCF Frame_Shift_Del p.T204Qfs*18 0.20 TCGA-BR-8363-01 16 67861894 67861894 T C TSNAXIP1 Nonstop_Mutation p.*659Qext*17 0.16 TCGA-BR-8363-01 16 68248233 68248233 C G NFATC3 Intron 0.10 TCGA-BR-8363-01 16 68248270 68248270 T A NFATC3 Intron 0.20 TCGA-BR-8363-01 16 68264442 68264442 G - ESRP2 Frame_Shift_Del p.T639Pfs*39 0.14 TCGA-BR-8363-01 16 68335178 68335178 T C SLC7A6OS Nonstop_Mutation p.*310Wext*33 0.08 TCGA-BR-8363-01 16 68893886 68893886 C A TANGO6 Missense_Mutation p.P65H 0.13 deleterious(0.01) possibly_damaging(0.711) TCGA-BR-8363-01 16 69148719 69148719 C T HAS3 Silent p.G404G 0.20 TCGA-BR-8363-01 16 69352755 69352755 C T VPS4A Missense_Mutation p.R125W 0.04 deleterious(0) possibly_damaging(0.462) TCGA-BR-8363-01 16 70972629 70972630 - TG HYDIN Frame_Shift_Ins p.E2295Qfs*17 0.09 TCGA-BR-8363-01 16 77323191 77323191 T C ADAMTS18 Missense_Mutation p.T1174A 0.11 deleterious(0) possibly_damaging(0.883) TCGA-BR-8363-01 16 77353803 77353803 G T ADAMTS18 Missense_Mutation p.F825L 0.19 tolerated(0.08) benign(0.007) TCGA-BR-8363-01 16 80577247 80577247 A C DYNLRB2 Missense_Mutation p.E26D 0.19 tolerated(0.31) benign(0.096) TCGA-BR-8363-01 16 839642 839642 T C CHTF18 Missense_Mutation p.V178A 0.17 deleterious(0) benign(0.329) TCGA-BR-8363-01 16 84209824 84209824 C - DNAAF1 Frame_Shift_Del p.T664Pfs*71 0.10 TCGA-BR-8363-01 16 84690644 84690644 C T KLHL36 Silent p.I77I 0.16 TCGA-BR-8363-01 16 86601350 86601350 G A FOXC2 Missense_Mutation p.D137N 0.17 deleterious(0) probably_damaging(0.997) TCGA-BR-8363-01 16 86601500 86601500 C - FOXC2 Frame_Shift_Del p.P188Rfs*13 0.13 TCGA-BR-8363-01 16 87369022 87369022 C T FBXO31 Missense_Mutation p.R295H 0.21 tolerated(1) benign(0.001) TCGA-BR-8363-01 16 88695188 88695188 A G ZC3H18 Missense_Mutation p.K831R 0.11 deleterious_low_confidence(0) probably_damaging(0.948) TCGA-BR-8363-01 16 88958316 88958316 G A CBFA2T3 Missense_Mutation p.R229W 0.06 deleterious(0.04) possibly_damaging(0.849) TCGA-BR-8363-01 16 89245905 89245905 C T CDH15 Missense_Mutation p.R42C 0.14 deleterious(0) probably_damaging(1) TCGA-BR-8363-01 16 90030654 90030654 G A DEF8 Missense_Mutation p.R421H 0.20 tolerated(0.15) benign(0.056) TCGA-BR-8363-01 16 90124855 90124855 T C PRDM7 Missense_Mutation p.T441A 0.16 tolerated_low_confidence(0.07) benign(0.007) TCGA-BR-8363-01 16 90162498 90162498 C T TUBB8P7 RNA 0.24 TCGA-BR-8363-01 17 10428240 10428240 G A MYH2 Missense_Mutation p.S1602F 0.20 deleterious(0) benign(0.441) TCGA-BR-8363-01 17 10446227 10446228 - A MYH2 Frame_Shift_Ins p.Y290Lfs*7 0.12 TCGA-BR-8363-01 17 11648217 11648217 G A DNAH9 Missense_Mutation p.R2072H 0.16 probably_damaging(0.998) TCGA-BR-8363-01 17 11833202 11833202 A C DNAH9 Missense_Mutation p.K3966T 0.11 possibly_damaging(0.507) TCGA-BR-8363-01 17 12887995 12887995 A G ARHGAP44 Missense_Mutation p.Q696R 0.09 tolerated_low_confidence(0.25) benign(0.015) TCGA-BR-8363-01 17 16612530 16612530 G C CCDC144A Missense_Mutation p.V387L 0.16 tolerated(0.28) benign(0.002) TCGA-BR-8363-01 17 17722984 17722984 C T SREBF1 Silent p.P223P 0.22 TCGA-BR-8363-01 17 17957481 17957481 T A GID4 Missense_Mutation p.I180N 0.11 deleterious(0) probably_damaging(0.997) TCGA-BR-8363-01 17 18088243 18088243 G A ALKBH5 Missense_Mutation p.G229D 0.27 deleterious(0) probably_damaging(1) TCGA-BR-8363-01 17 2228714 2228714 G A TSR1 Missense_Mutation p.A635V 0.16 deleterious(0.01) possibly_damaging(0.906) TCGA-BR-8363-01 17 2601706 2601706 G A CLUH Missense_Mutation p.A444V 0.08 deleterious(0) probably_damaging(1) TCGA-BR-8363-01 17 26449740 26449740 T - NLK Frame_Shift_Del p.F192Lfs*30 0.17 TCGA-BR-8363-01 17 26554430 26554430 C T PYY2 RNA 0.33 TCGA-BR-8363-01 17 26691899 26691899 G T VTN 3'Flank 0.20 TCGA-BR-8363-01 17 26901545 26901545 G A ALDOC Silent p.H197H 0.15 TCGA-BR-8363-01 17 26901984 26901984 T C ALDOC Missense_Mutation p.E122G 0.14 deleterious(0) probably_damaging(0.997) TCGA-BR-8363-01 17 27031862 27031862 C A PROCA1 Splice_Site p.X31_splice 0.15 TCGA-BR-8363-01 17 27448161 27448161 G A MYO18A Silent p.T480T 0.19 TCGA-BR-8363-01 17 28296061 28296061 A - EFCAB5 Frame_Shift_Del p.K150Nfs*17 0.19 TCGA-BR-8363-01 17 29556373 29556373 C T NF1 Missense_Mutation p.R914W 0.16 deleterious(0) probably_damaging(0.988) TCGA-BR-8363-01 17 30814868 30814868 A G CDK5R1 Missense_Mutation p.N77S 0.13 tolerated(0.8) benign(0.039) TCGA-BR-8363-01 17 31322545 31322545 C T SPACA3 Silent p.A51A 0.20 TCGA-BR-8363-01 17 33445634 33445645 AGGGCCTGCCAA - RAD51D Intron 0.21 TCGA-BR-8363-01 17 33504125 33504125 G A UNC45B Silent p.P707P 0.15 TCGA-BR-8363-01 17 35900495 35900495 G A SYNRG Missense_Mutation p.T1118M 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-BR-8363-01 17 3646898 3646900 TCC - ITGAE In_Frame_Del p.E777del 0.22 TCGA-BR-8363-01 17 36708254 36708254 G - SRCIN1 Frame_Shift_Del p.S866Afs*4 0.16 TCGA-BR-8363-01 17 37564730 37564730 C T MED1 Silent p.G1248G 0.15 TCGA-BR-8363-01 17 38153770 38153770 G A PSMD3 Missense_Mutation p.R514Q 0.19 deleterious(0) probably_damaging(0.999) TCGA-BR-8363-01 17 38643661 38643661 T G TNS4 Missense_Mutation p.R305S 0.13 tolerated(0.15) benign(0.33) TCGA-BR-8363-01 17 3919623 3919625 GTT - ZZEF1 In_Frame_Del p.N2713del 0.09 TCGA-BR-8363-01 17 3919631 3919631 T G ZZEF1 Missense_Mutation p.N2711H 0.11 deleterious(0.04) probably_damaging(0.999) TCGA-BR-8363-01 17 40120342 40120342 A G CNP Missense_Mutation p.K87R 0.20 tolerated(0.42) benign(0.003) TCGA-BR-8363-01 17 40575027 40575027 T C PTRF Missense_Mutation p.Q30R 0.18 tolerated(0.51) benign(0.043) TCGA-BR-8363-01 17 40715058 40715058 T G COASY Missense_Mutation p.C169G 0.15 deleterious(0.05) possibly_damaging(0.67) TCGA-BR-8363-01 17 40762462 40812186 17:40762462-40812186 - TUBG1 large deletion 0.14 TCGA-BR-8363-01 17 40835908 40835908 T G CNTNAP1 Missense_Mutation p.L46R 0.14 tolerated(0.37) possibly_damaging(0.481) TCGA-BR-8363-01 17 40998188 40998188 G A AOC2 Silent p.V515V 0.14 TCGA-BR-8363-01 17 41002467 41002467 C - AOC2 3'UTR 0.22 TCGA-BR-8363-01 17 41151963 41151963 G A RPL27 Missense_Mutation p.G32D 0.15 deleterious(0.02) possibly_damaging(0.847) TCGA-BR-8363-01 17 41343441 41343441 C T NBR1 Nonsense_Mutation p.R306* 0.13 TCGA-BR-8363-01 17 42457460 42457460 C T ITGA2B Silent p.L554L 0.18 TCGA-BR-8363-01 17 42476786 42476786 G A GPATCH8 Missense_Mutation p.R887C 0.14 deleterious_low_confidence(0.03) unknown(0) TCGA-BR-8363-01 17 44109601 44109601 G - KANSL1 Frame_Shift_Del p.Q968Sfs*46 0.18 TCGA-BR-8363-01 17 45235659 45235659 G A CDC27 Missense_Mutation p.R130W 0.19 deleterious(0) probably_damaging(0.998) TCGA-BR-8363-01 17 46628219 46628219 C - HOXB3 Frame_Shift_Del p.G258Afs*19 0.16 TCGA-BR-8363-01 17 48157693 48157693 C T ITGA3 Missense_Mutation p.T925I 0.25 deleterious(0) possibly_damaging(0.848) TCGA-BR-8363-01 17 48431304 48431304 C - XYLT2 Frame_Shift_Del p.Q152Sfs*57 0.14 TCGA-BR-8363-01 17 5086549 5086549 G A ZNF594 Missense_Mutation p.R335C 0.18 tolerated(0.18) benign(0.002) TCGA-BR-8363-01 17 56389047 56389047 G A BZRAP1 Missense_Mutation p.P989L 0.12 tolerated(0.19) benign(0.009) TCGA-BR-8363-01 17 56620397 56620397 T C C17orf47 Missense_Mutation p.Y384C 0.12 tolerated(0.15) probably_damaging(0.966) TCGA-BR-8363-01 17 56833469 56833469 C T PPM1E Silent p.P37P 0.10 TCGA-BR-8363-01 17 57058285 57058285 C T PPM1E Missense_Mutation p.P721S 0.16 tolerated_low_confidence(0.11) benign(0.122) TCGA-BR-8363-01 17 57126658 57126658 G A TRIM37 Nonsense_Mutation p.R471* 0.14 TCGA-BR-8363-01 17 58525054 58525054 C T APPBP2 Missense_Mutation p.R549Q 0.18 tolerated(0.2) benign(0.208) TCGA-BR-8363-01 17 60042538 60042538 A G MED13 Missense_Mutation p.F1558S 0.14 tolerated(0.31) benign(0.133) TCGA-BR-8363-01 17 60766976 60766976 C T MRC2 Missense_Mutation p.P1143L 0.20 tolerated(0.12) probably_damaging(0.953) TCGA-BR-8363-01 17 62517549 62517549 A - CEP95 Frame_Shift_Del p.A209Pfs*2 0.17 TCGA-BR-8363-01 17 62582238 62582238 A G SMURF2 Missense_Mutation p.C151R 0.16 tolerated(0.1) benign(0.019) TCGA-BR-8363-01 17 64683239 64683239 A - PRKCA Frame_Shift_Del p.N182Ifs*2 0.12 TCGA-BR-8363-01 17 64873455 64873455 G A CACNG5 Missense_Mutation p.S2N 0.18 deleterious(0.03) benign(0.034) TCGA-BR-8363-01 17 65909216 65909216 A G BPTF Missense_Mutation p.E1739G 0.07 probably_damaging(0.999) TCGA-BR-8363-01 17 6943212 6943212 C A SLC16A13 Silent p.P404P 0.15 TCGA-BR-8363-01 17 70120419 70120419 G A SOX9 Missense_Mutation p.R474H 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-BR-8363-01 17 72947725 72947725 A G HID1 Silent p.N769N 0.19 TCGA-BR-8363-01 17 73164431 73164431 T C SUMO2 3'UTR 0.10 TCGA-BR-8363-01 17 73566223 73566223 C T LLGL2 Silent p.P587P 0.27 TCGA-BR-8363-01 17 73838636 73838637 - C UNC13D Frame_Shift_Ins p.S150Qfs*44 0.15 TCGA-BR-8363-01 17 74042211 74042211 G A SRP68 Nonsense_Mutation p.Q403* 0.16 TCGA-BR-8363-01 17 74078041 74078041 G A ZACN Missense_Mutation p.R320Q 0.14 tolerated(0.2) benign(0.163) TCGA-BR-8363-01 17 76486923 76486923 T C DNAH17 Missense_Mutation p.T2212A 0.25 probably_damaging(0.999) TCGA-BR-8363-01 17 7684072 7684072 G A DNAH2 Missense_Mutation p.R1992H 0.14 probably_damaging(1) TCGA-BR-8363-01 17 7748726 7748726 C T KDM6B 5'UTR 0.13 TCGA-BR-8363-01 17 78180824 78180824 T C CARD14 Missense_Mutation p.M916T 0.14 tolerated(0.36) benign(0.002) TCGA-BR-8363-01 17 78286811 78286811 G T RNF213 Splice_Site p.X886_splice 0.14 TCGA-BR-8363-01 17 78343450 78343450 C T RNF213 Missense_Mutation p.R4102C 0.17 benign(0.009) TCGA-BR-8363-01 17 78367414 78367414 C T RNF213 3'UTR 0.27 TCGA-BR-8363-01 17 79511073 79511073 G A C17orf70 Missense_Mutation p.A795V 0.24 deleterious(0.01) probably_damaging(0.928) TCGA-BR-8363-01 17 79517723 79517723 C T C17orf70 Missense_Mutation p.G266D 0.13 deleterious(0) probably_damaging(0.934) TCGA-BR-8363-01 17 79827069 79827069 G A ARHGDIA Missense_Mutation p.T132M 0.16 deleterious(0.04) possibly_damaging(0.694) TCGA-BR-8363-01 17 79982976 79982976 C T LRRC45 Missense_Mutation p.R152C 0.35 deleterious(0) probably_damaging(1) TCGA-BR-8363-01 17 80048926 80048926 G A FASN Silent p.R504R 0.28 TCGA-BR-8363-01 17 80858557 80858557 G A TBCD Silent p.T560T 0.12 TCGA-BR-8363-01 17 8219405 8219405 C T ARHGEF15 Missense_Mutation p.P548L 0.15 deleterious(0.02) probably_damaging(1) TCGA-BR-8363-01 18 10487675 10487675 C A APCDD1 Silent p.S395S 0.19 TCGA-BR-8363-01 18 12028895 12028895 C T IMPA2 Silent p.A218A 0.14 TCGA-BR-8363-01 18 12264361 12264361 A G CIDEA Missense_Mutation p.D80G 0.14 deleterious(0) probably_damaging(1) TCGA-BR-8363-01 18 21110257 21110257 T C C18orf8 Missense_Mutation p.L555P 0.17 deleterious(0) probably_damaging(0.998) TCGA-BR-8363-01 18 21111681 21111681 T - NPC1 3'UTR 0.12 TCGA-BR-8363-01 18 21736075 21736075 G A CABYR Intron 0.16 TCGA-BR-8363-01 18 2567059 2567059 C T METTL4 Missense_Mutation p.V53M 0.10 tolerated(0.19) benign(0.014) TCGA-BR-8363-01 18 30350355 30350355 G - KLHL14 Frame_Shift_Del p.P67Lfs*50 0.09 TCGA-BR-8363-01 18 32953924 32953924 C A ZNF396 Missense_Mutation p.W111C 0.20 tolerated(0.1) benign(0.079) TCGA-BR-8363-01 18 33289755 33289756 - A GALNT1 3'UTR 0.18 TCGA-BR-8363-01 18 34297930 34297930 G T FHOD3 Missense_Mutation p.G715V 0.20 tolerated(0.25) benign(0.334) TCGA-BR-8363-01 18 40857246 40857246 T - SYT4 Frame_Shift_Del p.M1? 0.13 TCGA-BR-8363-01 18 42531797 42531797 C A SETBP1 Missense_Mutation p.P831Q 0.08 deleterious(0) probably_damaging(0.999) TCGA-BR-8363-01 18 43217142 43217142 C T SLC14A2 Missense_Mutation p.P280S 0.15 tolerated(0.41) benign(0.009) TCGA-BR-8363-01 18 44444173 44444174 - A PIAS2 Frame_Shift_Ins p.I180Yfs*10 0.16 TCGA-BR-8363-01 18 47101749 47101749 T G LIPG Silent p.P194P 0.30 TCGA-BR-8363-01 18 51013277 51013277 C A DCC Missense_Mutation p.P1283T 0.13 deleterious(0.01) probably_damaging(0.978) TCGA-BR-8363-01 18 51729376 51729376 G - MBD2 Intron 0.09 TCGA-BR-8363-01 18 5394733 5394733 T A EPB41L3 Missense_Mutation p.K1071N 0.16 deleterious(0) probably_damaging(0.999) TCGA-BR-8363-01 18 56587380 56587380 T C ZNF532 Missense_Mutation p.C621R 0.24 deleterious(0) probably_damaging(0.999) TCGA-BR-8363-01 18 59166590 59166590 C T CDH20 Missense_Mutation p.R140W 0.12 tolerated(0.2) possibly_damaging(0.864) TCGA-BR-8363-01 18 6215765 6215765 G A L3MBTL4 Missense_Mutation p.A285V 0.07 deleterious(0.04) benign(0.019) TCGA-BR-8363-01 18 65178797 65178798 - A DSEL Frame_Shift_Ins p.Q1027Sfs*28 0.14 TCGA-BR-8363-01 18 7013871 7013871 G A LAMA1 Silent p.C1102C 0.12 TCGA-BR-8363-01 18 71796797 71796797 A G FBXO15 Missense_Mutation p.Y210H 0.14 tolerated(1) benign(0.008) TCGA-BR-8363-01 18 72234643 72234643 G A CNDP1 Missense_Mutation p.R244Q 0.11 deleterious(0.02) probably_damaging(0.997) TCGA-BR-8363-01 18 72775630 72775630 G A ZNF407 Missense_Mutation p.A1985T 0.21 tolerated(0.35) benign(0.007) TCGA-BR-8363-01 18 74729102 74729102 G T MBP Missense_Mutation p.R88S 0.18 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-BR-8363-01 18 74963088 74963088 G A GALR1 Missense_Mutation p.R195H 0.15 tolerated(0.16) benign(0.001) TCGA-BR-8363-01 18 77918110 77918110 G A PARD6G Silent p.A225A 0.14 TCGA-BR-8363-01 18 8635547 8635547 C T RAB12 Missense_Mutation p.A148V 0.10 tolerated(1) benign(0.142) TCGA-BR-8363-01 18 8784549 8784549 A G SOGA2 Missense_Mutation p.H480R 0.15 tolerated(0.35) benign(0.001) TCGA-BR-8363-01 19 1004918 1004918 G A GRIN3B Missense_Mutation p.R473H 0.18 deleterious(0.03) benign(0.022) TCGA-BR-8363-01 19 10444502 10444502 C - ICAM3 3'UTR 0.19 TCGA-BR-8363-01 19 10450340 10450340 A - ICAM3 5'UTR 0.26 TCGA-BR-8363-01 19 10664802 10664802 G T KRI1 Missense_Mutation p.P652H 0.15 tolerated(0.07) possibly_damaging(0.599) TCGA-BR-8363-01 19 10782043 10782043 G A ILF3 Silent p.K81K 0.13 TCGA-BR-8363-01 19 11121099 11121099 G T SMARCA4 Missense_Mutation p.Q722H 0.16 benign(0.006) TCGA-BR-8363-01 19 11123693 11123693 G T SMARCA4 Missense_Mutation p.M781I 0.11 probably_damaging(0.953) TCGA-BR-8363-01 19 1269881 1269881 T C CIRBP Intron 0.16 TCGA-BR-8363-01 19 12817467 12817467 G A TNPO2 Silent p.P471P 0.09 TCGA-BR-8363-01 19 12902925 12902925 G - JUNB Frame_Shift_Del p.G115Vfs*35 0.20 TCGA-BR-8363-01 19 13419248 13419248 C T CACNA1A Missense_Mutation p.R588H 0.15 probably_damaging(0.984) TCGA-BR-8363-01 19 14034594 14034594 G A CC2D1A Missense_Mutation p.R637H 0.11 tolerated(1) benign(0.008) TCGA-BR-8363-01 19 14046600 14046600 G A PODNL1 Missense_Mutation p.A150V 0.14 tolerated(0.5) benign(0.062) TCGA-BR-8363-01 19 14562741 14562741 C - PKN1 Frame_Shift_Del p.F366Sfs*2 0.20 TCGA-BR-8363-01 19 15760019 15760019 T C CYP4F3 Missense_Mutation p.F192S 0.07 deleterious(0.01) possibly_damaging(0.844) TCGA-BR-8363-01 19 16040318 16040318 G T CYP4F11 Missense_Mutation p.L98I 0.12 tolerated(1) benign(0.002) TCGA-BR-8363-01 19 16791226 16791226 C - TMEM38A Frame_Shift_Del p.L102Wfs*13 0.16 TCGA-BR-8363-01 19 16986971 16986971 C T SIN3B Missense_Mutation p.R932C 0.10 deleterious(0) probably_damaging(0.953) TCGA-BR-8363-01 19 17322706 17322706 C - MYO9B Intron 0.22 TCGA-BR-8363-01 19 17394149 17394149 C A ANKLE1 Missense_Mutation p.S192R 0.18 tolerated(0.11) benign(0.006) TCGA-BR-8363-01 19 17403453 17403453 C - ABHD8 3'UTR 0.29 TCGA-BR-8363-01 19 17838610 17838610 C T MAP1S Missense_Mutation p.A806V 0.19 tolerated(0.31) benign(0.055) TCGA-BR-8363-01 19 1802642 1802642 T C ATP8B3 Missense_Mutation p.T303A 0.17 tolerated(0.23) benign(0.403) TCGA-BR-8363-01 19 18499232 18499232 A C GDF15 Silent p.T138T 0.07 TCGA-BR-8363-01 19 18779306 18779306 G - KLHL26 Frame_Shift_Del p.Q369Sfs*22 0.16 TCGA-BR-8363-01 19 18900795 18900795 C T COMP Missense_Mutation p.A116T 0.09 tolerated(0.53) benign(0.046) TCGA-BR-8363-01 19 19312451 19312451 A G RFXANK Intron 0.18 TCGA-BR-8363-01 19 19369444 19369444 C - HAPLN4 Frame_Shift_Del p.T236Pfs*43 0.17 TCGA-BR-8363-01 19 19638863 19638863 C T NDUFA13 Silent p.I121I 0.19 TCGA-BR-8363-01 19 1978697 1978697 T G CSNK1G2 Missense_Mutation p.L132R 0.11 deleterious(0.03) probably_damaging(0.983) TCGA-BR-8363-01 19 1990129 1990129 G A BTBD2 Missense_Mutation p.R288C 0.22 deleterious(0.02) probably_damaging(0.998) TCGA-BR-8363-01 19 20045515 20045515 A C ZNF93 Missense_Mutation p.K584T 0.20 deleterious(0.04) possibly_damaging(0.746) TCGA-BR-8363-01 19 21216290 21216290 T A ZNF430 Missense_Mutation p.I42K 0.13 deleterious(0) probably_damaging(0.997) TCGA-BR-8363-01 19 2191077 2191077 C A DOT1L Missense_Mutation p.L111M 0.10 deleterious(0.05) probably_damaging(0.995) TCGA-BR-8363-01 19 22362819 22362819 C T ZNF676 Missense_Mutation p.G567D 0.14 tolerated(0.12) probably_damaging(0.999) TCGA-BR-8363-01 19 22605092 22605092 G T ZNF98 5'UTR 0.10 TCGA-BR-8363-01 19 2433843 2433843 A G LMNB2 Missense_Mutation p.L488P 0.19 deleterious(0) probably_damaging(1) TCGA-BR-8363-01 19 2733111 2733111 C - SLC39A3 Frame_Shift_Del p.E195Rfs*4 0.19 TCGA-BR-8363-01 19 2807510 2807510 G A THOP1 Silent p.A319A 0.27 TCGA-BR-8363-01 19 30496293 30496293 A - URI1 Frame_Shift_Del p.V134* 0.11 TCGA-BR-8363-01 19 33370222 33370222 C T CEP89 Missense_Mutation p.R733Q 0.15 deleterious(0.02) probably_damaging(0.928) TCGA-BR-8363-01 19 34302406 34302406 G A KCTD15 Silent p.T214T 0.11 TCGA-BR-8363-01 19 35791193 35791193 G A MAG Missense_Mutation p.E286K 0.30 tolerated(0.9) benign(0.003) TCGA-BR-8363-01 19 36134636 36134636 C T ETV2 Silent p.C232C 0.11 TCGA-BR-8363-01 19 36224731 36224731 C - KMT2B Frame_Shift_Del p.P2374Qfs*65 0.11 TCGA-BR-8363-01 19 36233448 36233448 G A U2AF1L4 3'UTR 0.17 TCGA-BR-8363-01 19 37644345 37644345 A G ZNF585A Silent p.L97L 0.14 TCGA-BR-8363-01 19 39398282 39398282 G A NFKBIB Missense_Mutation p.D318N 0.17 deleterious(0.02) benign(0.007) TCGA-BR-8363-01 19 3977228 3977228 C T EEF2 Missense_Mutation p.V790I 0.16 deleterious(0.01) probably_damaging(0.997) TCGA-BR-8363-01 19 3978014 3978014 C T EEF2 Missense_Mutation p.A624T 0.23 tolerated(0.05) benign(0.118) TCGA-BR-8363-01 19 39860427 39860427 C T SAMD4B Missense_Mutation p.A110V 0.20 deleterious(0.04) benign(0.053) TCGA-BR-8363-01 19 39961097 39961097 C T SUPT5H Silent p.G537G 0.15 TCGA-BR-8363-01 19 40363285 40363285 C T FCGBP Missense_Mutation p.V4929M 0.10 probably_damaging(0.961) TCGA-BR-8363-01 19 40900062 40900062 G - PRX Frame_Shift_Del p.K1400Sfs*18 0.18 TCGA-BR-8363-01 19 40929414 40929414 C T SERTAD1 Missense_Mutation p.E14K 0.06 deleterious(0.02) benign(0.022) TCGA-BR-8363-01 19 41349733 41349733 G A CYP2A6 Nonsense_Mutation p.R485* 0.06 TCGA-BR-8363-01 19 41601903 41601903 G - CYP2A13 3'UTR 0.11 TCGA-BR-8363-01 19 42301697 42301697 G T CEACAM3 Nonsense_Mutation p.G81* 0.17 TCGA-BR-8363-01 19 4361523 4361523 C T SH3GL1 3'UTR 0.29 TCGA-BR-8363-01 19 44174241 44174241 A G PLAUR Missense_Mutation p.L11P 0.18 tolerated(0.05) probably_damaging(0.979) TCGA-BR-8363-01 19 44791754 44791754 A G ZNF235 Missense_Mutation p.S612P 0.15 deleterious(0) probably_damaging(0.959) TCGA-BR-8363-01 19 4537923 4537923 C - LRG1 3'UTR 0.10 TCGA-BR-8363-01 19 4552597 4552597 G - SEMA6B Frame_Shift_Del p.R276Afs*11 0.12 TCGA-BR-8363-01 19 45805809 45805809 C T MARK4 Silent p.H700H 0.16 TCGA-BR-8363-01 19 46832597 46832597 G A HIF3A Missense_Mutation p.R525Q 0.20 tolerated(0.19) benign(0.015) TCGA-BR-8363-01 19 46915732 46915732 G T CCDC8 Silent p.T112T 0.14 TCGA-BR-8363-01 19 47969003 47969003 A - SLC8A2 Frame_Shift_Del p.S220Pfs*12 0.10 TCGA-BR-8363-01 19 48733886 48733886 C G CARD8 Missense_Mutation p.A282P 0.21 deleterious(0.01) possibly_damaging(0.829) TCGA-BR-8363-01 19 48908191 48908191 G A GRIN2D Silent p.T222T 0.17 TCGA-BR-8363-01 19 49238628 49238628 C T RASIP1 Missense_Mutation p.R335Q 0.17 tolerated(0.06) benign(0.02) TCGA-BR-8363-01 19 49552133 49552133 G - CGB8 5'UTR 0.12 TCGA-BR-8363-01 19 49686068 49686069 - C TRPM4 Frame_Shift_Ins p.D502* 0.15 TCGA-BR-8363-01 19 49793594 49793594 A G SLC6A16 Missense_Mutation p.L666P 0.21 deleterious(0) probably_damaging(0.984) TCGA-BR-8363-01 19 49965948 49965948 G - ALDH16A1 Frame_Shift_Del p.A347Lfs*155 0.18 TCGA-BR-8363-01 19 50161575 50161575 C - SCAF1 Frame_Shift_Del p.P1288Qfs*57 0.15 TCGA-BR-8363-01 19 50166672 50166672 C T IRF3 Missense_Mutation p.G89R 0.16 tolerated(0.59) probably_damaging(0.94) TCGA-BR-8363-01 19 50195521 50195521 G A CPT1C Silent p.A4A 0.16 TCGA-BR-8363-01 19 50304646 50304647 - C AP2A1 Frame_Shift_Ins p.V521Sfs*53 0.16 TCGA-BR-8363-01 19 50549329 50549330 - T ZNF473 Frame_Shift_Ins p.V546Cfs*18 0.17 TCGA-BR-8363-01 19 50752310 50752310 C T MYH14 Missense_Mutation p.R466C 0.15 deleterious(0) probably_damaging(1) TCGA-BR-8363-01 19 50847954 50847954 T C NAPSB RNA 0.21 TCGA-BR-8363-01 19 50882014 50882014 G A NR1H2 Silent p.Q236Q 0.14 TCGA-BR-8363-01 19 50979543 50979543 G A FAM71E1 Missense_Mutation p.H35Y 0.19 tolerated_low_confidence(0.07) benign(0.021) TCGA-BR-8363-01 19 51021472 51021472 C T LRRC4B Missense_Mutation p.G500R 0.12 tolerated_low_confidence(0.28) possibly_damaging(0.489) TCGA-BR-8363-01 19 51527542 51527542 C A KLK11 Missense_Mutation p.Q106H 0.12 deleterious(0) benign(0.174) TCGA-BR-8363-01 19 5231528 5231528 C - PTPRS Frame_Shift_Del p.A650Pfs*22 0.20 TCGA-BR-8363-01 19 52819102 52819102 A G ZNF480 Missense_Mutation p.D72G 0.14 tolerated(0.05) benign(0.004) TCGA-BR-8363-01 19 53085749 53085749 C T ZNF701 Missense_Mutation p.S212L 0.16 tolerated(0.12) benign(0.024) TCGA-BR-8363-01 19 53453423 53453423 T - ZNF816 Frame_Shift_Del p.K535Nfs*159 0.10 TCGA-BR-8363-01 19 53643876 53643876 T - ZNF347 Frame_Shift_Del p.K736Nfs*71 0.16 TCGA-BR-8363-01 19 53912301 53912301 A G ZNF765 Missense_Mutation p.D498G 0.12 deleterious(0.02) benign(0.266) TCGA-BR-8363-01 19 54079990 54079990 A - ZNF331 Frame_Shift_Del p.N61Tfs*5 0.14 TCGA-BR-8363-01 19 55098813 55098813 A G LILRA2 Nonstop_Mutation p.*484Wext*29 0.18 TCGA-BR-8363-01 19 55687229 55687229 G C SYT5 Missense_Mutation p.L130V 0.19 tolerated(0.31) benign(0.023) TCGA-BR-8363-01 19 55790814 55790814 C T HSPBP1 Missense_Mutation p.A55T 0.13 tolerated(0.12) benign(0.429) TCGA-BR-8363-01 19 5587293 5587293 A G SAFB2 Silent p.P941P 0.13 TCGA-BR-8363-01 19 57175267 57175267 C T ZNF835 Missense_Mutation p.A434T 0.16 tolerated(0.85) benign(0) TCGA-BR-8363-01 19 57335816 57335816 G T PEG3 Missense_Mutation p.L70I 0.15 deleterious(0) possibly_damaging(0.545) TCGA-BR-8363-01 19 57765984 57765984 T C ZNF805 Silent p.T599T 0.13 TCGA-BR-8363-01 19 5778543 5778543 C T CATSPERD Silent p.R751R 0.24 TCGA-BR-8363-01 19 58153457 58153457 A G ZNF211 Missense_Mutation p.R600G 0.19 deleterious(0.04) benign(0.022) TCGA-BR-8363-01 19 58288015 58288015 C T ZNF586 Silent p.T47T 0.14 TCGA-BR-8363-01 19 58490178 58490178 A T ZNF606 Missense_Mutation p.Y624N 0.15 deleterious(0) probably_damaging(0.988) TCGA-BR-8363-01 19 58640644 58640644 C T ZNF329 Missense_Mutation p.S76N 0.12 tolerated(0.74) benign(0.001) TCGA-BR-8363-01 19 58904820 58904820 C T RPS5 Missense_Mutation p.A138V 0.12 deleterious(0) possibly_damaging(0.878) TCGA-BR-8363-01 19 6141552 6141552 G A ACSBG2 5'UTR 0.20 TCGA-BR-8363-01 19 6712378 6712378 C T C3 Missense_Mutation p.V387I 0.16 tolerated(0.63) benign(0.032) TCGA-BR-8363-01 19 6719344 6719344 C T C3 Missense_Mutation p.A49T 0.12 tolerated(0.39) benign(0.02) TCGA-BR-8363-01 19 7117116 7117116 C T INSR Missense_Mutation p.G1367D 0.15 deleterious(0) possibly_damaging(0.789) TCGA-BR-8363-01 19 7806631 7806631 A - CD209 3'UTR 0.23 TCGA-BR-8363-01 19 899642 899642 G A R3HDM4 Silent p.S202S 0.23 TCGA-BR-8363-01 19 920352 920352 C T KISS1R Silent p.A267A 0.29 TCGA-BR-8363-01 19 9489757 9489757 C A ZNF177 Silent p.A51A 0.20 TCGA-BR-8363-01 19 9529198 9529198 T G ZNF266 Missense_Mutation p.K6T 0.17 deleterious(0.01) benign(0.108) TCGA-BR-8363-01 19 991989 991989 C T WDR18 Silent p.P322P 0.22 TCGA-BR-8363-01 19 9958825 9958825 G T PIN1 Intron 0.28 TCGA-BR-8363-01 1 109795285 109795285 G A CELSR2 Missense_Mutation p.G862S 0.22 deleterious(0.02) probably_damaging(0.981) TCGA-BR-8363-01 1 110050335 110050335 G T AMIGO1 Nonsense_Mutation p.C400* 0.19 TCGA-BR-8363-01 1 11008529 11008529 T C C1orf127 Missense_Mutation p.K555E 0.19 deleterious(0.01) benign(0.036) TCGA-BR-8363-01 1 110754491 110754491 C T KCNC4 Missense_Mutation p.P124S 0.08 deleterious(0) probably_damaging(0.998) TCGA-BR-8363-01 1 111216088 111216088 G A KCNA3 Silent p.G448G 0.13 TCGA-BR-8363-01 1 111216663 111216663 G A KCNA3 Missense_Mutation p.P257S 0.20 deleterious(0) probably_damaging(0.999) TCGA-BR-8363-01 1 111217063 111217063 G A KCNA3 Silent p.C123C 0.15 TCGA-BR-8363-01 1 11137673 11137673 C T EXOSC10 Silent p.P595P 0.21 TCGA-BR-8363-01 1 11181356 11181356 T C MTOR Missense_Mutation p.T2294A 0.13 deleterious(0) probably_damaging(0.989) TCGA-BR-8363-01 1 113265709 113265709 C T FAM19A3 Missense_Mutation p.R63C 0.17 deleterious(0) probably_damaging(0.931) TCGA-BR-8363-01 1 114226109 114226109 A C MAGI3 Missense_Mutation p.K1307Q 0.22 tolerated_low_confidence(0.07) benign(0.016) TCGA-BR-8363-01 1 115430252 115430252 A - SYCP1 Frame_Shift_Del p.N401Mfs*5 0.21 TCGA-BR-8363-01 1 115488986 115488986 C T SYCP1 Missense_Mutation p.S744L 0.20 deleterious(0.05) benign(0.052) TCGA-BR-8363-01 1 11579431 11579431 C T PTCHD2 Missense_Mutation p.R637W 0.14 tolerated(0.08) possibly_damaging(0.713) TCGA-BR-8363-01 1 117087118 117087118 T - CD58 Frame_Shift_Del p.K60Rfs*24 0.11 TCGA-BR-8363-01 1 118035834 118035834 T A MAN1A2 Missense_Mutation p.S412T 0.18 tolerated(0.05) benign(0.038) TCGA-BR-8363-01 1 119619170 119619170 T C WARS2 Missense_Mutation p.N51D 0.15 deleterious(0) probably_damaging(1) TCGA-BR-8363-01 1 120263849 120263849 C T PHGDH Silent p.N65N 0.15 TCGA-BR-8363-01 1 1290109 1290109 C T MXRA8 Missense_Mutation p.R301Q 0.23 tolerated(0.25) benign(0.005) TCGA-BR-8363-01 1 145457969 145457969 T C POLR3GL Silent p.S97S 0.18 TCGA-BR-8363-01 1 145578385 145578385 C - PIAS3 Frame_Shift_Del p.P118Lfs*12 0.15 TCGA-BR-8363-01 1 145578465 145578465 G A PIAS3 Missense_Mutation p.R143Q 0.20 deleterious(0) possibly_damaging(0.523) TCGA-BR-8363-01 1 149760090 149760090 A G FCGR1A Missense_Mutation p.N159S 0.13 tolerated(0.14) benign(0.024) TCGA-BR-8363-01 1 150131249 150131249 C - PLEKHO1 Frame_Shift_Del p.Q256Rfs*6 0.21 TCGA-BR-8363-01 1 151260126 151260126 C T ZNF687 Silent p.D453D 0.18 TCGA-BR-8363-01 1 151503053 151503053 G A CGN Missense_Mutation p.R801H 0.25 tolerated(0.07) probably_damaging(0.928) TCGA-BR-8363-01 1 152083414 152083414 T C TCHH Missense_Mutation p.E760G 0.18 unknown(0) TCGA-BR-8363-01 1 152128528 152128528 T - RPTN Frame_Shift_Del p.G350Afs*141 0.21 TCGA-BR-8363-01 1 152276300 152276300 G A FLG Missense_Mutation p.H3688Y 0.16 unknown(0) TCGA-BR-8363-01 1 152325255 152325256 - TG FLG2 Frame_Shift_Ins p.T1670Ifs*19 0.13 TCGA-BR-8363-01 1 152760047 152760047 A G LCE1E Missense_Mutation p.Q91R 0.11 deleterious_low_confidence(0) unknown(0) TCGA-BR-8363-01 1 152770530 152770530 A G LCE1D Missense_Mutation p.Q87R 0.11 unknown(0) TCGA-BR-8363-01 1 153234308 153234308 G A LOR Missense_Mutation p.V295I 0.21 unknown(0) TCGA-BR-8363-01 1 153591342 153591342 C T S100A13 3'UTR 0.19 TCGA-BR-8363-01 1 153906294 153906294 C T DENND4B Missense_Mutation p.D999N 0.10 tolerated(0.15) probably_damaging(0.99) TCGA-BR-8363-01 1 155532146 155532146 G A ASH1L 5'UTR 0.15 TCGA-BR-8363-01 1 156046866 156046867 - G MEX3A Frame_Shift_Ins p.R355Tfs*4 0.20 TCGA-BR-8363-01 1 1562227 1562227 G A MIB2 Missense_Mutation p.R478H 0.15 tolerated(0.13) benign(0.006) TCGA-BR-8363-01 1 156228860 156228860 A G SMG5 Missense_Mutation p.F793S 0.19 deleterious(0) possibly_damaging(0.852) TCGA-BR-8363-01 1 156594421 156594421 C T HAPLN2 Silent p.N195N 0.18 TCGA-BR-8363-01 1 156595252 156595252 G A HAPLN2 3'UTR 0.38 TCGA-BR-8363-01 1 156641212 156641212 A G NES Missense_Mutation p.L923P 0.13 tolerated(0.26) benign(0.009) TCGA-BR-8363-01 1 156836706 156836706 C A NTRK1 Missense_Mutation p.L122I 0.10 deleterious(0.02) possibly_damaging(0.769) TCGA-BR-8363-01 1 156909362 156909362 T C ARHGEF11 Silent p.G1358G 0.18 TCGA-BR-8363-01 1 15808798 15808798 A G CELA2B Missense_Mutation p.N89S 0.16 tolerated(0.25) benign(0.005) TCGA-BR-8363-01 1 158225973 158225973 C T CD1A Nonsense_Mutation p.Q169* 0.13 TCGA-BR-8363-01 1 158609667 158609667 A G SPTA1 Missense_Mutation p.L1623P 0.16 deleterious(0) probably_damaging(1) TCGA-BR-8363-01 1 158641957 158641957 G A SPTA1 Silent p.A460A 0.12 TCGA-BR-8363-01 1 159019381 159019381 T G IFI16 Intron 0.13 TCGA-BR-8363-01 1 159505639 159505639 A G OR10J5 Silent p.H53H 0.17 TCGA-BR-8363-01 1 160312970 160312970 C A COPA 5'UTR 0.18 TCGA-BR-8363-01 1 160385899 160385899 G A VANGL2 Missense_Mutation p.G40E 0.14 tolerated(0.12) unknown(0) TCGA-BR-8363-01 1 160389203 160389203 G - VANGL2 Frame_Shift_Del p.V202Cfs*125 0.13 TCGA-BR-8363-01 1 161023062 161023062 C - ARHGAP30 Frame_Shift_Del p.G217Vfs*68 0.12 TCGA-BR-8363-01 1 16258881 16258881 G A SPEN Missense_Mutation p.G2049D 0.16 benign(0.075) TCGA-BR-8363-01 1 16261125 16261125 C T SPEN Missense_Mutation p.P2797L 0.11 possibly_damaging(0.626) TCGA-BR-8363-01 1 1635530 1635530 G - CDK11A Frame_Shift_Del p.P581Rfs*4 0.23 TCGA-BR-8363-01 1 166039513 166039513 G A FAM78B Missense_Mutation p.R251W 0.16 tolerated(0.07) probably_damaging(0.971) TCGA-BR-8363-01 1 169822809 169822809 A - C1orf112 3'UTR 0.14 TCGA-BR-8363-01 1 174652732 174652732 C T RABGAP1L Missense_Mutation p.H633Y 0.12 deleterious(0) probably_damaging(1) TCGA-BR-8363-01 1 1749278 1749279 GA - GNB1 Frame_Shift_Del p.Q32Dfs*46 0.13 TCGA-BR-8363-01 1 175306814 175306814 T C TNR Silent p.G1128G 0.20 TCGA-BR-8363-01 1 177245458 177245458 C T BRINP2 Silent p.S300S 0.18 TCGA-BR-8363-01 1 178854298 178854298 G A RALGPS2 Missense_Mutation p.R331Q 0.12 tolerated(0.21) benign(0.003) TCGA-BR-8363-01 1 179982981 179982981 G - CEP350 Splice_Site p.X466_splice 0.11 TCGA-BR-8363-01 1 180897619 180897619 C T KIAA1614 Missense_Mutation p.T372M 0.15 deleterious(0) benign(0.439) TCGA-BR-8363-01 1 182856513 182856514 - G DHX9 Frame_Shift_Ins p.A1255Gfs*27 0.16 TCGA-BR-8363-01 1 183086469 183086469 C T LAMC1 Missense_Mutation p.R527C 0.13 deleterious(0.01) benign(0.386) TCGA-BR-8363-01 1 186022123 186022123 T G HMCN1 Missense_Mutation p.L2206R 0.19 probably_damaging(0.999) TCGA-BR-8363-01 1 18809260 18809260 C T KLHDC7A Silent p.G595G 0.14 TCGA-BR-8363-01 1 190129952 190129952 A G BRINP3 Silent p.L344L 0.20 TCGA-BR-8363-01 1 19565789 19565789 A G EMC1 Missense_Mutation p.L321P 0.12 tolerated(0.06) probably_damaging(0.994) TCGA-BR-8363-01 1 196295987 196295987 T - KCNT2 Frame_Shift_Del p.A713Pfs*8 0.10 TCGA-BR-8363-01 1 197145703 197145703 T - ZBTB41 Frame_Shift_Del p.I624Yfs*88 0.18 TCGA-BR-8363-01 1 197168890 197168890 T - ZBTB41 Frame_Shift_Del p.K238Nfs*4 0.14 TCGA-BR-8363-01 1 197404311 197404312 TC - CRB1 Frame_Shift_Del p.S1108Lfs*3 0.13 TCGA-BR-8363-01 1 197890647 197890647 G A LHX9 Silent p.P197P 0.09 TCGA-BR-8363-01 1 201489303 201489303 G A RPS10P7 RNA 0.10 TCGA-BR-8363-01 1 202532034 202532034 A G PPP1R12B Missense_Mutation p.N879S 0.16 tolerated(1) benign(0) TCGA-BR-8363-01 1 202699003 202699003 G - KDM5B Frame_Shift_Del p.K1444Rfs*3 0.16 TCGA-BR-8363-01 1 203668687 203668687 T A ATP2B4 Nonsense_Mutation p.L164* 0.14 TCGA-BR-8363-01 1 2066734 2066734 G T PRKCZ Missense_Mutation p.R123M 0.07 deleterious(0) probably_damaging(0.973) TCGA-BR-8363-01 1 206858688 206858688 G C MAPKAPK2 Silent p.P38P 0.14 TCGA-BR-8363-01 1 207696973 207715544 1:207696973-207715544 - CR1 large deletion p.X170_splice 0.16 TCGA-BR-8363-01 1 207851614 207851614 T A CR1L Missense_Mutation p.S117T 0.10 deleterious(0) probably_damaging(0.937) TCGA-BR-8363-01 1 209961801 209961801 G - IRF6 Frame_Shift_Del p.S457Afs*34 0.16 TCGA-BR-8363-01 1 210273768 210273768 T C SYT14 Missense_Mutation p.S421P 0.19 tolerated(0.06) benign(0.159) TCGA-BR-8363-01 1 211451507 211451507 A - RCOR3 Frame_Shift_Del p.T191Lfs*7 0.19 TCGA-BR-8363-01 1 220205738 220205738 T G EPRS Missense_Mutation p.K173N 0.19 tolerated(0.1) benign(0.009) TCGA-BR-8363-01 1 220253146 220253146 C T BPNT1 Missense_Mutation p.A15T 0.14 deleterious(0.03) benign(0.227) TCGA-BR-8363-01 1 220324662 220324662 T - RAB3GAP2 Frame_Shift_Del p.K1371Nfs*7 0.15 TCGA-BR-8363-01 1 221912436 221912436 G T DUSP10 Silent p.S217S 0.16 TCGA-BR-8363-01 1 222732052 222732052 G A TAF1A Missense_Mutation p.R435W 0.15 tolerated(0.07) possibly_damaging(0.891) TCGA-BR-8363-01 1 223568232 223568232 G A C1orf65 Missense_Mutation p.R472H 0.18 deleterious(0) probably_damaging(0.977) TCGA-BR-8363-01 1 228194794 228194794 G A WNT3A 5'UTR 0.24 TCGA-BR-8363-01 1 228334618 228334618 C T GUK1 Missense_Mutation p.S98L 0.11 tolerated(0.05) probably_damaging(0.995) TCGA-BR-8363-01 1 228528510 228528510 G A OBSCN Missense_Mutation p.R6830H 0.14 probably_damaging(0.959) TCGA-BR-8363-01 1 229772442 229772442 A G URB2 Silent p.E694E 0.12 TCGA-BR-8363-01 1 23189542 23189542 G A EPHB2 Missense_Mutation p.G275E 0.17 deleterious(0) probably_damaging(0.969) TCGA-BR-8363-01 1 231954090 231954090 C T DISC1 Missense_Mutation p.T603M 0.18 deleterious(0.04) possibly_damaging(0.543) TCGA-BR-8363-01 1 235292061 235292061 C T TOMM20 5'UTR 0.14 TCGA-BR-8363-01 1 235884191 235884191 T C LYST Silent p.V3110V 0.17 TCGA-BR-8363-01 1 237026853 237026853 C T MTR Nonsense_Mutation p.R802* 0.14 TCGA-BR-8363-01 1 237540729 237540729 G A RYR2 Silent p.R190R 0.18 TCGA-BR-8363-01 1 237957207 237957207 G A RYR2 Missense_Mutation p.R4608Q 0.21 possibly_damaging(0.836) TCGA-BR-8363-01 1 240370469 240370469 C A FMN2 Missense_Mutation p.S786Y 0.15 unknown(0) TCGA-BR-8363-01 1 240371913 240371913 G A FMN2 Silent p.L1267L 0.20 TCGA-BR-8363-01 1 24124675 24124675 C A GALE Missense_Mutation p.G95C 0.14 deleterious(0) probably_damaging(0.995) TCGA-BR-8363-01 1 241667467 241667467 A G FH Missense_Mutation p.M328T 0.14 deleterious(0) benign(0.06) TCGA-BR-8363-01 1 243327673 243327673 A T CEP170 Missense_Mutation p.F1197I 0.16 tolerated(0.33) benign(0.002) TCGA-BR-8363-01 1 243542116 243542116 A C SDCCAG8 Silent p.R523R 0.14 TCGA-BR-8363-01 1 246811064 246811064 A G CNST Missense_Mutation p.I521V 0.18 deleterious(0.05) benign(0.001) TCGA-BR-8363-01 1 247062790 247062790 C T AHCTF1 Missense_Mutation p.G495E 0.14 tolerated(0.07) possibly_damaging(0.749) TCGA-BR-8363-01 1 247751729 247751729 A G OR2G2 Missense_Mutation p.Y23C 0.18 deleterious(0.01) possibly_damaging(0.571) TCGA-BR-8363-01 1 247752185 247752185 G A OR2G2 Missense_Mutation p.R175H 0.18 tolerated(0.59) benign(0.01) TCGA-BR-8363-01 1 247978944 247978944 A G OR14A16 Silent p.L30L 0.17 TCGA-BR-8363-01 1 248202164 248202164 T G OR2L2 Missense_Mutation p.F199V 0.16 deleterious(0.04) probably_damaging(0.948) TCGA-BR-8363-01 1 248525492 248525492 C T OR2T4 Missense_Mutation p.R204W 0.15 deleterious(0.01) benign(0.082) TCGA-BR-8363-01 1 248569368 248569368 C T OR2T1 Missense_Mutation p.H25Y 0.15 tolerated_low_confidence(1) benign(0) TCGA-BR-8363-01 1 26349763 26349763 G A EXTL1 Missense_Mutation p.G209D 0.24 deleterious(0.01) probably_damaging(0.991) TCGA-BR-8363-01 1 27106804 27106804 C - ARID1A Frame_Shift_Del p.F2141Sfs*59 0.12 TCGA-BR-8363-01 1 29362428 29362428 T - EPB41 Frame_Shift_Del p.F487Sfs*3 0.08 TCGA-BR-8363-01 1 29447764 29447764 G T TMEM200B Missense_Mutation p.P193T 0.17 deleterious(0.03) benign(0.154) TCGA-BR-8363-01 1 33402512 33402512 G T RNF19B Silent p.T698T 0.19 TCGA-BR-8363-01 1 33612805 33612805 C T TRIM62 Silent p.P467P 0.12 TCGA-BR-8363-01 1 33957049 33957049 T C ZSCAN20 Silent p.G397G 0.20 TCGA-BR-8363-01 1 34164385 34164385 C T CSMD2 Missense_Mutation p.R1258Q 0.19 deleterious(0) probably_damaging(0.99) TCGA-BR-8363-01 1 35369944 35369944 G A DLGAP3 Silent p.A347A 0.20 TCGA-BR-8363-01 1 35658417 35658417 C T SFPQ Silent p.P78P 0.27 TCGA-BR-8363-01 1 36915996 36915996 G A OSCP1 5'UTR 0.12 TCGA-BR-8363-01 1 39876236 39876236 A G KIAA0754 5'UTR 0.17 TCGA-BR-8363-01 1 39910383 39910383 T C MACF1 Missense_Mutation p.L4435P 0.13 probably_damaging(0.997) TCGA-BR-8363-01 1 40030385 40030385 G A PABPC4 Missense_Mutation p.R436C 0.18 deleterious(0.02) benign(0.046) TCGA-BR-8363-01 1 40149648 40149648 G A HPCAL4 Silent p.D113D 0.19 TCGA-BR-8363-01 1 40236206 40236206 G A OXCT2 Missense_Mutation p.T241M 0.12 deleterious(0.01) probably_damaging(0.965) TCGA-BR-8363-01 1 41979244 41979244 G - HIVEP3 Frame_Shift_Del p.P1883Rfs*42 0.23 TCGA-BR-8363-01 1 44468043 44468043 C T SLC6A9 Missense_Mutation p.A375T 0.13 deleterious(0) probably_damaging(1) TCGA-BR-8363-01 1 44468551 44468551 T C SLC6A9 Missense_Mutation p.I306V 0.18 tolerated(0.37) possibly_damaging(0.466) TCGA-BR-8363-01 1 52226377 52226377 G A OSBPL9 Missense_Mutation p.V210I 0.14 tolerated(0.24) probably_damaging(0.99) TCGA-BR-8363-01 1 55562631 55562631 T C USP24 Missense_Mutation p.D1977G 0.14 deleterious(0) possibly_damaging(0.849) TCGA-BR-8363-01 1 5924015 5924015 G A NPHP4 Missense_Mutation p.R1359W 0.18 deleterious(0.02) possibly_damaging(0.814) TCGA-BR-8363-01 1 6209393 6209393 G A CHD5 Silent p.C358C 0.14 TCGA-BR-8363-01 1 63789108 63789108 G A FOXD3 Missense_Mutation p.A127T 0.25 tolerated(0.47) possibly_damaging(0.483) TCGA-BR-8363-01 1 6648463 6648463 C T ZBTB48 Missense_Mutation p.R548W 0.13 deleterious(0) probably_damaging(0.985) TCGA-BR-8363-01 1 6662470 6662470 G A KLHL21 Silent p.A136A 0.22 TCGA-BR-8363-01 1 68171150 68171151 - T GNG12 Frame_Shift_Ins p.T68Nfs*9 0.12 TCGA-BR-8363-01 1 70698020 70698020 C A SRSF11 Missense_Mutation p.P136H 0.14 deleterious(0) unknown(0) TCGA-BR-8363-01 1 74929169 74929170 - T TNNI3K Frame_Shift_Ins p.G788Wfs*21 0.12 TCGA-BR-8363-01 1 7805020 7805020 A G CAMTA1 Silent p.T1436T 0.18 TCGA-BR-8363-01 1 87040313 87040313 C T CLCA4 Missense_Mutation p.L520F 0.22 tolerated(0.08) benign(0.443) TCGA-BR-8363-01 1 91180162 91180162 C T BARHL2 Silent p.V259V 0.14 TCGA-BR-8363-01 1 9804579 9804579 C T CLSTN1 Missense_Mutation p.A370T 0.19 tolerated(0.09) possibly_damaging(0.882) TCGA-BR-8363-01 20 10026338 10026338 T G ANKEF1 Silent p.A271A 0.18 TCGA-BR-8363-01 20 10036204 10036204 C T ANKEF1 Nonsense_Mutation p.R743* 0.14 TCGA-BR-8363-01 20 17639535 17639536 - T RRBP1 Intron 0.16 TCGA-BR-8363-01 20 19701764 19701764 C T SLC24A3 Missense_Mutation p.P639S 0.16 deleterious(0) probably_damaging(1) TCGA-BR-8363-01 20 19972890 19972890 C T RIN2 Missense_Mutation p.T765I 0.17 tolerated(0.31) benign(0.005) TCGA-BR-8363-01 20 20349795 20349795 A G INSM1 Missense_Mutation p.Y295C 0.12 deleterious(0) probably_damaging(0.926) TCGA-BR-8363-01 20 21492611 21492611 G - NKX2-2 Frame_Shift_Del p.Q258Sfs*59 0.19 TCGA-BR-8363-01 20 21493107 21493107 G A NKX2-2 Silent p.A92A 0.35 TCGA-BR-8363-01 20 23065518 23065518 G - CD93 Frame_Shift_Del p.L438Sfs*150 0.09 TCGA-BR-8363-01 20 25257947 25257947 G A PYGB Silent p.L280L 0.17 TCGA-BR-8363-01 20 25456869 25456869 C A NINL Missense_Mutation p.G1020W 0.19 tolerated(0.1) benign(0.406) TCGA-BR-8363-01 20 25457248 25457248 G A NINL Silent p.P893P 0.19 TCGA-BR-8363-01 20 259839 259839 G T C20orf96 Missense_Mutation p.L147M 0.19 tolerated(1) benign(0.013) TCGA-BR-8363-01 20 30064348 30064348 A C REM1 Missense_Mutation p.S34R 0.18 tolerated(0.59) benign(0.025) TCGA-BR-8363-01 20 31023219 31023219 C T ASXL1 Missense_Mutation p.P902S 0.16 tolerated_low_confidence(0.49) benign(0.154) TCGA-BR-8363-01 20 31040055 31040055 T C C20orf112 Silent p.T358T 0.19 TCGA-BR-8363-01 20 31315724 31315724 T A COMMD7 Nonsense_Mutation p.K73* 0.18 TCGA-BR-8363-01 20 31389173 31389173 T C DNMT3B Missense_Mutation p.F696L 0.26 deleterious(0) probably_damaging(0.992) TCGA-BR-8363-01 20 3299036 3299036 G A C20orf194 Silent p.A456A 0.17 TCGA-BR-8363-01 20 36361416 36361416 A - CTNNBL1 Frame_Shift_Del p.R58Gfs*25 0.22 TCGA-BR-8363-01 20 36627613 36627613 G - TTI1 Frame_Shift_Del p.L924Wfs*37 0.11 TCGA-BR-8363-01 20 36779433 36779433 C A TGM2 Nonsense_Mutation p.E154* 0.17 TCGA-BR-8363-01 20 36779450 36779450 A C TGM2 Missense_Mutation p.V148G 0.18 deleterious(0) probably_damaging(0.956) TCGA-BR-8363-01 20 36870054 36870054 T - KIAA1755 Frame_Shift_Del p.N160Ifs*8 0.17 TCGA-BR-8363-01 20 3732766 3732766 A G HSPA12B Missense_Mutation p.S672G 0.12 tolerated(0.34) benign(0.003) TCGA-BR-8363-01 20 3766572 3766572 C T CENPB Missense_Mutation p.A187T 0.13 tolerated(0.12) unknown(0) TCGA-BR-8363-01 20 44505691 44505691 G A ZSWIM3 Missense_Mutation p.G165D 0.17 tolerated(0.43) benign(0.005) TCGA-BR-8363-01 20 48524813 48524813 C T SPATA2 Missense_Mutation p.S72N 0.19 tolerated(1) benign(0.008) TCGA-BR-8363-01 20 49211196 49211196 T C FAM65C Silent p.T698T 0.18 TCGA-BR-8363-01 20 5283318 5283318 C T PROKR2 Missense_Mutation p.A175T 0.08 tolerated(0.39) benign(0.013) TCGA-BR-8363-01 20 5564949 5564949 G A GPCPD1 Silent p.D109D 0.16 TCGA-BR-8363-01 20 56993331 56993331 T - VAPB Frame_Shift_Del p.F42Lfs*3 0.17 TCGA-BR-8363-01 20 57769284 57769284 T C ZNF831 Silent p.G1070G 0.13 TCGA-BR-8363-01 20 60714763 60714763 T A PSMA7 Intron 0.18 TCGA-BR-8363-01 20 61512442 61512442 G A DIDO1 Silent p.G1622G 0.18 TCGA-BR-8363-01 20 61869290 61869290 G - BIRC7 Frame_Shift_Del p.G130Afs*233 0.20 TCGA-BR-8363-01 20 62076690 62076690 C T KCNQ2 Missense_Mutation p.V139M 0.13 tolerated(0.17) probably_damaging(0.999) TCGA-BR-8363-01 20 62576024 62576024 G A UCKL1 Missense_Mutation p.R240W 0.14 deleterious(0) probably_damaging(0.999) TCGA-BR-8363-01 20 62837074 62837074 T C MYT1 Silent p.D106D 0.20 TCGA-BR-8363-01 21 15889284 15889284 T - SAMSN1 Frame_Shift_Del p.M138* 0.13 TCGA-BR-8363-01 21 16338052 16338052 C T NRIP1 Missense_Mutation p.R821Q 0.12 tolerated(0.29) probably_damaging(0.997) TCGA-BR-8363-01 21 17443679 17443679 G A LINC00478 RNA 0.17 TCGA-BR-8363-01 21 26979747 26979747 C T MRPL39 Nonsense_Mutation p.W14* 0.14 TCGA-BR-8363-01 21 28306794 28306794 T - ADAMTS5 Frame_Shift_Del p.K560Nfs*108 0.16 TCGA-BR-8363-01 21 30714967 30714967 G A BACH1 Missense_Mutation p.R675Q 0.18 tolerated(0.17) benign(0.011) TCGA-BR-8363-01 21 31691902 31691902 T G KRTAP26-1 Missense_Mutation p.K151T 0.14 tolerated(0.6) benign(0) TCGA-BR-8363-01 21 31914183 31914183 C T KRTAP19-6 5'UTR 0.20 TCGA-BR-8363-01 21 32410527 32410527 G T KRTAP19-8 3'UTR 0.11 TCGA-BR-8363-01 21 33318443 33318443 G A HUNK Missense_Mutation p.A236T 0.13 deleterious(0.01) probably_damaging(0.966) TCGA-BR-8363-01 21 33982209 33982209 T - AP000275.65 Frame_Shift_Del p.K82Nfs*27 0.12 TCGA-BR-8363-01 21 34721569 34721569 G T IFNAR1 Nonsense_Mutation p.E321* 0.16 TCGA-BR-8363-01 21 38308845 38308845 G T HLCS Silent p.P300P 0.20 TCGA-BR-8363-01 21 38525304 38525304 T C TTC3 Missense_Mutation p.C823R 0.14 tolerated(0.93) benign(0.271) TCGA-BR-8363-01 21 39493330 39493330 G A DSCR4 Missense_Mutation p.T7M 0.12 possibly_damaging(0.897) TCGA-BR-8363-01 21 39671647 39671647 T C KCNJ15 Missense_Mutation p.L155S 0.19 deleterious(0) probably_damaging(0.999) TCGA-BR-8363-01 21 40181960 40181960 T C ETS2 Translation_Start_Site p.M1? 0.16 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-BR-8363-01 21 43411690 43411690 C T ZBTB21 Missense_Mutation p.V839I 0.16 tolerated(0.44) benign(0.002) TCGA-BR-8363-01 21 43863456 43863456 G A UBASH3A Missense_Mutation p.E556K 0.12 deleterious(0) probably_damaging(1) TCGA-BR-8363-01 21 44448975 44448975 A G PKNOX1 Missense_Mutation p.M364V 0.15 tolerated(0.22) benign(0.001) TCGA-BR-8363-01 21 44836942 44836942 G - SIK1 Frame_Shift_Del p.Q678Sfs*8 0.56 TCGA-BR-8363-01 21 45563112 45563112 G A C21orf33 Missense_Mutation p.A183T 0.18 deleterious(0.02) probably_damaging(0.957) TCGA-BR-8363-01 21 45655413 45655413 G - ICOSLG Frame_Shift_Del p.H147Tfs*15 0.20 TCGA-BR-8363-01 21 46233871 46233871 G - SUMO3 Intron 0.16 TCGA-BR-8363-01 21 46702346 46702346 T C POFUT2 Missense_Mutation p.R186G 0.10 tolerated(0.16) possibly_damaging(0.675) TCGA-BR-8363-01 21 48019327 48019327 G T S100B Silent p.A76A 0.17 TCGA-BR-8363-01 22 18064145 18064145 G A SLC25A18 Silent p.T55T 0.15 TCGA-BR-8363-01 22 18389447 18389447 C A MICAL3 Missense_Mutation p.K44N 0.15 benign(0.04) TCGA-BR-8363-01 22 19965081 19965081 C T ARVCF Missense_Mutation p.R576Q 0.19 deleterious(0) probably_damaging(0.997) TCGA-BR-8363-01 22 20094896 20094896 G - DGCR8 Frame_Shift_Del p.R700Lfs*16 0.13 TCGA-BR-8363-01 22 20130875 20130875 C T ZDHHC8 Silent p.G574G 0.24 TCGA-BR-8363-01 22 20786261 20786261 G A SCARF2 Missense_Mutation p.T63M 0.20 tolerated(0.05) benign(0.202) TCGA-BR-8363-01 22 21322261 21322261 C T AIFM3 Missense_Mutation p.P10L 0.12 deleterious_low_confidence(0) possibly_damaging(0.835) TCGA-BR-8363-01 22 21384146 21384146 C A SLC7A4 Missense_Mutation p.G493C 0.16 tolerated(0.16) benign(0.003) TCGA-BR-8363-01 22 22842026 22842026 T - ZNF280B 3'UTR 0.19 TCGA-BR-8363-01 22 23503094 23503094 C T RAB36 Silent p.R282R 0.13 TCGA-BR-8363-01 22 24034818 24034818 A - RGL4 Intron 0.13 TCGA-BR-8363-01 22 24086127 24086127 G A ZNF70 Missense_Mutation p.R401W 0.18 deleterious(0) probably_damaging(0.957) TCGA-BR-8363-01 22 24629866 24629866 A T GGT5 Missense_Mutation p.F94I 0.16 deleterious(0) probably_damaging(1) TCGA-BR-8363-01 22 24982323 24982323 C T FAM211B Missense_Mutation p.G160D 0.15 deleterious(0) probably_damaging(1) TCGA-BR-8363-01 22 29750678 29750678 T C AP1B1 Missense_Mutation p.Y300C 0.13 deleterious(0) probably_damaging(1) TCGA-BR-8363-01 22 31322775 31322776 CT - MORC2 3'UTR 0.17 TCGA-BR-8363-01 22 31487726 31487726 A G SMTN Missense_Mutation p.I509V 0.10 tolerated(0.36) benign(0.034) TCGA-BR-8363-01 22 32241050 32241050 C A DEPDC5 Missense_Mutation p.P941T 0.14 deleterious(0) probably_damaging(0.999) TCGA-BR-8363-01 22 34157419 34157419 C T LARGE Silent p.S15S 0.13 TCGA-BR-8363-01 22 35689659 35689659 G T HMGXB4 3'UTR 0.13 TCGA-BR-8363-01 22 36745257 36745257 A G MYH9 Missense_Mutation p.Y9H 0.22 possibly_damaging(0.836) TCGA-BR-8363-01 22 36916708 36916708 G A EIF3D Missense_Mutation p.R165C 0.25 deleterious(0) probably_damaging(0.973) TCGA-BR-8363-01 22 38948670 38948670 C T DMC1 Splice_Site p.X141_splice 0.11 TCGA-BR-8363-01 22 40657998 40657998 C T TNRC6B Missense_Mutation p.P93L 0.19 deleterious(0) probably_damaging(0.999) TCGA-BR-8363-01 22 41575031 41575031 T - EP300 3'UTR 0.13 TCGA-BR-8363-01 22 41613326 41613326 A G L3MBTL2 Intron 0.27 TCGA-BR-8363-01 22 43569788 43569788 C T TTLL12 Missense_Mutation p.R425H 0.18 deleterious(0) probably_damaging(1) TCGA-BR-8363-01 22 44547380 44547380 G A PARVB Silent p.V297V 0.13 TCGA-BR-8363-01 22 47188435 47188435 T C TBC1D22A Silent p.G27G 0.16 TCGA-BR-8363-01 22 48885456 48885456 A G FAM19A5 Missense_Mutation p.S18G 0.13 tolerated(0.5) benign(0.05) TCGA-BR-8363-01 22 50877036 50877036 C - PPP6R2 Frame_Shift_Del p.H634Mfs*72 0.15 TCGA-BR-8363-01 22 50882688 50882688 C A PPP6R2 3'UTR 0.14 TCGA-BR-8363-01 22 50905867 50905867 C T SBF1 Missense_Mutation p.G150D 0.16 deleterious(0) probably_damaging(0.971) TCGA-BR-8363-01 22 50967711 50967711 G C TYMP Missense_Mutation p.L91V 0.13 deleterious(0) probably_damaging(0.98) TCGA-BR-8363-01 22 51065641 51065641 G - ARSA Frame_Shift_Del p.H140Ifs*8 0.22 TCGA-BR-8363-01 22 51207481 51207481 A - RABL2B Frame_Shift_Del p.Q203Rfs*91 0.12 TCGA-BR-8363-01 2 101624336 101624337 TT - TBC1D8 Frame_Shift_Del p.K1123Nfs*3 0.16 TCGA-BR-8363-01 2 102805737 102805737 G - IL1RL2 Frame_Shift_Del p.D89Tfs*9 0.16 TCGA-BR-8363-01 2 105979823 105979823 G A FHL2 Missense_Mutation p.R203C 0.11 deleterious(0) probably_damaging(0.952) TCGA-BR-8363-01 2 10904470 10904471 - T ATP6V1C2 Frame_Shift_Ins p.V101Cfs*5 0.20 TCGA-BR-8363-01 2 110015388 110015388 G T SH3RF3 Missense_Mutation p.A430S 0.13 deleterious(0.01) possibly_damaging(0.653) TCGA-BR-8363-01 2 11052611 11052611 G A KCNF1 Missense_Mutation p.S20N 0.20 tolerated(0.1) benign(0) TCGA-BR-8363-01 2 11053197 11053197 C T KCNF1 Silent p.N215N 0.19 TCGA-BR-8363-01 2 112621367 112621367 A G ANAPC1 Missense_Mutation p.S313P 0.16 tolerated(0.05) probably_damaging(0.997) TCGA-BR-8363-01 2 113820192 113820192 C A IL36RN Missense_Mutation p.L136I 0.20 tolerated(0.2) benign(0.007) TCGA-BR-8363-01 2 11389837 11389837 A - ROCK2 Frame_Shift_Del p.W138Gfs*31 0.17 TCGA-BR-8363-01 2 125192241 125192241 G T CNTNAP5 Missense_Mutation p.R237M 0.18 deleterious(0) probably_damaging(0.923) TCGA-BR-8363-01 2 128345990 128345990 G A MYO7B Missense_Mutation p.V572M 0.25 tolerated(0.14) benign(0.051) TCGA-BR-8363-01 2 131704276 131704276 C A ARHGEF4 Intron 0.19 TCGA-BR-8363-01 2 133540748 133540748 A T NCKAP5 Missense_Mutation p.D1212E 0.20 tolerated(0.4) benign(0.031) TCGA-BR-8363-01 2 135738531 135738531 C A MAP3K19 Missense_Mutation p.M1260I 0.09 deleterious(0) probably_damaging(0.999) TCGA-BR-8363-01 2 136719000 136719000 G T DARS Missense_Mutation p.H96N 0.20 tolerated(0.47) benign(0) TCGA-BR-8363-01 2 145156721 145156721 G A ZEB2 Missense_Mutation p.S678F 0.21 deleterious(0) possibly_damaging(0.798) TCGA-BR-8363-01 2 148657041 148657041 A - ACVR2A Frame_Shift_Del p.D96Tfs*54 0.23 TCGA-BR-8363-01 2 152107949 152107949 C T RBM43 Missense_Mutation p.S182N 0.17 deleterious(0.04) possibly_damaging(0.904) TCGA-BR-8363-01 2 159077217 159077217 T - CCDC148 Frame_Shift_Del p.K420Nfs*15 0.11 TCGA-BR-8363-01 2 16085828 16085828 C T MYCN Missense_Mutation p.P335L 0.29 deleterious(0.02) probably_damaging(0.964) TCGA-BR-8363-01 2 164467312 164467312 T C FIGN Missense_Mutation p.T344A 0.12 tolerated(0.76) benign(0.002) TCGA-BR-8363-01 2 1652323 1652323 C A PXDN Missense_Mutation p.V1077F 0.11 deleterious(0) possibly_damaging(0.551) TCGA-BR-8363-01 2 166164371 166164371 C G SCN2A Missense_Mutation p.L134V 0.13 tolerated(0.12) possibly_damaging(0.81) TCGA-BR-8363-01 2 166535566 166535566 G A CSRNP3 Missense_Mutation p.S354N 0.17 deleterious(0.03) benign(0.288) TCGA-BR-8363-01 2 170034507 170034507 T C LRP2 Missense_Mutation p.H3400R 0.21 benign(0.443) TCGA-BR-8363-01 2 170592513 170592513 C T KLHL23 Missense_Mutation p.T330M 0.17 deleterious(0.01) probably_damaging(0.997) TCGA-BR-8363-01 2 172841220 172841220 G T HAT1 Missense_Mutation p.E316D 0.14 tolerated(0.11) benign(0.004) TCGA-BR-8363-01 2 173337581 173337581 T C ITGA6 Intron 0.13 TCGA-BR-8363-01 2 178977345 178977345 C T RBM45 Silent p.P24P 0.22 TCGA-BR-8363-01 2 179400220 179400220 A C TTN Missense_Mutation p.L33708V 0.15 TCGA-BR-8363-01 2 179437337 179437337 T C TTN Missense_Mutation p.K24508E 0.21 TCGA-BR-8363-01 2 179446674 179446674 G C TTN Missense_Mutation p.P22141R 0.16 TCGA-BR-8363-01 2 179454780 179454780 C T TTN Missense_Mutation p.A20558T 0.19 TCGA-BR-8363-01 2 179469822 179469822 T - TTN Frame_Shift_Del p.T18028Lfs*57 0.17 TCGA-BR-8363-01 2 179498051 179498051 G A TTN Nonsense_Mutation p.R14317* 0.15 TCGA-BR-8363-01 2 182784165 182784165 G A SSFA2 Missense_Mutation p.A1046T 0.16 tolerated(0.9) benign(0.008) TCGA-BR-8363-01 2 191797646 191797646 T - GLS Intron 0.21 TCGA-BR-8363-01 2 201436289 201436289 A - SGOL2 Frame_Shift_Del p.K409Rfs*52 0.18 TCGA-BR-8363-01 2 204305797 204305798 - G RAPH1 Frame_Shift_Ins p.N706Qfs*217 0.19 TCGA-BR-8363-01 2 204309513 204309513 A G RAPH1 Intron 0.22 TCGA-BR-8363-01 2 206110504 206110504 C T PARD3B Missense_Mutation p.P653S 0.17 tolerated(0.1) benign(0.029) TCGA-BR-8363-01 2 206166502 206166503 - A PARD3B Intron 0.17 TCGA-BR-8363-01 2 207174428 207174428 A - ZDBF2 Frame_Shift_Del p.K1728Nfs*5 0.27 TCGA-BR-8363-01 2 211473216 211473216 G A CPS1 Missense_Mutation p.R781H 0.12 deleterious(0) probably_damaging(0.999) TCGA-BR-8363-01 2 21238054 21238054 T G APOB Missense_Mutation p.D1196A 0.21 benign(0.006) TCGA-BR-8363-01 2 212426794 212426794 C T ERBB4 Missense_Mutation p.S774N 0.11 deleterious(0.01) probably_damaging(0.994) TCGA-BR-8363-01 2 213871973 213871974 - A IKZF2 3'UTR 0.29 TCGA-BR-8363-01 2 215835098 215835098 T C ABCA12 Silent p.P1863P 0.13 TCGA-BR-8363-01 2 218757703 218757703 C T TNS1 Silent p.A125A 0.10 TCGA-BR-8363-01 2 220136510 220136510 T C TUBA4B RNA 0.17 TCGA-BR-8363-01 2 220329302 220329302 G A SPEG Silent p.R951R 0.10 TCGA-BR-8363-01 2 220342493 220342493 C A SPEG Missense_Mutation p.H1604Q 0.14 benign(0.077) TCGA-BR-8363-01 2 220439918 220439918 T C INHA Silent p.A257A 0.20 TCGA-BR-8363-01 2 227662289 227662289 G A IRS1 Missense_Mutation p.P389L 0.21 deleterious(0.02) probably_damaging(0.998) TCGA-BR-8363-01 2 232011035 232011035 A G PSMD1 Missense_Mutation p.I694V 0.15 tolerated(1) benign(0.012) TCGA-BR-8363-01 2 232390057 232390057 C A NMUR1 Missense_Mutation p.W326C 0.19 deleterious(0) probably_damaging(0.968) TCGA-BR-8363-01 2 233321171 233321171 C T ALPI Silent p.G60G 0.15 TCGA-BR-8363-01 2 233626135 233626135 G A GIGYF2 Missense_Mutation p.R174Q 0.23 probably_damaging(0.992) TCGA-BR-8363-01 2 237028961 237028961 C T AGAP1 Missense_Mutation p.T747M 0.17 tolerated(0.12) benign(0.141) TCGA-BR-8363-01 2 239344627 239344627 G A ASB1 Missense_Mutation p.R156Q 0.13 tolerated(0.47) probably_damaging(0.953) TCGA-BR-8363-01 2 242196134 242196134 T - HDLBP Frame_Shift_Del p.T180Lfs*48 0.19 TCGA-BR-8363-01 2 24962359 24962359 G A NCOA1 Missense_Mutation p.G1087D 0.14 deleterious(0.02) benign(0.368) TCGA-BR-8363-01 2 26800479 26800479 C - C2orf70 Frame_Shift_Del p.L150Sfs*17 0.14 TCGA-BR-8363-01 2 27530383 27530383 G A UCN 3'UTR 0.18 TCGA-BR-8363-01 2 30998797 30998797 C T CAPN13 Missense_Mutation p.R129Q 0.20 tolerated(0.27) benign(0.136) TCGA-BR-8363-01 2 32688342 32688342 G A BIRC6 Missense_Mutation p.A1612T 0.23 probably_damaging(0.989) TCGA-BR-8363-01 2 32740190 32740192 CCT - BIRC6 In_Frame_Del p.P3570del 0.14 TCGA-BR-8363-01 2 33568029 33568029 G C LTBP1 Silent p.V1285V 0.18 TCGA-BR-8363-01 2 36775895 36775895 C T CRIM1 3'UTR 0.17 TCGA-BR-8363-01 2 38908522 38908522 C T GALM Missense_Mutation p.T149I 0.15 tolerated(0.1) possibly_damaging(0.679) TCGA-BR-8363-01 2 47639588 47639588 A - MSH2 Frame_Shift_Del p.A230Lfs*16 0.14 TCGA-BR-8363-01 2 48602420 48602420 A G FOXN2 Silent p.K378K 0.14 TCGA-BR-8363-01 2 49210274 49210274 G A FSHR Missense_Mutation p.H186Y 0.15 deleterious(0.02) benign(0.008) TCGA-BR-8363-01 2 54856337 54856337 G A SPTBN1 Missense_Mutation p.G689D 0.20 deleterious(0.04) probably_damaging(0.978) TCGA-BR-8363-01 2 54895586 54895586 C T SPTBN1 Silent p.R2325R 0.10 TCGA-BR-8363-01 2 55544436 55544436 T - CCDC88A Frame_Shift_Del p.M1217Cfs*4 0.15 TCGA-BR-8363-01 2 60688902 60688902 C T BCL11A Missense_Mutation p.C382Y 0.14 deleterious(0) benign(0.384) TCGA-BR-8363-01 2 60995979 60995980 - T PAPOLG Frame_Shift_Ins p.E134* 0.15 TCGA-BR-8363-01 2 65296702 65296702 C - CEP68 Frame_Shift_Del p.P43Hfs*49 0.18 TCGA-BR-8363-01 2 65305048 65305048 T C CEP68 Missense_Mutation p.V685A 0.19 deleterious(0) probably_damaging(0.992) TCGA-BR-8363-01 2 69034514 69034514 C A ARHGAP25 Silent p.G192G 0.14 TCGA-BR-8363-01 2 69748102 69748102 G A AAK1 Silent p.P358P 0.19 TCGA-BR-8363-01 2 70922922 70922922 G A ADD2 Silent p.S162S 0.24 TCGA-BR-8363-01 2 71708055 71708055 C A DYSF Missense_Mutation p.P45H 0.14 deleterious(0) probably_damaging(1) TCGA-BR-8363-01 2 74513011 74513011 T G SLC4A5 Missense_Mutation p.Q97P 0.14 deleterious(0.01) benign(0.224) TCGA-BR-8363-01 2 74754869 74754869 G - AUP1 Frame_Shift_Del p.Q279Sfs*48 0.14 TCGA-BR-8363-01 2 75116469 75116469 G A HK2 Missense_Mutation p.V825M 0.16 deleterious(0.04) possibly_damaging(0.868) TCGA-BR-8363-01 2 79386462 79386462 C A REG3A Missense_Mutation p.V24F 0.15 tolerated(0.07) benign(0.093) TCGA-BR-8363-01 2 8870844 8870844 T - KIDINS220 3'UTR 0.11 TCGA-BR-8363-01 2 96950779 96950779 C T SNRNP200 Intron 0.25 TCGA-BR-8363-01 2 97368931 97368931 C T LMAN2L 3'Flank 0.22 TCGA-BR-8363-01 2 97751467 97751467 G A FAHD2B Silent p.G218G 0.16 TCGA-BR-8363-01 3 107491837 107491837 C T BBX Silent p.P423P 0.13 TCGA-BR-8363-01 3 108124288 108124288 G A MYH15 Missense_Mutation p.R1565C 0.18 deleterious(0.03) benign(0.115) TCGA-BR-8363-01 3 108129761 108129761 T A MYH15 Missense_Mutation p.R1408S 0.08 deleterious(0.01) possibly_damaging(0.538) TCGA-BR-8363-01 3 113723471 113723471 G A KIAA1407 Intron 0.17 TCGA-BR-8363-01 3 113729626 113729626 T - KIAA1407 Frame_Shift_Del p.N469Mfs*44 0.19 TCGA-BR-8363-01 3 114058003 114058003 G - ZBTB20 Frame_Shift_Del p.P692Lfs*43 0.11 TCGA-BR-8363-01 3 115561349 115561349 C T LSAMP Silent p.S242S 0.16 TCGA-BR-8363-01 3 118943093 118943093 C A B4GALT4 Splice_Site p.X163_splice 0.19 TCGA-BR-8363-01 3 119133473 119133473 G A ARHGAP31 Silent p.Q899Q 0.05 TCGA-BR-8363-01 3 119187814 119187814 G T POGLUT1 5'UTR 0.45 TCGA-BR-8363-01 3 119466108 119466108 C T MAATS1 Silent p.S683S 0.10 TCGA-BR-8363-01 3 119887170 119887170 C A GPR156 Missense_Mutation p.R385M 0.14 deleterious(0) probably_damaging(0.935) TCGA-BR-8363-01 3 121416803 121416804 - C GOLGB1 Frame_Shift_Ins p.A856Gfs*10 0.19 TCGA-BR-8363-01 3 122418640 122418640 A - PARP14 Frame_Shift_Del p.N415Mfs*3 0.16 TCGA-BR-8363-01 3 122471515 122471515 A G HSPBAP1 Missense_Mutation p.F250L 0.12 tolerated(0.39) benign(0.107) TCGA-BR-8363-01 3 124811006 124811006 A G SLC12A8 Missense_Mutation p.V581A 0.06 deleterious(0.02) benign(0.002) TCGA-BR-8363-01 3 125266321 125266321 G A OSBPL11 Silent p.N590N 0.20 TCGA-BR-8363-01 3 125691012 125691012 G A ROPN1B Missense_Mutation p.D39N 0.20 tolerated(0.09) benign(0.219) TCGA-BR-8363-01 3 12626102 12626102 C T RAF1 Missense_Mutation p.A620T 0.13 tolerated(0.27) benign(0.052) TCGA-BR-8363-01 3 126707946 126707946 G A PLXNA1 Silent p.A170A 0.15 TCGA-BR-8363-01 3 126735448 126735448 C A PLXNA1 Missense_Mutation p.L1035I 0.18 tolerated(0.88) possibly_damaging(0.771) TCGA-BR-8363-01 3 128809965 128809965 C T RAB43 Missense_Mutation p.G205R 0.12 tolerated(0.52) benign(0.002) TCGA-BR-8363-01 3 129251458 129251458 C T RHO Missense_Mutation p.A260V 0.20 deleterious(0) benign(0.127) TCGA-BR-8363-01 3 12977365 12977365 C T IQSEC1 Missense_Mutation p.R398Q 0.13 deleterious_low_confidence(0.03) benign(0.02) TCGA-BR-8363-01 3 12977560 12977560 C T IQSEC1 Missense_Mutation p.R333Q 0.18 tolerated_low_confidence(0.48) benign(0.01) TCGA-BR-8363-01 3 12978120 12978120 G A IQSEC1 Silent p.R146R 0.26 TCGA-BR-8363-01 3 131082241 131082241 G C NUDT16P1 RNA 0.14 TCGA-BR-8363-01 3 134251733 134251733 A - CEP63 Frame_Shift_Del p.I146* 0.13 TCGA-BR-8363-01 3 136287655 136287655 C T STAG1 Missense_Mutation p.A116T 0.10 deleterious(0.01) benign(0.271) TCGA-BR-8363-01 3 138193142 138193142 C T ESYT3 Missense_Mutation p.R806C 0.25 deleterious(0) probably_damaging(1) TCGA-BR-8363-01 3 139279984 139279984 C A NMNAT3 Missense_Mutation p.L172F 0.10 deleterious(0) probably_damaging(0.993) TCGA-BR-8363-01 3 140409957 140409957 A C TRIM42 Missense_Mutation p.T670P 0.11 tolerated(0.19) probably_damaging(0.989) TCGA-BR-8363-01 3 141162696 141162696 C A ZBTB38 Missense_Mutation p.P489H 0.12 deleterious(0) probably_damaging(0.999) TCGA-BR-8363-01 3 141162875 141162875 A - ZBTB38 Frame_Shift_Del p.T551Qfs*6 0.14 TCGA-BR-8363-01 3 141497087 141497087 C A GRK7 5'UTR 0.12 TCGA-BR-8363-01 3 141497111 141497111 C T GRK7 5'UTR 0.12 TCGA-BR-8363-01 3 1424988 1424988 G C CNTN6 Missense_Mutation p.A805P 0.18 tolerated(0.15) probably_damaging(0.997) TCGA-BR-8363-01 3 142539750 142539750 C T PCOLCE2 Missense_Mutation p.V363I 0.25 tolerated(0.3) benign(0.015) TCGA-BR-8363-01 3 142773855 142773855 C T U2SURP Missense_Mutation p.P949S 0.17 tolerated(0.29) unknown(0) TCGA-BR-8363-01 3 143567076 143567076 A - SLC9A9 Frame_Shift_Del p.L30Cfs*7 0.11 TCGA-BR-8363-01 3 143691683 143691683 G A C3orf58 Missense_Mutation p.C170Y 0.46 deleterious(0) probably_damaging(0.999) TCGA-BR-8363-01 3 147130423 147130423 C T ZIC1 Silent p.C367C 0.12 TCGA-BR-8363-01 3 148459562 148459562 T C AGTR1 Missense_Mutation p.L247P 0.12 deleterious(0) probably_damaging(0.989) TCGA-BR-8363-01 3 148741865 148741865 C T GYG1 Missense_Mutation p.H212Y 0.12 deleterious(0) probably_damaging(0.995) TCGA-BR-8363-01 3 150128715 150128715 T C TSC22D2 Silent p.V526V 0.19 TCGA-BR-8363-01 3 150176387 150176387 G A TSC22D2 Silent p.T769T 0.05 TCGA-BR-8363-01 3 151105776 151105776 G A MED12L Missense_Mutation p.R1721H 0.13 deleterious(0.03) possibly_damaging(0.867) TCGA-BR-8363-01 3 152163087 152163087 A G MBNL1 Missense_Mutation p.Q189R 0.13 deleterious(0.02) possibly_damaging(0.888) TCGA-BR-8363-01 3 152553529 152553529 C T P2RY1 5'UTR 0.21 TCGA-BR-8363-01 3 153220306 153220306 G A C3orf79 3'UTR 0.08 TCGA-BR-8363-01 3 153840216 153840216 C - ARHGEF26 Frame_Shift_Del p.P147Rfs*19 0.11 TCGA-BR-8363-01 3 155652816 155652816 T C GMPS Silent p.H596H 0.12 TCGA-BR-8363-01 3 156009716 156009716 G A KCNAB1 Intron 0.13 TCGA-BR-8363-01 3 156009905 156009905 G A KCNAB1 Intron 0.10 TCGA-BR-8363-01 3 156232930 156232930 G A KCNAB1 Silent p.P262P 0.19 TCGA-BR-8363-01 3 157081510 157081510 C T VEPH1 Missense_Mutation p.V460M 0.19 tolerated(0.29) benign(0.004) TCGA-BR-8363-01 3 16261500 16261500 C T GALNT15 Silent p.C536C 0.15 TCGA-BR-8363-01 3 164737393 164737394 - G SI Frame_Shift_Ins p.G1141Wfs*5 0.16 TCGA-BR-8363-01 3 164905717 164905717 C T SLITRK3 Missense_Mutation p.E968K 0.12 deleterious(0) possibly_damaging(0.566) TCGA-BR-8363-01 3 169486125 169486125 G A ACTRT3 Missense_Mutation p.R72C 0.15 deleterious(0) probably_damaging(0.998) TCGA-BR-8363-01 3 169710494 169710494 G A SEC62 Silent p.L281L 0.15 TCGA-BR-8363-01 3 169710750 169710750 A G SEC62 Missense_Mutation p.T367A 0.14 tolerated(0.29) unknown(0) TCGA-BR-8363-01 3 172525679 172525679 C T ECT2 Nonsense_Mutation p.R789* 0.20 TCGA-BR-8363-01 3 178976922 178976922 T - LRRFIP1P1 RNA 0.18 TCGA-BR-8363-01 3 183858392 183858392 C T EIF2B5 Nonsense_Mutation p.R344* 0.16 TCGA-BR-8363-01 3 184295717 184295718 - C EPHB3 Frame_Shift_Ins p.L559Pfs*32 0.11 TCGA-BR-8363-01 3 185237031 185237032 CT - LIPH Frame_Shift_Del p.S262Lfs*9 0.10 TCGA-BR-8363-01 3 186362568 186362568 C T FETUB Silent p.C151C 0.10 TCGA-BR-8363-01 3 187088874 187088874 G T RTP4 Missense_Mutation p.A152S 0.17 tolerated(0.74) benign(0.133) TCGA-BR-8363-01 3 187447070 187447070 A G BCL6 Missense_Mutation p.W375R 0.16 deleterious(0) probably_damaging(0.999) TCGA-BR-8363-01 3 189608582 189608582 T A TP63 Missense_Mutation p.L553I 0.12 deleterious(0) probably_damaging(0.994) TCGA-BR-8363-01 3 194362829 194362829 T - LSG1 Frame_Shift_Del p.S649Vfs*41 0.19 TCGA-BR-8363-01 3 194366918 194366918 C T LSG1 Missense_Mutation p.R533H 0.16 deleterious(0) probably_damaging(0.986) TCGA-BR-8363-01 3 19575103 19575103 C G KCNH8 Missense_Mutation p.Q946E 0.16 tolerated_low_confidence(0.76) benign(0.006) TCGA-BR-8363-01 3 19575113 19575113 T G KCNH8 Missense_Mutation p.L949R 0.14 tolerated_low_confidence(0.08) possibly_damaging(0.572) TCGA-BR-8363-01 3 197408014 197408014 G T KIAA0226 Missense_Mutation p.L806I 0.17 deleterious(0) probably_damaging(0.996) TCGA-BR-8363-01 3 3195744 3195744 A G CRBN Missense_Mutation p.V284A 0.08 deleterious(0) possibly_damaging(0.854) TCGA-BR-8363-01 3 38035424 38035424 C T VILL Silent p.Y32Y 0.21 TCGA-BR-8363-01 3 38149177 38149177 C T DLEC1 Silent p.T989T 0.13 TCGA-BR-8363-01 3 38173437 38173437 T C ACAA1 Missense_Mutation p.Q128R 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8363-01 3 38181390 38181390 C G MYD88 Missense_Mutation p.Q135E 0.10 tolerated(0.22) benign(0.007) TCGA-BR-8363-01 3 38182798 38182799 GT - MYD88 3'UTR 0.10 TCGA-BR-8363-01 3 38739984 38739984 C T SCN10A Missense_Mutation p.R1576H 0.15 deleterious(0.01) probably_damaging(0.992) TCGA-BR-8363-01 3 38949441 38949441 T - SCN11A Frame_Shift_Del p.K491Sfs*5 0.18 TCGA-BR-8363-01 3 39230627 39230627 C T XIRP1 Missense_Mutation p.D104N 0.12 deleterious(0) probably_damaging(1) TCGA-BR-8363-01 3 40557736 40557736 T A ZNF620 Nonsense_Mutation p.C217* 0.17 TCGA-BR-8363-01 3 42701038 42701038 G A ZBTB47 Silent p.G397G 0.25 TCGA-BR-8363-01 3 43389492 43389492 G A SNRK Missense_Mutation p.G581R 0.23 deleterious_low_confidence(0.01) benign(0.357) TCGA-BR-8363-01 3 4354867 4354867 A - SETMAR Frame_Shift_Del p.G150Afs*24 0.15 TCGA-BR-8363-01 3 44893381 44893381 G T KIF15 Missense_Mutation p.Q1303H 0.20 tolerated(0.18) possibly_damaging(0.728) TCGA-BR-8363-01 3 45637055 45637055 T C LIMD1 Silent p.N228N 0.15 TCGA-BR-8363-01 3 46415362 46415362 C T CCR5 Silent p.C323C 0.19 TCGA-BR-8363-01 3 46754421 46754421 C T PRSS50 Silent p.A297A 0.15 TCGA-BR-8363-01 3 46871956 46871956 C T PRSS42 Missense_Mutation p.E274K 0.28 deleterious(0.04) probably_damaging(0.951) TCGA-BR-8363-01 3 46901099 46901099 G T MYL3 Missense_Mutation p.P116H 0.16 deleterious(0) probably_damaging(1) TCGA-BR-8363-01 3 4747965 4747965 G A ITPR1 Missense_Mutation p.R1576H 0.17 tolerated(0.05) possibly_damaging(0.789) TCGA-BR-8363-01 3 47537654 47537654 C T ELP6 Missense_Mutation p.A236T 0.13 tolerated(1) benign(0.001) TCGA-BR-8363-01 3 48699463 48699463 G A CELSR3 Missense_Mutation p.A202V 0.17 tolerated_low_confidence(1) benign(0) TCGA-BR-8363-01 3 49210244 49210244 C - KLHDC8B Frame_Shift_Del p.M17Cfs*59 0.22 TCGA-BR-8363-01 3 49459831 49459831 A G AMT Missense_Mutation p.F18S 0.14 tolerated(0.41) benign(0.003) TCGA-BR-8363-01 3 49947673 49947673 G A MON1A Missense_Mutation p.R517C 0.15 tolerated(0.08) probably_damaging(0.998) TCGA-BR-8363-01 3 52546401 52546401 C - STAB1 Frame_Shift_Del p.P978Lfs*57 0.14 TCGA-BR-8363-01 3 52740186 52740186 T G SPCS1 Missense_Mutation p.L42R 0.71 tolerated_low_confidence(0.33) benign(0.001) TCGA-BR-8363-01 3 52741730 52741730 C T SPCS1 Missense_Mutation p.R138C 0.17 deleterious(0) possibly_damaging(0.89) TCGA-BR-8363-01 3 52962274 52962274 G A SFMBT1 Silent p.A327A 0.19 TCGA-BR-8363-01 3 55922464 55922464 G A ERC2 Silent p.N839N 0.14 TCGA-BR-8363-01 3 58817526 58817526 T G C3orf67 Missense_Mutation p.E436D 0.15 tolerated(0.16) benign(0.044) TCGA-BR-8363-01 3 68802150 68802150 T G FAM19A4 Missense_Mutation p.Q50H 0.12 tolerated(0.08) possibly_damaging(0.886) TCGA-BR-8363-01 3 6903381 6903381 C T GRM7 Silent p.G102G 0.17 TCGA-BR-8363-01 3 69077434 69077434 T A TMF1 Missense_Mutation p.E869D 0.09 tolerated(0.05) benign(0.008) TCGA-BR-8363-01 3 69168250 69168250 A G LMOD3 Missense_Mutation p.M419T 0.22 tolerated(0.08) probably_damaging(0.954) TCGA-BR-8363-01 3 71804103 71804103 C T GPR27 Silent p.V301V 0.18 TCGA-BR-8363-01 3 72428231 72428231 T C RYBP Missense_Mutation p.N221D 0.16 deleterious(0.02) benign(0.029) TCGA-BR-8363-01 3 7620324 7620324 G A GRM7 Silent p.Q577Q 0.12 TCGA-BR-8363-01 3 77147246 77147246 C T ROBO2 Missense_Mutation p.T64M 0.14 deleterious(0) unknown(0) TCGA-BR-8363-01 3 8809146 8809146 G A OXTR Missense_Mutation p.A243V 0.13 tolerated(0.35) benign(0.067) TCGA-BR-8363-01 3 93755447 93755447 A - ARL13B Frame_Shift_Del p.G182Afs*16 0.16 TCGA-BR-8363-01 3 95374406 95374406 T C MTHFD2P1 RNA 0.12 TCGA-BR-8363-01 3 97686125 97686125 A G MINA Missense_Mutation p.C105R 0.13 deleterious(0.01) possibly_damaging(0.76) TCGA-BR-8363-01 3 97852335 97852335 C T OR5H1 Missense_Mutation p.P265L 0.16 tolerated(0.39) benign(0.009) TCGA-BR-8363-01 3 9883494 9883494 A G RPUSD3 Intron 0.29 TCGA-BR-8363-01 3 99569707 99569707 A G FILIP1L Silent p.H271H 0.16 TCGA-BR-8363-01 4 102951317 102951317 A - BANK1 Frame_Shift_Del p.T601Lfs*8 0.16 TCGA-BR-8363-01 4 10446745 10446746 - T ZNF518B Frame_Shift_Ins p.T403Nfs*7 0.18 TCGA-BR-8363-01 4 110223091 110223091 G A COL25A1 Missense_Mutation p.R29W 0.15 tolerated(0.26) unknown(0) TCGA-BR-8363-01 4 110608797 110608797 C T CCDC109B 3'UTR 0.14 TCGA-BR-8363-01 4 114161659 114161659 C A ANK2 Missense_Mutation p.H238N 0.13 probably_damaging(1) TCGA-BR-8363-01 4 114274836 114274836 C T ANK2 Nonsense_Mutation p.Q1688* 0.10 TCGA-BR-8363-01 4 121958509 121958509 T C NDNF Missense_Mutation p.K206R 0.18 tolerated(0.72) benign(0.002) TCGA-BR-8363-01 4 122254150 122254150 G T QRFPR Missense_Mutation p.P208H 0.16 tolerated(0.17) benign(0.053) TCGA-BR-8363-01 4 129028358 129028358 A - LARP1B Frame_Shift_Del p.K294Nfs*20 0.14 TCGA-BR-8363-01 4 134072535 134072535 A C PCDH10 Missense_Mutation p.T414P 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-BR-8363-01 4 134072536 134072536 C A PCDH10 Missense_Mutation p.T414N 0.13 deleterious(0.03) probably_damaging(0.999) TCGA-BR-8363-01 4 146563587 146563587 G A MMAA Missense_Mutation p.G171E 0.13 deleterious(0.04) possibly_damaging(0.521) TCGA-BR-8363-01 4 154702668 154702668 G A SFRP2 Missense_Mutation p.R275W 0.15 deleterious(0) probably_damaging(0.998) TCGA-BR-8363-01 4 156135999 156135999 A G NPY2R Missense_Mutation p.Y303C 0.16 deleterious(0) probably_damaging(0.986) TCGA-BR-8363-01 4 166910643 166910643 G T TLL1 Missense_Mutation p.G94C 0.22 deleterious(0) possibly_damaging(0.827) TCGA-BR-8363-01 4 170037648 170037650 CAT - SH3RF1 In_Frame_Del p.M637del 0.14 TCGA-BR-8363-01 4 170618478 170618478 T C CLCN3 Missense_Mutation p.Y386H 0.23 tolerated(1) probably_damaging(0.996) TCGA-BR-8363-01 4 1980485 1980485 C - WHSC1 Frame_Shift_Del p.P1317Rfs*12 0.09 TCGA-BR-8363-01 4 2172859 2172859 C T POLN Missense_Mutation p.R475Q 0.14 tolerated(1) benign(0.005) TCGA-BR-8363-01 4 26491091 26491091 A G CCKAR Missense_Mutation p.V43A 0.17 tolerated(0.11) benign(0.43) TCGA-BR-8363-01 4 39304169 39304169 G - RFC1 Frame_Shift_Del p.P797Lfs*4 0.12 TCGA-BR-8363-01 4 4389450 4389450 G A NSG1 Missense_Mutation p.D32N 0.09 deleterious(0) probably_damaging(0.985) TCGA-BR-8363-01 4 47559905 47559905 C T ATP10D Silent p.P683P 0.17 TCGA-BR-8363-01 4 48859372 48859372 A - OCIAD1 Frame_Shift_Del p.E233Kfs*4 0.17 TCGA-BR-8363-01 4 509785 509785 G A PIGG Missense_Mutation p.V309I 0.04 tolerated(0.26) benign(0.123) TCGA-BR-8363-01 4 54424173 54424173 T C LNX1 Intron 0.19 TCGA-BR-8363-01 4 55981455 55981455 A C KDR Missense_Mutation p.L161R 0.14 deleterious(0) probably_damaging(0.999) TCGA-BR-8363-01 4 56336882 56336882 A G CLOCK Splice_Site p.X146_splice 0.14 TCGA-BR-8363-01 4 57522176 57522176 G A HOPX Silent p.R15R 0.19 TCGA-BR-8363-01 4 6596373 6596373 C T MAN2B2 Missense_Mutation p.T324M 0.17 deleterious(0) probably_damaging(0.969) TCGA-BR-8363-01 4 68699069 68699069 A G TMPRSS11D Missense_Mutation p.L182S 0.15 tolerated(0.71) possibly_damaging(0.788) TCGA-BR-8363-01 4 69962562 69962562 T - UGT2B7 Frame_Shift_Del p.S110Hfs*13 0.16 TCGA-BR-8363-01 4 71467311 71467311 A G AMBN Silent p.E157E 0.16 TCGA-BR-8363-01 4 71532173 71532173 G A IGJ Missense_Mutation p.A12V 0.12 tolerated(0.07) benign(0.14) TCGA-BR-8363-01 4 75178863 75178863 T - EPGN Frame_Shift_Del p.Y130Tfs*4 0.09 TCGA-BR-8363-01 4 77292635 77292635 G A CCDC158 Missense_Mutation p.R362W 0.20 deleterious(0) possibly_damaging(0.736) TCGA-BR-8363-01 4 77675979 77675979 C - SHROOM3 Frame_Shift_Del p.P1449Lfs*6 0.14 TCGA-BR-8363-01 4 77692019 77692019 G A SHROOM3 Missense_Mutation p.G1864S 0.17 tolerated(0.86) possibly_damaging(0.585) TCGA-BR-8363-01 4 81124621 81124621 C A PRDM8 Missense_Mutation p.P669T 0.11 deleterious(0) probably_damaging(0.989) TCGA-BR-8363-01 4 8229061 8229061 G A SH3TC1 Missense_Mutation p.R547Q 0.24 deleterious(0.04) probably_damaging(0.998) TCGA-BR-8363-01 4 83996609 83996609 G T COPS4 3'UTR 0.15 TCGA-BR-8363-01 4 87968052 87968052 C A AFF1 Missense_Mutation p.S122Y 0.18 deleterious(0.01) possibly_damaging(0.515) TCGA-BR-8363-01 4 887712 887712 T C GAK Missense_Mutation p.Y276C 0.08 deleterious(0) probably_damaging(0.991) TCGA-BR-8363-01 4 89020553 89020553 C T ABCG2 Missense_Mutation p.G472E 0.18 deleterious(0) possibly_damaging(0.71) TCGA-BR-8363-01 4 946218 946218 A G TMEM175 Missense_Mutation p.I148V 0.19 tolerated(0.36) benign(0.019) TCGA-BR-8363-01 5 1076887 1076887 G A SLC12A7 Missense_Mutation p.A557V 0.15 deleterious(0) probably_damaging(0.967) TCGA-BR-8363-01 5 108523207 108523207 A G FER Silent p.K800K 0.10 TCGA-BR-8363-01 5 112178211 112178211 C T APC Missense_Mutation p.S2307L 0.17 possibly_damaging(0.498) TCGA-BR-8363-01 5 11384949 11384949 G - CTNND2 Frame_Shift_Del p.T336Pfs*14 0.21 TCGA-BR-8363-01 5 118556667 118556667 A G DMXL1 Missense_Mutation p.D2702G 0.15 tolerated(0.36) benign(0.262) TCGA-BR-8363-01 5 127611764 127611764 C - FBN2 Frame_Shift_Del p.Y2521Mfs*90 0.12 TCGA-BR-8363-01 5 1294623 1294623 C T TERT Silent p.T126T 0.13 TCGA-BR-8363-01 5 130939000 130939000 C A RAPGEF6 Missense_Mutation p.R54L 0.12 deleterious(0) benign(0.2) TCGA-BR-8363-01 5 131607542 131607542 C T PDLIM4 Silent p.G243G 0.24 TCGA-BR-8363-01 5 133304225 133304225 C T C5orf15 Silent p.L17L 0.15 TCGA-BR-8363-01 5 13754314 13754314 A G DNAH5 Missense_Mutation p.V3518A 0.10 benign(0.418) TCGA-BR-8363-01 5 138650379 138650379 A G MATR3 Missense_Mutation p.I310V 0.17 tolerated(0.6) possibly_damaging(0.651) TCGA-BR-8363-01 5 139231224 139231224 G A NRG2 Silent p.S579S 0.17 TCGA-BR-8363-01 5 139942072 139942072 G A APBB3 Missense_Mutation p.R122C 0.13 deleterious(0.01) possibly_damaging(0.776) TCGA-BR-8363-01 5 140056256 140056256 C T HARS Missense_Mutation p.V393M 0.13 tolerated(0.78) benign(0.017) TCGA-BR-8363-01 5 140229932 140229932 G A PCDHA9 Missense_Mutation p.A618T 0.18 tolerated_low_confidence(0.09) benign(0.005) TCGA-BR-8363-01 5 140348878 140348878 C A PCDHAC2 Missense_Mutation p.L843M 0.19 tolerated(0.09) probably_damaging(0.972) TCGA-BR-8363-01 5 140553092 140553092 G A PCDHB7 Missense_Mutation p.A226T 0.16 tolerated_low_confidence(0.54) benign(0.01) TCGA-BR-8363-01 5 140581696 140581696 T C PCDHB11 Silent p.S783S 0.19 TCGA-BR-8363-01 5 140605247 140605247 C T PCDHB14 Missense_Mutation p.R724C 0.14 tolerated_low_confidence(0.09) benign(0.416) TCGA-BR-8363-01 5 140616129 140616129 A G PCDHB18 RNA 0.17 TCGA-BR-8363-01 5 140720764 140720764 C T PCDHGA2 Silent p.G742G 0.19 TCGA-BR-8363-01 5 140794641 140794641 G A PCDHGA10 Silent p.A633A 0.14 TCGA-BR-8363-01 5 14507244 14507244 C T TRIO Missense_Mutation p.R2876C 0.36 unknown(0) TCGA-BR-8363-01 5 148619447 148619447 C T ABLIM3 Silent p.R400R 0.11 TCGA-BR-8363-01 5 149681757 149681757 G A ARSI Silent p.H60H 0.19 TCGA-BR-8363-01 5 150276528 150276528 C T ZNF300 Silent p.K107K 0.11 TCGA-BR-8363-01 5 150847389 150847389 T - SLC36A1 Frame_Shift_Del p.F210Sfs*25 0.16 TCGA-BR-8363-01 5 152870393 152870393 A - GRIA1 5'Flank 0.16 TCGA-BR-8363-01 5 156022056 156022056 T - SGCD Frame_Shift_Del p.L167* 0.19 TCGA-BR-8363-01 5 156479604 156479604 G T HAVCR1 Missense_Mutation p.S147R 0.14 tolerated(0.19) unknown(0) TCGA-BR-8363-01 5 156721849 156721849 T G CYFIP2 Intron 0.12 TCGA-BR-8363-01 5 158749469 158749469 G A IL12B Missense_Mutation p.R139C 0.16 tolerated(0.2) benign(0.041) TCGA-BR-8363-01 5 161495078 161495078 G A GABRG2 Missense_Mutation p.V25M 0.05 tolerated_low_confidence(0.05) benign(0.015) TCGA-BR-8363-01 5 176721436 176721436 C T NSD1 Missense_Mutation p.T2356M 0.11 tolerated_low_confidence(0.46) benign(0.005) TCGA-BR-8363-01 5 176721771 176721771 C T NSD1 Missense_Mutation p.R2468W 0.12 deleterious_low_confidence(0) possibly_damaging(0.863) TCGA-BR-8363-01 5 176827207 176827207 G A PFN3 Missense_Mutation p.T124M 0.17 deleterious(0.01) benign(0.05) TCGA-BR-8363-01 5 176868759 176868759 G A GRK6 Silent p.A567A 0.14 TCGA-BR-8363-01 5 179545688 179545688 G A RASGEF1C Missense_Mutation p.T335M 0.16 deleterious(0) possibly_damaging(0.776) TCGA-BR-8363-01 5 179563481 179563481 T C RASGEF1C Missense_Mutation p.Q112R 0.19 tolerated(0.16) benign(0.02) TCGA-BR-8363-01 5 180048230 180048230 C T FLT4 Silent p.T681T 0.10 TCGA-BR-8363-01 5 180661840 180661840 G A TRIM41 3'UTR 0.18 TCGA-BR-8363-01 5 205288 205288 G A CCDC127 3'UTR 0.33 TCGA-BR-8363-01 5 21802471 21802471 T C CDH12 Missense_Mutation p.H354R 0.15 tolerated(0.08) benign(0.074) TCGA-BR-8363-01 5 23521189 23521189 G A PRDM9 Missense_Mutation p.A137T 0.32 tolerated_low_confidence(0.05) benign(0.074) TCGA-BR-8363-01 5 33459936 33459936 C T TARS Missense_Mutation p.A440V 0.39 deleterious(0.01) possibly_damaging(0.817) TCGA-BR-8363-01 5 34867166 34867166 T G TTC23L Missense_Mutation p.L278V 0.19 deleterious(0) probably_damaging(0.956) TCGA-BR-8363-01 5 35857055 35857056 - CT IL7R 5'UTR 0.24 TCGA-BR-8363-01 5 3599882 3599882 G A IRX1 Missense_Mutation p.V274I 0.12 tolerated(0.15) benign(0.012) TCGA-BR-8363-01 5 36143484 36143484 A G LMBRD2 5'UTR 0.38 TCGA-BR-8363-01 5 37294516 37294516 A G NUP155 Missense_Mutation p.V1282A 0.08 tolerated(0.59) benign(0.002) TCGA-BR-8363-01 5 38407028 38407028 C - EGFLAM Frame_Shift_Del p.P311Lfs*8 0.12 TCGA-BR-8363-01 5 38502900 38502900 C T LIFR Missense_Mutation p.R480Q 0.24 tolerated(0.17) benign(0.021) TCGA-BR-8363-01 5 41807470 41807470 C T OXCT1 Missense_Mutation p.R268H 0.08 deleterious(0) possibly_damaging(0.479) TCGA-BR-8363-01 5 43161649 43161649 G T ZNF131 Missense_Mutation p.G224C 0.14 deleterious(0) probably_damaging(0.99) TCGA-BR-8363-01 5 482225 482225 G A SLC9A3 Silent p.S468S 0.13 TCGA-BR-8363-01 5 5239385 5239385 A G ADAMTS16 Missense_Mutation p.N759S 0.10 tolerated(0.12) possibly_damaging(0.531) TCGA-BR-8363-01 5 53814787 53814787 G A SNX18 Silent p.L335L 0.13 TCGA-BR-8363-01 5 64867924 64867925 - A PPWD1 Frame_Shift_Ins p.N262Kfs*7 0.18 TCGA-BR-8363-01 5 65350485 65350485 G A ERBB2IP Silent p.A1113A 0.13 TCGA-BR-8363-01 5 66386023 66386023 C - MAST4 Frame_Shift_Del p.S268Vfs*89 0.13 TCGA-BR-8363-01 5 66461169 66461169 G A MAST4 Silent p.P2054P 0.12 TCGA-BR-8363-01 5 79025878 79025878 T G CMYA5 Silent p.A430A 0.19 TCGA-BR-8363-01 5 79027433 79027433 T C CMYA5 Missense_Mutation p.S949P 0.18 probably_damaging(0.969) TCGA-BR-8363-01 5 79029547 79029547 T C CMYA5 Silent p.G1653G 0.14 TCGA-BR-8363-01 5 79773189 79773189 T - ZFYVE16 Frame_Shift_Del p.*1540S 0.09 TCGA-BR-8363-01 5 83239319 83239319 T C EDIL3 Silent p.R454R 0.16 TCGA-BR-8363-01 5 850499 850499 G A ZDHHC11 Silent p.Y73Y 0.36 TCGA-BR-8363-01 5 9066627 9066627 G T SEMA5A Silent p.A735A 0.11 TCGA-BR-8363-01 5 96232522 96232522 C T ERAP2 Silent p.S486S 0.12 TCGA-BR-8363-01 6 107391602 107391602 C - BEND3 Frame_Shift_Del p.D265Tfs*54 0.36 TCGA-BR-8363-01 6 10882042 10882042 G A GCM2 5'UTR 0.16 TCGA-BR-8363-01 6 10990652 10990652 T C ELOVL2 Missense_Mutation p.S177G 0.08 deleterious(0.01) probably_damaging(0.998) TCGA-BR-8363-01 6 110301082 110301082 C T GPR6 Missense_Mutation p.A256V 0.12 deleterious(0.01) probably_damaging(0.993) TCGA-BR-8363-01 6 111672877 111672877 A G REV3L Splice_Site p.X2434_splice 0.09 TCGA-BR-8363-01 6 116442885 116442885 C T COL10A1 Missense_Mutation p.A132T 0.13 tolerated(0.58) unknown(0) TCGA-BR-8363-01 6 116560165 116560165 T - NT5DC1 Frame_Shift_Del p.F379Lfs*74 0.17 TCGA-BR-8363-01 6 116968721 116968721 G A ZUFSP Missense_Mutation p.R457C 0.19 deleterious(0.04) benign(0.001) TCGA-BR-8363-01 6 129901238 129901238 A - ARHGAP18 Frame_Shift_Del p.L626Cfs*19 0.19 TCGA-BR-8363-01 6 134495987 134495987 C A SGK1 Intron 0.18 TCGA-BR-8363-01 6 136599103 136599103 C T BCLAF1 Missense_Mutation p.A306T 0.09 tolerated(1) benign(0.001) TCGA-BR-8363-01 6 142409697 142409697 C T NMBR Silent p.S33S 0.14 TCGA-BR-8363-01 6 151116993 151116993 G A PLEKHG1 Missense_Mutation p.S195N 0.15 tolerated(0.05) benign(0.161) TCGA-BR-8363-01 6 151939223 151939223 A G CCDC170 Missense_Mutation p.K697E 0.23 tolerated(0.17) benign(0.028) TCGA-BR-8363-01 6 15246694 15246695 - T JARID2 5'UTR 0.13 TCGA-BR-8363-01 6 152655285 152655285 A C SYNE1 Missense_Mutation p.W4218G 0.15 possibly_damaging(0.579) TCGA-BR-8363-01 6 153311082 153311082 T C MTRF1L Missense_Mutation p.K364R 0.09 tolerated(0.55) benign(0.009) TCGA-BR-8363-01 6 15651580 15651580 A - DTNBP1 Frame_Shift_Del p.L42Cfs*8 0.15 TCGA-BR-8363-01 6 158487477 158487477 G A SYNJ2 Silent p.V509V 0.12 TCGA-BR-8363-01 6 158925097 158925097 G T TULP4 Missense_Mutation p.A1468S 0.29 tolerated(0.15) probably_damaging(0.998) TCGA-BR-8363-01 6 159028323 159028323 C T TMEM181 Silent p.G344G 0.14 TCGA-BR-8363-01 6 160831880 160831880 T C SLC22A3 Splice_Site p.X325_splice 0.16 TCGA-BR-8363-01 6 161470750 161470750 C T MAP3K4 Silent p.F482F 0.15 TCGA-BR-8363-01 6 17788022 17788023 - T KIF13A Frame_Shift_Ins p.V1116Sfs*4 0.19 TCGA-BR-8363-01 6 24437410 24437410 T G GPLD1 Missense_Mutation p.S710R 0.13 deleterious(0.05) possibly_damaging(0.802) TCGA-BR-8363-01 6 24445781 24445781 A G GPLD1 Silent p.P671P 0.19 TCGA-BR-8363-01 6 26370798 26370798 G A BTN3A2 Missense_Mutation p.G228S 0.22 tolerated(0.45) benign(0.003) TCGA-BR-8363-01 6 30883933 30883933 T C VARS2 Missense_Mutation p.V223A 0.14 deleterious(0) probably_damaging(0.933) TCGA-BR-8363-01 6 31323362 31323363 - G HLA-B Frame_Shift_Ins p.T211Dfs*10 0.21 TCGA-BR-8363-01 6 31765430 31765430 A - LSM2 3'UTR 0.13 TCGA-BR-8363-01 6 31922410 31922410 G A NELFE Missense_Mutation p.R222W 0.17 deleterious(0.01) unknown(0) TCGA-BR-8363-01 6 32157508 32157508 G A PBX2 Missense_Mutation p.T62I 0.21 deleterious(0.04) possibly_damaging(0.703) TCGA-BR-8363-01 6 32945969 32945970 AG - BRD2 Frame_Shift_Del p.K552Rfs*19 0.16 TCGA-BR-8363-01 6 33245588 33245588 A G B3GALT4 Missense_Mutation p.E131G 0.14 deleterious(0) probably_damaging(1) TCGA-BR-8363-01 6 33409508 33409508 C T SYNGAP1 Nonsense_Mutation p.Q756* 0.17 TCGA-BR-8363-01 6 35392429 35392429 G A PPARD Silent p.L317L 0.15 TCGA-BR-8363-01 6 36651917 36651917 C T CDKN1A Silent p.C13C 0.13 TCGA-BR-8363-01 6 39158873 39158873 G A KCNK5 Silent p.D431D 0.17 TCGA-BR-8363-01 6 41774562 41774562 C T USP49 Missense_Mutation p.A54T 0.15 deleterious(0) possibly_damaging(0.503) TCGA-BR-8363-01 6 43017368 43017368 G A CUL7 Silent p.A618A 0.16 TCGA-BR-8363-01 6 43166564 43166566 CAA - CUL9 In_Frame_Del p.N1008del 0.19 TCGA-BR-8363-01 6 43194124 43194124 G A DNPH1 Missense_Mutation p.A69V 0.22 tolerated(0.1) benign(0.007) TCGA-BR-8363-01 6 43418891 43418891 T A DLK2 Missense_Mutation p.M180L 0.17 tolerated(0.3) possibly_damaging(0.487) TCGA-BR-8363-01 6 44224191 44224191 C T SLC35B2 Missense_Mutation p.G83D 0.19 deleterious(0.01) probably_damaging(0.984) TCGA-BR-8363-01 6 46190828 46190828 A - RCAN2 3'UTR 0.14 TCGA-BR-8363-01 6 46677134 46677134 T - PLA2G7 Frame_Shift_Del p.I267* 0.11 TCGA-BR-8363-01 6 46797161 46797161 C T MEP1A Missense_Mutation p.R333W 0.15 deleterious(0) probably_damaging(0.998) TCGA-BR-8363-01 6 46977322 46977322 T - GPR110 Frame_Shift_Del p.S617Afs*12 0.20 TCGA-BR-8363-01 6 49425419 49425419 A T MUT Missense_Mutation p.F246L 0.16 deleterious_low_confidence(0.02) possibly_damaging(0.588) TCGA-BR-8363-01 6 49928136 49928136 C T DEFB114 Missense_Mutation p.D27N 0.14 tolerated_low_confidence(0.33) benign(0.001) TCGA-BR-8363-01 6 49989664 49989664 A - DEFB110 5'UTR 0.16 TCGA-BR-8363-01 6 51612919 51612919 C T PKHD1 Silent p.V3165V 0.10 TCGA-BR-8363-01 6 52268246 52268246 G A PAQR8 Missense_Mutation p.V79I 0.06 tolerated(0.15) probably_damaging(0.999) TCGA-BR-8363-01 6 52999110 52999110 T - GCM1 Frame_Shift_Del p.T30Pfs*27 0.18 TCGA-BR-8363-01 6 55638912 55638912 C T BMP5 Missense_Mutation p.R321Q 0.12 tolerated(0.45) benign(0.018) TCGA-BR-8363-01 6 56374465 56374465 C - DST Frame_Shift_Del p.T3707Lfs*38 0.10 TCGA-BR-8363-01 6 6007086 6007086 C T NRN1 5'UTR 0.24 TCGA-BR-8363-01 6 62687976 62687976 C T KHDRBS2 Missense_Mutation p.V160I 0.09 tolerated(1) benign(0.444) TCGA-BR-8363-01 6 656447 656447 C T HUS1B Silent p.R166R 0.18 TCGA-BR-8363-01 6 66204602 66204602 A G EYS Silent p.N234N 0.32 TCGA-BR-8363-01 6 71009815 71009815 A G COL9A1 Missense_Mutation p.V77A 0.11 unknown(0) TCGA-BR-8363-01 6 71998699 71998699 C T OGFRL1 Silent p.D20D 0.11 TCGA-BR-8363-01 6 7559542 7559542 G A DSP Missense_Mutation p.G169D 0.12 probably_damaging(0.999) TCGA-BR-8363-01 6 76744488 76744488 T C IMPG1 Silent p.V106V 0.08 TCGA-BR-8363-01 6 83074849 83074849 G A TPBG Silent p.P57P 0.25 TCGA-BR-8363-01 6 83847420 83847420 C T DOPEY1 Missense_Mutation p.S1220F 0.11 deleterious_low_confidence(0.01) benign(0.234) TCGA-BR-8363-01 6 84269853 84269853 G - SNAP91 Frame_Shift_Del p.F868Lfs*31 0.15 TCGA-BR-8363-01 6 90442374 90442374 A G MDN1 Missense_Mutation p.M1615T 0.10 benign(0.004) TCGA-BR-8363-01 6 90575882 90575882 G A CASP8AP2 RNA 0.21 TCGA-BR-8363-01 6 90575909 90575909 A C CASP8AP2 RNA 0.10 TCGA-BR-8363-01 6 90577011 90577011 T C CASP8AP2 RNA 0.21 TCGA-BR-8363-01 6 97247002 97247002 A G GPR63 Silent p.S202S 0.17 TCGA-BR-8363-01 6 99283474 99283474 C T POU3F2 Missense_Mutation p.P242L 0.12 tolerated_low_confidence(0.47) benign(0.006) TCGA-BR-8363-01 6 99797031 99797031 G T FAXC Missense_Mutation p.A73D 0.16 deleterious(0) probably_damaging(0.999) TCGA-BR-8363-01 7 100198185 100198185 C A FBXO24 Missense_Mutation p.A507D 0.11 deleterious_low_confidence(0) benign(0.011) TCGA-BR-8363-01 7 102584993 102584993 A - LRRC17 Frame_Shift_Del p.K424Nfs*12 0.25 TCGA-BR-8363-01 7 103004631 103004631 C T PSMC2 Silent p.G211G 0.14 TCGA-BR-8363-01 7 103290771 103290771 C T RELN Missense_Mutation p.R651H 0.20 deleterious(0) probably_damaging(0.996) TCGA-BR-8363-01 7 107838532 107838532 C T NRCAM Missense_Mutation p.D407N 0.14 tolerated(0.91) possibly_damaging(0.679) TCGA-BR-8363-01 7 112108038 112108039 - T IFRD1 Frame_Shift_Ins p.Y306Lfs*2 0.18 TCGA-BR-8363-01 7 117182086 117182086 A G CFTR Missense_Mutation p.Q378R 0.12 deleterious(0.01) benign(0.023) TCGA-BR-8363-01 7 126086333 126086333 T A GRM8 Missense_Mutation p.I842F 0.15 deleterious(0) benign(0.131) TCGA-BR-8363-01 7 127669905 127669905 G A LRRC4 Silent p.D263D 0.13 TCGA-BR-8363-01 7 127724828 127724828 C - SND1 Frame_Shift_Del p.P723Lfs*2 0.22 TCGA-BR-8363-01 7 134222396 134222396 A - AKR1B10 Frame_Shift_Del p.T244Pfs*6 0.22 TCGA-BR-8363-01 7 134851435 134851435 G T C7orf49 Silent p.A134A 0.18 TCGA-BR-8363-01 7 138601984 138601984 C T KIAA1549 Silent p.T796T 0.18 TCGA-BR-8363-01 7 138758758 138758758 A G ZC3HAV1 Silent p.Y572Y 0.18 TCGA-BR-8363-01 7 140534520 140534520 T C BRAF Silent p.L131L 0.22 TCGA-BR-8363-01 7 142569632 142569632 A C TRPV6 Missense_Mutation p.L669R 0.09 tolerated(0.57) benign(0.001) TCGA-BR-8363-01 7 142583274 142583274 C T TRPV6 5'UTR 0.14 TCGA-BR-8363-01 7 143094660 143094660 C T EPHA1 Missense_Mutation p.R569Q 0.09 tolerated(0.34) benign(0.003) TCGA-BR-8363-01 7 143956655 143956655 G A OR2A7 Nonsense_Mutation p.Q23* 0.07 TCGA-BR-8363-01 7 144063504 144063504 C T ARHGEF5 Missense_Mutation p.R1071W 0.22 deleterious(0) probably_damaging(0.996) TCGA-BR-8363-01 7 146741142 146741142 T C CNTNAP2 Silent p.S182S 0.23 TCGA-BR-8363-01 7 148700825 148700825 G A PDIA4 3'UTR 0.12 TCGA-BR-8363-01 7 148975608 148975608 G A ZNF783 Silent p.G264G 0.10 TCGA-BR-8363-01 7 149171850 149171850 C T ZNF746 Silent p.T521T 0.16 TCGA-BR-8363-01 7 150761764 150761764 G - SLC4A2 Frame_Shift_Del p.E125Rfs*120 0.27 TCGA-BR-8363-01 7 151082222 151082222 T C WDR86 Missense_Mutation p.T272A 0.20 tolerated(0.42) benign(0.001) TCGA-BR-8363-01 7 151791543 151791543 C T GALNT11 Silent p.D77D 0.10 TCGA-BR-8363-01 7 151845524 151845524 A - KMT2C Frame_Shift_Del p.F4496Lfs*21 0.14 TCGA-BR-8363-01 7 151921130 151921132 TCT - KMT2C In_Frame_Del p.E1097del 0.21 TCGA-BR-8363-01 7 152008901 152008901 C A KMT2C Missense_Mutation p.A241S 0.16 probably_damaging(0.997) TCGA-BR-8363-01 7 155499646 155499646 C T RBM33 Missense_Mutation p.R278W 0.09 deleterious(0) probably_damaging(0.995) TCGA-BR-8363-01 7 155534589 155534589 G A RBM33 Missense_Mutation p.R709H 0.17 deleterious(0) unknown(0) TCGA-BR-8363-01 7 156798351 156798351 C T MNX1 Missense_Mutation p.E357K 0.23 deleterious(0.03) benign(0.034) TCGA-BR-8363-01 7 15725539 15725539 G T MEOX2 Missense_Mutation p.S163R 0.18 tolerated(0.32) benign(0.029) TCGA-BR-8363-01 7 158443607 158443607 G A NCAPG2 Missense_Mutation p.H998Y 0.17 tolerated(0.13) benign(0.004) TCGA-BR-8363-01 7 158447310 158447310 C T NCAPG2 Missense_Mutation p.R908Q 0.20 tolerated(0.11) benign(0.002) TCGA-BR-8363-01 7 1589528 1589530 GAT - TMEM184A In_Frame_Del p.I202del 0.19 TCGA-BR-8363-01 7 16817465 16817465 C T TSPAN13 Nonsense_Mutation p.R119* 0.15 TCGA-BR-8363-01 7 20199428 20199428 G A MACC1 Missense_Mutation p.R186C 0.11 deleterious(0) probably_damaging(0.912) TCGA-BR-8363-01 7 20782555 20782555 G A ABCB5 Missense_Mutation p.R1027H 0.22 deleterious(0.01) benign(0.427) TCGA-BR-8363-01 7 23017933 23017933 A G FAM126A Silent p.H96H 0.17 TCGA-BR-8363-01 7 26224439 26224439 A G NFE2L3 Missense_Mutation p.N374S 0.20 deleterious(0.04) benign(0.124) TCGA-BR-8363-01 7 27141760 27141760 T G HOXA2 Silent p.A120A 0.20 TCGA-BR-8363-01 7 27187001 27187001 A G HOXA6 Missense_Mutation p.L123P 0.12 tolerated(0.08) benign(0.133) TCGA-BR-8363-01 7 27880399 27880399 G A JAZF1 Missense_Mutation p.A158V 0.15 tolerated(0.51) benign(0.082) TCGA-BR-8363-01 7 30651771 30651771 T G GARS Missense_Mutation p.F314C 0.13 deleterious(0.01) probably_damaging(0.968) TCGA-BR-8363-01 7 31876897 31876897 G A PDE1C Missense_Mutation p.A427V 0.08 tolerated(0.14) probably_damaging(0.917) TCGA-BR-8363-01 7 33136917 33136917 A G RP9 Missense_Mutation p.I124T 0.13 deleterious(0.02) possibly_damaging(0.702) TCGA-BR-8363-01 7 37780671 37780671 A - GPR141 Frame_Shift_Del p.N227Tfs*5 0.16 TCGA-BR-8363-01 7 38247159 38247159 C T STARD3NL Silent p.S18S 0.15 TCGA-BR-8363-01 7 44806229 44806229 T C ZMIZ2 Silent p.S874S 0.22 TCGA-BR-8363-01 7 45928308 45928308 G T IGFBP1 Missense_Mutation p.Q19H 0.25 tolerated(0.59) unknown(0) TCGA-BR-8363-01 7 4798983 4798983 C - FOXK1 Frame_Shift_Del p.R486Dfs*18 0.17 TCGA-BR-8363-01 7 48318404 48318404 C A ABCA13 Missense_Mutation p.T2538K 0.15 benign(0.014) TCGA-BR-8363-01 7 4855941 4855941 C T RADIL Silent p.V628V 0.15 TCGA-BR-8363-01 7 4917581 4917581 C T RADIL Missense_Mutation p.V64I 0.16 tolerated(0.47) benign(0.073) TCGA-BR-8363-01 7 50531075 50531075 T - DDC Frame_Shift_Del p.I433Sfs*98 0.21 TCGA-BR-8363-01 7 51096673 51096673 G A COBL Missense_Mutation p.T707M 0.18 deleterious(0) probably_damaging(0.999) TCGA-BR-8363-01 7 53103605 53103605 C T POM121L12 Missense_Mutation p.R81W 0.12 deleterious(0.02) probably_damaging(0.942) TCGA-BR-8363-01 7 5966162 5966162 A G RSPH10B Missense_Mutation p.L817S 0.22 tolerated(0.08) probably_damaging(0.94) TCGA-BR-8363-01 7 62753101 62753101 C A ZNF733P RNA 0.15 TCGA-BR-8363-01 7 63726625 63726625 T C ZNF679 Missense_Mutation p.I205T 0.19 deleterious(0.05) possibly_damaging(0.739) TCGA-BR-8363-01 7 6791127 6791127 A - RSPH10B2 5'Flank 0.33 TCGA-BR-8363-01 7 6840602 6840602 T - CCZ1B Frame_Shift_Del p.N457Mfs*4 0.14 TCGA-BR-8363-01 7 73961459 73961459 G A GTF2IRD1 Missense_Mutation p.V619I 0.18 tolerated(0.05) probably_damaging(0.992) TCGA-BR-8363-01 7 76633587 76633587 G A UPK3B Intron 0.13 TCGA-BR-8363-01 7 76922503 76922503 G A CCDC146 Missense_Mutation p.A884T 0.16 tolerated(0.38) benign(0.021) TCGA-BR-8363-01 7 77824201 77824201 A C MAGI2 Nonsense_Mutation p.Y753* 0.21 TCGA-BR-8363-01 7 801405 801405 C T HEATR2 Missense_Mutation p.R496C 0.13 tolerated(0.07) possibly_damaging(0.586) TCGA-BR-8363-01 7 83689835 83689835 C T SEMA3A Missense_Mutation p.G165S 0.14 deleterious(0) probably_damaging(0.993) TCGA-BR-8363-01 7 92762979 92762979 T - SAMD9L Frame_Shift_Del p.N769Tfs*13 0.16 TCGA-BR-8363-01 7 92763654 92763654 A - SAMD9L Frame_Shift_Del p.L544Wfs*2 0.17 TCGA-BR-8363-01 7 94041396 94041396 C T COL1A2 Missense_Mutation p.P456L 0.09 probably_damaging(0.988) TCGA-BR-8363-01 7 98497363 98497363 T C TRRAP Missense_Mutation p.I258T 0.20 benign(0.152) TCGA-BR-8363-01 7 98547362 98547362 G T TRRAP Missense_Mutation p.W1671L 0.17 probably_damaging(0.941) TCGA-BR-8363-01 7 99754169 99754169 C A C7orf43 Silent p.L360L 0.12 TCGA-BR-8363-01 7 99971837 99971837 C T PILRA Nonsense_Mutation p.Q79* 0.16 TCGA-BR-8363-01 8 100791069 100791069 A G VPS13B Missense_Mutation p.K2555R 0.18 tolerated(0.34) benign(0) TCGA-BR-8363-01 8 103662532 103662532 G A KLF10 Missense_Mutation p.T424M 0.17 deleterious(0) probably_damaging(1) TCGA-BR-8363-01 8 104427576 104427576 A C DCAF13 Missense_Mutation p.S120R 0.13 deleterious_low_confidence(0) possibly_damaging(0.883) TCGA-BR-8363-01 8 10464345 10464345 A G RP1L1 3'UTR 0.12 TCGA-BR-8363-01 8 10623283 10623283 C T PINX1 Silent p.T205T 0.15 TCGA-BR-8363-01 8 10755762 10755762 C T XKR6 Silent p.T542T 0.21 TCGA-BR-8363-01 8 110456122 110456122 G T PKHD1L1 Missense_Mutation p.W1594C 0.17 tolerated(1) benign(0) TCGA-BR-8363-01 8 11616052 11616052 C A GATA4 3'UTR 0.23 TCGA-BR-8363-01 8 11710150 11710150 T C CTSB Missense_Mutation p.T61A 0.10 tolerated(0.36) benign(0.004) TCGA-BR-8363-01 8 120816158 120816159 CT - TAF2 Frame_Shift_Del p.G174Cfs*20 0.17 TCGA-BR-8363-01 8 133673853 133673853 G A LRRC6 Missense_Mutation p.R11W 0.13 deleterious(0) probably_damaging(0.952) TCGA-BR-8363-01 8 136561083 136561083 T C KHDRBS3 Silent p.P137P 0.19 TCGA-BR-8363-01 8 139606405 139606405 C T COL22A1 Silent p.A1490A 0.11 TCGA-BR-8363-01 8 142190927 142190927 C T DENND3 Missense_Mutation p.A893V 0.14 tolerated(0.06) benign(0.406) TCGA-BR-8363-01 8 144241620 144241620 G - LY6H 5'UTR 0.30 TCGA-BR-8363-01 8 144378753 144378753 G A ZNF696 Missense_Mutation p.S303N 0.21 tolerated(0.14) benign(0.165) TCGA-BR-8363-01 8 144458725 144458725 G T RHPN1 Silent p.T69T 0.16 TCGA-BR-8363-01 8 144991783 144991783 C T PLEC Missense_Mutation p.R4206H 0.15 probably_damaging(0.999) TCGA-BR-8363-01 8 144991811 144991811 G A PLEC Missense_Mutation p.R4197W 0.14 probably_damaging(1) TCGA-BR-8363-01 8 145095791 145095791 T C SPATC1 Silent p.H363H 0.18 TCGA-BR-8363-01 8 145108142 145108142 G A OPLAH Silent p.D947D 0.20 TCGA-BR-8363-01 8 145135325 145135325 C A EXOSC4 Missense_Mutation p.L187M 0.12 deleterious(0.04) possibly_damaging(0.631) TCGA-BR-8363-01 8 145583737 145583739 CTT - SLC52A2 In_Frame_Del p.F197del 0.17 TCGA-BR-8363-01 8 145641416 145641416 C T SLC39A4 Silent p.P84P 0.19 TCGA-BR-8363-01 8 145730035 145730035 G A GPT Missense_Mutation p.A71T 0.13 tolerated(0.06) probably_damaging(0.965) TCGA-BR-8363-01 8 145998752 145998752 C - ZNF34 Frame_Shift_Del p.E528Rfs*70 0.11 TCGA-BR-8363-01 8 146033645 146033645 C T ZNF517 Silent p.G448G 0.32 TCGA-BR-8363-01 8 16035397 16035397 G A MSR1 Missense_Mutation p.P34L 0.19 tolerated(0.67) benign(0.005) TCGA-BR-8363-01 8 17409402 17409402 A - SLC7A2 Frame_Shift_Del p.S363Afs*5 0.20 TCGA-BR-8363-01 8 19252128 19252128 C A SH2D4A Missense_Mutation p.P447H 0.14 deleterious(0) probably_damaging(0.966) TCGA-BR-8363-01 8 195439 195439 C T ZNF596 Missense_Mutation p.R198C 0.12 deleterious(0) benign(0.006) TCGA-BR-8363-01 8 195650 195650 G A ZNF596 Missense_Mutation p.R268Q 0.14 tolerated(0.63) benign(0.034) TCGA-BR-8363-01 8 22865085 22865085 C T RHOBTB2 Missense_Mutation p.R465C 0.17 tolerated(0.13) possibly_damaging(0.86) TCGA-BR-8363-01 8 23159645 23159645 G A LOXL2 Silent p.F676F 0.16 TCGA-BR-8363-01 8 23307461 23307461 A G ENTPD4 5'UTR 0.15 TCGA-BR-8363-01 8 24813072 24813072 C T CTD-2168K21.2 5'Flank 0.21 TCGA-BR-8363-01 8 26238015 26238015 G A BNIP3L 5'Flank 0.13 TCGA-BR-8363-01 8 27320707 27320707 T A CHRNA2 Missense_Mutation p.E418V 0.15 tolerated(0.18) benign(0.032) TCGA-BR-8363-01 8 27657064 27657064 C T ESCO2 Missense_Mutation p.R502C 0.18 deleterious(0) probably_damaging(1) TCGA-BR-8363-01 8 3253876 3253876 G T CSMD1 Silent p.T811T 0.14 TCGA-BR-8363-01 8 32600278 32600278 C G NRG1 Intron 0.12 TCGA-BR-8363-01 8 35583730 35583730 G A UNC5D Missense_Mutation p.S455N 0.16 tolerated(0.09) possibly_damaging(0.787) TCGA-BR-8363-01 8 41504832 41504832 C T NKX6-3 Missense_Mutation p.G15R 0.12 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-BR-8363-01 8 41791029 41791029 T A KAT6A Missense_Mutation p.D1570V 0.16 unknown(0) TCGA-BR-8363-01 8 51617256 51617256 G A SNTG1 Missense_Mutation p.A379T 0.14 tolerated(0.22) benign(0.032) TCGA-BR-8363-01 8 52321999 52321999 C T PXDNL Missense_Mutation p.A729T 0.12 tolerated(1) benign(0.002) TCGA-BR-8363-01 8 54147653 54147653 T G OPRK1 Silent p.T92T 0.09 TCGA-BR-8363-01 8 54900718 54900718 C T TCEA1 Missense_Mutation p.R141Q 0.21 deleterious(0.02) benign(0.331) TCGA-BR-8363-01 8 62371044 62371044 A G CLVS1 Missense_Mutation p.H307R 0.17 tolerated_low_confidence(0.1) benign(0.093) TCGA-BR-8363-01 8 623865 623865 T - ERICH1 Frame_Shift_Del p.R163Gfs*3 0.22 TCGA-BR-8363-01 8 623991 623991 T C ERICH1 Missense_Mutation p.K121E 0.20 deleterious(0) possibly_damaging(0.763) TCGA-BR-8363-01 8 65494426 65494426 C T BHLHE22 Missense_Mutation p.P360L 0.11 deleterious_low_confidence(0) possibly_damaging(0.842) TCGA-BR-8363-01 8 65509147 65509147 T C CYP7B1 3'UTR 0.30 TCGA-BR-8363-01 8 68140340 68140340 A G ARFGEF1 Missense_Mutation p.V1150A 0.19 deleterious(0) probably_damaging(0.998) TCGA-BR-8363-01 8 71593234 71593234 T - XKR9 5'UTR 0.18 TCGA-BR-8363-01 8 73479929 73479929 T - KCNB2 5'UTR 0.14 TCGA-BR-8363-01 8 73480260 73480260 T C KCNB2 Silent p.T97T 0.10 TCGA-BR-8363-01 8 73982108 73982109 CA - SBSPON Frame_Shift_Del p.V203Gfs*34 0.13 TCGA-BR-8363-01 8 75227676 75227676 C - JPH1 Frame_Shift_Del p.A187Pfs*17 0.10 TCGA-BR-8363-01 8 81399872 81399872 A - ZBTB10 Frame_Shift_Del p.K277Rfs*32 0.14 TCGA-BR-8363-01 8 8235193 8235193 G A SGK223 Silent p.C242C 0.17 TCGA-BR-8363-01 8 86019623 86019623 A C LRRCC1 Missense_Mutation p.K31N 0.17 deleterious(0.04) benign(0.036) TCGA-BR-8363-01 8 89053676 89053676 A - MMP16 3'UTR 0.12 TCGA-BR-8363-01 8 89053686 89053686 A G MMP16 3'UTR 0.19 TCGA-BR-8363-01 8 95658510 95658510 T C ESRP1 Missense_Mutation p.Y164H 0.12 tolerated(0.37) benign(0.001) TCGA-BR-8363-01 9 101980272 101980272 A - ALG2 Frame_Shift_Del p.S399Pfs*45 0.13 TCGA-BR-8363-01 9 102590786 102590786 G A NR4A3 Silent p.A165A 0.20 TCGA-BR-8363-01 9 106885501 106885501 A - SMC2 Frame_Shift_Del p.T751Pfs*9 0.17 TCGA-BR-8363-01 9 107548643 107548643 T C ABCA1 Missense_Mutation p.R2113G 0.16 deleterious(0) probably_damaging(1) TCGA-BR-8363-01 9 108118459 108118459 T - SLC44A1 Intron 0.10 TCGA-BR-8363-01 9 108397398 108397398 T C FKTN Silent p.C413C 0.15 TCGA-BR-8363-01 9 111625915 111625915 C T ACTL7A 3'UTR 0.19 TCGA-BR-8363-01 9 112918719 112918719 T G PALM2-AKAP2 Missense_Mutation p.L1039R 0.13 deleterious(0) probably_damaging(1) TCGA-BR-8363-01 9 117379467 117379467 C T C9orf91 5'UTR 0.20 TCGA-BR-8363-01 9 117848521 117848521 G A TNC Missense_Mutation p.R497W 0.13 deleterious(0.02) probably_damaging(0.973) TCGA-BR-8363-01 9 123234112 123234112 C T CDK5RAP2 Missense_Mutation p.R591Q 0.16 deleterious(0.02) possibly_damaging(0.885) TCGA-BR-8363-01 9 123620198 123620198 A G PHF19 3'UTR 0.11 TCGA-BR-8363-01 9 123924525 123924525 A - CNTRL Frame_Shift_Del p.K1802Sfs*9 0.17 TCGA-BR-8363-01 9 125154645 125154645 C T PTGS1 Missense_Mutation p.P541L 0.12 deleterious(0) probably_damaging(1) TCGA-BR-8363-01 9 125391778 125391778 C A OR1B1 Missense_Mutation p.V13F 0.10 deleterious(0) benign(0.08) TCGA-BR-8363-01 9 127316774 127316774 C A NR6A1 Missense_Mutation p.G73V 0.15 deleterious(0) probably_damaging(0.996) TCGA-BR-8363-01 9 129377676 129377676 C T LMX1B Missense_Mutation p.H52Y 0.19 tolerated(0.46) benign(0.231) TCGA-BR-8363-01 9 129377811 129377811 C T LMX1B Missense_Mutation p.R97W 0.17 deleterious(0) probably_damaging(0.975) TCGA-BR-8363-01 9 129851253 129851253 T C ANGPTL2 Missense_Mutation p.M483V 0.13 deleterious(0.02) probably_damaging(0.977) TCGA-BR-8363-01 9 131020362 131020362 G A GOLGA2 Missense_Mutation p.A775V 0.19 tolerated(0.57) benign(0.029) TCGA-BR-8363-01 9 131477648 131477648 G A PKN3 Missense_Mutation p.V573I 0.21 deleterious(0) possibly_damaging(0.617) TCGA-BR-8363-01 9 131708405 131708405 G A DOLK Missense_Mutation p.S393F 0.16 deleterious(0.01) possibly_damaging(0.653) TCGA-BR-8363-01 9 131857690 131857690 G - CRAT Frame_Shift_Del p.R623Gfs*47 0.17 TCGA-BR-8363-01 9 131939119 131939119 A T IER5L Nonstop_Mutation p.*405Kext*52 0.22 TCGA-BR-8363-01 9 132484621 132484621 C T PRRX2 Missense_Mutation p.T251M 0.23 deleterious_low_confidence(0) possibly_damaging(0.893) TCGA-BR-8363-01 9 133769184 133769184 C T QRFP Silent p.P14P 0.14 TCGA-BR-8363-01 9 134386850 134386850 A G POMT1 Missense_Mutation p.M350V 0.14 tolerated(0.85) benign(0.002) TCGA-BR-8363-01 9 136268936 136268936 G T C9orf96 Missense_Mutation p.W529C 0.20 deleterious(0) probably_damaging(0.995) TCGA-BR-8363-01 9 136321236 136321236 T C ADAMTS13 Missense_Mutation p.M1205T 0.19 tolerated(0.06) benign(0.024) TCGA-BR-8363-01 9 137676834 137676834 G - COL5A1 Splice_Site p.X830_splice 0.13 TCGA-BR-8363-01 9 138657549 138657549 A G KCNT1 Missense_Mutation p.Q427R 0.16 deleterious(0.01) benign(0.03) TCGA-BR-8363-01 9 139354227 139354227 T C SEC16A Missense_Mutation p.T1725A 0.10 deleterious(0.04) possibly_damaging(0.646) TCGA-BR-8363-01 9 139361486 139361486 G T SEC16A Silent p.P1284P 0.15 TCGA-BR-8363-01 9 140108803 140108803 C T NDOR1 Silent p.T220T 0.17 TCGA-BR-8363-01 9 140115423 140115424 - C RNF208 Frame_Shift_Ins p.D81Gfs*20 0.29 TCGA-BR-8363-01 9 140196000 140196000 C T NRARP 3'UTR 0.22 TCGA-BR-8363-01 9 140379084 140379084 G T PNPLA7 Missense_Mutation p.L768I 0.19 tolerated(0.12) probably_damaging(0.919) TCGA-BR-8363-01 9 140732961 140732961 C - EHMT1 3'Flank 0.23 TCGA-BR-8363-01 9 19063702 19063702 G T HAUS6 Intron 0.15 TCGA-BR-8363-01 9 20414370 20414370 G A MLLT3 Silent p.S158S 0.07 TCGA-BR-8363-01 9 27950348 27950348 G A LINGO2 Missense_Mutation p.R108C 0.14 deleterious(0) probably_damaging(0.957) TCGA-BR-8363-01 9 33466680 33466680 C T NOL6 Missense_Mutation p.V660I 0.07 tolerated(0.11) benign(0.115) TCGA-BR-8363-01 9 33927924 33927924 C T UBAP2 Missense_Mutation p.V748I 0.06 tolerated(0.12) unknown(0) TCGA-BR-8363-01 9 35066769 35066769 C T VCP Silent p.V116V 0.16 TCGA-BR-8363-01 9 35810631 35810631 T C SPAG8 Intron 0.12 TCGA-BR-8363-01 9 35811581 35811581 G A SPAG8 Silent p.G154G 0.20 TCGA-BR-8363-01 9 36122901 36122901 T C RECK Silent p.P925P 0.16 TCGA-BR-8363-01 9 6007371 6007371 C T KIAA2026 Silent p.L139L 0.13 TCGA-BR-8363-01 9 6014724 6014724 G T RANBP6 Missense_Mutation p.S295Y 0.15 deleterious(0) probably_damaging(0.947) TCGA-BR-8363-01 9 67968525 67968525 T C ANKRD20A1 Missense_Mutation p.V695A 0.09 tolerated(0.24) benign(0) TCGA-BR-8363-01 9 70993145 70993145 A G PGM5 Missense_Mutation p.I98V 0.06 deleterious(0.01) possibly_damaging(0.573) TCGA-BR-8363-01 9 72933542 72933542 C T SMC5 Missense_Mutation p.A640V 0.13 deleterious(0.05) possibly_damaging(0.846) TCGA-BR-8363-01 9 74526555 74526555 A T C9orf85 5'UTR 0.15 TCGA-BR-8363-01 9 75545894 75545894 A - ALDH1A1 Frame_Shift_Del p.Q72Rfs*24 0.20 TCGA-BR-8363-01 9 77614759 77614759 T C C9orf41 Silent p.V206V 0.21 TCGA-BR-8363-01 9 79635218 79635218 G A FOXB2 Silent p.K216K 0.18 TCGA-BR-8363-01 9 82322068 82322068 C T TLE4 Intron 0.15 TCGA-BR-8363-01 9 86616917 86616917 T G RMI1 Missense_Mutation p.L339W 0.14 deleterious(0) possibly_damaging(0.789) TCGA-BR-8363-01 9 89560907 89560907 T C GAS1 Missense_Mutation p.D263G 0.16 tolerated(0.1) possibly_damaging(0.811) TCGA-BR-8363-01 9 91150404 91150404 G T NXNL2 Nonsense_Mutation p.E19* 0.23 TCGA-BR-8363-01 9 95236979 95236979 A - ASPN Frame_Shift_Del p.P68Hfs*24 0.13 TCGA-BR-8363-01 9 95420958 95420958 G A IPPK Silent p.C29C 0.17 TCGA-BR-8363-01 9 95992120 95992120 C T WNK2 Missense_Mutation p.T275M 0.12 unknown(0) TCGA-BR-8363-01 9 97082005 97082005 C T NUTM2F Missense_Mutation p.A459T 0.15 deleterious(0.01) benign(0.39) TCGA-BR-8363-01 9 98268793 98268793 T - PTCH1 Frame_Shift_Del p.N97Tfs*20 0.15 TCGA-BR-8363-01 9 98683572 98683572 A - ERCC6L2 Frame_Shift_Del p.R438Gfs*15 0.15 TCGA-BR-8363-01 9 99700174 99700174 C T NUTM2G Missense_Mutation p.A444V 0.10 deleterious(0.02) benign(0.329) TCGA-BR-8363-01 X 100265551 100265551 C T TRMT2B 3'UTR 0.13 TCGA-BR-8363-01 X 100530216 100530217 - T TAF7L Frame_Shift_Ins p.N446Kfs*2 0.13 TCGA-BR-8363-01 X 100809163 100809163 T - ARMCX1 Frame_Shift_Del p.F419Sfs*16 0.17 TCGA-BR-8363-01 X 101818313 101818313 A C NXF4 RNA 0.19 TCGA-BR-8363-01 X 102004814 102004814 T G BHLHB9 Silent p.R297R 0.14 TCGA-BR-8363-01 X 103041611 103041611 C T PLP1 Missense_Mutation p.R137W 0.15 deleterious_low_confidence(0.02) possibly_damaging(0.465) TCGA-BR-8363-01 X 103267881 103267881 C T H2BFWT Missense_Mutation p.A118T 0.14 deleterious(0.02) benign(0.116) TCGA-BR-8363-01 X 10427835 10427835 G A MID1 Missense_Mutation p.S433L 0.12 deleterious(0.01) probably_damaging(0.933) TCGA-BR-8363-01 X 105152838 105152838 A C NRK Missense_Mutation p.Q403P 0.13 deleterious(0.01) possibly_damaging(0.649) TCGA-BR-8363-01 X 106841349 106841349 A C FRMPD3 Missense_Mutation p.H780P 0.10 tolerated(0.09) probably_damaging(0.986) TCGA-BR-8363-01 X 107834822 107834822 C - COL4A5 Frame_Shift_Del p.P459Qfs*15 0.14 TCGA-BR-8363-01 X 108636252 108636252 A G GUCY2F Silent p.N819N 0.15 TCGA-BR-8363-01 X 109441848 109441848 T C AMMECR1 Missense_Mutation p.K301R 0.20 deleterious(0) probably_damaging(0.969) TCGA-BR-8363-01 X 120181650 120181650 G A GLUD2 Missense_Mutation p.A38T 0.10 tolerated_low_confidence(0.16) benign(0.003) TCGA-BR-8363-01 X 12809648 12809648 C T PRPS2 Missense_Mutation p.S11L 0.11 deleterious(0.02) benign(0.15) TCGA-BR-8363-01 X 129201411 129201411 G A ELF4 Missense_Mutation p.T426M 0.14 deleterious(0) probably_damaging(0.998) TCGA-BR-8363-01 X 129338851 129338851 G A ZNF280C 3'UTR 0.17 TCGA-BR-8363-01 X 12938574 12938574 G A TLR8 Missense_Mutation p.R472H 0.15 tolerated(0.77) benign(0.001) TCGA-BR-8363-01 X 133378875 133378875 T - CCDC160 Frame_Shift_Del p.F17Lfs*7 0.22 TCGA-BR-8363-01 X 134025602 134025602 G T MOSPD1 Missense_Mutation p.L173M 0.13 deleterious(0) probably_damaging(0.999) TCGA-BR-8363-01 X 134709114 134709114 T C DDX26B Missense_Mutation p.L579P 0.14 deleterious(0.01) probably_damaging(0.986) TCGA-BR-8363-01 X 135314371 135314371 C T MAP7D3 Missense_Mutation p.V249I 0.10 tolerated(0.73) benign(0.014) TCGA-BR-8363-01 X 135405372 135405372 G A GPR112 Missense_Mutation p.S169N 0.17 tolerated(0.2) benign(0.412) TCGA-BR-8363-01 X 135428617 135428617 A C GPR112 Missense_Mutation p.T918P 0.19 deleterious(0) possibly_damaging(0.796) TCGA-BR-8363-01 X 135431470 135431470 A G GPR112 Missense_Mutation p.R1869G 0.19 tolerated(0.11) benign(0.004) TCGA-BR-8363-01 X 136112734 136112734 A G GPR101 Missense_Mutation p.V367A 0.18 tolerated(0.07) benign(0.016) TCGA-BR-8363-01 X 136649262 136649262 G A ZIC3 Missense_Mutation p.G138R 0.19 deleterious(0) probably_damaging(0.997) TCGA-BR-8363-01 X 14038456 14038456 C T GEMIN8 Silent p.A71A 0.12 TCGA-BR-8363-01 X 140995432 140995432 T A MAGEC1 Missense_Mutation p.S748T 0.15 tolerated_low_confidence(0.39) benign(0.153) TCGA-BR-8363-01 X 142718929 142718929 T G SLITRK4 5'UTR 0.13 TCGA-BR-8363-01 X 147743680 147743680 G A AFF2 Silent p.L144L 0.13 TCGA-BR-8363-01 X 149809853 149809853 C T MTM1 Missense_Mutation p.R214W 0.14 deleterious(0) probably_damaging(0.967) TCGA-BR-8363-01 X 150156290 150156290 C T HMGB3 Missense_Mutation p.A169V 0.20 tolerated(0.08) benign(0.049) TCGA-BR-8363-01 X 150348782 150348782 T G GPR50 Missense_Mutation p.F243V 0.13 tolerated(0.09) benign(0.221) TCGA-BR-8363-01 X 150911720 150911720 C T CNGA2 Missense_Mutation p.R249C 0.16 deleterious(0) probably_damaging(1) TCGA-BR-8363-01 X 151899916 151899916 T C MAGEA12 Silent p.G295G 0.14 TCGA-BR-8363-01 X 152158876 152158876 C T PNMA5 Missense_Mutation p.G423R 0.16 tolerated(0.57) benign(0.001) TCGA-BR-8363-01 X 152225666 152225667 - G PNMA3 Frame_Shift_Ins p.P88Afs*10 0.15 TCGA-BR-8363-01 X 152721222 152721222 G A HAUS7 Silent p.Y246Y 0.12 TCGA-BR-8363-01 X 152822455 152822455 A G ATP2B3 Missense_Mutation p.K803E 0.19 deleterious(0) probably_damaging(0.911) TCGA-BR-8363-01 X 153132296 153132296 G - L1CAM Frame_Shift_Del p.Q747Rfs*104 0.12 TCGA-BR-8363-01 X 153171758 153171758 G T AVPR2 Silent p.V266V 0.10 TCGA-BR-8363-01 X 155127786 155127786 G A VAMP7 Missense_Mutation p.R72H 0.09 deleterious(0.03) probably_damaging(0.92) TCGA-BR-8363-01 X 15841310 15841310 G A ZRSR2 Missense_Mutation p.G465D 0.14 tolerated_low_confidence(0.07) unknown(0) TCGA-BR-8363-01 X 16672634 16672634 G T S100G 3'UTR 0.13 TCGA-BR-8363-01 X 16754325 16754325 T - SYAP1 Frame_Shift_Del p.F111Lfs*71 0.14 TCGA-BR-8363-01 X 19045371 19045371 T C GPR64 Missense_Mutation p.T146A 0.14 tolerated_low_confidence(0.08) benign(0.41) TCGA-BR-8363-01 X 21675009 21675009 C T KLHL34 Missense_Mutation p.A300T 0.11 tolerated(0.15) benign(0.024) TCGA-BR-8363-01 X 22051188 22051188 C T PHEX Missense_Mutation p.A22V 0.13 deleterious(0.04) probably_damaging(0.985) TCGA-BR-8363-01 X 23411550 23411550 G A PTCHD1 Missense_Mutation p.E639K 0.15 tolerated(0.24) benign(0.371) TCGA-BR-8363-01 X 23721968 23721968 G A ACOT9 3'UTR 0.12 TCGA-BR-8363-01 X 23722911 23722911 C T ACOT9 Silent p.V386V 0.06 TCGA-BR-8363-01 X 2659001 2659001 C T CD99 3'UTR 0.20 TCGA-BR-8363-01 X 3229371 3229371 C T MXRA5 Silent p.S2291S 0.19 TCGA-BR-8363-01 X 3235196 3235196 G T MXRA5 Missense_Mutation p.P2176T 0.19 deleterious(0.01) possibly_damaging(0.764) TCGA-BR-8363-01 X 3235707 3235707 G A MXRA5 Silent p.H2005H 0.09 TCGA-BR-8363-01 X 32490402 32490402 C T DMD Missense_Mutation p.R943H 0.09 probably_damaging(0.993) TCGA-BR-8363-01 X 34149740 34149740 G A FAM47A Missense_Mutation p.P219L 0.08 tolerated(0.7) benign(0.002) TCGA-BR-8363-01 X 37027561 37027561 G T FAM47C Nonsense_Mutation p.E360* 0.15 TCGA-BR-8363-01 X 37028339 37028339 G A FAM47C Missense_Mutation p.R619H 0.14 tolerated(0.74) benign(0.001) TCGA-BR-8363-01 X 37545386 37545386 G A XK Missense_Mutation p.V58I 0.17 tolerated(1) benign(0.037) TCGA-BR-8363-01 X 40465111 40465111 A - ATP6AP2 3'UTR 0.33 TCGA-BR-8363-01 X 41413004 41413004 T C CASK Silent p.A669A 0.13 TCGA-BR-8363-01 X 43603382 43603382 C T MAOA Silent p.T467T 0.24 TCGA-BR-8363-01 X 47424262 47424262 G A ARAF Silent p.E89E 0.21 TCGA-BR-8363-01 X 47464744 47464744 G A SYN1 Missense_Mutation p.H188Y 0.18 deleterious(0.02) possibly_damaging(0.522) TCGA-BR-8363-01 X 48458953 48458953 A G WDR13 Missense_Mutation p.D257G 0.16 deleterious(0.01) possibly_damaging(0.858) TCGA-BR-8363-01 X 48751254 48751254 C - TIMM17B Frame_Shift_Del p.G170Afs*81 0.15 TCGA-BR-8363-01 X 48858647 48858647 C - GRIPAP1 5'UTR 0.20 TCGA-BR-8363-01 X 48923103 48923103 A G CCDC120 Silent p.P267P 0.21 TCGA-BR-8363-01 X 48925339 48925339 G A CCDC120 Silent p.V528V 0.11 TCGA-BR-8363-01 X 49126663 49126663 G - PPP1R3F Frame_Shift_Del p.Y114Tfs*58 0.13 TCGA-BR-8363-01 X 49127199 49127199 C T PPP1R3F Silent p.P289P 0.16 TCGA-BR-8363-01 X 50125581 50125581 A G DGKK RNA 0.19 TCGA-BR-8363-01 X 51487354 51487354 A C GSPT2 Missense_Mutation p.H211P 0.33 deleterious(0) probably_damaging(0.942) TCGA-BR-8363-01 X 51637865 51637865 C T MAGED1 Missense_Mutation p.T63M 0.15 deleterious_low_confidence(0.02) unknown(0) TCGA-BR-8363-01 X 52896166 52896166 T G XAGE3 5'UTR 0.14 TCGA-BR-8363-01 X 53112184 53112184 G A TSPYL2 Silent p.A168A 0.16 TCGA-BR-8363-01 X 53222406 53222406 C T KDM5C Missense_Mutation p.E1476K 0.12 tolerated(0.26) possibly_damaging(0.448) TCGA-BR-8363-01 X 53284024 53284024 C T IQSEC2 Missense_Mutation p.M363I 0.19 deleterious(0) probably_damaging(0.995) TCGA-BR-8363-01 X 54209086 54209086 C T FAM120C Silent p.E182E 0.10 TCGA-BR-8363-01 X 54209092 54209092 C T FAM120C Silent p.L180L 0.10 TCGA-BR-8363-01 X 55513677 55513677 C T USP51 Missense_Mutation p.A566T 0.15 deleterious(0.01) benign(0.297) TCGA-BR-8363-01 X 63555964 63555964 G T MTMR8 Silent p.S382S 0.15 TCGA-BR-8363-01 X 66766584 66766584 C T AR Silent p.S532S 0.17 TCGA-BR-8363-01 X 67412807 67412807 A C OPHN1 Silent p.T410T 0.12 TCGA-BR-8363-01 X 69503872 69503872 A G RAB41 Silent p.K175K 0.08 TCGA-BR-8363-01 X 69669629 69669629 C A DLG3 Missense_Mutation p.P208H 0.27 tolerated(0.09) possibly_damaging(0.738) TCGA-BR-8363-01 X 69719839 69719839 C A DLG3 Silent p.G695G 0.16 TCGA-BR-8363-01 X 70517705 70517705 C T NONO Missense_Mutation p.R350C 0.09 deleterious(0.05) possibly_damaging(0.761) TCGA-BR-8363-01 X 70836598 70836598 G A CXCR3 Silent p.L289L 0.18 TCGA-BR-8363-01 X 74494453 74494453 C A UPRT Missense_Mutation p.L122I 0.13 deleterious(0) probably_damaging(0.992) TCGA-BR-8363-01 X 75004644 75004644 C T MAGEE2 Silent p.A81A 0.13 TCGA-BR-8363-01 X 75649353 75649353 G A MAGEE1 Missense_Mutation p.V344M 0.08 tolerated_low_confidence(0.21) benign(0.002) TCGA-BR-8363-01 X 76225846 76225846 G T MIR325 RNA 0.21 TCGA-BR-8363-01 X 76920196 76920196 T C ATRX Missense_Mutation p.D1294G 0.12 possibly_damaging(0.45) TCGA-BR-8363-01 X 77224362 77224362 C T PGAM4 3'UTR 0.22 TCGA-BR-8363-01 X 7870101 7870101 G A PNPLA4 Nonsense_Mutation p.R187* 0.10 TCGA-BR-8363-01 X 83724232 83724232 G T HDX Missense_Mutation p.L167I 0.17 tolerated(0.22) benign(0.016) TCGA-BR-8363-01 X 84310876 84310876 G A APOOL Silent p.P113P 0.16 TCGA-BR-8363-01 X 84362677 84362677 G - SATL1 Frame_Shift_Del p.P433Hfs*14 0.18 TCGA-BR-8363-01 X 90690622 90690622 C T PABPC5 Missense_Mutation p.L16F 0.20 deleterious(0.01) benign(0.262) TCGA-BR-8363-01 X 9660159 9660159 A G TBL1X Silent p.G252G 0.19 TCGA-BR-8363-01 X 99891682 99891682 G T TSPAN6 Missense_Mutation p.P4T 0.08 deleterious(0.01) benign(0.009) TCGA-BR-8364-01 11 48286169 48286169 T A OR4X1 Missense_Mutation p.S253T 0.08 tolerated(0.14) benign(0.3) TCGA-BR-8364-01 15 81225778 81225778 A G KIAA1199 Missense_Mutation p.I996V 0.11 tolerated(0.46) benign(0.007) TCGA-BR-8364-01 16 68842463 68842463 T C CDH1 Missense_Mutation p.L175P 0.29 deleterious(0.02) probably_damaging(0.999) TCGA-BR-8364-01 18 22807194 22807194 C G ZNF521 Missense_Mutation p.G230R 0.13 tolerated(0.4) possibly_damaging(0.866) TCGA-BR-8364-01 19 18956872 18956872 C G UPF1 Missense_Mutation p.F105L 0.09 tolerated(0.17) benign(0.261) TCGA-BR-8364-01 19 49183667 49183667 G A RN7SL345P 5'Flank 0.13 TCGA-BR-8364-01 19 815788 815788 G A LPPR3 Missense_Mutation p.P47S 0.11 deleterious(0) probably_damaging(0.986) TCGA-BR-8364-01 1 40536131 40536131 G A CAP1 Missense_Mutation p.D383N 0.10 deleterious(0.02) probably_damaging(0.988) TCGA-BR-8364-01 1 67199453 67199453 A G SGIP1 Missense_Mutation p.N641D 0.12 tolerated(0.79) benign(0.11) TCGA-BR-8364-01 20 3672111 3672111 G A SIGLEC1 Silent p.H1489H 0.06 TCGA-BR-8364-01 20 43572195 43572195 G T TOMM34 Missense_Mutation p.Q242K 0.08 tolerated(0.3) benign(0.219) TCGA-BR-8364-01 2 133174712 133174712 C G GPR39 Missense_Mutation p.L33V 0.11 tolerated(0.11) possibly_damaging(0.563) TCGA-BR-8364-01 3 111692580 111692580 C T PHLDB2 Silent p.D1179D 0.14 TCGA-BR-8364-01 3 138374293 138374293 C T PIK3CB Missense_Mutation p.E1051K 0.19 deleterious(0.03) possibly_damaging(0.883) TCGA-BR-8364-01 3 52819116 52819116 C T ITIH1 Silent p.P488P 0.08 TCGA-BR-8364-01 5 140588900 140588900 G C PCDHB12 Missense_Mutation p.E141Q 0.10 deleterious_low_confidence(0.01) benign(0.034) TCGA-BR-8364-01 6 142623464 142623464 A G GPR126 5'UTR 0.24 TCGA-BR-8364-01 6 43214429 43214429 G A TTBK1 Missense_Mutation p.E11K 0.14 possibly_damaging(0.736) TCGA-BR-8364-01 6 75884763 75884763 T C COL12A1 Missense_Mutation p.T901A 0.11 probably_damaging(0.986) TCGA-BR-8364-01 7 7412686 7412686 G A COL28A1 Silent p.L951L 0.12 TCGA-BR-8364-01 8 105257239 105257239 C T RIMS2 Nonsense_Mutation p.R1144* 0.19 TCGA-BR-8364-01 8 22079030 22079030 G A PHYHIP Missense_Mutation p.R277C 0.11 tolerated(0.18) benign(0.003) TCGA-BR-8364-01 9 137622102 137622102 G A COL5A1 Silent p.T315T 0.11 TCGA-BR-8364-01 9 95396678 95396678 G A IPPK Missense_Mutation p.A387V 0.12 deleterious(0) probably_damaging(0.997) TCGA-BR-8364-01 X 48161149 48161149 T C SSX9 Intron 0.07 TCGA-BR-8365-01 11 9199806 9199806 A T DENND5A Missense_Mutation p.D593E 0.09 tolerated(0.27) possibly_damaging(0.749) TCGA-BR-8365-01 12 108686331 108686331 G A CMKLR1 Missense_Mutation p.R137C 0.12 deleterious(0) probably_damaging(1) TCGA-BR-8365-01 12 69230464 69230464 A C MDM2 Missense_Mutation p.T285P 0.17 deleterious(0) possibly_damaging(0.624) TCGA-BR-8365-01 13 88329455 88329455 C A SLITRK5 Silent p.R604R 0.10 TCGA-BR-8365-01 14 19988292 19988292 G A POTEM 3'UTR 0.10 TCGA-BR-8365-01 14 76620846 76620846 G A GPATCH2L Missense_Mutation p.R47H 0.09 deleterious(0.02) probably_damaging(0.999) TCGA-BR-8365-01 15 76019992 76019992 C T ODF3L1 3'UTR 0.12 TCGA-BR-8365-01 16 4833960 4833960 C T SEPT12 Missense_Mutation p.V162M 0.10 deleterious(0) probably_damaging(0.977) TCGA-BR-8365-01 17 65628319 65628319 G A PITPNC1 Missense_Mutation p.D143N 0.10 deleterious(0.02) possibly_damaging(0.907) TCGA-BR-8365-01 19 41822433 41822433 G A CCDC97 Missense_Mutation p.S64N 0.12 tolerated(0.43) benign(0.002) TCGA-BR-8365-01 19 6495726 6495726 G A TUBB4A Missense_Mutation p.R262C 0.12 deleterious_low_confidence(0.05) benign(0.358) TCGA-BR-8365-01 1 159166790 159166790 G A CADM3 Missense_Mutation p.G332S 0.06 tolerated(0.51) benign(0.04) TCGA-BR-8365-01 1 196696029 196696029 C T CFH Missense_Mutation p.T732M 0.08 deleterious(0.04) benign(0.041) TCGA-BR-8365-01 1 27057721 27057722 - A ARID1A Frame_Shift_Ins p.H477Qfs*146 0.13 TCGA-BR-8365-01 2 155099307 155099307 G A GALNT13 Missense_Mutation p.R192H 0.10 deleterious(0) probably_damaging(0.969) TCGA-BR-8365-01 2 182409462 182409462 T G CERKL Missense_Mutation p.K470Q 0.12 deleterious(0) probably_damaging(0.999) TCGA-BR-8365-01 2 201722526 201722526 G A CLK1 Silent p.Y291Y 0.15 TCGA-BR-8365-01 2 234749948 234749948 T C HJURP Missense_Mutation p.K493R 0.12 tolerated(0.13) benign(0.003) TCGA-BR-8365-01 3 130737361 130737361 A C ASTE1 Missense_Mutation p.I501S 0.14 tolerated(0.5) benign(0.008) TCGA-BR-8365-01 5 141014457 141014457 C T HDAC3 Missense_Mutation p.D68N 0.12 tolerated(0.24) benign(0.005) TCGA-BR-8365-01 7 102572363 102572363 G A FBXL13 Nonsense_Mutation p.Q248* 0.12 TCGA-BR-8365-01 7 27186928 27186928 C T HOXA6 Silent p.A147A 0.06 TCGA-BR-8365-01 7 44611094 44611094 G T DDX56 Missense_Mutation p.S296Y 0.08 deleterious(0) probably_damaging(0.993) TCGA-BR-8365-01 8 102731642 102731642 G A NCALD Silent p.F72F 0.09 TCGA-BR-8365-01 8 10755990 10755990 C T XKR6 Silent p.P466P 0.22 TCGA-BR-8365-01 8 121457555 121457555 C A MRPL13 5'UTR 0.20 TCGA-BR-8365-01 8 121457556 121457556 C A MRPL13 5'UTR 0.20 TCGA-BR-8365-01 9 139370971 139370971 G A SEC16A Missense_Mutation p.S366L 0.14 deleterious(0.02) benign(0.004) TCGA-BR-8365-01 X 38144777 38144777 T A RPGR 3'UTR 0.16 TCGA-BR-8365-01 X 84363373 84363373 G A SATL1 Missense_Mutation p.P201L 0.08 tolerated(0.44) possibly_damaging(0.851) TCGA-BR-8366-01 10 116930868 116930868 A C ATRNL1 Missense_Mutation p.N389T 0.13 deleterious(0.04) benign(0.403) TCGA-BR-8366-01 10 118321115 118321115 C T PNLIP Missense_Mutation p.S434F 0.07 deleterious(0) possibly_damaging(0.87) TCGA-BR-8366-01 10 118435928 118435928 T C HSPA12A Missense_Mutation p.S458G 0.16 tolerated(0.47) benign(0.001) TCGA-BR-8366-01 10 121285571 121285571 A C RGS10 Missense_Mutation p.D76E 0.23 tolerated(0.75) benign(0.002) TCGA-BR-8366-01 10 134563341 134563341 G A INPP5A Missense_Mutation p.G299S 0.15 deleterious(0.02) probably_damaging(0.983) TCGA-BR-8366-01 10 21101765 21101765 G T NEBL Missense_Mutation p.S817R 0.09 deleterious(0.01) probably_damaging(0.951) TCGA-BR-8366-01 10 23482704 23482704 G T PTF1A Nonsense_Mutation p.E286* 0.16 TCGA-BR-8366-01 10 25887234 25887234 C T GPR158 Silent p.H893H 0.11 TCGA-BR-8366-01 10 37451723 37451723 A G ANKRD30A Missense_Mutation p.K594R 0.15 tolerated(0.34) benign(0.064) TCGA-BR-8366-01 11 118916191 118916191 A G HYOU1 3'UTR 0.20 TCGA-BR-8366-01 11 2604770 2604770 C T KCNQ1 Missense_Mutation p.P343S 0.12 deleterious(0) probably_damaging(0.98) TCGA-BR-8366-01 11 4615839 4615839 T G OR52I1 Missense_Mutation p.L191V 0.12 deleterious(0) probably_damaging(1) TCGA-BR-8366-01 11 55563231 55563231 A G OR5D14 Missense_Mutation p.H67R 0.09 deleterious(0.02) benign(0.172) TCGA-BR-8366-01 11 62190595 62190595 A G SCGB1A1 3'UTR 0.13 TCGA-BR-8366-01 11 63312231 63312231 C T RARRES3 Missense_Mutation p.P86L 0.12 deleterious(0) probably_damaging(1) TCGA-BR-8366-01 12 110933945 110933945 T C VPS29 Missense_Mutation p.K27E 0.21 deleterious(0) benign(0.402) TCGA-BR-8366-01 12 132326256 132326256 T C MMP17 Missense_Mutation p.I265T 0.31 deleterious(0) probably_damaging(0.978) TCGA-BR-8366-01 12 20523121 20523121 C T PDE3A Silent p.S301S 0.14 TCGA-BR-8366-01 12 21757519 21757519 C T GYS2 Missense_Mutation p.R3Q 0.39 tolerated_low_confidence(0.26) benign(0.323) TCGA-BR-8366-01 12 21807527 21807527 C T LDHB Missense_Mutation p.V27M 0.10 deleterious(0) possibly_damaging(0.474) TCGA-BR-8366-01 12 25264751 25264751 G A CASC1 Silent p.I578I 0.11 TCGA-BR-8366-01 12 25380275 25380275 T G KRAS Missense_Mutation p.Q61H 0.44 deleterious(0) benign(0.371) TCGA-BR-8366-01 12 2968120 2968120 A G FOXM1 Missense_Mutation p.L697P 0.21 deleterious(0) probably_damaging(0.967) TCGA-BR-8366-01 12 52754645 52754645 A G KRT85 Missense_Mutation p.F506L 0.16 deleterious_low_confidence(0) unknown(0) TCGA-BR-8366-01 12 53587072 53587072 C T ITGB7 Silent p.G526G 0.10 TCGA-BR-8366-01 12 6078421 6078421 T G VWF Missense_Mutation p.Q2562P 0.18 deleterious(0) possibly_damaging(0.507) TCGA-BR-8366-01 12 66308705 66308705 T G HMGA2 Intron 0.22 TCGA-BR-8366-01 12 94976127 94976127 C T TMCC3 Missense_Mutation p.R89H 0.09 deleterious(0) probably_damaging(0.997) TCGA-BR-8366-01 13 23824817 23824817 C T SGCG Missense_Mutation p.R116C 0.13 deleterious(0.03) benign(0.178) TCGA-BR-8366-01 13 23898715 23898715 C T SGCG 3'UTR 0.17 TCGA-BR-8366-01 13 49795336 49795336 G A MLNR Missense_Mutation p.G288E 0.22 tolerated(0.27) benign(0.345) TCGA-BR-8366-01 13 76111944 76111944 G A COMMD6 5'UTR 0.19 TCGA-BR-8366-01 14 19378049 19378049 T A OR11H12 Silent p.T152T 0.06 TCGA-BR-8366-01 14 51383390 51383390 A G PYGL Silent p.F354F 0.15 TCGA-BR-8366-01 15 59548485 59548485 G T MYO1E Silent p.I110I 0.14 TCGA-BR-8366-01 15 65041332 65041332 G A RBPMS2 Silent p.P95P 0.14 TCGA-BR-8366-01 15 73580780 73580780 A G NEO1 Silent p.P1179P 0.17 TCGA-BR-8366-01 15 80743280 80743280 G A ARNT2 Missense_Mutation p.G31R 0.20 deleterious(0) probably_damaging(0.956) TCGA-BR-8366-01 15 80867400 80867400 T C ARNT2 Missense_Mutation p.S488P 0.13 tolerated(0.14) possibly_damaging(0.665) TCGA-BR-8366-01 15 85328011 85328011 A G ZNF592 Missense_Mutation p.D702G 0.16 deleterious(0) probably_damaging(0.999) TCGA-BR-8366-01 16 12571649 12571649 A C SNX29 Missense_Mutation p.K704T 0.15 tolerated(0.08) benign(0.103) TCGA-BR-8366-01 16 15818135 15818135 A C MYH11 Missense_Mutation p.D1423E 0.12 probably_damaging(0.999) TCGA-BR-8366-01 16 1841347 1841347 A C IGFALS Missense_Mutation p.F396V 0.12 deleterious(0) probably_damaging(0.998) TCGA-BR-8366-01 16 2052383 2052383 A C ZNF598 Missense_Mutation p.F240C 0.21 probably_damaging(0.987) TCGA-BR-8366-01 16 48173097 48173097 A G ABCC12 Missense_Mutation p.Y270H 0.07 deleterious(0.01) probably_damaging(0.928) TCGA-BR-8366-01 16 4835891 4835891 T G SEPT12 Splice_Site p.X98_splice 0.11 TCGA-BR-8366-01 16 56857749 56857749 T G NUP93 Missense_Mutation p.L262R 0.11 deleterious(0) probably_damaging(0.995) TCGA-BR-8366-01 16 68224974 68224974 C T NFATC3 Missense_Mutation p.S801F 0.07 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BR-8366-01 16 737013 737013 C T WDR24 Missense_Mutation p.A355T 0.18 tolerated(0.23) possibly_damaging(0.656) TCGA-BR-8366-01 16 75203884 75203884 A G ZFP1 Silent p.G292G 0.23 TCGA-BR-8366-01 16 84189352 84189352 T G DNAAF1 Missense_Mutation p.L247V 0.08 deleterious(0) probably_damaging(0.997) TCGA-BR-8366-01 17 10322320 10322320 A C MYH8 Missense_Mutation p.F80V 0.20 tolerated(0.46) benign(0.022) TCGA-BR-8366-01 17 18541974 18541974 T G TBC1D28 Missense_Mutation p.K80T 0.15 deleterious(0) possibly_damaging(0.846) TCGA-BR-8366-01 17 2323552 2323552 C T METTL16 Silent p.R467R 0.19 TCGA-BR-8366-01 17 46262125 46262125 G A SKAP1 Missense_Mutation p.S176F 0.11 tolerated(0.08) benign(0.208) TCGA-BR-8366-01 17 4835939 4835939 T G GP1BA Missense_Mutation p.L14V 0.14 deleterious(0.03) unknown(0) TCGA-BR-8366-01 17 61897524 61897524 T G FTSJ3 Silent p.R756R 0.17 TCGA-BR-8366-01 17 66267274 66267274 C T SLC16A6 Missense_Mutation p.G343R 0.14 deleterious(0.01) probably_damaging(1) TCGA-BR-8366-01 17 7476162 7476162 G A EIF4A1 Translation_Start_Site p.M1? 0.10 deleterious_low_confidence(0.01) benign(0.064) TCGA-BR-8366-01 17 7671346 7671346 T C DNAH2 Silent p.F1268F 0.19 TCGA-BR-8366-01 17 78409946 78409946 G A ENDOV 3'UTR 0.14 TCGA-BR-8366-01 18 22040828 22040828 C T HRH4 Missense_Mutation p.L46F 0.15 deleterious(0) probably_damaging(1) TCGA-BR-8366-01 18 480739 480739 T A COLEC12 Missense_Mutation p.E9V 0.25 deleterious(0) possibly_damaging(0.788) TCGA-BR-8366-01 18 48604747 48604747 C T SMAD4 Silent p.C523C 0.11 TCGA-BR-8366-01 18 48604748 48604748 T A SMAD4 Missense_Mutation p.W524R 0.11 deleterious(0) probably_damaging(1) TCGA-BR-8366-01 18 5956081 5956081 A C L3MBTL4 3'UTR 0.18 TCGA-BR-8366-01 19 12940627 12940627 G T RTBDN Missense_Mutation p.A88E 0.12 tolerated(0.7) benign(0.093) TCGA-BR-8366-01 19 17664149 17664149 T C FAM129C Missense_Mutation p.F624S 0.10 tolerated_low_confidence(0.17) probably_damaging(0.934) TCGA-BR-8366-01 19 20295165 20295165 G A ZNF486 Missense_Mutation p.E11K 0.10 tolerated_low_confidence(0.07) benign(0.009) TCGA-BR-8366-01 19 22157177 22157177 T C ZNF208 Missense_Mutation p.K220R 0.08 tolerated(0.27) benign(0.219) TCGA-BR-8366-01 19 22362948 22362948 T G ZNF676 Missense_Mutation p.K524T 0.17 deleterious(0.04) probably_damaging(0.998) TCGA-BR-8366-01 19 3005565 3005565 G A TLE2 Missense_Mutation p.T589M 0.28 deleterious(0) probably_damaging(0.932) TCGA-BR-8366-01 19 35832422 35832422 T A CD22 Missense_Mutation p.S562T 0.18 tolerated(0.21) benign(0.123) TCGA-BR-8366-01 19 3600235 3600235 C T TBXA2R Missense_Mutation p.G133D 0.44 deleterious(0) probably_damaging(1) TCGA-BR-8366-01 19 36398163 36398163 G A TYROBP Missense_Mutation p.A78V 0.38 tolerated(0.3) benign(0.002) TCGA-BR-8366-01 19 36940481 36940481 T C ZNF566 Missense_Mutation p.K220E 0.22 deleterious(0) probably_damaging(0.974) TCGA-BR-8366-01 19 41263270 41263270 A G SNRPA Missense_Mutation p.Q36R 0.12 deleterious(0) possibly_damaging(0.518) TCGA-BR-8366-01 19 4249309 4249309 G A CCDC94 Missense_Mutation p.A37T 0.17 deleterious(0.04) probably_damaging(0.997) TCGA-BR-8366-01 19 43528974 43528974 G T PSG11 Missense_Mutation p.T100K 0.11 tolerated(0.05) benign(0.211) TCGA-BR-8366-01 19 49813671 49813671 C A SLC6A16 Missense_Mutation p.G171V 0.25 deleterious(0) benign(0.21) TCGA-BR-8366-01 19 50826555 50826555 T G KCNC3 Missense_Mutation p.K552T 0.21 deleterious(0) probably_damaging(0.997) TCGA-BR-8366-01 19 54080139 54080139 A G ZNF331 Missense_Mutation p.K109E 0.21 tolerated(0.47) benign(0.037) TCGA-BR-8366-01 19 54973460 54973461 TG - LENG9 Frame_Shift_Del p.Q439Vfs*58 0.09 TCGA-BR-8366-01 19 55331283 55331283 A C KIR3DL1 Missense_Mutation p.K157N 0.28 deleterious(0.01) benign(0.2) TCGA-BR-8366-01 19 55708037 55708037 G A PTPRH Missense_Mutation p.R704W 0.15 benign(0.063) TCGA-BR-8366-01 19 57088127 57088127 T C ZNF470 Silent p.D110D 0.08 TCGA-BR-8366-01 19 57765493 57765493 T G ZNF805 Missense_Mutation p.F436V 0.27 deleterious(0) probably_damaging(1) TCGA-BR-8366-01 19 58198809 58198809 G A ZNF551 Missense_Mutation p.R389K 0.15 tolerated(0.25) benign(0.047) TCGA-BR-8366-01 1 104122045 104122045 G A AMY2B Missense_Mutation p.D487N 0.15 tolerated(0.31) benign(0.012) TCGA-BR-8366-01 1 11579842 11579842 A T PTCHD2 Missense_Mutation p.N702I 0.22 tolerated(0.14) benign(0.15) TCGA-BR-8366-01 1 144892483 144892483 A T PDE4DIP Intron 0.09 TCGA-BR-8366-01 1 149898269 149898269 T C SF3B4 Silent p.P235P 0.19 TCGA-BR-8366-01 1 153955315 153955315 C T RAB13 Intron 0.18 TCGA-BR-8366-01 1 157738349 157738349 G T FCRL2 Silent p.T246T 0.14 TCGA-BR-8366-01 1 157803288 157803288 T C CD5L Missense_Mutation p.R245G 0.16 deleterious(0) possibly_damaging(0.698) TCGA-BR-8366-01 1 173506170 173506170 A G SLC9C2 Silent p.F522F 0.12 TCGA-BR-8366-01 1 180957480 180957480 A C STX6 Missense_Mutation p.L164W 0.16 deleterious(0.01) benign(0.332) TCGA-BR-8366-01 1 204944442 204944442 A G NFASC Silent p.R534R 0.15 TCGA-BR-8366-01 1 218520217 218520217 T G TGFB2 Silent p.P58P 0.12 TCGA-BR-8366-01 1 245250690 245250690 A G EFCAB2 3'UTR 0.26 TCGA-BR-8366-01 1 247588601 247588601 A C NLRP3 Missense_Mutation p.K619T 0.10 tolerated(0.09) possibly_damaging(0.756) TCGA-BR-8366-01 1 247752318 247752318 C T OR2G2 Silent p.V219V 0.18 TCGA-BR-8366-01 1 37949086 37949087 - A ZC3H12A Frame_Shift_Ins p.L560Afs*40 0.10 TCGA-BR-8366-01 1 68910260 68910260 T A RPE65 Missense_Mutation p.N150I 0.22 deleterious(0.03) probably_damaging(1) TCGA-BR-8366-01 1 9011657 9011657 C T CA6 Intron 0.14 TCGA-BR-8366-01 20 34136347 34136347 C T ERGIC3 Missense_Mutation p.R183W 0.12 deleterious(0) benign(0.378) TCGA-BR-8366-01 20 57829765 57829765 C T ZNF831 Silent p.S1667S 0.13 TCGA-BR-8366-01 21 43714709 43714709 T G ABCG1 Missense_Mutation p.F583V 0.11 deleterious(0.01) probably_damaging(0.976) TCGA-BR-8366-01 22 22842771 22842771 T G ZNF280B Missense_Mutation p.N318T 0.16 deleterious(0.03) possibly_damaging(0.589) TCGA-BR-8366-01 22 26692998 26692998 C T SEZ6L Missense_Mutation p.R372W 0.16 deleterious(0) probably_damaging(0.997) TCGA-BR-8366-01 22 29884869 29884869 G A NEFH Missense_Mutation p.G414S 0.10 tolerated(0.29) unknown(0) TCGA-BR-8366-01 22 30421750 30421750 A G MTMR3 Missense_Mutation p.D1186G 0.18 deleterious(0.03) probably_damaging(0.999) TCGA-BR-8366-01 2 103318883 103318883 A C SLC9A2 Missense_Mutation p.K589N 0.15 tolerated(0.44) benign(0.101) TCGA-BR-8366-01 2 107049650 107049650 T G RGPD3 Missense_Mutation p.N766T 0.08 tolerated(0.05) possibly_damaging(0.693) TCGA-BR-8366-01 2 10927522 10927522 C T PDIA6 Missense_Mutation p.A348T 0.20 tolerated(0.16) benign(0.037) TCGA-BR-8366-01 2 109383177 109383177 A T RANBP2 Missense_Mutation p.K2061I 0.13 deleterious(0) probably_damaging(1) TCGA-BR-8366-01 2 112786254 112786254 G A MERTK Nonsense_Mutation p.W938* 0.13 TCGA-BR-8366-01 2 132240409 132240409 C T TUBA3D Silent p.G447G 0.16 TCGA-BR-8366-01 2 166535277 166535277 G T CSRNP3 Nonsense_Mutation p.E258* 0.12 TCGA-BR-8366-01 2 172953032 172953032 C A DLX1 3'UTR 0.08 TCGA-BR-8366-01 2 179429558 179429558 C T TTN Missense_Mutation p.G27101S 0.13 TCGA-BR-8366-01 2 187627498 187627498 A G FAM171B Missense_Mutation p.K810R 0.17 deleterious(0) possibly_damaging(0.832) TCGA-BR-8366-01 2 39944200 39944200 G A TMEM178A Missense_Mutation p.D235N 0.16 deleterious(0.01) possibly_damaging(0.795) TCGA-BR-8366-01 2 46986595 46986595 A G SOCS5 Missense_Mutation p.E309G 0.20 tolerated(0.1) benign(0.057) TCGA-BR-8366-01 2 54014465 54014465 G A ERLEC1 Missense_Mutation p.D40N 0.06 tolerated(0.15) benign(0.04) TCGA-BR-8366-01 2 56144910 56144910 T G EFEMP1 Missense_Mutation p.N136T 0.15 tolerated(0.46) benign(0.011) TCGA-BR-8366-01 2 71058138 71058138 A C CD207 3'UTR 0.23 TCGA-BR-8366-01 2 73303283 73303283 G A RAB11FIP5 Silent p.A532A 0.09 TCGA-BR-8366-01 2 89976481 89976481 C T IGKV2D-30 Missense_Mutation p.H118Y 0.10 tolerated(0.18) benign(0.003) TCGA-BR-8366-01 2 95947106 95947106 T C PROM2 Missense_Mutation p.L515P 0.13 deleterious(0) probably_damaging(0.997) TCGA-BR-8366-01 3 107491699 107491699 A C BBX Missense_Mutation p.Q377H 0.19 deleterious(0.04) benign(0.001) TCGA-BR-8366-01 3 15778572 15778572 A T ANKRD28 Missense_Mutation p.L144I 0.17 deleterious(0.02) probably_damaging(0.997) TCGA-BR-8366-01 3 172162986 172162986 A G GHSR Missense_Mutation p.S356P 0.07 tolerated(0.06) possibly_damaging(0.642) TCGA-BR-8366-01 3 178917478 178917478 G A PIK3CA Missense_Mutation p.G118D 0.13 tolerated(0.05) possibly_damaging(0.704) TCGA-BR-8366-01 3 178917669 178917669 T C PIK3CA Missense_Mutation p.Y182H 0.22 tolerated(0.55) benign(0.004) TCGA-BR-8366-01 3 197640623 197640623 A G IQCG Intron 0.17 TCGA-BR-8366-01 3 38951654 38951654 G T SCN11A Missense_Mutation p.P335H 0.07 deleterious(0) probably_damaging(1) TCGA-BR-8366-01 3 44611431 44611431 A G ZKSCAN7 Missense_Mutation p.K277E 0.17 tolerated(1) benign(0) TCGA-BR-8366-01 3 45153868 45153868 A C CDCP1 Missense_Mutation p.L121R 0.17 deleterious(0) probably_damaging(0.983) TCGA-BR-8366-01 3 47456465 47456465 C A SCAP Missense_Mutation p.S1053I 0.22 deleterious(0.01) benign(0.148) TCGA-BR-8366-01 3 49294821 49294821 A G CCDC36 3'UTR 0.13 TCGA-BR-8366-01 3 49413010 49413010 G A RHOA Missense_Mutation p.R5W 0.18 deleterious(0.02) benign(0.007) TCGA-BR-8366-01 3 55038842 55038842 G A CACNA2D3 Missense_Mutation p.D915N 0.09 tolerated(0.51) possibly_damaging(0.461) TCGA-BR-8366-01 4 101946971 101946971 G A PPP3CA 3'UTR 0.22 TCGA-BR-8366-01 4 104030045 104030045 A C CENPE Silent p.S2642S 0.14 TCGA-BR-8366-01 4 115998026 115998026 T G NDST4 Missense_Mutation p.K56T 0.10 tolerated_low_confidence(0.19) benign(0.098) TCGA-BR-8366-01 4 128726362 128726362 A G HSPA4L Missense_Mutation p.R374G 0.12 deleterious(0) probably_damaging(0.999) TCGA-BR-8366-01 4 134072953 134072953 C T PCDH10 Missense_Mutation p.A553V 0.08 deleterious(0.01) benign(0.223) TCGA-BR-8366-01 4 174169235 174169235 A G GALNT7 Silent p.G77G 0.11 TCGA-BR-8366-01 4 184233538 184233538 G C WWC2 Missense_Mutation p.E1143D 0.12 tolerated(0.33) probably_damaging(0.996) TCGA-BR-8366-01 4 4389469 4389469 T C NSG1 Missense_Mutation p.F38S 0.12 tolerated(0.4) probably_damaging(0.971) TCGA-BR-8366-01 4 72316960 72316960 G A SLC4A4 Missense_Mutation p.D422N 0.09 tolerated(0.17) benign(0.15) TCGA-BR-8366-01 5 140516596 140516596 A G PCDHB5 Missense_Mutation p.E527G 0.11 deleterious_low_confidence(0) benign(0.081) TCGA-BR-8366-01 5 140627353 140627353 T A PCDHB15 Missense_Mutation p.L736Q 0.14 deleterious_low_confidence(0) possibly_damaging(0.709) TCGA-BR-8366-01 5 140719560 140719560 A C PCDHGA2 Missense_Mutation p.N341T 0.18 deleterious_low_confidence(0) probably_damaging(1) TCGA-BR-8366-01 5 157181043 157181043 A C LSM11 Missense_Mutation p.K207T 0.21 deleterious(0.01) benign(0.258) TCGA-BR-8366-01 5 173316607 173316607 T C CPEB4 5'UTR 0.14 TCGA-BR-8366-01 5 34811167 34811167 C A RAI14 Silent p.I170I 0.14 TCGA-BR-8366-01 5 65892449 65892449 C T MAST4 5'UTR 0.29 TCGA-BR-8366-01 6 118804953 118804953 T G CEP85L Missense_Mutation p.K505N 0.11 deleterious(0) probably_damaging(0.963) TCGA-BR-8366-01 6 13307828 13307828 T G TBC1D7 Intron 0.17 TCGA-BR-8366-01 6 133846387 133846387 A G EYA4 Missense_Mutation p.K612E 0.07 deleterious(0) benign(0.025) TCGA-BR-8366-01 6 159420551 159420551 C T RSPH3 Missense_Mutation p.R153Q 0.06 tolerated(0.58) benign(0.008) TCGA-BR-8366-01 6 167754950 167754950 T C TTLL2 Missense_Mutation p.L521P 0.16 tolerated(0.13) benign(0.007) TCGA-BR-8366-01 6 29574733 29574733 T C GABBR1 Missense_Mutation p.M720V 0.16 tolerated(0.43) benign(0.001) TCGA-BR-8366-01 6 3226489 3226489 G A TUBB2B Missense_Mutation p.P61S 0.19 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-BR-8366-01 6 52852195 52852197 TTC - GSTA4 In_Frame_Del p.E33del 0.15 TCGA-BR-8366-01 6 55145185 55145185 C T HCRTR2 Missense_Mutation p.H350Y 0.12 deleterious(0) probably_damaging(0.92) TCGA-BR-8366-01 7 102016313 102016313 A G PRKRIP1 5'UTR 0.15 TCGA-BR-8366-01 7 114210930 114210930 A T FOXP2 Silent p.T109T 0.10 TCGA-BR-8366-01 7 116397506 116397506 T G MET Silent p.V626V 0.17 TCGA-BR-8366-01 7 134136460 134136460 C T AKR1B1 Missense_Mutation p.V38I 0.10 tolerated(0.57) benign(0.002) TCGA-BR-8366-01 7 140453133 140453133 T G BRAF Missense_Mutation p.K601T 0.15 deleterious(0.01) benign(0.098) TCGA-BR-8366-01 7 143421819 143421819 G A FAM115C Missense_Mutation p.G845E 0.11 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-BR-8366-01 7 24905028 24905028 A G OSBPL3 Silent p.S202S 0.12 TCGA-BR-8366-01 7 35057571 35057571 T G DPY19L1 Missense_Mutation p.T39P 0.07 tolerated(0.1) possibly_damaging(0.633) TCGA-BR-8366-01 7 64838808 64838808 G A ZNF92 5'UTR 0.25 TCGA-BR-8366-01 7 99655484 99655484 A C ZSCAN21 Missense_Mutation p.E188A 0.17 tolerated(0.3) benign(0.009) TCGA-BR-8366-01 7 99808704 99808704 G A STAG3 Silent p.P1103P 0.17 TCGA-BR-8366-01 8 106813505 106813505 C T ZFPM2 Missense_Mutation p.H399Y 0.11 deleterious(0.01) benign(0.153) TCGA-BR-8366-01 8 113418874 113418874 G A CSMD3 Silent p.V1896V 0.11 TCGA-BR-8366-01 8 121170389 121170389 A C COL14A1 Silent p.R37R 0.12 TCGA-BR-8366-01 8 144658639 144658639 G A NAPRT1 Nonsense_Mutation p.Q329* 0.11 TCGA-BR-8366-01 8 1728422 1728422 T G CLN8 Missense_Mutation p.W184G 0.15 tolerated(0.23) benign(0.129) TCGA-BR-8366-01 8 30938688 30938688 A C WRN Missense_Mutation p.K382T 0.10 tolerated(0.19) benign(0.009) TCGA-BR-8366-01 8 55542502 55542502 T G RP1 Missense_Mutation p.N2020K 0.13 deleterious(0.04) benign(0.141) TCGA-BR-8366-01 9 103015323 103015323 A T INVS Nonsense_Mutation p.R457* 0.09 TCGA-BR-8366-01 9 114454546 114454546 T G C9orf84 Missense_Mutation p.K1173N 0.10 tolerated(0.09) benign(0.145) TCGA-BR-8366-01 9 115651953 115651953 C T SLC46A2 Missense_Mutation p.G337S 0.14 deleterious(0) probably_damaging(1) TCGA-BR-8366-01 9 117835903 117835903 C T TNC Missense_Mutation p.A1065T 0.20 tolerated(0.26) benign(0.045) TCGA-BR-8366-01 9 125391471 125391471 A G OR1B1 Missense_Mutation p.L115P 0.15 deleterious(0) probably_damaging(0.956) TCGA-BR-8366-01 9 136516786 136516786 G A DBH Missense_Mutation p.A408T 0.24 deleterious(0) probably_damaging(0.995) TCGA-BR-8366-01 9 138588459 138588459 T C SOHLH1 Silent p.S220S 0.16 TCGA-BR-8366-01 9 20414419 20414419 G A MLLT3 Missense_Mutation p.P142L 0.10 tolerated(0.38) benign(0.004) TCGA-BR-8366-01 9 35091599 35091599 G A PIGO Missense_Mutation p.P762L 0.10 deleterious(0) probably_damaging(1) TCGA-BR-8366-01 9 98774684 98774684 T G ERCC6L2 Silent p.S256S 0.23 TCGA-BR-8366-01 X 101138752 101138752 T C ZMAT1 Silent p.K549K 0.14 TCGA-BR-8366-01 X 102978850 102978850 A T GLRA4 Missense_Mutation p.S171T 0.17 tolerated(0.06) probably_damaging(0.999) TCGA-BR-8366-01 X 129267364 129267364 C T AIFM1 Missense_Mutation p.A458T 0.13 deleterious(0) probably_damaging(0.996) TCGA-BR-8366-01 X 134987488 134987488 G A SAGE1 Missense_Mutation p.A131T 0.21 tolerated(0.3) benign(0.045) TCGA-BR-8366-01 X 134991106 134991106 C A SAGE1 Missense_Mutation p.P509T 0.11 deleterious(0) benign(0.154) TCGA-BR-8366-01 X 149639020 149639020 C T MAMLD1 Missense_Mutation p.T367M 0.15 deleterious(0) possibly_damaging(0.817) TCGA-BR-8366-01 X 151424324 151424324 T C GABRA3 Silent p.S159S 0.16 TCGA-BR-8366-01 X 153040751 153040751 G A PLXNB3 Silent p.S1432S 0.50 TCGA-BR-8366-01 X 154225316 154225316 A C F8 Missense_Mutation p.L107R 0.17 deleterious(0) probably_damaging(0.994) TCGA-BR-8366-01 X 39916463 39916463 G A BCOR Nonsense_Mutation p.R1514* 0.14 TCGA-BR-8366-01 X 40513617 40513617 T G MED14 Missense_Mutation p.Q1430H 0.13 tolerated(0.13) benign(0.013) TCGA-BR-8366-01 X 41027344 41027344 A G USP9X Missense_Mutation p.K837E 0.19 tolerated(0.34) benign(0.001) TCGA-BR-8366-01 X 54814956 54814956 A C ITIH6 Missense_Mutation p.V248G 0.10 deleterious(0.04) possibly_damaging(0.791) TCGA-BR-8366-01 X 76918944 76918944 G T ATRX Missense_Mutation p.D1349E 0.13 probably_damaging(0.998) TCGA-BR-8366-01 X 83128752 83128752 G T CYLC1 Missense_Mutation p.D346Y 0.15 deleterious(0.01) unknown(0) TCGA-BR-8366-01 X 8433473 8433473 A G VCX3B 5'UTR 0.08 TCGA-BR-8366-01 X 96139827 96139827 G A RPA4 Missense_Mutation p.R173H 0.12 tolerated(0.06) benign(0.225) TCGA-BR-8367-01 10 105037351 105037351 C T INA Missense_Mutation p.A128V 0.40 tolerated(0.19) benign(0.188) TCGA-BR-8367-01 10 121285598 121285598 A G RGS10 Silent p.N67N 0.09 TCGA-BR-8367-01 10 7409662 7409662 G T SFMBT2 Missense_Mutation p.H129N 0.15 deleterious(0) probably_damaging(0.998) TCGA-BR-8367-01 11 16776574 16776574 G A C11orf58 Missense_Mutation p.E159K 0.08 tolerated(0.34) possibly_damaging(0.558) TCGA-BR-8367-01 11 32605413 32605413 C G EIF3M 5'UTR 0.43 TCGA-BR-8367-01 12 10339108 10339108 G T TMEM52B Missense_Mutation p.G56V 0.16 tolerated(0.34) probably_damaging(0.97) TCGA-BR-8367-01 12 7640475 7640475 T G CD163 Missense_Mutation p.E543D 0.16 deleterious(0.02) probably_damaging(0.999) TCGA-BR-8367-01 12 97306476 97306476 T A NEDD1 Intron 0.17 TCGA-BR-8367-01 13 33016566 33016566 A T N4BP2L2 Missense_Mutation p.F703Y 0.14 deleterious(0.01) possibly_damaging(0.584) TCGA-BR-8367-01 13 73649903 73649903 A G KLF5 Missense_Mutation p.D418G 0.19 deleterious(0) probably_damaging(0.971) TCGA-BR-8367-01 15 48500152 48500152 C T SLC12A1 Missense_Mutation p.T79I 0.12 deleterious(0.01) benign(0.1) TCGA-BR-8367-01 15 83935703 83935703 C T BNC1 Missense_Mutation p.R107H 0.14 deleterious(0) possibly_damaging(0.863) TCGA-BR-8367-01 15 83936914 83936914 T A BNC1 Missense_Mutation p.D57V 0.11 deleterious(0) benign(0.094) TCGA-BR-8367-01 16 2160623 2160623 G A PKD1 Silent p.H1515H 0.20 TCGA-BR-8367-01 16 31424208 31424208 C T ITGAD Missense_Mutation p.A586V 0.10 deleterious(0) benign(0.123) TCGA-BR-8367-01 16 3639156 3639156 C T SLX4 Missense_Mutation p.A1495T 0.09 tolerated(0.11) benign(0.284) TCGA-BR-8367-01 16 65038662 65038662 C T CDH11 Silent p.G37G 0.30 TCGA-BR-8367-01 17 26097998 26097998 G A NOS2 Missense_Mutation p.R584W 0.19 deleterious(0) possibly_damaging(0.773) TCGA-BR-8367-01 17 39779266 39779266 C T KRT17 Missense_Mutation p.D151N 0.30 deleterious(0.02) benign(0.049) TCGA-BR-8367-01 17 56572740 56572740 C T MTMR4 Silent p.E921E 0.11 TCGA-BR-8367-01 17 70119762 70119763 - GG SOX9 Frame_Shift_Ins p.R257Gfs*23 0.15 TCGA-BR-8367-01 17 7212989 7212989 C T EIF5A Missense_Mutation p.A42V 0.10 deleterious(0) possibly_damaging(0.477) TCGA-BR-8367-01 17 7217635 7217635 C A GPS2 Nonsense_Mutation p.E98* 0.05 TCGA-BR-8367-01 17 9763299 9763299 A G GLP2R Missense_Mutation p.Y269C 0.17 deleterious(0) probably_damaging(0.996) TCGA-BR-8367-01 19 1785665 1785665 C T ATP8B3 Missense_Mutation p.V1066M 0.23 tolerated(0.11) benign(0.007) TCGA-BR-8367-01 19 51363525 51363525 G T KLK3 3'UTR 0.12 TCGA-BR-8367-01 19 57335705 57335705 G A PEG3 Nonsense_Mutation p.R107* 0.25 TCGA-BR-8367-01 19 58437970 58437970 G A ZNF418 Nonsense_Mutation p.R527* 0.19 TCGA-BR-8367-01 19 8613192 8613192 G A MYO1F Missense_Mutation p.R371C 0.23 deleterious(0.01) possibly_damaging(0.849) TCGA-BR-8367-01 19 9646889 9646889 G T ZNF426 Missense_Mutation p.S7Y 0.19 deleterious(0) benign(0.011) TCGA-BR-8367-01 1 110734707 110734707 C T SLC6A17 Silent p.D326D 0.07 TCGA-BR-8367-01 1 110741056 110741056 C T SLC6A17 Missense_Mutation p.S725L 0.22 deleterious_low_confidence(0) benign(0.004) TCGA-BR-8367-01 1 12885133 12885133 T C PRAMEF11 Silent p.Q326Q 0.13 TCGA-BR-8367-01 1 151378545 151378545 G A POGZ Missense_Mutation p.T989I 0.37 tolerated(1) probably_damaging(0.996) TCGA-BR-8367-01 1 152281969 152281969 C T FLG Missense_Mutation p.R1798Q 0.08 benign(0.238) TCGA-BR-8367-01 1 156823679 156823679 C T INSRR Missense_Mutation p.V168M 0.20 tolerated(0.06) probably_damaging(0.997) TCGA-BR-8367-01 1 181724429 181724429 G C CACNA1E Silent p.V1295V 0.11 TCGA-BR-8367-01 1 185958651 185958651 A C HMCN1 Missense_Mutation p.K1027T 0.22 probably_damaging(0.996) TCGA-BR-8367-01 1 204587730 204587730 C T LRRN2 Missense_Mutation p.R464Q 0.09 deleterious(0.01) benign(0.085) TCGA-BR-8367-01 1 2283132 2283132 G A MORN1 Intron 0.17 TCGA-BR-8367-01 1 23845525 23845525 C T E2F2 Missense_Mutation p.V279M 0.11 deleterious(0.01) probably_damaging(0.911) TCGA-BR-8367-01 1 248039564 248039564 G T TRIM58 Missense_Mutation p.G412W 0.04 deleterious(0) probably_damaging(1) TCGA-BR-8367-01 1 36921446 36921446 C G MRPS15 Silent p.R239R 0.14 TCGA-BR-8367-01 20 46292252 46292252 G T SULF2 Silent p.G724G 0.04 TCGA-BR-8367-01 21 11038738 11038738 C T BAGE2 RNA 0.04 TCGA-BR-8367-01 21 31062214 31062214 G A GRIK1 Silent p.L126L 0.18 TCGA-BR-8367-01 21 32638956 32638956 G A TIAM1 Silent p.S111S 0.28 TCGA-BR-8367-01 22 25130080 25130080 G A PIWIL3 Missense_Mutation p.R560W 0.06 deleterious(0) possibly_damaging(0.617) TCGA-BR-8367-01 2 125204448 125204448 G A CNTNAP5 Silent p.T284T 0.14 TCGA-BR-8367-01 2 148657057 148657072 TGAAGTATATTTTTGT CGAA ACVR2A In_Frame_Del p.V100_C103del 0.34 TCGA-BR-8367-01 2 228128561 228128561 C T COL4A3 Nonsense_Mutation p.R406* 0.39 TCGA-BR-8367-01 2 25059869 25059869 C T ADCY3 Missense_Mutation p.A527T 0.22 tolerated(0.49) benign(0) TCGA-BR-8367-01 2 43452464 43452465 - G ZFP36L2 Frame_Shift_Ins p.R160Pfs*314 0.21 TCGA-BR-8367-01 3 183772605 183772605 G A HTR3C Missense_Mutation p.R55H 0.07 deleterious(0.04) probably_damaging(0.992) TCGA-BR-8367-01 3 18390823 18390823 C T SATB1 Missense_Mutation p.G743S 0.17 tolerated(0.16) benign(0.371) TCGA-BR-8367-01 3 32582626 32582626 G A DYNC1LI1 Missense_Mutation p.A214V 0.15 tolerated(0.3) benign(0.004) TCGA-BR-8367-01 3 38812885 38812885 C A SCN10A Missense_Mutation p.V162F 0.12 deleterious(0.05) possibly_damaging(0.553) TCGA-BR-8367-01 3 9743656 9743656 G A MTMR14 Silent p.%3D 0.12 TCGA-BR-8367-01 4 110915914 110915914 G A EGF Silent p.R961R 0.22 TCGA-BR-8367-01 4 151242532 151242532 G C LRBA Intron 0.09 TCGA-BR-8367-01 4 39088222 39088222 A T KLHL5 Missense_Mutation p.N376Y 0.19 deleterious(0) probably_damaging(0.986) TCGA-BR-8367-01 4 7435637 7435637 C T PSAPL1 Missense_Mutation p.V324M 0.17 tolerated(0.14) probably_damaging(0.942) TCGA-BR-8367-01 5 130764705 130764705 T C CTC-432M15.3 Missense_Mutation p.N1607S 0.07 tolerated_low_confidence(0.69) benign(0.001) TCGA-BR-8367-01 5 131915059 131915059 A - RAD50 Frame_Shift_Del p.M140* 0.21 TCGA-BR-8367-01 5 140182227 140182227 C T PCDHA3 Missense_Mutation p.A482V 0.10 deleterious_low_confidence(0.04) benign(0.396) TCGA-BR-8367-01 5 140187213 140187213 G A PCDHA4 Silent p.P147P 0.31 TCGA-BR-8367-01 5 140753830 140753830 G A PCDHGA6 Silent p.A60A 0.11 TCGA-BR-8367-01 5 1878831 1878831 G A IRX4 Missense_Mutation p.P271L 0.21 tolerated(0.08) benign(0.079) TCGA-BR-8367-01 5 21975261 21975261 A G CDH12 Silent p.D155D 0.13 TCGA-BR-8367-01 5 32069712 32069712 G A PDZD2 Missense_Mutation p.S830N 0.19 deleterious(0.03) probably_damaging(0.998) TCGA-BR-8367-01 6 159644628 159644628 T C FNDC1 Missense_Mutation p.S279P 0.20 deleterious(0) unknown(0) TCGA-BR-8367-01 6 31599008 31599008 G A PRRC2A Missense_Mutation p.R853H 0.25 possibly_damaging(0.522) TCGA-BR-8367-01 6 33555541 33555541 G A GGNBP1 Intron 0.17 TCGA-BR-8367-01 6 70042852 70042852 T G BAI3 Missense_Mutation p.L1047R 0.12 deleterious(0) probably_damaging(0.999) TCGA-BR-8367-01 8 24333950 24333950 G A ADAM7 Missense_Mutation p.R213H 0.13 tolerated(0.26) benign(0.063) TCGA-BR-8367-01 8 30977907 30977907 T G WRN Missense_Mutation p.V866G 0.16 deleterious(0) benign(0.279) TCGA-BR-8367-01 9 121929663 121929663 A T BRINP1 Missense_Mutation p.L662Q 0.15 deleterious(0) possibly_damaging(0.502) TCGA-BR-8367-01 9 130439015 130439015 G A STXBP1 Missense_Mutation p.V448M 0.19 deleterious(0.01) benign(0.044) TCGA-BR-8367-01 9 138830109 138830109 G A UBAC1 Missense_Mutation p.P354L 0.09 deleterious(0) probably_damaging(1) TCGA-BR-8368-01 10 100022589 100022589 G A LOXL4 Missense_Mutation p.A63V 0.48 deleterious(0.01) benign(0.102) TCGA-BR-8368-01 10 102505937 102505937 T - PAX2 5'UTR 0.27 TCGA-BR-8368-01 10 104233735 104233735 G A TMEM180 Silent p.P419P 0.24 TCGA-BR-8368-01 10 104572451 104572451 A T WBP1L Missense_Mutation p.Q152L 0.36 deleterious(0.02) possibly_damaging(0.72) TCGA-BR-8368-01 10 106899179 106899179 T C SORCS3 Missense_Mutation p.Y413H 0.27 tolerated(0.16) possibly_damaging(0.488) TCGA-BR-8368-01 10 112361533 112361533 G A SMC3 Missense_Mutation p.R928Q 0.16 deleterious(0.01) benign(0.274) TCGA-BR-8368-01 10 116203811 116203811 C T ABLIM1 Missense_Mutation p.R637H 0.30 tolerated(0.14) possibly_damaging(0.512) TCGA-BR-8368-01 10 120353838 120353838 C T PRLHR Missense_Mutation p.A307T 0.10 deleterious(0.02) possibly_damaging(0.905) TCGA-BR-8368-01 10 121338303 121338303 C - TIAL1 Frame_Shift_Del p.G181Vfs*28 0.14 TCGA-BR-8368-01 10 121431767 121431767 C T BAG3 Missense_Mutation p.R170W 0.35 deleterious(0) probably_damaging(0.983) TCGA-BR-8368-01 10 121607133 121607133 A G MCMBP Silent p.N273N 0.45 TCGA-BR-8368-01 10 124172489 124172489 T C PLEKHA1 Silent p.G132G 0.14 TCGA-BR-8368-01 10 124711510 124711510 T - C10orf88 Frame_Shift_Del p.N134Ifs*2 0.37 TCGA-BR-8368-01 10 124753241 124753241 A - IKZF5 3'UTR 0.39 TCGA-BR-8368-01 10 127787041 127787041 C A ADAM12 Missense_Mutation p.G317C 0.17 deleterious(0) probably_damaging(1) TCGA-BR-8368-01 10 128904520 128904520 C T DOCK1 Missense_Mutation p.T803M 0.50 deleterious(0.02) possibly_damaging(0.791) TCGA-BR-8368-01 10 129901620 129901620 T C MKI67 Silent p.S2828S 0.37 TCGA-BR-8368-01 10 135044804 135044804 C T UTF1 Missense_Mutation p.P295L 0.45 deleterious_low_confidence(0) possibly_damaging(0.726) TCGA-BR-8368-01 10 17113854 17113854 T - CUBN Frame_Shift_Del p.A807Lfs*15 0.31 TCGA-BR-8368-01 10 24831889 24831889 A C KIAA1217 Silent p.S1230S 0.10 TCGA-BR-8368-01 10 24873307 24873307 T - ARHGAP21 3'UTR 0.27 TCGA-BR-8368-01 10 24874300 24874300 C T ARHGAP21 Missense_Mutation p.E1640K 0.29 deleterious(0) benign(0.247) TCGA-BR-8368-01 10 25464572 25464572 G T GPR158 Missense_Mutation p.A75S 0.39 tolerated(0.36) benign(0.01) TCGA-BR-8368-01 10 29891217 29891217 T C SVIL Intron 0.26 TCGA-BR-8368-01 10 33475257 33475257 C T NRP1 Missense_Mutation p.R741H 0.34 deleterious(0.01) benign(0.114) TCGA-BR-8368-01 10 45496243 45496243 G - C10orf25 Frame_Shift_Del p.P22Qfs*25 0.23 TCGA-BR-8368-01 10 46321485 46321485 C T AGAP4 Missense_Mutation p.G624R 0.69 tolerated(0.06) probably_damaging(0.988) TCGA-BR-8368-01 10 4889693 4889694 AA - AKR1E2 Frame_Shift_Del p.K312Rfs*30 0.09 TCGA-BR-8368-01 10 49613018 49613019 - A MAPK8 Frame_Shift_Ins p.N84Kfs*43 0.27 TCGA-BR-8368-01 10 52596039 52596039 C T A1CF Silent p.V141V 0.34 TCGA-BR-8368-01 10 55581491 55581491 A - PCDH15 3'UTR 0.41 TCGA-BR-8368-01 10 60588642 60588642 C T BICC1 Silent p.G972G 0.31 TCGA-BR-8368-01 10 61574410 61574410 C T CCDC6 Missense_Mutation p.R229Q 0.43 deleterious(0) probably_damaging(0.991) TCGA-BR-8368-01 10 61665913 61665915 CTC - CCDC6 In_Frame_Del p.E90del 0.46 TCGA-BR-8368-01 10 61965576 61965576 C T ANK3 Missense_Mutation p.G423S 0.34 probably_damaging(0.996) TCGA-BR-8368-01 10 70136913 70136913 T - RUFY2 Intron 0.55 TCGA-BR-8368-01 10 70446283 70446284 - A TET1 Frame_Shift_Ins p.R1744Kfs*26 0.37 TCGA-BR-8368-01 10 71128991 71128991 A G HK1 Splice_Site p.X202_splice 0.30 TCGA-BR-8368-01 10 73767317 73767317 G - CHST3 Frame_Shift_Del p.G178Afs*38 0.47 TCGA-BR-8368-01 10 73848012 73848012 G A SPOCK2 Silent p.D25D 0.16 TCGA-BR-8368-01 10 7657997 7657997 A G ITIH5 Missense_Mutation p.V296A 0.27 deleterious(0) probably_damaging(0.934) TCGA-BR-8368-01 10 8005989 8005989 T C TAF3 Silent p.D172D 0.23 TCGA-BR-8368-01 10 8100708 8100708 G A GATA3 Missense_Mutation p.E228K 0.26 deleterious(0.04) benign(0.378) TCGA-BR-8368-01 10 88912390 88912390 A - FAM35A Frame_Shift_Del p.T429Hfs*3 0.20 TCGA-BR-8368-01 10 890939 890939 T - LARP4B Frame_Shift_Del p.T163Hfs*47 0.27 TCGA-BR-8368-01 10 89574373 89574373 A - ATAD1 Intron 0.38 TCGA-BR-8368-01 10 89717770 89717770 A - PTEN Frame_Shift_Del p.K267Rfs*9 0.28 TCGA-BR-8368-01 10 91163033 91163033 A - IFIT1 Frame_Shift_Del p.K336Sfs*9 0.32 TCGA-BR-8368-01 10 93579766 93579766 C A TNKS2 Missense_Mutation p.A235D 0.05 deleterious(0) possibly_damaging(0.84) TCGA-BR-8368-01 10 93719750 93719750 C T BTAF1 Missense_Mutation p.R368C 0.33 deleterious(0) probably_damaging(1) TCGA-BR-8368-01 10 98469729 98469729 C A PIK3AP1 Nonsense_Mutation p.G9* 0.31 TCGA-BR-8368-01 11 106681137 106681137 G A GUCY1A2 Missense_Mutation p.P425L 0.11 deleterious(0) probably_damaging(0.996) TCGA-BR-8368-01 11 108178656 108178656 A - ATM Frame_Shift_Del p.K1904Nfs*13 0.28 TCGA-BR-8368-01 11 113073168 113073168 A G NCAM1 Silent p.L99L 0.43 TCGA-BR-8368-01 11 115102133 115102133 C T CADM1 Missense_Mutation p.A168T 0.30 tolerated(0.63) possibly_damaging(0.474) TCGA-BR-8368-01 11 116657771 116657771 A G ZNF259 Missense_Mutation p.M113T 0.04 deleterious(0) possibly_damaging(0.481) TCGA-BR-8368-01 11 116660973 116660973 G A APOA5 Silent p.F324F 0.24 TCGA-BR-8368-01 11 117152789 117152789 C A RNF214 Silent p.G505G 0.35 TCGA-BR-8368-01 11 119042071 119042071 A G NLRX1 5'UTR 0.19 TCGA-BR-8368-01 11 119053036 119053036 C A NLRX1 Missense_Mutation p.P863H 0.18 deleterious(0) probably_damaging(0.959) TCGA-BR-8368-01 11 119210226 119210226 C T C1QTNF5 Missense_Mutation p.G183R 0.36 tolerated(0.17) probably_damaging(1) TCGA-BR-8368-01 11 119243941 119243941 C T USP2 Missense_Mutation p.D84N 0.37 deleterious_low_confidence(0) benign(0.372) TCGA-BR-8368-01 11 121367679 121367679 G A SORL1 Missense_Mutation p.R287Q 0.32 tolerated(0.18) benign(0.003) TCGA-BR-8368-01 11 122849972 122849972 C T BSX Silent p.T152T 0.32 TCGA-BR-8368-01 11 12785940 12785940 G A TEAD1 Missense_Mutation p.G54E 0.09 deleterious(0) probably_damaging(0.998) TCGA-BR-8368-01 11 130078396 130078396 C T ST14 Missense_Mutation p.R696C 0.30 deleterious(0) probably_damaging(0.962) TCGA-BR-8368-01 11 132399028 132399028 G A OPCML Silent p.S151S 0.27 TCGA-BR-8368-01 11 14501184 14501184 C T COPB1 Missense_Mutation p.R430H 0.36 deleterious(0.01) possibly_damaging(0.893) TCGA-BR-8368-01 11 17741315 17741315 C T MYOD1 5'UTR 0.43 TCGA-BR-8368-01 11 1778593 1778593 T C CTSD Missense_Mutation p.K222R 0.32 tolerated(0.13) benign(0.294) TCGA-BR-8368-01 11 18418442 18418442 C - LDHA Frame_Shift_Del p.Q49Rfs*21 0.29 TCGA-BR-8368-01 11 18638500 18638501 - T SPTY2D1 Frame_Shift_Ins p.D33Rfs*5 0.31 TCGA-BR-8368-01 11 20676537 20676537 G A SLC6A5 3'UTR 0.38 TCGA-BR-8368-01 11 24998139 24998139 G A LUZP2 Silent p.A175A 0.38 TCGA-BR-8368-01 11 3115027 3115027 C T OSBPL5 Silent p.S586S 0.32 TCGA-BR-8368-01 11 31327259 31327259 G A DCDC1 Silent p.D219D 0.38 TCGA-BR-8368-01 11 33373380 33373380 G A HIPK3 Missense_Mutation p.A1012T 0.18 tolerated(0.34) benign(0.001) TCGA-BR-8368-01 11 379551 379551 C T B4GALNT4 Missense_Mutation p.R780W 0.56 deleterious(0.01) unknown(0) TCGA-BR-8368-01 11 44331484 44331484 G A ALX4 Silent p.F43F 0.54 TCGA-BR-8368-01 11 46907918 46907918 A G LRP4 Silent p.T794T 0.31 TCGA-BR-8368-01 11 47598987 47598987 G A KBTBD4 Missense_Mutation p.R205C 0.26 tolerated(0.08) benign(0.001) TCGA-BR-8368-01 11 5510100 5510100 A G OR52D1 Missense_Mutation p.D55G 0.20 deleterious(0) benign(0.146) TCGA-BR-8368-01 11 55579083 55579083 A G OR5L1 Silent p.A47A 0.38 TCGA-BR-8368-01 11 55653610 55653610 A - TRIM51 Frame_Shift_Del p.M144Cfs*15 0.36 TCGA-BR-8368-01 11 55861366 55861366 G A OR8I2 Missense_Mutation p.E195K 0.26 deleterious(0.04) possibly_damaging(0.738) TCGA-BR-8368-01 11 57004507 57004507 G T APLNR 5'UTR 0.36 TCGA-BR-8368-01 11 57472193 57472193 G - MED19 Frame_Shift_Del p.P190Qfs*18 0.16 TCGA-BR-8368-01 11 5878805 5878805 A G OR52E8 Missense_Mutation p.V43A 0.04 deleterious(0.05) benign(0.097) TCGA-BR-8368-01 11 58949756 58949756 C T DTX4 Silent p.T252T 0.36 TCGA-BR-8368-01 11 605238 605238 G A PHRF1 Silent p.A424A 0.23 TCGA-BR-8368-01 11 62291883 62291883 C T AHNAK Missense_Mutation p.V3336I 0.38 benign(0.002) TCGA-BR-8368-01 11 62343652 62343652 G T TUT1 Silent p.S551S 0.29 TCGA-BR-8368-01 11 62445075 62445075 G - UBXN1 Frame_Shift_Del p.P189Qfs*38 0.27 TCGA-BR-8368-01 11 6340571 6340571 G A PRKCDBP Missense_Mutation p.P203L 0.37 tolerated(0.15) benign(0.001) TCGA-BR-8368-01 11 64012174 64012174 G - PPP1R14B 3'UTR 0.24 TCGA-BR-8368-01 11 64410147 64410147 C A NRXN2 Intron 0.62 TCGA-BR-8368-01 11 6461701 6461701 A - HPX Frame_Shift_Del p.F70Lfs*16 0.35 TCGA-BR-8368-01 11 64681811 64681811 T C ATG2A Silent p.P111P 0.56 TCGA-BR-8368-01 11 64699315 64699315 G A PPP2R5B Missense_Mutation p.R364H 0.32 deleterious(0) benign(0.342) TCGA-BR-8368-01 11 64888411 64888411 A - FAU Intron 0.29 TCGA-BR-8368-01 11 65124699 65124699 C T TIGD3 3'UTR 0.14 TCGA-BR-8368-01 11 65637701 65637701 G A EFEMP2 Silent p.D166D 0.43 TCGA-BR-8368-01 11 66999252 66999252 C T KDM2A Missense_Mutation p.H434Y 0.26 tolerated(0.49) benign(0.015) TCGA-BR-8368-01 11 67066574 67066575 TG - ANKRD13D Frame_Shift_Del p.V260* 0.26 TCGA-BR-8368-01 11 67076990 67076990 C T SSH3 Missense_Mutation p.T395M 0.30 deleterious(0) probably_damaging(0.999) TCGA-BR-8368-01 11 67132594 67132596 AGA - CLCF1 3'UTR 0.30 TCGA-BR-8368-01 11 674759 674759 G A DEAF1 Missense_Mutation p.A427V 0.36 tolerated(0.17) benign(0.439) TCGA-BR-8368-01 11 68579964 68579964 G A CPT1A Silent p.Y74Y 0.40 TCGA-BR-8368-01 11 72945613 72945613 C T P2RY2 Nonsense_Mutation p.R137* 0.10 TCGA-BR-8368-01 11 73021526 73021527 - C ARHGEF17 Frame_Shift_Ins p.G618Wfs*4 0.21 TCGA-BR-8368-01 11 73073593 73073593 C T ARHGEF17 Missense_Mutation p.P1604S 0.26 tolerated(0.19) benign(0.003) TCGA-BR-8368-01 11 73760408 73760408 G A C2CD3 Missense_Mutation p.R1779C 0.28 tolerated(0.07) benign(0.033) TCGA-BR-8368-01 11 802748 802748 C T PIDD Missense_Mutation p.A285T 0.40 tolerated(0.39) benign(0.053) TCGA-BR-8368-01 11 83673939 83673939 G A DLG2 Silent p.D443D 0.32 TCGA-BR-8368-01 11 84996295 84996295 G A DLG2 Missense_Mutation p.P52L 0.27 tolerated_low_confidence(0.17) benign(0) TCGA-BR-8368-01 11 85468672 85468673 CT - SYTL2 Frame_Shift_Del p.R32Sfs*6 0.13 TCGA-BR-8368-01 11 86662986 86662986 A G FZD4 Missense_Mutation p.V271A 0.38 tolerated(0.11) benign(0.07) TCGA-BR-8368-01 11 92257897 92257897 C A FAT3 Silent p.S1130S 0.52 TCGA-BR-8368-01 11 93463528 93463528 C A KIAA1731 3'Flank 0.21 TCGA-BR-8368-01 11 93912967 93912967 A G PANX1 Missense_Mutation p.K249E 0.41 deleterious(0) possibly_damaging(0.755) TCGA-BR-8368-01 12 10010106 10010106 G A CLEC2B Silent p.A68A 0.11 TCGA-BR-8368-01 12 100551024 100551024 G A AC010203.1 3'Flank 0.37 TCGA-BR-8368-01 12 100774560 100774560 C - SLC17A8 Frame_Shift_Del p.P63Hfs*19 0.21 TCGA-BR-8368-01 12 102161840 102161840 G A GNPTAB Silent p.C461C 0.25 TCGA-BR-8368-01 12 105198855 105198855 A G SLC41A2 3'UTR 0.33 TCGA-BR-8368-01 12 109637206 109637206 G A ACACB Splice_Site p.X876_splice 0.17 TCGA-BR-8368-01 12 110246248 110246248 G T TRPV4 Missense_Mutation p.P138T 0.49 tolerated(0.26) benign(0.15) TCGA-BR-8368-01 12 110873942 110873942 G A ARPC3 Silent p.F149F 0.35 TCGA-BR-8368-01 12 111758076 111758076 G A CUX2 Missense_Mutation p.A755T 0.29 tolerated(0.75) benign(0) TCGA-BR-8368-01 12 111893938 111893938 C T ATXN2 Silent p.S1213S 0.09 TCGA-BR-8368-01 12 118480755 118480755 G A WSB2 Silent p.S150S 0.28 TCGA-BR-8368-01 12 122079195 122079195 G A ORAI1 Silent p.T186T 0.32 TCGA-BR-8368-01 12 122667814 122667814 C T LRRC43 Silent p.R41R 0.44 TCGA-BR-8368-01 12 123444231 123444231 G A ABCB9 Silent p.D184D 0.33 TCGA-BR-8368-01 12 123805034 123805034 G - SBNO1 Frame_Shift_Del p.P871Lfs*20 0.27 TCGA-BR-8368-01 12 124359795 124359795 G A DNAH10 Silent p.T2534T 0.19 TCGA-BR-8368-01 12 12630269 12630269 A G DUSP16 Missense_Mutation p.L499P 0.38 tolerated(0.21) benign(0) TCGA-BR-8368-01 12 132547129 132547129 G A EP400 Silent p.Q2739Q 0.11 TCGA-BR-8368-01 12 132625024 132625024 G A DDX51 Silent p.Y539Y 0.29 TCGA-BR-8368-01 12 133360753 133360753 G A GOLGA3 Silent p.D1088D 0.43 TCGA-BR-8368-01 12 25398281 25398281 C T KRAS Missense_Mutation p.G13D 0.32 deleterious(0.04) possibly_damaging(0.506) TCGA-BR-8368-01 12 27077371 27077371 G A ASUN Missense_Mutation p.R241W 0.33 deleterious(0) possibly_damaging(0.766) TCGA-BR-8368-01 12 27113541 27113541 C T FGFR1OP2 Missense_Mutation p.H164Y 0.16 tolerated_low_confidence(0.37) benign(0.068) TCGA-BR-8368-01 12 2714868 2714868 C T CACNA1C Silent p.V1044V 0.42 TCGA-BR-8368-01 12 27908477 27908478 - T MRPS35 3'UTR 0.28 TCGA-BR-8368-01 12 2797835 2797835 G - CACNA1C Frame_Shift_Del p.G2052Afs*38 0.30 TCGA-BR-8368-01 12 31435566 31435609 AGAGGGTCAGTTTGTAGCTTTGTGGTTTTTCAAAATTCAGATAT GAGGGGCAGTTTGTAGCTTTGTGGTTTTTCAAAATTCAGATA FAM60A 3'UTR 0.13 TCGA-BR-8368-01 12 31632813 31632813 T C DENND5B Missense_Mutation p.K205R 0.46 tolerated(1) benign(0.009) TCGA-BR-8368-01 12 32481022 32481022 C T BICD1 Missense_Mutation p.R545C 0.31 deleterious(0) probably_damaging(0.99) TCGA-BR-8368-01 12 3678670 3678670 C T PRMT8 Missense_Mutation p.R218W 0.36 deleterious(0) probably_damaging(0.996) TCGA-BR-8368-01 12 38715038 38715038 A - ALG10B 3'UTR 0.30 TCGA-BR-8368-01 12 40657646 40657647 - A LRRK2 Frame_Shift_Ins p.Q536Tfs*6 0.25 TCGA-BR-8368-01 12 47471413 47471413 C T AMIGO2 Missense_Mutation p.R458Q 0.30 tolerated(0.25) possibly_damaging(0.59) TCGA-BR-8368-01 12 48378832 48378832 C A COL2A1 Missense_Mutation p.Q593H 0.29 benign(0.264) TCGA-BR-8368-01 12 49391527 49391529 CTC - DDN In_Frame_Del p.G377del 0.24 TCGA-BR-8368-01 12 49418643 49418643 C T KMT2D Missense_Mutation p.E5291K 0.45 unknown(0) TCGA-BR-8368-01 12 49491882 49491882 G A LMBR1L Missense_Mutation p.T416I 0.32 deleterious(0) probably_damaging(0.998) TCGA-BR-8368-01 12 49717805 49717805 C - TROAP Frame_Shift_Del p.P109Lfs*10 0.17 TCGA-BR-8368-01 12 51138528 51138528 C T DIP2B Missense_Mutation p.P1546L 0.33 deleterious(0) probably_damaging(0.999) TCGA-BR-8368-01 12 5154173 5154173 C T KCNA5 Missense_Mutation p.A287V 0.32 tolerated(0.66) benign(0.001) TCGA-BR-8368-01 12 53346434 53346434 T C KRT18 Intron 0.38 TCGA-BR-8368-01 12 54349039 54349039 G A HOXC12 Missense_Mutation p.R109H 0.50 tolerated(0.21) possibly_damaging(0.732) TCGA-BR-8368-01 12 55356642 55356642 G - TESPA1 Frame_Shift_Del p.P347Lfs*30 0.29 TCGA-BR-8368-01 12 56142524 56142524 A - GDF11 Frame_Shift_Del p.K201Nfs*3 0.24 TCGA-BR-8368-01 12 56536156 56536156 T C ESYT1 Missense_Mutation p.W904R 0.44 tolerated(1) probably_damaging(0.966) TCGA-BR-8368-01 12 56847528 56847528 C T MIP Silent p.A124A 0.60 TCGA-BR-8368-01 12 57106238 57106241 TTTA - NACA 3'UTR 0.31 TCGA-BR-8368-01 12 57114418 57114418 G - NACA Frame_Shift_Del p.P299Qfs*25 0.29 TCGA-BR-8368-01 12 57869329 57869329 C T ARHGAP9 Missense_Mutation p.E461K 0.47 tolerated(0.07) benign(0.439) TCGA-BR-8368-01 12 58122063 58122063 C T AGAP2-AS1 3'UTR 0.32 TCGA-BR-8368-01 12 6421413 6421413 A C PLEKHG6 Silent p.P7P 0.29 TCGA-BR-8368-01 12 6660145 6660145 G A IFFO1 Missense_Mutation p.R266W 0.42 deleterious(0) probably_damaging(0.996) TCGA-BR-8368-01 12 66788080 66788080 G A GRIP1 Silent p.Y627Y 0.30 TCGA-BR-8368-01 12 6923379 6923379 A G CD4 Missense_Mutation p.I96V 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-BR-8368-01 12 70948992 70948992 G A PTPRB Silent p.S1697S 0.46 TCGA-BR-8368-01 12 7244123 7244123 C A C1R Silent p.T51T 0.27 TCGA-BR-8368-01 12 91348087 91348087 G A CCER1 Missense_Mutation p.R145C 0.22 deleterious(0) probably_damaging(0.942) TCGA-BR-8368-01 12 98941748 98941748 A C TMPO 3'UTR 0.41 TCGA-BR-8368-01 12 9994990 9994990 T C KLRF1 Missense_Mutation p.M183T 0.36 tolerated(0.11) benign(0.003) TCGA-BR-8368-01 13 100953844 100953844 G A PCCA Missense_Mutation p.R399Q 0.36 deleterious(0) probably_damaging(1) TCGA-BR-8368-01 13 109661393 109661393 T C MYO16 Missense_Mutation p.F842S 0.30 deleterious(0.03) probably_damaging(0.983) TCGA-BR-8368-01 13 113795330 113795330 C A F10 Silent p.T156T 0.29 TCGA-BR-8368-01 13 114202753 114202753 G A TMCO3 Missense_Mutation p.V636I 0.41 tolerated(1) benign(0.001) TCGA-BR-8368-01 13 115028389 115028389 C T CDC16 Missense_Mutation p.A471V 0.36 deleterious(0) probably_damaging(1) TCGA-BR-8368-01 13 21358038 21358038 G A XPO4 Silent p.V1093V 0.34 TCGA-BR-8368-01 13 25670801 25670802 - A PABPC3 Frame_Shift_Ins p.M158Nfs*17 0.34 TCGA-BR-8368-01 13 28197426 28197426 T C POLR1D 3'UTR 0.26 TCGA-BR-8368-01 13 28855473 28855473 T A PAN3 Missense_Mutation p.F781I 0.33 deleterious(0.02) possibly_damaging(0.557) TCGA-BR-8368-01 13 29291959 29291959 A - SLC46A3 Frame_Shift_Del p.F59Lfs*20 0.28 TCGA-BR-8368-01 13 30091766 30091766 T - SLC7A1 Frame_Shift_Del p.N485Tfs*10 0.25 TCGA-BR-8368-01 13 32907421 32907421 A - BRCA2 Frame_Shift_Del p.I605Yfs*9 0.31 TCGA-BR-8368-01 13 36202305 36202305 C T NBEA Missense_Mutation p.R2513C 0.38 deleterious(0) probably_damaging(0.994) TCGA-BR-8368-01 13 39448644 39448644 C T FREM2 Silent p.R2734R 0.36 TCGA-BR-8368-01 13 42874908 42874908 T G AKAP11 Missense_Mutation p.C676G 0.13 tolerated(0.35) benign(0.005) TCGA-BR-8368-01 13 49795274 49795274 C T MLNR Silent p.Y267Y 0.43 TCGA-BR-8368-01 13 50065970 50065970 A - SETDB2 Frame_Shift_Del p.I718Yfs*11 0.33 TCGA-BR-8368-01 13 58208087 58208087 G A PCDH17 Silent p.P469P 0.34 TCGA-BR-8368-01 13 67802376 67802376 A C PCDH9 Missense_Mutation p.L66R 0.29 deleterious(0) probably_damaging(0.997) TCGA-BR-8368-01 13 75869048 75869048 G - TBC1D4 Frame_Shift_Del p.W1087Gfs*12 0.23 TCGA-BR-8368-01 13 77672167 77672167 T C MYCBP2 Missense_Mutation p.H3003R 0.42 probably_damaging(0.962) TCGA-BR-8368-01 13 77755995 77755995 A T MYCBP2 Silent p.A1556A 0.34 TCGA-BR-8368-01 13 92560303 92560303 G C GPC5 Missense_Mutation p.V465L 0.33 deleterious(0.05) possibly_damaging(0.517) TCGA-BR-8368-01 13 95735432 95735432 A - ABCC4 Frame_Shift_Del p.L883Wfs*7 0.29 TCGA-BR-8368-01 14 102368059 102368059 G A PPP2R5C Missense_Mutation p.V317M 0.38 tolerated(0.06) benign(0.443) TCGA-BR-8368-01 14 105478029 105478029 G A CDCA4 Missense_Mutation p.R80C 0.44 tolerated(0.14) benign(0.032) TCGA-BR-8368-01 14 20296108 20296108 T - OR4N2 Frame_Shift_Del p.C169Vfs*30 0.20 TCGA-BR-8368-01 14 20822321 20822321 G T PARP2 Missense_Mutation p.Q239H 0.32 deleterious(0) probably_damaging(0.99) TCGA-BR-8368-01 14 20851686 20851686 C T TEP1 Silent p.G1276G 0.25 TCGA-BR-8368-01 14 22192114 22192114 C T TRAV3 5'UTR 0.33 TCGA-BR-8368-01 14 23495375 23495375 G A PSMB5 Missense_Mutation p.R239W 0.35 tolerated(0.05) possibly_damaging(0.505) TCGA-BR-8368-01 14 23855198 23855198 C T MYH6 Missense_Mutation p.R1701Q 0.46 deleterious(0) possibly_damaging(0.905) TCGA-BR-8368-01 14 24045100 24045100 G A JPH4 Silent p.H315H 0.23 TCGA-BR-8368-01 14 24882594 24882594 C T NYNRIN Silent p.T939T 0.50 TCGA-BR-8368-01 14 24898055 24898055 G - CBLN3 Frame_Shift_Del p.P69Lfs*35 0.27 TCGA-BR-8368-01 14 31574621 31574621 G A HECTD1 Missense_Mutation p.T2456M 0.26 tolerated(0.08) possibly_damaging(0.873) TCGA-BR-8368-01 14 31613392 31613392 C A HECTD1 Missense_Mutation p.K901N 0.34 tolerated(0.56) benign(0.039) TCGA-BR-8368-01 14 32562545 32562545 T - ARHGAP5 Frame_Shift_Del p.F892Lfs*9 0.44 TCGA-BR-8368-01 14 35183771 35183771 G A CFL2 5'Flank 0.44 TCGA-BR-8368-01 14 36003563 36003563 G A INSM2 Silent p.P35P 0.28 TCGA-BR-8368-01 14 36003662 36003662 G A INSM2 Silent p.A68A 0.44 TCGA-BR-8368-01 14 36155847 36155847 T - RALGAPA1 Frame_Shift_Del p.K820Nfs*19 0.23 TCGA-BR-8368-01 14 36334967 36334967 C T BRMS1L Missense_Mutation p.P243S 0.46 tolerated(0.92) benign(0.001) TCGA-BR-8368-01 14 37145597 37145597 G A PAX9 Silent p.A322A 0.14 TCGA-BR-8368-01 14 51239111 51239113 AGG - NIN In_Frame_Del p.S296del 0.26 TCGA-BR-8368-01 14 55169148 55169148 G T SAMD4A Missense_Mutation p.G189W 0.09 deleterious(0) probably_damaging(0.998) TCGA-BR-8368-01 14 56101252 56101252 C T KTN1 Missense_Mutation p.A446V 0.33 deleterious(0) probably_damaging(0.913) TCGA-BR-8368-01 14 58814451 58814451 A - ARID4A Frame_Shift_Del p.D423Tfs*2 0.39 TCGA-BR-8368-01 14 59931390 59931390 G A GPR135 Silent p.A185A 0.47 TCGA-BR-8368-01 14 64653226 64653226 G A SYNE2 Missense_Mutation p.V5881M 0.37 possibly_damaging(0.817) TCGA-BR-8368-01 14 65239523 65239523 G A SPTB Silent p.N1776N 0.46 TCGA-BR-8368-01 14 65543322 65543322 C T MAX Missense_Mutation p.D119N 0.33 tolerated(0.07) benign(0.083) TCGA-BR-8368-01 14 67664853 67664853 T - FAM71D Intron 0.24 TCGA-BR-8368-01 14 68045999 68045999 C A PLEKHH1 Missense_Mutation p.P1000T 0.33 deleterious(0) probably_damaging(0.94) TCGA-BR-8368-01 14 69818886 69818886 C T GALNT16 Intron 0.30 TCGA-BR-8368-01 14 71555941 71555941 C T PCNX Missense_Mutation p.A1824V 0.40 deleterious(0) probably_damaging(0.999) TCGA-BR-8368-01 14 72117105 72117105 T C SIPA1L1 Silent p.T624T 0.12 TCGA-BR-8368-01 14 72976908 72976908 G A RGS6 Missense_Mutation p.D338N 0.37 tolerated(0.11) benign(0.006) TCGA-BR-8368-01 14 73717689 73717689 G A PAPLN Silent p.T180T 0.33 TCGA-BR-8368-01 14 74824474 74824474 G A VRTN Missense_Mutation p.V330M 0.33 tolerated(0.26) benign(0.04) TCGA-BR-8368-01 14 75230471 75230471 G - YLPM1 Frame_Shift_Del p.G95Afs*124 0.44 TCGA-BR-8368-01 14 75376598 75376598 G A RPS6KL1 Silent p.P306P 0.38 TCGA-BR-8368-01 14 77743696 77743696 A G POMT2 3'UTR 0.46 TCGA-BR-8368-01 14 78187146 78187146 G A SNW1 Missense_Mutation p.R386W 0.29 deleterious(0) probably_damaging(0.992) TCGA-BR-8368-01 14 79432736 79432736 G A NRXN3 Missense_Mutation p.E549K 0.33 deleterious(0) probably_damaging(0.927) TCGA-BR-8368-01 14 80963839 80963840 - T CEP128 Frame_Shift_Ins p.E1090Rfs*11 0.33 TCGA-BR-8368-01 14 89181530 89181530 C T EML5 Silent p.T399T 0.24 TCGA-BR-8368-01 14 91366489 91366489 T - RPS6KA5 Frame_Shift_Del p.S448Vfs*9 0.21 TCGA-BR-8368-01 14 91444703 91444703 A - RPS6KA5 Frame_Shift_Del p.L114Wfs*2 0.27 TCGA-BR-8368-01 14 92472698 92472698 T - TRIP11 Frame_Shift_Del p.K541Rfs*17 0.29 TCGA-BR-8368-01 14 94046501 94046501 T C UNC79 Silent p.L637L 0.31 TCGA-BR-8368-01 14 94776185 94776185 C T SERPINA6 Missense_Mutation p.V258M 0.31 tolerated(0.16) benign(0.011) TCGA-BR-8368-01 14 97002284 97002284 G A PAPOLA Silent p.T326T 0.40 TCGA-BR-8368-01 15 20642613 20642613 C T HERC2P3 RNA 0.13 TCGA-BR-8368-01 15 22332413 22332413 A - RP11-69H14.6 RNA 0.27 TCGA-BR-8368-01 15 22332594 22332594 T - RP11-69H14.6 RNA 0.11 TCGA-BR-8368-01 15 22956283 22956283 G A CYFIP1 Intron 0.29 TCGA-BR-8368-01 15 24921893 24921893 G T NPAP1 Silent p.P293P 0.29 TCGA-BR-8368-01 15 28437133 28437133 A C HERC2 Missense_Mutation p.W2809G 0.18 possibly_damaging(0.696) TCGA-BR-8368-01 15 29993712 29993712 A - TJP1 3'UTR 0.47 TCGA-BR-8368-01 15 31222835 31222835 C T FAN1 Silent p.P959P 0.30 TCGA-BR-8368-01 15 40512803 40512803 G A BUB1B Missense_Mutation p.R999Q 0.09 tolerated(0.07) benign(0.053) TCGA-BR-8368-01 15 41191563 41191563 G A VPS18 Missense_Mutation p.G183S 0.35 tolerated(0.82) benign(0.003) TCGA-BR-8368-01 15 45392015 45392015 G A DUOX2 Missense_Mutation p.A1087V 0.42 deleterious(0) probably_damaging(0.999) TCGA-BR-8368-01 15 45545493 45545493 T C SLC28A2 Missense_Mutation p.M27T 0.32 tolerated(0.45) benign(0) TCGA-BR-8368-01 15 48936960 48936960 G A FBN1 Nonsense_Mutation p.R3* 0.34 TCGA-BR-8368-01 15 49776644 49776644 A - FGF7 Frame_Shift_Del p.T179Rfs*15 0.24 TCGA-BR-8368-01 15 50885864 50885864 A G TRPM7 Silent p.D1186D 0.27 TCGA-BR-8368-01 15 55841125 55841125 G A PYGO1 Missense_Mutation p.R40C 0.28 tolerated(0.07) probably_damaging(0.996) TCGA-BR-8368-01 15 56735891 56735893 TCT - MNS1 In_Frame_Del p.E282del 0.34 TCGA-BR-8368-01 15 59185211 59185211 T - SLTM Frame_Shift_Del p.R595Efs*16 0.32 TCGA-BR-8368-01 15 59499250 59499250 G A LDHAL6B Silent p.P37P 0.07 TCGA-BR-8368-01 15 63950763 63950763 C T HERC1 Silent p.A3193A 0.33 TCGA-BR-8368-01 15 64499785 64499785 G A CSNK1G1 Missense_Mutation p.R230W 0.26 deleterious(0) probably_damaging(1) TCGA-BR-8368-01 15 65114768 65114768 C A PIF1 Missense_Mutation p.L200F 0.25 deleterious(0.05) benign(0.426) TCGA-BR-8368-01 15 65444827 65444827 G A CLPX Silent p.I584I 0.28 TCGA-BR-8368-01 15 65863951 65863951 C T PTPLAD1 Missense_Mutation p.T280I 0.39 deleterious(0) possibly_damaging(0.857) TCGA-BR-8368-01 15 66607460 66607460 A - DIS3L Frame_Shift_Del p.N302Mfs*8 0.12 TCGA-BR-8368-01 15 66774194 66774194 G A MAP2K1 Missense_Mutation p.V224M 0.35 deleterious(0.04) possibly_damaging(0.906) TCGA-BR-8368-01 15 67782375 67782375 A G IQCH Missense_Mutation p.H945R 0.37 tolerated(0.07) benign(0.234) TCGA-BR-8368-01 15 69548149 69548149 C T GLCE Missense_Mutation p.R2C 0.27 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-BR-8368-01 15 75980690 75980690 G T CSPG4 Missense_Mutation p.L906I 0.47 tolerated(0.1) benign(0.094) TCGA-BR-8368-01 15 75981406 75981406 C T CSPG4 Missense_Mutation p.R667H 0.36 tolerated(0.56) benign(0.001) TCGA-BR-8368-01 15 76630254 76630254 C T ISL2 Missense_Mutation p.T65M 0.33 deleterious(0.02) probably_damaging(0.932) TCGA-BR-8368-01 15 77407138 77407138 T C PEAK1 Missense_Mutation p.Q1534R 0.35 tolerated(0.53) benign(0.175) TCGA-BR-8368-01 15 77771648 77771648 C T HMG20A Silent p.L345L 0.32 TCGA-BR-8368-01 15 79291158 79291158 G - RASGRF1 Frame_Shift_Del p.P935Qfs*11 0.24 TCGA-BR-8368-01 15 80137709 80137709 T C ST20-MTHFS Missense_Mutation p.Y128C 0.21 deleterious(0) probably_damaging(0.998) TCGA-BR-8368-01 15 85658682 85658682 A C PDE8A Silent p.R455R 0.40 TCGA-BR-8368-01 15 92459657 92459657 C T SLCO3A1 Silent p.H205H 0.24 TCGA-BR-8368-01 16 109078 109078 C T RHBDF1 Missense_Mutation p.R681Q 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8368-01 16 1270781 1270781 C T CACNA1H Silent p.D2283D 0.41 TCGA-BR-8368-01 16 1398109 1398109 C T BAIAP3 Silent p.A1089A 0.26 TCGA-BR-8368-01 16 15718921 15718921 G A KIAA0430 Missense_Mutation p.T688M 0.33 deleterious(0.04) benign(0.433) TCGA-BR-8368-01 16 15829334 15829334 G A MYH11 Missense_Mutation p.A1139V 0.44 benign(0.003) TCGA-BR-8368-01 16 1584316 1584316 G A TMEM204 Missense_Mutation p.A14T 0.31 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-BR-8368-01 16 16256993 16256993 C T ABCC6 Silent p.S1121S 0.31 TCGA-BR-8368-01 16 1709974 1709974 G A CRAMP1L Missense_Mutation p.V775I 0.09 tolerated(0.82) benign(0.003) TCGA-BR-8368-01 16 1866933 1866933 G T HAGH Silent p.P236P 0.21 TCGA-BR-8368-01 16 1962139 1962139 G A HS3ST6 Nonsense_Mutation p.R130* 0.53 TCGA-BR-8368-01 16 20335202 20335202 G A GP2 Silent p.C157C 0.40 TCGA-BR-8368-01 16 2333320 2333320 G A ABCA3 Missense_Mutation p.P1301L 0.40 tolerated(0.53) benign(0.036) TCGA-BR-8368-01 16 2809032 2809034 AAG - SRRM2 In_Frame_Del p.K217del 0.36 TCGA-BR-8368-01 16 28495431 28495434 AAGA - CLN3 Frame_Shift_Del p.F228Cfs*26 0.33 TCGA-BR-8368-01 16 28549505 28549505 A G NUPR1 Silent p.T46T 0.35 TCGA-BR-8368-01 16 28906225 28906225 C T ATP2A1 Missense_Mutation p.T457M 0.31 deleterious(0.04) possibly_damaging(0.901) TCGA-BR-8368-01 16 29912627 29912628 - T ASPHD1 Frame_Shift_Ins p.G113Wfs*29 0.38 TCGA-BR-8368-01 16 30004974 30004974 C T HIRIP3 Silent p.A465A 0.31 TCGA-BR-8368-01 16 3025408 3025408 C A PKMYT1 Nonsense_Mutation p.G262* 0.07 TCGA-BR-8368-01 16 30409299 30409299 G - ZNF48 Frame_Shift_Del p.E245Sfs*47 0.27 TCGA-BR-8368-01 16 30567397 30567397 C T ZNF764 Silent p.R115R 0.37 TCGA-BR-8368-01 16 3063895 3063895 G - CLDN9 Frame_Shift_Del p.L180Sfs*196 0.52 TCGA-BR-8368-01 16 3065456 3065456 C - CLDN6 Frame_Shift_Del p.S190Pfs*70 0.35 TCGA-BR-8368-01 16 33647495 33647495 C - RP11-812E19.9 Frame_Shift_Del p.S36Pfs*2 0.26 TCGA-BR-8368-01 16 3433514 3433515 - T ZSCAN32 Frame_Shift_Ins p.S266Ifs*48 0.31 TCGA-BR-8368-01 16 3594291 3594291 G A NLRC3 Missense_Mutation p.A983V 0.28 tolerated(0.07) possibly_damaging(0.684) TCGA-BR-8368-01 16 3781417 3781417 C T CREBBP Missense_Mutation p.V1650I 0.45 unknown(0) TCGA-BR-8368-01 16 4731601 4731601 G A MGRN1 Silent p.A394A 0.44 TCGA-BR-8368-01 16 48295348 48295348 G A LONP2 Missense_Mutation p.R246H 0.19 deleterious(0.03) possibly_damaging(0.466) TCGA-BR-8368-01 16 56535332 56535332 C T BBS2 Silent p.T386T 0.08 TCGA-BR-8368-01 16 57417051 57417051 G - CX3CL1 3'UTR 0.23 TCGA-BR-8368-01 16 58018678 58018678 G A TEPP Missense_Mutation p.A197T 0.25 tolerated(0.08) possibly_damaging(0.58) TCGA-BR-8368-01 16 58036445 58036445 C T USB1 Missense_Mutation p.P54L 0.33 tolerated(0.14) benign(0.005) TCGA-BR-8368-01 16 58633264 58633264 C T CNOT1 5'UTR 0.38 TCGA-BR-8368-01 16 66943236 66943236 G A CDH16 Missense_Mutation p.R776C 0.30 deleterious(0) possibly_damaging(0.847) TCGA-BR-8368-01 16 67237066 67237066 C T ELMO3 Nonsense_Mutation p.Q627* 0.25 TCGA-BR-8368-01 16 67579579 67579579 G A FAM65A Missense_Mutation p.R1088Q 0.43 tolerated(1) benign(0.238) TCGA-BR-8368-01 16 67579655 67579655 C T FAM65A Silent p.D1113D 0.35 TCGA-BR-8368-01 16 67860159 67860159 C T TSNAXIP1 Missense_Mutation p.R363W 0.32 deleterious(0.01) probably_damaging(0.99) TCGA-BR-8368-01 16 67963726 67963726 G A CTRL 3'UTR 0.28 TCGA-BR-8368-01 16 68057092 68057092 C T DDX28 Missense_Mutation p.R5Q 0.44 tolerated_low_confidence(0.06) benign(0.177) TCGA-BR-8368-01 16 683442 683442 C T WFIKKN1 Silent p.Y344Y 0.62 TCGA-BR-8368-01 16 68405944 68405944 C T SMPD3 Silent p.Q47Q 0.21 TCGA-BR-8368-01 16 70295027 70295027 G A AARS Nonsense_Mutation p.R569* 0.34 TCGA-BR-8368-01 16 70349837 70349838 - T DDX19B Intron 0.26 TCGA-BR-8368-01 16 70599405 70599405 A - SF3B3 Frame_Shift_Del p.K936Nfs*25 0.16 TCGA-BR-8368-01 16 70866938 70866938 T C HYDIN Missense_Mutation p.H4571R 0.27 possibly_damaging(0.702) TCGA-BR-8368-01 16 75448501 75448501 T - RP11-77K12.1 Frame_Shift_Del p.R110Efs*18 0.26 TCGA-BR-8368-01 16 81929443 81929443 G A PLCG2 Silent p.P368P 0.36 TCGA-BR-8368-01 16 84486938 84486938 C A ATP2C2 Missense_Mutation p.F647L 0.17 deleterious(0) probably_damaging(0.927) TCGA-BR-8368-01 16 84695452 84695452 C T KLHL36 Nonsense_Mutation p.Q522* 0.35 TCGA-BR-8368-01 16 87376516 87376516 C T FBXO31 Silent p.T233T 0.27 TCGA-BR-8368-01 16 88601211 88601211 C - ZFPM1 Frame_Shift_Del p.S951Pfs*55 0.20 TCGA-BR-8368-01 16 89347376 89347376 C T ANKRD11 Silent p.P1858P 0.40 TCGA-BR-8368-01 16 89350961 89350961 G C ANKRD11 Missense_Mutation p.D663E 0.29 probably_damaging(0.935) TCGA-BR-8368-01 17 1587865 1587865 T C PRPF8 Translation_Start_Site p.M1? 0.32 deleterious_low_confidence(0) benign(0) TCGA-BR-8368-01 17 17061827 17061827 G - MPRIP Frame_Shift_Del p.E521Sfs*104 0.32 TCGA-BR-8368-01 17 17127263 17127263 G A FLCN Silent p.I197I 0.06 TCGA-BR-8368-01 17 18023035 18023035 C T MYO15A Silent p.Y307Y 0.27 TCGA-BR-8368-01 17 1961105 1961105 G A HIC1 Missense_Mutation p.G393D 0.44 tolerated(0.58) benign(0.164) TCGA-BR-8368-01 17 21087727 21087727 C T DHRS7B Silent p.V190V 0.32 TCGA-BR-8368-01 17 2186925 2186925 C A SMG6 Missense_Mutation p.K814N 0.40 deleterious(0) probably_damaging(0.994) TCGA-BR-8368-01 17 2224617 2224618 AA - SRR Frame_Shift_Del p.R141Sfs*57 0.31 TCGA-BR-8368-01 17 2541468 2541468 T C PAFAH1B1 5'UTR 0.38 TCGA-BR-8368-01 17 26107875 26107875 C T NOS2 Missense_Mutation p.V308I 0.24 tolerated(0.19) benign(0.06) TCGA-BR-8368-01 17 26449740 26449740 T - NLK Frame_Shift_Del p.F192Lfs*30 0.29 TCGA-BR-8368-01 17 26874689 26874689 G A UNC119 Intron 0.24 TCGA-BR-8368-01 17 26976285 26976285 C A SDF2 Missense_Mutation p.A120S 0.09 deleterious(0) possibly_damaging(0.905) TCGA-BR-8368-01 17 27010016 27010016 A G SUPT6H Missense_Mutation p.Q595R 0.11 deleterious(0) benign(0.235) TCGA-BR-8368-01 17 27068463 27068463 C T NEK8 Nonsense_Mutation p.R642* 0.30 TCGA-BR-8368-01 17 27248731 27248731 C T PHF12 Missense_Mutation p.V271I 0.43 deleterious(0) benign(0.109) TCGA-BR-8368-01 17 27380441 27380441 G A PIPOX Missense_Mutation p.R163Q 0.25 tolerated(0.58) benign(0.018) TCGA-BR-8368-01 17 28512115 28512115 C T NSRP1 Missense_Mutation p.A367V 0.14 deleterious(0.03) benign(0.018) TCGA-BR-8368-01 17 28512116 28512116 G A NSRP1 Silent p.A367A 0.29 TCGA-BR-8368-01 17 32957082 32957082 T A TMEM132E Missense_Mutation p.V375D 0.29 deleterious(0) probably_damaging(0.953) TCGA-BR-8368-01 17 34863341 34863341 G A MYO19 Missense_Mutation p.A455V 0.31 tolerated(0.41) possibly_damaging(0.559) TCGA-BR-8368-01 17 34912960 34912960 C T GGNBP2 Missense_Mutation p.A71V 0.41 deleterious(0.03) benign(0.101) TCGA-BR-8368-01 17 37898828 37898828 A T GRB7 Silent p.R78R 0.05 TCGA-BR-8368-01 17 39123030 39123030 T C KRT39 Missense_Mutation p.T27A 0.20 tolerated(0.17) benign(0.001) TCGA-BR-8368-01 17 39280073 39280073 C T KRTAP4-12 Missense_Mutation p.C101Y 0.34 deleterious(0.02) unknown(0) TCGA-BR-8368-01 17 39505608 39505608 A G KRT33A Missense_Mutation p.F141L 0.27 tolerated(0.18) benign(0.327) TCGA-BR-8368-01 17 40666353 40666353 C T ATP6V0A1 Silent p.S766S 0.35 TCGA-BR-8368-01 17 40832215 40832215 C T CCR10 Missense_Mutation p.G149R 0.38 tolerated(0.78) benign(0.01) TCGA-BR-8368-01 17 40997348 40997348 C - AOC2 Frame_Shift_Del p.V237Wfs*60 0.09 TCGA-BR-8368-01 17 41891388 41891388 C T MPP3 Missense_Mutation p.A416T 0.44 tolerated(0.73) probably_damaging(0.928) TCGA-BR-8368-01 17 42335473 42335473 C T SLC4A1 Missense_Mutation p.R388H 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8368-01 17 42992767 42992767 G A GFAP Missense_Mutation p.R30C 0.32 deleterious(0.01) possibly_damaging(0.857) TCGA-BR-8368-01 17 43196237 43196237 G A PLCD3 Silent p.G286G 0.23 TCGA-BR-8368-01 17 45925675 45925675 C T SP6 Missense_Mutation p.G41R 0.39 tolerated_low_confidence(0.06) probably_damaging(0.992) TCGA-BR-8368-01 17 4720288 4720288 G A PLD2 Missense_Mutation p.V547I 0.39 deleterious(0.04) benign(0.007) TCGA-BR-8368-01 17 48447367 48447367 A G MRPL27 Intron 0.44 TCGA-BR-8368-01 17 48546095 48546095 C T CHAD Missense_Mutation p.C27Y 0.56 deleterious(0) probably_damaging(0.999) TCGA-BR-8368-01 17 48757227 48757227 G A ABCC3 Silent p.E1258E 0.31 TCGA-BR-8368-01 17 5085734 5085734 A G ZNF594 Silent p.N606N 0.32 TCGA-BR-8368-01 17 5359340 5359340 G A DHX33 Nonsense_Mutation p.R338* 0.35 TCGA-BR-8368-01 17 56400095 56400095 C - BZRAP1 Frame_Shift_Del p.V413* 0.27 TCGA-BR-8368-01 17 57917285 57917285 T C VMP1 3'UTR 0.11 TCGA-BR-8368-01 17 58740989 58740989 T - PPM1D 3'UTR 0.31 TCGA-BR-8368-01 17 61514812 61514812 C T CYB561 Missense_Mutation p.A33T 0.12 tolerated(0.31) benign(0.007) TCGA-BR-8368-01 17 61615881 61615881 C T KCNH6 Silent p.R604R 0.33 TCGA-BR-8368-01 17 62018409 62018409 G A SCN4A Missense_Mutation p.R1745C 0.37 deleterious(0.04) benign(0.176) TCGA-BR-8368-01 17 62019281 62019281 C T SCN4A Missense_Mutation p.R1454Q 0.34 deleterious(0.01) probably_damaging(0.941) TCGA-BR-8368-01 17 6659353 6659353 C T XAF1 5'UTR 0.31 TCGA-BR-8368-01 17 67303002 67303002 G A ABCA5 Nonsense_Mutation p.R218* 0.27 TCGA-BR-8368-01 17 6939720 6939720 C - SLC16A13 Frame_Shift_Del p.D9Tfs*50 0.25 TCGA-BR-8368-01 17 71166221 71166221 A G SSTR2 Missense_Mutation p.T255A 0.39 deleterious(0) probably_damaging(0.984) TCGA-BR-8368-01 17 7144120 7144120 G A GABARAP 3'UTR 0.24 TCGA-BR-8368-01 17 73008887 73008887 G A ICT1 Missense_Mutation p.G36S 0.44 tolerated(0.31) benign(0.136) TCGA-BR-8368-01 17 7320418 7320418 A T NLGN2 Missense_Mutation p.E603V 0.42 deleterious(0) probably_damaging(0.957) TCGA-BR-8368-01 17 7330302 7330302 A G C17orf74 Missense_Mutation p.N331S 0.24 tolerated(0.54) possibly_damaging(0.801) TCGA-BR-8368-01 17 73491063 73491063 C - KIAA0195 Frame_Shift_Del p.S895Pfs*13 0.48 TCGA-BR-8368-01 17 74077483 74077483 G A ZACN Silent p.T223T 0.37 TCGA-BR-8368-01 17 74324855 74324855 G A PRPSAP1 Missense_Mutation p.R242C 0.30 deleterious(0) probably_damaging(0.969) TCGA-BR-8368-01 17 74387005 74387005 T C UBE2O 3'UTR 0.34 TCGA-BR-8368-01 17 76421587 76421587 G A DNAH17 Silent p.N4350N 0.15 TCGA-BR-8368-01 17 76499111 76499111 G A DNAH17-AS1 3'UTR 0.32 TCGA-BR-8368-01 17 76800028 76800028 C T USP36 Missense_Mutation p.R750H 0.12 tolerated(0.71) benign(0.001) TCGA-BR-8368-01 17 7751995 7751995 C - KDM6B Frame_Shift_Del p.S799Afs*95 0.41 TCGA-BR-8368-01 17 78176025 78176025 G - CARD14 Frame_Shift_Del p.D677Tfs*45 0.24 TCGA-BR-8368-01 17 78704481 78704481 C T RPTOR Missense_Mutation p.A210V 0.38 deleterious(0.01) benign(0.205) TCGA-BR-8368-01 17 79866756 79866756 G A PCYT2 Silent p.H112H 0.27 TCGA-BR-8368-01 17 79991680 79991680 C T RAC3 Missense_Mutation p.P185L 0.39 tolerated_low_confidence(0.06) benign(0.007) TCGA-BR-8368-01 17 80012606 80012606 G A GPS1 Missense_Mutation p.A217T 0.31 deleterious(0) probably_damaging(0.993) TCGA-BR-8368-01 17 80014794 80014794 C T GPS1 Missense_Mutation p.R485C 0.36 deleterious(0.01) probably_damaging(0.969) TCGA-BR-8368-01 17 80332696 80332696 C T UTS2R Missense_Mutation p.R166C 0.30 deleterious(0) probably_damaging(0.998) TCGA-BR-8368-01 17 80789902 80789902 C T ZNF750 Silent p.P143P 0.22 TCGA-BR-8368-01 17 8445463 8445463 G A MYH10 Silent p.L523L 0.46 TCGA-BR-8368-01 17 9804374 9804374 G A RCVRN Missense_Mutation p.P142L 0.43 deleterious(0) probably_damaging(1) TCGA-BR-8368-01 18 13438332 13438332 G A LDLRAD4 Missense_Mutation p.E44K 0.33 tolerated_low_confidence(0.08) possibly_damaging(0.683) TCGA-BR-8368-01 18 21033264 21033264 G A RIOK3 5'UTR 0.23 TCGA-BR-8368-01 18 24056602 24056602 A G KCTD1 Silent p.G62G 0.29 TCGA-BR-8368-01 18 28923779 28923779 T - DSG1 Intron 0.71 TCGA-BR-8368-01 18 30349862 30349862 G - KLHL14 Frame_Shift_Del p.V232Wfs*30 0.36 TCGA-BR-8368-01 18 33263466 33263466 C A GALNT1 Missense_Mutation p.A198D 0.09 tolerated(0.57) benign(0.007) TCGA-BR-8368-01 18 33606891 33606891 G A RPRD1A Missense_Mutation p.A254V 0.36 tolerated(0.63) benign(0.001) TCGA-BR-8368-01 18 34174753 34174753 C T FHOD3 Missense_Mutation p.R204C 0.21 deleterious(0) probably_damaging(0.995) TCGA-BR-8368-01 18 34340642 34340642 G A FHOD3 Silent p.A1324A 0.31 TCGA-BR-8368-01 18 34647292 34647292 G A KIAA1328 Missense_Mutation p.R339Q 0.30 tolerated(0.41) benign(0.046) TCGA-BR-8368-01 18 45566519 45566519 C - ZBTB7C Frame_Shift_Del p.P321Lfs*18 0.24 TCGA-BR-8368-01 18 48442541 48442541 A G ME2 Silent p.G132G 0.30 TCGA-BR-8368-01 18 52556660 52556660 T C RAB27B 3'UTR 0.21 TCGA-BR-8368-01 18 5394709 5394709 C A EPB41L3 Missense_Mutation p.E1079D 0.30 tolerated(0.08) probably_damaging(0.998) TCGA-BR-8368-01 18 5428401 5428401 G A EPB41L3 Missense_Mutation p.R326W 0.38 deleterious(0) probably_damaging(1) TCGA-BR-8368-01 18 60021739 60021739 C T TNFRSF11A Silent p.C133C 0.35 TCGA-BR-8368-01 18 60639886 60639887 - A PHLPP1 Frame_Shift_Ins p.T1236Nfs*38 0.26 TCGA-BR-8368-01 18 6958568 6958568 G A LAMA1 Silent p.Y2624Y 0.24 TCGA-BR-8368-01 18 70526122 70526122 T A NETO1 Missense_Mutation p.K136N 0.45 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8368-01 18 72913820 72913820 C T ZADH2 Missense_Mutation p.V229I 0.41 tolerated(0.73) benign(0.005) TCGA-BR-8368-01 18 74639294 74639294 C T ZNF236 Missense_Mutation p.T1410M 0.31 deleterious(0) possibly_damaging(0.684) TCGA-BR-8368-01 18 8085713 8085713 A G PTPRM Silent p.L532L 0.41 TCGA-BR-8368-01 19 10940881 10940882 - C DNM2 Frame_Shift_Ins p.L793Pfs*31 0.31 TCGA-BR-8368-01 19 11132542 11132542 G A SMARCA4 Missense_Mutation p.E920K 0.24 probably_damaging(0.965) TCGA-BR-8368-01 19 11135079 11135079 G A SMARCA4 Missense_Mutation p.V1016M 0.28 probably_damaging(0.965) TCGA-BR-8368-01 19 1119081 1119081 C T SBNO2 Missense_Mutation p.V486I 0.50 deleterious(0) probably_damaging(0.957) TCGA-BR-8368-01 19 11488473 11488473 A - EPOR 3'UTR 0.35 TCGA-BR-8368-01 19 11660378 11660378 C T CNN1 Missense_Mutation p.A221V 0.17 tolerated(0.12) possibly_damaging(0.548) TCGA-BR-8368-01 19 11891075 11891075 T C ZNF441 Missense_Mutation p.C146R 0.18 tolerated(0.12) benign(0) TCGA-BR-8368-01 19 12875651 12875651 G A HOOK2 Missense_Mutation p.R602C 0.38 deleterious(0.02) benign(0.021) TCGA-BR-8368-01 19 12985336 12985336 G A MAST1 Silent p.A1455A 0.20 TCGA-BR-8368-01 19 13941853 13941853 C T ZSWIM4 Missense_Mutation p.R987C 0.51 deleterious(0) unknown(0) TCGA-BR-8368-01 19 1432590 1432590 G - DAZAP1 Frame_Shift_Del p.A318Qfs*17 0.29 TCGA-BR-8368-01 19 1487181 1487181 C T PCSK4 Missense_Mutation p.G272S 0.33 deleterious(0) probably_damaging(0.999) TCGA-BR-8368-01 19 15233799 15233799 G A ILVBL Missense_Mutation p.R170W 0.33 deleterious(0) possibly_damaging(0.832) TCGA-BR-8368-01 19 15739191 15739191 G A CYP4F8 RNA 0.33 TCGA-BR-8368-01 19 17366391 17366391 G A USHBP1 Missense_Mutation p.R499W 0.38 deleterious(0.03) possibly_damaging(0.891) TCGA-BR-8368-01 19 17373521 17373521 C A USHBP1 Missense_Mutation p.G161V 0.35 tolerated(0.45) benign(0.122) TCGA-BR-8368-01 19 17412206 17412206 C T ABHD8 Missense_Mutation p.G74S 0.31 tolerated_low_confidence(0.07) benign(0.095) TCGA-BR-8368-01 19 17838362 17838362 C - MAP1S Frame_Shift_Del p.R725Gfs*285 0.38 TCGA-BR-8368-01 19 17918981 17918981 G A B3GNT3 Missense_Mutation p.R122H 0.42 deleterious(0.04) possibly_damaging(0.467) TCGA-BR-8368-01 19 1817235 1817235 C T REXO1 Missense_Mutation p.A1062T 0.13 deleterious(0) probably_damaging(0.998) TCGA-BR-8368-01 19 18779936 18779936 A G KLHL26 Missense_Mutation p.I577V 0.49 tolerated(0.17) benign(0.114) TCGA-BR-8368-01 19 19638983 19638983 C T NDUFA13 3'UTR 0.40 TCGA-BR-8368-01 19 19656228 19656229 - G CILP2 Frame_Shift_Ins p.S961Qfs*106 0.33 TCGA-BR-8368-01 19 19681602 19681602 G A PBX4 Silent p.D78D 0.37 TCGA-BR-8368-01 19 19823267 19823267 C T ZNF14 Missense_Mutation p.G275R 0.36 deleterious(0.03) probably_damaging(1) TCGA-BR-8368-01 19 20045755 20045755 C T ZNF93 3'UTR 0.45 TCGA-BR-8368-01 19 20844396 20844396 G A ZNF626 5'UTR 0.36 TCGA-BR-8368-01 19 2110223 2110223 C T AP3D1 Missense_Mutation p.G1059D 0.32 tolerated(0.05) benign(0.198) TCGA-BR-8368-01 19 22375844 22375844 C A ZNF676 Missense_Mutation p.R35I 0.26 tolerated(0.09) probably_damaging(0.979) TCGA-BR-8368-01 19 2933664 2933666 ACT - ZNF77 In_Frame_Del p.S487del 0.30 TCGA-BR-8368-01 19 30936377 30936377 C T ZNF536 Silent p.C636C 0.27 TCGA-BR-8368-01 19 3496787 3496787 G A DOHH Missense_Mutation p.A9V 0.34 tolerated(0.08) benign(0.09) TCGA-BR-8368-01 19 36124665 36124665 C T RBM42 Missense_Mutation p.A254V 0.27 tolerated(0.32) unknown(0) TCGA-BR-8368-01 19 3613180 3613180 G A CACTIN Silent p.Y554Y 0.46 TCGA-BR-8368-01 19 36258757 36258757 G A C19orf55 Missense_Mutation p.R337Q 0.31 tolerated(0.31) benign(0.006) TCGA-BR-8368-01 19 36272095 36272095 C T ARHGAP33 Silent p.H342H 0.36 TCGA-BR-8368-01 19 36276195 36276195 T C ARHGAP33 Missense_Mutation p.L609P 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.883) TCGA-BR-8368-01 19 36940209 36940209 T - ZNF566 Frame_Shift_Del p.K310Nfs*139 0.22 TCGA-BR-8368-01 19 38103015 38103015 G A ZNF540 Silent p.K278K 0.31 TCGA-BR-8368-01 19 40411726 40411726 C - FCGBP Frame_Shift_Del p.G1301Vfs*7 0.25 TCGA-BR-8368-01 19 40433985 40433985 T C FCGBP Missense_Mutation p.K95R 0.33 benign(0.01) TCGA-BR-8368-01 19 40729347 40729347 C T CNTD2 Missense_Mutation p.G207D 0.13 tolerated(0.09) probably_damaging(0.97) TCGA-BR-8368-01 19 41122916 41122916 C T LTBP4 Silent p.G1045G 0.29 TCGA-BR-8368-01 19 41601775 41601775 G A CYP2A13 Missense_Mutation p.D472N 0.39 tolerated(0.11) benign(0.109) TCGA-BR-8368-01 19 41630686 41630686 C T CYP2F1 Missense_Mutation p.R343C 0.45 deleterious(0) possibly_damaging(0.644) TCGA-BR-8368-01 19 42585373 42585373 T C ZNF574 Missense_Mutation p.V872A 0.39 tolerated(0.23) benign(0.001) TCGA-BR-8368-01 19 42853826 42853826 A G MEGF8 Missense_Mutation p.D758G 0.36 tolerated(0.17) benign(0.053) TCGA-BR-8368-01 19 42880471 42880471 C T MEGF8 Silent p.S2627S 0.41 TCGA-BR-8368-01 19 43530519 43530519 C - PSG11 Frame_Shift_Del p.L4Sfs*22 0.17 TCGA-BR-8368-01 19 44096194 44096194 G - IRGQ Frame_Shift_Del p.P619Lfs*17 0.29 TCGA-BR-8368-01 19 4430584 4430584 C T CHAF1A Silent p.D631D 0.37 TCGA-BR-8368-01 19 4512150 4512150 C - PLIN4 Frame_Shift_Del p.A594Qfs*2 0.28 TCGA-BR-8368-01 19 47424587 47424587 T C ARHGAP35 Silent p.L885L 0.04 TCGA-BR-8368-01 19 47572412 47572412 C G ZC3H4 Missense_Mutation p.E779Q 0.33 unknown(0) TCGA-BR-8368-01 19 47969509 47969509 G T SLC8A2 Missense_Mutation p.P51Q 0.35 tolerated(0.22) possibly_damaging(0.834) TCGA-BR-8368-01 19 4816465 4816465 G - TICAM1 Frame_Shift_Del p.P642Hfs*50 0.32 TCGA-BR-8368-01 19 48337743 48337743 G A TPRX2P Missense_Mutation p.A15T 0.40 tolerated_low_confidence(0.06) unknown(0) TCGA-BR-8368-01 19 48918144 48918144 C T GRIN2D Missense_Mutation p.P479L 0.36 tolerated(0.65) benign(0.023) TCGA-BR-8368-01 19 49001494 49001494 C T LMTK3 Silent p.A973A 0.38 TCGA-BR-8368-01 19 4902691 4902691 G A ARRDC5 Silent p.Y63Y 0.40 TCGA-BR-8368-01 19 49136618 49136618 G T DBP Intron 0.08 TCGA-BR-8368-01 19 49388705 49388705 C A TULP2 Missense_Mutation p.R354I 0.25 deleterious(0) probably_damaging(0.999) TCGA-BR-8368-01 19 49658225 49658225 C A HRC Missense_Mutation p.K90N 0.26 tolerated(0.08) benign(0.05) TCGA-BR-8368-01 19 50099279 50099280 CA - PRR12 Frame_Shift_Del p.I564Hfs*75 0.29 TCGA-BR-8368-01 19 50302631 50302631 T C AP2A1 Missense_Mutation p.L338P 0.28 deleterious(0) probably_damaging(1) TCGA-BR-8368-01 19 50411685 50411685 C T NUP62 Silent p.T460T 0.31 TCGA-BR-8368-01 19 51228569 51228569 G A CLEC11A Missense_Mutation p.G273S 0.41 tolerated_low_confidence(0.06) possibly_damaging(0.7) TCGA-BR-8368-01 19 51411929 51411929 G A KLK4 Silent p.S127S 0.40 TCGA-BR-8368-01 19 51503681 51503682 - T KLK8 Frame_Shift_Ins p.P122Tfs*15 0.25 TCGA-BR-8368-01 19 51518125 51518125 C T KLK10 Silent p.Q254Q 0.23 TCGA-BR-8368-01 19 53381390 53381390 C T ZNF320 3'UTR 0.12 TCGA-BR-8368-01 19 53384267 53384267 C T ZNF320 Missense_Mutation p.R371H 0.29 tolerated(1) benign(0.001) TCGA-BR-8368-01 19 53473566 53473566 T - ZNF702P RNA 0.31 TCGA-BR-8368-01 19 53668313 53668313 C T ZNF665 Missense_Mutation p.R477Q 0.34 tolerated(0.98) benign(0.022) TCGA-BR-8368-01 19 53669274 53669274 G A ZNF665 Missense_Mutation p.H157Y 0.40 tolerated(0.13) benign(0) TCGA-BR-8368-01 19 53912992 53912992 T C ZNF765 3'UTR 0.31 TCGA-BR-8368-01 19 54401692 54401692 A G PRKCG Splice_Site p.X365_splice 0.38 TCGA-BR-8368-01 19 54866912 54866912 C T LAIR1 Missense_Mutation p.E277K 0.34 tolerated(0.11) possibly_damaging(0.905) TCGA-BR-8368-01 19 549819 549819 C T GZMM 3'UTR 0.56 TCGA-BR-8368-01 19 55450565 55450565 C T NLRP7 Missense_Mutation p.R541Q 0.35 tolerated(0.85) benign(0.003) TCGA-BR-8368-01 19 55556400 55556400 G A RDH13 3'UTR 0.32 TCGA-BR-8368-01 19 55594834 55594834 G A EPS8L1 Missense_Mutation p.A435T 0.35 tolerated(0.08) benign(0.004) TCGA-BR-8368-01 19 55715343 55715343 G A PTPRH Silent p.P231P 0.34 TCGA-BR-8368-01 19 56163869 56163869 G A CCDC106 Silent p.S200S 0.34 TCGA-BR-8368-01 19 56164130 56164130 G A CCDC106 3'UTR 0.36 TCGA-BR-8368-01 19 56172557 56172557 T C U2AF2 Splice_Site p.X162_splice 0.52 TCGA-BR-8368-01 19 56952725 56952725 T G ZNF667 Silent p.R547R 0.34 TCGA-BR-8368-01 19 57803352 57803352 C T ZNF460 Silent p.C481C 0.36 TCGA-BR-8368-01 19 57932545 57932545 T - ZNF17 Frame_Shift_Del p.F563Lfs*127 0.24 TCGA-BR-8368-01 19 58049657 58049657 A - ZNF549 Frame_Shift_Del p.R431Dfs*206 0.32 TCGA-BR-8368-01 19 58083437 58083437 G A ZNF416 3'UTR 0.07 TCGA-BR-8368-01 19 5843547 5843547 G A FUT3 3'UTR 0.30 TCGA-BR-8368-01 19 58967034 58967034 G A ZNF324B Silent p.S241S 0.30 TCGA-BR-8368-01 19 58988901 58988901 C T ZNF446 Missense_Mutation p.H106Y 0.40 deleterious(0.02) possibly_damaging(0.625) TCGA-BR-8368-01 19 5951588 5951588 T - RANBP3 Frame_Shift_Del p.N33Tfs*31 0.14 TCGA-BR-8368-01 19 6380351 6380351 G A GTF2F1 Nonsense_Mutation p.R499* 0.35 TCGA-BR-8368-01 19 758107 758107 C T MISP Silent p.P387P 0.32 TCGA-BR-8368-01 19 7704641 7704641 G A STXBP2 Missense_Mutation p.R65Q 0.43 deleterious(0.02) benign(0.223) TCGA-BR-8368-01 19 7975374 7975374 C T MAP2K7 Missense_Mutation p.R162C 0.29 deleterious(0) probably_damaging(1) TCGA-BR-8368-01 19 7976016 7976016 G A MAP2K7 Missense_Mutation p.R276Q 0.48 deleterious(0.01) probably_damaging(0.983) TCGA-BR-8368-01 19 8028518 8028518 C T ELAVL1 Missense_Mutation p.R277H 0.35 deleterious(0.03) possibly_damaging(0.835) TCGA-BR-8368-01 19 8197972 8197972 G A FBN3 Missense_Mutation p.T537I 0.56 tolerated(0.29) benign(0.387) TCGA-BR-8368-01 19 8495651 8495651 G A MARCH2 Missense_Mutation p.R161H 0.39 deleterious(0.01) possibly_damaging(0.847) TCGA-BR-8368-01 19 9084370 9084370 T G MUC16 Missense_Mutation p.D2482A 0.33 unknown(0) TCGA-BR-8368-01 19 9296544 9296544 G C OR7D2 Silent p.G29G 0.35 TCGA-BR-8368-01 1 100342155 100342155 T C AGL Splice_Site p.X475_splice 0.35 TCGA-BR-8368-01 1 100614420 100614420 T A LRRC39 3'UTR 0.21 TCGA-BR-8368-01 1 101704655 101704655 G A S1PR1 Missense_Mutation p.A39T 0.38 tolerated(0.61) benign(0) TCGA-BR-8368-01 1 10336425 10336425 T C KIF1B Silent p.D329D 0.13 TCGA-BR-8368-01 1 103379956 103379956 A T COL11A1 Silent p.P1310P 0.26 TCGA-BR-8368-01 1 104114092 104114092 A C AMY2B Intron 0.21 TCGA-BR-8368-01 1 109242456 109242456 A - PRPF38B Frame_Shift_Del p.K487Nfs*44 0.29 TCGA-BR-8368-01 1 109479933 109479933 C A CLCC1 Missense_Mutation p.E383D 0.34 tolerated(0.1) benign(0.102) TCGA-BR-8368-01 1 109553736 109553736 C T WDR47 Missense_Mutation p.R318H 0.40 deleterious(0) probably_damaging(0.985) TCGA-BR-8368-01 1 109794579 109794579 C T CELSR2 Silent p.G626G 0.33 TCGA-BR-8368-01 1 109804465 109804465 G A CELSR2 Missense_Mutation p.G1445R 0.27 deleterious(0.03) probably_damaging(0.999) TCGA-BR-8368-01 1 113241375 113241375 G A MOV10 Silent p.R849R 0.30 TCGA-BR-8368-01 1 11595573 11595573 G A PTCHD2 Missense_Mutation p.G1230S 0.14 tolerated(0.06) possibly_damaging(0.896) TCGA-BR-8368-01 1 117633229 117633229 T - TTF2 Frame_Shift_Del p.F859Lfs*12 0.22 TCGA-BR-8368-01 1 118499758 118499758 G A WDR3 Missense_Mutation p.E841K 0.41 tolerated(0.75) benign(0.129) TCGA-BR-8368-01 1 1372687 1372687 G A VWA1 Missense_Mutation p.G152S 0.21 tolerated(1) benign(0.241) TCGA-BR-8368-01 1 143767741 143767741 A G PPIAL4G Silent p.F36F 0.24 TCGA-BR-8368-01 1 145584029 145584029 G A PIAS3 Silent p.P420P 0.37 TCGA-BR-8368-01 1 150201415 150201415 C A ANP32E Missense_Mutation p.E161D 0.10 tolerated(0.42) unknown(0) TCGA-BR-8368-01 1 150460423 150460423 C T TARS2 Silent p.S52S 0.15 TCGA-BR-8368-01 1 150599660 150599660 G - ENSA Intron 0.33 TCGA-BR-8368-01 1 151338267 151338267 C T SELENBP1 Missense_Mutation p.G300D 0.05 tolerated(0.13) probably_damaging(0.956) TCGA-BR-8368-01 1 151400802 151400802 G T POGZ Missense_Mutation p.P219H 0.26 deleterious(0.05) probably_damaging(0.997) TCGA-BR-8368-01 1 151826067 151826068 - T THEM5 5'UTR 0.21 TCGA-BR-8368-01 1 152080396 152080396 C T TCHH Missense_Mutation p.R1766H 0.41 unknown(0) TCGA-BR-8368-01 1 152285028 152285028 G A FLG Silent p.S778S 0.32 TCGA-BR-8368-01 1 153004968 153004968 C T SPRR1B Silent p.C49C 0.41 TCGA-BR-8368-01 1 155108811 155108811 G T SLC50A1 Silent p.V39V 0.38 TCGA-BR-8368-01 1 155112444 155112444 G A DPM3 Silent p.R121R 0.40 TCGA-BR-8368-01 1 155233068 155233068 G A CLK2 Missense_Mutation p.R480C 0.33 tolerated(0.08) benign(0.289) TCGA-BR-8368-01 1 155448699 155448699 C T ASH1L Missense_Mutation p.R1321Q 0.35 deleterious_low_confidence(0.03) probably_damaging(0.996) TCGA-BR-8368-01 1 157666960 157666960 T - FCRL3 Frame_Shift_Del p.R272Gfs*3 0.29 TCGA-BR-8368-01 1 157804523 157804523 A G CD5L Missense_Mutation p.F131S 0.28 tolerated(0.48) benign(0.002) TCGA-BR-8368-01 1 158609686 158609686 G A SPTA1 Missense_Mutation p.R1617W 0.36 deleterious(0) possibly_damaging(0.908) TCGA-BR-8368-01 1 160053937 160053937 C T KCNJ9 Silent p.R39R 0.44 TCGA-BR-8368-01 1 161184004 161184004 C - NDUFS2 3'UTR 0.22 TCGA-BR-8368-01 1 161697260 161697260 G A FCRLB Silent p.S363S 0.37 TCGA-BR-8368-01 1 165624622 165624622 C T MGST3 Nonsense_Mutation p.R114* 0.32 TCGA-BR-8368-01 1 169446550 169446552 AAG - SLC19A2 In_Frame_Del p.F217del 0.35 TCGA-BR-8368-01 1 169828337 169828337 C T SCYL3 Missense_Mutation p.R386H 0.43 deleterious(0) probably_damaging(0.994) TCGA-BR-8368-01 1 172410734 172410734 T - PIGC 3'UTR 0.35 TCGA-BR-8368-01 1 17312850 17312850 C T ATP13A2 Missense_Mutation p.V1137M 0.60 tolerated(0.32) benign(0.001) TCGA-BR-8368-01 1 175049336 175049336 G A TNN Silent p.T274T 0.33 TCGA-BR-8368-01 1 175355234 175355234 C T TNR Missense_Mutation p.E571K 0.40 tolerated(0.17) benign(0.096) TCGA-BR-8368-01 1 175956141 175956141 G A RFWD2 Nonsense_Mutation p.R691* 0.22 TCGA-BR-8368-01 1 179620047 179620047 G A TDRD5 Missense_Mutation p.G616S 0.36 tolerated(0.28) possibly_damaging(0.637) TCGA-BR-8368-01 1 180904705 180904705 C - KIAA1614 Frame_Shift_Del p.V556Sfs*21 0.27 TCGA-BR-8368-01 1 181741306 181741306 G A CACNA1E Missense_Mutation p.R1693H 0.23 deleterious(0.02) possibly_damaging(0.812) TCGA-BR-8368-01 1 182354926 182354926 G A GLUL Missense_Mutation p.A191V 0.38 tolerated(0.11) benign(0.054) TCGA-BR-8368-01 1 183885736 183885736 G A RGL1 Silent p.S670S 0.37 TCGA-BR-8368-01 1 186326586 186326586 G A TPR Missense_Mutation p.A556V 0.37 possibly_damaging(0.483) TCGA-BR-8368-01 1 186368101 186368101 A G C1orf27 Missense_Mutation p.I309V 0.11 tolerated(0.38) possibly_damaging(0.55) TCGA-BR-8368-01 1 190067835 190067835 C T BRINP3 Silent p.K538K 0.39 TCGA-BR-8368-01 1 192335245 192335245 T - RGS21 Frame_Shift_Del p.L152Cfs*7 0.17 TCGA-BR-8368-01 1 19446794 19446794 T C UBR4 Missense_Mutation p.N3397S 0.05 benign(0.001) TCGA-BR-8368-01 1 196300297 196300297 T G KCNT2 Silent p.R698R 0.35 TCGA-BR-8368-01 1 197128758 197128758 G A ZBTB41 Missense_Mutation p.P821S 0.34 tolerated(0.34) benign(0) TCGA-BR-8368-01 1 201022686 201022686 G A CACNA1S Silent p.S1232S 0.40 TCGA-BR-8368-01 1 201817694 201817694 C T IPO9 Silent p.A162A 0.15 TCGA-BR-8368-01 1 202097070 202097070 C A GPR37L1 Missense_Mutation p.P278T 0.31 deleterious(0.03) benign(0.257) TCGA-BR-8368-01 1 202288157 202288157 C - LGR6 Frame_Shift_Del p.R911Gfs*8 0.24 TCGA-BR-8368-01 1 20304940 20304940 T C PLA2G2A Missense_Mutation p.S40G 0.42 tolerated(0.09) benign(0.062) TCGA-BR-8368-01 1 204228411 204228411 C - PLEKHA6 Frame_Shift_Del p.V328Yfs*172 0.28 TCGA-BR-8368-01 1 205632446 205632446 C T SLC45A3 Missense_Mutation p.R158H 0.29 tolerated(0.12) probably_damaging(0.985) TCGA-BR-8368-01 1 205719147 205719147 C - NUCKS1 5'UTR 0.25 TCGA-BR-8368-01 1 205883891 205883891 G T SLC26A9 3'UTR 0.29 TCGA-BR-8368-01 1 207642044 207642044 C - CR2 Frame_Shift_Del p.T209Hfs*10 0.29 TCGA-BR-8368-01 1 208084435 208084435 G A CD34 5'UTR 0.50 TCGA-BR-8368-01 1 20975501 20975501 G A PINK1 Missense_Mutation p.R422H 0.41 tolerated(0.55) benign(0.004) TCGA-BR-8368-01 1 209797293 209797295 ACA - LAMB3 In_Frame_Del p.L676del 0.32 TCGA-BR-8368-01 1 209961960 209961960 G A IRF6 Silent p.Y403Y 0.43 TCGA-BR-8368-01 1 217975157 217975157 C T SPATA17 Nonsense_Mutation p.R324* 0.35 TCGA-BR-8368-01 1 223971921 223971923 CTT - TP53BP2 In_Frame_Del p.E1086del 0.41 TCGA-BR-8368-01 1 225598070 225598070 G A LBR Missense_Mutation p.R413C 0.28 tolerated(0.07) probably_damaging(0.97) TCGA-BR-8368-01 1 226349293 226349293 G A ACBD3 Nonsense_Mutation p.R223* 0.38 TCGA-BR-8368-01 1 226568840 226568840 G A PARP1 Missense_Mutation p.A410V 0.34 tolerated(0.19) benign(0.031) TCGA-BR-8368-01 1 228509573 228509573 G T OBSCN Missense_Mutation p.A5968S 0.30 possibly_damaging(0.606) TCGA-BR-8368-01 1 228582330 228582330 G A TRIM11 3'UTR 0.50 TCGA-BR-8368-01 1 229685004 229685004 C T ABCB10 Missense_Mutation p.R232H 0.35 deleterious(0.01) possibly_damaging(0.638) TCGA-BR-8368-01 1 230415295 230415295 C T GALNT2 3'UTR 0.64 TCGA-BR-8368-01 1 230459161 230459161 G A PGBD5 3'UTR 0.32 TCGA-BR-8368-01 1 231902976 231902976 G A DISC1 Silent p.T453T 0.33 TCGA-BR-8368-01 1 232002387 232002387 G A DISC1 3'UTR 0.35 TCGA-BR-8368-01 1 232942451 232942451 T C MAP10 Missense_Mutation p.I561T 0.08 deleterious(0) possibly_damaging(0.9) TCGA-BR-8368-01 1 233802686 233802686 G T KCNK1 Missense_Mutation p.G234V 0.32 deleterious(0) probably_damaging(0.99) TCGA-BR-8368-01 1 236201453 236201453 G T NID1 Nonsense_Mutation p.C412* 0.39 TCGA-BR-8368-01 1 236371463 236371463 A G GPR137B 3'UTR 0.39 TCGA-BR-8368-01 1 237936847 237936847 T C RYR2 Missense_Mutation p.Y3892H 0.28 probably_damaging(0.997) TCGA-BR-8368-01 1 246755187 246755187 T A CNST Missense_Mutation p.I108N 0.35 tolerated(0.6) benign(0.052) TCGA-BR-8368-01 1 248487774 248487774 C T OR2M7 Missense_Mutation p.A33T 0.37 tolerated(0.58) benign(0.004) TCGA-BR-8368-01 1 24981444 24981444 G A SRRM1 Missense_Mutation p.S380N 0.65 unknown(0) TCGA-BR-8368-01 1 26104703 26104703 C T MAN1C1 Silent p.S455S 0.39 TCGA-BR-8368-01 1 26526548 26526548 A G CATSPER4 Missense_Mutation p.E329G 0.33 deleterious(0.04) benign(0.033) TCGA-BR-8368-01 1 26644721 26644721 G A UBXN11 5'UTR 0.77 TCGA-BR-8368-01 1 27102120 27102121 AG - ARID1A Frame_Shift_Del p.S1684Hfs*13 0.38 TCGA-BR-8368-01 1 28527851 28527851 G A DNAJC8 Nonsense_Mutation p.R224* 0.32 TCGA-BR-8368-01 1 29069277 29069279 TGA - YTHDF2 In_Frame_Del p.D166del 0.40 TCGA-BR-8368-01 1 3350436 3350436 C T PRDM16 3'UTR 0.69 TCGA-BR-8368-01 1 36474379 36474379 G A AGO3 Splice_Site p.X294_splice 0.32 TCGA-BR-8368-01 1 36505946 36505946 C T AGO3 Silent p.C692C 0.18 TCGA-BR-8368-01 1 36643530 36643530 C - MAP7D1 Frame_Shift_Del p.C481Afs*94 0.47 TCGA-BR-8368-01 1 37945977 37945980 TGTT - ZC3H12A Frame_Shift_Del p.F178Cfs*52 0.39 TCGA-BR-8368-01 1 37961494 37961495 - T MEAF6 Frame_Shift_Ins p.P197Tfs*4 0.17 TCGA-BR-8368-01 1 40149704 40149704 C T HPCAL4 Missense_Mutation p.G95S 0.27 deleterious(0) probably_damaging(1) TCGA-BR-8368-01 1 40758422 40758422 T - ZMPSTE24 3'UTR 0.62 TCGA-BR-8368-01 1 40879887 40879887 G A SMAP2 Silent p.A182A 0.70 TCGA-BR-8368-01 1 41978959 41978959 C T HIVEP3 Missense_Mutation p.R1978H 0.70 benign(0.002) TCGA-BR-8368-01 1 44386577 44386577 G A ST3GAL3 Missense_Mutation p.V408I 0.89 tolerated(0.4) benign(0.021) TCGA-BR-8368-01 1 45226082 45226082 G A KIF2C Missense_Mutation p.A500T 0.36 deleterious(0) benign(0.101) TCGA-BR-8368-01 1 52530502 52530502 A C BTF3L4 Silent p.T20T 0.26 TCGA-BR-8368-01 1 53741403 53741403 G A LRP8 Silent p.D302D 0.75 TCGA-BR-8368-01 1 64515460 64515460 C A ROR1 Silent p.P87P 0.48 TCGA-BR-8368-01 1 67470100 67470100 T C SLC35D1 Missense_Mutation p.T331A 0.56 deleterious(0.04) benign(0.11) TCGA-BR-8368-01 1 67558998 67558998 T C C1orf141 Missense_Mutation p.K298R 0.43 tolerated(0.61) possibly_damaging(0.801) TCGA-BR-8368-01 1 78430841 78430841 G A FUBP1 Missense_Mutation p.P183L 0.37 tolerated(0.29) benign(0.018) TCGA-BR-8368-01 1 8418586 8418586 G - RERE Frame_Shift_Del p.L1337Cfs*35 0.42 TCGA-BR-8368-01 1 84335593 84335594 - A TTLL7 3'UTR 0.25 TCGA-BR-8368-01 1 85130170 85130170 T - SSX2IP Frame_Shift_Del p.E202Sfs*7 0.27 TCGA-BR-8368-01 1 85816154 85816154 C T DDAH1 Missense_Mutation p.A181T 0.10 deleterious(0.01) probably_damaging(0.96) TCGA-BR-8368-01 1 89298759 89298759 G A PKN2 Splice_Site p.X891_splice 0.41 TCGA-BR-8368-01 1 99470032 99470033 - G LPPR5 Frame_Shift_Ins p.V66Rfs*33 0.30 TCGA-BR-8368-01 20 126054 126054 A G DEFB126 Splice_Site p.X20_splice 0.27 TCGA-BR-8368-01 20 16253811 16253811 G A KIF16B 3'UTR 0.41 TCGA-BR-8368-01 20 16730619 16730619 T G OTOR Silent p.R109R 0.34 TCGA-BR-8368-01 20 1902058 1902058 G A SIRPA Missense_Mutation p.V152M 0.37 tolerated(0.13) benign(0.033) TCGA-BR-8368-01 20 19674007 19674007 A G SLC24A3 Missense_Mutation p.M477V 0.40 deleterious(0) benign(0.311) TCGA-BR-8368-01 20 21143725 21143725 A - RP4-777D9.2 Intron 0.30 TCGA-BR-8368-01 20 23334925 23334926 - A NXT1 Frame_Shift_Ins p.A84Sfs*19 0.27 TCGA-BR-8368-01 20 23346365 23346365 G A GZF1 Missense_Mutation p.A449T 0.50 tolerated(0.11) probably_damaging(0.995) TCGA-BR-8368-01 20 23346366 23346366 C T GZF1 Missense_Mutation p.A449V 0.22 deleterious(0.01) probably_damaging(0.995) TCGA-BR-8368-01 20 25655896 25655896 C A ZNF337 Missense_Mutation p.W676C 0.37 deleterious(0.04) probably_damaging(0.926) TCGA-BR-8368-01 20 279503 279503 T - ZCCHC3 3'UTR 0.32 TCGA-BR-8368-01 20 34218844 34218844 C T CPNE1 Missense_Mutation p.S330N 0.24 tolerated(0.36) benign(0.007) TCGA-BR-8368-01 20 35064650 35064650 G A DLGAP4 Missense_Mutation p.E380K 0.32 deleterious(0.04) benign(0.006) TCGA-BR-8368-01 20 35521429 35521429 T - SAMHD1 Frame_Shift_Del p.K596Rfs*35 0.27 TCGA-BR-8368-01 20 37396225 37396225 C T ACTR5 Missense_Mutation p.R518W 0.35 deleterious(0) possibly_damaging(0.72) TCGA-BR-8368-01 20 39976275 39976275 G A LPIN3 Silent p.L92L 0.27 TCGA-BR-8368-01 20 43379180 43379180 C A KCNK15 Missense_Mutation p.L232I 0.31 deleterious(0) possibly_damaging(0.864) TCGA-BR-8368-01 20 43723770 43723770 C T KCNS1 Missense_Mutation p.C441Y 0.29 deleterious(0) probably_damaging(1) TCGA-BR-8368-01 20 44515176 44515176 G A SPATA25 Missense_Mutation p.P222S 0.29 deleterious_low_confidence(0.03) benign(0.439) TCGA-BR-8368-01 20 44691344 44691344 C A NCOA5 Silent p.T445T 0.22 TCGA-BR-8368-01 20 46265284 46265284 C T NCOA3 Silent p.D718D 0.37 TCGA-BR-8368-01 20 47872464 47872465 - T ZNFX1 Frame_Shift_Ins p.K896Efs*9 0.22 TCGA-BR-8368-01 20 49576279 49576279 C T MOCS3 Silent p.C300C 0.35 TCGA-BR-8368-01 20 51870903 51870903 A C TSHZ2 Missense_Mutation p.K302N 0.43 deleterious(0.03) probably_damaging(0.999) TCGA-BR-8368-01 20 54824313 54824313 C T MC3R Silent p.I138I 0.47 TCGA-BR-8368-01 20 57415590 57415590 C T RP4-806M20.3 5'Flank 0.37 TCGA-BR-8368-01 20 60508125 60508125 C T CDH4 Silent p.D774D 0.28 TCGA-BR-8368-01 20 6075585 6075585 C G FERMT1 Splice_Site p.X380_splice 0.32 TCGA-BR-8368-01 20 61870935 61870935 G C BIRC7 Missense_Mutation p.R292P 0.33 tolerated(0.17) possibly_damaging(0.463) TCGA-BR-8368-01 20 62044868 62044868 G A KCNQ2 Silent p.D566D 0.43 TCGA-BR-8368-01 20 9546559 9546559 C T PAK7 Missense_Mutation p.R488Q 0.36 deleterious(0) probably_damaging(1) TCGA-BR-8368-01 21 11039199 11039199 C A BAGE2 RNA 0.05 TCGA-BR-8368-01 21 22838932 22838932 G A NCAM2 Missense_Mutation p.V554I 0.44 tolerated(0.61) benign(0.122) TCGA-BR-8368-01 21 28315748 28315748 C T ADAMTS5 Nonsense_Mutation p.W452* 0.36 TCGA-BR-8368-01 21 28337871 28337871 C T ADAMTS5 Silent p.A280A 0.17 TCGA-BR-8368-01 21 30250634 30250634 C G N6AMT1 Missense_Mutation p.A140P 0.16 probably_damaging(0.957) TCGA-BR-8368-01 21 31852451 31852451 G A KRTAP19-1 Silent p.Y62Y 0.26 TCGA-BR-8368-01 21 31863890 31863890 A - KRTAP19-3 3'UTR 0.34 TCGA-BR-8368-01 21 34166443 34166443 G A C21orf62 Missense_Mutation p.T97M 0.42 deleterious(0) probably_damaging(0.983) TCGA-BR-8368-01 21 34399327 34399327 G A OLIG2 Missense_Mutation p.A53T 0.23 tolerated_low_confidence(0.14) benign(0.03) TCGA-BR-8368-01 21 35147278 35147278 A - ITSN1 Frame_Shift_Del p.K489Sfs*4 0.35 TCGA-BR-8368-01 21 39795450 39795450 G A ERG Silent p.G97G 0.50 TCGA-BR-8368-01 21 42771150 42771150 G A MX2 Missense_Mutation p.E434K 0.47 tolerated(0.89) possibly_damaging(0.751) TCGA-BR-8368-01 21 43708071 43708071 G A ABCG1 Missense_Mutation p.C349Y 0.36 tolerated(0.05) benign(0.142) TCGA-BR-8368-01 21 44520688 44520688 G A U2AF1 Intron 0.27 TCGA-BR-8368-01 21 45876981 45876981 G A LRRC3 Missense_Mutation p.A152T 0.25 tolerated(0.63) benign(0.017) TCGA-BR-8368-01 21 45953801 45953801 G A TSPEAR Silent p.N103N 0.27 TCGA-BR-8368-01 21 47546124 47546124 G A COL6A2 Missense_Mutation p.D799N 0.41 tolerated(0.09) probably_damaging(0.921) TCGA-BR-8368-01 22 17071787 17071787 T - CCT8L2 Frame_Shift_Del p.I552Sfs*4 0.37 TCGA-BR-8368-01 22 19967640 19967640 C T ARVCF Missense_Mutation p.R341Q 0.40 tolerated(0.07) probably_damaging(0.99) TCGA-BR-8368-01 22 20073637 20073637 G A DGCR8 Missense_Mutation p.V51I 0.32 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-BR-8368-01 22 22277735 22277735 G A PPM1F Silent p.V365V 0.40 TCGA-BR-8368-01 22 22842147 22842147 T A ZNF280B Missense_Mutation p.D526V 0.11 deleterious(0.04) possibly_damaging(0.824) TCGA-BR-8368-01 22 24122768 24122768 G T MMP11 Splice_Site p.X161_splice 0.43 TCGA-BR-8368-01 22 24176339 24176339 G A SMARCB1 Missense_Mutation p.R377H 0.35 deleterious(0) probably_damaging(0.999) TCGA-BR-8368-01 22 24584295 24584295 C T SUSD2 Missense_Mutation p.T815M 0.38 tolerated(0.25) benign(0.001) TCGA-BR-8368-01 22 24730508 24730508 A G SPECC1L Missense_Mutation p.T843A 0.12 deleterious(0.01) probably_damaging(0.993) TCGA-BR-8368-01 22 25308665 25308665 C - SGSM1 Frame_Shift_Del p.H1015Tfs*12 0.41 TCGA-BR-8368-01 22 29837513 29837513 T - RFPL1 Intron 0.33 TCGA-BR-8368-01 22 30762085 30762085 C T CCDC157 Silent p.A32A 0.31 TCGA-BR-8368-01 22 30812384 30812384 C A SEC14L2 Missense_Mutation p.P358H 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-BR-8368-01 22 30980667 30980667 C T PES1 Missense_Mutation p.D136N 0.14 tolerated(0.06) benign(0.212) TCGA-BR-8368-01 22 31032910 31032910 G A SLC35E4 Missense_Mutation p.R158H 0.33 tolerated(0.14) benign(0.009) TCGA-BR-8368-01 22 32589332 32589332 C - RFPL2 Intron 0.24 TCGA-BR-8368-01 22 36680233 36680233 C T MYH9 Missense_Mutation p.A1891T 0.37 possibly_damaging(0.844) TCGA-BR-8368-01 22 37637151 37637151 C T RAC2 Intron 0.47 TCGA-BR-8368-01 22 38340219 38340221 CTT - C22orf23 In_Frame_Del p.R206del 0.35 TCGA-BR-8368-01 22 38698968 38698970 GTT - CSNK1E In_Frame_Del p.N78del 0.43 TCGA-BR-8368-01 22 40417883 40417883 G A FAM83F Missense_Mutation p.A457T 0.23 tolerated_low_confidence(0.18) benign(0.004) TCGA-BR-8368-01 22 40661353 40661353 A - TNRC6B Frame_Shift_Del p.N375Mfs*7 0.33 TCGA-BR-8368-01 22 41918966 41918966 G A ACO2 Missense_Mutation p.R424H 0.40 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-BR-8368-01 22 42609415 42609415 C T TCF20 Missense_Mutation p.A633T 0.34 benign(0.012) TCGA-BR-8368-01 22 42611137 42611137 G A TCF20 Nonsense_Mutation p.R59* 0.36 TCGA-BR-8368-01 22 42972598 42972598 C T SERHL2 3'Flank 0.44 TCGA-BR-8368-01 22 45779402 45779402 T G SMC1B Missense_Mutation p.E668A 0.16 deleterious(0) probably_damaging(0.93) TCGA-BR-8368-01 22 46931661 46931661 G A CELSR1 Silent p.P469P 0.33 TCGA-BR-8368-01 22 50660293 50660293 G A TUBGCP6 Missense_Mutation p.P832L 0.37 tolerated(0.45) benign(0.002) TCGA-BR-8368-01 22 50750482 50750482 G A DENND6B 3'UTR 0.23 TCGA-BR-8368-01 22 50882697 50882697 G A PPP6R2 3'UTR 0.16 TCGA-BR-8368-01 22 51043425 51043425 C A MAPK8IP2 Missense_Mutation p.D565E 0.21 tolerated(1) benign(0.011) TCGA-BR-8368-01 2 105473199 105473199 A G POU3F3 Missense_Mutation p.T411A 0.29 deleterious(0) probably_damaging(0.993) TCGA-BR-8368-01 2 109389413 109389413 T - RANBP2 Frame_Shift_Del p.C2737Vfs*35 0.26 TCGA-BR-8368-01 2 112839024 112839024 T - TMEM87B Frame_Shift_Del p.L258Wfs*27 0.26 TCGA-BR-8368-01 2 113591057 113591057 C T IL1B Silent p.A65A 0.36 TCGA-BR-8368-01 2 113676235 113676235 C T IL37 Missense_Mutation p.S169L 0.37 deleterious(0.02) possibly_damaging(0.831) TCGA-BR-8368-01 2 11759033 11759033 C T GREB1 Silent p.S1344S 0.45 TCGA-BR-8368-01 2 11928551 11928551 C A LPIN1 Missense_Mutation p.A610E 0.30 deleterious(0) probably_damaging(0.913) TCGA-BR-8368-01 2 119915212 119915212 G A C1QL2 Missense_Mutation p.R212C 0.17 deleterious(0) probably_damaging(0.998) TCGA-BR-8368-01 2 119915381 119915381 G A C1QL2 Silent p.S155S 0.33 TCGA-BR-8368-01 2 121104067 121104067 C T INHBB Silent p.A101A 0.62 TCGA-BR-8368-01 2 121726317 121726317 C T GLI2 Missense_Mutation p.T224M 0.18 tolerated(0.14) probably_damaging(0.998) TCGA-BR-8368-01 2 128399650 128399650 C T LIMS2 Missense_Mutation p.A236T 0.41 deleterious(0.01) probably_damaging(0.972) TCGA-BR-8368-01 2 131883388 131883388 T C PLEKHB2 Missense_Mutation p.Y34H 0.40 deleterious(0) probably_damaging(0.997) TCGA-BR-8368-01 2 132275302 132275302 C T AC093838.4 Intron 0.48 TCGA-BR-8368-01 2 136566101 136566101 G A LCT Silent p.T1272T 0.34 TCGA-BR-8368-01 2 138738920 138738920 C T HNMT Intron 0.26 TCGA-BR-8368-01 2 143718233 143718233 T A KYNU Missense_Mutation p.I208N 0.28 deleterious(0) probably_damaging(1) TCGA-BR-8368-01 2 152324631 152324631 G A RIF1 Missense_Mutation p.V2240I 0.36 tolerated(0.32) benign(0.003) TCGA-BR-8368-01 2 15493765 15493765 C T NBAS Missense_Mutation p.R1334H 0.39 deleterious(0) possibly_damaging(0.906) TCGA-BR-8368-01 2 162274290 162274290 T - TBR1 Frame_Shift_Del p.Q267Kfs*43 0.13 TCGA-BR-8368-01 2 164467865 164467865 T C FIGN Silent p.T159T 0.35 TCGA-BR-8368-01 2 1652960 1652960 G - PXDN Frame_Shift_Del p.N865Mfs*25 0.38 TCGA-BR-8368-01 2 166848723 166848723 C A SCN1A Missense_Mutation p.G1688W 0.36 deleterious(0) probably_damaging(1) TCGA-BR-8368-01 2 166901611 166901611 C T SCN1A Missense_Mutation p.R535H 0.31 tolerated(0.25) benign(0.019) TCGA-BR-8368-01 2 167055185 167055185 T - SCN9A Frame_Shift_Del p.K1977Nfs*20 0.27 TCGA-BR-8368-01 2 167262855 167262855 A - SCN7A Frame_Shift_Del p.Q1429Kfs*57 0.11 TCGA-BR-8368-01 2 167327173 167327173 G T SCN7A Missense_Mutation p.Q206K 0.50 tolerated(0.08) benign(0.003) TCGA-BR-8368-01 2 170428529 170428530 - T FASTKD1 Frame_Shift_Ins p.T4Nfs*34 0.22 TCGA-BR-8368-01 2 170493804 170493804 A - PPIG Frame_Shift_Del p.K681Rfs*12 0.30 TCGA-BR-8368-01 2 171573014 171573014 G A SP5 Silent p.T99T 0.23 TCGA-BR-8368-01 2 171678601 171678601 C T GAD1 Silent p.Y29Y 0.42 TCGA-BR-8368-01 2 179452435 179452435 G A TTN Nonsense_Mutation p.R21201* 0.54 TCGA-BR-8368-01 2 179638766 179638766 C A TTN Missense_Mutation p.V2377F 0.50 TCGA-BR-8368-01 2 189953419 189953419 A G COL5A2 Splice_Site p.X215_splice 0.50 TCGA-BR-8368-01 2 197672333 197672333 A C C2orf66 Missense_Mutation p.L63R 0.32 deleterious(0) probably_damaging(0.998) TCGA-BR-8368-01 2 201943742 201943742 G A NDUFB3 Missense_Mutation p.G46D 0.33 tolerated(0.07) probably_damaging(0.978) TCGA-BR-8368-01 2 203383649 203383649 C T BMPR2 Silent p.N242N 0.36 TCGA-BR-8368-01 2 203848427 203848427 G A CARF 3'UTR 0.29 TCGA-BR-8368-01 2 206608102 206608102 G A NRP2 Silent p.Q489Q 0.30 TCGA-BR-8368-01 2 207655375 207655375 C T FASTKD2 Missense_Mutation p.R660W 0.30 deleterious(0) probably_damaging(1) TCGA-BR-8368-01 2 209104637 209104637 C T IDH1 Missense_Mutation p.R314H 0.41 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-BR-8368-01 2 210558967 210558967 T A MAP2 Silent p.G691G 0.35 TCGA-BR-8368-01 2 210588406 210588406 G A MAP2 Intron 0.43 TCGA-BR-8368-01 2 211306124 211306124 T C LANCL1 Missense_Mutation p.M151V 0.27 tolerated(0.06) benign(0.005) TCGA-BR-8368-01 2 21225676 21225676 C T APOB Silent p.G4206G 0.34 TCGA-BR-8368-01 2 216810399 216810399 A C MREG Missense_Mutation p.D135E 0.33 deleterious(0.05) probably_damaging(0.948) TCGA-BR-8368-01 2 219118720 219118720 G T ARPC2 3'UTR 0.34 TCGA-BR-8368-01 2 219227522 219227522 C T C2orf62 Missense_Mutation p.A176V 0.35 deleterious(0.03) probably_damaging(0.991) TCGA-BR-8368-01 2 220239647 220239648 - G DNPEP Frame_Shift_Ins p.Q446Pfs*28 0.18 TCGA-BR-8368-01 2 220418391 220418391 C T OBSL1 Missense_Mutation p.V1632M 0.26 tolerated(0.1) benign(0.432) TCGA-BR-8368-01 2 220428089 220428089 C T OBSL1 Missense_Mutation p.V890I 0.40 tolerated(0.41) benign(0.206) TCGA-BR-8368-01 2 223791818 223791818 C T ACSL3 Missense_Mutation p.T459M 0.28 deleterious(0) probably_damaging(1) TCGA-BR-8368-01 2 224463302 224463302 G T SCG2 Silent p.I233I 0.33 TCGA-BR-8368-01 2 231159024 231159025 - A SP140 Frame_Shift_Ins p.R673Efs*9 0.34 TCGA-BR-8368-01 2 233346298 233346298 G A ECEL1 Missense_Mutation p.T636M 0.37 deleterious(0.01) possibly_damaging(0.482) TCGA-BR-8368-01 2 234355371 234355371 G A DGKD Missense_Mutation p.A450T 0.09 tolerated(1) benign(0) TCGA-BR-8368-01 2 238277492 238277492 G A COL6A3 Silent p.D1538D 0.39 TCGA-BR-8368-01 2 238727072 238727072 A - RBM44 Frame_Shift_Del p.K506Nfs*27 0.23 TCGA-BR-8368-01 2 239157776 239157777 CT - PER2 Frame_Shift_Del p.Q1183Efs*29 0.21 TCGA-BR-8368-01 2 239353002 239353002 G A ASB1 Missense_Mutation p.V172I 0.38 tolerated(0.17) benign(0.026) TCGA-BR-8368-01 2 240981445 240981445 G A PRR21 Missense_Mutation p.R319W 0.31 deleterious_low_confidence(0) unknown(0) TCGA-BR-8368-01 2 241439508 241439508 C T ANKMY1 Silent p.T802T 0.33 TCGA-BR-8368-01 2 241712648 241712648 G A KIF1A Missense_Mutation p.R355C 0.31 deleterious(0.01) probably_damaging(0.975) TCGA-BR-8368-01 2 242170272 242170272 G A HDLBP Nonsense_Mutation p.Q1126* 0.25 TCGA-BR-8368-01 2 242186274 242186274 T - HDLBP Frame_Shift_Del p.I615Sfs*39 0.25 TCGA-BR-8368-01 2 24398355 24398355 T C FAM228A Silent p.A2A 0.48 TCGA-BR-8368-01 2 26101215 26101215 G - ASXL2 5'UTR 0.39 TCGA-BR-8368-01 2 27439841 27439841 T C ATRAID 3'UTR 0.24 TCGA-BR-8368-01 2 33002975 33002975 T C TTC27 Silent p.C569C 0.27 TCGA-BR-8368-01 2 3651971 3651971 T C COLEC11 Missense_Mutation p.L28P 0.36 deleterious(0) probably_damaging(1) TCGA-BR-8368-01 2 37132704 37132704 T C STRN Missense_Mutation p.Q157R 0.29 deleterious(0) possibly_damaging(0.739) TCGA-BR-8368-01 2 37873629 37873629 C T CDC42EP3 Silent p.P34P 0.10 TCGA-BR-8368-01 2 38298186 38298186 C T CYP1B1 Silent p.P437P 0.42 TCGA-BR-8368-01 2 42990345 42990345 G A OXER1 Silent p.S325S 0.31 TCGA-BR-8368-01 2 46386829 46386830 AA - PRKCE Frame_Shift_Del p.K669Rfs*3 0.31 TCGA-BR-8368-01 2 46986977 46986977 C G SOCS5 Missense_Mutation p.N436K 0.29 tolerated(0.24) probably_damaging(0.999) TCGA-BR-8368-01 2 53927569 53927569 C T ASB3 Silent p.S394S 0.31 TCGA-BR-8368-01 2 55254522 55254522 A G RTN4 Missense_Mutation p.L238P 0.34 deleterious(0.01) possibly_damaging(0.896) TCGA-BR-8368-01 2 61575023 61575028 TGGTGG - USP34 In_Frame_Del p.H759_H760del 0.37 TCGA-BR-8368-01 2 64331929 64331931 CTT - PELI1 In_Frame_Del p.R37del 0.40 TCGA-BR-8368-01 2 64685463 64685463 T C LGALSL Silent p.D140D 0.41 TCGA-BR-8368-01 2 67637232 67637232 T - ETAA1 3'UTR 0.26 TCGA-BR-8368-01 2 69577301 69577301 C T GFPT1 Missense_Mutation p.G252R 0.35 tolerated(0.29) benign(0.002) TCGA-BR-8368-01 2 70033528 70033528 C T ANXA4 Silent p.D68D 0.40 TCGA-BR-8368-01 2 70502205 70502205 G A PCYOX1 Silent p.L203L 0.09 TCGA-BR-8368-01 2 7137076 7137076 C T RNF144A Missense_Mutation p.R7W 0.14 deleterious_low_confidence(0) possibly_damaging(0.898) TCGA-BR-8368-01 2 71576560 71576560 G A ZNF638 Missense_Mutation p.R159H 0.35 deleterious(0) probably_damaging(0.999) TCGA-BR-8368-01 2 73477497 73477497 C T CCT7 Silent p.A378A 0.35 TCGA-BR-8368-01 2 86669239 86669239 C T KDM3A Silent p.A23A 0.36 TCGA-BR-8368-01 2 86705071 86705071 A G KDM3A Missense_Mutation p.N671D 0.38 deleterious(0) probably_damaging(0.993) TCGA-BR-8368-01 2 95537341 95537341 C T TEKT4 Missense_Mutation p.P6L 0.33 deleterious_low_confidence(0.02) benign(0.043) TCGA-BR-8368-01 2 98996645 98996645 C T CNGA3 Missense_Mutation p.R75C 0.36 tolerated(0.08) possibly_damaging(0.776) TCGA-BR-8368-01 2 99232795 99232795 T - UNC50 Frame_Shift_Del p.F178Sfs*7 0.28 TCGA-BR-8368-01 3 108409687 108409687 C T DZIP3 Silent p.H1190H 0.35 TCGA-BR-8368-01 3 109027898 109027898 C A DPPA2 Missense_Mutation p.R124M 0.36 deleterious(0.01) benign(0.041) TCGA-BR-8368-01 3 11383709 11383709 C A ATG7 Missense_Mutation p.L361I 0.32 deleterious(0.01) possibly_damaging(0.6) TCGA-BR-8368-01 3 119462963 119462963 C T MAATS1 Missense_Mutation p.R608W 0.36 deleterious(0) probably_damaging(1) TCGA-BR-8368-01 3 121838329 121838329 T - CD86 Frame_Shift_Del p.F314Lfs*18 0.21 TCGA-BR-8368-01 3 126724052 126724052 C T PLXNA1 Silent p.S621S 0.29 TCGA-BR-8368-01 3 126733355 126733355 C T PLXNA1 Missense_Mutation p.T880M 0.52 deleterious(0) probably_damaging(0.935) TCGA-BR-8368-01 3 129156137 129156137 T G MBD4 Missense_Mutation p.K117T 0.47 deleterious(0) probably_damaging(0.995) TCGA-BR-8368-01 3 131181447 131181447 A G MRPL3 3'UTR 0.38 TCGA-BR-8368-01 3 132193825 132193825 C T DNAJC13 Nonsense_Mutation p.R781* 0.24 TCGA-BR-8368-01 3 132211259 132211259 C T DNAJC13 Missense_Mutation p.R1209C 0.35 deleterious(0) possibly_damaging(0.71) TCGA-BR-8368-01 3 132322086 132322086 T - ACAD11 Frame_Shift_Del p.K536Nfs*34 0.28 TCGA-BR-8368-01 3 133329880 133329880 T - TOPBP1 Frame_Shift_Del p.I1381Sfs*61 0.34 TCGA-BR-8368-01 3 134090119 134090119 C A AMOTL2 Missense_Mutation p.A53S 0.37 tolerated(1) benign(0.059) TCGA-BR-8368-01 3 13544421 13544421 G A HDAC11 Missense_Mutation p.R197H 0.32 deleterious(0.02) possibly_damaging(0.903) TCGA-BR-8368-01 3 135721303 135721303 C A PPP2R3A Silent p.P321P 0.41 TCGA-BR-8368-01 3 13670507 13670507 C T FBLN2 Missense_Mutation p.A891V 0.38 tolerated(0.07) benign(0.138) TCGA-BR-8368-01 3 139077962 139077962 G T COPB2 Missense_Mutation p.L788I 0.39 tolerated(0.37) benign(0.224) TCGA-BR-8368-01 3 139090584 139090584 A G COPB2 Missense_Mutation p.W396R 0.34 deleterious(0) probably_damaging(1) TCGA-BR-8368-01 3 1394070 1394070 C A CNTN6 Nonsense_Mutation p.S476* 0.32 TCGA-BR-8368-01 3 14154633 14154633 G A CHCHD4 Silent p.S74S 0.25 TCGA-BR-8368-01 3 1445015 1445015 A G CNTN6 Silent p.R1000R 0.45 TCGA-BR-8368-01 3 14724408 14724408 C T C3orf20 Missense_Mutation p.P63L 0.25 tolerated(0.08) possibly_damaging(0.814) TCGA-BR-8368-01 3 149684096 149684097 - G PFN2 3'UTR 0.30 TCGA-BR-8368-01 3 151112597 151112598 - GCA MED12L In_Frame_Ins p.Q1892dup 0.28 TCGA-BR-8368-01 3 151599161 151599161 A G SUCNR1 Missense_Mutation p.Y277C 0.21 deleterious(0) probably_damaging(1) TCGA-BR-8368-01 3 15686554 15686554 G A BTD Silent p.E397E 0.27 TCGA-BR-8368-01 3 169572614 169572614 G A LRRC31 Silent p.D326D 0.36 TCGA-BR-8368-01 3 172351857 172351857 T - NCEH1 Frame_Shift_Del p.N252Ifs*8 0.22 TCGA-BR-8368-01 3 173999004 173999004 C T NLGN1 Missense_Mutation p.H795Y 0.33 deleterious_low_confidence(0) possibly_damaging(0.592) TCGA-BR-8368-01 3 184105718 184105718 G - CHRD Splice_Site p.X819_splice 0.30 TCGA-BR-8368-01 3 187416627 187416627 T A RTP2 Missense_Mutation p.N113Y 0.36 deleterious(0) probably_damaging(0.944) TCGA-BR-8368-01 3 196817823 196817823 C A DLG1 Missense_Mutation p.G574C 0.18 deleterious(0) probably_damaging(0.987) TCGA-BR-8368-01 3 197408185 197408185 A C KIAA0226 Missense_Mutation p.C749G 0.37 tolerated(0.38) probably_damaging(0.998) TCGA-BR-8368-01 3 24231679 24231679 G A THRB Missense_Mutation p.H57Y 0.07 tolerated_low_confidence(0.06) benign(0.002) TCGA-BR-8368-01 3 27216220 27216220 G T NEK10 Silent p.A870A 0.10 TCGA-BR-8368-01 3 33416811 33416811 G A FBXL2 Missense_Mutation p.C230Y 0.29 deleterious(0) possibly_damaging(0.905) TCGA-BR-8368-01 3 33633950 33633950 T C CLASP2 Missense_Mutation p.M670V 0.30 tolerated(0.78) benign(0) TCGA-BR-8368-01 3 38049968 38049968 C T PLCD1 Missense_Mutation p.R649Q 0.38 tolerated(0.56) benign(0.003) TCGA-BR-8368-01 3 38518857 38518857 C T ACVR2B Silent p.S44S 0.26 TCGA-BR-8368-01 3 38755487 38755487 G A SCN10A Missense_Mutation p.R1256W 0.08 deleterious(0) probably_damaging(0.991) TCGA-BR-8368-01 3 40442404 40442404 C T ENTPD3 Missense_Mutation p.A63V 0.30 deleterious(0) probably_damaging(0.997) TCGA-BR-8368-01 3 42739670 42739672 GAA - HHATL In_Frame_Del p.F219del 0.31 TCGA-BR-8368-01 3 44497024 44497024 C T ZNF445 Nonsense_Mutation p.W6* 0.41 TCGA-BR-8368-01 3 44893719 44893719 A C KIF15 Missense_Mutation p.K1331T 0.34 deleterious(0.02) benign(0.103) TCGA-BR-8368-01 3 45137008 45137008 G A CDCP1 Silent p.I359I 0.55 TCGA-BR-8368-01 3 49160436 49160436 C - LAMB2 Frame_Shift_Del p.G1425Vfs*27 0.20 TCGA-BR-8368-01 3 49161216 49161216 G A LAMB2 Missense_Mutation p.R1248C 0.40 deleterious(0.01) probably_damaging(0.931) TCGA-BR-8368-01 3 49850585 49850585 G A UBA7 Missense_Mutation p.A126V 0.57 tolerated(0.1) benign(0.41) TCGA-BR-8368-01 3 50231007 50231007 G A GNAT1 Silent p.S120S 0.29 TCGA-BR-8368-01 3 50324510 50324510 T C LSMEM2 Silent p.S124S 0.31 TCGA-BR-8368-01 3 50340261 50340261 A G HYAL1 Missense_Mutation p.C43R 0.49 deleterious(0) probably_damaging(1) TCGA-BR-8368-01 3 51990800 51990800 G A GPR62 3'UTR 0.29 TCGA-BR-8368-01 3 52786314 52786314 G T NEK4 Silent p.A334A 0.12 TCGA-BR-8368-01 3 56681079 56681079 A - FAM208A Frame_Shift_Del p.F562Lfs*21 0.21 TCGA-BR-8368-01 3 56789110 56789110 C T ARHGEF3 Missense_Mutation p.A124T 0.21 tolerated(0.27) benign(0.005) TCGA-BR-8368-01 3 58141774 58141774 C T FLNB Missense_Mutation p.A2318V 0.34 deleterious(0.02) probably_damaging(0.999) TCGA-BR-8368-01 3 71803351 71803351 C A GPR27 Missense_Mutation p.R51S 0.30 deleterious(0) possibly_damaging(0.683) TCGA-BR-8368-01 3 97611821 97611821 C T CRYBG3 Missense_Mutation p.R572C 0.42 deleterious(0) probably_damaging(0.982) TCGA-BR-8368-01 4 100479335 100479335 T - TRMT10A Frame_Shift_Del p.K73Nfs*2 0.31 TCGA-BR-8368-01 4 100738030 100738030 G A DAPP1 5'UTR 0.25 TCGA-BR-8368-01 4 1016196 1016196 C T FGFRL1 Silent p.G95G 0.17 TCGA-BR-8368-01 4 113570754 113570754 A - LARP7 Frame_Shift_Del p.T412Qfs*5 0.38 TCGA-BR-8368-01 4 123302332 123302332 A G ADAD1 Missense_Mutation p.T120A 0.21 tolerated(0.58) benign(0.291) TCGA-BR-8368-01 4 125591535 125591535 A - ANKRD50 Frame_Shift_Del p.L966* 0.31 TCGA-BR-8368-01 4 126238516 126238516 G A FAT4 Missense_Mutation p.R317H 0.27 probably_damaging(0.911) TCGA-BR-8368-01 4 145629414 145629414 A G HHIP Missense_Mutation p.T418A 0.33 tolerated(0.56) benign(0.057) TCGA-BR-8368-01 4 15067820 15067820 A G CPEB2 Missense_Mutation p.E974G 0.13 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BR-8368-01 4 155243618 155243618 C A DCHS2 Missense_Mutation p.K892N 0.24 deleterious(0.02) probably_damaging(0.973) TCGA-BR-8368-01 4 158142152 158142153 AA - GRIA2 5'UTR 0.38 TCGA-BR-8368-01 4 159756589 159756589 G T FNIP2 Nonsense_Mutation p.G230* 0.29 TCGA-BR-8368-01 4 166254715 166254715 T C MSMO1 Missense_Mutation p.F65L 0.36 tolerated(0.73) benign(0.001) TCGA-BR-8368-01 4 169013846 169013846 A G ANXA10 5'UTR 0.36 TCGA-BR-8368-01 4 183714323 183714323 C A TENM3 Missense_Mutation p.N2166K 0.33 deleterious(0.03) benign(0.003) TCGA-BR-8368-01 4 1980430 1980430 C A WHSC1 Missense_Mutation p.L1298I 0.33 tolerated(0.09) benign(0.007) TCGA-BR-8368-01 4 3042365 3042365 G A GRK4 3'UTR 0.47 TCGA-BR-8368-01 4 30726042 30726043 - C PCDH7 Frame_Shift_Ins p.L1002Ifs*45 0.27 TCGA-BR-8368-01 4 331751 331751 C T ZNF141 5'UTR 0.36 TCGA-BR-8368-01 4 39308307 39308307 A T RFC1 Missense_Mutation p.F635I 0.39 deleterious(0.02) benign(0.04) TCGA-BR-8368-01 4 41258982 41258982 C T UCHL1 5'UTR 0.37 TCGA-BR-8368-01 4 42088254 42088254 T - SLC30A9 3'UTR 0.27 TCGA-BR-8368-01 4 42403209 42403209 C A SHISA3 Missense_Mutation p.T153N 0.32 tolerated(0.09) benign(0.174) TCGA-BR-8368-01 4 4304738 4304739 AG - ZBTB49 Frame_Shift_Del p.R393Tfs*5 0.25 TCGA-BR-8368-01 4 47427857 47427857 G A GABRB1 Missense_Mutation p.R416H 0.41 tolerated(0.26) benign(0.077) TCGA-BR-8368-01 4 48859372 48859372 A - OCIAD1 Frame_Shift_Del p.E233Kfs*4 0.22 TCGA-BR-8368-01 4 56345050 56345050 C T CLOCK Missense_Mutation p.G63D 0.42 deleterious(0.03) probably_damaging(0.967) TCGA-BR-8368-01 4 6303935 6303935 C T WFS1 Missense_Mutation p.R805W 0.23 deleterious(0.01) probably_damaging(0.967) TCGA-BR-8368-01 4 6331024 6331024 G A PPP2R2C Silent p.F339F 0.29 TCGA-BR-8368-01 4 68688041 68688041 A T TMPRSS11D 3'UTR 0.14 TCGA-BR-8368-01 4 69696564 69696564 T C UGT2B10 Silent p.F518F 0.24 TCGA-BR-8368-01 4 69696601 69696601 T A UGT2B10 3'UTR 0.32 TCGA-BR-8368-01 4 72897770 72897770 G T NPFFR2 Missense_Mutation p.S51I 0.64 deleterious_low_confidence(0.02) benign(0) TCGA-BR-8368-01 4 76481344 76481344 G C C4orf26 Missense_Mutation p.V18L 0.36 deleterious_low_confidence(0) benign(0.198) TCGA-BR-8368-01 4 77663059 77663059 G A SHROOM3 Missense_Mutation p.A1245T 0.38 tolerated(1) benign(0.001) TCGA-BR-8368-01 4 85707176 85707176 G A WDFY3 Missense_Mutation p.R1340W 0.42 deleterious(0) probably_damaging(0.983) TCGA-BR-8368-01 4 87769943 87769943 C - SLC10A6 Frame_Shift_Del p.G109Afs*21 0.26 TCGA-BR-8368-01 4 88091723 88091723 A G KLHL8 Missense_Mutation p.I418T 0.36 deleterious(0) probably_damaging(0.978) TCGA-BR-8368-01 5 114552569 114552570 - C PGGT1B Frame_Shift_Ins p.S315Rfs*25 0.36 TCGA-BR-8368-01 5 118507479 118507479 T C DMXL1 Missense_Mutation p.S2166P 0.12 deleterious(0.05) benign(0.001) TCGA-BR-8368-01 5 121488779 121488779 A G ZNF474 Nonstop_Mutation p.*365Wext*37 0.50 TCGA-BR-8368-01 5 137593489 137593489 G A GFRA3 Silent p.A208A 0.37 TCGA-BR-8368-01 5 138715024 138715024 C A SLC23A1 Silent p.T319T 0.33 TCGA-BR-8368-01 5 139422136 139422136 C - NRG2 Frame_Shift_Del p.L174Cfs*6 0.31 TCGA-BR-8368-01 5 139886500 139886500 G A ANKHD1 Silent p.A1163A 0.33 TCGA-BR-8368-01 5 139938321 139938321 C A APBB3 Missense_Mutation p.R444L 0.28 deleterious(0.05) possibly_damaging(0.722) TCGA-BR-8368-01 5 140176039 140176039 G A PCDHA2 Missense_Mutation p.R497Q 0.39 deleterious_low_confidence(0.02) possibly_damaging(0.547) TCGA-BR-8368-01 5 140182650 140182650 G A PCDHA3 Missense_Mutation p.R623H 0.33 deleterious_low_confidence(0.01) benign(0.358) TCGA-BR-8368-01 5 140208784 140208784 G A PCDHA6 Missense_Mutation p.A370T 0.32 tolerated_low_confidence(0.09) possibly_damaging(0.731) TCGA-BR-8368-01 5 140215475 140215475 G A PCDHA7 Missense_Mutation p.A503T 0.30 tolerated_low_confidence(0.12) benign(0.104) TCGA-BR-8368-01 5 140256960 140256960 C T PCDHA12 Missense_Mutation p.R635C 0.37 deleterious_low_confidence(0) possibly_damaging(0.662) TCGA-BR-8368-01 5 140476279 140476279 C T PCDHB2 Silent p.R635R 0.39 TCGA-BR-8368-01 5 140536869 140536869 G A PCDHB17 Silent p.R431R 0.18 TCGA-BR-8368-01 5 140536956 140536956 C T PCDHB17 Silent p.F460F 0.37 TCGA-BR-8368-01 5 140553151 140553151 G A PCDHB7 Silent p.S245S 0.39 TCGA-BR-8368-01 5 140562820 140562820 G A PCDHB16 Missense_Mutation p.R229H 0.34 tolerated_low_confidence(0.42) benign(0.003) TCGA-BR-8368-01 5 140564112 140564112 G A PCDHB16 Missense_Mutation p.V660M 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.658) TCGA-BR-8368-01 5 140595831 140595831 G A PCDHB13 Silent p.R712R 0.33 TCGA-BR-8368-01 5 140627138 140627138 C T PCDHB15 Silent p.D664D 0.36 TCGA-BR-8368-01 5 140730146 140730146 G A PCDHGB1 Missense_Mutation p.A107T 0.43 tolerated(0.23) benign(0.131) TCGA-BR-8368-01 5 140735645 140735645 A C PCDHGA4 Missense_Mutation p.Q293P 0.41 deleterious_low_confidence(0.02) probably_damaging(0.932) TCGA-BR-8368-01 5 140736919 140736919 C T PCDHGA4 Missense_Mutation p.R718C 0.36 deleterious_low_confidence(0.01) benign(0.049) TCGA-BR-8368-01 5 140739977 140739977 G A PCDHGB2 Missense_Mutation p.R92Q 0.32 deleterious(0) probably_damaging(0.969) TCGA-BR-8368-01 5 140745880 140745880 C T PCDHGA5 Silent p.T661T 0.36 TCGA-BR-8368-01 5 140746290 140746290 A C PCDHGA5 Missense_Mutation p.D798A 0.34 tolerated_low_confidence(0.76) benign(0) TCGA-BR-8368-01 5 140754085 140754085 C T PCDHGA6 Silent p.N145N 0.30 TCGA-BR-8368-01 5 140755360 140755360 C T PCDHGA6 Silent p.D570D 0.30 TCGA-BR-8368-01 5 140811976 140811976 G C PCDHGA12 Silent p.L550L 0.29 TCGA-BR-8368-01 5 140812146 140812146 G A PCDHGA12 Missense_Mutation p.R607H 0.36 tolerated_low_confidence(0.13) benign(0.103) TCGA-BR-8368-01 5 140856225 140856225 C T PCDHGC3 Missense_Mutation p.A181V 0.44 tolerated(0.32) benign(0.096) TCGA-BR-8368-01 5 14482694 14482694 A - TRIO Frame_Shift_Del p.I2158Sfs*63 0.23 TCGA-BR-8368-01 5 14711209 14711209 A - ANKH 3'UTR 0.41 TCGA-BR-8368-01 5 14711276 14711276 G A ANKH 3'UTR 0.40 TCGA-BR-8368-01 5 147261725 147261725 G A SCGB3A2 3'UTR 0.54 TCGA-BR-8368-01 5 148619396 148619396 C T ABLIM3 Silent p.S383S 0.31 TCGA-BR-8368-01 5 150400298 150400298 C T GPX3 Missense_Mutation p.S28L 0.31 tolerated(0.4) benign(0.054) TCGA-BR-8368-01 5 151183470 151183470 C T G3BP1 Missense_Mutation p.R407C 0.34 deleterious(0.03) benign(0.001) TCGA-BR-8368-01 5 159776035 159776035 A - C1QTNF2 3'UTR 0.30 TCGA-BR-8368-01 5 167379678 167379678 C T TENM2 Silent p.S266S 0.28 TCGA-BR-8368-01 5 168096798 168096798 G C SLIT3 Missense_Mutation p.H1442Q 0.25 tolerated(0.3) benign(0.433) TCGA-BR-8368-01 5 177547405 177547405 C A N4BP3 Missense_Mutation p.P186H 0.06 tolerated(0.18) benign(0.011) TCGA-BR-8368-01 5 178310319 178310319 T C ZNF354B Missense_Mutation p.L289S 0.26 tolerated(0.05) benign(0.185) TCGA-BR-8368-01 5 178410024 178410024 C T GRM6 Missense_Mutation p.V775M 0.38 deleterious(0.04) possibly_damaging(0.832) TCGA-BR-8368-01 5 179302056 179302056 C T TBC1D9B Missense_Mutation p.V678I 0.28 tolerated(0.2) probably_damaging(0.969) TCGA-BR-8368-01 5 31297469 31297469 C A CDH6 Nonsense_Mutation p.Y199* 0.30 TCGA-BR-8368-01 5 35991394 35991394 C T UGT3A1 5'UTR 0.32 TCGA-BR-8368-01 5 40716477 40716477 T - TTC33 Frame_Shift_Del p.S187Vfs*7 0.24 TCGA-BR-8368-01 5 464452 464452 C T EXOC3 Silent p.N567N 0.35 TCGA-BR-8368-01 5 52194127 52194127 A G ITGA1 Missense_Mutation p.Q408R 0.32 tolerated(0.07) benign(0.273) TCGA-BR-8368-01 5 53815059 53815059 G A SNX18 Missense_Mutation p.S426N 0.34 tolerated(0.11) benign(0.245) TCGA-BR-8368-01 5 56209750 56209750 A G SETD9 Missense_Mutation p.T214A 0.33 deleterious(0.02) possibly_damaging(0.556) TCGA-BR-8368-01 5 57753012 57753012 A - PLK2 Frame_Shift_Del p.L335Cfs*68 0.29 TCGA-BR-8368-01 5 63256737 63256744 CTTGCTCT - HTR1A Frame_Shift_Del p.E268Gfs*15 0.15 TCGA-BR-8368-01 5 72801128 72801128 C T BTF3 3'UTR 0.23 TCGA-BR-8368-01 5 79970914 79970915 - A MSH3 Frame_Shift_Ins p.N385Qfs*19 0.32 TCGA-BR-8368-01 5 82835591 82835591 G T VCAN Nonsense_Mutation p.G2257* 0.33 TCGA-BR-8368-01 5 93076993 93076993 G A POU5F2 Nonsense_Mutation p.R93* 0.70 TCGA-BR-8368-01 6 105606265 105606265 T - POPDC3 3'UTR 0.29 TCGA-BR-8368-01 6 107389968 107389968 G A BEND3 Silent p.C809C 0.35 TCGA-BR-8368-01 6 107955723 107955723 G A SOBP Missense_Mutation p.G559R 0.31 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-BR-8368-01 6 110300781 110300781 G A GPR6 Missense_Mutation p.V156I 0.08 tolerated(0.19) benign(0.03) TCGA-BR-8368-01 6 116288822 116288822 G A FRK Missense_Mutation p.R231C 0.37 deleterious(0) probably_damaging(0.999) TCGA-BR-8368-01 6 125584128 125584128 G A TPD52L1 3'UTR 0.29 TCGA-BR-8368-01 6 127836907 127836907 C T SOGA3 Missense_Mutation p.G285S 0.43 tolerated(0.24) possibly_damaging(0.862) TCGA-BR-8368-01 6 129835564 129835564 A G LAMA2 Missense_Mutation p.Y3012C 0.37 deleterious(0) probably_damaging(0.995) TCGA-BR-8368-01 6 132031982 132031982 A - CTAGE9 Frame_Shift_Del p.L59Cfs*27 0.15 TCGA-BR-8368-01 6 134349555 134349555 C T SLC2A12 Missense_Mutation p.V470I 0.33 tolerated(0.12) benign(0.053) TCGA-BR-8368-01 6 134492026 134492028 AGA - SGK1 In_Frame_Del p.F450del 0.31 TCGA-BR-8368-01 6 134583282 134583282 C T SGK1 Missense_Mutation p.R25Q 0.31 deleterious_low_confidence(0.01) benign(0.041) TCGA-BR-8368-01 6 136597275 136597275 T C BCLAF1 Missense_Mutation p.E463G 0.17 tolerated(0.19) possibly_damaging(0.607) TCGA-BR-8368-01 6 136597290 136597290 T - BCLAF1 Frame_Shift_Del p.N458Ifs*10 0.14 TCGA-BR-8368-01 6 136599781 136599781 A G BCLAF1 Missense_Mutation p.Y80H 0.22 deleterious_low_confidence(0) unknown(0) TCGA-BR-8368-01 6 137815416 137815416 G A OLIG3 5'UTR 0.27 TCGA-BR-8368-01 6 139487628 139487628 G A HECA Missense_Mutation p.R160H 0.32 tolerated(0.06) benign(0.38) TCGA-BR-8368-01 6 151790162 151790162 C T C6orf211 Nonsense_Mutation p.Q415* 0.28 TCGA-BR-8368-01 6 152332821 152332821 T C ESR1 Missense_Mutation p.V376A 0.36 deleterious(0.01) possibly_damaging(0.858) TCGA-BR-8368-01 6 152477160 152477160 G A SYNE1 Missense_Mutation p.H7955Y 0.09 probably_damaging(0.998) TCGA-BR-8368-01 6 158914725 158914725 G A TULP4 Silent p.E584E 0.35 TCGA-BR-8368-01 6 159029369 159029369 G A TMEM181 Silent p.P363P 0.43 TCGA-BR-8368-01 6 160829897 160829897 G A SLC22A3 Nonsense_Mutation p.W267* 0.29 TCGA-BR-8368-01 6 160864677 160864677 G A SLC22A3 Silent p.S471S 0.38 TCGA-BR-8368-01 6 167752266 167752266 G A TTLL2 Missense_Mutation p.R60H 0.14 tolerated_low_confidence(0.6) benign(0.031) TCGA-BR-8368-01 6 168457809 168457809 C T FRMD1 Missense_Mutation p.G540R 0.54 tolerated(0.25) benign(0.029) TCGA-BR-8368-01 6 18208403 18208403 C A KDM1B Missense_Mutation p.T379N 0.71 deleterious(0.04) unknown(0) TCGA-BR-8368-01 6 27223105 27223105 C T PRSS16 3'UTR 0.33 TCGA-BR-8368-01 6 27420689 27420689 T A ZNF184 Nonsense_Mutation p.K217* 0.71 TCGA-BR-8368-01 6 29364789 29364789 C T OR12D2 Silent p.L105L 0.65 TCGA-BR-8368-01 6 29912057 29912057 G C HLA-A Missense_Mutation p.A260P 0.17 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-BR-8368-01 6 30621048 30621048 T - DHX16 Frame_Shift_Del p.I1033* 0.42 TCGA-BR-8368-01 6 31746992 31746992 C T VARS Missense_Mutation p.A1160T 0.88 tolerated(0.45) benign(0.001) TCGA-BR-8368-01 6 33133371 33133371 G A COL11A2 Missense_Mutation p.R1483C 0.12 unknown(0) TCGA-BR-8368-01 6 3324124 3324124 C T SLC22A23 Nonsense_Mutation p.W342* 0.68 TCGA-BR-8368-01 6 33289268 33289268 G A DAXX Missense_Mutation p.A95V 0.28 deleterious(0) possibly_damaging(0.859) TCGA-BR-8368-01 6 33662760 33662760 C T ITPR3 Silent p.G2615G 0.48 TCGA-BR-8368-01 6 4032412 4032412 A - PRPF4B Frame_Shift_Del p.K222Nfs*59 0.19 TCGA-BR-8368-01 6 40399690 40399690 C T LRFN2 Missense_Mutation p.R388H 0.27 tolerated(0.59) benign(0.006) TCGA-BR-8368-01 6 41533594 41533594 C T FOXP4 Silent p.G32G 0.36 TCGA-BR-8368-01 6 42986249 42986249 C - KLHDC3 Frame_Shift_Del p.P231Rfs*31 0.28 TCGA-BR-8368-01 6 43190359 43190359 G T CUL9 Nonsense_Mutation p.G2338* 0.35 TCGA-BR-8368-01 6 43475221 43475222 CT - LRRC73 Frame_Shift_Del p.G285Qfs*28 0.24 TCGA-BR-8368-01 6 47200390 47200390 C A TNFRSF21 3'UTR 0.38 TCGA-BR-8368-01 6 53519514 53519514 T - KLHL31 Frame_Shift_Del p.N186Mfs*24 0.09 TCGA-BR-8368-01 6 53787708 53787708 C T LRRC1 3'UTR 0.34 TCGA-BR-8368-01 6 69759195 69759195 G A BAI3 Missense_Mutation p.A764T 0.39 tolerated(0.94) benign(0.006) TCGA-BR-8368-01 6 71571627 71571627 C T B3GAT2 Missense_Mutation p.R264H 0.38 tolerated(0.54) probably_damaging(0.961) TCGA-BR-8368-01 6 72892034 72892034 A G RIMS1 Missense_Mutation p.K287R 0.26 tolerated(1) benign(0.005) TCGA-BR-8368-01 6 72892074 72892074 C T RIMS1 Silent p.P300P 0.38 TCGA-BR-8368-01 6 73834307 73834307 A G KCNQ5 Intron 0.38 TCGA-BR-8368-01 6 83075087 83075087 G A TPBG Missense_Mutation p.A137T 0.13 tolerated(0.32) possibly_damaging(0.532) TCGA-BR-8368-01 6 85446535 85446535 C T TBX18 Silent p.T564T 0.40 TCGA-BR-8368-01 6 89895130 89895130 T - GABRR1 Frame_Shift_Del p.K232Rfs*6 0.30 TCGA-BR-8368-01 6 90097168 90097168 G A RRAGD Missense_Mutation p.T97I 0.39 deleterious(0) probably_damaging(0.996) TCGA-BR-8368-01 6 96034484 96034484 A G MANEA Missense_Mutation p.K57E 0.05 tolerated(0.34) benign(0.157) TCGA-BR-8368-01 6 99848984 99848984 C T PNISR Missense_Mutation p.R617H 0.14 deleterious_low_confidence(0) possibly_damaging(0.715) TCGA-BR-8368-01 7 100086494 100086494 C - NYAP1 Frame_Shift_Del p.P385Hfs*46 0.19 TCGA-BR-8368-01 7 100161926 100161926 G T AGFG2 Missense_Mutation p.M462I 0.39 deleterious(0.01) benign(0.064) TCGA-BR-8368-01 7 100452000 100452000 G - SLC12A9 Frame_Shift_Del 0.27 TCGA-BR-8368-01 7 100491560 100491560 A G ACHE Silent p.S98S 0.25 TCGA-BR-8368-01 7 100553011 100553011 C T MUC3A Silent p.C552C 0.16 TCGA-BR-8368-01 7 100803898 100803898 C T AP1S1 3'UTR 0.25 TCGA-BR-8368-01 7 100855927 100855927 G - PLOD3 Frame_Shift_Del p.R297Gfs*61 0.29 TCGA-BR-8368-01 7 102566738 102566738 C T FBXL13 Silent p.T287T 0.33 TCGA-BR-8368-01 7 107706348 107706348 A G LAMB4 Missense_Mutation p.Y899H 0.41 deleterious(0.02) probably_damaging(1) TCGA-BR-8368-01 7 119914694 119914694 C T KCND2 Missense_Mutation p.A3V 0.06 deleterious_low_confidence(0.03) probably_damaging(0.909) TCGA-BR-8368-01 7 123267185 123267185 C T ASB15 Missense_Mutation p.A240V 0.43 deleterious(0) probably_damaging(0.963) TCGA-BR-8368-01 7 127231354 127231354 C G ARF5 3'UTR 0.35 TCGA-BR-8368-01 7 12727861 12727861 C T ARL4A 5'UTR 0.33 TCGA-BR-8368-01 7 1275553 1275553 C T UNCX Missense_Mutation p.P179L 0.20 deleterious(0.02) benign(0.299) TCGA-BR-8368-01 7 127894705 127894705 G - LEP Frame_Shift_Del p.G133Vfs*15 0.27 TCGA-BR-8368-01 7 128370003 128370003 C T FAM71F1 Missense_Mutation p.R301C 0.38 tolerated(0.14) possibly_damaging(0.634) TCGA-BR-8368-01 7 128470903 128470903 T C FLNC Missense_Mutation p.I71T 0.38 deleterious(0) probably_damaging(0.993) TCGA-BR-8368-01 7 132192848 132192848 C T PLXNA4 Missense_Mutation p.R202Q 0.40 deleterious(0) probably_damaging(1) TCGA-BR-8368-01 7 137293790 137293790 A G DGKI Silent p.P363P 0.38 TCGA-BR-8368-01 7 139719830 139719830 G A TBXAS1 Silent p.P558P 0.27 TCGA-BR-8368-01 7 139833448 139833448 T - KDM7A Frame_Shift_Del p.R97Gfs*41 0.28 TCGA-BR-8368-01 7 141747660 141747660 T C MGAM Silent p.N858N 0.35 TCGA-BR-8368-01 7 142021265 142021265 G A TRBV5-1 Missense_Mutation p.R82Q 0.31 deleterious(0.01) possibly_damaging(0.788) TCGA-BR-8368-01 7 142583277 142583277 C T TRPV6 5'UTR 0.16 TCGA-BR-8368-01 7 142622641 142622641 G A TRPV5 Nonsense_Mutation p.Q369* 0.33 TCGA-BR-8368-01 7 148485743 148485743 T C CUL1 Missense_Mutation p.L525S 0.30 deleterious(0.02) possibly_damaging(0.722) TCGA-BR-8368-01 7 148495753 148495753 G A CUL1 Missense_Mutation p.R707H 0.38 deleterious(0) probably_damaging(0.991) TCGA-BR-8368-01 7 148921307 148921307 C T ZNF282 Silent p.G528G 0.29 TCGA-BR-8368-01 7 1518141 1518141 C T INTS1 Silent p.V1497V 0.28 TCGA-BR-8368-01 7 155493520 155493520 A T RBM33 Missense_Mutation p.E207D 0.41 tolerated(0.15) benign(0.395) TCGA-BR-8368-01 7 1997266 1997266 G C MAD1L1 Missense_Mutation p.Q532E 0.31 deleterious(0) possibly_damaging(0.777) TCGA-BR-8368-01 7 20825187 20825187 C T SP8 Silent p.S83S 0.64 TCGA-BR-8368-01 7 27169037 27169037 C T HOXA4 Missense_Mutation p.R257H 0.37 deleterious(0) probably_damaging(0.999) TCGA-BR-8368-01 7 27285699 27285699 C A EVX1 Silent p.A293A 0.32 TCGA-BR-8368-01 7 36194777 36194777 C T EEPD1 Nonsense_Mutation p.R282* 0.46 TCGA-BR-8368-01 7 38502690 38502690 G A AMPH Missense_Mutation p.A258V 0.40 tolerated(0.17) benign(0.049) TCGA-BR-8368-01 7 4002384 4002384 C T SDK1 Missense_Mutation p.R444C 0.80 deleterious(0.04) possibly_damaging(0.773) TCGA-BR-8368-01 7 44040752 44040754 AGA - SPDYE1 In_Frame_Del p.K44del 0.11 TCGA-BR-8368-01 7 47463773 47463773 C A TNS3 Missense_Mutation p.Q133H 0.40 deleterious(0) probably_damaging(0.999) TCGA-BR-8368-01 7 48147888 48147888 C T UPP1 Silent p.S289S 0.43 TCGA-BR-8368-01 7 55479744 55479744 G A LANCL2 Missense_Mutation p.A324T 0.41 deleterious(0) probably_damaging(1) TCGA-BR-8368-01 7 56062600 56062600 C T GBAS Missense_Mutation p.R211C 0.31 deleterious(0) probably_damaging(0.953) TCGA-BR-8368-01 7 62752299 62752299 G A ZNF733P RNA 0.38 TCGA-BR-8368-01 7 6838127 6838127 G A RSPH10B2 Missense_Mutation p.V856M 0.33 tolerated(0.05) benign(0.032) TCGA-BR-8368-01 7 75608843 75608843 C T POR Silent p.D104D 0.44 TCGA-BR-8368-01 7 77247840 77247840 A - PTPN12 Frame_Shift_Del p.K329Nfs*38 0.29 TCGA-BR-8368-01 7 77789517 77789517 G A MAGI2 Silent p.Y890Y 0.42 TCGA-BR-8368-01 7 81599268 81599268 G A CACNA2D1 Missense_Mutation p.T746I 0.15 tolerated(0.06) probably_damaging(0.999) TCGA-BR-8368-01 7 82582944 82582944 T - PCLO Frame_Shift_Del p.K2442Sfs*2 0.50 TCGA-BR-8368-01 7 86522242 86522242 G A KIAA1324L Nonsense_Mutation p.Q954* 0.42 TCGA-BR-8368-01 7 86978480 86978480 A - CROT Frame_Shift_Del p.K34Nfs*13 0.26 TCGA-BR-8368-01 7 92118635 92118635 C T PEX1 Missense_Mutation p.E1247K 0.41 tolerated(0.38) benign(0.005) TCGA-BR-8368-01 7 92161811 92161811 A - RBM48 Frame_Shift_Del p.K134Nfs*9 0.24 TCGA-BR-8368-01 7 92164141 92164141 C T RBM48 Missense_Mutation p.R292C 0.36 tolerated(0.23) benign(0.022) TCGA-BR-8368-01 7 92844875 92844875 T - HEPACAM2 Frame_Shift_Del p.N185Mfs*25 0.30 TCGA-BR-8368-01 7 94174999 94174999 A - CASD1 Frame_Shift_Del p.A543Qfs*13 0.36 TCGA-BR-8368-01 7 99779803 99779803 G A STAG3 Silent p.P69P 0.35 TCGA-BR-8368-01 7 99799008 99799008 G - GATS 3'UTR 0.14 TCGA-BR-8368-01 7 99950702 99950705 TGAC - PILRB 5'UTR 0.41 TCGA-BR-8368-01 8 104414250 104414250 A G SLC25A32 Silent p.H195H 0.31 TCGA-BR-8368-01 8 10466439 10466439 G T RP1L1 Silent p.V1723V 0.04 TCGA-BR-8368-01 8 105025741 105025741 G A RIMS2 Missense_Mutation p.R1039Q 0.23 deleterious_low_confidence(0.02) benign(0.027) TCGA-BR-8368-01 8 105456608 105456608 G A DPYS Missense_Mutation p.R221C 0.26 deleterious(0) probably_damaging(0.998) TCGA-BR-8368-01 8 10583237 10583237 C T SOX7 3'UTR 0.29 TCGA-BR-8368-01 8 107695429 107695429 T C OXR1 Silent p.V103V 0.32 TCGA-BR-8368-01 8 109214102 109214102 C T EIF3E 3'UTR 0.48 TCGA-BR-8368-01 8 11058241 11058241 C G XKR6 Missense_Mutation p.G203A 0.19 tolerated(0.31) benign(0.038) TCGA-BR-8368-01 8 11301796 11301796 C T FAM167A Missense_Mutation p.R42H 0.30 deleterious(0) probably_damaging(0.999) TCGA-BR-8368-01 8 114449139 114449141 TGT - CSMD3 5'UTR 0.13 TCGA-BR-8368-01 8 123965245 123965245 G A ZHX2 Missense_Mutation p.V499I 0.34 tolerated(0.21) possibly_damaging(0.606) TCGA-BR-8368-01 8 124812010 124812010 A G FAM91A1 Splice_Site p.X566_splice 0.33 TCGA-BR-8368-01 8 125015462 125015462 T C FER1L6 Silent p.A525A 0.29 TCGA-BR-8368-01 8 12957359 12957359 G - DLC1 Frame_Shift_Del p.S830Rfs*7 0.13 TCGA-BR-8368-01 8 133196585 133196585 G A KCNQ3 Silent p.A169A 0.29 TCGA-BR-8368-01 8 134225170 134225170 C T WISP1 Missense_Mutation p.R45C 0.19 deleterious(0.01) probably_damaging(0.912) TCGA-BR-8368-01 8 134239807 134239807 G A WISP1 Missense_Mutation p.V320M 0.21 tolerated(0.05) possibly_damaging(0.737) TCGA-BR-8368-01 8 139833454 139833454 G A COL22A1 Silent p.I390I 0.22 TCGA-BR-8368-01 8 140714992 140714992 C T KCNK9 Missense_Mutation p.G82S 0.20 deleterious(0) probably_damaging(0.983) TCGA-BR-8368-01 8 143570413 143570413 G A BAI1 Missense_Mutation p.V824M 0.29 tolerated(0.05) possibly_damaging(0.867) TCGA-BR-8368-01 8 144621235 144621235 C - ZC3H3 Frame_Shift_Del p.G101Afs*102 0.30 TCGA-BR-8368-01 8 144946750 144946750 C T EPPK1 Silent p.S224S 0.11 TCGA-BR-8368-01 8 144990725 144990725 C T PLEC Missense_Mutation p.A4559T 0.24 probably_damaging(1) TCGA-BR-8368-01 8 144991258 144991258 C T PLEC Missense_Mutation p.R4381H 0.34 probably_damaging(0.999) TCGA-BR-8368-01 8 145003355 145003355 G T PLEC Missense_Mutation p.A1196E 0.29 unknown(0) TCGA-BR-8368-01 8 145011331 145011331 A T PLEC Splice_Site p.X251_splice 0.23 TCGA-BR-8368-01 8 145095783 145095784 - C SPATC1 Frame_Shift_Ins p.H363Pfs*8 0.28 TCGA-BR-8368-01 8 145109541 145109542 - G OPLAH Frame_Shift_Ins p.H870Pfs*92 0.16 TCGA-BR-8368-01 8 145139999 145139999 C T GPAA1 Silent p.P406P 0.09 TCGA-BR-8368-01 8 145151105 145151105 G A CYC1 Silent p.L135L 0.27 TCGA-BR-8368-01 8 145161313 145161313 A C MAF1 Missense_Mutation p.Q149P 0.39 tolerated(0.34) benign(0.008) TCGA-BR-8368-01 8 145541626 145541626 C T DGAT1 Missense_Mutation p.R269H 0.27 deleterious(0) probably_damaging(0.999) TCGA-BR-8368-01 8 145692659 145692659 G - KIFC2 Frame_Shift_Del p.R137Gfs*73 0.25 TCGA-BR-8368-01 8 145831053 145831053 C T ARHGAP39 5'UTR 0.14 TCGA-BR-8368-01 8 145998594 145998595 - G ZNF34 3'UTR 0.20 TCGA-BR-8368-01 8 17412535 17412538 GAGT - SLC7A2 Intron 0.25 TCGA-BR-8368-01 8 17824624 17824624 G A PCM1 Silent p.Q1119Q 0.45 TCGA-BR-8368-01 8 1841732 1841732 C T ARHGEF10 Intron 0.32 TCGA-BR-8368-01 8 18490296 18490296 T - PSD3 Frame_Shift_Del p.K746Sfs*73 0.26 TCGA-BR-8368-01 8 18541569 18541569 G A PSD3 Intron 0.29 TCGA-BR-8368-01 8 195449 195449 G T ZNF596 Missense_Mutation p.G201V 0.26 deleterious(0.01) possibly_damaging(0.838) TCGA-BR-8368-01 8 21938939 21938939 C T DMTN Missense_Mutation p.R395W 0.19 deleterious(0) probably_damaging(1) TCGA-BR-8368-01 8 22005888 22005888 G A LGI3 Missense_Mutation p.R478C 0.33 tolerated(0.06) possibly_damaging(0.817) TCGA-BR-8368-01 8 22054887 22054887 C T BMP1 Silent p.S687S 0.23 TCGA-BR-8368-01 8 22067038 22067038 G - BMP1 Frame_Shift_Del p.G887Vfs*70 0.19 TCGA-BR-8368-01 8 22102667 22102667 A G POLR3D 5'Flank 0.25 TCGA-BR-8368-01 8 22175773 22175773 A - PIWIL2 Frame_Shift_Del p.K798Sfs*5 0.12 TCGA-BR-8368-01 8 24257686 24257686 A - ADAMDEC1 Frame_Shift_Del p.K341Rfs*7 0.38 TCGA-BR-8368-01 8 24771385 24771385 G A NEFM Missense_Mutation p.V27I 0.28 tolerated(0.49) unknown(0) TCGA-BR-8368-01 8 27097502 27097502 G A STMN4 Missense_Mutation p.R193W 0.21 deleterious(0.02) probably_damaging(1) TCGA-BR-8368-01 8 27145048 27145048 G A TRIM35 3'UTR 0.50 TCGA-BR-8368-01 8 27320682 27320682 T C CHRNA2 Silent p.A426A 0.22 TCGA-BR-8368-01 8 28385158 28385159 - T FZD3 Frame_Shift_Ins p.T297Yfs*25 0.25 TCGA-BR-8368-01 8 28967542 28967542 C T KIF13B Missense_Mutation p.A1326T 0.31 tolerated(0.05) benign(0.31) TCGA-BR-8368-01 8 30511088 30511088 C A GTF2E2 Nonsense_Mutation p.E10* 0.25 TCGA-BR-8368-01 8 30889510 30889510 C T PURG Silent p.E263E 0.33 TCGA-BR-8368-01 8 32613965 32613965 G A NRG1 Missense_Mutation p.R288Q 0.29 tolerated(0.43) probably_damaging(0.977) TCGA-BR-8368-01 8 35425752 35425752 C T UNC5D Silent p.R153R 0.11 TCGA-BR-8368-01 8 38111155 38111155 G A DDHD2 Missense_Mutation p.R658H 0.22 deleterious(0) probably_damaging(1) TCGA-BR-8368-01 8 38123659 38123659 C A PPAPDC1B Missense_Mutation p.D212Y 0.13 deleterious(0) probably_damaging(0.999) TCGA-BR-8368-01 8 38187221 38187222 - T WHSC1L1 Frame_Shift_Ins p.T419Nfs*28 0.27 TCGA-BR-8368-01 8 38835654 38835654 T C HTRA4 Silent p.D318D 0.20 TCGA-BR-8368-01 8 38853837 38853837 T G TM2D2 Missense_Mutation p.E41A 0.28 tolerated_low_confidence(0.68) benign(0.011) TCGA-BR-8368-01 8 38961220 38961220 T - ADAM9 3'UTR 0.21 TCGA-BR-8368-01 8 41551521 41551521 G A ANK1 Missense_Mutation p.R1184C 0.22 deleterious(0) possibly_damaging(0.88) TCGA-BR-8368-01 8 41583411 41583411 G A ANK1 Silent p.V193V 0.40 TCGA-BR-8368-01 8 41836195 41836195 T C KAT6A Silent p.G336G 0.03 TCGA-BR-8368-01 8 42587570 42587571 - A CHRNB3 Frame_Shift_Ins p.K377Efs*6 0.23 TCGA-BR-8368-01 8 48511719 48511720 - G SPIDR Frame_Shift_Ins p.A504Gfs*26 0.30 TCGA-BR-8368-01 8 52321634 52321634 G A PXDNL Silent p.A850A 0.18 TCGA-BR-8368-01 8 52325815 52325815 A G PXDNL Missense_Mutation p.I600T 0.27 tolerated(0.75) benign(0.004) TCGA-BR-8368-01 8 53853444 53853444 C T NPBWR1 Missense_Mutation p.A326V 0.16 tolerated(0.29) benign(0.038) TCGA-BR-8368-01 8 57025712 57025712 G A MOS Missense_Mutation p.A277V 0.27 tolerated(0.36) benign(0.005) TCGA-BR-8368-01 8 61769043 61769043 A C CHD7 Silent p.R2402R 0.15 TCGA-BR-8368-01 8 6299603 6299603 A G MCPH1 Missense_Mutation p.Q199R 0.28 deleterious(0.01) benign(0.08) TCGA-BR-8368-01 8 70982108 70982108 C T PRDM14 5'UTR 0.27 TCGA-BR-8368-01 8 72211325 72211325 C T EYA1 Silent p.P261P 0.20 TCGA-BR-8368-01 8 72756093 72756093 C T MSC Silent p.S107S 0.24 TCGA-BR-8368-01 8 73480280 73480280 G A KCNB2 Missense_Mutation p.R104Q 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8368-01 8 73848408 73848408 C T KCNB2 Missense_Mutation p.A273V 0.28 deleterious(0) probably_damaging(1) TCGA-BR-8368-01 8 77766976 77766976 C T ZFHX4 Missense_Mutation p.R2607C 0.22 probably_damaging(0.995) TCGA-BR-8368-01 8 82371419 82371419 G A FABP9 Missense_Mutation p.A76V 0.28 tolerated(0.08) benign(0.306) TCGA-BR-8368-01 8 86386635 86386635 T - CA2 Frame_Shift_Del p.L147* 0.22 TCGA-BR-8368-01 8 87242434 87242434 T C SLC7A13 Missense_Mutation p.N25D 0.31 tolerated(0.2) benign(0.105) TCGA-BR-8368-01 8 92083383 92083383 A G OTUD6B Missense_Mutation p.K64E 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8368-01 8 94828723 94828723 A - TMEM67 3'UTR 0.48 TCGA-BR-8368-01 8 96167002 96167004 GAT - PLEKHF2 In_Frame_Del p.D246del 0.10 TCGA-BR-8368-01 9 100234680 100234682 TTG - TDRD7 In_Frame_Del p.V618del 0.22 TCGA-BR-8368-01 9 103055250 103055251 AG - INVS Frame_Shift_Del p.E906Tfs*96 0.33 TCGA-BR-8368-01 9 103060391 103060391 C T INVS Intron 0.39 TCGA-BR-8368-01 9 106885501 106885501 A - SMC2 Frame_Shift_Del p.T751Pfs*9 0.33 TCGA-BR-8368-01 9 107360981 107360981 G T OR13C5 Silent p.S238S 0.39 TCGA-BR-8368-01 9 109690810 109690810 G A ZNF462 Silent p.P1539P 0.20 TCGA-BR-8368-01 9 111625857 111625857 C T ACTL7A Missense_Mutation p.R419C 0.31 deleterious(0) probably_damaging(1) TCGA-BR-8368-01 9 112900483 112900483 C - PALM2-AKAP2 Frame_Shift_Del p.Q889Sfs*33 0.38 TCGA-BR-8368-01 9 114131416 114131416 T - KIAA0368 Frame_Shift_Del p.N1849Mfs*44 0.22 TCGA-BR-8368-01 9 115600849 115600849 G A SNX30 Missense_Mutation p.E296K 0.25 tolerated(0.19) benign(0.335) TCGA-BR-8368-01 9 115941001 115941002 - T FKBP15 Frame_Shift_Ins p.E666Gfs*37 0.32 TCGA-BR-8368-01 9 117359933 117359933 G A ATP6V1G1 Silent p.R89R 0.07 TCGA-BR-8368-01 9 119903693 119903693 G A ASTN2 Intron 0.25 TCGA-BR-8368-01 9 123675736 123675736 C A TRAF1 Missense_Mutation p.G192V 0.33 tolerated(0.28) benign(0.179) TCGA-BR-8368-01 9 124064376 124064376 G A GSN Missense_Mutation p.A94T 0.11 deleterious(0.04) benign(0.415) TCGA-BR-8368-01 9 124079433 124079433 C A GSN Missense_Mutation p.L326M 0.09 deleterious(0) probably_damaging(1) TCGA-BR-8368-01 9 124091285 124091285 C T GSN Missense_Mutation p.R678C 0.26 tolerated(0.13) possibly_damaging(0.62) TCGA-BR-8368-01 9 130111298 130111298 C T GARNL3 Silent p.G509G 0.43 TCGA-BR-8368-01 9 130648926 130648926 C T ST6GALNAC6 Silent p.S318S 0.38 TCGA-BR-8368-01 9 131020423 131020423 G A GOLGA2 Missense_Mutation p.R755C 0.50 tolerated(0.06) probably_damaging(0.961) TCGA-BR-8368-01 9 131029791 131029791 C T GOLGA2 Silent p.A142A 0.42 TCGA-BR-8368-01 9 13121774 13121774 G A MPDZ Missense_Mutation p.P1732L 0.33 deleterious(0) probably_damaging(0.942) TCGA-BR-8368-01 9 131718660 131718660 A G RP11-101E3.5 Missense_Mutation p.K86E 0.47 deleterious(0.01) benign(0.093) TCGA-BR-8368-01 9 133355792 133355792 G A ASS1 Missense_Mutation p.R265H 0.28 tolerated(0.06) benign(0.292) TCGA-BR-8368-01 9 133932467 133932467 G - LAMC3 Frame_Shift_Del p.G699Vfs*185 0.25 TCGA-BR-8368-01 9 134340381 134340381 C T PRRC2B Missense_Mutation p.R546W 0.31 deleterious(0.01) possibly_damaging(0.462) TCGA-BR-8368-01 9 134350806 134350806 G A PRRC2B Missense_Mutation p.R1097H 0.20 deleterious(0.01) probably_damaging(0.932) TCGA-BR-8368-01 9 135277201 135277202 - T TTF1 Frame_Shift_Ins p.K337Efs*9 0.30 TCGA-BR-8368-01 9 135554691 135554691 A - GTF3C4 Frame_Shift_Del p.K564Rfs*18 0.30 TCGA-BR-8368-01 9 135975666 135975667 GA - RALGDS Frame_Shift_Del p.S853Rfs*2 0.24 TCGA-BR-8368-01 9 139317663 139317663 G A PMPCA Missense_Mutation p.A509T 0.33 deleterious(0.04) possibly_damaging(0.557) TCGA-BR-8368-01 9 139905490 139905490 C T ABCA2 Silent p.A1997A 0.39 TCGA-BR-8368-01 9 140007557 140007557 G A DPP7 Missense_Mutation p.R240C 0.35 deleterious(0) possibly_damaging(0.495) TCGA-BR-8368-01 9 140106987 140106987 C T NDOR1 Missense_Mutation p.P83S 0.27 deleterious(0.05) benign(0.435) TCGA-BR-8368-01 9 140638440 140638440 C T EHMT1 Silent p.L356L 0.17 TCGA-BR-8368-01 9 15594156 15594156 C A CCDC171 Missense_Mutation p.Q221K 0.27 tolerated(0.33) benign(0.058) TCGA-BR-8368-01 9 17135197 17135197 C T CNTLN Missense_Mutation p.A45V 0.33 tolerated_low_confidence(0.12) benign(0.093) TCGA-BR-8368-01 9 2718877 2718877 C T KCNV2 Missense_Mutation p.R380C 0.40 deleterious(0) probably_damaging(1) TCGA-BR-8368-01 9 32459462 32459462 T - DDX58 Frame_Shift_Del p.K796Nfs*28 0.26 TCGA-BR-8368-01 9 33034308 33034308 G A DNAJA1 Silent p.K246K 0.33 TCGA-BR-8368-01 9 35711378 35711378 C T TLN1 Missense_Mutation p.R1298Q 0.30 tolerated(0.97) benign(0.002) TCGA-BR-8368-01 9 36147846 36147847 - C GLIPR2 Frame_Shift_Ins p.L29Tfs*16 0.29 TCGA-BR-8368-01 9 37126641 37126642 - G ZCCHC7 Frame_Shift_Ins p.N107Efs*3 0.27 TCGA-BR-8368-01 9 37440550 37440550 A G ZBTB5 Missense_Mutation p.W667R 0.41 deleterious(0.01) probably_damaging(0.997) TCGA-BR-8368-01 9 405015 405015 T - DOCK8 Frame_Shift_Del p.F1113Lfs*2 0.38 TCGA-BR-8368-01 9 40773995 40773995 G A ZNF658 Missense_Mutation p.P427L 0.33 tolerated(0.3) benign(0.001) TCGA-BR-8368-01 9 5064999 5064999 C T JAK2 Silent p.A391A 0.28 TCGA-BR-8368-01 9 5765510 5765510 C T KIAA1432 Nonsense_Mutation p.R980* 0.09 TCGA-BR-8368-01 9 70177146 70177146 C T FOXD4L5 Missense_Mutation p.G280R 0.14 tolerated(0.08) benign(0.126) TCGA-BR-8368-01 9 70993145 70993145 A G PGM5 Missense_Mutation p.I98V 0.14 deleterious(0.01) possibly_damaging(0.573) TCGA-BR-8368-01 9 72967216 72967216 G A SMC5 Missense_Mutation p.R1092Q 0.26 tolerated(0.16) probably_damaging(0.994) TCGA-BR-8368-01 9 73233871 73233871 C T TRPM3 Missense_Mutation p.R745H 0.43 deleterious(0.01) probably_damaging(0.949) TCGA-BR-8368-01 9 79118407 79118407 G A GCNT1 Silent p.P370P 0.34 TCGA-BR-8368-01 9 79318668 79318668 T C PRUNE2 Missense_Mutation p.R2621G 0.33 deleterious(0) benign(0.367) TCGA-BR-8368-01 9 80046280 80046280 C T GNA14 Missense_Mutation p.G184S 0.29 deleterious(0) probably_damaging(0.999) TCGA-BR-8368-01 9 84531633 84531633 T C SPATA31D5P RNA 0.08 TCGA-BR-8368-01 9 89771628 89771628 C T C9orf170 Silent p.N103N 0.30 TCGA-BR-8368-01 9 90585538 90585538 G A CDK20 Nonsense_Mutation p.R170* 0.25 TCGA-BR-8368-01 9 92008486 92008486 C T SEMA4D Missense_Mutation p.V167I 0.33 tolerated(0.26) benign(0.022) TCGA-BR-8368-01 9 93607755 93607755 C T SYK Nonsense_Mutation p.Q153* 0.40 TCGA-BR-8368-01 9 95482663 95482663 C T BICD2 Silent p.P327P 0.31 TCGA-BR-8368-01 9 95765277 95765277 G A FGD3 Missense_Mutation p.R175Q 0.34 deleterious(0) probably_damaging(0.973) TCGA-BR-8368-01 9 95841807 95841807 C T SUSD3 Silent p.A160A 0.42 TCGA-BR-8368-01 9 96097854 96097854 G A C9orf129 Missense_Mutation p.T56M 0.39 deleterious_low_confidence(0) possibly_damaging(0.897) TCGA-BR-8368-01 9 96439875 96439875 C T PHF2 Missense_Mutation p.R1070C 0.23 deleterious(0) possibly_damaging(0.689) TCGA-BR-8368-01 9 96714376 96714376 C T BARX1 3'UTR 0.44 TCGA-BR-8368-01 X 10078029 10078029 C T WWC3 Missense_Mutation p.R315W 0.38 deleterious(0) possibly_damaging(0.888) TCGA-BR-8368-01 X 101095825 101095825 C A NXF5 Missense_Mutation p.D175Y 0.33 deleterious(0.02) probably_damaging(0.993) TCGA-BR-8368-01 X 102529304 102529304 T G TCEAL5 Missense_Mutation p.E63A 0.33 deleterious(0.02) benign(0.304) TCGA-BR-8368-01 X 103041611 103041611 C T PLP1 Missense_Mutation p.R137W 0.38 deleterious_low_confidence(0.02) possibly_damaging(0.465) TCGA-BR-8368-01 X 105181436 105181436 A G NRK Missense_Mutation p.N1222D 0.43 deleterious(0) probably_damaging(0.991) TCGA-BR-8368-01 X 105970349 105970349 G A RNF128 Missense_Mutation p.G69D 0.44 deleterious(0) probably_damaging(1) TCGA-BR-8368-01 X 105970426 105970426 G A RNF128 Missense_Mutation p.A95T 0.50 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8368-01 X 106893420 106893420 C T PRPS1 3'UTR 0.36 TCGA-BR-8368-01 X 107372043 107372043 C T ATG4A Missense_Mutation p.R52C 0.40 deleterious(0) probably_damaging(0.984) TCGA-BR-8368-01 X 107977352 107977352 T C IRS4 Silent p.R741R 0.29 TCGA-BR-8368-01 X 108691390 108691390 G A GUCY2F Missense_Mutation p.R493C 0.35 tolerated(0.09) benign(0.001) TCGA-BR-8368-01 X 109507781 109507781 C A AMMECR1 Nonsense_Mutation p.G174* 0.34 TCGA-BR-8368-01 X 111195319 111195319 G A TRPC5 Silent p.G110G 0.39 TCGA-BR-8368-01 X 118724034 118724034 C T NKRF Missense_Mutation p.V467M 0.37 deleterious(0) probably_damaging(0.992) TCGA-BR-8368-01 X 122537368 122537368 C T GRIA3 Silent p.L431L 0.30 TCGA-BR-8368-01 X 123514832 123514832 G T TENM1 Missense_Mutation p.L2585I 0.09 tolerated(0.46) benign(0.148) TCGA-BR-8368-01 X 130417039 130417039 T C IGSF1 Silent p.Q289Q 0.35 TCGA-BR-8368-01 X 132439923 132439923 G - GPC4 Frame_Shift_Del p.K345Sfs*49 0.28 TCGA-BR-8368-01 X 133941488 133941488 A G FAM122C 5'UTR 0.19 TCGA-BR-8368-01 X 135430010 135430010 G T GPR112 Missense_Mutation p.S1382I 0.43 deleterious(0.05) benign(0.03) TCGA-BR-8368-01 X 136113044 136113044 G A GPR101 Missense_Mutation p.R264C 0.28 tolerated(0.18) benign(0.002) TCGA-BR-8368-01 X 144906227 144906227 C T SLITRK2 Nonsense_Mutation p.R762* 0.32 TCGA-BR-8368-01 X 147009866 147009866 G A FMR1 Silent p.E75E 0.26 TCGA-BR-8368-01 X 1471219 1471219 C T IL3RA Missense_Mutation p.R146C 0.39 tolerated(0.16) possibly_damaging(0.594) TCGA-BR-8368-01 X 150345310 150345310 C T GPR50 Silent p.I39I 0.38 TCGA-BR-8368-01 X 150349306 150349306 C T GPR50 Silent p.H417H 0.38 TCGA-BR-8368-01 X 150573618 150573618 G A VMA21 3'UTR 0.43 TCGA-BR-8368-01 X 152958488 152958488 C - SLC6A8 Intron 0.30 TCGA-BR-8368-01 X 153033730 153033730 C T PLXNB3 Silent p.G394G 0.25 TCGA-BR-8368-01 X 153040511 153040511 C G PLXNB3 Missense_Mutation p.L1393V 0.37 deleterious(0) probably_damaging(0.996) TCGA-BR-8368-01 X 153095870 153095871 - G PDZD4 5'UTR 0.35 TCGA-BR-8368-01 X 153593586 153593586 C T FLNA Missense_Mutation p.V537M 0.40 deleterious(0.04) possibly_damaging(0.641) TCGA-BR-8368-01 X 153599571 153599571 C T FLNA Missense_Mutation p.A15T 0.40 tolerated_low_confidence(0.59) unknown(0) TCGA-BR-8368-01 X 154280049 154280049 T C FUNDC2 Silent p.P155P 0.32 TCGA-BR-8368-01 X 154348417 154348417 C G BRCC3 Missense_Mutation p.L315V 0.33 tolerated_low_confidence(0.1) unknown(0) TCGA-BR-8368-01 X 1585026 1585026 G A P2RY8 Silent p.A142A 0.50 TCGA-BR-8368-01 X 16170715 16170715 G A GRPR Missense_Mutation p.V368M 0.42 tolerated(0.4) benign(0.002) TCGA-BR-8368-01 X 16887283 16887285 TTC - RBBP7 In_Frame_Del p.K69del 0.44 TCGA-BR-8368-01 X 19389099 19389099 G A MAP3K15 Silent p.A1126A 0.41 TCGA-BR-8368-01 X 19725094 19725094 G A SH3KBP1 Missense_Mutation p.R99W 0.42 deleterious(0) probably_damaging(0.989) TCGA-BR-8368-01 X 2343243 2343243 A G DHRSX Missense_Mutation p.I71T 0.47 deleterious(0.01) probably_damaging(0.938) TCGA-BR-8368-01 X 24228818 24228818 C T ZFX Silent p.C581C 0.31 TCGA-BR-8368-01 X 24483604 24483604 C T PDK3 Missense_Mutation p.P11L 0.33 tolerated(0.08) benign(0.007) TCGA-BR-8368-01 X 29301173 29301173 C T IL1RAPL1 Silent p.A67A 0.34 TCGA-BR-8368-01 X 30254466 30254466 A - MAGEB3 Frame_Shift_Del p.S144Afs*25 0.30 TCGA-BR-8368-01 X 30260427 30260427 C - MAGEB4 Frame_Shift_Del p.Q60Rfs*50 0.22 TCGA-BR-8368-01 X 3235851 3235851 G A MXRA5 Silent p.Y1957Y 0.38 TCGA-BR-8368-01 X 32535992 32535992 T - DMD Intron 0.45 TCGA-BR-8368-01 X 34148467 34148467 C A FAM47A Missense_Mutation p.K643N 0.35 tolerated(0.17) probably_damaging(0.978) TCGA-BR-8368-01 X 41060495 41060497 GAT - USP9X In_Frame_Del p.D1598del 0.41 TCGA-BR-8368-01 X 46433917 46433917 C T CHST7 Missense_Mutation p.T184M 0.34 deleterious(0.03) benign(0.118) TCGA-BR-8368-01 X 46541838 46541838 T C SLC9A7 Missense_Mutation p.Y153C 0.34 deleterious(0) possibly_damaging(0.55) TCGA-BR-8368-01 X 47426094 47426094 C - ARAF Frame_Shift_Del p.L207Yfs*85 0.32 TCGA-BR-8368-01 X 48244824 48244824 G A SSX4 Missense_Mutation p.R72H 0.23 tolerated(0.37) benign(0.002) TCGA-BR-8368-01 X 49048143 49048143 C T SYP Silent p.P231P 0.29 TCGA-BR-8368-01 X 49083447 49083447 C T CACNA1F Missense_Mutation p.A421T 0.26 tolerated(0.55) benign(0.009) TCGA-BR-8368-01 X 50028182 50028182 C - CCNB3 Frame_Shift_Del p.Q8Rfs*79 0.24 TCGA-BR-8368-01 X 50377325 50377325 C T SHROOM4 Missense_Mutation p.R583Q 0.23 deleterious(0) probably_damaging(0.999) TCGA-BR-8368-01 X 50557009 50557009 G A SHROOM4 Missense_Mutation p.R4W 0.58 deleterious_low_confidence(0) possibly_damaging(0.828) TCGA-BR-8368-01 X 51151466 51151466 C T CXorf67 3'UTR 0.60 TCGA-BR-8368-01 X 53285133 53285133 C G IQSEC2 Missense_Mutation p.G283A 0.29 tolerated_low_confidence(0.46) benign(0.012) TCGA-BR-8368-01 X 53573484 53573484 G A HUWE1 Missense_Mutation p.R3610W 0.46 unknown(0) TCGA-BR-8368-01 X 54026320 54026320 C A PHF8 Missense_Mutation p.A442S 0.32 tolerated(1) benign(0.003) TCGA-BR-8368-01 X 54263784 54263784 G T WNK3 Silent p.T1405T 0.40 TCGA-BR-8368-01 X 54275765 54275765 G T WNK3 Missense_Mutation p.P1006T 0.32 deleterious(0.04) benign(0.014) TCGA-BR-8368-01 X 57618747 57618747 G A ZXDB Missense_Mutation p.G89D 0.60 deleterious_low_confidence(0.01) benign(0.007) TCGA-BR-8368-01 X 57620179 57620179 G A ZXDB Silent p.T566T 0.36 TCGA-BR-8368-01 X 591556 591556 C T SHOX 5'UTR 0.31 TCGA-BR-8368-01 X 65486430 65486430 G A HEPH Nonsense_Mutation p.W1185* 0.30 TCGA-BR-8368-01 X 70469892 70469892 C T ZMYM3 Missense_Mutation p.C412Y 0.26 deleterious(0) probably_damaging(0.999) TCGA-BR-8368-01 X 70516763 70516763 G A NONO Missense_Mutation p.R270H 0.33 deleterious(0.04) benign(0.159) TCGA-BR-8368-01 X 71829541 71829541 G C PHKA1 Missense_Mutation p.L847V 0.35 deleterious(0) probably_damaging(0.981) TCGA-BR-8368-01 X 72434188 72434188 G A NAP1L2 Silent p.C47C 0.31 TCGA-BR-8368-01 X 73066346 73066346 A G XIST RNA 0.33 TCGA-BR-8368-01 X 73961406 73961406 T C KIAA2022 Missense_Mutation p.M996V 0.36 tolerated(1) benign(0) TCGA-BR-8368-01 X 75649451 75649451 G A MAGEE1 Silent p.S376S 0.44 TCGA-BR-8368-01 X 76939711 76939711 A G ATRX Missense_Mutation p.L346P 0.06 probably_damaging(0.999) TCGA-BR-8368-01 X 79286647 79286647 C A TBX22 3'UTR 0.29 TCGA-BR-8368-01 X 84362915 84362915 G A SATL1 Nonsense_Mutation p.R354* 0.29 TCGA-BR-8368-01 X 86924240 86924240 A G KLHL4 Intron 0.33 TCGA-BR-8368-01 X 89177108 89177108 G A TGIF2LX Silent p.P8P 0.35 TCGA-BR-8368-01 X 99657766 99657766 C T PCDH19 Missense_Mutation p.R791Q 0.30 tolerated(0.21) benign(0.217) TCGA-BR-8369-01 10 21124467 21124467 T C NEBL Missense_Mutation p.K475R 0.06 tolerated(0.2) benign(0.012) TCGA-BR-8369-01 10 26457648 26457648 T G MYO3A Missense_Mutation p.L1040R 0.10 deleterious(0) probably_damaging(0.999) TCGA-BR-8369-01 10 28270418 28270418 A C ARMC4 Missense_Mutation p.F305V 0.12 deleterious(0.01) probably_damaging(0.984) TCGA-BR-8369-01 10 45799057 45799057 C T OR13A1 Missense_Mutation p.A272T 0.07 tolerated(1) benign(0.004) TCGA-BR-8369-01 10 60273052 60273052 G A BICC1 Missense_Mutation p.R50H 0.12 deleterious(0) benign(0.007) TCGA-BR-8369-01 10 60556253 60556253 T G BICC1 Missense_Mutation p.L445V 0.05 tolerated(0.06) probably_damaging(0.984) TCGA-BR-8369-01 10 61011428 61011428 A C FAM13C Missense_Mutation p.L514R 0.12 deleterious(0) probably_damaging(1) TCGA-BR-8369-01 10 6557055 6557055 C T PRKCQ Missense_Mutation p.G15R 0.06 deleterious(0) possibly_damaging(0.791) TCGA-BR-8369-01 10 70248329 70248329 G A SLC25A16 Missense_Mutation p.T223I 0.03 tolerated(0.18) benign(0.147) TCGA-BR-8369-01 10 96030337 96030337 G A PLCE1 Missense_Mutation p.R1495Q 0.08 tolerated(0.13) probably_damaging(0.999) TCGA-BR-8369-01 11 102713534 102713534 C T MMP3 Silent p.L73L 0.10 TCGA-BR-8369-01 11 103780501 103780501 T C PDGFD Missense_Mutation p.K345R 0.12 tolerated(0.69) benign(0.12) TCGA-BR-8369-01 11 107423922 107423922 T A ALKBH8 Missense_Mutation p.K169N 0.17 deleterious(0.01) probably_damaging(0.984) TCGA-BR-8369-01 11 108013170 108013171 - A ACAT1 Frame_Shift_Ins p.T279Nfs*10 0.27 TCGA-BR-8369-01 11 118347547 118347547 T C KMT2A Missense_Mutation p.S1062P 0.08 possibly_damaging(0.878) TCGA-BR-8369-01 11 126134397 126134397 C T SRPR Silent p.T521T 0.04 TCGA-BR-8369-01 11 128708993 128708993 T G KCNJ1 3'UTR 0.15 TCGA-BR-8369-01 11 131781373 131781373 A G NTM 5'UTR 0.07 TCGA-BR-8369-01 11 14282168 14282168 G C RP11-21L19.1 3'Flank 0.11 TCGA-BR-8369-01 11 22291880 22291880 C T ANO5 Missense_Mutation p.R641C 0.11 deleterious(0) possibly_damaging(0.906) TCGA-BR-8369-01 11 36422752 36422752 G T PRR5L Missense_Mutation p.M27I 0.10 deleterious(0) probably_damaging(0.958) TCGA-BR-8369-01 11 36597271 36597271 A G RAG1 Missense_Mutation p.E806G 0.06 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-BR-8369-01 11 40137656 40137656 C A LRRC4C Missense_Mutation p.V63F 0.10 deleterious(0) benign(0.173) TCGA-BR-8369-01 11 50003778 50003778 T G OR4C12 Missense_Mutation p.K87T 0.12 deleterious_low_confidence(0.02) benign(0.169) TCGA-BR-8369-01 11 55321970 55321970 A C OR4C15 Missense_Mutation p.E63A 0.12 deleterious_low_confidence(0) possibly_damaging(0.65) TCGA-BR-8369-01 11 5537169 5537169 T C UBQLNL Missense_Mutation p.H168R 0.16 tolerated(0.12) benign(0) TCGA-BR-8369-01 11 55944903 55944903 A C OR5J2 Missense_Mutation p.Q270H 0.13 tolerated(0.18) benign(0.183) TCGA-BR-8369-01 11 62286163 62286163 G A AHNAK Silent p.G5242G 0.10 TCGA-BR-8369-01 11 62294047 62294047 G A AHNAK Silent p.D2614D 0.10 TCGA-BR-8369-01 11 6432344 6432344 C T APBB1 Silent p.R78R 0.10 TCGA-BR-8369-01 11 6898769 6898769 A T OR10A4 Missense_Mutation p.E297D 0.10 tolerated(0.49) possibly_damaging(0.665) TCGA-BR-8369-01 11 6977489 6977489 A G ZNF215 Silent p.K427K 0.17 TCGA-BR-8369-01 11 72293485 72293485 C T PDE2A Intron 0.08 TCGA-BR-8369-01 11 75298497 75298497 T C MAP6 Silent p.Q683Q 0.26 TCGA-BR-8369-01 11 85630404 85630404 T G CCDC83 Missense_Mutation p.L396V 0.13 deleterious(0) probably_damaging(0.968) TCGA-BR-8369-01 11 89774338 89774338 A C TRIM49C Missense_Mutation p.S327R 0.11 tolerated(0.19) benign(0.01) TCGA-BR-8369-01 11 94801073 94801074 TG - SRSF8 Frame_Shift_Del p.L228Pfs*55 0.08 TCGA-BR-8369-01 12 100994193 100994193 C T GAS2L3 Missense_Mutation p.R18W 0.17 deleterious(0) probably_damaging(1) TCGA-BR-8369-01 12 109637317 109637317 G A ACACB Missense_Mutation p.G913E 0.12 deleterious(0) benign(0.169) TCGA-BR-8369-01 12 122826228 122826228 T A CLIP1 Missense_Mutation p.E508V 0.14 deleterious(0) probably_damaging(0.989) TCGA-BR-8369-01 12 21033890 21033890 G T SLCO1B3 Missense_Mutation p.G478V 0.10 deleterious(0) probably_damaging(1) TCGA-BR-8369-01 12 40716964 40716964 G T LRRK2 Missense_Mutation p.D1838Y 0.08 tolerated(0.06) probably_damaging(0.99) TCGA-BR-8369-01 12 46322375 46322389 TGTCTTGTTTGCTTT - SCAF11 In_Frame_Del p.K366_Q370del 0.12 TCGA-BR-8369-01 12 53010119 53010119 C T KRT73 Missense_Mutation p.E165K 0.11 tolerated(0.17) benign(0.052) TCGA-BR-8369-01 12 53043714 53043714 A C KRT2 Missense_Mutation p.F282C 0.19 deleterious(0) probably_damaging(0.999) TCGA-BR-8369-01 12 56679728 56679728 G A CS Missense_Mutation p.T58M 0.14 deleterious(0.03) possibly_damaging(0.548) TCGA-BR-8369-01 12 56826160 56826160 C T TIMELESS Missense_Mutation p.R227H 0.16 deleterious(0) probably_damaging(0.998) TCGA-BR-8369-01 12 80726827 80726827 T C OTOGL Missense_Mutation p.M1455T 0.20 tolerated(0.66) benign(0) TCGA-BR-8369-01 12 81657026 81657026 T G PPFIA2 Missense_Mutation p.R1233S 0.10 tolerated_low_confidence(0.06) benign(0.059) TCGA-BR-8369-01 12 86373333 86373333 T C MGAT4C Missense_Mutation p.K391E 0.08 tolerated(0.11) benign(0.04) TCGA-BR-8369-01 13 102521141 102521141 A C FGF14 Silent p.V119V 0.15 TCGA-BR-8369-01 13 23907444 23907444 A G SACS Missense_Mutation p.L3524S 0.10 benign(0.175) TCGA-BR-8369-01 13 46946450 46946450 A T KIAA0226L Missense_Mutation p.I54N 0.09 deleterious(0.02) possibly_damaging(0.671) TCGA-BR-8369-01 13 79940921 79940921 T C RBM26 Missense_Mutation p.M328V 0.23 tolerated(0.23) benign(0.016) TCGA-BR-8369-01 13 84453566 84453566 A G SLITRK1 Missense_Mutation p.S693P 0.09 tolerated(0.35) possibly_damaging(0.522) TCGA-BR-8369-01 13 86368709 86368709 A G SLITRK6 Silent p.D645D 0.04 TCGA-BR-8369-01 14 100604082 100604082 C T EVL Missense_Mutation p.P346L 0.09 tolerated(0.06) possibly_damaging(0.508) TCGA-BR-8369-01 14 101489759 101489759 C T MIR379 3'Flank 0.11 TCGA-BR-8369-01 14 106054174 106054174 C T IGHA2 Silent p.S115S 0.33 TCGA-BR-8369-01 14 20248972 20248972 T C OR4M1 Missense_Mutation p.V164A 0.12 tolerated(0.09) benign(0.021) TCGA-BR-8369-01 14 64953979 64953979 G A ZBTB25 Nonsense_Mutation p.Q324* 0.12 TCGA-BR-8369-01 14 65521395 65521395 C T FNTB Silent p.P390P 0.21 TCGA-BR-8369-01 14 70926219 70926219 G A ADAM21 Missense_Mutation p.G668E 0.08 deleterious(0) probably_damaging(0.971) TCGA-BR-8369-01 14 74876225 74876225 C G SYNDIG1L Missense_Mutation p.G75R 0.20 tolerated(0.34) probably_damaging(0.999) TCGA-BR-8369-01 14 75416197 75416197 C T PGF Missense_Mutation p.D60N 0.12 tolerated(0.06) benign(0.436) TCGA-BR-8369-01 14 94109905 94109905 G A UNC79 Missense_Mutation p.C1831Y 0.16 deleterious(0) probably_damaging(0.998) TCGA-BR-8369-01 15 23811300 23811300 G A MKRN3 Missense_Mutation p.R124Q 0.13 tolerated(0.28) benign(0.04) TCGA-BR-8369-01 15 25958993 25958993 C T ATP10A Silent p.V724V 0.09 TCGA-BR-8369-01 15 33916068 33916068 T G RYR3 Nonsense_Mutation p.Y806* 0.11 TCGA-BR-8369-01 15 33993213 33993213 G T RYR3 Missense_Mutation p.V2139L 0.22 probably_damaging(0.921) TCGA-BR-8369-01 15 35155120 35155120 C A AQR Missense_Mutation p.R1326L 0.15 deleterious(0) possibly_damaging(0.856) TCGA-BR-8369-01 15 45410299 45410299 T A DUOXA1 Intron 0.19 TCGA-BR-8369-01 15 55724773 55724773 T C DYX1C1 Missense_Mutation p.T359A 0.08 tolerated(1) benign(0) TCGA-BR-8369-01 15 70342373 70342373 G A TLE3 3'UTR 0.10 TCGA-BR-8369-01 15 72190072 72190072 G A MYO9A Missense_Mutation p.S1591F 0.04 tolerated_low_confidence(0.05) benign(0.372) TCGA-BR-8369-01 16 12142361 12142361 C T SNX29 Missense_Mutation p.T211M 0.26 deleterious(0) probably_damaging(0.99) TCGA-BR-8369-01 16 27506768 27506768 C T GTF3C1 Missense_Mutation p.R799H 0.11 deleterious(0) probably_damaging(0.999) TCGA-BR-8369-01 16 49672521 49672521 C T ZNF423 Missense_Mutation p.R181H 0.24 deleterious(0) probably_damaging(0.999) TCGA-BR-8369-01 16 55361588 55361588 C A IRX6 Missense_Mutation p.H168Q 0.25 deleterious(0) probably_damaging(1) TCGA-BR-8369-01 16 65005574 65005574 T A CDH11 Missense_Mutation p.D517V 0.06 deleterious(0) possibly_damaging(0.796) TCGA-BR-8369-01 16 86545019 86545019 G A FOXF1 Missense_Mutation p.A282T 0.13 tolerated(0.07) benign(0.009) TCGA-BR-8369-01 17 18862516 18862516 G A SLC5A10 Silent p.A84A 0.11 TCGA-BR-8369-01 17 36997469 36997469 G A C17orf98 Silent p.H58H 0.09 TCGA-BR-8369-01 17 38711389 38711389 G A CCR7 Missense_Mutation p.R248C 0.10 deleterious(0) possibly_damaging(0.849) TCGA-BR-8369-01 17 42992568 42992568 G A GFAP Missense_Mutation p.A96V 0.05 tolerated(0.65) benign(0.006) TCGA-BR-8369-01 17 43175752 43175754 AGA - NMT1 In_Frame_Del p.K241del 0.13 TCGA-BR-8369-01 17 48594780 48594780 C A MYCBPAP Missense_Mutation p.P154T 0.10 deleterious(0.03) possibly_damaging(0.906) TCGA-BR-8369-01 17 7579311 7579311 C T TP53 Splice_Site p.X125_splice 0.25 TCGA-BR-8369-01 18 25572801 25572801 A T CDH2 Missense_Mutation p.Y388N 0.11 tolerated(0.33) benign(0.28) TCGA-BR-8369-01 18 44559975 44559975 A G TCEB3B Missense_Mutation p.V554A 0.20 tolerated(0.07) benign(0.047) TCGA-BR-8369-01 18 44559978 44559978 C G TCEB3B Missense_Mutation p.W553S 0.21 tolerated(1) benign(0.008) TCGA-BR-8369-01 18 64172366 64172366 G A CDH19 Missense_Mutation p.R668C 0.15 tolerated(0.19) possibly_damaging(0.87) TCGA-BR-8369-01 18 65181696 65181696 G T DSEL Missense_Mutation p.F60L 0.11 tolerated_low_confidence(0.73) benign(0) TCGA-BR-8369-01 19 1056917 1056917 C T ABCA7 Missense_Mutation p.S1533L 0.16 deleterious(0) possibly_damaging(0.883) TCGA-BR-8369-01 19 12502756 12502756 G A ZNF799 Silent p.Y152Y 0.11 TCGA-BR-8369-01 19 20002426 20002426 G C ZNF253 Missense_Mutation p.V124L 0.11 tolerated(0.14) probably_damaging(0.97) TCGA-BR-8369-01 19 38899405 38899405 C T FAM98C Silent p.N311N 0.13 TCGA-BR-8369-01 19 43420503 43420503 C G PSG6 Missense_Mutation p.W67C 0.11 deleterious(0) probably_damaging(1) TCGA-BR-8369-01 19 45322967 45322967 C T BCAM Missense_Mutation p.R583W 0.33 deleterious(0.01) possibly_damaging(0.517) TCGA-BR-8369-01 19 49224062 49224062 G C RASIP1 Missense_Mutation p.S962C 0.14 deleterious_low_confidence(0.01) benign(0.219) TCGA-BR-8369-01 19 57088195 57088195 C A ZNF470 Nonsense_Mutation p.S133* 0.11 TCGA-BR-8369-01 19 57988660 57988660 C T ZNF772 Silent p.P6P 0.06 TCGA-BR-8369-01 19 58290568 58290568 C T ZNF586 Missense_Mutation p.R205C 0.14 deleterious(0) benign(0.026) TCGA-BR-8369-01 19 8808001 8808001 C T ACTL9 Missense_Mutation p.E351K 0.09 tolerated(0.13) benign(0.056) TCGA-BR-8369-01 19 9071824 9071824 T C MUC16 Missense_Mutation p.S5208G 0.16 unknown(0) TCGA-BR-8369-01 1 103343634 103343634 A C COL11A1 Missense_Mutation p.F1788V 0.12 unknown(0) TCGA-BR-8369-01 1 111217049 111217049 G A KCNA3 Missense_Mutation p.T128M 0.14 deleterious(0) probably_damaging(1) TCGA-BR-8369-01 1 145517343 145517343 A - PEX11B Frame_Shift_Del p.K43Nfs*10 0.10 TCGA-BR-8369-01 1 145537443 145537443 G A ITGA10 Missense_Mutation p.R818Q 0.22 tolerated(0.09) benign(0.056) TCGA-BR-8369-01 1 158227231 158227231 T G CD1A Missense_Mutation p.F302V 0.12 tolerated(0.1) benign(0) TCGA-BR-8369-01 1 158576540 158576540 T C OR10Z1 Silent p.S104S 0.07 TCGA-BR-8369-01 1 158670422 158670422 G T OR6K2 Silent p.T7T 0.10 TCGA-BR-8369-01 1 162725000 162725000 C T DDR2 Missense_Mutation p.P158S 0.10 deleterious(0.03) possibly_damaging(0.846) TCGA-BR-8369-01 1 169510379 169510379 C T F5 Missense_Mutation p.G1317S 0.08 tolerated_low_confidence(0.59) benign(0.002) TCGA-BR-8369-01 1 169961306 169961309 CAGT - KIFAP3 Frame_Shift_Del p.D424Vfs*5 0.17 TCGA-BR-8369-01 1 175325573 175325573 G A TNR Silent p.D1000D 0.08 TCGA-BR-8369-01 1 196577467 196577467 A G KCNT2 5'UTR 0.15 TCGA-BR-8369-01 1 197026303 197026303 C A F13B Missense_Mutation p.E337D 0.20 tolerated(0.34) benign(0.03) TCGA-BR-8369-01 1 201017715 201017715 G A CACNA1S Missense_Mutation p.T1479M 0.10 deleterious(0) probably_damaging(0.996) TCGA-BR-8369-01 1 201382217 201382217 C A TNNI1 Missense_Mutation p.E74D 0.19 tolerated(1) benign(0.002) TCGA-BR-8369-01 1 201786280 201786280 C T NAV1 Missense_Mutation p.P1802L 0.08 deleterious(0) probably_damaging(0.996) TCGA-BR-8369-01 1 204978710 204978710 C T NFASC Silent p.I1105I 0.07 TCGA-BR-8369-01 1 211433402 211433402 T A RCOR3 Intron 0.31 TCGA-BR-8369-01 1 213181648 213181648 A G ANGEL2 Silent p.D182D 0.20 TCGA-BR-8369-01 1 22329534 22329534 C T CELA3A Missense_Mutation p.R28C 0.07 deleterious(0) probably_damaging(0.995) TCGA-BR-8369-01 1 237604732 237604732 T C RYR2 Silent p.T373T 0.13 TCGA-BR-8369-01 1 247921688 247921688 T G OR1C1 Silent p.T7T 0.07 TCGA-BR-8369-01 1 36614866 36614866 G A TRAPPC3 Intron 0.23 TCGA-BR-8369-01 1 39801222 39801222 A G MACF1 Intron 0.09 TCGA-BR-8369-01 1 55145625 55145625 G A MROH7 Missense_Mutation p.R763H 0.14 deleterious(0) probably_damaging(0.999) TCGA-BR-8369-01 1 70587464 70587464 C T LRRC7 Missense_Mutation p.A1503V 0.11 tolerated(0.19) benign(0.394) TCGA-BR-8369-01 20 16410511 16410511 T G KIF16B Missense_Mutation p.L473F 0.09 deleterious(0) probably_damaging(1) TCGA-BR-8369-01 20 17639647 17639647 G T RRBP1 Intron 0.24 TCGA-BR-8369-01 20 17639648 17639648 G C RRBP1 Intron 0.24 TCGA-BR-8369-01 20 17639650 17639650 C T RRBP1 Intron 0.24 TCGA-BR-8369-01 20 30526998 30526998 G T TTLL9 Missense_Mutation p.G391V 0.08 deleterious(0) probably_damaging(0.972) TCGA-BR-8369-01 20 39317195 39317195 G A MAFB Missense_Mutation p.A99V 0.08 tolerated(0.12) benign(0.169) TCGA-BR-8369-01 20 40770578 40770578 T A PTPRT Missense_Mutation p.N916I 0.07 deleterious(0) probably_damaging(0.936) TCGA-BR-8369-01 20 40770584 40770584 T G PTPRT Missense_Mutation p.N914T 0.06 tolerated(1) benign(0.233) TCGA-BR-8369-01 20 40864897 40864897 T G PTPRT Silent p.R772R 0.06 TCGA-BR-8369-01 20 62038613 62038613 G T KCNQ2 Missense_Mutation p.P668Q 0.13 deleterious(0) probably_damaging(1) TCGA-BR-8369-01 21 22906909 22906909 A T NCAM2 Missense_Mutation p.R778S 0.12 tolerated(0.29) benign(0.001) TCGA-BR-8369-01 21 35893851 35893851 C A RCAN1 Missense_Mutation p.A178S 0.29 tolerated(0.11) possibly_damaging(0.78) TCGA-BR-8369-01 22 18020105 18020105 T A CECR2 Nonsense_Mutation p.Y479* 0.09 TCGA-BR-8369-01 22 22599607 22599607 A G VPREB1 Missense_Mutation p.Y99C 0.14 deleterious(0.01) probably_damaging(1) TCGA-BR-8369-01 22 24837199 24837199 T C ADORA2A Silent p.H327H 0.13 TCGA-BR-8369-01 22 42466399 42466399 C A NAGA 5'UTR 0.12 TCGA-BR-8369-01 2 107446605 107446605 T G ST6GAL2 Missense_Mutation p.K412T 0.05 probably_damaging(0.968) TCGA-BR-8369-01 2 119699881 119699881 G A MARCO Missense_Mutation p.R2K 0.11 tolerated(0.29) benign(0.364) TCGA-BR-8369-01 2 133542677 133542677 G T NCKAP5 Silent p.G569G 0.09 TCGA-BR-8369-01 2 141081582 141081582 C A LRP1B Nonsense_Mutation p.G4132* 0.13 TCGA-BR-8369-01 2 141806706 141806706 A C LRP1B Missense_Mutation p.D546E 0.13 benign(0.417) TCGA-BR-8369-01 2 160206503 160206507 TATTA G BAZ2B Frame_Shift_Del p.N1526Ifs*23 0.17 TCGA-BR-8369-01 2 162275557 162275557 C T TBR1 Missense_Mutation p.T375M 0.03 deleterious(0) probably_damaging(0.996) TCGA-BR-8369-01 2 179427323 179427323 A G TTN Missense_Mutation p.Y27846H 0.18 TCGA-BR-8369-01 2 18113498 18113498 A G KCNS3 Missense_Mutation p.K408R 0.15 tolerated(0.06) possibly_damaging(0.772) TCGA-BR-8369-01 2 188211006 188211006 C A CALCRL Missense_Mutation p.G431C 0.11 tolerated(0.26) benign(0.004) TCGA-BR-8369-01 2 210561456 210561456 A C MAP2 Missense_Mutation p.E1457D 0.13 deleterious(0.02) probably_damaging(0.959) TCGA-BR-8369-01 2 21226058 21226058 C T APOB Missense_Mutation p.G4079E 0.24 benign(0.001) TCGA-BR-8369-01 2 225266233 225266233 C T FAM124B Missense_Mutation p.V85I 0.12 tolerated(0.14) benign(0.016) TCGA-BR-8369-01 2 227920702 227920702 G A COL4A4 Missense_Mutation p.P892L 0.05 unknown(0) TCGA-BR-8369-01 2 235949905 235949905 G A SH3BP4 Silent p.G164G 0.04 TCGA-BR-8369-01 2 239170935 239170935 C A PER2 Missense_Mutation p.A402S 0.11 deleterious(0.03) possibly_damaging(0.539) TCGA-BR-8369-01 2 242089932 242089932 G A PPP1R7 Missense_Mutation p.G8R 0.19 tolerated_low_confidence(0.11) benign(0.012) TCGA-BR-8369-01 2 28805000 28805004 GGTAC - PLB1 Splice_Site p.X544_splice 0.16 TCGA-BR-8369-01 2 29297042 29297042 C T C2orf71 Missense_Mutation p.R29Q 0.13 deleterious(0.01) benign(0.338) TCGA-BR-8369-01 2 46842221 46842221 G A PIGF Missense_Mutation p.S28L 0.11 tolerated(0.17) benign(0.111) TCGA-BR-8369-01 2 68882618 68882618 T G PROKR1 Silent p.S364S 0.08 TCGA-BR-8369-01 2 69297834 69297834 A C ANTXR1 Missense_Mutation p.T118P 0.12 deleterious(0) probably_damaging(1) TCGA-BR-8369-01 3 119263627 119263627 C T CD80 Missense_Mutation p.R63H 0.17 deleterious(0) probably_damaging(0.999) TCGA-BR-8369-01 3 119305464 119305464 T A ADPRH Missense_Mutation p.Y211N 0.22 tolerated(0.31) benign(0.01) TCGA-BR-8369-01 3 120959317 120959317 C A STXBP5L Missense_Mutation p.L455I 0.05 tolerated(0.47) benign(0.015) TCGA-BR-8369-01 3 121980735 121980735 C A CASR Silent p.R285R 0.09 TCGA-BR-8369-01 3 123019008 123019008 C T ADCY5 Silent p.T953T 0.11 TCGA-BR-8369-01 3 129156711 129156711 G A MBD4 Missense_Mutation p.P63S 0.15 tolerated(0.25) benign(0.012) TCGA-BR-8369-01 3 12983126 12983126 C T IQSEC1 Missense_Mutation p.R102H 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8369-01 3 1363393 1363393 A G CNTN6 Missense_Mutation p.K274R 0.09 tolerated(0.61) benign(0.02) TCGA-BR-8369-01 3 145838953 145838953 T C PLOD2 Missense_Mutation p.E95G 0.20 deleterious(0.04) benign(0.209) TCGA-BR-8369-01 3 16535246 16535246 G A RFTN1 Missense_Mutation p.T44M 0.05 tolerated(0.09) probably_damaging(0.929) TCGA-BR-8369-01 3 184584737 184584739 AAG - VPS8 Splice_Site p.X490_splice 0.09 TCGA-BR-8369-01 3 194080940 194080940 C T LRRC15 Missense_Mutation p.G284E 0.05 tolerated(1) benign(0.259) TCGA-BR-8369-01 3 32933115 32933115 C T TRIM71 Missense_Mutation p.R807C 0.18 deleterious(0.01) probably_damaging(0.978) TCGA-BR-8369-01 3 42244001 42244001 C T TRAK1 Missense_Mutation p.R501W 0.06 deleterious(0) probably_damaging(0.999) TCGA-BR-8369-01 3 42727916 42727916 G A KLHL40 Missense_Mutation p.R269Q 0.24 tolerated(0.22) benign(0.003) TCGA-BR-8369-01 3 48608296 48608296 G A COL7A1 Missense_Mutation p.R2424W 0.11 probably_damaging(1) TCGA-BR-8369-01 3 49688122 49688122 G A BSN Silent p.P532P 0.16 TCGA-BR-8369-01 3 64133061 64133061 C T PRICKLE2 Missense_Mutation p.V369I 0.11 tolerated(0.23) benign(0.031) TCGA-BR-8369-01 3 74316531 74316531 T C CNTN3 Splice_Site p.X902_splice 0.05 TCGA-BR-8369-01 3 77695243 77695243 C A ROBO2 3'UTR 0.12 TCGA-BR-8369-01 3 8673781 8673781 G T SSUH2 Silent p.T118T 0.26 TCGA-BR-8369-01 3 9057396 9057396 G A SRGAP3 Silent p.D566D 0.04 TCGA-BR-8369-01 3 9781151 9781151 G A BRPF1 Nonsense_Mutation p.W356* 0.08 TCGA-BR-8369-01 4 101338291 101338291 T C EMCN Silent p.P224P 0.14 TCGA-BR-8369-01 4 111441511 111441511 T C ENPEP Silent p.P572P 0.13 TCGA-BR-8369-01 4 123161243 123161243 T G KIAA1109 Nonsense_Mutation p.L1469* 0.09 TCGA-BR-8369-01 4 16257958 16257958 G A TAPT1-AS1 RNA 0.10 TCGA-BR-8369-01 4 1807568 1807568 C T FGFR3 Silent p.F581F 0.09 TCGA-BR-8369-01 4 5735085 5735085 G A EVC Missense_Mutation p.V209I 0.12 tolerated(1) benign(0.001) TCGA-BR-8369-01 4 5838597 5838597 G A CRMP1 Silent p.P449P 0.19 TCGA-BR-8369-01 4 77283351 77283351 C G CCDC158 Missense_Mutation p.D650H 0.09 deleterious(0) probably_damaging(0.998) TCGA-BR-8369-01 4 94138194 94138194 A C GRID2 Intron 0.20 TCGA-BR-8369-01 5 100147763 100147763 T C ST8SIA4 Missense_Mutation p.R290G 0.11 benign(0.022) TCGA-BR-8369-01 5 132097231 132097231 C T SEPT8 Missense_Mutation p.S294N 0.05 tolerated(0.43) benign(0.005) TCGA-BR-8369-01 5 147889194 147889194 C T HTR4 Missense_Mutation p.G301S 0.13 deleterious(0) probably_damaging(1) TCGA-BR-8369-01 5 175774615 175774615 G A KIAA1191 Silent p.P302P 0.12 TCGA-BR-8369-01 5 35759705 35759705 C G SPEF2 Silent p.L1168L 0.04 TCGA-BR-8369-01 5 40681868 40681868 G A PTGER4 Missense_Mutation p.R258Q 0.36 deleterious(0.05) possibly_damaging(0.507) TCGA-BR-8369-01 5 56542945 56542945 C T GPBP1 Missense_Mutation p.T243I 0.17 deleterious(0.03) benign(0.047) TCGA-BR-8369-01 5 95072640 95072640 C T RHOBTB3 Silent p.G92G 0.11 TCGA-BR-8369-01 6 129475706 129475706 A C LAMA2 Silent p.R362R 0.12 TCGA-BR-8369-01 6 130164750 130164750 T G TMEM244 Splice_Site p.X40_splice 0.13 TCGA-BR-8369-01 6 139101111 139101111 T G CCDC28A Missense_Mutation p.L194R 0.06 deleterious(0.02) probably_damaging(1) TCGA-BR-8369-01 6 25819308 25819308 A G SLC17A1 Missense_Mutation p.F202L 0.27 deleterious(0) probably_damaging(0.957) TCGA-BR-8369-01 6 32169879 32169879 G A NOTCH4 Silent p.Y1243Y 0.07 TCGA-BR-8369-01 6 32713088 32713088 A C HLA-DQA2 Missense_Mutation p.S79R 0.18 tolerated(0.2) benign(0.018) TCGA-BR-8369-01 6 34512202 34512202 C T SPDEF Missense_Mutation p.V11I 0.10 tolerated_low_confidence(0.15) unknown(0) TCGA-BR-8369-01 6 4130961 4130961 G C C6orf201 3'UTR 0.11 TCGA-BR-8369-01 6 47471062 47471062 A G CD2AP Silent p.E17E 0.11 TCGA-BR-8369-01 6 56470515 56470515 C T DST Intron 0.09 TCGA-BR-8369-01 6 56482008 56482008 T C DST Intron 0.20 TCGA-BR-8369-01 6 99771484 99771484 A T FAXC Missense_Mutation p.L220H 0.14 deleterious(0.02) possibly_damaging(0.51) TCGA-BR-8369-01 7 11446010 11446010 T G THSD7A Missense_Mutation p.E1385A 0.09 tolerated(0.08) possibly_damaging(0.559) TCGA-BR-8369-01 7 120629879 120629879 C A CPED1 Missense_Mutation p.D68E 0.10 tolerated(0.19) benign(0.008) TCGA-BR-8369-01 7 131853325 131853325 C A PLXNA4 Missense_Mutation p.G1342C 0.09 deleterious(0.04) probably_damaging(1) TCGA-BR-8369-01 7 142626594 142626594 C T TRPV5 Missense_Mutation p.R139H 0.09 tolerated(0.5) benign(0.002) TCGA-BR-8369-01 7 151257696 151257696 C T PRKAG2 Missense_Mutation p.R531Q 0.19 deleterious(0) probably_damaging(1) TCGA-BR-8369-01 7 24905012 24905012 G A OSBPL3 Nonsense_Mutation p.R208* 0.15 TCGA-BR-8369-01 7 31920359 31920359 C G PDE1C Splice_Site p.X141_splice 0.07 TCGA-BR-8369-01 7 43483816 43483816 G T HECW1 Splice_Site p.X349_splice 0.27 TCGA-BR-8369-01 7 64439916 64439916 T G ZNF117 Splice_Site p.X12_splice 0.15 TCGA-BR-8369-01 7 86415969 86415969 C T GRM3 Silent p.A287A 0.05 TCGA-BR-8369-01 8 109455882 109455882 G A EMC2 5'UTR 0.08 TCGA-BR-8369-01 8 110509266 110509266 G T PKHD1L1 Missense_Mutation p.W3482C 0.08 deleterious(0) probably_damaging(0.99) TCGA-BR-8369-01 8 113702269 113702269 T C CSMD3 Silent p.K661K 0.08 TCGA-BR-8369-01 8 114449152 114449152 C T CSMD3 5'UTR 0.07 TCGA-BR-8369-01 8 116617098 116617098 A C TRPS1 Missense_Mutation p.H366Q 0.08 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-BR-8369-01 8 116632178 116632178 T G TRPS1 Missense_Mutation p.E49D 0.12 tolerated_low_confidence(0.14) benign(0.007) TCGA-BR-8369-01 8 120577135 120577135 A C ENPP2 Missense_Mutation p.V783G 0.11 deleterious(0) probably_damaging(0.983) TCGA-BR-8369-01 8 122641302 122641302 T G HAS2 Missense_Mutation p.Q93H 0.03 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8369-01 8 13357033 13357033 A C DLC1 Missense_Mutation p.V183G 0.04 tolerated_low_confidence(0.33) benign(0.001) TCGA-BR-8369-01 8 136561128 136561128 A G KHDRBS3 Silent p.K152K 0.08 TCGA-BR-8369-01 8 143784843 143784843 G A LY6K 3'UTR 0.15 TCGA-BR-8369-01 8 143960475 143960475 C T CYP11B1 Missense_Mutation p.R123H 0.09 tolerated(0.1) benign(0.168) TCGA-BR-8369-01 8 16007773 16007773 T G MSR1 Missense_Mutation p.S316R 0.06 tolerated(0.1) possibly_damaging(0.694) TCGA-BR-8369-01 8 54147490 54147490 A C OPRK1 Missense_Mutation p.F147V 0.15 deleterious(0) possibly_damaging(0.874) TCGA-BR-8369-01 8 54669124 54669124 C T ATP6V1H Missense_Mutation p.R423Q 0.10 deleterious(0) probably_damaging(0.999) TCGA-BR-8369-01 8 86126942 86126942 T C C8orf59 Intron 0.20 TCGA-BR-8369-01 8 88885378 88885378 A C DCAF4L2 Silent p.T274T 0.04 TCGA-BR-8369-01 9 101748296 101748296 C T COL15A1 Missense_Mutation p.R184C 0.10 deleterious(0) possibly_damaging(0.759) TCGA-BR-8369-01 9 136596596 136596596 G A SARDH Missense_Mutation p.A174V 0.23 tolerated(0.99) benign(0.006) TCGA-BR-8369-01 9 139309092 139309092 G A PMPCA Silent p.R175R 0.13 TCGA-BR-8369-01 9 23762096 23762096 A G ELAVL2 Missense_Mutation p.L46P 0.14 deleterious(0) probably_damaging(1) TCGA-BR-8369-01 9 34125189 34125189 G T DCAF12 Silent p.V55V 0.12 TCGA-BR-8369-01 9 34623474 34623474 G T ARID3C Silent p.S271S 0.11 TCGA-BR-8369-01 9 73477848 73477848 T A TRPM3 Silent p.G146G 0.05 TCGA-BR-8369-01 9 77692120 77692120 C G NMRK1 Missense_Mutation p.E42Q 0.13 tolerated(0.9) benign(0.002) TCGA-BR-8369-01 9 8518139 8518139 A G PTPRD Missense_Mutation p.S418P 0.05 tolerated(0.19) probably_damaging(0.985) TCGA-BR-8369-01 9 87322806 87322806 G A NTRK2 Missense_Mutation p.R136H 0.06 tolerated(0.41) benign(0.009) TCGA-BR-8369-01 X 110653315 110653315 A C DCX Missense_Mutation p.I185M 0.12 deleterious(0) probably_damaging(0.998) TCGA-BR-8369-01 X 18660255 18660255 G A RS1 Missense_Mutation p.R182C 0.10 deleterious(0.01) probably_damaging(0.939) TCGA-BR-8369-01 X 55054262 55054262 T C ALAS2 Intron 0.12 TCGA-BR-8369-01 X 79279565 79279565 G T TBX22 Silent p.R120R 0.12 TCGA-BR-8369-01 X 79698243 79698243 A G FAM46D Missense_Mutation p.S69G 0.15 deleterious(0.04) probably_damaging(0.999) TCGA-BR-8369-01 X 83127906 83127906 A G CYLC1 Missense_Mutation p.R64G 0.13 deleterious(0.04) possibly_damaging(0.542) TCGA-BR-8369-01 X 99551362 99551362 T A PCDH19 Missense_Mutation p.K1120N 0.13 tolerated_low_confidence(0.53) benign(0.001) TCGA-BR-8370-01 10 112257894 112257894 G A DUSP5 Silent p.S5S 0.29 TCGA-BR-8370-01 10 115947870 115947870 G A TDRD1 Missense_Mutation p.G94R 0.06 tolerated(0.07) probably_damaging(0.991) TCGA-BR-8370-01 10 119044050 119044050 C A PDZD8 Missense_Mutation p.V732F 0.23 deleterious(0.01) benign(0.203) TCGA-BR-8370-01 10 73569654 73569654 G T CDH23 Missense_Mutation p.A694S 0.28 deleterious(0) possibly_damaging(0.521) TCGA-BR-8370-01 10 98744132 98744132 C T C10orf12 Silent p.A995A 0.32 TCGA-BR-8370-01 11 10515007 10515007 C T AMPD3 Missense_Mutation p.R360W 0.24 deleterious(0) possibly_damaging(0.606) TCGA-BR-8370-01 11 107463126 107463126 G T AP000889.3 Silent p.G108G 0.21 TCGA-BR-8370-01 11 124294266 124294268 AGA - OR8B4 In_Frame_Del p.F167del 0.33 TCGA-BR-8370-01 11 132290035 132290035 A T OPCML 3'UTR 0.20 TCGA-BR-8370-01 11 20907026 20907026 C A NELL1 Missense_Mutation p.N181K 0.18 deleterious(0.01) benign(0.142) TCGA-BR-8370-01 11 44077864 44077864 C A ACCSL Missense_Mutation p.L439I 0.12 deleterious(0) probably_damaging(1) TCGA-BR-8370-01 11 49208203 49208203 C A FOLH1 Missense_Mutation p.G211V 0.10 deleterious(0) probably_damaging(1) TCGA-BR-8370-01 11 5269687 5269687 C A HBG1 Missense_Mutation p.A116S 0.24 tolerated(0.1) benign(0.087) TCGA-BR-8370-01 11 56000542 56000542 G T OR5T2 Missense_Mutation p.F40L 0.27 tolerated(0.17) benign(0.021) TCGA-BR-8370-01 11 57087864 57087864 T - TNKS1BP1 Frame_Shift_Del p.G141Vfs*86 0.21 TCGA-BR-8370-01 11 57413862 57413862 C T YPEL4 Missense_Mutation p.G68R 0.14 deleterious(0) probably_damaging(0.967) TCGA-BR-8370-01 11 59856226 59856226 G T MS4A2 5'UTR 0.22 TCGA-BR-8370-01 11 9610042 9610042 G T WEE1 Missense_Mutation p.A612S 0.28 tolerated(0.63) possibly_damaging(0.702) TCGA-BR-8370-01 12 111099055 111099055 C T HVCN1 Missense_Mutation p.V74I 0.24 tolerated(0.22) benign(0.014) TCGA-BR-8370-01 12 120600695 120600695 C T GCN1L1 Missense_Mutation p.D707N 0.45 benign(0.01) TCGA-BR-8370-01 12 123011437 123011437 T C RSRC2 5'UTR 0.10 TCGA-BR-8370-01 12 129559375 129559375 C T TMEM132D Missense_Mutation p.R782Q 0.21 deleterious(0) probably_damaging(0.998) TCGA-BR-8370-01 12 25380275 25380275 T G KRAS Missense_Mutation p.Q61H 0.29 deleterious(0) benign(0.371) TCGA-BR-8370-01 12 57572341 57572341 C A LRP1 Missense_Mutation p.Q1521K 0.48 benign(0.445) TCGA-BR-8370-01 12 62954269 62954269 A T MON2 Splice_Site p.X1137_splice 0.05 TCGA-BR-8370-01 12 6670140 6670140 G A NOP2 Missense_Mutation p.T468I 0.18 tolerated(0.06) benign(0.292) TCGA-BR-8370-01 12 6692406 6692406 G A CHD4 Missense_Mutation p.R1340C 0.64 deleterious(0.02) probably_damaging(0.965) TCGA-BR-8370-01 13 114780806 114780806 C T RASA3 Silent p.E428E 0.24 TCGA-BR-8370-01 13 26106423 26106423 C A ATP8A2 Missense_Mutation p.A145E 0.14 deleterious(0.03) probably_damaging(0.995) TCGA-BR-8370-01 14 106815986 106815986 G A IGHV3-33 Silent p.G29G 0.23 TCGA-BR-8370-01 14 30068863 30068863 T C PRKD1 Missense_Mutation p.Q689R 0.15 deleterious(0) probably_damaging(0.994) TCGA-BR-8370-01 14 60976003 60976003 G A SIX6 5'UTR 0.36 TCGA-BR-8370-01 14 96904253 96904253 G A AK7 Splice_Site p.X230_splice 0.27 TCGA-BR-8370-01 15 43712659 43712659 C A TP53BP1 Missense_Mutation p.G1509W 0.54 deleterious(0) probably_damaging(1) TCGA-BR-8370-01 15 84255786 84255786 C T SH3GL3 Missense_Mutation p.H226Y 0.37 deleterious(0.02) probably_damaging(0.999) TCGA-BR-8370-01 16 25228603 25228603 C T AQP8 Missense_Mutation p.R33W 0.19 deleterious(0) possibly_damaging(0.901) TCGA-BR-8370-01 16 67683840 67683840 G T RLTPR Missense_Mutation p.R684L 0.13 deleterious(0.04) benign(0.07) TCGA-BR-8370-01 16 68844181 68844181 G A CDH1 Missense_Mutation p.D257N 0.47 deleterious(0) probably_damaging(0.999) TCGA-BR-8370-01 16 78420768 78420768 G T WWOX Missense_Mutation p.K176N 0.18 tolerated(0.13) benign(0.117) TCGA-BR-8370-01 16 88705717 88705717 G A IL17C Missense_Mutation p.R112H 0.31 deleterious(0.03) probably_damaging(0.998) TCGA-BR-8370-01 17 26686415 26686415 C T TMEM199 Silent p.N121N 0.26 TCGA-BR-8370-01 17 29662040 29662040 C T NF1 Silent p.S1999S 0.15 TCGA-BR-8370-01 17 41477713 41477713 C - ARL4D 3'UTR 0.30 TCGA-BR-8370-01 17 44073913 44073913 G A MAPT Silent p.S570S 0.32 TCGA-BR-8370-01 17 72846372 72846372 G A GRIN2C Silent p.R488R 0.23 TCGA-BR-8370-01 17 8646997 8646997 C T CCDC42 Missense_Mutation p.V81I 0.20 tolerated(0.56) benign(0.011) TCGA-BR-8370-01 18 48593405 48593406 - GT SMAD4 Frame_Shift_Ins p.Q388Cfs*28 0.16 TCGA-BR-8370-01 18 52265293 52265293 G T DYNAP Missense_Mutation p.A184S 0.16 tolerated(0.81) unknown(0) TCGA-BR-8370-01 18 7049076 7049076 C T LAMA1 Splice_Site p.X256_splice 0.40 TCGA-BR-8370-01 19 12779424 12779424 C T WDR83OS Nonsense_Mutation p.W55* 0.30 TCGA-BR-8370-01 19 21131567 21131567 G C ZNF85 Missense_Mutation p.A83P 0.18 tolerated(0.08) benign(0.019) TCGA-BR-8370-01 19 23159779 23159779 C A ZNF728 Silent p.V120V 0.22 TCGA-BR-8370-01 19 2852504 2852504 G A ZNF555 Silent p.T147T 0.09 TCGA-BR-8370-01 19 45888866 45888866 G A PPP1R13L Silent p.C734C 0.36 TCGA-BR-8370-01 19 49464847 49464847 C T BAX 3'UTR 0.31 TCGA-BR-8370-01 19 52954989 52954989 G T ZNF578 5'Flank 0.14 TCGA-BR-8370-01 19 6707512 6707512 C T C3 Missense_Mutation p.R671H 0.17 deleterious(0.01) benign(0.022) TCGA-BR-8370-01 19 9296503 9296503 G A OR7D2 Missense_Mutation p.G16R 0.45 deleterious_low_confidence(0.01) probably_damaging(0.989) TCGA-BR-8370-01 19 9578204 9578204 T C ZNF560 Silent p.S473S 0.16 TCGA-BR-8370-01 1 110255956 110255956 G A GSTM5 Intron 0.30 TCGA-BR-8370-01 1 158605726 158605726 C A SPTA1 Missense_Mutation p.K1803N 0.31 deleterious(0.01) benign(0.345) TCGA-BR-8370-01 1 159779403 159779403 G A FCRL6 Silent p.G272G 0.22 TCGA-BR-8370-01 1 173628361 173628361 G A ANKRD45 Missense_Mutation p.A66V 0.41 tolerated(0.25) possibly_damaging(0.511) TCGA-BR-8370-01 1 201355485 201355485 C T LAD1 Missense_Mutation p.R335H 0.25 tolerated(0.19) benign(0.051) TCGA-BR-8370-01 1 209933490 209933490 C T TRAF3IP3 Missense_Mutation p.R36C 0.21 deleterious(0) probably_damaging(0.999) TCGA-BR-8370-01 1 22816908 22816908 A G ZBTB40 Missense_Mutation p.E156G 0.19 tolerated(0.11) benign(0.092) TCGA-BR-8370-01 1 38226925 38226925 C G EPHA10 Intron 0.33 TCGA-BR-8370-01 20 2575516 2575516 C A TMC2 Missense_Mutation p.Q327K 0.27 tolerated(0.13) benign(0.222) TCGA-BR-8370-01 20 42744650 42744650 C A JPH2 Silent p.S555S 0.33 TCGA-BR-8370-01 20 60485655 60485655 G A CDH4 Missense_Mutation p.V456M 0.09 deleterious(0.01) benign(0.428) TCGA-BR-8370-01 21 27945305 27945305 C T CYYR1 5'UTR 0.29 TCGA-BR-8370-01 21 30434528 30434528 C T CCT8 Missense_Mutation p.R378Q 0.22 deleterious(0) probably_damaging(0.918) TCGA-BR-8370-01 21 47574136 47574136 C T FTCD Silent p.P55P 0.21 TCGA-BR-8370-01 22 23055548 23055548 G A IGLV3-21 Missense_Mutation p.D71N 0.42 tolerated(1) benign(0.001) TCGA-BR-8370-01 22 38352792 38352792 C T POLR2F Silent p.D11D 0.20 TCGA-BR-8370-01 22 41911464 41911464 C T ACO2 Silent p.G203G 0.23 TCGA-BR-8370-01 22 51010432 51010432 C T CPT1B Intron 0.23 TCGA-BR-8370-01 2 125204502 125204502 C A CNTNAP5 Missense_Mutation p.D302E 0.21 tolerated(0.24) possibly_damaging(0.522) TCGA-BR-8370-01 2 179605938 179605938 G C TTN Missense_Mutation p.L4008V 0.13 TCGA-BR-8370-01 2 182542847 182542847 G A NEUROD1 Silent p.H247H 0.24 TCGA-BR-8370-01 2 212543834 212543834 G A ERBB4 Missense_Mutation p.S522L 0.32 deleterious(0.01) benign(0.277) TCGA-BR-8370-01 2 61413957 61413957 C T AHSA2 3'UTR 0.22 TCGA-BR-8370-01 2 74709311 74709311 T G CCDC142 Missense_Mutation p.K218N 0.20 deleterious(0.03) benign(0.23) TCGA-BR-8370-01 2 96795681 96795681 T C ASTL Silent p.T252T 0.29 TCGA-BR-8370-01 2 99439319 99439321 CCG - KIAA1211L In_Frame_Del p.A472del 0.38 TCGA-BR-8370-01 3 120128474 120128474 G A FSTL1 Missense_Mutation p.R123C 0.38 deleterious(0) possibly_damaging(0.724) TCGA-BR-8370-01 3 13921366 13921366 C T WNT7A 5'UTR 0.23 TCGA-BR-8370-01 3 150834128 150834128 G A MED12L Missense_Mutation p.E35K 0.22 deleterious(0) probably_damaging(0.98) TCGA-BR-8370-01 3 151165492 151165492 C A IGSF10 Silent p.L759L 0.18 TCGA-BR-8370-01 3 19961394 19961394 G A EFHB Silent p.Y309Y 0.26 TCGA-BR-8370-01 3 27326409 27326409 C T NEK10 Silent p.P611P 0.14 TCGA-BR-8370-01 3 36780341 36780341 C T DCLK3 5'UTR 0.50 TCGA-BR-8370-01 3 41288432 41288432 G A ULK4 Silent p.A1272A 0.22 TCGA-BR-8370-01 3 42680413 42680413 G A NKTR Missense_Mutation p.V1073M 0.31 tolerated_low_confidence(0.25) possibly_damaging(0.554) TCGA-BR-8370-01 3 63981540 63981551 GGCCCAAGGAGT CGC ATXN7 In_Frame_Del p.R681_S685delinsTP 0.16 TCGA-BR-8370-01 3 69134225 69134225 C T ARL6IP5 Silent p.R9R 0.26 TCGA-BR-8370-01 3 70014308 70014308 A G MITF Missense_Mutation p.D491G 0.26 deleterious(0) probably_damaging(0.939) TCGA-BR-8370-01 4 102776247 102776247 T C BANK1 Silent p.S175S 0.32 TCGA-BR-8370-01 4 122800956 122800956 C A TRPC3 Nonsense_Mutation p.E901* 0.22 TCGA-BR-8370-01 4 134076167 134076167 C A PCDH10 Missense_Mutation p.A929D 0.24 tolerated(0.24) benign(0.085) TCGA-BR-8370-01 4 151242451 151242451 G C LRBA Missense_Mutation p.P2519A 0.25 deleterious(0.04) probably_damaging(0.997) TCGA-BR-8370-01 4 3134614 3134614 C T HTT Silent p.C823C 0.28 TCGA-BR-8370-01 4 7787971 7787971 G A AFAP1 Missense_Mutation p.P494S 0.26 deleterious(0) possibly_damaging(0.771) TCGA-BR-8370-01 4 877125 877125 C T GAK Missense_Mutation p.R461Q 0.24 deleterious(0.05) possibly_damaging(0.695) TCGA-BR-8370-01 5 101813546 101813546 C A SLCO6A1 Missense_Mutation p.K212N 0.20 deleterious(0) possibly_damaging(0.796) TCGA-BR-8370-01 5 131823676 131823676 C T IRF1 Silent p.K43K 0.09 TCGA-BR-8370-01 5 140553614 140553614 T G PCDHB7 Missense_Mutation p.F400V 0.23 deleterious_low_confidence(0.01) benign(0.113) TCGA-BR-8370-01 5 170863172 170863172 C T FGF18 Missense_Mutation p.R49C 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8370-01 5 176886156 176886156 C T DBN1 Missense_Mutation p.D359N 0.12 tolerated(0.14) benign(0.019) TCGA-BR-8370-01 5 63256626 63256626 C A HTR1A Silent p.L307L 0.18 TCGA-BR-8370-01 5 71492953 71492953 G A MAP1B Silent p.P1257P 0.14 TCGA-BR-8370-01 5 72157667 72157667 G C TNPO1 Missense_Mutation p.E130Q 0.22 tolerated(0.26) benign(0.005) TCGA-BR-8370-01 5 7897003 7897003 A G MTRR Missense_Mutation p.D595G 0.29 tolerated(0.16) benign(0.023) TCGA-BR-8370-01 5 89938513 89938513 G C GPR98 Missense_Mutation p.L767F 0.29 benign(0.06) TCGA-BR-8370-01 5 94918625 94918625 G A ARSK Missense_Mutation p.R141H 0.23 deleterious(0) probably_damaging(0.997) TCGA-BR-8370-01 6 12120918 12120918 A G HIVEP1 Missense_Mutation p.H297R 0.08 tolerated(0.13) benign(0.002) TCGA-BR-8370-01 6 26158551 26158551 G A HIST1H2BD Missense_Mutation p.D52N 0.10 deleterious_low_confidence(0.02) possibly_damaging(0.674) TCGA-BR-8370-01 6 27420700 27420700 G T ZNF184 Nonsense_Mutation p.S213* 0.28 TCGA-BR-8370-01 6 31631696 31631696 G T GPANK1 Missense_Mutation p.A187D 0.20 deleterious(0) probably_damaging(1) TCGA-BR-8370-01 6 51910975 51910975 G T PKHD1 Missense_Mutation p.Q807K 0.27 tolerated(0.05) benign(0.002) TCGA-BR-8370-01 6 75865563 75865563 C A COL12A1 Silent p.R1086R 0.31 TCGA-BR-8370-01 7 107790508 107790508 G A NRCAM Silent p.S1254S 0.19 TCGA-BR-8370-01 7 130022031 130022031 G A CPA1 Missense_Mutation p.R155H 0.24 deleterious(0) probably_damaging(0.984) TCGA-BR-8370-01 7 140285465 140285465 C A DENND2A Missense_Mutation p.G390V 0.09 deleterious(0.02) possibly_damaging(0.822) TCGA-BR-8370-01 7 151927335 151927335 A G KMT2C Silent p.F947F 0.17 TCGA-BR-8370-01 7 15652168 15652168 C T MEOX2 Silent p.A253A 0.20 TCGA-BR-8370-01 7 30492160 30492160 C T NOD1 Silent p.S291S 0.24 TCGA-BR-8370-01 7 42005114 42005114 G A GLI3 Missense_Mutation p.P1186L 0.15 tolerated(0.11) benign(0.003) TCGA-BR-8370-01 7 5923596 5923596 G A OCM Silent p.A90A 0.15 TCGA-BR-8370-01 7 87179298 87179298 G T ABCB1 Missense_Mutation p.Q475K 0.22 deleterious(0) probably_damaging(0.98) TCGA-BR-8370-01 7 92763591 92763591 C A SAMD9L Missense_Mutation p.W565L 0.26 tolerated(0.09) benign(0.001) TCGA-BR-8370-01 8 114389091 114389091 G A CSMD3 Intron 0.41 TCGA-BR-8370-01 8 140631116 140631116 C T KCNK9 Silent p.T170T 0.19 TCGA-BR-8370-01 8 19362779 19362779 C A CSGALNACT1 Missense_Mutation p.E189D 0.21 tolerated(0.32) benign(0.02) TCGA-BR-8370-01 8 24775106 24775106 G A NEFM Missense_Mutation p.A580T 0.09 deleterious(0.02) unknown(0) TCGA-BR-8370-01 8 25287389 25287389 G C KCTD9 Nonsense_Mutation p.S385* 0.35 TCGA-BR-8370-01 8 2823423 2823423 C T CSMD1 Missense_Mutation p.D3052N 0.24 possibly_damaging(0.771) TCGA-BR-8370-01 8 59058836 59058836 G T FAM110B Missense_Mutation p.S16I 0.12 tolerated(0.05) benign(0.378) TCGA-BR-8370-01 8 72975180 72975180 C A TRPA1 Splice_Site p.X221_splice 0.16 TCGA-BR-8370-01 9 125273810 125273810 C A OR1J2 Missense_Mutation p.H244N 0.23 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-BR-8370-01 9 13122132 13122132 G T MPDZ Missense_Mutation p.A1664E 0.23 deleterious(0) probably_damaging(0.997) TCGA-BR-8370-01 9 16436468 16436468 C A BNC2 Missense_Mutation p.S575I 0.24 deleterious(0) benign(0.206) TCGA-BR-8370-01 9 27950590 27950590 C A LINGO2 Missense_Mutation p.G27V 0.40 deleterious(0.04) benign(0.207) TCGA-BR-8370-01 9 420472 420473 - A DOCK8 Frame_Shift_Ins p.N1306Kfs*3 0.23 TCGA-BR-8370-01 9 72435945 72435945 C T C9orf135 Silent p.S50S 0.14 TCGA-BR-8370-01 9 72785644 72785644 T A MAMDC2 Intron 0.21 TCGA-BR-8370-01 9 96082763 96082763 G A WNK2 3'Flank 0.16 TCGA-BR-8370-01 X 103216703 103216703 A C TMSB15B 5'Flank 0.73 TCGA-BR-8370-01 X 118220735 118220735 C T KIAA1210 Silent p.S1486S 0.13 TCGA-BR-8371-01 10 75883653 75883653 C T AP3M1 Missense_Mutation p.R391H 0.04 deleterious(0.01) benign(0.427) TCGA-BR-8371-01 12 130919389 130919389 C T RIMBP2 Missense_Mutation p.A698T 0.07 tolerated(0.19) benign(0.03) TCGA-BR-8371-01 12 58144455 58144455 C T CDK4 Missense_Mutation p.E206K 0.05 deleterious(0) probably_damaging(0.956) TCGA-BR-8371-01 12 70049306 70049306 T G BEST3 Missense_Mutation p.H463P 0.06 deleterious(0.02) benign(0.352) TCGA-BR-8371-01 12 8245589 8245589 C T NECAP1 Missense_Mutation p.A205V 0.10 tolerated(0.3) benign(0.017) TCGA-BR-8371-01 13 26343262 26343262 C T ATP8A2 Silent p.D821D 0.06 TCGA-BR-8371-01 16 53860211 53860211 G C FTO Missense_Mutation p.G187R 0.06 tolerated(0.52) benign(0.015) TCGA-BR-8371-01 16 68718494 68718494 T A CDH3 Missense_Mutation p.D397E 0.06 deleterious(0) possibly_damaging(0.894) TCGA-BR-8371-01 17 10355524 10355524 C T MYH4 Missense_Mutation p.G1158S 0.04 deleterious(0.04) probably_damaging(1) TCGA-BR-8371-01 17 39658547 39658547 G A KRT13 Intron 0.09 TCGA-BR-8371-01 19 48342758 48342758 C A CRX Missense_Mutation p.P145H 0.06 deleterious(0.02) probably_damaging(0.94) TCGA-BR-8371-01 1 214557344 214557344 A G PTPN14 Silent p.H618H 0.08 TCGA-BR-8371-01 20 3240640 3240640 G A C20orf194 Missense_Mutation p.P970S 0.07 deleterious(0.02) probably_damaging(0.999) TCGA-BR-8371-01 21 33065669 33065669 C T SCAF4 Missense_Mutation p.R484Q 0.06 benign(0.238) TCGA-BR-8371-01 21 44524474 44524474 C T U2AF1 Missense_Mutation p.R28H 0.10 deleterious(0.01) possibly_damaging(0.481) TCGA-BR-8371-01 3 1427322 1427322 G A CNTN6 Missense_Mutation p.E849K 0.09 deleterious(0.01) possibly_damaging(0.648) TCGA-BR-8371-01 3 196534697 196534697 T C PAK2 Silent p.G207G 0.08 TCGA-BR-8371-01 3 52440318 52440318 A G BAP1 Missense_Mutation p.L245P 0.14 deleterious(0) probably_damaging(0.99) TCGA-BR-8371-01 6 17421835 17421835 C T CAP2 Missense_Mutation p.R17C 0.11 deleterious(0.02) probably_damaging(1) TCGA-BR-8371-01 6 62407141 62407141 T C KHDRBS2 Missense_Mutation p.D304G 0.10 deleterious(0) benign(0.104) TCGA-BR-8371-01 6 70071099 70071099 C G BAI3 Missense_Mutation p.P1312A 0.07 deleterious(0) probably_damaging(0.994) TCGA-BR-8371-01 8 131916177 131916177 A C ADCY8 Silent p.T584T 0.06 TCGA-BR-8371-01 9 117840372 117840372 C T TNC Missense_Mutation p.V842M 0.11 tolerated(0.09) possibly_damaging(0.807) TCGA-BR-8371-01 X 135049608 135049608 A G MMGT1 Silent p.G59G 0.11 TCGA-BR-8371-01 X 30254145 30254145 A G MAGEB3 Missense_Mutation p.K35R 0.12 tolerated(0.07) benign(0.015) TCGA-BR-8372-01 10 100003868 100003868 A G R3HCC1L Missense_Mutation p.K764E 0.22 deleterious(0.01) probably_damaging(0.953) TCGA-BR-8372-01 10 102051105 102051105 C A PKD2L1 Missense_Mutation p.D654Y 0.31 deleterious(0) possibly_damaging(0.813) TCGA-BR-8372-01 10 102587324 102587324 C - PAX2 Frame_Shift_Del p.R403Gfs*37 0.27 TCGA-BR-8372-01 10 102987157 102987157 G - LBX1 Frame_Shift_Del p.P239Qfs*56 0.24 TCGA-BR-8372-01 10 102987448 102987448 T - LBX1 Frame_Shift_Del p.K142Sfs*46 0.10 TCGA-BR-8372-01 10 102988546 102988546 C A LBX1 Silent p.A9A 0.32 TCGA-BR-8372-01 10 103295124 103295124 G A BTRC Missense_Mutation p.S454N 0.34 tolerated(0.08) benign(0.005) TCGA-BR-8372-01 10 103310572 103310573 - C BTRC Frame_Shift_Ins p.R594Pfs*27 0.33 TCGA-BR-8372-01 10 103826899 103826899 A G HPS6 Silent p.E556E 0.24 TCGA-BR-8372-01 10 104377154 104377154 A G SUFU Missense_Mutation p.H422R 0.26 tolerated(0.2) possibly_damaging(0.544) TCGA-BR-8372-01 10 106059080 106059080 A G GSTO2 3'UTR 0.08 TCGA-BR-8372-01 10 106959852 106959852 A G SORCS3 Missense_Mutation p.Q702R 0.42 tolerated(0.27) benign(0.001) TCGA-BR-8372-01 10 11356215 11356215 C T CELF2 Silent p.L364L 0.26 TCGA-BR-8372-01 10 115413781 115413781 T G NRAP Missense_Mutation p.E155A 0.28 tolerated(0.06) benign(0.437) TCGA-BR-8372-01 10 116702484 116702484 G A TRUB1 Missense_Mutation p.A123T 0.35 tolerated(0.51) benign(0.111) TCGA-BR-8372-01 10 118687324 118687324 G - KIAA1598 Frame_Shift_Del p.P364Lfs*13 0.25 TCGA-BR-8372-01 10 122348993 122348993 G A PPAPDC1A Silent p.G265G 0.23 TCGA-BR-8372-01 10 124050682 124050682 T G BTBD16 Missense_Mutation p.I188S 0.07 tolerated(0.05) possibly_damaging(0.784) TCGA-BR-8372-01 10 124711510 124711510 T - C10orf88 Frame_Shift_Del p.N134Ifs*2 0.43 TCGA-BR-8372-01 10 124907831 124907831 C T HMX2 5'UTR 0.33 TCGA-BR-8372-01 10 125447685 125447685 G A GPR26 3'UTR 0.42 TCGA-BR-8372-01 10 128193497 128193497 C T C10orf90 Missense_Mutation p.R91H 0.38 tolerated(0.84) benign(0.001) TCGA-BR-8372-01 10 12870861 12870861 C T CAMK1D Missense_Mutation p.T378M 0.33 deleterious_low_confidence(0.02) possibly_damaging(0.541) TCGA-BR-8372-01 10 129537128 129537128 A G FOXI2 Missense_Mutation p.T286A 0.31 tolerated(0.73) benign(0) TCGA-BR-8372-01 10 134014423 134014423 C T DPYSL4 Missense_Mutation p.A349V 0.25 deleterious(0) benign(0.051) TCGA-BR-8372-01 10 134628238 134628238 G - TTC40 Frame_Shift_Del p.R2401Gfs*9 0.37 TCGA-BR-8372-01 10 17277877 17277877 T C VIM Missense_Mutation p.L421P 0.16 deleterious(0.05) probably_damaging(0.935) TCGA-BR-8372-01 10 17363320 17363321 - T ST8SIA6 Frame_Shift_Ins p.A252Sfs*40 0.36 TCGA-BR-8372-01 10 18828137 18828137 G A CACNB2 Intron 0.32 TCGA-BR-8372-01 10 21097468 21097468 C T NEBL Missense_Mutation p.S911N 0.24 deleterious(0.02) benign(0.401) TCGA-BR-8372-01 10 25010939 25010939 A C ARHGAP21 5'UTR 0.36 TCGA-BR-8372-01 10 267248 267248 G C ZMYND11 Missense_Mutation p.E130D 0.29 tolerated(0.57) benign(0.001) TCGA-BR-8372-01 10 27306639 27306639 T C ANKRD26 Missense_Mutation p.E1433G 0.10 deleterious(0) possibly_damaging(0.787) TCGA-BR-8372-01 10 27324065 27324065 T C ANKRD26 Missense_Mutation p.Q1105R 0.06 deleterious(0.03) probably_damaging(0.997) TCGA-BR-8372-01 10 27425268 27425268 T C YME1L1 Silent p.R216R 0.39 TCGA-BR-8372-01 10 28284024 28284024 A G ARMC4 Silent p.H16H 0.35 TCGA-BR-8372-01 10 29760116 29760116 C - SVIL Frame_Shift_Del p.M1863Wfs*44 0.32 TCGA-BR-8372-01 10 43297643 43297643 C T BMS1 Missense_Mutation p.A769V 0.38 deleterious(0) probably_damaging(0.971) TCGA-BR-8372-01 10 43316002 43316002 G T BMS1 Missense_Mutation p.R939L 0.26 deleterious(0.01) probably_damaging(0.938) TCGA-BR-8372-01 10 43609082 43609082 C T RET Missense_Mutation p.P613L 0.22 deleterious(0.04) possibly_damaging(0.738) TCGA-BR-8372-01 10 49450202 49450202 A G FRMPD2 Splice_Site p.X189_splice 0.37 TCGA-BR-8372-01 10 55566601 55566601 A G PCDH15 Missense_Mutation p.L1595S 0.32 deleterious_low_confidence(0.03) benign(0.016) TCGA-BR-8372-01 10 5827903 5827903 T C GDI2 Missense_Mutation p.T167A 0.06 deleterious(0.03) benign(0.016) TCGA-BR-8372-01 10 5966439 5966439 A - FBXO18 Frame_Shift_Del p.K907Nfs*4 0.28 TCGA-BR-8372-01 10 63851281 63851281 A G ARID5B Missense_Mutation p.M687V 0.25 deleterious(0) possibly_damaging(0.448) TCGA-BR-8372-01 10 64966903 64966903 T - JMJD1C Frame_Shift_Del p.N1509Ifs*14 0.28 TCGA-BR-8372-01 10 65225233 65225233 A G JMJD1C Intron 0.50 TCGA-BR-8372-01 10 70182529 70182529 A G DNA2 Missense_Mutation p.L862P 0.36 deleterious(0) probably_damaging(1) TCGA-BR-8372-01 10 74834629 74834629 T C P4HA1 Missense_Mutation p.I5V 0.40 tolerated(1) benign(0) TCGA-BR-8372-01 10 75564621 75564621 A G NDST2 Missense_Mutation p.C585R 0.37 deleterious(0) probably_damaging(0.997) TCGA-BR-8372-01 10 75884257 75884257 A T AP3M1 Missense_Mutation p.I346N 0.32 deleterious(0) benign(0.291) TCGA-BR-8372-01 10 76780463 76780463 A G KAT6B Missense_Mutation p.H918R 0.30 benign(0.002) TCGA-BR-8372-01 10 79010963 79010963 C A KCNMA1 Missense_Mutation p.D198Y 0.34 deleterious(0) probably_damaging(0.97) TCGA-BR-8372-01 10 85967975 85967975 G A CDHR1 Missense_Mutation p.V337I 0.08 tolerated(0.09) benign(0.426) TCGA-BR-8372-01 10 88717266 88717266 G C MMRN2 Silent p.G11G 0.30 TCGA-BR-8372-01 10 890939 890939 T - LARP4B Frame_Shift_Del p.T163Hfs*47 0.27 TCGA-BR-8372-01 10 90366696 90366696 C T LIPJ 3'UTR 0.27 TCGA-BR-8372-01 10 93579761 93579761 T C TNKS2 Silent p.H233H 0.40 TCGA-BR-8372-01 10 96336485 96336485 C T HELLS Missense_Mutation p.R319W 0.08 deleterious(0.02) possibly_damaging(0.67) TCGA-BR-8372-01 10 97373858 97373858 T C ALDH18A1 Missense_Mutation p.I556V 0.36 tolerated(0.06) benign(0.043) TCGA-BR-8372-01 10 97626193 97626193 G A ENTPD1 3'UTR 0.23 TCGA-BR-8372-01 11 100999009 100999009 C T PGR Missense_Mutation p.V265I 0.31 deleterious_low_confidence(0.04) benign(0.193) TCGA-BR-8372-01 11 103178458 103178458 T C DYNC2H1 Silent p.N3804N 0.30 TCGA-BR-8372-01 11 103907434 103907434 G A DDI1 5'UTR 0.34 TCGA-BR-8372-01 11 10500145 10500145 C - AMPD3 Frame_Shift_Del p.P109Rfs*60 0.30 TCGA-BR-8372-01 11 107676145 107676145 C T SLC35F2 Missense_Mutation p.S224N 0.25 tolerated(0.06) benign(0.259) TCGA-BR-8372-01 11 10785668 10785668 A G CTR9 Missense_Mutation p.K402E 0.34 tolerated(0.07) benign(0.067) TCGA-BR-8372-01 11 111612831 111612831 A G PPP2R1B Silent p.L579L 0.28 TCGA-BR-8372-01 11 111796714 111796714 C T C11orf52 Missense_Mutation p.R55W 0.39 deleterious(0.01) possibly_damaging(0.799) TCGA-BR-8372-01 11 111796981 111796981 A G C11orf52 3'UTR 0.35 TCGA-BR-8372-01 11 111952698 111952698 T C C11orf57 Intron 0.25 TCGA-BR-8372-01 11 117374594 117374594 G T DSCAML1 Silent p.T835T 0.29 TCGA-BR-8372-01 11 118947751 118947751 T C VPS11 Silent p.Y460Y 0.35 TCGA-BR-8372-01 11 12245002 12245002 C T MICAL2 Silent p.L498L 0.27 TCGA-BR-8372-01 11 122775058 122775058 A - C11orf63 Frame_Shift_Del p.N259Tfs*37 0.27 TCGA-BR-8372-01 11 122817304 122817304 T C C11orf63 Missense_Mutation p.L578P 0.07 deleterious(0) probably_damaging(1) TCGA-BR-8372-01 11 123900397 123900397 C - OR10G8 Frame_Shift_Del p.L25Sfs*22 0.26 TCGA-BR-8372-01 11 124294529 124294529 T C OR8B4 Missense_Mutation p.K80R 0.07 tolerated_low_confidence(0.06) benign(0.193) TCGA-BR-8372-01 11 124561622 124561622 A C SPA17 Missense_Mutation p.K86Q 0.38 tolerated(0.52) benign(0.035) TCGA-BR-8372-01 11 125887121 125887121 G T CDON Missense_Mutation p.P264T 0.30 tolerated(0.59) benign(0.014) TCGA-BR-8372-01 11 126145767 126145767 T C FOXRED1 Splice_Site p.X270_splice 0.28 TCGA-BR-8372-01 11 1272703 1272703 G A MUC5B Missense_Mutation p.A4865T 0.28 unknown(0) TCGA-BR-8372-01 11 1275371 1275371 C A MUC5B Silent p.T5089T 0.25 TCGA-BR-8372-01 11 128840436 128840436 C T ARHGAP32 Missense_Mutation p.A1544T 0.35 tolerated_low_confidence(0.56) benign(0.003) TCGA-BR-8372-01 11 129739494 129739494 T C NFRKB Silent p.V1167V 0.33 TCGA-BR-8372-01 11 134010644 134010644 T - JAM3 Frame_Shift_Del p.F80Lfs*21 0.24 TCGA-BR-8372-01 11 14498463 14498463 A G COPB1 Splice_Site p.X485_splice 0.27 TCGA-BR-8372-01 11 14865502 14865502 C T PDE3B Missense_Mutation p.A817V 0.34 deleterious(0) probably_damaging(1) TCGA-BR-8372-01 11 1651322 1651322 T C KRTAP5-5 Silent p.C84C 0.13 TCGA-BR-8372-01 11 17419241 17419241 T C ABCC8 Missense_Mutation p.Y1286C 0.36 deleterious(0) probably_damaging(1) TCGA-BR-8372-01 11 17424231 17424231 T C ABCC8 Silent p.G1209G 0.06 TCGA-BR-8372-01 11 18638501 18638501 T - SPTY2D1 Frame_Shift_Del p.D33Tfs*23 0.30 TCGA-BR-8372-01 11 18956195 18956195 G A MRGPRX1 Missense_Mutation p.A46V 0.41 tolerated(0.08) benign(0.38) TCGA-BR-8372-01 11 2154066 2154066 C T IGF2 3'UTR 0.38 TCGA-BR-8372-01 11 2609949 2609949 A - KCNQ1 Frame_Shift_Del p.K422Sfs*10 0.24 TCGA-BR-8372-01 11 293653 293653 A G ATHL1 Missense_Mutation p.S514G 0.17 deleterious(0.01) benign(0.297) TCGA-BR-8372-01 11 30915848 30915848 T C DCDC1 Missense_Mutation p.T1614A 0.27 tolerated(0.12) benign(0.388) TCGA-BR-8372-01 11 31812409 31812409 C T PAX6 Splice_Site p.X359_splice 0.31 TCGA-BR-8372-01 11 32637520 32637520 T - CCDC73 Frame_Shift_Del p.E448Kfs*5 0.33 TCGA-BR-8372-01 11 35513670 35513670 C - PAMR1 Frame_Shift_Del p.G101Vfs*8 0.25 TCGA-BR-8372-01 11 36458986 36458986 A T PRR5L Missense_Mutation p.E135V 0.33 deleterious(0) probably_damaging(1) TCGA-BR-8372-01 11 36654929 36654929 T C C11orf74 Missense_Mutation p.Y78H 0.29 tolerated(1) benign(0.001) TCGA-BR-8372-01 11 44286581 44286581 A C ALX4 Silent p.S353S 0.16 TCGA-BR-8372-01 11 46726476 46726477 - C ZNF408 Frame_Shift_Ins p.C411Lfs*30 0.25 TCGA-BR-8372-01 11 47312236 47312236 G - MADD Frame_Shift_Del p.D1079Tfs*8 0.31 TCGA-BR-8372-01 11 47827804 47827804 A T NUP160 Missense_Mutation p.I836K 0.29 tolerated(0.11) benign(0.04) TCGA-BR-8372-01 11 48161293 48161293 C - PTPRJ Frame_Shift_Del p.T805Pfs*29 0.20 TCGA-BR-8372-01 11 4825323 4825323 C T OR52R1 Silent p.Q96Q 0.25 TCGA-BR-8372-01 11 48266720 48266720 T C OR4X2 Missense_Mutation p.I22T 0.06 deleterious(0.04) benign(0.131) TCGA-BR-8372-01 11 4869564 4869564 G T OR51S1 Missense_Mutation p.P292Q 0.29 deleterious(0) probably_damaging(0.958) TCGA-BR-8372-01 11 5020966 5020966 A G OR51L1 Missense_Mutation p.I252V 0.25 tolerated(0.41) benign(0.359) TCGA-BR-8372-01 11 5474940 5474940 C A OR51I2 Silent p.S74S 0.36 TCGA-BR-8372-01 11 55065032 55065033 TT - TRIM51HP RNA 0.47 TCGA-BR-8372-01 11 55065356 55065356 C A TRIM51HP RNA 0.35 TCGA-BR-8372-01 11 55541797 55541797 G T OR5D13 Missense_Mutation p.R295M 0.31 deleterious(0) probably_damaging(0.992) TCGA-BR-8372-01 11 5701098 5701098 G A TRIM5 Missense_Mutation p.L104F 0.37 deleterious(0.03) possibly_damaging(0.833) TCGA-BR-8372-01 11 57569589 57569589 A - CTNND1 Frame_Shift_Del p.N449Tfs*49 0.30 TCGA-BR-8372-01 11 5878034 5878034 C A OR52E8 Missense_Mutation p.R300M 0.29 deleterious(0) probably_damaging(0.926) TCGA-BR-8372-01 11 59271395 59271395 C G OR4D11 Missense_Mutation p.S116C 0.32 deleterious(0.01) probably_damaging(0.977) TCGA-BR-8372-01 11 59480736 59480736 C T OR10V1 Missense_Mutation p.V195I 0.21 tolerated(0.4) benign(0.045) TCGA-BR-8372-01 11 59857235 59857235 T G MS4A2 Missense_Mutation p.S43A 0.36 tolerated(0.39) benign(0.012) TCGA-BR-8372-01 11 60274617 60274617 A G MS4A12 3'UTR 0.41 TCGA-BR-8372-01 11 61070097 61070097 G - DDB1 Frame_Shift_Del p.T1024Hfs*13 0.25 TCGA-BR-8372-01 11 61732984 61732984 A G FTH1 Missense_Mutation p.Y40H 0.28 tolerated(0.05) benign(0.052) TCGA-BR-8372-01 11 62348933 62348933 A G TUT1 Silent p.L210L 0.13 TCGA-BR-8372-01 11 62393815 62393815 A - GANAB Frame_Shift_Del p.V895Sfs*21 0.23 TCGA-BR-8372-01 11 63233754 63233754 C T HRASLS5 Missense_Mutation p.C192Y 0.24 tolerated(0.08) probably_damaging(1) TCGA-BR-8372-01 11 63486576 63486576 C T RTN3 Missense_Mutation p.A201V 0.41 tolerated(0.25) benign(0.015) TCGA-BR-8372-01 11 63681570 63681570 G A RCOR2 Silent p.R249R 0.42 TCGA-BR-8372-01 11 64606559 64606559 C T CDC42BPG Silent p.T274T 0.27 TCGA-BR-8372-01 11 64662521 64662521 C - ATG2A Frame_Shift_Del p.G1914Afs*63 0.32 TCGA-BR-8372-01 11 64677288 64677288 G T ATG2A Missense_Mutation p.P658T 0.40 deleterious(0) possibly_damaging(0.607) TCGA-BR-8372-01 11 64897506 64897508 GGA - SYVN1 In_Frame_Del p.P459del 0.53 TCGA-BR-8372-01 11 65265584 65265584 A - MALAT1 RNA 0.16 TCGA-BR-8372-01 11 65272645 65272645 T A MALAT1 RNA 0.44 TCGA-BR-8372-01 11 65349955 65349955 A G EHBP1L1 Missense_Mutation p.I604M 0.13 deleterious(0.02) possibly_damaging(0.491) TCGA-BR-8372-01 11 65425862 65425862 G A RELA Missense_Mutation p.A258V 0.32 tolerated(0.5) benign(0.014) TCGA-BR-8372-01 11 65637334 65637336 AGG - EFEMP2 In_Frame_Del p.S240del 0.42 TCGA-BR-8372-01 11 65810644 65810644 G A GAL3ST3 Silent p.G210G 0.26 TCGA-BR-8372-01 11 66002804 66002804 T C PACS1 Missense_Mutation p.Y713H 0.09 deleterious(0.01) possibly_damaging(0.599) TCGA-BR-8372-01 11 66026206 66026206 C T KLC2 Silent p.A47A 0.31 TCGA-BR-8372-01 11 66360309 66360309 T C CCDC87 Missense_Mutation p.S60G 0.23 deleterious(0.03) benign(0.01) TCGA-BR-8372-01 11 66618281 66618281 G A PC Silent p.G779G 0.46 TCGA-BR-8372-01 11 67196696 67196696 G - RPS6KB2 Frame_Shift_Del p.G77Afs*22 0.25 TCGA-BR-8372-01 11 67200863 67200863 G T RPS6KB2 Missense_Mutation p.G284V 0.31 deleterious(0.01) possibly_damaging(0.772) TCGA-BR-8372-01 11 67234711 67234711 C T TMEM134 Intron 0.19 TCGA-BR-8372-01 11 67766651 67766651 A G UNC93B1 Missense_Mutation p.F227L 0.12 tolerated(1) benign(0.002) TCGA-BR-8372-01 11 68522368 68522368 T C CPT1A 3'UTR 0.29 TCGA-BR-8372-01 11 70028683 70028683 A G ANO1 Missense_Mutation p.M827V 0.11 deleterious(0.01) possibly_damaging(0.771) TCGA-BR-8372-01 11 72945484 72945484 G A P2RY2 Missense_Mutation p.A94T 0.11 deleterious(0) possibly_damaging(0.613) TCGA-BR-8372-01 11 73806439 73806439 T C C2CD3 Silent p.G998G 0.08 TCGA-BR-8372-01 11 76750860 76750860 A G B3GNT6 Missense_Mutation p.I89V 0.38 tolerated(0.39) benign(0.138) TCGA-BR-8372-01 11 78369151 78369151 G A TENM4 Silent p.S2754S 0.26 TCGA-BR-8372-01 11 88068108 88068108 A - CTSC Frame_Shift_Del p.F105Lfs*10 0.30 TCGA-BR-8372-01 11 9005620 9005620 T C NRIP3 Missense_Mutation p.K205R 0.10 deleterious(0.04) possibly_damaging(0.793) TCGA-BR-8372-01 11 9100944 9100944 A G SCUBE2 Silent p.G123G 0.35 TCGA-BR-8372-01 11 93465186 93465186 A G KIAA1731 3'Flank 0.33 TCGA-BR-8372-01 11 94918548 94918548 T C SESN3 Missense_Mutation p.I212V 0.10 tolerated(0.16) benign(0.156) TCGA-BR-8372-01 11 9875116 9875116 T C SBF2 Missense_Mutation p.H836R 0.38 deleterious(0) probably_damaging(0.994) TCGA-BR-8372-01 12 100717349 100717349 A G SCYL2 Missense_Mutation p.Y481C 0.28 deleterious(0.03) possibly_damaging(0.75) TCGA-BR-8372-01 12 101773301 101773301 G T UTP20 Missense_Mutation p.A2517S 0.10 tolerated(0.22) benign(0.02) TCGA-BR-8372-01 12 1025454 1025454 G A RAD52 Intron 0.22 TCGA-BR-8372-01 12 104715036 104715036 T C TXNRD1 Missense_Mutation p.I386T 0.23 deleterious(0) probably_damaging(0.998) TCGA-BR-8372-01 12 105198777 105198777 A - SLC41A2 3'UTR 0.36 TCGA-BR-8372-01 12 107713788 107713788 C T BTBD11 Silent p.N357N 0.39 TCGA-BR-8372-01 12 108169151 108169151 C T ASCL4 Silent p.S53S 0.36 TCGA-BR-8372-01 12 110344435 110344435 A - TCHP Frame_Shift_Del p.K174Nfs*26 0.23 TCGA-BR-8372-01 12 110427530 110427530 A G GIT2 Silent p.S88S 0.25 TCGA-BR-8372-01 12 112193494 112193494 T C ACAD10 Missense_Mutation p.M1026T 0.38 deleterious(0) possibly_damaging(0.801) TCGA-BR-8372-01 12 112525546 112525546 A G NAA25 Missense_Mutation p.Y115H 0.15 deleterious(0) possibly_damaging(0.867) TCGA-BR-8372-01 12 112650388 112650388 T C HECTD4 Missense_Mutation p.K2365R 0.13 probably_damaging(0.943) TCGA-BR-8372-01 12 113314515 113314515 T C RPH3A Missense_Mutation p.Y339H 0.38 tolerated(0.43) possibly_damaging(0.629) TCGA-BR-8372-01 12 113565943 113565943 C - RASAL1 Frame_Shift_Del p.E55Rfs*35 0.28 TCGA-BR-8372-01 12 113830824 113830824 G A SDS Silent p.C303C 0.21 TCGA-BR-8372-01 12 113835115 113835115 C T SDS Missense_Mutation p.G170R 0.30 deleterious(0) probably_damaging(1) TCGA-BR-8372-01 12 11420716 11420716 G A PRB3 Missense_Mutation p.P156L 0.20 deleterious(0.04) unknown(0) TCGA-BR-8372-01 12 11420779 11420779 G A PRB3 Missense_Mutation p.P135L 0.28 deleterious(0.04) unknown(0) TCGA-BR-8372-01 12 114841672 114841672 G A TBX5 Missense_Mutation p.A11V 0.54 deleterious(0.04) benign(0.08) TCGA-BR-8372-01 12 11546360 11546360 G A PRB2 Missense_Mutation p.P218S 0.32 tolerated(0.4) unknown(0) TCGA-BR-8372-01 12 116429071 116429073 GGA - MED13L In_Frame_Del p.L1229del 0.24 TCGA-BR-8372-01 12 117595816 117595816 G A FBXO21 Missense_Mutation p.A467V 0.33 tolerated(0.18) possibly_damaging(0.644) TCGA-BR-8372-01 12 117768159 117768159 T C NOS1 Missense_Mutation p.Q239R 0.27 deleterious_low_confidence(0.03) possibly_damaging(0.501) TCGA-BR-8372-01 12 119540084 119540084 C A SRRM4 Missense_Mutation p.P59T 0.33 deleterious_low_confidence(0.05) unknown(0) TCGA-BR-8372-01 12 121014523 121014523 C T RNF10 3'UTR 0.28 TCGA-BR-8372-01 12 121878620 121878620 T C KDM2B Silent p.P1203P 0.26 TCGA-BR-8372-01 12 121881856 121881856 G A KDM2B Missense_Mutation p.R804W 0.35 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-BR-8372-01 12 122217517 122217517 C T RHOF Missense_Mutation p.A175T 0.27 deleterious(0) probably_damaging(0.999) TCGA-BR-8372-01 12 122735574 122735574 A G VPS33A Missense_Mutation p.Y186H 0.29 deleterious(0) probably_damaging(0.999) TCGA-BR-8372-01 12 123793937 123793937 T C SBNO1 Missense_Mutation p.R1184G 0.30 deleterious(0) possibly_damaging(0.606) TCGA-BR-8372-01 12 130647985 130647985 G A FZD10 Silent p.P166P 0.30 TCGA-BR-8372-01 12 131593316 131593316 T C GPR133 Silent p.S645S 0.31 TCGA-BR-8372-01 12 132199458 132199458 G A SFSWAP Silent p.P160P 0.27 TCGA-BR-8372-01 12 132400493 132400493 G T ULK1 Missense_Mutation p.S556I 0.31 deleterious(0.04) probably_damaging(0.996) TCGA-BR-8372-01 12 132528817 132528817 G A EP400 Silent p.A2182A 0.29 TCGA-BR-8372-01 12 132539741 132539741 T C EP400 Silent p.P2624P 0.56 TCGA-BR-8372-01 12 133733304 133733304 G A ZNF10 Missense_Mutation p.C491Y 0.35 deleterious(0) possibly_damaging(0.814) TCGA-BR-8372-01 12 133768141 133768141 G A ZNF268 Missense_Mutation p.A101T 0.09 tolerated(0.35) possibly_damaging(0.732) TCGA-BR-8372-01 12 14849285 14849285 C A GUCY2C Missense_Mutation p.G33V 0.29 deleterious(0.04) benign(0.021) TCGA-BR-8372-01 12 16516905 16516906 - T MGST1 Frame_Shift_Ins p.V136Cfs*17 0.30 TCGA-BR-8372-01 12 176562 176562 C A IQSEC3 Missense_Mutation p.P172T 0.27 tolerated_low_confidence(0.06) benign(0.057) TCGA-BR-8372-01 12 19498775 19498775 G T PLEKHA5 Splice_Site p.X888_splice 0.20 TCGA-BR-8372-01 12 19514518 19514518 A - PLEKHA5 Frame_Shift_Del p.T1165Lfs*17 0.32 TCGA-BR-8372-01 12 21350012 21350012 A - SLCO1B1 Frame_Shift_Del p.E289Kfs*23 0.22 TCGA-BR-8372-01 12 21790024 21790024 G A LDHB Missense_Mutation p.P273L 0.30 tolerated(0.05) benign(0.44) TCGA-BR-8372-01 12 22068696 22068696 T - ABCC9 Frame_Shift_Del p.K241Sfs*5 0.27 TCGA-BR-8372-01 12 23728718 23728718 T C SOX5 Missense_Mutation p.K407E 0.41 tolerated(0.09) benign(0.345) TCGA-BR-8372-01 12 25297532 25297532 G C CASC1 Missense_Mutation p.R257G 0.32 deleterious(0) probably_damaging(1) TCGA-BR-8372-01 12 27908478 27908478 T - MRPS35 3'UTR 0.23 TCGA-BR-8372-01 12 29524548 29524548 T C ERGIC2 Missense_Mutation p.K7E 0.48 tolerated(0.06) benign(0.007) TCGA-BR-8372-01 12 32793527 32793527 A G FGD4 3'UTR 0.35 TCGA-BR-8372-01 12 34175411 34175411 G A ALG10 5'UTR 0.42 TCGA-BR-8372-01 12 3788146 3788146 G A EFCAB4B Silent p.G153G 0.41 TCGA-BR-8372-01 12 40714947 40714947 C A LRRK2 Silent p.I1709I 0.36 TCGA-BR-8372-01 12 40748201 40748201 T C LRRK2 Missense_Mutation p.V2226A 0.27 tolerated(0.41) benign(0.001) TCGA-BR-8372-01 12 42491722 42491722 A - GXYLT1 Frame_Shift_Del p.H327Ifs*59 0.22 TCGA-BR-8372-01 12 47630062 47630062 C T PCED1B Missense_Mutation p.R406C 0.32 tolerated(0.05) possibly_damaging(0.683) TCGA-BR-8372-01 12 48185709 48185709 C T HDAC7 Missense_Mutation p.R586H 0.45 deleterious(0) probably_damaging(1) TCGA-BR-8372-01 12 48723395 48723395 G A H1FNT Silent p.T107T 0.28 TCGA-BR-8372-01 12 48866561 48866561 A G ANP32D Silent p.T38T 0.30 TCGA-BR-8372-01 12 49167856 49167856 C A ADCY6 Missense_Mutation p.R770L 0.29 tolerated(0.82) benign(0.003) TCGA-BR-8372-01 12 4919441 4919441 C - KCNA6 Frame_Shift_Del p.L80* 0.31 TCGA-BR-8372-01 12 49420206 49420206 C A KMT2D Silent p.G5181G 0.10 TCGA-BR-8372-01 12 49433773 49433773 G - KMT2D Frame_Shift_Del p.L2594Wfs*97 0.29 TCGA-BR-8372-01 12 51319087 51319087 C T METTL7A Missense_Mutation p.P89L 0.39 deleterious(0.02) probably_damaging(0.92) TCGA-BR-8372-01 12 52448961 52448961 A G NR4A1 Silent p.T296T 0.11 TCGA-BR-8372-01 12 52450285 52450285 A G NR4A1 Silent p.R351R 0.32 TCGA-BR-8372-01 12 53184633 53184633 G A KRT3 Missense_Mutation p.A520V 0.33 deleterious(0.04) unknown(0) TCGA-BR-8372-01 12 53459490 53459490 G - SPRYD3 3'UTR 0.34 TCGA-BR-8372-01 12 54333276 54333276 G A HOXC13 Missense_Mutation p.G196R 0.44 tolerated(0.14) possibly_damaging(0.782) TCGA-BR-8372-01 12 54686659 54686659 G T NFE2 Silent p.P207P 0.33 TCGA-BR-8372-01 12 55641513 55641513 A G OR6C74 Missense_Mutation p.M148V 0.28 tolerated_low_confidence(0.44) benign(0) TCGA-BR-8372-01 12 56333951 56333951 T C DGKA Silent p.I265I 0.38 TCGA-BR-8372-01 12 56386005 56386005 C T RAB5B 3'UTR 0.30 TCGA-BR-8372-01 12 56816646 56816646 C A TIMELESS Missense_Mutation p.G808V 0.38 deleterious(0) probably_damaging(0.982) TCGA-BR-8372-01 12 5708775 5708775 C T ANO2 Missense_Mutation p.R703Q 0.33 deleterious(0.01) benign(0.232) TCGA-BR-8372-01 12 57441564 57441564 A G MYO1A Intron 0.19 TCGA-BR-8372-01 12 57571256 57571256 G A LRP1 Missense_Mutation p.A1415T 0.06 possibly_damaging(0.745) TCGA-BR-8372-01 12 57627675 57627675 G A SHMT2 Missense_Mutation p.G423S 0.22 deleterious(0) probably_damaging(0.996) TCGA-BR-8372-01 12 58114785 58114785 C T OS9 3'UTR 0.35 TCGA-BR-8372-01 12 66517487 66517487 T G LLPH 3'UTR 0.19 TCGA-BR-8372-01 12 6670152 6670152 C T NOP2 Missense_Mutation p.R464Q 0.24 deleterious(0) probably_damaging(1) TCGA-BR-8372-01 12 6715477 6715477 A G CHD4 Silent p.D21D 0.17 TCGA-BR-8372-01 12 6777207 6777207 T C ZNF384 Silent p.A469A 0.31 TCGA-BR-8372-01 12 6943194 6943194 T C LEPREL2 Missense_Mutation p.V479A 0.08 tolerated(0.3) benign(0.003) TCGA-BR-8372-01 12 7045763 7045763 C T ATN1 Missense_Mutation p.P445S 0.12 benign(0.095) TCGA-BR-8372-01 12 7084290 7084290 G T EMG1 Missense_Mutation p.G150C 0.36 deleterious(0) TCGA-BR-8372-01 12 7343037 7343037 G A PEX5 Missense_Mutation p.G22R 0.34 deleterious(0.03) benign(0.005) TCGA-BR-8372-01 12 81732978 81732978 T C PPFIA2 Silent p.K843K 0.07 TCGA-BR-8372-01 12 85450034 85450035 - A LRRIQ1 Frame_Shift_Ins p.R491Tfs*14 0.53 TCGA-BR-8372-01 12 88380180 88380180 C T C12orf50 Silent p.Q277Q 0.44 TCGA-BR-8372-01 12 9251272 9251272 G T A2M Silent p.V594V 0.40 TCGA-BR-8372-01 12 94761653 94761653 T A CCDC41 Missense_Mutation p.Q420H 0.31 tolerated(0.29) probably_damaging(0.999) TCGA-BR-8372-01 12 99640299 99640299 G T ANKS1B Missense_Mutation p.D700E 0.43 tolerated_low_confidence(0.41) benign(0.001) TCGA-BR-8372-01 13 101735497 101735497 A - NALCN Frame_Shift_Del p.F1212Lfs*26 0.31 TCGA-BR-8372-01 13 101997731 101997732 - GT NALCN Frame_Shift_Ins p.C229Tfs*6 0.30 TCGA-BR-8372-01 13 110804758 110804758 G A COL4A1 Silent p.H1617H 0.33 TCGA-BR-8372-01 13 110833685 110833685 G A COL4A1 Missense_Mutation p.P716L 0.13 benign(0.002) TCGA-BR-8372-01 13 110857865 110857865 A G COL4A1 Silent p.G293G 0.35 TCGA-BR-8372-01 13 113736828 113736828 A G MCF2L Missense_Mutation p.M655V 0.27 deleterious(0) benign(0.328) TCGA-BR-8372-01 13 114292142 114292142 A G TFDP1 Missense_Mutation p.Q339R 0.22 tolerated(0.44) possibly_damaging(0.688) TCGA-BR-8372-01 13 115012445 115012445 G A CDC16 Missense_Mutation p.G313S 0.30 tolerated(0.07) possibly_damaging(0.579) TCGA-BR-8372-01 13 20244467 20244467 A G MPHOSPH8 Silent p.V807V 0.29 TCGA-BR-8372-01 13 21295832 21295832 C T IL17D Silent p.C116C 0.36 TCGA-BR-8372-01 13 21563349 21563349 G - LATS2 Frame_Shift_Del p.Y191Tfs*49 0.26 TCGA-BR-8372-01 13 21563416 21563416 G A LATS2 Missense_Mutation p.T168M 0.31 deleterious(0.03) possibly_damaging(0.542) TCGA-BR-8372-01 13 22245934 22245935 - TTC FGF9 5'UTR 0.36 TCGA-BR-8372-01 13 22246259 22246259 A G FGF9 Missense_Mutation p.T70A 0.28 tolerated(0.06) benign(0.009) TCGA-BR-8372-01 13 22275330 22275330 A - FGF9 Frame_Shift_Del p.K129Nfs*2 0.33 TCGA-BR-8372-01 13 23904309 23904309 A G SACS Missense_Mutation p.I4569T 0.27 probably_damaging(0.995) TCGA-BR-8372-01 13 25744572 25744572 A G AMER2 Missense_Mutation p.C396R 0.29 tolerated(0.06) benign(0.124) TCGA-BR-8372-01 13 25745359 25745359 G A AMER2 Silent p.G133G 0.33 TCGA-BR-8372-01 13 25745594 25745594 G T AMER2 Missense_Mutation p.A55D 0.39 deleterious(0) probably_damaging(0.996) TCGA-BR-8372-01 13 25745681 25745681 C T AMER2 Missense_Mutation p.C26Y 0.24 deleterious_low_confidence(0.01) probably_damaging(0.962) TCGA-BR-8372-01 13 28367833 28367833 G A GSX1 Silent p.A181A 0.11 TCGA-BR-8372-01 13 30104719 30104719 C T SLC7A1 Silent p.T220T 0.34 TCGA-BR-8372-01 13 36699971 36699971 G A DCLK1 Missense_Mutation p.P102S 0.30 deleterious(0.02) unknown(0) TCGA-BR-8372-01 13 37524043 37524043 T C ALG5 3'UTR 0.37 TCGA-BR-8372-01 13 37581201 37581201 A - EXOSC8 Frame_Shift_Del p.N162Mfs*9 0.34 TCGA-BR-8372-01 13 38357091 38357091 A G TRPC4 Splice_Site p.X126_splice 0.20 TCGA-BR-8372-01 13 39266588 39266589 - C FREM2 Frame_Shift_Ins p.Q1705Sfs*22 0.28 TCGA-BR-8372-01 13 41556143 41556143 A G ELF1 Silent p.S16S 0.08 TCGA-BR-8372-01 13 49084763 49084763 A G RCBTB2 Splice_Site p.X309_splice 0.36 TCGA-BR-8372-01 13 49771028 49771028 G A FNDC3A Missense_Mutation p.E748K 0.34 tolerated(0.11) benign(0.075) TCGA-BR-8372-01 13 51826207 51826207 A G FAM124A Missense_Mutation p.D271G 0.11 deleterious(0) probably_damaging(0.976) TCGA-BR-8372-01 13 61987108 61987108 T C PCDH20 Missense_Mutation p.E375G 0.32 tolerated(0.27) possibly_damaging(0.696) TCGA-BR-8372-01 13 64321091 64321091 G A AL445989.1 Missense_Mutation p.G53D 0.40 unknown(0) TCGA-BR-8372-01 13 67801071 67801071 T - PCDH9 Frame_Shift_Del p.N501Mfs*24 0.23 TCGA-BR-8372-01 13 76378615 76378615 T C LMO7 Silent p.H51H 0.27 TCGA-BR-8372-01 13 78492668 78492668 G A EDNRB Missense_Mutation p.A104V 0.24 deleterious_low_confidence(0.01) probably_damaging(0.926) TCGA-BR-8372-01 13 94197638 94197638 C T GPC6 Missense_Mutation p.R95C 0.33 deleterious(0) probably_damaging(0.93) TCGA-BR-8372-01 13 95235385 95235385 A G TGDS Missense_Mutation p.V140A 0.29 deleterious(0.04) benign(0.078) TCGA-BR-8372-01 13 96743228 96743228 G A HS6ST3 Missense_Mutation p.G38R 0.36 tolerated_low_confidence(0.16) unknown(0) TCGA-BR-8372-01 13 97485036 97485036 A C HS6ST3 Missense_Mutation p.N334H 0.34 deleterious(0.02) probably_damaging(0.972) TCGA-BR-8372-01 13 99907196 99907196 G A GPR18 Missense_Mutation p.R311C 0.34 deleterious(0) probably_damaging(0.992) TCGA-BR-8372-01 14 100615982 100615982 G A DEGS2 Silent p.L50L 0.40 TCGA-BR-8372-01 14 100759713 100759713 A G SLC25A29 Missense_Mutation p.V27A 0.16 deleterious(0) probably_damaging(0.967) TCGA-BR-8372-01 14 101193431 101193431 G A DLK1 Missense_Mutation p.R9H 0.29 tolerated(0.58) benign(0.002) TCGA-BR-8372-01 14 101520692 101520692 C G MIR382 RNA 0.32 TCGA-BR-8372-01 14 101521786 101521786 G A MIR485 RNA 0.27 TCGA-BR-8372-01 14 101521804 101521804 A G MIR485 RNA 0.35 TCGA-BR-8372-01 14 102027850 102027850 C T DIO3 Missense_Mutation p.T6M 0.40 deleterious_low_confidence(0.01) benign(0.129) TCGA-BR-8372-01 14 102027918 102027918 C T DIO3 Missense_Mutation p.R29C 0.18 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-BR-8372-01 14 102515817 102515817 C T DYNC1H1 Silent p.A4471A 0.27 TCGA-BR-8372-01 14 104139404 104139404 A G KLC1 Silent p.L347L 0.39 TCGA-BR-8372-01 14 105407107 105407107 G T AHNAK2 Missense_Mutation p.S4894Y 0.44 probably_damaging(0.93) TCGA-BR-8372-01 14 105410777 105410777 C T AHNAK2 Missense_Mutation p.D3671N 0.34 benign(0.003) TCGA-BR-8372-01 14 105415855 105415855 T C AHNAK2 Missense_Mutation p.D1978G 0.37 probably_damaging(0.997) TCGA-BR-8372-01 14 106208361 106208361 T C IGHG1 Missense_Mutation p.N180S 0.32 deleterious(0) probably_damaging(0.982) TCGA-BR-8372-01 14 106236165 106236165 C A IGHG3 Missense_Mutation p.V214L 0.30 tolerated(0.1) benign(0.02) TCGA-BR-8372-01 14 106320534 106320534 C T IGHM Missense_Mutation p.E426K 0.25 deleterious(0.01) probably_damaging(0.951) TCGA-BR-8372-01 14 106829604 106829604 T C IGHV4-34 Missense_Mutation p.Y120C 0.35 deleterious(0.01) probably_damaging(0.997) TCGA-BR-8372-01 14 19553817 19553817 A G POTEG Missense_Mutation p.H134R 0.08 tolerated(0.21) benign(0.01) TCGA-BR-8372-01 14 20612024 20612024 C T OR4N5 Missense_Mutation p.L44F 0.34 deleterious(0.04) benign(0.033) TCGA-BR-8372-01 14 21488109 21488109 C T NDRG2 Silent p.P194P 0.21 TCGA-BR-8372-01 14 21957487 21957487 T C TOX4 Silent p.N245N 0.29 TCGA-BR-8372-01 14 21957499 21957499 T C TOX4 Silent p.T249T 0.06 TCGA-BR-8372-01 14 21993380 21993380 G - SALL2 Frame_Shift_Del p.P161Lfs*12 0.24 TCGA-BR-8372-01 14 22636837 22636837 C - TRAV30 Frame_Shift_Del p.T97Rfs*? 0.31 TCGA-BR-8372-01 14 23468135 23468135 G - C14orf93 Frame_Shift_Del p.T33Kfs*16 0.32 TCGA-BR-8372-01 14 24586179 24586179 A G DCAF11 Missense_Mutation p.Q70R 0.40 tolerated(0.07) benign(0.424) TCGA-BR-8372-01 14 24631403 24631403 T C IRF9 Missense_Mutation p.V17A 0.27 deleterious(0) possibly_damaging(0.876) TCGA-BR-8372-01 14 24648032 24648032 G A REC8 Silent p.Q370Q 0.37 TCGA-BR-8372-01 14 24771314 24771314 T C NOP9 Splice_Site p.X317_splice 0.30 TCGA-BR-8372-01 14 24897157 24897157 T C CBLN3 Silent p.S152S 0.18 TCGA-BR-8372-01 14 24905387 24905387 T C KHNYN Splice_Site p.X562_splice 0.33 TCGA-BR-8372-01 14 31398422 31398423 - C STRN3 Frame_Shift_Ins p.K362Efs*18 0.29 TCGA-BR-8372-01 14 38296474 38296474 T C TTC6 Missense_Mutation p.M1734T 0.09 deleterious(0) probably_damaging(0.99) TCGA-BR-8372-01 14 39556131 39556131 A G SEC23A Splice_Site p.X228_splice 0.29 TCGA-BR-8372-01 14 42356881 42356881 T A LRFN5 Missense_Mutation p.D351E 0.37 deleterious(0.03) possibly_damaging(0.861) TCGA-BR-8372-01 14 45697006 45697006 T C MIS18BP1 Missense_Mutation p.N536D 0.24 tolerated(0.31) benign(0.173) TCGA-BR-8372-01 14 45700418 45700418 T - MIS18BP1 Frame_Shift_Del p.N507Mfs*27 0.33 TCGA-BR-8372-01 14 50269385 50269385 A G NEMF Splice_Site p.X658_splice 0.24 TCGA-BR-8372-01 14 50606709 50606709 T - SOS2 Frame_Shift_Del p.K912Nfs*3 0.32 TCGA-BR-8372-01 14 52735271 52735271 C T PTGDR Missense_Mutation p.R247C 0.33 tolerated(0.05) benign(0.436) TCGA-BR-8372-01 14 57741070 57741070 A G AP5M1 Silent p.L61L 0.28 TCGA-BR-8372-01 14 58598352 58598353 - C C14orf37 Frame_Shift_Ins p.E570Gfs*16 0.20 TCGA-BR-8372-01 14 60581848 60581848 T C PCNXL4 Silent p.D108D 0.40 TCGA-BR-8372-01 14 61518547 61518547 T C SLC38A6 Missense_Mutation p.F365L 0.35 deleterious(0.01) benign(0.259) TCGA-BR-8372-01 14 63757612 63757612 A G RHOJ Missense_Mutation p.Y172C 0.11 deleterious(0) probably_damaging(1) TCGA-BR-8372-01 14 64491108 64491108 T A SYNE2 Nonsense_Mutation p.L1924* 0.35 TCGA-BR-8372-01 14 65260496 65260496 G A SPTB Missense_Mutation p.R629W 0.27 deleterious(0) probably_damaging(1) TCGA-BR-8372-01 14 65262178 65262178 C T SPTB Silent p.L507L 0.31 TCGA-BR-8372-01 14 72128176 72128176 C A SIPA1L1 Silent p.V749V 0.48 TCGA-BR-8372-01 14 74206606 74206606 G - ELMSAN1 Frame_Shift_Del p.Q36Sfs*6 0.30 TCGA-BR-8372-01 14 74206625 74206625 G T ELMSAN1 Silent p.P29P 0.14 TCGA-BR-8372-01 14 75388063 75388063 A G RPS6KL1 Missense_Mutation p.L61P 0.18 deleterious(0) probably_damaging(1) TCGA-BR-8372-01 14 76238159 76238159 T C TTLL5 Missense_Mutation p.F700L 0.26 tolerated(0.68) benign(0.001) TCGA-BR-8372-01 14 77572054 77572054 G A CIPC Translation_Start_Site p.M1? 0.34 deleterious_low_confidence(0.02) probably_damaging(0.961) TCGA-BR-8372-01 14 77844056 77844056 A G SAMD15 Missense_Mutation p.T99A 0.19 tolerated(0.1) benign(0.149) TCGA-BR-8372-01 14 77844361 77844361 A G SAMD15 Silent p.Q200Q 0.23 TCGA-BR-8372-01 14 79434538 79434538 G A NRXN3 Silent p.L624L 0.08 TCGA-BR-8372-01 14 88652430 88652430 G A KCNK10 Nonsense_Mutation p.R361* 0.29 TCGA-BR-8372-01 14 88934376 88934376 C T PTPN21 3'UTR 0.37 TCGA-BR-8372-01 14 89338723 89338724 - CAA TTC8 In_Frame_Ins p.N429dup 0.20 TCGA-BR-8372-01 14 90450954 90450954 T C TDP1 Silent p.L327L 0.38 TCGA-BR-8372-01 14 92126195 92126195 T C CATSPERB Missense_Mutation p.Y473C 0.30 deleterious(0) probably_damaging(0.923) TCGA-BR-8372-01 14 93709220 93709221 - T BTBD7 Frame_Shift_Ins p.T933Nfs*15 0.24 TCGA-BR-8372-01 14 94063774 94063774 A G UNC79 Missense_Mutation p.Y910C 0.19 tolerated(0.1) probably_damaging(0.999) TCGA-BR-8372-01 14 94088050 94088050 A - UNC79 Frame_Shift_Del p.K1316Sfs*12 0.31 TCGA-BR-8372-01 14 94395625 94395625 C T FAM181A 3'UTR 0.31 TCGA-BR-8372-01 14 96794867 96794867 A G ATG2B Silent p.N660N 0.13 TCGA-BR-8372-01 15 101041961 101041961 C T CERS3 Missense_Mutation p.V32I 0.33 tolerated(0.16) benign(0.026) TCGA-BR-8372-01 15 20645813 20645813 T C HERC2P3 RNA 0.12 TCGA-BR-8372-01 15 23891069 23891069 C A MAGEL2 Missense_Mutation p.Q4H 0.36 deleterious_low_confidence(0) possibly_damaging(0.819) TCGA-BR-8372-01 15 24923624 24923624 A G NPAP1 Silent p.Q870Q 0.34 TCGA-BR-8372-01 15 25490509 25490509 C - SNORD115-40 3'Flank 0.19 TCGA-BR-8372-01 15 26806130 26806130 T C GABRB3 Silent p.A343A 0.36 TCGA-BR-8372-01 15 28356906 28356906 A G HERC2 3'UTR 0.32 TCGA-BR-8372-01 15 28408274 28408274 G A HERC2 Missense_Mutation p.A3571V 0.35 benign(0.043) TCGA-BR-8372-01 15 28460840 28460840 G A HERC2 Missense_Mutation p.P2046L 0.26 benign(0.023) TCGA-BR-8372-01 15 29368282 29368282 A G APBA2 Missense_Mutation p.S353G 0.32 deleterious(0.03) benign(0.001) TCGA-BR-8372-01 15 29385292 29385292 G A APBA2 Missense_Mutation p.E362K 0.28 deleterious(0.01) benign(0.222) TCGA-BR-8372-01 15 30919028 30919028 G A ARHGAP11B Nonsense_Mutation p.W2* 0.35 TCGA-BR-8372-01 15 35274313 35274313 T C ZNF770 Silent p.S441S 0.05 TCGA-BR-8372-01 15 41245679 41245679 A T CHAC1 Silent p.L8L 0.44 TCGA-BR-8372-01 15 41762573 41762573 G A RTF1 Silent p.S336S 0.35 TCGA-BR-8372-01 15 43621352 43621352 C - LCMT2 Frame_Shift_Del p.V446Ffs*17 0.22 TCGA-BR-8372-01 15 43672327 43672327 G - TUBGCP4 Frame_Shift_Del p.L165Cfs*66 0.29 TCGA-BR-8372-01 15 43678008 43678008 A G TUBGCP4 Missense_Mutation p.N248S 0.42 tolerated(0.5) benign(0.113) TCGA-BR-8372-01 15 43821953 43821953 G A MAP1A Missense_Mutation p.R2714Q 0.35 probably_damaging(0.996) TCGA-BR-8372-01 15 44048950 44048950 G T PDIA3 Missense_Mutation p.G117V 0.41 deleterious(0) probably_damaging(0.984) TCGA-BR-8372-01 15 44066518 44066518 T C ELL3 Silent p.Q300Q 0.41 TCGA-BR-8372-01 15 48441449 48441449 C T MYEF2 Missense_Mutation p.D500N 0.08 deleterious(0.05) possibly_damaging(0.461) TCGA-BR-8372-01 15 48533725 48533725 C A SLC12A1 Missense_Mutation p.A410D 0.25 deleterious(0.01) possibly_damaging(0.845) TCGA-BR-8372-01 15 49329874 49329874 A G SECISBP2L Silent p.N39N 0.23 TCGA-BR-8372-01 15 50884706 50884706 C T TRPM7 Silent p.T1242T 0.35 TCGA-BR-8372-01 15 51242094 51242094 A G AP4E1 Missense_Mutation p.H463R 0.29 tolerated(0.18) possibly_damaging(0.71) TCGA-BR-8372-01 15 52643603 52643603 T C MYO5A Missense_Mutation p.S1233G 0.28 tolerated(0.22) benign(0) TCGA-BR-8372-01 15 52688528 52688528 C T MYO5A Silent p.Q462Q 0.27 TCGA-BR-8372-01 15 54307979 54307979 T C UNC13C Missense_Mutation p.V960A 0.22 tolerated_low_confidence(0.33) benign(0.001) TCGA-BR-8372-01 15 63970298 63970300 CTC - HERC1 In_Frame_Del p.E2272del 0.28 TCGA-BR-8372-01 15 64056318 64056318 C T HERC1 Missense_Mutation p.A335T 0.31 possibly_damaging(0.884) TCGA-BR-8372-01 15 65968867 65968867 A C DENND4A Missense_Mutation p.S1428A 0.35 tolerated(0.35) benign(0.066) TCGA-BR-8372-01 15 72040765 72040765 G T THSD4 Silent p.S749S 0.32 TCGA-BR-8372-01 15 74472335 74472335 C A STRA6 3'UTR 0.38 TCGA-BR-8372-01 15 74914516 74914516 G A CLK3 Missense_Mutation p.G290D 0.09 deleterious(0) probably_damaging(0.994) TCGA-BR-8372-01 15 75047347 75047347 A G CYP1A2 Missense_Mutation p.D490G 0.09 deleterious(0.01) probably_damaging(1) TCGA-BR-8372-01 15 75632127 75632127 A G COMMD4 Missense_Mutation p.H156R 0.24 tolerated(0.24) benign(0.005) TCGA-BR-8372-01 15 75651720 75651720 G - MAN2C1 Frame_Shift_Del p.H670Tfs*35 0.26 TCGA-BR-8372-01 15 78633418 78633418 C T CRABP1 Missense_Mutation p.A35V 0.55 tolerated(0.18) benign(0.024) TCGA-BR-8372-01 15 78757619 78757619 C T IREB2 Missense_Mutation p.A100V 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8372-01 15 78909418 78909418 T C CHRNA3 Missense_Mutation p.M109V 0.39 tolerated(0.15) benign(0.009) TCGA-BR-8372-01 15 79296391 79296391 T C RASGRF1 Silent p.S750S 0.09 TCGA-BR-8372-01 15 80806735 80806735 G T ARNT2 Missense_Mutation p.W289L 0.36 deleterious(0) benign(0.307) TCGA-BR-8372-01 15 81235401 81235401 T C KIAA1199 Missense_Mutation p.I1272T 0.20 tolerated(0.09) possibly_damaging(0.493) TCGA-BR-8372-01 15 81598480 81598480 G A IL16 Missense_Mutation p.A1218T 0.36 tolerated(0.63) benign(0.001) TCGA-BR-8372-01 15 82336953 82336953 A G MEX3B Silent p.G86G 0.37 TCGA-BR-8372-01 15 82444259 82444259 A G EFTUD1 Missense_Mutation p.S846P 0.11 tolerated(0.06) benign(0.043) TCGA-BR-8372-01 15 83657726 83657727 - T C15orf40 3'Flank 0.29 TCGA-BR-8372-01 15 84442355 84442355 C A ADAMTSL3 Silent p.T90T 0.39 TCGA-BR-8372-01 15 84651224 84651224 G A ADAMTSL3 Silent p.K948K 0.36 TCGA-BR-8372-01 15 85341570 85341570 A C ZNF592 Missense_Mutation p.E867D 0.31 tolerated(0.24) probably_damaging(0.995) TCGA-BR-8372-01 15 89760476 89760476 G A RLBP1 Missense_Mutation p.A74V 0.33 tolerated(0.45) benign(0.138) TCGA-BR-8372-01 15 90274711 90274711 A C WDR93 Silent p.A416A 0.05 TCGA-BR-8372-01 15 90785027 90785027 C T GDPGP1 Missense_Mutation p.P296L 0.33 tolerated(0.06) benign(0.133) TCGA-BR-8372-01 15 91422045 91422045 C T FURIN Missense_Mutation p.R298W 0.16 deleterious(0.03) probably_damaging(0.989) TCGA-BR-8372-01 15 91542927 91542927 C T VPS33B Missense_Mutation p.R585Q 0.37 tolerated(0.07) probably_damaging(0.999) TCGA-BR-8372-01 15 92669421 92669421 C T SLCO3A1 Silent p.Y435Y 0.28 TCGA-BR-8372-01 15 92706441 92706441 A - SLCO3A1 3'UTR 0.26 TCGA-BR-8372-01 16 11000482 11000482 T C CIITA Missense_Mutation p.L378P 0.16 tolerated(0.05) possibly_damaging(0.52) TCGA-BR-8372-01 16 133169 133169 G A MPG Missense_Mutation p.R145H 0.32 deleterious(0) probably_damaging(0.965) TCGA-BR-8372-01 16 1396000 1396000 C T BAIAP3 Missense_Mutation p.A776V 0.35 tolerated(0.08) benign(0.042) TCGA-BR-8372-01 16 1536186 1536186 G - PTX4 Frame_Shift_Del p.G393Efs*57 0.18 TCGA-BR-8372-01 16 16235124 16235124 G A ABCC1 Missense_Mutation p.A1528T 0.35 deleterious(0) possibly_damaging(0.504) TCGA-BR-8372-01 16 1630815 1630815 T C IFT140 Missense_Mutation p.H490R 0.34 deleterious(0) benign(0.078) TCGA-BR-8372-01 16 19451796 19451797 TA - TMC5 Frame_Shift_Del p.Y146Cfs*25 0.17 TCGA-BR-8372-01 16 19452109 19452109 A G TMC5 Missense_Mutation p.H250R 0.38 tolerated(0.19) benign(0.002) TCGA-BR-8372-01 16 2144016 2144016 T C PKD1 Splice_Site p.X3540_splice 0.60 TCGA-BR-8372-01 16 2160630 2160630 A C PKD1 Missense_Mutation p.V1513G 0.08 possibly_damaging(0.904) TCGA-BR-8372-01 16 2233851 2233851 A G CASKIN1 Missense_Mutation p.I503T 0.20 probably_damaging(0.981) TCGA-BR-8372-01 16 23541078 23541078 A G EARS2 Missense_Mutation p.L403P 0.27 deleterious(0.01) probably_damaging(0.926) TCGA-BR-8372-01 16 24801521 24801521 A G TNRC6A Missense_Mutation p.T520A 0.30 tolerated(0.14) benign(0.174) TCGA-BR-8372-01 16 24806029 24806029 A G TNRC6A Missense_Mutation p.M1173V 0.33 tolerated(0.57) benign(0.253) TCGA-BR-8372-01 16 27476654 27476654 T G GTF3C1 Missense_Mutation p.E1761A 0.16 tolerated(0.08) benign(0.006) TCGA-BR-8372-01 16 27497449 27497449 T C GTF3C1 Missense_Mutation p.R1243G 0.31 deleterious(0) benign(0.169) TCGA-BR-8372-01 16 28167613 28167613 G A XPO6 Silent p.N293N 0.34 TCGA-BR-8372-01 16 28596283 28596283 A G CCDC101 Missense_Mutation p.H42R 0.07 deleterious(0.03) benign(0.027) TCGA-BR-8372-01 16 28604641 28604641 C T SULT1A2 Missense_Mutation p.V176M 0.36 deleterious(0) possibly_damaging(0.541) TCGA-BR-8372-01 16 28845454 28845454 G T ATXN2L Silent p.L698L 0.33 TCGA-BR-8372-01 16 28847350 28847350 G - ATXN2L Frame_Shift_Del p.Q1002Kfs*95 0.24 TCGA-BR-8372-01 16 28931233 28931233 G A RABEP2 Silent p.T102T 0.38 TCGA-BR-8372-01 16 28970321 28970321 T C NFATC2IP Missense_Mutation p.V334A 0.21 deleterious(0) probably_damaging(0.997) TCGA-BR-8372-01 16 29367202 29367202 G - SNX29P2 RNA 0.33 TCGA-BR-8372-01 16 29989427 29989427 T C TAOK2 Silent p.N50N 0.08 TCGA-BR-8372-01 16 30002182 30002182 C T TAOK2 3'Flank 0.34 TCGA-BR-8372-01 16 30793629 30793629 G A ZNF629 Missense_Mutation p.R674C 0.38 tolerated(0.14) benign(0.018) TCGA-BR-8372-01 16 30899188 30899188 A G BCL7C Nonstop_Mutation p.*218Rext*? 0.38 TCGA-BR-8372-01 16 30992103 30992103 G A SETD1A Missense_Mutation p.R1542Q 0.34 unknown(0) TCGA-BR-8372-01 16 3254280 3254280 T C OR1F1 Missense_Mutation p.F12L 0.26 deleterious(0) possibly_damaging(0.452) TCGA-BR-8372-01 16 3739122 3739122 A G TRAP1 Silent p.H88H 0.29 TCGA-BR-8372-01 16 3781199 3781199 C T CREBBP Silent p.V1722V 0.31 TCGA-BR-8372-01 16 4165236 4165236 C T ADCY9 Missense_Mutation p.G70R 0.64 tolerated_low_confidence(0.31) benign(0.011) TCGA-BR-8372-01 16 4415045 4415045 T C CORO7 Missense_Mutation p.Y286C 0.27 tolerated(0.16) benign(0.03) TCGA-BR-8372-01 16 4516244 4516244 T C NMRAL1 Missense_Mutation p.M147V 0.38 tolerated(0.5) possibly_damaging(0.645) TCGA-BR-8372-01 16 47630429 47630429 C T PHKB Silent p.I450I 0.29 TCGA-BR-8372-01 16 4794910 4794910 A G C16orf71 Missense_Mutation p.Q314R 0.32 tolerated(0.36) probably_damaging(0.954) TCGA-BR-8372-01 16 48396436 48396436 T G SIAH1 Intron 0.47 TCGA-BR-8372-01 16 4934705 4934705 C A PPL Missense_Mutation p.E1317D 0.40 tolerated(0.34) benign(0.008) TCGA-BR-8372-01 16 56660930 56660930 A G MT1E 3'UTR 0.31 TCGA-BR-8372-01 16 57732056 57732056 G A CCDC135 Silent p.A65A 0.12 TCGA-BR-8372-01 16 57829017 57829017 T C KIFC3 Missense_Mutation p.D70G 0.11 tolerated_low_confidence(0.08) possibly_damaging(0.877) TCGA-BR-8372-01 16 57938728 57938728 C - CNGB1 Frame_Shift_Del p.L849Cfs*15 0.23 TCGA-BR-8372-01 16 58043956 58043956 G A USB1 Missense_Mutation p.R130H 0.44 deleterious(0.01) probably_damaging(0.993) TCGA-BR-8372-01 16 58202515 58202515 T - CSNK2A2 Frame_Shift_Del p.K171Sfs*4 0.35 TCGA-BR-8372-01 16 58585059 58585059 A C CNOT1 Missense_Mutation p.S1107A 0.35 deleterious(0) possibly_damaging(0.638) TCGA-BR-8372-01 16 61747819 61747819 T - CDH8 Frame_Shift_Del p.N527Tfs*51 0.18 TCGA-BR-8372-01 16 65345452 65345452 T C LINC00922 Splice_Site 0.26 TCGA-BR-8372-01 16 66956070 66956070 T C RRAD Missense_Mutation p.K279R 0.33 tolerated(1) benign(0.016) TCGA-BR-8372-01 16 67645338 67645339 - A CTCF Frame_Shift_Ins p.T204Nfs*26 0.22 TCGA-BR-8372-01 16 67709180 67709180 T C GFOD2 Missense_Mutation p.S346G 0.13 deleterious(0.02) benign(0.101) TCGA-BR-8372-01 16 67862076 67862076 T A CENPT 3'UTR 0.27 TCGA-BR-8372-01 16 67915891 67915891 G A EDC4 Silent p.Q1013Q 0.13 TCGA-BR-8372-01 16 69368633 69368633 C T RP11-343C2.12 Missense_Mutation p.A48T 0.34 tolerated(0.47) benign(0.034) TCGA-BR-8372-01 16 69373625 69373625 A G NIP7 5'UTR 0.33 TCGA-BR-8372-01 16 70163019 70163020 - A PDPR Frame_Shift_Ins p.N202Kfs*7 0.15 TCGA-BR-8372-01 16 70291987 70291987 T C AARS Missense_Mutation p.D709G 0.22 deleterious(0) possibly_damaging(0.874) TCGA-BR-8372-01 16 70548291 70548291 C T COG4 Missense_Mutation p.R164H 0.33 deleterious(0) probably_damaging(0.972) TCGA-BR-8372-01 16 70698190 70698190 G A MTSS1L Missense_Mutation p.A545V 0.46 tolerated(0.17) possibly_damaging(0.823) TCGA-BR-8372-01 16 70902576 70902576 T C HYDIN Missense_Mutation p.Q3736R 0.29 benign(0.021) TCGA-BR-8372-01 16 70995939 70995939 T C HYDIN Missense_Mutation p.H1964R 0.11 benign(0.025) TCGA-BR-8372-01 16 71101153 71101154 - G HYDIN Intron 0.32 TCGA-BR-8372-01 16 74908071 74908071 C A WDR59 3'UTR 0.24 TCGA-BR-8372-01 16 75446576 75446576 T C CFDP1 Missense_Mutation p.S87G 0.29 tolerated(0.52) benign(0.003) TCGA-BR-8372-01 16 75513137 75513137 A G CHST6 Missense_Mutation p.I197T 0.21 deleterious(0) possibly_damaging(0.864) TCGA-BR-8372-01 16 75563650 75563650 G A CHST5 Silent p.S211S 0.20 TCGA-BR-8372-01 16 75564048 75564048 C A CHST5 Missense_Mutation p.G79C 0.18 deleterious(0) probably_damaging(1) TCGA-BR-8372-01 16 77227598 77227598 G A MON1B Silent p.S133S 0.33 TCGA-BR-8372-01 16 77328873 77328874 - T ADAMTS18 Frame_Shift_Ins p.A985Sfs*31 0.31 TCGA-BR-8372-01 16 80718697 80718697 T - CDYL2 Frame_Shift_Del p.Y120Ifs*27 0.31 TCGA-BR-8372-01 16 81181847 81181847 C T PKD1L2 RNA 0.46 TCGA-BR-8372-01 16 81388112 81388112 A G GAN Missense_Mutation p.I129V 0.36 deleterious(0) probably_damaging(0.934) TCGA-BR-8372-01 16 82182417 82182417 G A MPHOSPH6 Silent p.D134D 0.30 TCGA-BR-8372-01 16 830291 830291 C - MSLNL Frame_Shift_Del p.G237Afs*109 0.21 TCGA-BR-8372-01 16 84125452 84125452 A G MBTPS1 Missense_Mutation p.V283A 0.28 deleterious(0) probably_damaging(0.992) TCGA-BR-8372-01 16 84224937 84224937 C T ADAD2 Missense_Mutation p.P34L 0.32 deleterious_low_confidence(0) probably_damaging(0.959) TCGA-BR-8372-01 16 84695477 84695477 C T KLHL36 Missense_Mutation p.A530V 0.33 deleterious(0.02) possibly_damaging(0.877) TCGA-BR-8372-01 16 86544482 86544482 A G FOXF1 Missense_Mutation p.N103D 0.42 deleterious(0) probably_damaging(0.995) TCGA-BR-8372-01 16 87744970 87744970 C T KLHDC4 Silent p.P305P 0.27 TCGA-BR-8372-01 16 88713177 88713177 G A CYBA Silent p.A91A 0.33 TCGA-BR-8372-01 16 88779164 88779164 G A CTU2 Silent p.P196P 0.27 TCGA-BR-8372-01 16 89169058 89169058 T C ACSF3 Missense_Mutation p.I238T 0.36 deleterious(0) probably_damaging(0.968) TCGA-BR-8372-01 16 89293297 89293297 G A ZNF778 Missense_Mutation p.G173S 0.34 tolerated(0.74) benign(0.024) TCGA-BR-8372-01 16 89590439 89590439 C T SPG7 Silent p.D134D 0.30 TCGA-BR-8372-01 16 89758245 89758245 G A CDK10 Missense_Mutation p.D123N 0.40 deleterious(0) probably_damaging(0.999) TCGA-BR-8372-01 16 89871719 89871719 C A FANCA Missense_Mutation p.Q226H 0.32 tolerated(0.12) benign(0.216) TCGA-BR-8372-01 17 10426662 10426662 C T MYH2 Missense_Mutation p.R1847H 0.28 tolerated(0.08) possibly_damaging(0.539) TCGA-BR-8372-01 17 10535191 10535191 C T MYH3 Missense_Mutation p.R1700Q 0.17 deleterious(0) probably_damaging(0.988) TCGA-BR-8372-01 17 1401243 1401243 G A INPP5K Missense_Mutation p.T317M 0.25 deleterious(0.02) probably_damaging(0.992) TCGA-BR-8372-01 17 1417245 1417245 A G INPP5K Missense_Mutation p.S25P 0.32 deleterious(0) probably_damaging(0.998) TCGA-BR-8372-01 17 14683361 14683361 A G AC005863.1 RNA 0.23 TCGA-BR-8372-01 17 1631709 1631709 C T WDR81 Silent p.S1152S 0.42 TCGA-BR-8372-01 17 1690197 1690197 G A SMYD4 Silent p.C597C 0.35 TCGA-BR-8372-01 17 17057685 17057685 C A MPRIP Silent p.T477T 0.18 TCGA-BR-8372-01 17 17700156 17700156 C T RAI1 Silent p.P1298P 0.36 TCGA-BR-8372-01 17 17720439 17720439 A G SREBF1 Missense_Mutation p.W570R 0.22 deleterious(0.02) probably_damaging(0.944) TCGA-BR-8372-01 17 17997175 17997175 G T DRG2 Missense_Mutation p.R38L 0.38 deleterious(0) probably_damaging(0.999) TCGA-BR-8372-01 17 18071031 18071031 C T MYO15A Missense_Mutation p.P3359L 0.33 unknown(0) TCGA-BR-8372-01 17 18423000 18423000 G T FAM106A 3'Flank 0.23 TCGA-BR-8372-01 17 18874698 18874698 C A FAM83G Missense_Mutation p.A816S 0.28 tolerated_low_confidence(0.11) benign(0.257) TCGA-BR-8372-01 17 18918512 18918512 G A SLC5A10 Missense_Mutation p.R430Q 0.61 deleterious(0) probably_damaging(0.912) TCGA-BR-8372-01 17 19618513 19618513 C T SLC47A2 Silent p.L47L 0.09 TCGA-BR-8372-01 17 19641649 19641649 G - ALDH3A1 Frame_Shift_Del p.P445Rfs*6 0.23 TCGA-BR-8372-01 17 20354887 20354887 A G LGALS9B Silent p.A276A 0.31 TCGA-BR-8372-01 17 21215533 21215533 C T MAP2K3 Missense_Mutation p.P285L 0.22 deleterious(0.04) benign(0.262) TCGA-BR-8372-01 17 2226566 2226566 T C SRR Missense_Mutation p.I244T 0.33 deleterious(0.04) possibly_damaging(0.848) TCGA-BR-8372-01 17 2570398 2570398 A G PAFAH1B1 Missense_Mutation p.Y102C 0.21 deleterious(0.02) benign(0.091) TCGA-BR-8372-01 17 26518101 26518101 C T NLK Nonsense_Mutation p.R431* 0.29 TCGA-BR-8372-01 17 27009838 27009838 C T SUPT6H Missense_Mutation p.A564V 0.38 tolerated(0.42) benign(0.034) TCGA-BR-8372-01 17 27239418 27239418 G A PHF12 Intron 0.22 TCGA-BR-8372-01 17 27957929 27957929 T C SSH2 Missense_Mutation p.H1401R 0.32 tolerated(0.1) benign(0.071) TCGA-BR-8372-01 17 29221133 29221133 T C ATAD5 Silent p.N1754N 0.17 TCGA-BR-8372-01 17 3518749 3518749 G T SHPK Silent p.A302A 0.27 TCGA-BR-8372-01 17 35348137 35348137 A T AATF Missense_Mutation p.D460V 0.28 deleterious(0) probably_damaging(1) TCGA-BR-8372-01 17 36483237 36483237 T C GPR179 Missense_Mutation p.E2072G 0.30 deleterious(0.03) benign(0.022) TCGA-BR-8372-01 17 36955684 36955689 GGCGGC - PIP4K2B 5'UTR 0.33 TCGA-BR-8372-01 17 3721788 3721790 TCT - C17orf85 In_Frame_Del p.E359del 0.30 TCGA-BR-8372-01 17 37762190 37762190 G T NEUROD2 Silent p.A221A 0.38 TCGA-BR-8372-01 17 38251794 38251794 T C NR1D1 Missense_Mutation p.N384S 0.33 tolerated(0.57) benign(0.082) TCGA-BR-8372-01 17 38252042 38252042 G T NR1D1 Silent p.T301T 0.33 TCGA-BR-8372-01 17 38320386 38320386 C T CASC3 Nonsense_Mutation p.Q480* 0.30 TCGA-BR-8372-01 17 38499007 38499007 G T RARA Intron 0.40 TCGA-BR-8372-01 17 38634836 38634836 G A TNS4 Missense_Mutation p.R659W 0.41 deleterious(0) probably_damaging(1) TCGA-BR-8372-01 17 39092635 39092635 G A KRT23 Missense_Mutation p.A74V 0.22 tolerated(0.63) benign(0.01) TCGA-BR-8372-01 17 39183218 39183218 T G KRTAP1-5 Missense_Mutation p.S64R 0.31 tolerated(0.07) unknown(0) TCGA-BR-8372-01 17 39780474 39780474 G T KRT17 Silent p.A96A 0.31 TCGA-BR-8372-01 17 39967232 39967232 T C LEPREL4 Missense_Mutation p.T224A 0.35 tolerated(0.74) benign(0.002) TCGA-BR-8372-01 17 40039404 40039404 C T ACLY Missense_Mutation p.G746R 0.28 deleterious(0) probably_damaging(1) TCGA-BR-8372-01 17 4077240 4077240 C T ANKFY1 Missense_Mutation p.V1005M 0.29 deleterious(0.02) possibly_damaging(0.891) TCGA-BR-8372-01 17 40879701 40879701 T C EZH1 Silent p.Q66Q 0.29 TCGA-BR-8372-01 17 41168515 41168515 G A VAT1 Missense_Mutation p.R303W 0.27 deleterious(0) probably_damaging(0.996) TCGA-BR-8372-01 17 43348437 43348437 C T MAP3K14-AS1 3'Flank 0.29 TCGA-BR-8372-01 17 43474075 43474075 C A ARHGAP27 Missense_Mutation p.R337L 0.40 deleterious(0.01) possibly_damaging(0.587) TCGA-BR-8372-01 17 43922517 43922517 G A SPPL2C Missense_Mutation p.R82H 0.44 tolerated(0.09) benign(0.354) TCGA-BR-8372-01 17 44109601 44109601 G - KANSL1 Frame_Shift_Del p.Q968Sfs*46 0.26 TCGA-BR-8372-01 17 46655263 46655263 A G HOXB4 Missense_Mutation p.V140A 0.28 deleterious(0.03) benign(0.437) TCGA-BR-8372-01 17 4689578 4689578 C T VMO1 Missense_Mutation p.A24T 0.17 tolerated(0.57) benign(0.038) TCGA-BR-8372-01 17 47126785 47126785 G - IGF2BP1 Frame_Shift_Del p.A572Pfs*53 0.28 TCGA-BR-8372-01 17 47301559 47301559 C T PHOSPHO1 3'UTR 0.33 TCGA-BR-8372-01 17 4804134 4804134 C T CHRNE Missense_Mutation p.A291T 0.31 deleterious(0) probably_damaging(0.999) TCGA-BR-8372-01 17 48263173 48263173 C T COL1A1 Missense_Mutation p.R1405H 0.26 unknown(0) TCGA-BR-8372-01 17 4837372 4837373 - A GP1BA Frame_Shift_Ins p.T494Nfs*4 0.38 TCGA-BR-8372-01 17 4860186 4860186 T A ENO3 Splice_Site p.X412_splice 0.28 TCGA-BR-8372-01 17 5238641 5238641 T C RABEP1 Splice_Site p.X176_splice 0.34 TCGA-BR-8372-01 17 52990096 52990097 AA - TOM1L1 Frame_Shift_Del p.K98Rfs*5 0.19 TCGA-BR-8372-01 17 534828 534828 C A VPS53 Missense_Mutation p.A217S 0.19 tolerated(0.28) benign(0.087) TCGA-BR-8372-01 17 54925289 54925289 G T DGKE Missense_Mutation p.D251Y 0.30 deleterious(0) probably_damaging(0.995) TCGA-BR-8372-01 17 55075765 55075765 C T SCPEP1 Silent p.H300H 0.36 TCGA-BR-8372-01 17 56285882 56285882 G A MKS1 Silent p.L363L 0.24 TCGA-BR-8372-01 17 56423650 56423650 C T SUPT4H1 Missense_Mutation p.R104Q 0.34 tolerated(0.06) benign(0.008) TCGA-BR-8372-01 17 56435161 56435161 C - RNF43 Frame_Shift_Del p.G659Vfs*41 0.45 TCGA-BR-8372-01 17 57763113 57763115 ATC - CLTC In_Frame_Del p.I1591del 0.24 TCGA-BR-8372-01 17 57915729 57915731 CAC - VMP1 In_Frame_Del p.H351del 0.16 TCGA-BR-8372-01 17 60685462 60685462 A G TLK2 Missense_Mutation p.T678A 0.17 tolerated(0.1) benign(0.059) TCGA-BR-8372-01 17 60837243 60837243 A G MARCH10 Missense_Mutation p.M112T 0.33 tolerated(0.22) benign(0.027) TCGA-BR-8372-01 17 61498806 61498806 C T TANC2 Silent p.D1821D 0.35 TCGA-BR-8372-01 17 61759260 61759260 G A MAP3K3 Splice_Site p.X243_splice 0.33 TCGA-BR-8372-01 17 62796801 62796801 A G PLEKHM1P RNA 0.30 TCGA-BR-8372-01 17 62893280 62893280 T C LRRC37A3 Silent p.L32L 0.08 TCGA-BR-8372-01 17 6377844 6377844 C T PITPNM3 Missense_Mutation p.R389H 0.43 deleterious(0.03) benign(0.009) TCGA-BR-8372-01 17 65014359 65014359 A G CACNG4 Missense_Mutation p.Y92C 0.24 deleterious(0) probably_damaging(0.995) TCGA-BR-8372-01 17 66981227 66981227 G C ABCA9 Silent p.P1417P 0.22 TCGA-BR-8372-01 17 66981232 66981232 C A ABCA9 Missense_Mutation p.A1416S 0.23 tolerated(0.41) benign(0.009) TCGA-BR-8372-01 17 7144115 7144115 G - GABARAP 3'UTR 0.27 TCGA-BR-8372-01 17 7229602 7229602 T C NEURL4 Missense_Mutation p.Y422C 0.45 deleterious(0) probably_damaging(0.998) TCGA-BR-8372-01 17 7230237 7230237 T C NEURL4 Silent p.P295P 0.35 TCGA-BR-8372-01 17 72851126 72851126 A T GRIN2C Missense_Mutation p.F36I 0.19 deleterious(0.01) probably_damaging(0.945) TCGA-BR-8372-01 17 72916353 72916353 A C USH1G Missense_Mutation p.L193R 0.33 tolerated(0.32) possibly_damaging(0.483) TCGA-BR-8372-01 17 73008915 73008915 T C ICT1 Missense_Mutation p.L45P 0.31 deleterious(0) probably_damaging(0.938) TCGA-BR-8372-01 17 73043606 73043606 A C KCTD2 Missense_Mutation p.R87S 0.18 deleterious(0) probably_damaging(0.977) TCGA-BR-8372-01 17 73485723 73485723 T C KIAA0195 Missense_Mutation p.Y312H 0.30 tolerated(0.46) benign(0.004) TCGA-BR-8372-01 17 7350229 7350229 C T CHRNB1 Silent p.S107S 0.29 TCGA-BR-8372-01 17 73504338 73504338 G A CASKIN2 Silent p.N41N 0.17 TCGA-BR-8372-01 17 73750744 73750744 A T ITGB4 Missense_Mutation p.Y1469F 0.07 tolerated_low_confidence(0.42) benign(0.342) TCGA-BR-8372-01 17 73836398 73836398 G T UNC13D Silent p.R256R 0.38 TCGA-BR-8372-01 17 73945329 73945329 C A ACOX1 Missense_Mutation p.G566V 0.06 deleterious(0) probably_damaging(0.999) TCGA-BR-8372-01 17 74387141 74387141 G A UBE2O Silent p.I1254I 0.37 TCGA-BR-8372-01 17 74562074 74562074 T C ST6GALNAC2 3'UTR 0.20 TCGA-BR-8372-01 17 74622396 74622396 T G ST6GALNAC1 Missense_Mutation p.M464L 0.25 benign(0.003) TCGA-BR-8372-01 17 7612568 7612568 G - EFNB3 Frame_Shift_Del p.L235Wfs*59 0.22 TCGA-BR-8372-01 17 78013751 78013751 A G CCDC40 Silent p.E78E 0.40 TCGA-BR-8372-01 17 78261867 78261868 - C RNF213 Frame_Shift_Ins p.L174Pfs*16 0.28 TCGA-BR-8372-01 17 78319491 78319491 C T RNF213 Silent p.H2452H 0.39 TCGA-BR-8372-01 17 7978948 7978948 A G ALOX12B Missense_Mutation p.I540T 0.06 deleterious(0) probably_damaging(0.999) TCGA-BR-8372-01 17 79870360 79870360 C T SIRT7 Missense_Mutation p.A379T 0.34 tolerated(0.19) benign(0.003) TCGA-BR-8372-01 17 80014641 80014641 A G GPS1 Missense_Mutation p.K458R 0.24 deleterious(0) possibly_damaging(0.781) TCGA-BR-8372-01 17 80049317 80049317 G A FASN Missense_Mutation p.R425W 0.44 tolerated(0.18) probably_damaging(0.98) TCGA-BR-8372-01 17 80400208 80400208 C - HEXDC Frame_Shift_Del p.R502Afs*71 0.29 TCGA-BR-8372-01 17 80400297 80400298 - G HEXDC Frame_Shift_Ins p.A532Gfs*31 0.46 TCGA-BR-8372-01 17 81043007 81043008 - A METRNL Frame_Shift_Ins p.T124Nfs*51 0.23 TCGA-BR-8372-01 17 8647984 8647984 G A CCDC42 5'UTR 0.30 TCGA-BR-8372-01 17 8791599 8791599 C T PIK3R5 Missense_Mutation p.R502H 0.29 deleterious(0) probably_damaging(0.998) TCGA-BR-8372-01 18 28914077 28914077 T C DSG1 Missense_Mutation p.V306A 0.35 tolerated(0.65) benign(0.098) TCGA-BR-8372-01 18 3084001 3084001 A G MYOM1 Missense_Mutation p.V1455A 0.45 deleterious(0) possibly_damaging(0.452) TCGA-BR-8372-01 18 3253948 3253948 T C MYL12A Silent p.N81N 0.41 TCGA-BR-8372-01 18 34310665 34310665 T C FHOD3 Silent p.S983S 0.07 TCGA-BR-8372-01 18 43534484 43534484 A - EPG5 Frame_Shift_Del p.L295* 0.27 TCGA-BR-8372-01 18 44392466 44392466 C A PIAS2 Missense_Mutation p.S599I 0.27 tolerated_low_confidence(0.19) benign(0) TCGA-BR-8372-01 18 44560351 44560351 T A TCEB3B Nonsense_Mutation p.K429* 0.31 TCGA-BR-8372-01 18 46287883 46287883 G T CTIF Missense_Mutation p.E400D 0.10 deleterious(0.03) benign(0.13) TCGA-BR-8372-01 18 48575209 48575209 C T SMAD4 Nonsense_Mutation p.R135* 0.38 TCGA-BR-8372-01 18 48591918 48591918 C T SMAD4 Missense_Mutation p.R361C 0.32 deleterious(0) probably_damaging(1) TCGA-BR-8372-01 18 51686245 51686245 G A MBD2 Missense_Mutation p.R380C 0.37 deleterious(0) probably_damaging(1) TCGA-BR-8372-01 18 52544862 52544862 G A RAB27B Missense_Mutation p.G16R 0.39 deleterious(0) probably_damaging(1) TCGA-BR-8372-01 18 56587463 56587463 T C ZNF532 Silent p.H648H 0.35 TCGA-BR-8372-01 18 58039381 58039381 C T MC4R Missense_Mutation p.A68T 0.33 deleterious(0.02) probably_damaging(0.997) TCGA-BR-8372-01 18 6887167 6887167 G A ARHGAP28 Missense_Mutation p.V330I 0.27 tolerated(0.3) benign(0.002) TCGA-BR-8372-01 18 6958590 6958590 G A LAMA1 Missense_Mutation p.T2617M 0.23 deleterious(0.01) possibly_damaging(0.87) TCGA-BR-8372-01 18 7016644 7016644 G A LAMA1 Silent p.G945G 0.32 TCGA-BR-8372-01 18 7032152 7032152 G A LAMA1 Silent p.R729R 0.26 TCGA-BR-8372-01 18 72913630 72913630 T C ZADH2 Missense_Mutation p.K292R 0.36 tolerated(0.06) benign(0.035) TCGA-BR-8372-01 18 74154511 74154511 G A ZNF516 Missense_Mutation p.P167L 0.38 tolerated(0.07) benign(0.003) TCGA-BR-8372-01 18 74962917 74962917 T C GALR1 Missense_Mutation p.V138A 0.28 tolerated(0.44) possibly_damaging(0.872) TCGA-BR-8372-01 19 10204421 10204421 T A ANGPTL6 Missense_Mutation p.Q300L 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8372-01 19 10599967 10599967 A G KEAP1 Missense_Mutation p.Y537H 0.23 deleterious(0) possibly_damaging(0.789) TCGA-BR-8372-01 19 10675651 10675653 CTT - KRI1 In_Frame_Del p.K82del 0.29 TCGA-BR-8372-01 19 10781711 10781711 A G ILF3 Missense_Mutation p.Y22C 0.50 deleterious(0) probably_damaging(0.999) TCGA-BR-8372-01 19 10823521 10823521 T C QTRT1 Missense_Mutation p.C317R 0.07 deleterious(0) probably_damaging(0.998) TCGA-BR-8372-01 19 11015633 11015634 - TG CARM1 Frame_Shift_Ins p.F80Sfs*46 0.42 TCGA-BR-8372-01 19 11363591 11363591 A G DOCK6 Missense_Mutation p.V59A 0.32 deleterious(0.03) benign(0.017) TCGA-BR-8372-01 19 11976931 11976931 G A ZNF439 5'UTR 0.25 TCGA-BR-8372-01 19 12155893 12155894 - CA ZNF878 Frame_Shift_Ins p.G108Vfs*6 0.30 TCGA-BR-8372-01 19 12461809 12461809 C T ZNF442 Missense_Mutation p.R197Q 0.30 tolerated(0.72) benign(0.037) TCGA-BR-8372-01 19 12502011 12502011 C G ZNF799 Missense_Mutation p.A401P 0.34 deleterious(0.03) probably_damaging(0.976) TCGA-BR-8372-01 19 1254309 1254309 T C MIDN Silent p.A176A 0.42 TCGA-BR-8372-01 19 12866252 12866252 A G BEST2 Silent p.V232V 0.39 TCGA-BR-8372-01 19 12911784 12911784 A G PRDX2 Missense_Mutation p.L68P 0.26 tolerated(0.05) possibly_damaging(0.719) TCGA-BR-8372-01 19 13410047 13410047 G A CACNA1A Silent p.D800D 0.25 TCGA-BR-8372-01 19 1356329 1356329 T C MUM1 5'UTR 0.22 TCGA-BR-8372-01 19 14247291 14247296 GCAGGG - ASF1B 5'UTR 0.24 TCGA-BR-8372-01 19 14562741 14562741 C - PKN1 Frame_Shift_Del p.F366Sfs*2 0.29 TCGA-BR-8372-01 19 1488236 1488236 C T PCSK4 Missense_Mutation p.R113H 0.18 deleterious(0) probably_damaging(0.915) TCGA-BR-8372-01 19 14883284 14883284 C A EMR2 Silent p.S75S 0.40 TCGA-BR-8372-01 19 15222547 15222547 C - SYDE1 Frame_Shift_Del p.T510Pfs*20 0.25 TCGA-BR-8372-01 19 15366362 15366362 G A BRD4 Missense_Mutation p.T598M 0.05 possibly_damaging(0.791) TCGA-BR-8372-01 19 15483910 15483910 T C AKAP8 Missense_Mutation p.M205V 0.40 tolerated(0.51) benign(0.003) TCGA-BR-8372-01 19 15535043 15535043 G - WIZ Frame_Shift_Del p.Q726Rfs*44 0.33 TCGA-BR-8372-01 19 15770043 15770043 C A CYP4F3 Missense_Mutation p.Q471K 0.24 tolerated(0.05) possibly_damaging(0.558) TCGA-BR-8372-01 19 15989733 15989733 G T CYP4F2 Missense_Mutation p.Q471K 0.09 deleterious(0.04) probably_damaging(0.954) TCGA-BR-8372-01 19 16000481 16000481 C T CYP4F2 Missense_Mutation p.A224T 0.30 tolerated(0.09) benign(0.19) TCGA-BR-8372-01 19 16025591 16025591 G A CYP4F11 Silent p.D410D 0.31 TCGA-BR-8372-01 19 1612274 1612274 G A TCF3 Intron 0.22 TCGA-BR-8372-01 19 16989392 16989392 G A SIN3B Missense_Mutation p.A1115T 0.58 tolerated(0.49) benign(0.184) TCGA-BR-8372-01 19 17448849 17448849 C - GTPBP3 Frame_Shift_Del p.G31Afs*9 0.32 TCGA-BR-8372-01 19 18277087 18277087 G A PIK3R2 Missense_Mutation p.E512K 0.33 deleterious(0.01) benign(0.318) TCGA-BR-8372-01 19 18507103 18507103 C A LRRC25 Missense_Mutation p.R224L 0.37 deleterious(0) benign(0.097) TCGA-BR-8372-01 19 18684198 18684198 A T UBA52 Missense_Mutation p.I30F 0.08 deleterious(0.02) benign(0.096) TCGA-BR-8372-01 19 18684544 18684546 ACA - UBA52 In_Frame_Del p.N60del 0.12 TCGA-BR-8372-01 19 19166111 19166111 T C ARMC6 Missense_Mutation p.I354T 0.08 deleterious(0) possibly_damaging(0.889) TCGA-BR-8372-01 19 19905493 19905493 T C ZNF506 Silent p.E401E 0.08 TCGA-BR-8372-01 19 21203611 21203611 T C ZNF430 Splice_Site p.X1_splice 0.28 TCGA-BR-8372-01 19 21264999 21264999 C T ZNF714 5'Flank 0.33 TCGA-BR-8372-01 19 21720712 21720712 A G ZNF429 Silent p.K619K 0.17 TCGA-BR-8372-01 19 22154210 22154210 G A ZNF208 Missense_Mutation p.P1209L 0.21 tolerated(0.54) benign(0.008) TCGA-BR-8372-01 19 22157496 22157496 T G ZNF208 Missense_Mutation p.K114Q 0.30 tolerated(0.24) benign(0.183) TCGA-BR-8372-01 19 33621197 33621197 T C GPATCH1 3'UTR 0.36 TCGA-BR-8372-01 19 33663258 33663258 G T WDR88 Missense_Mutation p.R385M 0.24 tolerated(0.08) possibly_damaging(0.827) TCGA-BR-8372-01 19 35989794 35989795 - C DMKN Frame_Shift_Ins p.V456Sfs*61 0.30 TCGA-BR-8372-01 19 36128416 36128416 G A RBM42 Missense_Mutation p.R468H 0.37 deleterious(0) unknown(0) TCGA-BR-8372-01 19 36223175 36223175 C - KMT2B Frame_Shift_Del p.R1911Dfs*23 0.25 TCGA-BR-8372-01 19 36370291 36370291 A G APLP1 Missense_Mutation p.Q635R 0.27 deleterious(0) probably_damaging(0.99) TCGA-BR-8372-01 19 36728315 36728315 C T ZNF146 3'UTR 0.47 TCGA-BR-8372-01 19 37853830 37853830 C T HKR1 Missense_Mutation p.A378V 0.30 deleterious(0) possibly_damaging(0.455) TCGA-BR-8372-01 19 38590640 38590640 G A SIPA1L3 Silent p.T568T 0.40 TCGA-BR-8372-01 19 38621275 38621275 G A SIPA1L3 Silent p.R1002R 0.37 TCGA-BR-8372-01 19 38692591 38692591 A G SIPA1L3 Missense_Mutation p.S1692G 0.21 tolerated(0.22) benign(0.439) TCGA-BR-8372-01 19 39207889 39207889 C T ACTN4 Missense_Mutation p.T359M 0.34 deleterious(0) probably_damaging(0.999) TCGA-BR-8372-01 19 40029888 40029888 T C EID2 3'UTR 0.25 TCGA-BR-8372-01 19 40149189 40149189 G A LGALS16 Missense_Mutation p.R61H 0.29 tolerated(0.54) benign(0.001) TCGA-BR-8372-01 19 40366349 40366349 C T FCGBP Missense_Mutation p.G4629R 0.33 possibly_damaging(0.792) TCGA-BR-8372-01 19 40389699 40389699 C T FCGBP Missense_Mutation p.G2828E 0.31 benign(0.326) TCGA-BR-8372-01 19 40398082 40398082 G A FCGBP Silent p.D2295D 0.17 TCGA-BR-8372-01 19 40421304 40421304 C T FCGBP Missense_Mutation p.V873M 0.43 probably_damaging(0.996) TCGA-BR-8372-01 19 4048234 4048234 T G ZBTB7A Missense_Mutation p.K424T 0.36 deleterious(0) possibly_damaging(0.489) TCGA-BR-8372-01 19 4099311 4099311 C T MAP2K2 Silent p.P269P 0.33 TCGA-BR-8372-01 19 41026037 41026037 G A SPTBN4 Silent p.A1211A 0.35 TCGA-BR-8372-01 19 41509905 41509905 G A CYP2B6 Splice_Site p.X58_splice 0.45 TCGA-BR-8372-01 19 41726645 41726645 C T AXL Missense_Mutation p.P64S 0.24 tolerated(0.23) possibly_damaging(0.512) TCGA-BR-8372-01 19 41888975 41888975 T - TMEM91 Intron 0.18 TCGA-BR-8372-01 19 41920016 41920016 C T BCKDHA Silent p.A146A 0.29 TCGA-BR-8372-01 19 42402713 42402713 T C ARHGEF1 Missense_Mutation p.V430A 0.58 tolerated(0.15) benign(0.398) TCGA-BR-8372-01 19 42584319 42584319 C T ZNF574 Missense_Mutation p.R521W 0.26 deleterious(0) probably_damaging(0.965) TCGA-BR-8372-01 19 42796883 42796883 C - CIC Frame_Shift_Del p.P1116Qfs*45 0.34 TCGA-BR-8372-01 19 43579581 43579581 C T PSG2 Missense_Mutation p.A212T 0.35 tolerated(1) benign(0.082) TCGA-BR-8372-01 19 43922422 43922422 C T TEX101 Missense_Mutation p.A226V 0.40 tolerated(0.89) benign(0) TCGA-BR-8372-01 19 44096013 44096013 A G IRGQ 3'UTR 0.19 TCGA-BR-8372-01 19 44222940 44222940 T C IRGC Missense_Mutation p.L77P 0.12 deleterious(0) probably_damaging(0.954) TCGA-BR-8372-01 19 44676323 44676323 A G ZNF226 Missense_Mutation p.Y33C 0.32 deleterious(0) probably_damaging(0.993) TCGA-BR-8372-01 19 45296747 45296747 C T CBLC Missense_Mutation p.T385I 0.22 deleterious(0.04) possibly_damaging(0.511) TCGA-BR-8372-01 19 45515448 45515448 T C RELB Missense_Mutation p.F140L 0.21 deleterious(0) probably_damaging(0.999) TCGA-BR-8372-01 19 45528941 45528941 C T RELB Nonsense_Mutation p.Q278* 0.28 TCGA-BR-8372-01 19 45655847 45655847 G A NKPD1 Silent p.P616P 0.33 TCGA-BR-8372-01 19 45973963 45973963 A G FOSB Missense_Mutation p.Q68R 0.36 deleterious(0) benign(0.069) TCGA-BR-8372-01 19 46890442 46890442 G A PPP5C Missense_Mutation p.E333K 0.25 deleterious(0) probably_damaging(0.977) TCGA-BR-8372-01 19 47823944 47823944 G A C5AR1 Missense_Mutation p.G304S 0.06 deleterious(0.04) possibly_damaging(0.808) TCGA-BR-8372-01 19 48385411 48385411 C T SULT2A1 Nonsense_Mutation p.W134* 0.21 TCGA-BR-8372-01 19 4844784 4844784 C T PLIN3 Missense_Mutation p.V286I 0.26 deleterious(0.04) benign(0.159) TCGA-BR-8372-01 19 49384221 49384221 A C PPP1R15A 3'Flank 0.46 TCGA-BR-8372-01 19 49513257 49513257 G A RUVBL2 Silent p.T199T 0.34 TCGA-BR-8372-01 19 49658190 49658190 A G HRC Missense_Mutation p.L102P 0.39 tolerated(0.16) benign(0.272) TCGA-BR-8372-01 19 49962308 49962308 G A ALDH16A1 Silent p.A95A 0.31 TCGA-BR-8372-01 19 49994429 49994429 C T RPL13A Intron 0.27 TCGA-BR-8372-01 19 50140109 50140109 G A RRAS Silent p.L106L 0.36 TCGA-BR-8372-01 19 50360301 50360303 AAG - PTOV1 In_Frame_Del p.K212del 0.34 TCGA-BR-8372-01 19 50881507 50881507 T C NR1H2 Missense_Mutation p.S95P 0.31 deleterious(0) probably_damaging(0.998) TCGA-BR-8372-01 19 51017889 51017889 G A ASPDH 5'Flank 0.30 TCGA-BR-8372-01 19 51853588 51853588 G A ETFB Missense_Mutation p.P236S 0.25 tolerated_low_confidence(0.06) probably_damaging(1) TCGA-BR-8372-01 19 5218436 5218436 G A PTPRS Missense_Mutation p.T1348I 0.33 deleterious(0) possibly_damaging(0.77) TCGA-BR-8372-01 19 54677780 54677780 G A MBOAT7 Silent p.S459S 0.41 TCGA-BR-8372-01 19 54711209 54711209 A G RPS9 Intron 0.23 TCGA-BR-8372-01 19 54967856 54967856 C T LENG8 Missense_Mutation p.A496V 0.38 tolerated(0.19) benign(0.012) TCGA-BR-8372-01 19 55148284 55148284 C A LILRB1 Silent p.P638P 0.18 TCGA-BR-8372-01 19 55508826 55508826 A G NLRP2 Silent p.T1007T 0.20 TCGA-BR-8372-01 19 55993117 55993117 C T ZNF628 Missense_Mutation p.T186M 0.48 deleterious(0) probably_damaging(0.989) TCGA-BR-8372-01 19 55994462 55994462 C T ZNF628 Silent p.A634A 0.54 TCGA-BR-8372-01 19 56249537 56249537 T C NLRP9 Silent p.A68A 0.05 TCGA-BR-8372-01 19 57327277 57327277 T C PEG3 Missense_Mutation p.R845G 0.33 deleterious(0.04) benign(0.044) TCGA-BR-8372-01 19 5778593 5778593 C T CATSPERD Missense_Mutation p.T768M 0.34 tolerated(0.1) possibly_damaging(0.687) TCGA-BR-8372-01 19 5896923 5896923 G A NDUFA11 Silent p.F61F 0.28 TCGA-BR-8372-01 19 7619868 7619868 C T PNPLA6 Silent p.T918T 0.36 TCGA-BR-8372-01 19 7688074 7688074 G A XAB2 Silent p.D407D 0.35 TCGA-BR-8372-01 19 7960576 7960576 T C LRRC8E Missense_Mutation p.Y30H 0.31 deleterious(0) probably_damaging(0.996) TCGA-BR-8372-01 19 8028348 8028348 A - ELAVL1 3'UTR 0.31 TCGA-BR-8372-01 19 8188452 8188452 A G FBN3 Missense_Mutation p.F993S 0.42 deleterious(0.01) possibly_damaging(0.906) TCGA-BR-8372-01 19 847946 847946 G A PRTN3 Missense_Mutation p.V250M 0.23 tolerated(0.23) possibly_damaging(0.525) TCGA-BR-8372-01 19 8609293 8609293 G A MYO1F Missense_Mutation p.T471M 0.38 tolerated(0.11) benign(0.108) TCGA-BR-8372-01 19 9057815 9057815 A G MUC16 Silent p.P9877P 0.45 TCGA-BR-8372-01 19 9271302 9271302 G A ZNF317 Silent p.T327T 0.35 TCGA-BR-8372-01 19 9271423 9271423 G A ZNF317 Missense_Mutation p.G368S 0.24 deleterious(0) probably_damaging(0.94) TCGA-BR-8372-01 19 9875702 9875702 A - ZNF846 5'UTR 0.14 TCGA-BR-8372-01 19 994293 994293 C T WDR18 Missense_Mutation p.R417W 0.40 deleterious(0) probably_damaging(0.986) TCGA-BR-8372-01 1 100546165 100546165 A G HIAT1 Missense_Mutation p.T406A 0.36 tolerated(0.75) benign(0.002) TCGA-BR-8372-01 1 10166465 10166465 G A UBE4B Silent p.A340A 0.30 TCGA-BR-8372-01 1 103345424 103345424 T C COL11A1 Missense_Mutation p.T1697A 0.46 unknown(0) TCGA-BR-8372-01 1 10690050 10690050 C T PEX14 3'UTR 0.34 TCGA-BR-8372-01 1 10713683 10713683 T C CASZ1 Missense_Mutation p.T811A 0.30 tolerated_low_confidence(0.8) benign(0.003) TCGA-BR-8372-01 1 108116789 108116789 G A VAV3 Silent p.I794I 0.35 TCGA-BR-8372-01 1 109440708 109440708 C T GPSM2 Missense_Mutation p.A181V 0.29 deleterious(0) probably_damaging(0.998) TCGA-BR-8372-01 1 109793562 109793562 T C CELSR2 Silent p.P287P 0.32 TCGA-BR-8372-01 1 110257571 110257571 G T GSTM5 Missense_Mutation p.E121D 0.29 tolerated(0.12) benign(0.014) TCGA-BR-8372-01 1 111217183 111217183 G A KCNA3 Silent p.C83C 0.67 TCGA-BR-8372-01 1 1120411 1120411 A G TTLL10 Silent p.E441E 0.30 TCGA-BR-8372-01 1 114940173 114940173 T C TRIM33 3'UTR 0.41 TCGA-BR-8372-01 1 117618443 117618443 C T TTF2 Missense_Mutation p.R413W 0.29 tolerated(0.06) benign(0.39) TCGA-BR-8372-01 1 12024291 12024291 C T PLOD1 Missense_Mutation p.A421V 0.36 deleterious(0) benign(0.141) TCGA-BR-8372-01 1 1244909 1244909 C T PUSL1 Silent p.R133R 0.19 TCGA-BR-8372-01 1 146767247 146767247 T C CHD1L 3'UTR 0.46 TCGA-BR-8372-01 1 149399184 149399184 G T HIST2H3PS2 3'Flank 0.27 TCGA-BR-8372-01 1 150233969 150233969 C T CA14 Missense_Mutation p.A63V 0.36 tolerated(0.07) benign(0.003) TCGA-BR-8372-01 1 150789283 150789283 G - ARNT Frame_Shift_Del p.R595Gfs*11 0.17 TCGA-BR-8372-01 1 153658344 153658344 A G NPR1 Silent p.T556T 0.32 TCGA-BR-8372-01 1 153660166 153660166 T C NPR1 Missense_Mutation p.S717P 0.33 deleterious(0) possibly_damaging(0.653) TCGA-BR-8372-01 1 154841703 154841703 G A KCNN3 Silent p.A246A 0.37 TCGA-BR-8372-01 1 155308103 155308103 T C ASH1L Silent p.E2860E 0.07 TCGA-BR-8372-01 1 15541718 15541718 T C TMEM51 Silent p.A45A 0.35 TCGA-BR-8372-01 1 156263285 156263285 C T C1orf85 Missense_Mutation p.R294Q 0.43 tolerated(0.06) possibly_damaging(0.885) TCGA-BR-8372-01 1 156821914 156821914 C - INSRR Frame_Shift_Del p.G236Afs*12 0.33 TCGA-BR-8372-01 1 156899200 156899200 C T LRRC71 Silent p.G375G 0.43 TCGA-BR-8372-01 1 156915929 156915929 C T ARHGEF11 Missense_Mutation p.R907Q 0.19 deleterious(0) probably_damaging(0.999) TCGA-BR-8372-01 1 158225951 158225951 C A CD1A Missense_Mutation p.F161L 0.34 tolerated(0.07) benign(0.002) TCGA-BR-8372-01 1 158435710 158435710 A T OR10K1 Missense_Mutation p.Y120F 0.35 deleterious(0.03) benign(0.126) TCGA-BR-8372-01 1 158644339 158644339 C T SPTA1 Silent p.Q413Q 0.32 TCGA-BR-8372-01 1 158908285 158908285 A C PYHIN1 Missense_Mutation p.S122R 0.44 tolerated(0.16) benign(0.008) TCGA-BR-8372-01 1 159019338 159019338 C A IFI16 Intron 0.23 TCGA-BR-8372-01 1 160325747 160325747 C T NCSTN Missense_Mutation p.T517M 0.20 tolerated(0.11) benign(0.372) TCGA-BR-8372-01 1 161133984 161133984 C T USP21 Missense_Mutation p.R417W 0.30 tolerated(0.09) benign(0.005) TCGA-BR-8372-01 1 161697204 161697204 G A FCRLB Missense_Mutation p.G345S 0.28 tolerated(0.8) benign(0.001) TCGA-BR-8372-01 1 16247461 16247461 G A SPEN Missense_Mutation p.G578S 0.30 benign(0.277) TCGA-BR-8372-01 1 16255883 16255883 A - SPEN Frame_Shift_Del p.I1052Sfs*40 0.15 TCGA-BR-8372-01 1 166818871 166818871 C T POGK Missense_Mutation p.A352V 0.40 tolerated(0.23) benign(0.007) TCGA-BR-8372-01 1 16903879 16903879 G T NBPF1 Missense_Mutation p.L613M 0.08 deleterious(0.01) possibly_damaging(0.9) TCGA-BR-8372-01 1 16918375 16918375 C T NBPF1 Missense_Mutation p.A48T 0.05 tolerated(1) possibly_damaging(0.682) TCGA-BR-8372-01 1 169586331 169586331 G A SELP Missense_Mutation p.P139L 0.32 tolerated(0.4) benign(0.005) TCGA-BR-8372-01 1 170705408 170705408 C T PRRX1 3'UTR 0.46 TCGA-BR-8372-01 1 171293332 171293332 A G FMO4 Missense_Mutation p.D126G 0.30 deleterious(0) benign(0.345) TCGA-BR-8372-01 1 172522402 172522402 T C SUCO Silent p.D60D 0.31 TCGA-BR-8372-01 1 17281831 17281831 C T CROCC Missense_Mutation p.R1164C 0.35 benign(0.041) TCGA-BR-8372-01 1 17313302 17313302 T C ATP13A2 Missense_Mutation p.N1078S 0.12 deleterious(0) probably_damaging(0.999) TCGA-BR-8372-01 1 17431417 17431417 G A PADI2 Missense_Mutation p.R78W 0.22 tolerated(0.07) possibly_damaging(0.766) TCGA-BR-8372-01 1 177133690 177133690 C T ASTN1 Silent p.T41T 0.40 TCGA-BR-8372-01 1 17914943 17914943 C A ARHGEF10L Missense_Mutation p.P76T 0.27 tolerated_low_confidence(0.21) benign(0.021) TCGA-BR-8372-01 1 179363045 179363045 T C AXDND1 Missense_Mutation p.Y291H 0.31 deleterious(0) probably_damaging(0.961) TCGA-BR-8372-01 1 179887081 179887081 G T TOR1AIP1 Missense_Mutation p.G487C 0.37 deleterious(0.02) probably_damaging(0.973) TCGA-BR-8372-01 1 17990974 17990974 G A ARHGEF10L Missense_Mutation p.V965M 0.58 tolerated(0.18) benign(0.003) TCGA-BR-8372-01 1 180794334 180794334 A C XPR1 Missense_Mutation p.S330R 0.29 deleterious(0) probably_damaging(0.995) TCGA-BR-8372-01 1 182848383 182848383 A C DHX9 Splice_Site p.X784_splice 0.37 TCGA-BR-8372-01 1 185171822 185171822 T C SWT1 Silent p.S520S 0.28 TCGA-BR-8372-01 1 186278205 186278205 T C PRG4 Silent p.V1118V 0.24 TCGA-BR-8372-01 1 18809662 18809662 A G KLHDC7A Silent p.G729G 0.19 TCGA-BR-8372-01 1 18958157 18958157 C - PAX7 Frame_Shift_Del p.R22Afs*38 0.30 TCGA-BR-8372-01 1 19166729 19166729 G T TAS1R2 Silent p.S628S 0.34 TCGA-BR-8372-01 1 19202927 19202927 G A ALDH4A1 Missense_Mutation p.A407V 0.20 deleterious(0.03) possibly_damaging(0.896) TCGA-BR-8372-01 1 19480401 19480401 A C UBR4 Missense_Mutation p.L2164R 0.34 probably_damaging(0.998) TCGA-BR-8372-01 1 19505634 19505635 AG - UBR4 Frame_Shift_Del p.S755Cfs*12 0.29 TCGA-BR-8372-01 1 19564605 19564605 T C EMC1 Missense_Mutation p.Y373C 0.45 deleterious(0.04) benign(0.004) TCGA-BR-8372-01 1 196342340 196342340 A G KCNT2 Silent p.L445L 0.18 TCGA-BR-8372-01 1 19634729 19634729 T C AKR7A2 Missense_Mutation p.N172D 0.24 deleterious(0) probably_damaging(0.999) TCGA-BR-8372-01 1 196964968 196964968 A T CFHR5 Silent p.I243I 0.33 TCGA-BR-8372-01 1 197032158 197032158 T A F13B Missense_Mutation p.N32Y 0.32 deleterious(0.01) probably_damaging(0.986) TCGA-BR-8372-01 1 197059338 197059338 A G ASPM Silent p.L3273L 0.33 TCGA-BR-8372-01 1 198492652 198492652 G T ATP6V1G3 Missense_Mutation p.Q76K 0.17 tolerated(0.11) benign(0.262) TCGA-BR-8372-01 1 200827020 200827020 A - CAMSAP2 Frame_Shift_Del p.M1426* 0.27 TCGA-BR-8372-01 1 202288142 202288142 G A LGR6 Missense_Mutation p.C904Y 0.30 deleterious(0.02) benign(0.008) TCGA-BR-8372-01 1 203667346 203667346 C - ATP2B4 Frame_Shift_Del p.K89Sfs*6 0.28 TCGA-BR-8372-01 1 205131199 205131199 T C DSTYK Missense_Mutation p.S595G 0.11 deleterious(0.02) benign(0.051) TCGA-BR-8372-01 1 205554060 205554060 T A MFSD4 Missense_Mutation p.S306T 0.22 tolerated(0.6) benign(0.047) TCGA-BR-8372-01 1 206669460 206669460 A G IKBKE Silent p.P711P 0.31 TCGA-BR-8372-01 1 206757987 206757987 T - RASSF5 Frame_Shift_Del p.F321Lfs*39 0.29 TCGA-BR-8372-01 1 206821426 206821426 C A DYRK3 Missense_Mutation p.L295I 0.08 deleterious(0) probably_damaging(0.995) TCGA-BR-8372-01 1 21191710 21191710 G A EIF4G3 Missense_Mutation p.R840W 0.32 deleterious(0) probably_damaging(1) TCGA-BR-8372-01 1 212799665 212799665 G T FAM71A Silent p.G482G 0.30 TCGA-BR-8372-01 1 212960901 212960901 C A NSL1 Missense_Mutation p.D105Y 0.37 deleterious(0.01) probably_damaging(0.993) TCGA-BR-8372-01 1 21306905 21306905 G - EIF4G3 Frame_Shift_Del p.Q90Nfs*43 0.30 TCGA-BR-8372-01 1 214830653 214830653 A - CENPF Frame_Shift_Del p.S2957Afs*6 0.27 TCGA-BR-8372-01 1 215259855 215259855 C T KCNK2 Missense_Mutation p.T64M 0.30 deleterious(0.02) possibly_damaging(0.742) TCGA-BR-8372-01 1 215987141 215987141 G A USH2A Nonsense_Mutation p.R3226* 0.06 TCGA-BR-8372-01 1 22141090 22141090 G A LDLRAD2 Silent p.A95A 0.35 TCGA-BR-8372-01 1 222736617 222736617 A G TAF1A Missense_Mutation p.L328P 0.20 tolerated(0.05) probably_damaging(1) TCGA-BR-8372-01 1 222827777 222827777 A G MIA3 Missense_Mutation p.Q1475R 0.46 tolerated(0.06) possibly_damaging(0.603) TCGA-BR-8372-01 1 2237624 2237624 C T SKI Missense_Mutation p.R645W 0.42 deleterious(0) possibly_damaging(0.855) TCGA-BR-8372-01 1 223947066 223947066 T C CAPN2 Missense_Mutation p.V471A 0.23 deleterious(0) probably_damaging(1) TCGA-BR-8372-01 1 22973964 22973964 G A C1QC Silent p.A142A 0.38 TCGA-BR-8372-01 1 230846346 230846346 A G AGT Missense_Mutation p.L84P 0.31 tolerated(0.07) benign(0.409) TCGA-BR-8372-01 1 235345019 235345019 T C ARID4B Missense_Mutation p.D1072G 0.07 deleterious(0.02) benign(0.379) TCGA-BR-8372-01 1 235345283 235345283 A G ARID4B Missense_Mutation p.L984P 0.14 tolerated_low_confidence(0.19) benign(0.006) TCGA-BR-8372-01 1 236143154 236143154 G A NID1 Silent p.Y1159Y 0.38 TCGA-BR-8372-01 1 24078404 24078404 A - TCEB3 Frame_Shift_Del p.N465Mfs*19 0.63 TCGA-BR-8372-01 1 24447436 24447436 A G IL22RA1 Silent p.S528S 0.25 TCGA-BR-8372-01 1 245006587 245006587 T - COX20 3'UTR 0.35 TCGA-BR-8372-01 1 247021071 247021071 T C AHCTF1 Missense_Mutation p.E1402G 0.33 tolerated(0.11) benign(0.015) TCGA-BR-8372-01 1 247464040 247464040 G A ZNF496 Silent p.N515N 0.16 TCGA-BR-8372-01 1 248201652 248201652 C A OR2L2 Missense_Mutation p.T28N 0.28 tolerated(0.09) benign(0.058) TCGA-BR-8372-01 1 248551111 248551111 G A OR2T6 Missense_Mutation p.V68I 0.34 tolerated(0.18) benign(0) TCGA-BR-8372-01 1 248789732 248789732 T - OR2T11 Frame_Shift_Del p.K233Rfs*10 0.26 TCGA-BR-8372-01 1 25780773 25780773 G A TMEM57 Missense_Mutation p.V125M 0.30 deleterious(0) probably_damaging(0.995) TCGA-BR-8372-01 1 26349202 26349202 T C EXTL1 Missense_Mutation p.V22A 0.22 tolerated(0.39) benign(0.184) TCGA-BR-8372-01 1 26800609 26800609 A - HMGN2 Frame_Shift_Del p.K43Rfs*61 0.30 TCGA-BR-8372-01 1 27101055 27101055 G A ARID1A Missense_Mutation p.R1446Q 0.25 unknown(0) TCGA-BR-8372-01 1 27218981 27218981 C A GPATCH3 Missense_Mutation p.G428C 0.30 deleterious(0) probably_damaging(1) TCGA-BR-8372-01 1 27878058 27878058 G A AHDC1 Missense_Mutation p.S190L 0.10 tolerated_low_confidence(0.12) possibly_damaging(0.519) TCGA-BR-8372-01 1 28661170 28661170 G A MED18 Missense_Mutation p.V106M 0.34 tolerated(0.16) probably_damaging(0.96) TCGA-BR-8372-01 1 29447582 29447582 G T TMEM200B Silent p.S253S 0.30 TCGA-BR-8372-01 1 31439015 31439020 GCTGGG - PUM1 In_Frame_Del p.P632_Q633del 0.34 TCGA-BR-8372-01 1 31465500 31465500 G T PUM1 Missense_Mutation p.P299T 0.15 deleterious(0) possibly_damaging(0.894) TCGA-BR-8372-01 1 32049152 32049152 G A TINAGL1 Silent p.S186S 0.35 TCGA-BR-8372-01 1 32740967 32740967 A T LCK Missense_Mutation p.E108D 0.29 deleterious(0.02) benign(0.046) TCGA-BR-8372-01 1 32843813 32843813 T C BSDC1 Intron 0.42 TCGA-BR-8372-01 1 33133933 33133933 A G RBBP4 Missense_Mutation p.I140V 0.23 tolerated(0.1) benign(0.02) TCGA-BR-8372-01 1 33272165 33272165 T C YARS Missense_Mutation p.H143R 0.06 tolerated(0.11) benign(0.214) TCGA-BR-8372-01 1 36641819 36641819 C T MAP7D1 Silent p.S290S 0.28 TCGA-BR-8372-01 1 36785312 36785312 G C SH3D21 Missense_Mutation p.V350L 0.19 tolerated(0.16) benign(0.023) TCGA-BR-8372-01 1 3750491 3750491 C T CEP104 Missense_Mutation p.V532I 0.26 tolerated(0.26) benign(0.002) TCGA-BR-8372-01 1 38423870 38423870 T G SF3A3 Missense_Mutation p.Q498H 0.32 deleterious(0) probably_damaging(1) TCGA-BR-8372-01 1 39800373 39800373 G A MACF1 Intron 0.27 TCGA-BR-8372-01 1 40363032 40363032 C T MYCL 3'UTR 0.30 TCGA-BR-8372-01 1 41285564 41285564 C T KCNQ4 Silent p.I284I 0.34 TCGA-BR-8372-01 1 42870241 42870241 G A RIMKLA Missense_Mutation p.V152M 0.26 deleterious(0) probably_damaging(0.998) TCGA-BR-8372-01 1 42880340 42880340 G A RIMKLA Missense_Mutation p.V291M 0.34 deleterious(0.04) possibly_damaging(0.812) TCGA-BR-8372-01 1 45079871 45079871 G A RNF220 Silent p.Q220Q 0.28 TCGA-BR-8372-01 1 45553711 45553711 C T ZSWIM5 Missense_Mutation p.R265H 0.33 tolerated(0.18) unknown(0) TCGA-BR-8372-01 1 46068012 46068012 G A NASP Missense_Mutation p.A65T 0.26 tolerated(0.05) probably_damaging(0.998) TCGA-BR-8372-01 1 46073055 46073055 A - NASP Frame_Shift_Del p.T160Qfs*29 0.21 TCGA-BR-8372-01 1 47904205 47904205 T C FOXD2 Missense_Mutation p.I133T 0.36 deleterious(0) probably_damaging(0.997) TCGA-BR-8372-01 1 50574837 50574837 C T ELAVL4 Intron 0.40 TCGA-BR-8372-01 1 52301819 52301819 T C NRD1 Silent p.A300A 0.24 TCGA-BR-8372-01 1 52821976 52821976 T C CC2D1B Splice_Site p.X652_splice 0.16 TCGA-BR-8372-01 1 52947290 52947291 - G ZCCHC11 Frame_Shift_Ins p.R553Kfs*4 0.24 TCGA-BR-8372-01 1 57535092 57535092 C T DAB1 Missense_Mutation p.V202M 0.26 deleterious(0.02) probably_damaging(0.973) TCGA-BR-8372-01 1 63113432 63113432 G A DOCK7 Missense_Mutation p.R250W 0.35 deleterious(0.02) probably_damaging(0.982) TCGA-BR-8372-01 1 67561988 67561988 T - C1orf141 Frame_Shift_Del p.K121Nfs*12 0.34 TCGA-BR-8372-01 1 70766480 70766480 A G ANKRD13C Silent p.N296N 0.34 TCGA-BR-8372-01 1 71437392 71437392 A G PTGER3 Intron 0.29 TCGA-BR-8372-01 1 78249019 78249019 T C FAM73A Missense_Mutation p.Y60H 0.07 deleterious(0) probably_damaging(0.975) TCGA-BR-8372-01 1 82415943 82415943 T C LPHN2 Silent p.T423T 0.25 TCGA-BR-8372-01 1 87379866 87379866 C T SEP15 5'UTR 0.31 TCGA-BR-8372-01 1 87810502 87810502 C T LMO4 3'UTR 0.36 TCGA-BR-8372-01 1 89473188 89473188 T C GBP3 3'UTR 0.30 TCGA-BR-8372-01 1 90178382 90178382 A - LRRC8C Frame_Shift_Del p.K85Nfs*12 0.23 TCGA-BR-8372-01 1 90179605 90179605 C T LRRC8C Silent p.N492N 0.37 TCGA-BR-8372-01 1 91382293 91382293 A - ZNF644 3'UTR 0.31 TCGA-BR-8372-01 1 92948991 92948991 C T GFI1 Silent p.P18P 0.43 TCGA-BR-8372-01 1 95657511 95657511 T C TMEM56 3'UTR 0.33 TCGA-BR-8372-01 1 97771791 97771791 A - DPYD Frame_Shift_Del p.F707Lfs*4 0.35 TCGA-BR-8372-01 20 1298987 1298987 A C SDCBP2 Missense_Mutation p.L67R 0.31 deleterious(0.04) probably_damaging(0.918) TCGA-BR-8372-01 20 1616978 1616978 T C SIRPG Missense_Mutation p.S202G 0.43 tolerated(0.06) benign(0.012) TCGA-BR-8372-01 20 1629991 1629991 C T SIRPG Missense_Mutation p.G46E 0.31 deleterious(0) probably_damaging(0.991) TCGA-BR-8372-01 20 16360087 16360087 C G KIF16B Missense_Mutation p.V854L 0.06 tolerated_low_confidence(0.15) benign(0.379) TCGA-BR-8372-01 20 168739 168740 - T DEFB128 Frame_Shift_Ins p.C24Mfs*4 0.28 TCGA-BR-8372-01 20 17640875 17640875 G C RRBP1 Missense_Mutation p.T93S 0.30 tolerated(0.28) probably_damaging(0.961) TCGA-BR-8372-01 20 20144799 20144799 C T C20orf26 Missense_Mutation p.R378C 0.33 tolerated(0.05) possibly_damaging(0.854) TCGA-BR-8372-01 20 20552182 20552182 G A RALGAPA2 Missense_Mutation p.R1026C 0.43 deleterious(0) possibly_damaging(0.836) TCGA-BR-8372-01 20 23431127 23431127 G A CST11 3'UTR 0.28 TCGA-BR-8372-01 20 2465247 2465247 A G ZNF343 Silent p.C120C 0.25 TCGA-BR-8372-01 20 24988531 24988531 C T ACSS1 Missense_Mutation p.R646Q 0.33 deleterious(0) probably_damaging(0.998) TCGA-BR-8372-01 20 30370194 30370194 G A TPX2 Splice_Site p.X399_splice 0.39 TCGA-BR-8372-01 20 3171871 3171871 C T DDRGK1 Missense_Mutation p.R248H 0.33 deleterious(0) probably_damaging(0.999) TCGA-BR-8372-01 20 32345064 32345064 C T ZNF341 Silent p.S284S 0.31 TCGA-BR-8372-01 20 33501910 33501911 - G ACSS2 Frame_Shift_Ins p.E221Gfs*11 0.42 TCGA-BR-8372-01 20 33764236 33764236 G A PROCR Silent p.A196A 0.27 TCGA-BR-8372-01 20 33862184 33862184 C T MMP24 Silent p.N570N 0.36 TCGA-BR-8372-01 20 34067191 34067191 C T CEP250 Missense_Mutation p.R744W 0.26 probably_damaging(0.999) TCGA-BR-8372-01 20 35060903 35060903 T C DLGAP4 Silent p.T261T 0.07 TCGA-BR-8372-01 20 35293701 35293701 G A NDRG3 Silent p.R232R 0.39 TCGA-BR-8372-01 20 35689518 35689518 A G RBL1 Missense_Mutation p.I413T 0.28 tolerated(0.41) benign(0.005) TCGA-BR-8372-01 20 36759566 36759566 A C TGM2 Silent p.P614P 0.31 TCGA-BR-8372-01 20 39726979 39726979 T C TOP1 Splice_Site p.X325_splice 0.34 TCGA-BR-8372-01 20 42826132 42826132 C T OSER1 Missense_Mutation p.V147I 0.34 tolerated(0.49) benign(0.003) TCGA-BR-8372-01 20 43034754 43034754 G A HNF4A Missense_Mutation p.A58T 0.47 tolerated(0.48) benign(0.006) TCGA-BR-8372-01 20 43108907 43108907 T C TTPAL Missense_Mutation p.F90L 0.12 deleterious(0) possibly_damaging(0.657) TCGA-BR-8372-01 20 43251662 43251662 C T ADA Missense_Mutation p.E222K 0.28 tolerated(0.51) benign(0.001) TCGA-BR-8372-01 20 43559190 43559190 C T PABPC1L Silent p.N354N 0.35 TCGA-BR-8372-01 20 43726483 43726483 A G KCNS1 Silent p.I310I 0.29 TCGA-BR-8372-01 20 44596190 44596190 G A ZNF335 Missense_Mutation p.P300S 0.37 deleterious(0.01) possibly_damaging(0.715) TCGA-BR-8372-01 20 45865224 45865224 G A ZMYND8 Missense_Mutation p.T855M 0.32 deleterious(0) probably_damaging(0.992) TCGA-BR-8372-01 20 49626482 49626482 G A KCNG1 Missense_Mutation p.R132C 0.44 deleterious(0.04) probably_damaging(0.939) TCGA-BR-8372-01 20 52199232 52199232 A G ZNF217 Missense_Mutation p.V45A 0.32 tolerated(0.93) benign(0.001) TCGA-BR-8372-01 20 54978601 54978601 G A CSTF1 Missense_Mutation p.D372N 0.27 deleterious(0) possibly_damaging(0.569) TCGA-BR-8372-01 20 57766849 57766849 C T ZNF831 Silent p.L259L 0.26 TCGA-BR-8372-01 20 6022558 6022558 C T LRRN4 Missense_Mutation p.V445I 0.28 tolerated(0.42) benign(0.003) TCGA-BR-8372-01 20 60791216 60791216 T G HRH3 Missense_Mutation p.E395A 0.30 deleterious(0) probably_damaging(0.963) TCGA-BR-8372-01 20 60794884 60794884 G A HRH3 Missense_Mutation p.T48M 0.42 deleterious(0) possibly_damaging(0.791) TCGA-BR-8372-01 20 60887363 60887363 C T LAMA5 Missense_Mutation p.A3124T 0.31 benign(0.19) TCGA-BR-8372-01 20 60904862 60904862 G A LAMA5 Missense_Mutation p.R1364C 0.47 benign(0.134) TCGA-BR-8372-01 20 60927304 60927304 G A LAMA5 Silent p.N227N 0.57 TCGA-BR-8372-01 20 61834233 61834233 G A YTHDF1 Silent p.N353N 0.36 TCGA-BR-8372-01 20 62163960 62163960 A G PTK6 Missense_Mutation p.Y251H 0.29 deleterious(0.01) benign(0.315) TCGA-BR-8372-01 20 62194113 62194113 C T HELZ2 Missense_Mutation p.S2021N 0.38 tolerated(0.17) benign(0.004) TCGA-BR-8372-01 20 62597930 62597930 T C ZNF512B Missense_Mutation p.I200V 0.31 tolerated_low_confidence(0.54) benign(0.001) TCGA-BR-8372-01 20 62701181 62701181 T G TCEA2 Intron 0.16 TCGA-BR-8372-01 20 7990877 7990877 C A TMX4 Missense_Mutation p.V88L 0.22 deleterious(0) probably_damaging(0.928) TCGA-BR-8372-01 20 8628584 8628584 C T PLCB1 Missense_Mutation p.R168C 0.25 deleterious(0.03) benign(0.018) TCGA-BR-8372-01 21 28213404 28213404 C T ADAMTS1 Missense_Mutation p.A431T 0.36 deleterious(0.04) benign(0.385) TCGA-BR-8372-01 21 31720883 31720883 G A KRTAP23-1 Silent p.S14S 0.26 TCGA-BR-8372-01 21 32513685 32513685 C T TIAM1 Missense_Mutation p.A1205T 0.31 tolerated(0.08) benign(0.027) TCGA-BR-8372-01 21 33074095 33074095 G A SCAF4 Silent p.G198G 0.22 TCGA-BR-8372-01 21 33074655 33074655 T - SCAF4 Frame_Shift_Del p.N120Mfs*25 0.32 TCGA-BR-8372-01 21 33951127 33951127 A T TCP10L Silent p.A125A 0.16 TCGA-BR-8372-01 21 33982209 33982209 T - AP000275.65 Frame_Shift_Del p.K82Nfs*27 0.27 TCGA-BR-8372-01 21 34922824 34922824 G C SON Silent p.G429G 0.38 TCGA-BR-8372-01 21 35821508 35821508 G T KCNE1 3'UTR 0.26 TCGA-BR-8372-01 21 37709238 37709238 A G MORC3 Missense_Mutation p.H60R 0.31 tolerated(0.48) benign(0.002) TCGA-BR-8372-01 21 40570880 40570880 T A BRWD1 Missense_Mutation p.D1821V 0.40 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-BR-8372-01 21 40668374 40668374 A G BRWD1 Intron 0.33 TCGA-BR-8372-01 21 41384893 41384893 A - DSCAM 3'UTR 0.56 TCGA-BR-8372-01 21 42629207 42629207 C T BACE2 Silent p.F419F 0.29 TCGA-BR-8372-01 21 43410967 43410967 T C ZBTB21 3'UTR 0.32 TCGA-BR-8372-01 21 44520704 44520704 T G U2AF1 Intron 0.12 TCGA-BR-8372-01 21 45217542 45217542 G A RRP1 Missense_Mutation p.D195N 0.37 deleterious(0.03) probably_damaging(0.928) TCGA-BR-8372-01 21 46642058 46642058 G - ADARB1 Frame_Shift_Del p.A726Pfs*121 0.23 TCGA-BR-8372-01 21 46950869 46950869 G A SLC19A1 Silent p.F322F 0.44 TCGA-BR-8372-01 21 48063467 48063467 C T PRMT2 Silent p.C20C 0.09 TCGA-BR-8372-01 22 18570922 18570922 C T PEX26 3'UTR 0.26 TCGA-BR-8372-01 22 19163996 19163996 C T SLC25A1 Silent p.A253A 0.38 TCGA-BR-8372-01 22 21800189 21800191 GAA - HIC2 In_Frame_Del p.K337del 0.37 TCGA-BR-8372-01 22 21988331 21988331 A T CCDC116 Silent p.P31P 0.11 TCGA-BR-8372-01 22 22990111 22990111 C T GGTLC2 Missense_Mutation p.A186V 0.23 tolerated(0.38) benign(0.002) TCGA-BR-8372-01 22 24122628 24122628 A C MMP11 Missense_Mutation p.T141P 0.31 deleterious(0) probably_damaging(0.999) TCGA-BR-8372-01 22 24468323 24468323 C T CABIN1 Missense_Mutation p.A832V 0.26 tolerated(0.24) benign(0.383) TCGA-BR-8372-01 22 24584463 24584463 C A SUSD2 3'UTR 0.33 TCGA-BR-8372-01 22 26422847 26422847 C T MYO18B Silent p.L2303L 0.10 TCGA-BR-8372-01 22 26423136 26423136 T G MYO18B Missense_Mutation p.L2399R 0.18 deleterious(0.04) benign(0.178) TCGA-BR-8372-01 22 26854542 26854542 T C HPS4 Missense_Mutation p.Y572C 0.24 deleterious(0) probably_damaging(0.986) TCGA-BR-8372-01 22 26932299 26932299 G - TPST2 Frame_Shift_Del p.N333Tfs*17 0.26 TCGA-BR-8372-01 22 29444421 29444421 C T ZNRF3 Silent p.C319C 0.24 TCGA-BR-8372-01 22 29838103 29838103 G A RFPL1 Missense_Mutation p.A316T 0.29 tolerated(0.17) benign(0.007) TCGA-BR-8372-01 22 29879408 29879408 G A NEFH Missense_Mutation p.A310T 0.34 deleterious(0.04) unknown(0) TCGA-BR-8372-01 22 30403132 30403132 G A MTMR3 Missense_Mutation p.R234H 0.29 deleterious(0.01) possibly_damaging(0.458) TCGA-BR-8372-01 22 32010792 32010792 C T SFI1 Missense_Mutation p.A1005V 0.24 deleterious(0.04) benign(0.368) TCGA-BR-8372-01 22 32498181 32498181 T C SLC5A1 Missense_Mutation p.I541T 0.08 tolerated(0.25) benign(0.001) TCGA-BR-8372-01 22 32620257 32620257 T C SLC5A4 Silent p.V554V 0.11 TCGA-BR-8372-01 22 32792083 32792083 G A RTCB Missense_Mutation p.S323F 0.05 tolerated(0.05) benign(0.056) TCGA-BR-8372-01 22 38323791 38323791 G T MICALL1 Silent p.P613P 0.44 TCGA-BR-8372-01 22 38610598 38610598 G A MAFF Missense_Mutation p.V70M 0.33 deleterious(0.04) probably_damaging(0.999) TCGA-BR-8372-01 22 38757474 38757474 A G RP3-449O17.1 RNA 0.13 TCGA-BR-8372-01 22 38897211 38897211 T - DDX17 Frame_Shift_Del p.K121Sfs*4 0.38 TCGA-BR-8372-01 22 39122294 39122294 T C GTPBP1 Missense_Mutation p.L417P 0.45 deleterious(0.05) probably_damaging(0.992) TCGA-BR-8372-01 22 40068244 40068244 C A CACNA1I Missense_Mutation p.T1527N 0.28 deleterious(0) possibly_damaging(0.728) TCGA-BR-8372-01 22 40366928 40366928 C T GRAP2 Missense_Mutation p.A278V 0.25 deleterious(0.01) probably_damaging(1) TCGA-BR-8372-01 22 40681709 40681709 G A TNRC6B Missense_Mutation p.V1215M 0.40 deleterious(0.03) probably_damaging(0.946) TCGA-BR-8372-01 22 41566520 41566520 G T EP300 Missense_Mutation p.W1466L 0.20 probably_damaging(1) TCGA-BR-8372-01 22 41609869 41609869 T C L3MBTL2 Intron 0.21 TCGA-BR-8372-01 22 41832766 41832766 C - TOB2 Frame_Shift_Del p.G195Afs*9 0.15 TCGA-BR-8372-01 22 43576915 43576915 G A TTLL12 Missense_Mutation p.R127C 0.39 deleterious(0) possibly_damaging(0.841) TCGA-BR-8372-01 22 46657010 46657010 A T PKDREJ Missense_Mutation p.L737H 0.26 deleterious(0) probably_damaging(1) TCGA-BR-8372-01 22 50313464 50313464 A G CRELD2 Missense_Mutation p.H100R 0.14 tolerated(0.4) benign(0.011) TCGA-BR-8372-01 22 50439591 50439591 G A IL17REL Missense_Mutation p.T10M 0.23 tolerated(0.09) benign(0.182) TCGA-BR-8372-01 22 51048208 51048208 C T MAPK8IP2 Intron 0.20 TCGA-BR-8372-01 2 100006804 100006804 T G EIF5B Silent p.T842T 0.31 TCGA-BR-8372-01 2 100011328 100011329 AG - EIF5B Frame_Shift_Del p.K1080Tfs*5 0.20 TCGA-BR-8372-01 2 10560261 10560261 G T HPCAL1 Missense_Mutation p.Q126H 0.32 deleterious(0.02) possibly_damaging(0.457) TCGA-BR-8372-01 2 109374884 109374884 T C RANBP2 Silent p.L828L 0.05 TCGA-BR-8372-01 2 11053150 11053150 T C KCNF1 Missense_Mutation p.C200R 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8372-01 2 11053256 11053256 T C KCNF1 Missense_Mutation p.L235P 0.32 deleterious(0) possibly_damaging(0.765) TCGA-BR-8372-01 2 113942987 113942987 C T PSD4 Missense_Mutation p.P407S 0.24 tolerated_low_confidence(0.12) benign(0.018) TCGA-BR-8372-01 2 122520638 122520638 T C TSN Missense_Mutation p.V144A 0.20 deleterious(0) possibly_damaging(0.746) TCGA-BR-8372-01 2 128399701 128399701 C T LIMS2 Missense_Mutation p.V219I 0.21 tolerated(1) benign(0.004) TCGA-BR-8372-01 2 135738675 135738675 G T MAP3K19 Silent p.A1212A 0.28 TCGA-BR-8372-01 2 135988440 135988440 T - ZRANB3 Frame_Shift_Del p.R533Dfs*3 0.22 TCGA-BR-8372-01 2 149226442 149226443 - A MBD5 Frame_Shift_Ins p.P313Tfs*4 0.28 TCGA-BR-8372-01 2 154335041 154335041 G T RPRM Silent p.G13G 0.17 TCGA-BR-8372-01 2 157185013 157185013 A G NR4A2 Silent p.C299C 0.07 TCGA-BR-8372-01 2 158115854 158115854 G A GALNT5 Silent p.T420T 0.31 TCGA-BR-8372-01 2 158300559 158300559 A G CYTIP 5'UTR 0.23 TCGA-BR-8372-01 2 160027265 160027265 G A TANC1 Missense_Mutation p.G434R 0.24 deleterious(0) probably_damaging(1) TCGA-BR-8372-01 2 160139475 160139475 G T WDSUB1 Missense_Mutation p.L36M 0.33 deleterious(0.02) probably_damaging(0.918) TCGA-BR-8372-01 2 160243034 160243034 G A BAZ2B Nonsense_Mutation p.R1101* 0.25 TCGA-BR-8372-01 2 160714970 160714970 C T LY75-CD302 Nonsense_Mutation p.W762* 0.36 TCGA-BR-8372-01 2 160993972 160993972 C T ITGB6 Missense_Mutation p.V545M 0.35 tolerated(0.13) possibly_damaging(0.829) TCGA-BR-8372-01 2 162751204 162751204 G T SLC4A10 Missense_Mutation p.A404S 0.18 deleterious(0) probably_damaging(0.998) TCGA-BR-8372-01 2 1652625 1652625 T C PXDN Missense_Mutation p.H976R 0.36 tolerated(0.22) benign(0.049) TCGA-BR-8372-01 2 1670163 1670163 G A PXDN Missense_Mutation p.R372W 0.33 deleterious(0.02) possibly_damaging(0.846) TCGA-BR-8372-01 2 167144965 167144965 T - SCN9A Frame_Shift_Del p.E433Sfs*36 0.34 TCGA-BR-8372-01 2 167288839 167288839 C A SCN7A Missense_Mutation p.G861C 0.41 deleterious(0.05) possibly_damaging(0.866) TCGA-BR-8372-01 2 168726561 168726562 - T B3GALT1 3'UTR 0.35 TCGA-BR-8372-01 2 170493131 170493131 A G PPIG Missense_Mutation p.R455G 0.09 tolerated_low_confidence(0.07) unknown(0) TCGA-BR-8372-01 2 170806529 170806529 A - UBR3 Frame_Shift_Del p.V1169Sfs*85 0.09 TCGA-BR-8372-01 2 171073882 171073883 - C MYO3B Frame_Shift_Ins p.F196Vfs*6 0.11 TCGA-BR-8372-01 2 171258116 171258116 G A MYO3B Missense_Mutation p.A682T 0.27 deleterious(0) probably_damaging(0.996) TCGA-BR-8372-01 2 171700573 171700573 A G GAD1 Silent p.A219A 0.24 TCGA-BR-8372-01 2 172965365 172965365 G A DLX2 Missense_Mutation p.P298L 0.32 tolerated(0.11) probably_damaging(0.913) TCGA-BR-8372-01 2 175213713 175213713 T - CIR1 Frame_Shift_Del p.I289Yfs*51 0.36 TCGA-BR-8372-01 2 175622346 175622346 T - CHRNA1 Frame_Shift_Del p.I123Ffs*67 0.31 TCGA-BR-8372-01 2 176981596 176981597 - T HOXD10 Frame_Shift_Ins p.L14Ffs*12 0.28 TCGA-BR-8372-01 2 17896308 17896308 G A SMC6 Missense_Mutation p.P517L 0.27 deleterious(0) possibly_damaging(0.776) TCGA-BR-8372-01 2 179391736 179391736 C A TTN 3'UTR 0.35 TCGA-BR-8372-01 2 179398999 179398999 C A TTN Missense_Mutation p.G34115C 0.25 TCGA-BR-8372-01 2 179422693 179422693 T C TTN Missense_Mutation p.I29130V 0.37 TCGA-BR-8372-01 2 179424438 179424438 A G TTN Silent p.R28807R 0.34 TCGA-BR-8372-01 2 179569069 179569069 A G TTN Missense_Mutation p.C10010R 0.06 TCGA-BR-8372-01 2 180008501 180008501 G A SESTD1 Missense_Mutation p.R223C 0.33 deleterious(0) possibly_damaging(0.732) TCGA-BR-8372-01 2 182543540 182543540 G T NEUROD1 Silent p.P16P 0.12 TCGA-BR-8372-01 2 182786778 182786778 T - SSFA2 Frame_Shift_Del p.S1107Pfs*36 0.29 TCGA-BR-8372-01 2 183730945 183730945 G A FRZB Silent p.C112C 0.33 TCGA-BR-8372-01 2 187370510 187370512 ATG - ZC3H15 In_Frame_Del p.D306del 0.22 TCGA-BR-8372-01 2 190428721 190428721 A G SLC40A1 Missense_Mutation p.Y331H 0.43 deleterious(0) probably_damaging(0.999) TCGA-BR-8372-01 2 191301912 191301912 C A MFSD6 Missense_Mutation p.A386D 0.37 deleterious(0) probably_damaging(0.984) TCGA-BR-8372-01 2 191872290 191872290 T C STAT1 Missense_Mutation p.Q124R 0.30 deleterious(0) possibly_damaging(0.721) TCGA-BR-8372-01 2 192818525 192818525 T - TMEFF2 Frame_Shift_Del p.K303Rfs*19 0.37 TCGA-BR-8372-01 2 197021202 197021202 A G STK17B Missense_Mutation p.V99A 0.10 tolerated(0.08) possibly_damaging(0.603) TCGA-BR-8372-01 2 206165331 206165331 G A PARD3B Missense_Mutation p.A693T 0.31 deleterious(0.04) probably_damaging(0.918) TCGA-BR-8372-01 2 209195290 209195290 G A PIKFYVE Missense_Mutation p.V1279I 0.35 tolerated(0.09) possibly_damaging(0.898) TCGA-BR-8372-01 2 212251706 212251706 T C ERBB4 Missense_Mutation p.H1118R 0.26 tolerated(0.49) benign(0) TCGA-BR-8372-01 2 21233671 21233672 - G APOB Frame_Shift_Ins p.I2024Nfs*2 0.25 TCGA-BR-8372-01 2 213872632 213872632 C T IKZF2 Missense_Mutation p.A345T 0.25 tolerated(0.14) possibly_damaging(0.603) TCGA-BR-8372-01 2 215843156 215843156 T - ABCA12 Frame_Shift_Del p.N1671Ifs*4 0.31 TCGA-BR-8372-01 2 218762539 218762539 T C TNS1 Silent p.K50K 0.20 TCGA-BR-8372-01 2 219029127 219029127 T C CXCR1 Missense_Mutation p.T270A 0.35 tolerated(0.34) benign(0.02) TCGA-BR-8372-01 2 219411727 219411727 T C USP37 Missense_Mutation p.T173A 0.41 tolerated(0.16) benign(0.001) TCGA-BR-8372-01 2 219445338 219445338 A G RQCD1 Missense_Mutation p.N27D 0.26 tolerated(0.52) benign(0.056) TCGA-BR-8372-01 2 219508243 219508243 T C ZNF142 Missense_Mutation p.H999R 0.27 tolerated(0.43) benign(0.227) TCGA-BR-8372-01 2 220146725 220146725 C - DNAJB2 Frame_Shift_Del p.E100Rfs*101 0.20 TCGA-BR-8372-01 2 227660074 227660074 G A IRS1 Silent p.G1127G 0.35 TCGA-BR-8372-01 2 227920728 227920728 G A COL4A4 Silent p.P883P 0.36 TCGA-BR-8372-01 2 232091513 232091513 T C ARMC9 Splice_Site p.X208_splice 0.26 TCGA-BR-8372-01 2 232325259 232325259 T C NCL Silent p.A276A 0.34 TCGA-BR-8372-01 2 233199154 233199154 C T DIS3L2 Missense_Mutation p.A745V 0.21 tolerated(0.18) benign(0.177) TCGA-BR-8372-01 2 233244487 233244487 A C ALPP Silent p.G166G 0.23 TCGA-BR-8372-01 2 233599897 233599897 T G GIGYF2 5'UTR 0.28 TCGA-BR-8372-01 2 238249716 238249716 C T COL6A3 Missense_Mutation p.D2615N 0.39 unknown(0) TCGA-BR-8372-01 2 240033383 240033383 C T HDAC4 Missense_Mutation p.R601Q 0.33 tolerated(0.14) probably_damaging(0.949) TCGA-BR-8372-01 2 241468685 241468685 A - ANKMY1 Frame_Shift_Del p.F152Sfs*9 0.11 TCGA-BR-8372-01 2 241835242 241835242 A C C2orf54 Missense_Mutation p.I58S 0.31 deleterious(0) benign(0.026) TCGA-BR-8372-01 2 241969712 241969712 C T SNED1 Silent p.N75N 0.67 TCGA-BR-8372-01 2 26950859 26950859 G A KCNK3 Missense_Mutation p.G203D 0.43 deleterious(0) probably_damaging(1) TCGA-BR-8372-01 2 27458431 27458431 C T CAD Missense_Mutation p.R1333W 0.30 deleterious(0) probably_damaging(0.969) TCGA-BR-8372-01 2 27558811 27558811 T A GTF3C2 Silent p.A480A 0.29 TCGA-BR-8372-01 2 27805526 27805526 G - C2orf16 3'UTR 0.35 TCGA-BR-8372-01 2 28561526 28561526 G A BRE 3'UTR 0.32 TCGA-BR-8372-01 2 33952811 33952811 C - AC009499.1 Intron 0.31 TCGA-BR-8372-01 2 3502771 3502771 C T ADI1 Missense_Mutation p.R168H 0.27 deleterious(0) probably_damaging(0.989) TCGA-BR-8372-01 2 36583582 36583582 G A CRIM1 Silent p.R49R 0.37 TCGA-BR-8372-01 2 36970398 36970398 A C VIT Missense_Mutation p.S92R 0.09 tolerated(0.39) possibly_damaging(0.508) TCGA-BR-8372-01 2 37516634 37516634 T C PRKD3 Silent p.K194K 0.39 TCGA-BR-8372-01 2 38525369 38525369 T C ATL2 Missense_Mutation p.T517A 0.26 tolerated(0.16) benign(0.008) TCGA-BR-8372-01 2 42280472 42280472 C T PKDCC Silent p.L245L 0.36 TCGA-BR-8372-01 2 43970051 43970051 A G PLEKHH2 Missense_Mutation p.I1131M 0.30 deleterious(0.01) benign(0.004) TCGA-BR-8372-01 2 44457935 44457936 - T PPM1B 3'UTR 0.21 TCGA-BR-8372-01 2 45169340 45169340 G A SIX3 Missense_Mutation p.G33S 0.43 tolerated_low_confidence(0.22) unknown(0) TCGA-BR-8372-01 2 48035303 48035303 T C FBXO11 Missense_Mutation p.Y913C 0.33 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-BR-8372-01 2 50280668 50280668 C T NRXN1 Missense_Mutation p.G1330D 0.15 tolerated(0.21) benign(0.057) TCGA-BR-8372-01 2 51255157 51255157 G A NRXN1 Silent p.R85R 0.38 TCGA-BR-8372-01 2 55252719 55252719 A G RTN4 Missense_Mutation p.V839A 0.10 tolerated(0.9) benign(0.002) TCGA-BR-8372-01 2 60983631 60983631 G A PAPOLG Splice_Site p.X6_splice 0.41 TCGA-BR-8372-01 2 62110669 62110669 T C CCT4 Silent p.K65K 0.34 TCGA-BR-8372-01 2 64779519 64779519 T C AFTPH Missense_Mutation p.I304T 0.35 tolerated_low_confidence(0.25) benign(0.003) TCGA-BR-8372-01 2 69330022 69330022 A G ANTXR1 Missense_Mutation p.N251S 0.04 tolerated(0.34) possibly_damaging(0.871) TCGA-BR-8372-01 2 70475534 70475535 CA - TIA1 Splice_Site p.X9_splice 0.36 TCGA-BR-8372-01 2 7137136 7137136 T C RNF144A Missense_Mutation p.Y27H 0.17 tolerated(0.49) benign(0.375) TCGA-BR-8372-01 2 74043234 74043234 G A C2orf78 Missense_Mutation p.M628I 0.37 deleterious(0.01) benign(0.156) TCGA-BR-8372-01 2 79312224 79312224 C T REG1B 3'UTR 0.31 TCGA-BR-8372-01 2 80136836 80136836 G A CTNNA2 Silent p.T323T 0.36 TCGA-BR-8372-01 2 80529715 80529715 G A LRRTM1 Silent p.T410T 0.09 TCGA-BR-8372-01 2 85554313 85554313 T C TGOLN2 Missense_Mutation p.K181R 0.07 deleterious(0.03) probably_damaging(0.953) TCGA-BR-8372-01 2 90199096 90199096 G A IGKV1D-12 Missense_Mutation p.G86D 0.07 deleterious(0.01) probably_damaging(0.928) TCGA-BR-8372-01 2 95513778 95513778 A T RNU6-1320P 5'Flank 0.23 TCGA-BR-8372-01 2 97474358 97474358 G A CNNM4 Missense_Mutation p.R670H 0.26 deleterious(0.04) benign(0.017) TCGA-BR-8372-01 2 98340769 98340769 C - ZAP70 Frame_Shift_Del p.D92Tfs*77 0.38 TCGA-BR-8372-01 2 98411544 98411544 G A TMEM131 Missense_Mutation p.R1079W 0.30 deleterious(0) probably_damaging(0.999) TCGA-BR-8372-01 2 98429194 98429195 - G TMEM131 Frame_Shift_Ins p.K546Qfs*19 0.37 TCGA-BR-8372-01 2 99163123 99163123 A - INPP4A Frame_Shift_Del p.K378Sfs*24 0.12 TCGA-BR-8372-01 3 10084268 10084268 T C FANCD2 Missense_Mutation p.L270S 0.07 deleterious(0) probably_damaging(0.994) TCGA-BR-8372-01 3 101085608 101085608 T - SENP7 Frame_Shift_Del p.K328Nfs*49 0.22 TCGA-BR-8372-01 3 101399981 101399981 A G RPL24 Nonstop_Mutation p.*158Qext*7 0.18 TCGA-BR-8372-01 3 112730081 112730081 T - C3orf17 Frame_Shift_Del p.M242Cfs*3 0.25 TCGA-BR-8372-01 3 126733136 126733136 A G PLXNA1 Missense_Mutation p.H841R 0.44 tolerated(0.09) benign(0.049) TCGA-BR-8372-01 3 126741635 126741635 A G PLXNA1 Missense_Mutation p.T1446A 0.28 tolerated(0.31) benign(0.111) TCGA-BR-8372-01 3 127783899 127783899 C A SEC61A1 Intron 0.23 TCGA-BR-8372-01 3 128060202 128060203 - C EEFSEC Frame_Shift_Ins p.E307Rfs*36 0.22 TCGA-BR-8372-01 3 128979638 128979638 G A COPG1 Silent p.S372S 0.32 TCGA-BR-8372-01 3 129284282 129284282 C T PLXND1 Silent p.S1474S 0.24 TCGA-BR-8372-01 3 129547260 129547260 T A TMCC1 5'UTR 0.38 TCGA-BR-8372-01 3 133185682 133185682 A G BFSP2 Missense_Mutation p.E301G 0.26 tolerated(0.21) benign(0.031) TCGA-BR-8372-01 3 133191257 133191257 C T BFSP2 Silent p.G364G 0.29 TCGA-BR-8372-01 3 133524737 133524738 - G SRPRB Frame_Shift_Ins p.T18Hfs*57 0.24 TCGA-BR-8372-01 3 134960032 134960032 G A EPHB1 Missense_Mutation p.A797T 0.40 tolerated(0.07) possibly_damaging(0.726) TCGA-BR-8372-01 3 137787004 137787004 C - DZIP1L Frame_Shift_Del p.M610* 0.33 TCGA-BR-8372-01 3 138762997 138762997 C T PRR23C Missense_Mutation p.E156K 0.25 tolerated(0.14) possibly_damaging(0.535) TCGA-BR-8372-01 3 139236455 139236455 T C RBP1 3'UTR 0.09 TCGA-BR-8372-01 3 142840223 142840223 G A CHST2 Missense_Mutation p.E189K 0.32 deleterious(0.02) possibly_damaging(0.867) TCGA-BR-8372-01 3 150128353 150128353 G C TSC22D2 Missense_Mutation p.A406P 0.40 tolerated(0.21) possibly_damaging(0.787) TCGA-BR-8372-01 3 150263978 150263978 C A SERP1 5'UTR 0.17 TCGA-BR-8372-01 3 151012788 151012788 G A GPR87 Silent p.N82N 0.75 TCGA-BR-8372-01 3 151150579 151150579 C A MED12L Missense_Mutation p.P2142H 0.09 deleterious_low_confidence(0) benign(0.358) TCGA-BR-8372-01 3 151166172 151166172 T - IGSF10 Frame_Shift_Del p.S533Vfs*20 0.28 TCGA-BR-8372-01 3 15283047 15283047 G - CAPN7 Frame_Shift_Del p.G582Vfs*12 0.24 TCGA-BR-8372-01 3 155545988 155545988 T C SLC33A1 3'UTR 0.28 TCGA-BR-8372-01 3 157815997 157815997 G A SHOX2 Missense_Mutation p.A296V 0.35 deleterious(0) probably_damaging(0.978) TCGA-BR-8372-01 3 160395474 160395474 A - ARL14 Frame_Shift_Del p.N115Mfs*7 0.21 TCGA-BR-8372-01 3 16638359 16638359 A G DAZL Silent p.N152N 0.32 TCGA-BR-8372-01 3 167507159 167507159 A - SERPINI1 Frame_Shift_Del p.N83Mfs*8 0.22 TCGA-BR-8372-01 3 169486060 169486060 T A ACTRT3 Silent p.L93L 0.07 TCGA-BR-8372-01 3 169998164 169998165 - A PRKCI Frame_Shift_Ins p.E288Rfs*4 0.25 TCGA-BR-8372-01 3 183665113 183665113 T C ABCC5 Missense_Mutation p.Q1138R 0.42 deleterious(0.01) possibly_damaging(0.903) TCGA-BR-8372-01 3 185434390 185434390 T C C3orf65 Missense_Mutation p.Y75H 0.37 tolerated_low_confidence(0.24) benign(0.003) TCGA-BR-8372-01 3 186953416 186953416 C T MASP1 3'UTR 0.32 TCGA-BR-8372-01 3 192516463 192516463 G A MB21D2 Silent p.H396H 0.21 TCGA-BR-8372-01 3 194158117 194158117 A G ATP13A3 Missense_Mutation p.V641A 0.29 tolerated(0.88) benign(0.004) TCGA-BR-8372-01 3 195594422 195594422 G A TNK2 Missense_Mutation p.A979V 0.33 tolerated_low_confidence(0.39) benign(0.06) TCGA-BR-8372-01 3 196613205 196613205 A G SENP5 Missense_Mutation p.M385V 0.42 tolerated(0.83) benign(0) TCGA-BR-8372-01 3 21467097 21467097 C T ZNF385D Missense_Mutation p.A247T 0.32 tolerated(0.15) benign(0.006) TCGA-BR-8372-01 3 25470119 25470119 A - RARB 5'UTR 0.28 TCGA-BR-8372-01 3 27427494 27427494 C T SLC4A7 Silent p.V1118V 0.35 TCGA-BR-8372-01 3 31774766 31774766 A C OSBPL10 Missense_Mutation p.S360A 0.36 tolerated(0.87) benign(0.011) TCGA-BR-8372-01 3 3188232 3188232 A - TRNT1 Frame_Shift_Del p.I245Ffs*7 0.32 TCGA-BR-8372-01 3 37567542 37567542 C T ITGA9 Silent p.S451S 0.24 TCGA-BR-8372-01 3 38740025 38740025 T C SCN10A Silent p.S1562S 0.05 TCGA-BR-8372-01 3 38966983 38966983 G A SCN11A Missense_Mutation p.P212L 0.30 tolerated(0.25) benign(0.009) TCGA-BR-8372-01 3 44943294 44943294 C T TGM4 Missense_Mutation p.A281V 0.25 deleterious(0.01) probably_damaging(0.939) TCGA-BR-8372-01 3 45554625 45554625 A C LARS2 Splice_Site p.X587_splice 0.31 TCGA-BR-8372-01 3 46560368 46560368 T - LRRC2 3'UTR 0.33 TCGA-BR-8372-01 3 47098830 47098830 T C SETD2 Silent p.S2148S 0.10 TCGA-BR-8372-01 3 47454481 47454482 - T PTPN23 Frame_Shift_Ins p.P1573Lfs*32 0.24 TCGA-BR-8372-01 3 47716999 47716999 C T SMARCC1 Missense_Mutation p.R602H 0.35 deleterious(0.04) possibly_damaging(0.679) TCGA-BR-8372-01 3 47887826 47887826 C T DHX30 Missense_Mutation p.R422W 0.36 deleterious(0) benign(0.394) TCGA-BR-8372-01 3 48501288 48501288 C - ATRIP Frame_Shift_Del p.L345Cfs*31 0.25 TCGA-BR-8372-01 3 48694142 48694142 G A CELSR3 Missense_Mutation p.P1463L 0.38 deleterious(0.05) benign(0.428) TCGA-BR-8372-01 3 49042356 49042356 T C P4HTM Missense_Mutation p.V317A 0.38 tolerated(0.06) benign(0.142) TCGA-BR-8372-01 3 49042445 49042445 G A P4HTM Missense_Mutation p.A347T 0.40 tolerated(0.13) possibly_damaging(0.879) TCGA-BR-8372-01 3 49547944 49547944 G A DAG1 5'UTR 0.28 TCGA-BR-8372-01 3 49724649 49724649 A G MST1 Silent p.G180G 0.25 TCGA-BR-8372-01 3 49842023 49842023 C - FAM212A Frame_Shift_Del p.P157Qfs*21 0.27 TCGA-BR-8372-01 3 49846865 49846865 A G UBA7 Silent p.G707G 0.36 TCGA-BR-8372-01 3 50330366 50330366 C A HYAL3 3'UTR 0.21 TCGA-BR-8372-01 3 50368024 50368024 G A RASSF1 Silent p.C341C 0.08 TCGA-BR-8372-01 3 51417604 51417604 C - DOCK3 Frame_Shift_Del p.P1852Qfs*45 0.31 TCGA-BR-8372-01 3 51978458 51978458 A G PARP3 Missense_Mutation p.K129R 0.27 tolerated(0.24) benign(0.033) TCGA-BR-8372-01 3 52433185 52433185 A G DNAH1 Missense_Mutation p.I4137V 0.38 benign(0.1) TCGA-BR-8372-01 3 5244703 5244703 C T EDEM1 Missense_Mutation p.A304V 0.39 deleterious(0) probably_damaging(0.991) TCGA-BR-8372-01 3 52546401 52546401 C - STAB1 Frame_Shift_Del p.P978Lfs*57 0.34 TCGA-BR-8372-01 3 52561640 52561640 G A NT5DC2 Missense_Mutation p.R344W 0.39 deleterious(0.03) benign(0.007) TCGA-BR-8372-01 3 52821991 52821993 CCT - ITIH1 Intron 0.37 TCGA-BR-8372-01 3 53145912 53145912 A C RFT1 Missense_Mutation p.W237G 0.22 tolerated(0.32) possibly_damaging(0.698) TCGA-BR-8372-01 3 55768913 55768913 T - ERC2 Frame_Shift_Del p.D867Mfs*31 0.29 TCGA-BR-8372-01 3 56657046 56657046 A - FAM208A 3'UTR 0.32 TCGA-BR-8372-01 3 57294708 57294708 T - APPL1 Frame_Shift_Del p.F584Lfs*42 0.24 TCGA-BR-8372-01 3 66467669 66467669 G A LRIG1 Silent p.S129S 0.37 TCGA-BR-8372-01 3 78766489 78766489 C T ROBO1 Missense_Mutation p.A285T 0.39 deleterious(0.01) probably_damaging(0.996) TCGA-BR-8372-01 3 87325644 87325644 C T POU1F1 5'UTR 0.23 TCGA-BR-8372-01 3 8775517 8775517 G A CAV3 5'UTR 0.59 TCGA-BR-8372-01 3 89499363 89499363 C - EPHA3 Frame_Shift_Del p.M847Wfs*10 0.20 TCGA-BR-8372-01 3 9547804 9547804 C T LHFPL4 Missense_Mutation p.G164R 0.28 tolerated(0.13) possibly_damaging(0.691) TCGA-BR-8372-01 3 99568802 99568802 G A FILIP1L Missense_Mutation p.A573V 0.34 tolerated(0.28) benign(0.013) TCGA-BR-8372-01 3 99569758 99569758 G T FILIP1L Silent p.T254T 0.21 TCGA-BR-8372-01 4 100540226 100540226 T C MTTP Silent p.Y771Y 0.32 TCGA-BR-8372-01 4 1018157 1018157 C T FGFRL1 Silent p.D259D 0.07 TCGA-BR-8372-01 4 106157730 106157732 TCT - TET2 In_Frame_Del p.L879del 0.41 TCGA-BR-8372-01 4 106345393 106345393 A T PPA2 Silent p.I205I 0.07 TCGA-BR-8372-01 4 106345398 106345398 A T PPA2 Missense_Mutation p.L204I 0.07 tolerated(0.75) benign(0.058) TCGA-BR-8372-01 4 110448544 110448544 C T SEC24B Missense_Mutation p.A1011V 0.27 deleterious(0.03) benign(0.415) TCGA-BR-8372-01 4 110460897 110460897 G A SEC24B 3'UTR 0.69 TCGA-BR-8372-01 4 110915959 110915959 T C EGF Silent p.C976C 0.26 TCGA-BR-8372-01 4 113570754 113570754 A - LARP7 Frame_Shift_Del p.T412Qfs*5 0.41 TCGA-BR-8372-01 4 114254212 114254212 C A ANK2 Missense_Mutation p.P1076H 0.32 probably_damaging(1) TCGA-BR-8372-01 4 115597177 115597177 T C UGT8 Silent p.R453R 0.09 TCGA-BR-8372-01 4 121843735 121843735 A G PRDM5 Missense_Mutation p.F10S 0.23 deleterious(0) probably_damaging(0.991) TCGA-BR-8372-01 4 123664360 123664360 A G BBS12 Missense_Mutation p.N438S 0.11 tolerated(0.96) benign(0.008) TCGA-BR-8372-01 4 128651656 128651656 A G SLC25A31 5'UTR 0.20 TCGA-BR-8372-01 4 1316173 1316173 T C MAEA Missense_Mutation p.L154P 0.38 deleterious(0) probably_damaging(0.99) TCGA-BR-8372-01 4 138452697 138452697 A - PCDH18 Frame_Shift_Del p.F182Lfs*18 0.31 TCGA-BR-8372-01 4 145061904 145061904 C T GYPA 5'UTR 0.26 TCGA-BR-8372-01 4 145567779 145567779 C A HHIP 5'UTR 0.15 TCGA-BR-8372-01 4 146048779 146048779 T - ABCE1 3'UTR 0.27 TCGA-BR-8372-01 4 148538956 148538956 G A TMEM184C 5'UTR 0.45 TCGA-BR-8372-01 4 151504409 151504409 G T MAB21L2 Silent p.V76V 0.35 TCGA-BR-8372-01 4 153249385 153249385 G A FBXW7 Missense_Mutation p.R465C 0.29 deleterious(0) probably_damaging(1) TCGA-BR-8372-01 4 153896474 153896474 A C FHDC1 Silent p.T677T 0.26 TCGA-BR-8372-01 4 154216859 154216859 C T TRIM2 Missense_Mutation p.A394V 0.40 tolerated(0.18) possibly_damaging(0.483) TCGA-BR-8372-01 4 15642491 15642491 A G FBXL5 Silent p.L106L 0.34 TCGA-BR-8372-01 4 156643352 156643352 T C GUCY1A3 Intron 0.07 TCGA-BR-8372-01 4 157688944 157688944 A G PDGFC Missense_Mutation p.V301A 0.36 deleterious(0.04) possibly_damaging(0.814) TCGA-BR-8372-01 4 159092074 159092074 G A FAM198B Missense_Mutation p.P152S 0.37 tolerated(0.39) benign(0.003) TCGA-BR-8372-01 4 159644495 159644495 G T PPID 5'UTR 0.38 TCGA-BR-8372-01 4 164271917 164271917 G A NPY5R Nonsense_Mutation p.W164* 0.30 TCGA-BR-8372-01 4 167022027 167022027 A G TLL1 Silent p.%3D 0.28 TCGA-BR-8372-01 4 183710387 183710387 C T TENM3 Silent p.L1816L 0.26 TCGA-BR-8372-01 4 183721042 183721042 G A TENM3 Silent p.T2546T 0.40 TCGA-BR-8372-01 4 184614279 184614279 T C TRAPPC11 Missense_Mutation p.I739T 0.39 deleterious(0.01) benign(0.003) TCGA-BR-8372-01 4 184930544 184930545 TG - STOX2 Frame_Shift_Del p.V186Qfs*52 0.17 TCGA-BR-8372-01 4 185552304 185552304 C T CASP3 Missense_Mutation p.R164H 0.33 deleterious(0) benign(0.401) TCGA-BR-8372-01 4 186508746 186508746 T C SORBS2 3'UTR 0.12 TCGA-BR-8372-01 4 186544439 186544439 T - SORBS2 Frame_Shift_Del p.N811Ifs*65 0.35 TCGA-BR-8372-01 4 186545480 186545480 T - SORBS2 Frame_Shift_Del p.N464Tfs*25 0.30 TCGA-BR-8372-01 4 187131879 187131879 T C CYP4V2 3'UTR 0.33 TCGA-BR-8372-01 4 1932443 1932443 C T WHSC1 Missense_Mutation p.R501C 0.07 deleterious(0) probably_damaging(0.985) TCGA-BR-8372-01 4 2178053 2178053 A G POLN Silent p.N396N 0.25 TCGA-BR-8372-01 4 22389286 22389286 A G GPR125 3'UTR 0.39 TCGA-BR-8372-01 4 2242749 2242749 A - HAUS3 5'UTR 0.23 TCGA-BR-8372-01 4 26483534 26483534 T C CCKAR Missense_Mutation p.Y338C 0.35 deleterious(0) possibly_damaging(0.823) TCGA-BR-8372-01 4 26487447 26487447 G A CCKAR Silent p.P146P 0.33 TCGA-BR-8372-01 4 2822459 2822459 A G SH3BP2 Missense_Mutation p.T96A 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8372-01 4 3219640 3219640 C T HTT Silent p.R2401R 0.12 TCGA-BR-8372-01 4 3417718 3417718 C T RGS12 Missense_Mutation p.A766V 0.50 deleterious(0) benign(0.147) TCGA-BR-8372-01 4 38022259 38022259 C T TBC1D1 Silent p.S340S 0.31 TCGA-BR-8372-01 4 39450263 39450263 T C KLB Missense_Mutation p.L1031S 0.23 deleterious_low_confidence(0.04) benign(0.01) TCGA-BR-8372-01 4 41984520 41984520 T C DCAF4L1 Silent p.P237P 0.30 TCGA-BR-8372-01 4 4285410 4285410 C A LYAR Missense_Mutation p.K20N 0.51 tolerated(0.12) benign(0.436) TCGA-BR-8372-01 4 48038331 48038331 T - NIPAL1 3'UTR 0.57 TCGA-BR-8372-01 4 48169970 48169970 G A TEC Nonsense_Mutation p.R166* 0.34 TCGA-BR-8372-01 4 5500846 5500846 G T STK32B 3'UTR 0.17 TCGA-BR-8372-01 4 5746947 5746947 A - EVC Frame_Shift_Del p.K274Rfs*37 0.29 TCGA-BR-8372-01 4 57796314 57796315 - A REST Frame_Shift_Ins p.R433Tfs*4 0.26 TCGA-BR-8372-01 4 57871589 57871589 A - POLR2B Frame_Shift_Del p.A362Pfs*21 0.27 TCGA-BR-8372-01 4 66230798 66230798 C T EPHA5 Missense_Mutation p.A725T 0.15 deleterious(0) benign(0.177) TCGA-BR-8372-01 4 74347531 74347532 - T AFM Frame_Shift_Ins p.L16Ffs*3 0.36 TCGA-BR-8372-01 4 75937954 75937954 G A PARM1 Silent p.T121T 0.32 TCGA-BR-8372-01 4 76891521 76891521 T - SDAD1 Frame_Shift_Del p.K275Rfs*15 0.24 TCGA-BR-8372-01 4 77675534 77675534 G A SHROOM3 Missense_Mutation p.G1300S 0.17 tolerated(0.47) benign(0.01) TCGA-BR-8372-01 4 7844918 7844918 C T AFAP1 Missense_Mutation p.R165Q 0.27 deleterious(0.01) probably_damaging(0.98) TCGA-BR-8372-01 4 8037891 8037891 C T ABLIM2 Silent p.R344R 0.13 TCGA-BR-8372-01 4 8098904 8098904 T C ABLIM2 Missense_Mutation p.D87G 0.31 tolerated(1) possibly_damaging(0.528) TCGA-BR-8372-01 4 8229582 8229582 T C SH3TC1 Missense_Mutation p.C721R 0.08 deleterious(0.02) probably_damaging(1) TCGA-BR-8372-01 4 84026148 84026148 C T PLAC8 Silent p.P48P 0.23 TCGA-BR-8372-01 4 85750185 85750185 A G WDFY3 Missense_Mutation p.Y310H 0.31 deleterious(0) probably_damaging(1) TCGA-BR-8372-01 4 8588806 8588806 A G GPR78 Missense_Mutation p.T270A 0.33 tolerated(0.69) benign(0.356) TCGA-BR-8372-01 4 88766641 88766641 A G MEPE Silent p.P207P 0.09 TCGA-BR-8372-01 4 89415439 89415439 C T HERC5 Missense_Mutation p.P801S 0.13 deleterious(0) probably_damaging(0.999) TCGA-BR-8372-01 4 94693552 94693552 G T GRID2 Missense_Mutation p.R976M 0.31 deleterious_low_confidence(0) probably_damaging(0.947) TCGA-BR-8372-01 4 95508224 95508224 C T PDLIM5 Intron 0.14 TCGA-BR-8372-01 4 96762545 96762545 A C PDHA2 3'UTR 0.47 TCGA-BR-8372-01 4 985400 985400 A G SLC26A1 Missense_Mutation p.L31P 0.25 deleterious(0.01) possibly_damaging(0.871) TCGA-BR-8372-01 5 112824010 112824010 G A MCC Silent p.T34T 0.45 TCGA-BR-8372-01 5 118176609 118176609 G - DTWD2 3'UTR 0.16 TCGA-BR-8372-01 5 1212549 1212549 T C SLC6A19 Missense_Mutation p.W205R 0.39 deleterious(0.02) benign(0.25) TCGA-BR-8372-01 5 123984684 123984684 C - ZNF608 Frame_Shift_Del p.A465Pfs*46 0.32 TCGA-BR-8372-01 5 125819169 125819169 A T GRAMD3 Missense_Mutation p.E265D 0.30 tolerated(1) benign(0.023) TCGA-BR-8372-01 5 125821457 125821457 T C GRAMD3 Silent p.Y365Y 0.46 TCGA-BR-8372-01 5 126783248 126783248 G T MEGF10 Splice_Site p.X910_splice 0.37 TCGA-BR-8372-01 5 129243911 129243911 T C CHSY3 Missense_Mutation p.M315T 0.40 deleterious(0.01) possibly_damaging(0.573) TCGA-BR-8372-01 5 130970726 130970726 C A RAPGEF6 5'UTR 0.19 TCGA-BR-8372-01 5 132096635 132096635 C T SEPT8 Missense_Mutation p.R382H 0.40 deleterious(0.03) possibly_damaging(0.617) TCGA-BR-8372-01 5 133996998 133996998 T C SEC24A Missense_Mutation p.V96A 0.29 tolerated_low_confidence(1) benign(0.001) TCGA-BR-8372-01 5 135382977 135382977 C T TGFBI Silent p.N213N 0.06 TCGA-BR-8372-01 5 137451297 137451297 T - NME5 3'UTR 0.29 TCGA-BR-8372-01 5 137537824 137537824 G A CDC23 Silent p.D131D 0.44 TCGA-BR-8372-01 5 137610052 137610052 A G GFRA3 Missense_Mutation p.L21P 0.30 tolerated(0.09) unknown(0) TCGA-BR-8372-01 5 138118937 138118937 T C CTNNA1 Silent p.H59H 0.33 TCGA-BR-8372-01 5 138209437 138209437 T C LRRTM2 Silent p.T271T 0.32 TCGA-BR-8372-01 5 138643018 138643018 T C MATR3 5'UTR 0.15 TCGA-BR-8372-01 5 13871670 13871670 A G DNAH5 Intron 0.18 TCGA-BR-8372-01 5 139742537 139742537 A T SLC4A9 Missense_Mutation p.D307V 0.19 deleterious(0.01) possibly_damaging(0.517) TCGA-BR-8372-01 5 139893056 139893056 C A ANKHD1 Missense_Mutation p.L1437M 0.19 possibly_damaging(0.665) TCGA-BR-8372-01 5 140012551 140012551 G C CD14 Missense_Mutation p.C6W 0.31 deleterious(0.03) possibly_damaging(0.546) TCGA-BR-8372-01 5 140044509 140044509 T C WDR55 Silent p.T4T 0.23 TCGA-BR-8372-01 5 140188560 140188560 G A PCDHA4 Silent p.A596A 0.31 TCGA-BR-8372-01 5 140221266 140221266 C T PCDHA8 Silent p.D120D 0.30 TCGA-BR-8372-01 5 140221296 140221296 G A PCDHA8 Silent p.P130P 0.09 TCGA-BR-8372-01 5 140222880 140222880 G A PCDHA8 Silent p.A658A 0.26 TCGA-BR-8372-01 5 140481379 140481379 G A PCDHB3 Missense_Mutation p.M382I 0.18 tolerated_low_confidence(0.54) benign(0) TCGA-BR-8372-01 5 140515740 140515740 T - PCDHB5 Frame_Shift_Del p.L243Yfs*18 0.29 TCGA-BR-8372-01 5 140516594 140516594 C T PCDHB5 Silent p.F526F 0.35 TCGA-BR-8372-01 5 140581012 140581012 C T PCDHB11 Silent p.N555N 0.27 TCGA-BR-8372-01 5 140581656 140581656 T C PCDHB11 Missense_Mutation p.V770A 0.13 deleterious_low_confidence(0.04) benign(0.003) TCGA-BR-8372-01 5 140768044 140768044 C T PCDHGB4 Missense_Mutation p.T198I 0.23 deleterious(0.01) benign(0.222) TCGA-BR-8372-01 5 140768489 140768489 A G PCDHGB4 Missense_Mutation p.I346M 0.07 tolerated(0.05) benign(0.064) TCGA-BR-8372-01 5 140812079 140812079 G A PCDHGA12 Missense_Mutation p.G585S 0.35 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-BR-8372-01 5 145246164 145246164 T G GRXCR2 Missense_Mutation p.E155A 0.34 tolerated(0.89) benign(0.014) TCGA-BR-8372-01 5 145246209 145246209 T C GRXCR2 Missense_Mutation p.D140G 0.23 tolerated(0.11) possibly_damaging(0.897) TCGA-BR-8372-01 5 145838519 145838519 T C TCERG1 Missense_Mutation p.S171P 0.33 tolerated(0.07) possibly_damaging(0.693) TCGA-BR-8372-01 5 1463936 1463936 A G LPCAT1 Missense_Mutation p.F479L 0.30 deleterious(0.03) benign(0.075) TCGA-BR-8372-01 5 148206692 148206692 A G ADRB2 Missense_Mutation p.T100A 0.34 tolerated(0.98) benign(0.002) TCGA-BR-8372-01 5 148754068 148754068 C T IL17B Missense_Mutation p.R136H 0.21 deleterious(0.03) probably_damaging(0.998) TCGA-BR-8372-01 5 149900850 149900850 C T NDST1 Missense_Mutation p.R12W 0.23 deleterious_low_confidence(0) benign(0.004) TCGA-BR-8372-01 5 150029322 150029322 C T SYNPO Silent p.V739V 0.28 TCGA-BR-8372-01 5 150867571 150867571 T C SLC36A1 Missense_Mutation p.L396P 0.33 deleterious(0) probably_damaging(1) TCGA-BR-8372-01 5 150945734 150945734 T C FAT2 Missense_Mutation p.D920G 0.35 probably_damaging(0.999) TCGA-BR-8372-01 5 151042974 151042974 T C SPARC 3'UTR 0.42 TCGA-BR-8372-01 5 154394309 154394309 T C KIF4B Missense_Mutation p.L297P 0.30 deleterious(0) probably_damaging(1) TCGA-BR-8372-01 5 156918635 156918635 T C ADAM19 Missense_Mutation p.M695V 0.31 tolerated(1) benign(0.004) TCGA-BR-8372-01 5 157078216 157078216 G T SOX30 Missense_Mutation p.L291M 0.30 deleterious(0.02) probably_damaging(0.959) TCGA-BR-8372-01 5 158634985 158634985 A G RNF145 Intron 0.32 TCGA-BR-8372-01 5 167887732 167887732 C T WWC1 Silent p.S967S 0.37 TCGA-BR-8372-01 5 169141166 169141166 T C DOCK2 Silent p.D598D 0.24 TCGA-BR-8372-01 5 169435557 169435557 G A DOCK2 Silent p.Q1043Q 0.07 TCGA-BR-8372-01 5 169533111 169533111 G - FOXI1 Frame_Shift_Del p.G52Afs*19 0.39 TCGA-BR-8372-01 5 169679461 169679461 C T LCP2 Missense_Mutation p.A434T 0.14 tolerated(0.14) possibly_damaging(0.866) TCGA-BR-8372-01 5 170827872 170827872 A G NPM1 Silent p.A204A 0.22 TCGA-BR-8372-01 5 172660103 172660103 C T NKX2-5 Silent p.A148A 0.33 TCGA-BR-8372-01 5 173317507 173317507 T C CPEB4 Silent p.H257H 0.19 TCGA-BR-8372-01 5 176931771 176931771 G T DOK3 Missense_Mutation p.H262Q 0.36 tolerated(0.2) possibly_damaging(0.606) TCGA-BR-8372-01 5 177651531 177651531 C T PHYKPL Missense_Mutation p.R179Q 0.35 deleterious(0.03) benign(0.167) TCGA-BR-8372-01 5 21459663 21459663 C T GUSBP1 5'Flank 0.36 TCGA-BR-8372-01 5 24487830 24487830 G C CDH10 Missense_Mutation p.P770R 0.33 deleterious(0) probably_damaging(0.997) TCGA-BR-8372-01 5 24492959 24492959 C T CDH10 Missense_Mutation p.V531I 0.24 tolerated(0.21) benign(0.14) TCGA-BR-8372-01 5 2748625 2748625 G A IRX2 Silent p.N399N 0.38 TCGA-BR-8372-01 5 31313439 31313439 G A CDH6 Missense_Mutation p.R423Q 0.28 tolerated(0.13) probably_damaging(0.992) TCGA-BR-8372-01 5 31534463 31534463 G T C5orf22 Missense_Mutation p.D56Y 0.32 deleterious(0) probably_damaging(0.998) TCGA-BR-8372-01 5 32789460 32789461 - T NPR3 3'UTR 0.26 TCGA-BR-8372-01 5 33881309 33881309 G A ADAMTS12 Missense_Mutation p.S135F 0.29 deleterious(0.01) possibly_damaging(0.646) TCGA-BR-8372-01 5 34823885 34823885 C T RAI14 Silent p.S649S 0.31 TCGA-BR-8372-01 5 35867541 35867541 A - IL7R Frame_Shift_Del p.I121* 0.21 TCGA-BR-8372-01 5 37027460 37027460 G T NIPBL Splice_Site p.X1937_splice 0.35 TCGA-BR-8372-01 5 37167150 37167150 T - C5orf42 Frame_Shift_Del p.R2467Gfs*18 0.20 TCGA-BR-8372-01 5 37309266 37309266 A G NUP155 Missense_Mutation p.V911A 0.35 tolerated(0.05) benign(0.217) TCGA-BR-8372-01 5 39289038 39289039 TA - C9 Nonsense_Mutation p.Y477* 0.31 TCGA-BR-8372-01 5 39376883 39376883 C T DAB2 Missense_Mutation p.R669Q 0.33 deleterious(0) probably_damaging(0.999) TCGA-BR-8372-01 5 43653189 43653189 C T NNT Missense_Mutation p.R645C 0.37 deleterious(0) probably_damaging(0.984) TCGA-BR-8372-01 5 65374370 65374370 A - ERBB2IP 3'UTR 0.27 TCGA-BR-8372-01 5 72424344 72424344 T A TMEM171 Missense_Mutation p.S256R 0.08 deleterious(0.03) probably_damaging(0.999) TCGA-BR-8372-01 5 74028896 74028896 T C GFM2 Missense_Mutation p.Q513R 0.08 deleterious(0.03) possibly_damaging(0.611) TCGA-BR-8372-01 5 74712780 74712780 G A COL4A3BP Missense_Mutation p.A381V 0.38 tolerated(0.05) probably_damaging(0.966) TCGA-BR-8372-01 5 75954396 75954396 A G IQGAP2 Silent p.V811V 0.25 TCGA-BR-8372-01 5 78938656 78938657 - T PAPD4 Frame_Shift_Ins p.Q228Sfs*7 0.26 TCGA-BR-8372-01 5 79034641 79034641 T C CMYA5 Silent p.R3351R 0.44 TCGA-BR-8372-01 5 89949699 89949699 C A GPR98 Silent p.I1436I 0.42 TCGA-BR-8372-01 5 9154802 9154802 C T SEMA5A Missense_Mutation p.G427R 0.33 deleterious(0) probably_damaging(1) TCGA-BR-8372-01 6 102074414 102074414 G A GRIK2 Missense_Mutation p.S148N 0.33 tolerated(1) benign(0.003) TCGA-BR-8372-01 6 107361107 107361107 C T C6orf203 Missense_Mutation p.T53I 0.26 tolerated(0.32) possibly_damaging(0.651) TCGA-BR-8372-01 6 108616409 108616409 G T LACE1 Missense_Mutation p.K42N 0.31 tolerated_low_confidence(0.1) benign(0) TCGA-BR-8372-01 6 109850222 109850222 T - AK9 Frame_Shift_Del p.R1209Gfs*39 0.22 TCGA-BR-8372-01 6 109863251 109863251 G A AK9 Missense_Mutation p.R1117C 0.21 tolerated(0.13) benign(0.049) TCGA-BR-8372-01 6 110746270 110746270 C T SLC22A16 Missense_Mutation p.A514T 0.36 tolerated(0.05) probably_damaging(0.964) TCGA-BR-8372-01 6 111688943 111688943 G A REV3L Silent p.Y2016Y 0.36 TCGA-BR-8372-01 6 11193914 11193914 G A NEDD9 Silent p.P157P 0.36 TCGA-BR-8372-01 6 117240336 117240336 G A RFX6 Nonsense_Mutation p.W353* 0.26 TCGA-BR-8372-01 6 12015849 12015849 T C HIVEP1 5'UTR 0.08 TCGA-BR-8372-01 6 121625975 121625975 C T TBC1D32 Missense_Mutation p.R232Q 0.31 tolerated(0.1) possibly_damaging(0.657) TCGA-BR-8372-01 6 127771252 127771252 T - KIAA0408 Frame_Shift_Del p.K127Nfs*4 0.24 TCGA-BR-8372-01 6 136599301 136599301 A G BCLAF1 Missense_Mutation p.S240P 0.20 tolerated_low_confidence(0.17) possibly_damaging(0.504) TCGA-BR-8372-01 6 138640990 138640990 A C KIAA1244 Missense_Mutation p.E1542A 0.31 deleterious(0.01) probably_damaging(0.996) TCGA-BR-8372-01 6 146350787 146350787 T C GRM1 Missense_Mutation p.V45A 0.37 deleterious(0) benign(0.194) TCGA-BR-8372-01 6 146625839 146625839 G T GRM1 Missense_Mutation p.R348M 0.37 tolerated(0.12) benign(0.026) TCGA-BR-8372-01 6 146755301 146755301 C T GRM1 Missense_Mutation p.A985V 0.32 tolerated_low_confidence(0.18) benign(0.001) TCGA-BR-8372-01 6 146755495 146755495 G A GRM1 Missense_Mutation p.A1050T 0.39 tolerated_low_confidence(0.26) benign(0.003) TCGA-BR-8372-01 6 148848672 148848672 A G SASH1 Silent p.S456S 0.37 TCGA-BR-8372-01 6 150048223 150048223 A G NUP43 Missense_Mutation p.I342T 0.35 tolerated(0.36) benign(0.021) TCGA-BR-8372-01 6 16145267 16145267 T C MYLIP Missense_Mutation p.Y323H 0.36 tolerated(0.1) probably_damaging(0.999) TCGA-BR-8372-01 6 166572000 166572000 G T T Missense_Mutation p.L371M 0.35 tolerated(0.09) benign(0.094) TCGA-BR-8372-01 6 166778930 166778930 G A MPC1 Missense_Mutation p.T106M 0.42 tolerated(0.09) possibly_damaging(0.505) TCGA-BR-8372-01 6 166831826 166831826 T C RPS6KA2 Missense_Mutation p.T617A 0.11 tolerated(0.12) benign(0.018) TCGA-BR-8372-01 6 167587432 167587432 C T TCP10L2 Silent p.H112H 0.30 TCGA-BR-8372-01 6 170104148 170104148 G - PHF10 Frame_Shift_Del p.P483Qfs*? 0.30 TCGA-BR-8372-01 6 17837127 17837128 CT - KIF13A Frame_Shift_Del p.E379Afs*12 0.31 TCGA-BR-8372-01 6 18264728 18264728 C T DEK 5'UTR 0.56 TCGA-BR-8372-01 6 26093138 26093138 C T HFE Missense_Mutation p.T281M 0.25 deleterious(0) probably_damaging(0.97) TCGA-BR-8372-01 6 26156700 26156700 G T HIST1H1E Missense_Mutation p.A28S 0.29 tolerated(0.75) benign(0.137) TCGA-BR-8372-01 6 26184252 26184252 G A HIST1H2BE Missense_Mutation p.E77K 0.36 deleterious_low_confidence(0.04) possibly_damaging(0.849) TCGA-BR-8372-01 6 26205129 26205129 A G HIST1H4E Missense_Mutation p.D86G 0.21 deleterious(0) probably_damaging(0.928) TCGA-BR-8372-01 6 26406328 26406328 T C BTN3A1 Missense_Mutation p.Y93H 0.15 deleterious(0) probably_damaging(0.997) TCGA-BR-8372-01 6 26598802 26598802 C A ABT1 Missense_Mutation p.L250M 0.28 deleterious(0) probably_damaging(1) TCGA-BR-8372-01 6 27100151 27100151 A G HIST1H2BJ Nonstop_Mutation p.*127Qext*31 0.40 TCGA-BR-8372-01 6 28254890 28254890 A - PGBD1 Frame_Shift_Del p.N198Tfs*7 0.34 TCGA-BR-8372-01 6 28541255 28541255 C A SCAND3 Missense_Mutation p.S804I 0.37 tolerated(0.14) benign(0.001) TCGA-BR-8372-01 6 29394884 29394884 A - OR11A1 Frame_Shift_Del p.Y179Tfs*20 0.29 TCGA-BR-8372-01 6 29454570 29454570 C T MAS1L Silent p.R370R 0.21 TCGA-BR-8372-01 6 30121844 30121844 G A TRIM10 Nonsense_Mutation p.R450* 0.30 TCGA-BR-8372-01 6 30572185 30572185 A G PPP1R10 Silent p.P402P 0.04 TCGA-BR-8372-01 6 30575625 30575625 T C PPP1R10 Missense_Mutation p.E125G 0.17 tolerated(0.07) benign(0.395) TCGA-BR-8372-01 6 3119739 3119739 C T BPHL Intron 0.21 TCGA-BR-8372-01 6 31238246 31238247 GT - HLA-C Frame_Shift_Del p.H212Rfs*8 0.46 TCGA-BR-8372-01 6 31556429 31556429 C T LST1 Silent p.C97C 0.34 TCGA-BR-8372-01 6 31765402 31765402 A - LSM2 3'UTR 0.48 TCGA-BR-8372-01 6 32261427 32261427 A G C6orf10 Silent p.S341S 0.32 TCGA-BR-8372-01 6 32709238 32709239 - CTG HLA-DQA2 In_Frame_Ins p.L9dup 0.33 TCGA-BR-8372-01 6 32798079 32798079 T C TAP2 Missense_Mutation p.I534V 0.12 tolerated(0.29) benign(0.023) TCGA-BR-8372-01 6 33543097 33543097 A G BAK1 Missense_Mutation p.Y110H 0.28 tolerated(0.34) benign(0.134) TCGA-BR-8372-01 6 33636774 33636774 C G ITPR3 Missense_Mutation p.A677G 0.19 tolerated(0.31) benign(0.005) TCGA-BR-8372-01 6 34512185 34512185 G C SPDEF Silent p.L16L 0.26 TCGA-BR-8372-01 6 34574621 34574621 A G C6orf106 Missense_Mutation p.L191P 0.29 deleterious(0) probably_damaging(0.997) TCGA-BR-8372-01 6 35762936 35762936 C T CLPS Missense_Mutation p.R109H 0.17 tolerated(0.07) benign(0.025) TCGA-BR-8372-01 6 36767803 36767803 G A CPNE5 Silent p.F76F 0.09 TCGA-BR-8372-01 6 39161960 39161960 C T KCNK5 Missense_Mutation p.G207S 0.31 deleterious(0.04) probably_damaging(0.918) TCGA-BR-8372-01 6 42890866 42890866 C - PTCRA Frame_Shift_Del p.P55Lfs*113 0.32 TCGA-BR-8372-01 6 42975937 42975937 A G PPP2R5D Splice_Site p.X286_splice 0.24 TCGA-BR-8372-01 6 43023644 43023644 G A MRPL2 Nonsense_Mutation p.R208* 0.25 TCGA-BR-8372-01 6 43098273 43098273 T C PTK7 Missense_Mutation p.L237P 0.33 deleterious(0) probably_damaging(0.936) TCGA-BR-8372-01 6 43325442 43325442 G A ZNF318 Nonsense_Mutation p.R204* 0.35 TCGA-BR-8372-01 6 43475025 43475025 A G LRRC73 Missense_Mutation p.L301P 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.641) TCGA-BR-8372-01 6 44988338 44988338 C T SUPT3H Missense_Mutation p.R84Q 0.33 deleterious(0) probably_damaging(0.998) TCGA-BR-8372-01 6 45296155 45296155 A G RUNX2 5'UTR 0.20 TCGA-BR-8372-01 6 47647856 47647856 T C GPR111 Missense_Mutation p.V174A 0.21 tolerated(0.71) benign(0.002) TCGA-BR-8372-01 6 49407996 49407996 G T MUT Missense_Mutation p.H627N 0.36 deleterious_low_confidence(0) probably_damaging(1) TCGA-BR-8372-01 6 49586892 49586892 T - RHAG Frame_Shift_Del p.N114Tfs*2 0.31 TCGA-BR-8372-01 6 49936565 49936566 - T DEFB113 Frame_Shift_Ins p.T25Nfs*35 0.31 TCGA-BR-8372-01 6 5216852 5216852 T G LYRM4 Missense_Mutation p.Q69P 0.29 deleterious(0) probably_damaging(0.999) TCGA-BR-8372-01 6 52370497 52370497 T C TRAM2 Missense_Mutation p.I259V 0.10 deleterious(0.01) benign(0.086) TCGA-BR-8372-01 6 56394279 56394279 A T DST Silent p.T3231T 0.24 TCGA-BR-8372-01 6 56401586 56401587 GA - DST Frame_Shift_Del p.L2964Qfs*2 0.23 TCGA-BR-8372-01 6 56918192 56918192 A G KIAA1586 Missense_Mutation p.M299V 0.32 deleterious(0.03) benign(0.005) TCGA-BR-8372-01 6 70428896 70428896 A G LMBRD1 Silent p.T238T 0.38 TCGA-BR-8372-01 6 72892051 72892051 G A RIMS1 Missense_Mutation p.V293M 0.40 tolerated(0.39) benign(0.421) TCGA-BR-8372-01 6 7586188 7586188 A G DSP 3'UTR 0.37 TCGA-BR-8372-01 6 78172894 78172894 C T HTR1B Missense_Mutation p.R76Q 0.21 tolerated(0.43) benign(0.025) TCGA-BR-8372-01 6 7862547 7862547 C - BMP6 Frame_Shift_Del p.R342Efs*24 0.25 TCGA-BR-8372-01 6 79726328 79726328 G A PHIP Missense_Mutation p.R390C 0.37 deleterious(0.03) probably_damaging(0.995) TCGA-BR-8372-01 6 85446984 85446984 C T TBX18 Missense_Mutation p.A415T 0.31 tolerated(0.49) benign(0.051) TCGA-BR-8372-01 6 87797872 87797872 G A CGA Missense_Mutation p.S16L 0.53 tolerated(0.28) benign(0.002) TCGA-BR-8372-01 6 87967380 87967380 A T ZNF292 Nonsense_Mutation p.K1345* 0.41 TCGA-BR-8372-01 6 88144681 88144681 C A C6ORF165 Missense_Mutation p.D468E 0.29 tolerated(1) benign(0.004) TCGA-BR-8372-01 6 89888394 89888394 T - GABRR1 3'UTR 0.33 TCGA-BR-8372-01 6 90415853 90415853 A - MDN1 Frame_Shift_Del p.F2691Lfs*7 0.23 TCGA-BR-8372-01 6 99848584 99848584 T - PNISR Frame_Shift_Del p.K750Nfs*71 0.19 TCGA-BR-8372-01 6 99848834 99848834 T - PNISR Frame_Shift_Del p.K667Rfs*7 0.20 TCGA-BR-8372-01 6 99856034 99856034 A T PNISR Missense_Mutation p.L263M 0.36 tolerated(0.46) benign(0.015) TCGA-BR-8372-01 7 100849593 100849593 C T PLOD3 Missense_Mutation p.R729H 0.41 deleterious(0) probably_damaging(1) TCGA-BR-8372-01 7 101837135 101837135 A G CUX1 Missense_Mutation p.M375V 0.32 deleterious(0.05) unknown(0) TCGA-BR-8372-01 7 102197663 102197663 G A SPDYE2 Silent p.S221S 0.25 TCGA-BR-8372-01 7 102213002 102213002 T C POLR2J3 5'Flank 0.16 TCGA-BR-8372-01 7 102760123 102760123 A - NAPEPLD Frame_Shift_Del p.F281Sfs*14 0.29 TCGA-BR-8372-01 7 103061308 103061308 T - SLC26A5 Frame_Shift_Del p.I57* 0.29 TCGA-BR-8372-01 7 103808969 103808969 G A ORC5 Nonsense_Mutation p.Q277* 0.28 TCGA-BR-8372-01 7 104753084 104753084 C A KMT2E Silent p.P1627P 0.45 TCGA-BR-8372-01 7 107746988 107746988 A - LAMB4 Frame_Shift_Del p.F207Lfs*15 0.19 TCGA-BR-8372-01 7 107807391 107807391 T C NRCAM Silent p.S1147S 0.46 TCGA-BR-8372-01 7 110763371 110763371 T C LRRN3 Silent p.S181S 0.35 TCGA-BR-8372-01 7 11501698 11501698 C T THSD7A Missense_Mutation p.C814Y 0.36 deleterious(0) probably_damaging(1) TCGA-BR-8372-01 7 116381068 116381068 G A MET Missense_Mutation p.A564T 0.37 tolerated(0.45) benign(0.002) TCGA-BR-8372-01 7 117351448 117351448 A - CTTNBP2 3'UTR 0.64 TCGA-BR-8372-01 7 124404154 124404154 G A GPR37 Missense_Mutation p.R293W 0.32 deleterious(0) probably_damaging(0.999) TCGA-BR-8372-01 7 124404490 124404490 A - GPR37 Frame_Shift_Del p.Y181Tfs*65 0.30 TCGA-BR-8372-01 7 127669309 127669309 G A LRRC4 Missense_Mutation p.T462M 0.36 tolerated(0.28) benign(0.011) TCGA-BR-8372-01 7 127669674 127669674 G A LRRC4 Silent p.L340L 0.23 TCGA-BR-8372-01 7 128498158 128498158 G A FLNC Missense_Mutation p.S2626N 0.12 tolerated(0.07) benign(0.199) TCGA-BR-8372-01 7 128505608 128505608 G A ATP6V1F Missense_Mutation p.M140I 0.29 tolerated(0.12) benign(0.013) TCGA-BR-8372-01 7 130561524 130561524 T A MIR29A 3'Flank 0.32 TCGA-BR-8372-01 7 133168945 133168945 A - EXOC4 Intron 0.31 TCGA-BR-8372-01 7 135269586 135269586 C A NUP205 Missense_Mutation p.A350E 0.44 tolerated(0.2) benign(0.315) TCGA-BR-8372-01 7 137151673 137151673 C T DGKI Intron 0.23 TCGA-BR-8372-01 7 138603524 138603524 A - KIAA1549 Frame_Shift_Del p.L283* 0.31 TCGA-BR-8372-01 7 139285327 139285327 G A HIPK2 Silent p.H757H 0.41 TCGA-BR-8372-01 7 13975473 13975473 G - ETV1 Frame_Shift_Del p.T139Hfs*116 0.29 TCGA-BR-8372-01 7 141352635 141352635 C T AGK Missense_Mutation p.P394S 0.30 tolerated(0.13) benign(0.024) TCGA-BR-8372-01 7 142379031 142379031 C A MTRNR2L6 3'Flank 0.38 TCGA-BR-8372-01 7 142583338 142583339 - C TRPV6 5'UTR 0.24 TCGA-BR-8372-01 7 143085726 143085726 C A ZYX Missense_Mutation p.A430E 0.32 deleterious(0.02) possibly_damaging(0.826) TCGA-BR-8372-01 7 143096798 143096798 G A EPHA1 Missense_Mutation p.R261W 0.33 deleterious(0.01) benign(0.006) TCGA-BR-8372-01 7 150034380 150034380 C A LRRC61 Missense_Mutation p.P144T 0.36 tolerated(0.53) benign(0.133) TCGA-BR-8372-01 7 151845524 151845524 A - KMT2C Frame_Shift_Del p.F4496Lfs*21 0.28 TCGA-BR-8372-01 7 152012386 152012386 T - KMT2C Frame_Shift_Del p.S143Vfs*3 0.30 TCGA-BR-8372-01 7 15240850 15240850 G A AGMO 3'UTR 0.20 TCGA-BR-8372-01 7 154672632 154672632 C T DPP6 Missense_Mutation p.R705C 0.52 deleterious(0) probably_damaging(1) TCGA-BR-8372-01 7 155538000 155538000 C T RBM33 Missense_Mutation p.P895S 0.45 tolerated(0.15) unknown(0) TCGA-BR-8372-01 7 21946038 21946038 G A CDCA7L Nonsense_Mutation p.Q264* 0.31 TCGA-BR-8372-01 7 21985443 21985443 T C CDCA7L 5'UTR 0.10 TCGA-BR-8372-01 7 2274830 2274830 C T FTSJ2 Missense_Mutation p.S223N 0.32 deleterious(0) probably_damaging(0.999) TCGA-BR-8372-01 7 23509592 23509592 G A IGF2BP3 Silent p.D46D 0.41 TCGA-BR-8372-01 7 26904108 26904108 G - SKAP2 5'UTR 0.23 TCGA-BR-8372-01 7 27140534 27140534 A C HOXA2 Silent p.P314P 0.32 TCGA-BR-8372-01 7 27195865 27195865 G T HOXA7 Silent p.A100A 0.33 TCGA-BR-8372-01 7 30963164 30963164 G A AQP1 Missense_Mutation p.V244M 0.25 deleterious(0.01) benign(0.195) TCGA-BR-8372-01 7 32110114 32110114 C T PDE1C Intron 0.41 TCGA-BR-8372-01 7 32526806 32526806 A - LSM5 3'UTR 0.50 TCGA-BR-8372-01 7 3678636 3678636 G A SDK1 Silent p.K153K 0.52 TCGA-BR-8372-01 7 3678637 3678637 T C SDK1 Missense_Mutation p.Y154H 0.14 tolerated(0.08) possibly_damaging(0.457) TCGA-BR-8372-01 7 3681641 3681641 G A SDK1 Missense_Mutation p.R206H 0.08 tolerated(0.26) benign(0.005) TCGA-BR-8372-01 7 37780555 37780555 T - GPR141 Frame_Shift_Del p.F188Lfs*3 0.27 TCGA-BR-8372-01 7 37960770 37960770 C T EPDR1 Missense_Mutation p.R77W 0.20 deleterious(0) benign(0.377) TCGA-BR-8372-01 7 38295970 38295970 G T TRGJP2 Missense_Mutation p.A10E 0.29 unknown(0) TCGA-BR-8372-01 7 38725534 38725534 G A FAM183B Silent p.Y24Y 0.33 TCGA-BR-8372-01 7 38794339 38794339 A C VPS41 Missense_Mutation p.V584G 0.36 deleterious(0) probably_damaging(0.981) TCGA-BR-8372-01 7 4056808 4056808 G A SDK1 Missense_Mutation p.R809H 0.38 tolerated(0.09) probably_damaging(0.988) TCGA-BR-8372-01 7 4249683 4249683 T G SDK1 Missense_Mutation p.F1810V 0.28 deleterious(0.04) probably_damaging(0.999) TCGA-BR-8372-01 7 44805082 44805082 G A ZMIZ2 Missense_Mutation p.V716M 0.22 tolerated(0.12) benign(0.145) TCGA-BR-8372-01 7 45954411 45954411 G A IGFBP3 3'UTR 0.31 TCGA-BR-8372-01 7 48019123 48019123 G A HUS1 5'UTR 0.46 TCGA-BR-8372-01 7 48313595 48313595 A - ABCA13 Frame_Shift_Del p.K1446Nfs*11 0.22 TCGA-BR-8372-01 7 48317944 48317944 T - ABCA13 Frame_Shift_Del p.F2386Sfs*4 0.29 TCGA-BR-8372-01 7 53103659 53103659 C T POM121L12 Missense_Mutation p.R99C 0.46 deleterious(0) probably_damaging(0.942) TCGA-BR-8372-01 7 6029582 6029582 G A PMS2 Silent p.C331C 0.49 TCGA-BR-8372-01 7 64864403 64864403 G A ZNF92 Missense_Mutation p.G459D 0.30 deleterious(0.04) probably_damaging(1) TCGA-BR-8372-01 7 70800611 70800611 C T WBSCR17 Missense_Mutation p.P105L 0.28 tolerated(0.09) probably_damaging(0.995) TCGA-BR-8372-01 7 73106939 73106939 G A WBSCR22 Missense_Mutation p.R158Q 0.42 deleterious(0) probably_damaging(0.999) TCGA-BR-8372-01 7 73609551 73609551 G A EIF4H Silent p.T220T 0.28 TCGA-BR-8372-01 7 74212122 74212122 A G GTF2IRD2 Missense_Mutation p.S577P 0.30 deleterious(0.03) possibly_damaging(0.827) TCGA-BR-8372-01 7 84642151 84642151 C T SEMA3D Missense_Mutation p.R572H 0.43 deleterious(0) probably_damaging(0.999) TCGA-BR-8372-01 7 86394652 86394652 G A GRM3 Missense_Mutation p.R64Q 0.39 tolerated(0.12) probably_damaging(1) TCGA-BR-8372-01 7 86479839 86479839 A G GRM3 Missense_Mutation p.T849A 0.43 tolerated(0.53) benign(0.001) TCGA-BR-8372-01 7 86988696 86988696 A - CROT Intron 0.15 TCGA-BR-8372-01 7 87148696 87148696 C T ABCB1 Missense_Mutation p.R958Q 0.32 deleterious(0.05) benign(0.041) TCGA-BR-8372-01 7 87165820 87165820 C T ABCB1 Missense_Mutation p.G812E 0.36 deleterious(0) probably_damaging(0.987) TCGA-BR-8372-01 7 88389214 88389214 C T ZNF804B 5'UTR 0.41 TCGA-BR-8372-01 7 905639 905639 G A SUN1 Missense_Mutation p.A639T 0.07 deleterious(0) possibly_damaging(0.817) TCGA-BR-8372-01 7 933435 933435 G T GET4 Missense_Mutation p.D269Y 0.25 deleterious(0) probably_damaging(0.999) TCGA-BR-8372-01 7 96318150 96318150 T - SHFM1 3'UTR 0.30 TCGA-BR-8372-01 7 96639203 96639203 G A DLX6 Silent p.A242A 0.34 TCGA-BR-8372-01 7 96654080 96654080 C A DLX5 5'UTR 0.58 TCGA-BR-8372-01 7 98254285 98254285 G A NPTX2 Missense_Mutation p.R232H 0.34 deleterious(0.01) possibly_damaging(0.466) TCGA-BR-8372-01 7 99084582 99084582 G A ZNF789 Missense_Mutation p.C250Y 0.31 deleterious(0.01) probably_damaging(0.926) TCGA-BR-8372-01 7 99092122 99092122 T C ZNF394 Missense_Mutation p.H239R 0.32 tolerated(0.29) benign(0.047) TCGA-BR-8372-01 7 99764249 99764249 C T GAL3ST4 Missense_Mutation p.R102H 0.18 tolerated(0.32) benign(0.081) TCGA-BR-8372-01 8 101084439 101084439 C T RGS22 Missense_Mutation p.G120D 0.22 deleterious(0) probably_damaging(0.972) TCGA-BR-8372-01 8 103274272 103274272 A - UBR5 Frame_Shift_Del p.F2571Lfs*4 0.27 TCGA-BR-8372-01 8 105361304 105361304 T C DCSTAMP Missense_Mutation p.L175P 0.46 deleterious(0.03) benign(0.058) TCGA-BR-8372-01 8 110499026 110499026 A G PKHD1L1 Missense_Mutation p.T3286A 0.22 tolerated(0.36) benign(0.021) TCGA-BR-8372-01 8 116426822 116426822 T C TRPS1 Missense_Mutation p.Y1105C 0.17 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BR-8372-01 8 120800681 120800681 G A TAF2 Missense_Mutation p.L564F 0.27 deleterious(0) possibly_damaging(0.901) TCGA-BR-8372-01 8 124449570 124449570 T C WDYHV1 Silent p.T168T 0.24 TCGA-BR-8372-01 8 124989707 124989707 G T FER1L6 Missense_Mutation p.Q307H 0.17 deleterious(0) probably_damaging(1) TCGA-BR-8372-01 8 125072642 125072642 T C FER1L6 Intron 0.14 TCGA-BR-8372-01 8 125080031 125080031 A - FER1L6 Frame_Shift_Del p.G1237Afs*10 0.28 TCGA-BR-8372-01 8 125565673 125565673 G T MTSS1 Missense_Mutation p.P610T 0.20 deleterious(0) probably_damaging(0.999) TCGA-BR-8372-01 8 132051861 132051861 G A ADCY8 Missense_Mutation p.T240M 0.27 tolerated(0.1) possibly_damaging(0.586) TCGA-BR-8372-01 8 133152330 133152330 C A KCNQ3 Missense_Mutation p.A521S 0.24 tolerated(0.09) probably_damaging(0.999) TCGA-BR-8372-01 8 142225974 142225974 C T SLC45A4 Missense_Mutation p.A558T 0.16 tolerated(0.24) probably_damaging(0.953) TCGA-BR-8372-01 8 142366837 142366837 C A GPR20 3'UTR 0.25 TCGA-BR-8372-01 8 143695260 143695260 G A ARC Missense_Mutation p.R125C 0.57 deleterious_low_confidence(0) possibly_damaging(0.502) TCGA-BR-8372-01 8 144943163 144943163 C T EPPK1 Missense_Mutation p.R1420H 0.08 possibly_damaging(0.642) TCGA-BR-8372-01 8 145004449 145004449 A G PLEC Silent p.G962G 0.36 TCGA-BR-8372-01 8 145109541 145109542 - GG OPLAH Frame_Shift_Ins p.H870Pfs*29 0.14 TCGA-BR-8372-01 8 145624857 145624857 T C CPSF1 Missense_Mutation p.T427A 0.22 tolerated(0.89) benign(0.007) TCGA-BR-8372-01 8 145640211 145640211 C T SLC39A4 Missense_Mutation p.A292T 0.17 tolerated(0.31) benign(0.14) TCGA-BR-8372-01 8 145722764 145722764 C T PPP1R16A Missense_Mutation p.L63F 0.33 tolerated(0.15) benign(0.066) TCGA-BR-8372-01 8 16850775 16850775 A G FGF20 Missense_Mutation p.Y148H 0.13 deleterious(0) probably_damaging(0.999) TCGA-BR-8372-01 8 17542011 17542011 G A MTUS1 Silent p.I888I 0.28 TCGA-BR-8372-01 8 17611350 17611350 A G MTUS1 Missense_Mutation p.V656A 0.24 tolerated(0.83) benign(0.005) TCGA-BR-8372-01 8 19363078 19363078 T C CSGALNACT1 Missense_Mutation p.S90G 0.27 tolerated(0.15) benign(0.003) TCGA-BR-8372-01 8 2005503 2005503 C A MYOM2 Silent p.R101R 0.27 TCGA-BR-8372-01 8 21859729 21859729 G T XPO7 Missense_Mutation p.Q963H 0.26 tolerated(0.11) benign(0.367) TCGA-BR-8372-01 8 22085854 22085854 G A PHYHIP Missense_Mutation p.T6M 0.20 deleterious_low_confidence(0.02) probably_damaging(0.924) TCGA-BR-8372-01 8 22332491 22332491 G A PPP3CC Missense_Mutation p.R25Q 0.22 tolerated(0.12) benign(0.148) TCGA-BR-8372-01 8 22476529 22476529 G A CCAR2 Splice_Site p.X841_splice 0.17 TCGA-BR-8372-01 8 22550321 22550321 T C EGR3 Missense_Mutation p.Y46C 0.34 deleterious(0.02) benign(0.098) TCGA-BR-8372-01 8 24167472 24167473 - A ADAM28 Frame_Shift_Ins p.N75Kfs*15 0.26 TCGA-BR-8372-01 8 24333965 24333965 C A ADAM7 Missense_Mutation p.P218H 0.27 tolerated(0.08) probably_damaging(0.998) TCGA-BR-8372-01 8 25158099 25158099 T C DOCK5 Missense_Mutation p.Y258H 0.26 deleterious(0.02) possibly_damaging(0.845) TCGA-BR-8372-01 8 28575186 28575186 G A EXTL3 Missense_Mutation p.R537H 0.29 deleterious(0) possibly_damaging(0.619) TCGA-BR-8372-01 8 2944619 2944619 C A CSMD1 Missense_Mutation p.A2492S 0.15 probably_damaging(0.999) TCGA-BR-8372-01 8 30402081 30402081 G A RBPMS Silent p.A156A 0.21 TCGA-BR-8372-01 8 32463104 32463104 A G NRG1 Silent p.K101K 0.18 TCGA-BR-8372-01 8 32613931 32613931 A G NRG1 Missense_Mutation p.K277E 0.25 deleterious(0) benign(0.034) TCGA-BR-8372-01 8 3263588 3263588 C T CSMD1 Missense_Mutation p.G743R 0.34 probably_damaging(1) TCGA-BR-8372-01 8 36694371 36694371 G C KCNU1 Missense_Mutation p.A476P 0.26 deleterious(0) probably_damaging(1) TCGA-BR-8372-01 8 37609162 37609162 A G ERLIN2 Missense_Mutation p.Q223R 0.18 deleterious(0.02) benign(0.081) TCGA-BR-8372-01 8 37672412 37672412 A G GPR124 Splice_Site p.X89_splice 0.21 TCGA-BR-8372-01 8 37730469 37730469 G A RAB11FIP1 Silent p.L617L 0.27 TCGA-BR-8372-01 8 37793281 37793281 G - GOT1L1 Frame_Shift_Del p.N291Tfs*24 0.32 TCGA-BR-8372-01 8 37823533 37823533 C T ADRB3 Missense_Mutation p.R152H 0.31 tolerated(0.55) probably_damaging(0.967) TCGA-BR-8372-01 8 38282121 38282121 C T FGFR1 Missense_Mutation p.S312N 0.24 deleterious(0.01) probably_damaging(0.991) TCGA-BR-8372-01 8 38677178 38677178 C A TACC1 Missense_Mutation p.P139H 0.27 deleterious(0.01) possibly_damaging(0.664) TCGA-BR-8372-01 8 38913110 38913110 T C ADAM9 Silent p.G470G 0.22 TCGA-BR-8372-01 8 53568877 53568877 T - RB1CC1 Frame_Shift_Del p.N1171Tfs*2 0.14 TCGA-BR-8372-01 8 53852546 53852546 T C NPBWR1 Missense_Mutation p.S27P 0.13 deleterious(0.03) benign(0.36) TCGA-BR-8372-01 8 55539136 55539137 - A RP1 Frame_Shift_Ins p.P901Tfs*2 0.22 TCGA-BR-8372-01 8 56725669 56725669 A G TGS1 Missense_Mutation p.I811V 0.29 tolerated(0.34) benign(0.005) TCGA-BR-8372-01 8 57026167 57026167 C T MOS Silent p.T125T 0.26 TCGA-BR-8372-01 8 57026186 57026186 C T MOS Missense_Mutation p.R119H 0.26 tolerated(0.07) probably_damaging(0.947) TCGA-BR-8372-01 8 57128951 57128951 C A CHCHD7 Intron 0.24 TCGA-BR-8372-01 8 59409279 59409279 A G CYP7A1 Silent p.N264N 0.27 TCGA-BR-8372-01 8 623502 623502 G A ERICH1 Missense_Mutation p.R284W 0.25 tolerated(0.06) benign(0.035) TCGA-BR-8372-01 8 6302639 6302639 A - MCPH1 Frame_Shift_Del p.T468Pfs*32 0.21 TCGA-BR-8372-01 8 63831057 63831059 GAA - NKAIN3 In_Frame_Del p.E175del 0.26 TCGA-BR-8372-01 8 642608 642608 A G ERICH1 Silent p.T58T 0.37 TCGA-BR-8372-01 8 66621267 66621267 A G MTFR1 Silent p.V330V 0.29 TCGA-BR-8372-01 8 67716612 67716612 A - SGK3 Frame_Shift_Del p.K63Nfs*8 0.15 TCGA-BR-8372-01 8 79590834 79590834 A - ZC2HC1A Frame_Shift_Del p.K45Nfs*20 0.23 TCGA-BR-8372-01 8 8234511 8234511 C T SGK223 Missense_Mutation p.A470T 0.14 benign(0.219) TCGA-BR-8372-01 8 86377546 86377546 G A CA2 Missense_Mutation p.R27H 0.17 tolerated(0.12) benign(0.291) TCGA-BR-8372-01 8 8748510 8748510 C T MFHAS1 Missense_Mutation p.A687T 0.11 deleterious(0.04) possibly_damaging(0.682) TCGA-BR-8372-01 8 87645015 87645015 A - CNGB3 Frame_Shift_Del p.S429Lfs*9 0.09 TCGA-BR-8372-01 8 91094979 91094979 G A CALB1 5'UTR 0.31 TCGA-BR-8372-01 8 92407491 92407491 T - SLC26A7 3'Flank 0.25 TCGA-BR-8372-01 8 94713595 94713595 C T FAM92A1 Missense_Mutation p.A57V 0.19 tolerated(0.37) benign(0.002) TCGA-BR-8372-01 8 94747361 94747361 A G RBM12B Silent p.A426A 0.29 TCGA-BR-8372-01 8 95411754 95411754 A G RAD54B Silent p.N422N 0.25 TCGA-BR-8372-01 8 95877854 95877854 C T INTS8 Nonsense_Mutation p.R733* 0.27 TCGA-BR-8372-01 8 97156989 97156989 C T GDF6 Silent p.P390P 0.44 TCGA-BR-8372-01 8 98736901 98736901 T - MTDH 3'UTR 0.21 TCGA-BR-8372-01 8 99146847 99146847 G A POP1 Missense_Mutation p.S324N 0.09 tolerated(0.65) benign(0.005) TCGA-BR-8372-01 8 99158813 99158813 C T POP1 Nonsense_Mutation p.Q538* 0.27 TCGA-BR-8372-01 8 99761554 99761554 A G STK3 Missense_Mutation p.Y129H 0.23 deleterious(0.02) probably_damaging(0.976) TCGA-BR-8372-01 9 101818643 101818643 G - COL15A1 Frame_Shift_Del p.P1101Rfs*52 0.16 TCGA-BR-8372-01 9 104133708 104133708 A G BAAT 5'UTR 0.26 TCGA-BR-8372-01 9 104449268 104449268 T C GRIN3A Missense_Mutation p.Q305R 0.37 tolerated(0.49) benign(0) TCGA-BR-8372-01 9 106864838 106864838 A - SMC2 Frame_Shift_Del p.N337Ifs*9 0.16 TCGA-BR-8372-01 9 109689899 109689899 C A ZNF462 Missense_Mutation p.L1236I 0.32 benign(0.313) TCGA-BR-8372-01 9 114986256 114986256 G A PTBP3 Missense_Mutation p.R518C 0.25 tolerated(0.18) benign(0.036) TCGA-BR-8372-01 9 115652551 115652551 G A SLC46A2 Silent p.Y137Y 0.31 TCGA-BR-8372-01 9 116999992 116999992 C A COL27A1 Silent p.P908P 0.16 TCGA-BR-8372-01 9 117124104 117124104 C T AKNA Silent p.P668P 0.34 TCGA-BR-8372-01 9 119188283 119188283 G A ASTN2 Silent p.R1238R 0.25 TCGA-BR-8372-01 9 119461528 119461528 G - TRIM32 Frame_Shift_Del p.V504Wfs*30 0.19 TCGA-BR-8372-01 9 123714951 123714951 A - C5 3'UTR 0.25 TCGA-BR-8372-01 9 127074912 127074912 C T NEK6 Missense_Mutation p.A106V 0.14 tolerated(0.18) probably_damaging(0.955) TCGA-BR-8372-01 9 130167812 130167812 T A SLC2A8 Missense_Mutation p.F422I 0.10 deleterious(0) probably_damaging(0.984) TCGA-BR-8372-01 9 130469311 130469311 A G C9orf117 Translation_Start_Site p.M1? 0.22 deleterious(0) benign(0.043) TCGA-BR-8372-01 9 130829063 130829063 C - NAIF1 Frame_Shift_Del p.P107Lfs*14 0.35 TCGA-BR-8372-01 9 130913980 130913980 G A LCN2 Silent p.T113T 0.33 TCGA-BR-8372-01 9 131095136 131095136 C T COQ4 Silent p.I180I 0.29 TCGA-BR-8372-01 9 131371511 131371511 A - SPTAN1 Frame_Shift_Del p.K1570Nfs*22 0.32 TCGA-BR-8372-01 9 131586433 131586433 G A C9orf114 Missense_Mutation p.P278S 0.31 deleterious(0.03) possibly_damaging(0.817) TCGA-BR-8372-01 9 131708573 131708573 C T DOLK Missense_Mutation p.R337Q 0.36 deleterious(0) probably_damaging(0.999) TCGA-BR-8372-01 9 134022878 134022878 A G NUP214 Silent p.G649G 0.34 TCGA-BR-8372-01 9 134073099 134073099 C A NUP214 Silent p.S1406S 0.11 TCGA-BR-8372-01 9 135522411 135522411 A G DDX31 Silent p.D439D 0.26 TCGA-BR-8372-01 9 136320470 136320470 C A ADAMTS13 Missense_Mutation p.Q1105K 0.36 tolerated(0.52) benign(0.038) TCGA-BR-8372-01 9 136918511 136918511 C T BRD3 Missense_Mutation p.S30N 0.38 tolerated(0.56) benign(0) TCGA-BR-8372-01 9 137644457 137644457 G A COL5A1 Missense_Mutation p.G562D 0.25 probably_damaging(1) TCGA-BR-8372-01 9 138678163 138678163 G A KCNT1 Missense_Mutation p.A1100T 0.33 tolerated(0.11) benign(0.006) TCGA-BR-8372-01 9 139107139 139107139 T C QSOX2 Missense_Mutation p.I407M 0.42 tolerated(0.23) benign(0.059) TCGA-BR-8372-01 9 139256601 139256601 C T DNLZ Missense_Mutation p.E134K 0.31 deleterious(0.02) probably_damaging(0.962) TCGA-BR-8372-01 9 139353986 139353986 G A SEC16A Missense_Mutation p.A1738V 0.30 deleterious(0) probably_damaging(0.999) TCGA-BR-8372-01 9 139743751 139743751 A G PHPT1 5'UTR 0.25 TCGA-BR-8372-01 9 139879360 139879360 A T LCNL1 Missense_Mutation p.H131L 0.56 deleterious_low_confidence(0) possibly_damaging(0.507) TCGA-BR-8372-01 9 140356679 140356679 G - PNPLA7 Frame_Shift_Del p.I1200Sfs*148 0.31 TCGA-BR-8372-01 9 140437890 140437890 T - PNPLA7 Frame_Shift_Del p.N167Tfs*63 0.26 TCGA-BR-8372-01 9 140901268 140901268 C T CACNA1B Missense_Mutation p.S675L 0.21 deleterious(0) benign(0.029) TCGA-BR-8372-01 9 140952659 140952659 A C CACNA1B Missense_Mutation p.Q1422P 0.24 deleterious(0) probably_damaging(0.96) TCGA-BR-8372-01 9 14819329 14819329 G A FREM1 Missense_Mutation p.R817W 0.28 deleterious(0) possibly_damaging(0.586) TCGA-BR-8372-01 9 17394904 17394904 C T CNTLN Nonsense_Mutation p.R818* 0.31 TCGA-BR-8372-01 9 17502598 17502598 A - CNTLN Frame_Shift_Del p.K1392Rfs*3 0.22 TCGA-BR-8372-01 9 26842399 26842399 A C CAAP1 Missense_Mutation p.V329G 0.32 tolerated(0.16) probably_damaging(0.943) TCGA-BR-8372-01 9 27212816 27212816 C T TEK Missense_Mutation p.A933V 0.15 deleterious(0) probably_damaging(0.982) TCGA-BR-8372-01 9 27948842 27948842 T G LINGO2 3'UTR 0.29 TCGA-BR-8372-01 9 32481366 32481366 G A DDX58 Missense_Mutation p.A537V 0.18 tolerated(0.11) benign(0.225) TCGA-BR-8372-01 9 35062113 35062113 C T VCP Missense_Mutation p.R323H 0.25 deleterious(0.01) benign(0.082) TCGA-BR-8372-01 9 35563010 35563010 A G FAM166B Silent p.S118S 0.26 TCGA-BR-8372-01 9 37442081 37442081 T C ZBTB5 Silent p.S156S 0.31 TCGA-BR-8372-01 9 37744566 37744566 A G FRMPD1 Missense_Mutation p.Y846C 0.30 deleterious(0) probably_damaging(0.94) TCGA-BR-8372-01 9 40716160 40716161 GA - FAM74A3 RNA 0.15 TCGA-BR-8372-01 9 69420380 69420380 A G ANKRD20A4 Missense_Mutation p.T424A 0.08 tolerated(0.14) benign(0.066) TCGA-BR-8372-01 9 73399051 73399051 G A TRPM3 Missense_Mutation p.A373V 0.36 deleterious(0) probably_damaging(0.997) TCGA-BR-8372-01 9 74309493 74309493 A G TMEM2 Missense_Mutation p.Y1210H 0.17 tolerated(0.06) benign(0.325) TCGA-BR-8372-01 9 75406888 75406888 C T TMC1 Silent p.I437I 0.07 TCGA-BR-8372-01 9 77454951 77454951 C T TRPM6 Missense_Mutation p.G178D 0.45 deleterious(0) probably_damaging(1) TCGA-BR-8372-01 9 78506105 78506105 G - PCSK5 Frame_Shift_Del p.S5Afs*58 0.32 TCGA-BR-8372-01 9 79229502 79229502 A G PRUNE2 Missense_Mutation p.L3084P 0.13 deleterious(0) probably_damaging(0.917) TCGA-BR-8372-01 9 79635344 79635344 G T FOXB2 Silent p.A258A 0.48 TCGA-BR-8372-01 9 79635350 79635350 G C FOXB2 Silent p.A260A 0.47 TCGA-BR-8372-01 9 90535618 90535618 T G SPATA31C1 RNA 0.29 TCGA-BR-8372-01 9 94487069 94487069 C T ROR2 Silent p.S569S 0.37 TCGA-BR-8372-01 9 95077545 95077545 A G NOL8 Silent p.S454S 0.36 TCGA-BR-8372-01 9 95152283 95152283 A G OGN Silent p.G161G 0.21 TCGA-BR-8372-01 9 95236979 95236979 A - ASPN Frame_Shift_Del p.P68Hfs*24 0.33 TCGA-BR-8372-01 9 95618525 95618525 T C ZNF484 Missense_Mutation p.S33G 0.37 tolerated(0.28) benign(0.253) TCGA-BR-8372-01 9 990229 990229 G A DMRT3 Missense_Mutation p.E215K 0.30 tolerated(0.09) benign(0.046) TCGA-BR-8372-01 9 99083474 99083474 C - SLC35D2 3'UTR 0.33 TCGA-BR-8372-01 9 99150711 99150711 G - ZNF367 Frame_Shift_Del p.T288Lfs*2 0.24 TCGA-BR-8372-01 9 99272005 99272005 G A CDC14B Silent p.G470G 0.31 TCGA-BR-8372-01 X 101971716 101971716 T C GPRASP2 Missense_Mutation p.V640A 0.72 deleterious(0) probably_damaging(0.996) TCGA-BR-8372-01 X 103267750 103267750 A G H2BFWT Silent p.A161A 0.71 TCGA-BR-8372-01 X 120009221 120009221 C T CT47B1 Missense_Mutation p.E102K 0.65 tolerated(0.75) possibly_damaging(0.459) TCGA-BR-8372-01 X 120182454 120182454 G T GLUD2 Missense_Mutation p.V306F 0.65 deleterious(0) possibly_damaging(0.878) TCGA-BR-8372-01 X 123164875 123164875 C A STAG2 Missense_Mutation p.P63H 0.41 deleterious(0.03) benign(0.264) TCGA-BR-8372-01 X 123185062 123185062 G A STAG2 Missense_Mutation p.R370Q 0.69 deleterious(0) possibly_damaging(0.71) TCGA-BR-8372-01 X 125686323 125686323 C T DCAF12L1 Missense_Mutation p.R90H 0.66 tolerated(0.16) benign(0.028) TCGA-BR-8372-01 X 128723914 128723914 C T OCRL Silent p.S854S 0.69 TCGA-BR-8372-01 X 129185910 129185910 T C BCORL1 Missense_Mutation p.M1591T 0.69 benign(0.001) TCGA-BR-8372-01 X 135956190 135956190 A - RBMX 3'UTR 0.29 TCGA-BR-8372-01 X 1428507 1428507 C T CSF2RA 3'UTR 0.44 TCGA-BR-8372-01 X 1501528 1501528 A G IL3RA 3'UTR 0.21 TCGA-BR-8372-01 X 150908125 150908125 C T CNGA2 Missense_Mutation p.R99C 0.62 deleterious(0.04) benign(0.006) TCGA-BR-8372-01 X 153043732 153043732 A T PLXNB3 Missense_Mutation p.K1832I 0.59 deleterious(0) probably_damaging(1) TCGA-BR-8372-01 X 15306176 15306176 C T ASB11 Missense_Mutation p.G225D 0.69 deleterious(0) probably_damaging(1) TCGA-BR-8372-01 X 153070220 153070220 C - PDZD4 Frame_Shift_Del p.D300Tfs*107 0.35 TCGA-BR-8372-01 X 153172147 153172147 G A AVPR2 Missense_Mutation p.A361T 0.72 tolerated(0.25) possibly_damaging(0.639) TCGA-BR-8372-01 X 153663742 153663742 G A ATP6AP1 Missense_Mutation p.S365N 0.78 deleterious(0.01) probably_damaging(0.986) TCGA-BR-8372-01 X 153670511 153670511 T C GDI1 Missense_Mutation p.Y349H 0.34 deleterious(0.01) possibly_damaging(0.662) TCGA-BR-8372-01 X 1546793 1546793 C A ASMTL Missense_Mutation p.G244V 0.30 deleterious(0.04) benign(0.025) TCGA-BR-8372-01 X 18622715 18622715 A G CDKL5 Silent p.S557S 0.37 TCGA-BR-8372-01 X 21609255 21609256 - A CNKSR2 Frame_Shift_Ins p.Y594Ifs*15 0.45 TCGA-BR-8372-01 X 23410726 23410726 C T PTCHD1 Missense_Mutation p.T364I 0.50 tolerated(0.25) benign(0.055) TCGA-BR-8372-01 X 23411676 23411676 G A PTCHD1 Missense_Mutation p.V681I 0.07 tolerated(0.38) benign(0.004) TCGA-BR-8372-01 X 2406643 2406643 C T ZBED1 3'UTR 0.39 TCGA-BR-8372-01 X 2825315 2825315 G - ARSD Frame_Shift_Del p.*594Efs*13 0.45 TCGA-BR-8372-01 X 306359 306359 A T PPP2R3B Missense_Mutation p.F310I 0.26 deleterious(0.01) benign(0.371) TCGA-BR-8372-01 X 39933822 39933822 C T BCOR Silent p.S259S 0.82 TCGA-BR-8372-01 X 40547715 40547715 C T MED14 Missense_Mutation p.R683H 0.70 deleterious(0.01) benign(0.439) TCGA-BR-8372-01 X 48320459 48320459 G A SLC38A5 Silent p.L235L 0.52 TCGA-BR-8372-01 X 48826019 48826019 C T KCND1 Silent p.E220E 0.65 TCGA-BR-8372-01 X 51639798 51639798 C A MAGED1 Silent p.I405I 0.14 TCGA-BR-8372-01 X 591566 591566 G A SHOX 5'UTR 0.36 TCGA-BR-8372-01 X 6451940 6451940 T G VCX3A Missense_Mutation p.Q136P 0.13 tolerated(0.22) unknown(0) TCGA-BR-8372-01 X 66765883 66765883 G A AR Missense_Mutation p.A299T 0.73 tolerated_low_confidence(0.08) benign(0.05) TCGA-BR-8372-01 X 68725963 68725963 C T FAM155B Missense_Mutation p.R280W 0.78 deleterious(0) probably_damaging(0.988) TCGA-BR-8372-01 X 6995384 6995384 C T HDHD1 Silent p.E152E 0.61 TCGA-BR-8372-01 X 70368014 70368014 G A NLGN3 Missense_Mutation p.E139K 0.69 deleterious(0) probably_damaging(0.999) TCGA-BR-8372-01 X 71425719 71425719 A T ERCC6L Missense_Mutation p.N966K 0.53 tolerated(0.1) benign(0.017) TCGA-BR-8372-01 X 7252076 7252076 C T STS Missense_Mutation p.R436C 0.23 deleterious(0.04) possibly_damaging(0.887) TCGA-BR-8372-01 X 79962956 79962956 A G BRWD3 Missense_Mutation p.V841A 0.10 tolerated(0.6) benign(0.004) TCGA-BR-8372-01 X 83403063 83403063 T - RPS6KA6 Frame_Shift_Del p.A110Pfs*3 0.31 TCGA-BR-8372-01 X 8502392 8502392 C T KAL1 Missense_Mutation p.R651Q 0.52 tolerated(0.68) benign(0.015) TCGA-BR-8372-01 X 88009023 88009023 A T CPXCR1 Missense_Mutation p.H203L 0.59 tolerated(0.11) benign(0.012) TCGA-BR-8372-01 X 91873260 91873260 C A PCDH11X Intron 0.77 TCGA-BR-8372-01 X 99663109 99663109 C T PCDH19 Missense_Mutation p.V163M 0.72 deleterious(0) probably_damaging(0.918) TCGA-BR-8372-01 Y 14898560 14898560 A G USP9Y Missense_Mutation p.M1130V 0.24 deleterious(0.02) benign(0.235) TCGA-BR-8372-01 Y 16942150 16942150 C - NLGN4Y Frame_Shift_Del p.A453Pfs*28 0.46 TCGA-BR-8372-01 Y 4924862 4924862 T C PCDH11Y 5'UTR 0.65 TCGA-BR-8372-01 Y 6114274 6114274 G A TSPY2 5'UTR 0.44 TCGA-BR-8373-01 10 118969314 118969314 G A KCNK18 Missense_Mutation p.R220H 0.18 tolerated(0.11) benign(0.091) TCGA-BR-8373-01 10 120802173 120802173 G A EIF3A Silent p.D953D 0.36 TCGA-BR-8373-01 10 26457674 26457674 A C MYO3A Missense_Mutation p.N1049H 0.17 deleterious(0) possibly_damaging(0.848) TCGA-BR-8373-01 10 50819913 50819913 C T SLC18A3 Missense_Mutation p.A376V 0.38 tolerated(0.22) benign(0.012) TCGA-BR-8373-01 10 58119237 58119237 C G ZWINT Missense_Mutation p.Q160H 0.12 deleterious(0) probably_damaging(0.986) TCGA-BR-8373-01 10 58119261 58119261 G C ZWINT Silent p.V152V 0.10 TCGA-BR-8373-01 11 1578592 1578592 G A DUSP8 Missense_Mutation p.A345V 0.27 tolerated(0.28) benign(0.011) TCGA-BR-8373-01 11 18194815 18194815 C T MRGPRX4 Silent p.T4T 0.14 TCGA-BR-8373-01 11 309201 309201 G A IFITM2 3'UTR 0.18 TCGA-BR-8373-01 11 55890770 55890770 A C OR8H3 Silent p.R308R 0.25 TCGA-BR-8373-01 11 56128326 56128326 T C OR8J1 Missense_Mutation p.S202P 0.28 deleterious(0.01) possibly_damaging(0.908) TCGA-BR-8373-01 11 5758675 5758675 C T OR56B1 Missense_Mutation p.A310V 0.45 deleterious(0.01) benign(0.004) TCGA-BR-8373-01 11 61557967 61557967 G A TMEM258 Silent p.F37F 0.24 TCGA-BR-8373-01 11 63066406 63066406 C G SLC22A10 Missense_Mutation p.S282C 0.07 deleterious(0) probably_damaging(0.999) TCGA-BR-8373-01 11 67225880 67225880 G A CABP4 Silent p.E230E 0.10 TCGA-BR-8373-01 11 74880733 74880748 GATGGGGCCAGGCCTG - SLCO2B1 Frame_Shift_Del p.M236Pfs*25 0.08 TCGA-BR-8373-01 11 77314623 77314623 A C AQP11 Silent p.V214V 0.29 TCGA-BR-8373-01 12 101759386 101759386 G C UTP20 Silent p.L2036L 0.16 TCGA-BR-8373-01 12 13061831 13061831 G A GPRC5A Silent p.T216T 0.41 TCGA-BR-8373-01 12 30872159 30872159 C A CAPRIN2 Intron 0.21 TCGA-BR-8373-01 12 57628067 57628067 C T SHMT2 Nonsense_Mutation p.Q480* 0.35 TCGA-BR-8373-01 13 31338224 31338224 C T ALOX5AP Missense_Mutation p.P156L 0.40 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-BR-8373-01 14 105418917 105418917 G A AHNAK2 Silent p.G957G 0.52 TCGA-BR-8373-01 14 106320638 106320638 C T IGHM Missense_Mutation p.R391Q 0.69 tolerated(0.34) benign(0.253) TCGA-BR-8373-01 14 65009426 65009426 G A HSPA2 Missense_Mutation p.G620D 0.67 tolerated_low_confidence(0.06) benign(0.011) TCGA-BR-8373-01 14 73989212 73989212 G T HEATR4 Silent p.A215A 0.22 TCGA-BR-8373-01 15 25442727 25442727 C T SNORD115-15 RNA 0.24 TCGA-BR-8373-01 15 68445992 68445992 G A PIAS1 Missense_Mutation p.R298Q 0.40 deleterious(0.01) possibly_damaging(0.644) TCGA-BR-8373-01 16 1538406 1538406 G A PTX4 Silent p.P21P 0.07 TCGA-BR-8373-01 16 3534809 3534809 C T NAA60 Missense_Mutation p.S228L 0.33 deleterious_low_confidence(0.02) benign(0.257) TCGA-BR-8373-01 16 85695249 85695249 G A GSE1 Missense_Mutation p.R713Q 0.23 tolerated(0.1) possibly_damaging(0.863) TCGA-BR-8373-01 16 8858686 8858686 G A ABAT Missense_Mutation p.R180Q 0.49 tolerated(0.56) benign(0.013) TCGA-BR-8373-01 17 49708889 49708889 C T CA10 3'UTR 0.53 TCGA-BR-8373-01 17 7224449 7224449 G A NEURL4 Silent p.G1114G 0.53 TCGA-BR-8373-01 17 76167103 76167103 A T SYNGR2 Missense_Mutation p.K102M 0.21 deleterious(0) probably_damaging(1) TCGA-BR-8373-01 17 76422673 76422673 C T AC061992.1 Nonsense_Mutation p.Q89* 0.10 TCGA-BR-8373-01 18 43248324 43248324 G A SLC14A2 Missense_Mutation p.A640T 0.25 deleterious(0.05) benign(0.043) TCGA-BR-8373-01 18 7037694 7037694 C T LAMA1 Silent p.P540P 0.43 TCGA-BR-8373-01 19 15353741 15353741 G A BRD4 Missense_Mutation p.R1047W 0.27 possibly_damaging(0.689) TCGA-BR-8373-01 19 18285919 18285919 T A IFI30 Missense_Mutation p.Y68N 0.08 deleterious(0) probably_damaging(0.999) TCGA-BR-8373-01 19 18329839 18329839 C A PDE4C Missense_Mutation p.D326Y 0.28 deleterious(0.01) probably_damaging(0.978) TCGA-BR-8373-01 19 39306211 39306211 A G ECH1 3'UTR 0.50 TCGA-BR-8373-01 19 45852836 45852836 C T KLC3 Silent p.N373N 0.22 TCGA-BR-8373-01 19 51742771 51742771 A C CD33 Splice_Site p.X309_splice 0.14 TCGA-BR-8373-01 19 9577900 9577900 T G ZNF560 Missense_Mutation p.M575L 0.64 tolerated(0.35) benign(0.007) TCGA-BR-8373-01 1 115428813 115428813 A - SYCP1 Frame_Shift_Del p.E360Kfs*32 0.13 TCGA-BR-8373-01 1 152188605 152188605 G A HRNR Nonsense_Mutation p.R1834* 0.11 TCGA-BR-8373-01 1 154179817 154179817 G A C1orf43 3'UTR 0.21 TCGA-BR-8373-01 1 155002981 155002981 G T DCST2 Missense_Mutation p.L316M 0.38 tolerated(0.13) benign(0.403) TCGA-BR-8373-01 1 224606064 224606064 C T WDR26 Missense_Mutation p.R306Q 0.43 tolerated(0.51) benign(0.011) TCGA-BR-8373-01 1 229730496 229730521 AGTTTGAATTAGGGTGGAATTTGACA - TAF5L Nonsense_Mutation p.C431* 0.12 TCGA-BR-8373-01 1 230839016 230839016 G T AGT Silent p.T443T 0.28 TCGA-BR-8373-01 1 29185501 29185501 T C OPRD1 Missense_Mutation p.I88T 0.22 deleterious(0) probably_damaging(0.995) TCGA-BR-8373-01 1 36297027 36297028 - T AGO4 Frame_Shift_Ins p.P285Sfs*19 0.24 TCGA-BR-8373-01 1 36520681 36520681 A C AGO3 Silent p.P803P 0.12 TCGA-BR-8373-01 1 53925618 53925618 G A DMRTB1 Silent p.A164A 0.36 TCGA-BR-8373-01 1 6631130 6631130 T C TAS1R1 Missense_Mutation p.V118A 0.20 tolerated(0.54) benign(0.02) TCGA-BR-8373-01 20 3129655 3129655 G A FASTKD5 Missense_Mutation p.A21V 0.36 tolerated(0.16) benign(0.025) TCGA-BR-8373-01 20 40710603 40710603 C T PTPRT Missense_Mutation p.M1397I 0.20 deleterious(0) probably_damaging(0.968) TCGA-BR-8373-01 22 23503113 23503113 G A RAB36 Missense_Mutation p.E289K 0.28 deleterious(0) probably_damaging(0.971) TCGA-BR-8373-01 22 50647001 50647001 G A SELO Silent p.E265E 0.05 TCGA-BR-8373-01 2 167134663 167134663 C T SCN9A Missense_Mutation p.R824Q 0.13 deleterious(0.02) possibly_damaging(0.865) TCGA-BR-8373-01 2 203680659 203680659 T G ICA1L Missense_Mutation p.H253P 0.16 deleterious(0.05) possibly_damaging(0.453) TCGA-BR-8373-01 2 235404498 235404498 G C ARL4C 3'UTR 0.10 TCGA-BR-8373-01 2 241686695 241686695 C T KIF1A Silent p.S1007S 0.47 TCGA-BR-8373-01 2 26203307 26203307 C G KIF3C Missense_Mutation p.E494Q 0.12 benign(0.016) TCGA-BR-8373-01 2 37296009 37296009 A C HEATR5B Missense_Mutation p.L331R 0.30 deleterious(0) probably_damaging(0.987) TCGA-BR-8373-01 2 55872550 55872550 A G PNPT1 Silent p.L586L 0.38 TCGA-BR-8373-01 2 65496000 65496000 T C ACTR2 3'UTR 0.50 TCGA-BR-8373-01 2 85576544 85576544 C T RETSAT Silent p.V320V 0.16 TCGA-BR-8373-01 2 85766384 85766384 A C MAT2A 5'UTR 0.27 TCGA-BR-8373-01 3 10028366 10028366 C G EMC3 5'UTR 0.28 TCGA-BR-8373-01 3 118621614 118621614 C T IGSF11 Missense_Mutation p.G350D 0.36 deleterious(0.03) possibly_damaging(0.663) TCGA-BR-8373-01 3 129221675 129221675 G A IFT122 Missense_Mutation p.D884N 0.37 deleterious(0.04) probably_damaging(0.998) TCGA-BR-8373-01 3 14861698 14861698 T G FGD5 Missense_Mutation p.S374A 0.14 tolerated_low_confidence(0.07) benign(0.444) TCGA-BR-8373-01 3 186917605 186917605 G A RTP1 Missense_Mutation p.R180H 0.34 deleterious(0.05) possibly_damaging(0.708) TCGA-BR-8373-01 3 48224509 48224509 C G CDC25A Missense_Mutation p.L113F 0.34 deleterious(0.01) probably_damaging(1) TCGA-BR-8373-01 3 49847484 49847484 G A UBA7 Missense_Mutation p.A589V 0.09 deleterious(0.01) benign(0.17) TCGA-BR-8373-01 4 100128701 100128702 - CCC ADH6 In_Frame_Ins p.G288dup 0.23 TCGA-BR-8373-01 4 114223992 114223992 G T ANK2 Nonsense_Mutation p.E849* 0.10 TCGA-BR-8373-01 4 120241826 120241826 C A FABP2 Missense_Mutation p.R80M 0.17 deleterious(0.02) benign(0.008) TCGA-BR-8373-01 4 134073167 134073167 C T PCDH10 Silent p.N624N 0.42 TCGA-BR-8373-01 4 175897990 175897990 T G ADAM29 Silent p.A438A 0.37 TCGA-BR-8373-01 4 177146474 177146474 G A ASB5 Missense_Mutation p.S72L 0.64 deleterious(0) probably_damaging(1) TCGA-BR-8373-01 4 3432142 3432142 G T RGS12 Nonsense_Mutation p.E1192* 0.25 TCGA-BR-8373-01 5 110407428 110407428 T G TSLP 5'UTR 0.44 TCGA-BR-8373-01 5 11346621 11346621 G A CTNND2 Silent p.S497S 0.22 TCGA-BR-8373-01 5 13716678 13716678 A G DNAH5 Missense_Mutation p.M4276T 0.19 benign(0.149) TCGA-BR-8373-01 5 140207976 140207976 G A PCDHA6 Silent p.A100A 0.26 TCGA-BR-8373-01 5 140502259 140502259 G A PCDHB4 Missense_Mutation p.V227I 0.28 tolerated_low_confidence(0.33) benign(0.067) TCGA-BR-8373-01 5 140736094 140736094 A G PCDHGA4 Missense_Mutation p.M443V 0.10 tolerated_low_confidence(0.09) benign(0.001) TCGA-BR-8373-01 5 180432479 180432479 C - BTNL3 Frame_Shift_Del p.Q337Kfs*15 0.17 TCGA-BR-8373-01 5 37169353 37169353 C A C5orf42 Missense_Mutation p.R2258I 0.15 deleterious(0) probably_damaging(0.98) TCGA-BR-8373-01 5 5235251 5235251 C T ADAMTS16 Nonsense_Mutation p.R659* 0.43 TCGA-BR-8373-01 5 75967731 75967731 G A IQGAP2 Silent p.S997S 0.50 TCGA-BR-8373-01 5 81613993 81613993 C T ATP6AP1L Silent p.I183I 0.07 TCGA-BR-8373-01 5 9629277 9629277 T A TAS2R1 Nonsense_Mutation p.K290* 0.17 TCGA-BR-8373-01 6 144075049 144075049 G A PHACTR2 Missense_Mutation p.E152K 0.27 tolerated(0.2) probably_damaging(0.96) TCGA-BR-8373-01 6 152725384 152725384 T C SYNE1 Silent p.E2263E 0.26 TCGA-BR-8373-01 6 155504497 155504497 A G TIAM2 Missense_Mutation p.D976G 0.10 tolerated(0.4) benign(0.002) TCGA-BR-8373-01 6 25670264 25670264 C T SCGN Missense_Mutation p.A144V 0.16 tolerated(0.29) benign(0.001) TCGA-BR-8373-01 6 31601316 31601316 G - PRRC2A Frame_Shift_Del p.G1495Vfs*46 0.14 TCGA-BR-8373-01 6 33231791 33231791 C T VPS52 Silent p.Q538Q 0.15 TCGA-BR-8373-01 6 56716385 56716385 G C RP11-472M19.2 Intron 0.14 TCGA-BR-8373-01 7 104377349 104377349 G T LHFPL3 Nonsense_Mutation p.E225* 0.30 TCGA-BR-8373-01 7 143772005 143772005 G - OR2A25 Frame_Shift_Del p.C233Afs*55 0.27 TCGA-BR-8373-01 7 14613993 14613993 G A DGKB Silent p.Y539Y 0.19 TCGA-BR-8373-01 8 101237549 101237549 C G SPAG1 Missense_Mutation p.R613G 0.40 tolerated(0.19) benign(0.006) TCGA-BR-8373-01 8 117658748 117658748 G A EIF3H Missense_Mutation p.P308L 0.36 tolerated(1) benign(0.001) TCGA-BR-8373-01 8 16021687 16021687 T C MSR1 Missense_Mutation p.H235R 0.60 tolerated(0.19) benign(0.005) TCGA-BR-8373-01 8 24358343 24358343 C T ADAM7 Silent p.V681V 0.15 TCGA-BR-8373-01 9 114840902 114840902 G A SUSD1 Missense_Mutation p.R557C 0.45 tolerated(0.06) benign(0.002) TCGA-BR-8373-01 9 130504085 130504085 A G SH2D3C Silent p.G690G 0.16 TCGA-BR-8373-01 9 136029548 136029548 C T GBGT1 Missense_Mutation p.V154I 0.45 tolerated(0.66) benign(0.105) TCGA-BR-8373-01 9 136320437 136320437 C T ADAMTS13 Missense_Mutation p.R1094C 0.21 deleterious(0.03) probably_damaging(0.93) TCGA-BR-8373-01 9 37861563 37861563 T A DCAF10 3'UTR 0.14 TCGA-BR-8373-01 9 71840295 71840295 A G TJP2 Missense_Mutation p.N374S 0.32 tolerated(0.29) benign(0.398) TCGA-BR-8373-01 9 72521031 72521031 T C C9orf135 Silent p.S223S 0.15 TCGA-BR-8373-01 9 97367856 97367856 A C FBP1 Missense_Mutation p.D236E 0.14 tolerated(0.46) benign(0.002) TCGA-BR-8373-01 X 135572290 135572290 A G BRS3 Splice_Site p.X145_splice 0.06 TCGA-BR-8373-01 X 144337348 144337348 A C SPANXN1 3'UTR 0.28 TCGA-BR-8380-01 10 11259399 11259399 G A CELF2 Missense_Mutation p.V95I 0.28 tolerated(0.06) benign(0.017) TCGA-BR-8380-01 10 49376666 49376666 G A FRMPD2 Missense_Mutation p.A1170V 0.08 tolerated(1) benign(0.003) TCGA-BR-8380-01 10 8100641 8100641 G A GATA3 Missense_Mutation p.M205I 0.08 tolerated(0.41) benign(0.005) TCGA-BR-8380-01 11 102563733 102563733 C T MMP27 Silent p.P411P 0.16 TCGA-BR-8380-01 11 130079626 130079627 - G ST14 Frame_Shift_Ins p.D828Rfs*70 0.15 TCGA-BR-8380-01 11 55999758 55999758 T G OR5T2 Missense_Mutation p.S302R 0.13 deleterious(0.01) possibly_damaging(0.548) TCGA-BR-8380-01 11 56510973 56510973 C T OR9G4 Silent p.K105K 0.13 TCGA-BR-8380-01 12 110230484 110230484 C T TRPV4 Silent p.T599T 0.08 TCGA-BR-8380-01 12 4479725 4479725 G A FGF23 Silent p.S180S 0.11 TCGA-BR-8380-01 14 102700063 102700063 G A MOK Silent p.I218I 0.09 TCGA-BR-8380-01 14 106173821 106173821 G A IGHA1 Missense_Mutation p.T249M 0.14 deleterious(0) probably_damaging(0.999) TCGA-BR-8380-01 14 20019959 20019959 C G POTEM Missense_Mutation p.D88H 0.05 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-BR-8380-01 14 55907216 55907216 C T TBPL2 Silent p.P16P 0.09 TCGA-BR-8380-01 14 65008905 65008905 C T HSPA2 Silent p.Y446Y 0.21 TCGA-BR-8380-01 14 81609934 81609934 C T TSHR Missense_Mutation p.T511M 0.24 deleterious(0) probably_damaging(1) TCGA-BR-8380-01 15 25223672 25223672 T G SNRPN 3'UTR 0.11 TCGA-BR-8380-01 15 63111822 63111822 T A TLN2 Splice_Site p.X2293_splice 0.24 TCGA-BR-8380-01 15 69328256 69328256 C T NOX5 Missense_Mutation p.R390C 0.14 deleterious(0.02) possibly_damaging(0.563) TCGA-BR-8380-01 15 73552659 73552659 G A NEO1 Missense_Mutation p.V751I 0.16 tolerated(0.18) benign(0.015) TCGA-BR-8380-01 15 85383832 85383832 C T ALPK3 Missense_Mutation p.A643V 0.09 tolerated_low_confidence(0.15) benign(0.011) TCGA-BR-8380-01 15 90799041 90799041 C T TTLL13 Missense_Mutation p.R158W 0.10 deleterious(0.01) probably_damaging(0.988) TCGA-BR-8380-01 16 16256896 16256896 C T ABCC6 Missense_Mutation p.V1154I 0.16 deleterious(0.04) benign(0.202) TCGA-BR-8380-01 16 2285333 2285333 G A E4F1 Silent p.A705A 0.14 TCGA-BR-8380-01 16 2815007 2815007 C G SRRM2 Missense_Mutation p.P1493R 0.11 unknown(0) TCGA-BR-8380-01 16 67424237 67424237 C T TPPP3 Missense_Mutation p.R124Q 0.07 tolerated(0.1) probably_damaging(0.997) TCGA-BR-8380-01 17 2203683 2203683 G A SMG6 Missense_Mutation p.P122S 0.11 tolerated_low_confidence(0.83) benign(0.001) TCGA-BR-8380-01 17 31618488 31618488 C G ASIC2 Missense_Mutation p.E216Q 0.12 deleterious(0.02) possibly_damaging(0.699) TCGA-BR-8380-01 17 43922979 43922979 C A SPPL2C Missense_Mutation p.A236D 0.17 tolerated(0.36) probably_damaging(0.946) TCGA-BR-8380-01 17 4794768 4794768 G A MINK1 Silent p.R586R 0.10 TCGA-BR-8380-01 17 62857004 62857004 A G LRRC37A3 Missense_Mutation p.I1087T 0.18 deleterious(0) possibly_damaging(0.495) TCGA-BR-8380-01 17 70119088 70119089 - GT SOX9 Frame_Shift_Ins p.H222Cfs*32 0.14 TCGA-BR-8380-01 17 75398336 75398336 G A SEPT9 Missense_Mutation p.R91Q 0.21 deleterious_low_confidence(0.01) probably_damaging(0.99) TCGA-BR-8380-01 19 14591450 14591450 G A GIPC1 Silent p.L143L 0.12 TCGA-BR-8380-01 19 19329874 19329874 G A NCAN Missense_Mutation p.R75Q 0.13 deleterious(0) probably_damaging(0.998) TCGA-BR-8380-01 19 19824904 19824904 G A ZNF14 Nonsense_Mutation p.R63* 0.11 TCGA-BR-8380-01 19 22363376 22363376 A C ZNF676 Missense_Mutation p.N381K 0.09 deleterious(0.02) benign(0.048) TCGA-BR-8380-01 19 40366308 40366308 G A FCGBP Silent p.C4642C 0.16 TCGA-BR-8380-01 19 45296762 45296762 G A CBLC Missense_Mutation p.R390H 0.25 deleterious(0) probably_damaging(0.999) TCGA-BR-8380-01 19 50912857 50912857 C T POLD1 Silent p.S696S 0.13 TCGA-BR-8380-01 19 54647756 54647757 - A CNOT3 Frame_Shift_Ins p.V93Sfs*51 0.09 TCGA-BR-8380-01 19 57909885 57909885 G A ZNF548 Missense_Mutation p.C89Y 0.26 tolerated(0.14) benign(0.346) TCGA-BR-8380-01 19 9297018 9297018 G T OR7D2 Silent p.L187L 0.06 TCGA-BR-8380-01 1 11715958 11715958 C T FBXO44 Silent p.P22P 0.10 TCGA-BR-8380-01 1 158226001 158226001 T C CD1A Missense_Mutation p.L178P 0.10 deleterious(0) probably_damaging(0.997) TCGA-BR-8380-01 1 167974018 167974018 A G DCAF6 Silent p.T455T 0.13 TCGA-BR-8380-01 1 169565209 169565209 G C SELP Missense_Mutation p.S685R 0.11 tolerated(1) benign(0.002) TCGA-BR-8380-01 1 176668366 176668366 C T PAPPA2 Silent p.H959H 0.10 TCGA-BR-8380-01 1 176668713 176668713 A C PAPPA2 Missense_Mutation p.K1075T 0.12 tolerated(0.33) possibly_damaging(0.786) TCGA-BR-8380-01 1 20097049 20097049 A G TMCO4 Missense_Mutation p.F123S 0.26 deleterious(0.01) possibly_damaging(0.655) TCGA-BR-8380-01 1 212798427 212798427 A T FAM71A Missense_Mutation p.T70S 0.20 deleterious(0) probably_damaging(0.999) TCGA-BR-8380-01 1 237870335 237870335 G A RYR2 Missense_Mutation p.E3223K 0.16 possibly_damaging(0.473) TCGA-BR-8380-01 1 7863904 7863904 C T PER3 Nonsense_Mutation p.R377* 0.10 TCGA-BR-8380-01 1 92433710 92433710 A T BRDT Missense_Mutation p.D113V 0.12 deleterious(0) probably_damaging(0.991) TCGA-BR-8380-01 20 279293 279293 A C ZCCHC3 Silent p.R356R 0.07 TCGA-BR-8380-01 20 62187885 62187885 C T C20orf195 Missense_Mutation p.T290M 0.14 tolerated(0.11) benign(0.434) TCGA-BR-8380-01 22 17472781 17472781 T G GAB4 Silent p.R154R 0.09 TCGA-BR-8380-01 22 46318808 46318808 G T WNT7B Nonsense_Mutation p.C326* 0.14 TCGA-BR-8380-01 2 101646088 101646088 G A TBC1D8 Missense_Mutation p.A681V 0.16 deleterious(0) probably_damaging(1) TCGA-BR-8380-01 2 102644697 102644697 C T IL1R2 Missense_Mutation p.T347M 0.11 tolerated(0.05) probably_damaging(0.961) TCGA-BR-8380-01 2 176981985 176981985 G A HOXD10 Missense_Mutation p.E142K 0.08 tolerated(0.28) possibly_damaging(0.828) TCGA-BR-8380-01 2 183104879 183104879 C T PDE1A Missense_Mutation p.R119Q 0.07 deleterious(0) probably_damaging(0.999) TCGA-BR-8380-01 2 21227217 21227217 G T APOB Missense_Mutation p.P4004Q 0.12 possibly_damaging(0.844) TCGA-BR-8380-01 2 21227262 21227262 C T APOB Missense_Mutation p.R3989H 0.10 benign(0) TCGA-BR-8380-01 2 215013968 215013968 T G SPAG16 Missense_Mutation p.N566K 0.09 deleterious(0.02) possibly_damaging(0.851) TCGA-BR-8380-01 3 121828218 121828220 GAA - CD86 In_Frame_Del p.K274del 0.11 TCGA-BR-8380-01 3 134670615 134670615 G A EPHB1 Missense_Mutation p.A176T 0.05 deleterious(0) probably_damaging(0.983) TCGA-BR-8380-01 3 184073278 184073278 G A CLCN2 Missense_Mutation p.R404W 0.09 tolerated(0.16) probably_damaging(0.973) TCGA-BR-8380-01 4 104640591 104640591 G A TACR3 Missense_Mutation p.P81L 0.11 deleterious(0) probably_damaging(1) TCGA-BR-8380-01 4 1374737 1374737 C T UVSSA Missense_Mutation p.R608C 0.07 deleterious(0.02) benign(0.246) TCGA-BR-8380-01 4 153247366 153247366 C T FBXW7 Missense_Mutation p.R479Q 0.11 deleterious(0.03) probably_damaging(1) TCGA-BR-8380-01 4 39254766 39254766 A C WDR19 Missense_Mutation p.R910S 0.08 tolerated(0.27) benign(0.008) TCGA-BR-8380-01 5 13769145 13769145 G C DNAH5 Missense_Mutation p.S3274C 0.10 possibly_damaging(0.902) TCGA-BR-8380-01 5 138221962 138221962 C T CTNNA1 Missense_Mutation p.T375I 0.05 deleterious(0.05) benign(0.37) TCGA-BR-8380-01 5 55094378 55094378 G A DDX4 Missense_Mutation p.V532I 0.12 tolerated(0.71) benign(0.053) TCGA-BR-8380-01 5 63256939 63256939 G T HTR1A Missense_Mutation p.A203D 0.05 deleterious(0) probably_damaging(1) TCGA-BR-8380-01 6 163991873 163991873 G A QKI 3'UTR 0.11 TCGA-BR-8380-01 6 55145214 55145214 G A HCRTR2 Silent p.A359A 0.13 TCGA-BR-8380-01 7 138329520 138329520 C T SVOPL Missense_Mutation p.R244H 0.06 tolerated(0.25) benign(0.013) TCGA-BR-8380-01 7 150936233 150936233 G A SMARCD3 Missense_Mutation p.R470C 0.17 deleterious(0.01) benign(0.224) TCGA-BR-8380-01 7 156685662 156685662 G A LMBR1 Missense_Mutation p.A9V 0.17 tolerated(0.86) benign(0.003) TCGA-BR-8380-01 7 27135441 27135441 C T HOXA1 Missense_Mutation p.D31N 0.09 tolerated(0.12) probably_damaging(0.941) TCGA-BR-8380-01 7 43484720 43484720 C T HECW1 Missense_Mutation p.T650M 0.13 tolerated_low_confidence(0.13) benign(0.003) TCGA-BR-8380-01 7 57187985 57187985 T G ZNF479 Missense_Mutation p.K379N 0.25 deleterious(0) benign(0.014) TCGA-BR-8380-01 7 92855746 92855746 G C HEPACAM2 Missense_Mutation p.A5G 0.10 deleterious_low_confidence(0.02) benign(0.185) TCGA-BR-8380-01 8 144378347 144378347 G A ZNF696 Missense_Mutation p.V168M 0.15 deleterious(0.01) probably_damaging(0.987) TCGA-BR-8380-01 9 103059233 103059233 C A INVS Missense_Mutation p.H941N 0.17 tolerated_low_confidence(0.34) benign(0.028) TCGA-BR-8380-01 9 112899719 112899719 C A PALM2-AKAP2 Nonsense_Mutation p.S632* 0.08 TCGA-BR-8380-01 9 130489637 130489637 G A TTC16 Missense_Mutation p.E553K 0.16 tolerated(0.66) benign(0.016) TCGA-BR-8380-01 9 130674788 130674788 C T ST6GALNAC4 Missense_Mutation p.V124I 0.11 benign(0.104) TCGA-BR-8380-01 9 23762098 23762098 G C ELAVL2 Nonsense_Mutation p.Y45* 0.14 TCGA-BR-8380-01 9 23762120 23762120 T G ELAVL2 Missense_Mutation p.K38T 0.09 deleterious(0.03) benign(0.109) TCGA-BR-8380-01 9 37521626 37521626 G T FBXO10 Missense_Mutation p.P714T 0.14 tolerated(0.77) benign(0.04) TCGA-BR-8380-01 X 125685743 125685743 G A DCAF12L1 Silent p.D283D 0.14 TCGA-BR-8380-01 X 13781866 13781866 G T OFD1 Missense_Mutation p.A831S 0.06 tolerated(0.19) possibly_damaging(0.703) TCGA-BR-8380-01 X 15402056 15402056 A T FIGF Missense_Mutation p.W5R 0.28 deleterious(0) possibly_damaging(0.794) TCGA-BR-8381-01 10 115966034 115966034 G A TDRD1 Missense_Mutation p.M443I 0.10 tolerated(0.11) possibly_damaging(0.584) TCGA-BR-8381-01 10 11894056 11894056 G A PROSER2 5'UTR 0.12 TCGA-BR-8381-01 10 51579230 51579230 C T NCOA4 Missense_Mutation p.A46V 0.18 deleterious(0) probably_damaging(0.998) TCGA-BR-8381-01 10 70509365 70509365 G A CCAR1 Silent p.E347E 0.08 TCGA-BR-8381-01 10 72192776 72192776 C T NODAL Silent p.P320P 0.14 TCGA-BR-8381-01 10 89624298 89624298 C G PTEN Missense_Mutation p.D24E 0.06 tolerated(0.06) possibly_damaging(0.498) TCGA-BR-8381-01 10 95719465 95719465 G A PIPSL RNA 0.15 TCGA-BR-8381-01 11 104915338 104915338 C T CARD16 Missense_Mutation p.E19K 0.10 tolerated(0.62) benign(0.115) TCGA-BR-8381-01 11 1856285 1856285 C T SYT8 Intron 0.18 TCGA-BR-8381-01 11 18793560 18793560 C T PTPN5 5'UTR 0.14 TCGA-BR-8381-01 11 2424472 2424472 G A TSSC4 Silent p.Q203Q 0.14 TCGA-BR-8381-01 11 27016359 27016359 C T FIBIN Missense_Mutation p.R96C 0.20 deleterious_low_confidence(0) probably_damaging(0.917) TCGA-BR-8381-01 11 47264443 47264443 G A ACP2 Silent p.F323F 0.08 TCGA-BR-8381-01 11 55904988 55904988 G T OR8J3 Silent p.I69I 0.10 TCGA-BR-8381-01 11 5758141 5758141 A T OR56B1 Missense_Mutation p.Y132F 0.11 deleterious(0.02) benign(0.216) TCGA-BR-8381-01 11 59211548 59211548 G T OR5A1 Missense_Mutation p.A303S 0.09 tolerated(0.06) benign(0.35) TCGA-BR-8381-01 11 62554020 62554020 C G TAF6L Missense_Mutation p.A374G 0.21 tolerated(0.08) possibly_damaging(0.843) TCGA-BR-8381-01 11 64434944 64434944 G A NRXN2 Missense_Mutation p.P526S 0.12 deleterious(0.01) benign(0.007) TCGA-BR-8381-01 11 65268614 65268614 C T MALAT1 RNA 0.10 TCGA-BR-8381-01 11 65425949 65425949 G A RELA Missense_Mutation p.T229M 0.20 tolerated(0.18) possibly_damaging(0.631) TCGA-BR-8381-01 11 68380660 68380660 G T PPP6R3 3'UTR 0.24 TCGA-BR-8381-01 11 73022573 73022573 G A ARHGEF17 Missense_Mutation p.A964T 0.07 tolerated_low_confidence(0.17) benign(0.126) TCGA-BR-8381-01 11 85407418 85407418 C A SYTL2 Missense_Mutation p.D1161Y 0.07 deleterious(0) probably_damaging(0.999) TCGA-BR-8381-01 11 92534929 92534929 T A FAT3 Missense_Mutation p.I2917K 0.06 benign(0.365) TCGA-BR-8381-01 12 106729908 106729908 G A TCP11L2 Silent p.V353V 0.08 TCGA-BR-8381-01 12 114793594 114793594 G A TBX5 Missense_Mutation p.P434S 0.22 tolerated(0.15) benign(0.042) TCGA-BR-8381-01 12 22069960 22069960 T G ABCC9 Missense_Mutation p.I162L 0.10 tolerated(0.72) benign(0) TCGA-BR-8381-01 12 24737079 24737079 C T LINC00477 RNA 0.12 TCGA-BR-8381-01 12 40626149 40626149 A T LRRK2 Missense_Mutation p.D104V 0.07 deleterious(0) possibly_damaging(0.748) TCGA-BR-8381-01 12 4409052 4409052 G T CCND2 Missense_Mutation p.Q249H 0.17 deleterious(0) probably_damaging(0.999) TCGA-BR-8381-01 12 49425038 49425038 G A KMT2D Nonsense_Mutation p.R4484* 0.10 TCGA-BR-8381-01 12 56222006 56222006 C A DNAJC14 Missense_Mutation p.G146V 0.04 deleterious_low_confidence(0.03) possibly_damaging(0.516) TCGA-BR-8381-01 12 56482393 56482393 A C ERBB3 Missense_Mutation p.K314T 0.13 deleterious(0.01) probably_damaging(0.951) TCGA-BR-8381-01 12 57605026 57605026 C T LRP1 Silent p.C4328C 0.26 TCGA-BR-8381-01 12 6973267 6973267 G A USP5 Missense_Mutation p.A718T 0.11 tolerated(0.6) benign(0.001) TCGA-BR-8381-01 12 81648709 81648709 G T ACSS3 3'UTR 0.06 TCGA-BR-8381-01 12 81732996 81732996 C T PPFIA2 Silent p.L837L 0.10 TCGA-BR-8381-01 13 108861005 108861005 C T LIG4 Missense_Mutation p.R871H 0.10 tolerated(0.1) benign(0.125) TCGA-BR-8381-01 13 86370491 86370491 T A SLITRK6 Missense_Mutation p.K51N 0.05 deleterious(0) benign(0.411) TCGA-BR-8381-01 13 88328927 88328927 C T SLITRK5 Silent p.D428D 0.14 TCGA-BR-8381-01 14 24587663 24587663 G A DCAF11 Missense_Mutation p.R215H 0.13 deleterious(0.04) probably_damaging(0.972) TCGA-BR-8381-01 14 51561035 51561035 C T TRIM9 Missense_Mutation p.R208H 0.15 tolerated(0.06) benign(0.008) TCGA-BR-8381-01 14 52535485 52535485 G A NID2 Silent p.Y76Y 0.16 TCGA-BR-8381-01 14 53325069 53325069 G A FERMT2 3'UTR 0.10 TCGA-BR-8381-01 14 74764652 74764652 G A ABCD4 Missense_Mutation p.R136W 0.14 deleterious(0.02) probably_damaging(0.948) TCGA-BR-8381-01 15 27271924 27271924 G A GABRG3 Missense_Mutation p.D76N 0.22 deleterious(0.01) possibly_damaging(0.5) TCGA-BR-8381-01 15 41275164 41275164 C T INO80 Missense_Mutation p.R1450Q 0.09 tolerated(0.11) probably_damaging(0.968) TCGA-BR-8381-01 15 55516100 55516100 C T RAB27A Missense_Mutation p.A152T 0.10 deleterious(0.02) benign(0.326) TCGA-BR-8381-01 16 15501819 15501819 A G MPV17L Silent p.Q147Q 0.10 TCGA-BR-8381-01 16 23221166 23221166 C T SCNN1G Silent p.L391L 0.07 TCGA-BR-8381-01 16 3293377 3293377 C T MEFV Missense_Mutation p.V704I 0.09 tolerated(1) benign(0.002) TCGA-BR-8381-01 16 54966567 54966567 G A IRX5 Missense_Mutation p.R136H 0.18 deleterious(0) probably_damaging(0.999) TCGA-BR-8381-01 16 75563598 75563598 C T CHST5 Missense_Mutation p.V229M 0.11 deleterious(0) probably_damaging(1) TCGA-BR-8381-01 17 11583146 11583146 C A DNAH9 Missense_Mutation p.F1142L 0.06 benign(0.001) TCGA-BR-8381-01 17 27903635 27903635 G A GIT1 Silent p.L438L 0.14 TCGA-BR-8381-01 17 40474481 40474481 G A STAT3 Silent p.Y640Y 0.05 TCGA-BR-8381-01 17 48753410 48753410 C T ABCC3 Missense_Mutation p.S1009F 0.10 deleterious(0.02) possibly_damaging(0.588) TCGA-BR-8381-01 17 57232423 57232423 T C SKA2 Intron 0.17 TCGA-BR-8381-01 17 62758085 62758085 A C hsa-mir-6080 RNA 0.06 TCGA-BR-8381-01 17 64092380 64092380 G A CEP112 Missense_Mutation p.R253C 0.06 deleterious(0.02) benign(0) TCGA-BR-8381-01 17 79094804 79094804 G A AATK Missense_Mutation p.R978W 0.29 deleterious(0.01) possibly_damaging(0.719) TCGA-BR-8381-01 18 77170747 77170747 A C NFATC1 Missense_Mutation p.S145R 0.11 deleterious(0.04) benign(0.104) TCGA-BR-8381-01 19 14952325 14952325 C T OR7A10 Missense_Mutation p.R122Q 0.16 deleterious_low_confidence(0.01) benign(0.015) TCGA-BR-8381-01 19 16243123 16243123 G A RAB8A 3'UTR 0.10 TCGA-BR-8381-01 19 17951085 17951085 C T JAK3 Missense_Mutation p.R403H 0.12 tolerated(0.18) possibly_damaging(0.847) TCGA-BR-8381-01 19 36210704 36210704 G A KMT2B Missense_Mutation p.R152Q 0.11 unknown(0) TCGA-BR-8381-01 19 38126845 38126845 G A ZFP30 Silent p.A199A 0.08 TCGA-BR-8381-01 19 50140101 50140101 G A RRAS Silent p.F108F 0.08 TCGA-BR-8381-01 19 5789320 5789320 G A DUS3L Silent p.P266P 0.14 TCGA-BR-8381-01 1 111861744 111861744 C A CHIA Silent p.I306I 0.16 TCGA-BR-8381-01 1 14925487 14925487 C A KAZN 5'UTR 0.10 TCGA-BR-8381-01 1 152084711 152084711 G A TCHH Missense_Mutation p.R328C 0.11 unknown(0) TCGA-BR-8381-01 1 152327388 152327388 G T FLG2 Silent p.S958S 0.10 TCGA-BR-8381-01 1 154516513 154516513 G T TDRD10 Missense_Mutation p.R193L 0.05 tolerated(0.65) benign(0.069) TCGA-BR-8381-01 1 162325084 162325084 C T NOS1AP Nonsense_Mutation p.R235* 0.08 TCGA-BR-8381-01 1 19775381 19775381 A C CAPZB Intron 0.10 TCGA-BR-8381-01 1 204951064 204951064 C T NFASC Missense_Mutation p.P796S 0.41 deleterious(0.04) probably_damaging(0.993) TCGA-BR-8381-01 1 210856568 210856568 T G KCNH1 3'UTR 0.27 TCGA-BR-8381-01 1 211192417 211192417 T C KCNH1 Missense_Mutation p.N247S 0.06 tolerated(0.15) benign(0.31) TCGA-BR-8381-01 1 223179252 223179252 G A DISP1 Missense_Mutation p.V1505M 0.08 deleterious_low_confidence(0) possibly_damaging(0.873) TCGA-BR-8381-01 1 241798733 241798733 G A CHML Silent p.N112N 0.03 TCGA-BR-8381-01 1 27107180 27107180 C A ARID1A Nonsense_Mutation p.S2264* 0.07 TCGA-BR-8381-01 1 70493942 70493942 C T LRRC7 Missense_Mutation p.P590L 0.17 deleterious(0.04) benign(0.031) TCGA-BR-8381-01 1 70504683 70504683 C A LRRC7 Missense_Mutation p.A1021D 0.12 deleterious(0.05) benign(0.046) TCGA-BR-8381-01 1 93297626 93297626 C G RPL5 5'UTR 0.14 TCGA-BR-8381-01 20 14306206 14306206 T G FLRT3 Silent p.S649S 0.09 TCGA-BR-8381-01 20 36999964 36999964 A G LBP Missense_Mutation p.N420D 0.11 tolerated(0.12) benign(0.21) TCGA-BR-8381-01 20 37353478 37353478 G A SLC32A1 Silent p.T37T 0.12 TCGA-BR-8381-01 20 5903072 5903072 A C CHGB Missense_Mutation p.E94D 0.11 tolerated(0.1) benign(0.037) TCGA-BR-8381-01 20 5948582 5948582 G A MCM8 Silent p.K378K 0.10 TCGA-BR-8381-01 21 47918694 47918694 G A DIP2A Silent p.P201P 0.08 TCGA-BR-8381-01 22 35948090 35948090 C T RASD2 3'UTR 0.11 TCGA-BR-8381-01 22 41566511 41566511 T G EP300 Missense_Mutation p.L1463R 0.07 probably_damaging(1) TCGA-BR-8381-01 22 50515884 50515884 C T MLC1 Silent p.A157A 0.07 TCGA-BR-8381-01 22 50720370 50720370 G A PLXNB2 Silent p.A1086A 0.08 TCGA-BR-8381-01 2 112566679 112566679 C T ANAPC1 Missense_Mutation p.R1226Q 0.05 deleterious(0.01) probably_damaging(0.992) TCGA-BR-8381-01 2 160128292 160128292 A G WDSUB1 Missense_Mutation p.Y231H 0.11 tolerated(0.17) benign(0.084) TCGA-BR-8381-01 2 207170039 207170039 C T ZDBF2 Missense_Mutation p.R263C 0.17 tolerated(0.33) possibly_damaging(0.689) TCGA-BR-8381-01 2 207413054 207413054 G A ADAM23 Silent p.L281L 0.10 TCGA-BR-8381-01 2 27481713 27481713 G A SLC30A3 Missense_Mutation p.P62L 0.27 tolerated(0.75) benign(0) TCGA-BR-8381-01 2 49195873 49195873 C T FSHR Missense_Mutation p.S273N 0.23 deleterious(0.02) probably_damaging(0.974) TCGA-BR-8381-01 3 13395089 13395089 C G NUP210 Missense_Mutation p.E865Q 0.10 tolerated(0.8) benign(0.001) TCGA-BR-8381-01 3 178916639 178916639 A G PIK3CA Missense_Mutation p.E9G 0.14 deleterious(0) probably_damaging(0.999) TCGA-BR-8381-01 3 182925454 182925454 C T MCF2L2 Missense_Mutation p.R885Q 0.14 deleterious(0.03) benign(0.086) TCGA-BR-8381-01 3 2613203 2613203 G A CNTN4 Missense_Mutation p.E6K 0.17 tolerated(1) benign(0.002) TCGA-BR-8381-01 3 27152780 27152780 G A NEK10 Missense_Mutation p.H1168Y 0.14 tolerated_low_confidence(1) benign(0.001) TCGA-BR-8381-01 3 36779379 36779379 T G DCLK3 Silent p.R258R 0.10 TCGA-BR-8381-01 3 52018071 52018071 G A ACY1 5'UTR 0.08 TCGA-BR-8381-01 4 23803389 23803389 G A PPARGC1A Missense_Mutation p.R753C 0.10 tolerated(0.06) unknown(0) TCGA-BR-8381-01 4 62903554 62903554 C T LPHN3 Missense_Mutation p.R1165C 0.08 deleterious(0) probably_damaging(0.988) TCGA-BR-8381-01 4 65188413 65188413 C T TECRL Nonsense_Mutation p.W143* 0.12 TCGA-BR-8381-01 5 140501880 140501880 G A PCDHB4 Silent p.P100P 0.11 TCGA-BR-8381-01 5 156565878 156565878 T C MED7 Missense_Mutation p.M189V 0.17 tolerated(0.29) benign(0.003) TCGA-BR-8381-01 5 176523169 176523169 A G FGFR4 Missense_Mutation p.K645E 0.11 deleterious(0) probably_damaging(0.998) TCGA-BR-8381-01 5 23524471 23524471 G C PRDM9 Missense_Mutation p.E327Q 0.09 deleterious(0.03) benign(0.134) TCGA-BR-8381-01 5 23527567 23527567 C A PRDM9 Missense_Mutation p.N790K 0.04 tolerated(0.13) unknown(0) TCGA-BR-8381-01 5 33937051 33937051 G T RXFP3 Missense_Mutation p.G69V 0.14 tolerated(0.06) benign(0.002) TCGA-BR-8381-01 5 41762218 41762218 C T OXCT1 Missense_Mutation p.A445T 0.15 tolerated(0.95) benign(0.121) TCGA-BR-8381-01 5 94224655 94224655 T C MCTP1 Missense_Mutation p.N621S 0.12 deleterious(0.03) benign(0.222) TCGA-BR-8381-01 6 110300581 110300581 A G GPR6 Missense_Mutation p.E89G 0.15 deleterious(0.01) probably_damaging(0.992) TCGA-BR-8381-01 6 132176074 132176074 C T ENPP1 Missense_Mutation p.T209M 0.06 tolerated(0.12) benign(0.004) TCGA-BR-8381-01 6 145119080 145119080 C A UTRN Missense_Mutation p.Q3067K 0.11 deleterious(0) probably_damaging(0.996) TCGA-BR-8381-01 6 27879418 27879418 C T OR2B2 Missense_Mutation p.R227K 0.15 tolerated(0.42) benign(0.06) TCGA-BR-8381-01 6 27879505 27879505 T G OR2B2 Missense_Mutation p.E198A 0.10 tolerated(0.11) possibly_damaging(0.866) TCGA-BR-8381-01 6 28963041 28963041 C T ZNF311 Missense_Mutation p.E580K 0.05 deleterious(0.02) probably_damaging(0.999) TCGA-BR-8381-01 6 38810483 38810483 T G DNAH8 Missense_Mutation p.L1333W 0.09 probably_damaging(0.926) TCGA-BR-8381-01 6 76596581 76596581 T G MYO6 Missense_Mutation p.V843G 0.05 deleterious(0) unknown(0) TCGA-BR-8381-01 6 90097256 90097256 T C RRAGD Missense_Mutation p.M68V 0.11 deleterious(0) possibly_damaging(0.815) TCGA-BR-8381-01 6 90428148 90428148 G C MDN1 Missense_Mutation p.L2174V 0.06 benign(0.094) TCGA-BR-8381-01 7 100684303 100684303 T G MUC17 Silent p.T3202T 0.11 TCGA-BR-8381-01 7 116166604 116166604 G A CAV1 Missense_Mutation p.R19Q 0.08 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-BR-8381-01 7 117876121 117876121 C T ANKRD7 Silent p.A165A 0.10 TCGA-BR-8381-01 7 129962450 129962450 C G CPA4 Silent p.P400P 0.05 TCGA-BR-8381-01 7 132990651 132990651 G A EXOC4 Silent p.L164L 0.09 TCGA-BR-8381-01 7 150932532 150932532 G A CHPF2 Missense_Mutation p.R221Q 0.07 deleterious(0.03) benign(0.004) TCGA-BR-8381-01 7 22197496 22197496 C T RAPGEF5 Missense_Mutation p.D359N 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-BR-8381-01 7 2402282 2402282 A G EIF3B Missense_Mutation p.Y232C 0.07 deleterious(0) probably_damaging(0.977) TCGA-BR-8381-01 7 28857755 28857755 G T CREB5 Missense_Mutation p.C441F 0.08 deleterious(0) unknown(0) TCGA-BR-8381-01 7 635929 635929 C T PRKAR1B Missense_Mutation p.G188R 0.09 deleterious(0.02) possibly_damaging(0.503) TCGA-BR-8381-01 8 120758995 120758995 C T TAF2 Missense_Mutation p.A1020T 0.04 tolerated_low_confidence(0.58) benign(0) TCGA-BR-8381-01 8 139833571 139833571 G A COL22A1 Silent p.F351F 0.15 TCGA-BR-8381-01 8 142517308 142517308 G T MROH5 5'UTR 0.24 TCGA-BR-8381-01 8 15978038 15978038 A T MSR1 Missense_Mutation p.W371R 0.07 deleterious(0.01) probably_damaging(1) TCGA-BR-8381-01 8 22102541 22102541 C T POLR3D 5'Flank 0.19 TCGA-BR-8381-01 8 51449257 51449257 C T SNTG1 Missense_Mutation p.S190L 0.14 deleterious(0) probably_damaging(0.963) TCGA-BR-8381-01 8 92330586 92330586 C A SLC26A7 Missense_Mutation p.S207Y 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8381-01 8 99440584 99440584 G A KCNS2 Missense_Mutation p.R126H 0.06 deleterious(0) probably_damaging(0.987) TCGA-BR-8381-01 9 119976958 119976958 G A ASTN2 Missense_Mutation p.R232C 0.13 deleterious_low_confidence(0) unknown(0) TCGA-BR-8381-01 9 139336112 139336112 C A SEC16A 3'UTR 0.17 TCGA-BR-8381-01 9 139369132 139369132 T C SEC16A Missense_Mutation p.N979S 0.14 tolerated(0.28) benign(0.007) TCGA-BR-8381-01 9 140508451 140508451 C T ARRDC1 Intron 0.22 TCGA-BR-8381-01 9 17795588 17795588 A T SH3GL2 Missense_Mutation p.E302D 0.17 tolerated(0.33) benign(0.009) TCGA-BR-8381-01 9 32457294 32457294 G C DDX58 Missense_Mutation p.N868K 0.09 tolerated(0.11) benign(0.001) TCGA-BR-8381-01 9 34993304 34993304 G A DNAJB5 Missense_Mutation p.R139Q 0.12 deleterious(0) probably_damaging(0.996) TCGA-BR-8381-01 9 87342847 87342847 T A NTRK2 Missense_Mutation p.F378I 0.06 deleterious(0) probably_damaging(0.999) TCGA-BR-8381-01 9 96021401 96021401 G A WNK2 Silent p.Q857Q 0.17 TCGA-BR-8381-01 X 107412792 107412792 T C COL4A6 Silent p.K1209K 0.31 TCGA-BR-8381-01 X 129339386 129339386 G T ZNF280C Silent p.G682G 0.34 TCGA-BR-8381-01 X 1522378 1522378 G A ASMTL Silent p.A550A 0.12 TCGA-BR-8381-01 X 153640348 153640348 G C TAZ Intron 0.45 TCGA-BR-8381-01 X 3227994 3227994 G A MXRA5 Silent p.T2750T 0.37 TCGA-BR-8381-01 X 40506466 40506466 C A CXorf38 Intron 0.20 TCGA-BR-8381-01 X 49855541 49855541 C T CLCN5 Silent p.N786N 0.14 TCGA-BR-8381-01 X 53661171 53661186 CCCAAAGAGTTACTTA - HUWE1 Splice_Site p.X189_splice 0.25 TCGA-BR-8382-01 10 102732747 102732747 G A SEMA4G Silent p.P26P 0.20 TCGA-BR-8382-01 10 106401696 106401696 C T SORCS3 Missense_Mutation p.S204L 0.21 deleterious(0.03) benign(0.181) TCGA-BR-8382-01 10 112257938 112257938 C T DUSP5 Missense_Mutation p.A20V 0.17 tolerated(0.16) benign(0.013) TCGA-BR-8382-01 10 115804478 115804478 T C ADRB1 Missense_Mutation p.M196T 0.22 deleterious(0.01) possibly_damaging(0.883) TCGA-BR-8382-01 10 118228695 118228695 A G PNLIPRP3 Splice_Site p.X310_splice 0.17 TCGA-BR-8382-01 10 118969223 118969223 C A KCNK18 Missense_Mutation p.P190T 0.13 tolerated(0.16) benign(0.001) TCGA-BR-8382-01 10 125514247 125514248 TC - CPXM2 Frame_Shift_Del p.D650Ffs*17 0.15 TCGA-BR-8382-01 10 125769827 125769827 C A CHST15 Missense_Mutation p.L508F 0.19 deleterious(0.05) possibly_damaging(0.86) TCGA-BR-8382-01 10 127491579 127491579 C A UROS Intron 0.11 TCGA-BR-8382-01 10 128973966 128973966 G T FAM196A Silent p.R232R 0.12 TCGA-BR-8382-01 10 134752167 134752167 G - TTC40 Frame_Shift_Del p.S155Afs*6 0.19 TCGA-BR-8382-01 10 17126369 17126369 G A CUBN Silent p.C734C 0.10 TCGA-BR-8382-01 10 27024408 27024408 T C PDSS1 Missense_Mutation p.V309A 0.20 deleterious(0.04) possibly_damaging(0.902) TCGA-BR-8382-01 10 31608218 31608218 A G ZEB1 Missense_Mutation p.N19D 0.21 deleterious(0.05) benign(0.341) TCGA-BR-8382-01 10 32324901 32324901 C A KIF5B Missense_Mutation p.G245C 0.13 deleterious(0) probably_damaging(1) TCGA-BR-8382-01 10 33214866 33214866 C T ITGB1 Missense_Mutation p.R240H 0.14 tolerated(0.58) benign(0.005) TCGA-BR-8382-01 10 35855055 35855055 C T CCNY Missense_Mutation p.A284V 0.21 tolerated(0.11) benign(0.221) TCGA-BR-8382-01 10 43089480 43089480 A G ZNF33B Silent p.S306S 0.07 TCGA-BR-8382-01 10 43882176 43882176 T G HNRNPF Missense_Mutation p.Q386P 0.16 tolerated(0.05) benign(0.003) TCGA-BR-8382-01 10 46961759 46961759 G A SYT15 3'Flank 0.24 TCGA-BR-8382-01 10 47000005 47000005 G A GPRIN2 Silent p.V375V 0.09 TCGA-BR-8382-01 10 47087826 47087826 A G NPY4R Missense_Mutation p.E348G 0.08 tolerated(0.07) benign(0.013) TCGA-BR-8382-01 10 48382208 48382208 C T RBP3 Silent p.T1147T 0.10 TCGA-BR-8382-01 10 50819083 50819083 G A SLC18A3 Silent p.A99A 0.18 TCGA-BR-8382-01 10 60573605 60573605 C T BICC1 Missense_Mutation p.L798F 0.22 tolerated(0.15) probably_damaging(0.999) TCGA-BR-8382-01 10 61011287 61011287 A G FAM13C Intron 0.15 TCGA-BR-8382-01 10 6146944 6146944 T G RBM17 Silent p.A97A 0.13 TCGA-BR-8382-01 10 61833539 61833539 C T ANK3 Missense_Mutation p.R2367Q 0.14 benign(0.039) TCGA-BR-8382-01 10 68280472 68280472 G A CTNNA3 Silent p.T478T 0.20 TCGA-BR-8382-01 10 70097169 70097169 C A HNRNPH3 Intron 0.18 TCGA-BR-8382-01 10 70509303 70509303 C T CCAR1 Missense_Mutation p.R327C 0.23 deleterious(0.01) probably_damaging(0.929) TCGA-BR-8382-01 10 70863692 70863692 T C SRGN Missense_Mutation p.F98S 0.16 tolerated(1) benign(0) TCGA-BR-8382-01 10 73767393 73767393 G A CHST3 Missense_Mutation p.V202M 0.17 tolerated(0.23) possibly_damaging(0.542) TCGA-BR-8382-01 10 73826724 73826724 G T SPOCK2 Silent p.S288S 0.10 TCGA-BR-8382-01 10 74100601 74100601 G A DNAJB12 Silent p.G257G 0.22 TCGA-BR-8382-01 10 75606993 75606993 G T CAMK2G Missense_Mutation p.P270Q 0.17 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-BR-8382-01 10 79601948 79601948 A - DLG5 Frame_Shift_Del p.F376Lfs*8 0.16 TCGA-BR-8382-01 10 82331221 82331221 C T SH2D4B Missense_Mutation p.R128W 0.23 deleterious(0.02) probably_damaging(0.994) TCGA-BR-8382-01 10 90591666 90591666 C T ANKRD22 Missense_Mutation p.A47T 0.13 deleterious(0) probably_damaging(0.994) TCGA-BR-8382-01 10 91178104 91178104 G A IFIT5 Missense_Mutation p.G383D 0.11 deleterious(0.01) probably_damaging(0.983) TCGA-BR-8382-01 10 93756247 93756247 T - BTAF1 Frame_Shift_Del p.L1146Wfs*27 0.20 TCGA-BR-8382-01 10 98469337 98469337 T - PIK3AP1 Frame_Shift_Del p.A140Pfs*33 0.18 TCGA-BR-8382-01 10 98744071 98744071 G A C10orf12 Missense_Mutation p.S975N 0.18 tolerated(0.19) benign(0.009) TCGA-BR-8382-01 10 98766411 98766411 G A SLIT1 Silent p.C1136C 0.14 TCGA-BR-8382-01 10 99229436 99229437 - A MMS19 Frame_Shift_Ins p.L298Pfs*18 0.16 TCGA-BR-8382-01 11 1015989 1015989 G A MUC6 Missense_Mutation p.S2271L 0.13 benign(0.007) TCGA-BR-8382-01 11 103908053 103908053 C T DDI1 Missense_Mutation p.A168V 0.12 deleterious(0) possibly_damaging(0.791) TCGA-BR-8382-01 11 108004588 108004588 T - ACAT1 Frame_Shift_Del p.L56* 0.17 TCGA-BR-8382-01 11 113813714 113813714 G A HTR3B Missense_Mutation p.R236H 0.20 deleterious(0) probably_damaging(0.999) TCGA-BR-8382-01 11 114453511 114453511 G A NXPE4 Missense_Mutation p.T110M 0.20 deleterious(0.01) probably_damaging(0.965) TCGA-BR-8382-01 11 118773280 118773280 C T BCL9L Missense_Mutation p.R391H 0.14 possibly_damaging(0.813) TCGA-BR-8382-01 11 118942398 118942398 G T VPS11 Missense_Mutation p.Q242H 0.13 tolerated(0.12) probably_damaging(0.983) TCGA-BR-8382-01 11 119206740 119206740 G A RNF26 Missense_Mutation p.R303Q 0.17 tolerated(0.21) benign(0.022) TCGA-BR-8382-01 11 124824758 124824758 G A CCDC15 Missense_Mutation p.A44T 0.07 deleterious(0) probably_damaging(0.981) TCGA-BR-8382-01 11 125647271 125647271 G A PATE2 3'UTR 0.15 TCGA-BR-8382-01 11 128840482 128840482 G T ARHGAP32 Silent p.A1528A 0.18 TCGA-BR-8382-01 11 12901216 12901216 C T TEAD1 Intron 0.27 TCGA-BR-8382-01 11 13402723 13402723 G A ARNTL Silent p.S512S 0.19 TCGA-BR-8382-01 11 17794248 17794248 C - KCNC1 Intron 0.14 TCGA-BR-8382-01 11 1972219 1972219 C T MRPL23 Silent p.P36P 0.22 TCGA-BR-8382-01 11 20515731 20515731 C T PRMT3 Missense_Mutation p.P473S 0.10 probably_damaging(0.997) TCGA-BR-8382-01 11 27680043 27680043 T C BDNF Silent p.E105E 0.15 TCGA-BR-8382-01 11 299306 299306 T C IFITM5 Missense_Mutation p.K62R 0.27 deleterious(0) probably_damaging(0.996) TCGA-BR-8382-01 11 31823109 31823109 G A PAX6 Silent p.S133S 0.17 TCGA-BR-8382-01 11 33127404 33127404 A - CSTF3 Intron 0.39 TCGA-BR-8382-01 11 418410 418410 G T ANO9 Silent p.T770T 0.17 TCGA-BR-8382-01 11 4621796 4621796 G - TRIM68 Frame_Shift_Del p.H390Tfs*6 0.19 TCGA-BR-8382-01 11 498110 498110 A G RNH1 Missense_Mutation p.C330R 0.10 deleterious(0) probably_damaging(1) TCGA-BR-8382-01 11 5529402 5529402 A G UBQLN3 Missense_Mutation p.S463P 0.23 deleterious(0.01) possibly_damaging(0.723) TCGA-BR-8382-01 11 55322544 55322544 C A OR4C15 Silent p.I254I 0.17 TCGA-BR-8382-01 11 55761467 55761467 A C OR5F1 Missense_Mutation p.L212R 0.23 deleterious(0) probably_damaging(0.954) TCGA-BR-8382-01 11 56237279 56237279 C A OR5M3 Missense_Mutation p.R232M 0.12 deleterious(0) probably_damaging(0.996) TCGA-BR-8382-01 11 57068391 57068391 A G TNKS1BP1 Missense_Mutation p.L1699P 0.14 tolerated(0.08) probably_damaging(0.999) TCGA-BR-8382-01 11 57080070 57080070 C T TNKS1BP1 Missense_Mutation p.G698S 0.18 tolerated(1) benign(0.002) TCGA-BR-8382-01 11 57569533 57569533 T C CTNND1 Missense_Mutation p.C429R 0.18 deleterious(0) probably_damaging(1) TCGA-BR-8382-01 11 58711066 58711066 G A GLYATL1 Silent p.A25A 0.11 TCGA-BR-8382-01 11 62064988 62064988 G A SCGB1D4 Silent p.T66T 0.13 TCGA-BR-8382-01 11 62348879 62348881 CCT - TUT1 In_Frame_Del p.E227del 0.18 TCGA-BR-8382-01 11 62361871 62361871 C T MTA2 Silent p.G567G 0.15 TCGA-BR-8382-01 11 62455768 62455768 G A LRRN4CL Silent p.C71C 0.23 TCGA-BR-8382-01 11 6260939 6260939 G A CNGA4 Missense_Mutation p.G64S 0.14 tolerated(0.81) benign(0) TCGA-BR-8382-01 11 64336156 64336156 C T SLC22A11 Missense_Mutation p.R430C 0.18 tolerated(0.12) possibly_damaging(0.597) TCGA-BR-8382-01 11 64603009 64603009 C T CDC42BPG Missense_Mutation p.A615T 0.18 tolerated(0.52) benign(0.003) TCGA-BR-8382-01 11 64606620 64606620 C T CDC42BPG Missense_Mutation p.G254D 0.16 deleterious(0) probably_damaging(1) TCGA-BR-8382-01 11 64665575 64665575 C A ATG2A Missense_Mutation p.G1614V 0.19 tolerated(0.38) benign(0) TCGA-BR-8382-01 11 65365879 65365879 T G MAP3K11 Silent p.S809S 0.12 TCGA-BR-8382-01 11 65396109 65396109 T G PCNXL3 Missense_Mutation p.I1249S 0.19 deleterious(0) probably_damaging(0.987) TCGA-BR-8382-01 11 65481995 65481995 G A KAT5 Silent p.P240P 0.21 TCGA-BR-8382-01 11 65655490 65655490 C T FIBP Missense_Mutation p.E67K 0.27 deleterious(0) probably_damaging(0.999) TCGA-BR-8382-01 11 65827423 65827423 G A SF3B2 Silent p.L524L 0.14 TCGA-BR-8382-01 11 6589805 6589805 A G DNHD1 Silent p.P4220P 0.11 TCGA-BR-8382-01 11 67018078 67018078 A G KDM2A Silent p.E859E 0.28 TCGA-BR-8382-01 11 67201891 67201891 G A RPS6KB2 Missense_Mutation p.R364Q 0.23 tolerated(0.12) benign(0.059) TCGA-BR-8382-01 11 67564234 67564234 C T FAM86C2P RNA 0.11 TCGA-BR-8382-01 11 71718403 71718403 G - NUMA1 Frame_Shift_Del p.K1766Rfs*2 0.09 TCGA-BR-8382-01 11 7530851 7530851 A G OLFML1 Missense_Mutation p.Q214R 0.21 tolerated(0.12) benign(0.214) TCGA-BR-8382-01 11 76938960 76938960 G A GDPD4 Missense_Mutation p.R492W 0.22 tolerated(1) benign(0) TCGA-BR-8382-01 11 774114 774114 C A PDDC1 Splice_Site p.X48_splice 0.16 TCGA-BR-8382-01 11 77885448 77885448 A C KCTD21 Silent p.R51R 0.26 TCGA-BR-8382-01 11 7982583 7982583 G A NLRP10 Silent p.T192T 0.09 TCGA-BR-8382-01 11 8009136 8009136 T C EIF3F Silent p.G79G 0.21 TCGA-BR-8382-01 11 8720766 8720766 C A ST5 Silent p.V964V 0.16 TCGA-BR-8382-01 11 94320238 94320238 G A PIWIL4 Missense_Mutation p.A247T 0.15 tolerated(0.74) benign(0.001) TCGA-BR-8382-01 11 9459747 9459747 C T IPO7 Silent p.N870N 0.16 TCGA-BR-8382-01 11 95564332 95564332 A - CEP57 Frame_Shift_Del p.R474Gfs*8 0.19 TCGA-BR-8382-01 12 10278042 10278042 G T CLEC7A Missense_Mutation p.L116I 0.12 tolerated(0.06) benign(0.001) TCGA-BR-8382-01 12 103246714 103246714 G A PAH Missense_Mutation p.R241C 0.20 tolerated(0.05) benign(0.375) TCGA-BR-8382-01 12 10339021 10339021 T C TMEM52B Missense_Mutation p.L27S 0.19 deleterious(0) probably_damaging(0.999) TCGA-BR-8382-01 12 108004005 108004005 C T BTBD11 Missense_Mutation p.A561V 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8382-01 12 10865891 10865891 A G YBX3 Silent p.P164P 0.13 TCGA-BR-8382-01 12 109017883 109017883 A C SELPLG Silent p.T83T 0.16 TCGA-BR-8382-01 12 109286789 109286789 C T DAO Missense_Mutation p.R162W 0.09 deleterious(0) benign(0.163) TCGA-BR-8382-01 12 109998868 109998868 G A MMAB Silent p.A187A 0.15 TCGA-BR-8382-01 12 110461908 110461908 C T ANKRD13A Silent p.Y264Y 0.18 TCGA-BR-8382-01 12 115114185 115114185 T C TBX3 Silent p.A344A 0.18 TCGA-BR-8382-01 12 122468634 122468634 A G BCL7A Missense_Mutation p.T41A 0.13 deleterious(0) probably_damaging(0.928) TCGA-BR-8382-01 12 123810761 123810761 A G SBNO1 Missense_Mutation p.C605R 0.17 deleterious(0) probably_damaging(0.999) TCGA-BR-8382-01 12 124409684 124409684 C T DNAH10 Missense_Mutation p.R3834C 0.11 probably_damaging(1) TCGA-BR-8382-01 12 133438121 133438121 G A CHFR Missense_Mutation p.A240V 0.16 tolerated(0.1) benign(0.01) TCGA-BR-8382-01 12 13715638 13715638 G A GRIN2B 3'UTR 0.13 TCGA-BR-8382-01 12 14954349 14954349 A - WBP11 5'UTR 0.21 TCGA-BR-8382-01 12 16753742 16753742 C T LMO3 Missense_Mutation p.R18Q 0.22 tolerated(0.3) benign(0.019) TCGA-BR-8382-01 12 21965082 21965082 A G ABCC9 Missense_Mutation p.V1371A 0.18 deleterious(0.04) benign(0.209) TCGA-BR-8382-01 12 22213771 22213771 A - CMAS Frame_Shift_Del p.M235Wfs*14 0.24 TCGA-BR-8382-01 12 33030839 33030839 G A PKP2 Silent p.A325A 0.18 TCGA-BR-8382-01 12 42499815 42499816 - A GXYLT1 Frame_Shift_Ins p.L223Ffs*5 0.20 TCGA-BR-8382-01 12 48141517 48141517 G T RAPGEF3 Missense_Mutation p.P484H 0.17 deleterious(0.03) benign(0.072) TCGA-BR-8382-01 12 49177036 49177036 G - ADCY6 Frame_Shift_Del p.P61Lfs*36 0.15 TCGA-BR-8382-01 12 49445500 49445500 G - KMT2D Frame_Shift_Del p.L656Cfs*274 0.23 TCGA-BR-8382-01 12 49504458 49504458 C T LMBR1L 5'UTR 0.27 TCGA-BR-8382-01 12 50048048 50048048 G A FMNL3 Missense_Mutation p.S333L 0.22 deleterious(0) probably_damaging(0.927) TCGA-BR-8382-01 12 50869646 50869646 A - LARP4 Frame_Shift_Del 0.09 TCGA-BR-8382-01 12 51461619 51461619 C T CSRNP2 Missense_Mutation p.R182Q 0.19 tolerated(0.35) benign(0.151) TCGA-BR-8382-01 12 53818998 53818998 C G AMHR2 Silent p.L158L 0.09 TCGA-BR-8382-01 12 5603748 5603748 A G NTF3 Missense_Mutation p.Y136C 0.19 tolerated(0.07) benign(0.157) TCGA-BR-8382-01 12 56094925 56094925 C T ITGA7 Missense_Mutation p.R143Q 0.22 deleterious(0.02) possibly_damaging(0.617) TCGA-BR-8382-01 12 56478854 56478854 G A ERBB3 Missense_Mutation p.V104M 0.14 deleterious(0.05) possibly_damaging(0.789) TCGA-BR-8382-01 12 56487212 56487212 G A ERBB3 Missense_Mutation p.R453H 0.14 tolerated(0.06) possibly_damaging(0.859) TCGA-BR-8382-01 12 56704287 56704287 T C CNPY2 3'UTR 0.12 TCGA-BR-8382-01 12 57115159 57115159 G A NACA Missense_Mutation p.A52V 0.15 tolerated_low_confidence(0.07) possibly_damaging(0.682) TCGA-BR-8382-01 12 57869299 57869299 G A ARHGAP9 Missense_Mutation p.P471S 0.13 tolerated(0.31) benign(0.04) TCGA-BR-8382-01 12 58001201 58001201 C T DTX3 Silent p.C185C 0.17 TCGA-BR-8382-01 12 6619795 6619795 T C NCAPD2 Missense_Mutation p.V88A 0.17 tolerated(0.08) benign(0.414) TCGA-BR-8382-01 12 72026034 72026034 A C ZFC3H1 Silent p.T1026T 0.13 TCGA-BR-8382-01 12 7526069 7526069 T C CD163L1 Missense_Mutation p.S1193G 0.21 tolerated(0.06) benign(0.013) TCGA-BR-8382-01 12 78531042 78531042 C T NAV3 Silent p.F1509F 0.14 TCGA-BR-8382-01 12 8245509 8245509 T C NECAP1 Silent p.T178T 0.17 TCGA-BR-8382-01 12 82750907 82750907 G A CCDC59 Missense_Mutation p.A99V 0.20 deleterious(0) possibly_damaging(0.844) TCGA-BR-8382-01 12 91546948 91546948 G A DCN Missense_Mutation p.T224M 0.15 tolerated(0.21) possibly_damaging(0.623) TCGA-BR-8382-01 12 93148041 93148041 G A PLEKHG7 Splice_Site p.X164_splice 0.26 TCGA-BR-8382-01 12 94563012 94563012 C T PLXNC1 Silent p.T382T 0.19 TCGA-BR-8382-01 12 977715 977715 A G WNK1 Intron 0.19 TCGA-BR-8382-01 13 103288709 103288709 G A TPP2 Missense_Mutation p.V549I 0.30 tolerated(0.32) possibly_damaging(0.509) TCGA-BR-8382-01 13 103459756 103459756 C T BIVM-ERCC5 Missense_Mutation p.P19S 0.11 tolerated_low_confidence(0.52) probably_damaging(0.932) TCGA-BR-8382-01 13 113742894 113742894 C T MCF2L Missense_Mutation p.A929V 0.29 tolerated(0.26) benign(0.001) TCGA-BR-8382-01 13 113812986 113812986 C T PROZ Silent p.C4C 0.36 TCGA-BR-8382-01 13 113979911 113979911 C - GRTP1 Intron 0.22 TCGA-BR-8382-01 13 114535732 114535732 C T GAS6 Intron 0.13 TCGA-BR-8382-01 13 115037720 115037720 A - CDC16 Frame_Shift_Del p.N557Tfs*14 0.27 TCGA-BR-8382-01 13 21417071 21417071 G A XPO4 Silent p.A230A 0.22 TCGA-BR-8382-01 13 23915417 23915417 T - SACS Frame_Shift_Del p.K866Nfs*14 0.22 TCGA-BR-8382-01 13 28866563 28866563 T C PAN3 Silent p.D856D 0.32 TCGA-BR-8382-01 13 29600668 29600668 G A MTUS2 Silent p.S621S 0.20 TCGA-BR-8382-01 13 32526924 32526924 G A EEF1DP3 RNA 0.20 TCGA-BR-8382-01 13 33701564 33701564 C T STARD13 Missense_Mutation p.R623H 0.23 deleterious(0.01) probably_damaging(0.957) TCGA-BR-8382-01 13 38164611 38164611 C T POSTN Silent p.T113T 0.25 TCGA-BR-8382-01 13 38357396 38357396 T C TRPC4 Silent p.A25A 0.31 TCGA-BR-8382-01 13 46287396 46287396 G A SPERT Missense_Mutation p.R79Q 0.11 deleterious_low_confidence(0.02) probably_damaging(0.939) TCGA-BR-8382-01 13 46542002 46542002 G A ZC3H13 Nonsense_Mutation p.Q1320* 0.24 TCGA-BR-8382-01 13 52518300 52518300 G A ATP7B Missense_Mutation p.A1063V 0.29 deleterious(0) probably_damaging(1) TCGA-BR-8382-01 13 52863992 52863992 A - RP11-248G5.8 RNA 0.18 TCGA-BR-8382-01 13 53216744 53216744 G A HNRNPA1L2 Silent p.T39T 0.11 TCGA-BR-8382-01 13 58299326 58299326 G T PCDH17 Missense_Mutation p.R1126S 0.20 deleterious_low_confidence(0.01) benign(0.026) TCGA-BR-8382-01 13 86368486 86368486 T G SLITRK6 Missense_Mutation p.S720R 0.05 tolerated(0.11) possibly_damaging(0.642) TCGA-BR-8382-01 13 88330473 88330473 G A SLITRK5 Missense_Mutation p.D944N 0.26 deleterious(0.01) probably_damaging(1) TCGA-BR-8382-01 13 95364182 95364182 C T SOX21 Missense_Mutation p.R41H 0.13 deleterious(0) possibly_damaging(0.874) TCGA-BR-8382-01 13 96205057 96205057 G T CLDN10 Missense_Mutation p.G17V 0.13 deleterious(0) probably_damaging(0.99) TCGA-BR-8382-01 13 99093014 99093014 G A FARP1 Missense_Mutation p.R907H 0.12 tolerated(0.07) possibly_damaging(0.581) TCGA-BR-8382-01 14 100191749 100191749 C T CYP46A1 Missense_Mutation p.R400W 0.12 deleterious(0) probably_damaging(1) TCGA-BR-8382-01 14 100377791 100377791 G A EML1 Missense_Mutation p.A477T 0.16 deleterious(0.02) benign(0.169) TCGA-BR-8382-01 14 104026528 104026528 T - BAG5 Frame_Shift_Del p.N366Tfs*12 0.17 TCGA-BR-8382-01 14 104206305 104206305 C T PPP1R13B Silent p.P816P 0.19 TCGA-BR-8382-01 14 105178835 105178835 G A INF2 Missense_Mutation p.R852Q 0.15 tolerated(0.14) unknown(0) TCGA-BR-8382-01 14 105353081 105353081 C T CEP170B Silent p.G835G 0.12 TCGA-BR-8382-01 14 105409804 105409804 G A AHNAK2 Missense_Mutation p.A3995V 0.14 benign(0.08) TCGA-BR-8382-01 14 106053635 106053635 G A IGHA2 Missense_Mutation p.P221L 0.11 deleterious(0) probably_damaging(0.999) TCGA-BR-8382-01 14 106173866 106173866 G A IGHA1 Missense_Mutation p.P234L 0.10 deleterious(0) probably_damaging(0.998) TCGA-BR-8382-01 14 106208301 106208301 T G IGHG1 Missense_Mutation p.K200T 0.16 tolerated(0.06) probably_damaging(0.972) TCGA-BR-8382-01 14 107170112 107170112 C T IGHV1-69 Missense_Mutation p.R57Q 0.15 tolerated(0.15) benign(0.175) TCGA-BR-8382-01 14 21623694 21623694 T C OR5AU1 Missense_Mutation p.Y164C 0.19 deleterious(0.01) possibly_damaging(0.817) TCGA-BR-8382-01 14 23886806 23886806 C A MYH7 Missense_Mutation p.R1420L 0.18 deleterious(0.01) probably_damaging(1) TCGA-BR-8382-01 14 23945486 23945486 C T NGDN Nonsense_Mutation p.R195* 0.23 TCGA-BR-8382-01 14 24656743 24656743 C T IPO4 Missense_Mutation p.E151K 0.16 deleterious(0.01) benign(0.159) TCGA-BR-8382-01 14 24780905 24780905 G - LTB4R2 Frame_Shift_Del p.G347Vfs*47 0.18 TCGA-BR-8382-01 14 30047479 30047479 A G PRKD1 Splice_Site p.X840_splice 0.24 TCGA-BR-8382-01 14 31592134 31592134 A G HECTD1 Missense_Mutation p.Y1701H 0.09 tolerated(0.07) possibly_damaging(0.86) TCGA-BR-8382-01 14 31619373 31619373 A G HECTD1 Missense_Mutation p.W663R 0.19 deleterious(0) probably_damaging(0.998) TCGA-BR-8382-01 14 31856542 31856542 G A HEATR5A Silent p.L32L 0.20 TCGA-BR-8382-01 14 36004422 36004422 G A INSM2 Missense_Mutation p.A322T 0.16 tolerated(0.28) benign(0.005) TCGA-BR-8382-01 14 51561212 51561212 C T TRIM9 Missense_Mutation p.R149H 0.14 deleterious(0) probably_damaging(0.943) TCGA-BR-8382-01 14 55203855 55203855 C T SAMD4A Nonsense_Mutation p.R277* 0.18 TCGA-BR-8382-01 14 58038711 58038711 G A SLC35F4 Silent p.T314T 0.25 TCGA-BR-8382-01 14 60585059 60585059 C T PCNXL4 Missense_Mutation p.R297C 0.27 deleterious(0.04) benign(0.033) TCGA-BR-8382-01 14 61439000 61439000 G A TRMT5 3'UTR 0.17 TCGA-BR-8382-01 14 63269210 63269210 C T KCNH5 Silent p.L553L 0.10 TCGA-BR-8382-01 14 64749567 64749567 A G ESR2 Missense_Mutation p.M46T 0.14 tolerated(0.11) benign(0.053) TCGA-BR-8382-01 14 70237232 70237232 G A SRSF5 Missense_Mutation p.A139T 0.22 deleterious(0.03) probably_damaging(0.951) TCGA-BR-8382-01 14 70990808 70990808 A G ADAM20 Missense_Mutation p.S273P 0.14 tolerated(0.2) possibly_damaging(0.6) TCGA-BR-8382-01 14 73422258 73422258 T C DCAF4 Missense_Mutation p.S345P 0.12 deleterious(0.04) possibly_damaging(0.452) TCGA-BR-8382-01 14 75265236 75265236 G A YLPM1 Missense_Mutation p.R1079Q 0.17 probably_damaging(0.975) TCGA-BR-8382-01 14 75614415 75614415 G A TMED10 Silent p.L121L 0.19 TCGA-BR-8382-01 14 76156622 76156622 C - TTLL5 Frame_Shift_Del p.Q155Rfs*24 0.12 TCGA-BR-8382-01 14 91044549 91044549 G A TTC7B Silent p.G737G 0.19 TCGA-BR-8382-01 14 91196513 91196513 T C TTC7B Missense_Mutation p.S202G 0.22 tolerated(0.32) benign(0.015) TCGA-BR-8382-01 14 93412766 93412766 G A ITPK1 Nonsense_Mutation p.Q271* 0.10 TCGA-BR-8382-01 14 95053821 95053821 C - SERPINA5 Frame_Shift_Del p.S43Afs*28 0.20 TCGA-BR-8382-01 14 95786068 95786068 A G CLMN Missense_Mutation p.I21T 0.14 deleterious(0.01) possibly_damaging(0.697) TCGA-BR-8382-01 14 96730468 96730468 G A BDKRB1 Missense_Mutation p.R150Q 0.20 tolerated(0.16) benign(0.131) TCGA-BR-8382-01 14 99641328 99641328 G A BCL11B Silent p.A615A 0.26 TCGA-BR-8382-01 15 25444530 25444530 T C SNORD115-14 3'Flank 0.07 TCGA-BR-8382-01 15 42180139 42180139 T C SPTBN5 Missense_Mutation p.I216V 0.12 benign(0.441) TCGA-BR-8382-01 15 44058951 44058951 C A PDIA3 Missense_Mutation p.L291M 0.21 tolerated(0.1) possibly_damaging(0.639) TCGA-BR-8382-01 15 44175999 44175999 A G FRMD5 Missense_Mutation p.M346T 0.11 tolerated(0.45) benign(0.012) TCGA-BR-8382-01 15 45003781 45003782 CT - B2M Frame_Shift_Del p.L15Ffs*41 0.21 TCGA-BR-8382-01 15 45007834 45007834 A - B2M Frame_Shift_Del p.D96Mfs*7 0.17 TCGA-BR-8382-01 15 48703398 48703398 C T FBN1 Missense_Mutation p.G2802D 0.21 possibly_damaging(0.814) TCGA-BR-8382-01 15 49254719 49254719 A C SHC4 Missense_Mutation p.L165R 0.11 tolerated(0.48) benign(0.006) TCGA-BR-8382-01 15 50733661 50733661 A - USP8 Frame_Shift_Del p.R76Dfs*36 0.26 TCGA-BR-8382-01 15 52668649 52668649 C T MYO5A Missense_Mutation p.R772Q 0.14 tolerated(0.16) possibly_damaging(0.501) TCGA-BR-8382-01 15 53049695 53049695 A - ONECUT1 3'UTR 0.09 TCGA-BR-8382-01 15 56968927 56968927 A C ZNF280D Missense_Mutation p.F451V 0.15 deleterious(0) possibly_damaging(0.867) TCGA-BR-8382-01 15 60741267 60741267 T - NARG2 Frame_Shift_Del p.K633Nfs*17 0.13 TCGA-BR-8382-01 15 63029211 63029211 G A TLN2 Missense_Mutation p.A1165T 0.28 tolerated(0.17) benign(0.003) TCGA-BR-8382-01 15 64686218 64686218 A - TRIP4 Frame_Shift_Del p.G61Vfs*4 0.15 TCGA-BR-8382-01 15 65273318 65273318 C T SPG21 Missense_Mutation p.A37T 0.22 tolerated(0.41) benign(0.08) TCGA-BR-8382-01 15 66262946 66262946 G A MEGF11 Nonsense_Mutation p.Q282* 0.22 TCGA-BR-8382-01 15 66850103 66850103 G T LCTL Silent p.P293P 0.07 TCGA-BR-8382-01 15 68479955 68479955 T - PIAS1 Frame_Shift_Del p.F581Sfs*13 0.16 TCGA-BR-8382-01 15 73622033 73622033 C T HCN4 Missense_Mutation p.D491N 0.17 deleterious(0) unknown(0) TCGA-BR-8382-01 15 75141038 75141038 C T SCAMP2 Missense_Mutation p.D213N 0.19 deleterious(0.03) possibly_damaging(0.78) TCGA-BR-8382-01 15 78837238 78837238 A G PSMA4 Missense_Mutation p.I105M 0.28 tolerated(0.39) possibly_damaging(0.568) TCGA-BR-8382-01 15 78888987 78888987 C A CHRNA3 Nonsense_Mutation p.G493* 0.15 TCGA-BR-8382-01 15 81648919 81648919 G A TMC3 Missense_Mutation p.R254C 0.22 deleterious(0) probably_damaging(0.998) TCGA-BR-8382-01 15 86124026 86124026 T C AKAP13 Silent p.T909T 0.12 TCGA-BR-8382-01 15 89758344 89758344 C T RLBP1 Missense_Mutation p.V158I 0.09 tolerated(0.8) benign(0.041) TCGA-BR-8382-01 15 90118931 90118931 C T TICRR Silent p.F38F 0.19 TCGA-BR-8382-01 15 91452612 91452612 G A MAN2A2 Missense_Mutation p.V418I 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-BR-8382-01 15 91769857 91769857 G A SV2B Missense_Mutation p.D122N 0.09 deleterious(0.02) probably_damaging(1) TCGA-BR-8382-01 15 94901801 94901802 - G MCTP2 Frame_Shift_Ins p.D424Gfs*6 0.20 TCGA-BR-8382-01 16 114974 114974 G A RHBDF1 Missense_Mutation p.R14C 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.79) TCGA-BR-8382-01 16 14355230 14355230 A G MKL2 Missense_Mutation p.S1027G 0.12 tolerated(0.3) benign(0.001) TCGA-BR-8382-01 16 16349609 16349609 C T NOMO3 Silent p.T332T 0.11 TCGA-BR-8382-01 16 19451390 19451390 T C TMC5 Silent p.S10S 0.24 TCGA-BR-8382-01 16 20976519 20976519 C T DNAH3 Missense_Mutation p.R2896H 0.18 deleterious(0) probably_damaging(0.993) TCGA-BR-8382-01 16 21210127 21210127 G T ZP2 Missense_Mutation p.L662M 0.16 deleterious(0.02) possibly_damaging(0.849) TCGA-BR-8382-01 16 22926525 22926525 G A HS3ST2 Missense_Mutation p.R249H 0.12 deleterious(0.03) benign(0.381) TCGA-BR-8382-01 16 23091458 23091458 A T USP31 Missense_Mutation p.V662D 0.16 deleterious(0) probably_damaging(0.995) TCGA-BR-8382-01 16 2505427 2505427 G T CCNF Missense_Mutation p.G583C 0.14 deleterious(0) probably_damaging(0.984) TCGA-BR-8382-01 16 25228664 25228664 G T AQP8 Missense_Mutation p.C53F 0.10 deleterious(0) probably_damaging(0.996) TCGA-BR-8382-01 16 27509009 27509009 T - GTF3C1 Frame_Shift_Del p.S767Vfs*7 0.21 TCGA-BR-8382-01 16 27789958 27789958 A G KIAA0556 3'UTR 0.29 TCGA-BR-8382-01 16 28855345 28855345 G A TUFM Missense_Mutation p.R334W 0.12 deleterious(0) probably_damaging(0.975) TCGA-BR-8382-01 16 30364358 30364358 G - CD2BP2 Frame_Shift_Del p.P325Lfs*58 0.10 TCGA-BR-8382-01 16 30455823 30455823 T C SEPHS2 Missense_Mutation p.K409R 0.22 benign(0.168) TCGA-BR-8382-01 16 30521775 30521775 T G ITGAL Missense_Mutation p.F868V 0.11 deleterious(0) probably_damaging(0.954) TCGA-BR-8382-01 16 30666359 30666359 A G PRR14 Silent p.R356R 0.22 TCGA-BR-8382-01 16 30666362 30666362 A G PRR14 Silent p.P357P 0.22 TCGA-BR-8382-01 16 30666716 30666716 A G PRR14 Missense_Mutation p.Q430R 0.13 tolerated(0.11) benign(0.067) TCGA-BR-8382-01 16 31004445 31004445 G A STX1B Intron 0.17 TCGA-BR-8382-01 16 3778452 3778452 T A CREBBP Missense_Mutation p.Q2199L 0.09 unknown(0) TCGA-BR-8382-01 16 4039076 4039076 A - ADCY9 Frame_Shift_Del p.F743Lfs*10 0.20 TCGA-BR-8382-01 16 49412460 49412460 G A C16orf78 Missense_Mutation p.S117N 0.12 tolerated(0.07) probably_damaging(0.986) TCGA-BR-8382-01 16 53504727 53504727 A - RBL2 Frame_Shift_Del p.I868Sfs*9 0.11 TCGA-BR-8382-01 16 57598979 57598979 G A GPR114 Missense_Mutation p.V155I 0.17 tolerated(0.48) benign(0.049) TCGA-BR-8382-01 16 57693479 57693479 C A GPR56 Missense_Mutation p.L487I 0.13 deleterious(0) probably_damaging(0.984) TCGA-BR-8382-01 16 58576171 58576171 A G CNOT1 Silent p.Y1548Y 0.16 TCGA-BR-8382-01 16 58612691 58612691 C T CNOT1 Missense_Mutation p.R499H 0.17 deleterious(0.03) probably_damaging(0.977) TCGA-BR-8382-01 16 65006930 65006930 G C CDH11 Missense_Mutation p.R423G 0.16 tolerated(0.08) benign(0.347) TCGA-BR-8382-01 16 66919107 66919107 G A PDP2 Missense_Mutation p.R307H 0.31 tolerated(0.56) benign(0.005) TCGA-BR-8382-01 16 67200243 67200243 G A HSF4 Missense_Mutation p.R169Q 0.22 deleterious(0.03) benign(0.006) TCGA-BR-8382-01 16 67219046 67219046 G A EXOC3L1 Missense_Mutation p.T581M 0.24 tolerated(0.23) benign(0.028) TCGA-BR-8382-01 16 67862748 67862748 T G CENPT Splice_Site p.X427_splice 0.10 TCGA-BR-8382-01 16 68406101 68406101 C T SMPD3 5'UTR 0.23 TCGA-BR-8382-01 16 69369001 69369001 C T COG8 Missense_Mutation p.R279H 0.16 deleterious(0) probably_damaging(1) TCGA-BR-8382-01 16 69660352 69660352 T C NFAT5 Silent p.S58S 0.21 TCGA-BR-8382-01 16 69942710 69942710 C T WWP2 Missense_Mutation p.H321Y 0.18 deleterious(0) probably_damaging(0.992) TCGA-BR-8382-01 16 69988310 69988310 C T CLEC18A Missense_Mutation p.A97V 0.09 tolerated(0.27) benign(0.008) TCGA-BR-8382-01 16 70176194 70176194 G A PDPR Missense_Mutation p.R458H 0.08 deleterious(0) benign(0.243) TCGA-BR-8382-01 16 71668202 71668202 C T MARVELD3 Intron 0.16 TCGA-BR-8382-01 16 72827613 72827613 C T ZFHX3 Missense_Mutation p.V2990I 0.20 unknown(0) TCGA-BR-8382-01 16 74376109 74376109 C T RP11-252A24.2 RNA 0.15 TCGA-BR-8382-01 16 74525092 74525092 C T GLG1 Missense_Mutation p.C419Y 0.15 deleterious(0) probably_damaging(1) TCGA-BR-8382-01 16 77317937 77317937 C A ADAMTS18 Missense_Mutation p.W1194C 0.19 deleterious(0) probably_damaging(1) TCGA-BR-8382-01 16 784510 784510 C T NARFL Intron 0.29 TCGA-BR-8382-01 16 81145850 81145850 G A PKD1L2 RNA 0.16 TCGA-BR-8382-01 16 81161488 81161488 A C PKD1L2 RNA 0.19 TCGA-BR-8382-01 16 815589 815589 G C MSLN Missense_Mutation p.G256A 0.16 deleterious(0.01) benign(0.303) TCGA-BR-8382-01 16 81969978 81969978 C T PLCG2 Missense_Mutation p.T1016M 0.07 deleterious(0) probably_damaging(1) TCGA-BR-8382-01 16 85009946 85009946 G A ZDHHC7 3'UTR 0.11 TCGA-BR-8382-01 16 90161556 90161556 G A TUBB8P7 RNA 0.15 TCGA-BR-8382-01 17 11650994 11650994 G A DNAH9 Missense_Mutation p.R2174H 0.21 possibly_damaging(0.553) TCGA-BR-8382-01 17 1386933 1386933 G A MYO1C Silent p.G106G 0.24 TCGA-BR-8382-01 17 14204825 14204825 G A HS3ST3B1 5'UTR 0.17 TCGA-BR-8382-01 17 15502046 15502049 TTAG - CDRT1 Intron 0.21 TCGA-BR-8382-01 17 15534998 15534998 G A RP11-385D13.1 Missense_Mutation p.A349V 0.11 deleterious_low_confidence(0.03) probably_damaging(0.917) TCGA-BR-8382-01 17 18023583 18023585 AGG - MYO15A In_Frame_Del p.E491del 0.15 TCGA-BR-8382-01 17 18166044 18166044 T C MIEF2 Missense_Mutation p.F15L 0.24 tolerated(0.31) benign(0.064) TCGA-BR-8382-01 17 19286450 19286450 G A MAPK7 Missense_Mutation p.G786D 0.19 tolerated(0.35) possibly_damaging(0.702) TCGA-BR-8382-01 17 2234242 2234242 T C TSR1 Missense_Mutation p.E553G 0.24 tolerated(0.34) benign(0.014) TCGA-BR-8382-01 17 26958685 26958685 G A KIAA0100 Missense_Mutation p.R1371W 0.16 deleterious(0) probably_damaging(0.999) TCGA-BR-8382-01 17 27000493 27000493 G A SUPT6H Missense_Mutation p.R25Q 0.10 tolerated_low_confidence(0.1) unknown(0) TCGA-BR-8382-01 17 27086626 27086626 G A FAM222B Silent p.D117D 0.14 TCGA-BR-8382-01 17 27284483 27284483 C - SEZ6 Frame_Shift_Del p.A793Pfs*13 0.19 TCGA-BR-8382-01 17 27957928 27957928 G A SSH2 Silent p.H1401H 0.24 TCGA-BR-8382-01 17 29552144 29552144 T - NF1 Frame_Shift_Del p.Y628Tfs*3 0.18 TCGA-BR-8382-01 17 29576057 29576057 G T NF1 Nonsense_Mutation p.E1344* 0.16 TCGA-BR-8382-01 17 2966348 2966348 A C OR1D5 Missense_Mutation p.L185R 0.09 deleterious(0.01) probably_damaging(1) TCGA-BR-8382-01 17 30821885 30821885 G A MYO1D Silent p.S971S 0.18 TCGA-BR-8382-01 17 36486047 36486047 G - GPR179 Frame_Shift_Del p.K1136Rfs*3 0.12 TCGA-BR-8382-01 17 37075041 37075041 G A LASP1 3'UTR 0.23 TCGA-BR-8382-01 17 38151523 38151523 G A PSMD3 Silent p.R397R 0.15 TCGA-BR-8382-01 17 39079198 39079198 G - KRT23 3'UTR 0.18 TCGA-BR-8382-01 17 39092549 39092549 G A KRT23 Missense_Mutation p.R103C 0.16 tolerated(0.32) benign(0.041) TCGA-BR-8382-01 17 39092832 39092832 G A KRT23 Silent p.S8S 0.10 TCGA-BR-8382-01 17 40652943 40652943 T C ATP6V0A1 Splice_Site p.X639_splice 0.21 TCGA-BR-8382-01 17 40766300 40766300 C T TUBG1 Missense_Mutation p.T289M 0.19 deleterious(0.02) benign(0.359) TCGA-BR-8382-01 17 41019778 41019778 C - AOC4P RNA 0.12 TCGA-BR-8382-01 17 41606988 41606988 G A ETV4 Missense_Mutation p.R338W 0.16 deleterious(0) probably_damaging(0.999) TCGA-BR-8382-01 17 41719304 41719304 A G MEOX1 Missense_Mutation p.S247P 0.09 deleterious(0) probably_damaging(0.991) TCGA-BR-8382-01 17 42082082 42082082 G A NAGS Silent p.P17P 0.32 TCGA-BR-8382-01 17 42254018 42254018 G T ASB16 Intron 0.21 TCGA-BR-8382-01 17 42478563 42478563 T C GPATCH8 Silent p.P294P 0.15 TCGA-BR-8382-01 17 44172020 44172020 A G KANSL1 Missense_Mutation p.V446A 0.16 deleterious(0) possibly_damaging(0.687) TCGA-BR-8382-01 17 44847252 44847252 G A WNT3 Missense_Mutation p.A162V 0.16 tolerated(0.81) benign(0.002) TCGA-BR-8382-01 17 45056149 45056149 C T RPRML Silent p.V75V 0.18 TCGA-BR-8382-01 17 45750473 45750473 C T KPNB1 Missense_Mutation p.A546V 0.19 tolerated(1) benign(0.001) TCGA-BR-8382-01 17 4647391 4647391 T C ZMYND15 Missense_Mutation p.V495A 0.56 tolerated(0.31) probably_damaging(0.92) TCGA-BR-8382-01 17 46608028 46608028 G A HOXB1 Missense_Mutation p.A80V 0.20 tolerated(0.33) benign(0.006) TCGA-BR-8382-01 17 48777241 48777241 A T ANKRD40 Missense_Mutation p.D99E 0.24 tolerated(1) benign(0) TCGA-BR-8382-01 17 49713241 49713241 T G CA10 Missense_Mutation p.K255T 0.15 deleterious(0) probably_damaging(0.921) TCGA-BR-8382-01 17 55917278 55917278 C T MRPS23 Missense_Mutation p.V147I 0.17 tolerated(0.36) benign(0.001) TCGA-BR-8382-01 17 56324919 56324919 G A LPO Missense_Mutation p.R82H 0.11 deleterious(0) probably_damaging(0.999) TCGA-BR-8382-01 17 56382464 56382464 G A BZRAP1 Silent p.G1834G 0.13 TCGA-BR-8382-01 17 56434721 56434721 T C RNF43 Intron 0.11 TCGA-BR-8382-01 17 56435161 56435161 C - RNF43 Frame_Shift_Del p.G659Vfs*41 0.28 TCGA-BR-8382-01 17 56772621 56772621 G A RAD51C Intron 0.20 TCGA-BR-8382-01 17 58024111 58024111 A G RPS6KB1 Missense_Mutation p.I514V 0.14 tolerated_low_confidence(0.65) benign(0) TCGA-BR-8382-01 17 59147479 59147479 C T BCAS3 Intron 0.12 TCGA-BR-8382-01 17 61557711 61557711 G A ACE Silent p.T223T 0.11 TCGA-BR-8382-01 17 61712155 61712155 A T MAP3K3 Missense_Mutation p.K71N 0.20 tolerated_low_confidence(0.47) benign(0.098) TCGA-BR-8382-01 17 62131738 62131738 C T ERN1 Missense_Mutation p.A609T 0.25 deleterious(0.02) probably_damaging(0.998) TCGA-BR-8382-01 17 62226424 62226427 CATC - TEX2 Frame_Shift_Del p.D1103Mfs*6 0.09 TCGA-BR-8382-01 17 62796366 62796366 G A PLEKHM1P RNA 0.12 TCGA-BR-8382-01 17 65040929 65040929 C T CACNG1 Silent p.F51F 0.16 TCGA-BR-8382-01 17 65199438 65199438 G T HELZ Silent p.S123S 0.11 TCGA-BR-8382-01 17 65344745 65344745 C T PSMD12 Missense_Mutation p.R144Q 0.10 deleterious(0) probably_damaging(0.999) TCGA-BR-8382-01 17 66864183 66864183 A - ABCA8 3'UTR 0.32 TCGA-BR-8382-01 17 67099024 67099024 A C ABCA6 Silent p.T942T 0.20 TCGA-BR-8382-01 17 67183901 67183901 G T ABCA10 Missense_Mutation p.L751I 0.19 deleterious(0) probably_damaging(0.991) TCGA-BR-8382-01 17 6930865 6930865 G A BCL6B Missense_Mutation p.R456Q 0.21 deleterious(0) possibly_damaging(0.849) TCGA-BR-8382-01 17 71346827 71346827 C T SDK2 Missense_Mutation p.R1954Q 0.12 tolerated(0.05) probably_damaging(0.997) TCGA-BR-8382-01 17 7140781 7140781 G A PHF23 Missense_Mutation p.R28W 0.19 deleterious(0) probably_damaging(0.945) TCGA-BR-8382-01 17 72781738 72781738 A G TMEM104 Missense_Mutation p.M55V 0.24 tolerated(0.17) benign(0.058) TCGA-BR-8382-01 17 72832492 72832492 G A TMEM104 Missense_Mutation p.R386H 0.17 deleterious(0.03) benign(0.234) TCGA-BR-8382-01 17 7339811 7339811 T C TMEM102 Silent p.R171R 0.15 TCGA-BR-8382-01 17 74072970 74072970 G A GALR2 Missense_Mutation p.A208T 0.15 tolerated(0.19) benign(0.037) TCGA-BR-8382-01 17 7756403 7756403 C A KDM6B Missense_Mutation p.R1566S 0.21 probably_damaging(0.991) TCGA-BR-8382-01 17 78059814 78059814 G T CCDC40 Missense_Mutation p.G750W 0.11 deleterious(0) probably_damaging(0.996) TCGA-BR-8382-01 17 7813796 7813796 C T CHD3 Missense_Mutation p.R1940C 0.12 possibly_damaging(0.898) TCGA-BR-8382-01 17 78210884 78210884 C A SLC26A11 Silent p.S298S 0.16 TCGA-BR-8382-01 17 78395647 78395647 G A ENDOV Missense_Mutation p.R83H 0.24 tolerated(0.12) benign(0.009) TCGA-BR-8382-01 17 7915595 7915595 A G GUCY2D Missense_Mutation p.Q628R 0.12 deleterious(0) benign(0.033) TCGA-BR-8382-01 17 79804412 79804412 G A P4HB Missense_Mutation p.L317F 0.12 tolerated(0.1) possibly_damaging(0.664) TCGA-BR-8382-01 17 80045689 80045689 G A FASN Missense_Mutation p.P972L 0.21 tolerated(0.39) benign(0.001) TCGA-BR-8382-01 17 80059546 80059546 G - FASN 5'Flank 0.12 TCGA-BR-8382-01 17 80280150 80280150 G T SECTM1 Missense_Mutation p.P212T 0.16 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-BR-8382-01 17 8047100 8047100 C T PER1 Silent p.A852A 0.18 TCGA-BR-8382-01 17 8218518 8218518 C A ARHGEF15 Missense_Mutation p.L395M 0.19 deleterious(0.03) probably_damaging(0.998) TCGA-BR-8382-01 17 8221918 8221918 C T ARHGEF15 Missense_Mutation p.R604C 0.19 deleterious(0) probably_damaging(0.988) TCGA-BR-8382-01 18 203145 203146 - T USP14 Frame_Shift_Ins p.Y333Lfs*2 0.21 TCGA-BR-8382-01 18 21044006 21044006 G A RIOK3 Silent p.Q85Q 0.19 TCGA-BR-8382-01 18 21095895 21095895 G A C18orf8 Missense_Mutation p.E162K 0.14 tolerated(0.36) benign(0.023) TCGA-BR-8382-01 18 22805689 22805689 A - ZNF521 Frame_Shift_Del p.F731Lfs*13 0.16 TCGA-BR-8382-01 18 28654723 28654723 C T DSC2 Missense_Mutation p.G605D 0.17 deleterious(0.03) probably_damaging(1) TCGA-BR-8382-01 18 28711897 28711897 C A DSC1 Intron 0.25 TCGA-BR-8382-01 18 32844198 32844198 T G ZSCAN30 Missense_Mutation p.N40T 0.12 tolerated(0.06) benign(0.026) TCGA-BR-8382-01 18 3452168 3452168 C T TGIF1 Missense_Mutation p.P64L 0.18 deleterious_low_confidence(0) benign(0) TCGA-BR-8382-01 18 34833792 34833792 G A CELF4 Silent p.D481D 0.19 TCGA-BR-8382-01 18 43204714 43204714 A G SLC14A2 Missense_Mutation p.S29G 0.16 deleterious_low_confidence(0.03) benign(0.001) TCGA-BR-8382-01 18 44030744 44030744 C - RNF165 Frame_Shift_Del p.H268Tfs*40 0.14 TCGA-BR-8382-01 18 44416356 44416357 - CA PIAS2 Frame_Shift_Ins p.D389Vfs*10 0.20 TCGA-BR-8382-01 18 47810401 47810401 C T CXXC1 Missense_Mutation p.G430S 0.20 tolerated(0.06) probably_damaging(0.999) TCGA-BR-8382-01 18 50832030 50832030 C T DCC Missense_Mutation p.T665M 0.18 tolerated(0.11) probably_damaging(0.917) TCGA-BR-8382-01 18 5406836 5406836 G - EPB41L3 Frame_Shift_Del p.V764Cfs*12 0.19 TCGA-BR-8382-01 18 56184321 56184321 G A ALPK2 Missense_Mutation p.T1920M 0.17 deleterious(0) probably_damaging(1) TCGA-BR-8382-01 18 60645706 60645706 C T PHLPP1 Missense_Mutation p.A1399V 0.17 deleterious(0) probably_damaging(0.986) TCGA-BR-8382-01 18 77917987 77917987 C T PARD6G Silent p.S266S 0.26 TCGA-BR-8382-01 19 1049320 1049320 G A ABCA7 Silent p.L812L 0.16 TCGA-BR-8382-01 19 10503977 10503977 G A CDC37 Silent p.P289P 0.14 TCGA-BR-8382-01 19 10738649 10738649 G A SLC44A2 Missense_Mutation p.E72K 0.10 tolerated(0.1) benign(0.001) TCGA-BR-8382-01 19 11303908 11303908 G A KANK2 Missense_Mutation p.A283V 0.15 tolerated(0.14) benign(0.021) TCGA-BR-8382-01 19 11508131 11508131 C T RGL3 Missense_Mutation p.R636Q 0.17 deleterious(0.01) unknown(0) TCGA-BR-8382-01 19 11891996 11891996 G A ZNF441 Missense_Mutation p.G453R 0.18 deleterious(0.02) probably_damaging(0.999) TCGA-BR-8382-01 19 12430297 12430297 C T ZNF563 Missense_Mutation p.R181H 0.20 tolerated(0.56) possibly_damaging(0.508) TCGA-BR-8382-01 19 12911023 12911023 G A PRDX2 Silent p.G116G 0.20 TCGA-BR-8382-01 19 12977532 12977532 G - MAST1 Frame_Shift_Del p.V699Wfs*32 0.18 TCGA-BR-8382-01 19 12979551 12979551 G A MAST1 Silent p.A887A 0.07 TCGA-BR-8382-01 19 14270398 14270398 T G LPHN1 Splice_Site p.X619_splice 0.12 TCGA-BR-8382-01 19 15360063 15360063 C T BRD4 Intron 0.16 TCGA-BR-8382-01 19 16275719 16275720 - A CIB3 Frame_Shift_Ins p.N118* 0.13 TCGA-BR-8382-01 19 17213299 17213299 G A MYO9B Missense_Mutation p.A258T 0.14 deleterious(0.04) probably_damaging(1) TCGA-BR-8382-01 19 17783305 17783305 C A UNC13A Splice_Site p.X51_splice 0.18 TCGA-BR-8382-01 19 18047384 18047384 G A CCDC124 Missense_Mutation p.R52H 0.19 deleterious(0) probably_damaging(0.968) TCGA-BR-8382-01 19 18248078 18248078 T - MAST3 Frame_Shift_Del p.F640Sfs*107 0.14 TCGA-BR-8382-01 19 18378125 18378125 C T KIAA1683 Silent p.A75A 0.20 TCGA-BR-8382-01 19 18778576 18778576 C T KLHL26 Silent p.S123S 0.23 TCGA-BR-8382-01 19 18778628 18778628 G A KLHL26 Missense_Mutation p.V141M 0.11 deleterious(0.03) probably_damaging(0.992) TCGA-BR-8382-01 19 19371714 19371714 C T HAPLN4 Missense_Mutation p.R131H 0.09 tolerated(0.18) benign(0.089) TCGA-BR-8382-01 19 19609429 19609429 C - GATAD2A Frame_Shift_Del p.P369Qfs*5 0.11 TCGA-BR-8382-01 19 22941044 22941044 T A ZNF99 Missense_Mutation p.K556M 0.11 deleterious(0.02) probably_damaging(0.967) TCGA-BR-8382-01 19 30935211 30935211 G A ZNF536 Missense_Mutation p.V248I 0.21 tolerated(0.19) benign(0.013) TCGA-BR-8382-01 19 33493166 33493168 GAG - RHPN2 In_Frame_Del p.L364del 0.20 TCGA-BR-8382-01 19 34263898 34263898 G A CHST8 Missense_Mutation p.R402H 0.20 tolerated(0.11) benign(0.051) TCGA-BR-8382-01 19 35800998 35800998 C T MAG Missense_Mutation p.R485C 0.06 tolerated(0.17) possibly_damaging(0.489) TCGA-BR-8382-01 19 36128361 36128361 C T RBM42 Missense_Mutation p.R450C 0.13 deleterious(0) unknown(0) TCGA-BR-8382-01 19 36279053 36279053 C A ARHGAP33 Missense_Mutation p.R1035S 0.21 deleterious_low_confidence(0) probably_damaging(0.943) TCGA-BR-8382-01 19 36499174 36499174 G A SYNE4 Missense_Mutation p.P75L 0.16 tolerated_low_confidence(0.12) probably_damaging(0.982) TCGA-BR-8382-01 19 36510166 36510166 C T CLIP3 Missense_Mutation p.G321S 0.25 deleterious(0.01) probably_damaging(1) TCGA-BR-8382-01 19 38877092 38877092 G A GGN Silent p.G270G 0.22 TCGA-BR-8382-01 19 38877558 38877558 G A GGN Missense_Mutation p.A115V 0.27 deleterious_low_confidence(0.01) unknown(0) TCGA-BR-8382-01 19 38949887 38949887 C A RYR1 Missense_Mutation p.R757S 0.21 probably_damaging(0.999) TCGA-BR-8382-01 19 38990283 38990283 G A RYR1 Missense_Mutation p.V2346M 0.19 possibly_damaging(0.501) TCGA-BR-8382-01 19 39759369 39759369 C T IFNL2 Silent p.T21T 0.09 TCGA-BR-8382-01 19 40320999 40320999 G - DYRK1B Intron 0.22 TCGA-BR-8382-01 19 40581804 40581804 T C ZNF780A Missense_Mutation p.Q183R 0.10 tolerated(0.13) probably_damaging(0.965) TCGA-BR-8382-01 19 40741932 40741932 C T AKT2 Missense_Mutation p.R347H 0.14 tolerated(0.11) benign(0.064) TCGA-BR-8382-01 19 41071344 41071344 G T SPTBN4 Silent p.V1977V 0.09 TCGA-BR-8382-01 19 41265514 41265514 C T SNRPA Missense_Mutation p.P142L 0.33 tolerated(0.16) benign(0.043) TCGA-BR-8382-01 19 41596364 41596364 C T CYP2A13 Silent p.S183S 0.15 TCGA-BR-8382-01 19 41726615 41726615 C A AXL Missense_Mutation p.L54I 0.22 tolerated(0.07) probably_damaging(0.939) TCGA-BR-8382-01 19 42584303 42584303 C T ZNF574 Silent p.R515R 0.16 TCGA-BR-8382-01 19 42753368 42753368 C - ERF Frame_Shift_Del p.G299Efs*12 0.17 TCGA-BR-8382-01 19 42791338 42791339 - C CIC Frame_Shift_Ins p.G136Rfs*8 0.12 TCGA-BR-8382-01 19 42814313 42814313 C T PRR19 Missense_Mutation p.R193W 0.22 deleterious(0.03) possibly_damaging(0.781) TCGA-BR-8382-01 19 42838298 42838298 G - MEGF8 Frame_Shift_Del p.G166Vfs*53 0.23 TCGA-BR-8382-01 19 43032596 43032596 C T CEACAM1 5'UTR 0.14 TCGA-BR-8382-01 19 44099118 44099118 C T IRGQ Missense_Mutation p.A125T 0.15 tolerated_low_confidence(0.14) benign(0.002) TCGA-BR-8382-01 19 44891368 44891368 C T ZNF285 Missense_Mutation p.D347N 0.20 tolerated(0.18) benign(0.036) TCGA-BR-8382-01 19 45262912 45262912 C - BCL3 3'UTR 0.09 TCGA-BR-8382-01 19 45493811 45493811 C A CLPTM1 Missense_Mutation p.L431I 0.16 tolerated(0.66) benign(0.06) TCGA-BR-8382-01 19 4550161 4550161 C T SEMA6B Silent p.A415A 0.13 TCGA-BR-8382-01 19 46443245 46443245 G A NOVA2 Missense_Mutation p.T452M 0.18 deleterious(0) probably_damaging(1) TCGA-BR-8382-01 19 47425372 47425372 G A ARHGAP35 Missense_Mutation p.R1147H 0.15 deleterious(0.02) probably_damaging(0.951) TCGA-BR-8382-01 19 47492890 47492890 C T ARHGAP35 Silent p.L1332L 0.13 TCGA-BR-8382-01 19 47492913 47492913 C T ARHGAP35 Silent p.I1339I 0.18 TCGA-BR-8382-01 19 48198197 48198197 C G GLTSCR1 Missense_Mutation p.A979G 0.08 possibly_damaging(0.546) TCGA-BR-8382-01 19 48967762 48967762 C T KCNJ14 Missense_Mutation p.R347C 0.12 deleterious(0) probably_damaging(0.959) TCGA-BR-8382-01 19 49547355 49547355 C A CGB5 5'UTR 0.19 TCGA-BR-8382-01 19 49658497 49658497 G T HRC 5'UTR 0.18 TCGA-BR-8382-01 19 49951145 49951145 C T PIH1D1 Silent p.E140E 0.19 TCGA-BR-8382-01 19 49994454 49994454 C T RPL13A Intron 0.15 TCGA-BR-8382-01 19 50837601 50837602 - C KCNC3 5'Flank 0.36 TCGA-BR-8382-01 19 50917112 50917112 G A POLD1 Silent p.S788S 0.15 TCGA-BR-8382-01 19 50979677 50979677 G A FAM71E1 5'UTR 0.27 TCGA-BR-8382-01 19 50985148 50985148 C T EMC10 Intron 0.25 TCGA-BR-8382-01 19 50985202 50985202 T C EMC10 Intron 0.26 TCGA-BR-8382-01 19 51955752 51955752 G A SIGLEC8 Nonsense_Mutation p.Q461* 0.23 TCGA-BR-8382-01 19 52941489 52941489 A G ZNF534 Missense_Mutation p.Q272R 0.19 tolerated(0.63) benign(0.07) TCGA-BR-8382-01 19 54444809 54444809 T - CACNG7 Frame_Shift_Del p.H172Ifs*23 0.14 TCGA-BR-8382-01 19 54483177 54483177 G A CACNG8 Missense_Mutation p.G142R 0.17 deleterious(0) probably_damaging(1) TCGA-BR-8382-01 19 54600440 54600440 A G OSCAR Missense_Mutation p.S32P 0.21 tolerated(0.27) possibly_damaging(0.628) TCGA-BR-8382-01 19 54760025 54760025 A G LILRB5 Missense_Mutation p.L179P 0.12 deleterious(0) possibly_damaging(0.862) TCGA-BR-8382-01 19 55401269 55401269 A G FCAR 3'UTR 0.20 TCGA-BR-8382-01 19 55814186 55814186 G T BRSK1 Missense_Mutation p.G327C 0.14 deleterious(0) probably_damaging(0.965) TCGA-BR-8382-01 19 56206189 56206189 C - EPN1 Frame_Shift_Del p.P542Hfs*33 0.19 TCGA-BR-8382-01 19 57646264 57646264 T - ZIM3 3'UTR 0.22 TCGA-BR-8382-01 19 58367595 58367595 T A CTD-2583A14.10 Missense_Mutation p.S53T 0.25 deleterious(0.03) probably_damaging(0.988) TCGA-BR-8382-01 19 58491210 58491210 C T ZNF606 Missense_Mutation p.A280T 0.12 tolerated(0.35) benign(0) TCGA-BR-8382-01 19 58596660 58596660 G T ZSCAN18 Missense_Mutation p.P365T 0.12 tolerated(0.37) benign(0.072) TCGA-BR-8382-01 19 59027859 59027859 G A ZBTB45 Silent p.R394R 0.29 TCGA-BR-8382-01 19 618551 618551 G A POLRMT Missense_Mutation p.P1120L 0.21 deleterious(0.04) probably_damaging(1) TCGA-BR-8382-01 19 8161800 8161800 C T FBN3 Missense_Mutation p.R1793Q 0.15 tolerated(0.49) benign(0.015) TCGA-BR-8382-01 19 8176580 8176580 G A FBN3 Missense_Mutation p.R1346C 0.16 deleterious(0) probably_damaging(0.946) TCGA-BR-8382-01 19 9362217 9362217 T - OR7E24 Frame_Shift_Del p.F168Lfs*12 0.20 TCGA-BR-8382-01 1 104112876 104112876 C - AMY2B Intron 0.18 TCGA-BR-8382-01 1 10493999 10493999 C T APITD1 Missense_Mutation p.S51L 0.17 deleterious(0.03) possibly_damaging(0.8) TCGA-BR-8382-01 1 10703273 10703273 G A CASZ1 Missense_Mutation p.R1322W 0.16 deleterious(0) probably_damaging(0.999) TCGA-BR-8382-01 1 108023366 108023366 C A NTNG1 Nonsense_Mutation p.C508* 0.18 TCGA-BR-8382-01 1 109479918 109479918 T C CLCC1 Silent p.R388R 0.13 TCGA-BR-8382-01 1 109888405 109888405 G A SORT1 Missense_Mutation p.R311C 0.27 deleterious(0.01) possibly_damaging(0.787) TCGA-BR-8382-01 1 110032674 110032674 A G ATXN7L2 Missense_Mutation p.E387G 0.14 deleterious(0) probably_damaging(0.999) TCGA-BR-8382-01 1 110200420 110200420 C T GSTM4 Missense_Mutation p.R96C 0.14 deleterious(0.01) benign(0.363) TCGA-BR-8382-01 1 110655253 110655253 C T UBL4B Missense_Mutation p.R33W 0.15 deleterious(0) probably_damaging(0.939) TCGA-BR-8382-01 1 1118373 1118373 A G TTLL10 Missense_Mutation p.D345G 0.15 tolerated(0.1) benign(0.203) TCGA-BR-8382-01 1 11308061 11308061 G A MTOR Missense_Mutation p.R311C 0.19 deleterious(0) possibly_damaging(0.543) TCGA-BR-8382-01 1 114641766 114641766 C T SYT6 Silent p.P353P 0.17 TCGA-BR-8382-01 1 115418728 115418728 T G SYCP1 Silent p.A232A 0.11 TCGA-BR-8382-01 1 11854789 11854789 C T MTHFR Missense_Mutation p.R388H 0.14 deleterious(0) probably_damaging(0.999) TCGA-BR-8382-01 1 120465332 120465332 C T NOTCH2 Silent p.T1643T 0.17 TCGA-BR-8382-01 1 1333712 1333712 A G CCNL2 Missense_Mutation p.M125T 0.12 deleterious(0) possibly_damaging(0.801) TCGA-BR-8382-01 1 14105788 14105788 C T PRDM2 Missense_Mutation p.R500W 0.17 probably_damaging(1) TCGA-BR-8382-01 1 144859831 144859831 G T PDE4DIP Missense_Mutation p.L2085I 0.08 tolerated(0.11) benign(0.364) TCGA-BR-8382-01 1 144917533 144917533 C T PDE4DIP Missense_Mutation p.R524H 0.09 tolerated(0.07) benign(0.289) TCGA-BR-8382-01 1 145562653 145562653 G A ANKRD35 Missense_Mutation p.A781T 0.17 deleterious(0.02) probably_damaging(0.993) TCGA-BR-8382-01 1 151134215 151134215 T - LYSMD1 Frame_Shift_Del p.N181Mfs*12 0.15 TCGA-BR-8382-01 1 152193102 152193102 G A HRNR Missense_Mutation p.R335C 0.21 unknown(0) TCGA-BR-8382-01 1 152551990 152551990 A C LCE3D 3'UTR 0.30 TCGA-BR-8382-01 1 152595541 152595541 C T LCE3A Silent p.P13P 0.16 TCGA-BR-8382-01 1 154516454 154516454 G A TDRD10 Silent p.V173V 0.14 TCGA-BR-8382-01 1 154920759 154920759 G A PBXIP1 Missense_Mutation p.R165W 0.25 deleterious(0.04) benign(0.063) TCGA-BR-8382-01 1 154938496 154938496 C T SHC1 Missense_Mutation p.R438Q 0.17 tolerated(0.43) benign(0.097) TCGA-BR-8382-01 1 154987334 154987334 C T ZBTB7B Silent p.G100G 0.15 TCGA-BR-8382-01 1 155019720 155019720 G A DCST1 Missense_Mutation p.R515Q 0.20 tolerated(0.08) probably_damaging(0.938) TCGA-BR-8382-01 1 155032817 155032817 C T ADAM15 Silent p.Y735Y 0.11 TCGA-BR-8382-01 1 156046883 156046883 A C MEX3A Missense_Mutation p.S349A 0.13 tolerated(0.06) benign(0.018) TCGA-BR-8382-01 1 156594190 156594190 T C HAPLN2 Missense_Mutation p.Y163H 0.19 deleterious(0) probably_damaging(0.998) TCGA-BR-8382-01 1 156737593 156737593 T C PRCC Silent p.D10D 0.20 TCGA-BR-8382-01 1 158225130 158225130 G T CD1A Missense_Mutation p.L105F 0.13 tolerated(1) benign(0.038) TCGA-BR-8382-01 1 159922049 159922049 T C SLAMF9 Intron 0.25 TCGA-BR-8382-01 1 160181415 160181415 C T PEA15 Silent p.C27C 0.09 TCGA-BR-8382-01 1 162353432 162353432 G A C1orf226 Missense_Mutation p.D303N 0.20 deleterious(0) probably_damaging(0.949) TCGA-BR-8382-01 1 165218652 165218652 T C LMX1A Silent p.S163S 0.22 TCGA-BR-8382-01 1 167365537 167365537 C T POU2F1 Silent p.L334L 0.18 TCGA-BR-8382-01 1 167865906 167865906 G - ADCY10 Frame_Shift_Del p.N223Ifs*27 0.23 TCGA-BR-8382-01 1 16945401 16945401 G A RP5-1182A14.5 3'Flank 0.11 TCGA-BR-8382-01 1 177250045 177250045 A C BRINP2 Missense_Mutation p.K578T 0.08 deleterious(0) benign(0.326) TCGA-BR-8382-01 1 177927333 177927333 G - SEC16B Frame_Shift_Del p.S434Vfs*29 0.19 TCGA-BR-8382-01 1 179993662 179993662 G A CEP350 Silent p.S1165S 0.16 TCGA-BR-8382-01 1 185897784 185897784 T - HMCN1 Frame_Shift_Del p.F514Lfs*26 0.20 TCGA-BR-8382-01 1 19181096 19181096 G A TAS1R2 Missense_Mutation p.R290C 0.22 deleterious(0.03) probably_damaging(0.969) TCGA-BR-8382-01 1 193121556 193121556 G A CDC73 Missense_Mutation p.M318I 0.21 tolerated(0.09) possibly_damaging(0.597) TCGA-BR-8382-01 1 19487483 19487483 A C UBR4 Silent p.A1778A 0.18 TCGA-BR-8382-01 1 19593833 19593833 C A AKR7L Missense_Mutation p.W141C 0.15 probably_damaging(1) TCGA-BR-8382-01 1 1961102 1961102 C T GABRD Silent p.F320F 0.19 TCGA-BR-8382-01 1 196918663 196918663 C A CFHR2 Missense_Mutation p.P46H 0.18 deleterious(0.02) probably_damaging(0.979) TCGA-BR-8382-01 1 197030128 197030128 G T F13B Missense_Mutation p.Q177K 0.19 tolerated(0.54) benign(0.1) TCGA-BR-8382-01 1 197070524 197070524 T - ASPM Frame_Shift_Del p.K2619Nfs*22 0.26 TCGA-BR-8382-01 1 200959409 200959409 G A KIF21B Missense_Mutation p.R963W 0.13 deleterious(0) benign(0.2) TCGA-BR-8382-01 1 201356046 201356046 C T LAD1 Missense_Mutation p.R148Q 0.16 tolerated(0.64) benign(0.024) TCGA-BR-8382-01 1 204228512 204228512 C - PLEKHA6 Frame_Shift_Del p.G294Dfs*22 0.16 TCGA-BR-8382-01 1 204587829 204587829 G - LRRN2 Frame_Shift_Del p.P431Qfs*5 0.18 TCGA-BR-8382-01 1 204943372 204943372 C T NFASC Missense_Mutation p.R449W 0.11 deleterious(0.04) probably_damaging(0.994) TCGA-BR-8382-01 1 207107940 207107940 G A PIGR Silent p.D510D 0.15 TCGA-BR-8382-01 1 213303055 213303055 C T RPS6KC1 Missense_Mutation p.R220W 0.16 tolerated(0.08) possibly_damaging(0.88) TCGA-BR-8382-01 1 216062163 216062163 G A USH2A Missense_Mutation p.L2610F 0.17 benign(0.072) TCGA-BR-8382-01 1 223991931 223991931 T - TP53BP2 Frame_Shift_Del p.V199* 0.16 TCGA-BR-8382-01 1 224009062 224009062 A G TP53BP2 Missense_Mutation p.L12P 0.17 deleterious(0) probably_damaging(0.999) TCGA-BR-8382-01 1 226034781 226034788 CTCTGCGC - TMEM63A Frame_Shift_Del p.A793Rfs*116 0.20 TCGA-BR-8382-01 1 227921298 227921299 - G JMJD4 Frame_Shift_Ins p.G260Rfs*63 0.27 TCGA-BR-8382-01 1 228596522 228596522 C A TRIM17 Intron 0.17 TCGA-BR-8382-01 1 22965798 22965798 T C C1QA Silent p.G212G 0.18 TCGA-BR-8382-01 1 229737932 229737932 G A TAF5L Intron 0.15 TCGA-BR-8382-01 1 232942219 232942219 C T MAP10 Missense_Mutation p.R484C 0.20 tolerated(0.2) benign(0.001) TCGA-BR-8382-01 1 233388424 233388424 C T PCNXL2 Missense_Mutation p.G649S 0.23 tolerated(1) benign(0.001) TCGA-BR-8382-01 1 237608789 237608789 G A RYR2 Missense_Mutation p.R420Q 0.09 possibly_damaging(0.462) TCGA-BR-8382-01 1 240656607 240656613 GGCTGGA - GREM2 Frame_Shift_Del p.S55Rfs*26 0.11 TCGA-BR-8382-01 1 240656622 240656622 C T GREM2 Missense_Mutation p.V52M 0.13 deleterious(0.02) possibly_damaging(0.596) TCGA-BR-8382-01 1 241958536 241958536 G A WDR64 Missense_Mutation p.V999M 0.12 tolerated(0.23) benign(0) TCGA-BR-8382-01 1 245861420 245861420 G T KIF26B Missense_Mutation p.R1946L 0.18 deleterious(0) unknown(0) TCGA-BR-8382-01 1 247719754 247719754 T C GCSAML Silent p.D25D 0.30 TCGA-BR-8382-01 1 248262815 248262815 C T OR2L13 Silent p.H46H 0.18 TCGA-BR-8382-01 1 248525518 248525518 A C OR2T4 Missense_Mutation p.E212D 0.10 tolerated(0.09) probably_damaging(1) TCGA-BR-8382-01 1 248685798 248685798 T - OR2G6 Frame_Shift_Del p.L285* 0.11 TCGA-BR-8382-01 1 27097751 27097751 C - ARID1A Frame_Shift_Del p.P1115Qfs*46 0.11 TCGA-BR-8382-01 1 27099909 27099909 C T ARID1A Missense_Mutation p.A1263V 0.21 unknown(0) TCGA-BR-8382-01 1 29365854 29365854 A G EPB41 Missense_Mutation p.R518G 0.13 deleterious(0.01) probably_damaging(0.998) TCGA-BR-8382-01 1 3328391 3328391 G A PRDM16 Missense_Mutation p.D544N 0.20 tolerated(0.05) possibly_damaging(0.517) TCGA-BR-8382-01 1 3328975 3328975 C A PRDM16 Nonsense_Mutation p.Y738* 0.17 TCGA-BR-8382-01 1 33745971 33745971 C T ZNF362 Missense_Mutation p.A199V 0.25 tolerated(0.25) possibly_damaging(0.818) TCGA-BR-8382-01 1 34666581 34666581 C T C1orf94 Silent p.S406S 0.22 TCGA-BR-8382-01 1 35825031 35825031 T - ZMYM4 Frame_Shift_Del p.F199Lfs*71 0.23 TCGA-BR-8382-01 1 37949047 37949047 G T ZC3H12A Missense_Mutation p.R545S 0.10 tolerated(0.74) benign(0.001) TCGA-BR-8382-01 1 38034527 38034527 T G GNL2 Missense_Mutation p.K598T 0.15 tolerated(0.07) benign(0.14) TCGA-BR-8382-01 1 40307382 40307384 CCA - TRIT1 3'UTR 0.14 TCGA-BR-8382-01 1 43888807 43888807 G T SZT2 Missense_Mutation p.R692L 0.23 deleterious(0.03) possibly_damaging(0.906) TCGA-BR-8382-01 1 43916935 43916935 G A HYI Missense_Mutation p.R270W 0.20 tolerated(0.06) benign(0.012) TCGA-BR-8382-01 1 45813321 45813321 A G TESK2 Missense_Mutation p.M223T 0.14 deleterious(0) probably_damaging(1) TCGA-BR-8382-01 1 46744617 46744617 G A LRRC41 Missense_Mutation p.R787W 0.18 deleterious(0) possibly_damaging(0.835) TCGA-BR-8382-01 1 47489404 47489404 G A CYP4X1 5'UTR 0.12 TCGA-BR-8382-01 1 47611985 47611985 T C CYP4A22 Intron 0.24 TCGA-BR-8382-01 1 48688549 48688549 C T SLC5A9 Silent p.F47F 0.18 TCGA-BR-8382-01 1 48698101 48698101 G - SLC5A9 Frame_Shift_Del p.G347Afs*3 0.13 TCGA-BR-8382-01 1 48701407 48701407 G A SLC5A9 Missense_Mutation p.R408Q 0.12 deleterious(0) probably_damaging(0.972) TCGA-BR-8382-01 1 48821382 48821382 T - SPATA6 Frame_Shift_Del p.N385Mfs*3 0.14 TCGA-BR-8382-01 1 52927267 52927267 A G ZCCHC11 Missense_Mutation p.I1050T 0.20 deleterious(0) probably_damaging(0.999) TCGA-BR-8382-01 1 55559693 55559693 G A USP24 Missense_Mutation p.R2091W 0.27 deleterious(0.02) probably_damaging(0.919) TCGA-BR-8382-01 1 60106990 60106990 G A FGGY Silent p.A420A 0.15 TCGA-BR-8382-01 1 62916272 62916272 A - USP1 Frame_Shift_Del p.N662Mfs*2 0.29 TCGA-BR-8382-01 1 63063201 63063201 A C ANGPTL3 5'UTR 0.17 TCGA-BR-8382-01 1 65852530 65852530 C A DNAJC6 Missense_Mutation p.P344H 0.20 deleterious(0) probably_damaging(1) TCGA-BR-8382-01 1 67411943 67411943 A G MIER1 Missense_Mutation p.T102A 0.09 tolerated(0.34) benign(0.009) TCGA-BR-8382-01 1 70257797 70257797 T C LRRC7 Silent p.T87T 0.11 TCGA-BR-8382-01 1 75072496 75072498 CTT - C1orf173 In_Frame_Del p.K426del 0.21 TCGA-BR-8382-01 1 75139242 75139242 A G C1orf173 5'UTR 0.13 TCGA-BR-8382-01 1 7527916 7527916 C T CAMTA1 Silent p.S155S 0.15 TCGA-BR-8382-01 1 87041015 87041015 G A CLCA4 Missense_Mutation p.V562M 0.18 deleterious(0.01) probably_damaging(0.964) TCGA-BR-8382-01 1 89846020 89846020 T C GBP6 Missense_Mutation p.F234S 0.28 deleterious(0) probably_damaging(1) TCGA-BR-8382-01 1 9099965 9099965 G A SLC2A5 Missense_Mutation p.A260V 0.19 tolerated(0.31) benign(0.048) TCGA-BR-8382-01 1 91405341 91405341 A G ZNF644 Missense_Mutation p.Y524H 0.19 tolerated(0.05) probably_damaging(0.998) TCGA-BR-8382-01 1 94480230 94480230 T C ABCA4 Missense_Mutation p.M1777V 0.15 deleterious(0) possibly_damaging(0.824) TCGA-BR-8382-01 1 94639400 94639400 A - ARHGAP29 3'UTR 0.14 TCGA-BR-8382-01 1 9656056 9656056 C T TMEM201 Silent p.N74N 0.16 TCGA-BR-8382-01 20 16359990 16359990 G A KIF16B Missense_Mutation p.T886M 0.16 tolerated_low_confidence(0.22) benign(0.197) TCGA-BR-8382-01 20 21492693 21492693 C T NKX2-2 Silent p.A230A 0.17 TCGA-BR-8382-01 20 23016705 23016705 C T SSTR4 Silent p.A195A 0.13 TCGA-BR-8382-01 20 30672331 30672331 G A HCK Missense_Mutation p.G274R 0.10 deleterious(0.01) probably_damaging(1) TCGA-BR-8382-01 20 30956840 30956840 C A ASXL1 Missense_Mutation p.L56I 0.12 deleterious(0) probably_damaging(0.996) TCGA-BR-8382-01 20 31022318 31022318 G A ASXL1 Silent p.T601T 0.18 TCGA-BR-8382-01 20 3145154 3145154 C T LZTS3 Silent p.E656E 0.19 TCGA-BR-8382-01 20 31619462 31619462 G A BPIFB6 Silent p.R3R 0.18 TCGA-BR-8382-01 20 31813012 31813012 C T BPIFA3 Silent p.C165C 0.16 TCGA-BR-8382-01 20 3204042 3204042 C T ITPA Silent p.N173N 0.16 TCGA-BR-8382-01 20 33330813 33330813 G A NCOA6 Nonsense_Mutation p.Q1083* 0.13 TCGA-BR-8382-01 20 33331122 33331122 G A NCOA6 Nonsense_Mutation p.Q980* 0.17 TCGA-BR-8382-01 20 34143892 34143892 C T ERGIC3 Missense_Mutation p.A274V 0.14 tolerated(0.17) possibly_damaging(0.755) TCGA-BR-8382-01 20 34313012 34313012 G A RBM39 Missense_Mutation p.A161V 0.12 deleterious(0) possibly_damaging(0.687) TCGA-BR-8382-01 20 35219539 35219539 A - TGIF2 Frame_Shift_Del p.K141Sfs*18 0.15 TCGA-BR-8382-01 20 36405692 36405692 G - CTNNBL1 Intron 0.09 TCGA-BR-8382-01 20 37353288 37353288 C - SLC32A1 5'UTR 0.29 TCGA-BR-8382-01 20 47895511 47895511 T C ZNFX1 5'Flank 0.24 TCGA-BR-8382-01 20 47991220 47991220 G A KCNB1 Missense_Mutation p.R293C 0.18 deleterious(0) probably_damaging(1) TCGA-BR-8382-01 20 52192367 52192367 T A ZNF217 Missense_Mutation p.D979V 0.15 tolerated(0.12) benign(0.33) TCGA-BR-8382-01 20 53205319 53205319 C T DOK5 Missense_Mutation p.A128V 0.18 tolerated(0.07) possibly_damaging(0.566) TCGA-BR-8382-01 20 55100911 55100911 A - FAM209A Frame_Shift_Del p.R103Efs*14 0.15 TCGA-BR-8382-01 20 62221599 62221599 G A GMEB2 Missense_Mutation p.T479M 0.13 deleterious(0) probably_damaging(0.944) TCGA-BR-8382-01 20 62364695 62364695 C T ZGPAT Missense_Mutation p.R237C 0.16 deleterious(0) probably_damaging(0.953) TCGA-BR-8382-01 21 22790790 22790790 C T NCAM2 Intron 0.19 TCGA-BR-8382-01 21 30303519 30303519 T - LTN1 Frame_Shift_Del p.A1779Pfs*44 0.18 TCGA-BR-8382-01 21 32253379 32253379 G A KRTAP11-1 Silent p.C155C 0.16 TCGA-BR-8382-01 21 32617947 32617947 C T TIAM1 Missense_Mutation p.G481S 0.16 tolerated(0.09) possibly_damaging(0.524) TCGA-BR-8382-01 21 34051043 34051043 C T SYNJ1 Silent p.E513E 0.11 TCGA-BR-8382-01 21 34721401 34721401 T - IFNAR1 Frame_Shift_Del p.L266* 0.16 TCGA-BR-8382-01 21 34882226 34882226 A G GART Silent p.G772G 0.31 TCGA-BR-8382-01 21 34903066 34903066 T C GART Missense_Mutation p.Q241R 0.18 tolerated(0.09) probably_damaging(0.962) TCGA-BR-8382-01 21 38522411 38522411 T C TTC3 Missense_Mutation p.C718R 0.19 deleterious(0) probably_damaging(0.999) TCGA-BR-8382-01 21 43531464 43531464 A C UMODL1 Missense_Mutation p.E711A 0.11 tolerated(0.98) benign(0) TCGA-BR-8382-01 21 46275129 46275129 T - PTTG1IP Frame_Shift_Del p.K164Nfs*89 0.20 TCGA-BR-8382-01 21 46645557 46645557 A G ADARB1 3'UTR 0.12 TCGA-BR-8382-01 21 46689763 46689763 C T POFUT2 Missense_Mutation p.V335I 0.14 tolerated(0.23) benign(0.003) TCGA-BR-8382-01 21 47401807 47401807 T C COL6A1 Missense_Mutation p.C15R 0.45 tolerated(0.07) unknown(0) TCGA-BR-8382-01 21 47552160 47552160 C T COL6A2 Silent p.G918G 0.15 TCGA-BR-8382-01 21 47841889 47841889 G A PCNT Missense_Mutation p.G2344S 0.15 probably_damaging(0.937) TCGA-BR-8382-01 22 18072980 18072980 G A SLC25A18 Missense_Mutation p.R309H 0.19 tolerated(0.53) benign(0.003) TCGA-BR-8382-01 22 19130370 19130370 T G DGCR14 Missense_Mutation p.D58A 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8382-01 22 19511290 19511290 C T CLDN5 Silent p.A248A 0.20 TCGA-BR-8382-01 22 19748693 19748693 G A TBX1 Silent p.P100P 0.22 TCGA-BR-8382-01 22 19961272 19961272 C T ARVCF Silent p.L711L 0.22 TCGA-BR-8382-01 22 20230301 20230301 G A RTN4R Missense_Mutation p.R119W 0.28 deleterious(0) probably_damaging(0.973) TCGA-BR-8382-01 22 22279923 22279923 C T PPM1F Intron 0.20 TCGA-BR-8382-01 22 22842043 22842043 T - ZNF280B 3'UTR 0.14 TCGA-BR-8382-01 22 23438138 23438138 C T GNAZ Missense_Mutation p.R86W 0.16 deleterious(0.01) benign(0.147) TCGA-BR-8382-01 22 24572175 24572175 C T CABIN1 Missense_Mutation p.P2046L 0.15 tolerated_low_confidence(0.36) benign(0.001) TCGA-BR-8382-01 22 24574128 24574128 C T CABIN1 Silent p.S2209S 0.15 TCGA-BR-8382-01 22 25024064 25024064 G A GGT1 Silent p.S451S 0.15 TCGA-BR-8382-01 22 25601264 25601264 C T CRYBB3 Silent p.D135D 0.27 TCGA-BR-8382-01 22 26860585 26860585 C T HPS4 Silent p.R337R 0.15 TCGA-BR-8382-01 22 28193443 28193443 C T MN1 Missense_Mutation p.G1030D 0.13 benign(0.406) TCGA-BR-8382-01 22 29449693 29449693 T - ZNRF3 3'UTR 0.15 TCGA-BR-8382-01 22 29656437 29656437 C T RHBDD3 Silent p.P287P 0.21 TCGA-BR-8382-01 22 29879422 29879422 G A NEFH Silent p.A314A 0.17 TCGA-BR-8382-01 22 31091509 31091509 G A OSBP2 Missense_Mutation p.V205M 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-BR-8382-01 22 31674530 31674530 C T LIMK2 3'Flank 0.12 TCGA-BR-8382-01 22 32200851 32200851 T C DEPDC5 Silent p.R389R 0.18 TCGA-BR-8382-01 22 36714278 36714278 C T MYH9 Missense_Mutation p.V401I 0.15 possibly_damaging(0.502) TCGA-BR-8382-01 22 37524763 37524763 C T IL2RB Silent p.V343V 0.09 TCGA-BR-8382-01 22 37769104 37769104 G - ELFN2 3'UTR 0.24 TCGA-BR-8382-01 22 38016860 38016860 C A GGA1 Silent p.T156T 0.18 TCGA-BR-8382-01 22 38531068 38531068 A G PLA2G6 Missense_Mutation p.M274T 0.10 tolerated(0.59) benign(0.002) TCGA-BR-8382-01 22 38933618 38933618 G A DMC1 Missense_Mutation p.A272V 0.15 deleterious(0) possibly_damaging(0.639) TCGA-BR-8382-01 22 39263058 39263058 C T CBX6 Missense_Mutation p.R132H 0.31 deleterious(0) possibly_damaging(0.84) TCGA-BR-8382-01 22 41310311 41310311 G A XPNPEP3 Silent p.T346T 0.12 TCGA-BR-8382-01 22 41566520 41566520 G T EP300 Missense_Mutation p.W1466L 0.21 probably_damaging(1) TCGA-BR-8382-01 22 42998873 42998873 C T POLDIP3 Missense_Mutation p.R118Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-BR-8382-01 22 43617179 43617179 C A SCUBE1 Missense_Mutation p.D517Y 0.16 deleterious(0.01) possibly_damaging(0.713) TCGA-BR-8382-01 22 43924750 43924750 G A EFCAB6 Missense_Mutation p.R1497W 0.23 tolerated(0.06) probably_damaging(0.999) TCGA-BR-8382-01 22 46704465 46704465 T A GTSE1 Silent p.P129P 0.15 TCGA-BR-8382-01 22 47022684 47022684 C A GRAMD4 5'UTR 0.15 TCGA-BR-8382-01 22 50187724 50187724 C T BRD1 Missense_Mutation p.E773K 0.14 tolerated(0.26) benign(0.349) TCGA-BR-8382-01 22 50615792 50615792 C T PANX2 Silent p.R217R 0.15 TCGA-BR-8382-01 22 50617461 50617461 G A PANX2 Missense_Mutation p.A597T 0.24 tolerated_low_confidence(0.3) benign(0.002) TCGA-BR-8382-01 22 50885994 50885994 G T SBF1 Missense_Mutation p.P1803H 0.14 deleterious(0.02) possibly_damaging(0.703) TCGA-BR-8382-01 2 11312071 11312071 C T PQLC3 Silent p.S125S 0.17 TCGA-BR-8382-01 2 114500441 114500441 C T SLC35F5 Missense_Mutation p.R193H 0.22 tolerated(0.14) possibly_damaging(0.701) TCGA-BR-8382-01 2 122000030 122000030 G A TFCP2L1 Missense_Mutation p.R225W 0.14 deleterious(0) probably_damaging(0.998) TCGA-BR-8382-01 2 130949655 130949655 G A TUBA3E Silent p.L368L 0.21 TCGA-BR-8382-01 2 1457590 1457590 C - TPO Frame_Shift_Del p.P204Rfs*5 0.16 TCGA-BR-8382-01 2 152695680 152695680 G A CACNB4 Nonsense_Mutation p.R506* 0.25 TCGA-BR-8382-01 2 153575066 153575066 T C ARL6IP6 5'UTR 0.21 TCGA-BR-8382-01 2 160242867 160242867 G A BAZ2B Silent p.Y1156Y 0.18 TCGA-BR-8382-01 2 161159865 161159865 G A RBMS1 Missense_Mutation p.T179I 0.23 tolerated(0.24) benign(0.085) TCGA-BR-8382-01 2 163074649 163074649 C A FAP Missense_Mutation p.E203D 0.16 tolerated(0.07) possibly_damaging(0.531) TCGA-BR-8382-01 2 166536162 166536162 A G CSRNP3 Missense_Mutation p.I553V 0.21 tolerated_low_confidence(1) benign(0) TCGA-BR-8382-01 2 169938088 169938088 A - DHRS9 5'UTR p.M1? 0.19 TCGA-BR-8382-01 2 172411336 172411336 A - CYBRD1 Frame_Shift_Del 0.12 TCGA-BR-8382-01 2 173337510 173337510 T - ITGA6 Intron 0.19 TCGA-BR-8382-01 2 174774753 174774753 G T SP3 Silent p.S754S 0.15 TCGA-BR-8382-01 2 176972292 176972292 G A HOXD11 Missense_Mutation p.R70H 0.14 tolerated(0.28) benign(0.086) TCGA-BR-8382-01 2 179425103 179425103 T C TTN Missense_Mutation p.I28586V 0.14 TCGA-BR-8382-01 2 179469726 179469726 C T TTN Missense_Mutation p.V18060I 0.14 TCGA-BR-8382-01 2 179542916 179542916 C A TTN Missense_Mutation p.K11310N 0.21 TCGA-BR-8382-01 2 179577126 179577126 T C TTN Missense_Mutation p.T9175A 0.12 TCGA-BR-8382-01 2 184025805 184025805 A - NUP35 Frame_Shift_Del p.D312Mfs*26 0.13 TCGA-BR-8382-01 2 191300954 191300954 G A MFSD6 Missense_Mutation p.D67N 0.15 deleterious(0.01) possibly_damaging(0.701) TCGA-BR-8382-01 2 197085637 197085637 C - HECW2 Frame_Shift_Del p.G1392Vfs*19 0.13 TCGA-BR-8382-01 2 198327368 198327368 T G COQ10B Nonsense_Mutation p.Y120* 0.12 TCGA-BR-8382-01 2 200789976 200789976 A C C2orf69 Silent p.P175P 0.24 TCGA-BR-8382-01 2 208986445 208986445 G - CRYGD Frame_Shift_Del p.T160Rfs*8 0.13 TCGA-BR-8382-01 2 219677014 219677014 G A CYP27A1 Silent p.A172A 0.15 TCGA-BR-8382-01 2 220421238 220421238 T C OBSL1 Missense_Mutation p.D1425G 0.19 deleterious(0.01) probably_damaging(0.992) TCGA-BR-8382-01 2 220502442 220502442 C T SLC4A3 Missense_Mutation p.T919M 0.20 deleterious(0) probably_damaging(1) TCGA-BR-8382-01 2 228681804 228681805 TG - CCL20 3'UTR 0.13 TCGA-BR-8382-01 2 233759451 233759451 C - NGEF Intron 0.23 TCGA-BR-8382-01 2 236949398 236949398 C T AGAP1 Missense_Mutation p.R602W 0.15 deleterious(0.01) probably_damaging(0.987) TCGA-BR-8382-01 2 237415943 237415943 C T IQCA1 5'UTR 0.20 TCGA-BR-8382-01 2 241706365 241706365 C T KIF1A Missense_Mutation p.V551I 0.27 tolerated(1) benign(0.001) TCGA-BR-8382-01 2 242181952 242181952 C T HDLBP Missense_Mutation p.D698N 0.13 deleterious(0.04) benign(0.187) TCGA-BR-8382-01 2 243056848 243056848 A - AC093642.5 RNA 0.12 TCGA-BR-8382-01 2 26684616 26684616 C T OTOF Silent p.R1827R 0.16 TCGA-BR-8382-01 2 27157457 27157457 C T DPYSL5 Silent p.L268L 0.18 TCGA-BR-8382-01 2 27804551 27804551 T A C2orf16 Silent p.G1704G 0.19 TCGA-BR-8382-01 2 33567940 33567940 A C LTBP1 Missense_Mutation p.S1256R 0.12 tolerated(0.26) benign(0.027) TCGA-BR-8382-01 2 33588554 33588554 G A LTBP1 Silent p.T1456T 0.23 TCGA-BR-8382-01 2 33952748 33952748 G A AC009499.1 Intron 0.11 TCGA-BR-8382-01 2 54482990 54482990 G A TSPYL6 Missense_Mutation p.A100V 0.25 tolerated(0.08) benign(0.118) TCGA-BR-8382-01 2 55570930 55570930 T - CCDC88A Splice_Site p.X397_splice 0.30 TCGA-BR-8382-01 2 61633020 61633020 T - USP34 Frame_Shift_Del p.K125Nfs*10 0.17 TCGA-BR-8382-01 2 66798629 66798629 A G MEIS1 3'UTR 0.45 TCGA-BR-8382-01 2 68361749 68361749 A - WDR92 Intron 0.17 TCGA-BR-8382-01 2 70439666 70439666 G A TIA1 3'UTR 0.28 TCGA-BR-8382-01 2 70903863 70903863 C A ADD2 Intron 0.21 TCGA-BR-8382-01 2 71351665 71351665 A - MCEE Frame_Shift_Del p.S17Pfs*10 0.18 TCGA-BR-8382-01 2 71361861 71361861 A G MPHOSPH10 Silent p.T344T 0.20 TCGA-BR-8382-01 2 71795404 71795404 G T DYSF Missense_Mutation p.D934Y 0.14 deleterious(0) probably_damaging(0.914) TCGA-BR-8382-01 2 71909668 71909668 A G DYSF Missense_Mutation p.D2061G 0.10 deleterious(0) possibly_damaging(0.557) TCGA-BR-8382-01 2 74273836 74273836 G A TET3 Silent p.R129R 0.13 TCGA-BR-8382-01 2 74683363 74683363 G T INO80B Missense_Mutation p.K168N 0.23 deleterious(0.01) probably_damaging(0.991) TCGA-BR-8382-01 2 74687177 74687180 GTGA - WBP1 Splice_Site p.X117_splice 0.14 TCGA-BR-8382-01 2 74761728 74761728 G T LOXL3 Missense_Mutation p.H585N 0.11 deleterious(0.01) possibly_damaging(0.725) TCGA-BR-8382-01 2 77748917 77748917 C T LRRTM4 Intron 0.11 TCGA-BR-8382-01 2 86697368 86697368 A - KDM3A Frame_Shift_Del p.K522Sfs*16 0.16 TCGA-BR-8382-01 2 8926140 8926140 T - KIDINS220 Frame_Shift_Del p.T654Hfs*34 0.09 TCGA-BR-8382-01 2 95494773 95494773 C A ANKRD20A8P RNA 0.14 TCGA-BR-8382-01 2 97526594 97526594 C - SEMA4C Frame_Shift_Del p.P759Lfs*36 0.20 TCGA-BR-8382-01 2 98340609 98340609 G A ZAP70 Missense_Mutation p.R37H 0.16 deleterious(0) probably_damaging(1) TCGA-BR-8382-01 3 100413765 100413765 C T GPR128 Missense_Mutation p.R772C 0.18 deleterious(0) possibly_damaging(0.77) TCGA-BR-8382-01 3 101038523 101038523 C T IMPG2 Missense_Mutation p.R80Q 0.14 tolerated(0.06) benign(0.037) TCGA-BR-8382-01 3 10276206 10276206 G A IRAK2 Missense_Mutation p.V446M 0.08 tolerated(0.2) benign(0.072) TCGA-BR-8382-01 3 112738501 112738502 - G C3orf17 5'UTR 0.22 TCGA-BR-8382-01 3 113955576 113955576 G A ZNF80 Missense_Mutation p.R116C 0.30 tolerated(0.1) possibly_damaging(0.826) TCGA-BR-8382-01 3 114058003 114058003 G - ZBTB20 Frame_Shift_Del p.P692Lfs*43 0.29 TCGA-BR-8382-01 3 114069871 114069871 C T ZBTB20 Missense_Mutation p.E352K 0.23 deleterious(0.05) possibly_damaging(0.905) TCGA-BR-8382-01 3 119459480 119459480 A - MAATS1 Frame_Shift_Del p.A542Pfs*5 0.11 TCGA-BR-8382-01 3 121200437 121200437 G A POLQ Nonsense_Mutation p.Q2065* 0.12 TCGA-BR-8382-01 3 121415133 121415133 C T GOLGB1 Missense_Mutation p.V1413I 0.18 benign(0.004) TCGA-BR-8382-01 3 125690888 125690888 C T ROPN1B Intron 0.14 TCGA-BR-8382-01 3 126178522 126178522 T - ZXDC Frame_Shift_Del p.K729Sfs*19 0.16 TCGA-BR-8382-01 3 127335840 127335840 C T MCM2 Missense_Mutation p.A551V 0.15 deleterious(0) probably_damaging(0.998) TCGA-BR-8382-01 3 128889280 128889280 C T CNBP 3'UTR 0.15 TCGA-BR-8382-01 3 129389916 129389916 G A TMCC1 Silent p.D256D 0.13 TCGA-BR-8382-01 3 12977013 12977013 C T IQSEC1 Silent p.S515S 0.13 TCGA-BR-8382-01 3 132438576 132438576 G A NPHP3 Silent p.D164D 0.08 TCGA-BR-8382-01 3 137843319 137843319 G A A4GNT Silent p.R270R 0.19 TCGA-BR-8382-01 3 147108882 147108882 C T ZIC4 Silent p.S330S 0.23 TCGA-BR-8382-01 3 148802525 148802525 C T HLTF Missense_Mutation p.V58I 0.27 tolerated(0.33) benign(0.005) TCGA-BR-8382-01 3 148872966 148872966 G A HPS3 Silent p.V491V 0.10 TCGA-BR-8382-01 3 150460061 150460061 C T SIAH2 Missense_Mutation p.R281H 0.25 deleterious(0.04) benign(0.21) TCGA-BR-8382-01 3 151082765 151082765 A C MED12L Splice_Site p.X951_splice 0.15 TCGA-BR-8382-01 3 164716334 164716334 T A SI Missense_Mutation p.I1512F 0.20 deleterious(0) probably_damaging(0.942) TCGA-BR-8382-01 3 170185060 170185060 T C SLC7A14 Missense_Mutation p.D700G 0.21 deleterious(0.01) benign(0.416) TCGA-BR-8382-01 3 179459997 179459997 G A USP13 Missense_Mutation p.G465S 0.23 tolerated(0.45) benign(0.02) TCGA-BR-8382-01 3 180666221 180666221 A G FXR1 Silent p.K119K 0.20 TCGA-BR-8382-01 3 182946030 182946030 G A MCF2L2 Intron 0.16 TCGA-BR-8382-01 3 183822019 183822019 T C HTR3E Missense_Mutation p.I110T 0.15 tolerated(0.12) benign(0.141) TCGA-BR-8382-01 3 183883972 183883972 C T DVL3 Silent p.G274G 0.14 TCGA-BR-8382-01 3 184035263 184035263 G T EIF4G1 Missense_Mutation p.G108V 0.14 deleterious(0.01) probably_damaging(0.997) TCGA-BR-8382-01 3 184040486 184040486 A G EIF4G1 Missense_Mutation p.Q595R 0.16 tolerated(0.07) benign(0.147) TCGA-BR-8382-01 3 186953630 186953630 G A MASP1 Missense_Mutation p.R677C 0.18 deleterious(0) possibly_damaging(0.765) TCGA-BR-8382-01 3 189038571 189038571 C T TPRG1 Missense_Mutation p.L264F 0.19 deleterious(0) probably_damaging(0.998) TCGA-BR-8382-01 3 189349368 189349368 T C TP63 Splice_Site p.X21_splice 0.13 TCGA-BR-8382-01 3 195481147 195481147 C T MUC4 Missense_Mutation p.V5089I 0.10 benign(0.191) TCGA-BR-8382-01 3 197751625 197751625 T C LMLN Missense_Mutation p.L578P 0.20 tolerated(0.12) possibly_damaging(0.602) TCGA-BR-8382-01 3 24138673 24138673 C T LINC00691 RNA 0.21 TCGA-BR-8382-01 3 31705656 31705656 C T OSBPL10 Missense_Mutation p.R722Q 0.16 tolerated(0.14) benign(0.149) TCGA-BR-8382-01 3 38039115 38039115 C T VILL Missense_Mutation p.R235C 0.12 deleterious(0.05) benign(0.015) TCGA-BR-8382-01 3 38524694 38524694 C T ACVR2B Silent p.S470S 0.19 TCGA-BR-8382-01 3 39227344 39227344 C - XIRP1 Frame_Shift_Del p.G1198Afs*29 0.15 TCGA-BR-8382-01 3 40557930 40557930 G A ZNF620 Missense_Mutation p.C282Y 0.09 deleterious(0) probably_damaging(1) TCGA-BR-8382-01 3 43732505 43732507 GGT - ABHD5 In_Frame_Del p.V8del 0.10 TCGA-BR-8382-01 3 4452611 4452611 C T SUMF1 Missense_Mutation p.A298T 0.20 deleterious(0.01) possibly_damaging(0.663) TCGA-BR-8382-01 3 44929185 44929185 G A TGM4 Silent p.P66P 0.12 TCGA-BR-8382-01 3 45132792 45132792 G A CDCP1 Silent p.D622D 0.15 TCGA-BR-8382-01 3 45942873 45942873 G A CCR9 Missense_Mutation p.C198Y 0.10 deleterious(0) probably_damaging(1) TCGA-BR-8382-01 3 4683889 4683889 G T ITPR1 Missense_Mutation p.W160L 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8382-01 3 47316957 47316957 T - KIF9 Frame_Shift_Del p.D40Tfs*64 0.18 TCGA-BR-8382-01 3 47452322 47452322 C - PTPN23 Frame_Shift_Del p.L1014Yfs*146 0.12 TCGA-BR-8382-01 3 4821278 4821278 C T ITPR1 Silent p.H2097H 0.12 TCGA-BR-8382-01 3 49168514 49168514 G T LAMB2 Missense_Mutation p.P262T 0.13 tolerated(0.28) benign(0.038) TCGA-BR-8382-01 3 51101994 51101994 G A DOCK3 Missense_Mutation p.R144Q 0.22 tolerated(0.39) probably_damaging(0.99) TCGA-BR-8382-01 3 51993974 51993974 C T PCBP4 Silent p.T151T 0.19 TCGA-BR-8382-01 3 52183364 52183364 A G POC1A Missense_Mutation p.V106A 0.17 deleterious(0.05) probably_damaging(0.997) TCGA-BR-8382-01 3 52521807 52521807 G A NISCH Missense_Mutation p.D767N 0.21 tolerated(0.07) probably_damaging(0.994) TCGA-BR-8382-01 3 52522496 52522496 C T NISCH Silent p.R996R 0.15 TCGA-BR-8382-01 3 52682400 52682400 T - PBRM1 Frame_Shift_Del p.N258Mfs*25 0.09 TCGA-BR-8382-01 3 52702537 52702537 T A PBRM1 Missense_Mutation p.N121Y 0.28 deleterious(0) possibly_damaging(0.877) TCGA-BR-8382-01 3 52702554 52702554 T A PBRM1 Missense_Mutation p.D115V 0.24 deleterious(0) probably_damaging(0.944) TCGA-BR-8382-01 3 53736702 53736702 C T CACNA1D Missense_Mutation p.R419W 0.22 deleterious(0) probably_damaging(0.999) TCGA-BR-8382-01 3 62258636 62258636 A C PTPRG Missense_Mutation p.R1066S 0.15 deleterious(0.02) probably_damaging(0.999) TCGA-BR-8382-01 3 63981710 63981711 TG - ATXN7 Frame_Shift_Del p.V739Gfs*16 0.14 TCGA-BR-8382-01 3 7721878 7721878 C T GRM7 Missense_Mutation p.A865V 0.23 deleterious(0.01) probably_damaging(0.986) TCGA-BR-8382-01 3 8809115 8809115 C - OXTR Frame_Shift_Del p.R254Afs*23 0.31 TCGA-BR-8382-01 3 99514770 99514770 G T COL8A1 Missense_Mutation p.W675C 0.18 deleterious(0) probably_damaging(1) TCGA-BR-8382-01 4 100129893 100129895 CTT - ADH6 In_Frame_Del p.E253del 0.20 TCGA-BR-8382-01 4 103822279 103822279 G T SLC9B1 Missense_Mutation p.H515N 0.12 tolerated(0.06) benign(0.236) TCGA-BR-8382-01 4 106157081 106157081 A G TET2 Missense_Mutation p.H661R 0.21 tolerated(0.86) benign(0.003) TCGA-BR-8382-01 4 108866530 108866530 A - CYP2U1 Frame_Shift_Del p.I301Sfs*18 0.11 TCGA-BR-8382-01 4 110606496 110606496 C T CCDC109B Silent p.Y302Y 0.12 TCGA-BR-8382-01 4 115858656 115858656 G A NDST4 Missense_Mutation p.H409Y 0.22 tolerated(0.06) probably_damaging(0.988) TCGA-BR-8382-01 4 123202741 123202741 C A KIAA1109 Missense_Mutation p.T2950N 0.19 benign(0.25) TCGA-BR-8382-01 4 123237962 123237962 C T KIAA1109 Missense_Mutation p.R3539C 0.22 probably_damaging(0.998) TCGA-BR-8382-01 4 141543721 141543721 G A TBC1D9 Silent p.N1143N 0.19 TCGA-BR-8382-01 4 151000236 151000236 G A DCLK2 Silent p.P19P 0.25 TCGA-BR-8382-01 4 152629223 152629223 G A PET112 Missense_Mutation p.S265F 0.13 deleterious(0) probably_damaging(1) TCGA-BR-8382-01 4 153864507 153864507 T - FHDC1 Frame_Shift_Del p.W102Gfs*55 0.17 TCGA-BR-8382-01 4 155665737 155665737 C T LRAT Missense_Mutation p.R87C 0.15 tolerated(0.18) possibly_damaging(0.846) TCGA-BR-8382-01 4 156135336 156135336 G A NPY2R Missense_Mutation p.R82H 0.13 tolerated(0.1) benign(0.05) TCGA-BR-8382-01 4 158233993 158233993 G A GRIA2 Missense_Mutation p.C211Y 0.18 deleterious(0) probably_damaging(0.995) TCGA-BR-8382-01 4 159091771 159091771 C T FAM198B Missense_Mutation p.A253T 0.23 tolerated(0.76) benign(0.025) TCGA-BR-8382-01 4 159493936 159493936 C T RXFP1 Missense_Mutation p.H46Y 0.13 deleterious(0) benign(0.082) TCGA-BR-8382-01 4 159526258 159526258 A G RXFP1 Missense_Mutation p.D144G 0.16 tolerated(0.15) benign(0.005) TCGA-BR-8382-01 4 159782571 159782571 A - FNIP2 Frame_Shift_Del p.N411Tfs*14 0.14 TCGA-BR-8382-01 4 159789993 159789994 - A FNIP2 Frame_Shift_Ins p.M738Nfs*16 0.14 TCGA-BR-8382-01 4 169108671 169108671 C T ANXA10 3'UTR 0.38 TCGA-BR-8382-01 4 169336605 169336605 A C DDX60L Missense_Mutation p.V978G 0.19 tolerated(0.11) benign(0.285) TCGA-BR-8382-01 4 170428879 170428880 - T NEK1 Frame_Shift_Ins p.I633Nfs*28 0.15 TCGA-BR-8382-01 4 175898136 175898136 G A ADAM29 Missense_Mutation p.C487Y 0.23 deleterious(0) probably_damaging(1) TCGA-BR-8382-01 4 17847433 17847433 G A NCAPG 3'Flank 0.15 TCGA-BR-8382-01 4 183267894 183267894 G T TENM3 Missense_Mutation p.R108I 0.15 tolerated_low_confidence(0.06) possibly_damaging(0.639) TCGA-BR-8382-01 4 184930580 184930580 G A STOX2 Missense_Mutation p.D197N 0.22 tolerated(0.22) benign(0.007) TCGA-BR-8382-01 4 188924176 188924176 A G ZFP42 Missense_Mutation p.Y72C 0.20 deleterious(0) probably_damaging(0.998) TCGA-BR-8382-01 4 189068025 189068025 G A TRIML1 Silent p.S302S 0.14 TCGA-BR-8382-01 4 2073762 2073762 G A POLN 3'UTR 0.21 TCGA-BR-8382-01 4 25849008 25849008 G T SEL1L3 Missense_Mutation p.P214H 0.16 deleterious(0) probably_damaging(1) TCGA-BR-8382-01 4 30724711 30724711 C T PCDH7 Missense_Mutation p.T556M 0.19 deleterious(0.03) probably_damaging(0.983) TCGA-BR-8382-01 4 3451076 3451076 G A HGFAC Missense_Mutation p.R633H 0.20 deleterious(0.02) probably_damaging(0.998) TCGA-BR-8382-01 4 39408583 39408583 G A KLB Missense_Mutation p.C5Y 0.21 tolerated_low_confidence(0.2) benign(0.005) TCGA-BR-8382-01 4 39448221 39448221 C T KLB Silent p.C625C 0.21 TCGA-BR-8382-01 4 47559697 47559698 - G ATP10D Frame_Shift_Ins p.L617Vfs*4 0.16 TCGA-BR-8382-01 4 47901013 47901013 A T NFXL1 Silent p.L317L 0.24 TCGA-BR-8382-01 4 52943184 52943184 G A SPATA18 Missense_Mutation p.R333Q 0.21 deleterious(0.01) probably_damaging(0.947) TCGA-BR-8382-01 4 55138612 55138612 G A PDGFRA Missense_Mutation p.G430E 0.17 tolerated(0.69) benign(0.008) TCGA-BR-8382-01 4 56736875 56736875 A G EXOC1 Missense_Mutation p.K212R 0.12 tolerated(0.1) possibly_damaging(0.826) TCGA-BR-8382-01 4 66467570 66467570 G A EPHA5 Silent p.C233C 0.17 TCGA-BR-8382-01 4 678306 678306 A G MFSD7 Missense_Mutation p.L269P 0.18 deleterious(0) probably_damaging(0.99) TCGA-BR-8382-01 4 68784721 68784721 T C TMPRSS11A Missense_Mutation p.I311V 0.26 tolerated(1) benign(0.078) TCGA-BR-8382-01 4 68938119 68938119 T - TMPRSS11F Frame_Shift_Del p.I146Lfs*9 0.18 TCGA-BR-8382-01 4 727522 727522 G A PCGF3 Missense_Mutation p.R18H 0.17 tolerated(0.54) possibly_damaging(0.8) TCGA-BR-8382-01 4 7776532 7776532 G A AFAP1 Missense_Mutation p.R666W 0.20 deleterious(0) probably_damaging(0.999) TCGA-BR-8382-01 4 79373470 79373470 A C FRAS1 Missense_Mutation p.Q2242P 0.11 benign(0.323) TCGA-BR-8382-01 4 8233879 8233879 G A SH3TC1 Missense_Mutation p.E1043K 0.22 deleterious(0.02) probably_damaging(0.999) TCGA-BR-8382-01 4 8407708 8407708 T - ACOX3 Frame_Shift_Del p.K250Nfs*25 0.17 TCGA-BR-8382-01 4 84374584 84374584 T - HELQ Frame_Shift_Del p.N271Mfs*3 0.19 TCGA-BR-8382-01 4 94032058 94032058 C T GRID2 Missense_Mutation p.A230V 0.06 tolerated(0.34) probably_damaging(0.957) TCGA-BR-8382-01 4 95539205 95539205 G A PDLIM5 Missense_Mutation p.R353Q 0.26 tolerated(0.25) benign(0.006) TCGA-BR-8382-01 5 101834417 101834417 G A SLCO6A1 Silent p.P44P 0.16 TCGA-BR-8382-01 5 110836635 110836635 C A STARD4 Intron 0.17 TCGA-BR-8382-01 5 112399732 112399732 G A MCC Missense_Mutation p.A721V 0.14 tolerated(0.61) benign(0.049) TCGA-BR-8382-01 5 127487003 127487003 A T SLC12A2 Silent p.V726V 0.19 TCGA-BR-8382-01 5 129037216 129037216 G T ADAMTS19 Missense_Mutation p.K1024N 0.16 deleterious(0) possibly_damaging(0.47) TCGA-BR-8382-01 5 1294681 1294681 G T TERT Missense_Mutation p.A107D 0.26 tolerated(0.47) benign(0.342) TCGA-BR-8382-01 5 131606734 131606734 G A PDLIM4 Missense_Mutation p.E152K 0.26 tolerated(0.13) benign(0.296) TCGA-BR-8382-01 5 131973851 131973851 G A RAD50 Missense_Mutation p.R1185Q 0.27 deleterious(0) probably_damaging(1) TCGA-BR-8382-01 5 135567162 135567162 G A TRPC7 Silent p.Y640Y 0.21 TCGA-BR-8382-01 5 136476321 136476322 - CA SPOCK1 Frame_Shift_Ins p.T99* 0.13 TCGA-BR-8382-01 5 13729585 13729585 A C DNAH5 Missense_Mutation p.L3949R 0.18 probably_damaging(0.928) TCGA-BR-8382-01 5 13751371 13751371 T - DNAH5 Splice_Site p.X3677_splice 0.36 TCGA-BR-8382-01 5 137599951 137599951 A G GFRA3 Silent p.L126L 0.12 TCGA-BR-8382-01 5 137599991 137599991 C T GFRA3 Missense_Mutation p.C113Y 0.12 deleterious(0) probably_damaging(1) TCGA-BR-8382-01 5 137708479 137708479 C T KDM3B Silent p.D103D 0.12 TCGA-BR-8382-01 5 139740384 139740384 A - SLC4A9 Frame_Shift_Del p.H97Pfs*61 0.17 TCGA-BR-8382-01 5 140215698 140215698 T C PCDHA7 Missense_Mutation p.V577A 0.19 tolerated_low_confidence(0.14) benign(0.015) TCGA-BR-8382-01 5 140222458 140222458 T C PCDHA8 Missense_Mutation p.Y518H 0.16 deleterious_low_confidence(0.03) benign(0.144) TCGA-BR-8382-01 5 140242354 140242354 C T AC005609.1 3'UTR 0.24 TCGA-BR-8382-01 5 140249249 140249249 G A PCDHA11 Silent p.K187K 0.07 TCGA-BR-8382-01 5 140256404 140256404 C T PCDHA12 Silent p.N449N 0.19 TCGA-BR-8382-01 5 140257030 140257030 C T PCDHA12 Missense_Mutation p.A658V 0.12 tolerated_low_confidence(0.11) benign(0.158) TCGA-BR-8382-01 5 140346798 140346798 G A PCDHAC2 Silent p.P149P 0.17 TCGA-BR-8382-01 5 140474496 140474496 C T PCDHB2 Missense_Mutation p.T41M 0.12 tolerated_low_confidence(0.29) possibly_damaging(0.474) TCGA-BR-8382-01 5 140480564 140480564 C T PCDHB3 Nonsense_Mutation p.Q111* 0.22 TCGA-BR-8382-01 5 140482112 140482112 G A PCDHB3 Missense_Mutation p.A627T 0.17 tolerated_low_confidence(0.21) benign(0.042) TCGA-BR-8382-01 5 140536905 140536905 C T PCDHB17 Silent p.S443S 0.18 TCGA-BR-8382-01 5 140564388 140564388 G A PCDHB16 Missense_Mutation p.E752K 0.17 deleterious_low_confidence(0.02) benign(0.368) TCGA-BR-8382-01 5 140580935 140580935 C T PCDHB11 Missense_Mutation p.R530C 0.21 deleterious_low_confidence(0.02) benign(0.052) TCGA-BR-8382-01 5 140590609 140590609 G A PCDHB12 Silent p.A710A 0.20 TCGA-BR-8382-01 5 140626606 140626606 C A PCDHB15 Missense_Mutation p.T487N 0.17 deleterious_low_confidence(0.01) benign(0.068) TCGA-BR-8382-01 5 140751609 140751609 G A PCDHGB3 Missense_Mutation p.V550M 0.08 deleterious(0.01) probably_damaging(0.997) TCGA-BR-8382-01 5 140764749 140764749 G A PCDHGA7 Silent p.A761A 0.15 TCGA-BR-8382-01 5 140783914 140783914 C T PCDHGA9 Silent p.N465N 0.27 TCGA-BR-8382-01 5 140807542 140807542 C T PCDHGB6 Intron 0.10 TCGA-BR-8382-01 5 140807650 140807650 C A PCDHGB6 Intron 0.13 TCGA-BR-8382-01 5 14498708 14498708 A C TRIO Missense_Mutation p.D2764A 0.18 unknown(0) TCGA-BR-8382-01 5 147778563 147778563 T C FBXO38 Missense_Mutation p.Y44H 0.08 deleterious(0) probably_damaging(0.991) TCGA-BR-8382-01 5 151239373 151239373 C T GLRA1 Missense_Mutation p.R150Q 0.19 tolerated(0.24) benign(0.022) TCGA-BR-8382-01 5 158586021 158586021 G A RNF145 Missense_Mutation p.T580M 0.17 deleterious(0.04) probably_damaging(0.992) TCGA-BR-8382-01 5 159686753 159686753 G A CCNJL Silent p.H150H 0.18 TCGA-BR-8382-01 5 169677853 169677853 T - LCP2 Frame_Shift_Del p.T454Qfs*73 0.17 TCGA-BR-8382-01 5 171488254 171488254 T G STK10 Missense_Mutation p.K701Q 0.14 tolerated(0.19) probably_damaging(0.941) TCGA-BR-8382-01 5 171821626 171821626 G A SH3PXD2B Nonsense_Mutation p.R84* 0.12 TCGA-BR-8382-01 5 172195896 172195896 C T DUSP1 Missense_Mutation p.A325T 0.15 tolerated(0.33) benign(0.024) TCGA-BR-8382-01 5 175824994 175824994 T C CLTB Missense_Mutation p.T97A 0.16 tolerated(0.15) benign(0.046) TCGA-BR-8382-01 5 179045188 179045188 C A HNRNPH1 Nonsense_Mutation p.G225* 0.14 TCGA-BR-8382-01 5 179280382 179280382 A - C5orf45 Frame_Shift_Del p.L41Cfs*19 0.14 TCGA-BR-8382-01 5 179290716 179290716 G A TBC1D9B Missense_Mutation p.T1162M 0.13 deleterious_low_confidence(0) benign(0.31) TCGA-BR-8382-01 5 179305416 179305416 G A TBC1D9B Missense_Mutation p.R559C 0.24 deleterious(0) probably_damaging(1) TCGA-BR-8382-01 5 37183092 37183092 C A C5orf42 Nonsense_Mutation p.E1731* 0.19 TCGA-BR-8382-01 5 38960545 38960545 C T RICTOR Silent p.T602T 0.20 TCGA-BR-8382-01 5 41058308 41058308 G A MROH2B Intron 0.15 TCGA-BR-8382-01 5 43280418 43280418 C T NIM1K Nonsense_Mutation p.R300* 0.22 TCGA-BR-8382-01 5 5303727 5303727 G A ADAMTS16 Missense_Mutation p.A1012T 0.19 tolerated(0.31) benign(0.008) TCGA-BR-8382-01 5 5306762 5306762 C T ADAMTS16 Missense_Mutation p.P1111L 0.13 tolerated(0.43) benign(0) TCGA-BR-8382-01 5 56545258 56545260 CTC - GPBP1 In_Frame_Del p.P284del 0.27 TCGA-BR-8382-01 5 59284456 59284456 C T PDE4D Missense_Mutation p.R44H 0.21 tolerated_low_confidence(0.13) possibly_damaging(0.747) TCGA-BR-8382-01 5 63257400 63257400 G A HTR1A Silent p.C49C 0.08 TCGA-BR-8382-01 5 634017 634017 A G CEP72 Missense_Mutation p.S216G 0.16 tolerated(0.61) benign(0.022) TCGA-BR-8382-01 5 68728813 68728813 T - MARVELD2 Frame_Shift_Del p.S467Qfs*14 0.17 TCGA-BR-8382-01 5 71756924 71756924 C T ZNF366 Missense_Mutation p.V134M 0.15 deleterious_low_confidence(0.03) benign(0.044) TCGA-BR-8382-01 5 74034388 74034388 G A GFM2 Missense_Mutation p.R387C 0.14 deleterious(0) probably_damaging(1) TCGA-BR-8382-01 5 74681746 74681746 G A COL4A3BP Silent p.D594D 0.17 TCGA-BR-8382-01 5 77563404 77563404 C A AP3B1 Missense_Mutation p.K48N 0.11 deleterious(0) probably_damaging(0.954) TCGA-BR-8382-01 5 7900236 7900236 A G MTRR 3'UTR 0.20 TCGA-BR-8382-01 5 9122806 9122806 C T SEMA5A Silent p.Q581Q 0.27 TCGA-BR-8382-01 5 94852450 94852450 A G TTC37 Missense_Mutation p.L814P 0.28 deleterious(0) probably_damaging(0.954) TCGA-BR-8382-01 6 100062567 100062567 G T PRDM13 Missense_Mutation p.V686L 0.30 deleterious_low_confidence(0.02) probably_damaging(0.997) TCGA-BR-8382-01 6 10961554 10961554 C T SYCP2L Missense_Mutation p.R758C 0.12 tolerated(0.07) benign(0.003) TCGA-BR-8382-01 6 11193859 11193859 C T NEDD9 Missense_Mutation p.V176I 0.18 tolerated(1) benign(0.001) TCGA-BR-8382-01 6 112493824 112493824 G A LAMA4 Missense_Mutation p.R514W 0.26 deleterious(0) possibly_damaging(0.846) TCGA-BR-8382-01 6 117086316 117086316 C T FAM162B Missense_Mutation p.R92Q 0.21 tolerated(0.29) possibly_damaging(0.656) TCGA-BR-8382-01 6 117894635 117894635 C A GOPC Missense_Mutation p.G271C 0.18 deleterious(0.01) probably_damaging(0.91) TCGA-BR-8382-01 6 118886986 118886986 G A CEP85L Silent p.A245A 0.22 TCGA-BR-8382-01 6 12089462 12089463 - A HIVEP1 Frame_Shift_Ins p.E32Rfs*8 0.25 TCGA-BR-8382-01 6 122768329 122768329 T G SERINC1 Missense_Mutation p.Q311P 0.17 tolerated(0.23) benign(0.014) TCGA-BR-8382-01 6 132054763 132054766 CTGT - ENPP3 Frame_Shift_Del p.L665Gfs*18 0.11 TCGA-BR-8382-01 6 132792740 132792740 C T STX7 Splice_Site p.X84_splice 0.18 TCGA-BR-8382-01 6 137329814 137329814 C T IL20RA Missense_Mutation p.V216I 0.21 tolerated(0.15) possibly_damaging(0.517) TCGA-BR-8382-01 6 138727266 138727266 G T HEBP2 Missense_Mutation p.A133S 0.16 tolerated(0.33) benign(0.031) TCGA-BR-8382-01 6 13977703 13977703 T C RNF182 Missense_Mutation p.L118P 0.18 tolerated(0.22) possibly_damaging(0.646) TCGA-BR-8382-01 6 142409496 142409496 G A NMBR Silent p.D100D 0.20 TCGA-BR-8382-01 6 143094969 143094969 G A HIVEP2 Silent p.L303L 0.14 TCGA-BR-8382-01 6 144507947 144507947 C T STX11 Silent p.D61D 0.19 TCGA-BR-8382-01 6 150290471 150290471 C T ULBP1 Silent p.Y200Y 0.15 TCGA-BR-8382-01 6 152472791 152472791 G A SYNE1 Missense_Mutation p.A8116V 0.27 benign(0.276) TCGA-BR-8382-01 6 152560775 152560775 A G SYNE1 Missense_Mutation p.F6654L 0.16 benign(0.001) TCGA-BR-8382-01 6 15497226 15497226 C - JARID2 Frame_Shift_Del p.P592Lfs*57 0.12 TCGA-BR-8382-01 6 155450831 155450831 C - TIAM2 Frame_Shift_Del p.R160Efs*14 0.14 TCGA-BR-8382-01 6 160176302 160176302 C T WTAP Missense_Mutation p.R284C 0.16 deleterious(0.01) benign(0.292) TCGA-BR-8382-01 6 160176303 160176303 G A WTAP Missense_Mutation p.R284H 0.13 tolerated(0.26) benign(0) TCGA-BR-8382-01 6 161173964 161173964 G T PLG Missense_Mutation p.E768D 0.18 tolerated(0.6) benign(0.003) TCGA-BR-8382-01 6 169053728 169053728 A - SMOC2 Frame_Shift_Del p.K381Rfs*20 0.17 TCGA-BR-8382-01 6 170594100 170594100 C T DLL1 Missense_Mutation p.D386N 0.18 tolerated(0.78) benign(0.005) TCGA-BR-8382-01 6 170597853 170597853 C T DLL1 Missense_Mutation p.A126T 0.13 deleterious(0) probably_damaging(0.979) TCGA-BR-8382-01 6 170878836 170878836 G A TBP Missense_Mutation p.G272S 0.13 deleterious(0.03) benign(0.44) TCGA-BR-8382-01 6 18222307 18222307 A - KDM1B 3'UTR 0.11 TCGA-BR-8382-01 6 24358064 24358064 C T KAAG1 Missense_Mutation p.A66V 0.24 deleterious_low_confidence(0) possibly_damaging(0.873) TCGA-BR-8382-01 6 26250421 26250421 A G HIST1H3F 3'UTR 0.17 TCGA-BR-8382-01 6 30153714 30153714 C T TRIM26 Missense_Mutation p.R520Q 0.18 tolerated(0.43) unknown(0) TCGA-BR-8382-01 6 30671952 30671952 C T MDC1 Missense_Mutation p.V1670I 0.15 deleterious(0) benign(0.391) TCGA-BR-8382-01 6 30877746 30877746 C T GTF2H4 Missense_Mutation p.R94W 0.18 deleterious(0.02) probably_damaging(0.932) TCGA-BR-8382-01 6 3127585 3127585 C T BPHL Silent p.R107R 0.18 TCGA-BR-8382-01 6 31683367 31683367 G A LY6G6F 3'Flank 0.13 TCGA-BR-8382-01 6 31734394 31734394 G T VWA7 Missense_Mutation p.P677H 0.10 deleterious(0.01) possibly_damaging(0.896) TCGA-BR-8382-01 6 31778622 31778622 C T HSPA1L Silent p.A376A 0.19 TCGA-BR-8382-01 6 32166740 32166740 G A NOTCH4 Missense_Mutation p.R1500C 0.20 deleterious(0) probably_damaging(0.998) TCGA-BR-8382-01 6 33288764 33288764 C T DAXX Missense_Mutation p.R263H 0.21 deleterious(0.02) benign(0.189) TCGA-BR-8382-01 6 33652577 33652577 G A ITPR3 Missense_Mutation p.A1722T 0.20 tolerated(0.3) benign(0.006) TCGA-BR-8382-01 6 33656440 33656440 G A ITPR3 Silent p.P2192P 0.34 TCGA-BR-8382-01 6 33660616 33660616 C T ITPR3 Missense_Mutation p.R2524C 0.08 deleterious(0) probably_damaging(1) TCGA-BR-8382-01 6 35389648 35389648 C T PPARD Missense_Mutation p.R113C 0.13 deleterious(0) probably_damaging(0.97) TCGA-BR-8382-01 6 36714354 36714354 C A CPNE5 Missense_Mutation p.G340V 0.19 deleterious(0) probably_damaging(0.965) TCGA-BR-8382-01 6 3850301 3850301 C T FAM50B Missense_Mutation p.R86W 0.13 deleterious(0) possibly_damaging(0.893) TCGA-BR-8382-01 6 39835355 39835355 C T DAAM2 Silent p.H166H 0.14 TCGA-BR-8382-01 6 42796577 42796577 C T GLTSCR1L Missense_Mutation p.T169M 0.11 deleterious(0) possibly_damaging(0.907) TCGA-BR-8382-01 6 43020028 43020028 T C CUL7 Missense_Mutation p.M219V 0.21 deleterious(0.02) benign(0.045) TCGA-BR-8382-01 6 43141756 43141756 G A SRF Missense_Mutation p.D229N 0.16 deleterious(0.03) possibly_damaging(0.539) TCGA-BR-8382-01 6 43214373 43214373 C T TTBK1 5'UTR 0.18 TCGA-BR-8382-01 6 43612854 43612854 C A RSPH9 Missense_Mutation p.L7M 0.28 tolerated(0.22) possibly_damaging(0.82) TCGA-BR-8382-01 6 44275066 44275066 C T AARS2 Silent p.A320A 0.15 TCGA-BR-8382-01 6 45922893 45922893 A G CLIC5 Missense_Mutation p.V210A 0.14 deleterious(0) probably_damaging(0.958) TCGA-BR-8382-01 6 4892244 4892244 A - CDYL Frame_Shift_Del p.N109Tfs*27 0.16 TCGA-BR-8382-01 6 53387262 53387262 C - GCLC Frame_Shift_Del p.E72Rfs*30 0.19 TCGA-BR-8382-01 6 69349254 69349254 C A BAI3 Nonsense_Mutation p.C229* 0.16 TCGA-BR-8382-01 6 72011492 72011492 A - OGFRL1 Frame_Shift_Del p.V368Wfs*36 0.14 TCGA-BR-8382-01 6 76599952 76599952 G A MYO6 Missense_Mutation p.R946H 0.16 deleterious(0.04) benign(0.042) TCGA-BR-8382-01 6 78172950 78172950 C T HTR1B Silent p.A57A 0.16 TCGA-BR-8382-01 6 80720630 80720630 A - TTK Frame_Shift_Del p.K192Sfs*18 0.17 TCGA-BR-8382-01 6 82933168 82933168 C T IBTK Silent p.K371K 0.17 TCGA-BR-8382-01 6 90428228 90428228 C T MDN1 Nonsense_Mutation p.W2147* 0.17 TCGA-BR-8382-01 6 90428637 90428637 T G MDN1 Missense_Mutation p.Q2057P 0.18 possibly_damaging(0.61) TCGA-BR-8382-01 6 90453398 90453398 G A MDN1 Missense_Mutation p.A1405V 0.14 benign(0.371) TCGA-BR-8382-01 7 100086950 100086950 A C NYAP1 Missense_Mutation p.S536R 0.27 deleterious(0.01) benign(0.068) TCGA-BR-8382-01 7 100732113 100732113 C - TRIM56 Frame_Shift_Del p.R509Gfs*23 0.13 TCGA-BR-8382-01 7 101926330 101926330 A G SH2B2 5'Flank 0.08 TCGA-BR-8382-01 7 102114856 102114856 G A POLR2J Silent p.A90A 0.13 TCGA-BR-8382-01 7 103130255 103130255 T C RELN Missense_Mutation p.K3233E 0.07 tolerated(0.69) benign(0.071) TCGA-BR-8382-01 7 106797730 106797730 G A PRKAR2B Missense_Mutation p.A362T 0.24 tolerated(0.05) probably_damaging(0.991) TCGA-BR-8382-01 7 107303783 107303783 G A SLC26A4 Silent p.V69V 0.18 TCGA-BR-8382-01 7 107703425 107703425 C T LAMB4 Missense_Mutation p.A1026T 0.16 tolerated(0.62) benign(0.011) TCGA-BR-8382-01 7 107706317 107706317 C T LAMB4 Missense_Mutation p.R909H 0.16 tolerated(0.27) benign(0.06) TCGA-BR-8382-01 7 110763995 110763995 G A LRRN3 Missense_Mutation p.M389I 0.15 tolerated(0.58) probably_damaging(0.991) TCGA-BR-8382-01 7 112462157 112462157 G A C7orf60 Missense_Mutation p.A287V 0.23 deleterious(0.04) possibly_damaging(0.745) TCGA-BR-8382-01 7 113519374 113519374 C T PPP1R3A Nonsense_Mutation p.W591* 0.11 TCGA-BR-8382-01 7 116399408 116399409 CT - MET Frame_Shift_Del p.L762Qfs*27 0.25 TCGA-BR-8382-01 7 11675888 11675888 G A THSD7A Silent p.R297R 0.11 TCGA-BR-8382-01 7 117424457 117424458 - G CTTNBP2 Frame_Shift_Ins p.L707Pfs*25 0.15 TCGA-BR-8382-01 7 126544078 126544078 C A GRM8 Missense_Mutation p.E322D 0.19 deleterious(0.02) benign(0.038) TCGA-BR-8382-01 7 128359092 128359092 C G FAM71F1 Missense_Mutation p.H214Q 0.14 deleterious(0) probably_damaging(0.998) TCGA-BR-8382-01 7 128370103 128370103 C A FAM71F1 Missense_Mutation p.P334Q 0.11 deleterious_low_confidence(0.02) probably_damaging(0.921) TCGA-BR-8382-01 7 129317486 129317486 C T NRF1 Missense_Mutation p.T118M 0.14 tolerated(0.06) possibly_damaging(0.451) TCGA-BR-8382-01 7 130007804 130007805 - T CPA5 Frame_Shift_Ins p.G368Wfs*20 0.27 TCGA-BR-8382-01 7 136700458 136700458 C T CHRM2 Silent p.S282S 0.18 TCGA-BR-8382-01 7 138444498 138444498 G A ATP6V0A4 Missense_Mutation p.T213M 0.14 deleterious(0) probably_damaging(0.973) TCGA-BR-8382-01 7 138603675 138603675 G A KIAA1549 Missense_Mutation p.R233W 0.18 deleterious(0.03) benign(0.001) TCGA-BR-8382-01 7 140301723 140301723 C T DENND2A Missense_Mutation p.V159M 0.19 deleterious(0) probably_damaging(0.999) TCGA-BR-8382-01 7 141673001 141673001 A - TAS2R38 Frame_Shift_Del p.F163Lfs*14 0.15 TCGA-BR-8382-01 7 143096874 143096874 C T EPHA1 Silent p.A235A 0.21 TCGA-BR-8382-01 7 143175406 143175407 - T TAS2R41 Frame_Shift_Ins p.W150Lfs*13 0.18 TCGA-BR-8382-01 7 143956190 143956190 A - OR2A7 Frame_Shift_Del p.C178Vfs*37 0.14 TCGA-BR-8382-01 7 147675027 147675027 C T CNTNAP2 Missense_Mutation p.R777C 0.13 deleterious(0) probably_damaging(0.989) TCGA-BR-8382-01 7 148454198 148454198 C T CUL1 Missense_Mutation p.R147C 0.21 deleterious(0.01) benign(0.426) TCGA-BR-8382-01 7 148464766 148464767 - A CUL1 Frame_Shift_Ins p.L339Tfs*8 0.11 TCGA-BR-8382-01 7 150558259 150558259 C - AOC1 Frame_Shift_Del p.P741Lfs*54 0.10 TCGA-BR-8382-01 7 151960144 151960144 T C KMT2C Missense_Mutation p.Q419R 0.13 possibly_damaging(0.744) TCGA-BR-8382-01 7 20449534 20449534 G A ITGB8 Missense_Mutation p.V742I 0.13 tolerated(0.14) benign(0.23) TCGA-BR-8382-01 7 36910077 36910077 G A ELMO1 Missense_Mutation p.P609L 0.14 deleterious(0) benign(0.213) TCGA-BR-8382-01 7 37136283 37136283 C T ELMO1 Missense_Mutation p.G414D 0.08 deleterious(0) probably_damaging(0.988) TCGA-BR-8382-01 7 4051851 4051851 C T SDK1 Missense_Mutation p.R802C 0.17 deleterious(0.01) possibly_damaging(0.846) TCGA-BR-8382-01 7 40900113 40900113 C T SUGCT 3'UTR 0.23 TCGA-BR-8382-01 7 42005555 42005555 G A GLI3 Missense_Mutation p.A1039V 0.11 tolerated(0.34) benign(0.001) TCGA-BR-8382-01 7 4285315 4285315 C T SDK1 Missense_Mutation p.P2087S 0.12 deleterious(0.01) possibly_damaging(0.854) TCGA-BR-8382-01 7 42957428 42957428 A G PSMA2 Silent p.N179N 0.24 TCGA-BR-8382-01 7 45699644 45699644 G T ADCY1 Missense_Mutation p.K437N 0.17 deleterious(0.01) possibly_damaging(0.772) TCGA-BR-8382-01 7 50468038 50468038 G A IKZF1 Missense_Mutation p.G383R 0.08 deleterious(0.04) probably_damaging(0.988) TCGA-BR-8382-01 7 5413696 5413696 G T TNRC18 Silent p.A1073A 0.10 TCGA-BR-8382-01 7 5427330 5427330 G A TNRC18 Missense_Mutation p.R709C 0.05 probably_damaging(0.988) TCGA-BR-8382-01 7 57522203 57522203 C T ZNF716 Missense_Mutation p.S26F 0.26 deleterious(0) probably_damaging(0.998) TCGA-BR-8382-01 7 65842408 65842408 C T LINC00174 RNA 0.40 TCGA-BR-8382-01 7 70853304 70853304 T C WBSCR17 Missense_Mutation p.L169P 0.20 deleterious(0.03) possibly_damaging(0.9) TCGA-BR-8382-01 7 72416706 72416706 C T POM121 Intron 0.10 TCGA-BR-8382-01 7 72892375 72892375 A T BAZ1B Silent p.P472P 0.12 TCGA-BR-8382-01 7 73183661 73183661 T C CLDN3 3'UTR 0.14 TCGA-BR-8382-01 7 73462021 73462021 C A ELN Silent p.P220P 0.17 TCGA-BR-8382-01 7 74129222 74129222 C T GTF2I Missense_Mutation p.S270L 0.12 tolerated(0.4) benign(0.028) TCGA-BR-8382-01 7 75203108 75203108 G A HIP1 Missense_Mutation p.L235F 0.13 deleterious(0) probably_damaging(1) TCGA-BR-8382-01 7 87145866 87145866 T - ABCB1 Frame_Shift_Del p.T1015Pfs*3 0.11 TCGA-BR-8382-01 7 92855767 92855767 G T HEPACAM2 5'UTR 0.14 TCGA-BR-8382-01 7 93113314 93113314 C T CALCR Intron 0.24 TCGA-BR-8382-01 7 95606891 95606892 - A DYNC1I1 Frame_Shift_Ins p.Q206Tfs*30 0.20 TCGA-BR-8382-01 7 97822238 97822238 G A LMTK2 Missense_Mutation p.E821K 0.21 tolerated(0.69) benign(0.002) TCGA-BR-8382-01 7 98559064 98559064 T C TRRAP Missense_Mutation p.S2217P 0.16 possibly_damaging(0.899) TCGA-BR-8382-01 8 100148975 100148975 G A VPS13B Missense_Mutation p.G549D 0.12 tolerated(0.23) benign(0.025) TCGA-BR-8382-01 8 102731539 102731539 T C NCALD Missense_Mutation p.M107V 0.16 deleterious(0) benign(0.135) TCGA-BR-8382-01 8 103289349 103289349 T - UBR5 Frame_Shift_Del p.E2121Kfs*28 0.24 TCGA-BR-8382-01 8 103564043 103564043 G A ODF1 Missense_Mutation p.E30K 0.15 deleterious_low_confidence(0.05) possibly_damaging(0.905) TCGA-BR-8382-01 8 105235928 105235928 C A RIMS2 Intron 0.22 TCGA-BR-8382-01 8 105601048 105601048 G A LRP12 Silent p.Y26Y 0.11 TCGA-BR-8382-01 8 10584161 10584161 G A SOX7 Missense_Mutation p.A137V 0.15 deleterious(0) probably_damaging(0.984) TCGA-BR-8382-01 8 109796921 109796921 G T TMEM74 Missense_Mutation p.P136H 0.13 tolerated(0.07) possibly_damaging(0.519) TCGA-BR-8382-01 8 110439310 110439310 A G PKHD1L1 Silent p.T975T 0.22 TCGA-BR-8382-01 8 110477120 110477120 A C PKHD1L1 Silent p.R2687R 0.20 TCGA-BR-8382-01 8 114449123 114449123 G A CSMD3 5'UTR 0.09 TCGA-BR-8382-01 8 11696164 11696164 T - FDFT1 3'UTR 0.21 TCGA-BR-8382-01 8 118830694 118830694 C T EXT1 Missense_Mutation p.V538I 0.16 tolerated(0.23) benign(0.396) TCGA-BR-8382-01 8 125464402 125464402 G A TRMT12 Missense_Mutation p.G412R 0.14 tolerated(0.07) possibly_damaging(0.878) TCGA-BR-8382-01 8 128429156 128429156 G A POU5F1B Missense_Mutation p.V349I 0.32 tolerated(0.2) benign(0.026) TCGA-BR-8382-01 8 130764944 130764944 C T GSDMC Missense_Mutation p.E282K 0.13 tolerated(0.84) benign(0.129) TCGA-BR-8382-01 8 131072825 131072825 C T ASAP1 Silent p.T1064T 0.13 TCGA-BR-8382-01 8 134472060 134472060 C T ST3GAL1 Missense_Mutation p.V324M 0.12 probably_damaging(0.97) TCGA-BR-8382-01 8 134472082 134472082 G A ST3GAL1 Silent p.H316H 0.11 TCGA-BR-8382-01 8 136657326 136657326 A G KHDRBS3 Silent p.G305G 0.07 TCGA-BR-8382-01 8 139164495 139164495 G A FAM135B Silent p.S741S 0.10 TCGA-BR-8382-01 8 142228396 142228396 A G SLC45A4 Missense_Mutation p.L397P 0.14 tolerated(0.2) benign(0.268) TCGA-BR-8382-01 8 143412317 143412317 G A TSNARE1 Missense_Mutation p.R280W 0.12 deleterious(0) possibly_damaging(0.8) TCGA-BR-8382-01 8 144732141 144732141 G A ZNF623 Silent p.T33T 0.16 TCGA-BR-8382-01 8 144940477 144940477 G T EPPK1 Silent p.T2315T 0.05 TCGA-BR-8382-01 8 144942153 144942153 G A EPPK1 Silent p.L1757L 0.15 TCGA-BR-8382-01 8 144993942 144993942 C T PLEC Silent p.T3486T 0.13 TCGA-BR-8382-01 8 144994298 144994298 G A PLEC Missense_Mutation p.R3368C 0.14 probably_damaging(0.96) TCGA-BR-8382-01 8 145582930 145582930 T C SLC52A2 5'UTR 0.10 TCGA-BR-8382-01 8 145637935 145637935 T C SLC39A4 Missense_Mutation p.D644G 0.14 tolerated(0.05) benign(0.164) TCGA-BR-8382-01 8 145763109 145763109 C T ARHGAP39 Silent p.P870P 0.14 TCGA-BR-8382-01 8 15480617 15480617 T C TUSC3 Missense_Mutation p.L56P 0.20 deleterious(0) probably_damaging(0.966) TCGA-BR-8382-01 8 15998383 15998383 G T MSR1 Intron 0.07 TCGA-BR-8382-01 8 17401103 17401103 C T SLC7A2 Silent p.C125C 0.15 TCGA-BR-8382-01 8 21827021 21827021 A G XPO7 Missense_Mutation p.T65A 0.11 deleterious(0.01) benign(0.14) TCGA-BR-8382-01 8 21905676 21905676 C T FGF17 Silent p.A189A 0.13 TCGA-BR-8382-01 8 21965188 21965188 C T NUDT18 Missense_Mutation p.A199T 0.16 tolerated(0.35) benign(0.027) TCGA-BR-8382-01 8 22273425 22273425 G A SLC39A14 Silent p.A298A 0.12 TCGA-BR-8382-01 8 26721669 26721669 G A ADRA1A Missense_Mutation p.T273M 0.14 deleterious(0.02) probably_damaging(0.994) TCGA-BR-8382-01 8 32621514 32621514 C T NRG1 Missense_Mutation p.A511V 0.15 tolerated(0.25) benign(0.012) TCGA-BR-8382-01 8 35647984 35647984 T G UNC5D Missense_Mutation p.L922R 0.19 deleterious(0) probably_damaging(1) TCGA-BR-8382-01 8 37701961 37701961 G A BRF2 3'UTR 0.25 TCGA-BR-8382-01 8 42565570 42565570 T C CHRNB3 Missense_Mutation p.L81P 0.12 deleterious(0) probably_damaging(1) TCGA-BR-8382-01 8 48772214 48772214 G T PRKDC Missense_Mutation p.S2054R 0.11 possibly_damaging(0.747) TCGA-BR-8382-01 8 54791937 54791937 C T RGS20 Silent p.P95P 0.22 TCGA-BR-8382-01 8 66619471 66619471 A G MTFR1 Silent p.V248V 0.15 TCGA-BR-8382-01 8 67039509 67039509 C T TRIM55 Silent p.S2S 0.12 TCGA-BR-8382-01 8 68105705 68105705 A G CSPP1 Missense_Mutation p.S1108G 0.18 tolerated(0.27) benign(0.006) TCGA-BR-8382-01 8 68864748 68864748 G A PREX2 Missense_Mutation p.G40D 0.15 tolerated(0.12) possibly_damaging(0.855) TCGA-BR-8382-01 8 68972999 68972999 G A PREX2 Missense_Mutation p.G442R 0.31 deleterious(0.01) probably_damaging(1) TCGA-BR-8382-01 8 70533371 70533371 C T SULF1 Silent p.Y493Y 0.16 TCGA-BR-8382-01 8 71036947 71036947 G A NCOA2 Missense_Mutation p.A1357V 0.11 deleterious(0) benign(0.222) TCGA-BR-8382-01 8 77775599 77775599 A - ZFHX4 Frame_Shift_Del p.E3219Rfs*15 0.11 TCGA-BR-8382-01 8 9564436 9564436 C T TNKS Missense_Mutation p.T462I 0.11 deleterious(0.03) probably_damaging(0.998) TCGA-BR-8382-01 8 95690487 95690487 G A ESRP1 Missense_Mutation p.A570T 0.10 tolerated(0.16) benign(0.303) TCGA-BR-8382-01 8 96166659 96166659 T G PLEKHF2 Missense_Mutation p.C129W 0.21 deleterious(0) probably_damaging(1) TCGA-BR-8382-01 8 97157634 97157634 C T GDF6 Silent p.A175A 0.25 TCGA-BR-8382-01 8 98289667 98289667 G T TSPYL5 Missense_Mutation p.P136T 0.17 tolerated(0.62) benign(0.194) TCGA-BR-8382-01 9 101602364 101602364 T G GALNT12 Silent p.T431T 0.15 TCGA-BR-8382-01 9 101810227 101810227 G A COL15A1 Missense_Mutation p.R913H 0.25 deleterious(0) probably_damaging(0.995) TCGA-BR-8382-01 9 104357179 104357179 C T PPP3R2 Missense_Mutation p.A12T 0.15 tolerated(0.56) benign(0.005) TCGA-BR-8382-01 9 111617074 111617074 G A ACTL7B Silent p.S379S 0.18 TCGA-BR-8382-01 9 111656285 111656285 C A IKBKAP Missense_Mutation p.R933L 0.14 deleterious(0.02) possibly_damaging(0.827) TCGA-BR-8382-01 9 111705293 111705293 A G CTNNAL1 Missense_Mutation p.M696T 0.17 deleterious(0.03) benign(0.001) TCGA-BR-8382-01 9 111761499 111761499 T - CTNNAL1 Frame_Shift_Del p.K60Sfs*12 0.14 TCGA-BR-8382-01 9 112199206 112199206 G A PTPN3 Missense_Mutation p.A211V 0.13 deleterious(0.03) probably_damaging(0.998) TCGA-BR-8382-01 9 115421571 115421571 T A KIAA1958 Missense_Mutation p.L458H 0.14 deleterious(0) probably_damaging(0.965) TCGA-BR-8382-01 9 117124787 117124787 G A AKNA Silent p.H605H 0.23 TCGA-BR-8382-01 9 117808794 117808794 T C TNC Missense_Mutation p.T1674A 0.22 tolerated(0.08) benign(0.06) TCGA-BR-8382-01 9 119739005 119739005 G A ASTN2 Missense_Mutation p.R500C 0.11 deleterious(0) unknown(0) TCGA-BR-8382-01 9 123292371 123292371 A G CDK5RAP2 Missense_Mutation p.I237T 0.13 deleterious(0) benign(0.152) TCGA-BR-8382-01 9 12708068 12708068 C - TYRP1 Frame_Shift_Del p.P446Qfs*33 0.17 TCGA-BR-8382-01 9 129157978 129157978 T C MVB12B Splice_Site p.X221_splice 0.16 TCGA-BR-8382-01 9 130165962 130165962 G A SLC2A8 Silent p.R249R 0.17 TCGA-BR-8382-01 9 130869723 130869723 A G SLC25A25 Nonstop_Mutation p.*504Wext*38 0.18 TCGA-BR-8382-01 9 131122642 131122642 C T SLC27A4 Missense_Mutation p.R602W 0.18 deleterious(0) probably_damaging(0.972) TCGA-BR-8382-01 9 131454979 131454979 C T SET Missense_Mutation p.H118Y 0.15 deleterious(0.04) probably_damaging(0.934) TCGA-BR-8382-01 9 133914404 133914404 G A LAMC3 Missense_Mutation p.R377Q 0.26 tolerated(1) benign(0.007) TCGA-BR-8382-01 9 134366905 134366905 G - PRRC2B Frame_Shift_Del p.A2108Pfs*15 0.31 TCGA-BR-8382-01 9 135271838 135271838 A G TTF1 Missense_Mutation p.V613A 0.24 tolerated(0.17) benign(0.017) TCGA-BR-8382-01 9 135493777 135493777 G A DDX31 Nonsense_Mutation p.Q694* 0.13 TCGA-BR-8382-01 9 139903448 139903448 G A ABCA2 Silent p.D2295D 0.20 TCGA-BR-8382-01 9 140087050 140087050 C G TPRN Missense_Mutation p.E607Q 0.29 deleterious(0.05) benign(0.366) TCGA-BR-8382-01 9 140669655 140669655 G A EHMT1 Missense_Mutation p.R581H 0.15 tolerated(0.1) possibly_damaging(0.875) TCGA-BR-8382-01 9 16419583 16419583 C A BNC2 Missense_Mutation p.D902Y 0.14 deleterious(0.01) probably_damaging(0.995) TCGA-BR-8382-01 9 19446317 19446317 C T ACER2 Missense_Mutation p.S181L 0.17 deleterious(0.04) benign(0.426) TCGA-BR-8382-01 9 33113450 33113450 C T B4GALT1 3'UTR 0.22 TCGA-BR-8382-01 9 33799074 33799074 G T PRSS3 Missense_Mutation p.V271F 0.14 deleterious(0) probably_damaging(1) TCGA-BR-8382-01 9 34371332 34371332 G A KIAA1161 Missense_Mutation p.A503V 0.20 deleterious(0) possibly_damaging(0.535) TCGA-BR-8382-01 9 35079503 35079503 A C FANCG Missense_Mutation p.S7A 0.20 tolerated_low_confidence(1) benign(0) TCGA-BR-8382-01 9 35869820 35869820 C T OR13J1 Silent p.S193S 0.14 TCGA-BR-8382-01 9 36112460 36112461 - A RECK Frame_Shift_Ins p.N685Kfs*16 0.24 TCGA-BR-8382-01 9 39171366 39171366 C A CNTNAP3 Missense_Mutation p.G445C 0.20 deleterious(0) probably_damaging(1) TCGA-BR-8382-01 9 70993145 70993145 A G PGM5 Missense_Mutation p.I98V 0.09 deleterious(0.01) possibly_damaging(0.573) TCGA-BR-8382-01 9 75545879 75545879 C T ALDH1A1 Silent p.P76P 0.13 TCGA-BR-8382-01 9 78686670 78686670 G T PCSK5 Silent p.T250T 0.16 TCGA-BR-8382-01 9 84530387 84530387 C A SPATA31D5P RNA 0.18 TCGA-BR-8382-01 9 86292653 86292653 G T UBQLN1 Missense_Mutation p.P365H 0.12 deleterious(0) possibly_damaging(0.751) TCGA-BR-8382-01 9 91616794 91616794 C T S1PR3 Missense_Mutation p.R227C 0.22 deleterious(0.01) benign(0.262) TCGA-BR-8382-01 9 95043054 95043054 G A IARS Missense_Mutation p.P240L 0.18 deleterious(0) probably_damaging(0.992) TCGA-BR-8382-01 9 95768325 95768325 G A FGD3 Missense_Mutation p.G234R 0.20 deleterious(0) probably_damaging(0.999) TCGA-BR-8382-01 9 99580198 99580198 C T ZNF782 3'UTR 0.22 TCGA-BR-8382-01 X 100183284 100183284 C G XKRX Missense_Mutation p.V4L 0.14 deleterious_low_confidence(0.03) benign(0.054) TCGA-BR-8382-01 X 100538467 100538467 T - TAF7L Frame_Shift_Del p.T170Pfs*35 0.18 TCGA-BR-8382-01 X 104984565 104984565 A C IL1RAPL2 Missense_Mutation p.K310T 0.16 tolerated(0.35) possibly_damaging(0.881) TCGA-BR-8382-01 X 106243199 106243199 T - MORC4 Frame_Shift_Del p.M1? 0.19 TCGA-BR-8382-01 X 107976159 107976159 G A IRS4 Missense_Mutation p.A1139V 0.22 tolerated_low_confidence(0.25) unknown(0) TCGA-BR-8382-01 X 118223525 118223525 G A KIAA1210 Silent p.S556S 0.14 TCGA-BR-8382-01 X 119053878 119053878 C T AKAP14 Missense_Mutation p.A149V 0.15 tolerated(0.45) possibly_damaging(0.776) TCGA-BR-8382-01 X 119293200 119293200 G A RHOXF2 Missense_Mutation p.R120H 0.26 tolerated(0.12) benign(0.266) TCGA-BR-8382-01 X 120009498 120009499 - G CT47B1 Frame_Shift_Ins p.T10Dfs*23 0.15 TCGA-BR-8382-01 X 123556188 123556188 A G TENM1 Missense_Mutation p.Y1469H 0.22 tolerated(0.12) benign(0.001) TCGA-BR-8382-01 X 12738674 12738674 A T FRMPD4 3'UTR 0.22 TCGA-BR-8382-01 X 12906073 12906073 G T TLR7 Missense_Mutation p.G816W 0.12 deleterious(0) probably_damaging(0.971) TCGA-BR-8382-01 X 129318790 129318790 T C RAB33A 3'UTR 0.28 TCGA-BR-8382-01 X 131524939 131524939 G A MBNL3 Missense_Mutation p.A236V 0.15 deleterious(0.03) benign(0.138) TCGA-BR-8382-01 X 131540407 131540407 C T MBNL3 Missense_Mutation p.R64Q 0.23 deleterious(0) probably_damaging(0.999) TCGA-BR-8382-01 X 13791023 13791024 - T GPM6B Frame_Shift_Ins p.E322Rfs*58 0.19 TCGA-BR-8382-01 X 149919511 149919511 G A MTMR1 Intron 0.28 TCGA-BR-8382-01 X 152818528 152818528 G A ATP2B3 Missense_Mutation p.R620Q 0.06 tolerated(0.26) benign(0.313) TCGA-BR-8382-01 X 15288001 15288002 CT - ASB9 5'UTR 0.22 TCGA-BR-8382-01 X 15306058 15306058 C T ASB11 Silent p.A264A 0.14 TCGA-BR-8382-01 X 153281967 153281967 C - IRAK1 Frame_Shift_Del p.G386Afs*28 0.16 TCGA-BR-8382-01 X 153995316 153995316 G - DKC1 Frame_Shift_Del p.T167Pfs*7 0.20 TCGA-BR-8382-01 X 154091411 154091411 T C F8 Missense_Mutation p.H2174R 0.23 deleterious(0.03) probably_damaging(0.929) TCGA-BR-8382-01 X 15845295 15845295 A - AP1S2 3'UTR 0.42 TCGA-BR-8382-01 X 18198717 18198717 C T BEND2 Missense_Mutation p.V448I 0.19 tolerated(0.46) benign(0.005) TCGA-BR-8382-01 X 18274983 18274983 C G SCML2 Missense_Mutation p.D481H 0.16 deleterious(0) possibly_damaging(0.764) TCGA-BR-8382-01 X 2139163 2139163 G A DHRSX Silent p.H304H 0.17 TCGA-BR-8382-01 X 22056424 22056424 C T PHEX Intron 0.18 TCGA-BR-8382-01 X 23353224 23353224 C T PTCHD1 Missense_Mutation p.R78C 0.20 deleterious(0.03) probably_damaging(0.91) TCGA-BR-8382-01 X 31090101 31090101 G A FTHL17 5'UTR 0.13 TCGA-BR-8382-01 X 3235238 3235238 C A MXRA5 Nonsense_Mutation p.G2162* 0.22 TCGA-BR-8382-01 X 36007458 36007458 A C CXorf22 Silent p.S912S 0.14 TCGA-BR-8382-01 X 36122660 36122661 - C CHDC2 Frame_Shift_Ins p.I302Hfs*21 0.16 TCGA-BR-8382-01 X 41586415 41586415 A - GPR82 Frame_Shift_Del p.T48Hfs*11 0.11 TCGA-BR-8382-01 X 47836703 47836703 A G ZNF182 Silent p.P261P 0.21 TCGA-BR-8382-01 X 47837005 47837005 C T ZNF182 Missense_Mutation p.E161K 0.30 tolerated(0.22) benign(0.048) TCGA-BR-8382-01 X 49958568 49958568 G C AKAP4 Missense_Mutation p.P266A 0.12 tolerated(0.93) benign(0.001) TCGA-BR-8382-01 X 53966872 53966872 T A PHF8 Missense_Mutation p.Q945H 0.15 tolerated(0.17) benign(0.339) TCGA-BR-8382-01 X 54585017 54585017 C T GNL3L Missense_Mutation p.T532M 0.09 tolerated(0.12) benign(0.068) TCGA-BR-8382-01 X 55026949 55026949 G A APEX2 Missense_Mutation p.V32M 0.10 tolerated(0.33) benign(0.017) TCGA-BR-8382-01 X 57318993 57318993 C A FAAH2 Silent p.I85I 0.18 TCGA-BR-8382-01 X 62570006 62570006 G T SPIN4 Missense_Mutation p.F231L 0.18 tolerated(0.11) probably_damaging(0.978) TCGA-BR-8382-01 X 62885799 62885801 GAA - ARHGEF9 In_Frame_Del p.F341del 0.24 TCGA-BR-8382-01 X 63412648 63412648 A - AMER1 Frame_Shift_Del p.F173Lfs*36 0.15 TCGA-BR-8382-01 X 65423338 65423338 T C HEPH Missense_Mutation p.I791T 0.07 deleterious(0) benign(0.056) TCGA-BR-8382-01 X 70356310 70356310 C T MED12 Silent p.R1735R 0.17 TCGA-BR-8382-01 X 70367958 70367958 C T NLGN3 Missense_Mutation p.P120L 0.17 deleterious(0) probably_damaging(1) TCGA-BR-8382-01 X 70469111 70469111 A - ZMYM3 Intron 0.12 TCGA-BR-8382-01 X 71351472 71351472 C T RGAG4 5'UTR 0.17 TCGA-BR-8382-01 X 78010799 78010799 C T LPAR4 Nonsense_Mutation p.R145* 0.19 TCGA-BR-8382-01 X 83128372 83128372 A C CYLC1 Missense_Mutation p.N219T 0.19 deleterious(0.03) possibly_damaging(0.607) TCGA-BR-8382-01 X 85404095 85404095 C T DACH2 Silent p.T157T 0.15 TCGA-BR-8382-01 X 89177210 89177210 A C TGIF2LX Missense_Mutation p.R42S 0.19 deleterious(0.01) benign(0.007) TCGA-BR-8382-01 X 99943432 99943432 T C SYTL4 Silent p.E307E 0.22 TCGA-BR-8384-01 10 102305759 102305759 C T HIF1AN Silent p.Y261Y 0.08 TCGA-BR-8384-01 10 55582245 55582245 A G PCDH15 Silent p.L1749L 0.14 TCGA-BR-8384-01 11 123848029 123848029 T C OR10S1 Missense_Mutation p.T124A 0.06 tolerated(0.13) benign(0.016) TCGA-BR-8384-01 11 55798495 55798495 G T OR5AS1 Missense_Mutation p.A201S 0.06 tolerated(0.12) benign(0.065) TCGA-BR-8384-01 12 133435715 133435715 C G CHFR Missense_Mutation p.D296H 0.11 deleterious(0) probably_damaging(0.98) TCGA-BR-8384-01 13 32911853 32911853 T A BRCA2 Missense_Mutation p.S1121T 0.08 tolerated(0.27) probably_damaging(0.996) TCGA-BR-8384-01 13 32911967 32911967 T A BRCA2 Missense_Mutation p.C1159S 0.06 tolerated(0.22) benign(0.003) TCGA-BR-8384-01 15 22956482 22956482 A G CYFIP1 Silent p.K573K 0.05 TCGA-BR-8384-01 15 28228574 28228574 A C OCA2 Missense_Mutation p.F474V 0.07 deleterious(0) probably_damaging(1) TCGA-BR-8384-01 15 34517759 34517759 G T EMC4 Missense_Mutation p.G37C 0.05 deleterious(0.04) benign(0.149) TCGA-BR-8384-01 16 48149471 48149471 C T ABCC12 Missense_Mutation p.R615H 0.07 deleterious(0.02) probably_damaging(0.972) TCGA-BR-8384-01 16 61687741 61687741 A C CDH8 Missense_Mutation p.F724C 0.06 deleterious(0) probably_damaging(0.997) TCGA-BR-8384-01 17 10368833 10368833 C T MYH4 Missense_Mutation p.R144Q 0.09 deleterious(0.03) probably_damaging(0.937) TCGA-BR-8384-01 17 17726908 17726908 C G SREBF1 Silent p.A35A 0.14 TCGA-BR-8384-01 17 39412077 39412077 C G KRTAP9-9 Missense_Mutation p.T147S 0.09 tolerated(0.93) possibly_damaging(0.631) TCGA-BR-8384-01 17 65740060 65740060 T G NOL11 3'UTR 0.13 TCGA-BR-8384-01 18 644941 644941 C T CLUL1 Missense_Mutation p.S414F 0.10 deleterious(0.02) benign(0.085) TCGA-BR-8384-01 19 22940942 22940942 T C ZNF99 Missense_Mutation p.E590G 0.12 deleterious(0.01) probably_damaging(0.929) TCGA-BR-8384-01 19 29698482 29698482 G A UQCRFS1 Silent p.T266T 0.06 TCGA-BR-8384-01 19 43575896 43575896 G C PSG2 Missense_Mutation p.A307G 0.08 tolerated(0.22) probably_damaging(0.96) TCGA-BR-8384-01 19 54140031 54140031 C T DPRX Missense_Mutation p.T122M 0.07 tolerated(0.1) benign(0.13) TCGA-BR-8384-01 19 58697083 58697083 C G ZNF274 Missense_Mutation p.P13R 0.05 deleterious(0) probably_damaging(0.995) TCGA-BR-8384-01 19 9091701 9091701 G T MUC16 Silent p.T38T 0.06 TCGA-BR-8384-01 19 9091702 9091702 G T MUC16 Missense_Mutation p.T38N 0.06 unknown(0) TCGA-BR-8384-01 1 176838101 176838101 C T ASTN1 Missense_Mutation p.A1176T 0.06 deleterious(0) probably_damaging(0.997) TCGA-BR-8384-01 1 232551275 232551275 C A SIPA1L2 Missense_Mutation p.W1576L 0.08 deleterious(0) probably_damaging(0.999) TCGA-BR-8384-01 1 240975337 240975337 T G RGS7 Missense_Mutation p.E321D 0.07 tolerated(0.41) benign(0.032) TCGA-BR-8384-01 1 248308867 248308867 A G OR2M5 Missense_Mutation p.I140V 0.07 tolerated(1) benign(0.007) TCGA-BR-8384-01 1 32167825 32167825 G A COL16A1 5'UTR 0.16 TCGA-BR-8384-01 1 6209393 6209393 G A CHD5 Silent p.C358C 0.11 TCGA-BR-8384-01 20 1277044 1277044 G C SNPH Missense_Mutation p.R10P 0.06 deleterious_low_confidence(0.01) probably_damaging(0.991) TCGA-BR-8384-01 20 23967072 23967072 C T GGTLC1 Splice_Site p.X59_splice 0.12 TCGA-BR-8384-01 21 32119459 32119459 G A KRTAP21-2 Missense_Mutation p.S21F 0.07 tolerated_low_confidence(0.39) unknown(0) TCGA-BR-8384-01 22 24199212 24199212 C T SLC2A11 Intron 0.17 TCGA-BR-8384-01 2 1677547 1677547 A C PXDN Missense_Mutation p.L296V 0.10 tolerated(0.26) benign(0.259) TCGA-BR-8384-01 2 177036736 177036736 G A HOXD3 Missense_Mutation p.G345S 0.10 tolerated(0.32) probably_damaging(0.937) TCGA-BR-8384-01 2 179640792 179640792 T G TTN Missense_Mutation p.E1933D 0.04 TCGA-BR-8384-01 2 220432469 220432469 G A OBSL1 Missense_Mutation p.S502F 0.06 deleterious(0) probably_damaging(0.99) TCGA-BR-8384-01 2 96040939 96040939 G A KCNIP3 Missense_Mutation p.G144R 0.09 deleterious(0) probably_damaging(1) TCGA-BR-8384-01 3 139346557 139346557 G A NMNAT3 5'UTR 0.08 TCGA-BR-8384-01 3 154010343 154010343 C T DHX36 Missense_Mutation p.G604E 0.07 deleterious(0) probably_damaging(0.998) TCGA-BR-8384-01 3 172055153 172055153 T G FNDC3B Missense_Mutation p.L605R 0.08 tolerated(0.05) benign(0.04) TCGA-BR-8384-01 3 52236731 52236731 A G ALAS1 Silent p.E136E 0.07 TCGA-BR-8384-01 3 98188977 98188977 G A OR5K1 Missense_Mutation p.R186K 0.09 tolerated(0.89) probably_damaging(0.995) TCGA-BR-8384-01 4 1978261 1978261 G A WHSC1 Silent p.R1227R 0.12 TCGA-BR-8384-01 6 117113951 117113951 G A GPRC6A Missense_Mutation p.T712M 0.05 tolerated(0.11) possibly_damaging(0.903) TCGA-BR-8384-01 6 150001244 150001244 C G LATS1 Missense_Mutation p.G787A 0.10 deleterious(0) probably_damaging(1) TCGA-BR-8384-01 7 136701002 136701002 G A CHRM2 Missense_Mutation p.A464T 0.09 tolerated_low_confidence(1) benign(0.002) TCGA-BR-8384-01 7 150775664 150775664 C T FASTK Silent p.T270T 0.05 TCGA-BR-8384-01 8 100887987 100887987 A C VPS13B 3'UTR 0.12 TCGA-BR-8384-01 8 10467031 10467031 G A RP1L1 Missense_Mutation p.T1526M 0.06 unknown(0) TCGA-BR-8384-01 8 113960100 113960100 T A CSMD3 Missense_Mutation p.E476V 0.13 deleterious(0) possibly_damaging(0.811) TCGA-BR-8384-01 8 125047566 125047566 G A FER1L6 Missense_Mutation p.V779M 0.04 tolerated(0.1) benign(0.439) TCGA-BR-8384-01 8 135669925 135669925 C T ZFAT Silent p.S25S 0.06 TCGA-BR-8384-01 8 18725257 18725257 C T PSD3 Missense_Mutation p.V521I 0.08 tolerated(1) benign(0.001) TCGA-BR-8384-01 8 32613972 32613972 A C NRG1 Missense_Mutation p.E290D 0.04 tolerated(0.2) possibly_damaging(0.647) TCGA-BR-8384-01 9 132397678 132397678 G A NTMT1 Missense_Mutation p.A203T 0.04 tolerated(0.44) benign(0.017) TCGA-BR-8384-01 9 139368957 139368957 A C SEC16A Silent p.L1037L 0.12 TCGA-BR-8384-01 X 105178264 105178264 A G NRK Silent p.G1110G 0.14 TCGA-BR-8384-01 X 125299770 125299770 C T DCAF12L2 Silent p.A46A 0.11 TCGA-BR-8384-01 X 140995303 140995303 C A MAGEC1 Missense_Mutation p.L705M 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.665) TCGA-BR-8384-01 X 91134131 91134131 A C PCDH11X Missense_Mutation p.Q964H 0.15 deleterious(0) probably_damaging(1) TCGA-BR-8483-01 10 18292192 18292192 T C SLC39A12 Missense_Mutation p.Y618H 0.19 deleterious(0) probably_damaging(0.997) TCGA-BR-8483-01 10 28225654 28225654 C G ARMC4 Splice_Site p.X751_splice 0.20 TCGA-BR-8483-01 10 87406860 87406860 G T GRID1 Intron 0.30 TCGA-BR-8483-01 11 103908798 103908798 A C DDI1 3'UTR 0.45 TCGA-BR-8483-01 11 108709278 108709278 A T DDX10 Missense_Mutation p.T691S 0.27 tolerated(0.48) possibly_damaging(0.577) TCGA-BR-8483-01 11 123894262 123894262 G A OR10G9 Silent p.P181P 0.26 TCGA-BR-8483-01 11 126174022 126174022 A C DCPS Missense_Mutation p.D16A 0.18 tolerated(0.24) benign(0.006) TCGA-BR-8483-01 11 126174023 126174023 C G DCPS Missense_Mutation p.D16E 0.18 tolerated(0.37) benign(0.011) TCGA-BR-8483-01 11 1268160 1268160 C T MUC5B Silent p.S3350S 0.28 TCGA-BR-8483-01 11 25004701 25004701 T G LUZP2 Silent p.T209T 0.16 TCGA-BR-8483-01 11 47493779 47493779 C T CELF1 3'UTR 0.23 TCGA-BR-8483-01 11 59377920 59377920 G A OSBP Missense_Mutation p.R169W 0.19 deleterious(0) probably_damaging(0.998) TCGA-BR-8483-01 11 78381504 78381504 C T TENM4 Silent p.A1962A 0.16 TCGA-BR-8483-01 11 85445087 85445087 T A SYTL2 Missense_Mutation p.T428S 0.32 tolerated(0.29) benign(0.066) TCGA-BR-8483-01 12 109684073 109684073 T G ACACB Missense_Mutation p.F1797L 0.20 deleterious(0.04) benign(0.127) TCGA-BR-8483-01 12 113303287 113303287 T A RPH3A Missense_Mutation p.L100Q 0.28 deleterious(0) probably_damaging(0.999) TCGA-BR-8483-01 12 116445251 116445251 G T MED13L Missense_Mutation p.Q735K 0.19 tolerated(0.93) unknown(0) TCGA-BR-8483-01 12 2797944 2797944 C T CACNA1C Missense_Mutation p.A2087V 0.36 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-BR-8483-01 12 50598452 50598452 C A LIMA1 Missense_Mutation p.E249D 0.30 tolerated(0.35) benign(0.011) TCGA-BR-8483-01 12 52188352 52188352 T G SCN8A Missense_Mutation p.F1574L 0.13 tolerated(0.23) benign(0.043) TCGA-BR-8483-01 12 7076368 7076368 C T PHB2 Missense_Mutation p.R252H 0.18 deleterious(0) probably_damaging(0.987) TCGA-BR-8483-01 12 78415601 78415601 C T NAV3 Missense_Mutation p.S661L 0.33 tolerated(0.41) benign(0.005) TCGA-BR-8483-01 12 92818809 92818809 G A CLLU1 Missense_Mutation p.R118H 0.14 possibly_damaging(0.711) TCGA-BR-8483-01 13 109617206 109617206 G A MYO16 Silent p.V753V 0.15 TCGA-BR-8483-01 13 20346569 20346569 G A PSPC1 Missense_Mutation p.L163F 0.19 deleterious(0.03) probably_damaging(0.927) TCGA-BR-8483-01 14 105412999 105412999 G A AHNAK2 Missense_Mutation p.A2930V 0.40 benign(0.001) TCGA-BR-8483-01 14 47426671 47426671 G A MDGA2 Silent p.Y665Y 0.25 TCGA-BR-8483-01 14 76165590 76165590 C T TTLL5 Missense_Mutation p.R188W 0.30 deleterious(0) probably_damaging(0.997) TCGA-BR-8483-01 15 50152665 50152665 C T ATP8B4 Missense_Mutation p.R1102Q 0.42 tolerated(0.44) benign(0) TCGA-BR-8483-01 16 2043051 2043051 G A SYNGR3 Missense_Mutation p.G223E 0.23 tolerated(0.08) probably_damaging(0.984) TCGA-BR-8483-01 16 81075923 81075926 GTAG - ATMIN Frame_Shift_Del p.C167Lfs*13 0.20 TCGA-BR-8483-01 17 10209864 10209864 G A MYH13 Missense_Mutation p.T1793M 0.31 deleterious(0.01) benign(0.005) TCGA-BR-8483-01 17 10243522 10243522 C A MYH13 Missense_Mutation p.R667S 0.52 deleterious(0.01) benign(0.269) TCGA-BR-8483-01 17 17697280 17697280 C T RAI1 Missense_Mutation p.P340S 0.34 deleterious(0) probably_damaging(0.999) TCGA-BR-8483-01 17 20224724 20224724 A T AC004702.2 Intron 0.24 TCGA-BR-8483-01 17 35567388 35567388 G A ACACA Silent p.L1234L 0.17 TCGA-BR-8483-01 17 35687325 35687452 17:35687325-35687452 - ACACA large deletion p.X29_splice 0.28 TCGA-BR-8483-01 17 37873803 37873803 T C ERBB2 Intron 0.20 TCGA-BR-8483-01 17 39116589 39116589 G T KRT39 Silent p.S387S 0.47 TCGA-BR-8483-01 17 56399716 56399716 G A BZRAP1 Missense_Mutation p.R459W 0.20 deleterious(0.02) possibly_damaging(0.841) TCGA-BR-8483-01 17 57109355 57109364 AATGGATCAA - TRIM37 Frame_Shift_Del p.I614Kfs*3 0.21 TCGA-BR-8483-01 17 7579311 7579311 C T TP53 Splice_Site p.X125_splice 0.75 TCGA-BR-8483-01 18 21531699 21531699 C G LAMA3 Missense_Mutation p.P3232A 0.26 probably_damaging(0.984) TCGA-BR-8483-01 19 10624548 10624548 G A S1PR5 Silent p.G380G 0.16 TCGA-BR-8483-01 19 3746813 3746813 A T TJP3 Missense_Mutation p.Q763L 0.32 deleterious(0.02) benign(0.013) TCGA-BR-8483-01 19 51021504 51021504 G A LRRC4B Missense_Mutation p.T489M 0.30 deleterious(0) probably_damaging(0.999) TCGA-BR-8483-01 19 58132648 58132648 T C ZNF134 Silent p.L387L 0.18 TCGA-BR-8483-01 19 5844835 5844835 C T FUT3 Missense_Mutation p.A6T 0.34 tolerated(0.59) benign(0.001) TCGA-BR-8483-01 19 9074307 9074307 G T MUC16 Missense_Mutation p.T4380K 0.32 unknown(0) TCGA-BR-8483-01 1 100573401 100573401 T C SASS6 Missense_Mutation p.T341A 0.36 deleterious(0) possibly_damaging(0.748) TCGA-BR-8483-01 1 11907324 11907324 C T NPPA Missense_Mutation p.R99Q 0.47 deleterious(0.04) benign(0.018) TCGA-BR-8483-01 1 155187130 155187130 G A MTX1 3'Flank 0.14 TCGA-BR-8483-01 1 165513566 165513566 G A LRRC52 Nonsense_Mutation p.W11* 0.18 TCGA-BR-8483-01 1 17395663 17395663 A T PADI2 Missense_Mutation p.L625Q 0.42 deleterious(0) probably_damaging(0.974) TCGA-BR-8483-01 1 18149652 18149652 G A ACTL8 Missense_Mutation p.R50H 0.30 tolerated(0.13) possibly_damaging(0.767) TCGA-BR-8483-01 1 182798028 182798028 G T NPL Missense_Mutation p.L316F 0.08 deleterious_low_confidence(0.03) benign(0.001) TCGA-BR-8483-01 1 196963208 196963210 AGA - CFHR5 Splice_Site p.X144_splice 0.29 TCGA-BR-8483-01 1 203017352 203017352 T G PPFIA4 5'Flank 0.59 TCGA-BR-8483-01 1 204131141 204131141 G A REN Silent p.D83D 0.15 TCGA-BR-8483-01 1 205238338 205238338 C T TMCC2 Silent p.F336F 0.32 TCGA-BR-8483-01 1 206619529 206619529 A T SRGAP2 Missense_Mutation p.Q575H 0.23 deleterious(0) probably_damaging(0.993) TCGA-BR-8483-01 1 20827849 20827850 - T MUL1 Frame_Shift_Ins p.H131Qfs*27 0.28 TCGA-BR-8483-01 1 34180299 34180299 G A CSMD2 Silent p.G1058G 0.27 TCGA-BR-8483-01 1 67147694 67147694 C T SGIP1 Silent p.S319S 0.41 TCGA-BR-8483-01 1 67148039 67148039 G A SGIP1 Silent p.P434P 0.40 TCGA-BR-8483-01 1 92811435 92811435 C T RPAP2 Missense_Mutation p.A551V 0.29 tolerated(0.26) benign(0.006) TCGA-BR-8483-01 20 1281207 1281207 C T SNPH Missense_Mutation p.R54C 0.16 deleterious(0) probably_damaging(0.997) TCGA-BR-8483-01 20 1961277 1961277 C T PDYN Missense_Mutation p.D153N 0.11 tolerated(0.17) benign(0.006) TCGA-BR-8483-01 20 30556111 30556111 G A XKR7 Missense_Mutation p.A45T 0.19 tolerated(0.58) unknown(0) TCGA-BR-8483-01 20 32661668 32661668 G A RALY Missense_Mutation p.D125N 0.16 tolerated(0.12) benign(0.002) TCGA-BR-8483-01 20 34766563 34766563 C T EPB41L1 Silent p.D153D 0.10 TCGA-BR-8483-01 20 40944604 40944604 A C PTPRT Missense_Mutation p.L633R 0.14 tolerated(0.31) benign(0.016) TCGA-BR-8483-01 20 419300 419300 G A TBC1D20 Missense_Mutation p.A381V 0.14 tolerated(0.23) possibly_damaging(0.536) TCGA-BR-8483-01 20 42966005 42966005 C A R3HDML Missense_Mutation p.H70N 0.11 deleterious(0) probably_damaging(0.999) TCGA-BR-8483-01 20 43752461 43752461 C G WFDC12 3'UTR 0.23 TCGA-BR-8483-01 20 489203 489203 A G CSNK2A1 5'UTR 0.28 TCGA-BR-8483-01 20 49620679 49620679 C T KCNG1 Missense_Mutation p.R480Q 0.10 tolerated(0.13) benign(0.029) TCGA-BR-8483-01 20 52774694 52774694 C T CYP24A1 Silent p.P389P 0.14 TCGA-BR-8483-01 20 57428581 57428581 A C GNAS Missense_Mutation p.E87D 0.11 deleterious_low_confidence(0.01) unknown(0) TCGA-BR-8483-01 21 47552191 47552191 G A COL6A2 Missense_Mutation p.V929M 0.19 deleterious(0.05) probably_damaging(0.987) TCGA-BR-8483-01 21 47858216 47858216 T A PCNT Missense_Mutation p.L3080Q 0.42 benign(0.126) TCGA-BR-8483-01 22 24034327 24034327 G A RGL4 Missense_Mutation p.R37H 0.21 tolerated_low_confidence(0.45) benign(0) TCGA-BR-8483-01 22 38313789 38313789 A G MICALL1 Missense_Mutation p.E138G 0.20 tolerated(0.56) benign(0) TCGA-BR-8483-01 22 38470942 38470942 G A PICK1 Missense_Mutation p.V351M 0.39 tolerated(0.14) benign(0.232) TCGA-BR-8483-01 22 40745872 40745872 G A ADSL Missense_Mutation p.E64K 0.22 deleterious(0) probably_damaging(0.942) TCGA-BR-8483-01 22 42905109 42905109 T C RRP7A 3'Flank 0.20 TCGA-BR-8483-01 22 50616205 50616205 G A PANX2 Missense_Mutation p.R355H 0.24 deleterious(0) probably_damaging(0.999) TCGA-BR-8483-01 2 113789312 113789312 A C IL36B 5'UTR 0.30 TCGA-BR-8483-01 2 122007204 122007204 T A TFCP2L1 Silent p.R78R 0.19 TCGA-BR-8483-01 2 142004919 142004919 T G LRP1B Missense_Mutation p.Q156H 0.25 possibly_damaging(0.522) TCGA-BR-8483-01 2 152554096 152554096 A G NEB Missense_Mutation p.F407L 0.19 possibly_damaging(0.755) TCGA-BR-8483-01 2 155306925 155306925 A G GALNT13 Silent p.R511R 0.13 TCGA-BR-8483-01 2 179469800 179469800 G A TTN Missense_Mutation p.A18035V 0.16 TCGA-BR-8483-01 2 179592983 179592983 G T TTN Missense_Mutation p.T6523K 0.10 TCGA-BR-8483-01 2 201477352 201477352 C A AOX1 Missense_Mutation p.F428L 0.21 tolerated(0.15) probably_damaging(0.999) TCGA-BR-8483-01 2 215843627 215843627 T C ABCA12 Silent p.K1626K 0.39 TCGA-BR-8483-01 2 217525405 217525405 G T IGFBP2 Missense_Mutation p.V190L 0.29 tolerated(0.14) benign(0.022) TCGA-BR-8483-01 2 220422982 220422982 G A OBSL1 Silent p.H1142H 0.39 TCGA-BR-8483-01 2 223163349 223163349 C T PAX3 5'UTR 0.28 TCGA-BR-8483-01 2 225266407 225266407 T A FAM124B Missense_Mutation p.T27S 0.20 tolerated(0.06) benign(0.118) TCGA-BR-8483-01 2 230377546 230377546 G T DNER Missense_Mutation p.A367E 0.24 tolerated(0.78) benign(0.21) TCGA-BR-8483-01 2 25057468 25057468 G A ADCY3 Missense_Mutation p.P618L 0.21 deleterious(0.01) benign(0.005) TCGA-BR-8483-01 2 48687039 48687039 C T PPP1R21 Silent p.N174N 0.18 TCGA-BR-8483-01 2 63092028 63092029 - A EHBP1 Frame_Shift_Ins p.N344Kfs*14 0.13 TCGA-BR-8483-01 2 71058830 71058830 A T CD207 Splice_Site p.X279_splice 0.19 TCGA-BR-8483-01 2 84518353 84518353 G C FUNDC2P2 RNA 0.20 TCGA-BR-8483-01 3 119165885 119165886 - T TMEM39A Frame_Shift_Ins p.N185Kfs*22 0.38 TCGA-BR-8483-01 3 150377783 150377783 A G FAM194A Missense_Mutation p.Y630H 0.17 deleterious(0) probably_damaging(0.999) TCGA-BR-8483-01 3 165547877 165547877 T C BCHE Silent p.S315S 0.28 TCGA-BR-8483-01 3 19554711 19554711 A C KCNH8 Missense_Mutation p.T777P 0.32 tolerated(0.38) benign(0.079) TCGA-BR-8483-01 3 42264612 42264612 A G TRAK1 Missense_Mutation p.I749V 0.43 deleterious(0) probably_damaging(0.986) TCGA-BR-8483-01 3 62459861 62459861 T C CADPS Missense_Mutation p.E1155G 0.25 deleterious(0) benign(0.403) TCGA-BR-8483-01 4 101342536 101342536 T G EMCN Splice_Site p.X190_splice 0.45 TCGA-BR-8483-01 4 126412593 126412593 A G FAT4 Silent p.Q4872Q 0.37 TCGA-BR-8483-01 4 155254426 155254426 C T DCHS2 Silent p.A479A 0.40 TCGA-BR-8483-01 4 502758 502758 C T PIGG Silent p.P300P 0.47 TCGA-BR-8483-01 4 52862164 52862164 C T LRRC66 Missense_Mutation p.G342S 0.18 tolerated(0.67) benign(0.005) TCGA-BR-8483-01 4 94138146 94138146 A G GRID2 Intron 0.37 TCGA-BR-8483-01 5 10402501 10402501 G A MARCH6 Silent p.L353L 0.40 TCGA-BR-8483-01 5 140221992 140221992 C T PCDHA8 Silent p.D362D 0.28 TCGA-BR-8483-01 5 140348338 140348338 C T PCDHAC2 Nonsense_Mutation p.R663* 0.44 TCGA-BR-8483-01 6 152631870 152631870 G A SYNE1 Nonsense_Mutation p.R5617* 0.19 TCGA-BR-8483-01 6 161139469 161139469 C G PLG Missense_Mutation p.P311A 0.22 deleterious(0) probably_damaging(0.944) TCGA-BR-8483-01 6 55300436 55300436 C T HMGCLL1 3'UTR 0.28 TCGA-BR-8483-01 6 56347545 56347545 C T DST Missense_Mutation p.R4490H 0.23 probably_damaging(1) TCGA-BR-8483-01 6 96651145 96651145 C A FUT9 Missense_Mutation p.F38L 0.39 tolerated(0.65) benign(0.001) TCGA-BR-8483-01 7 102988185 102988185 G T PSMC2 Missense_Mutation p.Q9H 0.14 tolerated_low_confidence(0.12) benign(0.398) TCGA-BR-8483-01 7 105401641 105401641 T A ATXN7L1 Intron 0.20 TCGA-BR-8483-01 7 1132278 1132278 C A GPER1 Missense_Mutation p.T305K 0.16 deleterious(0) probably_damaging(0.918) TCGA-BR-8483-01 7 117396625 117396625 T A CTTNBP2 Missense_Mutation p.Q1111L 0.15 deleterious(0) possibly_damaging(0.479) TCGA-BR-8483-01 7 134215525 134215525 A G AKR1B10 Missense_Mutation p.K66R 0.16 deleterious(0.01) benign(0.017) TCGA-BR-8483-01 7 15458194 15458194 T C AGMO Missense_Mutation p.I200V 0.16 deleterious(0) possibly_damaging(0.874) TCGA-BR-8483-01 7 155457902 155457902 C T RBM33 Missense_Mutation p.A26V 0.19 deleterious(0) unknown(0) TCGA-BR-8483-01 7 37955825 37955825 G A SFRP4 Silent p.R105R 0.50 TCGA-BR-8483-01 7 42004495 42004495 G T GLI3 Missense_Mutation p.S1392R 0.36 deleterious_low_confidence(0.04) benign(0.157) TCGA-BR-8483-01 7 42005385 42005385 C T GLI3 Missense_Mutation p.V1096M 0.13 tolerated(0.18) benign(0.298) TCGA-BR-8483-01 7 48314339 48314339 C A ABCA13 Missense_Mutation p.F1692L 0.17 probably_damaging(0.994) TCGA-BR-8483-01 7 48511147 48511147 G A ABCA13 Missense_Mutation p.R4309H 0.62 benign(0) TCGA-BR-8483-01 7 57187647 57187647 G T ZNF479 Missense_Mutation p.P492H 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8483-01 7 6731976 6731976 A G ZNF12 Silent p.Y199Y 0.35 TCGA-BR-8483-01 7 82578926 82578926 C A PCLO Missense_Mutation p.D3660Y 0.16 unknown(0) TCGA-BR-8483-01 7 92732584 92732584 C T SAMD9 Missense_Mutation p.G943R 0.08 deleterious(0) possibly_damaging(0.85) TCGA-BR-8483-01 7 92732585 92732585 T C SAMD9 Silent p.L942L 0.08 TCGA-BR-8483-01 8 106815342 106815342 A - ZFPM2 Frame_Shift_Del p.N1012Mfs*16 0.22 TCGA-BR-8483-01 8 131066903 131066903 C T ASAP1 3'UTR 0.18 TCGA-BR-8483-01 8 131793086 131793086 G A ADCY8 Silent p.G1102G 0.51 TCGA-BR-8483-01 8 13356639 13356639 A G DLC1 Silent p.D314D 0.08 TCGA-BR-8483-01 8 139180179 139180179 G A FAM135B Missense_Mutation p.P406L 0.12 deleterious(0) probably_damaging(1) TCGA-BR-8483-01 8 139609182 139609182 C T COL22A1 Missense_Mutation p.R1466Q 0.12 unknown(0) TCGA-BR-8483-01 8 140630778 140630778 C A KCNK9 Missense_Mutation p.R283L 0.14 tolerated(0.14) benign(0.024) TCGA-BR-8483-01 8 144993781 144993781 C T PLEC Missense_Mutation p.R3540Q 0.23 probably_damaging(0.93) TCGA-BR-8483-01 8 22428560 22428560 C T SORBS3 Silent p.D523D 0.20 TCGA-BR-8483-01 8 65527645 65527645 T G CYP7B1 Missense_Mutation p.K332T 0.11 deleterious(0.03) probably_damaging(0.988) TCGA-BR-8483-01 8 69020559 69020559 G A PREX2 Silent p.S977S 0.14 TCGA-BR-8483-01 8 77618402 77618402 G A ZFHX4 Silent p.T693T 0.12 TCGA-BR-8483-01 8 77690512 77690512 C A ZFHX4 Nonsense_Mutation p.Y1054* 0.32 TCGA-BR-8483-01 9 119976675 119976675 C T ASTN2 Missense_Mutation p.G326E 0.29 tolerated_low_confidence(0.07) unknown(0) TCGA-BR-8483-01 9 138831533 138831533 G A UBAC1 Nonsense_Mutation p.Q317* 0.34 TCGA-BR-8483-01 9 18474284 18474284 C - ADAMTSL1 Frame_Shift_Del p.L19Cfs*3 0.19 TCGA-BR-8483-01 X 14708969 14708969 G T GLRA2 Missense_Mutation p.K356N 0.51 tolerated(0.07) benign(0.297) TCGA-BR-8483-01 X 153363105 153363105 G A MECP2 Silent p.A6A 1.00 TCGA-BR-8483-01 X 153586887 153586887 G T FLNA Silent p.T1508T 0.44 TCGA-BR-8483-01 X 73963017 73963017 A T KIAA2022 Missense_Mutation p.C459S 0.39 tolerated(0.16) probably_damaging(0.973) TCGA-BR-8484-01 10 118385511 118385511 C T PNLIPRP2 Missense_Mutation p.R87C 0.10 deleterious(0) probably_damaging(0.999) TCGA-BR-8484-01 10 55721560 55721560 T A PCDH15 Missense_Mutation p.R987S 0.09 tolerated(0.28) benign(0.232) TCGA-BR-8484-01 10 64415333 64415333 G A ZNF365 Intron 0.06 TCGA-BR-8484-01 10 73269927 73269927 T C CDH23-AS1 Intron 0.13 TCGA-BR-8484-01 10 85991896 85991896 C G LRIT1 Missense_Mutation p.Q553H 0.16 deleterious(0) benign(0.308) TCGA-BR-8484-01 10 87966203 87966203 G A GRID1 Silent p.P146P 0.48 TCGA-BR-8484-01 10 95119649 95119649 G A MYOF Nonsense_Mutation p.R1021* 0.07 TCGA-BR-8484-01 11 112014479 112014479 C T IL18 Missense_Mutation p.S141N 0.11 tolerated(0.34) benign(0.006) TCGA-BR-8484-01 11 124189480 124189480 A C OR8D2 Missense_Mutation p.V205G 0.07 deleterious(0) possibly_damaging(0.761) TCGA-BR-8484-01 11 197612 197612 G A ODF3 Missense_Mutation p.R54H 0.10 deleterious(0.04) benign(0.015) TCGA-BR-8484-01 11 22391671 22391671 T G SLC17A6 Missense_Mutation p.F326L 0.20 deleterious(0.02) benign(0.145) TCGA-BR-8484-01 11 83641522 83641522 G A DLG2 Missense_Mutation p.P449S 0.08 tolerated(0.06) probably_damaging(0.994) TCGA-BR-8484-01 12 124359954 124359954 G A DNAH10 Silent p.S2587S 0.17 TCGA-BR-8484-01 12 85408196 85408196 G A TSPAN19 3'UTR 0.16 TCGA-BR-8484-01 12 9885618 9885618 T A CLECL1 Silent p.G81G 0.16 TCGA-BR-8484-01 13 110829307 110829307 G A COL4A1 Missense_Mutation p.P932S 0.08 benign(0.036) TCGA-BR-8484-01 13 58207332 58207332 G A PCDH17 Missense_Mutation p.G218S 0.08 deleterious(0) probably_damaging(1) TCGA-BR-8484-01 13 61987973 61987973 C T PCDH20 Missense_Mutation p.E87K 0.43 tolerated(1) benign(0.002) TCGA-BR-8484-01 14 22392730 22392730 T C TRAV14DV4 Missense_Mutation p.S85P 0.06 TCGA-BR-8484-01 14 33046439 33046439 G A AKAP6 Silent p.E820E 0.11 TCGA-BR-8484-01 15 48055278 48055278 G A SEMA6D Missense_Mutation p.V242I 0.22 deleterious(0.01) possibly_damaging(0.781) TCGA-BR-8484-01 15 48782113 48782113 T C FBN1 Missense_Mutation p.E1006G 0.16 benign(0.077) TCGA-BR-8484-01 15 74654248 74654248 T G CYP11A1 Intron 0.17 TCGA-BR-8484-01 15 74836236 74836236 G A ARID3B 5'UTR 0.21 TCGA-BR-8484-01 16 26147589 26147589 G A HS3ST4 3'UTR 0.26 TCGA-BR-8484-01 16 30768205 30768205 G A PHKG2 Silent p.L336L 0.27 TCGA-BR-8484-01 16 55608610 55608610 A T LPCAT2 Missense_Mutation p.N428I 0.16 deleterious(0) probably_damaging(0.998) TCGA-BR-8484-01 17 3144532 3144532 C A OR1D4 RNA 0.15 TCGA-BR-8484-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.45 tolerated(0.11) benign(0.308) TCGA-BR-8484-01 18 30926368 30926368 C G CCDC178 Missense_Mutation p.K155N 0.26 deleterious(0.03) benign(0.087) TCGA-BR-8484-01 19 12256938 12256938 C A ZNF625 Missense_Mutation p.R98L 0.09 tolerated(0.16) benign(0.319) TCGA-BR-8484-01 19 22156673 22156673 T G ZNF208 Missense_Mutation p.K388T 0.09 deleterious(0.04) probably_damaging(0.996) TCGA-BR-8484-01 19 43523024 43523024 A G PSG11 Missense_Mutation p.F203L 0.09 tolerated(0.08) benign(0.014) TCGA-BR-8484-01 19 52222534 52222534 C A HAS1 Silent p.A209A 0.13 TCGA-BR-8484-01 19 53855529 53855529 G A ZNF845 Missense_Mutation p.R534Q 0.10 tolerated(0.87) benign(0.086) TCGA-BR-8484-01 19 9010988 9010988 G A MUC16 Missense_Mutation p.S12977F 0.07 possibly_damaging(0.506) TCGA-BR-8484-01 1 1267838 1267838 C T TAS1R3 Silent p.V309V 0.13 TCGA-BR-8484-01 1 152671675 152671675 C T LCE2A Missense_Mutation p.H100Y 0.11 deleterious_low_confidence(0.01) unknown(0) TCGA-BR-8484-01 1 157668421 157668421 T G FCRL3 Splice_Site p.X18_splice 0.08 TCGA-BR-8484-01 1 158549445 158549445 A G OR10X1 Missense_Mutation p.L82P 0.20 deleterious(0) probably_damaging(0.999) TCGA-BR-8484-01 1 158746982 158746982 A T OR6N2 Nonsense_Mutation p.C148* 0.10 TCGA-BR-8484-01 1 160136459 160136459 G A ATP1A4 Missense_Mutation p.A397T 0.20 tolerated(0.08) possibly_damaging(0.794) TCGA-BR-8484-01 1 161334734 161334734 C T C1orf192 3'UTR 0.15 TCGA-BR-8484-01 1 16262482 16262482 C T SPEN Silent p.P3249P 0.64 TCGA-BR-8484-01 1 175334354 175334354 A G TNR Silent p.T793T 0.08 TCGA-BR-8484-01 1 183099510 183099510 G A LAMC1 Silent p.Q1104Q 0.15 TCGA-BR-8484-01 1 190067640 190067640 T C BRINP3 Silent p.L603L 0.09 TCGA-BR-8484-01 1 201489416 201489416 C G RPS10P7 RNA 0.10 TCGA-BR-8484-01 1 238053765 238053765 A T ZP4 Silent p.A57A 0.08 TCGA-BR-8484-01 1 3807161 3807161 C T C1orf174 Missense_Mutation p.R197Q 0.50 deleterious(0.04) probably_damaging(1) TCGA-BR-8484-01 1 40766812 40766812 T C COL9A2 3'UTR 0.13 TCGA-BR-8484-01 1 44687311 44687311 G A ERI3 Silent p.D311D 0.12 TCGA-BR-8484-01 1 50659546 50659546 A G ELAVL4 Missense_Mutation p.Y172C 0.05 tolerated(0.25) benign(0.045) TCGA-BR-8484-01 1 74671570 74671570 G T FPGT 3'UTR 0.21 TCGA-BR-8484-01 1 82456476 82456476 G C LPHN2 Missense_Mutation p.V1287L 0.10 tolerated_low_confidence(0.61) benign(0.137) TCGA-BR-8484-01 20 4228874 4228874 C T ADRA1D Missense_Mutation p.R244H 0.21 tolerated(0.26) possibly_damaging(0.738) TCGA-BR-8484-01 20 46290516 46290516 C T SULF2 Splice_Site p.X832_splice 0.07 TCGA-BR-8484-01 20 46331299 46331299 G A SULF2 Silent p.N177N 0.10 TCGA-BR-8484-01 21 46602544 46602544 A G ADARB1 Missense_Mutation p.T375A 0.15 deleterious(0) probably_damaging(0.963) TCGA-BR-8484-01 22 40037148 40037148 C A CACNA1I Missense_Mutation p.N339K 0.35 deleterious(0) possibly_damaging(0.85) TCGA-BR-8484-01 2 148602741 148602741 T A ACVR2A Nonsense_Mutation p.L7* 0.33 TCGA-BR-8484-01 2 210560980 210560980 T C MAP2 Silent p.S1362S 0.06 TCGA-BR-8484-01 2 219746932 219746932 C T WNT10A Missense_Mutation p.L55F 0.29 deleterious(0.01) probably_damaging(0.994) TCGA-BR-8484-01 2 80529343 80529343 T C LRRTM1 3'UTR 0.15 TCGA-BR-8484-01 2 86364655 86364655 C T PTCD3 Silent p.S681S 0.07 TCGA-BR-8484-01 3 154146457 154146457 C T GPR149 Silent p.A316A 0.09 TCGA-BR-8484-01 3 180666236 180666236 T A FXR1 Missense_Mutation p.N124K 0.07 tolerated(0.18) benign(0.05) TCGA-BR-8484-01 4 129867285 129867285 T C SCLT1 Missense_Mutation p.N439S 0.12 tolerated(0.23) benign(0.297) TCGA-BR-8484-01 4 144106972 144106972 C T USP38 Silent p.L123L 0.13 TCGA-BR-8484-01 4 49032878 49032878 C G CWH43 Missense_Mutation p.S470C 0.23 deleterious(0) probably_damaging(0.978) TCGA-BR-8484-01 5 156753275 156753275 G A CYFIP2 Silent p.E667E 0.13 TCGA-BR-8484-01 5 176308118 176308118 C A HK3 Missense_Mutation p.V910F 0.21 deleterious(0.02) probably_damaging(0.978) TCGA-BR-8484-01 5 63256317 63256317 C T HTR1A Silent p.A410A 0.06 TCGA-BR-8484-01 6 112528344 112528344 G A LAMA4 Silent p.H100H 0.08 TCGA-BR-8484-01 6 117662377 117662377 G A ROS1 Missense_Mutation p.P1667L 0.06 tolerated(0.36) benign(0.246) TCGA-BR-8484-01 6 27778143 27778143 G A HIST1H3H Missense_Mutation p.E98K 0.15 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-BR-8484-01 6 69943236 69943236 T G BAI3 Missense_Mutation p.D845E 0.26 tolerated(0.34) probably_damaging(0.994) TCGA-BR-8484-01 7 117232021 117232021 G A CFTR Silent p.R600R 0.08 TCGA-BR-8484-01 7 120373007 120373007 T C KCND2 Missense_Mutation p.I389T 0.14 deleterious(0.02) possibly_damaging(0.756) TCGA-BR-8484-01 7 136699939 136699939 C G CHRM2 Silent p.A109A 0.13 TCGA-BR-8484-01 7 137075949 137075949 T G DGKI 3'UTR 0.18 TCGA-BR-8484-01 7 150654535 150654535 G A KCNH2 Silent p.L324L 0.16 TCGA-BR-8484-01 7 155599103 155599103 G A SHH Missense_Mutation p.T150M 0.19 deleterious(0) probably_damaging(0.994) TCGA-BR-8484-01 7 82544523 82544523 A C PCLO Missense_Mutation p.L4260R 0.13 unknown(0) TCGA-BR-8484-01 7 92760694 92760694 C T SAMD9L Missense_Mutation p.G1531S 0.04 tolerated(0.06) benign(0.09) TCGA-BR-8484-01 7 99808776 99808776 A G STAG3 Silent p.E1127E 0.13 TCGA-BR-8484-01 8 101149837 101149837 G A FBXO43 Missense_Mutation p.R544W 0.26 tolerated(0.07) benign(0.015) TCGA-BR-8484-01 8 22868070 22868070 G A RHOBTB2 Missense_Mutation p.S569N 0.06 tolerated(0.61) benign(0.02) TCGA-BR-8484-01 8 56270253 56270253 A T XKR4 Silent p.I274I 0.14 TCGA-BR-8484-01 8 99205172 99205172 C T NIPAL2 3'UTR 0.27 TCGA-BR-8484-01 9 133932371 133932371 G A LAMC3 Silent p.P665P 0.16 TCGA-BR-8484-01 9 138713938 138713938 G A CAMSAP1 Nonsense_Mutation p.Q857* 0.19 TCGA-BR-8484-01 9 21206570 21206570 G A IFNA10 Missense_Mutation p.S176L 0.35 tolerated(0.05) probably_damaging(0.983) TCGA-BR-8484-01 9 2123850 2123850 A G SMARCA2 Silent p.E1298E 0.31 TCGA-BR-8484-01 9 34257621 34257621 G A KIF24 Missense_Mutation p.P662S 0.14 tolerated(0.2) benign(0) TCGA-BR-8484-01 9 91657058 91657058 C T SHC3 Missense_Mutation p.V415M 0.39 tolerated(0.25) benign(0.012) TCGA-BR-8484-01 X 41204467 41204467 G T DDX3X Missense_Mutation p.D354Y 0.57 deleterious(0) probably_damaging(0.995) TCGA-BR-8484-01 X 53672407 53672407 T C HUWE1 Silent p.T120T 0.58 TCGA-BR-8484-01 X 65835851 65835851 T G EDA2R Missense_Mutation p.Q4H 0.18 deleterious(0.01) possibly_damaging(0.83) TCGA-BR-8484-01 X 73961095 73961095 T A KIAA2022 Missense_Mutation p.Q1099H 0.12 deleterious(0.01) possibly_damaging(0.9) TCGA-BR-8485-01 10 13370452 13370452 T A SEPHS1 Splice_Site p.X218_splice 0.06 TCGA-BR-8485-01 10 135340998 135340998 C T CYP2E1 Silent p.P33P 0.08 TCGA-BR-8485-01 10 16970291 16970291 A C CUBN Missense_Mutation p.L2046V 0.18 tolerated(0.14) benign(0.033) TCGA-BR-8485-01 10 17922668 17922668 T G MRC1L1 Missense_Mutation p.F951V 0.11 benign(0.062) TCGA-BR-8485-01 10 18957582 18957582 G C ARL5B Missense_Mutation p.W77C 0.21 deleterious(0) probably_damaging(1) TCGA-BR-8485-01 10 26310685 26310685 T G MYO3A Intron 0.43 TCGA-BR-8485-01 10 38484550 38484550 T C RP11-508N22.8 RNA 0.17 TCGA-BR-8485-01 10 53458078 53458078 C T CSTF2T Missense_Mutation p.G411D 0.05 deleterious_low_confidence(0.01) benign(0.342) TCGA-BR-8485-01 10 54074399 54074399 C T DKK1 Missense_Mutation p.P69S 0.06 tolerated(0.34) benign(0.004) TCGA-BR-8485-01 10 61011428 61011428 A C FAM13C Missense_Mutation p.L514R 0.20 deleterious(0) probably_damaging(1) TCGA-BR-8485-01 10 6520990 6520990 C T PRKCQ Silent p.P439P 0.43 TCGA-BR-8485-01 10 86131567 86131567 T A CCSER2 Silent p.P253P 0.26 TCGA-BR-8485-01 10 90435384 90435384 T G LIPF Silent p.T296T 0.17 TCGA-BR-8485-01 11 101454101 101454101 T C TRPC6 Missense_Mutation p.Q45R 0.15 tolerated_low_confidence(0.31) benign(0.016) TCGA-BR-8485-01 11 105009613 105009613 T C CARD18 Missense_Mutation p.K67R 0.28 tolerated(0.9) benign(0.002) TCGA-BR-8485-01 11 105782722 105782722 T C GRIA4 Intron 0.32 TCGA-BR-8485-01 11 107518220 107518220 T G ELMOD1 Silent p.T149T 0.10 TCGA-BR-8485-01 11 113295322 113295322 A G DRD2 Missense_Mutation p.W18R 0.25 deleterious_low_confidence(0.04) benign(0.09) TCGA-BR-8485-01 11 118392870 118392870 C T KMT2A Missense_Mutation p.R3968W 0.06 probably_damaging(0.995) TCGA-BR-8485-01 11 121008322 121008322 T G TECTA Missense_Mutation p.L1045R 0.12 tolerated(0.1) possibly_damaging(0.451) TCGA-BR-8485-01 11 123624329 123624329 T G OR6X1 Silent p.R300R 0.14 TCGA-BR-8485-01 11 123886648 123886648 T G OR10G4 Missense_Mutation p.L123V 0.10 tolerated(0.79) benign(0.144) TCGA-BR-8485-01 11 123900631 123900631 A C OR10G8 Missense_Mutation p.Y101S 0.21 deleterious(0) probably_damaging(0.918) TCGA-BR-8485-01 11 124007748 124007748 A G VWA5A Missense_Mutation p.K551R 0.18 tolerated(0.5) benign(0.225) TCGA-BR-8485-01 11 17793502 17793502 G A KCNC1 Silent p.L287L 0.07 TCGA-BR-8485-01 11 20907078 20907078 T C NELL1 Silent p.L199L 0.26 TCGA-BR-8485-01 11 2549242 2549242 C T KCNQ1 Silent p.F157F 0.20 TCGA-BR-8485-01 11 26663444 26663444 T C ANO3 Silent p.L715L 0.36 TCGA-BR-8485-01 11 30033274 30033274 A T KCNA4 Missense_Mutation p.L318I 0.32 tolerated(0.1) benign(0.079) TCGA-BR-8485-01 11 30973999 30973999 A C DCDC1 Missense_Mutation p.L903R 0.22 deleterious(0) possibly_damaging(0.554) TCGA-BR-8485-01 11 31451978 31451978 G T DNAJC24 3'UTR 0.18 TCGA-BR-8485-01 11 31454111 31454111 C A IMMP1L Missense_Mutation p.W146L 0.15 deleterious(0.04) probably_damaging(0.998) TCGA-BR-8485-01 11 48327862 48327862 T G OR4S1 Missense_Mutation p.F30V 0.15 deleterious(0.02) benign(0) TCGA-BR-8485-01 11 4843208 4843208 T C OR51F2 Missense_Mutation p.L198P 0.20 deleterious(0) probably_damaging(0.958) TCGA-BR-8485-01 11 49597963 49597963 A C RP11-707M1.1 RNA 0.15 TCGA-BR-8485-01 11 49974429 49974429 T G OR4C13 Missense_Mutation p.L152R 0.29 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-BR-8485-01 11 51411522 51411522 T C OR4A5 Missense_Mutation p.R292G 0.17 deleterious_low_confidence(0) benign(0.098) TCGA-BR-8485-01 11 55563320 55563320 T G OR5D14 Missense_Mutation p.F97V 0.10 tolerated(0.6) benign(0) TCGA-BR-8485-01 11 55653074 55653074 A C TRIM51 Missense_Mutation p.K57T 0.18 tolerated(0.17) benign(0.084) TCGA-BR-8485-01 11 55659067 55659067 T C TRIM51 Missense_Mutation p.S440P 0.30 deleterious(0.03) probably_damaging(0.998) TCGA-BR-8485-01 11 55905014 55905014 A G OR8J3 Missense_Mutation p.F61L 0.14 deleterious(0) probably_damaging(0.995) TCGA-BR-8485-01 11 55944631 55944631 G T OR5J2 Missense_Mutation p.D180Y 0.14 deleterious(0) probably_damaging(1) TCGA-BR-8485-01 11 56020319 56020319 T A OR5T3 Missense_Mutation p.L215H 0.15 deleterious(0) probably_damaging(0.999) TCGA-BR-8485-01 11 56113842 56113842 T G OR8K1 Missense_Mutation p.F110V 0.26 deleterious_low_confidence(0.01) benign(0.301) TCGA-BR-8485-01 11 56309940 56309940 T A OR5M11 Missense_Mutation p.K265M 0.23 deleterious(0.02) possibly_damaging(0.653) TCGA-BR-8485-01 11 5809914 5809914 A C OR52N1 Missense_Mutation p.F45V 0.31 tolerated(0.49) benign(0.044) TCGA-BR-8485-01 11 58979085 58979085 C T MPEG1 Silent p.P418P 0.16 TCGA-BR-8485-01 11 59599167 59599167 T C GIF Silent p.V392V 0.05 TCGA-BR-8485-01 11 59609977 59609977 G A GIF Silent p.T150T 0.22 TCGA-BR-8485-01 11 65562559 65562559 C T OVOL1 Missense_Mutation p.T184M 0.12 deleterious(0) probably_damaging(0.988) TCGA-BR-8485-01 11 7064294 7064294 A C NLRP14 Missense_Mutation p.K346T 0.27 deleterious(0.01) probably_damaging(0.932) TCGA-BR-8485-01 11 803460 803460 C T PIDD Silent p.P141P 0.17 TCGA-BR-8485-01 11 84996396 84996396 A G DLG2 Silent p.F18F 0.22 TCGA-BR-8485-01 11 88258487 88258487 T G GRM5 Missense_Mutation p.T906P 0.21 tolerated_low_confidence(0.25) benign(0.001) TCGA-BR-8485-01 11 88781120 88781120 T A GRM5 5'UTR 0.25 TCGA-BR-8485-01 11 88911404 88911404 T C TYR Missense_Mutation p.F95L 0.19 deleterious(0) probably_damaging(0.995) TCGA-BR-8485-01 11 94732108 94732108 A C KDM4D Nonstop_Mutation p.*524Yext*29 0.20 TCGA-BR-8485-01 12 10005931 10005931 T G CLEC2B Silent p.R140R 0.16 TCGA-BR-8485-01 12 107141233 107141233 C T RFX4 Missense_Mutation p.T560M 0.07 deleterious_low_confidence(0) possibly_damaging(0.854) TCGA-BR-8485-01 12 111957774 111957774 C T ATXN2 Missense_Mutation p.A459T 0.22 probably_damaging(1) TCGA-BR-8485-01 12 120106129 120106129 G A PRKAB1 Missense_Mutation p.G27D 0.21 deleterious(0.04) benign(0.093) TCGA-BR-8485-01 12 126138479 126138479 C T TMEM132B Silent p.R820R 0.18 TCGA-BR-8485-01 12 126139242 126139242 C G TMEM132B Missense_Mutation p.Q1075E 0.06 deleterious(0.05) benign(0.346) TCGA-BR-8485-01 12 132325352 132325352 C T MMP17 Silent p.A219A 0.16 TCGA-BR-8485-01 12 21392083 21392083 T G SLCO1B1 Missense_Mutation p.F679C 0.11 tolerated(0.17) benign(0.008) TCGA-BR-8485-01 12 21919240 21919240 T G KCNJ8 Missense_Mutation p.K231T 0.20 deleterious(0) benign(0.13) TCGA-BR-8485-01 12 22025656 22025656 T G ABCC9 Missense_Mutation p.T701P 0.17 deleterious(0) probably_damaging(0.999) TCGA-BR-8485-01 12 29608191 29608191 T C OVCH1 Missense_Mutation p.K810E 0.25 tolerated(0.07) possibly_damaging(0.794) TCGA-BR-8485-01 12 40668743 40668743 T G LRRK2 Missense_Mutation p.I630S 0.17 deleterious(0.01) benign(0.302) TCGA-BR-8485-01 12 40740625 40740625 T G LRRK2 Silent p.G2060G 0.17 TCGA-BR-8485-01 12 43860519 43860519 T G ADAMTS20 Missense_Mutation p.S435R 0.14 deleterious(0) benign(0.185) TCGA-BR-8485-01 12 45409997 45409997 A C DBX2 3'UTR 0.15 TCGA-BR-8485-01 12 53878136 53878136 G A MAP3K12 Nonsense_Mutation p.R385* 0.08 TCGA-BR-8485-01 12 55725759 55725759 A C OR6C3 Missense_Mutation p.N92T 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.557) TCGA-BR-8485-01 12 59307779 59307779 T C LRIG3 Missense_Mutation p.I123V 0.14 tolerated(0.15) benign(0.12) TCGA-BR-8485-01 12 72969051 72969051 T C TRHDE Silent p.T671T 0.17 TCGA-BR-8485-01 12 75444468 75444468 A G KCNC2 Silent p.G439G 0.22 TCGA-BR-8485-01 12 77438527 77438527 T G E2F7 Missense_Mutation p.K293T 0.24 deleterious(0) probably_damaging(1) TCGA-BR-8485-01 12 79747354 79747354 C A SYT1 Missense_Mutation p.L295M 0.15 tolerated(0.07) possibly_damaging(0.654) TCGA-BR-8485-01 12 81283099 81283099 T G LIN7A Missense_Mutation p.E44D 0.14 tolerated(0.28) benign(0.001) TCGA-BR-8485-01 12 81741391 81741391 G A PPFIA2 Missense_Mutation p.P718L 0.40 deleterious(0.01) probably_damaging(0.969) TCGA-BR-8485-01 12 85626509 85626509 T G LRRIQ1 Missense_Mutation p.L1664R 0.13 tolerated(0.32) benign(0.113) TCGA-BR-8485-01 12 86383276 86383276 T C MGAT4C Missense_Mutation p.M17V 0.17 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-BR-8485-01 12 92818588 92818588 A G CLLU1 Missense_Mutation p.I44M 0.26 unknown(0) TCGA-BR-8485-01 12 9303324 9303324 T G PZP Missense_Mutation p.S1434R 0.29 tolerated(0.05) possibly_damaging(0.736) TCGA-BR-8485-01 13 101833582 101833582 A G NALCN Intron 0.18 TCGA-BR-8485-01 13 26620785 26620785 C T SHISA2 Missense_Mutation p.V252M 0.25 tolerated(0.23) benign(0.322) TCGA-BR-8485-01 13 36776025 36776025 T C SOHLH2 Missense_Mutation p.K162R 0.30 tolerated(0.29) benign(0.003) TCGA-BR-8485-01 13 37269503 37269503 C G SERTM1 Silent p.S96S 0.28 TCGA-BR-8485-01 13 38211727 38211727 T G TRPC4 Missense_Mutation p.E754D 0.17 deleterious(0.02) probably_damaging(0.991) TCGA-BR-8485-01 13 38229328 38229328 T C TRPC4 Missense_Mutation p.E594G 0.32 deleterious(0.01) possibly_damaging(0.856) TCGA-BR-8485-01 13 39262883 39262883 T C FREM2 Silent p.L468L 0.20 TCGA-BR-8485-01 13 70314643 70314643 T G KLHL1 Missense_Mutation p.D562A 0.16 deleterious(0) probably_damaging(0.997) TCGA-BR-8485-01 13 75936660 75936660 G T TBC1D4 Missense_Mutation p.D194E 0.06 tolerated(0.24) benign(0.217) TCGA-BR-8485-01 13 96237108 96237108 A G DZIP1 Silent p.S802S 0.20 TCGA-BR-8485-01 13 99114041 99114041 A C STK24 Missense_Mutation p.L359W 0.23 deleterious(0.04) benign(0.005) TCGA-BR-8485-01 14 20295735 20295735 T G OR4N2 Missense_Mutation p.F43C 0.17 deleterious(0.01) possibly_damaging(0.592) TCGA-BR-8485-01 14 23869976 23869976 T A MYH6 Missense_Mutation p.K451M 0.35 deleterious(0) possibly_damaging(0.643) TCGA-BR-8485-01 14 42356513 42356513 A G LRFN5 Missense_Mutation p.S229G 0.19 tolerated(0.54) benign(0.001) TCGA-BR-8485-01 14 70634007 70634007 T G SLC8A3 Missense_Mutation p.K378T 0.24 tolerated(0.11) possibly_damaging(0.468) TCGA-BR-8485-01 14 94754773 94754773 T G SERPINA10 Missense_Mutation p.K281T 0.10 tolerated(0.11) benign(0.03) TCGA-BR-8485-01 14 94933607 94933607 A C SERPINA9 Silent p.A265A 0.19 TCGA-BR-8485-01 15 25219587 25219587 G T SNRPN 5'UTR 0.23 TCGA-BR-8485-01 15 33928718 33928718 G A RYR3 Missense_Mutation p.E1175K 0.31 probably_damaging(0.999) TCGA-BR-8485-01 15 40258023 40258023 G A EIF2AK4 Silent p.K332K 0.23 TCGA-BR-8485-01 15 48533782 48533782 T C SLC12A1 Missense_Mutation p.V429A 0.28 deleterious(0.03) benign(0.237) TCGA-BR-8485-01 15 49284561 49284561 C T SECISBP2L Silent p.G1062G 0.25 TCGA-BR-8485-01 15 54307854 54307854 A G UNC13C Silent p.Q918Q 0.33 TCGA-BR-8485-01 15 54435824 54435824 T C UNC13C Missense_Mutation p.I1005T 0.22 tolerated_low_confidence(0.11) benign(0.111) TCGA-BR-8485-01 15 72037465 72037465 C T THSD4 Missense_Mutation p.R643C 0.31 deleterious(0.02) possibly_damaging(0.773) TCGA-BR-8485-01 15 86807985 86807985 A G AGBL1 Missense_Mutation p.K482R 0.29 tolerated(0.28) benign(0.004) TCGA-BR-8485-01 16 1034896 1034896 A C SOX8 Missense_Mutation p.E284A 0.16 deleterious(0) possibly_damaging(0.849) TCGA-BR-8485-01 16 19451929 19451929 A G TMC5 Missense_Mutation p.H190R 0.14 tolerated_low_confidence(0.1) benign(0.002) TCGA-BR-8485-01 16 19451957 19451957 A T TMC5 Silent p.A199A 0.15 TCGA-BR-8485-01 16 20975134 20975134 A G DNAH3 Missense_Mutation p.Y3358H 0.10 deleterious(0) probably_damaging(0.98) TCGA-BR-8485-01 16 48174824 48174824 A C ABCC12 Missense_Mutation p.L144R 0.13 deleterious(0) possibly_damaging(0.89) TCGA-BR-8485-01 16 76523743 76523743 T G CNTNAP4 Silent p.T608T 0.25 TCGA-BR-8485-01 16 77397765 77397765 T G ADAMTS18 Missense_Mutation p.K330N 0.18 deleterious(0.02) possibly_damaging(0.838) TCGA-BR-8485-01 16 83159046 83159046 G A CDH13 Silent p.V188V 0.09 TCGA-BR-8485-01 16 89922632 89922632 T G SPIRE2 Missense_Mutation p.W364G 0.50 tolerated(0.33) benign(0.34) TCGA-BR-8485-01 16 9923493 9923493 A C GRIN2A Silent p.S598S 0.28 TCGA-BR-8485-01 17 10542945 10542945 T C MYH3 Missense_Mutation p.K953E 0.29 deleterious(0.02) benign(0.014) TCGA-BR-8485-01 17 15142792 15142792 A C PMP22 Silent p.L105L 0.26 TCGA-BR-8485-01 17 34234052 34234052 T C AC015849.16 RNA 0.33 TCGA-BR-8485-01 17 41122335 41122335 T A PTGES3L Nonsense_Mutation p.R140* 0.07 TCGA-BR-8485-01 17 4497135 4497135 C T SMTNL2 Missense_Mutation p.T250M 0.22 deleterious(0.03) benign(0.013) TCGA-BR-8485-01 17 45901489 45901489 A T MRPL10 3'UTR 0.29 TCGA-BR-8485-01 17 47075088 47075088 C A IGF2BP1 5'UTR 0.24 TCGA-BR-8485-01 17 51902400 51902400 A G KIF2B Missense_Mutation p.K669R 0.15 deleterious_low_confidence(0.02) benign(0.169) TCGA-BR-8485-01 17 57290673 57290673 C T SMG8 Missense_Mutation p.A830V 0.13 tolerated(0.12) benign(0.102) TCGA-BR-8485-01 17 8644934 8644934 A G CCDC42 Missense_Mutation p.L117P 0.31 tolerated(0.25) probably_damaging(0.941) TCGA-BR-8485-01 17 9739737 9739737 T G GLP2R Silent p.S109S 0.28 TCGA-BR-8485-01 18 21526174 21526174 A C LAMA3 Missense_Mutation p.S3093R 0.33 benign(0.02) TCGA-BR-8485-01 18 29218671 29218671 A - B4GALT6 Frame_Shift_Del p.F175Sfs*4 0.15 TCGA-BR-8485-01 18 30275464 30275466 AAG - KLHL14 In_Frame_Del p.F373del 0.20 TCGA-BR-8485-01 18 42281639 42281639 A G SETBP1 Missense_Mutation p.T110A 0.31 tolerated(0.3) probably_damaging(0.987) TCGA-BR-8485-01 18 5406839 5406839 G A EPB41L3 Silent p.S762S 0.28 TCGA-BR-8485-01 18 5969416 5969416 T C L3MBTL4 Silent p.Q539Q 0.26 TCGA-BR-8485-01 18 61322928 61322928 T G SERPINB3 Missense_Mutation p.N379T 0.27 deleterious(0.01) possibly_damaging(0.831) TCGA-BR-8485-01 18 6870702 6870702 G A ARHGAP28 Missense_Mutation p.E150K 0.32 tolerated(1) benign(0.001) TCGA-BR-8485-01 18 70205481 70205481 A G CBLN2 Missense_Mutation p.L202P 0.26 deleterious(0) probably_damaging(0.996) TCGA-BR-8485-01 18 74616428 74616428 T C ZNF236 Missense_Mutation p.Y661H 0.09 deleterious(0.01) possibly_damaging(0.535) TCGA-BR-8485-01 19 14875404 14875404 C T EMR2 Missense_Mutation p.D309N 0.22 deleterious(0.03) benign(0.052) TCGA-BR-8485-01 19 22156135 22156135 G T ZNF208 Silent p.T567T 0.31 TCGA-BR-8485-01 19 23159521 23159521 A G ZNF728 Silent p.H206H 0.37 TCGA-BR-8485-01 19 36164136 36164136 C A UPK1A Nonsense_Mutation p.Y96* 0.26 TCGA-BR-8485-01 19 38023304 38023304 A C ZNF793 Missense_Mutation p.E21A 0.10 deleterious(0) probably_damaging(0.997) TCGA-BR-8485-01 19 38057008 38057008 T C ZNF571 Missense_Mutation p.M108V 0.39 tolerated(0.29) benign(0.267) TCGA-BR-8485-01 19 43372094 43372094 A C PSG1 3'UTR 0.11 TCGA-BR-8485-01 19 45322958 45322958 C T BCAM Missense_Mutation p.R580C 0.09 tolerated(0.36) benign(0) TCGA-BR-8485-01 19 53669150 53669150 C A ZNF665 Missense_Mutation p.R198I 0.34 tolerated(0.32) benign(0.01) TCGA-BR-8485-01 19 53993839 53993839 A C ZNF813 Missense_Mutation p.K118T 0.09 tolerated(0.08) possibly_damaging(0.638) TCGA-BR-8485-01 19 55098681 55098681 A C LILRA2 Missense_Mutation p.Q440H 0.07 deleterious(0.05) benign(0.125) TCGA-BR-8485-01 19 56422095 56422095 T A NLRP13 Missense_Mutation p.S706C 0.09 tolerated(0.06) possibly_damaging(0.527) TCGA-BR-8485-01 19 57723986 57723986 A G ZNF264 Silent p.G507G 0.15 TCGA-BR-8485-01 19 57743421 57743421 A G AURKC Missense_Mutation p.D42G 0.20 deleterious(0) possibly_damaging(0.686) TCGA-BR-8485-01 19 57802744 57802744 C T ZNF460 Missense_Mutation p.P279S 0.07 tolerated(0.14) possibly_damaging(0.489) TCGA-BR-8485-01 19 58152347 58152347 A C ZNF211 Missense_Mutation p.S230R 0.18 tolerated(0.7) possibly_damaging(0.684) TCGA-BR-8485-01 19 58421261 58421261 A C ZNF417 Missense_Mutation p.L129V 0.15 deleterious(0.01) possibly_damaging(0.718) TCGA-BR-8485-01 19 58491404 58491404 A G ZNF606 Missense_Mutation p.L215P 0.17 tolerated(0.15) benign(0.278) TCGA-BR-8485-01 19 58640334 58640334 A C ZNF329 Missense_Mutation p.N179K 0.12 tolerated(0.19) benign(0.006) TCGA-BR-8485-01 19 9058642 9058642 T C MUC16 Missense_Mutation p.T9602A 0.19 unknown(0) TCGA-BR-8485-01 19 9075479 9075479 T G MUC16 Missense_Mutation p.Q3989H 0.48 unknown(0) TCGA-BR-8485-01 19 9075509 9075509 A C MUC16 Silent p.S3979S 0.10 TCGA-BR-8485-01 19 9083248 9083248 T C MUC16 Missense_Mutation p.E2856G 0.25 unknown(0) TCGA-BR-8485-01 1 152127241 152127241 G A RPTN Silent p.D778D 0.23 TCGA-BR-8485-01 1 152777850 152777850 A C LCE1C Silent p.P35P 0.37 TCGA-BR-8485-01 1 158368403 158368403 A C OR10T2 Missense_Mutation p.L285R 0.17 deleterious(0) probably_damaging(0.999) TCGA-BR-8485-01 1 158517216 158517216 A C OR6Y1 Missense_Mutation p.L227R 0.31 deleterious(0.01) possibly_damaging(0.908) TCGA-BR-8485-01 1 158590195 158590195 T G SPTA1 Missense_Mutation p.K2061T 0.42 deleterious(0) benign(0.122) TCGA-BR-8485-01 1 159163747 159163747 A G CADM3 Missense_Mutation p.D237G 0.37 deleterious(0) benign(0.373) TCGA-BR-8485-01 1 159557683 159557683 T G APCS 5'UTR 0.40 TCGA-BR-8485-01 1 165513480 165513480 T C LRRC52 5'UTR 0.25 TCGA-BR-8485-01 1 179965870 179965870 T G CEP350 Missense_Mutation p.V193G 0.43 possibly_damaging(0.466) TCGA-BR-8485-01 1 179972336 179972336 G A CEP350 Missense_Mutation p.R349Q 0.18 probably_damaging(0.999) TCGA-BR-8485-01 1 186106025 186106025 A C HMCN1 Missense_Mutation p.N4513T 0.32 probably_damaging(0.996) TCGA-BR-8485-01 1 196459020 196459020 A C KCNT2 Missense_Mutation p.L75V 0.28 tolerated(0.66) benign(0.02) TCGA-BR-8485-01 1 196967334 196967334 T C CFHR5 Silent p.F349F 0.47 TCGA-BR-8485-01 1 196967340 196967340 T G CFHR5 Missense_Mutation p.H351Q 0.45 deleterious(0) probably_damaging(0.998) TCGA-BR-8485-01 1 197390679 197390679 T G CRB1 Missense_Mutation p.F574C 0.35 deleterious(0) benign(0.114) TCGA-BR-8485-01 1 216258109 216258109 T G USH2A Missense_Mutation p.I1700L 0.32 benign(0.011) TCGA-BR-8485-01 1 220440002 220440002 T C RAB3GAP2 Intron 0.24 TCGA-BR-8485-01 1 233134183 233134183 T A PCNXL2 Missense_Mutation p.M1869L 0.31 tolerated(1) benign(0.001) TCGA-BR-8485-01 1 235904748 235904748 G A LYST Nonsense_Mutation p.R2778* 0.33 TCGA-BR-8485-01 1 237049613 237049613 A C MTR Missense_Mutation p.S933R 0.30 tolerated(0.19) benign(0.001) TCGA-BR-8485-01 1 240374532 240374532 A C FMN2 Missense_Mutation p.K1354N 0.27 probably_damaging(0.975) TCGA-BR-8485-01 1 248202142 248202142 T C OR2L2 Silent p.T191T 0.30 TCGA-BR-8485-01 1 248651944 248651944 A C OR2T5 Missense_Mutation p.M19L 0.16 tolerated(1) benign(0) TCGA-BR-8485-01 1 33407927 33407927 C T RNF19B Silent p.T513T 0.19 TCGA-BR-8485-01 1 35250846 35250846 G T GJB3 Silent p.L161L 0.05 TCGA-BR-8485-01 1 67861936 67861936 G A IL12RB2 3'UTR 0.15 TCGA-BR-8485-01 1 72076711 72076711 C T NEGR1 Silent p.K262K 0.20 TCGA-BR-8485-01 1 74954890 74954890 T G TNNI3K Silent p.S814S 0.28 TCGA-BR-8485-01 1 75097545 75097545 A C C1orf173 Missense_Mutation p.L224R 0.38 deleterious(0) probably_damaging(0.979) TCGA-BR-8485-01 1 7724054 7724054 T G CAMTA1 Missense_Mutation p.F483V 0.30 deleterious(0) probably_damaging(0.985) TCGA-BR-8485-01 1 79101176 79101176 T C IFI44L Splice_Site p.X292_splice 0.08 TCGA-BR-8485-01 1 79102722 79102722 T A IFI44L Missense_Mutation p.N294K 0.24 deleterious(0.01) possibly_damaging(0.7) TCGA-BR-8485-01 1 82447530 82447530 T A LPHN2 Missense_Mutation p.L1034H 0.30 deleterious(0) probably_damaging(1) TCGA-BR-8485-01 1 84412920 84412920 A G TTLL7 Silent p.T131T 0.34 TCGA-BR-8485-01 1 89449506 89449506 C G RBMXL1 Missense_Mutation p.V2L 0.17 deleterious(0.05) benign(0.018) TCGA-BR-8485-01 20 13107335 13107335 T G SPTLC3 Missense_Mutation p.L417R 0.17 deleterious(0.02) benign(0.353) TCGA-BR-8485-01 20 18505155 18505155 G C SEC23B Missense_Mutation p.E149Q 0.17 tolerated(0.12) possibly_damaging(0.653) TCGA-BR-8485-01 20 21312985 21312985 C T XRN2 Silent p.F255F 0.16 TCGA-BR-8485-01 20 25187739 25187739 A C ENTPD6 Silent p.R28R 0.04 TCGA-BR-8485-01 20 37667235 37667235 A G DHX35 3'UTR 0.20 TCGA-BR-8485-01 20 40864897 40864897 T G PTPRT Silent p.R772R 0.14 TCGA-BR-8485-01 20 47990175 47990175 T - KCNB1 Frame_Shift_Del p.N641Tfs*21 0.10 TCGA-BR-8485-01 20 53171511 53171511 A G DOK5 Missense_Mutation p.S36G 0.13 deleterious(0.05) possibly_damaging(0.539) TCGA-BR-8485-01 21 10862951 10862951 T C IGHV1OR21-1 Missense_Mutation p.F83L 0.10 deleterious(0.02) benign(0.408) TCGA-BR-8485-01 21 11049470 11049470 G A BAGE2 RNA 0.06 TCGA-BR-8485-01 21 15858379 15858379 A C SAMSN1 Missense_Mutation p.L394V 0.14 tolerated(0.4) benign(0.187) TCGA-BR-8485-01 21 19704431 19704431 A C TMPRSS15 Missense_Mutation p.F542V 0.17 deleterious(0) possibly_damaging(0.811) TCGA-BR-8485-01 21 43221454 43221454 C T PRDM15 Silent p.A1490A 0.18 TCGA-BR-8485-01 22 30640813 30640813 G T LIF Missense_Mutation p.N43K 0.08 tolerated(0.07) possibly_damaging(0.662) TCGA-BR-8485-01 22 36960743 36960743 C T CACNG2 Silent p.R209R 0.10 TCGA-BR-8485-01 2 108872118 108872118 T G SULT1C3 Missense_Mutation p.L164V 0.20 deleterious(0) benign(0.076) TCGA-BR-8485-01 2 128366344 128366344 G A MYO7B Missense_Mutation p.R902H 0.26 deleterious(0.04) possibly_damaging(0.621) TCGA-BR-8485-01 2 136023244 136023244 C G ZRANB3 Missense_Mutation p.G467R 0.15 deleterious(0) probably_damaging(0.997) TCGA-BR-8485-01 2 141200150 141200150 G A LRP1B Missense_Mutation p.T3446M 0.38 probably_damaging(0.938) TCGA-BR-8485-01 2 144764977 144764977 T G GTDC1 Missense_Mutation p.K216T 0.08 tolerated_low_confidence(0.11) benign(0.14) TCGA-BR-8485-01 2 155555450 155555450 G C KCNJ3 Missense_Mutation p.V55L 0.24 deleterious(0) benign(0.045) TCGA-BR-8485-01 2 162815046 162815046 C T SLC4A10 Missense_Mutation p.S948L 0.14 deleterious(0) probably_damaging(0.997) TCGA-BR-8485-01 2 167141153 167141153 T C SCN9A Missense_Mutation p.Q595R 0.14 tolerated(0.52) benign(0) TCGA-BR-8485-01 2 179485466 179485466 T G TTN Missense_Mutation p.S15291R 0.17 TCGA-BR-8485-01 2 179603061 179603061 C T TTN Missense_Mutation p.E4707K 0.45 TCGA-BR-8485-01 2 179615852 179615852 T A TTN Intron 0.26 TCGA-BR-8485-01 2 182374426 182374426 T C ITGA4 Silent p.A579A 0.45 TCGA-BR-8485-01 2 187692958 187692958 T G ZSWIM2 Missense_Mutation p.N552T 0.20 tolerated(0.14) benign(0.012) TCGA-BR-8485-01 2 210517880 210517880 A G MAP2 5'UTR 0.09 TCGA-BR-8485-01 2 212248779 212248779 A G ERBB4 Missense_Mutation p.L1163P 0.14 deleterious(0.03) benign(0.005) TCGA-BR-8485-01 2 215855595 215855595 G A ABCA12 Missense_Mutation p.S1152L 0.41 tolerated(1) benign(0.003) TCGA-BR-8485-01 2 228884001 228884001 T G SPHKAP Missense_Mutation p.Q523H 0.21 tolerated(0.06) benign(0.077) TCGA-BR-8485-01 2 231157373 231157373 A C SP140 Missense_Mutation p.K613T 0.27 deleterious(0) probably_damaging(0.992) TCGA-BR-8485-01 2 43547608 43547608 C A THADA Missense_Mutation p.R1472I 0.05 tolerated(0.06) benign(0.002) TCGA-BR-8485-01 2 46986226 46986226 G T SOCS5 Missense_Mutation p.G186V 0.15 deleterious(0.02) probably_damaging(0.931) TCGA-BR-8485-01 2 49191060 49191060 T G FSHR Missense_Mutation p.E300D 0.18 tolerated(0.69) benign(0.003) TCGA-BR-8485-01 2 50779932 50779932 A C NRXN1 Missense_Mutation p.L558V 0.18 deleterious(0.02) probably_damaging(0.972) TCGA-BR-8485-01 2 64779733 64779733 T A AFTPH Silent p.T375T 0.27 TCGA-BR-8485-01 2 66796234 66796234 C T MEIS1 Silent p.Y389Y 0.26 TCGA-BR-8485-01 3 107910459 107910460 AT - IFT57 Frame_Shift_Del p.I229Ffs*26 0.29 TCGA-BR-8485-01 3 111312683 111312683 C T ZBED2 Silent p.Q122Q 0.07 TCGA-BR-8485-01 3 133748643 133748643 C T SLCO2A1 Missense_Mutation p.G2R 0.33 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BR-8485-01 3 15300337 15300337 C T SH3BP5 Splice_Site p.X297_splice 0.52 TCGA-BR-8485-01 3 164905856 164905856 T C SLITRK3 Silent p.Q921Q 0.37 TCGA-BR-8485-01 3 190936627 190936627 T G OSTN Missense_Mutation p.L65R 0.25 deleterious(0) probably_damaging(1) TCGA-BR-8485-01 3 191074885 191074885 G C CCDC50 Missense_Mutation p.D20H 0.26 deleterious(0) probably_damaging(0.991) TCGA-BR-8485-01 3 28566074 28566074 A G ZCWPW2 Silent p.E322E 0.22 TCGA-BR-8485-01 3 38524780 38524780 C T ACVR2B Missense_Mutation p.S499F 0.22 deleterious(0.03) possibly_damaging(0.595) TCGA-BR-8485-01 3 74350898 74350898 T C CNTN3 Silent p.Q615Q 0.18 TCGA-BR-8485-01 3 87309019 87309019 A G POU1F1 3'UTR 0.18 TCGA-BR-8485-01 3 96706694 96706694 T A EPHA6 Missense_Mutation p.V324D 0.28 deleterious(0) probably_damaging(0.999) TCGA-BR-8485-01 3 97887637 97887637 T G OR5H15 Missense_Mutation p.L32V 0.28 deleterious(0) possibly_damaging(0.578) TCGA-BR-8485-01 4 144134809 144134809 T G USP38 Silent p.T560T 0.35 TCGA-BR-8485-01 4 144826643 144826643 G C GYPE Missense_Mutation p.I6M 0.25 deleterious_low_confidence(0) possibly_damaging(0.506) TCGA-BR-8485-01 4 153251934 153251934 G A FBXW7 Nonsense_Mutation p.Q358* 0.56 TCGA-BR-8485-01 4 155719399 155719399 T C RBM46 Silent p.A196A 0.24 TCGA-BR-8485-01 4 166999084 166999084 A C TLL1 Missense_Mutation p.S782R 0.21 tolerated(0.32) possibly_damaging(0.493) TCGA-BR-8485-01 4 5696169 5696169 T C EVC2 Missense_Mutation p.T115A 0.21 tolerated(0.19) benign(0.017) TCGA-BR-8485-01 4 68928500 68928500 G A TMPRSS11F Intron 0.27 TCGA-BR-8485-01 4 71068595 71068595 T A ODAM Silent p.A257A 0.22 TCGA-BR-8485-01 4 88732666 88732666 A G IBSP Silent p.A186A 0.26 TCGA-BR-8485-01 4 89198370 89198370 A C PPM1K Missense_Mutation p.L156V 0.12 deleterious(0.01) benign(0.417) TCGA-BR-8485-01 5 11098707 11098707 A C CTNND2 Missense_Mutation p.L873V 0.16 deleterious(0) probably_damaging(0.99) TCGA-BR-8485-01 5 11364952 11364952 A G CTNND2 Silent p.L410L 0.25 TCGA-BR-8485-01 5 115783129 115783129 G A SEMA6A Missense_Mutation p.P758L 0.22 deleterious(0) probably_damaging(0.999) TCGA-BR-8485-01 5 118969843 118969843 C A FAM170A Missense_Mutation p.Q134K 0.07 tolerated(0.16) benign(0.02) TCGA-BR-8485-01 5 121786608 121786608 A C SNCAIP Missense_Mutation p.K689T 0.30 deleterious(0) possibly_damaging(0.752) TCGA-BR-8485-01 5 13717530 13717530 T C DNAH5 Missense_Mutation p.K4200R 0.25 possibly_damaging(0.621) TCGA-BR-8485-01 5 13751329 13751329 A C DNAH5 Missense_Mutation p.F3690C 0.12 probably_damaging(0.926) TCGA-BR-8485-01 5 13824402 13824402 A C DNAH5 Missense_Mutation p.L2162R 0.16 probably_damaging(0.928) TCGA-BR-8485-01 5 13864531 13864531 A C DNAH5 Missense_Mutation p.L1524R 0.19 benign(0.003) TCGA-BR-8485-01 5 140054668 140054668 A G HARS Silent p.S415S 0.06 TCGA-BR-8485-01 5 140216285 140216285 A C PCDHA7 Missense_Mutation p.S773R 0.06 deleterious_low_confidence(0) probably_damaging(0.936) TCGA-BR-8485-01 5 140481107 140481107 T G PCDHB3 Missense_Mutation p.F292V 0.29 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-BR-8485-01 5 140554081 140554081 C T PCDHB7 Silent p.N555N 0.41 TCGA-BR-8485-01 5 140683221 140683221 A C SLC25A2 Missense_Mutation p.L71R 0.20 deleterious(0) probably_damaging(0.993) TCGA-BR-8485-01 5 154251334 154251334 G A CNOT8 Missense_Mutation p.R173H 0.28 tolerated(0.07) benign(0.013) TCGA-BR-8485-01 5 156786056 156786056 A C CYFIP2 Missense_Mutation p.N880T 0.17 tolerated(0.05) benign(0.035) TCGA-BR-8485-01 5 159776372 159776372 G A C1QTNF2 Missense_Mutation p.R266W 0.25 deleterious(0.01) probably_damaging(0.988) TCGA-BR-8485-01 5 177171957 177171957 G A FAM153A Missense_Mutation p.R14W 0.29 tolerated_low_confidence(0.12) benign(0) TCGA-BR-8485-01 5 33616122 33616122 T G ADAMTS12 Missense_Mutation p.E733D 0.14 deleterious(0) probably_damaging(0.976) TCGA-BR-8485-01 5 33937101 33937101 G A RXFP3 Missense_Mutation p.V86M 0.32 tolerated(0.06) benign(0.069) TCGA-BR-8485-01 5 41382380 41382380 T G PLCXD3 Missense_Mutation p.K120N 0.29 deleterious(0.01) possibly_damaging(0.827) TCGA-BR-8485-01 5 41382435 41382435 T C PLCXD3 Missense_Mutation p.K102R 0.13 deleterious(0.02) benign(0.401) TCGA-BR-8485-01 5 45645680 45645680 C T HCN1 Missense_Mutation p.M152I 0.17 deleterious(0.01) benign(0.009) TCGA-BR-8485-01 5 49701604 49701604 A C EMB Missense_Mutation p.C185W 0.11 tolerated(0.1) probably_damaging(0.935) TCGA-BR-8485-01 5 55412549 55412549 C T ANKRD55 Silent p.E286E 0.28 TCGA-BR-8485-01 5 665397 665397 C A TPPP Silent p.S160S 0.27 TCGA-BR-8485-01 5 89949308 89949308 G C GPR98 Missense_Mutation p.G1306A 0.21 probably_damaging(0.91) TCGA-BR-8485-01 5 89990466 89990466 T C GPR98 Silent p.A2631A 0.30 TCGA-BR-8485-01 5 90079735 90079735 T C GPR98 Missense_Mutation p.I4505T 0.36 possibly_damaging(0.84) TCGA-BR-8485-01 6 118635388 118635388 A G SLC35F1 Silent p.E400E 0.12 TCGA-BR-8485-01 6 136582556 136582556 A T BCLAF1 Silent p.T868T 0.11 TCGA-BR-8485-01 6 138584055 138584055 T G KIAA1244 Missense_Mutation p.F479V 0.25 deleterious(0) probably_damaging(0.997) TCGA-BR-8485-01 6 139094902 139094902 T G CCDC28A Missense_Mutation p.F31V 0.04 deleterious_low_confidence(0) probably_damaging(0.932) TCGA-BR-8485-01 6 152557432 152557432 T G SYNE1 Missense_Mutation p.K6736Q 0.21 benign(0.061) TCGA-BR-8485-01 6 152722378 152722378 T G SYNE1 Missense_Mutation p.Q2308H 0.16 benign(0.082) TCGA-BR-8485-01 6 153019200 153019200 A G MYCT1 Missense_Mutation p.S55G 0.30 tolerated(0.19) benign(0.115) TCGA-BR-8485-01 6 160445719 160445719 A T IGF2R Missense_Mutation p.N210I 0.23 deleterious(0) probably_damaging(1) TCGA-BR-8485-01 6 162683735 162683735 T C PARK2 Silent p.Q78Q 0.08 TCGA-BR-8485-01 6 166721313 166721313 G C PRR18 Silent p.T106T 0.41 TCGA-BR-8485-01 6 17600920 17600920 G A FAM8A1 Missense_Mutation p.E94K 0.10 deleterious(0.03) probably_damaging(0.959) TCGA-BR-8485-01 6 17629488 17629488 A C NUP153 Missense_Mutation p.F981C 0.29 deleterious(0) probably_damaging(0.986) TCGA-BR-8485-01 6 32011292 32011292 C T TNXB Missense_Mutation p.E287K 0.19 deleterious(0) benign(0.167) TCGA-BR-8485-01 6 33166234 33166234 G C RXRB Nonsense_Mutation p.S164* 0.20 TCGA-BR-8485-01 6 41704462 41704462 T C PGC 3'UTR 0.43 TCGA-BR-8485-01 6 51656136 51656136 A G PKHD1 Missense_Mutation p.F2780L 0.13 tolerated(1) benign(0.002) TCGA-BR-8485-01 6 52843163 52843163 T G GSTA4 3'UTR 0.33 TCGA-BR-8485-01 6 54212312 54212312 G A TINAG Missense_Mutation p.R299H 0.30 tolerated(0.23) benign(0.027) TCGA-BR-8485-01 6 55266591 55266591 T G GFRAL Silent p.T375T 0.18 TCGA-BR-8485-01 6 55990378 55990378 A G COL21A1 Missense_Mutation p.F546S 0.25 tolerated(0.4) benign(0.348) TCGA-BR-8485-01 6 66094372 66094372 T A EYS Missense_Mutation p.E402D 0.12 deleterious(0.04) benign(0) TCGA-BR-8485-01 6 70049300 70049300 A G BAI3 Silent p.T1121T 0.04 TCGA-BR-8485-01 6 70639447 70639447 T A COL19A1 Missense_Mutation p.L174H 0.16 deleterious(0) unknown(0) TCGA-BR-8485-01 6 75811728 75811728 A G COL12A1 Missense_Mutation p.L2819P 0.04 probably_damaging(1) TCGA-BR-8485-01 6 85466473 85466473 T G TBX18 Missense_Mutation p.Q238H 0.14 deleterious(0) probably_damaging(0.98) TCGA-BR-8485-01 7 104753074 104753074 C T KMT2E Missense_Mutation p.A1624V 0.25 tolerated_low_confidence(0.42) benign(0.089) TCGA-BR-8485-01 7 111387326 111387326 T G DOCK4 Missense_Mutation p.Q1521H 0.32 deleterious(0.03) probably_damaging(1) TCGA-BR-8485-01 7 113518066 113518066 T G PPP1R3A Missense_Mutation p.E1027D 0.29 tolerated(0.31) benign(0.012) TCGA-BR-8485-01 7 121651971 121651971 T C PTPRZ1 Silent p.T957T 0.34 TCGA-BR-8485-01 7 128846344 128846344 T C SMO Missense_Mutation p.Y394H 0.22 deleterious(0.01) probably_damaging(0.99) TCGA-BR-8485-01 7 144071926 144071926 G A ARHGEF5 Silent p.T1414T 0.18 TCGA-BR-8485-01 7 151962143 151962143 G A KMT2C Silent p.C388C 0.04 TCGA-BR-8485-01 7 153584696 153584696 T C DPP6 5'UTR 0.22 TCGA-BR-8485-01 7 19184942 19184942 T C FERD3L Missense_Mutation p.D15G 0.30 tolerated(0.11) benign(0.001) TCGA-BR-8485-01 7 21629008 21629008 A C DNAH11 Missense_Mutation p.N719T 0.27 probably_damaging(0.999) TCGA-BR-8485-01 7 31829729 31829729 T G PDE1C Intron 0.45 TCGA-BR-8485-01 7 33427710 33427710 C T BBS9 Missense_Mutation p.A690V 0.25 deleterious(0.03) possibly_damaging(0.476) TCGA-BR-8485-01 7 38433635 38433635 T C AMPH Silent p.E526E 0.27 TCGA-BR-8485-01 7 38462019 38462019 A G AMPH Splice_Site p.X424_splice 0.26 TCGA-BR-8485-01 7 42005876 42005876 T G GLI3 Missense_Mutation p.K932T 0.23 deleterious(0.03) probably_damaging(0.926) TCGA-BR-8485-01 7 44801438 44801438 C G ZMIZ2 Silent p.L510L 0.11 TCGA-BR-8485-01 7 48312083 48312083 A C ABCA13 Missense_Mutation p.E940D 0.26 benign(0.012) TCGA-BR-8485-01 7 48313132 48313132 A C ABCA13 Missense_Mutation p.E1290A 0.36 benign(0.238) TCGA-BR-8485-01 7 7412809 7412809 G A COL28A1 Missense_Mutation p.R910C 0.51 deleterious(0) probably_damaging(0.956) TCGA-BR-8485-01 7 77885431 77885431 G C MAGI2 Missense_Mutation p.Q626E 0.29 deleterious(0) probably_damaging(0.994) TCGA-BR-8485-01 7 8126036 8126036 G A GLCCI1 Silent p.T504T 0.50 TCGA-BR-8485-01 7 81346652 81346652 T G HGF Missense_Mutation p.K434T 0.31 tolerated(0.54) probably_damaging(0.948) TCGA-BR-8485-01 7 82996981 82996981 T C SEMA3E Missense_Mutation p.K750R 0.25 tolerated(0.3) benign(0.035) TCGA-BR-8485-01 7 94052389 94052389 T G COL1A2 Missense_Mutation p.F842V 0.26 unknown(0) TCGA-BR-8485-01 7 98547092 98547092 A T TRRAP Missense_Mutation p.N1607I 0.25 possibly_damaging(0.597) TCGA-BR-8485-01 7 99722428 99722428 G T CNPY4 Nonsense_Mutation p.E222* 0.35 TCGA-BR-8485-01 8 103226371 103226371 A T RRM2B Missense_Mutation p.F234I 0.12 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BR-8485-01 8 105261784 105261784 T C RIMS2 Missense_Mutation p.L1220P 0.13 deleterious_low_confidence(0) probably_damaging(1) TCGA-BR-8485-01 8 113529326 113529326 T G CSMD3 Silent p.R1565R 0.11 TCGA-BR-8485-01 8 12586497 12586497 T C LONRF1 Silent p.T641T 0.06 TCGA-BR-8485-01 8 142500269 142500269 G A MROH5 3'Flank 0.36 TCGA-BR-8485-01 8 145948654 145948654 C T ZNF251 Missense_Mutation p.A131T 0.21 tolerated(0.22) possibly_damaging(0.499) TCGA-BR-8485-01 8 26237619 26237619 T G BNIP3L 5'Flank 0.20 TCGA-BR-8485-01 8 26623516 26623516 T G ADRA1A Intron 0.21 TCGA-BR-8485-01 8 32621594 32621594 C T NRG1 Missense_Mutation p.P538S 0.36 tolerated(0.87) benign(0.028) TCGA-BR-8485-01 8 69028107 69028107 T C PREX2 Missense_Mutation p.V1089A 0.14 deleterious_low_confidence(0) benign(0.05) TCGA-BR-8485-01 8 71036127 71036127 G A NCOA2 Missense_Mutation p.P1429S 0.11 deleterious(0.01) possibly_damaging(0.786) TCGA-BR-8485-01 8 73480109 73480109 A G KCNB2 Missense_Mutation p.E47G 0.12 deleterious(0) probably_damaging(0.999) TCGA-BR-8485-01 8 77764494 77764494 G T ZFHX4 Missense_Mutation p.K1779N 0.44 possibly_damaging(0.607) TCGA-BR-8485-01 8 91033213 91033213 C G DECR1 Missense_Mutation p.T165S 0.12 deleterious(0.04) benign(0.014) TCGA-BR-8485-01 9 100124034 100124034 A C CCDC180 Missense_Mutation p.E1214D 0.19 tolerated(0.56) benign(0.388) TCGA-BR-8485-01 9 107267289 107267289 T G OR13F1 Missense_Mutation p.V249G 0.34 deleterious(0) probably_damaging(0.951) TCGA-BR-8485-01 9 125512140 125512140 A C OR1L6 Missense_Mutation p.N5T 0.28 deleterious(0.04) benign(0.437) TCGA-BR-8485-01 9 131038425 131038425 A C SWI5 Translation_Start_Site p.M1? 0.19 unknown(0) TCGA-BR-8485-01 9 131077859 131077859 G T TRUB2 Missense_Mutation p.A122D 0.29 deleterious(0.01) possibly_damaging(0.87) TCGA-BR-8485-01 9 137711978 137711978 T G COL5A1 Missense_Mutation p.I1488S 0.62 unknown(0) TCGA-BR-8485-01 9 139905696 139905696 G A ABCA2 Silent p.G1955G 0.06 TCGA-BR-8485-01 9 19372168 19372168 T G DENND4C Missense_Mutation p.I1909M 0.35 deleterious(0.01) probably_damaging(0.934) TCGA-BR-8485-01 9 19786835 19786835 A C SLC24A2 Silent p.T10T 0.30 TCGA-BR-8485-01 9 32630782 32630782 A C TAF1L Missense_Mutation p.V1599G 0.34 tolerated(0.08) possibly_damaging(0.753) TCGA-BR-8485-01 9 32632465 32632465 T C TAF1L Missense_Mutation p.K1038R 0.20 deleterious(0.02) benign(0.127) TCGA-BR-8485-01 9 35650844 35650844 G C SIT1 Missense_Mutation p.Q3E 0.23 tolerated_low_confidence(0.29) benign(0.388) TCGA-BR-8485-01 9 72131002 72131002 T C APBA1 Silent p.K375K 0.32 TCGA-BR-8485-01 9 95609123 95609123 G - ZNF484 Frame_Shift_Del p.S651* 0.28 TCGA-BR-8485-01 X 101091790 101091790 A C NXF5 Intron 0.20 TCGA-BR-8485-01 X 135750188 135750188 T G ARHGEF6 Nonstop_Mutation p.*777Yext*15 0.24 TCGA-BR-8485-01 X 138714595 138714595 A C MCF2 Missense_Mutation p.L84V 0.24 deleterious(0) probably_damaging(0.994) TCGA-BR-8485-01 X 140953386 140953386 T G MAGEC3 Missense_Mutation p.F85V 0.37 deleterious_low_confidence(0) benign(0.307) TCGA-BR-8485-01 X 140994814 140994814 T C MAGEC1 Missense_Mutation p.S542P 0.22 deleterious_low_confidence(0.02) benign(0.307) TCGA-BR-8485-01 X 150773196 150773196 T G PASD1 Missense_Mutation p.V36G 0.38 deleterious(0.04) benign(0.33) TCGA-BR-8485-01 X 152830478 152830478 G A ATP2B3 Missense_Mutation p.E1087K 0.42 tolerated(0.7) benign(0.048) TCGA-BR-8485-01 X 153592919 153592919 G A FLNA Missense_Mutation p.A666V 0.51 deleterious(0.04) possibly_damaging(0.524) TCGA-BR-8485-01 X 153940729 153940729 T G GAB3 Missense_Mutation p.S282R 0.24 tolerated(0.27) benign(0.042) TCGA-BR-8485-01 X 17153480 17153480 A C REPS2 Missense_Mutation p.S587R 0.34 tolerated(0.06) benign(0.323) TCGA-BR-8485-01 X 30254229 30254229 A G MAGEB3 Missense_Mutation p.K63R 0.15 tolerated(0.15) benign(0.02) TCGA-BR-8485-01 X 32360278 32360278 T C DMD Missense_Mutation p.K1954R 0.19 benign(0.096) TCGA-BR-8485-01 X 32430014 32430014 T G DMD Missense_Mutation p.K1363T 0.48 possibly_damaging(0.888) TCGA-BR-8485-01 X 49071806 49071806 T G CACNA1F Missense_Mutation p.N1156T 0.58 deleterious(0) benign(0.19) TCGA-BR-8485-01 X 50051704 50051704 A C CCNB3 Missense_Mutation p.K179Q 0.55 tolerated(0.09) probably_damaging(0.965) TCGA-BR-8485-01 X 53106155 53106155 A G GPR173 Missense_Mutation p.S118G 0.14 tolerated(0.36) benign(0.327) TCGA-BR-8485-01 X 54987257 54987257 T A PFKFB1 Missense_Mutation p.K106M 0.21 possibly_damaging(0.648) TCGA-BR-8485-01 X 73963789 73963789 T G KIAA2022 Silent p.S201S 0.19 TCGA-BR-8485-01 X 77528938 77528938 A G CYSLTR1 Silent p.A102A 0.39 TCGA-BR-8485-01 X 78216154 78216154 T A P2RY10 Missense_Mutation p.I46N 0.06 deleterious(0) probably_damaging(0.95) TCGA-BR-8485-01 X 79698243 79698243 A C FAM46D Missense_Mutation p.S69R 0.21 deleterious(0) probably_damaging(1) TCGA-BR-8485-01 X 83127964 83127964 A C CYLC1 Missense_Mutation p.K83T 0.25 deleterious(0.03) possibly_damaging(0.792) TCGA-BR-8485-01 X 91133643 91133643 G CT PCDH11X Frame_Shift_Ins p.D802Lfs*7 0.28 TCGA-BR-8485-01 X 9665416 9665416 T G TBL1X Missense_Mutation p.I354R 0.53 deleterious(0) probably_damaging(0.976) TCGA-BR-8486-01 10 17365124 17365124 C T ST8SIA6 Missense_Mutation p.S223N 0.63 deleterious(0) benign(0.281) TCGA-BR-8486-01 10 6525445 6525445 T C PRKCQ Missense_Mutation p.D379G 0.47 deleterious(0.01) possibly_damaging(0.803) TCGA-BR-8486-01 11 17408516 17408516 T C KCNJ11 Missense_Mutation p.M375V 0.11 tolerated(1) benign(0) TCGA-BR-8486-01 11 788451 788453 CTT - CEND1 In_Frame_Del p.K42del 0.36 TCGA-BR-8486-01 11 88300437 88300437 G T GRM5 Nonsense_Mutation p.S805* 0.06 TCGA-BR-8486-01 12 130827129 130827129 A C PIWIL1 5'UTR 0.30 TCGA-BR-8486-01 12 6675951 6675951 A G NOP2 Silent p.A47A 0.21 TCGA-BR-8486-01 14 107218778 107218778 C T IGHV3-74 Silent p.V83V 0.05 TCGA-BR-8486-01 14 30066697 30066697 C A PRKD1 Missense_Mutation p.A812S 0.23 deleterious(0.05) probably_damaging(0.973) TCGA-BR-8486-01 14 31575869 31575874 AAGTGG - HECTD1 In_Frame_Del p.P2402_L2403del 0.21 TCGA-BR-8486-01 14 37132197 37132197 C T PAX9 Nonsense_Mutation p.Q34* 0.21 TCGA-BR-8486-01 14 90651085 90651085 G A KCNK13 Missense_Mutation p.R322H 0.27 tolerated(0.08) benign(0.014) TCGA-BR-8486-01 15 48441243 48441243 T A MYEF2 Missense_Mutation p.K542I 0.26 tolerated(0.08) probably_damaging(0.999) TCGA-BR-8486-01 15 72040794 72040794 G A THSD4 Missense_Mutation p.R759H 0.28 deleterious(0) probably_damaging(0.96) TCGA-BR-8486-01 15 75308977 75308977 G A SCAMP5 Silent p.A60A 0.24 TCGA-BR-8486-01 15 78921738 78921738 C T CHRNB4 Missense_Mutation p.M303I 0.26 deleterious(0) probably_damaging(0.997) TCGA-BR-8486-01 15 85164300 85164300 A C ZSCAN2 Missense_Mutation p.N292H 0.20 tolerated(0.28) probably_damaging(0.999) TCGA-BR-8486-01 16 71218824 71218824 T G HYDIN Missense_Mutation p.M69L 0.07 benign(0.059) TCGA-BR-8486-01 17 16852283 16852283 G A TNFRSF13B Missense_Mutation p.R72C 0.11 tolerated(0.06) benign(0.404) TCGA-BR-8486-01 17 27062001 27062001 C T NEK8 Silent p.S155S 0.24 TCGA-BR-8486-01 17 3977531 3977531 C T ZZEF1 Missense_Mutation p.V1200M 0.05 deleterious(0) possibly_damaging(0.88) TCGA-BR-8486-01 17 47788765 47788765 G C FAM117A Missense_Mutation p.P405R 0.56 deleterious(0) possibly_damaging(0.567) TCGA-BR-8486-01 17 7579395 7579396 - C TP53 Frame_Shift_Ins p.P98Afs*51 0.31 TCGA-BR-8486-01 19 19746378 19746378 T G GMIP Missense_Mutation p.D469A 0.38 tolerated(0.14) benign(0.029) TCGA-BR-8486-01 1 167666869 167666869 A C RCSD1 Silent p.T336T 0.19 TCGA-BR-8486-01 1 186107009 186107009 C T HMCN1 Missense_Mutation p.T4610I 0.23 benign(0.025) TCGA-BR-8486-01 1 28339654 28339654 G A EYA3 Missense_Mutation p.A246V 0.29 tolerated(1) benign(0.002) TCGA-BR-8486-01 20 47990303 47990303 G A KCNB1 Silent p.F598F 0.48 TCGA-BR-8486-01 20 47990462 47990462 G C KCNB1 Silent p.L545L 0.48 TCGA-BR-8486-01 20 62850293 62850293 G T MYT1 Missense_Mutation p.A626S 0.10 probably_damaging(0.946) TCGA-BR-8486-01 21 47404200 47404200 G A COL6A1 Missense_Mutation p.R82Q 0.10 tolerated(0.05) unknown(0) TCGA-BR-8486-01 22 42781112 42781112 G A NFAM1 3'UTR 0.26 TCGA-BR-8486-01 2 141128795 141128795 A G LRP1B Missense_Mutation p.S3610P 0.44 possibly_damaging(0.637) TCGA-BR-8486-01 2 166900312 166900312 G A SCN1A Missense_Mutation p.A637V 0.28 tolerated(0.61) benign(0.002) TCGA-BR-8486-01 2 170493840 170493840 A G PPIG Missense_Mutation p.K691R 0.10 deleterious_low_confidence(0.01) unknown(0) TCGA-BR-8486-01 2 191851578 191851578 A G STAT1 Splice_Site p.X407_splice 0.07 TCGA-BR-8486-01 2 217070091 217070091 A T XRCC5 3'UTR 0.35 TCGA-BR-8486-01 2 220251022 220251022 G A DNPEP Missense_Mutation p.R149C 0.19 deleterious(0) probably_damaging(0.996) TCGA-BR-8486-01 2 227871780 227871780 A T COL4A4 3'UTR 0.50 TCGA-BR-8486-01 2 37082457 37082457 C T STRN Missense_Mutation p.D626N 0.32 tolerated(0.05) benign(0.178) TCGA-BR-8486-01 2 96950142 96950142 T C SNRNP200 Missense_Mutation p.N1449S 0.29 tolerated(1) benign(0.006) TCGA-BR-8486-01 3 136096591 136096591 C T STAG1 Missense_Mutation p.D761N 0.63 tolerated(0.21) benign(0.002) TCGA-BR-8486-01 3 49051915 49051915 G A WDR6 Silent p.E952E 0.48 TCGA-BR-8486-01 4 2896323 2896323 A G ADD1 Silent p.L202L 0.12 TCGA-BR-8486-01 5 131995159 131995159 G A IL13 Missense_Mutation p.G75D 0.19 tolerated(0.24) benign(0.005) TCGA-BR-8486-01 6 26032290 26032290 G A HIST1H2AB 3'Flank 0.43 TCGA-BR-8486-01 6 51900507 51900507 G T PKHD1 Missense_Mutation p.A1037D 0.20 deleterious(0) probably_damaging(0.936) TCGA-BR-8486-01 7 127326707 127326707 G T SND1 Missense_Mutation p.R40L 0.24 tolerated(0.07) benign(0.178) TCGA-BR-8486-01 7 22534434 22534434 C T STEAP1B Nonsense_Mutation p.W14* 0.14 TCGA-BR-8486-01 7 27185319 27185319 C T HOXA6 Silent p.T220T 0.09 TCGA-BR-8486-01 7 2956965 2956965 G A CARD11 Missense_Mutation p.R888C 0.34 deleterious(0) probably_damaging(1) TCGA-BR-8486-01 7 73922530 73922530 C A GTF2IRD1 Silent p.S40S 0.23 TCGA-BR-8486-01 7 73933930 73933930 C T GTF2IRD1 Missense_Mutation p.A298V 0.24 tolerated(0.94) benign(0.003) TCGA-BR-8486-01 7 82582618 82582618 C T PCLO Missense_Mutation p.D2551N 0.18 unknown(0) TCGA-BR-8486-01 7 91709233 91709233 G C AKAP9 Missense_Mutation p.E2596Q 0.31 benign(0.234) TCGA-BR-8486-01 7 99672845 99672845 G A ZNF3 Missense_Mutation p.R62W 0.27 deleterious(0.03) benign(0.001) TCGA-BR-8486-01 8 103284920 103284921 - TA UBR5 Frame_Shift_Ins p.P2271Nfs*8 0.13 TCGA-BR-8486-01 9 117087068 117087068 A T ORM1 Splice_Site p.X110_splice 0.37 TCGA-BR-8486-01 9 136531865 136531865 C T SARDH Missense_Mutation p.G875S 0.29 deleterious(0.02) probably_damaging(0.959) TCGA-BR-8486-01 X 11157185 11157185 G A ARHGAP6 Missense_Mutation p.T908M 0.30 tolerated_low_confidence(0.12) benign(0.047) TCGA-BR-8486-01 X 118370534 118370534 C T PGRMC1 Missense_Mutation p.R70W 0.11 deleterious(0) possibly_damaging(0.733) TCGA-BR-8486-01 X 118972014 118972014 T C UPF3B Silent p.R336R 0.06 TCGA-BR-8486-01 X 123556374 123556374 C T TENM1 Missense_Mutation p.A1407T 0.31 deleterious(0) probably_damaging(0.973) TCGA-BR-8486-01 X 132548987 132548987 G A GPC4 Missense_Mutation p.R3W 0.09 tolerated_low_confidence(0.08) possibly_damaging(0.876) TCGA-BR-8486-01 X 149787547 149787547 G T MTM1 Missense_Mutation p.G127C 0.09 deleterious(0.01) probably_damaging(0.968) TCGA-BR-8486-01 X 151909336 151909336 C T CSAG1 3'UTR 0.14 TCGA-BR-8486-01 X 151909337 151909337 C T CSAG1 3'UTR 0.14 TCGA-BR-8486-01 X 153173161 153173161 A T ARHGAP4 3'UTR 0.47 TCGA-BR-8486-01 X 40450529 40450529 G A ATP6AP2 Missense_Mutation p.R71H 0.14 deleterious(0.04) benign(0.176) TCGA-BR-8486-01 X 46433919 46433919 G A CHST7 Missense_Mutation p.A185T 0.24 tolerated(0.33) benign(0.004) TCGA-BR-8486-01 X 65392442 65392442 G A HEPH Splice_Site p.X192_splice 0.14 TCGA-BR-8486-01 X 91873740 91873740 G C PCDH11X Missense_Mutation p.W1282S 0.07 tolerated_low_confidence(0.18) benign(0.147) TCGA-BR-8487-01 10 101089318 101089318 G - CNNM1 Frame_Shift_Del p.G60Afs*174 0.43 TCGA-BR-8487-01 10 101163225 101163225 C T GOT1 Splice_Site p.X320_splice 0.29 TCGA-BR-8487-01 10 102306303 102306303 G - HIF1AN Frame_Shift_Del p.I289Lfs*5 0.31 TCGA-BR-8487-01 10 102748871 102748871 C T C10orf2 Missense_Mutation p.R302W 0.08 deleterious(0) possibly_damaging(0.881) TCGA-BR-8487-01 10 102748967 102748967 C T C10orf2 Nonsense_Mutation p.R334* 0.44 TCGA-BR-8487-01 10 102766799 102766799 C T LZTS2 Silent p.N628N 0.62 TCGA-BR-8487-01 10 102893992 102893992 G A TLX1 Missense_Mutation p.R210H 0.37 deleterious(0.01) probably_damaging(0.994) TCGA-BR-8487-01 10 102987022 102987022 G A LBX1 3'UTR 0.44 TCGA-BR-8487-01 10 103371152 103371152 A T FBXW4 Missense_Mutation p.S379T 0.45 tolerated(0.08) benign(0.262) TCGA-BR-8487-01 10 103432772 103432772 C T FBXW4 Missense_Mutation p.S192N 0.40 tolerated(0.2) probably_damaging(0.909) TCGA-BR-8487-01 10 104136713 104136713 G A GBF1 Missense_Mutation p.R1436H 0.49 tolerated(0.18) benign(0.03) TCGA-BR-8487-01 10 104159847 104159847 C A NFKB2 Missense_Mutation p.L494I 0.42 deleterious(0) probably_damaging(0.999) TCGA-BR-8487-01 10 104160987 104160987 C - NFKB2 Frame_Shift_Del p.P709Lfs*34 0.08 TCGA-BR-8487-01 10 104161207 104161207 T - NFKB2 Frame_Shift_Del p.V742Gfs*6 0.27 TCGA-BR-8487-01 10 104175781 104175781 G - PSD Frame_Shift_Del p.S251Afs*43 0.37 TCGA-BR-8487-01 10 104597068 104597068 C A CYP17A1 Missense_Mutation p.W17C 0.27 deleterious(0) probably_damaging(0.94) TCGA-BR-8487-01 10 105797491 105797491 G T COL17A1 Silent p.P1037P 0.47 TCGA-BR-8487-01 10 105836080 105836080 C T COL17A1 Missense_Mutation p.V104I 0.08 unknown(0) TCGA-BR-8487-01 10 111893350 111893350 A - ADD3 Frame_Shift_Del p.K701Rfs*8 0.30 TCGA-BR-8487-01 10 114911586 114911586 C A TCF7L2 Silent p.V368V 0.47 TCGA-BR-8487-01 10 1151106 1151106 C A WDR37 Silent p.T334T 0.13 TCGA-BR-8487-01 10 115887358 115887358 T C C10orf118 Missense_Mutation p.N752S 0.45 tolerated(0.85) benign(0.001) TCGA-BR-8487-01 10 116605175 116605175 C T FAM160B1 Nonsense_Mutation p.R355* 0.46 TCGA-BR-8487-01 10 118896162 118896162 C A VAX1 Missense_Mutation p.G84W 0.32 deleterious(0.01) unknown(0) TCGA-BR-8487-01 10 11998338 11998338 T C UPF2 Missense_Mutation p.D852G 0.36 deleterious(0) probably_damaging(0.912) TCGA-BR-8487-01 10 121558113 121558114 - A INPP5F Frame_Shift_Ins p.Q372Tfs*5 0.26 TCGA-BR-8487-01 10 123353340 123353340 T C FGFR2 5'UTR 0.11 TCGA-BR-8487-01 10 123970582 123970582 C - TACC2 Frame_Shift_Del p.P2216Rfs*30 0.27 TCGA-BR-8487-01 10 124608899 124608899 C T FAM24B Nonsense_Mutation p.W50* 0.47 TCGA-BR-8487-01 10 124907929 124907929 C T HMX2 Missense_Mutation p.P12L 0.10 deleterious_low_confidence(0) possibly_damaging(0.608) TCGA-BR-8487-01 10 124908149 124908149 T - HMX2 Frame_Shift_Del p.P87Lfs*84 0.24 TCGA-BR-8487-01 10 125780849 125780849 G A CHST15 Nonsense_Mutation p.Q424* 0.42 TCGA-BR-8487-01 10 126090338 126090338 C G OAT Missense_Mutation p.G324A 0.46 deleterious(0) probably_damaging(0.979) TCGA-BR-8487-01 10 127424224 127424224 C T EDRF1 Silent p.S503S 0.54 TCGA-BR-8487-01 10 127541200 127541200 C T DHX32 Silent p.P368P 0.30 TCGA-BR-8487-01 10 127677164 127677164 C T FANK1 Missense_Mutation p.T79M 0.36 deleterious(0) possibly_damaging(0.571) TCGA-BR-8487-01 10 128841408 128841408 T C DOCK1 Silent p.F706F 0.42 TCGA-BR-8487-01 10 131665498 131665498 G C EBF3 Missense_Mutation p.P307A 0.21 deleterious(0.01) benign(0.006) TCGA-BR-8487-01 10 131666125 131666125 C - EBF3 Frame_Shift_Del p.G269Vfs*6 0.20 TCGA-BR-8487-01 10 133930788 133930788 C T JAKMIP3 Missense_Mutation p.R115W 0.37 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 10 134598811 134598811 C T NKX6-2 Silent p.S184S 0.54 TCGA-BR-8487-01 10 134598905 134598905 G T NKX6-2 Missense_Mutation p.P153Q 0.57 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 10 134628224 134628224 A G TTC40 Silent p.P2405P 0.61 TCGA-BR-8487-01 10 134660807 134660807 C T TTC40 Missense_Mutation p.G1991S 0.36 tolerated(1) benign(0.001) TCGA-BR-8487-01 10 135015044 135015044 C - KNDC1 Frame_Shift_Del p.C1012Afs*29 0.28 TCGA-BR-8487-01 10 135053249 135053249 G A VENTX Missense_Mutation p.R104H 0.53 deleterious(0.03) possibly_damaging(0.877) TCGA-BR-8487-01 10 13698668 13698668 G A FRMD4A Missense_Mutation p.T974I 0.16 deleterious_low_confidence(0) benign(0.277) TCGA-BR-8487-01 10 1405277 1405277 G A ADARB2 Silent p.D341D 0.21 TCGA-BR-8487-01 10 15115238 15115238 C A OLAH 3'UTR 0.24 TCGA-BR-8487-01 10 15824188 15824188 T C FAM188A Missense_Mutation p.Y385C 0.21 deleterious(0) probably_damaging(0.997) TCGA-BR-8487-01 10 16932371 16932371 G A CUBN Silent p.S2918S 0.35 TCGA-BR-8487-01 10 17277165 17277165 C T VIM Intron 0.35 TCGA-BR-8487-01 10 21805320 21805320 G A SKIDA1 Nonsense_Mutation p.Q478* 0.28 TCGA-BR-8487-01 10 22048227 22048227 C A DNAJC1 Missense_Mutation p.A490S 0.33 tolerated(0.79) benign(0.002) TCGA-BR-8487-01 10 22208818 22208818 T - DNAJC1 Frame_Shift_Del p.K193Rfs*22 0.33 TCGA-BR-8487-01 10 23292307 23292307 T C ARMC3 Silent p.S565S 0.36 TCGA-BR-8487-01 10 23482702 23482702 A T PTF1A Missense_Mutation p.D285V 0.37 deleterious(0) unknown(0) TCGA-BR-8487-01 10 24825774 24825774 C T KIAA1217 Silent p.H1162H 0.39 TCGA-BR-8487-01 10 24889807 24889807 C - ARHGAP21 Frame_Shift_Del p.G967Vfs*29 0.20 TCGA-BR-8487-01 10 25273739 25273739 C T ENKUR Silent p.L230L 0.38 TCGA-BR-8487-01 10 25464593 25464593 G A GPR158 Missense_Mutation p.V82M 0.26 deleterious(0) possibly_damaging(0.776) TCGA-BR-8487-01 10 26385330 26385330 T - MYO3A Frame_Shift_Del p.Y530Tfs*13 0.25 TCGA-BR-8487-01 10 27687378 27687378 T C PTCHD3 Missense_Mutation p.T717A 0.26 tolerated(0.32) benign(0.01) TCGA-BR-8487-01 10 27703227 27703227 G A PTCHD3 5'UTR 0.41 TCGA-BR-8487-01 10 29760116 29760116 C - SVIL Frame_Shift_Del p.M1863Wfs*44 0.32 TCGA-BR-8487-01 10 32740643 32740643 G - CCDC7 Frame_Shift_Del p.G25Dfs*11 0.23 TCGA-BR-8487-01 10 32800715 32800715 G A CCDC7 Intron 0.33 TCGA-BR-8487-01 10 33134170 33134170 G A C10ORF68 Intron 0.31 TCGA-BR-8487-01 10 33200928 33200928 C T ITGB1 Missense_Mutation p.V532I 0.27 tolerated(0.44) benign(0.021) TCGA-BR-8487-01 10 34400290 34400290 C T PARD3 Missense_Mutation p.R1293Q 0.09 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-BR-8487-01 10 35928906 35928906 G A FZD8 Silent p.F484F 0.33 TCGA-BR-8487-01 10 38121593 38121593 A - ZNF248 Frame_Shift_Del p.F230Lfs*8 0.23 TCGA-BR-8487-01 10 42965637 42965637 G T CCNYL2 RNA 0.14 TCGA-BR-8487-01 10 43325839 43325839 C T BMS1 Missense_Mutation p.P1196L 0.39 tolerated(0.08) benign(0.338) TCGA-BR-8487-01 10 43678785 43678785 G A CSGALNACT2 Missense_Mutation p.R475Q 0.43 tolerated(0.05) benign(0.075) TCGA-BR-8487-01 10 43701396 43701396 G T RASGEF1A Missense_Mutation p.L57I 0.37 deleterious(0.05) probably_damaging(0.967) TCGA-BR-8487-01 10 46121400 46121400 A - ZFAND4 Frame_Shift_Del p.L624Cfs*8 0.14 TCGA-BR-8487-01 10 46969272 46969272 C T SYT15 Silent p.P63P 0.27 TCGA-BR-8487-01 10 48388581 48388581 C A RBP3 Missense_Mutation p.R766L 0.47 tolerated(0.1) benign(0.001) TCGA-BR-8487-01 10 49409381 49409381 G A FRMPD2 Missense_Mutation p.T615I 0.35 tolerated(0.12) benign(0.133) TCGA-BR-8487-01 10 49635188 49635188 T C MAPK8 Splice_Site p.X354_splice 0.52 TCGA-BR-8487-01 10 50530631 50530631 A G C10orf71 Missense_Mutation p.D14G 0.30 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 10 50680508 50680508 C A ERCC6 Missense_Mutation p.E946D 0.22 deleterious(0) probably_damaging(0.959) TCGA-BR-8487-01 10 50723502 50723502 A G ERCC6-PGBD3 Silent p.H1021H 0.33 TCGA-BR-8487-01 10 50947717 50947717 A G OGDHL Missense_Mutation p.M770T 0.34 deleterious(0) benign(0.107) TCGA-BR-8487-01 10 50955200 50955200 C T OGDHL Missense_Mutation p.V348I 0.37 tolerated(0.24) benign(0.009) TCGA-BR-8487-01 10 51769483 51769483 C T AGAP6 Missense_Mutation p.S533L 0.37 tolerated(0.44) benign(0.002) TCGA-BR-8487-01 10 54527917 54527917 C T MBL2 Missense_Mutation p.V243I 0.38 tolerated(0.3) benign(0.065) TCGA-BR-8487-01 10 56138546 56138546 C A PCDH15 Missense_Mutation p.R105I 0.34 deleterious(0) probably_damaging(0.999) TCGA-BR-8487-01 10 61835941 61835941 G A ANK3 Silent p.D1566D 0.40 TCGA-BR-8487-01 10 61955986 61955986 G A ANK3 Silent p.L602L 0.33 TCGA-BR-8487-01 10 62039340 62039340 G T ANK3 Missense_Mutation p.L58I 0.46 possibly_damaging(0.896) TCGA-BR-8487-01 10 64148220 64148220 G A ZNF365 Missense_Mutation p.R270Q 0.39 deleterious(0.04) possibly_damaging(0.713) TCGA-BR-8487-01 10 64573486 64573486 G T EGR2 Silent p.A304A 0.39 TCGA-BR-8487-01 10 69773784 69773784 A G HERC4 Silent p.I356I 0.48 TCGA-BR-8487-01 10 70178861 70178861 A G DNA2 Missense_Mutation p.V1052A 0.22 tolerated(0.21) probably_damaging(0.986) TCGA-BR-8487-01 10 70196956 70196956 T C DNA2 Silent p.E572E 0.44 TCGA-BR-8487-01 10 70706267 70706267 G A DDX50 Missense_Mutation p.G699S 0.40 tolerated(0.33) unknown(0) TCGA-BR-8487-01 10 71654444 71654444 A - COL13A1 Frame_Shift_Del p.G208Efs*15 0.20 TCGA-BR-8487-01 10 71902574 71902574 C A TYSND1 Missense_Mutation p.G445C 0.28 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 10 73050709 73050709 G A UNC5B Silent p.G379G 0.41 TCGA-BR-8487-01 10 73056423 73056423 A G UNC5B Missense_Mutation p.E805G 0.32 deleterious(0) possibly_damaging(0.594) TCGA-BR-8487-01 10 73574991 73574991 C T CDH23 Missense_Mutation p.R1101C 0.28 deleterious_low_confidence(0) benign(0.326) TCGA-BR-8487-01 10 73587902 73587902 C T PSAP Missense_Mutation p.V197I 0.34 tolerated(0.12) benign(0.297) TCGA-BR-8487-01 10 74884892 74884892 G A NUDT13 Missense_Mutation p.R161H 0.28 tolerated(0.12) benign(0.081) TCGA-BR-8487-01 10 75434595 75434595 G A AGAP5 Missense_Mutation p.A608V 0.33 deleterious(0.05) possibly_damaging(0.842) TCGA-BR-8487-01 10 75673437 75673438 - G PLAU Frame_Shift_Ins p.S204Lfs*25 0.28 TCGA-BR-8487-01 10 76790222 76790222 A G KAT6B Silent p.P1880P 0.37 TCGA-BR-8487-01 10 7801876 7801876 A - KIN Frame_Shift_Del p.S366Qfs*11 0.29 TCGA-BR-8487-01 10 78708947 78708947 G A KCNMA1 Missense_Mutation p.R871W 0.08 deleterious(0) probably_damaging(0.999) TCGA-BR-8487-01 10 78943226 78943226 G A KCNMA1 Missense_Mutation p.T254M 0.39 deleterious(0) possibly_damaging(0.886) TCGA-BR-8487-01 10 79567627 79567627 G A DLG5 Missense_Mutation p.R1575C 0.34 deleterious(0.02) benign(0.003) TCGA-BR-8487-01 10 79614059 79614059 C T DLG5 Silent p.L202L 0.37 TCGA-BR-8487-01 10 79793550 79793550 C T RPS24 5'UTR 0.37 TCGA-BR-8487-01 10 8100728 8100728 C - GATA3 Frame_Shift_Del p.S237Afs*29 0.29 TCGA-BR-8487-01 10 81697823 81697823 C T SFTPD Missense_Mutation p.V305I 0.40 tolerated(0.2) benign(0) TCGA-BR-8487-01 10 82040030 82040030 T G MAT1A Missense_Mutation p.M150L 0.25 tolerated(0.11) possibly_damaging(0.82) TCGA-BR-8487-01 10 83635495 83635495 C A NRG3 Silent p.S133S 0.11 TCGA-BR-8487-01 10 87484202 87484202 C T GRID1 Missense_Mutation p.V589M 0.36 tolerated(0.21) possibly_damaging(0.701) TCGA-BR-8487-01 10 875436 875436 C T LARP4B Silent p.A338A 0.42 TCGA-BR-8487-01 10 88227089 88227089 G A WAPAL Nonsense_Mutation p.R773* 0.33 TCGA-BR-8487-01 10 88702972 88702972 G A MMRN2 Silent p.D523D 0.53 TCGA-BR-8487-01 10 88911220 88911220 A - FAM35A Frame_Shift_Del p.I39Ffs*12 0.27 TCGA-BR-8487-01 10 89717672 89717672 C T PTEN Nonsense_Mutation p.R233* 0.35 TCGA-BR-8487-01 10 89720812 89720812 A - PTEN Frame_Shift_Del p.N323Mfs*21 0.08 TCGA-BR-8487-01 10 89725231 89725231 T - PTEN 3'UTR 0.42 TCGA-BR-8487-01 10 91203597 91203598 - A SLC16A12 Frame_Shift_Ins p.V74Cfs*37 0.38 TCGA-BR-8487-01 10 92680829 92680829 C T ANKRD1 5'UTR 0.44 TCGA-BR-8487-01 10 94836945 94836945 G A CYP26A1 Missense_Mutation p.A460T 0.34 tolerated(0.16) benign(0.015) TCGA-BR-8487-01 10 95157026 95157026 T - MYOF Frame_Shift_Del p.I438* 0.18 TCGA-BR-8487-01 10 95353732 95353732 C T RBP4 Missense_Mutation p.R139H 0.37 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 10 96352051 96352051 A - HELLS Frame_Shift_Del p.R614Efs*11 0.43 TCGA-BR-8487-01 10 97951623 97951623 A G BLNK 3'UTR 0.47 TCGA-BR-8487-01 10 98287018 98287018 A - TM9SF3 Frame_Shift_Del p.Y552Tfs*14 0.18 TCGA-BR-8487-01 10 98715100 98715100 A - LCOR Frame_Shift_Del p.K243Rfs*3 0.09 TCGA-BR-8487-01 10 98742990 98742990 G T C10orf12 Nonsense_Mutation p.G615* 0.36 TCGA-BR-8487-01 10 98807476 98807476 A G SLIT1 Silent p.P535P 0.21 TCGA-BR-8487-01 10 99144989 99144989 T G RRP12 Missense_Mutation p.E381A 0.08 tolerated(0.3) benign(0.001) TCGA-BR-8487-01 10 99619287 99619287 G A GOLGA7B Missense_Mutation p.D29N 0.10 tolerated(0.24) benign(0.007) TCGA-BR-8487-01 11 101359689 101359689 G A TRPC6 Silent p.Y424Y 0.29 TCGA-BR-8487-01 11 1019287 1019287 T C MUC6 Missense_Mutation p.S1340G 0.36 unknown(0) TCGA-BR-8487-01 11 1020720 1020720 G A MUC6 Missense_Mutation p.P1202S 0.42 unknown(0) TCGA-BR-8487-01 11 102195668 102195668 C T BIRC3 Missense_Mutation p.S143L 0.46 tolerated(0.56) benign(0.003) TCGA-BR-8487-01 11 1024088 1024088 A T MUC6 Missense_Mutation p.Y1081N 0.44 unknown(0) TCGA-BR-8487-01 11 102585357 102585357 C T MMP8 Missense_Mutation p.V374I 0.27 tolerated(0.14) benign(0.029) TCGA-BR-8487-01 11 1031855 1031855 A G MUC6 Missense_Mutation p.V105A 0.33 unknown(0) TCGA-BR-8487-01 11 104871014 104871014 A G CASP5 Missense_Mutation p.V322A 0.10 deleterious(0) probably_damaging(0.98) TCGA-BR-8487-01 11 104874011 104874011 T - CASP5 Frame_Shift_Del p.N191Ifs*8 0.45 TCGA-BR-8487-01 11 10776596 10776596 A - CTR9 Frame_Shift_Del p.D81Tfs*3 0.33 TCGA-BR-8487-01 11 107965658 107965658 A - CUL5 Frame_Shift_Del p.N565Ifs*18 0.18 TCGA-BR-8487-01 11 108216477 108216477 A - ATM Frame_Shift_Del p.K2811Sfs*46 0.31 TCGA-BR-8487-01 11 1087532 1087532 G A MUC2 Missense_Mutation p.V1095M 0.24 probably_damaging(1) TCGA-BR-8487-01 11 111747642 111747642 C T FDXACB1 Nonsense_Mutation p.W141* 0.50 TCGA-BR-8487-01 11 111749409 111749409 C T FDXACB1 Missense_Mutation p.C67Y 0.24 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 11 11314737 11314737 C T GALNT18 Missense_Mutation p.V506M 0.38 deleterious(0.02) possibly_damaging(0.774) TCGA-BR-8487-01 11 113614710 113614710 T A ZW10 Missense_Mutation p.D442V 0.29 tolerated(0.19) benign(0.016) TCGA-BR-8487-01 11 113934299 113934300 - A ZBTB16 Frame_Shift_Ins p.A94Sfs*8 0.24 TCGA-BR-8487-01 11 1158955 1158955 C T MUC5AC Missense_Mutation p.T378M 0.33 tolerated(0.29) benign(0.217) TCGA-BR-8487-01 11 116692257 116692257 C T APOA4 Missense_Mutation p.D173N 0.28 tolerated(0.21) benign(0.139) TCGA-BR-8487-01 11 116707727 116707727 T C APOA1 Missense_Mutation p.K64E 0.36 deleterious(0) possibly_damaging(0.701) TCGA-BR-8487-01 11 116968908 116968908 C T SIK3 Missense_Mutation p.G17D 0.16 deleterious(0) possibly_damaging(0.479) TCGA-BR-8487-01 11 117309654 117309654 G A DSCAML1 Missense_Mutation p.S1457L 0.37 deleterious(0) probably_damaging(0.915) TCGA-BR-8487-01 11 117975456 117975456 G T TMPRSS4 Missense_Mutation p.G121W 0.17 deleterious(0.01) benign(0.228) TCGA-BR-8487-01 11 118376815 118376815 C T KMT2A Missense_Mutation p.P3403L 0.36 probably_damaging(0.951) TCGA-BR-8487-01 11 118392684 118392684 C T KMT2A Missense_Mutation p.R3906C 0.38 probably_damaging(1) TCGA-BR-8487-01 11 118399370 118399370 G - TTC36 Frame_Shift_Del p.V59* 0.27 TCGA-BR-8487-01 11 118403005 118403005 C T TMEM25 Silent p.L71L 0.44 TCGA-BR-8487-01 11 119044487 119044487 C T NLRX1 Missense_Mutation p.R177C 0.42 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 11 119060239 119060239 C T PDZD3 3'UTR 0.35 TCGA-BR-8487-01 11 119213688 119213688 G - MFRP Frame_Shift_Del p.H384Tfs*94 0.44 TCGA-BR-8487-01 11 120082132 120082132 C T OAF Nonsense_Mutation p.Q49* 0.55 TCGA-BR-8487-01 11 120097608 120097608 G - OAF Frame_Shift_Del p.A152Pfs*3 0.34 TCGA-BR-8487-01 11 120350888 120350888 G A ARHGEF12 Missense_Mutation p.R1329Q 0.38 deleterious_low_confidence(0.03) possibly_damaging(0.842) TCGA-BR-8487-01 11 120856905 120856905 C T GRIK4 Missense_Mutation p.S936L 0.30 deleterious_low_confidence(0.03) benign(0.103) TCGA-BR-8487-01 11 1216434 1216434 T C MUC5AC RNA 0.35 TCGA-BR-8487-01 11 122928376 122928376 C T HSPA8 3'UTR 0.35 TCGA-BR-8487-01 11 123448200 123448200 C T GRAMD1B Missense_Mutation p.S50L 0.30 deleterious(0.02) benign(0.356) TCGA-BR-8487-01 11 123484310 123484310 G A GRAMD1B Missense_Mutation p.S581N 0.36 tolerated(0.27) probably_damaging(0.993) TCGA-BR-8487-01 11 123597198 123597198 T C ZNF202 Missense_Mutation p.D485G 0.33 deleterious(0.02) benign(0.036) TCGA-BR-8487-01 11 123886751 123886751 T C OR10G4 Missense_Mutation p.V157A 0.36 tolerated(0.06) benign(0.042) TCGA-BR-8487-01 11 124294519 124294519 A G OR8B4 Silent p.N83N 0.41 TCGA-BR-8487-01 11 124738881 124738881 G A ROBO3 Missense_Mutation p.R115H 0.64 deleterious(0) probably_damaging(0.998) TCGA-BR-8487-01 11 124789773 124789773 T C HEPN1 Missense_Mutation p.S43P 0.24 tolerated_low_confidence(0.26) benign(0.001) TCGA-BR-8487-01 11 1253994 1253994 G A MUC5B Missense_Mutation p.V687I 0.56 unknown(0) TCGA-BR-8487-01 11 1257653 1257653 C T MUC5B Missense_Mutation p.A973V 0.31 unknown(0) TCGA-BR-8487-01 11 126133660 126133660 G A SRPR 3'UTR 0.38 TCGA-BR-8487-01 11 126137069 126137069 C T SRPR Splice_Site p.X176_splice 0.18 TCGA-BR-8487-01 11 1265962 1265962 G A MUC5B Missense_Mutation p.A2618T 0.43 unknown(0) TCGA-BR-8487-01 11 128332264 128332264 C T ETS1 Missense_Mutation p.D484N 0.19 deleterious(0.01) probably_damaging(0.952) TCGA-BR-8487-01 11 128839759 128839759 G A ARHGAP32 Silent p.V1769V 0.10 TCGA-BR-8487-01 11 128843344 128843344 A - ARHGAP32 Intron 0.31 TCGA-BR-8487-01 11 130332061 130332061 G A ADAMTS15 Missense_Mutation p.M390I 0.31 deleterious(0) probably_damaging(0.998) TCGA-BR-8487-01 11 1311503 1311503 G A TOLLIP Missense_Mutation p.T107M 0.38 tolerated(0.22) possibly_damaging(0.896) TCGA-BR-8487-01 11 134253759 134253759 C T B3GAT1 Missense_Mutation p.V146M 0.19 deleterious(0.02) probably_damaging(0.962) TCGA-BR-8487-01 11 134253872 134253872 G A B3GAT1 Missense_Mutation p.T108M 0.19 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 11 1466880 1466880 C - BRSK2 Frame_Shift_Del p.R401Gfs*4 0.50 TCGA-BR-8487-01 11 15260573 15260573 G A INSC Missense_Mutation p.R496H 0.50 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 11 1605922 1605923 - C KRTAP5-1 Frame_Shift_Ins p.C187Lfs*41 0.08 TCGA-BR-8487-01 11 17743077 17743077 G A MYOD1 3'UTR 0.13 TCGA-BR-8487-01 11 17758117 17758117 C T KCNC1 Missense_Mutation p.R190W 0.69 deleterious(0) possibly_damaging(0.683) TCGA-BR-8487-01 11 18103046 18103046 G A SAAL1 Missense_Mutation p.T415M 0.45 tolerated(0.07) benign(0.033) TCGA-BR-8487-01 11 18231990 18231990 A - RP11-113D6.10 3'UTR 0.17 TCGA-BR-8487-01 11 1955032 1955032 G A TNNT3 Missense_Mutation p.E85K 0.42 deleterious(0) probably_damaging(0.966) TCGA-BR-8487-01 11 199980 199980 T C ODF3 Missense_Mutation p.F238L 0.55 deleterious(0) probably_damaging(0.996) TCGA-BR-8487-01 11 2418196 2418196 T C CD81 3'UTR 0.47 TCGA-BR-8487-01 11 24750763 24750763 G A LUZP2 Silent p.E37E 0.34 TCGA-BR-8487-01 11 251578 251578 A G PSMD13 Silent p.Q292Q 0.34 TCGA-BR-8487-01 11 26587274 26587274 A T MUC15 Missense_Mutation p.N71K 0.38 tolerated_low_confidence(0.17) possibly_damaging(0.859) TCGA-BR-8487-01 11 27523455 27523455 G A LIN7C Missense_Mutation p.A17V 0.45 tolerated_low_confidence(0.1) benign(0.022) TCGA-BR-8487-01 11 27679877 27679877 G A BDNF Missense_Mutation p.P161S 0.09 tolerated(0.2) probably_damaging(0.986) TCGA-BR-8487-01 11 279866 279866 G A NLRP6 Missense_Mutation p.V115M 0.26 tolerated(0.07) benign(0.337) TCGA-BR-8487-01 11 3040468 3040468 C A CARS Silent p.S432S 0.37 TCGA-BR-8487-01 11 32623875 32623875 A G EIF3M Missense_Mutation p.D352G 0.47 tolerated(0.09) benign(0.008) TCGA-BR-8487-01 11 32956107 32956107 A G QSER1 Silent p.Q972Q 0.11 TCGA-BR-8487-01 11 33108546 33108546 G A CSTF3 Nonsense_Mutation p.R595* 0.35 TCGA-BR-8487-01 11 33640107 33640107 A G KIAA1549L Missense_Mutation p.S1473G 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8487-01 11 34493032 34493032 C T CAT 3'UTR 0.33 TCGA-BR-8487-01 11 3687434 3687434 C A CHRNA10 Missense_Mutation p.W419L 0.47 deleterious(0) probably_damaging(0.999) TCGA-BR-8487-01 11 3733667 3733667 G A NUP98 Intron 0.44 TCGA-BR-8487-01 11 3744675 3744675 G T NUP98 Missense_Mutation p.L620I 0.32 tolerated(0.28) probably_damaging(0.995) TCGA-BR-8487-01 11 3838582 3838582 G T PGAP2 Splice_Site p.X56_splice 0.38 TCGA-BR-8487-01 11 3846609 3846609 C T PGAP2 Missense_Mutation p.A290V 0.33 deleterious(0) benign(0.327) TCGA-BR-8487-01 11 43283606 43283607 AA - HNRNPKP3 RNA 0.86 TCGA-BR-8487-01 11 43428962 43428962 A G TTC17 Silent p.G633G 0.44 TCGA-BR-8487-01 11 43876274 43876274 C T HSD17B12 Missense_Mutation p.P232S 0.32 deleterious(0) probably_damaging(0.978) TCGA-BR-8487-01 11 44105022 44105022 T - ACCS Frame_Shift_Del p.L436Wfs*92 0.10 TCGA-BR-8487-01 11 45832837 45832837 C T SLC35C1 Missense_Mutation p.P349L 0.39 tolerated(0.62) benign(0.001) TCGA-BR-8487-01 11 45891725 45891725 G A CRY2 Missense_Mutation p.R460H 0.42 deleterious(0) probably_damaging(0.953) TCGA-BR-8487-01 11 45948373 45948373 C - GYLTL1B Frame_Shift_Del p.R428Gfs*30 0.32 TCGA-BR-8487-01 11 46567255 46567255 C T AMBRA1 Silent p.Q150Q 0.33 TCGA-BR-8487-01 11 46681011 46681012 TT - ATG13 Frame_Shift_Del p.S257Hfs*58 0.22 TCGA-BR-8487-01 11 46920202 46920202 C - LRP4 Frame_Shift_Del p.E235Sfs*162 0.23 TCGA-BR-8487-01 11 4703475 4703475 A - OR51E2 Frame_Shift_Del p.F156Sfs*6 0.40 TCGA-BR-8487-01 11 47196629 47196629 A G ARFGAP2 Silent p.S139S 0.33 TCGA-BR-8487-01 11 47196853 47196853 A - ARFGAP2 Frame_Shift_Del p.R93Afs*43 0.37 TCGA-BR-8487-01 11 47317472 47317472 C A MADD Missense_Mutation p.L1209I 0.20 deleterious(0.04) probably_damaging(0.997) TCGA-BR-8487-01 11 47593160 47593160 T G PTPMT1 Silent p.T195T 0.28 TCGA-BR-8487-01 11 47664026 47664026 C A MTCH2 5'UTR 0.38 TCGA-BR-8487-01 11 47689211 47689211 T - AGBL2 Frame_Shift_Del p.K751Rfs*19 0.47 TCGA-BR-8487-01 11 47746087 47746087 G - FNBP4 Frame_Shift_Del p.P751Lfs*11 0.27 TCGA-BR-8487-01 11 47776158 47776158 G A FNBP4 Silent p.S124S 0.25 TCGA-BR-8487-01 11 48188902 48188902 T C PTPRJ Silent p.G1334G 0.34 TCGA-BR-8487-01 11 50003277 50003277 A G OR4C12 Missense_Mutation p.F254S 0.10 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BR-8487-01 11 5411436 5411436 C A OR51M1 Missense_Mutation p.L270M 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-BR-8487-01 11 5537100 5537100 A G UBQLNL Missense_Mutation p.M191T 0.29 deleterious(0.02) benign(0.216) TCGA-BR-8487-01 11 55798109 55798109 G A OR5AS1 Missense_Mutation p.S72N 0.40 deleterious(0.01) benign(0.354) TCGA-BR-8487-01 11 558069 558069 G - C11orf35 Intron 0.30 TCGA-BR-8487-01 11 55905191 55905191 C A OR8J3 Missense_Mutation p.A2S 0.32 tolerated(0.14) benign(0.297) TCGA-BR-8487-01 11 56057608 56057608 T G OR8H1 Silent p.R311R 0.14 TCGA-BR-8487-01 11 56057978 56057978 G T OR8H1 Silent p.S187S 0.42 TCGA-BR-8487-01 11 56237709 56237709 T - OR5M3 Frame_Shift_Del p.T89Qfs*8 0.25 TCGA-BR-8487-01 11 56258665 56258665 A - OR5M8 Frame_Shift_Del p.F61Sfs*2 0.25 TCGA-BR-8487-01 11 56949609 56949610 - C LRRC55 Frame_Shift_Ins p.V83Rfs*7 0.28 TCGA-BR-8487-01 11 57116158 57116158 C - P2RX3 Frame_Shift_Del p.L183Sfs*13 0.28 TCGA-BR-8487-01 11 57147109 57147109 G A PRG3 Missense_Mutation p.A78V 0.34 tolerated(0.05) benign(0.223) TCGA-BR-8487-01 11 57235267 57235267 C T RTN4RL2 Missense_Mutation p.R73C 0.08 tolerated(0.05) possibly_damaging(0.901) TCGA-BR-8487-01 11 58892109 58892109 A G FAM111B Missense_Mutation p.N180S 0.52 tolerated(0.25) benign(0.165) TCGA-BR-8487-01 11 58919526 58919526 C T FAM111A Missense_Mutation p.R129C 0.33 tolerated(0.24) benign(0.001) TCGA-BR-8487-01 11 60543266 60543266 A G MS4A15 3'UTR 0.35 TCGA-BR-8487-01 11 60670961 60670961 C T PRPF19 Silent p.P72P 0.41 TCGA-BR-8487-01 11 607923 607923 A G PHRF1 Missense_Mutation p.K822E 0.28 deleterious(0.04) probably_damaging(0.959) TCGA-BR-8487-01 11 61048617 61048617 C A VWCE Missense_Mutation p.R293L 0.38 tolerated(0.2) benign(0.018) TCGA-BR-8487-01 11 61070548 61070548 G A DDB1 Missense_Mutation p.A971V 0.36 tolerated(0.34) benign(0.188) TCGA-BR-8487-01 11 61133581 61133581 G A TMEM138 Missense_Mutation p.V65I 0.37 tolerated(0.34) benign(0.018) TCGA-BR-8487-01 11 61908981 61908981 G A INCENP Missense_Mutation p.V535I 0.07 deleterious(0.01) unknown(0) TCGA-BR-8487-01 11 62298496 62298496 C T AHNAK Missense_Mutation p.M1131I 0.25 probably_damaging(0.98) TCGA-BR-8487-01 11 6232359 6232359 C T C11orf42 3'UTR 0.29 TCGA-BR-8487-01 11 62348927 62348927 C T TUT1 Missense_Mutation p.E212K 0.44 deleterious(0.04) benign(0.284) TCGA-BR-8487-01 11 62415761 62415761 C T INTS5 Silent p.A597A 0.33 TCGA-BR-8487-01 11 62445429 62445429 C T UBXN1 Missense_Mutation p.R151Q 0.33 deleterious(0.04) benign(0.094) TCGA-BR-8487-01 11 6245178 6245178 G A FAM160A2 Missense_Mutation p.R147W 0.45 deleterious(0) possibly_damaging(0.736) TCGA-BR-8487-01 11 62455850 62455850 G A LRRN4CL Missense_Mutation p.P44L 0.39 tolerated(0.34) benign(0.001) TCGA-BR-8487-01 11 62502877 62502877 G A TTC9C Missense_Mutation p.V88M 0.38 deleterious(0) possibly_damaging(0.714) TCGA-BR-8487-01 11 62656124 62656124 C T SLC3A2 Missense_Mutation p.P619S 0.30 deleterious(0.05) possibly_damaging(0.475) TCGA-BR-8487-01 11 63283775 63283775 G - LGALS12 Frame_Shift_Del p.A310Pfs*4 0.29 TCGA-BR-8487-01 11 6340490 6340490 G T PRKCDBP Missense_Mutation p.P230H 0.53 deleterious_low_confidence(0.02) benign(0.326) TCGA-BR-8487-01 11 63670157 63670157 A G MARK2 Missense_Mutation p.D440G 0.39 tolerated(0.45) possibly_damaging(0.574) TCGA-BR-8487-01 11 63764119 63764119 C T OTUB1 Missense_Mutation p.R113W 0.40 deleterious(0) probably_damaging(0.994) TCGA-BR-8487-01 11 64056562 64056562 C T GPR137 Intron 0.45 TCGA-BR-8487-01 11 64088505 64088505 G A PRDX5 Silent p.S168S 0.40 TCGA-BR-8487-01 11 64120317 64120317 G A CCDC88B Missense_Mutation p.G1153D 0.23 tolerated(0.23) benign(0.194) TCGA-BR-8487-01 11 64121481 64121481 G A CCDC88B Missense_Mutation p.G1313D 0.39 deleterious(0.01) probably_damaging(0.997) TCGA-BR-8487-01 11 64132922 64132922 C - RPS6KA4 Frame_Shift_Del p.R354Efs*21 0.10 TCGA-BR-8487-01 11 64374787 64374787 G A NRXN2 Nonsense_Mutation p.R1674* 0.40 TCGA-BR-8487-01 11 64375286 64375286 G - NRXN2 Frame_Shift_Del p.T1508Rfs*58 0.15 TCGA-BR-8487-01 11 64520597 64520597 G - PYGM Frame_Shift_Del p.P489Lfs*50 0.26 TCGA-BR-8487-01 11 64521114 64521114 C T PYGM Missense_Mutation p.R427Q 0.14 tolerated(0.15) benign(0.005) TCGA-BR-8487-01 11 64597244 64597244 C T CDC42BPG Silent p.L1222L 0.45 TCGA-BR-8487-01 11 64878874 64878874 C T VPS51 Missense_Mutation p.R722C 0.51 deleterious(0) probably_damaging(0.987) TCGA-BR-8487-01 11 64900466 64900466 C T SYVN1 Missense_Mutation p.R102H 0.42 deleterious(0) possibly_damaging(0.835) TCGA-BR-8487-01 11 64977871 64977871 G A CAPN1 Silent p.A669A 0.40 TCGA-BR-8487-01 11 64981838 64981838 G A CAPN1 3'Flank 0.26 TCGA-BR-8487-01 11 65144465 65144465 G - SLC25A45 Frame_Shift_Del p.P141Hfs*30 0.34 TCGA-BR-8487-01 11 65178811 65178811 G A FRMD8 Missense_Mutation p.D459N 0.52 deleterious_low_confidence(0.04) benign(0.32) TCGA-BR-8487-01 11 65315489 65315489 T C LTBP3 Missense_Mutation p.N583S 0.41 tolerated(0.07) benign(0.223) TCGA-BR-8487-01 11 65387251 65387251 G A PCNXL3 Missense_Mutation p.R619Q 0.36 tolerated(0.45) benign(0.055) TCGA-BR-8487-01 11 65403889 65403889 G A PCNXL3 Missense_Mutation p.G1874D 0.35 deleterious(0.02) possibly_damaging(0.637) TCGA-BR-8487-01 11 65414977 65414977 G C SIPA1 Missense_Mutation p.E718D 0.24 tolerated(0.96) probably_damaging(0.995) TCGA-BR-8487-01 11 65429435 65429435 A G RELA Silent p.D53D 0.42 TCGA-BR-8487-01 11 65631120 65631120 A G MUS81 Missense_Mutation p.T297A 0.47 tolerated(0.77) benign(0.005) TCGA-BR-8487-01 11 65650873 65650873 G - CTSW Frame_Shift_Del p.A335Pfs*34 0.29 TCGA-BR-8487-01 11 65651477 65651477 G A FIBP Missense_Mutation p.R355C 0.19 tolerated(0.1) benign(0.003) TCGA-BR-8487-01 11 65714876 65714876 C - TSGA10IP RNA 0.17 TCGA-BR-8487-01 11 65810429 65810429 G A GAL3ST3 Missense_Mutation p.A282V 0.60 tolerated(0.24) benign(0.002) TCGA-BR-8487-01 11 66033664 66033664 C - KLC2 Frame_Shift_Del p.Q570Rfs*8 0.25 TCGA-BR-8487-01 11 66102301 66102301 C T RIN1 Silent p.E323E 0.38 TCGA-BR-8487-01 11 66260252 66260252 C T DPP3 Nonsense_Mutation p.Q352* 0.41 TCGA-BR-8487-01 11 6632036 6632036 C T ILK 3'UTR 0.40 TCGA-BR-8487-01 11 6636152 6636152 G - TPP1 Frame_Shift_Del p.P499Lfs*20 0.28 TCGA-BR-8487-01 11 66460053 66460053 A G SPTBN2 Missense_Mutation p.V1715A 0.35 deleterious(0.04) probably_damaging(0.986) TCGA-BR-8487-01 11 6648096 6648096 C T DCHS1 Silent p.L2058L 0.45 TCGA-BR-8487-01 11 66617168 66617168 T C PC Missense_Mutation p.K1021E 0.29 tolerated(0.67) benign(0.009) TCGA-BR-8487-01 11 66617432 66617432 C - PC Frame_Shift_Del p.F959Sfs*10 0.31 TCGA-BR-8487-01 11 66627324 66627324 G - LRFN4 Frame_Shift_Del p.G524Vfs*100 0.26 TCGA-BR-8487-01 11 67018208 67018208 C T KDM2A Missense_Mutation p.R903C 0.09 deleterious(0.01) probably_damaging(0.959) TCGA-BR-8487-01 11 67022389 67022389 A G KDM2A Missense_Mutation p.I1118V 0.39 tolerated(0.08) benign(0.107) TCGA-BR-8487-01 11 67077245 67077245 G T SSH3 Missense_Mutation p.Q405H 0.09 tolerated(0.12) probably_damaging(0.984) TCGA-BR-8487-01 11 67172910 67172910 G A TBC1D10C Missense_Mutation p.R98H 0.17 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 11 67232302 67232302 C T TMEM134 Silent p.V159V 0.43 TCGA-BR-8487-01 11 68115579 68115579 G A LRP5 Missense_Mutation p.G119D 0.42 deleterious(0.02) probably_damaging(0.992) TCGA-BR-8487-01 11 68177424 68177424 G A LRP5 Missense_Mutation p.V712M 0.47 deleterious(0) probably_damaging(0.992) TCGA-BR-8487-01 11 68192762 68192762 T C LRP5 Splice_Site p.X1143_splice 0.33 TCGA-BR-8487-01 11 68506100 68506100 C T MTL5 Intron 0.46 TCGA-BR-8487-01 11 6913347 6913347 G A OR2D2 Missense_Mutation p.P129S 0.38 deleterious(0) probably_damaging(0.993) TCGA-BR-8487-01 11 71720111 71720111 G A NUMA1 Missense_Mutation p.R1654W 0.45 probably_damaging(1) TCGA-BR-8487-01 11 72145511 72145511 C A CLPB Missense_Mutation p.G3V 0.14 deleterious_low_confidence(0.01) unknown(0) TCGA-BR-8487-01 11 72404824 72404824 C T ARAP1 Missense_Mutation p.V1241M 0.22 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 11 72422546 72422546 T C ARAP1 Splice_Site p.X341_splice 0.21 TCGA-BR-8487-01 11 72598525 72598525 C T FCHSD2 Missense_Mutation p.R379H 0.39 deleterious(0) probably_damaging(0.977) TCGA-BR-8487-01 11 73103367 73103367 C T RELT Missense_Mutation p.A160V 0.35 deleterious(0.01) probably_damaging(0.998) TCGA-BR-8487-01 11 73625524 73625524 G A PAAF1 Missense_Mutation p.C265Y 0.46 deleterious(0.02) benign(0.188) TCGA-BR-8487-01 11 73829364 73829364 T - C2CD3 Frame_Shift_Del p.I477* 0.36 TCGA-BR-8487-01 11 74336575 74336575 A - POLD3 Frame_Shift_Del p.A288Qfs*17 0.28 TCGA-BR-8487-01 11 74413990 74413990 G A CHRDL2 Silent p.H323H 0.40 TCGA-BR-8487-01 11 74554379 74554379 G A XRRA1 Missense_Mutation p.R749C 0.46 deleterious(0) probably_damaging(0.931) TCGA-BR-8487-01 11 76371220 76371220 G T LRRC32 Missense_Mutation p.L473I 0.17 tolerated(0.05) possibly_damaging(0.505) TCGA-BR-8487-01 11 76751188 76751188 C T B3GNT6 Missense_Mutation p.T198M 0.33 deleterious(0) probably_damaging(0.949) TCGA-BR-8487-01 11 76910689 76910689 T C MYO7A Missense_Mutation p.C1560R 0.26 tolerated(0.4) benign(0.003) TCGA-BR-8487-01 11 77930333 77930333 C A GAB2 Missense_Mutation p.K672N 0.27 deleterious(0.02) probably_damaging(0.974) TCGA-BR-8487-01 11 77937549 77937549 T C GAB2 Missense_Mutation p.N390S 0.42 deleterious(0) possibly_damaging(0.76) TCGA-BR-8487-01 11 78467902 78467902 C T TENM4 Missense_Mutation p.V902M 0.36 deleterious(0.02) benign(0.25) TCGA-BR-8487-01 11 792206 792206 G A SLC25A22 Missense_Mutation p.R252W 0.50 deleterious(0) probably_damaging(0.999) TCGA-BR-8487-01 11 7949288 7949288 G A OR10A6 Nonsense_Mutation p.R308* 0.42 TCGA-BR-8487-01 11 7949596 7949596 A - OR10A6 Frame_Shift_Del p.L205* 0.14 TCGA-BR-8487-01 11 824014 824014 C T PNPLA2 Silent p.C312C 0.42 TCGA-BR-8487-01 11 82644065 82644065 C T C11orf82 Missense_Mutation p.S562L 0.50 tolerated(0.44) benign(0) TCGA-BR-8487-01 11 840287 840287 C G POLR2L 3'UTR 0.09 TCGA-BR-8487-01 11 85445464 85445464 G T SYTL2 Missense_Mutation p.P302H 0.10 deleterious(0) possibly_damaging(0.841) TCGA-BR-8487-01 11 86133683 86133683 C T CCDC81 Missense_Mutation p.R629C 0.34 deleterious(0.03) benign(0.092) TCGA-BR-8487-01 11 86782632 86782632 G A TMEM135 Missense_Mutation p.A113T 0.37 deleterious(0) probably_damaging(0.995) TCGA-BR-8487-01 11 87025590 87025590 G A TMEM135 Splice_Site p.X359_splice 0.38 TCGA-BR-8487-01 11 8751578 8751578 G T ST5 Missense_Mutation p.P420H 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8487-01 11 9111333 9111333 G A SCUBE2 Silent p.D59D 0.35 TCGA-BR-8487-01 11 92590423 92590423 G A FAT3 Silent p.P3803P 0.32 TCGA-BR-8487-01 11 94326792 94326792 C T PIWIL4 Missense_Mutation p.L379F 0.11 tolerated(0.07) probably_damaging(0.956) TCGA-BR-8487-01 11 970290 970290 C T AP2A2 Silent p.N86N 0.38 TCGA-BR-8487-01 11 9771475 9771476 AG - SWAP70 Frame_Shift_Del p.K576Efs*48 0.24 TCGA-BR-8487-01 11 99715605 99715605 T - CNTN5 Frame_Shift_Del p.F101Lfs*19 0.18 TCGA-BR-8487-01 11 99932040 99932040 A G CNTN5 Silent p.V359V 0.44 TCGA-BR-8487-01 12 105151236 105151236 G T CHST11 Missense_Mutation p.E238D 0.23 tolerated(0.31) benign(0.013) TCGA-BR-8487-01 12 10532376 10532376 A - KLRK1 Frame_Shift_Del p.F55Sfs*7 0.38 TCGA-BR-8487-01 12 106708177 106708177 G C TCP11L2 Missense_Mutation p.A67P 0.37 deleterious(0.05) possibly_damaging(0.655) TCGA-BR-8487-01 12 107937778 107937778 C - BTBD11 Frame_Shift_Del p.L453Cfs*53 0.37 TCGA-BR-8487-01 12 108091273 108091273 C A PWP1 Missense_Mutation p.P215T 0.28 deleterious(0) possibly_damaging(0.829) TCGA-BR-8487-01 12 109041035 109041035 C T CORO1C 3'UTR 0.43 TCGA-BR-8487-01 12 109527862 109527862 T C ALKBH2 Missense_Mutation p.H144R 0.23 tolerated(0.92) benign(0) TCGA-BR-8487-01 12 109940840 109940840 G A UBE3B Missense_Mutation p.R432H 0.31 deleterious(0.02) benign(0.022) TCGA-BR-8487-01 12 110206268 110206268 C T FAM222A Silent p.A178A 0.53 TCGA-BR-8487-01 12 110461861 110461861 G A ANKRD13A Missense_Mutation p.G249R 0.07 deleterious(0) probably_damaging(0.967) TCGA-BR-8487-01 12 111701597 111701597 G A CUX2 Silent p.A85A 0.07 TCGA-BR-8487-01 12 111731284 111731284 G A CUX2 Silent p.T157T 0.29 TCGA-BR-8487-01 12 111758570 111758570 C T CUX2 Silent p.F919F 0.50 TCGA-BR-8487-01 12 111801244 111801244 G A FAM109A Silent p.P9P 0.23 TCGA-BR-8487-01 12 112182702 112182702 A G ACAD10 Missense_Mutation p.E688G 0.30 tolerated(0.05) benign(0.015) TCGA-BR-8487-01 12 112499109 112499109 C T NAA25 Silent p.L411L 0.41 TCGA-BR-8487-01 12 112926270 112926270 C T PTPN11 Missense_Mutation p.T468M 0.50 deleterious(0) probably_damaging(0.941) TCGA-BR-8487-01 12 113534522 113534522 G A DTX1 Silent p.V547V 0.34 TCGA-BR-8487-01 12 113541993 113541993 C T RASAL1 Silent p.A648A 0.37 TCGA-BR-8487-01 12 113557016 113557016 G A RASAL1 Missense_Mutation p.R187W 0.40 deleterious(0.01) benign(0.008) TCGA-BR-8487-01 12 1137146 1137146 G A ERC1 Missense_Mutation p.R26H 0.35 deleterious(0) probably_damaging(0.992) TCGA-BR-8487-01 12 1137661 1137661 C T ERC1 Nonsense_Mutation p.R198* 0.49 TCGA-BR-8487-01 12 11421601 11421601 A G PRB3 Silent p.D22D 0.20 TCGA-BR-8487-01 12 116457653 116457653 T - MED13L Frame_Shift_Del p.E251Kfs*21 0.28 TCGA-BR-8487-01 12 11803022 11803022 A - ETV6 5'UTR 0.29 TCGA-BR-8487-01 12 120159173 120159173 G A CIT Missense_Mutation p.R1225W 0.37 deleterious(0) possibly_damaging(0.794) TCGA-BR-8487-01 12 120635184 120635184 A G RPLP0 Missense_Mutation p.Y245H 0.38 deleterious(0) possibly_damaging(0.76) TCGA-BR-8487-01 12 121958832 121958832 C T KDM2B Missense_Mutation p.V335M 0.28 deleterious(0) possibly_damaging(0.46) TCGA-BR-8487-01 12 122199614 122199614 G A TMEM120B Missense_Mutation p.R174Q 0.33 deleterious(0) probably_damaging(0.944) TCGA-BR-8487-01 12 122217517 122217517 C T RHOF Missense_Mutation p.A175T 0.31 deleterious(0) probably_damaging(0.999) TCGA-BR-8487-01 12 122667782 122667782 G A LRRC43 Missense_Mutation p.V31M 0.28 tolerated(0.1) possibly_damaging(0.829) TCGA-BR-8487-01 12 122685346 122685346 C - LRRC43 Frame_Shift_Del p.I561Sfs*10 0.29 TCGA-BR-8487-01 12 122691190 122691190 T C B3GNT4 Missense_Mutation p.V131A 0.37 tolerated(0.52) benign(0.123) TCGA-BR-8487-01 12 123052858 123052858 T - KNTC1 Frame_Shift_Del p.L554Yfs*3 0.22 TCGA-BR-8487-01 12 123467067 123467068 AC - ARL6IP4 Frame_Shift_Del p.H337Qfs*51 0.26 TCGA-BR-8487-01 12 123694679 123694679 T A MPHOSPH9 Missense_Mutation p.D221V 0.44 deleterious(0) probably_damaging(0.921) TCGA-BR-8487-01 12 123741526 123741526 A - C12orf65 Frame_Shift_Del p.K152Rfs*24 0.10 TCGA-BR-8487-01 12 123950525 123950525 A - SNRNP35 Frame_Shift_Del p.K153Rfs*6 0.26 TCGA-BR-8487-01 12 124111624 124111624 A G EIF2B1 Missense_Mutation p.V150A 0.37 tolerated(0.06) probably_damaging(0.998) TCGA-BR-8487-01 12 124305130 124305130 T C DNAH10 Missense_Mutation p.V1217A 0.09 benign(0.01) TCGA-BR-8487-01 12 124422299 124422299 T C CCDC92 Missense_Mutation p.E101G 0.08 tolerated(0.06) probably_damaging(0.999) TCGA-BR-8487-01 12 124821387 124821387 C T NCOR2 Silent p.P2009P 0.50 TCGA-BR-8487-01 12 12483571 12483571 G A MANSC1 Missense_Mutation p.T229M 0.37 deleterious(0.03) benign(0.074) TCGA-BR-8487-01 12 125432497 125432497 G A DHX37 Intron 0.45 TCGA-BR-8487-01 12 125613957 125613957 C T AACS Silent p.N500N 0.36 TCGA-BR-8487-01 12 12938569 12938569 G A APOLD1 Intron 0.33 TCGA-BR-8487-01 12 12940507 12940507 G A APOLD1 Missense_Mutation p.R254Q 0.46 deleterious_low_confidence(0) benign(0.123) TCGA-BR-8487-01 12 130647923 130647923 C A FZD10 Missense_Mutation p.L146M 0.24 tolerated(0.52) probably_damaging(0.999) TCGA-BR-8487-01 12 130935800 130935800 C T RIMBP2 Silent p.L131L 0.42 TCGA-BR-8487-01 12 132210036 132210036 G T SFSWAP Missense_Mutation p.K231N 0.33 deleterious(0) probably_damaging(0.967) TCGA-BR-8487-01 12 132529956 132529956 C T EP400 Missense_Mutation p.R2293C 0.26 unknown(0) TCGA-BR-8487-01 12 132624667 132624668 - G DDX51 Frame_Shift_Ins p.Q584Pfs*40 0.19 TCGA-BR-8487-01 12 132681542 132681542 C T GALNT9 3'UTR 0.41 TCGA-BR-8487-01 12 133219828 133219828 G A POLE Silent p.S1511S 0.32 TCGA-BR-8487-01 12 13717534 13717534 G A GRIN2B Missense_Mutation p.R880C 0.41 deleterious(0) possibly_damaging(0.867) TCGA-BR-8487-01 12 14976431 14976431 T C C12orf60 Silent p.L188L 0.36 TCGA-BR-8487-01 12 15704534 15704534 T C PTPRO Silent p.L829L 0.50 TCGA-BR-8487-01 12 16516861 16516861 C A MGST1 Silent p.T118T 0.30 TCGA-BR-8487-01 12 21644547 21644547 T - RECQL Frame_Shift_Del p.V41Sfs*2 0.41 TCGA-BR-8487-01 12 22826494 22826494 G A ETNK1 Missense_Mutation p.R371H 0.34 tolerated(0.09) benign(0.011) TCGA-BR-8487-01 12 2622118 2622118 A G CACNA1C Missense_Mutation p.D453G 0.39 tolerated(0.27) benign(0.024) TCGA-BR-8487-01 12 26568292 26568292 A - ITPR2 Frame_Shift_Del p.L2417* 0.29 TCGA-BR-8487-01 12 26639255 26639255 C A ITPR2 Missense_Mutation p.G1865W 0.40 deleterious(0) benign(0.438) TCGA-BR-8487-01 12 27467586 27467586 G A STK38L Missense_Mutation p.A223T 0.47 tolerated(0.1) benign(0.047) TCGA-BR-8487-01 12 27908478 27908478 T - MRPS35 3'UTR 0.35 TCGA-BR-8487-01 12 29474809 29474809 G A FAR2 Silent p.T403T 0.42 TCGA-BR-8487-01 12 2973658 2973658 C T FOXM1 Missense_Mutation p.R365Q 0.41 deleterious(0.02) possibly_damaging(0.622) TCGA-BR-8487-01 12 3040387 3040387 A - TULP3 Frame_Shift_Del p.E228Kfs*61 0.16 TCGA-BR-8487-01 12 30881696 30881696 T - CAPRIN2 Frame_Shift_Del p.K556Nfs*4 0.09 TCGA-BR-8487-01 12 32137913 32137913 C T KIAA1551 Missense_Mutation p.P1342S 0.38 tolerated(0.45) benign(0.001) TCGA-BR-8487-01 12 32490722 32490722 C T BICD1 Missense_Mutation p.R848W 0.42 deleterious_low_confidence(0.02) benign(0.306) TCGA-BR-8487-01 12 40653408 40653408 T C LRRK2 Splice_Site p.X515_splice 0.42 TCGA-BR-8487-01 12 40699624 40699624 C T LRRK2 Missense_Mutation p.S1272F 0.15 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 12 41312552 41312552 C T CNTN1 Missense_Mutation p.A69V 0.36 deleterious(0) possibly_damaging(0.9) TCGA-BR-8487-01 12 42853839 42853839 G A PRICKLE1 Silent p.G756G 0.38 TCGA-BR-8487-01 12 44915860 44915860 A G NELL2 Missense_Mutation p.C750R 0.29 deleterious(0) probably_damaging(0.998) TCGA-BR-8487-01 12 4554487 4554487 G A FGF6 Missense_Mutation p.R84W 0.24 deleterious(0.02) benign(0.026) TCGA-BR-8487-01 12 46321969 46321969 C T SCAF11 Silent p.L505L 0.33 TCGA-BR-8487-01 12 4735743 4735743 G A AKAP3 Silent p.A775A 0.39 TCGA-BR-8487-01 12 4737134 4737134 T C AKAP3 Missense_Mutation p.T312A 0.46 tolerated(0.16) probably_damaging(0.999) TCGA-BR-8487-01 12 48181527 48181527 G - HDAC7 Frame_Shift_Del p.M808Wfs*12 0.15 TCGA-BR-8487-01 12 4829850 4829850 T - GALNT8 Frame_Shift_Del p.W4Gfs*12 0.27 TCGA-BR-8487-01 12 49089559 49089559 G A CCNT1 Missense_Mutation p.R254C 0.35 deleterious(0) possibly_damaging(0.855) TCGA-BR-8487-01 12 49412461 49412461 G - PRKAG1 Intron 0.34 TCGA-BR-8487-01 12 49416123 49416123 T C KMT2D Missense_Mutation p.Y5451C 0.30 benign(0.126) TCGA-BR-8487-01 12 49420024 49420024 A G KMT2D Missense_Mutation p.V5242A 0.30 unknown(0) TCGA-BR-8487-01 12 49434492 49434492 G - KMT2D Frame_Shift_Del p.P2354Lfs*30 0.22 TCGA-BR-8487-01 12 49690795 49690795 G A PRPH Missense_Mutation p.A276T 0.19 deleterious(0.01) probably_damaging(0.972) TCGA-BR-8487-01 12 49933274 49933274 G A KCNH3 Silent p.T25T 0.53 TCGA-BR-8487-01 12 49953005 49953005 C T MCRS1 Missense_Mutation p.R402Q 0.09 deleterious(0.03) probably_damaging(0.95) TCGA-BR-8487-01 12 49994809 49994809 A G FAM186B Missense_Mutation p.M205T 0.27 tolerated(1) benign(0) TCGA-BR-8487-01 12 5020649 5020649 C T KCNA1 Silent p.C35C 0.45 TCGA-BR-8487-01 12 5021254 5021254 T C KCNA1 Missense_Mutation p.V237A 0.47 tolerated(0.08) benign(0.314) TCGA-BR-8487-01 12 5021268 5021268 G A KCNA1 Missense_Mutation p.A242T 0.45 tolerated(0.05) possibly_damaging(0.502) TCGA-BR-8487-01 12 51122352 51122352 G A DIP2B Missense_Mutation p.A1178T 0.32 tolerated(0.12) benign(0.096) TCGA-BR-8487-01 12 52100214 52100214 G A SCN8A Silent p.A450A 0.43 TCGA-BR-8487-01 12 52115620 52115620 G A SCN8A Silent p.T642T 0.43 TCGA-BR-8487-01 12 52776272 52776272 G A KRT84 Silent p.N287N 0.45 TCGA-BR-8487-01 12 52818457 52818457 G A KRT75 Silent p.S500S 0.27 TCGA-BR-8487-01 12 52886601 52886601 G C KRT6A Silent p.G124G 0.40 TCGA-BR-8487-01 12 52911681 52911681 C T KRT5 Silent p.A309A 0.48 TCGA-BR-8487-01 12 53074157 53074157 A G KRT1 5'UTR 0.28 TCGA-BR-8487-01 12 53462055 53462055 C T SPRYD3 Missense_Mutation p.V243M 0.38 tolerated(0.54) benign(0.003) TCGA-BR-8487-01 12 53702980 53702980 C T AAAS Missense_Mutation p.G299D 0.09 deleterious(0) probably_damaging(0.988) TCGA-BR-8487-01 12 53849156 53849156 T C PCBP2 Splice_Site p.X31_splice 0.33 TCGA-BR-8487-01 12 54070026 54070026 C A ATP5G2 5'UTR 0.38 TCGA-BR-8487-01 12 54757553 54757553 A - GPR84 Frame_Shift_Del p.V28Gfs*5 0.11 TCGA-BR-8487-01 12 54913106 54913106 T C NCKAP1L Missense_Mutation p.S539P 0.34 deleterious(0) probably_damaging(0.998) TCGA-BR-8487-01 12 55524393 55524393 T - OR9K2 Frame_Shift_Del p.F282Lfs*12 0.28 TCGA-BR-8487-01 12 55641456 55641456 C T OR6C74 Missense_Mutation p.H129Y 0.40 deleterious_low_confidence(0.01) probably_damaging(0.99) TCGA-BR-8487-01 12 55641521 55641521 C T OR6C74 Silent p.G150G 0.32 TCGA-BR-8487-01 12 5604116 5604117 TG - NTF3 Frame_Shift_Del p.A262Lfs*40 0.24 TCGA-BR-8487-01 12 56101281 56101281 C T ITGA7 Silent p.L62L 0.13 TCGA-BR-8487-01 12 56565655 56565655 C T SMARCC2 Missense_Mutation p.E634K 0.40 deleterious(0) possibly_damaging(0.635) TCGA-BR-8487-01 12 56817451 56817451 T C TIMELESS Silent p.E669E 0.19 TCGA-BR-8487-01 12 57539115 57539115 G A LRP1 Missense_Mutation p.R228Q 0.36 benign(0.036) TCGA-BR-8487-01 12 57919294 57919295 - G MBD6 Frame_Shift_Ins p.L184Afs*8 0.27 TCGA-BR-8487-01 12 57921401 57921401 C - MBD6 Frame_Shift_Del p.Q734Nfs*18 0.29 TCGA-BR-8487-01 12 58121689 58121689 G A AGAP2-AS1 3'UTR 0.42 TCGA-BR-8487-01 12 6220099 6220099 C T VWF Missense_Mutation p.V86M 0.21 deleterious(0) probably_damaging(0.997) TCGA-BR-8487-01 12 6438527 6438527 G A TNFRSF1A Missense_Mutation p.A440V 0.44 tolerated(0.12) unknown(0) TCGA-BR-8487-01 12 65857048 65857048 C T MSRB3 Silent p.A175A 0.34 TCGA-BR-8487-01 12 6658950 6658950 T C IFFO1 Missense_Mutation p.N348S 0.37 tolerated(0.09) possibly_damaging(0.481) TCGA-BR-8487-01 12 6675296 6675296 T C NOP2 Missense_Mutation p.N149D 0.37 tolerated(0.47) benign(0.001) TCGA-BR-8487-01 12 6701672 6701672 T - CHD4 Frame_Shift_Del p.K945Nfs*28 0.29 TCGA-BR-8487-01 12 6704507 6704507 G A CHD4 Missense_Mutation p.T705I 0.33 tolerated(0.54) benign(0.003) TCGA-BR-8487-01 12 675144 675144 C A NINJ2 Silent p.V124V 0.33 TCGA-BR-8487-01 12 68696460 68696460 A G MDM1 Missense_Mutation p.Y638H 0.35 tolerated(0.14) benign(0.029) TCGA-BR-8487-01 12 6879359 6879359 C T PTMS Missense_Mutation p.A78V 0.32 tolerated_low_confidence(0.17) unknown(0) TCGA-BR-8487-01 12 69653833 69653833 G C CPSF6 Missense_Mutation p.G442A 0.26 tolerated(0.88) benign(0.201) TCGA-BR-8487-01 12 69784163 69784163 A G YEATS4 3'UTR 0.69 TCGA-BR-8487-01 12 70066743 70066743 T C BEST3 Silent p.V290V 0.37 TCGA-BR-8487-01 12 71977878 71977878 C T LGR5 Silent p.A696A 0.33 TCGA-BR-8487-01 12 72013159 72013159 G A ZFC3H1 Missense_Mutation p.R1694W 0.40 deleterious(0) possibly_damaging(0.719) TCGA-BR-8487-01 12 72038781 72038781 T - ZFC3H1 Frame_Shift_Del p.K385Nfs*9 0.20 TCGA-BR-8487-01 12 7249400 7249400 G - C1RL Frame_Shift_Del p.L351Wfs*35 0.09 TCGA-BR-8487-01 12 7649477 7649477 T C CD163 Missense_Mutation p.Q344R 0.12 tolerated(0.36) benign(0.063) TCGA-BR-8487-01 12 77449827 77449827 T - E2F7 Frame_Shift_Del p.K59Nfs*29 0.39 TCGA-BR-8487-01 12 7843257 7843257 G A GDF3 Silent p.C104C 0.19 TCGA-BR-8487-01 12 7869690 7869690 T - DPPA3 3'UTR 0.36 TCGA-BR-8487-01 12 7882104 7882104 C T CLEC4C 3'UTR 0.50 TCGA-BR-8487-01 12 80752029 80752029 T C OTOGL Silent p.V1998V 0.44 TCGA-BR-8487-01 12 8290783 8290783 T C CLEC4A Missense_Mutation p.V205A 0.42 deleterious(0.04) benign(0.232) TCGA-BR-8487-01 12 88505561 88505561 G A CEP290 Silent p.T709T 0.27 TCGA-BR-8487-01 12 91539866 91539866 C T DCN Missense_Mutation p.R350H 0.09 tolerated(0.05) benign(0.007) TCGA-BR-8487-01 12 9229987 9229987 G A A2M Silent p.S1102S 0.54 TCGA-BR-8487-01 12 92539222 92539222 C T BTG1 Silent p.G30G 0.47 TCGA-BR-8487-01 12 9264788 9264788 G T A2M Silent p.S150S 0.31 TCGA-BR-8487-01 12 94976202 94976202 A G TMCC3 Missense_Mutation p.V64A 0.48 tolerated(0.06) benign(0.075) TCGA-BR-8487-01 12 95918558 95918558 C T USP44 Missense_Mutation p.R544H 0.12 deleterious(0.02) benign(0.103) TCGA-BR-8487-01 12 96361564 96361564 C T AMDHD1 Silent p.G408G 0.41 TCGA-BR-8487-01 12 96429215 96429215 A C LTA4H Missense_Mutation p.V28G 0.40 deleterious(0) possibly_damaging(0.898) TCGA-BR-8487-01 12 9907755 9907755 T C CD69 Missense_Mutation p.Y97C 0.42 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 12 99638168 99638168 C A ANKS1B Missense_Mutation p.D791Y 0.40 deleterious(0) probably_damaging(0.947) TCGA-BR-8487-01 13 100637714 100637714 A T ZIC2 Silent p.A459A 0.35 TCGA-BR-8487-01 13 101757264 101757264 T C NALCN Missense_Mutation p.T873A 0.35 tolerated(0.79) benign(0.053) TCGA-BR-8487-01 13 103290596 103290596 G A TPP2 Missense_Mutation p.G615D 0.34 deleterious(0) probably_damaging(0.965) TCGA-BR-8487-01 13 109753191 109753191 C T MYO16 Nonsense_Mutation p.R1110* 0.26 TCGA-BR-8487-01 13 109779686 109779686 C T MYO16 Missense_Mutation p.A1258V 0.42 tolerated(0.53) benign(0) TCGA-BR-8487-01 13 109779790 109779790 C T MYO16 Missense_Mutation p.R1293W 0.43 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 13 110434515 110434515 C T IRS2 Missense_Mutation p.A1296T 0.29 tolerated_low_confidence(0.34) benign(0) TCGA-BR-8487-01 13 110436740 110436740 C T IRS2 Missense_Mutation p.R554H 0.39 deleterious(0.02) benign(0.067) TCGA-BR-8487-01 13 111371744 111371744 G A ING1 Missense_Mutation p.R245H 0.44 tolerated(0.36) probably_damaging(0.993) TCGA-BR-8487-01 13 111767934 111767934 A - ARHGEF7 Frame_Shift_Del p.T23Pfs*13 0.24 TCGA-BR-8487-01 13 113140461 113140461 A G TUBGCP3 Missense_Mutation p.I857T 0.42 tolerated(0.27) benign(0.002) TCGA-BR-8487-01 13 114469097 114469097 C T TMEM255B Missense_Mutation p.S19L 0.25 tolerated(0.26) benign(0.019) TCGA-BR-8487-01 13 115016110 115016110 C T CDC16 Missense_Mutation p.A353V 0.45 deleterious(0) probably_damaging(0.999) TCGA-BR-8487-01 13 20315777 20315777 C T PSPC1 Missense_Mutation p.R327H 0.52 deleterious(0.02) possibly_damaging(0.548) TCGA-BR-8487-01 13 20716876 20716876 C T GJA3 Nonsense_Mutation p.W184* 0.38 TCGA-BR-8487-01 13 21382668 21382668 G A XPO4 Nonsense_Mutation p.Q516* 0.52 TCGA-BR-8487-01 13 21429891 21429891 C T XPO4 Missense_Mutation p.V111I 0.38 deleterious(0.02) possibly_damaging(0.904) TCGA-BR-8487-01 13 21562928 21562928 G T LATS2 Missense_Mutation p.L331M 0.35 tolerated_low_confidence(0.4) benign(0.003) TCGA-BR-8487-01 13 21563168 21563168 C T LATS2 Missense_Mutation p.A251T 0.33 tolerated_low_confidence(0.43) benign(0.002) TCGA-BR-8487-01 13 21563349 21563349 G - LATS2 Frame_Shift_Del p.Y191Tfs*49 0.21 TCGA-BR-8487-01 13 23905041 23905041 C T SACS Missense_Mutation p.R4325Q 0.09 probably_damaging(0.978) TCGA-BR-8487-01 13 25262564 25262564 G - ATP12A Frame_Shift_Del p.F115Sfs*28 0.31 TCGA-BR-8487-01 13 25484017 25484017 G A CENPJ Missense_Mutation p.A259V 0.36 tolerated(0.25) benign(0.124) TCGA-BR-8487-01 13 25672306 25672306 A - PABPC3 3'UTR 0.31 TCGA-BR-8487-01 13 26436484 26436484 T - ATP8A2 Frame_Shift_Del p.F1042Lfs*17 0.26 TCGA-BR-8487-01 13 27332913 27332913 C A GPR12 3'UTR 0.10 TCGA-BR-8487-01 13 28846132 28846132 G A PAN3 Missense_Mutation p.C658Y 0.39 tolerated(0.05) probably_damaging(0.987) TCGA-BR-8487-01 13 30066788 30066788 A G MTUS2 Missense_Mutation p.M1181V 0.36 tolerated(0.46) benign(0.009) TCGA-BR-8487-01 13 31233407 31233407 T - USPL1 Frame_Shift_Del p.S1067Pfs*5 0.12 TCGA-BR-8487-01 13 31897899 31897899 G A B3GALTL Missense_Mutation p.S399N 0.42 deleterious(0.01) possibly_damaging(0.9) TCGA-BR-8487-01 13 32366044 32366044 A C RXFP2 Missense_Mutation p.N416T 0.33 tolerated(0.27) benign(0.001) TCGA-BR-8487-01 13 32759208 32759208 A G FRY Missense_Mutation p.D1081G 0.39 deleterious(0) benign(0.04) TCGA-BR-8487-01 13 32839600 32839600 G A FRY Missense_Mutation p.R2598H 0.36 tolerated(0.14) benign(0) TCGA-BR-8487-01 13 33635594 33635594 A - KL Frame_Shift_Del p.K795Sfs*2 0.28 TCGA-BR-8487-01 13 36909272 36909272 A - SPG20 Frame_Shift_Del p.F232Lfs*2 0.12 TCGA-BR-8487-01 13 41656921 41656921 A G WBP4 Silent p.K334K 0.37 TCGA-BR-8487-01 13 43180821 43180821 T C TNFSF11 Missense_Mutation p.Y241H 0.44 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 13 44434096 44434096 A G CCDC122 Silent p.H89H 0.30 TCGA-BR-8487-01 13 46287328 46287328 C T SPERT Silent p.A56A 0.39 TCGA-BR-8487-01 13 46542050 46542050 G A ZC3H13 Nonsense_Mutation p.R1304* 0.25 TCGA-BR-8487-01 13 48651317 48651317 A G MED4 Silent p.I257I 0.41 TCGA-BR-8487-01 13 49054342 49054342 T C RB1 3'UTR 0.55 TCGA-BR-8487-01 13 52972005 52972005 G T THSD1 Missense_Mutation p.P128H 0.37 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 13 53217089 53217089 C T HNRNPA1L2 Silent p.D154D 0.33 TCGA-BR-8487-01 13 58240906 58240906 G C PCDH17 Missense_Mutation p.M912I 0.40 tolerated(0.17) benign(0.148) TCGA-BR-8487-01 13 73320157 73320157 A G BORA Missense_Mutation p.I272V 0.24 tolerated(0.4) benign(0.005) TCGA-BR-8487-01 13 73320842 73320842 G T BORA Missense_Mutation p.G359C 0.41 deleterious(0.04) possibly_damaging(0.556) TCGA-BR-8487-01 13 75898394 75898394 G - TBC1D4 Frame_Shift_Del p.P726Hfs*33 0.25 TCGA-BR-8487-01 13 77664391 77664391 T C MYCBP2 Missense_Mutation p.T3421A 0.32 probably_damaging(0.912) TCGA-BR-8487-01 13 78130014 78130014 T C SCEL Missense_Mutation p.S2P 0.30 deleterious(0) probably_damaging(0.972) TCGA-BR-8487-01 13 84454996 84454996 C T SLITRK1 Missense_Mutation p.C216Y 0.31 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 13 92408615 92408615 T C GPC5 Silent p.A407A 0.22 TCGA-BR-8487-01 13 95121135 95121135 G A DCT Missense_Mutation p.P154S 0.34 deleterious(0.04) benign(0.176) TCGA-BR-8487-01 13 95813534 95813534 G A ABCC4 Silent p.Y788Y 0.48 TCGA-BR-8487-01 13 95860172 95860172 T C ABCC4 Missense_Mutation p.T265A 0.47 deleterious(0.02) benign(0.392) TCGA-BR-8487-01 13 98009806 98009806 C T MBNL2 Missense_Mutation p.A292V 0.30 deleterious(0.04) benign(0.138) TCGA-BR-8487-01 13 98828627 98828627 C T RNF113B Silent p.P288P 0.39 TCGA-BR-8487-01 13 98829348 98829348 C T RNF113B Missense_Mutation p.S48N 0.22 tolerated(0.11) benign(0.13) TCGA-BR-8487-01 14 100377764 100377764 A G EML1 Missense_Mutation p.N468D 0.52 deleterious(0.04) benign(0.026) TCGA-BR-8487-01 14 101347477 101347477 T C RTL1 Missense_Mutation p.N1217D 0.44 tolerated_low_confidence(0.6) benign(0.001) TCGA-BR-8487-01 14 102505979 102505979 C T DYNC1H1 Missense_Mutation p.A3867V 0.07 benign(0.001) TCGA-BR-8487-01 14 102918789 102918789 C T TECPR2 Silent p.S1155S 0.16 TCGA-BR-8487-01 14 103174911 103174911 G A RCOR1 Missense_Mutation p.R257Q 0.43 tolerated(0.53) benign(0.437) TCGA-BR-8487-01 14 103372097 103372097 T C TRAF3 Silent p.D561D 0.38 TCGA-BR-8487-01 14 103803104 103803104 C T EIF5 Missense_Mutation p.A82V 0.53 tolerated(0.13) benign(0.3) TCGA-BR-8487-01 14 105174185 105174185 C - INF2 Frame_Shift_Del p.V530Wfs*28 0.35 TCGA-BR-8487-01 14 105174896 105174896 C - INF2 Frame_Shift_Del p.R622Gfs*18 0.29 TCGA-BR-8487-01 14 105353975 105353975 C T CEP170B Silent p.D1133D 0.42 TCGA-BR-8487-01 14 105404879 105404879 G A AHNAK2 Missense_Mutation p.P5637S 0.36 benign(0.118) TCGA-BR-8487-01 14 105716119 105716119 G A BTBD6 Missense_Mutation p.V190I 0.43 tolerated(0.05) benign(0.126) TCGA-BR-8487-01 14 106111025 106111025 C T IGHG2 Missense_Mutation p.E35K 0.11 deleterious(0) possibly_damaging(0.482) TCGA-BR-8487-01 14 20841863 20841863 C T TEP1 Missense_Mutation p.C2193Y 0.48 deleterious(0) probably_damaging(0.972) TCGA-BR-8487-01 14 21424363 21424363 C T RNASE2 Nonsense_Mutation p.R145* 0.40 TCGA-BR-8487-01 14 21542374 21542374 T G ARHGEF40 Missense_Mutation p.L162R 0.21 deleterious(0) probably_damaging(0.991) TCGA-BR-8487-01 14 21549845 21549845 C T ARHGEF40 Missense_Mutation p.R940C 0.21 tolerated(0.18) probably_damaging(0.912) TCGA-BR-8487-01 14 21549929 21549929 C T ARHGEF40 Missense_Mutation p.R968W 0.64 deleterious(0) possibly_damaging(0.708) TCGA-BR-8487-01 14 21896109 21896109 G A CHD8 Missense_Mutation p.A507V 0.38 tolerated(0.24) benign(0.001) TCGA-BR-8487-01 14 21960775 21960775 C T TOX4 Missense_Mutation p.P334S 0.44 tolerated(0.31) benign(0) TCGA-BR-8487-01 14 22392690 22392690 G A TRAV14DV4 Silent p.Q71Q 0.39 TCGA-BR-8487-01 14 22521209 22521209 C A TRAV21 Missense_Mutation p.T77K 0.56 tolerated(0.24) benign(0.039) TCGA-BR-8487-01 14 22564894 22564894 A G TRDV1 Silent p.E115E 0.44 TCGA-BR-8487-01 14 22979963 22979963 C T TRAJ31 Missense_Mutation p.A5V 0.44 unknown(0) TCGA-BR-8487-01 14 23511636 23511636 C T PSMB11 Missense_Mutation p.R68C 0.40 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 14 23517514 23517514 G - CDH24 Frame_Shift_Del p.P712Rfs*129 0.31 TCGA-BR-8487-01 14 23778156 23778157 - T BCL2L2 Frame_Shift_Ins p.A191Cfs*2 0.30 TCGA-BR-8487-01 14 24529193 24529193 G A LRRC16B Missense_Mutation p.R628H 0.12 deleterious(0.05) possibly_damaging(0.815) TCGA-BR-8487-01 14 24676542 24676542 C T TSSK4 Nonsense_Mutation p.R221* 0.45 TCGA-BR-8487-01 14 24724429 24724429 G A TGM1 Missense_Mutation p.T559I 0.42 deleterious(0) benign(0.193) TCGA-BR-8487-01 14 24878156 24878156 G A NYNRIN Missense_Mutation p.A386T 0.28 deleterious_low_confidence(0.04) benign(0.025) TCGA-BR-8487-01 14 25075937 25075937 G C GZMH Missense_Mutation p.P205A 0.40 deleterious(0) probably_damaging(0.994) TCGA-BR-8487-01 14 25102239 25102239 G C GZMB Missense_Mutation p.P29A 0.08 deleterious(0.02) possibly_damaging(0.52) TCGA-BR-8487-01 14 26917784 26917784 G A NOVA1 Missense_Mutation p.A302V 0.13 deleterious(0.03) unknown(0) TCGA-BR-8487-01 14 31416424 31416424 C T STRN3 Silent p.R196R 0.40 TCGA-BR-8487-01 14 31575967 31575967 G A HECTD1 Missense_Mutation p.R2371C 0.47 deleterious(0.01) probably_damaging(0.995) TCGA-BR-8487-01 14 31795515 31795515 G A HEATR5A Missense_Mutation p.A1134V 0.36 tolerated(0.86) benign(0.007) TCGA-BR-8487-01 14 32562545 32562545 T - ARHGAP5 Frame_Shift_Del p.F892Lfs*9 0.27 TCGA-BR-8487-01 14 33015768 33015768 C A AKAP6 Missense_Mutation p.L637I 0.40 deleterious(0.01) probably_damaging(0.996) TCGA-BR-8487-01 14 33165210 33165210 A T AKAP6 Missense_Mutation p.D965V 0.33 deleterious(0.02) probably_damaging(0.993) TCGA-BR-8487-01 14 35074876 35074876 T - SNX6 Frame_Shift_Del p.K118Nfs*12 0.23 TCGA-BR-8487-01 14 35182699 35182701 AGA - CFL2 In_Frame_Del p.S24del 0.45 TCGA-BR-8487-01 14 35871169 35871169 T - NFKBIA 3'UTR 0.43 TCGA-BR-8487-01 14 38679608 38679608 A T SSTR1 Silent p.L338L 0.33 TCGA-BR-8487-01 14 39650122 39650122 G T PNN Missense_Mutation p.Q403H 0.49 deleterious_low_confidence(0.01) possibly_damaging(0.875) TCGA-BR-8487-01 14 39650888 39650888 G T PNN Nonsense_Mutation p.G659* 0.35 TCGA-BR-8487-01 14 39819363 39819363 C - CTAGE5 Frame_Shift_Del p.P777Hfs*15 0.29 TCGA-BR-8487-01 14 45587228 45587228 T A FKBP3 Intron 0.33 TCGA-BR-8487-01 14 45636290 45636291 CA - FANCM Frame_Shift_Del p.H644Wfs*4 0.19 TCGA-BR-8487-01 14 47311144 47311144 G T MDGA2 Missense_Mutation p.P1023H 0.26 tolerated_low_confidence(0.57) benign(0.001) TCGA-BR-8487-01 14 50626743 50626743 T - SOS2 Frame_Shift_Del p.M420* 0.08 TCGA-BR-8487-01 14 51202298 51202298 G A NIN Missense_Mutation p.T1938I 0.19 deleterious(0) possibly_damaging(0.87) TCGA-BR-8487-01 14 51560960 51560960 T C TRIM9 Missense_Mutation p.E233G 0.46 tolerated(0.12) benign(0.081) TCGA-BR-8487-01 14 51561225 51561225 A G TRIM9 Missense_Mutation p.F145L 0.37 tolerated(1) benign(0.001) TCGA-BR-8487-01 14 52188777 52188777 C T FRMD6 Missense_Mutation p.R491W 0.09 deleterious(0.01) benign(0.386) TCGA-BR-8487-01 14 53197054 53197054 T C STYX 5'UTR 0.50 TCGA-BR-8487-01 14 53360082 53360082 T - FERMT2 Frame_Shift_Del p.K152Rfs*4 0.39 TCGA-BR-8487-01 14 55819058 55819058 C - FBXO34 Frame_Shift_Del p.K652Sfs*73 0.22 TCGA-BR-8487-01 14 58033243 58033243 T C SLC35F4 Missense_Mutation p.Y425C 0.25 deleterious(0) probably_damaging(0.999) TCGA-BR-8487-01 14 60622738 60622739 - T DHRS7 Frame_Shift_Ins p.R89Kfs*23 0.27 TCGA-BR-8487-01 14 61451485 61451485 T C SLC38A6 Missense_Mutation p.S92P 0.25 deleterious(0) probably_damaging(0.996) TCGA-BR-8487-01 14 62242910 62242911 - T SNAPC1 Frame_Shift_Ins p.D214* 0.29 TCGA-BR-8487-01 14 64675598 64675598 G A SYNE2 Silent p.Q6108Q 0.37 TCGA-BR-8487-01 14 65008542 65008542 C T HSPA2 Silent p.R325R 0.35 TCGA-BR-8487-01 14 65209941 65209941 C T PLEKHG3 Silent p.R1004R 0.47 TCGA-BR-8487-01 14 65260266 65260266 C T SPTB Silent p.A705A 0.21 TCGA-BR-8487-01 14 67805308 67805308 G T ATP6V1D 3'UTR 0.42 TCGA-BR-8487-01 14 67940463 67940463 C T TMEM229B Missense_Mutation p.V60M 0.38 tolerated(0.52) benign(0.097) TCGA-BR-8487-01 14 68046484 68046484 G A PLEKHH1 Missense_Mutation p.R1025Q 0.32 tolerated(0.1) benign(0.007) TCGA-BR-8487-01 14 68251918 68251918 C T ZFYVE26 Silent p.V1127V 0.11 TCGA-BR-8487-01 14 70237973 70237973 G A SRSF5 Missense_Mutation p.R205H 0.11 deleterious(0.04) unknown(0) TCGA-BR-8487-01 14 70459178 70459178 T C SMOC1 Missense_Mutation p.F191L 0.42 tolerated(0.65) benign(0.275) TCGA-BR-8487-01 14 70477655 70477655 C A SMOC1 Silent p.T283T 0.48 TCGA-BR-8487-01 14 71570119 71570119 A G PCNX Missense_Mutation p.K1943R 0.41 tolerated(0.78) probably_damaging(0.999) TCGA-BR-8487-01 14 72190597 72190597 C T SIPA1L1 Missense_Mutation p.T1502M 0.24 deleterious(0.03) benign(0.011) TCGA-BR-8487-01 14 73437631 73437631 G A ZFYVE1 Nonsense_Mutation p.R765* 0.32 TCGA-BR-8487-01 14 73718770 73718770 C T PAPLN Silent p.H269H 0.27 TCGA-BR-8487-01 14 73726214 73726214 A G PAPLN Missense_Mutation p.Q622R 0.31 tolerated(0.48) benign(0.02) TCGA-BR-8487-01 14 74179976 74179976 G T PNMA1 Missense_Mutation p.L123I 0.09 deleterious(0.01) possibly_damaging(0.814) TCGA-BR-8487-01 14 74417141 74417141 T C COQ6 Missense_Mutation p.Y36H 0.23 deleterious(0.02) probably_damaging(0.976) TCGA-BR-8487-01 14 74726415 74726415 C - VSX2 Frame_Shift_Del p.L232Cfs*70 0.27 TCGA-BR-8487-01 14 74823989 74823989 G A VRTN Missense_Mutation p.S168N 0.09 tolerated(0.34) benign(0.004) TCGA-BR-8487-01 14 74824462 74824463 - G VRTN Frame_Shift_Ins p.V329Rfs*25 0.37 TCGA-BR-8487-01 14 75515058 75515058 T - MLH3 Frame_Shift_Del p.N434Ifs*20 0.25 TCGA-BR-8487-01 14 76108206 76108206 C T FLVCR2 Missense_Mutation p.R492W 0.39 deleterious(0.02) possibly_damaging(0.48) TCGA-BR-8487-01 14 76427394 76427394 G A TGFB3 Missense_Mutation p.R318C 0.09 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 14 76437525 76437525 G A TGFB3 Missense_Mutation p.A197V 0.30 tolerated(0.19) benign(0.003) TCGA-BR-8487-01 14 77275933 77275933 G - ANGEL1 Frame_Shift_Del p.Q40Rfs*2 0.31 TCGA-BR-8487-01 14 77808034 77808034 T A TMED8 3'UTR 0.23 TCGA-BR-8487-01 14 77942189 77942189 C T ISM2 Missense_Mutation p.A489T 0.56 deleterious(0) benign(0.134) TCGA-BR-8487-01 14 81421933 81421933 C T TSHR 5'UTR 0.55 TCGA-BR-8487-01 14 81646522 81646522 T - GTF2A1 3'UTR 0.27 TCGA-BR-8487-01 14 88946100 88946100 G A PTPN21 Missense_Mutation p.R559W 0.42 deleterious(0) possibly_damaging(0.853) TCGA-BR-8487-01 14 89044473 89044473 A - ZC3H14 Frame_Shift_Del p.N425Ifs*18 0.26 TCGA-BR-8487-01 14 90755331 90755331 C T NRDE2 Silent p.T796T 0.43 TCGA-BR-8487-01 14 90755464 90755464 T - NRDE2 Frame_Shift_Del p.N752Tfs*5 0.12 TCGA-BR-8487-01 14 90759111 90759111 T G NRDE2 Missense_Mutation p.H591P 0.35 deleterious(0) probably_damaging(0.995) TCGA-BR-8487-01 14 91806344 91806344 A G CCDC88C Missense_Mutation p.F170L 0.39 tolerated(0.4) probably_damaging(0.999) TCGA-BR-8487-01 14 93717918 93717918 C T BTBD7 Silent p.T611T 0.10 TCGA-BR-8487-01 14 94722808 94722808 G T PPP4R4 Missense_Mutation p.C626F 0.22 deleterious(0) probably_damaging(0.996) TCGA-BR-8487-01 14 94909415 94909415 C A SERPINA11 Missense_Mutation p.K355N 0.38 tolerated(0.11) benign(0.073) TCGA-BR-8487-01 14 95030431 95030431 C T SERPINA4 Silent p.D204D 0.14 TCGA-BR-8487-01 14 95108162 95108162 G T SERPINA13P RNA 0.28 TCGA-BR-8487-01 14 95599742 95599742 G T DICER1 Silent p.T18T 0.37 TCGA-BR-8487-01 14 95670202 95670202 A - CLMN Frame_Shift_Del p.L495Wfs*18 0.29 TCGA-BR-8487-01 14 95884022 95884022 A G SYNE3 3'UTR 0.48 TCGA-BR-8487-01 14 96781919 96781919 G A ATG2B Silent p.G1121G 0.28 TCGA-BR-8487-01 15 101112175 101112175 G A LINS Missense_Mutation p.R440W 0.42 deleterious(0.02) probably_damaging(0.976) TCGA-BR-8487-01 15 101114004 101114004 T - LINS Frame_Shift_Del p.K358Nfs*23 0.35 TCGA-BR-8487-01 15 101832204 101832204 G A SNRPA1 Missense_Mutation p.T91I 0.40 deleterious(0.03) benign(0.152) TCGA-BR-8487-01 15 23331019 23331019 G A HERC2P2 RNA 0.33 TCGA-BR-8487-01 15 23692329 23692329 C T GOLGA6L2 5'UTR 0.38 TCGA-BR-8487-01 15 25222952 25222952 G A SNRPN Missense_Mutation p.V150I 0.31 tolerated(0.08) possibly_damaging(0.785) TCGA-BR-8487-01 15 25223418 25223418 T C SNRPN Missense_Mutation p.I213T 0.46 deleterious_low_confidence(0) unknown(0) TCGA-BR-8487-01 15 25490697 25490697 G A SNORD115-41 RNA 0.38 TCGA-BR-8487-01 15 25924992 25924992 C A ATP10A Missense_Mutation p.K1332N 0.14 tolerated(0.45) benign(0) TCGA-BR-8487-01 15 28361854 28361854 C T HERC2 Silent p.P4522P 0.39 TCGA-BR-8487-01 15 28412940 28412940 C T HERC2 Missense_Mutation p.A3483T 0.44 benign(0.297) TCGA-BR-8487-01 15 28422219 28422219 A G HERC2 Silent p.D3103D 0.39 TCGA-BR-8487-01 15 28427565 28427565 G A HERC2 Silent p.G2973G 0.34 TCGA-BR-8487-01 15 28474910 28474910 C T HERC2 Silent p.P1631P 0.22 TCGA-BR-8487-01 15 30019134 30019134 C A TJP1 Missense_Mutation p.W721L 0.48 deleterious(0.02) possibly_damaging(0.895) TCGA-BR-8487-01 15 30065520 30065520 C T TJP1 Missense_Mutation p.R42Q 0.35 deleterious(0.02) probably_damaging(0.909) TCGA-BR-8487-01 15 31664455 31664455 C T KLF13 Missense_Mutation p.R274C 0.53 deleterious_low_confidence(0) unknown(0) TCGA-BR-8487-01 15 31851311 31851311 G A OTUD7A Silent p.C137C 0.23 TCGA-BR-8487-01 15 33261465 33261465 G A FMN1 Missense_Mutation p.L590F 0.41 deleterious(0) unknown(0) TCGA-BR-8487-01 15 33795832 33795832 T C RYR3 Missense_Mutation p.Y58H 0.42 probably_damaging(0.927) TCGA-BR-8487-01 15 34149996 34149996 G A RYR3 Missense_Mutation p.G4675S 0.41 probably_damaging(0.979) TCGA-BR-8487-01 15 34159952 34159952 C T AVEN Silent p.G239G 0.42 TCGA-BR-8487-01 15 34395002 34395002 C T PGBD4 Silent p.G90G 0.12 TCGA-BR-8487-01 15 34673585 34673585 T C GOLGA8A 3'UTR 0.11 TCGA-BR-8487-01 15 35231009 35231009 T C AQR Missense_Mutation p.Y216C 0.47 tolerated(0.2) benign(0.042) TCGA-BR-8487-01 15 38798066 38798066 C T RASGRP1 Missense_Mutation p.R433Q 0.35 deleterious(0.01) probably_damaging(0.981) TCGA-BR-8487-01 15 38805064 38805064 A G RASGRP1 Missense_Mutation p.W257R 0.13 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 15 40300240 40300240 A G EIF2AK4 Silent p.E1140E 0.34 TCGA-BR-8487-01 15 40501868 40501868 T C BUB1B Missense_Mutation p.Y726H 0.38 tolerated(0.51) benign(0.001) TCGA-BR-8487-01 15 40558610 40558610 C T PAK6 Missense_Mutation p.R258C 0.46 tolerated(0.16) possibly_damaging(0.487) TCGA-BR-8487-01 15 40631782 40631782 C - C15orf52 Frame_Shift_Del p.M99Wfs*3 0.27 TCGA-BR-8487-01 15 40659836 40659836 G A DISP2 Missense_Mutation p.R508H 0.36 tolerated(0.32) benign(0.334) TCGA-BR-8487-01 15 40660921 40660921 T - DISP2 Frame_Shift_Del p.F871Sfs*5 0.33 TCGA-BR-8487-01 15 41105975 41105975 G A ZFYVE19 Missense_Mutation p.R392Q 0.41 tolerated(0.99) benign(0.003) TCGA-BR-8487-01 15 41476734 41476734 G A EXD1 Missense_Mutation p.R314C 0.37 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 15 41865979 41865979 C T TYRO3 Missense_Mutation p.R750C 0.17 deleterious(0) probably_damaging(0.999) TCGA-BR-8487-01 15 42109837 42109837 G A MAPKBP1 Missense_Mutation p.R609Q 0.08 deleterious(0) possibly_damaging(0.861) TCGA-BR-8487-01 15 42126974 42126974 A G JMJD7-PLA2G4B Missense_Mutation p.K34R 0.29 tolerated_low_confidence(1) benign(0) TCGA-BR-8487-01 15 42128412 42128412 C T JMJD7-PLA2G4B Missense_Mutation p.P199L 0.18 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-BR-8487-01 15 42139594 42139594 G A PLA2G4B Silent p.S900S 0.41 TCGA-BR-8487-01 15 42600423 42600425 CTT - GANC In_Frame_Del p.S212del 0.52 TCGA-BR-8487-01 15 42651981 42651981 T - CAPN3 5'UTR 0.24 TCGA-BR-8487-01 15 42710116 42710116 C A ZNF106 Missense_Mutation p.D1828Y 0.27 deleterious(0) possibly_damaging(0.779) TCGA-BR-8487-01 15 42742066 42742066 G A ZNF106 Missense_Mutation p.R779W 0.10 deleterious(0.02) probably_damaging(0.991) TCGA-BR-8487-01 15 43120161 43120161 G A TTBK2 Nonsense_Mutation p.R168* 0.08 TCGA-BR-8487-01 15 43351982 43351982 T C UBR1 Silent p.E301E 0.27 TCGA-BR-8487-01 15 43452973 43452973 G A TMEM62 Missense_Mutation p.R426H 0.29 deleterious(0) possibly_damaging(0.548) TCGA-BR-8487-01 15 43500944 43500944 C T EPB42 Missense_Mutation p.V318M 0.15 deleterious(0) probably_damaging(0.997) TCGA-BR-8487-01 15 43620638 43620638 C T LCMT2 Missense_Mutation p.A684T 0.15 tolerated_low_confidence(0.62) benign(0.005) TCGA-BR-8487-01 15 43814218 43814218 A G MAP1A Missense_Mutation p.T183A 0.46 benign(0.009) TCGA-BR-8487-01 15 43818539 43818539 T C MAP1A Missense_Mutation p.L1623P 0.09 benign(0.031) TCGA-BR-8487-01 15 43827486 43827486 C - PPIP5K1 Frame_Shift_Del p.E1230Sfs*126 0.27 TCGA-BR-8487-01 15 44037264 44037264 C A PDIA3 5'Flank 0.42 TCGA-BR-8487-01 15 44843099 44843099 A - EIF3J Frame_Shift_Del p.E61Rfs*5 0.30 TCGA-BR-8487-01 15 45003747 45003747 G A B2M Translation_Start_Site p.M1? 0.28 deleterious(0) possibly_damaging(0.775) TCGA-BR-8487-01 15 45007833 45007834 - A B2M Frame_Shift_Ins p.D96Rfs*2 0.30 TCGA-BR-8487-01 15 45444205 45444205 G A DUOX1 Missense_Mutation p.V1050M 0.11 deleterious(0.01) benign(0.109) TCGA-BR-8487-01 15 48703365 48703365 C T FBN1 Missense_Mutation p.S2813N 0.28 possibly_damaging(0.821) TCGA-BR-8487-01 15 48829944 48829944 G A FBN1 Silent p.S200S 0.31 TCGA-BR-8487-01 15 50336843 50336843 G T ATP8B4 Missense_Mutation p.P83H 0.41 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 15 50544656 50544656 C T HDC Missense_Mutation p.A338T 0.36 tolerated(0.49) possibly_damaging(0.665) TCGA-BR-8487-01 15 50595164 50595164 T C GABPB1 Missense_Mutation p.I145V 0.22 tolerated(0.16) benign(0) TCGA-BR-8487-01 15 50763891 50763892 - G USP8 Frame_Shift_Ins p.N252Efs*9 0.28 TCGA-BR-8487-01 15 51696681 51696681 C T GLDN Silent p.H462H 0.36 TCGA-BR-8487-01 15 51868358 51868358 A G DMXL2 Silent p.D36D 0.41 TCGA-BR-8487-01 15 52539652 52539652 T C MYO5C Intron 0.38 TCGA-BR-8487-01 15 55621922 55621922 T - PIGB Frame_Shift_Del p.C177Afs*26 0.35 TCGA-BR-8487-01 15 55912360 55912361 - A PRTG Frame_Shift_Ins p.S1102Lfs*9 0.15 TCGA-BR-8487-01 15 57565312 57565312 A G TCF12 Silent p.E610E 0.33 TCGA-BR-8487-01 15 58006972 58006972 A G POLR2M 3'UTR 0.25 TCGA-BR-8487-01 15 58007033 58007033 G A POLR2M 3'UTR 0.33 TCGA-BR-8487-01 15 58853170 58853170 C T LIPC Missense_Mutation p.P387S 0.36 tolerated(0.06) possibly_damaging(0.517) TCGA-BR-8487-01 15 58855922 58855922 G T LIPC Missense_Mutation p.R463I 0.21 deleterious(0) probably_damaging(0.972) TCGA-BR-8487-01 15 59430514 59430514 G A MYO1E Missense_Mutation p.P1045S 0.09 deleterious(0.03) possibly_damaging(0.735) TCGA-BR-8487-01 15 60715756 60715756 T C NARG2 3'UTR 0.67 TCGA-BR-8487-01 15 60806876 60806876 A G RORA Silent p.S154S 0.43 TCGA-BR-8487-01 15 62173044 62173044 G A VPS13C Missense_Mutation p.R3296W 0.42 deleterious(0.05) benign(0.012) TCGA-BR-8487-01 15 62989915 62989915 C T TLN2 Missense_Mutation p.R441W 0.35 deleterious(0) possibly_damaging(0.676) TCGA-BR-8487-01 15 63421745 63421745 T C LACTB Silent p.A338A 0.58 TCGA-BR-8487-01 15 63889658 63889658 T - FBXL22 Frame_Shift_Del p.F23Sfs*2 0.12 TCGA-BR-8487-01 15 63933787 63933787 G A HERC1 Missense_Mutation p.A3830V 0.36 probably_damaging(0.993) TCGA-BR-8487-01 15 64444886 64444886 A G SNX22 Missense_Mutation p.N70S 0.38 deleterious(0.01) possibly_damaging(0.871) TCGA-BR-8487-01 15 64506164 64506165 - T CSNK1G1 Frame_Shift_Ins p.H202Tfs*5 0.21 TCGA-BR-8487-01 15 64686218 64686218 A - TRIP4 Frame_Shift_Del p.G61Vfs*4 0.32 TCGA-BR-8487-01 15 65108793 65108793 G A PIF1 Missense_Mutation p.R616W 0.38 deleterious(0) possibly_damaging(0.591) TCGA-BR-8487-01 15 65891328 65891328 G A VWA9 Missense_Mutation p.L106F 0.29 tolerated(0.07) possibly_damaging(0.667) TCGA-BR-8487-01 15 65917248 65917248 A - SLC24A1 Frame_Shift_Del p.N279Tfs*20 0.33 TCGA-BR-8487-01 15 66844070 66844070 C T LCTL Missense_Mutation p.R485H 0.39 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 15 68438952 68438952 C T PIAS1 Nonsense_Mutation p.R248* 0.34 TCGA-BR-8487-01 15 68445989 68445989 T C PIAS1 Missense_Mutation p.L297S 0.31 deleterious(0) probably_damaging(0.922) TCGA-BR-8487-01 15 69560894 69560894 G T GLCE Nonsense_Mutation p.G389* 0.27 TCGA-BR-8487-01 15 70961076 70961076 T - UACA Frame_Shift_Del p.K649Nfs*2 0.29 TCGA-BR-8487-01 15 70963407 70963407 G A UACA Nonsense_Mutation p.Q398* 0.36 TCGA-BR-8487-01 15 72103855 72103855 G A NR2E3 RNA 0.41 TCGA-BR-8487-01 15 74032580 74032580 C T C15orf59 Missense_Mutation p.R187Q 0.46 deleterious(0.01) probably_damaging(0.998) TCGA-BR-8487-01 15 74240214 74240214 G A LOXL1 Missense_Mutation p.D525N 0.29 deleterious(0) probably_damaging(0.965) TCGA-BR-8487-01 15 74328248 74328248 C - PML Intron 0.31 TCGA-BR-8487-01 15 74426494 74426494 T C ISLR2 Missense_Mutation p.Y467H 0.37 deleterious(0.05) probably_damaging(0.994) TCGA-BR-8487-01 15 74883692 74883692 G A ARID3B Missense_Mutation p.R361H 0.09 tolerated(0.4) probably_damaging(0.999) TCGA-BR-8487-01 15 75656966 75656966 C A MAN2C1 Missense_Mutation p.G155W 0.42 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 15 75702607 75702607 C A SIN3A Missense_Mutation p.K343N 0.14 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 15 76643603 76643603 C T SCAPER Silent p.A1358A 0.20 TCGA-BR-8487-01 15 78765766 78765766 T A IREB2 Intron 0.25 TCGA-BR-8487-01 15 79231492 79231492 C A CTSH Missense_Mutation p.W38L 0.17 deleterious(0.01) probably_damaging(0.99) TCGA-BR-8487-01 15 81241280 81241280 C T KIAA1199 3'UTR 0.41 TCGA-BR-8487-01 15 81271633 81271633 T - MESDC2 Frame_Shift_Del p.K211Rfs*6 0.35 TCGA-BR-8487-01 15 81295494 81295494 C T MESDC1 Silent p.S294S 0.69 TCGA-BR-8487-01 15 81593720 81593720 C T IL16 Missense_Mutation p.T1062M 0.39 deleterious(0.01) possibly_damaging(0.776) TCGA-BR-8487-01 15 82512123 82512123 G T EFTUD1 Missense_Mutation p.P494H 0.23 tolerated(0.1) benign(0.195) TCGA-BR-8487-01 15 83502091 83502091 G A WHAMM Missense_Mutation p.A745T 0.36 tolerated(0.1) probably_damaging(0.999) TCGA-BR-8487-01 15 83710649 83710649 G C BTBD1 Missense_Mutation p.D231E 0.51 tolerated(0.53) probably_damaging(0.981) TCGA-BR-8487-01 15 85383636 85383636 C T ALPK3 Missense_Mutation p.R578W 0.29 tolerated(0.06) benign(0.004) TCGA-BR-8487-01 15 85411791 85411791 C T ALPK3 3'UTR 0.30 TCGA-BR-8487-01 15 86122437 86122437 G - AKAP13 Frame_Shift_Del p.E381Kfs*29 0.30 TCGA-BR-8487-01 15 86287017 86287017 A - AKAP13 Frame_Shift_Del p.K2791Rfs*34 0.45 TCGA-BR-8487-01 15 87217585 87217585 G A AGBL1 Missense_Mutation p.A1001T 0.50 tolerated(0.26) benign(0.079) TCGA-BR-8487-01 15 89172551 89172551 G A AEN Missense_Mutation p.R212Q 0.33 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 15 89864087 89864087 C T POLG Missense_Mutation p.R964H 0.41 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 15 89876391 89876391 C T POLG Missense_Mutation p.V199M 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-BR-8487-01 15 89876408 89876408 C T POLG Missense_Mutation p.R193Q 0.39 tolerated(0.49) benign(0.006) TCGA-BR-8487-01 15 90616474 90616474 G A ZNF710 Missense_Mutation p.V544M 0.45 deleterious(0) probably_damaging(0.997) TCGA-BR-8487-01 15 91488239 91488239 T C UNC45A Missense_Mutation p.L382P 0.42 deleterious(0) probably_damaging(0.999) TCGA-BR-8487-01 15 91542148 91542148 C A VPS33B 3'UTR 0.55 TCGA-BR-8487-01 15 92706482 92706483 CA - SLCO3A1 3'UTR 0.31 TCGA-BR-8487-01 15 94942207 94942207 G A MCTP2 Silent p.P602P 0.28 TCGA-BR-8487-01 15 97326799 97326799 G A SPATA8 5'UTR 0.52 TCGA-BR-8487-01 15 97328284 97328284 T C SPATA8 Silent p.A85A 0.36 TCGA-BR-8487-01 15 99442758 99442758 G A IGF1R Silent p.T385T 0.37 TCGA-BR-8487-01 15 99696478 99696478 A G TTC23 Missense_Mutation p.S340P 0.48 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 15 99926485 99926485 C A LRRC28 3'UTR 0.38 TCGA-BR-8487-01 16 1004665 1004665 G A LMF1 Silent p.F65F 0.25 TCGA-BR-8487-01 16 10729710 10729710 C T TEKT5 Silent p.K384K 0.39 TCGA-BR-8487-01 16 112645 112645 C T RHBDF1 Missense_Mutation p.E282K 0.38 deleterious(0.04) possibly_damaging(0.895) TCGA-BR-8487-01 16 11859392 11859392 A G ZC3H7A Missense_Mutation p.F558L 0.32 tolerated(0.13) benign(0) TCGA-BR-8487-01 16 1250483 1250483 A G CACNA1H Missense_Mutation p.Y344C 0.32 deleterious(0) probably_damaging(0.999) TCGA-BR-8487-01 16 1270119 1270119 C T CACNA1H Missense_Mutation p.R2063W 0.50 deleterious(0.05) benign(0.011) TCGA-BR-8487-01 16 1270496 1270496 C - CACNA1H Frame_Shift_Del p.C2191Afs*26 0.29 TCGA-BR-8487-01 16 1270845 1270845 C T CACNA1H Missense_Mutation p.P2305S 0.41 tolerated_low_confidence(0.07) benign(0.08) TCGA-BR-8487-01 16 1391476 1391476 G T BAIAP3 Missense_Mutation p.K274N 0.38 tolerated(1) benign(0.047) TCGA-BR-8487-01 16 15026588 15026588 C T NPIPA1 5'Flank 0.09 TCGA-BR-8487-01 16 15091639 15091639 A G PDXDC1 Silent p.G17G 0.19 TCGA-BR-8487-01 16 15785104 15785104 G A NDE1 Silent p.T209T 0.23 TCGA-BR-8487-01 16 15797970 15797970 C T MYH11 Missense_Mutation p.E1940K 0.49 benign(0.026) TCGA-BR-8487-01 16 15818179 15818179 C T MYH11 Missense_Mutation p.E1409K 0.50 probably_damaging(0.998) TCGA-BR-8487-01 16 1657270 1657270 C T IFT140 5'UTR 0.14 TCGA-BR-8487-01 16 1709953 1709953 C - CRAMP1L Frame_Shift_Del p.P769Qfs*5 0.14 TCGA-BR-8487-01 16 1793366 1793366 C - MAPK8IP3 Frame_Shift_Del p.L213Wfs*23 0.23 TCGA-BR-8487-01 16 1836922 1836922 C T NUBP2 Silent p.D100D 0.13 TCGA-BR-8487-01 16 19087090 19087090 G A COQ7 Missense_Mutation p.V139M 0.37 deleterious(0) possibly_damaging(0.819) TCGA-BR-8487-01 16 20548678 20548678 A G ACSM2B Missense_Mutation p.F546L 0.38 deleterious(0) probably_damaging(0.928) TCGA-BR-8487-01 16 21145631 21145631 A G DNAH3 Missense_Mutation p.L344P 0.41 deleterious(0) probably_damaging(0.954) TCGA-BR-8487-01 16 21220960 21220960 T C ZP2 Missense_Mutation p.R108G 0.24 tolerated(0.08) benign(0.147) TCGA-BR-8487-01 16 2138052 2138052 T C TSC2 Missense_Mutation p.M1691T 0.27 deleterious(0) benign(0.282) TCGA-BR-8487-01 16 2140589 2140589 G A PKD1 Silent p.L4047L 0.23 TCGA-BR-8487-01 16 21690264 21690264 G A OTOA Silent p.A40A 0.28 TCGA-BR-8487-01 16 2222338 2222338 C T TRAF7 Nonsense_Mutation p.R208* 0.28 TCGA-BR-8487-01 16 2229782 2229782 G - CASKIN1 Frame_Shift_Del p.P1196Rfs*37 0.47 TCGA-BR-8487-01 16 2230431 2230431 G A CASKIN1 Missense_Mutation p.R980W 0.47 benign(0.006) TCGA-BR-8487-01 16 2273712 2273712 T C E4F1 Missense_Mutation p.V33A 0.57 tolerated_low_confidence(1) benign(0) TCGA-BR-8487-01 16 22926718 22926718 C T HS3ST2 Silent p.C313C 0.19 TCGA-BR-8487-01 16 23197569 23197569 C T SCNN1G 5'UTR 0.33 TCGA-BR-8487-01 16 2376256 2376256 G A ABCA3 Missense_Mutation p.T25M 0.29 deleterious(0.04) probably_damaging(0.992) TCGA-BR-8487-01 16 24372935 24372935 G A CACNG3 Silent p.R233R 0.36 TCGA-BR-8487-01 16 25228661 25228661 G A AQP8 Missense_Mutation p.G52E 0.19 deleterious(0) probably_damaging(0.999) TCGA-BR-8487-01 16 25239832 25239832 C T AQP8 3'UTR 0.21 TCGA-BR-8487-01 16 27221729 27221729 C T KDM8 Silent p.Y133Y 0.43 TCGA-BR-8487-01 16 27475972 27475972 G - GTF3C1 Frame_Shift_Del p.E1848Rfs*33 0.26 TCGA-BR-8487-01 16 27519890 27519890 G A GTF3C1 Nonsense_Mutation p.R405* 0.43 TCGA-BR-8487-01 16 28331528 28331528 C T SBK1 Silent p.C187C 0.39 TCGA-BR-8487-01 16 28331667 28331667 G A SBK1 Missense_Mutation p.V234M 0.54 tolerated(0.11) benign(0.067) TCGA-BR-8487-01 16 2836566 2836566 G A PRSS33 5'UTR 0.19 TCGA-BR-8487-01 16 28508861 28508861 G A APOBR Silent p.E833E 0.24 TCGA-BR-8487-01 16 28618377 28618377 C T SULT1A1 Missense_Mutation p.A132T 0.20 deleterious(0.01) benign(0.354) TCGA-BR-8487-01 16 28619676 28619676 C T SULT1A1 Missense_Mutation p.R103Q 0.10 deleterious(0.03) possibly_damaging(0.568) TCGA-BR-8487-01 16 28838262 28838262 G - ATXN2L Frame_Shift_Del p.G234Vfs*33 0.19 TCGA-BR-8487-01 16 28883208 28883208 C - SH2B1 Frame_Shift_Del p.R475Afs*68 0.31 TCGA-BR-8487-01 16 28912049 28912049 C T ATP2A1 Nonsense_Mutation p.R638* 0.47 TCGA-BR-8487-01 16 28997880 28997880 C T LAT Silent p.Y146Y 0.36 TCGA-BR-8487-01 16 2987385 2987385 G T FLYWCH1 Missense_Mutation p.D592Y 0.22 deleterious(0.03) probably_damaging(0.915) TCGA-BR-8487-01 16 29997696 29997696 G A TAOK2 Silent p.T701T 0.21 TCGA-BR-8487-01 16 30392723 30392723 C T SEPT1 Missense_Mutation p.R131Q 0.41 benign(0.354) TCGA-BR-8487-01 16 304591 304591 T - ITFG3 Frame_Shift_Del p.F61Lfs*24 0.29 TCGA-BR-8487-01 16 30536054 30536054 G T ZNF768 Silent p.S469S 0.38 TCGA-BR-8487-01 16 30569372 30569372 C T ZNF764 Silent p.R44R 0.23 TCGA-BR-8487-01 16 3063895 3063895 G - CLDN9 Frame_Shift_Del p.L180Sfs*196 0.32 TCGA-BR-8487-01 16 3073914 3073914 C G HCFC1R1 Missense_Mutation p.G10A 0.38 tolerated_low_confidence(0.1) benign(0) TCGA-BR-8487-01 16 30747684 30747684 C A SRCAP Missense_Mutation p.A2298D 0.28 probably_damaging(0.954) TCGA-BR-8487-01 16 30768017 30768017 C - PHKG2 Frame_Shift_Del p.R305Afs*19 0.22 TCGA-BR-8487-01 16 31012433 31012433 C T STX1B Missense_Mutation p.A63T 0.30 deleterious(0.01) benign(0.018) TCGA-BR-8487-01 16 31122516 31122516 C T BCKDK Missense_Mutation p.P274L 0.37 tolerated(0.26) possibly_damaging(0.646) TCGA-BR-8487-01 16 31196402 31196402 T C FUS Silent p.G222G 0.52 TCGA-BR-8487-01 16 31499965 31499965 G A SLC5A2 Silent p.A384A 0.15 TCGA-BR-8487-01 16 319259 319259 C T RGS11 3'UTR 0.38 TCGA-BR-8487-01 16 3304265 3304265 G A MEFV Missense_Mutation p.A268V 0.09 tolerated(0.5) benign(0.019) TCGA-BR-8487-01 16 3340259 3340259 C T ZNF263 Missense_Mutation p.R585W 0.39 deleterious(0.02) benign(0.425) TCGA-BR-8487-01 16 3543946 3543946 G - C16orf90 Frame_Shift_Del p.Q148Sfs*113 0.29 TCGA-BR-8487-01 16 3644517 3644517 G A SLX4 Silent p.S699S 0.29 TCGA-BR-8487-01 16 3647811 3647811 T C SLX4 Missense_Mutation p.I451M 0.34 tolerated(0.29) benign(0.012) TCGA-BR-8487-01 16 3713583 3713583 G A TRAP1 Intron 0.11 TCGA-BR-8487-01 16 3778834 3778834 G A CREBBP Missense_Mutation p.R2072W 0.45 unknown(0) TCGA-BR-8487-01 16 3781863 3781863 G A CREBBP Missense_Mutation p.R1602C 0.43 unknown(0) TCGA-BR-8487-01 16 396787 396787 G - AXIN1 Frame_Shift_Del p.P80Hfs*4 0.11 TCGA-BR-8487-01 16 4029167 4029167 C T ADCY9 Missense_Mutation p.A877T 0.32 tolerated(0.13) benign(0.029) TCGA-BR-8487-01 16 4165092 4165092 A G ADCY9 Missense_Mutation p.Y118H 0.36 deleterious(0.01) possibly_damaging(0.886) TCGA-BR-8487-01 16 4432529 4432529 G - VASN Frame_Shift_Del p.E552Rfs*76 0.38 TCGA-BR-8487-01 16 4516334 4516334 T C NMRAL1 Missense_Mutation p.I117V 0.48 tolerated(1) benign(0.002) TCGA-BR-8487-01 16 46629544 46629544 G A SHCBP1 Silent p.L462L 0.41 TCGA-BR-8487-01 16 46695735 46695735 T - VPS35 Frame_Shift_Del p.A703Lfs*2 0.29 TCGA-BR-8487-01 16 4747357 4747358 - G ANKS3 Frame_Shift_Ins p.L624Pfs*7 0.27 TCGA-BR-8487-01 16 48149419 48149419 G A ABCC12 Silent p.A632A 0.35 TCGA-BR-8487-01 16 48258336 48258336 G A ABCC11 Missense_Mutation p.H134Y 0.51 tolerated(0.08) benign(0.004) TCGA-BR-8487-01 16 48303976 48303976 C T LONP2 Silent p.Y344Y 0.16 TCGA-BR-8487-01 16 48337150 48337150 G A LONP2 Missense_Mutation p.V577M 0.36 deleterious(0) probably_damaging(0.958) TCGA-BR-8487-01 16 50362621 50362621 G A BRD7 Missense_Mutation p.T349M 0.46 deleterious(0) probably_damaging(0.997) TCGA-BR-8487-01 16 50745331 50745331 G - NOD2 Frame_Shift_Del p.S506Pfs*11 0.21 TCGA-BR-8487-01 16 5075682 5075682 C T NAGPA Missense_Mutation p.A449T 0.35 benign(0.001) TCGA-BR-8487-01 16 50826532 50826532 A C CYLD Missense_Mutation p.M756L 0.31 deleterious(0) benign(0.006) TCGA-BR-8487-01 16 50828188 50828188 C T CYLD Silent p.P845P 0.45 TCGA-BR-8487-01 16 52478236 52478236 T - TOX3 Frame_Shift_Del p.E314Nfs*3 0.33 TCGA-BR-8487-01 16 57494015 57494015 C T COQ9 Missense_Mutation p.T307M 0.60 deleterious(0) possibly_damaging(0.895) TCGA-BR-8487-01 16 57756718 57756718 T G CCDC135 Missense_Mutation p.L458R 0.35 deleterious(0) probably_damaging(0.996) TCGA-BR-8487-01 16 57778372 57778372 G A KATNB1 Missense_Mutation p.A80T 0.18 tolerated(0.07) benign(0.104) TCGA-BR-8487-01 16 58579291 58579291 C T CNOT1 Missense_Mutation p.A1371T 0.42 tolerated(0.24) benign(0.389) TCGA-BR-8487-01 16 58705111 58705111 C - SLC38A7 Frame_Shift_Del p.V357Cfs*38 0.26 TCGA-BR-8487-01 16 624123 624123 G A PIGQ Missense_Mutation p.G17R 0.28 deleterious_low_confidence(0) probably_damaging(1) TCGA-BR-8487-01 16 624252 624252 G A PIGQ Missense_Mutation p.V60M 0.39 tolerated_low_confidence(0.06) benign(0.117) TCGA-BR-8487-01 16 66436947 66436947 A G CDH5 Missense_Mutation p.S744G 0.43 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 16 67035282 67035282 A G CES4A Missense_Mutation p.E203G 0.50 deleterious(0.04) benign(0.027) TCGA-BR-8487-01 16 67219121 67219121 C T EXOC3L1 Missense_Mutation p.S556N 0.39 tolerated(0.41) benign(0.177) TCGA-BR-8487-01 16 67223035 67223035 G A EXOC3L1 Missense_Mutation p.A32V 0.44 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 16 67333364 67333364 C A KCTD19 Missense_Mutation p.K296N 0.42 tolerated(0.4) benign(0.376) TCGA-BR-8487-01 16 67470622 67470622 C T HSD11B2 Missense_Mutation p.R312C 0.18 deleterious(0.02) benign(0.368) TCGA-BR-8487-01 16 67472920 67472920 C T ATP6V0D1 Missense_Mutation p.R257Q 0.40 tolerated(0.34) benign(0.305) TCGA-BR-8487-01 16 67645339 67645339 A - CTCF Frame_Shift_Del p.T204Qfs*18 0.29 TCGA-BR-8487-01 16 67694125 67694125 C A ACD Missense_Mutation p.G86V 0.08 deleterious_low_confidence(0.04) benign(0.024) TCGA-BR-8487-01 16 67700086 67700086 G A ENKD1 Silent p.G56G 0.56 TCGA-BR-8487-01 16 67861838 67861838 G T TSNAXIP1 Missense_Mutation p.R640L 0.40 deleterious(0) benign(0.185) TCGA-BR-8487-01 16 67943431 67943431 C T PSKH1 Missense_Mutation p.T260M 0.10 deleterious(0) probably_damaging(0.999) TCGA-BR-8487-01 16 68265115 68265115 G A ESRP2 Silent p.R559R 0.22 TCGA-BR-8487-01 16 683446 683446 G T WFIKKN1 Missense_Mutation p.A346S 0.21 tolerated(0.31) benign(0.042) TCGA-BR-8487-01 16 68405948 68405948 C T SMPD3 Missense_Mutation p.R46H 0.19 tolerated(0.09) benign(0.009) TCGA-BR-8487-01 16 68597471 68597471 A - ZFP90 Frame_Shift_Del p.T262Pfs*152 0.09 TCGA-BR-8487-01 16 69171777 69171777 A G CIRH1A Missense_Mutation p.D142G 0.42 tolerated(0.14) benign(0.168) TCGA-BR-8487-01 16 69373160 69373160 C T COG8 Missense_Mutation p.R99H 0.35 tolerated(0.12) benign(0.009) TCGA-BR-8487-01 16 69788525 69788525 C A NOB1 Missense_Mutation p.K56N 0.46 deleterious(0) possibly_damaging(0.451) TCGA-BR-8487-01 16 69905707 69905707 G T WWP2 Silent p.R192R 0.29 TCGA-BR-8487-01 16 700148 700148 A G WDR90 Missense_Mutation p.H87R 0.38 deleterious(0) probably_damaging(0.995) TCGA-BR-8487-01 16 70310972 70310972 C T AARS Missense_Mutation p.R77Q 0.44 deleterious(0) probably_damaging(0.999) TCGA-BR-8487-01 16 70497538 70497538 G A FUK Missense_Mutation p.R32Q 0.16 deleterious(0.03) probably_damaging(0.987) TCGA-BR-8487-01 16 70698147 70698147 G - MTSS1L Frame_Shift_Del p.G560Afs*34 0.24 TCGA-BR-8487-01 16 71007853 71007854 - GA HYDIN Frame_Shift_Ins p.R1703Lfs*51 0.09 TCGA-BR-8487-01 16 716929 716929 T - WDR90 Frame_Shift_Del p.F1678Lfs*5 0.20 TCGA-BR-8487-01 16 72143392 72143392 G A DHX38 Missense_Mutation p.A1154T 0.14 tolerated(0.37) benign(0.003) TCGA-BR-8487-01 16 72821960 72821960 G - ZFHX3 Frame_Shift_Del p.A3407Lfs*78 0.28 TCGA-BR-8487-01 16 72830944 72830944 T A ZFHX3 Missense_Mutation p.K1879N 0.26 probably_damaging(0.95) TCGA-BR-8487-01 16 72831385 72831385 T C ZFHX3 Silent p.Q1732Q 0.32 TCGA-BR-8487-01 16 72991553 72991553 T C ZFHX3 Missense_Mutation p.N831S 0.43 probably_damaging(0.97) TCGA-BR-8487-01 16 74729555 74729555 C T MLKL Missense_Mutation p.R34H 0.32 tolerated(0.05) possibly_damaging(0.818) TCGA-BR-8487-01 16 75146325 75146325 C T LDHD Missense_Mutation p.V485M 0.30 tolerated(0.25) benign(0.105) TCGA-BR-8487-01 16 75256679 75256679 C T CTRB1 Silent p.P22P 0.58 TCGA-BR-8487-01 16 75263368 75263368 C T BCAR1 3'UTR 0.58 TCGA-BR-8487-01 16 75276437 75276437 C T BCAR1 Silent p.G234G 0.46 TCGA-BR-8487-01 16 75276727 75276727 G T BCAR1 Missense_Mutation p.P138T 0.50 tolerated(0.17) benign(0.001) TCGA-BR-8487-01 16 75600351 75600351 C A GABARAPL2 5'UTR 0.29 TCGA-BR-8487-01 16 77389931 77389931 C T ADAMTS18 Missense_Mutation p.A456T 0.10 tolerated(0.32) benign(0.006) TCGA-BR-8487-01 16 779157 779157 G A HAGHL Intron 0.51 TCGA-BR-8487-01 16 780543 780543 C T NARFL Silent p.A435A 0.36 TCGA-BR-8487-01 16 80667009 80667009 A G CDYL2 Silent p.C247C 0.08 TCGA-BR-8487-01 16 81009998 81009998 C T CMC2 Missense_Mutation p.E78K 0.19 deleterious(0.04) benign(0.045) TCGA-BR-8487-01 16 81161457 81161457 G A PKD1L2 RNA 0.38 TCGA-BR-8487-01 16 81187706 81187707 CT - PKD1L2 RNA 0.50 TCGA-BR-8487-01 16 81942124 81942125 - G PLCG2 Frame_Shift_Ins p.K557Qfs*16 0.33 TCGA-BR-8487-01 16 81944244 81944244 G A PLCG2 Missense_Mutation p.R618H 0.16 deleterious(0.01) possibly_damaging(0.61) TCGA-BR-8487-01 16 819623 819623 C A MSLNL Missense_Mutation p.W989C 0.48 possibly_damaging(0.892) TCGA-BR-8487-01 16 83378590 83378590 G A CDH13 Missense_Mutation p.V301I 0.40 tolerated(0.14) benign(0.07) TCGA-BR-8487-01 16 83941844 83941844 T - MLYCD Frame_Shift_Del p.L253Cfs*5 0.19 TCGA-BR-8487-01 16 84075680 84075680 C T SLC38A8 Missense_Mutation p.G28D 0.14 deleterious(0) probably_damaging(0.989) TCGA-BR-8487-01 16 84158225 84158225 C T HSDL1 3'UTR 0.41 TCGA-BR-8487-01 16 84163718 84163718 G A HSDL1 Missense_Mutation p.A180V 0.08 tolerated(0.08) possibly_damaging(0.612) TCGA-BR-8487-01 16 84459366 84459366 G A ATP2C2 Silent p.S315S 0.33 TCGA-BR-8487-01 16 84691224 84691224 G A KLHL36 Missense_Mutation p.V271M 0.42 tolerated(0.11) benign(0.03) TCGA-BR-8487-01 16 85010045 85010045 C - ZDHHC7 Frame_Shift_Del p.S317Hfs*5 0.10 TCGA-BR-8487-01 16 85948113 85948113 C T IRF8 Silent p.D196D 0.29 TCGA-BR-8487-01 16 86602469 86602469 C T FOXC2 3'UTR 0.21 TCGA-BR-8487-01 16 87453429 87453429 A - ZCCHC14 Frame_Shift_Del p.L199Sfs*23 0.18 TCGA-BR-8487-01 16 88052119 88052119 G A BANP Silent p.L239L 0.36 TCGA-BR-8487-01 16 88747836 88747836 G T SNAI3 Silent p.P121P 0.43 TCGA-BR-8487-01 16 89260206 89260206 G A CDH15 Missense_Mutation p.S679N 0.32 tolerated(0.47) benign(0.215) TCGA-BR-8487-01 16 90025682 90025682 T A DEF8 Intron 0.50 TCGA-BR-8487-01 16 90038104 90038104 G A CENPBD1 Missense_Mutation p.A76V 0.69 tolerated(0.11) possibly_damaging(0.614) TCGA-BR-8487-01 16 90128476 90128476 C T PRDM7 Silent p.G245G 0.46 TCGA-BR-8487-01 16 90160865 90160865 C - TUBB8P7 RNA 0.19 TCGA-BR-8487-01 17 10447416 10447416 C T MYH2 Splice_Site p.X178_splice 0.31 TCGA-BR-8487-01 17 11520831 11520831 G A DNAH9 Silent p.R336R 0.41 TCGA-BR-8487-01 17 11784614 11784614 C T DNAH9 Missense_Mutation p.P3564S 0.42 probably_damaging(0.997) TCGA-BR-8487-01 17 1248702 1248702 G - YWHAE 3'UTR 0.34 TCGA-BR-8487-01 17 1268159 1268159 C T YWHAE Silent p.R86R 0.38 TCGA-BR-8487-01 17 1395772 1395772 G A MYO1C Nonsense_Mutation p.Q4* 0.53 TCGA-BR-8487-01 17 1538678 1538678 C - SCARF1 Frame_Shift_Del p.A623Rfs*66 0.30 TCGA-BR-8487-01 17 15522783 15522783 C T CDRT1 Missense_Mutation p.R15H 0.21 tolerated(0.07) benign(0.007) TCGA-BR-8487-01 17 1631437 1631437 C A WDR81 Missense_Mutation p.L1062M 0.15 tolerated(0.07) probably_damaging(0.958) TCGA-BR-8487-01 17 1631632 1631632 G A WDR81 Missense_Mutation p.E1127K 0.36 deleterious(0.03) benign(0.439) TCGA-BR-8487-01 17 16526942 16526942 C T ZNF624 Missense_Mutation p.D420N 0.29 tolerated(0.23) benign(0.015) TCGA-BR-8487-01 17 16843700 16843700 C - TNFRSF13B Frame_Shift_Del p.D191Ifs*30 0.25 TCGA-BR-8487-01 17 17109597 17109597 C A PLD6 Nonsense_Mutation p.G2* 0.73 TCGA-BR-8487-01 17 17250189 17250190 - C NT5M Frame_Shift_Ins p.R208Pfs*55 0.32 TCGA-BR-8487-01 17 18023437 18023437 G A MYO15A Silent p.A441A 0.41 TCGA-BR-8487-01 17 18154644 18154644 G A FLII Missense_Mutation p.P511S 0.26 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 17 18211732 18211732 T C TOP3A Missense_Mutation p.T83A 0.48 tolerated(0.16) benign(0.022) TCGA-BR-8487-01 17 19186555 19186555 C T EPN2 Silent p.T41T 0.37 TCGA-BR-8487-01 17 21319358 21319358 C T KCNJ12 Missense_Mutation p.P235L 0.20 tolerated(0.1) probably_damaging(0.927) TCGA-BR-8487-01 17 2290445 2290445 T C MNT Missense_Mutation p.H500R 0.39 deleterious_low_confidence(0) unknown(0) TCGA-BR-8487-01 17 2290577 2290577 T C MNT Missense_Mutation p.N456S 0.33 deleterious(0.04) unknown(0) TCGA-BR-8487-01 17 2324151 2324151 T G METTL16 Silent p.I312I 0.40 TCGA-BR-8487-01 17 25639361 25639361 C T WSB1 Missense_Mutation p.S411F 0.38 tolerated(0.1) benign(0.243) TCGA-BR-8487-01 17 26888587 26888587 C T PIGS Missense_Mutation p.E177K 0.43 tolerated(0.43) benign(0.145) TCGA-BR-8487-01 17 27001380 27001380 T A SUPT6H Missense_Mutation p.D63E 0.24 tolerated(0.64) unknown(0) TCGA-BR-8487-01 17 27005589 27005589 G T SUPT6H Missense_Mutation p.K381N 0.48 deleterious(0) probably_damaging(0.996) TCGA-BR-8487-01 17 27041919 27041919 C T RAB34 Splice_Site p.X259_splice 0.20 TCGA-BR-8487-01 17 27051514 27051514 A G TLCD1 3'UTR 0.22 TCGA-BR-8487-01 17 27051740 27051740 T C TLCD1 Missense_Mutation p.M178V 0.42 tolerated(0.16) benign(0.012) TCGA-BR-8487-01 17 27062255 27062255 C T NEK8 Intron 0.35 TCGA-BR-8487-01 17 27076638 27076641 TCAG - TRAF4 3'UTR 0.32 TCGA-BR-8487-01 17 27233509 27233509 C T PHF12 Missense_Mutation p.E903K 0.39 tolerated(0.39) benign(0.028) TCGA-BR-8487-01 17 27371936 27371936 G A PIPOX Silent p.A58A 0.29 TCGA-BR-8487-01 17 27942982 27942982 G C CORO6 Missense_Mutation p.A425G 0.42 tolerated(0.43) benign(0.002) TCGA-BR-8487-01 17 27943832 27943832 C T CORO6 Missense_Mutation p.D298N 0.38 tolerated(0.21) benign(0.009) TCGA-BR-8487-01 17 27948260 27948260 G A CORO6 Silent p.I60I 0.43 TCGA-BR-8487-01 17 28417587 28417587 T C EFCAB5 Missense_Mutation p.C1278R 0.40 tolerated(0.2) benign(0) TCGA-BR-8487-01 17 28772928 28772930 CTC - CPD In_Frame_Del p.S924del 0.44 TCGA-BR-8487-01 17 2995926 2995926 C T OR1D2 Missense_Mutation p.R122H 0.40 deleterious(0.01) benign(0.052) TCGA-BR-8487-01 17 3030645 3030645 G A OR1G1 Silent p.S67S 0.35 TCGA-BR-8487-01 17 30348616 30348616 C T LRRC37B Missense_Mutation p.R151C 0.24 deleterious(0) possibly_damaging(0.876) TCGA-BR-8487-01 17 30815228 30815228 C T CDK5R1 Missense_Mutation p.T197M 0.31 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 17 33310486 33310486 A - LIG3 Frame_Shift_Del p.I157Sfs*21 0.31 TCGA-BR-8487-01 17 33326360 33326360 C T LIG3 Silent p.Y716Y 0.31 TCGA-BR-8487-01 17 33479993 33479993 C T UNC45B Missense_Mutation p.R155W 0.30 deleterious(0) benign(0.393) TCGA-BR-8487-01 17 3349889 3349889 A G SPATA22 Missense_Mutation p.S227P 0.40 tolerated(0.42) benign(0.009) TCGA-BR-8487-01 17 34207248 34207248 G A CCL5 Missense_Mutation p.A21V 0.22 tolerated(0.83) benign(0.016) TCGA-BR-8487-01 17 35578667 35578667 G A ACACA Silent p.L1221L 0.33 TCGA-BR-8487-01 17 35899332 35899332 C T SYNRG Missense_Mutation p.A1128T 0.19 deleterious(0.02) probably_damaging(0.996) TCGA-BR-8487-01 17 35902100 35902100 A T SYNRG Missense_Mutation p.L1059Q 0.47 deleterious(0) probably_damaging(0.999) TCGA-BR-8487-01 17 3628631 3628631 A G GSG2 Missense_Mutation p.S468G 0.09 tolerated(0.19) benign(0) TCGA-BR-8487-01 17 3628867 3628867 C T GSG2 Silent p.S546S 0.47 TCGA-BR-8487-01 17 3655036 3655036 G - ITGAE Frame_Shift_Del p.L601Wfs*82 0.11 TCGA-BR-8487-01 17 3660327 3660327 C T ITGAE Silent p.A374A 0.36 TCGA-BR-8487-01 17 36707421 36707421 G - SRCIN1 Frame_Shift_Del p.R978Efs*13 0.33 TCGA-BR-8487-01 17 36926744 36926744 G A PIP4K2B Missense_Mutation p.T372M 0.37 deleterious(0) probably_damaging(0.93) TCGA-BR-8487-01 17 37873670 37873670 C A ERBB2 Missense_Mutation p.P612H 0.33 tolerated(0.56) benign(0.055) TCGA-BR-8487-01 17 37922200 37922200 C T IKZF3 Missense_Mutation p.R458H 0.18 deleterious(0.01) benign(0.005) TCGA-BR-8487-01 17 37949116 37949116 T A IKZF3 Silent p.G78G 0.11 TCGA-BR-8487-01 17 38062399 38062399 C T GSDMB Missense_Mutation p.G285S 0.39 tolerated(1) benign(0.031) TCGA-BR-8487-01 17 38182445 38182446 AG - MED24 Frame_Shift_Del p.L650Vfs*2 0.22 TCGA-BR-8487-01 17 38243082 38243083 - A THRA Frame_Shift_Ins p.L236Tfs*35 0.09 TCGA-BR-8487-01 17 38345469 38345469 G A RAPGEFL1 Missense_Mutation p.R113H 0.33 deleterious(0) possibly_damaging(0.838) TCGA-BR-8487-01 17 38812661 38812661 G A KRT222 Missense_Mutation p.A294V 0.36 tolerated_low_confidence(0.39) benign(0) TCGA-BR-8487-01 17 39092691 39092692 - G KRT23 Frame_Shift_Ins p.G56Wfs*61 0.33 TCGA-BR-8487-01 17 39274012 39274012 G A KRTAP4-11 Missense_Mutation p.R186C 0.20 deleterious(0.01) unknown(0) TCGA-BR-8487-01 17 39535281 39535281 G A KRT34 Silent p.L384L 0.40 TCGA-BR-8487-01 17 39634622 39634622 C T KRT35 Silent p.Q330Q 0.20 TCGA-BR-8487-01 17 39727639 39727639 G T KRT9 Silent p.S202S 0.39 TCGA-BR-8487-01 17 39925369 39925369 C T JUP Missense_Mutation p.A187T 0.50 tolerated(0.11) benign(0.039) TCGA-BR-8487-01 17 39925702 39925702 C T JUP Missense_Mutation p.E146K 0.47 deleterious(0) possibly_damaging(0.619) TCGA-BR-8487-01 17 39975558 39975559 - C FKBP10 Frame_Shift_Ins p.G278Rfs*95 0.34 TCGA-BR-8487-01 17 39998199 39998199 G A KLHL10 Missense_Mutation p.D107N 0.26 tolerated(0.07) benign(0.057) TCGA-BR-8487-01 17 40312113 40312113 G - KCNH4 Frame_Shift_Del p.P1000Qfs*6 0.31 TCGA-BR-8487-01 17 40375477 40375477 G A STAT5B Missense_Mutation p.T158I 0.22 deleterious(0) benign(0.334) TCGA-BR-8487-01 17 40453399 40453399 C - STAT5A Frame_Shift_Del p.Q368Rfs*2 0.23 TCGA-BR-8487-01 17 40735516 40735516 C A FAM134C Missense_Mutation p.Q270H 0.25 tolerated(0.06) possibly_damaging(0.814) TCGA-BR-8487-01 17 40825491 40825491 C - PLEKHH3 Frame_Shift_Del p.V192Wfs*6 0.35 TCGA-BR-8487-01 17 40947844 40947844 G A WNK4 Missense_Mutation p.R1075H 0.44 deleterious(0.04) probably_damaging(0.955) TCGA-BR-8487-01 17 41004852 41004852 G A AOC3 Missense_Mutation p.A498T 0.13 tolerated(0.31) benign(0.211) TCGA-BR-8487-01 17 41006589 41006589 C T AOC3 Silent p.A575A 0.15 TCGA-BR-8487-01 17 41019922 41019922 A G AOC4P RNA 0.10 TCGA-BR-8487-01 17 41370020 41370020 C - TMEM106A 3'UTR 0.21 TCGA-BR-8487-01 17 41477713 41477713 C - ARL4D 3'UTR 0.36 TCGA-BR-8487-01 17 41891581 41891581 G A MPP3 Silent p.R386R 0.43 TCGA-BR-8487-01 17 41907096 41907096 G A MPP3 Missense_Mutation p.P123S 0.32 deleterious(0.02) probably_damaging(1) TCGA-BR-8487-01 17 42161219 42161219 G T HDAC5 Missense_Mutation p.P771H 0.15 tolerated(0.13) possibly_damaging(0.551) TCGA-BR-8487-01 17 42162397 42162397 T G HDAC5 Missense_Mutation p.K727T 0.45 deleterious(0.01) benign(0.068) TCGA-BR-8487-01 17 42165014 42165014 C A HDAC5 Missense_Mutation p.E551D 0.42 tolerated(0.05) probably_damaging(0.979) TCGA-BR-8487-01 17 42239404 42239404 A G C17orf53 3'UTR 0.42 TCGA-BR-8487-01 17 42268425 42268425 C T TMUB2 3'UTR 0.33 TCGA-BR-8487-01 17 42290299 42290299 T C UBTF Missense_Mutation p.H183R 0.42 deleterious(0.04) possibly_damaging(0.754) TCGA-BR-8487-01 17 42328618 42328618 G A SLC4A1 Missense_Mutation p.A855V 0.09 tolerated(0.06) benign(0.037) TCGA-BR-8487-01 17 42453457 42453457 T C ITGA2B Missense_Mutation p.Y815C 0.41 deleterious(0) probably_damaging(0.999) TCGA-BR-8487-01 17 42818725 42818725 T C DBF4B Silent p.H245H 0.40 TCGA-BR-8487-01 17 42940144 42940144 G A EFTUD2 Missense_Mutation p.T515I 0.36 deleterious(0) possibly_damaging(0.87) TCGA-BR-8487-01 17 43318567 43318567 C T FMNL1 Silent p.S434S 0.28 TCGA-BR-8487-01 17 43332690 43332690 G A SPATA32 Nonsense_Mutation p.R287* 0.31 TCGA-BR-8487-01 17 43333435 43333435 C A SPATA32 Missense_Mutation p.E38D 0.33 tolerated(0.17) possibly_damaging(0.866) TCGA-BR-8487-01 17 43363912 43363912 G A MAP3K14 RNA 0.12 TCGA-BR-8487-01 17 44110528 44110528 C T KANSL1 Missense_Mutation p.A919T 0.26 tolerated(0.44) benign(0.022) TCGA-BR-8487-01 17 44115995 44115995 G T KANSL1 Missense_Mutation p.P817H 0.39 deleterious(0) benign(0.286) TCGA-BR-8487-01 17 4436551 4436551 G A SPNS2 Missense_Mutation p.A368T 0.11 tolerated(0.08) probably_damaging(0.999) TCGA-BR-8487-01 17 4437134 4437134 G A SPNS2 Missense_Mutation p.A444T 0.32 tolerated(0.15) benign(0.038) TCGA-BR-8487-01 17 4442644 4442644 A T MYBBP1A Intron 0.21 TCGA-BR-8487-01 17 45219283 45219283 T C CDC27 Missense_Mutation p.Y502C 0.22 deleterious(0) probably_damaging(0.982) TCGA-BR-8487-01 17 45471395 45471395 A - EFCAB13 Frame_Shift_Del p.V580* 0.36 TCGA-BR-8487-01 17 46128959 46128959 C - NFE2L1 Frame_Shift_Del p.P162Qfs*6 0.29 TCGA-BR-8487-01 17 46189966 46189966 C T SNX11 Nonsense_Mutation p.R25* 0.37 TCGA-BR-8487-01 17 46629702 46629702 G A HOXB3 Silent p.G45G 0.37 TCGA-BR-8487-01 17 46703540 46703540 C T HOXB9 Missense_Mutation p.G31D 0.52 tolerated(0.09) possibly_damaging(0.878) TCGA-BR-8487-01 17 46862565 46862565 T C TTLL6 Splice_Site p.X588_splice 0.12 TCGA-BR-8487-01 17 4789868 4789868 G A MINK1 Missense_Mutation p.R299H 0.42 deleterious(0.05) benign(0.381) TCGA-BR-8487-01 17 48166758 48166758 C T ITGA3 3'UTR 0.36 TCGA-BR-8487-01 17 48269838 48269838 G T COL1A1 Missense_Mutation p.Q661K 0.32 unknown(0) TCGA-BR-8487-01 17 48433967 48433967 C - XYLT2 Frame_Shift_Del p.G529Afs*78 0.36 TCGA-BR-8487-01 17 48458214 48458214 C T EME1 Missense_Mutation p.R556C 0.21 deleterious(0.02) possibly_damaging(0.876) TCGA-BR-8487-01 17 48692727 48692727 C A CACNA1G Missense_Mutation p.Q1589K 0.49 deleterious(0.05) probably_damaging(0.913) TCGA-BR-8487-01 17 48753397 48753397 C T ABCC3 Nonsense_Mutation p.Q1005* 0.41 TCGA-BR-8487-01 17 49247383 49247383 G A NME1-NME2 Missense_Mutation p.R220H 0.24 deleterious(0.02) probably_damaging(0.977) TCGA-BR-8487-01 17 5009276 5009276 C A ZNF232 Missense_Mutation p.G393V 0.49 deleterious(0) probably_damaging(0.968) TCGA-BR-8487-01 17 51901613 51901613 G T KIF2B Missense_Mutation p.G407W 0.24 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 17 54672213 54672213 G A NOG Missense_Mutation p.R210H 0.41 tolerated(0.13) benign(0.339) TCGA-BR-8487-01 17 55019424 55019424 A G COIL Missense_Mutation p.V540A 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8487-01 17 55183827 55183827 T C AKAP1 Silent p.N334N 0.36 TCGA-BR-8487-01 17 55478773 55478773 G A MSI2 Missense_Mutation p.G116R 0.28 deleterious(0.01) probably_damaging(0.998) TCGA-BR-8487-01 17 56274428 56274428 C T EPX Silent p.D310D 0.40 TCGA-BR-8487-01 17 56435590 56435590 T C RNF43 Missense_Mutation p.D516G 0.07 tolerated(0.47) benign(0.003) TCGA-BR-8487-01 17 57057445 57057445 G A PPM1E Missense_Mutation p.V441M 0.11 tolerated(0.06) possibly_damaging(0.858) TCGA-BR-8487-01 17 57654702 57654702 C T DHX40 Missense_Mutation p.T350M 0.31 deleterious(0) probably_damaging(0.999) TCGA-BR-8487-01 17 58121401 58121401 G T HEATR6 Silent p.A1023A 0.32 TCGA-BR-8487-01 17 58147144 58147144 C T HEATR6 Silent p.P289P 0.30 TCGA-BR-8487-01 17 58740439 58740439 T - PPM1D Frame_Shift_Del p.L450* 0.29 TCGA-BR-8487-01 17 59967232 59967232 C T INTS2 Silent p.Q641Q 0.64 TCGA-BR-8487-01 17 60088303 60088303 G A MED13 Silent p.T525T 0.29 TCGA-BR-8487-01 17 60111269 60111269 T - MED13 Frame_Shift_Del p.K231Nfs*2 0.20 TCGA-BR-8487-01 17 60522297 60522298 - A METTL2A Frame_Shift_Ins p.G306Rfs*13 0.31 TCGA-BR-8487-01 17 60753167 60753167 G A MRC2 Missense_Mutation p.S529N 0.37 deleterious(0.02) possibly_damaging(0.562) TCGA-BR-8487-01 17 61571754 61571754 C - ACE Frame_Shift_Del p.P1103Qfs*69 0.29 TCGA-BR-8487-01 17 61766937 61766937 A G MAP3K3 Missense_Mutation p.Q333R 0.39 tolerated(0.09) probably_damaging(0.974) TCGA-BR-8487-01 17 61886281 61886281 G - DDX42 Frame_Shift_Del p.A377Qfs*11 0.27 TCGA-BR-8487-01 17 61908745 61908745 G A PSMC5 Missense_Mutation p.R310H 0.39 deleterious(0.04) benign(0.088) TCGA-BR-8487-01 17 62746718 62746718 C T hsa-mir-6080 RNA 0.37 TCGA-BR-8487-01 17 62818372 62818372 G A RNU7-115P 3'Flank 0.44 TCGA-BR-8487-01 17 6350849 6350849 C T FAM64A Missense_Mutation p.R121W 0.34 deleterious(0) probably_damaging(0.998) TCGA-BR-8487-01 17 64219843 64219843 A G APOH Missense_Mutation p.W130R 0.35 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 17 64224206 64224206 C T APOH Missense_Mutation p.R58Q 0.52 tolerated(0.4) benign(0.007) TCGA-BR-8487-01 17 6493207 6493207 G A KIAA0753 Missense_Mutation p.P893L 0.20 tolerated(0.21) benign(0.03) TCGA-BR-8487-01 17 651080 651082 TTC - GEMIN4 In_Frame_Del p.K68del 0.21 TCGA-BR-8487-01 17 67190626 67190626 A - ABCA10 Frame_Shift_Del p.F415Lfs*23 0.28 TCGA-BR-8487-01 17 6913203 6913203 G T AC027763.2 Silent p.T3T 0.28 TCGA-BR-8487-01 17 695312 695312 A T RNMTL1 3'UTR 0.36 TCGA-BR-8487-01 17 70117712 70117714 GAA - SOX9 In_Frame_Del p.K62del 0.35 TCGA-BR-8487-01 17 7163530 7163530 C - CLDN7 3'UTR 0.39 TCGA-BR-8487-01 17 7187346 7187346 C A SLC2A4 Missense_Mutation p.L168M 0.16 deleterious(0.02) probably_damaging(0.967) TCGA-BR-8487-01 17 7226439 7226439 A G NEURL4 Silent p.G807G 0.25 TCGA-BR-8487-01 17 72308361 72308361 C T DNAI2 Missense_Mutation p.P572S 0.27 tolerated(0.46) benign(0.039) TCGA-BR-8487-01 17 72351078 72351078 C T KIF19 Missense_Mutation p.T955M 0.45 deleterious(0.04) benign(0.287) TCGA-BR-8487-01 17 72443194 72443194 G A GPRC5C 3'UTR 0.41 TCGA-BR-8487-01 17 72848528 72848528 G T GRIN2C Missense_Mutation p.P208T 0.36 tolerated(0.53) benign(0.005) TCGA-BR-8487-01 17 72858788 72858788 G T FDXR 3'UTR 0.36 TCGA-BR-8487-01 17 72861876 72861876 C T FDXR Missense_Mutation p.A235T 0.38 deleterious(0.02) probably_damaging(0.945) TCGA-BR-8487-01 17 72927105 72927105 G A OTOP2 Missense_Mutation p.A459T 0.37 tolerated(0.5) benign(0.003) TCGA-BR-8487-01 17 72956280 72956280 G A HID1 Silent p.Y264Y 0.43 TCGA-BR-8487-01 17 73230754 73230754 T C NUP85 Silent p.R546R 0.07 TCGA-BR-8487-01 17 73494345 73494345 C A KIAA0195 Missense_Mutation p.S1193R 0.43 tolerated(0.3) benign(0.003) TCGA-BR-8487-01 17 73509940 73509940 G A CASKIN2 5'UTR 0.48 TCGA-BR-8487-01 17 73565074 73565074 G A LLGL2 Silent p.T446T 0.25 TCGA-BR-8487-01 17 73729676 73729676 C T ITGB4 Silent p.C520C 0.14 TCGA-BR-8487-01 17 73736063 73736063 G A ITGB4 Missense_Mutation p.G786D 0.43 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 17 73887136 73887136 G A TRIM65 Silent p.C426C 0.35 TCGA-BR-8487-01 17 7399666 7399666 G A POLR2A Splice_Site p.X121_splice 0.28 TCGA-BR-8487-01 17 74018608 74018608 G A EVPL Silent p.C164C 0.39 TCGA-BR-8487-01 17 74073369 74073369 G A GALR2 Missense_Mutation p.D341N 0.27 deleterious_low_confidence(0.01) benign(0.086) TCGA-BR-8487-01 17 74077646 74077646 G A ZACN Silent p.A230A 0.34 TCGA-BR-8487-01 17 74133832 74133833 - G FOXJ1 Frame_Shift_Ins p.S290Qfs*12 0.33 TCGA-BR-8487-01 17 74274105 74274105 C T QRICH2 Silent p.L1528L 0.36 TCGA-BR-8487-01 17 74303609 74303609 C T QRICH2 5'UTR 0.33 TCGA-BR-8487-01 17 74383602 74383602 G A SPHK1 Missense_Mutation p.G450S 0.21 deleterious(0.03) benign(0.227) TCGA-BR-8487-01 17 7468815 7468815 G A SENP3 Missense_Mutation p.V376M 0.57 tolerated(0.09) benign(0.075) TCGA-BR-8487-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.26 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 17 7605096 7605096 G A WRAP53 Missense_Mutation p.R315Q 0.43 deleterious(0.03) probably_damaging(0.999) TCGA-BR-8487-01 17 76137109 76137109 G A TMC8 Silent p.A699A 0.52 TCGA-BR-8487-01 17 76200813 76200813 G A AFMID Missense_Mutation p.A129T 0.40 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 17 7640418 7640418 T - DNAH2 Frame_Shift_Del p.L339Cfs*4 0.28 TCGA-BR-8487-01 17 76430214 76430214 G A DNAH17 Missense_Mutation p.R4035C 0.39 probably_damaging(0.995) TCGA-BR-8487-01 17 76677079 76677079 G A CYTH1 Missense_Mutation p.R313W 0.12 deleterious(0) probably_damaging(0.978) TCGA-BR-8487-01 17 76704344 76704344 C A CYTH1 Splice_Site p.X36_splice 0.13 TCGA-BR-8487-01 17 7690337 7690337 G A DNAH2 Missense_Mutation p.A2197T 0.41 benign(0.02) TCGA-BR-8487-01 17 77076401 77076401 T C ENGASE Silent p.F226F 0.39 TCGA-BR-8487-01 17 7749539 7749539 C T KDM6B Missense_Mutation p.T127I 0.40 unknown(0) TCGA-BR-8487-01 17 77755692 77755692 G - CBX2 Intron 0.28 TCGA-BR-8487-01 17 77987325 77987325 G A TBC1D16 Missense_Mutation p.R8C 0.29 deleterious(0) probably_damaging(0.999) TCGA-BR-8487-01 17 78011979 78011979 C T CCDC40 Silent p.S29S 0.58 TCGA-BR-8487-01 17 78022482 78022483 AG - CCDC40 Frame_Shift_Del p.R261Sfs*7 0.15 TCGA-BR-8487-01 17 78024074 78024074 G A CCDC40 Missense_Mutation p.R384H 0.50 deleterious(0.04) benign(0.049) TCGA-BR-8487-01 17 78226455 78226455 G T SLC26A11 Missense_Mutation p.Q587H 0.10 deleterious(0.01) benign(0.002) TCGA-BR-8487-01 17 78293236 78293236 T C RNF213 Intron 0.31 TCGA-BR-8487-01 17 78337430 78337430 A G RNF213 Missense_Mutation p.M3864V 0.42 benign(0.002) TCGA-BR-8487-01 17 7834329 7834329 C T TRAPPC1 Silent p.A103A 0.46 TCGA-BR-8487-01 17 7847812 7847812 G A CNTROB Silent p.A530A 0.45 TCGA-BR-8487-01 17 7850958 7850958 A G CNTROB Missense_Mutation p.D688G 0.10 tolerated_low_confidence(0.08) benign(0.019) TCGA-BR-8487-01 17 79166624 79166624 G A AZI1 Nonsense_Mutation p.Q781* 0.39 TCGA-BR-8487-01 17 79202746 79202746 G A ENTHD2 Silent p.F520F 0.23 TCGA-BR-8487-01 17 79207478 79207478 C T ENTHD2 Silent p.P138P 0.26 TCGA-BR-8487-01 17 79615000 79615000 C T TSPAN10 Silent p.R248R 0.37 TCGA-BR-8487-01 17 79639138 79639138 C - CCDC137 Frame_Shift_Del p.P206Qfs*3 0.26 TCGA-BR-8487-01 17 79668137 79668137 G A HGS Silent p.A733A 0.39 TCGA-BR-8487-01 17 79792733 79792733 G T PPP1R27 Missense_Mutation p.L33M 0.45 deleterious(0.01) possibly_damaging(0.736) TCGA-BR-8487-01 17 79985564 79985564 G - LRRC45 Frame_Shift_Del p.R283Lfs*2 0.30 TCGA-BR-8487-01 17 80044984 80044984 C A FASN Silent p.T1123T 0.23 TCGA-BR-8487-01 17 80059474 80059474 C - FASN 5'Flank 0.34 TCGA-BR-8487-01 17 80115690 80115690 G A CCDC57 Silent p.H725H 0.44 TCGA-BR-8487-01 17 80195293 80195293 G A SLC16A3 Missense_Mutation p.R216H 0.31 tolerated(0.06) benign(0.015) TCGA-BR-8487-01 17 80543922 80543922 C T FOXK2 Silent p.V474V 0.26 TCGA-BR-8487-01 17 8192722 8192722 A - RANGRF Frame_Shift_Del p.N115Tfs*4 0.29 TCGA-BR-8487-01 17 8195898 8195898 T C SLC25A35 Silent p.T128T 0.39 TCGA-BR-8487-01 17 8449960 8449960 G A MYH10 Missense_Mutation p.L394F 0.19 benign(0.081) TCGA-BR-8487-01 17 8633476 8633476 T - CCDC42 Frame_Shift_Del p.K308Rfs*24 0.30 TCGA-BR-8487-01 17 9408353 9408353 A G STX8 Splice_Site p.X150_splice 0.09 TCGA-BR-8487-01 17 970392 970392 C T ABR Silent p.V369V 0.59 TCGA-BR-8487-01 18 12014330 12014330 G A IMPA2 Missense_Mutation p.A150T 0.33 deleterious(0) probably_damaging(0.973) TCGA-BR-8487-01 18 12326166 12326166 C T TUBB6 3'UTR 0.40 TCGA-BR-8487-01 18 13068413 13068413 G A CEP192 Missense_Mutation p.S1605N 0.33 tolerated(0.08) benign(0.222) TCGA-BR-8487-01 18 13387525 13387525 C G LDLRAD4 5'UTR 0.33 TCGA-BR-8487-01 18 13387685 13387685 C T LDLRAD4 5'UTR 0.35 TCGA-BR-8487-01 18 13682035 13682035 G A FAM210A Silent p.R14R 0.36 TCGA-BR-8487-01 18 13884978 13884978 C T MC2R Silent p.S180S 0.40 TCGA-BR-8487-01 18 18547719 18547719 C T ROCK1 Missense_Mutation p.M1062I 0.09 tolerated(0.11) benign(0.023) TCGA-BR-8487-01 18 18564319 18564319 G A ROCK1 Missense_Mutation p.L828F 0.37 deleterious(0.03) benign(0.318) TCGA-BR-8487-01 18 18619444 18619444 G A ROCK1 Missense_Mutation p.T347M 0.27 deleterious(0) possibly_damaging(0.535) TCGA-BR-8487-01 18 19192389 19192389 G T SNRPD1 5'UTR 0.06 TCGA-BR-8487-01 18 19995553 19995553 G - CTAGE1 Frame_Shift_Del p.P741Qfs*15 0.13 TCGA-BR-8487-01 18 21218839 21218839 C T ANKRD29 Missense_Mutation p.G102R 0.13 deleterious(0.01) probably_damaging(1) TCGA-BR-8487-01 18 21761173 21761173 T C OSBPL1A Missense_Mutation p.Y583C 0.31 deleterious(0) probably_damaging(0.998) TCGA-BR-8487-01 18 28914054 28914054 G A DSG1 Silent p.E298E 0.08 TCGA-BR-8487-01 18 29126573 29126573 C T DSG2 Missense_Mutation p.T1075M 0.26 tolerated(0.34) benign(0.003) TCGA-BR-8487-01 18 29693731 29693731 T C RNF138 Silent p.H100H 0.18 TCGA-BR-8487-01 18 30092740 30092740 A G WBP11P1 RNA 0.18 TCGA-BR-8487-01 18 30260437 30260437 G A KLHL14 Missense_Mutation p.S455F 0.22 deleterious(0) probably_damaging(0.99) TCGA-BR-8487-01 18 30349862 30349862 G - KLHL14 Frame_Shift_Del p.V232Wfs*30 0.27 TCGA-BR-8487-01 18 3277796 3277796 T C MYL12B Missense_Mutation p.L127P 0.43 deleterious(0.02) possibly_damaging(0.825) TCGA-BR-8487-01 18 33613688 33613688 A G RPRD1A Silent p.A88A 0.10 TCGA-BR-8487-01 18 33785130 33785130 C A MOCOS Missense_Mutation p.P370H 0.13 deleterious(0.03) benign(0.309) TCGA-BR-8487-01 18 34205516 34205516 C - FHOD3 Frame_Shift_Del p.S336Vfs*138 0.38 TCGA-BR-8487-01 18 34349257 34349257 G A FHOD3 Missense_Mutation p.D1369N 0.42 deleterious(0.04) benign(0.008) TCGA-BR-8487-01 18 34853000 34853000 C T CELF4 Missense_Mutation p.A310T 0.40 tolerated(0.93) possibly_damaging(0.747) TCGA-BR-8487-01 18 43311062 43311062 A G SLC14A1 Silent p.G134G 0.17 TCGA-BR-8487-01 18 43565381 43565381 T C PSTPIP2 3'UTR 0.16 TCGA-BR-8487-01 18 44260339 44260339 T C ST8SIA5 Missense_Mutation p.D266G 0.42 probably_damaging(1) TCGA-BR-8487-01 18 47110024 47110024 C T LIPG Missense_Mutation p.A419V 0.42 tolerated(0.17) benign(0.005) TCGA-BR-8487-01 18 47463722 47463722 G A MYO5B Missense_Mutation p.P600S 0.43 tolerated(0.65) benign(0.011) TCGA-BR-8487-01 18 47800112 47800112 G A MBD1 Missense_Mutation p.P423L 0.46 deleterious(0.02) benign(0.096) TCGA-BR-8487-01 18 48513066 48513066 C T ELAC1 Missense_Mutation p.P235S 0.25 deleterious(0.02) probably_damaging(0.913) TCGA-BR-8487-01 18 48603108 48603108 C A SMAD4 Missense_Mutation p.P470H 0.30 deleterious(0) probably_damaging(0.971) TCGA-BR-8487-01 18 51880423 51880423 C T STARD6 Splice_Site p.X47_splice 0.16 TCGA-BR-8487-01 18 52556537 52556537 C T RAB27B Nonsense_Mutation p.R184* 0.09 TCGA-BR-8487-01 18 5489033 5489033 G A EPB41L3 Silent p.A50A 0.45 TCGA-BR-8487-01 18 55103818 55103818 G A ONECUT2 Silent p.S290S 0.33 TCGA-BR-8487-01 18 56203450 56203450 T C ALPK2 Silent p.V1323V 0.43 TCGA-BR-8487-01 18 56204901 56204901 T C ALPK2 Missense_Mutation p.T840A 0.50 tolerated(0.32) benign(0) TCGA-BR-8487-01 18 56892894 56892894 C A GRP Missense_Mutation p.L104M 0.44 tolerated(0.17) probably_damaging(0.994) TCGA-BR-8487-01 18 56892898 56892898 G A GRP Missense_Mutation p.G105D 0.18 tolerated(0.2) probably_damaging(0.962) TCGA-BR-8487-01 18 56964004 56964004 T C CPLX4 Missense_Mutation p.T137A 0.39 tolerated(1) benign(0.002) TCGA-BR-8487-01 18 580690 580690 G A CETN1 Silent p.T94T 0.34 TCGA-BR-8487-01 18 59206373 59206373 G T CDH20 Nonsense_Mutation p.G509* 0.36 TCGA-BR-8487-01 18 60985558 60985558 C A BCL2 Missense_Mutation p.E114D 0.10 tolerated(0.45) possibly_damaging(0.464) TCGA-BR-8487-01 18 61390517 61390517 G A SERPINB11 Missense_Mutation p.A355T 0.36 tolerated(0.63) benign(0.021) TCGA-BR-8487-01 18 6995425 6995425 A T LAMA1 Missense_Mutation p.N1609K 0.37 tolerated(0.65) benign(0.033) TCGA-BR-8487-01 18 7037643 7037643 G A LAMA1 Silent p.T557T 0.33 TCGA-BR-8487-01 18 74091570 74091570 G A ZNF516 Missense_Mutation p.R834W 0.32 deleterious(0) probably_damaging(0.999) TCGA-BR-8487-01 18 74592217 74592217 C T ZNF236 Missense_Mutation p.P376L 0.36 tolerated(0.12) benign(0.207) TCGA-BR-8487-01 18 74639294 74639294 C T ZNF236 Missense_Mutation p.T1410M 0.10 deleterious(0) possibly_damaging(0.684) TCGA-BR-8487-01 18 76754387 76754387 A G SALL3 Missense_Mutation p.D799G 0.39 deleterious(0) probably_damaging(0.961) TCGA-BR-8487-01 18 76757282 76757282 C T SALL3 Missense_Mutation p.T1288M 0.40 deleterious(0.02) possibly_damaging(0.886) TCGA-BR-8487-01 18 77623816 77623816 G A KCNG2 Missense_Mutation p.R50H 0.45 tolerated(0.18) benign(0.019) TCGA-BR-8487-01 18 77623926 77623926 G A KCNG2 Missense_Mutation p.A87T 0.33 tolerated(0.34) benign(0.141) TCGA-BR-8487-01 18 77659196 77659196 C T KCNG2 Missense_Mutation p.P261S 0.20 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 18 77659756 77659756 C T KCNG2 Silent p.P447P 0.33 TCGA-BR-8487-01 18 77804249 77804249 G A RBFA Missense_Mutation p.R205Q 0.31 tolerated(0.12) benign(0.058) TCGA-BR-8487-01 18 77894261 77894261 C - ADNP2 Frame_Shift_Del p.P324Lfs*8 0.34 TCGA-BR-8487-01 18 77960807 77960807 C T PARD6G Silent p.A27A 0.43 TCGA-BR-8487-01 18 8825900 8825900 G A SOGA2 Silent p.L1464L 0.56 TCGA-BR-8487-01 18 9583131 9583131 C T PPP4R1 Missense_Mutation p.S301N 0.33 tolerated(0.06) benign(0.049) TCGA-BR-8487-01 18 9954310 9954310 T - VAPA 3'UTR 0.28 TCGA-BR-8487-01 19 10367427 10367427 G A MRPL4 Missense_Mutation p.G124D 0.37 deleterious(0) probably_damaging(0.999) TCGA-BR-8487-01 19 10476274 10476274 C - TYK2 Frame_Shift_Del p.P312Qfs*7 0.24 TCGA-BR-8487-01 19 1068656 1068656 G A HMHA1 Missense_Mutation p.V128I 0.33 tolerated(0.66) benign(0.003) TCGA-BR-8487-01 19 10747092 10747092 C T SLC44A2 Silent p.L443L 0.11 TCGA-BR-8487-01 19 11096942 11096942 A T SMARCA4 Missense_Mutation p.M145L 0.34 benign(0) TCGA-BR-8487-01 19 11100064 11100064 G A SMARCA4 Missense_Mutation p.R397Q 0.33 possibly_damaging(0.768) TCGA-BR-8487-01 19 11144499 11144499 G A SMARCA4 Silent p.P1277P 0.53 TCGA-BR-8487-01 19 11218190 11218190 G A LDLR Missense_Mutation p.G314R 0.14 tolerated(0.06) benign(0.091) TCGA-BR-8487-01 19 11241983 11241983 C T LDLR Silent p.D858D 0.33 TCGA-BR-8487-01 19 11280723 11280723 C T KANK2 Splice_Site p.X812_splice 0.36 TCGA-BR-8487-01 19 11548910 11548910 G A PRKCSH Silent p.E105E 0.09 TCGA-BR-8487-01 19 11597605 11597605 G A ZNF653 Silent p.Y478Y 0.52 TCGA-BR-8487-01 19 11618361 11618361 G A ECSIT Missense_Mutation p.P321L 0.41 tolerated(0.08) benign(0.001) TCGA-BR-8487-01 19 11660379 11660379 G A CNN1 Silent p.A221A 0.10 TCGA-BR-8487-01 19 12128716 12128716 A G ZNF433 Missense_Mutation p.Y59H 0.50 tolerated(0.21) possibly_damaging(0.825) TCGA-BR-8487-01 19 12155504 12155504 A - ZNF878 Frame_Shift_Del p.S238Lfs*5 0.09 TCGA-BR-8487-01 19 1241936 1241936 G A ATP5D Silent p.P29P 0.14 TCGA-BR-8487-01 19 12691154 12691154 G A ZNF490 3'UTR 0.39 TCGA-BR-8487-01 19 12758380 12758380 C A MAN2B1 Silent p.S899S 0.31 TCGA-BR-8487-01 19 12774228 12774228 A G MAN2B1 Missense_Mutation p.V271A 0.42 tolerated(0.42) benign(0.026) TCGA-BR-8487-01 19 12779388 12779388 C T WDR83OS Missense_Mutation p.S67N 0.44 deleterious(0.01) probably_damaging(0.995) TCGA-BR-8487-01 19 12882020 12882020 C T HOOK2 Silent p.L238L 0.45 TCGA-BR-8487-01 19 12918244 12918244 A G RNASEH2A Missense_Mutation p.N112S 0.40 tolerated(0.8) benign(0.026) TCGA-BR-8487-01 19 13223557 13223557 C T TRMT1 Missense_Mutation p.G278R 0.26 deleterious(0) probably_damaging(0.963) TCGA-BR-8487-01 19 13363878 13363878 C T CACNA1A Missense_Mutation p.R1598Q 0.39 benign(0.042) TCGA-BR-8487-01 19 13418941 13418941 C T CACNA1A Missense_Mutation p.G636S 0.09 probably_damaging(0.994) TCGA-BR-8487-01 19 13869968 13869968 G C CCDC130 Missense_Mutation p.G152A 0.16 deleterious(0) probably_damaging(0.998) TCGA-BR-8487-01 19 13882968 13882968 C - MRI1 Frame_Shift_Del p.H330Tfs*24 0.29 TCGA-BR-8487-01 19 13947256 13947256 G - ZSWIM4 3'Flank 0.23 TCGA-BR-8487-01 19 13991390 13991390 G A NANOS3 3'Flank 0.18 TCGA-BR-8487-01 19 14000445 14000445 G - C19orf57 Frame_Shift_Del p.G409Afs*4 0.20 TCGA-BR-8487-01 19 14038730 14038730 G - CC2D1A Frame_Shift_Del p.R783Dfs*4 0.22 TCGA-BR-8487-01 19 14281569 14281569 C T LPHN1 Missense_Mutation p.G107S 0.32 tolerated(0.15) probably_damaging(0.998) TCGA-BR-8487-01 19 1430254 1430254 C - DAZAP1 Frame_Shift_Del p.P257Rfs*78 0.34 TCGA-BR-8487-01 19 1483346 1483346 C T PCSK4 Missense_Mutation p.R503H 0.19 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 19 15072900 15072900 A G SLC1A6 Silent p.G283G 0.32 TCGA-BR-8487-01 19 15227029 15227029 C T ILVBL Missense_Mutation p.G469R 0.29 deleterious(0) probably_damaging(0.999) TCGA-BR-8487-01 19 15311612 15311612 C G NOTCH3 Silent p.G35G 0.30 TCGA-BR-8487-01 19 15349943 15349943 G A BRD4 Missense_Mutation p.R1237C 0.35 possibly_damaging(0.689) TCGA-BR-8487-01 19 15529826 15529827 - CA AKAP8L 5'UTR 0.12 TCGA-BR-8487-01 19 15535132 15535132 T C WIZ Missense_Mutation p.D696G 0.35 tolerated(0.19) benign(0.004) TCGA-BR-8487-01 19 15538114 15538114 C T WIZ Missense_Mutation p.A254T 0.39 tolerated(0.14) probably_damaging(0.998) TCGA-BR-8487-01 19 1556759 1556759 C T MEX3D Silent p.T253T 0.44 TCGA-BR-8487-01 19 16024702 16024702 G A CYP4F11 Missense_Mutation p.A472V 0.40 deleterious(0.04) benign(0.003) TCGA-BR-8487-01 19 16059877 16059877 C - OR10H4 Frame_Shift_Del p.Q22Sfs*13 0.28 TCGA-BR-8487-01 19 16504805 16504805 C T EPS15L1 Silent p.P641P 0.34 TCGA-BR-8487-01 19 16646277 16646277 G A CHERP Silent p.L124L 0.39 TCGA-BR-8487-01 19 16860883 16860883 A T NWD1 Missense_Mutation p.D477V 0.33 tolerated(0.1) benign(0.043) TCGA-BR-8487-01 19 17311596 17311596 C T MYO9B Silent p.N1507N 0.43 TCGA-BR-8487-01 19 17836977 17836977 A G MAP1S Missense_Mutation p.T262A 0.38 tolerated(0.05) probably_damaging(0.987) TCGA-BR-8487-01 19 18119242 18119242 C T ARRDC2 Silent p.A41A 0.33 TCGA-BR-8487-01 19 18391291 18391291 C T JUND Missense_Mutation p.G335D 0.43 deleterious(0) possibly_damaging(0.902) TCGA-BR-8487-01 19 18649226 18649226 G A FKBP8 Missense_Mutation p.P191L 0.30 deleterious(0.05) benign(0.332) TCGA-BR-8487-01 19 18652683 18652683 G A FKBP8 Missense_Mutation p.A33V 0.41 deleterious_low_confidence(0.02) benign(0.06) TCGA-BR-8487-01 19 18887993 18887993 C - CRTC1 Frame_Shift_Del p.S588Afs*6 0.42 TCGA-BR-8487-01 19 18888162 18888162 C T CRTC1 Silent p.T641T 0.38 TCGA-BR-8487-01 19 18990153 18990153 G A CERS1 Missense_Mutation p.A266V 0.38 tolerated(0.08) benign(0.424) TCGA-BR-8487-01 19 19042329 19042329 T C HOMER3 Missense_Mutation p.T266A 0.34 tolerated(1) probably_damaging(0.986) TCGA-BR-8487-01 19 19221753 19221753 G - SLC25A42 3'UTR 0.36 TCGA-BR-8487-01 19 19655251 19655251 G A CILP2 Missense_Mutation p.E633K 0.23 deleterious(0.01) benign(0.184) TCGA-BR-8487-01 19 19680322 19680322 T C PBX4 Missense_Mutation p.N235S 0.40 deleterious(0.01) probably_damaging(0.951) TCGA-BR-8487-01 19 19737709 19737709 G A LPAR2 Missense_Mutation p.R129W 0.53 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 19 19766239 19766239 G A ATP13A1 Missense_Mutation p.R474C 0.08 deleterious(0) probably_damaging(0.997) TCGA-BR-8487-01 19 1986508 1986508 G - BTBD2 Frame_Shift_Del p.E520Rfs*20 0.18 TCGA-BR-8487-01 19 1993130 1993130 C T BTBD2 Missense_Mutation p.M191I 0.33 tolerated(0.06) possibly_damaging(0.862) TCGA-BR-8487-01 19 2041092 2041092 C A MKNK2 Missense_Mutation p.A353S 0.49 tolerated(0.06) probably_damaging(0.962) TCGA-BR-8487-01 19 20728495 20728496 - T ZNF737 Frame_Shift_Ins p.P172Tfs*12 0.33 TCGA-BR-8487-01 19 21606876 21606876 G A ZNF493 Missense_Mutation p.R472Q 0.36 tolerated(0.78) benign(0.002) TCGA-BR-8487-01 19 21608299 21608299 T C ZNF493 3'UTR 0.45 TCGA-BR-8487-01 19 21608552 21608552 A G ZNF493 3'UTR 0.50 TCGA-BR-8487-01 19 21927839 21927839 C T ZNF100 Missense_Mutation p.E43K 0.43 deleterious(0.02) probably_damaging(0.999) TCGA-BR-8487-01 19 22271242 22271242 A G ZNF257 Silent p.K230K 0.25 TCGA-BR-8487-01 19 2272973 2272973 G A OAZ1 Missense_Mutation p.A185T 0.47 tolerated(0.2) benign(0.014) TCGA-BR-8487-01 19 2717185 2717185 G A DIRAS1 3'UTR 0.12 TCGA-BR-8487-01 19 2717476 2717476 C T DIRAS1 Missense_Mutation p.S110N 0.11 tolerated(0.77) benign(0.003) TCGA-BR-8487-01 19 2737117 2737118 AG - SLC39A3 Frame_Shift_Del p.C47Qfs*87 0.29 TCGA-BR-8487-01 19 2877612 2877612 C T ZNF556 Missense_Mutation p.T219I 0.24 tolerated(0.06) benign(0.217) TCGA-BR-8487-01 19 2993498 2993498 G A TLE6 Nonsense_Mutation p.W485* 0.50 TCGA-BR-8487-01 19 30314720 30314720 C T CCNE1 3'UTR 0.21 TCGA-BR-8487-01 19 30935266 30935266 A G ZNF536 Missense_Mutation p.D266G 0.15 tolerated(0.29) benign(0.312) TCGA-BR-8487-01 19 30936402 30936402 C T ZNF536 Nonsense_Mutation p.Q645* 0.08 TCGA-BR-8487-01 19 31039824 31039824 G A ZNF536 Missense_Mutation p.V1100M 0.32 tolerated_low_confidence(1) benign(0.003) TCGA-BR-8487-01 19 33623225 33623225 G A WDR88 Silent p.P50P 0.24 TCGA-BR-8487-01 19 33878152 33878152 G A PEPD 3'UTR 0.30 TCGA-BR-8487-01 19 35523454 35523454 C T SCN1B Silent p.C21C 0.54 TCGA-BR-8487-01 19 35616218 35616218 G A LGI4 Missense_Mutation p.A498V 0.16 tolerated(0.29) benign(0.006) TCGA-BR-8487-01 19 35715961 35715961 C T FAM187B Missense_Mutation p.V293M 0.52 tolerated(0.69) benign(0.072) TCGA-BR-8487-01 19 35758063 35758063 C A LSR Missense_Mutation p.S447Y 0.52 tolerated(0.96) benign(0) TCGA-BR-8487-01 19 36046156 36046156 G A ATP4A Silent p.G746G 0.21 TCGA-BR-8487-01 19 36105982 36105982 C T HAUS5 Silent p.R86R 0.33 TCGA-BR-8487-01 19 36214728 36214728 G - KMT2B Frame_Shift_Del p.R1055Gfs*127 0.20 TCGA-BR-8487-01 19 36268609 36268610 - G ARHGAP33 Frame_Shift_Ins p.P26Afs*23 0.31 TCGA-BR-8487-01 19 36293939 36293939 C T PRODH2 Missense_Mutation p.R424H 0.20 tolerated(0.37) benign(0.013) TCGA-BR-8487-01 19 36352086 36352087 TG - KIRREL2 Frame_Shift_Del p.C375Qfs*3 0.36 TCGA-BR-8487-01 19 36431147 36431147 T A LRFN3 Missense_Mutation p.S274T 0.60 tolerated(0.33) benign(0.175) TCGA-BR-8487-01 19 36435683 36435683 C T LRFN3 Missense_Mutation p.S550L 0.62 deleterious(0) possibly_damaging(0.705) TCGA-BR-8487-01 19 36883660 36883660 G A ZFP82 Missense_Mutation p.H528Y 0.48 deleterious(0) probably_damaging(0.994) TCGA-BR-8487-01 19 37368503 37368504 AT - ZNF345 Frame_Shift_Del p.I259Mfs*2 0.40 TCGA-BR-8487-01 19 3740615 3740615 C T TJP3 Missense_Mutation p.A575V 0.40 tolerated(0.14) benign(0.003) TCGA-BR-8487-01 19 37643977 37643977 C T ZNF585A Missense_Mutation p.C220Y 0.50 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 19 3767415 3767415 C - MRPL54 3'UTR 0.27 TCGA-BR-8487-01 19 37676233 37676233 G C ZNF585B Missense_Mutation p.H736D 0.25 deleterious(0) probably_damaging(0.999) TCGA-BR-8487-01 19 3778509 3778509 T - MATK Frame_Shift_Del p.M429Cfs*3 0.18 TCGA-BR-8487-01 19 38572477 38572477 A G SIPA1L3 Missense_Mutation p.E91G 0.16 deleterious(0) benign(0.184) TCGA-BR-8487-01 19 38795966 38795966 A G YIF1B 3'UTR 0.49 TCGA-BR-8487-01 19 38881062 38881062 G - SPRED3 Frame_Shift_Del p.A43Pfs*24 0.69 TCGA-BR-8487-01 19 38901993 38901993 C T RASGRP4 Missense_Mutation p.R570H 0.31 tolerated(0.19) probably_damaging(1) TCGA-BR-8487-01 19 38980033 38980033 T C RYR1 Silent p.L1922L 0.17 TCGA-BR-8487-01 19 39002998 39002998 C T RYR1 Missense_Mutation p.S3116L 0.24 benign(0.031) TCGA-BR-8487-01 19 39406305 39406305 A G SARS2 Missense_Mutation p.Y502H 0.11 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 19 39691347 39691347 G A NCCRP1 Missense_Mutation p.R260Q 0.26 tolerated(0.28) benign(0.034) TCGA-BR-8487-01 19 39799138 39799138 G A LRFN1 Missense_Mutation p.A484V 0.25 tolerated(0.73) possibly_damaging(0.683) TCGA-BR-8487-01 19 39867347 39867347 C T SAMD4B Silent p.N340N 0.19 TCGA-BR-8487-01 19 39899071 39899071 C - ZFP36 Frame_Shift_Del p.L246Wfs*126 0.20 TCGA-BR-8487-01 19 40325193 40325193 G - FBL Frame_Shift_Del p.K318Rfs*2 0.22 TCGA-BR-8487-01 19 40411750 40411750 A G FCGBP Missense_Mutation p.V1293A 0.55 probably_damaging(0.999) TCGA-BR-8487-01 19 40419887 40419887 G A FCGBP Missense_Mutation p.T1036M 0.31 probably_damaging(0.962) TCGA-BR-8487-01 19 40723198 40723198 C - TTC9B Frame_Shift_Del p.G169Afs*45 0.35 TCGA-BR-8487-01 19 41040082 41040082 C T SPTBN4 Silent p.S1397S 0.12 TCGA-BR-8487-01 19 4117561 4117561 C T MAP2K2 Silent p.R53R 0.34 TCGA-BR-8487-01 19 41249854 41249854 G A C19orf54 Missense_Mutation p.P225L 0.22 deleterious(0.01) probably_damaging(0.997) TCGA-BR-8487-01 19 41388182 41388182 G A CYP2A7 5'UTR 0.59 TCGA-BR-8487-01 19 41762422 41762422 A G AXL Missense_Mutation p.D701G 0.55 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 19 41779901 41779901 A G HNRNPUL1 Missense_Mutation p.Q196R 0.23 tolerated(0.06) unknown(0) TCGA-BR-8487-01 19 4180893 4180893 G - SIRT6 Frame_Shift_Del p.P27Rfs*133 0.24 TCGA-BR-8487-01 19 41811617 41811617 T C HNRNPUL1 Missense_Mutation p.Y767H 0.19 deleterious_low_confidence(0) benign(0.403) TCGA-BR-8487-01 19 41822545 41822545 C T CCDC97 Silent p.H101H 0.31 TCGA-BR-8487-01 19 42584906 42584906 C A ZNF574 Silent p.A716A 0.12 TCGA-BR-8487-01 19 4262085 4262085 C T CCDC94 Missense_Mutation p.P228S 0.35 tolerated(0.31) benign(0.014) TCGA-BR-8487-01 19 42736814 42736814 C T GSK3A Silent p.P373P 0.36 TCGA-BR-8487-01 19 42791286 42791286 G A CIC Missense_Mutation p.V116M 0.10 benign(0.188) TCGA-BR-8487-01 19 42862379 42862379 G A MEGF8 Missense_Mutation p.A1632T 0.23 tolerated(0.65) benign(0.171) TCGA-BR-8487-01 19 4357345 4357345 C T MPND Silent p.D364D 0.53 TCGA-BR-8487-01 19 44047518 44047518 G T XRCC1 3'UTR 0.24 TCGA-BR-8487-01 19 44131420 44131420 G A CADM4 Missense_Mutation p.R88W 0.30 deleterious(0) possibly_damaging(0.745) TCGA-BR-8487-01 19 44224117 44224117 C - IRGC 3'UTR 0.24 TCGA-BR-8487-01 19 4446124 4446124 C T UBXN6 Nonsense_Mutation p.W374* 0.10 TCGA-BR-8487-01 19 44503252 44503252 G A ZNF155 3'Flank 0.25 TCGA-BR-8487-01 19 44515452 44515452 A G ZNF230 Missense_Mutation p.K421E 0.15 deleterious(0.02) benign(0.008) TCGA-BR-8487-01 19 44610440 44610440 G A ZNF224 Intron 0.43 TCGA-BR-8487-01 19 44636503 44636503 G T ZNF225 Missense_Mutation p.R579L 0.60 tolerated(0.19) benign(0.397) TCGA-BR-8487-01 19 44654608 44654608 A - ZNF234 Frame_Shift_Del p.K64Sfs*4 0.57 TCGA-BR-8487-01 19 44740078 44740078 A G ZNF227 Missense_Mutation p.K499E 0.25 deleterious(0.03) probably_damaging(0.96) TCGA-BR-8487-01 19 4475282 4475282 T A HDGFRP2 Missense_Mutation p.I28N 0.31 deleterious(0) possibly_damaging(0.506) TCGA-BR-8487-01 19 44791768 44791768 C T ZNF235 Missense_Mutation p.R607Q 0.27 tolerated(0.38) possibly_damaging(0.56) TCGA-BR-8487-01 19 44792901 44792901 C T ZNF235 Silent p.V229V 0.25 TCGA-BR-8487-01 19 44803829 44803829 C T ZNF235 Silent p.L24L 0.26 TCGA-BR-8487-01 19 44982338 44982338 T - ZNF180 Frame_Shift_Del p.D121Ifs*17 0.28 TCGA-BR-8487-01 19 45026685 45026685 A G CEACAM20 RNA 0.40 TCGA-BR-8487-01 19 4508874 4508874 C T PLIN4 Missense_Mutation p.R1189H 0.70 tolerated(0.06) possibly_damaging(0.746) TCGA-BR-8487-01 19 45281378 45281378 G A CBLC Missense_Mutation p.A64T 0.43 tolerated(0.53) benign(0.038) TCGA-BR-8487-01 19 45316592 45316592 A G BCAM Missense_Mutation p.E197G 0.61 tolerated(0.05) possibly_damaging(0.796) TCGA-BR-8487-01 19 45318008 45318008 C T BCAM Missense_Mutation p.R357C 0.31 tolerated(0.08) probably_damaging(0.912) TCGA-BR-8487-01 19 45593471 45593471 C A GEMIN7 Silent p.P33P 0.26 TCGA-BR-8487-01 19 45593631 45593631 C T GEMIN7 Missense_Mutation p.R87C 0.62 tolerated(0.12) possibly_damaging(0.521) TCGA-BR-8487-01 19 45667454 45667454 A T TRAPPC6A Missense_Mutation p.S122T 0.30 tolerated(0.2) benign(0.021) TCGA-BR-8487-01 19 45855886 45855886 C - ERCC2 Frame_Shift_Del p.D642Tfs*67 0.33 TCGA-BR-8487-01 19 45885943 45885943 A G PPP1R13L Missense_Mutation p.Y764H 0.23 deleterious(0.01) possibly_damaging(0.758) TCGA-BR-8487-01 19 45889310 45889310 C A PPP1R13L Missense_Mutation p.K648N 0.26 tolerated(0.09) possibly_damaging(0.461) TCGA-BR-8487-01 19 45899436 45899436 C - PPP1R13L Frame_Shift_Del p.G298Afs*77 0.45 TCGA-BR-8487-01 19 45899882 45899882 G A PPP1R13L Silent p.Y211Y 0.50 TCGA-BR-8487-01 19 46116926 46116926 A T EML2 Missense_Mutation p.I767N 0.10 deleterious(0) possibly_damaging(0.813) TCGA-BR-8487-01 19 46190938 46190938 A G SNRPD2 Missense_Mutation p.V77A 0.56 tolerated(0.09) benign(0.065) TCGA-BR-8487-01 19 46198751 46198751 C A QPCTL Silent p.P136P 0.06 TCGA-BR-8487-01 19 46215024 46215024 C T FBXO46 Missense_Mutation p.R577H 0.17 deleterious(0) probably_damaging(0.984) TCGA-BR-8487-01 19 46215953 46215953 G A FBXO46 Silent p.N267N 0.26 TCGA-BR-8487-01 19 46328490 46328490 G A SYMPK Missense_Mutation p.A810V 0.55 tolerated(0.31) benign(0.008) TCGA-BR-8487-01 19 46521596 46521596 G A CCDC61 Missense_Mutation p.R497H 0.71 deleterious(0) probably_damaging(0.923) TCGA-BR-8487-01 19 47224014 47224014 G T STRN4 Missense_Mutation p.L710M 0.42 deleterious(0) probably_damaging(0.998) TCGA-BR-8487-01 19 47844795 47844795 G A C5AR2 Missense_Mutation p.A247T 0.55 tolerated(0.47) benign(0.002) TCGA-BR-8487-01 19 47879807 47879807 C T DHX34 Silent p.D863D 0.47 TCGA-BR-8487-01 19 48967755 48967755 C T KCNJ14 Silent p.V344V 0.32 TCGA-BR-8487-01 19 49110328 49110328 C A SPACA4 Silent p.S31S 0.06 TCGA-BR-8487-01 19 49339655 49339655 G A HSD17B14 Missense_Mutation p.T5M 0.64 tolerated(0.11) benign(0.004) TCGA-BR-8487-01 19 49340528 49340528 C T PLEKHA4 3'UTR 0.25 TCGA-BR-8487-01 19 49400623 49400623 C T TULP2 Silent p.R21R 0.16 TCGA-BR-8487-01 19 49425747 49425747 T C NUCB1 3'UTR 0.28 TCGA-BR-8487-01 19 49464183 49464183 C T BAX Silent p.L162L 0.28 TCGA-BR-8487-01 19 49558136 49558136 C T CGB7 Missense_Mutation p.V49I 0.16 tolerated(0.43) benign(0.416) TCGA-BR-8487-01 19 49611078 49611083 GGGACC - SNRNP70 In_Frame_Del p.D236_R237del 0.27 TCGA-BR-8487-01 19 49619556 49619556 G A LIN7B Missense_Mutation p.A89T 0.17 deleterious(0.01) benign(0.356) TCGA-BR-8487-01 19 49636603 49636603 C T PPFIA3 Missense_Mutation p.A379V 0.37 deleterious(0) benign(0.221) TCGA-BR-8487-01 19 49646100 49646100 C T PPFIA3 Missense_Mutation p.R862W 0.28 deleterious(0) possibly_damaging(0.861) TCGA-BR-8487-01 19 49713993 49713993 C T TRPM4 Missense_Mutation p.R1119W 0.53 deleterious(0.01) probably_damaging(0.973) TCGA-BR-8487-01 19 49812999 49812999 C T SLC6A16 Missense_Mutation p.G262E 0.47 deleterious(0.03) probably_damaging(0.992) TCGA-BR-8487-01 19 50040398 50040398 G A RCN3 Missense_Mutation p.R185Q 0.08 deleterious(0) possibly_damaging(0.859) TCGA-BR-8487-01 19 50119005 50119005 C T PRR12 Missense_Mutation p.R1676C 0.25 unknown(0) TCGA-BR-8487-01 19 50143242 50143242 G A RRAS Silent p.G38G 0.24 TCGA-BR-8487-01 19 50158042 50158042 C - SCAF1 Frame_Shift_Del p.T1181Pfs*28 0.75 TCGA-BR-8487-01 19 50165361 50165361 G A IRF3 Missense_Mutation p.R276W 0.10 deleterious(0.03) probably_damaging(0.994) TCGA-BR-8487-01 19 50166694 50166694 G A IRF3 Silent p.R81R 0.57 TCGA-BR-8487-01 19 50314914 50314914 C T FUZ Missense_Mutation p.V121M 0.28 deleterious(0) benign(0.348) TCGA-BR-8487-01 19 50393711 50393711 G A IL4I1 Missense_Mutation p.A329V 0.19 tolerated(0.15) benign(0.045) TCGA-BR-8487-01 19 50393714 50393714 G A IL4I1 Missense_Mutation p.P328L 0.25 tolerated(0.29) benign(0.131) TCGA-BR-8487-01 19 50412080 50412080 T C NUP62 Missense_Mutation p.T329A 0.07 deleterious(0) probably_damaging(0.909) TCGA-BR-8487-01 19 50491600 50491600 G A VRK3 Intron 0.11 TCGA-BR-8487-01 19 50812298 50812298 C T MYH14 Missense_Mutation p.R1942W 0.63 deleterious(0) probably_damaging(0.99) TCGA-BR-8487-01 19 50905095 50905095 G A POLD1 Missense_Mutation p.R126H 0.23 deleterious(0.01) probably_damaging(0.983) TCGA-BR-8487-01 19 51021093 51021093 G A LRRC4B Missense_Mutation p.A626V 0.14 tolerated_low_confidence(0.1) possibly_damaging(0.652) TCGA-BR-8487-01 19 51200866 51200866 G A SHANK1 Silent p.Y639Y 0.16 TCGA-BR-8487-01 19 51220109 51220109 C - SHANK1 Frame_Shift_Del p.G23Afs*50 0.48 TCGA-BR-8487-01 19 51274805 51274805 C T GPR32 Silent p.Y316Y 0.20 TCGA-BR-8487-01 19 51452165 51452165 G A KLK5 Missense_Mutation p.A181V 0.16 tolerated(0.09) benign(0.175) TCGA-BR-8487-01 19 51535263 51535263 A T KLK12 Missense_Mutation p.L109H 0.49 deleterious(0) probably_damaging(0.986) TCGA-BR-8487-01 19 51633196 51633196 C - SIGLEC9 Intron 0.37 TCGA-BR-8487-01 19 51645702 51645702 T C SIGLEC7 Missense_Mutation p.Y26H 0.20 deleterious(0.02) possibly_damaging(0.797) TCGA-BR-8487-01 19 51671447 51671447 C - CTD-3187F8.14 Intron 0.32 TCGA-BR-8487-01 19 5215591 5215591 G A PTPRS Missense_Mutation p.P1371L 0.42 deleterious(0) benign(0.391) TCGA-BR-8487-01 19 5231469 5231469 C A PTPRS Missense_Mutation p.K669N 0.18 tolerated(0.19) possibly_damaging(0.872) TCGA-BR-8487-01 19 52394603 52394603 G A ZNF649 Silent p.Y262Y 0.27 TCGA-BR-8487-01 19 5244243 5244243 G - PTPRS Frame_Shift_Del p.S414Afs*30 0.31 TCGA-BR-8487-01 19 52447817 52447818 - G ZNF613 Frame_Shift_Ins p.E229Gfs*21 0.17 TCGA-BR-8487-01 19 52497291 52497291 A G ZNF615 Silent p.C357C 0.30 TCGA-BR-8487-01 19 52618535 52618535 T C ZNF616 Missense_Mutation p.T628A 0.45 deleterious(0.01) possibly_damaging(0.645) TCGA-BR-8487-01 19 52869661 52869661 T C ZNF610 Missense_Mutation p.Y344H 0.27 deleterious(0.02) probably_damaging(0.984) TCGA-BR-8487-01 19 52941841 52941841 T A ZNF534 Missense_Mutation p.H389Q 0.24 deleterious(0) unknown(0) TCGA-BR-8487-01 19 53014345 53014345 C T ZNF578 Silent p.G237G 0.56 TCGA-BR-8487-01 19 53209776 53209776 T C ZNF611 Missense_Mutation p.N178D 0.26 tolerated(0.09) benign(0.129) TCGA-BR-8487-01 19 53454819 53454819 A G ZNF816 Missense_Mutation p.M70T 0.12 tolerated(0.07) benign(0.041) TCGA-BR-8487-01 19 53652530 53652530 C T ZNF347 Missense_Mutation p.V36M 0.54 deleterious(0) probably_damaging(0.997) TCGA-BR-8487-01 19 53884769 53884769 G A ZNF525 Missense_Mutation p.A313T 0.25 tolerated(0.27) benign(0.05) TCGA-BR-8487-01 19 53958607 53958607 G A ZNF761 RNA 0.25 TCGA-BR-8487-01 19 54261544 54261544 C T MIR1283-2 RNA 0.56 TCGA-BR-8487-01 19 54301538 54301538 A G NLRP12 Silent p.A962A 0.48 TCGA-BR-8487-01 19 54466598 54466598 C T CACNG8 Missense_Mutation p.R68C 0.38 deleterious(0) possibly_damaging(0.827) TCGA-BR-8487-01 19 5455562 5455562 G A ZNRF4 Silent p.A20A 0.46 TCGA-BR-8487-01 19 5455855 5455855 C T ZNRF4 Missense_Mutation p.A118V 0.29 deleterious(0) probably_damaging(0.999) TCGA-BR-8487-01 19 54634837 54634837 G A PRPF31 Missense_Mutation p.E492K 0.29 tolerated_low_confidence(0.19) benign(0.002) TCGA-BR-8487-01 19 54758829 54758829 G T LILRB5 Missense_Mutation p.L342M 0.53 deleterious(0) probably_damaging(0.995) TCGA-BR-8487-01 19 55143558 55143558 G A LILRB1 Silent p.S177S 0.16 TCGA-BR-8487-01 19 55146567 55146567 C A LILRB1 Missense_Mutation p.A500D 0.25 deleterious(0.01) benign(0.019) TCGA-BR-8487-01 19 55333226 55333226 G T KIR3DL1 Nonsense_Mutation p.G288* 0.29 TCGA-BR-8487-01 19 55401040 55401040 G A FCAR Silent p.T225T 0.23 TCGA-BR-8487-01 19 55512269 55512269 C - NLRP2 3'UTR 0.30 TCGA-BR-8487-01 19 55607456 55607456 G - PPP1R12C Frame_Shift_Del p.I373Sfs*51 0.21 TCGA-BR-8487-01 19 55758268 55758268 G A PPP6R1 Silent p.S68S 0.55 TCGA-BR-8487-01 19 55994827 55994827 G A ZNF628 Missense_Mutation p.R756H 0.33 tolerated(0.39) unknown(0) TCGA-BR-8487-01 19 56160817 56160817 C T CCDC106 Silent p.S60S 0.50 TCGA-BR-8487-01 19 56185490 56185490 C - U2AF2 3'UTR 0.54 TCGA-BR-8487-01 19 56424302 56424302 G A NLRP13 Missense_Mutation p.A294V 0.20 tolerated(0.46) benign(0.031) TCGA-BR-8487-01 19 56600379 56600379 G A ZNF787 Silent p.A54A 0.26 TCGA-BR-8487-01 19 56952902 56952902 G A ZNF667 Nonsense_Mutation p.R488* 0.29 TCGA-BR-8487-01 19 57065374 57065374 T C ZFP28 Missense_Mutation p.V407A 0.17 tolerated(0.06) benign(0.01) TCGA-BR-8487-01 19 57327157 57327157 C A PEG3 Missense_Mutation p.G885C 0.09 deleterious(0.03) benign(0.046) TCGA-BR-8487-01 19 5783603 5783603 C T PRR22 Missense_Mutation p.G219S 0.32 tolerated(1) benign(0.008) TCGA-BR-8487-01 19 5785436 5785436 G A CTB-54O9.9 Missense_Mutation p.T35M 0.39 deleterious(0) probably_damaging(0.988) TCGA-BR-8487-01 19 5787151 5787151 C T DUS3L Missense_Mutation p.R437H 0.44 deleterious(0) probably_damaging(0.992) TCGA-BR-8487-01 19 57876433 57876433 G A TRAPPC2P1 Missense_Mutation p.A78T 0.11 deleterious(0.04) benign(0.005) TCGA-BR-8487-01 19 57956001 57956001 G T ZNF749 Missense_Mutation p.Q495H 0.19 tolerated(0.19) benign(0.216) TCGA-BR-8487-01 19 58005046 58005046 G T ZNF419 Missense_Mutation p.S375I 0.52 deleterious(0.05) probably_damaging(0.93) TCGA-BR-8487-01 19 58213466 58213466 T C ZNF154 Missense_Mutation p.Y284C 0.57 tolerated(0.12) probably_damaging(0.986) TCGA-BR-8487-01 19 58371388 58371388 T C ZNF587 Silent p.I536I 0.25 TCGA-BR-8487-01 19 58384582 58384583 - A ZNF814 Frame_Shift_Ins p.R726* 0.18 TCGA-BR-8487-01 19 58453484 58453484 C A ZNF256 Missense_Mutation p.G231V 0.08 tolerated(0.33) possibly_damaging(0.744) TCGA-BR-8487-01 19 58565357 58565357 T - ZSCAN1 Frame_Shift_Del p.F389Sfs*61 0.17 TCGA-BR-8487-01 19 58571350 58571350 G A ZNF135 Intron 0.09 TCGA-BR-8487-01 19 58571574 58571574 A G ZNF135 Intron 0.33 TCGA-BR-8487-01 19 5867333 5867333 G A FUT5 Missense_Mutation p.P135L 0.39 deleterious(0.01) probably_damaging(0.971) TCGA-BR-8487-01 19 58868129 58868129 C T ZNF497 Silent p.Q291Q 0.35 TCGA-BR-8487-01 19 5917974 5917974 T C RANBP3 Silent p.T497T 0.41 TCGA-BR-8487-01 19 610372 610372 C T HCN2 Silent p.S517S 0.45 TCGA-BR-8487-01 19 6216430 6216430 C T MLLT1 Silent p.P431P 0.36 TCGA-BR-8487-01 19 6222213 6222213 G A MLLT1 Silent p.A343A 0.29 TCGA-BR-8487-01 19 6270614 6270614 C T MLLT1 Missense_Mutation p.D57N 0.34 deleterious(0.04) benign(0.19) TCGA-BR-8487-01 19 6380696 6380696 G A GTF2F1 Missense_Mutation p.R413W 0.14 deleterious(0) possibly_damaging(0.787) TCGA-BR-8487-01 19 6468317 6468317 G A DENND1C Silent p.S573S 0.13 TCGA-BR-8487-01 19 648082 648082 G T RNF126 3'UTR 0.52 TCGA-BR-8487-01 19 6495185 6495185 T A TUBB4A Missense_Mutation p.E442V 0.42 deleterious_low_confidence(0) unknown(0) TCGA-BR-8487-01 19 6732167 6732167 C A GPR108 Splice_Site p.X376_splice 0.27 TCGA-BR-8487-01 19 8002975 8002975 T - TIMM44 Frame_Shift_Del p.K83Nfs*9 0.18 TCGA-BR-8487-01 19 8196625 8196625 C - FBN3 Frame_Shift_Del p.L602Wfs*3 0.32 TCGA-BR-8487-01 19 8661959 8661959 G A ADAMTS10 Nonsense_Mutation p.Q318* 0.36 TCGA-BR-8487-01 19 876999 876999 G A MED16 Missense_Mutation p.T512M 0.40 tolerated(0.31) benign(0.017) TCGA-BR-8487-01 19 8807775 8807775 C A ACTL9 3'UTR 0.10 TCGA-BR-8487-01 19 8999048 8999048 C T MUC16 Missense_Mutation p.R13599Q 0.44 benign(0.323) TCGA-BR-8487-01 19 9049229 9049229 G A MUC16 Missense_Mutation p.A10801V 0.36 benign(0.021) TCGA-BR-8487-01 19 9075091 9075091 T A MUC16 Missense_Mutation p.T4119S 0.08 unknown(0) TCGA-BR-8487-01 19 9272105 9272105 A G ZNF317 Missense_Mutation p.Q595R 0.09 tolerated_low_confidence(0.14) benign(0.01) TCGA-BR-8487-01 19 9678785 9678785 T C ZNF121 5'UTR 0.46 TCGA-BR-8487-01 19 9958805 9958805 C T PIN1 Missense_Mutation p.A124V 0.32 tolerated(0.22) benign(0.002) TCGA-BR-8487-01 1 100588802 100588802 A - SASS6 Frame_Shift_Del p.L57Yfs*14 0.58 TCGA-BR-8487-01 1 100614640 100614640 G A LRRC39 3'UTR 0.37 TCGA-BR-8487-01 1 100889837 100889837 C - CDC14A Frame_Shift_Del p.Y126Ifs*64 0.29 TCGA-BR-8487-01 1 10238793 10238793 T G UBE4B Missense_Mutation p.L1206R 0.11 tolerated(0.51) benign(0.115) TCGA-BR-8487-01 1 10240024 10240024 C T UBE4B 3'UTR 0.44 TCGA-BR-8487-01 1 103385868 103385868 T - COL11A1 Frame_Shift_Del p.K1254Rfs*18 0.22 TCGA-BR-8487-01 1 103387077 103387077 A C COL11A1 Silent p.A1235A 0.12 TCGA-BR-8487-01 1 10460577 10460577 T A PGD Missense_Mutation p.I71N 0.38 deleterious(0) possibly_damaging(0.89) TCGA-BR-8487-01 1 107599615 107599615 C T PRMT6 Missense_Mutation p.T93I 0.34 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 1 107867286 107867286 A G NTNG1 Missense_Mutation p.Y210C 0.24 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 1 109793004 109793004 T C CELSR2 Silent p.I101I 0.45 TCGA-BR-8487-01 1 109816666 109816666 C T CELSR2 Missense_Mutation p.H2923Y 0.16 deleterious_low_confidence(0) benign(0) TCGA-BR-8487-01 1 109859557 109859557 T C SORT1 Missense_Mutation p.K722R 0.26 tolerated(0.4) benign(0.005) TCGA-BR-8487-01 1 110168804 110168804 C T AMPD2 Missense_Mutation p.R180W 0.29 deleterious(0.02) benign(0.023) TCGA-BR-8487-01 1 110169810 110169810 C - AMPD2 Frame_Shift_Del p.P300Lfs*63 0.29 TCGA-BR-8487-01 1 110171361 110171361 C T AMPD2 Missense_Mutation p.R556C 0.22 tolerated(0.12) benign(0.007) TCGA-BR-8487-01 1 110255560 110255560 C T GSTM5 Intron 0.50 TCGA-BR-8487-01 1 110300580 110300580 T - EPS8L3 Frame_Shift_Del p.N274Tfs*33 0.29 TCGA-BR-8487-01 1 1104438 1104438 T C TTLL10 5'Flank 0.11 TCGA-BR-8487-01 1 110754584 110754584 G A KCNC4 Missense_Mutation p.E155K 0.48 tolerated(0.06) benign(0.004) TCGA-BR-8487-01 1 111146992 111146992 C T KCNA2 Missense_Mutation p.R138H 0.52 deleterious(0.04) benign(0.139) TCGA-BR-8487-01 1 111216110 111216110 G C KCNA3 Missense_Mutation p.T441S 0.34 tolerated(0.16) benign(0.231) TCGA-BR-8487-01 1 111437656 111437656 G A CD53 Silent p.A134A 0.36 TCGA-BR-8487-01 1 111490657 111490658 - T LRIF1 Frame_Shift_Ins p.I745Nfs*5 0.12 TCGA-BR-8487-01 1 111690562 111690562 G A CEPT1 Missense_Mutation p.V76I 0.47 tolerated(0.09) probably_damaging(0.972) TCGA-BR-8487-01 1 112045810 112045811 - T ADORA3 Frame_Shift_Ins p.L56Hfs*3 0.26 TCGA-BR-8487-01 1 112525093 112525093 G A KCND3 Missense_Mutation p.R86W 0.32 deleterious(0) probably_damaging(0.978) TCGA-BR-8487-01 1 11291365 11291365 G A MTOR Missense_Mutation p.R881C 0.33 deleterious(0) probably_damaging(0.98) TCGA-BR-8487-01 1 11297944 11297944 T C MTOR Missense_Mutation p.N722D 0.40 deleterious(0.02) probably_damaging(0.98) TCGA-BR-8487-01 1 113051996 113051996 C T WNT2B Missense_Mutation p.R38C 0.10 deleterious(0.01) possibly_damaging(0.689) TCGA-BR-8487-01 1 113059031 113059031 G T WNT2B Missense_Mutation p.G225C 0.39 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 1 113243060 113243060 C - MOV10 Frame_Shift_Del p.Q983Rfs*35 0.31 TCGA-BR-8487-01 1 113252667 113252667 G A PPM1J 3'UTR 0.48 TCGA-BR-8487-01 1 114216007 114216007 G - MAGI3 Frame_Shift_Del p.K1039Rfs*61 0.26 TCGA-BR-8487-01 1 115829340 115829340 A G NGF Missense_Mutation p.V26A 0.45 tolerated(0.81) benign(0.002) TCGA-BR-8487-01 1 116380755 116380755 G A NHLH2 Missense_Mutation p.S80L 0.29 tolerated(0.05) possibly_damaging(0.488) TCGA-BR-8487-01 1 116519230 116519230 T C SLC22A15 5'UTR 0.44 TCGA-BR-8487-01 1 118481113 118481113 A G WDR3 Missense_Mutation p.T171A 0.23 deleterious(0.01) benign(0.014) TCGA-BR-8487-01 1 11860308 11860308 G A MTHFR Nonsense_Mutation p.R183* 0.37 TCGA-BR-8487-01 1 11861228 11861228 C T MTHFR Silent p.A155A 0.45 TCGA-BR-8487-01 1 118693898 118693898 T C SPAG17 Missense_Mutation p.Q61R 0.39 deleterious(0.03) probably_damaging(0.993) TCGA-BR-8487-01 1 119575743 119575743 G A WARS2 Missense_Mutation p.R292C 0.36 tolerated(0.08) benign(0.007) TCGA-BR-8487-01 1 120057096 120057096 G A HSD3B1 Missense_Mutation p.R317H 0.40 deleterious(0.04) benign(0.236) TCGA-BR-8487-01 1 1222558 1222558 T C SCNN1D Missense_Mutation p.Y397H 0.20 deleterious(0.01) probably_damaging(0.996) TCGA-BR-8487-01 1 12322018 12322018 G A VPS13D Missense_Mutation p.R492Q 0.33 possibly_damaging(0.894) TCGA-BR-8487-01 1 1266835 1266836 - G TAS1R3 Frame_Shift_Ins p.L40Afs*62 0.30 TCGA-BR-8487-01 1 1273478 1273478 G - DVL1 Frame_Shift_Del p.W507Gfs*142 0.30 TCGA-BR-8487-01 1 1374664 1374664 T C VWA1 Missense_Mutation p.Y279H 0.55 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 1 14105804 14105804 T C PRDM2 Missense_Mutation p.V505A 0.37 probably_damaging(0.994) TCGA-BR-8487-01 1 14105890 14105890 A G PRDM2 Missense_Mutation p.T534A 0.43 benign(0.014) TCGA-BR-8487-01 1 14108082 14108082 T C PRDM2 Silent p.D1264D 0.18 TCGA-BR-8487-01 1 144857026 144857026 A G PDE4DIP Silent p.T2153T 0.09 TCGA-BR-8487-01 1 145075880 145075880 C T PDE4DIP 5'UTR 0.14 TCGA-BR-8487-01 1 145415499 145415499 G A HFE2 Silent p.A106A 0.11 TCGA-BR-8487-01 1 1454318 1454318 G A ATAD3A Silent p.E202E 0.26 TCGA-BR-8487-01 1 145473439 145473439 G - ANKRD34A Frame_Shift_Del p.E39Rfs*4 0.28 TCGA-BR-8487-01 1 145537735 145537736 AG - ITGA10 Splice_Site p.X861_splice 0.20 TCGA-BR-8487-01 1 146638125 146638125 C T PRKAB2 Missense_Mutation p.D164N 0.58 deleterious(0.04) possibly_damaging(0.598) TCGA-BR-8487-01 1 148346769 148346769 G A NBPF20 5'UTR 0.14 TCGA-BR-8487-01 1 149783533 149783533 T C HIST2H2BF Missense_Mutation p.T116A 0.46 deleterious_low_confidence(0.01) possibly_damaging(0.565) TCGA-BR-8487-01 1 149857996 149857996 G T HIST2H2BE Silent p.S65S 0.49 TCGA-BR-8487-01 1 149905314 149905314 C T MTMR11 Missense_Mutation p.A324T 0.30 tolerated(0.48) benign(0.006) TCGA-BR-8487-01 1 150252086 150252086 G A C1orf54 Silent p.L111L 0.57 TCGA-BR-8487-01 1 150444477 150444477 G A RPRD2 Missense_Mutation p.R1018H 0.05 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BR-8487-01 1 150599823 150599823 G A ENSA Intron 0.26 TCGA-BR-8487-01 1 150973067 150973067 G A FAM63A Silent p.L249L 0.55 TCGA-BR-8487-01 1 151020505 151020505 G T C1orf56 Missense_Mutation p.R61M 0.19 deleterious_low_confidence(0) probably_damaging(0.919) TCGA-BR-8487-01 1 151259458 151259458 C - ZNF687 Frame_Shift_Del p.Q232Rfs*3 0.13 TCGA-BR-8487-01 1 151518350 151518351 - TC TUFT1 Intron 0.48 TCGA-BR-8487-01 1 151779906 151779906 G A RORC 3'UTR 0.40 TCGA-BR-8487-01 1 151798491 151798491 G A RORC Intron 0.12 TCGA-BR-8487-01 1 152127424 152127424 G A RPTN Silent p.H717H 0.13 TCGA-BR-8487-01 1 152187054 152187054 A T HRNR Missense_Mutation p.S2351T 0.04 unknown(0) TCGA-BR-8487-01 1 152276823 152276823 C T FLG Silent p.A3513A 0.29 TCGA-BR-8487-01 1 152278662 152278662 A G FLG Silent p.H2900H 0.07 TCGA-BR-8487-01 1 152278749 152278749 T C FLG Silent p.S2871S 0.10 TCGA-BR-8487-01 1 152278757 152278757 T C FLG Missense_Mutation p.R2869G 0.10 benign(0.099) TCGA-BR-8487-01 1 152278762 152278762 A C FLG Missense_Mutation p.I2867S 0.11 benign(0) TCGA-BR-8487-01 1 152279050 152279050 T C FLG Missense_Mutation p.Q2771R 0.13 benign(0.009) TCGA-BR-8487-01 1 152280492 152280492 G A FLG Silent p.A2290A 0.16 TCGA-BR-8487-01 1 152280504 152280504 G T FLG Missense_Mutation p.H2286Q 0.14 benign(0.353) TCGA-BR-8487-01 1 152280635 152280635 C A FLG Missense_Mutation p.V2243F 0.19 possibly_damaging(0.727) TCGA-BR-8487-01 1 152285753 152285753 T G FLG Missense_Mutation p.N537H 0.60 benign(0.076) TCGA-BR-8487-01 1 152286029 152286029 G C FLG Missense_Mutation p.L445V 0.31 possibly_damaging(0.451) TCGA-BR-8487-01 1 152286885 152286885 T - FLG Frame_Shift_Del p.E160Kfs*34 0.42 TCGA-BR-8487-01 1 152382676 152382676 G A CRNN Silent p.H294H 0.15 TCGA-BR-8487-01 1 153520060 153520060 G T S100A3 3'UTR 0.48 TCGA-BR-8487-01 1 153723713 153723713 C T INTS3 Missense_Mutation p.R243W 0.29 deleterious(0) possibly_damaging(0.859) TCGA-BR-8487-01 1 153745039 153745039 A G INTS3 Intron 0.33 TCGA-BR-8487-01 1 153911461 153911462 TG - DENND4B Frame_Shift_Del p.Q627Dfs*7 0.46 TCGA-BR-8487-01 1 153913024 153913024 G A DENND4B Missense_Mutation p.A462V 0.26 deleterious(0) probably_damaging(0.99) TCGA-BR-8487-01 1 154296793 154296793 C T AQP10 Missense_Mutation p.A248V 0.31 deleterious(0.03) possibly_damaging(0.633) TCGA-BR-8487-01 1 154938468 154938468 G - SHC1 Frame_Shift_Del p.N448Ifs*15 0.22 TCGA-BR-8487-01 1 154942648 154942648 C T SHC1 Missense_Mutation p.G119R 0.28 tolerated(0.09) benign(0.073) TCGA-BR-8487-01 1 154960618 154960618 G A FLAD1 Missense_Mutation p.R137Q 0.33 tolerated(0.22) benign(0.183) TCGA-BR-8487-01 1 155006032 155006032 C T DCST2 Missense_Mutation p.G49D 0.09 deleterious(0.03) possibly_damaging(0.489) TCGA-BR-8487-01 1 155150709 155150709 G A TRIM46 Missense_Mutation p.A381T 0.53 tolerated(0.91) probably_damaging(0.998) TCGA-BR-8487-01 1 155160852 155160852 A - MUC1 Frame_Shift_Del p.A226Pfs*98 0.25 TCGA-BR-8487-01 1 155209421 155209421 T C GBA Missense_Mutation p.Y147C 0.29 deleterious(0.02) probably_damaging(0.92) TCGA-BR-8487-01 1 155221590 155221590 G A FAM189B Missense_Mutation p.P243L 0.32 deleterious(0) probably_damaging(0.994) TCGA-BR-8487-01 1 155232988 155232988 G - CLK2 3'UTR 0.32 TCGA-BR-8487-01 1 155233764 155233764 G A CLK2 Missense_Mutation p.R431C 0.26 deleterious(0.02) benign(0.086) TCGA-BR-8487-01 1 155234456 155234456 C T CLK2 Missense_Mutation p.R347Q 0.07 deleterious(0) probably_damaging(0.999) TCGA-BR-8487-01 1 155294615 155294615 G A RUSC1 Intron 0.58 TCGA-BR-8487-01 1 155294946 155294946 G A RUSC1 Missense_Mutation p.A504T 0.26 tolerated(0.83) possibly_damaging(0.463) TCGA-BR-8487-01 1 155448745 155448745 G A ASH1L Nonsense_Mutation p.R1306* 0.55 TCGA-BR-8487-01 1 155491157 155491157 G A ASH1L Missense_Mutation p.R52W 0.06 tolerated_low_confidence(0.19) benign(0) TCGA-BR-8487-01 1 155719631 155719631 G T GON4L 3'UTR 0.17 TCGA-BR-8487-01 1 155911941 155911941 G A RXFP4 Silent p.A147A 0.59 TCGA-BR-8487-01 1 156018332 156018332 G A UBQLN4 Missense_Mutation p.T287M 0.55 deleterious(0.01) probably_damaging(0.972) TCGA-BR-8487-01 1 156035832 156035832 C T RAB25 Silent p.T58T 0.31 TCGA-BR-8487-01 1 156124510 156124510 T C SEMA4A Splice_Site p.X47_splice 0.50 TCGA-BR-8487-01 1 156130338 156130338 C T SEMA4A Missense_Mutation p.R225C 0.45 deleterious(0.05) benign(0.035) TCGA-BR-8487-01 1 156216522 156216522 T C PAQR6 5'UTR 0.16 TCGA-BR-8487-01 1 156438036 156438036 G - MEF2D Frame_Shift_Del p.H435Tfs*76 0.19 TCGA-BR-8487-01 1 156737935 156737935 T C PRCC Silent p.P124P 0.30 TCGA-BR-8487-01 1 156737938 156737938 A C PRCC Silent p.P125P 0.30 TCGA-BR-8487-01 1 156811288 156811288 G A INSRR Missense_Mutation p.T1187I 0.20 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 1 156883790 156883790 C - PEAR1 Frame_Shift_Del p.R956Gfs*30 0.21 TCGA-BR-8487-01 1 156926350 156926350 G - ARHGEF11 Frame_Shift_Del p.M512Wfs*9 0.34 TCGA-BR-8487-01 1 157068643 157068643 C A ETV3L Missense_Mutation p.R114M 0.28 deleterious(0) probably_damaging(0.998) TCGA-BR-8487-01 1 157738437 157738437 G A FCRL2 Missense_Mutation p.T217I 0.27 tolerated(1) benign(0.019) TCGA-BR-8487-01 1 158435493 158435493 A G OR10K1 Missense_Mutation p.T48A 0.23 tolerated(0.08) probably_damaging(0.997) TCGA-BR-8487-01 1 158576274 158576274 G T OR10Z1 Missense_Mutation p.G16C 0.28 deleterious(0) possibly_damaging(0.804) TCGA-BR-8487-01 1 15863138 15863138 C T DNAJC16 Missense_Mutation p.R135W 0.42 deleterious(0) possibly_damaging(0.901) TCGA-BR-8487-01 1 158724749 158724749 G A OR6K6 Silent p.A48A 0.25 TCGA-BR-8487-01 1 158813179 158813179 G A MNDA Missense_Mutation p.A126T 0.62 tolerated(0.17) benign(0.001) TCGA-BR-8487-01 1 15909692 15909692 G T AGMAT Silent p.T157T 0.33 TCGA-BR-8487-01 1 159683773 159683773 C T CRP Missense_Mutation p.A73T 0.15 tolerated(0.1) possibly_damaging(0.599) TCGA-BR-8487-01 1 160012018 160012018 G - KCNJ10 Frame_Shift_Del p.P102Rfs*96 0.23 TCGA-BR-8487-01 1 160057324 160057324 G - KCNJ9 Frame_Shift_Del p.G301Afs*8 0.35 TCGA-BR-8487-01 1 160134106 160134106 T - ATP1A4 Frame_Shift_Del p.F315Lfs*38 0.26 TCGA-BR-8487-01 1 160151795 160151795 C T ATP1A4 Silent p.D981D 0.27 TCGA-BR-8487-01 1 16054066 16054066 C T PLEKHM2 Missense_Mutation p.A500V 0.42 tolerated_low_confidence(0.1) possibly_damaging(0.821) TCGA-BR-8487-01 1 161011147 161011147 C T USF1 Missense_Mutation p.R176H 0.32 deleterious(0) possibly_damaging(0.512) TCGA-BR-8487-01 1 161017527 161017527 G T ARHGAP30 Missense_Mutation p.P1095H 0.23 tolerated_low_confidence(0.26) benign(0.007) TCGA-BR-8487-01 1 161043525 161043525 C T PVRL4 Silent p.T406T 0.22 TCGA-BR-8487-01 1 161335436 161335437 - G C1orf192 Frame_Shift_Ins p.A77Cfs*25 0.22 TCGA-BR-8487-01 1 161495465 161495465 G - HSPA6 Frame_Shift_Del p.G341Afs*21 0.34 TCGA-BR-8487-01 1 161722969 161722969 G A DUSP12 Missense_Mutation p.G260E 0.17 tolerated(0.11) benign(0.053) TCGA-BR-8487-01 1 16248846 16248846 T C SPEN Splice_Site p.X617_splice 0.45 TCGA-BR-8487-01 1 16259759 16259759 C T SPEN Nonsense_Mutation p.R2342* 0.19 TCGA-BR-8487-01 1 16262482 16262482 C T SPEN Silent p.P3249P 0.26 TCGA-BR-8487-01 1 16264140 16264140 G T SPEN Missense_Mutation p.K3503N 0.33 benign(0.078) TCGA-BR-8487-01 1 162782140 162782140 T C HSD17B7 Missense_Mutation p.L319P 0.68 deleterious(0) possibly_damaging(0.874) TCGA-BR-8487-01 1 16343700 16343700 G A HSPB7 Missense_Mutation p.R68C 0.41 deleterious(0.01) possibly_damaging(0.785) TCGA-BR-8487-01 1 16344393 16344393 G T HSPB7 Silent p.S22S 0.33 TCGA-BR-8487-01 1 16459687 16459687 C T EPHA2 Missense_Mutation p.V681I 0.43 deleterious(0) probably_damaging(0.966) TCGA-BR-8487-01 1 165513717 165513717 G A LRRC52 Missense_Mutation p.E62K 0.60 tolerated(0.24) benign(0.048) TCGA-BR-8487-01 1 16558726 16558726 C T RSG1 Silent p.E198E 0.41 TCGA-BR-8487-01 1 165621239 165621240 - T MGST3 Frame_Shift_Ins p.L75Sfs*39 0.16 TCGA-BR-8487-01 1 165638496 165638496 T C ALDH9A1 Intron 0.57 TCGA-BR-8487-01 1 166845410 166845410 C - TADA1 Frame_Shift_Del p.D21Tfs*3 0.14 TCGA-BR-8487-01 1 167024302 167024302 A G GPA33 Silent p.V246V 0.57 TCGA-BR-8487-01 1 16719757 16719757 G A SZRD1 Missense_Mutation p.V46M 0.08 deleterious(0.03) possibly_damaging(0.708) TCGA-BR-8487-01 1 167666580 167666580 G T RCSD1 Missense_Mutation p.R240M 0.13 deleterious(0) probably_damaging(0.989) TCGA-BR-8487-01 1 167666619 167666619 G T RCSD1 Missense_Mutation p.R253M 0.39 tolerated(0.07) possibly_damaging(0.747) TCGA-BR-8487-01 1 167971724 167971724 G A DCAF6 Missense_Mutation p.R303Q 0.55 deleterious(0.05) probably_damaging(0.964) TCGA-BR-8487-01 1 16809859 16809859 G A CROCCP3 RNA 0.40 TCGA-BR-8487-01 1 169391108 169391108 T C CCDC181 Silent p.S187S 0.30 TCGA-BR-8487-01 1 169499051 169499051 T - F5 Frame_Shift_Del p.D1739Ifs*6 0.19 TCGA-BR-8487-01 1 169510286 169510286 G T F5 Missense_Mutation p.L1348I 0.18 tolerated_low_confidence(0.12) possibly_damaging(0.475) TCGA-BR-8487-01 1 169790873 169790873 T G C1orf112 Missense_Mutation p.F252L 0.16 deleterious(0.02) benign(0.113) TCGA-BR-8487-01 1 170508692 170508692 A G GORAB Missense_Mutation p.K160E 0.61 tolerated(0.06) possibly_damaging(0.716) TCGA-BR-8487-01 1 170705416 170705416 A G PRRX1 3'UTR 0.19 TCGA-BR-8487-01 1 171514739 171514739 A - PRRC2C Frame_Shift_Del p.R1629Efs*31 0.12 TCGA-BR-8487-01 1 171560900 171560900 C - PRRC2C Frame_Shift_Del p.P2791Lfs*5 0.21 TCGA-BR-8487-01 1 171752950 171752950 T C METTL13 Missense_Mutation p.V75A 0.26 tolerated(0.08) benign(0.217) TCGA-BR-8487-01 1 1721996 1721996 C T GNB1 Silent p.T179T 0.36 TCGA-BR-8487-01 1 17250898 17250898 G A CROCC Missense_Mutation p.R92H 0.31 probably_damaging(0.997) TCGA-BR-8487-01 1 173754419 173754419 G C KLHL20 3'UTR 0.29 TCGA-BR-8487-01 1 175046823 175046823 T A TNN Missense_Mutation p.I90N 0.24 deleterious(0) probably_damaging(0.999) TCGA-BR-8487-01 1 175048797 175048797 C T TNN Silent p.G246G 0.49 TCGA-BR-8487-01 1 175116131 175116131 G A TNN Missense_Mutation p.R1275H 0.27 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 1 175334184 175334184 G A TNR Missense_Mutation p.T850I 0.27 tolerated(0.23) benign(0.142) TCGA-BR-8487-01 1 175360460 175360460 C T TNR Missense_Mutation p.A491T 0.59 tolerated(0.88) possibly_damaging(0.582) TCGA-BR-8487-01 1 176738824 176738824 C T PAPPA2 Missense_Mutation p.P1469S 0.11 tolerated(0.14) benign(0.007) TCGA-BR-8487-01 1 178412033 178412033 A - RASAL2 Frame_Shift_Del p.K386Rfs*10 0.24 TCGA-BR-8487-01 1 178425926 178425926 C T RASAL2 Missense_Mutation p.T761M 0.21 tolerated(0.15) probably_damaging(0.926) TCGA-BR-8487-01 1 179077212 179077212 C A ABL2 Missense_Mutation p.G1064C 0.23 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-BR-8487-01 1 179089336 179089336 A G ABL2 Missense_Mutation p.V345A 0.66 deleterious(0) possibly_damaging(0.791) TCGA-BR-8487-01 1 17949635 17949635 T C ARHGEF10L Missense_Mutation p.S389P 0.28 deleterious(0.01) benign(0.027) TCGA-BR-8487-01 1 18014129 18014129 G C ARHGEF10L Missense_Mutation p.S1024T 0.49 tolerated(0.38) benign(0.013) TCGA-BR-8487-01 1 181702772 181702772 G A CACNA1E Missense_Mutation p.E1050K 0.26 tolerated(0.4) benign(0.305) TCGA-BR-8487-01 1 181754546 181754546 G T CACNA1E Nonsense_Mutation p.E1891* 0.44 TCGA-BR-8487-01 1 182993180 182993180 A G LAMC1 Missense_Mutation p.N110S 0.18 deleterious(0.02) possibly_damaging(0.813) TCGA-BR-8487-01 1 183510196 183510196 G A SMG7 Missense_Mutation p.R458H 0.32 deleterious(0) probably_damaging(0.998) TCGA-BR-8487-01 1 183895550 183895550 T C RGL1 3'UTR 0.31 TCGA-BR-8487-01 1 186056769 186056769 A G HMCN1 Missense_Mutation p.K3119E 0.08 possibly_damaging(0.717) TCGA-BR-8487-01 1 186060030 186060030 G T HMCN1 Missense_Mutation p.G3290C 0.20 possibly_damaging(0.705) TCGA-BR-8487-01 1 186276815 186276815 A G PRG4 Missense_Mutation p.E655G 0.64 unknown(0) TCGA-BR-8487-01 1 186368168 186368168 A - C1orf27 Frame_Shift_Del p.D334Ifs*22 0.64 TCGA-BR-8487-01 1 190129864 190129864 A T BRINP3 Missense_Mutation p.V373E 0.61 deleterious(0.01) possibly_damaging(0.832) TCGA-BR-8487-01 1 190129921 190129921 C T BRINP3 Missense_Mutation p.R354H 0.26 deleterious(0) probably_damaging(0.996) TCGA-BR-8487-01 1 19027170 19027170 C T PAX7 Silent p.A270A 0.49 TCGA-BR-8487-01 1 19444466 19444466 A - UBR4 Intron 0.34 TCGA-BR-8487-01 1 19611268 19611268 T C AKR7A3 Missense_Mutation p.T206A 0.34 deleterious(0.01) benign(0.237) TCGA-BR-8487-01 1 1961127 1961127 G A GABRD Missense_Mutation p.A329T 0.15 deleterious(0) probably_damaging(0.999) TCGA-BR-8487-01 1 19652784 19652784 C T PQLC2 Missense_Mutation p.A143V 0.30 tolerated(1) benign(0) TCGA-BR-8487-01 1 196799650 196799650 C - CFHR1 Frame_Shift_Del p.P211Lfs*39 0.30 TCGA-BR-8487-01 1 197030158 197030158 G - F13B Frame_Shift_Del p.Q167Rfs*6 0.18 TCGA-BR-8487-01 1 197069676 197069676 T C ASPM Missense_Mutation p.Q2902R 0.66 deleterious(0.03) possibly_damaging(0.533) TCGA-BR-8487-01 1 197611862 197611862 A G DENND1B Silent p.I217I 0.68 TCGA-BR-8487-01 1 19992124 19992125 - G HTR6 5'UTR 0.32 TCGA-BR-8487-01 1 20005157 20005157 G A HTR6 Missense_Mutation p.G271D 0.42 deleterious(0) probably_damaging(0.956) TCGA-BR-8487-01 1 20005700 20005700 G A HTR6 Missense_Mutation p.G388S 0.31 tolerated(0.75) benign(0.005) TCGA-BR-8487-01 1 200572373 200572373 G A KIF14 Missense_Mutation p.R654C 0.18 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 1 200776602 200776602 T - CAMSAP2 Frame_Shift_Del p.Q169Kfs*17 0.20 TCGA-BR-8487-01 1 200818775 200818775 C T CAMSAP2 Missense_Mutation p.P960S 0.23 deleterious(0.02) probably_damaging(0.943) TCGA-BR-8487-01 1 201190657 201190657 G T IGFN1 Missense_Mutation p.Q3328H 0.26 probably_damaging(0.964) TCGA-BR-8487-01 1 201282596 201282596 G A PKP1 Silent p.P203P 0.50 TCGA-BR-8487-01 1 201618347 201618347 C T NAV1 Missense_Mutation p.P184L 0.16 deleterious(0) probably_damaging(0.999) TCGA-BR-8487-01 1 201970518 201970518 G A RNPEP Missense_Mutation p.D407N 0.20 tolerated(0.1) probably_damaging(0.999) TCGA-BR-8487-01 1 202128443 202128443 T - PTPN7 Frame_Shift_Del p.T135Rfs*19 0.17 TCGA-BR-8487-01 1 202569569 202569569 G A SYT2 Missense_Mutation p.R279C 0.56 deleterious(0.02) possibly_damaging(0.761) TCGA-BR-8487-01 1 202572238 202572238 G A SYT2 Silent p.D118D 0.21 TCGA-BR-8487-01 1 202698019 202698019 G A KDM5B 3'UTR 0.58 TCGA-BR-8487-01 1 203055031 203055031 T C MYOG Missense_Mutation p.E20G 0.09 tolerated(0.09) probably_damaging(0.982) TCGA-BR-8487-01 1 203143632 203143632 A G MYBPH Missense_Mutation p.V145A 0.34 deleterious(0) probably_damaging(0.994) TCGA-BR-8487-01 1 203192702 203192702 C T CHIT1 Missense_Mutation p.G134D 0.59 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 1 204416659 204416660 - G PIK3C2B Frame_Shift_Ins p.G799Wfs*9 0.38 TCGA-BR-8487-01 1 204588366 204588366 A G LRRN2 Missense_Mutation p.V252A 0.29 deleterious(0) probably_damaging(0.999) TCGA-BR-8487-01 1 204589060 204589060 G A LRRN2 Missense_Mutation p.P21S 0.33 tolerated(0.38) unknown(0) TCGA-BR-8487-01 1 204924033 204924033 C - NFASC Frame_Shift_Del p.P165Rfs*12 0.26 TCGA-BR-8487-01 1 204945965 204945965 C T NFASC Intron 0.17 TCGA-BR-8487-01 1 204985509 204985509 G A NFASC Missense_Mutation p.D1189N 0.55 deleterious(0) unknown(0) TCGA-BR-8487-01 1 20517261 20517261 C A UBXN10 Silent p.A69A 0.07 TCGA-BR-8487-01 1 20517393 20517393 G C UBXN10 Missense_Mutation p.K113N 0.14 deleterious(0) possibly_damaging(0.845) TCGA-BR-8487-01 1 205496979 205496979 C T CDK18 Missense_Mutation p.H293Y 0.18 deleterious(0) probably_damaging(0.991) TCGA-BR-8487-01 1 206241649 206241649 G A C1orf186 Missense_Mutation p.A47V 0.22 tolerated(0.28) benign(0.088) TCGA-BR-8487-01 1 206784635 206784635 A G EIF2D Missense_Mutation p.I50T 0.23 tolerated(0.15) benign(0.002) TCGA-BR-8487-01 1 206821130 206821130 C T DYRK3 Missense_Mutation p.A196V 0.28 deleterious(0) benign(0.033) TCGA-BR-8487-01 1 207087395 207087395 C - FAIM3 Frame_Shift_Del p.E28Sfs*17 0.22 TCGA-BR-8487-01 1 207739262 207739262 T C CR1 Missense_Mutation p.C1316R 0.29 deleterious(0) possibly_damaging(0.61) TCGA-BR-8487-01 1 208202363 208202363 G A PLXNA2 Silent p.N1750N 0.07 TCGA-BR-8487-01 1 20879828 20879828 T C FAM43B Missense_Mutation p.M121T 0.33 deleterious(0.03) benign(0.399) TCGA-BR-8487-01 1 20976990 20976990 G A PINK1 Missense_Mutation p.A518T 0.49 tolerated(0.14) benign(0.153) TCGA-BR-8487-01 1 209965706 209965706 C T IRF6 Nonsense_Mutation p.W192* 0.56 TCGA-BR-8487-01 1 21133762 21133762 A - EIF4G3 3'UTR 0.26 TCGA-BR-8487-01 1 212274197 212274197 C T DTL Missense_Mutation p.P622L 0.36 tolerated(0.7) possibly_damaging(0.449) TCGA-BR-8487-01 1 215847625 215847625 C A USH2A Missense_Mutation p.R4543M 0.55 benign(0.436) TCGA-BR-8487-01 1 2161173 2161173 G A SKI Missense_Mutation p.R323Q 0.44 tolerated(0.19) benign(0.155) TCGA-BR-8487-01 1 218036193 218036193 A G SPATA17 Silent p.V361V 0.51 TCGA-BR-8487-01 1 21887702 21887702 C T ALPL Silent p.S98S 0.50 TCGA-BR-8487-01 1 220091799 220091799 G A SLC30A10 Silent p.S252S 0.26 TCGA-BR-8487-01 1 220233097 220233097 C T BPNT1 Missense_Mutation p.V237I 0.56 tolerated(0.1) benign(0.029) TCGA-BR-8487-01 1 220369664 220369665 - T RAB3GAP2 Frame_Shift_Ins p.N296Kfs*2 0.21 TCGA-BR-8487-01 1 220825486 220825486 G A MARK1 Missense_Mutation p.R577Q 0.25 tolerated(0.14) benign(0.001) TCGA-BR-8487-01 1 221057925 221057925 C T HLX Missense_Mutation p.A449V 0.43 tolerated_low_confidence(0.47) benign(0.008) TCGA-BR-8487-01 1 222713509 222713509 G - HHIPL2 Frame_Shift_Del p.I432Sfs*26 0.24 TCGA-BR-8487-01 1 222732052 222732052 G A TAF1A Missense_Mutation p.R435W 0.49 tolerated(0.07) possibly_damaging(0.891) TCGA-BR-8487-01 1 224302029 224302029 G A FBXO28 Silent p.A66A 0.32 TCGA-BR-8487-01 1 22447841 22447841 G A WNT4 Nonsense_Mutation p.Q151* 0.31 TCGA-BR-8487-01 1 224488309 224488309 G A NVL Silent p.S339S 0.50 TCGA-BR-8487-01 1 226108959 226108959 C - RP4-559A3.7 Frame_Shift_Del p.G175Afs*301 0.19 TCGA-BR-8487-01 1 226125120 226125120 C A LEFTY2 3'UTR 0.08 TCGA-BR-8487-01 1 227076545 227076545 C A PSEN2 Silent p.T194T 0.26 TCGA-BR-8487-01 1 228248146 228248146 C A WNT3A 3'UTR 0.26 TCGA-BR-8487-01 1 228336464 228336464 C A GUK1 Missense_Mutation p.P213T 0.20 tolerated_low_confidence(0.21) benign(0.011) TCGA-BR-8487-01 1 228362618 228362618 G A IBA57 Silent p.P189P 0.35 TCGA-BR-8487-01 1 228430986 228430986 C T OBSCN Missense_Mutation p.T1103M 0.25 benign(0.085) TCGA-BR-8487-01 1 228468439 228468439 C T OBSCN Silent p.A3142A 0.61 TCGA-BR-8487-01 1 228469719 228469719 C T OBSCN Silent p.H3190H 0.22 TCGA-BR-8487-01 1 228475464 228475464 G A OBSCN Missense_Mutation p.R3634H 0.61 benign(0.356) TCGA-BR-8487-01 1 228491533 228491533 C T OBSCN Silent p.D4632D 0.20 TCGA-BR-8487-01 1 228582509 228582509 G A TRIM11 Missense_Mutation p.S435L 0.18 tolerated(0.06) possibly_damaging(0.493) TCGA-BR-8487-01 1 228596398 228596398 C T TRIM17 Missense_Mutation p.S313N 0.59 tolerated(0.07) benign(0.101) TCGA-BR-8487-01 1 22915939 22915939 C T EPHA8 Intron 0.32 TCGA-BR-8487-01 1 22964106 22964106 C T C1QA 5'UTR 0.29 TCGA-BR-8487-01 1 22965826 22965826 A - C1QA Frame_Shift_Del p.K223Rfs*59 0.28 TCGA-BR-8487-01 1 229738579 229738579 G A TAF5L Missense_Mutation p.P112L 0.29 tolerated(0.71) benign(0.001) TCGA-BR-8487-01 1 230492809 230492809 C T PGBD5 Missense_Mutation p.R128H 0.25 tolerated(0.06) benign(0.107) TCGA-BR-8487-01 1 230827229 230827229 C T COG2 Silent p.P678P 0.15 TCGA-BR-8487-01 1 231362513 231362513 T - C1orf131 Frame_Shift_Del p.K222Rfs*55 0.21 TCGA-BR-8487-01 1 231502214 231502214 T - EGLN1 Frame_Shift_Del p.G409Vfs*2 0.15 TCGA-BR-8487-01 1 23415322 23415323 - T LUZP1 3'UTR 0.16 TCGA-BR-8487-01 1 23415335 23415335 G A LUZP1 3'UTR 0.34 TCGA-BR-8487-01 1 23417973 23417973 G A LUZP1 Nonsense_Mutation p.R928* 0.35 TCGA-BR-8487-01 1 235971775 235971775 C T LYST Silent p.L781L 0.16 TCGA-BR-8487-01 1 236306321 236306321 C A GPR137B Missense_Mutation p.N133K 0.17 deleterious(0) possibly_damaging(0.831) TCGA-BR-8487-01 1 236987485 236987485 T C MTR Silent p.C277C 0.32 TCGA-BR-8487-01 1 237617790 237617790 C - RYR2 Frame_Shift_Del p.P466Qfs*5 0.32 TCGA-BR-8487-01 1 237837411 237837411 C A RYR2 Missense_Mutation p.P2869H 0.10 probably_damaging(0.998) TCGA-BR-8487-01 1 237969570 237969570 A G RYR2 Missense_Mutation p.H4762R 0.21 possibly_damaging(0.803) TCGA-BR-8487-01 1 23966274 23966274 G A MDS2 Missense_Mutation p.C84Y 0.56 tolerated_low_confidence(0.16) benign(0) TCGA-BR-8487-01 1 240255470 240255470 G A FMN2 Missense_Mutation p.G21S 0.31 unknown(0) TCGA-BR-8487-01 1 240257004 240257004 G A FMN2 Missense_Mutation p.G532D 0.24 unknown(0) TCGA-BR-8487-01 1 24078209 24078209 C A TCEB3 Missense_Mutation p.P398T 0.38 tolerated(0.1) benign(0.005) TCGA-BR-8487-01 1 241729893 241729893 G A KMO Missense_Mutation p.A264T 0.18 tolerated(0.11) benign(0.144) TCGA-BR-8487-01 1 2419116 2419116 C T PLCH2 Silent p.D371D 0.29 TCGA-BR-8487-01 1 244587345 244587345 T - ADSS Frame_Shift_Del p.K164Rfs*35 0.34 TCGA-BR-8487-01 1 245849096 245849096 C T KIF26B Silent p.D937D 0.30 TCGA-BR-8487-01 1 245849479 245849479 C - KIF26B Frame_Shift_Del p.R1067Gfs*65 0.23 TCGA-BR-8487-01 1 24668708 24668708 G A GRHL3 Missense_Mutation p.G384D 0.43 tolerated(0.84) possibly_damaging(0.835) TCGA-BR-8487-01 1 246927597 246927597 A G SCCPDH Missense_Mutation p.Q347R 0.53 tolerated(0.09) benign(0.005) TCGA-BR-8487-01 1 247081608 247081608 G A AHCTF1 Missense_Mutation p.A31V 0.22 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 1 247587978 247587978 C - NLRP3 Frame_Shift_Del p.L413Wfs*10 0.17 TCGA-BR-8487-01 1 247694926 247694926 C T OR2C3 Silent p.T296T 0.10 TCGA-BR-8487-01 1 247737543 247737543 T C GCSAML Silent p.Y89Y 0.13 TCGA-BR-8487-01 1 248202128 248202128 G A OR2L2 Missense_Mutation p.A187T 0.24 deleterious(0.01) possibly_damaging(0.654) TCGA-BR-8487-01 1 248616514 248616514 G A OR2T2 Missense_Mutation p.R139H 0.24 tolerated(0.95) benign(0.002) TCGA-BR-8487-01 1 248790058 248790058 A G OR2T11 Silent p.C124C 0.92 TCGA-BR-8487-01 1 248813816 248813816 C T OR2T27 Missense_Mutation p.V124I 0.18 deleterious(0.02) benign(0.013) TCGA-BR-8487-01 1 249106189 249106189 G A SH3BP5L Silent p.D364D 0.55 TCGA-BR-8487-01 1 249149644 249149645 TT - ZNF692 Frame_Shift_Del p.E331Afs*5 0.41 TCGA-BR-8487-01 1 24996800 24996800 G A SRRM1 Silent p.P798P 0.37 TCGA-BR-8487-01 1 25245750 25245750 G A RUNX3 Silent p.D189D 0.40 TCGA-BR-8487-01 1 26384893 26384893 G T TRIM63 Silent p.A273A 0.40 TCGA-BR-8487-01 1 26510765 26510765 C T CNKSR1 Silent p.S329S 0.22 TCGA-BR-8487-01 1 26527938 26527938 T C CATSPER4 Silent p.T431T 0.47 TCGA-BR-8487-01 1 27087914 27087914 A G ARID1A Missense_Mutation p.D734G 0.09 unknown(0) TCGA-BR-8487-01 1 27105931 27105931 G - ARID1A Frame_Shift_Del p.D1850Tfs*33 0.28 TCGA-BR-8487-01 1 27106804 27106804 C - ARID1A Frame_Shift_Del p.F2141Sfs*59 0.34 TCGA-BR-8487-01 1 27175193 27175193 C T ZDHHC18 Silent p.C197C 0.29 TCGA-BR-8487-01 1 27189799 27189799 G T SFN Missense_Mutation p.K32N 0.46 tolerated_low_confidence(0.5) benign(0.049) TCGA-BR-8487-01 1 27875216 27875216 G A AHDC1 Silent p.S1137S 0.41 TCGA-BR-8487-01 1 27875591 27875591 G A AHDC1 Silent p.P1012P 0.40 TCGA-BR-8487-01 1 27877978 27877978 C T AHDC1 Missense_Mutation p.G217R 0.47 tolerated_low_confidence(0.21) probably_damaging(0.98) TCGA-BR-8487-01 1 27943397 27943397 G A FGR Missense_Mutation p.S218L 0.13 deleterious(0) possibly_damaging(0.561) TCGA-BR-8487-01 1 28060599 28060599 C T FAM76A Missense_Mutation p.R121C 0.43 deleterious(0) probably_damaging(0.961) TCGA-BR-8487-01 1 28362100 28362100 C T EYA3 Missense_Mutation p.A106T 0.35 tolerated(1) benign(0.021) TCGA-BR-8487-01 1 28819566 28819566 G A PHACTR4 Missense_Mutation p.E696K 0.36 deleterious(0) probably_damaging(0.999) TCGA-BR-8487-01 1 29185674 29185674 C T OPRD1 Missense_Mutation p.R146C 0.47 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 1 29319963 29319963 T C EPB41 Missense_Mutation p.L197S 0.10 tolerated(0.83) benign(0.06) TCGA-BR-8487-01 1 29379717 29379717 A - EPB41 Frame_Shift_Del p.T582Qfs*11 0.28 TCGA-BR-8487-01 1 29630483 29630483 C T PTPRU Missense_Mutation p.R875C 0.12 deleterious(0) probably_damaging(0.92) TCGA-BR-8487-01 1 31189677 31189677 G A MATN1 Silent p.H250H 0.45 TCGA-BR-8487-01 1 31194331 31194331 C T MATN1 Missense_Mutation p.G121D 0.10 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 1 32086455 32086455 G A HCRTR1 Silent p.V130V 0.40 TCGA-BR-8487-01 1 32202210 32202210 G A BAI2 Missense_Mutation p.R1032C 0.32 deleterious(0.01) probably_damaging(1) TCGA-BR-8487-01 1 32221986 32221986 A G BAI2 Missense_Mutation p.L151P 0.27 deleterious(0) probably_damaging(0.982) TCGA-BR-8487-01 1 32628093 32628093 C T KPNA6 Silent p.S293S 0.44 TCGA-BR-8487-01 1 33241691 33241691 G A YARS Missense_Mutation p.A493V 0.35 tolerated_low_confidence(0.78) benign(0) TCGA-BR-8487-01 1 3328550 3328550 G A PRDM16 Missense_Mutation p.D597N 0.41 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 1 3328729 3328729 G A PRDM16 Silent p.P656P 0.41 TCGA-BR-8487-01 1 3328745 3328745 G A PRDM16 Missense_Mutation p.V662M 0.13 tolerated(0.09) benign(0.011) TCGA-BR-8487-01 1 33411153 33411153 G A RNF19B Missense_Mutation p.S409L 0.39 deleterious(0.01) benign(0.137) TCGA-BR-8487-01 1 33585810 33585810 C T ADC 3'UTR 0.13 TCGA-BR-8487-01 1 33799727 33799727 T G PHC2 Missense_Mutation p.E574D 0.09 deleterious(0) possibly_damaging(0.562) TCGA-BR-8487-01 1 3391302 3391302 G A ARHGEF16 Missense_Mutation p.E446K 0.45 tolerated(0.64) benign(0.013) TCGA-BR-8487-01 1 35580393 35580393 T C ZMYM1 Missense_Mutation p.Y988H 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8487-01 1 36217106 36217106 A G CLSPN Silent p.G591G 0.29 TCGA-BR-8487-01 1 36564489 36564489 C - COL8A2 Frame_Shift_Del p.E265Sfs*13 0.33 TCGA-BR-8487-01 1 38265771 38265771 C T MANEAL Missense_Mutation p.R424C 0.35 tolerated(0.17) benign(0.271) TCGA-BR-8487-01 1 40028016 40028016 G - PABPC4 Frame_Shift_Del p.Q581Rfs*33 0.35 TCGA-BR-8487-01 1 41007369 41007369 C T ZNF684 Silent p.H75H 0.19 TCGA-BR-8487-01 1 41285124 41285124 G A KCNQ4 Missense_Mutation p.D272N 0.08 deleterious(0) probably_damaging(0.993) TCGA-BR-8487-01 1 41978664 41978664 C A HIVEP3 Missense_Mutation p.Q2076H 0.26 possibly_damaging(0.549) TCGA-BR-8487-01 1 42046123 42046124 - T HIVEP3 Frame_Shift_Ins p.R1449Kfs*12 0.13 TCGA-BR-8487-01 1 43200818 43200819 AG - CLDN19 Intron 0.30 TCGA-BR-8487-01 1 43830302 43830302 C T ELOVL1 Missense_Mutation p.R131Q 0.41 deleterious(0) probably_damaging(0.999) TCGA-BR-8487-01 1 43903310 43903310 C T SZT2 Missense_Mutation p.A2055V 0.20 tolerated(0.26) benign(0.077) TCGA-BR-8487-01 1 43914072 43914072 G - SZT2 Frame_Shift_Del p.R3241Afs*11 0.40 TCGA-BR-8487-01 1 44447485 44447485 G A B4GALT2 Silent p.A175A 0.23 TCGA-BR-8487-01 1 44463145 44463145 T C SLC6A9 3'Flank 0.35 TCGA-BR-8487-01 1 44595272 44595272 G A KLF17 Missense_Mutation p.R110Q 0.39 tolerated(1) benign(0) TCGA-BR-8487-01 1 44878019 44878019 G A RNF220 Missense_Mutation p.A84T 0.42 tolerated_low_confidence(0.11) benign(0.039) TCGA-BR-8487-01 1 45250346 45250346 G A BEST4 Missense_Mutation p.A368V 0.14 tolerated(0.08) benign(0.027) TCGA-BR-8487-01 1 45553798 45553798 C T ZSWIM5 Missense_Mutation p.G236D 0.36 tolerated(0.08) unknown(0) TCGA-BR-8487-01 1 46726490 46726490 C T RAD54L Missense_Mutation p.T190M 0.50 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 1 46746099 46746099 C A LRRC41 Missense_Mutation p.Q630H 0.09 deleterious(0) benign(0.387) TCGA-BR-8487-01 1 46746884 46746884 C T LRRC41 Missense_Mutation p.V557I 0.43 tolerated(0.44) benign(0.198) TCGA-BR-8487-01 1 47717513 47717513 T C STIL Silent p.L1054L 0.40 TCGA-BR-8487-01 1 51755785 51755785 T C TTC39A Missense_Mutation p.E466G 0.18 deleterious(0.01) probably_damaging(0.925) TCGA-BR-8487-01 1 51934212 51934212 G A EPS15 Missense_Mutation p.A81V 0.40 deleterious(0) possibly_damaging(0.746) TCGA-BR-8487-01 1 51938529 51938529 A G EPS15 Splice_Site p.X55_splice 0.40 TCGA-BR-8487-01 1 52821855 52821855 T C CC2D1B Intron 0.37 TCGA-BR-8487-01 1 53972153 53972153 G A GLIS1 3'UTR 0.50 TCGA-BR-8487-01 1 55078225 55078225 G T FAM151A Missense_Mutation p.P245H 0.11 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 1 55518043 55518043 G A PCSK9 Missense_Mutation p.E206K 0.20 tolerated(0.06) benign(0.096) TCGA-BR-8487-01 1 57002717 57002717 A T PPAP2B Missense_Mutation p.N69K 0.44 tolerated(0.15) benign(0.06) TCGA-BR-8487-01 1 59125788 59125788 T C MYSM1 Missense_Mutation p.N790D 0.35 tolerated(0.39) benign(0.019) TCGA-BR-8487-01 1 60314140 60314140 A - HOOK1 Frame_Shift_Del p.A364Qfs*8 0.25 TCGA-BR-8487-01 1 60456257 60456257 C T C1orf87 3'UTR 0.32 TCGA-BR-8487-01 1 62365309 62365309 C A INADL Missense_Mutation p.H1062Q 0.43 deleterious(0) probably_damaging(0.975) TCGA-BR-8487-01 1 6257785 6257785 T - RPL22 Frame_Shift_Del p.K15Rfs*5 0.72 TCGA-BR-8487-01 1 62738950 62738950 A C KANK4 Missense_Mutation p.L609R 0.32 deleterious(0.02) possibly_damaging(0.902) TCGA-BR-8487-01 1 62740427 62740427 G - KANK4 Frame_Shift_Del p.Q117Rfs*9 0.25 TCGA-BR-8487-01 1 63902675 63902675 A G ALG6 Missense_Mutation p.Q503R 0.38 tolerated(0.21) benign(0.003) TCGA-BR-8487-01 1 64089030 64089030 A G PGM1 5'UTR 0.47 TCGA-BR-8487-01 1 65143987 65143987 G A CACHD1 Missense_Mutation p.A1029T 0.54 tolerated(0.38) benign(0.016) TCGA-BR-8487-01 1 6653683 6653683 C - KLHL21 Frame_Shift_Del p.K513Sfs*18 0.20 TCGA-BR-8487-01 1 6692469 6692469 G C THAP3 Missense_Mutation p.A118P 0.14 tolerated(0.37) benign(0.007) TCGA-BR-8487-01 1 67390426 67390426 T - WDR78 Frame_Shift_Del p.K30Rfs*28 0.22 TCGA-BR-8487-01 1 75097559 75097559 C T C1orf173 Missense_Mutation p.M219I 0.29 tolerated(0.3) benign(0.016) TCGA-BR-8487-01 1 78162997 78162997 A - USP33 3'UTR 0.28 TCGA-BR-8487-01 1 78177504 78177504 A G USP33 Silent p.I809I 0.30 TCGA-BR-8487-01 1 78326950 78326950 T - FAM73A Frame_Shift_Del p.L441* 0.27 TCGA-BR-8487-01 1 8415649 8415652 GTAG TA RERE Frame_Shift_Del p.Y1499Tfs*3 0.15 TCGA-BR-8487-01 1 84386822 84386822 G A TTLL7 Nonsense_Mutation p.R438* 0.22 TCGA-BR-8487-01 1 85121543 85121543 G A SSX2IP Missense_Mutation p.T454I 0.52 deleterious(0) probably_damaging(0.999) TCGA-BR-8487-01 1 86622215 86622215 A - COL24A1 5'UTR 0.62 TCGA-BR-8487-01 1 86826141 86826142 - T ODF2L Frame_Shift_Ins p.Q408Tfs*6 0.27 TCGA-BR-8487-01 1 879333 879333 G A SAMD11 Missense_Mutation p.V616M 0.49 tolerated(0.47) possibly_damaging(0.532) TCGA-BR-8487-01 1 89250378 89250378 C T PKN2 Missense_Mutation p.R348W 0.49 deleterious(0.03) probably_damaging(0.995) TCGA-BR-8487-01 1 89733145 89733145 T C GBP5 Missense_Mutation p.Y128C 0.22 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 1 92979126 92979126 A G EVI5 3'UTR 0.35 TCGA-BR-8487-01 1 9305037 9305037 G A H6PD Missense_Mutation p.G15D 0.35 tolerated(0.05) benign(0.13) TCGA-BR-8487-01 1 94335461 94335461 T - DNTTIP2 Frame_Shift_Del p.A740Qfs*65 0.35 TCGA-BR-8487-01 1 94650428 94650428 C A ARHGAP29 Missense_Mutation p.Q703H 0.41 deleterious(0) probably_damaging(0.993) TCGA-BR-8487-01 1 980571 980571 C - AGRN Frame_Shift_Del p.L764Yfs*99 0.34 TCGA-BR-8487-01 1 984699 984699 G A AGRN Missense_Mutation p.R1461Q 0.34 deleterious(0) probably_damaging(0.98) TCGA-BR-8487-01 20 10620392 10620392 C T JAG1 Silent p.K1137K 0.48 TCGA-BR-8487-01 20 1143792 1143792 G A PSMF1 Silent p.P190P 0.36 TCGA-BR-8487-01 20 13251371 13251371 G A ISM1 Missense_Mutation p.G120E 0.27 deleterious(0.01) possibly_damaging(0.804) TCGA-BR-8487-01 20 13279875 13279875 C T ISM1 Silent p.G388G 0.40 TCGA-BR-8487-01 20 13398144 13398144 G A TASP1 Missense_Mutation p.T374M 0.32 deleterious(0) probably_damaging(0.996) TCGA-BR-8487-01 20 13894524 13894524 G A SEL1L2 Silent p.D151D 0.27 TCGA-BR-8487-01 20 14307035 14307035 G A FLRT3 Missense_Mutation p.T373I 0.37 deleterious(0.05) benign(0.01) TCGA-BR-8487-01 20 14307226 14307226 G A FLRT3 Silent p.C309C 0.49 TCGA-BR-8487-01 20 16337073 16337073 C T KIF16B Missense_Mutation p.A1175T 0.16 tolerated(0.55) benign(0.003) TCGA-BR-8487-01 20 17417499 17417499 C T PCSK2 Silent p.L286L 0.46 TCGA-BR-8487-01 20 17640807 17640808 - G RRBP1 Frame_Shift_Ins p.I116Hfs*128 0.19 TCGA-BR-8487-01 20 18142882 18142882 T C CSRP2BP Silent p.H367H 0.08 TCGA-BR-8487-01 20 18794931 18794931 G A SCP2D1 3'UTR 0.33 TCGA-BR-8487-01 20 1961192 1961192 T C PDYN Missense_Mutation p.K181R 0.39 deleterious(0.01) probably_damaging(0.983) TCGA-BR-8487-01 20 20029078 20029078 C T CRNKL1 Missense_Mutation p.A283T 0.36 tolerated(0.23) possibly_damaging(0.846) TCGA-BR-8487-01 20 20258057 20258057 C T C20orf26 Silent p.S917S 0.36 TCGA-BR-8487-01 20 2290970 2290970 C T TGM3 Missense_Mutation p.R110W 0.16 tolerated(0.14) benign(0.012) TCGA-BR-8487-01 20 23017249 23017249 C T SSTR4 Missense_Mutation p.R377C 0.36 tolerated_low_confidence(0.33) benign(0) TCGA-BR-8487-01 20 2321295 2321295 C - TGM3 3'UTR 0.19 TCGA-BR-8487-01 20 23346375 23346375 C T GZF1 Missense_Mutation p.T452M 0.30 tolerated(0.28) possibly_damaging(0.88) TCGA-BR-8487-01 20 23350284 23350284 G A GZF1 Missense_Mutation p.R564H 0.30 deleterious(0) probably_damaging(0.963) TCGA-BR-8487-01 20 23584331 23584331 C T CST9 Missense_Mutation p.R99H 0.14 tolerated(0.12) possibly_damaging(0.679) TCGA-BR-8487-01 20 24988462 24988462 C G ACSS1 Missense_Mutation p.S669T 0.30 tolerated(0.21) benign(0.003) TCGA-BR-8487-01 20 26084106 26084106 A T NCOR1P1 RNA 0.21 TCGA-BR-8487-01 20 2639086 2639086 G A IDH3B 3'UTR 0.43 TCGA-BR-8487-01 20 3025350 3025350 C T GNRH2 Silent p.G60G 0.38 TCGA-BR-8487-01 20 30359471 30359471 T C TPX2 Silent p.C198C 0.30 TCGA-BR-8487-01 20 30436212 30436212 G A FOXS1 5'Flank 0.24 TCGA-BR-8487-01 20 30723902 30723902 C T TM9SF4 Missense_Mutation p.T52I 0.11 deleterious(0) possibly_damaging(0.732) TCGA-BR-8487-01 20 30797988 30797988 T C POFUT1 Missense_Mutation p.F80S 0.43 tolerated(0.11) possibly_damaging(0.809) TCGA-BR-8487-01 20 30803189 30803189 C T POFUT1 Missense_Mutation p.R122W 0.36 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 20 31017153 31017153 A G ASXL1 Missense_Mutation p.K162E 0.18 deleterious(0) probably_damaging(0.993) TCGA-BR-8487-01 20 31387129 31387129 C T DNMT3B Missense_Mutation p.A585V 0.39 deleterious(0) probably_damaging(0.996) TCGA-BR-8487-01 20 3146349 3146349 C T LZTS3 Missense_Mutation p.G373R 0.38 tolerated(0.06) possibly_damaging(0.903) TCGA-BR-8487-01 20 31572905 31572905 C A SUN5 Missense_Mutation p.Q328H 0.14 deleterious(0) probably_damaging(0.995) TCGA-BR-8487-01 20 31998031 31998031 C T SNTA1 Missense_Mutation p.V383M 0.13 deleterious(0) probably_damaging(0.955) TCGA-BR-8487-01 20 3209316 3209316 C A SLC4A11 Missense_Mutation p.G787C 0.08 deleterious(0.03) probably_damaging(0.917) TCGA-BR-8487-01 20 3236681 3236681 T C C20orf194 Missense_Mutation p.K1078E 0.45 deleterious(0.01) possibly_damaging(0.907) TCGA-BR-8487-01 20 33297114 33297114 A G TP53INP2 Missense_Mutation p.M67V 0.27 deleterious(0) benign(0.359) TCGA-BR-8487-01 20 33342540 33342540 T C NCOA6 Missense_Mutation p.N554D 0.42 benign(0.118) TCGA-BR-8487-01 20 33515171 33515171 A T ACSS2 3'UTR 0.44 TCGA-BR-8487-01 20 33763974 33763974 C A PROCR Missense_Mutation p.P109H 0.40 deleterious(0) probably_damaging(0.996) TCGA-BR-8487-01 20 33879731 33879731 G - FAM83C Frame_Shift_Del p.P126Qfs*51 0.10 TCGA-BR-8487-01 20 34025504 34025504 C - GDF5 Frame_Shift_Del p.A69Pfs*18 0.26 TCGA-BR-8487-01 20 34220121 34220121 T C CPNE1 Silent p.V145V 0.24 TCGA-BR-8487-01 20 34241114 34241114 C A RBM12 Nonsense_Mutation p.G711* 0.26 TCGA-BR-8487-01 20 34243253 34243253 G A RBM12 5'UTR 0.32 TCGA-BR-8487-01 20 34300954 34300954 A G RBM39 Silent p.F387F 0.41 TCGA-BR-8487-01 20 34763505 34763505 G A EPB41L1 Silent p.E70E 0.38 TCGA-BR-8487-01 20 35422787 35422787 G A SOGA1 Missense_Mutation p.P1233L 0.11 tolerated(0.68) benign(0.03) TCGA-BR-8487-01 20 35812696 35812696 C T RPN2 Missense_Mutation p.R43C 0.09 deleterious(0.02) probably_damaging(0.932) TCGA-BR-8487-01 20 35858417 35858417 G A RPN2 Silent p.S512S 0.22 TCGA-BR-8487-01 20 36859622 36859622 T C KIAA1755 Missense_Mutation p.Y618C 0.55 tolerated(0.17) benign(0.376) TCGA-BR-8487-01 20 37150172 37150172 C T RALGAPB Missense_Mutation p.R484W 0.33 deleterious(0) possibly_damaging(0.79) TCGA-BR-8487-01 20 37175008 37175008 G A RALGAPB Missense_Mutation p.R946Q 0.27 deleterious(0.01) probably_damaging(0.998) TCGA-BR-8487-01 20 37179730 37179730 C A RALGAPB Missense_Mutation p.P1009H 0.19 deleterious(0.02) possibly_damaging(0.532) TCGA-BR-8487-01 20 37353630 37353630 G A SLC32A1 Missense_Mutation p.G88D 0.28 tolerated(0.68) benign(0) TCGA-BR-8487-01 20 37580943 37580943 C - FAM83D Frame_Shift_Del p.H545Tfs*6 0.24 TCGA-BR-8487-01 20 37601269 37601269 G A DHX35 Missense_Mutation p.C81Y 0.24 deleterious(0.01) probably_damaging(0.935) TCGA-BR-8487-01 20 3843058 3843058 C T MAVS Missense_Mutation p.A208V 0.29 deleterious(0) possibly_damaging(0.607) TCGA-BR-8487-01 20 3893120 3893120 T - PANK2 Frame_Shift_Del p.F419Lfs*31 0.33 TCGA-BR-8487-01 20 39791353 39791353 C T PLCG1 Silent p.S223S 0.31 TCGA-BR-8487-01 20 40113055 40113055 G A CHD6 Missense_Mutation p.P732S 0.43 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 20 40730915 40730915 C T PTPRT Missense_Mutation p.R1188H 0.36 tolerated(0.46) benign(0.055) TCGA-BR-8487-01 20 409676 409676 C T RBCK1 Missense_Mutation p.R464C 0.20 tolerated(0.15) benign(0.036) TCGA-BR-8487-01 20 4163382 4163382 G A SMOX Missense_Mutation p.R419H 0.42 deleterious(0.01) probably_damaging(0.997) TCGA-BR-8487-01 20 4163473 4163473 G A SMOX Silent p.T449T 0.42 TCGA-BR-8487-01 20 42143746 42143746 G A L3MBTL1 Silent p.A178A 0.45 TCGA-BR-8487-01 20 42328423 42328423 C T MYBL2 Silent p.S230S 0.25 TCGA-BR-8487-01 20 42744671 42744671 C T JPH2 Silent p.L548L 0.29 TCGA-BR-8487-01 20 42788504 42788504 C T JPH2 Missense_Mutation p.R308H 0.33 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 20 43109079 43109079 G A TTPAL Missense_Mutation p.R147H 0.31 deleterious(0) probably_damaging(0.991) TCGA-BR-8487-01 20 43545461 43545461 C T PABPC1L Missense_Mutation p.A151V 0.34 deleterious(0) probably_damaging(0.976) TCGA-BR-8487-01 20 43836348 43836348 G A SEMG1 Missense_Mutation p.R137H 0.43 tolerated(1) benign(0.005) TCGA-BR-8487-01 20 44050193 44050193 A C PIGT Missense_Mutation p.I402L 0.15 deleterious(0.04) benign(0.257) TCGA-BR-8487-01 20 44258490 44258490 G - WFDC10A Frame_Shift_Del p.C13Lfs*64 0.12 TCGA-BR-8487-01 20 44441968 44441968 G - UBE2C Intron 0.13 TCGA-BR-8487-01 20 44515671 44515671 C T SPATA25 Missense_Mutation p.A57T 0.08 tolerated_low_confidence(0.18) benign(0.003) TCGA-BR-8487-01 20 44571745 44571745 C A PCIF1 Missense_Mutation p.P228H 0.39 deleterious(0.01) probably_damaging(0.923) TCGA-BR-8487-01 20 44750990 44750990 C T CD40 Silent p.C83C 0.26 TCGA-BR-8487-01 20 45315634 45315634 G - TP53RK Frame_Shift_Del p.L174Wfs*4 0.29 TCGA-BR-8487-01 20 46268504 46268504 G A NCOA3 Missense_Mutation p.R964Q 0.45 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8487-01 20 47253165 47253165 C T PREX1 Missense_Mutation p.V1335M 0.39 deleterious(0.02) possibly_damaging(0.66) TCGA-BR-8487-01 20 47601337 47601337 A G ARFGEF2 Missense_Mutation p.D677G 0.41 deleterious(0) possibly_damaging(0.803) TCGA-BR-8487-01 20 47688880 47688880 G A CSE1L Missense_Mutation p.A276T 0.48 tolerated(0.38) benign(0.216) TCGA-BR-8487-01 20 4773205 4773205 T C RASSF2 Missense_Mutation p.D119G 0.19 tolerated(0.1) benign(0) TCGA-BR-8487-01 20 47843072 47843072 G T DDX27 Missense_Mutation p.G267C 0.21 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 20 49366212 49366212 T C PARD6B Silent p.S102S 0.24 TCGA-BR-8487-01 20 50226683 50226683 A G ATP9A Missense_Mutation p.Y865H 0.41 tolerated(0.1) benign(0.092) TCGA-BR-8487-01 20 50400983 50400983 C - SALL4 Frame_Shift_Del p.V995Ffs*14 0.33 TCGA-BR-8487-01 20 52199236 52199236 C T ZNF217 Missense_Mutation p.A44T 0.36 tolerated(1) benign(0.002) TCGA-BR-8487-01 20 54824415 54824415 C T MC3R Silent p.C172C 0.30 TCGA-BR-8487-01 20 54961466 54961466 G A AURKA Missense_Mutation p.R56C 0.40 deleterious(0) possibly_damaging(0.896) TCGA-BR-8487-01 20 55108475 55108475 A T FAM209B Missense_Mutation p.R26S 0.50 deleterious(0.01) benign(0.426) TCGA-BR-8487-01 20 55777645 55777645 G A BMP7 Missense_Mutation p.L216F 0.21 tolerated(0.06) benign(0.228) TCGA-BR-8487-01 20 55918621 55918621 A - SPO11 3'UTR 0.16 TCGA-BR-8487-01 20 57042284 57042284 G A APCDD1L Missense_Mutation p.P207S 0.42 tolerated(0.23) possibly_damaging(0.531) TCGA-BR-8487-01 20 57415808 57415808 G A RP4-806M20.3 5'Flank 0.42 TCGA-BR-8487-01 20 57485417 57485417 C T GNAS Silent p.R976R 0.30 TCGA-BR-8487-01 20 58348375 58348375 G A PHACTR3 Missense_Mutation p.D265N 0.41 tolerated(0.33) benign(0.265) TCGA-BR-8487-01 20 58443592 58443592 T C SYCP2 Missense_Mutation p.I1288M 0.54 tolerated(1) benign(0.001) TCGA-BR-8487-01 20 58571523 58571523 T C CDH26 Intron 0.38 TCGA-BR-8487-01 20 6021784 6021784 C T LRRN4 Missense_Mutation p.A703T 0.33 tolerated(0.13) benign(0.028) TCGA-BR-8487-01 20 60485514 60485514 G A CDH4 Missense_Mutation p.V409M 0.11 deleterious(0.04) possibly_damaging(0.87) TCGA-BR-8487-01 20 60791601 60791601 C T HRH3 Missense_Mutation p.G267R 0.30 tolerated(0.37) benign(0.008) TCGA-BR-8487-01 20 60883825 60883825 G A ADRM1 3'UTR 0.41 TCGA-BR-8487-01 20 60885779 60885780 - G LAMA5 Frame_Shift_Ins p.Q3463Pfs*80 0.29 TCGA-BR-8487-01 20 60902981 60902981 G A LAMA5 Missense_Mutation p.H1580Y 0.33 possibly_damaging(0.781) TCGA-BR-8487-01 20 61048529 61048529 C T GATA5 Missense_Mutation p.C210Y 0.29 deleterious(0) probably_damaging(0.999) TCGA-BR-8487-01 20 61288032 61288032 C T SLCO4A1 Missense_Mutation p.R76W 0.32 deleterious(0) possibly_damaging(0.586) TCGA-BR-8487-01 20 61431073 61431073 C - MRGBP 3'UTR 0.31 TCGA-BR-8487-01 20 61809880 61809880 A G MIR124-3 RNA 0.18 TCGA-BR-8487-01 20 61945176 61945176 C T COL20A1 Missense_Mutation p.P764L 0.17 deleterious(0) probably_damaging(0.99) TCGA-BR-8487-01 20 62196274 62196274 C T HELZ2 Missense_Mutation p.G1301S 0.10 tolerated(0.11) benign(0.017) TCGA-BR-8487-01 20 62328129 62328129 G A RTEL1 3'Flank 0.43 TCGA-BR-8487-01 20 62493364 62493364 C T ABHD16B Silent p.F157F 0.30 TCGA-BR-8487-01 20 62575950 62575950 G A UCKL1 Silent p.F264F 0.43 TCGA-BR-8487-01 20 62701180 62701180 C A TCEA2 Intron 0.08 TCGA-BR-8487-01 20 62737941 62737941 C T NPBWR2 Missense_Mutation p.V82M 0.09 tolerated(0.25) probably_damaging(0.978) TCGA-BR-8487-01 20 9546626 9546626 C T PAK7 Missense_Mutation p.A466T 0.36 deleterious(0) probably_damaging(0.997) TCGA-BR-8487-01 21 16339964 16339964 G A NRIP1 Missense_Mutation p.H184Y 0.35 deleterious(0) probably_damaging(0.995) TCGA-BR-8487-01 21 18981391 18981391 T - BTG3 Frame_Shift_Del p.E25Rfs*10 0.34 TCGA-BR-8487-01 21 30426572 30426572 A - USP16 3'UTR 0.29 TCGA-BR-8487-01 21 31859629 31859629 G A KRTAP19-2 Silent p.C13C 0.21 TCGA-BR-8487-01 21 32526612 32526612 G A TIAM1 Missense_Mutation p.R1042C 0.45 deleterious(0) probably_damaging(0.927) TCGA-BR-8487-01 21 33068890 33068890 C A SCAF4 Missense_Mutation p.Q317H 0.41 probably_damaging(0.929) TCGA-BR-8487-01 21 35195847 35195847 C T ITSN1 Nonsense_Mutation p.Q1025* 0.42 TCGA-BR-8487-01 21 35237536 35237536 G A ITSN1 Silent p.P1324P 0.19 TCGA-BR-8487-01 21 37417937 37417937 C T SETD4 Silent p.P223P 0.42 TCGA-BR-8487-01 21 37586451 37586452 - T DOPEY2 Frame_Shift_Ins p.E329* 0.36 TCGA-BR-8487-01 21 37623582 37623582 G A DOPEY2 Silent p.K1707K 0.30 TCGA-BR-8487-01 21 37728931 37728931 G A MORC3 Missense_Mutation p.A373T 0.23 tolerated(0.3) possibly_damaging(0.574) TCGA-BR-8487-01 21 37732303 37732303 G A MORC3 Missense_Mutation p.R420Q 0.29 deleterious(0) probably_damaging(0.993) TCGA-BR-8487-01 21 38610871 38610871 G A DSCR3 Missense_Mutation p.P81S 0.37 tolerated(0.32) benign(0.091) TCGA-BR-8487-01 21 38853058 38853059 - A DYRK1A Frame_Shift_Ins p.N151Kfs*12 0.26 TCGA-BR-8487-01 21 39086717 39086717 G A KCNJ6 Missense_Mutation p.S248L 0.37 tolerated(0.26) benign(0) TCGA-BR-8487-01 21 39087187 39087187 G A KCNJ6 Silent p.F91F 0.39 TCGA-BR-8487-01 21 41416137 41416137 T A DSCAM Missense_Mutation p.T1751S 0.33 deleterious(0.03) probably_damaging(0.972) TCGA-BR-8487-01 21 41514615 41514615 G - DSCAM Frame_Shift_Del p.E1093Kfs*6 0.32 TCGA-BR-8487-01 21 42780117 42780117 C T MX2 Missense_Mutation p.A702V 0.20 deleterious(0.01) probably_damaging(0.954) TCGA-BR-8487-01 21 43230570 43230570 G A PRDM15 Silent p.C1230C 0.38 TCGA-BR-8487-01 21 43319229 43319229 G A C2CD2 Silent p.P601P 0.35 TCGA-BR-8487-01 21 43897403 43897403 T C RSPH1 Missense_Mutation p.E242G 0.41 deleterious(0.02) benign(0.293) TCGA-BR-8487-01 21 45033778 45033778 C G HSF2BP Missense_Mutation p.V209L 0.38 tolerated(0.31) benign(0.115) TCGA-BR-8487-01 21 45499951 45499951 C T TRAPPC10 Missense_Mutation p.R556C 0.09 deleterious(0) probably_damaging(0.988) TCGA-BR-8487-01 21 45550682 45550682 C T PWP2 3'UTR 0.37 TCGA-BR-8487-01 21 45744439 45744439 G - PFKL Frame_Shift_Del p.G574Vfs*9 0.33 TCGA-BR-8487-01 21 45826499 45826499 T G TRPM2 Missense_Mutation p.L938R 0.47 deleterious(0) probably_damaging(0.967) TCGA-BR-8487-01 21 45846948 45846948 C T TRPM2 Missense_Mutation p.R1310C 0.29 deleterious(0) probably_damaging(0.953) TCGA-BR-8487-01 21 45876898 45876898 G A LRRC3 Missense_Mutation p.R124H 0.24 tolerated(0.25) benign(0.021) TCGA-BR-8487-01 21 45919682 45919682 C A TSPEAR Missense_Mutation p.R665L 0.56 deleterious(0.01) benign(0.018) TCGA-BR-8487-01 21 46078204 46078204 C T KRTAP12-3 3'UTR 0.30 TCGA-BR-8487-01 21 46604910 46604910 C T ADARB1 Missense_Mutation p.T530M 0.22 deleterious(0) benign(0.068) TCGA-BR-8487-01 21 46951974 46951974 G A SLC19A1 Missense_Mutation p.T93M 0.21 deleterious(0) probably_damaging(0.953) TCGA-BR-8487-01 21 47684123 47684123 C A MCM3AP Silent p.A1081A 0.52 TCGA-BR-8487-01 21 47754606 47754606 G A PCNT Missense_Mutation p.S188N 0.29 benign(0.081) TCGA-BR-8487-01 21 47832851 47832851 C T PCNT Missense_Mutation p.S2032L 0.39 benign(0.008) TCGA-BR-8487-01 22 17072817 17072817 C G CCT8L2 Silent p.L208L 0.07 TCGA-BR-8487-01 22 17601013 17601013 C T CECR6 Silent p.T335T 0.43 TCGA-BR-8487-01 22 17619093 17619093 C A CECR5 Missense_Mutation p.G364C 0.32 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 22 17670868 17670868 T C CECR1 Silent p.R312R 0.36 TCGA-BR-8487-01 22 18028863 18028863 T - CECR2 Frame_Shift_Del p.L1276* 0.28 TCGA-BR-8487-01 22 18209583 18209583 G A BCL2L13 Nonsense_Mutation p.W247* 0.09 TCGA-BR-8487-01 22 18893922 18893922 C T DGCR6 Missense_Mutation p.A12V 0.36 tolerated(0.38) benign(0.007) TCGA-BR-8487-01 22 19120029 19120029 T C TSSK2 3'UTR 0.37 TCGA-BR-8487-01 22 19839687 19839687 G A C22orf29 Missense_Mutation p.A33V 0.35 tolerated_low_confidence(0.21) benign(0.003) TCGA-BR-8487-01 22 20796663 20796663 G A KLHL22 Silent p.H534H 0.28 TCGA-BR-8487-01 22 22300339 22300339 G A PPM1F Nonsense_Mutation p.Q28* 0.31 TCGA-BR-8487-01 22 22300347 22300347 G A PPM1F Missense_Mutation p.T25M 0.29 tolerated(0.07) benign(0.014) TCGA-BR-8487-01 22 23438280 23438280 C T GNAZ Missense_Mutation p.A133V 0.41 tolerated(0.12) benign(0.222) TCGA-BR-8487-01 22 23596096 23596096 C T BCR Missense_Mutation p.P464S 0.40 deleterious_low_confidence(0.04) possibly_damaging(0.857) TCGA-BR-8487-01 22 23656168 23656168 G A BCR Silent p.P1157P 0.32 TCGA-BR-8487-01 22 24039376 24039376 G A RGL4 Missense_Mutation p.G394R 0.24 deleterious(0) probably_damaging(0.974) TCGA-BR-8487-01 22 24583316 24583316 G A SUSD2 Missense_Mutation p.G597R 0.33 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 22 24726395 24726395 C T SPECC1L Missense_Mutation p.R798C 0.20 deleterious(0.01) probably_damaging(0.912) TCGA-BR-8487-01 22 25019812 25019812 G A GGT1 Missense_Mutation p.V317I 0.32 tolerated(0.43) benign(0.08) TCGA-BR-8487-01 22 25024766 25024766 C T GGT1 Missense_Mutation p.A557V 0.33 tolerated(0.54) benign(0.027) TCGA-BR-8487-01 22 25155856 25155856 C G PIWIL3 Missense_Mutation p.G68A 0.21 tolerated(0.53) benign(0.001) TCGA-BR-8487-01 22 25617439 25617439 C A CRYBB2 Missense_Mutation p.L15I 0.17 tolerated(0.42) benign(0.001) TCGA-BR-8487-01 22 26859915 26859915 G A HPS4 Silent p.L561L 0.43 TCGA-BR-8487-01 22 26860019 26860019 C T HPS4 Missense_Mutation p.S526N 0.37 tolerated(0.28) benign(0.001) TCGA-BR-8487-01 22 27026389 27026389 C T CRYBA4 Missense_Mutation p.R177W 0.51 tolerated(0.05) possibly_damaging(0.827) TCGA-BR-8487-01 22 29445399 29445399 G A ZNRF3 Silent p.P410P 0.35 TCGA-BR-8487-01 22 29709555 29709555 G A RASL10A Missense_Mutation p.P116L 0.21 tolerated(0.31) benign(0.095) TCGA-BR-8487-01 22 30416736 30416736 C T MTMR3 Missense_Mutation p.R1030C 0.11 deleterious(0) probably_damaging(0.999) TCGA-BR-8487-01 22 31486953 31486953 C - SMTN Frame_Shift_Del p.A318Pfs*39 0.28 TCGA-BR-8487-01 22 31523368 31523368 G A INPP5J Missense_Mutation p.R178H 0.32 deleterious(0.01) probably_damaging(1) TCGA-BR-8487-01 22 31672785 31672785 G C LIMK2 Missense_Mutation p.G574R 0.35 deleterious_low_confidence(0) benign(0.35) TCGA-BR-8487-01 22 32218710 32218710 A G DEPDC5 Missense_Mutation p.M680V 0.29 tolerated(0.29) benign(0.001) TCGA-BR-8487-01 22 32589205 32589205 A - RFPL2 Intron 0.09 TCGA-BR-8487-01 22 32841856 32841856 C T BPIFC Missense_Mutation p.A168T 0.47 tolerated(0.18) probably_damaging(0.948) TCGA-BR-8487-01 22 33255321 33255321 G - TIMP3 Frame_Shift_Del p.A199Pfs*28 0.24 TCGA-BR-8487-01 22 33673216 33673216 C T LARGE Missense_Mutation p.A635T 0.62 deleterious(0.01) probably_damaging(0.97) TCGA-BR-8487-01 22 35481594 35481594 G T ISX Missense_Mutation p.G216C 0.07 deleterious(0) possibly_damaging(0.853) TCGA-BR-8487-01 22 36912576 36912576 G A EIF3D Silent p.N385N 0.08 TCGA-BR-8487-01 22 37457620 37457620 G C KCTD17 Missense_Mutation p.V259L 0.65 tolerated_low_confidence(0.68) benign(0.001) TCGA-BR-8487-01 22 37462147 37462147 G A TMPRSS6 Silent p.I803I 0.46 TCGA-BR-8487-01 22 37770482 37770482 G A ELFN2 Missense_Mutation p.R365C 0.21 deleterious(0) possibly_damaging(0.886) TCGA-BR-8487-01 22 38014500 38014500 G A GGA1 Missense_Mutation p.E84K 0.14 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 22 38165112 38165112 C T TRIOBP Missense_Mutation p.A2218V 0.29 deleterious(0.04) possibly_damaging(0.477) TCGA-BR-8487-01 22 38201808 38201808 G A H1F0 Missense_Mutation p.G86E 0.39 deleterious(0) probably_damaging(0.994) TCGA-BR-8487-01 22 38481351 38481351 G A BAIAP2L2 Missense_Mutation p.R516C 0.36 deleterious(0) probably_damaging(0.999) TCGA-BR-8487-01 22 38565404 38565404 G T PLA2G6 Silent p.T10T 0.38 TCGA-BR-8487-01 22 38690122 38690122 G A CSNK1E Missense_Mutation p.A404V 0.40 deleterious_low_confidence(0.04) benign(0.028) TCGA-BR-8487-01 22 39262535 39262535 G A CBX6 Silent p.S306S 0.37 TCGA-BR-8487-01 22 39263061 39263061 C T CBX6 Missense_Mutation p.R131H 0.33 deleterious(0) possibly_damaging(0.84) TCGA-BR-8487-01 22 39529913 39529913 G A CBX7 Missense_Mutation p.R247C 0.44 deleterious(0.01) probably_damaging(0.996) TCGA-BR-8487-01 22 39811635 39811635 G A TAB1 Missense_Mutation p.D101N 0.25 deleterious(0.02) benign(0.041) TCGA-BR-8487-01 22 39918644 39918644 A G ATF4 3'UTR 0.36 TCGA-BR-8487-01 22 41613088 41613088 C T L3MBTL2 Intron 0.20 TCGA-BR-8487-01 22 41647047 41647047 C T RANGAP1 Missense_Mutation p.E483K 0.09 deleterious(0.05) possibly_damaging(0.724) TCGA-BR-8487-01 22 41676983 41676983 C T RANGAP1 Silent p.Q22Q 0.38 TCGA-BR-8487-01 22 41920925 41920927 AAG - ACO2 In_Frame_Del p.K521del 0.33 TCGA-BR-8487-01 22 42139162 42139162 G A MEI1 Silent p.A470A 0.29 TCGA-BR-8487-01 22 42141893 42141893 G A MEI1 Missense_Mutation p.A515T 0.48 deleterious(0) probably_damaging(0.98) TCGA-BR-8487-01 22 42293125 42293125 C - SREBF2 Frame_Shift_Del p.P857Hfs*55 0.13 TCGA-BR-8487-01 22 42473684 42473684 C T FAM109B Silent p.R129R 0.46 TCGA-BR-8487-01 22 42538535 42538535 C A NDUFA6-AS1 3'Flank 0.44 TCGA-BR-8487-01 22 43015861 43015861 C T CYB5R3 Missense_Mutation p.G308D 0.48 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 22 43019833 43019833 C T CYB5R3 Missense_Mutation p.R265H 0.31 deleterious(0.03) possibly_damaging(0.888) TCGA-BR-8487-01 22 44287022 44287022 G A PNPLA5 Silent p.L116L 0.42 TCGA-BR-8487-01 22 44385033 44385033 A G SAMM50 Missense_Mutation p.H373R 0.37 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 22 45243858 45243858 C T ARHGAP8 Missense_Mutation p.R348C 0.08 deleterious(0.02) possibly_damaging(0.892) TCGA-BR-8487-01 22 45309752 45309752 C T PHF21B Missense_Mutation p.A261T 0.42 tolerated(0.07) benign(0.031) TCGA-BR-8487-01 22 46742425 46742425 G A TRMU Silent p.R154R 0.21 TCGA-BR-8487-01 22 46931883 46931884 - C CELSR1 Frame_Shift_Ins p.A396Rfs*140 0.25 TCGA-BR-8487-01 22 47069661 47069661 G A GRAMD4 Missense_Mutation p.G445D 0.36 deleterious(0.04) possibly_damaging(0.788) TCGA-BR-8487-01 22 50217466 50217466 T A BRD1 Missense_Mutation p.E167V 0.40 deleterious(0) probably_damaging(0.937) TCGA-BR-8487-01 22 50563916 50563916 C T MOV10L1 Silent p.S555S 0.41 TCGA-BR-8487-01 22 50689187 50689187 C T HDAC10 Intron 0.42 TCGA-BR-8487-01 22 50876602 50876602 G A PPP6R2 Splice_Site p.X588_splice 0.35 TCGA-BR-8487-01 22 50892959 50892959 G T SBF1 Silent p.A1675A 0.10 TCGA-BR-8487-01 22 50893457 50893457 G A SBF1 Missense_Mutation p.R1557C 0.31 deleterious(0) probably_damaging(0.999) TCGA-BR-8487-01 22 50898756 50898756 G - SBF1 Frame_Shift_Del p.S1077Afs*28 0.32 TCGA-BR-8487-01 22 50925882 50925882 C A MIOX Missense_Mutation p.F28L 0.41 deleterious(0) possibly_damaging(0.624) TCGA-BR-8487-01 22 51117057 51117057 G A SHANK3 Silent p.T128T 0.38 TCGA-BR-8487-01 2 100009432 100009432 C T EIF5B Silent p.N917N 0.18 TCGA-BR-8487-01 2 100210468 100210468 G A AFF3 Missense_Mutation p.A577V 0.08 deleterious(0.05) benign(0.007) TCGA-BR-8487-01 2 10140799 10140800 - G GRHL1 Frame_Shift_Ins p.S610Vfs*68 0.10 TCGA-BR-8487-01 2 101869670 101869670 G A CNOT11 Missense_Mutation p.G82S 0.41 tolerated(1) benign(0.002) TCGA-BR-8487-01 2 102644749 102644749 G - IL1R2 Frame_Shift_Del p.G366Efs*18 0.24 TCGA-BR-8487-01 2 103125352 103125352 C A SLC9A4 Missense_Mutation p.T483N 0.08 deleterious(0.02) probably_damaging(0.999) TCGA-BR-8487-01 2 10581970 10581970 G A ODC1 Silent p.H333H 0.30 TCGA-BR-8487-01 2 107459975 107459975 G C ST6GAL2 Silent p.P153P 0.25 TCGA-BR-8487-01 2 108627289 108627289 G T SLC5A7 Missense_Mutation p.G572V 0.30 tolerated_low_confidence(0.48) benign(0.021) TCGA-BR-8487-01 2 108863760 108863760 A G SULT1C3 Missense_Mutation p.E37G 0.51 tolerated(0.27) benign(0.083) TCGA-BR-8487-01 2 108917317 108917317 C T SULT1C2 Intron 0.31 TCGA-BR-8487-01 2 110849315 110849315 G A MALL Silent p.A46A 0.18 TCGA-BR-8487-01 2 110926098 110926098 T - NPHP1 Frame_Shift_Del p.K185Nfs*7 0.40 TCGA-BR-8487-01 2 113940629 113940629 C T PSD4 Missense_Mutation p.T199M 0.28 deleterious_low_confidence(0.05) benign(0.006) TCGA-BR-8487-01 2 113950909 113950909 G A PSD4 Missense_Mutation p.R665H 0.45 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 2 113993122 113993122 G - PAX8 Frame_Shift_Del p.E313Rfs*113 0.31 TCGA-BR-8487-01 2 120020822 120020822 G A STEAP3 Missense_Mutation p.A469T 0.40 tolerated(1) benign(0.004) TCGA-BR-8487-01 2 121728140 121728140 C T GLI2 Silent p.T339T 0.42 TCGA-BR-8487-01 2 127821515 127821515 C T BIN1 Nonsense_Mutation p.W231* 0.21 TCGA-BR-8487-01 2 127944877 127944877 G - CYP27C1 Frame_Shift_Del p.I364Sfs*14 0.20 TCGA-BR-8487-01 2 128030506 128030506 C - ERCC3 Frame_Shift_Del p.E588Kfs*23 0.25 TCGA-BR-8487-01 2 128238676 128238676 T - IWS1 Frame_Shift_Del p.S802Afs*7 0.30 TCGA-BR-8487-01 2 128770681 128770681 G A SAP130 Silent p.L249L 0.38 TCGA-BR-8487-01 2 128772415 128772415 C A SAP130 Missense_Mutation p.G220V 0.21 deleterious_low_confidence(0.01) probably_damaging(0.981) TCGA-BR-8487-01 2 128886646 128886646 C T UGGT1 Silent p.L424L 0.50 TCGA-BR-8487-01 2 131487357 131487357 G A GPR148 Silent p.P211P 0.42 TCGA-BR-8487-01 2 131976372 131976372 T C POTEE Missense_Mutation p.Y133H 0.09 deleterious_low_confidence(0) benign(0.403) TCGA-BR-8487-01 2 135621077 135621077 C T ACMSD Missense_Mutation p.A121V 0.45 deleterious(0.04) possibly_damaging(0.624) TCGA-BR-8487-01 2 135848616 135848616 T C RAB3GAP1 Missense_Mutation p.F67L 0.35 deleterious(0.01) benign(0.297) TCGA-BR-8487-01 2 136620237 136620237 C T MCM6 Missense_Mutation p.R387Q 0.28 deleterious(0) possibly_damaging(0.78) TCGA-BR-8487-01 2 139428706 139428707 - T NXPH2 Frame_Shift_Ins p.T194Nfs*13 0.28 TCGA-BR-8487-01 2 141260673 141260673 C A LRP1B Splice_Site p.X2841_splice 0.39 TCGA-BR-8487-01 2 141609292 141609292 T C LRP1B Missense_Mutation p.N1547S 0.40 benign(0) TCGA-BR-8487-01 2 141946087 141946087 G A LRP1B Missense_Mutation p.R306W 0.42 possibly_damaging(0.898) TCGA-BR-8487-01 2 148683686 148683686 A - ACVR2A Frame_Shift_Del p.K437Rfs*5 0.66 TCGA-BR-8487-01 2 149227817 149227817 G A MBD5 Missense_Mutation p.V769I 0.47 tolerated(0.73) benign(0.198) TCGA-BR-8487-01 2 149247420 149247420 A G MBD5 Missense_Mutation p.K1174E 0.44 deleterious_low_confidence(0) unknown(0) TCGA-BR-8487-01 2 152320541 152320541 A - RIF1 Frame_Shift_Del p.K1505Rfs*18 0.32 TCGA-BR-8487-01 2 152500374 152500374 G A NEB Silent p.S2638S 0.43 TCGA-BR-8487-01 2 155157975 155157975 T C GALNT13 Silent p.H343H 0.50 TCGA-BR-8487-01 2 155711558 155711559 - A KCNJ3 Frame_Shift_Ins p.L416Tfs*39 0.29 TCGA-BR-8487-01 2 157186467 157186467 A G NR4A2 Silent p.L78L 0.34 TCGA-BR-8487-01 2 158390398 158390398 T C ACVR1C 3'UTR 0.21 TCGA-BR-8487-01 2 159313006 159313006 A G CCDC148 5'UTR 0.42 TCGA-BR-8487-01 2 160086261 160086261 G A TANC1 Missense_Mutation p.E1442K 0.36 deleterious_low_confidence(0) possibly_damaging(0.581) TCGA-BR-8487-01 2 160676263 160676263 C A LY75-CD302 Missense_Mutation p.S1376I 0.36 deleterious(0) probably_damaging(0.975) TCGA-BR-8487-01 2 160734894 160734894 G A LY75-CD302 Missense_Mutation p.A572V 0.30 tolerated(0.2) probably_damaging(0.971) TCGA-BR-8487-01 2 162275407 162275407 T A TBR1 Missense_Mutation p.V325E 0.46 deleterious(0) probably_damaging(0.988) TCGA-BR-8487-01 2 162280648 162280648 G A TBR1 Silent p.P653P 0.58 TCGA-BR-8487-01 2 163003894 163003895 - A GCG Frame_Shift_Ins p.V75Cfs*13 0.19 TCGA-BR-8487-01 2 1652960 1652960 G - PXDN Frame_Shift_Del p.N865Mfs*25 0.27 TCGA-BR-8487-01 2 165477753 165477753 C T GRB14 Missense_Mutation p.A23T 0.26 deleterious_low_confidence(0.02) probably_damaging(0.956) TCGA-BR-8487-01 2 165542441 165542441 G A COBLL1 3'UTR 0.39 TCGA-BR-8487-01 2 165755181 165755181 C T SLC38A11 Silent p.L329L 0.31 TCGA-BR-8487-01 2 165984441 165984441 A - SCN3A Frame_Shift_Del p.F1031Lfs*7 0.29 TCGA-BR-8487-01 2 166165865 166165865 T C SCN2A Intron 0.46 TCGA-BR-8487-01 2 166246013 166246013 G A SCN2A Silent p.T1899T 0.36 TCGA-BR-8487-01 2 167168247 167168247 G - SCN9A Frame_Shift_Del p.P7Qfs*83 0.32 TCGA-BR-8487-01 2 167262953 167262953 C T SCN7A Missense_Mutation p.V1396I 0.39 tolerated(1) benign(0) TCGA-BR-8487-01 2 169417819 169417819 T C CERS6 Missense_Mutation p.F132L 0.39 deleterious(0.01) probably_damaging(0.994) TCGA-BR-8487-01 2 169699563 169699563 A - NOSTRIN Frame_Shift_Del p.N191Tfs*9 0.38 TCGA-BR-8487-01 2 169781256 169781256 G A ABCB11 Missense_Mutation p.R1226C 0.09 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 2 170135979 170135979 G A LRP2 Missense_Mutation p.R490C 0.30 benign(0.262) TCGA-BR-8487-01 2 170367065 170367065 C T KLHL41 Silent p.F259F 0.40 TCGA-BR-8487-01 2 170557504 170557504 A G PHOSPHO2 Missense_Mutation p.D8G 0.28 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 2 176856973 176856973 A - KIAA1715 Frame_Shift_Del p.F81Lfs*5 0.16 TCGA-BR-8487-01 2 17697088 17697088 A - RAD51AP2 Frame_Shift_Del p.P866Qfs*13 0.26 TCGA-BR-8487-01 2 176974001 176974001 C T HOXD11 3'UTR 0.45 TCGA-BR-8487-01 2 176987530 176987530 T A HOXD9 Missense_Mutation p.S12T 0.16 tolerated(0.05) probably_damaging(0.992) TCGA-BR-8487-01 2 178482964 178482964 C A TTC30A Missense_Mutation p.G156C 0.36 tolerated(0.13) possibly_damaging(0.563) TCGA-BR-8487-01 2 179326046 179326046 G A DFNB59 3'UTR 0.30 TCGA-BR-8487-01 2 179355475 179355475 A C PLEKHA3 Silent p.R83R 0.45 TCGA-BR-8487-01 2 179398170 179398170 G - TTN Frame_Shift_Del p.P34391Hfs*4 0.34 TCGA-BR-8487-01 2 179403573 179403573 T C TTN Intron 0.39 TCGA-BR-8487-01 2 179449370 179449370 T - TTN Intron 0.08 TCGA-BR-8487-01 2 179458084 179458084 C G TTN Missense_Mutation p.K19617N 0.46 TCGA-BR-8487-01 2 179459139 179459139 G A TTN Missense_Mutation p.A19361V 0.43 TCGA-BR-8487-01 2 179484491 179484491 A G TTN Missense_Mutation p.V15518A 0.32 TCGA-BR-8487-01 2 179500703 179500703 G A TTN Silent p.C13865C 0.29 TCGA-BR-8487-01 2 183387124 183387124 A G PDE1A 5'UTR 0.28 TCGA-BR-8487-01 2 187533573 187533573 T C ITGAV Missense_Mutation p.Y840H 0.33 deleterious(0.01) probably_damaging(1) TCGA-BR-8487-01 2 187693167 187693167 T - ZSWIM2 Frame_Shift_Del p.K482Nfs*2 0.26 TCGA-BR-8487-01 2 187703885 187703885 G T ZSWIM2 Missense_Mutation p.L99M 0.09 deleterious(0.02) benign(0.167) TCGA-BR-8487-01 2 190557866 190557866 T C ANKAR Missense_Mutation p.Y424H 0.29 tolerated(1) benign(0.002) TCGA-BR-8487-01 2 191819482 191819482 T C GLS Silent p.G597G 0.39 TCGA-BR-8487-01 2 192700726 192700726 G A SDPR Silent p.L401L 0.11 TCGA-BR-8487-01 2 196753019 196753019 A T DNAH7 Missense_Mutation p.V1790D 0.50 deleterious(0) benign(0.197) TCGA-BR-8487-01 2 198570830 198570830 C - MARS2 Frame_Shift_Del p.E236Nfs*6 0.27 TCGA-BR-8487-01 2 200137088 200137088 G A SATB2 Missense_Mutation p.A683V 0.37 tolerated_low_confidence(0.26) benign(0.001) TCGA-BR-8487-01 2 201685969 201685970 AG - BZW1 Frame_Shift_Del p.S423Cfs*4 0.25 TCGA-BR-8487-01 2 202050593 202050593 G - CASP10 Frame_Shift_Del p.V33Sfs*12 0.26 TCGA-BR-8487-01 2 202131222 202131222 A G CASP8 Missense_Mutation p.R64G 0.38 tolerated(0.05) benign(0.005) TCGA-BR-8487-01 2 202498046 202498046 C T TMEM237 Missense_Mutation p.R128Q 0.50 deleterious(0.01) probably_damaging(0.959) TCGA-BR-8487-01 2 202510002 202510002 T C MPP4 Missense_Mutation p.I615M 0.30 deleterious(0.01) possibly_damaging(0.739) TCGA-BR-8487-01 2 202588083 202588083 G A ALS2 Silent p.Y1198Y 0.44 TCGA-BR-8487-01 2 203420130 203420130 A - BMPR2 Frame_Shift_Del p.N583Tfs*44 0.30 TCGA-BR-8487-01 2 20402089 20402090 - C SDC1 3'UTR 0.29 TCGA-BR-8487-01 2 207172565 207172565 A - ZDBF2 Frame_Shift_Del p.N1106Ifs*11 0.28 TCGA-BR-8487-01 2 20824508 20824508 G A HS1BP3 Silent p.D256D 0.40 TCGA-BR-8487-01 2 209007411 209007411 G A CRYGB Missense_Mutation p.A160V 0.35 deleterious(0.03) probably_damaging(0.966) TCGA-BR-8487-01 2 209110079 209110079 T C IDH1 Missense_Mutation p.T162A 0.30 tolerated_low_confidence(0.17) benign(0) TCGA-BR-8487-01 2 209204275 209204275 C T PIKFYVE Silent p.S1602S 0.48 TCGA-BR-8487-01 2 210881345 210881345 A G RPE Missense_Mutation p.M153V 0.42 deleterious(0) possibly_damaging(0.887) TCGA-BR-8487-01 2 21234835 21234835 T G APOB Missense_Mutation p.K1635N 0.37 possibly_damaging(0.638) TCGA-BR-8487-01 2 212522689 212522689 G A ERBB4 Intron 0.43 TCGA-BR-8487-01 2 21255259 21255259 G A APOB Missense_Mutation p.A440V 0.25 probably_damaging(0.998) TCGA-BR-8487-01 2 215866295 215866295 G A ABCA12 Silent p.N950N 0.31 TCGA-BR-8487-01 2 216279489 216279489 A - FN1 Intron 0.29 TCGA-BR-8487-01 2 216292965 216292965 G A FN1 Missense_Mutation p.T261I 0.09 tolerated(0.26) probably_damaging(0.999) TCGA-BR-8487-01 2 216992351 216992351 A - XRCC5 Frame_Shift_Del p.N298Mfs*9 0.18 TCGA-BR-8487-01 2 217069075 217069075 G A XRCC5 Missense_Mutation p.D714N 0.30 tolerated(0.26) benign(0.009) TCGA-BR-8487-01 2 217525351 217525351 G - IGFBP2 Frame_Shift_Del p.G173Efs*13 0.23 TCGA-BR-8487-01 2 217526674 217526674 C A IGFBP2 Missense_Mutation p.L256M 0.52 deleterious(0.02) possibly_damaging(0.884) TCGA-BR-8487-01 2 218713553 218713553 G A TNS1 Missense_Mutation p.R438W 0.34 deleterious(0) possibly_damaging(0.656) TCGA-BR-8487-01 2 219137529 219137529 G T PNKD Intron 0.45 TCGA-BR-8487-01 2 219757584 219757584 A T WNT10A Missense_Mutation p.E282V 0.33 deleterious(0) possibly_damaging(0.898) TCGA-BR-8487-01 2 219878669 219878669 C T CCDC108 Missense_Mutation p.D1234N 0.48 deleterious(0) probably_damaging(0.998) TCGA-BR-8487-01 2 219900228 219900228 G T CCDC108 Silent p.S172S 0.41 TCGA-BR-8487-01 2 220012447 220012447 G A NHEJ1 Missense_Mutation p.A154V 0.26 tolerated(0.1) possibly_damaging(0.896) TCGA-BR-8487-01 2 220349122 220349122 C - SPEG Frame_Shift_Del p.R2315Gfs*38 0.28 TCGA-BR-8487-01 2 220404387 220404387 G A CHPF Silent p.S682S 0.20 TCGA-BR-8487-01 2 220406868 220406868 G A CHPF Silent p.L120L 0.33 TCGA-BR-8487-01 2 223168661 223168661 C T CCDC140 Missense_Mutation p.P14S 0.50 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-BR-8487-01 2 223791735 223791735 C T ACSL3 Silent p.S431S 0.25 TCGA-BR-8487-01 2 223917787 223917787 G - KCNE4 Frame_Shift_Del p.E82Rfs*3 0.08 TCGA-BR-8487-01 2 226446794 226446794 T C NYAP2 Missense_Mutation p.S221P 0.36 tolerated(0.08) benign(0.019) TCGA-BR-8487-01 2 226447029 226447029 C A NYAP2 Missense_Mutation p.P299H 0.31 deleterious(0.01) probably_damaging(0.972) TCGA-BR-8487-01 2 227662195 227662195 G - IRS1 Frame_Shift_Del p.S421Afs*42 0.30 TCGA-BR-8487-01 2 230020598 230020598 G A PID1 Missense_Mutation p.P69L 0.38 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-BR-8487-01 2 230910788 230910788 C T SLC16A14 Missense_Mutation p.V352I 0.41 tolerated(0.56) benign(0.01) TCGA-BR-8487-01 2 231175530 231175530 G T SP140 Missense_Mutation p.E749D 0.24 deleterious(0) probably_damaging(0.998) TCGA-BR-8487-01 2 233322328 233322328 T G ALPI Silent p.P234P 0.20 TCGA-BR-8487-01 2 233394699 233394699 C A CHRND Missense_Mutation p.P224T 0.08 tolerated(0.26) possibly_damaging(0.45) TCGA-BR-8487-01 2 234343475 234343475 G A DGKD Missense_Mutation p.A172T 0.27 tolerated(0.05) possibly_damaging(0.595) TCGA-BR-8487-01 2 234581202 234581202 C T UGT1A9 Missense_Mutation p.R208W 0.22 tolerated(0.09) benign(0) TCGA-BR-8487-01 2 235950198 235950198 C T SH3BP4 Missense_Mutation p.S262L 0.16 tolerated(0.16) benign(0.064) TCGA-BR-8487-01 2 235962450 235962450 T C SH3BP4 Missense_Mutation p.F961S 0.45 tolerated_low_confidence(0.17) benign(0.083) TCGA-BR-8487-01 2 236877211 236877211 G A AGAP1 Missense_Mutation p.R530Q 0.37 deleterious(0.01) benign(0.252) TCGA-BR-8487-01 2 237032729 237032729 G A AGAP1 Missense_Mutation p.R846Q 0.37 tolerated(0.25) benign(0.178) TCGA-BR-8487-01 2 237074930 237074930 C A GBX2 Missense_Mutation p.G225V 0.37 deleterious(0.04) benign(0.186) TCGA-BR-8487-01 2 237489698 237489698 G A ACKR3 Missense_Mutation p.R197Q 0.46 tolerated(0.24) possibly_damaging(0.875) TCGA-BR-8487-01 2 239007059 239007059 T A SCLY 3'UTR 0.29 TCGA-BR-8487-01 2 239040005 239040005 G A ESPNL Missense_Mutation p.E884K 0.56 deleterious(0) probably_damaging(0.999) TCGA-BR-8487-01 2 239234538 239234538 G A TRAF3IP1 Missense_Mutation p.R94Q 0.28 deleterious(0) benign(0.408) TCGA-BR-8487-01 2 240002823 240002823 G - HDAC4 Frame_Shift_Del p.M902Wfs*55 0.26 TCGA-BR-8487-01 2 240016524 240016524 C A HDAC4 Intron 0.40 TCGA-BR-8487-01 2 240969551 240969551 G A OR6B2 Missense_Mutation p.T99M 0.17 deleterious(0.02) benign(0.044) TCGA-BR-8487-01 2 241463539 241463539 C T ANKMY1 Missense_Mutation p.G443D 0.09 tolerated(0.59) benign(0.002) TCGA-BR-8487-01 2 242066644 242066644 A G PASK Silent p.A562A 0.37 TCGA-BR-8487-01 2 242105824 242105824 G T PPP1R7 Missense_Mutation p.G263C 0.51 deleterious(0) probably_damaging(0.998) TCGA-BR-8487-01 2 242545825 242545825 T C THAP4 Missense_Mutation p.D435G 0.36 deleterious(0.01) possibly_damaging(0.708) TCGA-BR-8487-01 2 24307235 24307235 A G TP53I3 5'UTR 0.62 TCGA-BR-8487-01 2 24494710 24494710 T - ITSN2 Frame_Shift_Del p.I728Ffs*19 0.24 TCGA-BR-8487-01 2 25384367 25384367 C T POMC Silent p.K129K 0.43 TCGA-BR-8487-01 2 25965028 25965028 A G ASXL2 Missense_Mutation p.I1393T 0.29 tolerated(0.07) benign(0.14) TCGA-BR-8487-01 2 26435415 26435415 A G HADHA Intron 0.31 TCGA-BR-8487-01 2 26654771 26654771 G A DRC1 Missense_Mutation p.R262H 0.38 deleterious(0.05) possibly_damaging(0.462) TCGA-BR-8487-01 2 26999331 26999331 G A SLC35F6 Silent p.L209L 0.41 TCGA-BR-8487-01 2 27121383 27121383 G A DPYSL5 Missense_Mutation p.A6T 0.39 tolerated(0.07) benign(0.027) TCGA-BR-8487-01 2 27169837 27169837 G A DPYSL5 Missense_Mutation p.G557R 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8487-01 2 27428246 27428246 A G SLC5A6 Missense_Mutation p.S236P 0.40 tolerated(0.28) benign(0.356) TCGA-BR-8487-01 2 27676932 27676932 C - IFT172 Frame_Shift_Del p.A1210Pfs*107 0.27 TCGA-BR-8487-01 2 27844169 27844169 C T ZNF512 Silent p.P515P 0.40 TCGA-BR-8487-01 2 29294038 29294038 G - C2orf71 Frame_Shift_Del p.S1031Afs*4 0.34 TCGA-BR-8487-01 2 31167736 31167736 G A GALNT14 Missense_Mutation p.T277M 0.43 deleterious(0) possibly_damaging(0.832) TCGA-BR-8487-01 2 32379637 32379637 C T SPAST 3'UTR 0.24 TCGA-BR-8487-01 2 32859010 32859010 C - TTC27 Frame_Shift_Del p.P113Lfs*29 0.14 TCGA-BR-8487-01 2 32865440 32865440 T C TTC27 Missense_Mutation p.I167T 0.50 deleterious(0) benign(0.273) TCGA-BR-8487-01 2 32889536 32889536 T C TTC27 Splice_Site p.X269_splice 0.42 TCGA-BR-8487-01 2 3691463 3691463 G A COLEC11 Missense_Mutation p.A205T 0.51 tolerated(0.36) benign(0.016) TCGA-BR-8487-01 2 37035867 37035867 C T VIT Missense_Mutation p.R548C 0.48 deleterious(0) probably_damaging(0.998) TCGA-BR-8487-01 2 37267563 37267563 C T HEATR5B Silent p.L985L 0.37 TCGA-BR-8487-01 2 37376193 37376193 A - EIF2AK2 Intron 0.31 TCGA-BR-8487-01 2 37429054 37429056 AGA - CEBPZ Intron 0.27 TCGA-BR-8487-01 2 39440547 39440547 T C CDKL4 Missense_Mutation p.I119M 0.08 deleterious(0.01) benign(0.022) TCGA-BR-8487-01 2 42991088 42991089 - C OXER1 Frame_Shift_Ins p.S78Vfs*61 0.37 TCGA-BR-8487-01 2 43452855 43452855 T C ZFP36L2 Missense_Mutation p.M30V 0.50 tolerated(0.2) benign(0.22) TCGA-BR-8487-01 2 45170049 45170049 G T SIX3 Missense_Mutation p.R269M 0.49 deleterious(0) probably_damaging(0.971) TCGA-BR-8487-01 2 46228616 46228616 C T PRKCE Silent p.I299I 0.09 TCGA-BR-8487-01 2 47641558 47641558 G T MSH2 Splice_Site p.X314_splice 1.00 TCGA-BR-8487-01 2 48915172 48915172 A - LHCGR Frame_Shift_Del p.F588Lfs*14 0.26 TCGA-BR-8487-01 2 50779787 50779787 A G NRXN1 Missense_Mutation p.L606P 0.18 deleterious(0.03) benign(0.221) TCGA-BR-8487-01 2 53999066 53999066 T G CHAC2 Missense_Mutation p.V53G 0.45 deleterious(0) possibly_damaging(0.723) TCGA-BR-8487-01 2 53999076 53999076 T A CHAC2 Silent p.P56P 0.43 TCGA-BR-8487-01 2 54041678 54041678 A G ERLEC1 Splice_Site p.X409_splice 0.16 TCGA-BR-8487-01 2 54853120 54853120 G A SPTBN1 Missense_Mutation p.E465K 0.35 deleterious(0) probably_damaging(0.999) TCGA-BR-8487-01 2 54858335 54858335 C A SPTBN1 Missense_Mutation p.L1051M 0.35 tolerated(0.19) benign(0.062) TCGA-BR-8487-01 2 54870189 54870189 C T SPTBN1 Missense_Mutation p.H1310Y 0.40 deleterious(0) possibly_damaging(0.889) TCGA-BR-8487-01 2 55476655 55476655 G A MTIF2 Missense_Mutation p.A286V 0.28 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 2 55561621 55561622 - T CCDC88A Frame_Shift_Ins p.I779Nfs*7 0.33 TCGA-BR-8487-01 2 55746926 55746927 - T CCDC104 5'UTR 0.12 TCGA-BR-8487-01 2 55795445 55795445 C T SMEK2 Missense_Mutation p.R607H 0.34 tolerated(0.18) benign(0.077) TCGA-BR-8487-01 2 60689070 60689070 G A BCL11A Missense_Mutation p.T326M 0.42 deleterious(0) possibly_damaging(0.904) TCGA-BR-8487-01 2 60983541 60983541 G - PAPOLG 5'UTR 0.28 TCGA-BR-8487-01 2 60995614 60995614 C T PAPOLG Missense_Mutation p.P86S 0.33 tolerated(0.09) benign(0.038) TCGA-BR-8487-01 2 61522168 61522168 C A USP34 Splice_Site p.X1460_splice 0.42 TCGA-BR-8487-01 2 63092086 63092086 T C EHBP1 Silent p.T361T 0.50 TCGA-BR-8487-01 2 68385008 68385008 C A PNO1 5'UTR 0.50 TCGA-BR-8487-01 2 69581630 69581630 A G GFPT1 Missense_Mutation p.Y226H 0.14 deleterious(0.02) possibly_damaging(0.687) TCGA-BR-8487-01 2 70131463 70131463 T - SNRNP27 3'UTR 0.36 TCGA-BR-8487-01 2 70143292 70143292 A G MXD1 Missense_Mutation p.N38S 0.38 tolerated(1) benign(0.001) TCGA-BR-8487-01 2 71221892 71221892 C - TEX261 5'UTR 0.40 TCGA-BR-8487-01 2 72371142 72371142 G A CYP26B1 Silent p.G135G 0.36 TCGA-BR-8487-01 2 73491645 73491645 G A FBXO41 Missense_Mutation p.R523C 0.29 deleterious(0) benign(0.005) TCGA-BR-8487-01 2 74042616 74042616 C T C2orf78 Silent p.S422S 0.30 TCGA-BR-8487-01 2 74593377 74593377 G - DCTN1 Frame_Shift_Del p.S919Afs*25 0.26 TCGA-BR-8487-01 2 74682585 74682586 - A INO80B Frame_Shift_Ins p.H40Tfs*67 0.16 TCGA-BR-8487-01 2 75897274 75897274 T - GCFC2 Frame_Shift_Del p.K698Sfs*5 0.19 TCGA-BR-8487-01 2 85578126 85578126 C T RETSAT Missense_Mutation p.R125H 0.35 tolerated(0.05) benign(0.015) TCGA-BR-8487-01 2 85786171 85786172 - G GGCX Frame_Shift_Ins p.Q81Pfs*14 0.21 TCGA-BR-8487-01 2 85820293 85820293 T C VAMP5 3'UTR 0.61 TCGA-BR-8487-01 2 85838877 85838877 G A C2orf68 Missense_Mutation p.A47V 0.40 deleterious(0.02) probably_damaging(0.999) TCGA-BR-8487-01 2 86371633 86371633 C A IMMT Nonsense_Mutation p.E679* 0.23 TCGA-BR-8487-01 2 86716503 86716503 G A KDM3A Missense_Mutation p.A1126T 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-BR-8487-01 2 88422509 88422509 T A FABP1 3'Flank 0.36 TCGA-BR-8487-01 2 8919228 8919228 A - KIDINS220 Frame_Shift_Del p.F804Lfs*9 0.24 TCGA-BR-8487-01 2 8943209 8943209 A G KIDINS220 Missense_Mutation p.S218P 0.40 deleterious(0.01) possibly_damaging(0.811) TCGA-BR-8487-01 2 9437478 9437478 C T ASAP2 Silent p.G83G 0.29 TCGA-BR-8487-01 2 95541445 95541445 A G TEKT4 Missense_Mutation p.H350R 0.44 tolerated(0.5) benign(0.014) TCGA-BR-8487-01 2 95950790 95950790 C T PROM2 Missense_Mutation p.A601V 0.45 tolerated(0.14) benign(0.284) TCGA-BR-8487-01 2 96072864 96072864 G A FAHD2A Missense_Mutation p.V141M 0.08 tolerated(0.1) benign(0.104) TCGA-BR-8487-01 2 96795819 96795819 C T ASTL Missense_Mutation p.V235M 0.39 deleterious(0) probably_damaging(0.997) TCGA-BR-8487-01 2 96809592 96809592 C T DUSP2 Silent p.L305L 0.37 TCGA-BR-8487-01 2 96906238 96906238 G T STARD7-AS1 RNA 0.48 TCGA-BR-8487-01 2 96906418 96906418 C A STARD7-AS1 RNA 0.33 TCGA-BR-8487-01 2 97165144 97165144 A G NEURL3 RNA 0.46 TCGA-BR-8487-01 2 97274639 97274639 G A KANSL3 Missense_Mutation p.P516S 0.33 deleterious(0) probably_damaging(0.994) TCGA-BR-8487-01 2 97527106 97527106 G A SEMA4C Missense_Mutation p.R587C 0.08 tolerated(0.19) possibly_damaging(0.72) TCGA-BR-8487-01 2 97529759 97529759 G - SEMA4C Frame_Shift_Del p.L412Cfs*3 0.29 TCGA-BR-8487-01 2 98275411 98275411 G A ACTR1B Missense_Mutation p.A124V 0.11 tolerated(0.06) possibly_damaging(0.48) TCGA-BR-8487-01 2 98430732 98430732 A G TMEM131 Missense_Mutation p.V471A 0.42 tolerated(0.07) possibly_damaging(0.534) TCGA-BR-8487-01 2 99241956 99241956 A - MGAT4A 3'UTR 0.65 TCGA-BR-8487-01 2 99413865 99413865 C T KIAA1211L Missense_Mutation p.R851Q 0.34 tolerated(0.44) benign(0.198) TCGA-BR-8487-01 3 100354601 100354601 T C GPR128 Silent p.A176A 0.30 TCGA-BR-8487-01 3 100471644 100471644 G A ABI3BP Silent p.S992S 0.35 TCGA-BR-8487-01 3 101085430 101085430 C T SENP7 Missense_Mutation p.G388S 0.37 tolerated(0.68) benign(0) TCGA-BR-8487-01 3 101474321 101474321 G A CEP97 Missense_Mutation p.R259Q 0.46 deleterious(0.03) benign(0.094) TCGA-BR-8487-01 3 10188237 10188237 G T VHL Missense_Mutation p.G127V 0.31 tolerated(0.05) probably_damaging(0.968) TCGA-BR-8487-01 3 10370624 10370624 C T ATP2B2 Silent p.P1202P 0.43 TCGA-BR-8487-01 3 10430087 10430087 C A ATP2B2 Splice_Site p.X261_splice 0.41 TCGA-BR-8487-01 3 105266081 105266081 A G ALCAM Missense_Mutation p.E398G 0.29 deleterious(0.03) benign(0.102) TCGA-BR-8487-01 3 108229398 108229398 A - MYH15 Frame_Shift_Del p.W14Gfs*5 0.22 TCGA-BR-8487-01 3 108363512 108363512 A G DZIP3 Missense_Mutation p.D548G 0.38 deleterious_low_confidence(0) benign(0.379) TCGA-BR-8487-01 3 108474545 108474545 G A RETNLB 3'UTR 0.25 TCGA-BR-8487-01 3 108541693 108541693 C A TRAT1 5'UTR 0.38 TCGA-BR-8487-01 3 110830886 110830886 C T PVRL3 Missense_Mutation p.A57V 0.23 tolerated(0.09) possibly_damaging(0.824) TCGA-BR-8487-01 3 112337840 112337840 A G CCDC80 Missense_Mutation p.L716P 0.16 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 3 113003402 113003402 C T BOC Silent p.G958G 0.36 TCGA-BR-8487-01 3 113327011 113327011 C T SIDT1 Missense_Mutation p.R517C 0.43 deleterious(0.02) benign(0.23) TCGA-BR-8487-01 3 113376978 113376979 CT - KIAA2018 Frame_Shift_Del p.S1184Wfs*11 0.24 TCGA-BR-8487-01 3 114058003 114058003 G - ZBTB20 Frame_Shift_Del p.P692Lfs*43 0.34 TCGA-BR-8487-01 3 118948986 118948986 C G B4GALT4 5'UTR 0.29 TCGA-BR-8487-01 3 119165958 119165958 A G TMEM39A Missense_Mutation p.V161A 0.36 tolerated(0.62) benign(0.037) TCGA-BR-8487-01 3 119325724 119325724 G A PLA1A Silent p.S59S 0.32 TCGA-BR-8487-01 3 121132132 121132132 C T STXBP5L Missense_Mutation p.R1050W 0.37 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 3 121151775 121151777 TCT - POLQ In_Frame_Del p.E2549del 0.33 TCGA-BR-8487-01 3 121345756 121345756 A - FBXO40 Frame_Shift_Del 0.11 TCGA-BR-8487-01 3 121500637 121500637 G A IQCB1 Nonsense_Mutation p.R455* 0.47 TCGA-BR-8487-01 3 122133322 122133322 G A WDR5B 3'UTR 0.53 TCGA-BR-8487-01 3 122432364 122432366 AAG - PARP14 In_Frame_Del p.E1240del 0.19 TCGA-BR-8487-01 3 122545749 122545749 C A DIRC2 Silent p.A180A 0.42 TCGA-BR-8487-01 3 123332966 123332966 C A MYLK Nonsense_Mutation p.E1911* 0.43 TCGA-BR-8487-01 3 123385183 123385184 - G MYLK Frame_Shift_Ins p.Q1239Sfs*7 0.17 TCGA-BR-8487-01 3 123401075 123401075 A G MYLK Silent p.T1216T 0.37 TCGA-BR-8487-01 3 124515331 124515331 A T ITGB5 Missense_Mutation p.C533S 0.26 deleterious(0) probably_damaging(0.938) TCGA-BR-8487-01 3 125648415 125648415 A - ALG1L Intron 0.22 TCGA-BR-8487-01 3 126160621 126160621 A G ZXDC Missense_Mutation p.V794A 0.44 deleterious(0.04) benign(0.011) TCGA-BR-8487-01 3 128979574 128979574 C T COPG1 Missense_Mutation p.T351M 0.36 deleterious(0) probably_damaging(0.989) TCGA-BR-8487-01 3 129247930 129247930 C A RHO Silent p.T118T 0.32 TCGA-BR-8487-01 3 129370588 129370588 C T TMCC1 Silent p.Q566Q 0.39 TCGA-BR-8487-01 3 12949922 12949922 G A IQSEC1 Silent p.D908D 0.38 TCGA-BR-8487-01 3 130284123 130284123 G T COL6A6 Missense_Mutation p.R316M 0.37 deleterious(0) possibly_damaging(0.843) TCGA-BR-8487-01 3 130285766 130285766 G A COL6A6 Silent p.K501K 0.36 TCGA-BR-8487-01 3 130307993 130307993 C T COL6A6 Silent p.G1395G 0.37 TCGA-BR-8487-01 3 130340717 130340717 A G COL6A6 Missense_Mutation p.Q1623R 0.47 tolerated(0.59) benign(0.038) TCGA-BR-8487-01 3 130649267 130649267 G A ATP2C1 Missense_Mutation p.R39H 0.43 tolerated(0.16) benign(0.002) TCGA-BR-8487-01 3 131068501 131068501 T C NEK11 Missense_Mutation p.C607R 0.32 tolerated(0.41) benign(0.001) TCGA-BR-8487-01 3 132360908 132360908 T C ACAD11 Missense_Mutation p.T149A 0.39 tolerated(0.2) benign(0.001) TCGA-BR-8487-01 3 133494292 133494292 C T TF Missense_Mutation p.P568L 0.46 tolerated(0.26) benign(0.039) TCGA-BR-8487-01 3 133547420 133547421 - A RAB6B 3'UTR 0.56 TCGA-BR-8487-01 3 13384782 13384782 A G NUP210 Missense_Mutation p.S953P 0.35 tolerated(0.27) benign(0.24) TCGA-BR-8487-01 3 134201677 134201677 G A ANAPC13 Silent p.L24L 0.42 TCGA-BR-8487-01 3 134256004 134256004 G A CEP63 Missense_Mutation p.R150H 0.39 tolerated(0.07) probably_damaging(0.997) TCGA-BR-8487-01 3 1363376 1363376 G A CNTN6 Silent p.P268P 0.35 TCGA-BR-8487-01 3 1371501 1371501 A - CNTN6 Frame_Shift_Del p.K418Sfs*63 0.36 TCGA-BR-8487-01 3 139088326 139088326 T - COPB2 Frame_Shift_Del p.K422Nfs*23 0.36 TCGA-BR-8487-01 3 139092574 139092574 G A COPB2 Silent p.C276C 0.27 TCGA-BR-8487-01 3 141163125 141163125 C A ZBTB38 Missense_Mutation p.P632Q 0.35 tolerated(0.09) possibly_damaging(0.759) TCGA-BR-8487-01 3 141497563 141497563 C T GRK7 Missense_Mutation p.A146V 0.12 tolerated(0.62) benign(0.004) TCGA-BR-8487-01 3 142268341 142268341 G A ATR Missense_Mutation p.R1051C 0.33 tolerated(0.08) benign(0.049) TCGA-BR-8487-01 3 143691373 143691373 T C C3orf58 Missense_Mutation p.F67L 0.41 tolerated(0.46) benign(0.292) TCGA-BR-8487-01 3 14549157 14549157 G A GRIP2 RNA 0.22 TCGA-BR-8487-01 3 146251312 146251312 C T PLSCR1 Silent p.P13P 0.36 TCGA-BR-8487-01 3 148871324 148871324 A G HPS3 Missense_Mutation p.Q430R 0.35 tolerated(0.1) possibly_damaging(0.888) TCGA-BR-8487-01 3 149051121 149051121 G A TM4SF18 Missense_Mutation p.L17F 0.09 tolerated(0.06) probably_damaging(0.996) TCGA-BR-8487-01 3 14964573 14964573 G A FGD5 Silent p.S1276S 0.34 TCGA-BR-8487-01 3 150289746 150289746 A - EIF2A Frame_Shift_Del p.N273Mfs*7 0.25 TCGA-BR-8487-01 3 150419909 150419909 T C FAM194A Missense_Mutation p.R154G 0.45 deleterious(0.03) benign(0.055) TCGA-BR-8487-01 3 151100481 151100481 A G MED12L Missense_Mutation p.D1508G 0.45 deleterious(0) probably_damaging(0.998) TCGA-BR-8487-01 3 15119666 15119666 G T ZFYVE20 Missense_Mutation p.A305D 0.21 deleterious(0.01) probably_damaging(0.986) TCGA-BR-8487-01 3 152173354 152173354 G A MBNL1 Intron 0.31 TCGA-BR-8487-01 3 15274039 15274039 A G CAPN7 Missense_Mutation p.D349G 0.52 deleterious(0.01) probably_damaging(0.956) TCGA-BR-8487-01 3 154033826 154033826 A G DHX36 Splice_Site p.X123_splice 0.50 TCGA-BR-8487-01 3 155222384 155222384 G A PLCH1 Missense_Mutation p.S543L 0.40 deleterious(0.05) benign(0.24) TCGA-BR-8487-01 3 157081298 157081298 C A VEPH1 Missense_Mutation p.Q530H 0.37 tolerated(0.2) benign(0.001) TCGA-BR-8487-01 3 157823865 157823865 T - SHOX2 5'UTR 0.30 TCGA-BR-8487-01 3 160141302 160141302 A G SMC4 Silent p.K703K 0.47 TCGA-BR-8487-01 3 160395474 160395474 A - ARL14 Frame_Shift_Del p.N115Mfs*7 0.12 TCGA-BR-8487-01 3 160679656 160679656 C T PPM1L Nonsense_Mutation p.R178* 0.16 TCGA-BR-8487-01 3 160783285 160783285 C T PPM1L Silent p.N223N 0.25 TCGA-BR-8487-01 3 16217062 16217062 G T GALNT15 Missense_Mutation p.W135L 0.47 tolerated(0.23) possibly_damaging(0.663) TCGA-BR-8487-01 3 16343348 16343348 A - OXNAD1 Frame_Shift_Del p.N218Ifs*14 0.22 TCGA-BR-8487-01 3 164714430 164714430 C T SI Missense_Mutation p.D1529N 0.29 deleterious(0.01) probably_damaging(1) TCGA-BR-8487-01 3 16646861 16646861 A G DAZL 5'Flank 0.30 TCGA-BR-8487-01 3 166958587 166958587 A G ZBBX Silent p.S838S 0.42 TCGA-BR-8487-01 3 167750483 167750483 T C GOLIM4 Missense_Mutation p.Q334R 0.28 tolerated(0.15) benign(0.018) TCGA-BR-8487-01 3 169847182 169847182 G T PHC3 Missense_Mutation p.P360T 0.37 tolerated(0.06) benign(0.003) TCGA-BR-8487-01 3 170586135 170586135 C T RPL22L1 Silent p.L18L 0.37 TCGA-BR-8487-01 3 170723843 170723843 G A SLC2A2 Missense_Mutation p.L222F 0.36 deleterious(0.04) possibly_damaging(0.558) TCGA-BR-8487-01 3 178742799 178742799 T C ZMAT3 3'UTR 0.39 TCGA-BR-8487-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.37 tolerated(0.11) possibly_damaging(0.529) TCGA-BR-8487-01 3 179537679 179537679 T G PEX5L Missense_Mutation p.Q303P 0.48 tolerated(0.26) benign(0.002) TCGA-BR-8487-01 3 182987617 182987617 A - B3GNT5 Frame_Shift_Del p.K12Nfs*4 0.12 TCGA-BR-8487-01 3 183822631 183822631 G A HTR3E Missense_Mutation p.R175H 0.36 tolerated(0.79) benign(0.006) TCGA-BR-8487-01 3 183882166 183882166 C A DVL3 Missense_Mutation p.P115T 0.49 deleterious(0.03) benign(0.026) TCGA-BR-8487-01 3 183976192 183976192 C A ECE2 Intron 0.24 TCGA-BR-8487-01 3 184009865 184009865 C T ECE2 Missense_Mutation p.R831C 0.27 tolerated(0.13) probably_damaging(0.979) TCGA-BR-8487-01 3 184033148 184033148 A T EIF4G1 5'Flank 0.25 TCGA-BR-8487-01 3 184100472 184100472 G - CHRD Frame_Shift_Del p.G299Afs*31 0.19 TCGA-BR-8487-01 3 185434436 185434436 C T C3orf65 Missense_Mutation p.A90V 0.33 deleterious_low_confidence(0) possibly_damaging(0.682) TCGA-BR-8487-01 3 185975717 185975717 A - DGKG Frame_Shift_Del p.F479Sfs*62 0.25 TCGA-BR-8487-01 3 188925188 188925188 G T TPRG1 Silent p.G5G 0.32 TCGA-BR-8487-01 3 190039836 190039836 A G CLDN1 Missense_Mutation p.C54R 0.33 deleterious(0) probably_damaging(0.972) TCGA-BR-8487-01 3 190120187 190120187 G A CLDN16 Missense_Mutation p.R129H 0.38 tolerated(0.21) probably_damaging(0.973) TCGA-BR-8487-01 3 194362829 194362829 T - LSG1 Frame_Shift_Del p.S649Vfs*41 0.26 TCGA-BR-8487-01 3 194790780 194790780 G - XXYLT1 Frame_Shift_Del p.E283Rfs*10 0.30 TCGA-BR-8487-01 3 195484043 195484043 C T MUC4 Missense_Mutation p.S5048N 0.27 benign(0.182) TCGA-BR-8487-01 3 195515973 195515973 C A MUC4 Missense_Mutation p.E826D 0.15 unknown(0) TCGA-BR-8487-01 3 196288312 196288312 G T WDR53 Missense_Mutation p.P12H 0.31 deleterious(0.01) benign(0.332) TCGA-BR-8487-01 3 196664431 196664431 C T NCBP2 Missense_Mutation p.A117T 0.39 tolerated(0.41) benign(0.048) TCGA-BR-8487-01 3 21606141 21606141 T C ZNF385D Silent p.T67T 0.38 TCGA-BR-8487-01 3 24193953 24193953 G A THRB Silent p.D104D 0.15 TCGA-BR-8487-01 3 30648432 30648432 T C TGFBR2 Silent p.R19R 0.73 TCGA-BR-8487-01 3 30729962 30729962 C T TGFBR2 Nonsense_Mutation p.R520* 0.39 TCGA-BR-8487-01 3 31725151 31725151 G A OSBPL10 Silent p.S567S 0.42 TCGA-BR-8487-01 3 32030702 32030702 C T ZNF860 Missense_Mutation p.T44M 0.08 deleterious(0.01) probably_damaging(0.916) TCGA-BR-8487-01 3 32398895 32398895 G A CMTM8 Missense_Mutation p.A60T 0.43 deleterious(0) probably_damaging(0.986) TCGA-BR-8487-01 3 32544163 32544163 G A CMTM6 Silent p.L25L 0.53 TCGA-BR-8487-01 3 32612324 32612324 C T DYNC1LI1 5'UTR 0.20 TCGA-BR-8487-01 3 33135617 33135617 A G TMPPE Missense_Mutation p.M24T 0.32 deleterious_low_confidence(0.01) benign(0.149) TCGA-BR-8487-01 3 33467186 33467186 G T UBP1 Missense_Mutation p.P54Q 0.34 deleterious(0.02) possibly_damaging(0.882) TCGA-BR-8487-01 3 35778784 35778784 A G ARPP21 Missense_Mutation p.Q491R 0.43 tolerated(0.18) benign(0.185) TCGA-BR-8487-01 3 36756838 36756838 A G DCLK3 Missense_Mutation p.V643A 0.31 tolerated(0.99) benign(0) TCGA-BR-8487-01 3 36897282 36897282 G A TRANK1 Missense_Mutation p.R1267C 0.43 tolerated(0.19) benign(0.005) TCGA-BR-8487-01 3 37574880 37574880 C T ITGA9 Silent p.H483H 0.36 TCGA-BR-8487-01 3 38039623 38039623 G A VILL Silent p.A269A 0.50 TCGA-BR-8487-01 3 38180225 38180226 - C MYD88 Frame_Shift_Ins p.V27Gfs*44 0.28 TCGA-BR-8487-01 3 38181445 38181445 G A MYD88 Missense_Mutation p.R153Q 0.12 tolerated(0.21) benign(0.007) TCGA-BR-8487-01 3 38416746 38416746 C A XYLB Missense_Mutation p.L334M 0.32 deleterious(0) probably_damaging(0.969) TCGA-BR-8487-01 3 38592944 38592944 G C SCN5A Missense_Mutation p.A1640G 0.07 deleterious(0.01) probably_damaging(0.998) TCGA-BR-8487-01 3 38655264 38655264 G A SCN5A Intron 0.31 TCGA-BR-8487-01 3 38949441 38949441 T - SCN11A Frame_Shift_Del p.K491Sfs*5 0.31 TCGA-BR-8487-01 3 39178807 39178807 C T TTC21A Missense_Mutation p.R1134W 0.35 deleterious(0) benign(0.339) TCGA-BR-8487-01 3 39225733 39225733 G T XIRP1 Missense_Mutation p.P1735H 0.09 deleterious(0.02) benign(0.011) TCGA-BR-8487-01 3 41265733 41265733 G A CTNNB1 Intron 0.33 TCGA-BR-8487-01 3 41267268 41267268 C T CTNNB1 Silent p.A284A 0.48 TCGA-BR-8487-01 3 42166997 42166997 C T TRAK1 Silent p.D59D 0.34 TCGA-BR-8487-01 3 42572370 42572370 G A VIPR1 Missense_Mutation p.V246I 0.51 tolerated(0.5) benign(0.05) TCGA-BR-8487-01 3 42662950 42662950 G A NKTR Missense_Mutation p.A106T 0.12 deleterious_low_confidence(0.05) unknown(0) TCGA-BR-8487-01 3 42679755 42679755 C T NKTR Silent p.C853C 0.42 TCGA-BR-8487-01 3 42679764 42679764 A - NKTR Frame_Shift_Del p.R859Efs*3 0.32 TCGA-BR-8487-01 3 44763241 44763241 C T ZNF502 Missense_Mutation p.T311M 0.32 tolerated(0.11) benign(0.066) TCGA-BR-8487-01 3 44803239 44803239 C T KIF15 5'UTR 0.44 TCGA-BR-8487-01 3 45636943 45636943 G A LIMD1 Missense_Mutation p.G191D 0.40 tolerated(0.05) benign(0.023) TCGA-BR-8487-01 3 46414455 46414455 A - CCR5 Frame_Shift_Del p.I23Sfs*3 0.29 TCGA-BR-8487-01 3 46450555 46450555 T C CCRL2 Missense_Mutation p.S341P 0.40 tolerated(0.4) benign(0.003) TCGA-BR-8487-01 3 46722884 46722884 C T ALS2CL Missense_Mutation p.E430K 0.38 tolerated(0.11) benign(0.022) TCGA-BR-8487-01 3 46963601 46963601 G A CCDC12 Silent p.S162S 0.39 TCGA-BR-8487-01 3 47045630 47045630 A G NBEAL2 Missense_Mutation p.N1982S 0.33 deleterious(0) probably_damaging(0.997) TCGA-BR-8487-01 3 47451306 47451306 G A PTPN23 Missense_Mutation p.R704H 0.25 unknown(0) TCGA-BR-8487-01 3 47619066 47619066 G A CSPG5 Silent p.S150S 0.11 TCGA-BR-8487-01 3 47888052 47888052 T C DHX30 Missense_Mutation p.V497A 0.46 deleterious(0.01) possibly_damaging(0.712) TCGA-BR-8487-01 3 47894488 47894488 G - MAP4 3'UTR 0.30 TCGA-BR-8487-01 3 48455211 48455211 A G PLXNB1 Missense_Mutation p.L1468S 0.09 deleterious(0) probably_damaging(0.999) TCGA-BR-8487-01 3 48461117 48461117 C T PLXNB1 Missense_Mutation p.A860T 0.43 tolerated(1) benign(0.001) TCGA-BR-8487-01 3 48461322 48461322 C T PLXNB1 Silent p.P791P 0.18 TCGA-BR-8487-01 3 48507756 48507756 G T TREX1 5'UTR 0.35 TCGA-BR-8487-01 3 48510575 48510575 G A SHISA5 Silent p.A218A 0.53 TCGA-BR-8487-01 3 48520624 48520624 C T SHISA5 Silent p.A92A 0.33 TCGA-BR-8487-01 3 48573768 48573768 A G PFKFB4 Missense_Mutation p.L254P 0.45 probably_damaging(1) TCGA-BR-8487-01 3 48612871 48612871 G - COL7A1 Frame_Shift_Del p.P2029Lfs*177 0.14 TCGA-BR-8487-01 3 48666129 48666129 C - SLC26A6 Frame_Shift_Del p.V540* 0.27 TCGA-BR-8487-01 3 48685826 48685826 C T CELSR3 Silent p.Q2282Q 0.42 TCGA-BR-8487-01 3 48690532 48690532 C T CELSR3 Missense_Mutation p.G1846D 0.12 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 3 49011181 49011181 C T ARIH2 Missense_Mutation p.R274W 0.32 deleterious(0) possibly_damaging(0.828) TCGA-BR-8487-01 3 49148936 49148936 C T USP19 Missense_Mutation p.E1070K 0.52 deleterious(0.02) possibly_damaging(0.635) TCGA-BR-8487-01 3 49162247 49162247 G A LAMB2 Missense_Mutation p.A999V 0.39 deleterious(0) probably_damaging(0.981) TCGA-BR-8487-01 3 49339872 49339872 C T USP4 Missense_Mutation p.R411Q 0.16 deleterious(0) probably_damaging(0.95) TCGA-BR-8487-01 3 49373016 49373016 T C USP4 Missense_Mutation p.S39G 0.24 tolerated(0.12) benign(0.094) TCGA-BR-8487-01 3 49699106 49699106 C T BSN Silent p.D3276D 0.34 TCGA-BR-8487-01 3 49722070 49722070 G A MST1 Missense_Mutation p.R597C 0.39 deleterious(0.03) probably_damaging(0.909) TCGA-BR-8487-01 3 49722283 49722283 C T MST1 Missense_Mutation p.G553S 0.29 deleterious(0.02) probably_damaging(1) TCGA-BR-8487-01 3 49725025 49725025 G A MST1 Missense_Mutation p.R107W 0.35 deleterious(0.04) benign(0.002) TCGA-BR-8487-01 3 49764800 49764800 G T IP6K1 Missense_Mutation p.L361M 0.39 tolerated(0.13) benign(0.01) TCGA-BR-8487-01 3 49898998 49898998 C T CAMKV Silent p.R105R 0.43 TCGA-BR-8487-01 3 50251692 50251692 G - SLC38A3 RNA 0.10 TCGA-BR-8487-01 3 50385556 50385556 G A NPRL2 Missense_Mutation p.R311W 0.37 deleterious(0) probably_damaging(0.999) TCGA-BR-8487-01 3 51392444 51392444 C T DOCK3 Silent p.C1413C 0.13 TCGA-BR-8487-01 3 51417604 51417605 CC - DOCK3 Frame_Shift_Del p.P1852Sfs*46 0.29 TCGA-BR-8487-01 3 51978417 51978417 C T PARP3 Silent p.G115G 0.13 TCGA-BR-8487-01 3 52027720 52027720 T C RPL29 3'UTR 0.40 TCGA-BR-8487-01 3 52242221 52242221 G A ALAS1 Missense_Mutation p.D430N 0.10 deleterious(0) probably_damaging(0.969) TCGA-BR-8487-01 3 52387194 52387194 C T DNAH1 Missense_Mutation p.R1035C 0.39 possibly_damaging(0.892) TCGA-BR-8487-01 3 52428993 52428993 G A DNAH1 Missense_Mutation p.R3629H 0.44 probably_damaging(0.996) TCGA-BR-8487-01 3 52794938 52794938 T - NEK4 Frame_Shift_Del p.N279Ifs*27 0.35 TCGA-BR-8487-01 3 52821010 52821010 C T ITIH1 Nonsense_Mutation p.Q595* 0.43 TCGA-BR-8487-01 3 52941168 52941168 G T SFMBT1 Missense_Mutation p.L750M 0.28 tolerated(0.25) benign(0.244) TCGA-BR-8487-01 3 53275202 53275202 C T TKT Silent p.A95A 0.12 TCGA-BR-8487-01 3 53766961 53766961 G A CACNA1D Missense_Mutation p.A885T 0.50 deleterious(0) possibly_damaging(0.854) TCGA-BR-8487-01 3 53845159 53845159 T C CACNA1D Missense_Mutation p.L2091S 0.35 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-BR-8487-01 3 54928704 54928704 G T CACNA2D3 Intron 0.43 TCGA-BR-8487-01 3 55504262 55504262 C T WNT5A Missense_Mutation p.G334D 0.23 deleterious(0) probably_damaging(0.951) TCGA-BR-8487-01 3 55922525 55922525 G A ERC2 Missense_Mutation p.T819I 0.33 tolerated(0.13) benign(0.309) TCGA-BR-8487-01 3 56766423 56766423 C T ARHGEF3 Silent p.V389V 0.35 TCGA-BR-8487-01 3 58080594 58080594 G A FLNB Silent p.Q273Q 0.31 TCGA-BR-8487-01 3 62189140 62189140 G T PTPRG Missense_Mutation p.E557D 0.58 tolerated(0.08) benign(0.155) TCGA-BR-8487-01 3 62358365 62358365 C T FEZF2 Missense_Mutation p.G60D 0.41 tolerated(0.05) benign(0.02) TCGA-BR-8487-01 3 62535763 62535763 T C CADPS Missense_Mutation p.N594S 0.40 tolerated(0.06) benign(0.234) TCGA-BR-8487-01 3 63820861 63820861 A T THOC7 Missense_Mutation p.S172R 0.43 tolerated(0.18) possibly_damaging(0.453) TCGA-BR-8487-01 3 63981832 63981832 C - ATXN7 Frame_Shift_Del p.T781Pfs*11 0.31 TCGA-BR-8487-01 3 67054660 67054663 TGTT - KBTBD8 Frame_Shift_Del p.V424Afs*40 0.37 TCGA-BR-8487-01 3 75475656 75475656 G A FAM86DP RNA 0.75 TCGA-BR-8487-01 3 7620162 7620162 C T GRM7 Silent p.C523C 0.35 TCGA-BR-8487-01 3 8667234 8667235 - T SSUH2 Frame_Shift_Ins p.N289Kfs*44 0.18 TCGA-BR-8487-01 3 87295032 87295032 G A CHMP2B Missense_Mutation p.A99T 0.09 tolerated(0.11) benign(0.23) TCGA-BR-8487-01 3 88040889 88040889 T - HTR1F Frame_Shift_Del p.L332Wfs*11 0.33 TCGA-BR-8487-01 3 89468423 89468423 A G EPHA3 Missense_Mutation p.K653E 0.44 deleterious(0.01) probably_damaging(0.988) TCGA-BR-8487-01 3 89521697 89521697 C T EPHA3 Missense_Mutation p.T925I 0.33 deleterious(0) benign(0.006) TCGA-BR-8487-01 3 93783344 93783345 - A NSUN3 Frame_Shift_Ins p.Q28Tfs*30 0.18 TCGA-BR-8487-01 3 9490131 9490131 C T SETD5 Silent p.C721C 0.39 TCGA-BR-8487-01 3 97661053 97661053 A G MINA 3'UTR 0.42 TCGA-BR-8487-01 3 9786044 9786044 G T BRPF1 Missense_Mutation p.Q924H 0.36 tolerated(0.46) possibly_damaging(0.655) TCGA-BR-8487-01 3 98568318 98568318 A G DCBLD2 Silent p.V186V 0.33 TCGA-BR-8487-01 3 99514822 99514822 A - COL8A1 Frame_Shift_Del p.K694Rfs*66 0.15 TCGA-BR-8487-01 3 99881236 99881236 C T CMSS1 Silent p.S105S 0.42 TCGA-BR-8487-01 4 10022957 10022957 G A SLC2A9 Silent p.L33L 0.40 TCGA-BR-8487-01 4 100232725 100232725 G T ADH1B Missense_Mutation p.P306H 0.33 deleterious(0) probably_damaging(0.986) TCGA-BR-8487-01 4 100257923 100257923 C T ADH1C Missense_Mutation p.V372I 0.26 benign(0.006) TCGA-BR-8487-01 4 100266039 100266039 A T ADH1C Missense_Mutation p.S183T 0.30 benign(0.318) TCGA-BR-8487-01 4 10076953 10076953 T C WDR1 3'UTR 0.32 TCGA-BR-8487-01 4 101108963 101108963 C A DDIT4L Missense_Mutation p.R151S 0.16 tolerated(0.07) benign(0.095) TCGA-BR-8487-01 4 103553303 103553303 G A MANBA Nonsense_Mutation p.R851* 0.29 TCGA-BR-8487-01 4 104640312 104640312 T C TACR3 Missense_Mutation p.Y174C 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-BR-8487-01 4 104640558 104640558 T C TACR3 Missense_Mutation p.Y92C 0.31 deleterious(0) probably_damaging(0.997) TCGA-BR-8487-01 4 107165797 107165797 G T TBCK Silent p.I352I 0.39 TCGA-BR-8487-01 4 110448484 110448484 G A SEC24B Missense_Mutation p.R991Q 0.45 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 4 110682806 110682807 AG - CFI Frame_Shift_Del p.S175Yfs*5 0.27 TCGA-BR-8487-01 4 110756617 110756617 C T RRH Silent p.D131D 0.45 TCGA-BR-8487-01 4 110902085 110902085 A G EGF Silent p.S775S 0.40 TCGA-BR-8487-01 4 111398197 111398197 G T ENPEP Silent p.T209T 0.34 TCGA-BR-8487-01 4 113303616 113303616 G A ALPK1 Missense_Mutation p.V62M 0.32 deleterious(0) probably_damaging(0.998) TCGA-BR-8487-01 4 113436101 113436101 G C NEUROG2 Silent p.G177G 0.16 TCGA-BR-8487-01 4 113533738 113533738 T C C4orf21 Missense_Mutation p.K870R 0.53 tolerated(0.07) benign(0.001) TCGA-BR-8487-01 4 113570754 113570754 A - LARP7 Frame_Shift_Del p.T412Qfs*5 0.50 TCGA-BR-8487-01 4 11401560 11401560 C T HS3ST1 Missense_Mutation p.E24K 0.47 tolerated(0.8) benign(0.011) TCGA-BR-8487-01 4 118974999 118974999 A G NDST3 5'UTR 0.25 TCGA-BR-8487-01 4 119154277 119154277 A C NDST3 Silent p.R644R 0.43 TCGA-BR-8487-01 4 119158200 119158200 G T NDST3 Splice_Site p.X648_splice 0.35 TCGA-BR-8487-01 4 119176878 119176878 A G NDST3 3'UTR 0.45 TCGA-BR-8487-01 4 119216946 119216946 T C PRSS12 Missense_Mutation p.K635E 0.37 tolerated(0.45) benign(0.023) TCGA-BR-8487-01 4 120422378 120422378 T C PDE5A Missense_Mutation p.I813V 0.46 deleterious(0) possibly_damaging(0.476) TCGA-BR-8487-01 4 122749600 122749600 T C BBS7 Missense_Mutation p.Q616R 0.29 tolerated(0.06) probably_damaging(0.966) TCGA-BR-8487-01 4 122853631 122853631 C T TRPC3 Missense_Mutation p.R261Q 0.34 tolerated(0.14) benign(0.087) TCGA-BR-8487-01 4 123664251 123664251 C T BBS12 Nonsense_Mutation p.Q402* 0.51 TCGA-BR-8487-01 4 128807646 128807646 G A PLK4 Missense_Mutation p.R374H 0.25 deleterious(0) probably_damaging(0.999) TCGA-BR-8487-01 4 128815008 128815008 C T PLK4 Missense_Mutation p.P845L 0.28 tolerated(0.13) benign(0.002) TCGA-BR-8487-01 4 129869675 129869675 T - SCLT1 Frame_Shift_Del p.A424Qfs*6 0.33 TCGA-BR-8487-01 4 134071764 134071764 C T PCDH10 Missense_Mutation p.R157C 0.42 deleterious(0) possibly_damaging(0.886) TCGA-BR-8487-01 4 13579112 13579112 C A BOD1L1 Splice_Site p.X2934_splice 0.26 TCGA-BR-8487-01 4 140281667 140281667 C T NAA15 Missense_Mutation p.A475V 0.09 deleterious(0.02) probably_damaging(0.969) TCGA-BR-8487-01 4 141545515 141545515 T C TBC1D9 Missense_Mutation p.Q976R 0.36 tolerated(0.32) benign(0.021) TCGA-BR-8487-01 4 141590886 141590886 G A TBC1D9 Missense_Mutation p.R447C 0.33 tolerated(0.06) probably_damaging(0.997) TCGA-BR-8487-01 4 141789405 141789405 A C RNF150 3'UTR 0.34 TCGA-BR-8487-01 4 142053656 142053656 C T RNF150 Missense_Mutation p.D103N 0.11 tolerated(0.06) possibly_damaging(0.655) TCGA-BR-8487-01 4 142949909 142949909 T C INPP4B 3'UTR 0.40 TCGA-BR-8487-01 4 145567955 145567956 - C HHIP Frame_Shift_Ins p.K46Efs*38 0.21 TCGA-BR-8487-01 4 145659078 145659078 A G HHIP Missense_Mutation p.Y691C 0.32 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-BR-8487-01 4 145916541 145916541 T A ANAPC10 Missense_Mutation p.Y181F 0.28 tolerated(0.4) benign(0.058) TCGA-BR-8487-01 4 151000285 151000285 A G DCLK2 Missense_Mutation p.S36G 0.44 tolerated(0.62) benign(0.002) TCGA-BR-8487-01 4 152622631 152622631 G A PET112 Silent p.Y349Y 0.45 TCGA-BR-8487-01 4 153249384 153249384 C T FBXW7 Missense_Mutation p.R465H 0.42 deleterious(0) probably_damaging(0.998) TCGA-BR-8487-01 4 154512227 154512227 C T KIAA0922 Nonsense_Mutation p.R565* 0.39 TCGA-BR-8487-01 4 154553946 154553946 C T KIAA0922 Silent p.N1428N 0.40 TCGA-BR-8487-01 4 155467035 155467035 G T PLRG1 Silent p.R149R 0.14 TCGA-BR-8487-01 4 155665906 155665906 G A LRAT Missense_Mutation p.R143Q 0.10 tolerated(0.6) benign(0.01) TCGA-BR-8487-01 4 158142933 158142933 C A GRIA2 Missense_Mutation p.A68E 0.18 tolerated(0.2) benign(0.41) TCGA-BR-8487-01 4 158257028 158257028 G T GRIA2 Missense_Mutation p.G491V 0.21 deleterious(0.03) probably_damaging(0.997) TCGA-BR-8487-01 4 16020141 16020141 C T PROM1 Silent p.A269A 0.30 TCGA-BR-8487-01 4 165961350 165961350 A G TRIM60 Silent p.V42V 0.41 TCGA-BR-8487-01 4 165962586 165962586 T C TRIM60 Silent p.T454T 0.32 TCGA-BR-8487-01 4 169138063 169138063 T A DDX60 3'UTR 0.44 TCGA-BR-8487-01 4 169312784 169312784 A G DDX60L Silent p.A1274A 0.36 TCGA-BR-8487-01 4 170038929 170038929 C T SH3RF1 Missense_Mutation p.V508M 0.19 tolerated(0.18) benign(0.04) TCGA-BR-8487-01 4 170428902 170428902 C A NEK1 Missense_Mutation p.E625D 0.21 tolerated(0.13) benign(0.214) TCGA-BR-8487-01 4 174216924 174216924 T C GALNT7 Missense_Mutation p.Y299H 0.49 deleterious(0) probably_damaging(0.99) TCGA-BR-8487-01 4 174254316 174254316 T C HMGB2 Missense_Mutation p.D67G 0.38 deleterious(0.02) benign(0.152) TCGA-BR-8487-01 4 177058747 177058747 A G WDR17 Missense_Mutation p.I472M 0.35 deleterious(0.01) benign(0.367) TCGA-BR-8487-01 4 177142697 177142697 C A ASB5 Missense_Mutation p.G147C 0.10 deleterious(0) probably_damaging(0.997) TCGA-BR-8487-01 4 1809477 1809477 C A FGFR3 3'UTR 0.41 TCGA-BR-8487-01 4 1816123 1816125 AGG - LETM1 3'UTR 0.25 TCGA-BR-8487-01 4 183676001 183676001 G A TENM3 Missense_Mutation p.R1494Q 0.34 deleterious(0.01) benign(0.014) TCGA-BR-8487-01 4 183713688 183713688 A G TENM3 Missense_Mutation p.R1955G 0.34 deleterious(0) benign(0.001) TCGA-BR-8487-01 4 183714662 183714662 A G TENM3 Silent p.G2279G 0.33 TCGA-BR-8487-01 4 183836080 183836080 C T DCTD Silent p.P91P 0.30 TCGA-BR-8487-01 4 184240790 184240790 T C CLDN22 Silent p.L194L 0.48 TCGA-BR-8487-01 4 184367702 184367702 G A CDKN2AIP Missense_Mutation p.E289K 0.35 tolerated(0.51) unknown(0) TCGA-BR-8487-01 4 186097046 186097046 G A KIAA1430 Missense_Mutation p.P405L 0.31 deleterious(0) probably_damaging(0.973) TCGA-BR-8487-01 4 186510856 186510856 T - SORBS2 Frame_Shift_Del p.K1173Sfs*36 0.31 TCGA-BR-8487-01 4 187455571 187455571 G A MTNR1A Silent p.L109L 0.20 TCGA-BR-8487-01 4 187541543 187541543 A G FAT1 Missense_Mutation p.V2066A 0.36 benign(0.202) TCGA-BR-8487-01 4 187628340 187628340 C T FAT1 Missense_Mutation p.R881H 0.10 benign(0.005) TCGA-BR-8487-01 4 187630439 187630439 G A FAT1 Silent p.N181N 0.46 TCGA-BR-8487-01 4 1941496 1941496 T C WHSC1 Silent p.T624T 0.35 TCGA-BR-8487-01 4 1953854 1953854 G A WHSC1 Missense_Mutation p.S678N 0.38 tolerated(0.15) benign(0.002) TCGA-BR-8487-01 4 1985736 1985736 G T NELFA Missense_Mutation p.L392M 0.33 tolerated(0.19) probably_damaging(0.934) TCGA-BR-8487-01 4 26321499 26321499 G - RBPJ 5'UTR 0.29 TCGA-BR-8487-01 4 27024168 27024168 T C STIM2 Silent p.C605C 0.37 TCGA-BR-8487-01 4 2744179 2744179 G A TNIP2 Silent p.D365D 0.33 TCGA-BR-8487-01 4 3318583 3318583 C T RGS12 Missense_Mutation p.A229V 0.12 deleterious(0.01) probably_damaging(0.967) TCGA-BR-8487-01 4 3445813 3445813 T C HGFAC Missense_Mutation p.C175R 0.39 deleterious(0) probably_damaging(0.994) TCGA-BR-8487-01 4 3449321 3449321 C A HGFAC Silent p.T486T 0.39 TCGA-BR-8487-01 4 3494869 3494869 T C DOK7 Missense_Mutation p.C386R 0.50 deleterious(0.03) probably_damaging(0.998) TCGA-BR-8487-01 4 3494992 3494992 G A DOK7 Missense_Mutation p.G427S 0.38 tolerated_low_confidence(0.69) benign(0.003) TCGA-BR-8487-01 4 36150128 36150128 G A ARAP2 Missense_Mutation p.P967S 0.35 tolerated(0.19) benign(0.217) TCGA-BR-8487-01 4 36179455 36179455 G A ARAP2 Silent p.N617N 0.42 TCGA-BR-8487-01 4 36230285 36230285 A G ARAP2 Missense_Mutation p.V275A 0.37 tolerated_low_confidence(0.15) benign(0.217) TCGA-BR-8487-01 4 36230390 36230390 G A ARAP2 Missense_Mutation p.S240L 0.44 tolerated_low_confidence(0.21) benign(0.046) TCGA-BR-8487-01 4 37636542 37636542 C T RELL1 Missense_Mutation p.R216H 0.40 tolerated(0.21) benign(0.189) TCGA-BR-8487-01 4 38055934 38055934 G A TBC1D1 Silent p.A675A 0.38 TCGA-BR-8487-01 4 39082728 39082728 T C KLHL5 Missense_Mutation p.V237A 0.27 deleterious(0) probably_damaging(0.998) TCGA-BR-8487-01 4 3949662 3949662 C T FAM86EP RNA 0.29 TCGA-BR-8487-01 4 39871063 39871063 C T PDS5A Missense_Mutation p.G819E 0.36 tolerated(1) benign(0.059) TCGA-BR-8487-01 4 39881446 39881446 C A PDS5A Missense_Mutation p.V632L 0.34 tolerated(0.06) benign(0.126) TCGA-BR-8487-01 4 39911885 39911885 C A PDS5A Missense_Mutation p.D356Y 0.56 tolerated(0.08) benign(0.079) TCGA-BR-8487-01 4 41016408 41016408 T C APBB2 Silent p.S9S 0.31 TCGA-BR-8487-01 4 41683053 41683053 A G LIMCH1 Missense_Mutation p.M848V 0.32 tolerated(1) benign(0) TCGA-BR-8487-01 4 44624560 44624560 G A YIPF7 Silent p.I238I 0.21 TCGA-BR-8487-01 4 46264068 46264068 C T GABRA2 Missense_Mutation p.A312T 0.13 deleterious(0) probably_damaging(0.973) TCGA-BR-8487-01 4 47912972 47912972 G T NFXL1 Missense_Mutation p.A92D 0.22 tolerated(0.1) benign(0.13) TCGA-BR-8487-01 4 48490841 48490841 A G SLC10A4 Missense_Mutation p.E400G 0.12 deleterious(0.03) benign(0.008) TCGA-BR-8487-01 4 48501413 48501413 T C FRYL 3'UTR 0.17 TCGA-BR-8487-01 4 48572887 48572887 G A FRYL Nonsense_Mutation p.R985* 0.35 TCGA-BR-8487-01 4 4864432 4864432 G A MSX1 Silent p.R158R 0.37 TCGA-BR-8487-01 4 502669 502669 A G PIGG Missense_Mutation p.M271V 0.44 deleterious(0) probably_damaging(0.998) TCGA-BR-8487-01 4 52861933 52861933 C T LRRC66 Missense_Mutation p.A419T 0.40 tolerated(0.29) benign(0.015) TCGA-BR-8487-01 4 54257305 54257305 C T FIP1L1 Missense_Mutation p.T212M 0.42 tolerated(0.12) benign(0.185) TCGA-BR-8487-01 4 55139788 55139788 C T PDGFRA Silent p.T483T 0.31 TCGA-BR-8487-01 4 56840987 56840987 G A CEP135 Missense_Mutation p.R442H 0.36 tolerated(0.06) probably_damaging(0.987) TCGA-BR-8487-01 4 57244505 57244505 T - AASDH Frame_Shift_Del p.E160Rfs*8 0.25 TCGA-BR-8487-01 4 57355575 57355575 T C SRP72 Missense_Mutation p.Y416H 0.38 tolerated(0.18) benign(0.337) TCGA-BR-8487-01 4 57865857 57865857 T C POLR2B Silent p.I270I 0.45 TCGA-BR-8487-01 4 57898658 57898658 C A IGFBP7 Nonsense_Mutation p.G255* 0.37 TCGA-BR-8487-01 4 5868421 5868421 G A CRMP1 Silent p.D148D 0.48 TCGA-BR-8487-01 4 6107627 6107627 G - JAKMIP1 Frame_Shift_Del p.T66Rfs*52 0.11 TCGA-BR-8487-01 4 647749 647749 T C PDE6B Missense_Mutation p.S274P 0.27 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 4 6612880 6612880 A G MAN2B2 Missense_Mutation p.D813G 0.34 deleterious(0) probably_damaging(0.99) TCGA-BR-8487-01 4 68928294 68928294 A G TMPRSS11F Intron 0.36 TCGA-BR-8487-01 4 69973866 69973866 G A UGT2B7 Missense_Mutation p.G379D 0.42 deleterious(0) probably_damaging(0.997) TCGA-BR-8487-01 4 71024255 71024255 G T C4orf40 Missense_Mutation p.A96S 0.25 tolerated(0.61) possibly_damaging(0.866) TCGA-BR-8487-01 4 71255644 71255644 T - SMR3B 3'UTR 0.32 TCGA-BR-8487-01 4 71394459 71394459 C T AMTN Missense_Mutation p.T105I 0.50 deleterious(0) benign(0.053) TCGA-BR-8487-01 4 72634025 72634025 T C GC Missense_Mutation p.D104G 0.22 deleterious(0) possibly_damaging(0.816) TCGA-BR-8487-01 4 76489680 76489681 AA - C4orf26 Frame_Shift_Del p.S159Pfs*? 0.26 TCGA-BR-8487-01 4 77317477 77317477 C T CCDC158 Missense_Mutation p.R78H 0.53 tolerated(0.2) benign(0.004) TCGA-BR-8487-01 4 77661562 77661562 C T SHROOM3 Missense_Mutation p.P746S 0.35 tolerated(0.36) benign(0.003) TCGA-BR-8487-01 4 79793950 79793950 T C BMP2K Silent p.N597N 0.18 TCGA-BR-8487-01 4 79832337 79832337 A G BMP2K Missense_Mutation p.N879S 0.34 tolerated_low_confidence(0.33) unknown(0) TCGA-BR-8487-01 4 85525494 85525495 - A CDS1 Frame_Shift_Ins p.A75Sfs*51 0.32 TCGA-BR-8487-01 4 85676453 85676453 A - WDFY3 Frame_Shift_Del p.L1842Yfs*10 0.18 TCGA-BR-8487-01 4 85719240 85719240 A G WDFY3 Silent p.S948S 0.38 TCGA-BR-8487-01 4 85731038 85731038 A G WDFY3 Splice_Site p.X782_splice 0.37 TCGA-BR-8487-01 4 87684338 87684338 A G PTPN13 Missense_Mutation p.K1338E 0.29 tolerated(0.14) benign(0.373) TCGA-BR-8487-01 4 88091339 88091339 C T KLHL8 Missense_Mutation p.V477M 0.09 deleterious(0.03) probably_damaging(0.983) TCGA-BR-8487-01 4 8869697 8869697 T C HMX1 Missense_Mutation p.K257E 0.29 deleterious(0) probably_damaging(0.998) TCGA-BR-8487-01 4 88767622 88767622 T C MEPE 3'UTR 0.43 TCGA-BR-8487-01 4 89442829 89442829 C T PIGY Missense_Mutation p.A38T 0.22 tolerated(0.57) benign(0.001) TCGA-BR-8487-01 4 90856582 90856582 A G MMRN1 Missense_Mutation p.E584G 0.28 deleterious(0.03) benign(0.059) TCGA-BR-8487-01 4 91229794 91229794 G A CCSER1 Missense_Mutation p.S120N 0.37 deleterious(0.05) benign(0.007) TCGA-BR-8487-01 4 954956 954956 G A DGKQ Missense_Mutation p.R870W 0.49 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 4 96140294 96140294 G - UNC5C Frame_Shift_Del p.Q491Kfs*15 0.28 TCGA-BR-8487-01 4 99579526 99579526 C T TSPAN5 5'UTR 0.64 TCGA-BR-8487-01 5 102249696 102249696 C T PAM Silent p.C109C 0.35 TCGA-BR-8487-01 5 1053568 1053568 G A SLC12A7 Missense_Mutation p.T1019M 0.42 deleterious(0) probably_damaging(0.953) TCGA-BR-8487-01 5 1081759 1081759 G T SLC12A7 Silent p.P410P 0.10 TCGA-BR-8487-01 5 111600713 111600713 G A EPB41L4A Missense_Mutation p.S145L 0.09 deleterious(0) possibly_damaging(0.543) TCGA-BR-8487-01 5 112163629 112163629 A G APC Missense_Mutation p.T518A 0.37 benign(0.108) TCGA-BR-8487-01 5 112164588 112164588 A C APC Silent p.R554R 0.33 TCGA-BR-8487-01 5 112399736 112399736 C T MCC Missense_Mutation p.V720M 0.42 tolerated(0.17) benign(0.29) TCGA-BR-8487-01 5 115319108 115319108 T C AQPEP Missense_Mutation p.S274P 0.40 deleterious(0) probably_damaging(0.998) TCGA-BR-8487-01 5 115818188 115818188 G T SEMA6A Missense_Mutation p.P349H 0.31 deleterious(0) possibly_damaging(0.603) TCGA-BR-8487-01 5 118480239 118480239 A - DMXL1 Frame_Shift_Del p.T827Pfs*13 0.24 TCGA-BR-8487-01 5 118485620 118485620 T A DMXL1 Missense_Mutation p.N1366K 0.30 deleterious(0.03) possibly_damaging(0.474) TCGA-BR-8487-01 5 122714072 122714072 G T CEP120 Missense_Mutation p.D718E 0.35 tolerated(0.09) benign(0.012) TCGA-BR-8487-01 5 122926163 122926163 T C CSNK1G3 Missense_Mutation p.Y301H 0.36 deleterious(0.02) probably_damaging(1) TCGA-BR-8487-01 5 127641256 127641256 T C FBN2 Missense_Mutation p.Y1874C 0.39 deleterious(0) probably_damaging(0.995) TCGA-BR-8487-01 5 129030453 129030454 - A ADAMTS19 Frame_Shift_Ins p.N949Kfs*8 0.24 TCGA-BR-8487-01 5 130726771 130726771 C T CDC42SE2 Missense_Mutation p.T81M 0.28 deleterious_low_confidence(0.03) probably_damaging(0.93) TCGA-BR-8487-01 5 130782200 130782200 G A RAPGEF6 Nonsense_Mutation p.Q1141* 0.36 TCGA-BR-8487-01 5 131728210 131728210 C T SLC22A5 Silent p.A451A 0.43 TCGA-BR-8487-01 5 131931338 131931338 C T RAD50 Silent p.C681C 0.45 TCGA-BR-8487-01 5 131939124 131939124 T C RAD50 Silent p.P780P 0.42 TCGA-BR-8487-01 5 132088655 132088655 C T CCNI2 Missense_Mutation p.A368V 0.34 tolerated_low_confidence(0.09) benign(0.365) TCGA-BR-8487-01 5 135692515 135692515 G A TRPC7 Silent p.G187G 0.35 TCGA-BR-8487-01 5 137230252 137230252 T C PKD2L2 Missense_Mutation p.S160P 0.32 tolerated(0.34) benign(0.008) TCGA-BR-8487-01 5 137464980 137464980 A G NME5 Silent p.L103L 0.32 TCGA-BR-8487-01 5 137475742 137475742 A G BRD8 3'UTR 0.12 TCGA-BR-8487-01 5 13753574 13753574 C T DNAH5 Missense_Mutation p.R3547Q 0.42 benign(0.005) TCGA-BR-8487-01 5 137903347 137903347 C T HSPA9 Silent p.S200S 0.34 TCGA-BR-8487-01 5 138643543 138643545 AGG - MATR3 In_Frame_Del p.R149del 0.30 TCGA-BR-8487-01 5 138715727 138715727 C T SLC23A1 Missense_Mutation p.R233H 0.26 deleterious(0.02) benign(0.43) TCGA-BR-8487-01 5 138857068 138857068 G - TMEM173 Frame_Shift_Del p.L265Cfs*82 0.33 TCGA-BR-8487-01 5 139745425 139745425 G A SLC4A9 Missense_Mutation p.G597S 0.39 tolerated(0.45) benign(0.192) TCGA-BR-8487-01 5 139750733 139750733 G A SLC4A9 Silent p.A851A 0.63 TCGA-BR-8487-01 5 139941704 139941704 C T APBB3 Missense_Mutation p.V203M 0.30 deleterious(0) probably_damaging(0.998) TCGA-BR-8487-01 5 140073551 140073551 T C HARS2 Missense_Mutation p.V72A 0.40 tolerated(1) benign(0) TCGA-BR-8487-01 5 140085215 140085215 G A ZMAT2 Silent p.A158A 0.36 TCGA-BR-8487-01 5 140166895 140166895 G A PCDHA1 Silent p.V340V 0.10 TCGA-BR-8487-01 5 140182288 140182288 C T PCDHA3 Silent p.R502R 0.10 TCGA-BR-8487-01 5 140215836 140215836 G A PCDHA7 Missense_Mutation p.R623H 0.26 deleterious_low_confidence(0.01) benign(0.287) TCGA-BR-8487-01 5 140347507 140347507 G A PCDHAC2 Missense_Mutation p.V386I 0.35 deleterious(0.02) benign(0.021) TCGA-BR-8487-01 5 140347896 140347896 G A PCDHAC2 Silent p.G515G 0.45 TCGA-BR-8487-01 5 140475902 140475902 G A PCDHB2 Missense_Mutation p.A510T 0.39 deleterious_low_confidence(0.05) benign(0.327) TCGA-BR-8487-01 5 140481019 140481019 C T PCDHB3 Silent p.V262V 0.53 TCGA-BR-8487-01 5 140482199 140482199 G A PCDHB3 Missense_Mutation p.A656T 0.28 deleterious_low_confidence(0.01) benign(0.105) TCGA-BR-8487-01 5 140515726 140515726 A G PCDHB5 Missense_Mutation p.D237G 0.37 deleterious_low_confidence(0) possibly_damaging(0.605) TCGA-BR-8487-01 5 140563826 140563826 G A PCDHB16 Silent p.P564P 0.17 TCGA-BR-8487-01 5 140573722 140573722 G T PCDHB10 Missense_Mutation p.A533S 0.14 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-BR-8487-01 5 140574355 140574355 G A PCDHB10 Missense_Mutation p.A744T 0.24 tolerated_low_confidence(1) benign(0.002) TCGA-BR-8487-01 5 140581035 140581035 A G PCDHB11 Missense_Mutation p.Y563C 0.05 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-BR-8487-01 5 140604455 140604455 G A PCDHB14 Missense_Mutation p.V460I 0.40 tolerated_low_confidence(0.16) benign(0.042) TCGA-BR-8487-01 5 140604825 140604825 G A PCDHB14 Missense_Mutation p.G583D 0.24 deleterious_low_confidence(0.01) probably_damaging(0.936) TCGA-BR-8487-01 5 140616304 140616304 G T PCDHB18 RNA 0.42 TCGA-BR-8487-01 5 140712134 140712134 C T PCDHGA1 Missense_Mutation p.T628M 0.37 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BR-8487-01 5 140720244 140720244 C T PCDHGA2 Missense_Mutation p.T569I 0.39 deleterious_low_confidence(0.03) benign(0.103) TCGA-BR-8487-01 5 140724590 140724590 A G PCDHGA3 Silent p.R330R 0.34 TCGA-BR-8487-01 5 140730922 140730922 A - PCDHGB1 Frame_Shift_Del p.V367Cfs*12 0.26 TCGA-BR-8487-01 5 140731931 140731931 G A PCDHGB1 Missense_Mutation p.A702T 0.25 tolerated(0.81) benign(0.256) TCGA-BR-8487-01 5 140744704 140744704 A C PCDHGA5 Silent p.P269P 0.40 TCGA-BR-8487-01 5 140773186 140773186 C T PCDHGA8 Missense_Mutation p.P269L 0.27 tolerated_low_confidence(0.29) benign(0.06) TCGA-BR-8487-01 5 140801741 140801741 A G PCDHGA11 Missense_Mutation p.Y316C 0.42 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BR-8487-01 5 140856553 140856553 C T PCDHGC3 Silent p.G290G 0.39 TCGA-BR-8487-01 5 140868884 140868884 G - PCDHGC5 Frame_Shift_Del p.V27Cfs*28 0.09 TCGA-BR-8487-01 5 140960325 140960325 C T DIAPH1 Silent p.P270P 0.40 TCGA-BR-8487-01 5 141028814 141028814 C T FCHSD1 Missense_Mutation p.R146Q 0.35 deleterious(0.03) benign(0.428) TCGA-BR-8487-01 5 141051820 141051820 C T ARAP3 Silent p.L478L 0.09 TCGA-BR-8487-01 5 141313826 141313826 G A KIAA0141 Missense_Mutation p.A307T 0.33 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 5 14291024 14291024 C T TRIO Missense_Mutation p.P247L 0.35 probably_damaging(0.991) TCGA-BR-8487-01 5 14387627 14387627 A - TRIO Frame_Shift_Del p.K1219Nfs*43 0.08 TCGA-BR-8487-01 5 1467001 1467001 T C LPCAT1 Missense_Mutation p.Y428C 0.27 deleterious(0) benign(0.078) TCGA-BR-8487-01 5 1477549 1477549 T C LPCAT1 Missense_Mutation p.Y290C 0.36 deleterious(0) probably_damaging(0.928) TCGA-BR-8487-01 5 147807425 147807425 C T FBXO38 Intron 0.18 TCGA-BR-8487-01 5 147820078 147820078 T C FBXO38 Missense_Mutation p.Y1013H 0.55 tolerated(0.12) probably_damaging(0.997) TCGA-BR-8487-01 5 149225444 149225444 C T PPARGC1B Missense_Mutation p.R980W 0.40 deleterious(0.02) possibly_damaging(0.696) TCGA-BR-8487-01 5 1501684 1501684 C T LPCAT1 Missense_Mutation p.R57Q 0.24 deleterious(0) probably_damaging(0.999) TCGA-BR-8487-01 5 150885144 150885144 A G FAT2 Silent p.C4344C 0.33 TCGA-BR-8487-01 5 151179536 151179536 T C G3BP1 Silent p.I310I 0.46 TCGA-BR-8487-01 5 154065380 154065383 TTTA - MIR1303 RNA 0.59 TCGA-BR-8487-01 5 156535954 156535954 A G HAVCR2 Missense_Mutation p.L14P 0.25 deleterious(0) probably_damaging(0.962) TCGA-BR-8487-01 5 156566347 156566347 G T MED7 Silent p.P32P 0.35 TCGA-BR-8487-01 5 156816338 156816338 G A CYFIP2 Missense_Mutation p.V1091I 0.44 tolerated(0.08) benign(0.358) TCGA-BR-8487-01 5 158139180 158139180 C T EBF1 Missense_Mutation p.A511T 0.26 tolerated_low_confidence(0.29) benign(0.006) TCGA-BR-8487-01 5 159659202 159659202 C T FABP6 Silent p.S104S 0.27 TCGA-BR-8487-01 5 159776035 159776035 A - C1QTNF2 3'UTR 0.36 TCGA-BR-8487-01 5 159822094 159822094 T - C5orf54 Frame_Shift_Del p.K135Sfs*11 0.08 TCGA-BR-8487-01 5 161317985 161317985 T C GABRA1 Missense_Mutation p.I262T 0.10 tolerated(0.05) possibly_damaging(0.692) TCGA-BR-8487-01 5 161322768 161322768 C T GABRA1 Missense_Mutation p.A318V 0.39 deleterious(0) probably_damaging(0.992) TCGA-BR-8487-01 5 167553862 167553862 C - TENM2 Frame_Shift_Del p.R773Afs*127 0.46 TCGA-BR-8487-01 5 167812369 167812369 A G WWC1 Missense_Mutation p.Y128C 0.35 deleterious(0) probably_damaging(0.979) TCGA-BR-8487-01 5 168139285 168139285 T C SLIT3 Intron 0.37 TCGA-BR-8487-01 5 169533034 169533034 C - FOXI1 Frame_Shift_Del p.E27Rfs*2 0.32 TCGA-BR-8487-01 5 171523526 171523526 C T STK10 Silent p.L303L 0.39 TCGA-BR-8487-01 5 171661162 171661162 C T UBTD2 Missense_Mutation p.A91T 0.28 deleterious(0) probably_damaging(0.943) TCGA-BR-8487-01 5 171765310 171765310 G A SH3PXD2B 3'UTR 0.15 TCGA-BR-8487-01 5 171766334 171766334 T - SH3PXD2B Frame_Shift_Del p.N592Mfs*16 0.28 TCGA-BR-8487-01 5 172196764 172196764 G A DUSP1 Silent p.L183L 0.09 TCGA-BR-8487-01 5 172661785 172661785 T C NKX2-5 Missense_Mutation p.D101G 0.46 tolerated(0.1) probably_damaging(0.956) TCGA-BR-8487-01 5 173378896 173378896 C T CPEB4 Nonsense_Mutation p.R579* 0.21 TCGA-BR-8487-01 5 175959073 175959073 C T RNF44 Missense_Mutation p.G77S 0.25 tolerated(1) benign(0.014) TCGA-BR-8487-01 5 176026665 176026665 G - GPRIN1 Frame_Shift_Del p.R58Gfs*78 0.18 TCGA-BR-8487-01 5 176520461 176520461 G A FGFR4 Missense_Mutation p.V436M 0.41 deleterious(0.01) possibly_damaging(0.655) TCGA-BR-8487-01 5 176915118 176915118 T C PDLIM7 Missense_Mutation p.D334G 0.40 tolerated(0.1) possibly_damaging(0.794) TCGA-BR-8487-01 5 176918070 176918070 G A PDLIM7 Missense_Mutation p.P159L 0.29 deleterious(0.04) benign(0.014) TCGA-BR-8487-01 5 176951522 176951522 G - FAM193B Frame_Shift_Del p.R654Gfs*6 0.21 TCGA-BR-8487-01 5 177034445 177034445 G A B4GALT7 Missense_Mutation p.A186T 0.47 tolerated(0.06) probably_damaging(0.976) TCGA-BR-8487-01 5 177175650 177175650 C T FAM153A 5'UTR 0.14 TCGA-BR-8487-01 5 178045622 178045622 G A CLK4 Missense_Mutation p.R107C 0.34 deleterious(0) possibly_damaging(0.891) TCGA-BR-8487-01 5 178416065 178416065 A G GRM6 Missense_Mutation p.Y409H 0.11 deleterious(0.01) probably_damaging(0.992) TCGA-BR-8487-01 5 178585754 178585754 G A ADAMTS2 Missense_Mutation p.R368W 0.23 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 5 179044644 179044644 A - HNRNPH1 Frame_Shift_Del p.S310Hfs*6 0.27 TCGA-BR-8487-01 5 179226267 179226267 T C MGAT4B Missense_Mutation p.K377R 0.35 tolerated(0.31) benign(0.147) TCGA-BR-8487-01 5 179555581 179555581 T C RASGEF1C Silent p.L156L 0.09 TCGA-BR-8487-01 5 179555592 179555592 G A RASGEF1C Missense_Mutation p.H153Y 0.45 tolerated(0.05) benign(0.222) TCGA-BR-8487-01 5 179731781 179731781 C T GFPT2 Silent p.T611T 0.08 TCGA-BR-8487-01 5 180048800 180048800 G T FLT4 Missense_Mutation p.L588M 0.50 deleterious(0.01) possibly_damaging(0.686) TCGA-BR-8487-01 5 180630563 180630565 CTT - TRIM7 In_Frame_Del p.K200del 0.34 TCGA-BR-8487-01 5 19473809 19473809 A - CDH18 Frame_Shift_Del p.F633Lfs*4 0.29 TCGA-BR-8487-01 5 21802400 21802400 C T CDH12 Missense_Mutation p.V378I 0.26 tolerated(0.07) benign(0.064) TCGA-BR-8487-01 5 23522902 23522902 G C PRDM9 Missense_Mutation p.A264P 0.33 deleterious(0.01) possibly_damaging(0.679) TCGA-BR-8487-01 5 31511219 31511219 A G DROSHA Missense_Mutation p.L452S 0.29 deleterious(0) probably_damaging(0.99) TCGA-BR-8487-01 5 33456256 33456256 G A TARS Missense_Mutation p.C287Y 0.45 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 5 33938173 33938173 C A RXFP3 Missense_Mutation p.P443Q 0.36 deleterious(0) probably_damaging(0.982) TCGA-BR-8487-01 5 34005900 34005900 G A AMACR Missense_Mutation p.R118W 0.38 deleterious(0.01) benign(0.343) TCGA-BR-8487-01 5 34020736 34020736 G C C1QTNF3 Missense_Mutation p.H304Q 0.39 tolerated(0.07) probably_damaging(0.941) TCGA-BR-8487-01 5 34823970 34823970 T C RAI14 Missense_Mutation p.Y678H 0.38 tolerated(0.06) probably_damaging(0.983) TCGA-BR-8487-01 5 35086328 35086328 A G PRLR Missense_Mutation p.L62P 0.34 deleterious(0) probably_damaging(0.989) TCGA-BR-8487-01 5 36953835 36953835 C A NIPBL Missense_Mutation p.L13I 0.15 deleterious(0) probably_damaging(0.994) TCGA-BR-8487-01 5 37183688 37183688 T C C5orf42 Missense_Mutation p.Q1532R 0.40 deleterious(0.02) benign(0.038) TCGA-BR-8487-01 5 37697794 37697794 C T WDR70 Missense_Mutation p.S377L 0.17 tolerated(0.18) benign(0.018) TCGA-BR-8487-01 5 38506647 38506647 G A LIFR Missense_Mutation p.A360V 0.33 tolerated(0.16) benign(0.033) TCGA-BR-8487-01 5 39203040 39203040 C - FYB Frame_Shift_Del p.G18Afs*76 0.23 TCGA-BR-8487-01 5 39341309 39341309 G A C9 Missense_Mutation p.R139C 0.32 deleterious(0) probably_damaging(0.993) TCGA-BR-8487-01 5 43174664 43174664 A G ZNF131 Missense_Mutation p.E400G 0.38 deleterious(0.02) probably_damaging(0.913) TCGA-BR-8487-01 5 43505850 43505850 C A C5orf34 Missense_Mutation p.R311M 0.09 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 5 45262085 45262085 A G HCN1 Missense_Mutation p.S871P 0.47 tolerated_low_confidence(0.16) benign(0.001) TCGA-BR-8487-01 5 45262174 45262174 A T HCN1 Missense_Mutation p.L841H 0.39 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-BR-8487-01 5 45262506 45262506 C T HCN1 Missense_Mutation p.M730I 0.17 tolerated_low_confidence(0.68) benign(0) TCGA-BR-8487-01 5 50090765 50090765 G C PARP8 Silent p.T314T 0.37 TCGA-BR-8487-01 5 52779453 52779453 G A FST Missense_Mutation p.G133R 0.43 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 5 54941671 54941671 A - SLC38A9 Frame_Shift_Del p.F371Lfs*10 0.30 TCGA-BR-8487-01 5 55185844 55185844 A G IL31RA Missense_Mutation p.Y218C 0.08 tolerated(0.18) benign(0.031) TCGA-BR-8487-01 5 55455711 55455711 C T ANKRD55 Silent p.T144T 0.41 TCGA-BR-8487-01 5 57753397 57753397 T C PLK2 Missense_Mutation p.T243A 0.29 deleterious(0.01) probably_damaging(0.943) TCGA-BR-8487-01 5 58147175 58147175 C T RAB3C Silent p.C227C 0.15 TCGA-BR-8487-01 5 59982907 59982907 C T DEPDC1B Missense_Mutation p.E66K 0.38 deleterious(0.02) probably_damaging(0.976) TCGA-BR-8487-01 5 60455971 60455971 A G SMIM15 Missense_Mutation p.Y10H 0.40 tolerated(0.15) possibly_damaging(0.679) TCGA-BR-8487-01 5 63905114 63905114 A - RGS7BP 3'UTR 0.28 TCGA-BR-8487-01 5 64865507 64865508 - A PPWD1 Frame_Shift_Ins p.I119Nfs*6 0.32 TCGA-BR-8487-01 5 6620235 6620236 AT - NSUN2 Frame_Shift_Del p.C267* 0.28 TCGA-BR-8487-01 5 6631983 6631983 T C NSUN2 Intron 0.41 TCGA-BR-8487-01 5 66460174 66460174 G T MAST4 Missense_Mutation p.V1723F 0.34 benign(0.275) TCGA-BR-8487-01 5 66462833 66462833 G - MAST4 Frame_Shift_Del p.E2612Rfs*73 0.26 TCGA-BR-8487-01 5 68805476 68805476 T C OCLN Missense_Mutation p.F187L 0.39 tolerated(1) benign(0.446) TCGA-BR-8487-01 5 70751890 70751890 G A BDP1 Silent p.E62E 0.19 TCGA-BR-8487-01 5 70837318 70837319 - A BDP1 Frame_Shift_Ins p.S2022Kfs*6 0.30 TCGA-BR-8487-01 5 71740012 71740012 C A ZNF366 Silent p.P602P 0.10 TCGA-BR-8487-01 5 71743139 71743139 G - ZNF366 Frame_Shift_Del p.L544* 0.22 TCGA-BR-8487-01 5 72171563 72171563 A C TNPO1 Missense_Mutation p.E267A 0.40 deleterious(0.01) benign(0.229) TCGA-BR-8487-01 5 72201192 72201192 T C TNPO1 Silent p.F884F 0.38 TCGA-BR-8487-01 5 72469088 72469088 C T TMEM174 Silent p.G6G 0.44 TCGA-BR-8487-01 5 74655258 74655258 T C HMGCR Silent p.I778I 0.45 TCGA-BR-8487-01 5 74722269 74722269 C T COL4A3BP Missense_Mutation p.R256H 0.26 tolerated(0.08) possibly_damaging(0.897) TCGA-BR-8487-01 5 74893608 74893609 - A POLK Frame_Shift_Ins p.R843Kfs*24 0.33 TCGA-BR-8487-01 5 75913673 75913673 G T F2RL2 Silent p.R287R 0.19 TCGA-BR-8487-01 5 82832816 82832816 T - VCAN Intron 0.31 TCGA-BR-8487-01 5 82834774 82834774 T G VCAN Silent p.S1984S 0.09 TCGA-BR-8487-01 5 83680139 83680139 G A EDIL3 Silent p.P18P 0.10 TCGA-BR-8487-01 5 86690738 86690738 A - CCNH Intron 0.33 TCGA-BR-8487-01 5 89815219 89815219 T - LYSMD3 Frame_Shift_Del p.K113Sfs*5 0.26 TCGA-BR-8487-01 5 9197388 9197388 G A SEMA5A Silent p.C320C 0.41 TCGA-BR-8487-01 5 93076928 93076928 C T POU5F2 Silent p.P114P 0.22 TCGA-BR-8487-01 5 93217235 93217235 A G FAM172A Missense_Mutation p.F243L 0.40 deleterious(0.02) benign(0.251) TCGA-BR-8487-01 5 94278101 94278101 C T MCTP1 Missense_Mutation p.D338N 0.34 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 5 95116060 95116060 G A RHOBTB3 Missense_Mutation p.V463I 0.47 tolerated(0.81) benign(0.165) TCGA-BR-8487-01 5 95746544 95746544 G A PCSK1 Silent p.Y343Y 0.42 TCGA-BR-8487-01 5 95768714 95768714 A G PCSK1 Silent p.T11T 0.29 TCGA-BR-8487-01 5 99871377 99871377 C A FAM174A Missense_Mutation p.P48H 0.45 tolerated_low_confidence(0.31) benign(0.001) TCGA-BR-8487-01 6 10398771 10398771 A G TFAP2A Missense_Mutation p.L398P 0.42 deleterious(0) possibly_damaging(0.903) TCGA-BR-8487-01 6 107390110 107390110 T C BEND3 Missense_Mutation p.N762S 0.45 tolerated(0.08) probably_damaging(0.998) TCGA-BR-8487-01 6 107390608 107390608 T C BEND3 Missense_Mutation p.N596S 0.51 deleterious(0) probably_damaging(0.998) TCGA-BR-8487-01 6 107391602 107391602 C - BEND3 Frame_Shift_Del p.D265Tfs*54 0.32 TCGA-BR-8487-01 6 108066261 108066261 G C SCML4 Missense_Mutation p.L192V 0.41 deleterious(0.01) probably_damaging(0.938) TCGA-BR-8487-01 6 108508598 108508599 - A NR2E1 Frame_Shift_Ins p.T366Nfs*19 0.21 TCGA-BR-8487-01 6 109774467 109774467 C A MICAL1 Missense_Mutation p.K190N 0.21 tolerated(0.17) benign(0.438) TCGA-BR-8487-01 6 109802745 109802745 C T ZBTB24 Missense_Mutation p.R162Q 0.39 deleterious(0.01) probably_damaging(0.988) TCGA-BR-8487-01 6 109983847 109983847 T C AK9 Missense_Mutation p.I117M 0.39 tolerated(0.15) benign(0.068) TCGA-BR-8487-01 6 110423373 110423373 C T WASF1 Missense_Mutation p.G314S 0.25 tolerated(0.19) unknown(0) TCGA-BR-8487-01 6 111288882 111288882 T C GTF3C6 Silent p.S177S 0.38 TCGA-BR-8487-01 6 111688632 111688632 G - REV3L Frame_Shift_Del p.P2120Lfs*5 0.25 TCGA-BR-8487-01 6 111697073 111697073 G T REV3L Silent p.R829R 0.43 TCGA-BR-8487-01 6 111884186 111884186 G A TRAF3IP2 Silent p.L511L 0.47 TCGA-BR-8487-01 6 112461980 112461980 T A LAMA4 Silent p.G986G 0.28 TCGA-BR-8487-01 6 112461999 112461999 G C LAMA4 Missense_Mutation p.T980R 0.24 deleterious(0.01) possibly_damaging(0.846) TCGA-BR-8487-01 6 112512907 112512907 T C LAMA4 Missense_Mutation p.T217A 0.25 tolerated(0.91) possibly_damaging(0.9) TCGA-BR-8487-01 6 114181628 114181628 C T MARCKS Missense_Mutation p.P291L 0.53 tolerated_low_confidence(0.12) unknown(0) TCGA-BR-8487-01 6 116542304 116542304 G A NT5DC1 Missense_Mutation p.R206Q 0.39 tolerated(0.13) benign(0.009) TCGA-BR-8487-01 6 116758093 116758093 C T DSE Missense_Mutation p.A821V 0.22 tolerated_low_confidence(0.09) benign(0.124) TCGA-BR-8487-01 6 116879011 116879011 C A FAM26D Silent p.T51T 0.49 TCGA-BR-8487-01 6 119327663 119327663 G T FAM184A Missense_Mutation p.D588E 0.15 tolerated(0.39) benign(0.012) TCGA-BR-8487-01 6 12015864 12015864 G A HIVEP1 Translation_Start_Site p.M1? 0.22 deleterious(0.01) possibly_damaging(0.878) TCGA-BR-8487-01 6 12124064 12124064 A G HIVEP1 Missense_Mutation p.M1346V 0.47 tolerated(0.77) benign(0.001) TCGA-BR-8487-01 6 122733884 122733884 A G HSF2 Missense_Mutation p.D102G 0.45 deleterious(0.03) probably_damaging(0.981) TCGA-BR-8487-01 6 123824907 123824907 C A TRDN Missense_Mutation p.K250N 0.50 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-BR-8487-01 6 125283913 125283913 C - RP11-510H23.1 Intron 0.40 TCGA-BR-8487-01 6 126242091 126242091 C A NCOA7 Silent p.I749I 0.31 TCGA-BR-8487-01 6 127517206 127517206 C A RSPO3 3'UTR 0.10 TCGA-BR-8487-01 6 128388839 128388839 G A PTPRK Missense_Mutation p.A661V 0.40 deleterious(0.02) probably_damaging(0.987) TCGA-BR-8487-01 6 128399981 128399981 T C PTPRK Silent p.A620A 0.11 TCGA-BR-8487-01 6 129608990 129608990 A G LAMA2 Splice_Site p.X846_splice 0.10 TCGA-BR-8487-01 6 131206353 131206353 C T EPB41L2 Silent p.G572G 0.19 TCGA-BR-8487-01 6 131912629 131912629 A G MED23 Silent p.S1170S 0.45 TCGA-BR-8487-01 6 132022490 132022490 C T OR2A4 Missense_Mutation p.V18I 0.09 tolerated(0.11) benign(0.002) TCGA-BR-8487-01 6 132270418 132270418 C T CTGF Missense_Mutation p.G346R 0.37 deleterious(0) probably_damaging(0.998) TCGA-BR-8487-01 6 132270441 132270441 G A CTGF Missense_Mutation p.S338L 0.41 tolerated(0.13) possibly_damaging(0.783) TCGA-BR-8487-01 6 132910558 132910558 G T TAAR5 Missense_Mutation p.L90I 0.46 deleterious(0.03) benign(0.024) TCGA-BR-8487-01 6 133044009 133044009 T - VNN3 3'Flank 0.25 TCGA-BR-8487-01 6 133783831 133783831 G A EYA4 Missense_Mutation p.G218D 0.45 deleterious(0) probably_damaging(0.935) TCGA-BR-8487-01 6 136597544 136597544 T C BCLAF1 Silent p.G373G 0.18 TCGA-BR-8487-01 6 137323176 137323176 G - IL20RA Frame_Shift_Del p.P394Rfs*64 0.23 TCGA-BR-8487-01 6 143093049 143093049 G A HIVEP2 Nonsense_Mutation p.R943* 0.32 TCGA-BR-8487-01 6 144086872 144086872 C T PHACTR2 Missense_Mutation p.P390L 0.17 tolerated_low_confidence(0.16) benign(0.294) TCGA-BR-8487-01 6 144803436 144803436 G A UTRN Missense_Mutation p.G1200D 0.47 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 6 147124814 147124814 C T ADGB Intron 0.26 TCGA-BR-8487-01 6 148840732 148840732 C T SASH1 Silent p.S304S 0.48 TCGA-BR-8487-01 6 148865778 148865778 C - SASH1 Frame_Shift_Del p.W1060Gfs*16 0.34 TCGA-BR-8487-01 6 149262500 149262500 C T UST Missense_Mutation p.S126L 0.23 deleterious(0.01) possibly_damaging(0.728) TCGA-BR-8487-01 6 149826728 149826728 C T PPIL4 Missense_Mutation p.R447Q 0.33 tolerated(0.14) benign(0.115) TCGA-BR-8487-01 6 149918221 149918221 C T KATNA1 Missense_Mutation p.A419T 0.22 deleterious(0.03) probably_damaging(0.994) TCGA-BR-8487-01 6 149959711 149959711 A - KATNA1 Intron 0.19 TCGA-BR-8487-01 6 150114765 150114765 C T PCMT1 Silent p.D184D 0.24 TCGA-BR-8487-01 6 151130806 151130806 G T PLEKHG1 Missense_Mutation p.R405L 0.39 deleterious(0) possibly_damaging(0.457) TCGA-BR-8487-01 6 151687417 151687417 G A ZBTB2 Missense_Mutation p.R262C 0.42 deleterious(0.02) probably_damaging(0.998) TCGA-BR-8487-01 6 152590320 152590320 C T SYNE1 Silent p.Q6225Q 0.18 TCGA-BR-8487-01 6 152605226 152605226 A G SYNE1 Missense_Mutation p.S6032P 0.44 benign(0.002) TCGA-BR-8487-01 6 152762390 152762391 - T SYNE1 Frame_Shift_Ins p.W1342Mfs*5 0.33 TCGA-BR-8487-01 6 153075360 153075360 A T VIP Missense_Mutation p.E56V 0.64 tolerated(0.29) benign(0) TCGA-BR-8487-01 6 153315697 153315697 C T MTRF1L Missense_Mutation p.R213H 0.31 deleterious(0) probably_damaging(0.993) TCGA-BR-8487-01 6 15512511 15512511 G A JARID2 Missense_Mutation p.V1009I 0.32 tolerated(0.12) possibly_damaging(0.68) TCGA-BR-8487-01 6 155145472 155145472 T - SCAF8 Frame_Shift_Del p.L679* 0.28 TCGA-BR-8487-01 6 155153803 155153803 T - SCAF8 Frame_Shift_Del p.P1032Lfs*12 0.23 TCGA-BR-8487-01 6 155579106 155579106 C T TFB1M Missense_Mutation p.S302N 0.45 tolerated(0.57) benign(0.005) TCGA-BR-8487-01 6 160169553 160169553 G T WTAP Intron 0.40 TCGA-BR-8487-01 6 160493903 160493903 C T IGF2R Silent p.C1559C 0.17 TCGA-BR-8487-01 6 160523613 160523613 G A IGF2R Missense_Mutation p.R2302Q 0.32 deleterious(0) probably_damaging(0.946) TCGA-BR-8487-01 6 160670398 160670398 C T SLC22A2 Missense_Mutation p.R231Q 0.29 tolerated(0.09) benign(0.001) TCGA-BR-8487-01 6 160868775 160868775 G A SLC22A3 Missense_Mutation p.G512D 0.54 deleterious(0.01) possibly_damaging(0.475) TCGA-BR-8487-01 6 163984516 163984516 G A QKI Silent p.A233A 0.27 TCGA-BR-8487-01 6 165706838 165706838 G A C6orf118 Intron 0.49 TCGA-BR-8487-01 6 165715177 165715177 C T C6orf118 Missense_Mutation p.A212T 0.43 tolerated(0.31) benign(0.223) TCGA-BR-8487-01 6 165746572 165746572 G A PDE10A Missense_Mutation p.T771I 0.20 tolerated_low_confidence(0.1) benign(0.002) TCGA-BR-8487-01 6 166571665 166571665 C T T 3'UTR 0.24 TCGA-BR-8487-01 6 166574379 166574379 G A T Missense_Mutation p.A327V 0.37 tolerated(0.13) benign(0.04) TCGA-BR-8487-01 6 167416821 167416821 T - FGFR1OP Intron 0.53 TCGA-BR-8487-01 6 168370555 168370556 - A MLLT4 Frame_Shift_Ins p.N295Kfs*2 0.24 TCGA-BR-8487-01 6 169648522 169648523 CT - THBS2 Frame_Shift_Del p.H201Lfs*13 0.31 TCGA-BR-8487-01 6 170143237 170143237 T C TCTE3 Missense_Mutation p.Y142C 0.41 deleterious(0) probably_damaging(0.916) TCGA-BR-8487-01 6 170176681 170176681 A G ERMARD Missense_Mutation p.T551A 0.10 tolerated(0.52) benign(0.001) TCGA-BR-8487-01 6 170632310 170632310 A G FAM120B Silent p.R626R 0.40 TCGA-BR-8487-01 6 1726689 1726689 G A GMDS Silent p.H316H 0.41 TCGA-BR-8487-01 6 17292068 17292068 C T RBM24 Silent p.A143A 0.20 TCGA-BR-8487-01 6 17292140 17292140 C T RBM24 Silent p.A167A 0.43 TCGA-BR-8487-01 6 17292143 17292143 C T RBM24 Silent p.A168A 0.44 TCGA-BR-8487-01 6 17601001 17601001 C T FAM8A1 Silent p.L121L 0.32 TCGA-BR-8487-01 6 17602852 17602852 C T FAM8A1 Silent p.H248H 0.31 TCGA-BR-8487-01 6 17616311 17616311 C T NUP153 3'UTR 0.42 TCGA-BR-8487-01 6 24403213 24403213 G T MRS2 5'UTR 0.32 TCGA-BR-8487-01 6 24533872 24533872 C T ALDH5A1 Nonsense_Mutation p.R527* 0.37 TCGA-BR-8487-01 6 25261469 25261469 G A RP3-522P13.3 RNA 0.23 TCGA-BR-8487-01 6 25515900 25515900 C T LRRC16A Intron 0.53 TCGA-BR-8487-01 6 25529097 25529097 T C LRRC16A Silent p.G681G 0.25 TCGA-BR-8487-01 6 25861923 25861923 C - SLC17A3 Frame_Shift_Del p.G185Vfs*36 0.18 TCGA-BR-8487-01 6 26027254 26027254 T C HIST1H4B Missense_Mutation p.H76R 0.41 deleterious(0) probably_damaging(0.997) TCGA-BR-8487-01 6 26123766 26123766 T C HIST1H2BC Missense_Mutation p.T123A 0.30 deleterious_low_confidence(0.02) benign(0.013) TCGA-BR-8487-01 6 26123773 26123773 G A HIST1H2BC Silent p.T120T 0.44 TCGA-BR-8487-01 6 26124898 26124898 G A HIST1H2AC Intron 0.31 TCGA-BR-8487-01 6 26199429 26199429 C T HIST1H2AD Missense_Mutation p.A15T 0.35 tolerated_low_confidence(0.07) unknown(0) TCGA-BR-8487-01 6 26390383 26390383 A - BTN2A2 Frame_Shift_Del p.K294Rfs*56 0.30 TCGA-BR-8487-01 6 27420877 27420877 T C ZNF184 Missense_Mutation p.Q154R 0.38 tolerated(0.14) benign(0.003) TCGA-BR-8487-01 6 27782980 27782980 C T HIST1H2BM Silent p.T53T 0.35 TCGA-BR-8487-01 6 27783176 27783176 G A HIST1H2BM Missense_Mutation p.V119I 0.34 deleterious_low_confidence(0.04) benign(0.087) TCGA-BR-8487-01 6 27799300 27799300 A G HIST1H4K Silent p.S2S 0.24 TCGA-BR-8487-01 6 28097507 28097507 C T ZSCAN16 Missense_Mutation p.R276C 0.11 deleterious(0.05) benign(0.429) TCGA-BR-8487-01 6 28327560 28327560 G A ZKSCAN3 Missense_Mutation p.R66Q 0.35 tolerated(0.42) probably_damaging(0.986) TCGA-BR-8487-01 6 28502011 28502011 A - GPX5 3'UTR 0.42 TCGA-BR-8487-01 6 28543226 28543226 T C SCAND3 Missense_Mutation p.H419R 0.35 tolerated_low_confidence(0.13) benign(0.001) TCGA-BR-8487-01 6 29274602 29274602 A G OR14J1 Missense_Mutation p.I46V 0.38 tolerated(0.61) benign(0.02) TCGA-BR-8487-01 6 29455056 29455056 T - MAS1L Frame_Shift_Del p.K208Nfs*5 0.29 TCGA-BR-8487-01 6 29691536 29691536 C T HLA-F Missense_Mutation p.R56W 0.29 deleterious_low_confidence(0.01) probably_damaging(0.988) TCGA-BR-8487-01 6 30037057 30037057 C - PPP1R11 Frame_Shift_Del p.P120Lfs*55 0.09 TCGA-BR-8487-01 6 30154113 30154113 T C TRIM26 Missense_Mutation p.D387G 0.43 tolerated_low_confidence(0.36) unknown(0) TCGA-BR-8487-01 6 30514078 30514078 G A GNL1 Missense_Mutation p.S532F 0.64 deleterious(0.03) benign(0.195) TCGA-BR-8487-01 6 30653469 30653469 T C PPP1R18 Silent p.L109L 0.08 TCGA-BR-8487-01 6 30681463 30681463 T - MDC1 Frame_Shift_Del p.K183Nfs*9 0.30 TCGA-BR-8487-01 6 3154755 3154755 T C TUBB2A Missense_Mutation p.H227R 0.31 deleterious_low_confidence(0.01) benign(0.142) TCGA-BR-8487-01 6 3157684 3157684 A G TUBB2A Missense_Mutation p.V5A 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.581) TCGA-BR-8487-01 6 31593589 31593589 G A PRRC2A Silent p.P260P 0.47 TCGA-BR-8487-01 6 31600180 31600180 C T PRRC2A Nonsense_Mutation p.R1244* 0.40 TCGA-BR-8487-01 6 31657478 31657478 C - ABHD16A Frame_Shift_Del p.V321Cfs*22 0.14 TCGA-BR-8487-01 6 31745394 31745394 C A VARS Missense_Mutation p.A1258S 0.23 tolerated(0.54) benign(0.005) TCGA-BR-8487-01 6 31777884 31777884 G A HSPA1L Silent p.C622C 0.42 TCGA-BR-8487-01 6 31783543 31783543 G T HSPA1A Missense_Mutation p.A4S 0.26 tolerated_low_confidence(0.28) benign(0.115) TCGA-BR-8487-01 6 32057080 32057080 G - TNXB Frame_Shift_Del p.P812Lfs*28 0.37 TCGA-BR-8487-01 6 32116928 32116928 G A PRRT1 3'UTR 0.38 TCGA-BR-8487-01 6 32187376 32187376 G A NOTCH4 Silent p.C501C 0.33 TCGA-BR-8487-01 6 3225036 3225036 C T TUBB2B Silent p.T429T 0.33 TCGA-BR-8487-01 6 32410339 32410339 C T HLA-DRA Missense_Mutation p.T66M 0.08 deleterious(0.02) probably_damaging(0.998) TCGA-BR-8487-01 6 32803064 32803064 A C TAP2 Missense_Mutation p.L271R 0.30 deleterious(0) probably_damaging(0.936) TCGA-BR-8487-01 6 33152075 33152075 G - COL11A2 Intron 0.32 TCGA-BR-8487-01 6 33179049 33179049 C T RING1 Silent p.S190S 0.40 TCGA-BR-8487-01 6 33219710 33219711 - C VPS52 Frame_Shift_Ins p.L612Ffs*9 0.31 TCGA-BR-8487-01 6 33232675 33232675 T G VPS52 Missense_Mutation p.K428N 0.38 deleterious(0) possibly_damaging(0.775) TCGA-BR-8487-01 6 33272175 33272175 G - TAPBP Frame_Shift_Del p.P370Qfs*33 0.28 TCGA-BR-8487-01 6 33281127 33281127 C T TAPBP Silent p.A112A 0.21 TCGA-BR-8487-01 6 33393628 33393628 G A SYNGAP1 Silent p.L81L 0.35 TCGA-BR-8487-01 6 33411374 33411374 T G SYNGAP1 Silent p.T1015T 0.18 TCGA-BR-8487-01 6 34003743 34003743 C G GRM4 Missense_Mutation p.C715S 0.41 tolerated(0.31) possibly_damaging(0.585) TCGA-BR-8487-01 6 34004131 34004131 G A GRM4 Missense_Mutation p.P586S 0.40 deleterious(0.01) probably_damaging(0.998) TCGA-BR-8487-01 6 35288973 35288973 C T DEF6 Missense_Mutation p.P561L 0.06 tolerated(0.07) benign(0.008) TCGA-BR-8487-01 6 35393806 35393806 G A PPARD Missense_Mutation p.E426K 0.09 tolerated(0.1) possibly_damaging(0.81) TCGA-BR-8487-01 6 35543652 35543655 CTGT - FKBP5 Frame_Shift_Del p.D444Vfs*24 0.13 TCGA-BR-8487-01 6 36076318 36076318 C T MAPK14 3'UTR 0.36 TCGA-BR-8487-01 6 36298298 36298298 C T C6orf222 Missense_Mutation p.R57K 0.52 tolerated(0.17) possibly_damaging(0.567) TCGA-BR-8487-01 6 36569517 36569517 C T SRSF3 Missense_Mutation p.S138L 0.33 deleterious_low_confidence(0) benign(0.194) TCGA-BR-8487-01 6 37237385 37237385 T C TBC1D22B Silent p.Y24Y 0.33 TCGA-BR-8487-01 6 37250063 37250063 C - TBC1D22B Frame_Shift_Del p.P177Qfs*2 0.33 TCGA-BR-8487-01 6 37358618 37358618 C T RNF8 3'UTR 0.41 TCGA-BR-8487-01 6 37403507 37403507 A G CMTR1 Silent p.E34E 0.49 TCGA-BR-8487-01 6 37418080 37418080 T C CMTR1 Silent p.P166P 0.51 TCGA-BR-8487-01 6 38704868 38704868 C T DNAH8 Missense_Mutation p.A46V 0.38 benign(0.003) TCGA-BR-8487-01 6 394868 394868 G A IRF4 Silent p.P88P 0.29 TCGA-BR-8487-01 6 41773522 41773522 C T USP49 Silent p.A400A 0.52 TCGA-BR-8487-01 6 42016369 42016369 C - TAF8 5'Flank 0.33 TCGA-BR-8487-01 6 42211008 42211008 G A TRERF1 Missense_Mutation p.A946V 0.32 tolerated(0.08) possibly_damaging(0.483) TCGA-BR-8487-01 6 42235905 42235905 G A TRERF1 Missense_Mutation p.A475V 0.40 deleterious_low_confidence(0) possibly_damaging(0.483) TCGA-BR-8487-01 6 42832398 42832398 G T GLTSCR1L Missense_Mutation p.E818D 0.34 tolerated(1) benign(0.002) TCGA-BR-8487-01 6 42979154 42979154 A G PPP2R5D 3'UTR 0.44 TCGA-BR-8487-01 6 43109810 43109810 T C PTK7 Missense_Mutation p.L645P 0.32 tolerated(0.05) benign(0.008) TCGA-BR-8487-01 6 43146121 43146121 G A SRF Missense_Mutation p.A418T 0.41 deleterious(0.02) probably_damaging(0.956) TCGA-BR-8487-01 6 43192183 43192184 - G CUL9 3'UTR 0.31 TCGA-BR-8487-01 6 43323652 43323652 G A ZNF318 Silent p.L474L 0.37 TCGA-BR-8487-01 6 44143881 44143881 T C CAPN11 Missense_Mutation p.L303P 0.34 deleterious(0.04) probably_damaging(0.974) TCGA-BR-8487-01 6 44144341 44144341 C T CAPN11 Missense_Mutation p.A342V 0.30 deleterious(0.01) benign(0.155) TCGA-BR-8487-01 6 44144696 44144696 C T CAPN11 Missense_Mutation p.R400C 0.08 deleterious(0.03) probably_damaging(1) TCGA-BR-8487-01 6 44218837 44218837 G A HSP90AB1 Missense_Mutation p.R337H 0.39 tolerated(0.07) benign(0.233) TCGA-BR-8487-01 6 44371563 44371563 A - CDC5L Frame_Shift_Del p.R188Efs*9 0.32 TCGA-BR-8487-01 6 45515160 45515160 T - RUNX2 3'UTR 0.38 TCGA-BR-8487-01 6 47976384 47976384 G A PTCHD4 Missense_Mutation p.P298L 0.26 deleterious(0.04) probably_damaging(0.998) TCGA-BR-8487-01 6 50011439 50011439 T C DEFB112 Missense_Mutation p.Q64R 0.40 tolerated(0.26) benign(0.227) TCGA-BR-8487-01 6 50810889 50810889 G A TFAP2B Silent p.P389P 0.09 TCGA-BR-8487-01 6 52656537 52656537 A G GSTA1 3'UTR 0.50 TCGA-BR-8487-01 6 5404868 5404868 G A FARS2 Missense_Mutation p.V236M 0.30 tolerated(0.08) benign(0.056) TCGA-BR-8487-01 6 54735123 54735123 T C FAM83B Missense_Mutation p.W27R 0.38 tolerated(0.06) possibly_damaging(0.74) TCGA-BR-8487-01 6 55039264 55039264 T C HCRTR2 5'UTR 0.85 TCGA-BR-8487-01 6 55925815 55925815 A G COL21A1 Silent p.P742P 0.33 TCGA-BR-8487-01 6 56044553 56044553 C T COL21A1 Missense_Mutation p.A155T 0.18 deleterious(0) probably_damaging(0.986) TCGA-BR-8487-01 6 56330968 56330968 A G DST Missense_Mutation p.L4909P 0.29 probably_damaging(1) TCGA-BR-8487-01 6 56400091 56400091 C A DST Splice_Site p.X2968_splice 0.35 TCGA-BR-8487-01 6 56505385 56505385 G A DST Silent p.D145D 0.09 TCGA-BR-8487-01 6 56846680 56846681 AG - BEND6 Frame_Shift_Del p.E25Dfs*9 0.23 TCGA-BR-8487-01 6 6225036 6225036 A G F13A1 Missense_Mutation p.Y286H 0.46 tolerated(0.37) benign(0.077) TCGA-BR-8487-01 6 637811 637811 C T EXOC2 Missense_Mutation p.R3Q 0.40 tolerated_low_confidence(0.12) possibly_damaging(0.885) TCGA-BR-8487-01 6 70428963 70428963 A G LMBRD1 Missense_Mutation p.M216T 0.42 deleterious(0) probably_damaging(0.997) TCGA-BR-8487-01 6 70500277 70500277 A - LMBRD1 Frame_Shift_Del p.S53Lfs*2 0.20 TCGA-BR-8487-01 6 71185436 71185436 C T FAM135A Missense_Mutation p.S123L 0.41 tolerated(0.09) possibly_damaging(0.48) TCGA-BR-8487-01 6 7230609 7230609 C T RREB1 Silent p.G759G 0.41 TCGA-BR-8487-01 6 74117732 74117732 A - DDX43 Frame_Shift_Del p.G365Vfs*2 0.29 TCGA-BR-8487-01 6 74138519 74138519 A G MB21D1 Missense_Mutation p.L377P 0.23 deleterious(0) probably_damaging(0.997) TCGA-BR-8487-01 6 7579924 7579924 G T DSP Missense_Mutation p.K1167N 0.23 probably_damaging(0.996) TCGA-BR-8487-01 6 75851781 75851781 C - COL12A1 Frame_Shift_Del p.E1642Sfs*5 0.27 TCGA-BR-8487-01 6 76405543 76405543 A G SENP6 Missense_Mutation p.K700R 0.32 tolerated(0.08) possibly_damaging(0.524) TCGA-BR-8487-01 6 76618318 76618318 G A MYO6 Missense_Mutation p.R1129H 0.32 deleterious(0.02) probably_damaging(0.995) TCGA-BR-8487-01 6 79787818 79787818 C T PHIP 5'UTR 0.33 TCGA-BR-8487-01 6 83839938 83839938 T C DOPEY1 Missense_Mutation p.L813P 0.22 tolerated(0.08) probably_damaging(0.999) TCGA-BR-8487-01 6 83839961 83839961 A G DOPEY1 Missense_Mutation p.T821A 0.24 deleterious(0.03) probably_damaging(0.995) TCGA-BR-8487-01 6 84603290 84603290 A C CYB5R4 Missense_Mutation p.E93D 0.43 tolerated(0.1) benign(0.327) TCGA-BR-8487-01 6 84834752 84834752 G A KIAA1009 3'UTR 0.45 TCGA-BR-8487-01 6 86324832 86324832 C - SYNCRIP Frame_Shift_Del p.G505Vfs*57 0.17 TCGA-BR-8487-01 6 87970368 87970368 T C ZNF292 Silent p.L2341L 0.48 TCGA-BR-8487-01 6 87970811 87970811 T C ZNF292 Silent p.F2488F 0.50 TCGA-BR-8487-01 6 87970961 87970961 T - ZNF292 Frame_Shift_Del p.N2538Kfs*21 0.22 TCGA-BR-8487-01 6 88173833 88173833 T C C6ORF165 Silent p.T578T 0.50 TCGA-BR-8487-01 6 89978860 89978860 G A GABRR2 Missense_Mutation p.R128W 0.37 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 6 90340549 90340549 T - ANKRD6 Frame_Shift_Del p.F672Lfs*34 0.29 TCGA-BR-8487-01 6 90395561 90395561 G A MDN1 Nonsense_Mutation p.Q3902* 0.37 TCGA-BR-8487-01 6 90399785 90399785 G A MDN1 Silent p.G3609G 0.43 TCGA-BR-8487-01 6 90438695 90438695 C A MDN1 Missense_Mutation p.K1768N 0.41 probably_damaging(0.965) TCGA-BR-8487-01 6 90660304 90660304 G A BACH2 Silent p.C507C 0.40 TCGA-BR-8487-01 6 97052743 97052743 T C FHL5 Missense_Mutation p.C93R 0.45 deleterious(0) probably_damaging(0.977) TCGA-BR-8487-01 6 99849343 99849343 T - PNISR Frame_Shift_Del p.E498Sfs*85 0.29 TCGA-BR-8487-01 6 99849431 99849431 A G PNISR Missense_Mutation p.L468P 0.31 tolerated(0.29) benign(0.013) TCGA-BR-8487-01 7 100187651 100187652 - G FBXO24 Frame_Shift_Ins p.K71Efs*118 0.12 TCGA-BR-8487-01 7 100192729 100192729 G - FBXO24 Frame_Shift_Del p.G359Efs*69 0.18 TCGA-BR-8487-01 7 100244182 100244182 T C ACTL6B Missense_Mutation p.T369A 0.26 tolerated(0.32) benign(0.068) TCGA-BR-8487-01 7 100280085 100280085 G A GIGYF1 Missense_Mutation p.S874L 0.29 tolerated(0.07) possibly_damaging(0.85) TCGA-BR-8487-01 7 100304461 100304461 A - POP7 Frame_Shift_Del p.N4Tfs*38 0.19 TCGA-BR-8487-01 7 100350373 100350373 C T ZAN Missense_Mutation p.T882M 0.23 unknown(0) TCGA-BR-8487-01 7 100417381 100417381 T C EPHB4 Silent p.R365R 0.32 TCGA-BR-8487-01 7 100482099 100482099 C T SRRT Missense_Mutation p.R290W 0.34 deleterious(0.01) possibly_damaging(0.689) TCGA-BR-8487-01 7 100806877 100806877 C A VGF Missense_Mutation p.E416D 0.23 deleterious_low_confidence(0.01) unknown(0) TCGA-BR-8487-01 7 100867096 100867096 G A ZNHIT1 Missense_Mutation p.R139H 0.08 deleterious(0.02) possibly_damaging(0.621) TCGA-BR-8487-01 7 101923346 101923346 C T CUX1 Silent p.D564D 0.30 TCGA-BR-8487-01 7 101957767 101957767 G - SH2B2 Frame_Shift_Del p.R474Gfs*7 0.21 TCGA-BR-8487-01 7 102107885 102107885 C A LRWD1 Missense_Mutation p.R178S 0.27 tolerated(0.42) benign(0.245) TCGA-BR-8487-01 7 102574541 102574541 C A LRRC17 Missense_Mutation p.H61N 0.15 tolerated(0.62) benign(0.002) TCGA-BR-8487-01 7 102669858 102669858 G A FBXL13 Missense_Mutation p.P3L 0.35 deleterious(0) probably_damaging(0.976) TCGA-BR-8487-01 7 103113235 103113235 A - RELN 3'UTR 0.28 TCGA-BR-8487-01 7 1037311 1037311 G - C7orf50 Frame_Shift_Del p.L179Cfs*136 0.22 TCGA-BR-8487-01 7 104752725 104752725 G A KMT2E Missense_Mutation p.A1508T 0.26 tolerated_low_confidence(0.13) benign(0.066) TCGA-BR-8487-01 7 106800140 106800140 T - PRKAR2B 3'UTR 0.22 TCGA-BR-8487-01 7 107417105 107417105 T C SLC26A3 Missense_Mutation p.K521E 0.08 tolerated(0.07) benign(0.437) TCGA-BR-8487-01 7 107642156 107642156 G A LAMB1 Silent p.R20R 0.36 TCGA-BR-8487-01 7 107880468 107880468 G A NRCAM Missense_Mutation p.A14V 0.32 tolerated(0.56) benign(0.003) TCGA-BR-8487-01 7 1097807 1097807 C T GPR146 Missense_Mutation p.P219L 0.41 tolerated(0.09) possibly_damaging(0.641) TCGA-BR-8487-01 7 110763397 110763397 T C LRRN3 Missense_Mutation p.L190P 0.24 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 7 111368610 111368610 G A DOCK4 Missense_Mutation p.A1874V 0.35 tolerated_low_confidence(0.23) benign(0) TCGA-BR-8487-01 7 112415228 112415228 T C TMEM168 Intron 0.19 TCGA-BR-8487-01 7 112424911 112424911 T C TMEM168 5'UTR 0.31 TCGA-BR-8487-01 7 1131797 1131797 G A GPER1 Missense_Mutation p.V145I 0.30 tolerated(1) benign(0.015) TCGA-BR-8487-01 7 114655773 114655773 G A MDFIC Silent p.L284L 0.16 TCGA-BR-8487-01 7 115581855 115581855 A G TFEC Intron 0.22 TCGA-BR-8487-01 7 116199372 116199372 T - CAV1 3'UTR 0.31 TCGA-BR-8487-01 7 116546325 116546326 - A CAPZA2 Frame_Shift_Ins p.I148Nfs*53 0.20 TCGA-BR-8487-01 7 11676578 11676578 G A THSD7A Silent p.G67G 0.27 TCGA-BR-8487-01 7 117199603 117199603 A C CFTR Missense_Mutation p.Q493P 0.38 deleterious(0) probably_damaging(0.999) TCGA-BR-8487-01 7 117234990 117234990 T - CFTR Frame_Shift_Del p.F834Lfs*10 0.12 TCGA-BR-8487-01 7 11871469 11871469 A G THSD7A Missense_Mutation p.L35P 0.22 tolerated_low_confidence(0.13) unknown(0) TCGA-BR-8487-01 7 119915475 119915475 T C KCND2 Silent p.S263S 0.29 TCGA-BR-8487-01 7 119915782 119915782 G A KCND2 Missense_Mutation p.V366I 0.23 tolerated(0.06) probably_damaging(0.999) TCGA-BR-8487-01 7 120455811 120455811 C T TSPAN12 Missense_Mutation p.G111D 0.26 deleterious(0) probably_damaging(0.928) TCGA-BR-8487-01 7 120911387 120911388 - A CPED1 Frame_Shift_Ins p.H927Tfs*4 0.32 TCGA-BR-8487-01 7 121943770 121943771 - T FEZF1 Frame_Shift_Ins p.I241Nfs*14 0.27 TCGA-BR-8487-01 7 122338733 122338733 T C RNF133 Silent p.G80G 0.36 TCGA-BR-8487-01 7 123269126 123269126 A G ASB15 Missense_Mutation p.N360D 0.27 deleterious(0) possibly_damaging(0.803) TCGA-BR-8487-01 7 123346380 123346380 T - WASL Frame_Shift_Del p.K129Nfs*36 0.17 TCGA-BR-8487-01 7 123517154 123517154 C A HYAL4 Nonsense_Mutation p.S464* 0.28 TCGA-BR-8487-01 7 124387107 124387107 G A GPR37 Silent p.Y438Y 0.27 TCGA-BR-8487-01 7 127668603 127668603 T - LRRC4 3'UTR 0.43 TCGA-BR-8487-01 7 127950948 127950948 T C RBM28 Missense_Mutation p.T728A 0.30 tolerated(0.81) benign(0) TCGA-BR-8487-01 7 128040570 128040570 C T IMPDH1 Silent p.T201T 0.15 TCGA-BR-8487-01 7 128356940 128356940 T C FAM71F1 Missense_Mutation p.V108A 0.15 tolerated(0.09) benign(0.405) TCGA-BR-8487-01 7 128441353 128441353 C T CCDC136 Missense_Mutation p.R154W 0.21 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 7 128484941 128484941 C A FLNC Missense_Mutation p.P1141H 0.25 deleterious(0) probably_damaging(0.99) TCGA-BR-8487-01 7 128587396 128587396 C T IRF5 Silent p.P198P 0.34 TCGA-BR-8487-01 7 128845470 128845470 G A SMO Nonsense_Mutation p.W256* 0.29 TCGA-BR-8487-01 7 129096388 129096388 C T STRIP2 Missense_Mutation p.R315C 0.24 deleterious(0) probably_damaging(0.988) TCGA-BR-8487-01 7 130025744 130025744 G A CPA1 Missense_Mutation p.G351D 0.29 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 7 131189178 131189178 C A PODXL Missense_Mutation p.Q523H 0.20 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 7 131195724 131195724 C T PODXL Missense_Mutation p.R190Q 0.28 tolerated(0.62) benign(0.009) TCGA-BR-8487-01 7 131887472 131887472 G A PLXNA4 Missense_Mutation p.A840V 0.27 tolerated(0.13) benign(0.014) TCGA-BR-8487-01 7 132174163 132174163 C T PLXNA4 Missense_Mutation p.R420H 0.15 deleterious(0.01) possibly_damaging(0.883) TCGA-BR-8487-01 7 134346399 134346399 C T BPGM Missense_Mutation p.A47V 0.33 deleterious(0.01) benign(0.041) TCGA-BR-8487-01 7 134625972 134625972 A G CALD1 Missense_Mutation p.T506A 0.20 tolerated(0.19) unknown(0) TCGA-BR-8487-01 7 134849267 134849267 T C TMEM140 Missense_Mutation p.I25T 0.27 deleterious(0.03) benign(0.39) TCGA-BR-8487-01 7 134849483 134849483 C - TMEM140 Frame_Shift_Del p.Q99Sfs*5 0.19 TCGA-BR-8487-01 7 135333151 135333151 G A NUP205 Splice_Site p.X1963_splice 0.22 TCGA-BR-8487-01 7 135370392 135370392 A G SLC13A4 Missense_Mutation p.S495P 0.24 tolerated(1) benign(0.006) TCGA-BR-8487-01 7 136938376 136938377 - T PTN Frame_Shift_Ins p.V42Sfs*5 0.15 TCGA-BR-8487-01 7 137790156 137790156 A G AKR1D1 Missense_Mutation p.H187R 0.25 deleterious(0) benign(0.388) TCGA-BR-8487-01 7 138269744 138269744 A - TRIM24 3'UTR 0.24 TCGA-BR-8487-01 7 138745776 138745776 A G ZC3HAV1 Intron 0.29 TCGA-BR-8487-01 7 138768595 138768595 C T ZC3HAV1 Missense_Mutation p.D210N 0.25 deleterious(0.02) probably_damaging(0.959) TCGA-BR-8487-01 7 139168208 139168208 C A KLRG2 Missense_Mutation p.G61C 0.11 deleterious_low_confidence(0) possibly_damaging(0.823) TCGA-BR-8487-01 7 139416624 139416624 G T HIPK2 Silent p.S70S 0.26 TCGA-BR-8487-01 7 139719836 139719836 G A TBXAS1 Silent p.Q560Q 0.27 TCGA-BR-8487-01 7 139741630 139741630 G T PARP12 Nonsense_Mutation p.C332* 0.26 TCGA-BR-8487-01 7 140221778 140221778 G A DENND2A Missense_Mutation p.R930W 0.38 deleterious(0.02) probably_damaging(0.998) TCGA-BR-8487-01 7 140285507 140285507 G A DENND2A Missense_Mutation p.P376L 0.26 tolerated(0.12) benign(0.009) TCGA-BR-8487-01 7 140454015 140454015 T C BRAF Silent p.S571S 0.26 TCGA-BR-8487-01 7 141754637 141754637 A G MGAM Silent p.Q1081Q 0.29 TCGA-BR-8487-01 7 142028548 142028548 G A TRBV6-1 Silent p.S94S 0.30 TCGA-BR-8487-01 7 142480049 142480049 G A PRSS3P2 RNA 0.19 TCGA-BR-8487-01 7 143097047 143097047 G A EPHA1 Missense_Mutation p.R178C 0.43 deleterious(0) possibly_damaging(0.881) TCGA-BR-8487-01 7 143573685 143573685 G A FAM115A Missense_Mutation p.A6V 0.36 deleterious(0.05) benign(0.202) TCGA-BR-8487-01 7 143771510 143771510 G A OR2A25 Silent p.A66A 0.25 TCGA-BR-8487-01 7 143793059 143793059 C A OR2A12 Missense_Mutation p.L287I 0.24 tolerated(0.09) benign(0.125) TCGA-BR-8487-01 7 1474191 1474191 C T MICALL2 3'UTR 0.21 TCGA-BR-8487-01 7 148112638 148112638 C G CNTNAP2 Missense_Mutation p.A1309G 0.27 tolerated(0.17) benign(0.019) TCGA-BR-8487-01 7 148451198 148451198 C T CUL1 Nonsense_Mutation p.R91* 0.09 TCGA-BR-8487-01 7 148701253 148701255 TTG - PDIA4 In_Frame_Del p.N523del 0.23 TCGA-BR-8487-01 7 148769470 148769470 G A ZNF786 Missense_Mutation p.P132S 0.31 tolerated(0.78) benign(0.016) TCGA-BR-8487-01 7 1488346 1488346 C T MICALL2 Missense_Mutation p.E82K 0.24 deleterious(0) probably_damaging(0.955) TCGA-BR-8487-01 7 148875815 148875817 CTC - ZNF398 In_Frame_Del p.P286del 0.23 TCGA-BR-8487-01 7 148876153 148876153 C - ZNF398 Frame_Shift_Del p.T399Pfs*68 0.21 TCGA-BR-8487-01 7 148895829 148895829 G - ZNF282 Frame_Shift_Del p.E192Rfs*7 0.21 TCGA-BR-8487-01 7 148979127 148979127 T C ZNF783 Missense_Mutation p.F445S 0.23 deleterious(0) probably_damaging(0.997) TCGA-BR-8487-01 7 148979206 148979206 C T ZNF783 Silent p.C471C 0.25 TCGA-BR-8487-01 7 149477454 149477454 C T SSPO RNA 0.35 TCGA-BR-8487-01 7 149497409 149497409 G A SSPO RNA 0.36 TCGA-BR-8487-01 7 149500066 149500066 G T SSPO RNA 0.35 TCGA-BR-8487-01 7 149508059 149508059 C - SSPO RNA 0.23 TCGA-BR-8487-01 7 150069776 150069776 C T REPIN1 Silent p.T539T 0.28 TCGA-BR-8487-01 7 150416134 150416134 G T GIMAP1 5'UTR 0.19 TCGA-BR-8487-01 7 150554719 150554719 C T AOC1 Silent p.P387P 0.21 TCGA-BR-8487-01 7 150555029 150555029 A G AOC1 Missense_Mutation p.T491A 0.23 tolerated(0.21) possibly_damaging(0.828) TCGA-BR-8487-01 7 150558050 150558050 C T AOC1 Missense_Mutation p.T670M 0.21 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 7 150656686 150656686 C G KCNH2 Missense_Mutation p.G149A 0.20 tolerated(0.77) benign(0.001) TCGA-BR-8487-01 7 150674958 150674958 A G KCNH2 Missense_Mutation p.L15P 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-BR-8487-01 7 150721263 150721263 G A ATG9B Missense_Mutation p.A83V 0.23 tolerated_low_confidence(0.1) benign(0.01) TCGA-BR-8487-01 7 150737962 150737962 C T ABCB8 Missense_Mutation p.T479M 0.26 tolerated(0.16) benign(0.063) TCGA-BR-8487-01 7 150761736 150761736 C A SLC4A2 Missense_Mutation p.P114Q 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.515) TCGA-BR-8487-01 7 150775020 150775020 G A FASTK Missense_Mutation p.P329S 0.21 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 7 150775740 150775740 T C FASTK Missense_Mutation p.Q245R 0.32 deleterious(0.02) benign(0.005) TCGA-BR-8487-01 7 150776883 150776883 T C FASTK Missense_Mutation p.D70G 0.21 deleterious_low_confidence(0.01) benign(0.05) TCGA-BR-8487-01 7 150839592 150839592 G A AGAP3 Missense_Mutation p.R715H 0.23 deleterious(0) probably_damaging(0.989) TCGA-BR-8487-01 7 150873338 150873338 G T ASB10 Missense_Mutation p.P422H 0.09 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 7 150937242 150937242 G A SMARCD3 Silent p.L377L 0.30 TCGA-BR-8487-01 7 151064135 151064135 A - NUB1 Frame_Shift_Del p.K330Nfs*2 0.13 TCGA-BR-8487-01 7 154561143 154561143 A G DPP6 Silent p.T300T 0.24 TCGA-BR-8487-01 7 154595578 154595578 A G DPP6 Missense_Mutation p.N471S 0.18 tolerated(0.27) benign(0.013) TCGA-BR-8487-01 7 155093391 155093391 C T INSIG1 Silent p.H176H 0.27 TCGA-BR-8487-01 7 156451251 156451251 T C RNF32 Missense_Mutation p.F224S 0.36 deleterious(0) benign(0.27) TCGA-BR-8487-01 7 156476761 156476761 G A LMBR1 3'UTR 0.30 TCGA-BR-8487-01 7 18625006 18625006 G A HDAC9 Missense_Mutation p.R42H 0.30 deleterious(0.02) probably_damaging(0.99) TCGA-BR-8487-01 7 20824196 20824196 G A SP8 Missense_Mutation p.R414C 0.26 deleterious(0) probably_damaging(0.996) TCGA-BR-8487-01 7 21657286 21657286 G A DNAH11 Missense_Mutation p.G1387D 0.33 benign(0.307) TCGA-BR-8487-01 7 21742330 21742330 T A DNAH11 Missense_Mutation p.D2068E 0.35 probably_damaging(0.961) TCGA-BR-8487-01 7 21945971 21945971 A G CDCA7L Missense_Mutation p.F286S 0.06 tolerated(0.05) benign(0.065) TCGA-BR-8487-01 7 2284328 2284330 AAG - NUDT1 In_Frame_Del p.E64del 0.43 TCGA-BR-8487-01 7 2297144 2297144 C T SNX8 Silent p.L330L 0.22 TCGA-BR-8487-01 7 2311527 2311527 G A SNX8 Silent p.S166S 0.27 TCGA-BR-8487-01 7 23729040 23729040 A T FAM221A Missense_Mutation p.D131V 0.25 deleterious(0.01) possibly_damaging(0.807) TCGA-BR-8487-01 7 25264737 25264737 T C NPVF 3'UTR 0.21 TCGA-BR-8487-01 7 2583333 2583333 A G BRAT1 Missense_Mutation p.W232R 0.22 deleterious(0) probably_damaging(0.987) TCGA-BR-8487-01 7 2701420 2701420 G A TTYH3 3'UTR 0.27 TCGA-BR-8487-01 7 28997640 28997640 C T AC005013.5 Intron 0.30 TCGA-BR-8487-01 7 2985499 2985499 T C CARD11 Silent p.K104K 0.25 TCGA-BR-8487-01 7 30094482 30094482 G A PLEKHA8 Splice_Site p.X318_splice 0.23 TCGA-BR-8487-01 7 30795070 30795070 G A INMT Missense_Mutation p.R132Q 0.16 tolerated(0.09) benign(0.321) TCGA-BR-8487-01 7 30825421 30825421 C T FAM188B Missense_Mutation p.P159L 0.28 tolerated(0.33) benign(0.1) TCGA-BR-8487-01 7 31918629 31918629 C A PDE1C Missense_Mutation p.Q195H 0.14 deleterious(0) probably_damaging(0.996) TCGA-BR-8487-01 7 34097736 34097736 T C BMPER Silent p.C331C 0.33 TCGA-BR-8487-01 7 34118552 34118552 T C BMPER Missense_Mutation p.Y388H 0.35 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 7 36194750 36194750 G A EEPD1 Missense_Mutation p.V273M 0.15 tolerated(0.08) benign(0.041) TCGA-BR-8487-01 7 38389110 38389110 T C TRGV5 Missense_Mutation p.Y67C 0.33 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 7 38402560 38402560 A C TRGV2 Missense_Mutation p.Y87D 0.09 tolerated(0.44) benign(0) TCGA-BR-8487-01 7 38783072 38783072 G A VPS41 Silent p.I684I 0.35 TCGA-BR-8487-01 7 39500290 39500290 C T POU6F2 Missense_Mutation p.A516V 0.21 deleterious(0.04) unknown(0) TCGA-BR-8487-01 7 39504019 39504019 C T POU6F2 Missense_Mutation p.P604S 0.09 deleterious(0.04) unknown(0) TCGA-BR-8487-01 7 40134449 40134449 C T CDK13 Missense_Mutation p.P1470L 0.37 tolerated_low_confidence(0.06) probably_damaging(0.998) TCGA-BR-8487-01 7 4153057 4153057 C T SDK1 Missense_Mutation p.R1191W 0.17 tolerated(0.88) benign(0.042) TCGA-BR-8487-01 7 4169577 4169577 G T SDK1 Missense_Mutation p.R1326M 0.22 tolerated(0.09) possibly_damaging(0.498) TCGA-BR-8487-01 7 42005573 42005573 G - GLI3 Frame_Shift_Del p.P1033Rfs*46 0.30 TCGA-BR-8487-01 7 43687183 43687183 G A COA1 Silent p.H22H 0.32 TCGA-BR-8487-01 7 43916483 43916483 C T URGCP Missense_Mutation p.R860Q 0.32 tolerated(0.1) benign(0.1) TCGA-BR-8487-01 7 44100420 44100420 G T DBNL Missense_Mutation p.G409C 0.27 deleterious(0.01) possibly_damaging(0.907) TCGA-BR-8487-01 7 44104740 44104740 T C PGAM2 Missense_Mutation p.H130R 0.22 deleterious(0.05) probably_damaging(0.997) TCGA-BR-8487-01 7 44120414 44120414 G - POLM Frame_Shift_Del p.P97Qfs*6 0.19 TCGA-BR-8487-01 7 44150385 44150385 T C AEBP1 Missense_Mutation p.Y488H 0.27 deleterious(0.03) probably_damaging(0.972) TCGA-BR-8487-01 7 44151520 44151520 G A AEBP1 Silent p.L636L 0.31 TCGA-BR-8487-01 7 44579394 44579394 C T NPC1L1 Missense_Mutation p.R201H 0.07 deleterious(0.05) benign(0.049) TCGA-BR-8487-01 7 44612258 44612258 G A DDX56 Missense_Mutation p.R157C 0.25 deleterious(0.01) benign(0.009) TCGA-BR-8487-01 7 44736535 44736535 T C OGDH Silent p.T641T 0.29 TCGA-BR-8487-01 7 44737841 44737841 C T OGDH Silent p.N803N 0.17 TCGA-BR-8487-01 7 44924609 44924609 G A PURB Silent p.G113G 0.20 TCGA-BR-8487-01 7 45142092 45142092 T C TBRG4 Splice_Site p.X393_splice 0.36 TCGA-BR-8487-01 7 45614583 45614583 G T ADCY1 Silent p.R147R 0.17 TCGA-BR-8487-01 7 45753551 45753551 C A ADCY1 Missense_Mutation p.P1106Q 0.33 tolerated_low_confidence(0.21) benign(0.045) TCGA-BR-8487-01 7 45928278 45928278 C T IGFBP1 Silent p.V9V 0.27 TCGA-BR-8487-01 7 47408456 47408456 A G TNS3 Missense_Mutation p.V596A 0.26 tolerated(0.08) probably_damaging(0.984) TCGA-BR-8487-01 7 47408585 47408585 C T TNS3 Missense_Mutation p.R553Q 0.29 tolerated(0.17) benign(0.004) TCGA-BR-8487-01 7 47409215 47409215 A G TNS3 Missense_Mutation p.L343P 0.20 tolerated(0.39) benign(0.005) TCGA-BR-8487-01 7 47440452 47440452 C T TNS3 Silent p.Q261Q 0.25 TCGA-BR-8487-01 7 47467920 47467920 C T TNS3 Missense_Mutation p.V127I 0.09 tolerated(0.98) benign(0.066) TCGA-BR-8487-01 7 47694914 47694914 G A C7orf65 Missense_Mutation p.R13Q 0.25 tolerated_low_confidence(0.12) benign(0) TCGA-BR-8487-01 7 47840378 47840378 C T PKD1L1 Missense_Mutation p.G2688R 0.30 tolerated(0.62) benign(0.003) TCGA-BR-8487-01 7 47944043 47944043 G T PKD1L1 Silent p.A621A 0.27 TCGA-BR-8487-01 7 47968882 47968882 C T PKD1L1 Missense_Mutation p.G327R 0.29 deleterious(0.02) benign(0.195) TCGA-BR-8487-01 7 48026899 48026899 T C SUN3 3'UTR 0.25 TCGA-BR-8487-01 7 4823046 4823046 G A AP5Z1 Missense_Mutation p.V156I 0.34 tolerated(0.36) benign(0.007) TCGA-BR-8487-01 7 4824582 4824582 C T AP5Z1 Silent p.S278S 0.24 TCGA-BR-8487-01 7 4830499 4830499 A G AP5Z1 Missense_Mutation p.S712G 0.19 deleterious(0.01) probably_damaging(0.991) TCGA-BR-8487-01 7 48313562 48313562 T C ABCA13 Silent p.S1433S 0.25 TCGA-BR-8487-01 7 4839270 4839270 C T RADIL Missense_Mutation p.G1038D 0.29 tolerated(1) benign(0.005) TCGA-BR-8487-01 7 48412054 48412054 T C ABCA13 Missense_Mutation p.V3698A 0.22 probably_damaging(0.998) TCGA-BR-8487-01 7 4841381 4841381 C A RADIL Silent p.G915G 0.19 TCGA-BR-8487-01 7 4841484 4841484 G - RADIL Frame_Shift_Del p.P881Lfs*110 0.29 TCGA-BR-8487-01 7 5036796 5036796 A G RNF216P1 RNA 0.18 TCGA-BR-8487-01 7 50514009 50514009 T - FIGNL1 Frame_Shift_Del p.K326Sfs*3 0.16 TCGA-BR-8487-01 7 51097191 51097191 G A COBL Silent p.G534G 0.28 TCGA-BR-8487-01 7 5352149 5352149 G A TNRC18 Silent p.F2791F 0.18 TCGA-BR-8487-01 7 5410796 5410796 C T TNRC18 Silent p.P1143P 0.18 TCGA-BR-8487-01 7 55270249 55270249 C T EGFR Nonsense_Mutation p.R1068* 0.24 TCGA-BR-8487-01 7 55912280 55912280 C T SEPT14 Missense_Mutation p.V103I 0.28 tolerated(0.14) benign(0.186) TCGA-BR-8487-01 7 56128577 56128577 G A CCT6A Missense_Mutation p.G431S 0.24 deleterious(0.01) possibly_damaging(0.725) TCGA-BR-8487-01 7 57522188 57522188 T C ZNF716 Missense_Mutation p.I21T 0.18 deleterious(0) benign(0.23) TCGA-BR-8487-01 7 64168001 64168001 A G ZNF107 Missense_Mutation p.Y440C 0.32 deleterious(0.01) probably_damaging(1) TCGA-BR-8487-01 7 64292082 64292082 A G ZNF138 Silent p.S128S 0.26 TCGA-BR-8487-01 7 6449476 6449476 C T DAGLB Missense_Mutation p.V671M 0.32 tolerated_low_confidence(0.21) benign(0.005) TCGA-BR-8487-01 7 65220792 65220792 A G SNORA22 3'Flank 0.24 TCGA-BR-8487-01 7 65441107 65441107 G A GUSB Silent p.V269V 0.30 TCGA-BR-8487-01 7 6731628 6731628 A G ZNF12 Silent p.H315H 0.08 TCGA-BR-8487-01 7 6791111 6791111 A G RSPH10B2 5'Flank 0.26 TCGA-BR-8487-01 7 70256035 70256035 C T AUTS2 3'UTR 0.17 TCGA-BR-8487-01 7 720281 720281 G - PRKAR1B Frame_Shift_Del p.P87Rfs*5 0.27 TCGA-BR-8487-01 7 72281143 72281143 A G TYW1B Missense_Mutation p.F116L 0.31 tolerated(0.1) probably_damaging(0.993) TCGA-BR-8487-01 7 72413424 72413424 G A POM121 Silent p.P699P 0.17 TCGA-BR-8487-01 7 72648734 72648734 G - NCF1B RNA 0.23 TCGA-BR-8487-01 7 72657672 72657672 C T GTF2IRD2P1 RNA 0.27 TCGA-BR-8487-01 7 72738501 72738501 C T TRIM50 Silent p.P95P 0.33 TCGA-BR-8487-01 7 73010556 73010556 C T MLXIPL Missense_Mutation p.R662H 0.26 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 7 73097068 73097068 T G DNAJC30 3'UTR 0.24 TCGA-BR-8487-01 7 73097222 73097222 G A DNAJC30 Missense_Mutation p.R178W 0.44 deleterious(0) probably_damaging(0.999) TCGA-BR-8487-01 7 73457318 73457318 T C ELN Silent p.A110A 0.14 TCGA-BR-8487-01 7 73461040 73461040 G - ELN Frame_Shift_Del p.G197Dfs*126 0.20 TCGA-BR-8487-01 7 73770846 73770846 A G CLIP2 Missense_Mutation p.M304V 0.29 tolerated(0.2) benign(0.018) TCGA-BR-8487-01 7 74564095 74564095 A G GTF2IRD2B Silent p.V614V 0.24 TCGA-BR-8487-01 7 75045612 75045612 G A POM121C 3'Flank 0.31 TCGA-BR-8487-01 7 75182750 75182750 A G HIP1 Splice_Site p.X765_splice 0.33 TCGA-BR-8487-01 7 75203099 75203099 A G HIP1 Missense_Mutation p.Y238H 0.32 deleterious(0) probably_damaging(0.997) TCGA-BR-8487-01 7 75608787 75608787 T C POR Missense_Mutation p.F86L 0.29 tolerated(0.12) benign(0.186) TCGA-BR-8487-01 7 75615500 75615500 G A POR Silent p.K613K 0.30 TCGA-BR-8487-01 7 76109916 76109916 C A DTX2 Silent p.T30T 0.19 TCGA-BR-8487-01 7 76134880 76134880 G A DTX2 Missense_Mutation p.A611T 0.39 deleterious(0) probably_damaging(0.988) TCGA-BR-8487-01 7 76610442 76610442 C T UPK3B Intron 0.14 TCGA-BR-8487-01 7 76942814 76942814 C T GSAP Silent p.R754R 0.29 TCGA-BR-8487-01 7 77423301 77423301 A - TMEM60 Frame_Shift_Del p.F130Lfs*2 0.21 TCGA-BR-8487-01 7 77756556 77756556 G A MAGI2 Silent p.P1127P 0.28 TCGA-BR-8487-01 7 77762325 77762325 C T MAGI2 Silent p.A1028A 0.26 TCGA-BR-8487-01 7 81598282 81598282 T C CACNA2D1 Silent p.G772G 0.35 TCGA-BR-8487-01 7 82595415 82595415 T C PCLO Missense_Mutation p.E1230G 0.25 unknown(0) TCGA-BR-8487-01 7 82595608 82595608 T - PCLO Frame_Shift_Del p.T1166Rfs*11 0.19 TCGA-BR-8487-01 7 82784067 82784067 C T PCLO Silent p.T630T 0.22 TCGA-BR-8487-01 7 83047757 83047757 T C SEMA3E Missense_Mutation p.R167G 0.42 deleterious(0) possibly_damaging(0.84) TCGA-BR-8487-01 7 87258157 87258157 G - RUNDC3B Frame_Shift_Del p.G8Afs*2 0.30 TCGA-BR-8487-01 7 87536669 87536670 - A DBF4 Frame_Shift_Ins p.L409Afs*14 0.25 TCGA-BR-8487-01 7 90895652 90895652 C T FZD1 Missense_Mutation p.A486V 0.24 deleterious(0.04) benign(0.298) TCGA-BR-8487-01 7 91603085 91603085 A - AKAP9 Frame_Shift_Del p.K39Rfs*17 0.22 TCGA-BR-8487-01 7 91729181 91729181 A G AKAP9 Missense_Mutation p.N3632D 0.35 benign(0.021) TCGA-BR-8487-01 7 91972386 91972386 A G ANKIB1 Missense_Mutation p.N279S 0.21 tolerated(0.58) benign(0.007) TCGA-BR-8487-01 7 92883210 92883210 C T CCDC132 Missense_Mutation p.A88V 0.21 tolerated(0.18) benign(0.052) TCGA-BR-8487-01 7 93519623 93519623 C T TFPI2 Missense_Mutation p.A33T 0.27 tolerated(0.4) benign(0.039) TCGA-BR-8487-01 7 94184854 94184854 C A CASD1 Silent p.I726I 0.35 TCGA-BR-8487-01 7 94293284 94293284 G A PEG10 Missense_Mutation p.R139H 0.05 deleterious(0.02) possibly_damaging(0.696) TCGA-BR-8487-01 7 95751286 95751286 T C SLC25A13 Missense_Mutation p.T540A 0.27 deleterious(0) probably_damaging(0.994) TCGA-BR-8487-01 7 95800793 95800793 T C SLC25A13 Missense_Mutation p.I408M 0.23 deleterious(0) possibly_damaging(0.883) TCGA-BR-8487-01 7 95951306 95951306 A G SLC25A13 5'UTR 0.38 TCGA-BR-8487-01 7 96318150 96318150 T - SHFM1 3'UTR 0.26 TCGA-BR-8487-01 7 97482432 97482432 A G ASNS Silent p.D472D 0.22 TCGA-BR-8487-01 7 97933665 97933665 C T BAIAP2L1 Missense_Mutation p.S422N 0.22 deleterious(0.05) probably_damaging(0.999) TCGA-BR-8487-01 7 98460759 98460759 C T TMEM130 Missense_Mutation p.C117Y 0.20 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 7 98460916 98460916 C T TMEM130 Missense_Mutation p.A65T 0.21 tolerated(0.89) benign(0.002) TCGA-BR-8487-01 7 98495397 98495397 G A TRRAP Missense_Mutation p.E181K 0.23 benign(0.305) TCGA-BR-8487-01 7 98546206 98546206 A G TRRAP Silent p.R1555R 0.05 TCGA-BR-8487-01 7 98658259 98658259 T C SMURF1 Missense_Mutation p.N56D 0.43 tolerated(0.17) benign(0.098) TCGA-BR-8487-01 7 99022489 99022489 G A ATP5J2-PTCD1 Nonsense_Mutation p.Q605* 0.35 TCGA-BR-8487-01 7 99081725 99081725 C T ZNF789 Missense_Mutation p.P75L 0.33 tolerated(0.17) benign(0.003) TCGA-BR-8487-01 7 99381743 99381743 C T CYP3A4 5'UTR 0.25 TCGA-BR-8487-01 7 99516942 99516942 C T TRIM4 Missense_Mutation p.G28D 0.24 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 7 99631140 99631140 A - ZKSCAN1 Frame_Shift_Del p.T340Pfs*21 0.13 TCGA-BR-8487-01 7 99674943 99674943 T G ZNF3 Missense_Mutation p.Q13P 0.28 deleterious(0.04) benign(0.001) TCGA-BR-8487-01 7 99688867 99688871 AACAC - COPS6 Frame_Shift_Del p.E219Afs*26 0.18 TCGA-BR-8487-01 7 99696971 99696971 T A MCM7 Missense_Mutation p.Q111L 0.30 tolerated(0.07) benign(0.009) TCGA-BR-8487-01 7 99704296 99704296 C - AP4M1 Frame_Shift_Del p.P386Qfs*58 0.24 TCGA-BR-8487-01 7 99704517 99704517 C T AP4M1 3'UTR 0.30 TCGA-BR-8487-01 7 99722519 99722519 C A CNPY4 3'UTR 0.29 TCGA-BR-8487-01 8 100831680 100831680 A G VPS13B Missense_Mutation p.T2913A 0.48 deleterious(0) benign(0.217) TCGA-BR-8487-01 8 101154026 101154026 A G FBXO43 Silent p.C152C 0.37 TCGA-BR-8487-01 8 101300184 101300184 C T RNF19A Silent p.R73R 0.46 TCGA-BR-8487-01 8 103663818 103663818 C T KLF10 Missense_Mutation p.V248M 0.27 tolerated(0.21) benign(0.004) TCGA-BR-8487-01 8 10383157 10383157 G A PRSS55 Missense_Mutation p.R21Q 0.33 tolerated(0.31) benign(0) TCGA-BR-8487-01 8 104340619 104340619 T - FZD6 Frame_Shift_Del p.F507Lfs*25 0.10 TCGA-BR-8487-01 8 104927779 104927779 A - RIMS2 Frame_Shift_Del p.G626Efs*3 0.28 TCGA-BR-8487-01 8 105601078 105601078 C T LRP12 Silent p.A16A 0.43 TCGA-BR-8487-01 8 106813943 106813943 C T ZFPM2 Missense_Mutation p.P545S 0.32 tolerated(0.06) probably_damaging(0.998) TCGA-BR-8487-01 8 107718739 107718739 T C OXR1 Silent p.T331T 0.46 TCGA-BR-8487-01 8 11189439 11189439 C T SLC35G5 Missense_Mutation p.T275I 0.41 tolerated(0.07) probably_damaging(0.995) TCGA-BR-8487-01 8 120744072 120744072 C - TAF2 3'UTR 0.37 TCGA-BR-8487-01 8 120865336 120865336 G A DSCC1 Missense_Mutation p.P101L 0.53 deleterious(0.01) possibly_damaging(0.787) TCGA-BR-8487-01 8 121644750 121644750 C T SNTB1 Silent p.E310E 0.32 TCGA-BR-8487-01 8 123965085 123965085 G T ZHX2 Missense_Mutation p.K445N 0.29 tolerated(0.27) probably_damaging(0.99) TCGA-BR-8487-01 8 124515635 124515635 A G FBXO32 Missense_Mutation p.F349S 0.31 deleterious(0) probably_damaging(0.998) TCGA-BR-8487-01 8 124992883 124992883 A T FER1L6 Missense_Mutation p.K414N 0.38 deleterious(0.01) possibly_damaging(0.887) TCGA-BR-8487-01 8 125113580 125113580 G A FER1L6 Splice_Site p.X1709_splice 0.44 TCGA-BR-8487-01 8 125562077 125562077 G A NDUFB9 Missense_Mutation p.D162N 0.30 tolerated_low_confidence(0.37) benign(0.005) TCGA-BR-8487-01 8 126049532 126049532 T C KIAA0196 Missense_Mutation p.N1043S 0.31 tolerated(0.34) benign(0.046) TCGA-BR-8487-01 8 131964196 131964196 T C ADCY8 Missense_Mutation p.I387V 0.39 deleterious(0.01) benign(0.089) TCGA-BR-8487-01 8 132052023 132052023 T C ADCY8 Missense_Mutation p.N186S 0.38 deleterious(0.02) probably_damaging(0.935) TCGA-BR-8487-01 8 133854953 133854953 C T PHF20L1 Missense_Mutation p.H861Y 0.33 deleterious(0.01) probably_damaging(0.995) TCGA-BR-8487-01 8 133883650 133883650 G A TG Missense_Mutation p.S111N 0.44 deleterious(0.02) possibly_damaging(0.861) TCGA-BR-8487-01 8 135613725 135613725 T C ZFAT Missense_Mutation p.Y746C 0.41 deleterious(0) probably_damaging(0.998) TCGA-BR-8487-01 8 139144796 139144796 C T FAM135B 3'UTR 0.33 TCGA-BR-8487-01 8 140631269 140631269 C T KCNK9 Silent p.P119P 0.32 TCGA-BR-8487-01 8 140744288 140744288 G A TRAPPC9 Silent p.G1169G 0.31 TCGA-BR-8487-01 8 141549445 141549445 G A AGO2 Missense_Mutation p.L715F 0.34 tolerated(0.09) probably_damaging(0.994) TCGA-BR-8487-01 8 142151330 142151330 C T DENND3 Missense_Mutation p.T97M 0.17 tolerated(0.17) benign(0.018) TCGA-BR-8487-01 8 143832494 143832495 - T LYPD2 Frame_Shift_Ins p.T52Dfs*27 0.26 TCGA-BR-8487-01 8 144378556 144378556 C T ZNF696 Silent p.Y237Y 0.35 TCGA-BR-8487-01 8 144657425 144657425 T C NAPRT1 Missense_Mutation p.E461G 0.45 tolerated(0.06) benign(0.027) TCGA-BR-8487-01 8 144940342 144940342 G A EPPK1 Silent p.D2360D 0.06 TCGA-BR-8487-01 8 144941902 144941902 C T EPPK1 Silent p.T1840T 0.34 TCGA-BR-8487-01 8 144990789 144990789 G A PLEC Silent p.P4537P 0.36 TCGA-BR-8487-01 8 144990949 144990949 T C PLEC Missense_Mutation p.D4484G 0.42 probably_damaging(0.999) TCGA-BR-8487-01 8 144999695 144999695 G A PLEC Missense_Mutation p.R1605C 0.30 unknown(0) TCGA-BR-8487-01 8 145057704 145057704 G T PARP10 Missense_Mutation p.L685I 0.25 deleterious(0.01) possibly_damaging(0.861) TCGA-BR-8487-01 8 145150773 145150773 G A CYC1 Missense_Mutation p.G56D 0.38 deleterious(0.01) possibly_damaging(0.613) TCGA-BR-8487-01 8 145692389 145692389 G A KIFC2 Missense_Mutation p.A76T 0.27 tolerated_low_confidence(0.18) benign(0.005) TCGA-BR-8487-01 8 145748846 145748846 T G LRRC14 3'UTR 0.29 TCGA-BR-8487-01 8 146033597 146033597 G A ZNF517 Silent p.A432A 0.29 TCGA-BR-8487-01 8 146156380 146156380 T C ZNF16 Missense_Mutation p.E598G 0.11 deleterious(0) probably_damaging(0.997) TCGA-BR-8487-01 8 146156435 146156435 T C ZNF16 Missense_Mutation p.K580E 0.40 deleterious(0) probably_damaging(0.979) TCGA-BR-8487-01 8 15978090 15978090 G A MSR1 Silent p.V353V 0.41 TCGA-BR-8487-01 8 17400836 17400836 G A SLC7A2 Silent p.S36S 0.41 TCGA-BR-8487-01 8 17579520 17579520 C T MTUS1 Intron 0.27 TCGA-BR-8487-01 8 1842674 1842674 C T ARHGEF10 Missense_Mutation p.A459V 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8487-01 8 18666263 18666263 A G PSD3 Intron 0.39 TCGA-BR-8487-01 8 1871167 1871167 T - ARHGEF10 Frame_Shift_Del p.L728Yfs*8 0.27 TCGA-BR-8487-01 8 2026951 2026951 C T MYOM2 Nonsense_Mutation p.R467* 0.41 TCGA-BR-8487-01 8 21927823 21927823 C - DMTN Frame_Shift_Del p.P196Rfs*35 0.29 TCGA-BR-8487-01 8 21965652 21965652 C T NUDT18 Missense_Mutation p.R123H 0.54 deleterious(0.02) benign(0.007) TCGA-BR-8487-01 8 21984903 21984903 C - HR Frame_Shift_Del p.G351Vfs*12 0.26 TCGA-BR-8487-01 8 22054259 22054260 - CC BMP1 Frame_Shift_Ins p.N614Pfs*139 0.27 TCGA-BR-8487-01 8 22105771 22105771 C T POLR3D Missense_Mutation p.R156C 0.08 deleterious(0.01) possibly_damaging(0.696) TCGA-BR-8487-01 8 22442669 22442669 G A PDLIM2 Missense_Mutation p.S402N 0.43 tolerated(0.13) benign(0.038) TCGA-BR-8487-01 8 22463638 22463638 G A CCAR2 Silent p.L33L 0.44 TCGA-BR-8487-01 8 22487477 22487477 T - BIN3 Frame_Shift_Del p.K113Sfs*13 0.40 TCGA-BR-8487-01 8 22570814 22570814 G - PEBP4 3'UTR 0.39 TCGA-BR-8487-01 8 23167365 23167365 G A LOXL2 Missense_Mutation p.R566W 0.36 deleterious(0.02) probably_damaging(1) TCGA-BR-8487-01 8 24257686 24257686 A - ADAMDEC1 Frame_Shift_Del p.K341Rfs*7 0.31 TCGA-BR-8487-01 8 24262849 24262849 G T ADAMDEC1 3'UTR 0.44 TCGA-BR-8487-01 8 24771467 24771467 G A NEFM Missense_Mutation p.R54H 0.19 deleterious(0.01) unknown(0) TCGA-BR-8487-01 8 24771944 24771944 C T NEFM Missense_Mutation p.A213V 0.48 deleterious(0) unknown(0) TCGA-BR-8487-01 8 25174531 25174531 C T DOCK5 Missense_Mutation p.R443W 0.45 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 8 27308338 27308338 C T PTK2B Missense_Mutation p.R805W 0.10 deleterious(0) benign(0.339) TCGA-BR-8487-01 8 27320602 27320602 G A CHRNA2 Missense_Mutation p.A453V 0.32 tolerated(0.31) benign(0.008) TCGA-BR-8487-01 8 27779530 27779530 C T SCARA5 Silent p.A158A 0.65 TCGA-BR-8487-01 8 27922170 27922170 G A NUGGC Missense_Mutation p.R264C 0.09 deleterious(0) possibly_damaging(0.718) TCGA-BR-8487-01 8 28625729 28625729 G A INTS9 Silent p.C637C 0.10 TCGA-BR-8487-01 8 30601697 30601697 T A UBXN8 RNA 0.44 TCGA-BR-8487-01 8 33451249 33451249 G A DUSP26 Missense_Mutation p.R80C 0.30 deleterious(0.01) benign(0.004) TCGA-BR-8487-01 8 381399 381399 A - FBXO25 Frame_Shift_Del p.R67Gfs*44 0.22 TCGA-BR-8487-01 8 38834212 38834212 A G HTRA4 Missense_Mutation p.D242G 0.39 deleterious(0.02) probably_damaging(0.993) TCGA-BR-8487-01 8 41790996 41790996 C T KAT6A Missense_Mutation p.S1581N 0.36 unknown(0) TCGA-BR-8487-01 8 42037527 42037527 C T PLAT Missense_Mutation p.R427H 0.30 tolerated(0.1) benign(0.03) TCGA-BR-8487-01 8 42232287 42232287 C T DKK4 Missense_Mutation p.G136D 0.26 tolerated(0.51) benign(0.017) TCGA-BR-8487-01 8 42275287 42275287 T C SLC20A2 3'UTR 0.43 TCGA-BR-8487-01 8 42586906 42586906 C A CHRNB3 Silent p.S152S 0.12 TCGA-BR-8487-01 8 48749922 48749922 G A PRKDC Missense_Mutation p.R2537W 0.44 probably_damaging(1) TCGA-BR-8487-01 8 48852211 48852211 A G PRKDC Missense_Mutation p.L338P 0.28 probably_damaging(0.993) TCGA-BR-8487-01 8 52258473 52258473 C T PXDNL Silent p.T1312T 0.13 TCGA-BR-8487-01 8 52321984 52321984 A G PXDNL Missense_Mutation p.C734R 0.19 deleterious(0) probably_damaging(0.999) TCGA-BR-8487-01 8 52366263 52366263 G A PXDNL Silent p.G355G 0.32 TCGA-BR-8487-01 8 55372675 55372675 T C SOX17 3'UTR 0.50 TCGA-BR-8487-01 8 57079998 57079998 G A PLAG1 Missense_Mutation p.R103W 0.24 deleterious(0) probably_damaging(0.993) TCGA-BR-8487-01 8 57228768 57228768 C A SDR16C5 Missense_Mutation p.G47C 0.38 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 8 59477589 59477589 A - SDCBP 5'UTR p.M1? 0.21 TCGA-BR-8487-01 8 62371019 62371019 A G CLVS1 Missense_Mutation p.T299A 0.39 tolerated(0.06) benign(0.05) TCGA-BR-8487-01 8 62430155 62430155 C T ASPH Silent p.R686R 0.31 TCGA-BR-8487-01 8 6372234 6372234 G A ANGPT2 Silent p.S332S 0.08 TCGA-BR-8487-01 8 6378851 6378851 A G ANGPT2 Missense_Mutation p.L216P 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8487-01 8 67563711 67563711 T A VCPIP1 Missense_Mutation p.I927F 0.40 tolerated(0.06) benign(0.11) TCGA-BR-8487-01 8 67705938 67705938 G T SGK3 5'UTR 0.18 TCGA-BR-8487-01 8 68128856 68128856 G - ARFGEF1 Frame_Shift_Del p.P1552Hfs*6 0.35 TCGA-BR-8487-01 8 68150672 68150672 T C ARFGEF1 Silent p.K1065K 0.27 TCGA-BR-8487-01 8 70515459 70515459 C T SULF1 Missense_Mutation p.A365V 0.28 deleterious(0) probably_damaging(0.999) TCGA-BR-8487-01 8 70744246 70744246 G - SLCO5A1 Frame_Shift_Del p.Y222Tfs*6 0.27 TCGA-BR-8487-01 8 74903730 74903730 C A LY96 Missense_Mutation p.A18D 0.20 tolerated(0.08) benign(0.018) TCGA-BR-8487-01 8 75227797 75227797 G A JPH1 Silent p.S146S 0.23 TCGA-BR-8487-01 8 77766906 77766906 C T ZFHX4 Silent p.D2583D 0.24 TCGA-BR-8487-01 8 77768043 77768043 A G ZFHX4 Silent p.L2962L 0.41 TCGA-BR-8487-01 8 77768387 77768387 C T ZFHX4 Missense_Mutation p.T3077M 0.37 benign(0.121) TCGA-BR-8487-01 8 82606649 82606650 - A SLC10A5 Frame_Shift_Ins p.L187Sfs*17 0.29 TCGA-BR-8487-01 8 86019547 86019547 C T LRRCC1 Missense_Mutation p.A6V 0.37 tolerated_low_confidence(0.3) unknown(0) TCGA-BR-8487-01 8 86171741 86171741 A G CA13 Missense_Mutation p.I109M 0.38 deleterious(0.03) benign(0.007) TCGA-BR-8487-01 8 87568519 87568519 G A CPNE3 Missense_Mutation p.A482T 0.19 deleterious(0) possibly_damaging(0.899) TCGA-BR-8487-01 8 92998411 92998411 C T RUNX1T1 Missense_Mutation p.G418D 0.45 tolerated(0.17) possibly_damaging(0.461) TCGA-BR-8487-01 8 92999191 92999191 C T RUNX1T1 Missense_Mutation p.G345D 0.48 deleterious(0) possibly_damaging(0.721) TCGA-BR-8487-01 8 94745716 94745716 T C RBM12B Missense_Mutation p.N975D 0.30 deleterious(0.03) probably_damaging(0.982) TCGA-BR-8487-01 8 94767147 94767147 C T TMEM67 Missense_Mutation p.A2V 0.35 tolerated_low_confidence(0.56) benign(0.002) TCGA-BR-8487-01 8 99149119 99149119 G A POP1 Silent p.R433R 0.45 TCGA-BR-8487-01 8 99441079 99441079 G A KCNS2 Missense_Mutation p.G291D 0.38 deleterious(0.03) probably_damaging(1) TCGA-BR-8487-01 8 99539030 99539030 A G STK3 Silent p.P447P 0.24 TCGA-BR-8487-01 9 100240782 100240782 C T TDRD7 Missense_Mutation p.T743I 0.25 deleterious(0) benign(0.211) TCGA-BR-8487-01 9 100456035 100456035 G T XPA Missense_Mutation p.A60D 0.47 tolerated(0.34) benign(0.012) TCGA-BR-8487-01 9 100617187 100617187 G A FOXE1 Missense_Mutation p.G331S 0.49 tolerated(0.57) benign(0.015) TCGA-BR-8487-01 9 103204337 103204337 G A MSANTD3 Silent p.A39A 0.32 TCGA-BR-8487-01 9 104309176 104309176 G A RNF20 Silent p.L274L 0.13 TCGA-BR-8487-01 9 107588115 107588115 A - ABCA1 Frame_Shift_Del p.F797Lfs*31 0.11 TCGA-BR-8487-01 9 107602587 107602587 C T ABCA1 Missense_Mutation p.A343T 0.35 tolerated(0.53) benign(0.001) TCGA-BR-8487-01 9 108151463 108151463 C T SLC44A1 3'UTR 0.29 TCGA-BR-8487-01 9 109690913 109690913 T C ZNF462 Missense_Mutation p.Y1574H 0.10 possibly_damaging(0.801) TCGA-BR-8487-01 9 109694687 109694687 C T ZNF462 Intron 0.47 TCGA-BR-8487-01 9 111625537 111625537 G A ACTL7A Missense_Mutation p.C312Y 0.39 deleterious(0.02) benign(0.002) TCGA-BR-8487-01 9 111673454 111673454 A G IKBKAP Missense_Mutation p.V399A 0.32 deleterious(0) possibly_damaging(0.73) TCGA-BR-8487-01 9 111674645 111674645 C T IKBKAP Missense_Mutation p.C363Y 0.21 deleterious(0) probably_damaging(0.936) TCGA-BR-8487-01 9 111970203 111970203 C T EPB41L4B Splice_Site p.X626_splice 0.44 TCGA-BR-8487-01 9 113217886 113217886 G A SVEP1 Silent p.C1257C 0.33 TCGA-BR-8487-01 9 114089909 114089909 T - OR2K2 Frame_Shift_Del p.I269* 0.26 TCGA-BR-8487-01 9 114131334 114131334 C T KIAA0368 Silent p.P1876P 0.35 TCGA-BR-8487-01 9 114145514 114145514 G A KIAA0368 Silent p.T1438T 0.26 TCGA-BR-8487-01 9 114246712 114246712 C T KIAA0368 Silent p.A67A 0.52 TCGA-BR-8487-01 9 116750619 116750619 C T ZNF618 Silent p.S32S 0.36 TCGA-BR-8487-01 9 117050991 117050991 G T COL27A1 Missense_Mutation p.G1352C 0.45 unknown(0) TCGA-BR-8487-01 9 117852871 117852871 C A TNC Nonsense_Mutation p.G143* 0.40 TCGA-BR-8487-01 9 118950086 118950086 G A PAPPA Missense_Mutation p.V357M 0.30 deleterious(0) possibly_damaging(0.894) TCGA-BR-8487-01 9 119188190 119188190 C T ASTN2 Silent p.T1269T 0.36 TCGA-BR-8487-01 9 119495717 119495717 C - ASTN2 Frame_Shift_Del p.V777Sfs*39 0.21 TCGA-BR-8487-01 9 119903695 119903695 G A ASTN2 Intron 0.21 TCGA-BR-8487-01 9 120053672 120053672 G A ASTN2 Missense_Mutation p.A188V 0.33 tolerated_low_confidence(0.17) possibly_damaging(0.682) TCGA-BR-8487-01 9 120476762 120476762 T C TLR4 Missense_Mutation p.Y786H 0.41 tolerated(0.3) probably_damaging(0.999) TCGA-BR-8487-01 9 123595605 123595605 G T PSMD5 Silent p.I101I 0.41 TCGA-BR-8487-01 9 123671571 123671571 C T TRAF1 Silent p.S323S 0.42 TCGA-BR-8487-01 9 123783955 123783955 C T C5 Silent p.S378S 0.33 TCGA-BR-8487-01 9 124535231 124535231 C A DAB2IP Silent p.T780T 0.24 TCGA-BR-8487-01 9 125391289 125391289 C T OR1B1 Missense_Mutation p.G176S 0.41 tolerated(0.43) benign(0.11) TCGA-BR-8487-01 9 125562731 125562731 A G OR1K1 Silent p.V110V 0.35 TCGA-BR-8487-01 9 125652521 125652521 C T RC3H2 Intron 0.27 TCGA-BR-8487-01 9 125674193 125674193 A G ZBTB6 Silent p.A53A 0.35 TCGA-BR-8487-01 9 125761008 125761008 G A RABGAP1 Missense_Mutation p.R446H 0.35 deleterious(0) probably_damaging(0.991) TCGA-BR-8487-01 9 125839022 125839022 A T RABGAP1 Missense_Mutation p.E802V 0.35 deleterious(0.02) probably_damaging(0.977) TCGA-BR-8487-01 9 126134517 126134517 G A CRB2 Missense_Mutation p.C833Y 0.36 deleterious(0) possibly_damaging(0.712) TCGA-BR-8487-01 9 127619917 127619917 C A WDR38 3'UTR 0.33 TCGA-BR-8487-01 9 127911822 127911822 A - PPP6C 3'UTR 0.80 TCGA-BR-8487-01 9 128064303 128064303 T - GAPVD1 Frame_Shift_Del p.L77Wfs*24 0.29 TCGA-BR-8487-01 9 128201077 128201077 G A MAPKAP1 3'UTR 0.13 TCGA-BR-8487-01 9 129102803 129102803 C A MVB12B Missense_Mutation p.P33H 0.34 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-BR-8487-01 9 129595580 129595580 C T ZBTB43 Silent p.Y264Y 0.54 TCGA-BR-8487-01 9 129796780 129796780 G A RALGPS1 Missense_Mutation p.R96Q 0.31 tolerated(0.17) benign(0.145) TCGA-BR-8487-01 9 130155573 130155573 G A GARNL3 3'UTR 0.11 TCGA-BR-8487-01 9 130167203 130167203 A G SLC2A8 Silent p.A361A 0.29 TCGA-BR-8487-01 9 130438929 130438929 C T STXBP1 Missense_Mutation p.T419M 0.32 deleterious(0) possibly_damaging(0.855) TCGA-BR-8487-01 9 130566653 130566653 G T FPGS Missense_Mutation p.L76F 0.32 deleterious(0.01) benign(0.382) TCGA-BR-8487-01 9 130649057 130649057 G A ST6GALNAC6 Missense_Mutation p.R275C 0.53 possibly_damaging(0.51) TCGA-BR-8487-01 9 131477738 131477738 A G PKN3 Missense_Mutation p.S603G 0.42 deleterious(0) probably_damaging(0.935) TCGA-BR-8487-01 9 131516110 131516110 T C ZER1 Missense_Mutation p.D96G 0.32 tolerated(0.64) probably_damaging(0.989) TCGA-BR-8487-01 9 131588873 131588873 T C C9orf114 Missense_Mutation p.K135R 0.42 tolerated(0.29) benign(0.034) TCGA-BR-8487-01 9 131715088 131715088 C T RP11-101E3.5 Nonsense_Mutation p.R63* 0.30 TCGA-BR-8487-01 9 131733113 131733113 G A NUP188 Missense_Mutation p.R330H 0.40 tolerated(0.14) probably_damaging(1) TCGA-BR-8487-01 9 13183417 13183417 C A MPDZ Missense_Mutation p.K883N 0.30 deleterious(0) possibly_damaging(0.786) TCGA-BR-8487-01 9 132569623 132569623 G A TOR1B Missense_Mutation p.A208T 0.28 deleterious(0.05) benign(0.099) TCGA-BR-8487-01 9 134183546 134183546 G A PPAPDC3 Missense_Mutation p.V230M 0.15 deleterious(0.03) benign(0.105) TCGA-BR-8487-01 9 134323116 134323116 C T PRRC2B Missense_Mutation p.R349W 0.30 deleterious(0) probably_damaging(0.999) TCGA-BR-8487-01 9 134473641 134473641 T G RAPGEF1 Missense_Mutation p.E685A 0.34 deleterious(0) probably_damaging(0.968) TCGA-BR-8487-01 9 135073695 135073695 T C NTNG2 Missense_Mutation p.S186P 0.44 tolerated(0.12) possibly_damaging(0.551) TCGA-BR-8487-01 9 135153636 135153636 C A SETX Missense_Mutation p.Q2221H 0.12 deleterious(0) probably_damaging(0.989) TCGA-BR-8487-01 9 135554691 135554691 A - GTF3C4 Frame_Shift_Del p.K564Rfs*18 0.19 TCGA-BR-8487-01 9 135690031 135690031 T G AK8 Missense_Mutation p.M325L 0.33 tolerated(0.67) benign(0.005) TCGA-BR-8487-01 9 135919143 135919143 G A GTF3C5 Silent p.V134V 0.16 TCGA-BR-8487-01 9 135945943 135945943 A G CEL Missense_Mutation p.Y464C 0.42 deleterious(0) probably_damaging(0.998) TCGA-BR-8487-01 9 136030623 136030623 G A GBGT1 Nonsense_Mutation p.Q101* 0.39 TCGA-BR-8487-01 9 136208462 136208462 G T MED22 Missense_Mutation p.L166I 0.33 tolerated_low_confidence(0.4) benign(0.001) TCGA-BR-8487-01 9 136216817 136216819 GAG - RPL7A In_Frame_Del p.E109del 0.37 TCGA-BR-8487-01 9 136302896 136302896 G A ADAMTS13 Missense_Mutation p.R488Q 0.40 tolerated(0.23) benign(0.208) TCGA-BR-8487-01 9 136305465 136305465 C T ADAMTS13 Missense_Mutation p.A596V 0.21 deleterious(0) probably_damaging(0.978) TCGA-BR-8487-01 9 136406103 136406103 G A ADAMTSL2 Missense_Mutation p.R221H 0.24 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 9 136573438 136573438 G A SARDH Missense_Mutation p.R481C 0.38 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 9 136726543 136726543 C T VAV2 Silent p.A111A 0.33 TCGA-BR-8487-01 9 136913300 136913300 C T BRD3 Missense_Mutation p.A331T 0.54 deleterious(0) probably_damaging(0.986) TCGA-BR-8487-01 9 137775200 137775200 C T FCN2 Silent p.N89N 0.39 TCGA-BR-8487-01 9 138378661 138378661 C - PPP1R26 Frame_Shift_Del p.S771Vfs*10 0.33 TCGA-BR-8487-01 9 138678159 138678159 C T KCNT1 Silent p.D1098D 0.16 TCGA-BR-8487-01 9 138830129 138830129 A G UBAC1 Silent p.F347F 0.12 TCGA-BR-8487-01 9 139090598 139090598 C - LHX3 Frame_Shift_Del p.Q231Sfs*6 0.33 TCGA-BR-8487-01 9 139298644 139298644 C T SDCCAG3 Silent p.A357A 0.40 TCGA-BR-8487-01 9 139310868 139310868 C A PMPCA Intron 0.39 TCGA-BR-8487-01 9 139370379 139370379 A - SEC16A Frame_Shift_Del p.F563Lfs*9 0.26 TCGA-BR-8487-01 9 139641987 139641987 A G LCN6 Missense_Mutation p.V40A 0.39 deleterious(0.05) benign(0.136) TCGA-BR-8487-01 9 139754412 139754412 C T MAMDC4 Silent p.L1090L 0.40 TCGA-BR-8487-01 9 139836876 139836876 T C FBXW5 Missense_Mutation p.K240E 0.35 deleterious(0) probably_damaging(0.998) TCGA-BR-8487-01 9 139917374 139917374 G T ABCA2 Intron 0.40 TCGA-BR-8487-01 9 139973063 139973063 C T UAP1L1 Silent p.L202L 0.49 TCGA-BR-8487-01 9 140139908 140139908 G A FAM166A Silent p.L125L 0.48 TCGA-BR-8487-01 9 140246528 140246528 G A EXD3 Missense_Mutation p.A388V 0.46 tolerated(0.32) benign(0.179) TCGA-BR-8487-01 9 140347536 140347536 G A NSMF Missense_Mutation p.T340I 0.11 tolerated(0.07) benign(0.126) TCGA-BR-8487-01 9 140356679 140356679 G - PNPLA7 Frame_Shift_Del p.I1200Sfs*148 0.21 TCGA-BR-8487-01 9 140372528 140372528 G A PNPLA7 Missense_Mutation p.T947M 0.33 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 9 140379167 140379167 G A PNPLA7 Missense_Mutation p.T740M 0.29 tolerated(0.25) benign(0.058) TCGA-BR-8487-01 9 140396151 140396151 G A PNPLA7 Missense_Mutation p.A501V 0.29 tolerated(0.11) benign(0.003) TCGA-BR-8487-01 9 140707883 140707883 C T EHMT1 Silent p.N1027N 0.36 TCGA-BR-8487-01 9 140852063 140852063 G A CACNA1B Silent p.A419A 0.27 TCGA-BR-8487-01 9 15744460 15744460 G A CCDC171 Missense_Mutation p.A747T 0.07 deleterious(0.02) probably_damaging(0.964) TCGA-BR-8487-01 9 16436034 16436034 G A BNC2 Missense_Mutation p.R720W 0.34 deleterious(0) possibly_damaging(0.854) TCGA-BR-8487-01 9 17464498 17464498 A G CNTLN Missense_Mutation p.I1136M 0.43 tolerated(0.63) benign(0.006) TCGA-BR-8487-01 9 17484353 17484353 A - CNTLN Frame_Shift_Del p.M1308* 0.28 TCGA-BR-8487-01 9 18721613 18721613 C T ADAMTSL1 Silent p.R652R 0.53 TCGA-BR-8487-01 9 19116264 19116264 A G PLIN2 Silent p.S432S 0.37 TCGA-BR-8487-01 9 2039678 2039678 A G SMARCA2 Missense_Mutation p.K190E 0.33 probably_damaging(0.989) TCGA-BR-8487-01 9 20990121 20990121 G T FOCAD Splice_Site p.X1669_splice 0.38 TCGA-BR-8487-01 9 21141078 21141078 C T IFNW1 Nonsense_Mutation p.W164* 0.24 TCGA-BR-8487-01 9 2191331 2191331 G T SMARCA2 Missense_Mutation p.G1554C 0.38 unknown(0) TCGA-BR-8487-01 9 21970981 21970981 A T CDKN2A Missense_Mutation p.V126D 0.39 deleterious(0) probably_damaging(0.995) TCGA-BR-8487-01 9 26905455 26905455 A G PLAA 3'UTR 0.42 TCGA-BR-8487-01 9 26998170 26998170 T A LRRC19 Missense_Mutation p.I51L 0.39 tolerated(0.48) benign(0.004) TCGA-BR-8487-01 9 2718806 2718806 C T KCNV2 Missense_Mutation p.T356M 0.34 tolerated(0.05) benign(0.219) TCGA-BR-8487-01 9 33442199 33442199 G A AQP3 Missense_Mutation p.H241Y 0.23 tolerated(0.54) benign(0.002) TCGA-BR-8487-01 9 33676757 33676757 C A PTENP1 RNA 0.32 TCGA-BR-8487-01 9 34098434 34098434 C T DCAF12 Missense_Mutation p.R228Q 0.37 tolerated(0.66) benign(0) TCGA-BR-8487-01 9 34500820 34500820 C A DNAI1 Silent p.S334S 0.12 TCGA-BR-8487-01 9 34568917 34568917 G A CNTFR Silent p.Y21Y 0.27 TCGA-BR-8487-01 9 35091415 35091416 CA - PIGO Frame_Shift_Del p.V823Gfs*142 0.29 TCGA-BR-8487-01 9 35091771 35091771 G A PIGO Missense_Mutation p.R705C 0.38 deleterious(0.02) possibly_damaging(0.489) TCGA-BR-8487-01 9 35107521 35107521 G A FAM214B Missense_Mutation p.P251S 0.23 tolerated(0.26) benign(0.062) TCGA-BR-8487-01 9 35108148 35108148 C - FAM214B Frame_Shift_Del p.A42Rfs*25 0.31 TCGA-BR-8487-01 9 35546612 35546612 G T RUSC2 Missense_Mutation p.G32W 0.33 deleterious(0.03) probably_damaging(0.992) TCGA-BR-8487-01 9 35562663 35562663 C T FAM166B Missense_Mutation p.R176Q 0.39 tolerated(1) benign(0.001) TCGA-BR-8487-01 9 35606842 35606843 - G TESK1 Frame_Shift_Ins p.T136Dfs*10 0.22 TCGA-BR-8487-01 9 35676366 35676366 G A CA9 Missense_Mutation p.V274M 0.42 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 9 35846850 35846850 C T TMEM8B Missense_Mutation p.A226V 0.41 deleterious(0) probably_damaging(0.994) TCGA-BR-8487-01 9 36246457 36246457 G A GNE Nonsense_Mutation p.Q94* 0.44 TCGA-BR-8487-01 9 36353240 36353240 G - RNF38 Frame_Shift_Del p.P333Qfs*12 0.24 TCGA-BR-8487-01 9 37442190 37442190 G A ZBTB5 Missense_Mutation p.T120M 0.42 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 9 37503056 37503056 A G POLR1E Missense_Mutation p.K373E 0.14 deleterious(0) possibly_damaging(0.691) TCGA-BR-8487-01 9 37521665 37521665 C T FBXO10 Missense_Mutation p.A701T 0.10 tolerated(0.46) benign(0.163) TCGA-BR-8487-01 9 38396150 38396150 C T ALDH1B1 Silent p.Y135Y 0.44 TCGA-BR-8487-01 9 4117916 4117916 A G GLIS3 Missense_Mutation p.I521T 0.41 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 9 41963899 41963899 G T RP11-204M4.2 RNA 0.13 TCGA-BR-8487-01 9 5231460 5231460 G A INSL4 5'UTR 0.33 TCGA-BR-8487-01 9 70177685 70177685 G T FOXD4L5 Missense_Mutation p.S100Y 0.17 tolerated(0.07) possibly_damaging(0.901) TCGA-BR-8487-01 9 71854958 71854958 G A TJP2 Missense_Mutation p.V852I 0.39 tolerated(0.35) benign(0.072) TCGA-BR-8487-01 9 71869217 71869217 G A TJP2 Missense_Mutation p.R1198H 0.10 deleterious(0) probably_damaging(0.997) TCGA-BR-8487-01 9 73151350 73151350 G A TRPM3 Missense_Mutation p.T1548I 0.29 tolerated_low_confidence(0.11) probably_damaging(0.998) TCGA-BR-8487-01 9 74347430 74347430 G - TMEM2 Frame_Shift_Del p.P467Lfs*10 0.23 TCGA-BR-8487-01 9 79259732 79259732 G A PRUNE2 Missense_Mutation p.T2884I 0.41 deleterious(0) probably_damaging(0.963) TCGA-BR-8487-01 9 84208020 84208020 T C TLE1 Missense_Mutation p.T501A 0.10 deleterious(0) probably_damaging(0.999) TCGA-BR-8487-01 9 85611951 85611951 T C RASEF Missense_Mutation p.I632M 0.41 deleterious(0) benign(0.095) TCGA-BR-8487-01 9 88692475 88692475 C T GOLM1 Missense_Mutation p.R54H 0.39 deleterious(0.01) benign(0.062) TCGA-BR-8487-01 9 90535893 90535893 C T SPATA31C1 RNA 0.31 TCGA-BR-8487-01 9 95609940 95609940 T - ZNF484 Frame_Shift_Del p.I379Ffs*23 0.12 TCGA-BR-8487-01 9 97062526 97062526 G A ZNF169 Missense_Mutation p.S229N 0.35 tolerated(0.05) benign(0.004) TCGA-BR-8487-01 9 97346939 97346939 C T FBP2 Missense_Mutation p.V116I 0.09 tolerated(0.07) probably_damaging(0.992) TCGA-BR-8487-01 9 98231260 98231260 A G PTCH1 Missense_Mutation p.Y675H 0.35 tolerated(0.35) benign(0.009) TCGA-BR-8487-01 X 100077249 100077249 C T CSTF2 Silent p.Y49Y 0.49 TCGA-BR-8487-01 X 100183088 100183088 T C XKRX Missense_Mutation p.Y69C 0.48 deleterious(0) probably_damaging(0.989) TCGA-BR-8487-01 X 100613407 100613407 T C BTK Missense_Mutation p.I331M 0.43 deleterious(0.01) probably_damaging(0.964) TCGA-BR-8487-01 X 100653081 100653081 T C GLA Missense_Mutation p.N336D 0.38 tolerated(0.27) benign(0.003) TCGA-BR-8487-01 X 101911431 101911431 T A GPRASP1 Missense_Mutation p.S864T 0.53 deleterious(0.04) possibly_damaging(0.686) TCGA-BR-8487-01 X 101970978 101970978 A - GPRASP2 Frame_Shift_Del p.E396Rfs*68 0.27 TCGA-BR-8487-01 X 102755236 102755236 A G RAB40A Missense_Mutation p.V150A 0.33 deleterious(0) benign(0.079) TCGA-BR-8487-01 X 103220212 103220212 T - TMSB15B 3'UTR 0.29 TCGA-BR-8487-01 X 104512145 104512145 A G IL1RAPL2 Silent p.E206E 0.40 TCGA-BR-8487-01 X 106171828 106171828 T - CLDN2 Frame_Shift_Del p.F125Sfs*32 0.26 TCGA-BR-8487-01 X 106845523 106845523 G T FRMPD3 Silent p.L1451L 0.37 TCGA-BR-8487-01 X 106957642 106957642 G T TSC22D3 3'UTR 0.38 TCGA-BR-8487-01 X 108708521 108708521 G - GUCY2F Frame_Shift_Del p.Y295Tfs*4 0.29 TCGA-BR-8487-01 X 110951411 110951411 T C ALG13 Silent p.P180P 0.43 TCGA-BR-8487-01 X 111078168 111078168 T C TRPC5 Missense_Mutation p.N626S 0.08 deleterious(0.03) possibly_damaging(0.749) TCGA-BR-8487-01 X 112023978 112023978 A - AMOT Intron 0.43 TCGA-BR-8487-01 X 114141413 114141413 C T HTR2C Missense_Mutation p.T271M 0.39 tolerated(0.05) benign(0.345) TCGA-BR-8487-01 X 117732047 117732047 A - DOCK11 Frame_Shift_Del p.S815Afs*3 0.15 TCGA-BR-8487-01 X 11778981 11778981 C T MSL3 Missense_Mutation p.R103C 0.27 tolerated(0.07) benign(0.007) TCGA-BR-8487-01 X 117959764 117959764 G T ZCCHC12 Missense_Mutation p.R186M 0.37 tolerated(0.1) benign(0.042) TCGA-BR-8487-01 X 118753946 118753947 - G SEPT6 Intron 0.33 TCGA-BR-8487-01 X 119394855 119394855 G T TMEM255A Missense_Mutation p.P307H 0.50 deleterious(0.01) probably_damaging(1) TCGA-BR-8487-01 X 119575705 119575705 G - LAMP2 Frame_Shift_Del p.L325Wfs*21 0.12 TCGA-BR-8487-01 X 119674406 119674406 G A CUL4B Silent p.S503S 0.25 TCGA-BR-8487-01 X 122551644 122551644 C T GRIA3 Intron 0.37 TCGA-BR-8487-01 X 122755187 122755187 A G THOC2 Missense_Mutation p.V1346A 0.48 tolerated(0.57) benign(0.001) TCGA-BR-8487-01 X 123805641 123805641 C A TENM1 Nonsense_Mutation p.G354* 0.33 TCGA-BR-8487-01 X 128657359 128657359 G T SMARCA1 5'UTR 0.29 TCGA-BR-8487-01 X 129203502 129203502 A C ELF4 Silent p.S320S 0.40 TCGA-BR-8487-01 X 12937486 12937486 A G TLR8 Missense_Mutation p.I109M 0.42 tolerated(0.3) benign(0.008) TCGA-BR-8487-01 X 129629169 129629169 C T RP1-274L7.1 RNA 0.41 TCGA-BR-8487-01 X 130409637 130409637 T C IGSF1 Missense_Mutation p.Y1005C 0.39 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 X 13058956 13058956 T G FAM9C Silent p.R84R 0.45 TCGA-BR-8487-01 X 132090883 132090883 C T HS6ST2 Silent p.V300V 0.33 TCGA-BR-8487-01 X 132090966 132090966 G A HS6ST2 Missense_Mutation p.R273W 0.38 deleterious(0) probably_damaging(0.924) TCGA-BR-8487-01 X 132161217 132161217 C T USP26 Silent p.R344R 0.43 TCGA-BR-8487-01 X 132351068 132351068 C T TFDP3 3'UTR 0.22 TCGA-BR-8487-01 X 133930259 133930259 C T FAM122B 5'UTR 0.31 TCGA-BR-8487-01 X 134990644 134990644 G A SAGE1 Missense_Mutation p.V437I 0.33 tolerated(0.8) benign(0.035) TCGA-BR-8487-01 X 135067951 135067951 G A SLC9A6 Missense_Mutation p.R97H 0.40 deleterious(0.03) probably_damaging(0.999) TCGA-BR-8487-01 X 135291440 135291440 A G FHL1 Missense_Mutation p.K243E 0.36 tolerated(0.2) benign(0.016) TCGA-BR-8487-01 X 135301782 135301782 C T MAP7D3 Silent p.A845A 0.29 TCGA-BR-8487-01 X 135429336 135429336 C A GPR112 Silent p.S1157S 0.38 TCGA-BR-8487-01 X 136649419 136649419 G T ZIC3 Missense_Mutation p.G190V 0.19 deleterious(0) possibly_damaging(0.784) TCGA-BR-8487-01 X 138644209 138644209 G A F9 Silent p.K455K 0.08 TCGA-BR-8487-01 X 138882248 138882248 G T ATP11C Silent p.I230I 0.29 TCGA-BR-8487-01 X 139866586 139866586 G A CDR1 5'UTR 0.49 TCGA-BR-8487-01 X 141290586 141290586 G T MAGEC2 3'UTR 0.52 TCGA-BR-8487-01 X 147733536 147733536 C T AFF2 Missense_Mutation p.R22C 0.31 deleterious(0) probably_damaging(0.997) TCGA-BR-8487-01 X 147744087 147744087 T C AFF2 Missense_Mutation p.M280T 0.38 deleterious(0.01) benign(0.037) TCGA-BR-8487-01 X 147967422 147967422 G A AFF2 Missense_Mutation p.M422I 0.07 deleterious(0) probably_damaging(0.968) TCGA-BR-8487-01 X 149818188 149818188 G A MTM1 Splice_Site p.X290_splice 0.40 TCGA-BR-8487-01 X 149905188 149905188 C A MTMR1 Missense_Mutation p.P393H 0.41 deleterious(0.01) benign(0.106) TCGA-BR-8487-01 X 149912872 149912872 C T MTMR1 Nonsense_Mutation p.R497* 0.39 TCGA-BR-8487-01 X 149937447 149937447 G - CD99L2 3'UTR 0.17 TCGA-BR-8487-01 X 150345219 150345219 C - GPR50 Frame_Shift_Del p.Y11Mfs*17 0.24 TCGA-BR-8487-01 X 151138815 151138815 C T GABRE Missense_Mutation p.G39D 0.42 tolerated(0.12) benign(0.329) TCGA-BR-8487-01 X 151283626 151283626 C T RP11-1007I13.4 RNA 0.40 TCGA-BR-8487-01 X 151358315 151358315 C T GABRA3 Missense_Mutation p.V344I 0.27 deleterious(0) probably_damaging(0.999) TCGA-BR-8487-01 X 151900066 151900066 C T MAGEA12 Silent p.L245L 0.29 TCGA-BR-8487-01 X 1522202 1522202 C - ASMTL Frame_Shift_Del p.G609Vfs*22 0.22 TCGA-BR-8487-01 X 152226190 152226190 G A PNMA3 Missense_Mutation p.A260T 0.49 tolerated(0.37) benign(0.062) TCGA-BR-8487-01 X 152807870 152807870 C T ATP2B3 Missense_Mutation p.R252C 0.34 deleterious(0.02) probably_damaging(0.934) TCGA-BR-8487-01 X 152845526 152845526 C T ATP2B3 Missense_Mutation p.P1145S 0.08 deleterious_low_confidence(0.03) probably_damaging(0.996) TCGA-BR-8487-01 X 152938067 152938067 G A PNCK Missense_Mutation p.R135W 0.48 deleterious(0) probably_damaging(0.971) TCGA-BR-8487-01 X 153050207 153050208 - A SRPK3 Frame_Shift_Ins p.H419Afs*42 0.26 TCGA-BR-8487-01 X 153069711 153069711 G A PDZD4 Silent p.S469S 0.29 TCGA-BR-8487-01 X 153130378 153130378 C T L1CAM Missense_Mutation p.D982N 0.22 tolerated(1) benign(0.004) TCGA-BR-8487-01 X 153171693 153171693 G - AVPR2 Frame_Shift_Del p.R247Afs*24 0.29 TCGA-BR-8487-01 X 153218167 153218167 G A HCFC1 Silent p.S1580S 0.41 TCGA-BR-8487-01 X 153297719 153297719 G A MECP2 Missense_Mutation p.R118W 0.43 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 X 153416216 153416216 C A OPN1LW Silent p.S67S 0.24 TCGA-BR-8487-01 X 15349522 15349522 A G PIGA Silent p.D177D 0.43 TCGA-BR-8487-01 X 153556271 153556271 C T TKTL1 Missense_Mutation p.R529W 0.44 deleterious(0.03) benign(0.301) TCGA-BR-8487-01 X 153581805 153581805 A G FLNA Missense_Mutation p.S1961P 0.42 deleterious(0.01) benign(0.154) TCGA-BR-8487-01 X 153594579 153594580 - C FLNA Frame_Shift_Ins p.E415Rfs*65 0.20 TCGA-BR-8487-01 X 153690582 153690582 G A PLXNA3 Missense_Mutation p.V417M 0.39 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 X 1537918 1537918 C T ASMTL Silent p.T445T 0.31 TCGA-BR-8487-01 X 154133272 154133272 A G F8 Silent p.R1800R 0.46 TCGA-BR-8487-01 X 15780953 15780953 G A CA5B Intron 0.30 TCGA-BR-8487-01 X 1585129 1585129 T A P2RY8 Missense_Mutation p.Y108F 0.43 deleterious(0) probably_damaging(0.989) TCGA-BR-8487-01 X 16870947 16870947 C T RBBP7 Silent p.A314A 0.33 TCGA-BR-8487-01 X 1713017 1713017 A G AKAP17A Missense_Mutation p.Y221C 0.36 deleterious(0) probably_damaging(0.979) TCGA-BR-8487-01 X 17165605 17165605 C - REPS2 3'UTR 0.36 TCGA-BR-8487-01 X 17743968 17743968 G A NHS Missense_Mutation p.R560K 0.45 tolerated(0.07) probably_damaging(0.995) TCGA-BR-8487-01 X 17744389 17744389 T C NHS Silent p.S700S 0.41 TCGA-BR-8487-01 X 19560215 19560215 G - SH3KBP1 Frame_Shift_Del p.L574Cfs*39 0.18 TCGA-BR-8487-01 X 21871621 21871621 G A MBTPS2 Missense_Mutation p.G224S 0.36 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 X 22056577 22056578 - T PHEX Intron 0.31 TCGA-BR-8487-01 X 23018420 23018420 A G DDX53 Missense_Mutation p.I82M 0.44 deleterious(0.02) probably_damaging(0.964) TCGA-BR-8487-01 X 23411871 23411871 A G PTCHD1 Missense_Mutation p.K746E 0.40 tolerated(0.12) benign(0.252) TCGA-BR-8487-01 X 24006015 24006015 T - KLHL15 3'UTR 0.24 TCGA-BR-8487-01 X 2407120 2407120 C T ZBED1 Missense_Mutation p.M547I 0.18 tolerated(0.15) benign(0.08) TCGA-BR-8487-01 X 25033798 25033798 T C ARX Silent p.K19K 0.29 TCGA-BR-8487-01 X 299352 299352 G A PPP2R3B Missense_Mutation p.P522S 0.34 tolerated(0.52) benign(0.08) TCGA-BR-8487-01 X 30326951 30326951 A G NR0B1 Missense_Mutation p.F177S 0.30 tolerated_low_confidence(0.56) benign(0.003) TCGA-BR-8487-01 X 32490321 32490321 G T DMD Missense_Mutation p.T970N 0.38 probably_damaging(0.99) TCGA-BR-8487-01 X 33357484 33357484 C T DMD 5'UTR 0.10 TCGA-BR-8487-01 X 34961384 34961384 C A FAM47B Missense_Mutation p.L146I 0.43 deleterious(0) probably_damaging(0.96) TCGA-BR-8487-01 X 34961421 34961421 A G FAM47B Missense_Mutation p.K158R 0.29 tolerated(0.14) possibly_damaging(0.603) TCGA-BR-8487-01 X 34961700 34961700 C A FAM47B Missense_Mutation p.P251H 0.45 deleterious(0.03) probably_damaging(0.994) TCGA-BR-8487-01 X 34962108 34962108 C T FAM47B Missense_Mutation p.P387L 0.35 tolerated(0.31) benign(0.024) TCGA-BR-8487-01 X 37028265 37028265 C - FAM47C Frame_Shift_Del p.P596Rfs*229 0.21 TCGA-BR-8487-01 X 38129019 38129019 G A TM4SF2 Intron 0.39 TCGA-BR-8487-01 X 39934412 39934412 T C BCOR Missense_Mutation p.R63G 0.37 deleterious(0) possibly_damaging(0.72) TCGA-BR-8487-01 X 41205842 41205842 C T DDX3X Missense_Mutation p.R528C 0.09 deleterious(0.02) probably_damaging(0.992) TCGA-BR-8487-01 X 41333774 41333774 T C NYX Silent p.R356R 0.34 TCGA-BR-8487-01 X 41334051 41334051 C T NYX Missense_Mutation p.R449C 0.31 tolerated_low_confidence(0.07) benign(0) TCGA-BR-8487-01 X 46529070 46529070 A - SLC9A7 Frame_Shift_Del p.F255Lfs*11 0.23 TCGA-BR-8487-01 X 46712975 46712975 C T RP2 Missense_Mutation p.T56M 0.44 deleterious(0.02) benign(0.066) TCGA-BR-8487-01 X 47271825 47271825 A T ZNF157 Missense_Mutation p.D118V 0.52 tolerated(0.17) benign(0.422) TCGA-BR-8487-01 X 47426415 47426415 C - ARAF Frame_Shift_Del p.R255Gfs*37 0.27 TCGA-BR-8487-01 X 47426492 47426492 C T ARAF Missense_Mutation p.R279C 0.37 deleterious(0) possibly_damaging(0.714) TCGA-BR-8487-01 X 47486574 47486574 C T CFP Silent p.E244E 0.39 TCGA-BR-8487-01 X 47775788 47775788 T C ZNF81 Silent p.P581P 0.15 TCGA-BR-8487-01 X 48372714 48372714 C T PORCN Missense_Mutation p.A269V 0.55 deleterious(0) probably_damaging(0.958) TCGA-BR-8487-01 X 48418664 48418664 T C TBC1D25 Silent p.G456G 0.40 TCGA-BR-8487-01 X 48758490 48758490 G A PQBP1 Missense_Mutation p.E31K 0.31 tolerated(0.07) benign(0.41) TCGA-BR-8487-01 X 48762402 48762402 C T SLC35A2 Missense_Mutation p.G262S 0.17 deleterious(0) possibly_damaging(0.823) TCGA-BR-8487-01 X 48891041 48891041 G A TFE3 Nonsense_Mutation p.R359* 0.33 TCGA-BR-8487-01 X 48921421 48921421 C T CCDC120 Silent p.C71C 0.50 TCGA-BR-8487-01 X 49036124 49036124 T C PRICKLE3 Missense_Mutation p.D115G 0.43 tolerated(0.07) benign(0.309) TCGA-BR-8487-01 X 53112245 53112245 C T TSPYL2 Missense_Mutation p.R189W 0.20 tolerated(0.09) benign(0.013) TCGA-BR-8487-01 X 53245079 53245079 C T KDM5C Silent p.S287S 0.23 TCGA-BR-8487-01 X 53456702 53456702 G A RIBC1 Intron 0.27 TCGA-BR-8487-01 X 53560237 53560237 A - HUWE1 3'UTR 0.40 TCGA-BR-8487-01 X 53574768 53574768 G A HUWE1 Missense_Mutation p.T3501M 0.27 unknown(0) TCGA-BR-8487-01 X 53581651 53581651 T G HUWE1 Silent p.R2813R 0.38 TCGA-BR-8487-01 X 53588851 53588851 T C HUWE1 Missense_Mutation p.D2458G 0.43 possibly_damaging(0.539) TCGA-BR-8487-01 X 53652155 53652155 G A HUWE1 Silent p.A518A 0.08 TCGA-BR-8487-01 X 54263764 54263764 A G WNK3 Missense_Mutation p.V1412A 0.23 tolerated(0.66) benign(0.002) TCGA-BR-8487-01 X 54840825 54840825 C G MAGED2 Intron 0.46 TCGA-BR-8487-01 X 55187596 55187596 G A FAM104B 5'UTR 0.32 TCGA-BR-8487-01 X 55515144 55515144 T C USP51 Missense_Mutation p.S77G 0.51 tolerated_low_confidence(0.36) unknown(0) TCGA-BR-8487-01 X 5821127 5821127 G A NLGN4X Missense_Mutation p.A531V 0.29 tolerated(0.05) benign(0.309) TCGA-BR-8487-01 X 5821498 5821498 G A NLGN4X Silent p.Y407Y 0.35 TCGA-BR-8487-01 X 63406071 63406071 G - AMER1 3'UTR 0.32 TCGA-BR-8487-01 X 64196330 64196330 T C ZC4H2 5'UTR 0.40 TCGA-BR-8487-01 X 64722733 64722733 C T ZC3H12B Nonsense_Mutation p.R719* 0.31 TCGA-BR-8487-01 X 65253607 65253607 A - VSIG4 Frame_Shift_Del p.C41Afs*14 0.14 TCGA-BR-8487-01 X 65409636 65409636 T - HEPH Frame_Shift_Del p.F362Sfs*6 0.32 TCGA-BR-8487-01 X 67272396 67272396 G A OPHN1 Silent p.S787S 0.70 TCGA-BR-8487-01 X 68725612 68725613 - C FAM155B Frame_Shift_Ins p.L166Sfs*5 0.32 TCGA-BR-8487-01 X 69478840 69478840 G A P2RY4 Missense_Mutation p.P212L 0.34 deleterious(0) probably_damaging(0.999) TCGA-BR-8487-01 X 70127625 70127625 A G TEX11 5'UTR 0.43 TCGA-BR-8487-01 X 70320819 70320819 C T FOXO4 Missense_Mutation p.R247C 0.42 tolerated(0.07) possibly_damaging(0.462) TCGA-BR-8487-01 X 70321313 70321313 C T FOXO4 Silent p.G411G 0.32 TCGA-BR-8487-01 X 70330449 70330449 T - IL2RG Frame_Shift_Del p.K120Rfs*27 0.22 TCGA-BR-8487-01 X 70389595 70389595 G A NLGN3 Missense_Mutation p.R732H 0.33 tolerated(0.14) probably_damaging(0.915) TCGA-BR-8487-01 X 70517750 70517750 C T NONO Nonsense_Mutation p.R365* 0.39 TCGA-BR-8487-01 X 73812036 73812036 G A RLIM Missense_Mutation p.R372W 0.42 deleterious(0) unknown(0) TCGA-BR-8487-01 X 75648123 75648123 T C MAGEE1 5'UTR 0.38 TCGA-BR-8487-01 X 77266709 77266709 C T ATP7A Missense_Mutation p.R636W 0.30 deleterious(0.01) probably_damaging(1) TCGA-BR-8487-01 X 77284891 77284891 C T ATP7A Nonsense_Mutation p.Q1021* 0.25 TCGA-BR-8487-01 X 77528573 77528573 T - CYSLTR1 Frame_Shift_Del p.N224Ifs*9 0.32 TCGA-BR-8487-01 X 80001091 80001091 G A BRWD3 Nonsense_Mutation p.R190* 0.41 TCGA-BR-8487-01 X 80457739 80457739 A G SH3BGRL Missense_Mutation p.T14A 0.14 tolerated(0.43) benign(0) TCGA-BR-8487-01 X 82763837 82763837 C - POU3F4 Frame_Shift_Del p.P170Rfs*71 0.27 TCGA-BR-8487-01 X 90690639 90690639 C T PABPC5 Silent p.Y21Y 0.36 TCGA-BR-8487-01 X 91132510 91132510 T C PCDH11X Missense_Mutation p.L424P 0.49 deleterious(0) probably_damaging(1) TCGA-BR-8487-01 X 96140046 96140046 G A RPA4 Missense_Mutation p.G246D 0.31 deleterious(0.01) probably_damaging(0.987) TCGA-BR-8487-01 X 99933721 99933721 C G SYTL4 Intron 0.29 TCGA-BR-8487-01 X 99942204 99942204 A G SYTL4 Silent p.A348A 0.50 TCGA-BR-8588-01 10 117823891 117823891 T C GFRA1 3'UTR 0.27 TCGA-BR-8588-01 10 125539751 125539751 G A CPXM2 Missense_Mutation p.R304C 0.12 deleterious(0.01) probably_damaging(0.939) TCGA-BR-8588-01 10 73767375 73767375 T A CHST3 Missense_Mutation p.F196I 0.11 deleterious(0.02) benign(0.11) TCGA-BR-8588-01 11 106888532 106888532 G A GUCY1A2 Missense_Mutation p.R84W 0.24 deleterious(0) possibly_damaging(0.897) TCGA-BR-8588-01 11 109294782 109294782 C T C11orf87 Silent p.C141C 0.09 TCGA-BR-8588-01 11 116734447 116734447 G T SIK3 Silent p.I574I 0.12 TCGA-BR-8588-01 11 126075385 126075385 G A RPUSD4 Silent p.L258L 0.07 TCGA-BR-8588-01 11 4929383 4929383 C T OR51A7 Missense_Mutation p.H262Y 0.11 deleterious(0) benign(0.094) TCGA-BR-8588-01 11 51412117 51412117 T C OR4A5 Silent p.Q93Q 0.13 TCGA-BR-8588-01 11 55432816 55432816 T - OR4C6 Frame_Shift_Del p.T62Pfs*18 0.09 TCGA-BR-8588-01 11 56237908 56237908 T G OR5M3 Missense_Mutation p.Q22H 0.10 deleterious(0.01) benign(0.072) TCGA-BR-8588-01 11 65825873 65825873 G T SF3B2 Missense_Mutation p.K321N 0.16 deleterious(0.04) benign(0.134) TCGA-BR-8588-01 11 84996396 84996396 A C DLG2 Missense_Mutation p.F18L 0.11 deleterious_low_confidence(0) benign(0.01) TCGA-BR-8588-01 12 121435358 121435358 T C HNF1A Missense_Mutation p.F464S 0.11 deleterious(0) probably_damaging(0.973) TCGA-BR-8588-01 12 46246234 46246234 G A ARID2 Missense_Mutation p.S1443N 0.15 tolerated_low_confidence(0.28) benign(0.104) TCGA-BR-8588-01 12 49087216 49087216 C T CCNT1 Missense_Mutation p.S594N 0.19 tolerated(0.1) benign(0.002) TCGA-BR-8588-01 12 49255803 49255803 C T RND1 Missense_Mutation p.A103T 0.12 deleterious(0) benign(0.024) TCGA-BR-8588-01 12 5021222 5021222 G A KCNA1 Silent p.T226T 0.14 TCGA-BR-8588-01 12 52385743 52385743 G A ACVR1B Missense_Mutation p.R494H 0.12 deleterious(0) possibly_damaging(0.891) TCGA-BR-8588-01 12 64521762 64521762 A G SRGAP1 Missense_Mutation p.S888G 0.16 tolerated(0.4) benign(0) TCGA-BR-8588-01 12 86383233 86383233 A T MGAT4C Missense_Mutation p.V31D 0.11 deleterious(0.01) possibly_damaging(0.553) TCGA-BR-8588-01 13 102568988 102568988 G T FGF14 Intron 0.32 TCGA-BR-8588-01 13 113508679 113508679 C T ATP11A Missense_Mutation p.T693M 0.09 deleterious(0) probably_damaging(1) TCGA-BR-8588-01 13 113750783 113750783 C T MCF2L Silent p.G1058G 0.25 TCGA-BR-8588-01 13 20577259 20577260 TG - ZMYM2 Frame_Shift_Del p.V374Yfs*3 0.21 TCGA-BR-8588-01 13 27847440 27847440 G A RASL11A Missense_Mutation p.E180K 0.22 deleterious(0) probably_damaging(0.969) TCGA-BR-8588-01 13 30097526 30097526 G A SLC7A1 Missense_Mutation p.T309M 0.08 deleterious(0.01) probably_damaging(0.994) TCGA-BR-8588-01 14 64681128 64681128 G A SYNE2 Missense_Mutation p.V6425M 0.19 probably_damaging(1) TCGA-BR-8588-01 15 25477532 25477532 T - SNORD115-33 3'Flank 0.10 TCGA-BR-8588-01 15 31244239 31244239 G A MTMR10 Missense_Mutation p.A380V 0.14 tolerated(0.39) benign(0.002) TCGA-BR-8588-01 16 1962078 1962078 C T HS3ST6 Missense_Mutation p.R150Q 0.19 deleterious(0) probably_damaging(0.998) TCGA-BR-8588-01 16 25258325 25258325 T C ZKSCAN2 Missense_Mutation p.K398E 0.09 deleterious(0) probably_damaging(0.999) TCGA-BR-8588-01 16 31073217 31073217 C T ZNF668 Silent p.T367T 0.12 TCGA-BR-8588-01 16 46761267 46761267 C T MYLK3 Missense_Mutation p.D599N 0.15 deleterious(0) probably_damaging(0.998) TCGA-BR-8588-01 16 57416298 57416298 C T CX3CL1 Missense_Mutation p.T183M 0.11 deleterious(0.03) possibly_damaging(0.72) TCGA-BR-8588-01 16 67654694 67654694 T C CTCF Missense_Mutation p.L394P 0.10 deleterious(0) probably_damaging(0.999) TCGA-BR-8588-01 17 10419965 10419965 C T MYH1 5'UTR 0.16 TCGA-BR-8588-01 17 26975987 26975987 G A SDF2 3'UTR 0.20 TCGA-BR-8588-01 17 29855754 29855754 C T RAB11FIP4 Silent p.A537A 0.13 TCGA-BR-8588-01 17 37868208 37868208 C T ERBB2 Missense_Mutation p.S310F 0.24 deleterious(0) probably_damaging(0.994) TCGA-BR-8588-01 17 56438233 56438233 G A RNF43 Nonsense_Mutation p.Q254* 0.33 TCGA-BR-8588-01 17 7224756 7224756 C T NEURL4 Missense_Mutation p.R1041H 0.08 deleterious(0.02) possibly_damaging(0.742) TCGA-BR-8588-01 19 10166291 10166291 G A C3P1 RNA 0.16 TCGA-BR-8588-01 19 12986983 12986983 G A DNASE2 Missense_Mutation p.P302S 0.19 tolerated(0.16) benign(0.223) TCGA-BR-8588-01 19 14519889 14519889 A G DDX39A Silent p.N409N 0.09 TCGA-BR-8588-01 19 17837242 17837242 G A MAP1S Missense_Mutation p.R350H 0.30 tolerated(0.06) possibly_damaging(0.481) TCGA-BR-8588-01 19 37903787 37903787 A C ZNF569 Silent p.T591T 0.12 TCGA-BR-8588-01 19 38993186 38993186 C T RYR1 Missense_Mutation p.R2552C 0.07 benign(0.255) TCGA-BR-8588-01 19 47912430 47912430 G A MEIS3 Nonsense_Mutation p.R262* 0.15 TCGA-BR-8588-01 19 50102943 50102943 C T PRR12 Missense_Mutation p.R1365W 0.18 possibly_damaging(0.835) TCGA-BR-8588-01 19 50247605 50247605 C A TSKS Missense_Mutation p.G415V 0.12 tolerated(0.19) possibly_damaging(0.856) TCGA-BR-8588-01 19 5077397 5077397 G A KDM4B Silent p.S232S 0.12 TCGA-BR-8588-01 19 58723756 58723756 T C ZNF274 Silent p.R402R 0.09 TCGA-BR-8588-01 1 11087139 11087139 C A MASP2 Nonsense_Mutation p.E622* 0.10 TCGA-BR-8588-01 1 154544028 154544028 C A CHRNB2 Silent p.I243I 0.10 TCGA-BR-8588-01 1 155030414 155030414 C T ADAM15 Missense_Mutation p.P502S 0.08 tolerated(0.08) benign(0.26) TCGA-BR-8588-01 1 155889722 155889722 C T KIAA0907 Intron 0.15 TCGA-BR-8588-01 1 156106886 156106886 T C LMNA Intron 0.12 TCGA-BR-8588-01 1 185109148 185109148 T C TRMT1L Missense_Mutation p.M356V 0.35 tolerated(0.26) possibly_damaging(0.593) TCGA-BR-8588-01 1 186099106 186099106 G T HMCN1 Missense_Mutation p.D4305Y 0.25 probably_damaging(0.999) TCGA-BR-8588-01 1 202107141 202107141 C T ARL8A Missense_Mutation p.R77H 0.07 deleterious(0) probably_damaging(0.968) TCGA-BR-8588-01 1 2435628 2435628 C T PLCH2 3'UTR 0.30 TCGA-BR-8588-01 1 247654885 247654885 C T OR2W5 RNA 0.09 TCGA-BR-8588-01 1 247978434 247978434 T C OR14A16 Missense_Mutation p.I200V 0.08 tolerated(0.44) benign(0.06) TCGA-BR-8588-01 1 27189931 27189931 G A SFN Silent p.E76E 0.14 TCGA-BR-8588-01 1 45292286 45292286 G - PTCH2 Frame_Shift_Del p.F951Sfs*42 0.14 TCGA-BR-8588-01 1 7792608 7792608 C T CAMTA1 Silent p.G1005G 0.12 TCGA-BR-8588-01 20 16348155 16348155 G A KIF16B Missense_Mutation p.T1272I 0.05 deleterious_low_confidence(0) benign(0.007) TCGA-BR-8588-01 20 33586876 33586876 G A MYH7B Missense_Mutation p.R1445Q 0.17 possibly_damaging(0.778) TCGA-BR-8588-01 20 36031241 36031241 C G SRC Missense_Mutation p.L454V 0.12 deleterious(0.02) possibly_damaging(0.676) TCGA-BR-8588-01 20 51872113 51872113 T A TSHZ2 Missense_Mutation p.L706M 0.11 deleterious(0) probably_damaging(0.988) TCGA-BR-8588-01 20 58349321 58349321 G A PHACTR3 Missense_Mutation p.G317E 0.09 deleterious(0.01) benign(0.249) TCGA-BR-8588-01 21 43319370 43319370 C T C2CD2 Silent p.A554A 0.15 TCGA-BR-8588-01 22 40043924 40043924 G A CACNA1I Silent p.S520S 0.09 TCGA-BR-8588-01 22 50901807 50901807 C T SBF1 Missense_Mutation p.A602T 0.26 tolerated(1) benign(0.002) TCGA-BR-8588-01 2 128471154 128471154 C T WDR33 Intron 0.13 TCGA-BR-8588-01 2 179469651 179469651 T A TTN Intron 0.12 TCGA-BR-8588-01 2 179595379 179595379 C A TTN Missense_Mutation p.A5961S 0.24 TCGA-BR-8588-01 2 179634998 179634998 G A TTN Silent p.A2810A 0.08 TCGA-BR-8588-01 2 203383565 203383565 T A BMPR2 Nonsense_Mutation p.Y214* 0.18 TCGA-BR-8588-01 2 220037228 220037228 G C CNPPD1 3'UTR 0.22 TCGA-BR-8588-01 2 222291236 222291236 A C EPHA4 Missense_Mutation p.F932V 0.14 deleterious(0) probably_damaging(0.966) TCGA-BR-8588-01 2 234198933 234198933 T C ATG16L1 Missense_Mutation p.I455T 0.33 deleterious(0) probably_damaging(0.989) TCGA-BR-8588-01 2 37441097 37441097 T A CEBPZ Nonsense_Mutation p.K819* 0.17 TCGA-BR-8588-01 3 113379292 113379292 C A KIAA2018 Missense_Mutation p.D413Y 0.14 possibly_damaging(0.855) TCGA-BR-8588-01 3 114070254 114070254 C A ZBTB20 Missense_Mutation p.S224I 0.12 deleterious(0) possibly_damaging(0.626) TCGA-BR-8588-01 3 1371584 1371584 G T CNTN6 Missense_Mutation p.W443C 0.20 deleterious(0) probably_damaging(0.987) TCGA-BR-8588-01 3 146173071 146173071 T C PLSCR2 Silent p.R165R 0.09 TCGA-BR-8588-01 3 178916944 178916944 A G PIK3CA Missense_Mutation p.K111E 0.12 deleterious(0.03) probably_damaging(0.983) TCGA-BR-8588-01 3 184101337 184101337 G A CHRD Silent p.E449E 0.11 TCGA-BR-8588-01 3 186330959 186330959 T G AHSG Missense_Mutation p.L10R 0.08 deleterious(0) probably_damaging(0.996) TCGA-BR-8588-01 3 195000014 195000014 T A ACAP2 3'UTR 0.23 TCGA-BR-8588-01 3 26751343 26751343 A T LRRC3B Missense_Mutation p.R60S 0.06 tolerated(0.26) benign(0.315) TCGA-BR-8588-01 3 30691807 30691807 C - TGFBR2 Frame_Shift_Del p.K130Sfs*19 0.18 TCGA-BR-8588-01 3 42251706 42251706 G A TRAK1 Intron 0.12 TCGA-BR-8588-01 3 62358293 62358293 G A FEZF2 Missense_Mutation p.P84L 0.13 tolerated(0.67) probably_damaging(0.913) TCGA-BR-8588-01 4 1369243 1369243 G A UVSSA Silent p.A460A 0.13 TCGA-BR-8588-01 4 155749220 155749220 A C RBM46 3'UTR 0.10 TCGA-BR-8588-01 4 2952857 2952857 C T NOP14 Missense_Mutation p.R329H 0.13 tolerated(0.2) benign(0.024) TCGA-BR-8588-01 4 57181587 57181587 G A KIAA1211 Missense_Mutation p.R640Q 0.14 tolerated(0.09) benign(0.417) TCGA-BR-8588-01 4 69431299 69431299 G A UGT2B17 Silent p.P288P 0.28 TCGA-BR-8588-01 4 94750923 94750923 G A ATOH1 Silent p.A282A 0.08 TCGA-BR-8588-01 5 140182233 140182233 C T PCDHA3 Missense_Mutation p.A484V 0.16 tolerated_low_confidence(0.07) benign(0.254) TCGA-BR-8588-01 5 140183035 140183035 G A PCDHA3 Silent p.S751S 0.15 TCGA-BR-8588-01 5 148977438 148977438 C T ARHGEF37 Missense_Mutation p.R36W 0.21 deleterious(0) possibly_damaging(0.713) TCGA-BR-8588-01 5 150901562 150901562 G T FAT2 Missense_Mutation p.A3531D 0.13 possibly_damaging(0.675) TCGA-BR-8588-01 5 154395311 154395311 G A KIF4B Missense_Mutation p.R631H 0.12 tolerated(0.94) benign(0) TCGA-BR-8588-01 5 172517427 172517427 G A CREBRF Missense_Mutation p.G82D 0.15 tolerated_low_confidence(0.12) benign(0.109) TCGA-BR-8588-01 5 180056397 180056397 G A FLT4 Missense_Mutation p.R283C 0.22 deleterious(0.01) benign(0.082) TCGA-BR-8588-01 5 23510114 23510114 A C PRDM9 Missense_Mutation p.E93D 0.12 tolerated_low_confidence(0.08) benign(0.018) TCGA-BR-8588-01 5 26902673 26902673 A C CDH9 Missense_Mutation p.L389V 0.16 tolerated(0.69) benign(0.026) TCGA-BR-8588-01 5 38876363 38876363 G A OSMR Missense_Mutation p.R45H 0.14 tolerated(0.56) benign(0) TCGA-BR-8588-01 5 85578578 85578578 G A NBPF22P RNA 0.14 TCGA-BR-8588-01 5 90059209 90059209 G A GPR98 Missense_Mutation p.V4070I 0.12 possibly_damaging(0.751) TCGA-BR-8588-01 6 10894339 10894339 C T SYCP2L Nonsense_Mutation p.Q80* 0.19 TCGA-BR-8588-01 6 127796968 127796968 G A SOGA3 Missense_Mutation p.R735C 0.16 deleterious(0) probably_damaging(1) TCGA-BR-8588-01 6 143090937 143090937 C T HIVEP2 Missense_Mutation p.V1647M 0.15 deleterious(0) probably_damaging(0.999) TCGA-BR-8588-01 6 167753692 167753692 G A TTLL2 Missense_Mutation p.V102I 0.36 deleterious(0.03) benign(0.086) TCGA-BR-8588-01 6 26123998 26123998 C A HIST1H2BC Silent p.V45V 0.09 TCGA-BR-8588-01 6 31778313 31778313 C T HSPA1L Silent p.T479T 0.10 TCGA-BR-8588-01 6 32010312 32010312 T C TNXB Missense_Mutation p.S473G 0.08 deleterious(0.02) benign(0.315) TCGA-BR-8588-01 6 33136332 33136332 G A COL11A2 Silent p.T1222T 0.16 TCGA-BR-8588-01 6 48036017 48036017 C A PTCHD4 Missense_Mutation p.L125F 0.15 deleterious(0.02) probably_damaging(0.986) TCGA-BR-8588-01 6 55304324 55304324 C T HMGCLL1 Missense_Mutation p.G307R 0.12 deleterious(0) probably_damaging(1) TCGA-BR-8588-01 7 128845479 128845479 C T SMO Missense_Mutation p.S259L 0.11 deleterious(0.01) benign(0.234) TCGA-BR-8588-01 7 31862790 31862790 C T PDE1C Silent p.P553P 0.05 TCGA-BR-8588-01 7 42007484 42007484 C A GLI3 Missense_Mutation p.S714I 0.15 deleterious(0) probably_damaging(0.998) TCGA-BR-8588-01 7 43503377 43503377 G T HECW1 Nonsense_Mutation p.E924* 0.08 TCGA-BR-8588-01 7 45005235 45005235 C A MYO1G Splice_Site p.X794_splice 0.16 TCGA-BR-8588-01 8 101300277 101300277 T A RNF19A Silent p.R42R 0.30 TCGA-BR-8588-01 8 113933924 113933924 T C CSMD3 Missense_Mutation p.K522R 0.20 tolerated(0.05) probably_damaging(0.964) TCGA-BR-8588-01 8 89209420 89209420 T G MMP16 Missense_Mutation p.N83T 0.13 tolerated(0.65) probably_damaging(0.957) TCGA-BR-8588-01 9 136409627 136409627 C T ADAMTSL2 Nonsense_Mutation p.R240* 0.14 TCGA-BR-8588-01 9 138012012 138012012 C T OLFM1 Silent p.S464S 0.06 TCGA-BR-8588-01 9 43626720 43626720 T G SPATA31A6 Missense_Mutation p.K656T 0.09 tolerated(0.4) benign(0.004) TCGA-BR-8588-01 X 103268176 103268176 C T H2BFWT Silent p.S19S 0.10 TCGA-BR-8588-01 X 106066491 106066491 C T TBC1D8B Missense_Mutation p.L208F 0.07 deleterious(0) probably_damaging(0.999) TCGA-BR-8588-01 X 118222008 118222008 T C KIAA1210 Missense_Mutation p.K1062R 0.09 tolerated(0.4) benign(0.216) TCGA-BR-8588-01 X 12735634 12735634 C T FRMPD4 Missense_Mutation p.R897W 0.17 deleterious(0) probably_damaging(0.998) TCGA-BR-8588-01 X 130412056 130412056 T A IGSF1 Missense_Mutation p.E703D 0.09 tolerated(0.19) possibly_damaging(0.61) TCGA-BR-8588-01 X 134156499 134156499 C T FAM127C 5'UTR 0.08 TCGA-BR-8588-01 X 135310817 135310824 CTCTTTTT - MAP7D3 Frame_Shift_Del p.E615Gfs*15 0.17 TCGA-BR-8588-01 X 135430802 135430802 T C GPR112 Missense_Mutation p.L1646P 0.12 tolerated(0.13) benign(0.04) TCGA-BR-8588-01 X 144903992 144903992 T C SLITRK2 Silent p.L17L 0.06 TCGA-BR-8588-01 X 153129810 153129810 G A L1CAM Missense_Mutation p.R1097W 0.10 tolerated(0.19) benign(0.007) TCGA-BR-8588-01 X 24597470 24597470 C T PCYT1B Missense_Mutation p.G224E 0.08 deleterious(0) probably_damaging(1) TCGA-BR-8588-01 X 34148983 34148983 G A FAM47A Silent p.P471P 0.16 TCGA-BR-8588-01 X 34657453 34657453 A G TMEM47 Missense_Mutation p.L93P 0.12 deleterious(0) probably_damaging(0.998) TCGA-BR-8588-01 X 46949185 46949185 T C RGN Silent p.A119A 0.09 TCGA-BR-8588-01 X 47509899 47509899 C A ELK1 5'Flank 0.11 TCGA-BR-8588-01 X 48776149 48776149 C T PIM2 5'UTR 0.29 TCGA-BR-8588-01 X 49032336 49032336 G A PRICKLE3 Missense_Mutation p.R512C 0.09 deleterious_low_confidence(0.01) benign(0.328) TCGA-BR-8588-01 X 55050237 55050237 T C ALAS2 Missense_Mutation p.E123G 0.12 tolerated(0.18) benign(0.001) TCGA-BR-8588-01 X 71521802 71521802 G T CITED1 Missense_Mutation p.A144E 0.09 tolerated(0.22) benign(0.02) TCGA-BR-8588-01 X 8538633 8538633 G T KAL1 Silent p.I323I 0.15 TCGA-BR-8588-01 X 8538634 8538634 A G KAL1 Missense_Mutation p.I323T 0.13 deleterious(0.03) benign(0.01) TCGA-BR-8588-01 X 9900503 9900503 A G SHROOM2 Silent p.P1060P 0.08 TCGA-BR-8589-01 10 101715673 101715673 T C DNMBP Missense_Mutation p.R520G 0.34 tolerated_low_confidence(0.32) benign(0.001) TCGA-BR-8589-01 10 102267705 102267705 T A SEC31B Missense_Mutation p.K200M 0.09 deleterious(0) probably_damaging(0.957) TCGA-BR-8589-01 10 102762461 102762461 T G LZTS2 Missense_Mutation p.F56V 0.28 tolerated(0.09) benign(0.214) TCGA-BR-8589-01 10 103588422 103588422 T G KCNIP2 Missense_Mutation p.N142T 0.31 tolerated(1) benign(0.044) TCGA-BR-8589-01 10 104164360 104164360 C T PSD Missense_Mutation p.A894T 0.28 tolerated(0.54) benign(0.022) TCGA-BR-8589-01 10 104492639 104492639 A C SFXN2 Silent p.R249R 0.14 TCGA-BR-8589-01 10 104597033 104597033 T A CYP17A1 Missense_Mutation p.K29M 0.15 deleterious(0.03) probably_damaging(0.909) TCGA-BR-8589-01 10 105202143 105202143 T C PDCD11 Silent p.A1627A 0.18 TCGA-BR-8589-01 10 106058929 106058929 A T GSTO2 Missense_Mutation p.M207L 0.30 deleterious(0) probably_damaging(0.996) TCGA-BR-8589-01 10 106970996 106970996 T G SORCS3 Missense_Mutation p.L788R 0.17 tolerated(0.11) benign(0.033) TCGA-BR-8589-01 10 112257917 112257917 A G DUSP5 Missense_Mutation p.K13R 0.23 tolerated(0.52) benign(0.02) TCGA-BR-8589-01 10 112257929 112257929 A G DUSP5 Missense_Mutation p.K17R 0.26 tolerated(0.16) benign(0.014) TCGA-BR-8589-01 10 112838854 112838854 A G ADRA2A Missense_Mutation p.E367G 0.29 tolerated(0.2) benign(0.023) TCGA-BR-8589-01 10 115959054 115959054 T G TDRD1 Silent p.T169T 0.31 TCGA-BR-8589-01 10 116055820 116055820 T A AFAP1L2 Missense_Mutation p.E813V 0.27 deleterious(0) probably_damaging(0.999) TCGA-BR-8589-01 10 118320982 118320982 A G PNLIP Splice_Site p.X390_splice 0.26 TCGA-BR-8589-01 10 12046600 12046600 A T UPF2 Missense_Mutation p.V478D 0.13 deleterious(0) probably_damaging(0.961) TCGA-BR-8589-01 10 126631424 126631424 A G ZRANB1 Missense_Mutation p.Q121R 0.08 tolerated(0.41) benign(0.003) TCGA-BR-8589-01 10 127412388 127412388 A C EDRF1 Missense_Mutation p.K131N 0.32 deleterious(0) probably_damaging(0.999) TCGA-BR-8589-01 10 128202463 128202463 T G C10orf90 Missense_Mutation p.K23T 0.28 deleterious(0.04) benign(0.005) TCGA-BR-8589-01 10 133787304 133787304 A C BNIP3 Missense_Mutation p.C64G 0.16 tolerated(0.06) probably_damaging(0.97) TCGA-BR-8589-01 10 134598505 134598505 T G NKX6-2 Missense_Mutation p.K250T 0.13 deleterious(0) probably_damaging(0.99) TCGA-BR-8589-01 10 16635430 16635430 T G RSU1 Missense_Mutation p.K266T 0.27 deleterious(0) probably_damaging(0.997) TCGA-BR-8589-01 10 17113591 17113591 T G CUBN Missense_Mutation p.E820A 0.10 tolerated(0.59) benign(0.02) TCGA-BR-8589-01 10 25887698 25887698 C A GPR158 Missense_Mutation p.S1048Y 0.17 deleterious(0.01) benign(0.007) TCGA-BR-8589-01 10 26559570 26559570 G A GAD2 Missense_Mutation p.G326E 0.17 deleterious(0) probably_damaging(0.953) TCGA-BR-8589-01 10 28899749 28899749 A C WAC Missense_Mutation p.Q429H 0.10 deleterious(0) probably_damaging(0.997) TCGA-BR-8589-01 10 32317437 32317437 T C KIF5B Silent p.K548K 0.15 TCGA-BR-8589-01 10 35930201 35930201 T C FZD8 Missense_Mutation p.M53V 0.20 deleterious(0) unknown(0) TCGA-BR-8589-01 10 43312891 43312891 A G BMS1 Silent p.G843G 0.22 TCGA-BR-8589-01 10 45799853 45799853 C T OR13A1 Silent p.E6E 0.25 TCGA-BR-8589-01 10 48385883 48385883 T G RBP3 Missense_Mutation p.K1070T 0.34 deleterious(0.03) possibly_damaging(0.728) TCGA-BR-8589-01 10 50666824 50666824 A G ERCC6 3'UTR 0.13 TCGA-BR-8589-01 10 5957404 5957404 A C FBXO18 Missense_Mutation p.K530Q 0.29 tolerated(0.37) possibly_damaging(0.674) TCGA-BR-8589-01 10 60154155 60154156 TG - TFAM Frame_Shift_Del p.S193* 0.17 TCGA-BR-8589-01 10 62648482 62648482 T A RHOBTB1 Missense_Mutation p.K315M 0.14 tolerated(0.17) benign(0.043) TCGA-BR-8589-01 10 6540451 6540451 T C PRKCQ Missense_Mutation p.K150R 0.33 tolerated(0.43) benign(0.259) TCGA-BR-8589-01 10 68687062 68687062 A T LRRTM3 Nonsense_Mutation p.R130* 0.04 TCGA-BR-8589-01 10 69748461 69748461 A C HERC4 Missense_Mutation p.F589V 0.08 tolerated(0.27) benign(0.028) TCGA-BR-8589-01 10 70139223 70139223 T G RUFY2 Missense_Mutation p.K423T 0.13 deleterious(0) probably_damaging(0.96) TCGA-BR-8589-01 10 73548718 73548718 T G CDH23 Missense_Mutation p.F1953V 0.20 tolerated(0.5) benign(0.006) TCGA-BR-8589-01 10 75884219 75884219 T G AP3M1 Missense_Mutation p.N359H 0.12 tolerated(0.1) benign(0.033) TCGA-BR-8589-01 10 78943197 78943197 A C KCNMA1 Missense_Mutation p.L264V 0.21 deleterious(0) possibly_damaging(0.681) TCGA-BR-8589-01 10 89272956 89272956 T A MINPP1 Missense_Mutation p.V304D 0.08 deleterious(0) possibly_damaging(0.797) TCGA-BR-8589-01 10 90356123 90356123 T G LIPJ Missense_Mutation p.L176V 0.21 tolerated(0.4) benign(0.037) TCGA-BR-8589-01 10 90428495 90428495 T A LIPF Missense_Mutation p.V145D 0.12 tolerated(1) benign(0.004) TCGA-BR-8589-01 10 92508893 92508893 A G HTR7 Missense_Mutation p.V333A 0.21 deleterious(0.01) probably_damaging(0.976) TCGA-BR-8589-01 10 93741866 93741866 A T BTAF1 Missense_Mutation p.Q644H 0.13 tolerated(0.21) benign(0.035) TCGA-BR-8589-01 10 95326534 95326534 A C FFAR4 Missense_Mutation p.Q19H 0.19 tolerated(0.16) benign(0.289) TCGA-BR-8589-01 10 96971666 96971666 T G C10orf129 Missense_Mutation p.L263V 0.07 tolerated(0.41) benign(0.019) TCGA-BR-8589-01 10 98303924 98303924 A C TM9SF3 Missense_Mutation p.L365R 0.20 deleterious(0) possibly_damaging(0.89) TCGA-BR-8589-01 10 98806540 98806540 T C SLIT1 Missense_Mutation p.N575S 0.14 deleterious(0) probably_damaging(0.935) TCGA-BR-8589-01 11 101375353 101375353 T G TRPC6 Missense_Mutation p.K116T 0.22 deleterious(0.01) possibly_damaging(0.849) TCGA-BR-8589-01 11 101953825 101953825 T G C11orf70 Silent p.P233P 0.14 TCGA-BR-8589-01 11 102573756 102573756 T G MMP27 Missense_Mutation p.K145N 0.18 tolerated(0.13) benign(0.002) TCGA-BR-8589-01 11 102742578 102742578 A T MMP12 RNA 0.14 TCGA-BR-8589-01 11 103058252 103058252 A C DYNC2H1 Missense_Mutation p.K2359N 0.16 probably_damaging(0.997) TCGA-BR-8589-01 11 104971470 104971470 C T CARD17 Missense_Mutation p.R15H 0.09 tolerated(0.55) benign(0.002) TCGA-BR-8589-01 11 10622466 10622466 A T MRVI1 Silent p.S672S 0.12 TCGA-BR-8589-01 11 108380425 108380425 T C EXPH5 Missense_Mutation p.S1937G 0.21 tolerated(0.07) benign(0.036) TCGA-BR-8589-01 11 108559688 108559688 T G DDX10 Missense_Mutation p.Y292D 0.08 deleterious(0) probably_damaging(0.999) TCGA-BR-8589-01 11 111405169 111405169 A C C11orf88 Missense_Mutation p.K171N 0.14 deleterious(0.01) possibly_damaging(0.617) TCGA-BR-8589-01 11 111431129 111431129 A C LAYN Missense_Mutation p.Q365H 0.10 tolerated(0.14) benign(0.002) TCGA-BR-8589-01 11 111856042 111856042 A C DIXDC1 Missense_Mutation p.Q334H 0.11 deleterious(0) possibly_damaging(0.905) TCGA-BR-8589-01 11 111955968 111955968 A C TIMM8B 3'UTR 0.17 TCGA-BR-8589-01 11 114392898 114392898 T G NXPE1 Missense_Mutation p.N337T 0.47 deleterious(0) probably_damaging(0.999) TCGA-BR-8589-01 11 116660773 116660773 A G APOA5 3'UTR 0.40 TCGA-BR-8589-01 11 116706799 116706799 G A APOA1 Missense_Mutation p.R177C 0.57 deleterious(0) probably_damaging(1) TCGA-BR-8589-01 11 117060709 117060709 C T SIDT2 Silent p.N487N 0.06 TCGA-BR-8589-01 11 117389449 117389449 G A DSCAML1 Silent p.F474F 0.08 TCGA-BR-8589-01 11 117391952 117391952 T A DSCAML1 Missense_Mutation p.E429V 0.23 tolerated(0.05) possibly_damaging(0.885) TCGA-BR-8589-01 11 117691429 117691429 A C FXYD2 Intron 0.22 TCGA-BR-8589-01 11 120957516 120957516 A C TBCEL Missense_Mutation p.K329T 0.24 deleterious(0.01) benign(0.288) TCGA-BR-8589-01 11 121039448 121039448 A G TECTA Missense_Mutation p.K1938R 0.25 tolerated(0.15) probably_damaging(0.982) TCGA-BR-8589-01 11 123814347 123814347 A G OR6T1 Missense_Mutation p.S67P 0.18 deleterious(0) probably_damaging(0.996) TCGA-BR-8589-01 11 124134872 124134872 T G OR8G5 Silent p.V50V 0.06 TCGA-BR-8589-01 11 124952150 124952150 A G SLC37A2 Missense_Mutation p.E299G 0.05 deleterious(0.01) benign(0.343) TCGA-BR-8589-01 11 125769999 125769999 C T HYLS1 Missense_Mutation p.L246F 0.19 deleterious(0.03) benign(0.258) TCGA-BR-8589-01 11 128842931 128842931 T C ARHGAP32 Missense_Mutation p.H1143R 0.08 tolerated_low_confidence(0.16) benign(0.002) TCGA-BR-8589-01 11 129321257 129321257 A C BARX2 Missense_Mutation p.E267A 0.20 tolerated_low_confidence(0.17) unknown(0) TCGA-BR-8589-01 11 129727278 129727278 T G TMEM45B Missense_Mutation p.F214C 0.10 deleterious(0) probably_damaging(1) TCGA-BR-8589-01 11 130131610 130131610 A C ZBTB44 Missense_Mutation p.S53R 0.12 deleterious(0) probably_damaging(0.997) TCGA-BR-8589-01 11 13388329 13388329 A T ARNTL Missense_Mutation p.T224S 0.15 deleterious(0.04) possibly_damaging(0.756) TCGA-BR-8589-01 11 134026966 134026966 T C NCAPD3 Missense_Mutation p.E1400G 0.05 tolerated(0.21) benign(0.03) TCGA-BR-8589-01 11 18252933 18252933 T C SAA4 3'UTR 0.21 TCGA-BR-8589-01 11 18553752 18553752 A C UEVLD 3'UTR 0.11 TCGA-BR-8589-01 11 19955499 19955499 A T NAV2 Missense_Mutation p.K593I 0.15 deleterious(0) probably_damaging(0.998) TCGA-BR-8589-01 11 22396414 22396414 A T SLC17A6 Missense_Mutation p.R385S 0.14 deleterious(0) probably_damaging(1) TCGA-BR-8589-01 11 26725161 26725161 A C SLC5A12 Silent p.T246T 0.05 TCGA-BR-8589-01 11 27015998 27015998 T C FIBIN 5'UTR 0.21 TCGA-BR-8589-01 11 27679542 27679542 A C BDNF Silent p.G272G 0.27 TCGA-BR-8589-01 11 27679792 27679792 A G BDNF Missense_Mutation p.L189P 0.30 deleterious(0.04) probably_damaging(0.991) TCGA-BR-8589-01 11 32460413 32460413 T G WT1 5'Flank 0.16 TCGA-BR-8589-01 11 35547122 35547122 A G PAMR1 Silent p.G4G 0.22 TCGA-BR-8589-01 11 3660051 3660051 G A ART5 Intron 0.09 TCGA-BR-8589-01 11 3712682 3712682 A C NUP98 Missense_Mutation p.L1450R 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8589-01 11 45265838 45265838 T G SYT13 Missense_Mutation p.K349T 0.18 deleterious(0) probably_damaging(0.999) TCGA-BR-8589-01 11 47689161 47689161 T G AGBL2 Missense_Mutation p.N768H 0.11 tolerated(0.24) benign(0.005) TCGA-BR-8589-01 11 4967444 4967444 T C OR51A4 Missense_Mutation p.K296R 0.22 tolerated(0.05) benign(0.32) TCGA-BR-8589-01 11 5020534 5020534 A G OR51L1 Missense_Mutation p.T108A 0.27 tolerated(0.24) benign(0.168) TCGA-BR-8589-01 11 5021063 5021063 T C OR51L1 Missense_Mutation p.L284P 0.23 deleterious(0) probably_damaging(1) TCGA-BR-8589-01 11 5220987 5220987 A G OR51V1 Missense_Mutation p.L315P 0.26 deleterious(0) possibly_damaging(0.707) TCGA-BR-8589-01 11 5444107 5444107 A C OR51Q1 Missense_Mutation p.N226T 0.27 tolerated(1) benign(0.042) TCGA-BR-8589-01 11 5475026 5475026 T G OR51I2 Missense_Mutation p.L103R 0.24 deleterious(0) possibly_damaging(0.613) TCGA-BR-8589-01 11 55541717 55541717 T G OR5D13 Silent p.T268T 0.12 TCGA-BR-8589-01 11 55606614 55606614 C T OR5D16 Silent p.C129C 0.23 TCGA-BR-8589-01 11 55658772 55658772 T C TRIM51 Silent p.Y341Y 0.22 TCGA-BR-8589-01 11 56309940 56309940 T G OR5M11 Missense_Mutation p.K265T 0.37 tolerated(0.2) benign(0.014) TCGA-BR-8589-01 11 57408677 57408677 T C YPEL4 3'Flank 0.20 TCGA-BR-8589-01 11 5862229 5862229 A C OR52E6 Missense_Mutation p.I300S 0.37 deleterious(0) probably_damaging(0.998) TCGA-BR-8589-01 11 59244981 59244981 T G OR4D10 Missense_Mutation p.L27V 0.06 tolerated(0.06) benign(0.191) TCGA-BR-8589-01 11 59410351 59410351 A G PATL1 Splice_Site p.X683_splice 0.12 TCGA-BR-8589-01 11 60152695 60152695 T C MS4A7 Silent p.C94C 0.12 TCGA-BR-8589-01 11 6024227 6024227 A T OR56A4 Missense_Mutation p.L51H 0.31 tolerated_low_confidence(0.15) benign(0.01) TCGA-BR-8589-01 11 62286461 62286461 A C AHNAK Missense_Mutation p.V5143G 0.14 possibly_damaging(0.69) TCGA-BR-8589-01 11 63078653 63078653 A C SLC22A10 3'UTR 0.16 TCGA-BR-8589-01 11 63175638 63175638 T C SLC22A9 Missense_Mutation p.L448P 0.18 deleterious(0) possibly_damaging(0.53) TCGA-BR-8589-01 11 63177296 63177296 A C SLC22A9 Missense_Mutation p.K542Q 0.11 deleterious(0.05) benign(0.052) TCGA-BR-8589-01 11 63487765 63487765 A C RTN3 Missense_Mutation p.E597D 0.23 tolerated(0.21) benign(0.012) TCGA-BR-8589-01 11 65792743 65792743 T C CATSPER1 Missense_Mutation p.I370V 0.24 tolerated(1) benign(0.001) TCGA-BR-8589-01 11 66113626 66113626 T G B3GNT1 Missense_Mutation p.K381T 0.23 tolerated(0.09) benign(0.068) TCGA-BR-8589-01 11 66333365 66333365 T A CTSF Missense_Mutation p.T301S 0.10 deleterious(0.03) possibly_damaging(0.859) TCGA-BR-8589-01 11 67789236 67789236 T G ALDH3B1 Missense_Mutation p.L281R 0.09 deleterious(0) probably_damaging(0.921) TCGA-BR-8589-01 11 6898191 6898191 T A OR10A4 Missense_Mutation p.F105I 0.24 tolerated(0.19) possibly_damaging(0.703) TCGA-BR-8589-01 11 70221146 70221146 T G PPFIA1 Missense_Mutation p.F1088V 0.16 deleterious(0) probably_damaging(0.989) TCGA-BR-8589-01 11 70279801 70279801 T C CTTN Missense_Mutation p.V461A 0.11 deleterious(0.03) benign(0.438) TCGA-BR-8589-01 11 7060994 7060994 A C NLRP14 Missense_Mutation p.Q113H 0.27 tolerated(0.33) benign(0.016) TCGA-BR-8589-01 11 71260091 71260091 T G KRTAP5-9 Missense_Mutation p.C130G 0.22 deleterious_low_confidence(0.02) unknown(0) TCGA-BR-8589-01 11 71808760 71808760 T G LAMTOR1 3'UTR 0.11 TCGA-BR-8589-01 11 71850819 71850819 T G FOLR3 Missense_Mutation p.F270V 0.15 deleterious(0.01) possibly_damaging(0.893) TCGA-BR-8589-01 11 73785595 73785595 A C C2CD3 Missense_Mutation p.L1552V 0.08 tolerated(0.41) benign(0.016) TCGA-BR-8589-01 11 73996867 73996867 A G P4HA3 Missense_Mutation p.L366P 0.20 deleterious(0) possibly_damaging(0.594) TCGA-BR-8589-01 11 74058298 74058298 T C PGM2L1 Silent p.K278K 0.15 TCGA-BR-8589-01 11 7439233 7439233 A G SYT9 Missense_Mutation p.K404R 0.26 deleterious(0) possibly_damaging(0.905) TCGA-BR-8589-01 11 74717517 74717517 A G NEU3 Missense_Mutation p.S456G 0.08 tolerated_low_confidence(0.1) benign(0) TCGA-BR-8589-01 11 74915651 74915651 A G SLCO2B1 3'UTR 0.28 TCGA-BR-8589-01 11 7509423 7509423 A T OLFML1 Missense_Mutation p.K65N 0.12 tolerated(0.16) possibly_damaging(0.632) TCGA-BR-8589-01 11 76917198 76917198 A T MYO7A Missense_Mutation p.K1898M 0.14 tolerated(0.05) probably_damaging(0.965) TCGA-BR-8589-01 11 77336835 77336835 T G CLNS1A Missense_Mutation p.E97D 0.08 tolerated(0.36) benign(0.008) TCGA-BR-8589-01 11 78147616 78147616 A C NARS2 3'UTR 0.12 TCGA-BR-8589-01 11 78380755 78380755 A G TENM4 Missense_Mutation p.L2212P 0.22 tolerated(0.13) benign(0.071) TCGA-BR-8589-01 11 78381295 78381295 A C TENM4 Missense_Mutation p.F2032C 0.23 deleterious(0) probably_damaging(0.987) TCGA-BR-8589-01 11 78413446 78413446 A C TENM4 Silent p.V1404V 0.11 TCGA-BR-8589-01 11 7950098 7950098 T - OR10A6 Frame_Shift_Del p.T38Pfs*2 0.19 TCGA-BR-8589-01 11 86111788 86111788 T A CCDC81 Missense_Mutation p.L276M 0.07 deleterious(0.02) possibly_damaging(0.452) TCGA-BR-8589-01 11 92088050 92088050 T G FAT3 Silent p.V924V 0.22 TCGA-BR-8589-01 11 9225542 9225542 T C DENND5A Missense_Mutation p.K205R 0.16 deleterious(0) probably_damaging(1) TCGA-BR-8589-01 11 94308224 94308224 A C PIWIL4 Missense_Mutation p.N76H 0.09 tolerated(0.62) benign(0.011) TCGA-BR-8589-01 11 9431549 9431549 A T IPO7 Missense_Mutation p.K132I 0.13 deleterious(0) probably_damaging(0.973) TCGA-BR-8589-01 11 9446534 9446534 A T IPO7 Missense_Mutation p.K405N 0.22 deleterious(0) probably_damaging(0.996) TCGA-BR-8589-01 11 94918633 94918633 A C SESN3 Missense_Mutation p.N183K 0.05 tolerated(0.08) benign(0.02) TCGA-BR-8589-01 11 9522759 9522759 A C ZNF143 Silent p.G363G 0.06 TCGA-BR-8589-01 12 1005569 1005569 A T WNK1 Missense_Mutation p.K1972N 0.20 tolerated_low_confidence(0.06) benign(0.109) TCGA-BR-8589-01 12 101790343 101790343 T C ARL1 Missense_Mutation p.R117G 0.11 deleterious(0.02) benign(0.003) TCGA-BR-8589-01 12 102174027 102174027 T C GNPTAB Missense_Mutation p.Q225R 0.10 tolerated(0.07) benign(0.009) TCGA-BR-8589-01 12 102572378 102572378 T C PARPBP Silent p.S338S 0.18 TCGA-BR-8589-01 12 103352261 103352261 A G ASCL1 Missense_Mutation p.K80R 0.20 tolerated(0.11) benign(0.019) TCGA-BR-8589-01 12 108955015 108955015 A G SART3 5'UTR 0.36 TCGA-BR-8589-01 12 108985225 108985225 A G TMEM119 3'UTR 0.22 TCGA-BR-8589-01 12 109577503 109577503 A G ACACB Missense_Mutation p.K98R 0.25 tolerated_low_confidence(0.31) benign(0.001) TCGA-BR-8589-01 12 109644623 109644623 A T ACACB Missense_Mutation p.S1008C 0.20 deleterious(0.02) possibly_damaging(0.838) TCGA-BR-8589-01 12 109959331 109959331 A C UBE3B Missense_Mutation p.K780T 0.14 deleterious(0) probably_damaging(0.995) TCGA-BR-8589-01 12 110028611 110028611 A C MVK Missense_Mutation p.K238T 0.06 deleterious(0.05) benign(0.053) TCGA-BR-8589-01 12 11139032 11139032 T C TAS2R50 Missense_Mutation p.H143R 0.37 deleterious(0.05) benign(0.081) TCGA-BR-8589-01 12 117160952 117160952 A C C12orf49 Missense_Mutation p.F63C 0.09 tolerated(0.17) benign(0.007) TCGA-BR-8589-01 12 117696841 117696841 T C NOS1 Missense_Mutation p.E821G 0.07 tolerated(0.33) probably_damaging(0.967) TCGA-BR-8589-01 12 118476183 118476183 A C WSB2 Missense_Mutation p.I190M 0.10 tolerated(0.62) possibly_damaging(0.541) TCGA-BR-8589-01 12 120214531 120214531 A C CIT Missense_Mutation p.L594R 0.06 tolerated(0.58) benign(0.028) TCGA-BR-8589-01 12 120602204 120602204 A C GCN1L1 Missense_Mutation p.L595R 0.25 possibly_damaging(0.893) TCGA-BR-8589-01 12 120650454 120650454 A T PXN Intron 0.14 TCGA-BR-8589-01 12 122990116 122990116 A G RSRC2 Silent p.G421G 0.12 TCGA-BR-8589-01 12 124359938 124359938 A G DNAH10 Missense_Mutation p.D2582G 0.22 probably_damaging(1) TCGA-BR-8589-01 12 12640054 12640054 A C DUSP16 Missense_Mutation p.F200C 0.05 deleterious(0) probably_damaging(0.968) TCGA-BR-8589-01 12 12814254 12814254 T G GPR19 Missense_Mutation p.I377L 0.09 tolerated(0.32) benign(0.002) TCGA-BR-8589-01 12 12814276 12814276 T G GPR19 Missense_Mutation p.K369N 0.08 tolerated(0.2) benign(0.011) TCGA-BR-8589-01 12 133501956 133501956 T G ZNF605 3'UTR 0.14 TCGA-BR-8589-01 12 14649259 14649259 A C ATF7IP Silent p.R1125R 0.09 TCGA-BR-8589-01 12 14706297 14706297 T G PLBD1 Missense_Mutation p.Q55H 0.26 tolerated(0.51) benign(0.025) TCGA-BR-8589-01 12 16055855 16055855 A C STRAP Missense_Mutation p.E332D 0.13 tolerated_low_confidence(0.35) benign(0.004) TCGA-BR-8589-01 12 1893087 1893087 T G ADIPOR2 Missense_Mutation p.L294V 0.17 tolerated(0.77) benign(0.016) TCGA-BR-8589-01 12 19501386 19501386 A C PLEKHA5 Missense_Mutation p.E984D 0.19 tolerated(0.17) probably_damaging(0.992) TCGA-BR-8589-01 12 21628511 21628511 C T RECQL Silent p.V369V 0.10 TCGA-BR-8589-01 12 24736739 24736739 A G LINC00477 RNA 0.35 TCGA-BR-8589-01 12 25706193 25706193 T G IFLTD1 5'UTR 0.40 TCGA-BR-8589-01 12 26640027 26640027 A G ITPR2 Missense_Mutation p.L1843S 0.20 tolerated(0.72) benign(0.001) TCGA-BR-8589-01 12 2786421 2786421 A C CACNA1C Intron 0.15 TCGA-BR-8589-01 12 2930009 2930009 T A ITFG2 Silent p.P222P 0.25 TCGA-BR-8589-01 12 32778593 32778593 T C FGD4 Silent p.A547A 0.14 TCGA-BR-8589-01 12 32778598 32778598 T C FGD4 Missense_Mutation p.L549P 0.13 tolerated(0.08) probably_damaging(0.954) TCGA-BR-8589-01 12 41327555 41327555 A C CNTN1 Missense_Mutation p.E287A 0.10 tolerated(0.1) probably_damaging(0.958) TCGA-BR-8589-01 12 41421690 41421690 A C CNTN1 Silent p.S914S 0.32 TCGA-BR-8589-01 12 44191514 44191514 C T TWF1 Silent p.Q209Q 0.08 TCGA-BR-8589-01 12 461399 461399 T C KDM5A Missense_Mutation p.K374R 0.16 deleterious(0) possibly_damaging(0.799) TCGA-BR-8589-01 12 48183070 48183070 C T HDAC7 Missense_Mutation p.A737T 0.08 deleterious(0) benign(0.234) TCGA-BR-8589-01 12 48596600 48596600 A C OR10AD1 Missense_Mutation p.F159C 0.09 deleterious(0) probably_damaging(0.937) TCGA-BR-8589-01 12 48597066 48597066 T C OR10AD1 Missense_Mutation p.N4D 0.06 deleterious(0) benign(0.345) TCGA-BR-8589-01 12 4874640 4874640 G C GALNT8 Silent p.A563A 0.10 TCGA-BR-8589-01 12 49444192 49444192 T G KMT2D Missense_Mutation p.K1060T 0.12 possibly_damaging(0.468) TCGA-BR-8589-01 12 50050607 50050607 T G FMNL3 Silent p.R264R 0.08 TCGA-BR-8589-01 12 50388012 50388012 T C RACGAP1 Missense_Mutation p.D414G 0.07 deleterious(0) probably_damaging(0.99) TCGA-BR-8589-01 12 52884661 52884661 A G KRT6A Missense_Mutation p.L298P 0.08 deleterious(0) probably_damaging(0.962) TCGA-BR-8589-01 12 53702131 53702131 A G AAAS Missense_Mutation p.L395P 0.35 deleterious(0.01) benign(0.003) TCGA-BR-8589-01 12 54369034 54369034 T C HOXC11 Missense_Mutation p.F251S 0.12 deleterious(0) probably_damaging(0.993) TCGA-BR-8589-01 12 54902229 54902229 A C NCKAP1L Silent p.S140S 0.10 TCGA-BR-8589-01 12 54970356 54970356 T G PDE1B Missense_Mutation p.F460V 0.53 tolerated(0.68) benign(0.004) TCGA-BR-8589-01 12 55524397 55524397 T G OR9K2 Missense_Mutation p.F282C 0.27 deleterious(0.01) probably_damaging(0.955) TCGA-BR-8589-01 12 55615481 55615481 A C OR10A7 Missense_Mutation p.I225L 0.21 deleterious(0.01) possibly_damaging(0.612) TCGA-BR-8589-01 12 55886425 55886425 A C OR6C68 Missense_Mutation p.K88N 0.25 tolerated_low_confidence(0.46) benign(0.015) TCGA-BR-8589-01 12 57873165 57873165 T C ARHGAP9 Missense_Mutation p.S9G 0.13 tolerated(0.21) benign(0.009) TCGA-BR-8589-01 12 6103171 6103171 T A VWF Missense_Mutation p.K2152M 0.25 deleterious(0.03) probably_damaging(0.98) TCGA-BR-8589-01 12 6125799 6125799 C T VWF Missense_Mutation p.V1732M 0.29 deleterious(0) probably_damaging(0.961) TCGA-BR-8589-01 12 6128379 6128379 T C VWF Missense_Mutation p.Q1402R 0.24 tolerated(0.12) possibly_damaging(0.894) TCGA-BR-8589-01 12 63113967 63113967 A G PPM1H Missense_Mutation p.F353L 0.12 tolerated(0.64) possibly_damaging(0.634) TCGA-BR-8589-01 12 64790385 64790385 A C RPS11P6 RNA 0.18 TCGA-BR-8589-01 12 72167766 72167766 A G RAB21 Missense_Mutation p.K119E 0.06 deleterious(0.03) benign(0.373) TCGA-BR-8589-01 12 72425581 72425581 A C TPH2 3'UTR 0.39 TCGA-BR-8589-01 12 7531781 7531781 T G CD163L1 Missense_Mutation p.N722H 0.10 deleterious(0.03) probably_damaging(0.95) TCGA-BR-8589-01 12 75601557 75601557 C T KCNC2 Silent p.P69P 0.36 TCGA-BR-8589-01 12 7802116 7802116 A C APOBEC1 3'UTR 0.09 TCGA-BR-8589-01 12 7894101 7894101 T G CLEC4C Missense_Mutation p.T51P 0.23 tolerated(0.21) benign(0.326) TCGA-BR-8589-01 12 81283052 81283052 T G LIN7A Missense_Mutation p.E60A 0.24 deleterious(0.01) benign(0.13) TCGA-BR-8589-01 12 93139251 93139251 C T PLEKHG7 Intron 0.09 TCGA-BR-8589-01 12 9318719 9318719 A C PZP Missense_Mutation p.S729R 0.35 tolerated(0.54) benign(0.076) TCGA-BR-8589-01 12 93226309 93226309 T G EEA1 Missense_Mutation p.Q411H 0.40 deleterious(0.03) probably_damaging(0.999) TCGA-BR-8589-01 12 94692436 94692436 T G PLXNC1 Missense_Mutation p.L1368R 0.28 deleterious(0) probably_damaging(1) TCGA-BR-8589-01 12 95424425 95424425 A C NR2C1 Intron 0.09 TCGA-BR-8589-01 12 99042569 99042569 T G APAF1 Missense_Mutation p.S102A 0.17 tolerated(0.18) benign(0) TCGA-BR-8589-01 13 109704747 109704747 A C MYO16 Missense_Mutation p.K969T 0.30 deleterious(0.01) probably_damaging(0.952) TCGA-BR-8589-01 13 109704765 109704765 A C MYO16 Missense_Mutation p.K975T 0.19 deleterious(0.04) probably_damaging(0.959) TCGA-BR-8589-01 13 113487306 113487306 G A ATP11A Missense_Mutation p.D510N 0.23 deleterious(0) probably_damaging(1) TCGA-BR-8589-01 13 20978777 20978777 G A CRYL1 Silent p.N281N 0.21 TCGA-BR-8589-01 13 21383284 21383284 T G XPO4 Missense_Mutation p.Q477H 0.13 deleterious(0) possibly_damaging(0.665) TCGA-BR-8589-01 13 23907309 23907309 A C SACS Missense_Mutation p.L3569R 0.13 benign(0.002) TCGA-BR-8589-01 13 23909096 23909096 A C SACS Missense_Mutation p.D2973E 0.20 probably_damaging(0.984) TCGA-BR-8589-01 13 23910752 23910752 A C SACS Missense_Mutation p.F2421L 0.21 probably_damaging(0.983) TCGA-BR-8589-01 13 25171578 25171578 A C RP11-556N21.1 RNA 0.30 TCGA-BR-8589-01 13 29600662 29600662 T C MTUS2 Silent p.P619P 0.21 TCGA-BR-8589-01 13 37447008 37447008 G - SMAD9 Frame_Shift_Del p.Q153Sfs*93 0.18 TCGA-BR-8589-01 13 37607715 37607715 A C SUPT20H Missense_Mutation p.L193R 0.08 deleterious(0) probably_damaging(0.927) TCGA-BR-8589-01 13 39265757 39265757 A C FREM2 Missense_Mutation p.S1426R 0.34 deleterious(0.01) possibly_damaging(0.696) TCGA-BR-8589-01 13 42144716 42144716 T G VWA8 Missense_Mutation p.N1833H 0.15 deleterious(0) probably_damaging(1) TCGA-BR-8589-01 13 42144783 42144783 T G VWA8 Missense_Mutation p.E1810D 0.14 tolerated(0.24) benign(0.021) TCGA-BR-8589-01 13 43787972 43787972 T G ENOX1 3'UTR 0.12 TCGA-BR-8589-01 13 47408930 47408930 T G HTR2A 3'UTR 0.26 TCGA-BR-8589-01 13 49748662 49748662 T G FNDC3A Missense_Mutation p.F441C 0.11 deleterious(0) probably_damaging(0.997) TCGA-BR-8589-01 13 52605299 52605299 T G UTP14C 3'UTR 0.22 TCGA-BR-8589-01 13 53421176 53421176 T C PCDH8 Missense_Mutation p.T466A 0.16 deleterious(0) benign(0.137) TCGA-BR-8589-01 13 60544997 60544997 T G DIAPH3 Missense_Mutation p.N650H 0.09 deleterious(0) probably_damaging(0.999) TCGA-BR-8589-01 13 67801672 67801672 T C PCDH9 Missense_Mutation p.R301G 0.29 deleterious(0.03) probably_damaging(0.938) TCGA-BR-8589-01 13 73372083 73372083 A C PIBF1 Missense_Mutation p.E197D 0.12 deleterious(0) benign(0.306) TCGA-BR-8589-01 13 73396078 73396078 A G PIBF1 Missense_Mutation p.Q255R 0.25 tolerated(0.07) possibly_damaging(0.568) TCGA-BR-8589-01 13 77635873 77635873 T G MYCBP2 Missense_Mutation p.N4238T 0.20 probably_damaging(0.977) TCGA-BR-8589-01 13 77759309 77759309 A G MYCBP2 Missense_Mutation p.F1512L 0.10 probably_damaging(0.942) TCGA-BR-8589-01 13 78493594 78493594 A C EDNRB Missense_Mutation p.F53V 0.25 tolerated_low_confidence(1) benign(0) TCGA-BR-8589-01 13 99452705 99452705 T G DOCK9 Missense_Mutation p.K1932T 0.10 deleterious(0) probably_damaging(0.999) TCGA-BR-8589-01 13 99947188 99947188 A G GPR183 3'UTR 0.28 TCGA-BR-8589-01 14 105415198 105415198 T A AHNAK2 Missense_Mutation p.K2197M 0.17 possibly_damaging(0.449) TCGA-BR-8589-01 14 106307468 106307468 A C IGHD Missense_Mutation p.F191V 0.27 deleterious(0.03) benign(0.053) TCGA-BR-8589-01 14 20389223 20389223 T C OR4K5 Missense_Mutation p.L153S 0.25 deleterious(0) probably_damaging(0.93) TCGA-BR-8589-01 14 20979222 20979222 A C RNASE10 Missense_Mutation p.K198Q 0.12 tolerated(0.06) benign(0.334) TCGA-BR-8589-01 14 22539276 22539276 T A TRAV22 Missense_Mutation p.S46T 0.10 tolerated(0.05) possibly_damaging(0.664) TCGA-BR-8589-01 14 23853762 23853762 T G MYH6 Missense_Mutation p.E1818D 0.34 deleterious(0.02) probably_damaging(0.994) TCGA-BR-8589-01 14 24627108 24627108 A T RNF31 Missense_Mutation p.K910I 0.22 tolerated(0.07) benign(0.316) TCGA-BR-8589-01 14 24675723 24675723 A C TSSK4 Missense_Mutation p.K78N 0.15 deleterious(0.02) possibly_damaging(0.76) TCGA-BR-8589-01 14 31575893 31575893 A G HECTD1 Silent p.N2395N 0.09 TCGA-BR-8589-01 14 32560921 32560921 T C ARHGAP5 Missense_Mutation p.L349P 0.16 deleterious(0) probably_damaging(0.986) TCGA-BR-8589-01 14 34204467 34204467 C T NPAS3 Missense_Mutation p.R261C 0.10 deleterious(0.02) benign(0.09) TCGA-BR-8589-01 14 34269204 34269204 A G NPAS3 Missense_Mutation p.E564G 0.35 deleterious_low_confidence(0.02) possibly_damaging(0.727) TCGA-BR-8589-01 14 38723684 38723684 A C CLEC14A 3'UTR 0.16 TCGA-BR-8589-01 14 47426820 47426820 A C MDGA2 Missense_Mutation p.L616V 0.32 tolerated(0.52) benign(0.02) TCGA-BR-8589-01 14 50116950 50116950 A C POLE2 Intron 0.15 TCGA-BR-8589-01 14 50790684 50790684 A C ATP5S Missense_Mutation p.K128T 0.25 tolerated(0.12) benign(0.325) TCGA-BR-8589-01 14 50906792 50906792 C T MAP4K5 Splice_Site p.X549_splice 0.21 TCGA-BR-8589-01 14 52981657 52981657 C T TXNDC16 Silent p.V182V 0.30 TCGA-BR-8589-01 14 53326231 53326231 T G FERMT2 Intron 0.27 TCGA-BR-8589-01 14 57268423 57268423 A T OTX2 3'UTR 0.37 TCGA-BR-8589-01 14 59965516 59965516 A C JKAMP Missense_Mutation p.K177T 0.42 tolerated(0.33) benign(0.122) TCGA-BR-8589-01 14 64716368 64716368 A G ESR2 Missense_Mutation p.L374P 0.06 deleterious(0.02) benign(0.319) TCGA-BR-8589-01 14 65252275 65252275 A C SPTB Missense_Mutation p.F1279V 0.47 deleterious(0) possibly_damaging(0.835) TCGA-BR-8589-01 14 70515511 70515511 A C SLC8A3 Missense_Mutation p.F794V 0.26 deleterious(0) probably_damaging(0.977) TCGA-BR-8589-01 14 70712504 70712504 T C ADAM21P1 RNA 0.33 TCGA-BR-8589-01 14 72117215 72117215 T G SIPA1L1 Missense_Mutation p.L661R 0.12 deleterious(0) probably_damaging(0.999) TCGA-BR-8589-01 14 72139141 72139141 A C SIPA1L1 Missense_Mutation p.N969T 0.17 deleterious(0.01) probably_damaging(0.98) TCGA-BR-8589-01 14 75283360 75283360 A G YLPM1 Silent p.K1884K 0.10 TCGA-BR-8589-01 14 78183895 78183895 A G SLIRP Silent p.K107K 0.20 TCGA-BR-8589-01 14 96783531 96783531 A C ATG2B Missense_Mutation p.V1054G 0.28 deleterious(0) benign(0.444) TCGA-BR-8589-01 15 100339966 100339966 G T DNM1P46 RNA 0.18 TCGA-BR-8589-01 15 101609038 101609038 T A LRRK1 Silent p.T2011T 0.30 TCGA-BR-8589-01 15 25351751 25351751 A T SNORD116-30 5'Flank 0.20 TCGA-BR-8589-01 15 25470187 25470187 G A SNORD115-27 3'Flank 0.24 TCGA-BR-8589-01 15 28200301 28200301 T C OCA2 Intron 0.27 TCGA-BR-8589-01 15 28478297 28478297 T C HERC2 Missense_Mutation p.K1557R 0.17 benign(0) TCGA-BR-8589-01 15 31330353 31330353 A C TRPM1 Missense_Mutation p.L795R 0.13 deleterious(0) probably_damaging(0.929) TCGA-BR-8589-01 15 40498573 40498573 A C BUB1B Missense_Mutation p.E641D 0.21 tolerated(0.07) benign(0.407) TCGA-BR-8589-01 15 40866189 40866189 A G RPUSD2 Missense_Mutation p.E456G 0.14 tolerated(0.15) benign(0.02) TCGA-BR-8589-01 15 41066632 41066632 A G DNAJC17 Silent p.Y201Y 0.09 TCGA-BR-8589-01 15 42053967 42053967 C T MGA Nonsense_Mutation p.Q2477* 0.30 TCGA-BR-8589-01 15 42281732 42281732 G T PLA2G4E Missense_Mutation p.P535H 0.22 deleterious(0) probably_damaging(0.998) TCGA-BR-8589-01 15 43748755 43748755 A T TP53BP1 Missense_Mutation p.L684H 0.07 tolerated(0.13) possibly_damaging(0.482) TCGA-BR-8589-01 15 45448048 45448048 T G DUOX1 Missense_Mutation p.F1208C 0.29 deleterious(0.04) probably_damaging(0.974) TCGA-BR-8589-01 15 45954208 45954208 C T SQRDL Missense_Mutation p.S97F 0.20 deleterious(0.01) possibly_damaging(0.781) TCGA-BR-8589-01 15 48056380 48056380 T G SEMA6D Silent p.G325G 0.21 TCGA-BR-8589-01 15 50519317 50519317 T A SLC27A2 Missense_Mutation p.L467I 0.23 tolerated(0.06) possibly_damaging(0.633) TCGA-BR-8589-01 15 50546770 50546770 T C HDC Missense_Mutation p.E178G 0.24 deleterious(0) possibly_damaging(0.472) TCGA-BR-8589-01 15 51507411 51507411 T C CYP19A1 Missense_Mutation p.R293G 0.11 tolerated(0.18) benign(0.004) TCGA-BR-8589-01 15 51772992 51772992 T C DMXL2 Missense_Mutation p.K2104R 0.11 tolerated(0.47) benign(0.003) TCGA-BR-8589-01 15 51783905 51783905 T G DMXL2 Missense_Mutation p.E1608A 0.09 tolerated(0.05) probably_damaging(0.998) TCGA-BR-8589-01 15 52725446 52725446 A G MYO5A Missense_Mutation p.W22R 0.14 deleterious(0) probably_damaging(0.999) TCGA-BR-8589-01 15 54305506 54305506 A C UNC13C Missense_Mutation p.S136R 0.25 tolerated_low_confidence(0.63) benign(0.003) TCGA-BR-8589-01 15 55612587 55612587 T G PIGB Missense_Mutation p.V93G 0.29 deleterious(0) probably_damaging(0.989) TCGA-BR-8589-01 15 56686444 56686444 A C TEX9 Missense_Mutation p.K218T 0.05 deleterious(0.01) benign(0.015) TCGA-BR-8589-01 15 56981564 56981564 A C ZNF280D Missense_Mutation p.S202A 0.24 tolerated(0.46) benign(0.015) TCGA-BR-8589-01 15 59373169 59373169 T C RNF111 Silent p.A661A 0.24 TCGA-BR-8589-01 15 59500962 59500962 T C MYO1E Missense_Mutation p.Q483R 0.06 deleterious(0.03) probably_damaging(0.998) TCGA-BR-8589-01 15 59553637 59553637 A C MYO1E Missense_Mutation p.I73M 0.23 tolerated(0.14) possibly_damaging(0.85) TCGA-BR-8589-01 15 63882994 63882994 A G USP3 Missense_Mutation p.H511R 0.23 tolerated(1) benign(0) TCGA-BR-8589-01 15 71124941 71124941 T C LARP6 Missense_Mutation p.E309G 0.23 tolerated(0.07) benign(0.012) TCGA-BR-8589-01 15 74704005 74704005 A G SEMA7A Missense_Mutation p.L490P 0.11 deleterious(0) probably_damaging(1) TCGA-BR-8589-01 15 75798030 75798030 A T PTPN9 Silent p.T318T 0.20 TCGA-BR-8589-01 15 76449088 76449088 A C C15orf27 Missense_Mutation p.K124T 0.11 deleterious(0.01) probably_damaging(0.997) TCGA-BR-8589-01 15 76673782 76673782 T C SCAPER Silent p.Q1214Q 0.17 TCGA-BR-8589-01 15 78486286 78486286 G A ACSBG1 Missense_Mutation p.T177I 0.19 deleterious(0) possibly_damaging(0.772) TCGA-BR-8589-01 15 79350698 79350698 T G RASGRF1 Missense_Mutation p.E170A 0.08 deleterious(0) probably_damaging(0.953) TCGA-BR-8589-01 15 81427654 81427654 T G C15orf26 Missense_Mutation p.L38R 0.14 deleterious(0) probably_damaging(1) TCGA-BR-8589-01 15 81592241 81592241 A C IL16 Silent p.G858G 0.18 TCGA-BR-8589-01 15 83447586 83447586 T G FSD2 Missense_Mutation p.E348A 0.32 tolerated(0.18) benign(0.002) TCGA-BR-8589-01 15 85326908 85326908 C T ZNF592 Silent p.S334S 0.20 TCGA-BR-8589-01 15 85383097 85383097 T G ALPK3 Missense_Mutation p.I398S 0.25 deleterious(0) possibly_damaging(0.643) TCGA-BR-8589-01 15 85411511 85411511 A G ALPK3 Missense_Mutation p.K1850E 0.27 deleterious(0) possibly_damaging(0.773) TCGA-BR-8589-01 15 85656658 85656658 A T PDE8A Missense_Mutation p.I389F 0.16 deleterious(0) possibly_damaging(0.835) TCGA-BR-8589-01 15 89074106 89074106 C G DET1 Silent p.R288R 0.33 TCGA-BR-8589-01 15 90210256 90210256 A G PLIN1 Missense_Mutation p.S374P 0.17 deleterious(0.03) benign(0.035) TCGA-BR-8589-01 15 91009655 91009655 A C IQGAP1 Missense_Mutation p.K674N 0.10 tolerated(0.32) benign(0.017) TCGA-BR-8589-01 15 91358410 91358410 T C BLM Silent p.T1385T 0.31 TCGA-BR-8589-01 15 93015408 93015408 A G C15orf32 Silent p.S10S 0.33 TCGA-BR-8589-01 15 97326897 97326897 T C SPATA8 Silent p.A4A 0.23 TCGA-BR-8589-01 15 99192862 99192862 T A IGF1R Missense_Mutation p.F18I 0.26 tolerated(0.28) benign(0) TCGA-BR-8589-01 15 99696485 99696485 C T TTC23 Silent p.L337L 0.17 TCGA-BR-8589-01 16 10274067 10274067 T G GRIN2A Missense_Mutation p.N68H 0.05 tolerated(0.22) probably_damaging(0.961) TCGA-BR-8589-01 16 11217681 11217681 A C CLEC16A Missense_Mutation p.K784T 0.16 tolerated(0.29) possibly_damaging(0.557) TCGA-BR-8589-01 16 1278582 1278582 G C TPSB2 3'UTR 0.20 TCGA-BR-8589-01 16 15457778 15457778 T G NPIPA5 Missense_Mutation p.K264T 0.11 tolerated(0.26) probably_damaging(0.999) TCGA-BR-8589-01 16 1705933 1705935 AGA - CRAMP1L In_Frame_Del p.K393del 0.09 TCGA-BR-8589-01 16 1836884 1836884 T C NUBP2 Missense_Mutation p.S88P 0.18 deleterious(0.01) possibly_damaging(0.653) TCGA-BR-8589-01 16 1995925 1995925 A C RPL3L Missense_Mutation p.F320V 0.20 deleterious(0) probably_damaging(0.996) TCGA-BR-8589-01 16 20043272 20043272 A C GPR139 Missense_Mutation p.F283V 0.07 tolerated(0.09) probably_damaging(0.992) TCGA-BR-8589-01 16 20430791 20430791 G A ACSM5 Intron 0.10 TCGA-BR-8589-01 16 23593647 23593647 T G NDUFAB1 Missense_Mutation p.E143D 0.20 tolerated(0.54) possibly_damaging(0.521) TCGA-BR-8589-01 16 27078600 27078600 A C C16orf82 RNA 0.25 TCGA-BR-8589-01 16 30495458 30495458 G A ITGAL Missense_Mutation p.E294K 0.30 tolerated(1) benign(0.001) TCGA-BR-8589-01 16 30667596 30667596 A C PRR14 Missense_Mutation p.E574D 0.25 tolerated(0.14) probably_damaging(0.987) TCGA-BR-8589-01 16 30733499 30733499 A T SRCAP Missense_Mutation p.N1200Y 0.24 possibly_damaging(0.703) TCGA-BR-8589-01 16 30964606 30964606 T G ORAI3 Missense_Mutation p.L110R 0.34 deleterious(0) probably_damaging(1) TCGA-BR-8589-01 16 31405555 31405555 A G ITGAD Splice_Site p.X11_splice 0.20 TCGA-BR-8589-01 16 3140576 3140576 G A ZSCAN10 Missense_Mutation p.P232S 0.12 tolerated(0.36) benign(0) TCGA-BR-8589-01 16 46755107 46755107 T - MYLK3 Splice_Site p.X639_splice 0.09 TCGA-BR-8589-01 16 4787904 4787904 A C C16orf71 Missense_Mutation p.K78T 0.22 tolerated(0.37) benign(0.116) TCGA-BR-8589-01 16 4951037 4951037 T G PPL Missense_Mutation p.Q164H 0.13 deleterious(0) probably_damaging(0.984) TCGA-BR-8589-01 16 50830253 50830253 A T CYLD Missense_Mutation p.N902I 0.27 deleterious(0) probably_damaging(0.998) TCGA-BR-8589-01 16 56396691 56396691 A G AMFR 3'UTR 0.07 TCGA-BR-8589-01 16 57760158 57760158 A C CCDC135 Missense_Mutation p.K646T 0.26 tolerated(0.27) possibly_damaging(0.791) TCGA-BR-8589-01 16 58048232 58048232 T A USB1 Splice_Site p.X168_splice 0.18 TCGA-BR-8589-01 16 58201605 58201605 A G CSNK2A2 Missense_Mutation p.L203P 0.28 deleterious(0) probably_damaging(0.999) TCGA-BR-8589-01 16 68156367 68156367 C T NFATC3 Missense_Mutation p.S194L 0.27 deleterious(0) probably_damaging(0.997) TCGA-BR-8589-01 16 68225203 68225203 T G NFATC3 Silent p.P877P 0.04 TCGA-BR-8589-01 16 69366594 69366594 T G COG8 Intron 0.14 TCGA-BR-8589-01 16 71008176 71008176 T G HYDIN Missense_Mutation p.K1646T 0.34 probably_damaging(0.969) TCGA-BR-8589-01 16 71317997 71317997 A G CMTR2 Silent p.T609T 0.19 TCGA-BR-8589-01 16 71610309 71610309 A G TAT Missense_Mutation p.Y4H 0.23 tolerated_low_confidence(0.06) possibly_damaging(0.863) TCGA-BR-8589-01 16 72094025 72094025 A G HP Missense_Mutation p.K153E 0.23 tolerated(0.72) benign(0.038) TCGA-BR-8589-01 16 75147704 75147704 C T LDHD Silent p.A321A 0.21 TCGA-BR-8589-01 16 75664405 75664405 A C KARS Missense_Mutation p.L475R 0.10 deleterious(0) probably_damaging(0.997) TCGA-BR-8589-01 16 76486611 76486611 A T CNTNAP4 Silent p.G353G 0.27 TCGA-BR-8589-01 16 81953163 81953163 T C PLCG2 Missense_Mutation p.F710S 0.22 deleterious(0) probably_damaging(1) TCGA-BR-8589-01 16 82033269 82033269 T G SDR42E1 Missense_Mutation p.K210T 0.12 tolerated(0.44) benign(0.232) TCGA-BR-8589-01 16 87446364 87446364 T C ZCCHC14 Missense_Mutation p.R518G 0.25 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-BR-8589-01 16 90128557 90128557 A G PRDM7 Silent p.A218A 0.17 TCGA-BR-8589-01 17 10300237 10300237 A C MYH8 Silent p.A1415A 0.18 TCGA-BR-8589-01 17 10415458 10415458 T G MYH1 Missense_Mutation p.K400T 0.14 deleterious(0) possibly_damaging(0.811) TCGA-BR-8589-01 17 10428180 10428180 T G MYH2 Missense_Mutation p.K1622T 0.22 deleterious(0) probably_damaging(0.984) TCGA-BR-8589-01 17 10428375 10428375 A C MYH2 Missense_Mutation p.L1557R 0.08 deleterious(0.01) possibly_damaging(0.903) TCGA-BR-8589-01 17 11572875 11572875 A C DNAH9 Missense_Mutation p.E1039D 0.21 benign(0.003) TCGA-BR-8589-01 17 15492211 15492211 A G CDRT1 3'UTR 0.12 TCGA-BR-8589-01 17 15965203 15965203 A T NCOR1 Missense_Mutation p.L1798Q 0.11 possibly_damaging(0.851) TCGA-BR-8589-01 17 16610808 16610808 A T CCDC144A Silent p.S230S 0.26 TCGA-BR-8589-01 17 16612142 16612142 T G CCDC144A Missense_Mutation p.D257E 0.30 tolerated(0.3) possibly_damaging(0.739) TCGA-BR-8589-01 17 1704257 1704257 T A SMYD4 Missense_Mutation p.K144M 0.15 deleterious(0) probably_damaging(1) TCGA-BR-8589-01 17 18044990 18044990 A G MYO15A Missense_Mutation p.K1852R 0.22 unknown(0) TCGA-BR-8589-01 17 18054711 18054711 T G MYO15A Missense_Mutation p.S2553A 0.28 unknown(0) TCGA-BR-8589-01 17 19288525 19288525 T A MFAP4 Missense_Mutation p.E160V 0.07 deleterious(0.01) possibly_damaging(0.824) TCGA-BR-8589-01 17 29185224 29185224 T A ATAD5 Missense_Mutation p.L947M 0.15 deleterious(0) probably_damaging(1) TCGA-BR-8589-01 17 32690125 32690125 T G CCL1 Missense_Mutation p.E19A 0.11 tolerated(0.05) benign(0.01) TCGA-BR-8589-01 17 33310344 33310344 A C LIG3 Missense_Mutation p.K107T 0.15 deleterious(0) probably_damaging(0.981) TCGA-BR-8589-01 17 3352328 3352328 T A SPATA22 Missense_Mutation p.S149C 0.33 deleterious(0.02) possibly_damaging(0.849) TCGA-BR-8589-01 17 33768966 33768966 T G SLFN13 Missense_Mutation p.K513T 0.16 tolerated(0.09) probably_damaging(0.938) TCGA-BR-8589-01 17 34233878 34233878 T G AC015849.16 RNA 0.09 TCGA-BR-8589-01 17 34264911 34264911 A G LYZL6 Missense_Mutation p.L50P 0.10 deleterious(0) probably_damaging(1) TCGA-BR-8589-01 17 35536243 35536243 T A ACACA Missense_Mutation p.Q1679H 0.30 tolerated(0.24) probably_damaging(0.989) TCGA-BR-8589-01 17 3593927 3593927 G A P2RX5 Silent p.H136H 0.18 TCGA-BR-8589-01 17 36486628 36486628 A C GPR179 Missense_Mutation p.L942V 0.25 deleterious(0.01) benign(0.437) TCGA-BR-8589-01 17 37226157 37226157 A C PLXDC1 Missense_Mutation p.I445M 0.38 deleterious(0.01) possibly_damaging(0.885) TCGA-BR-8589-01 17 38911503 38911503 A G KRT25 Silent p.S7S 0.10 TCGA-BR-8589-01 17 39593675 39593675 T G KRT38 Missense_Mutation p.S454R 0.17 deleterious_low_confidence(0.04) unknown(0) TCGA-BR-8589-01 17 4074022 4074022 C T ANKFY1 Silent p.L1133L 0.15 TCGA-BR-8589-01 17 40963766 40963766 T C BECN1 Missense_Mutation p.K364R 0.32 deleterious(0) probably_damaging(1) TCGA-BR-8589-01 17 41228549 41228549 A G BRCA1 Silent p.S1501S 0.15 TCGA-BR-8589-01 17 41243775 41243775 T C BRCA1 Missense_Mutation p.E1258G 0.07 tolerated(0.31) benign(0.054) TCGA-BR-8589-01 17 42636483 42636483 T A FZD2 Missense_Mutation p.V476D 0.37 deleterious(0) probably_damaging(0.997) TCGA-BR-8589-01 17 44067437 44067437 T G MAPT Missense_Mutation p.L459R 0.07 tolerated(0.38) benign(0.005) TCGA-BR-8589-01 17 44952679 44952679 A T WNT9B Missense_Mutation p.N183Y 0.42 tolerated(0.15) possibly_damaging(0.447) TCGA-BR-8589-01 17 4925494 4925494 C T KIF1C Silent p.T706T 0.19 TCGA-BR-8589-01 17 5044777 5044777 A C USP6 Missense_Mutation p.K519T 0.09 tolerated(0.29) benign(0.342) TCGA-BR-8589-01 17 51901856 51901856 A C KIF2B Missense_Mutation p.N488H 0.12 deleterious(0.02) benign(0.133) TCGA-BR-8589-01 17 56280628 56280628 T G EPX Missense_Mutation p.L632R 0.10 deleterious(0) probably_damaging(0.997) TCGA-BR-8589-01 17 56345352 56345352 T G LPO Missense_Mutation p.N712K 0.28 deleterious(0.01) benign(0.092) TCGA-BR-8589-01 17 57274918 57274918 A T PRR11 Missense_Mutation p.S291C 0.22 deleterious(0) probably_damaging(0.971) TCGA-BR-8589-01 17 57288500 57288500 A T SMG8 Missense_Mutation p.D363V 0.10 deleterious(0.01) benign(0.113) TCGA-BR-8589-01 17 61345122 61345122 C T TANC2 Silent p.A275A 0.08 TCGA-BR-8589-01 17 61571295 61571295 A C ACE Missense_Mutation p.N1050T 0.12 deleterious(0) probably_damaging(1) TCGA-BR-8589-01 17 61607903 61607903 G A KCNH6 Silent p.Q225Q 0.30 TCGA-BR-8589-01 17 61613064 61613064 G A KCNH6 Missense_Mutation p.R379Q 0.29 deleterious(0) probably_damaging(0.99) TCGA-BR-8589-01 17 61897227 61897227 T G FTSJ3 Silent p.R827R 0.06 TCGA-BR-8589-01 17 62893362 62893362 T C LRRC37A3 Missense_Mutation p.Q5R 0.06 deleterious_low_confidence(0.02) benign(0.038) TCGA-BR-8589-01 17 63957711 63957711 T A CEP112 Missense_Mutation p.K581I 0.14 deleterious(0) probably_damaging(0.999) TCGA-BR-8589-01 17 6531699 6531699 T G KIAA0753 Missense_Mutation p.Q152H 0.10 tolerated(0.09) benign(0.005) TCGA-BR-8589-01 17 65689007 65689007 T G PITPNC1 3'UTR 0.23 TCGA-BR-8589-01 17 6716238 6716238 T C TEKT1 Missense_Mutation p.K255R 0.06 tolerated(0.9) benign(0.026) TCGA-BR-8589-01 17 71197502 71197502 T G COG1 Silent p.P512P 0.28 TCGA-BR-8589-01 17 71398177 71398177 T G SDK2 Missense_Mutation p.K863T 0.29 deleterious(0) probably_damaging(0.948) TCGA-BR-8589-01 17 72613331 72613331 T G CD300E Missense_Mutation p.K105T 0.23 tolerated(0.1) benign(0.132) TCGA-BR-8589-01 17 7291747 7291747 A G TNK1 Silent p.S505S 0.14 TCGA-BR-8589-01 17 76698666 76698666 T G CYTH1 Missense_Mutation p.K64T 0.33 deleterious(0) benign(0.037) TCGA-BR-8589-01 17 78328454 78328454 C T RNF213 Intron 0.17 TCGA-BR-8589-01 17 79073837 79073837 A G BAIAP2 Missense_Mutation p.K200R 0.30 tolerated(0.49) benign(0.115) TCGA-BR-8589-01 17 80788538 80788538 A C ZNF750 Missense_Mutation p.L551R 0.09 deleterious(0) probably_damaging(0.999) TCGA-BR-8589-01 17 8926112 8926112 A C NTN1 Missense_Mutation p.K141T 0.24 deleterious(0.01) probably_damaging(1) TCGA-BR-8589-01 17 9542013 9542013 C T WDR16 Silent p.S520S 0.25 TCGA-BR-8589-01 18 12817314 12817314 A C PTPN2 Missense_Mutation p.D182E 0.34 deleterious(0) possibly_damaging(0.787) TCGA-BR-8589-01 18 20573460 20573460 A T RBBP8 Missense_Mutation p.E557V 0.23 deleterious(0) benign(0.319) TCGA-BR-8589-01 18 2577822 2577822 T G NDC80 Missense_Mutation p.L86R 0.16 deleterious(0) probably_damaging(0.993) TCGA-BR-8589-01 18 32706943 32706943 A T MAPRE2 Silent p.P214P 0.14 TCGA-BR-8589-01 18 32838072 32838072 T G ZSCAN30 Intron 0.27 TCGA-BR-8589-01 18 34740221 34740221 C T KIAA1328 Missense_Mutation p.H431Y 0.15 tolerated(1) benign(0.001) TCGA-BR-8589-01 18 54363663 54363663 T A WDR7 Silent p.T516T 0.14 TCGA-BR-8589-01 18 56825903 56825903 A C SEC11C Missense_Mutation p.K189Q 0.18 tolerated(1) benign(0.01) TCGA-BR-8589-01 18 61309092 61309092 A T SERPINB4 Missense_Mutation p.F85I 0.32 tolerated(0.05) possibly_damaging(0.652) TCGA-BR-8589-01 18 61326731 61326731 A T SERPINB3 Missense_Mutation p.F85I 0.13 deleterious(0.04) possibly_damaging(0.849) TCGA-BR-8589-01 18 61377558 61377558 T G SERPINB11 Missense_Mutation p.L44R 0.58 deleterious(0) probably_damaging(0.998) TCGA-BR-8589-01 18 61564434 61564434 A C SERPINB2 Missense_Mutation p.K133T 0.33 deleterious(0) possibly_damaging(0.872) TCGA-BR-8589-01 18 6978368 6978368 T C LAMA1 Missense_Mutation p.D2006G 0.25 tolerated(0.36) benign(0.002) TCGA-BR-8589-01 18 7231432 7231432 T G LRRC30 Missense_Mutation p.L99R 0.40 deleterious(0) probably_damaging(0.988) TCGA-BR-8589-01 18 76754796 76754796 C T SALL3 Silent p.T935T 0.30 TCGA-BR-8589-01 18 8825346 8825346 T A SOGA2 Missense_Mutation p.L1280M 0.19 tolerated(1) benign(0.021) TCGA-BR-8589-01 18 9535697 9535697 T G RALBP1 Missense_Mutation p.I577S 0.19 deleterious(0) possibly_damaging(0.628) TCGA-BR-8589-01 19 11515881 11515881 A G RGL3 Missense_Mutation p.L376P 0.16 deleterious(0) probably_damaging(0.999) TCGA-BR-8589-01 19 11597811 11597811 T C ZNF653 Missense_Mutation p.E445G 0.11 tolerated(0.2) possibly_damaging(0.449) TCGA-BR-8589-01 19 11891643 11891643 C T ZNF441 Missense_Mutation p.P335L 0.19 tolerated(0.06) possibly_damaging(0.791) TCGA-BR-8589-01 19 12429443 12429443 T G ZNF563 Silent p.R466R 0.10 TCGA-BR-8589-01 19 12461443 12461443 T G ZNF442 Missense_Mutation p.K319T 0.12 deleterious(0.01) probably_damaging(0.928) TCGA-BR-8589-01 19 12502375 12502375 T C ZNF799 Silent p.K279K 0.25 TCGA-BR-8589-01 19 14208394 14208394 G C PRKACA Missense_Mutation p.S213R 0.22 deleterious(0) possibly_damaging(0.879) TCGA-BR-8589-01 19 14271421 14271421 T G LPHN1 Missense_Mutation p.N538T 0.16 tolerated(0.23) benign(0.04) TCGA-BR-8589-01 19 14857053 14857053 C T EMR2 Missense_Mutation p.R725Q 0.19 tolerated(0.92) benign(0.002) TCGA-BR-8589-01 19 15061178 15061178 G T SLC1A6 Missense_Mutation p.N508K 0.27 deleterious(0) probably_damaging(0.996) TCGA-BR-8589-01 19 15839343 15839343 T G OR10H2 Missense_Mutation p.F164V 0.17 deleterious(0) probably_damaging(1) TCGA-BR-8589-01 19 17088246 17088246 C T CPAMD8 Missense_Mutation p.V611I 0.29 tolerated(0.09) probably_damaging(0.965) TCGA-BR-8589-01 19 17728589 17728589 A C UNC13A Missense_Mutation p.L1494V 0.31 deleterious(0) probably_damaging(0.975) TCGA-BR-8589-01 19 18499616 18499616 C T GDF15 Silent p.P266P 0.32 TCGA-BR-8589-01 19 20044675 20044675 A C ZNF93 Missense_Mutation p.K304T 0.22 deleterious(0.03) probably_damaging(0.992) TCGA-BR-8589-01 19 21606364 21606364 T G ZNF493 Silent p.T301T 0.23 TCGA-BR-8589-01 19 21688455 21688455 C T ZNF429 5'UTR 0.12 TCGA-BR-8589-01 19 21990896 21990896 T G ZNF43 Missense_Mutation p.K648T 0.19 deleterious(0) probably_damaging(0.984) TCGA-BR-8589-01 19 23927176 23927176 T G ZNF681 Missense_Mutation p.K392N 0.26 deleterious(0.01) possibly_damaging(0.825) TCGA-BR-8589-01 19 2433832 2433832 A G LMNB2 Missense_Mutation p.S492P 0.26 deleterious(0) probably_damaging(0.979) TCGA-BR-8589-01 19 2767593 2767593 C T SGTA Silent p.A64A 0.15 TCGA-BR-8589-01 19 2877903 2877903 A C ZNF556 Missense_Mutation p.K316T 0.13 deleterious(0.04) benign(0.117) TCGA-BR-8589-01 19 36113924 36113924 T C HAUS5 3'UTR 0.24 TCGA-BR-8589-01 19 36275211 36275211 A G ARHGAP33 Missense_Mutation p.D520G 0.25 tolerated_low_confidence(0.12) possibly_damaging(0.728) TCGA-BR-8589-01 19 36347947 36347947 A G KIRREL2 5'UTR 0.17 TCGA-BR-8589-01 19 36362645 36362645 T G APLP1 Silent p.V223V 0.12 TCGA-BR-8589-01 19 36387301 36387301 A C NFKBID Missense_Mutation p.V133G 0.28 deleterious(0) probably_damaging(0.999) TCGA-BR-8589-01 19 3653457 3653457 T C PIP5K1C Missense_Mutation p.K251R 0.08 deleterious(0.02) probably_damaging(0.999) TCGA-BR-8589-01 19 36884189 36884189 T G ZFP82 Missense_Mutation p.Q351H 0.07 tolerated(0.07) possibly_damaging(0.841) TCGA-BR-8589-01 19 36898797 36898797 A C ZFP82 Missense_Mutation p.V43G 0.08 deleterious(0) possibly_damaging(0.672) TCGA-BR-8589-01 19 37117974 37117974 A C ZNF382 Missense_Mutation p.K392T 0.22 deleterious(0) probably_damaging(0.998) TCGA-BR-8589-01 19 37642494 37642494 A C ZNF585A Silent p.A714A 0.22 TCGA-BR-8589-01 19 38028502 38028502 T G ZNF793 Missense_Mutation p.S314R 0.33 tolerated(0.09) possibly_damaging(0.575) TCGA-BR-8589-01 19 38230164 38230164 A T ZNF573 Silent p.T409T 0.26 TCGA-BR-8589-01 19 38230495 38230495 T A ZNF573 Missense_Mutation p.E299V 0.10 deleterious(0.02) benign(0.188) TCGA-BR-8589-01 19 38995497 38995497 A C RYR1 Missense_Mutation p.K2726T 0.19 benign(0.066) TCGA-BR-8589-01 19 39123298 39123298 A G EIF3K Missense_Mutation p.E160G 0.33 deleterious(0.02) benign(0.337) TCGA-BR-8589-01 19 39575853 39575853 A G PAPL 5'UTR 0.24 TCGA-BR-8589-01 19 39691489 39691489 G A NCCRP1 3'UTR 0.42 TCGA-BR-8589-01 19 39805078 39805078 A C LRFN1 Missense_Mutation p.L300R 0.36 deleterious(0) probably_damaging(0.986) TCGA-BR-8589-01 19 40580261 40580261 A C ZNF780A 3'UTR 0.24 TCGA-BR-8589-01 19 42479813 42479813 T G ATP1A3 Missense_Mutation p.N757T 0.22 deleterious(0) probably_damaging(0.986) TCGA-BR-8589-01 19 42480634 42480634 G A ATP1A3 Silent p.T689T 0.31 TCGA-BR-8589-01 19 43098046 43098046 A C CEACAM8 Missense_Mutation p.L24R 0.24 deleterious(0) probably_damaging(0.998) TCGA-BR-8589-01 19 43268119 43268119 C T PSG8 Missense_Mutation p.G127R 0.12 tolerated(1) benign(0.002) TCGA-BR-8589-01 19 43371797 43371797 T C PSG1 3'UTR 0.14 TCGA-BR-8589-01 19 43411807 43411807 A C PSG6 Missense_Mutation p.N302K 0.03 tolerated(0.35) probably_damaging(0.955) TCGA-BR-8589-01 19 4345893 4345893 A C MPND Missense_Mutation p.K149T 0.33 deleterious(0) possibly_damaging(0.821) TCGA-BR-8589-01 19 44050801 44050801 T C XRCC1 Missense_Mutation p.K458E 0.08 tolerated(0.48) benign(0.059) TCGA-BR-8589-01 19 4409730 4409730 T G CHAF1A Missense_Mutation p.F312V 0.15 tolerated(0.23) unknown(0) TCGA-BR-8589-01 19 44127406 44127406 T G CADM4 3'UTR 0.15 TCGA-BR-8589-01 19 44571741 44571741 A G ZNF223 3'UTR 0.33 TCGA-BR-8589-01 19 44611504 44611504 A C ZNF224 Missense_Mutation p.E397D 0.33 deleterious(0) possibly_damaging(0.459) TCGA-BR-8589-01 19 47951490 47951490 T A SLC8A2 Splice_Site p.X447_splice 0.17 TCGA-BR-8589-01 19 47960262 47960262 T A SLC8A2 Missense_Mutation p.E422V 0.22 deleterious(0.01) benign(0.253) TCGA-BR-8589-01 19 47991407 47991407 A G NAPA 3'UTR 0.25 TCGA-BR-8589-01 19 48608695 48608695 T G PLA2G4C Intron 0.24 TCGA-BR-8589-01 19 50951573 50951573 A C MYBPC2 Missense_Mutation p.K466N 0.29 tolerated(1) benign(0.119) TCGA-BR-8589-01 19 51129247 51129247 A C SYT3 Missense_Mutation p.F437V 0.10 deleterious(0) probably_damaging(0.99) TCGA-BR-8589-01 19 51140563 51140563 A C SYT3 Missense_Mutation p.F36V 0.22 tolerated(0.06) benign(0) TCGA-BR-8589-01 19 51361465 51361465 T C KLK3 Silent p.P129P 0.19 TCGA-BR-8589-01 19 51520422 51520422 G A KLK10 Silent p.C71C 0.38 TCGA-BR-8589-01 19 51742771 51742771 A G CD33 Splice_Site p.X309_splice 0.30 TCGA-BR-8589-01 19 52825169 52825169 A T ZNF480 Missense_Mutation p.Q222H 0.06 deleterious(0.02) possibly_damaging(0.728) TCGA-BR-8589-01 19 53454176 53454176 A C ZNF816 Silent p.T284T 0.12 TCGA-BR-8589-01 19 53793027 53793027 A C BIRC8 Missense_Mutation p.F201V 0.29 deleterious(0) probably_damaging(0.994) TCGA-BR-8589-01 19 54079977 54079977 A C ZNF331 Missense_Mutation p.S55R 0.20 tolerated(0.16) benign(0.023) TCGA-BR-8589-01 19 54823827 54823827 A G LILRA5 Missense_Mutation p.L23P 0.17 deleterious(0) probably_damaging(0.996) TCGA-BR-8589-01 19 55421419 55421419 T G NCR1 Missense_Mutation p.F226V 0.08 tolerated(0.54) benign(0.028) TCGA-BR-8589-01 19 55451541 55451541 T C NLRP7 Missense_Mutation p.S216G 0.32 tolerated(0.15) benign(0.05) TCGA-BR-8589-01 19 55453089 55453089 A G NLRP7 5'UTR 0.30 TCGA-BR-8589-01 19 55686273 55686273 T G SYT5 Missense_Mutation p.K268T 0.17 deleterious(0) probably_damaging(0.984) TCGA-BR-8589-01 19 55800909 55800909 A T BRSK1 Nonsense_Mutation p.R127* 0.12 TCGA-BR-8589-01 19 55993985 55993985 C G ZNF628 Missense_Mutation p.D475E 0.15 tolerated(0.33) probably_damaging(0.971) TCGA-BR-8589-01 19 56249468 56249468 C G NLRP9 Missense_Mutation p.E91D 0.12 tolerated(0.15) probably_damaging(0.997) TCGA-BR-8589-01 19 56249481 56249481 T G NLRP9 Missense_Mutation p.K87T 0.11 tolerated(0.05) probably_damaging(1) TCGA-BR-8589-01 19 57036399 57036399 A G ZNF471 Silent p.K321K 0.10 TCGA-BR-8589-01 19 57723710 57723710 G A ZNF264 Silent p.K415K 0.18 TCGA-BR-8589-01 19 57909914 57909914 G T ZNF548 Nonsense_Mutation p.E99* 0.19 TCGA-BR-8589-01 19 57985254 57985254 T C ZNF772 Silent p.R286R 0.28 TCGA-BR-8589-01 19 58059222 58059222 T G ZNF550 Missense_Mutation p.E89D 0.26 tolerated(1) benign(0.003) TCGA-BR-8589-01 19 58067709 58067709 T G ZNF550 Missense_Mutation p.K6T 0.26 deleterious(0.01) benign(0.118) TCGA-BR-8589-01 19 58117644 58117644 A G ZNF530 Missense_Mutation p.S251G 0.09 tolerated(0.3) benign(0.113) TCGA-BR-8589-01 19 58213775 58213775 C A ZNF154 Missense_Mutation p.R181I 0.35 tolerated(0.15) probably_damaging(0.952) TCGA-BR-8589-01 19 58597553 58597553 T C ZSCAN18 Missense_Mutation p.S332G 0.06 tolerated(0.72) benign(0.002) TCGA-BR-8589-01 19 59057202 59057202 G A TRIM28 Silent p.E175E 0.11 TCGA-BR-8589-01 19 6772985 6772985 A C VAV1 Missense_Mutation p.N56T 0.24 deleterious(0) probably_damaging(0.963) TCGA-BR-8589-01 19 7509198 7509198 G A ARHGEF18 Missense_Mutation p.R302H 0.33 tolerated(0.06) benign(0.117) TCGA-BR-8589-01 19 7742562 7742562 T G C19orf59 Missense_Mutation p.F45C 0.17 deleterious(0.02) possibly_damaging(0.629) TCGA-BR-8589-01 19 8127154 8127154 T G CCL25 3'UTR 0.10 TCGA-BR-8589-01 19 9063622 9063622 A C MUC16 Missense_Mutation p.S7942A 0.27 unknown(0) TCGA-BR-8589-01 19 9073199 9073199 T C MUC16 Silent p.A4749A 0.10 TCGA-BR-8589-01 19 9076652 9076652 A G MUC16 Silent p.T3598T 0.33 TCGA-BR-8589-01 19 9296924 9296924 C T OR7D2 Missense_Mutation p.S156F 0.05 deleterious_low_confidence(0.01) probably_damaging(0.988) TCGA-BR-8589-01 19 9406765 9406765 T G ZNF699 Missense_Mutation p.K439Q 0.06 deleterious(0.01) possibly_damaging(0.602) TCGA-BR-8589-01 19 9578937 9578937 A G ZNF560 Missense_Mutation p.L229P 0.14 tolerated(0.05) possibly_damaging(0.902) TCGA-BR-8589-01 1 109444457 109444457 A C GPSM2 Missense_Mutation p.E281D 0.13 deleterious(0.01) probably_damaging(0.964) TCGA-BR-8589-01 1 111060063 111060063 A G KCNA10 Silent p.I449I 0.24 TCGA-BR-8589-01 1 11298633 11298633 A C MTOR Missense_Mutation p.F610V 0.11 deleterious(0) possibly_damaging(0.45) TCGA-BR-8589-01 1 11303171 11303171 T G MTOR Missense_Mutation p.K471T 0.28 tolerated(0.1) benign(0.056) TCGA-BR-8589-01 1 113084544 113084544 T G ST7L Intron 0.07 TCGA-BR-8589-01 1 113120988 113120988 T G ST7L Missense_Mutation p.K374T 0.18 deleterious(0) probably_damaging(0.999) TCGA-BR-8589-01 1 115418757 115418757 A C SYCP1 Missense_Mutation p.K242T 0.19 deleterious(0) probably_damaging(1) TCGA-BR-8589-01 1 11736991 11736991 T C MAD2L2 Silent p.K82K 0.10 TCGA-BR-8589-01 1 117509665 117509665 A G PTGFRN Missense_Mutation p.K591R 0.26 tolerated(0.16) possibly_damaging(0.583) TCGA-BR-8589-01 1 118571009 118571009 T G SPAG17 Missense_Mutation p.E1206D 0.26 tolerated(0.38) possibly_damaging(0.7) TCGA-BR-8589-01 1 118629317 118629317 C T SPAG17 Missense_Mutation p.A530T 0.22 tolerated(0.11) probably_damaging(0.976) TCGA-BR-8589-01 1 12313878 12313878 T G VPS13D Missense_Mutation p.L222V 0.25 possibly_damaging(0.851) TCGA-BR-8589-01 1 12884956 12884956 A G PRAMEF11 Silent p.T385T 0.13 TCGA-BR-8589-01 1 13365910 13365910 A C PRAMEF5 Missense_Mutation p.E118D 0.29 deleterious(0.02) possibly_damaging(0.466) TCGA-BR-8589-01 1 144922549 144922549 G C PDE4DIP Silent p.L286L 0.12 TCGA-BR-8589-01 1 144952201 144952201 T G PDE4DIP Missense_Mutation p.K173T 0.05 deleterious(0.01) possibly_damaging(0.502) TCGA-BR-8589-01 1 145297634 145297634 A T NBPF10 Missense_Mutation p.E170V 0.06 probably_damaging(0.979) TCGA-BR-8589-01 1 145441019 145441019 A T TXNIP Missense_Mutation p.E369V 0.26 deleterious(0) benign(0.254) TCGA-BR-8589-01 1 145748376 145748376 T G PDZK1 Silent p.T83T 0.12 TCGA-BR-8589-01 1 146680369 146680369 T C FMO5 Intron 0.19 TCGA-BR-8589-01 1 148594490 148594490 A C NBPF15 Missense_Mutation p.Q621H 0.14 deleterious(0.01) possibly_damaging(0.738) TCGA-BR-8589-01 1 150128276 150128276 A C PLEKHO1 Missense_Mutation p.N65T 0.04 tolerated(0.13) benign(0.006) TCGA-BR-8589-01 1 150443335 150443335 T C RPRD2 Silent p.T637T 0.17 TCGA-BR-8589-01 1 151090836 151090836 A C GABPB2 3'UTR 0.33 TCGA-BR-8589-01 1 151384138 151384138 T G POGZ Missense_Mutation p.N630T 0.30 deleterious(0.01) probably_damaging(0.965) TCGA-BR-8589-01 1 152059288 152059288 T G TCHHL1 Missense_Mutation p.E290D 0.24 tolerated(0.28) benign(0.084) TCGA-BR-8589-01 1 152278844 152278844 T A FLG Missense_Mutation p.T2840S 0.12 benign(0) TCGA-BR-8589-01 1 152281847 152281847 A G FLG Missense_Mutation p.S1839P 0.04 benign(0.307) TCGA-BR-8589-01 1 152283117 152283117 T C FLG Silent p.Q1415Q 0.24 TCGA-BR-8589-01 1 153012624 153012624 A C SPRR2D Missense_Mutation p.C67G 0.26 tolerated_low_confidence(0.21) unknown(0) TCGA-BR-8589-01 1 154561054 154561054 T C ADAR Missense_Mutation p.K953R 0.23 tolerated(0.18) benign(0.056) TCGA-BR-8589-01 1 155448496 155448496 A C ASH1L Missense_Mutation p.S1389A 0.34 deleterious_low_confidence(0.02) probably_damaging(0.986) TCGA-BR-8589-01 1 155450488 155450488 T C ASH1L Missense_Mutation p.R725G 0.16 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-BR-8589-01 1 159842746 159842746 A G CCDC19 Missense_Mutation p.L522P 0.10 deleterious(0) probably_damaging(0.959) TCGA-BR-8589-01 1 160168757 160168757 T G CASQ1 Missense_Mutation p.L300V 0.21 deleterious(0.01) probably_damaging(0.977) TCGA-BR-8589-01 1 160456403 160456403 A C SLAMF6 3'UTR 0.28 TCGA-BR-8589-01 1 161969998 161969998 A C OLFML2B Missense_Mutation p.L285R 0.11 tolerated(0.6) benign(0.019) TCGA-BR-8589-01 1 167823637 167823637 T C ADCY10 Silent p.Q754Q 0.30 TCGA-BR-8589-01 1 168550314 168550314 A G XCL1 Silent p.K67K 0.20 TCGA-BR-8589-01 1 16918430 16918430 T C NBPF1 Silent p.A29A 0.04 TCGA-BR-8589-01 1 169510764 169510764 T C F5 Silent p.P1188P 0.27 TCGA-BR-8589-01 1 169511737 169511737 T G F5 Missense_Mutation p.K864T 0.11 tolerated(0.07) benign(0.061) TCGA-BR-8589-01 1 171086467 171086467 A C FMO3 Missense_Mutation p.K495T 0.22 deleterious(0.01) probably_damaging(0.925) TCGA-BR-8589-01 1 173503803 173503803 A G SLC9C2 Silent p.T598T 0.15 TCGA-BR-8589-01 1 17666206 17666206 A G PADI4 Missense_Mutation p.T184A 0.20 deleterious(0.01) possibly_damaging(0.876) TCGA-BR-8589-01 1 178745843 178745843 T C RALGPS2 5'UTR 0.27 TCGA-BR-8589-01 1 178834562 178834562 T G ANGPTL1 Missense_Mutation p.K117T 0.31 deleterious(0) probably_damaging(0.992) TCGA-BR-8589-01 1 179089374 179089374 T G ABL2 Missense_Mutation p.E332D 0.12 deleterious(0) benign(0.008) TCGA-BR-8589-01 1 179095648 179095648 T C ABL2 Missense_Mutation p.E184G 0.07 deleterious(0) probably_damaging(1) TCGA-BR-8589-01 1 179304702 179304702 T C SOAT1 Missense_Mutation p.L80P 0.18 deleterious(0.05) probably_damaging(0.966) TCGA-BR-8589-01 1 182355421 182355421 A G GLUL Missense_Mutation p.W149R 0.21 deleterious(0) probably_damaging(0.998) TCGA-BR-8589-01 1 182572397 182572397 T C RGS16 Missense_Mutation p.K41R 0.13 tolerated(0.21) benign(0.021) TCGA-BR-8589-01 1 182829162 182829162 A C DHX9 Missense_Mutation p.K392T 0.15 tolerated(0.38) benign(0.047) TCGA-BR-8589-01 1 186643498 186643498 G A PTGS2 Missense_Mutation p.S601L 0.13 deleterious_low_confidence(0.01) benign(0.158) TCGA-BR-8589-01 1 19593765 19593765 A C AKR7L 3'UTR 0.10 TCGA-BR-8589-01 1 197890706 197890706 A C LHX9 Missense_Mutation p.N217T 0.16 tolerated(0.11) benign(0.266) TCGA-BR-8589-01 1 200822487 200822487 A C CAMSAP2 Missense_Mutation p.K1229N 0.14 deleterious(0.03) possibly_damaging(0.464) TCGA-BR-8589-01 1 201355652 201355652 C T LAD1 Silent p.P279P 0.18 TCGA-BR-8589-01 1 201751840 201751840 A T NAV1 Missense_Mutation p.T734S 0.19 deleterious(0) probably_damaging(0.999) TCGA-BR-8589-01 1 202287259 202287259 T A LGR6 Missense_Mutation p.L610M 0.27 deleterious(0) probably_damaging(0.976) TCGA-BR-8589-01 1 203452402 203452402 T C PRELP Silent p.T30T 0.15 TCGA-BR-8589-01 1 203741246 203741246 T A LAX1 Missense_Mutation p.S121T 0.16 deleterious(0.01) probably_damaging(0.953) TCGA-BR-8589-01 1 204587213 204587213 A G LRRN2 Silent p.A636A 0.14 TCGA-BR-8589-01 1 207780607 207780607 T G CR1 Missense_Mutation p.I1941S 0.18 deleterious(0.01) possibly_damaging(0.86) TCGA-BR-8589-01 1 210415701 210415701 T G SERTAD4 3'UTR 0.26 TCGA-BR-8589-01 1 212161319 212161319 A G INTS7 Silent p.T302T 0.20 TCGA-BR-8589-01 1 214705946 214705946 T G PTPN14 Intron 0.14 TCGA-BR-8589-01 1 215972273 215972275 CTT - USH2A In_Frame_Del p.E3311del 0.27 TCGA-BR-8589-01 1 216595645 216595645 A C USH2A Missense_Mutation p.F12V 0.29 benign(0.046) TCGA-BR-8589-01 1 220970082 220970082 T G MARC1 Missense_Mutation p.F183V 0.33 deleterious(0) benign(0.231) TCGA-BR-8589-01 1 220978447 220978447 T C MARC1 Silent p.A269A 0.24 TCGA-BR-8589-01 1 222806483 222806483 T C MIA3 Silent p.I1123I 0.23 TCGA-BR-8589-01 1 226455692 226455692 A C LIN9 Missense_Mutation p.L277R 0.12 deleterious(0) probably_damaging(0.99) TCGA-BR-8589-01 1 229771360 229771360 T C URB2 Missense_Mutation p.C334R 0.12 deleterious(0) probably_damaging(0.916) TCGA-BR-8589-01 1 229773272 229773272 T G URB2 Missense_Mutation p.F971C 0.17 deleterious(0) probably_damaging(0.972) TCGA-BR-8589-01 1 230486768 230486768 T C PGBD5 Missense_Mutation p.K208R 0.13 tolerated(0.19) benign(0.372) TCGA-BR-8589-01 1 232581415 232581415 A G SIPA1L2 Silent p.T1071T 0.27 TCGA-BR-8589-01 1 233136103 233136103 T C PCNXL2 Missense_Mutation p.E1759G 0.18 deleterious(0) probably_damaging(0.985) TCGA-BR-8589-01 1 234452387 234452387 A C SLC35F3 Missense_Mutation p.M290L 0.11 tolerated(0.32) benign(0.029) TCGA-BR-8589-01 1 234541725 234541725 T G TARBP1 Missense_Mutation p.S1305R 0.33 tolerated(0.57) benign(0) TCGA-BR-8589-01 1 235884124 235884124 T A LYST Missense_Mutation p.N3133Y 0.10 deleterious(0.01) benign(0.323) TCGA-BR-8589-01 1 235993568 235993568 T G LYST Silent p.R50R 0.11 TCGA-BR-8589-01 1 236906233 236906233 A G ACTN2 Missense_Mutation p.E382G 0.15 deleterious(0) probably_damaging(1) TCGA-BR-8589-01 1 236914899 236914899 A T ACTN2 Missense_Mutation p.S596C 0.28 tolerated(0.07) benign(0.197) TCGA-BR-8589-01 1 237754244 237754244 A T RYR2 Missense_Mutation p.N1371I 0.25 benign(0.1) TCGA-BR-8589-01 1 237777619 237777619 G A RYR2 Missense_Mutation p.E1731K 0.26 benign(0.021) TCGA-BR-8589-01 1 237806735 237806735 A T RYR2 Missense_Mutation p.T2444S 0.27 benign(0.001) TCGA-BR-8589-01 1 240071166 240071166 T A CHRM3 Missense_Mutation p.L139M 0.19 deleterious(0.03) possibly_damaging(0.721) TCGA-BR-8589-01 1 244587330 244587330 A C ADSS Missense_Mutation p.V169G 0.15 deleterious(0.02) probably_damaging(0.991) TCGA-BR-8589-01 1 244724442 244724442 T G C1orf101 Missense_Mutation p.F501C 0.26 deleterious(0) probably_damaging(0.922) TCGA-BR-8589-01 1 24727880 24727880 T G STPG1 5'UTR 0.11 TCGA-BR-8589-01 1 247588114 247588114 A G NLRP3 Missense_Mutation p.S457G 0.11 tolerated(0.26) benign(0.001) TCGA-BR-8589-01 1 248004777 248004777 C T OR11L1 Missense_Mutation p.C141Y 0.16 deleterious(0.03) benign(0.423) TCGA-BR-8589-01 1 248308778 248308778 C T OR2M5 Missense_Mutation p.S110F 0.04 deleterious(0) benign(0.243) TCGA-BR-8589-01 1 248402855 248402855 T C OR2M4 Missense_Mutation p.F209L 0.28 tolerated(0.74) benign(0.075) TCGA-BR-8589-01 1 248685651 248685651 A G OR2G6 Missense_Mutation p.Q235R 0.24 tolerated(1) benign(0.001) TCGA-BR-8589-01 1 26752823 26752823 C T LIN28A Silent p.S168S 0.25 TCGA-BR-8589-01 1 26881043 26881043 A C RPS6KA1 Intron 0.27 TCGA-BR-8589-01 1 27105610 27105610 C T ARID1A Nonsense_Mutation p.Q1741* 0.16 TCGA-BR-8589-01 1 27949577 27949577 T A FGR Missense_Mutation p.E102V 0.29 deleterious(0) probably_damaging(1) TCGA-BR-8589-01 1 28148897 28148897 C T STX12 3'UTR 0.11 TCGA-BR-8589-01 1 33956645 33956645 A C ZSCAN20 Missense_Mutation p.S263R 0.16 tolerated(0.05) benign(0.002) TCGA-BR-8589-01 1 35453121 35453121 A C ZMYM6 Missense_Mutation p.F1188V 0.13 tolerated_low_confidence(0.31) benign(0.002) TCGA-BR-8589-01 1 35847321 35847321 A G ZMYM4 Missense_Mutation p.K511E 0.17 deleterious(0.04) probably_damaging(0.975) TCGA-BR-8589-01 1 36552352 36552352 A C TEKT2 Missense_Mutation p.K179T 0.09 deleterious(0) probably_damaging(1) TCGA-BR-8589-01 1 37337949 37337949 A G GRIK3 Missense_Mutation p.L191P 0.16 deleterious(0) probably_damaging(1) TCGA-BR-8589-01 1 38226871 38226871 A C EPHA10 Intron 0.34 TCGA-BR-8589-01 1 38328033 38328033 T G INPP5B Missense_Mutation p.K899T 0.11 deleterious(0) possibly_damaging(0.784) TCGA-BR-8589-01 1 40035289 40035289 T C PABPC4 Missense_Mutation p.E239G 0.26 deleterious(0.01) probably_damaging(0.938) TCGA-BR-8589-01 1 40717105 40717105 T G TMCO2 Missense_Mutation p.L130V 0.17 deleterious_low_confidence(0) possibly_damaging(0.801) TCGA-BR-8589-01 1 41012365 41012365 A C ZNF684 Missense_Mutation p.S124R 0.25 tolerated(0.42) benign(0.235) TCGA-BR-8589-01 1 42048511 42048511 T G HIVEP3 Missense_Mutation p.K653T 0.21 probably_damaging(0.997) TCGA-BR-8589-01 1 43906924 43906924 A C SZT2 Missense_Mutation p.T2405P 0.09 deleterious(0.05) probably_damaging(0.995) TCGA-BR-8589-01 1 45392349 45392349 C T EIF2B3 Missense_Mutation p.E173K 0.15 deleterious(0.01) benign(0.066) TCGA-BR-8589-01 1 45392393 45392393 A C EIF2B3 Missense_Mutation p.I158S 0.14 deleterious(0) benign(0.075) TCGA-BR-8589-01 1 45470426 45470426 T A HECTD3 Missense_Mutation p.K663M 0.21 tolerated(0.28) benign(0.063) TCGA-BR-8589-01 1 47534415 47534415 A C CYP4Z1 Missense_Mutation p.K100T 0.30 deleterious(0) probably_damaging(0.913) TCGA-BR-8589-01 1 50884941 50884941 T G DMRTA2 Missense_Mutation p.D342A 0.17 deleterious(0) possibly_damaging(0.465) TCGA-BR-8589-01 1 52703680 52703680 T C ZFYVE9 Silent p.F197F 0.26 TCGA-BR-8589-01 1 53493736 53493736 T C SCP2 Missense_Mutation p.L444P 0.18 deleterious(0) probably_damaging(1) TCGA-BR-8589-01 1 55279516 55279516 C T C1orf177 Silent p.F264F 0.14 TCGA-BR-8589-01 1 57173228 57173228 A T PRKAA2 Missense_Mutation p.S501C 0.28 deleterious(0.03) possibly_damaging(0.827) TCGA-BR-8589-01 1 60381714 60381714 A C CYP2J2 Missense_Mutation p.L90R 0.10 deleterious(0) possibly_damaging(0.756) TCGA-BR-8589-01 1 6145300 6145300 A G KCNAB2 Silent p.K139K 0.24 TCGA-BR-8589-01 1 61743219 61743219 A G NFIA Missense_Mutation p.Q241R 0.13 tolerated(0.32) benign(0.236) TCGA-BR-8589-01 1 62733982 62733982 T C KANK4 Silent p.E736E 0.15 TCGA-BR-8589-01 1 64036736 64036736 A C EFCAB7 Missense_Mutation p.K584N 0.05 deleterious(0) possibly_damaging(0.58) TCGA-BR-8589-01 1 64089088 64089088 T A PGM1 5'UTR 0.06 TCGA-BR-8589-01 1 66723184 66723184 A C PDE4B Intron 0.14 TCGA-BR-8589-01 1 67142729 67142729 T G SGIP1 Missense_Mutation p.I230S 0.20 tolerated_low_confidence(0.52) benign(0.01) TCGA-BR-8589-01 1 68512291 68512291 T C DIRAS3 Nonstop_Mutation p.*230Wext*15 0.22 TCGA-BR-8589-01 1 68912456 68912456 A C RPE65 Missense_Mutation p.F61C 0.10 deleterious(0) probably_damaging(1) TCGA-BR-8589-01 1 74621506 74621506 A T LRRIQ3 Silent p.T206T 0.31 TCGA-BR-8589-01 1 809844 809844 T G FAM41C 5'Flank 0.27 TCGA-BR-8589-01 1 82445580 82445580 T G LPHN2 Missense_Mutation p.L1000V 0.22 tolerated(0.12) benign(0.253) TCGA-BR-8589-01 1 84335548 84335548 A C TTLL7 3'UTR 0.30 TCGA-BR-8589-01 1 84387044 84387044 T G TTLL7 Missense_Mutation p.Q392H 0.18 deleterious(0) probably_damaging(0.957) TCGA-BR-8589-01 1 84412957 84412957 T A TTLL7 Missense_Mutation p.K119M 0.36 deleterious(0) probably_damaging(0.971) TCGA-BR-8589-01 1 85486830 85486830 A C MCOLN3 Missense_Mutation p.S484A 0.25 deleterious(0.01) benign(0.142) TCGA-BR-8589-01 1 85648753 85648753 T C SYDE2 Silent p.R524R 0.04 TCGA-BR-8589-01 1 9101786 9101786 A C SLC2A5 Intron 0.09 TCGA-BR-8589-01 1 91178170 91178170 T C BARHL2 Missense_Mutation p.K288R 0.10 deleterious(0.01) unknown(0) TCGA-BR-8589-01 1 93667544 93667544 A C CCDC18 Missense_Mutation p.K319T 0.12 deleterious(0) probably_damaging(0.984) TCGA-BR-8589-01 1 94998735 94998735 T G F3 Silent p.R168R 0.10 TCGA-BR-8589-01 1 95538478 95538478 A C ALG14 5'UTR 0.21 TCGA-BR-8589-01 1 99771358 99771358 A G LPPR4 Missense_Mutation p.N362D 0.14 tolerated(0.27) benign(0.021) TCGA-BR-8589-01 20 13140768 13140768 A G SPTLC3 Missense_Mutation p.M512V 0.33 tolerated(0.32) benign(0.076) TCGA-BR-8589-01 20 17410104 17410104 A C PCSK2 Missense_Mutation p.E215D 0.07 deleterious(0) probably_damaging(0.993) TCGA-BR-8589-01 20 17607995 17607995 A G RRBP1 Silent p.T554T 0.12 TCGA-BR-8589-01 20 18492909 18492909 T C SEC23B Missense_Mutation p.C88R 0.13 deleterious(0) probably_damaging(0.995) TCGA-BR-8589-01 20 18794785 18794785 C T SCP2D1 Missense_Mutation p.T109I 0.16 tolerated(0.28) benign(0.137) TCGA-BR-8589-01 20 20028462 20028462 T G CRNKL1 Missense_Mutation p.N351T 0.18 tolerated(0.05) benign(0.231) TCGA-BR-8589-01 20 20246234 20246234 A T C20orf26 Intron 0.23 TCGA-BR-8589-01 20 20527423 20527423 A C RALGAPA2 Silent p.G1070G 0.09 TCGA-BR-8589-01 20 21314715 21314715 G A XRN2 Splice_Site p.X376_splice 0.07 TCGA-BR-8589-01 20 2463832 2463832 A G ZNF343 Missense_Mutation p.L592P 0.11 deleterious(0) probably_damaging(0.998) TCGA-BR-8589-01 20 24989958 24989958 T A ACSS1 Missense_Mutation p.K613M 0.12 tolerated(0.08) possibly_damaging(0.687) TCGA-BR-8589-01 20 25478915 25478915 A G NINL Missense_Mutation p.L367P 0.17 deleterious(0) probably_damaging(0.999) TCGA-BR-8589-01 20 25478973 25478973 A T NINL Missense_Mutation p.F348I 0.18 deleterious(0) probably_damaging(0.969) TCGA-BR-8589-01 20 30053417 30053417 A C DEFB124 Silent p.T36T 0.12 TCGA-BR-8589-01 20 31022897 31022897 T G ASXL1 Silent p.T794T 0.15 TCGA-BR-8589-01 20 31627238 31627238 A G BPIFB6 Missense_Mutation p.K329R 0.15 deleterious(0.02) benign(0.29) TCGA-BR-8589-01 20 31671658 31671658 A C BPIFB4 Missense_Mutation p.S219R 0.10 deleterious(0.03) probably_damaging(0.999) TCGA-BR-8589-01 20 31825526 31825526 A C BPIFA1 Missense_Mutation p.Q3H 0.07 tolerated(0.12) benign(0.023) TCGA-BR-8589-01 20 31829261 31829261 T G BPIFA1 Missense_Mutation p.L218V 0.15 deleterious(0) probably_damaging(0.98) TCGA-BR-8589-01 20 3278685 3278685 A C C20orf194 Missense_Mutation p.F640L 0.11 deleterious(0.01) probably_damaging(0.997) TCGA-BR-8589-01 20 33859460 33859460 A C MMP24 Missense_Mutation p.E474D 0.33 tolerated(1) benign(0.001) TCGA-BR-8589-01 20 36147219 36147219 A T BLCAP 3'UTR 0.15 TCGA-BR-8589-01 20 36500394 36500394 G A CTNNBL1 Silent p.L557L 0.10 TCGA-BR-8589-01 20 36625208 36625208 T C TTI1 Missense_Mutation p.K981E 0.16 deleterious(0) probably_damaging(0.994) TCGA-BR-8589-01 20 3678698 3678698 C T SIGLEC1 Silent p.L623L 0.16 TCGA-BR-8589-01 20 36848101 36848101 A C KIAA1755 Silent p.A829A 0.13 TCGA-BR-8589-01 20 36936031 36936031 T A BPI Missense_Mutation p.S69T 0.17 tolerated(0.18) benign(0.097) TCGA-BR-8589-01 20 37464672 37464672 A C PPP1R16B Missense_Mutation p.K35T 0.33 deleterious(0) probably_damaging(1) TCGA-BR-8589-01 20 39316595 39316595 T C MAFB Missense_Mutation p.E299G 0.18 deleterious(0) probably_damaging(0.995) TCGA-BR-8589-01 20 42161533 42161533 T G L3MBTL1 Missense_Mutation p.F447V 0.14 deleterious(0) probably_damaging(0.999) TCGA-BR-8589-01 20 43726484 43726484 A C KCNS1 Missense_Mutation p.I310S 0.14 deleterious(0) probably_damaging(0.971) TCGA-BR-8589-01 20 43851860 43851860 A C SEMG2 Missense_Mutation p.Q529H 0.15 deleterious(0.03) unknown(0) TCGA-BR-8589-01 20 44519175 44519175 A C NEURL2 Missense_Mutation p.F152L 0.10 tolerated(0.65) benign(0.001) TCGA-BR-8589-01 20 44527644 44527644 T C PLTP Missense_Mutation p.E473G 0.11 deleterious(0.01) benign(0.211) TCGA-BR-8589-01 20 44815501 44815501 G A CDH22 Silent p.Y503Y 0.16 TCGA-BR-8589-01 20 4705711 4705711 T C PRND Missense_Mutation p.W172R 0.19 deleterious_low_confidence(0) possibly_damaging(0.86) TCGA-BR-8589-01 20 49366531 49366531 T G PARD6B Missense_Mutation p.L209V 0.08 deleterious(0) probably_damaging(0.999) TCGA-BR-8589-01 20 49621273 49621273 T C KCNG1 Missense_Mutation p.E282G 0.21 deleterious(0) probably_damaging(0.993) TCGA-BR-8589-01 20 50407880 50407880 T G SALL4 Missense_Mutation p.K381T 0.13 deleterious(0) benign(0.411) TCGA-BR-8589-01 20 52193563 52193563 A C ZNF217 Silent p.P580P 0.20 TCGA-BR-8589-01 20 52199470 52199470 A C ZNF217 5'UTR 0.12 TCGA-BR-8589-01 20 55093316 55093316 T G RTFDC1 Missense_Mutation p.F306V 0.07 deleterious(0) probably_damaging(0.999) TCGA-BR-8589-01 20 55758840 55758840 C T BMP7 Missense_Mutation p.R299H 0.21 deleterious(0.02) possibly_damaging(0.789) TCGA-BR-8589-01 20 55948568 55948568 A C RAE1 Missense_Mutation p.K227T 0.14 tolerated(0.4) benign(0.001) TCGA-BR-8589-01 20 57036043 57036043 T C APCDD1L Missense_Mutation p.S437G 0.07 deleterious(0) probably_damaging(0.995) TCGA-BR-8589-01 20 57393330 57393330 A C MIR298 RNA 0.36 TCGA-BR-8589-01 20 5924813 5924813 T G TRMT6 Missense_Mutation p.K151N 0.18 deleterious(0) possibly_damaging(0.733) TCGA-BR-8589-01 20 60913663 60913663 A C LAMA5 Missense_Mutation p.N493K 0.16 probably_damaging(0.954) TCGA-BR-8589-01 20 61576119 61576119 T G GID8 Missense_Mutation p.L181R 0.09 deleterious(0) probably_damaging(0.997) TCGA-BR-8589-01 21 10944689 10944689 T G TPTE Missense_Mutation p.K182T 0.12 tolerated(0.51) benign(0.038) TCGA-BR-8589-01 21 16337791 16337791 T C NRIP1 Missense_Mutation p.E908G 0.19 deleterious(0.02) benign(0.398) TCGA-BR-8589-01 21 31023581 31023581 T C GRIK1 Missense_Mutation p.R271G 0.16 deleterious(0) possibly_damaging(0.795) TCGA-BR-8589-01 21 32410734 32410734 C T KRTAP19-8 Missense_Mutation p.G10D 0.22 deleterious_low_confidence(0) unknown(0) TCGA-BR-8589-01 21 40777883 40777883 T C LCA5L Silent p.G646G 0.14 TCGA-BR-8589-01 21 40778399 40778399 T G LCA5L Missense_Mutation p.E474D 0.08 tolerated(0.21) benign(0.002) TCGA-BR-8589-01 21 43547856 43547856 T A UMODL1 Missense_Mutation p.I1330N 0.20 deleterious(0) possibly_damaging(0.839) TCGA-BR-8589-01 21 44151886 44151886 T G PDE9A Missense_Mutation p.V90G 0.11 tolerated(0.56) benign(0) TCGA-BR-8589-01 21 45499968 45499968 G A TRAPPC10 Silent p.Q561Q 0.25 TCGA-BR-8589-01 21 45837923 45837923 T G TRPM2 Missense_Mutation p.L1087R 0.12 deleterious(0) probably_damaging(0.968) TCGA-BR-8589-01 21 47810619 47810619 A C PCNT Missense_Mutation p.E1292A 0.29 possibly_damaging(0.636) TCGA-BR-8589-01 22 16287707 16287707 T G POTEH Missense_Mutation p.K60T 0.15 deleterious_low_confidence(0.01) unknown(0) TCGA-BR-8589-01 22 18028887 18028887 G A CECR2 Missense_Mutation p.A1283T 0.30 deleterious(0) probably_damaging(0.999) TCGA-BR-8589-01 22 19363240 19363240 T C HIRA Silent p.K563K 0.13 TCGA-BR-8589-01 22 20920938 20920938 A G MED15 Missense_Mutation p.Q292R 0.12 tolerated_low_confidence(0.31) unknown(0) TCGA-BR-8589-01 22 21384460 21384460 T G SLC7A4 Missense_Mutation p.E388A 0.10 tolerated(0.08) possibly_damaging(0.791) TCGA-BR-8589-01 22 23040624 23040624 T G IGLV2-23 Silent p.T24T 0.12 TCGA-BR-8589-01 22 23615951 23615951 A C BCR Missense_Mutation p.K702T 0.12 tolerated(0.13) possibly_damaging(0.546) TCGA-BR-8589-01 22 26423661 26423661 A C MYO18B Intron 0.57 TCGA-BR-8589-01 22 29838005 29838005 T C RFPL1 Missense_Mutation p.F283S 0.05 deleterious(0) probably_damaging(0.991) TCGA-BR-8589-01 22 29886668 29886668 A G NEFH Silent p.E1013E 0.13 TCGA-BR-8589-01 22 30772518 30772518 A T CCDC157 Silent p.P681P 0.51 TCGA-BR-8589-01 22 39908397 39908397 T C MIEF1 Silent p.A161A 0.09 TCGA-BR-8589-01 22 42609755 42609755 T C TCF20 Silent p.L519L 0.14 TCGA-BR-8589-01 22 46860029 46860029 A C CELSR1 Missense_Mutation p.V1253G 0.53 deleterious(0.02) benign(0.212) TCGA-BR-8589-01 22 50857310 50857310 T A PPP6R2 Silent p.A211A 0.28 TCGA-BR-8589-01 2 100015285 100015285 A C EIF5B Missense_Mutation p.E1156D 0.14 possibly_damaging(0.542) TCGA-BR-8589-01 2 100217911 100217911 A C AFF3 Missense_Mutation p.F478V 0.39 tolerated(0.45) benign(0.046) TCGA-BR-8589-01 2 10269377 10269377 A C RRM2 Missense_Mutation p.N405T 0.26 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BR-8589-01 2 107073515 107073515 T G RGPD3 Missense_Mutation p.K106T 0.12 tolerated(0.21) benign(0.049) TCGA-BR-8589-01 2 108488388 108488388 A C RGPD4 Missense_Mutation p.N1310H 0.27 deleterious(0) probably_damaging(0.998) TCGA-BR-8589-01 2 109103051 109103051 A C GCC2 Missense_Mutation p.S1293R 0.34 tolerated(0.16) benign(0.005) TCGA-BR-8589-01 2 109116111 109116111 T C GCC2 Silent p.L1629L 0.08 TCGA-BR-8589-01 2 109546637 109546637 T G EDAR Missense_Mutation p.N38T 0.13 tolerated(0.06) probably_damaging(0.931) TCGA-BR-8589-01 2 113420645 113420645 T C SLC20A1 3'UTR 0.11 TCGA-BR-8589-01 2 127956986 127956986 T G CYP27C1 Missense_Mutation p.N173T 0.08 deleterious(0) probably_damaging(0.993) TCGA-BR-8589-01 2 128050327 128050327 T C ERCC3 Silent p.P110P 0.29 TCGA-BR-8589-01 2 128707874 128707874 T G SAP130 Missense_Mutation p.K870T 0.11 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BR-8589-01 2 131103502 131103502 A T IMP4 Missense_Mutation p.K197M 0.19 deleterious(0.05) benign(0.103) TCGA-BR-8589-01 2 136561695 136561695 T A LCT Missense_Mutation p.T1490S 0.13 deleterious(0) probably_damaging(0.999) TCGA-BR-8589-01 2 136579709 136579709 A T LCT Intron 0.09 TCGA-BR-8589-01 2 152423760 152423760 A C NEB Missense_Mutation p.N6026K 0.16 benign(0.34) TCGA-BR-8589-01 2 152520300 152520300 T G NEB Missense_Mutation p.K1842T 0.25 probably_damaging(0.993) TCGA-BR-8589-01 2 15607836 15607836 T A NBAS Missense_Mutation p.K657M 0.28 deleterious(0.01) possibly_damaging(0.625) TCGA-BR-8589-01 2 158177778 158177778 T G ERMN 3'UTR 0.23 TCGA-BR-8589-01 2 166210929 166210929 A C SCN2A Missense_Mutation p.K1049N 0.09 tolerated(0.11) benign(0.008) TCGA-BR-8589-01 2 166237231 166237231 A G SCN2A Missense_Mutation p.K1480E 0.10 deleterious(0) possibly_damaging(0.516) TCGA-BR-8589-01 2 166797624 166797624 A C TTC21B Missense_Mutation p.F208C 0.11 tolerated(0.07) benign(0.078) TCGA-BR-8589-01 2 166901752 166901752 T G SCN1A Missense_Mutation p.K488T 0.17 tolerated(0.26) possibly_damaging(0.699) TCGA-BR-8589-01 2 168104634 168104634 T G XIRP2 Silent p.T2244T 0.25 TCGA-BR-8589-01 2 168725911 168725911 A C B3GALT1 Missense_Mutation p.N121T 0.18 tolerated(0.63) benign(0.043) TCGA-BR-8589-01 2 170387195 170387195 A C FASTKD1 Missense_Mutation p.L782V 0.06 deleterious(0) probably_damaging(0.997) TCGA-BR-8589-01 2 170657518 170657518 A C SSB Missense_Mutation p.K16N 0.08 deleterious(0) probably_damaging(0.983) TCGA-BR-8589-01 2 178386063 178386063 T C AGPS Silent p.I588I 0.06 TCGA-BR-8589-01 2 179257153 179257153 A C OSBPL6 Missense_Mutation p.N846H 0.22 deleterious(0.01) benign(0.005) TCGA-BR-8589-01 2 179449266 179449266 A G TTN Missense_Mutation p.V21671A 0.15 TCGA-BR-8589-01 2 179452912 179452912 A - TTN Frame_Shift_Del p.D21075Ifs*7 0.11 TCGA-BR-8589-01 2 179455636 179455636 C T TTN Silent p.P20272P 0.28 TCGA-BR-8589-01 2 179528765 179528765 T C TTN Missense_Mutation p.K12114R 0.06 TCGA-BR-8589-01 2 179576069 179576069 T G TTN Missense_Mutation p.K9298N 0.28 TCGA-BR-8589-01 2 179577516 179577516 A C TTN Missense_Mutation p.F9079C 0.06 TCGA-BR-8589-01 2 179577970 179577970 T C TTN Missense_Mutation p.N8964S 0.16 TCGA-BR-8589-01 2 179595420 179595420 G T TTN Missense_Mutation p.P5947H 0.18 TCGA-BR-8589-01 2 179610355 179610355 T G TTN Intron 0.07 TCGA-BR-8589-01 2 179639750 179639750 A T TTN Missense_Mutation p.F2230I 0.10 TCGA-BR-8589-01 2 179641097 179641097 T G TTN Missense_Mutation p.T1832P 0.25 TCGA-BR-8589-01 2 180835492 180835492 T G CWC22 Missense_Mutation p.K344N 0.08 deleterious(0) probably_damaging(0.959) TCGA-BR-8589-01 2 182794355 182794355 T G SSFA2 3'UTR 0.25 TCGA-BR-8589-01 2 187693238 187693238 T G ZSWIM2 Missense_Mutation p.K459Q 0.08 tolerated(0.2) benign(0.047) TCGA-BR-8589-01 2 190554291 190554291 A C ANKAR Missense_Mutation p.I214L 0.27 deleterious(0.03) benign(0.269) TCGA-BR-8589-01 2 190554626 190554626 T G ANKAR Missense_Mutation p.F325L 0.16 tolerated(0.26) benign(0.012) TCGA-BR-8589-01 2 190585496 190585496 T G ANKAR Missense_Mutation p.F873C 0.11 deleterious(0) probably_damaging(0.976) TCGA-BR-8589-01 2 190719033 190719033 T C PMS1 Silent p.S345S 0.19 TCGA-BR-8589-01 2 190719376 190719376 A C PMS1 Missense_Mutation p.S460R 0.06 tolerated(0.29) benign(0.002) TCGA-BR-8589-01 2 196545252 196545252 G T SLC39A10 Silent p.V162V 0.22 TCGA-BR-8589-01 2 197712683 197712683 T G PGAP1 Missense_Mutation p.K647T 0.20 tolerated(0.18) possibly_damaging(0.722) TCGA-BR-8589-01 2 198641795 198641795 T G BOLL Missense_Mutation p.K100N 0.19 tolerated(0.11) benign(0.169) TCGA-BR-8589-01 2 202245793 202245793 T A TRAK2 Missense_Mutation p.S740C 0.15 deleterious(0) probably_damaging(0.943) TCGA-BR-8589-01 2 204291994 204291994 T G ABI2 Silent p.G449G 0.30 TCGA-BR-8589-01 2 20508339 20508339 A T PUM2 Silent p.T175T 0.08 TCGA-BR-8589-01 2 207621681 207621681 T A MDH1B Missense_Mutation p.K118N 0.11 tolerated(0.49) benign(0.067) TCGA-BR-8589-01 2 209179076 209179076 G A PIKFYVE Silent p.L585L 0.06 TCGA-BR-8589-01 2 21228452 21228452 A C APOB Missense_Mutation p.L3763R 0.30 possibly_damaging(0.786) TCGA-BR-8589-01 2 21235329 21235329 A C APOB Missense_Mutation p.L1471V 0.15 benign(0.007) TCGA-BR-8589-01 2 214794832 214794832 T C SPAG16 Missense_Mutation p.S455P 0.26 deleterious(0) probably_damaging(0.999) TCGA-BR-8589-01 2 218712817 218712817 T C TNS1 Missense_Mutation p.Q683R 0.10 tolerated(0.31) benign(0.097) TCGA-BR-8589-01 2 218713280 218713280 T C TNS1 Missense_Mutation p.S529G 0.09 tolerated(0.18) probably_damaging(0.989) TCGA-BR-8589-01 2 219029780 219029780 A C CXCR1 Missense_Mutation p.L52R 0.10 deleterious(0) probably_damaging(0.973) TCGA-BR-8589-01 2 219483332 219483332 A C PLCD4 Missense_Mutation p.N71T 0.20 tolerated(0.05) benign(0.165) TCGA-BR-8589-01 2 220101987 220101987 A G GLB1L Missense_Mutation p.F591S 0.11 tolerated(0.9) benign(0.001) TCGA-BR-8589-01 2 222428958 222428958 T A EPHA4 Missense_Mutation p.R106W 0.07 deleterious(0) probably_damaging(0.993) TCGA-BR-8589-01 2 228560750 228560750 G A SLC19A3 Missense_Mutation p.L343F 0.20 deleterious(0.05) probably_damaging(0.983) TCGA-BR-8589-01 2 228846499 228846499 G T SPHKAP Nonsense_Mutation p.C1679* 0.22 TCGA-BR-8589-01 2 228881411 228881411 A C SPHKAP Missense_Mutation p.L1387V 0.08 tolerated(0.5) benign(0.028) TCGA-BR-8589-01 2 230861562 230861562 T C FBXO36 Silent p.L101L 0.11 TCGA-BR-8589-01 2 230910769 230910769 A C SLC16A14 Missense_Mutation p.I358S 0.19 deleterious(0) probably_damaging(0.932) TCGA-BR-8589-01 2 234678235 234678235 A T UGT1A10 Intron 0.15 TCGA-BR-8589-01 2 239234574 239234574 A G TRAF3IP1 Missense_Mutation p.E106G 0.14 deleterious(0) possibly_damaging(0.758) TCGA-BR-8589-01 2 24118816 24118816 T G ATAD2B Missense_Mutation p.S81R 0.44 deleterious_low_confidence(0) possibly_damaging(0.829) TCGA-BR-8589-01 2 241992724 241992724 T G SNED1 Missense_Mutation p.S746R 0.26 deleterious(0.02) possibly_damaging(0.846) TCGA-BR-8589-01 2 26531746 26531746 T A GPR113 3'Flank 0.38 TCGA-BR-8589-01 2 26647191 26647191 A T DRC1 Missense_Mutation p.I137F 0.11 deleterious(0) probably_damaging(0.99) TCGA-BR-8589-01 2 26697508 26697508 T G OTOF Missense_Mutation p.K1054T 0.10 tolerated(0.27) possibly_damaging(0.721) TCGA-BR-8589-01 2 27165557 27165557 A C DPYSL5 Missense_Mutation p.K460T 0.17 deleterious(0.02) benign(0.275) TCGA-BR-8589-01 2 27804228 27804228 A C C2orf16 Missense_Mutation p.N1597H 0.22 tolerated(0.08) unknown(0) TCGA-BR-8589-01 2 29296021 29296021 G A C2orf71 Silent p.T369T 0.15 TCGA-BR-8589-01 2 29296170 29296170 G A C2orf71 Missense_Mutation p.R320C 0.21 tolerated(0.17) benign(0.028) TCGA-BR-8589-01 2 31483561 31483561 A C EHD3 Missense_Mutation p.M230L 0.16 tolerated(0.1) benign(0.016) TCGA-BR-8589-01 2 32828139 32828139 A C BIRC6 Missense_Mutation p.S4687R 0.21 probably_damaging(0.998) TCGA-BR-8589-01 2 39251221 39251221 T A SOS1 Missense_Mutation p.T378S 0.16 tolerated(0.87) benign(0.057) TCGA-BR-8589-01 2 43991482 43991482 T G PLEKHH2 Missense_Mutation p.L1425R 0.15 deleterious(0) possibly_damaging(0.465) TCGA-BR-8589-01 2 44531196 44531196 T A SLC3A1 Intron 0.21 TCGA-BR-8589-01 2 44571048 44571048 A C PREPL Missense_Mutation p.L151R 0.08 deleterious(0.02) probably_damaging(0.972) TCGA-BR-8589-01 2 46985924 46985924 A T SOCS5 Missense_Mutation p.E85D 0.08 tolerated_low_confidence(0.74) benign(0.002) TCGA-BR-8589-01 2 54531856 54531856 A G ACYP2 Missense_Mutation p.S73G 0.15 tolerated(0.09) benign(0.405) TCGA-BR-8589-01 2 55476576 55476576 T G MTIF2 Missense_Mutation p.E312D 0.33 tolerated(0.06) probably_damaging(0.999) TCGA-BR-8589-01 2 61508340 61508340 T G USP34 Missense_Mutation p.K1679T 0.17 deleterious(0) possibly_damaging(0.663) TCGA-BR-8589-01 2 64778718 64778718 T G AFTPH Missense_Mutation p.V37G 0.23 deleterious(0) probably_damaging(0.998) TCGA-BR-8589-01 2 73650099 73650099 T A ALMS1 Missense_Mutation p.L254Q 0.16 probably_damaging(0.999) TCGA-BR-8589-01 2 74757775 74757775 T C HTRA2 Missense_Mutation p.S180P 0.09 deleterious(0) probably_damaging(0.998) TCGA-BR-8589-01 2 74902419 74902419 T A SEMA4F Missense_Mutation p.L427Q 0.12 deleterious(0) probably_damaging(1) TCGA-BR-8589-01 2 89326844 89326844 G C IGKV3-11 Missense_Mutation p.Q57E 0.09 deleterious(0) probably_damaging(0.923) TCGA-BR-8589-01 2 90249236 90249236 A G IGKV1D-43 Silent p.K64K 0.24 TCGA-BR-8589-01 2 9498920 9498920 A T ASAP2 Missense_Mutation p.T455S 0.08 deleterious(0.01) probably_damaging(0.916) TCGA-BR-8589-01 2 9630264 9630264 A C ADAM17 3'UTR 0.14 TCGA-BR-8589-01 2 97474441 97474441 T G CNNM4 Missense_Mutation p.F698V 0.40 deleterious(0) probably_damaging(0.937) TCGA-BR-8589-01 2 98809455 98809455 A T VWA3B Missense_Mutation p.S521C 0.06 deleterious(0.01) possibly_damaging(0.895) TCGA-BR-8589-01 2 99681472 99681472 A C TSGA10 Missense_Mutation p.L445R 0.25 deleterious(0) probably_damaging(0.998) TCGA-BR-8589-01 3 100595371 100595371 T G ABI3BP Missense_Mutation p.T251P 0.28 deleterious(0) possibly_damaging(0.507) TCGA-BR-8589-01 3 100963575 100963575 T A IMPG2 Missense_Mutation p.S534C 0.13 deleterious(0.01) possibly_damaging(0.838) TCGA-BR-8589-01 3 10255072 10255072 A C IRAK2 Missense_Mutation p.K237T 0.22 deleterious(0) probably_damaging(1) TCGA-BR-8589-01 3 105378018 105378018 T A CBLB Silent p.P915P 0.20 TCGA-BR-8589-01 3 107097406 107097406 A C CCDC54 Missense_Mutation p.E324D 0.22 deleterious(0.05) probably_damaging(0.914) TCGA-BR-8589-01 3 113375311 113375311 T G KIAA2018 Missense_Mutation p.S1740R 0.16 benign(0.224) TCGA-BR-8589-01 3 118645003 118645003 A C IGSF11 Silent p.T175T 0.16 TCGA-BR-8589-01 3 118948756 118948756 G A B4GALT4 Missense_Mutation p.T64I 0.25 tolerated(0.17) benign(0.01) TCGA-BR-8589-01 3 119426380 119426380 C T MAATS1 Missense_Mutation p.H111Y 0.08 tolerated(0.12) benign(0.382) TCGA-BR-8589-01 3 121238762 121238762 T A POLQ Missense_Mutation p.K475M 0.12 deleterious(0) probably_damaging(0.969) TCGA-BR-8589-01 3 121340935 121340935 A C FBXO40 Missense_Mutation p.N220T 0.20 tolerated(0.4) benign(0.005) TCGA-BR-8589-01 3 121414777 121414777 T G GOLGB1 Missense_Mutation p.Q1531H 0.23 benign(0.346) TCGA-BR-8589-01 3 121415485 121415485 A G GOLGB1 Silent p.S1295S 0.12 TCGA-BR-8589-01 3 121573582 121573582 T C EAF2 Silent p.L84L 0.06 TCGA-BR-8589-01 3 122090532 122090532 A C CCDC58 Missense_Mutation p.L56R 0.06 deleterious(0) probably_damaging(0.975) TCGA-BR-8589-01 3 122418264 122418264 T C PARP14 Missense_Mutation p.L288P 0.55 deleterious(0.03) probably_damaging(0.935) TCGA-BR-8589-01 3 122418777 122418777 A C PARP14 Missense_Mutation p.K459T 0.25 deleterious(0.01) possibly_damaging(0.489) TCGA-BR-8589-01 3 125854444 125854444 T G ALDH1L1 Missense_Mutation p.K479T 0.17 deleterious(0.03) possibly_damaging(0.737) TCGA-BR-8589-01 3 128706568 128706568 T C KIAA1257 Silent p.K186K 0.14 TCGA-BR-8589-01 3 129195557 129195557 A G IFT122 Missense_Mutation p.T405A 0.20 deleterious(0.01) probably_damaging(0.961) TCGA-BR-8589-01 3 129233240 129233240 T A IFT122 Missense_Mutation p.L1050H 0.18 deleterious(0) probably_damaging(0.994) TCGA-BR-8589-01 3 129389315 129389315 A T TMCC1 Missense_Mutation p.S457T 0.12 tolerated(0.25) benign(0.038) TCGA-BR-8589-01 3 130286941 130286941 A C COL6A6 Missense_Mutation p.S632R 0.41 deleterious(0) probably_damaging(0.999) TCGA-BR-8589-01 3 132345663 132345663 T G ACAD11 Splice_Site p.X357_splice 0.07 TCGA-BR-8589-01 3 133339089 133339089 A G TOPBP1 Missense_Mutation p.L1094P 0.13 deleterious(0.04) benign(0.12) TCGA-BR-8589-01 3 133557075 133557075 G A RAB6B Missense_Mutation p.R144C 0.25 deleterious(0.02) possibly_damaging(0.704) TCGA-BR-8589-01 3 13427890 13427890 T G NUP210 Missense_Mutation p.E234D 0.25 tolerated(0.53) benign(0.028) TCGA-BR-8589-01 3 137942279 137942279 T G ARMC8 Silent p.T67T 0.22 TCGA-BR-8589-01 3 137964076 137964076 A G ARMC8 Intron 0.08 TCGA-BR-8589-01 3 140407025 140407025 G A TRIM42 Missense_Mutation p.G501R 0.06 tolerated(0.21) possibly_damaging(0.653) TCGA-BR-8589-01 3 142103387 142103387 A C XRN1 Missense_Mutation p.F827C 0.23 deleterious(0) probably_damaging(0.912) TCGA-BR-8589-01 3 142231116 142231116 T G ATR Missense_Mutation p.K1613T 0.08 tolerated(0.42) benign(0.001) TCGA-BR-8589-01 3 143214209 143214209 T C SLC9A9 Missense_Mutation p.I391V 0.13 tolerated(1) benign(0.438) TCGA-BR-8589-01 3 145790437 145790437 A C PLOD2 Missense_Mutation p.F587V 0.13 deleterious(0) benign(0.381) TCGA-BR-8589-01 3 14731604 14731604 A C C3orf20 Missense_Mutation p.K242N 0.07 deleterious(0.01) probably_damaging(0.923) TCGA-BR-8589-01 3 149220530 149220530 T G TM4SF4 3'UTR 0.08 TCGA-BR-8589-01 3 15116058 15116058 T G ZFYVE20 Missense_Mutation p.E529A 0.21 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-BR-8589-01 3 151165878 151165878 T G IGSF10 Silent p.R631R 0.08 TCGA-BR-8589-01 3 152132860 152132860 T C MBNL1 Missense_Mutation p.L102P 0.05 deleterious(0.03) probably_damaging(0.979) TCGA-BR-8589-01 3 156413677 156413677 A C TIPARP Missense_Mutation p.E370D 0.11 tolerated(0.18) benign(0.004) TCGA-BR-8589-01 3 159713282 159713282 T G IL12A Missense_Mutation p.L233R 0.23 deleterious(0) probably_damaging(1) TCGA-BR-8589-01 3 165548648 165548648 T G BCHE Silent p.G58G 0.06 TCGA-BR-8589-01 3 166958546 166958546 G T ZBBX 3'UTR 0.11 TCGA-BR-8589-01 3 167510376 167510376 A G SERPINI1 Splice_Site p.X161_splice 0.12 TCGA-BR-8589-01 3 169578490 169578490 A G LRRC31 Silent p.L116L 0.10 TCGA-BR-8589-01 3 170201299 170201299 A C SLC7A14 Missense_Mutation p.L307V 0.10 deleterious(0.05) possibly_damaging(0.467) TCGA-BR-8589-01 3 170797363 170797363 T C TNIK Missense_Mutation p.K1131R 0.33 tolerated(0.11) probably_damaging(0.996) TCGA-BR-8589-01 3 172533486 172533486 A C ECT2 Missense_Mutation p.K831N 0.13 deleterious(0.02) possibly_damaging(0.694) TCGA-BR-8589-01 3 172835109 172835109 T G SPATA16 Missense_Mutation p.E138A 0.18 deleterious(0) possibly_damaging(0.486) TCGA-BR-8589-01 3 178941911 178941911 T A PIK3CA Missense_Mutation p.F744I 0.48 deleterious(0) benign(0.005) TCGA-BR-8589-01 3 179525470 179525470 G A PEX5L Silent p.G556G 0.39 TCGA-BR-8589-01 3 182755192 182755192 A G MCCC1 Silent p.L470L 0.08 TCGA-BR-8589-01 3 183669329 183669329 A G ABCC5 Silent p.H948H 0.21 TCGA-BR-8589-01 3 184294690 184294690 A C EPHB3 Missense_Mutation p.E358A 0.08 deleterious(0.01) probably_damaging(0.941) TCGA-BR-8589-01 3 184297675 184297675 A C EPHB3 Missense_Mutation p.I709L 0.22 deleterious(0) probably_damaging(0.973) TCGA-BR-8589-01 3 185390359 185390359 A T IGF2BP2 Silent p.A390A 0.19 TCGA-BR-8589-01 3 185766624 185766624 T G ETV5 Missense_Mutation p.K446T 0.12 deleterious(0) probably_damaging(0.998) TCGA-BR-8589-01 3 186290034 186290034 T G DNAJB11 Silent p.A73A 0.25 TCGA-BR-8589-01 3 186839075 186839075 T A RPL39L Missense_Mutation p.K5M 0.05 deleterious(0) possibly_damaging(0.733) TCGA-BR-8589-01 3 186953433 186953433 T G MASP1 3'UTR 0.09 TCGA-BR-8589-01 3 189612355 189612355 T G TP63 3'UTR 0.21 TCGA-BR-8589-01 3 190167579 190167579 A G TMEM207 Missense_Mutation p.F7S 0.08 deleterious(0.01) possibly_damaging(0.714) TCGA-BR-8589-01 3 193156311 193156311 A C ATP13A4 Silent p.P875P 0.20 TCGA-BR-8589-01 3 195937536 195937536 G A ZDHHC19 Silent p.F73F 0.47 TCGA-BR-8589-01 3 20187855 20187855 T G KAT2B Silent p.V684V 0.10 TCGA-BR-8589-01 3 27297800 27297800 T G NEK10 Missense_Mutation p.I693L 0.18 deleterious(0.04) possibly_damaging(0.717) TCGA-BR-8589-01 3 2787211 2787211 A C CNTN4 Missense_Mutation p.K63T 0.26 tolerated(0.09) possibly_damaging(0.599) TCGA-BR-8589-01 3 28304858 28304858 T C CMC1 Silent p.S32S 0.12 TCGA-BR-8589-01 3 28368336 28368336 A T AZI2 Silent p.T251T 0.22 TCGA-BR-8589-01 3 30732958 30732958 A G TGFBR2 Missense_Mutation p.D549G 0.11 deleterious(0) probably_damaging(1) TCGA-BR-8589-01 3 31725256 31725256 T G OSBPL10 Missense_Mutation p.Q532H 0.10 deleterious(0) probably_damaging(1) TCGA-BR-8589-01 3 32860404 32860404 T A TRIM71 Missense_Mutation p.C278S 0.24 deleterious(0) probably_damaging(1) TCGA-BR-8589-01 3 33648173 33648173 T C CLASP2 Missense_Mutation p.K536R 0.32 tolerated(0.6) benign(0.006) TCGA-BR-8589-01 3 37368464 37368464 A C GOLGA4 Missense_Mutation p.K1718T 0.16 possibly_damaging(0.628) TCGA-BR-8589-01 3 38454461 38454461 T C XYLB Missense_Mutation p.L523P 0.22 deleterious(0) probably_damaging(0.946) TCGA-BR-8589-01 3 38835305 38835305 A G SCN10A Missense_Mutation p.F66S 0.09 deleterious(0) possibly_damaging(0.898) TCGA-BR-8589-01 3 38926878 38926878 T A SCN11A Missense_Mutation p.S989C 0.12 deleterious(0.01) probably_damaging(0.982) TCGA-BR-8589-01 3 38936103 38936103 A C SCN11A Missense_Mutation p.L919R 0.28 deleterious(0.01) probably_damaging(0.997) TCGA-BR-8589-01 3 38968335 38968335 T A SCN11A Silent p.R192R 0.28 TCGA-BR-8589-01 3 39452321 39452321 A T RPSA Missense_Mutation p.N110I 0.10 deleterious(0.01) probably_damaging(0.986) TCGA-BR-8589-01 3 40574022 40574022 A G ZNF621 Missense_Mutation p.Q254R 0.09 tolerated(0.23) benign(0.007) TCGA-BR-8589-01 3 41266097 41266097 G C CTNNB1 Missense_Mutation p.D32H 0.27 deleterious(0) probably_damaging(0.988) TCGA-BR-8589-01 3 42956217 42956217 A C ZNF662 Missense_Mutation p.K244Q 0.11 deleterious(0.02) benign(0.123) TCGA-BR-8589-01 3 44598528 44598528 T C ZKSCAN7 5'UTR 0.16 TCGA-BR-8589-01 3 44776252 44776252 A C ZNF501 Missense_Mutation p.K113N 0.27 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-BR-8589-01 3 45557745 45557745 A C LARS2 Missense_Mutation p.K674T 0.08 deleterious(0) possibly_damaging(0.665) TCGA-BR-8589-01 3 45811859 45811859 T A SLC6A20 Missense_Mutation p.S314C 0.13 deleterious(0) possibly_damaging(0.586) TCGA-BR-8589-01 3 47142946 47142946 A G SETD2 Splice_Site p.X1672_splice 0.24 TCGA-BR-8589-01 3 47890551 47890551 A T DHX30 Missense_Mutation p.S971C 0.10 deleterious(0) probably_damaging(0.976) TCGA-BR-8589-01 3 48699754 48699754 G A CELSR3 Missense_Mutation p.P105L 0.23 tolerated_low_confidence(0.19) benign(0.001) TCGA-BR-8589-01 3 48717555 48717555 A C NCKIPSD Missense_Mutation p.S400R 0.25 deleterious(0) probably_damaging(0.969) TCGA-BR-8589-01 3 49940444 49940444 G C MST1R Missense_Mutation p.A200G 0.30 tolerated(0.16) possibly_damaging(0.593) TCGA-BR-8589-01 3 50608706 50608706 C T HEMK1 Silent p.I57I 0.14 TCGA-BR-8589-01 3 51671359 51671359 T C RAD54L2 Missense_Mutation p.F508L 0.19 deleterious(0) probably_damaging(1) TCGA-BR-8589-01 3 51697390 51697390 A C RAD54L2 Missense_Mutation p.D1453A 0.14 tolerated_low_confidence(0.08) benign(0.034) TCGA-BR-8589-01 3 51969429 51969429 A G RRP9 Silent p.A300A 0.08 TCGA-BR-8589-01 3 52437539 52437539 A C BAP1 Missense_Mutation p.V541G 0.19 deleterious_low_confidence(0) possibly_damaging(0.451) TCGA-BR-8589-01 3 5246886 5246886 A C EDEM1 Missense_Mutation p.N393H 0.26 tolerated(0.15) benign(0.209) TCGA-BR-8589-01 3 52620677 52620677 A C PBRM1 Missense_Mutation p.F1026V 0.27 tolerated(0.08) possibly_damaging(0.504) TCGA-BR-8589-01 3 52780851 52780851 A G NEK4 Missense_Mutation p.S526P 0.27 deleterious(0.01) possibly_damaging(0.864) TCGA-BR-8589-01 3 53274289 53274289 C T TKT Missense_Mutation p.G139S 0.18 deleterious(0.04) probably_damaging(0.984) TCGA-BR-8589-01 3 58377558 58377558 T G PXK Missense_Mutation p.L200R 0.15 deleterious(0.02) possibly_damaging(0.908) TCGA-BR-8589-01 3 58519189 58519189 T A ACOX2 Missense_Mutation p.K189I 0.05 deleterious(0) probably_damaging(1) TCGA-BR-8589-01 3 69096977 69096977 A C TMF1 Missense_Mutation p.F293L 0.08 deleterious_low_confidence(0.02) probably_damaging(0.935) TCGA-BR-8589-01 3 74418407 74418407 A C CNTN3 Silent p.G293G 0.23 TCGA-BR-8589-01 3 78655933 78655933 T C ROBO1 Missense_Mutation p.N1565S 0.26 tolerated_low_confidence(0.29) benign(0.001) TCGA-BR-8589-01 3 78735060 78735060 A C ROBO1 Missense_Mutation p.L393R 0.58 deleterious(0) probably_damaging(0.999) TCGA-BR-8589-01 3 86028312 86028312 A G CADM2 Splice_Site p.X317_splice 0.24 TCGA-BR-8589-01 3 89176368 89176368 T G EPHA3 Missense_Mutation p.L33R 0.23 deleterious(0) probably_damaging(0.998) TCGA-BR-8589-01 3 93761872 93761872 T C ARL13B Missense_Mutation p.L271P 0.31 tolerated(0.05) benign(0.418) TCGA-BR-8589-01 3 97596378 97596378 A T CRYBG3 Nonsense_Mutation p.R166* 0.26 TCGA-BR-8589-01 3 97983357 97983357 T G OR5H6 Missense_Mutation p.L77V 0.26 deleterious(0.03) benign(0.091) TCGA-BR-8589-01 3 9975191 9975191 G A IL17RC Missense_Mutation p.D764N 0.38 tolerated(0.09) benign(0.021) TCGA-BR-8589-01 4 100232006 100232006 T G ADH1B Missense_Mutation p.K340T 0.08 deleterious(0.01) possibly_damaging(0.535) TCGA-BR-8589-01 4 100237376 100237376 T G ADH1B Missense_Mutation p.N115H 0.16 tolerated(0.55) benign(0.02) TCGA-BR-8589-01 4 100434221 100434221 A C C4orf17 5'UTR 0.29 TCGA-BR-8589-01 4 107846993 107846993 T C DKK2 Silent p.R112R 0.28 TCGA-BR-8589-01 4 110862293 110862293 A C EGF Silent p.R107R 0.25 TCGA-BR-8589-01 4 111482701 111482701 T G ENPEP Missense_Mutation p.L954R 0.21 tolerated(0.21) benign(0.022) TCGA-BR-8589-01 4 113108258 113108258 T G C4orf32 3'UTR 0.33 TCGA-BR-8589-01 4 114278039 114278039 A C ANK2 Missense_Mutation p.E2755D 0.30 benign(0.001) TCGA-BR-8589-01 4 119666127 119666127 T G SEC24D Missense_Mutation p.K599T 0.06 deleterious(0) possibly_damaging(0.705) TCGA-BR-8589-01 4 119951776 119951776 T G SYNPO2 Missense_Mutation p.F616V 0.26 tolerated(0.07) benign(0.135) TCGA-BR-8589-01 4 121957263 121957263 T G NDNF 3'UTR 0.11 TCGA-BR-8589-01 4 123091861 123091861 T G KIAA1109 Missense_Mutation p.L20R 0.34 probably_damaging(0.998) TCGA-BR-8589-01 4 123542014 123542014 A C IL21 Missense_Mutation p.N51K 0.36 tolerated(0.58) benign(0.03) TCGA-BR-8589-01 4 129767570 129767570 A G JADE1 Missense_Mutation p.D60G 0.17 deleterious(0) probably_damaging(1) TCGA-BR-8589-01 4 144468627 144468627 A G SMARCA5 Missense_Mutation p.I915V 0.06 tolerated(0.29) benign(0.063) TCGA-BR-8589-01 4 144918742 144918742 A T GYPB Missense_Mutation p.I74N 0.22 deleterious(0) benign(0.039) TCGA-BR-8589-01 4 145567789 145567789 C A HHIP 5'UTR 0.10 TCGA-BR-8589-01 4 149356384 149356384 A C NR3C2 Silent p.S543S 0.10 TCGA-BR-8589-01 4 154553945 154553945 A C KIAA0922 Missense_Mutation p.N1428T 0.26 tolerated(0.09) benign(0.043) TCGA-BR-8589-01 4 155243495 155243495 A T DCHS2 Silent p.V933V 0.21 TCGA-BR-8589-01 4 156135225 156135225 A G NPY2R Missense_Mutation p.K45R 0.28 tolerated(0.17) benign(0.002) TCGA-BR-8589-01 4 15826541 15826541 A G CD38 Missense_Mutation p.Q134R 0.15 tolerated(0.58) benign(0.07) TCGA-BR-8589-01 4 1670481 1670481 G A FAM53A 5'UTR 0.23 TCGA-BR-8589-01 4 1696553 1696553 A C SLBP Missense_Mutation p.L215R 0.05 deleterious(0.03) probably_damaging(0.937) TCGA-BR-8589-01 4 174254250 174254250 T G HMGB2 Missense_Mutation p.K89T 0.16 tolerated(0.39) benign(0.203) TCGA-BR-8589-01 4 175183927 175183927 A C FBXO8 Missense_Mutation p.L106R 0.24 tolerated(0.14) benign(0.027) TCGA-BR-8589-01 4 17586723 17586723 T A LAP3 Missense_Mutation p.L223H 0.09 deleterious(0) probably_damaging(0.957) TCGA-BR-8589-01 4 184938289 184938289 A C STOX2 Missense_Mutation p.N878T 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.754) TCGA-BR-8589-01 4 185012349 185012349 A T ENPP6 Missense_Mutation p.L435H 0.23 deleterious(0.01) benign(0.184) TCGA-BR-8589-01 4 25028556 25028556 A C LGI2 Missense_Mutation p.L92R 0.31 deleterious(0) possibly_damaging(0.715) TCGA-BR-8589-01 4 26430438 26430438 A C RBPJ Silent p.R295R 0.32 TCGA-BR-8589-01 4 265143 265143 A C ZNF732 Silent p.P501P 0.40 TCGA-BR-8589-01 4 38776650 38776650 A C TLR10 Missense_Mutation p.L188V 0.27 deleterious(0.03) probably_damaging(0.997) TCGA-BR-8589-01 4 39301996 39301996 T C RFC1 Silent p.G859G 0.12 TCGA-BR-8589-01 4 40439938 40439938 A G RBM47 Missense_Mutation p.S325P 0.20 tolerated(0.28) benign(0.134) TCGA-BR-8589-01 4 41748224 41748224 T G PHOX2B Missense_Mutation p.D182A 0.14 deleterious(0.01) unknown(0) TCGA-BR-8589-01 4 41984471 41984471 T G DCAF4L1 Missense_Mutation p.F221C 0.16 deleterious(0) probably_damaging(0.91) TCGA-BR-8589-01 4 47322225 47322225 T A GABRB1 Missense_Mutation p.S181R 0.21 deleterious(0) probably_damaging(0.997) TCGA-BR-8589-01 4 52861969 52861969 T G LRRC66 Missense_Mutation p.K407Q 0.11 tolerated(1) benign(0) TCGA-BR-8589-01 4 55962481 55962481 A G KDR Silent p.A881A 0.36 TCGA-BR-8589-01 4 70505259 70505259 T G UGT2A2 Missense_Mutation p.I34L 0.28 deleterious(0.01) benign(0.012) TCGA-BR-8589-01 4 71346711 71346711 T G MUC7 Missense_Mutation p.F84V 0.17 tolerated(0.47) possibly_damaging(0.765) TCGA-BR-8589-01 4 71655406 71655406 T G RUFY3 Intron 0.25 TCGA-BR-8589-01 4 72413427 72413427 C T SLC4A4 Missense_Mutation p.P895L 0.06 deleterious(0) probably_damaging(0.992) TCGA-BR-8589-01 4 75937967 75937967 A C PARM1 Missense_Mutation p.S126R 0.10 tolerated(0.11) benign(0.022) TCGA-BR-8589-01 4 76489614 76489614 A C C4orf26 Missense_Mutation p.E134D 0.09 tolerated_low_confidence(0.14) benign(0.388) TCGA-BR-8589-01 4 76532367 76532367 T C CDKL2 Missense_Mutation p.K181R 0.18 tolerated(0.24) benign(0.016) TCGA-BR-8589-01 4 76944543 76944543 C T CXCL10 Silent p.L14L 0.10 TCGA-BR-8589-01 4 77003337 77003337 A T ART3 Nonsense_Mutation p.R144* 0.25 TCGA-BR-8589-01 4 7774589 7774589 C T AFAP1 Silent p.L737L 0.12 TCGA-BR-8589-01 4 79308837 79308837 A C FRAS1 Missense_Mutation p.Q1319H 0.14 benign(0) TCGA-BR-8589-01 4 79369367 79369367 T C FRAS1 Silent p.T2057T 0.29 TCGA-BR-8589-01 4 80905052 80905052 C T ANTXR2 Missense_Mutation p.G387R 0.24 deleterious(0) probably_damaging(0.998) TCGA-BR-8589-01 4 82088337 82088337 T G PRKG2 Missense_Mutation p.K297T 0.13 deleterious(0) benign(0.184) TCGA-BR-8589-01 4 83552614 83552614 A C SCD5 Missense_Mutation p.F287V 0.30 deleterious(0.05) benign(0.091) TCGA-BR-8589-01 4 83839152 83839152 T G THAP9 Missense_Mutation p.V596G 0.15 tolerated(0.52) benign(0) TCGA-BR-8589-01 4 83996732 83996732 A C COPS4 3'UTR 0.23 TCGA-BR-8589-01 4 84222200 84222200 T C HPSE Missense_Mutation p.K462R 0.32 tolerated(0.08) possibly_damaging(0.517) TCGA-BR-8589-01 4 8470155 8470155 A T TRMT44 Intron 0.09 TCGA-BR-8589-01 4 8621297 8621297 T C CPZ Missense_Mutation p.F638L 0.08 tolerated(0.08) benign(0.071) TCGA-BR-8589-01 4 87022315 87022315 T G MAPK10 Missense_Mutation p.D207A 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8589-01 4 87142 87142 A C Z95704.2 RNA 0.34 TCGA-BR-8589-01 4 87622548 87622548 T G PTPN13 Silent p.S263S 0.27 TCGA-BR-8589-01 4 88234976 88234976 T G HSD17B13 Silent p.R232R 0.11 TCGA-BR-8589-01 4 88583146 88583146 A G DMP1 Silent p.S72S 0.08 TCGA-BR-8589-01 4 88584170 88584170 T G DMP1 Missense_Mutation p.F414V 0.22 tolerated(0.48) unknown(0) TCGA-BR-8589-01 4 88584322 88584322 A C DMP1 Missense_Mutation p.E464D 0.22 deleterious(0.03) unknown(0) TCGA-BR-8589-01 4 89311919 89311919 T G HERC6 Silent p.A184A 0.20 TCGA-BR-8589-01 5 114480405 114480405 T G TRIM36 Missense_Mutation p.N221H 0.10 tolerated(0.1) probably_damaging(0.997) TCGA-BR-8589-01 5 114513366 114513366 A C TRIM36 Intron 0.21 TCGA-BR-8589-01 5 115173356 115173356 T G ATG12 Missense_Mutation p.K90T 0.12 deleterious(0) probably_damaging(0.983) TCGA-BR-8589-01 5 118502338 118502339 - T DMXL1 Frame_Shift_Ins p.G1669Wfs*5 0.27 TCGA-BR-8589-01 5 118829639 118829639 A T HSD17B4 Missense_Mutation p.Q314L 0.09 deleterious(0.04) benign(0.055) TCGA-BR-8589-01 5 118829640 118829640 A G HSD17B4 Silent p.Q314Q 0.09 TCGA-BR-8589-01 5 121413231 121413231 T G LOX Missense_Mutation p.E150D 0.07 tolerated(0.66) benign(0.001) TCGA-BR-8589-01 5 121786636 121786636 A C SNCAIP Silent p.R698R 0.25 TCGA-BR-8589-01 5 124080350 124080350 A C ZNF608 Silent p.T111T 0.26 TCGA-BR-8589-01 5 125819177 125819177 A T GRAMD3 Missense_Mutation p.D268V 0.18 deleterious(0) probably_damaging(0.916) TCGA-BR-8589-01 5 125960574 125960574 A C PHAX 3'UTR 0.13 TCGA-BR-8589-01 5 127483312 127483312 A G SLC12A2 Splice_Site p.X592_splice 0.12 TCGA-BR-8589-01 5 128862008 128862008 A C ADAMTS19 Silent p.A309A 0.16 TCGA-BR-8589-01 5 132431895 132431895 T G HSPA4 Missense_Mutation p.L586V 0.17 tolerated(0.63) benign(0.004) TCGA-BR-8589-01 5 133657596 133657596 T C CDKL3 Splice_Site p.X180_splice 0.32 TCGA-BR-8589-01 5 134223395 134223395 A C TXNDC15 Missense_Mutation p.E38D 0.05 tolerated_low_confidence(0.08) benign(0.002) TCGA-BR-8589-01 5 134678935 134678935 A C C5orf66 Missense_Mutation p.S73R 0.17 deleterious_low_confidence(0.04) possibly_damaging(0.514) TCGA-BR-8589-01 5 135567231 135567231 T G TRPC7 Missense_Mutation p.E617D 0.24 tolerated(0.08) benign(0.304) TCGA-BR-8589-01 5 137275969 137275969 T G FAM13B Missense_Mutation p.K898T 0.19 deleterious(0) probably_damaging(0.998) TCGA-BR-8589-01 5 13876847 13876847 T C DNAH5 Silent p.K1114K 0.12 TCGA-BR-8589-01 5 13894825 13894825 A C DNAH5 Missense_Mutation p.L789V 0.25 possibly_damaging(0.694) TCGA-BR-8589-01 5 140175798 140175798 A G PCDHA2 Missense_Mutation p.S417G 0.26 tolerated_low_confidence(0.06) benign(0.018) TCGA-BR-8589-01 5 140188288 140188288 A T PCDHA4 Missense_Mutation p.S506C 0.12 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-BR-8589-01 5 140214018 140214018 T G PCDHA7 Missense_Mutation p.F17C 0.29 tolerated_low_confidence(0.18) benign(0.004) TCGA-BR-8589-01 5 140228661 140228661 T G PCDHA9 Missense_Mutation p.L194R 0.09 deleterious_low_confidence(0) probably_damaging(1) TCGA-BR-8589-01 5 140256514 140256514 A C PCDHA12 Missense_Mutation p.K486T 0.14 deleterious_low_confidence(0) benign(0.023) TCGA-BR-8589-01 5 140431782 140431782 T A PCDHB1 Missense_Mutation p.S243T 0.26 tolerated(0.7) probably_damaging(0.987) TCGA-BR-8589-01 5 140431955 140431955 A C PCDHB1 Missense_Mutation p.E300D 0.13 tolerated(0.09) benign(0.026) TCGA-BR-8589-01 5 140517542 140517542 T G PCDHB5 3'UTR 0.36 TCGA-BR-8589-01 5 140590099 140590099 T A PCDHB12 Silent p.A540A 0.27 TCGA-BR-8589-01 5 140699524 140699524 T G TAF7 Silent p.R30R 0.25 TCGA-BR-8589-01 5 140725704 140725704 T A PCDHGA3 Missense_Mutation p.C702S 0.09 deleterious_low_confidence(0.01) possibly_damaging(0.889) TCGA-BR-8589-01 5 140768320 140768320 T G PCDHGB4 Missense_Mutation p.F290C 0.16 deleterious(0) probably_damaging(0.999) TCGA-BR-8589-01 5 140773688 140773688 T C PCDHGA8 Silent p.T436T 0.21 TCGA-BR-8589-01 5 140788105 140788105 T C PCDHGB6 Silent p.N112N 0.11 TCGA-BR-8589-01 5 140788397 140788397 T G PCDHGB6 Missense_Mutation p.L210V 0.15 deleterious(0) probably_damaging(0.996) TCGA-BR-8589-01 5 140789877 140789877 T A PCDHGB6 Missense_Mutation p.F703Y 0.10 deleterious(0) probably_damaging(0.996) TCGA-BR-8589-01 5 140794709 140794709 C T PCDHGA10 Missense_Mutation p.P656L 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.867) TCGA-BR-8589-01 5 140811196 140811196 A G PCDHGA12 Silent p.Q290Q 0.29 TCGA-BR-8589-01 5 141694376 141694376 T C SPRY4 Missense_Mutation p.S123G 0.12 tolerated(0.22) probably_damaging(0.997) TCGA-BR-8589-01 5 145616914 145616914 A C RBM27 Missense_Mutation p.S400R 0.08 deleterious_low_confidence(0.01) possibly_damaging(0.544) TCGA-BR-8589-01 5 145648801 145648801 A C RBM27 Missense_Mutation p.K828T 0.13 deleterious(0) probably_damaging(0.997) TCGA-BR-8589-01 5 14602336 14602336 A C FAM105A Silent p.R131R 0.22 TCGA-BR-8589-01 5 146798174 146798174 A C DPYSL3 Missense_Mutation p.I164S 0.10 tolerated(0.08) probably_damaging(0.982) TCGA-BR-8589-01 5 149003664 149003664 A G ARHGEF37 Silent p.Q475Q 0.07 TCGA-BR-8589-01 5 150436381 150436381 G A TNIP1 Silent p.F191F 0.09 TCGA-BR-8589-01 5 153149895 153149895 A G GRIA1 Silent p.K740K 0.19 TCGA-BR-8589-01 5 167921609 167921609 T G RARS Missense_Mutation p.L178R 0.23 deleterious(0) probably_damaging(0.925) TCGA-BR-8589-01 5 168180908 168180908 T C SLIT3 Missense_Mutation p.H597R 0.19 tolerated(1) benign(0.174) TCGA-BR-8589-01 5 170669756 170669756 T G RANBP17 Missense_Mutation p.I903S 0.26 deleterious(0) benign(0.036) TCGA-BR-8589-01 5 172517706 172517706 A C CREBRF Missense_Mutation p.K175T 0.17 deleterious_low_confidence(0.04) possibly_damaging(0.503) TCGA-BR-8589-01 5 175722138 175722138 T G SIMC1 Missense_Mutation p.F79V 0.13 deleterious(0) probably_damaging(0.997) TCGA-BR-8589-01 5 176011249 176011249 A G CDHR2 Missense_Mutation p.E706G 0.07 deleterious(0) probably_damaging(0.999) TCGA-BR-8589-01 5 176024901 176024901 T C GPRIN1 Silent p.Q645Q 0.11 TCGA-BR-8589-01 5 179707597 179707597 A C MAPK9 5'UTR 0.26 TCGA-BR-8589-01 5 26890056 26890056 T G CDH9 Missense_Mutation p.K467N 0.36 tolerated(0.27) probably_damaging(0.998) TCGA-BR-8589-01 5 31318152 31318152 T G CDH6 Intron 0.41 TCGA-BR-8589-01 5 33684103 33684103 T G ADAMTS12 Missense_Mutation p.N231T 0.26 tolerated(0.24) benign(0.001) TCGA-BR-8589-01 5 35649522 35649522 A G SPEF2 Silent p.K262K 0.28 TCGA-BR-8589-01 5 37010309 37010309 A C NIPBL Missense_Mutation p.E1514D 0.22 tolerated(0.24) benign(0.002) TCGA-BR-8589-01 5 37179471 37179471 A C C5orf42 Missense_Mutation p.L1938V 0.15 tolerated(0.34) benign(0.067) TCGA-BR-8589-01 5 38484884 38484884 G A LIFR Nonsense_Mutation p.R862* 0.10 TCGA-BR-8589-01 5 43245956 43245956 A C NIM1K Missense_Mutation p.S27R 0.11 tolerated(0.34) benign(0.028) TCGA-BR-8589-01 5 432582 432582 A C AHRR Missense_Mutation p.K327Q 0.09 deleterious(0.03) possibly_damaging(0.596) TCGA-BR-8589-01 5 5319213 5319213 A G ADAMTS16 Missense_Mutation p.K1213E 0.20 tolerated(0.12) benign(0.033) TCGA-BR-8589-01 5 5460799 5460799 A - KIAA0947 Frame_Shift_Del p.E451Dfs*8 0.23 TCGA-BR-8589-01 5 61762980 61762980 T G IPO11 Missense_Mutation p.F220C 0.07 deleterious(0) probably_damaging(0.997) TCGA-BR-8589-01 5 68423839 68423839 A C SLC30A5 Missense_Mutation p.K669N 0.08 tolerated(0.47) benign(0.012) TCGA-BR-8589-01 5 68687699 68687699 A T RAD17 Nonsense_Mutation p.K361* 0.34 TCGA-BR-8589-01 5 70818663 70818663 A C BDP1 Missense_Mutation p.K1758N 0.24 deleterious(0.02) benign(0.067) TCGA-BR-8589-01 5 71756638 71756638 A G ZNF366 Missense_Mutation p.V229A 0.24 tolerated(0.25) probably_damaging(0.92) TCGA-BR-8589-01 5 74872668 74872668 T G POLK Missense_Mutation p.L202V 0.28 deleterious(0.01) possibly_damaging(0.902) TCGA-BR-8589-01 5 76029324 76029324 C T F2R Missense_Mutation p.T425I 0.11 deleterious_low_confidence(0) possibly_damaging(0.791) TCGA-BR-8589-01 5 76732142 76732142 T C WDR41 Missense_Mutation p.T391A 0.26 tolerated(0.78) benign(0.002) TCGA-BR-8589-01 5 78426886 78426886 A G BHMT Missense_Mutation p.T390A 0.21 deleterious_low_confidence(0.02) benign(0.027) TCGA-BR-8589-01 5 79025083 79025083 A C CMYA5 Missense_Mutation p.K165N 0.14 benign(0.032) TCGA-BR-8589-01 5 79372825 79372825 A G THBS4 Silent p.P680P 0.21 TCGA-BR-8589-01 5 79616290 79616290 T G SPZ1 Missense_Mutation p.F86V 0.09 tolerated(0.49) benign(0.09) TCGA-BR-8589-01 5 9629253 9629253 A C TAS2R1 Missense_Mutation p.C298G 0.21 tolerated(0.97) benign(0.011) TCGA-BR-8589-01 6 100062409 100062409 A C PRDM13 Missense_Mutation p.E633A 0.25 deleterious(0.01) possibly_damaging(0.896) TCGA-BR-8589-01 6 10419705 10419705 A G TFAP2A 5'Flank 0.26 TCGA-BR-8589-01 6 10586363 10586363 T C GCNT2 Intron 0.26 TCGA-BR-8589-01 6 108192793 108192793 A C SEC63 3'UTR 0.13 TCGA-BR-8589-01 6 109770629 109770629 T C MICAL1 Missense_Mutation p.K497R 0.09 tolerated(1) benign(0.002) TCGA-BR-8589-01 6 110988698 110988698 A C CDK19 Missense_Mutation p.L132R 0.08 deleterious(0) possibly_damaging(0.905) TCGA-BR-8589-01 6 111588294 111588294 A G KIAA1919 Missense_Mutation p.E510G 0.09 tolerated_low_confidence(0.13) benign(0.049) TCGA-BR-8589-01 6 112671189 112671189 T C RFPL4B Silent p.F93F 0.27 TCGA-BR-8589-01 6 114379073 114379073 T G HS3ST5 Missense_Mutation p.E130A 0.26 deleterious(0.03) benign(0.037) TCGA-BR-8589-01 6 117113360 117113360 T A GPRC6A Missense_Mutation p.E909V 0.04 tolerated_low_confidence(0.09) benign(0.007) TCGA-BR-8589-01 6 117128056 117128056 A C GPRC6A Missense_Mutation p.V271G 0.14 deleterious(0) probably_damaging(0.975) TCGA-BR-8589-01 6 126333946 126333946 A C TRMT11 Silent p.R319R 0.20 TCGA-BR-8589-01 6 127768046 127768046 T C KIAA0408 Missense_Mutation p.K473R 0.11 tolerated(0.09) possibly_damaging(0.616) TCGA-BR-8589-01 6 132014759 132014759 T C ENPP3 Silent p.A469A 0.19 TCGA-BR-8589-01 6 135239997 135239997 A C ALDH8A1 Missense_Mutation p.S340R 0.10 tolerated(0.13) benign(0.03) TCGA-BR-8589-01 6 146351241 146351241 T G GRM1 Silent p.T196T 0.22 TCGA-BR-8589-01 6 146755850 146755850 A C GRM1 Missense_Mutation p.E1168A 0.22 deleterious_low_confidence(0.02) benign(0.068) TCGA-BR-8589-01 6 149699164 149699164 A T TAB2 Missense_Mutation p.N38I 0.37 deleterious(0) probably_damaging(0.981) TCGA-BR-8589-01 6 150209679 150209679 T G RAET1E Missense_Mutation p.Q249H 0.10 deleterious_low_confidence(0.04) benign(0.429) TCGA-BR-8589-01 6 151152705 151152705 T G PLEKHG1 Missense_Mutation p.L820V 0.22 tolerated(0.39) benign(0.014) TCGA-BR-8589-01 6 158537312 158537312 T C SERAC1 Missense_Mutation p.K469R 0.33 tolerated(0.58) benign(0.352) TCGA-BR-8589-01 6 159653494 159653494 T G FNDC1 Missense_Mutation p.D650E 0.16 tolerated_low_confidence(1) unknown(0) TCGA-BR-8589-01 6 160953592 160953592 G A LPA Missense_Mutation p.H1978Y 0.14 tolerated(1) benign(0.076) TCGA-BR-8589-01 6 161022106 161022106 T C LPA Silent p.R990R 0.24 TCGA-BR-8589-01 6 16327457 16327457 A T ATXN1 Missense_Mutation p.V362E 0.16 deleterious(0) possibly_damaging(0.634) TCGA-BR-8589-01 6 167717594 167717594 A C UNC93A Missense_Mutation p.Q271H 0.24 deleterious(0) probably_damaging(0.963) TCGA-BR-8589-01 6 170105268 170105268 A - PHF10 Frame_Shift_Del p.Y458Ifs*? 0.17 TCGA-BR-8589-01 6 17764753 17764753 A G KIF13A Missense_Mutation p.L1669P 0.25 tolerated_low_confidence(0.11) benign(0.004) TCGA-BR-8589-01 6 18213945 18213945 T C KDM1B Missense_Mutation p.F449S 0.30 deleterious(0) unknown(0) TCGA-BR-8589-01 6 24576688 24576688 A C KIAA0319 Missense_Mutation p.L548V 0.12 deleterious(0) probably_damaging(0.993) TCGA-BR-8589-01 6 24581195 24581195 T G KIAA0319 Missense_Mutation p.N413T 0.25 deleterious(0.03) possibly_damaging(0.614) TCGA-BR-8589-01 6 25773785 25773785 A C SLC17A4 Missense_Mutation p.K290N 0.35 deleterious(0) possibly_damaging(0.784) TCGA-BR-8589-01 6 26017925 26017925 A G HIST1H1A Silent p.S12S 0.21 TCGA-BR-8589-01 6 26027235 26027235 G A HIST1H4B Silent p.V82V 0.23 TCGA-BR-8589-01 6 26405873 26405873 T C BTN3A1 Missense_Mutation p.S28P 0.14 deleterious(0) probably_damaging(0.921) TCGA-BR-8589-01 6 28967434 28967434 T G ZNF311 Intron 0.25 TCGA-BR-8589-01 6 29275414 29275414 A G OR14J1 Silent p.K316K 0.20 TCGA-BR-8589-01 6 29627367 29627367 A C MOG Silent p.S120S 0.18 TCGA-BR-8589-01 6 30297161 30297161 T G TRIM39 Missense_Mutation p.L23V 0.10 deleterious(0.05) probably_damaging(0.996) TCGA-BR-8589-01 6 30297387 30297387 A G TRIM39 Missense_Mutation p.K98R 0.14 tolerated(0.73) benign(0.018) TCGA-BR-8589-01 6 30879519 30879519 A C GTF2H4 Missense_Mutation p.E267A 0.12 deleterious(0.03) probably_damaging(0.994) TCGA-BR-8589-01 6 31323279 31323279 A C HLA-B Missense_Mutation p.I237S 0.08 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BR-8589-01 6 31541078 31541078 T C LTA Missense_Mutation p.S76P 0.23 tolerated(0.07) benign(0.237) TCGA-BR-8589-01 6 37606368 37606368 T A MDGA1 Missense_Mutation p.K871M 0.40 deleterious(0) possibly_damaging(0.58) TCGA-BR-8589-01 6 38825338 38825338 A C DNAH8 Missense_Mutation p.E1709D 0.09 probably_damaging(0.972) TCGA-BR-8589-01 6 39874134 39874134 T G MOCS1 3'UTR 0.06 TCGA-BR-8589-01 6 41029181 41029181 A T APOBEC2 Missense_Mutation p.Q82H 0.23 deleterious(0.04) benign(0.086) TCGA-BR-8589-01 6 41037846 41037846 A G OARD1 Missense_Mutation p.L71P 0.16 deleterious(0) probably_damaging(1) TCGA-BR-8589-01 6 42934394 42934394 A C PEX6 Missense_Mutation p.L655V 0.11 tolerated(0.24) benign(0.001) TCGA-BR-8589-01 6 43267175 43267175 T G SLC22A7 Silent p.T149T 0.34 TCGA-BR-8589-01 6 44269806 44269806 T G AARS2 Missense_Mutation p.Q863H 0.15 deleterious(0.01) benign(0.004) TCGA-BR-8589-01 6 46620249 46620249 T C CYP39A1 Missense_Mutation p.K24R 0.11 tolerated(0.63) benign(0.022) TCGA-BR-8589-01 6 46657408 46657408 A G TDRD6 Missense_Mutation p.K515E 0.11 deleterious(0.01) benign(0.378) TCGA-BR-8589-01 6 47649717 47649717 A G GPR111 Silent p.Q474Q 0.21 TCGA-BR-8589-01 6 47763080 47763080 C T OPN5 Silent p.F179F 0.35 TCGA-BR-8589-01 6 51524683 51524683 A C PKHD1 Missense_Mutation p.I3414S 0.10 deleterious(0) benign(0.305) TCGA-BR-8589-01 6 56328444 56328444 A G DST Silent p.A4979A 0.14 TCGA-BR-8589-01 6 56472644 56472644 A C DST Intron 0.22 TCGA-BR-8589-01 6 56474002 56474002 A C DST Intron 0.28 TCGA-BR-8589-01 6 57372352 57372352 T G PRIM2 Missense_Mutation p.L253R 0.08 deleterious(0) probably_damaging(0.997) TCGA-BR-8589-01 6 64422746 64422746 T A PHF3 Missense_Mutation p.F1754L 0.12 tolerated(0.18) benign(0.006) TCGA-BR-8589-01 6 656331 656331 T G HUS1B Missense_Mutation p.K205T 0.16 deleterious(0.03) benign(0.239) TCGA-BR-8589-01 6 71998735 71998735 A C OGFRL1 Missense_Mutation p.E32D 0.27 tolerated(0.26) benign(0.081) TCGA-BR-8589-01 6 73904333 73904333 T G KCNQ5 Missense_Mutation p.D684E 0.22 tolerated(0.45) benign(0.076) TCGA-BR-8589-01 6 73904995 73904995 T C KCNQ5 Missense_Mutation p.F905S 0.06 deleterious_low_confidence(0) benign(0.118) TCGA-BR-8589-01 6 7414622 7414622 A C RIOK1 Missense_Mutation p.K532T 0.10 deleterious(0) probably_damaging(0.912) TCGA-BR-8589-01 6 76782301 76782301 G T IMPG1 5'UTR 0.40 TCGA-BR-8589-01 6 83075691 83075691 A C TPBG Missense_Mutation p.N338T 0.28 tolerated(0.17) benign(0.023) TCGA-BR-8589-01 6 88231202 88231202 A C RARS2 Missense_Mutation p.F339V 0.27 deleterious(0.01) possibly_damaging(0.904) TCGA-BR-8589-01 6 90368543 90368543 T A MDN1 Missense_Mutation p.Q4936L 0.19 unknown(0) TCGA-BR-8589-01 6 90382309 90382309 T G MDN1 Missense_Mutation p.K4529N 0.09 benign(0.006) TCGA-BR-8589-01 7 100084688 100084688 C T NYAP1 Missense_Mutation p.L105F 0.23 tolerated(0.34) possibly_damaging(0.626) TCGA-BR-8589-01 7 100190480 100190480 A C FBXO24 Missense_Mutation p.E249D 0.13 tolerated_low_confidence(0.07) benign(0.003) TCGA-BR-8589-01 7 100680229 100680229 A T MUC17 Silent p.A1844A 0.21 TCGA-BR-8589-01 7 100680882 100680882 A C MUC17 Missense_Mutation p.N2062T 0.08 unknown(0) TCGA-BR-8589-01 7 100841487 100841487 A C MOGAT3 Missense_Mutation p.L218R 0.08 deleterious(0) probably_damaging(0.995) TCGA-BR-8589-01 7 102608482 102608482 G A FBXL13 Missense_Mutation p.S193L 0.07 tolerated(0.3) benign(0.013) TCGA-BR-8589-01 7 103185604 103185604 T C RELN Missense_Mutation p.K2164E 0.11 tolerated(0.55) benign(0.027) TCGA-BR-8589-01 7 107198467 107198467 T G COG5 Missense_Mutation p.K94T 0.10 deleterious(0) possibly_damaging(0.714) TCGA-BR-8589-01 7 107262332 107262332 T G BCAP29 3'UTR 0.17 TCGA-BR-8589-01 7 107564421 107564421 A C LAMB1 Missense_Mutation p.V1779G 0.08 deleterious(0) possibly_damaging(0.852) TCGA-BR-8589-01 7 107720140 107720140 A G LAMB4 Missense_Mutation p.F598S 0.16 deleterious(0) probably_damaging(0.974) TCGA-BR-8589-01 7 111509658 111509658 C T DOCK4 Missense_Mutation p.R694Q 0.09 tolerated(0.07) benign(0.252) TCGA-BR-8589-01 7 115581990 115581990 T G TFEC Missense_Mutation p.K207T 0.29 deleterious(0) benign(0.347) TCGA-BR-8589-01 7 117235071 117235071 A C CFTR Missense_Mutation p.I860L 0.28 tolerated(0.49) benign(0) TCGA-BR-8589-01 7 117431987 117431987 T C CTTNBP2 Silent p.Q421Q 0.12 TCGA-BR-8589-01 7 120704342 120704342 A T CPED1 Missense_Mutation p.L197F 0.09 tolerated(0.05) probably_damaging(0.963) TCGA-BR-8589-01 7 122787232 122787232 A C SLC13A1 Missense_Mutation p.F265V 0.22 deleterious(0.01) probably_damaging(0.973) TCGA-BR-8589-01 7 123270123 123270123 A C ASB15 Missense_Mutation p.K515T 0.08 deleterious(0.04) benign(0.21) TCGA-BR-8589-01 7 128454771 128454771 T C CCDC136 Missense_Mutation p.V948A 0.22 tolerated(1) benign(0.001) TCGA-BR-8589-01 7 128619046 128619046 T A TNPO3 Silent p.L684L 0.15 TCGA-BR-8589-01 7 128645196 128645196 T C TNPO3 Silent p.K190K 0.09 TCGA-BR-8589-01 7 130039931 130039931 T G CEP41 Missense_Mutation p.K308Q 0.22 tolerated(1) benign(0.001) TCGA-BR-8589-01 7 134253009 134253009 G A AKR1B15 Missense_Mutation p.G84R 0.23 deleterious(0.01) probably_damaging(1) TCGA-BR-8589-01 7 134853724 134853724 T C C7orf49 5'UTR 0.23 TCGA-BR-8589-01 7 137270054 137270054 T C DGKI Silent p.Q488Q 0.26 TCGA-BR-8589-01 7 138455994 138455994 T C ATP6V0A4 5'UTR 0.18 TCGA-BR-8589-01 7 139572126 139572126 A C TBXAS1 Missense_Mutation p.Q62P 0.24 deleterious(0) possibly_damaging(0.811) TCGA-BR-8589-01 7 140158984 140158984 T C MKRN1 Silent p.E198E 0.13 TCGA-BR-8589-01 7 149475868 149475868 A C SSPO Splice_Site 0.20 TCGA-BR-8589-01 7 150325584 150325584 T G GIMAP6 Missense_Mutation p.E34D 0.13 tolerated(0.2) benign(0.02) TCGA-BR-8589-01 7 150749547 150749547 C T ASIC3 Silent p.L501L 0.09 TCGA-BR-8589-01 7 22999995 22999995 T G FAM126A Missense_Mutation p.M291L 0.05 tolerated(0.39) benign(0.003) TCGA-BR-8589-01 7 27204678 27204678 T G HOXA9 Missense_Mutation p.K133N 0.18 deleterious(0) possibly_damaging(0.861) TCGA-BR-8589-01 7 27832746 27832746 T G TAX1BP1 Missense_Mutation p.L442R 0.14 deleterious(0) probably_damaging(1) TCGA-BR-8589-01 7 31735091 31735091 T G PPP1R17 Missense_Mutation p.S31A 0.20 deleterious_low_confidence(0.01) benign(0.183) TCGA-BR-8589-01 7 36463463 36463463 A G ANLN Silent p.A838A 0.14 TCGA-BR-8589-01 7 38725595 38725595 T C FAM183B Missense_Mutation p.H4R 0.10 tolerated(1) benign(0.002) TCGA-BR-8589-01 7 42005617 42005617 C A GLI3 Silent p.L1018L 0.35 TCGA-BR-8589-01 7 42005620 42005620 G A GLI3 Silent p.A1017A 0.35 TCGA-BR-8589-01 7 42977040 42977040 A T MRPL32 Missense_Mutation p.Q144H 0.21 deleterious(0.01) benign(0.008) TCGA-BR-8589-01 7 43978042 43978042 T C UBE2D4 Silent p.L13L 0.10 TCGA-BR-8589-01 7 44156474 44156474 A C POLD2 Missense_Mutation p.V241G 0.16 deleterious(0) probably_damaging(0.998) TCGA-BR-8589-01 7 44260282 44260282 C T CAMK2B Silent p.S567S 0.13 TCGA-BR-8589-01 7 48007476 48007476 T G HUS1 Missense_Mutation p.E229D 0.12 tolerated(0.05) benign(0.031) TCGA-BR-8589-01 7 4800889 4800889 C T FOXK1 Missense_Mutation p.P631S 0.38 deleterious(0.03) benign(0.348) TCGA-BR-8589-01 7 48056918 48056918 T C SUN3 Missense_Mutation p.K77E 0.14 deleterious_low_confidence(0.01) benign(0.219) TCGA-BR-8589-01 7 48318068 48318068 T G ABCA13 Missense_Mutation p.L2426R 0.24 probably_damaging(0.959) TCGA-BR-8589-01 7 48319207 48319207 A C ABCA13 Missense_Mutation p.N2806H 0.07 possibly_damaging(0.885) TCGA-BR-8589-01 7 50057857 50057857 T G ZPBP Missense_Mutation p.E254D 0.17 tolerated(0.71) benign(0.015) TCGA-BR-8589-01 7 5254322 5254322 A C WIPI2 Missense_Mutation p.K123T 0.06 deleterious(0) possibly_damaging(0.739) TCGA-BR-8589-01 7 6026899 6026899 A C PMS2 Silent p.T499T 0.29 TCGA-BR-8589-01 7 6193751 6193751 A G USP42 Missense_Mutation p.S856G 0.19 tolerated(0.37) benign(0.014) TCGA-BR-8589-01 7 66773968 66773968 A C STAG3L4 RNA 0.23 TCGA-BR-8589-01 7 77423463 77423463 T G TMEM60 Missense_Mutation p.K76N 0.18 deleterious(0.01) benign(0.066) TCGA-BR-8589-01 7 82785475 82785475 T G PCLO Missense_Mutation p.N161T 0.36 unknown(0) TCGA-BR-8589-01 7 87022280 87022280 T G CROT Missense_Mutation p.F567V 0.26 deleterious(0) probably_damaging(0.998) TCGA-BR-8589-01 7 87072685 87072685 T C ABCB4 Missense_Mutation p.S436G 0.26 deleterious(0) probably_damaging(0.936) TCGA-BR-8589-01 7 88962900 88962900 C A ZNF804B Missense_Mutation p.Q202K 0.23 tolerated(0.11) benign(0) TCGA-BR-8589-01 7 913007 913007 T C SUN1 3'UTR 0.19 TCGA-BR-8589-01 7 91753068 91753068 A C CYP51A1 Silent p.T290T 0.25 TCGA-BR-8589-01 7 92733452 92733452 T C SAMD9 Silent p.E653E 0.05 TCGA-BR-8589-01 7 97362037 97362037 A C TAC1 Missense_Mutation p.D38A 0.14 deleterious(0.01) probably_damaging(0.956) TCGA-BR-8589-01 7 97363046 97363046 G A TAC1 Silent p.P45P 0.20 TCGA-BR-8589-01 7 97820058 97820058 T G LMTK2 Silent p.L339L 0.10 TCGA-BR-8589-01 7 97821396 97821396 T G LMTK2 Missense_Mutation p.F540C 0.10 deleterious(0) probably_damaging(0.999) TCGA-BR-8589-01 7 97821440 97821440 T G LMTK2 Missense_Mutation p.L555V 0.12 deleterious(0) probably_damaging(0.999) TCGA-BR-8589-01 8 104065044 104065044 A G ATP6V1C1 Missense_Mutation p.K156R 0.22 tolerated(0.11) benign(0.167) TCGA-BR-8589-01 8 110980514 110980514 A C KCNV1 Missense_Mutation p.F436V 0.12 tolerated(0.09) benign(0.039) TCGA-BR-8589-01 8 124357232 124357232 T C ATAD2 Silent p.G870G 0.07 TCGA-BR-8589-01 8 131795960 131795960 A G ADCY8 Missense_Mutation p.F1082S 0.12 tolerated(0.48) benign(0.005) TCGA-BR-8589-01 8 131796002 131796002 A C ADCY8 Missense_Mutation p.L1068R 0.20 deleterious(0) benign(0.014) TCGA-BR-8589-01 8 132991146 132991146 T C EFR3A Missense_Mutation p.F460S 0.31 deleterious(0.03) possibly_damaging(0.615) TCGA-BR-8589-01 8 133141494 133141494 A G KCNQ3 3'UTR 0.18 TCGA-BR-8589-01 8 140631316 140631316 C T KCNK9 Missense_Mutation p.D104N 0.41 tolerated(0.06) benign(0.052) TCGA-BR-8589-01 8 145947158 145947158 T G ZNF251 Missense_Mutation p.K629N 0.14 deleterious(0) benign(0.403) TCGA-BR-8589-01 8 16025998 16025998 T G MSR1 Missense_Mutation p.K200T 0.20 tolerated(0.26) benign(0.06) TCGA-BR-8589-01 8 17851033 17851033 A G PCM1 Missense_Mutation p.S1578G 0.26 tolerated(0.39) benign(0.002) TCGA-BR-8589-01 8 21997518 21997518 A C REEP4 Silent p.L87L 0.24 TCGA-BR-8589-01 8 22380024 22380024 T G PPP3CC Missense_Mutation p.F264C 0.13 deleterious(0) probably_damaging(1) TCGA-BR-8589-01 8 23299118 23299118 T G ENTPD4 Missense_Mutation p.E282D 0.12 deleterious(0.01) probably_damaging(0.936) TCGA-BR-8589-01 8 25766067 25766067 A C EBF2 Missense_Mutation p.F186V 0.10 deleterious(0) probably_damaging(0.928) TCGA-BR-8589-01 8 27888776 27888776 T G NUGGC Missense_Mutation p.N631T 0.25 tolerated(0.32) benign(0.001) TCGA-BR-8589-01 8 30336863 30336863 A G RBPMS Silent p.S72S 0.17 TCGA-BR-8589-01 8 33408905 33408905 T G RNF122 Missense_Mutation p.K62T 0.09 deleterious(0) benign(0.247) TCGA-BR-8589-01 8 36763254 36763254 T C KCNU1 Missense_Mutation p.S680P 0.07 tolerated(0.25) benign(0.004) TCGA-BR-8589-01 8 42019931 42019931 A C AP3M2 Missense_Mutation p.K193T 0.30 tolerated(0.1) possibly_damaging(0.697) TCGA-BR-8589-01 8 42050649 42050649 A G PLAT Missense_Mutation p.F19L 0.06 tolerated_low_confidence(0.73) benign(0.001) TCGA-BR-8589-01 8 42693377 42693377 G A THAP1 Nonsense_Mutation p.Q124* 0.05 TCGA-BR-8589-01 8 48762039 48762039 A G PRKDC Missense_Mutation p.L2343P 0.22 possibly_damaging(0.789) TCGA-BR-8589-01 8 48809800 48809800 T C PRKDC Silent p.L1173L 0.12 TCGA-BR-8589-01 8 55542190 55542190 A C RP1 Missense_Mutation p.Q1916H 0.19 deleterious(0) probably_damaging(0.999) TCGA-BR-8589-01 8 56879353 56879353 A C LYN Missense_Mutation p.E290D 0.21 deleterious(0) possibly_damaging(0.685) TCGA-BR-8589-01 8 62550538 62550538 T C ASPH Missense_Mutation p.N286S 0.15 tolerated_low_confidence(0.7) benign(0.158) TCGA-BR-8589-01 8 6614805 6614805 T G AGPAT5 Missense_Mutation p.L331V 0.06 tolerated(0.17) benign(0.045) TCGA-BR-8589-01 8 67067892 67067892 T G TRIM55 Intron 0.15 TCGA-BR-8589-01 8 68139716 68139716 A T ARFGEF1 Missense_Mutation p.L1237I 0.08 deleterious(0.04) probably_damaging(0.999) TCGA-BR-8589-01 8 71082536 71082536 T G NCOA2 Silent p.R148R 0.23 TCGA-BR-8589-01 8 72267124 72267124 A G EYA1 Missense_Mutation p.L6P 0.06 tolerated_low_confidence(0.06) probably_damaging(0.999) TCGA-BR-8589-01 8 74742629 74742629 T G UBE2W Missense_Mutation p.N72H 0.26 deleterious(0.01) benign(0.053) TCGA-BR-8589-01 8 77617339 77617339 A C ZFHX4 Missense_Mutation p.K339T 0.23 possibly_damaging(0.607) TCGA-BR-8589-01 8 87656904 87656904 A C CNGB3 Missense_Mutation p.F334C 0.16 deleterious(0) probably_damaging(0.994) TCGA-BR-8589-01 8 97172781 97172781 T G GDF6 Missense_Mutation p.K47T 0.22 deleterious(0.02) benign(0.134) TCGA-BR-8589-01 8 98155478 98155478 T C CPQ 3'UTR 0.33 TCGA-BR-8589-01 9 101810103 101810103 T C COL15A1 Silent p.F905F 0.13 TCGA-BR-8589-01 9 107298596 107298596 T C OR13C3 Missense_Mutation p.S167G 0.04 deleterious(0) benign(0.066) TCGA-BR-8589-01 9 113220835 113220835 A C SVEP1 Missense_Mutation p.S1164R 0.28 benign(0.382) TCGA-BR-8589-01 9 115759766 115759766 A C ZNF883 RNA 0.06 TCGA-BR-8589-01 9 115806455 115806455 T G ZFP37 Missense_Mutation p.K148T 0.28 tolerated(0.13) benign(0.293) TCGA-BR-8589-01 9 119115949 119115949 A C PAPPA Silent p.G1408G 0.12 TCGA-BR-8589-01 9 124079367 124079367 T C GSN Missense_Mutation p.S304P 0.25 deleterious(0.01) probably_damaging(0.997) TCGA-BR-8589-01 9 134016018 134016018 T G NUP214 Missense_Mutation p.N405K 0.14 unknown(0) TCGA-BR-8589-01 9 134038401 134038401 A G NUP214 Missense_Mutation p.E855G 0.19 probably_damaging(0.932) TCGA-BR-8589-01 9 135144872 135144872 A C SETX Intron 0.17 TCGA-BR-8589-01 9 135266034 135266034 T G TTF1 Missense_Mutation p.E724D 0.32 deleterious(0.03) possibly_damaging(0.908) TCGA-BR-8589-01 9 135865169 135865169 A G GFI1B Missense_Mutation p.K230R 0.09 deleterious(0) probably_damaging(0.999) TCGA-BR-8589-01 9 136906979 136906979 G A BRD3 Missense_Mutation p.A437V 0.43 tolerated(0.5) benign(0.007) TCGA-BR-8589-01 9 137989648 137989648 T C OLFM1 Intron 0.12 TCGA-BR-8589-01 9 140441763 140441763 A C PNPLA7 Missense_Mutation p.F64C 0.21 tolerated(0.18) benign(0.428) TCGA-BR-8589-01 9 16436973 16436973 T C BNC2 Missense_Mutation p.N407D 0.10 tolerated(0.88) benign(0.012) TCGA-BR-8589-01 9 16738377 16738377 A C BNC2 Missense_Mutation p.V37G 0.10 tolerated_low_confidence(0.06) benign(0.004) TCGA-BR-8589-01 9 19120914 19120914 C T PLIN2 Missense_Mutation p.V187I 0.10 deleterious(0.01) possibly_damaging(0.817) TCGA-BR-8589-01 9 20995574 20995574 A G FOCAD Silent p.R1784R 0.14 TCGA-BR-8589-01 9 20995592 20995592 G T FOCAD Missense_Mutation p.K1790N 0.16 deleterious(0) possibly_damaging(0.609) TCGA-BR-8589-01 9 21141068 21141068 T C IFNW1 Missense_Mutation p.R168G 0.07 deleterious(0) probably_damaging(0.999) TCGA-BR-8589-01 9 2811528 2811528 A G KIAA0020 Silent p.L490L 0.16 TCGA-BR-8589-01 9 32558948 32558948 T G NDUFB6 Missense_Mutation p.K93T 0.08 tolerated(0.21) probably_damaging(0.924) TCGA-BR-8589-01 9 33443820 33443820 T G AQP3 Missense_Mutation p.N60T 0.19 tolerated(0.17) probably_damaging(1) TCGA-BR-8589-01 9 33953371 33953371 A G UBAP2 Missense_Mutation p.L323P 0.15 deleterious(0) probably_damaging(0.999) TCGA-BR-8589-01 9 34491532 34491532 T G DNAI1 Missense_Mutation p.F221V 0.15 tolerated(0.05) benign(0.318) TCGA-BR-8589-01 9 37518122 37518122 T C FBXO10 Silent p.K838K 0.20 TCGA-BR-8589-01 9 37888453 37888453 T G SLC25A51 Missense_Mutation p.K32T 0.07 deleterious(0.01) possibly_damaging(0.557) TCGA-BR-8589-01 9 43628663 43628663 C T SPATA31A6 Silent p.E93E 0.11 TCGA-BR-8589-01 9 4490700 4490700 A C SLC1A1 Missense_Mutation p.K7N 0.26 tolerated(0.26) benign(0.015) TCGA-BR-8589-01 9 4685004 4685004 A G CDC37L1 Missense_Mutation p.E87G 0.10 tolerated(0.06) probably_damaging(1) TCGA-BR-8589-01 9 5335303 5335303 T G RLN1 Missense_Mutation p.E169A 0.22 tolerated(0.07) benign(0.063) TCGA-BR-8589-01 9 5747306 5747306 A C KIAA1432 Missense_Mutation p.N418T 0.06 deleterious(0.01) possibly_damaging(0.588) TCGA-BR-8589-01 9 5763220 5763220 T G KIAA1432 Silent p.R731R 0.20 TCGA-BR-8589-01 9 71992295 71992295 T A FAM189A2 Missense_Mutation p.F88I 0.15 tolerated(0.13) benign(0.12) TCGA-BR-8589-01 9 72132044 72132044 T C APBA1 Missense_Mutation p.D28G 0.27 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-BR-8589-01 9 78772059 78772059 A G PCSK5 Missense_Mutation p.S471G 0.19 deleterious(0.04) benign(0.097) TCGA-BR-8589-01 9 79936645 79936645 T C VPS13A Missense_Mutation p.L1938P 0.30 deleterious(0.03) benign(0.304) TCGA-BR-8589-01 9 79954519 79954519 A C VPS13A Missense_Mutation p.K2156Q 0.22 tolerated(0.66) benign(0.024) TCGA-BR-8589-01 9 80038786 80038786 T A GNA14 3'UTR 0.13 TCGA-BR-8589-01 9 82336771 82336771 C T TLE4 Missense_Mutation p.R652W 0.13 deleterious(0) probably_damaging(0.938) TCGA-BR-8589-01 9 8338943 8338943 T G PTPRD Missense_Mutation p.E1786D 0.06 deleterious(0) probably_damaging(0.989) TCGA-BR-8589-01 9 84230907 84230907 T C TLE1 Missense_Mutation p.E303G 0.07 tolerated(0.13) benign(0.259) TCGA-BR-8589-01 9 8636748 8636748 T G PTPRD Missense_Mutation p.K54T 0.25 deleterious(0.01) probably_damaging(0.986) TCGA-BR-8589-01 9 90388453 90388453 T C CTSL3P RNA 0.28 TCGA-BR-8589-01 9 94172426 94172426 T G NFIL3 Missense_Mutation p.E197D 0.15 tolerated(0.32) benign(0.186) TCGA-BR-8589-01 9 98231052 98231052 A G PTCH1 Missense_Mutation p.L744P 0.09 deleterious(0.01) benign(0.405) TCGA-BR-8589-01 9 98244295 98244295 T G PTCH1 Missense_Mutation p.I228L 0.16 deleterious(0) benign(0.282) TCGA-BR-8589-01 9 99797109 99797109 T C CTSV Silent p.P268P 0.18 TCGA-BR-8589-01 X 100333931 100333931 A G TMEM35 5'UTR 0.10 TCGA-BR-8589-01 X 100536734 100536734 T A TAF7L Nonsense_Mutation p.K232* 0.18 TCGA-BR-8589-01 X 101615409 101615409 T G NXF2B 3'UTR 0.17 TCGA-BR-8589-01 X 101970070 101970070 A G GPRASP2 Silent p.Q91Q 0.53 TCGA-BR-8589-01 X 102979114 102979114 T G GLRA4 Missense_Mutation p.K129T 0.48 tolerated(0.1) probably_damaging(1) TCGA-BR-8589-01 X 105178289 105178289 T C NRK Missense_Mutation p.S1119P 0.48 tolerated(0.28) benign(0.006) TCGA-BR-8589-01 X 105450021 105450021 T A MUM1L1 Missense_Mutation p.L199H 0.24 tolerated(0.09) possibly_damaging(0.885) TCGA-BR-8589-01 X 107167580 107167580 T A MID2 Nonsense_Mutation p.Y481* 0.67 TCGA-BR-8589-01 X 107225022 107225022 C T TEX13B Silent p.T112T 0.49 TCGA-BR-8589-01 X 107863537 107863537 T A COL4A5 Missense_Mutation p.L853H 0.09 unknown(0) TCGA-BR-8589-01 X 110489860 110489860 T C CAPN6 Missense_Mutation p.K624R 0.57 tolerated(0.21) benign(0.006) TCGA-BR-8589-01 X 119509228 119509228 T G ATP1B4 Silent p.G188G 0.39 TCGA-BR-8589-01 X 120182312 120182312 A T GLUD2 Missense_Mutation p.K258N 0.58 deleterious(0.01) probably_damaging(0.927) TCGA-BR-8589-01 X 122616702 122616702 T C GRIA3 Missense_Mutation p.L831P 0.48 deleterious(0) probably_damaging(1) TCGA-BR-8589-01 X 123680875 123680875 A G TENM1 Missense_Mutation p.C834R 0.09 deleterious(0) probably_damaging(1) TCGA-BR-8589-01 X 129629644 129629644 T G RP1-274L7.1 Intron 0.08 TCGA-BR-8589-01 X 1317546 1317546 T G CRLF2 Missense_Mutation p.E173D 0.23 tolerated(0.76) benign(0.004) TCGA-BR-8589-01 X 132160803 132160803 A G USP26 Silent p.T482T 0.57 TCGA-BR-8589-01 X 132670080 132670080 A G GPC3 3'UTR 0.16 TCGA-BR-8589-01 X 135430503 135430503 T G GPR112 Silent p.G1546G 0.48 TCGA-BR-8589-01 X 135488095 135488095 T G GPR112 Missense_Mutation p.F2967V 0.50 deleterious(0) benign(0.058) TCGA-BR-8589-01 X 135750117 135750117 T G ARHGEF6 3'UTR 0.58 TCGA-BR-8589-01 X 1419418 1419418 A G CSF2RA Missense_Mutation p.N282S 0.15 tolerated(0.37) benign(0.113) TCGA-BR-8589-01 X 148037396 148037396 A G AFF2 Silent p.T607T 0.28 TCGA-BR-8589-01 X 152100279 152100279 T A ZNF185 Silent p.A326A 0.50 TCGA-BR-8589-01 X 15268632 15268632 T G ASB9 Missense_Mutation p.K163T 0.58 tolerated(0.08) benign(0.071) TCGA-BR-8589-01 X 153461452 153461452 A C OPN1MW Missense_Mutation p.K339T 0.23 deleterious(0.03) possibly_damaging(0.856) TCGA-BR-8589-01 X 154736703 154736703 T G TMLHE Missense_Mutation p.K284T 0.12 tolerated(0.41) benign(0.027) TCGA-BR-8589-01 X 17771450 17771450 A G SCML1 Missense_Mutation p.T310A 0.09 tolerated(0.07) possibly_damaging(0.777) TCGA-BR-8589-01 X 18924619 18924619 A G PHKA2 Missense_Mutation p.C934R 0.11 deleterious(0) possibly_damaging(0.779) TCGA-BR-8589-01 X 205517 205517 T C PLCXD1 Missense_Mutation p.L82P 0.08 deleterious(0.02) probably_damaging(0.934) TCGA-BR-8589-01 X 23398122 23398122 T G PTCHD1 Missense_Mutation p.S256A 0.39 tolerated(0.07) benign(0.386) TCGA-BR-8589-01 X 30237447 30237447 A T MAGEB2 Missense_Mutation p.K250N 0.67 deleterious(0.03) benign(0.016) TCGA-BR-8589-01 X 30737592 30737592 T G GK Missense_Mutation p.S365A 0.27 deleterious(0.03) benign(0.439) TCGA-BR-8589-01 X 37984761 37984761 T G SYTL5 Splice_Site p.X706_splice 0.70 TCGA-BR-8589-01 X 38169936 38169936 A G RPGR Missense_Mutation p.L237P 0.41 benign(0.161) TCGA-BR-8589-01 X 44109672 44109672 G T EFHC2 Missense_Mutation p.P209H 0.55 deleterious(0) probably_damaging(0.971) TCGA-BR-8589-01 X 46951102 46951102 A G RGN Silent p.L196L 0.56 TCGA-BR-8589-01 X 50051989 50051989 A T CCNB3 Missense_Mutation p.T274S 0.10 deleterious(0.02) possibly_damaging(0.872) TCGA-BR-8589-01 X 595445 595445 T G SHOX Missense_Mutation p.F124V 0.42 deleterious(0.02) possibly_damaging(0.622) TCGA-BR-8589-01 X 75648336 75648336 A C MAGEE1 Missense_Mutation p.S5R 0.25 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-BR-8589-01 X 77084665 77084665 T G MAGT1 3'UTR 0.32 TCGA-BR-8589-01 X 84510394 84510394 T G ZNF711 Missense_Mutation p.V70G 0.56 tolerated_low_confidence(0.17) possibly_damaging(0.517) TCGA-BR-8590-01 10 18828261 18828261 C T CACNB2 Missense_Mutation p.R531C 0.12 deleterious_low_confidence(0.01) probably_damaging(0.953) TCGA-BR-8590-01 10 26243904 26243904 A C MYO3A Missense_Mutation p.K90N 0.12 tolerated(0.4) benign(0.026) TCGA-BR-8590-01 10 32575665 32575665 T C EPC1 Missense_Mutation p.R450G 0.07 deleterious(0.03) possibly_damaging(0.787) TCGA-BR-8590-01 10 55583120 55583120 T G PCDH15 Splice_Site p.X1458_splice 0.13 TCGA-BR-8590-01 10 55996686 55996686 T G PCDH15 Missense_Mutation p.E294D 0.08 tolerated(0.47) benign(0.084) TCGA-BR-8590-01 10 5769036 5769036 A G FAM208B Missense_Mutation p.K146R 0.05 tolerated(0.1) benign(0.104) TCGA-BR-8590-01 10 70765585 70765585 C A KIAA1279 Missense_Mutation p.L235I 0.19 deleterious(0) probably_damaging(0.999) TCGA-BR-8590-01 10 91143418 91143418 T G IFIT1B Silent p.T116T 0.08 TCGA-BR-8590-01 11 101985013 101985013 A G YAP1 Missense_Mutation p.T154A 0.13 tolerated(0.75) benign(0.001) TCGA-BR-8590-01 11 113661433 113661433 A C ATF4P4 RNA 0.14 TCGA-BR-8590-01 11 118375060 118375060 C T KMT2A Missense_Mutation p.P2818L 0.26 probably_damaging(0.94) TCGA-BR-8590-01 11 4510347 4510347 T A OR52K1 Missense_Mutation p.L73M 0.10 deleterious(0.03) benign(0.314) TCGA-BR-8590-01 11 4928970 4928970 T G OR51A7 Missense_Mutation p.L124R 0.09 deleterious(0.01) benign(0.072) TCGA-BR-8590-01 11 55371158 55371158 T G OR4C11 Missense_Mutation p.K231T 0.12 deleterious(0) benign(0.263) TCGA-BR-8590-01 11 55371231 55371231 T G OR4C11 Missense_Mutation p.S207R 0.19 deleterious(0) benign(0.192) TCGA-BR-8590-01 11 56344522 56344522 A C OR5M10 Missense_Mutation p.F226V 0.05 deleterious(0.01) benign(0) TCGA-BR-8590-01 11 63129941 63129941 G C SLC22A10 3'UTR 0.09 TCGA-BR-8590-01 11 68115710 68115710 G A LRP5 Missense_Mutation p.G163R 0.15 tolerated(0.25) probably_damaging(0.988) TCGA-BR-8590-01 11 7847027 7847027 T C OR5P3 Missense_Mutation p.R165G 0.14 deleterious(0.03) benign(0.002) TCGA-BR-8590-01 11 89774338 89774338 A C TRIM49C Missense_Mutation p.S327R 0.05 tolerated(0.19) benign(0.01) TCGA-BR-8590-01 12 10775239 10775239 A G STYK1 Missense_Mutation p.L322P 0.15 deleterious(0) probably_damaging(1) TCGA-BR-8590-01 12 113442842 113442842 G A OAS2 Missense_Mutation p.R428Q 0.19 deleterious(0.04) benign(0.132) TCGA-BR-8590-01 12 113603716 113603716 A G DDX54 Silent p.A512A 0.13 TCGA-BR-8590-01 12 11546376 11546376 A C PRB2 Silent p.P212P 0.12 TCGA-BR-8590-01 12 122016842 122016842 C A KDM2B Missense_Mutation p.D46Y 0.04 deleterious(0.04) possibly_damaging(0.663) TCGA-BR-8590-01 12 22025613 22025613 A G ABCC9 Missense_Mutation p.L715P 0.14 deleterious(0) probably_damaging(1) TCGA-BR-8590-01 12 40020151 40020151 G - C12orf40 Frame_Shift_Del p.S7Pfs*6 0.17 TCGA-BR-8590-01 12 40699659 40699659 T G LRRK2 Missense_Mutation p.F1284V 0.14 deleterious(0.04) probably_damaging(0.999) TCGA-BR-8590-01 12 49445717 49445717 A C KMT2D Silent p.P583P 0.07 TCGA-BR-8590-01 12 52886595 52886595 G T KRT6A Silent p.G126G 0.14 TCGA-BR-8590-01 12 53010025 53010025 G A KRT73 Missense_Mutation p.T196M 0.23 tolerated(0.23) benign(0.041) TCGA-BR-8590-01 12 53072332 53072332 C T KRT1 Missense_Mutation p.R267Q 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8590-01 12 58019453 58019453 T G SLC26A10 Silent p.A539A 0.17 TCGA-BR-8590-01 12 58152549 58152549 C T MARCH9 Missense_Mutation p.R304C 0.15 deleterious(0.05) benign(0.006) TCGA-BR-8590-01 12 75434899 75434899 A C KCNC2 3'UTR 0.07 TCGA-BR-8590-01 13 97999166 97999166 G A MBNL2 Missense_Mutation p.V217I 0.12 tolerated(0.18) benign(0.23) TCGA-BR-8590-01 14 23866231 23866231 G T MYH6 Silent p.G703G 0.07 TCGA-BR-8590-01 14 86087927 86087927 C A FLRT2 Silent p.S23S 0.13 TCGA-BR-8590-01 15 25616755 25616755 T G UBE3A Missense_Mutation p.E192A 0.08 tolerated(0.42) benign(0.002) TCGA-BR-8590-01 15 42178399 42178399 G A SPTBN5 Missense_Mutation p.R352C 0.17 probably_damaging(0.99) TCGA-BR-8590-01 16 12096857 12096857 C T SNX29 Missense_Mutation p.R27C 0.09 deleterious(0) probably_damaging(0.994) TCGA-BR-8590-01 16 56906327 56906328 - C SLC12A3 Frame_Shift_Ins p.S309Ifs*2 0.14 TCGA-BR-8590-01 16 81739133 81739133 G A CMIP Silent p.S707S 0.22 TCGA-BR-8590-01 17 11795238 11795238 A C DNAH9 Missense_Mutation p.T3753P 0.09 possibly_damaging(0.845) TCGA-BR-8590-01 17 17077343 17077343 T G MPRIP Missense_Mutation p.L848R 0.11 deleterious(0) probably_damaging(0.996) TCGA-BR-8590-01 17 26518100 26518100 G A NLK Silent p.G430G 0.11 TCGA-BR-8590-01 17 26851592 26851592 A C FOXN1 Silent p.P65P 0.09 TCGA-BR-8590-01 17 27903385 27903385 C T GIT1 Silent p.A497A 0.08 TCGA-BR-8590-01 17 33464035 33464035 G A NLE1 Silent p.V271V 0.09 TCGA-BR-8590-01 17 45299205 45299205 C T MYL4 Silent p.H157H 0.09 TCGA-BR-8590-01 17 5253856 5253856 C T RABEP1 Nonsense_Mutation p.Q299* 0.05 TCGA-BR-8590-01 17 55334407 55334407 A T MSI2 Intron 0.09 TCGA-BR-8590-01 17 56059243 56059243 G A VEZF1 Silent p.F261F 0.06 TCGA-BR-8590-01 17 56059278 56059278 G A VEZF1 Missense_Mutation p.H250Y 0.07 deleterious(0) possibly_damaging(0.714) TCGA-BR-8590-01 17 58024086 58024086 A T RPS6KB1 Silent p.P505P 0.06 TCGA-BR-8590-01 17 66524021 66524021 T G PRKAR1A Missense_Mutation p.L250R 0.11 deleterious(0) probably_damaging(0.998) TCGA-BR-8590-01 17 680125 680125 G A GLOD4 Missense_Mutation p.L82F 0.08 tolerated(0.06) possibly_damaging(0.891) TCGA-BR-8590-01 17 7577084 7577084 T A TP53 Missense_Mutation p.E285V 0.25 deleterious(0) probably_damaging(0.978) TCGA-BR-8590-01 17 7724572 7724572 G A DNAH2 Missense_Mutation p.R3676H 0.06 possibly_damaging(0.556) TCGA-BR-8590-01 18 2567227 2567227 A T METTL4 5'UTR 0.10 TCGA-BR-8590-01 18 50278619 50278619 C G DCC Missense_Mutation p.S96C 0.08 deleterious(0) probably_damaging(0.999) TCGA-BR-8590-01 18 71920857 71920857 C G CYB5A Missense_Mutation p.V123L 0.08 tolerated(0.38) possibly_damaging(0.714) TCGA-BR-8590-01 18 76754852 76754852 C T SALL3 Missense_Mutation p.A954V 0.14 tolerated(0.31) benign(0) TCGA-BR-8590-01 19 19371983 19371983 C T HAPLN4 Silent p.E41E 0.10 TCGA-BR-8590-01 19 22939535 22939535 T G ZNF99 3'Flank 0.19 TCGA-BR-8590-01 19 36034531 36034531 A C GAPDHS Intron 0.11 TCGA-BR-8590-01 19 37383033 37383033 A G ZNF829 Silent p.A301A 0.11 TCGA-BR-8590-01 19 37644040 37644040 T C ZNF585A Missense_Mutation p.K199R 0.10 tolerated(0.31) benign(0.008) TCGA-BR-8590-01 19 52002437 52002437 T A SIGLEC12 Missense_Mutation p.Q374H 0.12 tolerated(0.34) possibly_damaging(0.889) TCGA-BR-8590-01 19 53014994 53014994 T C ZNF578 Missense_Mutation p.S454P 0.22 tolerated(1) benign(0.003) TCGA-BR-8590-01 19 55320312 55320312 C G KIR2DL4 Nonsense_Mutation p.S227* 0.03 TCGA-BR-8590-01 19 8809050 8809050 A G ACTL9 Translation_Start_Site p.M1? 0.22 deleterious_low_confidence(0) possibly_damaging(0.879) TCGA-BR-8590-01 19 9017470 9017470 G A MUC16 Silent p.H12618H 0.11 TCGA-BR-8590-01 1 115218607 115218607 T G AMPD1 Missense_Mutation p.K502T 0.10 tolerated(0.08) possibly_damaging(0.854) TCGA-BR-8590-01 1 143767596 143767596 C A PPIAL4G Missense_Mutation p.D85Y 0.04 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BR-8590-01 1 157069034 157069034 G A ETV3L Silent p.Y65Y 0.07 TCGA-BR-8590-01 1 158687659 158687659 A G OR6K3 Missense_Mutation p.S83P 0.04 deleterious(0.01) possibly_damaging(0.786) TCGA-BR-8590-01 1 159683371 159683371 C T CRP Missense_Mutation p.A207T 0.10 tolerated(0.16) benign(0.034) TCGA-BR-8590-01 1 159683427 159683427 T C CRP Missense_Mutation p.E188G 0.07 deleterious(0.03) probably_damaging(0.913) TCGA-BR-8590-01 1 160385857 160385857 G A VANGL2 Missense_Mutation p.R26H 0.10 tolerated(0.11) unknown(0) TCGA-BR-8590-01 1 201380567 201380567 C G TNNI1 Missense_Mutation p.R125P 0.15 deleterious(0.02) probably_damaging(0.984) TCGA-BR-8590-01 1 215179216 215179216 C T KCNK2 5'UTR 0.07 TCGA-BR-8590-01 1 240370873 240370873 C - FMN2 Frame_Shift_Del p.P921Lfs*354 0.12 TCGA-BR-8590-01 1 240656388 240656388 A C GREM2 Missense_Mutation p.S130A 0.05 tolerated(0.17) benign(0.012) TCGA-BR-8590-01 1 248344005 248344005 A T OR2M2 Missense_Mutation p.T240S 0.08 deleterious(0.03) possibly_damaging(0.777) TCGA-BR-8590-01 1 248402877 248402877 T G OR2M4 Missense_Mutation p.L216R 0.09 deleterious(0) benign(0.034) TCGA-BR-8590-01 1 3679856 3679856 G T CCDC27 Missense_Mutation p.R380M 0.22 tolerated(0.09) benign(0.307) TCGA-BR-8590-01 1 70790597 70790597 C T ANKRD13C Silent p.V172V 0.07 TCGA-BR-8590-01 1 87569239 87569239 T - HS2ST1 Frame_Shift_Del p.F272Sfs*50 0.08 TCGA-BR-8590-01 20 1961114 1961114 T A PDYN Missense_Mutation p.Y207F 0.04 deleterious(0) probably_damaging(0.999) TCGA-BR-8590-01 20 23421043 23421043 T G CSTL1 Missense_Mutation p.F47V 0.07 deleterious(0) probably_damaging(0.935) TCGA-BR-8590-01 20 23860165 23860165 A T CST5 Missense_Mutation p.F50Y 0.06 tolerated(0.11) possibly_damaging(0.813) TCGA-BR-8590-01 20 34220233 34220233 C T CPNE1 Silent p.T133T 0.10 TCGA-BR-8590-01 21 10906873 10906873 T G TPTE 3'UTR 0.05 TCGA-BR-8590-01 22 30984024 30984024 T G PES1 Missense_Mutation p.K81T 0.07 tolerated(0.08) possibly_damaging(0.637) TCGA-BR-8590-01 2 11053508 11053508 G A KCNF1 Missense_Mutation p.R319H 0.08 deleterious(0) possibly_damaging(0.839) TCGA-BR-8590-01 2 115200344 115200344 G T DPP10 5'UTR 0.11 TCGA-BR-8590-01 2 141946115 141946115 A G LRP1B Silent p.N296N 0.07 TCGA-BR-8590-01 2 179260240 179260240 G A OSBPL6 Missense_Mutation p.R945Q 0.11 deleterious(0) probably_damaging(0.999) TCGA-BR-8590-01 2 179423358 179423358 G T TTN Missense_Mutation p.P28943Q 0.11 TCGA-BR-8590-01 2 179423359 179423359 G T TTN Missense_Mutation p.P28943T 0.11 TCGA-BR-8590-01 2 212251754 212251754 A C ERBB4 Missense_Mutation p.F1102C 0.08 tolerated(0.11) benign(0.002) TCGA-BR-8590-01 2 58386561 58386561 C T VRK2 Silent p.I420I 0.05 TCGA-BR-8590-01 2 73316544 73316544 C A RAB11FIP5 Intron 0.14 TCGA-BR-8590-01 3 133661595 133661595 G A SLCO2A1 Silent p.S493S 0.09 TCGA-BR-8590-01 3 148614411 148614411 G T CPA3 Nonsense_Mutation p.E391* 0.05 TCGA-BR-8590-01 3 193002808 193002808 T C ATP13A5 Missense_Mutation p.S1041G 0.11 tolerated(0.05) probably_damaging(0.913) TCGA-BR-8590-01 3 21552487 21552487 G A ZNF385D Missense_Mutation p.T102M 0.08 deleterious(0.02) probably_damaging(0.996) TCGA-BR-8590-01 3 38768457 38768457 G C SCN10A Missense_Mutation p.N909K 0.07 tolerated(0.13) benign(0.047) TCGA-BR-8590-01 3 43642035 43642035 C T ANO10 Missense_Mutation p.E60K 0.05 tolerated(0.63) benign(0.004) TCGA-BR-8590-01 3 45744976 45744976 G A SACM1L Missense_Mutation p.A27T 0.08 tolerated(0.68) benign(0) TCGA-BR-8590-01 3 52556627 52556627 T G STAB1 Missense_Mutation p.F2223V 0.13 deleterious(0) probably_damaging(0.99) TCGA-BR-8590-01 3 57232457 57232457 A T HESX1 Missense_Mutation p.L141I 0.12 deleterious(0) probably_damaging(0.997) TCGA-BR-8590-01 4 118975769 118975769 T G NDST3 Missense_Mutation p.F235C 0.09 deleterious(0.04) possibly_damaging(0.853) TCGA-BR-8590-01 4 126411185 126411185 T C FAT4 Missense_Mutation p.I4403T 0.10 benign(0.08) TCGA-BR-8590-01 4 164440523 164440523 A C TMA16 Missense_Mutation p.K157Q 0.18 deleterious(0) probably_damaging(0.991) TCGA-BR-8590-01 4 39216265 39216265 T C WDR19 Missense_Mutation p.I312T 0.10 deleterious(0) benign(0.187) TCGA-BR-8590-01 4 42895515 42895515 G A GRXCR1 Missense_Mutation p.D78N 0.12 tolerated(0.25) benign(0.059) TCGA-BR-8590-01 4 8218729 8218729 C T SH3TC1 Missense_Mutation p.T225M 0.11 tolerated(0.22) benign(0.157) TCGA-BR-8590-01 5 134785284 134785284 C T TIFAB Missense_Mutation p.V116I 0.07 tolerated(1) benign(0.001) TCGA-BR-8590-01 5 140221669 140221669 G A PCDHA8 Missense_Mutation p.A255T 0.07 tolerated_low_confidence(0.42) benign(0.005) TCGA-BR-8590-01 5 140236731 140236731 C T PCDHA10 Silent p.T366T 0.08 TCGA-BR-8590-01 5 140431954 140431954 A T PCDHB1 Missense_Mutation p.E300V 0.07 deleterious(0.02) benign(0.072) TCGA-BR-8590-01 5 140811824 140811824 A G PCDHGA12 Missense_Mutation p.S500G 0.07 deleterious_low_confidence(0) benign(0.376) TCGA-BR-8590-01 5 147889386 147889386 C T HTR4 Missense_Mutation p.E237K 0.07 tolerated(0.39) benign(0.108) TCGA-BR-8590-01 5 167489111 167489111 A C TENM2 Missense_Mutation p.E452D 0.12 tolerated(1) benign(0.012) TCGA-BR-8590-01 5 176005434 176005434 G A CDHR2 Missense_Mutation p.R548Q 0.11 deleterious(0.01) possibly_damaging(0.754) TCGA-BR-8590-01 5 35010216 35010216 T C AGXT2 Silent p.E409E 0.06 TCGA-BR-8590-01 5 36955688 36955688 A G NIPBL Missense_Mutation p.N60S 0.19 tolerated(0.3) benign(0.008) TCGA-BR-8590-01 5 38527391 38527391 C T LIFR Missense_Mutation p.R88H 0.17 tolerated(0.61) benign(0) TCGA-BR-8590-01 5 70818194 70818194 A C BDP1 Silent p.G1690G 0.08 TCGA-BR-8590-01 5 72743802 72743802 G C FOXD1 Missense_Mutation p.S129W 0.10 deleterious_low_confidence(0.01) probably_damaging(0.948) TCGA-BR-8590-01 6 117631255 117631255 T G ROS1 Missense_Mutation p.Q2141H 0.06 tolerated(0.11) benign(0.006) TCGA-BR-8590-01 6 155458563 155458563 G A TIAM2 Missense_Mutation p.A483T 0.08 tolerated(0.49) benign(0.004) TCGA-BR-8590-01 6 25861882 25861882 G A SLC17A3 Nonsense_Mutation p.R199* 0.07 TCGA-BR-8590-01 6 30551425 30551425 T C ABCF1 Missense_Mutation p.F319S 0.18 deleterious(0) possibly_damaging(0.673) TCGA-BR-8590-01 6 42044976 42044976 A T TAF8 Nonsense_Mutation p.K307* 0.12 TCGA-BR-8590-01 6 78172330 78172330 G A HTR1B Missense_Mutation p.T264M 0.08 tolerated(0.07) possibly_damaging(0.875) TCGA-BR-8590-01 6 97344625 97344625 A G NDUFAF4 Silent p.L79L 0.13 TCGA-BR-8590-01 7 103338436 103338436 C G RELN Missense_Mutation p.G336A 0.07 tolerated(0.89) probably_damaging(0.996) TCGA-BR-8590-01 7 107790344 107790344 G T NRCAM 3'UTR 0.10 TCGA-BR-8590-01 7 114298186 114298186 T G FOXP2 Silent p.P469P 0.07 TCGA-BR-8590-01 7 158531733 158531733 C T ESYT2 Missense_Mutation p.V777M 0.06 deleterious(0) probably_damaging(0.942) TCGA-BR-8590-01 7 64442456 64442456 A G ZNF117 5'UTR 0.08 TCGA-BR-8590-01 7 905675 905675 T C SUN1 Missense_Mutation p.F651L 0.15 deleterious(0.01) probably_damaging(0.973) TCGA-BR-8590-01 8 114290851 114290851 T C CSMD3 Missense_Mutation p.S162G 0.14 deleterious(0.04) benign(0.004) TCGA-BR-8590-01 8 118552170 118552170 C T MED30 Nonsense_Mutation p.R164* 0.18 TCGA-BR-8590-01 8 131797714 131797714 C A ADCY8 Missense_Mutation p.G1023V 0.09 deleterious(0.02) benign(0.018) TCGA-BR-8590-01 8 145139460 145139460 C T GPAA1 Missense_Mutation p.R320C 0.20 deleterious(0) probably_damaging(0.985) TCGA-BR-8590-01 8 145268049 145268049 G C MROH1 Intron 0.15 TCGA-BR-8590-01 8 15519706 15519706 T G TUSC3 Silent p.A203A 0.05 TCGA-BR-8590-01 9 140477600 140477600 A C ZMYND19 Nonsense_Mutation p.Y125* 0.07 TCGA-BR-8590-01 9 27172728 27172728 G A TEK Missense_Mutation p.G248E 0.09 deleterious(0) probably_damaging(0.997) TCGA-BR-8590-01 X 127185687 127185687 G T ACTRT1 Missense_Mutation p.P167T 0.19 deleterious(0.01) benign(0.078) TCGA-BR-8590-01 X 14625361 14625361 T G GLRA2 Missense_Mutation p.L229R 0.25 deleterious(0.01) probably_damaging(1) TCGA-BR-8590-01 X 152991318 152991318 G T ABCD1 Missense_Mutation p.E199D 0.19 tolerated(0.37) benign(0.174) TCGA-BR-8590-01 X 21627334 21627334 A G CNKSR2 Missense_Mutation p.Q764R 0.10 deleterious(0.03) possibly_damaging(0.468) TCGA-BR-8590-01 X 90691563 90691563 T A PABPC5 Missense_Mutation p.S329R 0.13 deleterious(0) possibly_damaging(0.889) TCGA-BR-8590-01 X 90691626 90691626 T C PABPC5 Silent p.S350S 0.22 TCGA-BR-8591-01 10 102505830 102505830 C T PAX2 5'UTR 0.22 TCGA-BR-8591-01 10 102824771 102824771 C T KAZALD1 3'UTR 0.33 TCGA-BR-8591-01 10 103919299 103919299 A - NOLC1 Frame_Shift_Del p.K280Nfs*3 0.25 TCGA-BR-8591-01 10 104174958 104174959 - G PSD Frame_Shift_Ins p.S263Ifs*38 0.20 TCGA-BR-8591-01 10 105344877 105344877 A G NEURL1 Missense_Mutation p.S412G 0.19 tolerated(0.67) probably_damaging(0.998) TCGA-BR-8591-01 10 111893350 111893350 A - ADD3 Frame_Shift_Del p.K701Rfs*8 0.42 TCGA-BR-8591-01 10 115804702 115804702 C T ADRB1 Missense_Mutation p.R271W 0.16 deleterious(0.01) possibly_damaging(0.711) TCGA-BR-8591-01 10 116730145 116730145 A G TRUB1 Missense_Mutation p.D181G 0.26 tolerated(0.07) benign(0.405) TCGA-BR-8591-01 10 118896101 118896101 C T VAX1 Missense_Mutation p.R104H 0.27 deleterious(0) unknown(0) TCGA-BR-8591-01 10 120801864 120801864 C T EIF3A Silent p.E1056E 0.24 TCGA-BR-8591-01 10 121556338 121556339 - C INPP5F Frame_Shift_Ins p.Q264Sfs*8 0.37 TCGA-BR-8591-01 10 122665505 122665505 T - WDR11 Frame_Shift_Del p.F1138Lfs*10 0.19 TCGA-BR-8591-01 10 123683794 123683794 G T ATE1 Silent p.R53R 0.26 TCGA-BR-8591-01 10 125521573 125521573 C T CPXM2 Missense_Mutation p.R531Q 0.20 deleterious(0.02) benign(0.345) TCGA-BR-8591-01 10 126495401 126495401 A G FAM175B Missense_Mutation p.E25G 0.10 deleterious(0) possibly_damaging(0.759) TCGA-BR-8591-01 10 127483521 127483521 A - UROS Frame_Shift_Del p.F196Lfs*44 0.27 TCGA-BR-8591-01 10 129905447 129905447 C T MKI67 Missense_Mutation p.A1553T 0.28 tolerated(0.26) benign(0.28) TCGA-BR-8591-01 10 13040383 13040383 C A CCDC3 Missense_Mutation p.Q168H 0.26 tolerated_low_confidence(0.28) benign(0.007) TCGA-BR-8591-01 10 131761786 131761786 C T EBF3 Missense_Mutation p.G46S 0.25 tolerated_low_confidence(0.17) benign(0.053) TCGA-BR-8591-01 10 134218325 134218325 G A PWWP2B Silent p.P107P 0.20 TCGA-BR-8591-01 10 15161388 15161388 T G NMT2 Missense_Mutation p.H375P 0.20 deleterious(0) probably_damaging(1) TCGA-BR-8591-01 10 15760807 15760807 C A ITGA8 Nonsense_Mutation p.E101* 0.21 TCGA-BR-8591-01 10 18803225 18803225 G A CACNB2 Missense_Mutation p.R244H 0.34 deleterious(0.05) probably_damaging(0.996) TCGA-BR-8591-01 10 21462798 21462798 G C NEBL-AS1 5'Flank 0.21 TCGA-BR-8591-01 10 22208767 22208767 T - DNAJC1 Frame_Shift_Del p.N210Mfs*5 0.23 TCGA-BR-8591-01 10 24498046 24498046 A G KIAA1217 5'Flank 0.15 TCGA-BR-8591-01 10 24508698 24508698 C G KIAA1217 Missense_Mutation p.P72A 0.24 tolerated(1) benign(0.004) TCGA-BR-8591-01 10 27411773 27411773 T C YME1L1 Missense_Mutation p.D468G 0.26 deleterious(0) probably_damaging(1) TCGA-BR-8591-01 10 35897061 35897062 TG - GJD4 Frame_Shift_Del p.S208Ffs*44 0.17 TCGA-BR-8591-01 10 35929556 35929556 A G FZD8 Missense_Mutation p.F268L 0.25 deleterious(0.03) benign(0.058) TCGA-BR-8591-01 10 49420083 49420083 C T FRMPD2 Missense_Mutation p.A509T 0.30 tolerated(0.08) probably_damaging(0.941) TCGA-BR-8591-01 10 50901943 50901943 A G C10orf53 Intron 0.31 TCGA-BR-8591-01 10 52751304 52751304 C A PRKG1 Missense_Mutation p.P56T 0.38 tolerated(0.26) benign(0.03) TCGA-BR-8591-01 10 60996388 60996388 G A PHYHIPL Nonsense_Mutation p.W150* 0.26 TCGA-BR-8591-01 10 61414180 61414180 T - SLC16A9 Frame_Shift_Del p.I202* 0.24 TCGA-BR-8591-01 10 61868786 61868786 G A ANK3 Missense_Mutation p.A992V 0.19 probably_damaging(0.979) TCGA-BR-8591-01 10 61956355 61956355 G A ANK3 Missense_Mutation p.A573V 0.28 probably_damaging(0.964) TCGA-BR-8591-01 10 68687080 68687080 C T LRRTM3 Missense_Mutation p.R136W 0.30 deleterious(0) probably_damaging(1) TCGA-BR-8591-01 10 7213935 7213935 T C SFMBT2 Silent p.R779R 0.25 TCGA-BR-8591-01 10 72462141 72462141 C T ADAMTS14 Missense_Mutation p.A199V 0.29 tolerated(0.25) benign(0.158) TCGA-BR-8591-01 10 73270887 73270887 G A CDH23-AS1 Intron 0.22 TCGA-BR-8591-01 10 75407024 75407024 G A SYNPO2L Missense_Mutation p.P796S 0.22 tolerated(0.07) probably_damaging(0.998) TCGA-BR-8591-01 10 75558814 75558814 G - ZSWIM8 Frame_Shift_Del p.G1412Afs*69 0.26 TCGA-BR-8591-01 10 76910361 76910362 - T SAMD8 Frame_Shift_Ins p.E28* 0.18 TCGA-BR-8591-01 10 77158837 77158837 G A ZNF503 Silent p.S537S 0.24 TCGA-BR-8591-01 10 7774331 7774331 G T ITIH2 Missense_Mutation p.A560S 0.21 tolerated(0.29) benign(0.019) TCGA-BR-8591-01 10 78647039 78647039 C A KCNMA1 Missense_Mutation p.Q1215H 0.07 deleterious_low_confidence(0.03) benign(0) TCGA-BR-8591-01 10 8100728 8100728 C - GATA3 Frame_Shift_Del p.S237Afs*29 0.24 TCGA-BR-8591-01 10 82049113 82049113 C T MAT1A Missense_Mutation p.E23K 0.25 deleterious(0) probably_damaging(0.999) TCGA-BR-8591-01 10 860914 860914 G A LARP4B Nonsense_Mutation p.R598* 0.22 TCGA-BR-8591-01 10 89717719 89717720 TG - PTEN Frame_Shift_Del p.C250Wfs*2 0.14 TCGA-BR-8591-01 10 95891942 95891942 A G PLCE1 Silent p.A406A 0.25 TCGA-BR-8591-01 10 96006283 96006283 G A PLCE1 Missense_Mutation p.G1001R 0.13 deleterious(0) probably_damaging(0.968) TCGA-BR-8591-01 10 96039636 96039636 A G PLCE1 Missense_Mutation p.E1588G 0.17 tolerated(0.08) probably_damaging(0.983) TCGA-BR-8591-01 10 96106233 96106233 T - NOC3L Frame_Shift_Del p.K446Nfs*3 0.15 TCGA-BR-8591-01 10 98412547 98412547 G A PIK3AP1 Missense_Mutation p.A207V 0.23 tolerated(0.21) benign(0.063) TCGA-BR-8591-01 10 99079991 99079991 G T FRAT1 Missense_Mutation p.G261C 0.21 deleterious_low_confidence(0) probably_damaging(1) TCGA-BR-8591-01 11 100998971 100998971 C T PGR Silent p.A277A 0.20 TCGA-BR-8591-01 11 1016412 1016414 GAG - MUC6 In_Frame_Del p.S2130del 0.42 TCGA-BR-8591-01 11 1025844 1025844 G A MUC6 Silent p.S920S 0.39 TCGA-BR-8591-01 11 102593290 102593290 T G MMP8 Missense_Mutation p.N73H 0.22 deleterious(0.01) possibly_damaging(0.811) TCGA-BR-8591-01 11 102647034 102647035 - C MMP10 Frame_Shift_Ins p.E304Rfs*6 0.20 TCGA-BR-8591-01 11 103908681 103908681 T C DDI1 Silent p.D377D 0.21 TCGA-BR-8591-01 11 105850546 105850546 C T GRIA4 3'UTR 0.31 TCGA-BR-8591-01 11 106810877 106810878 - T GUCY1A2 Frame_Shift_Ins p.R172Kfs*4 0.23 TCGA-BR-8591-01 11 10794800 10794800 A G CTR9 Missense_Mutation p.R903G 0.30 tolerated(0.2) benign(0.007) TCGA-BR-8591-01 11 108043984 108043984 T C NPAT Missense_Mutation p.H576R 0.36 tolerated(0.41) benign(0.168) TCGA-BR-8591-01 11 108143578 108143578 A G ATM Missense_Mutation p.R1095G 0.20 tolerated(0.23) benign(0.206) TCGA-BR-8591-01 11 1094755 1094755 C T MUC2 Missense_Mutation p.T1948M 0.23 unknown(0) TCGA-BR-8591-01 11 111593411 111593411 C T SIK2 Missense_Mutation p.A693V 0.19 tolerated(0.07) benign(0.009) TCGA-BR-8591-01 11 113618308 113618308 T C ZW10 Missense_Mutation p.D406G 0.27 deleterious(0) possibly_damaging(0.878) TCGA-BR-8591-01 11 117073723 117073723 C A TAGLN 5'UTR 0.26 TCGA-BR-8591-01 11 117153534 117153534 G A RNF214 Missense_Mutation p.A640T 0.20 deleterious(0.01) probably_damaging(0.99) TCGA-BR-8591-01 11 118391558 118391558 G A KMT2A Missense_Mutation p.R3824Q 0.18 probably_damaging(0.937) TCGA-BR-8591-01 11 118769762 118769762 G A BCL9L Missense_Mutation p.R1288C 0.18 benign(0.106) TCGA-BR-8591-01 11 119004838 119004838 G A HINFP Missense_Mutation p.R395H 0.25 deleterious(0.01) probably_damaging(0.918) TCGA-BR-8591-01 11 119213688 119213688 G - MFRP Frame_Shift_Del p.H384Tfs*94 0.24 TCGA-BR-8591-01 11 119228271 119228271 G A USP2 Nonsense_Mutation p.R511* 0.26 TCGA-BR-8591-01 11 12029928 12029928 C T DKK3 Missense_Mutation p.A68T 0.42 deleterious(0.03) probably_damaging(0.998) TCGA-BR-8591-01 11 121475017 121475017 T C SORL1 Silent p.D1545D 0.20 TCGA-BR-8591-01 11 123810952 123810952 G A OR4D5 Missense_Mutation p.C210Y 0.25 deleterious(0.05) possibly_damaging(0.876) TCGA-BR-8591-01 11 123886567 123886567 T G OR10G4 Missense_Mutation p.C96G 0.21 deleterious(0) probably_damaging(0.999) TCGA-BR-8591-01 11 123909354 123909354 A G OR10G7 Missense_Mutation p.Y119H 0.18 deleterious(0) possibly_damaging(0.882) TCGA-BR-8591-01 11 124121072 124121072 C T OR8G1 Missense_Mutation p.S217F 0.28 deleterious_low_confidence(0) probably_damaging(1) TCGA-BR-8591-01 11 125523731 125523731 C T CHEK1 Missense_Mutation p.R442W 0.24 deleterious(0) probably_damaging(1) TCGA-BR-8591-01 11 128840993 128840993 G A ARHGAP32 Missense_Mutation p.A1358V 0.16 tolerated_low_confidence(0.11) benign(0.003) TCGA-BR-8591-01 11 130332143 130332143 G A ADAMTS15 Missense_Mutation p.G418R 0.27 deleterious(0) probably_damaging(1) TCGA-BR-8591-01 11 130785480 130785480 G A SNX19 Missense_Mutation p.R119C 0.30 tolerated(0.11) benign(0.052) TCGA-BR-8591-01 11 132205024 132205024 T C NTM Missense_Mutation p.L351P 0.23 deleterious(0.02) possibly_damaging(0.786) TCGA-BR-8591-01 11 134179567 134179567 A G GLB1L3 Missense_Mutation p.N337D 0.36 deleterious(0) probably_damaging(0.999) TCGA-BR-8591-01 11 134244962 134244962 C - GLB1L2 3'UTR 0.21 TCGA-BR-8591-01 11 14284280 14284280 G T RP11-21L19.1 3'Flank 0.16 TCGA-BR-8591-01 11 15994374 15994374 T G SOX6 Missense_Mutation p.E803A 0.25 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-BR-8591-01 11 17170280 17170280 T C PIK3C2A Missense_Mutation p.D461G 0.27 deleterious(0) probably_damaging(1) TCGA-BR-8591-01 11 1858494 1858494 C A SYT8 Missense_Mutation p.L347M 0.23 deleterious(0.02) probably_damaging(0.973) TCGA-BR-8591-01 11 20129269 20129269 G A NAV2 Missense_Mutation p.D2360N 0.28 deleterious(0) probably_damaging(0.993) TCGA-BR-8591-01 11 22257743 22257743 T C ANO5 Missense_Mutation p.I228T 0.31 tolerated(0.98) benign(0.002) TCGA-BR-8591-01 11 24927591 24927591 G A LUZP2 Missense_Mutation p.A151T 0.14 deleterious(0.03) probably_damaging(0.994) TCGA-BR-8591-01 11 2683459 2683459 C T KCNQ1 Intron 0.21 TCGA-BR-8591-01 11 28135070 28135070 A T METTL15 Missense_Mutation p.R63S 0.26 tolerated(0.31) benign(0.008) TCGA-BR-8591-01 11 294564 294564 G A ATHL1 Missense_Mutation p.V677I 0.30 tolerated(0.13) benign(0.021) TCGA-BR-8591-01 11 294680 294680 C - ATHL1 Frame_Shift_Del p.L717Sfs*49 0.23 TCGA-BR-8591-01 11 30900223 30900223 C T DCDC1 Missense_Mutation p.A1754T 0.16 deleterious(0.02) possibly_damaging(0.682) TCGA-BR-8591-01 11 30974099 30974099 C T DCDC1 Missense_Mutation p.E870K 0.35 deleterious(0.01) benign(0.133) TCGA-BR-8591-01 11 35287272 35287272 A G SLC1A2 Silent p.G485G 0.29 TCGA-BR-8591-01 11 35640853 35640853 G A FJX1 Silent p.A223A 0.24 TCGA-BR-8591-01 11 3697576 3697576 C T NUP98 Missense_Mutation p.R1739H 0.26 deleterious(0) probably_damaging(0.998) TCGA-BR-8591-01 11 377213 377213 G A B4GALNT4 Missense_Mutation p.R697H 0.23 deleterious(0) unknown(0) TCGA-BR-8591-01 11 3877513 3877513 G A STIM1 Missense_Mutation p.V5I 0.29 tolerated_low_confidence(0.42) benign(0.001) TCGA-BR-8591-01 11 43819867 43819867 T C HSD17B12 Intron 0.26 TCGA-BR-8591-01 11 43923081 43923081 C T ALKBH3 Missense_Mutation p.R159C 0.23 tolerated(0.07) benign(0.002) TCGA-BR-8591-01 11 44640247 44640247 G A CD82 Missense_Mutation p.V234M 0.26 deleterious(0) probably_damaging(0.964) TCGA-BR-8591-01 11 45991420 45991420 T C PHF21A Silent p.V215V 0.47 TCGA-BR-8591-01 11 46407532 46407532 G A CHRM4 Silent p.N192N 0.26 TCGA-BR-8591-01 11 46702224 46702224 G - ARHGAP1 Frame_Shift_Del p.L237Cfs*135 0.25 TCGA-BR-8591-01 11 47827774 47827774 G T NUP160 Missense_Mutation p.P846H 0.21 tolerated(0.07) benign(0.155) TCGA-BR-8591-01 11 49598070 49598070 G T RP11-707M1.1 RNA 0.18 TCGA-BR-8591-01 11 498027 498027 G A RNH1 Silent p.G357G 0.34 TCGA-BR-8591-01 11 5020589 5020589 T C OR51L1 Missense_Mutation p.V126A 0.30 deleterious(0) benign(0.101) TCGA-BR-8591-01 11 5068683 5068683 A - OR52J3 Frame_Shift_Del p.K311Nfs*? 0.18 TCGA-BR-8591-01 11 5373560 5373560 A T OR51B6 Missense_Mutation p.S275C 0.29 deleterious(0.01) probably_damaging(0.994) TCGA-BR-8591-01 11 5529845 5529845 C A UBQLN3 Missense_Mutation p.S315I 0.06 deleterious(0.01) benign(0.303) TCGA-BR-8591-01 11 55322291 55322291 C T OR4C15 Missense_Mutation p.A170V 0.27 tolerated_low_confidence(0.98) benign(0.023) TCGA-BR-8591-01 11 55681359 55681359 T C OR5W2 Missense_Mutation p.R234G 0.19 deleterious(0.02) benign(0.288) TCGA-BR-8591-01 11 55703685 55703686 - A OR5I1 Frame_Shift_Ins p.L65Pfs*2 0.21 TCGA-BR-8591-01 11 55735082 55735082 T A OR10AG1 Missense_Mutation p.K286N 0.36 deleterious(0.01) possibly_damaging(0.454) TCGA-BR-8591-01 11 55861422 55861422 C T OR8I2 Silent p.I213I 0.25 TCGA-BR-8591-01 11 56258060 56258061 - G OR5M8 Frame_Shift_Ins p.S263Lfs*6 0.15 TCGA-BR-8591-01 11 57093935 57093937 TTC - SSRP1 In_Frame_Del p.E692del 0.19 TCGA-BR-8591-01 11 57310769 57310769 C T SMTNL1 Silent p.P236P 0.23 TCGA-BR-8591-01 11 5758618 5758619 - C OR56B1 Frame_Shift_Ins p.S294Ffs*15 0.18 TCGA-BR-8591-01 11 58384785 58384787 AGA - ZFP91 In_Frame_Del p.K442del 0.29 TCGA-BR-8591-01 11 5841795 5841795 C T OR52N2 Missense_Mutation p.T77I 0.25 deleterious(0.01) possibly_damaging(0.739) TCGA-BR-8591-01 11 5841886 5841886 T C OR52N2 Silent p.H107H 0.22 TCGA-BR-8591-01 11 5878878 5878878 G T OR52E8 Missense_Mutation p.L19I 0.17 tolerated(0.38) benign(0.077) TCGA-BR-8591-01 11 58949549 58949550 - C DTX4 Frame_Shift_Ins p.M186Hfs*16 0.25 TCGA-BR-8591-01 11 60671329 60671330 AG - PRPF19 Frame_Shift_Del p.S8* 0.17 TCGA-BR-8591-01 11 60687353 60687353 G T TMEM109 Missense_Mutation p.G63V 0.27 tolerated(0.16) benign(0.316) TCGA-BR-8591-01 11 60701069 60701069 G - TMEM132A Frame_Shift_Del p.V474Cfs*16 0.26 TCGA-BR-8591-01 11 61124253 61124253 C T CYB561A3 Intron 0.26 TCGA-BR-8591-01 11 61323632 61323632 T G SYT7 Missense_Mutation p.S27R 0.33 deleterious_low_confidence(0.04) possibly_damaging(0.504) TCGA-BR-8591-01 11 61675532 61675532 C T RAB3IL1 Silent p.A86A 0.21 TCGA-BR-8591-01 11 61897762 61897762 T C INCENP Missense_Mutation p.S255P 0.28 tolerated(0.11) unknown(0) TCGA-BR-8591-01 11 62290261 62290261 A G AHNAK Silent p.P3876P 0.24 TCGA-BR-8591-01 11 62519843 62519845 AGA - ZBTB3 In_Frame_Del p.F481del 0.30 TCGA-BR-8591-01 11 6291484 6291484 C T CCKBR Silent p.P190P 0.29 TCGA-BR-8591-01 11 63992129 63992129 G A TRPT1 Missense_Mutation p.H132Y 0.24 deleterious(0.01) possibly_damaging(0.802) TCGA-BR-8591-01 11 64054482 64054482 G A GPR137 Missense_Mutation p.G193S 0.19 tolerated(0.36) possibly_damaging(0.839) TCGA-BR-8591-01 11 6413286 6413286 C - SMPD1 Frame_Shift_Del p.F333Sfs*52 0.19 TCGA-BR-8591-01 11 64418771 64418771 G T NRXN2 Missense_Mutation p.N958K 0.05 deleterious(0) probably_damaging(0.948) TCGA-BR-8591-01 11 64453315 64453315 G A NRXN2 Missense_Mutation p.R319C 0.24 deleterious(0) benign(0.116) TCGA-BR-8591-01 11 65546326 65546326 C T AP5B1 Silent p.K546K 0.25 TCGA-BR-8591-01 11 6592577 6592577 C A DNHD1 Missense_Mutation p.P4612H 0.28 possibly_damaging(0.726) TCGA-BR-8591-01 11 66052202 66052202 A G YIF1A Missense_Mutation p.V263A 0.31 tolerated(0.52) benign(0.001) TCGA-BR-8591-01 11 66055105 66055105 G - YIF1A Frame_Shift_Del p.R131Gfs*50 0.33 TCGA-BR-8591-01 11 66083578 66083578 C T CD248 Silent p.P307P 0.18 TCGA-BR-8591-01 11 66083958 66083958 T - CD248 Frame_Shift_Del p.T181Rfs*34 0.30 TCGA-BR-8591-01 11 66131805 66131805 A G SLC29A2 Missense_Mutation p.S384P 0.32 tolerated(0.2) possibly_damaging(0.46) TCGA-BR-8591-01 11 66191809 66191809 G T NPAS4 Missense_Mutation p.S483I 0.25 deleterious_low_confidence(0.04) possibly_damaging(0.462) TCGA-BR-8591-01 11 66605851 66605851 A - C11orf80 Frame_Shift_Del p.K563Rfs*19 0.13 TCGA-BR-8591-01 11 67018168 67018168 C T KDM2A Silent p.D889D 0.31 TCGA-BR-8591-01 11 67075058 67075058 C T SSH3 Missense_Mutation p.A214V 0.23 deleterious(0) probably_damaging(0.999) TCGA-BR-8591-01 11 67208817 67208817 C T CORO1B Missense_Mutation p.G208D 0.27 deleterious(0.01) benign(0.393) TCGA-BR-8591-01 11 69063839 69063839 A C MYEOV Missense_Mutation p.I308L 0.27 unknown(0) TCGA-BR-8591-01 11 71238828 71238828 G C KRTAP5-7 Missense_Mutation p.C161S 0.30 deleterious_low_confidence(0.04) unknown(0) TCGA-BR-8591-01 11 72004429 72004429 C A CLPB Missense_Mutation p.K702N 0.34 tolerated_low_confidence(0.15) benign(0.008) TCGA-BR-8591-01 11 73021308 73021308 G A ARHGEF17 Missense_Mutation p.R542Q 0.27 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-BR-8591-01 11 75480014 75480014 C T DGAT2 5'UTR 0.35 TCGA-BR-8591-01 11 75511517 75511517 C T DGAT2 Silent p.F377F 0.32 TCGA-BR-8591-01 11 75852185 75852185 A G UVRAG Missense_Mutation p.S610G 0.22 tolerated_low_confidence(0.42) benign(0) TCGA-BR-8591-01 11 76751336 76751336 C T B3GNT6 Silent p.S247S 0.35 TCGA-BR-8591-01 11 770874 770874 G - PDDC1 3'UTR 0.12 TCGA-BR-8591-01 11 88911521 88911521 T - TYR Frame_Shift_Del p.F135Lfs*6 0.21 TCGA-BR-8591-01 11 9051501 9051502 - T SCUBE2 Frame_Shift_Ins p.N754Kfs*2 0.23 TCGA-BR-8591-01 11 92087572 92087572 T C FAT3 Missense_Mutation p.I765T 0.33 probably_damaging(0.985) TCGA-BR-8591-01 11 92930964 92930964 G A SLC36A4 Missense_Mutation p.A12V 0.23 tolerated(0.38) unknown(0) TCGA-BR-8591-01 11 95724831 95724831 G A MAML2 Silent p.C732C 0.17 TCGA-BR-8591-01 11 9598763 9598763 C T WEE1 Missense_Mutation p.A365V 0.31 deleterious(0.01) possibly_damaging(0.694) TCGA-BR-8591-01 12 101603646 101603646 C - SLC5A8 5'UTR 0.33 TCGA-BR-8591-01 12 101764288 101764290 GAG - UTP20 In_Frame_Del p.E2213del 0.11 TCGA-BR-8591-01 12 103352643 103352643 G A ASCL1 Silent p.S207S 0.17 TCGA-BR-8591-01 12 104697811 104697811 C T EID3 Silent p.D33D 0.20 TCGA-BR-8591-01 12 106729528 106729528 T C TCP11L2 Missense_Mutation p.L295P 0.29 tolerated(0.24) benign(0.075) TCGA-BR-8591-01 12 108912982 108912982 C T FICD Silent p.N369N 0.19 TCGA-BR-8591-01 12 108919341 108919341 A G SART3 Missense_Mutation p.S806P 0.34 deleterious(0.03) probably_damaging(0.985) TCGA-BR-8591-01 12 108932768 108932768 C T SART3 Missense_Mutation p.R335H 0.19 deleterious(0) probably_damaging(0.999) TCGA-BR-8591-01 12 109523603 109523603 T C USP30 Missense_Mutation p.L474P 0.16 deleterious(0) probably_damaging(1) TCGA-BR-8591-01 12 11083764 11083764 T G PRH2 Intron 0.31 TCGA-BR-8591-01 12 110983821 110983821 G T PPTC7 Missense_Mutation p.L156M 0.24 deleterious(0.02) probably_damaging(0.995) TCGA-BR-8591-01 12 112219773 112219773 A G ALDH2 Missense_Mutation p.T56A 0.18 deleterious(0.02) benign(0.409) TCGA-BR-8591-01 12 112638474 112638474 G A HECTD4 Silent p.V2699V 0.26 TCGA-BR-8591-01 12 113403603 113403603 G A OAS3 Missense_Mutation p.V820M 0.14 deleterious(0) probably_damaging(0.999) TCGA-BR-8591-01 12 113533182 113533182 G A DTX1 Missense_Mutation p.R534H 0.31 deleterious(0) probably_damaging(0.998) TCGA-BR-8591-01 12 113600936 113600936 C - DDX54 Splice_Site p.X694_splice 0.30 TCGA-BR-8591-01 12 113617008 113617008 G A DDX54 Silent p.R168R 0.24 TCGA-BR-8591-01 12 11461619 11461619 C A PRB4 Nonsense_Mutation p.E100* 0.09 TCGA-BR-8591-01 12 117290627 117290627 C A RNFT2 3'Flank 0.12 TCGA-BR-8591-01 12 117624320 117624320 A - FBXO21 Frame_Shift_Del p.F144Lfs*9 0.27 TCGA-BR-8591-01 12 117768386 117768386 G A NOS1 Silent p.Y163Y 0.23 TCGA-BR-8591-01 12 117962957 117962957 A G KSR2 Missense_Mutation p.L640P 0.25 tolerated(0.25) benign(0.017) TCGA-BR-8591-01 12 118471957 118471957 G A WSB2 3'UTR 0.30 TCGA-BR-8591-01 12 121448890 121448890 C T C12orf43 Intron 0.29 TCGA-BR-8591-01 12 121655008 121655008 A G P2RX4 Missense_Mutation p.K85R 0.23 deleterious(0) probably_damaging(1) TCGA-BR-8591-01 12 123087723 123087723 A G KNTC1 Silent p.L1678L 0.26 TCGA-BR-8591-01 12 123333368 123333368 G A HIP1R Missense_Mutation p.R109H 0.29 tolerated(0.16) benign(0.022) TCGA-BR-8591-01 12 123472815 123472815 T A PITPNM2 Missense_Mutation p.K988M 0.23 deleterious(0) possibly_damaging(0.855) TCGA-BR-8591-01 12 124325995 124325995 G A DNAH10 Missense_Mutation p.V1637M 0.28 probably_damaging(0.999) TCGA-BR-8591-01 12 124419227 124419227 C A DNAH10 Missense_Mutation p.L4395I 0.34 probably_damaging(0.986) TCGA-BR-8591-01 12 124824632 124824632 C T NCOR2 Silent p.Q1869Q 0.25 TCGA-BR-8591-01 12 12815389 12815389 T - GPR19 5'UTR 0.21 TCGA-BR-8591-01 12 130184667 130184667 G A TMEM132D Missense_Mutation p.P219L 0.28 tolerated(0.85) benign(0.002) TCGA-BR-8591-01 12 132325159 132325159 C T MMP17 Missense_Mutation p.T155M 0.18 deleterious(0.04) possibly_damaging(0.833) TCGA-BR-8591-01 12 132508377 132508377 C T EP400 Silent p.R1582R 0.17 TCGA-BR-8591-01 12 133312082 133312082 T G ANKLE2 Missense_Mutation p.K537T 0.25 deleterious(0) benign(0.037) TCGA-BR-8591-01 12 14796510 14796510 T - GUCY2C Frame_Shift_Del p.K643Rfs*41 0.20 TCGA-BR-8591-01 12 15035029 15035029 T C MGP 3'UTR 0.22 TCGA-BR-8591-01 12 1904923 1904923 G A CACNA2D4 Missense_Mutation p.P1046L 0.21 deleterious(0) benign(0.137) TCGA-BR-8591-01 12 19427544 19427545 - A PLEKHA5 Frame_Shift_Ins p.N316Kfs*8 0.27 TCGA-BR-8591-01 12 20886040 20886040 T C SLCO1C1 Splice_Site p.X461_splice 0.33 TCGA-BR-8591-01 12 21661406 21661406 T - GOLT1B Frame_Shift_Del p.L72Wfs*6 0.21 TCGA-BR-8591-01 12 24736562 24736562 A - LINC00477 RNA 0.23 TCGA-BR-8591-01 12 25054761 25054761 A G BCAT1 Missense_Mutation p.V34A 0.22 tolerated(1) benign(0.001) TCGA-BR-8591-01 12 27840346 27840346 G A PPFIBP1 Missense_Mutation p.S765N 0.23 deleterious(0.04) probably_damaging(0.996) TCGA-BR-8591-01 12 2929298 2929298 G T ITFG2 Silent p.V151V 0.22 TCGA-BR-8591-01 12 310931 310931 C A SLC6A12 Missense_Mutation p.W192L 0.18 deleterious(0) benign(0.014) TCGA-BR-8591-01 12 40760868 40760868 A - LRRK2 Frame_Shift_Del p.K2485Sfs*9 0.17 TCGA-BR-8591-01 12 4460518 4460518 C T C12orf5 Missense_Mutation p.P119L 0.27 deleterious(0) probably_damaging(0.997) TCGA-BR-8591-01 12 45429851 45429851 C T DBX2 Silent p.A150A 0.35 TCGA-BR-8591-01 12 46315682 46315682 T C SCAF11 3'UTR 0.16 TCGA-BR-8591-01 12 4737317 4737317 C T AKAP3 Missense_Mutation p.G251R 0.21 tolerated(0.19) benign(0.003) TCGA-BR-8591-01 12 48134734 48134734 C T RAPGEF3 Silent p.T671T 0.24 TCGA-BR-8591-01 12 48359632 48359632 T C TMEM106C Missense_Mutation p.V88A 0.32 deleterious(0) probably_damaging(0.999) TCGA-BR-8591-01 12 48736761 48736761 A G ZNF641 Missense_Mutation p.F438L 0.20 tolerated_low_confidence(0.16) benign(0.002) TCGA-BR-8591-01 12 49434333 49434333 G T KMT2D Missense_Mutation p.P2407H 0.39 probably_damaging(0.994) TCGA-BR-8591-01 12 49438221 49438222 TC - KMT2D Frame_Shift_Del p.E1683Kfs*7 0.21 TCGA-BR-8591-01 12 49441849 49441849 T C KMT2D Missense_Mutation p.M1379V 0.06 probably_damaging(0.976) TCGA-BR-8591-01 12 49948320 49948320 G - KCNH3 Frame_Shift_Del p.G708Efs*11 0.20 TCGA-BR-8591-01 12 50524461 50524461 C T CERS5 Missense_Mutation p.R349H 0.23 deleterious(0.01) probably_damaging(0.993) TCGA-BR-8591-01 12 50867242 50867242 G A LARP4 Silent p.E530E 0.25 TCGA-BR-8591-01 12 52448164 52448164 C T NR4A1 Missense_Mutation p.R31C 0.18 tolerated(0.2) benign(0) TCGA-BR-8591-01 12 52799986 52799986 G T KRT82 Silent p.R26R 0.23 TCGA-BR-8591-01 12 53071182 53071182 C T KRT1 Missense_Mutation p.S349N 0.30 deleterious(0.01) probably_damaging(0.911) TCGA-BR-8591-01 12 53086240 53086240 G A KRT77 Silent p.A464A 0.23 TCGA-BR-8591-01 12 53189360 53189360 C T KRT3 Missense_Mutation p.G156D 0.17 tolerated(0.1) unknown(0) TCGA-BR-8591-01 12 53578783 53578783 G A ZNF740 Missense_Mutation p.E40K 0.19 deleterious(0.01) benign(0.305) TCGA-BR-8591-01 12 54366961 54366961 A C HOXC11 5'UTR 0.19 TCGA-BR-8591-01 12 54686726 54686726 A G NFE2 Missense_Mutation p.M185T 0.26 tolerated(0.22) benign(0.022) TCGA-BR-8591-01 12 56031396 56031396 A G OR10P1 Missense_Mutation p.T241A 0.10 deleterious(0) probably_damaging(1) TCGA-BR-8591-01 12 56075886 56075886 C T METTL7B Silent p.H116H 0.19 TCGA-BR-8591-01 12 56078819 56078819 A G ITGA7 3'UTR 0.28 TCGA-BR-8591-01 12 56505301 56505302 - A PA2G4 Frame_Shift_Ins p.K373Efs*19 0.24 TCGA-BR-8591-01 12 56630230 56630230 G A SLC39A5 Silent p.P332P 0.22 TCGA-BR-8591-01 12 56732898 56732898 G - IL23A Frame_Shift_Del p.G25Afs*26 0.23 TCGA-BR-8591-01 12 57906610 57906610 G A MARS Silent p.T610T 0.23 TCGA-BR-8591-01 12 57919556 57919556 C - MBD6 Frame_Shift_Del p.P270Lfs*107 0.19 TCGA-BR-8591-01 12 63541343 63541343 A - AVPR1A Frame_Shift_Del p.F351Lfs*19 0.25 TCGA-BR-8591-01 12 65456301 65456301 A G WIF1 Silent p.C262C 0.24 TCGA-BR-8591-01 12 66547156 66547156 A - TMBIM4 Frame_Shift_Del p.L57Yfs*16 0.18 TCGA-BR-8591-01 12 66641621 66641621 C A IRAK3 Missense_Mutation p.N487K 0.19 tolerated(0.94) benign(0.035) TCGA-BR-8591-01 12 6692339 6692339 G - CHD4 Intron 0.24 TCGA-BR-8591-01 12 69044187 69044187 A G RAP1B Missense_Mutation p.Q22R 0.25 tolerated(0.09) probably_damaging(1) TCGA-BR-8591-01 12 6923959 6923959 G A CD4 Silent p.G136G 0.27 TCGA-BR-8591-01 12 70928615 70928615 C T PTPRB Missense_Mutation p.G2068S 0.23 tolerated(1) benign(0.002) TCGA-BR-8591-01 12 71078009 71078009 C A PTPRR Silent p.T465T 0.32 TCGA-BR-8591-01 12 71977666 71977666 C T LGR5 Nonsense_Mutation p.R626* 0.28 TCGA-BR-8591-01 12 72863586 72863586 G A TRHDE Missense_Mutation p.G410E 0.08 deleterious(0) probably_damaging(1) TCGA-BR-8591-01 12 7295853 7295853 C T CLSTN3 Missense_Mutation p.T598I 0.26 deleterious(0.02) benign(0.03) TCGA-BR-8591-01 12 78511860 78511860 T C NAV3 Silent p.P941P 0.27 TCGA-BR-8591-01 12 81768483 81768483 G A PPFIA2 Missense_Mutation p.T399I 0.26 deleterious(0) possibly_damaging(0.905) TCGA-BR-8591-01 12 88524079 88524079 T - CEP290 Frame_Shift_Del p.N212Tfs*14 0.31 TCGA-BR-8591-01 12 91348379 91348379 C T CCER1 Silent p.A47A 0.16 TCGA-BR-8591-01 12 94648658 94648658 C T PLXNC1 Missense_Mutation p.R993C 0.27 deleterious(0) probably_damaging(1) TCGA-BR-8591-01 12 95396585 95396585 C T NDUFA12 Silent p.A33A 0.25 TCGA-BR-8591-01 12 95442883 95442883 T - NR2C1 Frame_Shift_Del p.E365Rfs*10 0.20 TCGA-BR-8591-01 12 96181193 96181193 G A NTN4 Missense_Mutation p.R37W 0.27 deleterious(0.03) possibly_damaging(0.832) TCGA-BR-8591-01 13 101289878 101289878 C T TMTC4 Missense_Mutation p.V305M 0.23 tolerated(0.28) benign(0.01) TCGA-BR-8591-01 13 101294559 101294559 T C TMTC4 Missense_Mutation p.K216R 0.28 tolerated(0.2) benign(0.003) TCGA-BR-8591-01 13 109318254 109318254 G A MYO16 5'UTR 0.32 TCGA-BR-8591-01 13 110434506 110434506 C T IRS2 Missense_Mutation p.V1299I 0.22 tolerated_low_confidence(0.32) benign(0) TCGA-BR-8591-01 13 110850974 110850974 G A COL4A1 Silent p.L375L 0.28 TCGA-BR-8591-01 13 111545452 111545452 T C ANKRD10 Missense_Mutation p.H205R 0.23 tolerated(0.32) benign(0.003) TCGA-BR-8591-01 13 113481079 113481079 C T ATP11A Silent p.Y365Y 0.23 TCGA-BR-8591-01 13 114514861 114514861 C T TMEM255B Silent p.P322P 0.21 TCGA-BR-8591-01 13 20635264 20635264 A - ZMYM2 Frame_Shift_Del p.S939Afs*15 0.23 TCGA-BR-8591-01 13 20716880 20716880 C T GJA3 Missense_Mutation p.R183H 0.22 deleterious(0.01) probably_damaging(0.989) TCGA-BR-8591-01 13 20797122 20797122 C G GJB6 Silent p.V166V 0.15 TCGA-BR-8591-01 13 21157114 21157114 G T IFT88 Missense_Mutation p.A46S 0.26 tolerated(0.77) benign(0.022) TCGA-BR-8591-01 13 21875633 21875633 C T LINC00422 3'Flank 0.28 TCGA-BR-8591-01 13 23915417 23915417 T - SACS Frame_Shift_Del p.K866Nfs*14 0.24 TCGA-BR-8591-01 13 31480852 31480852 G - MEDAG Frame_Shift_Del p.G69Afs*29 0.48 TCGA-BR-8591-01 13 32691585 32691585 C A FRY Missense_Mutation p.P147T 0.09 deleterious(0.03) benign(0.336) TCGA-BR-8591-01 13 33635847 33635847 C T KL Silent p.D877D 0.26 TCGA-BR-8591-01 13 36049602 36049602 G A MAB21L1 Missense_Mutation p.A225V 0.31 tolerated(0.23) benign(0.025) TCGA-BR-8591-01 13 36385083 36385083 C T DCLK1 Missense_Mutation p.S526N 0.24 tolerated(0.24) benign(0.383) TCGA-BR-8591-01 13 36878539 36878539 G A SPG20 Missense_Mutation p.T655M 0.29 tolerated_low_confidence(0.07) unknown(0) TCGA-BR-8591-01 13 37453416 37453416 T C SMAD9 Silent p.P137P 0.15 TCGA-BR-8591-01 13 39541029 39541029 A G STOML3 Missense_Mutation p.M270T 0.28 deleterious(0.01) benign(0.047) TCGA-BR-8591-01 13 39917944 39917944 G A LHFP 3'UTR 0.31 TCGA-BR-8591-01 13 44455171 44455171 A - LACC1 Frame_Shift_Del p.N19Tfs*7 0.16 TCGA-BR-8591-01 13 45149330 45149330 C T TSC22D1 Missense_Mutation p.R294H 0.14 deleterious(0.04) probably_damaging(0.996) TCGA-BR-8591-01 13 46638789 46638789 A G CPB2 Missense_Mutation p.W264R 0.18 deleterious(0) probably_damaging(1) TCGA-BR-8591-01 13 50026037 50026037 A - SETDB2 Frame_Shift_Del p.N5Mfs*11 0.20 TCGA-BR-8591-01 13 50062719 50062719 T - SETDB2 Frame_Shift_Del p.L637Yfs*29 0.14 TCGA-BR-8591-01 13 50589904 50589904 G A KCNRG Missense_Mutation p.R92H 0.23 tolerated(0.58) benign(0) TCGA-BR-8591-01 13 51855398 51855398 C T FAM124A 3'UTR 0.32 TCGA-BR-8591-01 13 52509016 52509016 A G ATP7B Missense_Mutation p.V1425A 0.21 tolerated(0.06) benign(0.15) TCGA-BR-8591-01 13 52976804 52976804 T C THSD1 5'UTR 0.17 TCGA-BR-8591-01 13 53049197 53049197 T C CKAP2 Missense_Mutation p.L658S 0.23 deleterious(0) probably_damaging(0.998) TCGA-BR-8591-01 13 60582719 60582719 A - DIAPH3 Frame_Shift_Del p.C325Vfs*15 0.24 TCGA-BR-8591-01 13 61987885 61987885 G - PCDH20 Frame_Shift_Del p.P116Lfs*11 0.18 TCGA-BR-8591-01 13 76382045 76382045 T C LMO7 Silent p.P309P 0.32 TCGA-BR-8591-01 13 76432165 76432166 - T LMO7 3'UTR 0.11 TCGA-BR-8591-01 13 77763121 77763121 T C MYCBP2 Missense_Mutation p.I1368V 0.11 possibly_damaging(0.74) TCGA-BR-8591-01 13 77779459 77779459 C T MYCBP2 Missense_Mutation p.D1221N 0.33 probably_damaging(0.994) TCGA-BR-8591-01 13 94482724 94482724 C T GPC6 Missense_Mutation p.R213C 0.19 deleterious(0) probably_damaging(0.909) TCGA-BR-8591-01 14 100728701 100728701 C T YY1 Missense_Mutation p.S247L 0.27 tolerated(0.18) benign(0.038) TCGA-BR-8591-01 14 100795994 100795994 G A SLC25A47 3'UTR 0.28 TCGA-BR-8591-01 14 102506738 102506738 G T DYNC1H1 Missense_Mutation p.Q3952H 0.31 benign(0.035) TCGA-BR-8591-01 14 102698915 102698915 C T MOK Missense_Mutation p.A275T 0.06 tolerated(0.84) benign(0.006) TCGA-BR-8591-01 14 102901155 102901155 C T TECPR2 Silent p.T667T 0.21 TCGA-BR-8591-01 14 105356064 105356064 G A CEP170B Missense_Mutation p.V1283M 0.24 tolerated(0.16) benign(0.197) TCGA-BR-8591-01 14 105397162 105397162 G - PLD4 Frame_Shift_Del p.V269Cfs*59 0.19 TCGA-BR-8591-01 14 105843116 105843116 G A PACS2 Silent p.S271S 0.19 TCGA-BR-8591-01 14 106321099 106321099 G A IGHM Missense_Mutation p.S297F 0.29 deleterious(0.01) possibly_damaging(0.828) TCGA-BR-8591-01 14 106321321 106321321 C T IGHM Missense_Mutation p.R223Q 0.24 tolerated(0.62) benign(0.01) TCGA-BR-8591-01 14 20248931 20248931 G - OR4M1 Frame_Shift_Del p.G152Afs*6 0.18 TCGA-BR-8591-01 14 20502155 20502155 C A OR4K13 Missense_Mutation p.V255F 0.17 deleterious(0) possibly_damaging(0.694) TCGA-BR-8591-01 14 20528376 20528376 C T OR4L1 Missense_Mutation p.P58L 0.20 deleterious(0) probably_damaging(1) TCGA-BR-8591-01 14 20854232 20854232 A G TEP1 Splice_Site p.X994_splice 0.23 TCGA-BR-8591-01 14 21025061 21025061 G A RNASE9 Silent p.P61P 0.27 TCGA-BR-8591-01 14 21490955 21490955 A G NDRG2 Intron 0.29 TCGA-BR-8591-01 14 21546604 21546604 G - ARHGEF40 Frame_Shift_Del p.A737Pfs*3 0.19 TCGA-BR-8591-01 14 21831283 21831283 C T SUPT16H Missense_Mutation p.R474Q 0.24 deleterious(0) possibly_damaging(0.621) TCGA-BR-8591-01 14 22111167 22111167 G A TRAV1-2 5'UTR 0.19 TCGA-BR-8591-01 14 23313028 23313028 C T MMP14 Silent p.D320D 0.22 TCGA-BR-8591-01 14 23858108 23858108 T C MYH6 Missense_Mutation p.T1379A 0.27 deleterious(0.04) possibly_damaging(0.859) TCGA-BR-8591-01 14 23885003 23885003 G A MYH7 Silent p.N1664N 0.16 TCGA-BR-8591-01 14 23894116 23894118 CTT - MYH7 In_Frame_Del p.K847del 0.24 TCGA-BR-8591-01 14 24113765 24113765 T G DHRS2 Splice_Site p.X229_splice 0.22 TCGA-BR-8591-01 14 24656883 24656883 G A IPO4 Missense_Mutation p.P133L 0.26 tolerated(0.27) benign(0.003) TCGA-BR-8591-01 14 24841792 24841792 G A NFATC4 Missense_Mutation p.G511S 0.29 deleterious(0.03) possibly_damaging(0.488) TCGA-BR-8591-01 14 29237890 29237890 G - FOXG1 Frame_Shift_Del p.G470Dfs*18 0.19 TCGA-BR-8591-01 14 31354865 31354865 T C COCH Intron 0.19 TCGA-BR-8591-01 14 36004595 36004595 G A INSM2 Silent p.P379P 0.22 TCGA-BR-8591-01 14 36768250 36768250 T C MBIP 3'UTR 0.10 TCGA-BR-8591-01 14 36987001 36987001 G T NKX2-1 Missense_Mutation p.L230M 0.23 deleterious(0) probably_damaging(0.998) TCGA-BR-8591-01 14 42356100 42356100 C T LRFN5 Missense_Mutation p.T91I 0.35 tolerated(0.13) possibly_damaging(0.542) TCGA-BR-8591-01 14 45537805 45537805 C T FAM179B Missense_Mutation p.A1590V 0.17 deleterious(0.01) benign(0.207) TCGA-BR-8591-01 14 45711564 45711564 G A MIS18BP1 Silent p.S272S 0.16 TCGA-BR-8591-01 14 47530528 47530528 C T MDGA2 Silent p.T483T 0.24 TCGA-BR-8591-01 14 50667726 50667726 C T SOS2 Missense_Mutation p.R97Q 0.26 tolerated(0.26) possibly_damaging(0.63) TCGA-BR-8591-01 14 53360082 53360082 T - FERMT2 Frame_Shift_Del p.K152Rfs*4 0.19 TCGA-BR-8591-01 14 55848903 55848903 G A ATG14 Silent p.P218P 0.25 TCGA-BR-8591-01 14 55903468 55903468 T C TBPL2 Missense_Mutation p.Q140R 0.22 deleterious_low_confidence(0.02) benign(0.004) TCGA-BR-8591-01 14 59954414 59954414 C T JKAMP Missense_Mutation p.T40M 0.06 deleterious(0.02) possibly_damaging(0.675) TCGA-BR-8591-01 14 60063371 60063371 G A RTN1 3'UTR 0.31 TCGA-BR-8591-01 14 60097259 60097259 C T RTN1 Intron 0.09 TCGA-BR-8591-01 14 61747063 61747063 C T TMEM30B Missense_Mutation p.R268H 0.35 deleterious(0.03) probably_damaging(1) TCGA-BR-8591-01 14 65197879 65197879 C T PLEKHG3 Missense_Mutation p.R225W 0.25 deleterious(0) probably_damaging(0.999) TCGA-BR-8591-01 14 65237609 65237609 C A SPTB Missense_Mutation p.R1931M 0.25 deleterious(0) benign(0.441) TCGA-BR-8591-01 14 67759378 67759378 T C MPP5 Missense_Mutation p.M173T 0.13 tolerated(0.35) benign(0.047) TCGA-BR-8591-01 14 68244276 68244276 C A ZFYVE26 Missense_Mutation p.K1658N 0.34 deleterious(0) probably_damaging(0.988) TCGA-BR-8591-01 14 69341603 69341603 C T ACTN1 Silent p.T906T 0.33 TCGA-BR-8591-01 14 69341673 69341673 A G ACTN1 Missense_Mutation p.I883T 0.31 deleterious(0) possibly_damaging(0.785) TCGA-BR-8591-01 14 69392358 69392358 C T ACTN1 Missense_Mutation p.R46Q 0.26 deleterious(0.03) probably_damaging(0.995) TCGA-BR-8591-01 14 69707899 69707899 T A EXD2 3'UTR 0.20 TCGA-BR-8591-01 14 70924556 70924556 T C ADAM21 Missense_Mutation p.Y114H 0.16 deleterious(0.04) benign(0.253) TCGA-BR-8591-01 14 71445168 71445168 A G PCNX Missense_Mutation p.N705S 0.30 tolerated(0.86) benign(0.002) TCGA-BR-8591-01 14 71570248 71570248 A G PCNX Missense_Mutation p.D1986G 0.08 deleterious(0) probably_damaging(1) TCGA-BR-8591-01 14 73718750 73718750 G A PAPLN Missense_Mutation p.G263S 0.32 deleterious(0) probably_damaging(0.999) TCGA-BR-8591-01 14 74036200 74036200 C T ACOT2 Missense_Mutation p.R86C 0.25 tolerated(0.05) benign(0.041) TCGA-BR-8591-01 14 74538180 74538180 T C ALDH6A1 Missense_Mutation p.S150G 0.34 tolerated(1) probably_damaging(0.996) TCGA-BR-8591-01 14 75329594 75329594 G T PROX2 Intron 0.22 TCGA-BR-8591-01 14 75388058 75388058 G A RPS6KL1 Missense_Mutation p.R63C 0.27 tolerated(0.15) probably_damaging(1) TCGA-BR-8591-01 14 75514604 75514604 T - MLH3 Frame_Shift_Del p.E586Nfs*24 0.48 TCGA-BR-8591-01 14 77269819 77269819 G A ANGEL1 Missense_Mutation p.R505C 0.13 tolerated(0.14) benign(0.033) TCGA-BR-8591-01 14 77492633 77492633 G A IRF2BPL Silent p.D501D 0.46 TCGA-BR-8591-01 14 77767578 77767578 G A POMT2 Missense_Mutation p.P224L 0.24 tolerated(0.33) benign(0.005) TCGA-BR-8591-01 14 77857510 77857510 G T SAMD15 Missense_Mutation p.A650S 0.32 deleterious(0.02) benign(0.41) TCGA-BR-8591-01 14 77889208 77889208 A G NOXRED1 Missense_Mutation p.S9P 0.21 deleterious(0) probably_damaging(0.921) TCGA-BR-8591-01 14 79175609 79175609 G A NRXN3 Missense_Mutation p.R51Q 0.24 tolerated(0.06) probably_damaging(0.959) TCGA-BR-8591-01 14 79433724 79433724 A C NRXN3 Missense_Mutation p.K611T 0.34 deleterious(0.05) possibly_damaging(0.888) TCGA-BR-8591-01 14 86088243 86088243 C T FLRT2 Missense_Mutation p.L129F 0.06 deleterious(0) possibly_damaging(0.874) TCGA-BR-8591-01 14 86088495 86088495 G A FLRT2 Missense_Mutation p.G213R 0.21 deleterious(0) probably_damaging(0.997) TCGA-BR-8591-01 14 89154769 89154769 T - EML5 Frame_Shift_Del p.N863Mfs*4 0.20 TCGA-BR-8591-01 14 89319400 89319400 G T TTC8 Missense_Mutation p.R237M 0.30 deleterious(0.04) probably_damaging(0.992) TCGA-BR-8591-01 14 89337945 89337945 C T TTC8 Silent p.L368L 0.26 TCGA-BR-8591-01 14 90651284 90651285 - G KCNK13 Frame_Shift_Ins p.V391Gfs*67 0.24 TCGA-BR-8591-01 14 91805636 91805636 G T CCDC88C Silent p.R265R 0.10 TCGA-BR-8591-01 14 92140520 92140520 C A CATSPERB Missense_Mutation p.E326D 0.15 deleterious(0.01) possibly_damaging(0.888) TCGA-BR-8591-01 14 92600352 92600352 T C CPSF2 Intron 0.31 TCGA-BR-8591-01 14 92922911 92922911 A T SLC24A4 Missense_Mutation p.E405V 0.24 deleterious(0.03) benign(0.097) TCGA-BR-8591-01 14 93814398 93814398 T - COX8C Frame_Shift_Del p.F52Lfs*5 0.27 TCGA-BR-8591-01 14 95899742 95899742 A G SYNE3 Missense_Mutation p.L848P 0.29 deleterious(0) probably_damaging(0.997) TCGA-BR-8591-01 14 96730667 96730667 T C BDKRB1 Silent p.A216A 0.21 TCGA-BR-8591-01 14 96949517 96949517 C T AK7 Silent p.A645A 0.37 TCGA-BR-8591-01 15 101152540 101152540 C T ASB7 Missense_Mutation p.P40L 0.27 tolerated(0.33) benign(0.221) TCGA-BR-8591-01 15 20496710 20496710 A C CHEK2P2 RNA 0.10 TCGA-BR-8591-01 15 20644320 20644320 T C HERC2P3 RNA 0.13 TCGA-BR-8591-01 15 23329963 23329963 T - HERC2P2 RNA 0.09 TCGA-BR-8591-01 15 23931878 23931878 T C NDN Missense_Mutation p.M163V 0.34 tolerated(0.05) probably_damaging(0.985) TCGA-BR-8591-01 15 25438424 25438424 G A SNORD115-11 3'Flank 0.28 TCGA-BR-8591-01 15 25940151 25940151 C T ATP10A Missense_Mutation p.R968H 0.29 tolerated(0.27) benign(0.001) TCGA-BR-8591-01 15 28361831 28361831 C T HERC2 Missense_Mutation p.S4530N 0.23 benign(0.003) TCGA-BR-8591-01 15 28483908 28483908 A - HERC2 Frame_Shift_Del p.F1196Lfs*12 0.18 TCGA-BR-8591-01 15 31323186 31323186 G A TRPM1 Missense_Mutation p.L1060F 0.25 deleterious(0.01) possibly_damaging(0.686) TCGA-BR-8591-01 15 31355374 31355374 G A TRPM1 Silent p.S321S 0.19 TCGA-BR-8591-01 15 31776544 31776544 C T OTUD7A Silent p.S578S 0.34 TCGA-BR-8591-01 15 31822996 31822996 C T OTUD7A Nonsense_Mutation p.W189* 0.26 TCGA-BR-8591-01 15 32460210 32460210 C T CHRNA7 Missense_Mutation p.R383C 0.12 deleterious(0.02) benign(0.087) TCGA-BR-8591-01 15 33192195 33192195 C A FMN1 Missense_Mutation p.K990N 0.09 deleterious(0) probably_damaging(1) TCGA-BR-8591-01 15 33872197 33872197 C - RYR3 Frame_Shift_Del p.I432Sfs*5 0.24 TCGA-BR-8591-01 15 34072425 34072425 C T RYR3 Missense_Mutation p.L3051F 0.20 possibly_damaging(0.756) TCGA-BR-8591-01 15 34532905 34532905 C T SLC12A6 Missense_Mutation p.G798E 0.20 deleterious(0) probably_damaging(1) TCGA-BR-8591-01 15 34544456 34544457 - A SLC12A6 Frame_Shift_Ins p.N417Qfs*5 0.15 TCGA-BR-8591-01 15 34649902 34649902 A - NUTM1 3'UTR 0.25 TCGA-BR-8591-01 15 38641697 38641697 A C SPRED1 Missense_Mutation p.E219D 0.07 tolerated(0.72) benign(0) TCGA-BR-8591-01 15 38643475 38643475 T G SPRED1 Silent p.P315P 0.27 TCGA-BR-8591-01 15 38990598 38990598 G A C15orf53 Missense_Mutation p.R131H 0.19 tolerated_low_confidence(0.26) benign(0) TCGA-BR-8591-01 15 39874832 39874832 T C THBS1 Missense_Mutation p.I169T 0.30 deleterious(0) benign(0.292) TCGA-BR-8591-01 15 40656425 40656425 A G DISP2 Splice_Site p.X150_splice 0.18 TCGA-BR-8591-01 15 40916700 40916700 T C CASC5 Missense_Mutation p.M1439T 0.30 tolerated(0.07) benign(0.214) TCGA-BR-8591-01 15 41191917 41191917 C T VPS18 Missense_Mutation p.R301C 0.30 tolerated(0.05) probably_damaging(0.953) TCGA-BR-8591-01 15 41650412 41650412 A G NUSAP1 Missense_Mutation p.K206E 0.24 deleterious(0) probably_damaging(0.967) TCGA-BR-8591-01 15 42109622 42109622 C T MAPKBP1 Missense_Mutation p.A589V 0.30 deleterious(0) probably_damaging(0.954) TCGA-BR-8591-01 15 42139713 42139713 C T PLA2G4B Missense_Mutation p.S940L 0.22 tolerated(0.18) possibly_damaging(0.777) TCGA-BR-8591-01 15 42178461 42178461 G A SPTBN5 Missense_Mutation p.A331V 0.22 benign(0.091) TCGA-BR-8591-01 15 42641671 42641671 T G GANC Missense_Mutation p.C837G 0.28 benign(0.007) TCGA-BR-8591-01 15 42702149 42702149 G A CAPN3 Missense_Mutation p.G691R 0.26 deleterious(0.02) possibly_damaging(0.902) TCGA-BR-8591-01 15 43470863 43470863 C A TMEM62 Missense_Mutation p.N480K 0.14 deleterious(0.04) benign(0.022) TCGA-BR-8591-01 15 43641114 43641115 - A ADAL Frame_Shift_Ins p.E191Rfs*11 0.25 TCGA-BR-8591-01 15 44093895 44093896 - T HYPK Intron 0.19 TCGA-BR-8591-01 15 45003781 45003782 CT - B2M Frame_Shift_Del p.L15Ffs*41 0.23 TCGA-BR-8591-01 15 45007619 45007619 A G B2M Splice_Site p.X23_splice 0.19 TCGA-BR-8591-01 15 45398489 45398489 G A DUOX2 Missense_Mutation p.P661L 0.25 tolerated(0.14) benign(0.025) TCGA-BR-8591-01 15 45399570 45399570 G A DUOX2 Nonsense_Mutation p.Q556* 0.32 TCGA-BR-8591-01 15 48057167 48057167 G A SEMA6D Missense_Mutation p.M447I 0.24 tolerated(0.61) benign(0) TCGA-BR-8591-01 15 48936954 48936954 G A FBN1 Missense_Mutation p.R5C 0.30 benign(0.03) TCGA-BR-8591-01 15 49303986 49303986 T C SECISBP2L Silent p.P602P 0.28 TCGA-BR-8591-01 15 52487639 52487639 T C MYO5C Missense_Mutation p.N1671D 0.08 deleterious(0) probably_damaging(1) TCGA-BR-8591-01 15 57489984 57489984 A - TCF12 Frame_Shift_Del p.V183Sfs*62 0.32 TCGA-BR-8591-01 15 59186117 59186117 A G SLTM Silent p.D517D 0.30 TCGA-BR-8591-01 15 60745938 60745939 - G NARG2 Frame_Shift_Ins p.Q330Pfs*15 0.19 TCGA-BR-8591-01 15 64422122 64422122 G A SNX1 Missense_Mutation p.R272H 0.13 deleterious(0.01) probably_damaging(1) TCGA-BR-8591-01 15 65157594 65157594 A T PLEKHO2 Missense_Mutation p.E327V 0.06 tolerated(0.11) benign(0.094) TCGA-BR-8591-01 15 66191137 66191137 G A MEGF11 Missense_Mutation p.P968L 0.25 tolerated(0.06) benign(0.012) TCGA-BR-8591-01 15 70348691 70348691 G A TLE3 Missense_Mutation p.P428L 0.24 tolerated(0.07) benign(0.064) TCGA-BR-8591-01 15 73866028 73866028 C T NPTN Missense_Mutation p.R272H 0.22 tolerated(0.51) benign(0.005) TCGA-BR-8591-01 15 74000799 74000801 GAG - CD276 In_Frame_Del p.E499del 0.35 TCGA-BR-8591-01 15 74487706 74487706 C T STRA6 Silent p.T217T 0.43 TCGA-BR-8591-01 15 74707019 74707019 G A SEMA7A Missense_Mutation p.A388V 0.34 tolerated(0.2) benign(0.005) TCGA-BR-8591-01 15 75581815 75581815 C T GOLGA6D Silent p.H214H 0.36 TCGA-BR-8591-01 15 75652923 75652923 A G MAN2C1 Missense_Mutation p.Y523H 0.29 deleterious(0) probably_damaging(0.985) TCGA-BR-8591-01 15 75685046 75685046 G A SIN3A Silent p.H796H 0.05 TCGA-BR-8591-01 15 77473379 77473379 C T PEAK1 Missense_Mutation p.R297Q 0.24 deleterious(0) probably_damaging(0.997) TCGA-BR-8591-01 15 77908005 77908005 G A LINGO1 Missense_Mutation p.R82C 0.18 deleterious(0) probably_damaging(0.997) TCGA-BR-8591-01 15 78526805 78526805 G A ACSBG1 Silent p.H13H 0.27 TCGA-BR-8591-01 15 79092633 79092633 C T ADAMTS7 Silent p.A119A 0.29 TCGA-BR-8591-01 15 79229754 79229754 G T CTSH Silent p.T45T 0.21 TCGA-BR-8591-01 15 79382870 79382870 G A RASGRF1 5'UTR 0.34 TCGA-BR-8591-01 15 79749636 79749636 T - KIAA1024 Frame_Shift_Del p.F384Sfs*121 0.18 TCGA-BR-8591-01 15 79750586 79750586 A - KIAA1024 Frame_Shift_Del p.S702Afs*11 0.23 TCGA-BR-8591-01 15 80855535 80855535 A G ARNT2 Missense_Mutation p.Y424C 0.27 deleterious(0) probably_damaging(0.936) TCGA-BR-8591-01 15 83520895 83520895 G A HOMER2 Missense_Mutation p.T265I 0.16 tolerated(0.09) benign(0.036) TCGA-BR-8591-01 15 83523493 83523493 C T HOMER2 Missense_Mutation p.R196Q 0.27 tolerated(0.14) benign(0.084) TCGA-BR-8591-01 15 83776454 83776454 G A TM6SF1 Missense_Mutation p.G8R 0.30 tolerated(0.07) possibly_damaging(0.803) TCGA-BR-8591-01 15 85149775 85149775 C A ZSCAN2 Intron 0.08 TCGA-BR-8591-01 15 85669470 85669471 TA - PDE8A Frame_Shift_Del p.M707Afs*2 0.22 TCGA-BR-8591-01 15 89074194 89074194 C T DET1 Missense_Mutation p.G259D 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-BR-8591-01 15 89401038 89401038 G T ACAN Missense_Mutation p.G1741V 0.21 tolerated(0.07) probably_damaging(0.994) TCGA-BR-8591-01 15 91017330 91017330 G A IQGAP1 Missense_Mutation p.R847Q 0.22 deleterious(0) probably_damaging(1) TCGA-BR-8591-01 15 91430551 91430551 G A FES Missense_Mutation p.G207S 0.24 tolerated(0.71) benign(0.001) TCGA-BR-8591-01 15 93007591 93007591 C T ST8SIA2 Silent p.V368V 0.20 TCGA-BR-8591-01 15 99514376 99514377 - T PGPEP1L Frame_Shift_Ins p.L12Afs*6 0.16 TCGA-BR-8591-01 15 99673231 99673233 GAG - SYNM In_Frame_Del p.E1558del 0.21 TCGA-BR-8591-01 16 11000684 11000684 C T CIITA Silent p.Y445Y 0.28 TCGA-BR-8591-01 16 111619 111619 C T RHBDF1 Silent p.A428A 0.24 TCGA-BR-8591-01 16 1129911 1129911 C T SSTR5 Missense_Mutation p.P348L 0.32 tolerated(0.5) benign(0) TCGA-BR-8591-01 16 113084 113084 C T RHBDF1 Missense_Mutation p.A187T 0.42 tolerated(0.46) benign(0.047) TCGA-BR-8591-01 16 11643465 11643465 C T LITAF 3'UTR 0.32 TCGA-BR-8591-01 16 11785753 11785753 C T TXNDC11 Silent p.Q431Q 0.33 TCGA-BR-8591-01 16 12136881 12136881 A T SNX29 Missense_Mutation p.E125D 0.25 deleterious(0) benign(0.216) TCGA-BR-8591-01 16 12223537 12223537 G A SNX29 Missense_Mutation p.R506Q 0.31 deleterious(0.03) probably_damaging(0.998) TCGA-BR-8591-01 16 12492337 12492338 AG - SNX29 Frame_Shift_Del p.S646Ffs*5 0.21 TCGA-BR-8591-01 16 15818575 15818575 G A MYH11 Nonsense_Mutation p.Q1356* 0.25 TCGA-BR-8591-01 16 167353 167353 G T NPRL3 Missense_Mutation p.P114T 0.33 deleterious(0.03) possibly_damaging(0.648) TCGA-BR-8591-01 16 1866933 1866933 G A HAGH Silent p.P236P 0.21 TCGA-BR-8591-01 16 2024963 2024963 C T TBL3 Silent p.L167L 0.22 TCGA-BR-8591-01 16 20335392 20335392 C T GP2 Missense_Mutation p.R94H 0.26 deleterious(0) probably_damaging(0.966) TCGA-BR-8591-01 16 20481029 20481029 A C ACSM2A Missense_Mutation p.K195T 0.05 tolerated(0.22) possibly_damaging(0.896) TCGA-BR-8591-01 16 2258623 2258623 C T MLST8 Intron 0.29 TCGA-BR-8591-01 16 23091266 23091266 C T USP31 Splice_Site p.X726_splice 0.40 TCGA-BR-8591-01 16 23632770 23632770 G - PALB2 Frame_Shift_Del p.P1009Lfs*6 0.22 TCGA-BR-8591-01 16 23718095 23718096 - G ERN2 Frame_Shift_Ins p.R204Pfs*15 0.26 TCGA-BR-8591-01 16 24828182 24828182 C A TNRC6A Missense_Mutation p.P1626H 0.25 deleterious(0) probably_damaging(0.997) TCGA-BR-8591-01 16 24942149 24942149 C T ARHGAP17 Missense_Mutation p.S824N 0.26 deleterious_low_confidence(0.01) benign(0) TCGA-BR-8591-01 16 27459804 27459804 C A IL21R Intron 0.33 TCGA-BR-8591-01 16 27509009 27509009 T - GTF3C1 Frame_Shift_Del p.S767Vfs*7 0.27 TCGA-BR-8591-01 16 27710866 27710866 A G KIAA0556 Silent p.G375G 0.28 TCGA-BR-8591-01 16 27777751 27777751 C T KIAA0556 Missense_Mutation p.R1311C 0.25 deleterious(0) probably_damaging(1) TCGA-BR-8591-01 16 2821619 2821619 G T TCEB2 Intron 0.19 TCGA-BR-8591-01 16 28898955 28898955 C T ATP2A1 Silent p.N280N 0.19 TCGA-BR-8591-01 16 28996808 28996808 G A LAT Missense_Mutation p.A60T 0.33 deleterious_low_confidence(0.04) possibly_damaging(0.682) TCGA-BR-8591-01 16 29675057 29675057 C T SPN Missense_Mutation p.T3M 0.24 deleterious_low_confidence(0.03) unknown(0) TCGA-BR-8591-01 16 29814177 29814177 G - KIF22 Frame_Shift_Del p.A458Pfs*4 0.15 TCGA-BR-8591-01 16 29818097 29818097 C T MAZ Silent p.G25G 0.36 TCGA-BR-8591-01 16 30566415 30566415 C A ZNF764 3'UTR 0.30 TCGA-BR-8591-01 16 30594461 30594461 C A ZNF785 Missense_Mutation p.R213M 0.30 deleterious(0.01) benign(0.276) TCGA-BR-8591-01 16 30903991 30903991 G - BCL7C Frame_Shift_Del p.Q120Sfs*33 0.29 TCGA-BR-8591-01 16 31004789 31004789 T C STX1B Missense_Mutation p.Q185R 0.17 deleterious(0.01) benign(0.04) TCGA-BR-8591-01 16 31097788 31097788 C T PRSS53 Missense_Mutation p.R178H 0.18 tolerated(0.13) benign(0.038) TCGA-BR-8591-01 16 31235606 31235606 G A TRIM72 Missense_Mutation p.G322R 0.25 tolerated(0.16) benign(0.032) TCGA-BR-8591-01 16 3139545 3139545 G A ZSCAN10 Silent p.G575G 0.18 TCGA-BR-8591-01 16 32265154 32265154 C T TP53TG3D Intron 0.18 TCGA-BR-8591-01 16 3254621 3254621 C T OR1F1 Silent p.A125A 0.21 TCGA-BR-8591-01 16 4431967 4431967 C T VASN Silent p.P363P 0.19 TCGA-BR-8591-01 16 457533 457533 T C DECR2 Missense_Mutation p.F104L 0.32 tolerated(0.1) benign(0.17) TCGA-BR-8591-01 16 4660537 4660537 A - UBALD1 Frame_Shift_Del p.F47Sfs*15 0.19 TCGA-BR-8591-01 16 4790616 4790616 C T C16orf71 Missense_Mutation p.P247S 0.17 tolerated(0.15) possibly_damaging(0.565) TCGA-BR-8591-01 16 48201048 48201048 C - ABCC11 3'UTR 0.32 TCGA-BR-8591-01 16 48256660 48256660 A G ABCC11 Missense_Mutation p.L209P 0.08 deleterious(0) probably_damaging(1) TCGA-BR-8591-01 16 4864621 4864621 G - GLYR1 Frame_Shift_Del p.R312Vfs*63 0.17 TCGA-BR-8591-01 16 4944524 4944524 C T PPL Silent p.P446P 0.28 TCGA-BR-8591-01 16 49671937 49671937 C - ZNF423 Frame_Shift_Del p.A376Pfs*13 0.14 TCGA-BR-8591-01 16 50785686 50785686 G A CYLD Missense_Mutation p.E226K 0.18 tolerated(0.15) benign(0.157) TCGA-BR-8591-01 16 53698779 53698779 T C RPGRIP1L Intron 0.21 TCGA-BR-8591-01 16 55359040 55359040 G A IRX6 Missense_Mutation p.A13T 0.45 tolerated(0.43) benign(0.009) TCGA-BR-8591-01 16 56501132 56501132 A G OGFOD1 Missense_Mutation p.H238R 0.27 deleterious(0) probably_damaging(0.989) TCGA-BR-8591-01 16 56996925 56996925 A G CETP Missense_Mutation p.N41S 0.29 deleterious(0.03) benign(0.265) TCGA-BR-8591-01 16 57054733 57054733 C T NLRC5 Missense_Mutation p.P37S 0.20 deleterious(0) probably_damaging(0.991) TCGA-BR-8591-01 16 57095358 57095358 A G NLRC5 Splice_Site p.X1329_splice 0.25 TCGA-BR-8591-01 16 57765236 57765236 T C CCDC135 3'UTR 0.14 TCGA-BR-8591-01 16 58550381 58550381 G A SETD6 Splice_Site p.X159_splice 0.25 TCGA-BR-8591-01 16 58566207 58566207 C T CNOT1 Missense_Mutation p.M1996I 0.25 tolerated(0.23) benign(0.179) TCGA-BR-8591-01 16 61891117 61891117 C T CDH8 Silent p.A191A 0.21 TCGA-BR-8591-01 16 632290 632290 C A PIGQ Intron 0.20 TCGA-BR-8591-01 16 66599895 66599895 A - CKLF Frame_Shift_Del p.E150Kfs*? 0.28 TCGA-BR-8591-01 16 67006313 67006313 C T CES3 Missense_Mutation p.A449V 0.27 tolerated(0.13) benign(0.017) TCGA-BR-8591-01 16 67180989 67180989 C - C16orf70 Frame_Shift_Del p.R411Gfs*6 0.22 TCGA-BR-8591-01 16 67298313 67298313 A C SLC9A5 Missense_Mutation p.K634T 0.09 tolerated(0.07) benign(0.009) TCGA-BR-8591-01 16 67418856 67418856 C A LRRC36 Missense_Mutation p.P710H 0.20 deleterious_low_confidence(0) probably_damaging(1) TCGA-BR-8591-01 16 67965049 67965049 G A CTRL Silent p.N36N 0.26 TCGA-BR-8591-01 16 68405291 68405291 C T SMPD3 Missense_Mutation p.G265D 0.29 tolerated(0.59) benign(0.002) TCGA-BR-8591-01 16 68597621 68597621 C T ZFP90 Nonsense_Mutation p.Q311* 0.25 TCGA-BR-8591-01 16 70172860 70172860 C T PDPR Silent p.L417L 0.13 TCGA-BR-8591-01 16 70400065 70400065 A G DDX19A Missense_Mutation p.K228E 0.15 deleterious(0) benign(0.032) TCGA-BR-8591-01 16 70698348 70698348 G A MTSS1L Silent p.S492S 0.24 TCGA-BR-8591-01 16 71209609 71209609 C T HYDIN Silent p.S139S 0.15 TCGA-BR-8591-01 16 71571012 71571012 T C CHST4 Silent p.D144D 0.29 TCGA-BR-8591-01 16 71748554 71748554 T C PHLPP2 Missense_Mutation p.T49A 0.24 tolerated_low_confidence(0.61) benign(0) TCGA-BR-8591-01 16 739373 739373 G A WDR24 Silent p.L90L 0.16 TCGA-BR-8591-01 16 74384600 74384600 A G RP11-252A24.2 RNA 0.30 TCGA-BR-8591-01 16 74985388 74985388 G A WDR59 Silent p.G98G 0.27 TCGA-BR-8591-01 16 77228987 77228987 C T MON1B Missense_Mutation p.R411W 0.23 deleterious(0.03) probably_damaging(0.999) TCGA-BR-8591-01 16 77393314 77393314 G A ADAMTS18 Missense_Mutation p.A408V 0.10 deleterious(0) probably_damaging(1) TCGA-BR-8591-01 16 78064352 78064352 C T CLEC3A Nonsense_Mutation p.R79* 0.11 TCGA-BR-8591-01 16 81134773 81134773 G T GCSH 5'Flank 0.23 TCGA-BR-8591-01 16 81194324 81194324 C T PKD1L2 RNA 0.33 TCGA-BR-8591-01 16 81272365 81272365 C T BCMO1 5'UTR 0.30 TCGA-BR-8591-01 16 81957092 81957092 T C PLCG2 Silent p.P770P 0.41 TCGA-BR-8591-01 16 82034454 82034455 - G SDR42E1 Frame_Shift_Ins p.K4Qfs*36 0.14 TCGA-BR-8591-01 16 83994314 83994314 C T OSGIN1 Silent p.H115H 0.11 TCGA-BR-8591-01 16 847077 847077 G A CHTF18 Silent p.A906A 0.28 TCGA-BR-8591-01 16 85010039 85010039 G - ZDHHC7 Frame_Shift_Del p.S317Hfs*5 0.24 TCGA-BR-8591-01 16 87446393 87446393 C T ZCCHC14 Missense_Mutation p.R508H 0.33 tolerated(0.1) benign(0.259) TCGA-BR-8591-01 16 87870112 87870112 G A SLC7A5 Missense_Mutation p.P428S 0.31 deleterious(0) probably_damaging(1) TCGA-BR-8591-01 16 88694459 88694459 C - ZC3H18 Frame_Shift_Del p.Q804Sfs*15 0.23 TCGA-BR-8591-01 16 88697651 88697651 A G ZC3H18 Missense_Mutation p.K936E 0.26 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-BR-8591-01 16 88780094 88780094 C T CTU2 Missense_Mutation p.R305W 0.28 deleterious(0) probably_damaging(1) TCGA-BR-8591-01 16 89258292 89258292 C T CDH15 Silent p.S535S 0.22 TCGA-BR-8591-01 16 89644102 89644102 G - CPNE7 Frame_Shift_Del p.G112Afs*18 0.33 TCGA-BR-8591-01 16 89645292 89645292 G A CPNE7 Missense_Mutation p.V129M 0.26 tolerated(0.19) benign(0) TCGA-BR-8591-01 16 89713100 89713100 G A CHMP1A Missense_Mutation p.S135L 0.17 deleterious(0) benign(0.323) TCGA-BR-8591-01 16 89774201 89774201 C T VPS9D1 3'UTR 0.30 TCGA-BR-8591-01 16 90028534 90028534 G A DEF8 Splice_Site p.X368_splice 0.16 TCGA-BR-8591-01 16 90097848 90097848 C T GAS8 Missense_Mutation p.R78W 0.42 deleterious(0) probably_damaging(0.987) TCGA-BR-8591-01 17 10404029 10404029 A C MYH1 Missense_Mutation p.L1260R 0.26 deleterious(0) possibly_damaging(0.571) TCGA-BR-8591-01 17 11656223 11656223 C T DNAH9 Silent p.G2228G 0.19 TCGA-BR-8591-01 17 12647672 12647672 T G MYOCD Missense_Mutation p.L297R 0.13 deleterious(0) probably_damaging(0.96) TCGA-BR-8591-01 17 13977692 13977692 C A COX10 Silent p.S32S 0.26 TCGA-BR-8591-01 17 15207323 15207323 A G TEKT3 Missense_Mutation p.I468T 0.23 deleterious(0) probably_damaging(0.986) TCGA-BR-8591-01 17 15522766 15522766 C T CDRT1 Missense_Mutation p.D21N 0.10 tolerated(0.15) benign(0.006) TCGA-BR-8591-01 17 15644464 15644464 G A TBC1D26 Missense_Mutation p.R192H 0.08 tolerated(0.77) benign(0.001) TCGA-BR-8591-01 17 15942757 15942757 T C NCOR1 Silent p.S2315S 0.23 TCGA-BR-8591-01 17 15973538 15973538 G T NCOR1 Missense_Mutation p.P1485H 0.21 probably_damaging(0.999) TCGA-BR-8591-01 17 1631762 1631762 G A WDR81 Missense_Mutation p.G1170E 0.23 tolerated(0.22) benign(0.005) TCGA-BR-8591-01 17 16327046 16327046 C A TRPV2 Missense_Mutation p.P297T 0.21 deleterious(0.02) probably_damaging(1) TCGA-BR-8591-01 17 1684630 1684630 T C SMYD4 Missense_Mutation p.K789E 0.09 tolerated(0.16) benign(0.02) TCGA-BR-8591-01 17 1684734 1684734 C A SMYD4 Splice_Site p.X754_splice 0.29 TCGA-BR-8591-01 17 17075078 17075078 A C MPRIP Missense_Mutation p.K737T 0.05 tolerated(0.06) possibly_damaging(0.775) TCGA-BR-8591-01 17 17697887 17697887 T C RAI1 Missense_Mutation p.V542A 0.27 tolerated(0.53) benign(0.008) TCGA-BR-8591-01 17 18077133 18077133 G A MYO15A Silent p.S3463S 0.31 TCGA-BR-8591-01 17 18140983 18140983 T A LLGL1 Silent p.A600A 0.27 TCGA-BR-8591-01 17 18151054 18151054 T C FLII Missense_Mutation p.K802E 0.26 deleterious(0) probably_damaging(1) TCGA-BR-8591-01 17 18157847 18157847 T C FLII Missense_Mutation p.H188R 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8591-01 17 18874389 18874389 G T SLC5A10 Missense_Mutation p.R235M 0.26 tolerated(0.12) possibly_damaging(0.819) TCGA-BR-8591-01 17 1961428 1961428 G A HIC1 Missense_Mutation p.G501R 0.30 deleterious(0) possibly_damaging(0.822) TCGA-BR-8591-01 17 19729453 19729453 T - ULK2 Frame_Shift_Del p.K278Nfs*130 0.19 TCGA-BR-8591-01 17 19744819 19744820 - T ULK2 Frame_Shift_Ins p.N229Kfs*7 0.27 TCGA-BR-8591-01 17 21217601 21217601 G A MAP2K3 3'UTR 0.17 TCGA-BR-8591-01 17 21909432 21909432 G T RP11-744K17.9 RNA 0.33 TCGA-BR-8591-01 17 2324130 2324130 G A METTL16 Silent p.S319S 0.24 TCGA-BR-8591-01 17 26669397 26669397 G A TNFAIP1 Missense_Mutation p.G215S 0.28 deleterious(0.04) possibly_damaging(0.725) TCGA-BR-8591-01 17 27042858 27042858 C A RAB34 Nonsense_Mutation p.E149* 0.24 TCGA-BR-8591-01 17 27869900 27869900 C T TAOK1 Nonsense_Mutation p.R956* 0.25 TCGA-BR-8591-01 17 3119024 3119024 T C OR1A1 Missense_Mutation p.I37T 0.27 tolerated(0.27) benign(0.007) TCGA-BR-8591-01 17 33689788 33689788 A G SLFN11 Missense_Mutation p.W347R 0.26 deleterious(0) probably_damaging(0.999) TCGA-BR-8591-01 17 34074093 34074093 G A GAS2L2 Missense_Mutation p.P343S 0.35 tolerated(0.45) benign(0.025) TCGA-BR-8591-01 17 34251627 34251627 A G RDM1 Silent p.P183P 0.29 TCGA-BR-8591-01 17 3475428 3475428 C G SHPK Missense_Mutation p.R740P 0.19 deleterious(0) probably_damaging(0.996) TCGA-BR-8591-01 17 35300394 35300395 - C LHX1 Frame_Shift_Ins p.E399Rfs*106 0.28 TCGA-BR-8591-01 17 3628052 3628052 C T GSG2 Silent p.L275L 0.25 TCGA-BR-8591-01 17 36896587 36896587 C - PCGF2 Frame_Shift_Del p.Y24Tfs*44 0.23 TCGA-BR-8591-01 17 38066132 38066132 C T GSDMB Silent p.T151T 0.16 TCGA-BR-8591-01 17 38146397 38146397 A G PSMD3 Missense_Mutation p.T310A 0.11 tolerated(0.15) benign(0.07) TCGA-BR-8591-01 17 3819547 3819548 - C P2RX1 5'UTR 0.24 TCGA-BR-8591-01 17 38324130 38324130 A G CASC3 Missense_Mutation p.H560R 0.22 tolerated(0.12) probably_damaging(0.996) TCGA-BR-8591-01 17 38978389 38978389 A G KRT10 Missense_Mutation p.M150T 0.17 deleterious(0) probably_damaging(0.985) TCGA-BR-8591-01 17 39296555 39296555 C T KRTAP4-6 Missense_Mutation p.R62H 0.30 tolerated(0.13) unknown(0) TCGA-BR-8591-01 17 39520151 39520151 G T KRT33B Silent p.S384S 0.22 TCGA-BR-8591-01 17 39767417 39767417 G A KRT16 Silent p.G279G 0.26 TCGA-BR-8591-01 17 40093140 40093140 C T TTC25 RNA 0.23 TCGA-BR-8591-01 17 40828492 40828492 G A PLEKHH3 Silent p.S30S 0.30 TCGA-BR-8591-01 17 40839807 40839807 G A CNTNAP1 Missense_Mutation p.V372I 0.29 tolerated(0.08) benign(0.002) TCGA-BR-8591-01 17 41008501 41008502 - C AOC3 Frame_Shift_Ins p.Q744Pfs*38 0.12 TCGA-BR-8591-01 17 41019639 41019639 G A AOC4P RNA 0.05 TCGA-BR-8591-01 17 41226527 41226527 G A BRCA1 Missense_Mutation p.S1520F 0.35 tolerated(0.25) benign(0.005) TCGA-BR-8591-01 17 41345126 41345126 C A NBR1 Silent p.P363P 0.17 TCGA-BR-8591-01 17 42160038 42160038 C - HDAC5 Frame_Shift_Del p.G842Dfs*8 0.25 TCGA-BR-8591-01 17 42397453 42397453 G - SLC25A39 Frame_Shift_Del p.S333Pfs*5 0.19 TCGA-BR-8591-01 17 42811492 42811492 G A DBF4B Silent p.A197A 0.31 TCGA-BR-8591-01 17 43907871 43907871 C T CRHR1 Missense_Mutation p.T244I 0.05 tolerated(0.19) possibly_damaging(0.449) TCGA-BR-8591-01 17 44249250 44249250 A G KANSL1 Missense_Mutation p.V87A 0.30 deleterious(0.01) probably_damaging(0.985) TCGA-BR-8591-01 17 4442644 4442644 A T MYBBP1A Intron 0.18 TCGA-BR-8591-01 17 4442846 4442846 T C MYBBP1A Missense_Mutation p.K1284R 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.89) TCGA-BR-8591-01 17 4685824 4685824 G A TM4SF5 Silent p.A95A 0.27 TCGA-BR-8591-01 17 47123659 47123659 T C IGF2BP1 Missense_Mutation p.V522A 0.04 deleterious(0.01) possibly_damaging(0.869) TCGA-BR-8591-01 17 48187467 48187467 G A PDK2 3'UTR 0.11 TCGA-BR-8591-01 17 48745215 48745215 G A ABCC3 Intron 0.27 TCGA-BR-8591-01 17 48750362 48750362 C T ABCC3 Missense_Mutation p.R758W 0.28 deleterious(0.01) probably_damaging(1) TCGA-BR-8591-01 17 4884998 4885000 CTC - CAMTA2 In_Frame_Del p.E203del 0.26 TCGA-BR-8591-01 17 49043750 49043750 T C SPAG9 Splice_Site p.X1284_splice 0.23 TCGA-BR-8591-01 17 4937492 4937492 G T SLC52A1 Missense_Mutation p.L98M 0.25 deleterious(0.01) probably_damaging(0.979) TCGA-BR-8591-01 17 5087385 5087385 A G ZNF594 Missense_Mutation p.M56T 0.29 tolerated(0.39) benign(0) TCGA-BR-8591-01 17 5137953 5137953 C T SCIMP Intron 0.25 TCGA-BR-8591-01 17 55189188 55189188 G A AKAP1 Silent p.Q626Q 0.13 TCGA-BR-8591-01 17 56344853 56344853 G A LPO Missense_Mutation p.A613T 0.27 deleterious(0.01) benign(0.084) TCGA-BR-8591-01 17 57289053 57289053 C T SMG8 Silent p.Y547Y 0.22 TCGA-BR-8591-01 17 58040355 58040355 C T RNFT1 Missense_Mutation p.R116Q 0.35 tolerated(0.27) benign(0.007) TCGA-BR-8591-01 17 58259002 58259002 G A USP32 Silent p.L1411L 0.22 TCGA-BR-8591-01 17 59560345 59560345 C - TBX4 Frame_Shift_Del p.P371Lfs*8 0.27 TCGA-BR-8591-01 17 60342435 60342435 T C TBC1D3P2 3'Flank 0.17 TCGA-BR-8591-01 17 60351194 60351194 T - TBC1D3P2 RNA 0.21 TCGA-BR-8591-01 17 61781058 61781058 G - STRADA Frame_Shift_Del p.I400Sfs*19 0.23 TCGA-BR-8591-01 17 62007589 62007589 T C CD79B Missense_Mutation p.E93G 0.28 tolerated(0.18) benign(0.076) TCGA-BR-8591-01 17 62265577 62265578 - G TEX2 Frame_Shift_Ins p.Q799Pfs*25 0.16 TCGA-BR-8591-01 17 62818377 62818377 C T RNU7-115P 3'Flank 0.22 TCGA-BR-8591-01 17 65733740 65733740 A C NOL11 Missense_Mutation p.K445N 0.27 deleterious(0.04) possibly_damaging(0.478) TCGA-BR-8591-01 17 66267454 66267454 G A SLC16A6 Silent p.L283L 0.21 TCGA-BR-8591-01 17 67152020 67152020 C T ABCA10 Missense_Mutation p.E1168K 0.24 tolerated(0.22) benign(0.404) TCGA-BR-8591-01 17 67298973 67298973 A C ABCA5 Silent p.T335T 0.27 TCGA-BR-8591-01 17 67305446 67305446 A G ABCA5 Silent p.F142F 0.20 TCGA-BR-8591-01 17 7130487 7130487 G T DVL2 Silent p.R489R 0.24 TCGA-BR-8591-01 17 71386498 71386498 G A SDK2 Missense_Mutation p.R1374C 0.22 deleterious(0.02) probably_damaging(0.985) TCGA-BR-8591-01 17 72338838 72338839 TT - KIF19 Frame_Shift_Del p.F101Cfs*40 0.18 TCGA-BR-8591-01 17 72345358 72345358 C T KIF19 Silent p.I361I 0.20 TCGA-BR-8591-01 17 72346664 72346664 C T KIF19 Silent p.R446R 0.25 TCGA-BR-8591-01 17 7240021 7240021 A G ACAP1 5'UTR 0.15 TCGA-BR-8591-01 17 72860170 72860170 C T FDXR Missense_Mutation p.R384H 0.24 tolerated(0.05) benign(0.021) TCGA-BR-8591-01 17 73208107 73208107 A T NUP85 Missense_Mutation p.N104I 0.32 deleterious(0.01) benign(0.365) TCGA-BR-8591-01 17 7324902 7324902 A G SPEM1 Missense_Mutation p.Y303C 0.17 deleterious(0) probably_damaging(0.966) TCGA-BR-8591-01 17 73554653 73554653 G T LLGL2 Missense_Mutation p.G106C 0.25 deleterious(0.01) benign(0.005) TCGA-BR-8591-01 17 73625168 73625168 C T RECQL5 Missense_Mutation p.A779T 0.28 tolerated(0.48) benign(0.02) TCGA-BR-8591-01 17 73894995 73894995 C T MRPL38 Missense_Mutation p.R360Q 0.32 tolerated(0.13) benign(0.003) TCGA-BR-8591-01 17 7416391 7416391 G A POLR2A Missense_Mutation p.R1603H 0.24 possibly_damaging(0.531) TCGA-BR-8591-01 17 74388088 74388089 - G UBE2O Frame_Shift_Ins p.H1018Pfs*18 0.30 TCGA-BR-8591-01 17 74473337 74473337 G - RHBDF2 Frame_Shift_Del p.P311Hfs*26 0.19 TCGA-BR-8591-01 17 7473797 7473797 C T SENP3 Missense_Mutation p.R489C 0.23 deleterious(0.01) probably_damaging(0.998) TCGA-BR-8591-01 17 75209468 75209468 G A SEC14L1 Missense_Mutation p.A646T 0.41 tolerated(0.14) benign(0.007) TCGA-BR-8591-01 17 76047111 76047111 G T TNRC6C Silent p.G656G 0.32 TCGA-BR-8591-01 17 78857713 78857713 G A RPTOR Missense_Mutation p.G595S 0.36 deleterious(0.01) probably_damaging(0.996) TCGA-BR-8591-01 17 78899222 78899222 C T RPTOR Missense_Mutation p.T954M 0.27 tolerated(0.15) benign(0.24) TCGA-BR-8591-01 17 79911029 79911029 G - NOTUM Frame_Shift_Del p.V434Sfs*28 0.23 TCGA-BR-8591-01 17 80038668 80038668 C T FASN Silent p.R2242R 0.10 TCGA-BR-8591-01 17 80146227 80146227 A G CCDC57 Missense_Mutation p.V307A 0.11 tolerated(1) benign(0.002) TCGA-BR-8591-01 17 8133224 8133224 G A CTC1 Missense_Mutation p.P999L 0.16 tolerated(0.14) benign(0.009) TCGA-BR-8591-01 17 8396272 8396272 T C MYH10 Missense_Mutation p.K1427R 0.19 benign(0.05) TCGA-BR-8591-01 17 8701551 8701551 C T MFSD6L Silent p.S296S 0.13 TCGA-BR-8591-01 17 900433 900433 T C TIMM22 Silent p.G17G 0.35 TCGA-BR-8591-01 17 9604465 9604465 C T USP43 Missense_Mutation p.A522V 0.27 tolerated(1) benign(0.002) TCGA-BR-8591-01 18 10680211 10680212 - A PIEZO2 Frame_Shift_Ins p.S2533Ffs*20 0.21 TCGA-BR-8591-01 18 12698966 12698966 A G PSMG2 5'Flank 0.38 TCGA-BR-8591-01 18 21396419 21396419 C T LAMA3 Silent p.C705C 0.25 TCGA-BR-8591-01 18 30350328 30350328 T C KLHL14 Missense_Mutation p.D76G 0.23 deleterious_low_confidence(0.01) benign(0.213) TCGA-BR-8591-01 18 31319986 31319986 A - ASXL3 Frame_Shift_Del p.V876Cfs*59 0.29 TCGA-BR-8591-01 18 31325872 31325872 A G ASXL3 Silent p.P2020P 0.42 TCGA-BR-8591-01 18 3151848 3151849 GT - MYOM1 Frame_Shift_Del p.P563Cfs*26 0.23 TCGA-BR-8591-01 18 34833888 34833888 G A CELF4 Silent p.F449F 0.30 TCGA-BR-8591-01 18 34854462 34854462 C T CELF4 Intron 0.16 TCGA-BR-8591-01 18 44336400 44336400 G A ST8SIA5 Silent p.C24C 0.33 TCGA-BR-8591-01 18 48331614 48331614 A C MRO Silent p.T127T 0.26 TCGA-BR-8591-01 18 56203904 56203904 G A ALPK2 Missense_Mutation p.T1172M 0.26 tolerated(0.14) benign(0.001) TCGA-BR-8591-01 18 56586448 56586448 C T ZNF532 Missense_Mutation p.A310V 0.22 tolerated(0.22) benign(0.005) TCGA-BR-8591-01 18 61260183 61260183 C A SERPINB13 Silent p.S150S 0.18 TCGA-BR-8591-01 18 67425053 67425053 C T DOK6 Missense_Mutation p.A267V 0.31 deleterious(0.02) benign(0.285) TCGA-BR-8591-01 18 67813014 67813014 C T RTTN Missense_Mutation p.R772H 0.23 deleterious(0) probably_damaging(1) TCGA-BR-8591-01 18 67817853 67817853 G A RTTN Silent p.P682P 0.22 TCGA-BR-8591-01 18 6876205 6876205 A T ARHGAP28 Nonsense_Mutation p.K271* 0.39 TCGA-BR-8591-01 18 74607130 74607130 C T ZNF236 Silent p.L525L 0.05 TCGA-BR-8591-01 18 74637264 74637264 C T ZNF236 Missense_Mutation p.R1259C 0.35 deleterious(0) probably_damaging(1) TCGA-BR-8591-01 18 77917966 77917966 G A PARD6G Silent p.T273T 0.33 TCGA-BR-8591-01 18 8783624 8783624 G A SOGA2 Missense_Mutation p.E172K 0.33 tolerated(0.06) benign(0.138) TCGA-BR-8591-01 18 8784564 8784564 G A SOGA2 Missense_Mutation p.R485Q 0.29 tolerated(0.83) benign(0.001) TCGA-BR-8591-01 19 10166319 10166319 C T C3P1 RNA 0.14 TCGA-BR-8591-01 19 10200691 10200691 G A C19orf66 Missense_Mutation p.V118I 0.20 tolerated(0.3) benign(0.049) TCGA-BR-8591-01 19 10461637 10461637 T C TYK2 Missense_Mutation p.H1146R 0.09 tolerated(0.69) benign(0) TCGA-BR-8591-01 19 11145661 11145661 C T SMARCA4 Silent p.D1341D 0.24 TCGA-BR-8591-01 19 12061033 12061033 T C ZNF700 Missense_Mutation p.Y732H 0.45 deleterious(0.04) probably_damaging(0.994) TCGA-BR-8591-01 19 12127030 12127030 G A ZNF433 Nonsense_Mutation p.R218* 0.28 TCGA-BR-8591-01 19 12902621 12902621 C T JUNB Silent p.D12D 0.17 TCGA-BR-8591-01 19 13246114 13246114 C T NACC1 Silent p.D31D 0.29 TCGA-BR-8591-01 19 13941323 13941323 G A ZSWIM4 Missense_Mutation p.R810H 0.27 deleterious(0.01) unknown(0) TCGA-BR-8591-01 19 1395407 1395407 G A NDUFS7 Missense_Mutation p.E188K 0.62 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-BR-8591-01 19 14044132 14044132 C T PODNL1 Missense_Mutation p.G309R 0.26 tolerated(0.93) benign(0.029) TCGA-BR-8591-01 19 14199317 14199317 C A SAMD1 Missense_Mutation p.G404V 0.32 deleterious(0) probably_damaging(1) TCGA-BR-8591-01 19 14865776 14865776 T C EMR2 Missense_Mutation p.Y527C 0.12 deleterious(0.02) benign(0.077) TCGA-BR-8591-01 19 15342847 15342847 C T EPHX3 Missense_Mutation p.R59H 0.29 tolerated(0.12) benign(0.151) TCGA-BR-8591-01 19 15364530 15364530 G A BRD4 Intron 0.24 TCGA-BR-8591-01 19 15580564 15580564 G A PGLYRP2 Missense_Mutation p.A507V 0.21 deleterious(0) probably_damaging(0.997) TCGA-BR-8591-01 19 16595981 16595981 C T CALR3 Missense_Mutation p.R162K 0.16 tolerated(0.4) benign(0.006) TCGA-BR-8591-01 19 16687442 16687442 C T MED26 Missense_Mutation p.R400Q 0.33 deleterious(0.01) possibly_damaging(0.73) TCGA-BR-8591-01 19 16790893 16790893 G T TMEM38A Nonsense_Mutation p.E75* 0.33 TCGA-BR-8591-01 19 17396288 17396288 G A ANKLE1 Silent p.E475E 0.09 TCGA-BR-8591-01 19 17679430 17679430 C T COLGALT1 Missense_Mutation p.A246V 0.30 deleterious(0.04) benign(0.063) TCGA-BR-8591-01 19 17756598 17756598 G A UNC13A Silent p.D747D 0.19 TCGA-BR-8591-01 19 1789491 1789491 T C ATP8B3 Missense_Mutation p.K905R 0.27 tolerated(0.57) benign(0.004) TCGA-BR-8591-01 19 17974063 17974065 CTT - RPL18A In_Frame_Del p.F176del 0.29 TCGA-BR-8591-01 19 18499387 18499387 G - GDF15 Frame_Shift_Del p.R192Afs*46 0.29 TCGA-BR-8591-01 19 18876267 18876267 C G CRTC1 Missense_Mutation p.L330V 0.31 deleterious(0.02) probably_damaging(0.999) TCGA-BR-8591-01 19 18888054 18888054 C T CRTC1 Silent p.F605F 0.30 TCGA-BR-8591-01 19 1918180 1918180 G A SCAMP4 Missense_Mutation p.G64D 0.25 tolerated(0.46) possibly_damaging(0.606) TCGA-BR-8591-01 19 19218784 19218784 C T SLC25A42 Silent p.T193T 0.28 TCGA-BR-8591-01 19 19655029 19655029 C A CILP2 Missense_Mutation p.P559T 0.24 tolerated(0.09) benign(0.152) TCGA-BR-8591-01 19 20002392 20002392 A - ZNF253 Frame_Shift_Del p.G115Afs*22 0.20 TCGA-BR-8591-01 19 20307886 20307886 A - ZNF486 Frame_Shift_Del p.G125Afs*22 0.18 TCGA-BR-8591-01 19 20308120 20308120 A - ZNF486 Frame_Shift_Del p.I203Lfs*28 0.17 TCGA-BR-8591-01 19 21240479 21240479 A G ZNF430 Silent p.K455K 0.21 TCGA-BR-8591-01 19 21934392 21934392 A G ZNF100 Intron 0.19 TCGA-BR-8591-01 19 21992322 21992322 G T ZNF43 Missense_Mutation p.L173I 0.35 tolerated(0.29) possibly_damaging(0.484) TCGA-BR-8591-01 19 2226315 2226315 C T DOT1L Silent p.S1265S 0.16 TCGA-BR-8591-01 19 2255261 2255261 C T JSRP1 Missense_Mutation p.C18Y 0.32 deleterious(0) probably_damaging(0.919) TCGA-BR-8591-01 19 23299958 23299958 C - ZNF730 5'UTR 0.26 TCGA-BR-8591-01 19 23405833 23405833 G A ZNF724P Missense_Mutation p.T405I 0.35 tolerated(0.42) benign(0.303) TCGA-BR-8591-01 19 24309953 24309953 G A ZNF254 Missense_Mutation p.G384D 0.34 deleterious(0.04) possibly_damaging(0.452) TCGA-BR-8591-01 19 30193764 30193764 G A C19orf12 Missense_Mutation p.A105V 0.18 tolerated(0.18) benign(0.251) TCGA-BR-8591-01 19 30193868 30193868 C - C19orf12 Frame_Shift_Del p.L71Cfs*2 0.25 TCGA-BR-8591-01 19 3381902 3381902 C T NFIC Missense_Mutation p.R75W 0.36 deleterious(0) probably_damaging(1) TCGA-BR-8591-01 19 33980942 33980942 C T PEPD Missense_Mutation p.G155S 0.21 deleterious(0.01) benign(0.137) TCGA-BR-8591-01 19 34838876 34838876 C - KIAA0355 Frame_Shift_Del p.R874Gfs*93 0.23 TCGA-BR-8591-01 19 34934770 34934770 T C UBA2 Silent p.D201D 0.27 TCGA-BR-8591-01 19 35517005 35517005 C T GRAMD1A Missense_Mutation p.P712L 0.25 deleterious(0) probably_damaging(0.994) TCGA-BR-8591-01 19 35941299 35941299 T G FFAR2 Missense_Mutation p.L228R 0.23 deleterious(0) probably_damaging(1) TCGA-BR-8591-01 19 36050092 36050092 A C ATP4A Missense_Mutation p.V353G 0.16 deleterious(0) probably_damaging(0.998) TCGA-BR-8591-01 19 36210764 36210764 C - KMT2B Frame_Shift_Del p.P174Qfs*20 0.28 TCGA-BR-8591-01 19 36211209 36211209 C A KMT2B Silent p.S320S 0.36 TCGA-BR-8591-01 19 36223175 36223175 C - KMT2B Frame_Shift_Del p.R1911Dfs*23 0.25 TCGA-BR-8591-01 19 36228041 36228041 C T KMT2B Missense_Mutation p.A2476V 0.13 benign(0.125) TCGA-BR-8591-01 19 36297674 36297674 G T PRODH2 Missense_Mutation p.P322H 0.28 deleterious(0.01) benign(0.376) TCGA-BR-8591-01 19 376009 376009 C T THEG 5'UTR 0.23 TCGA-BR-8591-01 19 38102620 38102620 A - ZNF540 Frame_Shift_Del p.M149Cfs*12 0.22 TCGA-BR-8591-01 19 38102983 38102983 A - ZNF540 Frame_Shift_Del p.K269Nfs*16 0.10 TCGA-BR-8591-01 19 38572874 38572874 C T SIPA1L3 Silent p.N223N 0.20 TCGA-BR-8591-01 19 38684402 38684402 G A SIPA1L3 Missense_Mutation p.G1608S 0.35 tolerated(0.18) benign(0.02) TCGA-BR-8591-01 19 38778555 38778555 C T SPINT2 Missense_Mutation p.A106V 0.23 tolerated(0.11) benign(0.014) TCGA-BR-8591-01 19 38782648 38782648 C T SPINT2 3'UTR 0.27 TCGA-BR-8591-01 19 38876364 38876364 G A GGN Missense_Mutation p.A513V 0.12 tolerated_low_confidence(0.3) unknown(0) TCGA-BR-8591-01 19 38899406 38899406 G A FAM98C Missense_Mutation p.V312I 0.36 deleterious(0.01) possibly_damaging(0.683) TCGA-BR-8591-01 19 38994880 38994880 G A RYR1 Silent p.E2649E 0.27 TCGA-BR-8591-01 19 39018309 39018309 G A RYR1 Missense_Mutation p.R3570H 0.30 benign(0.094) TCGA-BR-8591-01 19 3959164 3959164 C T DAPK3 Missense_Mutation p.V434M 0.44 tolerated_low_confidence(0.06) benign(0.223) TCGA-BR-8591-01 19 39819208 39819208 G A GMFG Intron 0.24 TCGA-BR-8591-01 19 39882043 39882043 C T MED29 Missense_Mutation p.P15L 0.30 deleterious_low_confidence(0.02) possibly_damaging(0.726) TCGA-BR-8591-01 19 4013167 4013167 C T PIAS4 Missense_Mutation p.R92W 0.24 deleterious(0.02) benign(0.409) TCGA-BR-8591-01 19 40398294 40398294 C T FCGBP Missense_Mutation p.V2225M 0.20 possibly_damaging(0.86) TCGA-BR-8591-01 19 40433949 40433949 G A FCGBP Missense_Mutation p.A107V 0.20 possibly_damaging(0.603) TCGA-BR-8591-01 19 40828158 40828158 C A C19orf47 Silent p.R300R 0.25 TCGA-BR-8591-01 19 40901573 40901573 A G PRX Missense_Mutation p.F896L 0.16 tolerated_low_confidence(0.08) benign(0.294) TCGA-BR-8591-01 19 41383195 41383195 G A CYP2A7 Missense_Mutation p.A354V 0.23 deleterious(0) probably_damaging(1) TCGA-BR-8591-01 19 41822577 41822577 G A CCDC97 Missense_Mutation p.R112H 0.22 tolerated(0.41) benign(0.004) TCGA-BR-8591-01 19 41825583 41825583 C A CCDC97 Missense_Mutation p.P203T 0.29 tolerated(0.09) benign(0.446) TCGA-BR-8591-01 19 42301803 42301803 A C CEACAM3 Missense_Mutation p.D116A 0.24 deleterious(0) probably_damaging(0.985) TCGA-BR-8591-01 19 42383115 42383115 C T CD79A Silent p.S45S 0.32 TCGA-BR-8591-01 19 42406803 42406803 G A ARHGEF1 Missense_Mutation p.V555M 0.33 tolerated(0.18) possibly_damaging(0.586) TCGA-BR-8591-01 19 42482399 42482399 C T ATP1A3 Silent p.T583T 0.17 TCGA-BR-8591-01 19 43420541 43420541 C T PSG6 Missense_Mutation p.V55I 0.22 deleterious(0.03) benign(0.237) TCGA-BR-8591-01 19 43579535 43579535 C T PSG2 Missense_Mutation p.R227H 0.22 tolerated(0.12) possibly_damaging(0.701) TCGA-BR-8591-01 19 44611445 44611445 G A ZNF224 Missense_Mutation p.G378R 0.30 deleterious(0) probably_damaging(1) TCGA-BR-8591-01 19 44982338 44982338 T - ZNF180 Frame_Shift_Del p.D121Ifs*17 0.19 TCGA-BR-8591-01 19 4498835 4498835 C A HDGFRP2 Missense_Mutation p.L500I 0.30 deleterious(0.01) possibly_damaging(0.567) TCGA-BR-8591-01 19 45262879 45262880 - G BCL3 3'UTR 0.23 TCGA-BR-8591-01 19 46002428 46002428 T C PPM1N Missense_Mutation p.L233S 0.28 deleterious(0) probably_damaging(0.99) TCGA-BR-8591-01 19 46274895 46274895 G A DMPK Missense_Mutation p.R521W 0.14 deleterious(0.02) possibly_damaging(0.901) TCGA-BR-8591-01 19 46811551 46811551 C - HIF3A Frame_Shift_Del p.Q148Sfs*21 0.23 TCGA-BR-8591-01 19 47127183 47127183 G T PTGIR Silent p.T100T 0.29 TCGA-BR-8591-01 19 47201052 47201052 G A PRKD2 Missense_Mutation p.R393W 0.28 deleterious(0.01) possibly_damaging(0.65) TCGA-BR-8591-01 19 47570534 47570534 G A ZC3H4 Silent p.P997P 0.31 TCGA-BR-8591-01 19 47960734 47960734 G A SLC8A2 Missense_Mutation p.R265C 0.37 deleterious(0) possibly_damaging(0.807) TCGA-BR-8591-01 19 48183378 48183378 C T GLTSCR1 Silent p.T317T 0.43 TCGA-BR-8591-01 19 48892969 48892969 C T KDELR1 Splice_Site p.X65_splice 0.26 TCGA-BR-8591-01 19 49120017 49120017 T C RPL18 Missense_Mutation p.D88G 0.29 deleterious(0) probably_damaging(0.984) TCGA-BR-8591-01 19 49184153 49184153 C T RN7SL345P 5'Flank 0.31 TCGA-BR-8591-01 19 49232772 49232773 - C RASIP1 Frame_Shift_Ins p.S419Vfs*27 0.29 TCGA-BR-8591-01 19 49631308 49631308 C T PPFIA3 Silent p.L60L 0.21 TCGA-BR-8591-01 19 50361197 50361197 C T PTOV1 Silent p.L281L 0.23 TCGA-BR-8591-01 19 50412227 50412227 T C NUP62 Missense_Mutation p.T280A 0.26 tolerated(0.22) benign(0.001) TCGA-BR-8591-01 19 50412228 50412228 G A NUP62 Silent p.A279A 0.26 TCGA-BR-8591-01 19 50512565 50512565 G A VRK3 Nonsense_Mutation p.R73* 0.22 TCGA-BR-8591-01 19 50905959 50905959 C T POLD1 Missense_Mutation p.R311C 0.45 deleterious(0) probably_damaging(0.996) TCGA-BR-8591-01 19 50926122 50926122 C - SPIB Frame_Shift_Del p.Y58Mfs*122 0.26 TCGA-BR-8591-01 19 51412062 51412062 A G KLK4 Missense_Mutation p.L83P 0.14 tolerated(0.1) probably_damaging(1) TCGA-BR-8591-01 19 51561889 51561889 C T KLK13 Missense_Mutation p.R184H 0.24 tolerated(0.34) benign(0.126) TCGA-BR-8591-01 19 52023335 52023335 C A SIGLEC6 3'UTR 0.26 TCGA-BR-8591-01 19 52216727 52216727 G A HAS1 Missense_Mutation p.R564W 0.14 deleterious(0.01) unknown(0) TCGA-BR-8591-01 19 52249490 52249490 C T FPR1 Missense_Mutation p.C253Y 0.24 deleterious(0) probably_damaging(0.999) TCGA-BR-8591-01 19 5244257 5244257 C T PTPRS Missense_Mutation p.G409S 0.29 deleterious(0) probably_damaging(1) TCGA-BR-8591-01 19 52660033 52660033 C T ZNF836 Silent p.P301P 0.27 TCGA-BR-8591-01 19 53117419 53117419 T - ZNF83 Frame_Shift_Del p.K133Nfs*120 0.24 TCGA-BR-8591-01 19 53343882 53343882 A G ZNF468 3'UTR 0.24 TCGA-BR-8591-01 19 53645115 53645115 A T ZNF347 Nonsense_Mutation p.C323* 0.05 TCGA-BR-8591-01 19 53885570 53885570 A - ZNF525 3'UTR 0.20 TCGA-BR-8591-01 19 54418710 54418710 G A CACNG7 Silent p.P125P 0.26 TCGA-BR-8591-01 19 54444871 54444871 T C CACNG7 Splice_Site p.X190_splice 0.25 TCGA-BR-8591-01 19 54660546 54660546 C T LENG1 Missense_Mutation p.R177H 0.23 tolerated(0.22) benign(0) TCGA-BR-8591-01 19 54677813 54677813 A G MBOAT7 Silent p.G448G 0.20 TCGA-BR-8591-01 19 54744364 54744364 C A LILRA6 Silent p.R348R 0.12 TCGA-BR-8591-01 19 54822560 54822560 C A LILRA5 Intron 0.19 TCGA-BR-8591-01 19 54947281 54947281 G A TTYH1 Missense_Mutation p.A427T 0.19 tolerated(0.45) benign(0.039) TCGA-BR-8591-01 19 55451098 55451098 G A NLRP7 Silent p.P363P 0.08 TCGA-BR-8591-01 19 55568112 55568112 G A RDH13 Silent p.R83R 0.30 TCGA-BR-8591-01 19 55597445 55597445 G A EPS8L1 Missense_Mutation p.R512H 0.24 tolerated(0.16) probably_damaging(0.987) TCGA-BR-8591-01 19 56223313 56223313 C T NLRP9 Missense_Mutation p.R899H 0.23 tolerated(0.2) benign(0.001) TCGA-BR-8591-01 19 56244406 56244406 T - NLRP9 Frame_Shift_Del p.K264Rfs*12 0.19 TCGA-BR-8591-01 19 56321601 56321601 C T NLRP11 Silent p.S125S 0.12 TCGA-BR-8591-01 19 56733224 56733224 C T ZSCAN5A Missense_Mutation p.R404Q 0.17 tolerated(0.06) possibly_damaging(0.847) TCGA-BR-8591-01 19 57176222 57176222 G A ZNF835 Silent p.C115C 0.24 TCGA-BR-8591-01 19 57840642 57840642 A G ZNF543 3'UTR 0.18 TCGA-BR-8591-01 19 5785513 5785513 G A CTB-54O9.9 Silent p.P9P 0.30 TCGA-BR-8591-01 19 58049657 58049657 A - ZNF549 Frame_Shift_Del p.R431Dfs*206 0.23 TCGA-BR-8591-01 19 58115649 58115649 T - ZNF530 Frame_Shift_Del p.F13Lfs*2 0.24 TCGA-BR-8591-01 19 58367565 58367565 G A CTD-2583A14.10 Missense_Mutation p.V43M 0.27 deleterious(0) probably_damaging(1) TCGA-BR-8591-01 19 58384974 58384974 T C ZNF814 Missense_Mutation p.Q595R 0.08 tolerated(0.13) benign(0.344) TCGA-BR-8591-01 19 58438212 58438212 C T ZNF418 Missense_Mutation p.R446Q 0.33 deleterious(0) benign(0.001) TCGA-BR-8591-01 19 58453320 58453320 G A ZNF256 Nonsense_Mutation p.R286* 0.25 TCGA-BR-8591-01 19 58549600 58549600 G T ZSCAN1 Intron 0.23 TCGA-BR-8591-01 19 58718166 58718166 G T ZNF274 Missense_Mutation p.E112D 0.28 deleterious(0.01) probably_damaging(0.978) TCGA-BR-8591-01 19 58774166 58774166 A G ZNF544 3'UTR 0.23 TCGA-BR-8591-01 19 58805539 58805539 C T ZNF8 Missense_Mutation p.T122M 0.32 tolerated(0.21) benign(0.01) TCGA-BR-8591-01 19 5915081 5915081 G A CAPS Missense_Mutation p.R131H 0.24 tolerated(0.07) benign(0.443) TCGA-BR-8591-01 19 613971 613971 C T HCN2 Missense_Mutation p.R649W 0.41 deleterious(0) possibly_damaging(0.632) TCGA-BR-8591-01 19 6312428 6312428 A G ACER1 Missense_Mutation p.I59T 0.25 tolerated(0.09) benign(0.297) TCGA-BR-8591-01 19 6467757 6467758 - G DENND1C Frame_Shift_Ins p.T722Hfs*6 0.26 TCGA-BR-8591-01 19 758640 758640 G A MISP Missense_Mutation p.R565Q 0.31 deleterious(0) probably_damaging(1) TCGA-BR-8591-01 19 7623981 7623981 C T PNPLA6 Missense_Mutation p.R1225C 0.25 deleterious(0) probably_damaging(0.977) TCGA-BR-8591-01 19 7676704 7676704 C T CAMSAP3 Missense_Mutation p.P469L 0.23 tolerated(0.18) benign(0.146) TCGA-BR-8591-01 19 7927323 7927323 C T EVI5L Missense_Mutation p.A617V 0.14 tolerated(0.27) benign(0) TCGA-BR-8591-01 19 7976044 7976047 AGTG - MAP2K7 Splice_Site p.X285_splice 0.19 TCGA-BR-8591-01 19 7976149 7976149 C - MAP2K7 Frame_Shift_Del p.P292Qfs*119 0.27 TCGA-BR-8591-01 19 8620596 8620596 C T MYO1F Missense_Mutation p.E30K 0.20 deleterious(0) probably_damaging(0.991) TCGA-BR-8591-01 19 8670086 8670086 C T ADAMTS10 Silent p.S82S 0.20 TCGA-BR-8591-01 19 9068980 9068980 C T MUC16 Missense_Mutation p.A6156T 0.19 unknown(0) TCGA-BR-8591-01 19 9069065 9069065 T C MUC16 Silent p.S6127S 0.19 TCGA-BR-8591-01 1 100731778 100731778 C A RTCA 5'Flank 0.45 TCGA-BR-8591-01 1 10521701 10521701 T A DFFA Missense_Mutation p.K281M 0.22 deleterious(0) probably_damaging(0.927) TCGA-BR-8591-01 1 10705023 10705023 T C CASZ1 Silent p.A1273A 0.24 TCGA-BR-8591-01 1 108115957 108115957 T C VAV3 Missense_Mutation p.E847G 0.28 deleterious_low_confidence(0) possibly_damaging(0.606) TCGA-BR-8591-01 1 109560141 109560141 T - WDR47 Frame_Shift_Del p.R81Gfs*7 0.14 TCGA-BR-8591-01 1 109756545 109756545 G A SARS 5'UTR 0.22 TCGA-BR-8591-01 1 109812696 109812696 G A CELSR2 Missense_Mutation p.A2417T 0.22 tolerated(0.11) benign(0.05) TCGA-BR-8591-01 1 109813580 109813580 C T CELSR2 Silent p.Y2505Y 0.29 TCGA-BR-8591-01 1 110091425 110091425 A G GNAI3 Missense_Mutation p.E28G 0.22 tolerated(0.13) possibly_damaging(0.541) TCGA-BR-8591-01 1 114248546 114248546 A - PHTF1 Frame_Shift_Del p.F546Sfs*2 0.27 TCGA-BR-8591-01 1 114357544 114357544 G A PTPN22 Missense_Mutation p.P803S 0.16 tolerated(0.3) benign(0.076) TCGA-BR-8591-01 1 115276643 115276643 G A CSDE1 Silent p.G272G 0.07 TCGA-BR-8591-01 1 1154278 1154278 G A SDF4 Missense_Mutation p.R203C 0.22 deleterious(0) probably_damaging(0.999) TCGA-BR-8591-01 1 11561152 11561152 G T PTCHD2 Missense_Mutation p.G35W 0.30 deleterious_low_confidence(0) possibly_damaging(0.471) TCGA-BR-8591-01 1 11561770 11561770 G A PTCHD2 Missense_Mutation p.A241T 0.22 tolerated(0.62) benign(0.001) TCGA-BR-8591-01 1 11733437 11733437 A G FBXO6 Missense_Mutation p.I205V 0.11 tolerated(0.25) benign(0.068) TCGA-BR-8591-01 1 120165750 120165750 C T ZNF697 Missense_Mutation p.E406K 0.27 deleterious(0) probably_damaging(0.998) TCGA-BR-8591-01 1 120165980 120165980 C G ZNF697 Missense_Mutation p.S329T 0.33 deleterious(0.03) probably_damaging(0.935) TCGA-BR-8591-01 1 120279828 120279828 G A PHGDH Missense_Mutation p.C295Y 0.30 deleterious(0) probably_damaging(0.995) TCGA-BR-8591-01 1 12337865 12337865 T C VPS13D Missense_Mutation p.I1407T 0.23 possibly_damaging(0.887) TCGA-BR-8591-01 1 12557635 12557635 G A VPS13D Silent p.A4248A 0.26 TCGA-BR-8591-01 1 12628448 12628448 A T DHRS3 Missense_Mutation p.L277H 0.28 deleterious(0) possibly_damaging(0.625) TCGA-BR-8591-01 1 1277817 1277817 C T DVL1 Silent p.T96T 0.28 TCGA-BR-8591-01 1 12853640 12853640 G A PRAMEF1 Silent p.L88L 0.14 TCGA-BR-8591-01 1 13942443 13942443 A - PDPN 3'UTR 0.11 TCGA-BR-8591-01 1 142713751 142713751 A C RP11-417J8.6 RNA 0.27 TCGA-BR-8591-01 1 144873923 144873923 C A PDE4DIP Missense_Mutation p.L1678F 0.13 tolerated(0.14) benign(0.037) TCGA-BR-8591-01 1 147090821 147090821 C A BCL9 Missense_Mutation p.P287H 0.20 tolerated(0.09) benign(0.088) TCGA-BR-8591-01 1 147096167 147096167 G A BCL9 Missense_Mutation p.G1230R 0.20 deleterious(0) probably_damaging(0.999) TCGA-BR-8591-01 1 150463946 150463946 A G TARS2 Missense_Mutation p.R197G 0.24 deleterious(0.01) possibly_damaging(0.493) TCGA-BR-8591-01 1 151006351 151006351 A - PRUNE Frame_Shift_Del p.N335Tfs*32 0.20 TCGA-BR-8591-01 1 151112138 151112138 T C SEMA6C Silent p.E91E 0.27 TCGA-BR-8591-01 1 151261038 151261038 G A ZNF687 Missense_Mutation p.R717H 0.31 tolerated(0.2) benign(0.002) TCGA-BR-8591-01 1 151261079 151261079 C - ZNF687 Frame_Shift_Del p.H733Mfs*30 0.27 TCGA-BR-8591-01 1 151373007 151373007 C T PSMB4 Missense_Mutation p.S146L 0.28 deleterious(0) possibly_damaging(0.823) TCGA-BR-8591-01 1 151611552 151611552 T C SNX27 Missense_Mutation p.V167A 0.32 deleterious(0) benign(0.142) TCGA-BR-8591-01 1 151993647 151993647 C T NBPF18P Intron 0.24 TCGA-BR-8591-01 1 152326237 152326237 C G FLG2 Missense_Mutation p.R1342T 0.27 benign(0.168) TCGA-BR-8591-01 1 152573549 152573549 C A LCE3C 3'UTR 0.10 TCGA-BR-8591-01 1 152770558 152770558 G - LCE1D Frame_Shift_Del p.G98Afs*? 0.20 TCGA-BR-8591-01 1 152957933 152957933 C T SPRR1A Missense_Mutation p.T76M 0.21 tolerated(0.07) probably_damaging(0.996) TCGA-BR-8591-01 1 153012733 153012734 - G SPRR2D Frame_Shift_Ins p.K31Efs*4 0.22 TCGA-BR-8591-01 1 153317826 153317826 G A PGLYRP4 Missense_Mutation p.R58C 0.18 deleterious(0.03) benign(0.035) TCGA-BR-8591-01 1 153735839 153735839 G A INTS3 Splice_Site p.X589_splice 0.14 TCGA-BR-8591-01 1 153902880 153902880 G T DENND4B Missense_Mutation p.L1462M 0.07 deleterious(0) probably_damaging(0.996) TCGA-BR-8591-01 1 154026855 154026855 T C NUP210L Missense_Mutation p.Q1111R 0.21 deleterious(0.01) probably_damaging(0.99) TCGA-BR-8591-01 1 155583916 155583916 C T MSTO1 Missense_Mutation p.A522V 0.12 tolerated(0.09) benign(0.091) TCGA-BR-8591-01 1 158263068 158263068 T A CD1C Missense_Mutation p.L319H 0.10 deleterious(0) probably_damaging(0.963) TCGA-BR-8591-01 1 158725149 158725149 C A OR6K6 Missense_Mutation p.L182I 0.22 tolerated(0.13) benign(0.07) TCGA-BR-8591-01 1 160000177 160000178 - A PIGM 3'UTR 0.24 TCGA-BR-8591-01 1 160293315 160293315 G A COPA Silent p.H204H 0.26 TCGA-BR-8591-01 1 161953870 161953870 G C OLFML2B Silent p.G616G 0.30 TCGA-BR-8591-01 1 16255775 16255775 G A SPEN Missense_Mutation p.V1014M 0.11 benign(0.392) TCGA-BR-8591-01 1 162722911 162722911 T G DDR2 Missense_Mutation p.S37A 0.14 tolerated(0.09) benign(0.082) TCGA-BR-8591-01 1 16460035 16460035 A G EPHA2 Missense_Mutation p.L602S 0.08 deleterious(0.05) possibly_damaging(0.889) TCGA-BR-8591-01 1 165514113 165514113 G A LRRC52 Missense_Mutation p.D194N 0.21 deleterious(0.02) benign(0.053) TCGA-BR-8591-01 1 167889284 167889284 A - MPC2 Frame_Shift_Del p.W94Gfs*28 0.19 TCGA-BR-8591-01 1 167962611 167962611 T - DCAF6 Frame_Shift_Del p.F280Lfs*31 0.21 TCGA-BR-8591-01 1 1685059 1685059 T C NADK Silent p.T522T 0.21 TCGA-BR-8591-01 1 17084144 17084144 T C MST1L RNA 0.06 TCGA-BR-8591-01 1 172579025 172579025 G A SUCO Missense_Mutation p.A1131T 0.24 tolerated(0.22) benign(0.021) TCGA-BR-8591-01 1 173833967 173833967 G A ZBTB37 5'Flank 0.26 TCGA-BR-8591-01 1 173886373 173886373 C A SERPINC1 Missense_Mutation p.V9L 0.30 tolerated_low_confidence(0.34) benign(0) TCGA-BR-8591-01 1 175097225 175097225 G A TNN Missense_Mutation p.A1035T 0.24 tolerated(0.22) benign(0.007) TCGA-BR-8591-01 1 175372558 175372558 C T TNR Missense_Mutation p.E232K 0.25 tolerated(0.07) benign(0.217) TCGA-BR-8591-01 1 176175737 176175737 G T RFWD2 Silent p.S126S 0.20 TCGA-BR-8591-01 1 176564578 176564578 G A PAPPA2 Missense_Mutation p.R613H 0.21 tolerated(0.08) probably_damaging(0.995) TCGA-BR-8591-01 1 177250123 177250123 C A BRINP2 Missense_Mutation p.P604H 0.25 deleterious(0) probably_damaging(0.998) TCGA-BR-8591-01 1 17735597 17735597 G - RCC2 Frame_Shift_Del p.R520Efs*55 0.20 TCGA-BR-8591-01 1 179304653 179304653 T - SOAT1 Frame_Shift_Del p.F65Lfs*2 0.17 TCGA-BR-8591-01 1 17945850 17945850 G C ARHGEF10L Missense_Mutation p.E284D 0.25 tolerated(0.22) benign(0.106) TCGA-BR-8591-01 1 179632554 179632554 G A TDRD5 Silent p.T859T 0.30 TCGA-BR-8591-01 1 179886945 179886945 C T TOR1AIP1 Silent p.A441A 0.26 TCGA-BR-8591-01 1 180166065 180166065 T G QSOX1 Missense_Mutation p.C713G 0.25 deleterious(0) probably_damaging(0.965) TCGA-BR-8591-01 1 180166219 180166219 C A QSOX1 3'UTR 0.15 TCGA-BR-8591-01 1 180905132 180905132 C T KIAA1614 Missense_Mutation p.T696M 0.22 tolerated(0.21) benign(0.174) TCGA-BR-8591-01 1 181741239 181741239 T C CACNA1E Missense_Mutation p.S1671P 0.20 deleterious(0) possibly_damaging(0.637) TCGA-BR-8591-01 1 182869223 182869223 T - SHCBP1L Frame_Shift_Del p.D620Mfs*8 0.29 TCGA-BR-8591-01 1 183881389 183881389 A G RGL1 Missense_Mutation p.E614G 0.31 tolerated(0.42) benign(0.002) TCGA-BR-8591-01 1 185108537 185108537 C A TRMT1L Missense_Mutation p.K428N 0.22 deleterious(0.02) probably_damaging(0.969) TCGA-BR-8591-01 1 193149709 193149709 A - B3GALT2 Frame_Shift_Del p.F328Lfs*5 0.23 TCGA-BR-8591-01 1 19404515 19404515 G A UBR4 Silent p.S5093S 0.15 TCGA-BR-8591-01 1 19433462 19433462 T C UBR4 Splice_Site p.X4036_splice 0.33 TCGA-BR-8591-01 1 19583571 19583571 A - MRTO4 Frame_Shift_Del p.N70Tfs*3 0.23 TCGA-BR-8591-01 1 197169466 197169466 T G ZBTB41 Missense_Mutation p.E46D 0.29 tolerated_low_confidence(0.65) benign(0) TCGA-BR-8591-01 1 19992143 19992143 C T HTR6 5'UTR 0.28 TCGA-BR-8591-01 1 19992556 19992556 G A HTR6 Missense_Mutation p.A104T 0.25 deleterious(0.04) benign(0.234) TCGA-BR-8591-01 1 200522536 200522536 T C KIF14 Missense_Mutation p.S1643G 0.25 tolerated(0.45) benign(0.003) TCGA-BR-8591-01 1 200574463 200574463 T A KIF14 Missense_Mutation p.D565V 0.20 deleterious(0) probably_damaging(0.993) TCGA-BR-8591-01 1 200880605 200880605 T C C1orf106 Silent p.P328P 0.26 TCGA-BR-8591-01 1 200882867 200882867 T C C1orf106 3'Flank 0.25 TCGA-BR-8591-01 1 201380608 201380608 C T TNNI1 Silent p.P111P 0.27 TCGA-BR-8591-01 1 202249955 202249955 G A LGR6 Missense_Mutation p.E231K 0.29 tolerated(0.08) possibly_damaging(0.853) TCGA-BR-8591-01 1 20234193 20234193 A G OTUD3 Missense_Mutation p.N384S 0.21 tolerated(0.54) benign(0.001) TCGA-BR-8591-01 1 203097967 203097967 G A ADORA1 5'UTR 0.05 TCGA-BR-8591-01 1 204588977 204588977 G A LRRN2 Silent p.R48R 0.42 TCGA-BR-8591-01 1 206758730 206758730 C T RASSF5 Intron 0.23 TCGA-BR-8591-01 1 207252489 207252489 C T PFKFB2 3'Flank 0.31 TCGA-BR-8591-01 1 207649616 207649616 C T CR2 Silent p.N918N 0.36 TCGA-BR-8591-01 1 208390884 208390884 G T PLXNA2 Silent p.A128A 0.21 TCGA-BR-8591-01 1 211256135 211256135 G T KCNH1 Missense_Mutation p.S182Y 0.26 tolerated(0.06) probably_damaging(0.98) TCGA-BR-8591-01 1 211452638 211452638 A - RCOR3 Frame_Shift_Del p.E236Kfs*46 0.21 TCGA-BR-8591-01 1 21226332 21226332 T - EIF4G3 Frame_Shift_Del p.V570* 0.22 TCGA-BR-8591-01 1 212506874 212506874 T C PPP2R5A Silent p.S138S 0.33 TCGA-BR-8591-01 1 214170404 214170404 A G PROX1 Missense_Mutation p.M176V 0.20 deleterious(0) probably_damaging(0.994) TCGA-BR-8591-01 1 214170994 214170994 G T PROX1 Silent p.S372S 0.30 TCGA-BR-8591-01 1 214638166 214638166 G A PTPN14 5'UTR 0.30 TCGA-BR-8591-01 1 215256673 215256673 A - KCNK2 5'UTR 0.26 TCGA-BR-8591-01 1 21599373 21599373 A G ECE1 Silent p.C104C 0.20 TCGA-BR-8591-01 1 216062234 216062234 G C USH2A Missense_Mutation p.T2586R 0.21 benign(0.304) TCGA-BR-8591-01 1 217793649 217793649 C T GPATCH2 Silent p.E83E 0.29 TCGA-BR-8591-01 1 219352518 219352518 A G LYPLAL1 Missense_Mutation p.I41V 0.19 tolerated(0.47) benign(0.04) TCGA-BR-8591-01 1 220101753 220101753 C T SLC30A10 Silent p.R10R 0.24 TCGA-BR-8591-01 1 22199214 22199214 G - HSPG2 Frame_Shift_Del p.H1310Tfs*5 0.21 TCGA-BR-8591-01 1 222803217 222803217 G A MIA3 Silent p.K885K 0.21 TCGA-BR-8591-01 1 222889064 222889064 A G BROX Missense_Mutation p.N8S 0.25 deleterious(0.05) possibly_damaging(0.86) TCGA-BR-8591-01 1 223177683 223177683 G A DISP1 Missense_Mutation p.D982N 0.07 tolerated(0.19) benign(0.035) TCGA-BR-8591-01 1 223284384 223284384 G A TLR5 Missense_Mutation p.R664W 0.32 deleterious(0) probably_damaging(1) TCGA-BR-8591-01 1 223286173 223286173 G T TLR5 Silent p.P67P 0.17 TCGA-BR-8591-01 1 224491429 224491429 G A NVL Missense_Mutation p.A319V 0.09 deleterious(0.01) probably_damaging(0.982) TCGA-BR-8591-01 1 226044664 226044664 G A TMEM63A Silent p.A477A 0.23 TCGA-BR-8591-01 1 226109261 226109261 C A RP4-559A3.7 Missense_Mutation p.Q134H 0.26 deleterious_low_confidence(0.03) probably_damaging(0.974) TCGA-BR-8591-01 1 226595683 226595683 C T PARP1 5'UTR 0.22 TCGA-BR-8591-01 1 226923840 226923840 G A ITPKB Silent p.S440S 0.21 TCGA-BR-8591-01 1 227153002 227153002 G A ADCK3 Missense_Mutation p.R160Q 0.16 tolerated(0.44) benign(0.002) TCGA-BR-8591-01 1 227920569 227920569 G A SNAP47 5'Flank 0.23 TCGA-BR-8591-01 1 227921541 227921541 C T SNAP47 5'Flank 0.29 TCGA-BR-8591-01 1 229730519 229730520 AC - TAF5L Frame_Shift_Del p.V432Qfs*5 0.19 TCGA-BR-8591-01 1 230492738 230492738 G A PGBD5 Missense_Mutation p.R152C 0.26 deleterious(0) probably_damaging(0.98) TCGA-BR-8591-01 1 23191443 23191443 C T EPHB2 Silent p.P347P 0.14 TCGA-BR-8591-01 1 23235636 23235636 G A EPHB2 Missense_Mutation p.R826Q 0.26 deleterious(0) possibly_damaging(0.581) TCGA-BR-8591-01 1 232581284 232581284 T C SIPA1L2 Missense_Mutation p.D1115G 0.32 tolerated(0.19) probably_damaging(0.999) TCGA-BR-8591-01 1 232941435 232941435 C T MAP10 Silent p.A222A 0.21 TCGA-BR-8591-01 1 23398631 23398631 A G KDM1A Silent p.L521L 0.29 TCGA-BR-8591-01 1 234606951 234606951 G A TARBP1 Missense_Mutation p.A361V 0.22 deleterious(0.01) probably_damaging(0.974) TCGA-BR-8591-01 1 235628879 235628879 T - B3GALNT2 Intron 0.17 TCGA-BR-8591-01 1 237167652 237167652 G A MT1HL1 Silent p.C7C 0.32 TCGA-BR-8591-01 1 23762466 23762466 G A ASAP3 Missense_Mutation p.R543W 0.26 deleterious(0) possibly_damaging(0.831) TCGA-BR-8591-01 1 240656266 240656266 C A GREM2 3'UTR 0.29 TCGA-BR-8591-01 1 2415891 2415891 C T PLCH2 Missense_Mutation p.A190V 0.18 deleterious(0.01) probably_damaging(0.944) TCGA-BR-8591-01 1 2426323 2426323 G T PLCH2 Missense_Mutation p.G536V 0.25 tolerated(0.08) benign(0.073) TCGA-BR-8591-01 1 243437869 243437869 A G SDCCAG8 Missense_Mutation p.N111D 0.36 tolerated(0.56) benign(0.003) TCGA-BR-8591-01 1 244538703 244538703 T C C1orf100 Missense_Mutation p.V29A 0.21 tolerated(0.06) benign(0.328) TCGA-BR-8591-01 1 246729200 246729200 C T TFB2M Missense_Mutation p.A81T 0.26 deleterious(0) probably_damaging(0.996) TCGA-BR-8591-01 1 247014591 247014591 T C AHCTF1 Missense_Mutation p.T1582A 0.28 tolerated(0.14) benign(0.01) TCGA-BR-8591-01 1 247320277 247320277 C T ZNF124 Missense_Mutation p.R154H 0.25 tolerated(0.09) benign(0.005) TCGA-BR-8591-01 1 247492780 247492781 - C ZNF496 Frame_Shift_Ins p.E34Gfs*41 0.19 TCGA-BR-8591-01 1 27107166 27107166 G - ARID1A Frame_Shift_Del p.D2260Tfs*7 0.11 TCGA-BR-8591-01 1 27624461 27624461 G A WDTC1 Missense_Mutation p.R363H 0.21 tolerated(0.16) benign(0.002) TCGA-BR-8591-01 1 27685239 27685239 G - MAP3K6 Frame_Shift_Del p.F849Sfs*143 0.28 TCGA-BR-8591-01 1 28476598 28476598 C T PTAFR Missense_Mutation p.R312H 0.23 deleterious(0.02) possibly_damaging(0.891) TCGA-BR-8591-01 1 28541456 28541456 G A DNAJC8 Missense_Mutation p.R78W 0.17 deleterious(0) probably_damaging(0.949) TCGA-BR-8591-01 1 32207532 32207532 C T BAI2 Missense_Mutation p.S485N 0.23 deleterious(0.01) probably_damaging(0.987) TCGA-BR-8591-01 1 33413904 33413904 C T RNF19B Missense_Mutation p.C302Y 0.27 deleterious(0) probably_damaging(0.998) TCGA-BR-8591-01 1 35227066 35227066 G A GJB4 Missense_Mutation p.V71M 0.21 deleterious(0.03) possibly_damaging(0.893) TCGA-BR-8591-01 1 35227334 35227334 G T GJB4 Missense_Mutation p.R160L 0.24 tolerated(0.05) benign(0.047) TCGA-BR-8591-01 1 35321116 35321116 G C SMIM12 3'UTR 0.27 TCGA-BR-8591-01 1 35825031 35825031 T - ZMYM4 Frame_Shift_Del p.F199Lfs*71 0.26 TCGA-BR-8591-01 1 35870723 35870723 G A ZMYM4 Missense_Mutation p.G1210R 0.08 deleterious(0) probably_damaging(0.999) TCGA-BR-8591-01 1 36291026 36291026 A G AGO4 Missense_Mutation p.H140R 0.11 tolerated(1) benign(0) TCGA-BR-8591-01 1 37948726 37948726 G T ZC3H12A Silent p.S438S 0.25 TCGA-BR-8591-01 1 3809521 3809521 G A C1orf174 Nonsense_Mutation p.R19* 0.18 TCGA-BR-8591-01 1 38095330 38095330 G A RSPO1 Missense_Mutation p.R2W 0.39 deleterious(0) possibly_damaging(0.794) TCGA-BR-8591-01 1 38197190 38197190 A G EPHA10 Missense_Mutation p.L519P 0.30 deleterious(0) probably_damaging(0.917) TCGA-BR-8591-01 1 39775307 39775307 T G MACF1 Missense_Mutation p.L957R 0.28 possibly_damaging(0.901) TCGA-BR-8591-01 1 39818828 39818828 C A MACF1 Silent p.A1721A 0.25 TCGA-BR-8591-01 1 40312897 40312897 A - TRIT1 Frame_Shift_Del p.L334* 0.18 TCGA-BR-8591-01 1 40701518 40701518 C T RLF Missense_Mutation p.L382F 0.18 deleterious(0.02) possibly_damaging(0.793) TCGA-BR-8591-01 1 40758422 40758422 T - ZMPSTE24 3'UTR 0.29 TCGA-BR-8591-01 1 40981196 40981196 T C EXO5 Missense_Mutation p.M327T 0.28 tolerated(0.35) benign(0.003) TCGA-BR-8591-01 1 41236429 41236429 G A NFYC Missense_Mutation p.A332T 0.28 tolerated_low_confidence(0.78) benign(0.007) TCGA-BR-8591-01 1 41945042 41945042 C T EDN2 3'UTR 0.20 TCGA-BR-8591-01 1 42880422 42880422 C T RIMKLA Missense_Mutation p.S318L 0.28 deleterious_low_confidence(0.02) benign(0.382) TCGA-BR-8591-01 1 42922972 42922972 T C PPCS Missense_Mutation p.V188A 0.27 tolerated(0.95) benign(0.004) TCGA-BR-8591-01 1 43393339 43393339 G A SLC2A1 Silent p.A405A 0.32 TCGA-BR-8591-01 1 44685707 44685707 C T DMAP1 Missense_Mutation p.T357M 0.20 deleterious(0.01) probably_damaging(0.994) TCGA-BR-8591-01 1 45251767 45251767 G A BEST4 Silent p.I205I 0.25 TCGA-BR-8591-01 1 45798819 45798819 G T MUTYH Missense_Mutation p.Q135K 0.24 deleterious(0) probably_damaging(0.999) TCGA-BR-8591-01 1 46521525 46521525 T - PIK3R3 Frame_Shift_Del p.M295* 0.26 TCGA-BR-8591-01 1 46669262 46669263 - G LURAP1 Frame_Shift_Ins p.D57Gfs*29 0.27 TCGA-BR-8591-01 1 51938555 51938555 C T EPS15 Silent p.G47G 0.23 TCGA-BR-8591-01 1 52238325 52238325 C A OSBPL9 Missense_Mutation p.S377Y 0.27 deleterious(0) probably_damaging(0.961) TCGA-BR-8591-01 1 52847336 52847336 G A ORC1 Missense_Mutation p.A704V 0.22 deleterious(0.02) probably_damaging(0.985) TCGA-BR-8591-01 1 53543377 53543377 C - PODN Frame_Shift_Del p.P303Rfs*7 0.21 TCGA-BR-8591-01 1 53544147 53544147 G A PODN Missense_Mutation p.R370Q 0.25 tolerated(0.22) benign(0.013) TCGA-BR-8591-01 1 53925145 53925145 C A DMRTB1 Missense_Mutation p.R7S 0.23 deleterious(0) probably_damaging(0.999) TCGA-BR-8591-01 1 54331937 54331937 C T YIPF1 Missense_Mutation p.R256H 0.28 tolerated(0.5) probably_damaging(0.973) TCGA-BR-8591-01 1 60125950 60125950 A G FGGY Silent p.T451T 0.15 TCGA-BR-8591-01 1 61818150 61818150 T - NFIA Frame_Shift_Del p.S290Lfs*13 0.22 TCGA-BR-8591-01 1 6257785 6257785 T - RPL22 Frame_Shift_Del p.K15Rfs*5 0.46 TCGA-BR-8591-01 1 6272055 6272055 C T RNF207 Missense_Mutation p.A413V 0.27 deleterious(0.03) benign(0.004) TCGA-BR-8591-01 1 62732402 62732402 A G KANK4 Splice_Site p.X773_splice 0.22 TCGA-BR-8591-01 1 68173379 68173379 T C GNG12 5'UTR 0.38 TCGA-BR-8591-01 1 70654896 70654896 G A LRRC40 Missense_Mutation p.S71L 0.24 tolerated(0.08) benign(0.052) TCGA-BR-8591-01 1 71536538 71536538 A G ZRANB2 Missense_Mutation p.S219P 0.13 deleterious(0.01) unknown(0) TCGA-BR-8591-01 1 76397950 76397950 A G ASB17 Silent p.G9G 0.33 TCGA-BR-8591-01 1 77587958 77587958 A C PIGK Splice_Site p.X357_splice 0.27 TCGA-BR-8591-01 1 77987583 77987583 C T AK5 Silent p.D461D 0.23 TCGA-BR-8591-01 1 8421496 8421496 G A RERE Missense_Mutation p.R691C 0.29 probably_damaging(0.998) TCGA-BR-8591-01 1 84644897 84644898 - A PRKACB Frame_Shift_Ins p.W78Mfs*8 0.17 TCGA-BR-8591-01 1 87599323 87599323 C T RP5-1052I5.2 Missense_Mutation p.R265W 0.44 deleterious_low_confidence(0) unknown(0) TCGA-BR-8591-01 1 899383 899383 C T KLHL17 Missense_Mutation p.T480M 0.35 tolerated(0.12) benign(0.118) TCGA-BR-8591-01 1 9027746 9027746 C T CA6 Silent p.D200D 0.24 TCGA-BR-8591-01 1 907764 907764 C G PLEKHN1 Missense_Mutation p.A321G 0.22 tolerated(0.43) benign(0.013) TCGA-BR-8591-01 1 91382293 91382293 A - ZNF644 3'UTR 0.48 TCGA-BR-8591-01 1 94012462 94012462 T C FNBP1L Silent p.S446S 0.12 TCGA-BR-8591-01 20 10620514 10620514 G A JAG1 Missense_Mutation p.R1097W 0.17 deleterious(0) probably_damaging(0.999) TCGA-BR-8591-01 20 13074181 13074181 G A SPTLC3 Silent p.G261G 0.12 TCGA-BR-8591-01 20 13279946 13279946 C T ISM1 Missense_Mutation p.A412V 0.35 deleterious(0) probably_damaging(0.955) TCGA-BR-8591-01 20 13752052 13752052 G A ESF1 Missense_Mutation p.P443L 0.26 tolerated(0.15) benign(0.03) TCGA-BR-8591-01 20 16493497 16493497 A G KIF16B Silent p.D140D 0.13 TCGA-BR-8591-01 20 17479498 17479498 C T BFSP1 Missense_Mutation p.R308Q 0.26 deleterious(0.05) probably_damaging(0.943) TCGA-BR-8591-01 20 25434176 25434176 C T NINL Missense_Mutation p.A1354T 0.06 tolerated(0.1) benign(0.261) TCGA-BR-8591-01 20 2639179 2639179 G A IDH3B 3'UTR 0.30 TCGA-BR-8591-01 20 30784819 30784819 G A PLAGL2 Silent p.G309G 0.24 TCGA-BR-8591-01 20 33876762 33876762 C A FAM83C Splice_Site p.X172_splice 0.25 TCGA-BR-8591-01 20 34022054 34022054 G A GDF5 Missense_Mutation p.R387C 0.29 deleterious(0) probably_damaging(0.944) TCGA-BR-8591-01 20 34078523 34078524 - A CEP250 Frame_Shift_Ins p.M885Nfs*106 0.29 TCGA-BR-8591-01 20 34091729 34091729 G T CEP250 Missense_Mutation p.Q1844H 0.13 probably_damaging(0.93) TCGA-BR-8591-01 20 34218375 34218375 T C CPNE1 Missense_Mutation p.N368S 0.06 tolerated(0.05) benign(0.099) TCGA-BR-8591-01 20 35064647 35064647 G A DLGAP4 Missense_Mutation p.D379N 0.25 tolerated(0.18) benign(0.009) TCGA-BR-8591-01 20 36560064 36560064 T C VSTM2L Missense_Mutation p.M50T 0.26 deleterious(0.03) benign(0.122) TCGA-BR-8591-01 20 36631163 36631163 G A TTI1 Missense_Mutation p.P840L 0.26 deleterious(0.03) benign(0.018) TCGA-BR-8591-01 20 37356449 37356449 G A SLC32A1 Missense_Mutation p.A249T 0.27 tolerated(0.24) benign(0.099) TCGA-BR-8591-01 20 3891416 3891416 T G PANK2 Missense_Mutation p.S392A 0.20 deleterious(0.01) probably_damaging(0.976) TCGA-BR-8591-01 20 39794342 39794342 C T PLCG1 Missense_Mutation p.R559C 0.17 deleterious(0) probably_damaging(0.99) TCGA-BR-8591-01 20 40113207 40113207 C A CHD6 Missense_Mutation p.R681L 0.22 deleterious(0.01) probably_damaging(1) TCGA-BR-8591-01 20 42162977 42162977 G A L3MBTL1 Silent p.R529R 0.07 TCGA-BR-8591-01 20 44683557 44683557 T C SLC12A5 Silent p.H917H 0.30 TCGA-BR-8591-01 20 44985238 44985238 T A SLC35C2 Missense_Mutation p.S104C 0.30 deleterious(0) probably_damaging(0.971) TCGA-BR-8591-01 20 45771717 45771717 G A EYA2 Missense_Mutation p.R303H 0.17 deleterious(0.03) possibly_damaging(0.84) TCGA-BR-8591-01 20 4913236 4913236 G A SLC23A2 5'UTR 0.38 TCGA-BR-8591-01 20 49576097 49576097 G A MOCS3 Missense_Mutation p.A240T 0.25 deleterious(0.01) benign(0.228) TCGA-BR-8591-01 20 50159027 50159027 G - NFATC2 Frame_Shift_Del p.E5Sfs*35 0.43 TCGA-BR-8591-01 20 50221453 50221453 C T ATP9A Silent p.A970A 0.21 TCGA-BR-8591-01 20 50235213 50235213 T C ATP9A Missense_Mutation p.T780A 0.28 deleterious(0.02) benign(0.329) TCGA-BR-8591-01 20 50273655 50273655 G A ATP9A Missense_Mutation p.T443M 0.07 tolerated(0.13) benign(0.425) TCGA-BR-8591-01 20 50346470 50346470 C T ATP9A Missense_Mutation p.R39H 0.24 deleterious(0) probably_damaging(0.993) TCGA-BR-8591-01 20 50701513 50701513 C T ZFP64 Silent p.A507A 0.23 TCGA-BR-8591-01 20 52788146 52788146 T C CYP24A1 Silent p.E171E 0.26 TCGA-BR-8591-01 20 55027023 55027023 C T CASS4 Missense_Mutation p.A264V 0.22 tolerated(1) benign(0.001) TCGA-BR-8591-01 20 55033681 55033681 G A CASS4 Missense_Mutation p.V747I 0.23 deleterious(0) benign(0.104) TCGA-BR-8591-01 20 57042216 57042216 C T APCDD1L Silent p.A229A 0.33 TCGA-BR-8591-01 20 57766274 57766274 C A ZNF831 Missense_Mutation p.P67H 0.30 deleterious(0) probably_damaging(0.999) TCGA-BR-8591-01 20 57766659 57766659 G A ZNF831 Silent p.T195T 0.25 TCGA-BR-8591-01 20 60912692 60912692 C T LAMA5 Silent p.R706R 0.24 TCGA-BR-8591-01 20 61296587 61296587 G A SLCO4A1 Intron 0.26 TCGA-BR-8591-01 20 61444596 61444596 C T OGFR Silent p.G543G 0.20 TCGA-BR-8591-01 20 61943272 61943272 C A COL20A1 Silent p.T556T 0.39 TCGA-BR-8591-01 20 62654186 62654187 GT - PRPF6 Frame_Shift_Del p.W577Afs*65 0.23 TCGA-BR-8591-01 20 8782728 8782728 C T PLCB1 Intron 0.29 TCGA-BR-8591-01 20 9561247 9561247 C - PAK7 Frame_Shift_Del p.E179Rfs*7 0.23 TCGA-BR-8591-01 21 11098712 11098712 C T BAGE2 RNA 0.12 TCGA-BR-8591-01 21 15884777 15884777 G T SAMSN1 Missense_Mutation p.Q201K 0.28 tolerated(0.25) benign(0.068) TCGA-BR-8591-01 21 16339835 16339835 T C NRIP1 Missense_Mutation p.T227A 0.27 tolerated(0.56) benign(0.003) TCGA-BR-8591-01 21 28338429 28338429 G A ADAMTS5 Silent p.G94G 0.25 TCGA-BR-8591-01 21 30316753 30316753 A - LTN1 Frame_Shift_Del p.S1358Pfs*13 0.17 TCGA-BR-8591-01 21 32253467 32253467 C A KRTAP11-1 Missense_Mutation p.G126V 0.07 tolerated(0.5) benign(0.446) TCGA-BR-8591-01 21 34619154 34619154 C T IFNAR2 Missense_Mutation p.T118M 0.29 tolerated(0.26) possibly_damaging(0.592) TCGA-BR-8591-01 21 34922085 34922085 C A SON Missense_Mutation p.P183H 0.07 possibly_damaging(0.893) TCGA-BR-8591-01 21 37741865 37741865 A G MORC3 Silent p.E733E 0.12 TCGA-BR-8591-01 21 38538593 38538593 T C TTC3 Silent p.Y1359Y 0.26 TCGA-BR-8591-01 21 39086633 39086633 G A KCNJ6 Missense_Mutation p.P276L 0.21 deleterious(0) probably_damaging(1) TCGA-BR-8591-01 21 41414401 41414401 G A DSCAM Silent p.S1861S 0.24 TCGA-BR-8591-01 21 41710234 41710234 C T DSCAM Missense_Mutation p.R526H 0.27 tolerated(0.08) possibly_damaging(0.458) TCGA-BR-8591-01 21 44474066 44474066 C T CBS Missense_Mutation p.R527Q 0.28 tolerated(0.18) benign(0.002) TCGA-BR-8591-01 21 45994422 45994422 T C KRTAP10-4 Missense_Mutation p.S263P 0.28 tolerated(0.55) unknown(0) TCGA-BR-8591-01 21 46047366 46047366 C - KRTAP10-9 Frame_Shift_Del p.C95Afs*286 0.22 TCGA-BR-8591-01 21 46604951 46604951 G A ADARB1 Missense_Mutation p.G544R 0.23 deleterious(0.03) possibly_damaging(0.621) TCGA-BR-8591-01 21 46687474 46687474 G A POFUT2 Intron 0.23 TCGA-BR-8591-01 21 47635156 47635156 G A LSS Nonsense_Mutation p.Q317* 0.20 TCGA-BR-8591-01 21 47771404 47771404 G A PCNT Missense_Mutation p.R469H 0.28 benign(0.001) TCGA-BR-8591-01 21 47966860 47966860 C T DIP2A Silent p.D809D 0.26 TCGA-BR-8591-01 22 18171852 18171852 A G BCL2L13 Silent p.K110K 0.10 TCGA-BR-8591-01 22 19175559 19175559 C A CLTCL1 Missense_Mutation p.Q1456H 0.24 deleterious(0) probably_damaging(1) TCGA-BR-8591-01 22 19969175 19969175 C T ARVCF Missense_Mutation p.G152D 0.27 deleterious(0) possibly_damaging(0.619) TCGA-BR-8591-01 22 20130522 20130522 C G ZDHHC8 Missense_Mutation p.P457A 0.23 tolerated(0.3) possibly_damaging(0.631) TCGA-BR-8591-01 22 20819312 20819312 G A KLHL22 Silent p.S315S 0.20 TCGA-BR-8591-01 22 21331366 21331366 G A AIFM3 Missense_Mutation p.V422I 0.18 tolerated(0.1) benign(0.05) TCGA-BR-8591-01 22 21984306 21984306 C T YDJC 5'UTR 0.22 TCGA-BR-8591-01 22 23165752 23165752 A G IGLV2-8 Missense_Mutation p.Y108C 0.06 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-BR-8591-01 22 24487673 24487673 A C CABIN1 Missense_Mutation p.Q1221P 0.32 deleterious(0.02) possibly_damaging(0.897) TCGA-BR-8591-01 22 24916395 24916395 G T UPB1 Missense_Mutation p.A278S 0.21 deleterious(0.04) possibly_damaging(0.754) TCGA-BR-8591-01 22 26829539 26829539 C A ASPHD2 5'UTR 0.30 TCGA-BR-8591-01 22 26937268 26937268 C T TPST2 Missense_Mutation p.R110H 0.27 tolerated(0.14) benign(0.363) TCGA-BR-8591-01 22 28196314 28196314 C T MN1 Missense_Mutation p.R73H 0.19 probably_damaging(0.991) TCGA-BR-8591-01 22 30221642 30221642 A C ASCC2 Missense_Mutation p.L70R 0.27 deleterious(0) probably_damaging(0.992) TCGA-BR-8591-01 22 30734814 30734814 C T SF3A1 Silent p.S569S 0.26 TCGA-BR-8591-01 22 31322775 31322776 CT - MORC2 3'UTR 0.20 TCGA-BR-8591-01 22 31741335 31741335 G A PATZ1 Missense_Mutation p.A85V 0.31 deleterious_low_confidence(0.02) probably_damaging(0.91) TCGA-BR-8591-01 22 31884676 31884677 TC - EIF4ENIF1 Frame_Shift_Del p.E10Kfs*7 0.21 TCGA-BR-8591-01 22 33255459 33255459 T C TIMP3 3'UTR 0.46 TCGA-BR-8591-01 22 36684430 36684430 G A MYH9 Silent p.D1600D 0.28 TCGA-BR-8591-01 22 36894297 36894297 C T FOXRED2 Intron 0.14 TCGA-BR-8591-01 22 37395938 37395938 A G TEX33 Missense_Mutation p.S193P 0.25 tolerated(0.1) possibly_damaging(0.504) TCGA-BR-8591-01 22 37482378 37482378 G A TMPRSS6 Silent p.G315G 0.33 TCGA-BR-8591-01 22 37581312 37581312 G A C1QTNF6 Missense_Mutation p.R79C 0.36 tolerated(0.07) benign(0.033) TCGA-BR-8591-01 22 38318086 38318086 G A MICALL1 Missense_Mutation p.R226Q 0.28 tolerated(0.26) benign(0.012) TCGA-BR-8591-01 22 38824079 38824079 C T KCNJ4 Missense_Mutation p.R20H 0.25 deleterious(0.03) probably_damaging(0.993) TCGA-BR-8591-01 22 39382072 39382072 C A APOBEC3B Missense_Mutation p.R144S 0.27 tolerated(0.6) benign(0.306) TCGA-BR-8591-01 22 39418983 39418983 G A APOBEC3D Silent p.P58P 0.27 TCGA-BR-8591-01 22 39826200 39826200 C T TAB1 Silent p.G496G 0.17 TCGA-BR-8591-01 22 41543950 41543950 G A EP300 Silent p.P747P 0.28 TCGA-BR-8591-01 22 42321471 42321471 G A TNFRSF13C Missense_Mutation p.P152L 0.22 deleterious(0) benign(0.382) TCGA-BR-8591-01 22 43570381 43570381 G A TTLL12 Silent p.L355L 0.20 TCGA-BR-8591-01 22 43623412 43623412 C A SCUBE1 Missense_Mutation p.R392M 0.43 tolerated(0.07) benign(0.027) TCGA-BR-8591-01 22 45750990 45750990 T C SMC1B Silent p.L989L 0.27 TCGA-BR-8591-01 22 46931895 46931895 G A CELSR1 Silent p.R391R 0.29 TCGA-BR-8591-01 22 47189608 47189608 G A TBC1D22A Silent p.G110G 0.35 TCGA-BR-8591-01 22 50705416 50705416 C T MAPK11 Missense_Mutation p.R186H 0.17 deleterious(0) possibly_damaging(0.879) TCGA-BR-8591-01 22 50893694 50893694 A G SBF1 Missense_Mutation p.F1505L 0.30 deleterious(0.02) benign(0.005) TCGA-BR-8591-01 22 51117092 51117092 A G SHANK3 Missense_Mutation p.D140G 0.18 probably_damaging(1) TCGA-BR-8591-01 2 100289047 100289047 G A AFF3 Silent p.L391L 0.19 TCGA-BR-8591-01 2 105473462 105473462 C T POU3F3 Silent p.S498S 0.29 TCGA-BR-8591-01 2 108921046 108921046 G A SULT1C2 Missense_Mutation p.R142Q 0.26 deleterious(0) probably_damaging(0.99) TCGA-BR-8591-01 2 109347799 109347799 A G RANBP2 Missense_Mutation p.T92A 0.33 tolerated(0.28) benign(0.027) TCGA-BR-8591-01 2 109411014 109411014 C T CCDC138 Missense_Mutation p.T138M 0.24 tolerated(0.24) benign(0) TCGA-BR-8591-01 2 109421455 109421455 A - CCDC138 Frame_Shift_Del p.K284Nfs*3 0.17 TCGA-BR-8591-01 2 109463340 109463340 A G CCDC138 Silent p.P490P 0.25 TCGA-BR-8591-01 2 110927445 110927445 C T NPHP1 Missense_Mutation p.G154S 0.27 tolerated(0.8) benign(0.001) TCGA-BR-8591-01 2 113315657 113315657 A G POLR1B Silent p.T443T 0.27 TCGA-BR-8591-01 2 11351805 11351805 A G ROCK2 Splice_Site p.X735_splice 0.21 TCGA-BR-8591-01 2 113942980 113942980 T - PSD4 Frame_Shift_Del p.W406Gfs*4 0.20 TCGA-BR-8591-01 2 114256886 114256886 G A FOXD4L1 Missense_Mutation p.R18Q 0.31 tolerated_low_confidence(0.12) benign(0.086) TCGA-BR-8591-01 2 114356335 114356336 - C WASH2P RNA 0.24 TCGA-BR-8591-01 2 120836150 120836150 T - EPB41L5 Frame_Shift_Del p.W268Gfs*4 0.19 TCGA-BR-8591-01 2 120844814 120844814 C T EPB41L5 Nonsense_Mutation p.Q291* 0.28 TCGA-BR-8591-01 2 120932582 120932583 - A EPB41L5 3'UTR 0.21 TCGA-BR-8591-01 2 128477600 128477600 G A WDR33 Missense_Mutation p.R667W 0.15 deleterious_low_confidence(0.02) unknown(0) TCGA-BR-8591-01 2 12863670 12863670 C T TRIB2 Silent p.D185D 0.25 TCGA-BR-8591-01 2 129025780 129025780 C T HS6ST1 Missense_Mutation p.V398M 0.16 tolerated_low_confidence(0.1) benign(0.084) TCGA-BR-8591-01 2 131130866 131130866 G A PTPN18 3'UTR 0.36 TCGA-BR-8591-01 2 132021259 132021260 - G POTEE Frame_Shift_Ins p.M747Hfs*35 0.32 TCGA-BR-8591-01 2 136033260 136033260 A - ZRANB3 Frame_Shift_Del p.F344Lfs*5 0.24 TCGA-BR-8591-01 2 141143557 141143557 T C LRP1B Missense_Mutation p.H3479R 0.27 possibly_damaging(0.537) TCGA-BR-8591-01 2 141641551 141641551 G A LRP1B Missense_Mutation p.A1335V 0.24 benign(0.006) TCGA-BR-8591-01 2 148683686 148683686 A - ACVR2A Frame_Shift_Del p.K437Rfs*5 0.24 TCGA-BR-8591-01 2 149247283 149247283 C T MBD5 Missense_Mutation p.A1128V 0.21 deleterious_low_confidence(0.01) unknown(0) TCGA-BR-8591-01 2 152411514 152411514 C T NEB Silent p.T6453T 0.21 TCGA-BR-8591-01 2 152580788 152580788 C T NEB Missense_Mutation p.A200T 0.26 benign(0.306) TCGA-BR-8591-01 2 160053147 160053147 G A TANC1 Missense_Mutation p.C1003Y 0.21 deleterious(0) probably_damaging(0.996) TCGA-BR-8591-01 2 160676356 160676356 T - LY75-CD302 Frame_Shift_Del p.N1345Mfs*8 0.20 TCGA-BR-8591-01 2 162719484 162719485 - A SLC4A10 Frame_Shift_Ins p.L229Tfs*13 0.28 TCGA-BR-8591-01 2 164466372 164466372 G A FIGN Missense_Mutation p.A657V 0.27 tolerated(0.17) probably_damaging(0.989) TCGA-BR-8591-01 2 169851961 169851961 T C ABCB11 Missense_Mutation p.Q170R 0.16 deleterious(0) probably_damaging(0.952) TCGA-BR-8591-01 2 169938083 169938083 G - DHRS9 5'UTR 0.18 TCGA-BR-8591-01 2 170031820 170031820 G A LRP2 Missense_Mutation p.R3551C 0.27 probably_damaging(1) TCGA-BR-8591-01 2 170042319 170042319 G - LRP2 Frame_Shift_Del p.P3180Qfs*30 0.18 TCGA-BR-8591-01 2 170088299 170088299 G A LRP2 Nonsense_Mutation p.Q1718* 0.29 TCGA-BR-8591-01 2 170356084 170356084 A G BBS5 Missense_Mutation p.Y257C 0.28 deleterious(0) probably_damaging(0.996) TCGA-BR-8591-01 2 177036706 177036706 G A HOXD3 Missense_Mutation p.E335K 0.20 deleterious(0.01) possibly_damaging(0.651) TCGA-BR-8591-01 2 177194090 177194090 A - MTX2 Frame_Shift_Del p.K161Nfs*9 0.23 TCGA-BR-8591-01 2 178482854 178482854 G A TTC30A Silent p.Y192Y 0.15 TCGA-BR-8591-01 2 178483410 178483410 G A TTC30A Missense_Mutation p.A7V 0.36 tolerated(0.46) benign(0.001) TCGA-BR-8591-01 2 179209055 179209055 C T OSBPL6 Missense_Mutation p.R344W 0.30 tolerated(0.17) possibly_damaging(0.533) TCGA-BR-8591-01 2 179403387 179403387 G T TTN Missense_Mutation p.Q33057K 0.11 TCGA-BR-8591-01 2 179421666 179421666 C T TTN Silent p.Q29405Q 0.23 TCGA-BR-8591-01 2 179444798 179444798 T C TTN Missense_Mutation p.T22406A 0.28 TCGA-BR-8591-01 2 179457718 179457718 T A TTN Missense_Mutation p.S19710C 0.21 TCGA-BR-8591-01 2 179466856 179466856 T G TTN Missense_Mutation p.D18381A 0.32 TCGA-BR-8591-01 2 179474470 179474470 G A TTN Missense_Mutation p.A17227V 0.25 TCGA-BR-8591-01 2 179584925 179584925 C T TTN Missense_Mutation p.R7815Q 0.21 TCGA-BR-8591-01 2 179659863 179659863 G - TTN Frame_Shift_Del p.P344Lfs*16 0.14 TCGA-BR-8591-01 2 179989141 179989141 T C SESTD1 Missense_Mutation p.R373G 0.22 deleterious(0) probably_damaging(0.977) TCGA-BR-8591-01 2 180308114 180308114 C T ZNF385B Missense_Mutation p.V427M 0.40 tolerated(0.65) possibly_damaging(0.711) TCGA-BR-8591-01 2 183730895 183730895 G A FRZB Missense_Mutation p.S129L 0.21 tolerated(0.13) benign(0.436) TCGA-BR-8591-01 2 186678471 186678473 AAG - FSIP2 In_Frame_Del p.E6767del 0.31 TCGA-BR-8591-01 2 189917735 189917735 C T COL5A2 Missense_Mutation p.G855R 0.16 unknown(0) TCGA-BR-8591-01 2 201460064 201460064 G A AOX1 Missense_Mutation p.R58Q 0.19 deleterious(0.04) benign(0.055) TCGA-BR-8591-01 2 201485877 201485877 G T AOX1 Missense_Mutation p.G637C 0.31 deleterious(0) probably_damaging(1) TCGA-BR-8591-01 2 202352352 202352352 T - ALS2CR11 Frame_Shift_Del p.I1816Lfs*? 0.28 TCGA-BR-8591-01 2 202900038 202900038 G A FZD7 Missense_Mutation p.R223H 0.32 tolerated(0.32) benign(0.004) TCGA-BR-8591-01 2 203420130 203420130 A - BMPR2 Frame_Shift_Del p.N583Tfs*44 0.21 TCGA-BR-8591-01 2 203684333 203684334 - A ICA1L Intron 0.14 TCGA-BR-8591-01 2 203839141 203839141 A - CARF Frame_Shift_Del p.N474Ifs*10 0.21 TCGA-BR-8591-01 2 204150354 204150354 T - CYP20A1 Frame_Shift_Del p.L292* 0.15 TCGA-BR-8591-01 2 209116262 209116263 - T IDH1 Frame_Shift_Ins p.I5Nfs*13 0.11 TCGA-BR-8591-01 2 210874443 210874443 G A RPE Missense_Mutation p.G62D 0.28 tolerated(0.63) benign(0.073) TCGA-BR-8591-01 2 210887827 210887827 T - KANSL1L Frame_Shift_Del p.K937Rfs*42 0.31 TCGA-BR-8591-01 2 215862460 215862460 C A ABCA12 Missense_Mutation p.V1085L 0.22 deleterious(0) possibly_damaging(0.897) TCGA-BR-8591-01 2 217528750 217528750 C T IGFBP2 Missense_Mutation p.R301W 0.35 deleterious(0) probably_damaging(0.999) TCGA-BR-8591-01 2 219346910 219346911 GA - USP37 Frame_Shift_Del p.S573Afs*2 0.23 TCGA-BR-8591-01 2 219508810 219508810 T C ZNF142 Missense_Mutation p.Q810R 0.14 deleterious(0.05) benign(0.069) TCGA-BR-8591-01 2 219528151 219528151 A G BCS1L 3'UTR 0.33 TCGA-BR-8591-01 2 220150745 220150745 T C DNAJB2 3'UTR 0.32 TCGA-BR-8591-01 2 220330807 220330808 - C SPEG Intron 0.32 TCGA-BR-8591-01 2 220334065 220334065 C T SPEG Missense_Mutation p.R1227C 0.22 probably_damaging(0.998) TCGA-BR-8591-01 2 220349122 220349122 C - SPEG Frame_Shift_Del p.R2315Gfs*38 0.27 TCGA-BR-8591-01 2 220366242 220366242 T C GMPPA Silent p.P61P 0.32 TCGA-BR-8591-01 2 225727389 225727389 C A DOCK10 Missense_Mutation p.W559C 0.17 deleterious(0) probably_damaging(0.999) TCGA-BR-8591-01 2 228882616 228882617 CT - SPHKAP Frame_Shift_Del p.S985Pfs*17 0.20 TCGA-BR-8591-01 2 233323702 233323702 C T ALPI Missense_Mutation p.A478V 0.33 deleterious(0.01) possibly_damaging(0.606) TCGA-BR-8591-01 2 233899563 233899563 G A NEU2 Silent p.P313P 0.22 TCGA-BR-8591-01 2 234601611 234601612 AA - UGT1A6 5'UTR 0.26 TCGA-BR-8591-01 2 236708164 236708164 A G AGAP1 Missense_Mutation p.T319A 0.23 tolerated(0.33) probably_damaging(0.989) TCGA-BR-8591-01 2 238277261 238277261 G A COL6A3 Silent p.P1615P 0.29 TCGA-BR-8591-01 2 239039978 239039978 C A ESPNL Silent p.R875R 0.37 TCGA-BR-8591-01 2 239050088 239050088 C T KLHL30 Silent p.C231C 0.28 TCGA-BR-8591-01 2 242169327 242169327 G - HDLBP Frame_Shift_Del p.P1214Qfs*31 0.18 TCGA-BR-8591-01 2 242741294 242741294 G A GAL3ST2 Missense_Mutation p.R73H 0.23 deleterious(0.01) possibly_damaging(0.696) TCGA-BR-8591-01 2 24509160 24509160 A C ITSN2 Missense_Mutation p.L595R 0.16 deleterious(0.01) unknown(0) TCGA-BR-8591-01 2 24927990 24927990 A G NCOA1 Missense_Mutation p.R329G 0.19 deleterious(0) possibly_damaging(0.753) TCGA-BR-8591-01 2 27598992 27598992 G A SNX17 Missense_Mutation p.C375Y 0.23 deleterious(0) probably_damaging(0.996) TCGA-BR-8591-01 2 27600656 27600656 C T ZNF513 Missense_Mutation p.R461H 0.26 deleterious(0) possibly_damaging(0.812) TCGA-BR-8591-01 2 27898476 27898476 A G SLC4A1AP Missense_Mutation p.T475A 0.31 deleterious(0) probably_damaging(0.968) TCGA-BR-8591-01 2 30748598 30748598 G T LCLAT1 Missense_Mutation p.A86S 0.28 tolerated(0.28) benign(0.049) TCGA-BR-8591-01 2 37287865 37287865 C T HEATR5B Missense_Mutation p.V570I 0.26 tolerated(0.08) benign(0.131) TCGA-BR-8591-01 2 44436571 44436571 A - PPM1B Intron 0.43 TCGA-BR-8591-01 2 44471475 44471475 T - snoU13 5'Flank 0.21 TCGA-BR-8591-01 2 44539759 44539759 G A SLC3A1 Missense_Mutation p.R456H 0.20 deleterious(0) probably_damaging(0.994) TCGA-BR-8591-01 2 45169196 45169197 CT - SIX3 5'UTR 0.25 TCGA-BR-8591-01 2 48026311 48026311 T C MSH6 Missense_Mutation p.Y397H 0.32 tolerated(0.14) benign(0.004) TCGA-BR-8591-01 2 48602513 48602513 A G FOXN2 Silent p.G409G 0.43 TCGA-BR-8591-01 2 54483007 54483007 G A TSPYL6 Silent p.P94P 0.27 TCGA-BR-8591-01 2 5833531 5833531 C T SOX11 Silent p.D226D 0.45 TCGA-BR-8591-01 2 61175320 61175320 C T PUS10 Missense_Mutation p.D437N 0.25 tolerated(0.09) benign(0.359) TCGA-BR-8591-01 2 61571087 61571087 T - USP34 Frame_Shift_Del p.N788Ifs*16 0.14 TCGA-BR-8591-01 2 64113007 64113007 G C UGP2 Missense_Mutation p.R287P 0.23 deleterious(0.02) benign(0.189) TCGA-BR-8591-01 2 65473672 65473672 T C ACTR2 Silent p.G63G 0.33 TCGA-BR-8591-01 2 675525 675525 G A TMEM18 Missense_Mutation p.H55Y 0.26 deleterious(0.02) benign(0.198) TCGA-BR-8591-01 2 67637232 67637232 T - ETAA1 3'UTR 0.31 TCGA-BR-8591-01 2 69201725 69201725 A G GKN1 5'UTR 0.30 TCGA-BR-8591-01 2 70923378 70923378 G A ADD2 Missense_Mutation p.T158M 0.45 deleterious(0) probably_damaging(0.975) TCGA-BR-8591-01 2 71219073 71219073 C T TEX261 Missense_Mutation p.R64H 0.15 tolerated(0.19) benign(0.002) TCGA-BR-8591-01 2 74273650 74273650 C A TET3 Silent p.A67A 0.21 TCGA-BR-8591-01 2 74274036 74274037 TC - TET3 Frame_Shift_Del p.Q199Rfs*27 0.25 TCGA-BR-8591-01 2 74701701 74701702 - A CCDC142 Frame_Shift_Ins p.S735Ffs*8 0.17 TCGA-BR-8591-01 2 74702447 74702447 C T CCDC142 Silent p.L560L 0.17 TCGA-BR-8591-01 2 77745529 77745529 T C LRRTM4 Missense_Mutation p.K489R 0.14 deleterious(0.02) probably_damaging(0.993) TCGA-BR-8591-01 2 80646606 80646606 C T CTNNA2 Silent p.D390D 0.20 TCGA-BR-8591-01 2 85361486 85361486 G A TCF7L1 Silent p.P118P 0.31 TCGA-BR-8591-01 2 85617385 85617385 A G ELMOD3 Missense_Mutation p.K314E 0.28 deleterious(0) possibly_damaging(0.801) TCGA-BR-8591-01 2 86073608 86073608 G A ST3GAL5 Silent p.G247G 0.11 TCGA-BR-8591-01 2 89384707 89384707 G T IGKV3-15 Missense_Mutation p.A104E 0.23 deleterious(0.01) probably_damaging(0.962) TCGA-BR-8591-01 2 89399646 89399646 A C IGKV1-16 Silent p.G19G 0.19 TCGA-BR-8591-01 2 96781615 96781615 C T ADRA2B Missense_Mutation p.D92N 0.21 deleterious(0) probably_damaging(1) TCGA-BR-8591-01 2 97875442 97875442 T G ANKRD36 Missense_Mutation p.L1097W 0.15 tolerated_low_confidence(0.06) possibly_damaging(0.869) TCGA-BR-8591-01 2 99439540 99439540 G A KIAA1211L Missense_Mutation p.A399V 0.28 tolerated(0.09) possibly_damaging(0.695) TCGA-BR-8591-01 2 99778504 99778504 A - LIPT1 Frame_Shift_Del p.N30Mfs*26 0.22 TCGA-BR-8591-01 2 99860495 99860495 A T LYG2 Missense_Mutation p.F163I 0.19 deleterious(0) probably_damaging(0.94) TCGA-BR-8591-01 3 100617729 100617729 C T ABI3BP Missense_Mutation p.R120H 0.23 tolerated(0.07) possibly_damaging(0.522) TCGA-BR-8591-01 3 108380774 108380774 G A DZIP3 Silent p.R750R 0.28 TCGA-BR-8591-01 3 112198429 112198429 C T BTLA Silent p.E92E 0.23 TCGA-BR-8591-01 3 113286534 113286534 C A SIDT1 Silent p.T164T 0.20 TCGA-BR-8591-01 3 114057923 114057923 C T ZBTB20 Missense_Mutation p.V719I 0.18 tolerated_low_confidence(0.1) probably_damaging(0.939) TCGA-BR-8591-01 3 114058003 114058003 G - ZBTB20 Frame_Shift_Del p.P692Lfs*43 0.20 TCGA-BR-8591-01 3 114069414 114069414 C T ZBTB20 Missense_Mutation p.G504D 0.27 tolerated(0.09) probably_damaging(0.992) TCGA-BR-8591-01 3 114070435 114070435 G A ZBTB20 Missense_Mutation p.R164W 0.27 deleterious(0.02) probably_damaging(0.993) TCGA-BR-8591-01 3 119121032 119121032 G A ARHGAP31 Missense_Mutation p.R478H 0.23 tolerated(0.07) benign(0.011) TCGA-BR-8591-01 3 119133295 119133295 C - ARHGAP31 Frame_Shift_Del p.P841Qfs*38 0.09 TCGA-BR-8591-01 3 119887227 119887227 T C GPR156 Missense_Mutation p.N366S 0.23 deleterious(0) probably_damaging(0.997) TCGA-BR-8591-01 3 120320066 120320066 C T NDUFB4 Missense_Mutation p.P97S 0.08 deleterious(0) probably_damaging(0.982) TCGA-BR-8591-01 3 121356016 121356016 G A HCLS1 Missense_Mutation p.T181M 0.29 deleterious(0) unknown(0) TCGA-BR-8591-01 3 123046525 123046525 G A ADCY5 Silent p.N629N 0.29 TCGA-BR-8591-01 3 123049848 123049848 G A ADCY5 Missense_Mutation p.R512C 0.31 deleterious(0) probably_damaging(1) TCGA-BR-8591-01 3 124351480 124351480 G A KALRN Missense_Mutation p.R100Q 0.19 deleterious(0) probably_damaging(0.948) TCGA-BR-8591-01 3 124436192 124436192 A G KALRN Missense_Mutation p.Q1095R 0.20 tolerated(0.24) possibly_damaging(0.783) TCGA-BR-8591-01 3 124731960 124731961 CT - HEG1 Frame_Shift_Del p.E821Vfs*66 0.19 TCGA-BR-8591-01 3 125648342 125648342 C T ALG1L Silent p.S139S 0.28 TCGA-BR-8591-01 3 12610389 12610389 T C MKRN2 Silent p.G14G 0.22 TCGA-BR-8591-01 3 126194497 126194497 T A ZXDC Missense_Mutation p.D71V 0.48 deleterious_low_confidence(0.02) benign(0) TCGA-BR-8591-01 3 126261102 126261102 G A CHST13 Missense_Mutation p.R236H 0.14 tolerated(0.28) probably_damaging(0.999) TCGA-BR-8591-01 3 126724067 126724067 G A PLXNA1 Silent p.A626A 0.21 TCGA-BR-8591-01 3 126735391 126735391 C - PLXNA1 Frame_Shift_Del p.Q1019Rfs*22 0.41 TCGA-BR-8591-01 3 127379415 127379417 GAG - PODXL2 In_Frame_Del p.E188del 0.25 TCGA-BR-8591-01 3 127379825 127379825 C T PODXL2 Silent p.A318A 0.16 TCGA-BR-8591-01 3 127799934 127799934 C T RUVBL1 3'UTR 0.36 TCGA-BR-8591-01 3 129274995 129274995 C T PLXND1 3'UTR 0.35 TCGA-BR-8591-01 3 129284805 129284805 A G PLXND1 Missense_Mutation p.L1416P 0.29 deleterious(0) probably_damaging(1) TCGA-BR-8591-01 3 12977614 12977614 G - IQSEC1 Frame_Shift_Del p.P315Lfs*218 0.25 TCGA-BR-8591-01 3 130284257 130284257 A G COL6A6 Missense_Mutation p.T361A 0.21 tolerated(0.1) benign(0.012) TCGA-BR-8591-01 3 132036365 132036365 T - ACPP Frame_Shift_Del p.F24Sfs*3 0.20 TCGA-BR-8591-01 3 133647128 133647128 G - C3orf36 3'UTR 0.21 TCGA-BR-8591-01 3 133647227 133647227 A G C3orf36 Missense_Mutation p.S141P 0.32 tolerated_low_confidence(0.28) possibly_damaging(0.504) TCGA-BR-8591-01 3 133647277 133647277 C T C3orf36 Missense_Mutation p.R124H 0.13 tolerated_low_confidence(0.64) benign(0) TCGA-BR-8591-01 3 134079020 134079021 - G AMOTL2 Frame_Shift_Ins p.Q604Pfs*10 0.19 TCGA-BR-8591-01 3 13427823 13427823 T C NUP210 Missense_Mutation p.T257A 0.21 tolerated(0.64) benign(0.005) TCGA-BR-8591-01 3 135870724 135870724 C T MSL2 Silent p.P333P 0.25 TCGA-BR-8591-01 3 137964030 137964030 G A ARMC8 Intron 0.19 TCGA-BR-8591-01 3 138739311 138739311 C T PRR23B Missense_Mutation p.A65T 0.20 tolerated(0.24) benign(0.05) TCGA-BR-8591-01 3 140282845 140282845 G A CLSTN2 Missense_Mutation p.C842Y 0.29 deleterious(0.02) benign(0.122) TCGA-BR-8591-01 3 142075828 142075828 A G XRN1 Missense_Mutation p.S1200P 0.22 deleterious(0.04) benign(0.001) TCGA-BR-8591-01 3 142443499 142443499 C T TRPC1 Missense_Mutation p.A33V 0.22 deleterious(0.03) probably_damaging(0.979) TCGA-BR-8591-01 3 14485232 14485232 T C SLC6A6 Silent p.P30P 0.18 TCGA-BR-8591-01 3 14693376 14693376 G T CCDC174 Silent p.T11T 0.28 TCGA-BR-8591-01 3 147113965 147113965 C T ZIC4 Missense_Mutation p.R171H 0.40 deleterious(0.01) probably_damaging(0.976) TCGA-BR-8591-01 3 155485443 155485443 G A C3orf33 Missense_Mutation p.A70V 0.20 tolerated(0.85) benign(0.003) TCGA-BR-8591-01 3 158363985 158363985 T C GFM1 Missense_Mutation p.M89T 0.26 deleterious(0) probably_damaging(0.919) TCGA-BR-8591-01 3 164781250 164781250 A - SI Frame_Shift_Del p.L296* 0.22 TCGA-BR-8591-01 3 165547558 165547560 CAA - BCHE In_Frame_Del p.V421del 0.30 TCGA-BR-8591-01 3 169504526 169504526 G A MYNN 3'UTR 0.20 TCGA-BR-8591-01 3 169579523 169579523 T - LRRC31 Frame_Shift_Del p.K85Rfs*7 0.23 TCGA-BR-8591-01 3 170020907 170020908 TG - PRKCI Frame_Shift_Del p.V596Lfs*75 0.16 TCGA-BR-8591-01 3 174974311 174974311 C T NAALADL2 Missense_Mutation p.L311F 0.32 tolerated(0.15) possibly_damaging(0.807) TCGA-BR-8591-01 3 178916876 178916876 G A PIK3CA Missense_Mutation p.R88Q 0.25 tolerated(0.06) probably_damaging(0.998) TCGA-BR-8591-01 3 178922363 178922363 T C PIK3CA Missense_Mutation p.C378R 0.27 tolerated(0.31) possibly_damaging(0.519) TCGA-BR-8591-01 3 179408081 179408081 T - USP13 Frame_Shift_Del p.L118* 0.29 TCGA-BR-8591-01 3 184026652 184026652 C T PSMD2 Missense_Mutation p.R901W 0.24 deleterious(0) probably_damaging(0.928) TCGA-BR-8591-01 3 184043072 184043072 T C EIF4G1 Missense_Mutation p.Y965H 0.24 deleterious(0) probably_damaging(0.988) TCGA-BR-8591-01 3 185209301 185209301 G A TMEM41A 3'UTR 0.21 TCGA-BR-8591-01 3 186953595 186953596 - C MASP1 Frame_Shift_Ins p.P689Tfs*2 0.22 TCGA-BR-8591-01 3 19491653 19491653 C T KCNH8 Silent p.Y477Y 0.24 TCGA-BR-8591-01 3 195488973 195488973 T C MUC4 Missense_Mutation p.T4833A 0.44 possibly_damaging(0.874) TCGA-BR-8591-01 3 196287913 196287913 C T WDR53 Missense_Mutation p.R145Q 0.34 deleterious(0) probably_damaging(0.997) TCGA-BR-8591-01 3 196386986 196386986 T C NRROS Missense_Mutation p.S158P 0.26 deleterious(0) probably_damaging(0.991) TCGA-BR-8591-01 3 21552445 21552445 T - ZNF385D Frame_Shift_Del p.N116Ifs*6 0.24 TCGA-BR-8591-01 3 32859727 32859727 C T TRIM71 Missense_Mutation p.A52V 0.22 tolerated_low_confidence(0.18) unknown(0) TCGA-BR-8591-01 3 37034280 37034281 CT - EPM2AIP1 Frame_Shift_Del p.R96Sfs*21 0.14 TCGA-BR-8591-01 3 37323751 37323751 A - GOLGA4 Frame_Shift_Del p.K178Nfs*23 0.22 TCGA-BR-8591-01 3 38318443 38318443 G - SLC22A13 Frame_Shift_Del p.G464Afs*7 0.10 TCGA-BR-8591-01 3 38357186 38357186 C A SLC22A14 Missense_Mutation p.L506I 0.25 deleterious(0.01) probably_damaging(0.92) TCGA-BR-8591-01 3 38765017 38765017 C A SCN10A Missense_Mutation p.G1086C 0.33 tolerated(0.27) possibly_damaging(0.46) TCGA-BR-8591-01 3 38768219 38768219 C T SCN10A Missense_Mutation p.A989T 0.16 tolerated(1) benign(0.002) TCGA-BR-8591-01 3 42727236 42727236 C T KLHL40 Silent p.R42R 0.32 TCGA-BR-8591-01 3 42793519 42793519 T C CCDC13 Splice_Site p.X172_splice 0.20 TCGA-BR-8591-01 3 44449212 44449212 G T TCAIM 3'UTR 0.32 TCGA-BR-8591-01 3 44611909 44611909 A - ZKSCAN7 Frame_Shift_Del p.K437Nfs*182 0.21 TCGA-BR-8591-01 3 46008259 46008259 T C FYCO1 Missense_Mutation p.Q856R 0.26 tolerated(0.75) benign(0.002) TCGA-BR-8591-01 3 4718358 4718358 G A ITPR1 Missense_Mutation p.R932Q 0.28 tolerated(0.23) probably_damaging(0.992) TCGA-BR-8591-01 3 47447502 47447502 G A PTPN23 Missense_Mutation p.R171H 0.30 unknown(0) TCGA-BR-8591-01 3 48626315 48626315 C A COL7A1 Missense_Mutation p.G810C 0.29 unknown(0) TCGA-BR-8591-01 3 49050488 49050488 G A WDR6 Silent p.V537V 0.26 TCGA-BR-8591-01 3 49060598 49060598 C T NDUFAF3 Missense_Mutation p.A183V 0.16 deleterious_low_confidence(0.01) benign(0.062) TCGA-BR-8591-01 3 49688111 49688112 - C BSN Frame_Shift_Ins p.L531Pfs*67 0.21 TCGA-BR-8591-01 3 49722906 49722906 G - MST1 Frame_Shift_Del p.P474Qfs*52 0.15 TCGA-BR-8591-01 3 49848752 49848752 G T UBA7 Missense_Mutation p.P359H 0.34 deleterious(0) probably_damaging(1) TCGA-BR-8591-01 3 50103805 50103805 A C RBM6 Missense_Mutation p.E938A 0.22 deleterious(0.01) benign(0.297) TCGA-BR-8591-01 3 50129540 50129540 C T RBM5 Missense_Mutation p.R28C 0.16 tolerated(0.13) possibly_damaging(0.689) TCGA-BR-8591-01 3 50211386 50211386 T C SEMA3F Silent p.I91I 0.26 TCGA-BR-8591-01 3 50220116 50220116 C T SEMA3F Missense_Mutation p.A268V 0.32 tolerated(0.51) possibly_damaging(0.713) TCGA-BR-8591-01 3 50328082 50328082 C T IFRD2 Silent p.S93S 0.22 TCGA-BR-8591-01 3 50418437 50418437 C A CACNA2D2 Missense_Mutation p.R258L 0.32 deleterious(0) probably_damaging(0.972) TCGA-BR-8591-01 3 51696671 51696671 T C RAD54L2 Silent p.S1213S 0.27 TCGA-BR-8591-01 3 52391683 52391683 C A DNAH1 Missense_Mutation p.N1304K 0.18 possibly_damaging(0.853) TCGA-BR-8591-01 3 52610554 52610554 T G PBRM1 Intron 0.19 TCGA-BR-8591-01 3 53126558 53126558 C T RFT1 Missense_Mutation p.V429M 0.38 deleterious(0) possibly_damaging(0.893) TCGA-BR-8591-01 3 53854583 53854583 G A CHDH Silent p.C346C 0.07 TCGA-BR-8591-01 3 57847813 57847813 G T SLMAP Missense_Mutation p.K322N 0.21 deleterious(0.03) possibly_damaging(0.537) TCGA-BR-8591-01 3 58089788 58089788 G - FLNB Frame_Shift_Del p.G531Dfs*42 0.24 TCGA-BR-8591-01 3 58552455 58552455 T C FAM107A Intron 0.28 TCGA-BR-8591-01 3 62357003 62357003 G C FEZF2 Missense_Mutation p.Q337E 0.26 tolerated(0.06) possibly_damaging(0.523) TCGA-BR-8591-01 3 62358211 62358211 G A FEZF2 Silent p.G111G 0.36 TCGA-BR-8591-01 3 64142957 64142957 C T PRICKLE2 Missense_Mutation p.V161I 0.28 tolerated(0.23) benign(0.003) TCGA-BR-8591-01 3 64527284 64527285 - G ADAMTS9 Frame_Shift_Ins p.Q1737Pfs*10 0.18 TCGA-BR-8591-01 3 64532624 64532624 G A ADAMTS9 Missense_Mutation p.S1625L 0.15 deleterious(0.02) probably_damaging(0.992) TCGA-BR-8591-01 3 74315771 74315771 G A CNTN3 Silent p.N949N 0.30 TCGA-BR-8591-01 3 77607297 77607297 A G ROBO2 Silent p.L494L 0.23 TCGA-BR-8591-01 3 77666946 77666946 A G ROBO2 Intron 0.24 TCGA-BR-8591-01 3 85961603 85961603 A T CADM2 Missense_Mutation p.S197C 0.26 deleterious(0.01) possibly_damaging(0.525) TCGA-BR-8591-01 3 88189154 88189154 C T ZNF654 Nonsense_Mutation p.Q232* 0.35 TCGA-BR-8591-01 3 89259454 89259454 A - EPHA3 Frame_Shift_Del p.K201Sfs*6 0.18 TCGA-BR-8591-01 3 8944129 8944129 G A RAD18 Missense_Mutation p.S368L 0.18 tolerated(0.21) benign(0.002) TCGA-BR-8591-01 3 95374367 95374367 T G MTHFD2P1 RNA 0.06 TCGA-BR-8591-01 3 97661233 97661233 A - CRYBG3 Frame_Shift_Del p.N977Mfs*27 0.17 TCGA-BR-8591-01 3 9781016 9781016 T C BRPF1 Silent p.P311P 0.25 TCGA-BR-8591-01 3 98251363 98251363 C T GPR15 Silent p.C162C 0.25 TCGA-BR-8591-01 3 99567357 99567357 T C FILIP1L Missense_Mutation p.I1055V 0.23 tolerated(0.1) possibly_damaging(0.684) TCGA-BR-8591-01 4 1075367 1075368 TT - RNF212 Frame_Shift_Del p.S135Ffs*27 0.19 TCGA-BR-8591-01 4 108871514 108871514 C A CYP2U1 Missense_Mutation p.L524M 0.10 tolerated(0.37) benign(0.383) TCGA-BR-8591-01 4 110635373 110635373 T - PLA2G12A 3'UTR 0.36 TCGA-BR-8591-01 4 113352014 113352014 C T ALPK1 Silent p.F437F 0.24 TCGA-BR-8591-01 4 114275552 114275552 G A ANK2 Silent p.P1926P 0.27 TCGA-BR-8591-01 4 118006555 118006555 C T TRAM1L1 5'UTR 0.26 TCGA-BR-8591-01 4 1207322 1207322 T C CTBP1 Missense_Mutation p.Q322R 0.23 deleterious(0.01) possibly_damaging(0.731) TCGA-BR-8591-01 4 123350870 123350870 C A ADAD1 Silent p.P569P 0.27 TCGA-BR-8591-01 4 125590622 125590622 C T ANKRD50 Silent p.G1270G 0.05 TCGA-BR-8591-01 4 126411264 126411264 C A FAT4 Missense_Mutation p.D4429E 0.22 benign(0.247) TCGA-BR-8591-01 4 128688241 128688241 A G SLC25A31 Missense_Mutation p.K167E 0.24 tolerated(0.06) benign(0.13) TCGA-BR-8591-01 4 1326598 1326598 G A MAEA Missense_Mutation p.R237H 0.24 deleterious(0.05) possibly_damaging(0.879) TCGA-BR-8591-01 4 134073056 134073056 T C PCDH10 Silent p.R587R 0.29 TCGA-BR-8591-01 4 13545772 13545772 T C NKX3-2 Silent p.E89E 0.43 TCGA-BR-8591-01 4 13602317 13602317 T G BOD1L1 Missense_Mutation p.K2069N 0.15 benign(0.025) TCGA-BR-8591-01 4 1388615 1388615 C T CRIPAK Missense_Mutation p.R106C 0.41 tolerated(0.05) possibly_damaging(0.835) TCGA-BR-8591-01 4 139993141 139993141 A G ELF2 Silent p.A123A 0.30 TCGA-BR-8591-01 4 141555219 141555219 G T TBC1D9 Missense_Mutation p.L877I 0.17 tolerated(0.13) benign(0.219) TCGA-BR-8591-01 4 146824094 146824094 G A ZNF827 Missense_Mutation p.S106F 0.23 deleterious(0) probably_damaging(0.997) TCGA-BR-8591-01 4 15067858 15067858 T - CPEB2 Frame_Shift_Del p.C989Vfs*31 0.25 TCGA-BR-8591-01 4 151749739 151749739 C T LRBA Silent p.T1588T 0.26 TCGA-BR-8591-01 4 151814245 151814245 A G LRBA Silent p.P708P 0.20 TCGA-BR-8591-01 4 152024917 152024917 T C RPS3A Intron 0.25 TCGA-BR-8591-01 4 152203538 152203538 G A PRSS48 Missense_Mutation p.G152R 0.20 deleterious(0.02) possibly_damaging(0.575) TCGA-BR-8591-01 4 153864507 153864507 T - FHDC1 Frame_Shift_Del p.W102Gfs*55 0.25 TCGA-BR-8591-01 4 153897805 153897805 G A FHDC1 Missense_Mutation p.R1121K 0.45 tolerated(0.66) benign(0.021) TCGA-BR-8591-01 4 154525352 154525353 AC - KIAA0922 Frame_Shift_Del p.T1064Nfs*5 0.20 TCGA-BR-8591-01 4 155253876 155253876 C T DCHS2 Missense_Mutation p.A663T 0.20 deleterious(0.01) possibly_damaging(0.77) TCGA-BR-8591-01 4 155526202 155526202 T - FGG Frame_Shift_Del p.A383Hfs*23 0.19 TCGA-BR-8591-01 4 156273869 156273869 T - MAP9 Frame_Shift_Del p.K567Rfs*13 0.25 TCGA-BR-8591-01 4 156841067 156841067 C A TDO2 Missense_Mutation p.N382K 0.26 deleterious(0.04) possibly_damaging(0.576) TCGA-BR-8591-01 4 158065087 158065087 G A GLRB Missense_Mutation p.A294T 0.25 deleterious(0.04) probably_damaging(0.952) TCGA-BR-8591-01 4 159165463 159165463 G T TMEM144 Missense_Mutation p.A306S 0.26 tolerated(0.09) possibly_damaging(0.463) TCGA-BR-8591-01 4 162577520 162577520 T C FSTL5 Missense_Mutation p.N285S 0.19 deleterious(0.01) probably_damaging(0.977) TCGA-BR-8591-01 4 16258121 16258121 T - TAPT1-AS1 RNA 0.10 TCGA-BR-8591-01 4 169173785 169173785 T - DDX60 Frame_Shift_Del p.T1194Pfs*8 0.18 TCGA-BR-8591-01 4 170400581 170400581 T C NEK1 Silent p.V704V 0.29 TCGA-BR-8591-01 4 170618379 170618379 T - CLCN3 Frame_Shift_Del p.F354Lfs*4 0.11 TCGA-BR-8591-01 4 174450159 174450159 C - HAND2 Frame_Shift_Del p.P95Rfs*4 0.23 TCGA-BR-8591-01 4 17492351 17492351 G - QDPR Frame_Shift_Del p.P188Rfs*2 0.16 TCGA-BR-8591-01 4 1843251 1843251 C T LETM1 Silent p.P139P 0.24 TCGA-BR-8591-01 4 187509968 187509968 G T FAT1 Silent p.P4515P 0.24 TCGA-BR-8591-01 4 189020263 189020263 G T TRIML2 Missense_Mutation p.Q133K 0.26 deleterious(0.02) benign(0.293) TCGA-BR-8591-01 4 189061099 189061099 C T TRIML1 Silent p.S129S 0.26 TCGA-BR-8591-01 4 1954995 1954995 A G WHSC1 Intron 0.24 TCGA-BR-8591-01 4 1980533 1980533 C T WHSC1 Missense_Mutation p.S1332L 0.35 tolerated(0.22) benign(0.007) TCGA-BR-8591-01 4 26483341 26483341 C A CCKAR Missense_Mutation p.E402D 0.26 tolerated(0.7) benign(0.001) TCGA-BR-8591-01 4 2943337 2943337 G A NOP14 Missense_Mutation p.A724V 0.21 tolerated(0.25) benign(0.024) TCGA-BR-8591-01 4 30724208 30724208 C T PCDH7 Silent p.R388R 0.19 TCGA-BR-8591-01 4 3219644 3219644 C G HTT Missense_Mutation p.P2403A 0.13 probably_damaging(0.999) TCGA-BR-8591-01 4 3449296 3449296 G A HGFAC Missense_Mutation p.G478D 0.27 tolerated(0.23) benign(0.012) TCGA-BR-8591-01 4 39246134 39246134 C T WDR19 Silent p.Y869Y 0.23 TCGA-BR-8591-01 4 39511480 39511480 T C UGDH Missense_Mutation p.I237M 0.27 tolerated(0.3) benign(0.093) TCGA-BR-8591-01 4 39606701 39606701 A G SMIM14 Missense_Mutation p.L22P 0.17 deleterious(0) probably_damaging(0.998) TCGA-BR-8591-01 4 47538508 47538508 A G ATP10D Missense_Mutation p.E357G 0.26 tolerated(0.16) benign(0.012) TCGA-BR-8591-01 4 48038281 48038281 C T NIPAL1 3'UTR 0.38 TCGA-BR-8591-01 4 55140717 55140717 G A PDGFRA Silent p.T526T 0.26 TCGA-BR-8591-01 4 55956190 55956190 A G KDR Missense_Mutation p.V1042A 0.23 deleterious(0) probably_damaging(0.999) TCGA-BR-8591-01 4 56823491 56823491 A G CEP135 Missense_Mutation p.D192G 0.24 deleterious(0) probably_damaging(1) TCGA-BR-8591-01 4 57182056 57182056 G A KIAA1211 Silent p.P796P 0.25 TCGA-BR-8591-01 4 5733332 5733332 A G EVC Missense_Mutation p.S189G 0.26 tolerated(0.36) benign(0.003) TCGA-BR-8591-01 4 57798281 57798281 T C REST Missense_Mutation p.V1086A 0.36 deleterious(0) probably_damaging(0.952) TCGA-BR-8591-01 4 65180474 65180474 A - TECRL Frame_Shift_Del p.L148Wfs*9 0.24 TCGA-BR-8591-01 4 6599929 6599929 A G MAN2B2 Missense_Mutation p.Q418R 0.27 deleterious(0) probably_damaging(0.996) TCGA-BR-8591-01 4 66201823 66201823 T G EPHA5 Missense_Mutation p.E893D 0.28 tolerated(0.19) possibly_damaging(0.88) TCGA-BR-8591-01 4 676598 676598 C T MFSD7 Silent p.Q411Q 0.26 TCGA-BR-8591-01 4 73013327 73013327 A - NPFFR2 Frame_Shift_Del p.R458Efs*10 0.22 TCGA-BR-8591-01 4 7774803 7774803 A G AFAP1 Intron 0.28 TCGA-BR-8591-01 4 83838382 83838382 T - THAP9 Frame_Shift_Del p.F341Lfs*2 0.24 TCGA-BR-8591-01 4 8401375 8401375 C T ACOX3 Missense_Mutation p.A261T 0.18 tolerated(0.24) benign(0.038) TCGA-BR-8591-01 4 85525514 85525514 T C CDS1 Missense_Mutation p.L79S 0.27 deleterious(0) possibly_damaging(0.891) TCGA-BR-8591-01 4 85598426 85598426 T C WDFY3 Silent p.S3461S 0.17 TCGA-BR-8591-01 4 875753 875753 C T GAK Missense_Mutation p.A535T 0.30 deleterious(0) probably_damaging(0.986) TCGA-BR-8591-01 4 884355 884355 G - GAK Frame_Shift_Del p.P349Lfs*71 0.13 TCGA-BR-8591-01 4 89571095 89571095 G A HERC3 Missense_Mutation p.G111R 0.21 tolerated(0.07) probably_damaging(1) TCGA-BR-8591-01 4 89649936 89649936 G A FAM13A Intron 0.38 TCGA-BR-8591-01 4 954870 954870 C T DGKQ Silent p.P898P 0.27 TCGA-BR-8591-01 4 95561601 95561601 G T PDLIM5 Missense_Mutation p.R457I 0.20 deleterious(0) probably_damaging(0.99) TCGA-BR-8591-01 4 995599 995599 G A IDUA Missense_Mutation p.C241Y 0.13 deleterious(0) probably_damaging(0.999) TCGA-BR-8591-01 4 99982548 99982548 T - METAP1 3'UTR 0.16 TCGA-BR-8591-01 4 99993536 99993536 C T ADH5 3'UTR 0.34 TCGA-BR-8591-01 5 10391770 10391770 G A MARCH6 Silent p.E231E 0.21 TCGA-BR-8591-01 5 1085355 1085356 - G SLC12A7 Frame_Shift_Ins p.D304Gfs*50 0.18 TCGA-BR-8591-01 5 111540160 111540160 G A EPB41L4A Missense_Mutation p.R430C 0.29 deleterious(0) possibly_damaging(0.79) TCGA-BR-8591-01 5 1216926 1216926 G A SLC6A19 Missense_Mutation p.G347R 0.29 tolerated(0.12) possibly_damaging(0.509) TCGA-BR-8591-01 5 125903997 125903997 G A ALDH7A1 Silent p.S275S 0.28 TCGA-BR-8591-01 5 127595417 127595417 G A FBN2 Silent p.P2823P 0.27 TCGA-BR-8591-01 5 127714547 127714547 C A FBN2 Missense_Mutation p.G547V 0.29 deleterious(0) probably_damaging(1) TCGA-BR-8591-01 5 130825260 130825260 T C RAPGEF6 Missense_Mutation p.T607A 0.32 deleterious(0.03) probably_damaging(0.999) TCGA-BR-8591-01 5 133541779 133541779 C T PPP2CA Missense_Mutation p.R49Q 0.24 tolerated(0.39) benign(0) TCGA-BR-8591-01 5 133997147 133997147 G A SEC24A Missense_Mutation p.A146T 0.26 tolerated_low_confidence(0.33) benign(0.001) TCGA-BR-8591-01 5 135188361 135188361 G A SLC25A48 Missense_Mutation p.R91H 0.26 tolerated(0.21) benign(0.078) TCGA-BR-8591-01 5 13701408 13701409 - A DNAH5 Frame_Shift_Ins p.L4492Ffs*25 0.20 TCGA-BR-8591-01 5 137507779 137507779 C T BRD8 Missense_Mutation p.R54H 0.20 deleterious(0) probably_damaging(0.999) TCGA-BR-8591-01 5 139217239 139217239 G A PSD2 Silent p.S565S 0.26 TCGA-BR-8591-01 5 139260469 139260469 G A NRG2 Silent p.T321T 0.18 TCGA-BR-8591-01 5 139905605 139905605 C G ANKHD1 Missense_Mutation p.P1506R 0.24 possibly_damaging(0.804) TCGA-BR-8591-01 5 139928980 139928980 G T EIF4EBP3 3'UTR 0.29 TCGA-BR-8591-01 5 140056939 140056939 G A HARS Missense_Mutation p.R266C 0.25 deleterious(0.02) benign(0.008) TCGA-BR-8591-01 5 140167397 140167397 G A PCDHA1 Missense_Mutation p.V508M 0.20 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-BR-8591-01 5 140176708 140176708 C T PCDHA2 Missense_Mutation p.A720V 0.30 tolerated_low_confidence(0.18) benign(0.068) TCGA-BR-8591-01 5 140182372 140182372 G A PCDHA3 Silent p.L530L 0.23 TCGA-BR-8591-01 5 140215088 140215088 G A PCDHA7 Missense_Mutation p.V374M 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.83) TCGA-BR-8591-01 5 140263716 140263716 G A PCDHA13 Silent p.P621P 0.27 TCGA-BR-8591-01 5 140482221 140482221 T C PCDHB3 Missense_Mutation p.V663A 0.19 deleterious_low_confidence(0) possibly_damaging(0.684) TCGA-BR-8591-01 5 140516339 140516339 C T PCDHB5 Silent p.S441S 0.26 TCGA-BR-8591-01 5 140516436 140516436 G A PCDHB5 Missense_Mutation p.A474T 0.27 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-BR-8591-01 5 140530736 140530736 C T PCDHB6 Missense_Mutation p.R300W 0.34 deleterious(0.01) possibly_damaging(0.75) TCGA-BR-8591-01 5 140531711 140531711 G A PCDHB6 Missense_Mutation p.A625T 0.27 tolerated(0.22) benign(0.062) TCGA-BR-8591-01 5 140594674 140594674 A G PCDHB13 Missense_Mutation p.T327A 0.26 deleterious_low_confidence(0.01) benign(0.001) TCGA-BR-8591-01 5 140594675 140594675 C G PCDHB13 Missense_Mutation p.T327S 0.25 tolerated_low_confidence(0.07) benign(0) TCGA-BR-8591-01 5 140615982 140615982 C T PCDHB18 RNA 0.33 TCGA-BR-8591-01 5 140720214 140720214 C T PCDHGA2 Missense_Mutation p.A559V 0.24 tolerated_low_confidence(0.31) benign(0.01) TCGA-BR-8591-01 5 140755320 140755320 A G PCDHGA6 Missense_Mutation p.D557G 0.23 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-BR-8591-01 5 140768971 140768971 C T PCDHGB4 Missense_Mutation p.A507V 0.23 deleterious(0.03) benign(0.305) TCGA-BR-8591-01 5 140802536 140802536 G A PCDHGA11 Missense_Mutation p.R581H 0.05 deleterious_low_confidence(0) possibly_damaging(0.863) TCGA-BR-8591-01 5 140802793 140802793 G A PCDHGA11 Missense_Mutation p.D667N 0.06 tolerated_low_confidence(0.12) benign(0.292) TCGA-BR-8591-01 5 140856568 140856568 C T PCDHGC3 Silent p.F295F 0.23 TCGA-BR-8591-01 5 140866151 140866151 G T PCDHGC4 Missense_Mutation p.G471W 0.25 deleterious(0) probably_damaging(1) TCGA-BR-8591-01 5 143543785 143543785 T - YIPF5 Frame_Shift_Del p.T107Hfs*2 0.15 TCGA-BR-8591-01 5 145720013 145720013 G A POU4F3 3'UTR 0.19 TCGA-BR-8591-01 5 14711209 14711209 A - ANKH 3'UTR 0.34 TCGA-BR-8591-01 5 147494018 147494018 C A SPINK5 Missense_Mutation p.H661N 0.21 deleterious(0) probably_damaging(0.999) TCGA-BR-8591-01 5 149210339 149210341 CTC - PPARGC1B In_Frame_Del p.L161del 0.23 TCGA-BR-8591-01 5 149900963 149900963 G A NDST1 Silent p.A49A 0.25 TCGA-BR-8591-01 5 150310818 150310818 T G ZNF300P1 RNA 0.15 TCGA-BR-8591-01 5 150885514 150885514 C T FAT2 Missense_Mutation p.G4221D 0.27 benign(0.432) TCGA-BR-8591-01 5 154346297 154346297 G A MRPL22 Missense_Mutation p.G154D 0.21 deleterious(0.02) possibly_damaging(0.708) TCGA-BR-8591-01 5 156349159 156349159 G - TIMD4 Frame_Shift_Del p.S322Pfs*15 0.20 TCGA-BR-8591-01 5 15928451 15928451 A G FBXL7 Missense_Mutation p.S194G 0.26 deleterious(0.01) benign(0.066) TCGA-BR-8591-01 5 169693822 169693822 G T LCP2 Silent p.P254P 0.19 TCGA-BR-8591-01 5 170346619 170346619 T C RANBP17 Splice_Site p.X425_splice 0.17 TCGA-BR-8591-01 5 172755362 172755362 G A STC2 5'UTR 0.25 TCGA-BR-8591-01 5 173376544 173376544 C A CPEB4 Missense_Mutation p.P497H 0.17 tolerated(0.71) benign(0.01) TCGA-BR-8591-01 5 176518804 176518804 T C FGFR4 Missense_Mutation p.V241A 0.14 deleterious(0) probably_damaging(0.998) TCGA-BR-8591-01 5 178541286 178541286 A G ADAMTS2 Missense_Mutation p.M1073T 0.10 deleterious(0.02) possibly_damaging(0.71) TCGA-BR-8591-01 5 178559313 178559313 T - ADAMTS2 Splice_Site p.X737_splice 0.27 TCGA-BR-8591-01 5 179290791 179290791 C G TBC1D9B Missense_Mutation p.G1137A 0.25 tolerated(0.19) benign(0.014) TCGA-BR-8591-01 5 180630503 180630503 C G TRIM7 Intron 0.24 TCGA-BR-8591-01 5 21783501 21783501 C T CDH12 Silent p.A453A 0.30 TCGA-BR-8591-01 5 24487827 24487827 C T CDH10 Missense_Mutation p.R771Q 0.26 tolerated(0.06) probably_damaging(0.968) TCGA-BR-8591-01 5 24509853 24509853 A - CDH10 Frame_Shift_Del p.Y360Ifs*3 0.12 TCGA-BR-8591-01 5 31317806 31317806 A - CDH6 Frame_Shift_Del p.N554Mfs*8 0.17 TCGA-BR-8591-01 5 31799307 31799307 C T PDZD2 5'UTR 0.33 TCGA-BR-8591-01 5 33461072 33461072 T C TARS Missense_Mutation p.V472A 0.14 tolerated(0.09) possibly_damaging(0.85) TCGA-BR-8591-01 5 35659271 35659271 C T SPEF2 Nonsense_Mutation p.R377* 0.21 TCGA-BR-8591-01 5 36170454 36170455 - A SKP2 Frame_Shift_Ins p.N229Kfs*8 0.10 TCGA-BR-8591-01 5 43619173 43619173 T - NNT Frame_Shift_Del p.F215Lfs*17 0.19 TCGA-BR-8591-01 5 477515 477515 G A SLC9A3 Silent p.T564T 0.15 TCGA-BR-8591-01 5 52358665 52358666 AC - ITGA2 Frame_Shift_Del p.T504Hfs*15 0.14 TCGA-BR-8591-01 5 52379218 52379218 G A ITGA2 Missense_Mutation p.V1065I 0.31 tolerated(0.67) benign(0.002) TCGA-BR-8591-01 5 54711853 54711853 A G SKIV2L2 Missense_Mutation p.E955G 0.28 deleterious(0.01) probably_damaging(0.929) TCGA-BR-8591-01 5 64865507 64865507 G A PPWD1 Nonsense_Mutation p.W116* 0.22 TCGA-BR-8591-01 5 6600002 6600002 G A NSUN2 3'UTR 0.29 TCGA-BR-8591-01 5 665088 665088 C T TPPP 3'UTR 0.28 TCGA-BR-8591-01 5 68800096 68800096 C T OCLN Missense_Mutation p.P9S 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8591-01 5 70785231 70785231 T C BDP1 Missense_Mutation p.V405A 0.20 tolerated(1) benign(0.046) TCGA-BR-8591-01 5 70805906 70805906 A - BDP1 Frame_Shift_Del p.N997Mfs*9 0.24 TCGA-BR-8591-01 5 70811960 70811960 C G BDP1 Silent p.G1574G 0.33 TCGA-BR-8591-01 5 70944923 70944923 G T MCCC2 Splice_Site p.X406_splice 0.19 TCGA-BR-8591-01 5 73931829 73931829 C T ENC1 Missense_Mutation p.C161Y 0.19 deleterious(0.01) probably_damaging(0.997) TCGA-BR-8591-01 5 76248851 76248851 C A CRHBP 5'UTR 0.26 TCGA-BR-8591-01 5 79375873 79375873 A G THBS4 Missense_Mutation p.Q886R 0.28 tolerated(0.25) possibly_damaging(0.777) TCGA-BR-8591-01 5 82837118 82837118 T C VCAN Missense_Mutation p.S2766P 0.29 tolerated(0.24) benign(0.411) TCGA-BR-8591-01 5 82948392 82948392 T G HAPLN1 Missense_Mutation p.S118R 0.25 tolerated(0.44) benign(0.017) TCGA-BR-8591-01 5 83680285 83680285 G A EDIL3 5'UTR 0.39 TCGA-BR-8591-01 5 843740 843740 C T ZDHHC11 Silent p.V201V 0.14 TCGA-BR-8591-01 5 98128867 98128867 G A RGMB Missense_Mutation p.A283T 0.09 deleterious(0) probably_damaging(0.998) TCGA-BR-8591-01 6 101296505 101296506 AC - ASCC3 Frame_Shift_Del p.V107Wfs*25 0.15 TCGA-BR-8591-01 6 10586566 10586566 G T GCNT2 Intron 0.24 TCGA-BR-8591-01 6 109850222 109850222 T - AK9 Frame_Shift_Del p.R1209Gfs*39 0.17 TCGA-BR-8591-01 6 111696939 111696940 - A REV3L Frame_Shift_Ins p.L873Ffs*3 0.23 TCGA-BR-8591-01 6 112393106 112393106 T - TUBE1 Frame_Shift_Del p.K423Rfs*49 0.22 TCGA-BR-8591-01 6 116988046 116988046 C T ZUFSP Missense_Mutation p.A104T 0.22 tolerated(0.35) benign(0.002) TCGA-BR-8591-01 6 12121648 12121648 T A HIVEP1 Missense_Mutation p.N540K 0.22 tolerated(0.38) benign(0.028) TCGA-BR-8591-01 6 12122471 12122472 - C HIVEP1 Frame_Shift_Ins p.T817Yfs*2 0.22 TCGA-BR-8591-01 6 121563431 121563431 G - TBC1D32 Frame_Shift_Del p.G693Dfs*15 0.11 TCGA-BR-8591-01 6 121629187 121629188 CA - TBC1D32 Nonsense_Mutation p.C208* 0.17 TCGA-BR-8591-01 6 121642917 121642917 C T TBC1D32 Missense_Mutation p.R60K 0.22 tolerated(0.19) possibly_damaging(0.517) TCGA-BR-8591-01 6 125231453 125231453 C A RP11-510H23.1 RNA 0.41 TCGA-BR-8591-01 6 125284072 125284072 C - RP11-510H23.1 RNA 0.25 TCGA-BR-8591-01 6 127608767 127608767 G - RNF146 Frame_Shift_Del p.G338Vfs*4 0.25 TCGA-BR-8591-01 6 127767709 127767709 C T KIAA0408 Silent p.Q585Q 0.24 TCGA-BR-8591-01 6 131921295 131921295 A - MED23 Frame_Shift_Del p.F701Lfs*20 0.28 TCGA-BR-8591-01 6 132695778 132695778 T G MOXD1 Missense_Mutation p.S135R 0.38 tolerated(0.54) benign(0.016) TCGA-BR-8591-01 6 133091349 133091349 T C SLC18B1 3'UTR 0.40 TCGA-BR-8591-01 6 1390484 1390484 C T FOXF2 Missense_Mutation p.P101L 0.39 deleterious(0) probably_damaging(1) TCGA-BR-8591-01 6 142399736 142399736 C T NMBR Missense_Mutation p.A243T 0.22 tolerated(0.54) possibly_damaging(0.757) TCGA-BR-8591-01 6 143091558 143091558 G A HIVEP2 Nonsense_Mutation p.R1440* 0.31 TCGA-BR-8591-01 6 144128231 144128231 C A PHACTR2 Missense_Mutation p.T628K 0.29 tolerated(0.07) probably_damaging(0.998) TCGA-BR-8591-01 6 144144816 144144816 A G PHACTR2 Missense_Mutation p.H643R 0.27 deleterious(0.01) benign(0.109) TCGA-BR-8591-01 6 144416267 144416267 A G SF3B5 3'UTR 0.28 TCGA-BR-8591-01 6 150001447 150001447 G A LATS1 Silent p.V719V 0.10 TCGA-BR-8591-01 6 150067127 150067127 G A NUP43 Silent p.D64D 0.24 TCGA-BR-8591-01 6 152652598 152652598 C T SYNE1 Missense_Mutation p.A4408T 0.18 benign(0.053) TCGA-BR-8591-01 6 15513182 15513182 A G JARID2 Missense_Mutation p.M1058V 0.26 tolerated(0.17) benign(0.013) TCGA-BR-8591-01 6 157511329 157511329 G - ARID1B Frame_Shift_Del p.G1284Efs*2 0.19 TCGA-BR-8591-01 6 160169514 160169514 A - WTAP Intron 0.60 TCGA-BR-8591-01 6 160543354 160543354 G A SLC22A1 Silent p.T129T 0.25 TCGA-BR-8591-01 6 160906850 160906850 T - LPAL2 Intron 0.21 TCGA-BR-8591-01 6 161470396 161470396 A G MAP3K4 Missense_Mutation p.I364M 0.25 tolerated(0.12) benign(0.037) TCGA-BR-8591-01 6 163984517 163984517 C T QKI Missense_Mutation p.P234S 0.27 tolerated(0.09) benign(0.424) TCGA-BR-8591-01 6 163987695 163987695 T - QKI Intron 0.33 TCGA-BR-8591-01 6 168467457 168467457 C T FRMD1 Missense_Mutation p.V147M 0.23 deleterious(0) probably_damaging(0.957) TCGA-BR-8591-01 6 170036601 170036601 C G WDR27 Splice_Site p.X624_splice 0.22 TCGA-BR-8591-01 6 17292179 17292179 C A RBM24 Silent p.A180A 0.31 TCGA-BR-8591-01 6 18222307 18222307 A - KDM1B 3'UTR 0.34 TCGA-BR-8591-01 6 24357601 24357601 G - KAAG1 5'UTR 0.28 TCGA-BR-8591-01 6 24436912 24436912 C T GPLD1 Silent p.L750L 0.25 TCGA-BR-8591-01 6 25726456 25726456 G A HIST1H2AA Silent p.G100G 0.26 TCGA-BR-8591-01 6 26017548 26017548 T - HIST1H1A Frame_Shift_Del p.K138Sfs*38 0.19 TCGA-BR-8591-01 6 26385502 26385502 C T BTN2A2 Silent p.N118N 0.31 TCGA-BR-8591-01 6 26463679 26463679 C A BTN2A1 Missense_Mutation p.S213Y 0.28 deleterious(0.02) benign(0.151) TCGA-BR-8591-01 6 29760290 29760290 C T HLA-V RNA 0.43 TCGA-BR-8591-01 6 30297398 30297398 C T TRIM39 Missense_Mutation p.R102W 0.33 deleterious(0.02) probably_damaging(0.993) TCGA-BR-8591-01 6 30459056 30459056 C T HLA-E Silent p.L251L 0.24 TCGA-BR-8591-01 6 30858775 30858775 A G DDR1 Missense_Mutation p.E148G 0.27 tolerated(0.06) benign(0) TCGA-BR-8591-01 6 31323363 31323363 G - HLA-B Frame_Shift_Del p.P209Qfs*5 0.25 TCGA-BR-8591-01 6 31625431 31625431 G A APOM Missense_Mutation p.V158M 0.27 tolerated(0.19) probably_damaging(0.958) TCGA-BR-8591-01 6 31848498 31848498 C T EHMT2 Missense_Mutation p.R1135H 0.23 tolerated(0.09) possibly_damaging(0.84) TCGA-BR-8591-01 6 31867615 31867615 C - ZBTB12 3'UTR 0.26 TCGA-BR-8591-01 6 31926206 31926206 G - NELFE Frame_Shift_Del p.G7Dfs*2 0.19 TCGA-BR-8591-01 6 31933701 31933701 G T SKIV2L Missense_Mutation p.G705W 0.33 deleterious(0) probably_damaging(1) TCGA-BR-8591-01 6 32024393 32024393 C T TNXB Missense_Mutation p.V2705M 0.23 benign(0.035) TCGA-BR-8591-01 6 32035489 32035489 C T TNXB Missense_Mutation p.G2165S 0.07 probably_damaging(0.997) TCGA-BR-8591-01 6 32364081 32364081 G - BTNL2 Frame_Shift_Del p.K272Rfs*9 0.20 TCGA-BR-8591-01 6 32797230 32797230 C T TAP2 Missense_Mutation p.V627I 0.22 tolerated(0.24) benign(0.217) TCGA-BR-8591-01 6 33152074 33152075 - G COL11A2 Intron 0.22 TCGA-BR-8591-01 6 33264534 33264534 C T RGL2 Missense_Mutation p.R87H 0.19 tolerated(0.6) probably_damaging(0.933) TCGA-BR-8591-01 6 33281536 33281536 C T TAPBP Missense_Mutation p.R48H 0.34 deleterious(0.03) benign(0.038) TCGA-BR-8591-01 6 34953019 34953019 T C ANKS1A Silent p.A391A 0.26 TCGA-BR-8591-01 6 36927008 36927008 G A PI16 Missense_Mutation p.E87K 0.30 deleterious(0.01) probably_damaging(1) TCGA-BR-8591-01 6 38843448 38843448 G A DNAH8 Missense_Mutation p.V2351M 0.27 possibly_damaging(0.614) TCGA-BR-8591-01 6 43191022 43191023 AG - CUL9 Frame_Shift_Del p.D2392Pfs*78 0.39 TCGA-BR-8591-01 6 46874435 46874435 G A GPR116 Missense_Mutation p.A22V 0.23 tolerated(0.22) benign(0.001) TCGA-BR-8591-01 6 46967871 46967871 G A GPR110 3'UTR 0.40 TCGA-BR-8591-01 6 46977604 46977604 A - GPR110 Frame_Shift_Del p.S523Pfs*3 0.24 TCGA-BR-8591-01 6 47221045 47221045 G A TNFRSF21 Missense_Mutation p.R486W 0.20 deleterious(0) probably_damaging(1) TCGA-BR-8591-01 6 54208055 54208055 A C TINAG Missense_Mutation p.E219A 0.33 tolerated(0.41) benign(0.128) TCGA-BR-8591-01 6 56716254 56716255 - T RP11-472M19.2 Intron 0.24 TCGA-BR-8591-01 6 75797397 75797397 G - COL12A1 Frame_Shift_Del p.P3026Lfs*51 0.21 TCGA-BR-8591-01 6 75798830 75798830 C G COL12A1 Missense_Mutation p.G3001A 0.17 probably_damaging(0.998) TCGA-BR-8591-01 6 7727443 7727443 G A BMP6 Silent p.S85S 0.17 TCGA-BR-8591-01 6 83838979 83838980 - T DOPEY1 Frame_Shift_Ins p.S700Ffs*37 0.20 TCGA-BR-8591-01 6 85472390 85472390 C T TBX18 Silent p.A123A 0.20 TCGA-BR-8591-01 6 87970632 87970632 C T ZNF292 Missense_Mutation p.R2429W 0.20 deleterious(0) possibly_damaging(0.556) TCGA-BR-8591-01 6 88318838 88318838 A - ORC3 Frame_Shift_Del p.R204Gfs*16 0.18 TCGA-BR-8591-01 6 88854674 88854674 C A CNR1 Missense_Mutation p.C107F 0.22 tolerated(0.17) probably_damaging(0.997) TCGA-BR-8591-01 6 90024932 90024932 C T GABRR2 5'UTR 0.10 TCGA-BR-8591-01 6 90312801 90312801 C T ANKRD6 Silent p.I91I 0.17 TCGA-BR-8591-01 6 90396626 90396626 T C MDN1 Missense_Mutation p.Q3856R 0.28 benign(0.002) TCGA-BR-8591-01 6 90449993 90449993 A G MDN1 Missense_Mutation p.L1518P 0.22 probably_damaging(0.974) TCGA-BR-8591-01 7 100377177 100377177 G A ZAN Missense_Mutation p.A2142T 0.35 unknown(0) TCGA-BR-8591-01 7 100684572 100684572 C T MUC17 Missense_Mutation p.T3292M 0.24 possibly_damaging(0.811) TCGA-BR-8591-01 7 100732838 100732838 C T TRIM56 Missense_Mutation p.R749W 0.23 deleterious(0) possibly_damaging(0.847) TCGA-BR-8591-01 7 101870783 101870784 - C CUX1 Frame_Shift_Ins p.E1102Rfs*4 0.22 TCGA-BR-8591-01 7 102113580 102113580 G C POLR2J 3'UTR 0.09 TCGA-BR-8591-01 7 102213015 102213015 C T POLR2J3 5'Flank 0.14 TCGA-BR-8591-01 7 103243938 103243938 C A RELN Splice_Site p.X1049_splice 0.19 TCGA-BR-8591-01 7 107566694 107566694 G T LAMB1 Silent p.S1666S 0.20 TCGA-BR-8591-01 7 110763653 110763653 A G LRRN3 Missense_Mutation p.I275M 0.23 deleterious(0) probably_damaging(0.919) TCGA-BR-8591-01 7 111368395 111368395 C A DOCK4 Missense_Mutation p.G1946W 0.11 deleterious_low_confidence(0.01) benign(0.219) TCGA-BR-8591-01 7 111958267 111958267 C T ZNF277 Nonsense_Mutation p.R166* 0.17 TCGA-BR-8591-01 7 116165017 116165017 T - CAV1 5'UTR 0.30 TCGA-BR-8591-01 7 11676525 11676525 C T THSD7A Nonsense_Mutation p.W85* 0.21 TCGA-BR-8591-01 7 120884391 120884391 A G CPED1 Missense_Mutation p.K770R 0.09 tolerated(0.16) benign(0.069) TCGA-BR-8591-01 7 120979305 120979305 G T WNT16 Missense_Mutation p.R335M 0.22 deleterious(0) probably_damaging(0.998) TCGA-BR-8591-01 7 121652619 121652619 A C PTPRZ1 Silent p.S1173S 0.25 TCGA-BR-8591-01 7 123101557 123101557 G A IQUB Missense_Mutation p.R621C 0.15 tolerated(0.09) benign(0.339) TCGA-BR-8591-01 7 12680083 12680083 C - SCIN Frame_Shift_Del p.P509Lfs*27 0.44 TCGA-BR-8591-01 7 127724828 127724828 C - SND1 Frame_Shift_Del p.P723Lfs*2 0.25 TCGA-BR-8591-01 7 128488744 128488744 C T FLNC Silent p.G1570G 0.29 TCGA-BR-8591-01 7 132193357 132193357 C T PLXNA4 Silent p.P32P 0.28 TCGA-BR-8591-01 7 134851448 134851448 C - C7orf49 Frame_Shift_Del p.G130Vfs*19 0.22 TCGA-BR-8591-01 7 135376308 135376308 T C SLC13A4 Missense_Mutation p.K436E 0.21 tolerated(0.41) benign(0.297) TCGA-BR-8591-01 7 136700051 136700051 G A CHRM2 Missense_Mutation p.A147T 0.31 deleterious(0) probably_damaging(0.998) TCGA-BR-8591-01 7 138145955 138145955 G A TRIM24 Intron 0.31 TCGA-BR-8591-01 7 138601643 138601643 G - KIAA1549 Frame_Shift_Del p.P910Qfs*15 0.29 TCGA-BR-8591-01 7 139746769 139746769 A G PARP12 Missense_Mutation p.W301R 0.28 deleterious(0) probably_damaging(0.994) TCGA-BR-8591-01 7 140267037 140267037 A G DENND2A Missense_Mutation p.L543P 0.41 deleterious(0) probably_damaging(0.987) TCGA-BR-8591-01 7 140434475 140434475 C A BRAF Missense_Mutation p.E741D 0.31 tolerated(0.41) benign(0.008) TCGA-BR-8591-01 7 141708379 141708379 C T MGAM Silent p.T67T 0.38 TCGA-BR-8591-01 7 142495177 142495177 A G TRBJ2-7 Missense_Mutation p.T14A 0.29 unknown(0) TCGA-BR-8591-01 7 142561892 142561892 C T EPHB6 Missense_Mutation p.R112W 0.23 deleterious(0) probably_damaging(1) TCGA-BR-8591-01 7 142562206 142562206 G A EPHB6 Silent p.T216T 0.22 TCGA-BR-8591-01 7 142962174 142962174 G A GSTK1 Missense_Mutation p.V125I 0.10 tolerated(1) benign(0.003) TCGA-BR-8591-01 7 143175662 143175662 C A TAS2R41 Missense_Mutation p.L233M 0.20 deleterious(0) probably_damaging(0.994) TCGA-BR-8591-01 7 147092722 147092722 A T CNTNAP2 Missense_Mutation p.N507I 0.27 tolerated(0.13) benign(0.057) TCGA-BR-8591-01 7 150765012 150765012 T A SLC4A2 Missense_Mutation p.W340R 0.25 deleterious(0) probably_damaging(0.999) TCGA-BR-8591-01 7 151093229 151093229 C T WDR86 Missense_Mutation p.R120Q 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8591-01 7 151805283 151805283 C T GALNT11 Silent p.R291R 0.29 TCGA-BR-8591-01 7 151842327 151842328 - GGATTTC KMT2C Frame_Shift_Ins p.L4696Kfs*11 0.07 TCGA-BR-8591-01 7 156802962 156802962 A G MNX1 Missense_Mutation p.L28P 0.21 tolerated_low_confidence(0.1) unknown(0) TCGA-BR-8591-01 7 23235487 23235487 A G NUPL2 Missense_Mutation p.R159G 0.15 deleterious(0) probably_damaging(0.999) TCGA-BR-8591-01 7 27140493 27140493 A - HOXA2 Frame_Shift_Del p.F328Sfs*25 0.22 TCGA-BR-8591-01 7 27204803 27204803 C T HOXA9 Missense_Mutation p.V92M 0.44 tolerated(0.33) benign(0.017) TCGA-BR-8591-01 7 2949685 2949685 T C CARD11 Missense_Mutation p.R1087G 0.57 deleterious(0) possibly_damaging(0.821) TCGA-BR-8591-01 7 37960482 37960482 G A EPDR1 5'UTR 0.32 TCGA-BR-8591-01 7 40900112 40900112 C A SUGCT 3'UTR 0.33 TCGA-BR-8591-01 7 43664511 43664511 C A STK17A 3'UTR 0.28 TCGA-BR-8591-01 7 44146447 44146447 C - AEBP1 Frame_Shift_Del p.S188Afs*104 0.25 TCGA-BR-8591-01 7 44804020 44804020 C T ZMIZ2 Silent p.C621C 0.25 TCGA-BR-8591-01 7 45006354 45006354 G A MYO1G Silent p.V622V 0.22 TCGA-BR-8591-01 7 53103741 53103741 G T POM121L12 Missense_Mutation p.R126L 0.25 tolerated(0.05) possibly_damaging(0.858) TCGA-BR-8591-01 7 53103870 53103870 T C POM121L12 Missense_Mutation p.L169P 0.26 tolerated(0.26) benign(0.045) TCGA-BR-8591-01 7 55914312 55914312 G A SEPT14 Missense_Mutation p.R25C 0.20 deleterious(0.01) benign(0.064) TCGA-BR-8591-01 7 57509967 57509967 C A ZNF716 5'UTR 0.22 TCGA-BR-8591-01 7 62752556 62752556 G A ZNF733P RNA 0.09 TCGA-BR-8591-01 7 6474591 6474591 C - DAGLB Frame_Shift_Del p.M162Wfs*114 0.38 TCGA-BR-8591-01 7 6474614 6474614 T C DAGLB Missense_Mutation p.I153V 0.24 tolerated(0.43) benign(0.004) TCGA-BR-8591-01 7 65557610 65557610 G A ASL Missense_Mutation p.A404T 0.29 tolerated(0.52) benign(0.001) TCGA-BR-8591-01 7 72412827 72412827 C T POM121 Silent p.S500S 0.36 TCGA-BR-8591-01 7 73609778 73609778 A G EIF4H 3'UTR 0.42 TCGA-BR-8591-01 7 75052388 75052388 G T POM121C Missense_Mutation p.L383I 0.24 deleterious(0.03) possibly_damaging(0.741) TCGA-BR-8591-01 7 77236553 77236553 G A PTPN12 Missense_Mutation p.A233T 0.24 deleterious(0) possibly_damaging(0.874) TCGA-BR-8591-01 7 77569913 77569913 T A PHTF2 Silent p.P569P 0.21 TCGA-BR-8591-01 7 77998478 77998480 ATA - MAGI2 In_Frame_Del p.Y366del 0.16 TCGA-BR-8591-01 7 82583831 82583831 T C PCLO Silent p.V2146V 0.11 TCGA-BR-8591-01 7 82784516 82784516 G T PCLO Missense_Mutation p.P481T 0.27 possibly_damaging(0.803) TCGA-BR-8591-01 7 86416293 86416293 C T GRM3 Silent p.N395N 0.22 TCGA-BR-8591-01 7 86493775 86493775 T - GRM3 3'UTR 0.19 TCGA-BR-8591-01 7 87329769 87329769 C T RUNDC3B Missense_Mutation p.R108C 0.15 deleterious(0) probably_damaging(1) TCGA-BR-8591-01 7 96653787 96653787 G A DLX5 Missense_Mutation p.P50L 0.10 deleterious(0.02) benign(0.365) TCGA-BR-8591-01 7 97860431 97860431 C T TECPR1 Splice_Site p.X709_splice 0.15 TCGA-BR-8591-01 7 98531020 98531020 A G TRRAP Missense_Mutation p.T1337A 0.20 benign(0.122) TCGA-BR-8591-01 7 99015149 99015149 C T BUD31 Silent p.C105C 0.33 TCGA-BR-8591-01 8 100050671 100050671 T - VPS13B Frame_Shift_Del p.L58* 0.24 TCGA-BR-8591-01 8 100654346 100654346 A T VPS13B Missense_Mutation p.E1868V 0.21 deleterious(0.02) benign(0.346) TCGA-BR-8591-01 8 103340002 103340002 G T UBR5 Silent p.T483T 0.22 TCGA-BR-8591-01 8 104394855 104394855 T - CTHRC1 3'UTR 0.13 TCGA-BR-8591-01 8 104933920 104933921 - A RIMS2 Frame_Shift_Ins p.M704Nfs*34 0.12 TCGA-BR-8591-01 8 107782296 107782296 G A ABRA Silent p.S41S 0.23 TCGA-BR-8591-01 8 110563098 110563098 A G EBAG9 Silent p.L15L 0.29 TCGA-BR-8591-01 8 110576774 110576774 G A EBAG9 Missense_Mutation p.V210M 0.17 deleterious(0.01) probably_damaging(0.99) TCGA-BR-8591-01 8 11058234 11058234 G - XKR6 Frame_Shift_Del p.M206* 0.15 TCGA-BR-8591-01 8 113267603 113267603 T C CSMD3 Missense_Mutation p.S3306G 0.20 tolerated(0.9) possibly_damaging(0.76) TCGA-BR-8591-01 8 113988083 113988083 G T CSMD3 Missense_Mutation p.A442E 0.14 tolerated(0.27) benign(0.005) TCGA-BR-8591-01 8 11420558 11420558 C T BLK Silent p.D417D 0.12 TCGA-BR-8591-01 8 116426634 116426634 C A TRPS1 Missense_Mutation p.A1168S 0.21 tolerated_low_confidence(1) benign(0.012) TCGA-BR-8591-01 8 11995172 11995172 C A USP17L2 Missense_Mutation p.Q366H 0.14 tolerated(0.17) possibly_damaging(0.767) TCGA-BR-8591-01 8 120844797 120844797 A G TAF2 Missense_Mutation p.L3P 0.24 tolerated_low_confidence(0.52) benign(0) TCGA-BR-8591-01 8 124413003 124413003 C T ATAD2 5'Flank 0.14 TCGA-BR-8591-01 8 125506109 125506109 G A TATDN1 Silent p.H252H 0.15 TCGA-BR-8591-01 8 126091168 126091168 C T KIAA0196 Missense_Mutation p.A175T 0.26 tolerated(0.59) possibly_damaging(0.883) TCGA-BR-8591-01 8 12943849 12943849 G T DLC1 Silent p.P1472P 0.18 TCGA-BR-8591-01 8 12957883 12957883 C A DLC1 Missense_Mutation p.G655C 0.12 deleterious(0.01) possibly_damaging(0.873) TCGA-BR-8591-01 8 132051792 132051792 C T ADCY8 Missense_Mutation p.G263D 0.19 tolerated(0.49) probably_damaging(0.92) TCGA-BR-8591-01 8 134225301 134225301 G A WISP1 Silent p.T88T 0.17 TCGA-BR-8591-01 8 141461251 141461251 G A TRAPPC9 Silent p.H172H 0.21 TCGA-BR-8591-01 8 141561443 141561443 C T AGO2 Silent p.A454A 0.20 TCGA-BR-8591-01 8 143603466 143603466 C T BAI1 Silent p.C1055C 0.22 TCGA-BR-8591-01 8 144126111 144126111 G A C8orf31 Missense_Mutation p.A78T 0.22 tolerated_low_confidence(0.28) unknown(0) TCGA-BR-8591-01 8 144620415 144620415 G - ZC3H3 Frame_Shift_Del p.S375Afs*48 0.19 TCGA-BR-8591-01 8 144811445 144811445 C T FAM83H Missense_Mutation p.E166K 0.23 deleterious(0.01) probably_damaging(0.996) TCGA-BR-8591-01 8 144892734 144892734 T C SCRIB Missense_Mutation p.K482R 0.18 benign(0.027) TCGA-BR-8591-01 8 144944631 144944631 C T EPPK1 Missense_Mutation p.A931T 0.18 benign(0.084) TCGA-BR-8591-01 8 144992277 144992277 G A PLEC Silent p.D4041D 0.24 TCGA-BR-8591-01 8 145065718 145065718 C - GRINA Frame_Shift_Del p.N112Tfs*56 0.33 TCGA-BR-8591-01 8 145112396 145112396 G A OPLAH Silent p.R459R 0.19 TCGA-BR-8591-01 8 145556953 145556953 G A SCRT1 Missense_Mutation p.A314V 0.27 deleterious(0.01) unknown(0) TCGA-BR-8591-01 8 145557181 145557181 G A SCRT1 Missense_Mutation p.A238V 0.39 deleterious(0) unknown(0) TCGA-BR-8591-01 8 145583308 145583308 T C SLC52A2 Silent p.S52S 0.19 TCGA-BR-8591-01 8 146067086 146067086 C T ZNF7 Silent p.C198C 0.16 TCGA-BR-8591-01 8 146156297 146156297 C T ZNF16 Missense_Mutation p.E626K 0.20 deleterious(0.02) probably_damaging(0.932) TCGA-BR-8591-01 8 16012627 16012628 - T MSR1 Frame_Shift_Ins p.G282Rfs*24 0.15 TCGA-BR-8591-01 8 16971623 16971623 A G MICU3 Missense_Mutation p.R427G 0.11 deleterious(0) benign(0.379) TCGA-BR-8591-01 8 1719304 1719304 G T CLN8 Missense_Mutation p.M28I 0.21 tolerated(0.98) benign(0) TCGA-BR-8591-01 8 17406329 17406330 - A SLC7A2 Frame_Shift_Ins p.N267Kfs*12 0.14 TCGA-BR-8591-01 8 17612040 17612040 A G MTUS1 Missense_Mutation p.M426T 0.22 tolerated(0.08) benign(0.001) TCGA-BR-8591-01 8 18079496 18079496 C T NAT1 Intron 0.22 TCGA-BR-8591-01 8 18413785 18413785 G - PSD3 Frame_Shift_Del p.D955Tfs*14 0.19 TCGA-BR-8591-01 8 18432748 18432748 G A PSD3 Silent p.N843N 0.16 TCGA-BR-8591-01 8 1905204 1905204 C T ARHGEF10 Silent p.S1270S 0.09 TCGA-BR-8591-01 8 2046748 2046748 G A MYOM2 Missense_Mutation p.G792D 0.14 deleterious(0) probably_damaging(1) TCGA-BR-8591-01 8 21840178 21840178 C T XPO7 Missense_Mutation p.H378Y 0.20 tolerated(0.27) benign(0.007) TCGA-BR-8591-01 8 21903771 21903771 C A FGF17 Silent p.I73I 0.20 TCGA-BR-8591-01 8 21905606 21905606 G A FGF17 Missense_Mutation p.R166H 0.18 deleterious(0.03) possibly_damaging(0.736) TCGA-BR-8591-01 8 22265945 22265945 C A SLC39A14 Silent p.T131T 0.20 TCGA-BR-8591-01 8 22548215 22548215 C T EGR3 Missense_Mutation p.R312Q 0.18 deleterious(0) probably_damaging(0.974) TCGA-BR-8591-01 8 22864426 22864426 A G RHOBTB2 Missense_Mutation p.N245S 0.21 deleterious(0.04) benign(0.005) TCGA-BR-8591-01 8 22995226 22995226 C T TNFRSF10D 3'UTR 0.24 TCGA-BR-8591-01 8 23155605 23155605 T - LOXL2 Frame_Shift_Del p.K759Sfs*9 0.16 TCGA-BR-8591-01 8 23539062 23539062 C T NKX3-1 Missense_Mutation p.R126H 0.24 deleterious(0) probably_damaging(1) TCGA-BR-8591-01 8 24811209 24811209 A G CTD-2168K21.2 5'Flank 0.25 TCGA-BR-8591-01 8 24813312 24813312 A G CTD-2168K21.2 5'Flank 0.15 TCGA-BR-8591-01 8 25315822 25315837 CCTTTTTCTCCTCCCG - KCTD9 5'UTR 0.16 TCGA-BR-8591-01 8 25323706 25323706 T C CDCA2 Missense_Mutation p.Y135H 0.14 tolerated(0.18) benign(0.338) TCGA-BR-8591-01 8 26227792 26227792 C T PPP2R2A Nonsense_Mutation p.R413* 0.15 TCGA-BR-8591-01 8 27145134 27145134 G A TRIM35 Missense_Mutation p.A472V 0.32 tolerated(0.33) benign(0.09) TCGA-BR-8591-01 8 28575242 28575242 C T EXTL3 Missense_Mutation p.R556C 0.20 deleterious(0.05) benign(0.39) TCGA-BR-8591-01 8 2886956 2886956 G A CSMD1 Silent p.Y2580Y 0.26 TCGA-BR-8591-01 8 33247281 33247281 G A FUT10 Missense_Mutation p.R138W 0.17 deleterious(0) probably_damaging(1) TCGA-BR-8591-01 8 37974227 37974227 T C ASH2L Silent p.T279T 0.11 TCGA-BR-8591-01 8 38369847 38369847 C T C8orf86 3'UTR 0.11 TCGA-BR-8591-01 8 38809830 38809830 G T PLEKHA2 Silent p.V211V 0.18 TCGA-BR-8591-01 8 39644523 39644523 A G ADAM2 Silent p.C287C 0.16 TCGA-BR-8591-01 8 41166419 41166419 A G SFRP1 Missense_Mutation p.M87T 0.24 deleterious(0) possibly_damaging(0.872) TCGA-BR-8591-01 8 41397247 41397247 G - GINS4 Frame_Shift_Del p.E118Sfs*24 0.18 TCGA-BR-8591-01 8 41551449 41551449 T C ANK1 Missense_Mutation p.T1208A 0.17 tolerated(0.33) benign(0.047) TCGA-BR-8591-01 8 42151029 42151029 T C IKBKB Silent p.I129I 0.18 TCGA-BR-8591-01 8 43037356 43037356 G A HGSNAT Missense_Mutation p.V361M 0.18 tolerated(0.09) benign(0.099) TCGA-BR-8591-01 8 49832848 49832848 C T SNAI2 Missense_Mutation p.G78R 0.16 tolerated(0.54) possibly_damaging(0.51) TCGA-BR-8591-01 8 53569839 53569839 T - RB1CC1 Frame_Shift_Del p.V851* 0.20 TCGA-BR-8591-01 8 54900776 54900776 C T TCEA1 Missense_Mutation p.A122T 0.22 tolerated(0.49) benign(0.001) TCGA-BR-8591-01 8 55533979 55533979 C - RP1 Frame_Shift_Del p.P153Hfs*4 0.19 TCGA-BR-8591-01 8 56436612 56436612 A G XKR4 Silent p.S593S 0.24 TCGA-BR-8591-01 8 59494326 59494326 T C SDCBP 3'UTR 0.20 TCGA-BR-8591-01 8 59720271 59720271 G A TOX 3'UTR 0.39 TCGA-BR-8591-01 8 61757811 61757811 T C CHD7 Silent p.L1685L 0.27 TCGA-BR-8591-01 8 65509466 65509466 A - CYP7B1 Frame_Shift_Del p.F418Lfs*2 0.21 TCGA-BR-8591-01 8 67716612 67716612 A - SGK3 Frame_Shift_Del p.K63Nfs*8 0.12 TCGA-BR-8591-01 8 67900734 67900734 T G PPP1R42 Missense_Mutation p.N191H 0.12 deleterious(0.04) benign(0.007) TCGA-BR-8591-01 8 68007920 68007920 T C CSPP1 Silent p.Y301Y 0.21 TCGA-BR-8591-01 8 68255619 68255619 G - ARFGEF1 5'UTR 0.18 TCGA-BR-8591-01 8 69358682 69358682 G A C8orf34 Silent p.P198P 0.12 TCGA-BR-8591-01 8 70515459 70515459 C T SULF1 Missense_Mutation p.A365V 0.19 deleterious(0) probably_damaging(0.999) TCGA-BR-8591-01 8 70744002 70744002 C T SLCO5A1 Missense_Mutation p.A303T 0.15 deleterious(0.01) benign(0.423) TCGA-BR-8591-01 8 72127929 72127929 C A EYA1 Silent p.L465L 0.15 TCGA-BR-8591-01 8 72958792 72958792 T - TRPA1 Frame_Shift_Del p.T673Hfs*23 0.20 TCGA-BR-8591-01 8 75233296 75233296 G A JPH1 Missense_Mutation p.T76M 0.29 deleterious(0) possibly_damaging(0.861) TCGA-BR-8591-01 8 77765070 77765070 A T ZFHX4 Missense_Mutation p.Q1971H 0.25 benign(0) TCGA-BR-8591-01 8 77767659 77767659 A G ZFHX4 Silent p.K2834K 0.23 TCGA-BR-8591-01 8 80523414 80523414 G A STMN2 5'UTR 0.06 TCGA-BR-8591-01 8 8176630 8176630 G A SGK223 Silent p.C1085C 0.19 TCGA-BR-8591-01 8 86049698 86049698 G T LRRCC1 Splice_Site p.X777_splice 0.14 TCGA-BR-8591-01 8 86253877 86253877 A G CA1 5'UTR 0.12 TCGA-BR-8591-01 8 87645015 87645015 A - CNGB3 Frame_Shift_Del p.S429Lfs*9 0.18 TCGA-BR-8591-01 8 8998651 8998651 T G PPP1R3B Missense_Mutation p.S171R 0.19 deleterious(0) possibly_damaging(0.876) TCGA-BR-8591-01 8 90770378 90770378 C T RIPK2 Silent p.G30G 0.15 TCGA-BR-8591-01 8 92365208 92365208 T C SLC26A7 Missense_Mutation p.V433A 0.12 deleterious(0.01) possibly_damaging(0.803) TCGA-BR-8591-01 8 94746566 94746566 C T RBM12B Nonsense_Mutation p.W691* 0.18 TCGA-BR-8591-01 8 9622250 9622250 A G TNKS Missense_Mutation p.R1133G 0.11 deleterious(0) benign(0.309) TCGA-BR-8591-01 8 98290066 98290066 C T TSPYL5 Missense_Mutation p.G3S 0.19 deleterious_low_confidence(0.01) unknown(0) TCGA-BR-8591-01 8 99170031 99170031 C T POP1 Silent p.P869P 0.13 TCGA-BR-8591-01 9 104238131 104238131 T C TMEM246 3'UTR 0.31 TCGA-BR-8591-01 9 106885501 106885501 A - SMC2 Frame_Shift_Del p.T751Pfs*9 0.28 TCGA-BR-8591-01 9 107571802 107571802 C T ABCA1 Missense_Mutation p.A1407T 0.21 tolerated(0.13) benign(0.004) TCGA-BR-8591-01 9 109690810 109690810 G A ZNF462 Silent p.P1539P 0.24 TCGA-BR-8591-01 9 110250473 110250473 C T KLF4 Missense_Mutation p.A68T 0.16 tolerated(0.06) probably_damaging(0.981) TCGA-BR-8591-01 9 111701967 111701967 G T FAM206A 3'UTR 0.26 TCGA-BR-8591-01 9 112705624 112705624 A C PALM2 Missense_Mutation p.E385D 0.09 tolerated(0.33) benign(0.083) TCGA-BR-8591-01 9 113013693 113013693 A G TXN Missense_Mutation p.V25A 0.33 tolerated(0.05) benign(0.241) TCGA-BR-8591-01 9 113141745 113141745 T C SVEP1 Silent p.V3430V 0.24 TCGA-BR-8591-01 9 114293219 114293222 TGTT - ZNF483 Frame_Shift_Del p.C161Pfs*9 0.37 TCGA-BR-8591-01 9 114304767 114304767 A G ZNF483 Missense_Mutation p.T518A 0.24 deleterious(0.01) benign(0.173) TCGA-BR-8591-01 9 114453907 114453907 T C C9orf84 Silent p.Q1386Q 0.30 TCGA-BR-8591-01 9 115805377 115805377 A G ZFP37 Silent p.H507H 0.23 TCGA-BR-8591-01 9 115941002 115941002 T - FKBP15 Frame_Shift_Del p.K665Rfs*9 0.32 TCGA-BR-8591-01 9 121929807 121929807 G A BRINP1 Missense_Mutation p.T614M 0.23 deleterious(0) probably_damaging(0.985) TCGA-BR-8591-01 9 126133621 126133621 G A CRB2 Missense_Mutation p.G734R 0.26 tolerated(0.05) probably_damaging(0.956) TCGA-BR-8591-01 9 126134595 126134595 G A CRB2 Missense_Mutation p.C859Y 0.26 deleterious(0) benign(0.384) TCGA-BR-8591-01 9 127911967 127911967 C T PPP6C Silent p.T338T 0.25 TCGA-BR-8591-01 9 129596068 129596068 C T ZBTB43 Missense_Mutation p.P427L 0.24 deleterious(0) probably_damaging(0.926) TCGA-BR-8591-01 9 130829050 130829050 C T NAIF1 Missense_Mutation p.G111S 0.23 tolerated_low_confidence(0.21) benign(0.012) TCGA-BR-8591-01 9 130868770 130868770 T C SLC25A25 Missense_Mutation p.Y383H 0.28 deleterious(0) probably_damaging(0.997) TCGA-BR-8591-01 9 130941148 130941148 C A CIZ1 Missense_Mutation p.Q446H 0.26 tolerated_low_confidence(0.13) benign(0.332) TCGA-BR-8591-01 9 130984785 130984785 C T DNM1 Silent p.G346G 0.26 TCGA-BR-8591-01 9 131457044 131457044 T C SET 3'UTR 0.21 TCGA-BR-8591-01 9 131885369 131885369 C T PPP2R4 Silent p.N56N 0.22 TCGA-BR-8591-01 9 132400192 132400193 CA - ASB6 Frame_Shift_Del p.V381Gfs*30 0.12 TCGA-BR-8591-01 9 133901811 133901811 C T LAMC3 Silent p.Y171Y 0.24 TCGA-BR-8591-01 9 135553584 135553584 T C GTF3C4 Missense_Mutation p.I193T 0.29 deleterious(0) possibly_damaging(0.575) TCGA-BR-8591-01 9 135739050 135739050 A G AK8 Splice_Site p.X111_splice 0.16 TCGA-BR-8591-01 9 136341418 136341419 - C SLC2A6 Frame_Shift_Ins p.A168Gfs*99 0.20 TCGA-BR-8591-01 9 136406014 136406014 C T ADAMTSL2 Silent p.D191D 0.22 TCGA-BR-8591-01 9 136594912 136594912 A G SARDH Missense_Mutation p.V297A 0.22 deleterious(0.01) possibly_damaging(0.521) TCGA-BR-8591-01 9 138377333 138377333 G A PPP1R26 Missense_Mutation p.R326H 0.21 tolerated(0.24) benign(0.002) TCGA-BR-8591-01 9 138387292 138387292 C A C9orf116 Missense_Mutation p.R131M 0.29 deleterious(0.04) possibly_damaging(0.8) TCGA-BR-8591-01 9 138713232 138713233 - G CAMSAP1 Frame_Shift_Ins p.R1092Pfs*30 0.21 TCGA-BR-8591-01 9 139400304 139400304 G A NOTCH1 Silent p.D1348D 0.25 TCGA-BR-8591-01 9 139571443 139571443 G A AGPAT2 Silent p.A154A 0.27 TCGA-BR-8591-01 9 139617494 139617494 G A FAM69B Silent p.R188R 0.28 TCGA-BR-8591-01 9 139726255 139726255 G A RABL6 Missense_Mutation p.G181S 0.29 tolerated(0.09) possibly_damaging(0.882) TCGA-BR-8591-01 9 139836927 139836927 G A FBXW5 Intron 0.36 TCGA-BR-8591-01 9 139910762 139910762 C T ABCA2 Missense_Mutation p.A1029T 0.33 deleterious(0) probably_damaging(0.999) TCGA-BR-8591-01 9 140006327 140006327 C - DPP7 Frame_Shift_Del p.G402Vfs*28 0.27 TCGA-BR-8591-01 9 140055866 140055866 C T GRIN1 Missense_Mutation p.R510W 0.16 deleterious(0.04) probably_damaging(0.947) TCGA-BR-8591-01 9 140127764 140127764 C T SLC34A3 Silent p.L222L 0.41 TCGA-BR-8591-01 9 140140252 140140252 C T FAM166A Missense_Mutation p.R37H 0.20 deleterious(0.04) benign(0.14) TCGA-BR-8591-01 9 140354825 140354825 G A PNPLA7 3'UTR 0.14 TCGA-BR-8591-01 9 140400150 140400150 G A PNPLA7 Silent p.H463H 0.30 TCGA-BR-8591-01 9 140416106 140416106 G T PNPLA7 Silent p.T313T 0.15 TCGA-BR-8591-01 9 140508231 140508231 G A ARRDC1 Intron 0.21 TCGA-BR-8591-01 9 140611266 140611266 G A EHMT1 Missense_Mutation p.A92T 0.27 tolerated_low_confidence(0.09) benign(0.065) TCGA-BR-8591-01 9 141016165 141016165 G A CACNA1B Missense_Mutation p.S2245N 0.29 tolerated(0.1) benign(0.018) TCGA-BR-8591-01 9 16435650 16435650 C T BNC2 Missense_Mutation p.V848M 0.29 tolerated(0.16) benign(0.254) TCGA-BR-8591-01 9 18504860 18504860 G A ADAMTSL1 Missense_Mutation p.D33N 0.22 deleterious(0) possibly_damaging(0.702) TCGA-BR-8591-01 9 20363376 20363376 T - MLLT3 Intron 0.25 TCGA-BR-8591-01 9 21165942 21165942 C T IFNA21 3'UTR 0.56 TCGA-BR-8591-01 9 27036478 27036479 AA - IFT74 Intron 0.20 TCGA-BR-8591-01 9 32633025 32633025 T - TAF1L Frame_Shift_Del p.A852Pfs*14 0.23 TCGA-BR-8591-01 9 33026949 33026949 T - DNAJA1 Frame_Shift_Del p.F92Lfs*22 0.24 TCGA-BR-8591-01 9 34372511 34372511 T C KIAA1161 Missense_Mutation p.H110R 0.36 tolerated(0.18) benign(0.001) TCGA-BR-8591-01 9 34996554 34996554 C - DNAJB5 Frame_Shift_Del p.P284Qfs*21 0.25 TCGA-BR-8591-01 9 35108148 35108148 C - FAM214B Frame_Shift_Del p.A42Rfs*25 0.31 TCGA-BR-8591-01 9 35749356 35749356 G T RGP1 5'UTR 0.20 TCGA-BR-8591-01 9 36657290 36657290 C T MELK Missense_Mutation p.A369V 0.29 tolerated(0.58) benign(0) TCGA-BR-8591-01 9 37745147 37745147 G T FRMPD1 Missense_Mutation p.D1040Y 0.25 deleterious_low_confidence(0) benign(0.413) TCGA-BR-8591-01 9 37763751 37763751 G A TRMT10B Splice_Site p.X140_splice 0.31 TCGA-BR-8591-01 9 39073899 39073899 T - CNTNAP3 Frame_Shift_Del p.E1286Kfs*27 0.09 TCGA-BR-8591-01 9 40774872 40774872 T - ZNF658 Frame_Shift_Del p.I135Yfs*10 0.21 TCGA-BR-8591-01 9 4117878 4117878 A G GLIS3 Missense_Mutation p.F534L 0.07 deleterious(0) probably_damaging(0.962) TCGA-BR-8591-01 9 429834 429834 T C DOCK8 Missense_Mutation p.F1536L 0.30 tolerated(0.06) benign(0.103) TCGA-BR-8591-01 9 4635321 4635321 G T SPATA6L Intron 0.20 TCGA-BR-8591-01 9 4663138 4663138 C T PPAPDC2 Missense_Mutation p.R255W 0.26 deleterious(0) probably_damaging(1) TCGA-BR-8591-01 9 5126824 5126825 - T JAK2 3'UTR 0.25 TCGA-BR-8591-01 9 5233697 5233697 T C INSL4 Silent p.G80G 0.35 TCGA-BR-8591-01 9 72067157 72067157 T C APBA1 Missense_Mutation p.R617G 0.24 deleterious(0) probably_damaging(0.999) TCGA-BR-8591-01 9 72082837 72082837 C T APBA1 Missense_Mutation p.A462T 0.25 deleterious(0.04) possibly_damaging(0.639) TCGA-BR-8591-01 9 72901115 72901115 G T SMC5 Splice_Site p.X328_splice 0.24 TCGA-BR-8591-01 9 74817603 74817603 C T GDA Missense_Mutation p.A110V 0.24 tolerated(0.8) benign(0.001) TCGA-BR-8591-01 9 78911728 78911728 G A PCSK5 Missense_Mutation p.R1157H 0.30 tolerated(0.81) benign(0) TCGA-BR-8591-01 9 79323686 79323686 T G PRUNE2 Silent p.T1168T 0.31 TCGA-BR-8591-01 9 80943978 80943978 A T PSAT1 Missense_Mutation p.K363N 0.24 tolerated(0.23) benign(0) TCGA-BR-8591-01 9 8341229 8341229 T C PTPRD Missense_Mutation p.S1663G 0.23 deleterious(0) probably_damaging(0.947) TCGA-BR-8591-01 9 88631565 88631566 - A NAA35 Frame_Shift_Ins p.T563Nfs*29 0.24 TCGA-BR-8591-01 9 89560829 89560829 C T GAS1 Missense_Mutation p.G289D 0.38 deleterious_low_confidence(0.03) probably_damaging(0.931) TCGA-BR-8591-01 9 90317955 90317955 C T DAPK1 Silent p.P961P 0.22 TCGA-BR-8591-01 9 90321386 90321386 G A DAPK1 Missense_Mutation p.V1134M 0.21 tolerated(0.2) possibly_damaging(0.67) TCGA-BR-8591-01 9 92006233 92006233 C A SEMA4D Silent p.V240V 0.27 TCGA-BR-8591-01 9 95033316 95033316 G A IARS Nonsense_Mutation p.R386* 0.26 TCGA-BR-8591-01 9 99220764 99220764 C A HABP4 Nonsense_Mutation p.Y151* 0.26 TCGA-BR-8591-01 X 100601606 100601606 C T TIMM8A Missense_Mutation p.A59T 0.06 tolerated(1) benign(0.008) TCGA-BR-8591-01 X 100807852 100807852 C A ARMCX1 5'UTR 0.31 TCGA-BR-8591-01 X 106844186 106844186 G T FRMPD3 Missense_Mutation p.G1006C 0.54 deleterious_low_confidence(0.02) possibly_damaging(0.513) TCGA-BR-8591-01 X 107867516 107867516 C T COL4A5 Missense_Mutation p.P990S 0.53 unknown(0) TCGA-BR-8591-01 X 11162014 11162014 G T ARHGAP6 Intron 0.53 TCGA-BR-8591-01 X 112054536 112054536 A G AMOT Missense_Mutation p.M493T 0.49 unknown(0) TCGA-BR-8591-01 X 117079546 117079546 T - KLHL13 Intron 0.44 TCGA-BR-8591-01 X 123519752 123519752 T C TENM1 Missense_Mutation p.T1951A 0.58 tolerated(1) benign(0.001) TCGA-BR-8591-01 X 129498774 129498774 A - SLC25A14 Intron 0.42 TCGA-BR-8591-01 X 131762868 131762868 C A HS6ST2 Missense_Mutation p.G441C 0.36 deleterious(0) probably_damaging(1) TCGA-BR-8591-01 X 132161205 132161205 A - USP26 Frame_Shift_Del p.F348Lfs*7 0.42 TCGA-BR-8591-01 X 132888179 132888179 T C GPC3 Missense_Mutation p.H121R 0.54 tolerated(0.39) benign(0.015) TCGA-BR-8591-01 X 135314194 135314194 G - MAP7D3 Frame_Shift_Del p.Q308Rfs*2 0.32 TCGA-BR-8591-01 X 135431510 135431510 C T GPR112 Missense_Mutation p.S1882F 0.10 deleterious(0) possibly_damaging(0.593) TCGA-BR-8591-01 X 135763009 135763009 G T ARHGEF6 Missense_Mutation p.H529N 0.13 tolerated(0.31) benign(0.008) TCGA-BR-8591-01 X 13787350 13787350 T - OFD1 3'UTR 0.39 TCGA-BR-8591-01 X 140953267 140953268 AG T MAGEC3 Frame_Shift_Del p.K45Mfs*15 0.25 TCGA-BR-8591-01 X 150869519 150869519 C T PRRG3 3'UTR 0.47 TCGA-BR-8591-01 X 153050931 153050931 G A SRPK3 Missense_Mutation p.A554T 0.46 deleterious(0) possibly_damaging(0.849) TCGA-BR-8591-01 X 153073928 153073928 G A PDZD4 Silent p.S61S 0.44 TCGA-BR-8591-01 X 153220508 153220508 C T HCFC1 Silent p.T1114T 0.57 TCGA-BR-8591-01 X 153587361 153587361 C T FLNA Missense_Mutation p.G1489R 0.50 deleterious(0) probably_damaging(0.947) TCGA-BR-8591-01 X 1712646 1712646 C T AKAP17A Silent p.D97D 0.24 TCGA-BR-8591-01 X 23018779 23018779 A G DDX53 Missense_Mutation p.N202S 0.40 deleterious(0.02) benign(0.391) TCGA-BR-8591-01 X 24006030 24006030 G T KLHL15 3'UTR 0.17 TCGA-BR-8591-01 X 32383293 32383293 T C DMD Silent p.K1623K 0.47 TCGA-BR-8591-01 X 32481581 32481581 G T DMD Missense_Mutation p.T1136N 0.55 benign(0.062) TCGA-BR-8591-01 X 38144935 38144935 T - RPGR Frame_Shift_Del p.K1106Sfs*25 0.33 TCGA-BR-8591-01 X 49958701 49958701 G A AKAP4 Silent p.V221V 0.53 TCGA-BR-8591-01 X 49962241 49962241 C T AKAP4 Missense_Mutation p.C43Y 0.73 deleterious(0.03) benign(0.025) TCGA-BR-8591-01 X 50213598 50213598 G A DGKK RNA 0.55 TCGA-BR-8591-01 X 50378665 50378665 G A SHROOM4 Silent p.D136D 0.52 TCGA-BR-8591-01 X 51150040 51150040 G A CXorf67 Missense_Mutation p.A58T 0.44 deleterious(0.04) benign(0.362) TCGA-BR-8591-01 X 51638632 51638632 C T MAGED1 Missense_Mutation p.P233S 0.35 deleterious_low_confidence(0) unknown(0) TCGA-BR-8591-01 X 51641391 51641391 G A MAGED1 Nonsense_Mutation p.W639* 0.58 TCGA-BR-8591-01 X 52677445 52677445 A C SSX7 Missense_Mutation p.I111S 0.49 deleterious(0) possibly_damaging(0.843) TCGA-BR-8591-01 X 53222308 53222309 - G KDM5C Frame_Shift_Ins p.A1509Cfs*75 0.41 TCGA-BR-8591-01 X 56291858 56291859 - C KLF8 Frame_Shift_Ins p.K112Qfs*17 0.26 TCGA-BR-8591-01 X 63411525 63411525 A G AMER1 Missense_Mutation p.S548P 0.10 tolerated(0.13) benign(0.004) TCGA-BR-8591-01 X 64708739 64708739 G A ZC3H12B Missense_Mutation p.E20K 0.58 deleterious_low_confidence(0.03) benign(0.002) TCGA-BR-8591-01 X 64723102 64723102 C T ZC3H12B 3'UTR 0.44 TCGA-BR-8591-01 X 65428058 65428058 A G HEPH Missense_Mutation p.T899A 0.53 tolerated(0.33) benign(0.004) TCGA-BR-8591-01 X 68725672 68725672 A - FAM155B Frame_Shift_Del p.N185Tfs*40 0.56 TCGA-BR-8591-01 X 76855269 76855269 A G ATRX Silent p.S1906S 0.19 TCGA-BR-8591-01 X 77359863 77359863 T G PGK1 Missense_Mutation p.L9R 0.50 deleterious(0) probably_damaging(0.989) TCGA-BR-8591-01 X 83359598 83359598 C T RPS6KA6 Missense_Mutation p.R508H 0.40 tolerated(0.07) benign(0.421) TCGA-BR-8591-01 X 84534384 84534384 A C POF1B 3'UTR 0.68 TCGA-BR-8591-01 X 86888892 86888892 G A KLHL4 Missense_Mutation p.V565I 0.41 deleterious(0.02) probably_damaging(0.94) TCGA-BR-8591-01 X 96013243 96013243 G A DIAPH2 Missense_Mutation p.A145T 0.55 tolerated(1) unknown(0) TCGA-BR-8591-01 X 96139267 96139267 C T RPA4 5'UTR 0.38 TCGA-BR-8591-01 X 99663287 99663287 G A PCDH19 Silent p.L103L 0.07 TCGA-BR-8591-01 Y 14847611 14847611 T - USP9Y Frame_Shift_Del p.F243Lfs*6 0.56 TCGA-BR-8592-01 10 89504933 89504933 C T PAPSS2 Nonsense_Mutation p.R556* 0.10 TCGA-BR-8592-01 11 60640735 60640735 C T ZP1 Silent p.L405L 0.09 TCGA-BR-8592-01 12 52695729 52695729 G A KRT86 Missense_Mutation p.R10H 0.06 deleterious(0) possibly_damaging(0.53) TCGA-BR-8592-01 12 94642052 94642052 T C PLXNC1 Missense_Mutation p.L881P 0.15 deleterious(0.02) possibly_damaging(0.795) TCGA-BR-8592-01 13 25274960 25274960 C T ATP12A Missense_Mutation p.P600L 0.07 deleterious(0) probably_damaging(1) TCGA-BR-8592-01 14 107013107 107013107 C T IGHV3-49 Missense_Mutation p.G63E 0.09 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-BR-8592-01 14 20248864 20248864 G A OR4M1 Missense_Mutation p.R128Q 0.17 tolerated(0.14) benign(0.011) TCGA-BR-8592-01 15 25334031 25334031 G T SNORD116-20 RNA 0.10 TCGA-BR-8592-01 16 67650711 67650711 G A CTCF Missense_Mutation p.R339Q 0.15 deleterious(0) possibly_damaging(0.856) TCGA-BR-8592-01 16 68842633 68842633 A G CDH1 Missense_Mutation p.Y190C 0.13 deleterious(0) probably_damaging(1) TCGA-BR-8592-01 17 36499035 36499035 T C GPR179 Missense_Mutation p.K213R 0.17 deleterious(0) probably_damaging(0.999) TCGA-BR-8592-01 17 8424505 8424505 G T MYH10 Missense_Mutation p.Q686K 0.12 probably_damaging(0.985) TCGA-BR-8592-01 19 30935607 30935607 C T ZNF536 Missense_Mutation p.R380W 0.09 deleterious(0) probably_damaging(0.999) TCGA-BR-8592-01 19 56565060 56565060 C T NLRP5 Missense_Mutation p.S1062L 0.16 tolerated(0.25) benign(0.02) TCGA-BR-8592-01 19 8176641 8176641 G A FBN3 Silent p.C1325C 0.07 TCGA-BR-8592-01 1 176769239 176769239 G A PAPPA2 Missense_Mutation p.V1725I 0.06 tolerated(0.23) benign(0.007) TCGA-BR-8592-01 1 207110476 207110477 - G PIGR Frame_Shift_Ins p.S337Lfs*12 0.11 TCGA-BR-8592-01 1 207753744 207753744 A C CR1 Missense_Mutation p.E1699A 0.08 tolerated(0.97) benign(0.008) TCGA-BR-8592-01 1 32800131 32800131 A G MARCKSL1 3'UTR 0.20 TCGA-BR-8592-01 1 6253081 6253081 C T RPL22 Missense_Mutation p.G51R 0.16 deleterious(0.02) possibly_damaging(0.612) TCGA-BR-8592-01 1 75072545 75072545 G A C1orf173 Missense_Mutation p.P410L 0.12 tolerated(0.27) benign(0.131) TCGA-BR-8592-01 20 30585193 30585193 C T XKR7 Missense_Mutation p.T558M 0.09 deleterious(0.02) probably_damaging(0.985) TCGA-BR-8592-01 20 37356775 37356775 C T SLC32A1 Silent p.V357V 0.12 TCGA-BR-8592-01 20 54824440 54824440 G A MC3R Missense_Mutation p.V181I 0.09 tolerated(0.99) benign(0.044) TCGA-BR-8592-01 21 30949440 30949440 G T GRIK1 Missense_Mutation p.F658L 0.10 deleterious(0) probably_damaging(0.992) TCGA-BR-8592-01 2 132021446 132021446 C T POTEE Silent p.T806T 0.09 TCGA-BR-8592-01 2 179640850 179640850 G A TTN Missense_Mutation p.A1914V 0.05 TCGA-BR-8592-01 2 196689076 196689076 C T DNAH7 Missense_Mutation p.R3065Q 0.07 deleterious(0.03) possibly_damaging(0.845) TCGA-BR-8592-01 3 14744671 14744671 G A C3orf20 Silent p.P260P 0.08 TCGA-BR-8592-01 5 140174652 140174652 G A PCDHA2 Missense_Mutation p.V35I 0.11 tolerated_low_confidence(0.15) benign(0.319) TCGA-BR-8592-01 5 32239240 32239240 A C MTMR12 Missense_Mutation p.L404R 0.21 deleterious(0.02) probably_damaging(1) TCGA-BR-8592-01 6 32052314 32052314 G A TNXB Silent p.P1107P 0.14 TCGA-BR-8592-01 8 139737660 139737660 G T COL22A1 Silent p.V721V 0.11 TCGA-BR-8592-01 8 26722428 26722428 G A ADRA1A Missense_Mutation p.P20L 0.09 deleterious(0.04) benign(0.046) TCGA-BR-8592-01 8 43197470 43197470 C A POTEA Intron 0.11 TCGA-BR-8592-01 8 57079229 57079229 T C PLAG1 Missense_Mutation p.Y359C 0.06 tolerated(0.07) probably_damaging(0.984) TCGA-BR-8592-01 8 61654739 61654739 C T CHD7 Missense_Mutation p.R250C 0.09 possibly_damaging(0.689) TCGA-BR-8592-01 X 110406248 110406248 G A PAK3 Missense_Mutation p.A228T 0.11 tolerated(0.05) probably_damaging(0.978) TCGA-BR-8592-01 X 119077495 119077495 G A NKAP Missense_Mutation p.S25L 0.13 deleterious(0.01) probably_damaging(0.978) TCGA-BR-8592-01 X 123525997 123525997 T C TENM1 Missense_Mutation p.T1865A 0.14 tolerated(0.64) benign(0.011) TCGA-BR-8592-01 X 151869826 151869826 C A MAGEA6 Silent p.I172I 0.11 TCGA-BR-8592-01 X 17153511 17153511 C T REPS2 Missense_Mutation p.P597L 0.08 tolerated(0.07) benign(0.021) TCGA-BR-8592-01 X 18238951 18238951 G A BEND2 5'UTR 0.09 TCGA-BR-8592-01 X 38420808 38420808 G A TSPAN7 Silent p.S3S 0.13 TCGA-BR-8676-01 10 105794506 105794506 G A COL17A1 Silent p.I1213I 0.23 TCGA-BR-8676-01 10 126301993 126301993 A C LHPP 3'UTR 0.18 TCGA-BR-8676-01 10 24832059 24832059 C A KIAA1217 Nonsense_Mutation p.S1287* 0.33 TCGA-BR-8676-01 10 24880828 24880828 C A ARHGAP21 Silent p.T1330T 0.21 TCGA-BR-8676-01 10 49482599 49482599 T C FRMPD2 Silent p.L4L 0.27 TCGA-BR-8676-01 11 130289118 130289118 T C ADAMTS8 Missense_Mutation p.N264D 0.08 deleterious(0.02) possibly_damaging(0.7) TCGA-BR-8676-01 11 62342958 62342958 C T TUT1 Missense_Mutation p.A783T 0.32 tolerated(0.1) benign(0.004) TCGA-BR-8676-01 11 92088531 92088531 G A FAT3 Missense_Mutation p.G1085S 0.12 probably_damaging(1) TCGA-BR-8676-01 12 29614836 29614836 T G OVCH1 Missense_Mutation p.K744T 0.06 deleterious(0.02) benign(0.106) TCGA-BR-8676-01 12 49431910 49431911 - A KMT2D Frame_Shift_Ins p.N3077* 0.32 TCGA-BR-8676-01 14 20692369 20692369 G A OR11H6 Nonsense_Mutation p.W167* 0.30 TCGA-BR-8676-01 14 67940343 67940343 C T TMEM229B Missense_Mutation p.A100T 0.31 deleterious(0.01) probably_damaging(0.973) TCGA-BR-8676-01 14 80677629 80677629 C T DIO2 Missense_Mutation p.V63I 0.42 tolerated(0.74) benign(0.02) TCGA-BR-8676-01 17 18638508 18638508 C A TRIM16L Missense_Mutation p.T261K 0.26 deleterious(0.03) benign(0.171) TCGA-BR-8676-01 17 19643782 19643782 G A ALDH3A1 Silent p.Y272Y 0.24 TCGA-BR-8676-01 17 27943176 27943176 G A CORO6 Silent p.D360D 0.11 TCGA-BR-8676-01 17 29219667 29219667 G C ATAD5 Missense_Mutation p.G1434A 0.36 tolerated(0.21) benign(0.006) TCGA-BR-8676-01 17 38954584 38954584 C T KRT28 Missense_Mutation p.R198Q 0.24 deleterious(0.03) benign(0.382) TCGA-BR-8676-01 17 4086813 4086832 GAGCCCAGCAGCTGGGCTGC - ANKFY1 Frame_Shift_Del p.A647Wfs*6 0.15 TCGA-BR-8676-01 17 40870044 40870044 C T EZH1 Missense_Mutation p.E325K 0.21 deleterious(0.02) possibly_damaging(0.629) TCGA-BR-8676-01 17 72346598 72346598 G T KIF19 Missense_Mutation p.E424D 0.12 tolerated(0.1) benign(0.06) TCGA-BR-8676-01 17 76496420 76496420 G A DNAH17-AS1 Missense_Mutation p.V118I 0.33 unknown(0) TCGA-BR-8676-01 17 77082045 77082045 C T ENGASE Silent p.L616L 0.19 TCGA-BR-8676-01 17 9471725 9471725 C T STX8 Missense_Mutation p.R27Q 0.38 deleterious(0.05) benign(0.034) TCGA-BR-8676-01 18 44627365 44627365 G A KATNAL2 Missense_Mutation p.E464K 0.30 tolerated(0.22) benign(0.142) TCGA-BR-8676-01 18 48422198 48422198 C - ME2 Frame_Shift_Del p.R4Gfs*2 0.15 TCGA-BR-8676-01 18 65179255 65179255 C T DSEL Missense_Mutation p.G874E 0.24 deleterious(0) probably_damaging(1) TCGA-BR-8676-01 19 11200076 11200076 C A LDLR 5'UTR 0.43 TCGA-BR-8676-01 19 18561438 18561438 C T ELL Silent p.R438R 0.33 TCGA-BR-8676-01 19 20735356 20735356 C A ZNF737 Missense_Mutation p.D51Y 0.15 deleterious(0.02) possibly_damaging(0.906) TCGA-BR-8676-01 19 2217887 2217887 C T DOT1L Silent p.S887S 0.30 TCGA-BR-8676-01 19 36050082 36050082 G A ATP4A Silent p.S356S 0.33 TCGA-BR-8676-01 19 37117675 37117675 A C ZNF382 Missense_Mutation p.E292D 0.15 tolerated(0.14) benign(0.036) TCGA-BR-8676-01 19 37734283 37734283 G A ZNF383 Missense_Mutation p.R382H 0.25 tolerated(0.11) benign(0.005) TCGA-BR-8676-01 19 48624487 48624487 G A LIG1 Silent p.Y775Y 0.27 TCGA-BR-8676-01 19 51322476 51322476 C T KLK1 Missense_Mutation p.E255K 0.25 tolerated(1) benign(0) TCGA-BR-8676-01 19 52954815 52954815 G A ZNF578 5'Flank 0.12 TCGA-BR-8676-01 19 56369527 56369527 G A NLRP4 Silent p.P256P 0.23 TCGA-BR-8676-01 19 58084322 58084322 T C ZNF416 Missense_Mutation p.H317R 0.31 tolerated(0.36) benign(0.016) TCGA-BR-8676-01 19 58864711 58864711 G A A1BG Intron 0.26 TCGA-BR-8676-01 1 152084187 152084187 C T TCHH Silent p.R502R 0.05 TCGA-BR-8676-01 1 156675185 156675185 T A CRABP2 Missense_Mutation p.E18D 0.30 tolerated(0.24) benign(0.001) TCGA-BR-8676-01 1 210329223 210329223 A C SYT14 Missense_Mutation p.H486P 0.23 deleterious(0) probably_damaging(0.993) TCGA-BR-8676-01 1 211192300 211192300 A T KCNH1 Missense_Mutation p.L286H 0.23 deleterious(0.01) probably_damaging(0.99) TCGA-BR-8676-01 1 22828817 22828817 G T ZBTB40 Missense_Mutation p.L350F 0.32 deleterious(0.01) possibly_damaging(0.587) TCGA-BR-8676-01 1 228346653 228346653 C G GJC2 Silent p.T398T 0.19 TCGA-BR-8676-01 1 2520061 2520061 A C FAM213B Missense_Mutation p.K183Q 0.24 tolerated(0.07) benign(0.328) TCGA-BR-8676-01 1 33960894 33960894 G A ZSCAN20 Missense_Mutation p.E984K 0.15 deleterious(0) probably_damaging(0.998) TCGA-BR-8676-01 1 6202574 6202574 C T CHD5 Missense_Mutation p.R712H 0.24 deleterious(0) probably_damaging(0.998) TCGA-BR-8676-01 1 66821300 66821300 T C PDE4B Silent p.L280L 0.19 TCGA-BR-8676-01 1 85510984 85510984 G A MCOLN3 Silent p.C20C 0.30 TCGA-BR-8676-01 20 1552595 1552595 G T SIRPB1 Missense_Mutation p.F174L 0.23 deleterious(0.02) probably_damaging(0.968) TCGA-BR-8676-01 20 18005465 18005465 C T OVOL2 Missense_Mutation p.V215I 0.24 deleterious(0.02) probably_damaging(0.999) TCGA-BR-8676-01 20 32265097 32265097 C T E2F1 Missense_Mutation p.D294N 0.18 deleterious(0) possibly_damaging(0.651) TCGA-BR-8676-01 20 47991181 47991181 G A KCNB1 Missense_Mutation p.R306C 0.22 deleterious(0) probably_damaging(1) TCGA-BR-8676-01 21 33065757 33065757 G A SCAF4 Nonsense_Mutation p.R455* 0.28 TCGA-BR-8676-01 22 24581841 24581841 G T SUSD2 Missense_Mutation p.R428L 0.29 tolerated(0.7) benign(0.047) TCGA-BR-8676-01 2 141272252 141272252 C T LRP1B Missense_Mutation p.D2747N 0.18 benign(0) TCGA-BR-8676-01 2 211540487 211540487 C T CPS1 Silent p.N1405N 0.32 TCGA-BR-8676-01 2 27887266 27887266 G C SLC4A1AP Missense_Mutation p.R216T 0.27 deleterious(0) possibly_damaging(0.469) TCGA-BR-8676-01 2 85780516 85780516 G T GGCX Missense_Mutation p.P332T 0.05 deleterious(0.01) probably_damaging(0.996) TCGA-BR-8676-01 3 119087339 119087339 T G ARHGAP31 Silent p.T108T 0.27 TCGA-BR-8676-01 3 148897410 148897410 G A CP Missense_Mutation p.S865F 0.30 deleterious(0.01) probably_damaging(0.966) TCGA-BR-8676-01 3 148897421 148897421 G C CP Missense_Mutation p.I861M 0.29 deleterious(0) possibly_damaging(0.846) TCGA-BR-8676-01 3 151164364 151164364 T - IGSF10 Frame_Shift_Del p.V1136* 0.37 TCGA-BR-8676-01 3 172165518 172165518 G A GHSR Missense_Mutation p.T229M 0.39 deleterious(0.02) probably_damaging(0.993) TCGA-BR-8676-01 3 178928079 178928079 G A PIK3CA Missense_Mutation p.E453K 0.55 tolerated(0.06) possibly_damaging(0.801) TCGA-BR-8676-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.56 deleterious(0.04) probably_damaging(0.96) TCGA-BR-8676-01 3 45152099 45152099 A G CDCP1 Missense_Mutation p.L297P 0.28 deleterious(0) probably_damaging(0.998) TCGA-BR-8676-01 3 48696662 48696662 G A CELSR3 Nonsense_Mutation p.Q1136* 0.23 TCGA-BR-8676-01 4 121702362 121702362 T G PRDM5 Missense_Mutation p.K460T 0.27 tolerated(0.08) probably_damaging(0.994) TCGA-BR-8676-01 4 126389829 126389829 A G FAT4 Missense_Mutation p.D4021G 0.34 probably_damaging(1) TCGA-BR-8676-01 4 134072673 134072673 G A PCDH10 Missense_Mutation p.A460T 0.30 tolerated(0.08) benign(0.283) TCGA-BR-8676-01 4 155254497 155254497 C T DCHS2 Missense_Mutation p.G456S 0.23 deleterious(0.02) probably_damaging(0.957) TCGA-BR-8676-01 4 155507816 155507816 C T FGA Silent p.P255P 0.21 TCGA-BR-8676-01 4 156294393 156294393 C A MAP9 Missense_Mutation p.V126L 0.34 tolerated(0.79) benign(0.073) TCGA-BR-8676-01 4 20529995 20529995 G A SLIT2 Intron 0.26 TCGA-BR-8676-01 4 55161419 55161419 G A PDGFRA Missense_Mutation p.V1084M 0.05 deleterious_low_confidence(0) possibly_damaging(0.826) TCGA-BR-8676-01 4 5798905 5798905 G T EVC Missense_Mutation p.E681D 0.25 deleterious(0.02) probably_damaging(0.997) TCGA-BR-8676-01 5 161128646 161128646 C A GABRA6 Missense_Mutation p.A410D 0.31 tolerated(0.49) benign(0.001) TCGA-BR-8676-01 5 176719013 176719013 A T NSD1 Missense_Mutation p.K2106M 0.12 deleterious(0) probably_damaging(0.98) TCGA-BR-8676-01 5 177637620 177637620 A C HNRNPAB Missense_Mutation p.Y332S 0.33 deleterious(0) unknown(0) TCGA-BR-8676-01 5 19473796 19473796 G A CDH18 Missense_Mutation p.R638C 0.27 deleterious(0.01) probably_damaging(0.938) TCGA-BR-8676-01 5 33936946 33936946 C T RXFP3 Missense_Mutation p.A34V 0.33 tolerated_low_confidence(0.4) benign(0.002) TCGA-BR-8676-01 5 3599908 3599908 G T IRX1 Missense_Mutation p.L282F 0.29 tolerated(0.34) probably_damaging(0.969) TCGA-BR-8676-01 5 45396783 45396783 G T HCN1 Nonsense_Mutation p.Y347* 0.26 TCGA-BR-8676-01 5 9380056 9380056 C T SEMA5A Translation_Start_Site p.M1? 0.28 deleterious_low_confidence(0.02) benign(0.007) TCGA-BR-8676-01 6 29591798 29591798 C A GABBR1 Missense_Mutation p.D221Y 0.27 deleterious(0) probably_damaging(0.993) TCGA-BR-8676-01 7 123594445 123594445 C T SPAM1 Missense_Mutation p.A274V 0.23 deleterious(0.02) possibly_damaging(0.58) TCGA-BR-8676-01 7 149489292 149489292 C T SSPO Intron 0.18 TCGA-BR-8676-01 7 151878863 151878863 G A KMT2C Nonsense_Mutation p.R2028* 0.28 TCGA-BR-8676-01 7 151970925 151970925 C T KMT2C Missense_Mutation p.A293T 0.09 probably_damaging(1) TCGA-BR-8676-01 7 64166935 64166936 TT - ZNF107 Frame_Shift_Del p.F85* 0.21 TCGA-BR-8676-01 7 94056548 94056548 C A COL1A2 Missense_Mutation p.H1070N 0.14 unknown(0) TCGA-BR-8676-01 8 105405182 105405182 A C DPYS Missense_Mutation p.F425V 0.20 tolerated(0.1) possibly_damaging(0.799) TCGA-BR-8676-01 8 144332286 144332286 G A ZFP41 Silent p.E91E 0.22 TCGA-BR-8676-01 8 39550198 39550198 G T ADAM18 Missense_Mutation p.G634V 0.12 deleterious(0) probably_damaging(1) TCGA-BR-8676-01 8 48743232 48743232 G A PRKDC Silent p.H2776H 0.43 TCGA-BR-8676-01 9 137804877 137804877 G A FCN1 Silent p.D151D 0.23 TCGA-BR-8676-01 9 139699029 139699029 A C CCDC183 Missense_Mutation p.K248Q 0.37 tolerated(0.15) benign(0.406) TCGA-BR-8676-01 9 86004624 86004624 C G FRMD3 Splice_Site p.X50_splice 0.33 TCGA-BR-8676-01 X 130408109 130408109 A G IGSF1 Silent p.L1280L 0.51 TCGA-BR-8676-01 X 77245091 77245091 T A ATP7A Missense_Mutation p.S325T 0.08 tolerated(0.25) benign(0.003) TCGA-BR-8676-01 X 78426685 78426685 T A GPR174 Missense_Mutation p.L61I 0.64 deleterious(0) probably_damaging(0.99) TCGA-BR-8677-01 10 105777982 105777982 A C SLK Missense_Mutation p.Q981P 0.20 deleterious(0) probably_damaging(0.968) TCGA-BR-8677-01 11 124551345 124551345 A G SPA17 Missense_Mutation p.H72R 0.11 tolerated(0.12) benign(0.03) TCGA-BR-8677-01 11 2424220 2424220 C T TSSC4 Silent p.N119N 0.15 TCGA-BR-8677-01 11 5530122 5530122 A G UBQLN3 Missense_Mutation p.F223L 0.10 tolerated(1) possibly_damaging(0.663) TCGA-BR-8677-01 11 56184809 56184809 G C OR5R1 Silent p.A300A 0.10 TCGA-BR-8677-01 11 57373905 57373905 C T SERPING1 Missense_Mutation p.P305L 0.14 tolerated(0.33) benign(0.065) TCGA-BR-8677-01 11 88583181 88583181 C A GRM5 Missense_Mutation p.L268F 0.09 tolerated(0.06) probably_damaging(0.998) TCGA-BR-8677-01 11 9069615 9069615 C T SCUBE2 Missense_Mutation p.R557H 0.17 tolerated(0.61) benign(0.002) TCGA-BR-8677-01 12 333238 333238 G A SLC6A13 Missense_Mutation p.R411C 0.11 deleterious(0) probably_damaging(0.996) TCGA-BR-8677-01 13 28136828 28136828 G A LNX2 Nonsense_Mutation p.R316* 0.10 TCGA-BR-8677-01 13 36049973 36049973 C A MAB21L1 Missense_Mutation p.K101N 0.06 deleterious(0.03) probably_damaging(1) TCGA-BR-8677-01 14 45603647 45603647 C G FKBP3 Missense_Mutation p.V5L 0.09 tolerated(0.3) benign(0.014) TCGA-BR-8677-01 14 74179980 74179980 A G PNMA1 Silent p.R121R 0.07 TCGA-BR-8677-01 16 112868 112868 G A RHBDF1 Missense_Mutation p.R234C 0.15 deleterious(0.04) benign(0.015) TCGA-BR-8677-01 16 3140332 3140332 C T ZSCAN10 Missense_Mutation p.R313H 0.12 tolerated(0.21) benign(0.016) TCGA-BR-8677-01 16 51174200 51174200 G C SALL1 Missense_Mutation p.P645A 0.17 tolerated(0.31) benign(0.001) TCGA-BR-8677-01 16 61687818 61687818 C A CDH8 Missense_Mutation p.K698N 0.06 deleterious(0) benign(0.437) TCGA-BR-8677-01 16 68845701 68845703 TGT - CDH1 In_Frame_Del p.M316_F317delinsI 0.17 TCGA-BR-8677-01 17 40556837 40556837 G A PTRF Silent p.D347D 0.23 TCGA-BR-8677-01 17 46262101 46262101 T C SKAP1 Missense_Mutation p.D184G 0.11 tolerated(0.4) benign(0.028) TCGA-BR-8677-01 17 4794803 4794803 G A MINK1 Missense_Mutation p.R598Q 0.18 tolerated(0.51) probably_damaging(0.921) TCGA-BR-8677-01 17 74309056 74309056 C T PRPSAP1 Silent p.A298A 0.08 TCGA-BR-8677-01 17 9792816 9792816 G A GLP2R Missense_Mutation p.G486S 0.08 tolerated(0.73) benign(0.002) TCGA-BR-8677-01 18 44260284 44260284 G A ST8SIA5 Silent p.N284N 0.09 TCGA-BR-8677-01 18 8784659 8784659 G A SOGA2 Missense_Mutation p.A517T 0.06 tolerated(0.68) benign(0.005) TCGA-BR-8677-01 19 23299896 23299896 G T ZNF730 5'UTR 0.14 TCGA-BR-8677-01 19 3452579 3452579 G A NFIC Missense_Mutation p.R395H 0.05 deleterious(0) probably_damaging(1) TCGA-BR-8677-01 19 36322010 36322010 C T NPHS1 Silent p.L1142L 0.08 TCGA-BR-8677-01 19 43244641 43244641 G T PSG3 5'UTR 0.09 TCGA-BR-8677-01 19 43433795 43433795 C T PSG7 Missense_Mutation p.D170N 0.08 tolerated(0.06) benign(0.031) TCGA-BR-8677-01 19 44097366 44097366 G A IRGQ Silent p.A228A 0.10 TCGA-BR-8677-01 19 52538109 52538109 G A ZNF432 Missense_Mutation p.R275C 0.09 deleterious(0.03) possibly_damaging(0.88) TCGA-BR-8677-01 19 52817468 52817468 C G ZNF480 Missense_Mutation p.D45E 0.06 deleterious(0.04) benign(0.006) TCGA-BR-8677-01 19 53344459 53344459 A G ZNF468 Missense_Mutation p.V363A 0.10 tolerated(0.81) possibly_damaging(0.822) TCGA-BR-8677-01 19 57088331 57088331 G T ZNF470 Silent p.G178G 0.15 TCGA-BR-8677-01 1 14142940 14142940 G A PRDM2 Silent p.A1685A 0.09 TCGA-BR-8677-01 1 156816537 156816537 G A INSRR Silent p.N528N 0.09 TCGA-BR-8677-01 1 204587773 204587773 C T LRRN2 Missense_Mutation p.E450K 0.09 deleterious(0) probably_damaging(0.985) TCGA-BR-8677-01 1 42047175 42047175 G A HIVEP3 Silent p.P1098P 0.15 TCGA-BR-8677-01 1 89357192 89357192 G A GTF2B 5'UTR 0.18 TCGA-BR-8677-01 22 19394740 19394740 T C HIRA Missense_Mutation p.D90G 0.08 deleterious(0) probably_damaging(0.963) TCGA-BR-8677-01 22 46725338 46725338 C T GTSE1 Silent p.I670I 0.17 TCGA-BR-8677-01 22 50664332 50664332 G A TUBGCP6 Missense_Mutation p.S625L 0.12 deleterious(0) benign(0.147) TCGA-BR-8677-01 2 152385745 152385745 G A NEB Silent p.D7238D 0.16 TCGA-BR-8677-01 2 179587650 179587650 C T TTN Missense_Mutation p.V7326I 0.14 TCGA-BR-8677-01 2 198949579 198949579 A C PLCL1 Silent p.V446V 0.21 TCGA-BR-8677-01 2 242683123 242683123 G A D2HGDH Missense_Mutation p.G193R 0.12 deleterious(0) probably_damaging(1) TCGA-BR-8677-01 3 123987823 123987823 C T KALRN Silent p.D228D 0.15 TCGA-BR-8677-01 3 129325170 129325170 G A PLXND1 Missense_Mutation p.H105Y 0.19 deleterious(0.03) benign(0.059) TCGA-BR-8677-01 3 42261066 42261066 G A TRAK1 Missense_Mutation p.E682K 0.08 deleterious(0.02) probably_damaging(0.991) TCGA-BR-8677-01 3 47041809 47041809 C A NBEAL2 Missense_Mutation p.S1407Y 0.10 deleterious(0) probably_damaging(0.984) TCGA-BR-8677-01 3 93615512 93615512 C G PROS1 Missense_Mutation p.L291F 0.13 tolerated(0.49) probably_damaging(0.939) TCGA-BR-8677-01 4 1388882 1388882 G A CRIPAK Missense_Mutation p.V195M 0.64 tolerated(0.33) possibly_damaging(0.781) TCGA-BR-8677-01 4 148575180 148575180 G A PRMT10 Missense_Mutation p.S623F 0.20 deleterious(0) possibly_damaging(0.474) TCGA-BR-8677-01 5 115783361 115783361 C T SEMA6A Missense_Mutation p.V681M 0.06 tolerated(0.26) benign(0.006) TCGA-BR-8677-01 5 128864285 128864285 G A ADAMTS19 Missense_Mutation p.G409S 0.12 tolerated(0.3) possibly_damaging(0.888) TCGA-BR-8677-01 5 140718568 140718568 C A PCDHGA2 Nonsense_Mutation p.C10* 0.10 TCGA-BR-8677-01 5 176301546 176301546 C T UNC5A Missense_Mutation p.R453W 0.08 deleterious(0) probably_damaging(1) TCGA-BR-8677-01 5 1798960 1798960 T C MRPL36 Silent p.L30L 0.18 TCGA-BR-8677-01 5 2752817 2752817 C T C5orf38 Silent p.V94V 0.06 TCGA-BR-8677-01 5 53751847 53751847 C T HSPB3 Silent p.D76D 0.10 TCGA-BR-8677-01 6 27101073 27101073 A T HIST1H2AG Nonsense_Mutation p.K75* 0.11 TCGA-BR-8677-01 6 29012864 29012864 A C OR2W1 Missense_Mutation p.V30G 0.08 deleterious(0.01) possibly_damaging(0.748) TCGA-BR-8677-01 6 31838613 31838613 C T SLC44A4 Missense_Mutation p.V305M 0.12 deleterious(0.04) probably_damaging(0.96) TCGA-BR-8677-01 6 41160244 41160244 C A TREML2 Missense_Mutation p.S296I 0.11 deleterious(0) possibly_damaging(0.839) TCGA-BR-8677-01 6 79724828 79724828 C T PHIP Missense_Mutation p.G499R 0.10 deleterious(0.01) probably_damaging(0.997) TCGA-BR-8677-01 7 15425094 15425094 C T AGMO Missense_Mutation p.E351K 0.12 tolerated(0.6) benign(0.065) TCGA-BR-8677-01 7 16841334 16841334 G A AGR2 Silent p.A29A 0.07 TCGA-BR-8677-01 7 64388475 64388475 C T ZNF273 Missense_Mutation p.P257S 0.15 tolerated(0.09) benign(0) TCGA-BR-8677-01 8 101178164 101178164 C T SPAG1 Missense_Mutation p.T88I 0.09 deleterious(0) probably_damaging(0.959) TCGA-BR-8677-01 8 133900456 133900456 C A TG Missense_Mutation p.L802M 0.11 deleterious(0.01) probably_damaging(0.955) TCGA-BR-8677-01 8 142500353 142500353 G A MROH5 3'Flank 0.09 TCGA-BR-8677-01 8 75932271 75932271 G A CRISPLD1 Missense_Mutation p.E401K 0.09 tolerated(0.17) possibly_damaging(0.627) TCGA-BR-8677-01 8 99441350 99441350 C T KCNS2 Silent p.V381V 0.12 TCGA-BR-8677-01 9 101148039 101148039 C T GABBR2 Silent p.S515S 0.17 TCGA-BR-8677-01 9 101904872 101904872 C T TGFBR1 Missense_Mutation p.S287F 0.24 deleterious(0) probably_damaging(0.985) TCGA-BR-8677-01 9 134404543 134404543 G A UCK1 Silent p.T165T 0.07 TCGA-BR-8677-01 X 127185061 127185061 G T ACTRT1 Nonsense_Mutation p.C375* 0.05 TCGA-BR-8677-01 X 138689888 138689888 G T MCF2 Silent p.S560S 0.11 TCGA-BR-8677-01 X 144906323 144906326 AACC - SLITRK2 Frame_Shift_Del p.N794Kfs*92 0.20 TCGA-BR-8677-01 X 154493546 154493546 G A RAB39B Missense_Mutation p.R10W 0.06 deleterious(0.01) benign(0.21) TCGA-BR-8677-01 X 30578197 30578197 A C CXorf21 Missense_Mutation p.F92L 0.05 tolerated(0.72) benign(0.009) TCGA-BR-8677-01 X 30578199 30578199 A G CXorf21 Missense_Mutation p.F92L 0.05 tolerated(0.72) benign(0.009) TCGA-BR-8677-01 X 35985795 35985795 C T CXorf22 Missense_Mutation p.R554C 0.08 tolerated(0.19) benign(0.006) TCGA-BR-8677-01 X 48433596 48433596 G A RBM3 Missense_Mutation p.V10M 0.19 deleterious(0) possibly_damaging(0.822) TCGA-BR-8677-01 X 77528391 77528391 C A CYSLTR1 Missense_Mutation p.A285S 0.13 deleterious(0) probably_damaging(0.999) TCGA-BR-8678-01 10 95557278 95557278 G A LGI1 Silent p.S464S 0.41 TCGA-BR-8678-01 11 10785357 10785357 C T CTR9 Silent p.Y375Y 0.73 TCGA-BR-8678-01 11 116691970 116691970 C T APOA4 Silent p.A268A 0.21 TCGA-BR-8678-01 11 119002253 119002253 C T HINFP Silent p.F140F 0.11 TCGA-BR-8678-01 11 124487353 124487353 G A PANX3 Missense_Mutation p.D170N 0.60 tolerated(0.35) benign(0.11) TCGA-BR-8678-01 11 20122686 20122686 G A NAV2 Missense_Mutation p.A2188T 0.20 tolerated(0.06) benign(0.228) TCGA-BR-8678-01 11 2418158 2418158 G A CD81 3'UTR 0.38 TCGA-BR-8678-01 11 36467865 36467865 A - PRR5L Frame_Shift_Del p.I154Sfs*12 0.46 TCGA-BR-8678-01 11 397169 397169 C G PKP3 Missense_Mutation p.S223C 0.10 tolerated(0.07) benign(0.023) TCGA-BR-8678-01 11 55798075 55798075 T G OR5AS1 Missense_Mutation p.Y61D 0.11 deleterious(0) possibly_damaging(0.779) TCGA-BR-8678-01 11 55861192 55861192 T C OR8I2 Missense_Mutation p.S137P 0.11 deleterious(0.03) possibly_damaging(0.873) TCGA-BR-8678-01 11 56185107 56185107 G A OR5R1 Missense_Mutation p.A201V 0.07 tolerated(0.23) benign(0.036) TCGA-BR-8678-01 11 57581797 57581797 C T CTNND1 Missense_Mutation p.R885W 0.14 deleterious(0) probably_damaging(0.928) TCGA-BR-8678-01 11 5906083 5906083 C T OR52E4 Silent p.A187A 0.72 TCGA-BR-8678-01 11 60703766 60703768 AGG - TMEM132A In_Frame_Del p.E823del 0.68 TCGA-BR-8678-01 11 69934066 69934066 C T ANO1 Missense_Mutation p.A106V 0.67 tolerated(0.37) benign(0.001) TCGA-BR-8678-01 11 78380911 78380911 C T TENM4 Missense_Mutation p.R2160H 0.64 deleterious(0) probably_damaging(0.981) TCGA-BR-8678-01 11 86663299 86663299 C A FZD4 Missense_Mutation p.V167L 0.18 tolerated(0.4) benign(0.001) TCGA-BR-8678-01 12 109921443 109921443 G A UBE3B Silent p.R29R 0.59 TCGA-BR-8678-01 12 112667572 112667572 C T HECTD4 Missense_Mutation p.R2004H 0.18 probably_damaging(0.977) TCGA-BR-8678-01 12 133353343 133353343 C G GOLGA3 Splice_Site p.X1286_splice 0.58 TCGA-BR-8678-01 12 1992145 1992145 G A CACNA2D4 Missense_Mutation p.T458M 0.60 deleterious(0) probably_damaging(0.985) TCGA-BR-8678-01 12 29649590 29649590 G A OVCH1 Missense_Mutation p.R28C 0.07 tolerated(0.07) possibly_damaging(0.878) TCGA-BR-8678-01 12 4919260 4919260 C T KCNA6 Missense_Mutation p.P18L 0.31 tolerated_low_confidence(0.22) benign(0.003) TCGA-BR-8678-01 12 73012712 73012712 G T TRHDE Missense_Mutation p.R743I 0.17 tolerated(0.26) benign(0.355) TCGA-BR-8678-01 12 82746873 82746873 C T CCDC59 3'UTR 0.62 TCGA-BR-8678-01 12 9333627 9333627 G T PZP Missense_Mutation p.D597E 0.20 deleterious(0.01) probably_damaging(0.997) TCGA-BR-8678-01 13 36686248 36686248 G A DCLK1 Missense_Mutation p.R161W 0.11 deleterious(0) unknown(0) TCGA-BR-8678-01 13 42873858 42873859 - A AKAP11 Frame_Shift_Ins p.S328Kfs*7 0.11 TCGA-BR-8678-01 13 51417425 51417425 C T DLEU7 Missense_Mutation p.A120T 0.17 tolerated(0.19) benign(0.252) TCGA-BR-8678-01 13 67799641 67799641 C T PCDH9 Missense_Mutation p.D978N 0.63 deleterious(0.02) probably_damaging(0.951) TCGA-BR-8678-01 14 47120719 47120719 T A RPL10L Missense_Mutation p.K74I 0.24 deleterious(0) probably_damaging(0.956) TCGA-BR-8678-01 14 68238846 68238846 G T ZFYVE26 Missense_Mutation p.A1801E 0.73 tolerated(1) benign(0.011) TCGA-BR-8678-01 14 70925359 70925359 T A ADAM21 Silent p.A381A 0.04 TCGA-BR-8678-01 15 38632001 38632001 G A SPRED1 Missense_Mutation p.V163I 0.58 tolerated(0.19) benign(0.006) TCGA-BR-8678-01 15 42154034 42154034 C T SPTBN5 Missense_Mutation p.D2546N 0.42 benign(0.023) TCGA-BR-8678-01 15 96880938 96880938 G A NR2F2 3'UTR 0.79 TCGA-BR-8678-01 16 14042001 14042001 G C ERCC4 Missense_Mutation p.D850H 0.48 deleterious(0) probably_damaging(0.993) TCGA-BR-8678-01 16 14989701 14989701 A G NOMO1 3'UTR 0.14 TCGA-BR-8678-01 16 29997928 29997928 G T TAOK2 Missense_Mutation p.G779C 0.46 deleterious_low_confidence(0) benign(0.334) TCGA-BR-8678-01 16 618040 618040 C A NHLRC4 5'UTR 0.44 TCGA-BR-8678-01 16 618041 618041 A G NHLRC4 5'UTR 0.44 TCGA-BR-8678-01 16 74530507 74530507 C A GLG1 Missense_Mutation p.L270F 0.09 deleterious(0) probably_damaging(0.999) TCGA-BR-8678-01 16 85141652 85141652 C A FAM92B Missense_Mutation p.Q103H 0.55 tolerated(0.61) benign(0.048) TCGA-BR-8678-01 17 7230973 7230973 G A NEURL4 Silent p.L171L 0.22 TCGA-BR-8678-01 17 7579406 7579406 G C TP53 Nonsense_Mutation p.S94* 0.64 TCGA-BR-8678-01 18 14542978 14542978 C T POTEC Missense_Mutation p.M56I 0.11 deleterious_low_confidence(0.01) benign(0) TCGA-BR-8678-01 18 2760681 2760681 T C SMCHD1 Missense_Mutation p.Y1460H 0.28 tolerated(0.26) benign(0.143) TCGA-BR-8678-01 18 70526277 70526277 C G NETO1 Missense_Mutation p.D85H 0.45 tolerated(0.08) probably_damaging(0.961) TCGA-BR-8678-01 19 50172124 50172124 C T BCL2L12 Silent p.D173D 0.14 TCGA-BR-8678-01 19 56172483 56172483 C T U2AF2 Silent p.P138P 0.42 TCGA-BR-8678-01 19 57666682 57666682 G A DUXA Missense_Mutation p.A166V 0.39 tolerated(0.24) benign(0.019) TCGA-BR-8678-01 1 156351656 156351656 G A RHBG Missense_Mutation p.M300I 0.16 deleterious(0.01) probably_damaging(0.989) TCGA-BR-8678-01 1 159779344 159779344 G T FCRL6 Missense_Mutation p.A253S 0.17 tolerated(0.07) possibly_damaging(0.677) TCGA-BR-8678-01 1 190067205 190067205 C T BRINP3 Silent p.A748A 0.49 TCGA-BR-8678-01 1 220366601 220366601 A G RAB3GAP2 Silent p.I417I 0.23 TCGA-BR-8678-01 1 228003908 228003908 T C PRSS38 Missense_Mutation p.I89T 0.20 deleterious(0) probably_damaging(0.986) TCGA-BR-8678-01 1 245246924 245246924 G T EFCAB2 Missense_Mutation p.V103F 0.48 deleterious(0) probably_damaging(0.913) TCGA-BR-8678-01 1 245849034 245849034 G T KIF26B Nonsense_Mutation p.E917* 0.69 TCGA-BR-8678-01 1 248112270 248112285 TCTAATTGGAAACCTG - OR2L8 Frame_Shift_Del p.L38Pfs*2 0.12 TCGA-BR-8678-01 20 20243679 20243679 C A C20orf26 Missense_Mutation p.T803K 0.19 tolerated(0.08) benign(0.362) TCGA-BR-8678-01 20 23064978 23064978 C T CD93 Missense_Mutation p.E618K 0.34 tolerated(0.35) benign(0.196) TCGA-BR-8678-01 20 44003774 44003774 C T TP53TG5 Missense_Mutation p.V225M 0.07 deleterious(0.01) probably_damaging(0.982) TCGA-BR-8678-01 20 49366625 49366625 G A PARD6B Missense_Mutation p.R240H 0.23 tolerated(1) benign(0) TCGA-BR-8678-01 20 55942112 55942112 G A RAE1 Missense_Mutation p.E171K 0.18 deleterious(0) probably_damaging(0.981) TCGA-BR-8678-01 21 22881188 22881188 T A NCAM2 Silent p.G698G 0.32 TCGA-BR-8678-01 21 30357128 30357128 G C LTN1 Missense_Mutation p.A200G 0.35 deleterious(0.02) probably_damaging(0.999) TCGA-BR-8678-01 22 17073169 17073169 C T CCT8L2 Missense_Mutation p.R91Q 0.26 tolerated(0.22) possibly_damaging(0.509) TCGA-BR-8678-01 22 24323151 24323151 G A GSTT2 Missense_Mutation p.S42N 0.12 deleterious(0.04) benign(0.007) TCGA-BR-8678-01 22 42191783 42191783 C A MEI1 Silent p.T1237T 0.46 TCGA-BR-8678-01 22 51020991 51020991 C T CHKB Missense_Mutation p.V74M 0.27 deleterious(0.01) possibly_damaging(0.478) TCGA-BR-8678-01 2 100210469 100210469 C T AFF3 Missense_Mutation p.A577T 0.45 tolerated(0.23) benign(0.021) TCGA-BR-8678-01 2 109513576 109513576 G A EDAR Silent p.A378A 0.21 TCGA-BR-8678-01 2 112942907 112942907 C T FBLN7 Missense_Mutation p.T313M 0.38 deleterious(0) probably_damaging(1) TCGA-BR-8678-01 2 141031994 141031994 T C LRP1B Missense_Mutation p.N4381D 0.46 benign(0.292) TCGA-BR-8678-01 2 141072650 141072650 G C LRP1B Missense_Mutation p.T4220S 0.32 benign(0.292) TCGA-BR-8678-01 2 141473650 141473650 T A LRP1B Missense_Mutation p.H1972L 0.09 possibly_damaging(0.537) TCGA-BR-8678-01 2 141819648 141819648 T - LRP1B Frame_Shift_Del p.N403Ifs*17 0.28 TCGA-BR-8678-01 2 152425193 152425193 G A NEB Missense_Mutation p.T5858M 0.14 probably_damaging(1) TCGA-BR-8678-01 2 170338792 170338792 A - BBS5 Frame_Shift_Del p.I31Lfs*4 0.13 TCGA-BR-8678-01 2 170489839 170489839 T C PPIG Intron 0.27 TCGA-BR-8678-01 2 176946938 176946938 C T EVX2 Missense_Mutation p.A223T 0.16 tolerated(0.09) possibly_damaging(0.857) TCGA-BR-8678-01 2 17847705 17847705 A C SMC6 Missense_Mutation p.L1048R 0.39 deleterious(0) probably_damaging(0.998) TCGA-BR-8678-01 2 179464329 179464329 C A TTN Missense_Mutation p.V18767L 0.43 TCGA-BR-8678-01 2 179647717 179647717 C T TTN Silent p.P972P 0.46 TCGA-BR-8678-01 2 198257729 198257729 A C SF3B1 Missense_Mutation p.I1241M 0.17 deleterious(0) benign(0.128) TCGA-BR-8678-01 2 204111644 204111644 T G CYP20A1 Missense_Mutation p.S97A 0.32 tolerated(0.64) benign(0.005) TCGA-BR-8678-01 2 207655332 207655332 T C FASTKD2 Silent p.C645C 0.35 TCGA-BR-8678-01 2 234959729 234959729 C T SPP2 Missense_Mutation p.S67L 0.42 tolerated(0.09) benign(0.346) TCGA-BR-8678-01 2 33007732 33007732 C T TTC27 Nonsense_Mutation p.R607* 0.11 TCGA-BR-8678-01 2 40366566 40366566 G A SLC8A1 Silent p.F840F 0.39 TCGA-BR-8678-01 2 73677419 73677419 T A ALMS1 Missense_Mutation p.D1254E 0.11 benign(0.042) TCGA-BR-8678-01 3 121388080 121388080 C A GOLGB1 Missense_Mutation p.K3100N 0.17 probably_damaging(0.94) TCGA-BR-8678-01 3 121413488 121413488 G C GOLGB1 Missense_Mutation p.S1961C 0.37 probably_damaging(0.987) TCGA-BR-8678-01 3 128181963 128181963 C T DNAJB8 Silent p.A42A 0.42 TCGA-BR-8678-01 3 132416142 132416142 C A NPHP3 Nonsense_Mutation p.E684* 0.10 TCGA-BR-8678-01 3 18456611 18456611 G - SATB1 Frame_Shift_Del p.L211Ffs*5 0.15 TCGA-BR-8678-01 3 38618180 38618180 G C SCN5A Silent p.V1161V 0.21 TCGA-BR-8678-01 3 38748813 38748813 T G SCN10A Missense_Mutation p.K1448T 0.30 deleterious(0) probably_damaging(0.912) TCGA-BR-8678-01 3 41954327 41954327 C A ULK4 Nonsense_Mutation p.E290* 0.49 TCGA-BR-8678-01 3 8932127 8932127 G A RAD18 Missense_Mutation p.S444L 0.66 deleterious(0) probably_damaging(0.999) TCGA-BR-8678-01 4 153250850 153250850 T C FBXW7 Missense_Mutation p.K404E 0.80 deleterious(0.03) probably_damaging(0.998) TCGA-BR-8678-01 4 3949933 3949933 C T FAM86EP RNA 0.07 TCGA-BR-8678-01 4 68928785 68928785 T A TMPRSS11F Intron 0.67 TCGA-BR-8678-01 4 88011158 88011169 CTCCTTTGACAG - AFF1 In_Frame_Del p.P377_A380del 0.15 TCGA-BR-8678-01 5 129520330 129520330 G A CHSY3 Missense_Mutation p.V499I 0.75 tolerated(0.46) benign(0.28) TCGA-BR-8678-01 5 140554431 140554431 G A PCDHB7 Missense_Mutation p.R672Q 0.34 tolerated_low_confidence(0.08) benign(0.001) TCGA-BR-8678-01 5 159344848 159344848 C A ADRA1B Silent p.I312I 0.73 TCGA-BR-8678-01 5 16465699 16465699 C G ZNF622 Missense_Mutation p.D26H 0.35 deleterious(0) probably_damaging(0.999) TCGA-BR-8678-01 6 26033708 26033708 C T HIST1H2AB Missense_Mutation p.R30Q 0.50 deleterious_low_confidence(0) probably_damaging(0.915) TCGA-BR-8678-01 6 33260908 33260908 G T RGL2 Missense_Mutation p.A631D 0.11 tolerated(0.16) benign(0.18) TCGA-BR-8678-01 6 36454780 36454780 G A KCTD20 Missense_Mutation p.R363H 0.45 deleterious(0.03) probably_damaging(0.985) TCGA-BR-8678-01 6 4032190 4032190 G T PRPF4B Nonsense_Mutation p.E147* 0.56 TCGA-BR-8678-01 6 40998414 40998414 G T UNC5CL Silent p.S400S 0.08 TCGA-BR-8678-01 6 41774587 41774587 G A USP49 Silent p.A45A 0.11 TCGA-BR-8678-01 6 41904294 41904294 C T CCND3 Intron 0.41 TCGA-BR-8678-01 6 50740473 50740473 G A TFAP2D Missense_Mutation p.G419R 0.16 tolerated(0.06) possibly_damaging(0.895) TCGA-BR-8678-01 6 7565711 7565711 C T DSP Silent p.S299S 0.21 TCGA-BR-8678-01 6 87994325 87994325 C A GJB7 Missense_Mutation p.E102D 0.15 tolerated(0.24) possibly_damaging(0.906) TCGA-BR-8678-01 7 100680453 100680453 C T MUC17 Missense_Mutation p.S1919L 0.22 probably_damaging(0.992) TCGA-BR-8678-01 7 113519744 113519744 T G PPP1R3A Missense_Mutation p.K468T 0.25 tolerated(0.18) benign(0.025) TCGA-BR-8678-01 7 135291543 135291543 A G NUP205 Missense_Mutation p.R984G 0.53 deleterious(0.01) benign(0.093) TCGA-BR-8678-01 7 138824648 138824648 G T TTC26 Missense_Mutation p.A83S 0.15 deleterious(0.01) benign(0.116) TCGA-BR-8678-01 7 149418620 149418620 C T KRBA1 Missense_Mutation p.P154S 0.47 deleterious(0.04) probably_damaging(0.986) TCGA-BR-8678-01 7 21621622 21621622 T C DNAH11 Silent p.L565L 0.33 TCGA-BR-8678-01 7 21654888 21654888 C T DNAH11 Nonsense_Mutation p.R1337* 0.16 TCGA-BR-8678-01 7 74193734 74193734 C T NCF1 Missense_Mutation p.R121C 0.26 deleterious(0) probably_damaging(0.989) TCGA-BR-8678-01 8 19277976 19277976 C T CSGALNACT1 Missense_Mutation p.R336Q 0.09 deleterious(0) probably_damaging(0.999) TCGA-BR-8678-01 8 22380165 22380165 C T PPP3CC Intron 0.60 TCGA-BR-8678-01 8 41467367 41467367 G A AGPAT6 Nonsense_Mutation p.W143* 0.33 TCGA-BR-8678-01 8 67929969 67929969 G A PPP1R42 Missense_Mutation p.T5I 0.59 deleterious(0) probably_damaging(0.997) TCGA-BR-8678-01 8 86386597 86386597 A G CA2 Silent p.K132K 0.57 TCGA-BR-8678-01 9 109689674 109689674 G A ZNF462 Missense_Mutation p.E1161K 0.20 possibly_damaging(0.772) TCGA-BR-8678-01 9 124103412 124103412 C T STOM 3'UTR 0.19 TCGA-BR-8678-01 9 140347581 140347581 A G NSMF Missense_Mutation p.L325P 0.11 deleterious(0.01) probably_damaging(0.921) TCGA-BR-8678-01 9 35805937 35805937 C T NPR2 Missense_Mutation p.R720C 0.28 deleterious(0) probably_damaging(0.999) TCGA-BR-8678-01 9 7128217 7128217 C T KDM4C Missense_Mutation p.T921I 0.40 tolerated(0.08) probably_damaging(0.952) TCGA-BR-8678-01 9 84606105 84606105 C A SPATA31D1 Silent p.P240P 0.08 TCGA-BR-8678-01 9 98691121 98691121 G A ERCC6L2 Missense_Mutation p.V587I 0.15 tolerated(0.86) benign(0.042) TCGA-BR-8678-01 X 22291239 22291239 A C ZNF645 Missense_Mutation p.N44T 0.08 deleterious(0) probably_damaging(0.95) TCGA-BR-8678-01 X 2832782 2832782 C T ARSD Intron 0.13 TCGA-BR-8678-01 X 41069826 41069826 G A USP9X Missense_Mutation p.V1694M 0.94 deleterious(0.01) probably_damaging(0.996) TCGA-BR-8678-01 X 79286562 79286562 C A TBX22 Silent p.G505G 0.36 TCGA-BR-8678-01 X 90691445 90691445 G A PABPC5 Missense_Mutation p.R290Q 0.14 tolerated(1) benign(0.003) TCGA-BR-8679-01 10 1405717 1405717 C T ADARB2 Missense_Mutation p.A195T 0.24 tolerated(0.13) probably_damaging(0.996) TCGA-BR-8679-01 10 35300856 35300856 G A CUL2 Missense_Mutation p.R695W 0.70 deleterious(0) possibly_damaging(0.799) TCGA-BR-8679-01 10 48390215 48390215 G A RBP3 Silent p.Y221Y 0.16 TCGA-BR-8679-01 10 5808111 5808111 A C GDI2 Missense_Mutation p.F399C 0.12 deleterious(0) probably_damaging(0.995) TCGA-BR-8679-01 10 61819589 61819589 G A ANK3 Intron 0.23 TCGA-BR-8679-01 10 68138997 68138997 G A CTNNA3 Missense_Mutation p.H549Y 0.20 deleterious(0.01) unknown(0) TCGA-BR-8679-01 10 95441293 95441293 G C FRA10AC1 Nonsense_Mutation p.S244* 0.71 TCGA-BR-8679-01 11 106617342 106617342 A G GUCY1A2 Missense_Mutation p.F622L 0.40 tolerated_low_confidence(0.73) benign(0) TCGA-BR-8679-01 11 118997700 118997700 C T HINFP Nonsense_Mutation p.Q16* 0.27 TCGA-BR-8679-01 11 123894260 123894260 C T OR10G9 Missense_Mutation p.P181S 0.17 deleterious(0.01) probably_damaging(0.96) TCGA-BR-8679-01 11 30255460 30255460 G C FSHB 3'UTR 0.38 TCGA-BR-8679-01 11 64329769 64329769 C T SLC22A11 Missense_Mutation p.A228V 0.69 tolerated(0.16) benign(0.094) TCGA-BR-8679-01 11 65634395 65634395 G A EFEMP2 Silent p.T442T 0.19 TCGA-BR-8679-01 11 771346 771346 G A PDDC1 Silent p.G177G 0.48 TCGA-BR-8679-01 11 8009016 8009016 C T EIF3F Silent p.P39P 0.16 TCGA-BR-8679-01 11 82444684 82444684 C T FAM181B Missense_Mutation p.G30R 0.24 deleterious(0.03) probably_damaging(0.991) TCGA-BR-8679-01 12 117157596 117157596 C T C12orf49 Missense_Mutation p.C169Y 0.33 deleterious(0) probably_damaging(0.983) TCGA-BR-8679-01 12 118598020 118598020 C T TAOK3 Silent p.Q761Q 0.10 TCGA-BR-8679-01 12 120613607 120613607 C T GCN1L1 Silent p.Q328Q 0.19 TCGA-BR-8679-01 12 122684793 122684793 C T LRRC43 Silent p.Y469Y 0.18 TCGA-BR-8679-01 12 132403121 132403121 C T ULK1 Silent p.L802L 0.17 TCGA-BR-8679-01 12 25398285 25398285 C T KRAS Missense_Mutation p.G12S 0.06 deleterious(0.03) possibly_damaging(0.644) TCGA-BR-8679-01 12 3931156 3931156 T C PARP11 Missense_Mutation p.H144R 0.41 tolerated(0.59) benign(0.004) TCGA-BR-8679-01 12 40077228 40077228 A G C12orf40 Missense_Mutation p.N410D 0.19 deleterious(0.03) possibly_damaging(0.493) TCGA-BR-8679-01 12 57324037 57324037 C T SDR9C7 Missense_Mutation p.G178D 0.18 deleterious(0) probably_damaging(1) TCGA-BR-8679-01 12 72036243 72036243 C T ZFC3H1 Missense_Mutation p.D534N 0.54 deleterious(0) probably_damaging(0.992) TCGA-BR-8679-01 12 95502125 95502125 C T FGD6 Missense_Mutation p.R1088Q 0.34 deleterious(0.01) probably_damaging(0.966) TCGA-BR-8679-01 13 23905259 23905259 A G SACS Silent p.S4252S 0.27 TCGA-BR-8679-01 13 29855958 29855958 G A MTUS2 Missense_Mutation p.R931H 0.12 deleterious(0.03) probably_damaging(0.999) TCGA-BR-8679-01 13 43175104 43175104 C T TNFSF11 Silent p.T173T 0.53 TCGA-BR-8679-01 13 43798201 43798201 C A ENOX1 Missense_Mutation p.Q596H 0.28 deleterious(0) benign(0.359) TCGA-BR-8679-01 14 102349794 102349794 A T PPP2R5C Missense_Mutation p.D206V 0.24 deleterious(0) probably_damaging(1) TCGA-BR-8679-01 14 24033828 24033828 C A AP1G2 Silent p.A288A 0.13 TCGA-BR-8679-01 14 32561145 32561149 GAGAA - ARHGAP5 Frame_Shift_Del p.K425Efs*35 0.51 TCGA-BR-8679-01 14 88904415 88904415 G T SPATA7 Missense_Mutation p.E483D 0.64 tolerated(0.11) possibly_damaging(0.627) TCGA-BR-8679-01 14 91700984 91700984 C T GPR68 Silent p.A137A 0.68 TCGA-BR-8679-01 14 92949146 92949146 G A SLC24A4 Missense_Mutation p.A460T 0.18 deleterious(0) benign(0.407) TCGA-BR-8679-01 15 100657064 100657064 C T ADAMTS17 Missense_Mutation p.V626M 0.15 deleterious(0.03) benign(0.02) TCGA-BR-8679-01 15 100695514 100695514 T G ADAMTS17 Missense_Mutation p.N398T 0.33 deleterious(0) benign(0.209) TCGA-BR-8679-01 15 34072507 34072507 C T RYR3 Missense_Mutation p.S3078L 0.75 probably_damaging(0.972) TCGA-BR-8679-01 15 48414329 48414329 T C SLC24A5 Intron 0.54 TCGA-BR-8679-01 15 74315474 74315474 C T PML Missense_Mutation p.A303V 0.62 tolerated(0.09) benign(0.087) TCGA-BR-8679-01 15 89744916 89744916 G A ABHD2 3'UTR 0.13 TCGA-BR-8679-01 16 18827647 18827647 G A SMG1 Missense_Mutation p.H3427Y 0.23 tolerated(0.71) probably_damaging(0.968) TCGA-BR-8679-01 16 20497994 20497994 G A ACSM2A Silent p.A576A 0.60 TCGA-BR-8679-01 16 24922747 24922747 G A SLC5A11 Missense_Mutation p.A641T 0.64 tolerated(0.39) benign(0.001) TCGA-BR-8679-01 16 3283833 3283833 C T ZNF200 5'UTR 0.68 TCGA-BR-8679-01 16 426761 426761 G A TMEM8A Silent p.C229C 0.08 TCGA-BR-8679-01 16 69727007 69727007 A C NFAT5 Missense_Mutation p.Q1093H 0.29 benign(0.343) TCGA-BR-8679-01 16 89337312 89337312 G A ANKRD11 Silent p.D2573D 0.09 TCGA-BR-8679-01 17 27024707 27024707 C G SUPT6H Missense_Mutation p.L1427V 0.36 deleterious(0.01) benign(0.04) TCGA-BR-8679-01 17 28964385 28964385 G T LRRC37BP1 RNA 0.27 TCGA-BR-8679-01 17 58701061 58701061 A G PPM1D Missense_Mutation p.K218E 0.15 deleterious(0) possibly_damaging(0.895) TCGA-BR-8679-01 17 62018998 62018998 G A SCN4A Silent p.S1548S 0.38 TCGA-BR-8679-01 17 7579381 7579381 G - TP53 Frame_Shift_Del p.Y103Tfs*20 0.32 TCGA-BR-8679-01 18 12884110 12884110 C G PTPN2 Missense_Mutation p.E11Q 0.17 tolerated(0.23) benign(0.021) TCGA-BR-8679-01 18 14543140 14543140 C T POTEC Silent p.V2V 0.09 TCGA-BR-8679-01 18 2891281 2891281 C T EMILIN2 Missense_Mutation p.R386W 0.19 deleterious(0.01) possibly_damaging(0.724) TCGA-BR-8679-01 18 5397280 5397280 G A EPB41L3 Missense_Mutation p.S873L 0.23 tolerated(0.48) benign(0) TCGA-BR-8679-01 18 59483133 59483133 G A RNF152 Silent p.H188H 0.17 TCGA-BR-8679-01 18 72997563 72997563 G A TSHZ1 Silent p.A22A 0.11 TCGA-BR-8679-01 19 1231232 1231232 C G C19orf26 Missense_Mutation p.S341T 0.12 deleterious(0) probably_damaging(0.997) TCGA-BR-8679-01 19 17068679 17068679 G A CPAMD8 Missense_Mutation p.H801Y 0.23 deleterious(0.04) possibly_damaging(0.709) TCGA-BR-8679-01 19 19359647 19359647 G A NCAN Missense_Mutation p.R1259Q 0.10 tolerated(0.07) benign(0.083) TCGA-BR-8679-01 19 36051409 36051409 G A ATP4A Missense_Mutation p.R215C 0.57 deleterious(0) probably_damaging(0.999) TCGA-BR-8679-01 19 3784173 3784173 G A MATK Missense_Mutation p.A105V 0.09 tolerated(0.44) benign(0.04) TCGA-BR-8679-01 19 41712326 41712326 A G CYP2S1 Missense_Mutation p.N483S 0.63 tolerated(0.24) probably_damaging(0.94) TCGA-BR-8679-01 19 43233295 43233295 G T PSG3 Missense_Mutation p.S408Y 0.13 tolerated(0.88) benign(0.021) TCGA-BR-8679-01 19 47933453 47933453 C T SLC8A2 Missense_Mutation p.G887S 0.11 deleterious(0) probably_damaging(1) TCGA-BR-8679-01 1 11140947 11140947 G A EXOSC10 Missense_Mutation p.T487M 0.35 deleterious(0.01) benign(0.192) TCGA-BR-8679-01 1 115828584 115828584 C T NGF 3'UTR 0.21 TCGA-BR-8679-01 1 12726597 12726597 C T AADACL4 Missense_Mutation p.R359C 0.19 tolerated(0.05) possibly_damaging(0.597) TCGA-BR-8679-01 1 145438717 145438718 - G TXNIP 5'UTR 0.26 TCGA-BR-8679-01 1 150479619 150479619 A G TARS2 3'UTR 0.30 TCGA-BR-8679-01 1 152059398 152059398 G A TCHHL1 Nonsense_Mutation p.Q254* 0.54 TCGA-BR-8679-01 1 155584443 155584443 A G MSTO1 3'UTR 0.19 TCGA-BR-8679-01 1 15794033 15794033 G A CELA2A Silent p.S264S 0.04 TCGA-BR-8679-01 1 158687131 158687131 A T OR6K3 Missense_Mutation p.L259M 0.23 deleterious(0.01) probably_damaging(0.996) TCGA-BR-8679-01 1 158746588 158746588 C T OR6N2 Missense_Mutation p.V280I 0.09 tolerated(0.14) benign(0.202) TCGA-BR-8679-01 1 158746952 158746952 A G OR6N2 Silent p.S158S 0.10 TCGA-BR-8679-01 1 158747263 158747263 G A OR6N2 Silent p.L55L 0.16 TCGA-BR-8679-01 1 1635782 1635782 C A CDK11A Silent p.G522G 0.33 TCGA-BR-8679-01 1 193149667 193149667 T C B3GALT2 Silent p.V342V 0.11 TCGA-BR-8679-01 1 196953137 196953137 A C CFHR5 Silent p.S100S 0.25 TCGA-BR-8679-01 1 20234063 20234063 G A OTUD3 Missense_Mutation p.V341I 0.40 deleterious(0.01) benign(0.119) TCGA-BR-8679-01 1 224804737 224804737 G A CNIH3 5'UTR 0.16 TCGA-BR-8679-01 1 240555839 240555839 T G FMN2 Missense_Mutation p.N1629K 0.12 benign(0.127) TCGA-BR-8679-01 1 32196483 32196483 C T BAI2 Missense_Mutation p.R1433H 0.26 tolerated(0.05) possibly_damaging(0.655) TCGA-BR-8679-01 1 46509408 46509410 GTT - PIK3R3 In_Frame_Del p.N441del 0.36 TCGA-BR-8679-01 1 8074343 8074343 G A ERRFI1 Missense_Mutation p.H106Y 0.39 tolerated(1) benign(0) TCGA-BR-8679-01 1 89845996 89845996 G A GBP6 Missense_Mutation p.R226H 0.29 tolerated(0.37) benign(0.001) TCGA-BR-8679-01 20 1277819 1277819 T A SNPH Missense_Mutation p.D27E 0.26 tolerated(0.11) benign(0.007) TCGA-BR-8679-01 20 16359862 16359862 C T KIF16B Missense_Mutation p.E929K 0.16 deleterious_low_confidence(0) possibly_damaging(0.823) TCGA-BR-8679-01 20 23472384 23472384 A G CST8 Missense_Mutation p.N27S 0.03 tolerated(0.08) benign(0.099) TCGA-BR-8679-01 20 31889103 31889103 C T BPIFB1 Missense_Mutation p.T271I 0.04 deleterious(0.03) benign(0.1) TCGA-BR-8679-01 20 3262288 3262288 T A C20orf194 Nonsense_Mutation p.R871* 0.12 TCGA-BR-8679-01 20 35207182 35207182 C T TGIF2-C20orf24 Missense_Mutation p.S2L 0.19 deleterious_low_confidence(0) benign(0.024) TCGA-BR-8679-01 20 37357184 37357184 G A SLC32A1 Missense_Mutation p.V494I 0.13 tolerated(1) benign(0.025) TCGA-BR-8679-01 20 3846340 3846340 C G MAVS Missense_Mutation p.A390G 0.15 tolerated(0.24) benign(0.011) TCGA-BR-8679-01 20 55982810 55982810 G A RBM38 Missense_Mutation p.A210T 0.13 tolerated(0.23) benign(0.079) TCGA-BR-8679-01 20 61468510 61468510 G C COL9A3 Missense_Mutation p.G560A 0.29 deleterious(0) probably_damaging(0.999) TCGA-BR-8679-01 22 45937242 45937242 G A FBLN1 Silent p.T352T 0.15 TCGA-BR-8679-01 22 50927478 50927478 G A MIOX Missense_Mutation p.V140I 0.59 deleterious(0) possibly_damaging(0.866) TCGA-BR-8679-01 2 137928482 137928482 T C THSD7B Missense_Mutation p.L566P 0.36 tolerated(0.16) possibly_damaging(0.883) TCGA-BR-8679-01 2 155295200 155295200 C A GALNT13 Missense_Mutation p.H498N 0.07 tolerated(0.18) benign(0.006) TCGA-BR-8679-01 2 167760210 167760210 C T XIRP2 Missense_Mutation p.S73L 0.20 benign(0.006) TCGA-BR-8679-01 2 179247234 179247234 A C OSBPL6 Missense_Mutation p.I566L 0.11 tolerated(0.43) benign(0.059) TCGA-BR-8679-01 2 179585348 179585348 A G TTN Missense_Mutation p.L7714P 0.29 TCGA-BR-8679-01 2 18766140 18766140 C T NT5C1B Silent p.A181A 0.17 TCGA-BR-8679-01 2 212522548 212522548 T G ERBB4 Missense_Mutation p.N626T 0.16 tolerated(1) benign(0) TCGA-BR-8679-01 2 216946474 216946474 G T PECR 5'UTR 0.09 TCGA-BR-8679-01 2 219250136 219250136 C G SLC11A1 Intron 0.20 TCGA-BR-8679-01 2 229890648 229890648 T A PID1 Missense_Mutation p.K149N 0.17 deleterious(0.02) benign(0.229) TCGA-BR-8679-01 2 27427688 27427688 G A SLC5A6 Silent p.L282L 0.17 TCGA-BR-8679-01 2 32670603 32670603 T C BIRC6 Missense_Mutation p.Y1451H 0.51 probably_damaging(0.994) TCGA-BR-8679-01 2 33810313 33810313 G A FAM98A Missense_Mutation p.R363C 0.38 deleterious(0.03) unknown(0) TCGA-BR-8679-01 2 74460534 74460534 G T SLC4A5 Missense_Mutation p.L864M 0.13 deleterious(0) probably_damaging(1) TCGA-BR-8679-01 2 88405935 88405935 C T SMYD1 Missense_Mutation p.S358L 0.13 tolerated(0.21) benign(0.051) TCGA-BR-8679-01 3 126224579 126224579 C T UROC1 Missense_Mutation p.A260T 0.19 tolerated(0.07) benign(0.233) TCGA-BR-8679-01 3 12778267 12778267 G A TMEM40 Silent p.Y180Y 0.23 TCGA-BR-8679-01 3 14770029 14770029 C T C3orf20 Missense_Mutation p.R592W 0.31 tolerated(0.25) benign(0.134) TCGA-BR-8679-01 3 154013119 154013119 A T DHX36 Nonsense_Mutation p.L520* 0.33 TCGA-BR-8679-01 3 178560469 178560469 A T KCNMB2 Missense_Mutation p.N151I 0.14 deleterious(0) possibly_damaging(0.739) TCGA-BR-8679-01 3 39136357 39136357 G A WDR48 3'UTR 0.24 TCGA-BR-8679-01 3 43408442 43408442 G C ANO10 Missense_Mutation p.L647V 0.31 tolerated_low_confidence(0.16) benign(0.006) TCGA-BR-8679-01 3 77657047 77657047 G A ROBO2 Missense_Mutation p.V1095I 0.49 tolerated(0.58) benign(0.097) TCGA-BR-8679-01 4 118005573 118005573 T C TRAM1L1 Missense_Mutation p.D326G 0.15 tolerated(0.2) benign(0.033) TCGA-BR-8679-01 4 126240675 126240675 G A FAT4 Missense_Mutation p.E1037K 0.16 benign(0.217) TCGA-BR-8679-01 4 156277001 156277001 G A MAP9 Missense_Mutation p.S386F 0.65 deleterious(0.01) probably_damaging(0.91) TCGA-BR-8679-01 4 44720403 44720403 T C GNPDA2 Missense_Mutation p.K50R 0.46 tolerated_low_confidence(0.28) benign(0.003) TCGA-BR-8679-01 4 9783718 9783718 C T DRD5 Missense_Mutation p.A22V 0.19 tolerated_low_confidence(0.17) benign(0.004) TCGA-BR-8679-01 5 101597686 101597686 C T SLCO4C1 Silent p.G317G 0.14 TCGA-BR-8679-01 5 136324212 136324212 T A SPOCK1 Missense_Mutation p.K276M 0.38 deleterious(0) probably_damaging(1) TCGA-BR-8679-01 5 140481830 140481830 G A PCDHB3 Missense_Mutation p.A533T 0.18 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-BR-8679-01 5 140558215 140558215 G A PCDHB8 Silent p.A200A 0.08 TCGA-BR-8679-01 5 140774731 140774731 G T PCDHGA8 Missense_Mutation p.G784V 0.23 deleterious_low_confidence(0) benign(0.008) TCGA-BR-8679-01 5 148206648 148206648 C A ADRB2 Missense_Mutation p.A85E 0.22 deleterious(0) possibly_damaging(0.766) TCGA-BR-8679-01 5 149677830 149677830 G T ARSI Silent p.I219I 0.40 TCGA-BR-8679-01 5 157073789 157073789 G A SOX30 Nonsense_Mutation p.R415* 0.25 TCGA-BR-8679-01 5 2748985 2748985 C T IRX2 Silent p.P279P 0.39 TCGA-BR-8679-01 5 40692448 40692465 GAAACACTGAACTTATCA - PTGER4 In_Frame_Del p.T480_E485del 0.20 TCGA-BR-8679-01 5 43609403 43609403 T G NNT Missense_Mutation p.F36V 0.07 tolerated(0.09) benign(0.046) TCGA-BR-8679-01 5 52145263 52145263 G A ITGA1 Silent p.P42P 0.30 TCGA-BR-8679-01 5 5237162 5237162 A C ADAMTS16 Missense_Mutation p.T702P 0.19 deleterious(0.01) probably_damaging(0.996) TCGA-BR-8679-01 6 117632202 117632202 G A ROS1 Missense_Mutation p.R2072W 0.14 deleterious(0) possibly_damaging(0.606) TCGA-BR-8679-01 6 137525611 137525611 C T IFNGR1 Missense_Mutation p.R135K 0.19 tolerated(0.33) benign(0.008) TCGA-BR-8679-01 6 26021060 26021060 G T HIST1H3A Missense_Mutation p.A115S 0.52 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-BR-8679-01 6 26388520 26388520 C T BTN2A2 Missense_Mutation p.P241L 0.13 deleterious(0) probably_damaging(0.992) TCGA-BR-8679-01 6 26413839 26413839 C T BTN3A1 Silent p.D487D 0.11 TCGA-BR-8679-01 6 27100278 27100278 G A HIST1H2BJ Silent p.Y84Y 0.18 TCGA-BR-8679-01 6 27777844 27777844 C G HIST1H3H 5'UTR 0.57 TCGA-BR-8679-01 6 29795926 29795926 G A HLA-G Missense_Mutation p.R59Q 0.25 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-BR-8679-01 6 31611880 31611880 C G BAG6 Silent p.G519G 0.10 TCGA-BR-8679-01 6 32065659 32065659 C T TNXB Missense_Mutation p.R106H 0.12 probably_damaging(0.984) TCGA-BR-8679-01 6 38816548 38816548 G A DNAH8 Missense_Mutation p.G1507S 0.40 possibly_damaging(0.856) TCGA-BR-8679-01 6 96652177 96652177 G A FUT9 3'UTR 0.31 TCGA-BR-8679-01 6 97052643 97052643 C T FHL5 Silent p.D59D 0.14 TCGA-BR-8679-01 7 113522369 113522369 T G PPP1R3A Missense_Mutation p.E263D 0.30 deleterious(0) probably_damaging(0.948) TCGA-BR-8679-01 7 136587945 136587945 T G CHRM2 Intron 0.21 TCGA-BR-8679-01 7 136938369 136938369 T G PTN Missense_Mutation p.K44T 0.23 tolerated(0.29) possibly_damaging(0.684) TCGA-BR-8679-01 7 141478666 141478666 C T TAS2R4 Silent p.S126S 0.10 TCGA-BR-8679-01 7 14378334 14378334 C T DGKB Missense_Mutation p.C644Y 0.18 deleterious(0) probably_damaging(0.997) TCGA-BR-8679-01 7 149485454 149485454 C T SSPO RNA 0.26 TCGA-BR-8679-01 7 154585896 154585896 C T DPP6 Missense_Mutation p.T415M 0.31 deleterious(0) probably_damaging(0.972) TCGA-BR-8679-01 7 156468398 156468398 A C RNF32 Missense_Mutation p.E231D 0.29 tolerated(0.05) possibly_damaging(0.633) TCGA-BR-8679-01 7 2962952 2962952 C T CARD11 Silent p.S652S 0.28 TCGA-BR-8679-01 7 32598846 32598846 A C AVL9 Missense_Mutation p.S329R 0.37 deleterious(0.03) possibly_damaging(0.809) TCGA-BR-8679-01 7 33376157 33376157 G T BBS9 Missense_Mutation p.R374L 0.15 deleterious(0) probably_damaging(0.997) TCGA-BR-8679-01 7 38299586 38299586 G A TRGC1 3'UTR 0.20 TCGA-BR-8679-01 7 43918102 43918102 G A URGCP Silent p.S320S 0.36 TCGA-BR-8679-01 7 73466278 73466278 C T ELN Missense_Mutation p.A305V 0.04 unknown(0) TCGA-BR-8679-01 7 73753054 73753054 C T CLIP2 Missense_Mutation p.P133L 0.17 deleterious(0.02) benign(0.311) TCGA-BR-8679-01 7 80108223 80108223 C T GNAT3 Missense_Mutation p.R132K 0.06 tolerated(0.85) benign(0.001) TCGA-BR-8679-01 7 81346652 81346652 T A HGF Missense_Mutation p.K434M 0.16 tolerated(0.1) probably_damaging(0.973) TCGA-BR-8679-01 7 87329803 87329803 G A RUNDC3B Missense_Mutation p.R119Q 0.37 deleterious(0.05) possibly_damaging(0.464) TCGA-BR-8679-01 7 92760776 92760776 T A SAMD9L Silent p.T1503T 0.34 TCGA-BR-8679-01 7 99909534 99909534 C T SPDYE3 Nonsense_Mutation p.R236* 0.32 TCGA-BR-8679-01 8 101195650 101195650 C T SPAG1 Silent p.Y158Y 0.14 TCGA-BR-8679-01 8 113353899 113353899 A G CSMD3 Silent p.F2153F 0.17 TCGA-BR-8679-01 8 15998320 15998320 A T MSR1 Intron 0.51 TCGA-BR-8679-01 8 21837641 21837641 T G XPO7 Missense_Mutation p.F295C 0.44 deleterious(0) probably_damaging(0.998) TCGA-BR-8679-01 8 21965689 21965689 G A NUDT18 Missense_Mutation p.R111W 0.45 deleterious(0) benign(0.152) TCGA-BR-8679-01 8 22105684 22105684 G A POLR3D Missense_Mutation p.V127M 0.43 tolerated(0.15) benign(0.067) TCGA-BR-8679-01 8 24772237 24772237 C T NEFM Missense_Mutation p.R311C 0.11 deleterious(0.01) unknown(0) TCGA-BR-8679-01 8 63942754 63942754 A T GGH Missense_Mutation p.Y83N 0.10 deleterious(0) probably_damaging(0.999) TCGA-BR-8679-01 8 63978606 63978606 G A TTPA Silent p.L137L 0.23 TCGA-BR-8679-01 8 69728144 69728144 G A C8orf34 Missense_Mutation p.V525I 0.30 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-BR-8679-01 8 75263617 75263617 G T GDAP1 Nonsense_Mutation p.E76* 0.16 TCGA-BR-8679-01 8 77763887 77763887 C A ZFHX4 Missense_Mutation p.S1577Y 0.11 possibly_damaging(0.781) TCGA-BR-8679-01 8 9622234 9622234 T C TNKS Silent p.S1127S 0.10 TCGA-BR-8679-01 8 97156922 97156922 C T GDF6 Missense_Mutation p.G413S 0.22 tolerated(0.35) benign(0.106) TCGA-BR-8679-01 9 100616626 100616626 C T FOXE1 Missense_Mutation p.R144C 0.24 deleterious(0) probably_damaging(0.997) TCGA-BR-8679-01 9 101907101 101907101 T C TGFBR1 Missense_Mutation p.L354P 0.13 deleterious(0) probably_damaging(1) TCGA-BR-8679-01 9 113194198 113194199 CA - SVEP1 Frame_Shift_Del p.A1784Rfs*6 0.43 TCGA-BR-8679-01 9 120475713 120475713 A G TLR4 Missense_Mutation p.Q436R 0.66 tolerated(0.6) benign(0.016) TCGA-BR-8679-01 9 13119520 13119520 G A MPDZ Missense_Mutation p.A1787V 0.06 tolerated(0.1) benign(0.111) TCGA-BR-8679-01 9 43629308 43629308 G A SPATA31A6 Missense_Mutation p.R68W 0.06 tolerated(0.16) benign(0) TCGA-BR-8679-01 9 80851395 80851395 G A CEP78 Silent p.L43L 0.25 TCGA-BR-8679-01 X 101823347 101823347 C T NXF4 RNA 0.19 TCGA-BR-8679-01 X 120182302 120182302 T G GLUD2 Missense_Mutation p.V255G 0.04 deleterious(0.02) benign(0.156) TCGA-BR-8679-01 X 137717619 137717619 T C FGF13 Silent p.K210K 0.55 TCGA-BR-8679-01 X 147011748 147011748 T G FMR1 Silent p.A205A 0.25 TCGA-BR-8679-01 X 3235214 3235214 C T MXRA5 Missense_Mutation p.A2170T 0.38 deleterious(0.02) possibly_damaging(0.653) TCGA-BR-8679-01 X 54328235 54328235 C T WNK3 Missense_Mutation p.E383K 0.21 deleterious(0.04) probably_damaging(0.985) TCGA-BR-8679-01 X 5821835 5821835 T G NLGN4X Missense_Mutation p.K295T 0.33 tolerated(0.05) probably_damaging(0.986) TCGA-BR-8679-01 X 71864212 71864212 C T PHKA1 Missense_Mutation p.G487R 0.12 deleterious(0) possibly_damaging(0.85) TCGA-BR-8680-01 10 100008665 100008665 T G LOXL4 3'UTR 0.32 TCGA-BR-8680-01 10 100190928 100190928 A C HPS1 Missense_Mutation p.F210V 0.22 deleterious(0) possibly_damaging(0.492) TCGA-BR-8680-01 10 101373638 101373638 C T SLC25A28 Missense_Mutation p.R112H 0.24 deleterious(0.05) possibly_damaging(0.806) TCGA-BR-8680-01 10 101716155 101716155 G T DNMBP Missense_Mutation p.S359Y 0.39 tolerated_low_confidence(0.76) possibly_damaging(0.45) TCGA-BR-8680-01 10 101802118 101802118 G T CPN1 3'UTR 0.35 TCGA-BR-8680-01 10 102676415 102676415 G A FAM178A Silent p.R91R 0.23 TCGA-BR-8680-01 10 102698458 102698458 G T FAM178A Missense_Mutation p.E873D 0.27 tolerated(0.08) benign(0.012) TCGA-BR-8680-01 10 103294454 103294454 G A BTRC Silent p.T378T 0.08 TCGA-BR-8680-01 10 103340084 103340084 G A POLL Silent p.V428V 0.40 TCGA-BR-8680-01 10 103343188 103343188 G A POLL Intron 0.36 TCGA-BR-8680-01 10 103789309 103789309 C T C10orf76 Intron 0.28 TCGA-BR-8680-01 10 103826086 103826086 C T HPS6 Silent p.F285F 0.39 TCGA-BR-8680-01 10 104164427 104164427 G T PSD Missense_Mutation p.F871L 0.32 deleterious(0.03) benign(0.006) TCGA-BR-8680-01 10 104268934 104268934 G T SUFU Missense_Mutation p.G64V 0.37 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 10 104569765 104569765 C T WBP1L Silent p.I103I 0.25 TCGA-BR-8680-01 10 104660508 104660508 T C AS3MT 3'UTR 0.26 TCGA-BR-8680-01 10 104852955 104852955 C T NT5C2 Missense_Mutation p.R367Q 0.27 deleterious(0.04) possibly_damaging(0.746) TCGA-BR-8680-01 10 104854130 104854130 C T NT5C2 Missense_Mutation p.G299D 0.16 deleterious(0) possibly_damaging(0.775) TCGA-BR-8680-01 10 105172967 105172967 G A PDCD11 Missense_Mutation p.R358Q 0.31 tolerated(0.77) benign(0.002) TCGA-BR-8680-01 10 105198554 105198554 T C PDCD11 Silent p.G1338G 0.30 TCGA-BR-8680-01 10 105205159 105205159 T C PDCD11 Silent p.H1823H 0.07 TCGA-BR-8680-01 10 105642357 105642357 A C OBFC1 3'UTR 0.27 TCGA-BR-8680-01 10 1058589 1058589 G A GTPBP4 Missense_Mutation p.R510Q 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8680-01 10 105900722 105900722 T C WDR96 Missense_Mutation p.T1437A 0.26 deleterious(0.02) benign(0.209) TCGA-BR-8680-01 10 105921768 105921768 T C WDR96 Missense_Mutation p.D1122G 0.33 deleterious(0) probably_damaging(0.986) TCGA-BR-8680-01 10 105944863 105944863 A G WDR96 Silent p.H684H 0.36 TCGA-BR-8680-01 10 106128305 106128305 C T CCDC147 Missense_Mutation p.A306V 0.23 tolerated(0.16) benign(0.005) TCGA-BR-8680-01 10 106160654 106160654 G T CCDC147 Nonsense_Mutation p.E678* 0.43 TCGA-BR-8680-01 10 106209871 106209871 G T CCDC147 Nonsense_Mutation p.E807* 0.32 TCGA-BR-8680-01 10 106737154 106737154 C T SORCS3 Missense_Mutation p.A286V 0.26 deleterious(0) possibly_damaging(0.577) TCGA-BR-8680-01 10 106737155 106737155 G A SORCS3 Silent p.A286A 0.30 TCGA-BR-8680-01 10 106899200 106899200 G T SORCS3 Nonsense_Mutation p.E420* 0.28 TCGA-BR-8680-01 10 112058499 112058499 G A SMNDC1 Missense_Mutation p.T57M 0.41 tolerated(0.1) benign(0.212) TCGA-BR-8680-01 10 1126003 1126003 G A WDR37 Silent p.A96A 0.31 TCGA-BR-8680-01 10 112635813 112635813 A G PDCD4 Missense_Mutation p.N10D 0.07 deleterious_low_confidence(0.05) benign(0.001) TCGA-BR-8680-01 10 113913301 113913301 A G GPAM 3'UTR 0.28 TCGA-BR-8680-01 10 114053507 114053507 C A TECTB Missense_Mutation p.F165L 0.26 deleterious(0.03) possibly_damaging(0.798) TCGA-BR-8680-01 10 114186031 114186031 G A ACSL5 Missense_Mutation p.V641M 0.29 deleterious(0) probably_damaging(0.955) TCGA-BR-8680-01 10 114186112 114186112 A C ACSL5 Missense_Mutation p.N668H 0.39 deleterious(0.02) probably_damaging(0.986) TCGA-BR-8680-01 10 1142234 1142234 G A WDR37 Intron 0.29 TCGA-BR-8680-01 10 114224397 114224397 G A VTI1A Missense_Mutation p.G82E 0.38 tolerated(0.65) benign(0.01) TCGA-BR-8680-01 10 114925333 114925333 C T TCF7L2 Missense_Mutation p.R471C 0.30 deleterious(0) probably_damaging(0.944) TCGA-BR-8680-01 10 11504533 11504533 A G USP6NL Silent p.S815S 0.27 TCGA-BR-8680-01 10 115380377 115380377 C A NRAP Nonsense_Mutation p.E954* 0.29 TCGA-BR-8680-01 10 115661480 115661480 C T NHLRC2 Nonsense_Mutation p.R399* 0.33 TCGA-BR-8680-01 10 115662299 115662299 A G NHLRC2 Missense_Mutation p.T481A 0.33 tolerated(1) benign(0.001) TCGA-BR-8680-01 10 115887281 115887281 T G C10orf118 Missense_Mutation p.K778Q 0.34 deleterious(0) probably_damaging(0.998) TCGA-BR-8680-01 10 116621341 116621341 A G FAM160B1 3'UTR 0.28 TCGA-BR-8680-01 10 116734914 116734914 A G TRUB1 Missense_Mutation p.T276A 0.11 tolerated(0.33) benign(0.244) TCGA-BR-8680-01 10 117024726 117024726 T G ATRNL1 Missense_Mutation p.F582V 0.28 deleterious(0) probably_damaging(0.942) TCGA-BR-8680-01 10 117849401 117849401 C T GFRA1 Missense_Mutation p.D350N 0.31 tolerated(0.06) benign(0.335) TCGA-BR-8680-01 10 118236226 118236226 A G PNLIPRP3 Missense_Mutation p.N412S 0.35 tolerated(0.52) benign(0.27) TCGA-BR-8680-01 10 118306875 118306875 G T PNLIP Missense_Mutation p.R39I 0.35 deleterious(0) probably_damaging(0.995) TCGA-BR-8680-01 10 118354250 118354250 C T PNLIPRP1 Silent p.F113F 0.35 TCGA-BR-8680-01 10 118383524 118383524 C T PNLIPRP2 Nonsense_Mutation p.R40* 0.37 TCGA-BR-8680-01 10 118460485 118460485 T G HSPA12A Missense_Mutation p.E137A 0.31 deleterious(0.02) benign(0.419) TCGA-BR-8680-01 10 118661437 118661437 G A KIAA1598 Silent p.S504S 0.34 TCGA-BR-8680-01 10 118891717 118891717 G A VAX1 3'Flank 0.27 TCGA-BR-8680-01 10 118960684 118960684 A C KCNK18 Missense_Mutation p.K80Q 0.33 deleterious(0.04) benign(0.071) TCGA-BR-8680-01 10 119014811 119014811 C T SLC18A2 Missense_Mutation p.L242F 0.24 deleterious(0.02) benign(0.163) TCGA-BR-8680-01 10 119042726 119042726 A G PDZD8 3'UTR 0.25 TCGA-BR-8680-01 10 119043112 119043112 C T PDZD8 Silent p.Q1044Q 0.35 TCGA-BR-8680-01 10 119044160 119044160 C A PDZD8 Missense_Mutation p.R695I 0.27 deleterious(0.01) benign(0.093) TCGA-BR-8680-01 10 119044314 119044314 C T PDZD8 Missense_Mutation p.D644N 0.35 deleterious(0.01) possibly_damaging(0.642) TCGA-BR-8680-01 10 120070249 120070249 A C FAM204A 3'UTR 0.44 TCGA-BR-8680-01 10 120460905 120460905 C T CACUL1 Missense_Mutation p.E237K 0.43 deleterious(0.02) possibly_damaging(0.868) TCGA-BR-8680-01 10 120825078 120825078 A G EIF3A Missense_Mutation p.S319P 0.33 deleterious(0) unknown(0) TCGA-BR-8680-01 10 120923675 120923675 A C SFXN4 Missense_Mutation p.L49V 0.51 tolerated(0.28) possibly_damaging(0.462) TCGA-BR-8680-01 10 121436099 121436099 G T BAG3 Nonsense_Mutation p.E345* 0.42 TCGA-BR-8680-01 10 121565919 121565919 T C INPP5F Missense_Mutation p.V456A 0.27 deleterious(0) probably_damaging(0.957) TCGA-BR-8680-01 10 12280462 12280462 T G CDC123 Missense_Mutation p.F232C 0.37 deleterious(0) probably_damaging(0.987) TCGA-BR-8680-01 10 123274722 123274722 C T FGFR2 Missense_Mutation p.R400Q 0.30 deleterious(0.02) probably_damaging(0.997) TCGA-BR-8680-01 10 123997519 123997519 A G TACC2 Missense_Mutation p.Y2772C 0.38 probably_damaging(0.996) TCGA-BR-8680-01 10 124009084 124009084 C T TACC2 Nonsense_Mutation p.R2896* 0.38 TCGA-BR-8680-01 10 124043396 124043396 C A BTBD16 Missense_Mutation p.F66L 0.39 tolerated(0.51) benign(0.034) TCGA-BR-8680-01 10 124271569 124271569 C T HTRA1 Missense_Mutation p.T421I 0.22 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 10 124594392 124594392 T C CUZD1 Silent p.S404S 0.35 TCGA-BR-8680-01 10 124692137 124692137 G T C10orf88 Missense_Mutation p.L382I 0.33 tolerated(0.65) probably_damaging(0.994) TCGA-BR-8680-01 10 124812651 124812651 G T ACADSB Missense_Mutation p.E401D 0.38 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 10 126448962 126448962 C T METTL10 3'UTR 0.30 TCGA-BR-8680-01 10 127422070 127422070 T G EDRF1 Missense_Mutation p.F409C 0.50 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 10 127431743 127431743 C T EDRF1 Missense_Mutation p.P830S 0.27 tolerated(0.39) benign(0.01) TCGA-BR-8680-01 10 127459031 127459031 C T MMP21 Missense_Mutation p.R370Q 0.30 tolerated(0.11) benign(0.177) TCGA-BR-8680-01 10 127569490 127569490 A C DHX32 5'UTR 0.37 TCGA-BR-8680-01 10 12940464 12940464 C T CCDC3 Silent p.P255P 0.26 TCGA-BR-8680-01 10 129899683 129899683 G A MKI67 Missense_Mutation p.L3182F 0.27 tolerated(0.05) benign(0.018) TCGA-BR-8680-01 10 129901203 129901203 T G MKI67 Missense_Mutation p.K2967N 0.51 deleterious(0) probably_damaging(0.972) TCGA-BR-8680-01 10 129904177 129904177 A C MKI67 Missense_Mutation p.I1976S 0.36 tolerated(0.38) benign(0.324) TCGA-BR-8680-01 10 129905488 129905488 T C MKI67 Missense_Mutation p.H1539R 0.08 tolerated(0.13) benign(0.058) TCGA-BR-8680-01 10 129907415 129907415 T C MKI67 Missense_Mutation p.N897D 0.35 tolerated(0.22) benign(0.074) TCGA-BR-8680-01 10 131557541 131557541 T C MGMT Missense_Mutation p.L148S 0.32 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 10 131760461 131760461 G A EBF3 Missense_Mutation p.R129C 0.35 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 10 131943557 131943557 G T GLRX3 Nonsense_Mutation p.E59* 0.29 TCGA-BR-8680-01 10 132965127 132965127 C T TCERG1L Missense_Mutation p.R293Q 0.12 deleterious(0.03) benign(0.075) TCGA-BR-8680-01 10 13336491 13336491 C A PHYH Missense_Mutation p.M117I 0.39 tolerated(0.32) benign(0) TCGA-BR-8680-01 10 133758887 133758887 C T PPP2R2D Silent p.F217F 0.36 TCGA-BR-8680-01 10 133784192 133784192 T G BNIP3 Missense_Mutation p.K163N 0.40 deleterious(0.01) probably_damaging(1) TCGA-BR-8680-01 10 134016247 134016247 T G DPYSL4 Missense_Mutation p.F460C 0.39 tolerated(0.16) benign(0) TCGA-BR-8680-01 10 134161693 134161693 G T LRRC27 Missense_Mutation p.W253C 0.31 deleterious(0) probably_damaging(0.977) TCGA-BR-8680-01 10 13481494 13481494 G A BEND7 Missense_Mutation p.A362V 0.27 tolerated_low_confidence(0.17) benign(0.011) TCGA-BR-8680-01 10 135009295 135009295 G A KNDC1 Silent p.P568P 0.23 TCGA-BR-8680-01 10 135015105 135015105 C T KNDC1 Silent p.F1030F 0.31 TCGA-BR-8680-01 10 135076614 135076614 C A ADAM8 3'UTR 0.31 TCGA-BR-8680-01 10 135347293 135347293 G A CYP2E1 Missense_Mutation p.D287N 0.30 deleterious(0.02) benign(0.223) TCGA-BR-8680-01 10 13735997 13735997 C T FRMD4A Missense_Mutation p.D340N 0.33 tolerated(0.06) probably_damaging(0.962) TCGA-BR-8680-01 10 1405799 1405799 G A ADARB2 Silent p.F167F 0.43 TCGA-BR-8680-01 10 14572476 14572476 G T FAM107B Missense_Mutation p.L170I 0.29 deleterious(0.03) probably_damaging(0.996) TCGA-BR-8680-01 10 14938972 14938972 C A SUV39H2 Missense_Mutation p.S102Y 0.33 deleterious(0.03) benign(0.002) TCGA-BR-8680-01 10 14950396 14950396 G A DCLRE1C 3'UTR 0.35 TCGA-BR-8680-01 10 14951273 14951273 C T DCLRE1C Missense_Mutation p.V405I 0.30 tolerated(1) benign(0.002) TCGA-BR-8680-01 10 15138343 15138343 G T C10orf111 3'UTR 0.46 TCGA-BR-8680-01 10 15161473 15161473 C A NMT2 Missense_Mutation p.D347Y 0.28 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 10 15255460 15255460 G A FAM171A1 Silent p.F709F 0.24 TCGA-BR-8680-01 10 15258059 15258059 C T FAM171A1 Missense_Mutation p.A308T 0.36 tolerated(0.6) probably_damaging(0.914) TCGA-BR-8680-01 10 15573138 15573138 G T ITGA8 Missense_Mutation p.P965T 0.28 tolerated(0.07) benign(0.008) TCGA-BR-8680-01 10 15600166 15600166 G A ITGA8 Silent p.S891S 0.31 TCGA-BR-8680-01 10 15628612 15628612 G A ITGA8 Silent p.I781I 0.26 TCGA-BR-8680-01 10 15821133 15821133 T C FAM188A Missense_Mutation p.Y399C 0.34 deleterious(0) benign(0.093) TCGA-BR-8680-01 10 16526545 16526545 G T PTER Missense_Mutation p.M54I 0.41 tolerated(0.12) benign(0.175) TCGA-BR-8680-01 10 16553255 16553255 G A PTER Silent p.%3D 0.31 TCGA-BR-8680-01 10 16556481 16556481 G A C1QL3 3'UTR 0.35 TCGA-BR-8680-01 10 16911750 16911750 G A CUBN Silent p.C3113C 0.36 TCGA-BR-8680-01 10 16918924 16918924 G A CUBN Silent p.F3026F 0.31 TCGA-BR-8680-01 10 17024530 17024530 A G CUBN Silent p.L1550L 0.35 TCGA-BR-8680-01 10 17145179 17145179 A G CUBN Missense_Mutation p.V492A 0.45 tolerated(0.86) benign(0.023) TCGA-BR-8680-01 10 17147483 17147483 A G CUBN Silent p.S401S 0.27 TCGA-BR-8680-01 10 17201203 17201203 C T TRDMT1 Missense_Mutation p.R162Q 0.34 deleterious(0) probably_damaging(0.996) TCGA-BR-8680-01 10 17277206 17277206 G T VIM Missense_Mutation p.E349D 0.25 tolerated(0.66) benign(0.083) TCGA-BR-8680-01 10 17432535 17432535 C T ST8SIA6 Silent p.T95T 0.28 TCGA-BR-8680-01 10 17891665 17891665 A C MRC1L1 Missense_Mutation p.K382N 0.41 probably_damaging(0.984) TCGA-BR-8680-01 10 17905582 17905582 G T MRC1L1 Missense_Mutation p.R558M 0.70 probably_damaging(0.987) TCGA-BR-8680-01 10 18138590 18138590 A C MRC1 Missense_Mutation p.K382N 0.23 deleterious(0.01) probably_damaging(0.995) TCGA-BR-8680-01 10 18280228 18280228 A G SLC39A12 Missense_Mutation p.D473G 0.27 tolerated(0.42) benign(0.004) TCGA-BR-8680-01 10 18331839 18331839 T G SLC39A12 3'UTR 0.57 TCGA-BR-8680-01 10 18689931 18689931 G A CACNB2 Intron 0.44 TCGA-BR-8680-01 10 18875000 18875000 T G NSUN6 Missense_Mutation p.K267T 0.35 deleterious(0) possibly_damaging(0.864) TCGA-BR-8680-01 10 20465940 20465940 G T PLXDC2 Missense_Mutation p.R299I 0.29 deleterious(0) probably_damaging(0.98) TCGA-BR-8680-01 10 21098812 21098812 C T NEBL Missense_Mutation p.R845H 0.29 deleterious(0) probably_damaging(0.991) TCGA-BR-8680-01 10 21177096 21177096 G T NEBL Missense_Mutation p.S100Y 0.30 deleterious(0) possibly_damaging(0.795) TCGA-BR-8680-01 10 21906051 21906051 A C MLLT10 Missense_Mutation p.K205T 0.21 deleterious(0.02) possibly_damaging(0.852) TCGA-BR-8680-01 10 22171227 22171227 C T DNAJC1 Missense_Mutation p.R321Q 0.29 tolerated(0.13) possibly_damaging(0.477) TCGA-BR-8680-01 10 22680806 22680806 C A SPAG6 Missense_Mutation p.S385Y 0.30 deleterious(0.02) benign(0.139) TCGA-BR-8680-01 10 23611421 23611421 G T C10orf67 Missense_Mutation p.L126I 0.28 tolerated(0.22) benign(0.023) TCGA-BR-8680-01 10 24832504 24832504 C T KIAA1217 Silent p.V1435V 0.38 TCGA-BR-8680-01 10 24874037 24874037 T C ARHGAP21 Silent p.A1727A 0.37 TCGA-BR-8680-01 10 25312156 25312156 C T THNSL1 Missense_Mutation p.L2F 0.24 tolerated_low_confidence(0.3) benign(0.022) TCGA-BR-8680-01 10 25464659 25464659 G A GPR158 Missense_Mutation p.E104K 0.30 deleterious(0.01) possibly_damaging(0.791) TCGA-BR-8680-01 10 25509998 25509998 A G GPR158 Missense_Mutation p.D307G 0.30 deleterious(0) probably_damaging(0.96) TCGA-BR-8680-01 10 25861601 25861601 G A GPR158 Missense_Mutation p.R513Q 0.32 deleterious(0.01) possibly_damaging(0.758) TCGA-BR-8680-01 10 26385323 26385323 T G MYO3A Missense_Mutation p.F526V 0.39 deleterious(0) probably_damaging(0.969) TCGA-BR-8680-01 10 26490219 26490219 G T MYO3A Missense_Mutation p.R1524I 0.29 deleterious_low_confidence(0) possibly_damaging(0.866) TCGA-BR-8680-01 10 267147 267147 G A ZMYND11 Missense_Mutation p.E97K 0.29 deleterious(0.03) benign(0.062) TCGA-BR-8680-01 10 27066139 27066139 C T ABI1 Missense_Mutation p.R106Q 0.29 deleterious(0.01) benign(0.314) TCGA-BR-8680-01 10 27323866 27323866 A C ANKRD26 Missense_Mutation p.F1171L 0.30 tolerated(0.08) possibly_damaging(0.901) TCGA-BR-8680-01 10 27335401 27335401 T C ANKRD26 Silent p.K622K 0.28 TCGA-BR-8680-01 10 27356125 27356125 A C ANKRD26 Missense_Mutation p.L390V 0.31 tolerated(0.23) benign(0.015) TCGA-BR-8680-01 10 27368089 27368089 G T ANKRD26 Missense_Mutation p.L248I 0.34 tolerated(0.4) benign(0.055) TCGA-BR-8680-01 10 27411786 27411786 G T YME1L1 Missense_Mutation p.L464I 0.32 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 10 27411858 27411858 A C YME1L1 Missense_Mutation p.L440V 0.07 deleterious(0.01) probably_damaging(0.987) TCGA-BR-8680-01 10 27459259 27459259 A C MASTL Missense_Mutation p.K457N 0.35 tolerated(0.13) benign(0.001) TCGA-BR-8680-01 10 27687698 27687698 A G PTCHD3 Missense_Mutation p.V610A 0.37 tolerated(0.14) benign(0.006) TCGA-BR-8680-01 10 27702138 27702138 C T PTCHD3 Missense_Mutation p.D348N 0.30 tolerated(0.95) benign(0.023) TCGA-BR-8680-01 10 27702944 27702944 G A PTCHD3 Missense_Mutation p.S79L 0.29 tolerated(0.32) benign(0.017) TCGA-BR-8680-01 10 28023641 28023641 C A MKX Missense_Mutation p.E194D 0.29 tolerated(0.25) probably_damaging(0.99) TCGA-BR-8680-01 10 28196681 28196681 G A ARMC4 Missense_Mutation p.R841C 0.21 deleterious(0.01) possibly_damaging(0.759) TCGA-BR-8680-01 10 28274087 28274087 C A ARMC4 Nonsense_Mutation p.E146* 0.32 TCGA-BR-8680-01 10 28900756 28900756 A C WAC Silent p.R448R 0.31 TCGA-BR-8680-01 10 28905110 28905110 G T WAC Missense_Mutation p.R522I 0.31 deleterious(0.01) possibly_damaging(0.897) TCGA-BR-8680-01 10 294869 294869 G A ZMYND11 Silent p.K509K 0.45 TCGA-BR-8680-01 10 29813568 29813568 C A SVIL Nonsense_Mutation p.E807* 0.32 TCGA-BR-8680-01 10 31809761 31809761 A G ZEB1 Missense_Mutation p.T501A 0.30 tolerated(0.46) benign(0.002) TCGA-BR-8680-01 10 32311856 32311856 C T KIF5B Missense_Mutation p.E612K 0.40 deleterious(0) probably_damaging(0.985) TCGA-BR-8680-01 10 32327109 32327109 G T KIF5B Missense_Mutation p.N160K 0.21 deleterious(0) possibly_damaging(0.646) TCGA-BR-8680-01 10 33000570 33000570 A C C10ORF68 Missense_Mutation p.E134D 0.33 tolerated(0.07) benign(0.1) TCGA-BR-8680-01 10 33143334 33143334 C T C10ORF68 Missense_Mutation p.S586L 0.37 tolerated(0.13) possibly_damaging(0.793) TCGA-BR-8680-01 10 33196060 33196060 C T ITGB1 Intron 0.30 TCGA-BR-8680-01 10 33545355 33545355 G A NRP1 Nonsense_Mutation p.R235* 0.29 TCGA-BR-8680-01 10 34601225 34601225 A C PARD3 Intron 0.38 TCGA-BR-8680-01 10 35467886 35467886 G T CREM Nonsense_Mutation p.E80* 0.39 TCGA-BR-8680-01 10 35842060 35842060 T C CCNY Silent p.A231A 0.35 TCGA-BR-8680-01 10 37422915 37422915 A G ANKRD30A Missense_Mutation p.D174G 0.28 deleterious(0) probably_damaging(0.945) TCGA-BR-8680-01 10 37454065 37454065 A C ANKRD30A Missense_Mutation p.E626D 0.32 tolerated(0.1) benign(0.027) TCGA-BR-8680-01 10 37490200 37490200 T C ANKRD30A Missense_Mutation p.V883A 0.32 tolerated(0.15) benign(0) TCGA-BR-8680-01 10 38121547 38121547 C T ZNF248 Missense_Mutation p.E246K 0.39 deleterious(0.05) benign(0.037) TCGA-BR-8680-01 10 38121740 38121740 C A ZNF248 Missense_Mutation p.E181D 0.33 tolerated(0.07) benign(0.012) TCGA-BR-8680-01 10 38345612 38345612 C T ZNF33A 3'UTR 0.16 TCGA-BR-8680-01 10 38680932 38680932 A C SEPT7P9 RNA 0.15 TCGA-BR-8680-01 10 38680997 38680997 T C SEPT7P9 RNA 0.16 TCGA-BR-8680-01 10 43014647 43014647 G T ZNF37BP RNA 0.29 TCGA-BR-8680-01 10 43015615 43015615 C T ZNF37BP RNA 0.17 TCGA-BR-8680-01 10 43316063 43316063 C T BMS1 Silent p.I959I 0.27 TCGA-BR-8680-01 10 43608350 43608350 C T RET Silent p.P566P 0.17 TCGA-BR-8680-01 10 43623723 43623723 C A RET 3'UTR 0.35 TCGA-BR-8680-01 10 43679000 43679000 T C CSGALNACT2 3'UTR 0.38 TCGA-BR-8680-01 10 44052344 44052344 C T ZNF239 Missense_Mutation p.R395K 0.40 deleterious(0.02) probably_damaging(0.998) TCGA-BR-8680-01 10 44053445 44053445 G A ZNF239 Missense_Mutation p.S28F 0.30 deleterious(0.04) benign(0.001) TCGA-BR-8680-01 10 460034 460034 C T DIP2C Silent p.P292P 0.29 TCGA-BR-8680-01 10 46111831 46111831 T G ZFAND4 3'UTR 0.24 TCGA-BR-8680-01 10 46121766 46121766 A G ZFAND4 Missense_Mutation p.L502P 0.35 deleterious(0.04) benign(0.055) TCGA-BR-8680-01 10 48414100 48414100 G A GDF2 Silent p.V256V 0.43 TCGA-BR-8680-01 10 49444554 49444554 T C FRMPD2 Missense_Mutation p.M322V 0.29 tolerated(1) benign(0) TCGA-BR-8680-01 10 50227580 50227580 C T VSTM4 3'UTR 0.42 TCGA-BR-8680-01 10 50819126 50819126 C T SLC18A3 Missense_Mutation p.R114C 0.27 deleterious(0.01) possibly_damaging(0.773) TCGA-BR-8680-01 10 50830170 50830170 A G CHAT Silent p.V242V 0.31 TCGA-BR-8680-01 10 50953530 50953530 G A OGDHL Missense_Mutation p.R497W 0.26 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 10 51464802 51464802 G A AGAP7 Missense_Mutation p.L552F 0.16 tolerated(0.08) probably_damaging(0.961) TCGA-BR-8680-01 10 51562273 51562273 T C MSMB Missense_Mutation p.V73A 0.34 tolerated(0.8) benign(0.222) TCGA-BR-8680-01 10 51829368 51829368 A C FAM21A Missense_Mutation p.K63T 0.33 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 10 52103662 52103662 G A SGMS1 Silent p.H71H 0.29 TCGA-BR-8680-01 10 5242274 5242274 G A AKR1C4 Missense_Mutation p.G72D 0.29 deleterious(0) possibly_damaging(0.892) TCGA-BR-8680-01 10 52912940 52912940 A C PRKG1 Missense_Mutation p.K110Q 0.34 tolerated(0.13) benign(0.022) TCGA-BR-8680-01 10 53458833 53458833 T G CSTF2T Silent p.R159R 0.32 TCGA-BR-8680-01 10 54053668 54053668 C A PRKG1 3'UTR 0.31 TCGA-BR-8680-01 10 55566762 55566762 G A PCDH15 Silent p.N1541N 0.26 TCGA-BR-8680-01 10 55569095 55569095 C T PCDH15 Missense_Mutation p.R506K 0.39 deleterious_low_confidence(0) unknown(0) TCGA-BR-8680-01 10 55569225 55569225 T G PCDH15 Missense_Mutation p.K463Q 0.35 deleterious_low_confidence(0.01) unknown(0) TCGA-BR-8680-01 10 55582450 55582450 C T PCDH15 Missense_Mutation p.R1681K 0.32 tolerated_low_confidence(0.15) benign(0.003) TCGA-BR-8680-01 10 55700682 55700682 G T PCDH15 Missense_Mutation p.S1059Y 0.26 tolerated(0.17) possibly_damaging(0.532) TCGA-BR-8680-01 10 5784301 5784301 G A FAM208B Missense_Mutation p.E857K 0.32 tolerated(0.16) benign(0.131) TCGA-BR-8680-01 10 5791054 5791054 G A FAM208B Silent p.E1890E 0.26 TCGA-BR-8680-01 10 5922312 5922312 G T ANKRD16 Missense_Mutation p.L293I 0.26 deleterious(0) probably_damaging(0.934) TCGA-BR-8680-01 10 60548181 60548181 C T BICC1 Missense_Mutation p.R200W 0.24 deleterious(0) probably_damaging(0.991) TCGA-BR-8680-01 10 60588783 60588783 C T BICC1 3'UTR 0.17 TCGA-BR-8680-01 10 61005148 61005148 T G PHYHIPL Missense_Mutation p.F310V 0.36 deleterious(0) benign(0.295) TCGA-BR-8680-01 10 61005308 61005308 A C PHYHIPL Missense_Mutation p.K363T 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8680-01 10 61011369 61011369 C A FAM13C Nonsense_Mutation p.E534* 0.27 TCGA-BR-8680-01 10 61062583 61062583 T G FAM13C Missense_Mutation p.E162A 0.30 deleterious(0.01) benign(0.138) TCGA-BR-8680-01 10 61554295 61554295 C T CCDC6 Missense_Mutation p.G389E 0.33 tolerated(0.08) benign(0.039) TCGA-BR-8680-01 10 61831943 61831943 G A ANK3 Missense_Mutation p.S2899F 0.27 benign(0.094) TCGA-BR-8680-01 10 61832027 61832027 G A ANK3 Missense_Mutation p.S2871L 0.39 benign(0.216) TCGA-BR-8680-01 10 61844546 61844546 C T ANK3 Silent p.G1296G 0.26 TCGA-BR-8680-01 10 64430102 64430102 A C ZNF365 3'UTR 0.42 TCGA-BR-8680-01 10 64973807 64973807 T G JMJD1C Missense_Mutation p.K707T 0.42 deleterious(0) probably_damaging(0.993) TCGA-BR-8680-01 10 69648688 69648688 G A SIRT1 Missense_Mutation p.R199Q 0.27 deleterious(0.01) probably_damaging(0.994) TCGA-BR-8680-01 10 69700806 69700806 A C HERC4 Missense_Mutation p.I806M 0.31 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 10 69793738 69793738 A G HERC4 Silent p.G223G 0.37 TCGA-BR-8680-01 10 69905258 69905258 G A MYPN Missense_Mutation p.D369N 0.32 deleterious(0.03) possibly_damaging(0.544) TCGA-BR-8680-01 10 69948801 69948801 A G MYPN Missense_Mutation p.D948G 0.30 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 10 70099299 70099299 A C HNRNPH3 Missense_Mutation p.N209T 0.30 tolerated(0.2) benign(0.246) TCGA-BR-8680-01 10 70182635 70182635 T G DNA2 Missense_Mutation p.T827P 0.37 deleterious(0.02) possibly_damaging(0.52) TCGA-BR-8680-01 10 70446447 70446447 C T TET1 Missense_Mutation p.S1796L 0.39 tolerated(0.08) benign(0.016) TCGA-BR-8680-01 10 70451273 70451273 G A TET1 Missense_Mutation p.R2038H 0.28 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 10 70525798 70525798 G A CCAR1 Missense_Mutation p.D754N 0.33 tolerated(0.07) probably_damaging(0.956) TCGA-BR-8680-01 10 70644481 70644481 A C STOX1 Missense_Mutation p.K310T 0.36 deleterious(0) possibly_damaging(0.804) TCGA-BR-8680-01 10 70645601 70645601 A C STOX1 Missense_Mutation p.Q683H 0.31 tolerated(0.16) benign(0.035) TCGA-BR-8680-01 10 70776080 70776080 G A KIAA1279 Missense_Mutation p.E592K 0.33 tolerated(0.52) benign(0.013) TCGA-BR-8680-01 10 70864007 70864007 A G SRGN 3'UTR 0.36 TCGA-BR-8680-01 10 70922222 70922222 A G VPS26A Missense_Mutation p.I204M 0.43 deleterious(0.01) probably_damaging(0.96) TCGA-BR-8680-01 10 71144127 71144127 A C HK1 Missense_Mutation p.N541H 0.39 deleterious(0.02) probably_damaging(0.996) TCGA-BR-8680-01 10 71152041 71152041 T C HK1 Silent p.Y736Y 0.32 TCGA-BR-8680-01 10 71657243 71657243 A C COL13A1 Missense_Mutation p.S224R 0.32 tolerated(0.35) possibly_damaging(0.852) TCGA-BR-8680-01 10 71718571 71718571 A C COL13A1 3'UTR 0.36 TCGA-BR-8680-01 10 72517751 72517751 C T ADAMTS14 Missense_Mutation p.R994W 0.43 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 10 72520350 72520350 C T ADAMTS14 Missense_Mutation p.T1141M 0.22 tolerated(0.09) benign(0.008) TCGA-BR-8680-01 10 73122094 73122094 G A SLC29A3 Missense_Mutation p.R386Q 0.29 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 10 7326097 7326097 C A SFMBT2 Missense_Mutation p.G181C 0.37 deleterious(0.03) possibly_damaging(0.728) TCGA-BR-8680-01 10 7326196 7326196 T G SFMBT2 Intron 0.24 TCGA-BR-8680-01 10 73466770 73466770 G A C10orf105 3'Flank 0.36 TCGA-BR-8680-01 10 73767275 73767275 C T CHST3 Silent p.F162F 0.39 TCGA-BR-8680-01 10 73830147 73830147 C A SPOCK2 Missense_Mutation p.D133Y 0.29 deleterious(0.03) probably_damaging(0.953) TCGA-BR-8680-01 10 74714364 74714364 G A PLA2G12B Missense_Mutation p.T27M 0.29 deleterious(0.05) possibly_damaging(0.553) TCGA-BR-8680-01 10 74813221 74813221 G A P4HA1 Silent p.G197G 0.41 TCGA-BR-8680-01 10 74890738 74890738 A G NUDT13 3'UTR 0.53 TCGA-BR-8680-01 10 75035326 75035326 A C TTC18 Missense_Mutation p.L921V 0.27 deleterious(0) probably_damaging(0.978) TCGA-BR-8680-01 10 75435151 75435151 A C AGAP5 Missense_Mutation p.F423V 0.33 deleterious(0) probably_damaging(0.997) TCGA-BR-8680-01 10 75488238 75488238 A C RP11-464F9.1 RNA 0.39 TCGA-BR-8680-01 10 75542236 75542236 G T CHCHD1 Intron 0.33 TCGA-BR-8680-01 10 75558819 75558819 C T ZSWIM8 Silent p.G1412G 0.29 TCGA-BR-8680-01 10 76784845 76784845 C T KAT6B Missense_Mutation p.P1168S 0.36 possibly_damaging(0.689) TCGA-BR-8680-01 10 76788342 76788342 C T KAT6B Missense_Mutation p.R1254C 0.30 possibly_damaging(0.776) TCGA-BR-8680-01 10 7682734 7682734 T G ITIH5 Missense_Mutation p.K128N 0.32 deleterious(0.01) possibly_damaging(0.568) TCGA-BR-8680-01 10 77542700 77542700 G T C10orf11 5'UTR 0.40 TCGA-BR-8680-01 10 7769791 7769791 G T ITIH2 Missense_Mutation p.G427C 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-BR-8680-01 10 7785224 7785224 T C ITIH2 Splice_Site p.X737_splice 0.30 TCGA-BR-8680-01 10 7816807 7816807 A T KIN Missense_Mutation p.S219T 0.34 tolerated(0.33) benign(0.003) TCGA-BR-8680-01 10 7838094 7838094 C T ATP5C1 Nonsense_Mutation p.R23* 0.22 TCGA-BR-8680-01 10 7844253 7844253 G A ATP5C1 Missense_Mutation p.D220N 0.35 tolerated(0.25) benign(0.064) TCGA-BR-8680-01 10 7844768 7844768 G A ATP5C1 Missense_Mutation p.A281T 0.37 deleterious(0) probably_damaging(0.952) TCGA-BR-8680-01 10 78651404 78651404 G A KCNMA1 Missense_Mutation p.A1057V 0.44 tolerated(0.29) benign(0.149) TCGA-BR-8680-01 10 7866365 7866365 T C TAF3 Missense_Mutation p.I84T 0.38 deleterious(0.02) benign(0.101) TCGA-BR-8680-01 10 79397114 79397114 A G KCNMA1 Missense_Mutation p.V96A 0.22 tolerated(0.14) possibly_damaging(0.839) TCGA-BR-8680-01 10 79779000 79779000 G T POLR3A Missense_Mutation p.F403L 0.31 tolerated(0.86) benign(0) TCGA-BR-8680-01 10 8115837 8115837 G A GATA3 Missense_Mutation p.A396T 0.27 tolerated(0.07) benign(0.023) TCGA-BR-8680-01 10 81706344 81706344 C A SFTPD Missense_Mutation p.K24N 0.52 tolerated(0.11) benign(0.007) TCGA-BR-8680-01 10 84118498 84118498 C T NRG3 Missense_Mutation p.T276M 0.32 deleterious(0.04) probably_damaging(0.998) TCGA-BR-8680-01 10 84745345 84745345 C A NRG3 Missense_Mutation p.S692Y 0.26 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-BR-8680-01 10 85902490 85902490 C T GHITM Missense_Mutation p.S70L 0.35 deleterious(0.02) possibly_damaging(0.523) TCGA-BR-8680-01 10 86012656 86012656 C T RGR Silent p.F138F 0.21 TCGA-BR-8680-01 10 871710 871710 C T LARP4B Missense_Mutation p.R409Q 0.36 tolerated(0.33) benign(0.217) TCGA-BR-8680-01 10 875374 875374 A G LARP4B Missense_Mutation p.I359T 0.32 deleterious(0) possibly_damaging(0.792) TCGA-BR-8680-01 10 88769752 88769752 T C RP11-96C23.10 Intron 0.25 TCGA-BR-8680-01 10 90356076 90356076 G T LIPJ Missense_Mutation p.R160I 0.36 deleterious(0) possibly_damaging(0.739) TCGA-BR-8680-01 10 90427119 90427119 G A LIPF Missense_Mutation p.G32E 0.32 tolerated(0.56) benign(0.005) TCGA-BR-8680-01 10 90582738 90582738 T G ANKRD22 Missense_Mutation p.K179T 0.34 deleterious(0.02) possibly_damaging(0.809) TCGA-BR-8680-01 10 910209 910209 A G LARP4B Missense_Mutation p.V48A 0.33 tolerated(0.12) benign(0.003) TCGA-BR-8680-01 10 91066464 91066464 C T IFIT2 Missense_Mutation p.R251C 0.32 tolerated(0.16) benign(0.016) TCGA-BR-8680-01 10 91099660 91099660 T G IFIT3 Missense_Mutation p.N416K 0.25 tolerated(0.16) benign(0.156) TCGA-BR-8680-01 10 91484801 91484801 G A KIF20B Silent p.E629E 0.35 TCGA-BR-8680-01 10 91498280 91498280 G T KIF20B Nonsense_Mutation p.E1188* 0.28 TCGA-BR-8680-01 10 91528597 91528597 A C KIF20B Missense_Mutation p.K1692Q 0.34 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 10 92675935 92675935 C T ANKRD1 Missense_Mutation p.R215Q 0.28 tolerated(0.14) possibly_damaging(0.897) TCGA-BR-8680-01 10 93786976 93786976 G A BTAF1 Silent p.A1775A 0.35 TCGA-BR-8680-01 10 94215362 94215362 T G IDE Missense_Mutation p.N979H 0.30 tolerated(0.12) benign(0.049) TCGA-BR-8680-01 10 94452231 94452231 C T HHEX Silent p.F156F 0.39 TCGA-BR-8680-01 10 94824234 94824234 G A CYP26C1 Missense_Mutation p.D268N 0.22 tolerated(0.06) benign(0.01) TCGA-BR-8680-01 10 94836943 94836943 T C CYP26A1 Missense_Mutation p.L459P 0.31 deleterious(0) probably_damaging(0.989) TCGA-BR-8680-01 10 95161176 95161176 C A MYOF Missense_Mutation p.Q372H 0.29 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 10 95335855 95335855 C T FFAR4 Missense_Mutation p.S192L 0.28 tolerated(0.67) benign(0.002) TCGA-BR-8680-01 10 95445100 95445100 T C FRA10AC1 Silent p.G176G 0.35 TCGA-BR-8680-01 10 95447191 95447191 G A FRA10AC1 Nonsense_Mutation p.R161* 0.38 TCGA-BR-8680-01 10 95556817 95556817 C T LGI1 Nonsense_Mutation p.R311* 0.30 TCGA-BR-8680-01 10 95720561 95720561 G A PIPSL RNA 0.33 TCGA-BR-8680-01 10 95791016 95791016 G A PLCE1 Silent p.K71K 0.06 TCGA-BR-8680-01 10 96097537 96097537 C T NOC3L Missense_Mutation p.R729Q 0.33 tolerated(0.06) benign(0.124) TCGA-BR-8680-01 10 96099593 96099593 C T NOC3L Missense_Mutation p.R622Q 0.18 deleterious(0.01) probably_damaging(0.994) TCGA-BR-8680-01 10 96796963 96796963 C A CYP2C8 Missense_Mutation p.K465N 0.33 deleterious(0.04) benign(0.054) TCGA-BR-8680-01 10 96829106 96829106 T G CYP2C8 Silent p.S18S 0.37 TCGA-BR-8680-01 10 97779216 97779216 C T CC2D2B Intron 0.26 TCGA-BR-8680-01 10 97779620 97779620 A G CC2D2B Intron 0.35 TCGA-BR-8680-01 10 97916956 97916956 G T ZNF518A RNA 0.32 TCGA-BR-8680-01 10 97918860 97918860 A C ZNF518A RNA 0.27 TCGA-BR-8680-01 10 98127810 98127810 A C TLL2 3'UTR 0.27 TCGA-BR-8680-01 10 98321841 98321841 T G TM9SF3 Missense_Mutation p.K159T 0.37 deleterious(0.01) probably_damaging(0.934) TCGA-BR-8680-01 10 98376434 98376434 C T PIK3AP1 Missense_Mutation p.R659Q 0.28 deleterious(0) probably_damaging(0.995) TCGA-BR-8680-01 10 98408569 98408569 C T PIK3AP1 Silent p.A344A 0.21 TCGA-BR-8680-01 10 98715594 98715594 C T LCOR Missense_Mutation p.S406L 0.30 tolerated_low_confidence(0.52) benign(0) TCGA-BR-8680-01 10 98743206 98743206 G A C10orf12 Missense_Mutation p.E687K 0.30 tolerated(0.58) benign(0.016) TCGA-BR-8680-01 10 98744567 98744567 G A C10orf12 Silent p.T1140T 0.33 TCGA-BR-8680-01 10 98764578 98764578 G T SLIT1 Silent p.V1194V 0.30 TCGA-BR-8680-01 10 99223673 99223673 A C MMS19 Nonsense_Mutation p.Y618* 0.33 TCGA-BR-8680-01 10 99225597 99225597 G A MMS19 Missense_Mutation p.P574L 0.26 deleterious(0) probably_damaging(0.963) TCGA-BR-8680-01 10 99655723 99655723 G A CRTAC1 Silent p.F412F 0.27 TCGA-BR-8680-01 10 99991421 99991421 T C R3HCC1L Silent p.L646L 0.37 TCGA-BR-8680-01 11 100863000 100863000 C A TMEM133 5'UTR 0.23 TCGA-BR-8680-01 11 100922293 100922293 C T PGR Missense_Mutation p.R740Q 0.32 deleterious(0.01) probably_damaging(0.952) TCGA-BR-8680-01 11 101832555 101832555 A C KIAA1377 Missense_Mutation p.E263D 0.23 tolerated(0.08) benign(0.117) TCGA-BR-8680-01 11 101863564 101863564 A G KIAA1377 Missense_Mutation p.I1100M 0.30 tolerated(0.08) benign(0.269) TCGA-BR-8680-01 11 102391451 102391451 T C MMP7 3'UTR 0.39 TCGA-BR-8680-01 11 102589167 102589167 G A MMP8 Silent p.I254I 0.16 TCGA-BR-8680-01 11 102592161 102592161 G A MMP8 Missense_Mutation p.A198V 0.16 deleterious(0) benign(0.253) TCGA-BR-8680-01 11 1026380 1026380 G T MUC6 Missense_Mutation p.F831L 0.22 unknown(0) TCGA-BR-8680-01 11 102650413 102650413 T C MMP10 Missense_Mutation p.N57D 0.30 tolerated(0.18) benign(0.008) TCGA-BR-8680-01 11 1027310 1027310 A G MUC6 Missense_Mutation p.F730S 0.45 unknown(0) TCGA-BR-8680-01 11 1027763 1027763 C T MUC6 Missense_Mutation p.A635T 0.21 unknown(0) TCGA-BR-8680-01 11 102986023 102986023 G T DYNC2H1 Missense_Mutation p.R207I 0.62 benign(0.015) TCGA-BR-8680-01 11 103070011 103070011 G A DYNC2H1 Missense_Mutation p.E2632K 0.41 probably_damaging(0.985) TCGA-BR-8680-01 11 103086472 103086472 A C DYNC2H1 Missense_Mutation p.E2906A 0.48 possibly_damaging(0.854) TCGA-BR-8680-01 11 104817810 104817810 C T CASP4 Silent p.K345K 0.23 TCGA-BR-8680-01 11 104866469 104866469 T G CASP5 Intron 0.41 TCGA-BR-8680-01 11 104897479 104897479 A C CASP1 Intron 0.47 TCGA-BR-8680-01 11 105009778 105009778 A C CARD18 Missense_Mutation p.I12S 0.24 tolerated(0.69) benign(0.145) TCGA-BR-8680-01 11 105732782 105732782 G A GRIA4 Missense_Mutation p.A174T 0.35 tolerated(0.12) possibly_damaging(0.85) TCGA-BR-8680-01 11 106810861 106810861 G T GUCY1A2 Missense_Mutation p.F177L 0.29 tolerated(0.9) benign(0.029) TCGA-BR-8680-01 11 106888540 106888540 C T GUCY1A2 Missense_Mutation p.R81H 0.45 tolerated(0.06) probably_damaging(0.955) TCGA-BR-8680-01 11 10789639 10789639 C T CTR9 Missense_Mutation p.R631C 0.29 deleterious(0) probably_damaging(0.985) TCGA-BR-8680-01 11 107969212 107969212 G T CUL5 Nonsense_Mutation p.E702* 0.38 TCGA-BR-8680-01 11 108114687 108114687 C A ATM Missense_Mutation p.F168L 0.27 tolerated(1) benign(0) TCGA-BR-8680-01 11 108138042 108138042 G A ATM Missense_Mutation p.E871K 0.38 deleterious(0.05) benign(0.047) TCGA-BR-8680-01 11 108203492 108203492 C T ATM Nonsense_Mutation p.R2598* 0.24 TCGA-BR-8680-01 11 108213967 108213967 C T ATM Nonsense_Mutation p.R2763* 0.22 TCGA-BR-8680-01 11 108216486 108216486 C A ATM Missense_Mutation p.S2812Y 0.39 tolerated(0.18) possibly_damaging(0.781) TCGA-BR-8680-01 11 108216533 108216533 C A ATM Missense_Mutation p.Q2828K 0.27 tolerated(0.37) benign(0.004) TCGA-BR-8680-01 11 108593962 108593962 G T DDX10 Nonsense_Mutation p.E580* 0.31 TCGA-BR-8680-01 11 110007958 110007958 G T ZC3H12C Nonsense_Mutation p.E198* 0.22 TCGA-BR-8680-01 11 110035304 110035304 A C ZC3H12C Missense_Mutation p.Q498H 0.36 tolerated(0.59) benign(0.002) TCGA-BR-8680-01 11 110333089 110333089 G A FDX1 Missense_Mutation p.G151D 0.41 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 11 110451042 110451042 A C ARHGAP20 Silent p.G876G 0.35 TCGA-BR-8680-01 11 111404477 111404477 A G C11orf88 Missense_Mutation p.T143A 0.28 deleterious(0.03) benign(0.069) TCGA-BR-8680-01 11 111624289 111624289 C T PPP2R1B Missense_Mutation p.D348N 0.35 deleterious(0) probably_damaging(0.998) TCGA-BR-8680-01 11 111746444 111746444 G A FDXACB1 Silent p.I359I 0.39 TCGA-BR-8680-01 11 112064319 112064319 G A BCO2 Missense_Mutation p.R139Q 0.33 deleterious(0.03) possibly_damaging(0.899) TCGA-BR-8680-01 11 113233147 113233147 A G TTC12 Missense_Mutation p.T547A 0.25 tolerated(0.11) benign(0.041) TCGA-BR-8680-01 11 113614686 113614686 A C ZW10 Missense_Mutation p.V450G 0.31 tolerated(0.34) benign(0.063) TCGA-BR-8680-01 11 113650908 113650908 G A CLDN25 Missense_Mutation p.A131T 0.42 tolerated(0.07) benign(0.201) TCGA-BR-8680-01 11 113661046 113661046 G A ATF4P4 RNA 0.34 TCGA-BR-8680-01 11 113670038 113670038 G T USP28 Missense_Mutation p.S1053Y 0.33 deleterious(0) probably_damaging(0.984) TCGA-BR-8680-01 11 113684531 113684531 G T USP28 Intron 0.45 TCGA-BR-8680-01 11 11374429 11374429 G A CSNK2A3 Missense_Mutation p.R80C 0.30 deleterious(0) probably_damaging(0.99) TCGA-BR-8680-01 11 113846067 113846067 A C HTR3A Missense_Mutation p.Q13P 0.23 deleterious_low_confidence(0.03) unknown(0) TCGA-BR-8680-01 11 113860534 113860534 A G HTR3A 3'UTR 0.33 TCGA-BR-8680-01 11 114320615 114320615 G A REXO2 Missense_Mutation p.R211Q 0.40 tolerated(0.06) benign(0.083) TCGA-BR-8680-01 11 115061632 115061632 C A CADM1 Intron 0.35 TCGA-BR-8680-01 11 115085387 115085387 C T CADM1 Missense_Mutation p.R312H 0.36 tolerated(0.37) possibly_damaging(0.83) TCGA-BR-8680-01 11 116653694 116653694 C T ZNF259 Missense_Mutation p.A345T 0.29 tolerated(0.08) benign(0.214) TCGA-BR-8680-01 11 116661297 116661297 G A APOA5 Silent p.H216H 0.27 TCGA-BR-8680-01 11 116692535 116692535 A C APOA4 Missense_Mutation p.L80R 0.32 deleterious(0.05) benign(0.335) TCGA-BR-8680-01 11 117066741 117066741 G A SIDT2 Missense_Mutation p.D820N 0.26 deleterious(0) probably_damaging(0.996) TCGA-BR-8680-01 11 117278689 117278689 A C CEP164 Missense_Mutation p.N1184H 0.33 tolerated(0.18) possibly_damaging(0.804) TCGA-BR-8680-01 11 117307845 117307845 G A DSCAML1 Silent p.Y1631Y 0.24 TCGA-BR-8680-01 11 117375680 117375680 T C DSCAML1 Missense_Mutation p.D774G 0.23 deleterious(0.01) benign(0.339) TCGA-BR-8680-01 11 117387316 117387316 C T DSCAML1 Missense_Mutation p.R610H 0.21 deleterious(0.04) probably_damaging(1) TCGA-BR-8680-01 11 117691317 117691317 C T FXYD2 Intron 0.13 TCGA-BR-8680-01 11 117779398 117779398 C T TMPRSS13 Missense_Mutation p.S404N 0.43 tolerated(0.15) benign(0.34) TCGA-BR-8680-01 11 118039303 118039303 C A SCN2B Missense_Mutation p.E78D 0.29 deleterious(0.01) probably_damaging(0.913) TCGA-BR-8680-01 11 118074145 118074145 C T AMICA1 Missense_Mutation p.R257Q 0.29 tolerated(0.52) benign(0.025) TCGA-BR-8680-01 11 118352757 118352757 A C KMT2A Missense_Mutation p.K1321T 0.45 probably_damaging(0.996) TCGA-BR-8680-01 11 118452034 118452034 G A ARCN1 Missense_Mutation p.R26Q 0.31 deleterious(0.01) probably_damaging(0.974) TCGA-BR-8680-01 11 118498939 118498939 G A PHLDB1 Missense_Mutation p.R467Q 0.26 deleterious(0.01) probably_damaging(0.998) TCGA-BR-8680-01 11 118529423 118529423 C T TREH Missense_Mutation p.G522E 0.23 deleterious(0) probably_damaging(0.957) TCGA-BR-8680-01 11 118754632 118754632 A G CXCR5 5'UTR 0.22 TCGA-BR-8680-01 11 118771988 118771988 C T BCL9L Missense_Mutation p.A822T 0.31 possibly_damaging(0.815) TCGA-BR-8680-01 11 118895938 118895938 A G SLC37A4 Silent p.C384C 0.28 TCGA-BR-8680-01 11 118967732 118967732 G A DPAGT1 Silent p.L401L 0.40 TCGA-BR-8680-01 11 119060991 119060991 C T CCDC153 3'UTR 0.34 TCGA-BR-8680-01 11 119216216 119216216 C A MFRP Missense_Mutation p.K185N 0.25 deleterious(0.02) probably_damaging(0.938) TCGA-BR-8680-01 11 11971915 11971915 C T USP47 Missense_Mutation p.R1089C 0.33 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 11 11971986 11971986 T G USP47 Missense_Mutation p.I1112M 0.36 deleterious(0) probably_damaging(0.997) TCGA-BR-8680-01 11 120292551 120292551 G A ARHGEF12 Missense_Mutation p.R113Q 0.30 deleterious(0) probably_damaging(0.998) TCGA-BR-8680-01 11 120350997 120350997 G A ARHGEF12 Missense_Mutation p.M1365I 0.35 tolerated_low_confidence(0.51) benign(0.001) TCGA-BR-8680-01 11 120957833 120957833 A G TBCEL 3'UTR 0.38 TCGA-BR-8680-01 11 121000423 121000423 C T TECTA Missense_Mutation p.T815M 0.38 deleterious(0.02) benign(0.2) TCGA-BR-8680-01 11 121174120 121174120 T G SC5D Missense_Mutation p.F12L 0.30 tolerated(0.5) benign(0.002) TCGA-BR-8680-01 11 121429396 121429396 G T SORL1 Silent p.V920V 0.23 TCGA-BR-8680-01 11 121478832 121478832 G A SORL1 Missense_Mutation p.R1729H 0.30 tolerated(0.08) probably_damaging(0.984) TCGA-BR-8680-01 11 121491794 121491794 G A SORL1 Missense_Mutation p.D1971N 0.28 deleterious(0.01) probably_damaging(1) TCGA-BR-8680-01 11 12231140 12231140 T C MICAL2 Missense_Mutation p.L229P 0.24 deleterious(0) probably_damaging(0.977) TCGA-BR-8680-01 11 122944366 122944366 C T CLMP Missense_Mutation p.R313H 0.34 tolerated(0.06) benign(0.221) TCGA-BR-8680-01 11 12315174 12315174 C T MICALCL Missense_Mutation p.R66W 0.24 deleterious(0.02) benign(0.326) TCGA-BR-8680-01 11 123477453 123477453 A G GRAMD1B Missense_Mutation p.D344G 0.26 tolerated(0.07) probably_damaging(0.998) TCGA-BR-8680-01 11 123778058 123778058 G T OR8D4 Missense_Mutation p.R307I 0.30 deleterious(0.02) possibly_damaging(0.589) TCGA-BR-8680-01 11 124253243 124253243 T C OR8B2 5'UTR 0.18 TCGA-BR-8680-01 11 124267251 124267251 T C OR8B3 5'UTR 0.18 TCGA-BR-8680-01 11 124413406 124413406 C A OR8B12 Missense_Mutation p.G49W 0.32 tolerated_low_confidence(0.05) benign(0.064) TCGA-BR-8680-01 11 124489454 124489454 A G PANX3 Missense_Mutation p.I268V 0.32 tolerated(1) benign(0.002) TCGA-BR-8680-01 11 124793897 124793897 G A HEPACAM Missense_Mutation p.S146L 0.12 deleterious(0) probably_damaging(0.975) TCGA-BR-8680-01 11 124858023 124858023 A C CCDC15 Missense_Mutation p.K634T 0.32 deleterious(0.05) benign(0.01) TCGA-BR-8680-01 11 124863121 124863121 T C CCDC15 Silent p.N732N 0.18 TCGA-BR-8680-01 11 124908850 124908850 G T CCDC15 Missense_Mutation p.E873D 0.27 deleterious(0.02) possibly_damaging(0.654) TCGA-BR-8680-01 11 125301169 125301169 G T PKNOX2 Nonsense_Mutation p.E434* 0.26 TCGA-BR-8680-01 11 125315903 125315903 C T FEZ1 3'UTR 0.37 TCGA-BR-8680-01 11 12535563 12535563 A G PARVA Missense_Mutation p.N313S 0.34 deleterious(0.02) probably_damaging(0.974) TCGA-BR-8680-01 11 125451124 125451124 C T EI24 Missense_Mutation p.R231W 0.38 deleterious(0) probably_damaging(0.932) TCGA-BR-8680-01 11 125488282 125488282 C A STT3A Missense_Mutation p.L597I 0.33 deleterious(0.02) probably_damaging(0.966) TCGA-BR-8680-01 11 125497713 125497713 T G CHEK1 Missense_Mutation p.F93V 0.22 deleterious(0.01) benign(0.116) TCGA-BR-8680-01 11 125505412 125505412 C T CHEK1 Silent p.I234I 0.26 TCGA-BR-8680-01 11 125617607 125617607 T G PATE1 Missense_Mutation p.V46G 0.33 deleterious(0) possibly_damaging(0.742) TCGA-BR-8680-01 11 125763722 125763722 C T PUS3 Silent p.T468T 0.36 TCGA-BR-8680-01 11 125763900 125763900 C T PUS3 Missense_Mutation p.R409H 0.32 deleterious(0) benign(0.425) TCGA-BR-8680-01 11 125769653 125769653 C A HYLS1 Missense_Mutation p.D130E 0.41 tolerated(0.21) benign(0.144) TCGA-BR-8680-01 11 125792754 125792754 A C DDX25 Missense_Mutation p.E477A 0.29 tolerated(0.16) benign(0.105) TCGA-BR-8680-01 11 125873982 125873982 G T CDON Intron 0.38 TCGA-BR-8680-01 11 126074205 126074205 C T RPUSD4 Missense_Mutation p.R272Q 0.31 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 11 126104933 126104933 G A FAM118B Missense_Mutation p.E13K 0.30 tolerated_low_confidence(0.73) benign(0) TCGA-BR-8680-01 11 1268507 1268507 C T MUC5B Missense_Mutation p.T3466M 0.31 unknown(0) TCGA-BR-8680-01 11 1271226 1271226 G A MUC5B Silent p.T4372T 0.35 TCGA-BR-8680-01 11 128807745 128807745 A C TP53AIP1 5'UTR 0.47 TCGA-BR-8680-01 11 128844756 128844756 C T ARHGAP32 Missense_Mutation p.G765E 0.38 deleterious(0.03) possibly_damaging(0.603) TCGA-BR-8680-01 11 128936648 128936648 T C ARHGAP32 Missense_Mutation p.D202G 0.27 deleterious(0.03) probably_damaging(0.976) TCGA-BR-8680-01 11 130079819 130079819 G A ST14 3'UTR 0.38 TCGA-BR-8680-01 11 130284622 130284622 C A ADAMTS8 Missense_Mutation p.G457V 0.28 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 11 130319043 130319043 G T ADAMTS15 Missense_Mutation p.A59S 0.35 deleterious(0) probably_damaging(0.943) TCGA-BR-8680-01 11 1311585 1311585 G A TOLLIP Missense_Mutation p.R80C 0.29 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 11 13380010 13380010 G A ARNTL Missense_Mutation p.R84H 0.29 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 11 134079276 134079276 C A NCAPD3 Missense_Mutation p.K221N 0.34 deleterious(0.01) benign(0.078) TCGA-BR-8680-01 11 134095105 134095105 A G VPS26B Missense_Mutation p.E30G 0.46 tolerated(0.12) probably_damaging(0.979) TCGA-BR-8680-01 11 134122841 134122841 C T THYN1 5'UTR 0.39 TCGA-BR-8680-01 11 14300968 14300968 T G RRAS2 Missense_Mutation p.K177T 0.31 deleterious(0.02) possibly_damaging(0.643) TCGA-BR-8680-01 11 14479255 14479255 A G COPB1 3'UTR 0.30 TCGA-BR-8680-01 11 14490365 14490365 G A COPB1 Silent p.D669D 0.31 TCGA-BR-8680-01 11 14880774 14880774 C T PDE3B Silent p.L902L 0.32 TCGA-BR-8680-01 11 14891108 14891108 A C PDE3B Missense_Mutation p.K1081Q 0.19 tolerated(0.47) benign(0.039) TCGA-BR-8680-01 11 14901790 14901790 C A CYP2R1 Nonsense_Mutation p.E298* 0.26 TCGA-BR-8680-01 11 14907379 14907379 C T CYP2R1 Missense_Mutation p.E104K 0.33 deleterious(0.01) possibly_damaging(0.748) TCGA-BR-8680-01 11 1578801 1578801 G A DUSP8 Silent p.F275F 0.31 TCGA-BR-8680-01 11 16119153 16119153 A G SOX6 Splice_Site p.X326_splice 0.27 TCGA-BR-8680-01 11 16208354 16208354 T C SOX6 Missense_Mutation p.D228G 0.27 deleterious(0) possibly_damaging(0.622) TCGA-BR-8680-01 11 16824525 16824525 C A PLEKHA7 Missense_Mutation p.E717D 0.36 tolerated(0.25) benign(0.034) TCGA-BR-8680-01 11 16863173 16863173 C T PLEKHA7 Missense_Mutation p.D265N 0.31 deleterious(0) possibly_damaging(0.728) TCGA-BR-8680-01 11 16892681 16892681 A G PLEKHA7 Silent p.F90F 0.31 TCGA-BR-8680-01 11 17139172 17139172 C T PIK3C2A Missense_Mutation p.E1028K 0.35 tolerated(0.16) probably_damaging(0.988) TCGA-BR-8680-01 11 17177086 17177086 G A PIK3C2A Nonsense_Mutation p.R386* 0.27 TCGA-BR-8680-01 11 17190351 17190351 G A PIK3C2A Missense_Mutation p.S313L 0.21 tolerated_low_confidence(0.26) benign(0.001) TCGA-BR-8680-01 11 17537820 17537820 G A USH1C Missense_Mutation p.R410C 0.14 deleterious_low_confidence(0) possibly_damaging(0.8) TCGA-BR-8680-01 11 18042653 18042653 C T TPH1 Missense_Mutation p.S407N 0.37 deleterious(0.02) possibly_damaging(0.881) TCGA-BR-8680-01 11 18057677 18057677 T C TPH1 Missense_Mutation p.N44D 0.21 deleterious(0.02) benign(0.202) TCGA-BR-8680-01 11 18159568 18159568 C A MRGPRX3 Missense_Mutation p.F273L 0.32 deleterious(0) possibly_damaging(0.728) TCGA-BR-8680-01 11 18267004 18267004 C T SAA2 Missense_Mutation p.D97N 0.34 tolerated(0.18) probably_damaging(0.961) TCGA-BR-8680-01 11 18291486 18291486 G T SAA1 3'UTR 0.30 TCGA-BR-8680-01 11 18309169 18309169 G A HPS5 Missense_Mutation p.S877L 0.28 tolerated(0.32) benign(0.016) TCGA-BR-8680-01 11 18421014 18421014 G A LDHA Missense_Mutation p.E84K 0.33 tolerated(0.05) benign(0.327) TCGA-BR-8680-01 11 18500571 18500571 T G LDHAL6A 3'UTR 0.38 TCGA-BR-8680-01 11 18536371 18536371 G A TSG101 Missense_Mutation p.P71S 0.26 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 11 18631601 18631601 C T SPTY2D1 Intron 0.38 TCGA-BR-8680-01 11 18723139 18723139 G A TMEM86A Silent p.V102V 0.30 TCGA-BR-8680-01 11 18723623 18723623 A C TMEM86A 3'UTR 0.36 TCGA-BR-8680-01 11 193746 193746 C A SCGB1C1 Missense_Mutation p.F30L 0.08 tolerated(0.33) probably_damaging(0.992) TCGA-BR-8680-01 11 20668389 20668389 G T SLC6A5 Missense_Mutation p.R660I 0.15 deleterious(0) possibly_damaging(0.822) TCGA-BR-8680-01 11 20673936 20673936 T C SLC6A5 Silent p.C724C 0.33 TCGA-BR-8680-01 11 21135211 21135211 C T NELL1 Silent p.R459R 0.39 TCGA-BR-8680-01 11 21135236 21135236 C T NELL1 Missense_Mutation p.R468C 0.41 tolerated(0.08) benign(0.178) TCGA-BR-8680-01 11 21596583 21596583 A G NELL1 3'UTR 0.43 TCGA-BR-8680-01 11 22291982 22291982 G T ANO5 Nonsense_Mutation p.E675* 0.28 TCGA-BR-8680-01 11 22396342 22396342 T G SLC17A6 Missense_Mutation p.I361M 0.34 tolerated(0.08) probably_damaging(0.912) TCGA-BR-8680-01 11 2609948 2609948 G T KCNQ1 Missense_Mutation p.K419N 0.20 tolerated(0.12) benign(0.197) TCGA-BR-8680-01 11 26700347 26700347 A G SLC5A12 Silent p.D497D 0.33 TCGA-BR-8680-01 11 27016106 27016106 C T FIBIN Silent p.F11F 0.22 TCGA-BR-8680-01 11 27149030 27149030 C A BBOX1 3'UTR 0.29 TCGA-BR-8680-01 11 27679427 27679427 G A BDNF Nonsense_Mutation p.R311* 0.29 TCGA-BR-8680-01 11 27743160 27743160 G A RP11-587D21.4 Intron 0.50 TCGA-BR-8680-01 11 294327 294327 C T ATHL1 Silent p.S623S 0.25 TCGA-BR-8680-01 11 30032125 30032125 T C KCNA4 3'UTR 0.25 TCGA-BR-8680-01 11 30032364 30032364 G T KCNA4 Missense_Mutation p.S621Y 0.29 deleterious_low_confidence(0.01) probably_damaging(0.982) TCGA-BR-8680-01 11 3039178 3039178 A G CARS Missense_Mutation p.F546L 0.33 deleterious(0.05) possibly_damaging(0.62) TCGA-BR-8680-01 11 30439133 30439133 G T MPPED2 Missense_Mutation p.S195Y 0.21 deleterious(0.03) probably_damaging(0.992) TCGA-BR-8680-01 11 31625328 31625328 C A ELP4 Nonsense_Mutation p.S176* 0.33 TCGA-BR-8680-01 11 31648659 31648659 C T ELP4 Missense_Mutation p.S219F 0.25 tolerated(0.71) benign(0.033) TCGA-BR-8680-01 11 31811455 31811455 C A PAX6 3'UTR 0.19 TCGA-BR-8680-01 11 32439194 32439194 A C WT1 Missense_Mutation p.N293K 0.43 deleterious_low_confidence(0) possibly_damaging(0.703) TCGA-BR-8680-01 11 32449551 32449551 C T WT1 Missense_Mutation p.D275N 0.32 deleterious_low_confidence(0.01) probably_damaging(0.987) TCGA-BR-8680-01 11 32635173 32635173 T G CCDC73 Missense_Mutation p.K897N 0.33 deleterious(0) probably_damaging(0.988) TCGA-BR-8680-01 11 32636375 32636375 T G CCDC73 Missense_Mutation p.I497L 0.28 tolerated(0.08) benign(0.341) TCGA-BR-8680-01 11 32637444 32637444 C A CCDC73 Intron 0.32 TCGA-BR-8680-01 11 32657256 32657256 C G CCDC73 Missense_Mutation p.D391H 0.33 tolerated(0.36) possibly_damaging(0.749) TCGA-BR-8680-01 11 32676471 32676471 A G CCDC73 Silent p.C231C 0.41 TCGA-BR-8680-01 11 32954327 32954327 C A QSER1 Missense_Mutation p.S379Y 0.33 deleterious(0.01) possibly_damaging(0.613) TCGA-BR-8680-01 11 32976960 32976960 T C QSER1 Splice_Site p.X1410_splice 0.23 TCGA-BR-8680-01 11 33094125 33094125 A G TCP11L1 Missense_Mutation p.E478G 0.27 tolerated(0.22) possibly_damaging(0.828) TCGA-BR-8680-01 11 33308184 33308184 A G HIPK3 Missense_Mutation p.N75S 0.31 tolerated(0.53) benign(0.001) TCGA-BR-8680-01 11 33308552 33308552 G A HIPK3 Missense_Mutation p.E198K 0.39 deleterious(0.01) possibly_damaging(0.892) TCGA-BR-8680-01 11 33375100 33375100 T C HIPK3 Missense_Mutation p.Y1212H 0.07 tolerated(0.17) probably_damaging(0.998) TCGA-BR-8680-01 11 34098105 34098105 A C CAPRIN1 Splice_Site p.X202_splice 0.33 TCGA-BR-8680-01 11 34163346 34163346 G A NAT10 Silent p.K931K 0.33 TCGA-BR-8680-01 11 34184328 34184328 C T ABTB2 Silent p.T671T 0.27 TCGA-BR-8680-01 11 34670605 34670605 T C EHF Missense_Mutation p.V150A 0.32 tolerated(0.84) benign(0.257) TCGA-BR-8680-01 11 34680177 34680177 C T EHF Silent p.G257G 0.37 TCGA-BR-8680-01 11 35641111 35641111 C A FJX1 Silent p.L309L 0.26 TCGA-BR-8680-01 11 35641181 35641181 G A FJX1 Missense_Mutation p.A333T 0.32 tolerated(0.57) possibly_damaging(0.519) TCGA-BR-8680-01 11 36467895 36467895 G T PRR5L Missense_Mutation p.D164Y 0.41 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 11 3716702 3716702 A G NUP98 Missense_Mutation p.F1382L 0.29 tolerated(0.13) benign(0.243) TCGA-BR-8680-01 11 380147 380147 G A B4GALNT4 Missense_Mutation p.R887Q 0.29 tolerated(0.25) unknown(0) TCGA-BR-8680-01 11 43284436 43284436 T G HNRNPKP3 RNA 0.37 TCGA-BR-8680-01 11 44070029 44070029 C T ACCSL Missense_Mutation p.S148L 0.27 tolerated(0.2) benign(0.013) TCGA-BR-8680-01 11 45267974 45267974 C T SYT13 Silent p.K312K 0.30 TCGA-BR-8680-01 11 45671749 45671749 G A CHST1 Missense_Mutation p.S242L 0.42 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 11 4567211 4567211 T C OR52M1 Missense_Mutation p.I264T 0.32 tolerated(1) benign(0.016) TCGA-BR-8680-01 11 4593454 4593454 C T C11orf40 Missense_Mutation p.A127T 0.23 deleterious_low_confidence(0) possibly_damaging(0.682) TCGA-BR-8680-01 11 4608256 4608256 A G OR52I2 Missense_Mutation p.N72D 0.27 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 11 46105810 46105810 C A PHF21A 5'UTR 0.36 TCGA-BR-8680-01 11 4621672 4621672 G A TRIM68 Missense_Mutation p.A431V 0.25 tolerated(0.09) possibly_damaging(0.859) TCGA-BR-8680-01 11 46665897 46665897 T G ATG13 Missense_Mutation p.F19C 0.35 deleterious(0) probably_damaging(0.989) TCGA-BR-8680-01 11 46776615 46776615 G A CKAP5 Silent p.I1564I 0.30 TCGA-BR-8680-01 11 46804892 46804892 C A CKAP5 Missense_Mutation p.K727N 0.38 deleterious(0) possibly_damaging(0.51) TCGA-BR-8680-01 11 47348331 47348331 C T MADD Nonsense_Mutation p.R1589* 0.33 TCGA-BR-8680-01 11 47397271 47397271 C A SPI1 Missense_Mutation p.D20Y 0.13 deleterious(0) possibly_damaging(0.698) TCGA-BR-8680-01 11 47640313 47640313 G T MTCH2 3'UTR 0.39 TCGA-BR-8680-01 11 4790838 4790838 A G OR51F1 Missense_Mutation p.F104L 0.41 deleterious(0.01) benign(0.162) TCGA-BR-8680-01 11 48188965 48188965 G A PTPRJ 3'UTR 0.35 TCGA-BR-8680-01 11 4870013 4870013 C T OR51S1 Silent p.A142A 0.32 TCGA-BR-8680-01 11 4904076 4904076 G A OR51T1 Missense_Mutation p.G343D 0.33 tolerated(0.22) benign(0.009) TCGA-BR-8680-01 11 49831387 49831387 C T RP11-707M1.1 RNA 0.35 TCGA-BR-8680-01 11 50003388 50003388 A G OR4C12 Missense_Mutation p.V217A 0.22 tolerated_low_confidence(0.07) benign(0.02) TCGA-BR-8680-01 11 5153774 5153774 G T OR52A5 Missense_Mutation p.F33L 0.27 deleterious(0.01) benign(0.015) TCGA-BR-8680-01 11 5173501 5173501 G A OR52A1 Silent p.F33F 0.34 TCGA-BR-8680-01 11 5253984 5253984 A G HBD 3'Flank 0.32 TCGA-BR-8680-01 11 5275593 5275593 G T HBG2 Missense_Mutation p.L82I 0.06 tolerated(0.93) probably_damaging(0.983) TCGA-BR-8680-01 11 5322320 5322320 G T OR51B4 Missense_Mutation p.P286H 0.34 deleterious(0) probably_damaging(0.998) TCGA-BR-8680-01 11 5364321 5364321 C T OR51B5 Missense_Mutation p.G145E 0.30 tolerated(0.05) possibly_damaging(0.814) TCGA-BR-8680-01 11 5373216 5373216 G A OR51B6 Missense_Mutation p.R160H 0.35 tolerated(0.59) benign(0.005) TCGA-BR-8680-01 11 5373534 5373534 T C OR51B6 Missense_Mutation p.V266A 0.36 tolerated(0.75) benign(0.006) TCGA-BR-8680-01 11 5410951 5410951 C T OR51M1 Missense_Mutation p.A108V 0.37 deleterious(0.04) possibly_damaging(0.595) TCGA-BR-8680-01 11 5411514 5411514 C T OR51M1 Missense_Mutation p.P296S 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8680-01 11 55111601 55111601 A C OR4A16 Missense_Mutation p.K309Q 0.31 tolerated_low_confidence(0.54) benign(0.004) TCGA-BR-8680-01 11 5529786 5529786 T G UBQLN3 Missense_Mutation p.N335H 0.23 deleterious(0.03) benign(0.01) TCGA-BR-8680-01 11 55321977 55321977 C G OR4C15 Silent p.V65V 0.27 TCGA-BR-8680-01 11 554059 554059 A G LRRC56 Missense_Mutation p.D471G 0.27 tolerated(0.14) benign(0.012) TCGA-BR-8680-01 11 55406575 55406575 T - OR4P4 Frame_Shift_Del p.F249Lfs*39 0.25 TCGA-BR-8680-01 11 55418468 55418468 C A OR4S2 Missense_Mutation p.S30Y 0.31 deleterious(0) benign(0.221) TCGA-BR-8680-01 11 55433046 55433046 G A OR4C6 Missense_Mutation p.S135N 0.25 tolerated_low_confidence(1) benign(0.005) TCGA-BR-8680-01 11 55541018 55541018 C T OR5D13 Silent p.F35F 0.30 TCGA-BR-8680-01 11 55541337 55541337 C T OR5D13 Missense_Mutation p.L142F 0.29 tolerated(0.06) benign(0.33) TCGA-BR-8680-01 11 55563579 55563579 A G OR5D14 Missense_Mutation p.Y183C 0.28 deleterious(0) probably_damaging(0.987) TCGA-BR-8680-01 11 55595592 55595592 G A OR5L2 Missense_Mutation p.A300T 0.27 tolerated(0.31) benign(0.091) TCGA-BR-8680-01 11 55606387 55606387 A C OR5D16 Missense_Mutation p.N54H 0.29 deleterious(0.01) probably_damaging(0.971) TCGA-BR-8680-01 11 55606573 55606573 C A OR5D16 Missense_Mutation p.L116I 0.37 deleterious(0.03) possibly_damaging(0.841) TCGA-BR-8680-01 11 55658701 55658701 G T TRIM51 Missense_Mutation p.D318Y 0.33 deleterious(0.04) benign(0.015) TCGA-BR-8680-01 11 55659176 55659176 C T TRIM51 3'UTR 0.26 TCGA-BR-8680-01 11 55659278 55659278 A G TRIM51 3'UTR 0.60 TCGA-BR-8680-01 11 55681666 55681666 G A OR5W2 Silent p.L131L 0.33 TCGA-BR-8680-01 11 55735572 55735572 T C OR10AG1 Missense_Mutation p.Y123C 0.34 deleterious(0) probably_damaging(0.923) TCGA-BR-8680-01 11 55735927 55735927 G T OR10AG1 Missense_Mutation p.L5I 0.33 deleterious(0.01) possibly_damaging(0.619) TCGA-BR-8680-01 11 55798656 55798656 G A OR5AS1 Silent p.A254A 0.28 TCGA-BR-8680-01 11 55873182 55873182 C A OR8H2 Missense_Mutation p.L222I 0.30 tolerated(0.14) probably_damaging(0.927) TCGA-BR-8680-01 11 55904703 55904703 G T OR8J3 Missense_Mutation p.F164L 0.32 deleterious(0.02) benign(0.246) TCGA-BR-8680-01 11 55927518 55927518 A C OR8K5 Missense_Mutation p.I92M 0.35 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-BR-8680-01 11 56020510 56020510 A G OR5T3 Missense_Mutation p.T279A 0.29 tolerated(0.24) benign(0.034) TCGA-BR-8680-01 11 56043234 56043234 T G OR5T1 Missense_Mutation p.F40L 0.24 deleterious(0) benign(0.32) TCGA-BR-8680-01 11 56114034 56114034 T G OR8K1 Missense_Mutation p.F174V 0.37 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-BR-8680-01 11 56185686 56185686 T C OR5R1 Missense_Mutation p.Y8C 0.25 tolerated(0.17) benign(0.401) TCGA-BR-8680-01 11 56185699 56185699 C A OR5R1 Missense_Mutation p.V4F 0.23 tolerated(0.71) benign(0.001) TCGA-BR-8680-01 11 56230298 56230298 C A OR5M9 Nonsense_Mutation p.E194* 0.19 TCGA-BR-8680-01 11 56258583 56258583 C A OR5M8 Missense_Mutation p.K88N 0.36 tolerated(0.07) benign(0.003) TCGA-BR-8680-01 11 56310494 56310494 C A OR5M11 Missense_Mutation p.Q80H 0.22 deleterious(0.02) benign(0.027) TCGA-BR-8680-01 11 5631384 5631384 C A TRIM6 Missense_Mutation p.F289L 0.41 tolerated(0.38) benign(0.001) TCGA-BR-8680-01 11 5632597 5632597 C T TRIM6 3'UTR 0.34 TCGA-BR-8680-01 11 56432021 56432021 C T OR5AR1 Missense_Mutation p.P287L 0.34 deleterious(0.02) probably_damaging(0.998) TCGA-BR-8680-01 11 57003635 57003635 C T APLNR Missense_Mutation p.D282N 0.25 tolerated(0.36) benign(0.079) TCGA-BR-8680-01 11 5701382 5701382 A G TRIM5 Missense_Mutation p.V9A 0.24 deleterious(0.02) benign(0.066) TCGA-BR-8680-01 11 57099296 57099296 G A SSRP1 Missense_Mutation p.R357W 0.16 deleterious(0) possibly_damaging(0.496) TCGA-BR-8680-01 11 57175184 57175184 G A SLC43A3 3'UTR 0.22 TCGA-BR-8680-01 11 5730393 5730393 G T TRIM22 Missense_Mutation p.D338Y 0.23 deleterious(0.02) possibly_damaging(0.862) TCGA-BR-8680-01 11 57456029 57456029 A C ZDHHC5 Missense_Mutation p.K92N 0.41 deleterious(0.03) possibly_damaging(0.762) TCGA-BR-8680-01 11 57507817 57507817 C T TMX2 3'UTR 0.38 TCGA-BR-8680-01 11 57576003 57576003 G T CTNND1 Nonsense_Mutation p.E745* 0.33 TCGA-BR-8680-01 11 57886886 57886886 C T OR9I1 Missense_Mutation p.E11K 0.34 deleterious(0.02) benign(0.052) TCGA-BR-8680-01 11 57947716 57947716 C T OR9Q1 Missense_Mutation p.S267L 0.39 tolerated(1) benign(0.012) TCGA-BR-8680-01 11 58035240 58035240 T C OR10W1 Missense_Mutation p.T31A 0.32 tolerated(0.5) benign(0.004) TCGA-BR-8680-01 11 5809177 5809177 C A OR52N1 Missense_Mutation p.M290I 0.67 deleterious(0.01) benign(0.008) TCGA-BR-8680-01 11 58207072 58207072 G T OR5B12 Missense_Mutation p.L185I 0.30 tolerated_low_confidence(0.06) possibly_damaging(0.476) TCGA-BR-8680-01 11 58207297 58207297 T A OR5B12 Missense_Mutation p.S110C 0.37 tolerated_low_confidence(0.19) benign(0.004) TCGA-BR-8680-01 11 58377501 58377501 A G ZFP91 Missense_Mutation p.Q190R 0.07 tolerated_low_confidence(0.1) benign(0.078) TCGA-BR-8680-01 11 58477342 58477342 G A GLYAT Missense_Mutation p.S263F 0.25 tolerated(0.72) benign(0.111) TCGA-BR-8680-01 11 58601854 58601854 A C GLYATL2 3'UTR 0.39 TCGA-BR-8680-01 11 58604789 58604789 A G GLYATL2 Missense_Mutation p.S90P 0.37 tolerated(0.2) benign(0.377) TCGA-BR-8680-01 11 5878752 5878752 G A OR52E8 Missense_Mutation p.L61F 0.21 deleterious(0.01) benign(0.162) TCGA-BR-8680-01 11 58893828 58893828 C A FAM111B 3'UTR 0.33 TCGA-BR-8680-01 11 58920482 58920482 A C FAM111A Missense_Mutation p.E447D 0.35 tolerated(0.14) probably_damaging(0.953) TCGA-BR-8680-01 11 58920784 58920784 C A FAM111A Nonsense_Mutation p.S548* 0.26 TCGA-BR-8680-01 11 58979109 58979109 G T MPEG1 Missense_Mutation p.F410L 0.09 tolerated(0.1) benign(0.025) TCGA-BR-8680-01 11 58979454 58979454 A G MPEG1 Silent p.G295G 0.38 TCGA-BR-8680-01 11 5905807 5905807 C A OR52E4 Missense_Mutation p.S95R 0.31 tolerated(0.08) benign(0.021) TCGA-BR-8680-01 11 5906275 5906275 C A OR52E4 Nonsense_Mutation p.C251* 0.27 TCGA-BR-8680-01 11 59271687 59271687 C T OR4D11 Silent p.F213F 0.34 TCGA-BR-8680-01 11 59282741 59282741 C T OR4D9 Missense_Mutation p.A119V 0.41 deleterious(0) probably_damaging(0.978) TCGA-BR-8680-01 11 59282896 59282896 C T OR4D9 Missense_Mutation p.P171S 0.30 deleterious(0.01) possibly_damaging(0.562) TCGA-BR-8680-01 11 59575228 59575228 T C MRPL16 Missense_Mutation p.I72M 0.38 tolerated(0.75) probably_damaging(1) TCGA-BR-8680-01 11 59603299 59603299 C T GIF Missense_Mutation p.R352H 0.44 tolerated(0.07) benign(0.002) TCGA-BR-8680-01 11 60156897 60156897 C A MS4A7 Missense_Mutation p.S125Y 0.18 deleterious(0.04) possibly_damaging(0.877) TCGA-BR-8680-01 11 60157046 60157046 C T MS4A7 Missense_Mutation p.L175F 0.26 tolerated(0.39) benign(0.2) TCGA-BR-8680-01 11 60164039 60164039 C A MS4A14 5'UTR 0.45 TCGA-BR-8680-01 11 60296873 60296873 C A MS4A13 Missense_Mutation p.F114L 0.28 tolerated(0.63) benign(0.003) TCGA-BR-8680-01 11 60309995 60309995 C T MS4A13 Nonsense_Mutation p.R136* 0.35 TCGA-BR-8680-01 11 6048000 6048000 T G OR56A1 Missense_Mutation p.K312T 0.44 deleterious(0) probably_damaging(0.991) TCGA-BR-8680-01 11 60559761 60559761 G A MS4A10 Silent p.A109A 0.26 TCGA-BR-8680-01 11 60665619 60665619 C T PRPF19 Missense_Mutation p.R422H 0.35 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 11 60708685 60708685 G C SLC15A3 Missense_Mutation p.D395E 0.41 deleterious(0.02) probably_damaging(0.988) TCGA-BR-8680-01 11 61032439 61032439 A G VWCE Missense_Mutation p.C710R 0.34 deleterious(0) probably_damaging(0.984) TCGA-BR-8680-01 11 61118518 61118518 A G CYB561A3 Missense_Mutation p.I234T 0.31 deleterious(0) benign(0.318) TCGA-BR-8680-01 11 61253289 61253289 C T PPP1R32 Missense_Mutation p.S198L 0.28 deleterious(0.01) possibly_damaging(0.545) TCGA-BR-8680-01 11 61558069 61558069 G A TMEM258 Silent p.L3L 0.36 TCGA-BR-8680-01 11 61645986 61645986 C T FADS3 Missense_Mutation p.E249K 0.22 tolerated(0.19) possibly_damaging(0.685) TCGA-BR-8680-01 11 61919280 61919280 G A INCENP Silent p.P863P 0.29 TCGA-BR-8680-01 11 61981334 61981334 C T SCGB2A1 3'UTR 0.42 TCGA-BR-8680-01 11 62362466 62362466 G A MTA2 Silent p.I520I 0.29 TCGA-BR-8680-01 11 62402472 62402472 C T GANAB Silent p.R127R 0.44 TCGA-BR-8680-01 11 62433962 62433962 C A METTL12 Missense_Mutation p.F54L 0.31 deleterious(0) probably_damaging(0.97) TCGA-BR-8680-01 11 62484514 62484514 C T HNRNPUL2 Missense_Mutation p.R643Q 0.34 tolerated(0.14) benign(0.361) TCGA-BR-8680-01 11 62564692 62564692 C A NXF1 Nonsense_Mutation p.E381* 0.36 TCGA-BR-8680-01 11 62594857 62594857 C A STX5 Missense_Mutation p.D104Y 0.26 deleterious(0) probably_damaging(0.998) TCGA-BR-8680-01 11 6261346 6261346 C T CNGA4 Missense_Mutation p.R108C 0.33 deleterious(0.02) probably_damaging(0.96) TCGA-BR-8680-01 11 6290930 6290930 C T CCKBR Silent p.Y61Y 0.30 TCGA-BR-8680-01 11 6291065 6291065 T G CCKBR Silent p.A106A 0.25 TCGA-BR-8680-01 11 63137605 63137605 T G SLC22A9 Missense_Mutation p.I26S 0.28 deleterious(0.04) benign(0.133) TCGA-BR-8680-01 11 63313629 63313629 G A RARRES3 Silent p.K132K 0.40 TCGA-BR-8680-01 11 63487738 63487738 G A RTN3 Silent p.T588T 0.31 TCGA-BR-8680-01 11 63667549 63667549 C T MARK2 Silent p.S245S 0.37 TCGA-BR-8680-01 11 63961954 63961954 G T STIP1 Missense_Mutation p.R122I 0.28 tolerated(0.15) benign(0.017) TCGA-BR-8680-01 11 64029069 64029069 C T PLCB3 Silent p.F615F 0.39 TCGA-BR-8680-01 11 6412632 6412632 C T SMPD1 Missense_Mutation p.R113C 0.24 deleterious(0.02) possibly_damaging(0.761) TCGA-BR-8680-01 11 6414487 6414487 G A SMPD1 Missense_Mutation p.R378H 0.40 deleterious(0) probably_damaging(0.988) TCGA-BR-8680-01 11 6415864 6415864 T G SMPD1 3'UTR 0.28 TCGA-BR-8680-01 11 64398002 64398002 T C NRXN2 Missense_Mutation p.D1210G 0.37 deleterious(0) probably_damaging(0.968) TCGA-BR-8680-01 11 64536783 64536783 C T SF1 Missense_Mutation p.E356K 0.35 deleterious(0.05) probably_damaging(0.967) TCGA-BR-8680-01 11 64851525 64851525 A G CDCA5 5'UTR 0.46 TCGA-BR-8680-01 11 64883942 64883942 C A ZNHIT2 Missense_Mutation p.R395I 0.39 deleterious(0.01) benign(0.206) TCGA-BR-8680-01 11 6500092 6500092 C T ARFIP2 Missense_Mutation p.R138H 0.26 deleterious(0) possibly_damaging(0.794) TCGA-BR-8680-01 11 65046230 65046230 G A POLA2 Missense_Mutation p.R164Q 0.30 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 11 65109022 65109022 C T DPF2 Nonsense_Mutation p.R152* 0.19 TCGA-BR-8680-01 11 65269454 65269454 G A MALAT1 RNA 0.44 TCGA-BR-8680-01 11 65273714 65273714 C A MALAT1 RNA 0.37 TCGA-BR-8680-01 11 65350612 65350612 G T EHBP1L1 Missense_Mutation p.E823D 0.34 tolerated(0.12) benign(0.006) TCGA-BR-8680-01 11 65380788 65380788 C T MAP3K11 Missense_Mutation p.R147H 0.41 deleterious(0.04) probably_damaging(0.991) TCGA-BR-8680-01 11 6540971 6540971 G A DNHD1 Missense_Mutation p.A512T 0.26 benign(0.006) TCGA-BR-8680-01 11 65745317 65745317 G A SART1 Missense_Mutation p.D707N 0.34 tolerated(0.59) possibly_damaging(0.7) TCGA-BR-8680-01 11 65780874 65780874 A C CST6 3'UTR 0.32 TCGA-BR-8680-01 11 65826323 65826323 G A SF3B2 Missense_Mutation p.R330Q 0.26 tolerated(0.08) probably_damaging(0.992) TCGA-BR-8680-01 11 65830545 65830545 G A SF3B2 Silent p.P681P 0.27 TCGA-BR-8680-01 11 6588290 6588290 C T DNHD1 Nonsense_Mutation p.R3851* 0.36 TCGA-BR-8680-01 11 6591310 6591310 C G DNHD1 Missense_Mutation p.A4312G 0.21 benign(0.245) TCGA-BR-8680-01 11 66136541 66136541 G A SLC29A2 Silent p.C135C 0.33 TCGA-BR-8680-01 11 66192494 66192494 A C NPAS4 Missense_Mutation p.E711D 0.14 tolerated(0.29) benign(0.078) TCGA-BR-8680-01 11 66334775 66334775 C T CTSF Missense_Mutation p.M183I 0.27 tolerated(0.2) benign(0.003) TCGA-BR-8680-01 11 66482842 66482842 G A SPTBN2 Missense_Mutation p.R112W 0.43 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 11 66807670 66807670 C A SYT12 Missense_Mutation p.S206Y 0.35 deleterious(0) probably_damaging(0.956) TCGA-BR-8680-01 11 67187257 67187257 G A CARNS1 Missense_Mutation p.R354Q 0.36 deleterious(0) probably_damaging(0.954) TCGA-BR-8680-01 11 67926444 67926444 G T SUV420H1 Missense_Mutation p.H457N 0.37 tolerated(0.09) benign(0.06) TCGA-BR-8680-01 11 6816380 6816380 G T OR6A2 Missense_Mutation p.S187Y 0.38 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 11 68478501 68478501 G A MTL5 Missense_Mutation p.S392F 0.26 deleterious(0.01) probably_damaging(0.982) TCGA-BR-8680-01 11 68512569 68512569 T C MTL5 Missense_Mutation p.Q214R 0.28 tolerated(0.06) benign(0.06) TCGA-BR-8680-01 11 68579981 68579981 C T CPT1A Missense_Mutation p.V69M 0.28 tolerated(0.08) possibly_damaging(0.464) TCGA-BR-8680-01 11 68663994 68663994 G A MRPL21 Nonsense_Mutation p.R129* 0.28 TCGA-BR-8680-01 11 6867289 6867289 G A OR10A5 Missense_Mutation p.A126T 0.32 deleterious(0) possibly_damaging(0.589) TCGA-BR-8680-01 11 68676003 68676003 G A IGHMBP2 Missense_Mutation p.A151T 0.40 tolerated(0.07) benign(0.226) TCGA-BR-8680-01 11 68747543 68747543 C T MRGPRD Missense_Mutation p.E305K 0.30 deleterious(0.01) possibly_damaging(0.885) TCGA-BR-8680-01 11 69063584 69063584 G T MYEOV Nonsense_Mutation p.E223* 0.41 TCGA-BR-8680-01 11 6977697 6977697 A G ZNF215 Missense_Mutation p.K497E 0.28 deleterious(0.01) possibly_damaging(0.793) TCGA-BR-8680-01 11 69978067 69978067 G A ANO1 Silent p.P380P 0.57 TCGA-BR-8680-01 11 70031744 70031744 C A ANO1 Silent p.I879I 0.35 TCGA-BR-8680-01 11 70031792 70031792 C T ANO1 Silent p.I895I 0.36 TCGA-BR-8680-01 11 7021924 7021924 G T ZNF214 Missense_Mutation p.F330L 0.31 tolerated(1) benign(0) TCGA-BR-8680-01 11 70221149 70221149 G A PPFIA1 Missense_Mutation p.D1089N 0.21 deleterious(0) probably_damaging(0.983) TCGA-BR-8680-01 11 70507809 70507809 G A SHANK2 Intron 0.28 TCGA-BR-8680-01 11 7063729 7063729 G T NLRP14 Missense_Mutation p.D158Y 0.27 deleterious(0.03) benign(0.316) TCGA-BR-8680-01 11 71150111 71150111 G T DHCR7 Missense_Mutation p.F215L 0.27 tolerated(0.33) benign(0.012) TCGA-BR-8680-01 11 71238913 71238913 C T KRTAP5-7 3'UTR 0.33 TCGA-BR-8680-01 11 71249203 71249203 C T KRTAP5-8 Silent p.C34C 0.28 TCGA-BR-8680-01 11 71249836 71249836 C T KRTAP5-8 3'UTR 0.33 TCGA-BR-8680-01 11 71712802 71712802 T C IL18BP Intron 0.29 TCGA-BR-8680-01 11 71720125 71720125 C T NUMA1 Missense_Mutation p.R1649Q 0.35 probably_damaging(0.999) TCGA-BR-8680-01 11 71726580 71726580 C T NUMA1 Missense_Mutation p.A657T 0.31 benign(0.072) TCGA-BR-8680-01 11 71847003 71847003 A G FOLR3 Missense_Mutation p.D2G 0.29 tolerated(0.56) unknown(0) TCGA-BR-8680-01 11 71929627 71929627 A G FOLR2 5'UTR 0.29 TCGA-BR-8680-01 11 72290417 72290417 C T PDE2A Missense_Mutation p.R756H 0.26 deleterious(0) probably_damaging(0.972) TCGA-BR-8680-01 11 73602177 73602177 T C PAAF1 Silent p.C71C 0.20 TCGA-BR-8680-01 11 73814566 73814566 A T C2CD3 Missense_Mutation p.N730K 0.26 tolerated(0.62) benign(0.009) TCGA-BR-8680-01 11 7439350 7439350 A G SYT9 Missense_Mutation p.D443G 0.37 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 11 74521240 74521240 A C RNF169 Missense_Mutation p.E196D 0.24 deleterious(0.04) probably_damaging(0.978) TCGA-BR-8680-01 11 74563045 74563045 G A XRRA1 Missense_Mutation p.A410V 0.39 tolerated(0.15) benign(0.215) TCGA-BR-8680-01 11 74641361 74641361 T G XRRA1 Missense_Mutation p.E128D 0.27 deleterious(0) probably_damaging(0.996) TCGA-BR-8680-01 11 74913973 74913973 G A SLCO2B1 Silent p.L597L 0.34 TCGA-BR-8680-01 11 75439872 75439872 G T MOGAT2 Missense_Mutation p.D230Y 0.35 deleterious(0) probably_damaging(0.928) TCGA-BR-8680-01 11 76726121 76726121 T G ACER3 Missense_Mutation p.L187V 0.26 tolerated(0.24) benign(0.012) TCGA-BR-8680-01 11 76900472 76900472 C A MYO7A Missense_Mutation p.S1196Y 0.36 deleterious(0) probably_damaging(0.956) TCGA-BR-8680-01 11 77090406 77090406 G A PAK1 Missense_Mutation p.L107F 0.27 deleterious(0.02) probably_damaging(1) TCGA-BR-8680-01 11 77412131 77412131 C A RSF1 Nonsense_Mutation p.E715* 0.37 TCGA-BR-8680-01 11 77412799 77412799 G T RSF1 Missense_Mutation p.S492Y 0.32 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-BR-8680-01 11 77413600 77413600 G T RSF1 Intron 0.19 TCGA-BR-8680-01 11 77635653 77635653 C T INTS4 Intron 0.32 TCGA-BR-8680-01 11 77727688 77727688 C A KCTD14 Missense_Mutation p.R240I 0.36 tolerated(0.29) benign(0.032) TCGA-BR-8680-01 11 77911746 77911746 G A USP35 Silent p.S363S 0.44 TCGA-BR-8680-01 11 77920554 77920554 G A USP35 Silent p.S551S 0.32 TCGA-BR-8680-01 11 78369748 78369748 C A TENM4 Missense_Mutation p.K2555N 0.40 tolerated(0.24) benign(0) TCGA-BR-8680-01 11 78412982 78412982 C T TENM4 Missense_Mutation p.R1559Q 0.20 deleterious(0.01) benign(0.086) TCGA-BR-8680-01 11 78413045 78413045 G A TENM4 Missense_Mutation p.T1538I 0.38 tolerated(0.14) benign(0.025) TCGA-BR-8680-01 11 78440647 78440647 C T TENM4 Silent p.R1060R 0.32 TCGA-BR-8680-01 11 7949332 7949332 C T OR10A6 Missense_Mutation p.R293Q 0.35 deleterious(0) benign(0.119) TCGA-BR-8680-01 11 7949936 7949936 T G OR10A6 Missense_Mutation p.I92L 0.35 deleterious(0.01) possibly_damaging(0.458) TCGA-BR-8680-01 11 82877043 82877043 G A PCF11 Silent p.S368S 0.29 TCGA-BR-8680-01 11 82878277 82878277 G A PCF11 Missense_Mutation p.R643Q 0.39 deleterious(0.04) benign(0.187) TCGA-BR-8680-01 11 82936079 82936079 G T ANKRD42 Missense_Mutation p.D229Y 0.25 tolerated(0.38) benign(0.006) TCGA-BR-8680-01 11 8413955 8413955 C T STK33 3'UTR 0.38 TCGA-BR-8680-01 11 8496386 8496386 C A STK33 Missense_Mutation p.D23Y 0.31 deleterious_low_confidence(0.02) possibly_damaging(0.472) TCGA-BR-8680-01 11 84996399 84996399 T G DLG2 Missense_Mutation p.E17D 0.22 deleterious_low_confidence(0.01) benign(0.023) TCGA-BR-8680-01 11 85365183 85365183 C T TMEM126A Nonsense_Mutation p.R55* 0.30 TCGA-BR-8680-01 11 85406128 85406128 C T SYTL2 3'UTR 0.31 TCGA-BR-8680-01 11 85436442 85436442 G T SYTL2 Missense_Mutation p.S353Y 0.33 tolerated(0.19) probably_damaging(0.956) TCGA-BR-8680-01 11 86947710 86947710 T C TMEM135 Missense_Mutation p.Y165H 0.29 tolerated(0.12) benign(0.012) TCGA-BR-8680-01 11 8715670 8715670 T G ST5 Missense_Mutation p.K1129N 0.23 deleterious(0) possibly_damaging(0.742) TCGA-BR-8680-01 11 8724176 8724176 C T ST5 Missense_Mutation p.R888Q 0.35 tolerated(0.24) benign(0.116) TCGA-BR-8680-01 11 8739286 8739286 A G ST5 Splice_Site p.X543_splice 0.27 TCGA-BR-8680-01 11 88300351 88300351 G A GRM5 Missense_Mutation p.R834C 0.43 deleterious(0) probably_damaging(0.998) TCGA-BR-8680-01 11 88911375 88911375 A G TYR Missense_Mutation p.Y85C 0.32 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 11 89405123 89405123 G T FOLH1B RNA 0.34 TCGA-BR-8680-01 11 89537423 89537423 T C TRIM49 Missense_Mutation p.K72R 0.20 deleterious(0.01) benign(0.08) TCGA-BR-8680-01 11 9007350 9007350 G T NRIP3 Missense_Mutation p.S157Y 0.35 tolerated(0.2) possibly_damaging(0.73) TCGA-BR-8680-01 11 9051490 9051490 G T SCUBE2 Missense_Mutation p.S758Y 0.28 deleterious(0.01) possibly_damaging(0.747) TCGA-BR-8680-01 11 9166618 9166618 C A DENND5A Missense_Mutation p.D1016Y 0.24 deleterious(0) probably_damaging(0.997) TCGA-BR-8680-01 11 92086173 92086173 G A FAT3 Missense_Mutation p.E299K 0.41 benign(0.212) TCGA-BR-8680-01 11 92086393 92086393 T C FAT3 Missense_Mutation p.V372A 0.49 benign(0.003) TCGA-BR-8680-01 11 92087946 92087946 G A FAT3 Missense_Mutation p.D890N 0.33 benign(0.39) TCGA-BR-8680-01 11 92507255 92507255 T C FAT3 Missense_Mutation p.I1415T 0.45 possibly_damaging(0.893) TCGA-BR-8680-01 11 92532760 92532760 C A FAT3 Missense_Mutation p.S2194Y 0.30 benign(0.052) TCGA-BR-8680-01 11 92577811 92577811 G A FAT3 Missense_Mutation p.D3760N 0.44 benign(0.285) TCGA-BR-8680-01 11 93800819 93800819 C T HEPHL1 Silent p.V322V 0.25 TCGA-BR-8680-01 11 94554964 94554964 G A AMOTL1 Missense_Mutation p.D464N 0.27 deleterious(0) possibly_damaging(0.783) TCGA-BR-8680-01 11 94730523 94730523 T G KDM4D 5'UTR 0.35 TCGA-BR-8680-01 11 9522663 9522663 C T ZNF143 Silent p.F331F 0.26 TCGA-BR-8680-01 11 95512015 95512015 C T FAM76B Missense_Mutation p.D267N 0.29 deleterious(0) possibly_damaging(0.861) TCGA-BR-8680-01 11 95512122 95512122 C T FAM76B Splice_Site p.X231_splice 0.41 TCGA-BR-8680-01 11 95516362 95516362 C A FAM76B Nonsense_Mutation p.E144* 0.33 TCGA-BR-8680-01 12 10005897 10005897 A G CLEC2B 3'UTR 0.39 TCGA-BR-8680-01 12 100711646 100711646 G T SCYL2 Missense_Mutation p.K446N 0.39 deleterious(0.02) benign(0.142) TCGA-BR-8680-01 12 100732689 100732689 C A SCYL2 Silent p.L843L 0.35 TCGA-BR-8680-01 12 100806591 100806591 G A SLC17A8 Silent p.S410S 0.29 TCGA-BR-8680-01 12 10131996 10131996 G A CLEC12A Silent p.E94E 0.26 TCGA-BR-8680-01 12 101381342 101381342 C T ANO4 Missense_Mutation p.R175W 0.32 tolerated(0.24) possibly_damaging(0.761) TCGA-BR-8680-01 12 10145803 10145803 T C CLEC1B Missense_Mutation p.N210S 0.35 tolerated(0.16) benign(0.019) TCGA-BR-8680-01 12 10145850 10145850 A C CLEC1B Missense_Mutation p.N194K 0.30 deleterious(0.04) benign(0.238) TCGA-BR-8680-01 12 101870608 101870608 T G SPIC Intron 0.37 TCGA-BR-8680-01 12 102036355 102036355 A C MYBPC1 Missense_Mutation p.K250T 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-BR-8680-01 12 102055019 102055019 G A MYBPC1 Missense_Mutation p.D646N 0.46 tolerated(0.05) probably_damaging(1) TCGA-BR-8680-01 12 102313940 102313940 T C DRAM1 Silent p.G211G 0.37 TCGA-BR-8680-01 12 10233922 10233922 G T CLEC1A Missense_Mutation p.S102Y 0.31 tolerated(0.19) probably_damaging(0.989) TCGA-BR-8680-01 12 10282621 10282621 C T CLEC7A Missense_Mutation p.D21N 0.17 tolerated(1) benign(0) TCGA-BR-8680-01 12 103240677 103240677 G A PAH Missense_Mutation p.A322V 0.34 deleterious(0) probably_damaging(0.996) TCGA-BR-8680-01 12 10339104 10339104 A C TMEM52B Missense_Mutation p.N55H 0.34 tolerated(0.65) possibly_damaging(0.765) TCGA-BR-8680-01 12 10342754 10342754 T G TMEM52B 3'UTR 0.36 TCGA-BR-8680-01 12 10374410 10374410 C A GABARAPL1 Missense_Mutation p.L105M 0.32 deleterious(0.03) possibly_damaging(0.88) TCGA-BR-8680-01 12 103984697 103984697 C A STAB2 Missense_Mutation p.S35Y 0.34 deleterious(0.01) possibly_damaging(0.549) TCGA-BR-8680-01 12 104049338 104049338 C T STAB2 Silent p.L571L 0.39 TCGA-BR-8680-01 12 104089398 104089398 A G STAB2 Missense_Mutation p.D1149G 0.27 deleterious(0.04) benign(0.021) TCGA-BR-8680-01 12 104098388 104098388 C A STAB2 Missense_Mutation p.S1299Y 0.26 deleterious(0.02) benign(0.081) TCGA-BR-8680-01 12 104136216 104136216 A G STAB2 Missense_Mutation p.N1972S 0.29 tolerated(0.07) benign(0.118) TCGA-BR-8680-01 12 104326616 104326616 G T HSP90B1 Nonsense_Mutation p.E103* 0.32 TCGA-BR-8680-01 12 104697977 104697977 G A EID3 Missense_Mutation p.D89N 0.36 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 12 105462629 105462629 A C ALDH1L2 Missense_Mutation p.F154L 0.30 tolerated_low_confidence(0.09) benign(0.074) TCGA-BR-8680-01 12 105543428 105543428 C A KIAA1033 Missense_Mutation p.F850L 0.26 deleterious(0.01) benign(0.356) TCGA-BR-8680-01 12 105560761 105560761 T C KIAA1033 3'UTR 0.22 TCGA-BR-8680-01 12 10560183 10560183 G T KLRC4 3'UTR 0.40 TCGA-BR-8680-01 12 10599141 10599141 G A KLRC1 3'UTR 0.41 TCGA-BR-8680-01 12 10603780 10603780 C A KLRC1 5'UTR 0.53 TCGA-BR-8680-01 12 106460770 106460770 C T NUAK1 Missense_Mutation p.R599H 0.34 deleterious(0) probably_damaging(0.998) TCGA-BR-8680-01 12 106461428 106461428 A C NUAK1 Missense_Mutation p.S380A 0.25 tolerated(0.63) benign(0.005) TCGA-BR-8680-01 12 107078653 107078653 C T RFX4 Intron 0.44 TCGA-BR-8680-01 12 107372416 107372416 T C MTERFD3 Missense_Mutation p.Y26C 0.29 tolerated(0.18) benign(0.007) TCGA-BR-8680-01 12 107395696 107395696 A G CRY1 Silent p.P147P 0.31 TCGA-BR-8680-01 12 108079644 108079644 T C PWP1 5'UTR 0.25 TCGA-BR-8680-01 12 108128239 108128239 C T PRDM4 Silent p.K718K 0.31 TCGA-BR-8680-01 12 108168938 108168938 C T ASCL4 5'UTR 0.28 TCGA-BR-8680-01 12 108626627 108626627 T G WSCD2 Missense_Mutation p.F367V 0.37 deleterious(0.03) benign(0.011) TCGA-BR-8680-01 12 109283296 109283296 G T DAO Nonsense_Mutation p.E121* 0.33 TCGA-BR-8680-01 12 10958754 10958754 G T TAS2R8 Missense_Mutation p.L276I 0.30 tolerated(1) benign(0.07) TCGA-BR-8680-01 12 109613808 109613808 A G ACACB Missense_Mutation p.D430G 0.23 tolerated(0.37) benign(0.003) TCGA-BR-8680-01 12 109613968 109613968 G T ACACB Missense_Mutation p.R446I 0.31 tolerated(0.06) possibly_damaging(0.529) TCGA-BR-8680-01 12 109684234 109684234 A G ACACB Missense_Mutation p.D1851G 0.31 deleterious(0.02) probably_damaging(0.915) TCGA-BR-8680-01 12 109719237 109719237 C T FOXN4 Silent p.P423P 0.28 TCGA-BR-8680-01 12 10999769 10999769 G A PRR4 Missense_Mutation p.R100C 0.32 deleterious_low_confidence(0.04) benign(0.193) TCGA-BR-8680-01 12 110252352 110252352 C T TRPV4 Missense_Mutation p.D84N 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.796) TCGA-BR-8680-01 12 110461908 110461908 C T ANKRD13A Silent p.Y264Y 0.27 TCGA-BR-8680-01 12 110466289 110466289 C A ANKRD13A Intron 0.38 TCGA-BR-8680-01 12 110780120 110780120 G A ATP2A2 Missense_Mutation p.A729T 0.29 deleterious(0.01) probably_damaging(0.966) TCGA-BR-8680-01 12 110788149 110788149 C T ATP2A2 3'Flank 0.28 TCGA-BR-8680-01 12 111352028 111352028 A C MYL2 Missense_Mutation p.F79C 0.40 deleterious(0) probably_damaging(0.954) TCGA-BR-8680-01 12 111356915 111356915 A C MYL2 Missense_Mutation p.F29C 0.53 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 12 111749952 111749952 C T CUX2 Missense_Mutation p.A650V 0.29 deleterious(0) probably_damaging(0.937) TCGA-BR-8680-01 12 112667668 112667668 A C HECTD4 Missense_Mutation p.L1972R 0.26 possibly_damaging(0.841) TCGA-BR-8680-01 12 112721041 112721041 G A HECTD4 Silent p.G323G 0.36 TCGA-BR-8680-01 12 112939971 112939971 A C PTPN11 Missense_Mutation p.E541D 0.33 tolerated(0.2) benign(0.159) TCGA-BR-8680-01 12 113346601 113346601 C T OAS1 Silent p.F147F 0.31 TCGA-BR-8680-01 12 113384669 113384669 G A OAS3 Missense_Mutation p.R253Q 0.36 tolerated(0.18) benign(0.18) TCGA-BR-8680-01 12 113416560 113416560 A G OAS2 Silent p.E49E 0.20 TCGA-BR-8680-01 12 113812324 113812324 G A PLBD2 Missense_Mutation p.E197K 0.47 tolerated(0.51) benign(0.011) TCGA-BR-8680-01 12 114832669 114832669 C T TBX5 Silent p.Q180Q 0.27 TCGA-BR-8680-01 12 11546911 11546911 C T PRB2 Missense_Mutation p.G34E 0.35 deleterious_low_confidence(0.02) unknown(0) TCGA-BR-8680-01 12 116425055 116425055 G A MED13L Missense_Mutation p.R1325C 0.44 deleterious(0) unknown(0) TCGA-BR-8680-01 12 116972465 116972465 G A LINC00173 RNA 0.26 TCGA-BR-8680-01 12 117685282 117685282 G A NOS1 Silent p.C932C 0.29 TCGA-BR-8680-01 12 117691546 117691546 G A NOS1 Nonsense_Mutation p.R883* 0.33 TCGA-BR-8680-01 12 117723132 117723132 G A NOS1 Silent p.F432F 0.30 TCGA-BR-8680-01 12 118467596 118467596 C T RFC5 Nonsense_Mutation p.R298* 0.28 TCGA-BR-8680-01 12 118588668 118588668 G A TAOK3 3'UTR 0.60 TCGA-BR-8680-01 12 118627762 118627762 A C TAOK3 Intron 0.27 TCGA-BR-8680-01 12 118828948 118828948 A C SUDS3 Silent p.R126R 0.09 TCGA-BR-8680-01 12 119943093 119943093 G T CCDC60 Nonsense_Mutation p.E290* 0.33 TCGA-BR-8680-01 12 120118142 120118142 C T PRKAB1 3'UTR 0.32 TCGA-BR-8680-01 12 120128041 120128041 C T CIT Missense_Mutation p.R2034Q 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.844) TCGA-BR-8680-01 12 120128042 120128042 G T CIT Silent p.R2034R 0.25 TCGA-BR-8680-01 12 120204980 120204980 C T CIT Missense_Mutation p.E739K 0.31 tolerated(0.12) probably_damaging(0.983) TCGA-BR-8680-01 12 12044114 12044114 C A ETV6 3'UTR 0.27 TCGA-BR-8680-01 12 120795629 120795629 T C MSI1 Missense_Mutation p.N175S 0.33 deleterious(0.03) probably_damaging(0.954) TCGA-BR-8680-01 12 121416565 121416565 C T HNF1A 5'UTR 0.40 TCGA-BR-8680-01 12 121458569 121458569 G A OASL Missense_Mutation p.A447V 0.33 tolerated(0.12) benign(0.09) TCGA-BR-8680-01 12 121666569 121666569 C T P2RX4 Missense_Mutation p.S232L 0.35 deleterious(0.02) benign(0.311) TCGA-BR-8680-01 12 121666584 121666584 C T P2RX4 Missense_Mutation p.A237V 0.32 tolerated(0.21) possibly_damaging(0.67) TCGA-BR-8680-01 12 122018824 122018824 A G KDM2B 5'UTR 0.25 TCGA-BR-8680-01 12 122097145 122097145 T C MORN3 Silent p.G85G 0.32 TCGA-BR-8680-01 12 122685454 122685454 G A LRRC43 Silent p.L594L 0.30 TCGA-BR-8680-01 12 122748207 122748207 G A VPS33A Missense_Mutation p.R70C 0.31 tolerated(0.17) benign(0.035) TCGA-BR-8680-01 12 122757586 122757586 A C CLIP1 Missense_Mutation p.F1385V 0.21 deleterious(0) probably_damaging(0.972) TCGA-BR-8680-01 12 123001843 123001843 G A RSRC2 Missense_Mutation p.S178F 0.36 deleterious_low_confidence(0.03) unknown(0) TCGA-BR-8680-01 12 123075984 123075984 G A KNTC1 Missense_Mutation p.R1410H 0.33 deleterious(0.02) probably_damaging(0.987) TCGA-BR-8680-01 12 123097759 123097759 A C KNTC1 Missense_Mutation p.K1908T 0.37 tolerated(0.14) probably_damaging(0.997) TCGA-BR-8680-01 12 123186857 123186857 C T HCAR2 Missense_Mutation p.R325H 0.12 deleterious(0.05) benign(0.336) TCGA-BR-8680-01 12 123200148 123200148 C A HCAR3 Missense_Mutation p.E379D 0.31 tolerated_low_confidence(0.54) benign(0) TCGA-BR-8680-01 12 123200311 123200311 C T HCAR3 Missense_Mutation p.R325H 0.24 deleterious(0.02) possibly_damaging(0.706) TCGA-BR-8680-01 12 123333139 123333139 G A HIP1R Missense_Mutation p.R95Q 0.38 deleterious(0.02) probably_damaging(1) TCGA-BR-8680-01 12 123649915 123649915 C A MPHOSPH9 Nonsense_Mutation p.E749* 0.34 TCGA-BR-8680-01 12 123741711 123741711 T G C12orf65 3'UTR 0.40 TCGA-BR-8680-01 12 123984017 123984017 T G RILPL1 Missense_Mutation p.E176A 0.40 deleterious(0) probably_damaging(0.998) TCGA-BR-8680-01 12 124074954 124074954 G A TMED2 Missense_Mutation p.E147K 0.35 deleterious(0.03) benign(0.159) TCGA-BR-8680-01 12 124257443 124257443 G T DNAH10 Missense_Mutation p.E92D 0.39 benign(0.007) TCGA-BR-8680-01 12 124323173 124323173 C T DNAH10 Silent p.D1573D 0.31 TCGA-BR-8680-01 12 124330340 124330340 G A DNAH10 Missense_Mutation p.D1734N 0.25 benign(0.177) TCGA-BR-8680-01 12 124333363 124333363 C A DNAH10 Silent p.L1894L 0.28 TCGA-BR-8680-01 12 124345647 124345647 G T DNAH10 Missense_Mutation p.D2162Y 0.11 probably_damaging(0.999) TCGA-BR-8680-01 12 124377783 124377783 T G DNAH10 Missense_Mutation p.I2882S 0.46 benign(0.101) TCGA-BR-8680-01 12 124377848 124377848 C T DNAH10 Silent p.L2904L 0.40 TCGA-BR-8680-01 12 124870323 124870323 C T NCOR2 Missense_Mutation p.D663N 0.36 unknown(0) TCGA-BR-8680-01 12 125561052 125561052 A G AACS Missense_Mutation p.K85E 0.06 tolerated(0.29) benign(0.035) TCGA-BR-8680-01 12 125613907 125613907 G A AACS Missense_Mutation p.E484K 0.33 deleterious(0) possibly_damaging(0.627) TCGA-BR-8680-01 12 125626770 125626770 T G AACS Missense_Mutation p.F672V 0.29 deleterious_low_confidence(0) possibly_damaging(0.721) TCGA-BR-8680-01 12 12630251 12630251 C T DUSP16 Missense_Mutation p.R505Q 0.28 tolerated(0.07) benign(0.372) TCGA-BR-8680-01 12 12814131 12814131 G T GPR19 3'UTR 0.45 TCGA-BR-8680-01 12 12815396 12815396 C A GPR19 5'UTR 0.40 TCGA-BR-8680-01 12 1289715 1289715 C A ERC1 Missense_Mutation p.L583I 0.32 deleterious(0.02) possibly_damaging(0.854) TCGA-BR-8680-01 12 130648529 130648529 G A FZD10 Missense_Mutation p.E348K 0.43 deleterious(0.04) probably_damaging(0.997) TCGA-BR-8680-01 12 13068773 13068773 G A GPRC5A 3'UTR 0.44 TCGA-BR-8680-01 12 131297517 131297517 G A STX2 Nonsense_Mutation p.R89* 0.32 TCGA-BR-8680-01 12 131359262 131359262 G A RAN Missense_Mutation p.R140Q 0.26 tolerated(0.06) benign(0.112) TCGA-BR-8680-01 12 132416843 132416843 G A PUS1 Missense_Mutation p.A143T 0.40 deleterious(0) probably_damaging(0.996) TCGA-BR-8680-01 12 132464278 132464278 A C EP400 Missense_Mutation p.S459R 0.21 unknown(0) TCGA-BR-8680-01 12 132510285 132510285 G A EP400 Silent p.V1650V 0.32 TCGA-BR-8680-01 12 133209378 133209378 T C POLE Missense_Mutation p.Y2003C 0.30 deleterious(0) probably_damaging(0.977) TCGA-BR-8680-01 12 133250289 133250289 C A POLE Missense_Mutation p.V411L 0.31 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 12 133311027 133311027 G T ANKLE2 Missense_Mutation p.A612D 0.27 tolerated(0.07) benign(0.408) TCGA-BR-8680-01 12 14577784 14577784 A C ATF7IP Missense_Mutation p.K312T 0.39 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-BR-8680-01 12 14651068 14651068 C A ATF7IP 3'UTR 0.34 TCGA-BR-8680-01 12 14976593 14976593 G T C12orf60 Missense_Mutation p.A242S 0.18 tolerated(0.32) benign(0.018) TCGA-BR-8680-01 12 14995923 14995923 C T ART4 Missense_Mutation p.R42K 0.42 tolerated(0.97) benign(0.015) TCGA-BR-8680-01 12 15073929 15073929 G A ERP27 Silent p.A129A 0.34 TCGA-BR-8680-01 12 15087795 15087795 G A ERP27 Missense_Mutation p.R110C 0.33 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 12 15103555 15103555 G A ARHGDIB Missense_Mutation p.S31F 0.28 deleterious(0) probably_damaging(0.928) TCGA-BR-8680-01 12 15793747 15793747 G A EPS8 Nonsense_Mutation p.R571* 0.37 TCGA-BR-8680-01 12 18435015 18435015 A C PIK3C2G 5'UTR 0.28 TCGA-BR-8680-01 12 18552625 18552625 T G PIK3C2G Missense_Mutation p.F679C 0.31 deleterious(0.04) probably_damaging(0.951) TCGA-BR-8680-01 12 1943890 1943890 G A LRTM2 3'UTR 0.32 TCGA-BR-8680-01 12 2058449 2058449 A G DCP1B Missense_Mutation p.S526P 0.27 tolerated(0.09) benign(0.025) TCGA-BR-8680-01 12 21033812 21033812 T C SLCO1B3 Missense_Mutation p.V452A 0.33 tolerated(0.71) benign(0.002) TCGA-BR-8680-01 12 21355460 21355460 T C SLCO1B1 Missense_Mutation p.F391L 0.33 tolerated(0.11) benign(0.075) TCGA-BR-8680-01 12 21392082 21392082 T G SLCO1B1 Missense_Mutation p.F679V 0.34 tolerated(0.22) benign(0.009) TCGA-BR-8680-01 12 21602535 21602535 G A PYROXD1 Silent p.K108K 0.42 TCGA-BR-8680-01 12 21621698 21621698 T G PYROXD1 3'UTR 0.37 TCGA-BR-8680-01 12 21788435 21788435 A G LDHB 3'UTR 0.24 TCGA-BR-8680-01 12 21807557 21807557 C T LDHB Missense_Mutation p.A17T 0.26 tolerated(0.32) benign(0.009) TCGA-BR-8680-01 12 22214262 22214262 T A CMAS Missense_Mutation p.V279D 0.30 deleterious(0) probably_damaging(0.956) TCGA-BR-8680-01 12 2224703 2224703 C T CACNA1C Silent p.V121V 0.33 TCGA-BR-8680-01 12 22354446 22354447 - A ST8SIA1 3'UTR 0.27 TCGA-BR-8680-01 12 22623827 22623827 C T C2CD5 Missense_Mutation p.A793T 0.25 tolerated(0.07) possibly_damaging(0.517) TCGA-BR-8680-01 12 22676481 22676481 C T C2CD5 Missense_Mutation p.D227N 0.38 deleterious(0) benign(0.35) TCGA-BR-8680-01 12 24048769 24048769 C T SOX5 Silent p.E76E 0.30 TCGA-BR-8680-01 12 24995140 24995140 A C BCAT1 Silent p.L243L 0.27 TCGA-BR-8680-01 12 25148944 25148944 G A C12orf77 Silent p.N68N 0.30 TCGA-BR-8680-01 12 25264706 25264706 C A CASC1 Missense_Mutation p.K593N 0.32 deleterious(0) probably_damaging(0.997) TCGA-BR-8680-01 12 25297436 25297436 C A CASC1 Missense_Mutation p.D289Y 0.33 deleterious(0.01) possibly_damaging(0.627) TCGA-BR-8680-01 12 25378562 25378562 C T KRAS Missense_Mutation p.A146T 0.27 deleterious(0.03) possibly_damaging(0.876) TCGA-BR-8680-01 12 2602492 2602492 C T CACNA1C Silent p.F351F 0.38 TCGA-BR-8680-01 12 26276620 26276620 T G BHLHE41 Missense_Mutation p.K97Q 0.35 deleterious(0.05) probably_damaging(0.975) TCGA-BR-8680-01 12 26596550 26596550 G A ITPR2 Missense_Mutation p.L2126F 0.33 deleterious(0) possibly_damaging(0.89) TCGA-BR-8680-01 12 26752221 26752221 C T ITPR2 Missense_Mutation p.E1287K 0.30 deleterious(0) probably_damaging(0.995) TCGA-BR-8680-01 12 26775334 26775334 C A ITPR2 Nonsense_Mutation p.E1043* 0.25 TCGA-BR-8680-01 12 26811002 26811002 C A ITPR2 Nonsense_Mutation p.E650* 0.29 TCGA-BR-8680-01 12 27064188 27064188 G A ASUN Missense_Mutation p.S623L 0.32 deleterious(0.01) probably_damaging(0.961) TCGA-BR-8680-01 12 27117753 27117753 T G FGFR1OP2 3'UTR 0.33 TCGA-BR-8680-01 12 27521247 27521247 C T ARNTL2 Silent p.R28R 0.35 TCGA-BR-8680-01 12 27533205 27533205 C T ARNTL2 Missense_Mutation p.R118W 0.30 deleterious(0) probably_damaging(0.997) TCGA-BR-8680-01 12 27813821 27813821 C T PPFIBP1 Silent p.I303I 0.33 TCGA-BR-8680-01 12 28116612 28116612 C T PTHLH Missense_Mutation p.A65T 0.29 tolerated(0.09) possibly_damaging(0.616) TCGA-BR-8680-01 12 29446462 29446462 T G FAR2 Intron 0.38 TCGA-BR-8680-01 12 29486854 29486854 C T FAR2 3'UTR 0.33 TCGA-BR-8680-01 12 30837302 30837302 C T IPO8 Missense_Mutation p.E86K 0.34 deleterious(0) probably_damaging(0.978) TCGA-BR-8680-01 12 30869579 30869579 C T CAPRIN2 Missense_Mutation p.R727Q 0.31 tolerated(0.12) benign(0.428) TCGA-BR-8680-01 12 31247735 31247735 C T DDX11 Silent p.I487I 0.29 TCGA-BR-8680-01 12 3149557 3149557 G A TEAD4 Silent p.E406E 0.34 TCGA-BR-8680-01 12 31850304 31850304 C A AMN1 Missense_Mutation p.K194N 0.31 tolerated(0.13) possibly_damaging(0.907) TCGA-BR-8680-01 12 32735043 32735043 A C FGD4 Missense_Mutation p.K81T 0.45 tolerated_low_confidence(0.73) benign(0.002) TCGA-BR-8680-01 12 331772 331772 C T SLC6A13 Missense_Mutation p.E481K 0.38 tolerated(0.23) possibly_damaging(0.904) TCGA-BR-8680-01 12 33559799 33559799 A C SYT10 Missense_Mutation p.I334M 0.33 deleterious(0) probably_damaging(0.917) TCGA-BR-8680-01 12 335650 335650 G A SLC6A13 Silent p.S322S 0.33 TCGA-BR-8680-01 12 39703566 39703566 G A KIF21A Missense_Mutation p.R1367C 0.37 deleterious(0.03) probably_damaging(0.957) TCGA-BR-8680-01 12 39998622 39998622 G A ABCD2 Silent p.S449S 0.27 TCGA-BR-8680-01 12 40076662 40076662 G A C12orf40 Silent p.E312E 0.28 TCGA-BR-8680-01 12 40344939 40344939 T G SLC2A13 Intron 0.55 TCGA-BR-8680-01 12 40645114 40645114 T C LRRK2 Silent p.L347L 0.38 TCGA-BR-8680-01 12 40681202 40681202 T C LRRK2 Silent p.S850S 0.49 TCGA-BR-8680-01 12 40715849 40715849 G A LRRK2 Missense_Mutation p.R1728H 0.35 deleterious(0) probably_damaging(0.964) TCGA-BR-8680-01 12 41316077 41316077 G A CNTN1 Missense_Mutation p.D83N 0.31 deleterious(0.04) possibly_damaging(0.816) TCGA-BR-8680-01 12 41327516 41327516 G A CNTN1 Missense_Mutation p.R274Q 0.29 tolerated(0.11) benign(0.425) TCGA-BR-8680-01 12 41418977 41418977 A G CNTN1 Missense_Mutation p.K850R 0.04 tolerated(0.28) benign(0.003) TCGA-BR-8680-01 12 41582289 41582289 C T PDZRN4 Missense_Mutation p.A11V 0.52 tolerated_low_confidence(0.05) possibly_damaging(0.494) TCGA-BR-8680-01 12 41967456 41967456 C T PDZRN4 Missense_Mutation p.R959C 0.28 deleterious(0) probably_damaging(0.998) TCGA-BR-8680-01 12 42512847 42512847 G A GXYLT1 Silent p.F147F 0.23 TCGA-BR-8680-01 12 42836453 42836453 A G PPHLN1 Silent p.G345G 0.29 TCGA-BR-8680-01 12 42854435 42854435 G A PRICKLE1 Missense_Mutation p.P558S 0.07 tolerated(0.32) benign(0.009) TCGA-BR-8680-01 12 430229 430229 C A KDM5A Nonsense_Mutation p.E825* 0.30 TCGA-BR-8680-01 12 432777 432777 C A KDM5A Missense_Mutation p.K713N 0.27 tolerated(0.55) benign(0.01) TCGA-BR-8680-01 12 43771280 43771280 C T ADAMTS20 Missense_Mutation p.R1628Q 0.24 tolerated(0.79) benign(0.006) TCGA-BR-8680-01 12 43777440 43777440 G T ADAMTS20 Missense_Mutation p.S1573Y 0.35 tolerated(0.49) benign(0.254) TCGA-BR-8680-01 12 43840416 43840416 A C ADAMTS20 Missense_Mutation p.F727V 0.32 deleterious(0) probably_damaging(0.96) TCGA-BR-8680-01 12 43847773 43847773 C T ADAMTS20 Missense_Mutation p.S566N 0.17 deleterious(0.03) benign(0.386) TCGA-BR-8680-01 12 44913847 44913847 G A NELL2 Missense_Mutation p.R831C 0.31 deleterious(0) probably_damaging(0.996) TCGA-BR-8680-01 12 44915858 44915858 G A NELL2 Silent p.C750C 0.30 TCGA-BR-8680-01 12 44917221 44917221 G T NELL2 Silent p.T667T 0.32 TCGA-BR-8680-01 12 45173782 45173782 C T NELL2 Missense_Mutation p.G170D 0.29 deleterious(0.01) benign(0.186) TCGA-BR-8680-01 12 45740823 45740823 G A ANO6 Missense_Mutation p.E121K 0.33 deleterious(0) benign(0.426) TCGA-BR-8680-01 12 46320292 46320292 A G SCAF11 Silent p.G1064G 0.32 TCGA-BR-8680-01 12 46320408 46320408 C A SCAF11 Nonsense_Mutation p.E1026* 0.28 TCGA-BR-8680-01 12 46326965 46326965 C A SCAF11 Missense_Mutation p.R228I 0.28 deleterious(0) probably_damaging(0.998) TCGA-BR-8680-01 12 4716511 4716511 G A DYRK4 Missense_Mutation p.A325T 0.33 tolerated(0.4) benign(0.008) TCGA-BR-8680-01 12 47178396 47178396 A G SLC38A4 Missense_Mutation p.L141S 0.37 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 12 4737890 4737890 G A AKAP3 Missense_Mutation p.R60W 0.38 deleterious(0.01) possibly_damaging(0.724) TCGA-BR-8680-01 12 47629778 47629778 C T PCED1B Missense_Mutation p.P311L 0.33 tolerated(0.77) benign(0.242) TCGA-BR-8680-01 12 48096524 48096524 C A RPAP3 Missense_Mutation p.D34Y 0.34 deleterious(0) probably_damaging(0.99) TCGA-BR-8680-01 12 48380929 48380929 A C COL2A1 Missense_Mutation p.F433V 0.41 unknown(0) TCGA-BR-8680-01 12 4855352 4855352 C A GALNT8 Missense_Mutation p.F367L 0.21 deleterious(0) probably_damaging(0.987) TCGA-BR-8680-01 12 48919915 48919915 C A OR8S1 Silent p.V167V 0.21 TCGA-BR-8680-01 12 49087086 49087086 C T CCNT1 Silent p.S637S 0.33 TCGA-BR-8680-01 12 49099624 49099624 T G CCNT1 Missense_Mutation p.K100T 0.38 deleterious(0) probably_damaging(0.996) TCGA-BR-8680-01 12 49298044 49298044 A G CCDC65 5'UTR 0.36 TCGA-BR-8680-01 12 49298822 49298822 G T CCDC65 Nonsense_Mutation p.E76* 0.32 TCGA-BR-8680-01 12 49494202 49494202 G A LMBR1L Silent p.S403S 0.09 TCGA-BR-8680-01 12 49522457 49522457 G A TUBA1B Missense_Mutation p.R214C 0.18 tolerated_low_confidence(0.1) possibly_damaging(0.606) TCGA-BR-8680-01 12 49959911 49959911 C T MCRS1 Missense_Mutation p.R46Q 0.38 tolerated_low_confidence(0.09) possibly_damaging(0.806) TCGA-BR-8680-01 12 50028234 50028234 A G PRPF40B Missense_Mutation p.D311G 0.39 deleterious(0) probably_damaging(0.942) TCGA-BR-8680-01 12 50036936 50036936 G A FMNL3 3'UTR 0.28 TCGA-BR-8680-01 12 50196943 50196943 C A NCKAP5L Missense_Mutation p.E43D 0.28 deleterious(0.01) probably_damaging(0.994) TCGA-BR-8680-01 12 5021705 5021705 C T KCNA1 Silent p.I387I 0.31 TCGA-BR-8680-01 12 50860866 50860866 G T LARP4 Missense_Mutation p.R503M 0.38 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 12 51069154 51069154 T G DIP2B Missense_Mutation p.L280R 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8680-01 12 51133264 51133264 C A DIP2B Missense_Mutation p.H1417N 0.20 tolerated(0.08) benign(0.37) TCGA-BR-8680-01 12 5154543 5154543 C A KCNA5 Silent p.I410I 0.24 TCGA-BR-8680-01 12 51636389 51636389 T C DAZAP2 Missense_Mutation p.F193L 0.38 tolerated_low_confidence(0.31) possibly_damaging(0.682) TCGA-BR-8680-01 12 52284396 52284396 T C ANKRD33 Silent p.V222V 0.47 TCGA-BR-8680-01 12 52636852 52636852 G A KRT7 Silent p.R305R 0.30 TCGA-BR-8680-01 12 52799669 52799669 G A KRT82 Silent p.F131F 0.35 TCGA-BR-8680-01 12 52843820 52843820 C A KRT6B Missense_Mutation p.E264D 0.07 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 12 52862857 52862857 A G KRT6C Missense_Mutation p.Y562H 0.35 deleterious(0) unknown(0) TCGA-BR-8680-01 12 52865480 52865480 C A KRT6C Missense_Mutation p.E264D 0.21 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 12 52994829 52994829 G A KRT72 Silent p.F136F 0.35 TCGA-BR-8680-01 12 53170559 53170559 C T KRT76 Missense_Mutation p.D173N 0.32 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 12 53202570 53202570 C T KRT4 Missense_Mutation p.R300H 0.36 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 12 53564258 53564258 G A CSAD Missense_Mutation p.A226V 0.29 deleterious(0.01) probably_damaging(0.975) TCGA-BR-8680-01 12 53680078 53680078 C T ESPL1 Silent p.V1186V 0.29 TCGA-BR-8680-01 12 53880773 53880773 T C MAP3K12 Missense_Mutation p.I135V 0.31 deleterious(0.02) benign(0.34) TCGA-BR-8680-01 12 54350167 54350167 G A HOXC12 Silent p.S222S 0.36 TCGA-BR-8680-01 12 54423519 54423519 C A HOXC6 Missense_Mutation p.H161N 0.27 deleterious(0) probably_damaging(0.994) TCGA-BR-8680-01 12 54428171 54428171 C T HOXC5 Silent p.I188I 0.38 TCGA-BR-8680-01 12 54575840 54575840 C T SMUG1 3'UTR 0.29 TCGA-BR-8680-01 12 55038453 55038453 A C DCD 3'UTR 0.38 TCGA-BR-8680-01 12 55725556 55725556 T G OR6C3 Missense_Mutation p.I24M 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.714) TCGA-BR-8680-01 12 55863404 55863404 A G OR6C70 Silent p.D173D 0.31 TCGA-BR-8680-01 12 55886733 55886733 C A OR6C68 Nonsense_Mutation p.S191* 0.34 TCGA-BR-8680-01 12 56078016 56078016 G A METTL7B 3'UTR 0.38 TCGA-BR-8680-01 12 56151253 56151253 A G SARNP 3'UTR 0.12 TCGA-BR-8680-01 12 56215887 56215887 C T DNAJC14 Silent p.G661G 0.34 TCGA-BR-8680-01 12 56231717 56231717 A G MMP19 Missense_Mutation p.F324L 0.31 tolerated(0.53) benign(0.001) TCGA-BR-8680-01 12 56349139 56349139 T G PMEL Missense_Mutation p.E597A 0.36 tolerated(0.08) possibly_damaging(0.46) TCGA-BR-8680-01 12 56349922 56349922 C T PMEL Missense_Mutation p.R479Q 0.27 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 12 56526515 56526515 G A ESYT1 Missense_Mutation p.E392K 0.30 deleterious(0) probably_damaging(0.987) TCGA-BR-8680-01 12 56559121 56559121 A G SMARCC2 Silent p.V1040V 0.38 TCGA-BR-8680-01 12 56648032 56648032 G A ANKRD52 Missense_Mutation p.A242V 0.29 deleterious(0.04) probably_damaging(0.973) TCGA-BR-8680-01 12 56740662 56740662 C T STAT2 Missense_Mutation p.R601H 0.32 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 12 56755504 56755504 G A APOF Silent p.V162V 0.14 TCGA-BR-8680-01 12 56872893 56872895 CTC - GLS2 In_Frame_Del p.E159del 0.24 TCGA-BR-8680-01 12 57000092 57000092 C A BAZ2A Missense_Mutation p.R735I 0.45 deleterious(0) benign(0.177) TCGA-BR-8680-01 12 57167906 57167906 C T HSD17B6 Silent p.I90I 0.26 TCGA-BR-8680-01 12 57180939 57180939 A C HSD17B6 Missense_Mutation p.N256T 0.36 tolerated(0.55) benign(0) TCGA-BR-8680-01 12 57441820 57441820 G T MYO1A Missense_Mutation p.F61L 0.32 tolerated(0.69) benign(0.005) TCGA-BR-8680-01 12 57993209 57993209 C T PIP4K2C Silent p.S229S 0.34 TCGA-BR-8680-01 12 58005727 58005727 G A ARHGEF25 Intron 0.18 TCGA-BR-8680-01 12 58010244 58010244 A G ARHGEF25 Missense_Mutation p.E572G 0.25 tolerated_low_confidence(0.13) possibly_damaging(0.464) TCGA-BR-8680-01 12 58015518 58015518 G A SLC26A10 Missense_Mutation p.E201K 0.30 deleterious(0.03) probably_damaging(0.998) TCGA-BR-8680-01 12 58024083 58024083 G A B4GALNT1 Silent p.D188D 0.20 TCGA-BR-8680-01 12 58159172 58159172 A G CYP27B1 Missense_Mutation p.V166A 0.42 deleterious(0.03) benign(0.023) TCGA-BR-8680-01 12 60169004 60169004 C T SLC16A7 Nonsense_Mutation p.R310* 0.34 TCGA-BR-8680-01 12 6058967 6058967 A G VWF Silent p.D2746D 0.30 TCGA-BR-8680-01 12 6132884 6132884 C T VWF Missense_Mutation p.A1098T 0.25 tolerated(0.08) benign(0.002) TCGA-BR-8680-01 12 6181527 6181527 C T VWF Missense_Mutation p.G360D 0.38 deleterious(0) probably_damaging(0.986) TCGA-BR-8680-01 12 6232023 6232023 C A VWF Intron 0.31 TCGA-BR-8680-01 12 62902072 62902072 G T MON2 Nonsense_Mutation p.E266* 0.36 TCGA-BR-8680-01 12 63042363 63042363 T C PPM1H Missense_Mutation p.D484G 0.36 tolerated(0.21) possibly_damaging(0.686) TCGA-BR-8680-01 12 6334636 6334636 C T CD9 Silent p.F37F 0.29 TCGA-BR-8680-01 12 64002439 64002439 C A DPY19L2 Missense_Mutation p.R412I 0.27 deleterious(0.05) benign(0.102) TCGA-BR-8680-01 12 64587537 64587537 T C C12orf66 3'UTR 0.55 TCGA-BR-8680-01 12 65720710 65720710 G A MSRB3 Missense_Mutation p.E68K 0.39 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 12 65857005 65857005 C T MSRB3 Missense_Mutation p.S161L 0.35 deleterious(0) probably_damaging(0.993) TCGA-BR-8680-01 12 665919 665919 A G B4GALNT3 Missense_Mutation p.D756G 0.29 tolerated(1) benign(0.002) TCGA-BR-8680-01 12 66712497 66712497 G T HELB Missense_Mutation p.D694Y 0.30 deleterious(0) probably_damaging(0.971) TCGA-BR-8680-01 12 66742845 66742845 C A GRIP1 Missense_Mutation p.S1062I 0.31 tolerated_low_confidence(0.18) benign(0.002) TCGA-BR-8680-01 12 6692411 6692411 C A CHD4 Missense_Mutation p.R1338I 0.35 deleterious(0) probably_damaging(0.928) TCGA-BR-8680-01 12 6749577 6749577 C T ACRBP Missense_Mutation p.D397N 0.29 deleterious(0.02) possibly_damaging(0.794) TCGA-BR-8680-01 12 68050891 68050891 C T DYRK2 Silent p.G68G 0.38 TCGA-BR-8680-01 12 68619407 68619407 C T IL26 Missense_Mutation p.A44T 0.29 tolerated(0.97) benign(0.001) TCGA-BR-8680-01 12 68696398 68696398 A G MDM1 Splice_Site p.X658_splice 0.40 TCGA-BR-8680-01 12 69128606 69128606 A C NUP107 Missense_Mutation p.K794T 0.31 deleterious(0.05) possibly_damaging(0.882) TCGA-BR-8680-01 12 6925323 6925323 G A CD4 Missense_Mutation p.E237K 0.37 deleterious(0.01) probably_damaging(0.992) TCGA-BR-8680-01 12 7043132 7043132 G A ATN1 5'UTR 0.42 TCGA-BR-8680-01 12 7053657 7053657 T C C12orf57 Missense_Mutation p.I24T 0.22 tolerated(0.05) benign(0.004) TCGA-BR-8680-01 12 70723256 70723256 C T CNOT2 Missense_Mutation p.R98C 0.26 deleterious_low_confidence(0) possibly_damaging(0.53) TCGA-BR-8680-01 12 70925842 70925842 A G PTPRB Silent p.L2159L 0.42 TCGA-BR-8680-01 12 70986133 70986133 C T PTPRB Missense_Mutation p.R570Q 0.27 tolerated(0.1) possibly_damaging(0.739) TCGA-BR-8680-01 12 71002899 71002899 T G PTPRB Missense_Mutation p.N310T 0.36 tolerated(0.08) benign(0.005) TCGA-BR-8680-01 12 71056292 71056292 G A PTPRR Nonsense_Mutation p.R531* 0.35 TCGA-BR-8680-01 12 71286586 71286586 C T PTPRR Missense_Mutation p.R77H 0.34 tolerated_low_confidence(0.31) benign(0) TCGA-BR-8680-01 12 72029233 72029233 C T ZFC3H1 Missense_Mutation p.R743Q 0.34 tolerated(0.1) probably_damaging(0.986) TCGA-BR-8680-01 12 72266715 72266715 G A TBC1D15 Missense_Mutation p.E46K 0.27 tolerated(0.36) possibly_damaging(0.515) TCGA-BR-8680-01 12 72266725 72266725 T C TBC1D15 Missense_Mutation p.V49A 0.28 deleterious(0) possibly_damaging(0.903) TCGA-BR-8680-01 12 72372774 72372774 G A TPH2 Missense_Mutation p.S283N 0.34 deleterious(0) probably_damaging(0.91) TCGA-BR-8680-01 12 7295598 7295598 C T CLSTN3 Silent p.F558F 0.36 TCGA-BR-8680-01 12 7475867 7475867 A C ACSM4 Missense_Mutation p.K388T 0.43 deleterious(0) probably_damaging(0.995) TCGA-BR-8680-01 12 7556295 7556295 C G CD163L1 Missense_Mutation p.S415T 0.31 tolerated(0.1) benign(0.004) TCGA-BR-8680-01 12 75737646 75737646 T G GLIPR1L1 Silent p.A116A 0.39 TCGA-BR-8680-01 12 75897739 75897739 T C KRR1 Missense_Mutation p.K259R 0.28 tolerated(0.09) possibly_damaging(0.852) TCGA-BR-8680-01 12 75902105 75902105 T G KRR1 Missense_Mutation p.E69D 0.32 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 12 76424776 76424776 T C PHLDA1 Missense_Mutation p.Y249C 0.35 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-BR-8680-01 12 76778098 76778098 A C OSBPL8 Nonsense_Mutation p.Y522* 0.27 TCGA-BR-8680-01 12 77235880 77235880 G T ZDHHC17 Missense_Mutation p.K420N 0.35 deleterious(0) possibly_damaging(0.654) TCGA-BR-8680-01 12 77244667 77244667 C T ZDHHC17 Nonsense_Mutation p.R601* 0.33 TCGA-BR-8680-01 12 772726 772726 A G NINJ2 5'UTR 0.38 TCGA-BR-8680-01 12 77439830 77439830 C T E2F7 Missense_Mutation p.D273N 0.35 deleterious(0) probably_damaging(0.995) TCGA-BR-8680-01 12 78388626 78388626 G A NAV3 Missense_Mutation p.A239T 0.29 tolerated(0.49) possibly_damaging(0.492) TCGA-BR-8680-01 12 78513721 78513721 C T NAV3 Nonsense_Mutation p.R1249* 0.36 TCGA-BR-8680-01 12 78598740 78598740 A G NAV3 Missense_Mutation p.E2265G 0.35 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 12 7972091 7972091 G T SLC2A14 Missense_Mutation p.S376Y 0.32 deleterious(0) possibly_damaging(0.555) TCGA-BR-8680-01 12 80747147 80747147 G A OTOGL Missense_Mutation p.R1808Q 0.29 tolerated(0.59) benign(0.001) TCGA-BR-8680-01 12 8075568 8075568 A G SLC2A3 Missense_Mutation p.V374A 0.34 deleterious(0) possibly_damaging(0.764) TCGA-BR-8680-01 12 81239585 81239585 C T LIN7A Missense_Mutation p.R136H 0.35 tolerated(0.07) probably_damaging(0.954) TCGA-BR-8680-01 12 8200530 8200530 T C FOXJ2 Silent p.Y290Y 0.40 TCGA-BR-8680-01 12 8211843 8211843 A G C3AR1 Silent p.G313G 0.28 TCGA-BR-8680-01 12 8248234 8248234 G A NECAP1 Silent p.T238T 0.33 TCGA-BR-8680-01 12 82792980 82792980 C A METTL25 Missense_Mutation p.S313Y 0.33 deleterious(0.01) probably_damaging(0.933) TCGA-BR-8680-01 12 8374624 8374624 G A FAM90A1 Missense_Mutation p.R397W 0.25 deleterious(0.02) probably_damaging(0.976) TCGA-BR-8680-01 12 8386974 8386974 G A RP11-266K4.9 5'Flank 0.30 TCGA-BR-8680-01 12 85264417 85264417 G A SLC6A15 Silent p.A445A 0.34 TCGA-BR-8680-01 12 85411330 85411330 T C TSPAN19 Missense_Mutation p.N167D 0.44 deleterious(0.01) possibly_damaging(0.584) TCGA-BR-8680-01 12 85450183 85450184 - A LRRIQ1 Frame_Shift_Ins p.I540Nfs*8 0.24 TCGA-BR-8680-01 12 85492191 85492191 T G LRRIQ1 Missense_Mutation p.I982M 0.34 deleterious(0.02) probably_damaging(0.999) TCGA-BR-8680-01 12 86276065 86276065 G T NTS Missense_Mutation p.R142I 0.33 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 12 8628798 8628798 G A CLEC6A Nonsense_Mutation p.W149* 0.29 TCGA-BR-8680-01 12 862916 862916 A G WNK1 Missense_Mutation p.D62G 0.28 deleterious(0) unknown(0) TCGA-BR-8680-01 12 86373668 86373668 A C MGAT4C Missense_Mutation p.F279C 0.36 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 12 86383216 86383216 G T MGAT4C Missense_Mutation p.L37I 0.31 tolerated(0.13) benign(0.065) TCGA-BR-8680-01 12 86383328 86383328 C A MGAT4C Intron 0.29 TCGA-BR-8680-01 12 8691820 8691820 A G CLEC4E Silent p.Y71Y 0.34 TCGA-BR-8680-01 12 88420349 88420349 G A C12orf50 Missense_Mutation p.P17S 0.26 deleterious(0.04) probably_damaging(0.999) TCGA-BR-8680-01 12 88482952 88482952 C A CEP290 Missense_Mutation p.D1296Y 0.36 probably_damaging(1) TCGA-BR-8680-01 12 89745792 89745792 G A DUSP6 Missense_Mutation p.P9S 0.28 tolerated_low_confidence(0.36) benign(0.007) TCGA-BR-8680-01 12 89864189 89864189 C T POC1B Silent p.K253K 0.39 TCGA-BR-8680-01 12 90004246 90004246 G A ATP2B1 Nonsense_Mutation p.R763* 0.34 TCGA-BR-8680-01 12 9008114 9008114 C T A2ML1 Missense_Mutation p.A925V 0.30 tolerated(0.28) benign(0.003) TCGA-BR-8680-01 12 91502039 91502039 C T LUM Missense_Mutation p.E240K 0.39 tolerated(1) benign(0.007) TCGA-BR-8680-01 12 9243800 9243800 G A A2M Silent p.I822I 0.31 TCGA-BR-8680-01 12 9261990 9261990 A G A2M Missense_Mutation p.F229L 0.25 deleterious(0) possibly_damaging(0.762) TCGA-BR-8680-01 12 9303273 9303273 C A PZP Missense_Mutation p.A1451S 0.34 deleterious(0) probably_damaging(0.997) TCGA-BR-8680-01 12 93162759 93162759 T G PLEKHG7 Missense_Mutation p.V312G 0.30 tolerated(0.39) benign(0.002) TCGA-BR-8680-01 12 93170682 93170682 C T EEA1 Missense_Mutation p.E1351K 0.31 deleterious(0) possibly_damaging(0.848) TCGA-BR-8680-01 12 93181715 93181715 T G EEA1 Missense_Mutation p.E1026D 0.30 tolerated(0.16) benign(0.012) TCGA-BR-8680-01 12 9318693 9318693 C T PZP Missense_Mutation p.R738Q 0.28 deleterious(0.01) possibly_damaging(0.788) TCGA-BR-8680-01 12 94641876 94641876 A C PLXNC1 Missense_Mutation p.K862N 0.27 tolerated(0.1) benign(0.051) TCGA-BR-8680-01 12 94649056 94649056 G T PLXNC1 Missense_Mutation p.R1024I 0.28 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 12 94673390 94673390 C T PLXNC1 Missense_Mutation p.S1247F 0.27 tolerated(1) benign(0.163) TCGA-BR-8680-01 12 95478317 95478317 A G FGD6 Silent p.L1405L 0.34 TCGA-BR-8680-01 12 95479665 95479665 T C FGD6 Missense_Mutation p.D1333G 0.33 tolerated(0.46) benign(0.052) TCGA-BR-8680-01 12 95603582 95603582 C T FGD6 Missense_Mutation p.R493Q 0.33 deleterious(0) possibly_damaging(0.477) TCGA-BR-8680-01 12 95603952 95603952 A G FGD6 Missense_Mutation p.C370R 0.06 tolerated_low_confidence(0.12) possibly_damaging(0.541) TCGA-BR-8680-01 12 95604098 95604098 C T FGD6 Missense_Mutation p.R321Q 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.854) TCGA-BR-8680-01 12 95906667 95906667 T G METAP2 Missense_Mutation p.F387V 0.31 tolerated(0.17) probably_damaging(0.948) TCGA-BR-8680-01 12 96312688 96312688 A C CCDC38 Missense_Mutation p.L35R 0.41 deleterious(0) probably_damaging(0.969) TCGA-BR-8680-01 12 96312689 96312689 G T CCDC38 Missense_Mutation p.L35I 0.28 tolerated(0.06) possibly_damaging(0.586) TCGA-BR-8680-01 12 96692758 96692758 T C CDK17 Missense_Mutation p.T202A 0.28 deleterious(0.01) benign(0.025) TCGA-BR-8680-01 12 97051678 97051678 G T C12orf55 Nonsense_Mutation p.E1707* 0.21 TCGA-BR-8680-01 12 97093822 97093822 A G C12orf55 Missense_Mutation p.N2142S 0.31 tolerated(0.16) benign(0.001) TCGA-BR-8680-01 12 97136242 97136242 A C C12orf55 Missense_Mutation p.E2366A 0.31 tolerated(0.16) benign(0.019) TCGA-BR-8680-01 12 97345812 97345812 G T NEDD1 Missense_Mutation p.R662I 0.30 deleterious(0) probably_damaging(0.98) TCGA-BR-8680-01 12 98927398 98927398 G A TMPO Missense_Mutation p.E455K 0.23 deleterious_low_confidence(0.04) benign(0.078) TCGA-BR-8680-01 12 98992403 98992403 G A SLC25A3 Missense_Mutation p.R189Q 0.43 deleterious(0.01) possibly_damaging(0.84) TCGA-BR-8680-01 12 99080609 99080609 T G APAF1 Missense_Mutation p.D754E 0.08 deleterious(0) possibly_damaging(0.805) TCGA-BR-8680-01 12 99093197 99093197 G A APAF1 Silent p.A772A 0.26 TCGA-BR-8680-01 13 100191723 100191723 A C TM9SF2 Missense_Mutation p.K247T 0.26 tolerated(0.45) benign(0.102) TCGA-BR-8680-01 13 100201466 100201466 C A TM9SF2 Missense_Mutation p.L440I 0.35 deleterious(0.04) probably_damaging(0.999) TCGA-BR-8680-01 13 101712261 101712261 A C NALCN Missense_Mutation p.L1605R 0.44 tolerated(0.33) possibly_damaging(0.495) TCGA-BR-8680-01 13 101735209 101735209 A G NALCN Missense_Mutation p.V1239A 0.32 tolerated(0.7) benign(0.001) TCGA-BR-8680-01 13 101742314 101742314 C T NALCN Silent p.A1091A 0.30 TCGA-BR-8680-01 13 101755555 101755555 C A NALCN Nonsense_Mutation p.E1009* 0.30 TCGA-BR-8680-01 13 101797193 101797193 G A NALCN Nonsense_Mutation p.R632* 0.30 TCGA-BR-8680-01 13 102105271 102105271 G A ITGBL1 Silent p.S29S 0.07 TCGA-BR-8680-01 13 102359183 102359183 T G ITGBL1 Missense_Mutation p.C404G 0.38 tolerated(0.08) possibly_damaging(0.812) TCGA-BR-8680-01 13 102368147 102368147 C A ITGBL1 3'UTR 0.40 TCGA-BR-8680-01 13 103054048 103054048 C T FGF14 5'UTR 0.24 TCGA-BR-8680-01 13 103295587 103295587 C T TPP2 Missense_Mutation p.S679L 0.33 deleterious(0) probably_damaging(0.988) TCGA-BR-8680-01 13 103459815 103459815 T G BIVM-ERCC5 Missense_Mutation p.I38M 0.35 deleterious_low_confidence(0.03) possibly_damaging(0.844) TCGA-BR-8680-01 13 103506186 103506186 A G BIVM-ERCC5 Missense_Mutation p.K541R 0.35 deleterious(0.02) probably_damaging(0.953) TCGA-BR-8680-01 13 103508441 103508441 G A BIVM-ERCC5 Missense_Mutation p.M595I 0.33 deleterious(0.03) possibly_damaging(0.584) TCGA-BR-8680-01 13 103513933 103513933 T C BIVM-ERCC5 Missense_Mutation p.V676A 0.26 tolerated(0.13) probably_damaging(0.932) TCGA-BR-8680-01 13 103524621 103524621 T A BIVM-ERCC5 Missense_Mutation p.L1344I 0.32 deleterious(0.02) probably_damaging(0.953) TCGA-BR-8680-01 13 106124904 106124904 G T DAOA Nonsense_Mutation p.G51* 0.26 TCGA-BR-8680-01 13 107196385 107196385 A G ARGLU1 Missense_Mutation p.S261P 0.23 deleterious(0.01) possibly_damaging(0.504) TCGA-BR-8680-01 13 107863091 107863091 C T FAM155A Missense_Mutation p.A310T 0.33 deleterious(0.01) possibly_damaging(0.601) TCGA-BR-8680-01 13 108518338 108518338 C - FAM155A Frame_Shift_Del p.D203Tfs*5 0.27 TCGA-BR-8680-01 13 108955863 108955863 T C TNFSF13B Missense_Mutation p.V219A 0.30 deleterious(0.01) possibly_damaging(0.876) TCGA-BR-8680-01 13 109753197 109753197 C T MYO16 Nonsense_Mutation p.R1112* 0.24 TCGA-BR-8680-01 13 109859194 109859194 A C MYO16 3'UTR 0.14 TCGA-BR-8680-01 13 110831355 110831355 G A COL4A1 Silent p.G791G 0.24 TCGA-BR-8680-01 13 111335429 111335429 G A CARS2 Silent p.V208V 0.31 TCGA-BR-8680-01 13 111340140 111340140 C T CARS2 Missense_Mutation p.E167K 0.35 deleterious(0.01) probably_damaging(0.951) TCGA-BR-8680-01 13 111372025 111372025 C T ING1 Nonsense_Mutation p.R339* 0.30 TCGA-BR-8680-01 13 111532320 111532320 A G ANKRD10 Silent p.I309I 0.49 TCGA-BR-8680-01 13 111532435 111532435 G A ANKRD10 Missense_Mutation p.S271L 0.30 tolerated(0.4) benign(0.013) TCGA-BR-8680-01 13 111935539 111935539 G A ARHGEF7 Silent p.A614A 0.55 TCGA-BR-8680-01 13 111955528 111955528 C T ARHGEF7 3'UTR 0.50 TCGA-BR-8680-01 13 113170831 113170831 G A TUBGCP3 Missense_Mutation p.A670V 0.28 deleterious(0) benign(0.364) TCGA-BR-8680-01 13 113512583 113512583 C T ATP11A Silent p.L882L 0.32 TCGA-BR-8680-01 13 113527971 113527971 C A ATP11A Missense_Mutation p.L1048I 0.34 tolerated(0.29) benign(0.083) TCGA-BR-8680-01 13 113772894 113772894 G A F7 Missense_Mutation p.E325K 0.41 tolerated(0.05) probably_damaging(0.982) TCGA-BR-8680-01 13 113862438 113862438 G A PCID2 Intron 0.40 TCGA-BR-8680-01 13 114469097 114469097 C T TMEM255B Missense_Mutation p.S19L 0.36 tolerated(0.26) benign(0.019) TCGA-BR-8680-01 13 115030682 115030682 G A CDC16 Missense_Mutation p.E524K 0.33 deleterious(0.01) benign(0.336) TCGA-BR-8680-01 13 115070354 115070354 T G UPF3A Missense_Mutation p.S465A 0.38 tolerated(0.39) benign(0.001) TCGA-BR-8680-01 13 20000636 20000636 C T TPTE2 Missense_Mutation p.D442N 0.23 tolerated(0.33) possibly_damaging(0.57) TCGA-BR-8680-01 13 20240591 20240591 C T MPHOSPH8 Silent p.I682I 0.38 TCGA-BR-8680-01 13 20277309 20277309 G A PSPC1 3'UTR 0.09 TCGA-BR-8680-01 13 20277378 20277378 A G PSPC1 Silent p.G503G 0.22 TCGA-BR-8680-01 13 20304443 20304443 C T PSPC1 Missense_Mutation p.R365Q 0.07 tolerated(0.09) benign(0.153) TCGA-BR-8680-01 13 20356882 20356882 T G PSPC1 Missense_Mutation p.N6H 0.26 deleterious_low_confidence(0) possibly_damaging(0.703) TCGA-BR-8680-01 13 20567921 20567921 T G ZMYM2 Missense_Mutation p.F237V 0.35 deleterious(0.01) probably_damaging(0.968) TCGA-BR-8680-01 13 20633001 20633001 G T ZMYM2 Intron 0.43 TCGA-BR-8680-01 13 20716951 20716951 G A GJA3 Silent p.F159F 0.28 TCGA-BR-8680-01 13 20797280 20797280 C A GJB6 Missense_Mutation p.D114Y 0.37 deleterious(0.05) benign(0.066) TCGA-BR-8680-01 13 20797414 20797414 A G GJB6 Missense_Mutation p.F69S 0.33 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 13 21557416 21557416 A G LATS2 Missense_Mutation p.F810S 0.31 deleterious(0) possibly_damaging(0.872) TCGA-BR-8680-01 13 23906234 23906234 C T SACS Silent p.A3927A 0.34 TCGA-BR-8680-01 13 23906297 23906297 C T SACS Silent p.A3906A 0.37 TCGA-BR-8680-01 13 23906840 23906840 A G SACS Silent p.G3725G 0.33 TCGA-BR-8680-01 13 23907108 23907108 C T SACS Missense_Mutation p.R3636Q 0.31 probably_damaging(0.984) TCGA-BR-8680-01 13 23907994 23907994 C A SACS Missense_Mutation p.D3341Y 0.33 probably_damaging(0.998) TCGA-BR-8680-01 13 23908017 23908017 G T SACS Missense_Mutation p.A3333D 0.30 probably_damaging(0.997) TCGA-BR-8680-01 13 23909908 23909908 G A SACS Missense_Mutation p.R2703C 0.31 probably_damaging(0.998) TCGA-BR-8680-01 13 23911396 23911396 C T SACS Missense_Mutation p.A2207T 0.37 benign(0.146) TCGA-BR-8680-01 13 23911438 23911438 C T SACS Missense_Mutation p.D2193N 0.29 probably_damaging(0.995) TCGA-BR-8680-01 13 23913082 23913082 G A SACS Nonsense_Mutation p.R1645* 0.37 TCGA-BR-8680-01 13 23915457 23915457 T G SACS Missense_Mutation p.K853T 0.28 possibly_damaging(0.598) TCGA-BR-8680-01 13 23915664 23915664 T G SACS Missense_Mutation p.K784T 0.44 probably_damaging(0.937) TCGA-BR-8680-01 13 23929574 23929574 A G SACS Silent p.L393L 0.31 TCGA-BR-8680-01 13 24415537 24415537 C A MIPEP Silent p.G399G 0.34 TCGA-BR-8680-01 13 24465742 24465742 C T C1QTNF9B Missense_Mutation p.E230K 0.33 tolerated(0.09) benign(0.03) TCGA-BR-8680-01 13 24515769 24515769 A G ANKRD20A19P RNA 0.32 TCGA-BR-8680-01 13 25008639 25008639 T C PARP4 Missense_Mutation p.D1547G 0.26 tolerated(0.26) benign(0.057) TCGA-BR-8680-01 13 25008671 25008671 G A PARP4 Silent p.C1536C 0.27 TCGA-BR-8680-01 13 25067745 25067745 T G PARP4 Missense_Mutation p.S290R 0.36 deleterious(0) probably_damaging(0.971) TCGA-BR-8680-01 13 25171719 25171719 A G RP11-556N21.1 RNA 0.42 TCGA-BR-8680-01 13 25284622 25284622 G A ATP12A Missense_Mutation p.E936K 0.27 deleterious(0.02) probably_damaging(0.969) TCGA-BR-8680-01 13 25353856 25353856 A C RNF17 Missense_Mutation p.S161R 0.31 deleterious(0) benign(0.001) TCGA-BR-8680-01 13 25353861 25353861 C T RNF17 Silent p.F162F 0.37 TCGA-BR-8680-01 13 25406069 25406069 A C RNF17 Missense_Mutation p.K812T 0.39 deleterious(0.01) probably_damaging(0.932) TCGA-BR-8680-01 13 25444782 25444782 T C RNF17 Missense_Mutation p.V1451A 0.33 tolerated(0.18) benign(0.106) TCGA-BR-8680-01 13 25826043 25826043 C T MTMR6 Missense_Mutation p.E476K 0.35 tolerated(0.36) benign(0.001) TCGA-BR-8680-01 13 25910262 25910262 G T NUPL1 Intron 0.23 TCGA-BR-8680-01 13 26343251 26343251 G A ATP8A2 Missense_Mutation p.A818T 0.27 deleterious(0) probably_damaging(0.99) TCGA-BR-8680-01 13 26789090 26789090 C T RNF6 Missense_Mutation p.R310Q 0.30 tolerated(0.15) benign(0.128) TCGA-BR-8680-01 13 27830372 27830372 C T RPL21 Silent p.H98H 0.31 TCGA-BR-8680-01 13 28155573 28155573 T A LNX2 Nonsense_Mutation p.R90* 0.45 TCGA-BR-8680-01 13 29001999 29001999 G A FLT1 Missense_Mutation p.S389L 0.41 deleterious(0) possibly_damaging(0.713) TCGA-BR-8680-01 13 29041260 29041260 T G FLT1 Missense_Mutation p.E56D 0.30 tolerated(0.19) benign(0.026) TCGA-BR-8680-01 13 29608080 29608080 T C MTUS2 Missense_Mutation p.V765A 0.34 deleterious(0.02) probably_damaging(0.996) TCGA-BR-8680-01 13 30077268 30077268 G A MTUS2 Silent p.S1355S 0.33 TCGA-BR-8680-01 13 30346289 30346289 A C UBL3 Missense_Mutation p.I61M 0.27 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 13 30857759 30857759 C T KATNAL1 Nonsense_Mutation p.W52* 0.31 TCGA-BR-8680-01 13 31495898 31495898 G A MEDAG Silent p.T234T 0.34 TCGA-BR-8680-01 13 32376608 32376608 A G RXFP2 3'UTR 0.29 TCGA-BR-8680-01 13 32721440 32721440 C T FRY Nonsense_Mutation p.R401* 0.45 TCGA-BR-8680-01 13 32768298 32768298 G A FRY Missense_Mutation p.E1204K 0.36 deleterious(0) probably_damaging(0.961) TCGA-BR-8680-01 13 32776594 32776594 C T FRY Silent p.S1316S 0.30 TCGA-BR-8680-01 13 32802781 32802781 C T FRY Missense_Mutation p.L1799F 0.28 deleterious(0) possibly_damaging(0.889) TCGA-BR-8680-01 13 32805401 32805401 C T FRY Missense_Mutation p.R1831C 0.44 deleterious(0) probably_damaging(0.982) TCGA-BR-8680-01 13 32821606 32821606 G A FRY Silent p.G2325G 0.28 TCGA-BR-8680-01 13 32907018 32907018 G T BRCA2 Missense_Mutation p.R468I 0.35 tolerated(0.21) benign(0.037) TCGA-BR-8680-01 13 32914522 32914522 C A BRCA2 Silent p.V2010V 0.32 TCGA-BR-8680-01 13 32929345 32929345 A C BRCA2 Missense_Mutation p.N2452T 0.39 deleterious(0.05) benign(0.047) TCGA-BR-8680-01 13 33017991 33017991 T G N4BP2L2 Missense_Mutation p.K228T 0.40 tolerated(0.13) benign(0.032) TCGA-BR-8680-01 13 33275569 33275569 C A PDS5B Missense_Mutation p.S617Y 0.39 deleterious(0) possibly_damaging(0.574) TCGA-BR-8680-01 13 33590981 33590981 G A KL Missense_Mutation p.D135N 0.26 deleterious(0) probably_damaging(0.989) TCGA-BR-8680-01 13 33628183 33628183 T G KL Missense_Mutation p.F367V 0.34 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 13 35692599 35692599 G T NBEA Missense_Mutation p.R744I 0.39 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 13 36049800 36049800 T G MAB21L1 Missense_Mutation p.K159T 0.31 tolerated(0.07) benign(0.094) TCGA-BR-8680-01 13 36180562 36180562 G A NBEA Splice_Site p.X2433_splice 0.33 TCGA-BR-8680-01 13 36202263 36202263 G A NBEA Missense_Mutation p.D2499N 0.34 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 13 37269387 37269387 C T SERTM1 Missense_Mutation p.L58F 0.25 tolerated_low_confidence(0.07) probably_damaging(0.996) TCGA-BR-8680-01 13 37539735 37539735 A C ALG5 Missense_Mutation p.F250L 0.32 deleterious(0.02) probably_damaging(0.914) TCGA-BR-8680-01 13 38211598 38211598 C A TRPC4 Missense_Mutation p.K797N 0.36 tolerated(0.14) benign(0.005) TCGA-BR-8680-01 13 38213186 38213186 C A TRPC4 Missense_Mutation p.E739D 0.32 tolerated(1) benign(0.101) TCGA-BR-8680-01 13 38213191 38213191 C T TRPC4 Missense_Mutation p.E738K 0.32 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 13 39262086 39262086 C T FREM2 Missense_Mutation p.A202V 0.35 tolerated(0.15) benign(0.05) TCGA-BR-8680-01 13 39262102 39262102 C T FREM2 Silent p.F207F 0.29 TCGA-BR-8680-01 13 39265671 39265671 A G FREM2 Missense_Mutation p.D1397G 0.39 deleterious(0.02) possibly_damaging(0.69) TCGA-BR-8680-01 13 39621836 39621836 A G NHLRC3 Missense_Mutation p.I273V 0.32 tolerated(0.51) benign(0.002) TCGA-BR-8680-01 13 40175113 40175113 C T LHFP Missense_Mutation p.E81K 0.31 tolerated(0.15) benign(0.253) TCGA-BR-8680-01 13 41134849 41134849 T C FOXO1 Missense_Mutation p.N260S 0.30 tolerated(0.71) probably_damaging(0.992) TCGA-BR-8680-01 13 41134955 41134955 G A FOXO1 Missense_Mutation p.R225C 0.25 deleterious(0) probably_damaging(0.997) TCGA-BR-8680-01 13 41705387 41705387 G A KBTBD6 Missense_Mutation p.R421C 0.35 tolerated(0.22) benign(0.009) TCGA-BR-8680-01 13 41808045 41808045 T G MTRF1 Missense_Mutation p.R323S 0.23 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 13 41893022 41893022 C T NAA16 Missense_Mutation p.R74C 0.26 deleterious(0.01) benign(0.161) TCGA-BR-8680-01 13 41932600 41932600 A C NAA16 Missense_Mutation p.K416N 0.26 deleterious(0) possibly_damaging(0.831) TCGA-BR-8680-01 13 42277525 42277525 A G VWA8 Missense_Mutation p.F1047L 0.35 tolerated(0.67) benign(0.002) TCGA-BR-8680-01 13 42293761 42293761 C T VWA8 Missense_Mutation p.G1028R 0.39 deleterious(0) probably_damaging(0.981) TCGA-BR-8680-01 13 42460062 42460062 T G VWA8 Missense_Mutation p.Q323H 0.37 tolerated(0.25) benign(0.004) TCGA-BR-8680-01 13 43896586 43896586 C A ENOX1 Nonsense_Mutation p.E399* 0.37 TCGA-BR-8680-01 13 44411430 44411430 C A CCDC122 Nonsense_Mutation p.G270* 0.28 TCGA-BR-8680-01 13 45010797 45010797 A C TSC22D1 Intron 0.36 TCGA-BR-8680-01 13 45149181 45149181 G A TSC22D1 Missense_Mutation p.P344S 0.26 tolerated(0.1) benign(0.006) TCGA-BR-8680-01 13 45914178 45914178 T G TPT1 Missense_Mutation p.S82R 0.33 deleterious(0.04) benign(0.093) TCGA-BR-8680-01 13 46559794 46559794 C T ZC3H13 Missense_Mutation p.R453Q 0.33 unknown(0) TCGA-BR-8680-01 13 46563119 46563119 C A ZC3H13 Missense_Mutation p.R353I 0.43 unknown(0) TCGA-BR-8680-01 13 46638872 46638872 C T CPB2 Missense_Mutation p.R236Q 0.41 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 13 46653021 46653021 C A CPB2 Nonsense_Mutation p.E134* 0.33 TCGA-BR-8680-01 13 46733037 46733037 C T LCP1 Missense_Mutation p.R51Q 0.31 deleterious(0) probably_damaging(0.939) TCGA-BR-8680-01 13 47266769 47266769 C T LRCH1 Silent p.P371P 0.39 TCGA-BR-8680-01 13 47297460 47297460 C T LRCH1 Missense_Mutation p.R622C 0.29 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 13 47315828 47315828 C T LRCH1 Nonsense_Mutation p.R713* 0.32 TCGA-BR-8680-01 13 47470120 47470120 T C HTR2A 5'UTR 0.44 TCGA-BR-8680-01 13 48615235 48615235 A C NUDT15 Missense_Mutation p.E113A 0.36 deleterious(0) probably_damaging(0.997) TCGA-BR-8680-01 13 48620041 48620041 C A NUDT15 3'UTR 0.33 TCGA-BR-8680-01 13 48651207 48651207 T G MED4 3'UTR 0.15 TCGA-BR-8680-01 13 48830320 48830320 A G ITM2B Missense_Mutation p.D85G 0.25 tolerated(0.42) benign(0.001) TCGA-BR-8680-01 13 49281629 49281629 C T CYSLTR2 Missense_Mutation p.R226W 0.29 deleterious(0.05) probably_damaging(0.998) TCGA-BR-8680-01 13 49775978 49775978 A G FNDC3A Silent p.V1010V 0.39 TCGA-BR-8680-01 13 49925041 49925041 C T CAB39L Missense_Mutation p.A135T 0.27 tolerated(0.16) benign(0.001) TCGA-BR-8680-01 13 50123608 50123608 C T RCBTB1 Missense_Mutation p.R344H 0.30 deleterious(0.02) benign(0.032) TCGA-BR-8680-01 13 50587166 50587166 T G TRIM13 Missense_Mutation p.F367V 0.35 tolerated(0.53) benign(0.001) TCGA-BR-8680-01 13 50623163 50623163 C T MIR16-1 RNA 0.33 TCGA-BR-8680-01 13 52439685 52439685 T G CCDC70 Missense_Mutation p.I57M 0.35 tolerated(0.11) benign(0.28) TCGA-BR-8680-01 13 52511798 52511798 G T ATP7B Silent p.V1239V 0.35 TCGA-BR-8680-01 13 52518371 52518371 G T ATP7B Silent p.V1039V 0.30 TCGA-BR-8680-01 13 52593158 52593158 T A ALG11 Missense_Mutation p.L52I 0.33 tolerated(0.41) benign(0.008) TCGA-BR-8680-01 13 52684696 52684696 T C NEK5 Silent p.V110V 0.34 TCGA-BR-8680-01 13 53035861 53035861 A C CKAP2 Missense_Mutation p.K301N 0.33 tolerated(0.06) possibly_damaging(0.787) TCGA-BR-8680-01 13 60240703 60240703 A T DIAPH3 3'UTR 0.44 TCGA-BR-8680-01 13 60565365 60565365 C A DIAPH3 Nonsense_Mutation p.E430* 0.25 TCGA-BR-8680-01 13 60590074 60590074 C T DIAPH3 Silent p.Q248Q 0.22 TCGA-BR-8680-01 13 61034550 61034550 C T TDRD3 Missense_Mutation p.R77C 0.36 deleterious(0) probably_damaging(0.998) TCGA-BR-8680-01 13 61103068 61103068 T C TDRD3 Missense_Mutation p.V570A 0.35 tolerated(0.46) benign(0.004) TCGA-BR-8680-01 13 61103094 61103094 C T TDRD3 Nonsense_Mutation p.R579* 0.40 TCGA-BR-8680-01 13 61986425 61986425 C A PCDH20 Nonsense_Mutation p.E603* 0.37 TCGA-BR-8680-01 13 67800785 67800785 C T PCDH9 Silent p.V596V 0.28 TCGA-BR-8680-01 13 67802424 67802424 G T PCDH9 Missense_Mutation p.S50Y 0.25 deleterious(0.01) probably_damaging(0.934) TCGA-BR-8680-01 13 70275762 70275762 C A KLHL1 3'UTR 0.35 TCGA-BR-8680-01 13 72204778 72204778 T G DACH1 Missense_Mutation p.K348Q 0.40 probably_damaging(1) TCGA-BR-8680-01 13 72440841 72440841 A G DACH1 Missense_Mutation p.S23P 0.39 unknown(0) TCGA-BR-8680-01 13 73347916 73347916 C T DIS3 Missense_Mutation p.R382Q 0.28 deleterious(0.01) benign(0.021) TCGA-BR-8680-01 13 73547748 73547748 T C PIBF1 Missense_Mutation p.S662P 0.34 tolerated(0.07) probably_damaging(0.994) TCGA-BR-8680-01 13 76104344 76104344 A C COMMD6 Missense_Mutation p.L38R 0.34 deleterious(0) benign(0.105) TCGA-BR-8680-01 13 76393550 76393550 C T LMO7 Missense_Mutation p.R463C 0.37 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 13 77751940 77751940 G T MYCBP2 Missense_Mutation p.F1723L 0.42 benign(0.117) TCGA-BR-8680-01 13 77817210 77817210 T G MYCBP2 Missense_Mutation p.R833S 0.28 probably_damaging(0.961) TCGA-BR-8680-01 13 78178498 78178498 G T SCEL Missense_Mutation p.D369Y 0.37 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-BR-8680-01 13 78188041 78188041 C A SCEL Missense_Mutation p.L468I 0.30 tolerated(0.05) possibly_damaging(0.699) TCGA-BR-8680-01 13 78472431 78472431 T C EDNRB Silent p.K501K 0.28 TCGA-BR-8680-01 13 84453915 84453915 C A SLITRK1 Missense_Mutation p.E576D 0.37 tolerated(0.6) benign(0.008) TCGA-BR-8680-01 13 84453995 84453995 C T SLITRK1 Missense_Mutation p.E550K 0.12 tolerated(0.16) benign(0.001) TCGA-BR-8680-01 13 84454115 84454115 G T SLITRK1 Missense_Mutation p.P510T 0.32 deleterious(0.01) possibly_damaging(0.661) TCGA-BR-8680-01 13 84454919 84454919 C T SLITRK1 Missense_Mutation p.E242K 0.37 deleterious(0) probably_damaging(0.988) TCGA-BR-8680-01 13 84455355 84455355 T G SLITRK1 Missense_Mutation p.E96D 0.34 tolerated(0.88) benign(0.003) TCGA-BR-8680-01 13 84455509 84455509 T - SLITRK1 Frame_Shift_Del p.K45Rfs*64 0.27 TCGA-BR-8680-01 13 88328019 88328019 C A SLITRK5 Missense_Mutation p.H126N 0.37 tolerated(1) benign(0.001) TCGA-BR-8680-01 13 88328996 88328996 C T SLITRK5 Silent p.R451R 0.33 TCGA-BR-8680-01 13 88329437 88329437 C T SLITRK5 Silent p.F598F 0.27 TCGA-BR-8680-01 13 94958302 94958302 T G GPC6 Missense_Mutation p.N359K 0.30 tolerated(0.8) benign(0.216) TCGA-BR-8680-01 13 95114332 95114332 T C DCT Missense_Mutation p.I325M 0.34 deleterious(0) possibly_damaging(0.908) TCGA-BR-8680-01 13 95840745 95840745 C T ABCC4 Missense_Mutation p.E439K 0.25 deleterious(0.05) benign(0.042) TCGA-BR-8680-01 13 96212483 96212483 C T CLDN10 Silent p.V106V 0.42 TCGA-BR-8680-01 13 96293613 96293613 T G DZIP1 Missense_Mutation p.K178T 0.50 deleterious(0) possibly_damaging(0.891) TCGA-BR-8680-01 13 98828929 98828929 G A RNF113B Missense_Mutation p.R188C 0.40 deleterious(0) probably_damaging(0.972) TCGA-BR-8680-01 13 98896956 98896956 T G FARP1 Intron 0.35 TCGA-BR-8680-01 13 99115970 99115970 C T STK24 Missense_Mutation p.D314N 0.32 tolerated(0.15) benign(0.004) TCGA-BR-8680-01 13 99358407 99358407 G A SLC15A1 Missense_Mutation p.T417I 0.38 tolerated(0.43) benign(0.02) TCGA-BR-8680-01 13 99505740 99505740 G A DOCK9 Missense_Mutation p.R1290C 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8680-01 13 99532212 99532212 A C DOCK9 Missense_Mutation p.F961L 0.35 deleterious(0.03) benign(0.281) TCGA-BR-8680-01 14 100801193 100801193 A C WARS 3'UTR 0.27 TCGA-BR-8680-01 14 101448346 101448346 A T SNORD114-21 RNA 0.35 TCGA-BR-8680-01 14 101491968 101491968 G A MIR1197 RNA 0.32 TCGA-BR-8680-01 14 101512287 101512287 C T MIR381 RNA 0.27 TCGA-BR-8680-01 14 101520682 101520682 T G MIR382 RNA 0.27 TCGA-BR-8680-01 14 101528414 101528414 C T MIR377 RNA 0.31 TCGA-BR-8680-01 14 102481480 102481480 G A DYNC1H1 Silent p.A2351A 0.38 TCGA-BR-8680-01 14 102676053 102676053 C T WDR20 Nonsense_Mutation p.R547* 0.30 TCGA-BR-8680-01 14 102973383 102973383 C T ANKRD9 Missense_Mutation p.A282T 0.33 deleterious(0) possibly_damaging(0.477) TCGA-BR-8680-01 14 103341991 103341991 A C TRAF3 Missense_Mutation p.I110L 0.34 tolerated(0.12) benign(0.012) TCGA-BR-8680-01 14 103474857 103474857 A C CDC42BPB Missense_Mutation p.I101M 0.47 deleterious(0) possibly_damaging(0.833) TCGA-BR-8680-01 14 103474861 103474861 C T CDC42BPB Missense_Mutation p.R100Q 0.20 tolerated(0.17) benign(0.029) TCGA-BR-8680-01 14 103803470 103803470 G A EIF5 Silent p.K115K 0.32 TCGA-BR-8680-01 14 103871548 103871548 G A MARK3 Missense_Mutation p.G63S 0.38 tolerated(0.08) probably_damaging(1) TCGA-BR-8680-01 14 104174984 104174984 G A XRCC3 Missense_Mutation p.S23L 0.34 deleterious(0) possibly_damaging(0.85) TCGA-BR-8680-01 14 104484456 104484456 C A TDRD9 Missense_Mutation p.L787I 0.50 deleterious(0.05) benign(0.323) TCGA-BR-8680-01 14 104570738 104570738 G A ASPG Missense_Mutation p.R284Q 0.32 tolerated(0.27) benign(0.006) TCGA-BR-8680-01 14 105360682 105360682 G A CEP170B Silent p.E1444E 0.35 TCGA-BR-8680-01 14 105410777 105410777 C T AHNAK2 Missense_Mutation p.D3671N 0.31 benign(0.003) TCGA-BR-8680-01 14 106067880 106067880 G A IGHE Silent p.L62L 0.31 TCGA-BR-8680-01 14 106208487 106208487 C T IGHG1 Missense_Mutation p.R138Q 0.30 tolerated(0.4) benign(0.224) TCGA-BR-8680-01 14 106478340 106478340 T C IGHV4-4 Missense_Mutation p.T40A 0.44 deleterious_low_confidence(0) possibly_damaging(0.491) TCGA-BR-8680-01 14 106539380 106539380 G A IGHV1-8 Missense_Mutation p.A17V 0.24 tolerated(1) benign(0.003) TCGA-BR-8680-01 14 106573429 106573429 T C IGHV3-11 Missense_Mutation p.Y52C 0.30 tolerated_low_confidence(0.11) benign(0.438) TCGA-BR-8680-01 14 106733326 106733326 G A IGHV1-24 Nonsense_Mutation p.R57* 0.37 TCGA-BR-8680-01 14 106845354 106845354 G A IGHV3-35 Missense_Mutation p.A107V 0.30 tolerated_low_confidence(0.16) benign(0.11) TCGA-BR-8680-01 14 107013178 107013178 G A IGHV3-49 Silent p.L39L 0.33 TCGA-BR-8680-01 14 107083703 107083703 C T IGHV4-59 5'UTR 0.30 TCGA-BR-8680-01 14 19378253 19378253 A C OR11H12 Missense_Mutation p.L220F 0.19 tolerated(0.06) possibly_damaging(0.469) TCGA-BR-8680-01 14 20002239 20002239 T G POTEM Missense_Mutation p.N395H 0.11 deleterious(0) possibly_damaging(0.521) TCGA-BR-8680-01 14 20019848 20019848 C T POTEM Missense_Mutation p.D125N 0.31 tolerated(0.07) possibly_damaging(0.881) TCGA-BR-8680-01 14 20215602 20215602 G T OR4Q3 Missense_Mutation p.D6Y 0.36 tolerated(0.16) benign(0.34) TCGA-BR-8680-01 14 20344641 20344641 C T OR4K2 Missense_Mutation p.S72F 0.35 tolerated(0.12) probably_damaging(0.934) TCGA-BR-8680-01 14 20388847 20388847 T C OR4K5 Missense_Mutation p.F28L 0.31 tolerated(0.15) benign(0.033) TCGA-BR-8680-01 14 20403995 20403995 C T OR4K1 Missense_Mutation p.S57F 0.29 deleterious(0) probably_damaging(0.933) TCGA-BR-8680-01 14 20444053 20444053 T A OR4K15 Missense_Mutation p.F126I 0.35 deleterious(0) possibly_damaging(0.889) TCGA-BR-8680-01 14 20586157 20586157 C T OR4K17 Missense_Mutation p.P198S 0.34 deleterious(0.01) probably_damaging(0.919) TCGA-BR-8680-01 14 20692668 20692668 C T OR11H6 Missense_Mutation p.S267F 0.36 tolerated(0.11) benign(0.151) TCGA-BR-8680-01 14 20767028 20767028 A G TTC5 Silent p.Y189Y 0.34 TCGA-BR-8680-01 14 20825671 20825671 C T PARP2 Silent p.F528F 0.25 TCGA-BR-8680-01 14 20848099 20848099 C A TEP1 Missense_Mutation p.R1706I 0.44 deleterious(0.01) possibly_damaging(0.472) TCGA-BR-8680-01 14 20848577 20848577 C T TEP1 Missense_Mutation p.R1607H 0.06 tolerated(0.63) benign(0.001) TCGA-BR-8680-01 14 20854649 20854649 C T TEP1 Missense_Mutation p.D940N 0.29 deleterious(0) probably_damaging(0.987) TCGA-BR-8680-01 14 21051974 21051974 A T RNASE11 3'UTR 0.33 TCGA-BR-8680-01 14 21167907 21167907 C T RNASE4 Missense_Mutation p.A126V 0.25 tolerated(0.23) benign(0.07) TCGA-BR-8680-01 14 21216071 21216071 A G EDDM3A Missense_Mutation p.N111S 0.36 tolerated(0.2) benign(0.096) TCGA-BR-8680-01 14 21458737 21458737 A C METTL17 Missense_Mutation p.K115T 0.31 tolerated(0.07) benign(0.105) TCGA-BR-8680-01 14 21511513 21511513 A T RNASE7 Missense_Mutation p.Y121F 0.14 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 14 21541393 21541393 G A ARHGEF40 Missense_Mutation p.E65K 0.43 deleterious(0) probably_damaging(0.952) TCGA-BR-8680-01 14 21756217 21756217 A G RPGRIP1 Missense_Mutation p.K28E 0.28 tolerated(0.51) benign(0.352) TCGA-BR-8680-01 14 21792917 21792917 G A RPGRIP1 Missense_Mutation p.A635T 0.32 deleterious(0.01) probably_damaging(1) TCGA-BR-8680-01 14 21992741 21992741 T G SALL2 Missense_Mutation p.K374T 0.36 deleterious(0) probably_damaging(0.989) TCGA-BR-8680-01 14 22038511 22038511 T C OR10G3 Missense_Mutation p.D122G 0.39 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 14 22090578 22090578 T C TRAV1-1 Missense_Mutation p.F62L 0.34 tolerated(0.44) benign(0.008) TCGA-BR-8680-01 14 22205231 22205231 G A TRAV4 Missense_Mutation p.D99N 0.40 deleterious(0) probably_damaging(0.997) TCGA-BR-8680-01 14 22309740 22309740 G A TRAV12-1 Missense_Mutation p.A41T 0.31 tolerated(0.17) benign(0.031) TCGA-BR-8680-01 14 22337448 22337448 G A TRAV13-1 Missense_Mutation p.R80Q 0.35 deleterious(0.01) probably_damaging(0.933) TCGA-BR-8680-01 14 22409795 22409795 G T TRAV9-2 Missense_Mutation p.E95D 0.31 deleterious(0.01) benign(0.361) TCGA-BR-8680-01 14 22616073 22616073 C A TRAV27 Missense_Mutation p.L10I 0.39 deleterious(0.05) benign(0.17) TCGA-BR-8680-01 14 22690359 22690359 C A TRAV35 Missense_Mutation p.F106L 0.31 tolerated(0.59) benign(0.012) TCGA-BR-8680-01 14 22991016 22991016 T C TRAJ22 Missense_Mutation p.%3D 0.36 TCGA-BR-8680-01 14 23020791 23020791 A G AE000662.92 5'Flank 0.27 TCGA-BR-8680-01 14 23021009 23021009 T G AE000662.92 5'Flank 0.47 TCGA-BR-8680-01 14 23306019 23306019 C A MMP14 5'UTR 0.30 TCGA-BR-8680-01 14 23314568 23314568 C T MMP14 Silent p.S470S 0.29 TCGA-BR-8680-01 14 23512164 23512164 C A PSMB11 Missense_Mutation p.L244M 0.28 tolerated(0.05) possibly_damaging(0.713) TCGA-BR-8680-01 14 23551042 23551042 T G ACIN1 Missense_Mutation p.K205T 0.25 benign(0.197) TCGA-BR-8680-01 14 23745818 23745818 T C HOMEZ Missense_Mutation p.T207A 0.31 tolerated(1) benign(0.001) TCGA-BR-8680-01 14 23863388 23863388 G A MYH6 Silent p.F858F 0.39 TCGA-BR-8680-01 14 23869930 23869930 G A MYH6 Silent p.F466F 0.32 TCGA-BR-8680-01 14 23876239 23876239 T G MYH6 Missense_Mutation p.N65T 0.30 tolerated(0.1) benign(0.003) TCGA-BR-8680-01 14 23885495 23885495 C A MYH7 Missense_Mutation p.K1557N 0.35 deleterious(0) possibly_damaging(0.639) TCGA-BR-8680-01 14 23893979 23893979 G A MYH7 Missense_Mutation p.A893V 0.62 deleterious(0) possibly_damaging(0.846) TCGA-BR-8680-01 14 23946730 23946730 A C NGDN Missense_Mutation p.K297Q 0.29 deleterious(0.02) unknown(0) TCGA-BR-8680-01 14 24033302 24033302 C T AP1G2 Silent p.R348R 0.35 TCGA-BR-8680-01 14 24034396 24034396 G A AP1G2 Missense_Mutation p.R252C 0.36 deleterious(0.01) probably_damaging(0.982) TCGA-BR-8680-01 14 24537875 24537875 C A LRRC16B Silent p.L1255L 0.41 TCGA-BR-8680-01 14 25100413 25100413 G A GZMB Missense_Mutation p.S203F 0.21 deleterious(0.01) probably_damaging(0.983) TCGA-BR-8680-01 14 26949193 26949193 C T NOVA1 Missense_Mutation p.R146H 0.37 tolerated(0.15) unknown(0) TCGA-BR-8680-01 14 26949194 26949194 G A NOVA1 Missense_Mutation p.R146C 0.30 deleterious(0) unknown(0) TCGA-BR-8680-01 14 28734250 28734250 T G BNIP3P1 RNA 0.33 TCGA-BR-8680-01 14 30068276 30068276 T C PRKD1 Missense_Mutation p.K708R 0.34 deleterious(0.02) probably_damaging(0.994) TCGA-BR-8680-01 14 30100207 30100207 A C PRKD1 Missense_Mutation p.I471M 0.25 deleterious(0) probably_damaging(0.983) TCGA-BR-8680-01 14 30107713 30107713 C T PRKD1 Missense_Mutation p.E323K 0.06 deleterious(0) probably_damaging(0.992) TCGA-BR-8680-01 14 31085717 31085717 A C G2E3 Missense_Mutation p.S700R 0.42 tolerated_low_confidence(0.19) benign(0.002) TCGA-BR-8680-01 14 31581680 31581680 G A HECTD1 Silent p.L2074L 0.27 TCGA-BR-8680-01 14 31583209 31583209 C A HECTD1 Missense_Mutation p.K1910N 0.24 tolerated_low_confidence(0.07) benign(0.027) TCGA-BR-8680-01 14 31590701 31590701 C T HECTD1 Missense_Mutation p.R1709H 0.25 tolerated(0.09) benign(0.009) TCGA-BR-8680-01 14 31641112 31641112 T C HECTD1 Silent p.S429S 0.27 TCGA-BR-8680-01 14 31816982 31816982 G A HEATR5A Missense_Mutation p.A654V 0.24 deleterious(0) benign(0.093) TCGA-BR-8680-01 14 31827881 31827881 G T HEATR5A Silent p.L498L 0.27 TCGA-BR-8680-01 14 33016131 33016131 T G AKAP6 Missense_Mutation p.S758A 0.28 tolerated(0.25) benign(0.005) TCGA-BR-8680-01 14 33293854 33293854 G T AKAP6 Missense_Mutation p.D2279Y 0.39 deleterious_low_confidence(0.03) benign(0.332) TCGA-BR-8680-01 14 33684409 33684409 G T NPAS3 Missense_Mutation p.E54D 0.24 deleterious(0) benign(0.217) TCGA-BR-8680-01 14 35222877 35222877 G A BAZ1A Missense_Mutation p.S1503L 0.41 deleterious(0) probably_damaging(0.995) TCGA-BR-8680-01 14 35482598 35482598 C T SRP54 Missense_Mutation p.A228V 0.24 deleterious(0) possibly_damaging(0.658) TCGA-BR-8680-01 14 36005199 36005199 G T INSM2 3'UTR 0.28 TCGA-BR-8680-01 14 36074888 36074888 A G RALGAPA1 Silent p.F1813F 0.34 TCGA-BR-8680-01 14 36096544 36096544 C T RALGAPA1 Silent p.Q1697Q 0.28 TCGA-BR-8680-01 14 36123671 36123671 T C RALGAPA1 Missense_Mutation p.T1331A 0.47 tolerated(0.64) benign(0.153) TCGA-BR-8680-01 14 36339751 36339751 A C BRMS1L 3'UTR 0.32 TCGA-BR-8680-01 14 37145483 37145483 G A PAX9 Silent p.S284S 0.26 TCGA-BR-8680-01 14 37283144 37283144 C T SLC25A21 Missense_Mutation p.R61Q 0.30 tolerated(0.46) benign(0.168) TCGA-BR-8680-01 14 37736309 37736309 G A MIPOL1 Silent p.T62T 0.26 TCGA-BR-8680-01 14 37737950 37737950 A C MIPOL1 Silent p.I113I 0.40 TCGA-BR-8680-01 14 38311636 38311636 T C TTC6 3'UTR 0.29 TCGA-BR-8680-01 14 38724535 38724535 G A CLEC14A Silent p.I231I 0.32 TCGA-BR-8680-01 14 39556144 39556144 A G SEC23A Silent p.P224P 0.31 TCGA-BR-8680-01 14 39716573 39716573 G A MIA2 Silent p.E265E 0.33 TCGA-BR-8680-01 14 39716613 39716613 G T MIA2 Nonsense_Mutation p.E279* 0.35 TCGA-BR-8680-01 14 39870682 39870682 C T FBXO33 Missense_Mutation p.R365Q 0.32 tolerated(0.07) benign(0.005) TCGA-BR-8680-01 14 39870866 39870866 G A FBXO33 Nonsense_Mutation p.R304* 0.33 TCGA-BR-8680-01 14 45398097 45398097 A G KLHL28 3'UTR 0.31 TCGA-BR-8680-01 14 45431763 45431763 A C FAM179B Missense_Mutation p.N47H 0.34 deleterious_low_confidence(0) possibly_damaging(0.784) TCGA-BR-8680-01 14 45432816 45432816 T C FAM179B Silent p.L398L 0.31 TCGA-BR-8680-01 14 45433587 45433587 G T FAM179B Nonsense_Mutation p.G655* 0.34 TCGA-BR-8680-01 14 45587237 45587237 T C FKBP3 Missense_Mutation p.D205G 0.32 tolerated(0.33) possibly_damaging(0.896) TCGA-BR-8680-01 14 45606351 45606351 T C FANCM Silent p.N196N 0.27 TCGA-BR-8680-01 14 45618133 45618133 A C FANCM Missense_Mutation p.K285Q 0.38 tolerated(0.45) benign(0.002) TCGA-BR-8680-01 14 45645419 45645419 T C FANCM Silent p.S1154S 0.35 TCGA-BR-8680-01 14 47342659 47342659 T C MDGA2 Missense_Mutation p.Y910C 0.34 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 14 47343401 47343401 C A MDGA2 Nonsense_Mutation p.E814* 0.38 TCGA-BR-8680-01 14 47600940 47600940 G A MDGA2 Missense_Mutation p.S301L 0.32 tolerated(0.37) benign(0.004) TCGA-BR-8680-01 14 50087971 50087971 C A MGAT2 5'UTR 0.30 TCGA-BR-8680-01 14 50100024 50100024 A G DNAAF2 Missense_Mutation p.V615A 0.26 tolerated(0.09) benign(0.029) TCGA-BR-8680-01 14 51099045 51099045 G T ATL1 Missense_Mutation p.K555N 0.25 tolerated_low_confidence(0.34) unknown(0) TCGA-BR-8680-01 14 51101883 51101883 A C SAV1 3'UTR 0.35 TCGA-BR-8680-01 14 51239123 51239123 G A NIN Missense_Mutation p.R293W 0.29 deleterious(0) probably_damaging(0.979) TCGA-BR-8680-01 14 51345491 51345491 G T ABHD12B Missense_Mutation p.K87N 0.34 deleterious(0.01) possibly_damaging(0.832) TCGA-BR-8680-01 14 51464662 51464662 G T TRIM9 Intron 0.55 TCGA-BR-8680-01 14 51475949 51475949 A C TRIM9 Missense_Mutation p.I385M 0.32 deleterious(0) probably_damaging(0.942) TCGA-BR-8680-01 14 52174833 52174833 A G FRMD6 Missense_Mutation p.H199R 0.21 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 14 52793970 52793970 G A PTGER2 Missense_Mutation p.R292Q 0.33 tolerated(0.45) benign(0.009) TCGA-BR-8680-01 14 53331516 53331516 G T FERMT2 Silent p.L443L 0.25 TCGA-BR-8680-01 14 53513383 53513383 A C DDHD1 3'UTR 0.36 TCGA-BR-8680-01 14 54950455 54950455 C T GMFB Missense_Mutation p.E12K 0.32 tolerated(0.14) benign(0.067) TCGA-BR-8680-01 14 55455824 55455824 T G WDHD1 Missense_Mutation p.N483T 0.06 deleterious(0) probably_damaging(0.937) TCGA-BR-8680-01 14 55844739 55844739 T G ATG14 Missense_Mutation p.K350T 0.07 deleterious(0.01) possibly_damaging(0.534) TCGA-BR-8680-01 14 56078947 56078947 A C KTN1 Missense_Mutation p.K61Q 0.28 deleterious(0.01) probably_damaging(1) TCGA-BR-8680-01 14 56099965 56099965 C T KTN1 Missense_Mutation p.R412C 0.42 deleterious(0.01) benign(0.249) TCGA-BR-8680-01 14 56117309 56117309 C T KTN1 Missense_Mutation p.A840V 0.28 tolerated(0.17) benign(0.015) TCGA-BR-8680-01 14 56137449 56137449 T G KTN1 Missense_Mutation p.S1090R 0.37 deleterious(0.03) benign(0.252) TCGA-BR-8680-01 14 57083995 57083995 A C TMEM260 Missense_Mutation p.K346Q 0.29 deleterious(0.01) benign(0.155) TCGA-BR-8680-01 14 57092214 57092214 T C TMEM260 Missense_Mutation p.F505L 0.33 deleterious(0) benign(0.123) TCGA-BR-8680-01 14 57675371 57675371 G A EXOC5 Missense_Mutation p.R695C 0.24 deleterious(0.02) probably_damaging(0.945) TCGA-BR-8680-01 14 58030738 58030738 A G SLC35F4 3'UTR 0.33 TCGA-BR-8680-01 14 58814545 58814545 C T ARID4A Silent p.I451I 0.30 TCGA-BR-8680-01 14 58831856 58831856 C T ARID4A Nonsense_Mutation p.R1017* 0.33 TCGA-BR-8680-01 14 58875730 58875730 A C TIMM9 3'UTR 0.32 TCGA-BR-8680-01 14 58932632 58932632 T G KIAA0586 Missense_Mutation p.H766Q 0.31 tolerated(0.19) benign(0.067) TCGA-BR-8680-01 14 59930948 59930948 C T GPR135 Missense_Mutation p.V333I 0.22 deleterious(0.01) probably_damaging(0.927) TCGA-BR-8680-01 14 59965469 59965469 C T JKAMP Silent p.Y161Y 0.27 TCGA-BR-8680-01 14 60063484 60063484 G A RTN1 Silent p.G770G 0.26 TCGA-BR-8680-01 14 60619866 60619866 A G DHRS7 Missense_Mutation p.S142P 0.26 deleterious(0) probably_damaging(0.985) TCGA-BR-8680-01 14 60921733 60921733 T C C14orf39 Missense_Mutation p.I497V 0.34 tolerated(0.32) benign(0) TCGA-BR-8680-01 14 60950485 60950485 C T C14orf39 Missense_Mutation p.E53K 0.30 deleterious(0.03) possibly_damaging(0.81) TCGA-BR-8680-01 14 61180839 61180839 G T SIX4 Missense_Mutation p.F544L 0.27 deleterious(0.03) benign(0.051) TCGA-BR-8680-01 14 62207347 62207347 T C HIF1A Splice_Site p.X577_splice 0.24 TCGA-BR-8680-01 14 62567180 62567180 C T SYT16 Missense_Mutation p.R565W 0.25 deleterious(0.01) probably_damaging(1) TCGA-BR-8680-01 14 63671620 63671620 C T RHOJ Silent p.C11C 0.27 TCGA-BR-8680-01 14 64006376 64006376 A G PPP2R5E Missense_Mutation p.S10P 0.20 tolerated(0.4) benign(0.133) TCGA-BR-8680-01 14 64408676 64408676 G A SYNE2 Missense_Mutation p.R104Q 0.29 benign(0.028) TCGA-BR-8680-01 14 64453263 64453263 A C SYNE2 Missense_Mutation p.E747D 0.44 benign(0.299) TCGA-BR-8680-01 14 64460662 64460662 G A SYNE2 Missense_Mutation p.S919N 0.28 benign(0.436) TCGA-BR-8680-01 14 64461803 64461803 A C SYNE2 Missense_Mutation p.K941N 0.47 benign(0.031) TCGA-BR-8680-01 14 64461861 64461861 A C SYNE2 Missense_Mutation p.N961H 0.08 probably_damaging(1) TCGA-BR-8680-01 14 64473812 64473812 G T SYNE2 Missense_Mutation p.E1483D 0.31 probably_damaging(0.998) TCGA-BR-8680-01 14 64542723 64542723 C T SYNE2 Nonsense_Mutation p.R3643* 0.30 TCGA-BR-8680-01 14 64588782 64588782 T G SYNE2 Missense_Mutation p.F4404C 0.39 benign(0.009) TCGA-BR-8680-01 14 64727353 64727353 G A ESR2 Missense_Mutation p.R256W 0.26 deleterious(0.01) possibly_damaging(0.462) TCGA-BR-8680-01 14 64915014 64915014 T G MTHFD1 Missense_Mutation p.V753G 0.08 deleterious(0) possibly_damaging(0.843) TCGA-BR-8680-01 14 65054078 65054078 T C PPP1R36 Missense_Mutation p.F293S 0.31 tolerated(0.07) possibly_damaging(0.799) TCGA-BR-8680-01 14 65198128 65198128 A G PLEKHG3 Missense_Mutation p.Y244C 0.35 tolerated(0.06) possibly_damaging(0.46) TCGA-BR-8680-01 14 65417720 65417720 A G RAB15 Silent p.D132D 0.33 TCGA-BR-8680-01 14 68040045 68040045 C T PLEKHH1 Missense_Mutation p.T594M 0.16 tolerated(0.1) possibly_damaging(0.705) TCGA-BR-8680-01 14 68060613 68060613 A G PIGH Silent p.Y79Y 0.31 TCGA-BR-8680-01 14 68200673 68200673 G A RDH12 3'UTR 0.38 TCGA-BR-8680-01 14 70235601 70235601 G A SRSF5 Missense_Mutation p.R95Q 0.32 tolerated(0.39) benign(0.115) TCGA-BR-8680-01 14 70252992 70252992 G A SLC10A1 Missense_Mutation p.A130V 0.26 deleterious(0) probably_damaging(0.936) TCGA-BR-8680-01 14 70497047 70497047 C T SMOC1 3'UTR 0.40 TCGA-BR-8680-01 14 70633946 70633946 G T SLC8A3 Silent p.V398V 0.34 TCGA-BR-8680-01 14 70713935 70713935 A C ADAM21P1 RNA 0.12 TCGA-BR-8680-01 14 70713986 70713986 C T ADAM21P1 RNA 0.29 TCGA-BR-8680-01 14 70924659 70924659 T G ADAM21 Missense_Mutation p.I148S 0.30 tolerated(0.51) possibly_damaging(0.648) TCGA-BR-8680-01 14 70989418 70989418 T G ADAM20 Missense_Mutation p.N736T 0.25 tolerated(0.59) benign(0.005) TCGA-BR-8680-01 14 71443701 71443701 A G PCNX Missense_Mutation p.D216G 0.33 tolerated(0.14) probably_damaging(0.999) TCGA-BR-8680-01 14 71455316 71455316 C T PCNX Missense_Mutation p.R782C 0.32 deleterious(0.01) possibly_damaging(0.77) TCGA-BR-8680-01 14 71555976 71555976 C T PCNX Nonsense_Mutation p.R1836* 0.33 TCGA-BR-8680-01 14 72169083 72169083 C T SIPA1L1 Intron 0.30 TCGA-BR-8680-01 14 72818878 72818878 T G RGS6 Missense_Mutation p.S54A 0.28 deleterious(0.03) benign(0.144) TCGA-BR-8680-01 14 72941367 72941367 G A RGS6 Missense_Mutation p.R218Q 0.33 deleterious(0.05) benign(0.011) TCGA-BR-8680-01 14 72941375 72941375 C T RGS6 Nonsense_Mutation p.R221* 0.31 TCGA-BR-8680-01 14 73413857 73413857 C T DCAF4 Missense_Mutation p.S229L 0.32 deleterious(0.01) possibly_damaging(0.631) TCGA-BR-8680-01 14 73464805 73464805 G A ZFYVE1 Silent p.I234I 0.35 TCGA-BR-8680-01 14 73563732 73563732 A C RBM25 Missense_Mutation p.Y218S 0.37 probably_damaging(0.914) TCGA-BR-8680-01 14 73685857 73685857 T G PSEN1 Missense_Mutation p.L422V 0.34 deleterious(0.02) probably_damaging(0.933) TCGA-BR-8680-01 14 73732141 73732141 G A PAPLN Missense_Mutation p.M1036I 0.28 deleterious(0) benign(0.009) TCGA-BR-8680-01 14 74186171 74186171 A G ELMSAN1 Missense_Mutation p.S991P 0.42 tolerated(0.41) benign(0.001) TCGA-BR-8680-01 14 74404367 74404367 C A FAM161B Nonsense_Mutation p.E598* 0.38 TCGA-BR-8680-01 14 74404379 74404379 C A FAM161B Nonsense_Mutation p.E594* 0.30 TCGA-BR-8680-01 14 75266073 75266073 A G YLPM1 Missense_Mutation p.E1358G 0.30 benign(0.318) TCGA-BR-8680-01 14 75329808 75329808 T G PROX2 Missense_Mutation p.K244Q 0.42 tolerated(0.43) benign(0.075) TCGA-BR-8680-01 14 75330161 75330161 C A PROX2 Missense_Mutation p.R126M 0.37 deleterious(0.01) probably_damaging(0.946) TCGA-BR-8680-01 14 75513607 75513607 C A MLH3 Missense_Mutation p.D918Y 0.35 deleterious(0) possibly_damaging(0.482) TCGA-BR-8680-01 14 75537991 75537991 A C ZC2HC1C Missense_Mutation p.K239Q 0.42 deleterious(0.01) possibly_damaging(0.801) TCGA-BR-8680-01 14 75747600 75747600 A G FOS Missense_Mutation p.I206V 0.28 tolerated(0.08) benign(0.003) TCGA-BR-8680-01 14 76117817 76117817 G A C14orf1 3'UTR 0.27 TCGA-BR-8680-01 14 76330084 76330084 T C TTLL5 Missense_Mutation p.V1134A 0.24 tolerated(0.4) benign(0.001) TCGA-BR-8680-01 14 76420869 76420869 G T TTLL5 3'UTR 0.30 TCGA-BR-8680-01 14 76549621 76549621 G A IFT43 Missense_Mutation p.E171K 0.23 deleterious(0.02) probably_damaging(0.991) TCGA-BR-8680-01 14 76905998 76905998 G A ESRRB Missense_Mutation p.R101H 0.29 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 14 77236322 77236322 T G VASH1 Missense_Mutation p.V109G 0.24 deleterious(0) probably_damaging(0.996) TCGA-BR-8680-01 14 77580408 77580408 G A CIPC Missense_Mutation p.R316H 0.28 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 14 77746389 77746389 A G POMT2 Missense_Mutation p.F587S 0.11 deleterious(0.01) benign(0.011) TCGA-BR-8680-01 14 77844125 77844125 T G SAMD15 Missense_Mutation p.L122V 0.35 tolerated(0.11) possibly_damaging(0.493) TCGA-BR-8680-01 14 77873032 77873032 T G NOXRED1 Intron 0.39 TCGA-BR-8680-01 14 78198843 78198843 G T SNW1 Nonsense_Mutation p.Y292* 0.29 TCGA-BR-8680-01 14 78227284 78227284 G A C14orf178 5'UTR 0.36 TCGA-BR-8680-01 14 79454449 79454449 C A NRXN3 Missense_Mutation p.S703Y 0.30 deleterious(0) benign(0.011) TCGA-BR-8680-01 14 81259399 81259399 C T CEP128 Missense_Mutation p.R422Q 0.30 tolerated(1) benign(0.001) TCGA-BR-8680-01 14 81575097 81575097 A C TSHR Intron 0.43 TCGA-BR-8680-01 14 81606118 81606118 T C TSHR Missense_Mutation p.L263P 0.31 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 14 86088405 86088405 C A FLRT2 Missense_Mutation p.Q183K 0.33 tolerated(0.32) benign(0.017) TCGA-BR-8680-01 14 86090018 86090018 C A FLRT2 3'UTR 0.31 TCGA-BR-8680-01 14 88400934 88400934 A G GALC 3'UTR 0.43 TCGA-BR-8680-01 14 88416242 88416242 T C GALC Missense_Mutation p.K429E 0.30 deleterious(0.03) benign(0.077) TCGA-BR-8680-01 14 88478212 88478212 G T GPR65 3'UTR 0.28 TCGA-BR-8680-01 14 88945316 88945316 G A PTPN21 Missense_Mutation p.S820L 0.33 deleterious(0.02) benign(0.003) TCGA-BR-8680-01 14 89087177 89087177 C A EML5 Nonsense_Mutation p.E1766* 0.32 TCGA-BR-8680-01 14 90429695 90429695 C T TDP1 Silent p.S79S 0.29 TCGA-BR-8680-01 14 90651298 90651298 C T KCNK13 Missense_Mutation p.A393V 0.32 deleterious(0.01) possibly_damaging(0.889) TCGA-BR-8680-01 14 91760555 91760555 C A CCDC88C Missense_Mutation p.E1358D 0.33 deleterious(0) probably_damaging(0.997) TCGA-BR-8680-01 14 91779779 91779779 G A CCDC88C Missense_Mutation p.A794V 0.28 tolerated(0.06) benign(0.14) TCGA-BR-8680-01 14 92047212 92047212 G T CATSPERB 3'UTR 0.39 TCGA-BR-8680-01 14 92088254 92088254 T G CATSPERB Missense_Mutation p.D653A 0.39 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 14 92139258 92139258 G A CATSPERB Missense_Mutation p.L361F 0.32 deleterious(0) probably_damaging(0.974) TCGA-BR-8680-01 14 92491676 92491676 C T TRIP11 Missense_Mutation p.R97Q 0.20 tolerated(0.09) possibly_damaging(0.712) TCGA-BR-8680-01 14 92530710 92530710 G T ATXN3 Missense_Mutation p.S347Y 0.33 deleterious(0.02) benign(0.027) TCGA-BR-8680-01 14 92609458 92609458 A G CPSF2 Silent p.V320V 0.42 TCGA-BR-8680-01 14 93263988 93263988 A C GOLGA5 Missense_Mutation p.N69T 0.29 tolerated(0.1) benign(0.008) TCGA-BR-8680-01 14 93301978 93301978 C T GOLGA5 Missense_Mutation p.R674C 0.23 deleterious(0) probably_damaging(0.994) TCGA-BR-8680-01 14 93303754 93303754 G A GOLGA5 Missense_Mutation p.R692Q 0.30 deleterious(0) probably_damaging(0.997) TCGA-BR-8680-01 14 93673210 93673210 T C C14orf142 Missense_Mutation p.H58R 0.34 tolerated(0.14) benign(0.071) TCGA-BR-8680-01 14 93673258 93673258 T C C14orf142 Missense_Mutation p.D42G 0.44 deleterious(0.04) benign(0.037) TCGA-BR-8680-01 14 93686640 93686640 G A UBR7 Missense_Mutation p.D336N 0.29 deleterious(0) probably_damaging(0.993) TCGA-BR-8680-01 14 94071295 94071295 G A UNC79 Intron 0.45 TCGA-BR-8680-01 14 94088081 94088081 C A UNC79 Missense_Mutation p.S1324Y 0.29 deleterious_low_confidence(0) possibly_damaging(0.843) TCGA-BR-8680-01 14 94394942 94394942 A G FAM181A Missense_Mutation p.Y166C 0.25 tolerated(0.18) benign(0.004) TCGA-BR-8680-01 14 94405676 94405676 C T ASB2 Silent p.A465A 0.30 TCGA-BR-8680-01 14 94464410 94464410 C T LINC00521 RNA 0.31 TCGA-BR-8680-01 14 94707088 94707091 TTTC - PPP4R4 Frame_Shift_Del p.S312Yfs*5 0.39 TCGA-BR-8680-01 14 94750174 94750174 G A SERPINA10 3'UTR 0.27 TCGA-BR-8680-01 14 94914614 94914614 A C SERPINA11 Missense_Mutation p.F166L 0.38 tolerated(0.08) probably_damaging(0.999) TCGA-BR-8680-01 14 94929505 94929505 G A SERPINA9 Silent p.F411F 0.41 TCGA-BR-8680-01 14 94964562 94964562 T G SERPINA12 Missense_Mutation p.K58T 0.41 deleterious(0.02) possibly_damaging(0.724) TCGA-BR-8680-01 14 95033396 95033396 C T SERPINA4 Silent p.L247L 0.25 TCGA-BR-8680-01 14 95556795 95556795 T G DICER1 3'UTR 0.41 TCGA-BR-8680-01 14 95660901 95660901 C T CLMN Missense_Mutation p.R914Q 0.26 tolerated(0.05) probably_damaging(0.999) TCGA-BR-8680-01 14 95903210 95903210 C T SYNE3 Missense_Mutation p.A829T 0.38 tolerated(0.07) benign(0.135) TCGA-BR-8680-01 14 96010292 96010292 G T GLRX5 Missense_Mutation p.D102Y 0.12 deleterious(0.03) probably_damaging(0.967) TCGA-BR-8680-01 14 96730670 96730670 G A BDKRB1 Silent p.A217A 0.29 TCGA-BR-8680-01 14 97010496 97010496 C T PAPOLA Missense_Mutation p.R434C 0.37 tolerated(0.33) benign(0.007) TCGA-BR-8680-01 15 100533305 100533305 G A ADAMTS17 Missense_Mutation p.A966V 0.26 tolerated(0.28) benign(0.004) TCGA-BR-8680-01 15 100672288 100672288 A G ADAMTS17 Missense_Mutation p.W549R 0.24 deleterious(0.02) benign(0.034) TCGA-BR-8680-01 15 101432808 101432808 T C ALDH1A3 Missense_Mutation p.W147R 0.29 deleterious(0) probably_damaging(0.994) TCGA-BR-8680-01 15 101775542 101775542 A C CHSY1 Missense_Mutation p.S187R 0.42 tolerated(0.08) possibly_damaging(0.566) TCGA-BR-8680-01 15 102346172 102346172 G A OR4F6 Missense_Mutation p.D84N 0.30 deleterious_low_confidence(0.02) possibly_damaging(0.634) TCGA-BR-8680-01 15 102346599 102346599 A C OR4F6 Missense_Mutation p.Q226P 0.30 tolerated_low_confidence(0.06) possibly_damaging(0.797) TCGA-BR-8680-01 15 102346821 102346821 G T OR4F6 Missense_Mutation p.R300I 0.18 deleterious_low_confidence(0) possibly_damaging(0.853) TCGA-BR-8680-01 15 20490503 20490503 G T CHEK2P2 Splice_Site 0.07 TCGA-BR-8680-01 15 20496610 20496610 G A CHEK2P2 RNA 0.12 TCGA-BR-8680-01 15 20642567 20642567 G A HERC2P3 RNA 0.15 TCGA-BR-8680-01 15 20663159 20663159 C T HERC2P3 RNA 0.26 TCGA-BR-8680-01 15 22382966 22382966 G A OR4N4 Missense_Mutation p.R165H 0.20 tolerated(0.64) benign(0.006) TCGA-BR-8680-01 15 22867565 22867565 C A TUBGCP5 Missense_Mutation p.H881N 0.40 deleterious(0) probably_damaging(0.995) TCGA-BR-8680-01 15 23014503 23014503 G A NIPA2 Silent p.F74F 0.24 TCGA-BR-8680-01 15 23260833 23260833 G A GOLGA8I Missense_Mutation p.G205D 0.23 tolerated(0.23) benign(0.053) TCGA-BR-8680-01 15 23412214 23412214 C A RP11-467N20.5 Missense_Mutation p.K81N 0.24 benign(0.377) TCGA-BR-8680-01 15 25222096 25222096 G T SNRPN Missense_Mutation p.V114L 0.30 tolerated(0.36) benign(0.026) TCGA-BR-8680-01 15 25226930 25226930 G A SNRPN 3'Flank 0.56 TCGA-BR-8680-01 15 25429502 25429502 A C SNORD115-8 RNA 0.12 TCGA-BR-8680-01 15 25490503 25490503 T C SNORD115-40 3'Flank 0.38 TCGA-BR-8680-01 15 25961884 25961884 C T ATP10A Missense_Mutation p.R590Q 0.33 deleterious(0.05) benign(0.379) TCGA-BR-8680-01 15 26866631 26866631 G A GABRB3 Silent p.L97L 0.28 TCGA-BR-8680-01 15 27114458 27114458 C A GABRA5 Silent p.S21S 0.30 TCGA-BR-8680-01 15 27128679 27128679 G A GABRA5 Missense_Mutation p.D158N 0.52 tolerated(0.57) probably_damaging(0.991) TCGA-BR-8680-01 15 27222237 27222237 A G GABRG3 Missense_Mutation p.T48A 0.36 deleterious(0) probably_damaging(0.989) TCGA-BR-8680-01 15 28200318 28200318 C A OCA2 Nonsense_Mutation p.E610* 0.29 TCGA-BR-8680-01 15 28377829 28377829 G A HERC2 Silent p.S4126S 0.39 TCGA-BR-8680-01 15 28386977 28386977 G A HERC2 Missense_Mutation p.R3906C 0.36 possibly_damaging(0.513) TCGA-BR-8680-01 15 28408287 28408287 C T HERC2 Missense_Mutation p.D3567N 0.28 benign(0.005) TCGA-BR-8680-01 15 28446651 28446651 T C HERC2 Missense_Mutation p.D2556G 0.28 probably_damaging(0.983) TCGA-BR-8680-01 15 28459021 28459021 C T HERC2 Missense_Mutation p.R2218H 0.27 possibly_damaging(0.813) TCGA-BR-8680-01 15 28501325 28501325 C T HERC2 Missense_Mutation p.A886T 0.32 probably_damaging(0.943) TCGA-BR-8680-01 15 28538116 28538116 C A HERC2 Missense_Mutation p.E80D 0.31 benign(0.054) TCGA-BR-8680-01 15 28629528 28629528 G T GOLGA8F Nonsense_Mutation p.E253* 0.27 TCGA-BR-8680-01 15 28999647 28999647 G A WHAMMP2 RNA 0.27 TCGA-BR-8680-01 15 29092258 29092258 G A GOLGA6L7P RNA 0.53 TCGA-BR-8680-01 15 29406145 29406145 G A APBA2 Missense_Mutation p.E702K 0.32 deleterious(0) probably_damaging(0.97) TCGA-BR-8680-01 15 30008950 30008950 C T TJP1 Missense_Mutation p.R1356Q 0.23 tolerated_low_confidence(0.07) possibly_damaging(0.701) TCGA-BR-8680-01 15 30034875 30034875 C A TJP1 Missense_Mutation p.R374I 0.32 deleterious(0.03) benign(0.016) TCGA-BR-8680-01 15 31294611 31294611 C T TRPM1 Missense_Mutation p.G1448D 0.34 tolerated_low_confidence(0.18) benign(0.004) TCGA-BR-8680-01 15 31319267 31319267 C T TRPM1 Missense_Mutation p.R1133Q 0.32 deleterious(0.01) probably_damaging(0.98) TCGA-BR-8680-01 15 31339355 31339355 T G TRPM1 Missense_Mutation p.N592H 0.10 tolerated(0.29) benign(0.007) TCGA-BR-8680-01 15 31352771 31352771 G T TRPM1 Silent p.I430I 0.32 TCGA-BR-8680-01 15 32449835 32449835 G A CHRNA7 Missense_Mutation p.D182N 0.57 tolerated(0.08) probably_damaging(0.931) TCGA-BR-8680-01 15 32916429 32916429 C T ARHGAP11A Missense_Mutation p.A118V 0.34 deleterious(0) probably_damaging(0.995) TCGA-BR-8680-01 15 33194156 33194156 T G FMN1 Missense_Mutation p.T932P 0.25 deleterious(0.01) probably_damaging(0.976) TCGA-BR-8680-01 15 33831637 33831637 G A RYR3 Missense_Mutation p.V174I 0.28 probably_damaging(0.998) TCGA-BR-8680-01 15 33905384 33905384 G A RYR3 Missense_Mutation p.G722D 0.30 probably_damaging(1) TCGA-BR-8680-01 15 33920748 33920748 A C RYR3 Missense_Mutation p.K884T 0.34 probably_damaging(0.993) TCGA-BR-8680-01 15 34072456 34072456 C T RYR3 Missense_Mutation p.A3061V 0.30 probably_damaging(0.96) TCGA-BR-8680-01 15 34113011 34113011 G A RYR3 Missense_Mutation p.E3605K 0.31 benign(0.083) TCGA-BR-8680-01 15 34130137 34130137 C T RYR3 Missense_Mutation p.P3986S 0.26 probably_damaging(1) TCGA-BR-8680-01 15 34146651 34146651 G A RYR3 Splice_Site p.X4620_splice 0.33 TCGA-BR-8680-01 15 34445233 34445233 G A KATNBL1 Missense_Mutation p.R66C 0.33 tolerated(0.19) benign(0.001) TCGA-BR-8680-01 15 34628879 34628879 C T SLC12A6 Translation_Start_Site p.M1? 0.30 deleterious_low_confidence(0) benign(0) TCGA-BR-8680-01 15 34678852 34678852 G A GOLGA8A Nonsense_Mutation p.R87* 0.16 TCGA-BR-8680-01 15 34819754 34819754 G T GOLGA8B 3'UTR 0.26 TCGA-BR-8680-01 15 35045244 35045244 C - GJD2 Frame_Shift_Del p.G134Afs*17 0.29 TCGA-BR-8680-01 15 35236561 35236561 T G AQR Missense_Mutation p.E133D 0.30 tolerated(0.39) benign(0.003) TCGA-BR-8680-01 15 37110228 37110228 T G CSNK1A1P1 RNA 0.52 TCGA-BR-8680-01 15 38617009 38617009 A C SPRED1 Missense_Mutation p.Q141P 0.38 tolerated(0.39) benign(0.004) TCGA-BR-8680-01 15 39544598 39544598 T C C15orf54 Missense_Mutation p.S88P 0.36 tolerated_low_confidence(0.12) possibly_damaging(0.737) TCGA-BR-8680-01 15 39882122 39882122 C T THBS1 Silent p.G681G 0.30 TCGA-BR-8680-01 15 40057945 40057945 C A FSIP1 Nonsense_Mutation p.E105* 0.14 TCGA-BR-8680-01 15 40093323 40093323 A G GPR176 3'UTR 0.30 TCGA-BR-8680-01 15 40280268 40280268 C T EIF2AK4 Nonsense_Mutation p.R830* 0.24 TCGA-BR-8680-01 15 40462836 40462836 A C BUB1B Missense_Mutation p.K113T 0.27 tolerated(0.08) benign(0.026) TCGA-BR-8680-01 15 40504751 40504751 G T BUB1B Nonsense_Mutation p.E813* 0.37 TCGA-BR-8680-01 15 40564537 40564537 C T PAK6 Missense_Mutation p.S324L 0.34 tolerated(0.08) benign(0.002) TCGA-BR-8680-01 15 40684192 40684192 G A KNSTRN Missense_Mutation p.E264K 0.30 deleterious(0.02) benign(0.184) TCGA-BR-8680-01 15 40913959 40913959 T A CASC5 Missense_Mutation p.F525L 0.31 tolerated(0.36) benign(0.009) TCGA-BR-8680-01 15 40914552 40914552 C A CASC5 Missense_Mutation p.S723Y 0.27 deleterious(0.01) possibly_damaging(0.804) TCGA-BR-8680-01 15 40916289 40916289 A G CASC5 Missense_Mutation p.Q1302R 0.28 tolerated(0.79) benign(0) TCGA-BR-8680-01 15 41043667 41043667 C T RMDN3 Missense_Mutation p.A161T 0.34 deleterious(0.04) probably_damaging(1) TCGA-BR-8680-01 15 41387799 41387799 C T INO80 Silent p.K127K 0.35 TCGA-BR-8680-01 15 41554990 41554990 T G CHP1 Silent p.T86T 0.39 TCGA-BR-8680-01 15 41797252 41797252 C T LTK Missense_Mutation p.A646T 0.35 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-BR-8680-01 15 42021440 42021440 C T MGA Nonsense_Mutation p.R1246* 0.31 TCGA-BR-8680-01 15 42442027 42442027 G A PLA2G4F Missense_Mutation p.R315C 0.27 deleterious(0.04) benign(0.246) TCGA-BR-8680-01 15 42442820 42442820 G A PLA2G4F Silent p.L253L 0.32 TCGA-BR-8680-01 15 42651959 42651959 T C CAPN3 5'UTR 0.30 TCGA-BR-8680-01 15 42691806 42691806 G A CAPN3 Missense_Mutation p.R437H 0.34 tolerated(0.05) probably_damaging(0.997) TCGA-BR-8680-01 15 43044235 43044235 G A TTBK2 Missense_Mutation p.S1070L 0.32 deleterious(0) benign(0.098) TCGA-BR-8680-01 15 43044613 43044613 C T TTBK2 Missense_Mutation p.R944Q 0.29 deleterious(0) probably_damaging(0.961) TCGA-BR-8680-01 15 43508531 43508531 T C EPB42 Missense_Mutation p.Y74C 0.35 tolerated(0.06) benign(0.001) TCGA-BR-8680-01 15 43584953 43584953 A C TGM7 Silent p.T131T 0.37 TCGA-BR-8680-01 15 43620802 43620802 A C LCMT2 Missense_Mutation p.I629S 0.29 deleterious(0) possibly_damaging(0.544) TCGA-BR-8680-01 15 43988539 43988539 G T CKMT1A Missense_Mutation p.R285I 0.20 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 15 44811443 44811443 C A CTDSPL2 Missense_Mutation p.L397I 0.39 deleterious(0) probably_damaging(0.988) TCGA-BR-8680-01 15 44944095 44944095 C T SPG11 Silent p.K350K 0.41 TCGA-BR-8680-01 15 45059668 45059668 C A TRIM69 Silent p.R401R 0.34 TCGA-BR-8680-01 15 45365719 45365719 G T SORD Missense_Mutation p.Q355H 0.29 deleterious(0.04) benign(0.007) TCGA-BR-8680-01 15 45404761 45404761 C - DUOX2 Frame_Shift_Del p.V106Sfs*12 0.16 TCGA-BR-8680-01 15 45428767 45428767 C T DUOX1 Silent p.F322F 0.35 TCGA-BR-8680-01 15 45443388 45443388 C T DUOX1 Silent p.L986L 0.38 TCGA-BR-8680-01 15 45464037 45464037 C A SHF Intron 0.41 TCGA-BR-8680-01 15 45656125 45656125 G A GATM Missense_Mutation p.P378S 0.40 tolerated(0.42) benign(0.011) TCGA-BR-8680-01 15 45707949 45707949 G T SPATA5L1 Missense_Mutation p.E603D 0.28 deleterious(0) probably_damaging(0.987) TCGA-BR-8680-01 15 45722962 45722962 T G C15orf48 5'UTR 0.22 TCGA-BR-8680-01 15 48053386 48053386 G A SEMA6D Missense_Mutation p.R105Q 0.28 deleterious(0.02) probably_damaging(0.999) TCGA-BR-8680-01 15 48580336 48580336 G A SLC12A1 Missense_Mutation p.G909D 0.55 deleterious(0.05) probably_damaging(0.996) TCGA-BR-8680-01 15 48633866 48633866 C T DUT Intron 0.36 TCGA-BR-8680-01 15 48703309 48703309 T G FBN1 Missense_Mutation p.S2832R 0.26 benign(0.013) TCGA-BR-8680-01 15 48703477 48703477 G A FBN1 Nonsense_Mutation p.R2776* 0.35 TCGA-BR-8680-01 15 48776091 48776091 G A FBN1 Silent p.C1254C 0.28 TCGA-BR-8680-01 15 49422913 49422913 T C COPS2 Intron 0.25 TCGA-BR-8680-01 15 49436464 49436464 A C COPS2 Missense_Mutation p.F69C 0.30 deleterious(0) probably_damaging(0.995) TCGA-BR-8680-01 15 49663591 49663591 C T FAM227B Missense_Mutation p.D340N 0.39 tolerated(0.16) benign(0.147) TCGA-BR-8680-01 15 49716732 49716732 G A FGF7 Missense_Mutation p.D80N 0.36 deleterious(0) benign(0.294) TCGA-BR-8680-01 15 49776720 49776720 G T FGF7 3'UTR 0.27 TCGA-BR-8680-01 15 49869835 49869835 C A FAM227B Missense_Mutation p.K144N 0.45 deleterious(0) probably_damaging(0.972) TCGA-BR-8680-01 15 50489750 50489750 T C SLC27A2 Missense_Mutation p.S178P 0.27 deleterious(0.05) benign(0.033) TCGA-BR-8680-01 15 50578152 50578152 G A GABPB1 Intron 0.33 TCGA-BR-8680-01 15 50578206 50578206 A C GABPB1 Intron 0.39 TCGA-BR-8680-01 15 50838687 50838687 G A USP50 Silent p.F12F 0.34 TCGA-BR-8680-01 15 50853889 50853889 G A TRPM7 Missense_Mutation p.R1862C 0.32 deleterious_low_confidence(0) possibly_damaging(0.53) TCGA-BR-8680-01 15 50878618 50878618 C T TRPM7 Missense_Mutation p.R1486K 0.42 tolerated_low_confidence(1) benign(0) TCGA-BR-8680-01 15 50906354 50906354 C T TRPM7 Missense_Mutation p.R534Q 0.31 deleterious(0) probably_damaging(0.972) TCGA-BR-8680-01 15 51755589 51755589 C A DMXL2 Missense_Mutation p.R2638I 0.21 deleterious(0) possibly_damaging(0.867) TCGA-BR-8680-01 15 51763435 51763435 A C DMXL2 Missense_Mutation p.D2459E 0.30 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 15 51791197 51791197 T G DMXL2 Missense_Mutation p.E1408D 0.32 tolerated(1) benign(0) TCGA-BR-8680-01 15 51828437 51828437 C T DMXL2 Missense_Mutation p.R747Q 0.35 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 15 52069169 52069169 C T TMOD2 Silent p.F149F 0.32 TCGA-BR-8680-01 15 52161468 52161468 A G TMOD3 Missense_Mutation p.T61A 0.29 deleterious(0.01) benign(0.12) TCGA-BR-8680-01 15 52539151 52539151 G A MYO5C Nonsense_Mutation p.R648* 0.24 TCGA-BR-8680-01 15 53991950 53991950 T C WDR72 Missense_Mutation p.T588A 0.36 deleterious(0) probably_damaging(0.979) TCGA-BR-8680-01 15 54306969 54306969 A G UNC13C Silent p.E623E 0.28 TCGA-BR-8680-01 15 54307519 54307519 G A UNC13C Missense_Mutation p.A807T 0.41 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BR-8680-01 15 54556537 54556537 C T UNC13C Missense_Mutation p.A1207V 0.32 tolerated_low_confidence(0.99) possibly_damaging(0.849) TCGA-BR-8680-01 15 54707232 54707232 C A UNC13C Missense_Mutation p.L1634I 0.26 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-BR-8680-01 15 54914612 54914612 T C UNC13C Missense_Mutation p.V2065A 0.31 deleterious_low_confidence(0) benign(0.43) TCGA-BR-8680-01 15 55651558 55651558 T G CCPG1 Intron 0.35 TCGA-BR-8680-01 15 55651945 55651945 C T CCPG1 Missense_Mutation p.E676K 0.32 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 15 55759140 55759140 G T DYX1C1 Missense_Mutation p.L209I 0.23 tolerated(0.22) benign(0.006) TCGA-BR-8680-01 15 55839078 55839078 G A PYGO1 Missense_Mutation p.P135S 0.39 tolerated(0.06) probably_damaging(0.996) TCGA-BR-8680-01 15 55930813 55930813 G A PRTG Nonsense_Mutation p.R796* 0.31 TCGA-BR-8680-01 15 55965788 55965788 G A PRTG Missense_Mutation p.R545W 0.28 deleterious(0) probably_damaging(0.992) TCGA-BR-8680-01 15 55974623 55974623 A T PRTG Nonsense_Mutation p.C205* 0.36 TCGA-BR-8680-01 15 56132713 56132713 A C NEDD4 Missense_Mutation p.F1002V 0.35 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 15 56152638 56152638 T C NEDD4 Silent p.G656G 0.30 TCGA-BR-8680-01 15 56208417 56208417 T G NEDD4 Missense_Mutation p.N205H 0.36 tolerated_low_confidence(0.24) benign(0.007) TCGA-BR-8680-01 15 56388113 56388113 G A RFX7 Missense_Mutation p.R605C 0.30 deleterious_low_confidence(0.01) probably_damaging(0.931) TCGA-BR-8680-01 15 56981268 56981268 G T ZNF280D Missense_Mutation p.L251I 0.21 deleterious(0.04) probably_damaging(0.998) TCGA-BR-8680-01 15 56981585 56981585 C T ZNF280D Missense_Mutation p.E195K 0.43 tolerated(0.07) possibly_damaging(0.529) TCGA-BR-8680-01 15 57730212 57730212 C T CGNL1 Silent p.F5F 0.38 TCGA-BR-8680-01 15 58253409 58253409 G A ALDH1A2 Silent p.L445L 0.27 TCGA-BR-8680-01 15 58284967 58284967 G A ALDH1A2 Missense_Mutation p.T245M 0.29 deleterious(0.01) possibly_damaging(0.743) TCGA-BR-8680-01 15 58724178 58724178 C A LIPC Intron 0.17 TCGA-BR-8680-01 15 59347967 59347967 G A RNF111 Missense_Mutation p.R365H 0.32 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BR-8680-01 15 59387260 59387260 T C RNF111 3'UTR 0.35 TCGA-BR-8680-01 15 59499489 59499489 G A LDHAL6B Missense_Mutation p.G117D 0.25 deleterious(0.01) possibly_damaging(0.848) TCGA-BR-8680-01 15 59499969 59499969 A G LDHAL6B Missense_Mutation p.K277R 0.40 tolerated(0.08) benign(0.035) TCGA-BR-8680-01 15 59501008 59501008 C T MYO1E Missense_Mutation p.A468T 0.33 deleterious(0.01) probably_damaging(1) TCGA-BR-8680-01 15 59752247 59752247 G A FAM81A Missense_Mutation p.A46T 0.32 tolerated(0.29) probably_damaging(0.99) TCGA-BR-8680-01 15 60803545 60803545 G T RORA Missense_Mutation p.L267I 0.40 tolerated(0.06) benign(0.168) TCGA-BR-8680-01 15 62146720 62146720 C T VPS13C Missense_Mutation p.R3733K 0.33 deleterious_low_confidence(0.04) possibly_damaging(0.643) TCGA-BR-8680-01 15 62155716 62155716 T G VPS13C Missense_Mutation p.K3625N 0.29 deleterious(0.02) benign(0.174) TCGA-BR-8680-01 15 62202485 62202485 T G VPS13C Missense_Mutation p.E2912A 0.30 tolerated(0.06) probably_damaging(1) TCGA-BR-8680-01 15 62214690 62214690 C T VPS13C Missense_Mutation p.R2294Q 0.32 tolerated(0.05) benign(0.059) TCGA-BR-8680-01 15 62243142 62243142 A G VPS13C Splice_Site p.X1512_splice 0.39 TCGA-BR-8680-01 15 62325718 62325718 C A VPS13C Nonsense_Mutation p.E103* 0.38 TCGA-BR-8680-01 15 62327210 62327210 C T VPS13C Missense_Mutation p.E77K 0.27 deleterious(0.01) probably_damaging(0.928) TCGA-BR-8680-01 15 63029190 63029190 C T TLN2 Nonsense_Mutation p.R1158* 0.34 TCGA-BR-8680-01 15 63353934 63353934 G T TPM1 Intron 0.30 TCGA-BR-8680-01 15 63571506 63571506 G A APH1B Missense_Mutation p.R87Q 0.29 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 15 63967065 63967065 C T HERC1 Missense_Mutation p.R2441Q 0.35 benign(0.062) TCGA-BR-8680-01 15 63986349 63986349 C T HERC1 Missense_Mutation p.A1830T 0.33 possibly_damaging(0.844) TCGA-BR-8680-01 15 64010809 64010809 T G HERC1 Missense_Mutation p.E1314D 0.29 benign(0.001) TCGA-BR-8680-01 15 64687596 64687596 G T TRIP4 Splice_Site p.X91_splice 0.41 TCGA-BR-8680-01 15 64966811 64966811 A C ZNF609 Missense_Mutation p.K586N 0.34 tolerated(0.25) possibly_damaging(0.888) TCGA-BR-8680-01 15 65223053 65223053 C T ANKDD1A Missense_Mutation p.R202W 0.43 tolerated(0.12) benign(0.082) TCGA-BR-8680-01 15 65226337 65226337 A C ANKDD1A Missense_Mutation p.K257T 0.29 tolerated(0.1) probably_damaging(0.93) TCGA-BR-8680-01 15 65268842 65268842 T G SPG21 Missense_Mutation p.K93Q 0.39 tolerated(0.06) benign(0.411) TCGA-BR-8680-01 15 65450097 65450097 T G CLPX Missense_Mutation p.E348D 0.32 tolerated(0.33) benign(0.075) TCGA-BR-8680-01 15 65489827 65489827 C A CILP Missense_Mutation p.D933Y 0.27 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 15 65490661 65490661 G A CILP Missense_Mutation p.R655W 0.26 deleterious(0) probably_damaging(0.997) TCGA-BR-8680-01 15 65954164 65954164 G T DENND4A 3'UTR 0.36 TCGA-BR-8680-01 15 65962413 65962413 G A DENND4A Silent p.F1525F 0.30 TCGA-BR-8680-01 15 65968830 65968830 C A DENND4A Missense_Mutation p.R1440I 0.29 tolerated(0.12) benign(0.01) TCGA-BR-8680-01 15 65983414 65983414 T G DENND4A Missense_Mutation p.E1172A 0.39 tolerated(0.08) benign(0.005) TCGA-BR-8680-01 15 66044740 66044740 C T DENND4A Missense_Mutation p.D180N 0.30 deleterious(0.03) possibly_damaging(0.484) TCGA-BR-8680-01 15 66416290 66416290 G T MEGF11 Silent p.I49I 0.22 TCGA-BR-8680-01 15 66811286 66811286 T G ZWILCH Silent p.V130V 0.07 TCGA-BR-8680-01 15 66850086 66850086 T C LCTL Missense_Mutation p.Y299C 0.36 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 15 67629323 67629323 C T IQCH Missense_Mutation p.S133L 0.25 tolerated(0.18) benign(0.001) TCGA-BR-8680-01 15 68583466 68583466 A C FEM1B Missense_Mutation p.K590N 0.23 tolerated(0.09) benign(0.007) TCGA-BR-8680-01 15 69339194 69339194 C A NOX5 Missense_Mutation p.F560L 0.25 tolerated(0.44) benign(0.004) TCGA-BR-8680-01 15 70344723 70344723 G A TLE3 Silent p.F708F 0.25 TCGA-BR-8680-01 15 70960067 70960067 C T UACA Missense_Mutation p.A986T 0.23 tolerated(0.16) benign(0.035) TCGA-BR-8680-01 15 70960325 70960325 T C UACA Missense_Mutation p.I900V 0.43 tolerated(1) benign(0.001) TCGA-BR-8680-01 15 71433815 71433815 A C THSD4 5'UTR 0.50 TCGA-BR-8680-01 15 72492905 72492905 G A PKM Missense_Mutation p.R467C 0.29 deleterious(0.01) probably_damaging(0.947) TCGA-BR-8680-01 15 72511433 72511433 C T PKM Silent p.S2S 0.31 TCGA-BR-8680-01 15 72987519 72987519 G T BBS4 Missense_Mutation p.R9I 0.21 tolerated_low_confidence(0.2) benign(0.013) TCGA-BR-8680-01 15 73595121 73595121 G A NEO1 3'UTR 0.33 TCGA-BR-8680-01 15 73866030 73866030 C T NPTN Nonsense_Mutation p.W271* 0.26 TCGA-BR-8680-01 15 74032415 74032415 C T C15orf59 Missense_Mutation p.R242H 0.35 tolerated(0.57) benign(0.032) TCGA-BR-8680-01 15 74241881 74241881 C T LOXL1 Missense_Mutation p.R562C 0.31 deleterious(0) probably_damaging(0.996) TCGA-BR-8680-01 15 74290724 74290724 G A PML Missense_Mutation p.R170H 0.34 deleterious(0.03) probably_damaging(0.981) TCGA-BR-8680-01 15 75014767 75014767 G A CYP1A1 Silent p.F224F 0.31 TCGA-BR-8680-01 15 75137250 75137250 T G SCAMP2 3'UTR 0.39 TCGA-BR-8680-01 15 75500865 75500865 G A C15orf39 Missense_Mutation p.D826N 0.25 deleterious(0.05) benign(0.012) TCGA-BR-8680-01 15 75562507 75562507 C T GOLGA6C Silent p.I683I 0.33 TCGA-BR-8680-01 15 75595026 75595026 C T DNM1P34 RNA 0.35 TCGA-BR-8680-01 15 75664355 75664355 G A SIN3A Missense_Mutation p.R1263C 0.30 deleterious(0.02) benign(0.446) TCGA-BR-8680-01 15 75893539 75893539 C A SNUPN Missense_Mutation p.K233N 0.37 tolerated(0.12) benign(0.224) TCGA-BR-8680-01 15 75941999 75941999 T C SNX33 Missense_Mutation p.F186L 0.27 deleterious(0.04) probably_damaging(0.952) TCGA-BR-8680-01 15 75969500 75969500 G A CSPG4 Missense_Mutation p.A1787V 0.50 tolerated(0.29) benign(0.01) TCGA-BR-8680-01 15 77425509 77425509 G A PEAK1 Silent p.C1305C 0.40 TCGA-BR-8680-01 15 77471135 77471135 A C PEAK1 Missense_Mutation p.L1045R 0.35 tolerated(0.21) benign(0.006) TCGA-BR-8680-01 15 78214104 78214104 C A RP11-114H24.7 Intron 0.32 TCGA-BR-8680-01 15 78390311 78390311 C T SH2D7 Nonsense_Mutation p.R103* 0.41 TCGA-BR-8680-01 15 78562971 78562971 T G DNAJA4 Missense_Mutation p.F118V 0.38 deleterious(0.01) possibly_damaging(0.767) TCGA-BR-8680-01 15 78568044 78568044 G A DNAJA4 Missense_Mutation p.R313Q 0.43 deleterious(0.02) possibly_damaging(0.79) TCGA-BR-8680-01 15 78770698 78770698 C T IREB2 Nonsense_Mutation p.R419* 0.30 TCGA-BR-8680-01 15 79059228 79059228 C T ADAMTS7 Missense_Mutation p.G1009S 0.27 tolerated(0.06) possibly_damaging(0.677) TCGA-BR-8680-01 15 79172918 79172918 A C MORF4L1 Missense_Mutation p.K51T 0.28 deleterious(0) probably_damaging(0.987) TCGA-BR-8680-01 15 79307749 79307749 A C RASGRF1 Missense_Mutation p.C582W 0.28 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 15 79323837 79323837 G A RASGRF1 Silent p.I389I 0.29 TCGA-BR-8680-01 15 79339308 79339308 G A RASGRF1 Missense_Mutation p.R220W 0.38 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 15 79748821 79748821 A C KIAA1024 Missense_Mutation p.K111T 0.40 tolerated(0.5) benign(0.169) TCGA-BR-8680-01 15 79749039 79749039 G T KIAA1024 Nonsense_Mutation p.E184* 0.32 TCGA-BR-8680-01 15 81188291 81188291 A C KIAA1199 Missense_Mutation p.K434T 0.32 tolerated(0.14) benign(0.017) TCGA-BR-8680-01 15 81241258 81241258 A C KIAA1199 Missense_Mutation p.K1360T 0.31 deleterious_low_confidence(0.03) unknown(0) TCGA-BR-8680-01 15 81294772 81294772 T C MESDC1 Missense_Mutation p.S54P 0.33 deleterious(0.02) possibly_damaging(0.858) TCGA-BR-8680-01 15 81625178 81625178 G A TMC3 Missense_Mutation p.S962F 0.34 deleterious_low_confidence(0.03) possibly_damaging(0.897) TCGA-BR-8680-01 15 82336352 82336352 C T MEX3B Missense_Mutation p.D287N 0.32 tolerated(0.05) possibly_damaging(0.447) TCGA-BR-8680-01 15 82444040 82444040 C A EFTUD1 Nonsense_Mutation p.E919* 0.34 TCGA-BR-8680-01 15 82444245 82444245 A G EFTUD1 Silent p.G850G 0.33 TCGA-BR-8680-01 15 82554130 82554130 T G EFTUD1 5'UTR 0.28 TCGA-BR-8680-01 15 83358164 83358164 G T AP3B2 Missense_Mutation p.S52Y 0.31 deleterious(0) benign(0.27) TCGA-BR-8680-01 15 83428055 83428055 G A FSD2 3'UTR 0.17 TCGA-BR-8680-01 15 83561463 83561463 G A HOMER2 Missense_Mutation p.R46W 0.31 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 15 83698921 83698921 C T BTBD1 Missense_Mutation p.R341H 0.31 deleterious(0) benign(0.384) TCGA-BR-8680-01 15 83805426 83805426 A C TM6SF1 3'UTR 0.34 TCGA-BR-8680-01 15 83926276 83926276 G A BNC1 Missense_Mutation p.S968L 0.33 deleterious(0) probably_damaging(0.997) TCGA-BR-8680-01 15 84442274 84442274 G T ADAMTSL3 Splice_Site p.X64_splice 0.40 TCGA-BR-8680-01 15 84527579 84527579 A G ADAMTSL3 Silent p.G263G 0.34 TCGA-BR-8680-01 15 85230953 85230953 G A SEC11A Nonsense_Mutation p.R72* 0.39 TCGA-BR-8680-01 15 85478326 85478326 C T SLC28A1 Silent p.I428I 0.38 TCGA-BR-8680-01 15 86124509 86124509 G T AKAP13 Missense_Mutation p.K1070N 0.23 deleterious_low_confidence(0) benign(0.229) TCGA-BR-8680-01 15 86697732 86697732 C A AGBL1 Missense_Mutation p.L66I 0.11 deleterious(0.05) possibly_damaging(0.708) TCGA-BR-8680-01 15 86807892 86807892 A C AGBL1 Missense_Mutation p.K451T 0.31 tolerated(0.11) benign(0.017) TCGA-BR-8680-01 15 88420315 88420315 G A NTRK3 Missense_Mutation p.R791W 0.40 deleterious(0) probably_damaging(0.987) TCGA-BR-8680-01 15 88472566 88472566 G A NTRK3 Silent p.I663I 0.40 TCGA-BR-8680-01 15 88679173 88679173 G A NTRK3 Silent p.N288N 0.42 TCGA-BR-8680-01 15 89403618 89403618 A G ACAN Silent p.G2298G 0.50 TCGA-BR-8680-01 15 89807192 89807192 T C FANCI Missense_Mutation p.F202L 0.35 tolerated(0.3) benign(0.005) TCGA-BR-8680-01 15 89849327 89849327 G A FANCI Missense_Mutation p.E1147K 0.33 deleterious(0) possibly_damaging(0.755) TCGA-BR-8680-01 15 89860719 89860719 G A POLG Silent p.V1177V 0.31 TCGA-BR-8680-01 15 90226989 90226989 C T PEX11A Silent p.T121T 0.32 TCGA-BR-8680-01 15 90227003 90227003 C A PEX11A Nonsense_Mutation p.E117* 0.33 TCGA-BR-8680-01 15 90255298 90255298 C A WDR93 Silent p.I201I 0.29 TCGA-BR-8680-01 15 90340835 90340835 C A ANPEP Missense_Mutation p.D710Y 0.27 deleterious(0) benign(0.142) TCGA-BR-8680-01 15 90770845 90770845 C T SEMA4B Missense_Mutation p.S582L 0.29 tolerated(0.35) benign(0.002) TCGA-BR-8680-01 15 90799398 90799398 C T TTLL13 Missense_Mutation p.R192C 0.32 deleterious(0.02) benign(0.019) TCGA-BR-8680-01 15 91034623 91034623 A C IQGAP1 Missense_Mutation p.D1436A 0.31 tolerated(0.14) benign(0.001) TCGA-BR-8680-01 15 92669380 92669380 C T SLCO3A1 Missense_Mutation p.R422W 0.28 deleterious(0) probably_damaging(0.956) TCGA-BR-8680-01 15 97327401 97327401 C A SPATA8 Missense_Mutation p.F36L 0.39 tolerated_low_confidence(0.9) benign(0.294) TCGA-BR-8680-01 15 99023939 99023939 C T FAM169B Missense_Mutation p.R25K 0.23 tolerated(0.1) probably_damaging(0.952) TCGA-BR-8680-01 15 99456496 99456496 C T IGF1R Missense_Mutation p.R605C 0.28 deleterious(0) probably_damaging(0.959) TCGA-BR-8680-01 15 99671359 99671359 G A SYNM Missense_Mutation p.E931K 0.50 deleterious(0) probably_damaging(0.909) TCGA-BR-8680-01 15 99696335 99696335 T C TTC23 Intron 0.35 TCGA-BR-8680-01 16 10576204 10576204 T G ATF7IP2 3'UTR 0.38 TCGA-BR-8680-01 16 10861865 10861865 T C NUBP1 Silent p.L294L 0.36 TCGA-BR-8680-01 16 10998602 10998602 G A CIITA Silent p.E313E 0.39 TCGA-BR-8680-01 16 11000864 11000864 A C CIITA Missense_Mutation p.E505D 0.34 tolerated(0.05) possibly_damaging(0.908) TCGA-BR-8680-01 16 11071150 11071150 A G CLEC16A Missense_Mutation p.D266G 0.25 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 16 1129228 1129228 C T SSTR5 Silent p.G120G 0.29 TCGA-BR-8680-01 16 1143888 1143888 G A C1QTNF8 Silent p.R124R 0.33 TCGA-BR-8680-01 16 11444642 11444642 C T RMI2 Missense_Mutation p.P147S 0.44 deleterious(0.01) probably_damaging(0.998) TCGA-BR-8680-01 16 11862354 11862354 T C ZC3H7A Missense_Mutation p.N393D 0.35 tolerated(0.61) possibly_damaging(0.501) TCGA-BR-8680-01 16 11931697 11931697 A G RSL1D1 Missense_Mutation p.S474P 0.32 tolerated(1) benign(0.004) TCGA-BR-8680-01 16 12293490 12293490 A C SNX29 Missense_Mutation p.K543T 0.24 deleterious(0) probably_damaging(0.937) TCGA-BR-8680-01 16 1270018 1270018 A G CACNA1H Missense_Mutation p.D2029G 0.23 tolerated(0.4) benign(0.424) TCGA-BR-8680-01 16 12758897 12758897 G T CPPED1 Nonsense_Mutation p.S264* 0.37 TCGA-BR-8680-01 16 12798748 12798748 A G CPPED1 Missense_Mutation p.Y150H 0.39 deleterious(0) probably_damaging(0.927) TCGA-BR-8680-01 16 14029335 14029335 C T ERCC4 Nonsense_Mutation p.R516* 0.35 TCGA-BR-8680-01 16 1412835 1412835 G T GNPTG Nonsense_Mutation p.E251* 0.37 TCGA-BR-8680-01 16 14307444 14307444 C T MKL2 Missense_Mutation p.R107C 0.33 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 16 14711452 14711452 C T PARN Missense_Mutation p.R128Q 0.33 tolerated(0.22) benign(0.055) TCGA-BR-8680-01 16 14755907 14755907 C T BFAR Silent p.I314I 0.38 TCGA-BR-8680-01 16 14983060 14983060 T G NOMO1 Missense_Mutation p.I1144M 0.35 tolerated(0.1) benign(0.129) TCGA-BR-8680-01 16 14989765 14989765 A C NOMO1 3'UTR 0.14 TCGA-BR-8680-01 16 15781232 15781232 C T NDE1 Silent p.R129R 0.40 TCGA-BR-8680-01 16 15835523 15835523 T C MYH11 Missense_Mutation p.T893A 0.29 benign(0) TCGA-BR-8680-01 16 15880505 15880505 C A MYH11 Missense_Mutation p.K205N 0.37 benign(0.332) TCGA-BR-8680-01 16 1828538 1828538 C T SPSB3 Missense_Mutation p.E68K 0.27 deleterious(0.05) possibly_damaging(0.754) TCGA-BR-8680-01 16 1836838 1836838 C T NUBP2 Silent p.C72C 0.35 TCGA-BR-8680-01 16 18597204 18597204 G T ABCC6P1 RNA 0.59 TCGA-BR-8680-01 16 18810043 18810043 A G ARL6IP1 Silent p.G50G 0.27 TCGA-BR-8680-01 16 18841653 18841653 C A SMG1 Missense_Mutation p.R2944I 0.35 tolerated(0.06) benign(0.004) TCGA-BR-8680-01 16 18856860 18856860 T C SMG1 Missense_Mutation p.E2037G 0.28 deleterious(0) probably_damaging(0.986) TCGA-BR-8680-01 16 18880520 18880520 C T SMG1 Nonsense_Mutation p.W913* 0.30 TCGA-BR-8680-01 16 19725601 19725601 G A KNOP1 Missense_Mutation p.P253S 0.36 tolerated(0.6) benign(0.173) TCGA-BR-8680-01 16 19726316 19726316 C T KNOP1 Silent p.E14E 0.24 TCGA-BR-8680-01 16 19871821 19871821 T C GPRC5B 3'UTR 0.25 TCGA-BR-8680-01 16 19883861 19883861 T C GPRC5B Missense_Mutation p.T103A 0.35 deleterious(0.04) possibly_damaging(0.827) TCGA-BR-8680-01 16 1994856 1994856 C A RPL3L Missense_Mutation p.E402D 0.33 tolerated_low_confidence(0.05) benign(0.022) TCGA-BR-8680-01 16 20380850 20380850 C A PDILT Missense_Mutation p.K360N 0.33 deleterious(0) possibly_damaging(0.87) TCGA-BR-8680-01 16 20384348 20384348 C T PDILT Missense_Mutation p.E260K 0.36 deleterious(0.02) probably_damaging(0.945) TCGA-BR-8680-01 16 20476902 20476902 T C ACSM2A Missense_Mutation p.W81R 0.31 tolerated(0.05) probably_damaging(1) TCGA-BR-8680-01 16 20559486 20559486 C A ACSM2B Missense_Mutation p.Q332H 0.31 tolerated(0.09) benign(0.003) TCGA-BR-8680-01 16 20696520 20696520 C T ACSM1 Missense_Mutation p.R133Q 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-BR-8680-01 16 20696700 20696700 G A ACSM1 Missense_Mutation p.A73V 0.32 deleterious(0.01) probably_damaging(0.997) TCGA-BR-8680-01 16 20781488 20781488 A C ACSM3 Missense_Mutation p.E44D 0.27 tolerated(0.2) benign(0.009) TCGA-BR-8680-01 16 20851123 20851123 T G AC004381.6 Missense_Mutation p.I477S 0.30 deleterious(0) possibly_damaging(0.824) TCGA-BR-8680-01 16 20851723 20851723 C T AC004381.6 Missense_Mutation p.A520V 0.35 tolerated(0.15) benign(0.033) TCGA-BR-8680-01 16 20974776 20974776 C T DNAH3 Missense_Mutation p.R3477Q 0.35 deleterious(0) probably_damaging(0.997) TCGA-BR-8680-01 16 20975792 20975792 G A DNAH3 Silent p.I3138I 0.32 TCGA-BR-8680-01 16 20976341 20976341 T G DNAH3 Missense_Mutation p.E2955D 0.34 tolerated(1) benign(0.001) TCGA-BR-8680-01 16 20976706 20976706 G T DNAH3 Missense_Mutation p.L2834I 0.32 deleterious(0.03) probably_damaging(0.975) TCGA-BR-8680-01 16 20996988 20996988 C T DNAH3 Missense_Mutation p.R2359Q 0.31 deleterious(0.01) benign(0.223) TCGA-BR-8680-01 16 20999312 20999312 G A DNAH3 Missense_Mutation p.S2226L 0.32 deleterious(0.04) possibly_damaging(0.612) TCGA-BR-8680-01 16 21136675 21136675 C T DNAH3 Missense_Mutation p.A409T 0.32 tolerated(0.27) benign(0.052) TCGA-BR-8680-01 16 21210159 21210159 T C ZP2 Missense_Mutation p.K651R 0.31 tolerated(0.2) benign(0.005) TCGA-BR-8680-01 16 21213314 21213314 C T ZP2 Missense_Mutation p.E440K 0.31 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 16 2159869 2159869 T C PKD1 Missense_Mutation p.T1767A 0.29 benign(0.013) TCGA-BR-8680-01 16 21698929 21698929 C T OTOA Missense_Mutation p.R199W 0.25 tolerated(0.09) benign(0.002) TCGA-BR-8680-01 16 21994445 21994445 G A UQCRC2 Missense_Mutation p.A439T 0.15 deleterious(0.05) benign(0.058) TCGA-BR-8680-01 16 22142928 22142928 C T VWA3A Missense_Mutation p.R584W 0.32 tolerated(0.12) benign(0.022) TCGA-BR-8680-01 16 22149750 22149750 G T VWA3A Nonsense_Mutation p.E737* 0.37 TCGA-BR-8680-01 16 22151506 22151506 G A VWA3A Missense_Mutation p.S775N 0.44 tolerated(0.47) benign(0.009) TCGA-BR-8680-01 16 22361162 22361162 C T CDR2 Silent p.T67T 0.35 TCGA-BR-8680-01 16 2239124 2239124 G A CASKIN1 Missense_Mutation p.A174V 0.45 possibly_damaging(0.869) TCGA-BR-8680-01 16 2260149 2260149 G A BRICD5 Missense_Mutation p.A105V 0.37 tolerated(1) benign(0.012) TCGA-BR-8680-01 16 22926592 22926592 C T HS3ST2 Silent p.F271F 0.32 TCGA-BR-8680-01 16 23080168 23080168 C T USP31 Silent p.R1086R 0.31 TCGA-BR-8680-01 16 23091492 23091492 C A USP31 Nonsense_Mutation p.E651* 0.33 TCGA-BR-8680-01 16 23391835 23391835 G A SCNN1B Missense_Mutation p.D546N 0.37 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 16 2349486 2349486 G A ABCA3 Silent p.N553N 0.31 TCGA-BR-8680-01 16 23569435 23569435 G A UBFD1 Missense_Mutation p.D64N 0.31 tolerated(0.11) benign(0) TCGA-BR-8680-01 16 23690463 23690463 C T PLK1 Silent p.I70I 0.27 TCGA-BR-8680-01 16 2369629 2369629 G A ABCA3 Missense_Mutation p.L276F 0.26 tolerated(0.09) possibly_damaging(0.617) TCGA-BR-8680-01 16 24552030 24552030 A C RBBP6 Missense_Mutation p.D28A 0.32 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BR-8680-01 16 24578677 24578677 T C RBBP6 Silent p.P601P 0.36 TCGA-BR-8680-01 16 24802647 24802647 C A TNRC6A Missense_Mutation p.S895Y 0.35 deleterious(0) possibly_damaging(0.906) TCGA-BR-8680-01 16 24803039 24803039 G A TNRC6A Missense_Mutation p.V1026I 0.38 tolerated(0.11) benign(0.001) TCGA-BR-8680-01 16 2481197 2481197 G A CCNF Missense_Mutation p.R28Q 0.24 tolerated(0.06) benign(0.009) TCGA-BR-8680-01 16 2503465 2503465 G A CCNF Missense_Mutation p.D548N 0.35 deleterious(0.02) benign(0.065) TCGA-BR-8680-01 16 2627488 2627488 T G PDPK1 Missense_Mutation p.S258A 0.33 tolerated(0.53) benign(0.006) TCGA-BR-8680-01 16 27460524 27460524 G A IL21R Missense_Mutation p.E513K 0.27 deleterious(0.01) possibly_damaging(0.555) TCGA-BR-8680-01 16 27772749 27772749 T C KIAA0556 Missense_Mutation p.F1216S 0.28 deleterious(0) probably_damaging(0.972) TCGA-BR-8680-01 16 27818854 27818854 G A GSG1L Silent p.S284S 0.37 TCGA-BR-8680-01 16 2812791 2812791 T G SRRM2 Missense_Mutation p.I754M 0.32 unknown(0) TCGA-BR-8680-01 16 2817372 2817372 T C SRRM2 Silent p.A2281A 0.40 TCGA-BR-8680-01 16 2821958 2821958 T G TCEB2 Intron 0.25 TCGA-BR-8680-01 16 28946860 28946860 C A CD19 Missense_Mutation p.L311I 0.25 deleterious(0.01) possibly_damaging(0.801) TCGA-BR-8680-01 16 28947495 28947495 G T CD19 Missense_Mutation p.R323I 0.35 deleterious(0) probably_damaging(0.975) TCGA-BR-8680-01 16 29367234 29367234 G A SNX29P2 RNA 0.24 TCGA-BR-8680-01 16 2946395 2946395 G T FLYWCH2 5'UTR 0.40 TCGA-BR-8680-01 16 29755699 29755699 G A C16orf54 Missense_Mutation p.P192S 0.38 deleterious_low_confidence(0.03) benign(0.012) TCGA-BR-8680-01 16 29825012 29825012 G - PRRT2 Frame_Shift_Del p.A214Pfs*15 0.29 TCGA-BR-8680-01 16 29994826 29994826 C T TAOK2 Silent p.G421G 0.37 TCGA-BR-8680-01 16 30036898 30036898 T G FAM57B Intron 0.32 TCGA-BR-8680-01 16 30435545 30435545 G A DCTPP1 3'UTR 0.47 TCGA-BR-8680-01 16 30522424 30522424 C A ITGAL Missense_Mutation p.P918H 0.27 deleterious(0.01) probably_damaging(0.996) TCGA-BR-8680-01 16 3065372 3065372 C A CLDN6 Missense_Mutation p.K217N 0.38 deleterious(0) probably_damaging(0.995) TCGA-BR-8680-01 16 30731499 30731499 G A SRCAP Missense_Mutation p.R945Q 0.30 unknown(0) TCGA-BR-8680-01 16 31094498 31094498 C T ZNF646 3'UTR 0.36 TCGA-BR-8680-01 16 31095081 31095081 C A PRSS53 3'UTR 0.41 TCGA-BR-8680-01 16 31212849 31212849 T C PYCARD 3'UTR 0.33 TCGA-BR-8680-01 16 31277142 31277142 G A ITGAM Silent p.E83E 0.46 TCGA-BR-8680-01 16 31282341 31282341 A C ITGAM Missense_Mutation p.D165A 0.36 deleterious(0) possibly_damaging(0.725) TCGA-BR-8680-01 16 31382767 31382767 T C ITGAX Missense_Mutation p.S652P 0.36 deleterious(0) benign(0.279) TCGA-BR-8680-01 16 31391336 31391336 G A ITGAX Missense_Mutation p.A1004T 0.38 tolerated(0.78) benign(0.003) TCGA-BR-8680-01 16 31504366 31504366 G T C16orf58 Silent p.V340V 0.30 TCGA-BR-8680-01 16 31539893 31539893 G T AHSP Missense_Mutation p.D64Y 0.26 deleterious(0) probably_damaging(0.993) TCGA-BR-8680-01 16 31539894 31539894 A G AHSP Missense_Mutation p.D64G 0.42 deleterious(0.01) probably_damaging(0.974) TCGA-BR-8680-01 16 3187204 3187204 G A ZNF213 5'UTR 0.28 TCGA-BR-8680-01 16 31927273 31927273 G A ZNF267 Missense_Mutation p.R568Q 0.34 tolerated(0.12) probably_damaging(0.97) TCGA-BR-8680-01 16 3340119 3340119 G T ZNF263 Missense_Mutation p.R538I 0.32 deleterious(0) benign(0.326) TCGA-BR-8680-01 16 3349373 3349373 G A TIGD7 Silent p.G414G 0.35 TCGA-BR-8680-01 16 3349597 3349597 G A TIGD7 Missense_Mutation p.R340W 0.30 deleterious(0) possibly_damaging(0.896) TCGA-BR-8680-01 16 33965525 33965525 C T RNA5-8SP2 RNA 0.23 TCGA-BR-8680-01 16 3486471 3486471 A G ZNF597 Silent p.L410L 0.31 TCGA-BR-8680-01 16 3644567 3644567 C T SLX4 Missense_Mutation p.A683T 0.24 tolerated(0.14) benign(0.196) TCGA-BR-8680-01 16 3659052 3659052 A G SLX4 5'UTR 0.20 TCGA-BR-8680-01 16 3713498 3713498 C T TRAP1 Silent p.K545K 0.36 TCGA-BR-8680-01 16 3807913 3807913 C T CREBBP Missense_Mutation p.R1169H 0.42 unknown(0) TCGA-BR-8680-01 16 3900321 3900321 C T CREBBP Missense_Mutation p.A259T 0.31 possibly_damaging(0.782) TCGA-BR-8680-01 16 4015871 4015871 G T ADCY9 Silent p.R1323R 0.32 TCGA-BR-8680-01 16 4016451 4016451 G A ADCY9 Silent p.S1129S 0.36 TCGA-BR-8680-01 16 4383520 4383520 G A GLIS2 Silent p.S115S 0.45 TCGA-BR-8680-01 16 4390266 4390266 T G CORO7-PAM16 3'UTR 0.40 TCGA-BR-8680-01 16 46633805 46633805 C T SHCBP1 Missense_Mutation p.G428D 0.41 deleterious(0) possibly_damaging(0.669) TCGA-BR-8680-01 16 46766221 46766221 C T MYLK3 Missense_Mutation p.G454E 0.29 tolerated(0.13) possibly_damaging(0.642) TCGA-BR-8680-01 16 47162324 47162324 T C NETO2 Silent p.R131R 0.34 TCGA-BR-8680-01 16 47163219 47163219 G A NETO2 Nonsense_Mutation p.R50* 0.32 TCGA-BR-8680-01 16 47723014 47723014 A T PHKB Missense_Mutation p.D898V 0.26 deleterious(0.02) possibly_damaging(0.642) TCGA-BR-8680-01 16 48122497 48122497 T G ABCC12 Missense_Mutation p.Q1145P 0.33 deleterious(0.02) benign(0.006) TCGA-BR-8680-01 16 48167666 48167666 A G ABCC12 Missense_Mutation p.S354P 0.31 tolerated(1) benign(0.004) TCGA-BR-8680-01 16 48226615 48226615 C T ABCC11 Missense_Mutation p.R841Q 0.36 tolerated(0.89) benign(0.007) TCGA-BR-8680-01 16 48249223 48249223 C T ABCC11 Silent p.Q328Q 0.35 TCGA-BR-8680-01 16 48265757 48265757 C A ABCC11 Missense_Mutation p.D26Y 0.36 deleterious_low_confidence(0.02) benign(0.384) TCGA-BR-8680-01 16 48381506 48381506 G A LONP2 Missense_Mutation p.R676Q 0.36 tolerated(0.33) benign(0.017) TCGA-BR-8680-01 16 49671572 49671572 C T ZNF423 Silent p.E497E 0.31 TCGA-BR-8680-01 16 49671995 49671995 A C ZNF423 Missense_Mutation p.S356R 0.26 tolerated(0.15) probably_damaging(0.986) TCGA-BR-8680-01 16 49764857 49764857 G A ZNF423 Silent p.C34C 0.42 TCGA-BR-8680-01 16 50104153 50104153 C T HEATR3 Missense_Mutation p.S155F 0.32 tolerated(0.53) benign(0.142) TCGA-BR-8680-01 16 50112911 50112911 C T HEATR3 Silent p.F341F 0.33 TCGA-BR-8680-01 16 50384079 50384079 C A BRD7 Splice_Site p.X149_splice 0.40 TCGA-BR-8680-01 16 50709814 50709814 C T SNX20 Missense_Mutation p.S50N 0.31 tolerated(0.09) benign(0.025) TCGA-BR-8680-01 16 50759457 50759457 G T NOD2 Missense_Mutation p.K980N 0.18 deleterious(0) benign(0.347) TCGA-BR-8680-01 16 50784016 50784016 G T CYLD Missense_Mutation p.R136I 0.33 deleterious(0.05) possibly_damaging(0.782) TCGA-BR-8680-01 16 5081783 5081783 C A NAGPA Missense_Mutation p.E215D 0.11 benign(0.182) TCGA-BR-8680-01 16 5105290 5105290 A C C16orf89 Missense_Mutation p.I275M 0.41 deleterious(0) probably_damaging(0.974) TCGA-BR-8680-01 16 51173150 51173150 G A SALL1 Missense_Mutation p.R995W 0.28 deleterious(0) probably_damaging(0.99) TCGA-BR-8680-01 16 51175943 51175943 T C SALL1 Missense_Mutation p.N64D 0.16 tolerated(0.05) benign(0.242) TCGA-BR-8680-01 16 53190731 53190731 T C CHD9 Missense_Mutation p.C244R 0.28 possibly_damaging(0.854) TCGA-BR-8680-01 16 53302013 53302013 G A CHD9 Silent p.Q1564Q 0.32 TCGA-BR-8680-01 16 53504328 53504328 T G RBL2 Missense_Mutation p.F760C 0.25 deleterious(0.03) possibly_damaging(0.76) TCGA-BR-8680-01 16 53529195 53529195 G A AKTIP Missense_Mutation p.P98S 0.31 deleterious(0) probably_damaging(0.975) TCGA-BR-8680-01 16 53686692 53686692 G A RPGRIP1L Missense_Mutation p.A636V 0.31 deleterious(0) probably_damaging(0.91) TCGA-BR-8680-01 16 55363164 55363164 C T IRX6 Missense_Mutation p.A425V 0.34 tolerated(0.08) benign(0.015) TCGA-BR-8680-01 16 55562474 55562474 G A LPCAT2 Missense_Mutation p.R166Q 0.32 deleterious(0.01) benign(0.014) TCGA-BR-8680-01 16 55731866 55731866 C T SLC6A2 Nonsense_Mutation p.R440* 0.26 TCGA-BR-8680-01 16 55844493 55844493 G T CES1 Missense_Mutation p.F418L 0.15 tolerated(0.22) benign(0.045) TCGA-BR-8680-01 16 55855305 55855305 G A CES1 Missense_Mutation p.A223V 0.16 deleterious(0) possibly_damaging(0.597) TCGA-BR-8680-01 16 55886932 55886932 C T CES5A Silent p.P407P 0.29 TCGA-BR-8680-01 16 55903558 55903558 G A CES5A Silent p.V201V 0.28 TCGA-BR-8680-01 16 56534811 56534811 A G BBS2 Missense_Mutation p.V451A 0.32 tolerated(0.09) benign(0.168) TCGA-BR-8680-01 16 56700816 56700816 G A MT1G Missense_Mutation p.S54L 0.39 tolerated(0.16) unknown(0) TCGA-BR-8680-01 16 570496 570496 A G RAB11FIP3 Missense_Mutation p.N685S 0.33 deleterious(0.05) possibly_damaging(0.873) TCGA-BR-8680-01 16 57608945 57608945 C A GPR114 Missense_Mutation p.S476Y 0.42 deleterious(0.04) possibly_damaging(0.893) TCGA-BR-8680-01 16 57684226 57684226 G A GPR56 Silent p.T9T 0.30 TCGA-BR-8680-01 16 57735979 57735979 G A CCDC135 Silent p.S212S 0.39 TCGA-BR-8680-01 16 57741461 57741461 G T CCDC135 Missense_Mutation p.E316D 0.25 deleterious(0.02) probably_damaging(0.999) TCGA-BR-8680-01 16 57762317 57762317 G A CCDC135 Missense_Mutation p.E738K 0.42 deleterious(0.01) probably_damaging(0.973) TCGA-BR-8680-01 16 57764845 57764845 G T CCDC135 Missense_Mutation p.E798D 0.14 deleterious(0.01) probably_damaging(0.986) TCGA-BR-8680-01 16 57789257 57789257 G A KATNB1 Missense_Mutation p.A473T 0.26 tolerated(0.47) benign(0.077) TCGA-BR-8680-01 16 58150852 58150852 G A C16orf80 Missense_Mutation p.R30W 0.23 deleterious(0) possibly_damaging(0.773) TCGA-BR-8680-01 16 58220746 58220746 C A CSNK2A2 Missense_Mutation p.K77N 0.32 deleterious(0) probably_damaging(0.93) TCGA-BR-8680-01 16 58320087 58320087 G A PRSS54 Silent p.V92V 0.31 TCGA-BR-8680-01 16 58538160 58538160 C T NDRG4 Missense_Mutation p.A129V 0.36 deleterious(0.01) probably_damaging(0.974) TCGA-BR-8680-01 16 58581097 58581097 C T CNOT1 Missense_Mutation p.R1248H 0.34 deleterious(0.02) benign(0.321) TCGA-BR-8680-01 16 58610407 58610407 G T CNOT1 Missense_Mutation p.A555D 0.30 deleterious(0.04) benign(0.205) TCGA-BR-8680-01 16 61687875 61687875 A C CDH8 Silent p.A679A 0.32 TCGA-BR-8680-01 16 61747770 61747770 C T CDH8 Silent p.P543P 0.29 TCGA-BR-8680-01 16 61760859 61760859 C A CDH8 Intron 0.29 TCGA-BR-8680-01 16 61935262 61935262 C A CDH8 Missense_Mutation p.R123I 0.44 deleterious(0) possibly_damaging(0.645) TCGA-BR-8680-01 16 65319224 65319224 A G LINC00922 RNA 0.20 TCGA-BR-8680-01 16 66613029 66613029 T G CMTM1 3'UTR 0.30 TCGA-BR-8680-01 16 66764102 66764102 C A DYNC1LI2 Missense_Mutation p.K318N 0.20 tolerated(0.1) probably_damaging(0.993) TCGA-BR-8680-01 16 66842448 66842448 G T NAE1 Missense_Mutation p.H436N 0.31 tolerated(0.1) benign(0.063) TCGA-BR-8680-01 16 66844292 66844292 C A NAE1 Nonsense_Mutation p.E379* 0.36 TCGA-BR-8680-01 16 66918406 66918406 T G PDP2 Missense_Mutation p.F73L 0.32 tolerated(0.32) benign(0.001) TCGA-BR-8680-01 16 66943282 66943282 G A CDH16 Silent p.I760I 0.21 TCGA-BR-8680-01 16 66946441 66946441 A G CDH16 Missense_Mutation p.I442T 0.30 tolerated(0.17) benign(0.023) TCGA-BR-8680-01 16 66949216 66949216 G A CDH16 Nonsense_Mutation p.R164* 0.27 TCGA-BR-8680-01 16 66998542 66998542 C T CES3 Missense_Mutation p.A244V 0.34 deleterious(0) possibly_damaging(0.543) TCGA-BR-8680-01 16 67183690 67183690 G A B3GNT9 Silent p.F233F 0.40 TCGA-BR-8680-01 16 67298957 67298957 G A SLC9A5 Silent p.A676A 0.33 TCGA-BR-8680-01 16 67645910 67645910 A C CTCF Missense_Mutation p.N280H 0.10 tolerated(0.1) probably_damaging(0.968) TCGA-BR-8680-01 16 67681466 67681466 C T RLTPR Missense_Mutation p.R278W 0.33 deleterious(0) possibly_damaging(0.889) TCGA-BR-8680-01 16 67876716 67876716 G T THAP11 Nonsense_Mutation p.E87* 0.38 TCGA-BR-8680-01 16 68107995 68107995 G A DUS2 Missense_Mutation p.R290Q 0.35 tolerated(0.07) benign(0.273) TCGA-BR-8680-01 16 68156942 68156942 G T NFATC3 Missense_Mutation p.D386Y 0.29 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 16 68381545 68381545 C T PRMT7 Silent p.V429V 0.39 TCGA-BR-8680-01 16 68387404 68387404 C T PRMT7 Missense_Mutation p.R529W 0.26 deleterious(0) possibly_damaging(0.677) TCGA-BR-8680-01 16 68404923 68404923 C T SMPD3 Missense_Mutation p.D388N 0.25 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 16 68597611 68597611 G T ZFP90 Missense_Mutation p.E307D 0.37 deleterious(0.01) probably_damaging(0.989) TCGA-BR-8680-01 16 68712487 68712487 C T CDH3 Silent p.F158F 0.34 TCGA-BR-8680-01 16 68867516 68867516 A G CDH1 3'UTR 0.23 TCGA-BR-8680-01 16 69744782 69744782 G T NQO1 3'UTR 0.15 TCGA-BR-8680-01 16 70177526 70177526 A C PDPR Missense_Mutation p.E573D 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8680-01 16 70349759 70349759 A C DDX19B Intron 0.29 TCGA-BR-8680-01 16 70572358 70572358 G T SF3B3 Missense_Mutation p.D320Y 0.37 deleterious(0) probably_damaging(0.976) TCGA-BR-8680-01 16 70688478 70688478 G A IL34 Silent p.E22E 0.32 TCGA-BR-8680-01 16 70993581 70993581 G A HYDIN Silent p.I2037I 0.29 TCGA-BR-8680-01 16 71025987 71025987 T C HYDIN Silent p.L1257L 0.31 TCGA-BR-8680-01 16 71209538 71209538 C T HYDIN Missense_Mutation p.R163Q 0.35 possibly_damaging(0.894) TCGA-BR-8680-01 16 71212926 71212926 C T HYDIN Missense_Mutation p.A96T 0.27 probably_damaging(0.981) TCGA-BR-8680-01 16 71318614 71318614 A C CMTR2 Missense_Mutation p.F404V 0.36 deleterious(0) possibly_damaging(0.691) TCGA-BR-8680-01 16 71408706 71408706 A C CALB2 Missense_Mutation p.K77T 0.38 tolerated(0.22) benign(0.136) TCGA-BR-8680-01 16 71423745 71423745 C T CALB2 Missense_Mutation p.L265F 0.32 deleterious(0) benign(0.09) TCGA-BR-8680-01 16 71606212 71606212 C T TAT Missense_Mutation p.E195K 0.32 tolerated(0.06) possibly_damaging(0.594) TCGA-BR-8680-01 16 71766837 71766837 T G AP1G1 3'UTR 0.40 TCGA-BR-8680-01 16 71805084 71805084 T G AP1G1 Missense_Mutation p.K180N 0.43 deleterious(0.04) benign(0.093) TCGA-BR-8680-01 16 72045994 72045994 C A DHODH Missense_Mutation p.L23I 0.27 tolerated(0.23) benign(0.011) TCGA-BR-8680-01 16 72093038 72093038 G A HP Silent p.K131K 0.35 TCGA-BR-8680-01 16 72829629 72829629 C T ZFHX3 Missense_Mutation p.D2318N 0.41 probably_damaging(0.98) TCGA-BR-8680-01 16 74372718 74372718 C T RP11-252A24.2 RNA 0.44 TCGA-BR-8680-01 16 74419325 74419325 G A NPIPB15 Missense_Mutation p.R112H 0.17 deleterious_low_confidence(0.01) benign(0.273) TCGA-BR-8680-01 16 75611253 75611253 A C GABARAPL2 Missense_Mutation p.T114P 0.29 deleterious(0) possibly_damaging(0.694) TCGA-BR-8680-01 16 76350318 76350318 G A CNTNAP4 Missense_Mutation p.D7N 0.18 tolerated(0.18) benign(0.109) TCGA-BR-8680-01 16 76461353 76461353 T G CNTNAP4 Missense_Mutation p.F107C 0.28 deleterious(0) probably_damaging(0.987) TCGA-BR-8680-01 16 77334283 77334283 T C ADAMTS18 Missense_Mutation p.N851D 0.35 deleterious(0) possibly_damaging(0.764) TCGA-BR-8680-01 16 77396073 77396073 C A ADAMTS18 Missense_Mutation p.R382I 0.31 deleterious(0) probably_damaging(0.994) TCGA-BR-8680-01 16 7759064 7759064 A G RBFOX1 Silent p.G355G 0.28 TCGA-BR-8680-01 16 780269 780269 C T NARFL 3'UTR 0.50 TCGA-BR-8680-01 16 78064634 78064634 C T CLEC3A Nonsense_Mutation p.R173* 0.33 TCGA-BR-8680-01 16 80718445 80718445 C A CDYL2 Missense_Mutation p.E202D 0.33 tolerated(0.54) benign(0.026) TCGA-BR-8680-01 16 81053750 81053750 C T CENPN Nonsense_Mutation p.R134* 0.25 TCGA-BR-8680-01 16 81077066 81077066 C T ATMIN Silent p.A321A 0.40 TCGA-BR-8680-01 16 81097524 81097524 T G C16orf46 Missense_Mutation p.N13H 0.29 deleterious(0.01) possibly_damaging(0.555) TCGA-BR-8680-01 16 81213297 81213297 C T PKD1L2 Missense_Mutation p.S53N 0.38 deleterious(0) possibly_damaging(0.685) TCGA-BR-8680-01 16 81685954 81685954 G A CMIP Silent p.S208S 0.07 TCGA-BR-8680-01 16 81934292 81934292 A C PLCG2 Missense_Mutation p.E423D 0.38 tolerated(0.55) benign(0.036) TCGA-BR-8680-01 16 81944184 81944184 A C PLCG2 Missense_Mutation p.K598T 0.16 deleterious(0.03) possibly_damaging(0.843) TCGA-BR-8680-01 16 823249 823249 G A MSLNL Silent p.Y673Y 0.24 TCGA-BR-8680-01 16 832053 832053 G A MSLNL Missense_Mutation p.P24S 0.27 probably_damaging(0.932) TCGA-BR-8680-01 16 84031879 84031879 C T NECAB2 Missense_Mutation p.R307C 0.32 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 16 84164808 84164808 A G HSDL1 Missense_Mutation p.V40A 0.26 deleterious(0.01) benign(0.066) TCGA-BR-8680-01 16 84792352 84792352 A C USP10 Missense_Mutation p.K408T 0.35 deleterious(0.05) probably_damaging(0.971) TCGA-BR-8680-01 16 84879404 84879404 G A CRISPLD2 Missense_Mutation p.E85K 0.36 deleterious(0.03) possibly_damaging(0.842) TCGA-BR-8680-01 16 87636725 87636725 T C JPH3 5'UTR 0.41 TCGA-BR-8680-01 16 87723916 87723916 C T JPH3 Silent p.F650F 0.44 TCGA-BR-8680-01 16 87902728 87902728 G A SLC7A5 Missense_Mutation p.L101F 0.47 deleterious(0.01) probably_damaging(1) TCGA-BR-8680-01 16 88958361 88958361 C T CBFA2T3 Missense_Mutation p.E214K 0.19 deleterious(0) possibly_damaging(0.521) TCGA-BR-8680-01 16 88958681 88958681 G A CBFA2T3 Missense_Mutation p.R198C 0.27 deleterious(0) probably_damaging(0.985) TCGA-BR-8680-01 16 89250017 89250017 T G CDH15 Missense_Mutation p.I140S 0.39 deleterious(0) probably_damaging(0.993) TCGA-BR-8680-01 16 89348754 89348754 G A ANKRD11 Missense_Mutation p.A1399V 0.34 benign(0.178) TCGA-BR-8680-01 16 89776282 89776282 C T VPS9D1 Missense_Mutation p.E431K 0.35 tolerated(0.08) possibly_damaging(0.736) TCGA-BR-8680-01 16 8988445 8988445 T G USP7 Missense_Mutation p.E1055A 0.41 tolerated(0.43) benign(0.015) TCGA-BR-8680-01 16 9000408 9000408 C A USP7 Nonsense_Mutation p.E435* 0.30 TCGA-BR-8680-01 16 90016033 90016033 A G DEF8 Missense_Mutation p.T54A 0.33 tolerated_low_confidence(0.84) benign(0) TCGA-BR-8680-01 16 9916169 9916169 T G GRIN2A Missense_Mutation p.K707T 0.38 deleterious(0) probably_damaging(0.993) TCGA-BR-8680-01 17 10210275 10210275 G A MYH13 Missense_Mutation p.A1759V 0.35 deleterious(0.04) benign(0.012) TCGA-BR-8680-01 17 10227375 10227375 C T MYH13 Silent p.T966T 0.38 TCGA-BR-8680-01 17 10297697 10297697 G A MYH8 Missense_Mutation p.R1679C 0.27 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 17 10312471 10312471 C T MYH8 Silent p.A636A 0.22 TCGA-BR-8680-01 17 10357945 10357945 T G MYH4 Missense_Mutation p.K873T 0.32 deleterious(0.03) benign(0.21) TCGA-BR-8680-01 17 10402034 10402034 C T MYH1 Missense_Mutation p.A1364T 0.41 tolerated(0.06) benign(0.004) TCGA-BR-8680-01 17 10405120 10405120 C A MYH1 Nonsense_Mutation p.E1074* 0.34 TCGA-BR-8680-01 17 10428901 10428901 T G MYH2 Missense_Mutation p.E1468D 0.36 deleterious(0.04) probably_damaging(0.96) TCGA-BR-8680-01 17 10429120 10429120 C T MYH2 Missense_Mutation p.E1421K 0.32 deleterious(0) probably_damaging(0.937) TCGA-BR-8680-01 17 10447032 10447032 C T MYH2 Missense_Mutation p.R246H 0.30 deleterious(0) probably_damaging(0.984) TCGA-BR-8680-01 17 10447416 10447416 C T MYH2 Splice_Site p.X178_splice 0.28 TCGA-BR-8680-01 17 10541674 10541674 C T MYH3 Missense_Mutation p.D1139N 0.28 deleterious(0.03) benign(0.259) TCGA-BR-8680-01 17 10549159 10549159 C T MYH3 Missense_Mutation p.A336T 0.24 deleterious(0.01) probably_damaging(0.996) TCGA-BR-8680-01 17 10550506 10550506 C T MYH3 Silent p.E297E 0.32 TCGA-BR-8680-01 17 11622691 11622691 A G DNAH9 Missense_Mutation p.S1865G 0.37 benign(0.008) TCGA-BR-8680-01 17 11660968 11660968 C T DNAH9 Silent p.F2318F 0.21 TCGA-BR-8680-01 17 11806042 11806042 T G DNAH9 Missense_Mutation p.S3805A 0.41 benign(0.05) TCGA-BR-8680-01 17 11837235 11837235 C T DNAH9 Silent p.I4112I 0.32 TCGA-BR-8680-01 17 11840674 11840674 C T DNAH9 Silent p.I4165I 0.33 TCGA-BR-8680-01 17 11881837 11881837 C A ZNF18 Nonsense_Mutation p.E363* 0.35 TCGA-BR-8680-01 17 15522795 15522795 G A CDRT1 Missense_Mutation p.A11V 0.22 deleterious(0.03) benign(0.091) TCGA-BR-8680-01 17 15620159 15620159 G T ZNF286A Missense_Mutation p.R374I 0.28 tolerated(0.07) probably_damaging(0.999) TCGA-BR-8680-01 17 15620583 15620583 T G ZNF286A Silent p.V515V 0.42 TCGA-BR-8680-01 17 15928385 15928385 C T TTC19 Missense_Mutation p.A244V 0.36 deleterious(0) probably_damaging(0.988) TCGA-BR-8680-01 17 15971356 15971356 C T NCOR1 Silent p.A1531A 0.41 TCGA-BR-8680-01 17 16041478 16041478 C T NCOR1 Silent p.E467E 0.21 TCGA-BR-8680-01 17 16327012 16327012 G A TRPV2 Silent p.Q285Q 0.36 TCGA-BR-8680-01 17 16455532 16455532 G T ZNF287 Missense_Mutation p.H642N 0.32 deleterious(0.04) probably_damaging(0.988) TCGA-BR-8680-01 17 16467135 16467135 G A ZNF287 Missense_Mutation p.S169L 0.33 tolerated(0.13) benign(0.007) TCGA-BR-8680-01 17 16525654 16525654 G A ZNF624 Missense_Mutation p.S849L 0.33 deleterious(0.01) benign(0.225) TCGA-BR-8680-01 17 17398896 17398896 T C RASD1 Missense_Mutation p.N130S 0.32 tolerated(0.26) benign(0.326) TCGA-BR-8680-01 17 18003967 18003967 G A DRG2 Missense_Mutation p.E209K 0.35 deleterious(0) possibly_damaging(0.711) TCGA-BR-8680-01 17 18027810 18027810 G A MYO15A Missense_Mutation p.R1208H 0.24 unknown(0) TCGA-BR-8680-01 17 18036584 18036584 C T MYO15A Missense_Mutation p.R1456C 0.30 unknown(0) TCGA-BR-8680-01 17 18416730 18416730 G T CTD-2303H24.2 RNA 0.35 TCGA-BR-8680-01 17 18565271 18565271 A C ZNF286B Silent p.V516V 0.11 TCGA-BR-8680-01 17 18653227 18653227 A G FBXW10 Missense_Mutation p.Y288C 0.18 deleterious(0) probably_damaging(0.95) TCGA-BR-8680-01 17 18653257 18653257 G A FBXW10 Intron 0.24 TCGA-BR-8680-01 17 18668094 18668094 C T FBXW10 Silent p.F491F 0.22 TCGA-BR-8680-01 17 18785924 18785924 T C PRPSAP2 Silent p.I152I 0.33 TCGA-BR-8680-01 17 18862465 18862465 C T SLC5A10 Silent p.F67F 0.29 TCGA-BR-8680-01 17 19186779 19186779 G A EPN2 Missense_Mutation p.G116D 0.38 deleterious(0) probably_damaging(0.994) TCGA-BR-8680-01 17 19316718 19316718 G A RNF112 Silent p.G238G 0.39 TCGA-BR-8680-01 17 19451350 19451350 C T SLC47A1 Missense_Mutation p.A120V 0.35 tolerated(0.62) benign(0.002) TCGA-BR-8680-01 17 1960258 1960258 G A HIC1 Missense_Mutation p.E111K 0.23 tolerated(0.17) benign(0.043) TCGA-BR-8680-01 17 19641726 19641726 G A ALDH3A1 Silent p.F419F 0.33 TCGA-BR-8680-01 17 19839708 19839708 A C AKAP10 Missense_Mutation p.F453C 0.38 deleterious(0) probably_damaging(0.995) TCGA-BR-8680-01 17 20224924 20224924 G A AC004702.2 Intron 0.34 TCGA-BR-8680-01 17 20354903 20354903 C T LGALS9B Missense_Mutation p.R271H 0.27 deleterious(0.02) probably_damaging(0.935) TCGA-BR-8680-01 17 21094443 21094443 G T DHRS7B Nonsense_Mutation p.E319* 0.24 TCGA-BR-8680-01 17 21101654 21101654 C T TMEM11 Missense_Mutation p.E188K 0.31 tolerated(0.09) benign(0.044) TCGA-BR-8680-01 17 21319340 21319340 G A KCNJ12 Missense_Mutation p.R229H 0.08 deleterious(0) probably_damaging(0.978) TCGA-BR-8680-01 17 2201202 2201202 C T SMG6 Silent p.E665E 0.33 TCGA-BR-8680-01 17 2239404 2239404 T G TSR1 Missense_Mutation p.K43T 0.11 deleterious(0.01) possibly_damaging(0.48) TCGA-BR-8680-01 17 2570370 2570370 G T PAFAH1B1 Nonsense_Mutation p.E93* 0.35 TCGA-BR-8680-01 17 25877595 25877595 C T KSR1 Intron 0.34 TCGA-BR-8680-01 17 26676190 26676190 T G POLDIP2 Splice_Site p.X304_splice 0.34 TCGA-BR-8680-01 17 26715444 26715444 C T SARM1 Silent p.F569F 0.43 TCGA-BR-8680-01 17 26731978 26731978 C T SLC46A1 Missense_Mutation p.R246H 0.32 tolerated(0.08) benign(0.006) TCGA-BR-8680-01 17 27041904 27041904 C A RAB34 Nonsense_Mutation p.E264* 0.29 TCGA-BR-8680-01 17 27239795 27239795 G A PHF12 Silent p.V598V 0.27 TCGA-BR-8680-01 17 27493497 27493497 C T MYO18A Silent p.S154S 0.28 TCGA-BR-8680-01 17 27581350 27581350 C T CRYBA1 Missense_Mutation p.R211C 0.36 deleterious(0.02) probably_damaging(0.958) TCGA-BR-8680-01 17 27906001 27906001 C T GIT1 Missense_Mutation p.R256Q 0.33 tolerated(0.61) benign(0.378) TCGA-BR-8680-01 17 28405430 28405430 C T EFCAB5 Missense_Mutation p.R979W 0.33 tolerated(0.09) benign(0.07) TCGA-BR-8680-01 17 28545146 28545146 C A SLC6A4 Nonsense_Mutation p.E230* 0.37 TCGA-BR-8680-01 17 28769342 28769342 G A CPD Nonsense_Mutation p.W749* 0.32 TCGA-BR-8680-01 17 29111029 29111029 T C CRLF3 3'UTR 0.33 TCGA-BR-8680-01 17 29541481 29541481 A C NF1 Missense_Mutation p.K469Q 0.42 deleterious(0.01) benign(0.361) TCGA-BR-8680-01 17 29685995 29685995 T G NF1 Missense_Mutation p.F2708V 0.30 deleterious(0) probably_damaging(0.942) TCGA-BR-8680-01 17 29854863 29854863 G A RAB11FIP4 Silent p.V426V 0.29 TCGA-BR-8680-01 17 30192440 30192440 C T UTP6 Silent p.A527A 0.31 TCGA-BR-8680-01 17 30303573 30303573 G A SUZ12 Missense_Mutation p.R286Q 0.38 deleterious(0.05) possibly_damaging(0.704) TCGA-BR-8680-01 17 3030537 3030537 A C OR1G1 Missense_Mutation p.F103L 0.37 deleterious(0.02) benign(0.004) TCGA-BR-8680-01 17 30661574 30661574 G T C17orf75 Missense_Mutation p.T262N 0.54 tolerated(0.1) benign(0.006) TCGA-BR-8680-01 17 30678857 30678857 G T ZNF207 Missense_Mutation p.A32S 0.21 deleterious(0.01) possibly_damaging(0.866) TCGA-BR-8680-01 17 3101260 3101260 G A OR1A2 Missense_Mutation p.V150M 0.42 deleterious(0.04) possibly_damaging(0.517) TCGA-BR-8680-01 17 31092067 31092067 C T MYO1D Silent p.T288T 0.23 TCGA-BR-8680-01 17 3195189 3195189 G A OR3A1 Nonsense_Mutation p.R230* 0.34 TCGA-BR-8680-01 17 3195809 3195809 G A OR3A1 Missense_Mutation p.A23V 0.37 tolerated(0.29) benign(0.004) TCGA-BR-8680-01 17 32597283 32597283 T C CCL7 5'UTR 0.30 TCGA-BR-8680-01 17 32598899 32598899 T C CCL7 3'UTR 0.33 TCGA-BR-8680-01 17 32953302 32953302 G A TMEM132E Missense_Mutation p.R75H 0.25 deleterious(0) probably_damaging(0.997) TCGA-BR-8680-01 17 33513399 33513399 T C UNC45B Missense_Mutation p.Y873H 0.30 tolerated(0.33) benign(0.006) TCGA-BR-8680-01 17 33521053 33521053 C T SLC35G3 Missense_Mutation p.D92N 0.32 tolerated(0.1) benign(0.009) TCGA-BR-8680-01 17 33689883 33689883 A G SLFN11 Missense_Mutation p.I315T 0.34 deleterious(0) probably_damaging(0.978) TCGA-BR-8680-01 17 33738393 33738393 A G SLFN12 Silent p.D567D 0.38 TCGA-BR-8680-01 17 33903184 33903184 T G PEX12 Missense_Mutation p.N233H 0.30 tolerated(0.36) benign(0.005) TCGA-BR-8680-01 17 34235884 34235884 A C AC015849.16 RNA 0.12 TCGA-BR-8680-01 17 3436055 3436055 A G TRPV3 Missense_Mutation p.Y321H 0.34 deleterious(0.01) probably_damaging(0.948) TCGA-BR-8680-01 17 3436154 3436154 C T TRPV3 Missense_Mutation p.D288N 0.28 tolerated(0.05) benign(0.019) TCGA-BR-8680-01 17 34432823 34432823 T G CCL4 3'UTR 0.27 TCGA-BR-8680-01 17 34539886 34539886 T G CCL4L1 Missense_Mutation p.F65C 0.76 deleterious(0) probably_damaging(0.992) TCGA-BR-8680-01 17 34863332 34863332 C T MYO19 Missense_Mutation p.G458D 0.25 deleterious(0.04) benign(0.257) TCGA-BR-8680-01 17 35299591 35299591 G A LHX1 Missense_Mutation p.R257Q 0.56 deleterious(0.01) possibly_damaging(0.609) TCGA-BR-8680-01 17 35378259 35378259 G A AATF Missense_Mutation p.R498Q 0.19 deleterious(0) possibly_damaging(0.81) TCGA-BR-8680-01 17 35550339 35550339 A C ACACA Missense_Mutation p.F1392L 0.34 deleterious(0.03) probably_damaging(0.99) TCGA-BR-8680-01 17 35913722 35913722 A C SYNRG Silent p.S701S 0.36 TCGA-BR-8680-01 17 3593419 3593419 C A P2RX5 Missense_Mutation p.D187Y 0.30 deleterious(0) probably_damaging(0.934) TCGA-BR-8680-01 17 3595070 3595070 C A P2RX5 Missense_Mutation p.K52N 0.32 deleterious(0.03) probably_damaging(0.984) TCGA-BR-8680-01 17 36484565 36484565 G A GPR179 Silent p.I1629I 0.38 TCGA-BR-8680-01 17 36485203 36485203 C A GPR179 Nonsense_Mutation p.E1417* 0.34 TCGA-BR-8680-01 17 37101317 37101317 C T FBXO47 Missense_Mutation p.R230Q 0.34 tolerated(0.96) benign(0.001) TCGA-BR-8680-01 17 37209287 37209287 C A CTD-2206N4.4 5'Flank 0.41 TCGA-BR-8680-01 17 3721585 3721585 C T C17orf85 Missense_Mutation p.E428K 0.31 deleterious(0) probably_damaging(0.972) TCGA-BR-8680-01 17 3724565 3724565 C T C17orf85 Silent p.T326T 0.33 TCGA-BR-8680-01 17 37455249 37455249 G T FBXL20 Missense_Mutation p.A108E 0.38 deleterious(0) benign(0.196) TCGA-BR-8680-01 17 37565245 37565245 G A MED1 Missense_Mutation p.P1077S 0.27 tolerated_low_confidence(0.44) probably_damaging(0.996) TCGA-BR-8680-01 17 37650863 37650863 C T CDK12 Missense_Mutation p.R779C 0.18 probably_damaging(0.999) TCGA-BR-8680-01 17 37922033 37922033 G T IKZF3 3'UTR 0.30 TCGA-BR-8680-01 17 38068679 38068679 C A GSDMB Nonsense_Mutation p.E103* 0.28 TCGA-BR-8680-01 17 38249572 38249572 G A THRA Silent p.P470P 0.32 TCGA-BR-8680-01 17 38458395 38458395 C A CDC6 3'UTR 0.27 TCGA-BR-8680-01 17 38711747 38711747 A C CCR7 Missense_Mutation p.F128L 0.13 tolerated(1) benign(0.001) TCGA-BR-8680-01 17 38907471 38907471 G A KRT25 Silent p.Y259Y 0.32 TCGA-BR-8680-01 17 38926007 38926007 A G KRT26 Missense_Mutation p.V323A 0.32 deleterious(0.01) benign(0.082) TCGA-BR-8680-01 17 38938569 38938569 G A KRT27 Silent p.G59G 0.40 TCGA-BR-8680-01 17 39156107 39156107 G A KRTAP3-2 5'UTR 0.35 TCGA-BR-8680-01 17 3922983 3922983 G T ZZEF1 Missense_Mutation p.F2495L 0.37 tolerated(0.18) benign(0.082) TCGA-BR-8680-01 17 39333898 39333898 G A KRTAP4-2 3'UTR 0.40 TCGA-BR-8680-01 17 39389162 39389162 A C KRTAP9-3 Missense_Mutation p.T137P 0.32 tolerated(0.49) probably_damaging(0.96) TCGA-BR-8680-01 17 39394819 39394819 A C KRTAP9-8 3'UTR 0.18 TCGA-BR-8680-01 17 39580043 39580043 C T KRT37 Silent p.A182A 0.36 TCGA-BR-8680-01 17 39633950 39633950 C T KRT35 Missense_Mutation p.R347H 0.27 tolerated(0.07) probably_damaging(0.967) TCGA-BR-8680-01 17 39634617 39634617 C T KRT35 Missense_Mutation p.S332N 0.22 tolerated(0.43) probably_damaging(0.998) TCGA-BR-8680-01 17 39661466 39661466 C T KRT13 Missense_Mutation p.D113N 0.29 deleterious(0.02) possibly_damaging(0.612) TCGA-BR-8680-01 17 40065299 40065299 C T ACLY Missense_Mutation p.G187S 0.56 tolerated(0.69) possibly_damaging(0.78) TCGA-BR-8680-01 17 40278791 40278791 C T RAB5C Missense_Mutation p.E206K 0.32 deleterious(0.02) benign(0.129) TCGA-BR-8680-01 17 40330965 40330965 G T KCNH4 Silent p.L52L 0.33 TCGA-BR-8680-01 17 40336439 40336439 C A HCRT Missense_Mutation p.K43N 0.48 deleterious(0.02) probably_damaging(0.998) TCGA-BR-8680-01 17 40354820 40354820 G A STAT5B Missense_Mutation p.A695V 0.39 tolerated(0.06) possibly_damaging(0.739) TCGA-BR-8680-01 17 40456604 40456604 G T STAT5A Missense_Mutation p.E438D 0.34 deleterious(0.01) possibly_damaging(0.863) TCGA-BR-8680-01 17 4071204 4071204 G A ANKFY1 Missense_Mutation p.R1169C 0.37 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 17 40767133 40767133 G T TUBG1 3'UTR 0.31 TCGA-BR-8680-01 17 40839829 40839829 G A CNTNAP1 Missense_Mutation p.R379H 0.36 tolerated(0.07) probably_damaging(0.927) TCGA-BR-8680-01 17 4085508 4085508 C T ANKFY1 Missense_Mutation p.A739T 0.35 tolerated(0.1) benign(0.003) TCGA-BR-8680-01 17 41002532 41002532 C A AOC2 3'UTR 0.75 TCGA-BR-8680-01 17 41165527 41165527 T C IFI35 Missense_Mutation p.V139A 0.04 deleterious(0) probably_damaging(0.971) TCGA-BR-8680-01 17 41244869 41244869 C A BRCA1 Missense_Mutation p.K893N 0.39 deleterious(0.01) benign(0.236) TCGA-BR-8680-01 17 41720906 41720906 G A MEOX1 Missense_Mutation p.R198W 0.28 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 17 41878950 41878950 A C MPP3 3'UTR 0.67 TCGA-BR-8680-01 17 41879031 41879031 T G MPP3 3'UTR 0.37 TCGA-BR-8680-01 17 41925966 41925966 C T CD300LG Silent p.F28F 0.36 TCGA-BR-8680-01 17 42452077 42452077 A G ITGA2B Missense_Mutation p.S965P 0.25 deleterious(0.01) possibly_damaging(0.714) TCGA-BR-8680-01 17 42635315 42635315 G A FZD2 Missense_Mutation p.E87K 0.36 deleterious(0.03) benign(0.037) TCGA-BR-8680-01 17 42745389 42745389 T G C17orf104 Missense_Mutation p.L704V 0.33 tolerated(0.09) benign(0.005) TCGA-BR-8680-01 17 42850282 42850282 A G ADAM11 Missense_Mutation p.I246V 0.39 tolerated(1) benign(0.002) TCGA-BR-8680-01 17 42882006 42882006 C T GJC1 Missense_Mutation p.V394I 0.33 tolerated(0.05) probably_damaging(0.939) TCGA-BR-8680-01 17 42926632 42926632 C T HIGD1B Silent p.G37G 0.44 TCGA-BR-8680-01 17 42992513 42992513 G A GFAP Silent p.D114D 0.39 TCGA-BR-8680-01 17 43012671 43012671 G A KIF18B Missense_Mutation p.R143C 0.33 tolerated(0.21) benign(0.009) TCGA-BR-8680-01 17 43332645 43332645 C T SPATA32 Missense_Mutation p.E302K 0.40 tolerated(0.29) benign(0.267) TCGA-BR-8680-01 17 4337402 4337402 C T SPNS3 Missense_Mutation p.A47V 0.37 tolerated(0.2) benign(0.074) TCGA-BR-8680-01 17 43907879 43907879 G A CRHR1 Missense_Mutation p.V247M 0.33 deleterious(0) possibly_damaging(0.836) TCGA-BR-8680-01 17 45455139 45455139 C A EFCAB13 Missense_Mutation p.F460L 0.62 tolerated(0.2) benign(0.007) TCGA-BR-8680-01 17 45560427 45560427 T C MRPL45P2 RNA 0.27 TCGA-BR-8680-01 17 45734311 45734311 T C KPNB1 Missense_Mutation p.V123A 0.31 tolerated(0.54) benign(0.001) TCGA-BR-8680-01 17 4578449 4578449 C T PELP1 Missense_Mutation p.R400H 0.41 probably_damaging(0.996) TCGA-BR-8680-01 17 45822165 45822165 T C TBX21 Silent p.C347C 0.39 TCGA-BR-8680-01 17 46058857 46058857 A G CDK5RAP3 Missense_Mutation p.T504A 0.34 tolerated(0.23) benign(0.005) TCGA-BR-8680-01 17 4638447 4638447 C T CXCL16 Missense_Mutation p.A239T 0.24 tolerated(0.1) benign(0.401) TCGA-BR-8680-01 17 47004529 47004529 G T UBE2Z 3'UTR 0.33 TCGA-BR-8680-01 17 47123723 47123723 C A IGF2BP1 Missense_Mutation p.F543L 0.47 deleterious(0) probably_damaging(0.983) TCGA-BR-8680-01 17 47243530 47243530 C A B4GALNT2 Missense_Mutation p.L397I 0.27 deleterious(0.02) probably_damaging(0.951) TCGA-BR-8680-01 17 47388809 47388809 C T ZNF652 Missense_Mutation p.E392K 0.33 tolerated(0.28) possibly_damaging(0.718) TCGA-BR-8680-01 17 47785121 47785121 A C SLC35B1 Nonsense_Mutation p.Y25* 0.20 TCGA-BR-8680-01 17 47874139 47874139 C A KAT7 Missense_Mutation p.S64Y 0.34 tolerated_low_confidence(0.57) benign(0.202) TCGA-BR-8680-01 17 47893237 47893237 C A KAT7 Missense_Mutation p.L309I 0.41 deleterious(0.02) probably_damaging(0.925) TCGA-BR-8680-01 17 48070831 48070831 T G DLX3 Missense_Mutation p.K150T 0.27 tolerated(0.06) probably_damaging(0.982) TCGA-BR-8680-01 17 4836037 4836037 G A GP1BA Silent p.P46P 0.34 TCGA-BR-8680-01 17 4841845 4841845 G A SLC25A11 Nonsense_Mutation p.R170* 0.35 TCGA-BR-8680-01 17 48445365 48445365 C T MRPL27 3'UTR 0.41 TCGA-BR-8680-01 17 48538054 48538054 C T ACSF2 Missense_Mutation p.R49C 0.33 tolerated(0.17) benign(0.002) TCGA-BR-8680-01 17 48551589 48551589 C T ACSF2 Silent p.I586I 0.12 TCGA-BR-8680-01 17 48773432 48773432 G A ANKRD40 Silent p.L345L 0.37 TCGA-BR-8680-01 17 4927223 4927223 G A KIF1C Missense_Mutation p.R1030H 0.34 deleterious_low_confidence(0) possibly_damaging(0.522) TCGA-BR-8680-01 17 49280149 49280149 T C MBTD1 Missense_Mutation p.T326A 0.41 tolerated(0.28) benign(0) TCGA-BR-8680-01 17 4996377 4996377 A C ZFP3 3'UTR 0.48 TCGA-BR-8680-01 17 5085969 5085969 C T ZNF594 Missense_Mutation p.R528H 0.30 tolerated(0.38) benign(0.001) TCGA-BR-8680-01 17 5086896 5086896 G A ZNF594 Missense_Mutation p.A219V 0.28 tolerated(0.07) probably_damaging(0.996) TCGA-BR-8680-01 17 53798220 53798220 A G TMEM100 Missense_Mutation p.V71A 0.26 tolerated(0.53) probably_damaging(0.987) TCGA-BR-8680-01 17 5434015 5434015 G A NLRP1 Silent p.F1102F 0.25 TCGA-BR-8680-01 17 5442742 5442742 G A NLRP1 Missense_Mutation p.R955C 0.32 tolerated(0.12) benign(0.001) TCGA-BR-8680-01 17 55038341 55038341 C A COIL Missense_Mutation p.D14Y 0.18 deleterious(0) probably_damaging(0.994) TCGA-BR-8680-01 17 56166549 56166549 G A DYNLL2 Missense_Mutation p.R60Q 0.32 tolerated(0.05) benign(0.382) TCGA-BR-8680-01 17 56232801 56232801 G A OR4D1 Missense_Mutation p.G96D 0.37 deleterious(0.03) benign(0.076) TCGA-BR-8680-01 17 56247046 56247046 A C OR4D2 Silent p.S10S 0.30 TCGA-BR-8680-01 17 56348199 56348199 A G MPO Missense_Mutation p.F686L 0.14 deleterious(0.01) probably_damaging(1) TCGA-BR-8680-01 17 56586131 56586131 G A MTMR4 Missense_Mutation p.A122V 0.42 deleterious(0.01) benign(0.175) TCGA-BR-8680-01 17 56598158 56598158 G A SEPT4 Silent p.V456V 0.31 TCGA-BR-8680-01 17 56620179 56620179 G A C17orf47 Missense_Mutation p.L457F 0.27 tolerated(0.1) benign(0.04) TCGA-BR-8680-01 17 57043102 57043102 G A PPM1E Missense_Mutation p.E211K 0.39 tolerated(0.05) possibly_damaging(0.729) TCGA-BR-8680-01 17 57288596 57288596 A G SMG8 Missense_Mutation p.D395G 0.35 deleterious(0.03) benign(0.004) TCGA-BR-8680-01 17 57288693 57288693 C T SMG8 Silent p.F427F 0.33 TCGA-BR-8680-01 17 57344492 57344492 C T GDPD1 Nonsense_Mutation p.R223* 0.46 TCGA-BR-8680-01 17 57760277 57760277 G A CLTC Missense_Mutation p.A1259T 0.32 deleterious(0.01) possibly_damaging(0.792) TCGA-BR-8680-01 17 57775206 57775206 G A PTRH2 Missense_Mutation p.T45M 0.33 tolerated(0.27) benign(0.003) TCGA-BR-8680-01 17 57955475 57955475 C T TUBD1 Missense_Mutation p.R253Q 0.33 tolerated(0.07) benign(0.024) TCGA-BR-8680-01 17 58073290 58073290 A C RP11-178C3.2 RNA 0.24 TCGA-BR-8680-01 17 58143671 58143671 G T HEATR6 Missense_Mutation p.L439I 0.36 tolerated(0.08) benign(0.212) TCGA-BR-8680-01 17 58258686 58258686 G A USP32 Missense_Mutation p.S1516L 0.33 tolerated(0.16) probably_damaging(0.979) TCGA-BR-8680-01 17 58260766 58260766 A G USP32 Missense_Mutation p.S1295P 0.27 deleterious(0) probably_damaging(0.984) TCGA-BR-8680-01 17 58346875 58346875 A C USP32 Missense_Mutation p.D249E 0.33 deleterious(0) probably_damaging(0.992) TCGA-BR-8680-01 17 58740750 58740750 G A PPM1D Missense_Mutation p.R552Q 0.30 deleterious_low_confidence(0.01) probably_damaging(0.97) TCGA-BR-8680-01 17 59147389 59147389 G A BCAS3 Intron 0.31 TCGA-BR-8680-01 17 59479294 59479294 C T TBX2 Silent p.I215I 0.36 TCGA-BR-8680-01 17 59489455 59489455 T C C17orf82 Missense_Mutation p.V40A 0.27 deleterious_low_confidence(0.02) benign(0.294) TCGA-BR-8680-01 17 59763410 59763410 C T BRIP1 Missense_Mutation p.D898N 0.32 tolerated(0.19) benign(0.004) TCGA-BR-8680-01 17 59945352 59945352 C T INTS2 Missense_Mutation p.R1096Q 0.29 deleterious(0.01) probably_damaging(0.982) TCGA-BR-8680-01 17 60038340 60038340 G T MED13 Missense_Mutation p.L1790I 0.34 deleterious(0) probably_damaging(0.982) TCGA-BR-8680-01 17 60042387 60042387 C T MED13 Silent p.P1608P 0.26 TCGA-BR-8680-01 17 60484019 60484019 C A EFCAB3 Missense_Mutation p.L275I 0.33 deleterious(0.01) probably_damaging(0.928) TCGA-BR-8680-01 17 60741967 60741967 C T MRC2 Silent p.G59G 0.29 TCGA-BR-8680-01 17 61278268 61278268 C T TANC2 Missense_Mutation p.A166V 0.30 tolerated(0.07) benign(0.066) TCGA-BR-8680-01 17 61466084 61466084 C T TANC2 Missense_Mutation p.A853V 0.43 tolerated(0.08) benign(0.042) TCGA-BR-8680-01 17 61684818 61684818 T G TACO1 Silent p.V229V 0.27 TCGA-BR-8680-01 17 61902505 61902505 T G FTSJ3 Missense_Mutation p.K205T 0.32 deleterious(0.03) possibly_damaging(0.636) TCGA-BR-8680-01 17 61949807 61949807 G A CSH2 Intron 0.34 TCGA-BR-8680-01 17 62850518 62850518 C A LRRC37A3 3'UTR 0.33 TCGA-BR-8680-01 17 62892249 62892249 G T LRRC37A3 Missense_Mutation p.S376Y 0.22 tolerated(0.09) benign(0.407) TCGA-BR-8680-01 17 63206625 63206625 C T RGS9 Missense_Mutation p.R437W 0.32 deleterious(0.04) benign(0.286) TCGA-BR-8680-01 17 63685267 63685267 C A CEP112 Nonsense_Mutation p.E893* 0.40 TCGA-BR-8680-01 17 6387538 6387538 C T PITPNM3 Missense_Mutation p.E117K 0.35 tolerated(0.61) benign(0.005) TCGA-BR-8680-01 17 64210746 64210746 T G APOH Missense_Mutation p.K269N 0.40 deleterious(0.03) possibly_damaging(0.487) TCGA-BR-8680-01 17 64641554 64641554 G A PRKCA Missense_Mutation p.G152R 0.44 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 17 64881136 64881136 C T CACNG5 Missense_Mutation p.R203W 0.26 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 17 65132142 65132142 T G HELZ Missense_Mutation p.Q1042H 0.42 deleterious(0) probably_damaging(0.997) TCGA-BR-8680-01 17 6531586 6531586 G A KIAA0753 Missense_Mutation p.S190L 0.28 deleterious(0.03) benign(0.006) TCGA-BR-8680-01 17 65336909 65336909 C A PSMD12 3'UTR 0.53 TCGA-BR-8680-01 17 65899998 65899998 G A BPTF Silent p.A879A 0.30 TCGA-BR-8680-01 17 65908574 65908574 G T BPTF Missense_Mutation p.S1525I 0.37 possibly_damaging(0.713) TCGA-BR-8680-01 17 66033597 66033597 A C KPNA2 Missense_Mutation p.N67H 0.32 tolerated(0.14) benign(0.049) TCGA-BR-8680-01 17 66038403 66038403 T C KPNA2 Missense_Mutation p.S169P 0.33 deleterious(0.04) possibly_damaging(0.797) TCGA-BR-8680-01 17 66251928 66251928 G T AMZ2 Nonsense_Mutation p.E280* 0.30 TCGA-BR-8680-01 17 66267060 66267060 C T SLC16A6 Missense_Mutation p.G414D 0.22 deleterious(0.02) probably_damaging(1) TCGA-BR-8680-01 17 6661423 6661423 C T XAF1 Silent p.V16V 0.33 TCGA-BR-8680-01 17 6683183 6683183 C A FBXO39 5'UTR 0.35 TCGA-BR-8680-01 17 66913584 66913584 C A ABCA8 Missense_Mutation p.V646L 0.35 deleterious(0.04) benign(0.03) TCGA-BR-8680-01 17 66925729 66925729 G A ABCA8 Silent p.S304S 0.42 TCGA-BR-8680-01 17 67016572 67016572 G A ABCA9 Missense_Mutation p.R853C 0.59 deleterious(0.01) benign(0.337) TCGA-BR-8680-01 17 6703325 6703325 G T TEKT1 3'UTR 0.34 TCGA-BR-8680-01 17 67083602 67083602 T G ABCA6 Missense_Mutation p.Q1237H 0.12 deleterious(0) possibly_damaging(0.764) TCGA-BR-8680-01 17 67084326 67084326 C T ABCA6 Missense_Mutation p.R1227Q 0.17 tolerated(0.12) benign(0.01) TCGA-BR-8680-01 17 67101676 67101676 G A ABCA6 Silent p.N889N 0.32 TCGA-BR-8680-01 17 67103843 67103843 C T ABCA6 Missense_Mutation p.E795K 0.35 tolerated(0.09) benign(0.002) TCGA-BR-8680-01 17 67119483 67119483 T G ABCA6 Silent p.R445R 0.24 TCGA-BR-8680-01 17 67130778 67130778 A G ABCA6 Splice_Site p.X188_splice 0.41 TCGA-BR-8680-01 17 67187325 67187325 T G ABCA10 Missense_Mutation p.K668T 0.23 tolerated(0.11) benign(0.045) TCGA-BR-8680-01 17 67243576 67243576 C A ABCA5 3'UTR 0.43 TCGA-BR-8680-01 17 67246653 67246653 C A ABCA5 Nonsense_Mutation p.E1549* 0.32 TCGA-BR-8680-01 17 67305533 67305533 T G ABCA5 Missense_Mutation p.K113N 0.35 tolerated(0.18) benign(0.008) TCGA-BR-8680-01 17 68171120 68171120 C T KCNJ2 5'UTR 0.43 TCGA-BR-8680-01 17 7004769 7004769 T G ASGR2 3'UTR 0.31 TCGA-BR-8680-01 17 708413 708413 C T NXN Missense_Mutation p.D299N 0.42 deleterious(0.01) possibly_damaging(0.86) TCGA-BR-8680-01 17 71197534 71197534 C A COG1 Missense_Mutation p.S523Y 0.29 deleterious(0.03) possibly_damaging(0.806) TCGA-BR-8680-01 17 71232871 71232871 C T C17orf80 Missense_Mutation p.S417F 0.39 tolerated(0.07) probably_damaging(0.989) TCGA-BR-8680-01 17 7162315 7162315 C T ELP5 Intron 0.44 TCGA-BR-8680-01 17 72245117 72245117 T G TTYH2 Intron 0.35 TCGA-BR-8680-01 17 72436249 72436249 G A GPRC5C Missense_Mutation p.D157N 0.38 tolerated(0.27) benign(0.019) TCGA-BR-8680-01 17 72521955 72521955 A G CD300LB Missense_Mutation p.V138A 0.32 deleterious(0.04) benign(0.009) TCGA-BR-8680-01 17 72588512 72588512 G A C17orf77 Silent p.K109K 0.35 TCGA-BR-8680-01 17 72737009 72737009 G T RAB37 Missense_Mutation p.D71Y 0.33 deleterious(0) probably_damaging(0.985) TCGA-BR-8680-01 17 72741433 72741433 C A RAB37 Intron 0.21 TCGA-BR-8680-01 17 72939782 72939782 C T OTOP3 Silent p.I256I 0.36 TCGA-BR-8680-01 17 72947703 72947703 C T HID1 Missense_Mutation p.D777N 0.41 deleterious(0.02) probably_damaging(0.995) TCGA-BR-8680-01 17 73539480 73539480 C A LLGL2 Intron 0.30 TCGA-BR-8680-01 17 73944437 73944437 A G ACOX1 Silent p.F610F 0.32 TCGA-BR-8680-01 17 73951988 73951988 G A ACOX1 Silent p.L193L 0.35 TCGA-BR-8680-01 17 74090528 74090528 C A EXOC7 Missense_Mutation p.D259Y 0.31 tolerated(0.19) possibly_damaging(0.781) TCGA-BR-8680-01 17 7414556 7414556 T C POLR2A Missense_Mutation p.M1279T 0.15 possibly_damaging(0.665) TCGA-BR-8680-01 17 7415517 7415517 A G POLR2A Missense_Mutation p.D1449G 0.26 probably_damaging(1) TCGA-BR-8680-01 17 74772498 74772498 G A MFSD11 Missense_Mutation p.A354T 0.31 deleterious(0.01) probably_damaging(0.984) TCGA-BR-8680-01 17 7480012 7480012 T C EIF4A1 Splice_Site p.X172_splice 0.35 TCGA-BR-8680-01 17 75212855 75212855 T C SEC14L1 3'UTR 0.35 TCGA-BR-8680-01 17 7557412 7557412 G A ATP1B2 Missense_Mutation p.R130H 0.32 tolerated(0.18) possibly_damaging(0.847) TCGA-BR-8680-01 17 7604072 7604072 G A WRAP53 Missense_Mutation p.R219Q 0.29 tolerated(0.24) possibly_damaging(0.787) TCGA-BR-8680-01 17 76471877 76471877 G T DNAH17 Silent p.I2717I 0.29 TCGA-BR-8680-01 17 76548826 76548826 T C DNAH17 Missense_Mutation p.D747G 0.30 probably_damaging(0.96) TCGA-BR-8680-01 17 76554208 76554208 G A DNAH17 Silent p.I720I 0.28 TCGA-BR-8680-01 17 7660464 7660464 A G DNAH2 Missense_Mutation p.T654A 0.29 benign(0.142) TCGA-BR-8680-01 17 7662770 7662770 C T DNAH2 Missense_Mutation p.R827W 0.37 possibly_damaging(0.776) TCGA-BR-8680-01 17 76832327 76832327 A G USP36 Missense_Mutation p.I40T 0.20 deleterious(0) probably_damaging(0.913) TCGA-BR-8680-01 17 77922709 77922709 G T TBC1D16 Missense_Mutation p.F501L 0.36 deleterious(0.04) benign(0.367) TCGA-BR-8680-01 17 7809005 7809005 G A CHD3 Missense_Mutation p.R1461Q 0.28 possibly_damaging(0.553) TCGA-BR-8680-01 17 78162210 78162210 A G CARD14 Missense_Mutation p.N237S 0.26 tolerated(0.19) benign(0.001) TCGA-BR-8680-01 17 78321073 78321073 G T RNF213 Missense_Mutation p.A2980S 0.24 possibly_damaging(0.804) TCGA-BR-8680-01 17 78354771 78354771 C T RNF213 Missense_Mutation p.A4594V 0.31 possibly_damaging(0.881) TCGA-BR-8680-01 17 78796935 78796935 T G RPTOR Missense_Mutation p.F350V 0.07 deleterious(0) probably_damaging(0.94) TCGA-BR-8680-01 17 79095489 79095489 G A AATK Silent p.C749C 0.33 TCGA-BR-8680-01 17 79096523 79096523 C T AATK Missense_Mutation p.E405K 0.33 deleterious(0.01) probably_damaging(0.981) TCGA-BR-8680-01 17 7950271 7950271 A G ALOX15B Missense_Mutation p.N445S 0.35 tolerated(0.29) benign(0.021) TCGA-BR-8680-01 17 79615131 79615131 C T TSPAN10 Missense_Mutation p.A292V 0.36 tolerated(0.47) possibly_damaging(0.682) TCGA-BR-8680-01 17 79632445 79632445 T G OXLD1 Missense_Mutation p.K77T 0.32 tolerated(0.07) possibly_damaging(0.892) TCGA-BR-8680-01 17 7980465 7980465 T C ALOX12B Missense_Mutation p.D373G 0.39 deleterious(0) probably_damaging(0.995) TCGA-BR-8680-01 17 79873485 79873485 A G SIRT7 Splice_Site p.X136_splice 0.36 TCGA-BR-8680-01 17 79911050 79911050 C A NOTUM Missense_Mutation p.K426N 0.26 tolerated(0.11) benign(0.112) TCGA-BR-8680-01 17 8021304 8021304 G A ALOXE3 Missense_Mutation p.A134V 0.28 tolerated(0.24) benign(0.021) TCGA-BR-8680-01 17 8026394 8026394 G C HES7 Missense_Mutation p.S31R 0.29 tolerated(0.06) probably_damaging(0.975) TCGA-BR-8680-01 17 80443437 80443437 G A NARF Missense_Mutation p.A346T 0.37 tolerated(0.06) possibly_damaging(0.788) TCGA-BR-8680-01 17 8053326 8053326 C T PER1 Silent p.T164T 0.10 TCGA-BR-8680-01 17 80790171 80790171 T C ZNF750 Missense_Mutation p.T54A 0.34 deleterious(0) probably_damaging(0.996) TCGA-BR-8680-01 17 80863821 80863821 G A TBCD Missense_Mutation p.R605K 0.27 tolerated(0.77) benign(0.002) TCGA-BR-8680-01 17 8139580 8139580 G A CTC1 Silent p.I291I 0.23 TCGA-BR-8680-01 17 8243369 8243369 G T ODF4 5'UTR 0.41 TCGA-BR-8680-01 17 8409702 8409702 G A MYH10 Missense_Mutation p.A1107V 0.32 benign(0.115) TCGA-BR-8680-01 17 8644901 8644901 C T CCDC42 Missense_Mutation p.R128H 0.39 tolerated(0.09) benign(0.015) TCGA-BR-8680-01 17 8660742 8660742 C T SPDYE4 Missense_Mutation p.E60K 0.29 tolerated(0.14) benign(0.305) TCGA-BR-8680-01 17 8701241 8701241 C T MFSD6L Missense_Mutation p.E400K 0.43 deleterious(0.01) probably_damaging(0.985) TCGA-BR-8680-01 17 9066163 9066163 G A NTN1 Missense_Mutation p.R351H 0.33 deleterious(0) possibly_damaging(0.885) TCGA-BR-8680-01 17 9471774 9471774 C T STX8 Missense_Mutation p.D11N 0.42 tolerated(0.06) probably_damaging(0.959) TCGA-BR-8680-01 17 9536289 9536289 T C WDR16 Missense_Mutation p.V420A 0.24 tolerated(0.06) possibly_damaging(0.85) TCGA-BR-8680-01 17 9830036 9830036 C A GAS7 Missense_Mutation p.K312N 0.26 deleterious(0) probably_damaging(0.989) TCGA-BR-8680-01 18 10488027 10488027 C T APCDD1 Missense_Mutation p.R513C 0.44 deleterious_low_confidence(0.05) benign(0.003) TCGA-BR-8680-01 18 10671566 10671566 T C PIEZO2 Silent p.S2739S 0.33 TCGA-BR-8680-01 18 12479831 12479831 G T SPIRE1 Nonsense_Mutation p.S424* 0.30 TCGA-BR-8680-01 18 12817275 12817275 G T PTPN2 Missense_Mutation p.F195L 0.39 deleterious(0) probably_damaging(0.991) TCGA-BR-8680-01 18 13069153 13069153 G A CEP192 Silent p.G1676G 0.34 TCGA-BR-8680-01 18 13666620 13666620 T G FAM210A Silent p.P226P 0.23 TCGA-BR-8680-01 18 13734563 13734563 G T RNMT Missense_Mutation p.R173I 0.34 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 18 14478501 14478501 A C CXADRP3 RNA 0.22 TCGA-BR-8680-01 18 14478662 14478662 T - CXADRP3 RNA 0.30 TCGA-BR-8680-01 18 14478905 14478905 T G CXADRP3 RNA 0.35 TCGA-BR-8680-01 18 14511935 14511935 C T POTEC Missense_Mutation p.E531K 0.30 deleterious_low_confidence(0.02) probably_damaging(0.931) TCGA-BR-8680-01 18 14534909 14534909 C A POTEC Missense_Mutation p.R303I 0.10 tolerated(0.09) probably_damaging(0.985) TCGA-BR-8680-01 18 14534929 14534929 A C POTEC Silent p.A296A 0.12 TCGA-BR-8680-01 18 15316643 15316643 C A RNU6-721P 3'Flank 0.25 TCGA-BR-8680-01 18 18622574 18622574 C A ROCK1 Nonsense_Mutation p.E258* 0.35 TCGA-BR-8680-01 18 18629740 18629740 C T ROCK1 Splice_Site p.X92_splice 0.31 TCGA-BR-8680-01 18 19144267 19144267 C T ESCO1 Missense_Mutation p.R573Q 0.31 tolerated(0.31) benign(0) TCGA-BR-8680-01 18 19153793 19153793 C T ESCO1 Missense_Mutation p.E338K 0.23 tolerated(0.13) benign(0.02) TCGA-BR-8680-01 18 19284546 19284546 G T ABHD3 Missense_Mutation p.F27L 0.20 tolerated(0.9) benign(0.001) TCGA-BR-8680-01 18 19371466 19371466 G A MIB1 Missense_Mutation p.R347Q 0.36 tolerated(0.6) possibly_damaging(0.539) TCGA-BR-8680-01 18 19996468 19996468 G A CTAGE1 Missense_Mutation p.A436V 0.29 deleterious(0.01) probably_damaging(0.991) TCGA-BR-8680-01 18 21095901 21095901 G A C18orf8 Missense_Mutation p.A164T 0.32 tolerated(0.39) benign(0) TCGA-BR-8680-01 18 21404477 21404477 C A LAMA3 Nonsense_Mutation p.S840* 0.28 TCGA-BR-8680-01 18 21461926 21461926 G T LAMA3 Missense_Mutation p.E1713D 0.30 benign(0.009) TCGA-BR-8680-01 18 22805217 22805217 C T ZNF521 Missense_Mutation p.D889N 0.38 tolerated(0.35) possibly_damaging(0.893) TCGA-BR-8680-01 18 23895348 23895348 G T TAF4B Missense_Mutation p.R663I 0.36 tolerated(0.09) probably_damaging(0.951) TCGA-BR-8680-01 18 24035694 24035694 G T KCTD1 3'UTR 0.28 TCGA-BR-8680-01 18 24442576 24442576 A C AQP4 Intron 0.38 TCGA-BR-8680-01 18 24722665 24722665 C T CHST9 Missense_Mutation p.E37K 0.33 tolerated(0.06) possibly_damaging(0.606) TCGA-BR-8680-01 18 2577854 2577854 C T NDC80 Nonsense_Mutation p.R97* 0.35 TCGA-BR-8680-01 18 2577969 2577969 T G NDC80 Missense_Mutation p.F102C 0.29 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 18 2667021 2667021 A C SMCHD1 Missense_Mutation p.N139H 0.53 deleterious(0.02) probably_damaging(1) TCGA-BR-8680-01 18 2771569 2771569 C T SMCHD1 Nonsense_Mutation p.R1669* 0.30 TCGA-BR-8680-01 18 28669436 28669436 C T DSC2 Missense_Mutation p.R199H 0.38 deleterious(0.02) possibly_damaging(0.875) TCGA-BR-8680-01 18 2891625 2891625 T C EMILIN2 Silent p.R500R 0.32 TCGA-BR-8680-01 18 28925982 28925982 G A DSG1 Missense_Mutation p.E641K 0.38 tolerated(0.23) benign(0.065) TCGA-BR-8680-01 18 28971169 28971169 A C DSG4 Missense_Mutation p.K271N 0.30 tolerated(0.11) possibly_damaging(0.479) TCGA-BR-8680-01 18 29122786 29122786 G A DSG2 Missense_Mutation p.E769K 0.31 deleterious(0.01) probably_damaging(0.965) TCGA-BR-8680-01 18 29340392 29340392 C T SLC25A52 Missense_Mutation p.R88Q 0.30 tolerated(0.2) benign(0.033) TCGA-BR-8680-01 18 2945859 2945859 A G LPIN2 Intron 0.23 TCGA-BR-8680-01 18 29693732 29693732 C A RNF138 Missense_Mutation p.H101N 0.28 deleterious(0) probably_damaging(0.998) TCGA-BR-8680-01 18 30554590 30554590 A G CCDC178 Missense_Mutation p.V815A 0.27 deleterious(0.03) possibly_damaging(0.723) TCGA-BR-8680-01 18 31323516 31323516 C A ASXL3 Missense_Mutation p.S1235Y 0.36 possibly_damaging(0.526) TCGA-BR-8680-01 18 31599432 31599432 C T NOL4 Silent p.Q302Q 0.24 TCGA-BR-8680-01 18 31803261 31803261 C T NOL4 5'UTR 0.38 TCGA-BR-8680-01 18 32409170 32409170 A G DTNA Intron 0.35 TCGA-BR-8680-01 18 32431887 32431887 G T DTNA Missense_Mutation p.K422N 0.24 deleterious(0) probably_damaging(0.996) TCGA-BR-8680-01 18 32833515 32833515 T G ZSCAN30 Missense_Mutation p.I462L 0.31 deleterious(0.01) benign(0.257) TCGA-BR-8680-01 18 32837896 32837896 T C ZSCAN30 Intron 0.39 TCGA-BR-8680-01 18 33689577 33689577 G A SLC39A6 Silent p.I749I 0.42 TCGA-BR-8680-01 18 33706546 33706546 C T SLC39A6 Missense_Mutation p.R142Q 0.22 tolerated(0.25) benign(0.004) TCGA-BR-8680-01 18 33726217 33726217 G A ELP2 Missense_Mutation p.R398Q 0.36 deleterious(0.02) possibly_damaging(0.621) TCGA-BR-8680-01 18 33840070 33840070 A C MOCOS Missense_Mutation p.I781L 0.34 tolerated(0.08) benign(0.05) TCGA-BR-8680-01 18 34376819 34376819 A C TPGS2 Silent p.T284T 0.33 TCGA-BR-8680-01 18 346509 346509 G A COLEC12 Silent p.C371C 0.30 TCGA-BR-8680-01 18 347104 347104 G A COLEC12 Missense_Mutation p.A173V 0.35 tolerated(0.09) probably_damaging(0.939) TCGA-BR-8680-01 18 348100 348100 T G COLEC12 Missense_Mutation p.K82T 0.22 deleterious(0) probably_damaging(0.932) TCGA-BR-8680-01 18 34854414 34854414 C A CELF4 Missense_Mutation p.A221S 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-BR-8680-01 18 39537548 39537548 G A PIK3C3 Missense_Mutation p.G28R 0.34 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 18 39593453 39593453 A C PIK3C3 Missense_Mutation p.E406D 0.35 tolerated(0.08) benign(0.136) TCGA-BR-8680-01 18 42532601 42532601 C A SETBP1 Missense_Mutation p.S1099Y 0.32 deleterious(0.01) possibly_damaging(0.658) TCGA-BR-8680-01 18 43459029 43459029 C A EPG5 Missense_Mutation p.D1940Y 0.36 deleterious(0.01) possibly_damaging(0.739) TCGA-BR-8680-01 18 43502362 43502362 C T EPG5 Missense_Mutation p.A1015T 0.26 tolerated(0.15) benign(0.091) TCGA-BR-8680-01 18 43519684 43519684 A G EPG5 Missense_Mutation p.Y661H 0.39 deleterious(0) possibly_damaging(0.528) TCGA-BR-8680-01 18 44561339 44561339 G A TCEB3B Silent p.F99F 0.34 TCGA-BR-8680-01 18 44662730 44662730 G A HDHD2 Silent p.G27G 0.37 TCGA-BR-8680-01 18 44775126 44775126 G A SKOR2 Silent p.F143F 0.44 TCGA-BR-8680-01 18 47014895 47014895 C T RPL17 Silent p.R183R 0.21 TCGA-BR-8680-01 18 48241532 48241532 C T MAPK4 Silent p.I210I 0.32 TCGA-BR-8680-01 18 50451736 50451736 C T DCC Silent p.V327V 0.54 TCGA-BR-8680-01 18 51820532 51820532 G T POLI Nonsense_Mutation p.E640* 0.58 TCGA-BR-8680-01 18 51851142 51851142 A C STARD6 Missense_Mutation p.F195V 0.57 deleterious(0.03) benign(0.006) TCGA-BR-8680-01 18 51886948 51886948 G A C18orf54 Silent p.A2A 0.57 TCGA-BR-8680-01 18 5415967 5415967 G T EPB41L3 Silent p.I639I 0.26 TCGA-BR-8680-01 18 55282941 55282941 C T NARS Missense_Mutation p.E92K 0.41 tolerated(0.38) benign(0.013) TCGA-BR-8680-01 18 55336558 55336558 C A ATP8B1 Missense_Mutation p.D697Y 0.36 deleterious(0) probably_damaging(0.981) TCGA-BR-8680-01 18 56203437 56203437 G T ALPK2 Missense_Mutation p.L1328I 0.11 tolerated(0.17) benign(0.346) TCGA-BR-8680-01 18 56204821 56204821 T C ALPK2 Silent p.T866T 0.47 TCGA-BR-8680-01 18 57013239 57013239 A C LMAN1 Nonsense_Mutation p.Y289* 0.57 TCGA-BR-8680-01 18 5890224 5890224 T G TMEM200C Missense_Mutation p.E613D 0.40 tolerated(0.18) possibly_damaging(0.636) TCGA-BR-8680-01 18 59895681 59895681 A G KIAA1468 Missense_Mutation p.N433S 0.41 tolerated(0.48) benign(0.001) TCGA-BR-8680-01 18 60985241 60985241 G A BCL2 Intron 0.54 TCGA-BR-8680-01 18 61022741 61022741 A G KDSR Missense_Mutation p.V104A 0.29 tolerated(0.86) benign(0.023) TCGA-BR-8680-01 18 61060766 61060766 C T VPS4B Missense_Mutation p.R370Q 0.67 tolerated(0.5) benign(0.022) TCGA-BR-8680-01 18 61261591 61261591 A C SERPINB13 Missense_Mutation p.K159Q 0.41 deleterious(0) possibly_damaging(0.688) TCGA-BR-8680-01 18 61558832 61558832 G T SERPINB2 Missense_Mutation p.D52Y 0.63 deleterious(0.04) possibly_damaging(0.794) TCGA-BR-8680-01 18 61570322 61570322 C T SERPINB2 Missense_Mutation p.S344L 0.47 deleterious(0) probably_damaging(0.943) TCGA-BR-8680-01 18 61582874 61582874 T G SERPINB10 Missense_Mutation p.L44V 0.55 deleterious(0.01) benign(0.212) TCGA-BR-8680-01 18 63430218 63430218 G A CDH7 Missense_Mutation p.R47H 0.13 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 18 64176344 64176344 G A CDH19 Silent p.D572D 0.55 TCGA-BR-8680-01 18 65179358 65179358 T C DSEL Missense_Mutation p.K840E 0.53 deleterious(0.03) benign(0.147) TCGA-BR-8680-01 18 65181050 65181050 T C DSEL Missense_Mutation p.N276D 0.56 tolerated(0.15) benign(0.008) TCGA-BR-8680-01 18 674310 674310 T G ENOSF1 Missense_Mutation p.N450H 0.33 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-BR-8680-01 18 67993118 67993118 C A SOCS6 Missense_Mutation p.S405Y 0.58 deleterious(0) probably_damaging(0.994) TCGA-BR-8680-01 18 6837248 6837248 C T ARHGAP28 5'UTR 0.45 TCGA-BR-8680-01 18 6889954 6889954 T G ARHGAP28 Missense_Mutation p.I376S 0.09 deleterious(0) probably_damaging(0.959) TCGA-BR-8680-01 18 6943388 6943388 A G LAMA1 Missense_Mutation p.V2953A 0.40 tolerated(0.06) probably_damaging(1) TCGA-BR-8680-01 18 6956679 6956679 C T LAMA1 Missense_Mutation p.D2684N 0.34 tolerated(0.34) benign(0.001) TCGA-BR-8680-01 18 6959410 6959410 G T LAMA1 Missense_Mutation p.L2570I 0.34 tolerated(0.31) benign(0.052) TCGA-BR-8680-01 18 6986331 6986331 T C LAMA1 Silent p.L1728L 0.24 TCGA-BR-8680-01 18 72229308 72229308 G A CNDP1 Missense_Mutation p.D165N 0.46 deleterious(0.01) possibly_damaging(0.907) TCGA-BR-8680-01 18 74627729 74627729 G A ZNF236 Missense_Mutation p.R1061Q 0.40 deleterious(0) probably_damaging(0.998) TCGA-BR-8680-01 18 76753496 76753496 C T SALL3 Missense_Mutation p.S502L 0.54 deleterious(0) probably_damaging(0.963) TCGA-BR-8680-01 18 76754848 76754848 C T SALL3 Missense_Mutation p.R953C 0.57 deleterious(0.03) probably_damaging(0.982) TCGA-BR-8680-01 18 77211696 77211696 C T NFATC1 Silent p.L582L 0.43 TCGA-BR-8680-01 18 77246279 77246279 T G NFATC1 Missense_Mutation p.D695E 0.49 tolerated(0.63) benign(0.37) TCGA-BR-8680-01 18 77456022 77456022 G A CTDP1 Silent p.A148A 0.45 TCGA-BR-8680-01 18 77623869 77623869 G A KCNG2 Missense_Mutation p.E68K 0.24 deleterious(0) benign(0.409) TCGA-BR-8680-01 18 7888319 7888319 C T PTPRM Missense_Mutation p.R138C 0.29 deleterious(0) possibly_damaging(0.552) TCGA-BR-8680-01 18 8085834 8085834 C T PTPRM Missense_Mutation p.P573S 0.30 tolerated(0.15) benign(0.256) TCGA-BR-8680-01 18 8113723 8113723 G T PTPRM Missense_Mutation p.R699I 0.28 tolerated(0.1) benign(0.004) TCGA-BR-8680-01 18 8387085 8387085 C T PTPRM Missense_Mutation p.R1354W 0.30 deleterious(0.02) probably_damaging(0.997) TCGA-BR-8680-01 18 8638257 8638257 T C RAB12 Silent p.C244C 0.28 TCGA-BR-8680-01 18 909593 909593 A C ADCYAP1 Missense_Mutation p.K163T 0.30 deleterious(0.02) probably_damaging(0.972) TCGA-BR-8680-01 18 9255701 9255701 A C ANKRD12 Missense_Mutation p.E812D 0.36 tolerated_low_confidence(0.15) benign(0.165) TCGA-BR-8680-01 19 10071116 10071116 C A COL5A3 Nonsense_Mutation p.E1737* 0.27 TCGA-BR-8680-01 19 10127761 10127761 G T RDH8 Missense_Mutation p.K64N 0.27 deleterious(0.01) possibly_damaging(0.749) TCGA-BR-8680-01 19 10259675 10259675 A G DNMT1 Missense_Mutation p.S869P 0.33 tolerated(0.28) benign(0) TCGA-BR-8680-01 19 10267136 10267136 C T DNMT1 Missense_Mutation p.E444K 0.27 deleterious(0) probably_damaging(0.993) TCGA-BR-8680-01 19 10528390 10528390 C T PDE4A 5'Flank 0.44 TCGA-BR-8680-01 19 1053340 1053340 T G ABCA7 Missense_Mutation p.L1078R 0.38 deleterious(0.01) possibly_damaging(0.864) TCGA-BR-8680-01 19 10561292 10561292 G A PDE4A Missense_Mutation p.G212S 0.37 tolerated(0.2) benign(0.009) TCGA-BR-8680-01 19 10610561 10610561 C T KEAP1 Missense_Mutation p.R50H 0.39 tolerated(0.15) probably_damaging(0.926) TCGA-BR-8680-01 19 10886518 10886518 G A DNM2 Silent p.T175T 0.34 TCGA-BR-8680-01 19 10908128 10908128 G A DNM2 Silent p.P423P 0.31 TCGA-BR-8680-01 19 11352862 11352862 G T DOCK6 Missense_Mutation p.S501Y 0.40 deleterious(0) probably_damaging(0.971) TCGA-BR-8680-01 19 11516087 11516087 G A RGL3 Missense_Mutation p.R338W 0.24 deleterious(0) probably_damaging(0.998) TCGA-BR-8680-01 19 11728369 11728369 C T ZNF627 Nonsense_Mutation p.R351* 0.32 TCGA-BR-8680-01 19 11728453 11728453 C T ZNF627 Nonsense_Mutation p.R379* 0.30 TCGA-BR-8680-01 19 11796214 11796214 G T ZNF833P RNA 0.39 TCGA-BR-8680-01 19 11796286 11796286 G A ZNF833P RNA 0.42 TCGA-BR-8680-01 19 11891955 11891955 G T ZNF441 Missense_Mutation p.R439I 0.35 deleterious(0.01) benign(0.055) TCGA-BR-8680-01 19 11891986 11891986 T C ZNF441 Silent p.C449C 0.31 TCGA-BR-8680-01 19 11916972 11916972 G A ZNF491 Silent p.Q68Q 0.33 TCGA-BR-8680-01 19 11917544 11917544 G A ZNF491 Missense_Mutation p.R259Q 0.31 tolerated(0.95) benign(0.011) TCGA-BR-8680-01 19 11942676 11942676 G A ZNF440 Missense_Mutation p.E229K 0.34 tolerated(0.33) probably_damaging(0.998) TCGA-BR-8680-01 19 11976850 11976850 T A ZNF439 5'UTR 0.22 TCGA-BR-8680-01 19 11978700 11978700 T C ZNF439 Silent p.C272C 0.32 TCGA-BR-8680-01 19 11979511 11979511 C T ZNF439 3'UTR 0.38 TCGA-BR-8680-01 19 12060493 12060493 C T ZNF700 Nonsense_Mutation p.R552* 0.36 TCGA-BR-8680-01 19 12125892 12125892 T G ZNF433 Missense_Mutation p.K597T 0.37 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 19 12155208 12155208 C A ZNF878 Missense_Mutation p.E336D 0.29 tolerated(0.07) possibly_damaging(0.778) TCGA-BR-8680-01 19 12155980 12155980 T G ZNF878 Missense_Mutation p.Q79P 0.26 tolerated(0.06) possibly_damaging(0.593) TCGA-BR-8680-01 19 12187077 12187077 A G ZNF844 Missense_Mutation p.D381G 0.29 tolerated(0.26) benign(0) TCGA-BR-8680-01 19 12243483 12243483 A C ZNF20 Nonsense_Mutation p.Y506* 0.13 TCGA-BR-8680-01 19 12256532 12256532 G A ZNF625 Silent p.S233S 0.34 TCGA-BR-8680-01 19 12361094 12361094 G A ZNF44 Silent p.D41D 0.36 TCGA-BR-8680-01 19 12384420 12384420 C A ZNF44 Missense_Mutation p.R265I 0.30 deleterious(0.02) probably_damaging(0.999) TCGA-BR-8680-01 19 12490820 12490820 C A CTD-3105H18.14 3'UTR 0.37 TCGA-BR-8680-01 19 12491521 12491521 A G CTD-3105H18.14 3'UTR 0.34 TCGA-BR-8680-01 19 12491744 12491744 C A CTD-3105H18.14 3'UTR 0.37 TCGA-BR-8680-01 19 12502322 12502322 C T ZNF799 Missense_Mutation p.R297Q 0.36 tolerated(0.52) benign(0.015) TCGA-BR-8680-01 19 12575681 12575681 C T ZNF709 Missense_Mutation p.R352Q 0.33 tolerated(0.9) probably_damaging(0.99) TCGA-BR-8680-01 19 12637684 12637684 C A ZNF564 Missense_Mutation p.R413I 0.34 deleterious(0.04) possibly_damaging(0.565) TCGA-BR-8680-01 19 12691588 12691588 C T ZNF490 Missense_Mutation p.R434Q 0.36 tolerated(0.76) benign(0.269) TCGA-BR-8680-01 19 12692305 12692305 T G ZNF490 Missense_Mutation p.K195T 0.32 tolerated(0.13) benign(0.331) TCGA-BR-8680-01 19 13060204 13060204 G T RAD23A Missense_Mutation p.E265D 0.24 tolerated(0.29) benign(0.019) TCGA-BR-8680-01 19 13221113 13221113 C A TRMT1 Missense_Mutation p.R293I 0.29 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 19 13372361 13372361 G A CACNA1A Silent p.L1385L 0.69 TCGA-BR-8680-01 19 13373570 13373570 A G CACNA1A Missense_Mutation p.I1356T 0.30 possibly_damaging(0.702) TCGA-BR-8680-01 19 13409910 13409910 T C CACNA1A Missense_Mutation p.D846G 0.41 benign(0.005) TCGA-BR-8680-01 19 13928150 13928150 C A ZSWIM4 Missense_Mutation p.T434K 0.33 tolerated(0.94) unknown(0) TCGA-BR-8680-01 19 14000523 14000523 C T C19orf57 Silent p.R382R 0.08 TCGA-BR-8680-01 19 14231244 14231244 G A ASF1B 3'UTR 0.36 TCGA-BR-8680-01 19 14267940 14267940 G A LPHN1 Silent p.F926F 0.28 TCGA-BR-8680-01 19 1453554 1453554 C A APC2 Missense_Mutation p.S119R 0.35 benign(0.03) TCGA-BR-8680-01 19 1466116 1466116 G A APC2 Missense_Mutation p.R939H 0.43 possibly_damaging(0.557) TCGA-BR-8680-01 19 14765862 14765862 G A EMR3 Missense_Mutation p.S170L 0.29 tolerated(0.42) benign(0.014) TCGA-BR-8680-01 19 14829800 14829800 G A ZNF333 Missense_Mutation p.R554Q 0.39 deleterious(0) possibly_damaging(0.602) TCGA-BR-8680-01 19 14951778 14951778 G T OR7A10 Missense_Mutation p.F304L 0.23 tolerated_low_confidence(0.72) benign(0.003) TCGA-BR-8680-01 19 15063790 15063790 G A SLC1A6 Silent p.V483V 0.38 TCGA-BR-8680-01 19 15072662 15072662 G T SLC1A6 Intron 0.38 TCGA-BR-8680-01 19 15083562 15083562 C T SLC1A6 Missense_Mutation p.R54H 0.33 tolerated(0.06) benign(0.438) TCGA-BR-8680-01 19 15132651 15132651 G T CCDC105 Nonsense_Mutation p.E391* 0.29 TCGA-BR-8680-01 19 15164409 15164409 C T CASP14 Silent p.F48F 0.34 TCGA-BR-8680-01 19 15198197 15198197 C T OR1I1 Silent p.F107F 0.24 TCGA-BR-8680-01 19 15226687 15226687 C T ILVBL Missense_Mutation p.E530K 0.18 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 19 15510111 15510111 A G AKAP8L Splice_Site p.X386_splice 0.20 TCGA-BR-8680-01 19 15658949 15658949 T G CYP4F22 Silent p.T389T 0.07 TCGA-BR-8680-01 19 15758136 15758136 T C CYP4F3 Splice_Site p.X175_splice 0.30 TCGA-BR-8680-01 19 15839024 15839024 G A OR10H2 Silent p.T57T 0.37 TCGA-BR-8680-01 19 15905629 15905629 C T OR10H5 Silent p.S257S 0.36 TCGA-BR-8680-01 19 15990222 15990222 C T CYP4F2 Missense_Mutation p.R444H 0.32 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 19 16045053 16045053 T C CYP4F11 Missense_Mutation p.K56E 0.40 tolerated(0.08) benign(0.082) TCGA-BR-8680-01 19 1615638 1615638 C T TCF3 Intron 0.40 TCGA-BR-8680-01 19 16240385 16240385 G T RAB8A Missense_Mutation p.D168Y 0.32 deleterious(0) probably_damaging(0.991) TCGA-BR-8680-01 19 16514555 16514555 C T EPS15L1 Missense_Mutation p.E539K 0.29 deleterious(0.01) benign(0.198) TCGA-BR-8680-01 19 16594840 16594840 G A CALR3 Silent p.S193S 0.30 TCGA-BR-8680-01 19 16601326 16601326 C T CALR3 Silent p.P83P 0.35 TCGA-BR-8680-01 19 17010303 17010303 G A CPAMD8 Missense_Mutation p.L1658F 0.21 tolerated(0.09) benign(0.16) TCGA-BR-8680-01 19 17091335 17091335 C T CPAMD8 Silent p.P566P 0.40 TCGA-BR-8680-01 19 17091474 17091474 G T CPAMD8 Missense_Mutation p.S520Y 0.34 tolerated(0.09) benign(0.275) TCGA-BR-8680-01 19 17119328 17119328 C T CPAMD8 Silent p.K229K 0.33 TCGA-BR-8680-01 19 17308628 17308628 C T MYO9B Silent p.S1358S 0.27 TCGA-BR-8680-01 19 17641676 17641676 C T FAM129C Silent p.S87S 0.31 TCGA-BR-8680-01 19 17651357 17651357 G A FAM129C Missense_Mutation p.R410H 0.41 deleterious(0.05) probably_damaging(0.985) TCGA-BR-8680-01 19 17654405 17654405 T G FAM129C Missense_Mutation p.F538V 0.44 tolerated(0.07) probably_damaging(0.999) TCGA-BR-8680-01 19 17758153 17758153 C T UNC13A Silent p.A655A 0.36 TCGA-BR-8680-01 19 17951088 17951088 C T JAK3 Missense_Mutation p.R402H 0.36 deleterious(0) possibly_damaging(0.718) TCGA-BR-8680-01 19 17955206 17955206 C A JAK3 Missense_Mutation p.E7D 0.25 tolerated_low_confidence(0.28) benign(0.015) TCGA-BR-8680-01 19 17983487 17983487 T C SLC5A5 Splice_Site p.X119_splice 0.34 TCGA-BR-8680-01 19 1800271 1800271 A G ATP8B3 Missense_Mutation p.S444P 0.24 deleterious(0) possibly_damaging(0.906) TCGA-BR-8680-01 19 18170416 18170416 G A IL12RB1 3'UTR 0.29 TCGA-BR-8680-01 19 18239715 18239715 G A MAST3 Missense_Mutation p.E364K 0.35 deleterious(0) possibly_damaging(0.59) TCGA-BR-8680-01 19 18248128 18248128 C T MAST3 Silent p.F655F 0.30 TCGA-BR-8680-01 19 18277075 18277075 C T PIK3R2 Missense_Mutation p.R508C 0.32 deleterious(0) possibly_damaging(0.519) TCGA-BR-8680-01 19 18499871 18499871 C A GDF15 3'UTR 0.60 TCGA-BR-8680-01 19 19120788 19120788 C T SUGP2 Silent p.P738P 0.28 TCGA-BR-8680-01 19 19360650 19360650 G A NCAN Missense_Mutation p.R1299H 0.38 tolerated(0.69) benign(0.001) TCGA-BR-8680-01 19 19790703 19790703 G T ZNF101 Missense_Mutation p.R302I 0.33 tolerated(0.1) benign(0.363) TCGA-BR-8680-01 19 19822037 19822037 A C ZNF14 3'UTR 0.39 TCGA-BR-8680-01 19 19905446 19905446 T G ZNF506 Missense_Mutation p.K417T 0.31 tolerated(0.24) benign(0.004) TCGA-BR-8680-01 19 20003051 20003051 G T ZNF253 Missense_Mutation p.R332I 0.15 tolerated(0.38) benign(0.027) TCGA-BR-8680-01 19 20229335 20229335 C A ZNF90 Silent p.L324L 0.30 TCGA-BR-8680-01 19 20308761 20308761 G A ZNF486 Silent p.A414A 0.42 TCGA-BR-8680-01 19 20727843 20727843 C A ZNF737 Missense_Mutation p.R389I 0.36 tolerated(0.43) benign(0.001) TCGA-BR-8680-01 19 20808104 20808104 T C ZNF626 Silent p.K193K 0.27 TCGA-BR-8680-01 19 20828209 20828209 T C ZNF626 Intron 0.27 TCGA-BR-8680-01 19 21116931 21116931 G T ZNF85 Missense_Mutation p.E35D 0.28 deleterious(0.02) possibly_damaging(0.533) TCGA-BR-8680-01 19 21132056 21132056 A G ZNF85 Missense_Mutation p.I246V 0.27 deleterious(0.01) benign(0.145) TCGA-BR-8680-01 19 21910150 21910150 A G ZNF100 Missense_Mutation p.C322R 0.28 deleterious(0) possibly_damaging(0.899) TCGA-BR-8680-01 19 21934114 21934114 T C ZNF100 Intron 0.34 TCGA-BR-8680-01 19 21992154 21992154 G T ZNF43 Missense_Mutation p.P229T 0.27 deleterious(0.02) possibly_damaging(0.701) TCGA-BR-8680-01 19 22155034 22155034 T C ZNF208 Silent p.K934K 0.24 TCGA-BR-8680-01 19 22155446 22155446 C A ZNF208 Missense_Mutation p.R797I 0.36 tolerated(0.18) benign(0.001) TCGA-BR-8680-01 19 22155637 22155637 G T ZNF208 Missense_Mutation p.F733L 0.27 tolerated(0.65) possibly_damaging(0.641) TCGA-BR-8680-01 19 22155698 22155698 C A ZNF208 Missense_Mutation p.R713I 0.28 tolerated(0.17) benign(0.031) TCGA-BR-8680-01 19 22156833 22156833 G T ZNF208 Missense_Mutation p.H335N 0.32 deleterious(0) probably_damaging(0.997) TCGA-BR-8680-01 19 22193599 22193599 C A ZNF208 5'UTR 0.25 TCGA-BR-8680-01 19 22270960 22270960 T C ZNF257 Silent p.C136C 0.31 TCGA-BR-8680-01 19 22271240 22271240 A C ZNF257 Missense_Mutation p.K230Q 0.19 deleterious(0.02) possibly_damaging(0.708) TCGA-BR-8680-01 19 22271522 22271522 G T ZNF257 Missense_Mutation p.A324S 0.12 tolerated(0.06) possibly_damaging(0.718) TCGA-BR-8680-01 19 22363281 22363281 C A ZNF676 Missense_Mutation p.R413I 0.28 tolerated(0.34) benign(0.03) TCGA-BR-8680-01 19 22364161 22364161 T G ZNF676 Missense_Mutation p.N120H 0.37 deleterious(0) possibly_damaging(0.694) TCGA-BR-8680-01 19 22575671 22575671 T G ZNF98 Missense_Mutation p.L122F 0.23 tolerated(0.13) probably_damaging(0.986) TCGA-BR-8680-01 19 22605014 22605014 G T ZNF98 Missense_Mutation p.L5I 0.33 tolerated_low_confidence(0.21) benign(0) TCGA-BR-8680-01 19 22836183 22836183 G T ZNF492 5'UTR 0.34 TCGA-BR-8680-01 19 22836210 22836210 G T ZNF492 Missense_Mutation p.E3D 0.27 deleterious(0.02) possibly_damaging(0.636) TCGA-BR-8680-01 19 22939805 22939805 G T ZNF99 3'Flank 0.37 TCGA-BR-8680-01 19 22941589 22941589 G A ZNF99 Silent p.C374C 0.33 TCGA-BR-8680-01 19 22942430 22942430 G T ZNF99 Missense_Mutation p.S94Y 0.27 tolerated(0.12) possibly_damaging(0.811) TCGA-BR-8680-01 19 23328082 23328082 C T ZNF730 Missense_Mutation p.S79F 0.33 tolerated(0.05) probably_damaging(0.963) TCGA-BR-8680-01 19 23329224 23329224 G T ZNF730 Missense_Mutation p.A460S 0.32 deleterious(0.04) probably_damaging(0.983) TCGA-BR-8680-01 19 23329638 23329638 A G ZNF730 3'UTR 0.24 TCGA-BR-8680-01 19 23541757 23541757 T C ZNF91 3'UTR 0.33 TCGA-BR-8680-01 19 23541858 23541858 T G ZNF91 3'UTR 0.29 TCGA-BR-8680-01 19 23543666 23543666 T G ZNF91 Missense_Mutation p.K705N 0.29 deleterious(0.01) probably_damaging(0.992) TCGA-BR-8680-01 19 23544521 23544521 A T ZNF91 Missense_Mutation p.N420K 0.32 tolerated(0.97) benign(0.197) TCGA-BR-8680-01 19 23545151 23545151 A G ZNF91 Silent p.C210C 0.34 TCGA-BR-8680-01 19 23545287 23545287 T G ZNF91 Missense_Mutation p.K165T 0.30 deleterious(0.05) benign(0.041) TCGA-BR-8680-01 19 23836488 23836488 C T ZNF675 Missense_Mutation p.R416K 0.31 tolerated(0.41) benign(0.057) TCGA-BR-8680-01 19 23927763 23927763 A C ZNF681 Missense_Mutation p.F197V 0.35 tolerated(0.17) possibly_damaging(0.849) TCGA-BR-8680-01 19 23927902 23927902 G T ZNF681 Silent p.I150I 0.28 TCGA-BR-8680-01 19 24097752 24097752 G A ZNF726 5'UTR 0.23 TCGA-BR-8680-01 19 24102077 24102077 G T ZNF726 Intron 0.28 TCGA-BR-8680-01 19 2413960 2413960 C T TMPRSS9 Missense_Mutation p.S472L 0.50 tolerated(0.07) benign(0.001) TCGA-BR-8680-01 19 2916112 2916112 C A ZNF57 Missense_Mutation p.S56Y 0.29 tolerated(0.1) possibly_damaging(0.902) TCGA-BR-8680-01 19 2917762 2917762 A G ZNF57 Silent p.E381E 0.32 TCGA-BR-8680-01 19 29215123 29215123 C A AC005307.3 RNA 0.24 TCGA-BR-8680-01 19 2989114 2989114 G A TLE6 Missense_Mutation p.G266R 0.39 tolerated(0.59) benign(0.007) TCGA-BR-8680-01 19 31048088 31048088 C T ZNF536 3'UTR 0.36 TCGA-BR-8680-01 19 3155824 3155824 C T GNA15 Silent p.I206I 0.33 TCGA-BR-8680-01 19 32873490 32873490 G A ZNF507 Silent p.A826A 0.29 TCGA-BR-8680-01 19 33078232 33078232 T G PDCD5 3'UTR 0.29 TCGA-BR-8680-01 19 33167820 33167820 C T RGS9BP Silent p.F217F 0.24 TCGA-BR-8680-01 19 33617545 33617545 C A GPATCH1 Missense_Mutation p.P891T 0.32 tolerated_low_confidence(0.26) unknown(0) TCGA-BR-8680-01 19 34180143 34180143 G T CHST8 5'UTR 0.26 TCGA-BR-8680-01 19 35757270 35757270 G A LSR Missense_Mutation p.A311T 0.73 deleterious(0) probably_damaging(0.998) TCGA-BR-8680-01 19 35832350 35832350 G T CD22 Nonsense_Mutation p.E538* 0.69 TCGA-BR-8680-01 19 36168723 36168723 G A UPK1A Missense_Mutation p.E220K 0.18 tolerated(0.08) benign(0.102) TCGA-BR-8680-01 19 36207046 36207046 A G ZBTB32 Missense_Mutation p.T346A 0.39 deleterious(0.02) benign(0.217) TCGA-BR-8680-01 19 36236861 36236861 G T PSENEN Missense_Mutation p.E10D 0.73 tolerated(0.58) benign(0.03) TCGA-BR-8680-01 19 36243362 36243362 A C LIN37 Missense_Mutation p.K46N 0.83 tolerated(0.05) probably_damaging(0.994) TCGA-BR-8680-01 19 36245009 36245009 G A LIN37 Missense_Mutation p.R179H 0.68 tolerated(0.06) probably_damaging(0.996) TCGA-BR-8680-01 19 36304052 36304052 G A PRODH2 Silent p.C44C 0.67 TCGA-BR-8680-01 19 36341894 36341894 C T NPHS1 Silent p.A165A 0.31 TCGA-BR-8680-01 19 36395306 36395306 T C TYROBP 3'Flank 0.56 TCGA-BR-8680-01 19 36896524 36896524 C A ZFP82 Nonsense_Mutation p.E63* 0.27 TCGA-BR-8680-01 19 37130848 37130848 G A ZNF461 Silent p.S133S 0.31 TCGA-BR-8680-01 19 37240200 37240200 C T ZNF850 Missense_Mutation p.R581Q 0.27 deleterious(0.01) probably_damaging(0.949) TCGA-BR-8680-01 19 37309846 37309846 C T ZNF790 Missense_Mutation p.R467Q 0.66 tolerated(1) benign(0.058) TCGA-BR-8680-01 19 37310341 37310341 C A ZNF790 Missense_Mutation p.R302I 0.68 tolerated(0.1) probably_damaging(0.991) TCGA-BR-8680-01 19 37368393 37368393 C T ZNF345 Missense_Mutation p.R221W 0.24 deleterious(0.01) possibly_damaging(0.821) TCGA-BR-8680-01 19 37369178 37369178 C T ZNF345 Silent p.C482C 0.31 TCGA-BR-8680-01 19 37382420 37382420 G A ZNF829 Missense_Mutation p.R506C 0.78 deleterious(0.04) benign(0.003) TCGA-BR-8680-01 19 37382971 37382971 T G ZNF829 Missense_Mutation p.E322A 0.36 deleterious(0.01) benign(0.164) TCGA-BR-8680-01 19 37399357 37399357 G A ZNF829 Missense_Mutation p.P115L 0.66 tolerated(0.77) benign(0.085) TCGA-BR-8680-01 19 37440603 37440603 A C ZNF568 Missense_Mutation p.K183T 0.69 tolerated(0.06) benign(0.004) TCGA-BR-8680-01 19 37441368 37441368 G A ZNF568 Missense_Mutation p.R438Q 0.35 deleterious(0) possibly_damaging(0.702) TCGA-BR-8680-01 19 37441536 37441536 G T ZNF568 Missense_Mutation p.R494I 0.73 deleterious(0.03) probably_damaging(0.999) TCGA-BR-8680-01 19 37676966 37676966 C A ZNF585B Missense_Mutation p.E491D 0.63 deleterious(0.02) probably_damaging(0.986) TCGA-BR-8680-01 19 37734483 37734483 C T ZNF383 Missense_Mutation p.P449S 0.33 deleterious(0.02) benign(0.185) TCGA-BR-8680-01 19 3779599 3779599 T C MATK Missense_Mutation p.N288D 0.28 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 19 37870123 37870123 G T ZNF527 Missense_Mutation p.E45D 0.65 deleterious(0.03) benign(0.371) TCGA-BR-8680-01 19 37880588 37880588 G T ZNF527 Missense_Mutation p.R546I 0.63 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 19 37903657 37903657 C T ZNF569 Missense_Mutation p.D635N 0.34 tolerated(0.1) probably_damaging(0.998) TCGA-BR-8680-01 19 37904545 37904545 C T ZNF569 Missense_Mutation p.A339T 0.33 tolerated(0.1) probably_damaging(0.982) TCGA-BR-8680-01 19 37966812 37966812 A C ZNF570 Silent p.V21V 0.20 TCGA-BR-8680-01 19 37975024 37975024 C A ZNF570 Missense_Mutation p.S167Y 0.35 deleterious(0.03) benign(0.241) TCGA-BR-8680-01 19 38056098 38056098 C A ZNF571 Missense_Mutation p.R411I 0.64 deleterious(0.02) probably_damaging(0.987) TCGA-BR-8680-01 19 38125857 38125857 C T ZFP30 3'UTR 0.35 TCGA-BR-8680-01 19 38126696 38126696 T G ZFP30 Missense_Mutation p.K249T 0.30 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 19 38229502 38229502 C A ZNF573 Missense_Mutation p.R630I 0.34 deleterious(0.02) possibly_damaging(0.54) TCGA-BR-8680-01 19 38610322 38610322 T C SIPA1L3 Silent p.L890L 0.38 TCGA-BR-8680-01 19 38874061 38874061 G A PSMD8 3'UTR 0.38 TCGA-BR-8680-01 19 38899392 38899392 T C FAM98C Missense_Mutation p.V307A 0.68 deleterious(0) possibly_damaging(0.906) TCGA-BR-8680-01 19 38959681 38959681 G A RYR1 Missense_Mutation p.D1153N 0.74 possibly_damaging(0.792) TCGA-BR-8680-01 19 39789108 39789108 C T IFNL1 Silent p.A185A 0.63 TCGA-BR-8680-01 19 39804604 39804604 T C LRFN1 Missense_Mutation p.Y458C 0.14 deleterious(0) probably_damaging(0.995) TCGA-BR-8680-01 19 39911616 39911616 G A PLEKHG2 Missense_Mutation p.R476H 0.24 tolerated_low_confidence(0.06) benign(0.082) TCGA-BR-8680-01 19 40098106 40098106 G A LGALS13 3'UTR 0.43 TCGA-BR-8680-01 19 40370238 40370238 C T FCGBP Missense_Mutation p.G4143D 0.11 probably_damaging(0.982) TCGA-BR-8680-01 19 40376715 40376715 G A FCGBP Missense_Mutation p.L3903F 0.38 possibly_damaging(0.849) TCGA-BR-8680-01 19 40392400 40392400 G A FCGBP Missense_Mutation p.L2702F 0.17 benign(0.066) TCGA-BR-8680-01 19 40392521 40392521 G T FCGBP Missense_Mutation p.F2661L 0.13 benign(0.002) TCGA-BR-8680-01 19 40521315 40521315 G T ZNF546 Missense_Mutation p.R713I 0.26 deleterious(0.01) possibly_damaging(0.671) TCGA-BR-8680-01 19 40540394 40540394 C A ZNF780B Missense_Mutation p.R791I 0.72 tolerated(0.28) probably_damaging(0.928) TCGA-BR-8680-01 19 40540950 40540950 A C ZNF780B Missense_Mutation p.F606V 0.35 tolerated(0.06) benign(0.001) TCGA-BR-8680-01 19 40541040 40541040 G A ZNF780B Nonsense_Mutation p.R576* 0.29 TCGA-BR-8680-01 19 40541891 40541891 A C ZNF780B Missense_Mutation p.L292R 0.65 deleterious(0) probably_damaging(0.977) TCGA-BR-8680-01 19 41063123 41063123 G T SPTBN4 Missense_Mutation p.Q1828H 0.40 deleterious(0) probably_damaging(0.995) TCGA-BR-8680-01 19 41597723 41597723 C A CYP2A13 Missense_Mutation p.F247L 0.36 deleterious(0.04) probably_damaging(1) TCGA-BR-8680-01 19 41631482 41631482 T G CYP2F1 Missense_Mutation p.F413V 0.34 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 19 41700500 41700500 C T CYP2S1 Missense_Mutation p.P77S 0.75 deleterious(0.01) possibly_damaging(0.568) TCGA-BR-8680-01 19 42396120 42396120 C T ARHGEF1 Silent p.L99L 0.36 TCGA-BR-8680-01 19 42806432 42806432 C T PAFAH1B3 Silent p.K10K 0.73 TCGA-BR-8680-01 19 42912401 42912401 C T LIPE Missense_Mutation p.R498H 0.33 deleterious(0.01) probably_damaging(0.996) TCGA-BR-8680-01 19 43087468 43087468 G T CEACAM8 Missense_Mutation p.S327Y 0.29 deleterious(0.02) benign(0.264) TCGA-BR-8680-01 19 4310278 4310278 G A FSD1 Silent p.K118K 0.27 TCGA-BR-8680-01 19 43233982 43233982 T C PSG3 Missense_Mutation p.I312M 0.04 tolerated(0.09) probably_damaging(0.961) TCGA-BR-8680-01 19 43349198 43349198 G A PSG10P RNA 0.28 TCGA-BR-8680-01 19 43375919 43375919 G A PSG1 Missense_Mutation p.P237S 0.68 tolerated(0.46) benign(0.016) TCGA-BR-8680-01 19 43576027 43576027 C T PSG2 Silent p.A263A 0.70 TCGA-BR-8680-01 19 43689144 43689144 C T PSG5 Missense_Mutation p.D74N 0.34 tolerated(0.1) possibly_damaging(0.825) TCGA-BR-8680-01 19 43699426 43699426 C T PSG4 Splice_Site p.X237_splice 0.68 TCGA-BR-8680-01 19 44352896 44352896 G A ZNF283 3'UTR 0.63 TCGA-BR-8680-01 19 44470846 44470846 G T ZNF221 Nonsense_Mutation p.E398* 0.34 TCGA-BR-8680-01 19 44570416 44570416 G T ZNF223 Missense_Mutation p.Q145H 0.30 deleterious(0.03) possibly_damaging(0.823) TCGA-BR-8680-01 19 44611252 44611252 G T ZNF224 Missense_Mutation p.E313D 0.63 deleterious(0.01) possibly_damaging(0.841) TCGA-BR-8680-01 19 44636406 44636406 A C ZNF225 Missense_Mutation p.K547Q 0.31 deleterious(0) possibly_damaging(0.883) TCGA-BR-8680-01 19 44681081 44681081 G T ZNF226 Nonsense_Mutation p.E556* 0.33 TCGA-BR-8680-01 19 44681178 44681178 A C ZNF226 Missense_Mutation p.K588T 0.67 tolerated(0.06) probably_damaging(1) TCGA-BR-8680-01 19 44890613 44890613 T G ZNF285 3'UTR 0.61 TCGA-BR-8680-01 19 45448716 45448716 A C APOC4 3'UTR 0.67 TCGA-BR-8680-01 19 45563839 45563839 G A CLASRP Missense_Mutation p.E273K 0.21 tolerated(0.34) possibly_damaging(0.504) TCGA-BR-8680-01 19 4557207 4557207 G A SEMA6B Missense_Mutation p.P92S 0.46 tolerated(0.22) possibly_damaging(0.777) TCGA-BR-8680-01 19 45731000 45731000 C A EXOC3L2 Missense_Mutation p.E108D 0.27 tolerated(0.09) probably_damaging(0.983) TCGA-BR-8680-01 19 45810167 45810167 G A CKM Silent p.A329A 0.63 TCGA-BR-8680-01 19 45868310 45868310 C T ERCC2 Missense_Mutation p.R156Q 0.64 tolerated(0.6) benign(0.007) TCGA-BR-8680-01 19 45998139 45998139 G T RTN2 Silent p.A68A 0.64 TCGA-BR-8680-01 19 46112866 46112866 G A EML2 3'Flank 0.62 TCGA-BR-8680-01 19 46282726 46282726 T G DMPK Missense_Mutation p.N113H 0.34 tolerated(0.12) probably_damaging(1) TCGA-BR-8680-01 19 46308102 46308102 C A RSPH6A Missense_Mutation p.S354I 0.32 deleterious(0) probably_damaging(0.936) TCGA-BR-8680-01 19 46393881 46393881 T C MYPOP Nonstop_Mutation p.*400Wext*45 0.80 TCGA-BR-8680-01 19 46417834 46417834 G T NANOS2 Missense_Mutation p.P40T 0.33 tolerated(0.06) benign(0.039) TCGA-BR-8680-01 19 46973370 46973370 G A PNMAL1 Missense_Mutation p.A308V 0.65 tolerated(0.46) possibly_damaging(0.695) TCGA-BR-8680-01 19 47910728 47910728 G A MEIS3 Silent p.C318C 0.27 TCGA-BR-8680-01 19 47986471 47986471 C A KPTN Missense_Mutation p.Q132H 0.32 deleterious(0) possibly_damaging(0.61) TCGA-BR-8680-01 19 48386971 48386971 G A SULT2A1 Missense_Mutation p.P70S 0.73 deleterious(0.02) benign(0.217) TCGA-BR-8680-01 19 48543980 48543980 G A CABP5 Silent p.F40F 0.65 TCGA-BR-8680-01 19 4859985 4859985 C T PLIN3 Missense_Mutation p.D40N 0.10 tolerated(0.5) benign(0.159) TCGA-BR-8680-01 19 48789668 48789668 C A ZNF114 Missense_Mutation p.H263N 0.66 tolerated(0.37) benign(0.107) TCGA-BR-8680-01 19 4891415 4891415 G A ARRDC5 Silent p.F224F 0.26 TCGA-BR-8680-01 19 48965373 48965373 T C KCNJ14 Missense_Mutation p.V131A 0.58 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 19 48967513 48967513 G A KCNJ14 Missense_Mutation p.D264N 0.29 deleterious(0.01) probably_damaging(1) TCGA-BR-8680-01 19 49245472 49245472 A C IZUMO1 Missense_Mutation p.F198L 0.70 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 19 49364675 49364675 G A PLEKHA4 Missense_Mutation p.R117W 0.26 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 19 49368824 49368824 C A PLEKHA4 Missense_Mutation p.R43I 0.31 deleterious(0) probably_damaging(0.996) TCGA-BR-8680-01 19 49925696 49925696 C A PTH2 3'UTR 0.38 TCGA-BR-8680-01 19 50251693 50251693 C A TSKS Missense_Mutation p.D145Y 0.31 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 19 50399224 50399224 C T IL4I1 Missense_Mutation p.E56K 0.28 tolerated(0.46) benign(0.021) TCGA-BR-8680-01 19 50549532 50549532 G A ZNF473 Missense_Mutation p.R611K 0.34 tolerated(0.26) benign(0.067) TCGA-BR-8680-01 19 50550117 50550117 G T ZNF473 Missense_Mutation p.R806I 0.34 deleterious(0) benign(0) TCGA-BR-8680-01 19 50720889 50720889 C T MYH14 Silent p.F141F 0.28 TCGA-BR-8680-01 19 50868887 50868887 A G NAPSA 5'UTR 0.50 TCGA-BR-8680-01 19 50926154 50926154 G A SPIB Missense_Mutation p.A67T 0.76 tolerated(0.77) benign(0.001) TCGA-BR-8680-01 19 50951486 50951486 A G MYBPC2 Silent p.K437K 0.31 TCGA-BR-8680-01 19 51022417 51022417 G A LRRC4B Missense_Mutation p.R185W 0.38 deleterious(0) probably_damaging(0.998) TCGA-BR-8680-01 19 51361284 51361284 G A KLK3 Splice_Site p.X69_splice 0.42 TCGA-BR-8680-01 19 51559797 51559797 T C KLK13 3'UTR 0.30 TCGA-BR-8680-01 19 51647913 51647913 G A SIGLEC7 Silent p.T228T 0.24 TCGA-BR-8680-01 19 51919253 51919253 A C SIGLEC10 Missense_Mutation p.L308R 0.70 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 19 52000207 52000207 G A SIGLEC12 Missense_Mutation p.S509L 0.65 tolerated(0.15) possibly_damaging(0.487) TCGA-BR-8680-01 19 52130481 52130481 C T SIGLEC5 Missense_Mutation p.G435R 0.25 tolerated(0.08) benign(0.057) TCGA-BR-8680-01 19 52249296 52249296 C T FPR1 Missense_Mutation p.A318T 0.34 tolerated(0.17) benign(0.015) TCGA-BR-8680-01 19 52250104 52250104 G A FPR1 Silent p.I48I 0.74 TCGA-BR-8680-01 19 52376895 52376895 T C ZNF577 Silent p.R116R 0.59 TCGA-BR-8680-01 19 52447723 52447723 G A ZNF613 Missense_Mutation p.R196Q 0.67 tolerated(0.17) benign(0.022) TCGA-BR-8680-01 19 52537131 52537131 C A ZNF432 Nonsense_Mutation p.E601* 0.29 TCGA-BR-8680-01 19 52568865 52568865 C A ZNF841 Missense_Mutation p.R757I 0.70 tolerated(0.11) possibly_damaging(0.892) TCGA-BR-8680-01 19 52570041 52570041 C A ZNF841 Missense_Mutation p.R365I 0.36 tolerated(0.09) possibly_damaging(0.749) TCGA-BR-8680-01 19 52618189 52618189 T G ZNF616 Missense_Mutation p.K743T 0.69 deleterious(0) probably_damaging(0.998) TCGA-BR-8680-01 19 52619990 52619990 T G ZNF616 Missense_Mutation p.N143H 0.66 deleterious(0.03) benign(0.289) TCGA-BR-8680-01 19 52716217 52716217 C T PPP2R1A Missense_Mutation p.R221W 0.71 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 19 52785394 52785394 G T ZNF766 Nonsense_Mutation p.E17* 0.65 TCGA-BR-8680-01 19 52825331 52825331 A G ZNF480 Silent p.R276R 0.69 TCGA-BR-8680-01 19 52856965 52856965 G A ZNF610 Missense_Mutation p.E32K 0.76 deleterious(0.04) probably_damaging(0.99) TCGA-BR-8680-01 19 53013860 53013860 T C ZNF578 Missense_Mutation p.S76P 0.58 tolerated(1) probably_damaging(0.994) TCGA-BR-8680-01 19 53014974 53014974 G C ZNF578 Missense_Mutation p.R447T 0.70 tolerated(0.07) probably_damaging(0.982) TCGA-BR-8680-01 19 53046520 53046520 A C ZNF808 Intron 0.70 TCGA-BR-8680-01 19 53086082 53086082 A C ZNF701 Missense_Mutation p.Y323S 0.33 tolerated(0.34) probably_damaging(0.996) TCGA-BR-8680-01 19 53086702 53086702 A C ZNF701 Missense_Mutation p.K530Q 0.67 deleterious(0.02) probably_damaging(0.98) TCGA-BR-8680-01 19 53453915 53453915 A G ZNF816 Silent p.C371C 0.31 TCGA-BR-8680-01 19 53454606 53454606 C T ZNF816 Missense_Mutation p.R141Q 0.39 tolerated(1) benign(0.007) TCGA-BR-8680-01 19 53644231 53644231 C T ZNF347 Missense_Mutation p.R618Q 0.67 tolerated(0.06) benign(0.39) TCGA-BR-8680-01 19 53645327 53645327 G A ZNF347 Nonsense_Mutation p.Q253* 0.68 TCGA-BR-8680-01 19 53668755 53668755 G A ZNF665 Missense_Mutation p.R330C 0.75 tolerated(0.09) benign(0.094) TCGA-BR-8680-01 19 53668977 53668977 G T ZNF665 Missense_Mutation p.H256N 0.32 deleterious(0) probably_damaging(0.992) TCGA-BR-8680-01 19 53793036 53793036 C T BIRC8 Missense_Mutation p.A198T 0.70 tolerated(0.09) benign(0.21) TCGA-BR-8680-01 19 53793699 53793699 G A BIRC8 5'UTR 0.33 TCGA-BR-8680-01 19 53857410 53857410 G A ZNF845 3'UTR 0.39 TCGA-BR-8680-01 19 53958094 53958094 A G ZNF761 RNA 0.59 TCGA-BR-8680-01 19 53994839 53994839 T G ZNF813 Missense_Mutation p.N451K 0.67 tolerated(1) benign(0.002) TCGA-BR-8680-01 19 54194135 54194135 C A MIR520A RNA 0.33 TCGA-BR-8680-01 19 54444771 54444771 G A CACNG7 Missense_Mutation p.D158N 0.36 deleterious(0.02) probably_damaging(0.993) TCGA-BR-8680-01 19 54744915 54744915 G A LILRA6 Silent p.V249V 0.35 TCGA-BR-8680-01 19 54759153 54759153 G A LILRB5 Silent p.I316I 0.07 TCGA-BR-8680-01 19 54760832 54760832 A G LILRB5 Missense_Mutation p.V21A 0.24 tolerated(0.1) benign(0.202) TCGA-BR-8680-01 19 54782124 54782124 G A LILRB2 Silent p.L416L 0.68 TCGA-BR-8680-01 19 54962550 54962550 G A LENG8 Missense_Mutation p.S10N 0.26 tolerated_low_confidence(0.22) benign(0.001) TCGA-BR-8680-01 19 55146726 55146726 G A LILRB1 Missense_Mutation p.D527N 0.68 tolerated(0.24) benign(0.008) TCGA-BR-8680-01 19 55176585 55176585 C T LILRB4 Silent p.G237G 0.53 TCGA-BR-8680-01 19 55301703 55301703 C T CTB-61M7.1 RNA 0.24 TCGA-BR-8680-01 19 55331352 55331352 C A KIR3DL1 Missense_Mutation p.F180L 0.35 deleterious(0.02) probably_damaging(0.96) TCGA-BR-8680-01 19 55341405 55341405 G A KIR3DL1 Silent p.E376E 0.66 TCGA-BR-8680-01 19 55363593 55363593 T G KIR3DL2 Missense_Mutation p.F71V 0.33 deleterious(0.04) benign(0.256) TCGA-BR-8680-01 19 55556347 55556347 C T RDH13 3'UTR 0.59 TCGA-BR-8680-01 19 55607700 55607700 G A PPP1R12C Missense_Mutation p.R319W 0.38 deleterious(0) probably_damaging(0.968) TCGA-BR-8680-01 19 55652593 55652593 C A TNNT1 Missense_Mutation p.K90N 0.34 deleterious(0) probably_damaging(0.986) TCGA-BR-8680-01 19 55686654 55686654 G A SYT5 Silent p.F198F 0.73 TCGA-BR-8680-01 19 55805594 55805594 T G BRSK1 Nonsense_Mutation p.Y196* 0.33 TCGA-BR-8680-01 19 55828275 55828275 G A TMEM150B Silent p.N128N 0.30 TCGA-BR-8680-01 19 56244828 56244828 G T NLRP9 Missense_Mutation p.F123L 0.73 tolerated(0.2) probably_damaging(0.997) TCGA-BR-8680-01 19 56296968 56296968 A C NLRP11 3'UTR 0.36 TCGA-BR-8680-01 19 56321612 56321612 G A NLRP11 Missense_Mutation p.R122C 0.28 tolerated(0.1) benign(0) TCGA-BR-8680-01 19 56407479 56407479 C T NLRP13 Silent p.A988A 0.64 TCGA-BR-8680-01 19 56423490 56423490 C A NLRP13 Nonsense_Mutation p.E565* 0.66 TCGA-BR-8680-01 19 56459552 56459552 G A NLRP8 Missense_Mutation p.R95Q 0.42 tolerated(0.22) benign(0.234) TCGA-BR-8680-01 19 56467001 56467001 G A NLRP8 Missense_Mutation p.R526K 0.65 tolerated(0.1) probably_damaging(0.991) TCGA-BR-8680-01 19 56703252 56703252 G T ZSCAN5B Silent p.I185I 0.37 TCGA-BR-8680-01 19 56895105 56895105 A C ZNF582 3'UTR 0.20 TCGA-BR-8680-01 19 56935142 56935142 G T ZNF583 Missense_Mutation p.R372I 0.34 deleterious(0) probably_damaging(0.997) TCGA-BR-8680-01 19 56953546 56953546 T G ZNF667 Missense_Mutation p.K273T 0.35 tolerated(0.08) benign(0.002) TCGA-BR-8680-01 19 56973782 56973782 G T ZNF667 5'UTR 0.09 TCGA-BR-8680-01 19 57059234 57059234 G A ZFP28 Nonsense_Mutation p.W162* 0.33 TCGA-BR-8680-01 19 57088137 57088137 G T ZNF470 Nonsense_Mutation p.E114* 0.41 TCGA-BR-8680-01 19 57089047 57089047 G T ZNF470 Missense_Mutation p.R417I 0.14 deleterious(0) probably_damaging(0.988) TCGA-BR-8680-01 19 57089613 57089613 G A ZNF470 Missense_Mutation p.A606T 0.36 deleterious(0.03) benign(0.276) TCGA-BR-8680-01 19 57175095 57175095 C T ZNF835 Missense_Mutation p.R491Q 0.30 tolerated(0.97) benign(0.055) TCGA-BR-8680-01 19 57301310 57301310 G A ZIM2 Missense_Mutation p.A136V 0.50 tolerated(0.07) benign(0.118) TCGA-BR-8680-01 19 57329140 57329140 C A PEG3 Missense_Mutation p.R279I 0.76 deleterious(0) probably_damaging(0.99) TCGA-BR-8680-01 19 57641212 57641212 A C USP29 Missense_Mutation p.K390T 0.37 tolerated(0.07) possibly_damaging(0.469) TCGA-BR-8680-01 19 57765821 57765821 G A ZNF805 Missense_Mutation p.G545E 0.27 tolerated(0.15) probably_damaging(0.965) TCGA-BR-8680-01 19 57765835 57765835 C T ZNF805 Missense_Mutation p.R550C 0.64 tolerated(0.13) benign(0.135) TCGA-BR-8680-01 19 57766130 57766130 G A ZNF805 3'Flank 0.50 TCGA-BR-8680-01 19 57802298 57802298 C T ZNF460 Missense_Mutation p.A130V 0.34 deleterious(0.03) benign(0.011) TCGA-BR-8680-01 19 57869316 57869316 T C ZNF304 3'UTR 0.21 TCGA-BR-8680-01 19 57932413 57932413 G T ZNF17 Missense_Mutation p.R518I 0.66 deleterious(0.02) benign(0.245) TCGA-BR-8680-01 19 57956643 57956643 G A ZNF749 Silent p.S709S 0.37 TCGA-BR-8680-01 19 58004329 58004329 A C ZNF419 Missense_Mutation p.K136T 0.61 deleterious(0.04) possibly_damaging(0.796) TCGA-BR-8680-01 19 58005526 58005526 C A ZNF419 3'UTR 0.28 TCGA-BR-8680-01 19 58018216 58018216 C A ZNF773 Missense_Mutation p.D251E 0.47 tolerated(1) benign(0.001) TCGA-BR-8680-01 19 58102074 58102074 G A ZIK1 Missense_Mutation p.E299K 0.35 deleterious(0.03) possibly_damaging(0.683) TCGA-BR-8680-01 19 58102747 58102747 A G ZIK1 3'UTR 0.36 TCGA-BR-8680-01 19 58115765 58115765 G A ZNF530 Missense_Mutation p.A51T 0.32 tolerated(1) benign(0.129) TCGA-BR-8680-01 19 58187817 58187817 G A ZSCAN4 Missense_Mutation p.A102T 0.69 deleterious(0.03) possibly_damaging(0.468) TCGA-BR-8680-01 19 58232204 58232204 C T ZNF671 Missense_Mutation p.R417Q 0.68 deleterious(0.01) probably_damaging(0.998) TCGA-BR-8680-01 19 58234635 58234635 C A ZNF671 Missense_Mutation p.R71I 0.67 deleterious(0) probably_damaging(0.973) TCGA-BR-8680-01 19 58326023 58326023 T G ZNF552 Intron 0.41 TCGA-BR-8680-01 19 58386057 58386057 C T ZNF814 Missense_Mutation p.R234K 0.40 tolerated(0.46) benign(0.072) TCGA-BR-8680-01 19 58438323 58438323 C T ZNF418 Missense_Mutation p.R409Q 0.33 tolerated(0.72) benign(0.001) TCGA-BR-8680-01 19 58489988 58489988 C A ZNF606 Missense_Mutation p.R687I 0.40 deleterious(0) probably_damaging(0.998) TCGA-BR-8680-01 19 58490033 58490033 C A ZNF606 Missense_Mutation p.R672I 0.78 deleterious(0) probably_damaging(0.998) TCGA-BR-8680-01 19 58579936 58579936 C T ZNF135 3'UTR 0.31 TCGA-BR-8680-01 19 58601494 58601494 G T ZSCAN18 Missense_Mutation p.F103L 0.67 deleterious(0) possibly_damaging(0.904) TCGA-BR-8680-01 19 58773467 58773467 A G ZNF544 Missense_Mutation p.K499E 0.72 deleterious(0) probably_damaging(0.99) TCGA-BR-8680-01 19 58864821 58864821 C T A1BG 5'UTR 0.85 TCGA-BR-8680-01 19 58944990 58944990 G A ZNF132 Silent p.F607F 0.69 TCGA-BR-8680-01 19 58945795 58945795 C A ZNF132 Missense_Mutation p.R339I 0.73 deleterious(0) probably_damaging(0.964) TCGA-BR-8680-01 19 5917945 5917945 C T RANBP3 Missense_Mutation p.R507H 0.36 deleterious(0.01) benign(0.303) TCGA-BR-8680-01 19 5997113 5997113 G A RFX2 Silent p.V657V 0.40 TCGA-BR-8680-01 19 6016224 6016224 G T RFX2 Missense_Mutation p.S219Y 0.34 deleterious(0) probably_damaging(0.992) TCGA-BR-8680-01 19 603624 603624 A G HCN2 Missense_Mutation p.D238G 0.32 deleterious(0) benign(0.098) TCGA-BR-8680-01 19 6165951 6165951 G A ACSBG2 Silent p.A221A 0.31 TCGA-BR-8680-01 19 6677886 6677886 G A C3 3'UTR 0.35 TCGA-BR-8680-01 19 6684608 6684608 G A C3 Silent p.F1361F 0.34 TCGA-BR-8680-01 19 6707489 6707489 G A C3 Nonsense_Mutation p.R679* 0.36 TCGA-BR-8680-01 19 6711129 6711129 C A C3 Missense_Mutation p.G450C 0.35 deleterious(0.02) possibly_damaging(0.687) TCGA-BR-8680-01 19 6712386 6712386 G A C3 Missense_Mutation p.A384V 0.22 deleterious(0) possibly_damaging(0.762) TCGA-BR-8680-01 19 6904062 6904062 G A EMR1 Missense_Mutation p.R273H 0.34 tolerated(0.58) benign(0.003) TCGA-BR-8680-01 19 6908736 6908736 G A EMR1 Missense_Mutation p.V359I 0.23 tolerated(0.69) benign(0.004) TCGA-BR-8680-01 19 7081448 7081448 C A ZNF557 Missense_Mutation p.L109I 0.35 tolerated(0.19) possibly_damaging(0.801) TCGA-BR-8680-01 19 7550752 7550752 T C PEX11G Missense_Mutation p.Y74C 0.29 deleterious(0) probably_damaging(0.99) TCGA-BR-8680-01 19 7687232 7687232 G A XAB2 Silent p.F534F 0.32 TCGA-BR-8680-01 19 7689248 7689248 G A XAB2 Silent p.F302F 0.34 TCGA-BR-8680-01 19 7693137 7693137 G T XAB2 Missense_Mutation p.F33L 0.36 tolerated(0.29) benign(0.009) TCGA-BR-8680-01 19 7807863 7807863 G T CD209 3'UTR 0.07 TCGA-BR-8680-01 19 7831062 7831062 T G CLEC4M Nonsense_Mutation p.Y251* 0.38 TCGA-BR-8680-01 19 7999114 7999114 C T TIMM44 Missense_Mutation p.E135K 0.36 deleterious(0) benign(0.027) TCGA-BR-8680-01 19 8161429 8161429 G A FBN3 Missense_Mutation p.P1813L 0.32 deleterious(0.01) probably_damaging(0.957) TCGA-BR-8680-01 19 8196634 8196634 G A FBN3 Silent p.C598C 0.44 TCGA-BR-8680-01 19 8612995 8612995 G A MYO1F Silent p.F398F 0.33 TCGA-BR-8680-01 19 8841415 8841415 G A OR2Z1 Missense_Mutation p.A9T 0.38 tolerated(0.91) benign(0.001) TCGA-BR-8680-01 19 8953986 8953986 T C MBD3L1 3'UTR 0.33 TCGA-BR-8680-01 19 8971791 8971791 C T MUC16 Silent p.L14267L 0.08 TCGA-BR-8680-01 19 9010990 9010990 G A MUC16 Silent p.S12976S 0.30 TCGA-BR-8680-01 19 9014190 9014190 T G MUC16 Missense_Mutation p.T12820P 0.33 possibly_damaging(0.675) TCGA-BR-8680-01 19 9024886 9024886 T C MUC16 Missense_Mutation p.T12326A 0.33 benign(0.145) TCGA-BR-8680-01 19 9028387 9028387 C A MUC16 Missense_Mutation p.K12135N 0.33 benign(0.066) TCGA-BR-8680-01 19 9045784 9045784 C A MUC16 Missense_Mutation p.E11949D 0.26 benign(0.016) TCGA-BR-8680-01 19 9046149 9046149 T C MUC16 Missense_Mutation p.T11828A 0.20 benign(0.014) TCGA-BR-8680-01 19 9049699 9049699 G T MUC16 Silent p.I10644I 0.33 TCGA-BR-8680-01 19 9056340 9056340 C T MUC16 Missense_Mutation p.S10369N 0.31 benign(0.016) TCGA-BR-8680-01 19 9056704 9056704 C T MUC16 Missense_Mutation p.E10248K 0.42 benign(0.007) TCGA-BR-8680-01 19 9058293 9058293 G T MUC16 Missense_Mutation p.P9718H 0.28 unknown(0) TCGA-BR-8680-01 19 9062990 9062990 T G MUC16 Missense_Mutation p.E8152D 0.35 unknown(0) TCGA-BR-8680-01 19 9067439 9067439 G A MUC16 Silent p.I6669I 0.27 TCGA-BR-8680-01 19 9068735 9068735 A C MUC16 Silent p.T6237T 0.39 TCGA-BR-8680-01 19 9068878 9068878 C A MUC16 Missense_Mutation p.D6190Y 0.32 unknown(0) TCGA-BR-8680-01 19 9069874 9069874 C A MUC16 Nonsense_Mutation p.E5858* 0.42 TCGA-BR-8680-01 19 9070332 9070332 G A MUC16 Missense_Mutation p.A5705V 0.31 unknown(0) TCGA-BR-8680-01 19 9084370 9084370 T C MUC16 Missense_Mutation p.D2482G 0.35 unknown(0) TCGA-BR-8680-01 19 9086216 9086216 T C MUC16 Missense_Mutation p.T1867A 0.25 unknown(0) TCGA-BR-8680-01 19 9226198 9226198 A G OR7G1 Missense_Mutation p.I81T 0.25 deleterious(0.01) benign(0.009) TCGA-BR-8680-01 19 9226251 9226251 G T OR7G1 Silent p.L63L 0.33 TCGA-BR-8680-01 19 9296766 9296766 C T OR7D2 Silent p.F103F 0.32 TCGA-BR-8680-01 19 9362082 9362082 T G OR7E24 Missense_Mutation p.F121L 0.20 tolerated(0.64) benign(0.008) TCGA-BR-8680-01 19 9362171 9362171 G A OR7E24 Missense_Mutation p.R151Q 0.43 tolerated(0.59) benign(0.001) TCGA-BR-8680-01 19 9406606 9406606 C T ZNF699 Missense_Mutation p.E492K 0.38 tolerated(0.87) benign(0.327) TCGA-BR-8680-01 19 9407394 9407394 C A ZNF699 Missense_Mutation p.G229V 0.31 deleterious(0.01) probably_damaging(1) TCGA-BR-8680-01 19 9452436 9452436 C T ZNF559 Silent p.H103H 0.31 TCGA-BR-8680-01 19 9577259 9577259 T G ZNF560 Missense_Mutation p.K788N 0.34 deleterious(0.01) benign(0.04) TCGA-BR-8680-01 19 9577542 9577542 C T ZNF560 Missense_Mutation p.R694Q 0.34 tolerated(0.43) possibly_damaging(0.602) TCGA-BR-8680-01 19 9577768 9577768 A C ZNF560 Missense_Mutation p.L619V 0.31 tolerated(0.88) possibly_damaging(0.694) TCGA-BR-8680-01 19 9764135 9764135 C A ZNF562 Missense_Mutation p.K257N 0.34 deleterious(0.02) possibly_damaging(0.663) TCGA-BR-8680-01 19 9800800 9800800 T G ZNF812 3'UTR 0.53 TCGA-BR-8680-01 19 9868330 9868330 C A ZNF846 Nonsense_Mutation p.E475* 0.35 TCGA-BR-8680-01 19 9869139 9869139 C A ZNF846 Missense_Mutation p.R205I 0.06 deleterious(0.01) possibly_damaging(0.898) TCGA-BR-8680-01 1 100316404 100316404 A C AGL 5'UTR 0.41 TCGA-BR-8680-01 1 100380956 100380956 C T AGL Silent p.L1391L 0.36 TCGA-BR-8680-01 1 100533605 100533605 G A HIAT1 Missense_Mutation p.D187N 0.31 tolerated(0.06) benign(0.012) TCGA-BR-8680-01 1 100587965 100587965 A G SASS6 Silent p.C94C 0.31 TCGA-BR-8680-01 1 100983996 100983996 A C CDC14A 3'UTR 0.25 TCGA-BR-8680-01 1 101198116 101198116 G A VCAM1 Silent p.Q556Q 0.47 TCGA-BR-8680-01 1 101203687 101203687 A C VCAM1 Missense_Mutation p.N690H 0.41 deleterious(0.03) benign(0.013) TCGA-BR-8680-01 1 101361884 101361884 C T SLC30A7 Silent p.I22I 0.37 TCGA-BR-8680-01 1 101362221 101362221 G A SLC30A7 Missense_Mutation p.S59N 0.39 deleterious(0) benign(0.217) TCGA-BR-8680-01 1 10240076 10240076 C T UBE4B 3'UTR 0.34 TCGA-BR-8680-01 1 103345388 103345388 T G COL11A1 Missense_Mutation p.N1709H 0.28 unknown(0) TCGA-BR-8680-01 1 103355106 103355106 A C COL11A1 Missense_Mutation p.L1457V 0.34 unknown(0) TCGA-BR-8680-01 1 103412431 103412431 C T COL11A1 Missense_Mutation p.G1084S 0.13 unknown(0) TCGA-BR-8680-01 1 10423363 10423363 G A KIF1B Missense_Mutation p.E1397K 0.37 deleterious(0) possibly_damaging(0.469) TCGA-BR-8680-01 1 10460491 10460491 C A PGD Missense_Mutation p.F42L 0.35 deleterious(0.03) probably_damaging(1) TCGA-BR-8680-01 1 10473290 10473290 G A PGD Missense_Mutation p.V276I 0.27 tolerated(0.7) benign(0.003) TCGA-BR-8680-01 1 10502566 10502566 A C APITD1 Intron 0.43 TCGA-BR-8680-01 1 10687419 10687419 C T PEX14 Missense_Mutation p.R226W 0.26 deleterious(0) probably_damaging(0.939) TCGA-BR-8680-01 1 107867344 107867344 C T NTNG1 Silent p.F229F 0.30 TCGA-BR-8680-01 1 108298072 108298072 A C VAV3 Missense_Mutation p.F384V 0.29 tolerated(0.12) possibly_damaging(0.591) TCGA-BR-8680-01 1 108728461 108728461 T G SLC25A24 Missense_Mutation p.K100T 0.17 tolerated(0.17) benign(0.122) TCGA-BR-8680-01 1 109191357 109191357 T G HENMT1 Missense_Mutation p.K338T 0.41 tolerated(0.47) benign(0.027) TCGA-BR-8680-01 1 109270512 109270512 C T FNDC7 Silent p.A398A 0.30 TCGA-BR-8680-01 1 109373197 109373197 G A AKNAD1 Missense_Mutation p.R608C 0.28 tolerated(0.21) benign(0.004) TCGA-BR-8680-01 1 109440141 109440141 G A GPSM2 Silent p.A102A 0.23 TCGA-BR-8680-01 1 109445747 109445747 G T GPSM2 Splice_Site p.X318_splice 0.31 TCGA-BR-8680-01 1 109607124 109607124 T G TAF13 3'UTR 0.27 TCGA-BR-8680-01 1 109742851 109742851 G T KIAA1324 Missense_Mutation p.K933N 0.26 deleterious(0) probably_damaging(0.937) TCGA-BR-8680-01 1 109806711 109806711 C T CELSR2 Silent p.G1671G 0.34 TCGA-BR-8680-01 1 109808788 109808788 C T CELSR2 Silent p.F1991F 0.33 TCGA-BR-8680-01 1 109957887 109957887 C T PSMA5 Silent p.E65E 0.27 TCGA-BR-8680-01 1 110116549 110116549 G A GNAI3 Missense_Mutation p.E65K 0.28 deleterious(0) benign(0.115) TCGA-BR-8680-01 1 110301280 110301280 C T EPS8L3 Missense_Mutation p.R157Q 0.18 tolerated(0.37) benign(0.005) TCGA-BR-8680-01 1 110884015 110884015 G A RBM15 Missense_Mutation p.R663Q 0.43 deleterious(0.03) probably_damaging(0.992) TCGA-BR-8680-01 1 111060927 111060927 G T KCNA10 Silent p.I161I 0.25 TCGA-BR-8680-01 1 111216495 111216495 G A KCNA3 Missense_Mutation p.R313W 0.44 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 1 111217087 111217087 G A KCNA3 Silent p.F115F 0.34 TCGA-BR-8680-01 1 111217183 111217183 G A KCNA3 Silent p.C83C 0.48 TCGA-BR-8680-01 1 111440442 111440442 G A CD53 Silent p.A172A 0.28 TCGA-BR-8680-01 1 111492561 111492561 C T LRIF1 Missense_Mutation p.G594E 0.35 tolerated(1) probably_damaging(0.988) TCGA-BR-8680-01 1 111661436 111661436 A G DRAM2 Silent p.R228R 0.35 TCGA-BR-8680-01 1 11169375 11169375 A C MTOR Missense_Mutation p.I2500M 0.30 deleterious(0) probably_damaging(0.966) TCGA-BR-8680-01 1 111889538 111889538 C T PIFO Missense_Mutation p.A9V 0.29 tolerated(0.44) benign(0.002) TCGA-BR-8680-01 1 112304989 112304989 A G DDX20 Intron 0.21 TCGA-BR-8680-01 1 11298651 11298651 G A MTOR Missense_Mutation p.R604C 0.32 deleterious(0) possibly_damaging(0.53) TCGA-BR-8680-01 1 113000077 113000077 C T CTTNBP2NL 3'UTR 0.32 TCGA-BR-8680-01 1 113638635 113638635 G A LRIG2 Missense_Mutation p.E315K 0.31 deleterious(0.04) benign(0.026) TCGA-BR-8680-01 1 114128214 114128214 C T MAGI3 Silent p.N253N 0.29 TCGA-BR-8680-01 1 114246728 114246728 G A PHTF1 Missense_Mutation p.S622L 0.32 tolerated(0.33) benign(0.3) TCGA-BR-8680-01 1 114438555 114438555 T C AP4B1 Missense_Mutation p.D539G 0.34 deleterious(0.05) benign(0.027) TCGA-BR-8680-01 1 114454281 114454281 C T DCLRE1B Missense_Mutation p.S356F 0.30 deleterious(0) possibly_damaging(0.778) TCGA-BR-8680-01 1 114682360 114682360 G A SYT6 Missense_Mutation p.A45V 0.31 deleterious(0.01) benign(0.2) TCGA-BR-8680-01 1 114964188 114964188 C T TRIM33 Missense_Mutation p.S644N 0.36 deleterious(0.02) benign(0.142) TCGA-BR-8680-01 1 114976274 114976274 A C TRIM33 Missense_Mutation p.N335K 0.39 tolerated(1) benign(0.366) TCGA-BR-8680-01 1 115006983 115006983 C T TRIM33 Missense_Mutation p.R185H 0.52 tolerated(0.57) benign(0.028) TCGA-BR-8680-01 1 115130017 115130017 G A DENND2C Missense_Mutation p.R916W 0.36 deleterious(0) probably_damaging(0.998) TCGA-BR-8680-01 1 115168177 115168177 G T DENND2C Missense_Mutation p.F143L 0.38 tolerated(0.1) benign(0.033) TCGA-BR-8680-01 1 115168398 115168398 T G DENND2C Missense_Mutation p.N70H 0.35 deleterious(0.04) benign(0.139) TCGA-BR-8680-01 1 115168534 115168534 T G DENND2C Missense_Mutation p.K24N 0.33 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 1 115216304 115216304 C T AMPD1 Missense_Mutation p.E714K 0.48 deleterious(0) probably_damaging(0.988) TCGA-BR-8680-01 1 115218219 115218219 C A AMPD1 Missense_Mutation p.K570N 0.33 tolerated(0.23) benign(0.029) TCGA-BR-8680-01 1 115226903 115226903 A C AMPD1 Missense_Mutation p.F188C 0.08 tolerated(0.14) possibly_damaging(0.566) TCGA-BR-8680-01 1 115428199 115428199 T C SYCP1 Silent p.H318H 0.32 TCGA-BR-8680-01 1 115576140 115576140 A G TSHB Missense_Mutation p.T53A 0.33 deleterious(0.01) probably_damaging(0.967) TCGA-BR-8680-01 1 11580781 11580781 C T PTCHD2 Silent p.F746F 0.35 TCGA-BR-8680-01 1 11586750 11586750 G A PTCHD2 Missense_Mutation p.A886T 0.37 tolerated_low_confidence(0.06) benign(0.033) TCGA-BR-8680-01 1 116941321 116941321 G A ATP1A1 Missense_Mutation p.G735R 0.31 deleterious(0) probably_damaging(0.996) TCGA-BR-8680-01 1 117560012 117560012 A C CD101 Missense_Mutation p.E510A 0.47 deleterious(0.02) benign(0.426) TCGA-BR-8680-01 1 117568169 117568169 A C CD101 Missense_Mutation p.N823H 0.30 deleterious(0.01) possibly_damaging(0.516) TCGA-BR-8680-01 1 117617849 117617849 G A TTF2 Missense_Mutation p.D215N 0.36 tolerated(1) benign(0) TCGA-BR-8680-01 1 117631460 117631460 G A TTF2 Missense_Mutation p.R733Q 0.43 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 1 117632771 117632771 A G TTF2 Missense_Mutation p.T813A 0.28 deleterious(0) probably_damaging(0.973) TCGA-BR-8680-01 1 117659354 117659354 G A TRIM45 Silent p.A412A 0.33 TCGA-BR-8680-01 1 11772432 11772432 G A DRAXIN Missense_Mutation p.E265K 0.31 tolerated(0.46) benign(0.147) TCGA-BR-8680-01 1 117910770 117910770 G T MAN1A2 5'UTR 0.32 TCGA-BR-8680-01 1 117944919 117944919 G A MAN1A2 Silent p.Q138Q 0.28 TCGA-BR-8680-01 1 118065574 118065574 C T MAN1A2 Nonsense_Mutation p.R641* 0.34 TCGA-BR-8680-01 1 11851348 11851348 C T MTHFR Silent p.P556P 0.29 TCGA-BR-8680-01 1 118514668 118514668 C A SPAG17 Silent p.V2048V 0.28 TCGA-BR-8680-01 1 118583459 118583459 G A SPAG17 Silent p.H1020H 0.11 TCGA-BR-8680-01 1 118616546 118616546 C A SPAG17 Missense_Mutation p.K772N 0.38 deleterious(0) probably_damaging(0.992) TCGA-BR-8680-01 1 119575586 119575586 T G WARS2 Missense_Mutation p.E344A 0.24 tolerated(0.14) probably_damaging(0.938) TCGA-BR-8680-01 1 119927408 119927408 C T HAO2 Missense_Mutation p.A98V 0.36 deleterious(0.04) possibly_damaging(0.485) TCGA-BR-8680-01 1 120056677 120056677 C T HSD3B1 Silent p.G177G 0.40 TCGA-BR-8680-01 1 12024810 12024810 G A PLOD1 Missense_Mutation p.D480N 0.35 deleterious(0.01) possibly_damaging(0.834) TCGA-BR-8680-01 1 120298174 120298174 C A HMGCS2 Missense_Mutation p.A355S 0.27 deleterious(0.03) probably_damaging(0.999) TCGA-BR-8680-01 1 120480508 120480508 G A NOTCH2 Silent p.V1103V 0.28 TCGA-BR-8680-01 1 12328891 12328891 A C VPS13D Missense_Mutation p.K644Q 0.39 probably_damaging(0.959) TCGA-BR-8680-01 1 12337735 12337735 G T VPS13D Missense_Mutation p.D1364Y 0.38 benign(0.24) TCGA-BR-8680-01 1 12395786 12395786 C T VPS13D Missense_Mutation p.S2818L 0.31 benign(0.026) TCGA-BR-8680-01 1 12711190 12711190 C T AADACL4 Missense_Mutation p.R73C 0.43 tolerated(0.15) benign(0.014) TCGA-BR-8680-01 1 12837573 12837573 G T PRAMEF12 Missense_Mutation p.R428I 0.33 deleterious(0.03) probably_damaging(0.975) TCGA-BR-8680-01 1 12907715 12907715 G A HNRNPCL1 Missense_Mutation p.S143L 0.45 tolerated(0.91) benign(0.133) TCGA-BR-8680-01 1 12907963 12907963 C A HNRNPCL1 Missense_Mutation p.E60D 0.11 deleterious(0.02) benign(0.111) TCGA-BR-8680-01 1 12908038 12908038 C T HNRNPCL1 Silent p.A35A 0.08 TCGA-BR-8680-01 1 12908204 12908204 C T HNRNPCL1 5'UTR 0.11 TCGA-BR-8680-01 1 12918841 12918841 G T PRAMEF2 Intron 0.24 TCGA-BR-8680-01 1 12920008 12920008 G T PRAMEF2 Nonsense_Mutation p.E250* 0.25 TCGA-BR-8680-01 1 12980012 12980012 G A PRAMEF7 Missense_Mutation p.G402R 0.44 benign(0.003) TCGA-BR-8680-01 1 13001306 13001306 A C PRAMEF6 Missense_Mutation p.L126R 0.20 tolerated(0.41) possibly_damaging(0.533) TCGA-BR-8680-01 1 1326209 1326209 G A CCNL2 Silent p.F232F 0.30 TCGA-BR-8680-01 1 13936969 13936969 C T PDPN Missense_Mutation p.P173S 0.25 tolerated(0.26) benign(0.194) TCGA-BR-8680-01 1 13940804 13940804 C T PDPN Missense_Mutation p.S203L 0.34 deleterious(0.01) benign(0.087) TCGA-BR-8680-01 1 14042097 14042097 G T PRDM2 5'UTR 0.34 TCGA-BR-8680-01 1 14106701 14106701 A C PRDM2 Missense_Mutation p.K804T 0.30 probably_damaging(0.959) TCGA-BR-8680-01 1 14108921 14108921 T C PRDM2 Missense_Mutation p.V1544A 0.39 unknown(0) TCGA-BR-8680-01 1 142713738 142713738 T G RP11-417J8.6 RNA 0.39 TCGA-BR-8680-01 1 143767602 143767602 A C PPIAL4G Missense_Mutation p.F83V 0.05 deleterious_low_confidence(0) possibly_damaging(0.71) TCGA-BR-8680-01 1 144854531 144854531 G T PDE4DIP Missense_Mutation p.F2313L 0.09 tolerated(0.06) possibly_damaging(0.511) TCGA-BR-8680-01 1 144923689 144923689 C T PDE4DIP Splice_Site p.X256_splice 0.14 TCGA-BR-8680-01 1 144955243 144955243 T C PDE4DIP Missense_Mutation p.D64G 0.42 deleterious(0.04) benign(0.012) TCGA-BR-8680-01 1 145075016 145075016 T G PDE4DIP Missense_Mutation p.K93T 0.10 tolerated_low_confidence(0.08) possibly_damaging(0.607) TCGA-BR-8680-01 1 145325967 145325967 G C NBPF10 Silent p.L1280L 0.21 TCGA-BR-8680-01 1 145368509 145368509 C T NBPF10 Missense_Mutation p.S3496L 0.21 possibly_damaging(0.876) TCGA-BR-8680-01 1 145415691 145415691 C T HFE2 Silent p.F170F 0.50 TCGA-BR-8680-01 1 145416773 145416773 T G HFE2 Missense_Mutation p.F373C 0.32 deleterious(0) probably_damaging(0.979) TCGA-BR-8680-01 1 145438759 145438759 C A TXNIP 5'UTR 0.55 TCGA-BR-8680-01 1 145763681 145763681 G T PDZK1 3'UTR 0.23 TCGA-BR-8680-01 1 146672742 146672742 A G FMO5 Missense_Mutation p.V392A 0.51 deleterious(0) possibly_damaging(0.898) TCGA-BR-8680-01 1 146683979 146683979 A G FMO5 Silent p.I204I 0.49 TCGA-BR-8680-01 1 147091096 147091096 G T BCL9 Nonsense_Mutation p.E379* 0.20 TCGA-BR-8680-01 1 147119196 147119196 A C ACP6 3'UTR 0.23 TCGA-BR-8680-01 1 148594658 148594658 G A NBPF15 3'UTR 0.23 TCGA-BR-8680-01 1 148756510 148756510 G A NBPF16 Silent p.S613S 0.12 TCGA-BR-8680-01 1 149879607 149879607 A G SV2A Missense_Mutation p.Y511H 0.51 deleterious(0.03) probably_damaging(0.956) TCGA-BR-8680-01 1 150128372 150128372 T G PLEKHO1 Missense_Mutation p.L97R 0.15 deleterious(0) probably_damaging(0.951) TCGA-BR-8680-01 1 150204192 150204192 C A ANP32E Nonsense_Mutation p.E43* 0.27 TCGA-BR-8680-01 1 150485203 150485203 A C ECM1 Missense_Mutation p.K463T 0.23 tolerated(0.06) benign(0.276) TCGA-BR-8680-01 1 150737226 150737226 A G CTSS Missense_Mutation p.V5A 0.46 tolerated(0.49) benign(0.011) TCGA-BR-8680-01 1 150784538 150784538 C A ARNT Nonsense_Mutation p.E777* 0.14 TCGA-BR-8680-01 1 150902487 150902487 A C SETDB1 Missense_Mutation p.K102T 0.58 deleterious(0.02) benign(0.034) TCGA-BR-8680-01 1 150915523 150915523 A C SETDB1 Missense_Mutation p.K290T 0.31 deleterious(0) possibly_damaging(0.784) TCGA-BR-8680-01 1 150941396 150941396 C T CERS2 Silent p.E57E 0.18 TCGA-BR-8680-01 1 150967826 150967826 T A ANXA9 3'UTR 0.22 TCGA-BR-8680-01 1 150975200 150975200 A C FAM63A Intron 0.65 TCGA-BR-8680-01 1 151006852 151006852 A C PRUNE 3'UTR 0.60 TCGA-BR-8680-01 1 151260153 151260153 A C ZNF687 Silent p.G462G 0.25 TCGA-BR-8680-01 1 151260430 151260430 C T ZNF687 Missense_Mutation p.R555W 0.57 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 1 151315152 151315152 T C RFX5 Missense_Mutation p.D454G 0.29 deleterious_low_confidence(0) possibly_damaging(0.697) TCGA-BR-8680-01 1 151338253 151338253 C T SELENBP1 Missense_Mutation p.E305K 0.25 tolerated(0.17) benign(0.167) TCGA-BR-8680-01 1 151372650 151372650 C A PSMB4 Missense_Mutation p.L112I 0.20 tolerated(1) benign(0.011) TCGA-BR-8680-01 1 151378310 151378310 G T POGZ Silent p.I1067I 0.19 TCGA-BR-8680-01 1 151492667 151492667 G A CGN Missense_Mutation p.R300Q 0.25 deleterious(0.04) probably_damaging(0.96) TCGA-BR-8680-01 1 151688369 151688369 T C CELF3 Missense_Mutation p.Y43C 0.39 deleterious(0.03) possibly_damaging(0.886) TCGA-BR-8680-01 1 151779865 151779865 A G RORC 3'UTR 0.31 TCGA-BR-8680-01 1 152057296 152057296 T C TCHHL1 3'UTR 0.30 TCGA-BR-8680-01 1 152057614 152057614 G T TCHHL1 Silent p.V848V 0.19 TCGA-BR-8680-01 1 152060019 152060019 G A TCHHL1 Missense_Mutation p.P47S 0.26 tolerated(0.06) possibly_damaging(0.822) TCGA-BR-8680-01 1 152187700 152187700 T C HRNR Silent p.Q2135Q 0.14 TCGA-BR-8680-01 1 152188414 152188414 G A HRNR Silent p.Y1897Y 0.21 TCGA-BR-8680-01 1 152275925 152275925 T C FLG Missense_Mutation p.T3813A 0.22 unknown(0) TCGA-BR-8680-01 1 152276355 152276355 T C FLG Silent p.G3669G 0.30 TCGA-BR-8680-01 1 152279151 152279151 A C FLG Silent p.S2737S 0.13 TCGA-BR-8680-01 1 152279605 152279605 G A FLG Missense_Mutation p.S2586F 0.48 probably_damaging(0.925) TCGA-BR-8680-01 1 152285754 152285754 T C FLG Silent p.V536V 0.25 TCGA-BR-8680-01 1 152286132 152286132 G A FLG Silent p.S410S 0.55 TCGA-BR-8680-01 1 152286754 152286754 C A FLG Missense_Mutation p.R203I 0.57 probably_damaging(0.982) TCGA-BR-8680-01 1 152382288 152382288 G A CRNN Missense_Mutation p.R424C 0.22 tolerated(0.29) benign(0) TCGA-BR-8680-01 1 152732460 152732460 C T KPRP Silent p.F132F 0.55 TCGA-BR-8680-01 1 152760197 152760197 T G LCE1E 3'UTR 0.61 TCGA-BR-8680-01 1 152777469 152777469 A G LCE1C 3'UTR 0.48 TCGA-BR-8680-01 1 152784956 152784956 C T LCE1B Missense_Mutation p.P12S 0.51 deleterious_low_confidence(0) unknown(0) TCGA-BR-8680-01 1 152856943 152856943 C T SMCP Silent p.G15G 0.23 TCGA-BR-8680-01 1 152975767 152975767 A G SPRR3 Missense_Mutation p.T91A 0.16 tolerated(0.15) benign(0.429) TCGA-BR-8680-01 1 153029005 153029005 C T SPRR2A Silent p.P69P 0.25 TCGA-BR-8680-01 1 153314133 153314133 C T PGLYRP4 Missense_Mutation p.A199T 0.26 tolerated(0.37) benign(0.446) TCGA-BR-8680-01 1 153391694 153391694 T G S100A7A Missense_Mutation p.F72C 0.61 deleterious(0) probably_damaging(0.993) TCGA-BR-8680-01 1 153430395 153430395 T C S100A7 Missense_Mutation p.N65D 0.22 tolerated(0.12) benign(0.105) TCGA-BR-8680-01 1 153507171 153507171 T G S100A6 3'UTR 0.25 TCGA-BR-8680-01 1 153638198 153638198 G A ILF2 Missense_Mutation p.A134V 0.22 deleterious(0.03) benign(0.196) TCGA-BR-8680-01 1 153662791 153662791 G T NPR1 Missense_Mutation p.K988N 0.40 deleterious(0) probably_damaging(0.995) TCGA-BR-8680-01 1 153719761 153719761 T C INTS3 Missense_Mutation p.W147R 0.24 deleterious(0) probably_damaging(0.974) TCGA-BR-8680-01 1 153913426 153913426 G A DENND4B Missense_Mutation p.S427L 0.50 deleterious(0) probably_damaging(0.996) TCGA-BR-8680-01 1 153963678 153963678 T G RPS27 Missense_Mutation p.F32V 0.11 deleterious(0.02) possibly_damaging(0.558) TCGA-BR-8680-01 1 154026819 154026819 A G NUP210L Missense_Mutation p.V1123A 0.06 tolerated(0.05) probably_damaging(0.999) TCGA-BR-8680-01 1 154112362 154112362 C A NUP210L Missense_Mutation p.E211D 0.53 tolerated(0.19) benign(0.008) TCGA-BR-8680-01 1 154141803 154141803 C T TPM3 Missense_Mutation p.A278T 0.60 tolerated(1) benign(0.006) TCGA-BR-8680-01 1 154163762 154163762 T G TPM3 Missense_Mutation p.Q48P 0.18 deleterious(0) possibly_damaging(0.474) TCGA-BR-8680-01 1 154228216 154228216 G A UBAP2L Silent p.S714S 0.08 TCGA-BR-8680-01 1 154315667 154315667 G A ATP8B2 Missense_Mutation p.R544H 0.38 tolerated(0.22) probably_damaging(0.997) TCGA-BR-8680-01 1 15441017 15441017 C T KAZN Silent p.F738F 0.18 TCGA-BR-8680-01 1 154493951 154493951 C T TDRD10 Missense_Mutation p.P122L 0.18 tolerated(1) benign(0) TCGA-BR-8680-01 1 154517377 154517377 G A TDRD10 Missense_Mutation p.D302N 0.16 tolerated(0.12) benign(0.028) TCGA-BR-8680-01 1 154543740 154543740 G A CHRNB2 Silent p.P147P 0.23 TCGA-BR-8680-01 1 154685971 154685971 T C KCNN3 Missense_Mutation p.D623G 0.23 deleterious(0) possibly_damaging(0.723) TCGA-BR-8680-01 1 154744733 154744733 C T KCNN3 Missense_Mutation p.R389H 0.54 deleterious(0.02) possibly_damaging(0.897) TCGA-BR-8680-01 1 154960706 154960706 C A FLAD1 Missense_Mutation p.F166L 0.23 tolerated(0.13) possibly_damaging(0.734) TCGA-BR-8680-01 1 155223732 155223732 A G FAM189B Missense_Mutation p.L144P 0.25 tolerated(0.32) probably_damaging(0.998) TCGA-BR-8680-01 1 155288068 155288068 G A FDPS Missense_Mutation p.E224K 0.18 deleterious(0.01) possibly_damaging(0.788) TCGA-BR-8680-01 1 155319149 155319149 G A ASH1L Missense_Mutation p.A2508V 0.50 tolerated_low_confidence(0.07) benign(0.146) TCGA-BR-8680-01 1 15541819 15541819 T G TMEM51 Missense_Mutation p.L79R 0.28 deleterious(0) probably_damaging(0.989) TCGA-BR-8680-01 1 155448772 155448772 G A ASH1L Missense_Mutation p.R1297C 0.54 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BR-8680-01 1 156047038 156047038 T C MEX3A Missense_Mutation p.E297G 0.21 deleterious(0.02) possibly_damaging(0.787) TCGA-BR-8680-01 1 156214957 156214957 G A PAQR6 Silent p.F89F 0.17 TCGA-BR-8680-01 1 156263158 156263158 G A C1orf85 Silent p.F336F 0.20 TCGA-BR-8680-01 1 156279094 156279094 T C CCT3 Missense_Mutation p.T512A 0.54 tolerated(1) probably_damaging(0.953) TCGA-BR-8680-01 1 156339125 156339125 C A RHBG Missense_Mutation p.L29I 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8680-01 1 156376906 156376906 G T C1orf61 Missense_Mutation p.S130Y 0.25 deleterious_low_confidence(0) probably_damaging(0.919) TCGA-BR-8680-01 1 156520055 156520055 C A IQGAP3 Missense_Mutation p.R608I 0.49 deleterious(0.03) possibly_damaging(0.52) TCGA-BR-8680-01 1 156533432 156533432 C T IQGAP3 Missense_Mutation p.E178K 0.19 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 1 156616856 156616856 G A BCAN Missense_Mutation p.D119N 0.38 tolerated(0.11) probably_damaging(1) TCGA-BR-8680-01 1 156616943 156616943 G A BCAN Missense_Mutation p.D148N 0.28 deleterious(0) probably_damaging(0.968) TCGA-BR-8680-01 1 156627954 156627954 C T BCAN Silent p.S776S 0.17 TCGA-BR-8680-01 1 156641598 156641598 C A NES Missense_Mutation p.E794D 0.51 tolerated(0.05) benign(0.03) TCGA-BR-8680-01 1 156705540 156705540 G A RRNAD1 Missense_Mutation p.R382Q 0.24 deleterious(0.03) benign(0.412) TCGA-BR-8680-01 1 156902367 156902367 G A LRRC71 Intron 0.58 TCGA-BR-8680-01 1 157514687 157514687 G A FCRL5 Missense_Mutation p.R165C 0.56 tolerated(0.15) possibly_damaging(0.849) TCGA-BR-8680-01 1 157666827 157666827 A G FCRL3 Intron 0.48 TCGA-BR-8680-01 1 157719465 157719465 C A FCRL2 Nonsense_Mutation p.E428* 0.27 TCGA-BR-8680-01 1 157740375 157740375 T G FCRL2 Missense_Mutation p.K45T 0.08 tolerated(0.1) benign(0.017) TCGA-BR-8680-01 1 157765827 157765827 A C FCRL1 3'UTR 0.29 TCGA-BR-8680-01 1 157767670 157767670 C T FCRL1 Missense_Mutation p.E392K 0.52 tolerated(0.42) benign(0.007) TCGA-BR-8680-01 1 15809762 15809762 C T CELA2B Silent p.N120N 0.16 TCGA-BR-8680-01 1 158151317 158151317 A G CD1D Missense_Mutation p.D45G 0.22 tolerated(0.06) probably_damaging(0.96) TCGA-BR-8680-01 1 158227618 158227618 T G CD1A 3'UTR 0.24 TCGA-BR-8680-01 1 158299693 158299693 G A CD1B Nonsense_Mutation p.R186* 0.55 TCGA-BR-8680-01 1 158517116 158517116 T G OR6Y1 Silent p.T260T 0.23 TCGA-BR-8680-01 1 158592868 158592868 G A SPTA1 Missense_Mutation p.R2009C 0.18 deleterious(0) probably_damaging(0.976) TCGA-BR-8680-01 1 158606495 158606495 T G SPTA1 Missense_Mutation p.Q1749P 0.51 deleterious(0) probably_damaging(0.98) TCGA-BR-8680-01 1 158621249 158621249 T C SPTA1 Missense_Mutation p.T1129A 0.25 tolerated(1) benign(0.023) TCGA-BR-8680-01 1 158623098 158623098 T G SPTA1 Missense_Mutation p.N1052H 0.46 tolerated(0.07) benign(0.007) TCGA-BR-8680-01 1 158623119 158623119 G A SPTA1 Missense_Mutation p.R1045W 0.29 deleterious(0.02) benign(0.035) TCGA-BR-8680-01 1 158639264 158639264 C A SPTA1 Missense_Mutation p.E589D 0.18 deleterious(0) benign(0.142) TCGA-BR-8680-01 1 158669933 158669933 C T OR6K2 Silent p.S170S 0.44 TCGA-BR-8680-01 1 158687804 158687804 G T OR6K3 Silent p.I34I 0.20 TCGA-BR-8680-01 1 158725631 158725631 G A OR6K6 Silent p.G342G 0.17 TCGA-BR-8680-01 1 158746725 158746725 C A OR6N2 Missense_Mutation p.R234I 0.28 deleterious(0) probably_damaging(0.988) TCGA-BR-8680-01 1 158746739 158746739 T G OR6N2 Missense_Mutation p.K229N 0.14 deleterious(0.01) benign(0.371) TCGA-BR-8680-01 1 15874828 15874828 A G DNAJC16 Missense_Mutation p.T310A 0.23 tolerated(0.25) benign(0.001) TCGA-BR-8680-01 1 158815580 158815580 G T MNDA Missense_Mutation p.E258D 0.44 deleterious(0.04) benign(0.002) TCGA-BR-8680-01 1 158817600 158817600 A G MNDA Missense_Mutation p.H357R 0.22 deleterious(0.01) probably_damaging(0.964) TCGA-BR-8680-01 1 158819009 158819009 A G MNDA Silent p.G402G 0.13 TCGA-BR-8680-01 1 158946549 158946549 T A PYHIN1 3'UTR 0.23 TCGA-BR-8680-01 1 159043205 159043205 G T AIM2 Missense_Mutation p.L29I 0.49 tolerated(0.08) benign(0.077) TCGA-BR-8680-01 1 159162412 159162412 G A CADM3 Missense_Mutation p.E126K 0.18 deleterious(0.02) probably_damaging(0.996) TCGA-BR-8680-01 1 159176026 159176026 T G DARC Missense_Mutation p.V268G 0.24 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 1 15964914 15964914 G A DDI2 Missense_Mutation p.A249T 0.24 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 1 159683518 159683518 C A CRP Missense_Mutation p.D158Y 0.27 deleterious(0.04) possibly_damaging(0.704) TCGA-BR-8680-01 1 159684337 159684337 C T CRP 5'UTR 0.21 TCGA-BR-8680-01 1 159778115 159778115 C T FCRL6 Missense_Mutation p.T67I 0.51 tolerated(0.46) benign(0.016) TCGA-BR-8680-01 1 159778757 159778757 T G FCRL6 Missense_Mutation p.F109C 0.35 deleterious(0) probably_damaging(0.994) TCGA-BR-8680-01 1 159846352 159846352 A C CCDC19 Missense_Mutation p.I449S 0.30 tolerated(0.12) possibly_damaging(0.868) TCGA-BR-8680-01 1 159846428 159846428 G A CCDC19 Missense_Mutation p.R424W 0.31 deleterious(0.04) possibly_damaging(0.615) TCGA-BR-8680-01 1 159922090 159922090 A G SLAMF9 Missense_Mutation p.V209A 0.20 tolerated(0.21) benign(0.004) TCGA-BR-8680-01 1 160097591 160097591 G A ATP1A2 Missense_Mutation p.G333E 0.63 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 1 160099926 160099926 G T ATP1A2 Missense_Mutation p.S499I 0.18 tolerated(0.09) benign(0.004) TCGA-BR-8680-01 1 160125849 160125849 C T ATP1A4 Silent p.I142I 0.24 TCGA-BR-8680-01 1 160160780 160160780 C T CASQ1 Missense_Mutation p.A80V 0.30 tolerated(0.41) benign(0.003) TCGA-BR-8680-01 1 160268902 160268902 T G COPA Missense_Mutation p.K616T 0.24 tolerated(0.08) benign(0.088) TCGA-BR-8680-01 1 160523839 160523839 C A CD84 Missense_Mutation p.K162N 0.26 tolerated(0.06) benign(0.182) TCGA-BR-8680-01 1 160604606 160604606 A G SLAMF1 Missense_Mutation p.V166A 0.16 tolerated(0.38) benign(0.007) TCGA-BR-8680-01 1 160604614 160604614 G A SLAMF1 Silent p.G163G 0.37 TCGA-BR-8680-01 1 160720183 160720183 C A SLAMF7 Missense_Mutation p.L247I 0.18 tolerated(0.86) benign(0.003) TCGA-BR-8680-01 1 160793289 160793289 C A LY9 Silent p.L511L 0.29 TCGA-BR-8680-01 1 160811101 160811101 T C CD244 Missense_Mutation p.D190G 0.49 tolerated(0.07) probably_damaging(0.919) TCGA-BR-8680-01 1 160968840 160968840 C T F11R Missense_Mutation p.R286Q 0.57 deleterious(0.02) probably_damaging(0.926) TCGA-BR-8680-01 1 161022287 161022287 A C ARHGAP30 Missense_Mutation p.L295V 0.06 deleterious(0.03) possibly_damaging(0.841) TCGA-BR-8680-01 1 161029440 161029440 C T ARHGAP30 Missense_Mutation p.R55H 0.49 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 1 161044462 161044462 G A PVRL4 Silent p.Y313Y 0.17 TCGA-BR-8680-01 1 161193167 161193167 G A APOA2 Silent p.L9L 0.19 TCGA-BR-8680-01 1 161512836 161512836 T G FCGR3A Missense_Mutation p.K280T 0.30 tolerated(0.08) benign(0.131) TCGA-BR-8680-01 1 161518349 161518349 A C FCGR3A Missense_Mutation p.F97V 0.05 deleterious(0) possibly_damaging(0.729) TCGA-BR-8680-01 1 161559538 161559538 A G RP11-25K21.6 Intron 0.20 TCGA-BR-8680-01 1 162270424 162270424 T G NOS1AP Missense_Mutation p.L91R 0.22 tolerated(0.42) benign(0.011) TCGA-BR-8680-01 1 16237756 16237756 C A SPEN Missense_Mutation p.F401L 0.26 probably_damaging(0.994) TCGA-BR-8680-01 1 16254624 16254624 G A SPEN Missense_Mutation p.R630H 0.53 probably_damaging(0.996) TCGA-BR-8680-01 1 162551117 162551117 T C UAP1 Silent p.N234N 0.21 TCGA-BR-8680-01 1 16255513 16255513 A C SPEN Missense_Mutation p.K926N 0.28 probably_damaging(0.996) TCGA-BR-8680-01 1 162560241 162560241 T C UAP1 Missense_Mutation p.V433A 0.06 tolerated(0.84) probably_damaging(0.929) TCGA-BR-8680-01 1 16260420 16260420 T C SPEN Missense_Mutation p.V2562A 0.32 probably_damaging(0.986) TCGA-BR-8680-01 1 16265254 16265254 C T SPEN Silent p.G3582G 0.25 TCGA-BR-8680-01 1 163039216 163039216 G A RGS4 Missense_Mutation p.S78N 0.34 tolerated_low_confidence(0.24) benign(0) TCGA-BR-8680-01 1 163317623 163317623 C T NUF2 Missense_Mutation p.S340L 0.24 deleterious(0.01) possibly_damaging(0.656) TCGA-BR-8680-01 1 16359671 16359671 A C CLCNKA Missense_Mutation p.N646H 0.24 tolerated(0.39) benign(0.005) TCGA-BR-8680-01 1 16360278 16360278 A G CLCNKA 3'UTR 0.50 TCGA-BR-8680-01 1 164815832 164815832 T G PBX1 Silent p.G404G 0.12 TCGA-BR-8680-01 1 165182951 165182951 C T LMX1A Missense_Mutation p.R199K 0.47 deleterious(0) probably_damaging(0.973) TCGA-BR-8680-01 1 16528923 16528923 C T ARHGEF19 Missense_Mutation p.R685Q 0.19 deleterious(0.02) benign(0.3) TCGA-BR-8680-01 1 165324860 165324860 C T LMX1A Intron 0.30 TCGA-BR-8680-01 1 165638645 165638645 G T ALDH9A1 Missense_Mutation p.L325I 0.17 tolerated(0.33) benign(0.008) TCGA-BR-8680-01 1 165664630 165664630 T G ALDH9A1 Silent p.R62R 0.25 TCGA-BR-8680-01 1 16577149 16577149 A C FBXO42 3'UTR 0.35 TCGA-BR-8680-01 1 16632304 16632304 A G FBXO42 Missense_Mutation p.S121P 0.30 deleterious(0) possibly_damaging(0.8) TCGA-BR-8680-01 1 166973498 166973498 T G MAEL Missense_Mutation p.F202C 0.58 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 1 167097037 167097037 A G DUSP27 Missense_Mutation p.D890G 0.32 tolerated(0.08) possibly_damaging(0.859) TCGA-BR-8680-01 1 167408594 167408594 T C CD247 Missense_Mutation p.N69S 0.41 tolerated(0.12) benign(0.095) TCGA-BR-8680-01 1 167921046 167921046 G A DCAF6 Missense_Mutation p.E36K 0.17 deleterious(0) probably_damaging(0.991) TCGA-BR-8680-01 1 168037606 168037606 G A DCAF6 Missense_Mutation p.R899Q 0.24 deleterious(0) probably_damaging(0.973) TCGA-BR-8680-01 1 168208388 168208388 C T SFT2D2 Missense_Mutation p.P145S 0.45 deleterious(0.01) probably_damaging(0.965) TCGA-BR-8680-01 1 169080737 169080737 G A ATP1B1 Splice_Site p.X76_splice 0.21 TCGA-BR-8680-01 1 169101455 169101455 A C ATP1B1 3'UTR 0.15 TCGA-BR-8680-01 1 169101868 169101868 A G NME7 3'UTR 0.86 TCGA-BR-8680-01 1 169292429 169292429 G T NME7 Silent p.V68V 0.20 TCGA-BR-8680-01 1 169509977 169509977 G A F5 Missense_Mutation p.L1451F 0.49 tolerated(0.27) benign(0.063) TCGA-BR-8680-01 1 169521904 169521904 T C F5 Missense_Mutation p.Y396C 0.15 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 1 169771777 169771777 G A C1orf112 Missense_Mutation p.D28N 0.27 deleterious(0.03) probably_damaging(1) TCGA-BR-8680-01 1 169821144 169821144 G A SCYL3 3'Flank 0.17 TCGA-BR-8680-01 1 169822194 169822194 T G C1orf112 3'UTR 0.52 TCGA-BR-8680-01 1 169823858 169823858 C T SCYL3 Silent p.E574E 0.20 TCGA-BR-8680-01 1 169828220 169828220 G A SCYL3 Missense_Mutation p.A425V 0.20 tolerated(0.2) benign(0.11) TCGA-BR-8680-01 1 169836042 169836042 G T SCYL3 Missense_Mutation p.F270L 0.27 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 1 170511686 170511686 G T GORAB Missense_Mutation p.E183D 0.28 deleterious(0.04) probably_damaging(0.999) TCGA-BR-8680-01 1 170952658 170952658 G A MROH9 Missense_Mutation p.E238K 0.12 tolerated(1) benign(0) TCGA-BR-8680-01 1 170967331 170967331 G T MROH9 Missense_Mutation p.E504D 0.26 deleterious(0.03) benign(0.149) TCGA-BR-8680-01 1 170967484 170967484 C T MROH9 Intron 0.51 TCGA-BR-8680-01 1 171173122 171173122 G A FMO2 Missense_Mutation p.R249Q 0.22 tolerated(0.29) benign(0.085) TCGA-BR-8680-01 1 171300852 171300852 C T FMO4 Silent p.R186R 0.20 TCGA-BR-8680-01 1 172411136 172411136 A C PIGC Missense_Mutation p.I209M 0.19 tolerated(0.25) benign(0.013) TCGA-BR-8680-01 1 172539808 172539808 A G SUCO Silent p.T329T 0.15 TCGA-BR-8680-01 1 172634779 172634779 T C FASLG Missense_Mutation p.S157P 0.20 deleterious(0.02) benign(0.15) TCGA-BR-8680-01 1 172635170 172635170 G A FASLG 3'UTR 0.16 TCGA-BR-8680-01 1 17265432 17265432 T C CROCC Missense_Mutation p.V468A 0.31 benign(0.112) TCGA-BR-8680-01 1 17280759 17280759 G T CROCC Missense_Mutation p.E1076D 0.12 possibly_damaging(0.519) TCGA-BR-8680-01 1 173174606 173174606 G A TNFSF4 Intron 0.20 TCGA-BR-8680-01 1 173176216 173176216 G A TNFSF4 Silent p.L34L 0.24 TCGA-BR-8680-01 1 173542456 173542456 C A SLC9C2 Missense_Mutation p.R304I 0.23 tolerated(0.75) benign(0.002) TCGA-BR-8680-01 1 173579162 173579162 C T ANKRD45 3'UTR 0.30 TCGA-BR-8680-01 1 173616051 173616051 C A ANKRD45 Nonsense_Mutation p.E144* 0.17 TCGA-BR-8680-01 1 173754461 173754461 G A KLHL20 3'UTR 0.24 TCGA-BR-8680-01 1 173795873 173795873 C T DARS2 Missense_Mutation p.S59L 0.19 tolerated(0.15) benign(0.001) TCGA-BR-8680-01 1 173833533 173833533 T G ZBTB37 5'Flank 0.29 TCGA-BR-8680-01 1 173934066 173934066 C T RC3H1 Silent p.P509P 0.30 TCGA-BR-8680-01 1 174418351 174418351 A G GPR52 3'UTR 0.50 TCGA-BR-8680-01 1 175325525 175325525 G A TNR Silent p.H1016H 0.20 TCGA-BR-8680-01 1 175372721 175372721 G A TNR Silent p.G177G 0.18 TCGA-BR-8680-01 1 175375428 175375428 G A TNR Silent p.I141I 0.53 TCGA-BR-8680-01 1 176525332 176525332 C A PAPPA2 5'UTR 0.21 TCGA-BR-8680-01 1 176833233 176833233 C T ASTN1 3'UTR 0.31 TCGA-BR-8680-01 1 176857271 176857271 G A ASTN1 Nonsense_Mutation p.R1004* 0.54 TCGA-BR-8680-01 1 17690157 17690157 C A PADI4 Missense_Mutation p.F633L 0.49 deleterious(0.01) possibly_damaging(0.771) TCGA-BR-8680-01 1 176903370 176903370 G A ASTN1 Silent p.G863G 0.45 TCGA-BR-8680-01 1 176983952 176983952 G A ASTN1 Missense_Mutation p.R500W 0.56 deleterious(0) probably_damaging(0.998) TCGA-BR-8680-01 1 17707627 17707627 A G PADI6 RNA 0.38 TCGA-BR-8680-01 1 17721561 17721561 C A PADI6 RNA 0.28 TCGA-BR-8680-01 1 177245497 177245497 C T BRINP2 Silent p.I313I 0.51 TCGA-BR-8680-01 1 17735647 17735647 T G RCC2 Missense_Mutation p.E503A 0.33 deleterious(0.03) benign(0.084) TCGA-BR-8680-01 1 178423770 178423770 C T RASAL2 Missense_Mutation p.S733F 0.19 deleterious(0.02) possibly_damaging(0.857) TCGA-BR-8680-01 1 179335551 179335551 G A AXDND1 5'UTR 0.14 TCGA-BR-8680-01 1 179399642 179399642 T C AXDND1 Missense_Mutation p.V463A 0.48 deleterious(0.02) benign(0.066) TCGA-BR-8680-01 1 179504086 179504086 C T AXDND1 Missense_Mutation p.S1007F 0.51 deleterious(0.02) unknown(0) TCGA-BR-8680-01 1 179528894 179528894 G T NPHS2 Missense_Mutation p.L152I 0.44 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 1 179564917 179564917 G A TDRD5 Silent p.E265E 0.49 TCGA-BR-8680-01 1 179834390 179834390 T C TOR1AIP2 Intron 0.21 TCGA-BR-8680-01 1 180904388 180904388 C T KIAA1614 Missense_Mutation p.S448L 0.55 deleterious(0) probably_damaging(0.975) TCGA-BR-8680-01 1 180962512 180962512 C A STX6 Missense_Mutation p.R117I 0.25 deleterious(0.01) possibly_damaging(0.553) TCGA-BR-8680-01 1 18149556 18149556 G A ACTL8 Missense_Mutation p.G18D 0.45 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 1 18152471 18152471 G T ACTL8 Missense_Mutation p.K186N 0.20 deleterious(0.04) benign(0.051) TCGA-BR-8680-01 1 181684518 181684518 G A CACNA1E Missense_Mutation p.A406T 0.20 tolerated(0.11) possibly_damaging(0.499) TCGA-BR-8680-01 1 182555419 182555419 C T RNASEL Missense_Mutation p.A175T 0.17 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 1 182798041 182798041 T G NPL Nonstop_Mutation p.*321Eext*11 0.28 TCGA-BR-8680-01 1 182908317 182908317 C T SHCBP1L Missense_Mutation p.R357H 0.45 tolerated(0.13) possibly_damaging(0.868) TCGA-BR-8680-01 1 183085943 183085943 G A LAMC1 Missense_Mutation p.R490Q 0.51 tolerated(0.62) benign(0.013) TCGA-BR-8680-01 1 183091010 183091010 C T LAMC1 Missense_Mutation p.L715F 0.54 tolerated(0.06) possibly_damaging(0.904) TCGA-BR-8680-01 1 183111855 183111855 G A LAMC1 Missense_Mutation p.R1587H 0.53 tolerated(0.12) benign(0.001) TCGA-BR-8680-01 1 183212631 183212631 A C LAMC2 3'UTR 0.49 TCGA-BR-8680-01 1 183259293 183259293 G A NMNAT2 Silent p.S97S 0.40 TCGA-BR-8680-01 1 183538297 183538297 C T NCF2 Silent p.P231P 0.21 TCGA-BR-8680-01 1 183816872 183816872 C T RGL1 Missense_Mutation p.A139V 0.26 deleterious(0.01) probably_damaging(0.941) TCGA-BR-8680-01 1 183861216 183861216 G A RGL1 Missense_Mutation p.R389Q 0.34 tolerated(0.09) benign(0.036) TCGA-BR-8680-01 1 183873985 183873985 A C RGL1 Missense_Mutation p.E486A 0.26 deleterious(0) probably_damaging(0.976) TCGA-BR-8680-01 1 183909901 183909901 A G COLGALT2 Missense_Mutation p.M473T 0.49 deleterious(0) possibly_damaging(0.875) TCGA-BR-8680-01 1 183913357 183913357 T C COLGALT2 Missense_Mutation p.D457G 0.21 deleterious(0.01) benign(0.232) TCGA-BR-8680-01 1 184677372 184677372 T G EDEM3 Missense_Mutation p.Q651P 0.10 deleterious(0.01) probably_damaging(0.921) TCGA-BR-8680-01 1 184688582 184688582 A G EDEM3 Silent p.L358L 0.17 TCGA-BR-8680-01 1 184764100 184764100 A C FAM129A 3'UTR 0.18 TCGA-BR-8680-01 1 185056762 185056762 G A RNF2 Missense_Mutation p.R26Q 0.18 deleterious(0.04) benign(0.004) TCGA-BR-8680-01 1 185121027 185121027 C A TRMT1L Missense_Mutation p.E92D 0.56 deleterious_low_confidence(0.01) possibly_damaging(0.859) TCGA-BR-8680-01 1 185143597 185143597 T C SWT1 Silent p.N106N 0.49 TCGA-BR-8680-01 1 185175889 185175889 C T SWT1 Missense_Mutation p.R656C 0.58 tolerated(1) benign(0) TCGA-BR-8680-01 1 185183737 185183737 C A SWT1 Missense_Mutation p.L691I 0.19 deleterious(0) probably_damaging(0.997) TCGA-BR-8680-01 1 185191052 185191052 G T SWT1 Missense_Mutation p.K731N 0.51 tolerated(0.56) benign(0.001) TCGA-BR-8680-01 1 185267253 185267253 C T IVNS1ABP Missense_Mutation p.D615N 0.47 tolerated(0.48) possibly_damaging(0.6) TCGA-BR-8680-01 1 185892598 185892598 T C HMCN1 Silent p.S366S 0.53 TCGA-BR-8680-01 1 185892648 185892648 G A HMCN1 Missense_Mutation p.R383Q 0.18 possibly_damaging(0.885) TCGA-BR-8680-01 1 185950199 185950199 G T HMCN1 Nonsense_Mutation p.G886* 0.26 TCGA-BR-8680-01 1 185953431 185953431 C A HMCN1 Missense_Mutation p.S974Y 0.23 benign(0.438) TCGA-BR-8680-01 1 186063435 186063435 C T HMCN1 Silent p.V3408V 0.16 TCGA-BR-8680-01 1 186084048 186084048 G T HMCN1 Missense_Mutation p.D3792Y 0.52 probably_damaging(0.999) TCGA-BR-8680-01 1 186092119 186092119 T C HMCN1 Missense_Mutation p.V4089A 0.58 benign(0.209) TCGA-BR-8680-01 1 186151325 186151325 T C HMCN1 Silent p.D5440D 0.24 TCGA-BR-8680-01 1 186157020 186157020 G A HMCN1 Missense_Mutation p.D5474N 0.16 probably_damaging(0.995) TCGA-BR-8680-01 1 186158953 186158953 C A HMCN1 Silent p.T5617T 0.16 TCGA-BR-8680-01 1 186159014 186159014 A G HMCN1 3'UTR 0.05 TCGA-BR-8680-01 1 186274033 186274033 G T PRG4 Nonsense_Mutation p.E193* 0.42 TCGA-BR-8680-01 1 186277929 186277929 A C PRG4 Missense_Mutation p.K1026N 0.52 unknown(0) TCGA-BR-8680-01 1 186321231 186321231 T G TPR Missense_Mutation p.E782D 0.54 benign(0.217) TCGA-BR-8680-01 1 186643844 186643844 C A PTGS2 Missense_Mutation p.A486S 0.55 deleterious(0) possibly_damaging(0.497) TCGA-BR-8680-01 1 18809805 18809805 T G KLHDC7A Missense_Mutation p.V777G 0.36 deleterious(0) unknown(0) TCGA-BR-8680-01 1 190067455 190067455 T C BRINP3 Missense_Mutation p.N665S 0.48 tolerated(1) benign(0) TCGA-BR-8680-01 1 19027166 19027166 G A PAX7 Missense_Mutation p.R269H 0.35 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 1 190423785 190423785 C T BRINP3 Missense_Mutation p.R79K 0.37 deleterious(0.02) probably_damaging(0.989) TCGA-BR-8680-01 1 19166471 19166471 C A TAS1R2 Missense_Mutation p.K714N 0.36 tolerated(0.43) benign(0.029) TCGA-BR-8680-01 1 19236921 19236921 C T IFFO2 Missense_Mutation p.E455K 0.35 deleterious(0.02) probably_damaging(0.995) TCGA-BR-8680-01 1 193051378 193051378 T C TROVE2 Silent p.C422C 0.57 TCGA-BR-8680-01 1 193099338 193099338 G A CDC73 Missense_Mutation p.R91Q 0.21 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 1 193111184 193111184 A C CDC73 Missense_Mutation p.Q239H 0.51 deleterious(0.04) probably_damaging(0.971) TCGA-BR-8680-01 1 193150455 193150455 G A B3GALT2 Missense_Mutation p.R80W 0.52 deleterious(0.02) possibly_damaging(0.676) TCGA-BR-8680-01 1 19439413 19439413 G T UBR4 Intron 0.20 TCGA-BR-8680-01 1 196303054 196303054 C T KCNT2 Silent p.S640S 0.45 TCGA-BR-8680-01 1 196438181 196438181 C T KCNT2 Silent p.Q134Q 0.27 TCGA-BR-8680-01 1 196648758 196648758 T G CFH Missense_Mutation p.S209A 0.52 tolerated(0.08) possibly_damaging(0.724) TCGA-BR-8680-01 1 196716243 196716243 C A CFH Missense_Mutation p.P1166T 0.19 tolerated(0.08) benign(0.159) TCGA-BR-8680-01 1 196716413 196716413 A G CFH Silent p.K1222K 0.18 TCGA-BR-8680-01 1 196874351 196874351 G A CFHR4 Missense_Mutation p.A123T 0.18 tolerated(0.61) probably_damaging(0.99) TCGA-BR-8680-01 1 196876020 196876020 T C CFHR4 Missense_Mutation p.S156P 0.18 tolerated(0.17) probably_damaging(0.929) TCGA-BR-8680-01 1 196946680 196946680 C T CFHR5 5'Flank 0.58 TCGA-BR-8680-01 1 196952070 196952070 T G CFHR5 Missense_Mutation p.D38E 0.18 tolerated(0.71) benign(0.001) TCGA-BR-8680-01 1 196964986 196964986 A G CFHR5 Missense_Mutation p.I249M 0.14 deleterious(0) probably_damaging(0.966) TCGA-BR-8680-01 1 196977700 196977700 A G CFHR5 Missense_Mutation p.T533A 0.19 tolerated(0.09) probably_damaging(0.988) TCGA-BR-8680-01 1 197021915 197021915 C A F13B Missense_Mutation p.M468I 0.17 tolerated(0.08) benign(0.005) TCGA-BR-8680-01 1 197057536 197057536 A G ASPM Silent p.Y3337Y 0.45 TCGA-BR-8680-01 1 197069802 197069802 T G ASPM Missense_Mutation p.K2860T 0.23 tolerated(0.54) probably_damaging(0.925) TCGA-BR-8680-01 1 197112287 197112287 A C ASPM Missense_Mutation p.I365M 0.49 deleterious(0) possibly_damaging(0.907) TCGA-BR-8680-01 1 197145707 197145707 T A ZBTB41 Missense_Mutation p.K622N 0.50 deleterious(0.04) benign(0.015) TCGA-BR-8680-01 1 197169588 197169588 T G ZBTB41 Missense_Mutation p.K6Q 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.476) TCGA-BR-8680-01 1 197316596 197316596 T C CRB1 Silent p.C325C 0.19 TCGA-BR-8680-01 1 197404523 197404523 A G CRB1 Missense_Mutation p.N1177S 0.25 tolerated(0.14) benign(0.01) TCGA-BR-8680-01 1 197886855 197886855 T C LHX9 5'UTR 0.61 TCGA-BR-8680-01 1 197886937 197886937 G A LHX9 5'UTR 0.52 TCGA-BR-8680-01 1 197896799 197896799 G A LHX9 Missense_Mutation p.R271Q 0.21 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 1 198687388 198687388 T C PTPRC Missense_Mutation p.F539S 0.21 deleterious(0) probably_damaging(0.997) TCGA-BR-8680-01 1 200524575 200524575 T C KIF14 Missense_Mutation p.K1454R 0.25 tolerated(0.2) benign(0.003) TCGA-BR-8680-01 1 200573037 200573037 C T KIF14 Missense_Mutation p.R598Q 0.21 deleterious(0.01) probably_damaging(0.938) TCGA-BR-8680-01 1 200587451 200587451 T C KIF14 Missense_Mutation p.K134R 0.08 tolerated(0.11) benign(0.003) TCGA-BR-8680-01 1 200613475 200613475 T G DDX59 Missense_Mutation p.Q589H 0.23 deleterious(0.03) benign(0.03) TCGA-BR-8680-01 1 200619637 200619637 C A DDX59 Missense_Mutation p.K410N 0.45 tolerated(0.08) possibly_damaging(0.548) TCGA-BR-8680-01 1 200827258 200827258 C A CAMSAP2 3'UTR 0.33 TCGA-BR-8680-01 1 200944028 200944028 G A KIF21B Missense_Mutation p.A1543V 0.45 deleterious(0.03) possibly_damaging(0.628) TCGA-BR-8680-01 1 201018159 201018159 T G CACNA1S Missense_Mutation p.K1437T 0.28 deleterious(0) probably_damaging(0.973) TCGA-BR-8680-01 1 201195200 201195200 G A IGFN1 Missense_Mutation p.A3579T 0.37 benign(0.279) TCGA-BR-8680-01 1 201332436 201332436 A G TNNT2 Silent p.G186G 0.20 TCGA-BR-8680-01 1 201869382 201869382 C A LMOD1 Missense_Mutation p.E253D 0.15 benign(0.002) TCGA-BR-8680-01 1 202301044 202301044 G A UBE2T Silent p.D171D 0.26 TCGA-BR-8680-01 1 202418139 202418139 G A PPP1R12B Missense_Mutation p.D564N 0.22 tolerated(0.19) probably_damaging(0.955) TCGA-BR-8680-01 1 202715102 202715102 T C KDM5B Missense_Mutation p.Y736C 0.19 deleterious(0) probably_damaging(0.997) TCGA-BR-8680-01 1 202842502 202842502 G A RP11-480I12.7 RNA 0.27 TCGA-BR-8680-01 1 202977772 202977772 A G TMEM183A Silent p.V67V 0.58 TCGA-BR-8680-01 1 203150382 203150382 C T CHI3L1 Missense_Mutation p.D207N 0.46 deleterious(0.03) benign(0.11) TCGA-BR-8680-01 1 203802956 203802956 A G ZC3H11A Silent p.R283R 0.20 TCGA-BR-8680-01 1 203807179 203807179 A C ZC3H11A Missense_Mutation p.K320N 0.29 deleterious(0.01) possibly_damaging(0.628) TCGA-BR-8680-01 1 203820233 203820233 G A ZC3H11A Missense_Mutation p.A719T 0.53 tolerated(1) benign(0.001) TCGA-BR-8680-01 1 204512067 204512067 A G MDM4 Missense_Mutation p.N223D 0.48 deleterious(0.01) possibly_damaging(0.455) TCGA-BR-8680-01 1 204518820 204518820 G A MDM4 3'UTR 0.27 TCGA-BR-8680-01 1 204953188 204953188 G A NFASC Intron 0.20 TCGA-BR-8680-01 1 204978776 204978776 C T NFASC Silent p.I1127I 0.22 TCGA-BR-8680-01 1 205053000 205053000 G A TMEM81 Missense_Mutation p.A150V 0.22 tolerated(0.4) benign(0.015) TCGA-BR-8680-01 1 205053297 205053297 A G TMEM81 Missense_Mutation p.V51A 0.22 deleterious(0.02) probably_damaging(0.941) TCGA-BR-8680-01 1 205797811 205797811 G T PM20D1 Silent p.I482I 0.54 TCGA-BR-8680-01 1 205884154 205884154 C A SLC26A9 Missense_Mutation p.D844Y 0.33 unknown(0) TCGA-BR-8680-01 1 206632198 206632198 C T SRGAP2 Missense_Mutation p.R827W 0.21 tolerated(0.11) probably_damaging(0.946) TCGA-BR-8680-01 1 206665007 206665007 G T IKBKE Missense_Mutation p.R587I 0.17 deleterious(0) possibly_damaging(0.836) TCGA-BR-8680-01 1 206760356 206760356 T G RASSF5 3'UTR 0.49 TCGA-BR-8680-01 1 206821076 206821076 G T DYRK3 Missense_Mutation p.R178I 0.19 tolerated(0.27) probably_damaging(0.992) TCGA-BR-8680-01 1 206903322 206903322 G T MAPKAPK2 Missense_Mutation p.E190D 0.17 deleterious(0) probably_damaging(0.981) TCGA-BR-8680-01 1 207273175 207273175 G T C4BPB Missense_Mutation p.E220D 0.56 tolerated(0.06) benign(0.215) TCGA-BR-8680-01 1 207495903 207495903 T C CD55 Missense_Mutation p.F93L 0.20 deleterious(0.02) probably_damaging(0.978) TCGA-BR-8680-01 1 207642169 207642169 G A CR2 Missense_Mutation p.R220Q 0.22 tolerated(0.98) benign(0.004) TCGA-BR-8680-01 1 207648237 207648237 C A CR2 Missense_Mutation p.L798I 0.23 tolerated(0.48) benign(0.428) TCGA-BR-8680-01 1 207648254 207648254 C A CR2 Silent p.V803V 0.25 TCGA-BR-8680-01 1 207851610 207851610 C T CR1L Silent p.F115F 0.41 TCGA-BR-8680-01 1 207890813 207890813 C A CR1L Silent p.I473I 0.49 TCGA-BR-8680-01 1 207975264 207975264 C T C1orf132 RNA 0.45 TCGA-BR-8680-01 1 208202319 208202319 C A PLXNA2 Missense_Mutation p.S1765I 0.27 deleterious(0) probably_damaging(0.99) TCGA-BR-8680-01 1 208390238 208390238 T G PLXNA2 Missense_Mutation p.K344Q 0.56 tolerated(0.07) possibly_damaging(0.875) TCGA-BR-8680-01 1 20879454 20879454 C T FAM43B 5'UTR 0.27 TCGA-BR-8680-01 1 20879493 20879493 C T FAM43B Silent p.F9F 0.21 TCGA-BR-8680-01 1 20991151 20991151 C T KIF17 Missense_Mutation p.E1006K 0.23 deleterious(0) benign(0.036) TCGA-BR-8680-01 1 209936186 209936186 A C TRAF3IP3 Silent p.T174T 0.30 TCGA-BR-8680-01 1 209936841 209936841 C T TRAF3IP3 Missense_Mutation p.A204V 0.18 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 1 210024594 210024594 G A DIEXF Silent p.P691P 0.23 TCGA-BR-8680-01 1 210334179 210334179 T G SYT14 Missense_Mutation p.F551C 0.21 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 1 210334372 210334372 G A SYT14 Silent p.A615A 0.13 TCGA-BR-8680-01 1 210856661 210856661 A G KCNH1 Missense_Mutation p.S978P 0.19 deleterious_low_confidence(0) possibly_damaging(0.628) TCGA-BR-8680-01 1 210977369 210977369 C T KCNH1 Silent p.E534E 0.45 TCGA-BR-8680-01 1 211093016 211093016 C A KCNH1 Missense_Mutation p.E476D 0.21 deleterious(0.04) probably_damaging(1) TCGA-BR-8680-01 1 211451540 211451540 C T RCOR3 Missense_Mutation p.R200C 0.22 deleterious(0) probably_damaging(0.993) TCGA-BR-8680-01 1 211654646 211654646 G A RD3 Nonsense_Mutation p.R38* 0.54 TCGA-BR-8680-01 1 211956643 211956643 T G LPGAT1 Missense_Mutation p.K219Q 0.33 tolerated(0.99) benign(0.008) TCGA-BR-8680-01 1 21220089 21220089 C T EIF4G3 Missense_Mutation p.R675Q 0.32 deleterious(0.02) probably_damaging(0.998) TCGA-BR-8680-01 1 212515594 212515594 G A PPP2R5A Missense_Mutation p.R182Q 0.20 tolerated(0.05) possibly_damaging(0.523) TCGA-BR-8680-01 1 213341250 213341250 G A RPS6KC1 Silent p.E295E 0.47 TCGA-BR-8680-01 1 214171593 214171593 C T PROX1 Missense_Mutation p.S572L 0.19 deleterious(0.04) possibly_damaging(0.853) TCGA-BR-8680-01 1 214491450 214491451 - C SMYD2 Frame_Shift_Ins p.E126Dfs*10 0.33 TCGA-BR-8680-01 1 214492285 214492285 G A SMYD2 Missense_Mutation p.G165R 0.26 tolerated(0.19) benign(0.013) TCGA-BR-8680-01 1 214551407 214551407 C A PTPN14 Missense_Mutation p.Q861H 0.20 tolerated(0.13) possibly_damaging(0.784) TCGA-BR-8680-01 1 214794191 214794191 G A CENPF Missense_Mutation p.R256Q 0.21 benign(0.003) TCGA-BR-8680-01 1 214802406 214802406 A C CENPF Missense_Mutation p.Q362H 0.29 probably_damaging(0.998) TCGA-BR-8680-01 1 214813974 214813974 G A CENPF Missense_Mutation p.D765N 0.18 possibly_damaging(0.649) TCGA-BR-8680-01 1 214815908 214815908 G T CENPF Missense_Mutation p.E1409D 0.16 benign(0.065) TCGA-BR-8680-01 1 214816283 214816283 G T CENPF Missense_Mutation p.E1534D 0.28 probably_damaging(0.972) TCGA-BR-8680-01 1 214826201 214826201 A G CENPF Missense_Mutation p.K2731E 0.58 probably_damaging(0.99) TCGA-BR-8680-01 1 215259996 215259996 C T KCNK2 Missense_Mutation p.S111L 0.51 tolerated(0.29) benign(0.022) TCGA-BR-8680-01 1 215297989 215297989 C T KCNK2 Missense_Mutation p.A124V 0.26 deleterious(0.03) possibly_damaging(0.615) TCGA-BR-8680-01 1 21546588 21546588 C T ECE1 Missense_Mutation p.E725K 0.35 tolerated(0.34) probably_damaging(0.997) TCGA-BR-8680-01 1 21551860 21551860 C T ECE1 Silent p.Q641Q 0.23 TCGA-BR-8680-01 1 215792499 215792499 A C KCTD3 Silent p.V584V 0.21 TCGA-BR-8680-01 1 215812516 215812516 A C USH2A Nonsense_Mutation p.Y5011* 0.20 TCGA-BR-8680-01 1 216108085 216108085 T A USH2A Missense_Mutation p.E2391D 0.46 benign(0.002) TCGA-BR-8680-01 1 216270438 216270438 A C USH2A Missense_Mutation p.L1582R 0.11 probably_damaging(1) TCGA-BR-8680-01 1 216380731 216380731 G T USH2A Missense_Mutation p.S1067Y 0.20 possibly_damaging(0.677) TCGA-BR-8680-01 1 216420132 216420132 A G USH2A Silent p.C868C 0.25 TCGA-BR-8680-01 1 217955597 217955597 G A SPATA17 Missense_Mutation p.D269N 0.20 tolerated(1) benign(0.002) TCGA-BR-8680-01 1 218519991 218519991 C A TGFB2 5'UTR 0.62 TCGA-BR-8680-01 1 218578621 218578621 C T TGFB2 Missense_Mutation p.R181C 0.19 deleterious(0) probably_damaging(0.996) TCGA-BR-8680-01 1 218614827 218614827 T G TGFB2 3'UTR 0.30 TCGA-BR-8680-01 1 21880562 21880562 C A ALPL 5'UTR 0.38 TCGA-BR-8680-01 1 219384943 219384943 C A LYPLAL1 Missense_Mutation p.S196Y 0.25 deleterious(0.01) possibly_damaging(0.678) TCGA-BR-8680-01 1 22005786 22005786 T G USP48 3'UTR 0.33 TCGA-BR-8680-01 1 220191809 220191809 G A EPRS Silent p.I492I 0.21 TCGA-BR-8680-01 1 220279257 220279257 G A IARS2 Missense_Mutation p.C364Y 0.25 tolerated(0.44) probably_damaging(0.999) TCGA-BR-8680-01 1 220291244 220291244 A C IARS2 Intron 0.52 TCGA-BR-8680-01 1 220440069 220440069 C A RAB3GAP2 Intron 0.51 TCGA-BR-8680-01 1 22055105 22055105 C T USP48 Missense_Mutation p.E470K 0.38 tolerated(0.2) benign(0.042) TCGA-BR-8680-01 1 22056301 22056301 C T USP48 Missense_Mutation p.R399H 0.32 deleterious(0.01) possibly_damaging(0.86) TCGA-BR-8680-01 1 222802768 222802768 G A MIA3 Missense_Mutation p.A736T 0.22 deleterious(0) probably_damaging(0.998) TCGA-BR-8680-01 1 222803139 222803139 G A MIA3 Silent p.E859E 0.23 TCGA-BR-8680-01 1 222906034 222906034 A G BROX Missense_Mutation p.D405G 0.25 tolerated(0.13) possibly_damaging(0.477) TCGA-BR-8680-01 1 223177427 223177427 G A DISP1 Silent p.E896E 0.22 TCGA-BR-8680-01 1 223395482 223395482 A G SUSD4 3'UTR 0.44 TCGA-BR-8680-01 1 223568033 223568033 C T C1orf65 Missense_Mutation p.R406C 0.47 deleterious(0.05) possibly_damaging(0.556) TCGA-BR-8680-01 1 223946952 223946952 T C CAPN2 Intron 0.31 TCGA-BR-8680-01 1 223984003 223984003 C T TP53BP2 Silent p.E746E 0.25 TCGA-BR-8680-01 1 223988509 223988509 G T TP53BP2 Missense_Mutation p.S410Y 0.19 deleterious(0.01) benign(0.429) TCGA-BR-8680-01 1 224321810 224321810 C T FBXO28 Missense_Mutation p.R138C 0.62 deleterious(0) possibly_damaging(0.828) TCGA-BR-8680-01 1 224586614 224586614 G A WDR26 Silent p.F514F 0.47 TCGA-BR-8680-01 1 225599097 225599097 C T LBR Missense_Mutation p.R377Q 0.52 deleterious(0.02) probably_damaging(1) TCGA-BR-8680-01 1 226411641 226411641 C T MIXL1 Missense_Mutation p.R87C 0.25 deleterious(0) probably_damaging(0.993) TCGA-BR-8680-01 1 226420152 226420152 G T LIN9 3'UTR 0.20 TCGA-BR-8680-01 1 226421140 226421140 G A LIN9 Missense_Mutation p.R460W 0.22 deleterious(0.01) possibly_damaging(0.889) TCGA-BR-8680-01 1 226825420 226825420 C T ITPKB Missense_Mutation p.R862Q 0.29 deleterious(0.04) probably_damaging(0.999) TCGA-BR-8680-01 1 227219208 227219208 G A CDC42BPA Missense_Mutation p.A1154V 0.24 tolerated(0.1) benign(0.038) TCGA-BR-8680-01 1 227333279 227333279 G A CDC42BPA Missense_Mutation p.R352W 0.21 deleterious(0) probably_damaging(0.955) TCGA-BR-8680-01 1 227400862 227400862 T G CDC42BPA Missense_Mutation p.K110T 0.19 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 1 227842301 227842301 G T ZNF678 Missense_Mutation p.R117I 0.23 tolerated(0.37) benign(0.066) TCGA-BR-8680-01 1 227843225 227843225 G T ZNF678 Missense_Mutation p.R425I 0.21 tolerated(0.31) benign(0.059) TCGA-BR-8680-01 1 227843477 227843477 G T ZNF678 Missense_Mutation p.R509I 0.42 tolerated(0.29) benign(0.001) TCGA-BR-8680-01 1 22816534 22816534 T C ZBTB40 Silent p.G31G 0.29 TCGA-BR-8680-01 1 228238550 228238550 C T WNT3A Silent p.F169F 0.23 TCGA-BR-8680-01 1 228238597 228238597 G A WNT3A Missense_Mutation p.R185H 0.49 deleterious(0.03) probably_damaging(0.961) TCGA-BR-8680-01 1 228285857 228285857 G A ARF1 3'UTR 0.27 TCGA-BR-8680-01 1 2283185 2283185 C A MORN1 Intron 0.29 TCGA-BR-8680-01 1 228402664 228402664 G A OBSCN Missense_Mutation p.E565K 0.27 possibly_damaging(0.692) TCGA-BR-8680-01 1 228434331 228434331 C T OBSCN Missense_Mutation p.T1379I 0.49 possibly_damaging(0.877) TCGA-BR-8680-01 1 228451947 228451947 G T OBSCN Missense_Mutation p.K1756N 0.55 probably_damaging(0.946) TCGA-BR-8680-01 1 228511096 228511096 C T OBSCN Silent p.C6104C 0.14 TCGA-BR-8680-01 1 228527683 228527683 G A OBSCN Missense_Mutation p.D6723N 0.49 probably_damaging(0.999) TCGA-BR-8680-01 1 229580703 229580703 C A NUP133 Missense_Mutation p.D1098Y 0.45 deleterious(0) probably_damaging(0.975) TCGA-BR-8680-01 1 229653939 229653939 A C ABCB10 Missense_Mutation p.F735C 0.46 deleterious(0) probably_damaging(0.91) TCGA-BR-8680-01 1 229675310 229675310 A C ABCB10 Missense_Mutation p.L411R 0.49 deleterious(0) probably_damaging(0.996) TCGA-BR-8680-01 1 229683424 229683424 C A ABCB10 Missense_Mutation p.R248I 0.18 deleterious(0) probably_damaging(0.995) TCGA-BR-8680-01 1 230468774 230468774 G A PGBD5 Silent p.C294C 0.44 TCGA-BR-8680-01 1 230795218 230795218 C T COG2 Silent p.F27F 0.55 TCGA-BR-8680-01 1 231079614 231079614 C T TTC13 Missense_Mutation p.E204K 0.25 deleterious(0.02) possibly_damaging(0.771) TCGA-BR-8680-01 1 231349577 231349577 T C TRIM67 Missense_Mutation p.C714R 0.55 tolerated(0.53) benign(0.165) TCGA-BR-8680-01 1 231374789 231374789 C T C1orf131 Silent p.S88S 0.26 TCGA-BR-8680-01 1 231471824 231471824 G A EXOC8 Silent p.H556H 0.52 TCGA-BR-8680-01 1 23235657 23235657 A G EPHB2 Missense_Mutation p.N833S 0.23 deleterious(0.03) probably_damaging(0.999) TCGA-BR-8680-01 1 232538143 232538143 G A SIPA1L2 Missense_Mutation p.R1673W 0.48 deleterious(0) possibly_damaging(0.677) TCGA-BR-8680-01 1 232596771 232596771 C T SIPA1L2 Missense_Mutation p.R986H 0.23 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 1 232615380 232615380 C T SIPA1L2 Missense_Mutation p.R693K 0.14 tolerated(0.68) benign(0.047) TCGA-BR-8680-01 1 232649902 232649902 G A SIPA1L2 Missense_Mutation p.A395V 0.50 tolerated(0.58) benign(0.014) TCGA-BR-8680-01 1 233482190 233482190 T G MLK4 Missense_Mutation p.L270V 0.28 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 1 233490640 233490640 G T MLK4 Missense_Mutation p.L398F 0.51 deleterious(0.01) probably_damaging(1) TCGA-BR-8680-01 1 234509574 234509574 C A COA6 Missense_Mutation p.S37Y 0.22 tolerated_low_confidence(0.13) benign(0.031) TCGA-BR-8680-01 1 235377167 235377167 T G ARID4B Missense_Mutation p.K586N 0.55 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 1 235383751 235383751 C A ARID4B Nonsense_Mutation p.E425* 0.20 TCGA-BR-8680-01 1 235887376 235887376 G T LYST Silent p.I3089I 0.20 TCGA-BR-8680-01 1 235897198 235897198 C A LYST Missense_Mutation p.K2848N 0.22 tolerated(0.06) benign(0.179) TCGA-BR-8680-01 1 235944236 235944236 C A LYST Nonsense_Mutation p.E1715* 0.47 TCGA-BR-8680-01 1 235972028 235972028 T G LYST Missense_Mutation p.Q697P 0.18 deleterious(0) probably_damaging(0.986) TCGA-BR-8680-01 1 235972915 235972915 T C LYST Silent p.L401L 0.54 TCGA-BR-8680-01 1 23637094 23637094 A G HNRNPR Silent p.R588R 0.33 TCGA-BR-8680-01 1 236557717 236557717 G T EDARADD 5'UTR 0.26 TCGA-BR-8680-01 1 236746034 236746034 A C HEATR1 Splice_Site p.X854_splice 0.25 TCGA-BR-8680-01 1 236749198 236749198 G A HEATR1 Silent p.I657I 0.19 TCGA-BR-8680-01 1 236754253 236754253 A C HEATR1 Missense_Mutation p.F475C 0.43 deleterious(0.01) possibly_damaging(0.75) TCGA-BR-8680-01 1 236907933 236907933 G T ACTN2 Missense_Mutation p.E421D 0.25 tolerated(0.12) benign(0.174) TCGA-BR-8680-01 1 236992548 236992548 A C MTR Missense_Mutation p.E352A 0.18 tolerated(0.27) benign(0.002) TCGA-BR-8680-01 1 237617847 237617847 G T RYR2 Missense_Mutation p.K483N 0.16 possibly_damaging(0.815) TCGA-BR-8680-01 1 23768696 23768696 G T ASAP3 Missense_Mutation p.F218L 0.47 deleterious(0.01) benign(0.011) TCGA-BR-8680-01 1 237880516 237880516 G A RYR2 Missense_Mutation p.E3448K 0.36 benign(0.325) TCGA-BR-8680-01 1 237935360 237935360 A G RYR2 Missense_Mutation p.N3869S 0.56 probably_damaging(0.912) TCGA-BR-8680-01 1 237947276 237947276 C T RYR2 Silent p.H4088H 0.34 TCGA-BR-8680-01 1 237947421 237947421 G A RYR2 Missense_Mutation p.E4137K 0.25 probably_damaging(0.992) TCGA-BR-8680-01 1 237947567 237947567 G T RYR2 Missense_Mutation p.K4185N 0.23 probably_damaging(0.999) TCGA-BR-8680-01 1 238090214 238090214 A C RP11-193H5.1 RNA 0.37 TCGA-BR-8680-01 1 240071148 240071148 C T CHRM3 Nonsense_Mutation p.R133* 0.29 TCGA-BR-8680-01 1 240370340 240370340 C T FMN2 Missense_Mutation p.S743L 0.17 unknown(0) TCGA-BR-8680-01 1 240492436 240492436 G A FMN2 Missense_Mutation p.E1426K 0.21 possibly_damaging(0.667) TCGA-BR-8680-01 1 240492457 240492457 A C FMN2 Missense_Mutation p.K1433Q 0.29 probably_damaging(0.964) TCGA-BR-8680-01 1 240497233 240497233 G A FMN2 Missense_Mutation p.R1544Q 0.14 benign(0.33) TCGA-BR-8680-01 1 241946608 241946608 C A WDR64 Missense_Mutation p.S867Y 0.15 deleterious(0.02) probably_damaging(0.971) TCGA-BR-8680-01 1 241951289 241951289 C A WDR64 Missense_Mutation p.F938L 0.50 tolerated(0.59) benign(0.004) TCGA-BR-8680-01 1 242271009 242271009 C T PLD5 Silent p.A401A 0.26 TCGA-BR-8680-01 1 242271076 242271076 C T PLD5 Missense_Mutation p.R379Q 0.46 deleterious(0.02) probably_damaging(0.959) TCGA-BR-8680-01 1 243328764 243328764 A C CEP170 Nonsense_Mutation p.L833* 0.36 TCGA-BR-8680-01 1 243778458 243778458 T C AKT3 Silent p.E189E 0.51 TCGA-BR-8680-01 1 24410928 24410928 G A MYOM3 Intron 0.43 TCGA-BR-8680-01 1 24413228 24413228 C A MYOM3 Missense_Mutation p.K568N 0.26 deleterious(0.02) benign(0.002) TCGA-BR-8680-01 1 244217801 244217801 C T ZBTB18 Missense_Mutation p.S242L 0.25 tolerated(0.07) benign(0.177) TCGA-BR-8680-01 1 24421951 24421951 G A MYOM3 Silent p.F257F 0.26 TCGA-BR-8680-01 1 244552296 244552296 G A C1orf100 Silent p.P123P 0.25 TCGA-BR-8680-01 1 245022042 245022042 T C HNRNPU Missense_Mutation p.T407A 0.57 tolerated(0.46) unknown(0) TCGA-BR-8680-01 1 245245415 245245415 C T EFCAB2 Nonsense_Mutation p.R72* 0.18 TCGA-BR-8680-01 1 245849116 245849116 G A KIF26B Missense_Mutation p.S944N 0.23 tolerated(0.25) unknown(0) TCGA-BR-8680-01 1 246727664 246727664 A C TFB2M Missense_Mutation p.F129C 0.32 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 1 246811464 246811464 C T CNST Intron 0.31 TCGA-BR-8680-01 1 247162690 247162690 C T ZNF695 Silent p.E73E 0.51 TCGA-BR-8680-01 1 24746100 24746100 C T NIPAL3 Silent p.S21S 0.51 TCGA-BR-8680-01 1 247582372 247582372 G A NLRP3 Silent p.P92P 0.15 TCGA-BR-8680-01 1 247588450 247588450 G A NLRP3 Missense_Mutation p.E569K 0.51 tolerated(0.05) probably_damaging(0.967) TCGA-BR-8680-01 1 247737747 247737747 G A GCSAML 3'UTR 0.30 TCGA-BR-8680-01 1 247769596 247769596 G A OR2G3 Missense_Mutation p.A237T 0.40 deleterious(0.01) possibly_damaging(0.654) TCGA-BR-8680-01 1 24790531 24790531 C T NIPAL3 Silent p.F314F 0.26 TCGA-BR-8680-01 1 247978292 247978292 A G OR14A16 Missense_Mutation p.L247S 0.26 deleterious(0.01) probably_damaging(0.993) TCGA-BR-8680-01 1 248039649 248039649 T G TRIM58 Missense_Mutation p.F440C 0.48 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 1 248059374 248059374 G T OR2W3 Silent p.V162V 0.26 TCGA-BR-8680-01 1 248128684 248128684 A C OR2AK2 Missense_Mutation p.K17N 0.26 tolerated(0.08) benign(0.006) TCGA-BR-8680-01 1 248202363 248202363 G A OR2L2 Missense_Mutation p.R265Q 0.24 tolerated(0.08) benign(0.089) TCGA-BR-8680-01 1 248224049 248224049 T C OR2L3 Silent p.I22I 0.53 TCGA-BR-8680-01 1 248224853 248224853 C T OR2L3 Silent p.S290S 0.61 TCGA-BR-8680-01 1 248403071 248403071 C A OR2M4 Missense_Mutation p.L281I 0.59 tolerated(0.1) benign(0.424) TCGA-BR-8680-01 1 248458301 248458301 C T OR2T12 Missense_Mutation p.E194K 0.17 deleterious(0.01) probably_damaging(0.982) TCGA-BR-8680-01 1 248486997 248486997 G T OR2M7 Missense_Mutation p.L292I 0.30 deleterious(0) possibly_damaging(0.762) TCGA-BR-8680-01 1 248569654 248569654 A G OR2T1 Missense_Mutation p.D120G 0.17 deleterious(0) probably_damaging(0.983) TCGA-BR-8680-01 1 248570369 248570369 C A OR2T1 Missense_Mutation p.F358L 0.23 tolerated(0.67) benign(0.001) TCGA-BR-8680-01 1 248684964 248684964 A G OR2G6 Missense_Mutation p.N6S 0.18 tolerated(0.63) benign(0.001) TCGA-BR-8680-01 1 248685634 248685634 A C OR2G6 Missense_Mutation p.K229N 0.17 deleterious(0.03) benign(0.021) TCGA-BR-8680-01 1 248845530 248845530 C T OR14I1 Missense_Mutation p.A26T 0.38 tolerated(0.39) benign(0.063) TCGA-BR-8680-01 1 25554613 25554613 A C SYF2 Missense_Mutation p.F124L 0.33 deleterious(0) benign(0.098) TCGA-BR-8680-01 1 25655390 25655390 T G RHD Missense_Mutation p.F410C 0.32 deleterious(0) probably_damaging(0.987) TCGA-BR-8680-01 1 26110217 26110217 C T MAN1C1 Silent p.T610T 0.36 TCGA-BR-8680-01 1 26371619 26371619 G A SLC30A2 Missense_Mutation p.A47V 0.33 tolerated(0.26) benign(0.003) TCGA-BR-8680-01 1 26487894 26487894 C T FAM110D Nonsense_Mutation p.R38* 0.33 TCGA-BR-8680-01 1 26646686 26646686 A C CD52 Missense_Mutation p.N27H 0.37 tolerated_low_confidence(0.14) possibly_damaging(0.844) TCGA-BR-8680-01 1 26655305 26655305 G A AIM1L Silent p.I584I 0.30 TCGA-BR-8680-01 1 26658088 26658088 C T AIM1L Silent p.T528T 0.32 TCGA-BR-8680-01 1 26691442 26691442 G T ZNF683 Missense_Mutation p.L199I 0.41 deleterious(0.02) possibly_damaging(0.704) TCGA-BR-8680-01 1 27094302 27094302 A G ARID1A Missense_Mutation p.T1004A 0.39 unknown(0) TCGA-BR-8680-01 1 27097788 27097788 C T ARID1A Missense_Mutation p.S1126F 0.14 unknown(0) TCGA-BR-8680-01 1 27121613 27121613 A C PIGV Missense_Mutation p.N363T 0.41 tolerated(0.45) benign(0.016) TCGA-BR-8680-01 1 27217691 27217691 A C GPATCH3 Missense_Mutation p.F463C 0.34 deleterious(0.01) possibly_damaging(0.75) TCGA-BR-8680-01 1 27688646 27688646 C T MAP3K6 Missense_Mutation p.A451T 0.35 tolerated(0.09) benign(0.056) TCGA-BR-8680-01 1 27697428 27697428 G T FCN3 Missense_Mutation p.F143L 0.30 deleterious(0) benign(0.281) TCGA-BR-8680-01 1 27745548 27745548 C T WASF2 Missense_Mutation p.A58T 0.43 deleterious(0.01) unknown(0) TCGA-BR-8680-01 1 27876445 27876445 G A AHDC1 Missense_Mutation p.R728W 0.38 tolerated(0.11) possibly_damaging(0.835) TCGA-BR-8680-01 1 27939476 27939476 C A FGR Missense_Mutation p.E513D 0.38 tolerated(0.2) probably_damaging(0.948) TCGA-BR-8680-01 1 28319925 28319925 T G EYA3 Missense_Mutation p.K430T 0.28 deleterious(0) possibly_damaging(0.6) TCGA-BR-8680-01 1 28905055 28905055 T G TRNAU1AP 3'Flank 0.50 TCGA-BR-8680-01 1 28906436 28906436 C T TRNAU1AP 3'Flank 0.39 TCGA-BR-8680-01 1 28929965 28929965 A C TAF12 3'UTR 0.48 TCGA-BR-8680-01 1 29605969 29605969 T C PTPRU Missense_Mutation p.I522T 0.41 deleterious(0) probably_damaging(0.992) TCGA-BR-8680-01 1 31191761 31191761 T C MATN1 Missense_Mutation p.Q162R 0.44 tolerated(0.46) benign(0.002) TCGA-BR-8680-01 1 31426818 31426818 C T PUM1 Silent p.T778T 0.42 TCGA-BR-8680-01 1 31532388 31532388 C A PUM1 Missense_Mutation p.R9I 0.39 deleterious_low_confidence(0.01) benign(0.003) TCGA-BR-8680-01 1 32145658 32145658 G T COL16A1 Silent p.I885I 0.14 TCGA-BR-8680-01 1 32206090 32206090 G A BAI2 Missense_Mutation p.S616L 0.39 deleterious(0) probably_damaging(0.967) TCGA-BR-8680-01 1 32280649 32280649 G A SPOCD1 Silent p.L96L 0.37 TCGA-BR-8680-01 1 32636370 32636370 G A KPNA6 Missense_Mutation p.D496N 0.30 tolerated(0.49) benign(0.059) TCGA-BR-8680-01 1 32687990 32687990 G - EIF3I 5'UTR 0.22 TCGA-BR-8680-01 1 32828289 32828289 C T TSSK3 5'UTR 0.22 TCGA-BR-8680-01 1 32829897 32829897 G T TSSK3 3'UTR 0.37 TCGA-BR-8680-01 1 33059046 33059046 A G ZBTB8A Missense_Mutation p.T172A 0.40 benign(0.001) TCGA-BR-8680-01 1 33066006 33066006 C T ZBTB8A Missense_Mutation p.P438S 0.19 possibly_damaging(0.786) TCGA-BR-8680-01 1 33087386 33087386 T G ZBTB8OS 3'UTR 0.40 TCGA-BR-8680-01 1 3319387 3319387 G A PRDM16 Missense_Mutation p.E237K 0.28 tolerated(0.06) possibly_damaging(0.625) TCGA-BR-8680-01 1 33248064 33248064 A C YARS Missense_Mutation p.F328C 0.33 deleterious(0.01) probably_damaging(0.989) TCGA-BR-8680-01 1 3328013 3328013 G A PRDM16 Missense_Mutation p.D418N 0.36 deleterious(0.05) probably_damaging(0.974) TCGA-BR-8680-01 1 33321706 33321706 C A S100PBP 3'UTR 0.32 TCGA-BR-8680-01 1 33330168 33330168 C T FNDC5 Intron 0.33 TCGA-BR-8680-01 1 33330326 33330326 G T FNDC5 Missense_Mutation p.T116N 0.36 tolerated(0.24) benign(0.094) TCGA-BR-8680-01 1 33960823 33960823 A C ZSCAN20 Missense_Mutation p.K960T 0.29 deleterious(0.01) possibly_damaging(0.608) TCGA-BR-8680-01 1 34037145 34037145 C T CSMD2 Silent p.T2650T 0.30 TCGA-BR-8680-01 1 3428235 3428235 G A MEGF6 Silent p.I331I 0.30 TCGA-BR-8680-01 1 35259868 35259868 G A GJA4 Silent p.S18S 0.39 TCGA-BR-8680-01 1 35370086 35370086 C T DLGAP3 Missense_Mutation p.S300N 0.32 deleterious(0.02) benign(0.154) TCGA-BR-8680-01 1 35452862 35452862 A C ZMYM6 Missense_Mutation p.F1274C 0.36 deleterious_low_confidence(0.04) benign(0.003) TCGA-BR-8680-01 1 35480485 35480485 C T ZMYM6 Missense_Mutation p.R203Q 0.25 tolerated(0.54) probably_damaging(0.995) TCGA-BR-8680-01 1 35484869 35484869 T G ZMYM6 Intron 0.35 TCGA-BR-8680-01 1 35579062 35579062 C T ZMYM1 Missense_Mutation p.S544L 0.24 deleterious(0.03) possibly_damaging(0.836) TCGA-BR-8680-01 1 35580514 35580514 G A ZMYM1 Missense_Mutation p.R1028K 0.32 tolerated(0.2) probably_damaging(0.99) TCGA-BR-8680-01 1 35852607 35852607 T G ZMYM4 Missense_Mutation p.L614V 0.27 tolerated(0.31) benign(0.113) TCGA-BR-8680-01 1 35925982 35925982 G C KIAA0319L Missense_Mutation p.L451V 0.30 deleterious(0.03) probably_damaging(0.97) TCGA-BR-8680-01 1 36301555 36301555 A G AGO4 Missense_Mutation p.K562R 0.29 deleterious(0) possibly_damaging(0.795) TCGA-BR-8680-01 1 36499775 36499775 C T AGO3 Missense_Mutation p.A531V 0.21 deleterious(0) benign(0.166) TCGA-BR-8680-01 1 36602647 36602647 G A TRAPPC3 3'UTR 0.35 TCGA-BR-8680-01 1 36754728 36754728 G T THRAP3 Nonsense_Mutation p.E370* 0.28 TCGA-BR-8680-01 1 36859142 36859142 C T LSM10 3'UTR 0.56 TCGA-BR-8680-01 1 36886172 36886172 G A OSCP1 Silent p.F288F 0.33 TCGA-BR-8680-01 1 36926331 36926331 A C MRPS15 Missense_Mutation p.V116G 0.35 tolerated(0.38) benign(0.243) TCGA-BR-8680-01 1 37319226 37319226 C T GRIK3 Missense_Mutation p.G401D 0.38 deleterious(0.02) probably_damaging(0.943) TCGA-BR-8680-01 1 37337828 37337828 G A GRIK3 Silent p.F231F 0.33 TCGA-BR-8680-01 1 38172656 38172656 C T CDCA8 Nonsense_Mutation p.R240* 0.25 TCGA-BR-8680-01 1 39305238 39305238 C T RRAGC Missense_Mutation p.R396Q 0.33 deleterious_low_confidence(0.04) benign(0.01) TCGA-BR-8680-01 1 39341360 39341360 A G GJA9 Silent p.C137C 0.33 TCGA-BR-8680-01 1 39341827 39341827 T G GJA9 5'UTR 0.19 TCGA-BR-8680-01 1 39358897 39358897 C A RHBDL2 Splice_Site p.X204_splice 0.38 TCGA-BR-8680-01 1 39749819 39749819 T C MACF1 Missense_Mutation p.S338P 0.29 possibly_damaging(0.814) TCGA-BR-8680-01 1 39757662 39757662 G A MACF1 Silent p.T627T 0.32 TCGA-BR-8680-01 1 39775246 39775246 G A MACF1 Missense_Mutation p.E937K 0.34 possibly_damaging(0.824) TCGA-BR-8680-01 1 39785358 39785358 G A MACF1 Missense_Mutation p.R1328K 0.32 benign(0.003) TCGA-BR-8680-01 1 39797149 39797149 G A MACF1 Intron 0.32 TCGA-BR-8680-01 1 39797279 39797279 A C MACF1 Intron 0.28 TCGA-BR-8680-01 1 39801293 39801293 C A MACF1 Intron 0.33 TCGA-BR-8680-01 1 39802891 39802891 A G MACF1 Intron 0.29 TCGA-BR-8680-01 1 39851600 39851600 A C MACF1 Silent p.A2719A 0.45 TCGA-BR-8680-01 1 39907927 39907927 C T MACF1 Nonsense_Mutation p.R4236* 0.33 TCGA-BR-8680-01 1 39910339 39910339 C T MACF1 Silent p.L4420L 0.22 TCGA-BR-8680-01 1 40124988 40124988 A G NT5C1A Silent p.D304D 0.32 TCGA-BR-8680-01 1 40131295 40131295 G A NT5C1A Missense_Mutation p.R111W 0.42 deleterious(0) probably_damaging(0.995) TCGA-BR-8680-01 1 40537207 40537207 C T CAP1 3'UTR 0.26 TCGA-BR-8680-01 1 40701665 40701665 G T RLF Nonsense_Mutation p.E431* 0.35 TCGA-BR-8680-01 1 40705137 40705137 T G RLF Missense_Mutation p.L1588R 0.35 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 1 40758159 40758159 T G ZMPSTE24 Missense_Mutation p.F416V 0.37 deleterious(0) probably_damaging(0.992) TCGA-BR-8680-01 1 40922718 40922718 G T ZFP69B Missense_Mutation p.E105D 0.15 deleterious(0) probably_damaging(0.956) TCGA-BR-8680-01 1 41475885 41475885 G A CTPS1 Missense_Mutation p.E582K 0.30 tolerated(0.07) benign(0.28) TCGA-BR-8680-01 1 41949772 41949772 T C EDN2 Missense_Mutation p.D56G 0.32 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 1 42049380 42049380 C A HIVEP3 Missense_Mutation p.K363N 0.33 probably_damaging(0.997) TCGA-BR-8680-01 1 42880351 42880351 C A RIMKLA Silent p.I294I 0.37 TCGA-BR-8680-01 1 42914271 42914271 T G ZMYND12 Missense_Mutation p.K97N 0.32 tolerated(0.08) probably_damaging(0.914) TCGA-BR-8680-01 1 43011180 43011180 G T CCDC30 Missense_Mutation p.D119Y 0.30 deleterious(0) benign(0.258) TCGA-BR-8680-01 1 43241101 43241101 G A C1orf50 3'UTR 0.22 TCGA-BR-8680-01 1 43241138 43241138 G T C1orf50 3'UTR 0.33 TCGA-BR-8680-01 1 43392690 43392690 C T SLC2A1 3'UTR 0.41 TCGA-BR-8680-01 1 43396474 43396474 C T SLC2A1 Silent p.S113S 0.30 TCGA-BR-8680-01 1 43647389 43647389 T G WDR65 Silent p.A114A 0.23 TCGA-BR-8680-01 1 43775110 43775110 C T TIE1 Missense_Mutation p.P414S 0.41 tolerated(0.36) benign(0.036) TCGA-BR-8680-01 1 43908278 43908278 C T SZT2 Nonsense_Mutation p.R2657* 0.38 TCGA-BR-8680-01 1 44156616 44156616 C T KDM4A Missense_Mutation p.S713L 0.29 tolerated(0.38) benign(0.007) TCGA-BR-8680-01 1 44463386 44463386 C A SLC6A9 Missense_Mutation p.S651I 0.33 deleterious(0.03) possibly_damaging(0.451) TCGA-BR-8680-01 1 45120404 45120404 C T TMEM53 Missense_Mutation p.E221K 0.37 tolerated(0.92) benign(0.005) TCGA-BR-8680-01 1 45292046 45292046 G A PTCH2 Missense_Mutation p.A997V 0.28 tolerated(0.07) benign(0.201) TCGA-BR-8680-01 1 45977024 45977024 C A PRDX1 Nonsense_Mutation p.E193* 0.28 TCGA-BR-8680-01 1 46073549 46073549 A C NASP Missense_Mutation p.E322D 0.24 tolerated_low_confidence(0.08) benign(0.004) TCGA-BR-8680-01 1 46496777 46496777 C T MAST2 Missense_Mutation p.A936V 0.37 tolerated_low_confidence(0.83) benign(0.001) TCGA-BR-8680-01 1 46521530 46521530 T G PIK3R3 Missense_Mutation p.K293T 0.38 deleterious(0) possibly_damaging(0.556) TCGA-BR-8680-01 1 46531771 46531771 A G PIK3R3 Silent p.S192S 0.30 TCGA-BR-8680-01 1 47027233 47027233 C A MKNK1 Missense_Mutation p.D349Y 0.33 deleterious(0) probably_damaging(0.99) TCGA-BR-8680-01 1 47283819 47283819 G A CYP4B1 Missense_Mutation p.R430H 0.26 deleterious(0.01) probably_damaging(0.96) TCGA-BR-8680-01 1 47284422 47284422 T C CYP4B1 Missense_Mutation p.V492A 0.37 deleterious(0.02) benign(0.297) TCGA-BR-8680-01 1 47398325 47398325 G A CYP4A11 Intron 0.30 TCGA-BR-8680-01 1 47564769 47564769 G A CYP4Z1 Missense_Mutation p.E294K 0.37 deleterious(0.04) possibly_damaging(0.881) TCGA-BR-8680-01 1 47583620 47583620 C T CYP4Z1 3'UTR 0.16 TCGA-BR-8680-01 1 47735473 47735473 C T STIL Missense_Mutation p.D817N 0.24 tolerated(0.06) possibly_damaging(0.527) TCGA-BR-8680-01 1 47746069 47746069 T C STIL Silent p.R687R 0.38 TCGA-BR-8680-01 1 47767944 47767944 G A STIL Missense_Mutation p.S76L 0.41 tolerated(1) benign(0.001) TCGA-BR-8680-01 1 48821347 48821347 A C SPATA6 Missense_Mutation p.L397V 0.30 tolerated(0.55) benign(0.025) TCGA-BR-8680-01 1 48864948 48864948 G T SPATA6 Intron 0.47 TCGA-BR-8680-01 1 49100248 49100248 G A AGBL4 Missense_Mutation p.R290C 0.23 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 1 51826915 51826915 A G EPS15 Silent p.C824C 0.38 TCGA-BR-8680-01 1 52253122 52253122 C T OSBPL9 Nonsense_Mutation p.R710* 0.31 TCGA-BR-8680-01 1 52263977 52263977 C A NRD1 Nonsense_Mutation p.E918* 0.28 TCGA-BR-8680-01 1 52272492 52272492 T G NRD1 Missense_Mutation p.K763T 0.36 deleterious(0.01) probably_damaging(0.933) TCGA-BR-8680-01 1 52498747 52498747 T G KTI12 Missense_Mutation p.L229F 0.24 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 1 52703746 52703746 G A ZFYVE9 Silent p.P219P 0.32 TCGA-BR-8680-01 1 52822738 52822738 G A CC2D1B Nonsense_Mutation p.R611* 0.37 TCGA-BR-8680-01 1 52981601 52981601 C A ZCCHC11 Nonsense_Mutation p.E282* 0.32 TCGA-BR-8680-01 1 53443987 53443987 A C SCP2 Missense_Mutation p.E258A 0.32 tolerated(0.59) benign(0.057) TCGA-BR-8680-01 1 54060472 54060472 G A GLIS1 Missense_Mutation p.A35V 0.38 tolerated_low_confidence(0.13) benign(0.004) TCGA-BR-8680-01 1 55167779 55167779 G A MROH7 Missense_Mutation p.R1101H 0.14 tolerated(0.31) probably_damaging(0.975) TCGA-BR-8680-01 1 55624658 55624658 G A USP24 Missense_Mutation p.R374C 0.47 tolerated(0.16) possibly_damaging(0.781) TCGA-BR-8680-01 1 57169927 57169927 C T PRKAA2 Missense_Mutation p.H358Y 0.40 tolerated(0.35) benign(0.071) TCGA-BR-8680-01 1 57192242 57192242 A G C1orf168 Missense_Mutation p.L603P 0.31 tolerated(0.14) benign(0.021) TCGA-BR-8680-01 1 57481012 57481012 C T DAB1 Missense_Mutation p.A330T 0.26 tolerated(0.1) probably_damaging(0.999) TCGA-BR-8680-01 1 59125684 59125684 C A MYSM1 Missense_Mutation p.K824N 0.25 tolerated_low_confidence(0.17) benign(0.01) TCGA-BR-8680-01 1 59154730 59154730 C A MYSM1 Nonsense_Mutation p.E127* 0.32 TCGA-BR-8680-01 1 60456397 60456397 G A C1orf87 Missense_Mutation p.S530L 0.04 tolerated(0.36) benign(0.004) TCGA-BR-8680-01 1 62367109 62367109 A C INADL Missense_Mutation p.K1120T 0.35 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 1 6246758 6246758 C T RPL22 Missense_Mutation p.E121K 0.32 tolerated(0.09) unknown(0) TCGA-BR-8680-01 1 62586964 62586964 T G INADL Missense_Mutation p.S1668A 0.32 tolerated(0.18) benign(0.002) TCGA-BR-8680-01 1 62910637 62910637 G T USP1 Missense_Mutation p.E262D 0.27 tolerated(0.37) benign(0.019) TCGA-BR-8680-01 1 62910879 62910879 A C USP1 Missense_Mutation p.K343T 0.38 deleterious(0.01) probably_damaging(0.988) TCGA-BR-8680-01 1 62979530 62979530 G A DOCK7 Nonsense_Mutation p.R1295* 0.30 TCGA-BR-8680-01 1 63024812 63024812 C T DOCK7 Missense_Mutation p.R760Q 0.20 tolerated(0.15) benign(0.334) TCGA-BR-8680-01 1 63269479 63269479 G T ATG4C Nonsense_Mutation p.E8* 0.40 TCGA-BR-8680-01 1 63282366 63282366 A C ATG4C Missense_Mutation p.E94A 0.31 deleterious(0.04) possibly_damaging(0.612) TCGA-BR-8680-01 1 63872011 63872011 T C ALG6 Missense_Mutation p.Y124H 0.28 deleterious(0) probably_damaging(0.979) TCGA-BR-8680-01 1 65016280 65016280 A G CACHD1 Missense_Mutation p.I17V 0.38 deleterious(0.02) benign(0.36) TCGA-BR-8680-01 1 65691785 65691785 G A AK4 Silent p.T199T 0.27 TCGA-BR-8680-01 1 6586025 6586025 A G NOL9 Silent p.D666D 0.21 TCGA-BR-8680-01 1 65878696 65878696 G A DNAJC6 Silent p.K967K 0.47 TCGA-BR-8680-01 1 66081710 66081710 C A LEPR Nonsense_Mutation p.S672* 0.33 TCGA-BR-8680-01 1 66081833 66081833 C T LEPR Missense_Mutation p.T713M 0.27 deleterious(0.02) benign(0.414) TCGA-BR-8680-01 1 66101895 66101895 T G LEPR Missense_Mutation p.F899V 0.36 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 1 6634952 6634952 G T TAS1R1 Nonsense_Mutation p.E254* 0.52 TCGA-BR-8680-01 1 6647651 6647651 G A ZBTB48 Silent p.S446S 0.19 TCGA-BR-8680-01 1 6676920 6676920 T C PHF13 Splice_Site p.X47_splice 0.20 TCGA-BR-8680-01 1 67243091 67243091 C A TCTEX1D1 Missense_Mutation p.S165Y 0.32 deleterious(0) benign(0.213) TCGA-BR-8680-01 1 67292585 67292585 C T WDR78 Missense_Mutation p.V753I 0.37 tolerated(1) benign(0.037) TCGA-BR-8680-01 1 67358960 67358960 C G WDR78 Missense_Mutation p.S161T 0.37 tolerated(0.1) benign(0.117) TCGA-BR-8680-01 1 67558934 67558934 C A C1orf141 Missense_Mutation p.Q319H 0.28 deleterious(0.03) benign(0.143) TCGA-BR-8680-01 1 67559156 67559156 G A C1orf141 Silent p.F245F 0.35 TCGA-BR-8680-01 1 67561067 67561067 C A C1orf141 Nonsense_Mutation p.E152* 0.43 TCGA-BR-8680-01 1 67635287 67635287 G A IL23R Silent p.E111E 0.33 TCGA-BR-8680-01 1 67786106 67786106 C T IL12RB2 Silent p.L19L 0.42 TCGA-BR-8680-01 1 67804371 67804371 T G IL12RB2 Missense_Mutation p.I341M 0.30 deleterious(0) probably_damaging(0.954) TCGA-BR-8680-01 1 67816583 67816583 A C IL12RB2 Missense_Mutation p.I357L 0.32 deleterious(0.01) probably_damaging(0.987) TCGA-BR-8680-01 1 67852280 67852280 C A IL12RB2 Missense_Mutation p.A625E 0.32 tolerated(0.11) benign(0.033) TCGA-BR-8680-01 1 67880971 67880971 C A SERBP1 Missense_Mutation p.D350Y 0.34 deleterious(0) probably_damaging(0.995) TCGA-BR-8680-01 1 68659690 68659690 G A WLS Silent p.F107F 0.23 TCGA-BR-8680-01 1 70502292 70502292 C T LRRC7 Missense_Mutation p.S720F 0.38 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-BR-8680-01 1 70504011 70504011 C T LRRC7 Missense_Mutation p.S797L 0.40 deleterious_low_confidence(0) benign(0.033) TCGA-BR-8680-01 1 70742520 70742520 C T ANKRD13C Missense_Mutation p.R408Q 0.40 tolerated(0.12) probably_damaging(0.997) TCGA-BR-8680-01 1 71477785 71477785 A C PTGER3 Intron 0.44 TCGA-BR-8680-01 1 71513120 71513120 G A PTGER3 Silent p.C47C 0.22 TCGA-BR-8680-01 1 74901807 74901807 G T TNNI3K Missense_Mutation p.D707Y 0.29 deleterious(0) probably_damaging(0.996) TCGA-BR-8680-01 1 75038351 75038351 C T C1orf173 Missense_Mutation p.E1015K 0.30 tolerated(0.11) benign(0.079) TCGA-BR-8680-01 1 75039081 75039081 C A C1orf173 Missense_Mutation p.K771N 0.32 tolerated(0.09) benign(0.094) TCGA-BR-8680-01 1 75055504 75055504 C T C1orf173 Missense_Mutation p.E663K 0.33 tolerated(0.05) benign(0.44) TCGA-BR-8680-01 1 75097446 75097446 C A C1orf173 Missense_Mutation p.R257I 0.35 deleterious(0) probably_damaging(0.991) TCGA-BR-8680-01 1 75097470 75097470 C A C1orf173 Missense_Mutation p.R249I 0.32 deleterious(0) probably_damaging(0.948) TCGA-BR-8680-01 1 75229792 75229792 T G TYW3 Missense_Mutation p.Y259D 0.31 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BR-8680-01 1 76199306 76199306 C A ACADM Missense_Mutation p.S131Y 0.26 tolerated(0.31) benign(0.047) TCGA-BR-8680-01 1 76255178 76255178 G A RABGGTB Intron 0.26 TCGA-BR-8680-01 1 76276403 76276403 T G MSH4 Missense_Mutation p.L204V 0.28 deleterious(0.04) possibly_damaging(0.794) TCGA-BR-8680-01 1 76878054 76878054 G A ST6GALNAC3 Missense_Mutation p.R192H 0.29 probably_damaging(0.915) TCGA-BR-8680-01 1 7725121 7725121 C T CAMTA1 Silent p.G838G 0.33 TCGA-BR-8680-01 1 77528914 77528914 A C ST6GALNAC5 3'UTR 0.18 TCGA-BR-8680-01 1 78041751 78041751 A G ZZZ3 Splice_Site p.X777_splice 0.18 TCGA-BR-8680-01 1 7806101 7806101 G T CAMTA1 Nonsense_Mutation p.E1523* 0.30 TCGA-BR-8680-01 1 78098028 78098028 C T ZZZ3 Missense_Mutation p.E338K 0.34 tolerated(0.91) benign(0) TCGA-BR-8680-01 1 78180466 78180466 T G USP33 Missense_Mutation p.K714T 0.33 deleterious(0.04) probably_damaging(0.999) TCGA-BR-8680-01 1 78195593 78195593 A G USP33 Silent p.F254F 0.31 TCGA-BR-8680-01 1 78325057 78325057 C T FAM73A Nonsense_Mutation p.R392* 0.26 TCGA-BR-8680-01 1 78408391 78408391 A C NEXN Missense_Mutation p.E635D 0.33 tolerated(0.22) benign(0.007) TCGA-BR-8680-01 1 7863754 7863754 T C PER3 Silent p.L327L 0.25 TCGA-BR-8680-01 1 7863904 7863904 C T PER3 Nonsense_Mutation p.R377* 0.32 TCGA-BR-8680-01 1 7907902 7907902 C A UTS2 Missense_Mutation p.S115I 0.43 deleterious(0) probably_damaging(0.996) TCGA-BR-8680-01 1 79125147 79125147 C T IFI44 Nonsense_Mutation p.R331* 0.35 TCGA-BR-8680-01 1 79383340 79383340 T C ELTD1 Silent p.G576G 0.23 TCGA-BR-8680-01 1 79392576 79392576 G A ELTD1 Nonsense_Mutation p.R360* 0.18 TCGA-BR-8680-01 1 79392761 79392761 G A ELTD1 Missense_Mutation p.A298V 0.25 tolerated(1) benign(0.003) TCGA-BR-8680-01 1 7998864 7998864 T G TNFRSF9 Missense_Mutation p.N42T 0.32 tolerated(0.38) benign(0.004) TCGA-BR-8680-01 1 82302724 82302724 T G LPHN2 Missense_Mutation p.F19V 0.37 tolerated(0.5) benign(0.001) TCGA-BR-8680-01 1 82409063 82409063 G T LPHN2 Nonsense_Mutation p.E270* 0.40 TCGA-BR-8680-01 1 84386821 84386821 C T TTLL7 Missense_Mutation p.R438Q 0.34 deleterious(0.05) probably_damaging(0.992) TCGA-BR-8680-01 1 84399362 84399362 C T TTLL7 Missense_Mutation p.E326K 0.22 tolerated(0.15) benign(0.074) TCGA-BR-8680-01 1 85124050 85124050 T G SSX2IP Missense_Mutation p.R343S 0.25 deleterious(0) probably_damaging(0.99) TCGA-BR-8680-01 1 85279676 85279676 C A LPAR3 Missense_Mutation p.K305N 0.26 deleterious(0.03) benign(0.384) TCGA-BR-8680-01 1 85403733 85403733 A C MCOLN2 Missense_Mutation p.F381L 0.22 tolerated(1) benign(0.001) TCGA-BR-8680-01 1 85424296 85424296 A C MCOLN2 Nonsense_Mutation p.Y109* 0.24 TCGA-BR-8680-01 1 85484734 85484734 C A MCOLN3 3'UTR 0.24 TCGA-BR-8680-01 1 85499799 85499799 C T MCOLN3 Missense_Mutation p.D178N 0.36 deleterious(0.04) possibly_damaging(0.556) TCGA-BR-8680-01 1 85511015 85511015 C T MCOLN3 Missense_Mutation p.S10N 0.33 tolerated(0.14) benign(0.043) TCGA-BR-8680-01 1 85583527 85583527 C A WDR63 Missense_Mutation p.F634L 0.32 tolerated(0.15) benign(0.032) TCGA-BR-8680-01 1 85736475 85736475 G A BCL10 Nonsense_Mutation p.R58* 0.41 TCGA-BR-8680-01 1 85817243 85817243 G A DDAH1 Silent p.G141G 0.39 TCGA-BR-8680-01 1 86047711 86047711 C T CYR61 Silent p.G126G 0.26 TCGA-BR-8680-01 1 86119630 86119630 G T ZNHIT6 3'UTR 0.42 TCGA-BR-8680-01 1 86947924 86947924 G T CLCA1 Missense_Mutation p.K198N 0.26 tolerated(0.56) benign(0.001) TCGA-BR-8680-01 1 86952219 86952219 G A CLCA1 Missense_Mutation p.R322H 0.32 deleterious(0.01) probably_damaging(1) TCGA-BR-8680-01 1 86952423 86952423 G A CLCA1 Missense_Mutation p.R390Q 0.27 tolerated(0.28) benign(0.102) TCGA-BR-8680-01 1 86956953 86956953 T G CLCA1 Missense_Mutation p.L455V 0.30 tolerated(0.13) benign(0.02) TCGA-BR-8680-01 1 86965337 86965337 C A CLCA1 Missense_Mutation p.A785D 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8680-01 1 87012763 87012763 A G CLCA4 5'UTR 0.34 TCGA-BR-8680-01 1 87100011 87100011 C T RP4-651E10.4 Intron 0.22 TCGA-BR-8680-01 1 87563550 87563550 C T HS2ST1 Silent p.G206G 0.27 TCGA-BR-8680-01 1 89236102 89236102 G A PKN2 Missense_Mutation p.R191Q 0.40 deleterious(0.01) probably_damaging(0.982) TCGA-BR-8680-01 1 89250336 89250336 C T PKN2 Missense_Mutation p.R334C 0.39 tolerated(0.12) benign(0.134) TCGA-BR-8680-01 1 89294214 89294214 C A PKN2 Missense_Mutation p.L824I 0.32 deleterious(0) probably_damaging(0.912) TCGA-BR-8680-01 1 89449292 89449292 G T RBMXL1 Nonsense_Mutation p.S73* 0.13 TCGA-BR-8680-01 1 89518944 89518944 G T GBP1 3'UTR 0.47 TCGA-BR-8680-01 1 89726250 89726250 T G GBP5 3'UTR 0.55 TCGA-BR-8680-01 1 89733110 89733110 C T GBP5 Missense_Mutation p.D140N 0.32 deleterious(0.02) benign(0.178) TCGA-BR-8680-01 1 899373 899373 C T KLHL17 Nonsense_Mutation p.R477* 0.35 TCGA-BR-8680-01 1 90179562 90179562 C A LRRC8C Missense_Mutation p.S478Y 0.34 deleterious(0.02) possibly_damaging(0.556) TCGA-BR-8680-01 1 90478702 90478702 A C ZNF326 Missense_Mutation p.N278H 0.46 deleterious(0.04) benign(0.36) TCGA-BR-8680-01 1 9079302 9079302 G A SLC2A7 Silent p.I134I 0.27 TCGA-BR-8680-01 1 91178030 91178030 C T BARHL2 Missense_Mutation p.A335T 0.27 deleterious(0.01) unknown(0) TCGA-BR-8680-01 1 91404174 91404174 T G ZNF644 Missense_Mutation p.N913H 0.24 deleterious(0.01) possibly_damaging(0.896) TCGA-BR-8680-01 1 91404625 91404625 T G ZNF644 Missense_Mutation p.K762N 0.31 deleterious(0.01) probably_damaging(0.997) TCGA-BR-8680-01 1 91405928 91405928 T A ZNF644 Missense_Mutation p.Q328L 0.28 tolerated(0.1) benign(0.358) TCGA-BR-8680-01 1 91985809 91985809 G T CDC7 Nonsense_Mutation p.E435* 0.31 TCGA-BR-8680-01 1 92442839 92442839 G T BRDT Missense_Mutation p.K286N 0.32 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 1 92469985 92469985 G A BRDT Silent p.K801K 0.32 TCGA-BR-8680-01 1 92515886 92515886 G A EPHX4 Missense_Mutation p.R206Q 0.27 tolerated(0.12) benign(0.033) TCGA-BR-8680-01 1 92735291 92735291 G T GLMN Silent p.V322V 0.26 TCGA-BR-8680-01 1 92846313 92846313 C A RPAP2 Missense_Mutation p.S574Y 0.34 deleterious(0.01) benign(0.276) TCGA-BR-8680-01 1 92941559 92941559 G A GFI1 3'UTR 0.36 TCGA-BR-8680-01 1 9305498 9305498 C T H6PD Missense_Mutation p.R169W 0.20 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 1 93073271 93073271 C A EVI5 Missense_Mutation p.S598I 0.20 tolerated(0.05) benign(0.372) TCGA-BR-8680-01 1 9324972 9324972 C T H6PD 3'UTR 0.33 TCGA-BR-8680-01 1 93672695 93672695 G T CCDC18 Nonsense_Mutation p.E371* 0.30 TCGA-BR-8680-01 1 93712497 93712497 G T CCDC18 Nonsense_Mutation p.E1115* 0.32 TCGA-BR-8680-01 1 94107889 94107889 G T BCAR3 Missense_Mutation p.L110I 0.28 tolerated(0.49) benign(0.007) TCGA-BR-8680-01 1 9427639 9427639 C T SPSB1 3'UTR 0.42 TCGA-BR-8680-01 1 94463453 94463453 G A ABCA4 Silent p.I2231I 0.30 TCGA-BR-8680-01 1 94526167 94526167 T C ABCA4 Missense_Mutation p.I696V 0.35 deleterious(0.01) possibly_damaging(0.824) TCGA-BR-8680-01 1 94528764 94528764 T C ABCA4 Missense_Mutation p.D555G 0.34 tolerated(0.25) benign(0.02) TCGA-BR-8680-01 1 94640272 94640272 T C ARHGAP29 Missense_Mutation p.E980G 0.26 tolerated(0.16) possibly_damaging(0.735) TCGA-BR-8680-01 1 94650597 94650597 C T ARHGAP29 Missense_Mutation p.R647Q 0.47 deleterious(0.03) benign(0.158) TCGA-BR-8680-01 1 94651015 94651015 A G ARHGAP29 Silent p.F601F 0.42 TCGA-BR-8680-01 1 97548022 97548022 A G DPYD Missense_Mutation p.V924A 0.28 tolerated(0.1) benign(0.416) TCGA-BR-8680-01 1 97770839 97770839 G A DPYD Nonsense_Mutation p.R759* 0.29 TCGA-BR-8680-01 1 9780235 9780235 G A PIK3CD Missense_Mutation p.A469T 0.23 tolerated(0.89) probably_damaging(0.933) TCGA-BR-8680-01 1 97839170 97839170 A C DPYD Missense_Mutation p.L669V 0.25 deleterious(0.02) possibly_damaging(0.534) TCGA-BR-8680-01 1 981387 981387 C T AGRN Silent p.F908F 0.37 TCGA-BR-8680-01 1 99772241 99772241 G A LPPR4 Missense_Mutation p.S656N 0.21 tolerated(0.19) benign(0.007) TCGA-BR-8680-01 1 9990241 9990241 G A LZIC 3'UTR 0.28 TCGA-BR-8680-01 20 10025099 10025099 C T ANKEF1 Nonsense_Mutation p.R202* 0.30 TCGA-BR-8680-01 20 10626682 10626682 C T JAG1 Missense_Mutation p.D646N 0.37 deleterious(0.03) probably_damaging(1) TCGA-BR-8680-01 20 11904430 11904430 C T BTBD3 3'UTR 0.36 TCGA-BR-8680-01 20 123301 123301 T G DEFB126 Missense_Mutation p.F11C 0.32 tolerated(0.07) possibly_damaging(0.869) TCGA-BR-8680-01 20 123306 123306 C T DEFB126 Missense_Mutation p.L13F 0.33 tolerated(0.05) possibly_damaging(0.86) TCGA-BR-8680-01 20 1291527 1291528 - T SDCBP2 Frame_Shift_Ins p.I248Dfs*85 0.17 TCGA-BR-8680-01 20 13561609 13561609 C A TASP1 Silent p.S141S 0.32 TCGA-BR-8680-01 20 1629814 1629814 C T SIRPG Missense_Mutation p.R105H 0.29 tolerated(0.08) benign(0.082) TCGA-BR-8680-01 20 16348377 16348377 G T KIF16B Missense_Mutation p.S1198Y 0.30 deleterious_low_confidence(0) benign(0.278) TCGA-BR-8680-01 20 16717945 16717945 A C SNRPB2 Missense_Mutation p.K93Q 0.38 deleterious(0.03) benign(0.148) TCGA-BR-8680-01 20 168744 168744 T G DEFB128 Missense_Mutation p.K22T 0.35 deleterious(0.02) possibly_damaging(0.727) TCGA-BR-8680-01 20 17474607 17474607 T G BFSP1 3'UTR 0.40 TCGA-BR-8680-01 20 18142616 18142616 G A CSRP2BP Missense_Mutation p.A279T 0.33 tolerated(0.18) benign(0.008) TCGA-BR-8680-01 20 18365009 18365009 T C DZANK1 3'UTR 0.42 TCGA-BR-8680-01 20 18461089 18461089 G T POLR3F Missense_Mutation p.R206I 0.33 deleterious(0) possibly_damaging(0.862) TCGA-BR-8680-01 20 1961040 1961040 G A PDYN Missense_Mutation p.R232C 0.35 deleterious(0) probably_damaging(0.993) TCGA-BR-8680-01 20 20007509 20007509 G A NAA20 Missense_Mutation p.R84Q 0.28 deleterious(0.04) probably_damaging(0.923) TCGA-BR-8680-01 20 20013155 20013155 G A NAA20 Silent p.K103K 0.35 TCGA-BR-8680-01 20 20140041 20140041 G A C20orf26 Missense_Mutation p.E327K 0.31 tolerated(0.56) benign(0.012) TCGA-BR-8680-01 20 20322485 20322485 G A C20orf26 Missense_Mutation p.E1145K 0.26 deleterious(0.03) benign(0.197) TCGA-BR-8680-01 20 20493273 20493273 G A RALGAPA2 Silent p.F1580F 0.36 TCGA-BR-8680-01 20 207940 207940 T G DEFB129 Missense_Mutation p.L4R 0.31 deleterious(0) probably_damaging(0.98) TCGA-BR-8680-01 20 2097735 2097735 C T STK35 Missense_Mutation p.A439V 0.33 deleterious(0) probably_damaging(0.985) TCGA-BR-8680-01 20 23064997 23064997 C T CD93 Silent p.A611A 0.31 TCGA-BR-8680-01 20 23584228 23584228 G A CST9 Silent p.V133V 0.35 TCGA-BR-8680-01 20 23614628 23614628 G A CST3 Silent p.F122F 0.41 TCGA-BR-8680-01 20 2377260 2377260 A C TGM6 Missense_Mutation p.N178T 0.12 deleterious(0) possibly_damaging(0.829) TCGA-BR-8680-01 20 2411116 2411116 C A TGM6 Missense_Mutation p.S568Y 0.23 deleterious(0.01) possibly_damaging(0.898) TCGA-BR-8680-01 20 25059430 25059430 G A VSX1 Intron 0.26 TCGA-BR-8680-01 20 25258996 25258996 C T PYGB Silent p.F299F 0.39 TCGA-BR-8680-01 20 2604963 2604963 G A TMC2 Missense_Mutation p.D743N 0.34 deleterious(0.01) benign(0.165) TCGA-BR-8680-01 20 2605002 2605002 G A TMC2 Missense_Mutation p.A756T 0.37 tolerated(0.31) benign(0.065) TCGA-BR-8680-01 20 30064492 30064492 C T REM1 Missense_Mutation p.R82C 0.29 deleterious(0) possibly_damaging(0.778) TCGA-BR-8680-01 20 30137889 30137889 T G HM13 Missense_Mutation p.V230G 0.32 deleterious(0) probably_damaging(0.975) TCGA-BR-8680-01 20 30193779 30193779 T C ID1 Intron 0.29 TCGA-BR-8680-01 20 30345249 30345249 A C TPX2 5'UTR 0.31 TCGA-BR-8680-01 20 30366672 30366672 G T TPX2 Missense_Mutation p.K313N 0.34 tolerated(1) probably_damaging(0.919) TCGA-BR-8680-01 20 30452790 30452790 G A DUSP15 Missense_Mutation p.R52C 0.42 tolerated(0.33) benign(0.412) TCGA-BR-8680-01 20 30510818 30510818 T C TTLL9 Missense_Mutation p.V209A 0.42 deleterious(0) probably_damaging(0.951) TCGA-BR-8680-01 20 30512815 30512815 G A TTLL9 Missense_Mutation p.R223H 0.40 deleterious(0) probably_damaging(0.996) TCGA-BR-8680-01 20 30522582 30522582 G A TTLL9 Missense_Mutation p.D299N 0.32 tolerated(0.2) benign(0.177) TCGA-BR-8680-01 20 30526969 30526969 C T TTLL9 Silent p.V381V 0.27 TCGA-BR-8680-01 20 30538170 30538170 T G PDRG1 Missense_Mutation p.K36N 0.25 deleterious(0) probably_damaging(0.993) TCGA-BR-8680-01 20 30919089 30919089 T G KIF3B Silent p.L737L 0.22 TCGA-BR-8680-01 20 3127807 3127807 T G FASTKD5 Missense_Mutation p.K637T 0.33 deleterious(0.05) benign(0.168) TCGA-BR-8680-01 20 31292274 31292274 C T COMMD7 Missense_Mutation p.E149K 0.29 deleterious(0) possibly_damaging(0.888) TCGA-BR-8680-01 20 31652621 31652621 C T BPIFB3 Silent p.G298G 0.26 TCGA-BR-8680-01 20 31656729 31656729 C T BPIFB3 Silent p.L367L 0.32 TCGA-BR-8680-01 20 31756955 31756955 C A BPIFA2 Missense_Mutation p.L2I 0.36 tolerated(0.05) possibly_damaging(0.471) TCGA-BR-8680-01 20 31760789 31760789 C T BPIFA2 Missense_Mutation p.A70V 0.27 tolerated(0.29) benign(0.145) TCGA-BR-8680-01 20 31829266 31829266 T G BPIFA1 Silent p.V219V 0.40 TCGA-BR-8680-01 20 31879790 31879790 A G BPIFB1 Missense_Mutation p.N198S 0.32 tolerated(1) benign(0.007) TCGA-BR-8680-01 20 3211414 3211414 G T SLC4A11 Missense_Mutation p.L459M 0.43 deleterious(0.03) probably_damaging(0.996) TCGA-BR-8680-01 20 32255772 32255772 A G ACTL10 Missense_Mutation p.T157A 0.33 deleterious(0.04) benign(0.001) TCGA-BR-8680-01 20 32371624 32371624 C A ZNF341 Missense_Mutation p.F595L 0.38 tolerated(0.67) benign(0.001) TCGA-BR-8680-01 20 32660006 32660006 C T RALY Silent p.F42F 0.16 TCGA-BR-8680-01 20 32677684 32677684 C T EIF2S2 Missense_Mutation p.R285Q 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-BR-8680-01 20 3275246 3275246 G A C20orf194 Missense_Mutation p.A683V 0.25 tolerated(0.34) benign(0.007) TCGA-BR-8680-01 20 3306889 3306889 A C C20orf194 Silent p.V381V 0.29 TCGA-BR-8680-01 20 3340185 3340185 G T C20orf194 Missense_Mutation p.S223Y 0.39 deleterious(0) probably_damaging(0.929) TCGA-BR-8680-01 20 33516680 33516680 C T GSS Missense_Mutation p.G459D 0.43 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 20 33703611 33703611 G A EDEM2 Silent p.F454F 0.33 TCGA-BR-8680-01 20 33868540 33868540 G A EIF6 Missense_Mutation p.R96W 0.39 deleterious(0) probably_damaging(0.931) TCGA-BR-8680-01 20 34054861 34054861 G A CEP250 Missense_Mutation p.R188Q 0.41 probably_damaging(0.999) TCGA-BR-8680-01 20 34099337 34099337 C T CEP250 Missense_Mutation p.A2404V 0.31 probably_damaging(0.94) TCGA-BR-8680-01 20 34206049 34206049 G A SPAG4 Silent p.E193E 0.28 TCGA-BR-8680-01 20 34220780 34220780 G A CPNE1 Silent p.I27I 0.35 TCGA-BR-8680-01 20 34241148 34241148 A G RBM12 Silent p.S699S 0.29 TCGA-BR-8680-01 20 34292287 34292287 T G RBM39 3'UTR 0.18 TCGA-BR-8680-01 20 35437145 35437145 A C SOGA1 Missense_Mutation p.L862R 0.47 deleterious(0) possibly_damaging(0.847) TCGA-BR-8680-01 20 35539642 35539642 C A SAMHD1 Nonsense_Mutation p.E417* 0.45 TCGA-BR-8680-01 20 36641180 36641180 T G TTI1 Missense_Mutation p.I347L 0.39 deleterious(0) benign(0.004) TCGA-BR-8680-01 20 36758717 36758717 C T TGM2 Silent p.P656P 0.23 TCGA-BR-8680-01 20 3677393 3677393 A G SIGLEC1 Silent p.G841G 0.25 TCGA-BR-8680-01 20 36932561 36932561 T G BPI 5'UTR 0.39 TCGA-BR-8680-01 20 36932692 36932692 G A BPI Missense_Mutation p.A27T 0.37 tolerated(0.08) benign(0.017) TCGA-BR-8680-01 20 37174905 37174905 G A RALGAPB Missense_Mutation p.A912T 0.42 tolerated(0.19) probably_damaging(0.999) TCGA-BR-8680-01 20 37383680 37383680 G A ACTR5 Missense_Mutation p.G286S 0.35 tolerated(0.29) benign(0.364) TCGA-BR-8680-01 20 37632517 37632517 A C DHX35 Missense_Mutation p.K326N 0.37 tolerated(0.26) possibly_damaging(0.685) TCGA-BR-8680-01 20 37647465 37647465 G A DHX35 Missense_Mutation p.R474H 0.38 tolerated(0.09) benign(0.003) TCGA-BR-8680-01 20 37652368 37652368 C T DHX35 Silent p.G543G 0.32 TCGA-BR-8680-01 20 39709828 39709828 T A TOP1 Missense_Mutation p.I152N 0.32 tolerated(0.22) benign(0.068) TCGA-BR-8680-01 20 39793708 39793708 A C PLCG1 Silent p.S451S 0.39 TCGA-BR-8680-01 20 39833469 39833469 C T ZHX3 Missense_Mutation p.A30T 0.33 tolerated(0.46) benign(0.002) TCGA-BR-8680-01 20 39833567 39833567 A G ZHX3 5'UTR 0.27 TCGA-BR-8680-01 20 39978806 39978806 G A LPIN3 Missense_Mutation p.V291M 0.33 tolerated(0.13) benign(0.018) TCGA-BR-8680-01 20 39986541 39986541 T G LPIN3 Missense_Mutation p.Y687D 0.35 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 20 39991292 39991292 C T EMILIN3 Missense_Mutation p.R306Q 0.50 tolerated(0.75) benign(0) TCGA-BR-8680-01 20 40713337 40713337 G A PTPRT Missense_Mutation p.T1374I 0.24 tolerated(0.1) benign(0.081) TCGA-BR-8680-01 20 40911144 40911144 G A PTPRT Missense_Mutation p.R721C 0.28 deleterious(0) probably_damaging(0.976) TCGA-BR-8680-01 20 41306583 41306583 C T PTPRT Missense_Mutation p.R359Q 0.39 tolerated(0.2) benign(0.435) TCGA-BR-8680-01 20 42331534 42331534 G A MYBL2 Silent p.S452S 0.24 TCGA-BR-8680-01 20 42680169 42680169 C T TOX2 Missense_Mutation p.S212L 0.29 tolerated(0.2) benign(0.225) TCGA-BR-8680-01 20 43057088 43057088 G A HNF4A Missense_Mutation p.G415R 0.23 tolerated_low_confidence(0.16) probably_damaging(1) TCGA-BR-8680-01 20 43940866 43940866 C T RBPJL Silent p.F150F 0.37 TCGA-BR-8680-01 20 44003970 44003970 A C TP53TG5 Silent p.V159V 0.06 TCGA-BR-8680-01 20 44180804 44180804 A C WFDC8 Missense_Mutation p.V196G 0.28 tolerated(0.09) benign(0.14) TCGA-BR-8680-01 20 44259601 44259601 G A WFDC10A Missense_Mutation p.A62T 0.22 deleterious(0.03) probably_damaging(0.945) TCGA-BR-8680-01 20 44512035 44512035 C A ZSWIM1 Missense_Mutation p.F268L 0.33 tolerated(0.67) benign(0.003) TCGA-BR-8680-01 20 44569552 44569552 G A PCIF1 Silent p.Q164Q 0.31 TCGA-BR-8680-01 20 45129982 45129982 G A ZNF334 Missense_Mutation p.R666C 0.34 tolerated(0.22) benign(0.019) TCGA-BR-8680-01 20 45131024 45131024 C T ZNF334 Silent p.E318E 0.33 TCGA-BR-8680-01 20 45354909 45354909 G A SLC2A10 Missense_Mutation p.A412T 0.42 tolerated(0.72) benign(0.038) TCGA-BR-8680-01 20 45912344 45912344 T G ZMYND8 Missense_Mutation p.K285Q 0.39 deleterious(0.02) benign(0.078) TCGA-BR-8680-01 20 46264088 46264088 A G NCOA3 Missense_Mutation p.N379D 0.27 deleterious(0.02) benign(0.418) TCGA-BR-8680-01 20 4705395 4705395 C T PRND Silent p.L66L 0.49 TCGA-BR-8680-01 20 47588912 47588912 C A ARFGEF2 Missense_Mutation p.S492Y 0.33 deleterious(0) probably_damaging(0.996) TCGA-BR-8680-01 20 47734395 47734395 G T STAU1 Silent p.I476I 0.40 TCGA-BR-8680-01 20 47782660 47782660 G A STAU1 Missense_Mutation p.L27F 0.31 deleterious_low_confidence(0.03) benign(0.012) TCGA-BR-8680-01 20 47851485 47851485 G T DDX27 Missense_Mutation p.R460S 0.26 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 20 47886956 47886956 G T ZNFX1 Missense_Mutation p.L465I 0.33 tolerated(0.09) probably_damaging(0.965) TCGA-BR-8680-01 20 480539 480539 A C CSNK2A1 Missense_Mutation p.L85V 0.34 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 20 49626348 49626348 G A KCNG1 Silent p.F176F 0.34 TCGA-BR-8680-01 20 49626531 49626531 G T KCNG1 Missense_Mutation p.F115L 0.43 deleterious(0) possibly_damaging(0.78) TCGA-BR-8680-01 20 52199171 52199171 C T ZNF217 Silent p.L65L 0.34 TCGA-BR-8680-01 20 52773812 52773812 T C CYP24A1 Missense_Mutation p.D484G 0.34 deleterious(0.01) benign(0.188) TCGA-BR-8680-01 20 53171512 53171512 G A DOK5 Missense_Mutation p.S36N 0.32 deleterious(0) probably_damaging(0.993) TCGA-BR-8680-01 20 55027827 55027827 A G CASS4 Missense_Mutation p.E532G 0.33 tolerated(0.08) benign(0.097) TCGA-BR-8680-01 20 55108530 55108530 C T FAM209B Missense_Mutation p.R45W 0.36 tolerated(0.15) possibly_damaging(0.796) TCGA-BR-8680-01 20 55108640 55108640 G T FAM209B Missense_Mutation p.K81N 0.28 deleterious(0.02) benign(0.011) TCGA-BR-8680-01 20 55111574 55111574 G T FAM209B 3'UTR 0.50 TCGA-BR-8680-01 20 55758796 55758796 G A BMP7 Missense_Mutation p.R314W 0.37 deleterious(0) possibly_damaging(0.849) TCGA-BR-8680-01 20 55840835 55840835 C T BMP7 Missense_Mutation p.G115D 0.37 tolerated(0.13) benign(0.026) TCGA-BR-8680-01 20 55904928 55904928 C T SPO11 Missense_Mutation p.A2V 0.39 deleterious_low_confidence(0) possibly_damaging(0.898) TCGA-BR-8680-01 20 56139347 56139347 G A PCK1 Missense_Mutation p.E362K 0.32 tolerated(0.83) benign(0.02) TCGA-BR-8680-01 20 57273784 57273784 C T NPEPL1 Silent p.I184I 0.32 TCGA-BR-8680-01 20 57428544 57428544 G T GNAS Missense_Mutation p.R75I 0.43 tolerated_low_confidence(0.07) unknown(0) TCGA-BR-8680-01 20 57429085 57429085 C T GNAS Silent p.F255F 0.38 TCGA-BR-8680-01 20 57568761 57568761 G A NELFCD Missense_Mutation p.R526Q 0.38 tolerated(0.09) benign(0.272) TCGA-BR-8680-01 20 58411601 58411601 G T PHACTR3 Missense_Mutation p.R457I 0.32 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 20 58452530 58452530 T G SYCP2 Missense_Mutation p.K1020N 0.34 tolerated(0.3) benign(0.153) TCGA-BR-8680-01 20 58467111 58467111 A G SYCP2 Silent p.S766S 0.29 TCGA-BR-8680-01 20 58476794 58476794 C A SYCP2 Nonsense_Mutation p.E369* 0.25 TCGA-BR-8680-01 20 58544061 58544061 C A CDH26 Missense_Mutation p.L37I 0.35 tolerated(0.08) possibly_damaging(0.724) TCGA-BR-8680-01 20 5904101 5904101 G T CHGB Missense_Mutation p.E437D 0.30 tolerated(0.15) possibly_damaging(0.738) TCGA-BR-8680-01 20 5943947 5943947 T C MCM8 Missense_Mutation p.S273P 0.38 deleterious(0.01) possibly_damaging(0.866) TCGA-BR-8680-01 20 60503305 60503305 A G CDH4 Missense_Mutation p.D610G 0.28 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 20 60776191 60776191 C T MTG2 3'UTR 0.67 TCGA-BR-8680-01 20 61299452 61299452 G T SLCO4A1 Missense_Mutation p.R576I 0.42 tolerated(0.3) benign(0.392) TCGA-BR-8680-01 20 61491643 61491643 C T TCFL5 Missense_Mutation p.R222Q 0.32 tolerated(0.06) probably_damaging(0.99) TCGA-BR-8680-01 20 61513394 61513394 G A DIDO1 Missense_Mutation p.S1305L 0.32 benign(0.17) TCGA-BR-8680-01 20 61936897 61936897 C T COL20A1 Missense_Mutation p.R108W 0.47 deleterious(0) probably_damaging(0.915) TCGA-BR-8680-01 20 61981912 61981912 G A CHRNA4 Missense_Mutation p.S284L 0.38 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 20 62572374 62572374 C T UCKL1 Missense_Mutation p.E349K 0.21 deleterious(0.01) benign(0.438) TCGA-BR-8680-01 20 62595509 62595509 G A ZNF512B Silent p.G465G 0.32 TCGA-BR-8680-01 20 62624781 62624781 A C PRPF6 Missense_Mutation p.E127D 0.36 tolerated(0.09) benign(0.072) TCGA-BR-8680-01 20 62669793 62669793 C T ZNF512B Intron 0.42 TCGA-BR-8680-01 20 62831255 62831255 G T MYT1 Missense_Mutation p.E22D 0.60 benign(0.003) TCGA-BR-8680-01 20 62837075 62837075 G T MYT1 Nonsense_Mutation p.E107* 0.75 TCGA-BR-8680-01 20 8707987 8707987 C T PLCB1 Silent p.F570F 0.27 TCGA-BR-8680-01 20 8862337 8862337 C T PLCB1 Silent p.F1164F 0.37 TCGA-BR-8680-01 20 9370547 9370547 G A PLCB4 Missense_Mutation p.E394K 0.25 deleterious(0) benign(0.22) TCGA-BR-8680-01 20 9402103 9402103 C T PLCB4 Missense_Mutation p.R760W 0.31 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 21 10862772 10862772 T G IGHV1OR21-1 Missense_Mutation p.L23R 0.10 deleterious(0) probably_damaging(0.998) TCGA-BR-8680-01 21 10906783 10906783 A C TPTE 3'UTR 0.11 TCGA-BR-8680-01 21 10951415 10951415 A C TPTE Silent p.V99V 0.16 TCGA-BR-8680-01 21 10998235 10998235 T G TPTE RNA 0.15 TCGA-BR-8680-01 21 11020823 11020823 A G BAGE2 3'Flank 0.15 TCGA-BR-8680-01 21 11049620 11049620 C T BAGE2 Intron 0.05 TCGA-BR-8680-01 21 15352252 15352252 A G ANKRD20A11P 5'Flank 0.60 TCGA-BR-8680-01 21 15893519 15893519 G A SAMSN1 Silent p.F95F 0.39 TCGA-BR-8680-01 21 16337265 16337265 T G NRIP1 Missense_Mutation p.E1083D 0.36 tolerated_low_confidence(0.06) benign(0.01) TCGA-BR-8680-01 21 18966407 18966407 G A BTG3 3'UTR 0.35 TCGA-BR-8680-01 21 19653432 19653432 T G TMPRSS15 Missense_Mutation p.N865H 0.36 tolerated(0.2) benign(0.207) TCGA-BR-8680-01 21 19670096 19670096 A G TMPRSS15 Missense_Mutation p.V739A 0.31 tolerated(0.13) possibly_damaging(0.524) TCGA-BR-8680-01 21 22881337 22881337 G A NCAM2 Missense_Mutation p.G748D 0.27 deleterious(0) possibly_damaging(0.543) TCGA-BR-8680-01 21 22910240 22910240 G A NCAM2 Missense_Mutation p.D826N 0.60 tolerated(0.25) probably_damaging(0.998) TCGA-BR-8680-01 21 27096989 27096989 C T ATP5J Splice_Site p.X105_splice 0.32 TCGA-BR-8680-01 21 28296687 28296687 C T ADAMTS5 Silent p.T826T 0.34 TCGA-BR-8680-01 21 28327064 28327064 C T ADAMTS5 Missense_Mutation p.E411K 0.29 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 21 30419571 30419571 G A USP16 Missense_Mutation p.R647Q 0.42 tolerated(0.12) benign(0.025) TCGA-BR-8680-01 21 30422460 30422460 A C USP16 Missense_Mutation p.E718D 0.43 tolerated(0.37) benign(0.162) TCGA-BR-8680-01 21 30925894 30925894 G T GRIK1 Silent p.S913S 0.29 TCGA-BR-8680-01 21 31588310 31588310 C T CLDN8 5'UTR 0.30 TCGA-BR-8680-01 21 31654595 31654595 C T KRTAP24-1 Missense_Mutation p.R219Q 0.32 tolerated(0.66) benign(0) TCGA-BR-8680-01 21 31709589 31709589 G A KRTAP27-1 Missense_Mutation p.P133L 0.26 deleterious(0) benign(0.273) TCGA-BR-8680-01 21 31768675 31768675 C A KRTAP13-1 Missense_Mutation p.P91T 0.31 deleterious(0.02) probably_damaging(0.982) TCGA-BR-8680-01 21 31863876 31863876 G A KRTAP19-3 3'UTR 0.32 TCGA-BR-8680-01 21 31874354 31874354 C T KRTAP19-5 Missense_Mutation p.D19N 0.31 tolerated_low_confidence(0.36) unknown(0) TCGA-BR-8680-01 21 32519234 32519234 C A TIAM1 Missense_Mutation p.V1152F 0.22 deleterious(0) probably_damaging(0.992) TCGA-BR-8680-01 21 32559358 32559358 T C TIAM1 Missense_Mutation p.Y874C 0.36 deleterious(0) possibly_damaging(0.584) TCGA-BR-8680-01 21 33068467 33068467 G A SCAF4 Missense_Mutation p.P343S 0.33 possibly_damaging(0.724) TCGA-BR-8680-01 21 34030180 34030180 A C SYNJ1 Silent p.V808V 0.23 TCGA-BR-8680-01 21 34058149 34058149 T G SYNJ1 Missense_Mutation p.K382Q 0.41 deleterious(0.01) benign(0.169) TCGA-BR-8680-01 21 34132150 34132150 T G PAXBP1 Missense_Mutation p.K377N 0.34 tolerated(0.3) benign(0.337) TCGA-BR-8680-01 21 34652088 34652088 A C IL10RB Missense_Mutation p.E121D 0.31 tolerated(0.06) benign(0.024) TCGA-BR-8680-01 21 34725189 34725189 C T IFNAR1 Silent p.D423D 0.32 TCGA-BR-8680-01 21 34922384 34922384 T A SON Missense_Mutation p.S283T 0.29 benign(0.153) TCGA-BR-8680-01 21 34922611 34922611 G A SON Silent p.P358P 0.36 TCGA-BR-8680-01 21 34923451 34923451 G A SON Silent p.A638A 0.37 TCGA-BR-8680-01 21 34931566 34931566 G T SON Missense_Mutation p.D2118Y 0.50 unknown(0) TCGA-BR-8680-01 21 34932295 34932295 A C SON Intron 0.21 TCGA-BR-8680-01 21 34962116 34962116 G A CRYZL1 3'UTR 0.35 TCGA-BR-8680-01 21 35127704 35127704 T C ITSN1 Splice_Site p.X242_splice 0.25 TCGA-BR-8680-01 21 35260458 35260458 T G ITSN1 Missense_Mutation p.F1674V 0.46 deleterious(0) probably_damaging(0.997) TCGA-BR-8680-01 21 35467556 35467556 T C SLC5A3 Missense_Mutation p.V20A 0.33 deleterious(0) probably_damaging(0.936) TCGA-BR-8680-01 21 37093076 37093076 C A MIR802 RNA 0.18 TCGA-BR-8680-01 21 37505070 37505070 T G CBR3 5'Flank 0.45 TCGA-BR-8680-01 21 37603319 37603319 G A DOPEY2 Missense_Mutation p.R746H 0.35 tolerated(0.06) benign(0.005) TCGA-BR-8680-01 21 37664487 37664487 C A DOPEY2 Missense_Mutation p.P2201T 0.34 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 21 37741635 37741635 G A MORC3 Missense_Mutation p.D657N 0.28 tolerated(0.4) benign(0.007) TCGA-BR-8680-01 21 38494187 38494187 A C TTC3 Missense_Mutation p.K324T 0.35 deleterious(0.01) benign(0.007) TCGA-BR-8680-01 21 38501357 38501357 A C TTC3 Missense_Mutation p.K451T 0.29 deleterious(0.03) possibly_damaging(0.77) TCGA-BR-8680-01 21 38559387 38559387 T C TTC3 Missense_Mutation p.Y1622H 0.32 tolerated(0.48) benign(0) TCGA-BR-8680-01 21 38853084 38853084 C T DYRK1A Missense_Mutation p.R158C 0.27 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 21 38862486 38862486 A C DYRK1A Missense_Mutation p.K225T 0.32 tolerated(0.13) possibly_damaging(0.721) TCGA-BR-8680-01 21 38997769 38997769 G A KCNJ6 Nonsense_Mutation p.R322* 0.31 TCGA-BR-8680-01 21 39671201 39671201 C T KCNJ15 Silent p.I6I 0.38 TCGA-BR-8680-01 21 39755649 39755649 G A ERG Silent p.Y379Y 0.31 TCGA-BR-8680-01 21 39775557 39775557 C T ERG Missense_Mutation p.V162I 0.29 tolerated(0.59) benign(0.13) TCGA-BR-8680-01 21 40189001 40189001 A G ETS2 Missense_Mutation p.N192S 0.33 tolerated(1) benign(0.006) TCGA-BR-8680-01 21 40783699 40783699 G A LCA5L Silent p.N335N 0.33 TCGA-BR-8680-01 21 40800375 40800375 G T LCA5L Missense_Mutation p.F15L 0.32 tolerated(0.25) benign(0.011) TCGA-BR-8680-01 21 40834341 40834341 C T SH3BGR Missense_Mutation p.A92V 0.25 deleterious(0.01) benign(0.363) TCGA-BR-8680-01 21 41559880 41559880 A C DSCAM Missense_Mutation p.F863C 0.39 deleterious(0) probably_damaging(0.996) TCGA-BR-8680-01 21 41684041 41684041 C T DSCAM Missense_Mutation p.A677T 0.36 tolerated(1) benign(0.024) TCGA-BR-8680-01 21 41684283 41684283 G A DSCAM Missense_Mutation p.P596L 0.36 deleterious(0) probably_damaging(0.989) TCGA-BR-8680-01 21 42617914 42617914 A G BACE2 Missense_Mutation p.D303G 0.35 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 21 43531245 43531245 C T UMODL1 Missense_Mutation p.A638V 0.40 tolerated(0.09) benign(0.135) TCGA-BR-8680-01 21 43533907 43533907 G T UMODL1 Nonsense_Mutation p.E905* 0.26 TCGA-BR-8680-01 21 43702514 43702514 T C ABCG1 Missense_Mutation p.F240S 0.39 deleterious(0) probably_damaging(0.961) TCGA-BR-8680-01 21 43716283 43716283 C T ABCG1 Silent p.F606F 0.30 TCGA-BR-8680-01 21 43862610 43862610 T G UBASH3A Missense_Mutation p.F512C 0.41 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 21 44444988 44444988 A G PKNOX1 Missense_Mutation p.Y286C 0.35 deleterious(0) possibly_damaging(0.879) TCGA-BR-8680-01 21 44450226 44450226 G A PKNOX1 3'UTR 0.40 TCGA-BR-8680-01 21 44488638 44488638 G A CBS Silent p.F99F 0.33 TCGA-BR-8680-01 21 45504019 45504019 C T TRAPPC10 Missense_Mutation p.T752M 0.27 tolerated(0.08) possibly_damaging(0.858) TCGA-BR-8680-01 21 45540313 45540313 G A PWP2 Missense_Mutation p.A425T 0.33 tolerated(0.48) benign(0.005) TCGA-BR-8680-01 21 45877213 45877213 A G LRRC3 Missense_Mutation p.N229S 0.05 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 21 45959162 45959162 G T KRTAP10-1 3'UTR 0.28 TCGA-BR-8680-01 21 45994370 45994370 G T KRTAP10-4 Missense_Mutation p.E245D 0.27 tolerated(0.56) unknown(0) TCGA-BR-8680-01 21 46047149 46047149 G A KRTAP10-9 Missense_Mutation p.D21N 0.29 tolerated(0.19) unknown(0) TCGA-BR-8680-01 21 46047218 46047218 A G KRTAP10-9 Missense_Mutation p.T44A 0.40 deleterious(0.05) unknown(0) TCGA-BR-8680-01 21 46074227 46074227 C A KRTAP12-4 Missense_Mutation p.R102I 0.35 deleterious(0) possibly_damaging(0.883) TCGA-BR-8680-01 21 46078099 46078099 C A KRTAP12-3 Missense_Mutation p.P68H 0.25 deleterious(0) benign(0.286) TCGA-BR-8680-01 21 46309280 46309280 G A ITGB2 Silent p.C596C 0.46 TCGA-BR-8680-01 21 46321485 46321485 G A ITGB2 Silent p.V221V 0.39 TCGA-BR-8680-01 21 46330639 46330639 C T ITGB2 Splice_Site p.X20_splice 0.39 TCGA-BR-8680-01 21 46624478 46624478 T C ADARB1 Missense_Mutation p.V565A 0.24 deleterious(0.02) possibly_damaging(0.78) TCGA-BR-8680-01 21 46896386 46896386 C T COL18A1 Missense_Mutation p.S487L 0.21 unknown(0) TCGA-BR-8680-01 21 47359992 47359992 C T PCBP3 Nonsense_Mutation p.R320* 0.35 TCGA-BR-8680-01 21 47424005 47424005 G A COL6A1 3'UTR 0.34 TCGA-BR-8680-01 21 47704119 47704119 T G MCM3AP Missense_Mutation p.K361T 0.29 deleterious(0.03) benign(0.329) TCGA-BR-8680-01 21 47706911 47706911 G A YBEY Silent p.R28R 0.41 TCGA-BR-8680-01 21 47848442 47848442 G A PCNT Missense_Mutation p.R2543H 0.36 benign(0.001) TCGA-BR-8680-01 22 17071789 17071789 T G CCT8L2 Missense_Mutation p.K551T 0.26 tolerated_low_confidence(0.38) benign(0.001) TCGA-BR-8680-01 22 17447013 17447013 C T GAB4 Missense_Mutation p.R422H 0.33 deleterious(0.02) benign(0) TCGA-BR-8680-01 22 17447056 17447056 C A GAB4 Missense_Mutation p.D408Y 0.32 tolerated(0.87) benign(0.29) TCGA-BR-8680-01 22 17662438 17662438 T G CECR1 Missense_Mutation p.N491H 0.30 tolerated(0.08) benign(0.061) TCGA-BR-8680-01 22 17662442 17662442 C T CECR1 Silent p.E489E 0.31 TCGA-BR-8680-01 22 17976436 17976436 C T CECR2 Missense_Mutation p.P34S 0.33 tolerated(0.28) benign(0.208) TCGA-BR-8680-01 22 18028975 18028975 C T CECR2 Missense_Mutation p.S1312L 0.26 deleterious_low_confidence(0.03) possibly_damaging(0.843) TCGA-BR-8680-01 22 18348745 18348745 C T MICAL3 Missense_Mutation p.R821Q 0.23 probably_damaging(0.999) TCGA-BR-8680-01 22 19026632 19026632 C T DGCR2 Missense_Mutation p.D467N 0.38 tolerated_low_confidence(0.3) possibly_damaging(0.517) TCGA-BR-8680-01 22 19170998 19170998 G A CLTCL1 Missense_Mutation p.R1578C 0.35 deleterious(0) benign(0.311) TCGA-BR-8680-01 22 19203720 19203720 G A CLTCL1 Missense_Mutation p.S989L 0.25 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 22 19211552 19211552 G A CLTCL1 Silent p.I718I 0.49 TCGA-BR-8680-01 22 19221116 19221116 C T CLTCL1 Silent p.Q399Q 0.12 TCGA-BR-8680-01 22 19511134 19511134 C A CLDN5 Missense_Mutation p.K300N 0.09 deleterious_low_confidence(0.01) benign(0.347) TCGA-BR-8680-01 22 20024483 20024483 C T TANGO2 Intron 0.32 TCGA-BR-8680-01 22 20458539 20458539 C T RIMBP3 Silent p.G921G 0.31 TCGA-BR-8680-01 22 20761251 20761251 G A ZNF74 Missense_Mutation p.R643Q 0.40 tolerated_low_confidence(0.17) benign(0.03) TCGA-BR-8680-01 22 21075682 21075682 G A PI4KA Silent p.L1674L 0.33 TCGA-BR-8680-01 22 21133888 21133888 C T SERPIND1 Silent p.V96V 0.49 TCGA-BR-8680-01 22 21288167 21288167 G T CRKL Missense_Mutation p.D138Y 0.41 deleterious(0) probably_damaging(0.993) TCGA-BR-8680-01 22 21327599 21327599 A C AIFM3 Missense_Mutation p.E12A 0.29 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-BR-8680-01 22 21372283 21372283 G T P2RX6 Missense_Mutation p.E107D 0.29 deleterious(0.05) probably_damaging(0.916) TCGA-BR-8680-01 22 21989197 21989197 A C CCDC116 Missense_Mutation p.Q282P 0.37 deleterious(0.01) probably_damaging(0.988) TCGA-BR-8680-01 22 22749745 22749745 G A IGLV7-43 Missense_Mutation p.G90D 0.27 tolerated(0.26) benign(0.057) TCGA-BR-8680-01 22 22786594 22786594 C T IGLV1-36 Silent p.I48I 0.36 TCGA-BR-8680-01 22 22842885 22842885 T C ZNF280B Missense_Mutation p.N280S 0.35 tolerated(0.41) benign(0.023) TCGA-BR-8680-01 22 22892500 22892500 G A PRAME Nonsense_Mutation p.R201* 0.30 TCGA-BR-8680-01 22 23029638 23029638 C T IGLV3-25 Silent p.F80F 0.31 TCGA-BR-8680-01 22 23055532 23055532 C T IGLV3-21 Silent p.V65V 0.49 TCGA-BR-8680-01 22 23154619 23154619 T C IGLV3-10 Missense_Mutation p.V63A 0.40 tolerated(0.06) benign(0.257) TCGA-BR-8680-01 22 23613760 23613760 G A BCR Silent p.T634T 0.35 TCGA-BR-8680-01 22 24456571 24456571 G A CABIN1 Silent p.P528P 0.34 TCGA-BR-8680-01 22 24468452 24468452 C T CABIN1 Missense_Mutation p.A875V 0.21 tolerated(0.47) benign(0.001) TCGA-BR-8680-01 22 24472128 24472128 G A CABIN1 Silent p.E881E 0.34 TCGA-BR-8680-01 22 24616052 24616052 C A GGT5 Missense_Mutation p.Q550H 0.38 tolerated(1) benign(0.052) TCGA-BR-8680-01 22 24837105 24837105 G A ADORA2A Missense_Mutation p.R296H 0.36 deleterious(0.02) possibly_damaging(0.719) TCGA-BR-8680-01 22 25240909 25240909 G A SGSM1 Missense_Mutation p.E37K 0.38 deleterious(0) possibly_damaging(0.895) TCGA-BR-8680-01 22 25282634 25282634 C T SGSM1 Missense_Mutation p.A625V 0.50 tolerated(0.08) benign(0.011) TCGA-BR-8680-01 22 25756095 25756095 C T LRP5L 5'UTR 0.22 TCGA-BR-8680-01 22 26159197 26159197 G T MYO18B Splice_Site p.X14_splice 0.31 TCGA-BR-8680-01 22 26747069 26747069 C T SEZ6L Missense_Mutation p.S820L 0.36 deleterious(0.01) probably_damaging(0.969) TCGA-BR-8680-01 22 26747191 26747191 C T SEZ6L Missense_Mutation p.R861C 0.35 deleterious(0) possibly_damaging(0.896) TCGA-BR-8680-01 22 29177000 29177000 C A CCDC117 Missense_Mutation p.L102I 0.30 deleterious(0.01) possibly_damaging(0.801) TCGA-BR-8680-01 22 29457823 29457823 G A C22orf31 5'UTR 0.18 TCGA-BR-8680-01 22 29754901 29754901 G A AP1B1 Silent p.I113I 0.33 TCGA-BR-8680-01 22 29763239 29763239 C T AP1B1 5'UTR 0.13 TCGA-BR-8680-01 22 29908111 29908111 C T THOC5 Missense_Mutation p.A566T 0.31 tolerated(0.23) benign(0.015) TCGA-BR-8680-01 22 30374969 30374969 C T MTMR3 Silent p.G46G 0.35 TCGA-BR-8680-01 22 30891949 30891949 A C SEC14L4 Missense_Mutation p.F47C 0.32 deleterious(0) probably_damaging(0.995) TCGA-BR-8680-01 22 31484584 31484584 A G SMTN Missense_Mutation p.T96A 0.33 deleterious(0.01) probably_damaging(0.997) TCGA-BR-8680-01 22 31489749 31489749 G A SMTN Intron 0.44 TCGA-BR-8680-01 22 31521798 31521798 G A INPP5J Intron 0.27 TCGA-BR-8680-01 22 31884627 31884627 G A EIF4ENIF1 Silent p.C26C 0.38 TCGA-BR-8680-01 22 31998258 31998258 A C SFI1 Missense_Mutation p.E535D 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-BR-8680-01 22 32352264 32352264 G A YWHAH Missense_Mutation p.E76K 0.33 deleterious_low_confidence(0.04) benign(0.023) TCGA-BR-8680-01 22 32754255 32754255 C T RFPL3 Missense_Mutation p.S66L 0.30 tolerated(0.06) probably_damaging(0.998) TCGA-BR-8680-01 22 32937665 32937665 A G SYN3 Missense_Mutation p.I270T 0.29 deleterious(0) unknown(0) TCGA-BR-8680-01 22 33376685 33376685 G A SYN3 Missense_Mutation p.S105L 0.35 deleterious(0.01) unknown(0) TCGA-BR-8680-01 22 35719555 35719555 C T TOM1 Missense_Mutation p.R145W 0.32 deleterious(0) probably_damaging(0.996) TCGA-BR-8680-01 22 35808654 35808654 C A MCM5 Silent p.L357L 0.40 TCGA-BR-8680-01 22 36745002 36745002 C T MYH9 Missense_Mutation p.E94K 0.36 probably_damaging(1) TCGA-BR-8680-01 22 36983540 36983540 G A CACNG2 Silent p.Y89Y 0.44 TCGA-BR-8680-01 22 37154255 37154255 G A IFT27 3'UTR 0.37 TCGA-BR-8680-01 22 37318260 37318260 C T CSF2RB Missense_Mutation p.A4V 0.36 tolerated(0.54) benign(0.005) TCGA-BR-8680-01 22 37499365 37499365 A G TMPRSS6 Silent p.C40C 0.28 TCGA-BR-8680-01 22 37533707 37533707 C T IL2RB Missense_Mutation p.E153K 0.39 tolerated(0.86) benign(0) TCGA-BR-8680-01 22 37769204 37769204 C T ELFN2 Missense_Mutation p.A791T 0.22 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 22 37769767 37769767 G A ELFN2 Missense_Mutation p.S603L 0.54 deleterious(0) possibly_damaging(0.815) TCGA-BR-8680-01 22 38097437 38097437 G A TRIOBP Missense_Mutation p.R22H 0.19 tolerated_low_confidence(0.07) benign(0.072) TCGA-BR-8680-01 22 38228656 38228656 A G ANKRD54 Silent p.S272S 0.29 TCGA-BR-8680-01 22 38340078 38340078 G A C22orf23 3'UTR 0.30 TCGA-BR-8680-01 22 38696819 38696819 C T CSNK1E Missense_Mutation p.A159T 0.44 tolerated_low_confidence(0.35) benign(0.026) TCGA-BR-8680-01 22 38882012 38882012 C A DDX17 Missense_Mutation p.M708I 0.31 tolerated_low_confidence(0.1) benign(0.001) TCGA-BR-8680-01 22 38964307 38964307 G T DMC1 Intron 0.36 TCGA-BR-8680-01 22 39096140 39096140 G T JOSD1 5'UTR 0.50 TCGA-BR-8680-01 22 39908025 39908025 G A MIEF1 Missense_Mutation p.D106N 0.28 tolerated(0.13) benign(0.08) TCGA-BR-8680-01 22 40055521 40055521 A G CACNA1I Missense_Mutation p.D805G 0.20 deleterious(0) benign(0.213) TCGA-BR-8680-01 22 40365499 40365499 C T GRAP2 Missense_Mutation p.R259W 0.37 deleterious(0.01) benign(0.086) TCGA-BR-8680-01 22 40661898 40661898 C T TNRC6B Missense_Mutation p.A555V 0.09 tolerated(0.31) probably_damaging(0.995) TCGA-BR-8680-01 22 40662421 40662421 T G TNRC6B Missense_Mutation p.D729E 0.21 tolerated(0.7) benign(0.012) TCGA-BR-8680-01 22 40802123 40802123 G A SGSM3 Missense_Mutation p.A286T 0.41 deleterious(0.02) benign(0.377) TCGA-BR-8680-01 22 40805350 40805350 C T SGSM3 Silent p.G695G 0.37 TCGA-BR-8680-01 22 40814412 40814412 T C MKL1 Missense_Mutation p.D677G 0.27 tolerated(0.11) probably_damaging(0.98) TCGA-BR-8680-01 22 40819672 40819672 C T MKL1 Silent p.P165P 0.25 TCGA-BR-8680-01 22 41574128 41574128 C T EP300 Missense_Mutation p.A2138V 0.42 possibly_damaging(0.599) TCGA-BR-8680-01 22 41660674 41660674 G A RANGAP1 Silent p.G158G 0.24 TCGA-BR-8680-01 22 42095614 42095614 C T MEI1 Silent p.F24F 0.33 TCGA-BR-8680-01 22 42377818 42377818 C T SEPT3 Silent p.F60F 0.44 TCGA-BR-8680-01 22 42609814 42609814 T G TCF20 Missense_Mutation p.N500H 0.31 probably_damaging(0.999) TCGA-BR-8680-01 22 43289591 43289591 C T PACSIN2 Missense_Mutation p.R30Q 0.38 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 22 43616481 43616481 G A SCUBE1 Silent p.I554I 0.28 TCGA-BR-8680-01 22 43619155 43619155 G A SCUBE1 Silent p.G425G 0.42 TCGA-BR-8680-01 22 44067870 44067870 C T EFCAB6 Silent p.T541T 0.36 TCGA-BR-8680-01 22 44364687 44364687 A G SAMM50 Missense_Mutation p.D104G 0.33 deleterious(0) possibly_damaging(0.908) TCGA-BR-8680-01 22 46327148 46327148 C T WNT7B Missense_Mutation p.D134N 0.26 deleterious(0.01) probably_damaging(0.969) TCGA-BR-8680-01 22 46614182 46614182 G A PPARA Missense_Mutation p.R131Q 0.50 tolerated(0.3) possibly_damaging(0.707) TCGA-BR-8680-01 22 46653760 46653760 T G PKDREJ Missense_Mutation p.E1820D 0.33 tolerated(0.11) benign(0.304) TCGA-BR-8680-01 22 46653808 46653808 T G PKDREJ Missense_Mutation p.K1804N 0.35 deleterious(0) probably_damaging(0.983) TCGA-BR-8680-01 22 46656446 46656446 G A PKDREJ Missense_Mutation p.S925L 0.35 tolerated(0.17) benign(0.021) TCGA-BR-8680-01 22 46760630 46760630 T C CELSR1 Missense_Mutation p.D2853G 0.27 tolerated(0.05) benign(0.128) TCGA-BR-8680-01 22 46794454 46794454 G T CELSR1 Silent p.V1831V 0.40 TCGA-BR-8680-01 22 47022799 47022799 G A GRAMD4 Missense_Mutation p.E35K 0.39 deleterious(0.01) benign(0.212) TCGA-BR-8680-01 22 50718432 50718432 A G PLXNB2 Splice_Site p.X1414_splice 0.29 TCGA-BR-8680-01 22 50885548 50885548 G T SBF1 3'UTR 0.35 TCGA-BR-8680-01 22 50900836 50900836 G A SBF1 Missense_Mutation p.R732C 0.41 deleterious(0) probably_damaging(0.984) TCGA-BR-8680-01 22 50927709 50927709 T C MIOX Missense_Mutation p.S191P 0.23 deleterious(0.01) probably_damaging(0.997) TCGA-BR-8680-01 2 100009490 100009490 G T EIF5B Missense_Mutation p.D937Y 0.34 probably_damaging(0.992) TCGA-BR-8680-01 2 100011005 100011005 A C EIF5B Missense_Mutation p.K1016Q 0.33 probably_damaging(0.982) TCGA-BR-8680-01 2 100037985 100037985 T G REV1 Missense_Mutation p.K603Q 0.31 tolerated(0.24) benign(0.035) TCGA-BR-8680-01 2 100181988 100181988 G T AFF3 Missense_Mutation p.S1052Y 0.08 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 2 100209899 100209899 A C AFF3 Missense_Mutation p.F767V 0.32 tolerated(0.14) possibly_damaging(0.545) TCGA-BR-8680-01 2 10045058 10045058 T G TAF1B Missense_Mutation p.F293C 0.40 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 2 101549440 101549440 G T NPAS2 Nonsense_Mutation p.E84* 0.32 TCGA-BR-8680-01 2 102456429 102456429 C T MAP4K4 Missense_Mutation p.R308C 0.20 deleterious_low_confidence(0) unknown(0) TCGA-BR-8680-01 2 102636172 102636172 G A IL1R2 Missense_Mutation p.D196N 0.32 tolerated(1) benign(0.002) TCGA-BR-8680-01 2 103006646 103006646 A G IL18R1 Silent p.R360R 0.34 TCGA-BR-8680-01 2 103053710 103053710 C T IL18RAP Silent p.I206I 0.34 TCGA-BR-8680-01 2 103142801 103142801 C A SLC9A4 Missense_Mutation p.F678L 0.38 tolerated(0.65) benign(0.002) TCGA-BR-8680-01 2 103281693 103281693 G A SLC9A2 Silent p.A296A 0.35 TCGA-BR-8680-01 2 103431205 103431205 A C TMEM182 Splice_Site p.X157_splice 0.25 TCGA-BR-8680-01 2 105915107 105915107 C T TGFBRAP1 Silent p.E248E 0.36 TCGA-BR-8680-01 2 107049441 107049441 C A RGPD3 Missense_Mutation p.D807Y 0.31 deleterious(0) benign(0.059) TCGA-BR-8680-01 2 107049579 107049579 G A RGPD3 Missense_Mutation p.P790S 0.32 deleterious(0) benign(0.351) TCGA-BR-8680-01 2 107050701 107050701 G T RGPD3 Missense_Mutation p.L730I 0.27 tolerated(0.51) benign(0.025) TCGA-BR-8680-01 2 107450509 107450509 G A ST6GAL2 Missense_Mutation p.S346L 0.30 probably_damaging(1) TCGA-BR-8680-01 2 108487346 108487346 T G RGPD4 Missense_Mutation p.I962M 0.36 deleterious(0.03) benign(0.243) TCGA-BR-8680-01 2 108626988 108626988 A G SLC5A7 Missense_Mutation p.I472V 0.32 tolerated(0.81) benign(0.001) TCGA-BR-8680-01 2 108875197 108875197 C T SULT1C3 Silent p.G178G 0.38 TCGA-BR-8680-01 2 109086173 109086173 G T GCC2 Nonsense_Mutation p.E130* 0.32 TCGA-BR-8680-01 2 109087388 109087388 G A GCC2 Missense_Mutation p.E535K 0.35 tolerated(0.12) probably_damaging(0.986) TCGA-BR-8680-01 2 109088540 109088540 C T GCC2 Nonsense_Mutation p.R919* 0.31 TCGA-BR-8680-01 2 109379884 109379884 T G RANBP2 Missense_Mutation p.N963K 0.38 deleterious(0) benign(0.007) TCGA-BR-8680-01 2 109380976 109380976 A G RANBP2 Silent p.T1327T 0.35 TCGA-BR-8680-01 2 109382509 109382509 A G RANBP2 Silent p.G1838G 0.25 TCGA-BR-8680-01 2 109383881 109383881 G A RANBP2 Missense_Mutation p.E2296K 0.32 tolerated(0.14) possibly_damaging(0.761) TCGA-BR-8680-01 2 1093883 1093883 G A SNTG2 Missense_Mutation p.R71H 0.34 tolerated(1) benign(0) TCGA-BR-8680-01 2 109400188 109400188 A C RANBP2 Missense_Mutation p.N3169T 0.43 tolerated(0.11) probably_damaging(0.986) TCGA-BR-8680-01 2 109489943 109489943 C A CCDC138 Missense_Mutation p.S577Y 0.28 deleterious(0.01) possibly_damaging(0.781) TCGA-BR-8680-01 2 110901211 110901211 G A NPHP1 Silent p.G535G 0.32 TCGA-BR-8680-01 2 111419366 111419366 G A BUB1 Missense_Mutation p.A337V 0.07 tolerated(0.15) benign(0.004) TCGA-BR-8680-01 2 111431780 111431780 C A BUB1 Missense_Mutation p.E36D 0.31 tolerated(0.52) possibly_damaging(0.847) TCGA-BR-8680-01 2 112583386 112583386 T G ANAPC1 Missense_Mutation p.E891A 0.26 tolerated(0.12) possibly_damaging(0.48) TCGA-BR-8680-01 2 113286288 113286288 C T TTL Silent p.I350I 0.32 TCGA-BR-8680-01 2 113310287 113310287 G A POLR1B Missense_Mutation p.R351Q 0.38 tolerated(0.13) benign(0.106) TCGA-BR-8680-01 2 113330196 113330196 T G POLR1B Missense_Mutation p.L711R 0.31 deleterious(0) probably_damaging(0.994) TCGA-BR-8680-01 2 11347936 11347937 - T ROCK2 Frame_Shift_Ins p.M822Nfs*11 0.29 TCGA-BR-8680-01 2 113513567 113513567 C T CKAP2L Missense_Mutation p.A461T 0.29 deleterious(0.05) benign(0.126) TCGA-BR-8680-01 2 113514428 113514428 C T CKAP2L Missense_Mutation p.E174K 0.45 tolerated(0.35) benign(0.012) TCGA-BR-8680-01 2 113532656 113532656 T G IL1A Missense_Mutation p.E268D 0.35 tolerated(0.37) benign(0.251) TCGA-BR-8680-01 2 113593779 113593779 C A IL1B Nonsense_Mutation p.E10* 0.33 TCGA-BR-8680-01 2 114002048 114002048 G A PAX8 Silent p.G115G 0.35 TCGA-BR-8680-01 2 114210717 114210717 T C CBWD2 Silent p.G144G 0.27 TCGA-BR-8680-01 2 114220051 114220051 G T CBWD2 Missense_Mutation p.K214N 0.36 tolerated(1) benign(0.002) TCGA-BR-8680-01 2 114476740 114476740 C T SLC35F5 Missense_Mutation p.R496Q 0.31 tolerated(0.13) possibly_damaging(0.787) TCGA-BR-8680-01 2 114699791 114699791 T C ACTR3 Missense_Mutation p.L238S 0.31 deleterious(0) possibly_damaging(0.749) TCGA-BR-8680-01 2 114715074 114715074 G T ACTR3 3'UTR 0.34 TCGA-BR-8680-01 2 11696778 11696778 G A GREB1 Missense_Mutation p.R13H 0.29 deleterious(0) probably_damaging(0.998) TCGA-BR-8680-01 2 11800191 11800191 C T NTSR2 Missense_Mutation p.V323I 0.34 tolerated(0.65) benign(0.027) TCGA-BR-8680-01 2 118582580 118582580 G A DDX18 Missense_Mutation p.R424Q 0.39 tolerated(0.25) benign(0.081) TCGA-BR-8680-01 2 118766149 118766149 C A CCDC93 Missense_Mutation p.R43I 0.35 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 2 120194653 120194653 G A TMEM37 Silent p.T70T 0.22 TCGA-BR-8680-01 2 120643418 120643418 G A PTPN4 Missense_Mutation p.R212H 0.34 deleterious(0) probably_damaging(0.976) TCGA-BR-8680-01 2 120918482 120918482 C T EPB41L5 Missense_Mutation p.P607S 0.31 tolerated_low_confidence(0.27) benign(0.001) TCGA-BR-8680-01 2 121043651 121043651 G A RALB Missense_Mutation p.E106K 0.40 tolerated(0.27) possibly_damaging(0.561) TCGA-BR-8680-01 2 121047166 121047166 C A RALB Missense_Mutation p.L112I 0.14 deleterious(0.01) benign(0.411) TCGA-BR-8680-01 2 121740439 121740439 C T GLI2 Missense_Mutation p.R556C 0.25 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 2 122273287 122273287 C T CLASP1 Missense_Mutation p.E200K 0.35 deleterious(0) possibly_damaging(0.828) TCGA-BR-8680-01 2 122273335 122273335 G A CLASP1 Nonsense_Mutation p.R184* 0.33 TCGA-BR-8680-01 2 1243521 1243521 G A SNTG2 Silent p.A287A 0.32 TCGA-BR-8680-01 2 125204342 125204342 C T CNTNAP5 Missense_Mutation p.A249V 0.40 tolerated(0.52) benign(0.005) TCGA-BR-8680-01 2 127944807 127944807 G A CYP27C1 3'UTR 0.29 TCGA-BR-8680-01 2 127953001 127953001 A G CYP27C1 Missense_Mutation p.I210T 0.27 deleterious(0) probably_damaging(0.909) TCGA-BR-8680-01 2 128028934 128028934 C T ERCC3 Silent p.G641G 0.33 TCGA-BR-8680-01 2 128051178 128051178 A G ERCC3 Missense_Mutation p.S49P 0.34 tolerated(0.06) benign(0.002) TCGA-BR-8680-01 2 128079820 128079820 T G MAP3K2 Missense_Mutation p.T283P 0.38 deleterious(0.04) probably_damaging(0.997) TCGA-BR-8680-01 2 128346073 128346073 G T MYO7B Missense_Mutation p.E599D 0.30 tolerated(0.33) benign(0.009) TCGA-BR-8680-01 2 128464123 128464123 C T WDR33 Missense_Mutation p.R1262Q 0.39 deleterious_low_confidence(0.01) benign(0.335) TCGA-BR-8680-01 2 128471562 128471562 C T WDR33 Missense_Mutation p.G968D 0.38 deleterious_low_confidence(0) probably_damaging(0.92) TCGA-BR-8680-01 2 12863671 12863671 G A TRIB2 Missense_Mutation p.E186K 0.36 tolerated(0.33) benign(0.023) TCGA-BR-8680-01 2 128878797 128878797 G A UGGT1 Missense_Mutation p.R333Q 0.30 tolerated(0.4) benign(0.324) TCGA-BR-8680-01 2 128914829 128914829 A C UGGT1 Missense_Mutation p.D755A 0.37 deleterious(0.01) benign(0.016) TCGA-BR-8680-01 2 130832596 130832596 C T POTEF Missense_Mutation p.E817K 0.40 deleterious_low_confidence(0.02) possibly_damaging(0.878) TCGA-BR-8680-01 2 130911999 130911999 A C SMPD4 Missense_Mutation p.F543V 0.50 tolerated(0.15) possibly_damaging(0.765) TCGA-BR-8680-01 2 131356288 131356288 G A CFC1 Silent p.F58F 0.18 TCGA-BR-8680-01 2 131487111 131487111 C T GPR148 Silent p.F129F 0.42 TCGA-BR-8680-01 2 131521511 131521511 G A AMER3 Silent p.S622S 0.31 TCGA-BR-8680-01 2 131796522 131796522 G A ARHGEF4 Missense_Mutation p.E222K 0.38 tolerated(0.27) probably_damaging(0.999) TCGA-BR-8680-01 2 131801887 131801887 G A ARHGEF4 Missense_Mutation p.D539N 0.31 tolerated(0.22) probably_damaging(0.97) TCGA-BR-8680-01 2 133489398 133489398 G A NCKAP5 Silent p.S1785S 0.33 TCGA-BR-8680-01 2 133539768 133539768 A C NCKAP5 Missense_Mutation p.V1539G 0.31 tolerated(0.27) benign(0.001) TCGA-BR-8680-01 2 135107416 135107416 G A MGAT5 Missense_Mutation p.E385K 0.25 tolerated(0.06) possibly_damaging(0.639) TCGA-BR-8680-01 2 135616864 135616864 T G ACMSD Missense_Mutation p.F46V 0.39 deleterious(0) probably_damaging(0.976) TCGA-BR-8680-01 2 135738478 135738478 T C MAP3K19 Missense_Mutation p.Y1278C 0.31 deleterious(0.02) probably_damaging(0.923) TCGA-BR-8680-01 2 135740777 135740777 C A MAP3K19 Intron 0.28 TCGA-BR-8680-01 2 135741299 135741299 C A MAP3K19 Nonsense_Mutation p.E1057* 0.33 TCGA-BR-8680-01 2 135756376 135756376 T C MAP3K19 Missense_Mutation p.N169S 0.34 tolerated(0.5) benign(0.004) TCGA-BR-8680-01 2 135815651 135815651 G A RAB3GAP1 Missense_Mutation p.E49K 0.32 tolerated(0.72) benign(0.028) TCGA-BR-8680-01 2 135878432 135878432 G A RAB3GAP1 Missense_Mutation p.R231Q 0.30 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 2 136362556 136362556 A G R3HDM1 Silent p.E47E 0.26 TCGA-BR-8680-01 2 136393692 136393692 A C R3HDM1 Missense_Mutation p.K281T 0.31 deleterious(0) probably_damaging(0.993) TCGA-BR-8680-01 2 136740985 136740985 G T DARS Missense_Mutation p.Q36K 0.37 deleterious(0.02) benign(0.156) TCGA-BR-8680-01 2 137814328 137814328 G A THSD7B Missense_Mutation p.E160K 0.40 deleterious(0.02) benign(0.33) TCGA-BR-8680-01 2 137988724 137988724 T C THSD7B Missense_Mutation p.S612P 0.30 tolerated(0.42) possibly_damaging(0.607) TCGA-BR-8680-01 2 138400060 138400060 C T THSD7B Nonsense_Mutation p.R1271* 0.33 TCGA-BR-8680-01 2 139307759 139307759 A C SPOPL 5'UTR 0.44 TCGA-BR-8680-01 2 139316695 139316695 A G SPOPL Missense_Mutation p.E195G 0.34 deleterious(0) possibly_damaging(0.56) TCGA-BR-8680-01 2 139326757 139326757 A G SPOPL 3'UTR 0.38 TCGA-BR-8680-01 2 141027830 141027830 T C LRP1B Missense_Mutation p.T4410A 0.30 benign(0.217) TCGA-BR-8680-01 2 141108514 141108514 G T LRP1B Missense_Mutation p.S3915Y 0.31 possibly_damaging(0.608) TCGA-BR-8680-01 2 141128375 141128375 G A LRP1B Missense_Mutation p.R3638W 0.36 possibly_damaging(0.898) TCGA-BR-8680-01 2 141143550 141143550 G A LRP1B Silent p.F3481F 0.27 TCGA-BR-8680-01 2 141201904 141201904 T C LRP1B Missense_Mutation p.D3430G 0.32 possibly_damaging(0.822) TCGA-BR-8680-01 2 141245224 141245224 G A LRP1B Missense_Mutation p.R3069C 0.28 possibly_damaging(0.898) TCGA-BR-8680-01 2 141291621 141291621 G A LRP1B Silent p.C2577C 0.38 TCGA-BR-8680-01 2 141460006 141460006 A G LRP1B Missense_Mutation p.I2047T 0.24 benign(0.415) TCGA-BR-8680-01 2 141474386 141474386 C A LRP1B Splice_Site p.X1920_splice 0.38 TCGA-BR-8680-01 2 141747168 141747168 C A LRP1B Missense_Mutation p.K901N 0.31 probably_damaging(0.954) TCGA-BR-8680-01 2 141762987 141762987 G A LRP1B Missense_Mutation p.T807I 0.38 possibly_damaging(0.507) TCGA-BR-8680-01 2 141773306 141773306 C T LRP1B Missense_Mutation p.D717N 0.31 possibly_damaging(0.555) TCGA-BR-8680-01 2 141812693 141812693 G T LRP1B Nonsense_Mutation p.S515* 0.30 TCGA-BR-8680-01 2 141816481 141816481 C T LRP1B Missense_Mutation p.R460Q 0.22 benign(0.238) TCGA-BR-8680-01 2 141819833 141819833 G T LRP1B Missense_Mutation p.F341L 0.30 benign(0.153) TCGA-BR-8680-01 2 141946119 141946119 C T LRP1B Missense_Mutation p.R295Q 0.28 possibly_damaging(0.553) TCGA-BR-8680-01 2 143676232 143676232 C A KYNU Missense_Mutation p.S75Y 0.25 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 2 143959745 143959745 G T ARHGAP15 Missense_Mutation p.D70Y 0.26 tolerated(0.07) possibly_damaging(0.646) TCGA-BR-8680-01 2 144899590 144899590 A G GTDC1 Missense_Mutation p.V127A 0.26 tolerated(0.8) benign(0.002) TCGA-BR-8680-01 2 145147102 145147102 A G ZEB2 Silent p.D1187D 0.34 TCGA-BR-8680-01 2 149216265 149216265 C A MBD5 5'UTR 0.45 TCGA-BR-8680-01 2 149247655 149247655 G T MBD5 Missense_Mutation p.R1252I 0.33 deleterious_low_confidence(0.01) unknown(0) TCGA-BR-8680-01 2 149840179 149840179 C T KIF5C Missense_Mutation p.L539F 0.26 tolerated(0.44) benign(0.006) TCGA-BR-8680-01 2 150061822 150061822 G A LYPD6B Missense_Mutation p.A45T 0.31 benign(0.024) TCGA-BR-8680-01 2 151331453 151331453 G A RND3 Missense_Mutation p.S95L 0.31 deleterious(0.04) possibly_damaging(0.533) TCGA-BR-8680-01 2 152107399 152107399 G T RBM43 3'UTR 0.40 TCGA-BR-8680-01 2 152236129 152236129 A G TNFAIP6 3'UTR 0.41 TCGA-BR-8680-01 2 152293828 152293828 T C RIF1 Silent p.V482V 0.35 TCGA-BR-8680-01 2 152296636 152296636 A C RIF1 Missense_Mutation p.T548P 0.38 deleterious(0.03) possibly_damaging(0.713) TCGA-BR-8680-01 2 152308139 152308139 G T RIF1 Missense_Mutation p.R755I 0.36 deleterious(0.05) probably_damaging(0.961) TCGA-BR-8680-01 2 152320412 152320412 G T RIF1 Missense_Mutation p.D1460Y 0.32 deleterious(0) possibly_damaging(0.897) TCGA-BR-8680-01 2 152350367 152350367 C A NEB Missense_Mutation p.E8198D 0.58 benign(0.036) TCGA-BR-8680-01 2 152352870 152352870 C A NEB Nonsense_Mutation p.E8136* 0.33 TCGA-BR-8680-01 2 152381115 152381115 C A NEB Missense_Mutation p.D7430Y 0.32 probably_damaging(0.942) TCGA-BR-8680-01 2 152382699 152382699 C T NEB Silent p.A7341A 0.27 TCGA-BR-8680-01 2 152411448 152411448 G A NEB Silent p.I6475I 0.38 TCGA-BR-8680-01 2 152432773 152432773 G T NEB Silent p.I5600I 0.33 TCGA-BR-8680-01 2 152466440 152466440 C A NEB Missense_Mutation p.K4071N 0.39 probably_damaging(0.956) TCGA-BR-8680-01 2 152474792 152474792 A G NEB Silent p.N3691N 0.32 TCGA-BR-8680-01 2 152476236 152476236 T C NEB Missense_Mutation p.H3534R 0.30 probably_damaging(0.942) TCGA-BR-8680-01 2 152490194 152490194 G A NEB Missense_Mutation p.R3130W 0.36 probably_damaging(0.989) TCGA-BR-8680-01 2 152507230 152507230 T C NEB Missense_Mutation p.D2362G 0.32 probably_damaging(0.999) TCGA-BR-8680-01 2 152512918 152512918 C T NEB Missense_Mutation p.E2082K 0.36 possibly_damaging(0.558) TCGA-BR-8680-01 2 152521935 152521935 C T NEB Missense_Mutation p.R1717H 0.37 probably_damaging(0.999) TCGA-BR-8680-01 2 152548380 152548380 C A NEB Missense_Mutation p.D737Y 0.58 probably_damaging(1) TCGA-BR-8680-01 2 152563476 152563476 T G NEB Silent p.G357G 0.33 TCGA-BR-8680-01 2 152709980 152709980 T C CACNB4 Silent p.K366K 0.38 TCGA-BR-8680-01 2 153475668 153475668 A C FMNL2 Missense_Mutation p.E541D 0.22 benign(0.444) TCGA-BR-8680-01 2 153486227 153486227 A G FMNL2 Missense_Mutation p.K820E 0.47 possibly_damaging(0.486) TCGA-BR-8680-01 2 153488588 153488588 G T FMNL2 Nonsense_Mutation p.E873* 0.47 TCGA-BR-8680-01 2 153519137 153519137 C A PRPF40A Missense_Mutation p.D768Y 0.21 deleterious(0) probably_damaging(0.961) TCGA-BR-8680-01 2 155158056 155158056 A C GALNT13 Missense_Mutation p.E370D 0.31 deleterious(0.04) benign(0.256) TCGA-BR-8680-01 2 155555618 155555618 G A KCNJ3 Missense_Mutation p.D111N 0.30 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 2 15601451 15601451 A G NBAS Missense_Mutation p.V738A 0.33 tolerated(0.14) possibly_damaging(0.872) TCGA-BR-8680-01 2 157427707 157427707 G A GPD2 Missense_Mutation p.R557H 0.36 deleterious(0) possibly_damaging(0.756) TCGA-BR-8680-01 2 15768807 15768807 G A DDX1 Missense_Mutation p.R602Q 0.35 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 2 158115201 158115201 C T GALNT5 Missense_Mutation p.P203S 0.25 tolerated(0.19) benign(0.035) TCGA-BR-8680-01 2 158142577 158142577 C T GALNT5 Missense_Mutation p.R558W 0.35 deleterious(0) probably_damaging(0.998) TCGA-BR-8680-01 2 159481805 159481805 G A PKP4 Missense_Mutation p.R340H 0.35 tolerated(0.32) benign(0.015) TCGA-BR-8680-01 2 160019918 160019918 C T TANC1 Silent p.C269C 0.29 TCGA-BR-8680-01 2 160193585 160193585 A C BAZ2B Missense_Mutation p.I1888M 0.30 benign(0.017) TCGA-BR-8680-01 2 160303396 160303396 C T BAZ2B Missense_Mutation p.G198E 0.28 benign(0) TCGA-BR-8680-01 2 160304759 160304759 C T BAZ2B Missense_Mutation p.E166K 0.30 benign(0.305) TCGA-BR-8680-01 2 160731976 160731976 G A LY75-CD302 Silent p.P651P 0.28 TCGA-BR-8680-01 2 160994243 160994243 G A ITGB6 Silent p.C454C 0.36 TCGA-BR-8680-01 2 161052788 161052788 C A ITGB6 Missense_Mutation p.Q95H 0.35 deleterious(0.03) probably_damaging(0.944) TCGA-BR-8680-01 2 161056608 161056608 A T ITGB6 5'UTR 0.30 TCGA-BR-8680-01 2 162267917 162267917 C T PSMD14 3'UTR 0.30 TCGA-BR-8680-01 2 162762303 162762303 A G SLC4A10 Missense_Mutation p.I635V 0.36 deleterious(0) probably_damaging(0.986) TCGA-BR-8680-01 2 162804171 162804171 C A SLC4A10 Missense_Mutation p.F733L 0.37 deleterious(0.02) probably_damaging(0.994) TCGA-BR-8680-01 2 162805661 162805661 C T SLC4A10 Nonsense_Mutation p.R757* 0.29 TCGA-BR-8680-01 2 163003923 163003923 T C GCG Missense_Mutation p.Y65C 0.36 deleterious(0) possibly_damaging(0.886) TCGA-BR-8680-01 2 163070503 163070503 G A FAP Missense_Mutation p.S316L 0.13 tolerated(0.19) probably_damaging(0.994) TCGA-BR-8680-01 2 163134117 163134117 G A IFIH1 Nonsense_Mutation p.R618* 0.46 TCGA-BR-8680-01 2 163174673 163174673 T C IFIH1 Missense_Mutation p.T49A 0.49 tolerated(0.58) benign(0.002) TCGA-BR-8680-01 2 163241450 163241450 C T KCNH7 Splice_Site p.X904_splice 0.27 TCGA-BR-8680-01 2 1647288 1647288 C T PXDN Silent p.T1268T 0.41 TCGA-BR-8680-01 2 1652186 1652186 G A PXDN Silent p.F1122F 0.39 TCGA-BR-8680-01 2 165378577 165378577 C T GRB14 Silent p.A243A 0.27 TCGA-BR-8680-01 2 165477817 165477817 C A GRB14 Translation_Start_Site p.M1? 0.26 deleterious_low_confidence(0) benign(0.38) TCGA-BR-8680-01 2 165552047 165552047 C A COBLL1 Missense_Mutation p.D657Y 0.12 deleterious(0) benign(0.405) TCGA-BR-8680-01 2 165552116 165552116 C T COBLL1 Missense_Mutation p.A634T 0.29 tolerated(0.41) benign(0.004) TCGA-BR-8680-01 2 165584506 165584506 C A COBLL1 Nonsense_Mutation p.E212* 0.35 TCGA-BR-8680-01 2 165772419 165772419 A G SLC38A11 Missense_Mutation p.S172P 0.32 deleterious(0.01) probably_damaging(0.985) TCGA-BR-8680-01 2 165947775 165947775 G A SCN3A Nonsense_Mutation p.R1630* 0.34 TCGA-BR-8680-01 2 165996041 165996041 G T SCN3A Silent p.S699S 0.29 TCGA-BR-8680-01 2 166021012 166021012 G T SCN3A Silent p.I164I 0.25 TCGA-BR-8680-01 2 166152574 166152574 C A SCN2A Missense_Mutation p.L81M 0.22 deleterious(0.04) probably_damaging(1) TCGA-BR-8680-01 2 166198827 166198827 G A SCN2A Missense_Mutation p.A804T 0.43 deleterious(0.02) possibly_damaging(0.516) TCGA-BR-8680-01 2 166223836 166223836 C T SCN2A Silent p.F1210F 0.29 TCGA-BR-8680-01 2 166245742 166245742 C T SCN2A Missense_Mutation p.A1809V 0.33 deleterious(0) probably_damaging(0.997) TCGA-BR-8680-01 2 166535407 166535407 C T CSRNP3 Missense_Mutation p.S301F 0.09 tolerated(0.21) benign(0.421) TCGA-BR-8680-01 2 166535733 166535733 C T CSRNP3 Missense_Mutation p.L410F 0.31 deleterious(0) probably_damaging(0.997) TCGA-BR-8680-01 2 166767940 166767940 T C TTC21B Silent p.G786G 0.29 TCGA-BR-8680-01 2 166852557 166852557 G A SCN1A Missense_Mutation p.S1516L 0.18 deleterious(0) benign(0.388) TCGA-BR-8680-01 2 166870258 166870258 G T SCN1A Missense_Mutation p.A1234D 0.18 deleterious(0) probably_damaging(0.928) TCGA-BR-8680-01 2 166900452 166900452 G A SCN1A Silent p.F590F 0.24 TCGA-BR-8680-01 2 167060699 167060699 T A SCN9A Missense_Mutation p.N1503Y 0.29 deleterious(0) possibly_damaging(0.566) TCGA-BR-8680-01 2 167108403 167108403 G T SCN9A Intron 0.35 TCGA-BR-8680-01 2 167141144 167141144 C T SCN9A Missense_Mutation p.R598H 0.28 tolerated(0.12) benign(0.287) TCGA-BR-8680-01 2 167141266 167141266 G T SCN9A Missense_Mutation p.F557L 0.29 tolerated(0.08) benign(0.133) TCGA-BR-8680-01 2 167162341 167162341 T C SCN9A Missense_Mutation p.D186G 0.32 deleterious(0) probably_damaging(0.986) TCGA-BR-8680-01 2 167163559 167163559 T G SCN9A Missense_Mutation p.K95T 0.37 deleterious(0) probably_damaging(0.936) TCGA-BR-8680-01 2 167262951 167262951 T C SCN7A Silent p.V1396V 0.31 TCGA-BR-8680-01 2 167304120 167304120 A G SCN7A Splice_Site p.X463_splice 0.25 TCGA-BR-8680-01 2 16745275 16745275 C T FAM49A Missense_Mutation p.E94K 0.30 tolerated(0.09) possibly_damaging(0.57) TCGA-BR-8680-01 2 1680706 1680706 G A PXDN Nonsense_Mutation p.R281* 0.22 TCGA-BR-8680-01 2 1680771 1680771 G A PXDN Missense_Mutation p.S259L 0.25 tolerated(0.66) benign(0.02) TCGA-BR-8680-01 2 168098327 168098327 G A XIRP2 Silent p.S361S 0.30 TCGA-BR-8680-01 2 168100781 168100781 T G XIRP2 Missense_Mutation p.F960C 0.34 benign(0.149) TCGA-BR-8680-01 2 168101110 168101110 T G XIRP2 Missense_Mutation p.F1070V 0.29 possibly_damaging(0.897) TCGA-BR-8680-01 2 168101932 168101932 C A XIRP2 Missense_Mutation p.H1344N 0.37 benign(0.22) TCGA-BR-8680-01 2 168103654 168103654 C T XIRP2 Missense_Mutation p.L1918F 0.32 possibly_damaging(0.499) TCGA-BR-8680-01 2 168103786 168103786 A G XIRP2 Missense_Mutation p.T1962A 0.43 benign(0.006) TCGA-BR-8680-01 2 168105219 168105219 T G XIRP2 Missense_Mutation p.D2439E 0.27 benign(0.012) TCGA-BR-8680-01 2 168105268 168105268 A G XIRP2 Missense_Mutation p.K2456E 0.30 benign(0.013) TCGA-BR-8680-01 2 169732594 169732594 G A SPC25 Nonsense_Mutation p.R147* 0.22 TCGA-BR-8680-01 2 169757752 169757752 G A G6PC2 5'UTR 0.41 TCGA-BR-8680-01 2 169814479 169814479 G T ABCB11 Missense_Mutation p.L780I 0.31 tolerated(1) benign(0.232) TCGA-BR-8680-01 2 169869801 169869801 T C ABCB11 Missense_Mutation p.T124A 0.35 tolerated(0.24) benign(0.309) TCGA-BR-8680-01 2 169985065 169985065 A C LRP2 3'UTR 0.34 TCGA-BR-8680-01 2 170011043 170011043 G T LRP2 Missense_Mutation p.F4074L 0.35 benign(0.103) TCGA-BR-8680-01 2 170031797 170031797 G T LRP2 Missense_Mutation p.F3558L 0.42 probably_damaging(0.926) TCGA-BR-8680-01 2 170591738 170591738 G T KLHL23 Nonsense_Mutation p.E72* 0.29 TCGA-BR-8680-01 2 170591939 170591939 T C KLHL23 Missense_Mutation p.C139R 0.30 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 2 170681160 170681160 A C METTL5 5'UTR 0.37 TCGA-BR-8680-01 2 171399458 171399458 C T MYO3B Silent p.F1206F 0.33 TCGA-BR-8680-01 2 171573683 171573683 C T SP5 Silent p.G322G 0.19 TCGA-BR-8680-01 2 171573901 171573901 C T SP5 Missense_Mutation p.A395V 0.28 tolerated_low_confidence(0.2) benign(0) TCGA-BR-8680-01 2 171573992 171573992 A G SP5 3'UTR 0.40 TCGA-BR-8680-01 2 171686016 171686016 G T GAD1 Missense_Mutation p.E59D 0.28 tolerated_low_confidence(0.53) benign(0.001) TCGA-BR-8680-01 2 171716257 171716257 T C GAD1 Silent p.G550G 0.35 TCGA-BR-8680-01 2 171811194 171811194 C T GORASP2 Nonsense_Mutation p.R201* 0.30 TCGA-BR-8680-01 2 171863007 171863007 A C TLK1 Missense_Mutation p.I582S 0.38 deleterious(0) possibly_damaging(0.869) TCGA-BR-8680-01 2 173423516 173423516 G T PDK1 Nonsense_Mutation p.E93* 0.41 TCGA-BR-8680-01 2 174034590 174034590 C A MLTK Missense_Mutation p.L73I 0.36 tolerated(0.23) benign(0.128) TCGA-BR-8680-01 2 174062850 174062850 C T MLTK Intron 0.29 TCGA-BR-8680-01 2 174228618 174228618 G A CDCA7 Missense_Mutation p.D232N 0.42 tolerated(0.3) benign(0.001) TCGA-BR-8680-01 2 175243671 175243671 G A CIR1 Missense_Mutation p.S155L 0.35 deleterious(0) unknown(0) TCGA-BR-8680-01 2 175333750 175333750 T C GPR155 Missense_Mutation p.M358V 0.31 deleterious(0.01) benign(0.11) TCGA-BR-8680-01 2 175431871 175431871 A C WIPF1 Missense_Mutation p.D461E 0.33 tolerated(0.06) benign(0.003) TCGA-BR-8680-01 2 175618334 175618334 G A CHRNA1 Silent p.F250F 0.39 TCGA-BR-8680-01 2 175676246 175676246 G A CHN1 Silent p.F319F 0.31 TCGA-BR-8680-01 2 176959337 176959337 A G HOXD13 Missense_Mutation p.D304G 0.35 deleterious(0) probably_damaging(0.984) TCGA-BR-8680-01 2 176973735 176973735 G A HOXD11 Silent p.E294E 0.32 TCGA-BR-8680-01 2 177037019 177037019 G A HOXD3 3'UTR 0.20 TCGA-BR-8680-01 2 178081278 178081278 G A HNRNPA3 Missense_Mutation p.A201T 0.33 deleterious(0.04) benign(0.128) TCGA-BR-8680-01 2 178416077 178416077 T G TTC30B Missense_Mutation p.E472A 0.22 tolerated(0.05) benign(0.213) TCGA-BR-8680-01 2 178416157 178416157 C A TTC30B Missense_Mutation p.K445N 0.17 deleterious(0) possibly_damaging(0.889) TCGA-BR-8680-01 2 178416244 178416244 A G TTC30B Silent p.Y416Y 0.23 TCGA-BR-8680-01 2 178879182 178879182 T C PDE11A Silent p.R306R 0.37 TCGA-BR-8680-01 2 178969129 178969129 T G CYCTP RNA 0.33 TCGA-BR-8680-01 2 179193050 179193050 A C OSBPL6 Missense_Mutation p.K88T 0.33 tolerated(0.08) benign(0.304) TCGA-BR-8680-01 2 179197688 179197688 G T OSBPL6 Missense_Mutation p.D193Y 0.39 deleterious(0.01) possibly_damaging(0.759) TCGA-BR-8680-01 2 179236941 179236941 T G OSBPL6 Missense_Mutation p.I484S 0.40 tolerated(0.73) probably_damaging(0.998) TCGA-BR-8680-01 2 179260240 179260240 G A OSBPL6 Missense_Mutation p.R945Q 0.37 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 2 17927099 17927099 T C SMC6 Missense_Mutation p.T39A 0.22 tolerated(0.78) benign(0) TCGA-BR-8680-01 2 179393423 179393423 G A TTN Silent p.I35685I 0.37 TCGA-BR-8680-01 2 179398239 179398239 A C TTN Nonsense_Mutation p.L34368* 0.30 TCGA-BR-8680-01 2 179418747 179418747 T C TTN Silent p.G29697G 0.24 TCGA-BR-8680-01 2 179427058 179427058 A G TTN Missense_Mutation p.F27934S 0.34 TCGA-BR-8680-01 2 179431219 179431219 C T TTN Missense_Mutation p.R26547Q 0.28 TCGA-BR-8680-01 2 179433949 179433949 A C TTN Missense_Mutation p.I25637S 0.30 TCGA-BR-8680-01 2 179438397 179438397 T G TTN Missense_Mutation p.K24154N 0.33 TCGA-BR-8680-01 2 179438979 179438979 G A TTN Silent p.I23960I 0.26 TCGA-BR-8680-01 2 179442082 179442082 T C TTN Missense_Mutation p.T22994A 0.27 TCGA-BR-8680-01 2 179446661 179446661 G T TTN Silent p.S22145S 0.28 TCGA-BR-8680-01 2 179449185 179449185 C T TTN Missense_Mutation p.R21698H 0.29 TCGA-BR-8680-01 2 179449717 179449717 A - TTN Intron 0.27 TCGA-BR-8680-01 2 179469823 179469823 T G TTN Missense_Mutation p.K18027N 0.32 TCGA-BR-8680-01 2 179485561 179485561 T C TTN Missense_Mutation p.D15259G 0.32 TCGA-BR-8680-01 2 179485594 179485594 A C TTN Missense_Mutation p.F15248C 0.27 TCGA-BR-8680-01 2 179495649 179495649 C T TTN Missense_Mutation p.R14679Q 0.26 TCGA-BR-8680-01 2 179496966 179496966 G A TTN Missense_Mutation p.S14552L 0.19 TCGA-BR-8680-01 2 179528389 179528389 G A TTN Missense_Mutation p.A12166V 0.32 TCGA-BR-8680-01 2 179532032 179532032 T C TTN Missense_Mutation p.R11910G 0.31 TCGA-BR-8680-01 2 179537380 179537381 - T TTN Frame_Shift_Ins p.E11613Rfs*9 0.26 TCGA-BR-8680-01 2 179547583 179547583 C A TTN Nonsense_Mutation p.E10979* 0.22 TCGA-BR-8680-01 2 179549099 179549099 G T TTN Missense_Mutation p.L10894I 0.28 TCGA-BR-8680-01 2 179567308 179567308 G T TTN Silent p.S10102S 0.34 TCGA-BR-8680-01 2 179569059 179569059 G T TTN Missense_Mutation p.S10013Y 0.39 TCGA-BR-8680-01 2 179575894 179575894 T C TTN Missense_Mutation p.T9357A 0.31 TCGA-BR-8680-01 2 179579257 179579257 G A TTN Silent p.V8748V 0.36 TCGA-BR-8680-01 2 179581897 179581897 C T TTN Missense_Mutation p.D8522N 0.31 TCGA-BR-8680-01 2 179589096 179589096 G T TTN Silent p.I7002I 0.13 TCGA-BR-8680-01 2 179593390 179593390 G T TTN Missense_Mutation p.D6421E 0.41 TCGA-BR-8680-01 2 179596150 179596150 C T TTN Silent p.E5781E 0.38 TCGA-BR-8680-01 2 179605416 179605416 C T TTN Missense_Mutation p.E4182K 0.39 TCGA-BR-8680-01 2 179606118 179606118 G A TTN Missense_Mutation p.R3948C 0.40 TCGA-BR-8680-01 2 179606407 179606407 A C TTN Missense_Mutation p.I3851M 0.32 TCGA-BR-8680-01 2 179610839 179610839 T C TTN Intron 0.25 TCGA-BR-8680-01 2 179613827 179613827 T G TTN Intron 0.37 TCGA-BR-8680-01 2 179632515 179632515 G A TTN Missense_Mutation p.R3148C 0.31 TCGA-BR-8680-01 2 179638812 179638812 T C TTN Silent p.G2361G 0.28 TCGA-BR-8680-01 2 179643841 179643841 G T TTN Missense_Mutation p.A1323D 0.25 TCGA-BR-8680-01 2 179647545 179647545 G A TTN Silent p.L1030L 0.37 TCGA-BR-8680-01 2 179701651 179701651 A G CCDC141 Missense_Mutation p.V1432A 0.25 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 2 180348096 180348096 C T ZNF385B Silent p.T191T 0.26 TCGA-BR-8680-01 2 180810175 180810175 T C CWC22 Missense_Mutation p.D803G 0.31 tolerated_low_confidence(0.16) benign(0.001) TCGA-BR-8680-01 2 183011801 183011801 C T PDE1A 3'UTR 0.35 TCGA-BR-8680-01 2 185801356 185801356 A G ZNF804A Missense_Mutation p.I411M 0.27 tolerated(0.14) benign(0.009) TCGA-BR-8680-01 2 186672851 186672851 A G FSIP2 Missense_Mutation p.D6362G 0.31 probably_damaging(0.999) TCGA-BR-8680-01 2 18737024 18737024 G A RDH14 Silent p.C148C 0.29 TCGA-BR-8680-01 2 187626873 187626873 G A FAM171B Missense_Mutation p.E602K 0.45 tolerated(0.28) possibly_damaging(0.856) TCGA-BR-8680-01 2 187693422 187693422 A G ZSWIM2 Silent p.N397N 0.25 TCGA-BR-8680-01 2 189899735 189899735 T G COL5A2 Missense_Mutation p.K1420N 0.30 unknown(0) TCGA-BR-8680-01 2 190044367 190044367 A G COL5A2 5'UTR 0.36 TCGA-BR-8680-01 2 190044376 190044376 T G COL5A2 5'UTR 0.30 TCGA-BR-8680-01 2 190426571 190426571 A C SLC40A1 3'UTR 0.28 TCGA-BR-8680-01 2 190602514 190602514 G A ANKAR Missense_Mutation p.E1177K 0.25 deleterious(0.02) possibly_damaging(0.602) TCGA-BR-8680-01 2 190611312 190611312 A G ANKAR Missense_Mutation p.K1422E 0.45 tolerated_low_confidence(0.07) benign(0.004) TCGA-BR-8680-01 2 190647161 190647161 A C ORMDL1 Missense_Mutation p.I54S 0.37 tolerated(0.05) benign(0.27) TCGA-BR-8680-01 2 191759964 191759964 A C GLS Missense_Mutation p.K158T 0.32 tolerated(0.1) benign(0.029) TCGA-BR-8680-01 2 191797590 191797590 G T GLS Intron 0.21 TCGA-BR-8680-01 2 192255065 192255065 C T MYO1B Missense_Mutation p.A610V 0.12 tolerated(0.15) benign(0.054) TCGA-BR-8680-01 2 196544962 196544962 A C SLC39A10 Missense_Mutation p.K66Q 0.28 tolerated(0.51) possibly_damaging(0.476) TCGA-BR-8680-01 2 196602633 196602633 G T DNAH7 3'UTR 0.24 TCGA-BR-8680-01 2 196722258 196722258 G T DNAH7 Missense_Mutation p.H2753N 0.06 deleterious(0.03) possibly_damaging(0.449) TCGA-BR-8680-01 2 197002222 197002222 G A STK17B Silent p.F356F 0.28 TCGA-BR-8680-01 2 197002332 197002332 A G STK17B Missense_Mutation p.S320P 0.40 tolerated(0.38) benign(0) TCGA-BR-8680-01 2 197105219 197105219 C A HECW2 Missense_Mutation p.D1240Y 0.36 deleterious(0) probably_damaging(0.994) TCGA-BR-8680-01 2 197729765 197729765 C T PGAP1 Missense_Mutation p.V603I 0.27 tolerated(0.46) benign(0.003) TCGA-BR-8680-01 2 197986245 197986245 T C ANKRD44 Silent p.G239G 0.33 TCGA-BR-8680-01 2 198511371 198511371 G T RFTN2 Silent p.V53V 0.23 TCGA-BR-8680-01 2 198540074 198540074 C T RFTN2 Missense_Mutation p.E37K 0.30 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 2 200789803 200789803 A G C2orf69 Missense_Mutation p.T118A 0.45 tolerated(0.96) benign(0.007) TCGA-BR-8680-01 2 200797994 200797994 G T TYW5 Silent p.I248I 0.41 TCGA-BR-8680-01 2 20135296 20135296 A G WDR35 Missense_Mutation p.L839S 0.35 deleterious(0) probably_damaging(0.997) TCGA-BR-8680-01 2 201436553 201436553 G T SGOL2 Missense_Mutation p.R495I 0.33 tolerated(0.29) benign(0.025) TCGA-BR-8680-01 2 201467062 201467062 C T AOX1 Silent p.F164F 0.29 TCGA-BR-8680-01 2 201477409 201477409 C T AOX1 Silent p.V447V 0.31 TCGA-BR-8680-01 2 202558726 202558726 A G MPP4 5'UTR 0.33 TCGA-BR-8680-01 2 202900702 202900702 C T FZD7 Silent p.F444F 0.33 TCGA-BR-8680-01 2 203329536 203329536 G A BMPR2 Silent p.S27S 0.28 TCGA-BR-8680-01 2 203749137 203749137 C T WDR12 Missense_Mutation p.G288D 0.29 deleterious(0.02) probably_damaging(0.999) TCGA-BR-8680-01 2 204034508 204034508 T G NBEAL1 Missense_Mutation p.H1983Q 0.28 deleterious(0.01) benign(0.04) TCGA-BR-8680-01 2 204073897 204073897 T G NBEAL1 Missense_Mutation p.I2517S 0.39 deleterious(0) probably_damaging(0.937) TCGA-BR-8680-01 2 204305381 204305381 C T RAPH1 Silent p.Q844Q 0.31 TCGA-BR-8680-01 2 205978262 205978262 G T PARD3B Missense_Mutation p.G214V 0.36 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 2 206870101 206870101 A G INO80D Missense_Mutation p.V692A 0.29 tolerated_low_confidence(0.21) benign(0.027) TCGA-BR-8680-01 2 207026796 207026796 G A EEF1B2 Missense_Mutation p.R122H 0.19 tolerated(0.06) benign(0.001) TCGA-BR-8680-01 2 207040930 207040930 G T GPR1 Missense_Mutation p.L348M 0.31 tolerated(0.17) benign(0.033) TCGA-BR-8680-01 2 207482393 207482393 C A ADAM23 3'UTR 0.45 TCGA-BR-8680-01 2 207527726 207527726 C T DYTN Missense_Mutation p.A512T 0.34 tolerated(1) benign(0.003) TCGA-BR-8680-01 2 208442362 208442362 C T CREB1 Silent p.V288V 0.21 TCGA-BR-8680-01 2 208478021 208478021 C A METTL21A Nonsense_Mutation p.E136* 0.36 TCGA-BR-8680-01 2 208841424 208841424 C T PLEKHM3 Silent p.T499T 0.27 TCGA-BR-8680-01 2 208986349 208986349 A C CRYGD 3'UTR 0.38 TCGA-BR-8680-01 2 209025503 209025503 G A CRYGA 3'UTR 0.28 TCGA-BR-8680-01 2 209025593 209025593 A C CRYGA Missense_Mutation p.Y154D 0.33 deleterious(0.01) possibly_damaging(0.727) TCGA-BR-8680-01 2 210557748 210557748 C A MAP2 Missense_Mutation p.S285Y 0.32 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BR-8680-01 2 210559824 210559824 C T MAP2 Missense_Mutation p.A977V 0.27 tolerated_low_confidence(0.1) benign(0.155) TCGA-BR-8680-01 2 210940471 210940471 C A KANSL1L Missense_Mutation p.E520D 0.26 tolerated(0.49) possibly_damaging(0.516) TCGA-BR-8680-01 2 211018339 211018339 C A KANSL1L Missense_Mutation p.R323I 0.31 deleterious(0.04) probably_damaging(0.921) TCGA-BR-8680-01 2 211018713 211018713 C A KANSL1L Missense_Mutation p.K198N 0.32 tolerated(0.11) benign(0.046) TCGA-BR-8680-01 2 211421416 211421416 A C CPS1 Intron 0.40 TCGA-BR-8680-01 2 211466941 211466941 A C CPS1 Missense_Mutation p.K581Q 0.29 tolerated(0.53) benign(0.004) TCGA-BR-8680-01 2 211471539 211471539 G A CPS1 Missense_Mutation p.R695H 0.38 deleterious(0) probably_damaging(0.965) TCGA-BR-8680-01 2 21225916 21225916 G A APOB Silent p.I4126I 0.31 TCGA-BR-8680-01 2 21229095 21229095 T G APOB Missense_Mutation p.N3549H 0.36 possibly_damaging(0.873) TCGA-BR-8680-01 2 21231795 21231795 C T APOB Missense_Mutation p.E2649K 0.31 benign(0.265) TCGA-BR-8680-01 2 21233570 21233570 A C APOB Missense_Mutation p.F2057C 0.33 possibly_damaging(0.781) TCGA-BR-8680-01 2 21235442 21235442 G A APOB Missense_Mutation p.S1433L 0.35 probably_damaging(0.992) TCGA-BR-8680-01 2 21238325 21238325 G A APOB Missense_Mutation p.S1142L 0.28 benign(0.006) TCGA-BR-8680-01 2 21242777 21242777 G T APOB Silent p.G939G 0.29 TCGA-BR-8680-01 2 212812260 212812260 G A ERBB4 Missense_Mutation p.R106C 0.31 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 2 212989563 212989563 G A ERBB4 Missense_Mutation p.R50C 0.33 deleterious(0.01) possibly_damaging(0.545) TCGA-BR-8680-01 2 214181952 214181952 A C SPAG16 Missense_Mutation p.L136F 0.37 tolerated(0.12) benign(0.058) TCGA-BR-8680-01 2 215917230 215917230 C T ABCA12 Missense_Mutation p.R163Q 0.34 tolerated(0.61) benign(0.001) TCGA-BR-8680-01 2 216242982 216242982 C T FN1 Missense_Mutation p.A1876T 0.31 deleterious(0.01) possibly_damaging(0.453) TCGA-BR-8680-01 2 216274830 216274830 G T FN1 Missense_Mutation p.S650Y 0.31 deleterious(0) benign(0.366) TCGA-BR-8680-01 2 216809618 216809618 C A MREG Nonsense_Mutation p.E205* 0.40 TCGA-BR-8680-01 2 216809669 216809669 G A MREG Nonsense_Mutation p.R188* 0.36 TCGA-BR-8680-01 2 217123859 217123859 A C MARCH4 3'UTR 0.17 TCGA-BR-8680-01 2 217279808 217279808 A G SMARCAL1 Silent p.A127A 0.31 TCGA-BR-8680-01 2 218700848 218700848 A G TNS1 Missense_Mutation p.S907P 0.32 tolerated(0.15) benign(0.047) TCGA-BR-8680-01 2 218999817 218999817 C T CXCR2 Missense_Mutation p.A98V 0.36 deleterious(0) probably_damaging(0.998) TCGA-BR-8680-01 2 219000231 219000231 G A CXCR2 Missense_Mutation p.R236H 0.38 tolerated(0.66) benign(0.013) TCGA-BR-8680-01 2 219267801 219267801 G A CTDSP1 Missense_Mutation p.R141Q 0.41 deleterious(0.04) possibly_damaging(0.846) TCGA-BR-8680-01 2 219321865 219321865 G A USP37 Missense_Mutation p.S888L 0.37 deleterious(0) possibly_damaging(0.804) TCGA-BR-8680-01 2 219341566 219341566 T G USP37 Missense_Mutation p.E680D 0.15 tolerated(0.14) benign(0.022) TCGA-BR-8680-01 2 219507616 219507616 G A ZNF142 Missense_Mutation p.S1208L 0.30 deleterious(0.02) possibly_damaging(0.651) TCGA-BR-8680-01 2 219509723 219509723 G A ZNF142 Missense_Mutation p.R506W 0.30 deleterious(0) possibly_damaging(0.689) TCGA-BR-8680-01 2 219526163 219526163 C T BCS1L Nonsense_Mutation p.R119* 0.33 TCGA-BR-8680-01 2 219563571 219563571 G T STK36 Nonsense_Mutation p.E1102* 0.38 TCGA-BR-8680-01 2 219566834 219566834 G T STK36 3'UTR 0.38 TCGA-BR-8680-01 2 219617583 219617583 G A TTLL4 Missense_Mutation p.R1025Q 0.40 deleterious(0) probably_damaging(0.986) TCGA-BR-8680-01 2 219754759 219754759 G A WNT10A Missense_Mutation p.A144T 0.28 tolerated(0.07) possibly_damaging(0.736) TCGA-BR-8680-01 2 219903158 219903158 G A CCDC108 Missense_Mutation p.A99V 0.27 tolerated_low_confidence(0.09) benign(0.129) TCGA-BR-8680-01 2 220087075 220087075 G A ATG9A Missense_Mutation p.A649V 0.31 tolerated(0.14) possibly_damaging(0.886) TCGA-BR-8680-01 2 220162693 220162693 G A PTPRN Missense_Mutation p.R601W 0.24 deleterious(0) probably_damaging(0.972) TCGA-BR-8680-01 2 220238995 220238995 G T DNPEP 3'UTR 0.27 TCGA-BR-8680-01 2 220309737 220309737 G A SPEG Silent p.R223R 0.68 TCGA-BR-8680-01 2 222308273 222308273 G A EPHA4 Nonsense_Mutation p.R610* 0.38 TCGA-BR-8680-01 2 222433473 222433473 C A EPHA4 Nonsense_Mutation p.E42* 0.23 TCGA-BR-8680-01 2 223066064 223066064 C A PAX3 Intron 0.35 TCGA-BR-8680-01 2 223096870 223096870 C A PAX3 Missense_Mutation p.R240I 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8680-01 2 223783787 223783787 A C ACSL3 Silent p.I224I 0.35 TCGA-BR-8680-01 2 226446931 226446931 C T NYAP2 Silent p.A266A 0.28 TCGA-BR-8680-01 2 227661066 227661066 G A IRS1 Missense_Mutation p.R797C 0.28 deleterious(0) probably_damaging(0.993) TCGA-BR-8680-01 2 227946898 227946898 C T COL4A4 Silent p.K543K 0.34 TCGA-BR-8680-01 2 227946900 227946900 T G COL4A4 Missense_Mutation p.K543Q 0.35 probably_damaging(0.937) TCGA-BR-8680-01 2 228012295 228012295 C T COL4A4 5'UTR 0.38 TCGA-BR-8680-01 2 228163401 228163401 C T COL4A3 Missense_Mutation p.A1252V 0.34 unknown(0) TCGA-BR-8680-01 2 228163523 228163523 C T COL4A3 Missense_Mutation p.R1293C 0.31 unknown(0) TCGA-BR-8680-01 2 228563936 228563936 C T SLC19A3 Silent p.A165A 0.22 TCGA-BR-8680-01 2 228769707 228769707 G A DAW1 Silent p.G237G 0.35 TCGA-BR-8680-01 2 228788706 228788706 G A DAW1 3'UTR 0.41 TCGA-BR-8680-01 2 228886519 228886519 T C SPHKAP Missense_Mutation p.D202G 0.24 deleterious(0) probably_damaging(0.98) TCGA-BR-8680-01 2 228886659 228886659 G A SPHKAP Silent p.C155C 0.43 TCGA-BR-8680-01 2 230253102 230253102 G A DNER Silent p.C578C 0.29 TCGA-BR-8680-01 2 230910719 230910719 C T SLC16A14 Missense_Mutation p.D375N 0.26 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 2 230911332 230911332 G A SLC16A14 Silent p.F170F 0.34 TCGA-BR-8680-01 2 231042332 231042332 G A SP110 Silent p.V504V 0.35 TCGA-BR-8680-01 2 231081618 231081618 C T SP110 Missense_Mutation p.E9K 0.48 tolerated(0.17) possibly_damaging(0.486) TCGA-BR-8680-01 2 231249977 231249977 A C SP140L Missense_Mutation p.K248Q 0.34 tolerated(0.1) possibly_damaging(0.593) TCGA-BR-8680-01 2 231380147 231380147 C T SP100 Intron 0.40 TCGA-BR-8680-01 2 232209877 232209877 T G ARMC9 3'UTR 0.30 TCGA-BR-8680-01 2 232262514 232262514 T C B3GNT7 Silent p.S28S 0.36 TCGA-BR-8680-01 2 232320835 232320835 G T NCL Missense_Mutation p.T573N 0.27 possibly_damaging(0.566) TCGA-BR-8680-01 2 232373806 232373806 G A LINC00471 RNA 0.28 TCGA-BR-8680-01 2 233400167 233400167 C T CHRND 3'UTR 0.54 TCGA-BR-8680-01 2 233407646 233407646 C T CHRNG Missense_Mutation p.A220V 0.32 tolerated(0.3) benign(0.003) TCGA-BR-8680-01 2 233655451 233655451 T C GIGYF2 Silent p.R274R 0.33 TCGA-BR-8680-01 2 234217909 234217909 C T SAG Missense_Mutation p.S25L 0.36 deleterious(0.01) possibly_damaging(0.689) TCGA-BR-8680-01 2 234243632 234243632 T G SAG Silent p.T277T 0.38 TCGA-BR-8680-01 2 234255608 234255608 G A SAG 3'UTR 0.50 TCGA-BR-8680-01 2 234394260 234394260 T C USP40 Missense_Mutation p.T1152A 0.35 tolerated(0.14) benign(0.007) TCGA-BR-8680-01 2 234580975 234580975 A C UGT1A9 Missense_Mutation p.K132T 0.32 tolerated(0.21) benign(0.369) TCGA-BR-8680-01 2 234581149 234581149 T C UGT1A9 Missense_Mutation p.V190A 0.32 deleterious(0.02) possibly_damaging(0.617) TCGA-BR-8680-01 2 234590891 234590891 G A UGT1A7 Missense_Mutation p.R103Q 0.29 tolerated(0.6) benign(0.004) TCGA-BR-8680-01 2 234602500 234602500 G T UGT1A6 Missense_Mutation p.D284Y 0.32 deleterious(0) possibly_damaging(0.447) TCGA-BR-8680-01 2 234638079 234638079 A G UGT1A3 Missense_Mutation p.T103A 0.35 tolerated(0.41) benign(0.232) TCGA-BR-8680-01 2 234975882 234975882 G A SPP2 Missense_Mutation p.E172K 0.30 tolerated(0.3) benign(0.02) TCGA-BR-8680-01 2 235404458 235404458 C T ARL4C 3'UTR 0.24 TCGA-BR-8680-01 2 235951091 235951091 C T SH3BP4 Nonsense_Mutation p.R560* 0.33 TCGA-BR-8680-01 2 236659049 236659049 A C AGAP1 Missense_Mutation p.K197T 0.34 deleterious(0.02) benign(0.159) TCGA-BR-8680-01 2 237172856 237172856 C T ASB18 Missense_Mutation p.A45T 0.38 deleterious(0.05) possibly_damaging(0.554) TCGA-BR-8680-01 2 238275778 238275778 G T COL6A3 Missense_Mutation p.N1684K 0.14 probably_damaging(0.999) TCGA-BR-8680-01 2 238287555 238287555 C T COL6A3 Missense_Mutation p.E741K 0.27 possibly_damaging(0.826) TCGA-BR-8680-01 2 238289942 238289942 T G COL6A3 Missense_Mutation p.K505Q 0.33 probably_damaging(0.99) TCGA-BR-8680-01 2 238303336 238303336 C A COL6A3 Missense_Mutation p.E201D 0.32 probably_damaging(0.988) TCGA-BR-8680-01 2 238726139 238726139 G T RBM44 Nonsense_Mutation p.E194* 0.58 TCGA-BR-8680-01 2 238726184 238726184 G A RBM44 Missense_Mutation p.A209T 0.32 tolerated(1) benign(0.001) TCGA-BR-8680-01 2 238726378 238726378 A C RBM44 Missense_Mutation p.E273D 0.32 tolerated(0.29) benign(0.05) TCGA-BR-8680-01 2 238940868 238940868 C T UBE2F Silent p.V139V 0.24 TCGA-BR-8680-01 2 239049818 239049818 C T KLHL30 Silent p.F141F 0.14 TCGA-BR-8680-01 2 239147925 239147925 T C HES6 Intron 0.18 TCGA-BR-8680-01 2 239161703 239161703 C T PER2 Silent p.S987S 0.38 TCGA-BR-8680-01 2 239247082 239247082 G A TRAF3IP1 Silent p.T381T 0.45 TCGA-BR-8680-01 2 24033263 24033263 T G ATAD2B Silent p.R793R 0.31 TCGA-BR-8680-01 2 240957903 240957903 T C NDUFA10 Intron 0.35 TCGA-BR-8680-01 2 242089964 242089964 T C PPP1R7 Splice_Site p.X18_splice 0.28 TCGA-BR-8680-01 2 242151518 242151518 G A ANO7 Missense_Mutation p.R578H 0.26 deleterious(0.04) possibly_damaging(0.796) TCGA-BR-8680-01 2 242163334 242163334 G A ANO7 Silent p.T903T 0.32 TCGA-BR-8680-01 2 24285954 24285954 G A FKBP1B Silent p.A73A 0.39 TCGA-BR-8680-01 2 24413542 24413542 C T FAM228A 3'UTR 0.55 TCGA-BR-8680-01 2 24888773 24888773 G T NCOA1 Missense_Mutation p.R82I 0.26 deleterious(0) probably_damaging(0.927) TCGA-BR-8680-01 2 25050927 25050927 A G ADCY3 Missense_Mutation p.V759A 0.44 deleterious(0.01) benign(0.338) TCGA-BR-8680-01 2 25170361 25170361 A G DNAJC27 3'UTR 0.33 TCGA-BR-8680-01 2 25965983 25965983 G A ASXL2 Missense_Mutation p.R1075W 0.28 deleterious(0) possibly_damaging(0.776) TCGA-BR-8680-01 2 26414037 26414037 A C HADHA 3'UTR 0.37 TCGA-BR-8680-01 2 26804180 26804180 C T CIB4 3'UTR 0.32 TCGA-BR-8680-01 2 27275836 27275836 C T AGBL5 Missense_Mutation p.R4C 0.45 deleterious(0.01) benign(0.099) TCGA-BR-8680-01 2 27307347 27307347 A G EMILIN1 Silent p.G835G 0.27 TCGA-BR-8680-01 2 27346824 27346824 G A ABHD1 Missense_Mutation p.S3N 0.34 deleterious_low_confidence(0.02) benign(0.007) TCGA-BR-8680-01 2 27429798 27429798 G A SLC5A6 Nonsense_Mutation p.R136* 0.38 TCGA-BR-8680-01 2 27447234 27447234 G A CAD Missense_Mutation p.R377H 0.33 tolerated(0.63) benign(0.002) TCGA-BR-8680-01 2 27480771 27480771 A G SLC30A3 Splice_Site p.X193_splice 0.43 TCGA-BR-8680-01 2 27528963 27528963 A G TRIM54 Missense_Mutation p.I329V 0.34 deleterious(0.04) benign(0.281) TCGA-BR-8680-01 2 27604548 27604548 C T PPM1G Missense_Mutation p.R520Q 0.31 deleterious_low_confidence(0.03) benign(0.081) TCGA-BR-8680-01 2 27608664 27608664 C T PPM1G Missense_Mutation p.R120Q 0.24 tolerated(0.11) benign(0.238) TCGA-BR-8680-01 2 27662758 27662758 A G NRBP1 Silent p.G343G 0.40 TCGA-BR-8680-01 2 27682647 27682647 C A IFT172 Missense_Mutation p.E857D 0.31 deleterious(0) probably_damaging(0.975) TCGA-BR-8680-01 2 27745360 27745360 G A GCKR Missense_Mutation p.E536K 0.43 tolerated(0.21) benign(0.036) TCGA-BR-8680-01 2 27802287 27802287 A G C2orf16 Missense_Mutation p.I950V 0.29 tolerated(0.23) possibly_damaging(0.492) TCGA-BR-8680-01 2 27803866 27803866 G A C2orf16 Missense_Mutation p.R1476K 0.32 tolerated(0.21) benign(0.009) TCGA-BR-8680-01 2 27873033 27873033 C T GPN1 Missense_Mutation p.S378L 0.19 tolerated(0.15) benign(0.075) TCGA-BR-8680-01 2 28843160 28843160 C T PLB1 Missense_Mutation p.S1115F 0.30 tolerated(0.71) benign(0.071) TCGA-BR-8680-01 2 29152516 29152516 G A WDR43 Silent p.T459T 0.23 TCGA-BR-8680-01 2 29296217 29296217 G T C2orf71 Missense_Mutation p.A304E 0.34 deleterious(0) probably_damaging(0.962) TCGA-BR-8680-01 2 29356672 29356672 G A CLIP4 Silent p.S173S 0.32 TCGA-BR-8680-01 2 29404458 29404458 G A CLIP4 Missense_Mutation p.R606H 0.38 tolerated(0.11) benign(0.051) TCGA-BR-8680-01 2 29404707 29404707 G T CLIP4 Missense_Mutation p.R689I 0.31 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 2 29754886 29754886 G A ALK Missense_Mutation p.S350L 0.25 deleterious(0.01) benign(0.251) TCGA-BR-8680-01 2 30480466 30480466 G A LBH Silent p.A99A 0.31 TCGA-BR-8680-01 2 30785083 30785083 G T LCLAT1 Missense_Mutation p.D184Y 0.31 deleterious(0.03) benign(0.389) TCGA-BR-8680-01 2 31168724 31168724 C A GALNT14 Missense_Mutation p.V228L 0.32 deleterious(0) probably_damaging(0.996) TCGA-BR-8680-01 2 31590912 31590912 C A XDH Missense_Mutation p.K704N 0.34 deleterious(0.03) benign(0.007) TCGA-BR-8680-01 2 32094943 32094943 T G MEMO1 Silent p.R246R 0.35 TCGA-BR-8680-01 2 32341202 32341202 A C SPAST Missense_Mutation p.K340T 0.30 tolerated(0.28) benign(0.26) TCGA-BR-8680-01 2 32399179 32399179 C T SLC30A6 Silent p.G46G 0.30 TCGA-BR-8680-01 2 32475614 32475614 T G NLRC4 Missense_Mutation p.K440T 0.34 tolerated(0.19) benign(0.064) TCGA-BR-8680-01 2 32475815 32475815 T G NLRC4 Missense_Mutation p.K373T 0.36 deleterious(0) probably_damaging(0.998) TCGA-BR-8680-01 2 32515614 32515614 G T YIPF4 Nonsense_Mutation p.E48* 0.31 TCGA-BR-8680-01 2 32640623 32640623 A C BIRC6 Missense_Mutation p.E755A 0.25 benign(0.112) TCGA-BR-8680-01 2 32715152 32715152 A C BIRC6 Missense_Mutation p.T2714P 0.34 benign(0.262) TCGA-BR-8680-01 2 32750029 32750029 G T BIRC6 Nonsense_Mutation p.E3900* 0.33 TCGA-BR-8680-01 2 32754810 32754810 A C BIRC6 Missense_Mutation p.T4005P 0.35 benign(0.403) TCGA-BR-8680-01 2 32768549 32768549 G T BIRC6 Missense_Mutation p.R4178I 0.42 probably_damaging(0.989) TCGA-BR-8680-01 2 32820140 32820140 A C BIRC6 Missense_Mutation p.K4514T 0.29 benign(0.143) TCGA-BR-8680-01 2 32983575 32983575 A C TTC27 Missense_Mutation p.N557H 0.39 deleterious(0.01) probably_damaging(0.984) TCGA-BR-8680-01 2 33002962 33002962 T G TTC27 Missense_Mutation p.F565C 0.24 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 2 33745024 33745024 G A RASGRP3 Missense_Mutation p.R60Q 0.25 tolerated(0.85) benign(0.005) TCGA-BR-8680-01 2 36775916 36775916 T G CRIM1 3'UTR 0.36 TCGA-BR-8680-01 2 37152306 37152306 A C STRN Missense_Mutation p.L94V 0.27 deleterious(0.02) possibly_damaging(0.665) TCGA-BR-8680-01 2 3729284 3729284 A C ALLC Missense_Mutation p.E120A 0.24 deleterious(0.03) possibly_damaging(0.9) TCGA-BR-8680-01 2 37394979 37394979 T C SULT6B1 3'UTR 0.45 TCGA-BR-8680-01 2 37410583 37410583 G A SULT6B1 Silent p.F91F 0.30 TCGA-BR-8680-01 2 37459390 37459390 T C NDUFAF7 Missense_Mutation p.V66A 0.26 tolerated(0.1) benign(0.047) TCGA-BR-8680-01 2 37471104 37471104 A C NDUFAF7 Missense_Mutation p.E260D 0.42 tolerated(0.19) benign(0.155) TCGA-BR-8680-01 2 37513463 37513463 C T PRKD3 Missense_Mutation p.R256H 0.27 deleterious(0.02) probably_damaging(0.978) TCGA-BR-8680-01 2 37543449 37543449 A C PRKD3 Silent p.V73V 0.34 TCGA-BR-8680-01 2 37873863 37873863 G A CDC42EP3 5'UTR 0.43 TCGA-BR-8680-01 2 38178913 38178913 A C RMDN2 Missense_Mutation p.K185N 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.608) TCGA-BR-8680-01 2 38523628 38523628 A C ATL2 Intron 0.42 TCGA-BR-8680-01 2 38956751 38956751 C T GALM Missense_Mutation p.L230F 0.28 deleterious(0) probably_damaging(0.991) TCGA-BR-8680-01 2 38959022 38959022 A G GALM Missense_Mutation p.T308A 0.37 deleterious(0) probably_damaging(0.935) TCGA-BR-8680-01 2 39281904 39281904 C T SOS1 Missense_Mutation p.E191K 0.32 tolerated(0.21) possibly_damaging(0.664) TCGA-BR-8680-01 2 39492390 39492390 A C MAP4K3 Missense_Mutation p.V697G 0.31 deleterious(0) benign(0.243) TCGA-BR-8680-01 2 40405582 40405582 C A SLC8A1 Missense_Mutation p.K620N 0.28 tolerated(0.15) benign(0.03) TCGA-BR-8680-01 2 40655689 40655689 C T SLC8A1 Missense_Mutation p.E578K 0.31 deleterious(0.02) possibly_damaging(0.858) TCGA-BR-8680-01 2 40656049 40656049 C T SLC8A1 Missense_Mutation p.E458K 0.37 tolerated(0.18) benign(0.165) TCGA-BR-8680-01 2 42720290 42720290 C T KCNG3 Missense_Mutation p.D118N 0.32 tolerated(0.06) possibly_damaging(0.526) TCGA-BR-8680-01 2 43779352 43779352 A C THADA Nonsense_Mutation p.L934* 0.42 TCGA-BR-8680-01 2 43783389 43783389 A C THADA Intron 0.11 TCGA-BR-8680-01 2 44153069 44153069 A C LRPPRC Missense_Mutation p.L923R 0.33 deleterious(0) probably_damaging(0.996) TCGA-BR-8680-01 2 44539839 44539839 G T SLC3A1 Nonsense_Mutation p.E483* 0.35 TCGA-BR-8680-01 2 44999207 44999207 A C CAMKMT Missense_Mutation p.E309D 0.39 deleterious(0.01) benign(0.444) TCGA-BR-8680-01 2 45235953 45235953 G A SIX2 Silent p.R99R 0.27 TCGA-BR-8680-01 2 45645648 45645648 T G SRBD1 Missense_Mutation p.K730T 0.42 deleterious(0) probably_damaging(0.948) TCGA-BR-8680-01 2 45812864 45812864 A G SRBD1 Missense_Mutation p.I233T 0.36 deleterious(0) probably_damaging(0.986) TCGA-BR-8680-01 2 46815305 46815305 C A PIGF Intron 0.11 TCGA-BR-8680-01 2 47132478 47132478 G A MCFD2 3'UTR 0.56 TCGA-BR-8680-01 2 47710069 47710069 G A MSH2 Missense_Mutation p.R929Q 0.45 deleterious(0.03) benign(0.231) TCGA-BR-8680-01 2 48026079 48026079 G A MSH6 Silent p.T319T 0.32 TCGA-BR-8680-01 2 48573716 48573716 T G FOXN2 Missense_Mutation p.I121M 0.31 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 2 48734422 48734422 A C PPP1R21 Missense_Mutation p.E661D 0.25 tolerated(0.43) benign(0.011) TCGA-BR-8680-01 2 48809412 48809412 T C STON1-GTF2A1L Missense_Mutation p.V547A 0.27 deleterious(0) possibly_damaging(0.578) TCGA-BR-8680-01 2 48906597 48906597 T C STON1-GTF2A1L 3'UTR 0.32 TCGA-BR-8680-01 2 48914804 48914804 A G LHCGR 3'UTR 0.31 TCGA-BR-8680-01 2 48915276 48915276 G A LHCGR Nonsense_Mutation p.R554* 0.27 TCGA-BR-8680-01 2 49216184 49216184 T G FSHR Missense_Mutation p.Q152H 0.32 tolerated(0.35) benign(0.355) TCGA-BR-8680-01 2 50464092 50464092 G T NRXN1 Silent p.I1167I 0.27 TCGA-BR-8680-01 2 50779867 50779867 G T NRXN1 Missense_Mutation p.D579E 0.38 deleterious(0) probably_damaging(0.978) TCGA-BR-8680-01 2 50850557 50850557 G T NRXN1 Silent p.V376V 0.28 TCGA-BR-8680-01 2 54028678 54028678 C A ERLEC1 Missense_Mutation p.L224I 0.44 deleterious(0.02) possibly_damaging(0.883) TCGA-BR-8680-01 2 54081897 54081897 C T GPR75 5'UTR 0.29 TCGA-BR-8680-01 2 54114544 54114544 C T PSME4 Silent p.S1527S 0.34 TCGA-BR-8680-01 2 54117282 54117282 C T PSME4 Missense_Mutation p.E1419K 0.29 deleterious(0) probably_damaging(0.992) TCGA-BR-8680-01 2 54154547 54154547 C A PSME4 Missense_Mutation p.R526I 0.29 tolerated(0.17) benign(0.058) TCGA-BR-8680-01 2 54159188 54159188 C A PSME4 Missense_Mutation p.R367I 0.22 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 2 54365782 54365782 G T ACYP2 Nonsense_Mutation p.E28* 0.43 TCGA-BR-8680-01 2 54481985 54481985 C T TSPYL6 3'UTR 0.33 TCGA-BR-8680-01 2 54839399 54839399 G A SPTBN1 Silent p.G134G 0.31 TCGA-BR-8680-01 2 54858050 54858050 A G SPTBN1 Missense_Mutation p.S956G 0.30 tolerated(0.61) benign(0.004) TCGA-BR-8680-01 2 54885016 54885016 G A SPTBN1 Missense_Mutation p.A2026T 0.24 deleterious(0) probably_damaging(0.937) TCGA-BR-8680-01 2 55449628 55449628 G A CLHC1 Intron 0.37 TCGA-BR-8680-01 2 55546112 55546112 G A CCDC88A Missense_Mutation p.A1063V 0.33 tolerated(0.08) probably_damaging(0.991) TCGA-BR-8680-01 2 55561360 55561360 T C CCDC88A Missense_Mutation p.N866S 0.34 tolerated(0.45) probably_damaging(0.953) TCGA-BR-8680-01 2 55561901 55561901 T C CCDC88A Missense_Mutation p.T686A 0.22 tolerated(0.37) benign(0.006) TCGA-BR-8680-01 2 55646259 55646259 C T CCDC88A 5'UTR 0.39 TCGA-BR-8680-01 2 55772048 55772048 G T CCDC104 Missense_Mutation p.M311I 0.27 tolerated(0.43) benign(0.001) TCGA-BR-8680-01 2 55825627 55825627 A C SMEK2 Silent p.V282V 0.07 TCGA-BR-8680-01 2 56149545 56149545 T C EFEMP1 Missense_Mutation p.T11A 0.34 tolerated(0.54) benign(0.114) TCGA-BR-8680-01 2 58386762 58386762 T G VRK2 Silent p.V487V 0.32 TCGA-BR-8680-01 2 60687443 60687443 A C BCL11A 3'UTR 0.36 TCGA-BR-8680-01 2 61343163 61343163 A G KIAA1841 Silent p.V598V 0.28 TCGA-BR-8680-01 2 61439030 61439030 A C USP34 Missense_Mutation p.F2906C 0.38 deleterious(0) probably_damaging(0.971) TCGA-BR-8680-01 2 61710173 61710173 C T XPO1 Missense_Mutation p.A911T 0.37 tolerated(0.27) possibly_damaging(0.603) TCGA-BR-8680-01 2 61722723 61722723 C T XPO1 Missense_Mutation p.R305Q 0.26 tolerated(0.16) benign(0.008) TCGA-BR-8680-01 2 62067568 62067568 T G FAM161A Missense_Mutation p.M191L 0.29 tolerated(0.35) benign(0.037) TCGA-BR-8680-01 2 63272496 63272496 G A EHBP1 Intron 0.52 TCGA-BR-8680-01 2 64778749 64778749 C T AFTPH Silent p.F47F 0.14 TCGA-BR-8680-01 2 64778760 64778760 A G AFTPH Missense_Mutation p.D51G 0.34 tolerated(0.21) benign(0.012) TCGA-BR-8680-01 2 64778948 64778948 G T AFTPH Nonsense_Mutation p.E114* 0.35 TCGA-BR-8680-01 2 64779504 64779504 T C AFTPH Missense_Mutation p.V299A 0.40 deleterious(0) benign(0.138) TCGA-BR-8680-01 2 64794728 64794728 C T AFTPH Silent p.F656F 0.35 TCGA-BR-8680-01 2 65473846 65473846 A C ACTR2 Silent p.P121P 0.37 TCGA-BR-8680-01 2 66667099 66667099 G A MEIS1 Missense_Mutation p.A122T 0.33 tolerated(0.19) benign(0.045) TCGA-BR-8680-01 2 68765080 68765080 A G APLF Missense_Mutation p.N294S 0.28 tolerated(0.47) benign(0.01) TCGA-BR-8680-01 2 69046560 69046560 G A ARHGAP25 Intron 0.56 TCGA-BR-8680-01 2 69092698 69092698 C T BMP10 3'UTR 0.50 TCGA-BR-8680-01 2 69092776 69092776 C T BMP10 Missense_Mutation p.C421Y 0.24 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 2 69093327 69093327 T C BMP10 Silent p.G237G 0.32 TCGA-BR-8680-01 2 69409700 69409700 C T ANTXR1 Missense_Mutation p.P421S 0.30 deleterious(0.01) probably_damaging(1) TCGA-BR-8680-01 2 69586407 69586407 T G GFPT1 Missense_Mutation p.K134T 0.46 tolerated(0.78) benign(0.021) TCGA-BR-8680-01 2 69741737 69741737 C T AAK1 Missense_Mutation p.A548T 0.20 tolerated(0.31) possibly_damaging(0.483) TCGA-BR-8680-01 2 70096947 70096947 C T GMCL1 Missense_Mutation p.P439S 0.36 tolerated(0.47) benign(0.007) TCGA-BR-8680-01 2 70162562 70162562 T C MXD1 Silent p.L95L 0.39 TCGA-BR-8680-01 2 70187699 70187699 A C ASPRV1 3'UTR 0.33 TCGA-BR-8680-01 2 70441551 70441551 A G TIA1 Missense_Mutation p.Y322H 0.24 deleterious(0.01) benign(0.062) TCGA-BR-8680-01 2 70444014 70444014 C T TIA1 Intron 0.35 TCGA-BR-8680-01 2 70454891 70454891 G A TIA1 Missense_Mutation p.A125V 0.23 deleterious(0.01) benign(0.425) TCGA-BR-8680-01 2 70503962 70503962 G A PCYOX1 Missense_Mutation p.R319Q 0.27 tolerated(0.67) benign(0.055) TCGA-BR-8680-01 2 71163176 71163176 G A ATP6V1B1 Missense_Mutation p.R31Q 0.42 tolerated_low_confidence(0.15) benign(0.01) TCGA-BR-8680-01 2 71360659 71360659 G T MPHOSPH10 Missense_Mutation p.D241Y 0.30 tolerated(1) possibly_damaging(0.663) TCGA-BR-8680-01 2 71653942 71653942 T G ZNF638 Nonsense_Mutation p.L1648* 0.32 TCGA-BR-8680-01 2 71766360 71766360 G T DYSF Nonsense_Mutation p.E523* 0.32 TCGA-BR-8680-01 2 71797810 71797810 G A DYSF Missense_Mutation p.R1056Q 0.36 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 2 7179884 7179884 C A RNF144A Missense_Mutation p.P291H 0.27 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BR-8680-01 2 72359686 72359686 C T CYP26B1 Silent p.A403A 0.46 TCGA-BR-8680-01 2 72742235 72742235 C T EXOC6B Silent p.E312E 0.56 TCGA-BR-8680-01 2 73449025 73449025 A C SMYD5 Missense_Mutation p.E203D 0.40 tolerated(0.1) benign(0.026) TCGA-BR-8680-01 2 73477500 73477500 G A CCT7 Silent p.E379E 0.30 TCGA-BR-8680-01 2 73635812 73635812 A C ALMS1 Missense_Mutation p.Q129H 0.12 possibly_damaging(0.756) TCGA-BR-8680-01 2 73675812 73675812 G A ALMS1 Missense_Mutation p.E719K 0.31 benign(0.279) TCGA-BR-8680-01 2 73679414 73679414 T G ALMS1 Silent p.V1919V 0.28 TCGA-BR-8680-01 2 73680757 73680757 G A ALMS1 Missense_Mutation p.S2367N 0.24 benign(0.015) TCGA-BR-8680-01 2 73717091 73717091 C T ALMS1 Nonsense_Mutation p.R2668* 0.34 TCGA-BR-8680-01 2 73777441 73777441 A C ALMS1 Missense_Mutation p.T3318P 0.36 probably_damaging(0.999) TCGA-BR-8680-01 2 73826650 73826650 T G ALMS1 Splice_Site p.X3889_splice 0.38 TCGA-BR-8680-01 2 73868397 73868397 C T NAT8 Missense_Mutation p.G120D 0.35 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 2 73868654 73868654 C T NAT8 Silent p.R34R 0.38 TCGA-BR-8680-01 2 74043935 74043935 T C C2orf78 Missense_Mutation p.V862A 0.38 deleterious(0) possibly_damaging(0.716) TCGA-BR-8680-01 2 74594897 74594897 C A DCTN1 Nonsense_Mutation p.E704* 0.39 TCGA-BR-8680-01 2 74746199 74746199 G T DQX1 Nonsense_Mutation p.C655* 0.30 TCGA-BR-8680-01 2 74754076 74754076 G A AUP1 Silent p.Y396Y 0.07 TCGA-BR-8680-01 2 74760921 74760921 A C LOXL3 Intron 0.25 TCGA-BR-8680-01 2 74901669 74901669 G A SEMA4F Silent p.T289T 0.40 TCGA-BR-8680-01 2 75113653 75113653 G A HK2 Missense_Mutation p.R691H 0.30 tolerated(0.1) benign(0.001) TCGA-BR-8680-01 2 75897301 75897301 G A GCFC2 Missense_Mutation p.A689V 0.29 deleterious(0.03) benign(0.245) TCGA-BR-8680-01 2 75921549 75921549 T C GCFC2 Missense_Mutation p.T280A 0.36 tolerated(0.29) benign(0.021) TCGA-BR-8680-01 2 84676772 84676772 C T SUCLG1 Splice_Site p.X67_splice 0.23 TCGA-BR-8680-01 2 84785047 84785047 T C DNAH6 Silent p.I597I 0.30 TCGA-BR-8680-01 2 85570250 85570250 A C RETSAT 3'UTR 0.15 TCGA-BR-8680-01 2 85981435 85981435 A C ATOH8 Missense_Mutation p.K41N 0.24 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-BR-8680-01 2 86270116 86270116 C T POLR1A Missense_Mutation p.R1113H 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-BR-8680-01 2 88082726 88082726 T G RGPD2 Missense_Mutation p.N1273H 0.38 deleterious(0) possibly_damaging(0.844) TCGA-BR-8680-01 2 89104032 89104032 A G ANKRD36BP2 RNA 0.46 TCGA-BR-8680-01 2 89111204 89111204 G A MIR4436A 5'Flank 0.23 TCGA-BR-8680-01 2 89339731 89339731 T G IGKV1-12 Missense_Mutation p.N114T 0.28 tolerated(0.39) benign(0.011) TCGA-BR-8680-01 2 89987037 89987037 G A IGKV2D-29 Silent p.E106E 0.21 TCGA-BR-8680-01 2 90078270 90078270 G T IGKV3D-20 Missense_Mutation p.D103Y 0.27 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 2 90108555 90108555 G A IGKV6D-41 Missense_Mutation p.R9Q 0.28 tolerated(0.29) benign(0.007) TCGA-BR-8680-01 2 90139576 90139576 A G IGKV1D-16 Missense_Mutation p.Y116C 0.25 tolerated(0.08) benign(0.438) TCGA-BR-8680-01 2 95601102 95601102 T C AC097374.2 RNA 0.29 TCGA-BR-8680-01 2 95766633 95766633 T C MRPS5 Missense_Mutation p.N273D 0.40 deleterious(0) probably_damaging(0.977) TCGA-BR-8680-01 2 95815627 95815627 C A ZNF514 Missense_Mutation p.K201N 0.37 deleterious(0.03) benign(0.099) TCGA-BR-8680-01 2 96048135 96048135 C T KCNIP3 Missense_Mutation p.A189V 0.50 deleterious(0.01) possibly_damaging(0.535) TCGA-BR-8680-01 2 96687180 96687180 C T GPAT2 3'Flank 0.33 TCGA-BR-8680-01 2 96781139 96781139 C T ADRA2B Silent p.S250S 0.40 TCGA-BR-8680-01 2 96992397 96992397 G A ITPRIPL1 Missense_Mutation p.A18T 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8680-01 2 97749770 97749770 A C FAHD2B Missense_Mutation p.F266C 0.34 tolerated(0.08) probably_damaging(0.997) TCGA-BR-8680-01 2 97784210 97784211 - A ANKRD36 Frame_Shift_Ins p.L150Tfs*9 0.16 TCGA-BR-8680-01 2 98165944 98165944 A G ANKRD36B RNA 0.46 TCGA-BR-8680-01 2 98341627 98341627 G A ZAP70 Missense_Mutation p.E159K 0.42 tolerated(0.08) probably_damaging(0.998) TCGA-BR-8680-01 2 98354262 98354262 G A ZAP70 Missense_Mutation p.E509K 0.27 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 2 98409193 98409193 G A TMEM131 Missense_Mutation p.S1267L 0.38 deleterious_low_confidence(0.05) benign(0.026) TCGA-BR-8680-01 2 98431743 98431743 A C TMEM131 Missense_Mutation p.F404C 0.23 tolerated(0.13) benign(0.002) TCGA-BR-8680-01 2 99779151 99779151 A G LIPT1 Missense_Mutation p.H244R 0.32 tolerated(0.66) benign(0.005) TCGA-BR-8680-01 2 99858912 99858912 G A LYG2 Missense_Mutation p.A185V 0.29 tolerated(0.45) benign(0.433) TCGA-BR-8680-01 2 99860437 99860437 A G LYG2 Intron 0.26 TCGA-BR-8680-01 2 99860495 99860496 - T LYG2 Frame_Shift_Ins p.F163Ifs*18 0.18 TCGA-BR-8680-01 3 100170651 100170651 T C LNP1 Missense_Mutation p.V82A 0.33 tolerated(0.34) benign(0.001) TCGA-BR-8680-01 3 100174638 100174638 G T LNP1 Missense_Mutation p.K135N 0.29 deleterious(0) possibly_damaging(0.904) TCGA-BR-8680-01 3 100328650 100328650 A C GPR128 5'UTR 0.37 TCGA-BR-8680-01 3 10050312 10050312 G A AC022007.5 RNA 0.53 TCGA-BR-8680-01 3 100511604 100511604 C A ABI3BP Missense_Mutation p.D633Y 0.37 tolerated(0.24) probably_damaging(0.99) TCGA-BR-8680-01 3 100605153 100605153 C T ABI3BP Missense_Mutation p.R166H 0.30 deleterious(0) possibly_damaging(0.522) TCGA-BR-8680-01 3 101395663 101395663 T G ZBTB11 Missense_Mutation p.K32N 0.29 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BR-8680-01 3 10146117 10146117 C T FANCD2OS Nonsense_Mutation p.W114* 0.28 TCGA-BR-8680-01 3 101520806 101520806 C T NXPE3 Missense_Mutation p.T274I 0.12 tolerated(0.14) probably_damaging(0.918) TCGA-BR-8680-01 3 10354352 10354352 G A SEC13 Missense_Mutation p.S76L 0.36 deleterious(0) probably_damaging(0.983) TCGA-BR-8680-01 3 108072323 108072323 C T HHLA2 Silent p.I38I 0.16 TCGA-BR-8680-01 3 108072555 108072555 G A HHLA2 Missense_Mutation p.E116K 0.28 deleterious(0.03) benign(0.227) TCGA-BR-8680-01 3 108096182 108096182 C T HHLA2 3'UTR 0.21 TCGA-BR-8680-01 3 108627035 108627035 A C GUCA1C Missense_Mutation p.F155C 0.34 deleterious(0) probably_damaging(0.954) TCGA-BR-8680-01 3 108677666 108677666 A C MORC1 3'UTR 0.28 TCGA-BR-8680-01 3 108751664 108751664 G T MORC1 Missense_Mutation p.L490I 0.35 deleterious(0) probably_damaging(0.986) TCGA-BR-8680-01 3 111312952 111312952 C A ZBED2 Nonsense_Mutation p.E33* 0.41 TCGA-BR-8680-01 3 111325554 111325554 A C CD96 Missense_Mutation p.E381D 0.26 tolerated(0.32) benign(0.062) TCGA-BR-8680-01 3 111671489 111671489 G A PHLDB2 Missense_Mutation p.R901Q 0.44 deleterious(0.03) benign(0.126) TCGA-BR-8680-01 3 111700772 111700772 C T ABHD10 Missense_Mutation p.A95V 0.33 deleterious(0) probably_damaging(0.991) TCGA-BR-8680-01 3 111898376 111898376 A G SLC9C1 Splice_Site p.X973_splice 0.38 TCGA-BR-8680-01 3 111921223 111921223 T G SLC9C1 Missense_Mutation p.Q732H 0.35 tolerated(0.1) benign(0.04) TCGA-BR-8680-01 3 112184788 112184788 A C BTLA 3'UTR 0.38 TCGA-BR-8680-01 3 112326098 112326098 G A CCDC80 Missense_Mutation p.R811C 0.30 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 3 112358445 112358445 C A CCDC80 Missense_Mutation p.R103I 0.28 deleterious_low_confidence(0) possibly_damaging(0.766) TCGA-BR-8680-01 3 112546460 112546460 A C CD200R1L Missense_Mutation p.L62V 0.28 tolerated(1) benign(0.145) TCGA-BR-8680-01 3 112564700 112564700 A C CD200R1L 5'UTR 0.45 TCGA-BR-8680-01 3 112730203 112730203 A T C3orf17 Nonsense_Mutation p.L201* 0.34 TCGA-BR-8680-01 3 112999414 112999414 G A BOC Missense_Mutation p.A738T 0.32 deleterious(0.02) benign(0.415) TCGA-BR-8680-01 3 113005647 113005647 A G BOC Missense_Mutation p.M1095V 0.29 tolerated_low_confidence(0.41) benign(0.001) TCGA-BR-8680-01 3 11301359 11301359 G T HRH1 Missense_Mutation p.K212N 0.29 deleterious(0.04) benign(0.169) TCGA-BR-8680-01 3 113321949 113321949 C T SIDT1 Silent p.F405F 0.26 TCGA-BR-8680-01 3 113322822 113322822 T C SIDT1 Missense_Mutation p.S427P 0.38 deleterious(0.02) probably_damaging(0.985) TCGA-BR-8680-01 3 113377699 113377699 A C KIAA2018 Missense_Mutation p.L944V 0.32 benign(0.146) TCGA-BR-8680-01 3 113378349 113378349 A G KIAA2018 Missense_Mutation p.V727A 0.27 benign(0.42) TCGA-BR-8680-01 3 113497631 113497631 G A ATP6V1A Missense_Mutation p.D11N 0.38 tolerated_low_confidence(0.06) benign(0.014) TCGA-BR-8680-01 3 113503563 113503563 C T ATP6V1A Silent p.G149G 0.35 TCGA-BR-8680-01 3 118621425 118621425 C T IGSF11 Missense_Mutation p.R413Q 0.12 deleterious(0) probably_damaging(0.997) TCGA-BR-8680-01 3 118931561 118931561 G T B4GALT4 Intron 0.34 TCGA-BR-8680-01 3 119087355 119087355 A G ARHGAP31 Missense_Mutation p.K114E 0.36 deleterious(0) probably_damaging(0.997) TCGA-BR-8680-01 3 119211258 119211258 T C POGLUT1 Silent p.I384I 0.35 TCGA-BR-8680-01 3 119219697 119219697 T G TIMMDC1 Missense_Mutation p.F117C 0.31 deleterious(0.02) probably_damaging(0.984) TCGA-BR-8680-01 3 119361312 119361312 T C POPDC2 3'UTR 0.27 TCGA-BR-8680-01 3 119631622 119631622 G A GSK3B Missense_Mutation p.S215L 0.29 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 3 119720900 119720900 C A GSK3B Missense_Mutation p.R92I 0.34 deleterious(0) probably_damaging(0.941) TCGA-BR-8680-01 3 119962867 119962867 G T GPR156 Missense_Mutation p.L27I 0.66 deleterious(0.03) benign(0.426) TCGA-BR-8680-01 3 120067729 120067729 C T LRRC58 Missense_Mutation p.S121N 0.27 tolerated(0.18) benign(0.014) TCGA-BR-8680-01 3 120389326 120389326 T C HGD Missense_Mutation p.D77G 0.29 tolerated(0.17) benign(0.021) TCGA-BR-8680-01 3 120469443 120469443 A C GTF2E1 Missense_Mutation p.K15T 0.32 deleterious(0) probably_damaging(0.989) TCGA-BR-8680-01 3 120760555 120760555 G T STXBP5L Missense_Mutation p.R99I 0.25 deleterious(0) possibly_damaging(0.602) TCGA-BR-8680-01 3 121215700 121215700 G A POLQ Missense_Mutation p.R745C 0.41 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 3 121238807 121238807 C T POLQ Missense_Mutation p.R460Q 0.34 deleterious(0) possibly_damaging(0.888) TCGA-BR-8680-01 3 121258410 121258410 T C POLQ Silent p.K167K 0.37 TCGA-BR-8680-01 3 121340587 121340587 A G FBXO40 Missense_Mutation p.N104S 0.38 tolerated(0.7) benign(0.041) TCGA-BR-8680-01 3 121341621 121341621 G A FBXO40 Missense_Mutation p.A449T 0.36 tolerated(0.44) benign(0.005) TCGA-BR-8680-01 3 121351279 121351279 G A HCLS1 Silent p.D380D 0.31 TCGA-BR-8680-01 3 121354598 121354598 C T HCLS1 Silent p.T225T 0.32 TCGA-BR-8680-01 3 121416180 121416180 C A GOLGB1 Nonsense_Mutation p.E1064* 0.27 TCGA-BR-8680-01 3 121417443 121417443 C A GOLGB1 Nonsense_Mutation p.E643* 0.35 TCGA-BR-8680-01 3 121417683 121417683 C T GOLGB1 Missense_Mutation p.E563K 0.31 probably_damaging(0.992) TCGA-BR-8680-01 3 121980561 121980561 C T CASR Nonsense_Mutation p.R227* 0.31 TCGA-BR-8680-01 3 122335919 122335919 C T PARP15 Missense_Mutation p.A303V 0.34 tolerated(0.13) possibly_damaging(0.448) TCGA-BR-8680-01 3 122340311 122340311 T G PARP15 Missense_Mutation p.F362V 0.35 deleterious(0.01) benign(0.096) TCGA-BR-8680-01 3 122345735 122345735 C A PARP15 Missense_Mutation p.F431L 0.34 deleterious(0) possibly_damaging(0.77) TCGA-BR-8680-01 3 122418266 122418266 G A PARP14 Missense_Mutation p.D289N 0.33 tolerated(0.52) benign(0.003) TCGA-BR-8680-01 3 122564623 122564623 T G DIRC2 Missense_Mutation p.L283V 0.26 tolerated(0.12) benign(0.439) TCGA-BR-8680-01 3 122630371 122630371 C T SEMA5B Missense_Mutation p.A1074T 0.28 tolerated(0.08) possibly_damaging(0.516) TCGA-BR-8680-01 3 122632771 122632771 C T SEMA5B Missense_Mutation p.R743Q 0.38 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 3 123003434 123003434 G T ADCY5 3'UTR 0.37 TCGA-BR-8680-01 3 123219414 123219414 G T PTPLB Missense_Mutation p.F210L 0.31 tolerated(0.11) possibly_damaging(0.754) TCGA-BR-8680-01 3 123385191 123385191 T G MYLK Missense_Mutation p.M1236L 0.35 tolerated(0.74) benign(0.004) TCGA-BR-8680-01 3 123419348 123419348 C A MYLK Missense_Mutation p.K989N 0.32 deleterious(0.02) benign(0.044) TCGA-BR-8680-01 3 123427629 123427629 A G MYLK Missense_Mutation p.F686L 0.32 tolerated(0.06) benign(0.005) TCGA-BR-8680-01 3 124420922 124420922 A C KALRN Missense_Mutation p.E981D 0.33 tolerated(1) benign(0.002) TCGA-BR-8680-01 3 124462839 124462839 C T UMPS Missense_Mutation p.R451C 0.27 deleterious(0.01) probably_damaging(1) TCGA-BR-8680-01 3 124739858 124739858 G A HEG1 Nonsense_Mutation p.R344* 0.29 TCGA-BR-8680-01 3 12613843 12613843 G A MKRN2 Missense_Mutation p.D205N 0.42 tolerated(0.11) benign(0.028) TCGA-BR-8680-01 3 126189737 126189737 C T ZXDC Splice_Site p.X424_splice 0.32 TCGA-BR-8680-01 3 126751319 126751319 C T PLXNA1 Missense_Mutation p.S1774L 0.33 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 3 127500727 127500727 A T MGLL Missense_Mutation p.F56Y 0.36 deleterious(0.03) benign(0.243) TCGA-BR-8680-01 3 127823693 127823693 G A RUVBL1 Missense_Mutation p.P146S 0.38 tolerated(0.08) benign(0.038) TCGA-BR-8680-01 3 128339383 128339383 C T RPN1 Silent p.S565S 0.26 TCGA-BR-8680-01 3 128525422 128525422 G A RAB7A Missense_Mutation p.E130K 0.37 tolerated(0.06) benign(0.021) TCGA-BR-8680-01 3 12858123 12858123 G A CAND2 Silent p.E564E 0.43 TCGA-BR-8680-01 3 12858461 12858461 A G CAND2 Missense_Mutation p.D677G 0.34 deleterious(0.03) benign(0.002) TCGA-BR-8680-01 3 12858543 12858543 C T CAND2 Silent p.N704N 0.24 TCGA-BR-8680-01 3 128706483 128706483 C T KIAA1257 Missense_Mutation p.D215N 0.34 deleterious(0.02) benign(0.098) TCGA-BR-8680-01 3 129009603 129009603 A G HMCES Missense_Mutation p.R137G 0.32 deleterious(0) benign(0.155) TCGA-BR-8680-01 3 129137112 129137112 G A EFCAB12 Silent p.I222I 0.39 TCGA-BR-8680-01 3 129155520 129155520 A C MBD4 Missense_Mutation p.F323V 0.39 tolerated(0.16) benign(0.006) TCGA-BR-8680-01 3 129247781 129247781 C T RHO Missense_Mutation p.R69C 0.38 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 3 129277299 129277299 C A PLXND1 Missense_Mutation p.C1806F 0.35 deleterious(0) possibly_damaging(0.506) TCGA-BR-8680-01 3 129277343 129277343 G A PLXND1 Silent p.I1791I 0.30 TCGA-BR-8680-01 3 129302495 129302495 G A PLXND1 Missense_Mutation p.S719L 0.45 tolerated(0.09) probably_damaging(0.916) TCGA-BR-8680-01 3 12940848 12940848 G A IQSEC1 3'UTR 0.52 TCGA-BR-8680-01 3 12955032 12955032 G A IQSEC1 Missense_Mutation p.R752W 0.31 deleterious(0) probably_damaging(0.979) TCGA-BR-8680-01 3 130095473 130095473 C T COL6A5 Missense_Mutation p.S154L 0.24 deleterious(0) benign(0.368) TCGA-BR-8680-01 3 130095664 130095664 G A COL6A5 Missense_Mutation p.D218N 0.21 tolerated(0.29) benign(0.028) TCGA-BR-8680-01 3 130159198 130159198 G T COL6A5 Missense_Mutation p.D2006Y 0.35 deleterious(0) probably_damaging(0.993) TCGA-BR-8680-01 3 130284283 130284283 C T COL6A6 Silent p.G369G 0.31 TCGA-BR-8680-01 3 130290173 130290173 T G COL6A6 Silent p.T971T 0.45 TCGA-BR-8680-01 3 130305384 130305384 A G COL6A6 Silent p.G1335G 0.29 TCGA-BR-8680-01 3 130361855 130361855 C T COL6A6 Nonsense_Mutation p.R1739* 0.35 TCGA-BR-8680-01 3 130368016 130368016 T G COL6A6 Silent p.A1781A 0.29 TCGA-BR-8680-01 3 130442276 130442276 C T PIK3R4 Missense_Mutation p.E655K 0.29 deleterious(0.01) probably_damaging(0.961) TCGA-BR-8680-01 3 130463973 130463973 T G PIK3R4 Missense_Mutation p.K30N 0.36 tolerated(0.51) benign(0.011) TCGA-BR-8680-01 3 130735276 130735276 G T ATP2C1 3'UTR 0.26 TCGA-BR-8680-01 3 130743446 130743446 G T ASTE1 Missense_Mutation p.F235L 0.29 tolerated(0.17) possibly_damaging(0.447) TCGA-BR-8680-01 3 131082221 131082221 C T NUDT16P1 RNA 0.21 TCGA-BR-8680-01 3 132172174 132172174 T C DNAJC13 Silent p.I190I 0.29 TCGA-BR-8680-01 3 132241676 132241676 G A DNAJC13 Missense_Mutation p.R1893Q 0.33 tolerated(0.11) benign(0.109) TCGA-BR-8680-01 3 132320115 132320115 G A ACKR4 Missense_Mutation p.A292T 0.19 deleterious(0) probably_damaging(0.996) TCGA-BR-8680-01 3 132401613 132401613 T C NPHP3 Missense_Mutation p.Y1249C 0.34 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 3 132403524 132403524 C T NPHP3 Silent p.K1148K 0.38 TCGA-BR-8680-01 3 132415633 132415633 G A NPHP3 Missense_Mutation p.R705C 0.34 deleterious(0.02) benign(0.022) TCGA-BR-8680-01 3 132437924 132437924 C A NPHP3 Missense_Mutation p.S195I 0.31 deleterious(0.01) benign(0.235) TCGA-BR-8680-01 3 133185754 133185754 C T BFSP2 Missense_Mutation p.S325L 0.35 deleterious(0.04) possibly_damaging(0.523) TCGA-BR-8680-01 3 133647754 133647754 C T C3orf36 5'UTR 0.38 TCGA-BR-8680-01 3 13372091 13372091 C T NUP210 Missense_Mutation p.E1327K 0.35 tolerated(0.1) benign(0.028) TCGA-BR-8680-01 3 13417924 13417924 C T NUP210 Missense_Mutation p.R387Q 0.36 deleterious(0) possibly_damaging(0.709) TCGA-BR-8680-01 3 134327586 134327586 G T KY Missense_Mutation p.S332Y 0.40 deleterious(0) probably_damaging(0.981) TCGA-BR-8680-01 3 135863921 135863921 C A PPP2R3A Silent p.P1122P 0.31 TCGA-BR-8680-01 3 135871511 135871511 T G MSL2 Missense_Mutation p.K71T 0.37 deleterious(0.01) benign(0.239) TCGA-BR-8680-01 3 135974701 135974701 A G PCCB Missense_Mutation p.K63E 0.25 deleterious_low_confidence(0) probably_damaging(0.967) TCGA-BR-8680-01 3 136046553 136046553 G T PCCB Missense_Mutation p.E479D 0.38 deleterious_low_confidence(0) probably_damaging(0.964) TCGA-BR-8680-01 3 136240172 136240172 G A STAG1 Nonsense_Mutation p.R187* 0.30 TCGA-BR-8680-01 3 13655629 13655629 G A FBLN2 Missense_Mutation p.R565H 0.35 deleterious(0.02) benign(0.063) TCGA-BR-8680-01 3 136646968 136646968 G A NCK1 Missense_Mutation p.R42Q 0.42 tolerated(0.34) probably_damaging(0.999) TCGA-BR-8680-01 3 137781510 137781510 C A DZIP1L 3'UTR 0.29 TCGA-BR-8680-01 3 137811252 137811252 G A DZIP1L Silent p.V281V 0.36 TCGA-BR-8680-01 3 138183346 138183346 G A ESYT3 Missense_Mutation p.E359K 0.36 deleterious(0) probably_damaging(0.998) TCGA-BR-8680-01 3 138218919 138218919 G T CEP70 Intron 0.30 TCGA-BR-8680-01 3 138453486 138453486 C T PIK3CB Missense_Mutation p.R321Q 0.36 tolerated(0.6) benign(0.003) TCGA-BR-8680-01 3 139085471 139085471 T G COPB2 Missense_Mutation p.K608T 0.27 tolerated(0.16) benign(0.034) TCGA-BR-8680-01 3 140397213 140397213 C T TRIM42 Missense_Mutation p.R48W 0.36 deleterious(0) possibly_damaging(0.614) TCGA-BR-8680-01 3 140675425 140675425 G A SLC25A36 Missense_Mutation p.R33Q 0.28 deleterious(0.01) benign(0.331) TCGA-BR-8680-01 3 140675523 140675523 C A SLC25A36 Missense_Mutation p.H66N 0.30 tolerated(0.15) benign(0.005) TCGA-BR-8680-01 3 141682680 141682680 G T TFDP2 Silent p.V286V 0.34 TCGA-BR-8680-01 3 14176277 14176277 C T TMEM43 Silent p.I197I 0.27 TCGA-BR-8680-01 3 142186856 142186856 G T ATR Missense_Mutation p.H2203N 0.28 tolerated(0.51) benign(0) TCGA-BR-8680-01 3 14223069 14223069 A G LSM3 Missense_Mutation p.T11A 0.25 tolerated(0.42) benign(0.001) TCGA-BR-8680-01 3 142231276 142231276 C T ATR Missense_Mutation p.D1560N 0.32 tolerated(0.06) possibly_damaging(0.808) TCGA-BR-8680-01 3 142281952 142281952 C A ATR Splice_Site p.X98_splice 0.33 TCGA-BR-8680-01 3 1425079 1425079 T G CNTN6 Missense_Mutation p.V835G 0.55 deleterious(0.02) probably_damaging(0.997) TCGA-BR-8680-01 3 142525010 142525010 G A TRPC1 Missense_Mutation p.R772Q 0.35 deleterious(0) probably_damaging(0.963) TCGA-BR-8680-01 3 142775251 142775251 C T U2SURP Missense_Mutation p.P1017S 0.29 deleterious(0.02) unknown(0) TCGA-BR-8680-01 3 143271229 143271229 G A SLC9A9 Missense_Mutation p.S355L 0.34 tolerated(0.31) benign(0.002) TCGA-BR-8680-01 3 143550871 143550871 A G SLC9A9 Missense_Mutation p.I123T 0.42 deleterious(0.04) benign(0.292) TCGA-BR-8680-01 3 143708552 143708552 G T C3orf58 Nonsense_Mutation p.E388* 0.38 TCGA-BR-8680-01 3 1445149 1445149 C A CNTN6 3'UTR 0.62 TCGA-BR-8680-01 3 14535218 14535218 G T SLC6A6 3'Flank 0.41 TCGA-BR-8680-01 3 145917772 145917772 T G PLSCR4 Missense_Mutation p.Q151P 0.25 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 3 148460039 148460039 G A AGTR1 3'UTR 0.32 TCGA-BR-8680-01 3 148577840 148577840 C A CPB1 3'UTR 0.33 TCGA-BR-8680-01 3 148714244 148714244 T G GYG1 Missense_Mutation p.F100C 0.34 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 3 148789221 148789221 T G HLTF Missense_Mutation p.T238P 0.38 deleterious(0) probably_damaging(0.944) TCGA-BR-8680-01 3 148868424 148868424 C T HPS3 Missense_Mutation p.A401V 0.32 tolerated(0.39) benign(0.324) TCGA-BR-8680-01 3 148927157 148927157 C A CP Nonsense_Mutation p.E208* 0.37 TCGA-BR-8680-01 3 148928079 148928079 G A CP Missense_Mutation p.A161V 0.29 tolerated(1) benign(0.003) TCGA-BR-8680-01 3 149238736 149238736 T C WWTR1 Silent p.Q353Q 0.30 TCGA-BR-8680-01 3 150176284 150176284 C A TSC22D2 Missense_Mutation p.S735Y 0.29 deleterious(0) possibly_damaging(0.86) TCGA-BR-8680-01 3 150460058 150460058 G A SIAH2 Missense_Mutation p.S282L 0.39 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 3 150659437 150659437 T G CLRN1 Missense_Mutation p.N122T 0.35 deleterious(0) possibly_damaging(0.89) TCGA-BR-8680-01 3 150931482 150931482 G A P2RY14 Missense_Mutation p.A208V 0.29 tolerated(1) possibly_damaging(0.907) TCGA-BR-8680-01 3 151045676 151045676 T C P2RY13 3'UTR 0.37 TCGA-BR-8680-01 3 151045839 151045839 C T P2RY13 Silent p.K335K 0.30 TCGA-BR-8680-01 3 151127057 151127057 C A MED12L Silent p.L1914L 0.37 TCGA-BR-8680-01 3 151162770 151162770 A C IGSF10 Missense_Mutation p.F1667V 0.31 deleterious(0) probably_damaging(0.938) TCGA-BR-8680-01 3 151166641 151166641 T G IGSF10 Missense_Mutation p.Q376H 0.37 tolerated(0.06) benign(0.034) TCGA-BR-8680-01 3 151542473 151542473 C A AADAC Missense_Mutation p.H152N 0.34 deleterious(0.02) probably_damaging(0.986) TCGA-BR-8680-01 3 152058590 152058590 G A TMEM14E Missense_Mutation p.S35F 0.37 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-BR-8680-01 3 15292791 15292791 T G CAPN7 3'UTR 0.37 TCGA-BR-8680-01 3 154002448 154002448 T G DHX36 Missense_Mutation p.K739T 0.35 deleterious(0.01) probably_damaging(0.958) TCGA-BR-8680-01 3 154002693 154002693 C A DHX36 Missense_Mutation p.M705I 0.40 deleterious(0.01) possibly_damaging(0.718) TCGA-BR-8680-01 3 154042185 154042185 C A DHX36 Missense_Mutation p.Q7H 0.28 deleterious_low_confidence(0.02) benign(0.216) TCGA-BR-8680-01 3 15457386 15457386 G A METTL6 Missense_Mutation p.L142F 0.32 deleterious(0.04) benign(0.302) TCGA-BR-8680-01 3 15492986 15492986 C A COLQ 3'UTR 0.33 TCGA-BR-8680-01 3 155282900 155282900 C T PLCH1 Silent p.T279T 0.37 TCGA-BR-8680-01 3 155311814 155311814 C T PLCH1 Missense_Mutation p.R117H 0.27 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 3 15686453 15686453 A T BTD Missense_Mutation p.I364F 0.34 tolerated(0.65) benign(0.004) TCGA-BR-8680-01 3 15686848 15686848 C T BTD Silent p.I495I 0.08 TCGA-BR-8680-01 3 156983335 156983335 G T VEPH1 Missense_Mutation p.L749M 0.25 deleterious(0.02) probably_damaging(0.992) TCGA-BR-8680-01 3 157081321 157081321 C A VEPH1 Nonsense_Mutation p.E523* 0.10 TCGA-BR-8680-01 3 157154792 157154792 G T PTX3 Missense_Mutation p.D24Y 0.32 deleterious(0) benign(0.352) TCGA-BR-8680-01 3 157188277 157188277 G T VEPH1 Silent p.I60I 0.38 TCGA-BR-8680-01 3 158262119 158262119 T G RSRC1 3'UTR 0.43 TCGA-BR-8680-01 3 158314734 158314734 C T MLF1 Silent p.F124F 0.23 TCGA-BR-8680-01 3 158525240 158525240 G T MFSD1 Missense_Mutation p.R192I 0.28 deleterious(0) probably_damaging(0.991) TCGA-BR-8680-01 3 159610062 159610062 G T IQCJ-SCHIP1 Intron 0.23 TCGA-BR-8680-01 3 160122287 160122287 T G SMC4 Missense_Mutation p.L228V 0.39 deleterious(0.01) probably_damaging(0.997) TCGA-BR-8680-01 3 16237352 16237352 C T GALNT15 Missense_Mutation p.R209W 0.32 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 3 16242239 16242239 G A GALNT15 Missense_Mutation p.A274T 0.43 deleterious(0.02) probably_damaging(1) TCGA-BR-8680-01 3 16475491 16475491 C T RFTN1 Missense_Mutation p.A67T 0.32 tolerated(0.14) benign(0.007) TCGA-BR-8680-01 3 164758812 164758812 C T SI Missense_Mutation p.R692H 0.30 deleterious(0) probably_damaging(0.965) TCGA-BR-8680-01 3 164758856 164758856 C T SI Silent p.Q677Q 0.29 TCGA-BR-8680-01 3 167086357 167086357 G A ZBBX Missense_Mutation p.A25V 0.34 tolerated(0.96) benign(0.023) TCGA-BR-8680-01 3 167090699 167090699 C A ZBBX 5'UTR 0.19 TCGA-BR-8680-01 3 167185069 167185069 T G SERPINI2 Missense_Mutation p.E84D 0.39 deleterious(0.04) possibly_damaging(0.876) TCGA-BR-8680-01 3 167246875 167246875 C T WDR49 Missense_Mutation p.D439N 0.20 deleterious(0.01) possibly_damaging(0.873) TCGA-BR-8680-01 3 167293770 167293770 C A WDR49 Missense_Mutation p.S141I 0.36 tolerated(0.06) possibly_damaging(0.653) TCGA-BR-8680-01 3 167750634 167750634 G A GOLIM4 Nonsense_Mutation p.R284* 0.34 TCGA-BR-8680-01 3 168802737 168802737 G A MECOM Missense_Mutation p.A1104V 0.30 deleterious(0.02) unknown(0) TCGA-BR-8680-01 3 169485577 169485577 A G ACTRT3 Silent p.C254C 0.33 TCGA-BR-8680-01 3 169496751 169496751 G T MYNN Missense_Mutation p.E154D 0.19 tolerated(0.27) benign(0.009) TCGA-BR-8680-01 3 169513321 169513321 G T LRRC34 Missense_Mutation p.F381L 0.29 tolerated(1) benign(0.002) TCGA-BR-8680-01 3 169525227 169525227 G A LRRC34 Missense_Mutation p.A144V 0.41 tolerated(0.07) benign(0.033) TCGA-BR-8680-01 3 169525456 169525456 C T LRRC34 Missense_Mutation p.R100H 0.37 tolerated(0.49) benign(0.028) TCGA-BR-8680-01 3 169539922 169539922 G T LRRIQ4 Missense_Mutation p.K71N 0.29 deleterious(0.01) possibly_damaging(0.875) TCGA-BR-8680-01 3 169557710 169557710 C T LRRC31 3'UTR 0.32 TCGA-BR-8680-01 3 169801785 169801785 T C GPR160 Missense_Mutation p.C9R 0.24 deleterious(0.03) probably_damaging(0.999) TCGA-BR-8680-01 3 170584266 170584266 C T RPL22L1 Missense_Mutation p.R91H 0.50 tolerated(0.11) benign(0.035) TCGA-BR-8680-01 3 170797352 170797352 A G TNIK Missense_Mutation p.W1135R 0.14 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 3 170805225 170805225 T C TNIK Missense_Mutation p.D931G 0.27 deleterious(0.03) probably_damaging(0.993) TCGA-BR-8680-01 3 171087468 171087468 C T TNIK Missense_Mutation p.A22T 0.44 deleterious(0) unknown(0) TCGA-BR-8680-01 3 171427395 171427395 C T PLD1 Missense_Mutation p.R339Q 0.25 tolerated(0.08) probably_damaging(0.997) TCGA-BR-8680-01 3 171453312 171453312 G A PLD1 Missense_Mutation p.A135V 0.25 tolerated(0.23) probably_damaging(0.999) TCGA-BR-8680-01 3 172491704 172491704 A C ECT2 Silent p.V480V 0.25 TCGA-BR-8680-01 3 172520655 172520655 A C ECT2 Missense_Mutation p.N664T 0.21 tolerated(0.25) probably_damaging(0.996) TCGA-BR-8680-01 3 173996827 173996827 G T NLGN1 Missense_Mutation p.D346Y 0.33 tolerated(0.07) probably_damaging(0.995) TCGA-BR-8680-01 3 176769307 176769307 C T TBL1XR1 Missense_Mutation p.A138T 0.25 tolerated(0.53) benign(0.001) TCGA-BR-8680-01 3 178921553 178921553 T A PIK3CA Missense_Mutation p.N345K 0.27 deleterious(0.01) probably_damaging(1) TCGA-BR-8680-01 3 178960766 178960766 C A KCNMB3 Missense_Mutation p.V256L 0.29 tolerated_low_confidence(0.14) benign(0.001) TCGA-BR-8680-01 3 178969024 178969024 A C KCNMB3 5'UTR 0.40 TCGA-BR-8680-01 3 179047499 179047499 A C ZNF639 Missense_Mutation p.K51T 0.07 deleterious_low_confidence(0.01) benign(0.193) TCGA-BR-8680-01 3 179051273 179051273 A C ZNF639 Missense_Mutation p.K174T 0.41 tolerated(0.07) possibly_damaging(0.69) TCGA-BR-8680-01 3 179066690 179066690 G A MFN1 Silent p.A17A 0.33 TCGA-BR-8680-01 3 179082099 179082099 T G MFN1 Missense_Mutation p.V184G 0.29 deleterious(0) probably_damaging(0.952) TCGA-BR-8680-01 3 179096507 179096507 C T MFN1 Missense_Mutation p.P523S 0.41 deleterious(0.01) benign(0) TCGA-BR-8680-01 3 179132743 179132743 G A GNB4 Silent p.I120I 0.34 TCGA-BR-8680-01 3 179306577 179306577 C A MRPL47 3'UTR 0.47 TCGA-BR-8680-01 3 179306726 179306726 C A MRPL47 Missense_Mutation p.K229N 0.42 tolerated(0.19) benign(0.421) TCGA-BR-8680-01 3 179341795 179341795 T G NDUFB5 Missense_Mutation p.I179M 0.32 deleterious(0.04) possibly_damaging(0.878) TCGA-BR-8680-01 3 180366038 180366038 G A CCDC39 Missense_Mutation p.T426I 0.43 tolerated(0.06) possibly_damaging(0.458) TCGA-BR-8680-01 3 182554406 182554406 G A ATP11B Intron 0.24 TCGA-BR-8680-01 3 182635851 182635851 A G ATP11B Missense_Mutation p.S1165G 0.35 deleterious_low_confidence(0) probably_damaging(0.952) TCGA-BR-8680-01 3 182679035 182679035 T C DCUN1D1 Missense_Mutation p.N167D 0.35 tolerated(0.21) benign(0.002) TCGA-BR-8680-01 3 182681709 182681709 A G DCUN1D1 Missense_Mutation p.F117L 0.27 deleterious(0) benign(0.369) TCGA-BR-8680-01 3 182946141 182946141 C A MCF2L2 Nonsense_Mutation p.E687* 0.35 TCGA-BR-8680-01 3 182988416 182988416 C A B3GNT5 Nonsense_Mutation p.S277* 0.31 TCGA-BR-8680-01 3 183273245 183273245 C T KLHL6 Missense_Mutation p.R66Q 0.36 deleterious(0.03) probably_damaging(0.934) TCGA-BR-8680-01 3 183528314 183528314 T C YEATS2 Silent p.I1404I 0.28 TCGA-BR-8680-01 3 183818112 183818112 A C HTR3E 5'Flank 0.40 TCGA-BR-8680-01 3 183854515 183854515 A C EIF2B5 Missense_Mutation p.E104A 0.29 tolerated(0.41) benign(0.006) TCGA-BR-8680-01 3 183856022 183856022 C A EIF2B5 Silent p.I251I 0.36 TCGA-BR-8680-01 3 183884050 183884050 A G DVL3 Silent p.L300L 0.31 TCGA-BR-8680-01 3 183976237 183976237 C T ECE2 Intron 0.32 TCGA-BR-8680-01 3 184041688 184041688 G T EIF4G1 Missense_Mutation p.D806Y 0.35 deleterious(0) probably_damaging(0.934) TCGA-BR-8680-01 3 184090679 184090679 C A THPO Missense_Mutation p.K228N 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.764) TCGA-BR-8680-01 3 184102385 184102385 C T CHRD Missense_Mutation p.L501F 0.44 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 3 18427971 18427971 C T SATB1 Missense_Mutation p.E447K 0.27 deleterious(0.02) benign(0.316) TCGA-BR-8680-01 3 184298943 184298943 G A EPHB3 Missense_Mutation p.A908T 0.36 tolerated(0.6) benign(0) TCGA-BR-8680-01 3 184953175 184953175 C A EHHADH Missense_Mutation p.R85I 0.46 tolerated(0.09) benign(0.11) TCGA-BR-8680-01 3 185161334 185161334 G A MAP3K13 Missense_Mutation p.R254Q 0.34 tolerated(0.29) benign(0.108) TCGA-BR-8680-01 3 185270302 185270302 T G LIPH 5'UTR 0.37 TCGA-BR-8680-01 3 185416116 185416116 G A IGF2BP2 Nonsense_Mutation p.R87* 0.21 TCGA-BR-8680-01 3 185797681 185797681 G A ETV5 Missense_Mutation p.A192V 0.34 tolerated(0.19) benign(0.02) TCGA-BR-8680-01 3 186257252 186257252 C T CRYGS Silent p.R52R 0.38 TCGA-BR-8680-01 3 186395680 186395680 T G HRG 3'UTR 0.13 TCGA-BR-8680-01 3 186395702 186395702 T C HRG 3'UTR 0.49 TCGA-BR-8680-01 3 186445091 186445091 T G KNG1 Missense_Mutation p.N210K 0.33 tolerated(0.34) benign(0.034) TCGA-BR-8680-01 3 186459654 186459654 T C KNG1 Missense_Mutation p.V490A 0.38 deleterious(0.01) benign(0) TCGA-BR-8680-01 3 186793759 186793759 T G ST6GAL1 3'UTR 0.55 TCGA-BR-8680-01 3 186953405 186953405 G T MASP1 3'UTR 0.36 TCGA-BR-8680-01 3 186954160 186954160 C T MASP1 Missense_Mutation p.R500H 0.39 tolerated(0.84) benign(0.001) TCGA-BR-8680-01 3 187009558 187009558 A G MASP1 5'UTR 0.48 TCGA-BR-8680-01 3 187088673 187088673 C T RTP4 Missense_Mutation p.R85C 0.15 deleterious(0.02) possibly_damaging(0.691) TCGA-BR-8680-01 3 187088944 187088944 A C RTP4 Missense_Mutation p.K175T 0.15 tolerated(0.61) benign(0.006) TCGA-BR-8680-01 3 187416459 187416459 C T RTP2 Missense_Mutation p.E169K 0.32 tolerated(0.26) benign(0.102) TCGA-BR-8680-01 3 189349237 189349237 A G TP63 5'UTR 0.34 TCGA-BR-8680-01 3 189526302 189526302 C T TP63 Missense_Mutation p.S189L 0.45 deleterious(0) probably_damaging(0.997) TCGA-BR-8680-01 3 189691761 189691761 T C LEPREL1 Silent p.G495G 0.11 TCGA-BR-8680-01 3 189700850 189700850 G A LEPREL1 Nonsense_Mutation p.R437* 0.33 TCGA-BR-8680-01 3 189702354 189702354 C T LEPREL1 Missense_Mutation p.R405Q 0.24 deleterious(0.02) possibly_damaging(0.806) TCGA-BR-8680-01 3 189838069 189838069 T G LEPREL1 Missense_Mutation p.Y151S 0.38 deleterious(0) probably_damaging(0.973) TCGA-BR-8680-01 3 190326850 190326850 T C IL1RAP Silent p.N139N 0.30 TCGA-BR-8680-01 3 190993102 190993102 C T UTS2B Silent p.E91E 0.35 TCGA-BR-8680-01 3 192517304 192517304 A G MB21D2 Missense_Mutation p.M116T 0.28 tolerated(0.33) benign(0.105) TCGA-BR-8680-01 3 193176841 193176841 C A ATP13A4 Intron 0.30 TCGA-BR-8680-01 3 193182749 193182749 T G ATP13A4 Missense_Mutation p.N481H 0.32 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 3 193232644 193232644 C A ATP13A4 Missense_Mutation p.R26L 0.27 deleterious(0) possibly_damaging(0.637) TCGA-BR-8680-01 3 194140694 194140694 A C ATP13A3 Missense_Mutation p.F1106V 0.46 tolerated(0.6) benign(0.001) TCGA-BR-8680-01 3 194169269 194169269 C T ATP13A3 Missense_Mutation p.R356Q 0.35 deleterious(0.03) possibly_damaging(0.826) TCGA-BR-8680-01 3 194349195 194349195 A C TMEM44 Missense_Mutation p.S61A 0.30 tolerated(0.06) possibly_damaging(0.558) TCGA-BR-8680-01 3 195452790 195452790 C T MUC20 Missense_Mutation p.A439V 0.18 tolerated(0.17) possibly_damaging(0.682) TCGA-BR-8680-01 3 195538749 195538749 T C MUC4 5'UTR 0.55 TCGA-BR-8680-01 3 195613863 195613863 C A TNK2 Missense_Mutation p.K136N 0.25 deleterious(0.01) benign(0.253) TCGA-BR-8680-01 3 195787075 195787075 C T TFRC Silent p.T504T 0.34 TCGA-BR-8680-01 3 195955063 195955063 C T SLC51A Missense_Mutation p.T147M 0.30 tolerated(0.22) benign(0.218) TCGA-BR-8680-01 3 196214416 196214416 C A RNF168 Nonsense_Mutation p.E138* 0.34 TCGA-BR-8680-01 3 196287914 196287914 G A WDR53 Missense_Mutation p.R145W 0.24 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 3 196288018 196288018 G A WDR53 Missense_Mutation p.A110V 0.24 deleterious(0) probably_damaging(0.985) TCGA-BR-8680-01 3 196311019 196311019 C T FBXO45 Nonsense_Mutation p.R231* 0.35 TCGA-BR-8680-01 3 196457961 196457961 T G PIGX Missense_Mutation p.S229A 0.30 tolerated(0.57) benign(0.03) TCGA-BR-8680-01 3 196812540 196812540 A C DLG1 Missense_Mutation p.I616M 0.31 tolerated(0.08) benign(0.034) TCGA-BR-8680-01 3 196888575 196888575 A G DLG1 Missense_Mutation p.V173A 0.35 tolerated(0.34) benign(0.003) TCGA-BR-8680-01 3 19924060 19924060 C A EFHB Missense_Mutation p.K770N 0.22 deleterious(0.04) possibly_damaging(0.459) TCGA-BR-8680-01 3 24003483 24003483 G A NR1D2 Missense_Mutation p.R178H 0.35 deleterious(0) probably_damaging(0.996) TCGA-BR-8680-01 3 24169075 24169075 G T THRB Silent p.I353I 0.13 TCGA-BR-8680-01 3 24188225 24188225 C T THRB Missense_Mutation p.R158Q 0.40 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 3 25542770 25542770 A C RARB Missense_Mutation p.Y135S 0.34 tolerated(0.07) probably_damaging(0.961) TCGA-BR-8680-01 3 25639777 25639777 A T TOP2B 3'UTR 0.38 TCGA-BR-8680-01 3 26751587 26751587 A C LRRC3B Missense_Mutation p.I142L 0.24 tolerated(1) benign(0) TCGA-BR-8680-01 3 27439829 27439829 G A SLC4A7 Missense_Mutation p.R806C 0.37 deleterious(0.01) possibly_damaging(0.601) TCGA-BR-8680-01 3 27446338 27446338 A C SLC4A7 Missense_Mutation p.I677M 0.33 deleterious(0) probably_damaging(0.932) TCGA-BR-8680-01 3 27465554 27465554 C A SLC4A7 Nonsense_Mutation p.E405* 0.37 TCGA-BR-8680-01 3 27758428 27758428 G A EOMES 3'UTR 0.57 TCGA-BR-8680-01 3 28454570 28454570 A C ZCWPW2 Missense_Mutation p.E4A 0.30 tolerated_low_confidence(0.1) benign(0.039) TCGA-BR-8680-01 3 28562602 28562602 G A ZCWPW2 Missense_Mutation p.E302K 0.37 tolerated(0.12) benign(0.002) TCGA-BR-8680-01 3 29529985 29529985 G A RBMS3 Missense_Mutation p.C101Y 0.42 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 3 29628640 29628640 G A RBMS3 Missense_Mutation p.A115T 0.22 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 3 30842400 30842400 G A GADL1 Missense_Mutation p.R411C 0.29 deleterious(0.02) probably_damaging(0.969) TCGA-BR-8680-01 3 3137010 3137010 T C IL5RA Missense_Mutation p.I276M 0.47 deleterious(0.01) probably_damaging(0.963) TCGA-BR-8680-01 3 31703382 31703382 A C OSBPL10 3'UTR 0.29 TCGA-BR-8680-01 3 32031257 32031257 C A ZNF860 Missense_Mutation p.S229Y 0.71 deleterious(0) probably_damaging(0.921) TCGA-BR-8680-01 3 32032333 32032333 C A ZNF860 Missense_Mutation p.H588N 0.17 deleterious(0) probably_damaging(0.986) TCGA-BR-8680-01 3 32568352 32568352 C T DYNC1LI1 Missense_Mutation p.R504Q 0.26 tolerated(0.07) probably_damaging(0.999) TCGA-BR-8680-01 3 32932065 32932065 G A TRIM71 Missense_Mutation p.D457N 0.29 deleterious(0.01) possibly_damaging(0.629) TCGA-BR-8680-01 3 33194681 33194681 A C SUSD5 Silent p.S481S 0.37 TCGA-BR-8680-01 3 35748466 35748466 A G ARPP21 Missense_Mutation p.I229M 0.31 deleterious(0.01) benign(0.389) TCGA-BR-8680-01 3 35748563 35748563 G T ARPP21 Nonsense_Mutation p.E262* 0.26 TCGA-BR-8680-01 3 35770832 35770832 G A ARPP21 Silent p.S387S 0.33 TCGA-BR-8680-01 3 36570207 36570207 C A STAC Missense_Mutation p.L314I 0.52 tolerated(0.09) possibly_damaging(0.658) TCGA-BR-8680-01 3 36779482 36779482 C A DCLK3 Missense_Mutation p.K223N 0.36 deleterious(0) possibly_damaging(0.449) TCGA-BR-8680-01 3 36780237 36780237 C A DCLK3 5'UTR 0.42 TCGA-BR-8680-01 3 36874329 36874329 C A TRANK1 Nonsense_Mutation p.E2205* 0.33 TCGA-BR-8680-01 3 36875232 36875232 G A TRANK1 Missense_Mutation p.R1904C 0.26 tolerated(0.18) benign(0.002) TCGA-BR-8680-01 3 37366074 37366074 G T GOLGA4 Missense_Mutation p.Q921H 0.10 benign(0.043) TCGA-BR-8680-01 3 38010893 38010893 C T CTDSPL Intron 0.45 TCGA-BR-8680-01 3 38039783 38039783 C T VILL Silent p.G290G 0.31 TCGA-BR-8680-01 3 38051969 38051969 C T PLCD1 Missense_Mutation p.R313H 0.08 tolerated(0.11) benign(0.078) TCGA-BR-8680-01 3 38164477 38164477 T C ACAA1 3'UTR 0.24 TCGA-BR-8680-01 3 38593041 38593041 G T SCN5A Missense_Mutation p.L1608I 0.32 deleterious(0.03) probably_damaging(0.997) TCGA-BR-8680-01 3 38628975 38628975 G A SCN5A Silent p.F784F 0.48 TCGA-BR-8680-01 3 38793713 38793713 G A SCN10A Silent p.V584V 0.28 TCGA-BR-8680-01 3 38961476 38961476 C A SCN11A Missense_Mutation p.K303N 0.31 tolerated(0.45) possibly_damaging(0.843) TCGA-BR-8680-01 3 39229433 39229433 C T XIRP1 Missense_Mutation p.E502K 0.32 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 3 39373970 39373970 C A CCR8 Missense_Mutation p.L50I 0.12 deleterious(0.01) probably_damaging(0.976) TCGA-BR-8680-01 3 40571778 40571778 A G ZNF621 Missense_Mutation p.D77G 0.06 tolerated(0.27) benign(0.034) TCGA-BR-8680-01 3 41266826 41266826 T G CTNNB1 Missense_Mutation p.V166G 0.31 deleterious(0) benign(0.338) TCGA-BR-8680-01 3 41277291 41277291 G A CTNNB1 Missense_Mutation p.R587Q 0.28 deleterious(0) probably_damaging(0.99) TCGA-BR-8680-01 3 41756778 41756778 C T ULK4 Missense_Mutation p.R862Q 0.28 deleterious(0) probably_damaging(0.975) TCGA-BR-8680-01 3 41957545 41957545 C A ULK4 Splice_Site p.X243_splice 0.30 TCGA-BR-8680-01 3 42305056 42305056 C T CCK Missense_Mutation p.V23M 0.28 tolerated(0.16) benign(0.081) TCGA-BR-8680-01 3 42680746 42680746 G A NKTR Missense_Mutation p.E1184K 0.33 deleterious_low_confidence(0.01) probably_damaging(0.959) TCGA-BR-8680-01 3 42684043 42684043 G A NKTR Missense_Mutation p.R1366Q 0.36 deleterious_low_confidence(0) unknown(0) TCGA-BR-8680-01 3 42705409 42705409 G A ZBTB47 Missense_Mutation p.D620N 0.22 tolerated(0.21) unknown(0) TCGA-BR-8680-01 3 42730438 42730438 G A KLHL40 Missense_Mutation p.R500H 0.23 deleterious(0) probably_damaging(0.995) TCGA-BR-8680-01 3 42916094 42916094 G A CYP8B1 Silent p.Y405Y 0.27 TCGA-BR-8680-01 3 42956704 42956704 G A ZNF662 Missense_Mutation p.R406K 0.33 deleterious(0.04) probably_damaging(0.963) TCGA-BR-8680-01 3 43121449 43121449 G A POMGNT2 Missense_Mutation p.A492V 0.32 tolerated(0.32) benign(0.154) TCGA-BR-8680-01 3 44490137 44490137 C T ZNF445 Silent p.A342A 0.32 TCGA-BR-8680-01 3 44490186 44490186 T C ZNF445 Missense_Mutation p.E326G 0.25 deleterious(0.03) benign(0.403) TCGA-BR-8680-01 3 44541327 44541327 G T ZNF852 Silent p.L314L 0.42 TCGA-BR-8680-01 3 44541481 44541481 C A ZNF852 Missense_Mutation p.R263I 0.29 deleterious(0) probably_damaging(0.946) TCGA-BR-8680-01 3 44544100 44544100 C T ZNF852 Missense_Mutation p.A26T 0.24 tolerated(0.29) benign(0.02) TCGA-BR-8680-01 3 44612641 44612641 T C ZKSCAN7 Missense_Mutation p.V680A 0.31 tolerated(0.06) probably_damaging(0.97) TCGA-BR-8680-01 3 44612818 44612818 G A ZKSCAN7 Missense_Mutation p.R739Q 0.29 deleterious(0.02) possibly_damaging(0.879) TCGA-BR-8680-01 3 44635617 44635617 A C ZNF660 5'UTR 0.33 TCGA-BR-8680-01 3 44700935 44700935 G A ZNF35 Silent p.K360K 0.30 TCGA-BR-8680-01 3 44700985 44700985 T G ZNF35 Missense_Mutation p.L377R 0.38 deleterious(0.01) probably_damaging(1) TCGA-BR-8680-01 3 44701252 44701252 G T ZNF35 Missense_Mutation p.R466I 0.29 deleterious(0.02) probably_damaging(1) TCGA-BR-8680-01 3 44763241 44763241 C T ZNF502 Missense_Mutation p.T311M 0.38 tolerated(0.11) benign(0.066) TCGA-BR-8680-01 3 44816777 44816777 C T KIF15 Nonsense_Mutation p.R32* 0.24 TCGA-BR-8680-01 3 44816783 44816783 C T KIF15 Missense_Mutation p.R34C 0.25 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 3 45038655 45038655 C T EXOSC7 Missense_Mutation p.R111W 0.30 deleterious(0) possibly_damaging(0.881) TCGA-BR-8680-01 3 45052889 45052889 C T EXOSC7 3'UTR 0.50 TCGA-BR-8680-01 3 45943167 45943167 A C CCR9 Missense_Mutation p.D296A 0.34 deleterious(0) possibly_damaging(0.714) TCGA-BR-8680-01 3 45988319 45988319 T C CXCR6 Missense_Mutation p.S116P 0.25 deleterious(0.04) probably_damaging(0.998) TCGA-BR-8680-01 3 46754462 46754462 G A PRSS50 Missense_Mutation p.P284S 0.26 tolerated(0.12) possibly_damaging(0.841) TCGA-BR-8680-01 3 47125869 47125869 T C SETD2 Missense_Mutation p.I1801V 0.23 deleterious(0.02) benign(0.1) TCGA-BR-8680-01 3 47164507 47164507 C T SETD2 Missense_Mutation p.R540Q 0.34 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-BR-8680-01 3 47278109 47278109 C T KIF9 Missense_Mutation p.G642D 0.43 deleterious(0.02) possibly_damaging(0.634) TCGA-BR-8680-01 3 47651782 47651782 G A SMARCC1 Silent p.R939R 0.35 TCGA-BR-8680-01 3 47730897 47730897 T C SMARCC1 Missense_Mutation p.T415A 0.16 tolerated(0.33) benign(0.001) TCGA-BR-8680-01 3 47734780 47734780 C A SMARCC1 Missense_Mutation p.K392N 0.25 deleterious(0.02) benign(0.052) TCGA-BR-8680-01 3 47891144 47891144 A G DHX30 Silent p.R1072R 0.45 TCGA-BR-8680-01 3 47950746 47950746 C T MAP4 Intron 0.25 TCGA-BR-8680-01 3 47951028 47951028 T C MAP4 Intron 0.42 TCGA-BR-8680-01 3 48266793 48266793 G T CAMP Missense_Mutation p.R134I 0.33 tolerated(0.36) benign(0.156) TCGA-BR-8680-01 3 48348368 48348368 A G SPINK8 3'UTR 0.38 TCGA-BR-8680-01 3 48420978 48420978 T C FBXW12 Missense_Mutation p.V235A 0.34 tolerated(0.12) benign(0.027) TCGA-BR-8680-01 3 48465339 48465339 C T PLXNB1 Missense_Mutation p.A228T 0.19 deleterious(0.02) probably_damaging(0.98) TCGA-BR-8680-01 3 48626118 48626118 G A COL7A1 Silent p.V848V 0.34 TCGA-BR-8680-01 3 48694593 48694593 A C CELSR3 Missense_Mutation p.F1313V 0.33 deleterious(0.02) probably_damaging(0.998) TCGA-BR-8680-01 3 49006041 49006041 G T ARIH2 Nonsense_Mutation p.E205* 0.33 TCGA-BR-8680-01 3 49162014 49162014 C T LAMB2 Silent p.P1047P 0.37 TCGA-BR-8680-01 3 49321563 49321563 A G USP4 Silent p.C799C 0.24 TCGA-BR-8680-01 3 49321951 49321951 C A USP4 Missense_Mutation p.D780Y 0.40 deleterious(0) probably_damaging(0.942) TCGA-BR-8680-01 3 49548223 49548223 T G DAG1 Missense_Mutation p.L86V 0.39 tolerated(0.79) benign(0) TCGA-BR-8680-01 3 49690676 49690676 T G BSN Nonsense_Mutation p.Y1229* 0.31 TCGA-BR-8680-01 3 49693126 49693126 G A BSN Missense_Mutation p.R2046H 0.31 unknown(0) TCGA-BR-8680-01 3 49755971 49755971 C T AMIGO3 Missense_Mutation p.A310T 0.45 tolerated(0.94) benign(0.004) TCGA-BR-8680-01 3 49758896 49758896 C T RNF123 3'UTR 0.52 TCGA-BR-8680-01 3 49879261 49879261 C A TRAIP Missense_Mutation p.K205N 0.29 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 3 50102503 50102503 G A RBM6 Missense_Mutation p.D876N 0.30 deleterious(0) probably_damaging(0.99) TCGA-BR-8680-01 3 50254684 50254684 A G SLC38A3 RNA 0.14 TCGA-BR-8680-01 3 50597097 50597097 G T C3orf18 Silent p.I160I 0.44 TCGA-BR-8680-01 3 50608616 50608616 C T HEMK1 Silent p.S27S 0.40 TCGA-BR-8680-01 3 50655008 50655008 A C MAPKAPK3 Missense_Mutation p.E4D 0.33 deleterious_low_confidence(0.02) possibly_damaging(0.636) TCGA-BR-8680-01 3 50683628 50683628 G T MAPKAPK3 Missense_Mutation p.M254I 0.35 deleterious(0) benign(0.302) TCGA-BR-8680-01 3 51417640 51417640 T C DOCK3 Splice_Site p.X1861_splice 0.29 TCGA-BR-8680-01 3 51430882 51430882 C T RBM15B Silent p.S684S 0.36 TCGA-BR-8680-01 3 51497201 51497201 T G VPRBP Missense_Mutation p.N102H 0.35 deleterious(0) benign(0.155) TCGA-BR-8680-01 3 51743099 51743099 C T GRM2 Silent p.L34L 0.40 TCGA-BR-8680-01 3 51743227 51743227 G A GRM2 Silent p.P76P 0.40 TCGA-BR-8680-01 3 51897136 51897136 C T IQCF2 Missense_Mutation p.S82L 0.33 tolerated(0.2) benign(0.001) TCGA-BR-8680-01 3 52027960 52027960 T G RPL29 Silent p.R95R 0.33 TCGA-BR-8680-01 3 52381902 52381902 G T DNAH1 Missense_Mutation p.S673I 0.53 possibly_damaging(0.514) TCGA-BR-8680-01 3 5241340 5241340 G A EDEM1 Missense_Mutation p.D216N 0.49 tolerated(0.06) possibly_damaging(0.534) TCGA-BR-8680-01 3 52423500 52423500 C T DNAH1 Silent p.Y3173Y 0.50 TCGA-BR-8680-01 3 52433758 52433758 T G DNAH1 Missense_Mutation p.F4213L 0.41 benign(0.009) TCGA-BR-8680-01 3 52441282 52441282 C T BAP1 Missense_Mutation p.R163Q 0.33 tolerated(0.07) possibly_damaging(0.69) TCGA-BR-8680-01 3 52475391 52475391 C A SEMA3G Missense_Mutation p.E234D 0.38 tolerated(1) benign(0) TCGA-BR-8680-01 3 52505858 52505858 C A NISCH Silent p.V146V 0.37 TCGA-BR-8680-01 3 52543302 52543302 C T STAB1 Missense_Mutation p.S771L 0.20 deleterious(0) possibly_damaging(0.734) TCGA-BR-8680-01 3 52558592 52558592 T C NT5DC2 Missense_Mutation p.Y523C 0.32 deleterious(0.02) probably_damaging(0.983) TCGA-BR-8680-01 3 52824806 52824806 C T ITIH1 Missense_Mutation p.S788F 0.37 deleterious(0.01) probably_damaging(0.961) TCGA-BR-8680-01 3 52831835 52831835 C T ITIH3 Silent p.I184I 0.31 TCGA-BR-8680-01 3 52836763 52836763 C T ITIH3 Silent p.F550F 0.42 TCGA-BR-8680-01 3 52859950 52859950 G T ITIH4 Silent p.L237L 0.27 TCGA-BR-8680-01 3 52860836 52860836 G A ITIH4 Missense_Mutation p.R164W 0.37 deleterious(0) possibly_damaging(0.886) TCGA-BR-8680-01 3 52941623 52941623 T C SFMBT1 Missense_Mutation p.K678R 0.36 tolerated(0.11) probably_damaging(0.932) TCGA-BR-8680-01 3 53212512 53212512 A C PRKCD Missense_Mutation p.Q25P 0.27 tolerated(0.11) benign(0.001) TCGA-BR-8680-01 3 53752369 53752369 A C CACNA1D Missense_Mutation p.N478H 0.28 deleterious(0.03) possibly_damaging(0.857) TCGA-BR-8680-01 3 53845206 53845206 G A CACNA1D Missense_Mutation p.E2107K 0.28 deleterious_low_confidence(0.02) probably_damaging(0.992) TCGA-BR-8680-01 3 53914039 53914039 A C ACTR8 Missense_Mutation p.V74G 0.32 deleterious(0) possibly_damaging(0.729) TCGA-BR-8680-01 3 54157603 54157603 T C CACNA2D3 Silent p.G62G 0.41 TCGA-BR-8680-01 3 54952817 54952817 G A LRTM1 Missense_Mutation p.A236V 0.31 tolerated(0.08) benign(0.003) TCGA-BR-8680-01 3 56114904 56114904 G A ERC2 Missense_Mutation p.R528C 0.41 tolerated(0.07) possibly_damaging(0.892) TCGA-BR-8680-01 3 56655436 56655436 T G FAM208A 3'Flank 0.21 TCGA-BR-8680-01 3 56657215 56657215 C T FAM208A 3'UTR 0.21 TCGA-BR-8680-01 3 56661678 56661678 T G FAM208A Missense_Mutation p.E1321A 0.29 deleterious(0) possibly_damaging(0.875) TCGA-BR-8680-01 3 56674012 56674012 A G FAM208A Splice_Site p.X922_splice 0.38 TCGA-BR-8680-01 3 57232259 57232259 G A HESX1 Missense_Mutation p.A175V 0.25 tolerated(1) benign(0.001) TCGA-BR-8680-01 3 57269638 57269638 T G APPL1 Missense_Mutation p.I33M 0.36 deleterious(0.03) benign(0.035) TCGA-BR-8680-01 3 57283540 57283540 G A APPL1 Missense_Mutation p.R339Q 0.33 deleterious(0.02) benign(0.038) TCGA-BR-8680-01 3 57616162 57616162 C T DENND6A Missense_Mutation p.A536T 0.35 tolerated(0.07) probably_damaging(0.992) TCGA-BR-8680-01 3 57649398 57649398 G A DENND6A Nonsense_Mutation p.R160* 0.27 TCGA-BR-8680-01 3 57651870 57651870 C A DENND6A Missense_Mutation p.D138Y 0.23 deleterious(0.01) benign(0.312) TCGA-BR-8680-01 3 57875781 57875781 C T SLMAP Silent p.V404V 0.43 TCGA-BR-8680-01 3 58131773 58131773 G T FLNB Nonsense_Mutation p.E1882* 0.35 TCGA-BR-8680-01 3 58134405 58134405 G A FLNB Missense_Mutation p.E2004K 0.32 deleterious(0.03) possibly_damaging(0.492) TCGA-BR-8680-01 3 58135711 58135711 G A FLNB Missense_Mutation p.A2107T 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8680-01 3 58296086 58296086 A C RPP14 Missense_Mutation p.R10S 0.34 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 3 58417336 58417336 G A PDHB Missense_Mutation p.A96V 0.32 deleterious(0) probably_damaging(0.959) TCGA-BR-8680-01 3 58552241 58552241 G A FAM107A 3'UTR 0.36 TCGA-BR-8680-01 3 58870367 58870367 T C C3orf67 Missense_Mutation p.T82A 0.35 tolerated(0.06) benign(0.041) TCGA-BR-8680-01 3 62118333 62118333 G A PTPRG Missense_Mutation p.V225I 0.23 tolerated(0.08) possibly_damaging(0.683) TCGA-BR-8680-01 3 62319168 62319168 C T C3orf14 3'UTR 0.52 TCGA-BR-8680-01 3 62522188 62522188 C T CADPS Missense_Mutation p.A679T 0.32 tolerated(0.28) possibly_damaging(0.499) TCGA-BR-8680-01 3 62636621 62636621 C A CADPS Missense_Mutation p.Q368H 0.33 tolerated(0.14) benign(0.216) TCGA-BR-8680-01 3 64085446 64085446 G A PRICKLE2 Missense_Mutation p.R606C 0.25 deleterious(0) possibly_damaging(0.807) TCGA-BR-8680-01 3 64608121 64608121 C T ADAMTS9 Missense_Mutation p.R844H 0.24 deleterious(0) probably_damaging(0.953) TCGA-BR-8680-01 3 64617528 64617528 G T ADAMTS9 Missense_Mutation p.S750Y 0.33 deleterious(0) probably_damaging(0.985) TCGA-BR-8680-01 3 65344740 65344740 G A MAGI1 Intron 0.27 TCGA-BR-8680-01 3 66293694 66293694 G T SLC25A26 Missense_Mutation p.L86F 0.40 tolerated(0.21) benign(0.012) TCGA-BR-8680-01 3 66448589 66448589 C T LRIG1 Silent p.A417A 0.38 TCGA-BR-8680-01 3 67559310 67559310 C T SUCLG2 Silent p.T226T 0.21 TCGA-BR-8680-01 3 6903450 6903450 G A GRM7 Silent p.A125A 0.58 TCGA-BR-8680-01 3 69168243 69168243 C A LMOD3 Missense_Mutation p.E421D 0.25 deleterious(0.01) probably_damaging(0.929) TCGA-BR-8680-01 3 69168701 69168701 C A LMOD3 Nonsense_Mutation p.E269* 0.36 TCGA-BR-8680-01 3 72881596 72881596 C A SHQ1 Missense_Mutation p.D175Y 0.27 deleterious(0) probably_damaging(0.996) TCGA-BR-8680-01 3 74411169 74411169 C A CNTN3 Missense_Mutation p.K412N 0.24 tolerated(0.21) possibly_damaging(0.635) TCGA-BR-8680-01 3 7721736 7721736 C A GRM7 Missense_Mutation p.L818I 0.37 tolerated(0.42) benign(0.087) TCGA-BR-8680-01 3 77526693 77526693 C T ROBO2 Nonsense_Mutation p.R189* 0.27 TCGA-BR-8680-01 3 77684173 77684173 C T ROBO2 Nonsense_Mutation p.R1321* 0.34 TCGA-BR-8680-01 3 78649283 78649283 C A ROBO1 Missense_Mutation p.D1641Y 0.49 tolerated_low_confidence(0.14) unknown(0) TCGA-BR-8680-01 3 81698040 81698040 T C GBE1 Missense_Mutation p.T220A 0.27 tolerated(0.54) probably_damaging(0.999) TCGA-BR-8680-01 3 88041084 88041084 C T HTR1F 3'UTR 0.13 TCGA-BR-8680-01 3 89259419 89259419 C T EPHA3 Missense_Mutation p.A188V 0.34 deleterious(0.01) probably_damaging(0.994) TCGA-BR-8680-01 3 8983301 8983301 C A RAD18 Nonsense_Mutation p.E152* 0.34 TCGA-BR-8680-01 3 8990233 8990233 T G RAD18 Missense_Mutation p.K52T 0.36 deleterious(0.01) probably_damaging(0.995) TCGA-BR-8680-01 3 93734063 93734063 G T STX19 Silent p.L17L 0.31 TCGA-BR-8680-01 3 93780181 93780181 A G DHFRL1 Missense_Mutation p.F59L 0.29 tolerated(0.07) benign(0.363) TCGA-BR-8680-01 3 9482139 9482139 G T SETD5 Splice_Site p.X190_splice 0.39 TCGA-BR-8680-01 3 96706417 96706417 A C EPHA6 Missense_Mutation p.I232L 0.37 tolerated(0.33) benign(0.001) TCGA-BR-8680-01 3 97467501 97467501 C T EPHA6 Missense_Mutation p.R1117C 0.32 deleterious(0) probably_damaging(0.949) TCGA-BR-8680-01 3 97598582 97598582 G T CRYBG3 Missense_Mutation p.R345I 0.34 deleterious(0) benign(0.307) TCGA-BR-8680-01 3 9760228 9760228 C T CPNE9 Missense_Mutation p.R395C 0.35 deleterious(0) probably_damaging(0.976) TCGA-BR-8680-01 3 97744433 97744433 G A GABRR3 RNA 0.50 TCGA-BR-8680-01 3 97888229 97888229 A C OR5H15 Missense_Mutation p.K229T 0.34 deleterious(0) possibly_damaging(0.772) TCGA-BR-8680-01 3 98217437 98217437 C A OR5K2 Missense_Mutation p.L305M 0.37 tolerated(0.76) benign(0.025) TCGA-BR-8680-01 3 98251081 98251081 C T GPR15 Silent p.I68I 0.39 TCGA-BR-8680-01 3 98251082 98251082 G A GPR15 Missense_Mutation p.D69N 0.36 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 3 9831496 9831496 C T TADA3 Missense_Mutation p.R120Q 0.30 deleterious(0.01) probably_damaging(0.974) TCGA-BR-8680-01 3 98487301 98487301 T C ST3GAL6 Missense_Mutation p.V6A 0.42 deleterious_low_confidence(0.02) benign(0.063) TCGA-BR-8680-01 3 98536721 98536721 T C DCBLD2 Silent p.G368G 0.37 TCGA-BR-8680-01 3 9911628 9911628 A C CIDEC Silent p.T174T 0.33 TCGA-BR-8680-01 3 9950918 9950918 G A IL17RE Silent p.E251E 0.33 TCGA-BR-8680-01 3 99568649 99568649 T G FILIP1L Missense_Mutation p.K624T 0.41 deleterious(0) probably_damaging(0.963) TCGA-BR-8680-01 3 9959714 9959714 G A IL17RC Missense_Mutation p.D150N 0.45 tolerated(0.36) benign(0.003) TCGA-BR-8680-01 3 99648715 99648715 C A FILIP1L Missense_Mutation p.E137D 0.08 deleterious(0.02) probably_damaging(0.993) TCGA-BR-8680-01 3 99890693 99890693 G A CMSS1 Missense_Mutation p.A177T 0.43 tolerated(0.48) benign(0.026) TCGA-BR-8680-01 4 100082205 100082205 T C RP11-696N14.1 Intron 0.38 TCGA-BR-8680-01 4 100126121 100126121 T G ADH6 Missense_Mutation p.K355T 0.25 deleterious(0) benign(0.205) TCGA-BR-8680-01 4 100131414 100131414 A C ADH6 Missense_Mutation p.F131C 0.24 deleterious(0) probably_damaging(0.992) TCGA-BR-8680-01 4 100201343 100201343 G A ADH1A Silent p.L308L 0.33 TCGA-BR-8680-01 4 100470213 100470213 T G TRMT10A 3'UTR 0.29 TCGA-BR-8680-01 4 100521856 100521856 C A MTTP Missense_Mutation p.S401Y 0.29 deleterious(0) probably_damaging(0.958) TCGA-BR-8680-01 4 100803066 100803066 A C LAMTOR3 3'UTR 0.32 TCGA-BR-8680-01 4 101342465 101342465 T A EMCN Missense_Mutation p.Y213F 0.35 deleterious(0) probably_damaging(0.973) TCGA-BR-8680-01 4 103226180 103226180 C T SLC39A8 Missense_Mutation p.R214K 0.38 tolerated(1) benign(0.402) TCGA-BR-8680-01 4 103747704 103747704 T C UBE2D3 Intron 0.37 TCGA-BR-8680-01 4 103966064 103966064 A C SLC9B2 Missense_Mutation p.F327V 0.25 deleterious(0) probably_damaging(0.934) TCGA-BR-8680-01 4 104003289 104003289 G A BDH2 Silent p.F211F 0.26 TCGA-BR-8680-01 4 104080192 104080192 G A CENPE Missense_Mutation p.S859L 0.27 benign(0) TCGA-BR-8680-01 4 104081903 104081903 A C CENPE Missense_Mutation p.I722S 0.32 possibly_damaging(0.548) TCGA-BR-8680-01 4 104098057 104098057 T C CENPE Silent p.E463E 0.50 TCGA-BR-8680-01 4 104116366 104116366 G A CENPE Missense_Mutation p.R128C 0.29 probably_damaging(1) TCGA-BR-8680-01 4 104117407 104117407 G A CENPE Missense_Mutation p.R51C 0.29 probably_damaging(1) TCGA-BR-8680-01 4 106156276 106156276 T G TET2 Missense_Mutation p.S393A 0.29 deleterious(0.02) benign(0.156) TCGA-BR-8680-01 4 106156313 106156313 T G TET2 Missense_Mutation p.L405R 0.27 tolerated_low_confidence(0.27) benign(0.083) TCGA-BR-8680-01 4 106156805 106156805 C T TET2 Missense_Mutation p.A569V 0.19 deleterious(0.03) benign(0.193) TCGA-BR-8680-01 4 106377901 106377901 C A PPA2 Missense_Mutation p.K53N 0.25 deleterious(0.03) benign(0.372) TCGA-BR-8680-01 4 108824539 108824539 G T SGMS2 Nonsense_Mutation p.E242* 0.34 TCGA-BR-8680-01 4 108866502 108866502 A C CYP2U1 Missense_Mutation p.Q289H 0.41 deleterious(0.01) benign(0.142) TCGA-BR-8680-01 4 108866523 108866523 T C CYP2U1 Silent p.S296S 0.42 TCGA-BR-8680-01 4 108870649 108870649 G T CYP2U1 Nonsense_Mutation p.E478* 0.28 TCGA-BR-8680-01 4 108871593 108871593 G T CYP2U1 3'UTR 0.41 TCGA-BR-8680-01 4 109088941 109088941 C A LEF1 5'UTR 0.31 TCGA-BR-8680-01 4 109663646 109663646 C A ETNPPL Missense_Mutation p.K498N 0.30 deleterious_low_confidence(0) possibly_damaging(0.493) TCGA-BR-8680-01 4 109745296 109745296 T C COL25A1 Intron 0.45 TCGA-BR-8680-01 4 109895713 109895713 G A COL25A1 Silent p.G147G 0.28 TCGA-BR-8680-01 4 110434991 110434991 C A SEC24B Missense_Mutation p.F664L 0.38 deleterious(0) benign(0.143) TCGA-BR-8680-01 4 110446055 110446055 T G SEC24B Missense_Mutation p.L864V 0.28 deleterious(0.03) probably_damaging(0.998) TCGA-BR-8680-01 4 110451453 110451453 C T SEC24B Missense_Mutation p.R1029W 0.25 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 4 110605624 110605624 C T CCDC109B Missense_Mutation p.S213L 0.33 deleterious(0) possibly_damaging(0.523) TCGA-BR-8680-01 4 110687839 110687839 A G CFI Missense_Mutation p.C67R 0.29 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 4 110862234 110862234 G T EGF Missense_Mutation p.R87I 0.27 deleterious(0.02) benign(0.012) TCGA-BR-8680-01 4 110901199 110901199 A C EGF Silent p.R709R 0.31 TCGA-BR-8680-01 4 111542364 111542364 C T PITX2 Missense_Mutation p.E123K 0.45 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 4 113508552 113508552 A G C4orf21 Missense_Mutation p.S1221P 0.33 tolerated(0.19) benign(0.002) TCGA-BR-8680-01 4 113508887 113508887 A C C4orf21 Missense_Mutation p.L1109R 0.27 deleterious(0.02) benign(0.022) TCGA-BR-8680-01 4 113545027 113545027 A C C4orf21 Missense_Mutation p.I36M 0.21 deleterious(0.01) possibly_damaging(0.571) TCGA-BR-8680-01 4 113578496 113578496 T G LARP7 3'UTR 0.29 TCGA-BR-8680-01 4 11400898 11400898 C T HS3ST1 Silent p.S244S 0.34 TCGA-BR-8680-01 4 114276905 114276905 C T ANK2 Silent p.D2377D 0.31 TCGA-BR-8680-01 4 114278303 114278303 C T ANK2 Silent p.S2843S 0.33 TCGA-BR-8680-01 4 114284541 114284541 C T ANK2 Nonsense_Mutation p.R3602* 0.30 TCGA-BR-8680-01 4 115898385 115898385 A C NDST4 Missense_Mutation p.F342V 0.44 deleterious(0) possibly_damaging(0.761) TCGA-BR-8680-01 4 1164274 1164274 G A SPON2 Missense_Mutation p.R243W 0.36 deleterious(0) probably_damaging(0.915) TCGA-BR-8680-01 4 118975799 118975799 C A NDST3 Missense_Mutation p.S245Y 0.44 tolerated(0.19) possibly_damaging(0.58) TCGA-BR-8680-01 4 118975970 118975970 A G NDST3 Missense_Mutation p.D302G 0.39 deleterious(0) benign(0.424) TCGA-BR-8680-01 4 119229642 119229642 T C PRSS12 Missense_Mutation p.D527G 0.34 deleterious(0.02) probably_damaging(0.99) TCGA-BR-8680-01 4 119952619 119952619 G A SYNPO2 Missense_Mutation p.A897T 0.38 tolerated(0.36) benign(0.013) TCGA-BR-8680-01 4 119952769 119952769 C T SYNPO2 Missense_Mutation p.P947S 0.41 tolerated(0.14) benign(0.009) TCGA-BR-8680-01 4 119953078 119953078 C T SYNPO2 Missense_Mutation p.P1050S 0.32 tolerated(0.07) benign(0.396) TCGA-BR-8680-01 4 120192574 120192574 G A USP53 Missense_Mutation p.R520Q 0.32 tolerated(0.08) benign(0.082) TCGA-BR-8680-01 4 120213820 120213820 G A USP53 Silent p.E892E 0.33 TCGA-BR-8680-01 4 120419777 120419777 G A PDE5A Silent p.S869S 0.37 TCGA-BR-8680-01 4 121957679 121957679 T G NDNF Missense_Mutation p.K483Q 0.34 deleterious(0.01) benign(0.243) TCGA-BR-8680-01 4 121958329 121958329 C T NDNF Missense_Mutation p.R266H 0.37 tolerated(0.54) possibly_damaging(0.73) TCGA-BR-8680-01 4 122250697 122250697 G A QRFPR Silent p.F356F 0.31 TCGA-BR-8680-01 4 122681394 122681394 G T TMEM155 3'UTR 0.07 TCGA-BR-8680-01 4 122732818 122732818 A C EXOSC9 Missense_Mutation p.Q273H 0.45 deleterious(0.04) benign(0.137) TCGA-BR-8680-01 4 123160734 123160734 T C KIAA1109 Silent p.G1299G 0.29 TCGA-BR-8680-01 4 123179988 123179988 T C KIAA1109 Missense_Mutation p.L2251S 0.25 possibly_damaging(0.835) TCGA-BR-8680-01 4 123265632 123265632 C T KIAA1109 Missense_Mutation p.R4217C 0.26 possibly_damaging(0.582) TCGA-BR-8680-01 4 123274229 123274229 C T KIAA1109 Missense_Mutation p.R4674C 0.30 probably_damaging(0.999) TCGA-BR-8680-01 4 123336586 123336586 T C ADAD1 Silent p.R434R 0.29 TCGA-BR-8680-01 4 123663068 123663068 C T BBS12 Silent p.V7V 0.36 TCGA-BR-8680-01 4 123818804 123818804 G A NUDT6 Silent p.G176G 0.38 TCGA-BR-8680-01 4 123838690 123838690 T G NUDT6 Missense_Mutation p.L136F 0.23 deleterious(0) probably_damaging(0.994) TCGA-BR-8680-01 4 126239987 126239987 G A FAT4 Silent p.A807A 0.37 TCGA-BR-8680-01 4 126328095 126328095 G A FAT4 Missense_Mutation p.D1790N 0.27 probably_damaging(1) TCGA-BR-8680-01 4 126328144 126328144 G A FAT4 Missense_Mutation p.R1806H 0.30 benign(0.066) TCGA-BR-8680-01 4 126371220 126371220 T C FAT4 Missense_Mutation p.S3017P 0.38 probably_damaging(0.992) TCGA-BR-8680-01 4 126372053 126372053 T C FAT4 Silent p.Y3294Y 0.27 TCGA-BR-8680-01 4 126372616 126372616 C A FAT4 Missense_Mutation p.A3482D 0.30 probably_damaging(1) TCGA-BR-8680-01 4 126400929 126400929 C T FAT4 Silent p.S4169S 0.22 TCGA-BR-8680-01 4 126412663 126412663 C T FAT4 Missense_Mutation p.R4896C 0.32 possibly_damaging(0.77) TCGA-BR-8680-01 4 128694800 128694800 A G SLC25A31 3'UTR 0.58 TCGA-BR-8680-01 4 128739553 128739553 A G HSPA4L Missense_Mutation p.D551G 0.32 tolerated(0.14) benign(0.158) TCGA-BR-8680-01 4 128804620 128804620 T G PLK4 Missense_Mutation p.N83K 0.25 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 4 128941239 128941239 C T C4orf29 Missense_Mutation p.A205V 0.24 deleterious(0.02) probably_damaging(0.999) TCGA-BR-8680-01 4 1333066 1333066 G A MAEA 3'UTR 0.43 TCGA-BR-8680-01 4 13339641 13339641 C T HSP90AB2P RNA 0.40 TCGA-BR-8680-01 4 13383192 13383192 T G RAB28 Missense_Mutation p.K140Q 0.25 deleterious(0.02) benign(0.431) TCGA-BR-8680-01 4 134071595 134071595 G T PCDH10 Missense_Mutation p.E100D 0.29 deleterious(0.01) benign(0.083) TCGA-BR-8680-01 4 134072121 134072121 G A PCDH10 Missense_Mutation p.D276N 0.33 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 4 134075511 134075511 G A PCDH10 Missense_Mutation p.R894Q 0.41 tolerated(0.22) possibly_damaging(0.663) TCGA-BR-8680-01 4 13579056 13579056 T G BOD1L1 Missense_Mutation p.K2952T 0.32 probably_damaging(0.992) TCGA-BR-8680-01 4 13603585 13603585 T C BOD1L1 Missense_Mutation p.T1647A 0.32 benign(0.254) TCGA-BR-8680-01 4 13603599 13603599 A G BOD1L1 Missense_Mutation p.V1642A 0.32 benign(0.005) TCGA-BR-8680-01 4 138450792 138450792 G T PCDH18 Missense_Mutation p.F817L 0.33 tolerated(0.11) possibly_damaging(0.688) TCGA-BR-8680-01 4 138451451 138451451 A C PCDH18 Missense_Mutation p.F598V 0.38 tolerated(0.14) benign(0.063) TCGA-BR-8680-01 4 138451957 138451957 G T PCDH18 Missense_Mutation p.S429Y 0.28 deleterious(0.02) probably_damaging(0.996) TCGA-BR-8680-01 4 138452515 138452515 C T PCDH18 Missense_Mutation p.S243N 0.34 deleterious(0.05) benign(0.076) TCGA-BR-8680-01 4 1389618 1389618 C A CRIPAK Missense_Mutation p.S440Y 0.34 deleterious_low_confidence(0) probably_damaging(0.919) TCGA-BR-8680-01 4 140306065 140306065 G A NAA15 Silent p.T745T 0.31 TCGA-BR-8680-01 4 140306076 140306076 A C NAA15 Missense_Mutation p.N749T 0.08 tolerated(0.39) benign(0.006) TCGA-BR-8680-01 4 141315154 141315154 G A CLGN Silent p.F397F 0.27 TCGA-BR-8680-01 4 141489041 141489041 T G UCP1 Missense_Mutation p.K73Q 0.29 deleterious(0.01) probably_damaging(0.996) TCGA-BR-8680-01 4 142053630 142053630 C T RNF150 Silent p.P111P 0.42 TCGA-BR-8680-01 4 144390300 144390300 A G GAB1 Silent p.R711R 0.22 TCGA-BR-8680-01 4 144471198 144471198 A C SMARCA5 Missense_Mutation p.N1012H 0.29 tolerated(0.41) probably_damaging(0.992) TCGA-BR-8680-01 4 145573877 145573877 G T HHIP Missense_Mutation p.D134Y 0.36 deleterious(0) possibly_damaging(0.815) TCGA-BR-8680-01 4 145581007 145581007 T G HHIP Intron 0.37 TCGA-BR-8680-01 4 145629371 145629371 C T HHIP Silent p.N403N 0.27 TCGA-BR-8680-01 4 146059262 146059262 C T OTUD4 Missense_Mutation p.E824K 0.29 tolerated(0.29) possibly_damaging(0.574) TCGA-BR-8680-01 4 146071967 146071967 T G OTUD4 Missense_Mutation p.Q288H 0.43 tolerated(0.18) possibly_damaging(0.853) TCGA-BR-8680-01 4 146071986 146071986 T G OTUD4 Missense_Mutation p.K282T 0.40 tolerated(0.05) probably_damaging(0.962) TCGA-BR-8680-01 4 146807209 146807209 C T ZNF827 Silent p.Q456Q 0.27 TCGA-BR-8680-01 4 146859541 146859541 C T ZNF827 Missense_Mutation p.E7K 0.36 deleterious_low_confidence(0.01) benign(0.023) TCGA-BR-8680-01 4 146859601 146859601 A G ZNF827 5'UTR 0.35 TCGA-BR-8680-01 4 148539147 148539147 A G TMEM184C Missense_Mutation p.I14V 0.32 deleterious(0.05) benign(0.057) TCGA-BR-8680-01 4 148554919 148554919 T G TMEM184C Missense_Mutation p.F295V 0.31 deleterious(0) possibly_damaging(0.786) TCGA-BR-8680-01 4 148582140 148582140 A G PRMT10 Missense_Mutation p.F335L 0.39 tolerated(0.38) benign(0.09) TCGA-BR-8680-01 4 149041348 149041348 C T NR3C2 Missense_Mutation p.E868K 0.33 deleterious(0) possibly_damaging(0.837) TCGA-BR-8680-01 4 151356761 151356761 G A LRBA Missense_Mutation p.R2352C 0.27 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 4 151773634 151773634 A G LRBA Silent p.S1076S 0.27 TCGA-BR-8680-01 4 151827471 151827471 A G LRBA Missense_Mutation p.V527A 0.22 deleterious(0) probably_damaging(0.989) TCGA-BR-8680-01 4 151849672 151849672 C T LRBA Missense_Mutation p.R182Q 0.25 tolerated(0.76) benign(0) TCGA-BR-8680-01 4 152086764 152086764 C T SH3D19 Missense_Mutation p.R260Q 0.36 deleterious(0) probably_damaging(0.98) TCGA-BR-8680-01 4 152679967 152679967 G T PET112 Missense_Mutation p.S95Y 0.27 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 4 153332915 153332915 C T FBXW7 Missense_Mutation p.R14Q 0.28 deleterious_low_confidence(0.03) unknown(0) TCGA-BR-8680-01 4 153690733 153690733 G A TIGD4 Missense_Mutation p.A475V 0.38 deleterious(0) possibly_damaging(0.504) TCGA-BR-8680-01 4 153691842 153691842 A C TIGD4 Silent p.V105V 0.31 TCGA-BR-8680-01 4 153896828 153896828 C T FHDC1 Silent p.G795G 0.35 TCGA-BR-8680-01 4 15504497 15504497 G A CC2D2A Missense_Mutation p.R130H 0.33 tolerated_low_confidence(0.09) benign(0.019) TCGA-BR-8680-01 4 155242229 155242229 A C DCHS2 Missense_Mutation p.F986C 0.42 deleterious(0) probably_damaging(0.99) TCGA-BR-8680-01 4 155298497 155298497 C T DCHS2 Missense_Mutation p.D112N 0.33 tolerated(0.26) benign(0.304) TCGA-BR-8680-01 4 155467 155467 G A ZNF718 RNA 0.42 TCGA-BR-8680-01 4 155505592 155505592 G A FGA Missense_Mutation p.A762V 0.33 deleterious(0) probably_damaging(0.993) TCGA-BR-8680-01 4 155717946 155717946 A C RBM46 Missense_Mutation p.K14N 0.24 tolerated(0.1) benign(0.062) TCGA-BR-8680-01 4 155720683 155720683 G A RBM46 Missense_Mutation p.E457K 0.25 tolerated(0.15) probably_damaging(0.996) TCGA-BR-8680-01 4 15581677 15581677 C T CC2D2A Silent p.C1286C 0.08 TCGA-BR-8680-01 4 15589443 15589443 T G CC2D2A Missense_Mutation p.F1357C 0.32 tolerated(0.13) possibly_damaging(0.844) TCGA-BR-8680-01 4 15627020 15627020 T G FBXL5 Missense_Mutation p.M569L 0.35 tolerated(1) benign(0) TCGA-BR-8680-01 4 156281545 156281545 T G MAP9 Missense_Mutation p.E275D 0.36 tolerated(0.23) possibly_damaging(0.536) TCGA-BR-8680-01 4 156294541 156294541 A C MAP9 Missense_Mutation p.F76L 0.32 tolerated(0.05) probably_damaging(0.999) TCGA-BR-8680-01 4 156632398 156632398 T G GUCY1A3 Missense_Mutation p.S361A 0.33 tolerated(0.77) benign(0.069) TCGA-BR-8680-01 4 156725805 156725805 C T GUCY1B3 Nonsense_Mutation p.R539* 0.30 TCGA-BR-8680-01 4 156847209 156847209 G A CTSO Silent p.S315S 0.24 TCGA-BR-8680-01 4 156860584 156860584 G A CTSO Missense_Mutation p.S164L 0.27 deleterious(0) probably_damaging(0.99) TCGA-BR-8680-01 4 158257880 158257880 G T GRIA2 Nonsense_Mutation p.G609* 0.32 TCGA-BR-8680-01 4 158262455 158262455 C A GRIA2 Missense_Mutation p.F628L 0.35 deleterious(0) probably_damaging(0.998) TCGA-BR-8680-01 4 158262572 158262572 T G GRIA2 Silent p.A667A 0.40 TCGA-BR-8680-01 4 15850203 15850203 C A CD38 Nonsense_Mutation p.S294* 0.25 TCGA-BR-8680-01 4 159567986 159567986 C T RXFP1 Silent p.G463G 0.25 TCGA-BR-8680-01 4 159644354 159644354 A G PPID Splice_Site p.X29_splice 0.25 TCGA-BR-8680-01 4 159789335 159789335 G A FNIP2 Missense_Mutation p.R516Q 0.36 deleterious(0.05) possibly_damaging(0.813) TCGA-BR-8680-01 4 159956286 159956286 C T C4orf45 5'UTR 0.23 TCGA-BR-8680-01 4 160235815 160235815 G A RAPGEF2 Missense_Mutation p.D89N 0.25 deleterious(0.02) benign(0.012) TCGA-BR-8680-01 4 160252923 160252923 T G RAPGEF2 Missense_Mutation p.F412V 0.29 deleterious(0) probably_damaging(0.998) TCGA-BR-8680-01 4 162402200 162402200 A G FSTL5 Missense_Mutation p.V527A 0.36 deleterious(0) probably_damaging(0.93) TCGA-BR-8680-01 4 162402250 162402250 T G FSTL5 Missense_Mutation p.K510N 0.06 tolerated(0.08) probably_damaging(0.977) TCGA-BR-8680-01 4 162463795 162463795 C T FSTL5 Missense_Mutation p.V356I 0.10 deleterious(0.04) probably_damaging(0.977) TCGA-BR-8680-01 4 164247294 164247294 C T NPY1R Missense_Mutation p.R138Q 0.43 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 4 164393208 164393208 A C TKTL2 Missense_Mutation p.V560G 0.24 deleterious(0) possibly_damaging(0.892) TCGA-BR-8680-01 4 164394533 164394533 A C TKTL2 Missense_Mutation p.F118L 0.26 tolerated(0.06) benign(0.38) TCGA-BR-8680-01 4 165891030 165891030 A G TRIM61 Missense_Mutation p.M42T 0.19 tolerated(0.14) benign(0.154) TCGA-BR-8680-01 4 166021968 166021968 C T TMEM192 Missense_Mutation p.G84E 0.19 tolerated(0.13) benign(0.299) TCGA-BR-8680-01 4 166141156 166141156 A G KLHL2 Missense_Mutation p.T37A 0.20 tolerated_low_confidence(0.44) benign(0.066) TCGA-BR-8680-01 4 166232625 166232625 C T KLHL2 Missense_Mutation p.S420F 0.34 deleterious(0) probably_damaging(0.99) TCGA-BR-8680-01 4 166243336 166243336 G A KLHL2 3'UTR 0.30 TCGA-BR-8680-01 4 166403472 166403472 G T CPE Missense_Mutation p.D251Y 0.35 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 4 166999181 166999181 T G TLL1 Nonsense_Mutation p.L814* 0.37 TCGA-BR-8680-01 4 167983790 167983790 A C SPOCK3 Intron 0.41 TCGA-BR-8680-01 4 169194428 169194428 A G DDX60 Splice_Site p.X858_splice 0.35 TCGA-BR-8680-01 4 169197322 169197322 C T DDX60 Silent p.T663T 0.28 TCGA-BR-8680-01 4 169305863 169305863 A G DDX60L Missense_Mutation p.V1339A 0.44 deleterious(0) possibly_damaging(0.787) TCGA-BR-8680-01 4 170428878 170428878 G A NEK1 Silent p.I633I 0.31 TCGA-BR-8680-01 4 170913428 170913428 T C MFAP3L Missense_Mutation p.N111D 0.26 deleterious(0.03) probably_damaging(0.923) TCGA-BR-8680-01 4 173930333 173930333 G A GALNTL6 Missense_Mutation p.R459Q 0.23 tolerated(0.37) benign(0.037) TCGA-BR-8680-01 4 174294593 174294593 G A SAP30 Missense_Mutation p.R123Q 0.31 deleterious(0) probably_damaging(0.968) TCGA-BR-8680-01 4 174298430 174298430 G T SAP30 Missense_Mutation p.K205N 0.29 deleterious(0) benign(0.386) TCGA-BR-8680-01 4 175238599 175238599 C A CEP44 Intron 0.27 TCGA-BR-8680-01 4 17528593 17528593 C T CLRN2 Missense_Mutation p.A196V 0.38 tolerated(0.55) probably_damaging(0.998) TCGA-BR-8680-01 4 17609289 17609289 A C LAP3 3'UTR 0.31 TCGA-BR-8680-01 4 177067147 177067147 G A WDR17 Missense_Mutation p.D535N 0.15 tolerated(0.11) benign(0.047) TCGA-BR-8680-01 4 177105979 177105979 A C SPATA4 Silent p.S290S 0.27 TCGA-BR-8680-01 4 177109304 177109304 T G SPATA4 Missense_Mutation p.L257F 0.31 tolerated(0.5) benign(0.069) TCGA-BR-8680-01 4 177113869 177113869 G A SPATA4 Silent p.S199S 0.29 TCGA-BR-8680-01 4 177136836 177136836 C T ASB5 Missense_Mutation p.R302Q 0.36 deleterious(0.02) probably_damaging(0.975) TCGA-BR-8680-01 4 177243323 177243323 A C SPCS3 Missense_Mutation p.K49T 0.37 deleterious(0) benign(0.2) TCGA-BR-8680-01 4 177649045 177649045 C T VEGFC Missense_Mutation p.A147T 0.29 tolerated(0.4) benign(0.005) TCGA-BR-8680-01 4 177650885 177650885 C A VEGFC Missense_Mutation p.D55Y 0.25 deleterious(0) possibly_damaging(0.86) TCGA-BR-8680-01 4 178352825 178352825 T G AGA 3'UTR 0.37 TCGA-BR-8680-01 4 178354419 178354419 A C AGA Missense_Mutation p.F297V 0.33 tolerated(0.08) benign(0.017) TCGA-BR-8680-01 4 17838918 17838918 G A NCAPG Missense_Mutation p.R749Q 0.27 deleterious(0) probably_damaging(0.997) TCGA-BR-8680-01 4 17845005 17845005 G A NCAPG Missense_Mutation p.S1002N 0.05 deleterious(0) benign(0.275) TCGA-BR-8680-01 4 1805474 1805474 T C FGFR3 Intron 0.30 TCGA-BR-8680-01 4 183714517 183714517 G T TENM3 Missense_Mutation p.G2231V 0.38 deleterious(0) probably_damaging(0.972) TCGA-BR-8680-01 4 184205450 184205450 C T WWC2 Silent p.S985S 0.30 TCGA-BR-8680-01 4 184240709 184240709 T G CLDN22 Nonstop_Mutation p.*221Yext*45 0.29 TCGA-BR-8680-01 4 184931772 184931772 A G STOX2 Missense_Mutation p.K594R 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.835) TCGA-BR-8680-01 4 185340688 185340688 G A IRF2 Missense_Mutation p.A41V 0.23 deleterious(0) probably_damaging(0.919) TCGA-BR-8680-01 4 185940639 185940639 G A HELT Silent p.A86A 0.31 TCGA-BR-8680-01 4 186244746 186244746 C A SNX25 Missense_Mutation p.S350Y 0.27 tolerated(0.17) benign(0.389) TCGA-BR-8680-01 4 186272701 186272701 A C SNX25 Missense_Mutation p.N638H 0.33 deleterious(0.01) benign(0.111) TCGA-BR-8680-01 4 186278858 186278858 T G SNX25 Missense_Mutation p.L709R 0.26 deleterious(0) probably_damaging(0.979) TCGA-BR-8680-01 4 186288369 186288369 C A LRP2BP Nonsense_Mutation p.E337* 0.33 TCGA-BR-8680-01 4 186321291 186321291 T G ANKRD37 3'UTR 0.25 TCGA-BR-8680-01 4 186380271 186380271 A C CCDC110 Missense_Mutation p.I490M 0.16 tolerated(0.41) possibly_damaging(0.747) TCGA-BR-8680-01 4 186381000 186381000 T G CCDC110 Missense_Mutation p.Q247H 0.35 tolerated(0.36) benign(0.011) TCGA-BR-8680-01 4 186536109 186536109 A C SORBS2 Missense_Mutation p.L1020R 0.28 deleterious(0) probably_damaging(0.951) TCGA-BR-8680-01 4 187003649 187003649 G A TLR3 Missense_Mutation p.G270E 0.32 deleterious(0.05) probably_damaging(0.998) TCGA-BR-8680-01 4 187088351 187088351 G A FAM149A Missense_Mutation p.R437Q 0.36 tolerated(0.68) benign(0.079) TCGA-BR-8680-01 4 187455635 187455635 C T MTNR1A Silent p.S87S 0.34 TCGA-BR-8680-01 4 187517847 187517847 C T FAT1 Missense_Mutation p.E4283K 0.38 probably_damaging(0.998) TCGA-BR-8680-01 4 187524488 187524488 A C FAT1 Missense_Mutation p.L3731R 0.44 possibly_damaging(0.775) TCGA-BR-8680-01 4 187524871 187524871 T G FAT1 Missense_Mutation p.K3603N 0.45 benign(0.083) TCGA-BR-8680-01 4 187532563 187532563 T G FAT1 Missense_Mutation p.K3277T 0.36 possibly_damaging(0.593) TCGA-BR-8680-01 4 187541629 187541629 C T FAT1 Silent p.T2037T 0.28 TCGA-BR-8680-01 4 187542860 187542860 C T FAT1 Missense_Mutation p.R1627Q 0.36 benign(0.055) TCGA-BR-8680-01 4 187549793 187549793 T G FAT1 Missense_Mutation p.Q1483P 0.25 benign(0.167) TCGA-BR-8680-01 4 189012796 189012796 C T TRIML2 Missense_Mutation p.E299K 0.26 tolerated(0.06) benign(0.027) TCGA-BR-8680-01 4 189064957 189064957 C T TRIML1 Intron 0.25 TCGA-BR-8680-01 4 1902902 1902902 A C WHSC1 Missense_Mutation p.K174T 0.32 deleterious(0.02) benign(0.199) TCGA-BR-8680-01 4 1985339 1985339 G T NELFA Missense_Mutation p.F473L 0.29 deleterious(0) possibly_damaging(0.682) TCGA-BR-8680-01 4 20598177 20598177 G A SLIT2 Missense_Mutation p.E1154K 0.37 tolerated(1) benign(0.111) TCGA-BR-8680-01 4 20618673 20618673 T G SLIT2 Missense_Mutation p.L1330V 0.33 tolerated(1) benign(0.004) TCGA-BR-8680-01 4 2172450 2172450 G A POLN Missense_Mutation p.P504S 0.32 deleterious(0.03) possibly_damaging(0.612) TCGA-BR-8680-01 4 2210191 2210191 C T POLN Silent p.Q79Q 0.34 TCGA-BR-8680-01 4 2252282 2252282 C T MXD4 Missense_Mutation p.A207T 0.25 deleterious_low_confidence(0.04) benign(0.053) TCGA-BR-8680-01 4 24550623 24550623 C A DHX15 Missense_Mutation p.R368I 0.38 tolerated(0.29) possibly_damaging(0.726) TCGA-BR-8680-01 4 247977 247977 T C ZNF876P RNA 0.17 TCGA-BR-8680-01 4 248195 248195 G T ZNF876P RNA 0.34 TCGA-BR-8680-01 4 248322 248322 C T ZNF876P RNA 0.20 TCGA-BR-8680-01 4 25019737 25019737 A C LGI2 Missense_Mutation p.W177G 0.30 deleterious(0) probably_damaging(0.998) TCGA-BR-8680-01 4 25030162 25030162 C T LGI2 Missense_Mutation p.R79Q 0.33 deleterious(0.04) benign(0.336) TCGA-BR-8680-01 4 25315706 25315706 G T ZCCHC4 Nonsense_Mutation p.E56* 0.36 TCGA-BR-8680-01 4 25665855 25665855 C A SLC34A2 Missense_Mutation p.F94L 0.41 tolerated(0.1) benign(0) TCGA-BR-8680-01 4 25769163 25769163 G A SEL1L3 Silent p.I943I 0.58 TCGA-BR-8680-01 4 25834646 25834646 G A SEL1L3 Nonsense_Mutation p.R357* 0.34 TCGA-BR-8680-01 4 26407849 26407849 C T RBPJ Missense_Mutation p.L51F 0.36 tolerated(0.21) benign(0.209) TCGA-BR-8680-01 4 26483749 26483749 G A CCKAR Silent p.S266S 0.33 TCGA-BR-8680-01 4 266034 266034 A T ZNF732 Missense_Mutation p.F204L 0.41 deleterious(0.03) probably_damaging(0.95) TCGA-BR-8680-01 4 26685314 26685314 G A TBC1D19 Silent p.E278E 0.26 TCGA-BR-8680-01 4 2673955 2673955 C A FAM193A Missense_Mutation p.F438L 0.34 tolerated(0.1) probably_damaging(0.961) TCGA-BR-8680-01 4 27019550 27019550 G A STIM2 Silent p.A577A 0.31 TCGA-BR-8680-01 4 289920 289920 C T ZNF732 Missense_Mutation p.A10T 0.36 tolerated(0.11) benign(0.037) TCGA-BR-8680-01 4 3006044 3006044 C A GRK4 Silent p.A142A 0.29 TCGA-BR-8680-01 4 30723560 30723560 C T PCDH7 Silent p.F172F 0.44 TCGA-BR-8680-01 4 30723906 30723906 C T PCDH7 Missense_Mutation p.R288C 0.26 deleterious(0) probably_damaging(0.921) TCGA-BR-8680-01 4 3088673 3088673 G T HTT Nonsense_Mutation p.E91* 0.29 TCGA-BR-8680-01 4 3138026 3138026 G A HTT Missense_Mutation p.R924Q 0.34 probably_damaging(0.998) TCGA-BR-8680-01 4 3184144 3184144 C T HTT Nonsense_Mutation p.R1605* 0.36 TCGA-BR-8680-01 4 3210534 3210534 C T HTT Missense_Mutation p.R2063C 0.26 probably_damaging(0.987) TCGA-BR-8680-01 4 3318097 3318097 T C RGS12 Missense_Mutation p.V67A 0.36 deleterious(0.01) possibly_damaging(0.771) TCGA-BR-8680-01 4 3449301 3449301 G A HGFAC Missense_Mutation p.E480K 0.33 deleterious(0.01) possibly_damaging(0.797) TCGA-BR-8680-01 4 3516638 3516638 G A LRPAP1 Silent p.F284F 0.34 TCGA-BR-8680-01 4 37962363 37962363 C A PTTG2 Missense_Mutation p.S103Y 0.31 tolerated(0.42) probably_damaging(0.967) TCGA-BR-8680-01 4 38690382 38690382 G A KLF3 Silent p.S78S 0.31 TCGA-BR-8680-01 4 38696436 38696437 - AA KLF3 Frame_Shift_Ins p.R257Sfs*22 0.23 TCGA-BR-8680-01 4 38775961 38775961 G A TLR10 Silent p.C417C 0.18 TCGA-BR-8680-01 4 38799017 38799017 G T TLR1 Missense_Mutation p.S479Y 0.42 tolerated(1) benign(0.056) TCGA-BR-8680-01 4 38799487 38799487 G T TLR1 Silent p.I322I 0.27 TCGA-BR-8680-01 4 39000286 39000286 A C TMEM156 Missense_Mutation p.F111C 0.44 deleterious(0.01) probably_damaging(0.971) TCGA-BR-8680-01 4 39276564 39276564 C T WDR19 Silent p.I1234I 0.32 TCGA-BR-8680-01 4 39290437 39290437 T G RFC1 Missense_Mutation p.K1131Q 0.29 deleterious_low_confidence(0.02) possibly_damaging(0.788) TCGA-BR-8680-01 4 39905808 39905808 G A PDS5A Nonsense_Mutation p.R413* 0.24 TCGA-BR-8680-01 4 40119490 40119490 C T N4BP2 Missense_Mutation p.R556C 0.33 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 4 40823991 40823991 A C APBB2 Missense_Mutation p.F670C 0.36 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 4 41984086 41984086 G A DCAF4L1 Missense_Mutation p.E93K 0.09 tolerated(1) benign(0.008) TCGA-BR-8680-01 4 42414996 42414996 G A ATP8A1 Silent p.I1144I 0.49 TCGA-BR-8680-01 4 4248040 4248040 T G TMEM128 Missense_Mutation p.K19T 0.34 deleterious(0.01) possibly_damaging(0.885) TCGA-BR-8680-01 4 42577698 42577698 C T ATP8A1 Missense_Mutation p.E383K 0.09 tolerated(0.57) probably_damaging(0.98) TCGA-BR-8680-01 4 435862 435862 T G ZNF721 Missense_Mutation p.K798N 0.31 tolerated(0.46) benign(0.091) TCGA-BR-8680-01 4 437198 437198 C A ZNF721 Missense_Mutation p.R353I 0.27 tolerated(0.17) possibly_damaging(0.901) TCGA-BR-8680-01 4 437786 437786 T G ZNF721 Missense_Mutation p.K157T 0.31 deleterious(0.04) benign(0.159) TCGA-BR-8680-01 4 44709820 44709820 C T GNPDA2 Missense_Mutation p.D240N 0.32 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-BR-8680-01 4 466372 466372 A G ZNF721 Missense_Mutation p.V9A 0.33 tolerated(0.18) benign(0.017) TCGA-BR-8680-01 4 46737011 46737011 G A COX7B2 Silent p.L67L 0.31 TCGA-BR-8680-01 4 46930668 46930668 A C GABRA4 Silent p.S413S 0.34 TCGA-BR-8680-01 4 47405722 47405722 G A GABRB1 Missense_Mutation p.A277T 0.27 tolerated(0.06) probably_damaging(0.986) TCGA-BR-8680-01 4 47593305 47593305 A C ATP10D Silent p.G1396G 0.33 TCGA-BR-8680-01 4 47597786 47597786 G A CORIN Silent p.V1027V 0.30 TCGA-BR-8680-01 4 47602261 47602261 G A CORIN Silent p.G972G 0.30 TCGA-BR-8680-01 4 47645079 47645079 C T CORIN Intron 0.42 TCGA-BR-8680-01 4 47663851 47663851 C A CORIN Nonsense_Mutation p.E538* 0.26 TCGA-BR-8680-01 4 47667215 47667215 T G CORIN Missense_Mutation p.N475H 0.25 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 4 47765400 47765400 C A CORIN Missense_Mutation p.D205Y 0.31 deleterious(0.01) probably_damaging(0.951) TCGA-BR-8680-01 4 47887941 47887941 C T NFXL1 Missense_Mutation p.G540D 0.32 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 4 47939313 47939313 T G CNGA1 Missense_Mutation p.I469L 0.26 deleterious(0.02) possibly_damaging(0.891) TCGA-BR-8680-01 4 47942804 47942804 C T CNGA1 Missense_Mutation p.D283N 0.19 deleterious(0) probably_damaging(0.911) TCGA-BR-8680-01 4 48371900 48371900 A C SLAIN2 Missense_Mutation p.M142L 0.49 tolerated(0.86) benign(0) TCGA-BR-8680-01 4 48486071 48486071 G A SLC10A4 Missense_Mutation p.E165K 0.14 tolerated(0.41) benign(0.052) TCGA-BR-8680-01 4 48490559 48490559 T G SLC10A4 Missense_Mutation p.F306C 0.34 deleterious(0) benign(0.122) TCGA-BR-8680-01 4 48501327 48501327 A C FRYL 3'UTR 0.33 TCGA-BR-8680-01 4 48559550 48559550 G A FRYL Missense_Mutation p.R1349C 0.30 tolerated(0.23) probably_damaging(0.997) TCGA-BR-8680-01 4 48577170 48577170 A G FRYL Missense_Mutation p.V937A 0.26 deleterious(0) probably_damaging(0.995) TCGA-BR-8680-01 4 48583531 48583531 A G FRYL Missense_Mutation p.V693A 0.37 deleterious(0.03) probably_damaging(0.935) TCGA-BR-8680-01 4 48611819 48611819 C T FRYL Missense_Mutation p.D145N 0.26 deleterious(0) possibly_damaging(0.572) TCGA-BR-8680-01 4 499698 499698 C T PIGG Silent p.F184F 0.32 TCGA-BR-8680-01 4 5018581 5018581 C A CYTL1 Missense_Mutation p.M103I 0.36 tolerated(0.37) possibly_damaging(0.816) TCGA-BR-8680-01 4 52860895 52860895 T C LRRC66 Missense_Mutation p.K765E 0.27 tolerated(0.13) benign(0.346) TCGA-BR-8680-01 4 52946066 52946066 G A SPATA18 Missense_Mutation p.E446K 0.31 deleterious(0) probably_damaging(0.953) TCGA-BR-8680-01 4 54326993 54326993 A C LNX1 3'UTR 0.36 TCGA-BR-8680-01 4 54343119 54343119 C T LNX1 Missense_Mutation p.E565K 0.26 deleterious(0) possibly_damaging(0.61) TCGA-BR-8680-01 4 54880282 54880282 C T CHIC2 Missense_Mutation p.R112Q 0.29 tolerated(0.3) probably_damaging(0.912) TCGA-BR-8680-01 4 55131147 55131147 G A PDGFRA Silent p.T230T 0.31 TCGA-BR-8680-01 4 55138668 55138668 A G PDGFRA Missense_Mutation p.I449V 0.30 tolerated(1) benign(0) TCGA-BR-8680-01 4 55139855 55139855 C A PDGFRA Missense_Mutation p.L506I 0.35 tolerated(0.42) benign(0.013) TCGA-BR-8680-01 4 5528021 5528021 C T C4orf6 Missense_Mutation p.T82I 0.29 possibly_damaging(0.702) TCGA-BR-8680-01 4 55561801 55561801 T C KIT Missense_Mutation p.V64A 0.28 deleterious(0.05) possibly_damaging(0.893) TCGA-BR-8680-01 4 55575630 55575630 G A KIT Missense_Mutation p.E386K 0.34 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 4 56466696 56466696 A C NMU Nonsense_Mutation p.L161* 0.35 TCGA-BR-8680-01 4 56473499 56473499 G A NMU Missense_Mutation p.S109L 0.32 deleterious(0) probably_damaging(0.994) TCGA-BR-8680-01 4 56736848 56736848 A G EXOC1 Missense_Mutation p.N203S 0.32 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 4 5683025 5683025 T G EVC2 Missense_Mutation p.K278Q 0.30 tolerated(0.41) benign(0.124) TCGA-BR-8680-01 4 56835228 56835228 G A CEP135 Splice_Site p.X349_splice 0.14 TCGA-BR-8680-01 4 56865579 56865579 G T CEP135 Missense_Mutation p.K707N 0.33 tolerated(0.08) benign(0.014) TCGA-BR-8680-01 4 57204655 57204655 A G AASDH Silent p.S1070S 0.20 TCGA-BR-8680-01 4 57220879 57220879 A G AASDH Missense_Mutation p.V401A 0.28 tolerated(0.07) probably_damaging(0.951) TCGA-BR-8680-01 4 57267619 57267619 T C PPAT Missense_Mutation p.I255V 0.33 tolerated(0.08) possibly_damaging(0.729) TCGA-BR-8680-01 4 5750029 5750029 C T EVC Missense_Mutation p.A365V 0.25 tolerated(0.13) benign(0.107) TCGA-BR-8680-01 4 57777156 57777156 G A REST Missense_Mutation p.V118I 0.33 tolerated(0.17) benign(0.102) TCGA-BR-8680-01 4 57796369 57796369 G A REST Missense_Mutation p.E449K 0.28 deleterious(0.02) possibly_damaging(0.637) TCGA-BR-8680-01 4 57797984 57797984 A G REST Missense_Mutation p.K987R 0.34 tolerated(0.12) benign(0.039) TCGA-BR-8680-01 4 57834643 57834643 A C NOA1 Silent p.V518V 0.33 TCGA-BR-8680-01 4 57857005 57857005 G A POLR2B Missense_Mutation p.A62T 0.27 tolerated(0.56) benign(0.004) TCGA-BR-8680-01 4 57889730 57889730 A C POLR2B Missense_Mutation p.K917T 0.37 deleterious(0) probably_damaging(0.978) TCGA-BR-8680-01 4 5862925 5862925 C T CRMP1 Silent p.E161E 0.33 TCGA-BR-8680-01 4 5961154 5961154 C A C4orf50 Missense_Mutation p.S734I 0.24 deleterious(0) probably_damaging(0.996) TCGA-BR-8680-01 4 6066724 6066724 C A JAKMIP1 Silent p.V438V 0.20 TCGA-BR-8680-01 4 6114646 6114646 G A JAKMIP1 5'UTR 0.47 TCGA-BR-8680-01 4 66189733 66189733 C A EPHA5 3'UTR 0.27 TCGA-BR-8680-01 4 66230858 66230858 C A EPHA5 Missense_Mutation p.A705S 0.26 deleterious(0) probably_damaging(0.993) TCGA-BR-8680-01 4 66286258 66286258 T C EPHA5 Silent p.K476K 0.31 TCGA-BR-8680-01 4 66467723 66467723 G T EPHA5 Missense_Mutation p.S182R 0.24 deleterious(0) probably_damaging(0.993) TCGA-BR-8680-01 4 68497427 68497427 A C UBA6 Missense_Mutation p.L753V 0.30 deleterious(0.02) benign(0.119) TCGA-BR-8680-01 4 68930556 68930556 C A TMPRSS11F Nonsense_Mutation p.E288* 0.32 TCGA-BR-8680-01 4 68930577 68930577 G A TMPRSS11F Missense_Mutation p.L281F 0.23 tolerated(0.07) benign(0.016) TCGA-BR-8680-01 4 69198539 69198539 A G YTHDC1 Missense_Mutation p.S334P 0.33 tolerated(0.2) benign(0.009) TCGA-BR-8680-01 4 69203598 69203598 G A YTHDC1 Nonsense_Mutation p.R51* 0.32 TCGA-BR-8680-01 4 69513092 69513092 C A UGT2B15 Missense_Mutation p.E441D 0.27 deleterious(0.03) benign(0.03) TCGA-BR-8680-01 4 69795368 69795368 G T UGT2A3 3'UTR 0.53 TCGA-BR-8680-01 4 7043201 7043201 G A CCDC96 Missense_Mutation p.R489W 0.37 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 4 71096917 71096917 G T FDCSP Missense_Mutation p.K2N 0.28 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-BR-8680-01 4 71200745 71200745 C T CABS1 5'UTR 0.32 TCGA-BR-8680-01 4 71201477 71201477 G A CABS1 Missense_Mutation p.E241K 0.31 tolerated(0.06) benign(0.001) TCGA-BR-8680-01 4 71275761 71275761 T G PROL1 Missense_Mutation p.F239C 0.52 deleterious_low_confidence(0) unknown(0) TCGA-BR-8680-01 4 71346516 71346516 T G MUC7 Missense_Mutation p.F19V 0.37 tolerated(0.24) possibly_damaging(0.494) TCGA-BR-8680-01 4 71347004 71347004 T G MUC7 Silent p.S181S 0.35 TCGA-BR-8680-01 4 71389592 71389592 C A AMTN Missense_Mutation p.P49H 0.31 deleterious(0) probably_damaging(0.961) TCGA-BR-8680-01 4 71497411 71497411 C A ENAM Missense_Mutation p.L27I 0.31 tolerated(0.13) benign(0.177) TCGA-BR-8680-01 4 72423482 72423482 C A SLC4A4 Missense_Mutation p.F939L 0.29 tolerated(0.94) benign(0.009) TCGA-BR-8680-01 4 72429587 72429587 C T SLC4A4 Intron 0.38 TCGA-BR-8680-01 4 72622523 72622523 A C GC Missense_Mutation p.F333V 0.35 tolerated(0.16) benign(0.446) TCGA-BR-8680-01 4 73013275 73013275 A G NPFFR2 Missense_Mutation p.N439D 0.30 deleterious(0) probably_damaging(0.977) TCGA-BR-8680-01 4 73927616 73927616 C A COX18 Nonsense_Mutation p.G248* 0.42 TCGA-BR-8680-01 4 73956680 73956680 G A ANKRD17 Missense_Mutation p.S2222L 0.27 possibly_damaging(0.6) TCGA-BR-8680-01 4 73979536 73979536 A C ANKRD17 Missense_Mutation p.I1458M 0.29 possibly_damaging(0.901) TCGA-BR-8680-01 4 74283258 74283258 C T ALB Missense_Mutation p.R434C 0.34 deleterious(0.03) benign(0.388) TCGA-BR-8680-01 4 74285345 74285345 T G ALB Missense_Mutation p.F592V 0.32 deleterious(0) probably_damaging(0.995) TCGA-BR-8680-01 4 7436430 7436430 C T PSAPL1 Silent p.A59A 0.31 TCGA-BR-8680-01 4 74447980 74447980 A G RASSF6 Missense_Mutation p.S231P 0.34 deleterious(0) probably_damaging(0.974) TCGA-BR-8680-01 4 74477513 74477513 C A RASSF6 Missense_Mutation p.K32N 0.32 tolerated_low_confidence(0.05) benign(0.243) TCGA-BR-8680-01 4 76419368 76419368 A C RCHY1 Missense_Mutation p.F116L 0.30 deleterious(0) benign(0.129) TCGA-BR-8680-01 4 76489736 76489736 G A C4orf26 Missense_Mutation p.R175Q 0.29 tolerated_low_confidence(0.37) unknown(0) TCGA-BR-8680-01 4 76521479 76521479 C T CDKL2 Silent p.P456P 0.28 TCGA-BR-8680-01 4 76570777 76570777 C T G3BP2 Missense_Mutation p.R429H 0.27 tolerated_low_confidence(0.1) possibly_damaging(0.66) TCGA-BR-8680-01 4 76715020 76715020 C A USO1 Missense_Mutation p.S475Y 0.28 deleterious(0) probably_damaging(0.978) TCGA-BR-8680-01 4 76805796 76805796 C A PPEF2 Nonsense_Mutation p.E233* 0.35 TCGA-BR-8680-01 4 76811283 76811283 C T PPEF2 Missense_Mutation p.D82N 0.32 tolerated(0.56) benign(0.023) TCGA-BR-8680-01 4 76871819 76871819 T C SDAD1 3'UTR 0.27 TCGA-BR-8680-01 4 7705057 7705057 C T SORCS2 Silent p.I573I 0.31 TCGA-BR-8680-01 4 7706006 7706006 C A SORCS2 Silent p.V621V 0.18 TCGA-BR-8680-01 4 77252554 77252554 C T CCDC158 Missense_Mutation p.S958N 0.28 tolerated(0.47) benign(0.003) TCGA-BR-8680-01 4 77660178 77660179 - T SHROOM3 Frame_Shift_Ins p.S285Ffs*28 0.25 TCGA-BR-8680-01 4 77700059 77700059 G A SHROOM3 Missense_Mutation p.G1907D 0.41 tolerated(1) benign(0.002) TCGA-BR-8680-01 4 79236761 79236761 C T FRAS1 Silent p.S564S 0.36 TCGA-BR-8680-01 4 79400712 79400712 C T FRAS1 Silent p.S2761S 0.27 TCGA-BR-8680-01 4 79458157 79458157 C A FRAS1 Missense_Mutation p.L3701I 0.27 possibly_damaging(0.677) TCGA-BR-8680-01 4 79845039 79845039 A C PAQR3 Missense_Mutation p.I255M 0.27 tolerated(0.1) benign(0.098) TCGA-BR-8680-01 4 80328097 80328097 G A GK2 Missense_Mutation p.R420C 0.33 deleterious(0.01) possibly_damaging(0.631) TCGA-BR-8680-01 4 80977160 80977160 T G ANTXR2 Missense_Mutation p.I102L 0.73 deleterious(0.02) benign(0.073) TCGA-BR-8680-01 4 81124520 81124520 G A PRDM8 Missense_Mutation p.R635H 0.46 deleterious(0) possibly_damaging(0.452) TCGA-BR-8680-01 4 81124564 81124564 A C PRDM8 Missense_Mutation p.K650Q 0.41 deleterious(0) possibly_damaging(0.639) TCGA-BR-8680-01 4 81967324 81967324 C A BMP3 Missense_Mutation p.S250Y 0.36 deleterious(0) probably_damaging(0.954) TCGA-BR-8680-01 4 81974618 81974618 C A BMP3 Missense_Mutation p.F449L 0.25 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 4 8214461 8214461 A C SH3TC1 Missense_Mutation p.K94T 0.49 deleterious(0.04) possibly_damaging(0.57) TCGA-BR-8680-01 4 82362046 82362046 C T RASGEF1B Missense_Mutation p.R349Q 0.29 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 4 8305989 8305989 G A HTRA3 Silent p.P393P 0.37 TCGA-BR-8680-01 4 83425759 83425759 A C TMEM150C Missense_Mutation p.L18V 0.36 tolerated(1) benign(0.002) TCGA-BR-8680-01 4 83602054 83602054 G A SCD5 Silent p.F125F 0.38 TCGA-BR-8680-01 4 83765454 83765454 A G SEC31A Intron 0.36 TCGA-BR-8680-01 4 83770112 83770112 G A SEC31A Missense_Mutation p.R783C 0.09 deleterious(0) probably_damaging(0.993) TCGA-BR-8680-01 4 83787987 83787987 G A SEC31A Nonsense_Mutation p.R391* 0.31 TCGA-BR-8680-01 4 83840004 83840004 A C THAP9 Missense_Mutation p.K880T 0.43 tolerated_low_confidence(0.14) benign(0) TCGA-BR-8680-01 4 83840109 83840109 G T THAP9 3'UTR 0.42 TCGA-BR-8680-01 4 83996711 83996711 G T COPS4 3'UTR 0.20 TCGA-BR-8680-01 4 85605098 85605098 G A WDFY3 Missense_Mutation p.R3242W 0.27 deleterious(0) probably_damaging(0.995) TCGA-BR-8680-01 4 85696261 85696261 G T WDFY3 Missense_Mutation p.L1517I 0.51 tolerated(0.05) possibly_damaging(0.542) TCGA-BR-8680-01 4 85731148 85731148 C A WDFY3 Missense_Mutation p.R746I 0.32 deleterious(0.05) benign(0.014) TCGA-BR-8680-01 4 8583065 8583065 G A GPR78 Missense_Mutation p.R119Q 0.47 deleterious(0.02) probably_damaging(0.99) TCGA-BR-8680-01 4 8589021 8589021 G A GPR78 Silent p.P341P 0.30 TCGA-BR-8680-01 4 87024399 87024399 T G MAPK10 Splice_Site p.X123_splice 0.31 TCGA-BR-8680-01 4 87622475 87622475 A C PTPN13 Missense_Mutation p.K239T 0.39 deleterious(0) probably_damaging(0.987) TCGA-BR-8680-01 4 87637691 87637691 C T PTPN13 Nonsense_Mutation p.R402* 0.55 TCGA-BR-8680-01 4 87744921 87744921 C T SLC10A6 Missense_Mutation p.A352T 0.28 tolerated(0.56) benign(0.003) TCGA-BR-8680-01 4 88533280 88533280 G A DSPP Silent p.E25E 0.33 TCGA-BR-8680-01 4 88533818 88533818 G T DSPP Missense_Mutation p.K160N 0.38 benign(0.198) TCGA-BR-8680-01 4 88732678 88732678 C T IBSP Silent p.N190N 0.37 TCGA-BR-8680-01 4 88767192 88767192 C T MEPE Missense_Mutation p.A391V 0.20 tolerated(0.07) benign(0.03) TCGA-BR-8680-01 4 891937 891937 A C GAK Missense_Mutation p.L179V 0.41 deleterious(0) possibly_damaging(0.841) TCGA-BR-8680-01 4 89198321 89198321 G A PPM1K Missense_Mutation p.S172L 0.44 tolerated(0.28) benign(0.002) TCGA-BR-8680-01 4 89311819 89311819 C T HERC6 Missense_Mutation p.S151L 0.49 deleterious(0) probably_damaging(0.941) TCGA-BR-8680-01 4 89380566 89380566 C A HERC5 Missense_Mutation p.L112I 0.30 tolerated(0.17) probably_damaging(0.994) TCGA-BR-8680-01 4 89390312 89390312 C A HERC5 Nonsense_Mutation p.S380* 0.24 TCGA-BR-8680-01 4 89442674 89442674 C T PYURF 3'UTR 0.29 TCGA-BR-8680-01 4 89658668 89658668 C G FAM13A Missense_Mutation p.Q867H 0.35 deleterious(0) probably_damaging(0.99) TCGA-BR-8680-01 4 89709072 89709072 C A FAM13A Missense_Mutation p.R368I 0.30 deleterious(0) possibly_damaging(0.864) TCGA-BR-8680-01 4 90856259 90856259 G A MMRN1 Silent p.K476K 0.43 TCGA-BR-8680-01 4 90856603 90856603 A G MMRN1 Missense_Mutation p.E591G 0.31 tolerated(0.11) possibly_damaging(0.884) TCGA-BR-8680-01 4 90856704 90856704 C A MMRN1 Missense_Mutation p.L625I 0.29 tolerated(0.48) benign(0.009) TCGA-BR-8680-01 4 91230341 91230341 T G CCSER1 Silent p.A302A 0.31 TCGA-BR-8680-01 4 94411866 94411866 C A GRID2 Silent p.I645I 0.38 TCGA-BR-8680-01 4 95191964 95191964 G T SMARCAD1 Nonsense_Mutation p.E523* 0.28 TCGA-BR-8680-01 4 96090332 96090332 G T UNC5C 3'UTR 0.25 TCGA-BR-8680-01 4 99313106 99313106 C T RAP1GDS1 Missense_Mutation p.S172L 0.17 tolerated(0.34) benign(0.01) TCGA-BR-8680-01 4 99399882 99399882 C T TSPAN5 Missense_Mutation p.R177Q 0.34 deleterious(0.01) possibly_damaging(0.679) TCGA-BR-8680-01 4 99808251 99808251 G A EIF4E Silent p.L126L 0.37 TCGA-BR-8680-01 4 99993587 99993587 C T ADH5 Missense_Mutation p.R369Q 0.27 deleterious(0.02) benign(0.135) TCGA-BR-8680-01 5 101592925 101592925 T C SLCO4C1 Missense_Mutation p.K455E 0.25 deleterious(0) probably_damaging(0.911) TCGA-BR-8680-01 5 101735385 101735385 A C SLCO6A1 Missense_Mutation p.F563C 0.28 deleterious(0) probably_damaging(0.995) TCGA-BR-8680-01 5 101795417 101795417 C T SLCO6A1 Missense_Mutation p.A322T 0.29 tolerated(0.45) benign(0.034) TCGA-BR-8680-01 5 102895125 102895125 T C NUDT12 Missense_Mutation p.D84G 0.40 deleterious(0.05) possibly_damaging(0.895) TCGA-BR-8680-01 5 107216831 107216831 G A FBXL17 Silent p.V624V 0.34 TCGA-BR-8680-01 5 108203635 108203635 G T FER Nonsense_Mutation p.E217* 0.28 TCGA-BR-8680-01 5 109155379 109155379 C T MAN2A1 Nonsense_Mutation p.R707* 0.29 TCGA-BR-8680-01 5 109183456 109183456 C T MAN2A1 Nonsense_Mutation p.R981* 0.38 TCGA-BR-8680-01 5 110445966 110445966 T C WDR36 Missense_Mutation p.S525P 0.12 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 5 11082831 11082831 T C CTNND2 Missense_Mutation p.D922G 0.28 deleterious(0.02) probably_damaging(1) TCGA-BR-8680-01 5 111754705 111754705 A C EPB41L4A Missense_Mutation p.F11C 0.46 deleterious(0.01) probably_damaging(0.998) TCGA-BR-8680-01 5 112151261 112151261 C T APC Nonsense_Mutation p.R302* 0.26 TCGA-BR-8680-01 5 112173621 112173621 A G APC Missense_Mutation p.D777G 0.38 possibly_damaging(0.532) TCGA-BR-8680-01 5 112174393 112174393 G A APC Silent p.E1034E 0.42 TCGA-BR-8680-01 5 112174916 112174916 G T APC Nonsense_Mutation p.E1209* 0.40 TCGA-BR-8680-01 5 112175639 112175639 C T APC Nonsense_Mutation p.R1450* 0.35 TCGA-BR-8680-01 5 112177901 112177901 C T APC Nonsense_Mutation p.R2204* 0.31 TCGA-BR-8680-01 5 112222851 112222851 C T REEP5 Silent p.P127P 0.21 TCGA-BR-8680-01 5 112321534 112321534 G A DCP2 Missense_Mutation p.R19Q 0.31 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 5 112770308 112770308 C T TSSK1B Missense_Mutation p.E77K 0.31 deleterious(0) possibly_damaging(0.846) TCGA-BR-8680-01 5 112862484 112862484 T C YTHDC2 Splice_Site p.X225_splice 0.35 TCGA-BR-8680-01 5 112896785 112896785 G A YTHDC2 Missense_Mutation p.R742Q 0.45 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 5 115298524 115298524 G A AQPEP Silent p.P70P 0.24 TCGA-BR-8680-01 5 118485264 118485264 G T DMXL1 Nonsense_Mutation p.E1248* 0.36 TCGA-BR-8680-01 5 118503325 118503325 C A DMXL1 Missense_Mutation p.Q1722K 0.27 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 5 118582939 118582939 T G DMXL1 3'UTR 0.56 TCGA-BR-8680-01 5 118861613 118861613 T C HSD17B4 Silent p.G550G 0.30 TCGA-BR-8680-01 5 119800232 119800232 A G PRR16 5'UTR 0.27 TCGA-BR-8680-01 5 121759111 121759111 G A SNCAIP Missense_Mutation p.D227N 0.33 deleterious(0.01) possibly_damaging(0.471) TCGA-BR-8680-01 5 122137575 122137575 A C SNX2 Missense_Mutation p.E134D 0.29 tolerated(0.13) benign(0.038) TCGA-BR-8680-01 5 122724294 122724294 G T CEP120 Missense_Mutation p.S421Y 0.37 deleterious(0.02) benign(0.229) TCGA-BR-8680-01 5 122729052 122729052 C T CEP120 Missense_Mutation p.R251H 0.29 deleterious(0) probably_damaging(0.992) TCGA-BR-8680-01 5 124080003 124080003 C T ZNF608 Missense_Mutation p.S227N 0.30 tolerated(0.4) benign(0.047) TCGA-BR-8680-01 5 125819236 125819236 T G GRAMD3 Missense_Mutation p.S288A 0.35 deleterious(0) probably_damaging(0.997) TCGA-BR-8680-01 5 126791103 126791103 G T MEGF10 Missense_Mutation p.K1012N 0.30 deleterious(0.04) probably_damaging(0.995) TCGA-BR-8680-01 5 1272354 1272354 G A TERT Silent p.F776F 0.28 TCGA-BR-8680-01 5 127615904 127615904 G T FBN2 Missense_Mutation p.S2373Y 0.30 tolerated(0.11) possibly_damaging(0.861) TCGA-BR-8680-01 5 127641543 127641543 A C FBN2 Missense_Mutation p.S1840R 0.39 tolerated(0.56) benign(0.034) TCGA-BR-8680-01 5 127648405 127648405 G A FBN2 Silent p.G1600G 0.33 TCGA-BR-8680-01 5 127782261 127782261 C A FBN2 Nonsense_Mutation p.G289* 0.30 TCGA-BR-8680-01 5 128302039 128302039 A C SLC27A6 Missense_Mutation p.K70T 0.38 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 5 128362977 128362977 T G SLC27A6 Missense_Mutation p.D469E 0.35 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 5 129520286 129520286 G A CHSY3 Missense_Mutation p.R484Q 0.32 deleterious(0.01) possibly_damaging(0.727) TCGA-BR-8680-01 5 130940376 130940376 G T RAPGEF6 Missense_Mutation p.T27N 0.32 tolerated(0.13) benign(0.375) TCGA-BR-8680-01 5 131298258 131298258 C T ACSL6 Silent p.A609A 0.34 TCGA-BR-8680-01 5 131321104 131321104 C T ACSL6 Silent p.T304T 0.33 TCGA-BR-8680-01 5 131822766 131822766 G A IRF1 Missense_Mutation p.R82C 0.33 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 5 132009824 132009824 G A IL4 Missense_Mutation p.D28N 0.40 tolerated(0.93) benign(0.004) TCGA-BR-8680-01 5 132034929 132034929 T G KIF3A Missense_Mutation p.Q662P 0.36 tolerated(0.28) benign(0.062) TCGA-BR-8680-01 5 132216807 132216807 G A AFF4 Missense_Mutation p.R1146C 0.37 deleterious(0) possibly_damaging(0.88) TCGA-BR-8680-01 5 1334416 1334416 G A CLPTM1L Silent p.V293V 0.27 TCGA-BR-8680-01 5 133871564 133871564 G A JADE2 Missense_Mutation p.R6Q 0.31 tolerated(0.07) probably_damaging(0.994) TCGA-BR-8680-01 5 133909341 133909341 A C JADE2 Missense_Mutation p.N481H 0.17 deleterious(0) possibly_damaging(0.907) TCGA-BR-8680-01 5 133944178 133944178 C A SAR1B Nonsense_Mutation p.E122* 0.24 TCGA-BR-8680-01 5 134086512 134086512 G A CAMLG Missense_Mutation p.E255K 0.27 deleterious(0) probably_damaging(0.994) TCGA-BR-8680-01 5 134190891 134190891 G A C5orf24 Missense_Mutation p.G101R 0.31 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 5 135382148 135382148 C T TGFBI Silent p.F141F 0.21 TCGA-BR-8680-01 5 135567128 135567128 G T TRPC7 Missense_Mutation p.L652I 0.33 deleterious(0) probably_damaging(0.997) TCGA-BR-8680-01 5 135693035 135693035 T C TRPC7 Missense_Mutation p.H14R 0.33 tolerated_low_confidence(0.15) benign(0.002) TCGA-BR-8680-01 5 13708403 13708403 C A DNAH5 Missense_Mutation p.M4389I 0.38 benign(0.072) TCGA-BR-8680-01 5 137206353 137206353 G A MYOT Missense_Mutation p.E5K 0.34 deleterious(0) possibly_damaging(0.866) TCGA-BR-8680-01 5 137217750 137217750 A C MYOT Missense_Mutation p.N258H 0.31 deleterious(0.01) possibly_damaging(0.797) TCGA-BR-8680-01 5 137223133 137223133 T C MYOT 3'UTR 0.44 TCGA-BR-8680-01 5 137241990 137241990 T C PKD2L2 Missense_Mutation p.F281S 0.38 deleterious(0) probably_damaging(0.952) TCGA-BR-8680-01 5 137242046 137242046 G A PKD2L2 Missense_Mutation p.E300K 0.27 deleterious(0.01) possibly_damaging(0.873) TCGA-BR-8680-01 5 137275746 137275746 C T FAM13B 3'UTR 0.27 TCGA-BR-8680-01 5 137284799 137284799 A C FAM13B Missense_Mutation p.F647V 0.31 deleterious(0) probably_damaging(0.997) TCGA-BR-8680-01 5 137518869 137518869 C T KIF20A Nonsense_Mutation p.R282* 0.33 TCGA-BR-8680-01 5 13753355 13753355 C T DNAH5 Missense_Mutation p.R3620Q 0.62 possibly_damaging(0.553) TCGA-BR-8680-01 5 137589038 137589038 A C GFRA3 Missense_Mutation p.F351V 0.19 tolerated(0.2) benign(0.018) TCGA-BR-8680-01 5 137627783 137627783 C T CDC25C Missense_Mutation p.R213H 0.32 deleterious(0.02) benign(0.038) TCGA-BR-8680-01 5 13762932 13762932 C T DNAH5 Missense_Mutation p.E3394K 0.24 possibly_damaging(0.635) TCGA-BR-8680-01 5 13769652 13769652 C T DNAH5 Silent p.A3226A 0.32 TCGA-BR-8680-01 5 13769697 13769697 T G DNAH5 Missense_Mutation p.K3211N 0.32 possibly_damaging(0.728) TCGA-BR-8680-01 5 137715275 137715275 C T KDM3B Missense_Mutation p.P195S 0.35 tolerated(0.57) benign(0.328) TCGA-BR-8680-01 5 137771343 137771343 C T KDM3B Missense_Mutation p.A1747V 0.21 deleterious(0.03) possibly_damaging(0.617) TCGA-BR-8680-01 5 137844015 137844015 A C ETF1 Missense_Mutation p.F431L 0.26 tolerated(0.29) benign(0) TCGA-BR-8680-01 5 137892159 137892159 G A HSPA9 Silent p.F648F 0.32 TCGA-BR-8680-01 5 13811916 13811916 C T DNAH5 Missense_Mutation p.R2416H 0.26 possibly_damaging(0.522) TCGA-BR-8680-01 5 138160307 138160307 A G CTNNA1 Missense_Mutation p.Q226R 0.29 tolerated(0.38) benign(0.001) TCGA-BR-8680-01 5 138160426 138160426 G A CTNNA1 Missense_Mutation p.D266N 0.34 tolerated(0.35) benign(0.006) TCGA-BR-8680-01 5 138208713 138208713 C A LRRTM2 Nonsense_Mutation p.E513* 0.34 TCGA-BR-8680-01 5 138386648 138386648 C T SIL1 Missense_Mutation p.R111Q 0.31 tolerated(0.32) benign(0.001) TCGA-BR-8680-01 5 13850896 13850896 T G DNAH5 Missense_Mutation p.K1660T 0.33 possibly_damaging(0.728) TCGA-BR-8680-01 5 13865867 13865867 A G DNAH5 Missense_Mutation p.V1422A 0.37 benign(0.034) TCGA-BR-8680-01 5 138715727 138715727 C T SLC23A1 Missense_Mutation p.R233H 0.19 deleterious(0.02) benign(0.43) TCGA-BR-8680-01 5 13914039 13914039 T G DNAH5 Missense_Mutation p.K450T 0.25 possibly_damaging(0.728) TCGA-BR-8680-01 5 139216473 139216473 G A PSD2 Missense_Mutation p.R494Q 0.29 deleterious(0.03) possibly_damaging(0.871) TCGA-BR-8680-01 5 139217339 139217339 G A PSD2 Missense_Mutation p.D599N 0.26 deleterious(0) probably_damaging(0.987) TCGA-BR-8680-01 5 139231256 139231256 G A NRG2 Missense_Mutation p.R569C 0.29 deleterious(0.02) benign(0.075) TCGA-BR-8680-01 5 139231356 139231356 C A NRG2 Silent p.S535S 0.27 TCGA-BR-8680-01 5 13923469 13923469 C T DNAH5 Missense_Mutation p.D120N 0.29 possibly_damaging(0.555) TCGA-BR-8680-01 5 140022539 140022539 A G TMCO6 Missense_Mutation p.H240R 0.26 deleterious(0.05) benign(0.009) TCGA-BR-8680-01 5 140023501 140023501 A G TMCO6 Missense_Mutation p.K352R 0.20 tolerated(0.18) benign(0.234) TCGA-BR-8680-01 5 140047890 140047890 G A WDR55 Missense_Mutation p.R88Q 0.34 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 5 140077629 140077629 T C HARS2 Missense_Mutation p.V476A 0.39 tolerated(0.1) benign(0.089) TCGA-BR-8680-01 5 140166397 140166397 G A PCDHA1 Silent p.P174P 0.11 TCGA-BR-8680-01 5 140174848 140174848 C T PCDHA2 Missense_Mutation p.A100V 0.32 tolerated_low_confidence(0.15) benign(0.107) TCGA-BR-8680-01 5 140183184 140183184 A C PCDHA3 Intron 0.25 TCGA-BR-8680-01 5 140186733 140186733 G T PCDHA4 5'Flank 0.34 TCGA-BR-8680-01 5 140187116 140187116 A C PCDHA4 Missense_Mutation p.Q115P 0.43 deleterious_low_confidence(0) possibly_damaging(0.883) TCGA-BR-8680-01 5 140187186 140187186 G T PCDHA4 Missense_Mutation p.K138N 0.29 deleterious_low_confidence(0) benign(0.367) TCGA-BR-8680-01 5 140208802 140208802 G A PCDHA6 Missense_Mutation p.D376N 0.25 deleterious_low_confidence(0.01) probably_damaging(0.99) TCGA-BR-8680-01 5 140214350 140214350 G A PCDHA7 Missense_Mutation p.D128N 0.38 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-BR-8680-01 5 140221499 140221499 A C PCDHA8 Missense_Mutation p.K198T 0.08 deleterious_low_confidence(0.05) possibly_damaging(0.526) TCGA-BR-8680-01 5 140228097 140228097 G A PCDHA9 Missense_Mutation p.R6Q 0.40 tolerated_low_confidence(0.17) benign(0.003) TCGA-BR-8680-01 5 140249484 140249484 G A PCDHA11 Missense_Mutation p.A266T 0.30 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BR-8680-01 5 140255526 140255526 G A PCDHA12 Missense_Mutation p.A157T 0.41 deleterious_low_confidence(0) probably_damaging(1) TCGA-BR-8680-01 5 140307492 140307492 G A PCDHAC1 Missense_Mutation p.E339K 0.36 deleterious(0) possibly_damaging(0.492) TCGA-BR-8680-01 5 140307515 140307515 G A PCDHAC1 Silent p.S346S 0.27 TCGA-BR-8680-01 5 140308872 140308872 C T PCDHAC1 Missense_Mutation p.R799W 0.31 tolerated(0.24) benign(0.004) TCGA-BR-8680-01 5 140431993 140431993 A C PCDHB1 Missense_Mutation p.E313A 0.41 tolerated(0.05) probably_damaging(0.998) TCGA-BR-8680-01 5 140432001 140432001 G A PCDHB1 Missense_Mutation p.D316N 0.41 tolerated(0.19) probably_damaging(0.999) TCGA-BR-8680-01 5 140432773 140432773 G A PCDHB1 Missense_Mutation p.C573Y 0.25 tolerated(0.08) benign(0.008) TCGA-BR-8680-01 5 140432871 140432871 C A PCDHB1 Missense_Mutation p.H606N 0.34 deleterious(0) benign(0.122) TCGA-BR-8680-01 5 140432958 140432958 G T PCDHB1 Missense_Mutation p.D635Y 0.31 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 5 140481185 140481185 G A PCDHB3 Missense_Mutation p.D318N 0.39 tolerated_low_confidence(0.81) benign(0.001) TCGA-BR-8680-01 5 140482283 140482283 G A PCDHB3 Missense_Mutation p.D684N 0.31 deleterious_low_confidence(0.04) benign(0.15) TCGA-BR-8680-01 5 140502262 140502262 C T PCDHB4 Nonsense_Mutation p.R228* 0.39 TCGA-BR-8680-01 5 140515899 140515899 G A PCDHB5 Missense_Mutation p.E295K 0.32 tolerated_low_confidence(0.12) benign(0.001) TCGA-BR-8680-01 5 140529924 140529924 C T PCDHB6 Missense_Mutation p.S29L 0.27 tolerated(0.59) benign(0.018) TCGA-BR-8680-01 5 140530736 140530736 C T PCDHB6 Missense_Mutation p.R300W 0.33 deleterious(0.01) possibly_damaging(0.75) TCGA-BR-8680-01 5 140552652 140552652 C T PCDHB7 Missense_Mutation p.S79L 0.33 tolerated_low_confidence(0.7) benign(0.005) TCGA-BR-8680-01 5 140553101 140553101 C T PCDHB7 Missense_Mutation p.R229C 0.30 deleterious_low_confidence(0.03) benign(0.04) TCGA-BR-8680-01 5 140553637 140553637 A C PCDHB7 Missense_Mutation p.K407N 0.40 tolerated_low_confidence(0.08) benign(0.001) TCGA-BR-8680-01 5 140557991 140557991 G A PCDHB8 Missense_Mutation p.D126N 0.19 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-BR-8680-01 5 140558153 140558153 C T PCDHB8 Missense_Mutation p.R180W 0.24 deleterious_low_confidence(0) possibly_damaging(0.552) TCGA-BR-8680-01 5 140559338 140559338 G A PCDHB8 Missense_Mutation p.E575K 0.18 deleterious_low_confidence(0) probably_damaging(0.924) TCGA-BR-8680-01 5 140559922 140559922 A G PCDHB8 Silent p.K769K 0.26 TCGA-BR-8680-01 5 140573028 140573028 C A PCDHB10 Silent p.I301I 0.35 TCGA-BR-8680-01 5 140579519 140579519 G T PCDHB11 Nonsense_Mutation p.E58* 0.34 TCGA-BR-8680-01 5 140581471 140581471 C T PCDHB11 Silent p.F708F 0.26 TCGA-BR-8680-01 5 140581771 140581771 T G PCDHB11 3'UTR 0.35 TCGA-BR-8680-01 5 140594772 140594772 G A PCDHB13 Silent p.E359E 0.34 TCGA-BR-8680-01 5 140605445 140605445 C T PCDHB14 Nonsense_Mutation p.R790* 0.33 TCGA-BR-8680-01 5 140615714 140615714 C T PCDHB18 RNA 0.37 TCGA-BR-8680-01 5 140625165 140625165 C T PCDHB15 Missense_Mutation p.R7C 0.31 tolerated_low_confidence(0.14) benign(0.011) TCGA-BR-8680-01 5 140625274 140625274 C A PCDHB15 Missense_Mutation p.S43Y 0.26 tolerated_low_confidence(0.17) benign(0.171) TCGA-BR-8680-01 5 140625481 140625481 A C PCDHB15 Missense_Mutation p.K112T 0.36 deleterious_low_confidence(0.05) benign(0.073) TCGA-BR-8680-01 5 140627444 140627444 C A PCDHB15 Missense_Mutation p.F766L 0.43 deleterious_low_confidence(0.02) benign(0.354) TCGA-BR-8680-01 5 140682859 140682859 C A SLC25A2 Nonsense_Mutation p.E192* 0.32 TCGA-BR-8680-01 5 140710513 140710513 C T PCDHGA1 Missense_Mutation p.R88C 0.32 deleterious_low_confidence(0) benign(0.113) TCGA-BR-8680-01 5 140711198 140711198 C A PCDHGA1 Nonsense_Mutation p.S316* 0.35 TCGA-BR-8680-01 5 140712719 140712719 C A PCDHGA1 Intron 0.49 TCGA-BR-8680-01 5 140730274 140730274 C A PCDHGB1 Missense_Mutation p.F149L 0.34 tolerated(0.05) probably_damaging(0.999) TCGA-BR-8680-01 5 140730670 140730670 C A PCDHGB1 Silent p.S281S 0.24 TCGA-BR-8680-01 5 140731944 140731944 C T PCDHGB1 Missense_Mutation p.A706V 0.36 tolerated(0.34) benign(0.096) TCGA-BR-8680-01 5 140734861 140734861 C A PCDHGA4 Missense_Mutation p.L32I 0.28 deleterious_low_confidence(0.01) benign(0.144) TCGA-BR-8680-01 5 140740020 140740020 C T PCDHGB2 Silent p.F106F 0.31 TCGA-BR-8680-01 5 140750426 140750426 A G PCDHGB3 Silent p.E155E 0.31 TCGA-BR-8680-01 5 140751953 140751953 C T PCDHGB3 Silent p.F664F 0.32 TCGA-BR-8680-01 5 140752194 140752194 G A PCDHGB3 Missense_Mutation p.E745K 0.40 deleterious(0.02) benign(0.295) TCGA-BR-8680-01 5 140764273 140764273 T G PCDHGA7 Missense_Mutation p.W603G 0.22 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-BR-8680-01 5 140764319 140764319 C T PCDHGA7 Missense_Mutation p.A618V 0.18 tolerated_low_confidence(0.21) benign(0.014) TCGA-BR-8680-01 5 140769585 140769585 C T PCDHGB4 Missense_Mutation p.R712C 0.32 tolerated(0.08) benign(0.058) TCGA-BR-8680-01 5 140769650 140769650 C T PCDHGB4 Silent p.S733S 0.35 TCGA-BR-8680-01 5 140772850 140772850 C T PCDHGA8 Missense_Mutation p.A157V 0.29 tolerated_low_confidence(0.07) probably_damaging(0.919) TCGA-BR-8680-01 5 140773459 140773459 C A PCDHGA8 Missense_Mutation p.S360Y 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.908) TCGA-BR-8680-01 5 140788389 140788389 C A PCDHGB6 Missense_Mutation p.S207Y 0.30 tolerated(1) benign(0.033) TCGA-BR-8680-01 5 140788952 140788952 T C PCDHGB6 Missense_Mutation p.Y395H 0.30 tolerated(0.58) benign(0.002) TCGA-BR-8680-01 5 140789915 140789915 C T PCDHGB6 Nonsense_Mutation p.R716* 0.33 TCGA-BR-8680-01 5 140793736 140793736 C A PCDHGA10 Missense_Mutation p.L332I 0.20 tolerated_low_confidence(0.07) benign(0.063) TCGA-BR-8680-01 5 140794687 140794687 G T PCDHGA10 Missense_Mutation p.A649S 0.33 tolerated_low_confidence(0.09) benign(0.133) TCGA-BR-8680-01 5 140801986 140801986 A G PCDHGA11 Missense_Mutation p.T398A 0.33 deleterious_low_confidence(0.01) benign(0.183) TCGA-BR-8680-01 5 140802023 140802023 T C PCDHGA11 Missense_Mutation p.V410A 0.31 tolerated_low_confidence(1) benign(0.007) TCGA-BR-8680-01 5 140802987 140802987 C T PCDHGA11 Silent p.G731G 0.22 TCGA-BR-8680-01 5 140807610 140807610 A G PCDHGB6 Intron 0.26 TCGA-BR-8680-01 5 140811351 140811351 A G PCDHGA12 Missense_Mutation p.D342G 0.36 deleterious_low_confidence(0) possibly_damaging(0.889) TCGA-BR-8680-01 5 140812460 140812460 C T PCDHGA12 Silent p.L712L 0.38 TCGA-BR-8680-01 5 140865298 140865298 C T PCDHGC4 Silent p.S186S 0.33 TCGA-BR-8680-01 5 140866394 140866394 C T PCDHGC4 Missense_Mutation p.R552C 0.34 deleterious(0) probably_damaging(0.964) TCGA-BR-8680-01 5 140951552 140951552 C T DIAPH1 Missense_Mutation p.R805H 0.34 possibly_damaging(0.49) TCGA-BR-8680-01 5 141019684 141019684 G T RELL2 Missense_Mutation p.S234I 0.32 deleterious_low_confidence(0.01) benign(0.107) TCGA-BR-8680-01 5 141244951 141244951 G A PCDH1 Silent p.I315I 0.32 TCGA-BR-8680-01 5 141335704 141335704 G A PCDH12 Silent p.S571S 0.37 TCGA-BR-8680-01 5 141336702 141336702 C A PCDH12 Missense_Mutation p.D239Y 0.28 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 5 141337067 141337067 G A PCDH12 Missense_Mutation p.A117V 0.37 tolerated(0.14) benign(0.111) TCGA-BR-8680-01 5 142780030 142780030 G A NR3C1 Silent p.S125S 0.31 TCGA-BR-8680-01 5 143586725 143586725 A C KCTD16 Missense_Mutation p.I150L 0.29 tolerated(0.94) benign(0) TCGA-BR-8680-01 5 14462881 14462881 C T TRIO Silent p.G1838G 0.26 TCGA-BR-8680-01 5 145503552 145503552 G A LARS Missense_Mutation p.S1030L 0.31 deleterious(0.02) benign(0.009) TCGA-BR-8680-01 5 145886637 145886637 G A TCERG1 Missense_Mutation p.R926Q 0.36 deleterious(0) unknown(0) TCGA-BR-8680-01 5 146070775 146070775 G A PPP2R2B Silent p.S124S 0.42 TCGA-BR-8680-01 5 146778797 146778797 C T DPYSL3 Missense_Mutation p.E491K 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8680-01 5 147020340 147020340 T G JAKMIP2 Missense_Mutation p.D443A 0.47 deleterious(0.01) benign(0.197) TCGA-BR-8680-01 5 147051442 147051442 T G JAKMIP2 5'UTR 0.39 TCGA-BR-8680-01 5 1474721 1474721 C T LPCAT1 Missense_Mutation p.A327T 0.45 tolerated(0.25) benign(0.029) TCGA-BR-8680-01 5 147803583 147803583 C T FBXO38 Silent p.I547I 0.28 TCGA-BR-8680-01 5 147902810 147902810 A G HTR4 Silent p.F151F 0.31 TCGA-BR-8680-01 5 148406848 148406848 A G SH3TC2 Missense_Mutation p.L816S 0.33 tolerated(0.74) benign(0.15) TCGA-BR-8680-01 5 148679892 148679892 C T AFAP1L1 Silent p.F68F 0.39 TCGA-BR-8680-01 5 148687128 148687128 C T AFAP1L1 Silent p.F233F 0.26 TCGA-BR-8680-01 5 148699965 148699965 C T AFAP1L1 Missense_Mutation p.S546F 0.28 deleterious(0) probably_damaging(0.928) TCGA-BR-8680-01 5 148746955 148746955 C T PCYOX1L Silent p.L239L 0.27 TCGA-BR-8680-01 5 149324052 149324052 A C PDE6A Missense_Mutation p.F62C 0.40 deleterious(0) possibly_damaging(0.72) TCGA-BR-8680-01 5 149607839 149607839 C T CAMK2A Missense_Mutation p.D385N 0.38 deleterious_low_confidence(0.03) benign(0.113) TCGA-BR-8680-01 5 150133162 150133162 C T DCTN4 Silent p.T88T 0.29 TCGA-BR-8680-01 5 150418747 150418747 G A TNIP1 Missense_Mutation p.R392C 0.44 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 5 150704958 150704958 G T SLC36A2 Missense_Mutation p.S300Y 0.24 tolerated(1) benign(0.002) TCGA-BR-8680-01 5 150838484 150838484 G T SLC36A1 Missense_Mutation p.S44I 0.34 tolerated(0.06) benign(0.015) TCGA-BR-8680-01 5 150924751 150924751 C T FAT2 Silent p.E1979E 0.36 TCGA-BR-8680-01 5 150930303 150930303 C T FAT2 Missense_Mutation p.D1476N 0.29 probably_damaging(1) TCGA-BR-8680-01 5 150946848 150946848 A G FAT2 Missense_Mutation p.S549P 0.36 benign(0.012) TCGA-BR-8680-01 5 150948206 150948206 C A FAT2 Missense_Mutation p.R96I 0.35 probably_damaging(0.999) TCGA-BR-8680-01 5 151208496 151208496 G A GLRA1 Missense_Mutation p.R349W 0.36 deleterious(0) possibly_damaging(0.773) TCGA-BR-8680-01 5 153406049 153406049 C A FAM114A2 Nonsense_Mutation p.E275* 0.30 TCGA-BR-8680-01 5 153433351 153433351 T G MFAP3 3'UTR 0.13 TCGA-BR-8680-01 5 154181870 154181870 G A LARP1 Missense_Mutation p.E597K 0.37 deleterious(0) probably_damaging(0.997) TCGA-BR-8680-01 5 154182861 154182861 G T LARP1 Missense_Mutation p.E630D 0.35 deleterious(0.04) possibly_damaging(0.466) TCGA-BR-8680-01 5 154183768 154183768 G A LARP1 Missense_Mutation p.R739Q 0.10 deleterious(0) probably_damaging(0.998) TCGA-BR-8680-01 5 156256 156256 C T PLEKHG4B Missense_Mutation p.S404F 0.44 deleterious(0.03) benign(0.427) TCGA-BR-8680-01 5 156589906 156589906 G A FAM71B Missense_Mutation p.A457V 0.37 tolerated(0.06) benign(0) TCGA-BR-8680-01 5 156607913 156607913 C A ITK 5'UTR 0.32 TCGA-BR-8680-01 5 156734839 156734839 G T CYFIP2 Missense_Mutation p.R263I 0.50 deleterious(0) possibly_damaging(0.775) TCGA-BR-8680-01 5 156747684 156747684 G T CYFIP2 Missense_Mutation p.K489N 0.34 tolerated(0.22) benign(0.017) TCGA-BR-8680-01 5 156786115 156786115 G A CYFIP2 Missense_Mutation p.A900T 0.34 tolerated(0.06) probably_damaging(0.91) TCGA-BR-8680-01 5 157182405 157182405 C T LSM11 3'UTR 0.40 TCGA-BR-8680-01 5 158596042 158596042 C T RNF145 Silent p.T350T 0.33 TCGA-BR-8680-01 5 15928442 15928442 G A FBXL7 Missense_Mutation p.V191I 0.33 tolerated(0.43) benign(0.018) TCGA-BR-8680-01 5 159781843 159781843 C T C1QTNF2 Missense_Mutation p.R104Q 0.26 tolerated(0.13) unknown(0) TCGA-BR-8680-01 5 159992649 159992649 G C ATP10B Missense_Mutation p.H1399Q 0.28 tolerated_low_confidence(0.72) benign(0.005) TCGA-BR-8680-01 5 159992842 159992842 T C ATP10B Missense_Mutation p.D1335G 0.33 deleterious(0.02) probably_damaging(0.968) TCGA-BR-8680-01 5 161128750 161128750 A G GABRA6 Missense_Mutation p.T445A 0.32 deleterious_low_confidence(0) benign(0.257) TCGA-BR-8680-01 5 161300284 161300284 G T GABRA1 Missense_Mutation p.M139I 0.31 tolerated(0.54) benign(0.096) TCGA-BR-8680-01 5 161309607 161309607 G A GABRA1 Silent p.E201E 0.36 TCGA-BR-8680-01 5 161317999 161317999 C A GABRA1 Missense_Mutation p.L267I 0.30 deleterious(0.02) benign(0.144) TCGA-BR-8680-01 5 161324122 161324122 G T GABRA1 Missense_Mutation p.K355N 0.27 tolerated(0.18) probably_damaging(0.995) TCGA-BR-8680-01 5 161324264 161324264 G A GABRA1 Missense_Mutation p.E403K 0.28 tolerated(0.19) benign(0.002) TCGA-BR-8680-01 5 161495013 161495013 C T GABRG2 Missense_Mutation p.S3L 0.34 deleterious_low_confidence(0.02) benign(0.005) TCGA-BR-8680-01 5 161530961 161530961 G T GABRG2 Missense_Mutation p.R273I 0.39 deleterious(0.03) probably_damaging(0.999) TCGA-BR-8680-01 5 162900198 162900198 A G HMMR Missense_Mutation p.K222E 0.14 deleterious(0.01) possibly_damaging(0.886) TCGA-BR-8680-01 5 162900450 162900450 A C HMMR Missense_Mutation p.E264A 0.28 tolerated(0.1) possibly_damaging(0.547) TCGA-BR-8680-01 5 162902491 162902491 C T HMMR Missense_Mutation p.L361F 0.26 deleterious(0.01) probably_damaging(0.929) TCGA-BR-8680-01 5 16465454 16465454 C A ZNF622 Missense_Mutation p.E107D 0.28 tolerated(0.07) benign(0.051) TCGA-BR-8680-01 5 16671611 16671611 A C MYO10 Missense_Mutation p.F1784V 0.24 tolerated(0.12) probably_damaging(0.968) TCGA-BR-8680-01 5 167551866 167551866 G A TENM2 Missense_Mutation p.D674N 0.46 deleterious(0) probably_damaging(0.928) TCGA-BR-8680-01 5 167671461 167671461 C T TENM2 Nonsense_Mutation p.R1853* 0.34 TCGA-BR-8680-01 5 167855774 167855774 G A WWC1 Missense_Mutation p.R661Q 0.47 tolerated(1) benign(0.001) TCGA-BR-8680-01 5 16794857 16794857 C T MYO10 Missense_Mutation p.S122N 0.24 tolerated(0.22) benign(0.423) TCGA-BR-8680-01 5 167990936 167990936 T G PANK3 Missense_Mutation p.D257A 0.36 tolerated(0.13) probably_damaging(0.999) TCGA-BR-8680-01 5 169141087 169141087 G A DOCK2 Missense_Mutation p.R572Q 0.33 deleterious(0.01) possibly_damaging(0.83) TCGA-BR-8680-01 5 169679511 169679511 G T LCP2 Nonsense_Mutation p.S417* 0.50 TCGA-BR-8680-01 5 170725884 170725884 C T RANBP17 3'UTR 0.27 TCGA-BR-8680-01 5 170818793 170818793 G A NPM1 Silent p.Q114Q 0.36 TCGA-BR-8680-01 5 171295779 171295779 G A FBXW11 Missense_Mutation p.R497W 0.38 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 5 171299912 171299912 C T FBXW11 Missense_Mutation p.R414H 0.39 deleterious(0.01) possibly_damaging(0.881) TCGA-BR-8680-01 5 172341770 172341770 G A ERGIC1 Missense_Mutation p.D102N 0.09 tolerated(0.12) possibly_damaging(0.576) TCGA-BR-8680-01 5 172396461 172396461 C A RPL26L1 Missense_Mutation p.L119I 0.27 tolerated(0.12) benign(0.143) TCGA-BR-8680-01 5 172513516 172513516 G T CREBRF Nonsense_Mutation p.G8* 0.29 TCGA-BR-8680-01 5 172590728 172590728 T G BNIP1 Missense_Mutation p.V207G 0.22 tolerated(0.14) benign(0.03) TCGA-BR-8680-01 5 173316602 173316602 G A CPEB4 5'UTR 0.29 TCGA-BR-8680-01 5 176003151 176003151 G A CDHR2 Missense_Mutation p.D387N 0.42 tolerated(0.33) benign(0.07) TCGA-BR-8680-01 5 176308305 176308305 C T HK3 Silent p.P875P 0.29 TCGA-BR-8680-01 5 176636805 176636805 G T NSD1 Missense_Mutation p.D469Y 0.35 deleterious_low_confidence(0) possibly_damaging(0.885) TCGA-BR-8680-01 5 176671259 176671259 G T NSD1 Missense_Mutation p.D1456Y 0.33 deleterious(0) benign(0.367) TCGA-BR-8680-01 5 177422982 177422982 C A PROP1 5'UTR 0.38 TCGA-BR-8680-01 5 177580513 177580513 A C NHP2 Missense_Mutation p.F70C 0.32 tolerated(0.16) possibly_damaging(0.617) TCGA-BR-8680-01 5 177681965 177681965 G T COL23A1 Silent p.I315I 0.32 TCGA-BR-8680-01 5 178139758 178139758 C A ZNF354A Missense_Mutation p.R374I 0.30 deleterious(0) probably_damaging(0.987) TCGA-BR-8680-01 5 178152396 178152396 A G ZNF354A Silent p.G79G 0.23 TCGA-BR-8680-01 5 178194260 178194260 G A AACSP1 RNA 0.22 TCGA-BR-8680-01 5 178309931 178309931 A C ZNF354B Missense_Mutation p.N160H 0.31 tolerated(0.54) probably_damaging(0.91) TCGA-BR-8680-01 5 178373364 178373364 C T ZNF454 Missense_Mutation p.S13L 0.33 tolerated(0.45) benign(0.001) TCGA-BR-8680-01 5 178392029 178392029 A C ZNF454 Missense_Mutation p.K208N 0.45 deleterious(0.03) possibly_damaging(0.449) TCGA-BR-8680-01 5 178392784 178392784 G T ZNF454 Missense_Mutation p.R460I 0.31 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 5 178460208 178460208 G T ZNF879 Missense_Mutation p.R420I 0.30 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 5 178460260 178460260 C T ZNF879 Silent p.F437F 0.33 TCGA-BR-8680-01 5 178505734 178505734 T G ZNF354C Missense_Mutation p.F101V 0.38 tolerated(0.5) benign(0.115) TCGA-BR-8680-01 5 178506881 178506881 T G ZNF354C Nonsense_Mutation p.L483* 0.39 TCGA-BR-8680-01 5 178541025 178541025 G A ADAMTS2 Missense_Mutation p.A1160V 0.36 deleterious_low_confidence(0.05) benign(0.038) TCGA-BR-8680-01 5 178557056 178557056 C A ADAMTS2 Missense_Mutation p.E778D 0.32 tolerated(0.17) benign(0.107) TCGA-BR-8680-01 5 178770784 178770784 C T ADAMTS2 Missense_Mutation p.S173N 0.37 tolerated(0.07) probably_damaging(1) TCGA-BR-8680-01 5 179195995 179195995 T C MAML1 Silent p.L626L 0.33 TCGA-BR-8680-01 5 179221059 179221059 C T LTC4S 5'UTR 0.28 TCGA-BR-8680-01 5 179302018 179302018 G A TBC1D9B Silent p.C690C 0.29 TCGA-BR-8680-01 5 179529139 179529139 A C RASGEF1C Silent p.L436L 0.38 TCGA-BR-8680-01 5 179743815 179743815 G A GFPT2 Silent p.C367C 0.36 TCGA-BR-8680-01 5 179994129 179994129 G A CNOT6 Silent p.E253E 0.36 TCGA-BR-8680-01 5 180057603 180057603 C A FLT4 Missense_Mutation p.A118S 0.33 tolerated(0.1) benign(0.11) TCGA-BR-8680-01 5 180662178 180662178 G A TRIM41 3'UTR 0.36 TCGA-BR-8680-01 5 19747052 19747052 C A CDH18 Missense_Mutation p.M174I 0.33 tolerated(0.29) benign(0.001) TCGA-BR-8680-01 5 21752079 21752079 G T CDH12 Missense_Mutation p.H718N 0.24 tolerated(0.64) benign(0.003) TCGA-BR-8680-01 5 21975363 21975363 C A CDH12 Missense_Mutation p.E121D 0.27 deleterious(0) possibly_damaging(0.855) TCGA-BR-8680-01 5 23526399 23526399 A C PRDM9 Missense_Mutation p.K401T 0.33 tolerated(0.06) benign(0.1) TCGA-BR-8680-01 5 24487619 24487619 G T CDH10 3'UTR 0.32 TCGA-BR-8680-01 5 24487912 24487912 A C CDH10 Missense_Mutation p.S743A 0.27 deleterious(0) possibly_damaging(0.886) TCGA-BR-8680-01 5 24505233 24505233 C T CDH10 Missense_Mutation p.A461T 0.31 deleterious(0) benign(0.052) TCGA-BR-8680-01 5 26881475 26881475 C A CDH9 Missense_Mutation p.D714Y 0.27 deleterious(0) possibly_damaging(0.812) TCGA-BR-8680-01 5 26881565 26881565 C A CDH9 Nonsense_Mutation p.E684* 0.38 TCGA-BR-8680-01 5 26890660 26890660 G A CDH9 Missense_Mutation p.R423W 0.33 tolerated(0.17) probably_damaging(0.998) TCGA-BR-8680-01 5 26902745 26902745 T C CDH9 Missense_Mutation p.K365E 0.10 tolerated(0.13) benign(0.095) TCGA-BR-8680-01 5 26988334 26988334 T C CDH9 Missense_Mutation p.K36R 0.34 tolerated(0.8) benign(0) TCGA-BR-8680-01 5 31313500 31313500 G A CDH6 Silent p.S443S 0.35 TCGA-BR-8680-01 5 31323161 31323161 C T CDH6 Missense_Mutation p.R707C 0.25 tolerated(0.05) possibly_damaging(0.873) TCGA-BR-8680-01 5 31323563 31323563 C T CDH6 3'UTR 0.33 TCGA-BR-8680-01 5 31508786 31508786 C T DROSHA Missense_Mutation p.R510H 0.28 tolerated(0.07) benign(0.188) TCGA-BR-8680-01 5 31521241 31521241 C T DROSHA Silent p.K312K 0.33 TCGA-BR-8680-01 5 31799489 31799489 A G PDZD2 Missense_Mutation p.Y45C 0.27 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 5 32087704 32087704 T G PDZD2 Missense_Mutation p.S1384A 0.15 tolerated(0.25) benign(0.009) TCGA-BR-8680-01 5 32388677 32388677 G T ZFR Missense_Mutation p.S749Y 0.33 deleterious(0) unknown(0) TCGA-BR-8680-01 5 32712124 32712124 G A NPR3 Missense_Mutation p.R81H 0.29 deleterious(0.01) possibly_damaging(0.658) TCGA-BR-8680-01 5 32774841 32774841 G A NPR3 Missense_Mutation p.D363N 0.34 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 5 32783106 32783106 G A NPR3 Silent p.E466E 0.62 TCGA-BR-8680-01 5 32789659 32789659 G T AC026703.1 Missense_Mutation p.R51I 0.62 possibly_damaging(0.506) TCGA-BR-8680-01 5 32789995 32789995 C T NPR3 3'UTR 0.52 TCGA-BR-8680-01 5 33467669 33467669 T G TARS Silent p.V709V 0.32 TCGA-BR-8680-01 5 34033499 34033499 G A C1QTNF3 Silent p.G160G 0.43 TCGA-BR-8680-01 5 34043141 34043141 G A C1QTNF3 Silent p.S30S 0.30 TCGA-BR-8680-01 5 34807920 34807920 G A RAI14 Missense_Mutation p.E116K 0.30 deleterious(0.01) benign(0.291) TCGA-BR-8680-01 5 34845772 34845772 A G TTC23L Silent p.E83E 0.26 TCGA-BR-8680-01 5 34913634 34913634 C T RAD1 Missense_Mutation p.R83Q 0.31 tolerated(0.38) benign(0.044) TCGA-BR-8680-01 5 35035348 35035348 T C AGXT2 Missense_Mutation p.N187S 0.15 tolerated(0.27) benign(0.032) TCGA-BR-8680-01 5 35039553 35039553 C T AGXT2 Missense_Mutation p.A80T 0.39 tolerated(0.73) benign(0.002) TCGA-BR-8680-01 5 35628563 35628563 T C SPEF2 Silent p.S20S 0.29 TCGA-BR-8680-01 5 35873660 35873660 C T IL7R Nonsense_Mutation p.R206* 0.28 TCGA-BR-8680-01 5 35965926 35965926 C A UGT3A1 Missense_Mutation p.K135N 0.38 deleterious(0.02) benign(0.169) TCGA-BR-8680-01 5 36049086 36049086 T G UGT3A2 Missense_Mutation p.N250H 0.32 deleterious(0.01) probably_damaging(0.996) TCGA-BR-8680-01 5 36166751 36166751 G A SKP2 Missense_Mutation p.A175T 0.23 tolerated(0.07) benign(0.003) TCGA-BR-8680-01 5 36608664 36608664 C T SLC1A3 Missense_Mutation p.R47W 0.32 deleterious(0) probably_damaging(0.991) TCGA-BR-8680-01 5 36671167 36671167 T C SLC1A3 Missense_Mutation p.M119T 0.35 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 5 36677045 36677045 G A SLC1A3 Missense_Mutation p.E207K 0.39 tolerated(0.41) benign(0.108) TCGA-BR-8680-01 5 36971016 36971016 A C NIPBL Missense_Mutation p.N217H 0.33 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-BR-8680-01 5 37183640 37183640 T G C5orf42 Missense_Mutation p.D1548A 0.24 deleterious(0) probably_damaging(0.993) TCGA-BR-8680-01 5 37299063 37299063 T C NUP155 Missense_Mutation p.T1234A 0.35 tolerated(0.73) benign(0.001) TCGA-BR-8680-01 5 37727132 37727132 C T WDR70 Missense_Mutation p.S621F 0.28 deleterious(0) possibly_damaging(0.519) TCGA-BR-8680-01 5 38481831 38481831 T G LIFR Missense_Mutation p.I1054L 0.35 tolerated(0.48) benign(0.007) TCGA-BR-8680-01 5 38506127 38506127 C T LIFR Missense_Mutation p.E391K 0.31 tolerated(0.36) benign(0.004) TCGA-BR-8680-01 5 38523553 38523553 G T LIFR Missense_Mutation p.L177I 0.05 tolerated(0.08) possibly_damaging(0.903) TCGA-BR-8680-01 5 38884119 38884119 G A OSMR Silent p.V203V 0.34 TCGA-BR-8680-01 5 38924691 38924691 C A OSMR Missense_Mutation p.L680I 0.33 deleterious(0.03) possibly_damaging(0.776) TCGA-BR-8680-01 5 38945754 38945754 T G RICTOR Missense_Mutation p.E1491A 0.26 tolerated(0.22) benign(0.055) TCGA-BR-8680-01 5 39202791 39202791 C A FYB Missense_Mutation p.R101I 0.31 deleterious(0) possibly_damaging(0.646) TCGA-BR-8680-01 5 39311447 39311447 A G C9 Silent p.I301I 0.36 TCGA-BR-8680-01 5 39342196 39342196 T G C9 Missense_Mutation p.Q60H 0.28 tolerated(0.07) benign(0.285) TCGA-BR-8680-01 5 39376141 39376141 C A DAB2 Missense_Mutation p.E735D 0.32 tolerated(0.24) benign(0.138) TCGA-BR-8680-01 5 39382876 39382876 C T DAB2 Silent p.P395P 0.32 TCGA-BR-8680-01 5 40767575 40767575 C A PRKAA1 Missense_Mutation p.D287Y 0.41 deleterious(0) probably_damaging(0.979) TCGA-BR-8680-01 5 40832758 40832758 C T RPL37 Intron 0.28 TCGA-BR-8680-01 5 40852710 40852710 G T CARD6 Missense_Mutation p.D426Y 0.13 deleterious(0) benign(0.313) TCGA-BR-8680-01 5 40853422 40853422 A G CARD6 Missense_Mutation p.N663S 0.37 tolerated(0.18) benign(0.359) TCGA-BR-8680-01 5 40998171 40998171 T C MROH2B Missense_Mutation p.T1581A 0.33 tolerated_low_confidence(0.06) benign(0.108) TCGA-BR-8680-01 5 41058242 41058242 G A MROH2B Missense_Mutation p.R227C 0.35 tolerated(0.17) benign(0) TCGA-BR-8680-01 5 41181522 41181522 C T C6 Missense_Mutation p.R289K 0.35 tolerated(1) benign(0) TCGA-BR-8680-01 5 41382433 41382433 G A PLCXD3 Missense_Mutation p.P103S 0.38 deleterious(0.01) probably_damaging(0.998) TCGA-BR-8680-01 5 42719381 42719381 C T GHR Missense_Mutation p.P591L 0.31 deleterious(0) probably_damaging(0.998) TCGA-BR-8680-01 5 43175276 43175276 T G ZNF131 3'UTR 0.20 TCGA-BR-8680-01 5 43245835 43245835 A G NIM1K 5'UTR 0.28 TCGA-BR-8680-01 5 43446338 43446338 G T C5orf28 Missense_Mutation p.R212S 0.08 tolerated(0.4) benign(0.052) TCGA-BR-8680-01 5 43454073 43454073 A C C5orf28 5'UTR 0.24 TCGA-BR-8680-01 5 43490760 43490760 G A C5orf34 Missense_Mutation p.S551L 0.30 tolerated(0.17) benign(0.084) TCGA-BR-8680-01 5 43613147 43613147 G A NNT Missense_Mutation p.E97K 0.29 tolerated(0.81) possibly_damaging(0.756) TCGA-BR-8680-01 5 44811250 44811250 C T MRPS30 Silent p.L247L 0.31 TCGA-BR-8680-01 5 50117077 50117077 T C PARP8 Missense_Mutation p.S567P 0.41 deleterious(0) possibly_damaging(0.493) TCGA-BR-8680-01 5 50137929 50137929 C T PARP8 3'UTR 0.30 TCGA-BR-8680-01 5 50689553 50689553 G T ISL1 3'UTR 0.35 TCGA-BR-8680-01 5 5186365 5186365 G A ADAMTS16 Splice_Site p.X321_splice 0.09 TCGA-BR-8680-01 5 52216277 52216277 T G ITGA1 Silent p.T757T 0.11 TCGA-BR-8680-01 5 5239839 5239839 G A ADAMTS16 Missense_Mutation p.R775H 0.35 tolerated(0.32) benign(0.021) TCGA-BR-8680-01 5 52779982 52779982 C T FST Missense_Mutation p.R194W 0.32 deleterious(0.01) probably_damaging(0.965) TCGA-BR-8680-01 5 54275116 54275116 A G ESM1 3'UTR 0.38 TCGA-BR-8680-01 5 54404084 54404084 C T GZMA Silent p.S163S 0.38 TCGA-BR-8680-01 5 5460963 5460963 C T KIAA0947 Nonsense_Mutation p.R506* 0.38 TCGA-BR-8680-01 5 5461150 5461150 G A KIAA0947 Missense_Mutation p.R568Q 0.37 tolerated(0.2) benign(0.275) TCGA-BR-8680-01 5 5461831 5461831 A G KIAA0947 Missense_Mutation p.D795G 0.41 deleterious(0.01) possibly_damaging(0.801) TCGA-BR-8680-01 5 54721131 54721131 C A PPAP2A Missense_Mutation p.R254I 0.35 deleterious(0) benign(0.336) TCGA-BR-8680-01 5 54922327 54922328 - A SLC38A9 Frame_Shift_Ins p.M561Yfs*14 0.28 TCGA-BR-8680-01 5 54993700 54993700 A C SLC38A9 Missense_Mutation p.F29L 0.20 tolerated(0.31) benign(0.014) TCGA-BR-8680-01 5 55059080 55059080 G T DDX4 Missense_Mutation p.G95C 0.36 deleterious_low_confidence(0) possibly_damaging(0.738) TCGA-BR-8680-01 5 55082355 55082355 G T DDX4 Nonsense_Mutation p.E292* 0.40 TCGA-BR-8680-01 5 55164656 55164656 C A IL31RA Nonsense_Mutation p.Y64* 0.34 TCGA-BR-8680-01 5 55212583 55212583 T G IL31RA Missense_Mutation p.F644V 0.28 deleterious(0.03) benign(0.362) TCGA-BR-8680-01 5 56181765 56181765 C T MAP3K1 Missense_Mutation p.S1330L 0.24 deleterious(0) probably_damaging(0.934) TCGA-BR-8680-01 5 56526703 56526703 A C GPBP1 Missense_Mutation p.N39H 0.36 tolerated(1) benign(0.014) TCGA-BR-8680-01 5 56546838 56546838 A C GPBP1 Missense_Mutation p.N351H 0.37 deleterious(0.01) probably_damaging(0.992) TCGA-BR-8680-01 5 57752802 57752802 T G PLK2 Missense_Mutation p.K376Q 0.43 tolerated(0.11) benign(0.323) TCGA-BR-8680-01 5 57754894 57754894 A G PLK2 Missense_Mutation p.M99T 0.30 deleterious(0.01) possibly_damaging(0.492) TCGA-BR-8680-01 5 58287668 58287668 G A PDE4D Silent p.V393V 0.33 TCGA-BR-8680-01 5 58652665 58652665 A T PDE4D Intron 0.32 TCGA-BR-8680-01 5 59901524 59901524 C T DEPDC1B Missense_Mutation p.R353Q 0.28 deleterious(0) possibly_damaging(0.667) TCGA-BR-8680-01 5 59941376 59941376 C T DEPDC1B Missense_Mutation p.R174H 0.42 deleterious(0.01) probably_damaging(0.993) TCGA-BR-8680-01 5 59982961 59982961 C T DEPDC1B Missense_Mutation p.E48K 0.35 deleterious(0.01) probably_damaging(0.991) TCGA-BR-8680-01 5 60067919 60067919 A G ELOVL7 Silent p.D22D 0.25 TCGA-BR-8680-01 5 61643984 61643984 A C KIF2A Missense_Mutation p.K90T 0.28 tolerated(0.16) possibly_damaging(0.812) TCGA-BR-8680-01 5 61669521 61669521 G T KIF2A Nonsense_Mutation p.E590* 0.28 TCGA-BR-8680-01 5 63509662 63509662 G A RNF180 Missense_Mutation p.R170Q 0.31 tolerated(0.53) benign(0) TCGA-BR-8680-01 5 64892294 64892294 T G TRIM23 Missense_Mutation p.K458N 0.26 tolerated(0.43) benign(0.021) TCGA-BR-8680-01 5 64976553 64976553 T G SGTB Missense_Mutation p.D183A 0.38 deleterious(0) probably_damaging(0.995) TCGA-BR-8680-01 5 6623341 6623341 G A NSUN2 Missense_Mutation p.R175W 0.34 deleterious(0) possibly_damaging(0.773) TCGA-BR-8680-01 5 66410079 66410079 T G MAST4 Intron 0.30 TCGA-BR-8680-01 5 66438048 66438048 A G MAST4 Missense_Mutation p.D867G 0.31 probably_damaging(0.951) TCGA-BR-8680-01 5 68470866 68470866 C G CCNB1 Missense_Mutation p.L290V 0.31 deleterious(0) probably_damaging(0.961) TCGA-BR-8680-01 5 68470918 68470918 G A CCNB1 Missense_Mutation p.R307Q 0.35 deleterious(0.04) benign(0.084) TCGA-BR-8680-01 5 68681898 68681898 C A RAD17 Missense_Mutation p.S236Y 0.28 deleterious(0) possibly_damaging(0.537) TCGA-BR-8680-01 5 68710312 68710312 C T RAD17 3'UTR 0.27 TCGA-BR-8680-01 5 70308498 70308498 G A NAIP Missense_Mutation p.A82V 0.27 deleterious(0.03) probably_damaging(0.989) TCGA-BR-8680-01 5 70308571 70308571 G A NAIP Missense_Mutation p.R58C 0.30 deleterious(0) probably_damaging(0.998) TCGA-BR-8680-01 5 70786822 70786822 G A BDP1 Missense_Mutation p.A502T 0.28 tolerated(0.52) benign(0.164) TCGA-BR-8680-01 5 70791146 70791146 C T BDP1 Silent p.F570F 0.30 TCGA-BR-8680-01 5 70805836 70805836 G A BDP1 Missense_Mutation p.V973M 0.32 tolerated(0.35) benign(0.041) TCGA-BR-8680-01 5 70810930 70810930 G A BDP1 Missense_Mutation p.D1544N 0.27 deleterious(0.02) possibly_damaging(0.461) TCGA-BR-8680-01 5 70818628 70818628 G T BDP1 Missense_Mutation p.D1747Y 0.39 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 5 70855831 70855831 T C BDP1 Silent p.D2421D 0.37 TCGA-BR-8680-01 5 70858262 70858262 A G BDP1 Missense_Mutation p.E2553G 0.10 deleterious(0) benign(0.015) TCGA-BR-8680-01 5 70948577 70948577 G A MCCC2 Missense_Mutation p.A524T 0.31 deleterious_low_confidence(0) probably_damaging(0.917) TCGA-BR-8680-01 5 71494696 71494696 C T MAP1B Silent p.F1838F 0.31 TCGA-BR-8680-01 5 71524145 71524145 T G MRPS27 Missense_Mutation p.K214N 0.24 deleterious(0.02) probably_damaging(0.998) TCGA-BR-8680-01 5 71739902 71739902 C T ZNF366 Missense_Mutation p.S639N 0.26 tolerated_low_confidence(0.53) benign(0.001) TCGA-BR-8680-01 5 72201159 72201159 C T TNPO1 Silent p.G873G 0.30 TCGA-BR-8680-01 5 72285288 72285288 A C FCHO2 Missense_Mutation p.T54P 0.28 deleterious(0.01) possibly_damaging(0.708) TCGA-BR-8680-01 5 72798357 72798357 A G BTF3 Silent p.T82T 0.10 TCGA-BR-8680-01 5 72801174 72801174 C T BTF3 3'UTR 0.37 TCGA-BR-8680-01 5 73153952 73153952 G A ARHGEF28 Missense_Mutation p.R652Q 0.31 tolerated(0.19) probably_damaging(0.941) TCGA-BR-8680-01 5 73207201 73207201 T G ARHGEF28 Missense_Mutation p.N1583K 0.28 deleterious(0.02) benign(0.15) TCGA-BR-8680-01 5 74047274 74047274 G A GFM2 Nonsense_Mutation p.R117* 0.34 TCGA-BR-8680-01 5 74066522 74066522 C T NSA2 Nonsense_Mutation p.R137* 0.32 TCGA-BR-8680-01 5 74135896 74135896 G T FAM169A Intron 0.26 TCGA-BR-8680-01 5 74324701 74324701 G A GCNT4 Nonsense_Mutation p.R388* 0.46 TCGA-BR-8680-01 5 74645970 74645970 A C HMGCR Missense_Mutation p.L220F 0.29 tolerated(0.08) probably_damaging(0.942) TCGA-BR-8680-01 5 74869615 74869615 G A POLK Missense_Mutation p.G154E 0.35 deleterious(0) probably_damaging(0.974) TCGA-BR-8680-01 5 74892287 74892287 A G POLK Missense_Mutation p.K590R 0.32 tolerated(0.16) benign(0.012) TCGA-BR-8680-01 5 74970105 74970105 G A POC5 3'UTR 0.47 TCGA-BR-8680-01 5 75427987 75427987 T C SV2C Missense_Mutation p.Y138H 0.29 tolerated(0.13) probably_damaging(1) TCGA-BR-8680-01 5 75913486 75913486 A C F2RL2 Missense_Mutation p.L349R 0.33 deleterious(0) probably_damaging(0.983) TCGA-BR-8680-01 5 75927780 75927780 A G IQGAP2 Missense_Mutation p.D570G 0.33 tolerated(1) benign(0.001) TCGA-BR-8680-01 5 76129240 76129240 C T F2RL1 Nonsense_Mutation p.R270* 0.37 TCGA-BR-8680-01 5 76344002 76344002 G A AGGF1 Nonsense_Mutation p.W406* 0.25 TCGA-BR-8680-01 5 77409712 77409712 C T AP3B1 Missense_Mutation p.E705K 0.27 tolerated(0.61) benign(0.001) TCGA-BR-8680-01 5 77423858 77423858 T G AP3B1 Missense_Mutation p.E655A 0.07 tolerated(0.2) benign(0.011) TCGA-BR-8680-01 5 77717663 77717663 T C SCAMP1 Silent p.L171L 0.09 TCGA-BR-8680-01 5 7789775 7789775 A G ADCY2 Silent p.L830L 0.39 TCGA-BR-8680-01 5 78407644 78407644 C T BHMT 5'UTR 0.40 TCGA-BR-8680-01 5 78608246 78608246 T C JMY Silent p.D663D 0.32 TCGA-BR-8680-01 5 78608266 78608266 C T JMY Missense_Mutation p.A670V 0.34 tolerated(0.13) benign(0.392) TCGA-BR-8680-01 5 78734856 78734856 C T HOMER1 Silent p.Q168Q 0.23 TCGA-BR-8680-01 5 78975427 78975427 C T PAPD4 Missense_Mutation p.R412C 0.37 deleterious(0) probably_damaging(0.988) TCGA-BR-8680-01 5 79026867 79026867 A C CMYA5 Missense_Mutation p.E760A 0.35 probably_damaging(0.956) TCGA-BR-8680-01 5 79028077 79028077 A C CMYA5 Missense_Mutation p.E1163D 0.38 benign(0.002) TCGA-BR-8680-01 5 79028508 79028508 C T CMYA5 Missense_Mutation p.S1307F 0.17 probably_damaging(0.979) TCGA-BR-8680-01 5 79028992 79028992 T G CMYA5 Silent p.V1468V 0.38 TCGA-BR-8680-01 5 79031392 79031392 T G CMYA5 Missense_Mutation p.I2268M 0.31 benign(0.081) TCGA-BR-8680-01 5 79031470 79031470 C T CMYA5 Silent p.I2294I 0.35 TCGA-BR-8680-01 5 79032569 79032569 A C CMYA5 Missense_Mutation p.K2661Q 0.27 probably_damaging(0.959) TCGA-BR-8680-01 5 79378945 79378945 T G THBS4 Missense_Mutation p.F956C 0.40 deleterious_low_confidence(0.01) possibly_damaging(0.671) TCGA-BR-8680-01 5 79732754 79732754 A G ZFYVE16 Missense_Mutation p.T84A 0.37 tolerated(0.87) benign(0.001) TCGA-BR-8680-01 5 79733028 79733028 T C ZFYVE16 Missense_Mutation p.V175A 0.36 tolerated(0.24) benign(0.004) TCGA-BR-8680-01 5 79746389 79746389 T C ZFYVE16 Silent p.Y1122Y 0.34 TCGA-BR-8680-01 5 79752310 79752310 A C ZFYVE16 Missense_Mutation p.N1241H 0.33 tolerated(0.05) benign(0.376) TCGA-BR-8680-01 5 80064742 80064742 G A MSH3 Missense_Mutation p.E725K 0.35 tolerated(1) benign(0.002) TCGA-BR-8680-01 5 80109451 80109451 A C MSH3 Missense_Mutation p.K902Q 0.36 deleterious(0) probably_damaging(0.989) TCGA-BR-8680-01 5 80422905 80422905 A G RASGRF2 Missense_Mutation p.D870G 0.32 deleterious_low_confidence(0.03) possibly_damaging(0.579) TCGA-BR-8680-01 5 80497154 80497154 C T RASGRF2 Silent p.F933F 0.34 TCGA-BR-8680-01 5 80559356 80559356 G A CKMT2 Missense_Mutation p.R354H 0.40 deleterious(0.02) probably_damaging(1) TCGA-BR-8680-01 5 80639678 80639678 C A ACOT12 Nonsense_Mutation p.E335* 0.27 TCGA-BR-8680-01 5 81573622 81573622 T G RPS23 Silent p.R18R 0.37 TCGA-BR-8680-01 5 82808265 82808265 C T VCAN Intron 0.26 TCGA-BR-8680-01 5 82815188 82815188 G A VCAN Missense_Mutation p.D355N 0.75 deleterious(0.03) benign(0.189) TCGA-BR-8680-01 5 82832766 82832766 C T VCAN Intron 0.32 TCGA-BR-8680-01 5 82833723 82833723 C A VCAN Missense_Mutation p.S1634Y 0.39 deleterious(0.01) probably_damaging(0.944) TCGA-BR-8680-01 5 82834640 82834640 G A VCAN Missense_Mutation p.E1940K 0.32 tolerated(0.17) benign(0.424) TCGA-BR-8680-01 5 82834920 82834920 T G VCAN Missense_Mutation p.F2033C 0.35 deleterious(0.02) possibly_damaging(0.619) TCGA-BR-8680-01 5 82876348 82876348 T C VCAN 3'UTR 0.24 TCGA-BR-8680-01 5 82969357 82969357 G T HAPLN1 5'UTR 0.35 TCGA-BR-8680-01 5 85592091 85592091 A C NBPF22P RNA 0.44 TCGA-BR-8680-01 5 86686667 86686667 A C RASA1 Missense_Mutation p.Q1037H 0.39 deleterious(0.01) possibly_damaging(0.797) TCGA-BR-8680-01 5 86690384 86690384 T C CCNH Intron 0.38 TCGA-BR-8680-01 5 87498828 87498828 T C TMEM161B Missense_Mutation p.T289A 0.31 tolerated(1) benign(0.24) TCGA-BR-8680-01 5 89695264 89695264 C T CETN3 Missense_Mutation p.R124Q 0.36 deleterious(0.01) possibly_damaging(0.655) TCGA-BR-8680-01 5 89814712 89814712 A G LYSMD3 Missense_Mutation p.I282T 0.36 tolerated_low_confidence(0.12) benign(0.004) TCGA-BR-8680-01 5 89821102 89821102 G A LYSMD3 Missense_Mutation p.A2V 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.477) TCGA-BR-8680-01 5 89948166 89948166 T G GPR98 Missense_Mutation p.I1140M 0.32 possibly_damaging(0.703) TCGA-BR-8680-01 5 89986685 89986685 C T GPR98 Nonsense_Mutation p.R2260* 0.26 TCGA-BR-8680-01 5 90136657 90136657 C T GPR98 Missense_Mutation p.S5625L 0.30 possibly_damaging(0.602) TCGA-BR-8680-01 5 90669530 90669530 G A ARRDC3 Nonsense_Mutation p.R387* 0.31 TCGA-BR-8680-01 5 90678662 90678662 T C ARRDC3 Missense_Mutation p.N83S 0.05 tolerated(0.49) benign(0.002) TCGA-BR-8680-01 5 9227037 9227037 C T SEMA5A Missense_Mutation p.D126N 0.14 tolerated(0.51) benign(0.008) TCGA-BR-8680-01 5 94863782 94863782 C T TTC37 Missense_Mutation p.A357T 0.31 tolerated(0.33) possibly_damaging(0.67) TCGA-BR-8680-01 5 94992038 94992038 T C RFESD 3'UTR 0.38 TCGA-BR-8680-01 5 95011265 95011265 G A SPATA9 Missense_Mutation p.R77C 0.39 deleterious(0.01) possibly_damaging(0.502) TCGA-BR-8680-01 5 96064902 96064902 G T CAST Intron 0.35 TCGA-BR-8680-01 5 96117444 96117444 T G ERAP1 Missense_Mutation p.Q800H 0.29 deleterious(0.02) benign(0.007) TCGA-BR-8680-01 5 98129003 98129003 G A RGMB Missense_Mutation p.R328H 0.24 tolerated(0.14) benign(0.005) TCGA-BR-8680-01 5 98191918 98191918 T G CHD1 3'UTR 0.30 TCGA-BR-8680-01 5 98209305 98209305 T C CHD1 Missense_Mutation p.E1188G 0.31 deleterious(0.04) benign(0.027) TCGA-BR-8680-01 6 100395798 100395798 C A MCHR2 Missense_Mutation p.A78S 0.32 deleterious(0.01) probably_damaging(1) TCGA-BR-8680-01 6 101091945 101091945 T C ASCC3 Missense_Mutation p.I1232V 0.39 deleterious(0.02) possibly_damaging(0.897) TCGA-BR-8680-01 6 101166000 101166000 C T ASCC3 Missense_Mutation p.R677Q 0.36 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 6 101246682 101246682 A G ASCC3 Silent p.N434N 0.38 TCGA-BR-8680-01 6 101248368 101248368 T G ASCC3 Missense_Mutation p.K312T 0.41 tolerated(0.41) benign(0.159) TCGA-BR-8680-01 6 101306951 101306951 T G ASCC3 Intron 0.43 TCGA-BR-8680-01 6 102074270 102074270 C A GRIK2 Missense_Mutation p.S100Y 0.36 tolerated(0.06) possibly_damaging(0.508) TCGA-BR-8680-01 6 102134199 102134199 G A GRIK2 Missense_Mutation p.D308N 0.25 tolerated(0.49) benign(0.16) TCGA-BR-8680-01 6 105224916 105224916 G A HACE1 Missense_Mutation p.A583V 0.48 tolerated(0.06) possibly_damaging(0.576) TCGA-BR-8680-01 6 105239404 105239404 T G HACE1 Missense_Mutation p.K350T 0.35 tolerated(0.35) benign(0.031) TCGA-BR-8680-01 6 105577274 105577274 G T BVES Missense_Mutation p.L111I 0.45 tolerated(0.18) benign(0.049) TCGA-BR-8680-01 6 105606497 105606497 T G POPDC3 Missense_Mutation p.K242Q 0.36 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 6 105816843 105816843 C T PREP Missense_Mutation p.D218N 0.27 tolerated(0.32) benign(0.002) TCGA-BR-8680-01 6 10586905 10586905 G A GCNT2 Intron 0.32 TCGA-BR-8680-01 6 107780297 107780297 A G PDSS2 Missense_Mutation p.S65P 0.32 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 6 108041709 108041709 G A SCML4 Intron 0.35 TCGA-BR-8680-01 6 108499413 108499413 C T NR2E1 Missense_Mutation p.P204S 0.26 deleterious(0.01) probably_damaging(0.96) TCGA-BR-8680-01 6 10876691 10876691 G A GCM2 Missense_Mutation p.A148V 0.31 tolerated(0.08) possibly_damaging(0.545) TCGA-BR-8680-01 6 109286202 109286202 G T ARMC2 Missense_Mutation p.D769Y 0.34 deleterious(0) probably_damaging(0.956) TCGA-BR-8680-01 6 109787482 109787482 C T ZBTB24 Missense_Mutation p.V556I 0.30 deleterious(0.01) probably_damaging(0.997) TCGA-BR-8680-01 6 109814771 109814771 A C AK9 Missense_Mutation p.F1846C 0.07 deleterious(0) possibly_damaging(0.907) TCGA-BR-8680-01 6 109816641 109816641 G A AK9 Missense_Mutation p.S1773L 0.28 tolerated(1) benign(0.002) TCGA-BR-8680-01 6 109820263 109820263 G T AK9 Missense_Mutation p.S1677Y 0.21 deleterious(0) probably_damaging(0.998) TCGA-BR-8680-01 6 110048403 110048403 C T FIG4 Silent p.V127V 0.27 TCGA-BR-8680-01 6 110301480 110301480 G A GPR6 3'UTR 0.32 TCGA-BR-8680-01 6 110424718 110424718 A C WASF1 Silent p.L252L 0.32 TCGA-BR-8680-01 6 110713969 110713969 T G DDO 3'UTR 0.31 TCGA-BR-8680-01 6 11104843 11104843 C T ERVFRD-1 Missense_Mutation p.R234Q 0.28 tolerated(0.37) probably_damaging(0.921) TCGA-BR-8680-01 6 111288852 111288852 G T GTF3C6 Missense_Mutation p.E167D 0.36 tolerated(0.07) benign(0.053) TCGA-BR-8680-01 6 111540115 111540115 C T SLC16A10 Silent p.F395F 0.33 TCGA-BR-8680-01 6 111621065 111621065 A G REV3L 3'UTR 0.47 TCGA-BR-8680-01 6 111680142 111680142 C A REV3L Missense_Mutation p.D2319Y 0.35 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 6 111694807 111694807 C T REV3L Missense_Mutation p.R1584Q 0.32 deleterious(0) probably_damaging(0.997) TCGA-BR-8680-01 6 111695509 111695509 T C REV3L Missense_Mutation p.E1350G 0.39 deleterious_low_confidence(0) possibly_damaging(0.849) TCGA-BR-8680-01 6 111709117 111709117 C A REV3L Splice_Site p.X316_splice 0.38 TCGA-BR-8680-01 6 111995824 111995824 A C FYN Missense_Mutation p.F428C 0.31 deleterious(0.01) benign(0.025) TCGA-BR-8680-01 6 112389552 112389552 G A WISP3 Missense_Mutation p.R263K 0.20 deleterious(0) probably_damaging(0.994) TCGA-BR-8680-01 6 112397530 112397530 T C TUBE1 Missense_Mutation p.N211D 0.26 deleterious(0) probably_damaging(0.998) TCGA-BR-8680-01 6 112496523 112496523 G A LAMA4 Missense_Mutation p.A450V 0.33 deleterious(0.05) benign(0.075) TCGA-BR-8680-01 6 112513010 112513010 G A LAMA4 Silent p.S182S 0.32 TCGA-BR-8680-01 6 11575838 11575838 A G TMEM170B 3'UTR 0.07 TCGA-BR-8680-01 6 116441409 116441409 T C COL10A1 Missense_Mutation p.T624A 0.42 deleterious(0) possibly_damaging(0.75) TCGA-BR-8680-01 6 116441517 116441517 T G COL10A1 Missense_Mutation p.I588L 0.35 tolerated(0.07) possibly_damaging(0.634) TCGA-BR-8680-01 6 116720368 116720368 C T DSE 5'UTR 0.42 TCGA-BR-8680-01 6 116879488 116879488 T C FAM26D 3'UTR 0.36 TCGA-BR-8680-01 6 117086337 117086337 G A FAM162B Missense_Mutation p.S85L 0.25 deleterious(0.03) possibly_damaging(0.453) TCGA-BR-8680-01 6 117127925 117127925 G A GPRC6A Missense_Mutation p.P315S 0.28 tolerated(0.14) probably_damaging(0.95) TCGA-BR-8680-01 6 117203536 117203536 C T RFX6 Missense_Mutation p.R171C 0.22 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 6 117203581 117203581 G A RFX6 Missense_Mutation p.G186S 0.24 deleterious(0.01) probably_damaging(1) TCGA-BR-8680-01 6 117641051 117641051 C T ROS1 Missense_Mutation p.E1974K 0.21 tolerated(0.08) possibly_damaging(0.781) TCGA-BR-8680-01 6 117647545 117647545 T G ROS1 Missense_Mutation p.N1800T 0.37 tolerated(0.12) benign(0.002) TCGA-BR-8680-01 6 117658374 117658374 C A ROS1 Nonsense_Mutation p.E1737* 0.33 TCGA-BR-8680-01 6 118588164 118588164 G T SLC35F1 Missense_Mutation p.D162Y 0.29 deleterious(0) probably_damaging(0.973) TCGA-BR-8680-01 6 118844970 118844970 G A CEP85L Silent p.I381I 0.25 TCGA-BR-8680-01 6 118880293 118880293 C A PLN 3'UTR 0.27 TCGA-BR-8680-01 6 119221986 119221986 A C ASF1A Missense_Mutation p.Q55H 0.34 deleterious(0.04) probably_damaging(1) TCGA-BR-8680-01 6 119226904 119226904 G T ASF1A Nonsense_Mutation p.E105* 0.62 TCGA-BR-8680-01 6 119345901 119345901 T G FAM184A Missense_Mutation p.E79D 0.27 tolerated(0.09) probably_damaging(0.988) TCGA-BR-8680-01 6 119510876 119510876 A G MAN1A1 Missense_Mutation p.L500P 0.38 deleterious(0) probably_damaging(0.996) TCGA-BR-8680-01 6 12120209 12120209 A C HIVEP1 Missense_Mutation p.K61Q 0.34 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 6 12120319 12120319 G T HIVEP1 Missense_Mutation p.Q97H 0.38 tolerated(0.23) benign(0.013) TCGA-BR-8680-01 6 12121176 12121176 T G HIVEP1 Missense_Mutation p.V383G 0.35 deleterious(0) probably_damaging(0.939) TCGA-BR-8680-01 6 12122667 12122667 T C HIVEP1 Missense_Mutation p.V880A 0.33 deleterious(0.01) possibly_damaging(0.529) TCGA-BR-8680-01 6 121642797 121642797 C A TBC1D32 Missense_Mutation p.R100I 0.32 deleterious(0.01) benign(0.337) TCGA-BR-8680-01 6 122753198 122753198 G A HSF2 Missense_Mutation p.E482K 0.30 deleterious(0.04) benign(0.048) TCGA-BR-8680-01 6 123124953 123124953 A C SMPDL3A Missense_Mutation p.N238T 0.28 tolerated(1) benign(0.014) TCGA-BR-8680-01 6 123699033 123699033 C A TRDN Missense_Mutation p.K399N 0.29 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-BR-8680-01 6 125550384 125550384 A C TPD52L1 Missense_Mutation p.S86R 0.06 deleterious(0.01) possibly_damaging(0.832) TCGA-BR-8680-01 6 127469858 127469858 T G RSPO3 Missense_Mutation p.L55V 0.29 deleterious(0.03) possibly_damaging(0.906) TCGA-BR-8680-01 6 127608756 127608756 G A RNF146 Missense_Mutation p.R333Q 0.27 tolerated(0.08) benign(0.002) TCGA-BR-8680-01 6 127765306 127765306 C A KIAA0408 Missense_Mutation p.R678I 0.27 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 6 127770989 127770989 G A KIAA0408 Nonsense_Mutation p.R186* 0.29 TCGA-BR-8680-01 6 127797590 127797590 G A SOGA3 Silent p.C527C 0.40 TCGA-BR-8680-01 6 128150816 128150816 C A THEMIS Nonsense_Mutation p.E172* 0.28 TCGA-BR-8680-01 6 128176253 128176253 T C THEMIS Missense_Mutation p.K58E 0.37 deleterious(0) probably_damaging(0.94) TCGA-BR-8680-01 6 12933942 12933942 G A PHACTR1 Missense_Mutation p.E110K 0.36 unknown(0) TCGA-BR-8680-01 6 12934078 12934078 G T PHACTR1 Missense_Mutation p.R155I 0.39 unknown(0) TCGA-BR-8680-01 6 129380932 129380932 G T LAMA2 Missense_Mutation p.R96I 0.21 deleterious(0) probably_damaging(0.981) TCGA-BR-8680-01 6 129826403 129826403 G T LAMA2 Missense_Mutation p.R2869I 0.29 tolerated(0.18) benign(0.281) TCGA-BR-8680-01 6 130154651 130154651 A C TMEM244 Missense_Mutation p.D91E 0.34 deleterious(0.02) probably_damaging(0.996) TCGA-BR-8680-01 6 130497126 130497126 G A SAMD3 Missense_Mutation p.R228C 0.38 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 6 130505666 130505666 C T SAMD3 Silent p.E162E 0.37 TCGA-BR-8680-01 6 130762121 130762121 A G TMEM200A Missense_Mutation p.Y185C 0.39 tolerated(0.18) benign(0.001) TCGA-BR-8680-01 6 130762228 130762228 C T TMEM200A Nonsense_Mutation p.R221* 0.38 TCGA-BR-8680-01 6 131276416 131276416 T G EPB41L2 Missense_Mutation p.K178N 0.38 tolerated(0.33) benign(0.179) TCGA-BR-8680-01 6 131911481 131911481 C A MED23 Missense_Mutation p.R1263I 0.29 deleterious(0) probably_damaging(0.99) TCGA-BR-8680-01 6 132179855 132179855 A C ENPP1 Missense_Mutation p.K255Q 0.29 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 6 132641802 132641802 C T MOXD1 Missense_Mutation p.R444H 0.26 tolerated(0.51) benign(0.014) TCGA-BR-8680-01 6 13288638 13288638 G A TBC1D7 Intron 0.33 TCGA-BR-8680-01 6 133827290 133827290 T G EYA4 Missense_Mutation p.I413S 0.37 deleterious(0) probably_damaging(0.97) TCGA-BR-8680-01 6 135752450 135752450 G T AHI1 Missense_Mutation p.H757N 0.33 tolerated(0.64) possibly_damaging(0.815) TCGA-BR-8680-01 6 136589344 136589344 C A BCLAF1 Nonsense_Mutation p.E785* 0.22 TCGA-BR-8680-01 6 136590593 136590593 T G BCLAF1 Missense_Mutation p.K734T 0.24 deleterious(0.02) possibly_damaging(0.607) TCGA-BR-8680-01 6 136597477 136597477 C A BCLAF1 Missense_Mutation p.D396Y 0.14 deleterious(0) probably_damaging(0.934) TCGA-BR-8680-01 6 136888937 136888937 T C MAP3K5 Missense_Mutation p.H1198R 0.34 tolerated(0.39) benign(0) TCGA-BR-8680-01 6 136904864 136904864 C T MAP3K5 Silent p.P1080P 0.36 TCGA-BR-8680-01 6 136923031 136923031 A G MAP3K5 Silent p.D922D 0.38 TCGA-BR-8680-01 6 138413106 138413106 C T PERP 3'UTR 0.44 TCGA-BR-8680-01 6 138644882 138644882 C T KIAA1244 Missense_Mutation p.A1614V 0.30 deleterious(0.03) possibly_damaging(0.625) TCGA-BR-8680-01 6 138655224 138655224 G A KIAA1244 Silent p.T1747T 0.24 TCGA-BR-8680-01 6 139564361 139564361 C T TXLNB Missense_Mutation p.E453K 0.29 deleterious(0.02) possibly_damaging(0.877) TCGA-BR-8680-01 6 142623392 142623392 G A GPR126 5'UTR 0.43 TCGA-BR-8680-01 6 142691792 142691792 C T GPR126 Nonsense_Mutation p.R311* 0.26 TCGA-BR-8680-01 6 143082678 143082678 G T HIVEP2 Missense_Mutation p.S1848Y 0.30 deleterious(0) probably_damaging(0.998) TCGA-BR-8680-01 6 143749553 143749553 C A ADAT2 3'UTR 0.27 TCGA-BR-8680-01 6 144086472 144086472 C T PHACTR2 Missense_Mutation p.R257C 0.32 deleterious_low_confidence(0) benign(0.006) TCGA-BR-8680-01 6 144768371 144768371 G A UTRN Missense_Mutation p.E547K 0.28 deleterious(0.04) benign(0.368) TCGA-BR-8680-01 6 144808711 144808711 G A UTRN Missense_Mutation p.A1284T 0.33 tolerated(0.17) benign(0.035) TCGA-BR-8680-01 6 144860536 144860536 A C UTRN Missense_Mutation p.K2159T 0.35 tolerated(0.16) benign(0.006) TCGA-BR-8680-01 6 144869983 144869983 G A UTRN Missense_Mutation p.R2268Q 0.43 tolerated(0.23) probably_damaging(0.999) TCGA-BR-8680-01 6 146126324 146126324 T G FBXO30 Silent p.V406V 0.29 TCGA-BR-8680-01 6 146266673 146266673 G A SHPRH Silent p.Y474Y 0.30 TCGA-BR-8680-01 6 147123923 147123923 G T ADGB Intron 0.31 TCGA-BR-8680-01 6 147124649 147124649 G A ADGB Intron 0.27 TCGA-BR-8680-01 6 147124761 147124761 C A ADGB Intron 0.30 TCGA-BR-8680-01 6 147680279 147680279 G T STXBP5 Nonsense_Mutation p.E789* 0.32 TCGA-BR-8680-01 6 147684753 147684753 C T STXBP5 Missense_Mutation p.S943L 0.36 deleterious(0.01) probably_damaging(0.984) TCGA-BR-8680-01 6 147703987 147703987 C T STXBP5 Silent p.G1089G 0.33 TCGA-BR-8680-01 6 148865654 148865654 G A SASH1 Silent p.A1016A 0.67 TCGA-BR-8680-01 6 149395372 149395372 C T UST 3'UTR 0.56 TCGA-BR-8680-01 6 149721599 149721599 A G SUMO4 Silent p.G24G 0.42 TCGA-BR-8680-01 6 149862082 149862082 G A PPIL4 Missense_Mutation p.S106F 0.47 deleterious(0) probably_damaging(0.986) TCGA-BR-8680-01 6 149954037 149954037 T G KATNA1 Missense_Mutation p.N60H 0.63 tolerated(0.18) benign(0.306) TCGA-BR-8680-01 6 149983146 149983146 T G LATS1 Missense_Mutation p.N1038H 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8680-01 6 149983213 149983213 G T LATS1 Missense_Mutation p.F1015L 0.53 deleterious(0.01) benign(0.177) TCGA-BR-8680-01 6 151161391 151161391 G A PLEKHG1 Missense_Mutation p.A1173T 0.48 tolerated(0.31) benign(0.003) TCGA-BR-8680-01 6 151239797 151239797 G A MTHFD1L Missense_Mutation p.R326Q 0.57 deleterious(0) possibly_damaging(0.63) TCGA-BR-8680-01 6 151672532 151672532 G T AKAP12 Missense_Mutation p.M1002I 0.62 deleterious(0) probably_damaging(0.986) TCGA-BR-8680-01 6 151865837 151865837 G A CCDC170 Missense_Mutation p.D192N 0.47 tolerated(0.1) possibly_damaging(0.676) TCGA-BR-8680-01 6 151894465 151894465 G A CCDC170 Missense_Mutation p.A311T 0.14 tolerated(0.34) benign(0.358) TCGA-BR-8680-01 6 15246693 15246693 T C JARID2 5'UTR 0.39 TCGA-BR-8680-01 6 152576134 152576134 G C SYNE1 Missense_Mutation p.R6451G 0.57 benign(0.028) TCGA-BR-8680-01 6 152631869 152631869 C T SYNE1 Missense_Mutation p.R5617Q 0.32 benign(0.001) TCGA-BR-8680-01 6 152725425 152725425 T G SYNE1 Silent p.R2250R 0.43 TCGA-BR-8680-01 6 152792886 152792886 G A SYNE1 Missense_Mutation p.S493F 0.46 benign(0.118) TCGA-BR-8680-01 6 152826458 152826458 G A SYNE1 Missense_Mutation p.A219V 0.50 possibly_damaging(0.771) TCGA-BR-8680-01 6 154440007 154440007 C T OPRM1 3'Flank 0.25 TCGA-BR-8680-01 6 15501389 15501389 C T JARID2 Missense_Mutation p.R733C 0.27 deleterious(0) possibly_damaging(0.886) TCGA-BR-8680-01 6 155578994 155578994 A C TFB1M Missense_Mutation p.D339E 0.53 tolerated(0.63) possibly_damaging(0.739) TCGA-BR-8680-01 6 159653106 159653106 G A FNDC1 Missense_Mutation p.R521Q 0.52 deleterious_low_confidence(0.01) unknown(0) TCGA-BR-8680-01 6 159653414 159653414 G A FNDC1 Missense_Mutation p.A624T 0.64 tolerated_low_confidence(1) unknown(0) TCGA-BR-8680-01 6 160200773 160200773 A G TCP1 Missense_Mutation p.V447A 0.53 tolerated(0.05) benign(0.286) TCGA-BR-8680-01 6 161015117 161015117 A G LPA Missense_Mutation p.C1168R 0.59 deleterious(0) probably_damaging(0.994) TCGA-BR-8680-01 6 1610914 1610914 G T FOXC1 Missense_Mutation p.K78N 0.37 deleterious(0) probably_damaging(0.99) TCGA-BR-8680-01 6 161160158 161160158 G A PLG Missense_Mutation p.E646K 0.44 deleterious(0.02) probably_damaging(0.985) TCGA-BR-8680-01 6 161470677 161470677 C T MAP3K4 Missense_Mutation p.T458M 0.44 tolerated(0.07) benign(0.028) TCGA-BR-8680-01 6 161513055 161513055 T G MAP3K4 Missense_Mutation p.V1050G 0.57 deleterious(0) possibly_damaging(0.792) TCGA-BR-8680-01 6 16274705 16274705 C A GMPR Silent p.I175I 0.29 TCGA-BR-8680-01 6 165713944 165713944 T G C6orf118 Missense_Mutation p.Q262P 0.51 tolerated(0.43) benign(0.023) TCGA-BR-8680-01 6 168440763 168440763 G A KIF25 Silent p.S171S 0.45 TCGA-BR-8680-01 6 169067237 169067237 T C SMOC2 3'UTR 0.15 TCGA-BR-8680-01 6 170592125 170592125 G A DLL1 Missense_Mutation p.S706L 0.41 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 6 17648090 17648090 A C NUP153 Missense_Mutation p.F527C 0.33 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 6 18222229 18222229 C T KDM1B 3'UTR 0.31 TCGA-BR-8680-01 6 18256686 18256686 C T DEK Missense_Mutation p.V120M 0.33 tolerated(0.09) probably_damaging(0.964) TCGA-BR-8680-01 6 18572108 18572108 T C MIR548A1 RNA 0.37 TCGA-BR-8680-01 6 20118675 20118675 T G MBOAT1 Missense_Mutation p.K335T 0.07 tolerated(0.13) benign(0.217) TCGA-BR-8680-01 6 20480168 20480168 G A E2F3 Missense_Mutation p.R162Q 0.34 tolerated(0.44) benign(0.335) TCGA-BR-8680-01 6 20483077 20483077 G A E2F3 Silent p.E270E 0.24 TCGA-BR-8680-01 6 24145834 24145834 G A NRSN1 Missense_Mutation p.G83D 0.38 deleterious(0) probably_damaging(0.995) TCGA-BR-8680-01 6 24489651 24489651 A G GPLD1 Missense_Mutation p.V30A 0.33 tolerated(0.06) benign(0.422) TCGA-BR-8680-01 6 24547244 24547244 A C KIAA0319 3'UTR 0.33 TCGA-BR-8680-01 6 24596714 24596714 T C KIAA0319 Missense_Mutation p.D63G 0.31 deleterious(0.01) probably_damaging(0.945) TCGA-BR-8680-01 6 24714604 24714605 - T C6orf62 Frame_Shift_Ins p.I124Nfs*8 0.25 TCGA-BR-8680-01 6 24784681 24784681 G T GMNN Nonsense_Mutation p.E123* 0.17 TCGA-BR-8680-01 6 25682209 25682209 C T SCGN Missense_Mutation p.R168W 0.21 deleterious(0.01) benign(0.034) TCGA-BR-8680-01 6 26092943 26092943 T C HFE Missense_Mutation p.V216A 0.32 tolerated(0.51) benign(0.005) TCGA-BR-8680-01 6 26157150 26157150 G A HIST1H1E Missense_Mutation p.A178T 0.29 tolerated(0.24) unknown(0) TCGA-BR-8680-01 6 26235166 26235166 T G HIST1H1D 5'UTR 0.31 TCGA-BR-8680-01 6 26250748 26250748 C A HIST1H3F Missense_Mutation p.S29I 0.25 deleterious_low_confidence(0.03) benign(0) TCGA-BR-8680-01 6 26373510 26373510 T C BTN3A2 Missense_Mutation p.L308P 0.10 deleterious(0) possibly_damaging(0.83) TCGA-BR-8680-01 6 26428927 26428927 T G BTN2A3P RNA 0.31 TCGA-BR-8680-01 6 2671570 2671570 G A MYLK4 Missense_Mutation p.R378C 0.19 tolerated_low_confidence(0.07) benign(0) TCGA-BR-8680-01 6 2770510 2770510 C T WRNIP1 Nonsense_Mutation p.R391* 0.41 TCGA-BR-8680-01 6 28060394 28060394 A G ZNF165 3'Flank 0.21 TCGA-BR-8680-01 6 28097700 28097700 G T ZSCAN16 Missense_Mutation p.R340I 0.31 deleterious(0) probably_damaging(0.989) TCGA-BR-8680-01 6 28297521 28297521 A C ZSCAN31 Intron 0.33 TCGA-BR-8680-01 6 28499606 28499606 G A GPX5 Missense_Mutation p.G98D 0.34 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 6 28540442 28540442 C T SCAND3 Missense_Mutation p.R1075Q 0.31 tolerated_low_confidence(0.09) benign(0.04) TCGA-BR-8680-01 6 28541080 28541080 C A SCAND3 Missense_Mutation p.K862N 0.36 tolerated(0.16) benign(0.333) TCGA-BR-8680-01 6 28541478 28541478 G T SCAND3 Missense_Mutation p.H730N 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.533) TCGA-BR-8680-01 6 29365419 29365419 C A OR12D2 3'UTR 0.30 TCGA-BR-8680-01 6 29394452 29394452 A G OR11A1 3'UTR 0.30 TCGA-BR-8680-01 6 29394947 29394947 C T OR11A1 Missense_Mutation p.G158R 0.46 deleterious(0.04) benign(0.396) TCGA-BR-8680-01 6 29408578 29408578 G A OR10C1 Silent p.K262K 0.31 TCGA-BR-8680-01 6 29430506 29430506 C T OR2H1 3'UTR 0.35 TCGA-BR-8680-01 6 29455512 29455512 C A MAS1L Silent p.T56T 0.33 TCGA-BR-8680-01 6 2948628 2948628 G A SERPINB6 Silent p.F345F 0.28 TCGA-BR-8680-01 6 29550043 29550043 A G SNORD32B RNA 0.25 TCGA-BR-8680-01 6 29556646 29556646 C T OR2H2 Missense_Mutation p.L309F 0.25 tolerated(0.27) benign(0.188) TCGA-BR-8680-01 6 30121843 30121843 C T TRIM10 Missense_Mutation p.R450Q 0.32 tolerated(1) benign(0.001) TCGA-BR-8680-01 6 30314232 30314232 G A RPP21 Missense_Mutation p.V97I 0.32 tolerated(0.18) benign(0.341) TCGA-BR-8680-01 6 30458020 30458020 C A HLA-E Missense_Mutation p.S113Y 0.30 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-BR-8680-01 6 30569246 30569246 C T PPP1R10 3'UTR 0.39 TCGA-BR-8680-01 6 30577694 30577694 C A PPP1R10 Nonsense_Mutation p.E10* 0.33 TCGA-BR-8680-01 6 30644983 30644983 T G PPP1R18 3'UTR 0.32 TCGA-BR-8680-01 6 30673264 30673264 T G MDC1 Missense_Mutation p.K1232N 0.37 tolerated(0.11) benign(0.01) TCGA-BR-8680-01 6 30863249 30863249 G A DDR1 Missense_Mutation p.G528S 0.36 tolerated(0.67) benign(0.38) TCGA-BR-8680-01 6 30884684 30884684 G A VARS2 Missense_Mutation p.R264Q 0.37 tolerated(0.08) benign(0.016) TCGA-BR-8680-01 6 3119619 3119619 G T BPHL Intron 0.43 TCGA-BR-8680-01 6 31431853 31431853 A C HCP5 RNA 0.24 TCGA-BR-8680-01 6 31514407 31514407 A G ATP6V1G2 5'UTR 0.40 TCGA-BR-8680-01 6 31901481 31901481 G A C2 Silent p.S179S 0.31 TCGA-BR-8680-01 6 32013839 32013839 C A TNXB 5'UTR 0.30 TCGA-BR-8680-01 6 32036213 32036213 G A TNXB Silent p.F2058F 0.24 TCGA-BR-8680-01 6 32047025 32047025 G A RNA5SP206 5'Flank 0.32 TCGA-BR-8680-01 6 32065029 32065029 G A TNXB Missense_Mutation p.R201C 0.30 probably_damaging(0.988) TCGA-BR-8680-01 6 32130710 32130710 G T PPT2 Nonsense_Mutation p.E304* 0.32 TCGA-BR-8680-01 6 32150740 32150740 G A AGER Missense_Mutation p.S190L 0.36 deleterious(0) probably_damaging(0.971) TCGA-BR-8680-01 6 32307386 32307386 C A C6orf10 Nonsense_Mutation p.E127* 0.27 TCGA-BR-8680-01 6 32905115 32905115 G A HLA-DMB Silent p.N152N 0.33 TCGA-BR-8680-01 6 32975854 32975854 G A HLA-DOA Silent p.I89I 0.27 TCGA-BR-8680-01 6 33260034 33260034 C T RGL2 Missense_Mutation p.D727N 0.26 deleterious(0.02) probably_damaging(0.995) TCGA-BR-8680-01 6 33287518 33287518 T C DAXX Missense_Mutation p.I527V 0.34 tolerated_low_confidence(0.31) benign(0.007) TCGA-BR-8680-01 6 33423510 33423510 G A ZBTB9 Silent p.V211V 0.34 TCGA-BR-8680-01 6 34214882 34214882 T C C6orf1 Missense_Mutation p.T22A 0.28 tolerated_low_confidence(0.11) benign(0.053) TCGA-BR-8680-01 6 34802027 34802027 G A UHRF1BP1 Silent p.G124G 0.28 TCGA-BR-8680-01 6 34840168 34840168 A C UHRF1BP1 Missense_Mutation p.K1426Q 0.29 tolerated(0.17) benign(0.01) TCGA-BR-8680-01 6 34953007 34953007 G A ANKS1A Silent p.T387T 0.22 TCGA-BR-8680-01 6 35086039 35086039 G A TCP11 3'UTR 0.26 TCGA-BR-8680-01 6 350871 350871 T C DUSP22 3'UTR 0.12 TCGA-BR-8680-01 6 35213122 35213122 G A SCUBE3 Missense_Mutation p.R840H 0.10 deleterious(0) probably_damaging(0.998) TCGA-BR-8680-01 6 35391736 35391736 T C PPARD Silent p.G146G 0.33 TCGA-BR-8680-01 6 35547912 35547912 C T FKBP5 Silent p.S309S 0.35 TCGA-BR-8680-01 6 35911587 35911587 C T SLC26A8 3'UTR 0.33 TCGA-BR-8680-01 6 36285093 36285093 T G C6orf222 3'UTR 0.27 TCGA-BR-8680-01 6 36288974 36288974 A C C6orf222 Silent p.L542L 0.38 TCGA-BR-8680-01 6 36298001 36298001 C T C6orf222 Missense_Mutation p.R156H 0.30 tolerated(0.07) probably_damaging(0.923) TCGA-BR-8680-01 6 36767773 36767773 G A CPNE5 Silent p.F86F 0.34 TCGA-BR-8680-01 6 36938221 36938221 A G MTCH1 Missense_Mutation p.F311S 0.33 deleterious(0) probably_damaging(0.976) TCGA-BR-8680-01 6 38691194 38691194 A C DNAH8 5'UTR 0.30 TCGA-BR-8680-01 6 38818056 38818056 G T DNAH8 Missense_Mutation p.K1526N 0.07 probably_damaging(1) TCGA-BR-8680-01 6 38994321 38994321 G T DNAH8 Splice_Site p.X4355_splice 0.22 TCGA-BR-8680-01 6 39046914 39046914 C A GLP1R Silent p.V327V 0.38 TCGA-BR-8680-01 6 393249 393249 G A IRF4 Missense_Mutation p.D33N 0.23 deleterious(0.02) probably_damaging(0.943) TCGA-BR-8680-01 6 40359708 40359708 C T LRFN2 Missense_Mutation p.E782K 0.36 deleterious(0) possibly_damaging(0.678) TCGA-BR-8680-01 6 4069760 4069760 T G FAM217A Missense_Mutation p.N233H 0.08 tolerated(0.18) benign(0.066) TCGA-BR-8680-01 6 41130866 41130866 G T TREM2 5'UTR 0.53 TCGA-BR-8680-01 6 41318625 41318625 T G NCR2 3'UTR 0.37 TCGA-BR-8680-01 6 41898422 41898422 T C BYSL Missense_Mutation p.I207T 0.15 deleterious(0) benign(0.059) TCGA-BR-8680-01 6 42666207 42666207 C T PRPH2 Silent p.S289S 0.23 TCGA-BR-8680-01 6 42931424 42931424 G A GNMT Missense_Mutation p.V290M 0.36 deleterious(0) probably_damaging(0.983) TCGA-BR-8680-01 6 42978669 42978669 G A PPP2R5D Silent p.E535E 0.34 TCGA-BR-8680-01 6 43024071 43024071 A C MRPL2 Silent p.V126V 0.36 TCGA-BR-8680-01 6 43156447 43156447 C T CUL9 Missense_Mutation p.S725L 0.33 tolerated(0.12) benign(0.022) TCGA-BR-8680-01 6 43166427 43166427 G T CUL9 Nonsense_Mutation p.E962* 0.32 TCGA-BR-8680-01 6 43306479 43306479 C A ZNF318 Nonsense_Mutation p.E1753* 0.35 TCGA-BR-8680-01 6 43323460 43323460 G T ZNF318 Missense_Mutation p.L538I 0.37 probably_damaging(0.999) TCGA-BR-8680-01 6 43323494 43323494 A G ZNF318 Silent p.R526R 0.34 TCGA-BR-8680-01 6 43400462 43400462 C T ABCC10 Silent p.C248C 0.38 TCGA-BR-8680-01 6 43592340 43592340 A G GTPBP2 Missense_Mutation p.V336A 0.30 tolerated(0.21) benign(0.174) TCGA-BR-8680-01 6 44103088 44103088 G A TMEM63B Missense_Mutation p.R88Q 0.40 tolerated_low_confidence(0.09) benign(0.003) TCGA-BR-8680-01 6 44250104 44250104 G A TCTE1 Missense_Mutation p.R347C 0.34 tolerated(0.11) benign(0.168) TCGA-BR-8680-01 6 44360556 44360556 A C CDC5L Missense_Mutation p.E101A 0.21 deleterious(0) possibly_damaging(0.81) TCGA-BR-8680-01 6 45296101 45296101 C T RUNX2 5'Flank 0.32 TCGA-BR-8680-01 6 45515135 45515135 C A RUNX2 3'UTR 0.39 TCGA-BR-8680-01 6 45870729 45870729 C T CLIC5 3'UTR 0.32 TCGA-BR-8680-01 6 46630234 46630234 C T SLC25A27 Nonsense_Mutation p.R169* 0.29 TCGA-BR-8680-01 6 46657305 46657305 T G TDRD6 Silent p.S480S 0.33 TCGA-BR-8680-01 6 46677131 46677131 C T PLA2G7 Missense_Mutation p.A268T 0.29 deleterious(0.04) possibly_damaging(0.828) TCGA-BR-8680-01 6 46678216 46678216 A C PLA2G7 Intron 0.41 TCGA-BR-8680-01 6 46803248 46803248 C T MEP1A Silent p.D682D 0.15 TCGA-BR-8680-01 6 46821800 46821800 T G GPR116 Missense_Mutation p.N1324H 0.38 deleterious(0.04) benign(0.013) TCGA-BR-8680-01 6 46996794 46996794 T G GPR110 Missense_Mutation p.K2Q 0.29 tolerated_low_confidence(0.07) benign(0.003) TCGA-BR-8680-01 6 49419394 49419394 C A MUT Nonsense_Mutation p.E373* 0.37 TCGA-BR-8680-01 6 4954278 4954278 C T CDYL Silent p.I541I 0.18 TCGA-BR-8680-01 6 50696595 50696595 G T TFAP2D Missense_Mutation p.D209Y 0.28 deleterious(0) probably_damaging(0.986) TCGA-BR-8680-01 6 50796360 50796360 T C TFAP2B Missense_Mutation p.M190T 0.32 tolerated(0.07) benign(0.001) TCGA-BR-8680-01 6 50810818 50810818 G T TFAP2B Nonsense_Mutation p.E366* 0.64 TCGA-BR-8680-01 6 5109631 5109631 G A LYRM4 3'UTR 0.26 TCGA-BR-8680-01 6 51524753 51524753 C A PKHD1 Nonsense_Mutation p.E3391* 0.40 TCGA-BR-8680-01 6 51612618 51612618 C A PKHD1 Missense_Mutation p.D3266Y 0.30 tolerated(0.22) benign(0.011) TCGA-BR-8680-01 6 51613035 51613035 G A PKHD1 Missense_Mutation p.L3127F 0.32 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 6 51747971 51747971 C A PKHD1 Missense_Mutation p.D2424Y 0.41 deleterious(0) probably_damaging(0.996) TCGA-BR-8680-01 6 51892664 51892664 T G PKHD1 Missense_Mutation p.E1197D 0.37 tolerated(0.06) benign(0.12) TCGA-BR-8680-01 6 52051206 52051206 C T IL17A 5'UTR 0.30 TCGA-BR-8680-01 6 52268312 52268312 G A PAQR8 Missense_Mutation p.A101T 0.29 tolerated(0.13) benign(0.077) TCGA-BR-8680-01 6 52702399 52702399 C A GSTA5 Missense_Mutation p.E32D 0.26 deleterious(0.02) possibly_damaging(0.859) TCGA-BR-8680-01 6 52859107 52859107 C T GSTA4 Intron 0.36 TCGA-BR-8680-01 6 52897353 52897353 G T ICK Missense_Mutation p.L86I 0.50 deleterious(0) possibly_damaging(0.887) TCGA-BR-8680-01 6 52960345 52960345 G A FBXO9 Missense_Mutation p.R373H 0.41 deleterious(0.01) probably_damaging(0.953) TCGA-BR-8680-01 6 53767437 53767437 G T LRRC1 Missense_Mutation p.K266N 0.27 deleterious(0.03) possibly_damaging(0.561) TCGA-BR-8680-01 6 53785469 53785469 C A LRRC1 Silent p.V442V 0.36 TCGA-BR-8680-01 6 53989606 53989606 G T MLIP Missense_Mutation p.K185N 0.28 tolerated(0.13) benign(0.241) TCGA-BR-8680-01 6 54214548 54214548 G T TINAG Missense_Mutation p.D312Y 0.30 deleterious(0.01) probably_damaging(0.926) TCGA-BR-8680-01 6 54219400 54219400 C T TINAG Nonsense_Mutation p.R406* 0.40 TCGA-BR-8680-01 6 55145214 55145214 G A HCRTR2 Silent p.A359A 0.38 TCGA-BR-8680-01 6 55378740 55378740 A G HMGCLL1 Intron 0.30 TCGA-BR-8680-01 6 55659124 55659124 T G BMP5 Missense_Mutation p.N262T 0.31 tolerated(0.23) benign(0.038) TCGA-BR-8680-01 6 56325025 56325025 G A DST Nonsense_Mutation p.R5053* 0.29 TCGA-BR-8680-01 6 56354333 56354333 G A DST Silent p.I4321I 0.27 TCGA-BR-8680-01 6 56469525 56469525 C A DST Intron 0.30 TCGA-BR-8680-01 6 56480649 56480649 A G DST Intron 0.31 TCGA-BR-8680-01 6 56963933 56963933 T C ZNF451 Silent p.Y60Y 0.34 TCGA-BR-8680-01 6 56997971 56997971 C T ZNF451 Missense_Mutation p.L186F 0.21 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 6 57061318 57061318 C T RAB23 Missense_Mutation p.E110K 0.39 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 6 57467169 57467169 T G PRIM2 3'UTR 0.12 TCGA-BR-8680-01 6 57472420 57472420 C A PRIM2 3'UTR 0.11 TCGA-BR-8680-01 6 598085 598085 C A EXOC2 Nonsense_Mutation p.E337* 0.30 TCGA-BR-8680-01 6 6167838 6167838 C T F13A1 Silent p.A587A 0.27 TCGA-BR-8680-01 6 6225075 6225075 C T F13A1 Missense_Mutation p.E273K 0.30 tolerated(0.42) benign(0.106) TCGA-BR-8680-01 6 62390848 62390848 G A KHDRBS2 3'UTR 0.48 TCGA-BR-8680-01 6 637805 637805 C T EXOC2 Missense_Mutation p.R5Q 0.24 tolerated(0.06) possibly_damaging(0.885) TCGA-BR-8680-01 6 64395212 64395212 G A PHF3 Missense_Mutation p.R530Q 0.31 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 6 64395712 64395712 A C PHF3 Missense_Mutation p.I697L 0.31 deleterious(0) benign(0.011) TCGA-BR-8680-01 6 69666665 69666665 G A BAI3 Missense_Mutation p.E497K 0.24 deleterious(0.02) probably_damaging(0.995) TCGA-BR-8680-01 6 70407530 70407530 T C LMBRD1 Missense_Mutation p.N448D 0.31 tolerated(0.2) benign(0.209) TCGA-BR-8680-01 6 71009840 71009840 C T COL9A1 Missense_Mutation p.A69T 0.32 unknown(0) TCGA-BR-8680-01 6 71235543 71235543 A C FAM135A Missense_Mutation p.D919A 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.698) TCGA-BR-8680-01 6 71298431 71298431 G A C6orf57 3'UTR 0.31 TCGA-BR-8680-01 6 72975748 72975748 G A RIMS1 Missense_Mutation p.E1132K 0.38 deleterious(0.01) probably_damaging(0.993) TCGA-BR-8680-01 6 73108789 73108789 T C RIMS1 Missense_Mutation p.V1618A 0.40 deleterious(0) possibly_damaging(0.779) TCGA-BR-8680-01 6 7373574 7373574 T G CAGE1 Missense_Mutation p.K493T 0.24 deleterious(0) benign(0.118) TCGA-BR-8680-01 6 73843259 73843259 G A KCNQ5 Missense_Mutation p.E474K 0.35 deleterious(0.01) benign(0.163) TCGA-BR-8680-01 6 73905169 73905169 C T KCNQ5 3'UTR 0.30 TCGA-BR-8680-01 6 73905202 73905202 C T KCNQ5 3'UTR 0.25 TCGA-BR-8680-01 6 7405486 7405486 C A RIOK1 Missense_Mutation p.F367L 0.31 deleterious(0.03) benign(0.25) TCGA-BR-8680-01 6 74062939 74062939 C A DPPA5 3'UTR 0.32 TCGA-BR-8680-01 6 7411600 7411600 T C RIOK1 Silent p.N435N 0.35 TCGA-BR-8680-01 6 74138502 74138502 C T MB21D1 Missense_Mutation p.E383K 0.24 deleterious(0) probably_damaging(0.998) TCGA-BR-8680-01 6 74191931 74191931 C T MTO1 Missense_Mutation p.R517C 0.21 deleterious(0) probably_damaging(0.979) TCGA-BR-8680-01 6 74530184 74530184 G A CD109 Splice_Site p.X1354_splice 0.35 TCGA-BR-8680-01 6 7575554 7575554 G T DSP Missense_Mutation p.K821N 0.29 probably_damaging(0.996) TCGA-BR-8680-01 6 7584004 7584004 A C DSP Missense_Mutation p.K2170T 0.30 probably_damaging(0.996) TCGA-BR-8680-01 6 75841699 75841699 C T COL12A1 Missense_Mutation p.R1965H 0.34 probably_damaging(0.97) TCGA-BR-8680-01 6 75848567 75848567 C T COL12A1 Missense_Mutation p.A1690T 0.30 benign(0.006) TCGA-BR-8680-01 6 75890799 75890799 C A COL12A1 Nonsense_Mutation p.E674* 0.41 TCGA-BR-8680-01 6 75893216 75893216 G T COL12A1 Missense_Mutation p.L481I 0.31 probably_damaging(0.997) TCGA-BR-8680-01 6 76018411 76018411 C T FILIP1 Missense_Mutation p.G1213D 0.30 deleterious_low_confidence(0.01) unknown(0) TCGA-BR-8680-01 6 76551007 76551007 G T MYO6 Missense_Mutation p.R243I 0.28 deleterious(0) unknown(0) TCGA-BR-8680-01 6 76551055 76551055 T C MYO6 Missense_Mutation p.I259T 0.27 deleterious(0) unknown(0) TCGA-BR-8680-01 6 76604947 76604947 G T MYO6 Splice_Site p.X1036_splice 0.27 TCGA-BR-8680-01 6 76633355 76633355 T C IMPG1 Missense_Mutation p.N771S 0.24 tolerated_low_confidence(0.08) benign(0.031) TCGA-BR-8680-01 6 78173062 78173062 A G HTR1B Missense_Mutation p.V20A 0.36 tolerated_low_confidence(0.9) benign(0) TCGA-BR-8680-01 6 79656535 79656535 A C PHIP Silent p.V1421V 0.27 TCGA-BR-8680-01 6 80222985 80222985 C T LCA5 Missense_Mutation p.A222T 0.35 tolerated(0.07) possibly_damaging(0.628) TCGA-BR-8680-01 6 80223141 80223141 C A LCA5 Missense_Mutation p.A170S 0.34 tolerated(0.12) benign(0.291) TCGA-BR-8680-01 6 80717654 80717654 C T TTK Missense_Mutation p.R90C 0.41 tolerated(0.27) possibly_damaging(0.88) TCGA-BR-8680-01 6 82460081 82460081 A G FAM46A Silent p.D220D 0.35 TCGA-BR-8680-01 6 82881018 82881018 A T IBTK 3'UTR 0.21 TCGA-BR-8680-01 6 82914599 82914599 A C IBTK Missense_Mutation p.I862M 0.37 tolerated(0.75) benign(0.038) TCGA-BR-8680-01 6 83819957 83819957 A G DOPEY1 Missense_Mutation p.Y202C 0.42 deleterious(0) probably_damaging(0.98) TCGA-BR-8680-01 6 83862075 83862075 T G DOPEY1 Missense_Mutation p.L2040V 0.15 deleterious(0) benign(0.145) TCGA-BR-8680-01 6 83884180 83884180 C A PGM3 Missense_Mutation p.M413I 0.34 tolerated(0.18) benign(0) TCGA-BR-8680-01 6 83904105 83904105 T G RWDD2A 5'UTR 0.27 TCGA-BR-8680-01 6 84233365 84233365 G T PRSS35 Nonsense_Mutation p.E69* 0.26 TCGA-BR-8680-01 6 84233890 84233890 G A PRSS35 Missense_Mutation p.E244K 0.28 tolerated(0.43) benign(0.054) TCGA-BR-8680-01 6 84618734 84618734 C T CYB5R4 Missense_Mutation p.R113C 0.24 deleterious(0) probably_damaging(0.989) TCGA-BR-8680-01 6 86333812 86333812 G A SYNCRIP Missense_Mutation p.R229C 0.29 deleterious(0.04) benign(0.362) TCGA-BR-8680-01 6 86349994 86349994 T C SYNCRIP Missense_Mutation p.K107R 0.35 tolerated(0.51) probably_damaging(0.995) TCGA-BR-8680-01 6 87725558 87725558 C T HTR1E Missense_Mutation p.P169L 0.29 tolerated(0.08) benign(0.027) TCGA-BR-8680-01 6 87967536 87967536 C T ZNF292 Nonsense_Mutation p.R1397* 0.37 TCGA-BR-8680-01 6 87969690 87969690 C T ZNF292 Nonsense_Mutation p.R2115* 0.29 TCGA-BR-8680-01 6 88120335 88120335 C T C6ORF165 Silent p.G47G 0.29 TCGA-BR-8680-01 6 88123615 88123615 C T C6ORF165 Nonsense_Mutation p.R94* 0.42 TCGA-BR-8680-01 6 88126425 88126425 A G C6ORF165 Missense_Mutation p.T171A 0.34 tolerated(0.33) benign(0.013) TCGA-BR-8680-01 6 88170746 88170746 G A C6ORF165 Missense_Mutation p.D501N 0.29 tolerated(0.54) benign(0.003) TCGA-BR-8680-01 6 88231241 88231241 C A RARS2 Missense_Mutation p.D326Y 0.28 deleterious(0) probably_damaging(0.996) TCGA-BR-8680-01 6 88387650 88387650 C A AKIRIN2 Nonsense_Mutation p.E139* 0.40 TCGA-BR-8680-01 6 89790697 89790697 C A PNRC1 Nonsense_Mutation p.Y28* 0.15 TCGA-BR-8680-01 6 89872040 89872040 C A PM20D2 3'UTR 0.36 TCGA-BR-8680-01 6 90323556 90323556 T C ANKRD6 Missense_Mutation p.S188P 0.24 tolerated(0.5) benign(0.001) TCGA-BR-8680-01 6 90361988 90361988 C A MDN1 Missense_Mutation p.D5280Y 0.27 unknown(0) TCGA-BR-8680-01 6 90434994 90434994 A C MDN1 Missense_Mutation p.F1865C 0.31 probably_damaging(1) TCGA-BR-8680-01 6 90448144 90448144 C A MDN1 Nonsense_Mutation p.E1542* 0.32 TCGA-BR-8680-01 6 90450000 90450000 G T MDN1 Missense_Mutation p.R1516S 0.29 possibly_damaging(0.87) TCGA-BR-8680-01 6 90578381 90578381 A T CASP8AP2 RNA 0.27 TCGA-BR-8680-01 6 90604936 90604936 G A GJA10 Missense_Mutation p.G250D 0.33 tolerated(0.27) benign(0.003) TCGA-BR-8680-01 6 91229036 91229036 T C MAP3K7 Missense_Mutation p.T489A 0.33 deleterious(0.05) possibly_damaging(0.695) TCGA-BR-8680-01 6 97052727 97052727 C T FHL5 Silent p.R87R 0.35 TCGA-BR-8680-01 6 97246403 97246403 C T GPR63 Missense_Mutation p.R402Q 0.35 deleterious(0) probably_damaging(0.995) TCGA-BR-8680-01 6 97424044 97424044 C A KLHL32 Missense_Mutation p.D65E 0.21 tolerated(0.08) probably_damaging(0.997) TCGA-BR-8680-01 6 97562324 97562324 C A KLHL32 Silent p.S431S 0.36 TCGA-BR-8680-01 6 99374803 99374803 C T FBXL4 Missense_Mutation p.R21H 0.39 deleterious_low_confidence(0.01) benign(0.015) TCGA-BR-8680-01 6 99771429 99771429 C T FAXC Silent p.T238T 0.37 TCGA-BR-8680-01 6 99825356 99825356 T C COQ3 Missense_Mutation p.N131S 0.29 tolerated(0.23) benign(0.004) TCGA-BR-8680-01 6 99852513 99852513 G A PNISR Silent p.Y356Y 0.33 TCGA-BR-8680-01 6 99862453 99862453 T C PNISR Missense_Mutation p.D28G 0.33 deleterious(0.02) probably_damaging(0.995) TCGA-BR-8680-01 6 99885256 99885256 T G USP45 Missense_Mutation p.K727T 0.27 deleterious(0) possibly_damaging(0.809) TCGA-BR-8680-01 6 99891518 99891518 A C USP45 Missense_Mutation p.Y666D 0.22 deleterious(0) probably_damaging(0.989) TCGA-BR-8680-01 6 99956550 99956550 C T USP45 Missense_Mutation p.R70K 0.36 tolerated(0.63) benign(0.052) TCGA-BR-8680-01 7 100032928 100032928 C A PPP1R35 3'UTR 0.35 TCGA-BR-8680-01 7 100201741 100201741 G A PCOLCE Missense_Mutation p.A122T 0.35 tolerated(0.07) possibly_damaging(0.61) TCGA-BR-8680-01 7 100358106 100358106 C T ZAN Silent p.F1263F 0.36 TCGA-BR-8680-01 7 100388619 100388619 C T ZAN Silent p.Y2470Y 0.28 TCGA-BR-8680-01 7 100552191 100552191 T G MUC3A Missense_Mutation p.I314M 0.15 deleterious(0.01) probably_damaging(0.987) TCGA-BR-8680-01 7 100682994 100682994 C A MUC17 Missense_Mutation p.S2766Y 0.27 unknown(0) TCGA-BR-8680-01 7 100686614 100686614 A G MUC17 Missense_Mutation p.T3973A 0.08 benign(0.001) TCGA-BR-8680-01 7 1008927 1008927 G A COX19 3'UTR 0.35 TCGA-BR-8680-01 7 100958425 100958425 A C RABL5 Missense_Mutation p.I183S 0.30 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 7 100962276 100962276 G T RABL5 Missense_Mutation p.S26Y 0.31 deleterious(0) possibly_damaging(0.752) TCGA-BR-8680-01 7 101925144 101925144 C A SH2B2 5'Flank 0.32 TCGA-BR-8680-01 7 102517974 102517974 A G FBXL13 Silent p.Y525Y 0.35 TCGA-BR-8680-01 7 102837678 102837678 T C DPY19L2P2 RNA 0.38 TCGA-BR-8680-01 7 102856922 102856922 G A DPY19L2P2 RNA 0.33 TCGA-BR-8680-01 7 102953458 102953458 C A DNAJC2 Missense_Mutation p.R576I 0.30 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 7 102967025 102967025 G A DNAJC2 Silent p.F179F 0.28 TCGA-BR-8680-01 7 102967059 102967059 A G DNAJC2 Missense_Mutation p.V168A 0.36 deleterious(0) benign(0.271) TCGA-BR-8680-01 7 102982306 102982306 C T DNAJC2 Missense_Mutation p.E54K 0.31 tolerated(0.16) benign(0.248) TCGA-BR-8680-01 7 103061263 103061263 G T SLC26A5 Missense_Mutation p.P72T 0.34 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 7 103155842 103155842 G A RELN Missense_Mutation p.R2637C 0.34 deleterious(0) probably_damaging(0.998) TCGA-BR-8680-01 7 103179740 103179740 A C RELN Missense_Mutation p.V2322G 0.42 tolerated(0.57) possibly_damaging(0.754) TCGA-BR-8680-01 7 103205762 103205762 A C RELN Missense_Mutation p.W1725G 0.30 deleterious(0.02) benign(0.271) TCGA-BR-8680-01 7 103276722 103276722 G A RELN Missense_Mutation p.R755C 0.12 deleterious(0) probably_damaging(0.997) TCGA-BR-8680-01 7 104731694 104731694 A C KMT2E Missense_Mutation p.K552T 0.28 deleterious(0.03) benign(0.403) TCGA-BR-8680-01 7 104746336 104746336 A C KMT2E Missense_Mutation p.N828H 0.31 deleterious_low_confidence(0.02) possibly_damaging(0.703) TCGA-BR-8680-01 7 104750736 104750736 A G KMT2E Silent p.S1255S 0.33 TCGA-BR-8680-01 7 105111185 105111185 G A PUS7 Nonsense_Mutation p.R450* 0.30 TCGA-BR-8680-01 7 105187508 105187508 A C RINT1 Missense_Mutation p.I223L 0.35 tolerated(0.09) benign(0.142) TCGA-BR-8680-01 7 105662793 105662793 T G CDHR3 Missense_Mutation p.S659A 0.39 deleterious(0) possibly_damaging(0.472) TCGA-BR-8680-01 7 105902057 105902057 C T NAMPT Missense_Mutation p.V356I 0.35 tolerated(1) benign(0.019) TCGA-BR-8680-01 7 106520000 106520000 C A PIK3CG Missense_Mutation p.P810T 0.32 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 7 106938717 106938717 G A COG5 Missense_Mutation p.R426C 0.36 deleterious(0) probably_damaging(0.993) TCGA-BR-8680-01 7 107002853 107002853 C T COG5 Missense_Mutation p.R314Q 0.47 deleterious(0) probably_damaging(0.982) TCGA-BR-8680-01 7 107314667 107314667 C T SLC26A4 Silent p.D158D 0.31 TCGA-BR-8680-01 7 107408302 107408302 T G SLC26A3 Missense_Mutation p.K705T 0.25 tolerated(0.44) benign(0.042) TCGA-BR-8680-01 7 107790351 107790351 A C NRCAM 3'UTR 0.31 TCGA-BR-8680-01 7 11076293 11076293 A C PHF14 Silent p.A617A 0.26 TCGA-BR-8680-01 7 11091326 11091326 A G PHF14 Silent p.S800S 0.28 TCGA-BR-8680-01 7 111503386 111503386 G A DOCK4 Intron 0.30 TCGA-BR-8680-01 7 111958290 111958290 C T ZNF277 Silent p.G173G 0.37 TCGA-BR-8680-01 7 113518902 113518902 T A PPP1R3A Nonsense_Mutation p.K749* 0.36 TCGA-BR-8680-01 7 114271749 114271749 C T FOXP2 Missense_Mutation p.S280L 0.43 tolerated(0.06) unknown(0) TCGA-BR-8680-01 7 114298150 114298150 G A FOXP2 Silent p.S457S 0.38 TCGA-BR-8680-01 7 11446969 11446969 G A THSD7A Missense_Mutation p.P1294S 0.46 tolerated(0.53) benign(0.002) TCGA-BR-8680-01 7 11450874 11450874 C T THSD7A Missense_Mutation p.R1253Q 0.31 tolerated(0.06) probably_damaging(0.949) TCGA-BR-8680-01 7 11514155 11514155 T C THSD7A Silent p.V686V 0.30 TCGA-BR-8680-01 7 115590937 115590937 G A TFEC Missense_Mutation p.S169F 0.28 deleterious(0) probably_damaging(0.934) TCGA-BR-8680-01 7 115590981 115590981 A G TFEC Silent p.N154N 0.36 TCGA-BR-8680-01 7 116769862 116769862 G A ST7 Missense_Mutation p.R137Q 0.28 deleterious(0.04) probably_damaging(0.997) TCGA-BR-8680-01 7 116770546 116770546 T C ST7 Missense_Mutation p.Y151H 0.41 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 7 116770717 116770717 G T ST7 Intron 0.43 TCGA-BR-8680-01 7 116849924 116849924 C A ST7 Missense_Mutation p.F446L 0.31 deleterious(0) probably_damaging(0.994) TCGA-BR-8680-01 7 116960623 116960623 C T WNT2 Missense_Mutation p.R103Q 0.32 tolerated(0.46) benign(0.018) TCGA-BR-8680-01 7 117066950 117066950 T G ASZ1 Missense_Mutation p.K49Q 0.28 tolerated(0.38) benign(0.024) TCGA-BR-8680-01 7 117246794 117246794 T C CFTR Missense_Mutation p.F992S 0.40 deleterious(0.03) possibly_damaging(0.527) TCGA-BR-8680-01 7 117431919 117431919 C T CTTNBP2 Missense_Mutation p.R444Q 0.33 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 7 119915724 119915724 G T KCND2 Missense_Mutation p.E346D 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8680-01 7 120593395 120593395 C A ING3 Missense_Mutation p.F46L 0.39 tolerated(0.2) probably_damaging(0.977) TCGA-BR-8680-01 7 120704358 120704358 A C CPED1 Silent p.R203R 0.32 TCGA-BR-8680-01 7 120739989 120739989 G A CPED1 Silent p.T253T 0.28 TCGA-BR-8680-01 7 120935617 120935617 C T CPED1 Nonsense_Mutation p.R998* 0.34 TCGA-BR-8680-01 7 120978940 120978940 C T WNT16 Silent p.V213V 0.39 TCGA-BR-8680-01 7 121608065 121608065 C A PTPRZ1 Missense_Mutation p.S62Y 0.23 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 7 121651597 121651597 C T PTPRZ1 Missense_Mutation p.R833C 0.29 deleterious_low_confidence(0) possibly_damaging(0.614) TCGA-BR-8680-01 7 121653537 121653537 G T PTPRZ1 Missense_Mutation p.E1479D 0.30 deleterious_low_confidence(0.03) benign(0.002) TCGA-BR-8680-01 7 121941830 121941830 T G FEZF1 3'UTR 0.44 TCGA-BR-8680-01 7 122635462 122635462 T C TAS2R16 Missense_Mutation p.Y76C 0.36 tolerated(0.19) benign(0.006) TCGA-BR-8680-01 7 123109296 123109296 A G IQUB Missense_Mutation p.V518A 0.24 tolerated(0.09) benign(0.14) TCGA-BR-8680-01 7 123109360 123109360 C A IQUB Nonsense_Mutation p.E497* 0.38 TCGA-BR-8680-01 7 123276892 123276892 C T ASB15 Missense_Mutation p.R542W 0.36 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 7 123509153 123509153 C T HYAL4 Missense_Mutation p.R276C 0.27 deleterious(0.01) possibly_damaging(0.806) TCGA-BR-8680-01 7 123599570 123599570 G T SPAM1 Missense_Mutation p.E359D 0.33 tolerated(0.08) benign(0.038) TCGA-BR-8680-01 7 124503537 124503537 A G POT1 Missense_Mutation p.V138A 0.33 tolerated(0.57) benign(0.001) TCGA-BR-8680-01 7 124537223 124537223 G T POT1 Missense_Mutation p.S2Y 0.25 deleterious_low_confidence(0) possibly_damaging(0.758) TCGA-BR-8680-01 7 12680065 12680065 G A SCIN Missense_Mutation p.G502R 0.26 deleterious(0.01) benign(0.337) TCGA-BR-8680-01 7 127225353 127225353 A G GCC1 5'UTR 0.23 TCGA-BR-8680-01 7 127235919 127235919 T C FSCN3 Silent p.L235L 0.36 TCGA-BR-8680-01 7 127725811 127725811 C A SND1 Silent p.V761V 0.31 TCGA-BR-8680-01 7 128034631 128034631 C T IMPDH1 Missense_Mutation p.A525T 0.39 deleterious(0.02) probably_damaging(0.942) TCGA-BR-8680-01 7 128366916 128366916 A C FAM71F1 Missense_Mutation p.N282H 0.27 tolerated(0.21) benign(0.001) TCGA-BR-8680-01 7 128497188 128497188 C A FLNC Missense_Mutation p.F2526L 0.33 deleterious(0) probably_damaging(0.975) TCGA-BR-8680-01 7 128845085 128845085 C T SMO Silent p.C193C 0.43 TCGA-BR-8680-01 7 128849216 128849216 C T SMO Missense_Mutation p.R482C 0.32 deleterious(0.01) possibly_damaging(0.892) TCGA-BR-8680-01 7 129297378 129297378 G A NRF1 Missense_Mutation p.A63T 0.34 tolerated(0.36) benign(0.057) TCGA-BR-8680-01 7 129770576 129770576 G A KLHDC10 Missense_Mutation p.R440H 0.29 deleterious(0) probably_damaging(0.987) TCGA-BR-8680-01 7 129910557 129910557 G T CPA2 Nonsense_Mutation p.E105* 0.25 TCGA-BR-8680-01 7 129962563 129962563 G T CPA4 3'UTR 0.30 TCGA-BR-8680-01 7 130356562 130356562 C T TSGA13 Silent p.Q199Q 0.34 TCGA-BR-8680-01 7 131084189 131084189 A C MKLN1 Missense_Mutation p.N234H 0.36 tolerated(0.27) benign(0.009) TCGA-BR-8680-01 7 133502136 133502136 C T EXOC4 Nonsense_Mutation p.R525* 0.26 TCGA-BR-8680-01 7 133749115 133749115 A G EXOC4 Missense_Mutation p.Y920C 0.38 deleterious(0) possibly_damaging(0.721) TCGA-BR-8680-01 7 133812199 133812199 G A LRGUK Missense_Mutation p.A27T 0.26 tolerated_low_confidence(0.1) unknown(0) TCGA-BR-8680-01 7 133859329 133859329 G T LRGUK Nonsense_Mutation p.E321* 0.36 TCGA-BR-8680-01 7 133884125 133884125 A C LRGUK Missense_Mutation p.K567Q 0.36 tolerated(0.11) benign(0.34) TCGA-BR-8680-01 7 133979591 133979591 C A SLC35B4 Missense_Mutation p.K330N 0.23 deleterious(0.04) benign(0.001) TCGA-BR-8680-01 7 134346766 134346766 G T BPGM Missense_Mutation p.W169C 0.35 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 7 134552495 134552495 T G CALD1 Missense_Mutation p.F4C 0.43 deleterious(0) unknown(0) TCGA-BR-8680-01 7 134613557 134613557 C T CALD1 Missense_Mutation p.R42C 0.49 deleterious(0) unknown(0) TCGA-BR-8680-01 7 134618087 134618087 A C CALD1 Missense_Mutation p.E189D 0.32 tolerated_low_confidence(0.09) unknown(0) TCGA-BR-8680-01 7 134653182 134653182 A C CALD1 3'UTR 0.36 TCGA-BR-8680-01 7 134852550 134852550 C T C7orf49 Silent p.A49A 0.25 TCGA-BR-8680-01 7 136700761 136700761 G T CHRM2 Missense_Mutation p.K383N 0.27 deleterious(0) probably_damaging(0.969) TCGA-BR-8680-01 7 137151664 137151664 C T DGKI Intron 0.36 TCGA-BR-8680-01 7 137761318 137761318 T C AKR1D1 Silent p.I18I 0.37 TCGA-BR-8680-01 7 137776597 137776597 T G AKR1D1 Missense_Mutation p.D115E 0.35 deleterious(0) possibly_damaging(0.859) TCGA-BR-8680-01 7 138223421 138223421 G A TRIM24 Missense_Mutation p.R339H 0.34 tolerated(0.07) benign(0.124) TCGA-BR-8680-01 7 138413516 138413516 C T ATP6V0A4 Missense_Mutation p.R667Q 0.36 tolerated(0.19) benign(0.015) TCGA-BR-8680-01 7 138602923 138602923 C T KIAA1549 Silent p.T483T 0.46 TCGA-BR-8680-01 7 138603839 138603839 A G KIAA1549 Missense_Mutation p.I178T 0.35 tolerated(0.48) benign(0.011) TCGA-BR-8680-01 7 138824735 138824735 G T TTC26 Missense_Mutation p.A112S 0.30 tolerated(0.3) benign(0.004) TCGA-BR-8680-01 7 138954206 138954206 T G UBN2 Silent p.A511A 0.32 TCGA-BR-8680-01 7 138954246 138954246 A C UBN2 Missense_Mutation p.K525Q 0.16 deleterious(0.01) benign(0.305) TCGA-BR-8680-01 7 13946202 13946202 T G ETV1 Silent p.G321G 0.26 TCGA-BR-8680-01 7 13971292 13971292 G A ETV1 Missense_Mutation p.R213C 0.40 tolerated(0.06) probably_damaging(0.967) TCGA-BR-8680-01 7 13971370 13971370 G A ETV1 Missense_Mutation p.R187C 0.31 tolerated(0.07) probably_damaging(0.996) TCGA-BR-8680-01 7 140045060 140045060 G T SLC37A3 Missense_Mutation p.S377Y 0.24 deleterious(0.01) probably_damaging(0.972) TCGA-BR-8680-01 7 14027729 14027729 G T ETV1 Missense_Mutation p.L39M 0.19 deleterious(0.03) probably_damaging(0.993) TCGA-BR-8680-01 7 140501256 140501256 A G BRAF Silent p.C272C 0.36 TCGA-BR-8680-01 7 140706259 140706259 C T MRPS33 Missense_Mutation p.E98K 0.27 tolerated(0.09) unknown(0) TCGA-BR-8680-01 7 141618771 141618771 T G OR9A4 Missense_Mutation p.F32L 0.27 tolerated(1) benign(0.002) TCGA-BR-8680-01 7 141705352 141705352 A C MGAM Missense_Mutation p.K8Q 0.31 tolerated(0.06) benign(0) TCGA-BR-8680-01 7 142013358 142013358 G A TRBV4-1 Silent p.E71E 0.28 TCGA-BR-8680-01 7 142032315 142032315 T G TRBV7-1 Missense_Mutation p.I45M 0.31 tolerated(0.06) possibly_damaging(0.607) TCGA-BR-8680-01 7 142045699 142045699 A G TRBV4-2 Missense_Mutation p.N76S 0.23 deleterious(0.01) probably_damaging(0.951) TCGA-BR-8680-01 7 142104403 142104403 G A TRBV6-9 Missense_Mutation p.A21V 0.38 deleterious(0.02) benign(0.231) TCGA-BR-8680-01 7 142131506 142131506 G T TRBV5-6 Missense_Mutation p.F83L 0.39 deleterious(0.03) possibly_damaging(0.656) TCGA-BR-8680-01 7 142149178 142149178 G T TRBV5-5 Silent p.I31I 0.10 TCGA-BR-8680-01 7 142239647 142239647 T G TRBV9 Missense_Mutation p.N78T 0.33 deleterious(0.05) benign(0.117) TCGA-BR-8680-01 7 142378957 142378957 G A MTRNR2L6 3'Flank 0.36 TCGA-BR-8680-01 7 142568100 142568100 C A EPHB6 Missense_Mutation p.A914E 0.28 tolerated(0.28) probably_damaging(0.98) TCGA-BR-8680-01 7 142583225 142583225 G T TRPV6 Missense_Mutation p.L13I 0.30 tolerated_low_confidence(0.39) benign(0.003) TCGA-BR-8680-01 7 142611833 142611833 A G TRPV5 Missense_Mutation p.V499A 0.13 deleterious(0.04) possibly_damaging(0.734) TCGA-BR-8680-01 7 142622683 142622683 G A TRPV5 Missense_Mutation p.R355C 0.39 tolerated(0.14) benign(0.033) TCGA-BR-8680-01 7 142625919 142625919 G A TRPV5 Missense_Mutation p.T210I 0.33 tolerated(0.06) benign(0.029) TCGA-BR-8680-01 7 142626165 142626165 G A TRPV5 Missense_Mutation p.R180W 0.39 deleterious(0) probably_damaging(0.949) TCGA-BR-8680-01 7 142983941 142983941 C A TMEM139 3'UTR 0.26 TCGA-BR-8680-01 7 143047729 143047729 C T CLCN1 Silent p.G859G 0.28 TCGA-BR-8680-01 7 143087027 143087027 T C ZYX Missense_Mutation p.V524A 0.18 deleterious(0.01) possibly_damaging(0.773) TCGA-BR-8680-01 7 143573678 143573678 G A FAM115A Silent p.F8F 0.48 TCGA-BR-8680-01 7 143806743 143806743 C T OR2A2 Missense_Mutation p.A23V 0.42 deleterious(0) benign(0.013) TCGA-BR-8680-01 7 143826380 143826380 T C OR2A14 Missense_Mutation p.Y59H 0.35 deleterious(0.01) possibly_damaging(0.89) TCGA-BR-8680-01 7 143826408 143826408 T C OR2A14 Missense_Mutation p.V68A 0.29 deleterious(0.05) benign(0.027) TCGA-BR-8680-01 7 143881324 143881324 A C CTAGE4 Missense_Mutation p.K243T 0.26 deleterious(0) possibly_damaging(0.802) TCGA-BR-8680-01 7 143885366 143885366 C T ARHGEF35 Silent p.G37G 0.30 TCGA-BR-8680-01 7 143956182 143956182 G T OR2A7 Silent p.I180I 0.18 TCGA-BR-8680-01 7 144015689 144015689 C A OR2A1 Missense_Mutation p.H158N 0.16 tolerated(0.1) benign(0.168) TCGA-BR-8680-01 7 144098471 144098471 C A NOBOX Missense_Mutation p.R171I 0.44 deleterious(0.02) benign(0.442) TCGA-BR-8680-01 7 14613896 14613896 C A DGKB Missense_Mutation p.D572Y 0.37 deleterious(0.01) benign(0.396) TCGA-BR-8680-01 7 146997332 146997332 G A CNTNAP2 Missense_Mutation p.R483Q 0.36 tolerated(0.68) benign(0.058) TCGA-BR-8680-01 7 147092811 147092811 G A CNTNAP2 Missense_Mutation p.A537T 0.31 deleterious(0) benign(0.016) TCGA-BR-8680-01 7 14741347 14741347 G A DGKB Missense_Mutation p.R159C 0.20 deleterious(0) probably_damaging(0.998) TCGA-BR-8680-01 7 147600755 147600755 G A CNTNAP2 Missense_Mutation p.E733K 0.21 deleterious(0.03) benign(0.14) TCGA-BR-8680-01 7 147844725 147844725 C T CNTNAP2 Silent p.D899D 0.39 TCGA-BR-8680-01 7 148504761 148504761 C T EZH2 Missense_Mutation p.E745K 0.47 deleterious(0.02) benign(0.224) TCGA-BR-8680-01 7 148768115 148768115 G T ZNF786 Missense_Mutation p.H583Q 0.31 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 7 148800887 148800887 C T ZNF425 Silent p.R692R 0.40 TCGA-BR-8680-01 7 148801117 148801117 C T ZNF425 Missense_Mutation p.E616K 0.34 tolerated(0.37) benign(0.01) TCGA-BR-8680-01 7 148815333 148815333 G A ZNF425 Silent p.Y42Y 0.35 TCGA-BR-8680-01 7 148947428 148947428 G A ZNF212 Missense_Mutation p.R68H 0.37 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 7 148950967 148950967 G A ZNF212 Missense_Mutation p.E317K 0.34 tolerated(0.81) benign(0.007) TCGA-BR-8680-01 7 149172249 149172249 C T ZNF746 Silent p.P388P 0.29 TCGA-BR-8680-01 7 149498835 149498835 A G SSPO RNA 0.38 TCGA-BR-8680-01 7 149558632 149558632 C T ZNF862 Missense_Mutation p.R795C 0.24 tolerated(0.05) benign(0.016) TCGA-BR-8680-01 7 150174636 150174636 G A GIMAP8 Missense_Mutation p.R589H 0.32 tolerated(0.11) benign(0.248) TCGA-BR-8680-01 7 150837140 150837140 A C AGAP3 Missense_Mutation p.K581Q 0.19 deleterious(0) probably_damaging(0.982) TCGA-BR-8680-01 7 1511249 1511249 G A INTS1 Silent p.D2071D 0.26 TCGA-BR-8680-01 7 151254164 151254164 G T PRKAG2 3'UTR 0.30 TCGA-BR-8680-01 7 151265922 151265922 G A PRKAG2 Silent p.F371F 0.29 TCGA-BR-8680-01 7 151845714 151845714 G A KMT2C Missense_Mutation p.A4433V 0.30 probably_damaging(0.999) TCGA-BR-8680-01 7 151846058 151846058 G A KMT2C Silent p.V4318V 0.27 TCGA-BR-8680-01 7 151935840 151935840 A C KMT2C Missense_Mutation p.I868M 0.29 possibly_damaging(0.836) TCGA-BR-8680-01 7 152345946 152345946 T C XRCC2 Silent p.E208E 0.34 TCGA-BR-8680-01 7 154681193 154681193 G T DPP6 Nonsense_Mutation p.E802* 0.33 TCGA-BR-8680-01 7 154684055 154684055 C T DPP6 Silent p.D821D 0.25 TCGA-BR-8680-01 7 155473530 155473530 G A RBM33 Silent p.E165E 0.31 TCGA-BR-8680-01 7 155530977 155530977 G A RBM33 Silent p.G539G 0.35 TCGA-BR-8680-01 7 155538228 155538228 A G RBM33 Missense_Mutation p.T971A 0.29 tolerated(1) unknown(0) TCGA-BR-8680-01 7 155599139 155599139 G A SHH Missense_Mutation p.S138F 0.31 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 7 155604547 155604547 T G SHH Missense_Mutation p.E90D 0.36 deleterious(0) possibly_damaging(0.879) TCGA-BR-8680-01 7 156437272 156437272 G A RNF32 Missense_Mutation p.R32Q 0.30 tolerated(1) benign(0.002) TCGA-BR-8680-01 7 156752741 156752741 T C NOM1 Missense_Mutation p.I502T 0.39 deleterious(0.03) possibly_damaging(0.449) TCGA-BR-8680-01 7 156762533 156762533 T G NOM1 3'UTR 0.33 TCGA-BR-8680-01 7 157177652 157177652 G A DNAJB6 Silent p.S190S 0.38 TCGA-BR-8680-01 7 157341698 157341698 T C PTPRN2 Missense_Mutation p.D973G 0.41 deleterious(0) probably_damaging(0.981) TCGA-BR-8680-01 7 158437017 158437017 A C NCAPG2 Missense_Mutation p.F1115C 0.28 tolerated(0.38) benign(0.023) TCGA-BR-8680-01 7 158456966 158456966 A G NCAPG2 Silent p.R575R 0.28 TCGA-BR-8680-01 7 158715184 158715184 G A WDR60 Missense_Mutation p.V680M 0.39 deleterious(0) possibly_damaging(0.861) TCGA-BR-8680-01 7 16255710 16255710 A C ISPD Missense_Mutation p.L411R 0.30 deleterious(0) probably_damaging(0.928) TCGA-BR-8680-01 7 16255773 16255773 T C ISPD Missense_Mutation p.N390S 0.39 tolerated(0.79) benign(0.002) TCGA-BR-8680-01 7 16505131 16505131 T G SOSTDC1 Missense_Mutation p.N55H 0.09 tolerated(0.65) benign(0.008) TCGA-BR-8680-01 7 16650274 16650274 C A ANKMY2 Nonsense_Mutation p.E216* 0.25 TCGA-BR-8680-01 7 16714185 16714185 C T BZW2 Silent p.F69F 0.40 TCGA-BR-8680-01 7 17378642 17378642 G A AHR Missense_Mutation p.R398Q 0.31 deleterious(0) benign(0.256) TCGA-BR-8680-01 7 17379187 17379187 G T AHR Nonsense_Mutation p.E580* 0.36 TCGA-BR-8680-01 7 17836501 17836501 G A SNX13 Nonsense_Mutation p.R859* 0.30 TCGA-BR-8680-01 7 17854462 17854462 G A SNX13 Missense_Mutation p.R687C 0.42 deleterious(0) probably_damaging(0.988) TCGA-BR-8680-01 7 17890483 17890483 T C SNX13 Silent p.L314L 0.30 TCGA-BR-8680-01 7 18066628 18066628 G A PRPS1L1 Missense_Mutation p.R260C 0.30 deleterious(0.02) possibly_damaging(0.583) TCGA-BR-8680-01 7 18688191 18688191 G A HDAC9 Missense_Mutation p.R451Q 0.31 deleterious(0) probably_damaging(0.991) TCGA-BR-8680-01 7 18975448 18975448 G A HDAC9 Silent p.T940T 0.36 TCGA-BR-8680-01 7 19184613 19184613 G A FERD3L Missense_Mutation p.R125W 0.32 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 7 20180415 20180415 C A MACC1 3'UTR 0.27 TCGA-BR-8680-01 7 20180649 20180649 C A MACC1 Nonsense_Mutation p.E827* 0.26 TCGA-BR-8680-01 7 20420296 20420296 A C ITGB8 Missense_Mutation p.N215H 0.32 tolerated(0.08) benign(0.196) TCGA-BR-8680-01 7 20682911 20682911 G A ABCB5 Missense_Mutation p.R140Q 0.33 deleterious(0.02) benign(0.366) TCGA-BR-8680-01 7 20824181 20824181 C T SP8 Missense_Mutation p.D419N 0.40 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 7 21641066 21641066 G T DNAH11 Nonsense_Mutation p.E1160* 0.29 TCGA-BR-8680-01 7 21721288 21721288 C A DNAH11 Missense_Mutation p.S1823Y 0.31 probably_damaging(0.926) TCGA-BR-8680-01 7 21857846 21857846 C T DNAH11 Missense_Mutation p.A3534V 0.35 benign(0.002) TCGA-BR-8680-01 7 22175722 22175722 C T RAPGEF5 Missense_Mutation p.A631T 0.16 deleterious(0.02) probably_damaging(1) TCGA-BR-8680-01 7 22985298 22985298 A C FAM126A Missense_Mutation p.I492M 0.32 tolerated(0.09) benign(0.003) TCGA-BR-8680-01 7 23239806 23239806 C T NUPL2 Silent p.S238S 0.45 TCGA-BR-8680-01 7 23286505 23286505 T G GPNMB Missense_Mutation p.F10C 0.33 tolerated(0.06) benign(0.026) TCGA-BR-8680-01 7 23306137 23306137 A G GPNMB Silent p.G352G 0.27 TCGA-BR-8680-01 7 23352069 23352069 C A IGF2BP3 Missense_Mutation p.R551I 0.34 deleterious(0.01) benign(0.188) TCGA-BR-8680-01 7 23552632 23552632 G A TRA2A Missense_Mutation p.R136C 0.35 deleterious(0) probably_damaging(0.997) TCGA-BR-8680-01 7 23724207 23724207 A C FAM221A Missense_Mutation p.N52T 0.33 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 7 23811802 23811802 C T STK31 Missense_Mutation p.P624S 0.30 deleterious(0.02) benign(0.356) TCGA-BR-8680-01 7 2406181 2406181 C A EIF3B Missense_Mutation p.F437L 0.34 tolerated(0.06) benign(0.095) TCGA-BR-8680-01 7 2414218 2414218 C T EIF3B Silent p.F622F 0.29 TCGA-BR-8680-01 7 24663347 24663347 G T MPP6 Missense_Mutation p.D21Y 0.32 deleterious(0) probably_damaging(0.995) TCGA-BR-8680-01 7 26225069 26225069 G A NFE2L3 Missense_Mutation p.R584Q 0.25 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 7 27142146 27142146 G T HOXA2 5'UTR 0.36 TCGA-BR-8680-01 7 27186817 27186817 C T HOXA6 Intron 0.24 TCGA-BR-8680-01 7 27669050 27669050 C A HIBADH Nonsense_Mutation p.E142* 0.40 TCGA-BR-8680-01 7 27831686 27831686 G A TAX1BP1 Missense_Mutation p.R367Q 0.33 tolerated(0.64) possibly_damaging(0.814) TCGA-BR-8680-01 7 29035342 29035342 C A CPVL 3'UTR 0.26 TCGA-BR-8680-01 7 29132288 29132288 T C CPVL Missense_Mutation p.T165A 0.29 tolerated(0.21) benign(0.003) TCGA-BR-8680-01 7 2946428 2946428 G A CARD11 Silent p.C1103C 0.34 TCGA-BR-8680-01 7 2951926 2951926 G A CARD11 Silent p.I1008I 0.41 TCGA-BR-8680-01 7 2974176 2974176 A C CARD11 Missense_Mutation p.S477A 0.30 tolerated(0.17) possibly_damaging(0.528) TCGA-BR-8680-01 7 30185810 30185810 C T MTURN Silent p.S60S 0.35 TCGA-BR-8680-01 7 30795377 30795377 G A INMT Silent p.Q234Q 0.33 TCGA-BR-8680-01 7 31611727 31611727 A C CCDC129 Missense_Mutation p.Q133P 0.34 tolerated(0.13) benign(0.031) TCGA-BR-8680-01 7 31682346 31682346 G A CCDC129 Silent p.K480K 0.25 TCGA-BR-8680-01 7 31691657 31691657 T C CCDC129 Missense_Mutation p.I965T 0.28 deleterious(0) possibly_damaging(0.795) TCGA-BR-8680-01 7 31735144 31735144 A C PPP1R17 Missense_Mutation p.K48N 0.32 deleterious_low_confidence(0) benign(0.006) TCGA-BR-8680-01 7 31746890 31746890 C T PPP1R17 Missense_Mutation p.A154V 0.30 tolerated_low_confidence(0.23) benign(0.004) TCGA-BR-8680-01 7 31862790 31862790 C T PDE1C Silent p.P553P 0.42 TCGA-BR-8680-01 7 32909220 32909220 A G KBTBD2 Missense_Mutation p.F537L 0.35 tolerated(0.16) benign(0.009) TCGA-BR-8680-01 7 32910050 32910050 C A KBTBD2 Missense_Mutation p.R260I 0.30 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 7 33066500 33066500 G A NT5C3A Nonsense_Mutation p.R61* 0.35 TCGA-BR-8680-01 7 33312691 33312691 C T BBS9 Missense_Mutation p.A257V 0.33 tolerated(0.38) benign(0.003) TCGA-BR-8680-01 7 34192938 34192938 G A BMPER 3'UTR 0.28 TCGA-BR-8680-01 7 35129972 35129972 A C DPY19L2P1 RNA 0.35 TCGA-BR-8680-01 7 36366482 36366482 C T KIAA0895 Missense_Mutation p.E484K 0.35 deleterious(0.05) probably_damaging(0.992) TCGA-BR-8680-01 7 36435908 36435908 A C ANLN Missense_Mutation p.N18H 0.33 deleterious(0) probably_damaging(0.994) TCGA-BR-8680-01 7 36438957 36438957 A C ANLN Missense_Mutation p.K148Q 0.33 deleterious(0.04) benign(0.322) TCGA-BR-8680-01 7 36465637 36465637 A C ANLN Missense_Mutation p.H921P 0.39 tolerated(0.19) benign(0) TCGA-BR-8680-01 7 3678674 3678674 T G SDK1 Missense_Mutation p.F166C 0.33 tolerated(0.06) possibly_damaging(0.781) TCGA-BR-8680-01 7 3681706 3681706 G T SDK1 Nonsense_Mutation p.E228* 0.29 TCGA-BR-8680-01 7 37901645 37901645 G A NME8 Missense_Mutation p.E96K 0.33 deleterious(0.01) benign(0.108) TCGA-BR-8680-01 7 37907312 37907312 C T NME8 Silent p.F210F 0.36 TCGA-BR-8680-01 7 37947093 37947093 C T SFRP4 Silent p.P343P 0.38 TCGA-BR-8680-01 7 37988556 37988556 T C EPDR1 Silent p.P128P 0.32 TCGA-BR-8680-01 7 38288871 38288871 C A TRGC2 Nonsense_Mutation p.E102* 0.33 TCGA-BR-8680-01 7 38574563 38574563 C T AMPH Missense_Mutation p.E40K 0.27 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 7 38791871 38791871 G A VPS41 Missense_Mutation p.R611C 0.30 deleterious(0.02) benign(0.004) TCGA-BR-8680-01 7 38796580 38796580 T C VPS41 Missense_Mutation p.Y518C 0.33 deleterious(0.02) benign(0.06) TCGA-BR-8680-01 7 40132606 40132606 C T CDK13 Missense_Mutation p.S1153L 0.32 tolerated_low_confidence(0.24) benign(0.003) TCGA-BR-8680-01 7 40133992 40133992 G T CDK13 Nonsense_Mutation p.E1318* 0.43 TCGA-BR-8680-01 7 40228169 40228169 G A SUGCT Missense_Mutation p.R108Q 0.32 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 7 4116768 4116768 C T SDK1 Missense_Mutation p.A1050V 0.27 deleterious(0.02) benign(0.062) TCGA-BR-8680-01 7 41729180 41729180 A C INHBA 3'UTR 0.23 TCGA-BR-8680-01 7 42003980 42003980 G T GLI3 Missense_Mutation p.S1564Y 0.33 deleterious(0) probably_damaging(0.998) TCGA-BR-8680-01 7 42004153 42004153 G A GLI3 Silent p.F1506F 0.24 TCGA-BR-8680-01 7 42004714 42004714 T C GLI3 Silent p.G1319G 0.26 TCGA-BR-8680-01 7 42018306 42018306 G A GLI3 Silent p.F513F 0.34 TCGA-BR-8680-01 7 42949774 42949774 G A C7orf25 Silent p.V300V 0.27 TCGA-BR-8680-01 7 43830923 43830923 C T BLVRA Silent p.V70V 0.30 TCGA-BR-8680-01 7 43840110 43840110 C T BLVRA Silent p.F133F 0.29 TCGA-BR-8680-01 7 43846619 43846619 A C BLVRA Missense_Mutation p.N226H 0.31 tolerated(0.1) probably_damaging(0.919) TCGA-BR-8680-01 7 43921522 43921522 G A URGCP Silent p.C49C 0.32 TCGA-BR-8680-01 7 44150348 44150348 C T AEBP1 Silent p.F475F 0.34 TCGA-BR-8680-01 7 44153214 44153214 G A AEBP1 Missense_Mutation p.R944Q 0.36 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 7 44190669 44190669 G A GCK Silent p.F124F 0.25 TCGA-BR-8680-01 7 44251851 44251851 G A YKT6 Silent p.R189R 0.33 TCGA-BR-8680-01 7 44579499 44579499 T C NPC1L1 Missense_Mutation p.E166G 0.42 deleterious(0.04) benign(0.308) TCGA-BR-8680-01 7 44609623 44609623 C T DDX56 Missense_Mutation p.R372Q 0.36 deleterious(0) probably_damaging(0.997) TCGA-BR-8680-01 7 45139956 45139956 G A TBRG4 Missense_Mutation p.R622C 0.41 deleterious(0.04) possibly_damaging(0.899) TCGA-BR-8680-01 7 45662318 45662318 C T ADCY1 Silent p.F332F 0.31 TCGA-BR-8680-01 7 45688281 45688281 C T ADCY1 Missense_Mutation p.R345C 0.27 deleterious(0.02) probably_damaging(0.99) TCGA-BR-8680-01 7 45743055 45743055 C T ADCY1 Silent p.V845V 0.34 TCGA-BR-8680-01 7 45931546 45931546 G T IGFBP1 Nonsense_Mutation p.E179* 0.27 TCGA-BR-8680-01 7 47341845 47341845 G A TNS3 Silent p.I1161I 0.24 TCGA-BR-8680-01 7 47698352 47698352 G T C7orf65 Missense_Mutation p.K44N 0.33 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-BR-8680-01 7 47698912 47698912 T C C7orf65 3'UTR 0.50 TCGA-BR-8680-01 7 47814628 47814628 T G PKD1L1 3'UTR 0.37 TCGA-BR-8680-01 7 47842892 47842892 G A PKD1L1 Silent p.C2626C 0.26 TCGA-BR-8680-01 7 47894612 47894612 A C PKD1L1 Missense_Mutation p.F1576C 0.28 deleterious(0.02) probably_damaging(0.997) TCGA-BR-8680-01 7 47898276 47898276 A G PKD1L1 Silent p.L1453L 0.29 TCGA-BR-8680-01 7 47927693 47927693 C T PKD1L1 Missense_Mutation p.E911K 0.30 tolerated(0.09) possibly_damaging(0.816) TCGA-BR-8680-01 7 48269512 48269512 G A ABCA13 Silent p.S241S 0.34 TCGA-BR-8680-01 7 48311639 48311639 A C ABCA13 Missense_Mutation p.K792N 0.25 benign(0.015) TCGA-BR-8680-01 7 48315973 48315973 T C ABCA13 Missense_Mutation p.F2237S 0.22 benign(0.398) TCGA-BR-8680-01 7 48318153 48318153 G A ABCA13 Silent p.T2454T 0.23 TCGA-BR-8680-01 7 4838893 4838893 C T RADIL 3'UTR 0.36 TCGA-BR-8680-01 7 4947005 4947005 G A MMD2 3'UTR 0.42 TCGA-BR-8680-01 7 49977177 49977177 G A ZPBP Missense_Mutation p.H335Y 0.38 tolerated(0.09) probably_damaging(0.966) TCGA-BR-8680-01 7 50023074 50023074 T G ZPBP Missense_Mutation p.E275D 0.32 tolerated(0.2) probably_damaging(0.999) TCGA-BR-8680-01 7 50512915 50512915 T C FIGNL1 3'UTR 0.20 TCGA-BR-8680-01 7 53103453 53103453 C A POM121L12 Missense_Mutation p.A30E 0.19 tolerated(0.08) probably_damaging(0.962) TCGA-BR-8680-01 7 5372633 5372633 T C TNRC18 Missense_Mutation p.K1923E 0.40 possibly_damaging(0.585) TCGA-BR-8680-01 7 5410840 5410840 C T TNRC18 Missense_Mutation p.E1129K 0.34 probably_damaging(0.963) TCGA-BR-8680-01 7 5415827 5415827 C T TNRC18 Silent p.P879P 0.45 TCGA-BR-8680-01 7 54610382 54610382 C T VSTM2A 5'UTR 0.31 TCGA-BR-8680-01 7 54617880 54617880 C T VSTM2A Intron 0.25 TCGA-BR-8680-01 7 55221711 55221711 G A EGFR Missense_Mutation p.R252H 0.32 tolerated(0.12) benign(0.016) TCGA-BR-8680-01 7 55912390 55912390 G A SEPT14 Missense_Mutation p.S66L 0.33 deleterious(0) possibly_damaging(0.883) TCGA-BR-8680-01 7 55990859 55990859 C A MRPS17 Nonsense_Mutation p.S18* 0.08 TCGA-BR-8680-01 7 56045869 56045869 C T GBAS Missense_Mutation p.S48F 0.25 deleterious(0) possibly_damaging(0.77) TCGA-BR-8680-01 7 5662563 5662563 G A RNF216 Silent p.F900F 0.38 TCGA-BR-8680-01 7 57187836 57187836 C A ZNF479 Missense_Mutation p.R429I 0.29 tolerated(0.53) benign(0.003) TCGA-BR-8680-01 7 57188256 57188256 C A ZNF479 Missense_Mutation p.R289I 0.37 tolerated(0.69) probably_damaging(0.996) TCGA-BR-8680-01 7 57528892 57528892 G T ZNF716 Missense_Mutation p.R242I 0.55 deleterious(0.04) benign(0.016) TCGA-BR-8680-01 7 57529114 57529114 G T ZNF716 Missense_Mutation p.R316I 0.33 tolerated(0.57) benign(0.003) TCGA-BR-8680-01 7 57529466 57529466 G A ZNF716 Silent p.E433E 0.20 TCGA-BR-8680-01 7 57529580 57529580 A C ZNF716 Missense_Mutation p.Q471H 0.15 deleterious(0) benign(0.001) TCGA-BR-8680-01 7 5780605 5780605 G A RNF216 Missense_Mutation p.T348M 0.32 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 7 5792512 5792512 C T RNF216 Missense_Mutation p.E56K 0.31 deleterious_low_confidence(0.03) benign(0.304) TCGA-BR-8680-01 7 63538506 63538506 G T ZNF727 Missense_Mutation p.R360I 0.27 tolerated(0.41) probably_damaging(0.967) TCGA-BR-8680-01 7 63538809 63538809 T C ZNF727 Missense_Mutation p.F461S 0.44 deleterious(0) possibly_damaging(0.902) TCGA-BR-8680-01 7 63797318 63797318 C T ZNF736 Missense_Mutation p.P62S 0.21 tolerated(0.06) benign(0.27) TCGA-BR-8680-01 7 63982024 63982024 T G ZNF680 Missense_Mutation p.K370Q 0.31 tolerated(0.17) benign(0.32) TCGA-BR-8680-01 7 64167547 64167547 A G ZNF107 Missense_Mutation p.K289E 0.30 tolerated(0.57) benign(0.012) TCGA-BR-8680-01 7 64167657 64167657 G T ZNF107 Missense_Mutation p.E325D 0.20 deleterious(0.03) benign(0.003) TCGA-BR-8680-01 7 64389307 64389307 A C ZNF273 Missense_Mutation p.K534T 0.35 tolerated(0.48) benign(0.037) TCGA-BR-8680-01 7 64438459 64438459 C A ZNF117 3'UTR 0.30 TCGA-BR-8680-01 7 64439395 64439395 C A ZNF117 Missense_Mutation p.R185I 0.10 tolerated(0.34) benign(0.008) TCGA-BR-8680-01 7 64639744 64639744 G A INTS4L1 RNA 0.38 TCGA-BR-8680-01 7 64852845 64852845 G T ZNF92 Nonsense_Mutation p.E12* 0.31 TCGA-BR-8680-01 7 64864067 64864067 G A ZNF92 Missense_Mutation p.G347D 0.27 deleterious(0.03) benign(0.141) TCGA-BR-8680-01 7 64864785 64864785 C T ZNF92 Silent p.T586T 0.21 TCGA-BR-8680-01 7 65444478 65444478 T G GUSB Missense_Mutation p.Y211S 0.35 deleterious(0) probably_damaging(0.998) TCGA-BR-8680-01 7 66290287 66290287 T G GTF2IRD1P1 RNA 0.40 TCGA-BR-8680-01 7 66304891 66304891 G A GTF2IRD1P1 RNA 0.38 TCGA-BR-8680-01 7 6731035 6731035 C A ZNF12 Missense_Mutation p.R513I 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-BR-8680-01 7 6781334 6781334 A C PMS2CL RNA 0.31 TCGA-BR-8680-01 7 6805365 6805365 C T RSPH10B2 Missense_Mutation p.T201M 0.16 tolerated(0.05) probably_damaging(0.97) TCGA-BR-8680-01 7 6851624 6851624 T A CCZ1B Missense_Mutation p.T305S 0.31 tolerated(0.65) benign(0.032) TCGA-BR-8680-01 7 70228040 70228040 G A AUTS2 Silent p.P309P 0.37 TCGA-BR-8680-01 7 70252212 70252212 G A AUTS2 Missense_Mutation p.G776S 0.38 deleterious(0.04) benign(0.351) TCGA-BR-8680-01 7 71177108 71177108 A G WBSCR17 Missense_Mutation p.T592A 0.31 tolerated(0.12) benign(0.016) TCGA-BR-8680-01 7 72081692 72081692 C T TYW1B Missense_Mutation p.E210K 0.29 tolerated(0.32) probably_damaging(0.916) TCGA-BR-8680-01 7 72657577 72657577 G A GTF2IRD2P1 RNA 0.34 TCGA-BR-8680-01 7 72657673 72657673 G A GTF2IRD2P1 RNA 0.32 TCGA-BR-8680-01 7 7278086 7278086 G T C1GALT1 Missense_Mutation p.D141Y 0.30 deleterious(0) probably_damaging(0.918) TCGA-BR-8680-01 7 7278461 7278461 T A C1GALT1 Missense_Mutation p.F266I 0.34 deleterious(0) probably_damaging(0.998) TCGA-BR-8680-01 7 72863979 72863979 T G BAZ1B Missense_Mutation p.K1207N 0.45 deleterious(0.03) probably_damaging(0.999) TCGA-BR-8680-01 7 73008305 73008305 T C MLXIPL Missense_Mutation p.N817D 0.38 tolerated(0.07) possibly_damaging(0.599) TCGA-BR-8680-01 7 73279635 73279635 G T WBSCR28 Missense_Mutation p.D129Y 0.31 deleterious(0) probably_damaging(0.979) TCGA-BR-8680-01 7 73604598 73604598 C A EIF4H Missense_Mutation p.S144Y 0.33 deleterious(0.05) benign(0.087) TCGA-BR-8680-01 7 73960133 73960133 C T GTF2IRD1 Nonsense_Mutation p.R608* 0.38 TCGA-BR-8680-01 7 74015485 74015485 C T GTF2IRD1 Missense_Mutation p.S947L 0.25 deleterious(0) benign(0.004) TCGA-BR-8680-01 7 74211875 74211875 G T GTF2IRD2 Nonsense_Mutation p.S659* 0.38 TCGA-BR-8680-01 7 74212283 74212283 A G GTF2IRD2 Missense_Mutation p.V523A 0.20 tolerated(1) benign(0.002) TCGA-BR-8680-01 7 74565059 74565059 T C GTF2IRD2B Silent p.L936L 0.15 TCGA-BR-8680-01 7 7493131 7493131 T G COL28A1 Missense_Mutation p.Q460H 0.27 deleterious(0) probably_damaging(0.991) TCGA-BR-8680-01 7 75052307 75052307 C T POM121C Missense_Mutation p.D410N 0.33 tolerated(0.11) benign(0.111) TCGA-BR-8680-01 7 76916866 76916866 A C CCDC146 Missense_Mutation p.K796T 0.22 deleterious(0) probably_damaging(0.962) TCGA-BR-8680-01 7 76922474 76922474 G A CCDC146 Missense_Mutation p.R874Q 0.29 deleterious(0.01) possibly_damaging(0.782) TCGA-BR-8680-01 7 77268548 77268548 G A PTPN12 Missense_Mutation p.R765Q 0.28 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BR-8680-01 7 77423307 77423307 G T TMEM60 Silent p.V128V 0.31 TCGA-BR-8680-01 7 77789394 77789394 G A MAGI2 Silent p.F931F 0.35 TCGA-BR-8680-01 7 77789413 77789413 C T MAGI2 Missense_Mutation p.R925H 0.29 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 7 77830508 77830508 A C MAGI2 Missense_Mutation p.F684V 0.28 tolerated(0.51) benign(0.116) TCGA-BR-8680-01 7 79082773 79082773 C A MAGI2 5'UTR 0.42 TCGA-BR-8680-01 7 80418725 80418725 C T SEMA3C Silent p.R417R 0.32 TCGA-BR-8680-01 7 8126294 8126294 C A GLCCI1 3'UTR 0.45 TCGA-BR-8680-01 7 81381329 81381329 A G HGF Intron 0.41 TCGA-BR-8680-01 7 82072858 82072858 G A CACNA2D1 5'UTR 0.33 TCGA-BR-8680-01 7 82390067 82390067 G T PCLO Missense_Mutation p.S5059Y 0.33 unknown(0) TCGA-BR-8680-01 7 82578855 82578855 C T PCLO Silent p.K3683K 0.33 TCGA-BR-8680-01 7 82579967 82579967 G A PCLO Missense_Mutation p.R3313W 0.11 unknown(0) TCGA-BR-8680-01 7 82583601 82583601 G A PCLO Missense_Mutation p.S2223F 0.24 unknown(0) TCGA-BR-8680-01 7 82764042 82764042 C T PCLO Missense_Mutation p.A942T 0.28 unknown(0) TCGA-BR-8680-01 7 82764221 82764221 C T PCLO Missense_Mutation p.R882Q 0.27 unknown(0) TCGA-BR-8680-01 7 83032082 83032082 G A SEMA3E Nonsense_Mutation p.R337* 0.33 TCGA-BR-8680-01 7 83606510 83606510 C T SEMA3A Missense_Mutation p.R552H 0.21 deleterious(0) probably_damaging(0.998) TCGA-BR-8680-01 7 83764139 83764139 C T SEMA3A Missense_Mutation p.D81N 0.39 tolerated(0.58) benign(0.003) TCGA-BR-8680-01 7 86416107 86416107 C T GRM3 Silent p.F333F 0.30 TCGA-BR-8680-01 7 86468223 86468223 C T GRM3 Nonsense_Mutation p.R465* 0.37 TCGA-BR-8680-01 7 86521160 86521160 T G KIAA1324L Missense_Mutation p.K970N 0.40 deleterious(0.02) probably_damaging(0.919) TCGA-BR-8680-01 7 87005144 87005144 G A CROT Missense_Mutation p.A279T 0.11 tolerated(0.41) benign(0.03) TCGA-BR-8680-01 7 87020970 87020970 G A CROT Missense_Mutation p.R484Q 0.17 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 7 87092105 87092105 A C ABCB4 Missense_Mutation p.F85L 0.07 tolerated(0.12) benign(0.162) TCGA-BR-8680-01 7 87144576 87144576 G A ABCB1 Missense_Mutation p.R1085W 0.32 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 7 87150189 87150189 C T ABCB1 Missense_Mutation p.A897T 0.38 tolerated(0.14) possibly_damaging(0.674) TCGA-BR-8680-01 7 87178674 87178674 G A ABCB1 Missense_Mutation p.A572V 0.33 deleterious(0) probably_damaging(0.986) TCGA-BR-8680-01 7 87436797 87436797 A G RUNDC3B Missense_Mutation p.T373A 0.32 tolerated(0.15) benign(0.028) TCGA-BR-8680-01 7 87459269 87459269 T G RUNDC3B Missense_Mutation p.L449R 0.28 deleterious(0) probably_damaging(0.98) TCGA-BR-8680-01 7 87759747 87759747 G A ADAM22 Silent p.A266A 0.26 TCGA-BR-8680-01 7 87811315 87811315 T G ADAM22 Missense_Mutation p.F851C 0.32 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-BR-8680-01 7 87825861 87825861 A C ADAM22 3'UTR 0.26 TCGA-BR-8680-01 7 87840206 87840206 T C SRI Silent p.S80S 0.55 TCGA-BR-8680-01 7 87912071 87912071 C T STEAP4 Missense_Mutation p.R290Q 0.34 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 7 88389247 88389247 C T ZNF804B 5'UTR 0.32 TCGA-BR-8680-01 7 88962747 88962747 T A ZNF804B Missense_Mutation p.F151I 0.28 deleterious(0.03) possibly_damaging(0.844) TCGA-BR-8680-01 7 88964416 88964416 G T ZNF804B Missense_Mutation p.R707I 0.30 tolerated(0.19) benign(0.051) TCGA-BR-8680-01 7 88965794 88965794 G A ZNF804B Silent p.Q1166Q 0.29 TCGA-BR-8680-01 7 88966008 88966008 C A ZNF804B Missense_Mutation p.L1238I 0.31 deleterious(0.01) possibly_damaging(0.629) TCGA-BR-8680-01 7 89790273 89790273 T G STEAP1 Missense_Mutation p.I80S 0.32 tolerated(0.06) benign(0.355) TCGA-BR-8680-01 7 91632062 91632062 A C AKAP9 Missense_Mutation p.K944T 0.40 probably_damaging(0.999) TCGA-BR-8680-01 7 91672072 91672072 T G AKAP9 Missense_Mutation p.L1717V 0.31 benign(0.117) TCGA-BR-8680-01 7 91699510 91699510 C A AKAP9 Missense_Mutation p.T2166N 0.27 benign(0.005) TCGA-BR-8680-01 7 91707053 91707053 C T AKAP9 Missense_Mutation p.A2270V 0.26 benign(0.005) TCGA-BR-8680-01 7 91708440 91708440 A G AKAP9 Missense_Mutation p.I2331M 0.44 possibly_damaging(0.844) TCGA-BR-8680-01 7 92098549 92098549 G A ERVW-1 Nonsense_Mutation p.R383* 0.45 TCGA-BR-8680-01 7 92143246 92143246 T G PEX1 Missense_Mutation p.E425D 0.30 tolerated(0.34) benign(0.008) TCGA-BR-8680-01 7 92247479 92247479 A C CDK6 Silent p.V247V 0.13 TCGA-BR-8680-01 7 92762803 92762803 G A SAMD9L Nonsense_Mutation p.R828* 0.67 TCGA-BR-8680-01 7 92762825 92762825 G A SAMD9L Silent p.S820S 0.33 TCGA-BR-8680-01 7 92923915 92923915 G T CCDC132 Missense_Mutation p.K378N 0.33 tolerated(0.13) benign(0.057) TCGA-BR-8680-01 7 93520055 93520055 C T TFPI2 5'UTR 0.38 TCGA-BR-8680-01 7 94043236 94043236 C T COL1A2 Missense_Mutation p.P548S 0.36 unknown(0) TCGA-BR-8680-01 7 94057135 94057135 C A COL1A2 Missense_Mutation p.S1155Y 0.32 unknown(0) TCGA-BR-8680-01 7 94293682 94293682 G A PEG10 Missense_Mutation p.E272K 0.38 deleterious(0.02) benign(0.28) TCGA-BR-8680-01 7 94540365 94540365 G A PPP1R9A Missense_Mutation p.D314N 0.20 tolerated(0.32) benign(0.005) TCGA-BR-8680-01 7 94913409 94913409 C T PPP1R9A Missense_Mutation p.P1126S 0.35 deleterious(0.01) possibly_damaging(0.557) TCGA-BR-8680-01 7 95001600 95001600 T G PON3 Missense_Mutation p.K84N 0.43 deleterious(0.02) benign(0.1) TCGA-BR-8680-01 7 95223071 95223071 C T PDK4 Missense_Mutation p.S95N 0.30 deleterious(0) probably_damaging(0.985) TCGA-BR-8680-01 7 95224379 95224379 C T PDK4 Silent p.P76P 0.35 TCGA-BR-8680-01 7 97488685 97488685 C T ASNS Silent p.A171A 0.30 TCGA-BR-8680-01 7 97493736 97493736 C T ASNS Missense_Mutation p.G108R 0.29 tolerated(0.35) benign(0.169) TCGA-BR-8680-01 7 98508728 98508728 A G TRRAP Missense_Mutation p.Y614C 0.39 possibly_damaging(0.693) TCGA-BR-8680-01 7 98591318 98591318 C T TRRAP Silent p.I3321I 0.43 TCGA-BR-8680-01 7 98601919 98601919 C T TRRAP Silent p.F3458F 0.27 TCGA-BR-8680-01 7 98608819 98608819 T G TRRAP Missense_Mutation p.F3681V 0.37 benign(0.1) TCGA-BR-8680-01 7 98655153 98655153 C T SMURF1 Silent p.S75S 0.25 TCGA-BR-8680-01 7 98995514 98995514 G A PDAP1 Missense_Mutation p.A153V 0.38 deleterious(0.01) probably_damaging(0.918) TCGA-BR-8680-01 7 99015106 99015106 A C BUD31 Missense_Mutation p.K91T 0.26 deleterious(0) probably_damaging(0.948) TCGA-BR-8680-01 7 99171030 99171030 G T ZNF655 Missense_Mutation p.E468D 0.06 deleterious(0.01) benign(0) TCGA-BR-8680-01 7 99171035 99171035 C T ZNF655 Missense_Mutation p.S470L 0.27 deleterious(0.01) possibly_damaging(0.519) TCGA-BR-8680-01 7 99311124 99311124 G A CYP3A7 Missense_Mutation p.S278F 0.24 deleterious(0.01) probably_damaging(0.987) TCGA-BR-8680-01 7 99447290 99447290 T A CYP3A43 Missense_Mutation p.F215I 0.48 tolerated(0.07) benign(0.03) TCGA-BR-8680-01 7 99757915 99757915 T C GAL3ST4 Missense_Mutation p.D366G 0.38 deleterious(0.01) probably_damaging(1) TCGA-BR-8680-01 7 99768093 99768093 G A GPC2 Silent p.S500S 0.28 TCGA-BR-8680-01 7 99798363 99798363 G A GATS 3'UTR 0.27 TCGA-BR-8680-01 8 100168882 100168882 T C VPS13B Missense_Mutation p.Y707H 0.34 deleterious(0) probably_damaging(0.969) TCGA-BR-8680-01 8 100493895 100493895 T C VPS13B Silent p.N1245N 0.05 TCGA-BR-8680-01 8 100568703 100568703 C T VPS13B Nonsense_Mutation p.R1616* 0.24 TCGA-BR-8680-01 8 101016202 101016202 T G RGS22 Missense_Mutation p.K860T 0.32 deleterious(0.01) benign(0.202) TCGA-BR-8680-01 8 101145926 101145926 T G FBXO43 3'UTR 0.41 TCGA-BR-8680-01 8 101174630 101174630 A C SPAG1 Missense_Mutation p.K41T 0.41 deleterious(0) probably_damaging(0.989) TCGA-BR-8680-01 8 101178199 101178199 A C SPAG1 Missense_Mutation p.K100Q 0.36 tolerated(0.07) probably_damaging(0.959) TCGA-BR-8680-01 8 101196205 101196205 T C SPAG1 Silent p.C170C 0.25 TCGA-BR-8680-01 8 101243400 101243400 A C SPAG1 Missense_Mutation p.K624N 0.27 tolerated(0.09) possibly_damaging(0.552) TCGA-BR-8680-01 8 101540171 101540171 G T ANKRD46 Silent p.V124V 0.27 TCGA-BR-8680-01 8 103357626 103357626 C T UBR5 Missense_Mutation p.R295Q 0.43 tolerated(0.1) benign(0.044) TCGA-BR-8680-01 8 103572953 103572953 C T ODF1 Silent p.I198I 0.18 TCGA-BR-8680-01 8 10396280 10396280 T C PRSS55 Silent p.L346L 0.44 TCGA-BR-8680-01 8 104412535 104412535 C T SLC25A32 3'UTR 0.42 TCGA-BR-8680-01 8 10466733 10466733 G A RP1L1 Silent p.G1625G 0.61 TCGA-BR-8680-01 8 10469605 10469605 G A RP1L1 Missense_Mutation p.S668F 0.47 benign(0.402) TCGA-BR-8680-01 8 104831719 104831719 A G RIMS2 Intron 0.32 TCGA-BR-8680-01 8 104897838 104897838 G A RIMS2 Silent p.P337P 0.42 TCGA-BR-8680-01 8 104922574 104922574 A C RIMS2 Intron 0.30 TCGA-BR-8680-01 8 105105866 105105866 A C RIMS2 Intron 0.20 TCGA-BR-8680-01 8 105261818 105261818 T C RIMS2 Splice_Site p.X1231_splice 0.62 TCGA-BR-8680-01 8 105263353 105263353 T G RIMS2 Missense_Mutation p.L1265V 0.29 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-BR-8680-01 8 105503537 105503537 A C LRP12 Missense_Mutation p.F648L 0.37 tolerated(0.89) benign(0.003) TCGA-BR-8680-01 8 110255496 110255496 A C NUDCD1 Missense_Mutation p.F498L 0.36 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 8 110448648 110448648 T G PKHD1L1 Missense_Mutation p.I1196S 0.19 tolerated(0.11) benign(0.033) TCGA-BR-8680-01 8 110477432 110477432 G A PKHD1L1 Missense_Mutation p.E2791K 0.42 tolerated(0.08) probably_damaging(0.972) TCGA-BR-8680-01 8 110534550 110534550 A G PKHD1L1 Missense_Mutation p.D4056G 0.35 deleterious(0.01) probably_damaging(0.972) TCGA-BR-8680-01 8 110590245 110590245 G A SYBU Missense_Mutation p.R246C 0.28 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 8 113516067 113516067 G A CSMD3 Missense_Mutation p.R1679W 0.28 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 8 113933929 113933929 G A CSMD3 Silent p.G520G 0.34 TCGA-BR-8680-01 8 11400775 11400775 G A BLK Silent p.P14P 0.33 TCGA-BR-8680-01 8 114186077 114186077 C T CSMD3 Missense_Mutation p.D195N 0.46 tolerated(1) possibly_damaging(0.862) TCGA-BR-8680-01 8 116631976 116631976 C A TRPS1 Nonsense_Mutation p.E117* 0.33 TCGA-BR-8680-01 8 117954953 117954953 G A AARD 3'UTR 0.31 TCGA-BR-8680-01 8 118147548 118147548 G A SLC30A8 5'Flank 0.27 TCGA-BR-8680-01 8 118159295 118159295 G A SLC30A8 Silent p.K58K 0.26 TCGA-BR-8680-01 8 118552221 118552221 G A MED30 3'UTR 0.32 TCGA-BR-8680-01 8 118834767 118834767 A C EXT1 Missense_Mutation p.L452V 0.30 deleterious(0) possibly_damaging(0.751) TCGA-BR-8680-01 8 118834821 118834821 T G EXT1 Missense_Mutation p.I434L 0.40 tolerated(0.47) benign(0.002) TCGA-BR-8680-01 8 119123272 119123272 T G EXT1 Missense_Mutation p.K5T 0.24 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 8 11994797 11994797 C T USP17L2 Silent p.S491S 0.67 TCGA-BR-8680-01 8 120865430 120865430 C T DSCC1 Missense_Mutation p.E70K 0.48 deleterious(0.01) benign(0.311) TCGA-BR-8680-01 8 121210070 121210070 G A COL14A1 Missense_Mutation p.D205N 0.26 tolerated(0.05) probably_damaging(1) TCGA-BR-8680-01 8 121216025 121216025 G A COL14A1 Missense_Mutation p.E319K 0.40 deleterious(0.01) possibly_damaging(0.86) TCGA-BR-8680-01 8 121296018 121296018 G A COL14A1 Splice_Site p.X1323_splice 0.23 TCGA-BR-8680-01 8 121823712 121823712 C T SNTB1 Silent p.G124G 0.32 TCGA-BR-8680-01 8 121823882 121823882 A G SNTB1 Missense_Mutation p.F68L 0.30 tolerated(0.64) benign(0.001) TCGA-BR-8680-01 8 123964589 123964589 C A ZHX2 Missense_Mutation p.S280Y 0.34 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 8 124027820 124027820 C T DERL1 Missense_Mutation p.R208H 0.28 deleterious(0.05) benign(0.005) TCGA-BR-8680-01 8 124096519 124096519 A G TBC1D31 Missense_Mutation p.D153G 0.34 deleterious(0) probably_damaging(0.99) TCGA-BR-8680-01 8 124546990 124546990 C T FBXO32 Missense_Mutation p.A61T 0.30 tolerated(0.3) benign(0.392) TCGA-BR-8680-01 8 124811872 124811872 G A FAM91A1 Missense_Mutation p.R558Q 0.34 tolerated(0.08) benign(0.422) TCGA-BR-8680-01 8 124822600 124822600 A C FAM91A1 Intron 0.22 TCGA-BR-8680-01 8 125113491 125113491 C A FER1L6 Missense_Mutation p.F1679L 0.26 deleterious(0.01) benign(0.167) TCGA-BR-8680-01 8 125464172 125464172 T C TRMT12 Missense_Mutation p.I335T 0.30 deleterious(0) probably_damaging(0.939) TCGA-BR-8680-01 8 126194403 126194403 T G NSMCE2 Missense_Mutation p.F108C 0.38 deleterious(0) possibly_damaging(0.885) TCGA-BR-8680-01 8 126445962 126445962 T C TRIB1 Intron 0.29 TCGA-BR-8680-01 8 12947955 12947955 G A DLC1 Missense_Mutation p.R1294C 0.46 tolerated(0.15) probably_damaging(0.998) TCGA-BR-8680-01 8 130760546 130760546 C A GSDMC 3'UTR 0.35 TCGA-BR-8680-01 8 131073177 131073177 G A ASAP1 Missense_Mutation p.A947V 0.33 tolerated(0.54) benign(0.075) TCGA-BR-8680-01 8 132989322 132989322 C A EFR3A Missense_Mutation p.L437M 0.32 deleterious(0.04) possibly_damaging(0.684) TCGA-BR-8680-01 8 133961170 133961170 G T TG Missense_Mutation p.D1795Y 0.33 deleterious(0.01) benign(0.001) TCGA-BR-8680-01 8 134063099 134063099 C T SLA Silent p.P81P 0.29 TCGA-BR-8680-01 8 134474127 134474127 G T ST3GAL1 Silent p.V280V 0.34 TCGA-BR-8680-01 8 139163661 139163661 G A FAM135B Silent p.T1019T 0.31 TCGA-BR-8680-01 8 139701163 139701163 C A COL22A1 Missense_Mutation p.E953D 0.21 unknown(0) TCGA-BR-8680-01 8 141749153 141749153 G A PTK2 Nonsense_Mutation p.R597* 0.27 TCGA-BR-8680-01 8 142154302 142154302 G T DENND3 Missense_Mutation p.D147Y 0.41 deleterious(0) probably_damaging(0.936) TCGA-BR-8680-01 8 142154308 142154308 G A DENND3 Missense_Mutation p.A149T 0.30 tolerated(0.12) probably_damaging(0.924) TCGA-BR-8680-01 8 142238452 142238452 C T SLC45A4 5'UTR 0.41 TCGA-BR-8680-01 8 142445254 142445254 G A PTP4A3 3'Flank 0.52 TCGA-BR-8680-01 8 143614773 143614773 C T BAI1 Silent p.F1172F 0.23 TCGA-BR-8680-01 8 143921918 143921918 G A GML Missense_Mutation p.R22H 0.27 tolerated(0.12) benign(0.001) TCGA-BR-8680-01 8 143958486 143958486 C T CYP11B1 Missense_Mutation p.S183N 0.20 deleterious(0.01) benign(0.248) TCGA-BR-8680-01 8 143961148 143961148 C T CYP11B1 Missense_Mutation p.A28T 0.24 deleterious(0.02) possibly_damaging(0.839) TCGA-BR-8680-01 8 143996630 143996630 G A CYP11B2 Missense_Mutation p.R143W 0.40 tolerated(0.1) benign(0.075) TCGA-BR-8680-01 8 143999256 143999256 T G CYP11B2 Translation_Start_Site p.M1? 0.20 deleterious(0) probably_damaging(0.989) TCGA-BR-8680-01 8 144240240 144240240 C T LY6H Missense_Mutation p.R77Q 0.32 tolerated(0.18) benign(0.066) TCGA-BR-8680-01 8 144461522 144461522 G A RHPN1 Silent p.A263A 0.55 TCGA-BR-8680-01 8 144651955 144651955 C T MROH6 Missense_Mutation p.R405Q 0.33 deleterious(0.02) probably_damaging(0.946) TCGA-BR-8680-01 8 144690248 144690248 T C PYCRL Missense_Mutation p.N59S 0.32 tolerated(0.18) possibly_damaging(0.499) TCGA-BR-8680-01 8 144940819 144940819 T C EPPK1 Silent p.E2201E 0.37 TCGA-BR-8680-01 8 145223230 145223230 G A MROH1 Missense_Mutation p.D19N 0.32 deleterious(0) probably_damaging(0.966) TCGA-BR-8680-01 8 146202457 146202457 A C ZNF252P RNA 0.54 TCGA-BR-8680-01 8 15588214 15588214 G T TUSC3 Nonsense_Mutation p.E280* 0.40 TCGA-BR-8680-01 8 16026226 16026226 C A MSR1 Missense_Mutation p.R124I 0.42 tolerated(0.08) probably_damaging(0.953) TCGA-BR-8680-01 8 16026290 16026290 C A MSR1 Missense_Mutation p.D103Y 0.42 tolerated(0.14) benign(0.287) TCGA-BR-8680-01 8 17094768 17094768 A C CNOT7 Silent p.T142T 0.52 TCGA-BR-8680-01 8 17142068 17142068 C A VPS37A Missense_Mutation p.F352L 0.49 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 8 17613066 17613066 T G MTUS1 Missense_Mutation p.K84T 0.51 tolerated(0.05) benign(0.028) TCGA-BR-8680-01 8 1842726 1842726 C A ARHGEF10 Silent p.V476V 0.42 TCGA-BR-8680-01 8 18656857 18656857 A G PSD3 Missense_Mutation p.V677A 0.53 tolerated(0.18) probably_damaging(0.999) TCGA-BR-8680-01 8 1904965 1904965 G A ARHGEF10 Missense_Mutation p.V1191I 0.40 tolerated(0.2) benign(0.019) TCGA-BR-8680-01 8 19218776 19218776 G A SH2D4A Silent p.T219T 0.56 TCGA-BR-8680-01 8 19315279 19315279 G A CSGALNACT1 Intron 0.46 TCGA-BR-8680-01 8 19811702 19811702 T G LPL Missense_Mutation p.F205V 0.52 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 8 19813404 19813404 C T LPL Silent p.I276I 0.54 TCGA-BR-8680-01 8 2037977 2037977 G A MYOM2 Silent p.S597S 0.54 TCGA-BR-8680-01 8 21833868 21833868 C T XPO7 Missense_Mutation p.A200V 0.44 tolerated(0.4) benign(0.001) TCGA-BR-8680-01 8 21848324 21848324 C T XPO7 Silent p.S645S 0.50 TCGA-BR-8680-01 8 22006386 22006386 T C LGI3 Missense_Mutation p.T312A 0.48 tolerated(1) benign(0.003) TCGA-BR-8680-01 8 22172631 22172631 T C PIWIL2 Silent p.G727G 0.54 TCGA-BR-8680-01 8 22974562 22974562 G T TNFRSF10C 3'UTR 0.56 TCGA-BR-8680-01 8 22974674 22974674 C T TNFRSF10C 3'UTR 0.59 TCGA-BR-8680-01 8 24254940 24254940 C T ADAMDEC1 Nonsense_Mutation p.R200* 0.54 TCGA-BR-8680-01 8 25227129 25227129 G A DOCK5 Missense_Mutation p.E1166K 0.60 deleterious(0.03) benign(0.377) TCGA-BR-8680-01 8 25296817 25296817 T C KCTD9 Silent p.V159V 0.44 TCGA-BR-8680-01 8 26238429 26238429 C A BNIP3L 5'Flank 0.43 TCGA-BR-8680-01 8 27300491 27300491 C T PTK2B Silent p.P713P 0.65 TCGA-BR-8680-01 8 2824263 2824263 A G CSMD1 Missense_Mutation p.S2977P 0.53 possibly_damaging(0.868) TCGA-BR-8680-01 8 30699651 30699651 G A TEX15 Missense_Mutation p.P2295S 0.56 tolerated(0.25) benign(0.04) TCGA-BR-8680-01 8 30701056 30701056 T G TEX15 Missense_Mutation p.E1826D 0.39 deleterious(0) probably_damaging(0.996) TCGA-BR-8680-01 8 30703661 30703661 G T TEX15 Nonsense_Mutation p.S958* 0.47 TCGA-BR-8680-01 8 3205548 3205548 C T CSMD1 Missense_Mutation p.R1147Q 0.62 benign(0.009) TCGA-BR-8680-01 8 37734802 37734802 C A RAB11FIP1 Missense_Mutation p.K213N 0.47 deleterious(0) possibly_damaging(0.789) TCGA-BR-8680-01 8 38090720 38090720 G A DDHD2 Missense_Mutation p.A70T 0.56 tolerated(0.25) benign(0.26) TCGA-BR-8680-01 8 41550298 41550298 G A ANK1 Silent p.F1283F 0.35 TCGA-BR-8680-01 8 41789996 41789996 C T KAT6A Missense_Mutation p.M1914I 0.26 unknown(0) TCGA-BR-8680-01 8 41794925 41794925 G A KAT6A Silent p.I1067I 0.31 TCGA-BR-8680-01 8 41832248 41832248 G A KAT6A Missense_Mutation p.R486C 0.32 probably_damaging(0.97) TCGA-BR-8680-01 8 42023053 42023053 C T AP3M2 Silent p.L260L 0.33 TCGA-BR-8680-01 8 42129664 42129664 G A IKBKB Missense_Mutation p.E16K 0.27 tolerated(0.07) benign(0.129) TCGA-BR-8680-01 8 42587006 42587006 A C CHRNB3 Missense_Mutation p.I186L 0.18 tolerated(0.14) benign(0.003) TCGA-BR-8680-01 8 42608314 42608314 A C CHRNA6 3'UTR 0.33 TCGA-BR-8680-01 8 42612120 42612120 G A CHRNA6 Missense_Mutation p.R109C 0.37 deleterious(0.01) probably_damaging(0.98) TCGA-BR-8680-01 8 42620276 42620276 G A CHRNA6 Missense_Mutation p.P51S 0.36 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 8 42761366 42761366 G A HOOK3 Silent p.T36T 0.35 TCGA-BR-8680-01 8 42828481 42828481 A C HOOK3 Missense_Mutation p.K391T 0.36 tolerated(0.15) possibly_damaging(0.575) TCGA-BR-8680-01 8 42865454 42865454 A C HOOK3 Missense_Mutation p.K582T 0.23 deleterious(0.03) benign(0.322) TCGA-BR-8680-01 8 43054771 43054771 G A HGSNAT 3'UTR 0.38 TCGA-BR-8680-01 8 43197428 43197428 G T POTEA RNA 0.30 TCGA-BR-8680-01 8 48352951 48352951 C T SPIDR Missense_Mutation p.A315V 0.29 deleterious(0) probably_damaging(0.998) TCGA-BR-8680-01 8 48769854 48769854 G A PRKDC Missense_Mutation p.R2157C 0.31 benign(0.427) TCGA-BR-8680-01 8 48794568 48794568 G T PRKDC Missense_Mutation p.L1622M 0.28 possibly_damaging(0.88) TCGA-BR-8680-01 8 48815210 48815210 A C PRKDC Missense_Mutation p.L1063R 0.26 probably_damaging(0.992) TCGA-BR-8680-01 8 48885587 48885587 C T MCM4 Missense_Mutation p.P700L 0.34 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 8 49642308 49642308 C A EFCAB1 Missense_Mutation p.D148Y 0.32 deleterious(0) probably_damaging(0.998) TCGA-BR-8680-01 8 49832466 49832466 C A SNAI2 Missense_Mutation p.R205I 0.35 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 8 52252189 52252189 C A PXDNL Nonsense_Mutation p.E1381* 0.32 TCGA-BR-8680-01 8 52744080 52744080 A G PCMTD1 Silent p.N210N 0.28 TCGA-BR-8680-01 8 53055523 53055523 A C ST18 Missense_Mutation p.L712R 0.07 deleterious(0.02) probably_damaging(0.94) TCGA-BR-8680-01 8 53454968 53454968 G T FAM150A Missense_Mutation p.F76L 0.24 deleterious(0.05) benign(0.178) TCGA-BR-8680-01 8 53573751 53573751 G T RB1CC1 Silent p.V483V 0.34 TCGA-BR-8680-01 8 53596199 53596199 C T RB1CC1 Silent p.S93S 0.46 TCGA-BR-8680-01 8 54899528 54899528 T C TCEA1 Splice_Site p.X175_splice 0.29 TCGA-BR-8680-01 8 54960520 54960520 T G LYPLA1 3'UTR 0.26 TCGA-BR-8680-01 8 55539553 55539553 A C RP1 Missense_Mutation p.K1037N 0.35 tolerated(0.07) benign(0.014) TCGA-BR-8680-01 8 55540960 55540960 G A RP1 Silent p.L1506L 0.09 TCGA-BR-8680-01 8 55542456 55542456 G A RP1 Missense_Mutation p.R2005K 0.38 tolerated(0.28) benign(0.01) TCGA-BR-8680-01 8 56270279 56270279 G A XKR4 Missense_Mutation p.S283N 0.19 tolerated(0.79) benign(0.412) TCGA-BR-8680-01 8 56985618 56985618 A C RPS20 Intron 0.39 TCGA-BR-8680-01 8 57876275 57876275 A G IMPAD1 3'UTR 0.41 TCGA-BR-8680-01 8 59409434 59409434 C T CYP7A1 Missense_Mutation p.D213N 0.35 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 8 59488523 59488523 G A SDCBP Missense_Mutation p.G102E 0.34 deleterious(0) probably_damaging(0.977) TCGA-BR-8680-01 8 61121466 61121466 G A CA8 Nonsense_Mutation p.R251* 0.26 TCGA-BR-8680-01 8 61693639 61693639 G A CHD7 Silent p.K582K 0.29 TCGA-BR-8680-01 8 61769092 61769092 G A CHD7 Missense_Mutation p.R2418Q 0.31 benign(0.381) TCGA-BR-8680-01 8 62465639 62465639 C A ASPH Missense_Mutation p.R526I 0.04 deleterious(0) probably_damaging(0.957) TCGA-BR-8680-01 8 62563669 62563669 C T ASPH Missense_Mutation p.E144K 0.35 tolerated_low_confidence(0.16) benign(0.096) TCGA-BR-8680-01 8 66539626 66539626 G T ARMC1 Missense_Mutation p.S3Y 0.33 deleterious_low_confidence(0.01) benign(0.099) TCGA-BR-8680-01 8 67047359 67047359 C T TRIM55 Missense_Mutation p.A159V 0.33 deleterious(0.02) probably_damaging(0.995) TCGA-BR-8680-01 8 67086844 67086844 C A TRIM55 3'UTR 0.31 TCGA-BR-8680-01 8 67341435 67341435 C T RRS1 Silent p.R23R 0.20 TCGA-BR-8680-01 8 67578876 67578876 A G VCPIP1 Silent p.V106V 0.08 TCGA-BR-8680-01 8 67591956 67591956 G A C8orf44 Missense_Mutation p.V83I 0.35 tolerated_low_confidence(0.05) possibly_damaging(0.621) TCGA-BR-8680-01 8 6793498 6793498 G A DEFA4 3'UTR 0.51 TCGA-BR-8680-01 8 67974198 67974198 T C COPS5 Missense_Mutation p.T12A 0.36 tolerated(0.19) benign(0.015) TCGA-BR-8680-01 8 68007713 68007713 A C CSPP1 Missense_Mutation p.E232D 0.43 tolerated(0.17) benign(0.018) TCGA-BR-8680-01 8 68030586 68030586 G A CSPP1 Missense_Mutation p.D529N 0.34 deleterious(0.01) benign(0.437) TCGA-BR-8680-01 8 68130137 68130137 C T ARFGEF1 Missense_Mutation p.R1498Q 0.35 deleterious(0.05) probably_damaging(0.988) TCGA-BR-8680-01 8 68208748 68208748 T G ARFGEF1 Missense_Mutation p.K186T 0.40 deleterious(0) possibly_damaging(0.508) TCGA-BR-8680-01 8 68395866 68395866 G A CPA6 Intron 0.34 TCGA-BR-8680-01 8 68992692 68992692 G A PREX2 Missense_Mutation p.E553K 0.33 tolerated(0.05) possibly_damaging(0.615) TCGA-BR-8680-01 8 69136820 69136820 G T PREX2 Missense_Mutation p.K1578N 0.30 deleterious(0) possibly_damaging(0.601) TCGA-BR-8680-01 8 69633596 69633596 A G C8orf34 Missense_Mutation p.D443G 0.33 tolerated(0.1) benign(0.013) TCGA-BR-8680-01 8 70585235 70585235 C T SLCO5A1 Missense_Mutation p.E806K 0.34 deleterious_low_confidence(0.02) possibly_damaging(0.616) TCGA-BR-8680-01 8 71033568 71033568 T C NCOA2 Missense_Mutation p.D1451G 0.24 deleterious_low_confidence(0.02) possibly_damaging(0.701) TCGA-BR-8680-01 8 71068536 71068536 T G NCOA2 Missense_Mutation p.K688N 0.07 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 8 71075749 71075749 T G NCOA2 Missense_Mutation p.R261S 0.32 deleterious(0) probably_damaging(0.998) TCGA-BR-8680-01 8 71082507 71082507 T G NCOA2 Missense_Mutation p.K157N 0.16 deleterious(0) benign(0.099) TCGA-BR-8680-01 8 71126174 71126174 C A NCOA2 Nonsense_Mutation p.E75* 0.23 TCGA-BR-8680-01 8 71495976 71495976 G T TRAM1 Missense_Mutation p.L267I 0.37 deleterious(0.05) possibly_damaging(0.706) TCGA-BR-8680-01 8 71553193 71553193 G A LACTB2 Missense_Mutation p.R229C 0.40 deleterious(0.02) benign(0.368) TCGA-BR-8680-01 8 71593170 71593170 A C XKR9 5'UTR 0.58 TCGA-BR-8680-01 8 72246342 72246342 G T EYA1 Missense_Mutation p.F64L 0.35 tolerated(0.1) probably_damaging(0.99) TCGA-BR-8680-01 8 72756409 72756409 G A MSC Missense_Mutation p.S2F 0.39 deleterious(0) probably_damaging(0.997) TCGA-BR-8680-01 8 72973946 72973946 C A TRPA1 Missense_Mutation p.E286D 0.27 tolerated(0.14) benign(0.094) TCGA-BR-8680-01 8 72983961 72983961 C A TRPA1 Missense_Mutation p.D85Y 0.30 deleterious(0.03) possibly_damaging(0.646) TCGA-BR-8680-01 8 73850390 73850390 C T KCNB2 3'UTR 0.39 TCGA-BR-8680-01 8 74922307 74922307 G T LY96 Nonsense_Mutation p.E92* 0.31 TCGA-BR-8680-01 8 75233263 75233263 G T JPH1 Nonsense_Mutation p.S87* 0.27 TCGA-BR-8680-01 8 75737376 75737376 C A PI15 Intron 0.32 TCGA-BR-8680-01 8 77617005 77617005 C T ZFHX4 Missense_Mutation p.R228C 0.26 possibly_damaging(0.835) TCGA-BR-8680-01 8 77617895 77617895 C A ZFHX4 Silent p.S524S 0.30 TCGA-BR-8680-01 8 77617928 77617929 - A ZFHX4 Frame_Shift_Ins p.Q538Tfs*6 0.24 TCGA-BR-8680-01 8 77763421 77763421 C T ZFHX4 Missense_Mutation p.R1422W 0.32 possibly_damaging(0.835) TCGA-BR-8680-01 8 77766413 77766413 C A ZFHX4 Missense_Mutation p.S2419Y 0.33 benign(0.41) TCGA-BR-8680-01 8 7807605 7807605 G T ZNF705B Nonsense_Mutation p.E64* 0.11 TCGA-BR-8680-01 8 79629691 79629691 T C ZC2HC1A Missense_Mutation p.F314S 0.26 deleterious(0) possibly_damaging(0.789) TCGA-BR-8680-01 8 79645919 79645919 C T IL7 3'UTR 0.24 TCGA-BR-8680-01 8 80567157 80567157 C T STMN2 Nonsense_Mutation p.R114* 0.46 TCGA-BR-8680-01 8 81888912 81888912 G A PAG1 Missense_Mutation p.A389V 0.32 tolerated(0.05) probably_damaging(0.999) TCGA-BR-8680-01 8 8235348 8235348 C A SGK223 Nonsense_Mutation p.E191* 0.43 TCGA-BR-8680-01 8 82390939 82390939 A C FABP4 3'UTR 0.42 TCGA-BR-8680-01 8 82615252 82615252 G A ZFAND1 Silent p.A196A 0.27 TCGA-BR-8680-01 8 82752105 82752105 A C SNX16 Silent p.S39S 0.32 TCGA-BR-8680-01 8 86037034 86037034 C T LRRCC1 Missense_Mutation p.R378C 0.26 deleterious(0.02) possibly_damaging(0.856) TCGA-BR-8680-01 8 87393047 87393047 A C WWP1 Missense_Mutation p.K55Q 0.35 deleterious(0.04) probably_damaging(1) TCGA-BR-8680-01 8 87410844 87410844 G A WWP1 Silent p.E172E 0.29 TCGA-BR-8680-01 8 87424021 87424021 G A WWP1 Missense_Mutation p.A327T 0.25 tolerated(0.08) benign(0.006) TCGA-BR-8680-01 8 87541223 87541223 G T CPNE3 Missense_Mutation p.K61N 0.25 deleterious(0.02) possibly_damaging(0.9) TCGA-BR-8680-01 8 87641195 87641195 G A CNGB3 Nonsense_Mutation p.R478* 0.33 TCGA-BR-8680-01 8 87656903 87656903 A C CNGB3 Missense_Mutation p.F334L 0.24 deleterious(0) probably_damaging(0.998) TCGA-BR-8680-01 8 87679359 87679359 G A CNGB3 Nonsense_Mutation p.R216* 0.25 TCGA-BR-8680-01 8 88886206 88886206 C T DCAF4L2 5'UTR 0.36 TCGA-BR-8680-01 8 8998978 8998978 G A PPP1R3B Missense_Mutation p.R62W 0.49 deleterious(0) probably_damaging(0.957) TCGA-BR-8680-01 8 90937584 90937584 A G OSGIN2 Missense_Mutation p.T492A 0.36 tolerated(0.1) benign(0.001) TCGA-BR-8680-01 8 91072475 91072475 T C CALB1 Missense_Mutation p.I238V 0.37 tolerated(0.13) possibly_damaging(0.759) TCGA-BR-8680-01 8 94748656 94748656 G A RBM12B 5'UTR 0.33 TCGA-BR-8680-01 8 94807651 94807651 C T TMEM67 Silent p.F563F 0.34 TCGA-BR-8680-01 8 95500768 95500768 T G KIAA1429 3'UTR 0.31 TCGA-BR-8680-01 8 95523529 95523529 A G KIAA1429 Missense_Mutation p.S1092P 0.39 deleterious(0) probably_damaging(0.998) TCGA-BR-8680-01 8 9562212 9562212 C T TNKS Nonsense_Mutation p.R383* 0.34 TCGA-BR-8680-01 8 95800258 95800258 T G DPY19L4 Nonsense_Mutation p.L662* 0.28 TCGA-BR-8680-01 8 97172790 97172790 C T GDF6 Missense_Mutation p.R44Q 0.33 deleterious(0.02) benign(0.123) TCGA-BR-8680-01 8 97299345 97299345 C T PTDSS1 Nonsense_Mutation p.R138* 0.36 TCGA-BR-8680-01 8 97345750 97345750 C T PTDSS1 Missense_Mutation p.R460W 0.29 deleterious(0.04) possibly_damaging(0.549) TCGA-BR-8680-01 8 99139972 99139972 A C POP1 Missense_Mutation p.I98L 0.37 tolerated(0.42) benign(0.034) TCGA-BR-8680-01 8 99248398 99248398 C T NIPAL2 Missense_Mutation p.A141T 0.26 tolerated(0.2) benign(0.095) TCGA-BR-8680-01 9 100056271 100056271 C T CCDC180 5'UTR 0.36 TCGA-BR-8680-01 9 100069984 100069984 A G CCDC180 Intron 0.28 TCGA-BR-8680-01 9 100257990 100257990 G A TDRD7 Missense_Mutation p.R1041Q 0.27 deleterious(0) possibly_damaging(0.611) TCGA-BR-8680-01 9 100380144 100380144 T G TSTD2 Missense_Mutation p.E166D 0.36 tolerated(0.72) benign(0.003) TCGA-BR-8680-01 9 100449522 100449522 C T XPA Silent p.K137K 0.27 TCGA-BR-8680-01 9 100692644 100692644 C A HEMGN Nonsense_Mutation p.E345* 0.35 TCGA-BR-8680-01 9 100692828 100692828 T G HEMGN Missense_Mutation p.E283D 0.17 tolerated(0.11) probably_damaging(0.953) TCGA-BR-8680-01 9 100845151 100845151 A C NANS Missense_Mutation p.K298N 0.36 tolerated(0.34) benign(0.02) TCGA-BR-8680-01 9 101068400 101068400 T C GABBR2 Intron 0.45 TCGA-BR-8680-01 9 101304324 101304324 A C GABBR2 Missense_Mutation p.L154R 0.38 deleterious(0) probably_damaging(0.986) TCGA-BR-8680-01 9 101536249 101536249 C T ANKS6 Silent p.T577T 0.37 TCGA-BR-8680-01 9 101767207 101767207 G A COL15A1 Missense_Mutation p.A410T 0.38 tolerated_low_confidence(0.53) benign(0.003) TCGA-BR-8680-01 9 101801001 101801001 C T COL15A1 Silent p.L821L 0.26 TCGA-BR-8680-01 9 102988353 102988353 C T INVS Missense_Mutation p.R95C 0.39 deleterious(0) probably_damaging(0.993) TCGA-BR-8680-01 9 104152671 104152671 A C MRPL50 3'UTR 0.40 TCGA-BR-8680-01 9 104170264 104170264 G T ZNF189 Nonsense_Mutation p.E72* 0.36 TCGA-BR-8680-01 9 104183975 104183975 T C ALDOB 3'UTR 0.50 TCGA-BR-8680-01 9 104317003 104317003 G A RNF20 Missense_Mutation p.D683N 0.36 deleterious(0.04) possibly_damaging(0.573) TCGA-BR-8680-01 9 1053757 1053757 C T DMRT2 Silent p.F187F 0.33 TCGA-BR-8680-01 9 105767051 105767051 T A CYLC2 Silent p.S85S 0.48 TCGA-BR-8680-01 9 105767610 105767610 G T CYLC2 Nonsense_Mutation p.E233* 0.26 TCGA-BR-8680-01 9 107288807 107288807 C T OR13C4 Silent p.T228T 0.28 TCGA-BR-8680-01 9 107361671 107361671 A G OR13C5 Silent p.I8I 0.28 TCGA-BR-8680-01 9 107547710 107547710 T G ABCA1 Missense_Mutation p.E2204D 0.27 deleterious(0.03) benign(0.302) TCGA-BR-8680-01 9 107582240 107582240 C T ABCA1 Missense_Mutation p.S1024N 0.34 tolerated(0.27) benign(0.007) TCGA-BR-8680-01 9 108536166 108536166 G T TMEM38B Missense_Mutation p.Q227H 0.24 tolerated(0.74) benign(0.007) TCGA-BR-8680-01 9 109691051 109691051 G A ZNF462 Missense_Mutation p.E1620K 0.31 possibly_damaging(0.515) TCGA-BR-8680-01 9 111624759 111624759 G T ACTL7A Nonsense_Mutation p.E53* 0.34 TCGA-BR-8680-01 9 111689701 111689701 G T IKBKAP Silent p.I112I 0.37 TCGA-BR-8680-01 9 111761501 111761501 T G CTNNAL1 Missense_Mutation p.K59N 0.33 tolerated(0.19) probably_damaging(0.968) TCGA-BR-8680-01 9 111795637 111795637 C T TMEM245 Silent p.T848T 0.29 TCGA-BR-8680-01 9 112018421 112018421 G T EPB41L4B Missense_Mutation p.F308L 0.30 deleterious(0.01) probably_damaging(0.996) TCGA-BR-8680-01 9 113170530 113170530 G T SVEP1 Silent p.I2450I 0.18 TCGA-BR-8680-01 9 113198718 113198718 G T SVEP1 Missense_Mutation p.S1569Y 0.26 probably_damaging(0.996) TCGA-BR-8680-01 9 113208196 113208196 C T SVEP1 Missense_Mutation p.D1462N 0.39 benign(0.001) TCGA-BR-8680-01 9 113221386 113221386 A G SVEP1 Silent p.C1110C 0.30 TCGA-BR-8680-01 9 113238472 113238472 G T SVEP1 Intron 0.29 TCGA-BR-8680-01 9 113704061 113704061 C T LPAR1 Missense_Mutation p.E145K 0.36 deleterious(0) possibly_damaging(0.561) TCGA-BR-8680-01 9 113734453 113734453 T G LPAR1 5'UTR 0.34 TCGA-BR-8680-01 9 114304143 114304143 A G ZNF483 Missense_Mutation p.N310D 0.36 tolerated(0.15) benign(0.292) TCGA-BR-8680-01 9 114412194 114412194 G T DNAJC25 Missense_Mutation p.E317D 0.38 tolerated(0.35) benign(0.014) TCGA-BR-8680-01 9 114462248 114462248 C A C9orf84 Nonsense_Mutation p.E993* 0.34 TCGA-BR-8680-01 9 114521706 114521706 T G C9orf84 Intron 0.57 TCGA-BR-8680-01 9 114687128 114687128 C A UGCG Missense_Mutation p.L139I 0.33 deleterious(0.04) possibly_damaging(0.718) TCGA-BR-8680-01 9 114688676 114688676 C T UGCG Missense_Mutation p.T153M 0.29 deleterious(0) probably_damaging(0.973) TCGA-BR-8680-01 9 115421687 115421687 T C KIAA1958 Missense_Mutation p.S497P 0.35 deleterious(0) possibly_damaging(0.86) TCGA-BR-8680-01 9 115421766 115421766 C T KIAA1958 Missense_Mutation p.S523L 0.21 tolerated(0.05) benign(0.058) TCGA-BR-8680-01 9 115449805 115449805 G A INIP 3'UTR 0.35 TCGA-BR-8680-01 9 115759713 115759713 C T ZNF883 RNA 0.31 TCGA-BR-8680-01 9 115805311 115805311 A C ZFP37 Missense_Mutation p.I529M 0.43 tolerated(0.09) possibly_damaging(0.826) TCGA-BR-8680-01 9 115806243 115806243 T C ZFP37 Missense_Mutation p.T219A 0.05 tolerated(0.18) benign(0.009) TCGA-BR-8680-01 9 115946040 115946040 C T FKBP15 Missense_Mutation p.R601Q 0.30 tolerated(0.31) probably_damaging(0.998) TCGA-BR-8680-01 9 116041260 116041260 C T PRPF4 Nonsense_Mutation p.R82* 0.38 TCGA-BR-8680-01 9 116080896 116080896 G A WDR31 Nonsense_Mutation p.R268* 0.32 TCGA-BR-8680-01 9 116094237 116094237 G A WDR31 Silent p.V22V 0.30 TCGA-BR-8680-01 9 116269874 116269874 G A RGS3 Missense_Mutation p.D465N 0.38 deleterious(0.02) probably_damaging(0.964) TCGA-BR-8680-01 9 116303692 116303692 G A RGS3 Intron 0.33 TCGA-BR-8680-01 9 116812263 116812263 C T ZNF618 Missense_Mutation p.S801L 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8680-01 9 116930507 116930507 C T COL27A1 Silent p.V224V 0.35 TCGA-BR-8680-01 9 117092235 117092235 A C ORM2 Missense_Mutation p.E17D 0.25 tolerated(1) benign(0.004) TCGA-BR-8680-01 9 117266526 117266526 C T DFNB31 Missense_Mutation p.D186N 0.30 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 9 117666356 117666356 T C TNFSF8 Missense_Mutation p.Y187C 0.34 deleterious(0) probably_damaging(0.997) TCGA-BR-8680-01 9 117825464 117825464 C A TNC Missense_Mutation p.E1255D 0.30 tolerated(0.27) benign(0.05) TCGA-BR-8680-01 9 117840406 117840406 G A TNC Silent p.I830I 0.36 TCGA-BR-8680-01 9 118974146 118974146 G T PAPPA Missense_Mutation p.G618V 0.32 tolerated(0.55) probably_damaging(0.988) TCGA-BR-8680-01 9 118997781 118997781 C T PAPPA Missense_Mutation p.A866V 0.47 deleterious(0) possibly_damaging(0.483) TCGA-BR-8680-01 9 118997789 118997789 T C PAPPA Silent p.L869L 0.44 TCGA-BR-8680-01 9 119188144 119188144 A G ASTN2 Missense_Mutation p.S1285P 0.30 tolerated_low_confidence(0.25) unknown(0) TCGA-BR-8680-01 9 119625945 119625945 G A ASTN2 Missense_Mutation p.R602C 0.31 deleterious(0) unknown(0) TCGA-BR-8680-01 9 123215733 123215733 C T CDK5RAP2 Splice_Site p.X931_splice 0.36 TCGA-BR-8680-01 9 123725007 123725007 G T C5 Silent p.L1482L 0.28 TCGA-BR-8680-01 9 123742403 123742403 G A C5 Missense_Mutation p.R1206C 0.25 tolerated(0.12) benign(0.004) TCGA-BR-8680-01 9 123782251 123782251 T C C5 Intron 0.41 TCGA-BR-8680-01 9 123912533 123912533 G T CNTRL Missense_Mutation p.M1245I 0.33 benign(0.001) TCGA-BR-8680-01 9 123927254 123927254 G T CNTRL Missense_Mutation p.M1819I 0.36 benign(0.002) TCGA-BR-8680-01 9 123928390 123928390 C T CNTRL Nonsense_Mutation p.R1863* 0.38 TCGA-BR-8680-01 9 124914534 124914534 C T NDUFA8 Missense_Mutation p.D69N 0.32 tolerated(0.49) benign(0.002) TCGA-BR-8680-01 9 124936902 124936902 C T MORN5 Silent p.N145N 0.33 TCGA-BR-8680-01 9 124976602 124976602 G A LHX6 Missense_Mutation p.A248V 0.25 deleterious(0) possibly_damaging(0.801) TCGA-BR-8680-01 9 125009820 125009820 G A RBM18 Nonsense_Mutation p.R102* 0.24 TCGA-BR-8680-01 9 125273593 125273593 G A OR1J2 Silent p.A171A 0.35 TCGA-BR-8680-01 9 125288673 125288673 C A OR1N1 Missense_Mutation p.K300N 0.32 tolerated(0.21) benign(0.001) TCGA-BR-8680-01 9 125437916 125437916 A G OR1L3 Missense_Mutation p.T170A 0.33 tolerated(1) benign(0.001) TCGA-BR-8680-01 9 125486541 125486541 G T OR1L4 Missense_Mutation p.K91N 0.09 deleterious(0.02) benign(0.012) TCGA-BR-8680-01 9 125562444 125562444 T G OR1K1 Missense_Mutation p.L15V 0.31 deleterious(0) probably_damaging(0.987) TCGA-BR-8680-01 9 125616211 125616211 G A RC3H2 Intron 0.34 TCGA-BR-8680-01 9 125674239 125674239 T C ZBTB6 Missense_Mutation p.Y38C 0.34 tolerated(0.13) benign(0.067) TCGA-BR-8680-01 9 125682174 125682174 T G ZBTB26 Missense_Mutation p.N14H 0.32 tolerated(0.09) possibly_damaging(0.862) TCGA-BR-8680-01 9 125758389 125758389 C A RABGAP1 Silent p.I331I 0.28 TCGA-BR-8680-01 9 125861055 125861055 C A RABGAP1 Missense_Mutation p.S932Y 0.35 deleterious(0.01) probably_damaging(0.986) TCGA-BR-8680-01 9 125935984 125935984 A G STRBP Missense_Mutation p.V121A 0.36 deleterious(0) probably_damaging(0.913) TCGA-BR-8680-01 9 126777465 126777465 C T LHX2 Missense_Mutation p.R130C 0.28 deleterious(0) probably_damaging(0.963) TCGA-BR-8680-01 9 127289152 127289152 G A NR6A1 Silent p.I369I 0.40 TCGA-BR-8680-01 9 127684102 127684102 G A GOLGA1 Missense_Mutation p.R211C 0.34 tolerated(0.07) benign(0.008) TCGA-BR-8680-01 9 128086089 128086089 G A GAPVD1 Missense_Mutation p.R582H 0.40 tolerated(0.77) probably_damaging(0.998) TCGA-BR-8680-01 9 12821683 12821683 A G LURAP1L Missense_Mutation p.D204G 0.34 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 9 129641682 129641682 T C ZBTB34 5'UTR 0.42 TCGA-BR-8680-01 9 129870556 129870556 G A ANGPTL2 Missense_Mutation p.A152V 0.34 tolerated(0.08) possibly_damaging(0.717) TCGA-BR-8680-01 9 129974967 129974967 C T RALGPS1 Missense_Mutation p.A472V 0.35 deleterious(0.04) possibly_damaging(0.559) TCGA-BR-8680-01 9 130374622 130374622 C T STXBP1 5'UTR 0.44 TCGA-BR-8680-01 9 130536742 130536742 G A SH2D3C Silent p.F14F 0.41 TCGA-BR-8680-01 9 130569902 130569902 G A FPGS Missense_Mutation p.D227N 0.38 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 9 130860921 130860921 C T SLC25A25 Intron 0.30 TCGA-BR-8680-01 9 131107806 131107806 C A SLC27A4 Silent p.V178V 0.25 TCGA-BR-8680-01 9 131151722 131151722 T G URM1 Missense_Mutation p.L124R 0.44 deleterious_low_confidence(0.02) probably_damaging(0.955) TCGA-BR-8680-01 9 131503881 131503881 T G ZER1 Missense_Mutation p.E557A 0.34 deleterious(0) probably_damaging(0.997) TCGA-BR-8680-01 9 131565546 131565546 G T TBC1D13 Missense_Mutation p.K187N 0.21 tolerated(0.07) benign(0.21) TCGA-BR-8680-01 9 13168391 13168391 T G MPDZ Missense_Mutation p.R1076S 0.27 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 9 131703788 131703788 G A PHYHD1 Missense_Mutation p.R249H 0.38 tolerated_low_confidence(0.55) possibly_damaging(0.715) TCGA-BR-8680-01 9 131708138 131708138 G A DOLK Missense_Mutation p.A482V 0.37 tolerated(0.07) probably_damaging(0.981) TCGA-BR-8680-01 9 131708450 131708450 T C DOLK Missense_Mutation p.Y378C 0.34 deleterious(0.01) probably_damaging(0.927) TCGA-BR-8680-01 9 131730975 131730975 A G NUP188 Missense_Mutation p.D259G 0.37 deleterious(0.02) benign(0.287) TCGA-BR-8680-01 9 131747191 131747191 G A NUP188 Missense_Mutation p.M658I 0.45 tolerated(0.06) possibly_damaging(0.843) TCGA-BR-8680-01 9 131761490 131761490 G A NUP188 Silent p.T1185T 0.21 TCGA-BR-8680-01 9 132584974 132584974 G A TOR1A Silent p.F110F 0.39 TCGA-BR-8680-01 9 132618599 132618599 C T USP20 Missense_Mutation p.S32L 0.30 deleterious(0.03) possibly_damaging(0.613) TCGA-BR-8680-01 9 132658222 132658222 C T FNBP1 Missense_Mutation p.E581K 0.28 deleterious(0) probably_damaging(0.98) TCGA-BR-8680-01 9 132665242 132665242 T C FNBP1 Missense_Mutation p.N445S 0.50 tolerated(0.18) probably_damaging(0.999) TCGA-BR-8680-01 9 132866788 132866788 C T GPR107 Silent p.V407V 0.23 TCGA-BR-8680-01 9 133738166 133738166 A G ABL1 Missense_Mutation p.E208G 0.28 deleterious(0.02) probably_damaging(0.997) TCGA-BR-8680-01 9 133920995 133920995 C T LAMC3 Silent p.C489C 0.29 TCGA-BR-8680-01 9 134067535 134067535 T G NUP214 Intron 0.44 TCGA-BR-8680-01 9 134401365 134401365 C T UCK1 Splice_Site p.X207_splice 0.35 TCGA-BR-8680-01 9 134497187 134497187 T G RAPGEF1 Missense_Mutation p.Q635P 0.50 deleterious(0.01) probably_damaging(0.996) TCGA-BR-8680-01 9 135073374 135073374 A G NTNG2 Missense_Mutation p.N79D 0.21 tolerated(0.69) benign(0.002) TCGA-BR-8680-01 9 135150684 135150684 C T SETX Silent p.T2353T 0.31 TCGA-BR-8680-01 9 135204697 135204697 T G SETX Missense_Mutation p.E763A 0.38 deleterious_low_confidence(0.01) benign(0.118) TCGA-BR-8680-01 9 135221766 135221766 T C SETX Silent p.V90V 0.38 TCGA-BR-8680-01 9 135251430 135251430 C T TTF1 Missense_Mutation p.D864N 0.26 deleterious(0) probably_damaging(0.992) TCGA-BR-8680-01 9 135470130 135470130 C A DDX31 3'UTR 0.40 TCGA-BR-8680-01 9 136330477 136330477 G A CACFD1 Silent p.A76A 0.33 TCGA-BR-8680-01 9 136412278 136412278 G T ADAMTSL2 Missense_Mutation p.E294D 0.30 deleterious(0.04) possibly_damaging(0.9) TCGA-BR-8680-01 9 136508639 136508639 C T DBH Silent p.C283C 0.27 TCGA-BR-8680-01 9 136509381 136509381 T C DBH Silent p.G321G 0.13 TCGA-BR-8680-01 9 136522377 136522377 G A DBH Intron 0.31 TCGA-BR-8680-01 9 136913345 136913345 C T BRD3 Missense_Mutation p.D316N 0.50 tolerated(1) probably_damaging(0.981) TCGA-BR-8680-01 9 137630640 137630640 G A COL5A1 Missense_Mutation p.D494N 0.10 probably_damaging(0.998) TCGA-BR-8680-01 9 138380043 138380043 G T PPP1R26 3'UTR 0.31 TCGA-BR-8680-01 9 138706958 138706958 C A CAMSAP1 Missense_Mutation p.K1497N 0.31 deleterious(0) probably_damaging(0.997) TCGA-BR-8680-01 9 139298607 139298607 G A SDCCAG3 Missense_Mutation p.R370W 0.29 deleterious(0) probably_damaging(0.984) TCGA-BR-8680-01 9 139371654 139371654 C A SEC16A Missense_Mutation p.M138I 0.38 tolerated(0.63) benign(0.013) TCGA-BR-8680-01 9 139391777 139391777 C T NOTCH1 Silent p.P2138P 0.27 TCGA-BR-8680-01 9 139617800 139617800 C T FAM69B Silent p.Y290Y 0.34 TCGA-BR-8680-01 9 139637344 139637344 C T LCN10 Silent p.G4G 0.37 TCGA-BR-8680-01 9 139658209 139658209 G A LCN15 Missense_Mutation p.A88V 0.37 tolerated(0.28) possibly_damaging(0.533) TCGA-BR-8680-01 9 140108241 140108241 C T NDOR1 Silent p.F107F 0.33 TCGA-BR-8680-01 9 140140191 140140191 G A FAM166A Silent p.S57S 0.38 TCGA-BR-8680-01 9 140646849 140646849 G A EHMT1 Missense_Mutation p.E413K 0.31 deleterious(0.01) probably_damaging(0.994) TCGA-BR-8680-01 9 140671280 140671280 G A EHMT1 Missense_Mutation p.D668N 0.38 deleterious(0.04) benign(0.072) TCGA-BR-8680-01 9 140777318 140777318 C T CACNA1B Silent p.F171F 0.17 TCGA-BR-8680-01 9 140954118 140954118 G A CACNA1B Missense_Mutation p.D1533N 0.23 deleterious(0.02) probably_damaging(0.986) TCGA-BR-8680-01 9 140972701 140972701 C T CACNA1B Silent p.C1695C 0.25 TCGA-BR-8680-01 9 141016245 141016245 G A CACNA1B Missense_Mutation p.A2272T 0.39 tolerated(0.68) benign(0.002) TCGA-BR-8680-01 9 14619044 14619044 G A ZDHHC21 Missense_Mutation p.R240C 0.38 deleterious(0.04) possibly_damaging(0.828) TCGA-BR-8680-01 9 14737488 14737488 T G FREM1 Missense_Mutation p.K2149T 0.50 deleterious(0.01) possibly_damaging(0.677) TCGA-BR-8680-01 9 14748531 14748531 A G FREM1 Silent p.G1888G 0.23 TCGA-BR-8680-01 9 14851533 14851533 C T FREM1 Missense_Mutation p.A301T 0.28 deleterious(0.02) benign(0.072) TCGA-BR-8680-01 9 15192692 15192692 C A TTC39B Nonsense_Mutation p.E276* 0.35 TCGA-BR-8680-01 9 15571628 15571628 G T CCDC171 Missense_Mutation p.K16N 0.30 deleterious_low_confidence(0.02) possibly_damaging(0.818) TCGA-BR-8680-01 9 15678796 15678796 G T CCDC171 Nonsense_Mutation p.E373* 0.38 TCGA-BR-8680-01 9 15678883 15678883 G A CCDC171 Missense_Mutation p.E402K 0.33 deleterious(0.05) probably_damaging(0.999) TCGA-BR-8680-01 9 15874610 15874610 G T CCDC171 Missense_Mutation p.E1183D 0.35 tolerated(0.16) probably_damaging(0.998) TCGA-BR-8680-01 9 17462966 17462966 T G CNTLN Missense_Mutation p.F1120C 0.35 tolerated(0.18) benign(0.004) TCGA-BR-8680-01 9 17786463 17786463 C T SH3GL2 Missense_Mutation p.A91V 0.43 deleterious(0) benign(0.04) TCGA-BR-8680-01 9 18680579 18680579 G A ADAMTSL1 Intron 0.26 TCGA-BR-8680-01 9 18928034 18928034 T G FAM154A 3'UTR 0.31 TCGA-BR-8680-01 9 19058433 19058433 C T HAUS6 Missense_Mutation p.E778K 0.40 deleterious(0) probably_damaging(0.997) TCGA-BR-8680-01 9 19116286 19116286 C T PLIN2 Missense_Mutation p.S425N 0.32 tolerated_low_confidence(0.12) benign(0.002) TCGA-BR-8680-01 9 19331982 19331982 A C DENND4C Missense_Mutation p.K754Q 0.27 deleterious(0) possibly_damaging(0.783) TCGA-BR-8680-01 9 19371815 19371815 A T DENND4C Missense_Mutation p.I1864F 0.36 deleterious(0) probably_damaging(0.984) TCGA-BR-8680-01 9 20720434 20720434 G A FOCAD Missense_Mutation p.R63Q 0.29 tolerated(0.06) benign(0.293) TCGA-BR-8680-01 9 20758164 20758164 A C FOCAD Silent p.T156T 0.42 TCGA-BR-8680-01 9 20770060 20770060 G A FOCAD Silent p.A243A 0.40 TCGA-BR-8680-01 9 20907233 20907233 A C FOCAD Missense_Mutation p.I904L 0.05 tolerated(0.12) benign(0.005) TCGA-BR-8680-01 9 21206631 21206631 C A IFNA10 Nonsense_Mutation p.E156* 0.33 TCGA-BR-8680-01 9 21217072 21217072 G T IFNA16 Missense_Mutation p.S78Y 0.33 deleterious(0.05) benign(0.086) TCGA-BR-8680-01 9 21333694 21333694 G A KLHL9 Missense_Mutation p.R389C 0.34 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 9 21334480 21334480 C T KLHL9 Missense_Mutation p.E127K 0.29 tolerated(0.28) possibly_damaging(0.696) TCGA-BR-8680-01 9 21334921 21334921 T G KLHL9 5'UTR 0.26 TCGA-BR-8680-01 9 21367840 21367840 C A IFNA13 Missense_Mutation p.R57I 0.21 deleterious(0.02) probably_damaging(0.996) TCGA-BR-8680-01 9 21385197 21385197 C A IFNA2 Missense_Mutation p.M44I 0.26 deleterious(0.03) possibly_damaging(0.737) TCGA-BR-8680-01 9 21409167 21409167 A C IFNA8 5'UTR 0.27 TCGA-BR-8680-01 9 21441102 21441102 C A IFNA1 3'UTR 0.34 TCGA-BR-8680-01 9 214896 214896 T G C9orf66 Missense_Mutation p.E167D 0.29 tolerated_low_confidence(0.22) benign(0.388) TCGA-BR-8680-01 9 2161877 2161877 C T SMARCA2 Silent p.I1391I 0.36 TCGA-BR-8680-01 9 27048155 27048155 C T IFT74 Missense_Mutation p.R406C 0.34 deleterious(0.01) benign(0.001) TCGA-BR-8680-01 9 27202837 27202837 A C TEK Missense_Mutation p.E643D 0.33 tolerated(0.17) benign(0.013) TCGA-BR-8680-01 9 27949023 27949023 G T LINGO2 Nonsense_Mutation p.C549* 0.25 TCGA-BR-8680-01 9 27949138 27949138 G A LINGO2 Missense_Mutation p.A511V 0.31 tolerated(0.28) benign(0.062) TCGA-BR-8680-01 9 32630386 32630386 T C TAF1L Missense_Mutation p.K1731R 0.35 tolerated_low_confidence(0.46) benign(0.068) TCGA-BR-8680-01 9 32630947 32630947 G T TAF1L Missense_Mutation p.S1544Y 0.28 deleterious(0) probably_damaging(0.996) TCGA-BR-8680-01 9 32632206 32632206 C A TAF1L Missense_Mutation p.E1124D 0.25 deleterious(0) possibly_damaging(0.615) TCGA-BR-8680-01 9 32633110 32633110 C T TAF1L Missense_Mutation p.R823Q 0.39 deleterious(0) benign(0.386) TCGA-BR-8680-01 9 33472254 33472254 G A NOL6 Missense_Mutation p.R71C 0.40 deleterious(0) possibly_damaging(0.453) TCGA-BR-8680-01 9 336642 336642 C T DOCK8 Missense_Mutation p.A449V 0.39 tolerated(0.49) benign(0.017) TCGA-BR-8680-01 9 336644 336644 C A DOCK8 Missense_Mutation p.L450I 0.39 tolerated(0.4) benign(0.007) TCGA-BR-8680-01 9 33676442 33676442 G T PTENP1 RNA 0.26 TCGA-BR-8680-01 9 33953403 33953403 T G UBAP2 Missense_Mutation p.E312D 0.41 tolerated(0.42) probably_damaging(0.997) TCGA-BR-8680-01 9 34107458 34107458 C T DCAF12 Missense_Mutation p.E147K 0.30 deleterious(0.01) possibly_damaging(0.693) TCGA-BR-8680-01 9 34339065 34339065 A C NUDT2 Missense_Mutation p.I10L 0.30 tolerated(0.08) possibly_damaging(0.456) TCGA-BR-8680-01 9 34662389 34662389 G A CCL27 Missense_Mutation p.A32V 0.38 deleterious(0) benign(0.192) TCGA-BR-8680-01 9 34689961 34689961 C T CCL19 Missense_Mutation p.R81H 0.29 deleterious(0.05) benign(0.212) TCGA-BR-8680-01 9 35044662 35044662 A G C9orf131 Missense_Mutation p.N679S 0.32 tolerated(0.07) possibly_damaging(0.84) TCGA-BR-8680-01 9 35094318 35094318 C A PIGO Missense_Mutation p.D184Y 0.29 deleterious(0.01) possibly_damaging(0.718) TCGA-BR-8680-01 9 35095206 35095206 C T PIGO Silent p.R119R 0.34 TCGA-BR-8680-01 9 35108146 35108146 C T FAM214B Silent p.A42A 0.21 TCGA-BR-8680-01 9 35449974 35449974 C A ATP8B5P RNA 0.22 TCGA-BR-8680-01 9 35754167 35754167 T G MSMP 5'UTR 0.29 TCGA-BR-8680-01 9 35808275 35808275 G A SPAG8 Silent p.C467C 0.29 TCGA-BR-8680-01 9 36665442 36665442 A C MELK Missense_Mutation p.E424D 0.08 tolerated(0.1) probably_damaging(0.936) TCGA-BR-8680-01 9 37356833 37356833 A G ZCCHC7 Silent p.V400V 0.30 TCGA-BR-8680-01 9 37440877 37440877 T C ZBTB5 Missense_Mutation p.T558A 0.32 tolerated(0.56) benign(0) TCGA-BR-8680-01 9 37442225 37442225 C A ZBTB5 Missense_Mutation p.L108F 0.40 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 9 37501836 37501836 G T POLR1E Missense_Mutation p.E365D 0.33 deleterious(0.04) benign(0.106) TCGA-BR-8680-01 9 37592334 37592334 G T TOMM5 Missense_Mutation p.H66N 0.20 tolerated_low_confidence(0.11) benign(0.007) TCGA-BR-8680-01 9 37740573 37740573 T G FRMPD1 Missense_Mutation p.F683C 0.23 tolerated(0.21) benign(0.003) TCGA-BR-8680-01 9 37744622 37744622 G A FRMPD1 Missense_Mutation p.D865N 0.36 tolerated(0.29) benign(0.002) TCGA-BR-8680-01 9 37769953 37769953 G A TRMT10B Missense_Mutation p.E197K 0.36 tolerated(0.13) benign(0.078) TCGA-BR-8680-01 9 37861675 37861675 A G DCAF10 3'UTR 0.38 TCGA-BR-8680-01 9 39085964 39085964 A C CNTNAP3 Intron 0.45 TCGA-BR-8680-01 9 39117995 39117995 T C CNTNAP3 Intron 0.31 TCGA-BR-8680-01 9 39171561 39171561 A C CNTNAP3 Missense_Mutation p.Y380D 0.20 deleterious(0) possibly_damaging(0.786) TCGA-BR-8680-01 9 40702862 40702862 A G SPATA31A3 Silent p.P173P 0.20 TCGA-BR-8680-01 9 43627815 43627815 C A SPATA31A6 Missense_Mutation p.C291F 0.32 deleterious(0.01) possibly_damaging(0.509) TCGA-BR-8680-01 9 4793106 4793106 G A RCL1 Silent p.A5A 0.46 TCGA-BR-8680-01 9 5022092 5022092 A T JAK2 Silent p.I35I 0.43 TCGA-BR-8680-01 9 5054708 5054708 T C JAK2 Missense_Mutation p.Y254H 0.32 deleterious(0) probably_damaging(0.968) TCGA-BR-8680-01 9 5534983 5534983 A G PDCD1LG2 Silent p.G98G 0.32 TCGA-BR-8680-01 9 5689981 5689981 T G KIAA1432 Missense_Mutation p.F92C 0.28 deleterious(0.02) possibly_damaging(0.479) TCGA-BR-8680-01 9 5763584 5763584 A G KIAA1432 Missense_Mutation p.T853A 0.34 tolerated(0.58) benign(0.001) TCGA-BR-8680-01 9 5772625 5772625 C T KIAA1432 Silent p.G1226G 0.45 TCGA-BR-8680-01 9 5920617 5920617 A C KIAA2026 Missense_Mutation p.I1793M 0.35 deleterious(0.04) benign(0.371) TCGA-BR-8680-01 9 6015379 6015379 G A RANBP6 Missense_Mutation p.L77F 0.30 deleterious(0.01) probably_damaging(0.98) TCGA-BR-8680-01 9 6252976 6252976 A C IL33 Missense_Mutation p.K152Q 0.28 deleterious(0.02) benign(0.243) TCGA-BR-8680-01 9 6553497 6553497 G A GLDC Silent p.L776L 0.29 TCGA-BR-8680-01 9 6595109 6595109 G A GLDC Missense_Mutation p.A389V 0.41 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 9 69205480 69205480 C A CBWD6 Missense_Mutation p.R353I 0.27 deleterious(0.04) possibly_damaging(0.703) TCGA-BR-8680-01 9 69423516 69423516 T G ANKRD20A4 Silent p.A604A 0.40 TCGA-BR-8680-01 9 71114209 71114209 C T PGM5 Missense_Mutation p.R516W 0.40 deleterious(0) possibly_damaging(0.586) TCGA-BR-8680-01 9 712098 712098 G T KANK1 Missense_Mutation p.M444I 0.28 deleterious(0.03) possibly_damaging(0.644) TCGA-BR-8680-01 9 71395903 71395903 G A FAM122A Missense_Mutation p.A275T 0.34 tolerated(0.41) benign(0.185) TCGA-BR-8680-01 9 72131279 72131279 G A APBA1 Missense_Mutation p.S283L 0.31 deleterious_low_confidence(0.04) benign(0.184) TCGA-BR-8680-01 9 72521090 72521090 A C C9orf135 3'UTR 0.31 TCGA-BR-8680-01 9 72893538 72893538 C T SMC5 Silent p.L225L 0.21 TCGA-BR-8680-01 9 72962937 72962937 C T SMC5 Missense_Mutation p.L958F 0.31 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 9 72965072 72965072 C T SMC5 Nonsense_Mutation p.R978* 0.42 TCGA-BR-8680-01 9 73442905 73442905 A C TRPM3 Missense_Mutation p.N277K 0.27 deleterious(0) possibly_damaging(0.817) TCGA-BR-8680-01 9 74349809 74349809 C T TMEM2 Missense_Mutation p.A436T 0.35 deleterious(0) benign(0.324) TCGA-BR-8680-01 9 74865555 74865555 T G GDA Intron 0.39 TCGA-BR-8680-01 9 75420302 75420302 T G TMC1 Missense_Mutation p.F524C 0.28 deleterious(0) probably_damaging(0.992) TCGA-BR-8680-01 9 77362808 77362808 C A TRPM6 Missense_Mutation p.D1694Y 0.23 deleterious(0) benign(0.128) TCGA-BR-8680-01 9 77377203 77377203 C A TRPM6 Nonsense_Mutation p.E1462* 0.32 TCGA-BR-8680-01 9 79875040 79875040 G A VPS13A Missense_Mutation p.R776Q 0.28 tolerated(0.45) benign(0.009) TCGA-BR-8680-01 9 79908403 79908403 G A VPS13A Silent p.T1162T 0.27 TCGA-BR-8680-01 9 79952328 79952328 A C VPS13A Missense_Mutation p.K2085Q 0.40 tolerated(0.25) benign(0.081) TCGA-BR-8680-01 9 80043929 80043929 C T GNA14 Missense_Mutation p.R206Q 0.34 deleterious(0) probably_damaging(0.924) TCGA-BR-8680-01 9 80863264 80863264 A C CEP78 Missense_Mutation p.K317T 0.34 tolerated(0.11) benign(0.004) TCGA-BR-8680-01 9 8317890 8317890 T C PTPRD Missense_Mutation p.D1908G 0.27 deleterious(0) probably_damaging(0.993) TCGA-BR-8680-01 9 84532096 84532096 G A SPATA31D5P RNA 0.39 TCGA-BR-8680-01 9 84534584 84534584 G T SPATA31D5P RNA 0.33 TCGA-BR-8680-01 9 84607583 84607583 A C SPATA31D1 Missense_Mutation p.N733T 0.40 tolerated(0.41) benign(0.014) TCGA-BR-8680-01 9 84608292 84608292 T C SPATA31D1 Silent p.F969F 0.32 TCGA-BR-8680-01 9 85630729 85630729 C A RASEF Missense_Mutation p.K252N 0.34 deleterious(0.02) benign(0.055) TCGA-BR-8680-01 9 85964665 85964665 T C FRMD3 Silent p.P101P 0.26 TCGA-BR-8680-01 9 86554390 86554390 G A C9orf64 3'UTR 0.43 TCGA-BR-8680-01 9 86571085 86571085 C T C9orf64 Missense_Mutation p.D111N 0.33 tolerated(0.05) possibly_damaging(0.69) TCGA-BR-8680-01 9 86617293 86617293 T G RMI1 Missense_Mutation p.C464W 0.30 tolerated(0.18) benign(0.047) TCGA-BR-8680-01 9 86928299 86928299 C T SLC28A3 Missense_Mutation p.S44N 0.34 tolerated(1) benign(0) TCGA-BR-8680-01 9 87339221 87339221 C T NTRK2 Missense_Mutation p.A268V 0.31 tolerated(0.06) probably_damaging(0.999) TCGA-BR-8680-01 9 88650485 88650485 C T GOLM1 Silent p.P271P 0.26 TCGA-BR-8680-01 9 88924147 88924147 A C ZCCHC6 Missense_Mutation p.F1214V 0.33 deleterious(0) possibly_damaging(0.815) TCGA-BR-8680-01 9 90264928 90264928 G T DAPK1 Missense_Mutation p.K507N 0.47 deleterious(0.03) possibly_damaging(0.609) TCGA-BR-8680-01 9 90500035 90500035 G A SPATA31E1 Silent p.E211E 0.27 TCGA-BR-8680-01 9 90501322 90501322 C A SPATA31E1 Silent p.S640S 0.28 TCGA-BR-8680-01 9 91041483 91041483 G A SPIN1 Missense_Mutation p.G10D 0.41 tolerated(0.1) benign(0.004) TCGA-BR-8680-01 9 91930195 91930195 A G CKS2 Missense_Mutation p.Y57C 0.37 deleterious(0) possibly_damaging(0.831) TCGA-BR-8680-01 9 91994492 91994492 C T SEMA4D Silent p.A572A 0.35 TCGA-BR-8680-01 9 94171887 94171887 G A NFIL3 Missense_Mutation p.S377F 0.31 deleterious(0) possibly_damaging(0.589) TCGA-BR-8680-01 9 94486891 94486891 C T ROR2 Missense_Mutation p.V629M 0.35 tolerated(0.05) possibly_damaging(0.789) TCGA-BR-8680-01 9 95025292 95025292 C T IARS Silent p.P582P 0.22 TCGA-BR-8680-01 9 95177490 95177490 C A OMD Nonsense_Mutation p.E404* 0.33 TCGA-BR-8680-01 9 95222031 95222031 T G ASPN Missense_Mutation p.K276N 0.32 tolerated(0.35) benign(0.375) TCGA-BR-8680-01 9 95263202 95263202 C T ECM2 Missense_Mutation p.E580K 0.31 tolerated(1) benign(0.005) TCGA-BR-8680-01 9 95738699 95738699 A G FGD3 Missense_Mutation p.D54G 0.30 deleterious_low_confidence(0.01) benign(0.211) TCGA-BR-8680-01 9 96326890 96326890 G T FAM120A 3'UTR 0.32 TCGA-BR-8680-01 9 97062108 97062108 G T ZNF169 Nonsense_Mutation p.E90* 0.25 TCGA-BR-8680-01 9 97209126 97209126 G T HIATL1 Missense_Mutation p.D251Y 0.29 deleterious(0) probably_damaging(0.916) TCGA-BR-8680-01 9 98011636 98011636 T G FANCC 5'UTR 0.46 TCGA-BR-8680-01 9 98685559 98685559 G A ERCC6L2 Silent p.R488R 0.31 TCGA-BR-8680-01 9 991147 991147 A C DMRT3 3'UTR 0.33 TCGA-BR-8680-01 9 99271994 99271994 C A CDC14B Missense_Mutation p.R474I 0.34 tolerated(0.22) probably_damaging(0.991) TCGA-BR-8680-01 9 99285665 99285665 G A CDC14B Missense_Mutation p.R375C 0.33 deleterious(0) possibly_damaging(0.647) TCGA-BR-8680-01 9 99521253 99521253 C A ZNF510 Missense_Mutation p.R620I 0.32 deleterious(0) probably_damaging(0.991) TCGA-BR-8680-01 9 99580766 99580766 T G ZNF782 Missense_Mutation p.K513N 0.41 deleterious(0) probably_damaging(0.998) TCGA-BR-8680-01 9 99581316 99581316 C A ZNF782 Missense_Mutation p.R330I 0.27 deleterious(0.01) benign(0) TCGA-BR-8680-01 X 100494085 100494085 G A DRP2 Missense_Mutation p.S185N 0.80 tolerated(0.11) benign(0.001) TCGA-BR-8680-01 X 100604713 100604713 G A BTK 3'UTR 0.71 TCGA-BR-8680-01 X 100650757 100650757 G T RPL36A 3'UTR 0.78 TCGA-BR-8680-01 X 100807871 100807871 G A ARMCX1 5'UTR 0.34 TCGA-BR-8680-01 X 101096040 101096040 C T NXF5 Missense_Mutation p.R143Q 0.68 tolerated(0.1) benign(0.017) TCGA-BR-8680-01 X 101098222 101098222 G A NXF5 5'UTR 0.84 TCGA-BR-8680-01 X 101381919 101381919 G T TCEAL2 Missense_Mutation p.K39N 0.67 deleterious(0.01) possibly_damaging(0.728) TCGA-BR-8680-01 X 101396254 101396254 T G TCEAL6 Missense_Mutation p.K17T 0.80 deleterious(0.02) possibly_damaging(0.466) TCGA-BR-8680-01 X 101624960 101624960 G A NXF2B Missense_Mutation p.R53C 0.45 tolerated(0.18) possibly_damaging(0.54) TCGA-BR-8680-01 X 101911263 101911263 G T GPRASP1 Nonsense_Mutation p.E808* 0.76 TCGA-BR-8680-01 X 102005180 102005180 A G BHLHB9 Silent p.S419S 0.83 TCGA-BR-8680-01 X 102864719 102864719 C T TCEAL3 3'UTR 0.60 TCGA-BR-8680-01 X 102885266 102885266 G T TCEAL1 Missense_Mutation p.R141I 0.75 deleterious(0) probably_damaging(0.955) TCGA-BR-8680-01 X 102962423 102962423 T C GLRA4 Missense_Mutation p.E368G 0.35 deleterious(0.03) possibly_damaging(0.689) TCGA-BR-8680-01 X 103359829 103359829 C T ZCCHC18 Nonsense_Mutation p.R343* 0.80 TCGA-BR-8680-01 X 105011054 105011054 C T IL1RAPL2 Silent p.F487F 0.79 TCGA-BR-8680-01 X 105449594 105449594 A G MUM1L1 Missense_Mutation p.I57V 1.00 tolerated(0.92) benign(0.002) TCGA-BR-8680-01 X 106803505 106803505 C T FRMPD3 Nonsense_Mutation p.R294* 0.36 TCGA-BR-8680-01 X 107328043 107328043 G A PSMD10 3'UTR 0.75 TCGA-BR-8680-01 X 107976445 107976445 G A IRS4 Nonsense_Mutation p.R1044* 0.84 TCGA-BR-8680-01 X 107978696 107978696 G T IRS4 Missense_Mutation p.F293L 0.75 deleterious(0.01) probably_damaging(0.994) TCGA-BR-8680-01 X 108638569 108638569 C T GUCY2F Splice_Site p.X808_splice 0.61 TCGA-BR-8680-01 X 108638641 108638641 G T GUCY2F Missense_Mutation p.L785I 0.79 tolerated(1) probably_damaging(0.998) TCGA-BR-8680-01 X 109696171 109696171 G T RGAG1 Missense_Mutation p.D776Y 0.85 deleterious(0.02) possibly_damaging(0.838) TCGA-BR-8680-01 X 110385348 110385348 G A PAK3 Missense_Mutation p.R67H 0.77 deleterious(0) probably_damaging(0.979) TCGA-BR-8680-01 X 110406810 110406810 T G PAK3 Silent p.V243V 0.72 TCGA-BR-8680-01 X 110544882 110544882 T G DCX 3'UTR 0.72 TCGA-BR-8680-01 X 110928252 110928252 G A ALG13 Missense_Mutation p.E102K 0.81 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BR-8680-01 X 110988113 110988113 C T ALG13 Silent p.S971S 0.70 TCGA-BR-8680-01 X 111155848 111155848 G A TRPC5 Missense_Mutation p.R191C 0.81 deleterious(0.03) probably_damaging(1) TCGA-BR-8680-01 X 114082759 114082759 T G HTR2C Missense_Mutation p.I181M 0.75 deleterious(0) probably_damaging(0.953) TCGA-BR-8680-01 X 114357648 114357648 G A LRCH2 Missense_Mutation p.R653C 0.91 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 X 115304594 115304594 C A AGTR2 Missense_Mutation p.S354Y 0.79 tolerated(1) benign(0.019) TCGA-BR-8680-01 X 117032741 117032741 C A KLHL13 3'UTR 0.88 TCGA-BR-8680-01 X 11778982 11778982 G A MSL3 Missense_Mutation p.R103H 0.65 tolerated(0.14) benign(0.001) TCGA-BR-8680-01 X 117805097 117805097 C T DOCK11 Missense_Mutation p.R1730C 0.76 deleterious(0) possibly_damaging(0.75) TCGA-BR-8680-01 X 118230472 118230472 C A KIAA1210 Missense_Mutation p.K417N 0.76 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 X 119673163 119673163 T G CUL4B Missense_Mutation p.K585N 0.76 tolerated(0.34) benign(0.045) TCGA-BR-8680-01 X 119694325 119694325 C A CUL4B Missense_Mutation p.D75Y 0.69 deleterious_low_confidence(0) benign(0.34) TCGA-BR-8680-01 X 119760099 119760099 A G C1GALT1C1 Missense_Mutation p.V308A 0.82 tolerated(0.23) benign(0.004) TCGA-BR-8680-01 X 123020225 123020225 G A XIAP Missense_Mutation p.R238Q 0.81 tolerated(0.67) benign(0) TCGA-BR-8680-01 X 123171427 123171427 A C STAG2 Silent p.A113A 0.82 TCGA-BR-8680-01 X 123202434 123202434 G A STAG2 Silent p.K762K 0.83 TCGA-BR-8680-01 X 123517913 123517913 A C TENM1 Missense_Mutation p.L2290V 0.78 tolerated(1) benign(0.031) TCGA-BR-8680-01 X 123538903 123538903 G A TENM1 Missense_Mutation p.S1790L 0.78 deleterious(0.03) benign(0.008) TCGA-BR-8680-01 X 123657246 123657246 G A TENM1 Missense_Mutation p.P1001S 0.84 tolerated(0.24) benign(0.013) TCGA-BR-8680-01 X 123870961 123870961 T G TENM1 Missense_Mutation p.K208Q 0.84 tolerated_low_confidence(0.53) benign(0.023) TCGA-BR-8680-01 X 12701697 12701697 C T FRMPD4 Silent p.G188G 0.74 TCGA-BR-8680-01 X 127186142 127186142 T C ACTRT1 Missense_Mutation p.D15G 0.77 deleterious(0.01) benign(0.031) TCGA-BR-8680-01 X 127186313 127186313 T C ACTRT1 5'UTR 0.60 TCGA-BR-8680-01 X 128599549 128599549 C T SMARCA1 Missense_Mutation p.R993Q 0.79 deleterious(0.02) probably_damaging(0.968) TCGA-BR-8680-01 X 128599864 128599864 C T SMARCA1 Missense_Mutation p.R925K 0.76 tolerated(1) benign(0.005) TCGA-BR-8680-01 X 128926655 128926655 G A SASH3 Missense_Mutation p.G215D 0.72 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 X 12905084 12905084 C A TLR7 Missense_Mutation p.S486Y 0.73 tolerated(0.08) benign(0.004) TCGA-BR-8680-01 X 12937551 12937551 T C TLR8 Missense_Mutation p.L131P 0.76 deleterious(0.04) possibly_damaging(0.781) TCGA-BR-8680-01 X 12940036 12940036 T G TLR8 Silent p.A959A 0.66 TCGA-BR-8680-01 X 132159805 132159805 C A USP26 Missense_Mutation p.R815I 0.81 tolerated(0.1) possibly_damaging(0.447) TCGA-BR-8680-01 X 132670056 132670056 A C GPC3 3'UTR 0.87 TCGA-BR-8680-01 X 132670062 132670062 A C GPC3 3'UTR 0.76 TCGA-BR-8680-01 X 133379644 133379644 G A CCDC160 Missense_Mutation p.A272T 0.91 deleterious(0.03) possibly_damaging(0.682) TCGA-BR-8680-01 X 133674439 133674439 G A MIR450A1 RNA 0.78 TCGA-BR-8680-01 X 134303569 134303569 A C CT55 Silent p.V76V 0.67 TCGA-BR-8680-01 X 134480958 134480958 C A ZNF449 5'UTR 0.55 TCGA-BR-8680-01 X 134495024 134495024 T G ZNF449 3'UTR 0.80 TCGA-BR-8680-01 X 134991090 134991090 C A SAGE1 Silent p.V503V 0.76 TCGA-BR-8680-01 X 134993842 134993842 A G SAGE1 Missense_Mutation p.T751A 0.77 tolerated(0.4) probably_damaging(0.991) TCGA-BR-8680-01 X 134994097 134994097 C T SAGE1 Nonsense_Mutation p.R836* 0.72 TCGA-BR-8680-01 X 135303041 135303041 A C MAP7D3 Missense_Mutation p.F790C 0.80 deleterious(0) probably_damaging(0.979) TCGA-BR-8680-01 X 135431650 135431650 C T GPR112 Silent p.L1929L 0.83 TCGA-BR-8680-01 X 135432563 135432563 C T GPR112 Missense_Mutation p.S2233L 0.87 tolerated(1) benign(0.002) TCGA-BR-8680-01 X 135443643 135443643 G A GPR112 Missense_Mutation p.A2392T 0.77 tolerated(0.21) benign(0.014) TCGA-BR-8680-01 X 135498724 135498724 C A GPR112 3'UTR 0.88 TCGA-BR-8680-01 X 135741442 135741442 C T CD40LG Silent p.C218C 0.75 TCGA-BR-8680-01 X 135754267 135754267 C A ARHGEF6 Missense_Mutation p.D683Y 0.80 deleterious(0) benign(0.403) TCGA-BR-8680-01 X 136113696 136113696 G A GPR101 Silent p.F46F 0.78 TCGA-BR-8680-01 X 138689852 138689852 C A MCF2 Missense_Mutation p.K572N 0.19 deleterious(0.01) possibly_damaging(0.493) TCGA-BR-8680-01 X 140967039 140967039 T G MAGEC3 Missense_Mutation p.S113A 0.41 deleterious_low_confidence(0.02) benign(0.097) TCGA-BR-8680-01 X 140996572 140996572 G T MAGEC1 Nonsense_Mutation p.E1128* 0.15 TCGA-BR-8680-01 X 140996702 140996702 G A MAGEC1 3'UTR 0.88 TCGA-BR-8680-01 X 142718309 142718309 C T SLITRK4 Missense_Mutation p.V206I 0.32 deleterious(0.02) probably_damaging(0.993) TCGA-BR-8680-01 X 142795585 142795585 C T SPANXN2 Silent p.P31P 0.81 TCGA-BR-8680-01 X 144337566 144337566 G A SPANXN1 3'UTR 0.67 TCGA-BR-8680-01 X 146295032 146307394 X:146295032-146307394 - MIR513A1 large deletion 0.32 TCGA-BR-8680-01 X 1464251 1464251 C T IL3RA Missense_Mutation p.A36V 0.04 tolerated(0.26) benign(0.024) TCGA-BR-8680-01 X 147106456 147106456 G A FMR1NB Missense_Mutation p.R235Q 0.76 tolerated(0.44) benign(0.417) TCGA-BR-8680-01 X 147743734 147743734 T C AFF2 Silent p.D162D 0.80 TCGA-BR-8680-01 X 148038020 148038020 C T AFF2 Silent p.G815G 0.80 TCGA-BR-8680-01 X 148059926 148059926 T - AFF2 Frame_Shift_Del p.F1171Lfs*3 0.44 TCGA-BR-8680-01 X 148797493 148797493 G A MAGEA11 Missense_Mutation p.R116K 0.84 tolerated(1) benign(0.144) TCGA-BR-8680-01 X 150840971 150840971 T C PASD1 Missense_Mutation p.I585T 0.25 deleterious(0) benign(0.188) TCGA-BR-8680-01 X 150891227 150891227 A C FATE1 Missense_Mutation p.Q183P 0.52 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 X 151820165 151820165 C T GABRQ Missense_Mutation p.R360C 0.87 deleterious(0.04) probably_damaging(0.976) TCGA-BR-8680-01 X 15267048 15267048 A G ASB9 Missense_Mutation p.V193A 0.50 tolerated(0.1) benign(0.128) TCGA-BR-8680-01 X 152815144 152815144 G A ATP2B3 Missense_Mutation p.D510N 0.56 tolerated(0.15) benign(0.013) TCGA-BR-8680-01 X 153001668 153001668 C T ABCD1 Missense_Mutation p.A395V 0.83 deleterious(0.01) benign(0.091) TCGA-BR-8680-01 X 153046776 153046776 G T SRPK3 Missense_Mutation p.Q55H 0.16 deleterious(0) probably_damaging(0.983) TCGA-BR-8680-01 X 153049822 153049822 C T SRPK3 Silent p.I407I 0.86 TCGA-BR-8680-01 X 153133495 153133495 C T L1CAM Missense_Mutation p.E596K 0.85 tolerated(1) benign(0.008) TCGA-BR-8680-01 X 153171980 153171980 C T AVPR2 Missense_Mutation p.A305V 0.81 tolerated(0.45) benign(0.067) TCGA-BR-8680-01 X 153228874 153228874 C A HCFC1 Missense_Mutation p.D172Y 0.56 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 X 15333600 15333600 C T ASB11 Missense_Mutation p.G43E 0.62 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 X 153416361 153416361 T G OPN1LW Missense_Mutation p.S116A 0.22 tolerated(0.5) benign(0.045) TCGA-BR-8680-01 X 153549110 153549110 G A TKTL1 Missense_Mutation p.V346M 0.52 deleterious(0.04) probably_damaging(0.986) TCGA-BR-8680-01 X 153558131 153558131 T G TKTL1 3'UTR 0.83 TCGA-BR-8680-01 X 153693557 153693557 C T PLXNA3 Missense_Mutation p.A747V 0.30 tolerated(0.1) benign(0.08) TCGA-BR-8680-01 X 153944425 153944425 G A GAB3 Silent p.F84F 0.86 TCGA-BR-8680-01 X 153993212 153993212 C T DKC1 Missense_Mutation p.R19W 0.89 deleterious_low_confidence(0) benign(0.333) TCGA-BR-8680-01 X 153995639 153995639 G A DKC1 Missense_Mutation p.D208N 0.28 deleterious(0.05) benign(0.357) TCGA-BR-8680-01 X 154185408 154185408 C A F8 Nonsense_Mutation p.E526* 0.22 TCGA-BR-8680-01 X 154194944 154194944 A G F8 Missense_Mutation p.V343A 0.89 deleterious(0.01) possibly_damaging(0.796) TCGA-BR-8680-01 X 15474167 15474167 G A PIR Missense_Mutation p.A95V 0.69 deleterious(0.02) benign(0.284) TCGA-BR-8680-01 X 16141926 16141926 A G GRPR 5'UTR 0.73 TCGA-BR-8680-01 X 16170750 16170750 T C GRPR Silent p.C379C 0.59 TCGA-BR-8680-01 X 1742126 1742126 C T ASMT Missense_Mutation p.A55V 0.29 deleterious(0) benign(0.053) TCGA-BR-8680-01 X 17745600 17745600 C T NHS Missense_Mutation p.S1104L 0.66 tolerated(0.08) benign(0.294) TCGA-BR-8680-01 X 18938281 18938281 G A PHKA2 Missense_Mutation p.S611L 0.72 deleterious(0) probably_damaging(0.995) TCGA-BR-8680-01 X 19410570 19410570 C T MAP3K15 Missense_Mutation p.R739Q 0.78 tolerated(0.13) benign(0.006) TCGA-BR-8680-01 X 19626054 19626054 A C SH3KBP1 Splice_Site p.X335_splice 0.74 TCGA-BR-8680-01 X 20195149 20195149 C T RPS6KA3 Missense_Mutation p.R300Q 0.61 tolerated(0.17) benign(0.237) TCGA-BR-8680-01 X 2139159 2139159 T C DHRSX Missense_Mutation p.T306A 0.40 tolerated(0.85) benign(0.02) TCGA-BR-8680-01 X 23019630 23019630 G A DDX53 Missense_Mutation p.D486N 0.68 tolerated(0.06) possibly_damaging(0.777) TCGA-BR-8680-01 X 2326792 2326792 C T DHRSX Missense_Mutation p.D94N 0.22 tolerated(0.47) benign(0.009) TCGA-BR-8680-01 X 23397823 23397823 T C PTCHD1 Missense_Mutation p.V156A 0.70 tolerated(0.49) benign(0.003) TCGA-BR-8680-01 X 23411641 23411641 G T PTCHD1 Missense_Mutation p.R669M 0.58 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 X 23689659 23689659 G A PRDX4 Silent p.A85A 0.56 TCGA-BR-8680-01 X 24751894 24751894 T C POLA1 Silent p.C592C 0.91 TCGA-BR-8680-01 X 24751916 24751916 G T POLA1 Nonsense_Mutation p.E600* 0.42 TCGA-BR-8680-01 X 30237408 30237408 G T MAGEB2 Missense_Mutation p.E237D 0.42 deleterious(0.03) benign(0.326) TCGA-BR-8680-01 X 30255112 30255112 G T MAGEB3 3'UTR 0.80 TCGA-BR-8680-01 X 30322625 30322625 C A NR0B1 3'UTR 0.65 TCGA-BR-8680-01 X 31164479 31164479 G T DMD Missense_Mutation p.S3617Y 0.32 possibly_damaging(0.781) TCGA-BR-8680-01 X 32235105 32235105 T G DMD Missense_Mutation p.E2122D 0.82 benign(0.002) TCGA-BR-8680-01 X 32328264 32328264 G T DMD Missense_Mutation p.L2018I 0.33 possibly_damaging(0.567) TCGA-BR-8680-01 X 36007570 36007570 A C CXorf22 Missense_Mutation p.I950L 0.47 tolerated(0.27) benign(0.07) TCGA-BR-8680-01 X 37545370 37545370 G A XK Silent p.Q52Q 0.83 TCGA-BR-8680-01 X 37651246 37651246 C T CYBB Nonsense_Mutation p.R91* 0.85 TCGA-BR-8680-01 X 37665699 37665699 G A CYBB Silent p.L458L 0.41 TCGA-BR-8680-01 X 37984742 37984742 G A SYTL5 Missense_Mutation p.R700H 0.36 deleterious(0) probably_damaging(0.998) TCGA-BR-8680-01 X 38158349 38158349 G A RPGR Missense_Mutation p.R369C 0.38 possibly_damaging(0.835) TCGA-BR-8680-01 X 41000424 41000424 G T USP9X Nonsense_Mutation p.E326* 0.44 TCGA-BR-8680-01 X 41587118 41587118 A C GPR82 Missense_Mutation p.N280T 0.07 deleterious(0.02) benign(0.001) TCGA-BR-8680-01 X 45605641 45605641 G A MIR221 RNA 0.28 TCGA-BR-8680-01 X 47041358 47041358 G A RBM10 Missense_Mutation p.D568N 0.38 deleterious(0) probably_damaging(0.996) TCGA-BR-8680-01 X 47044457 47044457 G A RBM10 Missense_Mutation p.A652T 0.40 deleterious(0) benign(0.395) TCGA-BR-8680-01 X 47065665 47065665 G A UBA1 Missense_Mutation p.R587H 0.62 deleterious(0.01) benign(0.351) TCGA-BR-8680-01 X 47072566 47072566 G A UBA1 Missense_Mutation p.A942T 0.72 deleterious(0.01) probably_damaging(0.928) TCGA-BR-8680-01 X 47272103 47272103 A G ZNF157 Missense_Mutation p.T211A 0.76 tolerated(0.26) possibly_damaging(0.49) TCGA-BR-8680-01 X 47308810 47308810 C A ZNF41 Missense_Mutation p.R120I 0.42 tolerated(0.33) benign(0.277) TCGA-BR-8680-01 X 47464761 47464761 A C SYN1 Missense_Mutation p.F182C 0.11 deleterious(0) probably_damaging(0.998) TCGA-BR-8680-01 X 47500810 47500810 G A ELK1 Silent p.L11L 0.79 TCGA-BR-8680-01 X 47919043 47919043 T G ZNF630 Missense_Mutation p.N263T 0.19 tolerated(0.38) benign(0.018) TCGA-BR-8680-01 X 48632033 48632033 T C GLOD5 3'UTR 0.55 TCGA-BR-8680-01 X 48760018 48760018 G A PQBP1 Missense_Mutation p.R196Q 0.59 tolerated(0.07) benign(0.072) TCGA-BR-8680-01 X 48772563 48772563 T G PIM2 Missense_Mutation p.E110A 0.57 deleterious(0.01) benign(0.326) TCGA-BR-8680-01 X 48791968 48791968 C G OTUD5 Splice_Site p.X309_splice 0.37 TCGA-BR-8680-01 X 48792100 48792100 T C OTUD5 Missense_Mutation p.D265G 0.37 deleterious(0) probably_damaging(0.998) TCGA-BR-8680-01 X 48825826 48825826 C T KCND1 Missense_Mutation p.D285N 0.72 tolerated(0.14) benign(0.028) TCGA-BR-8680-01 X 49081339 49081339 G T CACNA1F Nonsense_Mutation p.C598* 0.69 TCGA-BR-8680-01 X 50028141 50028141 A C CCNB3 5'UTR 0.53 TCGA-BR-8680-01 X 50052637 50052637 A C CCNB3 Missense_Mutation p.I490L 0.71 tolerated(0.44) benign(0.002) TCGA-BR-8680-01 X 50055601 50055601 A C CCNB3 Missense_Mutation p.K1131T 0.71 deleterious(0.01) benign(0.41) TCGA-BR-8680-01 X 50377847 50377847 C T SHROOM4 Missense_Mutation p.R409H 0.55 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 X 52674499 52674499 G A SSX7 Silent p.D187D 0.39 TCGA-BR-8680-01 X 53574690 53574690 A G HUWE1 Missense_Mutation p.V3527A 0.64 unknown(0) TCGA-BR-8680-01 X 53613488 53613488 T C HUWE1 Missense_Mutation p.T1596A 0.76 benign(0.064) TCGA-BR-8680-01 X 54114280 54114280 G T FAM120C Missense_Mutation p.P849T 0.72 deleterious(0) probably_damaging(0.913) TCGA-BR-8680-01 X 54159186 54159186 A C FAM120C Missense_Mutation p.S667R 0.69 deleterious(0) probably_damaging(0.965) TCGA-BR-8680-01 X 54496803 54496803 C T FGD1 Silent p.S249S 0.88 TCGA-BR-8680-01 X 54955213 54955213 G A TRO Missense_Mutation p.D686N 0.70 tolerated(0.17) unknown(0) TCGA-BR-8680-01 X 55479459 55479459 G A MAGEH1 Missense_Mutation p.A218T 0.67 tolerated_low_confidence(0.41) benign(0.015) TCGA-BR-8680-01 X 57021144 57021144 A G SPIN3 Silent p.N79N 0.62 TCGA-BR-8680-01 X 57619029 57619029 G A ZXDB Missense_Mutation p.G183D 0.47 deleterious(0) probably_damaging(0.983) TCGA-BR-8680-01 X 57935217 57935217 C T ZXDA Silent p.P546P 0.54 TCGA-BR-8680-01 X 5821576 5821576 G A NLGN4X Silent p.D381D 0.60 TCGA-BR-8680-01 X 591471 591471 T G SHOX 5'UTR 0.23 TCGA-BR-8680-01 X 591664 591664 C A SHOX Missense_Mutation p.S11Y 0.28 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BR-8680-01 X 601807 601807 G A SHOX Silent p.R206R 0.32 TCGA-BR-8680-01 X 6069042 6069042 C T NLGN4X Missense_Mutation p.E156K 0.73 tolerated(0.18) probably_damaging(0.946) TCGA-BR-8680-01 X 63412011 63412011 C A AMER1 Nonsense_Mutation p.E386* 0.58 TCGA-BR-8680-01 X 64936689 64936689 C T MSN Missense_Mutation p.R8C 0.74 deleterious(0) benign(0.12) TCGA-BR-8680-01 X 67935147 67935147 C T STARD8 Missense_Mutation p.P55S 0.89 deleterious(0) probably_damaging(0.998) TCGA-BR-8680-01 X 70331290 70331290 C A IL2RG Nonsense_Mutation p.E34* 0.73 TCGA-BR-8680-01 X 70597031 70597031 G A TAF1 Missense_Mutation p.R255Q 0.80 deleterious(0.01) possibly_damaging(0.755) TCGA-BR-8680-01 X 70601751 70601751 G A TAF1 Missense_Mutation p.D527N 0.64 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 X 70608626 70608626 C T TAF1 Missense_Mutation p.R890C 0.80 deleterious(0) probably_damaging(0.999) TCGA-BR-8680-01 X 72433253 72433253 C T NAP1L2 Missense_Mutation p.R359Q 0.69 deleterious(0.02) benign(0.116) TCGA-BR-8680-01 X 72433985 72433985 A C NAP1L2 Missense_Mutation p.L115R 0.62 deleterious(0) probably_damaging(1) TCGA-BR-8680-01 X 73041814 73041814 C T XIST RNA 0.62 TCGA-BR-8680-01 X 73045047 73045047 C T XIST RNA 0.64 TCGA-BR-8680-01 X 73048994 73048994 A G XIST RNA 0.58 TCGA-BR-8680-01 X 73064507 73064507 T C XIST RNA 0.71 TCGA-BR-8680-01 X 73064940 73064940 A G XIST RNA 0.75 TCGA-BR-8680-01 X 73811613 73811613 G A RLIM Nonsense_Mutation p.R513* 0.67 TCGA-BR-8680-01 X 73965454 73965454 G A KIAA2022 Missense_Mutation p.A11V 0.64 deleterious_low_confidence(0) possibly_damaging(0.623) TCGA-BR-8680-01 X 76938401 76938401 T G ATRX Missense_Mutation p.S783R 0.65 benign(0.221) TCGA-BR-8680-01 X 77096753 77096753 T C MAGT1 Silent p.G329G 0.80 TCGA-BR-8680-01 X 77387062 77387062 A C TAF9B 3'UTR 0.68 TCGA-BR-8680-01 X 78426502 78426502 A G GPR174 5'UTR 0.44 TCGA-BR-8680-01 X 85404080 85404080 C T DACH2 Silent p.F152F 0.66 TCGA-BR-8680-01 X 86087245 86087245 T C DACH2 3'UTR 0.89 TCGA-BR-8680-01 X 86888822 86888822 A C KLHL4 Missense_Mutation p.E541D 0.57 deleterious(0) probably_damaging(0.98) TCGA-BR-8680-01 X 88008703 88008703 T C CPXCR1 Silent p.I96I 0.83 TCGA-BR-8680-01 X 8993538 8993538 T G FAM9B 3'UTR 0.79 TCGA-BR-8680-01 X 92964345 92964345 A C FAM133A 5'UTR 0.64 TCGA-BR-8680-01 X 9679717 9679717 G A TBL1X Silent p.T502T 0.74 TCGA-BR-8680-01 X 9863383 9863383 C T SHROOM2 Missense_Mutation p.P479S 0.78 tolerated(0.32) benign(0.005) TCGA-BR-8680-01 X 99662442 99662442 T G PCDH19 Missense_Mutation p.Q385P 0.17 deleterious(0.01) probably_damaging(0.968) TCGA-BR-8680-01 X 99920638 99920638 C A SRPX2 Missense_Mutation p.F255L 0.80 deleterious(0) probably_damaging(0.992) TCGA-BR-8680-01 Y 14898521 14898521 C A USP9Y Missense_Mutation p.H1117N 0.75 tolerated(1) benign(0) TCGA-BR-8680-01 Y 15026499 15026499 C A DDX3Y Missense_Mutation p.L233I 0.58 deleterious(0) probably_damaging(0.953) TCGA-BR-8680-01 Y 16941710 16941710 C T NLGN4Y Silent p.V304V 0.79 TCGA-BR-8680-01 Y 24457560 24457560 G A RBMY2FP RNA 0.76 TCGA-BR-8680-01 Y 2848017 2848017 G T ZFY Nonsense_Mutation p.E797* 0.09 TCGA-BR-8680-01 Y 3447605 3447605 G A TGIF2LY Missense_Mutation p.R107H 0.68 deleterious(0.01) probably_damaging(0.998) TCGA-BR-8680-01 Y 4967620 4967620 A G PCDH11Y Silent p.K667K 0.57 TCGA-BR-8680-01 Y 4972424 4972424 A G PCDH11Y 3'UTR 0.71 TCGA-BR-8680-01 Y 7239831 7239831 C T PRKY RNA 0.73 TCGA-BR-8682-01 10 126517346 126517346 C T FAM175B Silent p.L160L 0.07 TCGA-BR-8682-01 10 21097582 21097582 G A NEBL Missense_Mutation p.A873V 0.22 deleterious(0.03) benign(0.022) TCGA-BR-8682-01 10 50530877 50530877 C T C10orf71 Missense_Mutation p.A96V 0.16 deleterious(0) probably_damaging(1) TCGA-BR-8682-01 10 50531976 50531976 C A C10orf71 Missense_Mutation p.S462R 0.21 deleterious(0.03) possibly_damaging(0.684) TCGA-BR-8682-01 10 7604893 7604893 G A ITIH5 3'UTR 0.19 TCGA-BR-8682-01 10 7684001 7684001 C T ITIH5 Missense_Mutation p.R63H 0.19 deleterious(0.04) possibly_damaging(0.853) TCGA-BR-8682-01 10 86008690 86008690 C T RGR Silent p.Y87Y 0.13 TCGA-BR-8682-01 10 97444352 97444352 A T TCTN3 Silent p.T333T 0.16 TCGA-BR-8682-01 12 112711519 112711519 G C HECTD4 Missense_Mutation p.Q484E 0.21 possibly_damaging(0.749) TCGA-BR-8682-01 12 39154659 39154659 G A CPNE8 Nonsense_Mutation p.R238* 0.22 TCGA-BR-8682-01 12 50052242 50052242 C T FMNL3 Silent p.A196A 0.10 TCGA-BR-8682-01 12 5672628 5672628 A C ANO2 Missense_Mutation p.F945C 0.18 deleterious(0) probably_damaging(0.999) TCGA-BR-8682-01 13 27256755 27256755 C T WASF3 Missense_Mutation p.A332V 0.16 tolerated(0.48) benign(0.009) TCGA-BR-8682-01 13 36410272 36410272 G A DCLK1 Missense_Mutation p.S376L 0.17 tolerated(0.16) benign(0.01) TCGA-BR-8682-01 13 96237021 96237021 G A DZIP1 Silent p.G831G 0.20 TCGA-BR-8682-01 14 61186876 61186876 C T SIX4 Missense_Mutation p.G384E 0.18 deleterious(0) probably_damaging(0.999) TCGA-BR-8682-01 14 61997205 61997205 C T RP11-47I22.4 Silent p.H56H 0.24 TCGA-BR-8682-01 15 81428869 81428869 G A C15orf26 Missense_Mutation p.V58I 0.18 tolerated(0.35) benign(0.022) TCGA-BR-8682-01 16 240114 240114 C T LUC7L Missense_Mutation p.R276H 0.23 tolerated(0.07) unknown(0) TCGA-BR-8682-01 16 347940 347940 C T AXIN1 Silent p.A522A 0.21 TCGA-BR-8682-01 16 47694577 47694578 - T PHKB Frame_Shift_Ins p.K683* 0.17 TCGA-BR-8682-01 16 51174418 51174418 G A SALL1 Missense_Mutation p.T572M 0.22 deleterious(0.02) possibly_damaging(0.815) TCGA-BR-8682-01 16 67189149 67189149 G A TRADD Nonsense_Mutation p.R160* 0.33 TCGA-BR-8682-01 16 855739 855739 G A PRR25 Silent p.P99P 0.24 TCGA-BR-8682-01 17 38904508 38904508 C T KRT25 3'UTR 0.19 TCGA-BR-8682-01 17 39280351 39280352 AG - KRTAP4-12 Frame_Shift_Del p.S8Cfs*4 0.14 TCGA-BR-8682-01 17 47903390 47903390 A C KAT7 Missense_Mutation p.K503N 0.24 deleterious(0) probably_damaging(0.982) TCGA-BR-8682-01 17 73819366 73819367 AG - UNK Frame_Shift_Del p.E681Gfs*6 0.20 TCGA-BR-8682-01 17 7577022 7577022 G A TP53 Nonsense_Mutation p.R306* 0.23 TCGA-BR-8682-01 17 76967590 76967592 GAG - LGALS3BP 3'UTR 0.26 TCGA-BR-8682-01 19 17994560 17994560 C T SLC5A5 Missense_Mutation p.P438L 0.26 deleterious(0) possibly_damaging(0.796) TCGA-BR-8682-01 19 18378091 18378091 C T KIAA1683 Missense_Mutation p.E87K 0.25 deleterious(0.02) possibly_damaging(0.526) TCGA-BR-8682-01 19 31040026 31040026 C T ZNF536 Missense_Mutation p.S1167L 0.08 tolerated_low_confidence(0.07) benign(0.214) TCGA-BR-8682-01 19 37905170 37905171 - A ZNF569 Frame_Shift_Ins p.S132Ffs*7 0.16 TCGA-BR-8682-01 19 38876902 38876902 G A GGN Missense_Mutation p.R334W 0.22 deleterious_low_confidence(0) unknown(0) TCGA-BR-8682-01 19 7132311 7132311 G A INSR Silent p.V900V 0.09 TCGA-BR-8682-01 19 9204290 9204290 G A OR1M1 Missense_Mutation p.V124M 0.16 deleterious(0.03) possibly_damaging(0.64) TCGA-BR-8682-01 1 111737247 111737247 G A DENND2D Silent p.A249A 0.31 TCGA-BR-8682-01 1 15789290 15789290 C T CELA2A Missense_Mutation p.S97L 0.10 deleterious(0) possibly_damaging(0.845) TCGA-BR-8682-01 1 246729331 246729331 G A TFB2M Missense_Mutation p.P37L 0.23 tolerated(0.35) benign(0.007) TCGA-BR-8682-01 1 53684566 53684566 C T C1orf123 Silent p.S40S 0.21 TCGA-BR-8682-01 1 57399077 57399077 C A C8B Nonsense_Mutation p.E495* 0.22 TCGA-BR-8682-01 20 16336990 16336990 G A KIF16B Silent p.F1202F 0.11 TCGA-BR-8682-01 20 30584454 30584454 G A XKR7 Missense_Mutation p.A312T 0.37 deleterious(0) probably_damaging(1) TCGA-BR-8682-01 20 35176528 35176528 A C MYL9 Missense_Mutation p.K93T 0.07 deleterious(0) benign(0) TCGA-BR-8682-01 20 39832810 39832810 G T ZHX3 Missense_Mutation p.N249K 0.13 tolerated(0.91) benign(0) TCGA-BR-8682-01 20 40827893 40827893 G A PTPRT Silent p.D826D 0.03 TCGA-BR-8682-01 20 46266482 46266482 C T NCOA3 Missense_Mutation p.H823Y 0.12 deleterious(0.03) benign(0.065) TCGA-BR-8682-01 20 9561532 9561532 C T PAK7 Missense_Mutation p.G84S 0.23 tolerated(0.16) probably_damaging(0.999) TCGA-BR-8682-01 21 43805630 43805630 C A TMPRSS3 Missense_Mutation p.D154Y 0.19 tolerated(0.05) benign(0.278) TCGA-BR-8682-01 2 120236430 120236430 C T SCTR Silent p.E86E 0.19 TCGA-BR-8682-01 2 191934456 191934456 G A STAT4 Silent p.D169D 0.17 TCGA-BR-8682-01 2 202050848 202050848 G A CASP10 Splice_Site p.X116_splice 0.36 TCGA-BR-8682-01 2 32422820 32422820 G A SLC30A6 Missense_Mutation p.R237Q 0.15 deleterious(0) probably_damaging(0.967) TCGA-BR-8682-01 2 32475567 32475567 T C NLRC4 Missense_Mutation p.S456G 0.23 tolerated(0.19) benign(0.026) TCGA-BR-8682-01 2 50733718 50733718 G C NRXN1 Silent p.L844L 0.19 TCGA-BR-8682-01 2 69093087 69093087 G A BMP10 Silent p.N317N 0.20 TCGA-BR-8682-01 3 13916592 13916592 C T WNT7A Silent p.A50A 0.28 TCGA-BR-8682-01 3 155198891 155198891 G A PLCH1 Missense_Mutation p.R1650W 0.20 deleterious(0) probably_damaging(0.972) TCGA-BR-8682-01 3 48664446 48664446 C T SLC26A6 Missense_Mutation p.G646S 0.17 tolerated(0.23) benign(0.034) TCGA-BR-8682-01 3 78763664 78763664 G A ROBO1 Nonsense_Mutation p.R310* 0.24 TCGA-BR-8682-01 4 176555966 176555966 T A GPM6A 3'UTR 0.31 TCGA-BR-8682-01 4 25780725 25780725 A - SEL1L3 Frame_Shift_Del p.F853Sfs*15 0.19 TCGA-BR-8682-01 4 38690545 38690545 C T KLF3 Missense_Mutation p.R133W 0.25 deleterious(0.05) possibly_damaging(0.898) TCGA-BR-8682-01 4 83406787 83406787 G A TMEM150C Silent p.G209G 0.29 TCGA-BR-8682-01 4 84376457 84376457 A C HELQ Intron 0.22 TCGA-BR-8682-01 5 131822699 131822699 G T IRF1 Nonsense_Mutation p.S104* 0.05 TCGA-BR-8682-01 5 132545910 132545910 G A FSTL4 Silent p.D563D 0.13 TCGA-BR-8682-01 5 153085359 153085359 A T GRIA1 Nonsense_Mutation p.K529* 0.22 TCGA-BR-8682-01 6 112671190 112671190 C T RFPL4B Missense_Mutation p.R94W 0.22 tolerated(0.2) benign(0.003) TCGA-BR-8682-01 6 126080849 126080849 G A HEY2 Silent p.P305P 0.27 TCGA-BR-8682-01 6 132649655 132649655 C T MOXD1 Missense_Mutation p.D248N 0.25 tolerated(0.18) possibly_damaging(0.853) TCGA-BR-8682-01 6 144086652 144086652 G A PHACTR2 Missense_Mutation p.E317K 0.17 deleterious_low_confidence(0.03) benign(0.012) TCGA-BR-8682-01 6 31901495 31901495 C T CFB Missense_Mutation p.T122M 0.27 tolerated(0.09) benign(0.185) TCGA-BR-8682-01 6 32017048 32017048 C T TNXB 5'Flank 0.23 TCGA-BR-8682-01 6 41309565 41309565 G A NCR2 Missense_Mutation p.R143H 0.27 tolerated(0.71) benign(0) TCGA-BR-8682-01 7 116199088 116199088 C T CAV1 Missense_Mutation p.T95M 0.46 deleterious(0) probably_damaging(0.954) TCGA-BR-8682-01 7 19184993 19184993 G T FERD3L 5'UTR 0.22 TCGA-BR-8682-01 7 38725645 38725645 G A FAM183B 5'UTR 0.18 TCGA-BR-8682-01 7 48431656 48431656 C T ABCA13 Silent p.T3931T 0.11 TCGA-BR-8682-01 7 50514267 50514267 A T FIGNL1 Missense_Mutation p.V240E 0.39 tolerated(0.68) benign(0.051) TCGA-BR-8682-01 7 80374186 80374186 G A SEMA3C 3'UTR 0.06 TCGA-BR-8682-01 7 99668616 99668616 G C ZNF3 3'UTR 0.12 TCGA-BR-8682-01 8 144810314 144810314 G A FAM83H Silent p.D439D 0.11 TCGA-BR-8682-01 8 72970030 72970030 C T TRPA1 Missense_Mutation p.D339N 0.23 deleterious(0.04) probably_damaging(0.919) TCGA-BR-8682-01 8 85774574 85774574 G A RALYL Missense_Mutation p.V166I 0.12 deleterious(0.02) benign(0.328) TCGA-BR-8682-01 9 100616580 100616580 G A FOXE1 Silent p.A128A 0.52 TCGA-BR-8682-01 9 138011806 138011806 G A OLFM1 Missense_Mutation p.V396I 0.41 tolerated(0.23) possibly_damaging(0.751) TCGA-BR-8682-01 X 118219449 118219449 G T KIAA1210 Missense_Mutation p.A1582E 0.52 deleterious(0.04) benign(0.002) TCGA-BR-8682-01 X 73069809 73069809 C T XIST RNA 0.62 TCGA-BR-8683-01 10 104136717 104136717 C T GBF1 Silent p.G1437G 0.13 TCGA-BR-8683-01 10 104377323 104377323 G A SUFU Intron 0.19 TCGA-BR-8683-01 10 135053288 135053288 G T VENTX Missense_Mutation p.S117I 0.22 deleterious(0) possibly_damaging(0.793) TCGA-BR-8683-01 10 55826517 55826517 T A PCDH15 Missense_Mutation p.K740N 0.11 deleterious(0.03) benign(0.043) TCGA-BR-8683-01 10 70509403 70509403 C T CCAR1 Missense_Mutation p.P360L 0.12 deleterious(0.01) probably_damaging(0.981) TCGA-BR-8683-01 10 75009431 75009431 A G MRPS16 3'UTR 0.17 TCGA-BR-8683-01 10 7771981 7771981 T A ITIH2 Missense_Mutation p.F449Y 0.21 tolerated(0.91) probably_damaging(0.989) TCGA-BR-8683-01 11 123753982 123753982 A G TMEM225 Missense_Mutation p.C181R 0.11 tolerated(0.64) possibly_damaging(0.831) TCGA-BR-8683-01 11 123847713 123847713 A C OR10S1 Missense_Mutation p.V229G 0.13 deleterious(0.01) benign(0.001) TCGA-BR-8683-01 11 125864176 125864176 T C CDON Intron 0.12 TCGA-BR-8683-01 11 35453862 35453862 C T PAMR1 3'UTR 0.14 TCGA-BR-8683-01 11 36595009 36595009 C A RAG1 Missense_Mutation p.S52Y 0.13 deleterious_low_confidence(0.01) probably_damaging(0.974) TCGA-BR-8683-01 11 45928156 45928156 G C C11orf94 Silent p.P87P 0.18 TCGA-BR-8683-01 11 60476241 60476241 A G MS4A8 Missense_Mutation p.Y174C 0.16 tolerated(0.14) possibly_damaging(0.86) TCGA-BR-8683-01 11 608501 608501 A G PHRF1 Silent p.G1014G 0.10 TCGA-BR-8683-01 11 70282581 70282581 C T CTTN 3'UTR 0.09 TCGA-BR-8683-01 11 72422489 72422489 A C ARAP1 Missense_Mutation p.F360V 0.09 deleterious(0) probably_damaging(0.997) TCGA-BR-8683-01 11 74800351 74800351 G T OR2AT4 Missense_Mutation p.H136Q 0.13 tolerated(0.05) possibly_damaging(0.827) TCGA-BR-8683-01 12 101520836 101520836 C T ANO4 Silent p.N917N 0.14 TCGA-BR-8683-01 12 113424902 113424902 C T OAS2 Silent p.L79L 0.11 TCGA-BR-8683-01 12 117658007 117658007 C T NOS1 Missense_Mutation p.G1382E 0.12 tolerated(0.31) possibly_damaging(0.836) TCGA-BR-8683-01 12 125834316 125834316 T C TMEM132B Missense_Mutation p.I124T 0.23 deleterious(0) probably_damaging(0.928) TCGA-BR-8683-01 12 131466566 131466566 C T GPR133 Missense_Mutation p.R150W 0.13 deleterious(0) probably_damaging(0.993) TCGA-BR-8683-01 12 25254154 25254154 G A LRMP Missense_Mutation p.V262I 0.14 deleterious(0.03) probably_damaging(0.999) TCGA-BR-8683-01 12 57110008 57110008 G A NACA Intron 0.17 TCGA-BR-8683-01 12 58022543 58022543 G T B4GALNT1 Missense_Mutation p.R319S 0.12 tolerated(0.52) benign(0.02) TCGA-BR-8683-01 12 94603463 94603463 C T PLXNC1 Nonsense_Mutation p.R513* 0.18 TCGA-BR-8683-01 13 61987146 61987146 T C PCDH20 Silent p.K362K 0.15 TCGA-BR-8683-01 13 73329385 73329385 T G BORA 3'UTR 0.20 TCGA-BR-8683-01 13 86368485 86368485 C T SLITRK6 Missense_Mutation p.S720N 0.14 tolerated(0.36) benign(0.025) TCGA-BR-8683-01 14 106068055 106068056 TG - IGHE Frame_Shift_Del p.Q4Efs*166 0.16 TCGA-BR-8683-01 14 21991438 21991438 T C SALL2 Silent p.A808A 0.17 TCGA-BR-8683-01 14 34269261 34269261 C T NPAS3 Missense_Mutation p.S583L 0.25 tolerated(0.55) possibly_damaging(0.885) TCGA-BR-8683-01 14 64556322 64556322 T G SYNE2 Missense_Mutation p.S3901A 0.34 benign(0.009) TCGA-BR-8683-01 14 70826374 70826374 C T COX16 5'UTR 0.12 TCGA-BR-8683-01 14 81744110 81744110 T G STON2 Missense_Mutation p.K515N 0.28 deleterious(0.01) probably_damaging(0.991) TCGA-BR-8683-01 14 94847443 94847443 C T SERPINA1 Missense_Mutation p.E228K 0.38 tolerated(0.96) benign(0.002) TCGA-BR-8683-01 15 25318336 25318336 G A SNORD116-9 RNA 0.12 TCGA-BR-8683-01 15 45428813 45428813 G A DUOX1 Missense_Mutation p.V338I 0.10 tolerated(0.11) benign(0.03) TCGA-BR-8683-01 15 66729154 66729154 G C MAP2K1 Missense_Mutation p.C121S 0.19 deleterious(0) probably_damaging(0.996) TCGA-BR-8683-01 15 90226909 90226909 C T PEX11A Missense_Mutation p.R148Q 0.10 tolerated(1) benign(0.001) TCGA-BR-8683-01 16 27752044 27752044 G A KIAA0556 Missense_Mutation p.R809Q 0.18 tolerated(0.18) benign(0.045) TCGA-BR-8683-01 16 29853242 29853242 C A MVP Silent p.V481V 0.14 TCGA-BR-8683-01 16 68055970 68055970 G A DDX28 Missense_Mutation p.A379V 0.13 tolerated(0.21) benign(0.004) TCGA-BR-8683-01 16 711480 711480 G T WDR90 Missense_Mutation p.D1218Y 0.13 deleterious(0) probably_damaging(0.915) TCGA-BR-8683-01 16 775269 775269 G C CCDC78 Missense_Mutation p.P154A 0.10 tolerated(0.07) possibly_damaging(0.765) TCGA-BR-8683-01 17 10216579 10216579 G A MYH13 Silent p.A1359A 0.10 TCGA-BR-8683-01 17 13980159 13980159 A G COX10 Silent p.E95E 0.23 TCGA-BR-8683-01 17 28886669 28886669 C T TBC1D29 5'UTR 0.16 TCGA-BR-8683-01 17 35696783 35696784 - T ACACA Frame_Shift_Ins p.T23Dfs*18 0.23 TCGA-BR-8683-01 17 39183049 39183049 C T KRTAP1-5 Missense_Mutation p.R120H 0.16 deleterious(0.02) benign(0.313) TCGA-BR-8683-01 17 48252711 48252711 C T SGCA Silent p.T359T 0.43 TCGA-BR-8683-01 17 73915948 73915948 T A FBF1 Missense_Mutation p.I632F 0.16 deleterious(0) possibly_damaging(0.571) TCGA-BR-8683-01 17 7577606 7577606 A - TP53 Frame_Shift_Del p.G226Afs*21 0.25 TCGA-BR-8683-01 17 8792137 8792137 C A PIK3R5 Nonsense_Mutation p.E323* 0.16 TCGA-BR-8683-01 18 3742442 3742442 A G DLGAP1 Missense_Mutation p.S415P 0.15 tolerated(0.33) benign(0.44) TCGA-BR-8683-01 18 60036280 60036280 C T TNFRSF11A Missense_Mutation p.P377L 0.21 deleterious(0) probably_damaging(1) TCGA-BR-8683-01 18 7231917 7231917 G A LRRC30 Missense_Mutation p.A261T 0.54 deleterious(0.01) probably_damaging(0.998) TCGA-BR-8683-01 19 15636337 15636337 C T CYP4F22 Missense_Mutation p.R64W 0.33 tolerated(0.07) possibly_damaging(0.803) TCGA-BR-8683-01 19 20808009 20808009 C A ZNF626 Missense_Mutation p.G225V 0.21 deleterious(0.02) probably_damaging(1) TCGA-BR-8683-01 19 21720043 21720043 C T ZNF429 Silent p.P396P 0.18 TCGA-BR-8683-01 19 2247812 2247812 C G SF3A2 Missense_Mutation p.P221R 0.13 deleterious_low_confidence(0) unknown(0) TCGA-BR-8683-01 19 3623842 3623842 C T CACTIN Silent p.T162T 0.16 TCGA-BR-8683-01 19 36611658 36611658 C T TBCB Missense_Mutation p.S102F 0.10 deleterious(0.03) benign(0.057) TCGA-BR-8683-01 19 39805434 39805434 C T LRFN1 Silent p.A181A 0.20 TCGA-BR-8683-01 19 41307124 41307124 G A EGLN2 Missense_Mutation p.G216D 0.12 tolerated(0.48) benign(0.002) TCGA-BR-8683-01 19 54760505 54760505 C T LILRB5 Missense_Mutation p.A68T 0.18 tolerated(0.44) benign(0.004) TCGA-BR-8683-01 19 55447693 55447693 G A NLRP7 Missense_Mutation p.R746C 0.24 tolerated(0.08) possibly_damaging(0.517) TCGA-BR-8683-01 19 58420784 58420784 G A ZNF417 Nonsense_Mutation p.R288* 0.14 TCGA-BR-8683-01 19 8531211 8531211 A C HNRNPM Silent p.G241G 0.16 TCGA-BR-8683-01 1 113269276 113269276 C T FAM19A3 Missense_Mutation p.R162W 0.38 deleterious_low_confidence(0.04) benign(0) TCGA-BR-8683-01 1 115123954 115123954 C G BCAS2 Missense_Mutation p.S51T 0.16 tolerated(0.13) benign(0.272) TCGA-BR-8683-01 1 115615613 115615613 C T TSPAN2 Missense_Mutation p.V29I 0.45 tolerated(0.49) probably_damaging(0.997) TCGA-BR-8683-01 1 152278792 152278792 C T FLG Missense_Mutation p.R2857H 0.07 benign(0) TCGA-BR-8683-01 1 155850376 155850376 G T SYT11 Missense_Mutation p.R316I 0.11 deleterious(0) benign(0.279) TCGA-BR-8683-01 1 155896493 155896493 T C KIAA0907 Missense_Mutation p.S219G 0.12 tolerated(0.77) benign(0.001) TCGA-BR-8683-01 1 161091934 161091934 A G DEDD 3'UTR 0.09 TCGA-BR-8683-01 1 165389170 165389170 G C RXRG Missense_Mutation p.P127A 0.23 deleterious(0.04) benign(0.009) TCGA-BR-8683-01 1 165397991 165397991 G T RXRG Missense_Mutation p.P88T 0.36 tolerated(0.06) probably_damaging(0.995) TCGA-BR-8683-01 1 182873396 182873396 T A SHCBP1L Silent p.I502I 0.11 TCGA-BR-8683-01 1 196227467 196227467 C G KCNT2 Missense_Mutation p.R1023T 0.15 deleterious(0.04) probably_damaging(0.989) TCGA-BR-8683-01 1 196744033 196744033 A G CFHR3 Missense_Mutation p.N6S 0.14 tolerated(0.21) benign(0.026) TCGA-BR-8683-01 1 197019844 197019844 G A F13B Missense_Mutation p.T574I 0.17 deleterious(0.01) possibly_damaging(0.71) TCGA-BR-8683-01 1 200571084 200571084 C T KIF14 Missense_Mutation p.A698T 0.12 deleterious(0) probably_damaging(1) TCGA-BR-8683-01 1 201291173 201291173 G A PKP1 Missense_Mutation p.R493H 0.10 tolerated(0.11) possibly_damaging(0.891) TCGA-BR-8683-01 1 201938729 201938729 A T TIMM17A 3'UTR 0.16 TCGA-BR-8683-01 1 202464542 202464542 C T PPP1R12B Missense_Mutation p.S756L 0.17 tolerated(0.27) benign(0.001) TCGA-BR-8683-01 1 204587896 204587896 G A LRRN2 Missense_Mutation p.R409C 0.13 deleterious(0) probably_damaging(0.98) TCGA-BR-8683-01 1 236306163 236306163 T A GPR137B Missense_Mutation p.F81I 0.14 deleterious(0) probably_damaging(1) TCGA-BR-8683-01 1 237838114 237838114 T A RYR2 Missense_Mutation p.V2933E 0.26 possibly_damaging(0.893) TCGA-BR-8683-01 1 52280263 52280263 G A NRD1 Nonsense_Mutation p.Q595* 0.19 TCGA-BR-8683-01 20 33148650 33148650 C T PIGU 3'UTR 0.10 TCGA-BR-8683-01 20 42213598 42213598 C T SGK2 Missense_Mutation p.S409L 0.11 tolerated(0.07) benign(0.403) TCGA-BR-8683-01 20 5903632 5903632 C A CHGB Missense_Mutation p.P281H 0.17 deleterious(0) probably_damaging(0.999) TCGA-BR-8683-01 20 5905657 5905657 C G CHGB Missense_Mutation p.L666V 0.20 deleterious(0) probably_damaging(0.999) TCGA-BR-8683-01 20 61956812 61956812 G A COL20A1 Missense_Mutation p.G1105E 0.09 deleterious(0.02) probably_damaging(1) TCGA-BR-8683-01 21 34927514 34927514 C T SON Missense_Mutation p.R1993C 0.26 unknown(0) TCGA-BR-8683-01 21 43829575 43829575 C A UBASH3A Missense_Mutation p.P71H 0.17 deleterious(0) probably_damaging(1) TCGA-BR-8683-01 21 44841177 44841177 G A SIK1 Silent p.A190A 0.38 TCGA-BR-8683-01 21 45096660 45096660 G C RRP1B Missense_Mutation p.V221L 0.10 deleterious(0.04) benign(0.359) TCGA-BR-8683-01 22 19969506 19969506 C T ARVCF Missense_Mutation p.V107M 0.19 deleterious(0) possibly_damaging(0.611) TCGA-BR-8683-01 22 24125616 24125616 G A MMP11 Missense_Mutation p.R451H 0.15 deleterious(0.05) benign(0.168) TCGA-BR-8683-01 22 29708172 29708172 G T GAS2L1 3'Flank 0.17 TCGA-BR-8683-01 2 112991747 112991747 G A ZC3H8 Missense_Mutation p.R191C 0.09 deleterious(0.01) possibly_damaging(0.704) TCGA-BR-8683-01 2 113322007 113322007 C T POLR1B Silent p.D559D 0.16 TCGA-BR-8683-01 2 141819691 141819691 G T LRP1B Missense_Mutation p.L389I 0.18 benign(0.444) TCGA-BR-8683-01 2 145161588 145161588 G A ZEB2 Silent p.H234H 0.13 TCGA-BR-8683-01 2 153515661 153515661 T - PRPF40A Frame_Shift_Del p.R818Dfs*93 0.09 TCGA-BR-8683-01 2 163393500 163393500 G A KCNH7 Missense_Mutation p.T133M 0.31 tolerated(0.3) benign(0.108) TCGA-BR-8683-01 2 179402500 179402500 C A TTN Missense_Mutation p.R33145L 0.10 TCGA-BR-8683-01 2 179452842 179452842 C G TTN Missense_Mutation p.G21098R 0.26 TCGA-BR-8683-01 2 179483457 179483457 G T TTN Missense_Mutation p.P15607H 0.08 TCGA-BR-8683-01 2 188225342 188225342 T A CALCRL Missense_Mutation p.Y255F 0.08 deleterious(0.01) probably_damaging(0.912) TCGA-BR-8683-01 2 210642188 210642188 G A UNC80 Missense_Mutation p.E169K 0.34 benign(0.036) TCGA-BR-8683-01 2 219875581 219875581 G T CCDC108 Silent p.G1365G 0.39 TCGA-BR-8683-01 2 223086025 223086025 C T PAX3 Missense_Mutation p.G292R 0.30 deleterious(0) probably_damaging(0.933) TCGA-BR-8683-01 2 24240392 24240392 C T MFSD2B Silent p.G205G 0.23 TCGA-BR-8683-01 2 31754396 31754396 G A AL133247.2 Intron 0.16 TCGA-BR-8683-01 2 43922307 43922307 G A PLEKHH2 Missense_Mutation p.R149H 0.12 tolerated(0.05) probably_damaging(0.985) TCGA-BR-8683-01 2 46121 46121 C G FAM110C Missense_Mutation p.A89P 0.14 tolerated(0.08) possibly_damaging(0.69) TCGA-BR-8683-01 2 61493232 61493232 C A USP34 Missense_Mutation p.C1835F 0.19 deleterious(0) benign(0.049) TCGA-BR-8683-01 2 63085542 63085542 A T EHBP1 Missense_Mutation p.E212D 0.15 tolerated(0.12) probably_damaging(0.955) TCGA-BR-8683-01 2 73446046 73446046 C T SMYD5 Missense_Mutation p.R52W 0.07 deleterious(0) probably_damaging(0.94) TCGA-BR-8683-01 3 119300920 119300920 T A ADPRH Intron 0.19 TCGA-BR-8683-01 3 119300999 119300999 A C ADPRH 5'UTR 0.09 TCGA-BR-8683-01 3 131181615 131181615 A G MRPL3 Silent p.Y333Y 0.06 TCGA-BR-8683-01 3 132244599 132244599 C T DNAJC13 Missense_Mutation p.A2069V 0.13 tolerated(0.06) benign(0.041) TCGA-BR-8683-01 3 14200141 14200141 C T XPC Silent p.Q414Q 0.18 TCGA-BR-8683-01 3 148545851 148545851 C A CPB1 Missense_Mutation p.A45D 0.16 deleterious(0.03) possibly_damaging(0.724) TCGA-BR-8683-01 3 151155396 151155396 T C IGSF10 Missense_Mutation p.E2318G 0.10 tolerated(0.06) possibly_damaging(0.869) TCGA-BR-8683-01 3 164783102 164783102 C A SI Missense_Mutation p.D252Y 0.12 deleterious(0) possibly_damaging(0.81) TCGA-BR-8683-01 3 172165569 172165569 A G GHSR Missense_Mutation p.V212A 0.14 tolerated(0.55) benign(0.007) TCGA-BR-8683-01 3 183963008 183963008 C A ALG3 Missense_Mutation p.G195C 0.11 tolerated(0.16) possibly_damaging(0.676) TCGA-BR-8683-01 3 42827591 42827591 G T HIGD1A Missense_Mutation p.T68N 0.16 deleterious(0.02) benign(0.331) TCGA-BR-8683-01 3 63645450 63645450 G A SNTN Silent p.L65L 0.37 TCGA-BR-8683-01 3 87027812 87027812 G T VGLL3 Silent p.V89V 0.18 TCGA-BR-8683-01 4 120442088 120442088 A C PDE5A Splice_Site p.X635_splice 0.14 TCGA-BR-8683-01 4 123260416 123260416 A T KIAA1109 Nonsense_Mutation p.K4069* 0.20 TCGA-BR-8683-01 4 125590991 125590991 C G ANKRD50 Missense_Mutation p.Q1147H 0.16 tolerated(0.13) benign(0) TCGA-BR-8683-01 4 138452108 138452108 C A PCDH18 Missense_Mutation p.V379F 0.23 deleterious(0) probably_damaging(0.978) TCGA-BR-8683-01 4 53752026 53752026 C T SCFD2 Missense_Mutation p.R617Q 0.09 deleterious(0.02) possibly_damaging(0.867) TCGA-BR-8683-01 4 55589833 55589833 G C KIT Missense_Mutation p.D439H 0.29 deleterious(0.03) possibly_damaging(0.697) TCGA-BR-8683-01 5 137521738 137521738 G A KIF20A Silent p.Q738Q 0.11 TCGA-BR-8683-01 5 139060694 139060694 G A CXXC5 Missense_Mutation p.V196M 0.36 tolerated(0.21) possibly_damaging(0.862) TCGA-BR-8683-01 5 140230060 140230060 G A PCDHA9 Silent p.T660T 0.18 TCGA-BR-8683-01 5 140431602 140431602 C T PCDHB1 Missense_Mutation p.R183C 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8683-01 5 140481581 140481581 G A PCDHB3 Missense_Mutation p.A450T 0.29 tolerated_low_confidence(0.38) benign(0.001) TCGA-BR-8683-01 5 140515027 140515027 C T PCDHB5 Missense_Mutation p.A4V 0.11 tolerated_low_confidence(0.15) benign(0.012) TCGA-BR-8683-01 5 140720421 140720421 C T PCDHGA2 Missense_Mutation p.T628M 0.33 deleterious_low_confidence(0) probably_damaging(0.957) TCGA-BR-8683-01 5 140798932 140798932 G A PCDHGB7 Silent p.S502S 0.24 TCGA-BR-8683-01 5 148754069 148754069 G A IL17B Missense_Mutation p.R136C 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-BR-8683-01 5 153175110 153175110 A G GRIA1 Intron 0.10 TCGA-BR-8683-01 5 16477850 16477850 G C FAM134B Missense_Mutation p.D307E 0.25 tolerated(1) benign(0.341) TCGA-BR-8683-01 5 176520430 176520430 C T FGFR4 Silent p.S425S 0.04 TCGA-BR-8683-01 5 34008134 34008134 C T AMACR 5'Flank 0.21 TCGA-BR-8683-01 5 45262712 45262712 T C HCN1 Missense_Mutation p.T662A 0.22 tolerated_low_confidence(0.56) benign(0.001) TCGA-BR-8683-01 5 6752990 6752990 G A PAPD7 Missense_Mutation p.R425K 0.14 tolerated_low_confidence(0.13) benign(0.08) TCGA-BR-8683-01 5 94756050 94756050 C T FAM81B Silent p.H200H 0.17 TCGA-BR-8683-01 6 121655563 121655563 G T TBC1D32 Missense_Mutation p.S5Y 0.12 deleterious(0) probably_damaging(0.926) TCGA-BR-8683-01 6 128326280 128326280 C A PTPRK Nonsense_Mutation p.E815* 0.10 TCGA-BR-8683-01 6 15496755 15496755 G T JARID2 Silent p.L433L 0.05 TCGA-BR-8683-01 6 16326835 16326835 C T ATXN1 Silent p.T569T 0.05 TCGA-BR-8683-01 6 170105704 170105704 A G PHF10 Intron 0.29 TCGA-BR-8683-01 6 28270052 28270052 G A PGBD1 Silent p.L807L 0.16 TCGA-BR-8683-01 6 29694772 29694772 C T HLA-F Silent p.G383G 0.11 TCGA-BR-8683-01 6 31996494 31996494 C A C4B Silent p.V1085V 0.09 TCGA-BR-8683-01 6 33373066 33373066 C T KIFC1 Silent p.A398A 0.14 TCGA-BR-8683-01 6 38561911 38561911 C T BTBD9 Silent p.E126E 0.12 TCGA-BR-8683-01 6 39398879 39398879 G T KIF6 Missense_Mutation p.D568E 0.12 deleterious(0.01) possibly_damaging(0.715) TCGA-BR-8683-01 6 41771588 41771588 G T USP49 Missense_Mutation p.T506K 0.62 tolerated(0.05) probably_damaging(0.962) TCGA-BR-8683-01 6 45405709 45405709 C T RUNX2 Silent p.T202T 0.08 TCGA-BR-8683-01 7 104715217 104715218 - A KMT2E Frame_Shift_Ins p.S231Kfs*12 0.14 TCGA-BR-8683-01 7 107790220 107790220 T C NRCAM 3'UTR 0.21 TCGA-BR-8683-01 7 137565290 137565290 C T CREB3L2 Missense_Mutation p.A499T 0.16 tolerated_low_confidence(0.38) benign(0) TCGA-BR-8683-01 7 21630827 21630827 G T DNAH11 Missense_Mutation p.V767L 0.20 possibly_damaging(0.615) TCGA-BR-8683-01 7 42065827 42065827 C T GLI3 Missense_Mutation p.V405I 0.16 tolerated(0.39) probably_damaging(0.992) TCGA-BR-8683-01 7 7283247 7283247 T G C1GALT1 Silent p.R327R 0.21 TCGA-BR-8683-01 7 86542517 86542517 T A KIAA1324L Nonsense_Mutation p.R579* 0.08 TCGA-BR-8683-01 7 99711237 99711237 A G TAF6 Splice_Site p.X170_splice 0.36 TCGA-BR-8683-01 8 103297906 103297906 G A UBR5 Silent p.N1773N 0.11 TCGA-BR-8683-01 8 103324612 103324614 AGA - UBR5 In_Frame_Del p.S703del 0.33 TCGA-BR-8683-01 8 119941043 119941043 T A TNFRSF11B Nonsense_Mutation p.K176* 0.11 TCGA-BR-8683-01 8 145749636 145749638 TTC - LRRC24 In_Frame_Del p.E155del 0.20 TCGA-BR-8683-01 8 17447112 17447112 C T PDGFRL Missense_Mutation p.T64M 0.04 tolerated(0.05) benign(0.109) TCGA-BR-8683-01 8 24771915 24771915 C T NEFM Silent p.I203I 0.17 TCGA-BR-8683-01 8 27320871 27320871 G A CHRNA2 Silent p.P363P 0.31 TCGA-BR-8683-01 8 43197365 43197365 T C POTEA RNA 0.12 TCGA-BR-8683-01 8 75927084 75927084 C T CRISPLD1 Missense_Mutation p.R222W 0.39 deleterious(0) benign(0.339) TCGA-BR-8683-01 8 99441398 99441398 A G KCNS2 Silent p.A397A 0.13 TCGA-BR-8683-01 9 125424489 125424489 G T OR1L1 Missense_Mutation p.Q165H 0.09 tolerated(0.17) benign(0.02) TCGA-BR-8683-01 9 88207528 88207528 C A AGTPBP1 Missense_Mutation p.D799Y 0.11 deleterious(0) probably_damaging(0.964) TCGA-BR-8683-01 9 95477513 95477514 - ACAG BICD2 Frame_Shift_Ins p.A831Lfs*26 0.12 TCGA-BR-8683-01 9 98232138 98232138 G A PTCH1 Nonsense_Mutation p.R602* 0.24 TCGA-BR-8683-01 X 120009290 120009290 C T CT47B1 Missense_Mutation p.G79R 0.48 tolerated(0.53) benign(0.333) TCGA-BR-8683-01 X 78216284 78216284 C T P2RY10 Silent p.L89L 0.26 TCGA-BR-8686-01 10 135013926 135013926 G A KNDC1 Missense_Mutation p.R984H 0.27 tolerated(0.19) benign(0.411) TCGA-BR-8686-01 10 37490214 37490214 C A ANKRD30A Missense_Mutation p.H888N 0.11 tolerated(0.59) benign(0.013) TCGA-BR-8686-01 10 38344006 38344006 C G ZNF33A Missense_Mutation p.H318Q 0.19 tolerated(0.65) benign(0) TCGA-BR-8686-01 10 38344156 38344156 T G ZNF33A Missense_Mutation p.D368E 0.14 tolerated(0.67) benign(0) TCGA-BR-8686-01 10 38344180 38344180 A G ZNF33A Silent p.Q376Q 0.12 TCGA-BR-8686-01 10 55698629 55698629 C A PCDH15 Missense_Mutation p.V1107F 0.16 deleterious(0) probably_damaging(0.989) TCGA-BR-8686-01 10 5693205 5693205 G A ASB13 Missense_Mutation p.A118V 0.14 tolerated(0.38) possibly_damaging(0.754) TCGA-BR-8686-01 10 5956183 5956183 G A FBXO18 Silent p.L500L 0.15 TCGA-BR-8686-01 11 103907697 103907697 C T PDGFD Intron 0.36 TCGA-BR-8686-01 11 129758493 129758493 G T NFRKB Missense_Mutation p.F124L 0.13 tolerated(0.59) unknown(0) TCGA-BR-8686-01 11 18754846 18754846 C T PTPN5 Missense_Mutation p.R385H 0.10 tolerated(0.05) benign(0.058) TCGA-BR-8686-01 11 46774874 46774874 C G CKAP5 Missense_Mutation p.Q1681H 0.24 tolerated(0.65) benign(0.058) TCGA-BR-8686-01 11 5364235 5364235 G T OR51B5 Missense_Mutation p.H174N 0.16 deleterious(0) probably_damaging(0.984) TCGA-BR-8686-01 11 55111534 55111534 G A OR4A16 Silent p.S286S 0.25 TCGA-BR-8686-01 11 55371590 55371590 T C OR4C11 Missense_Mutation p.K87R 0.18 tolerated(0.2) benign(0.033) TCGA-BR-8686-01 11 56185309 56185309 T G OR5R1 Missense_Mutation p.T134P 0.15 deleterious(0) benign(0.424) TCGA-BR-8686-01 11 56510658 56510658 G A OR9G4 Silent p.Y210Y 0.45 TCGA-BR-8686-01 11 82935914 82935914 G T ANKRD42 Nonsense_Mutation p.E174* 0.14 TCGA-BR-8686-01 11 94134339 94134339 G A GPR83 Silent p.D25D 0.17 TCGA-BR-8686-01 11 9801995 9801995 G T SBF2 Missense_Mutation p.D1840E 0.11 tolerated(0.38) possibly_damaging(0.679) TCGA-BR-8686-01 12 101336287 101336287 G T ANO4 Missense_Mutation p.A109S 0.08 tolerated(0.3) possibly_damaging(0.492) TCGA-BR-8686-01 12 11034864 11034864 T C PRH1 Silent p.Q157Q 0.12 TCGA-BR-8686-01 12 120150501 120150501 C T CIT Splice_Site p.X1527_splice 0.23 TCGA-BR-8686-01 12 129822189 129822189 G A TMEM132D Missense_Mutation p.P430L 0.06 deleterious(0) probably_damaging(0.993) TCGA-BR-8686-01 12 72366481 72366481 C T TPH2 Missense_Mutation p.S264F 0.06 deleterious(0) possibly_damaging(0.877) TCGA-BR-8686-01 14 36096891 36096891 C G RALGAPA1 Missense_Mutation p.G1582R 0.41 deleterious(0.02) probably_damaging(1) TCGA-BR-8686-01 14 50065787 50065787 T G LRR1 Missense_Mutation p.L17V 0.29 tolerated(0.52) benign(0.016) TCGA-BR-8686-01 14 73425480 73425480 C T DCAF4 Silent p.V485V 0.16 TCGA-BR-8686-01 14 75573236 75573236 C T NEK9 Silent p.K499K 0.05 TCGA-BR-8686-01 14 94088869 94088869 C T UNC79 Missense_Mutation p.H1587Y 0.06 tolerated_low_confidence(0.41) benign(0.039) TCGA-BR-8686-01 15 30011254 30011254 G T TJP1 Missense_Mutation p.P1031Q 0.28 tolerated_low_confidence(0.44) benign(0.002) TCGA-BR-8686-01 15 37242522 37242522 C T MEIS2 Intron 0.21 TCGA-BR-8686-01 15 45433197 45433197 C T DUOX1 Silent p.S498S 0.08 TCGA-BR-8686-01 16 51173642 51173642 C T SALL1 Missense_Mutation p.D831N 0.10 tolerated(0.1) benign(0.01) TCGA-BR-8686-01 16 57503205 57503205 G A POLR2C Silent p.P129P 0.24 TCGA-BR-8686-01 16 66919712 66919712 G A PDP2 Missense_Mutation p.D509N 0.10 deleterious(0) probably_damaging(1) TCGA-BR-8686-01 16 68862157 68862157 C T CDH1 Missense_Mutation p.R749W 0.17 deleterious(0) probably_damaging(1) TCGA-BR-8686-01 17 10300223 10300223 G A MYH8 Missense_Mutation p.T1420M 0.22 deleterious(0.02) probably_damaging(0.964) TCGA-BR-8686-01 17 10427134 10427134 T C MYH2 Missense_Mutation p.E1748G 0.19 deleterious(0.02) possibly_damaging(0.835) TCGA-BR-8686-01 17 12656558 12656558 G T MYOCD Missense_Mutation p.L651F 0.15 deleterious(0) probably_damaging(0.977) TCGA-BR-8686-01 17 19235245 19235245 C T EPN2 Silent p.V497V 0.10 TCGA-BR-8686-01 17 35545362 35545362 C T ACACA Missense_Mutation p.R1544H 0.13 tolerated(0.08) probably_damaging(0.998) TCGA-BR-8686-01 17 5085395 5085395 C T ZNF594 Nonsense_Mutation p.W719* 0.10 TCGA-BR-8686-01 17 70943979 70943979 C T SLC39A11 Silent p.L114L 0.12 TCGA-BR-8686-01 17 72916569 72916569 G A USH1G Missense_Mutation p.A121V 0.11 deleterious(0) possibly_damaging(0.863) TCGA-BR-8686-01 17 77709072 77709072 G A ENPP7 Silent p.P210P 0.13 TCGA-BR-8686-01 19 36351817 36351817 C T KIRREL2 Missense_Mutation p.P312L 0.12 deleterious(0) probably_damaging(0.99) TCGA-BR-8686-01 19 37619007 37619007 T C ZNF420 Missense_Mutation p.F372L 0.12 deleterious(0) benign(0.288) TCGA-BR-8686-01 19 39734787 39734787 C T IFNL3 Missense_Mutation p.R90H 0.11 deleterious(0.03) possibly_damaging(0.812) TCGA-BR-8686-01 19 40589025 40589025 G T ZNF780A Silent p.I43I 0.08 TCGA-BR-8686-01 19 42396407 42396407 C T ARHGEF1 Silent p.L125L 0.09 TCGA-BR-8686-01 19 46973369 46973369 C T PNMAL1 Silent p.A308A 0.09 TCGA-BR-8686-01 19 49954783 49954783 T C PIH1D1 Missense_Mutation p.I17V 0.13 tolerated_low_confidence(0.27) benign(0) TCGA-BR-8686-01 19 50358107 50358107 C T PTOV1 Nonsense_Mutation p.Q138* 0.08 TCGA-BR-8686-01 19 55325193 55325193 G T KIR2DL4 Missense_Mutation p.R252M 0.08 deleterious(0.04) benign(0.116) TCGA-BR-8686-01 19 58049391 58049391 C T ZNF549 Missense_Mutation p.S340L 0.16 tolerated(0.08) benign(0.083) TCGA-BR-8686-01 19 7911558 7911558 C A EVI5L Missense_Mutation p.Q44K 0.21 tolerated(0.15) probably_damaging(0.953) TCGA-BR-8686-01 19 8555622 8555622 C T PRAM1 Missense_Mutation p.V588I 0.14 tolerated(1) benign(0.035) TCGA-BR-8686-01 1 110716597 110716597 C A SLC6A17 Silent p.V149V 0.08 TCGA-BR-8686-01 1 110925481 110925481 G A SLC16A4 Silent p.I65I 0.17 TCGA-BR-8686-01 1 114484035 114484035 G A HIPK1 Missense_Mutation p.V344I 0.16 deleterious(0.05) benign(0.262) TCGA-BR-8686-01 1 119927488 119927488 C T HAO2 Nonsense_Mutation p.R125* 0.15 TCGA-BR-8686-01 1 152081617 152081617 T C TCHH Missense_Mutation p.D1359G 0.04 unknown(0) TCGA-BR-8686-01 1 158516944 158516944 G T OR6Y1 Missense_Mutation p.Q318K 0.15 tolerated(0.44) benign(0.001) TCGA-BR-8686-01 1 161044471 161044471 G A PVRL4 Silent p.S310S 0.12 TCGA-BR-8686-01 1 179815828 179815828 T A TOR1AIP2 Missense_Mutation p.D264V 0.11 deleterious(0.02) possibly_damaging(0.883) TCGA-BR-8686-01 1 210857160 210857160 G A KCNH1 Silent p.H811H 0.08 TCGA-BR-8686-01 1 214170542 214170542 C T PROX1 Nonsense_Mutation p.Q222* 0.12 TCGA-BR-8686-01 1 22852924 22852924 G T ZBTB40 3'UTR 0.12 TCGA-BR-8686-01 1 231335945 231335945 G A TRIM67 Missense_Mutation p.G439R 0.06 deleterious(0) possibly_damaging(0.794) TCGA-BR-8686-01 1 247695143 247695143 C T OR2C3 Missense_Mutation p.R224Q 0.07 tolerated(0.6) benign(0.003) TCGA-BR-8686-01 1 248112179 248112179 C A OR2L8 Missense_Mutation p.T7K 0.08 deleterious(0) benign(0.072) TCGA-BR-8686-01 1 248308649 248308649 T C OR2M5 Missense_Mutation p.F67S 0.06 tolerated(1) benign(0) TCGA-BR-8686-01 1 24981344 24981346 AGA - SRRM1 Splice_Site p.X349_splice 0.20 TCGA-BR-8686-01 1 27089494 27089494 C - ARID1A Frame_Shift_Del p.L818Cfs*15 0.26 TCGA-BR-8686-01 1 28905175 28905175 C T TRNAU1AP 3'Flank 0.27 TCGA-BR-8686-01 1 43817973 43817973 C T MPL Missense_Mutation p.P551L 0.14 tolerated(0.08) benign(0.007) TCGA-BR-8686-01 1 55119744 55119744 G C MROH7 Missense_Mutation p.S382T 0.15 deleterious_low_confidence(0.04) benign(0.234) TCGA-BR-8686-01 1 65855119 65855119 G A DNAJC6 Silent p.T458T 0.12 TCGA-BR-8686-01 1 87188235 87188235 T G SH3GLB1 Missense_Mutation p.I119S 0.23 deleterious(0) benign(0.287) TCGA-BR-8686-01 1 94568687 94568687 G A ABCA4 Nonsense_Mutation p.R152* 0.07 TCGA-BR-8686-01 20 2843363 2843363 C G VPS16 Intron 0.10 TCGA-BR-8686-01 20 33329879 33329879 C T NCOA6 Missense_Mutation p.S1394N 0.22 benign(0) TCGA-BR-8686-01 20 35521242 35521242 C T SAMHD1 3'UTR 0.14 TCGA-BR-8686-01 20 741724 741724 G A SLC52A3 Silent p.N452N 0.25 TCGA-BR-8686-01 21 31062113 31062113 G T GRIK1 Missense_Mutation p.A160E 0.09 deleterious(0) probably_damaging(1) TCGA-BR-8686-01 21 31852625 31852625 G A KRTAP19-1 Silent p.Y4Y 0.18 TCGA-BR-8686-01 22 22057675 22057675 G A YPEL1 Missense_Mutation p.T85M 0.18 tolerated(0.07) benign(0.104) TCGA-BR-8686-01 22 41572973 41572973 G T EP300 Missense_Mutation p.C1753F 0.09 probably_damaging(0.999) TCGA-BR-8686-01 22 47091193 47091193 G A CERK Silent p.S321S 0.11 TCGA-BR-8686-01 22 50967595 50967595 G A TYMP Silent p.L129L 0.13 TCGA-BR-8686-01 2 101606898 101606898 C T NPAS2 Missense_Mutation p.R670W 0.10 deleterious(0) possibly_damaging(0.724) TCGA-BR-8686-01 2 155099285 155099285 C T GALNT13 Missense_Mutation p.R185C 0.20 deleterious(0) probably_damaging(0.998) TCGA-BR-8686-01 2 179585229 179585229 G T TTN Missense_Mutation p.H7754N 0.17 TCGA-BR-8686-01 2 209190439 209190439 T A PIKFYVE Silent p.P968P 0.11 TCGA-BR-8686-01 2 234526744 234526744 C T UGT1A8 Nonsense_Mutation p.R131* 0.06 TCGA-BR-8686-01 2 74719180 74719180 C A TTC31 Missense_Mutation p.A309E 0.17 deleterious(0.01) probably_damaging(1) TCGA-BR-8686-01 2 85981537 85981537 G A ATOH8 Silent p.P75P 0.27 TCGA-BR-8686-01 2 89399525 89399525 G T IGKV1-16 Missense_Mutation p.Q60K 0.07 tolerated(0.05) benign(0.308) TCGA-BR-8686-01 2 99861777 99861777 G T LYG2 Missense_Mutation p.S110Y 0.10 tolerated(0.06) benign(0.438) TCGA-BR-8686-01 3 128598625 128598625 C T ACAD9 Missense_Mutation p.R31C 0.27 deleterious(0.03) benign(0.006) TCGA-BR-8686-01 3 136035904 136035904 C T PCCB Missense_Mutation p.S383L 0.08 deleterious_low_confidence(0) possibly_damaging(0.685) TCGA-BR-8686-01 3 13860757 13860757 C T WNT7A Missense_Mutation p.R245H 0.08 tolerated(0.06) probably_damaging(0.954) TCGA-BR-8686-01 3 142275392 142275392 C T ATR Silent p.V637V 0.28 TCGA-BR-8686-01 3 178916876 178916876 G A PIK3CA Missense_Mutation p.R88Q 0.37 tolerated(0.06) probably_damaging(0.998) TCGA-BR-8686-01 3 19295169 19295169 G T KCNH8 Missense_Mutation p.A34S 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8686-01 4 126411905 126411905 G A FAT4 Missense_Mutation p.R4643H 0.11 probably_damaging(0.994) TCGA-BR-8686-01 4 147561227 147561227 C T POU4F2 Missense_Mutation p.A166V 0.21 tolerated_low_confidence(0.37) benign(0.236) TCGA-BR-8686-01 4 30724035 30724035 C T PCDH7 Missense_Mutation p.R331C 0.10 deleterious(0) possibly_damaging(0.849) TCGA-BR-8686-01 5 11111072 11111072 C T CTNND2 Silent p.T787T 0.10 TCGA-BR-8686-01 5 118470009 118470009 A G DMXL1 Silent p.G767G 0.10 TCGA-BR-8686-01 5 180661295 180661295 C T TRIM41 Silent p.A471A 0.10 TCGA-BR-8686-01 6 143074616 143074616 C T HIVEP2 Silent p.E2323E 0.16 TCGA-BR-8686-01 6 151130381 151130381 G A PLEKHG1 Silent p.T351T 0.13 TCGA-BR-8686-01 6 26393278 26393278 C T BTN2A2 3'UTR 0.19 TCGA-BR-8686-01 6 29976041 29976041 T C ZNRD1-AS1 Intron 0.06 TCGA-BR-8686-01 6 32163554 32163554 C G NOTCH4 Missense_Mutation p.G1891A 0.30 tolerated_low_confidence(0.06) benign(0.029) TCGA-BR-8686-01 6 35477060 35477060 C T TULP1 Missense_Mutation p.E250K 0.05 tolerated(0.5) benign(0.01) TCGA-BR-8686-01 6 39507959 39507959 C A KIF6 Missense_Mutation p.A489S 0.15 deleterious(0.04) benign(0.017) TCGA-BR-8686-01 6 97246870 97246870 A G GPR63 Silent p.I246I 0.06 TCGA-BR-8686-01 7 100159886 100159886 C A AGFG2 Missense_Mutation p.S294R 0.20 tolerated(0.15) benign(0.181) TCGA-BR-8686-01 7 107399357 107399357 C T CBLL1 Missense_Mutation p.P404S 0.06 tolerated(0.19) probably_damaging(0.998) TCGA-BR-8686-01 7 110763825 110763825 C A LRRN3 Missense_Mutation p.L333I 0.09 deleterious(0.04) probably_damaging(0.999) TCGA-BR-8686-01 7 113519400 113519400 G A PPP1R3A Missense_Mutation p.H583Y 0.13 tolerated(0.09) possibly_damaging(0.543) TCGA-BR-8686-01 7 114299684 114299684 A C FOXP2 Missense_Mutation p.T560P 0.09 deleterious(0) probably_damaging(0.961) TCGA-BR-8686-01 7 143826573 143826573 C T OR2A14 Missense_Mutation p.A123V 0.09 tolerated(1) benign(0) TCGA-BR-8686-01 7 144015510 144015510 C T OR2A1 Missense_Mutation p.T98M 0.08 tolerated(0.75) benign(0.002) TCGA-BR-8686-01 7 38433753 38433754 - C AMPH Frame_Shift_Ins p.A487Gfs*29 0.10 TCGA-BR-8686-01 7 92027051 92027051 G A ANKIB1 Missense_Mutation p.G804S 0.08 tolerated_low_confidence(0.09) benign(0.054) TCGA-BR-8686-01 7 93555472 93555472 G T GNG11 Nonsense_Mutation p.G56* 0.31 TCGA-BR-8686-01 8 139164616 139164616 C T FAM135B Missense_Mutation p.R701Q 0.14 deleterious(0.02) probably_damaging(0.984) TCGA-BR-8686-01 8 143425589 143425589 G A TSNARE1 Silent p.Y161Y 0.11 TCGA-BR-8686-01 9 122011382 122011382 C T BRINP1 Missense_Mutation p.D89N 0.10 tolerated_low_confidence(0.09) benign(0.188) TCGA-BR-8686-01 9 139909541 139909541 G T ABCA2 Missense_Mutation p.L1236M 0.13 tolerated(0.28) benign(0.06) TCGA-BR-8686-01 X 103267818 103267818 G A H2BFWT Missense_Mutation p.R139W 0.32 deleterious(0) possibly_damaging(0.877) TCGA-BR-8686-01 X 105011214 105011214 A T IL1RAPL2 Missense_Mutation p.S541C 0.32 tolerated(0.11) benign(0.346) TCGA-BR-8686-01 X 107829938 107829938 C A COL4A5 Missense_Mutation p.P376T 0.18 unknown(0) TCGA-BR-8686-01 X 125298874 125298874 C A DCAF12L2 Missense_Mutation p.C345F 0.12 tolerated(0.16) possibly_damaging(0.578) TCGA-BR-8686-01 X 140984423 140984423 C T MAGEC3 Intron 0.23 TCGA-BR-8686-01 X 151900231 151900231 C A MAGEA12 Silent p.L190L 0.17 TCGA-BR-8686-01 X 15381403 15381403 C A FIGF Missense_Mutation p.Q43H 0.10 deleterious(0) possibly_damaging(0.88) TCGA-BR-8687-01 10 126715032 126715032 A G CTBP2 Missense_Mutation p.F433L 0.29 tolerated_low_confidence(0.51) benign(0) TCGA-BR-8687-01 10 135099058 135099058 C T TUBGCP2 Silent p.A627A 0.25 TCGA-BR-8687-01 10 24784102 24784102 A G KIAA1217 Missense_Mutation p.N604S 0.39 tolerated(1) benign(0.026) TCGA-BR-8687-01 10 26482150 26482150 G T MYO3A Missense_Mutation p.E1485D 0.25 tolerated_low_confidence(0.22) benign(0.187) TCGA-BR-8687-01 10 33468943 33468943 C T NRP1 3'UTR 0.07 TCGA-BR-8687-01 10 55912869 55912869 G T PCDH15 Missense_Mutation p.A592E 0.16 tolerated(0.1) benign(0.081) TCGA-BR-8687-01 10 5784428 5784428 C T FAM208B Missense_Mutation p.A899V 0.07 tolerated(0.18) benign(0.124) TCGA-BR-8687-01 10 64958329 64958329 T G JMJD1C Missense_Mutation p.K1812T 0.49 deleterious(0) probably_damaging(0.999) TCGA-BR-8687-01 10 8115913 8115913 C T GATA3 Missense_Mutation p.T421M 0.15 deleterious(0.01) probably_damaging(0.975) TCGA-BR-8687-01 10 96104172 96104172 T G NOC3L Missense_Mutation p.K524T 0.31 deleterious(0.01) probably_damaging(0.959) TCGA-BR-8687-01 10 97918065 97918065 C - ZNF518A RNA 0.20 TCGA-BR-8687-01 10 98744030 98744030 A G C10orf12 Silent p.E961E 0.51 TCGA-BR-8687-01 10 99003882 99003882 T G ARHGAP19 Missense_Mutation p.K343T 0.25 tolerated(0.5) benign(0.017) TCGA-BR-8687-01 11 102984412 102984412 A C DYNC2H1 Missense_Mutation p.Q114H 0.16 benign(0.112) TCGA-BR-8687-01 11 10590119 10590119 G A LYVE1 5'UTR 0.17 TCGA-BR-8687-01 11 10776559 10776559 G A CTR9 Missense_Mutation p.A67T 0.06 deleterious(0.01) benign(0.16) TCGA-BR-8687-01 11 123848218 123848218 T G OR10S1 Missense_Mutation p.T61P 0.19 deleterious(0) possibly_damaging(0.528) TCGA-BR-8687-01 11 130341245 130341245 G T ADAMTS15 Missense_Mutation p.C682F 0.38 deleterious(0) probably_damaging(0.999) TCGA-BR-8687-01 11 30557717 30557717 T C MPPED2 Missense_Mutation p.D45G 0.19 tolerated(0.16) benign(0.051) TCGA-BR-8687-01 11 36250770 36250770 A G LDLRAD3 Silent p.Q287Q 0.08 TCGA-BR-8687-01 11 36595301 36595301 T G RAG1 Silent p.T149T 0.26 TCGA-BR-8687-01 11 49831598 49831603 GTGCAG TTGCA RP11-707M1.1 RNA 0.18 TCGA-BR-8687-01 11 51412308 51412308 A C OR4A5 Missense_Mutation p.L30V 0.26 deleterious_low_confidence(0) possibly_damaging(0.839) TCGA-BR-8687-01 11 55419250 55419250 G T OR4S2 Nonsense_Mutation p.E291* 0.40 TCGA-BR-8687-01 11 55606243 55606243 A G OR5D16 Missense_Mutation p.R6G 0.46 tolerated(0.69) benign(0.005) TCGA-BR-8687-01 11 55905083 55905083 T A OR8J3 Missense_Mutation p.T38S 0.48 tolerated(0.49) probably_damaging(0.997) TCGA-BR-8687-01 11 58170447 58170447 A G OR5B3 Missense_Mutation p.S146P 0.21 tolerated_low_confidence(0.14) benign(0.25) TCGA-BR-8687-01 11 64037689 64037689 A G BAD Missense_Mutation p.S167P 0.18 deleterious_low_confidence(0.01) probably_damaging(0.949) TCGA-BR-8687-01 11 64112239 64112239 G A CCDC88B Silent p.E742E 0.11 TCGA-BR-8687-01 11 6912920 6912920 G C OR2D2 Missense_Mutation p.S271W 0.55 tolerated(0.08) benign(0.146) TCGA-BR-8687-01 11 93542936 93542936 G T MED17 Missense_Mutation p.W546C 0.38 deleterious(0) probably_damaging(0.98) TCGA-BR-8687-01 11 99944940 99944940 A C CNTN5 Missense_Mutation p.E498D 0.31 tolerated(0.63) benign(0.019) TCGA-BR-8687-01 12 12334066 12334066 T G LRP6 Missense_Mutation p.E428D 0.39 deleterious(0.01) probably_damaging(0.976) TCGA-BR-8687-01 12 25398285 25398285 C T KRAS Missense_Mutation p.G12S 0.32 deleterious(0.03) possibly_damaging(0.644) TCGA-BR-8687-01 12 33559774 33559774 C G SYT10 Missense_Mutation p.D343H 0.14 deleterious(0) probably_damaging(0.998) TCGA-BR-8687-01 12 4796211 4796211 C T NDUFA9 Silent p.R357R 0.19 TCGA-BR-8687-01 12 56364997 56364997 C T CDK2 Missense_Mutation p.P253L 0.07 deleterious(0.01) benign(0.109) TCGA-BR-8687-01 12 57578891 57578891 C T LRP1 Silent p.R2122R 0.05 TCGA-BR-8687-01 12 64814012 64814012 T G XPOT Missense_Mutation p.L218V 0.15 deleterious(0.02) possibly_damaging(0.615) TCGA-BR-8687-01 12 65857111 65857111 A G MSRB3 3'UTR 0.07 TCGA-BR-8687-01 12 69127260 69127260 A C NUP107 Missense_Mutation p.E710D 0.07 tolerated(0.45) benign(0.004) TCGA-BR-8687-01 12 81472095 81472095 T G ACSS3 Missense_Mutation p.F66V 0.19 deleterious(0) probably_damaging(0.978) TCGA-BR-8687-01 12 94972170 94972170 C T TMCC3 Silent p.Q377Q 0.06 TCGA-BR-8687-01 13 25155861 25155861 G A RP11-556N21.1 Splice_Site 0.17 TCGA-BR-8687-01 13 36125129 36125129 C T NBEA Missense_Mutation p.R2256W 0.14 deleterious(0) possibly_damaging(0.477) TCGA-BR-8687-01 13 36888425 36888425 G T SPG20 Silent p.T474T 0.22 TCGA-BR-8687-01 14 20529098 20529098 A C OR4L1 Silent p.R299R 0.06 TCGA-BR-8687-01 14 21991766 21991766 T C SALL2 Missense_Mutation p.K699R 0.41 deleterious(0) probably_damaging(0.998) TCGA-BR-8687-01 14 22337385 22337385 T G TRAV13-1 Missense_Mutation p.L59R 0.05 deleterious(0.01) benign(0.004) TCGA-BR-8687-01 14 31637631 31637631 C T HECTD1 Missense_Mutation p.D499N 0.13 tolerated(0.24) benign(0.263) TCGA-BR-8687-01 14 45432035 45432035 T C FAM179B Silent p.Y137Y 0.17 TCGA-BR-8687-01 14 61995851 61995851 T G RP11-47I22.4 Missense_Mutation p.F3V 0.10 deleterious(0) probably_damaging(0.994) TCGA-BR-8687-01 14 71209259 71209259 T G MAP3K9 Missense_Mutation p.K459T 0.09 deleterious(0) benign(0.406) TCGA-BR-8687-01 15 34648354 34648354 C T NUTM1 Silent p.A687A 0.35 TCGA-BR-8687-01 15 41066576 41066576 T C DNAJC17 Missense_Mutation p.E220G 0.20 deleterious(0) probably_damaging(0.996) TCGA-BR-8687-01 15 43308000 43308000 T G UBR1 Missense_Mutation p.K1032T 0.05 deleterious(0) probably_damaging(0.98) TCGA-BR-8687-01 15 48434341 48434341 A C SLC24A5 Missense_Mutation p.E432D 0.53 tolerated(0.38) benign(0.008) TCGA-BR-8687-01 15 48435202 48435202 A C MYEF2 Missense_Mutation p.F569C 0.23 deleterious(0) probably_damaging(0.999) TCGA-BR-8687-01 15 72244202 72244202 T G MYO9A Missense_Mutation p.S740R 0.19 tolerated(0.05) benign(0.063) TCGA-BR-8687-01 16 20371934 20371934 A G PDILT Missense_Mutation p.F488L 0.27 deleterious(0) probably_damaging(0.999) TCGA-BR-8687-01 16 20566689 20566689 T C ACSM2B Silent p.E166E 0.22 TCGA-BR-8687-01 16 20702409 20702409 T G ACSM1 Missense_Mutation p.E34D 0.30 tolerated(1) benign(0.062) TCGA-BR-8687-01 16 20808246 20808246 G A ACSM3 Silent p.G571G 0.21 TCGA-BR-8687-01 16 2140438 2140438 C T PKD1 Missense_Mutation p.A4098T 0.19 benign(0.227) TCGA-BR-8687-01 16 50106621 50106621 A G HEATR3 Silent p.S206S 0.14 TCGA-BR-8687-01 16 53243432 53243432 T C CHD9 Silent p.Y497Y 0.24 TCGA-BR-8687-01 16 68289889 68289889 T G PLA2G15 Silent p.A241A 0.50 TCGA-BR-8687-01 16 70917971 70917971 G A HYDIN Silent p.S3277S 0.27 TCGA-BR-8687-01 17 27010097 27010097 A G SUPT6H Missense_Mutation p.K622R 0.09 deleterious(0.04) benign(0.414) TCGA-BR-8687-01 17 27014227 27014227 A G SUPT6H Missense_Mutation p.K941R 0.30 tolerated(0.71) benign(0.042) TCGA-BR-8687-01 17 27240011 27240011 C T PHF12 Silent p.A526A 0.16 TCGA-BR-8687-01 17 27963194 27963194 T G SSH2 Missense_Mutation p.K658T 0.53 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BR-8687-01 17 3447882 3447882 T C TRPV3 Missense_Mutation p.N101S 0.43 tolerated(0.46) benign(0.02) TCGA-BR-8687-01 17 51900831 51900831 A T KIF2B Missense_Mutation p.K146M 0.08 deleterious(0.02) probably_damaging(0.969) TCGA-BR-8687-01 17 61972437 61972437 T C CSH1 Missense_Mutation p.E200G 0.14 deleterious(0) probably_damaging(0.932) TCGA-BR-8687-01 17 65157118 65157118 A G HELZ Missense_Mutation p.L657P 0.12 tolerated(0.15) possibly_damaging(0.566) TCGA-BR-8687-01 17 76134465 76134465 G T TMC8 Silent p.R523R 0.14 TCGA-BR-8687-01 17 78357495 78357495 C T RNF213 Missense_Mutation p.P4697S 0.13 benign(0.07) TCGA-BR-8687-01 17 8731507 8731507 C T PIK3R6 Silent p.R438R 0.69 TCGA-BR-8687-01 17 9837496 9837496 T G GAS7 Missense_Mutation p.K291T 0.09 deleterious(0.01) possibly_damaging(0.688) TCGA-BR-8687-01 18 14479234 14479234 G A CXADRP3 RNA 0.43 TCGA-BR-8687-01 18 21464785 21464785 C T LAMA3 Silent p.C1757C 0.12 TCGA-BR-8687-01 19 16860249 16860249 G A NWD1 Missense_Mutation p.G266S 0.30 tolerated(0.54) benign(0.031) TCGA-BR-8687-01 19 22379627 22379627 C A ZNF676 5'UTR 0.16 TCGA-BR-8687-01 19 37905139 37905139 A G ZNF569 Silent p.L141L 0.30 TCGA-BR-8687-01 19 41077980 41077980 G T SPTBN4 Missense_Mutation p.D2459Y 0.32 deleterious(0) probably_damaging(0.961) TCGA-BR-8687-01 19 43699390 43699390 A G PSG4 Silent p.L249L 0.24 TCGA-BR-8687-01 19 44223718 44223718 C T IRGC Silent p.N336N 0.15 TCGA-BR-8687-01 19 47197269 47197269 T C PRKD2 Missense_Mutation p.E480G 0.10 deleterious(0.01) probably_damaging(0.975) TCGA-BR-8687-01 19 47207786 47207786 G T PRKD2 Missense_Mutation p.T211N 0.32 tolerated(0.25) benign(0.002) TCGA-BR-8687-01 19 49652922 49652922 C T PPFIA3 Missense_Mutation p.A1158V 0.21 tolerated_low_confidence(0.6) benign(0.219) TCGA-BR-8687-01 19 55144500 55144500 A T LILRB1 Missense_Mutation p.Q331L 0.07 tolerated(0.05) benign(0.008) TCGA-BR-8687-01 19 55301707 55301707 T A CTB-61M7.1 RNA 0.19 TCGA-BR-8687-01 19 55665449 55665449 G A TNNI3 Silent p.S166S 0.33 TCGA-BR-8687-01 19 56370116 56370116 G A NLRP4 Missense_Mutation p.V453M 0.26 tolerated(0.33) benign(0.004) TCGA-BR-8687-01 19 56467184 56467184 T C NLRP8 Missense_Mutation p.L587P 0.41 deleterious(0.01) possibly_damaging(0.896) TCGA-BR-8687-01 19 56467229 56467229 C T NLRP8 Missense_Mutation p.P602L 0.24 tolerated(0.52) benign(0.003) TCGA-BR-8687-01 19 58578360 58578360 A C ZNF135 Missense_Mutation p.S194R 0.08 tolerated(0.35) benign(0.316) TCGA-BR-8687-01 19 58724210 58724210 A G ZNF274 Missense_Mutation p.R554G 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8687-01 19 7585905 7585905 C T ZNF358 3'UTR 0.36 TCGA-BR-8687-01 19 7833919 7833919 T G CLEC4M 3'UTR 0.33 TCGA-BR-8687-01 1 111494883 111494883 T G LRIF1 Missense_Mutation p.K208T 0.07 deleterious(0) possibly_damaging(0.859) TCGA-BR-8687-01 1 120337207 120337207 C A REG4 3'UTR 0.38 TCGA-BR-8687-01 1 1423270 1423270 C T ATAD3B Silent p.D414D 0.15 TCGA-BR-8687-01 1 150429979 150429979 G A RPRD2 Silent p.V362V 0.06 TCGA-BR-8687-01 1 159023326 159023326 A C IFI16 Missense_Mutation p.N641H 0.60 tolerated(0.6) possibly_damaging(0.81) TCGA-BR-8687-01 1 160582344 160582344 G T SLAMF1 Missense_Mutation p.F297L 0.16 tolerated(1) benign(0) TCGA-BR-8687-01 1 175355276 175355276 T C TNR Missense_Mutation p.S557G 0.28 deleterious(0.01) possibly_damaging(0.589) TCGA-BR-8687-01 1 201687644 201687644 C T NAV1 Silent p.D329D 0.48 TCGA-BR-8687-01 1 20996955 20996955 C A KIF17 Missense_Mutation p.A918S 0.11 tolerated(0.27) benign(0.011) TCGA-BR-8687-01 1 24417475 24417475 T C MYOM3 Missense_Mutation p.E415G 0.18 tolerated(1) benign(0.001) TCGA-BR-8687-01 1 248309375 248309375 A T OR2M5 Missense_Mutation p.K309M 0.60 deleterious(0.01) probably_damaging(0.928) TCGA-BR-8687-01 1 27106130 27106134 TGTTG - ARID1A Frame_Shift_Del p.M1914Ifs*5 0.40 TCGA-BR-8687-01 1 47079042 47079042 C A MOB3C Missense_Mutation p.W36C 0.38 deleterious_low_confidence(0.03) benign(0.132) TCGA-BR-8687-01 1 60359208 60359208 G A CYP2J2 3'UTR 0.17 TCGA-BR-8687-01 1 6169960 6169960 G A CHD5 Missense_Mutation p.L1825F 0.08 deleterious(0.01) probably_damaging(0.998) TCGA-BR-8687-01 1 62739395 62739395 G A KANK4 Missense_Mutation p.H461Y 0.28 tolerated(0.3) benign(0.021) TCGA-BR-8687-01 1 67486081 67486081 G A SLC35D1 Missense_Mutation p.L283F 0.09 deleterious(0) probably_damaging(1) TCGA-BR-8687-01 1 75036970 75036970 C A C1orf173 Missense_Mutation p.R1475L 0.07 tolerated(0.07) benign(0.196) TCGA-BR-8687-01 1 7887798 7887798 T G PER3 Missense_Mutation p.L929V 0.16 deleterious(0) possibly_damaging(0.636) TCGA-BR-8687-01 1 87101306 87101306 T G RP4-651E10.4 Intron 0.07 TCGA-BR-8687-01 20 18142527 18142527 G A CSRP2BP Missense_Mutation p.R249Q 0.18 tolerated(0.26) benign(0.364) TCGA-BR-8687-01 20 35858392 35858392 A G RPN2 Missense_Mutation p.K504R 0.13 tolerated(0.19) benign(0.019) TCGA-BR-8687-01 20 44045194 44045194 G A PIGT Silent p.Q75Q 0.20 TCGA-BR-8687-01 20 61391604 61391604 C A NTSR1 Silent p.R414R 0.85 TCGA-BR-8687-01 20 62839769 62839769 A G MYT1 Missense_Mutation p.Q407R 0.06 benign(0.065) TCGA-BR-8687-01 20 853672 853672 C T ANGPT4 Nonsense_Mutation p.W481* 0.28 TCGA-BR-8687-01 20 948593 948593 T G RSPO4 Missense_Mutation p.K90Q 0.13 deleterious(0) probably_damaging(0.984) TCGA-BR-8687-01 21 30316135 30316135 T G LTN1 Silent p.L1404L 0.33 TCGA-BR-8687-01 21 35190767 35190767 A G ITSN1 Missense_Mutation p.K975R 0.07 tolerated(0.11) benign(0.017) TCGA-BR-8687-01 21 37650614 37650614 T C DOPEY2 Missense_Mutation p.L1977P 0.26 deleterious(0) possibly_damaging(0.649) TCGA-BR-8687-01 22 23465312 23465312 C G GNAZ Missense_Mutation p.I254M 0.25 deleterious(0.01) benign(0.034) TCGA-BR-8687-01 22 23465478 23465478 G A GNAZ Missense_Mutation p.D310N 0.08 tolerated(0.2) benign(0.183) TCGA-BR-8687-01 22 26895380 26895380 C T TFIP11 Missense_Mutation p.R340Q 0.16 deleterious(0) probably_damaging(0.993) TCGA-BR-8687-01 22 30074212 30074212 C T NF2 Missense_Mutation p.P492S 0.33 tolerated(0.39) benign(0.053) TCGA-BR-8687-01 22 43287027 43287027 C T PACSIN2 Missense_Mutation p.G127S 0.10 deleterious(0.01) benign(0.057) TCGA-BR-8687-01 22 46804928 46804928 C T CELSR1 Missense_Mutation p.A1731T 0.23 deleterious(0.03) probably_damaging(0.969) TCGA-BR-8687-01 2 149803436 149803436 A C KIF5C Missense_Mutation p.S205R 0.65 deleterious(0) probably_damaging(1) TCGA-BR-8687-01 2 160801450 160801450 C T PLA2R1 Missense_Mutation p.E1371K 0.45 deleterious(0.02) benign(0.248) TCGA-BR-8687-01 2 170136035 170136035 T G LRP2 Missense_Mutation p.N471T 0.59 probably_damaging(0.985) TCGA-BR-8687-01 2 179197734 179197734 C T OSBPL6 Missense_Mutation p.S208L 0.11 tolerated(0.17) possibly_damaging(0.535) TCGA-BR-8687-01 2 179472303 179472303 T G TTN Missense_Mutation p.K17704N 0.04 TCGA-BR-8687-01 2 17998186 17998186 A T MSGN1 Missense_Mutation p.K134M 0.15 deleterious(0) probably_damaging(0.999) TCGA-BR-8687-01 2 183989086 183989086 C T NUP35 5'UTR 0.13 TCGA-BR-8687-01 2 184025818 184025818 A C NUP35 Missense_Mutation p.S314R 0.10 deleterious(0.02) possibly_damaging(0.871) TCGA-BR-8687-01 2 189860863 189860863 A G COL3A1 Missense_Mutation p.S541G 0.09 unknown(0) TCGA-BR-8687-01 2 196834765 196834765 T G DNAH7 Missense_Mutation p.E704D 0.11 tolerated(0.26) benign(0.007) TCGA-BR-8687-01 2 224462479 224462479 A C SCG2 Missense_Mutation p.L508V 0.31 tolerated(0.08) probably_damaging(0.999) TCGA-BR-8687-01 2 25497834 25497834 C T DNMT3A Silent p.E205E 0.26 TCGA-BR-8687-01 2 86406632 86406632 G A IMMT Missense_Mutation p.T78I 0.33 deleterious(0.03) possibly_damaging(0.673) TCGA-BR-8687-01 2 89459436 89459436 G A IGKV6-21 Silent p.S47S 0.09 TCGA-BR-8687-01 3 113753894 113753894 T G KIAA1407 Missense_Mutation p.Q232H 0.26 deleterious(0) probably_damaging(0.959) TCGA-BR-8687-01 3 124237327 124237327 G T KALRN 3'UTR 0.24 TCGA-BR-8687-01 3 129251538 129251538 T G RHO Missense_Mutation p.F287V 0.17 deleterious(0.04) benign(0.138) TCGA-BR-8687-01 3 133473336 133473336 C A TF Intron 0.15 TCGA-BR-8687-01 3 141497069 141497069 A G GRK7 5'UTR 0.36 TCGA-BR-8687-01 3 44842992 44842992 T G KIF15 Missense_Mutation p.F425V 0.28 tolerated(0.11) probably_damaging(0.996) TCGA-BR-8687-01 3 46415487 46415487 T G CCR5 3'UTR 0.37 TCGA-BR-8687-01 3 49680049 49680049 A C BSN Missense_Mutation p.S328R 0.82 unknown(0) TCGA-BR-8687-01 4 104577395 104577395 C T TACR3 Missense_Mutation p.D282N 0.09 tolerated(0.09) benign(0.345) TCGA-BR-8687-01 4 110223041 110223041 G A COL25A1 Silent p.A45A 0.20 TCGA-BR-8687-01 4 169138150 169138150 G A DDX60 Silent p.D1691D 0.24 TCGA-BR-8687-01 4 187554958 187554958 G A FAT1 Silent p.H1401H 0.17 TCGA-BR-8687-01 4 189012817 189012817 T C TRIML2 Missense_Mutation p.T292A 0.06 tolerated(0.25) possibly_damaging(0.472) TCGA-BR-8687-01 4 20591350 20591350 A G SLIT2 Missense_Mutation p.K1058E 0.24 tolerated(0.47) benign(0.345) TCGA-BR-8687-01 4 38046040 38046040 T G TBC1D1 Missense_Mutation p.F491V 0.21 tolerated(0.06) probably_damaging(0.954) TCGA-BR-8687-01 4 40440178 40440178 C T RBM47 Missense_Mutation p.V245M 0.35 deleterious(0.01) probably_damaging(0.965) TCGA-BR-8687-01 4 47582421 47582421 T C ATP10D Silent p.L1192L 0.05 TCGA-BR-8687-01 4 55561768 55561768 A G KIT Missense_Mutation p.E53G 0.24 tolerated(0.22) benign(0.332) TCGA-BR-8687-01 4 5586387 5586387 T C EVC2 Missense_Mutation p.K1007R 0.12 tolerated(0.07) benign(0.02) TCGA-BR-8687-01 4 68447130 68447130 C T STAP1 Silent p.S157S 0.48 TCGA-BR-8687-01 4 7742011 7742011 T G SORCS2 3'UTR 0.14 TCGA-BR-8687-01 4 83838294 83838294 T G THAP9 Missense_Mutation p.L310R 0.07 deleterious(0) probably_damaging(0.961) TCGA-BR-8687-01 4 96470024 96470024 G T UNC5C 5'UTR 0.08 TCGA-BR-8687-01 5 115335576 115335576 T G AQPEP Missense_Mutation p.F498V 0.06 deleterious(0) probably_damaging(0.987) TCGA-BR-8687-01 5 118484481 118484481 T G DMXL1 Missense_Mutation p.L987V 0.11 deleterious(0.02) probably_damaging(0.998) TCGA-BR-8687-01 5 137622934 137622934 T G CDC25C Missense_Mutation p.K317T 0.19 deleterious(0.01) possibly_damaging(0.842) TCGA-BR-8687-01 5 140228037 140228037 T G PCDHA9 5'UTR 0.11 TCGA-BR-8687-01 5 140236750 140236750 G A PCDHA10 Missense_Mutation p.V373I 0.22 deleterious_low_confidence(0.03) probably_damaging(0.944) TCGA-BR-8687-01 5 140516360 140516360 C T PCDHB5 Silent p.P448P 0.22 TCGA-BR-8687-01 5 141974774 141974774 G A FGF1 3'UTR 0.27 TCGA-BR-8687-01 5 14713673 14713673 G A ANKH Silent p.L415L 0.07 TCGA-BR-8687-01 5 180374616 180374616 A G BTNL8 Missense_Mutation p.K260E 0.09 tolerated(0.08) benign(0.022) TCGA-BR-8687-01 5 180375359 180375359 A C BTNL8 Missense_Mutation p.K264N 0.11 tolerated(0.06) benign(0.075) TCGA-BR-8687-01 5 180377026 180377026 A G BTNL8 Missense_Mutation p.S329G 0.09 deleterious(0.02) benign(0.294) TCGA-BR-8687-01 5 180377398 180377398 A C BTNL8 Missense_Mutation p.N453H 0.15 tolerated(0.87) benign(0.01) TCGA-BR-8687-01 5 180377441 180377443 AGA GG BTNL8 Frame_Shift_Del p.E467Gfs*103 0.11 TCGA-BR-8687-01 5 1879701 1879701 T G IRX4 Missense_Mutation p.K218T 0.14 deleterious(0) probably_damaging(0.968) TCGA-BR-8687-01 5 68513672 68513672 A G MRPS36 Missense_Mutation p.M6V 0.27 tolerated(0.16) benign(0.005) TCGA-BR-8687-01 5 840653 840653 G A ZDHHC11 Silent p.G247G 0.12 TCGA-BR-8687-01 6 116948943 116948943 A T RSPH4A Missense_Mutation p.K358M 0.20 deleterious(0) probably_damaging(0.999) TCGA-BR-8687-01 6 143793448 143793448 A G PEX3 Missense_Mutation p.T244A 0.11 tolerated(0.79) benign(0.005) TCGA-BR-8687-01 6 29274938 29274938 G A OR14J1 Missense_Mutation p.A158T 0.08 tolerated(1) benign(0.001) TCGA-BR-8687-01 6 38561952 38561952 A G BTBD9 Missense_Mutation p.F113L 0.23 tolerated(0.4) unknown(0) TCGA-BR-8687-01 6 44217547 44217547 T G HSP90AB1 Missense_Mutation p.S164A 0.27 deleterious(0.03) probably_damaging(0.939) TCGA-BR-8687-01 6 47847079 47847079 T C PTCHD4 Missense_Mutation p.S501G 0.42 deleterious(0.01) benign(0.245) TCGA-BR-8687-01 6 51890809 51890809 C T PKHD1 Missense_Mutation p.A1267T 0.22 deleterious(0.03) possibly_damaging(0.828) TCGA-BR-8687-01 6 56918933 56918933 A G KIAA1586 Missense_Mutation p.R546G 0.38 deleterious(0.01) benign(0.068) TCGA-BR-8687-01 6 69348663 69348663 T G BAI3 Silent p.T32T 0.07 TCGA-BR-8687-01 6 75862083 75862083 T C COL12A1 Silent p.E1227E 0.19 TCGA-BR-8687-01 6 90326294 90326294 T G ANKRD6 Missense_Mutation p.L211R 0.32 deleterious(0) probably_damaging(1) TCGA-BR-8687-01 7 106509364 106509364 A G PIK3CG Missense_Mutation p.E453G 0.15 tolerated(0.25) benign(0.186) TCGA-BR-8687-01 7 123092754 123092754 A T IQUB 3'UTR 0.33 TCGA-BR-8687-01 7 148801027 148801027 T G ZNF425 Missense_Mutation p.S646R 0.12 deleterious(0.04) probably_damaging(0.989) TCGA-BR-8687-01 7 155301755 155301755 A C CNPY1 5'UTR 0.40 TCGA-BR-8687-01 7 64023470 64023470 G A ZNF680 5'UTR 0.64 TCGA-BR-8687-01 7 74211859 74211859 C T GTF2IRD2 Silent p.K664K 0.24 TCGA-BR-8687-01 7 75932122 75932122 G A HSPB1 Silent p.Q31Q 0.21 TCGA-BR-8687-01 7 87160630 87160630 C A ABCB1 Nonsense_Mutation p.E889* 0.14 TCGA-BR-8687-01 8 130760962 130760962 A C GSDMC Missense_Mutation p.F438V 0.14 deleterious(0) probably_damaging(0.999) TCGA-BR-8687-01 8 139144979 139144979 T C FAM135B Missense_Mutation p.T1360A 0.09 deleterious(0.03) benign(0.186) TCGA-BR-8687-01 8 88365977 88365977 A G CNBD1 Silent p.E422E 0.39 TCGA-BR-8687-01 8 92998514 92998514 G A RUNX1T1 Nonsense_Mutation p.R384* 0.06 TCGA-BR-8687-01 9 101125010 101125010 T G GABBR2 Missense_Mutation p.K627T 0.47 tolerated(0.13) benign(0.097) TCGA-BR-8687-01 9 108397526 108397526 A G FKTN Missense_Mutation p.E456G 0.38 tolerated(0.06) benign(0.287) TCGA-BR-8687-01 9 117692483 117692483 G A TNFSF8 Missense_Mutation p.T34M 0.52 deleterious(0) possibly_damaging(0.789) TCGA-BR-8687-01 9 138377178 138377178 G A PPP1R26 Silent p.V274V 0.47 TCGA-BR-8687-01 9 21227998 21227998 A T IFNA17 Missense_Mutation p.F59I 0.06 deleterious(0) probably_damaging(0.997) TCGA-BR-8687-01 X 100117182 100117182 T C NOX1 Missense_Mutation p.K261R 0.21 tolerated(0.13) benign(0) TCGA-BR-8687-01 X 101095862 101095862 C T NXF5 Silent p.L162L 0.11 TCGA-BR-8687-01 X 101857231 101857231 T C ARMCX5 Silent p.A54A 0.13 TCGA-BR-8687-01 X 102004547 102004547 A G BHLHB9 Silent p.K208K 0.19 TCGA-BR-8687-01 X 102337226 102337226 T G NXF3 Missense_Mutation p.S283R 0.20 deleterious(0) benign(0.015) TCGA-BR-8687-01 X 108887374 108887374 T C ACSL4 Missense_Mutation p.S674G 0.20 deleterious(0.02) probably_damaging(0.977) TCGA-BR-8687-01 X 114142023 114142023 A G HTR2C 3'UTR 0.15 TCGA-BR-8687-01 X 117788650 117788650 A T DOCK11 Missense_Mutation p.E1594V 0.23 deleterious(0) probably_damaging(0.931) TCGA-BR-8687-01 X 123657356 123657356 A C TENM1 Missense_Mutation p.V964G 0.33 deleterious(0) benign(0.326) TCGA-BR-8687-01 X 125298907 125298907 G A DCAF12L2 Missense_Mutation p.P334L 0.38 tolerated(0.58) benign(0.003) TCGA-BR-8687-01 X 148627278 148627278 G T CXorf40A Missense_Mutation p.Q34H 0.16 tolerated(1) benign(0.001) TCGA-BR-8687-01 X 151817720 151817720 C T GABRQ Silent p.T178T 0.09 TCGA-BR-8687-01 X 153042361 153042361 T G PLXNB3 Missense_Mutation p.V1641G 0.33 deleterious(0) possibly_damaging(0.809) TCGA-BR-8687-01 X 26157256 26157256 T C MAGEB18 Silent p.L52L 0.10 TCGA-BR-8687-01 X 46360233 46360233 T G ZNF674 Missense_Mutation p.K264T 0.21 deleterious(0.01) probably_damaging(0.997) TCGA-BR-8687-01 X 49061780 49061780 G A CACNA1F Silent p.F1917F 0.09 TCGA-BR-8687-01 X 57621002 57621002 A G ZXDB 3'UTR 0.29 TCGA-BR-8687-01 X 78010358 78010358 A C LPAR4 5'UTR 0.10 TCGA-BR-8687-01 X 9693829 9693829 T G GPR143 Missense_Mutation p.K391T 0.14 tolerated_low_confidence(0.56) benign(0.055) TCGA-BR-8690-01 10 105526894 105526894 C A SH3PXD2A Missense_Mutation p.G63C 0.10 deleterious(0) probably_damaging(1) TCGA-BR-8690-01 10 118458177 118458177 G A HSPA12A Missense_Mutation p.A172V 0.05 deleterious(0) probably_damaging(0.993) TCGA-BR-8690-01 10 25279504 25279504 C T ENKUR Missense_Mutation p.R161Q 0.18 deleterious(0.01) probably_damaging(0.993) TCGA-BR-8690-01 10 49393656 49393656 C A FRMPD2 Missense_Mutation p.A767S 0.12 tolerated(0.46) benign(0.084) TCGA-BR-8690-01 10 53458048 53458048 C A CSTF2T Missense_Mutation p.R421L 0.13 deleterious_low_confidence(0.01) probably_damaging(0.968) TCGA-BR-8690-01 10 70446291 70446291 G C TET1 Missense_Mutation p.R1744T 0.21 tolerated(0.18) possibly_damaging(0.569) TCGA-BR-8690-01 10 73538045 73538045 C T C10orf54 5'Flank 0.18 TCGA-BR-8690-01 10 74658610 74658610 G A OIT3 Missense_Mutation p.A84T 0.18 deleterious(0) probably_damaging(0.956) TCGA-BR-8690-01 10 95931103 95931103 C T PLCE1 Silent p.V553V 0.10 TCGA-BR-8690-01 11 1087573 1087573 C T MUC2 Silent p.C1108C 0.10 TCGA-BR-8690-01 11 110102550 110102550 T A RDX Intron 0.14 TCGA-BR-8690-01 11 18010292 18010292 C A SERGEF Missense_Mutation p.E232D 0.13 tolerated(0.47) benign(0.131) TCGA-BR-8690-01 11 46430169 46430169 C T AMBRA1 Silent p.V1009V 0.17 TCGA-BR-8690-01 11 58391931 58391931 C A CNTF Missense_Mutation p.S180Y 0.15 deleterious(0) probably_damaging(0.975) TCGA-BR-8690-01 11 76905526 76905526 C T MYO7A Missense_Mutation p.T1427M 0.13 tolerated(0.06) probably_damaging(0.91) TCGA-BR-8690-01 11 88300299 88300299 T G GRM5 Missense_Mutation p.K851T 0.12 deleterious(0) probably_damaging(0.997) TCGA-BR-8690-01 12 100957382 100957382 T C NR1H4 3'Flank 0.30 TCGA-BR-8690-01 12 10312524 10312524 A G OLR1 Silent p.A259A 0.27 TCGA-BR-8690-01 12 113316957 113316957 A G RPH3A Missense_Mutation p.Y402C 0.18 deleterious(0) probably_damaging(1) TCGA-BR-8690-01 12 21997801 21997801 G T ABCC9 Missense_Mutation p.L1049I 0.21 tolerated(0.07) benign(0.412) TCGA-BR-8690-01 12 45797015 45797015 A C ANO6 Missense_Mutation p.R612S 0.14 deleterious(0) probably_damaging(0.911) TCGA-BR-8690-01 12 51717838 51717838 C T BIN2 Missense_Mutation p.V17M 0.07 tolerated(0.1) benign(0.403) TCGA-BR-8690-01 12 56420729 56420729 G A IKZF4 Missense_Mutation p.G151S 0.30 deleterious(0.01) probably_damaging(0.921) TCGA-BR-8690-01 12 57630910 57630910 C T NDUFA4L2 5'UTR 0.25 TCGA-BR-8690-01 12 666773 666773 G C B4GALNT3 Splice_Site p.X794_splice 0.32 TCGA-BR-8690-01 13 110831620 110831620 C A COL4A1 Missense_Mutation p.R781I 0.14 benign(0.172) TCGA-BR-8690-01 13 20041401 20041401 A C TPTE2 Missense_Mutation p.I159S 0.08 tolerated(0.27) benign(0.065) TCGA-BR-8690-01 13 86369127 86369127 A C SLITRK6 Missense_Mutation p.L506R 0.28 deleterious(0) probably_damaging(1) TCGA-BR-8690-01 14 102478443 102478443 C A DYNC1H1 Missense_Mutation p.L2284M 0.06 probably_damaging(0.991) TCGA-BR-8690-01 14 24624667 24624667 G C RNF31 Missense_Mutation p.K783N 0.16 deleterious(0) probably_damaging(0.994) TCGA-BR-8690-01 14 59112668 59112668 G A DACT1 Missense_Mutation p.A443T 0.11 tolerated(0.38) benign(0.03) TCGA-BR-8690-01 14 65507581 65507581 C T FNTB Silent p.L256L 0.14 TCGA-BR-8690-01 15 31318418 31318418 C T TRPM1 Missense_Mutation p.V1202M 0.14 deleterious(0.01) probably_damaging(0.994) TCGA-BR-8690-01 15 37390190 37390190 G A MEIS2 Missense_Mutation p.R75W 0.15 deleterious(0.02) probably_damaging(0.993) TCGA-BR-8690-01 15 48712976 48712976 C T FBN1 Missense_Mutation p.R2576H 0.12 probably_damaging(0.984) TCGA-BR-8690-01 15 48738931 48738931 G T FBN1 Missense_Mutation p.F1920L 0.10 benign(0.032) TCGA-BR-8690-01 15 89384998 89384998 C A ACAN Silent p.G219G 0.16 TCGA-BR-8690-01 16 11001447 11001447 C T CIITA Missense_Mutation p.R700W 0.15 deleterious(0.02) benign(0.209) TCGA-BR-8690-01 16 1392041 1392041 C A BAIAP3 Silent p.V312V 0.07 TCGA-BR-8690-01 16 20976432 20976432 T A DNAH3 Missense_Mutation p.K2925I 0.29 deleterious(0) probably_damaging(1) TCGA-BR-8690-01 16 20976433 20976433 T G DNAH3 Missense_Mutation p.K2925Q 0.31 deleterious(0) probably_damaging(1) TCGA-BR-8690-01 16 2161261 2161261 C T PKD1 Missense_Mutation p.A1303T 0.30 benign(0.009) TCGA-BR-8690-01 16 2296861 2296861 G C ECI1 Missense_Mutation p.S98W 0.07 deleterious(0) probably_damaging(1) TCGA-BR-8690-01 16 29809747 29809747 T C KIF22 Missense_Mutation p.S107P 0.06 deleterious(0.01) probably_damaging(0.937) TCGA-BR-8690-01 16 30018255 30018255 C A DOC2A Missense_Mutation p.E243D 0.27 tolerated(0.1) benign(0.003) TCGA-BR-8690-01 16 3786799 3786799 A T CREBBP Missense_Mutation p.I1471N 0.18 unknown(0) TCGA-BR-8690-01 16 84940234 84940234 G T CRISPLD2 Missense_Mutation p.A494S 0.23 deleterious(0.02) benign(0.064) TCGA-BR-8690-01 16 88752875 88752875 G C SNAI3 5'UTR 0.21 TCGA-BR-8690-01 17 27068495 27068496 - G NEK8 Frame_Shift_Ins p.L654Tfs*9 0.17 TCGA-BR-8690-01 17 29848243 29848243 C T RAB11FIP4 Missense_Mutation p.S208L 0.08 deleterious(0) probably_damaging(0.963) TCGA-BR-8690-01 17 38854498 38854498 T G KRT24 Missense_Mutation p.K523N 0.17 tolerated(0.06) unknown(0) TCGA-BR-8690-01 17 40001552 40001552 C T KLHL10 Missense_Mutation p.R287C 0.04 deleterious(0) probably_damaging(0.999) TCGA-BR-8690-01 17 48156529 48156529 G A ITGA3 Silent p.L830L 0.12 TCGA-BR-8690-01 17 7578500 7578500 G A TP53 Nonsense_Mutation p.Q144* 0.44 TCGA-BR-8690-01 17 7674764 7674764 T G DNAH2 Silent p.A1493A 0.32 TCGA-BR-8690-01 17 80726295 80726295 G A TBCD Splice_Site p.X146_splice 0.13 TCGA-BR-8690-01 18 29044178 29044178 C T DSG3 Silent p.T368T 0.09 TCGA-BR-8690-01 18 77679319 77679319 C A PQLC1 Missense_Mutation p.G158V 0.31 deleterious(0.01) benign(0.129) TCGA-BR-8690-01 19 11289026 11289026 G A KANK2 Silent p.N513N 0.07 TCGA-BR-8690-01 19 12128997 12128997 C G ZNF433 Missense_Mutation p.R41S 0.06 tolerated(0.11) possibly_damaging(0.851) TCGA-BR-8690-01 19 33870080 33870080 G A CEBPG 5'UTR 0.22 TCGA-BR-8690-01 19 39218653 39218653 A C ACTN4 Missense_Mutation p.E802A 0.12 tolerated(0.68) possibly_damaging(0.527) TCGA-BR-8690-01 19 50926202 50926202 T A SPIB Missense_Mutation p.Y83N 0.13 deleterious(0.02) possibly_damaging(0.89) TCGA-BR-8690-01 19 54678121 54678121 C T MBOAT7 Missense_Mutation p.A346T 0.20 deleterious(0.01) possibly_damaging(0.716) TCGA-BR-8690-01 19 56329269 56329269 C T NLRP11 Splice_Site p.X91_splice 0.10 TCGA-BR-8690-01 19 57175530 57175530 A G ZNF835 Missense_Mutation p.V346A 0.33 tolerated(0.54) benign(0.084) TCGA-BR-8690-01 1 110199440 110199440 C T GSTM4 Intron 0.34 TCGA-BR-8690-01 1 114968300 114968300 T A TRIM33 Missense_Mutation p.N489I 0.44 tolerated(0.16) possibly_damaging(0.731) TCGA-BR-8690-01 1 151090703 151090703 A G GABPB2 Missense_Mutation p.R440G 0.17 tolerated_low_confidence(1) benign(0) TCGA-BR-8690-01 1 152282658 152282658 G A FLG Silent p.A1568A 0.31 TCGA-BR-8690-01 1 152287259 152287259 A G FLG Intron 0.09 TCGA-BR-8690-01 1 154544415 154544415 C T CHRNB2 Silent p.G372G 0.67 TCGA-BR-8690-01 1 157771760 157771760 C T FCRL1 Silent p.E277E 0.23 TCGA-BR-8690-01 1 157804383 157804383 G A CD5L Nonsense_Mutation p.Q178* 0.23 TCGA-BR-8690-01 1 180905367 180905367 A T KIAA1614 Missense_Mutation p.E774D 0.10 tolerated(0.06) possibly_damaging(0.772) TCGA-BR-8690-01 1 182026306 182026306 C T ZNF648 Silent p.A280A 0.45 TCGA-BR-8690-01 1 19547424 19547424 T C EMC1 Intron 0.11 TCGA-BR-8690-01 1 196205114 196205114 A G KCNT2 Splice_Site p.X1099_splice 0.10 TCGA-BR-8690-01 1 212534003 212534003 G A PPP2R5A Missense_Mutation p.R451H 0.10 deleterious(0.01) possibly_damaging(0.709) TCGA-BR-8690-01 1 212798999 212798999 C T FAM71A Silent p.P260P 0.14 TCGA-BR-8690-01 1 228509263 228509263 C T OBSCN Silent p.T5864T 0.20 TCGA-BR-8690-01 1 236917358 236917358 C G ACTN2 Missense_Mutation p.P651A 0.28 tolerated(0.09) benign(0.404) TCGA-BR-8690-01 1 32658837 32658837 A T TXLNA Missense_Mutation p.E396V 0.09 deleterious(0) probably_damaging(0.99) TCGA-BR-8690-01 1 46769382 46769382 G C UQCRH 5'UTR 0.11 TCGA-BR-8690-01 1 65304184 65304184 G C JAK1 Silent p.L977L 0.23 TCGA-BR-8690-01 1 79387436 79387436 C G ELTD1 Missense_Mutation p.W373C 0.15 deleterious(0) probably_damaging(1) TCGA-BR-8690-01 1 9791209 9791209 G A CLSTN1 Intron 0.36 TCGA-BR-8690-01 20 3654882 3654882 A G ADAM33 Missense_Mutation p.V217A 0.11 deleterious(0) probably_damaging(1) TCGA-BR-8690-01 20 37137784 37137784 C G RALGAPB Missense_Mutation p.L269V 0.09 deleterious(0.05) possibly_damaging(0.527) TCGA-BR-8690-01 20 40714431 40714431 G A PTPRT Silent p.F1303F 0.13 TCGA-BR-8690-01 20 45354654 45354654 C T SLC2A10 Missense_Mutation p.P327S 0.08 tolerated(0.74) probably_damaging(0.976) TCGA-BR-8690-01 20 62331861 62331861 G A ARFRP1 Silent p.I180I 0.10 TCGA-BR-8690-01 20 62339972 62339972 C G ZGPAT Missense_Mutation p.R14G 0.08 tolerated(0.62) benign(0.002) TCGA-BR-8690-01 20 62577873 62577873 G C UCKL1 Missense_Mutation p.I79M 0.07 deleterious(0.01) possibly_damaging(0.86) TCGA-BR-8690-01 21 41496224 41496224 C T DSCAM Silent p.A1198A 0.29 TCGA-BR-8690-01 21 46000423 46000423 G A KRTAP10-5 Silent p.S11S 0.11 TCGA-BR-8690-01 22 32275619 32275619 A G DEPDC5 Missense_Mutation p.H1296R 0.24 tolerated(0.6) possibly_damaging(0.597) TCGA-BR-8690-01 2 139326567 139326567 T A SPOPL Missense_Mutation p.L366I 0.08 deleterious(0.01) possibly_damaging(0.831) TCGA-BR-8690-01 2 162821608 162821608 G A SLC4A10 Silent p.T1028T 0.16 TCGA-BR-8690-01 2 179486701 179486702 TT - TTN Frame_Shift_Del p.K14983Gfs*5 0.30 TCGA-BR-8690-01 2 179584365 179584365 C T TTN Missense_Mutation p.E7952K 0.11 TCGA-BR-8690-01 2 186678329 186678329 C A FSIP2 Missense_Mutation p.L6718I 0.15 probably_damaging(0.995) TCGA-BR-8690-01 2 198362005 198362005 T C HSPD1 Missense_Mutation p.K96E 0.13 deleterious(0.03) benign(0.403) TCGA-BR-8690-01 2 206165333 206165334 - GA PARD3B Frame_Shift_Ins p.V695Rfs*40 0.14 TCGA-BR-8690-01 2 212286786 212286786 C T ERBB4 Silent p.L970L 0.18 TCGA-BR-8690-01 2 220355285 220355285 C A SPEG Missense_Mutation p.H3026N 0.14 probably_damaging(0.996) TCGA-BR-8690-01 2 234749815 234749815 C A HJURP Missense_Mutation p.Q537H 0.11 deleterious(0.03) possibly_damaging(0.496) TCGA-BR-8690-01 2 27890132 27890132 T A SLC4A1AP Intron 0.08 TCGA-BR-8690-01 2 74129543 74129543 C A ACTG2 Missense_Mutation p.S61R 0.11 deleterious_low_confidence(0) possibly_damaging(0.753) TCGA-BR-8690-01 2 80808879 80808879 G T CTNNA2 Missense_Mutation p.D648Y 0.06 deleterious(0.03) benign(0.008) TCGA-BR-8690-01 2 9630307 9630307 T A ADAM17 Nonstop_Mutation p.*825Lext*7 0.12 TCGA-BR-8690-01 3 119133443 119133443 C T ARHGAP31 Silent p.D889D 0.13 TCGA-BR-8690-01 3 119133998 119133998 C T ARHGAP31 Silent p.S1074S 0.23 TCGA-BR-8690-01 3 130887684 130887684 A G NEK11 Missense_Mutation p.H396R 0.35 tolerated(0.34) benign(0.001) TCGA-BR-8690-01 3 142048403 142048403 A G XRN1 Missense_Mutation p.M1425T 0.19 tolerated_low_confidence(0.54) benign(0.017) TCGA-BR-8690-01 3 164712098 164712098 T A SI Missense_Mutation p.Q1596H 0.09 deleterious(0) probably_damaging(0.98) TCGA-BR-8690-01 3 89456511 89456511 T G EPHA3 Missense_Mutation p.L563V 0.08 tolerated(0.56) benign(0.047) TCGA-BR-8690-01 4 114267061 114267061 C T ANK2 Silent p.R1418R 0.28 TCGA-BR-8690-01 4 126370306 126370306 T A FAT4 Missense_Mutation p.M2712K 0.21 benign(0) TCGA-BR-8690-01 4 146025557 146025557 G A ABCE1 5'UTR 0.40 TCGA-BR-8690-01 4 164393459 164393459 G T TKTL2 Silent p.T476T 0.23 TCGA-BR-8690-01 4 166795130 166795130 T A TLL1 Missense_Mutation p.L25Q 0.12 deleterious_low_confidence(0.02) benign(0.019) TCGA-BR-8690-01 4 170985953 170985953 C G AADAT Missense_Mutation p.A351P 0.18 tolerated(0.06) benign(0.15) TCGA-BR-8690-01 4 20618788 20618788 A T SLIT2 Missense_Mutation p.D1368V 0.10 deleterious(0) probably_damaging(0.998) TCGA-BR-8690-01 4 46067511 46067511 T C GABRG1 Missense_Mutation p.N138D 0.25 tolerated(0.34) possibly_damaging(0.526) TCGA-BR-8690-01 4 47033961 47033961 G A GABRB1 Silent p.V37V 0.23 TCGA-BR-8690-01 4 6107560 6107560 G A JAKMIP1 Silent p.R88R 0.32 TCGA-BR-8690-01 4 70146541 70146542 - G UGT2B28 Nonsense_Mutation p.Y108* 0.22 TCGA-BR-8690-01 4 70505297 70505297 A T UGT2A2 Nonsense_Mutation p.L21* 0.12 TCGA-BR-8690-01 4 71654634 71654634 C T RUFY3 Missense_Mutation p.R395W 0.41 deleterious(0) probably_damaging(0.993) TCGA-BR-8690-01 4 76794425 76794425 C A PPEF2 Missense_Mutation p.G454V 0.24 deleterious(0) probably_damaging(1) TCGA-BR-8690-01 4 86863309 86863309 A T ARHGAP24 Missense_Mutation p.D161V 0.21 deleterious(0) benign(0.433) TCGA-BR-8690-01 4 86863412 86863412 G T ARHGAP24 Missense_Mutation p.K195N 0.20 deleterious(0) benign(0.345) TCGA-BR-8690-01 4 86921732 86921732 C T ARHGAP24 Nonsense_Mutation p.R702* 0.21 TCGA-BR-8690-01 5 101709135 101709135 C T SLCO6A1 Missense_Mutation p.R694H 0.34 tolerated(0.42) benign(0.155) TCGA-BR-8690-01 5 128321008 128321009 - G SLC27A6 Frame_Shift_Ins p.I222Sfs*16 0.12 TCGA-BR-8690-01 5 151051184 151051184 C T SPARC Missense_Mutation p.V94M 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-BR-8690-01 5 169188588 169188588 C A DOCK2 Missense_Mutation p.S838Y 0.15 deleterious(0) possibly_damaging(0.862) TCGA-BR-8690-01 5 179292898 179292898 C T TBC1D9B Intron 0.37 TCGA-BR-8690-01 5 26881493 26881493 C A CDH9 Nonsense_Mutation p.E708* 0.04 TCGA-BR-8690-01 5 63256773 63256773 C T HTR1A Silent p.S258S 0.06 TCGA-BR-8690-01 6 125584070 125584070 G C TPD52L1 Missense_Mutation p.G193R 0.27 deleterious_low_confidence(0.05) possibly_damaging(0.453) TCGA-BR-8690-01 6 126329563 126329563 T - TRMT11 Frame_Shift_Del p.F236Lfs*10 0.11 TCGA-BR-8690-01 6 127796864 127796864 C T SOGA3 Silent p.P769P 0.18 TCGA-BR-8690-01 6 28872099 28872099 C T TRIM27 Silent p.R430R 0.23 TCGA-BR-8690-01 6 30638885 30638885 C T DHX16 Missense_Mutation p.R125Q 0.17 tolerated(0.09) unknown(0) TCGA-BR-8690-01 6 31976222 31976222 T C AL645922.1 5'Flank 0.43 TCGA-BR-8690-01 6 33141499 33141499 G T COL11A2 Silent p.P783P 0.16 TCGA-BR-8690-01 6 33385863 33385863 C G CUTA Splice_Site p.X33_splice 0.21 TCGA-BR-8690-01 6 41738614 41738614 C A FRS3 Missense_Mutation p.G408W 0.30 tolerated(0.17) probably_damaging(0.949) TCGA-BR-8690-01 6 42175842 42175842 G T MRPS10 3'UTR 0.15 TCGA-BR-8690-01 6 44270564 44270564 G A AARS2 Missense_Mutation p.A780V 0.08 deleterious(0.02) benign(0.124) TCGA-BR-8690-01 6 45332990 45332990 C T SUPT3H 5'UTR 0.12 TCGA-BR-8690-01 6 73900347 73900347 A T KCNQ5 Silent p.P562P 0.29 TCGA-BR-8690-01 6 76022220 76022222 GAA - FILIP1 In_Frame_Del p.L1109del 0.17 TCGA-BR-8690-01 7 101821910 101821910 G T CUX1 Missense_Mutation p.Q341H 0.43 deleterious(0) unknown(0) TCGA-BR-8690-01 7 121773576 121773576 C G AASS Missense_Mutation p.D69H 0.06 tolerated(0.13) probably_damaging(0.928) TCGA-BR-8690-01 7 142013463 142013463 C T TRBV4-1 Silent p.A106A 0.10 TCGA-BR-8690-01 7 150325053 150325053 T G GIMAP6 Missense_Mutation p.Q211H 0.04 deleterious(0) probably_damaging(1) TCGA-BR-8690-01 7 150733041 150733041 C T ABCB8 Nonsense_Mutation p.Q334* 0.14 TCGA-BR-8690-01 7 151164162 151164162 C T RHEB 3'UTR 0.28 TCGA-BR-8690-01 7 82579130 82579130 G A PCLO Missense_Mutation p.R3592C 0.26 unknown(0) TCGA-BR-8690-01 7 87179782 87179782 A G ABCB1 Splice_Site p.X408_splice 0.17 TCGA-BR-8690-01 7 92887535 92887535 A G CCDC132 Missense_Mutation p.K163E 0.25 deleterious(0.01) possibly_damaging(0.676) TCGA-BR-8690-01 7 99473925 99473925 G T OR2AE1 Silent p.L244L 0.30 TCGA-BR-8690-01 8 103297970 103297970 A C UBR5 Nonsense_Mutation p.L1752* 0.38 TCGA-BR-8690-01 8 110980304 110980304 A C KCNV1 3'UTR 0.13 TCGA-BR-8690-01 8 113933973 113933973 A C CSMD3 Missense_Mutation p.S506A 0.11 tolerated(0.79) benign(0.002) TCGA-BR-8690-01 8 116427158 116427158 A C TRPS1 Nonsense_Mutation p.L993* 0.08 TCGA-BR-8690-01 8 122626532 122626532 C G HAS2 Silent p.V492V 0.11 TCGA-BR-8690-01 8 12286292 12286292 G A FAM86B2 Nonsense_Mutation p.R198* 0.15 TCGA-BR-8690-01 8 133584696 133584696 G T LRRC6 Missense_Mutation p.P420H 0.06 deleterious(0) probably_damaging(0.984) TCGA-BR-8690-01 8 33416224 33416224 G A RNF122 Nonsense_Mutation p.Q31* 0.12 TCGA-BR-8690-01 8 55371955 55371955 C T SOX17 Silent p.D215D 0.17 TCGA-BR-8690-01 8 72951146 72951146 C A TRPA1 Missense_Mutation p.G750V 0.11 tolerated(0.29) possibly_damaging(0.801) TCGA-BR-8690-01 9 100257957 100257957 A G TDRD7 Missense_Mutation p.N1030S 0.09 tolerated(0.45) benign(0) TCGA-BR-8690-01 9 113265372 113265372 T C SVEP1 Missense_Mutation p.K477E 0.26 possibly_damaging(0.626) TCGA-BR-8690-01 9 120475724 120475724 T G TLR4 Missense_Mutation p.F440V 0.15 tolerated(0.09) probably_damaging(0.987) TCGA-BR-8690-01 9 123785724 123785724 A C C5 Silent p.A358A 0.21 TCGA-BR-8690-01 9 35680798 35680798 T C CA9 Missense_Mutation p.V429A 0.05 tolerated(0.09) benign(0.013) TCGA-BR-8690-01 9 95609461 95609461 C T ZNF484 Silent p.K538K 0.10 TCGA-BR-8690-01 9 98240429 98240429 C T PTCH1 Missense_Mutation p.V419M 0.15 deleterious(0) possibly_damaging(0.81) TCGA-BR-8690-01 X 108635293 108635293 T C GUCY2F Silent p.E876E 0.18 TCGA-BR-8690-01 X 129060230 129060230 C T UTP14A Missense_Mutation p.A653V 0.08 tolerated(0.09) benign(0.02) TCGA-BR-8690-01 X 140953351 140953351 A T MAGEC3 Missense_Mutation p.Q73L 0.29 deleterious_low_confidence(0) benign(0.069) TCGA-BR-8690-01 X 146312299 146312299 T C MIR506 RNA 0.10 TCGA-BR-8690-01 X 150349823 150349823 C A GPR50 Missense_Mutation p.P590T 0.05 tolerated_low_confidence(0.07) benign(0.002) TCGA-BR-8690-01 X 151358276 151358276 C A GABRA3 Missense_Mutation p.A357S 0.32 deleterious(0) probably_damaging(1) TCGA-BR-8690-01 X 151869654 151869654 A T MAGEA6 Missense_Mutation p.K115M 0.05 tolerated(0.11) benign(0.264) TCGA-BR-8690-01 X 154225313 154225313 T G F8 Missense_Mutation p.K108T 0.12 deleterious(0) probably_damaging(0.997) TCGA-BR-8690-01 X 1557992 1557992 C T ASMTL Missense_Mutation p.V91M 0.13 deleterious(0.01) probably_damaging(0.997) TCGA-BR-8690-01 X 32366552 32366552 G T DMD Missense_Mutation p.L1807M 0.14 possibly_damaging(0.82) TCGA-BR-8690-01 X 32583888 32583888 T G DMD Missense_Mutation p.E641D 0.26 possibly_damaging(0.764) TCGA-BR-8690-01 X 50111946 50111946 T G DGKK RNA 0.16 TCGA-BR-8690-01 X 63444310 63444310 C T ASB12 Missense_Mutation p.V288I 0.24 tolerated(1) benign(0.008) TCGA-BR-8690-01 X 66765645 66765645 T G AR Silent p.T219T 0.16 TCGA-BR-8690-01 X 66766242 66766242 T A AR Silent p.G418G 0.20 TCGA-BR-8690-01 X 70361778 70361778 G A MED12 Missense_Mutation p.A2152T 0.17 unknown(0) TCGA-BR-8690-01 X 78011061 78011061 G A LPAR4 Missense_Mutation p.R232H 0.11 tolerated(0.06) possibly_damaging(0.557) TCGA-BR-8690-01 X 91133203 91133203 C T PCDH11X Missense_Mutation p.S655L 0.17 deleterious(0) probably_damaging(0.992) TCGA-BR-A44T-01 10 101716054 101716054 C T DNMBP Missense_Mutation p.E393K 0.07 tolerated_low_confidence(0.17) benign(0.003) TCGA-BR-A44T-01 10 12940586 12940586 G A CCDC3 Missense_Mutation p.R215W 0.07 deleterious_low_confidence(0) possibly_damaging(0.859) TCGA-BR-A44T-01 10 29581519 29581519 G A LYZL1 Missense_Mutation p.D117N 0.08 tolerated(0.18) benign(0.377) TCGA-BR-A44T-01 10 55780164 55780164 C A PCDH15 Missense_Mutation p.D847Y 0.04 deleterious(0) probably_damaging(1) TCGA-BR-A44T-01 12 132515769 132515769 C T EP400 Intron 0.03 TCGA-BR-A44T-01 14 68222803 68222803 C T ZFYVE26 Silent p.K2216K 0.05 TCGA-BR-A44T-01 16 68844154 68844154 A T CDH1 Missense_Mutation p.I248F 0.07 deleterious(0) probably_damaging(0.986) TCGA-BR-A44T-01 19 10403881 10403881 A T ICAM5 Missense_Mutation p.D475V 0.06 tolerated(0.47) benign(0.001) TCGA-BR-A44T-01 19 31039733 31039733 C A ZNF536 Silent p.I1069I 0.07 TCGA-BR-A44T-01 19 41292793 41292793 C T RAB4B Silent p.Y189Y 0.06 TCGA-BR-A44T-01 19 7965138 7965138 C T LRRC8E Silent p.S577S 0.06 TCGA-BR-A44T-01 1 167839531 167839531 A G ADCY10 Missense_Mutation p.M527T 0.09 tolerated(0.31) benign(0) TCGA-BR-A44T-01 1 207109129 207109130 - T PIGR Frame_Shift_Ins p.V362Gfs*15 0.12 TCGA-BR-A44T-01 22 31059889 31059889 G A DUSP18 Silent p.A34A 0.06 TCGA-BR-A44T-01 2 71797446 71797446 C T DYSF Missense_Mutation p.R1023W 0.08 deleterious(0) probably_damaging(1) TCGA-BR-A44T-01 3 134256014 134256014 G A CEP63 Silent p.S153S 0.07 TCGA-BR-A44T-01 4 47427792 47427792 G A GABRB1 Missense_Mutation p.M394I 0.05 tolerated(0.43) benign(0.006) TCGA-BR-A44T-01 5 140482357 140482357 C T PCDHB3 Silent p.F708F 0.04 TCGA-BR-A44T-01 5 150901071 150901071 C T FAT2 Missense_Mutation p.E3695K 0.09 benign(0.001) TCGA-BR-A44T-01 6 117246619 117246619 C T RFX6 Missense_Mutation p.A561V 0.05 deleterious(0.03) probably_damaging(0.946) TCGA-BR-A44T-01 6 170873698 170873698 G A TBP Missense_Mutation p.R188Q 0.08 deleterious(0) possibly_damaging(0.865) TCGA-BR-A44T-01 6 398916 398916 C T IRF4 Silent p.A242A 0.07 TCGA-BR-A44T-01 7 112424364 112424364 A G TMEM168 Silent p.L173L 0.08 TCGA-BR-A44T-01 X 50376561 50376561 G T SHROOM4 Missense_Mutation p.H838N 0.03 tolerated(0.24) benign(0.109) TCGA-BR-A44U-01 10 123845412 123845412 G A TACC2 Missense_Mutation p.G1133S 0.05 benign(0.045) TCGA-BR-A44U-01 10 125557575 125557575 C T CPXM2 Missense_Mutation p.R269H 0.35 deleterious(0) probably_damaging(1) TCGA-BR-A44U-01 10 134941940 134941940 G A GPR123 Missense_Mutation p.R203H 0.41 deleterious(0) probably_damaging(0.988) TCGA-BR-A44U-01 10 55698634 55698634 A C PCDH15 Missense_Mutation p.L1105R 0.29 deleterious(0.04) possibly_damaging(0.904) TCGA-BR-A44U-01 10 7621729 7621729 C T ITIH5 Silent p.S469S 0.17 TCGA-BR-A44U-01 10 93392743 93392743 G A PPP1R3C 5'UTR 0.16 TCGA-BR-A44U-01 10 96348000 96348000 C T HELLS Silent p.F447F 0.28 TCGA-BR-A44U-01 11 117100244 117100244 G A PCSK7 Missense_Mutation p.P106L 0.30 tolerated(0.3) benign(0) TCGA-BR-A44U-01 11 118502879 118502879 G A PHLDB1 Missense_Mutation p.E749K 0.37 deleterious(0) possibly_damaging(0.638) TCGA-BR-A44U-01 11 118938709 118938709 C T VPS11 Silent p.L59L 0.36 TCGA-BR-A44U-01 11 12284158 12284158 G A MICAL2 Intron 0.24 TCGA-BR-A44U-01 11 72421453 72421453 C G ARAP1 Missense_Mutation p.V465L 0.05 deleterious(0.05) benign(0.009) TCGA-BR-A44U-01 12 10233947 10233947 C G CLEC1A Missense_Mutation p.G94R 0.21 deleterious(0.05) benign(0.004) TCGA-BR-A44U-01 12 113328750 113328750 C T RPH3A Missense_Mutation p.R573C 0.25 deleterious(0) probably_damaging(0.999) TCGA-BR-A44U-01 12 55420636 55420636 C T NEUROD4 Missense_Mutation p.A138V 0.27 deleterious(0) probably_damaging(1) TCGA-BR-A44U-01 12 75444552 75444552 G A KCNC2 Silent p.N411N 0.32 TCGA-BR-A44U-01 12 81205323 81205323 C T LIN7A Missense_Mutation p.R208H 0.41 deleterious_low_confidence(0) benign(0.105) TCGA-BR-A44U-01 12 98909788 98909788 G A TMPO Missense_Mutation p.R48H 0.12 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-BR-A44U-01 13 111767941 111767941 C A ARHGEF7 Missense_Mutation p.T23N 0.47 tolerated_low_confidence(0.44) benign(0.111) TCGA-BR-A44U-01 13 19752452 19752452 G A TUBA3C Silent p.Y103Y 0.24 TCGA-BR-A44U-01 13 23906689 23906704 TGCTCCTTAAGACTTT - SACS Frame_Shift_Del p.K3771Yfs*22 0.22 TCGA-BR-A44U-01 13 33016958 33016958 T G N4BP2L2 Silent p.G572G 0.32 TCGA-BR-A44U-01 14 47120473 47120473 T C RPL10L Missense_Mutation p.K156R 0.30 tolerated(0.12) benign(0.274) TCGA-BR-A44U-01 14 77732917 77732917 C T NGB Missense_Mutation p.V140I 0.36 tolerated(0.17) possibly_damaging(0.453) TCGA-BR-A44U-01 15 91488262 91488262 A G UNC45A Missense_Mutation p.N390D 0.32 deleterious(0.04) benign(0.033) TCGA-BR-A44U-01 16 1248716 1248716 G A CACNA1H Missense_Mutation p.V249I 0.31 deleterious(0) probably_damaging(0.997) TCGA-BR-A44U-01 16 20335362 20335362 G A GP2 Missense_Mutation p.S104L 0.38 deleterious(0) benign(0.025) TCGA-BR-A44U-01 16 3079379 3079379 G T CCDC64B Missense_Mutation p.P337T 0.25 tolerated(0.41) benign(0.158) TCGA-BR-A44U-01 16 3080765 3080765 C T CCDC64B Missense_Mutation p.G183R 0.36 deleterious(0.03) possibly_damaging(0.807) TCGA-BR-A44U-01 16 56904589 56904589 G A SLC12A3 Missense_Mutation p.V265M 0.29 tolerated(0.08) possibly_damaging(0.715) TCGA-BR-A44U-01 16 89977665 89977665 G A TCF25 3'UTR 0.23 TCGA-BR-A44U-01 17 27949748 27949748 C T CORO6 5'UTR 0.69 TCGA-BR-A44U-01 17 29508492 29508493 AA - NF1 Frame_Shift_Del p.N214* 0.37 TCGA-BR-A44U-01 17 43924090 43924090 C T SPPL2C Silent p.D606D 0.39 TCGA-BR-A44U-01 17 7147528 7147528 G C CTDNEP1 Missense_Mutation p.N237K 0.56 deleterious_low_confidence(0.03) probably_damaging(0.957) TCGA-BR-A44U-01 17 7577082 7577082 C T TP53 Missense_Mutation p.E286K 0.49 deleterious(0) probably_damaging(0.982) TCGA-BR-A44U-01 17 79910990 79910990 G A NOTUM Silent p.N446N 0.09 TCGA-BR-A44U-01 17 80195301 80195301 G A SLC16A3 Missense_Mutation p.D219N 0.12 deleterious(0.03) probably_damaging(1) TCGA-BR-A44U-01 18 19995683 19995683 C A CTAGE1 Nonsense_Mutation p.G698* 0.48 TCGA-BR-A44U-01 18 21053570 21053570 A G RIOK3 Silent p.K331K 0.32 TCGA-BR-A44U-01 18 22804824 22804824 A C ZNF521 Missense_Mutation p.F1020V 0.42 deleterious(0.01) probably_damaging(0.996) TCGA-BR-A44U-01 18 28649082 28649082 G A DSC2 Silent p.G762G 0.06 TCGA-BR-A44U-01 18 5397266 5397266 C T EPB41L3 Missense_Mutation p.G878R 0.42 tolerated_low_confidence(0.47) benign(0.018) TCGA-BR-A44U-01 18 74091693 74091693 G C ZNF516 Missense_Mutation p.P793A 0.48 tolerated(0.15) benign(0.053) TCGA-BR-A44U-01 19 17836661 17836661 G A MAP1S Silent p.T156T 0.22 TCGA-BR-A44U-01 19 18546941 18546941 C T ISYNA1 Silent p.A292A 0.26 TCGA-BR-A44U-01 19 2422066 2422066 C G TMPRSS9 Missense_Mutation p.P756R 0.35 deleterious(0.03) benign(0.002) TCGA-BR-A44U-01 19 42736836 42736836 T C GSK3A Splice_Site p.X367_splice 0.32 TCGA-BR-A44U-01 19 43098028 43098028 G A CEACAM8 Missense_Mutation p.P30L 0.26 tolerated(0.33) benign(0.203) TCGA-BR-A44U-01 19 51559976 51559976 C T KLK13 Nonsense_Mutation p.W234* 0.26 TCGA-BR-A44U-01 19 5692169 5692171 CTT - LONP1 In_Frame_Del p.K918del 0.30 TCGA-BR-A44U-01 19 6227101 6227101 G A MLLT1 Missense_Mutation p.P145S 0.05 tolerated(0.36) benign(0.119) TCGA-BR-A44U-01 1 111862020 111862020 C T CHIA Silent p.G369G 0.34 TCGA-BR-A44U-01 1 152327441 152327441 T G FLG2 Missense_Mutation p.S941R 0.31 unknown(0) TCGA-BR-A44U-01 1 153723611 153723611 G A INTS3 Missense_Mutation p.V209I 0.11 tolerated(0.07) benign(0.179) TCGA-BR-A44U-01 1 176563946 176563946 T G PAPPA2 Silent p.S402S 0.36 TCGA-BR-A44U-01 1 196342281 196342281 G T KCNT2 Silent p.T464T 0.31 TCGA-BR-A44U-01 1 196695659 196695659 A G CFH Missense_Mutation p.T645A 0.20 tolerated(0.47) benign(0.02) TCGA-BR-A44U-01 1 217622646 217622646 C T GPATCH2 Silent p.T437T 0.30 TCGA-BR-A44U-01 1 228434298 228434298 C T OBSCN Missense_Mutation p.A1368V 0.07 probably_damaging(0.992) TCGA-BR-A44U-01 1 231472437 231472438 TC - EXOC8 Frame_Shift_Del p.D352Lfs*2 0.21 TCGA-BR-A44U-01 1 34090854 34090854 G A CSMD2 Missense_Mutation p.A1726V 0.40 deleterious(0.03) benign(0.38) TCGA-BR-A44U-01 1 70509634 70509634 C T LRRC7 Intron 0.28 TCGA-BR-A44U-01 20 23669411 23669411 G A CST4 Missense_Mutation p.R66C 0.20 deleterious(0.04) possibly_damaging(0.583) TCGA-BR-A44U-01 20 3102959 3102959 A T UBOX5 Missense_Mutation p.V109D 0.18 tolerated(0.19) benign(0.197) TCGA-BR-A44U-01 20 32298497 32298497 C T PXMP4 Missense_Mutation p.R80Q 0.16 tolerated(0.29) benign(0.003) TCGA-BR-A44U-01 20 33588873 33588873 C T MYH7B Missense_Mutation p.T1838M 0.18 probably_damaging(0.999) TCGA-BR-A44U-01 20 42965717 42965717 G T R3HDML 5'UTR 0.19 TCGA-BR-A44U-01 2 121747767 121747767 C T GLI2 Missense_Mutation p.S1426L 0.26 tolerated(0.67) benign(0.038) TCGA-BR-A44U-01 2 141660732 141660732 C G LRP1B Missense_Mutation p.E1175Q 0.25 benign(0.403) TCGA-BR-A44U-01 2 143974011 143974011 T A ARHGAP15 Missense_Mutation p.L98Q 0.21 tolerated(0.15) possibly_damaging(0.487) TCGA-BR-A44U-01 2 149818628 149818628 G A KIF5C Missense_Mutation p.R371K 0.28 deleterious(0.03) benign(0.165) TCGA-BR-A44U-01 2 167284334 167284334 A G SCN7A Silent p.F939F 0.22 TCGA-BR-A44U-01 2 179604547 179604547 C T TTN Missense_Mutation p.M4471I 0.29 TCGA-BR-A44U-01 2 220312960 220312960 G A SPEG Silent p.S360S 0.34 TCGA-BR-A44U-01 2 54128631 54128631 G T PSME4 Missense_Mutation p.D1047E 0.28 tolerated(0.8) benign(0.002) TCGA-BR-A44U-01 3 118644976 118644976 G T IGSF11 Silent p.T184T 0.22 TCGA-BR-A44U-01 3 126194460 126194460 G C ZXDC Missense_Mutation p.H83Q 0.38 tolerated_low_confidence(0.34) benign(0) TCGA-BR-A44U-01 3 185986618 185986618 G A DGKG Missense_Mutation p.A363V 0.30 deleterious(0.01) possibly_damaging(0.827) TCGA-BR-A44U-01 3 49698362 49698362 C T BSN Silent p.P3028P 0.22 TCGA-BR-A44U-01 3 98512522 98512522 G A ST3GAL6 Missense_Mutation p.A305T 0.27 tolerated(0.23) benign(0.067) TCGA-BR-A44U-01 4 1360175 1360175 A C UVSSA Missense_Mutation p.E415A 0.22 deleterious(0) probably_damaging(0.967) TCGA-BR-A44U-01 4 189063413 189063413 C T TRIML1 Missense_Mutation p.T171I 0.33 tolerated(0.68) possibly_damaging(0.735) TCGA-BR-A44U-01 4 40351080 40351080 G A CHRNA9 Missense_Mutation p.V183M 0.33 tolerated(0.17) possibly_damaging(0.649) TCGA-BR-A44U-01 4 87724881 87724881 C T PTPN13 Silent p.N2180N 0.25 TCGA-BR-A44U-01 4 89702371 89702371 C T FAM13A Missense_Mutation p.R468H 0.22 tolerated(0.08) benign(0.049) TCGA-BR-A44U-01 5 140230509 140230509 T - PCDHA9 Intron 0.30 TCGA-BR-A44U-01 5 177666176 177666176 G A COL23A1 Missense_Mutation p.P529L 0.30 tolerated(0.1) possibly_damaging(0.74) TCGA-BR-A44U-01 5 34826448 34826448 C T RAI14 Missense_Mutation p.S891L 0.24 deleterious(0) benign(0.355) TCGA-BR-A44U-01 6 31915251 31915251 C T CFB Missense_Mutation p.T706M 0.21 deleterious(0.03) possibly_damaging(0.729) TCGA-BR-A44U-01 6 32036449 32036449 C T TNXB Missense_Mutation p.A1980T 0.33 benign(0.006) TCGA-BR-A44U-01 6 70065746 70065746 C T BAI3 Nonsense_Mutation p.R1197* 0.32 TCGA-BR-A44U-01 6 72889429 72889429 A C RIMS1 Missense_Mutation p.K208T 0.23 deleterious(0.01) probably_damaging(0.996) TCGA-BR-A44U-01 6 78172243 78172243 C T HTR1B Missense_Mutation p.R293Q 0.27 tolerated(0.06) benign(0.073) TCGA-BR-A44U-01 7 1131745 1131745 C T GPER1 Silent p.A127A 0.35 TCGA-BR-A44U-01 7 116918087 116918087 G A WNT2 3'UTR 0.50 TCGA-BR-A44U-01 7 137531227 137531227 G A DGKI Missense_Mutation p.R128W 0.19 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-BR-A44U-01 7 139416436 139416436 C T HIPK2 Missense_Mutation p.R133H 0.50 deleterious(0) probably_damaging(0.998) TCGA-BR-A44U-01 7 48046774 48046774 C T SUN3 Silent p.P160P 0.35 TCGA-BR-A44U-01 7 72412663 72412663 A G POM121 Missense_Mutation p.T446A 0.33 tolerated(0.15) benign(0.053) TCGA-BR-A44U-01 8 10469501 10469501 G A RP1L1 Nonsense_Mutation p.R703* 0.54 TCGA-BR-A44U-01 8 113694815 113694815 G A CSMD3 Missense_Mutation p.R845W 0.13 deleterious(0) probably_damaging(1) TCGA-BR-A44U-01 8 113702269 113702269 T C CSMD3 Silent p.K661K 0.12 TCGA-BR-A44U-01 8 132051788 132051788 G A ADCY8 Silent p.Y264Y 0.08 TCGA-BR-A44U-01 8 15517052 15517052 C G TUSC3 Missense_Mutation p.P155A 0.06 deleterious(0.01) probably_damaging(0.985) TCGA-BR-A44U-01 8 51465632 51465632 G T SNTG1 Missense_Mutation p.A235S 0.12 tolerated(0.09) possibly_damaging(0.893) TCGA-BR-A44U-01 8 66989069 66989069 C T DNAJC5B Silent p.N98N 0.15 TCGA-BR-A44U-01 8 85441713 85441713 G A RALYL Missense_Mutation p.V66I 0.11 deleterious(0.03) possibly_damaging(0.795) TCGA-BR-A44U-01 9 104238826 104238826 C T TMEM246 Silent p.S183S 0.22 TCGA-BR-A44U-01 9 119033625 119033625 C T PAPPA Silent p.D961D 0.53 TCGA-BR-A44U-01 9 86153105 86153105 G A FRMD3 Silent p.T14T 0.50 TCGA-BR-A44U-01 9 95609552 95609552 G C ZNF484 Missense_Mutation p.T508S 0.18 tolerated(0.47) probably_damaging(0.996) TCGA-BR-A44U-01 X 114468294 114468294 G A LRCH2 Missense_Mutation p.P104L 0.30 deleterious(0) probably_damaging(0.999) TCGA-BR-A44U-01 X 37028307 37028307 G A FAM47C Silent p.P608P 0.62 TCGA-BR-A44U-01 X 47435945 47435945 T C SYN1 Missense_Mutation p.K311R 0.68 deleterious(0) probably_damaging(0.915) TCGA-BR-A44U-01 Y 23562837 23562837 T G RBMY2EP RNA 0.50 TCGA-BR-A452-01 10 118236283 118236283 A C PNLIPRP3 Missense_Mutation p.K431T 0.28 tolerated(0.2) benign(0.05) TCGA-BR-A452-01 10 58120973 58120973 C A ZWINT Nonsense_Mutation p.E9* 0.23 TCGA-BR-A452-01 11 105782751 105782751 A C GRIA4 Intron 0.30 TCGA-BR-A452-01 11 1269369 1269369 G A MUC5B Silent p.V3753V 0.21 TCGA-BR-A452-01 11 1298244 1298244 G A TOLLIP 3'UTR 0.33 TCGA-BR-A452-01 11 20907013 20907013 C T NELL1 Missense_Mutation p.P177L 0.22 deleterious(0.03) benign(0.061) TCGA-BR-A452-01 11 26692582 26692582 A T SLC5A12 3'UTR 0.34 TCGA-BR-A452-01 11 27680025 27680025 T G BDNF Missense_Mutation p.Q111H 0.41 tolerated(0.07) possibly_damaging(0.46) TCGA-BR-A452-01 11 31625310 31625310 A G ELP4 Intron 0.18 TCGA-BR-A452-01 11 4928970 4928970 T G OR51A7 Missense_Mutation p.L124R 0.30 deleterious(0.01) benign(0.072) TCGA-BR-A452-01 11 56237885 56237885 A G OR5M3 Missense_Mutation p.L30P 0.30 deleterious(0) probably_damaging(0.966) TCGA-BR-A452-01 11 66236332 66236332 G A PELI3 Missense_Mutation p.E61K 0.64 tolerated_low_confidence(0.67) benign(0.005) TCGA-BR-A452-01 11 7022511 7022511 T G ZNF214 Missense_Mutation p.N135H 0.36 tolerated(0.07) benign(0.191) TCGA-BR-A452-01 11 71820914 71820914 C T ANAPC15 3'UTR 0.13 TCGA-BR-A452-01 11 71820961 71820961 C T ANAPC15 Missense_Mutation p.G111D 0.13 deleterious_low_confidence(0) possibly_damaging(0.89) TCGA-BR-A452-01 11 73829385 73829385 C T C2CD3 Missense_Mutation p.D470N 0.12 tolerated(0.11) benign(0.024) TCGA-BR-A452-01 11 764872 764872 C G TALDO1 3'UTR 0.12 TCGA-BR-A452-01 11 92086977 92086977 C T FAT3 Nonsense_Mutation p.R567* 0.29 TCGA-BR-A452-01 12 123810084 123810084 G A SBNO1 Silent p.G646G 0.61 TCGA-BR-A452-01 12 125473527 125473527 C G DHX37 Missense_Mutation p.Q14H 0.56 deleterious(0.04) benign(0.216) TCGA-BR-A452-01 12 40223997 40223997 G A SLC2A13 Silent p.C451C 0.27 TCGA-BR-A452-01 12 57115218 57115218 C G NACA Missense_Mutation p.L32F 0.42 deleterious_low_confidence(0) possibly_damaging(0.765) TCGA-BR-A452-01 12 6953130 6953130 C G GNB3 Missense_Mutation p.I229M 0.18 deleterious(0) probably_damaging(0.948) TCGA-BR-A452-01 12 81242079 81242079 G A LIN7A Missense_Mutation p.T75M 0.26 deleterious(0) probably_damaging(0.981) TCGA-BR-A452-01 12 9315222 9315222 T G PZP Missense_Mutation p.K920T 0.27 tolerated(0.69) benign(0.309) TCGA-BR-A452-01 13 48937043 48937046 ACAA - RB1 Frame_Shift_Del p.T271Efs*14 0.41 TCGA-BR-A452-01 14 39716682 39716682 C T MIA2 Missense_Mutation p.P302S 0.17 tolerated(0.46) benign(0.017) TCGA-BR-A452-01 15 40914809 40914809 G C CASC5 Missense_Mutation p.G809R 0.11 deleterious(0.03) possibly_damaging(0.822) TCGA-BR-A452-01 15 76467994 76467994 G A C15orf27 Silent p.T249T 0.24 TCGA-BR-A452-01 15 90258251 90258251 G A WDR93 Silent p.K227K 0.45 TCGA-BR-A452-01 16 20998758 20998759 - T DNAH3 Frame_Shift_Ins p.C2299Mfs*8 0.34 TCGA-BR-A452-01 16 239282 239282 C T LUC7L Missense_Mutation p.R344Q 0.49 deleterious_low_confidence(0.01) unknown(0) TCGA-BR-A452-01 16 30779227 30779227 G A RNF40 Missense_Mutation p.R481H 0.26 tolerated(0.06) possibly_damaging(0.779) TCGA-BR-A452-01 16 57685210 57685210 C T GPR56 Missense_Mutation p.R55C 0.30 tolerated(0.08) possibly_damaging(0.586) TCGA-BR-A452-01 17 14140016 14140016 G A CDRT15 Silent p.I45I 0.12 TCGA-BR-A452-01 17 34072128 34072128 G A GAS2L2 Silent p.P796P 0.06 TCGA-BR-A452-01 17 39394378 39394378 C G KRTAP9-8 Silent p.T25T 0.42 TCGA-BR-A452-01 17 7578403 7578403 C A TP53 Missense_Mutation p.C176F 0.55 deleterious(0) probably_damaging(0.993) TCGA-BR-A452-01 18 14542958 14542958 T A POTEC Missense_Mutation p.K63M 0.17 deleterious_low_confidence(0) possibly_damaging(0.781) TCGA-BR-A452-01 19 17450362 17450362 G A GTPBP3 Missense_Mutation p.G342S 0.24 tolerated(0.63) benign(0.053) TCGA-BR-A452-01 19 21719186 21719186 T G ZNF429 Missense_Mutation p.L111V 0.34 deleterious(0.04) possibly_damaging(0.887) TCGA-BR-A452-01 19 21719296 21719297 - TA ZNF429 Frame_Shift_Ins p.D148* 0.15 TCGA-BR-A452-01 19 21719297 21719297 G T ZNF429 Missense_Mutation p.D148Y 0.25 tolerated(0.11) probably_damaging(0.996) TCGA-BR-A452-01 19 4325405 4325405 C A STAP2 Nonsense_Mutation p.E323* 0.34 TCGA-BR-A452-01 19 46857240 46857240 C T PPP5C Silent p.Y119Y 0.12 TCGA-BR-A452-01 19 48878949 48878949 C T SYNGR4 Silent p.L137L 0.22 TCGA-BR-A452-01 19 48879451 48879451 C T SYNGR4 Missense_Mutation p.S194F 0.22 deleterious(0.01) benign(0.405) TCGA-BR-A452-01 19 4947120 4947120 C G UHRF1 RNA 0.15 TCGA-BR-A452-01 19 49589818 49589818 G - SNRNP70 Frame_Shift_Del 0.24 TCGA-BR-A452-01 19 53015497 53015497 A T ZNF578 3'Flank 0.26 TCGA-BR-A452-01 19 7585158 7585158 G A ZNF358 Missense_Mutation p.E344K 0.32 deleterious(0.02) probably_damaging(0.997) TCGA-BR-A452-01 1 145299728 145299729 AG - NBPF10 Splice_Site p.X260_splice 0.09 TCGA-BR-A452-01 1 145537786 145537786 G A ITGA10 Missense_Mutation p.R875Q 0.33 tolerated(0.21) benign(0.023) TCGA-BR-A452-01 1 151374413 151374413 C T PSMB4 3'UTR 0.30 TCGA-BR-A452-01 1 152800031 152800031 A C LCE1A Missense_Mutation p.K28T 0.24 deleterious_low_confidence(0) unknown(0) TCGA-BR-A452-01 1 158654936 158654936 A G SPTA1 Silent p.L76L 0.19 TCGA-BR-A452-01 1 176668606 176668606 G A PAPPA2 Silent p.Q1039Q 0.19 TCGA-BR-A452-01 1 176992545 176992545 T C ASTN1 Missense_Mutation p.E478G 0.57 deleterious(0) benign(0.202) TCGA-BR-A452-01 1 196309524 196309524 G A KCNT2 Missense_Mutation p.S577L 0.47 tolerated(0.1) benign(0.002) TCGA-BR-A452-01 1 228432100 228432100 G A OBSCN Silent p.T1195T 0.24 TCGA-BR-A452-01 1 228526004 228526004 G - OBSCN Frame_Shift_Del p.A6631Pfs*21 0.58 TCGA-BR-A452-01 1 241797705 241797705 G C CHML Missense_Mutation p.S455C 0.19 deleterious(0) probably_damaging(0.999) TCGA-BR-A452-01 1 248551519 248551519 G A OR2T6 Missense_Mutation p.V204I 0.48 tolerated(0.22) benign(0.182) TCGA-BR-A452-01 1 25712312 25712312 C T RHCE Silent p.G321G 0.25 TCGA-BR-A452-01 1 70503883 70503883 T C LRRC7 Silent p.R754R 0.15 TCGA-BR-A452-01 1 75680342 75680342 A C SLC44A5 Missense_Mutation p.F584V 0.23 deleterious(0) probably_damaging(1) TCGA-BR-A452-01 1 86241374 86241374 C T COL24A1 Missense_Mutation p.G1453S 0.26 deleterious(0.01) probably_damaging(0.95) TCGA-BR-A452-01 20 42199271 42199271 G A SGK2 Silent p.L185L 0.16 TCGA-BR-A452-01 20 47712900 47712900 G A CSE1L Silent p.V947V 0.30 TCGA-BR-A452-01 20 60776180 60776180 G A MTG2 3'UTR 0.24 TCGA-BR-A452-01 21 22696742 22696742 C T NCAM2 Missense_Mutation p.A220V 0.42 deleterious(0) possibly_damaging(0.901) TCGA-BR-A452-01 21 32624209 32624209 C T TIAM1 Silent p.P420P 0.60 TCGA-BR-A452-01 21 40649222 40649223 - A BRWD1 Frame_Shift_Ins p.L353Ffs*4 0.34 TCGA-BR-A452-01 22 17072615 17072615 G T CCT8L2 Missense_Mutation p.Q276K 0.23 tolerated(0.33) benign(0.022) TCGA-BR-A452-01 22 19709185 19709185 T C SEPT5 Missense_Mutation p.I247T 0.32 deleterious(0) probably_damaging(0.999) TCGA-BR-A452-01 2 153573873 153573873 G T PRPF40A Silent p.L27L 0.26 TCGA-BR-A452-01 2 1648500 1648500 G A PXDN Silent p.I1211I 0.40 TCGA-BR-A452-01 2 178980994 178980994 C - RBM45 Frame_Shift_Del p.F102Lfs*25 0.17 TCGA-BR-A452-01 2 179449931 179449931 C G TTN Missense_Mutation p.A21514P 0.22 TCGA-BR-A452-01 2 179485111 179485111 T C TTN Silent p.K15379K 0.34 TCGA-BR-A452-01 2 179595319 179595319 G T TTN Missense_Mutation p.L5981M 0.35 TCGA-BR-A452-01 2 179632580 179632580 T G TTN Missense_Mutation p.K3126T 0.29 TCGA-BR-A452-01 2 21226009 21226009 G A APOB Silent p.L4095L 0.24 TCGA-BR-A452-01 2 219339499 219339499 C G USP37 Missense_Mutation p.R718T 0.21 tolerated(0.16) benign(0.122) TCGA-BR-A452-01 2 223161818 223161818 A G PAX3 Missense_Mutation p.I67T 0.35 deleterious(0) possibly_damaging(0.546) TCGA-BR-A452-01 2 237489897 237489897 C G ACKR3 Silent p.V263V 0.28 TCGA-BR-A452-01 2 239161846 239161846 C G PER2 Missense_Mutation p.E940Q 0.31 tolerated(0.97) benign(0.401) TCGA-BR-A452-01 2 24253804 24253804 C G C2orf44 Nonstop_Mutation p.*722Sext*21 0.33 TCGA-BR-A452-01 2 89246825 89246825 A C IGKV1-5 Missense_Mutation p.S115R 0.20 deleterious(0.02) benign(0.045) TCGA-BR-A452-01 3 113595064 113595064 G T GRAMD1C Missense_Mutation p.R139L 0.28 deleterious(0) possibly_damaging(0.762) TCGA-BR-A452-01 3 133494371 133494371 G A TF Silent p.A594A 0.27 TCGA-BR-A452-01 3 134226057 134226057 G A CEP63 Missense_Mutation p.E51K 0.24 tolerated(0.08) possibly_damaging(0.868) TCGA-BR-A452-01 3 153847444 153847444 A C ARHGEF26 Missense_Mutation p.K402T 0.41 deleterious(0.03) possibly_damaging(0.772) TCGA-BR-A452-01 3 171455827 171455827 G A PLD1 Silent p.N5N 0.35 TCGA-BR-A452-01 3 28562499 28562499 A C ZCWPW2 Missense_Mutation p.E267D 0.29 deleterious(0.03) possibly_damaging(0.628) TCGA-BR-A452-01 3 43121515 43121515 C T POMGNT2 Missense_Mutation p.G470E 0.35 tolerated(0.78) benign(0.075) TCGA-BR-A452-01 3 51981840 51981840 C T PARP3 Missense_Mutation p.T461M 0.13 tolerated(0.13) benign(0.008) TCGA-BR-A452-01 3 86996204 86996204 T C VGLL3 Silent p.Q317Q 0.25 TCGA-BR-A452-01 3 99514979 99514979 A G COL8A1 Silent p.%3D 0.36 TCGA-BR-A452-01 4 134071772 134071772 C T PCDH10 Silent p.Y159Y 0.42 TCGA-BR-A452-01 4 144106705 144106705 C G USP38 Missense_Mutation p.D34E 0.40 tolerated(0.36) benign(0.031) TCGA-BR-A452-01 4 85661406 85661406 G A WDFY3 Missense_Mutation p.P2133L 0.41 deleterious(0) possibly_damaging(0.459) TCGA-BR-A452-01 5 112111436 112111436 T G APC Splice_Site p.X177_splice 0.49 TCGA-BR-A452-01 5 140257073 140257073 C T PCDHA12 Silent p.N672N 0.42 TCGA-BR-A452-01 5 151179475 151179475 C G G3BP1 Missense_Mutation p.S290C 0.25 deleterious(0.04) benign(0.436) TCGA-BR-A452-01 5 179290809 179290809 C - TBC1D9B Frame_Shift_Del p.G1131Afs*78 0.12 TCGA-BR-A452-01 5 54327247 54327247 A C GZMK Missense_Mutation p.K140T 0.41 tolerated(0.34) possibly_damaging(0.788) TCGA-BR-A452-01 6 112454672 112454672 A C LAMA4 Missense_Mutation p.L1192R 0.16 deleterious(0) probably_damaging(1) TCGA-BR-A452-01 6 130762633 130762633 T A TMEM200A Missense_Mutation p.S356T 0.32 tolerated(0.64) benign(0.024) TCGA-BR-A452-01 6 152804233 152804233 A C SYNE1 Missense_Mutation p.L446R 0.33 benign(0.007) TCGA-BR-A452-01 6 169623561 169623561 C T THBS2 Missense_Mutation p.R928Q 0.40 tolerated(0.13) probably_damaging(0.999) TCGA-BR-A452-01 6 3850759 3850759 C T FAM50B Silent p.I238I 0.36 TCGA-BR-A452-01 6 55620273 55620273 T G BMP5 3'UTR 0.35 TCGA-BR-A452-01 6 6318886 6318886 A C F13A1 Silent p.T4T 0.25 TCGA-BR-A452-01 6 76751661 76751661 C T IMPG1 Missense_Mutation p.E84K 0.34 deleterious(0) possibly_damaging(0.804) TCGA-BR-A452-01 7 107704215 107704215 T C LAMB4 Missense_Mutation p.T1018A 0.30 tolerated(0.07) benign(0.438) TCGA-BR-A452-01 7 148702994 148702994 C G PDIA4 Missense_Mutation p.R428T 0.31 deleterious(0.01) possibly_damaging(0.711) TCGA-BR-A452-01 7 44869633 44869633 C T H2AFV 3'Flank 0.53 TCGA-BR-A452-01 7 53104250 53104250 T C POM121L12 Missense_Mutation p.S296P 0.38 deleterious_low_confidence(0) possibly_damaging(0.82) TCGA-BR-A452-01 7 63529967 63529967 A C ZNF727 Missense_Mutation p.K69T 0.20 deleterious(0.01) benign(0.01) TCGA-BR-A452-01 7 75687381 75687381 C T MDH2 Silent p.C138C 0.38 TCGA-BR-A452-01 7 82544694 82544694 A C PCLO Missense_Mutation p.F4203C 0.26 unknown(0) TCGA-BR-A452-01 8 101252666 101252666 A C SPAG1 Silent p.A772A 0.40 TCGA-BR-A452-01 8 10465067 10465067 C G RP1L1 Missense_Mutation p.E2181Q 0.43 unknown(0) TCGA-BR-A452-01 8 105361304 105361304 T C DCSTAMP Missense_Mutation p.L175P 0.35 deleterious(0.03) benign(0.058) TCGA-BR-A452-01 8 114111124 114111124 C G CSMD3 Missense_Mutation p.E260Q 0.30 tolerated(0.15) possibly_damaging(0.653) TCGA-BR-A452-01 8 144941839 144941839 G A EPPK1 Silent p.N1861N 0.09 TCGA-BR-A452-01 8 145666384 145666384 C G TONSL Missense_Mutation p.D326H 0.19 tolerated(0.15) benign(0.172) TCGA-BR-A452-01 8 69552690 69552690 T G C8orf34 Silent p.T395T 0.20 TCGA-BR-A452-01 8 87588309 87588309 T C CNGB3 Missense_Mutation p.D718G 0.43 tolerated(0.36) benign(0.015) TCGA-BR-A452-01 9 108358939 108358939 G A FKTN Splice_Site p.X55_splice 0.31 TCGA-BR-A452-01 9 111870817 111870817 C A TMEM245 Missense_Mutation p.V205F 0.29 deleterious(0) possibly_damaging(0.887) TCGA-BR-A452-01 9 130630175 130630175 C G AK1 3'UTR 0.19 TCGA-BR-A452-01 9 131262403 131262403 G A ODF2 Missense_Mutation p.E787K 0.23 deleterious(0.02) probably_damaging(0.913) TCGA-BR-A452-01 9 136405731 136405731 C T ADAMTSL2 Missense_Mutation p.H142Y 0.22 deleterious(0.01) probably_damaging(0.922) TCGA-BR-A452-01 9 84609013 84609013 T G SPATA31D1 Missense_Mutation p.L1210V 0.33 deleterious(0.04) possibly_damaging(0.481) TCGA-BR-A452-01 X 120009063 120009063 C A CT47B1 Silent p.G154G 0.11 TCGA-BR-A452-01 X 15365304 15365304 A G FIGF Missense_Mutation p.F307S 0.37 deleterious(0) possibly_damaging(0.883) TCGA-BR-A452-01 X 31496452 31496452 A C DMD Missense_Mutation p.L2903R 0.59 possibly_damaging(0.883) TCGA-BR-A452-01 X 5821801 5821801 G T NLGN4X Nonsense_Mutation p.C306* 0.19 TCGA-BR-A453-01 10 106159127 106159127 C A CCDC147 Missense_Mutation p.Q562K 0.14 tolerated(0.94) benign(0.009) TCGA-BR-A453-01 10 25886899 25886899 G A GPR158 Missense_Mutation p.A782T 0.06 tolerated(0.78) benign(0.002) TCGA-BR-A453-01 10 88213535 88213535 C T WAPAL Missense_Mutation p.S904N 0.06 tolerated(0.31) benign(0.428) TCGA-BR-A453-01 11 20113856 20113856 G T NAV2 Silent p.P1978P 0.05 TCGA-BR-A453-01 11 45949117 45949117 C A GYLTL1B Missense_Mutation p.P526H 0.06 deleterious(0) probably_damaging(1) TCGA-BR-A453-01 11 59420345 59420345 C A PATL1 Missense_Mutation p.S423I 0.06 deleterious(0) probably_damaging(0.99) TCGA-BR-A453-01 12 53169377 53169377 G T KRT76 Missense_Mutation p.L204M 0.07 deleterious(0) probably_damaging(1) TCGA-BR-A453-01 12 56221057 56221057 G T DNAJC14 Silent p.A462A 0.04 TCGA-BR-A453-01 12 56847476 56847476 C T MIP Missense_Mutation p.V142M 0.09 deleterious(0) probably_damaging(0.977) TCGA-BR-A453-01 12 70956659 70956659 T A PTPRB Missense_Mutation p.E1378V 0.13 deleterious(0.03) possibly_damaging(0.541) TCGA-BR-A453-01 12 81741521 81741521 C T PPFIA2 Missense_Mutation p.E675K 0.06 deleterious(0) probably_damaging(0.986) TCGA-BR-A453-01 13 39263660 39263660 C T FREM2 Missense_Mutation p.R727C 0.06 tolerated(0.14) benign(0.007) TCGA-BR-A453-01 14 76118161 76118161 C T C14orf1 Missense_Mutation p.G99E 0.07 tolerated(0.19) benign(0.006) TCGA-BR-A453-01 15 34078174 34078174 C T RYR3 Missense_Mutation p.R3194C 0.06 probably_damaging(0.991) TCGA-BR-A453-01 15 73616535 73616535 G A HCN4 Missense_Mutation p.R680C 0.06 deleterious(0) unknown(0) TCGA-BR-A453-01 16 1537353 1537353 G T PTX4 Silent p.R249R 0.07 TCGA-BR-A453-01 16 55363168 55363168 G A IRX6 Silent p.P426P 0.09 TCGA-BR-A453-01 16 67986303 67986303 A G SLC12A4 Missense_Mutation p.I236T 0.06 deleterious(0) possibly_damaging(0.823) TCGA-BR-A453-01 16 68847398 68847398 G T CDH1 Missense_Mutation p.K440N 0.08 deleterious(0) probably_damaging(0.995) TCGA-BR-A453-01 17 26961821 26961821 G A KIAA0100 Silent p.A928A 0.03 TCGA-BR-A453-01 17 58262911 58262911 T C USP32 Silent p.L1248L 0.05 TCGA-BR-A453-01 17 62856783 62856783 G T LRRC37A3 Silent p.R1161R 0.04 TCGA-BR-A453-01 17 7646393 7646393 C T DNAH2 Missense_Mutation p.R613W 0.09 probably_damaging(0.953) TCGA-BR-A453-01 17 8243564 8243564 G A ODF4 Silent p.P65P 0.13 TCGA-BR-A453-01 17 8706636 8706636 C T PIK3R6 Silent p.K739K 0.07 TCGA-BR-A453-01 18 56246747 56246747 C T ALPK2 Missense_Mutation p.G421S 0.06 tolerated(1) benign(0.001) TCGA-BR-A453-01 18 59221602 59221602 G T CDH20 Missense_Mutation p.A694S 0.05 tolerated(0.72) benign(0.006) TCGA-BR-A453-01 18 77456043 77456043 C T CTDP1 Silent p.S155S 0.16 TCGA-BR-A453-01 19 12384413 12384413 G A ZNF44 Silent p.H267H 0.06 TCGA-BR-A453-01 19 58058384 58058384 G A ZNF550 Missense_Mutation p.R369C 0.06 deleterious(0.01) probably_damaging(0.998) TCGA-BR-A453-01 19 8668717 8668717 C A ADAMTS10 Missense_Mutation p.G163C 0.06 tolerated(0.06) possibly_damaging(0.882) TCGA-BR-A453-01 1 109538366 109538366 G T WDR47 Silent p.G517G 0.05 TCGA-BR-A453-01 1 154474183 154474183 C T SHE Missense_Mutation p.S107N 0.20 tolerated(0.26) benign(0.006) TCGA-BR-A453-01 1 198676006 198676006 A T PTPRC Nonsense_Mutation p.K277* 0.10 TCGA-BR-A453-01 1 2082347 2082347 T C PRKCZ Missense_Mutation p.V269A 0.07 tolerated(0.21) possibly_damaging(0.891) TCGA-BR-A453-01 1 210008472 210008472 T A DIEXF Silent p.A205A 0.06 TCGA-BR-A453-01 1 27057730 27057730 C T ARID1A Nonsense_Mutation p.Q480* 0.07 TCGA-BR-A453-01 1 38155399 38155399 C T C1orf109 Missense_Mutation p.A52T 0.07 tolerated(0.39) benign(0.02) TCGA-BR-A453-01 1 55619860 55619860 C A USP24 Missense_Mutation p.D582Y 0.14 tolerated(0.1) benign(0.027) TCGA-BR-A453-01 1 75009634 75009634 C T TNNI3K Nonsense_Mutation p.R927* 0.09 TCGA-BR-A453-01 20 34243149 34243149 G A RBM12 Silent p.G32G 0.09 TCGA-BR-A453-01 20 40084457 40084457 C A CHD6 Missense_Mutation p.G998W 0.05 deleterious(0) probably_damaging(1) TCGA-BR-A453-01 21 31691948 31691948 C A KRTAP26-1 Nonsense_Mutation p.G136* 0.04 TCGA-BR-A453-01 21 46875460 46875460 T C COL18A1 Missense_Mutation p.C6R 0.05 unknown(0) TCGA-BR-A453-01 22 43195060 43195060 G A ARFGAP3 Silent p.V506V 0.07 TCGA-BR-A453-01 22 50900900 50900900 C T SBF1 Silent p.E710E 0.06 TCGA-BR-A453-01 2 102955296 102955296 G A IL1RL1 Splice_Site p.X21_splice 0.07 TCGA-BR-A453-01 2 128377979 128377979 C T MYO7B Missense_Mutation p.R1129W 0.12 deleterious(0) probably_damaging(1) TCGA-BR-A453-01 2 179395780 179395780 T A TTN Missense_Mutation p.I35188F 0.05 TCGA-BR-A453-01 2 20455840 20455840 A G PUM2 Missense_Mutation p.V859A 0.04 deleterious(0.03) probably_damaging(0.999) TCGA-BR-A453-01 2 234669274 234669274 A T UGT1A8 Intron 0.05 TCGA-BR-A453-01 2 3341900 3341900 G A TSSC1 Silent p.D49D 0.07 TCGA-BR-A453-01 3 125250772 125250772 T C OSBPL11 Missense_Mutation p.Q704R 0.05 deleterious(0) possibly_damaging(0.633) TCGA-BR-A453-01 3 178962330 178962330 T C KCNMB3 Missense_Mutation p.K138E 0.10 tolerated(0.29) benign(0.137) TCGA-BR-A453-01 3 18390940 18390940 C T SATB1 Missense_Mutation p.E704K 0.13 deleterious(0) probably_damaging(0.99) TCGA-BR-A453-01 3 195295971 195295971 C T APOD Missense_Mutation p.D124N 0.06 deleterious(0.03) probably_damaging(1) TCGA-BR-A453-01 3 30713916 30713916 C A TGFBR2 Missense_Mutation p.A439D 0.04 deleterious(0) probably_damaging(1) TCGA-BR-A453-01 4 177073081 177073081 T A WDR17 Missense_Mutation p.I832N 0.07 deleterious(0) possibly_damaging(0.795) TCGA-BR-A453-01 4 81188284 81188284 G T FGF5 Missense_Mutation p.Q102H 0.09 deleterious(0.02) benign(0.211) TCGA-BR-A453-01 5 115782630 115782630 C T SEMA6A Silent p.S924S 0.06 TCGA-BR-A453-01 5 121759300 121759300 G A SNCAIP Missense_Mutation p.A290T 0.07 tolerated(0.6) benign(0.002) TCGA-BR-A453-01 5 140215247 140215247 G A PCDHA7 Missense_Mutation p.A427T 0.06 deleterious_low_confidence(0.02) possibly_damaging(0.59) TCGA-BR-A453-01 5 140572186 140572186 T G PCDHB10 Missense_Mutation p.W21G 0.10 deleterious_low_confidence(0.05) benign(0) TCGA-BR-A453-01 5 2752823 2752823 C T C5orf38 Silent p.N96N 0.04 TCGA-BR-A453-01 5 71491474 71491474 G T MAP1B Missense_Mutation p.E764D 0.04 unknown(0) TCGA-BR-A453-01 5 7784525 7784525 C A ADCY2 Missense_Mutation p.S811Y 0.05 deleterious(0.01) benign(0.092) TCGA-BR-A453-01 6 16328059 16328059 C T ATXN1 Silent p.S161S 0.05 TCGA-BR-A453-01 6 31691520 31691520 C A C6orf25 Missense_Mutation p.L56M 0.09 deleterious_low_confidence(0) probably_damaging(1) TCGA-BR-A453-01 6 32188872 32188872 C T NOTCH4 Missense_Mutation p.G228S 0.06 deleterious(0.01) benign(0.364) TCGA-BR-A453-01 6 33283022 33283022 G A ZBTB22 Missense_Mutation p.R558C 0.05 deleterious(0) probably_damaging(0.998) TCGA-BR-A453-01 7 143747810 143747810 G T OR2A5 Missense_Mutation p.A106S 0.10 tolerated(0.35) benign(0.057) TCGA-BR-A453-01 7 149461947 149461947 G A ZNF467 Silent p.C548C 0.13 TCGA-BR-A453-01 7 38289149 38289149 G A TRGC2 Missense_Mutation p.S9F 0.04 tolerated(0.12) probably_damaging(0.947) TCGA-BR-A453-01 7 55220294 55220294 C T EGFR Silent p.P228P 0.04 TCGA-BR-A453-01 7 6189448 6189448 C A USP42 Missense_Mutation p.L541I 0.05 tolerated(0.1) possibly_damaging(0.772) TCGA-BR-A453-01 7 7484115 7484115 C T COL28A1 Silent p.E505E 0.11 TCGA-BR-A453-01 8 11302042 11302042 C T FAM167A 5'UTR 0.11 TCGA-BR-A453-01 8 12973125 12973125 C T DLC1 Missense_Mutation p.G464S 0.07 deleterious(0) probably_damaging(1) TCGA-BR-A453-01 8 13357061 13357061 G A DLC1 Silent p.L174L 0.05 TCGA-BR-A453-01 9 136597555 136597555 C T SARDH Missense_Mutation p.R167K 0.06 deleterious(0.04) possibly_damaging(0.9) TCGA-BR-A453-01 9 139925278 139925278 G T FUT7 Missense_Mutation p.L305I 0.09 tolerated(0.34) benign(0.102) TCGA-BR-A453-01 9 35679303 35679303 T C CA9 Silent p.T343T 0.05 TCGA-BR-A453-01 9 93983132 93983132 C T AUH Silent p.A266A 0.07 TCGA-BR-A453-01 9 99266039 99266039 C T CDC14B Missense_Mutation p.R498H 0.08 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-BR-A453-01 X 125686436 125686436 C T DCAF12L1 Silent p.A52A 0.07 TCGA-BR-A453-01 X 150912737 150912737 G A CNGA2 Missense_Mutation p.E588K 0.06 tolerated(0.85) benign(0) TCGA-BR-A4CQ-01 10 100481490 100481490 G A HPSE2 Missense_Mutation p.R294W 0.31 deleterious(0) probably_damaging(1) TCGA-BR-A4CQ-01 10 102051174 102051174 C T PKD2L1 Missense_Mutation p.A631T 0.14 tolerated(0.94) benign(0.003) TCGA-BR-A4CQ-01 10 105200216 105200216 G A PDCD11 Missense_Mutation p.E1440K 0.40 tolerated(0.43) benign(0.002) TCGA-BR-A4CQ-01 10 114194103 114194103 A T ZDHHC6 Missense_Mutation p.D285E 0.19 tolerated(0.05) benign(0.287) TCGA-BR-A4CQ-01 10 15120493 15120493 A C ACBD7 3'UTR 0.24 TCGA-BR-A4CQ-01 10 24820922 24820922 G T KIAA1217 Missense_Mutation p.K1082N 0.29 deleterious(0) probably_damaging(0.999) TCGA-BR-A4CQ-01 10 45430339 45430339 G T TMEM72 Missense_Mutation p.K195N 0.06 tolerated(0.31) benign(0.019) TCGA-BR-A4CQ-01 10 87407307 87407307 C T GRID1 Intron 0.27 TCGA-BR-A4CQ-01 11 108199886 108199886 T C ATM Missense_Mutation p.F2410L 0.64 deleterious(0.01) probably_damaging(0.996) TCGA-BR-A4CQ-01 11 108256664 108256664 G T C11orf65 Missense_Mutation p.S257Y 0.05 deleterious(0) probably_damaging(0.994) TCGA-BR-A4CQ-01 11 120180168 120180168 T C POU2F3 Missense_Mutation p.I316T 0.69 deleterious(0) probably_damaging(0.974) TCGA-BR-A4CQ-01 11 12525930 12525930 C G PARVA Missense_Mutation p.P244R 0.09 deleterious(0.03) possibly_damaging(0.517) TCGA-BR-A4CQ-01 11 31824271 31824271 T A PAX6 Missense_Mutation p.D41V 0.08 tolerated(0.09) probably_damaging(0.999) TCGA-BR-A4CQ-01 11 33566800 33566800 G T KIAA1549L Missense_Mutation p.L790F 0.05 tolerated(0.09) benign(0.393) TCGA-BR-A4CQ-01 11 59224503 59224503 G C OR4D6 Missense_Mutation p.E24Q 0.11 tolerated(1) probably_damaging(0.996) TCGA-BR-A4CQ-01 11 64416246 64416246 G A NRXN2 Silent p.D1081D 0.13 TCGA-BR-A4CQ-01 11 65144451 65144451 C T SLC25A45 Missense_Mutation p.G146R 0.10 deleterious(0) probably_damaging(1) TCGA-BR-A4CQ-01 11 66392900 66392900 C G RBM14 Missense_Mutation p.T518S 0.05 tolerated(0.22) unknown(0) TCGA-BR-A4CQ-01 11 67223873 67223873 G C CABP4 Missense_Mutation p.E167D 0.07 deleterious(0) possibly_damaging(0.575) TCGA-BR-A4CQ-01 11 71954983 71954983 G A PHOX2A Silent p.G22G 0.21 TCGA-BR-A4CQ-01 11 77775372 77775372 T G THRSP 3'UTR 0.41 TCGA-BR-A4CQ-01 12 100813978 100813978 A T SLC17A8 3'UTR 0.29 TCGA-BR-A4CQ-01 12 125396700 125396700 G C UBC Missense_Mutation p.L540V 0.40 deleterious(0.04) possibly_damaging(0.519) TCGA-BR-A4CQ-01 12 125396928 125396928 G C UBC Missense_Mutation p.L464V 0.23 tolerated(0.08) probably_damaging(0.989) TCGA-BR-A4CQ-01 12 132479416 132479416 C T EP400 Silent p.D914D 0.05 TCGA-BR-A4CQ-01 12 25398285 25398285 C T KRAS Missense_Mutation p.G12S 0.55 deleterious(0.03) possibly_damaging(0.644) TCGA-BR-A4CQ-01 12 52627391 52627391 C G KRT7 Missense_Mutation p.S104C 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-BR-A4CQ-01 12 57870956 57870956 C T ARHGAP9 Missense_Mutation p.E285K 0.55 tolerated(0.13) benign(0.318) TCGA-BR-A4CQ-01 12 64816815 64816815 A G XPOT Missense_Mutation p.N371D 0.22 tolerated(0.3) benign(0.094) TCGA-BR-A4CQ-01 12 6687229 6687229 G A CHD4 Missense_Mutation p.R1732W 0.35 deleterious(0) probably_damaging(0.997) TCGA-BR-A4CQ-01 12 69140018 69140018 C G SLC35E3 5'UTR 0.41 TCGA-BR-A4CQ-01 12 72372834 72372834 G A TPH2 Missense_Mutation p.R303Q 0.25 deleterious(0.03) probably_damaging(1) TCGA-BR-A4CQ-01 12 81768413 81768413 C T PPFIA2 Silent p.K422K 0.14 TCGA-BR-A4CQ-01 13 114542799 114542799 T - GAS6 Frame_Shift_Del p.N123Tfs*76 0.37 TCGA-BR-A4CQ-01 13 25440297 25440297 C T RNF17 Missense_Mutation p.H1373Y 0.24 tolerated(1) benign(0) TCGA-BR-A4CQ-01 13 26343356 26343356 G A ATP8A2 Missense_Mutation p.A853T 0.50 deleterious(0) possibly_damaging(0.793) TCGA-BR-A4CQ-01 13 27216523 27216523 G T WASF3 Missense_Mutation p.R39L 0.10 deleterious(0.03) benign(0.225) TCGA-BR-A4CQ-01 13 46718575 46718575 A T LCP1 Splice_Site p.X418_splice 0.77 TCGA-BR-A4CQ-01 13 53421450 53421450 G A PCDH8 Silent p.A374A 0.27 TCGA-BR-A4CQ-01 13 78492684 78492684 C T EDNRB Missense_Mutation p.G99R 0.03 tolerated_low_confidence(0.33) benign(0.021) TCGA-BR-A4CQ-01 14 23518308 23518308 C T CDH24 Missense_Mutation p.A630T 0.12 deleterious(0.01) benign(0.009) TCGA-BR-A4CQ-01 14 34270262 34270262 G A NPAS3 Missense_Mutation p.V917I 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.854) TCGA-BR-A4CQ-01 14 89130844 89130844 A G EML5 Silent p.D1134D 0.09 TCGA-BR-A4CQ-01 14 91937312 91937312 G A SMEK1 Missense_Mutation p.A497V 0.46 deleterious(0.01) possibly_damaging(0.558) TCGA-BR-A4CQ-01 14 92170986 92170986 A G CATSPERB Missense_Mutation p.Y176H 0.05 tolerated(0.28) benign(0.01) TCGA-BR-A4CQ-01 14 94063796 94063796 C T UNC79 Silent p.C917C 0.25 TCGA-BR-A4CQ-01 15 33936587 33936587 A G RYR3 Missense_Mutation p.K1211R 0.44 possibly_damaging(0.577) TCGA-BR-A4CQ-01 15 51763453 51763453 G A DMXL2 Silent p.P2453P 0.73 TCGA-BR-A4CQ-01 15 64422454 64422454 G C SNX1 Missense_Mutation p.E317Q 0.17 deleterious(0) probably_damaging(0.951) TCGA-BR-A4CQ-01 15 79339211 79339211 T G RASGRF1 Missense_Mutation p.E252A 0.18 deleterious(0) possibly_damaging(0.833) TCGA-BR-A4CQ-01 15 83218272 83218272 T G CPEB1 Missense_Mutation p.N446T 0.10 deleterious(0.02) benign(0.258) TCGA-BR-A4CQ-01 15 91459446 91459446 G A MAN2A2 Missense_Mutation p.R985H 0.16 tolerated(0.62) benign(0.008) TCGA-BR-A4CQ-01 16 18883833 18883833 C T SMG1 Silent p.L668L 0.29 TCGA-BR-A4CQ-01 16 50709712 50709712 C G SNX20 Missense_Mutation p.R84P 0.14 deleterious(0) probably_damaging(0.994) TCGA-BR-A4CQ-01 16 55519277 55519277 C T MMP2 Missense_Mutation p.T199I 0.14 deleterious(0.04) benign(0.024) TCGA-BR-A4CQ-01 16 68718510 68718510 C T CDH3 Nonsense_Mutation p.Q403* 0.22 TCGA-BR-A4CQ-01 16 7568167 7568167 G A RBFOX1 Missense_Mutation p.A36T 0.06 tolerated(0.11) possibly_damaging(0.629) TCGA-BR-A4CQ-01 16 817420 817420 G A MSLN Missense_Mutation p.V524M 0.16 deleterious(0.03) benign(0.345) TCGA-BR-A4CQ-01 16 87678559 87678559 C T JPH3 Missense_Mutation p.R360C 0.26 deleterious(0) probably_damaging(0.993) TCGA-BR-A4CQ-01 17 29631447 29631447 G T EVI2B Nonsense_Mutation p.S394* 0.19 TCGA-BR-A4CQ-01 17 36991500 36991500 G A C17orf98 Missense_Mutation p.P136L 0.23 deleterious(0) probably_damaging(1) TCGA-BR-A4CQ-01 17 41143004 41143004 G A RUNDC1 Silent p.R371R 0.42 TCGA-BR-A4CQ-01 17 42030464 42030464 C T PYY Intron 0.20 TCGA-BR-A4CQ-01 17 42636499 42636499 C T FZD2 Silent p.F481F 0.23 TCGA-BR-A4CQ-01 17 46128574 46128574 C T NFE2L1 Silent p.L32L 0.11 TCGA-BR-A4CQ-01 17 56386420 56386420 G A BZRAP1 Missense_Mutation p.R1405W 0.21 tolerated(0.24) benign(0.007) TCGA-BR-A4CQ-01 17 56396519 56396519 A G BZRAP1 Missense_Mutation p.L544P 0.25 tolerated(0.13) benign(0.009) TCGA-BR-A4CQ-01 17 63200369 63200369 C T RGS9 Missense_Mutation p.R385C 0.39 deleterious(0.01) probably_damaging(0.985) TCGA-BR-A4CQ-01 17 63532604 63532604 G A AXIN2 Missense_Mutation p.R659W 0.12 deleterious(0.02) possibly_damaging(0.885) TCGA-BR-A4CQ-01 17 72428204 72428204 A G GPRC5C Silent p.Q9Q 0.28 TCGA-BR-A4CQ-01 17 7578403 7578403 C A TP53 Missense_Mutation p.C176F 0.66 deleterious(0) probably_damaging(0.993) TCGA-BR-A4CQ-01 17 76354442 76354442 G A SOCS3 3'UTR 0.19 TCGA-BR-A4CQ-01 18 43262407 43262407 C T SLC14A2 Missense_Mutation p.R896C 0.06 deleterious(0.01) benign(0.025) TCGA-BR-A4CQ-01 18 50994343 50994343 G T DCC Missense_Mutation p.K1233N 0.22 deleterious(0.05) possibly_damaging(0.893) TCGA-BR-A4CQ-01 18 580367 580367 G A CETN1 5'UTR 0.79 TCGA-BR-A4CQ-01 19 13226181 13226181 C T TRMT1 Missense_Mutation p.A185T 0.13 tolerated(0.39) benign(0.013) TCGA-BR-A4CQ-01 19 21240536 21240536 A T ZNF430 Silent p.A474A 0.11 TCGA-BR-A4CQ-01 19 33106644 33106644 C A ANKRD27 Missense_Mutation p.A699S 0.47 tolerated(0.72) benign(0.015) TCGA-BR-A4CQ-01 19 33870289 33870289 C T CEBPG Silent p.P48P 0.23 TCGA-BR-A4CQ-01 19 36940522 36940522 C A ZNF566 Missense_Mutation p.G206V 0.48 deleterious(0) probably_damaging(1) TCGA-BR-A4CQ-01 19 41863923 41863923 C T B9D2 Silent p.A31A 0.51 TCGA-BR-A4CQ-01 19 47844598 47844598 C T C5AR2 Missense_Mutation p.P181L 0.32 deleterious(0) probably_damaging(0.985) TCGA-BR-A4CQ-01 19 47981013 47981013 A G KPTN Silent p.D271D 0.14 TCGA-BR-A4CQ-01 19 50161535 50161535 G A SCAF1 Missense_Mutation p.R1273H 0.59 probably_damaging(0.992) TCGA-BR-A4CQ-01 19 53086784 53086784 A G ZNF701 3'UTR 0.23 TCGA-BR-A4CQ-01 19 53367302 53367302 C A CTD-2331H12.5 5'Flank 0.48 TCGA-BR-A4CQ-01 19 56419255 56419255 G C NLRP13 Missense_Mutation p.L784V 0.52 deleterious(0) probably_damaging(0.999) TCGA-BR-A4CQ-01 19 58067547 58067547 G A ZNF550 Intron 0.22 TCGA-BR-A4CQ-01 19 9010994 9010994 C T MUC16 Missense_Mutation p.R12975Q 0.20 benign(0.414) TCGA-BR-A4CQ-01 19 9073053 9073053 G A MUC16 Missense_Mutation p.T4798I 0.29 unknown(0) TCGA-BR-A4CQ-01 19 9076960 9076960 C G MUC16 Missense_Mutation p.E3496Q 0.30 unknown(0) TCGA-BR-A4CQ-01 1 109265047 109265047 A T FNDC7 Missense_Mutation p.N230I 0.22 tolerated(0.11) benign(0.033) TCGA-BR-A4CQ-01 1 11345936 11345936 G A UBIAD1 Silent p.T255T 0.05 TCGA-BR-A4CQ-01 1 114964156 114964156 G A TRIM33 Nonsense_Mutation p.R655* 0.05 TCGA-BR-A4CQ-01 1 12337907 12337907 G A VPS13D Missense_Mutation p.R1421H 0.44 possibly_damaging(0.796) TCGA-BR-A4CQ-01 1 12677213 12677213 C T DHRS3 Silent p.G47G 0.47 TCGA-BR-A4CQ-01 1 14108601 14108601 C T PRDM2 Silent p.N1437N 0.41 TCGA-BR-A4CQ-01 1 153005026 153005026 G T SPRR1B Missense_Mutation p.V69L 0.26 deleterious(0.04) benign(0.007) TCGA-BR-A4CQ-01 1 156524160 156524160 C T IQGAP3 Missense_Mutation p.V439M 0.18 tolerated(0.06) probably_damaging(0.993) TCGA-BR-A4CQ-01 1 158227483 158227483 C A CD1A 3'UTR 0.19 TCGA-BR-A4CQ-01 1 158627279 158627279 T G SPTA1 Missense_Mutation p.E931D 0.79 deleterious(0) probably_damaging(0.999) TCGA-BR-A4CQ-01 1 167944108 167944108 T C DCAF6 Missense_Mutation p.F98S 0.05 deleterious(0) probably_damaging(0.994) TCGA-BR-A4CQ-01 1 17264229 17264229 C T CROCC Silent p.A429A 0.08 TCGA-BR-A4CQ-01 1 17331968 17331968 C T ATP13A2 Silent p.L63L 0.10 TCGA-BR-A4CQ-01 1 186370075 186370075 T G OCLM 5'UTR 0.06 TCGA-BR-A4CQ-01 1 192153619 192153619 C T RGS18 Nonsense_Mutation p.R215* 0.24 TCGA-BR-A4CQ-01 1 196250003 196250003 A T KCNT2 Missense_Mutation p.L966H 0.24 tolerated(0.13) probably_damaging(0.979) TCGA-BR-A4CQ-01 1 196684775 196684775 A G CFH Silent p.T524T 0.71 TCGA-BR-A4CQ-01 1 196971772 196971772 G A CFHR5 Nonsense_Mutation p.W436* 0.10 TCGA-BR-A4CQ-01 1 202544208 202544208 C T PPP1R12B Intron 0.32 TCGA-BR-A4CQ-01 1 210012275 210012275 C T DIEXF Missense_Mutation p.R362W 0.21 deleterious(0) probably_damaging(1) TCGA-BR-A4CQ-01 1 213415473 213415475 TTT - RPS6KC1 In_Frame_Del p.F886del 0.28 TCGA-BR-A4CQ-01 1 216462716 216462716 C T USH2A Missense_Mutation p.R626Q 0.21 possibly_damaging(0.7) TCGA-BR-A4CQ-01 1 229619858 229619858 G A NUP133 Missense_Mutation p.T512I 0.28 tolerated(0.46) benign(0.001) TCGA-BR-A4CQ-01 1 22974313 22974313 C A C1QC 3'UTR 0.46 TCGA-BR-A4CQ-01 1 23415425 23415425 C T LUZP1 Missense_Mutation p.R1065Q 0.47 tolerated_low_confidence(0.05) benign(0.04) TCGA-BR-A4CQ-01 1 26888072 26888072 G A RPS6KA1 Missense_Mutation p.R512Q 0.09 tolerated(0.13) benign(0.008) TCGA-BR-A4CQ-01 1 40253912 40253912 G A BMP8B Silent p.H82H 0.27 TCGA-BR-A4CQ-01 1 45799143 45799143 C T MUTYH Missense_Mutation p.R94Q 0.36 tolerated(0.1) benign(0.42) TCGA-BR-A4CQ-01 20 23805914 23805914 G T CST2 Missense_Mutation p.T92N 0.30 deleterious(0.02) possibly_damaging(0.67) TCGA-BR-A4CQ-01 20 3218214 3218214 G A SLC4A11 Nonsense_Mutation p.Q65* 0.22 TCGA-BR-A4CQ-01 20 4163097 4163097 C T SMOX Missense_Mutation p.P324L 0.48 tolerated(0.63) benign(0.002) TCGA-BR-A4CQ-01 20 51871962 51871962 G T TSHZ2 Missense_Mutation p.E655D 0.06 tolerated(0.54) benign(0.001) TCGA-BR-A4CQ-01 20 58570907 58570907 A C CDH26 Missense_Mutation p.L562F 0.13 tolerated(0.07) benign(0.26) TCGA-BR-A4CQ-01 20 825521 825521 C T FAM110A Missense_Mutation p.P25L 0.67 deleterious(0) probably_damaging(0.999) TCGA-BR-A4CQ-01 21 40627657 40627657 A G BRWD1 Silent p.A723A 0.37 TCGA-BR-A4CQ-01 22 30689913 30689913 C A TBC1D10A Nonsense_Mutation p.E305* 0.19 TCGA-BR-A4CQ-01 22 50615660 50615660 G A PANX2 Silent p.A173A 0.29 TCGA-BR-A4CQ-01 2 102460759 102460759 C T MAP4K4 Nonsense_Mutation p.R407* 0.21 TCGA-BR-A4CQ-01 2 108477264 108477264 G A RGPD4 Missense_Mutation p.G601R 0.10 tolerated(0.07) probably_damaging(0.979) TCGA-BR-A4CQ-01 2 113088794 113088794 G T ZC3H6 Missense_Mutation p.D767Y 0.31 deleterious(0) possibly_damaging(0.778) TCGA-BR-A4CQ-01 2 130897230 130897230 G A CCDC74B Silent p.A347A 0.61 TCGA-BR-A4CQ-01 2 133540023 133540023 G T NCKAP5 Missense_Mutation p.A1454D 0.23 tolerated(0.05) benign(0.376) TCGA-BR-A4CQ-01 2 136566344 136566344 C A LCT Missense_Mutation p.E1191D 0.47 tolerated(0.26) benign(0.044) TCGA-BR-A4CQ-01 2 15614226 15614226 G A NBAS Missense_Mutation p.R522C 0.22 deleterious(0) probably_damaging(0.977) TCGA-BR-A4CQ-01 2 160086925 160086925 C T TANC1 Missense_Mutation p.S1663L 0.54 tolerated_low_confidence(0.1) benign(0.043) TCGA-BR-A4CQ-01 2 163029701 163029701 A T FAP Missense_Mutation p.F689I 0.21 deleterious(0) probably_damaging(1) TCGA-BR-A4CQ-01 2 179432952 179432952 G T TTN Missense_Mutation p.N25969K 0.19 TCGA-BR-A4CQ-01 2 179452058 179452058 C T TTN Missense_Mutation p.G21294S 0.54 TCGA-BR-A4CQ-01 2 182852605 182852605 C A PPP1R1C Missense_Mutation p.L48I 0.04 tolerated(0.41) probably_damaging(0.995) TCGA-BR-A4CQ-01 2 196729451 196729451 G T DNAH7 Missense_Mutation p.P2310T 0.31 tolerated(0.07) benign(0.314) TCGA-BR-A4CQ-01 2 220504270 220504270 C A SLC4A3 Silent p.L1057L 0.19 TCGA-BR-A4CQ-01 2 237489880 237489880 G A ACKR3 Missense_Mutation p.V258M 0.51 deleterious(0.01) probably_damaging(0.99) TCGA-BR-A4CQ-01 2 238726967 238726967 G A RBM44 Missense_Mutation p.D470N 0.20 deleterious(0.01) probably_damaging(1) TCGA-BR-A4CQ-01 2 239161666 239161666 G A PER2 Missense_Mutation p.P1000S 0.21 deleterious(0.04) probably_damaging(0.999) TCGA-BR-A4CQ-01 2 46411945 46411945 C T PRKCE Silent p.D713D 0.36 TCGA-BR-A4CQ-01 2 46987047 46987047 A G SOCS5 Missense_Mutation p.K460E 0.34 deleterious(0.05) possibly_damaging(0.834) TCGA-BR-A4CQ-01 2 68480207 68480207 C T PPP3R1 5'Flank 0.35 TCGA-BR-A4CQ-01 2 80773040 80773040 T A CTNNA2 Missense_Mutation p.N464K 0.12 deleterious(0) probably_damaging(0.933) TCGA-BR-A4CQ-01 2 96780826 96780826 G A ADRA2B Missense_Mutation p.R355C 0.12 deleterious(0.01) benign(0.302) TCGA-BR-A4CQ-01 3 101540691 101540691 G A NXPE3 Missense_Mutation p.E525K 0.66 deleterious(0) probably_damaging(0.997) TCGA-BR-A4CQ-01 3 107435518 107435518 C T BBX Missense_Mutation p.P76L 0.38 deleterious(0.01) possibly_damaging(0.511) TCGA-BR-A4CQ-01 3 128780765 128780765 C G GP9 Missense_Mutation p.N61K 0.09 deleterious(0) probably_damaging(1) TCGA-BR-A4CQ-01 3 138739150 138739150 C T PRR23B Silent p.S118S 0.74 TCGA-BR-A4CQ-01 3 140396976 140396976 G A TRIM42 5'UTR 0.66 TCGA-BR-A4CQ-01 3 154886304 154886304 G C MME Missense_Mutation p.D602H 0.19 deleterious(0) probably_damaging(0.999) TCGA-BR-A4CQ-01 3 171965381 171965381 G A FNDC3B Missense_Mutation p.C108Y 0.46 tolerated(0.79) benign(0.235) TCGA-BR-A4CQ-01 3 18435984 18435984 T C SATB1 Silent p.V392V 0.43 TCGA-BR-A4CQ-01 3 186503790 186503790 T A EIF4A2 Missense_Mutation p.V156D 0.34 deleterious(0) possibly_damaging(0.871) TCGA-BR-A4CQ-01 3 189689713 189689713 T C LEPREL1 Missense_Mutation p.K595E 0.05 deleterious(0) probably_damaging(0.995) TCGA-BR-A4CQ-01 3 45077363 45077363 G A CLEC3B Missense_Mutation p.D186N 0.37 deleterious(0.01) probably_damaging(1) TCGA-BR-A4CQ-01 3 49166009 49166009 G T LAMB2 Missense_Mutation p.Q634K 0.42 tolerated(0.39) benign(0.004) TCGA-BR-A4CQ-01 3 49847040 49847040 C G UBA7 Missense_Mutation p.G675R 0.26 tolerated(0.35) benign(0.033) TCGA-BR-A4CQ-01 3 51749696 51749696 G A GRM2 Missense_Mutation p.R636H 0.43 deleterious(0) probably_damaging(1) TCGA-BR-A4CQ-01 3 64582545 64582545 G A ADAMTS9 Silent p.S1380S 0.06 TCGA-BR-A4CQ-01 3 69231783 69231783 G C FRMD4B Missense_Mutation p.L669V 0.29 deleterious(0.02) probably_damaging(0.996) TCGA-BR-A4CQ-01 3 93699275 93699275 G C ARL13B Missense_Mutation p.S3T 0.06 tolerated(0.06) benign(0.014) TCGA-BR-A4CQ-01 4 119631250 119631261 TACAGAAGAAAT - METTL14 In_Frame_Del p.T389_I392del 0.20 TCGA-BR-A4CQ-01 4 121739673 121739673 C G PRDM5 Missense_Mutation p.G162A 0.31 tolerated(0.81) benign(0.002) TCGA-BR-A4CQ-01 4 126242374 126242374 C A FAT4 Missense_Mutation p.A1603E 0.27 probably_damaging(0.99) TCGA-BR-A4CQ-01 4 166915615 166915615 C A TLL1 Silent p.A148A 0.21 TCGA-BR-A4CQ-01 4 178911747 178911747 G C LINC01098 3'UTR 0.19 TCGA-BR-A4CQ-01 5 11384956 11384956 G A CTNND2 Missense_Mutation p.S333L 0.28 tolerated(0.06) benign(0.217) TCGA-BR-A4CQ-01 5 121311043 121311043 A G SRFBP1 Silent p.R53R 0.29 TCGA-BR-A4CQ-01 5 140229774 140229774 T C PCDHA9 Missense_Mutation p.L565P 0.36 deleterious_low_confidence(0) probably_damaging(0.929) TCGA-BR-A4CQ-01 5 140595824 140595824 C A PCDHB13 Missense_Mutation p.A710E 0.06 deleterious_low_confidence(0.01) possibly_damaging(0.869) TCGA-BR-A4CQ-01 5 1471036 1471052 CGCTCTGTGGGGAGAGA - LPCAT1 Splice_Site p.X394_splice 0.31 TCGA-BR-A4CQ-01 5 147261702 147261702 A C SCGB3A2 3'UTR 0.38 TCGA-BR-A4CQ-01 5 23526712 23526712 T C PRDM9 Silent p.N505N 0.73 TCGA-BR-A4CQ-01 5 23526955 23526955 G C PRDM9 Silent p.G586G 0.47 TCGA-BR-A4CQ-01 5 35779396 35779396 C T SPEF2 Silent p.T1465T 0.08 TCGA-BR-A4CQ-01 5 39388926 39388926 T G DAB2 Missense_Mutation p.D200A 0.04 tolerated(0.07) benign(0.009) TCGA-BR-A4CQ-01 5 43609438 43609438 T C NNT Silent p.P47P 0.04 TCGA-BR-A4CQ-01 5 9227000 9227000 G C SEMA5A Missense_Mutation p.P138R 0.31 deleterious(0) possibly_damaging(0.903) TCGA-BR-A4CQ-01 6 119338083 119338083 C A FAM184A Missense_Mutation p.Q453H 0.21 tolerated(0.27) benign(0.042) TCGA-BR-A4CQ-01 6 119670147 119670147 C T MAN1A1 Silent p.R28R 0.16 TCGA-BR-A4CQ-01 6 126080780 126080780 C T HEY2 Silent p.F282F 0.57 TCGA-BR-A4CQ-01 6 13792193 13792193 G T MCUR1 Missense_Mutation p.T314K 0.21 deleterious(0) probably_damaging(0.998) TCGA-BR-A4CQ-01 6 152690232 152690232 G A SYNE1 Missense_Mutation p.P3228S 0.13 benign(0.033) TCGA-BR-A4CQ-01 6 152718079 152718079 G T SYNE1 Missense_Mutation p.L2463I 0.06 possibly_damaging(0.77) TCGA-BR-A4CQ-01 6 16328351 16328351 C T ATXN1 Missense_Mutation p.G64E 0.32 tolerated(0.1) possibly_damaging(0.776) TCGA-BR-A4CQ-01 6 165715680 165715680 A C C6orf118 Missense_Mutation p.L44R 0.39 deleterious(0.01) probably_damaging(1) TCGA-BR-A4CQ-01 6 31504182 31504182 G A DDX39B Intron 0.37 TCGA-BR-A4CQ-01 6 394831 394831 T C IRF4 Missense_Mutation p.L76P 0.09 deleterious(0) probably_damaging(0.967) TCGA-BR-A4CQ-01 6 41652678 41652678 C T TFEB Missense_Mutation p.A364T 0.28 tolerated(0.31) benign(0.412) TCGA-BR-A4CQ-01 6 43029068 43029068 G A KLC4 Missense_Mutation p.A17T 0.23 deleterious_low_confidence(0.04) benign(0.08) TCGA-BR-A4CQ-01 6 54806546 54806546 C A FAM83B Missense_Mutation p.S926Y 0.08 deleterious(0.01) possibly_damaging(0.453) TCGA-BR-A4CQ-01 6 54806610 54806610 T G FAM83B Missense_Mutation p.I947M 0.11 tolerated(0.23) benign(0.013) TCGA-BR-A4CQ-01 6 56819242 56819242 C T BEND6 5'Flank 0.23 TCGA-BR-A4CQ-01 6 71004163 71004163 C T COL9A1 Missense_Mutation p.D135N 0.40 unknown(0) TCGA-BR-A4CQ-01 6 73332128 73332128 G A KCNQ5 Missense_Mutation p.G71S 0.67 tolerated(0.25) benign(0.006) TCGA-BR-A4CQ-01 6 90417179 90417179 C G MDN1 Missense_Mutation p.D2639H 0.23 possibly_damaging(0.903) TCGA-BR-A4CQ-01 7 123302309 123302309 C T LMOD2 Silent p.N223N 0.70 TCGA-BR-A4CQ-01 7 140373462 140373462 T C ADCK2 Missense_Mutation p.F111S 0.06 tolerated(0.6) benign(0.114) TCGA-BR-A4CQ-01 7 142989724 142989724 C T CASP2 Silent p.Y136Y 0.78 TCGA-BR-A4CQ-01 7 143807364 143807364 A C OR2A2 Missense_Mutation p.K230T 0.72 tolerated(0.14) benign(0.013) TCGA-BR-A4CQ-01 7 15405215 15405215 C T AGMO Missense_Mutation p.R396H 0.56 deleterious(0) probably_damaging(0.996) TCGA-BR-A4CQ-01 7 157931128 157931128 G A PTPRN2 Silent p.D330D 0.16 TCGA-BR-A4CQ-01 7 26224557 26224557 T C NFE2L3 Silent p.D413D 0.50 TCGA-BR-A4CQ-01 7 57188696 57188696 A T ZNF479 Nonsense_Mutation p.Y142* 0.23 TCGA-BR-A4CQ-01 7 73097334 73097334 G A DNAJC30 Silent p.T140T 0.45 TCGA-BR-A4CQ-01 8 118834812 118834812 G A EXT1 Missense_Mutation p.H437Y 0.06 tolerated(0.4) benign(0.012) TCGA-BR-A4CQ-01 8 134030213 134030213 G T TG Missense_Mutation p.W2251C 0.29 deleterious(0) probably_damaging(0.996) TCGA-BR-A4CQ-01 8 141545600 141545600 G A AGO2 Silent p.F746F 0.20 TCGA-BR-A4CQ-01 8 1497185 1497185 C T DLGAP2 Missense_Mutation p.P109L 0.12 deleterious(0) probably_damaging(1) TCGA-BR-A4CQ-01 8 30701748 30701748 A G TEX15 Missense_Mutation p.S1596P 0.20 deleterious(0.05) possibly_damaging(0.804) TCGA-BR-A4CQ-01 8 30701929 30701929 C T TEX15 Silent p.P1535P 0.25 TCGA-BR-A4CQ-01 8 30704291 30704291 T G TEX15 Missense_Mutation p.K748T 0.23 tolerated(0.33) benign(0.382) TCGA-BR-A4CQ-01 8 89339533 89339533 G A MMP16 5'UTR 0.38 TCGA-BR-A4CQ-01 8 97156694 97156694 G A GDF6 3'UTR 0.40 TCGA-BR-A4CQ-01 8 98078419 98078419 G A CPQ Nonsense_Mutation p.W412* 0.16 TCGA-BR-A4CQ-01 9 134136311 134136311 C T FAM78A Silent p.P250P 0.42 TCGA-BR-A4CQ-01 9 136279592 136279592 G A REXO4 Intron 0.44 TCGA-BR-A4CQ-01 9 136405800 136405800 G A ADAMTSL2 Missense_Mutation p.A165T 0.11 deleterious(0) probably_damaging(1) TCGA-BR-A4CQ-01 9 98241322 98241322 G A PTCH1 Missense_Mutation p.A392V 0.20 deleterious(0) probably_damaging(0.999) TCGA-BR-A4CQ-01 X 24095010 24095010 C T EIF2S3 3'UTR 0.67 TCGA-BR-A4CQ-01 X 53243871 53243871 C T KDM5C Silent p.A374A 0.42 TCGA-BR-A4CQ-01 X 80552778 80552778 T C SH3BGRL 3'UTR 0.67 TCGA-BR-A4CR-01 11 118765361 118765361 A T CXCR5 Missense_Mutation p.T370S 0.24 tolerated_low_confidence(0.54) benign(0.005) TCGA-BR-A4CR-01 11 19077306 19077306 C A MRGPRX2 Missense_Mutation p.G215V 0.23 deleterious(0) benign(0.027) TCGA-BR-A4CR-01 11 61504739 61504739 G A DAGLA Missense_Mutation p.R486H 0.31 deleterious(0.03) probably_damaging(0.998) TCGA-BR-A4CR-01 11 65413832 65413832 G A SIPA1 Silent p.T468T 0.53 TCGA-BR-A4CR-01 12 132403762 132403762 G C ULK1 Missense_Mutation p.E839D 0.25 deleterious(0.04) probably_damaging(0.975) TCGA-BR-A4CR-01 12 66698721 66698721 A T HELB Missense_Mutation p.E133V 0.20 deleterious(0) possibly_damaging(0.71) TCGA-BR-A4CR-01 12 7635248 7635248 G A CD163 Missense_Mutation p.R1080W 0.54 deleterious(0.04) benign(0.01) TCGA-BR-A4CR-01 12 8329955 8329955 C G ZNF705A Missense_Mutation p.P227A 0.18 deleterious(0.01) benign(0.006) TCGA-BR-A4CR-01 12 91347821 91347821 G A CCER1 Silent p.N233N 0.54 TCGA-BR-A4CR-01 12 9162024 9162024 T A KLRG1 Missense_Mutation p.I154N 0.29 deleterious(0) probably_damaging(0.999) TCGA-BR-A4CR-01 13 109518544 109518544 T - MYO16 Frame_Shift_Del p.L439Cfs*73 0.18 TCGA-BR-A4CR-01 13 48941648 48941648 C T RB1 Nonsense_Mutation p.R320* 0.93 TCGA-BR-A4CR-01 14 20295880 20295880 A T OR4N2 Silent p.I91I 0.05 TCGA-BR-A4CR-01 14 20344654 20344654 C A OR4K2 Missense_Mutation p.F76L 0.19 deleterious(0.03) possibly_damaging(0.814) TCGA-BR-A4CR-01 14 20404344 20404344 G A OR4K1 Silent p.E173E 0.13 TCGA-BR-A4CR-01 14 30103740 30103740 T - PRKD1 Frame_Shift_Del p.T400Qfs*8 0.32 TCGA-BR-A4CR-01 14 58724709 58724709 G A PSMA3 Missense_Mutation p.G133S 0.31 deleterious(0.01) probably_damaging(0.918) TCGA-BR-A4CR-01 15 74637521 74637521 G T CYP11A1 Silent p.A163A 0.82 TCGA-BR-A4CR-01 16 69760487 69760488 TA - NQO1 5'UTR 0.65 TCGA-BR-A4CR-01 17 11648301 11648301 C T DNAH9 Missense_Mutation p.A2100V 0.53 benign(0.197) TCGA-BR-A4CR-01 17 19091385 19091385 A T SNORD3A RNA 0.09 TCGA-BR-A4CR-01 17 19314763 19314763 G A RNF112 Silent p.R14R 0.11 TCGA-BR-A4CR-01 17 2597254 2597254 C A CLUH Missense_Mutation p.E1018D 0.11 tolerated(0.59) benign(0.066) TCGA-BR-A4CR-01 17 28538390 28538390 C T SLC6A4 Silent p.A419A 0.20 TCGA-BR-A4CR-01 17 33806364 33806364 G A SLFN12L Silent p.L289L 0.46 TCGA-BR-A4CR-01 17 7577082 7577082 C T TP53 Missense_Mutation p.E286K 0.87 deleterious(0) probably_damaging(0.982) TCGA-BR-A4CR-01 17 79409752 79409752 G A RP11-1055B8.7 Silent p.A459A 0.27 TCGA-BR-A4CR-01 18 42532899 42532899 G A SETBP1 Silent p.P1198P 0.34 TCGA-BR-A4CR-01 18 52555243 52555243 G T RAB27B Missense_Mutation p.A121S 0.28 tolerated(0.4) possibly_damaging(0.529) TCGA-BR-A4CR-01 18 7026103 7026103 C T LAMA1 Silent p.A759A 0.90 TCGA-BR-A4CR-01 19 20003002 20003002 G T ZNF253 Nonsense_Mutation p.E316* 0.19 TCGA-BR-A4CR-01 19 22574985 22574985 T A ZNF98 Missense_Mutation p.K351I 0.79 deleterious(0.01) probably_damaging(0.997) TCGA-BR-A4CR-01 19 33706778 33706778 C - SLC7A10 Frame_Shift_Del p.V85* 0.24 TCGA-BR-A4CR-01 19 33706780 33706780 C G SLC7A10 Missense_Mutation p.G84A 0.27 tolerated(0.12) benign(0.065) TCGA-BR-A4CR-01 19 51322541 51322541 A T KLK1 Missense_Mutation p.V233D 0.13 tolerated(0.76) benign(0.002) TCGA-BR-A4CR-01 19 59080638 59080638 A C MZF1 Intron 0.30 TCGA-BR-A4CR-01 19 6828175 6828175 T A VAV1 Missense_Mutation p.L339H 0.43 deleterious(0) probably_damaging(0.998) TCGA-BR-A4CR-01 19 7623881 7623881 A G PNPLA6 Silent p.V1191V 0.40 TCGA-BR-A4CR-01 1 113126609 113126609 G A ST7L Missense_Mutation p.H281Y 0.39 tolerated(1) benign(0.02) TCGA-BR-A4CR-01 1 12429548 12429548 C T VPS13D Silent p.G3533G 0.18 TCGA-BR-A4CR-01 1 154310160 154310160 T G ATP8B2 Intron 0.56 TCGA-BR-A4CR-01 1 156594403 156594403 G T HAPLN2 Missense_Mutation p.E189D 0.07 tolerated(0.12) possibly_damaging(0.602) TCGA-BR-A4CR-01 1 32098238 32098238 G A PEF1 Silent p.N161N 0.12 TCGA-BR-A4CR-01 1 3334448 3334448 G A PRDM16 Silent p.A916A 0.42 TCGA-BR-A4CR-01 1 43621984 43621984 G T FAM183A Nonstop_Mutation p.*135Yext*5 0.43 TCGA-BR-A4CR-01 1 9784136 9784136 C T PIK3CD Nonsense_Mutation p.R902* 0.43 TCGA-BR-A4CR-01 20 33104255 33104255 C A DYNLRB1 5'UTR 0.37 TCGA-BR-A4CR-01 20 3777323 3777323 T G CDC25B Missense_Mutation p.S49A 0.09 tolerated(0.07) benign(0.15) TCGA-BR-A4CR-01 20 43386771 43386771 C T RIMS4 Silent p.L98L 0.41 TCGA-BR-A4CR-01 20 61594078 61594078 C T SLC17A9 Silent p.Y200Y 0.21 TCGA-BR-A4CR-01 20 62046425 62046441 GGCAGCCACGCCTCGGG - KCNQ2 Frame_Shift_Del p.P447Qfs*68 0.23 TCGA-BR-A4CR-01 22 18389499 18389499 C T MICAL3 Missense_Mutation p.G27E 0.51 probably_damaging(1) TCGA-BR-A4CR-01 22 26932452 26932452 C T TPST2 Silent p.K281K 0.39 TCGA-BR-A4CR-01 2 100623465 100623465 G A AFF3 Missense_Mutation p.L193F 0.53 tolerated(0.13) probably_damaging(0.965) TCGA-BR-A4CR-01 2 125671839 125671839 G A CNTNAP5 Missense_Mutation p.E1299K 0.25 deleterious(0.01) benign(0.035) TCGA-BR-A4CR-01 2 152737347 152737347 G A CACNB4 Silent p.S119S 0.24 TCGA-BR-A4CR-01 2 211018370 211018370 A T KANSL1L Missense_Mutation p.F313I 0.30 tolerated(0.14) benign(0.116) TCGA-BR-A4CR-01 2 69002257 69002257 C T ARHGAP25 Intron 0.30 TCGA-BR-A4CR-01 3 140785640 140785640 C A SPSB4 Missense_Mutation p.P232T 0.80 deleterious(0.02) benign(0.202) TCGA-BR-A4CR-01 3 38768533 38768533 A C SCN10A Missense_Mutation p.L884R 0.29 deleterious(0) probably_damaging(1) TCGA-BR-A4CR-01 3 53880617 53880617 T C IL17RB Translation_Start_Site p.M1? 0.35 deleterious_low_confidence(0) possibly_damaging(0.693) TCGA-BR-A4CR-01 4 125593582 125593582 G T ANKRD50 Missense_Mutation p.L284I 0.69 tolerated(0.19) benign(0.288) TCGA-BR-A4CR-01 5 170736747 170736747 C A TLX3 Silent p.P126P 0.08 TCGA-BR-A4CR-01 5 179382632 179382632 C T RNF130 3'UTR 0.72 TCGA-BR-A4CR-01 5 21755828 21755828 G A CDH12 Missense_Mutation p.T586I 0.18 deleterious(0.01) possibly_damaging(0.807) TCGA-BR-A4CR-01 5 32712408 32712408 C T NPR3 Missense_Mutation p.R176C 0.17 deleterious(0) probably_damaging(1) TCGA-BR-A4CR-01 5 39377141 39377141 G A DAB2 Missense_Mutation p.A583V 0.20 tolerated(0.27) benign(0.007) TCGA-BR-A4CR-01 5 45695964 45695964 C T HCN1 Missense_Mutation p.A78T 0.82 tolerated(0.54) benign(0.018) TCGA-BR-A4CR-01 5 71489953 71489953 C T MAP1B Silent p.L257L 0.25 TCGA-BR-A4CR-01 6 151936585 151936585 C - CCDC170 Frame_Shift_Del p.T573Ifs*11 0.27 TCGA-BR-A4CR-01 6 26240797 26240797 G T HIST1H4F Silent p.S48S 0.24 TCGA-BR-A4CR-01 6 28539899 28539899 T C SCAND3 Missense_Mutation p.D1256G 0.40 deleterious_low_confidence(0.04) benign(0.006) TCGA-BR-A4CR-01 6 31933769 31933769 A G SKIV2L Silent p.A727A 0.31 TCGA-BR-A4CR-01 6 3850236 3850236 C T FAM50B Missense_Mutation p.T64M 0.46 deleterious(0.01) possibly_damaging(0.698) TCGA-BR-A4CR-01 6 55381357 55381357 T C HMGCLL1 Silent p.P144P 0.13 TCGA-BR-A4CR-01 6 72984124 72984124 G A RIMS1 Silent p.P1157P 0.36 TCGA-BR-A4CR-01 6 90604457 90604457 G T GJA10 Missense_Mutation p.L90F 0.19 deleterious(0) probably_damaging(1) TCGA-BR-A4CR-01 7 126173853 126173853 G A GRM8 Missense_Mutation p.T528M 0.28 tolerated(1) benign(0.091) TCGA-BR-A4CR-01 7 135366192 135366192 C G SLC13A4 3'UTR 0.28 TCGA-BR-A4CR-01 7 150714339 150714339 A G ATG9B Silent p.T691T 0.34 TCGA-BR-A4CR-01 7 154237681 154237681 T A DPP6 Silent p.T174T 0.40 TCGA-BR-A4CR-01 7 50450356 50450356 C T IKZF1 Silent p.Y180Y 0.49 TCGA-BR-A4CR-01 7 73114652 73114652 T G STX1A 3'UTR 0.46 TCGA-BR-A4CR-01 8 48772214 48772214 G A PRKDC Silent p.S2054S 0.78 TCGA-BR-A4CR-01 9 117845084 117845084 A G TNC Silent p.L712L 0.18 TCGA-BR-A4CR-01 9 131830597 131830597 A T FAM73B Missense_Mutation p.S464C 0.08 deleterious(0) probably_damaging(0.999) TCGA-BR-A4CR-01 9 133914363 133914363 C T LAMC3 Silent p.H363H 0.28 TCGA-BR-A4CR-01 9 134322501 134322501 G C PRRC2B Missense_Mutation p.Q295H 0.25 deleterious(0.05) possibly_damaging(0.88) TCGA-BR-A4CR-01 X 102337096 102337096 C T NXF3 Intron 0.86 TCGA-BR-A4CR-01 X 107979402 107979402 G A IRS4 Missense_Mutation p.T58M 0.44 deleterious_low_confidence(0.04) possibly_damaging(0.854) TCGA-BR-A4CR-01 X 88009104 88009104 G A CPXCR1 Missense_Mutation p.R230H 0.84 tolerated(1) benign(0.217) TCGA-BR-A4CS-01 10 100150734 100150734 G C PYROXD2 Intron 0.16 TCGA-BR-A4CS-01 10 129921418 129921418 G C MKI67 Missense_Mutation p.D36E 0.18 deleterious(0) probably_damaging(0.999) TCGA-BR-A4CS-01 10 25273693 25273693 T A ENKUR Nonsense_Mutation p.K246* 0.14 TCGA-BR-A4CS-01 10 52595973 52595973 C G A1CF Missense_Mutation p.E163D 0.03 deleterious(0.01) benign(0.049) TCGA-BR-A4CS-01 10 6255678 6255678 C T PFKFB3 Missense_Mutation p.R57C 0.18 benign(0.428) TCGA-BR-A4CS-01 10 71003047 71003047 C T HKDC1 Silent p.D267D 0.22 TCGA-BR-A4CS-01 11 118375821 118375821 C T KMT2A Missense_Mutation p.P3072S 0.19 possibly_damaging(0.504) TCGA-BR-A4CS-01 11 119243994 119243994 T C USP2 Missense_Mutation p.Y66C 0.04 deleterious_low_confidence(0.04) possibly_damaging(0.808) TCGA-BR-A4CS-01 11 1274131 1274131 C T MUC5B Silent p.N5046N 0.38 TCGA-BR-A4CS-01 11 14889193 14889193 C A PDE3B Missense_Mutation p.P1010T 0.21 deleterious(0) probably_damaging(1) TCGA-BR-A4CS-01 11 15267667 15267667 C T INSC 3'UTR 0.16 TCGA-BR-A4CS-01 11 55703337 55703338 - A OR5I1 Frame_Shift_Ins p.C181Lfs*2 0.18 TCGA-BR-A4CS-01 11 6232745 6232745 G A FAM160A2 Silent p.L984L 0.02 TCGA-BR-A4CS-01 11 62445472 62445472 G A UBXN1 Missense_Mutation p.R137W 0.16 deleterious(0) probably_damaging(0.934) TCGA-BR-A4CS-01 11 6341682 6341682 C T PRKCDBP Missense_Mutation p.G9R 0.81 deleterious(0.04) benign(0.192) TCGA-BR-A4CS-01 11 63978840 63978840 C T FERMT3 Missense_Mutation p.P203L 0.20 tolerated(0.08) benign(0.075) TCGA-BR-A4CS-01 11 64597428 64597428 G T CDC42BPG Missense_Mutation p.A1161E 0.20 tolerated(0.3) benign(0.392) TCGA-BR-A4CS-01 11 75319364 75319365 - TTCC MAP6 Frame_Shift_Ins p.N303Kfs*3 0.19 TCGA-BR-A4CS-01 11 93913992 93913992 G C PANX1 Missense_Mutation p.G413A 0.26 tolerated(0.44) benign(0.034) TCGA-BR-A4CS-01 11 93913996 93913996 G A PANX1 Silent p.E414E 0.26 TCGA-BR-A4CS-01 11 93914021 93914021 G A PANX1 Missense_Mutation p.D423N 0.26 tolerated_low_confidence(0.34) benign(0.006) TCGA-BR-A4CS-01 12 100043097 100043097 A C FAM71C Missense_Mutation p.E216A 0.15 deleterious(0.01) benign(0.101) TCGA-BR-A4CS-01 12 10005861 10005861 T A CLEC2B 3'UTR 0.38 TCGA-BR-A4CS-01 12 10134661 10134661 G C CLEC12A Missense_Mutation p.G202R 0.14 tolerated(0.05) possibly_damaging(0.908) TCGA-BR-A4CS-01 12 109877497 109877497 G A MYO1H Missense_Mutation p.V770M 0.42 tolerated(0.1) benign(0.03) TCGA-BR-A4CS-01 12 116453041 116453041 C T MED13L Missense_Mutation p.V350I 0.11 tolerated(0.4) unknown(0) TCGA-BR-A4CS-01 12 124343737 124343737 G A DNAH10 Missense_Mutation p.R2106H 0.15 probably_damaging(0.998) TCGA-BR-A4CS-01 12 129442113 129442113 A G GLT1D1 Silent p.V188V 0.09 TCGA-BR-A4CS-01 12 131283094 131283094 G C STX2 Missense_Mutation p.I254M 0.04 deleterious(0.02) possibly_damaging(0.707) TCGA-BR-A4CS-01 12 13241739 13241739 G A GSG1 Intron 0.17 TCGA-BR-A4CS-01 12 1553865 1553865 C T ERC1 Silent p.D1054D 0.18 TCGA-BR-A4CS-01 12 21355482 21355482 A C SLCO1B1 Missense_Mutation p.K398T 0.15 deleterious(0) probably_damaging(0.99) TCGA-BR-A4CS-01 12 21623974 21623974 C T RECQL Missense_Mutation p.A576T 0.23 tolerated(0.05) probably_damaging(0.978) TCGA-BR-A4CS-01 12 39994380 39994380 G A ABCD2 Missense_Mutation p.P547S 0.15 deleterious(0) possibly_damaging(0.863) TCGA-BR-A4CS-01 12 40692268 40692268 A T LRRK2 Missense_Mutation p.E1107V 0.13 tolerated(0.12) possibly_damaging(0.856) TCGA-BR-A4CS-01 12 5153796 5153796 C T KCNA5 Silent p.N161N 0.11 TCGA-BR-A4CS-01 12 56630725 56630725 C T SLC39A5 Silent p.F406F 0.13 TCGA-BR-A4CS-01 12 62104145 62104145 T G FAM19A2 3'UTR 0.11 TCGA-BR-A4CS-01 12 70732502 70732502 C T CNOT2 Silent p.L360L 0.05 TCGA-BR-A4CS-01 13 36006473 36006473 C T NBEA Missense_Mutation p.R2083C 0.19 deleterious(0.01) probably_damaging(0.987) TCGA-BR-A4CS-01 13 39262682 39262682 G A FREM2 Missense_Mutation p.D401N 0.25 tolerated(0.21) possibly_damaging(0.627) TCGA-BR-A4CS-01 14 101498321 101498321 C T MIR495 5'Flank 0.20 TCGA-BR-A4CS-01 14 21992064 21992064 C A SALL2 Missense_Mutation p.D600Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-BR-A4CS-01 14 45497516 45497516 G T FAM179B Missense_Mutation p.E1214D 0.22 tolerated(0.1) possibly_damaging(0.544) TCGA-BR-A4CS-01 14 65208577 65208577 C T PLEKHG3 Missense_Mutation p.P725L 0.20 deleterious(0.01) benign(0.099) TCGA-BR-A4CS-01 14 94931130 94931130 G T SERPINA9 Missense_Mutation p.L340I 0.21 deleterious(0.03) probably_damaging(0.998) TCGA-BR-A4CS-01 15 101938652 101938652 G A PCSK6 Missense_Mutation p.P317L 0.18 deleterious(0) probably_damaging(1) TCGA-BR-A4CS-01 15 44089096 44089096 C T SERINC4 Missense_Mutation p.C296Y 0.15 deleterious(0) probably_damaging(0.999) TCGA-BR-A4CS-01 15 51503185 51503185 C T CYP19A1 Missense_Mutation p.M444I 0.14 tolerated(0.09) probably_damaging(0.999) TCGA-BR-A4CS-01 15 65553347 65553347 G A PARP16 Missense_Mutation p.R237C 0.04 deleterious(0) probably_damaging(0.969) TCGA-BR-A4CS-01 15 71128781 71128781 C T LARP6 Silent p.P88P 0.23 TCGA-BR-A4CS-01 15 72551962 72551962 C G PARP6 Missense_Mutation p.G266A 0.11 deleterious(0.01) probably_damaging(0.979) TCGA-BR-A4CS-01 15 74317252 74317252 C T PML Missense_Mutation p.P413L 0.22 tolerated(0.39) benign(0.003) TCGA-BR-A4CS-01 15 75981657 75981657 C T CSPG4 Silent p.P583P 0.32 TCGA-BR-A4CS-01 15 86262343 86262343 T - AKAP13 Frame_Shift_Del p.L2017Pfs*4 0.09 TCGA-BR-A4CS-01 16 28619682 28619682 G C SULT1A1 Missense_Mutation p.A101G 0.16 deleterious(0.03) benign(0.005) TCGA-BR-A4CS-01 16 3586166 3586166 C T CLUAP1 Silent p.D379D 0.23 TCGA-BR-A4CS-01 16 55729245 55729245 G A SLC6A2 Missense_Mutation p.A360T 0.11 deleterious(0.04) benign(0.21) TCGA-BR-A4CS-01 16 57081493 57081494 - T NLRC5 Frame_Shift_Ins p.R1126Sfs*20 0.28 TCGA-BR-A4CS-01 16 84218553 84218553 G A TAF1C Silent p.T14T 0.46 TCGA-BR-A4CS-01 16 86565700 86565700 G T MTHFSD Missense_Mutation p.Q357K 0.12 tolerated(0.18) benign(0.098) TCGA-BR-A4CS-01 17 21318690 21318690 C A KCNJ12 Silent p.I12I 0.06 TCGA-BR-A4CS-01 17 29196362 29196362 G A ATAD5 Missense_Mutation p.G1137E 0.13 deleterious(0) probably_damaging(1) TCGA-BR-A4CS-01 17 33286636 33286636 G A CCT6B Silent p.T57T 0.14 TCGA-BR-A4CS-01 17 39341075 39341075 G T KRTAP4-1 Missense_Mutation p.S11Y 0.12 deleterious(0.04) benign(0.015) TCGA-BR-A4CS-01 17 45568405 45568405 G A MRPL45P2 RNA 0.11 TCGA-BR-A4CS-01 17 46670652 46670652 G A HOXB5 Silent p.T131T 0.20 TCGA-BR-A4CS-01 17 57737878 57737878 C T CLTC Missense_Mutation p.R366W 0.14 deleterious(0) probably_damaging(0.999) TCGA-BR-A4CS-01 17 7577556 7577556 C G TP53 Missense_Mutation p.C242S 0.33 deleterious(0) probably_damaging(1) TCGA-BR-A4CS-01 17 7611542 7611542 G A EFNB3 Missense_Mutation p.R130H 0.19 deleterious(0.03) benign(0.304) TCGA-BR-A4CS-01 17 78039385 78039385 G T CCDC40 Missense_Mutation p.R514S 0.17 tolerated(0.59) benign(0.004) TCGA-BR-A4CS-01 18 22807024 22807024 G A ZNF521 Silent p.C286C 0.14 TCGA-BR-A4CS-01 18 29039945 29039945 C T DSG3 Missense_Mutation p.R219C 0.19 deleterious(0.04) probably_damaging(0.984) TCGA-BR-A4CS-01 18 5890542 5890542 C T TMEM200C Silent p.S507S 0.25 TCGA-BR-A4CS-01 18 61468239 61468239 T C SERPINB7 Missense_Mutation p.L246P 0.25 deleterious(0) probably_damaging(0.984) TCGA-BR-A4CS-01 19 53086779 53086779 G A ZNF701 3'UTR 0.21 TCGA-BR-A4CS-01 19 58963045 58963045 C T ZNF324B 5'UTR 0.31 TCGA-BR-A4CS-01 19 8155087 8155087 G T FBN3 Nonsense_Mutation p.S2027* 0.21 TCGA-BR-A4CS-01 1 109265013 109265016 TCTT - FNDC7 Frame_Shift_Del p.S219Ffs*14 0.20 TCGA-BR-A4CS-01 1 118623787 118623787 C G SPAG17 Missense_Mutation p.D716H 0.04 deleterious(0.03) possibly_damaging(0.514) TCGA-BR-A4CS-01 1 147380425 147380425 G A GJA8 Missense_Mutation p.G115S 0.19 tolerated(0.87) benign(0.001) TCGA-BR-A4CS-01 1 152188410 152188410 G T HRNR Missense_Mutation p.Q1899K 0.02 unknown(0) TCGA-BR-A4CS-01 1 152278516 152278519 TGTC - FLG Frame_Shift_Del p.R2948Nfs*118 0.12 TCGA-BR-A4CS-01 1 158063171 158063171 C T KIRREL Missense_Mutation p.A505V 0.10 deleterious(0) possibly_damaging(0.523) TCGA-BR-A4CS-01 1 161928572 161928572 G T ATF6 3'UTR 0.18 TCGA-BR-A4CS-01 1 161928573 161928573 A T ATF6 3'UTR 0.18 TCGA-BR-A4CS-01 1 164761730 164761730 G C PBX1 Splice_Site p.X89_splice 0.15 TCGA-BR-A4CS-01 1 176668245 176668245 A C PAPPA2 Missense_Mutation p.D919A 0.05 deleterious(0) probably_damaging(1) TCGA-BR-A4CS-01 1 196695654 196695654 A G CFH Missense_Mutation p.E643G 0.20 tolerated(0.45) benign(0.003) TCGA-BR-A4CS-01 1 208201480 208201480 G C PLXNA2 Silent p.L1821L 0.12 TCGA-BR-A4CS-01 1 210015666 210015666 T A DIEXF Silent p.S514S 0.22 TCGA-BR-A4CS-01 1 212521751 212521752 TG - PPP2R5A Frame_Shift_Del p.L262Sfs*7 0.10 TCGA-BR-A4CS-01 1 220298662 220298662 C G IARS2 Missense_Mutation p.P575R 0.17 deleterious(0) probably_damaging(0.988) TCGA-BR-A4CS-01 1 235613601 235613603 GAG - B3GALNT2 In_Frame_Del p.P474del 0.11 TCGA-BR-A4CS-01 1 247902190 247902190 T G OR14K1 Missense_Mutation p.F92V 0.14 deleterious(0.01) benign(0.147) TCGA-BR-A4CS-01 1 29638252 29638252 G A PTPRU Missense_Mutation p.R1028H 0.17 deleterious(0.02) probably_damaging(1) TCGA-BR-A4CS-01 1 47280902 47280902 C T CYP4B1 Missense_Mutation p.R347C 0.11 tolerated(0.05) benign(0.006) TCGA-BR-A4CS-01 1 47366097 47366097 A G CYP4Z2P RNA 0.11 TCGA-BR-A4CS-01 1 70505052 70505052 G A LRRC7 Missense_Mutation p.G1144D 0.13 tolerated(0.21) benign(0.424) TCGA-BR-A4CS-01 1 74507414 74507414 C G LRRIQ3 Missense_Mutation p.E401Q 0.16 tolerated(0.14) benign(0.09) TCGA-BR-A4CS-01 20 24565546 24565546 C T SYNDIG1 Missense_Mutation p.R179W 0.09 deleterious(0) probably_damaging(1) TCGA-BR-A4CS-01 20 30449161 30449161 G A DUSP15 3'UTR 0.35 TCGA-BR-A4CS-01 20 30449248 30449248 G A DUSP15 Silent p.F222F 0.29 TCGA-BR-A4CS-01 20 30486296 30486296 G A TTLL9 Missense_Mutation p.R45Q 0.08 deleterious(0) probably_damaging(0.914) TCGA-BR-A4CS-01 20 3147537 3147537 C G LZTS3 Missense_Mutation p.K91N 0.12 tolerated(0.2) probably_damaging(0.95) TCGA-BR-A4CS-01 20 36641604 36641604 C A TTI1 Missense_Mutation p.L205F 0.08 deleterious(0.02) probably_damaging(0.935) TCGA-BR-A4CS-01 20 407987 407987 C A RBCK1 Missense_Mutation p.L354I 0.13 deleterious(0.01) probably_damaging(0.963) TCGA-BR-A4CS-01 20 43344038 43344038 G A WISP2 Missense_Mutation p.G3S 0.12 tolerated(0.19) possibly_damaging(0.476) TCGA-BR-A4CS-01 20 43726377 43726377 G C KCNS1 Missense_Mutation p.L346V 0.12 deleterious(0) probably_damaging(0.995) TCGA-BR-A4CS-01 20 56928380 56928380 G A RAB22A Missense_Mutation p.V84I 0.06 deleterious(0) possibly_damaging(0.512) TCGA-BR-A4CS-01 20 8696959 8696959 G A PLCB1 Silent p.G433G 0.05 TCGA-BR-A4CS-01 21 22656600 22656600 G T NCAM2 Missense_Mutation p.G73C 0.28 deleterious(0.02) possibly_damaging(0.867) TCGA-BR-A4CS-01 21 31914074 31914074 A C KRTAP19-6 Missense_Mutation p.C27G 0.22 tolerated_low_confidence(0.22) unknown(0) TCGA-BR-A4CS-01 21 34056362 34056362 A C SYNJ1 Missense_Mutation p.F435V 0.32 deleterious(0) probably_damaging(0.994) TCGA-BR-A4CS-01 21 47361643 47361643 G A PCBP3 3'UTR 0.26 TCGA-BR-A4CS-01 21 47767412 47767412 G A PCNT Missense_Mutation p.A340T 0.05 possibly_damaging(0.843) TCGA-BR-A4CS-01 22 22323012 22323012 G - TOP3B Frame_Shift_Del p.Y240Tfs*23 0.21 TCGA-BR-A4CS-01 22 24037291 24037291 G A RGL4 Intron 0.18 TCGA-BR-A4CS-01 22 46760030 46760030 C T CELSR1 Silent p.T2966T 0.13 TCGA-BR-A4CS-01 22 50216701 50216701 G T BRD1 Missense_Mutation p.S422Y 0.15 deleterious(0.01) possibly_damaging(0.702) TCGA-BR-A4CS-01 22 50903026 50903026 G A SBF1 Nonsense_Mutation p.Q525* 0.21 TCGA-BR-A4CS-01 2 116101431 116101431 G C DPP10 Missense_Mutation p.E76Q 0.28 deleterious(0.03) benign(0.094) TCGA-BR-A4CS-01 2 127864487 127864487 C G BIN1 Silent p.A11A 0.20 TCGA-BR-A4CS-01 2 128408831 128408831 G T GPR17 Missense_Mutation p.Q202H 0.34 tolerated(0.06) possibly_damaging(0.866) TCGA-BR-A4CS-01 2 133540880 133540880 C T NCKAP5 Silent p.G1168G 0.35 TCGA-BR-A4CS-01 2 133547605 133547605 G A NCKAP5 Silent p.L361L 0.26 TCGA-BR-A4CS-01 2 152369283 152369283 G A NEB Silent p.I7770I 0.14 TCGA-BR-A4CS-01 2 179600641 179600641 G A TTN Silent p.S4844S 0.34 TCGA-BR-A4CS-01 2 198570228 198570228 C T MARS2 Silent p.S33S 0.06 TCGA-BR-A4CS-01 2 236949436 236949436 G A AGAP1 Silent p.S614S 0.05 TCGA-BR-A4CS-01 2 32289152 32289152 C G SPAST Silent p.R84R 0.47 TCGA-BR-A4CS-01 2 32362007 32362007 A G SPAST Silent p.L461L 0.31 TCGA-BR-A4CS-01 2 73679370 73679370 C A ALMS1 Missense_Mutation p.H1905N 0.08 possibly_damaging(0.649) TCGA-BR-A4CS-01 3 124492671 124492671 G C ITGB5 Missense_Mutation p.C594W 0.16 deleterious(0) probably_damaging(0.995) TCGA-BR-A4CS-01 3 131404727 131404727 G A CPNE4 Nonsense_Mutation p.R195* 0.12 TCGA-BR-A4CS-01 3 132166238 132166238 G A DNAJC13 Missense_Mutation p.R73H 0.15 deleterious(0.01) possibly_damaging(0.858) TCGA-BR-A4CS-01 3 136117672 136117672 C G STAG1 Splice_Site p.X733_splice 0.09 TCGA-BR-A4CS-01 3 143185988 143185988 C T SLC9A9 Missense_Mutation p.E454K 0.18 tolerated(0.25) benign(0.009) TCGA-BR-A4CS-01 3 46062775 46062775 C T XCR1 Missense_Mutation p.R222H 0.21 deleterious(0) probably_damaging(0.999) TCGA-BR-A4CS-01 3 51749182 51749182 C T GRM2 Missense_Mutation p.R465C 0.21 deleterious(0.05) benign(0.009) TCGA-BR-A4CS-01 3 58134046 58134046 C T FLNB Nonsense_Mutation p.R1979* 0.14 TCGA-BR-A4CS-01 3 69101186 69101186 A G TMF1 Missense_Mutation p.S18P 0.20 deleterious_low_confidence(0) probably_damaging(0.912) TCGA-BR-A4CS-01 3 87018199 87018199 C A VGLL3 Missense_Mutation p.A160S 0.12 tolerated(1) benign(0.013) TCGA-BR-A4CS-01 3 99513916 99513916 G A COL8A1 Missense_Mutation p.E391K 0.26 tolerated(0.66) unknown(0) TCGA-BR-A4CS-01 4 145568092 145568092 C T HHIP Missense_Mutation p.R89C 0.25 deleterious(0) possibly_damaging(0.536) TCGA-BR-A4CS-01 4 183600907 183600907 C T TENM3 Missense_Mutation p.A472V 0.20 tolerated(0.39) benign(0.004) TCGA-BR-A4CS-01 4 183721189 183721189 C T TENM3 Silent p.D2595D 0.21 TCGA-BR-A4CS-01 4 189068199 189068199 C G TRIML1 Missense_Mutation p.D360E 0.15 tolerated(0.73) probably_damaging(0.999) TCGA-BR-A4CS-01 4 55594074 55594074 C T KIT Silent p.V620V 0.21 TCGA-BR-A4CS-01 4 90170778 90170778 A G GPRIN3 Missense_Mutation p.S162P 0.21 tolerated(0.13) benign(0.037) TCGA-BR-A4CS-01 4 96137357 96137357 T C UNC5C Missense_Mutation p.S551G 0.19 deleterious(0.04) benign(0.206) TCGA-BR-A4CS-01 5 101585438 101585438 C T SLCO4C1 Silent p.S508S 0.13 TCGA-BR-A4CS-01 5 137588726 137588726 C G GFRA3 Missense_Mutation p.R378S 0.19 deleterious(0.02) benign(0.045) TCGA-BR-A4CS-01 5 140730590 140730590 G T PCDHGB1 Nonsense_Mutation p.G255* 0.21 TCGA-BR-A4CS-01 5 160047768 160047768 C A ATP10B Missense_Mutation p.V668L 0.19 tolerated(1) benign(0.006) TCGA-BR-A4CS-01 5 21751951 21751951 T G CDH12 Missense_Mutation p.E760D 0.27 tolerated(1) benign(0.043) TCGA-BR-A4CS-01 5 24488107 24488107 G T CDH10 Missense_Mutation p.P678T 0.20 tolerated(0.08) probably_damaging(0.995) TCGA-BR-A4CS-01 5 26886139 26886139 T G CDH9 Missense_Mutation p.K522N 0.23 deleterious(0.01) possibly_damaging(0.562) TCGA-BR-A4CS-01 5 66480391 66480391 C A CD180 Nonsense_Mutation p.E94* 0.24 TCGA-BR-A4CS-01 5 79027991 79027991 G A CMYA5 Missense_Mutation p.V1135M 0.20 benign(0.003) TCGA-BR-A4CS-01 5 79285047 79285047 T C MTX3 Silent p.E22E 0.44 TCGA-BR-A4CS-01 6 152652593 152652593 G A SYNE1 Silent p.D4409D 0.23 TCGA-BR-A4CS-01 6 161027567 161027567 A G LPA Silent p.T909T 0.13 TCGA-BR-A4CS-01 6 170064343 170064343 G A WDR27 Missense_Mutation p.R275C 0.18 tolerated(1) benign(0.001) TCGA-BR-A4CS-01 6 30863265 30863265 C T DDR1 Missense_Mutation p.A533V 0.21 tolerated(0.25) benign(0.112) TCGA-BR-A4CS-01 6 31236950 31236950 G C HLA-C Missense_Mutation p.A366G 0.16 tolerated_low_confidence(0.58) probably_damaging(0.989) TCGA-BR-A4CS-01 6 32156075 32156075 T - PBX2 Frame_Shift_Del p.I168Sfs*24 0.20 TCGA-BR-A4CS-01 6 34029747 34029747 G A GRM4 Silent p.F265F 0.14 TCGA-BR-A4CS-01 6 35086242 35086242 A C TCP11 Missense_Mutation p.V452G 0.27 deleterious(0.04) possibly_damaging(0.821) TCGA-BR-A4CS-01 6 6167737 6167737 G T F13A1 Missense_Mutation p.A621D 0.17 deleterious(0) probably_damaging(0.957) TCGA-BR-A4CS-01 6 66205370 66205370 C T EYS 5'UTR 0.23 TCGA-BR-A4CS-01 7 101559469 101559469 C T CUX1 Silent p.I46I 0.20 TCGA-BR-A4CS-01 7 126542634 126542634 G C GRM8 Nonsense_Mutation p.S373* 0.21 TCGA-BR-A4CS-01 7 127669591 127669591 C T LRRC4 Missense_Mutation p.R368Q 0.25 tolerated(0.55) benign(0.174) TCGA-BR-A4CS-01 7 148768958 148768958 G T ZNF786 Silent p.G302G 0.11 TCGA-BR-A4CS-01 7 21939738 21939738 G T DNAH11 Missense_Mutation p.G4442C 0.56 probably_damaging(1) TCGA-BR-A4CS-01 7 27238898 27238898 C T HOXA13 Missense_Mutation p.E267K 0.11 deleterious(0.01) possibly_damaging(0.794) TCGA-BR-A4CS-01 7 38791835 38791835 A T VPS41 Missense_Mutation p.Y623N 0.08 deleterious(0) possibly_damaging(0.903) TCGA-BR-A4CS-01 7 49842380 49842380 C T VWC2 Missense_Mutation p.T257M 0.50 tolerated(0.07) probably_damaging(0.999) TCGA-BR-A4CS-01 7 62752411 62752411 G T ZNF733P RNA 0.14 TCGA-BR-A4CS-01 8 110520009 110520009 A T PKHD1L1 Missense_Mutation p.E3704D 0.04 deleterious(0.01) probably_damaging(0.987) TCGA-BR-A4CS-01 8 110535556 110535556 C G PKHD1L1 Missense_Mutation p.T4142R 0.04 deleterious(0.01) probably_damaging(0.995) TCGA-BR-A4CS-01 8 133764099 133764099 G A TMEM71 Silent p.C82C 0.10 TCGA-BR-A4CS-01 8 51621478 51621478 T C SNTG1 Silent p.H408H 0.19 TCGA-BR-A4CS-01 8 53853152 53853152 C T NPBWR1 Missense_Mutation p.R229W 0.34 deleterious(0.02) probably_damaging(0.981) TCGA-BR-A4CS-01 8 72755963 72755963 G C MSC Missense_Mutation p.L151V 0.09 deleterious(0) probably_damaging(0.999) TCGA-BR-A4CS-01 8 87125937 87125937 G T ATP6V0D2 Splice_Site p.X44_splice 0.03 TCGA-BR-A4CS-01 8 92364079 92364079 C A SLC26A7 Silent p.I394I 0.09 TCGA-BR-A4CS-01 9 113233694 113233694 T - SVEP1 Frame_Shift_Del p.K983Rfs*12 0.32 TCGA-BR-A4CS-01 9 116982078 116982078 C A COL27A1 Missense_Mutation p.P792H 0.12 unknown(0) TCGA-BR-A4CS-01 9 117848440 117848440 C T TNC Missense_Mutation p.G524S 0.26 deleterious(0) probably_damaging(1) TCGA-BR-A4CS-01 9 124329506 124329506 C T DAB2IP Silent p.Y13Y 0.20 TCGA-BR-A4CS-01 9 43624824 43624824 T G SPATA31A6 Missense_Mutation p.K1288T 0.30 deleterious(0) probably_damaging(0.917) TCGA-BR-A4CS-01 9 74865740 74865740 C T GDA 3'Flank 0.15 TCGA-BR-A4CS-01 X 100513426 100513426 G A DRP2 Missense_Mutation p.R840H 0.57 deleterious(0) probably_damaging(0.997) TCGA-BR-A4CS-01 X 113965892 113965892 C A HTR2C Silent p.I75I 0.23 TCGA-BR-A4CS-01 X 14861623 14861623 A C FANCB 3'UTR 0.12 TCGA-BR-A4CS-01 X 150869551 150869551 C G PRRG3 3'UTR 0.38 TCGA-BR-A4CS-01 X 18192243 18192243 C A BEND2 Nonsense_Mutation p.E630* 0.35 TCGA-BR-A4CS-01 X 48887694 48887694 C T TFE3 Missense_Mutation p.S568N 0.39 deleterious(0) possibly_damaging(0.517) TCGA-BR-A4CS-01 X 53590779 53590779 C T HUWE1 Missense_Mutation p.E2345K 0.36 possibly_damaging(0.543) TCGA-BR-A4CS-01 X 77912455 77912455 C T ZCCHC5 3'UTR 0.30 TCGA-BR-A4CS-01 X 79978259 79978259 C T BRWD3 Missense_Mutation p.D560N 0.09 deleterious(0) probably_damaging(0.998) TCGA-BR-A4CS-01 X 84526509 84526509 T C ZNF711 Missense_Mutation p.F654S 0.18 deleterious(0.02) probably_damaging(0.998) TCGA-BR-A4CS-01 X 99662933 99662933 G A PCDH19 Silent p.T221T 0.29 TCGA-BR-A4IU-01 10 43612057 43612057 G A RET Missense_Mutation p.R721Q 0.11 deleterious(0) probably_damaging(0.994) TCGA-BR-A4IU-01 10 79581291 79581291 G A DLG5 Missense_Mutation p.T984I 0.07 deleterious(0.03) benign(0.016) TCGA-BR-A4IU-01 10 84498378 84498378 G A NRG3 Silent p.P333P 0.21 TCGA-BR-A4IU-01 10 87487712 87487712 A G GRID1 Missense_Mutation p.L478P 0.11 deleterious(0) probably_damaging(0.981) TCGA-BR-A4IU-01 11 100922231 100922231 A T PGR Missense_Mutation p.F761I 0.16 deleterious(0) probably_damaging(0.999) TCGA-BR-A4IU-01 11 114121233 114121233 G A ZBTB16 Missense_Mutation p.D660N 0.09 deleterious(0) probably_damaging(0.996) TCGA-BR-A4IU-01 11 1619306 1619306 G A KRTAP5-2 Missense_Mutation p.P59S 0.06 deleterious_low_confidence(0) unknown(0) TCGA-BR-A4IU-01 11 5275655 5275655 A G HBG2 Missense_Mutation p.V61A 0.11 deleterious(0.01) probably_damaging(0.966) TCGA-BR-A4IU-01 15 27114359 27114359 C T GABRA5 5'UTR 0.20 TCGA-BR-A4IU-01 17 7578457 7578457 C T TP53 Missense_Mutation p.R158H 0.09 tolerated(0.1) benign(0.438) TCGA-BR-A4IU-01 19 42490135 42490135 G A ATP1A3 Missense_Mutation p.R176W 0.12 deleterious(0) probably_damaging(0.989) TCGA-BR-A4IU-01 1 158606544 158606544 A C SPTA1 Missense_Mutation p.L1733V 0.15 tolerated(0.08) probably_damaging(0.999) TCGA-BR-A4IU-01 1 161682978 161682978 G A FCRLA Silent p.P319P 0.15 TCGA-BR-A4IU-01 1 248112415 248112415 C A OR2L8 Missense_Mutation p.H86N 0.12 tolerated(0.3) benign(0) TCGA-BR-A4IU-01 1 33402454 33402454 C T RNF19B Missense_Mutation p.E718K 0.09 deleterious_low_confidence(0.04) possibly_damaging(0.905) TCGA-BR-A4IU-01 20 20257982 20257982 C T C20orf26 Silent p.A892A 0.23 TCGA-BR-A4IU-01 20 9438094 9438095 AG - PLCB4 Frame_Shift_Del p.E999Nfs*13 0.15 TCGA-BR-A4IU-01 4 159493865 159493865 G T RXFP1 Missense_Mutation p.G22V 0.13 tolerated(0.18) benign(0.004) TCGA-BR-A4IU-01 4 80328138 80328138 T C GK2 Missense_Mutation p.E406G 0.07 deleterious(0) probably_damaging(0.999) TCGA-BR-A4IU-01 5 140751697 140751697 C T PCDHGB3 Missense_Mutation p.P579L 0.06 deleterious(0.01) probably_damaging(0.993) TCGA-BR-A4IU-01 5 140810837 140810837 G A PCDHGA12 Missense_Mutation p.E171K 0.25 tolerated_low_confidence(0.25) benign(0.021) TCGA-BR-A4IU-01 6 106555018 106555018 C T PRDM1 Missense_Mutation p.A712V 0.07 tolerated(1) benign(0.001) TCGA-BR-A4IU-01 6 43323429 43323429 G A ZNF318 Missense_Mutation p.A548V 0.05 benign(0.005) TCGA-BR-A4IU-01 7 104715201 104715201 T C KMT2E Missense_Mutation p.V223A 0.24 tolerated(0.15) benign(0.153) TCGA-BR-A4IU-01 7 36459913 36459913 C A ANLN Missense_Mutation p.L669I 0.09 deleterious(0) probably_damaging(0.984) TCGA-BR-A4IU-01 7 71175811 71175811 T C WBSCR17 Silent p.P522P 0.07 TCGA-BR-A4IU-01 8 134108585 134108585 G A TG Missense_Mutation p.D2514N 0.05 deleterious(0) probably_damaging(0.997) TCGA-BR-A4IU-01 X 118724855 118724855 G A NKRF Missense_Mutation p.T193M 0.11 deleterious(0.02) benign(0.005) TCGA-BR-A4IU-01 X 17744273 17744273 G A NHS Missense_Mutation p.V662M 0.06 tolerated(0.54) possibly_damaging(0.787) TCGA-BR-A4IV-01 11 102666013 102666013 T G MMP1 Missense_Mutation p.Q264P 0.05 tolerated(0.55) benign(0) TCGA-BR-A4IV-01 11 120996063 120996063 A C TECTA Missense_Mutation p.K419T 0.05 deleterious(0.01) benign(0.224) TCGA-BR-A4IV-01 11 6417100 6417100 G A APBB1 Silent p.A625A 0.04 TCGA-BR-A4IV-01 12 5153813 5153813 G A KCNA5 Missense_Mutation p.R167H 0.05 deleterious(0) probably_damaging(0.999) TCGA-BR-A4IV-01 13 36888405 36888405 T C SPG20 Missense_Mutation p.K481R 0.03 tolerated(0.15) benign(0.401) TCGA-BR-A4IV-01 13 84455655 84455655 C A SLITRK1 5'UTR 0.05 TCGA-BR-A4IV-01 14 21960984 21960984 C T TOX4 Silent p.G403G 0.03 TCGA-BR-A4IV-01 14 24566314 24566314 C T PCK2 Silent p.G81G 0.07 TCGA-BR-A4IV-01 14 59113582 59113582 C A DACT1 Missense_Mutation p.S747R 0.04 deleterious(0) probably_damaging(0.999) TCGA-BR-A4IV-01 14 74825069 74825069 G A VRTN Missense_Mutation p.R528H 0.03 deleterious(0.01) probably_damaging(0.95) TCGA-BR-A4IV-01 16 67321852 67321852 G A PLEKHG4 Missense_Mutation p.R1052Q 0.05 tolerated(0.19) benign(0.004) TCGA-BR-A4IV-01 16 68844172 68844172 G T CDH1 Missense_Mutation p.D254Y 0.07 deleterious(0) probably_damaging(1) TCGA-BR-A4IV-01 16 68857421 68857421 T C CDH1 Missense_Mutation p.C686R 0.04 deleterious(0) probably_damaging(1) TCGA-BR-A4IV-01 17 7907247 7907247 G A GUCY2D Missense_Mutation p.G267S 0.05 deleterious(0.01) possibly_damaging(0.527) TCGA-BR-A4IV-01 18 10671475 10671475 T A PIEZO2 3'Flank 0.10 TCGA-BR-A4IV-01 19 24309936 24309936 C A ZNF254 Nonsense_Mutation p.Y378* 0.10 TCGA-BR-A4IV-01 19 38851392 38851392 C G CATSPERG Missense_Mutation p.Q597E 0.08 tolerated(1) benign(0.092) TCGA-BR-A4IV-01 1 117618069 117618069 G T TTF2 Missense_Mutation p.W288L 0.05 tolerated(0.84) benign(0.001) TCGA-BR-A4IV-01 1 156510514 156510514 G A IQGAP3 Missense_Mutation p.R909W 0.06 deleterious(0) probably_damaging(0.955) TCGA-BR-A4IV-01 1 158435617 158435617 A C OR10K1 Missense_Mutation p.K89T 0.05 tolerated(0.55) possibly_damaging(0.557) TCGA-BR-A4IV-01 1 158622374 158622374 T A SPTA1 Missense_Mutation p.L1086F 0.06 tolerated(0.7) benign(0.02) TCGA-BR-A4IV-01 1 204124212 204124212 A T REN Missense_Mutation p.F385I 0.11 deleterious(0) probably_damaging(0.999) TCGA-BR-A4IV-01 20 1099450 1099450 G T PSMF1 Missense_Mutation p.A12S 0.05 tolerated(0.54) benign(0.009) TCGA-BR-A4IV-01 22 22673302 22673302 C T IGLV5-52 Missense_Mutation p.S32F 0.03 deleterious(0.02) benign(0.068) TCGA-BR-A4IV-01 22 31608339 31608339 G A LIMK2 5'UTR 0.17 TCGA-BR-A4IV-01 2 179613105 179613105 T A TTN Intron 0.06 TCGA-BR-A4IV-01 2 239005449 239005449 G T SCLY Silent p.V380V 0.21 TCGA-BR-A4IV-01 3 49405959 49405959 G T RHOA Missense_Mutation p.T60K 0.11 deleterious(0) probably_damaging(0.942) TCGA-BR-A4IV-01 3 64085069 64085069 G A PRICKLE2 Silent p.S731S 0.04 TCGA-BR-A4IV-01 4 20618693 20618693 C T SLIT2 Silent p.C1336C 0.06 TCGA-BR-A4IV-01 4 55561758 55561758 G A KIT Missense_Mutation p.V50M 0.05 tolerated(0.26) possibly_damaging(0.592) TCGA-BR-A4IV-01 5 140182645 140182645 G A PCDHA3 Silent p.P621P 0.06 TCGA-BR-A4IV-01 7 21908603 21908603 C T DNAH11 Silent p.I3994I 0.08 TCGA-BR-A4IV-01 7 37927910 37927910 C T NME8 Missense_Mutation p.P427S 0.06 tolerated(0.07) probably_damaging(0.919) TCGA-BR-A4IV-01 7 53104090 53104090 C A POM121L12 Silent p.P242P 0.10 TCGA-BR-A4IV-01 8 122627197 122627197 G A HAS2 Nonsense_Mutation p.Q271* 0.07 TCGA-BR-A4IV-01 8 61192405 61192405 A T CA8 Missense_Mutation p.N45K 0.09 tolerated(0.17) benign(0.284) TCGA-BR-A4IV-01 9 121930039 121930039 A C BRINP1 Missense_Mutation p.F537V 0.08 tolerated(0.28) benign(0.027) TCGA-BR-A4IV-01 9 130496702 130496702 C T TOR2A Missense_Mutation p.G98D 0.07 deleterious(0) probably_damaging(1) TCGA-BR-A4IV-01 X 23019989 23019989 G C DDX53 Missense_Mutation p.K605N 0.10 tolerated(0.12) benign(0.039) TCGA-BR-A4IY-01 10 103904794 103904794 A G PPRC1 Missense_Mutation p.Q1209R 0.18 deleterious(0) possibly_damaging(0.874) TCGA-BR-A4IY-01 10 118443393 118443393 C G HSPA12A Missense_Mutation p.K248N 0.20 deleterious(0.01) benign(0.087) TCGA-BR-A4IY-01 10 127461231 127461231 G A MMP21 Silent p.D262D 0.21 TCGA-BR-A4IY-01 10 267156 267156 G C ZMYND11 Missense_Mutation p.D100H 0.15 deleterious(0) possibly_damaging(0.557) TCGA-BR-A4IY-01 10 51225645 51225645 G A AGAP8 Missense_Mutation p.S446L 0.21 deleterious(0.03) benign(0.167) TCGA-BR-A4IY-01 10 5808574 5808574 G A GDI2 Missense_Mutation p.A340V 0.06 tolerated(0.16) benign(0.039) TCGA-BR-A4IY-01 10 81317845 81317845 G C SFTPA2 Silent p.L111L 0.06 TCGA-BR-A4IY-01 10 82033463 82033463 G T MAT1A 3'UTR 0.14 TCGA-BR-A4IY-01 11 117352699 117352699 G A DSCAML1 Silent p.D906D 0.11 TCGA-BR-A4IY-01 11 2189141 2189141 C T TH Missense_Mutation p.R231H 0.12 deleterious(0) probably_damaging(0.966) TCGA-BR-A4IY-01 11 4626773 4626773 C A TRIM68 5'UTR 0.14 TCGA-BR-A4IY-01 11 46407613 46407613 C T CHRM4 Silent p.A165A 0.21 TCGA-BR-A4IY-01 11 47296606 47296606 C G MADD Missense_Mutation p.F185L 0.17 deleterious(0.03) probably_damaging(0.999) TCGA-BR-A4IY-01 11 47494716 47494716 C A CELF1 Missense_Mutation p.Q445H 0.07 deleterious(0.03) probably_damaging(0.979) TCGA-BR-A4IY-01 11 56043183 56043183 G A OR5T1 Missense_Mutation p.M23I 0.06 tolerated(0.18) benign(0.002) TCGA-BR-A4IY-01 11 6265493 6265493 C T CNGA4 Missense_Mutation p.R528C 0.31 deleterious(0) probably_damaging(0.998) TCGA-BR-A4IY-01 11 65620233 65620233 G C SNX32 Missense_Mutation p.E349Q 0.11 deleterious(0.03) possibly_damaging(0.781) TCGA-BR-A4IY-01 11 66039636 66039636 G A RAB1B Silent p.T32T 0.12 TCGA-BR-A4IY-01 11 66384208 66384208 G A RBM14-RBM4 Missense_Mutation p.G6D 0.19 deleterious(0) probably_damaging(1) TCGA-BR-A4IY-01 11 72299876 72299876 T A PDE2A Missense_Mutation p.D341V 0.12 tolerated(0.18) benign(0.026) TCGA-BR-A4IY-01 11 72945522 72945522 C A P2RY2 Nonsense_Mutation p.C106* 0.33 TCGA-BR-A4IY-01 11 73021583 73021583 G T ARHGEF17 Nonsense_Mutation p.E634* 0.15 TCGA-BR-A4IY-01 11 76853839 76853839 C A MYO7A Missense_Mutation p.Q35K 0.12 tolerated(0.64) possibly_damaging(0.89) TCGA-BR-A4IY-01 11 7722879 7722879 C T OVCH2 Missense_Mutation p.A235T 0.17 deleterious(0) probably_damaging(0.999) TCGA-BR-A4IY-01 12 108029147 108029147 G A BTBD11 Missense_Mutation p.R906Q 0.18 tolerated(0.56) possibly_damaging(0.89) TCGA-BR-A4IY-01 12 109693967 109693981 CGGATTCTTTGACCA - ACACB In_Frame_Del p.F2065_G2069del 0.15 TCGA-BR-A4IY-01 12 121125252 121125252 G A MLEC Silent p.A51A 0.11 TCGA-BR-A4IY-01 12 13716833 13716833 C T GRIN2B Silent p.P1113P 0.21 TCGA-BR-A4IY-01 12 32491848 32491848 C G BICD1 Missense_Mutation p.S900C 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.894) TCGA-BR-A4IY-01 12 39047739 39047739 G T CPNE8 Nonsense_Mutation p.S547* 0.14 TCGA-BR-A4IY-01 12 48368564 48368564 C A COL2A1 Missense_Mutation p.C1323F 0.13 unknown(0) TCGA-BR-A4IY-01 12 49743369 49743369 G A DNAJC22 Silent p.L238L 0.17 TCGA-BR-A4IY-01 12 64202853 64202853 T G TMEM5 Nonsense_Mutation p.L438* 0.13 TCGA-BR-A4IY-01 12 8211383 8211383 G T C3AR1 Missense_Mutation p.H467N 0.12 tolerated(0.09) benign(0) TCGA-BR-A4IY-01 12 89996883 89996883 T A ATP2B1 Silent p.V999V 0.12 TCGA-BR-A4IY-01 13 19999107 19999107 C G TPTE2 Silent p.T482T 0.12 TCGA-BR-A4IY-01 13 27645260 27645260 G A USP12 Missense_Mutation p.A320V 0.16 deleterious(0.02) benign(0.14) TCGA-BR-A4IY-01 13 46725141 46725141 A T LCP1 Missense_Mutation p.L271Q 0.22 deleterious(0) probably_damaging(0.994) TCGA-BR-A4IY-01 14 100793683 100793683 G A SLC25A47 Silent p.S101S 0.13 TCGA-BR-A4IY-01 14 24909904 24909904 G A SDR39U1 Intron 0.12 TCGA-BR-A4IY-01 14 52735280 52735280 G A PTGDR Missense_Mutation p.G250R 0.18 tolerated(0.67) benign(0.002) TCGA-BR-A4IY-01 14 92949082 92949082 C T SLC24A4 Silent p.C438C 0.18 TCGA-BR-A4IY-01 15 74708915 74708915 C T SEMA7A Splice_Site p.X267_splice 0.07 TCGA-BR-A4IY-01 15 79080681 79080681 C G ADAMTS7 Missense_Mutation p.C405S 0.14 deleterious(0) probably_damaging(1) TCGA-BR-A4IY-01 15 79083543 79083543 G A ADAMTS7 Missense_Mutation p.P281L 0.15 deleterious(0) probably_damaging(0.983) TCGA-BR-A4IY-01 15 90628287 90628287 C T IDH2 Nonsense_Mutation p.W375* 0.13 TCGA-BR-A4IY-01 16 12142284 12142284 G C SNX29 Missense_Mutation p.Q185H 0.13 deleterious(0.03) probably_damaging(0.912) TCGA-BR-A4IY-01 16 1400843 1400843 C G TSR3 Missense_Mutation p.C164S 0.15 deleterious(0) probably_damaging(0.98) TCGA-BR-A4IY-01 16 29810320 29810320 T A KIF22 Missense_Mutation p.S192T 0.13 tolerated(0.07) possibly_damaging(0.559) TCGA-BR-A4IY-01 16 30997777 30997777 C A HSD3B7 Missense_Mutation p.T119N 0.26 tolerated(0.36) benign(0.001) TCGA-BR-A4IY-01 16 54318990 54318990 A G IRX3 Missense_Mutation p.L268P 0.19 tolerated(0.28) benign(0.164) TCGA-BR-A4IY-01 16 57787375 57787375 C T KATNB1 Missense_Mutation p.A374V 0.07 deleterious(0.04) probably_damaging(0.997) TCGA-BR-A4IY-01 16 61687703 61687703 T A CDH8 Missense_Mutation p.T737S 0.11 tolerated(0.99) benign(0.135) TCGA-BR-A4IY-01 16 65022100 65022100 G A CDH11 Missense_Mutation p.T320M 0.19 deleterious(0.01) probably_damaging(0.934) TCGA-BR-A4IY-01 16 79245707 79245707 C A WWOX 3'UTR 0.09 TCGA-BR-A4IY-01 17 12921103 12921103 G C ELAC2 Silent p.G54G 0.23 TCGA-BR-A4IY-01 17 27237335 27237335 C T PHF12 Silent p.Q756Q 0.26 TCGA-BR-A4IY-01 17 36093716 36093716 C G HNF1B Missense_Mutation p.G215R 0.14 deleterious(0.01) possibly_damaging(0.821) TCGA-BR-A4IY-01 17 3664729 3664729 C T ITGAE Missense_Mutation p.R134H 0.04 tolerated(0.24) benign(0.004) TCGA-BR-A4IY-01 17 3854671 3854671 C A ATP2A3 Nonsense_Mutation p.E113* 0.07 TCGA-BR-A4IY-01 17 38910169 38910169 C A KRT25 Missense_Mutation p.E204D 0.16 deleterious(0.01) probably_damaging(0.993) TCGA-BR-A4IY-01 17 40030139 40030139 C - ACLY Frame_Shift_Del p.G856Afs*39 0.18 TCGA-BR-A4IY-01 17 40330819 40330819 C T KCNH4 Missense_Mutation p.R101H 0.07 deleterious(0.02) benign(0.29) TCGA-BR-A4IY-01 17 4455258 4455258 G C MYBBP1A Missense_Mutation p.P314A 0.18 deleterious(0.01) benign(0.39) TCGA-BR-A4IY-01 17 6610071 6610071 G T SLC13A5 Silent p.T86T 0.28 TCGA-BR-A4IY-01 17 6683160 6683160 C T FBXO39 5'UTR 0.24 TCGA-BR-A4IY-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.30 tolerated(0.11) benign(0.308) TCGA-BR-A4IY-01 19 10415752 10415752 A T ZGLP1 3'UTR 0.36 TCGA-BR-A4IY-01 19 11942980 11942980 A G ZNF440 Missense_Mutation p.H330R 0.11 deleterious(0) possibly_damaging(0.877) TCGA-BR-A4IY-01 19 12692195 12692195 C T ZNF490 Missense_Mutation p.A232T 0.20 tolerated(0.58) benign(0.026) TCGA-BR-A4IY-01 19 17631842 17631842 G A PGLS Silent p.A243A 0.16 TCGA-BR-A4IY-01 19 19626080 19626080 C T TSSK6 Missense_Mutation p.V53I 0.15 tolerated(0.2) benign(0.141) TCGA-BR-A4IY-01 19 36237375 36237375 A T PSENEN Silent p.R39R 0.17 TCGA-BR-A4IY-01 19 36582142 36582142 G A WDR62 Missense_Mutation p.C692Y 0.20 deleterious(0) probably_damaging(0.997) TCGA-BR-A4IY-01 19 37005417 37005417 G C ZNF260 Missense_Mutation p.H242D 0.04 deleterious(0) probably_damaging(0.951) TCGA-BR-A4IY-01 19 37880808 37880808 T A ZNF527 3'UTR 0.13 TCGA-BR-A4IY-01 19 39306978 39306997 GCCAGCTCGTTGACCAGGCT - ECH1 Splice_Site p.X220_splice 0.14 TCGA-BR-A4IY-01 19 43414945 43414945 G A PSG6 Missense_Mutation p.R165C 0.03 deleterious(0.04) possibly_damaging(0.631) TCGA-BR-A4IY-01 19 46281065 46281065 C T DMPK Missense_Mutation p.G258S 0.04 tolerated(0.17) benign(0.091) TCGA-BR-A4IY-01 19 47845117 47845117 G T C5AR2 3'UTR 0.50 TCGA-BR-A4IY-01 19 47856911 47856911 G A DHX34 Silent p.A208A 0.32 TCGA-BR-A4IY-01 19 50149403 50149403 C T SCAF1 Missense_Mutation p.R69W 0.30 unknown(0) TCGA-BR-A4IY-01 19 51499377 51499377 C T KLK8 Missense_Mutation p.V286I 0.18 deleterious(0.02) benign(0.185) TCGA-BR-A4IY-01 19 53116897 53116897 G A ZNF83 Silent p.H307H 0.05 TCGA-BR-A4IY-01 19 53270700 53270700 G A ZNF600 Silent p.I103I 0.16 TCGA-BR-A4IY-01 19 56133358 56133358 C T ZNF784 Missense_Mutation p.R244H 0.19 deleterious(0) probably_damaging(0.998) TCGA-BR-A4IY-01 1 151372048 151372048 T C PSMB4 5'UTR 0.19 TCGA-BR-A4IY-01 1 151785769 151785769 G A RORC Missense_Mutation p.R374C 0.16 deleterious(0) benign(0.01) TCGA-BR-A4IY-01 1 153947112 153947112 G C JTB 3'UTR 0.16 TCGA-BR-A4IY-01 1 155209829 155209829 G A GBA Missense_Mutation p.S52L 0.17 tolerated(0.07) possibly_damaging(0.728) TCGA-BR-A4IY-01 1 15987376 15987376 G C RSC1A1 Missense_Mutation p.C338S 0.05 tolerated(0.48) benign(0.023) TCGA-BR-A4IY-01 1 16907975 16907975 T C NBPF1 Missense_Mutation p.D440G 0.04 tolerated(0.1) probably_damaging(0.997) TCGA-BR-A4IY-01 1 176525566 176525566 G C PAPPA2 Missense_Mutation p.E36D 0.07 tolerated_low_confidence(0.08) benign(0) TCGA-BR-A4IY-01 1 186099205 186099205 A T HMCN1 Nonsense_Mutation p.K4338* 0.06 TCGA-BR-A4IY-01 1 193038590 193038590 A C TROVE2 Missense_Mutation p.K136Q 0.22 deleterious(0.04) benign(0.039) TCGA-BR-A4IY-01 1 202850310 202850310 G A RABIF Silent p.D56D 0.19 TCGA-BR-A4IY-01 1 215793440 215793440 C T KCTD3 Missense_Mutation p.T643I 0.06 deleterious_low_confidence(0.02) possibly_damaging(0.588) TCGA-BR-A4IY-01 1 220335565 220335565 G C RAB3GAP2 Missense_Mutation p.S1067C 0.10 deleterious(0) probably_damaging(0.991) TCGA-BR-A4IY-01 1 228598776 228598776 C T TRIM17 Silent p.T209T 0.09 TCGA-BR-A4IY-01 1 248059868 248059868 C A OR2W3 3'UTR 0.21 TCGA-BR-A4IY-01 1 24861836 24861836 G A RCAN3 3'UTR 0.23 TCGA-BR-A4IY-01 1 28477276 28477276 G T PTAFR Missense_Mutation p.P86H 0.20 tolerated(0.05) benign(0.202) TCGA-BR-A4IY-01 1 32800283 32800285 TCT - MARCKSL1 In_Frame_Del p.E168del 0.41 TCGA-BR-A4IY-01 1 6202385 6202385 G T CHD5 Missense_Mutation p.H747N 0.18 deleterious(0.04) possibly_damaging(0.854) TCGA-BR-A4IY-01 20 25434228 25434228 C G NINL Missense_Mutation p.E1336D 0.11 deleterious(0) probably_damaging(0.991) TCGA-BR-A4IY-01 20 41306531 41306531 G A PTPRT Silent p.P376P 0.10 TCGA-BR-A4IY-01 20 43580479 43580479 T C TOMM34 Missense_Mutation p.N182S 0.14 tolerated(0.92) benign(0.001) TCGA-BR-A4IY-01 20 5579448 5579448 A T GPCPD1 Nonsense_Mutation p.C23* 0.14 TCGA-BR-A4IY-01 20 61598562 61598562 A G SLC17A9 Intron 0.08 TCGA-BR-A4IY-01 20 61834049 61834049 C A YTHDF1 Nonsense_Mutation p.E415* 0.15 TCGA-BR-A4IY-01 20 62044926 62044926 C T KCNQ2 Missense_Mutation p.R547Q 0.11 tolerated(0.42) possibly_damaging(0.686) TCGA-BR-A4IY-01 20 62172223 62172223 G C SRMS Missense_Mutation p.S472C 0.14 deleterious(0) benign(0.037) TCGA-BR-A4IY-01 22 18609664 18609664 C T TUBA8 Missense_Mutation p.P307S 0.19 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BR-A4IY-01 22 23090299 23090299 T G IGLV3-16 Missense_Mutation p.F80V 0.06 deleterious(0) possibly_damaging(0.881) TCGA-BR-A4IY-01 22 31009006 31009006 T G TCN2 Missense_Mutation p.L135R 0.09 deleterious(0) probably_damaging(1) TCGA-BR-A4IY-01 22 32631073 32631073 G A SLC5A4 Silent p.N224N 0.11 TCGA-BR-A4IY-01 22 36902217 36902217 A G FOXRED2 Missense_Mutation p.Y85H 0.27 tolerated(0.62) benign(0.02) TCGA-BR-A4IY-01 22 38040901 38040901 C G SH3BP1 Missense_Mutation p.H238D 0.13 deleterious(0) probably_damaging(0.983) TCGA-BR-A4IY-01 22 41253153 41253153 T C XPNPEP3 5'UTR 0.26 TCGA-BR-A4IY-01 2 177016412 177016412 C A HOXD4 Missense_Mutation p.F17L 0.13 deleterious(0) possibly_damaging(0.615) TCGA-BR-A4IY-01 2 179444392 179444392 T C TTN Missense_Mutation p.K22511R 0.19 TCGA-BR-A4IY-01 2 196749505 196749505 G A DNAH7 Missense_Mutation p.S1856F 0.19 deleterious(0) probably_damaging(0.984) TCGA-BR-A4IY-01 2 204334977 204334977 A G RAPH1 Intron 0.14 TCGA-BR-A4IY-01 2 222428528 222428528 G A EPHA4 Missense_Mutation p.A249V 0.21 tolerated(0.07) probably_damaging(0.935) TCGA-BR-A4IY-01 2 26676341 26676341 C A DRC1 Missense_Mutation p.P615T 0.21 tolerated(0.25) benign(0.008) TCGA-BR-A4IY-01 2 27595527 27595528 - C SNX17 Frame_Shift_Ins p.K63Efs*9 0.20 TCGA-BR-A4IY-01 2 37364140 37364140 T C EIF2AK2 Silent p.Q236Q 0.23 TCGA-BR-A4IY-01 2 50780157 50780157 A T NRXN1 Missense_Mutation p.Y483N 0.31 deleterious(0) probably_damaging(1) TCGA-BR-A4IY-01 2 50780158 50780158 T A NRXN1 Silent p.V482V 0.31 TCGA-BR-A4IY-01 2 74596550 74596550 C A DCTN1 Missense_Mutation p.E487D 0.21 deleterious(0.01) probably_damaging(0.997) TCGA-BR-A4IY-01 2 90249166 90249166 T C IGKV1D-43 Missense_Mutation p.V41A 0.21 deleterious(0.05) possibly_damaging(0.529) TCGA-BR-A4IY-01 3 130656284 130656284 G A ATP2C1 Missense_Mutation p.V147I 0.15 deleterious(0) probably_damaging(0.987) TCGA-BR-A4IY-01 3 138762979 138762979 C T PRR23C Missense_Mutation p.E162K 0.12 tolerated(0.16) possibly_damaging(0.782) TCGA-BR-A4IY-01 3 142297490 142297490 G A ATR Silent p.G19G 0.20 TCGA-BR-A4IY-01 3 179298958 179298958 A C ACTL6A Missense_Mutation p.S326R 0.16 tolerated(0.07) possibly_damaging(0.653) TCGA-BR-A4IY-01 3 186501364 186501364 G T EIF4A2 5'UTR 0.20 TCGA-BR-A4IY-01 3 190105886 190105886 T A CLDN16 5'UTR 0.32 TCGA-BR-A4IY-01 3 46009092 46009092 G C FYCO1 Missense_Mutation p.N578K 0.22 tolerated(0.12) benign(0.035) TCGA-BR-A4IY-01 3 51308381 51308381 G A DOCK3 Missense_Mutation p.V831M 0.12 tolerated(0.06) probably_damaging(0.98) TCGA-BR-A4IY-01 3 9882475 9882475 A T RPUSD3 Missense_Mutation p.L141H 0.32 deleterious(0) probably_damaging(0.998) TCGA-BR-A4IY-01 4 100134789 100134789 C G ADH6 Missense_Mutation p.G79A 0.22 deleterious(0) probably_damaging(1) TCGA-BR-A4IY-01 4 123147962 123147962 G T KIAA1109 Missense_Mutation p.G965V 0.17 probably_damaging(1) TCGA-BR-A4IY-01 4 123147963 123147963 A T KIAA1109 Silent p.G965G 0.17 TCGA-BR-A4IY-01 4 147561058 147561058 C G POU4F2 Missense_Mutation p.R110G 0.10 tolerated_low_confidence(0.09) probably_damaging(0.931) TCGA-BR-A4IY-01 4 153691798 153691798 T C TIGD4 Missense_Mutation p.K120R 0.11 tolerated(0.27) probably_damaging(0.982) TCGA-BR-A4IY-01 4 186299314 186299314 G C LRP2BP Silent p.P9P 0.13 TCGA-BR-A4IY-01 4 2641518 2641518 G C FAM193A Silent p.L74L 0.25 TCGA-BR-A4IY-01 4 39978195 39978195 C A PDS5A Translation_Start_Site p.M1? 0.33 deleterious_low_confidence(0) benign(0.022) TCGA-BR-A4IY-01 4 56301576 56301576 C T CLOCK 3'UTR 0.13 TCGA-BR-A4IY-01 4 70066333 70066333 C A UGT2B11 Missense_Mutation p.G472V 0.14 deleterious(0) probably_damaging(1) TCGA-BR-A4IY-01 4 74351731 74351731 C A AFM Silent p.T141T 0.09 TCGA-BR-A4IY-01 5 1239618 1239618 C T SLC6A18 Silent p.F262F 0.19 TCGA-BR-A4IY-01 5 13944508 13944508 C T DNAH5 Missense_Mutation p.V14I 0.13 benign(0.103) TCGA-BR-A4IY-01 5 140580936 140580936 G A PCDHB11 Missense_Mutation p.R530H 0.21 tolerated_low_confidence(0.25) benign(0.015) TCGA-BR-A4IY-01 5 160033937 160033937 C T ATP10B Missense_Mutation p.D999N 0.25 deleterious(0.03) possibly_damaging(0.573) TCGA-BR-A4IY-01 5 5186198 5186217 TCTTGCCAGATGAGTATAAG - ADAMTS16 Frame_Shift_Del p.P268Lfs*4 0.10 TCGA-BR-A4IY-01 5 52204856 52204856 G A ITGA1 Silent p.V528V 0.17 TCGA-BR-A4IY-01 5 53752117 53752117 T C HSPB3 3'UTR 0.09 TCGA-BR-A4IY-01 5 75505622 75505622 C T SV2C Missense_Mutation p.R275W 0.15 deleterious(0) probably_damaging(0.997) TCGA-BR-A4IY-01 5 82816417 82816417 A G VCAN Silent p.R764R 0.14 TCGA-BR-A4IY-01 6 109480614 109480617 ATTT - CEP57L1 Frame_Shift_Del p.S324Nfs*3 0.19 TCGA-BR-A4IY-01 6 15524837 15524837 A C DTNBP1 Missense_Mutation p.M244R 0.14 deleterious(0) possibly_damaging(0.782) TCGA-BR-A4IY-01 6 155761124 155761124 C T NOX3 Missense_Mutation p.V212I 0.12 tolerated(1) benign(0.004) TCGA-BR-A4IY-01 6 165715558 165715558 G A C6orf118 Missense_Mutation p.R85W 0.24 deleterious(0.04) benign(0.07) TCGA-BR-A4IY-01 6 26124041 26124041 T G HIST1H2BC Missense_Mutation p.K31T 0.17 deleterious_low_confidence(0.03) unknown(0) TCGA-BR-A4IY-01 6 28478608 28478608 A G GPX6 Missense_Mutation p.I54T 0.18 deleterious(0.02) probably_damaging(0.955) TCGA-BR-A4IY-01 6 34498360 34498360 G A PACSIN1 Missense_Mutation p.G345S 0.19 tolerated(0.39) benign(0.034) TCGA-BR-A4IY-01 6 44274230 44274230 C G AARS2 Splice_Site p.X396_splice 0.15 TCGA-BR-A4IY-01 6 56469649 56469651 TTC - DST Intron 0.16 TCGA-BR-A4IY-01 6 74407197 74407197 A G CD109 Missense_Mutation p.E50G 0.18 tolerated(0.31) benign(0.003) TCGA-BR-A4IY-01 7 100675458 100675458 G A MUC17 Missense_Mutation p.S254N 0.16 benign(0.255) TCGA-BR-A4IY-01 7 117400721 117400721 T C CTTNBP2 Silent p.E980E 0.17 TCGA-BR-A4IY-01 7 128317770 128317770 T C FAM71F2 Missense_Mutation p.I173T 0.15 deleterious(0) probably_damaging(0.999) TCGA-BR-A4IY-01 7 132193205 132193205 G A PLXNA4 Missense_Mutation p.T83M 0.12 deleterious(0) possibly_damaging(0.76) TCGA-BR-A4IY-01 7 157926444 157926444 G A PTPRN2 Missense_Mutation p.A494V 0.19 tolerated(0.32) benign(0.001) TCGA-BR-A4IY-01 7 157926445 157926445 C A PTPRN2 Missense_Mutation p.A494S 0.18 tolerated(0.71) benign(0.021) TCGA-BR-A4IY-01 7 21630895 21630895 G A DNAH11 Silent p.L789L 0.31 TCGA-BR-A4IY-01 7 44058674 44058674 G A POLR2J4 RNA 0.19 TCGA-BR-A4IY-01 7 4831027 4831027 G T AP5Z1 3'UTR 0.20 TCGA-BR-A4IY-01 7 7283186 7283186 C T C1GALT1 Missense_Mutation p.S307F 0.33 deleterious(0) probably_damaging(0.996) TCGA-BR-A4IY-01 8 121344951 121344951 C A COL14A1 Missense_Mutation p.P1588T 0.16 tolerated(0.15) probably_damaging(1) TCGA-BR-A4IY-01 8 145741513 145741518 AGCCCT - RECQL4 In_Frame_Del p.R329_A330del 0.25 TCGA-BR-A4IY-01 8 2967802 2967802 A C CSMD1 Missense_Mutation p.F2162L 0.19 possibly_damaging(0.452) TCGA-BR-A4IY-01 8 70980506 70980506 T C PRDM14 Missense_Mutation p.S291G 0.26 deleterious(0) probably_damaging(0.992) TCGA-BR-A4IY-01 8 80677768 80677768 G A HEY1 Silent p.I194I 0.25 TCGA-BR-A4IY-01 8 81897495 81897495 C T PAG1 Missense_Mutation p.R131Q 0.16 deleterious(0) probably_damaging(0.998) TCGA-BR-A4IY-01 8 87076394 87076394 T - PSKH2 Frame_Shift_Del p.T218Qfs*2 0.10 TCGA-BR-A4IY-01 8 89053829 89053829 C A MMP16 Missense_Mutation p.V562L 0.14 tolerated(0.11) benign(0.15) TCGA-BR-A4IY-01 9 114464476 114464476 A G C9orf84 Missense_Mutation p.S936P 0.19 tolerated(0.1) probably_damaging(0.999) TCGA-BR-A4IY-01 9 114500580 114500580 G A C9orf84 Missense_Mutation p.T402M 0.11 tolerated(0.24) benign(0.077) TCGA-BR-A4IY-01 9 119976979 119976979 C T ASTN2 Missense_Mutation p.V225M 0.17 tolerated_low_confidence(0.85) unknown(0) TCGA-BR-A4IY-01 9 125023768 125023768 C T RBM18 Missense_Mutation p.E2K 0.09 tolerated_low_confidence(0.22) benign(0.432) TCGA-BR-A4IY-01 9 131381150 131381150 G C SPTAN1 Silent p.R1867R 0.05 TCGA-BR-A4IY-01 9 35563035 35563035 C A FAM166B Missense_Mutation p.S110I 0.17 deleterious(0) possibly_damaging(0.714) TCGA-BR-A4IY-01 9 79326133 79326133 T C PRUNE2 Missense_Mutation p.I353V 0.16 deleterious(0) possibly_damaging(0.765) TCGA-BR-A4IY-01 9 79865064 79865064 A C VPS13A Missense_Mutation p.N697H 0.25 tolerated(0.12) benign(0.396) TCGA-BR-A4IY-01 X 23411070 23411070 G A PTCHD1 Missense_Mutation p.E479K 0.05 tolerated(0.17) benign(0.146) TCGA-BR-A4IZ-01 10 105795287 105795287 C T COL17A1 Silent p.P1151P 0.09 TCGA-BR-A4IZ-01 10 79397033 79397033 C T KCNMA1 Missense_Mutation p.G123D 0.14 tolerated(0.63) benign(0.007) TCGA-BR-A4IZ-01 10 99218431 99218431 T C MMS19 3'UTR 0.21 TCGA-BR-A4IZ-01 11 66335480 66335480 C T CTSF Missense_Mutation p.R96Q 0.06 tolerated(1) benign(0.001) TCGA-BR-A4IZ-01 12 2566863 2566863 G A CACNA1C Missense_Mutation p.G250R 0.06 tolerated(0.09) possibly_damaging(0.904) TCGA-BR-A4IZ-01 15 90378806 90378806 G A C15orf38-AP3S2 Missense_Mutation p.R376W 0.05 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-BR-A4IZ-01 16 30094833 30094833 G A PPP4C Missense_Mutation p.R141H 0.09 deleterious(0.04) benign(0.117) TCGA-BR-A4IZ-01 16 31131664 31131664 C A KAT8 Missense_Mutation p.N97K 0.06 deleterious(0) possibly_damaging(0.838) TCGA-BR-A4IZ-01 16 51174998 51174998 C A SALL1 Missense_Mutation p.A379S 0.12 tolerated(0.28) benign(0.164) TCGA-BR-A4IZ-01 19 14079448 14079448 G A RFX1 Missense_Mutation p.A554V 0.10 tolerated(0.07) benign(0.048) TCGA-BR-A4IZ-01 19 36271837 36271837 G A ARHGAP33 Missense_Mutation p.R282H 0.05 tolerated_low_confidence(1) possibly_damaging(0.715) TCGA-BR-A4IZ-01 19 52272624 52272624 G A FPR2 Missense_Mutation p.R238H 0.08 tolerated(0.1) possibly_damaging(0.458) TCGA-BR-A4IZ-01 1 152286415 152286415 G A FLG Missense_Mutation p.S316L 0.05 probably_damaging(0.984) TCGA-BR-A4IZ-01 3 135722102 135722102 C T PPP2R3A Nonsense_Mutation p.R588* 0.07 TCGA-BR-A4IZ-01 4 153691406 153691406 A C TIGD4 Missense_Mutation p.C251G 0.06 tolerated(0.23) benign(0.015) TCGA-BR-A4IZ-01 4 57356812 57356812 G A SRP72 Splice_Site p.X501_splice 0.11 TCGA-BR-A4IZ-01 5 169474616 169474616 C T DOCK2 Missense_Mutation p.R1357W 0.09 deleterious(0) probably_damaging(0.997) TCGA-BR-A4IZ-01 5 33936904 33936904 A C RXFP3 Missense_Mutation p.K20T 0.06 deleterious_low_confidence(0.02) benign(0.006) TCGA-BR-A4IZ-01 8 8560088 8560088 G T CLDN23 Missense_Mutation p.E60D 0.14 tolerated(0.52) benign(0.022) TCGA-BR-A4IZ-01 X 140984463 140984463 C T MAGEC3 Intron 0.09 TCGA-BR-A4J1-01 10 117040941 117040941 C T ATRNL1 Missense_Mutation p.S726L 0.33 tolerated(0.29) benign(0.015) TCGA-BR-A4J1-01 10 30336633 30336633 T C KIAA1462 Missense_Mutation p.T37A 0.32 tolerated(0.79) benign(0.004) TCGA-BR-A4J1-01 10 98778863 98778863 A G SLIT1 Silent p.G916G 0.41 TCGA-BR-A4J1-01 10 99330311 99330311 G A UBTD1 3'UTR 0.27 TCGA-BR-A4J1-01 11 123676616 123676616 C G OR6M1 Missense_Mutation p.V148L 0.31 tolerated(0.58) benign(0.03) TCGA-BR-A4J1-01 11 46958381 46958381 C T C11orf49 Silent p.L9L 0.77 TCGA-BR-A4J1-01 11 5254298 5254304 CACACAC AAACACAA HBD Frame_Shift_Ins p.V112Lfs*29 0.54 TCGA-BR-A4J1-01 11 85429967 85429967 C G SYTL2 Intron 0.47 TCGA-BR-A4J1-01 12 10217429 10217429 T G CLEC9A Missense_Mutation p.D190E 0.21 deleterious(0) possibly_damaging(0.541) TCGA-BR-A4J1-01 12 111758322 111758322 G A CUX2 Missense_Mutation p.E837K 0.41 tolerated(0.09) benign(0.385) TCGA-BR-A4J1-01 12 120166313 120166313 C G CIT Silent p.L1195L 0.28 TCGA-BR-A4J1-01 12 20522996 20522996 C A PDE3A Missense_Mutation p.P260T 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-BR-A4J1-01 12 4747358 4747358 G A AKAP3 Missense_Mutation p.S2L 0.40 deleterious(0) benign(0.293) TCGA-BR-A4J1-01 12 53292550 53292550 C A KRT8 Missense_Mutation p.R400L 0.22 deleterious(0.02) benign(0.014) TCGA-BR-A4J1-01 12 88478386 88478386 G A CEP290 Missense_Mutation p.R1561C 0.26 possibly_damaging(0.471) TCGA-BR-A4J1-01 13 108518657 108518657 C G FAM155A Silent p.R96R 0.18 TCGA-BR-A4J1-01 13 61103082 61103082 C T TDRD3 Nonsense_Mutation p.Q575* 0.37 TCGA-BR-A4J1-01 13 86369349 86369349 A C SLITRK6 Missense_Mutation p.L432R 0.37 tolerated(0.09) probably_damaging(0.922) TCGA-BR-A4J1-01 13 92003635 92003635 G T MIR17HG RNA 0.22 TCGA-BR-A4J1-01 14 24771558 24771558 G A NOP9 Silent p.Q357Q 0.35 TCGA-BR-A4J1-01 14 45705143 45705143 C T MIS18BP1 Missense_Mutation p.V408I 0.62 tolerated(1) benign(0.001) TCGA-BR-A4J1-01 15 49118128 49118128 G C SHC4 3'UTR 0.37 TCGA-BR-A4J1-01 15 73528822 73528822 T C NEO1 Missense_Mutation p.F476L 0.37 deleterious(0) possibly_damaging(0.824) TCGA-BR-A4J1-01 16 89799938 89799938 C T ZNF276 Silent p.A443A 0.04 TCGA-BR-A4J1-01 17 41584527 41584527 A G DHX8 Missense_Mutation p.R629G 0.50 deleterious(0) probably_damaging(1) TCGA-BR-A4J1-01 17 60767595 60767595 G A MRC2 Missense_Mutation p.R1274Q 0.09 tolerated(0.11) possibly_damaging(0.697) TCGA-BR-A4J1-01 17 62025364 62025364 G T SCN4A Silent p.A1068A 0.44 TCGA-BR-A4J1-01 18 3581872 3581872 C G DLGAP1 Splice_Site p.X655_splice 0.06 TCGA-BR-A4J1-01 18 66513583 66513583 A G CCDC102B Silent p.R287R 0.22 TCGA-BR-A4J1-01 19 10800246 10800246 G - ILF3 3'UTR 0.22 TCGA-BR-A4J1-01 19 42584467 42584467 G A ZNF574 Missense_Mutation p.R570H 0.86 tolerated(0.13) possibly_damaging(0.84) TCGA-BR-A4J1-01 19 43430856 43430856 T A PSG7 Missense_Mutation p.K241M 0.40 tolerated(0.08) benign(0.103) TCGA-BR-A4J1-01 19 4930857 4930857 G C MIR4747 5'Flank 0.78 TCGA-BR-A4J1-01 19 53086109 53086109 G T ZNF701 Missense_Mutation p.G332V 0.23 deleterious(0) probably_damaging(0.975) TCGA-BR-A4J1-01 19 53793681 53793681 C A BIRC8 5'UTR 0.08 TCGA-BR-A4J1-01 19 54647253 54647253 G C CNOT3 Splice_Site p.X56_splice 0.19 TCGA-BR-A4J1-01 19 59060921 59060921 G A TRIM28 Missense_Mutation p.R629H 0.86 tolerated(0.06) probably_damaging(0.931) TCGA-BR-A4J1-01 1 1330804 1330804 A C CCNL2 Silent p.G188G 0.34 TCGA-BR-A4J1-01 1 15789355 15789355 G T CELA2A Missense_Mutation p.G119W 0.05 deleterious(0.02) probably_damaging(1) TCGA-BR-A4J1-01 1 159901336 159901336 G A IGSF9 Nonsense_Mutation p.R474* 0.74 TCGA-BR-A4J1-01 1 2318934 2318934 C A MORN1 Missense_Mutation p.E94D 0.26 deleterious(0) probably_damaging(0.999) TCGA-BR-A4J1-01 1 237167694 237167694 C T MT1HL1 5'UTR 0.83 TCGA-BR-A4J1-01 1 27100120 27100123 CAGC - ARID1A Frame_Shift_Del p.Q1306Rfs*174 0.72 TCGA-BR-A4J1-01 1 36642154 36642154 C T MAP7D1 Missense_Mutation p.P402L 0.31 benign(0.001) TCGA-BR-A4J1-01 1 36929865 36929865 G A MRPS15 Silent p.V4V 0.13 TCGA-BR-A4J1-01 1 4715398 4715398 C T AJAP1 5'UTR 0.29 TCGA-BR-A4J1-01 1 59004914 59004914 C G OMA1 Missense_Mutation p.R18P 0.25 deleterious_low_confidence(0.04) possibly_damaging(0.829) TCGA-BR-A4J1-01 20 1551635 1551635 G T SIRPB1 Silent p.T300T 0.21 TCGA-BR-A4J1-01 20 20453517 20453517 G A RALGAPA2 Silent p.N1817N 0.14 TCGA-BR-A4J1-01 20 42232397 42232397 T C IFT52 Intron 0.35 TCGA-BR-A4J1-01 20 52583568 52583568 T A BCAS1 Silent p.V409V 0.08 TCGA-BR-A4J1-01 20 55208570 55208570 C T TFAP2C Nonsense_Mutation p.R250* 0.17 TCGA-BR-A4J1-01 20 60770943 60770943 G A MTG2 Missense_Mutation p.R97H 0.16 tolerated(0.22) possibly_damaging(0.749) TCGA-BR-A4J1-01 21 41414474 41414474 C T DSCAM Missense_Mutation p.C1837Y 0.40 deleterious(0) probably_damaging(0.993) TCGA-BR-A4J1-01 22 18210043 18210043 G A BCL2L13 Missense_Mutation p.A401T 0.83 tolerated_low_confidence(0.26) benign(0.002) TCGA-BR-A4J1-01 2 149247083 149247083 G A MBD5 Silent p.P1061P 0.44 TCGA-BR-A4J1-01 2 206480274 206480274 A G PARD3B Missense_Mutation p.M1057V 0.21 tolerated(0.51) benign(0.001) TCGA-BR-A4J1-01 2 219694947 219694947 G A PRKAG3 Silent p.S129S 0.19 TCGA-BR-A4J1-01 2 71650235 71650235 G C ZNF638 Missense_Mutation p.E1197D 0.32 deleterious(0.03) benign(0.004) TCGA-BR-A4J1-01 2 95815684 95815684 A G ZNF514 Silent p.D182D 0.28 TCGA-BR-A4J1-01 3 101451439 101451439 C T CEP97 Silent p.I223I 0.21 TCGA-BR-A4J1-01 3 124462864 124462864 G A UMPS Missense_Mutation p.R459H 0.34 tolerated(0.11) benign(0.005) TCGA-BR-A4J1-01 3 129140421 129140421 G T EFCAB12 Missense_Mutation p.A92D 0.43 tolerated(0.33) benign(0.016) TCGA-BR-A4J1-01 3 151163813 151163813 G C IGSF10 Missense_Mutation p.P1319R 0.77 tolerated(0.65) benign(0) TCGA-BR-A4J1-01 3 192988433 192988433 C A HRASLS Missense_Mutation p.A254D 0.27 deleterious(0.01) probably_damaging(0.973) TCGA-BR-A4J1-01 3 49200840 49200840 G A CCDC71 Missense_Mutation p.R268W 0.42 deleterious(0.04) probably_damaging(0.963) TCGA-BR-A4J1-01 3 99568539 99568539 G A FILIP1L Nonsense_Mutation p.R661* 0.35 TCGA-BR-A4J1-01 4 86916641 86916641 G C ARHGAP24 Missense_Mutation p.D612H 0.42 deleterious(0.01) possibly_damaging(0.867) TCGA-BR-A4J1-01 5 111754701 111754701 G T EPB41L4A Nonsense_Mutation p.Y12* 0.37 TCGA-BR-A4J1-01 5 137521329 137521329 C T KIF20A Silent p.S685S 0.38 TCGA-BR-A4J1-01 5 140793840 140793840 G A PCDHGA10 Silent p.L366L 0.09 TCGA-BR-A4J1-01 5 171295748 171295748 C A FBXW11 Missense_Mutation p.S507I 0.44 deleterious(0) probably_damaging(1) TCGA-BR-A4J1-01 5 90004691 90004691 C T GPR98 Missense_Mutation p.T2930I 0.35 benign(0) TCGA-BR-A4J1-01 6 70042817 70042817 C T BAI3 Silent p.V1035V 0.11 TCGA-BR-A4J1-01 6 73904416 73904416 C T KCNQ5 Missense_Mutation p.T712M 0.25 deleterious(0) possibly_damaging(0.891) TCGA-BR-A4J1-01 7 11091378 11091378 G C PHF14 Missense_Mutation p.E818Q 0.36 deleterious(0.04) possibly_damaging(0.703) TCGA-BR-A4J1-01 7 40132775 40132775 A C CDK13 Silent p.G1209G 0.21 TCGA-BR-A4J1-01 7 4901375 4901375 C T PAPOLB Missense_Mutation p.V22I 0.23 tolerated(1) benign(0.001) TCGA-BR-A4J1-01 7 99709580 99709580 T C TAF6 Missense_Mutation p.M292V 0.56 deleterious(0.02) benign(0.041) TCGA-BR-A4J1-01 8 107691447 107691447 A C OXR1 Missense_Mutation p.Q78P 0.17 deleterious(0.03) probably_damaging(0.998) TCGA-BR-A4J1-01 8 142487931 142487931 T G MROH5 3'UTR 0.35 TCGA-BR-A4J1-01 8 145009469 145009469 G A PLEC Silent p.I342I 0.23 TCGA-BR-A4J1-01 8 22102506 22102506 T C POLR3D 5'Flank 0.76 TCGA-BR-A4J1-01 8 36644891 36644891 G C KCNU1 Missense_Mutation p.R88P 0.85 deleterious(0.01) possibly_damaging(0.898) TCGA-BR-A4J1-01 8 56015173 56015173 C T XKR4 Missense_Mutation p.S42L 0.18 tolerated_low_confidence(0.1) benign(0) TCGA-BR-A4J1-01 9 114124255 114124255 C G KIAA0368 3'UTR 0.39 TCGA-BR-A4J1-01 9 35813021 35813021 A T HINT2 3'UTR 0.21 TCGA-BR-A4J1-01 X 117032969 117032969 C A KLHL13 Nonsense_Mutation p.E627* 0.76 TCGA-BR-A4J1-01 X 117796673 117796673 C T DOCK11 Missense_Mutation p.A1665V 0.78 deleterious(0.01) benign(0.212) TCGA-BR-A4J1-01 X 6069107 6069107 G C NLGN4X Missense_Mutation p.T134S 0.78 tolerated(0.84) possibly_damaging(0.9) TCGA-BR-A4J2-01 10 74684272 74684272 C T OIT3 Missense_Mutation p.R413C 0.05 deleterious(0) probably_damaging(0.932) TCGA-BR-A4J2-01 11 108128225 108128225 A T ATM Silent p.A756A 0.08 TCGA-BR-A4J2-01 11 120924372 120924372 G A TBCEL Missense_Mutation p.R129H 0.09 deleterious(0) probably_damaging(0.999) TCGA-BR-A4J2-01 11 1221799 1221799 C T MUC5AC RNA 0.14 TCGA-BR-A4J2-01 11 421037 421037 G A ANO9 Silent p.H466H 0.09 TCGA-BR-A4J2-01 11 60783242 60783242 C T CD6 Missense_Mutation p.S482L 0.08 deleterious(0.03) benign(0.226) TCGA-BR-A4J2-01 11 64064717 64064717 G A KCNK4 Missense_Mutation p.R147H 0.10 tolerated(0.08) probably_damaging(0.953) TCGA-BR-A4J2-01 11 7064768 7064768 C T NLRP14 Missense_Mutation p.S504F 0.09 tolerated(0.45) benign(0.007) TCGA-BR-A4J2-01 12 110474086 110474086 G A ANKRD13A Silent p.S510S 0.06 TCGA-BR-A4J2-01 12 76740888 76740888 T C BBS10 Missense_Mutation p.K293E 0.08 deleterious(0) benign(0.158) TCGA-BR-A4J2-01 12 78569085 78569085 G T NAV3 Splice_Site p.X1661_splice 0.07 TCGA-BR-A4J2-01 13 48951169 48951169 A T RB1 Missense_Mutation p.Q444L 0.16 deleterious(0.03) possibly_damaging(0.82) TCGA-BR-A4J2-01 14 58795012 58795012 C T ARID4A Nonsense_Mutation p.R214* 0.08 TCGA-BR-A4J2-01 15 41165698 41165698 T C RHOV Missense_Mutation p.E90G 0.06 deleterious(0.04) probably_damaging(0.995) TCGA-BR-A4J2-01 15 42167137 42167137 G A SPTBN5 Missense_Mutation p.R1469W 0.08 possibly_damaging(0.599) TCGA-BR-A4J2-01 15 74963882 74963882 T C EDC3 Missense_Mutation p.Q133R 0.07 tolerated(0.46) benign(0.045) TCGA-BR-A4J2-01 15 90799471 90799471 G A TTLL13 Missense_Mutation p.R216Q 0.07 tolerated(0.07) benign(0.035) TCGA-BR-A4J2-01 16 46956237 46956237 G A GPT2 Missense_Mutation p.R374H 0.07 deleterious(0.01) probably_damaging(0.931) TCGA-BR-A4J2-01 16 58030845 58030845 G A ZNF319 Missense_Mutation p.A442V 0.12 tolerated(0.21) probably_damaging(0.998) TCGA-BR-A4J2-01 16 72130190 72130190 G A DHX38 Missense_Mutation p.R45H 0.12 deleterious(0) possibly_damaging(0.84) TCGA-BR-A4J2-01 16 9934865 9934865 G A GRIN2A Silent p.Y475Y 0.12 TCGA-BR-A4J2-01 17 28539849 28539849 C T SLC6A4 Silent p.T371T 0.08 TCGA-BR-A4J2-01 17 39165178 39165178 G A KRTAP3-1 Missense_Mutation p.T50I 0.07 tolerated_low_confidence(0.15) benign(0.175) TCGA-BR-A4J2-01 18 24722695 24722695 G A CHST9 Missense_Mutation p.L27F 0.05 deleterious(0.03) possibly_damaging(0.894) TCGA-BR-A4J2-01 18 50741940 50741940 C T DCC Silent p.N628N 0.07 TCGA-BR-A4J2-01 19 5667069 5667069 C T SAFB Missense_Mutation p.R783C 0.17 deleterious(0) unknown(0) TCGA-BR-A4J2-01 19 9638958 9638958 A G ZNF426 3'UTR 0.29 TCGA-BR-A4J2-01 1 13718542 13718542 C T PRAMEF17 Silent p.T335T 0.10 TCGA-BR-A4J2-01 1 158151309 158151309 G A CD1D Silent p.T42T 0.16 TCGA-BR-A4J2-01 1 158613204 158613204 G T SPTA1 Silent p.I1450I 0.11 TCGA-BR-A4J2-01 1 158746540 158746540 C A OR6N2 Nonsense_Mutation p.E296* 0.08 TCGA-BR-A4J2-01 1 66379016 66379016 G T PDE4B Missense_Mutation p.V7L 0.07 tolerated_low_confidence(0.08) benign(0.026) TCGA-BR-A4J2-01 20 33508811 33508811 T G ACSS2 Missense_Mutation p.F395L 0.12 deleterious(0) possibly_damaging(0.883) TCGA-BR-A4J2-01 20 44664476 44664476 G A SLC12A5 Missense_Mutation p.V137I 0.11 tolerated(0.07) possibly_damaging(0.797) TCGA-BR-A4J2-01 2 10101324 10101324 C T GRHL1 Missense_Mutation p.T143M 0.07 tolerated(0.06) probably_damaging(0.939) TCGA-BR-A4J2-01 2 1544475 1544475 G A TPO Missense_Mutation p.A910T 0.08 tolerated_low_confidence(0.44) benign(0.002) TCGA-BR-A4J2-01 2 166535704 166535704 A G CSRNP3 Missense_Mutation p.H400R 0.13 tolerated(0.09) probably_damaging(0.99) TCGA-BR-A4J2-01 2 179586749 179586749 A C TTN Silent p.T7547T 0.06 TCGA-BR-A4J2-01 2 196825572 196825572 C T DNAH7 Missense_Mutation p.R768H 0.16 deleterious(0.04) benign(0.022) TCGA-BR-A4J2-01 3 138116252 138116252 G A MRAS Missense_Mutation p.V94I 0.10 tolerated(0.93) probably_damaging(0.997) TCGA-BR-A4J2-01 3 164906811 164906811 C T SLITRK3 Missense_Mutation p.R603H 0.06 deleterious(0) probably_damaging(0.973) TCGA-BR-A4J2-01 3 183368817 183368817 A C KLHL24 Missense_Mutation p.K225Q 0.09 tolerated(0.17) possibly_damaging(0.67) TCGA-BR-A4J2-01 3 189582154 189582154 C T TP63 Missense_Mutation p.T238M 0.06 deleterious(0) probably_damaging(0.999) TCGA-BR-A4J2-01 4 164466833 164466833 G A MARCH1 Silent p.H162H 0.12 TCGA-BR-A4J2-01 4 85715865 85715865 G A WDFY3 Silent p.S1098S 0.07 TCGA-BR-A4J2-01 5 131326567 131326567 G A ACSL6 Missense_Mutation p.R122C 0.06 deleterious(0.01) benign(0.001) TCGA-BR-A4J2-01 5 140250589 140250589 G A PCDHA11 Missense_Mutation p.R634H 0.07 deleterious_low_confidence(0.01) possibly_damaging(0.763) TCGA-BR-A4J2-01 5 140530549 140530549 C T PCDHB6 Silent p.N237N 0.09 TCGA-BR-A4J2-01 5 140581312 140581312 C T PCDHB11 Silent p.T655T 0.06 TCGA-BR-A4J2-01 5 156592829 156592829 T C FAM71B Silent p.L117L 0.09 TCGA-BR-A4J2-01 5 95768636 95768636 C T PCSK1 Silent p.A37A 0.08 TCGA-BR-A4J2-01 6 170592163 170592163 G A DLL1 Silent p.D693D 0.16 TCGA-BR-A4J2-01 6 78172596 78172596 G A HTR1B Silent p.V175V 0.07 TCGA-BR-A4J2-01 7 150093795 150093795 C A ZNF775 Missense_Mutation p.P76T 0.14 deleterious(0.01) possibly_damaging(0.814) TCGA-BR-A4J2-01 7 150093796 150093796 C T ZNF775 Missense_Mutation p.P76L 0.14 tolerated(0.05) probably_damaging(0.922) TCGA-BR-A4J2-01 7 27239615 27239615 C A HOXA13 Missense_Mutation p.A28S 0.13 tolerated(0.88) unknown(0) TCGA-BR-A4J2-01 7 72984991 72984991 C T TBL2 Missense_Mutation p.R397Q 0.12 deleterious(0.04) possibly_damaging(0.475) TCGA-BR-A4J2-01 7 93519622 93519622 G A TFPI2 Missense_Mutation p.A33V 0.11 tolerated(0.11) benign(0.039) TCGA-BR-A4J2-01 8 106814511 106814511 G A ZFPM2 Missense_Mutation p.R734H 0.07 deleterious(0) probably_damaging(0.998) TCGA-BR-A4J2-01 8 40554842 40554842 C T ZMAT4 Missense_Mutation p.D91N 0.06 tolerated(0.48) benign(0.183) TCGA-BR-A4J2-01 8 59728015 59728015 G A TOX Missense_Mutation p.P425L 0.13 tolerated(0.05) probably_damaging(0.992) TCGA-BR-A4J2-01 8 72754892 72754892 C T MSC 3'UTR 0.08 TCGA-BR-A4J2-01 8 75757681 75757681 G A PI15 Nonsense_Mutation p.W197* 0.09 TCGA-BR-A4J2-01 9 130940663 130940663 C T CIZ1 Silent p.A535A 0.10 TCGA-BR-A4J2-01 9 135374767 135374767 C T C9orf171 Missense_Mutation p.R138C 0.08 deleterious(0) possibly_damaging(0.707) TCGA-BR-A4J2-01 9 140350865 140350865 T C NSMF Silent p.Q234Q 0.07 TCGA-BR-A4J2-01 X 153036951 153036951 C T PLXNB3 Silent p.Y809Y 0.22 TCGA-BR-A4J2-01 X 20081624 20081624 G A MAP7D2 Nonsense_Mutation p.R94* 0.11 TCGA-BR-A4J2-01 X 2408790 2408790 C T ZBED1 5'UTR 0.08 TCGA-BR-A4J2-01 X 6451807 6451807 C T VCX3A Missense_Mutation p.M180I 0.04 tolerated(0.58) unknown(0) TCGA-BR-A4J4-01 10 118451920 118451920 G A HSPA12A Missense_Mutation p.T202M 0.21 deleterious(0) probably_damaging(0.972) TCGA-BR-A4J4-01 10 13336443 13336443 G T PHYH Nonsense_Mutation p.Y133* 0.19 TCGA-BR-A4J4-01 10 16990548 16990548 G A CUBN Missense_Mutation p.T1713M 0.19 tolerated(0.15) benign(0.393) TCGA-BR-A4J4-01 10 45486417 45486417 G T RASSF4 Missense_Mutation p.C236F 0.22 deleterious(0.04) benign(0.01) TCGA-BR-A4J4-01 10 67726396 67726396 G T CTNNA3 Missense_Mutation p.L792M 0.23 deleterious(0.01) unknown(0) TCGA-BR-A4J4-01 10 70775550 70775550 A G KIAA1279 Missense_Mutation p.Y415C 0.26 deleterious(0.01) probably_damaging(0.943) TCGA-BR-A4J4-01 11 111750129 111750129 C T C11orf1 5'UTR 0.12 TCGA-BR-A4J4-01 11 114112981 114112981 C T ZBTB16 Missense_Mutation p.R516C 0.17 deleterious(0.01) benign(0.019) TCGA-BR-A4J4-01 11 117395775 117395775 T C DSCAML1 Missense_Mutation p.I288V 0.31 tolerated(0.21) benign(0.011) TCGA-BR-A4J4-01 11 119217033 119217033 G A MFRP Missense_Mutation p.P36S 0.28 tolerated(0.55) benign(0.004) TCGA-BR-A4J4-01 11 45945817 45945817 G A GYLTL1B Missense_Mutation p.D161N 0.04 tolerated(0.18) benign(0.032) TCGA-BR-A4J4-01 11 49974639 49974639 C T OR4C13 Missense_Mutation p.S222F 0.20 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-BR-A4J4-01 12 117723124 117723124 C T NOS1 Missense_Mutation p.R435H 0.15 deleterious(0) probably_damaging(0.958) TCGA-BR-A4J4-01 12 53566164 53566164 C T CSAD Missense_Mutation p.G131R 0.36 deleterious(0) probably_damaging(0.988) TCGA-BR-A4J4-01 12 6128308 6128308 G A VWF Missense_Mutation p.R1426C 0.20 deleterious(0) benign(0.067) TCGA-BR-A4J4-01 12 64485106 64485106 G A SRGAP1 Missense_Mutation p.R496H 0.12 tolerated(0.24) probably_damaging(0.998) TCGA-BR-A4J4-01 12 6692411 6692411 C A CHD4 Missense_Mutation p.R1338I 0.19 deleterious(0) probably_damaging(0.928) TCGA-BR-A4J4-01 12 7083744 7083744 A G EMG1 Missense_Mutation p.N100D 0.27 deleterious(0) TCGA-BR-A4J4-01 12 71833964 71833964 C T LGR5 Missense_Mutation p.P35L 0.34 tolerated(0.05) benign(0.046) TCGA-BR-A4J4-01 13 74269809 74269809 C A KLF12 Splice_Site p.X343_splice 0.21 TCGA-BR-A4J4-01 14 64596520 64596520 G C SYNE2 Silent p.V4680V 0.23 TCGA-BR-A4J4-01 14 91749697 91749697 C T CCDC88C Missense_Mutation p.A1536T 0.22 tolerated(0.47) benign(0.001) TCGA-BR-A4J4-01 14 93176158 93176158 G A LGMN Silent p.P293P 0.20 TCGA-BR-A4J4-01 15 81592486 81592486 C T IL16 Missense_Mutation p.P940L 0.37 tolerated(0.09) benign(0.008) TCGA-BR-A4J4-01 16 3334025 3334025 G T ZNF263 Missense_Mutation p.W69C 0.22 deleterious(0) probably_damaging(0.999) TCGA-BR-A4J4-01 16 56544774 56544775 TT - BBS2 Frame_Shift_Del p.K177Rfs*7 0.20 TCGA-BR-A4J4-01 16 57931809 57931809 C T CNGB1 Missense_Mutation p.G996S 0.20 deleterious(0) probably_damaging(0.998) TCGA-BR-A4J4-01 17 12656514 12656514 C A MYOCD Missense_Mutation p.H637N 0.20 tolerated(0.06) probably_damaging(0.998) TCGA-BR-A4J4-01 17 1586851 1586851 C T PRPF8 Missense_Mutation p.R82H 0.23 deleterious(0.01) possibly_damaging(0.903) TCGA-BR-A4J4-01 17 28537598 28537598 G A SLC6A4 Missense_Mutation p.R462W 0.17 deleterious(0) probably_damaging(1) TCGA-BR-A4J4-01 17 39254221 39254221 C A KRTAP4-8 Missense_Mutation p.C39F 0.33 deleterious(0) unknown(0) TCGA-BR-A4J4-01 17 59557598 59557598 C T TBX4 Silent p.L313L 0.40 TCGA-BR-A4J4-01 18 3067235 3067235 C T MYOM1 3'UTR 0.27 TCGA-BR-A4J4-01 18 61089532 61089532 A C VPS4B 5'UTR 0.18 TCGA-BR-A4J4-01 18 72187233 72187233 G T CNDP2 Splice_Site p.X453_splice 0.08 TCGA-BR-A4J4-01 19 14262032 14262032 C G LPHN1 Missense_Mutation p.E1360Q 0.15 tolerated(0.39) possibly_damaging(0.677) TCGA-BR-A4J4-01 19 17337947 17337947 C T OCEL1 Missense_Mutation p.P131S 0.18 tolerated(0.28) benign(0.06) TCGA-BR-A4J4-01 19 3959148 3959148 C T DAPK3 Missense_Mutation p.R439H 0.27 tolerated_low_confidence(0.27) benign(0.139) TCGA-BR-A4J4-01 19 53572897 53572897 C T ZNF160 Missense_Mutation p.R297H 0.15 tolerated(0.14) benign(0) TCGA-BR-A4J4-01 19 7682912 7682912 C T CAMSAP3 Missense_Mutation p.T1267I 0.21 deleterious(0) unknown(0) TCGA-BR-A4J4-01 1 110294652 110294652 G A EPS8L3 Missense_Mutation p.R468W 0.23 deleterious(0) possibly_damaging(0.799) TCGA-BR-A4J4-01 1 112318860 112318860 G C KCND3 Missense_Mutation p.P603A 0.19 deleterious_low_confidence(0.02) possibly_damaging(0.539) TCGA-BR-A4J4-01 1 112318869 112318869 C T KCND3 Missense_Mutation p.G600R 0.19 tolerated_low_confidence(0.12) probably_damaging(0.956) TCGA-BR-A4J4-01 1 145368633 145368633 G A NBPF10 Silent p.T3537T 0.08 TCGA-BR-A4J4-01 1 161681755 161681755 A G FCRLA Silent p.V200V 0.23 TCGA-BR-A4J4-01 1 223568231 223568231 C T C1orf65 Missense_Mutation p.R472C 0.29 deleterious(0) probably_damaging(0.994) TCGA-BR-A4J4-01 1 231339757 231339757 G A TRIM67 Missense_Mutation p.R560Q 0.21 deleterious(0.02) probably_damaging(0.994) TCGA-BR-A4J4-01 1 248366497 248366497 C A OR2M3 Missense_Mutation p.S43Y 0.23 tolerated(0.1) benign(0.211) TCGA-BR-A4J4-01 1 249108783 249108783 C T SH3BP5L Silent p.A134A 0.31 TCGA-BR-A4J4-01 1 86965518 86965518 G A CLCA1 Silent p.Q845Q 0.20 TCGA-BR-A4J4-01 20 40033670 40033670 C T CHD6 Missense_Mutation p.D2571N 0.43 tolerated(0.06) possibly_damaging(0.881) TCGA-BR-A4J4-01 20 5294853 5294853 C T PROKR2 Missense_Mutation p.V55I 0.15 tolerated(0.59) benign(0.001) TCGA-BR-A4J4-01 20 60581663 60581663 G A TAF4 Missense_Mutation p.T709M 0.21 possibly_damaging(0.533) TCGA-BR-A4J4-01 20 60749663 60749663 C T SS18L1 Missense_Mutation p.P376L 0.16 deleterious_low_confidence(0) unknown(0) TCGA-BR-A4J4-01 22 33253288 33253288 C A TIMP3 Missense_Mutation p.A86D 0.25 tolerated(0.14) probably_damaging(0.999) TCGA-BR-A4J4-01 2 130725857 130725857 G C RAB6C-AS1 RNA 0.21 TCGA-BR-A4J4-01 2 152420119 152420119 C G NEB Splice_Site p.X6231_splice 0.25 TCGA-BR-A4J4-01 2 179197373 179197373 G T OSBPL6 Missense_Mutation p.Q126H 0.18 deleterious(0.02) probably_damaging(0.997) TCGA-BR-A4J4-01 2 182350607 182350607 G A ITGA4 Splice_Site p.X348_splice 0.25 TCGA-BR-A4J4-01 2 224462648 224462648 C T SCG2 Silent p.S451S 0.14 TCGA-BR-A4J4-01 2 227919448 227919448 G A COL4A4 Missense_Mutation p.R908W 0.28 unknown(0) TCGA-BR-A4J4-01 2 27360429 27360429 G T C2orf53 Silent p.R257R 0.25 TCGA-BR-A4J4-01 2 36982155 36982155 T C VIT Missense_Mutation p.S123P 0.27 deleterious(0) probably_damaging(0.986) TCGA-BR-A4J4-01 2 48848398 48848398 C G STON1-GTF2A1L Missense_Mutation p.H776Q 0.17 tolerated(0.35) benign(0.026) TCGA-BR-A4J4-01 2 55470638 55470638 C T MTIF2 Missense_Mutation p.R493Q 0.14 tolerated(0.47) benign(0.001) TCGA-BR-A4J4-01 3 107881416 107881416 T C IFT57 Missense_Mutation p.T400A 0.15 tolerated(0.1) benign(0.395) TCGA-BR-A4J4-01 3 119102043 119102043 A C ARHGAP31 Missense_Mutation p.N218H 0.13 tolerated(0.13) benign(0.002) TCGA-BR-A4J4-01 3 145917695 145917695 G A PLSCR4 Missense_Mutation p.R177W 0.43 deleterious(0) probably_damaging(0.998) TCGA-BR-A4J4-01 3 183885732 183885732 G A DVL3 Silent p.T459T 0.13 TCGA-BR-A4J4-01 3 52822070 52822070 C T ITIH1 Nonsense_Mutation p.R665* 0.20 TCGA-BR-A4J4-01 4 101342516 101342516 A C EMCN Missense_Mutation p.V196G 0.25 deleterious(0) probably_damaging(0.981) TCGA-BR-A4J4-01 4 162307215 162307215 G T FSTL5 Missense_Mutation p.A743E 0.14 deleterious(0.02) probably_damaging(0.986) TCGA-BR-A4J4-01 4 40428122 40428122 G A RBM47 Silent p.N527N 0.24 TCGA-BR-A4J4-01 4 89391825 89391825 G A HERC5 Splice_Site p.X433_splice 0.19 TCGA-BR-A4J4-01 5 126859170 126859170 A G PRRC1 5'UTR 0.24 TCGA-BR-A4J4-01 5 140221912 140221912 G A PCDHA8 Missense_Mutation p.V336I 0.17 tolerated_low_confidence(0.23) benign(0.066) TCGA-BR-A4J4-01 5 153085480 153085480 G A GRIA1 Missense_Mutation p.R569H 0.19 deleterious(0) probably_damaging(1) TCGA-BR-A4J4-01 5 33588884 33588884 C T ADAMTS12 Silent p.S895S 0.17 TCGA-BR-A4J4-01 5 35876556 35876556 G A IL7R Missense_Mutation p.V450I 0.25 deleterious(0.03) possibly_damaging(0.465) TCGA-BR-A4J4-01 5 79033258 79033258 C A CMYA5 Missense_Mutation p.S2890R 0.21 probably_damaging(0.948) TCGA-BR-A4J4-01 5 83402534 83402534 C T EDIL3 Missense_Mutation p.R195H 0.19 deleterious(0.01) probably_damaging(1) TCGA-BR-A4J4-01 6 10874928 10874928 C A GCM2 Missense_Mutation p.S274I 0.19 deleterious(0) possibly_damaging(0.59) TCGA-BR-A4J4-01 6 146240548 146240548 C G SHPRH Missense_Mutation p.R1363T 0.38 deleterious(0) possibly_damaging(0.841) TCGA-BR-A4J4-01 6 147685193 147685193 G A STXBP5 Missense_Mutation p.R991Q 0.21 tolerated(0.24) probably_damaging(0.979) TCGA-BR-A4J4-01 6 152540275 152540275 G A SYNE1 Missense_Mutation p.L7303F 0.05 probably_damaging(0.997) TCGA-BR-A4J4-01 6 157528141 157528141 T C ARID1B Missense_Mutation p.S1956P 0.38 probably_damaging(0.991) TCGA-BR-A4J4-01 6 30037176 30037176 T C PPP1R11 3'UTR 0.23 TCGA-BR-A4J4-01 6 37623600 37623600 G A MDGA1 Missense_Mutation p.T152M 0.10 deleterious(0) probably_damaging(0.999) TCGA-BR-A4J4-01 7 114299725 114299725 G A FOXP2 Nonsense_Mutation p.W573* 0.12 TCGA-BR-A4J4-01 7 155499703 155499703 G A RBM33 Missense_Mutation p.E297K 0.31 tolerated(0.07) possibly_damaging(0.808) TCGA-BR-A4J4-01 7 47342944 47342944 C T TNS3 Missense_Mutation p.G1021S 0.24 tolerated(0.54) benign(0.003) TCGA-BR-A4J4-01 7 50468286 50468286 G A IKZF1 Silent p.S465S 0.12 TCGA-BR-A4J4-01 7 5951553 5951553 G C CCZ1 Missense_Mutation p.R281T 0.28 deleterious(0.02) possibly_damaging(0.519) TCGA-BR-A4J4-01 8 106800947 106800947 G A ZFPM2 Silent p.G178G 0.22 TCGA-BR-A4J4-01 8 143745736 143745736 A T JRK RNA 0.21 TCGA-BR-A4J4-01 8 90937640 90937640 T G OSGIN2 Silent p.V510V 0.41 TCGA-BR-A4J4-01 9 104317113 104317113 C A RNF20 Silent p.A719A 0.08 TCGA-BR-A4J4-01 9 126133738 126133738 G A CRB2 Missense_Mutation p.D773N 0.16 tolerated(1) possibly_damaging(0.555) TCGA-BR-A4J4-01 9 137716542 137716542 G A COL5A1 Missense_Mutation p.E1599K 0.12 unknown(0) TCGA-BR-A4J4-01 9 91083396 91083396 C T SPIN1 Silent p.V155V 0.23 TCGA-BR-A4J4-01 X 10058819 10058819 G A WWC3 Missense_Mutation p.R129Q 0.35 tolerated(0.31) probably_damaging(0.955) TCGA-BR-A4J4-01 X 105450563 105450563 C T MUM1L1 Missense_Mutation p.R380C 0.45 deleterious(0.02) probably_damaging(0.942) TCGA-BR-A4J5-01 10 11317064 11317064 C T CELF2 Silent p.S274S 0.07 TCGA-BR-A4J5-01 10 127738232 127738232 T G ADAM12 Missense_Mutation p.K542T 0.05 deleterious(0.02) probably_damaging(0.948) TCGA-BR-A4J5-01 10 16918916 16918916 T G CUBN Missense_Mutation p.K3029T 0.19 tolerated(0.18) benign(0.432) TCGA-BR-A4J5-01 10 30306781 30306781 G A KIAA1462 3'UTR 0.16 TCGA-BR-A4J5-01 10 50944097 50944097 T C OGDHL Missense_Mutation p.T961A 0.13 deleterious(0.02) benign(0.022) TCGA-BR-A4J5-01 10 73537444 73537444 C T C10orf54 5'Flank 0.11 TCGA-BR-A4J5-01 10 93260992 93260992 A T HECTD2 Missense_Mutation p.K704M 0.07 deleterious(0) probably_damaging(0.934) TCGA-BR-A4J5-01 11 1093864 1093876 ACGGCACCCACGA - MUC2 Frame_Shift_Del p.T1895Pfs*65 0.08 TCGA-BR-A4J5-01 11 132813017 132813017 G A OPCML 5'UTR 0.13 TCGA-BR-A4J5-01 11 46702918 46702918 T A ARHGAP1 Missense_Mutation p.N154I 0.21 deleterious(0) probably_damaging(0.998) TCGA-BR-A4J5-01 11 55065017 55065017 C A TRIM51HP RNA 0.10 TCGA-BR-A4J5-01 11 60565922 60565922 G A MS4A10 Silent p.P219P 0.12 TCGA-BR-A4J5-01 12 132241120 132241120 C T SFSWAP Missense_Mutation p.R551W 0.09 deleterious(0) probably_damaging(0.958) TCGA-BR-A4J5-01 12 31945165 31945165 G A H3F3C 5'UTR 0.14 TCGA-BR-A4J5-01 12 48183343 48183343 G A HDAC7 Missense_Mutation p.R704W 0.07 deleterious(0) probably_damaging(1) TCGA-BR-A4J5-01 12 65462558 65462558 T A WIF1 Missense_Mutation p.K175I 0.13 deleterious(0) probably_damaging(0.998) TCGA-BR-A4J5-01 12 6702280 6702280 G A CHD4 Missense_Mutation p.R877W 0.09 deleterious(0) probably_damaging(0.965) TCGA-BR-A4J5-01 12 75444839 75444839 T G KCNC2 Missense_Mutation p.N316H 0.11 deleterious(0.01) possibly_damaging(0.464) TCGA-BR-A4J5-01 12 9256899 9256899 T C A2M Missense_Mutation p.E401G 0.21 deleterious(0.03) benign(0.013) TCGA-BR-A4J5-01 12 9309893 9309893 T C PZP Missense_Mutation p.E1143G 0.11 deleterious(0.01) probably_damaging(0.995) TCGA-BR-A4J5-01 13 101726011 101726011 C T NALCN Silent p.S1374S 0.09 TCGA-BR-A4J5-01 14 101438462 101438462 G A SNORD114-14 RNA 0.10 TCGA-BR-A4J5-01 14 20920177 20920177 C T OSGEP Missense_Mutation p.A123T 0.08 deleterious(0.01) benign(0.13) TCGA-BR-A4J5-01 14 32560227 32560227 C T ARHGAP5 Missense_Mutation p.R118C 0.15 deleterious(0) probably_damaging(1) TCGA-BR-A4J5-01 14 45645289 45645289 T C FANCM Missense_Mutation p.V1111A 0.05 tolerated(0.21) benign(0.002) TCGA-BR-A4J5-01 14 73006791 73006791 A G RGS6 Missense_Mutation p.T471A 0.16 tolerated(0.29) benign(0.008) TCGA-BR-A4J5-01 14 92900256 92900256 C T SLC24A4 Missense_Mutation p.A81V 0.10 deleterious(0) possibly_damaging(0.905) TCGA-BR-A4J5-01 15 83218237 83218237 C A CPEB1 Missense_Mutation p.D458Y 0.12 deleterious(0) probably_damaging(1) TCGA-BR-A4J5-01 16 1398109 1398109 C T BAIAP3 Silent p.A1089A 0.13 TCGA-BR-A4J5-01 16 24192165 24192165 C T PRKCB Silent p.A483A 0.20 TCGA-BR-A4J5-01 16 24826525 24826525 T C TNRC6A Missense_Mutation p.M1577T 0.17 deleterious(0) benign(0.021) TCGA-BR-A4J5-01 16 67262461 67262461 C T TMEM208 Nonsense_Mutation p.R76* 0.06 TCGA-BR-A4J5-01 17 44832736 44832736 G A NSF Splice_Site p.X738_splice 0.14 TCGA-BR-A4J5-01 17 56598657 56598657 G A SEPT4 Missense_Mutation p.R373W 0.13 deleterious(0) probably_damaging(0.998) TCGA-BR-A4J5-01 17 78357714 78357714 C A RNF213 Missense_Mutation p.H4770N 0.06 benign(0.002) TCGA-BR-A4J5-01 18 34833781 34833781 G A CELF4 Missense_Mutation p.P485L 0.05 deleterious(0) probably_damaging(0.999) TCGA-BR-A4J5-01 19 11289371 11289371 C T KANK2 Silent p.S425S 0.06 TCGA-BR-A4J5-01 19 22155328 22155328 T G ZNF208 Missense_Mutation p.K836N 0.11 tolerated(0.56) unknown(0) TCGA-BR-A4J5-01 19 37975536 37975536 G A ZNF570 Missense_Mutation p.A338T 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-BR-A4J5-01 19 38877509 38877509 G A GGN Silent p.R131R 0.21 TCGA-BR-A4J5-01 19 49842785 49842785 A C CD37 Intron 0.45 TCGA-BR-A4J5-01 19 53793479 53793479 T G BIRC8 Missense_Mutation p.K50T 0.11 deleterious(0.01) possibly_damaging(0.781) TCGA-BR-A4J5-01 1 152327972 152327972 T C FLG2 Missense_Mutation p.R764G 0.09 unknown(0) TCGA-BR-A4J5-01 1 155264449 155264449 C G PKLR Silent p.G263G 0.08 TCGA-BR-A4J5-01 1 157771300 157771300 A C FCRL1 Silent p.G318G 0.10 TCGA-BR-A4J5-01 1 161332163 161332163 G T SDHC Missense_Mutation p.Q150H 0.19 deleterious(0.04) benign(0.042) TCGA-BR-A4J5-01 1 172635150 172635150 G A FASLG Silent p.K280K 0.18 TCGA-BR-A4J5-01 1 177000071 177000071 G T ASTN1 Missense_Mutation p.L295M 0.06 tolerated_low_confidence(0.13) benign(0.062) TCGA-BR-A4J5-01 1 190067860 190067860 C T BRINP3 Missense_Mutation p.R530H 0.06 deleterious(0) probably_damaging(0.996) TCGA-BR-A4J5-01 1 220088789 220088789 G T SLC30A10 3'UTR 0.26 TCGA-BR-A4J5-01 1 231377078 231377078 C A GNPAT 5'UTR 0.07 TCGA-BR-A4J5-01 1 23236928 23236928 G T EPHB2 Silent p.P853P 0.14 TCGA-BR-A4J5-01 1 236908002 236908002 C T ACTN2 Silent p.H444H 0.09 TCGA-BR-A4J5-01 1 242287878 242287878 G T PLD5 Missense_Mutation p.F275L 0.25 tolerated(0.61) benign(0.003) TCGA-BR-A4J5-01 1 27057796 27057796 C T ARID1A Nonsense_Mutation p.Q502* 0.14 TCGA-BR-A4J5-01 1 34254291 34254291 C A CSMD2 Missense_Mutation p.D485Y 0.19 deleterious(0) probably_damaging(0.994) TCGA-BR-A4J5-01 1 63789483 63789483 A G FOXD3 Missense_Mutation p.M252V 0.11 tolerated(0.13) benign(0.049) TCGA-BR-A4J5-01 20 54824192 54824192 T A MC3R Missense_Mutation p.I98N 0.09 deleterious(0) probably_damaging(0.992) TCGA-BR-A4J5-01 20 57766466 57766466 C T ZNF831 Missense_Mutation p.T131M 0.21 tolerated(0.12) benign(0.016) TCGA-BR-A4J5-01 20 62729944 62729944 G A OPRL1 Missense_Mutation p.R302H 0.14 tolerated(1) benign(0.002) TCGA-BR-A4J5-01 2 101009963 101009963 G A CHST10 Missense_Mutation p.P272L 0.14 deleterious(0) probably_damaging(0.999) TCGA-BR-A4J5-01 2 141243057 141243057 C A LRP1B Missense_Mutation p.V3094F 0.11 possibly_damaging(0.727) TCGA-BR-A4J5-01 2 149247795 149247795 C T MBD5 Missense_Mutation p.R1299W 0.12 deleterious_low_confidence(0) unknown(0) TCGA-BR-A4J5-01 2 165381562 165381562 A C GRB14 Silent p.S210S 0.11 TCGA-BR-A4J5-01 2 167055492 167055492 C T SCN9A Missense_Mutation p.R1875Q 0.08 tolerated(0.07) probably_damaging(1) TCGA-BR-A4J5-01 2 170012824 170012824 C T LRP2 Silent p.T4037T 0.07 TCGA-BR-A4J5-01 2 170028565 170028565 C T LRP2 Silent p.G3741G 0.05 TCGA-BR-A4J5-01 2 179648801 179648801 G T TTN Missense_Mutation p.A924D 0.06 TCGA-BR-A4J5-01 2 42936046 42936046 G C MTA3 Missense_Mutation p.Q445H 0.06 tolerated(0.79) benign(0.008) TCGA-BR-A4J5-01 2 48915132 48915132 T G LHCGR Missense_Mutation p.T602P 0.09 deleterious(0) probably_damaging(0.99) TCGA-BR-A4J5-01 2 68873300 68873300 G T PROKR1 Missense_Mutation p.C116F 0.14 deleterious(0.01) possibly_damaging(0.837) TCGA-BR-A4J5-01 2 80529764 80529764 A G LRRTM1 Missense_Mutation p.L394P 0.06 tolerated(0.32) benign(0.02) TCGA-BR-A4J5-01 3 141161876 141161876 C T ZBTB38 Missense_Mutation p.R216C 0.09 deleterious(0.01) possibly_damaging(0.61) TCGA-BR-A4J5-01 3 169550790 169550790 G A LRRIQ4 Missense_Mutation p.R450Q 0.07 deleterious(0.02) benign(0.19) TCGA-BR-A4J5-01 3 17208258 17208258 C T TBC1D5 Splice_Site p.X720_splice 0.09 TCGA-BR-A4J5-01 3 197723129 197723129 C T LMLN Silent p.N377N 0.12 TCGA-BR-A4J5-01 3 41275254 41275254 C T CTNNB1 Nonsense_Mutation p.R474* 0.05 TCGA-BR-A4J5-01 3 4558233 4558233 G A ITPR1 Missense_Mutation p.E20K 0.07 deleterious(0.02) probably_damaging(0.994) TCGA-BR-A4J5-01 3 53856656 53856656 G A CHDH Silent p.S239S 0.08 TCGA-BR-A4J5-01 3 74384030 74384030 G T CNTN3 Missense_Mutation p.N508K 0.06 tolerated(0.57) benign(0.029) TCGA-BR-A4J5-01 3 74384031 74384031 T G CNTN3 Missense_Mutation p.N508T 0.06 tolerated(0.37) benign(0.403) TCGA-BR-A4J5-01 4 134084217 134084217 T C PCDH10 Silent p.S961S 0.13 TCGA-BR-A4J5-01 4 188924059 188924059 G T ZFP42 Missense_Mutation p.S33I 0.11 tolerated(0.06) benign(0.078) TCGA-BR-A4J5-01 4 90874205 90874205 C T MMRN1 Missense_Mutation p.T1108M 0.07 deleterious(0) probably_damaging(0.984) TCGA-BR-A4J5-01 5 140515567 140515567 A C PCDHB5 Missense_Mutation p.N184T 0.10 tolerated_low_confidence(0.13) benign(0.009) TCGA-BR-A4J5-01 5 140517234 140517234 G C PCDHB5 Missense_Mutation p.G740R 0.08 tolerated_low_confidence(0.05) benign(0.238) TCGA-BR-A4J5-01 5 169021159 169021161 AAG - SPDL1 In_Frame_Del p.E183del 0.18 TCGA-BR-A4J5-01 5 17275894 17275894 C T BASP1 Missense_Mutation p.T190M 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-BR-A4J5-01 5 31317787 31317787 G A CDH6 Silent p.T546T 0.09 TCGA-BR-A4J5-01 5 58999482 58999482 T A PDE4D Intron 0.19 TCGA-BR-A4J5-01 5 63509836 63509836 C A RNF180 Nonsense_Mutation p.S228* 0.09 TCGA-BR-A4J5-01 5 79027343 79027343 G T CMYA5 Missense_Mutation p.V919F 0.08 benign(0.261) TCGA-BR-A4J5-01 6 10927498 10927498 G T SYCP2L Missense_Mutation p.M446I 0.07 tolerated(0.38) benign(0.001) TCGA-BR-A4J5-01 6 125583981 125583981 C T TPD52L1 Missense_Mutation p.T163M 0.08 deleterious(0.02) benign(0.305) TCGA-BR-A4J5-01 6 136582225 136582225 G A BCLAF1 3'UTR 0.06 TCGA-BR-A4J5-01 6 151151998 151151998 G A PLEKHG1 Missense_Mutation p.R584H 0.11 deleterious(0) probably_damaging(0.999) TCGA-BR-A4J5-01 6 18225836 18225836 A G DEK 3'UTR 0.10 TCGA-BR-A4J5-01 6 31506924 31506924 C T DDX39B Silent p.Q113Q 0.05 TCGA-BR-A4J5-01 7 131872344 131872344 T G PLXNA4 Missense_Mutation p.K960T 0.09 tolerated(0.34) benign(0.016) TCGA-BR-A4J5-01 7 27195908 27195908 T C HOXA7 Missense_Mutation p.D86G 0.16 tolerated(0.06) benign(0.031) TCGA-BR-A4J5-01 7 44012846 44012846 C T POLR2J4 RNA 0.27 TCGA-BR-A4J5-01 7 86416411 86416411 T C GRM3 Silent p.L435L 0.08 TCGA-BR-A4J5-01 8 116616763 116616763 C G TRPS1 Missense_Mutation p.G478A 0.09 deleterious_low_confidence(0.05) benign(0.014) TCGA-BR-A4J5-01 8 144893160 144893160 G A SCRIB Missense_Mutation p.R397W 0.17 probably_damaging(0.967) TCGA-BR-A4J5-01 8 1904932 1904936 TACCA - ARHGEF10 Frame_Shift_Del p.Y1180Cfs*55 0.09 TCGA-BR-A4J5-01 8 19703225 19703225 G C INTS10 Missense_Mutation p.M631I 0.12 tolerated(0.47) benign(0.026) TCGA-BR-A4J5-01 8 36793187 36793187 G A KCNU1 Missense_Mutation p.E1067K 0.09 tolerated(0.22) benign(0.006) TCGA-BR-A4J5-01 9 116135873 116135873 C A HDHD3 3'UTR 0.10 TCGA-BR-A4J5-01 9 129856054 129856054 C T ANGPTL2 Silent p.L323L 0.11 TCGA-BR-A4J5-01 9 13222275 13222275 C T MPDZ Missense_Mutation p.R235H 0.11 deleterious(0.04) probably_damaging(0.968) TCGA-BR-A4J5-01 9 136083546 136083546 G A OBP2B Missense_Mutation p.T84M 0.08 deleterious(0.05) possibly_damaging(0.73) TCGA-BR-A4J5-01 9 14307263 14307263 A C NFIB Missense_Mutation p.V96G 0.04 deleterious(0) probably_damaging(0.991) TCGA-BR-A4J5-01 9 16419550 16419550 G A BNC2 Missense_Mutation p.R913C 0.05 deleterious(0.03) possibly_damaging(0.818) TCGA-BR-A4J5-01 9 36219904 36219904 T C GNE Missense_Mutation p.S614G 0.13 deleterious_low_confidence(0.04) benign(0.019) TCGA-BR-A4J5-01 9 93375922 93375922 G A DIRAS2 Missense_Mutation p.T63M 0.11 deleterious(0) probably_damaging(1) TCGA-BR-A4J5-01 X 147013989 147013989 A T FMR1 Nonsense_Mutation p.R226* 0.16 TCGA-BR-A4J5-01 X 54497834 54497834 G A FGD1 Missense_Mutation p.R132W 0.12 tolerated_low_confidence(0.13) benign(0) TCGA-BR-A4J5-01 Y 4925415 4925415 C T PCDH11Y Missense_Mutation p.S184L 0.25 deleterious(0.02) possibly_damaging(0.491) TCGA-BR-A4J6-01 11 118944008 118944008 G T VPS11 Missense_Mutation p.D328Y 0.32 deleterious(0.01) possibly_damaging(0.594) TCGA-BR-A4J6-01 11 21596581 21596581 G T NELL1 3'UTR 0.09 TCGA-BR-A4J6-01 12 113355547 113355547 T A OAS1 Intron 0.37 TCGA-BR-A4J6-01 12 46245720 46245720 C T ARID2 Nonsense_Mutation p.R1272* 0.51 TCGA-BR-A4J6-01 14 104165276 104165276 C T XRCC3 Silent p.R300R 0.40 TCGA-BR-A4J6-01 14 20849537 20849537 C T TEP1 Missense_Mutation p.A1528T 0.29 deleterious(0) benign(0.069) TCGA-BR-A4J6-01 14 24592555 24592555 A T DCAF11 3'UTR 0.35 TCGA-BR-A4J6-01 15 85327029 85327029 G A ZNF592 Missense_Mutation p.V375M 0.26 deleterious(0) probably_damaging(0.999) TCGA-BR-A4J6-01 16 75513350 75513350 C A CHST6 Missense_Mutation p.S126I 0.28 deleterious(0) probably_damaging(1) TCGA-BR-A4J6-01 16 85120758 85120758 G C KIAA0513 Missense_Mutation p.G391A 0.21 tolerated(0.38) possibly_damaging(0.881) TCGA-BR-A4J6-01 17 26823469 26823469 C A SLC13A2 Missense_Mutation p.A540D 0.24 deleterious(0) probably_damaging(0.97) TCGA-BR-A4J6-01 17 78013901 78013901 A G CCDC40 Silent p.A128A 0.08 TCGA-BR-A4J6-01 18 331713 331713 C T COLEC12 Missense_Mutation p.R673H 0.24 tolerated(0.18) unknown(0) TCGA-BR-A4J6-01 18 48593406 48593406 G A SMAD4 Missense_Mutation p.G386D 0.45 deleterious(0.01) probably_damaging(1) TCGA-BR-A4J6-01 18 76753965 76753965 G A SALL3 Silent p.T658T 0.56 TCGA-BR-A4J6-01 19 1221993 1221993 T A STK11 Missense_Mutation p.I303N 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-BR-A4J6-01 19 36120513 36120513 G T RBM42 Missense_Mutation p.A74S 0.24 deleterious(0.01) possibly_damaging(0.649) TCGA-BR-A4J6-01 19 9089662 9089662 G T MUC16 Missense_Mutation p.T718N 0.30 unknown(0) TCGA-BR-A4J6-01 1 176659380 176659380 A G PAPPA2 Missense_Mutation p.S749G 0.29 deleterious(0) probably_damaging(0.977) TCGA-BR-A4J6-01 1 19513771 19513771 C A UBR4 Missense_Mutation p.A507S 0.25 benign(0.206) TCGA-BR-A4J6-01 1 21048371 21048371 C T SH2D5 Missense_Mutation p.D396N 0.35 deleterious(0.04) probably_damaging(0.999) TCGA-BR-A4J6-01 1 9661192 9661192 C T TMEM201 Silent p.V212V 0.34 TCGA-BR-A4J6-01 2 132249846 132249846 G C MZT2A Missense_Mutation p.T35S 0.40 deleterious(0.05) benign(0.257) TCGA-BR-A4J6-01 2 150426628 150426628 G A MMADHC Missense_Mutation p.H251Y 0.51 deleterious(0.01) benign(0.297) TCGA-BR-A4J6-01 2 179452394 179452394 A G TTN Silent p.D21214D 0.27 TCGA-BR-A4J6-01 2 27499657 27499657 G A DNAJC5G Missense_Mutation p.V21M 0.19 deleterious(0) probably_damaging(0.944) TCGA-BR-A4J6-01 3 108298210 108298210 C T KIAA1524 Missense_Mutation p.D246N 0.22 tolerated(0.05) probably_damaging(0.979) TCGA-BR-A4J6-01 3 142268402 142268402 T G ATR Silent p.I1030I 0.08 TCGA-BR-A4J6-01 3 41266103 41266103 G A CTNNB1 Missense_Mutation p.G34R 0.11 deleterious(0) probably_damaging(0.997) TCGA-BR-A4J6-01 3 50357457 50357457 G T HYAL2 Nonsense_Mutation p.S155* 0.29 TCGA-BR-A4J6-01 6 112035642 112035642 C T FYN Silent p.V84V 0.21 TCGA-BR-A4J6-01 6 160829854 160829855 - A SLC22A3 Frame_Shift_Ins p.I254Nfs*37 0.22 TCGA-BR-A4J6-01 6 24861261 24861261 T A FAM65B Missense_Mutation p.M190L 0.48 deleterious(0) benign(0.398) TCGA-BR-A4J6-01 7 143056064 143056064 C T FAM131B Missense_Mutation p.G108S 0.23 deleterious(0) probably_damaging(0.976) TCGA-BR-A4J6-01 7 73790499 73790500 - AGG CLIP2 In_Frame_Ins p.E591dup 0.27 TCGA-BR-A4J6-01 7 99580937 99580937 T A AZGP1P1 RNA 0.21 TCGA-BR-A4J6-01 9 107457321 107457321 G T OR13D1 Missense_Mutation p.D207Y 0.27 deleterious(0) probably_damaging(0.996) TCGA-BR-A4J6-01 9 131329027 131329027 C A SPTAN1 Missense_Mutation p.P3Q 0.36 deleterious(0) possibly_damaging(0.894) TCGA-BR-A4J6-01 9 72758553 72758553 T C MAMDC2 Silent p.L408L 0.32 TCGA-BR-A4J6-01 9 86514643 86514643 A C KIF27 Missense_Mutation p.M512R 0.15 tolerated(0.74) benign(0.017) TCGA-BR-A4J6-01 X 55513296 55513296 A G USP51 Silent p.L693L 0.30 TCGA-BR-A4J7-01 10 124742959 124742959 C T PSTK Missense_Mutation p.P227L 0.06 tolerated(0.17) benign(0.203) TCGA-BR-A4J7-01 10 128974037 128974037 G T FAM196A Missense_Mutation p.A208E 0.08 tolerated(0.37) benign(0.421) TCGA-BR-A4J7-01 10 3208440 3208440 C T PITRM1 Silent p.T133T 0.03 TCGA-BR-A4J7-01 10 5978466 5978466 C T FBXO18 Silent p.G1010G 0.05 TCGA-BR-A4J7-01 11 108235869 108235869 C T ATM Nonsense_Mutation p.Q2971* 0.15 TCGA-BR-A4J7-01 11 111951135 111951135 G A C11orf57 Missense_Mutation p.R58Q 0.07 tolerated(0.12) benign(0.105) TCGA-BR-A4J7-01 11 115049385 115049385 G A CADM1 Missense_Mutation p.R397C 0.07 deleterious(0) probably_damaging(0.993) TCGA-BR-A4J7-01 11 119243689 119243689 G A USP2 Missense_Mutation p.R168C 0.06 deleterious_low_confidence(0.01) benign(0.004) TCGA-BR-A4J7-01 12 112605326 112605326 G T HECTD4 Missense_Mutation p.T3964N 0.14 benign(0.421) TCGA-BR-A4J7-01 12 117672461 117672461 G A NOS1 Silent p.L1082L 0.23 TCGA-BR-A4J7-01 12 120784004 120784004 C T MSI1 Silent p.S327S 0.67 TCGA-BR-A4J7-01 12 48439060 48439060 G A SENP1 3'UTR 0.14 TCGA-BR-A4J7-01 12 54677679 54677679 G A HNRNPA1 Missense_Mutation p.G331R 0.07 tolerated(0.12) unknown(0) TCGA-BR-A4J7-01 12 94673283 94673283 C T PLXNC1 Silent p.N1211N 0.16 TCGA-BR-A4J7-01 13 25275019 25275019 G A ATP12A Missense_Mutation p.V620M 0.09 deleterious(0) probably_damaging(1) TCGA-BR-A4J7-01 14 107048684 107048684 A G IGHV3-53 Silent p.Y112Y 0.07 TCGA-BR-A4J7-01 14 77941895 77941895 C T ISM2 3'UTR 0.09 TCGA-BR-A4J7-01 15 72227788 72227788 T C MYO9A Missense_Mutation p.I806V 0.06 tolerated(0.4) benign(0.005) TCGA-BR-A4J7-01 16 70841630 70841630 C T HYDIN Silent p.K5073K 0.04 TCGA-BR-A4J7-01 17 37826401 37826401 C T PNMT Missense_Mutation p.T203M 0.39 deleterious(0.02) probably_damaging(0.933) TCGA-BR-A4J7-01 17 47394442 47394442 T C ZNF652 Missense_Mutation p.S216G 0.05 tolerated(0.29) benign(0.001) TCGA-BR-A4J7-01 17 62018184 62018184 C T SCN4A Missense_Mutation p.A1820T 0.08 tolerated_low_confidence(0.49) benign(0) TCGA-BR-A4J7-01 17 79609404 79609404 G A TSPAN10 5'UTR 0.14 TCGA-BR-A4J7-01 17 79686876 79686876 G T SLC25A10 Missense_Mutation p.A250S 0.09 tolerated(0.07) benign(0.313) TCGA-BR-A4J7-01 18 47812529 47812529 C T CXXC1 Missense_Mutation p.G108R 0.07 tolerated(0.41) benign(0.082) TCGA-BR-A4J7-01 18 63548075 63548075 G A CDH7 Missense_Mutation p.R768H 0.08 tolerated(0.1) probably_damaging(0.996) TCGA-BR-A4J7-01 19 52817462 52817462 C T ZNF480 Silent p.C43C 0.08 TCGA-BR-A4J7-01 19 7975916 7975916 G A MAP2K7 Missense_Mutation p.D243N 0.12 deleterious(0) probably_damaging(1) TCGA-BR-A4J7-01 1 103385904 103385904 G T COL11A1 Missense_Mutation p.P1242Q 0.09 unknown(0) TCGA-BR-A4J7-01 1 154317185 154317185 T G ATP8B2 Missense_Mutation p.L770R 0.17 tolerated(0.43) benign(0.002) TCGA-BR-A4J7-01 1 180794410 180794410 T A XPR1 Missense_Mutation p.M355K 0.10 deleterious(0) possibly_damaging(0.811) TCGA-BR-A4J7-01 1 203054915 203054915 C T MYOG Missense_Mutation p.E59K 0.04 tolerated(0.26) probably_damaging(0.974) TCGA-BR-A4J7-01 1 205884254 205884254 G A SLC26A9 Silent p.S810S 0.06 TCGA-BR-A4J7-01 1 53980408 53980408 G A GLIS1 Silent p.G416G 0.08 TCGA-BR-A4J7-01 1 70509665 70509665 A G LRRC7 Missense_Mutation p.N1295S 0.11 tolerated(0.62) benign(0.005) TCGA-BR-A4J7-01 20 49354417 49354417 T C PARD6B Silent p.F30F 0.06 TCGA-BR-A4J7-01 21 11098760 11098760 T C BAGE2 RNA 0.07 TCGA-BR-A4J7-01 21 45971206 45971206 C T KRTAP10-2 Missense_Mutation p.V46I 0.10 tolerated(0.49) benign(0.355) TCGA-BR-A4J7-01 21 47976977 47976977 G A DIP2A Silent p.L1208L 0.17 TCGA-BR-A4J7-01 2 1488526 1488526 G A TPO Silent p.P499P 0.13 TCGA-BR-A4J7-01 2 169780101 169780101 C T ABCB11 3'UTR 0.12 TCGA-BR-A4J7-01 2 18112991 18112991 T C KCNS3 Missense_Mutation p.V239A 0.10 tolerated(0.41) benign(0.038) TCGA-BR-A4J7-01 2 198949991 198949991 G C PLCL1 Missense_Mutation p.E584Q 0.07 tolerated(0.08) possibly_damaging(0.777) TCGA-BR-A4J7-01 2 238268749 238268749 C T COL6A3 Silent p.P2088P 0.14 TCGA-BR-A4J7-01 3 10078003 10078003 G T FANCD2 Missense_Mutation p.L157F 0.06 deleterious(0) possibly_damaging(0.607) TCGA-BR-A4J7-01 3 119135065 119135065 G A ARHGAP31 Missense_Mutation p.R1430Q 0.06 deleterious(0) probably_damaging(0.997) TCGA-BR-A4J7-01 3 169646274 169646274 A G SAMD7 Missense_Mutation p.N317D 0.04 tolerated(0.6) benign(0.272) TCGA-BR-A4J7-01 3 196386798 196386798 G A NRROS Missense_Mutation p.R95H 0.05 tolerated(0.53) benign(0.007) TCGA-BR-A4J7-01 3 38139256 38139256 G A DLEC1 Missense_Mutation p.V863I 0.08 tolerated(0.13) benign(0.062) TCGA-BR-A4J7-01 4 186380606 186380606 T C CCDC110 Missense_Mutation p.R379G 0.05 tolerated(0.09) benign(0.026) TCGA-BR-A4J7-01 6 111702600 111702600 T C REV3L Missense_Mutation p.I382V 0.06 tolerated(0.05) benign(0.099) TCGA-BR-A4J7-01 6 159456921 159456921 G A TAGAP Nonsense_Mutation p.R712* 0.10 TCGA-BR-A4J7-01 6 38905788 38905788 C T DNAH8 Nonsense_Mutation p.R3651* 0.10 TCGA-BR-A4J7-01 6 90718472 90718472 C T BACH2 Missense_Mutation p.R31Q 0.07 deleterious(0) probably_damaging(0.973) TCGA-BR-A4J7-01 7 34867067 34867067 C T NPSR1 Missense_Mutation p.S178F 0.06 deleterious(0) probably_damaging(0.967) TCGA-BR-A4J7-01 7 87913437 87913437 G A STEAP4 Nonsense_Mutation p.R50* 0.07 TCGA-BR-A4J7-01 7 99054060 99054060 C T CPSF4 Silent p.G249G 0.29 TCGA-BR-A4J7-01 8 124096483 124096483 C T TBC1D31 Missense_Mutation p.A141V 0.15 deleterious(0.01) probably_damaging(0.99) TCGA-BR-A4J7-01 8 144993544 144993544 C T PLEC Missense_Mutation p.R3619H 0.12 probably_damaging(1) TCGA-BR-A4J7-01 8 17415834 17415834 C T SLC7A2 Missense_Mutation p.A449V 0.05 tolerated(0.06) benign(0.287) TCGA-BR-A4J7-01 8 49832989 49832989 G A SNAI2 Missense_Mutation p.P31S 0.12 tolerated(0.1) benign(0.077) TCGA-BR-A4J7-01 8 73850023 73850023 C T KCNB2 Silent p.D811D 0.11 TCGA-BR-A4J7-01 8 95500939 95500939 G A KIAA1429 Nonsense_Mutation p.R1812* 0.10 TCGA-BR-A4J7-01 8 97172648 97172648 G A GDF6 Silent p.R91R 0.12 TCGA-BR-A4J7-01 9 139391716 139391716 G A NOTCH1 Missense_Mutation p.R2159C 0.09 deleterious(0) probably_damaging(0.953) TCGA-BR-A4J7-01 9 8521482 8521482 G A PTPRD Silent p.S252S 0.13 TCGA-BR-A4J7-01 X 150773161 150773161 T G PASD1 Missense_Mutation p.I24M 0.17 tolerated(0.21) benign(0.109) TCGA-BR-A4J7-01 Y 4925448 4925448 C A PCDH11Y Missense_Mutation p.A195D 0.25 deleterious(0) probably_damaging(0.945) TCGA-BR-A4J8-01 10 48388253 48388253 G A RBP3 Silent p.G875G 0.37 TCGA-BR-A4J8-01 10 68940162 68940162 C T CTNNA3 Silent p.T320T 0.14 TCGA-BR-A4J8-01 11 105795326 105795326 G A GRIA4 Missense_Mutation p.V560M 0.23 tolerated(0.05) probably_damaging(0.938) TCGA-BR-A4J8-01 11 126137202 126137202 C T SRPR Missense_Mutation p.A132T 0.06 tolerated(0.06) benign(0.056) TCGA-BR-A4J8-01 11 1271245 1271245 A C MUC5B Missense_Mutation p.T4379P 0.18 possibly_damaging(0.507) TCGA-BR-A4J8-01 11 130331473 130331473 G T ADAMTS15 Missense_Mutation p.E349D 0.10 deleterious(0) probably_damaging(0.999) TCGA-BR-A4J8-01 11 19077528 19077528 C T MRGPRX2 Missense_Mutation p.R141H 0.12 tolerated(0.06) possibly_damaging(0.67) TCGA-BR-A4J8-01 11 36597806 36597806 C G RAG1 Missense_Mutation p.C984W 0.08 deleterious_low_confidence(0.01) benign(0.12) TCGA-BR-A4J8-01 11 4511022 4511022 A T OR52K1 Missense_Mutation p.T298S 0.17 deleterious(0.02) probably_damaging(0.998) TCGA-BR-A4J8-01 11 5758490 5758490 C A OR56B1 Missense_Mutation p.S248R 0.11 deleterious(0.04) benign(0.25) TCGA-BR-A4J8-01 11 58189993 58189993 C T OR5B2 Missense_Mutation p.V248I 0.11 tolerated_low_confidence(1) benign(0.001) TCGA-BR-A4J8-01 11 58318648 58318648 C A LPXN Missense_Mutation p.A131S 0.23 tolerated(0.64) benign(0.001) TCGA-BR-A4J8-01 11 64503430 64503430 G A RASGRP2 Missense_Mutation p.T373M 0.09 deleterious(0) probably_damaging(0.95) TCGA-BR-A4J8-01 11 65269751 65269751 T A MALAT1 RNA 0.16 TCGA-BR-A4J8-01 11 73584464 73584464 T C COA4 Intron 0.23 TCGA-BR-A4J8-01 12 113821937 113821937 A T PLBD2 Nonsense_Mutation p.K329* 0.22 TCGA-BR-A4J8-01 12 4388038 4388038 C T CCND2 Missense_Mutation p.S175F 0.12 deleterious(0.04) benign(0.192) TCGA-BR-A4J8-01 12 52981611 52981611 C T KRT72 Missense_Mutation p.A372T 0.09 tolerated(0.12) benign(0.062) TCGA-BR-A4J8-01 12 55846401 55846401 A G OR6C2 Missense_Mutation p.N135S 0.10 tolerated_low_confidence(0.6) benign(0.027) TCGA-BR-A4J8-01 12 77449854 77449854 T C E2F7 Silent p.E50E 0.22 TCGA-BR-A4J8-01 13 33741704 33741704 G A STARD13 Silent p.Y75Y 0.05 TCGA-BR-A4J8-01 13 86368299 86368299 A G SLITRK6 Missense_Mutation p.L782P 0.05 deleterious(0.04) possibly_damaging(0.794) TCGA-BR-A4J8-01 14 76149995 76149995 C G TTLL5 Missense_Mutation p.P123A 0.50 deleterious(0) probably_damaging(0.986) TCGA-BR-A4J8-01 14 92195816 92195816 G A CATSPERB Missense_Mutation p.S3L 0.11 tolerated(1) benign(0) TCGA-BR-A4J8-01 15 55742448 55742448 C T DYX1C1 Missense_Mutation p.R252H 0.23 deleterious(0) probably_damaging(0.999) TCGA-BR-A4J8-01 15 77472426 77472426 T C PEAK1 Missense_Mutation p.T615A 0.31 tolerated(0.46) benign(0.016) TCGA-BR-A4J8-01 16 11001727 11001727 T A CIITA Missense_Mutation p.L793Q 0.15 deleterious(0) probably_damaging(0.996) TCGA-BR-A4J8-01 16 1552705 1552705 A T TELO2 Silent p.G571G 0.18 TCGA-BR-A4J8-01 16 354351 354351 G A AXIN1 Missense_Mutation p.R403W 0.06 deleterious(0) probably_damaging(1) TCGA-BR-A4J8-01 16 46960947 46960947 C T GPT2 Silent p.F493F 0.18 TCGA-BR-A4J8-01 16 49525056 49525056 C T ZNF423 3'UTR 0.24 TCGA-BR-A4J8-01 16 81944245 81944245 C T PLCG2 Silent p.R618R 0.07 TCGA-BR-A4J8-01 17 17787971 17787971 A C TOM1L2 Missense_Mutation p.S160A 0.07 tolerated(0.05) possibly_damaging(0.463) TCGA-BR-A4J8-01 17 18023036 18023036 G A MYO15A Missense_Mutation p.G308S 0.11 possibly_damaging(0.862) TCGA-BR-A4J8-01 17 21318662 21318662 C T KCNJ12 Missense_Mutation p.A3V 0.08 tolerated_low_confidence(0.13) benign(0.095) TCGA-BR-A4J8-01 17 42636454 42636454 C T FZD2 Silent p.S466S 0.32 TCGA-BR-A4J8-01 17 42744852 42744852 T G C17orf104 Missense_Mutation p.L525V 0.11 tolerated(0.19) benign(0.032) TCGA-BR-A4J8-01 17 60813998 60813998 G T MARCH10 Missense_Mutation p.Q411K 0.12 tolerated(0.93) benign(0.05) TCGA-BR-A4J8-01 17 68172062 68172062 C T KCNJ2 Silent p.I294I 0.17 TCGA-BR-A4J8-01 17 7578266 7578267 - A TP53 Frame_Shift_Ins p.I195Yfs*14 0.39 TCGA-BR-A4J8-01 18 30350466 30350466 T A KLHL14 Missense_Mutation p.Q30L 0.27 tolerated(0.27) possibly_damaging(0.575) TCGA-BR-A4J8-01 18 34833736 34833736 G A CELF4 3'UTR 0.22 TCGA-BR-A4J8-01 18 5397408 5397408 C T EPB41L3 Silent p.T830T 0.14 TCGA-BR-A4J8-01 18 59166663 59166663 A C CDH20 Missense_Mutation p.K164T 0.25 tolerated(0.11) possibly_damaging(0.479) TCGA-BR-A4J8-01 18 9258528 9258528 A G ANKRD12 Missense_Mutation p.T1755A 0.09 tolerated(0.24) benign(0.003) TCGA-BR-A4J8-01 19 14522340 14522340 G A DDX39A Missense_Mutation p.S136F 0.18 deleterious(0) probably_damaging(0.925) TCGA-BR-A4J8-01 19 3924654 3924654 C T ATCAY 3'UTR 0.53 TCGA-BR-A4J8-01 19 8809057 8809057 C T ACTL9 5'UTR 0.10 TCGA-BR-A4J8-01 19 9204308 9204308 T C OR1M1 Silent p.L130L 0.18 TCGA-BR-A4J8-01 1 11888593 11888593 G A CLCN6 Missense_Mutation p.G345S 0.03 deleterious(0) probably_damaging(1) TCGA-BR-A4J8-01 1 11918406 11918406 C T NPPB Missense_Mutation p.E85K 0.11 tolerated(0.86) benign(0.017) TCGA-BR-A4J8-01 1 153333228 153333228 A C S100A9 Missense_Mutation p.T87P 0.13 tolerated(0.08) possibly_damaging(0.862) TCGA-BR-A4J8-01 1 156563293 156563293 C T APOA1BP Silent p.L204L 0.15 TCGA-BR-A4J8-01 1 179033214 179033214 C T FAM20B Nonsense_Mutation p.R243* 0.41 TCGA-BR-A4J8-01 1 214818634 214818634 C T CENPF Silent p.I1907I 0.05 TCGA-BR-A4J8-01 1 229771163 229771163 C T URB2 Missense_Mutation p.T268M 0.45 tolerated(0.28) benign(0.001) TCGA-BR-A4J8-01 1 236175230 236175230 C T NID1 Missense_Mutation p.V840M 0.07 tolerated(0.21) benign(0.018) TCGA-BR-A4J8-01 1 242021853 242021853 C T EXO1 Nonsense_Mutation p.Q197* 0.09 TCGA-BR-A4J8-01 1 27087887 27087905 CACCTCGGCCACCCAGTGG - ARID1A Frame_Shift_Del p.P726Sfs*10 0.31 TCGA-BR-A4J8-01 1 31764770 31764770 T C SNRNP40 Missense_Mutation p.T119A 0.06 tolerated(0.25) benign(0.287) TCGA-BR-A4J8-01 1 66101896 66101896 T C LEPR Missense_Mutation p.F899S 0.07 deleterious(0) probably_damaging(1) TCGA-BR-A4J8-01 1 78958507 78958507 C T PTGFR Missense_Mutation p.R27W 0.07 deleterious(0.05) benign(0.001) TCGA-BR-A4J8-01 20 37203564 37203564 A G RALGAPB Missense_Mutation p.Y1480C 0.46 deleterious(0) probably_damaging(0.999) TCGA-BR-A4J8-01 20 46254163 46254163 G A NCOA3 Missense_Mutation p.D99N 0.09 deleterious(0.03) probably_damaging(0.984) TCGA-BR-A4J8-01 20 47881369 47881369 G A ZNFX1 Missense_Mutation p.R679W 0.14 deleterious(0) probably_damaging(1) TCGA-BR-A4J8-01 20 62126332 62126332 G A EEF1A2 Silent p.I149I 0.07 TCGA-BR-A4J8-01 22 31022488 31022488 C T TCN2 Silent p.L422L 0.07 TCGA-BR-A4J8-01 2 130877735 130877735 G A POTEF Silent p.G118G 0.09 TCGA-BR-A4J8-01 2 135309655 135309655 G A TMEM163 Silent p.S110S 0.08 TCGA-BR-A4J8-01 2 179325944 179325944 G A DFNB59 Silent p.K334K 0.30 TCGA-BR-A4J8-01 2 179593239 179593239 A C TTN Missense_Mutation p.L6472V 0.09 TCGA-BR-A4J8-01 2 186673555 186673555 T G FSIP2 Missense_Mutation p.L6597V 0.16 benign(0.11) TCGA-BR-A4J8-01 2 212576825 212576825 G T ERBB4 Missense_Mutation p.N358K 0.11 deleterious(0.01) probably_damaging(0.994) TCGA-BR-A4J8-01 2 227663060 227663060 C T IRS1 Missense_Mutation p.G132D 0.71 tolerated(0.45) benign(0.209) TCGA-BR-A4J8-01 2 241078539 241078539 G A OTOS 3'UTR 0.18 TCGA-BR-A4J8-01 2 27587343 27587343 A G EIF2B4 Missense_Mutation p.L519P 0.29 deleterious(0.01) probably_damaging(0.983) TCGA-BR-A4J8-01 2 89156979 89156979 C T IGKC Silent p.T73T 0.12 TCGA-BR-A4J8-01 2 96967313 96967313 G A SNRNP200 Silent p.L175L 0.60 TCGA-BR-A4J8-01 3 111667811 111667811 G A PHLDB2 Silent p.P840P 0.08 TCGA-BR-A4J8-01 3 119209420 119209420 G A POGLUT1 Missense_Mutation p.V274I 0.29 tolerated(0.06) possibly_damaging(0.627) TCGA-BR-A4J8-01 3 132172210 132172210 A C DNAJC13 Silent p.I202I 0.07 TCGA-BR-A4J8-01 3 73432887 73432887 G A PDZRN3 Missense_Mutation p.R944W 0.24 deleterious(0) probably_damaging(0.945) TCGA-BR-A4J8-01 4 4543685 4543685 C T STX18 Missense_Mutation p.V3M 0.18 tolerated(1) benign(0.038) TCGA-BR-A4J8-01 4 74367522 74367522 G A AFM Silent p.V555V 0.21 TCGA-BR-A4J8-01 4 81967172 81967172 T A BMP3 Silent p.S199S 0.08 TCGA-BR-A4J8-01 4 8229026 8229026 C T SH3TC1 Silent p.D535D 0.40 TCGA-BR-A4J8-01 5 131607859 131607859 G A PDLIM4 Silent p.V310V 0.15 TCGA-BR-A4J8-01 5 139938226 139938226 C T APBB3 Missense_Mutation p.V476I 0.14 deleterious(0.05) benign(0.017) TCGA-BR-A4J8-01 5 140475721 140475721 C T PCDHB2 Silent p.N449N 0.04 TCGA-BR-A4J8-01 5 157073806 157073806 C T SOX30 Missense_Mutation p.R409H 0.06 deleterious(0) probably_damaging(0.985) TCGA-BR-A4J8-01 5 169021405 169021405 G A SPDL1 Missense_Mutation p.R230H 0.08 tolerated(0.05) possibly_damaging(0.852) TCGA-BR-A4J8-01 5 178548684 178548684 C T ADAMTS2 Silent p.S1052S 0.20 TCGA-BR-A4J8-01 5 32724837 32724837 G A NPR3 Missense_Mutation p.R268Q 0.24 deleterious(0) probably_damaging(0.999) TCGA-BR-A4J8-01 5 65349645 65349645 T C ERBB2IP Silent p.P833P 0.17 TCGA-BR-A4J8-01 6 105573419 105573419 C T BVES Missense_Mutation p.R129Q 0.12 tolerated(0.3) benign(0.015) TCGA-BR-A4J8-01 6 110729555 110729555 C G DDO Missense_Mutation p.G116A 0.09 deleterious(0.03) possibly_damaging(0.722) TCGA-BR-A4J8-01 6 31839132 31839132 C A SLC44A4 Missense_Mutation p.K220N 0.36 deleterious(0.03) probably_damaging(0.947) TCGA-BR-A4J8-01 6 56392430 56392430 G A DST Missense_Mutation p.A3305V 0.24 benign(0.018) TCGA-BR-A4J8-01 6 7586000 7586000 C G DSP Silent p.S2835S 0.29 TCGA-BR-A4J8-01 7 127894645 127894645 G T LEP Silent p.L111L 0.14 TCGA-BR-A4J8-01 7 2977628 2977628 C T CARD11 Silent p.S352S 0.15 TCGA-BR-A4J8-01 7 37283994 37283994 C T ELMO1 Missense_Mutation p.R139Q 0.06 tolerated(0.24) benign(0.093) TCGA-BR-A4J8-01 8 11188977 11188977 C A SLC35G5 Missense_Mutation p.A121E 0.15 deleterious(0) probably_damaging(0.942) TCGA-BR-A4J8-01 8 21767234 21767234 T A DOK2 Missense_Mutation p.D276V 0.37 deleterious(0) possibly_damaging(0.873) TCGA-BR-A4J8-01 8 59764183 59764183 C A TOX Missense_Mutation p.S198I 0.39 deleterious(0.04) benign(0.026) TCGA-BR-A4J8-01 8 70515533 70515533 G T SULF1 Missense_Mutation p.D390Y 0.08 deleterious(0) possibly_damaging(0.82) TCGA-BR-A4J8-01 8 91063919 91063919 C T DECR1 Silent p.D300D 0.34 TCGA-BR-A4J8-01 9 116041256 116041256 C T PRPF4 Silent p.S80S 0.17 TCGA-BR-A4J8-01 9 140343924 140343924 C T NSMF Silent p.T505T 0.10 TCGA-BR-A4J8-01 9 79441533 79441533 G A PRUNE2 Silent p.I208I 0.22 TCGA-BR-A4J8-01 X 125299308 125299308 G A DCAF12L2 Silent p.V200V 0.17 TCGA-BR-A4J8-01 X 135426978 135426978 T C GPR112 Silent p.S371S 0.45 TCGA-BR-A4J8-01 X 151303075 151303075 T A MAGEA10 Nonsense_Mutation p.R340* 0.28 TCGA-BR-A4J8-01 X 151820033 151820033 C T GABRQ Missense_Mutation p.R316W 0.46 deleterious(0.02) benign(0.284) TCGA-BR-A4J8-01 X 37586943 37586943 A G XK Missense_Mutation p.N188S 0.10 tolerated(0.18) possibly_damaging(0.669) TCGA-BR-A4J8-01 X 601735 601735 C T SHOX Silent p.G182G 0.21 TCGA-BR-A4J8-01 X 83362033 83362033 G A RPS6KA6 Missense_Mutation p.P376L 0.39 deleterious(0.01) possibly_damaging(0.752) TCGA-BR-A4J9-01 10 105363177 105363177 G A SH3PXD2A Missense_Mutation p.R572W 0.07 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-BR-A4J9-01 11 12231042 12231042 A G MICAL2 Splice_Site p.X197_splice 0.13 TCGA-BR-A4J9-01 11 63669763 63669763 G A MARK2 Missense_Mutation p.V399M 0.06 deleterious(0.01) probably_damaging(0.953) TCGA-BR-A4J9-01 12 118588884 118588884 A G TAOK3 Missense_Mutation p.I872T 0.07 deleterious(0.05) benign(0.013) TCGA-BR-A4J9-01 13 106124954 106124954 C T DAOA Silent p.D67D 0.11 TCGA-BR-A4J9-01 15 66795818 66795818 G A RPL4 Missense_Mutation p.S18F 0.12 deleterious(0.02) benign(0.04) TCGA-BR-A4J9-01 16 20373807 20373807 G A PDILT Silent p.I445I 0.12 TCGA-BR-A4J9-01 16 31499977 31499977 C T SLC5A2 Silent p.A388A 0.09 TCGA-BR-A4J9-01 16 68842751 68842752 TG - CDH1 Splice_Site p.X229_splice 0.16 TCGA-BR-A4J9-01 16 70841641 70841641 G A HYDIN Missense_Mutation p.R5070W 0.07 probably_damaging(0.942) TCGA-BR-A4J9-01 16 7760726 7760726 C T RBFOX1 Silent p.Y412Y 0.13 TCGA-BR-A4J9-01 18 44559508 44559508 C T TCEB3B Missense_Mutation p.A710T 0.09 deleterious(0.04) possibly_damaging(0.811) TCGA-BR-A4J9-01 18 55711848 55711848 A C NEDD4L 5'UTR 0.07 TCGA-BR-A4J9-01 19 31770061 31770061 T A TSHZ3 Missense_Mutation p.K213M 0.11 deleterious(0) probably_damaging(0.999) TCGA-BR-A4J9-01 19 5206729 5206729 G A PTPRS 3'UTR 0.08 TCGA-BR-A4J9-01 19 52569714 52569714 C A ZNF841 Missense_Mutation p.G474V 0.18 tolerated(0.57) benign(0.283) TCGA-BR-A4J9-01 1 110458286 110458286 A G CSF1 Missense_Mutation p.I65V 0.05 tolerated(0.34) possibly_damaging(0.848) TCGA-BR-A4J9-01 1 115576672 115576672 A T TSHB Missense_Mutation p.T81S 0.05 tolerated(0.08) probably_damaging(0.996) TCGA-BR-A4J9-01 1 12954935 12954935 C T PRAMEF10 Nonsense_Mutation p.W116* 0.16 TCGA-BR-A4J9-01 1 152279767 152279767 G A FLG Missense_Mutation p.S2532L 0.18 benign(0.388) TCGA-BR-A4J9-01 1 160466054 160466054 G A SLAMF6 Missense_Mutation p.T60I 0.20 tolerated(0.21) benign(0.434) TCGA-BR-A4J9-01 1 193150099 193150099 A T B3GALT2 Missense_Mutation p.N198K 0.08 tolerated(0.92) benign(0.009) TCGA-BR-A4J9-01 1 207110678 207110678 A - PIGR Frame_Shift_Del p.L270Cfs*42 0.12 TCGA-BR-A4J9-01 1 246805283 246805283 C T CNST Missense_Mutation p.T294M 0.26 tolerated(0.22) benign(0.102) TCGA-BR-A4J9-01 1 34164386 34164386 G A CSMD2 Missense_Mutation p.R1258W 0.05 deleterious(0) probably_damaging(1) TCGA-BR-A4J9-01 20 52570210 52570211 - A BCAS1 Frame_Shift_Ins p.I481Yfs*7 0.14 TCGA-BR-A4J9-01 20 62196961 62196961 C T HELZ2 Missense_Mutation p.D1072N 0.14 deleterious(0) probably_damaging(0.982) TCGA-BR-A4J9-01 22 38120627 38120627 C A TRIOBP Missense_Mutation p.S688R 0.12 deleterious_low_confidence(0.01) benign(0.03) TCGA-BR-A4J9-01 2 168100235 168100235 C T XIRP2 Missense_Mutation p.P778L 0.11 probably_damaging(0.979) TCGA-BR-A4J9-01 2 74043255 74043255 A C C2orf78 Missense_Mutation p.Q635H 0.21 deleterious(0.01) probably_damaging(0.989) TCGA-BR-A4J9-01 3 100569516 100569516 T C ABI3BP Missense_Mutation p.R430G 0.09 deleterious(0.04) benign(0.152) TCGA-BR-A4J9-01 3 112357658 112357658 C T CCDC80 Silent p.T365T 0.12 TCGA-BR-A4J9-01 3 122002875 122002875 A G CASR Missense_Mutation p.I702V 0.07 tolerated(0.27) benign(0.075) TCGA-BR-A4J9-01 3 135969379 135969379 T A PCCB Silent p.R54R 0.18 TCGA-BR-A4J9-01 3 384687 384687 A G CHL1 Missense_Mutation p.S234G 0.11 tolerated(0.29) benign(0.011) TCGA-BR-A4J9-01 3 7340396 7340396 G A GRM7 Silent p.V254V 0.05 TCGA-BR-A4J9-01 4 183245189 183245189 C T TENM3 Missense_Mutation p.R6C 0.11 tolerated_low_confidence(0.21) possibly_damaging(0.689) TCGA-BR-A4J9-01 4 47939455 47939455 G T CNGA1 Missense_Mutation p.S421R 0.08 deleterious(0) probably_damaging(0.994) TCGA-BR-A4J9-01 6 42893006 42893006 G A PTCRA Silent p.P144P 0.19 TCGA-BR-A4J9-01 6 70942333 70942333 G A COL9A1 Missense_Mutation p.P819L 0.10 probably_damaging(1) TCGA-BR-A4J9-01 7 122341919 122341919 G C RNF148 Missense_Mutation p.P296A 0.07 deleterious(0) probably_damaging(0.998) TCGA-BR-A4J9-01 7 154774957 154774957 G A PAXIP1 Missense_Mutation p.T137M 0.10 deleterious(0) probably_damaging(0.999) TCGA-BR-A4J9-01 7 45109500 45109500 C T CCM2 Silent p.L250L 0.10 TCGA-BR-A4J9-01 8 120581524 120581524 C A ENPP2 Missense_Mutation p.L720F 0.05 deleterious(0.04) benign(0.013) TCGA-BR-A4J9-01 8 27779752 27779752 C T SCARA5 Silent p.P84P 0.09 TCGA-BR-A4J9-01 8 56436562 56436562 C T XKR4 Missense_Mutation p.P577S 0.05 tolerated(0.15) benign(0.051) TCGA-BR-A4J9-01 9 101891142 101891142 C T TGFBR1 Nonsense_Mutation p.Q35* 0.10 TCGA-BR-A4J9-01 9 35556349 35556349 G A RUSC2 Missense_Mutation p.D963N 0.18 deleterious(0) probably_damaging(0.995) TCGA-BR-A4J9-01 X 129518847 129518847 G C GPR119 Missense_Mutation p.A192G 0.22 deleterious(0) probably_damaging(0.999) TCGA-BR-A4J9-01 X 149826372 149826372 G A MTM1 Missense_Mutation p.G378R 0.22 deleterious(0) probably_damaging(1) TCGA-BR-A4J9-01 X 37027151 37027151 G A FAM47C Missense_Mutation p.R223H 0.18 tolerated(0.67) benign(0.058) TCGA-BR-A4PD-01 10 106974370 106974370 A C SORCS3 Missense_Mutation p.E849A 0.31 deleterious(0) possibly_damaging(0.479) TCGA-BR-A4PD-01 10 112838845 112838845 C T ADRA2A Missense_Mutation p.P364L 0.45 tolerated(0.3) benign(0.04) TCGA-BR-A4PD-01 10 124377558 124377558 A G DMBT1 Silent p.R1510R 0.14 TCGA-BR-A4PD-01 10 127797193 127797193 C T ADAM12 Missense_Mutation p.R240Q 0.20 deleterious(0) probably_damaging(1) TCGA-BR-A4PD-01 10 20335863 20335863 T G PLXDC2 Missense_Mutation p.D130E 0.05 tolerated(1) benign(0.003) TCGA-BR-A4PD-01 10 32197485 32197485 A G ARHGAP12 Missense_Mutation p.L100P 0.25 tolerated(0.08) benign(0.392) TCGA-BR-A4PD-01 10 70733310 70733310 T G DDX21 Missense_Mutation p.S520A 0.15 tolerated(0.1) benign(0.401) TCGA-BR-A4PD-01 11 101375029 101375029 A C TRPC6 Missense_Mutation p.I224S 0.19 deleterious(0) possibly_damaging(0.488) TCGA-BR-A4PD-01 11 10651144 10651144 T C MRVI1 Missense_Mutation p.E172G 0.26 deleterious(0) probably_damaging(0.999) TCGA-BR-A4PD-01 11 123908974 123908974 G A OR10G7 Silent p.I245I 0.52 TCGA-BR-A4PD-01 11 46895281 46895281 T A LRP4 Intron 0.54 TCGA-BR-A4PD-01 11 49208305 49208305 A C FOLH1 Missense_Mutation p.V177G 0.15 deleterious(0) probably_damaging(0.977) TCGA-BR-A4PD-01 11 5080572 5080572 A C OR52E2 Missense_Mutation p.F96V 0.15 deleterious(0) probably_damaging(0.914) TCGA-BR-A4PD-01 11 5153615 5153615 G A OR52A5 Silent p.I86I 0.24 TCGA-BR-A4PD-01 11 5372892 5372892 A T OR51B6 Missense_Mutation p.N52I 0.42 deleterious(0.01) benign(0.002) TCGA-BR-A4PD-01 11 56000269 56000269 A G OR5T2 Silent p.I131I 0.08 TCGA-BR-A4PD-01 11 56000483 56000483 A C OR5T2 Missense_Mutation p.L60R 0.31 tolerated(0.35) benign(0.005) TCGA-BR-A4PD-01 11 58919526 58919526 C T FAM111A Missense_Mutation p.R129C 0.15 tolerated(0.24) benign(0.001) TCGA-BR-A4PD-01 11 59210757 59210757 T C OR5A1 Missense_Mutation p.L39P 0.34 deleterious(0) possibly_damaging(0.677) TCGA-BR-A4PD-01 11 64875883 64875883 G A VPS51 Missense_Mutation p.G314S 0.30 tolerated(0.23) benign(0.007) TCGA-BR-A4PD-01 11 72292506 72292506 T G PDE2A Missense_Mutation p.K647T 0.47 deleterious(0) probably_damaging(0.922) TCGA-BR-A4PD-01 11 73979244 73979244 C T P4HA3 Missense_Mutation p.G504R 0.09 deleterious(0) probably_damaging(0.966) TCGA-BR-A4PD-01 11 7960800 7960800 T G OR10A3 Missense_Mutation p.T90P 0.34 tolerated(0.06) benign(0.421) TCGA-BR-A4PD-01 12 10228175 10228175 A G CLEC1A Silent p.S157S 0.14 TCGA-BR-A4PD-01 12 10233966 10233966 A G CLEC1A Silent p.S87S 0.38 TCGA-BR-A4PD-01 12 114823305 114823305 A G TBX5 Missense_Mutation p.L244P 0.23 deleterious(0.02) probably_damaging(0.945) TCGA-BR-A4PD-01 12 119594441 119594441 C A SRRM4 Missense_Mutation p.S558R 0.43 deleterious_low_confidence(0) unknown(0) TCGA-BR-A4PD-01 12 132325197 132325197 A G MMP17 Missense_Mutation p.S168G 0.09 tolerated(0.42) benign(0.097) TCGA-BR-A4PD-01 12 20833005 20833005 A T PDE3A Missense_Mutation p.T1076S 0.22 deleterious(0.05) possibly_damaging(0.677) TCGA-BR-A4PD-01 12 31555507 31555507 C A DENND5B Missense_Mutation p.W958C 0.24 deleterious(0) probably_damaging(1) TCGA-BR-A4PD-01 12 3768756 3768756 T C EFCAB4B Missense_Mutation p.S246G 0.49 tolerated(0.06) benign(0.068) TCGA-BR-A4PD-01 12 40651103 40651103 T G LRRK2 Missense_Mutation p.L448V 0.19 tolerated(0.2) benign(0.046) TCGA-BR-A4PD-01 12 41900255 41900255 T C PDZRN4 Intron 0.42 TCGA-BR-A4PD-01 12 56351803 56351803 G A PMEL Silent p.L179L 0.24 TCGA-BR-A4PD-01 12 8672825 8672825 T G CLEC4D Missense_Mutation p.F130V 0.44 deleterious(0.04) possibly_damaging(0.896) TCGA-BR-A4PD-01 13 110827648 110827648 A C COL4A1 Missense_Mutation p.L1039V 0.31 benign(0.345) TCGA-BR-A4PD-01 13 26620593 26620593 G A SHISA2 3'UTR 0.41 TCGA-BR-A4PD-01 13 26620594 26620594 A G SHISA2 3'UTR 0.42 TCGA-BR-A4PD-01 13 36776025 36776025 T C SOHLH2 Missense_Mutation p.K162R 0.27 tolerated(0.29) benign(0.003) TCGA-BR-A4PD-01 13 38156507 38156507 C T POSTN Missense_Mutation p.R463H 0.37 deleterious(0.03) probably_damaging(0.988) TCGA-BR-A4PD-01 13 38211441 38211441 A G TRPC4 Missense_Mutation p.F850L 0.34 tolerated_low_confidence(0.73) benign(0.051) TCGA-BR-A4PD-01 13 61986482 61986482 A C PCDH20 Missense_Mutation p.L584V 0.25 tolerated(0.08) benign(0.019) TCGA-BR-A4PD-01 13 95055503 95055503 T A GPC6 3'UTR 0.38 TCGA-BR-A4PD-01 14 106208479 106208479 C T IGHG1 Missense_Mutation p.E141K 0.12 tolerated(1) benign(0.014) TCGA-BR-A4PD-01 15 22383054 22383054 G A OR4N4 Silent p.V194V 0.13 TCGA-BR-A4PD-01 15 25351684 25351684 A - SNORD116-29 RNA 0.39 TCGA-BR-A4PD-01 15 38643621 38643621 A - SPRED1 Frame_Shift_Del p.Y364Ffs*42 0.35 TCGA-BR-A4PD-01 15 75093259 75093259 A G CSK Missense_Mutation p.M240V 0.57 deleterious(0) benign(0.156) TCGA-BR-A4PD-01 15 90770838 90770838 G A SEMA4B Missense_Mutation p.A580T 0.38 tolerated(0.64) benign(0.001) TCGA-BR-A4PD-01 16 21060984 21060984 G T DNAH3 Missense_Mutation p.S1456Y 0.28 deleterious(0) probably_damaging(0.999) TCGA-BR-A4PD-01 16 27473757 27473757 C A GTF3C1 Missense_Mutation p.G1992V 0.30 deleterious(0) possibly_damaging(0.874) TCGA-BR-A4PD-01 16 30594001 30594001 G A ZNF785 Silent p.S366S 0.18 TCGA-BR-A4PD-01 16 3640167 3640167 C T SLX4 Missense_Mutation p.D1158N 0.09 deleterious(0) probably_damaging(1) TCGA-BR-A4PD-01 16 55862812 55862812 C T CES1 Missense_Mutation p.G43R 0.09 deleterious(0) probably_damaging(0.979) TCGA-BR-A4PD-01 16 68293580 68293580 C A PLA2G15 3'UTR 0.07 TCGA-BR-A4PD-01 16 77913091 77913091 G A VAT1L Silent p.E284E 0.30 TCGA-BR-A4PD-01 16 81922830 81922830 T G PLCG2 Missense_Mutation p.I273M 0.57 tolerated(0.07) probably_damaging(0.926) TCGA-BR-A4PD-01 16 85839504 85839504 G T COX4I1 Intron 0.17 TCGA-BR-A4PD-01 16 89916733 89916733 G A SPIRE2 Missense_Mutation p.A104T 0.46 tolerated(0.22) probably_damaging(0.948) TCGA-BR-A4PD-01 17 10215932 10215932 C T MYH13 Missense_Mutation p.A1442T 0.62 deleterious(0.04) benign(0.007) TCGA-BR-A4PD-01 17 11687713 11687713 T G DNAH9 Missense_Mutation p.F2640V 0.28 benign(0.074) TCGA-BR-A4PD-01 17 2235606 2235606 C T TSR1 Silent p.G451G 0.16 TCGA-BR-A4PD-01 17 30205307 30205307 C G UTP6 Missense_Mutation p.E363Q 0.68 tolerated(0.08) benign(0.066) TCGA-BR-A4PD-01 17 71361524 71361524 A G SDK2 Silent p.A1726A 0.22 TCGA-BR-A4PD-01 17 73847660 73847660 T C WBP2 Missense_Mutation p.T53A 0.04 deleterious(0.01) probably_damaging(0.986) TCGA-BR-A4PD-01 17 7579414 7579414 C T TP53 Nonsense_Mutation p.W91* 0.61 TCGA-BR-A4PD-01 17 76488800 76488800 C T DNAH17 Silent p.P2138P 0.31 TCGA-BR-A4PD-01 17 8794052 8794052 T C PIK3R5 Intron 0.59 TCGA-BR-A4PD-01 18 22642649 22642649 A G ZNF521 3'UTR 0.25 TCGA-BR-A4PD-01 18 3729300 3729300 C T DLGAP1 Missense_Mutation p.V476M 0.47 tolerated(0.82) benign(0.066) TCGA-BR-A4PD-01 18 61465873 61465873 A G SERPINB7 Missense_Mutation p.S164G 0.53 tolerated(0.11) possibly_damaging(0.46) TCGA-BR-A4PD-01 19 10943724 10943724 G A TMED1 Nonsense_Mutation p.Q211* 0.43 TCGA-BR-A4PD-01 19 22170054 22170054 T G ZNF208 Missense_Mutation p.N64H 0.19 tolerated(0.15) probably_damaging(0.919) TCGA-BR-A4PD-01 19 22586215 22586215 C T ZNF98 Missense_Mutation p.E44K 0.32 deleterious(0) benign(0.303) TCGA-BR-A4PD-01 19 42801375 42801375 G C PAFAH1B3 Missense_Mutation p.T184S 0.07 tolerated(0.3) benign(0.059) TCGA-BR-A4PD-01 19 44933946 44933946 C T ZNF229 Missense_Mutation p.R337H 0.40 tolerated(1) benign(0) TCGA-BR-A4PD-01 19 52034441 52034441 A G SIGLEC6 Missense_Mutation p.S134P 0.08 tolerated(0.24) benign(0.02) TCGA-BR-A4PD-01 19 5221118 5221118 C T PTPRS Nonsense_Mutation p.W1116* 0.17 TCGA-BR-A4PD-01 19 53741537 53741541 CTCTG - ZNF677 Frame_Shift_Del p.Q147Cfs*6 0.44 TCGA-BR-A4PD-01 19 54198501 54198501 T G MIR519B RNA 0.21 TCGA-BR-A4PD-01 19 55349043 55349043 A T KIR2DS4 Missense_Mutation p.K28I 0.87 deleterious_low_confidence(0) probably_damaging(0.928) TCGA-BR-A4PD-01 19 57027765 57027765 C T ZNF471 Missense_Mutation p.S52L 0.09 deleterious(0.02) probably_damaging(0.966) TCGA-BR-A4PD-01 19 57066876 57066876 C A ZFP28 3'UTR 0.05 TCGA-BR-A4PD-01 19 58084403 58084403 C G ZNF416 Missense_Mutation p.R290T 0.19 deleterious(0.04) probably_damaging(0.998) TCGA-BR-A4PD-01 19 58989171 58989171 C T ZNF446 Silent p.P170P 0.10 TCGA-BR-A4PD-01 19 7689226 7689226 T C XAB2 Missense_Mutation p.K310E 0.21 tolerated(0.27) benign(0.313) TCGA-BR-A4PD-01 1 104160603 104160603 A G AMY2A Missense_Mutation p.I66V 0.64 tolerated(0.88) benign(0.001) TCGA-BR-A4PD-01 1 145112423 145112423 A C SEC22B RNA 0.09 TCGA-BR-A4PD-01 1 149858569 149858569 C T HIST2H2AC Silent p.A15A 0.05 TCGA-BR-A4PD-01 1 152191301 152191301 T C HRNR Missense_Mutation p.K935R 0.17 unknown(0) TCGA-BR-A4PD-01 1 152279828 152279828 T G FLG Missense_Mutation p.S2512R 0.15 probably_damaging(0.981) TCGA-BR-A4PD-01 1 152800031 152800031 A G LCE1A Missense_Mutation p.K28R 0.12 deleterious_low_confidence(0) unknown(0) TCGA-BR-A4PD-01 1 152883259 152883259 A G IVL Missense_Mutation p.Q329R 0.33 tolerated(0.08) benign(0.444) TCGA-BR-A4PD-01 1 158324361 158324361 T G CD1E Missense_Mutation p.F85V 0.18 deleterious(0) possibly_damaging(0.471) TCGA-BR-A4PD-01 1 181620513 181620513 T G CACNA1E Missense_Mutation p.F331V 0.38 deleterious(0) possibly_damaging(0.637) TCGA-BR-A4PD-01 1 201868803 201868803 G T LMOD1 Silent p.T446T 0.12 TCGA-BR-A4PD-01 1 206592741 206592741 C T SRGAP2 Silent p.C400C 0.49 TCGA-BR-A4PD-01 1 5951034 5951034 C T NPHP4 Missense_Mutation p.G733D 0.80 deleterious(0) probably_damaging(1) TCGA-BR-A4PD-01 20 31623461 31623461 A C BPIFB6 Missense_Mutation p.K187T 0.13 deleterious(0) possibly_damaging(0.804) TCGA-BR-A4PD-01 20 43552831 43552831 C T PABPC1L Silent p.D302D 0.57 TCGA-BR-A4PD-01 20 4705530 4705530 C T PRND Silent p.A111A 0.13 TCGA-BR-A4PD-01 20 55027331 55027331 G A CASS4 Missense_Mutation p.E367K 0.16 tolerated(0.18) benign(0.008) TCGA-BR-A4PD-01 20 62848549 62848549 C T MYT1 Silent p.Y587Y 0.39 TCGA-BR-A4PD-01 21 28216851 28216851 G A ADAMTS1 Silent p.L141L 0.30 TCGA-BR-A4PD-01 21 31768881 31768881 T G KRTAP13-1 Silent p.S159S 0.30 TCGA-BR-A4PD-01 22 24582117 24582117 G A SUSD2 Silent p.T491T 0.37 TCGA-BR-A4PD-01 22 30731741 30731741 C T SF3A1 Missense_Mutation p.G703D 0.26 tolerated(0.08) benign(0.381) TCGA-BR-A4PD-01 22 42322215 42322215 C T TNFRSF13C Missense_Mutation p.G86D 0.35 tolerated(0.11) benign(0.027) TCGA-BR-A4PD-01 22 45132666 45132666 C T PRR5 Missense_Mutation p.R259C 0.27 tolerated(0.09) possibly_damaging(0.891) TCGA-BR-A4PD-01 22 46776852 46776852 C T CELSR1 Silent p.R2363R 0.30 TCGA-BR-A4PD-01 2 152522764 152522764 T G NEB Missense_Mutation p.K1624T 0.17 benign(0.445) TCGA-BR-A4PD-01 2 168103939 168103939 A T XIRP2 Nonsense_Mutation p.R2013* 0.34 TCGA-BR-A4PD-01 2 179584017 179584017 T G TTN Missense_Mutation p.S8034R 0.15 TCGA-BR-A4PD-01 2 1893197 1893197 T G MYT1L Missense_Mutation p.K777T 0.24 deleterious(0) possibly_damaging(0.856) TCGA-BR-A4PD-01 2 212248447 212248447 T A ERBB4 Missense_Mutation p.I1274F 0.20 tolerated(0.59) benign(0.009) TCGA-BR-A4PD-01 2 223158949 223158949 T C PAX3 Missense_Mutation p.K175E 0.27 tolerated(0.2) benign(0.228) TCGA-BR-A4PD-01 2 228416831 228416831 A C AGFG1 Missense_Mutation p.N536T 0.22 deleterious(0) possibly_damaging(0.507) TCGA-BR-A4PD-01 2 33500954 33500954 A G LTBP1 Missense_Mutation p.S986G 0.12 tolerated(0.13) benign(0.314) TCGA-BR-A4PD-01 2 70520772 70520772 C A SNRPG Missense_Mutation p.A4S 0.11 tolerated(0.09) benign(0.033) TCGA-BR-A4PD-01 2 73453020 73453023 GGAG - SMYD5 Frame_Shift_Del p.E402Kfs*13 0.22 TCGA-BR-A4PD-01 2 88888295 88888295 T G EIF2AK3 Missense_Mutation p.K430N 0.14 tolerated(0.1) benign(0.094) TCGA-BR-A4PD-01 2 89459283 89459283 T C IGKV6-21 Silent p.E98E 0.18 TCGA-BR-A4PD-01 2 89475957 89475957 A G IGKV2-24 Missense_Mutation p.L72P 0.22 deleterious(0) probably_damaging(0.999) TCGA-BR-A4PD-01 3 11348463 11348463 T G ATG7 Missense_Mutation p.Y88D 0.41 tolerated(0.17) benign(0.121) TCGA-BR-A4PD-01 3 121255950 121255950 G A POLQ Missense_Mutation p.S246F 0.21 deleterious(0.03) possibly_damaging(0.481) TCGA-BR-A4PD-01 3 130743848 130743848 C A ASTE1 Missense_Mutation p.Q101H 0.46 deleterious(0.03) probably_damaging(0.99) TCGA-BR-A4PD-01 3 138382755 138382756 - T PIK3CB Frame_Shift_Ins p.T930Nfs*8 0.22 TCGA-BR-A4PD-01 3 140277549 140277549 A T CLSTN2 Missense_Mutation p.I631F 0.15 deleterious(0.02) benign(0) TCGA-BR-A4PD-01 3 174814732 174814732 C A NAALADL2 Missense_Mutation p.L66I 0.24 tolerated(0.06) benign(0.01) TCGA-BR-A4PD-01 3 38040404 38040406 GCT - VILL In_Frame_Del p.G315_F316delinsV 0.47 TCGA-BR-A4PD-01 3 97806523 97806523 T G OR5AC2 Silent p.T169T 0.14 TCGA-BR-A4PD-01 4 109667632 109667632 A C ETNPPL Missense_Mutation p.L409R 0.19 deleterious(0) probably_damaging(0.986) TCGA-BR-A4PD-01 4 183714423 183714423 A G TENM3 Missense_Mutation p.R2200G 0.36 deleterious(0) possibly_damaging(0.587) TCGA-BR-A4PD-01 4 20597367 20597367 T G SLIT2 Missense_Mutation p.F1077C 0.20 tolerated(0.11) possibly_damaging(0.471) TCGA-BR-A4PD-01 4 40752722 40752722 C G NSUN7 Silent p.S4S 0.24 TCGA-BR-A4PD-01 4 46967016 46967016 T C GABRA4 Missense_Mutation p.R369G 0.33 tolerated(0.31) benign(0.099) TCGA-BR-A4PD-01 4 47574206 47574206 G T ATP10D Missense_Mutation p.A1067S 0.24 deleterious(0.01) possibly_damaging(0.786) TCGA-BR-A4PD-01 4 48894870 48894870 G A OCIAD2 Missense_Mutation p.S101L 0.09 deleterious(0) possibly_damaging(0.621) TCGA-BR-A4PD-01 4 71063822 71063822 T G ODAM Missense_Mutation p.V108G 0.37 deleterious(0.01) benign(0.003) TCGA-BR-A4PD-01 4 71844993 71844993 T C MOB1B Silent p.F191F 0.37 TCGA-BR-A4PD-01 5 140237357 140237357 C A PCDHA10 Missense_Mutation p.A575E 0.20 tolerated_low_confidence(0.07) benign(0.006) TCGA-BR-A4PD-01 5 156907962 156907962 T G ADAM19 Missense_Mutation p.I918L 0.18 deleterious_low_confidence(0.02) benign(0.117) TCGA-BR-A4PD-01 5 169810628 169810628 G A KCNMB1 Intron 0.67 TCGA-BR-A4PD-01 5 172744700 172744700 G A STC2 3'UTR 0.54 TCGA-BR-A4PD-01 5 33637847 33637847 T C ADAMTS12 Missense_Mutation p.K575E 0.23 tolerated(0.17) benign(0.17) TCGA-BR-A4PD-01 6 152651681 152651681 T G SYNE1 Missense_Mutation p.Q4713H 0.20 possibly_damaging(0.479) TCGA-BR-A4PD-01 6 153075391 153075391 T C VIP Silent p.A66A 0.13 TCGA-BR-A4PD-01 6 169623453 169623453 A T THBS2 Missense_Mutation p.M964K 0.29 deleterious(0.01) possibly_damaging(0.717) TCGA-BR-A4PD-01 6 26104229 26104229 C T HIST1H4C Silent p.R18R 0.31 TCGA-BR-A4PD-01 6 32049829 32049829 C T RNA5SP206 5'Flank 0.29 TCGA-BR-A4PD-01 6 46658993 46658993 A G TDRD6 Missense_Mutation p.K1043R 0.34 tolerated(0.41) benign(0.074) TCGA-BR-A4PD-01 6 75797366 75797366 T C COL12A1 Silent p.G3036G 0.13 TCGA-BR-A4PD-01 7 106508733 106508733 G A PIK3CG Missense_Mutation p.A243T 0.27 tolerated(0.58) benign(0.003) TCGA-BR-A4PD-01 7 117246774 117246774 C T CFTR Silent p.D985D 0.16 TCGA-BR-A4PD-01 7 131864619 131864619 A C PLXNA4 Missense_Mutation p.L1234R 0.83 deleterious(0) probably_damaging(0.988) TCGA-BR-A4PD-01 7 138546176 138546176 C G KIAA1549 Silent p.V1652V 0.14 TCGA-BR-A4PD-01 7 147869394 147869394 T G CNTNAP2 Missense_Mutation p.V945G 0.58 tolerated(0.12) benign(0.141) TCGA-BR-A4PD-01 7 148427251 148427251 A C CUL1 Missense_Mutation p.K13Q 0.65 deleterious(0.04) possibly_damaging(0.548) TCGA-BR-A4PD-01 7 66413649 66413649 C A TMEM248 Silent p.L188L 0.34 TCGA-BR-A4PD-01 7 82784787 82784787 A G PCLO Silent p.A390A 0.22 TCGA-BR-A4PD-01 7 86416183 86416183 T C GRM3 Missense_Mutation p.F359L 0.10 deleterious(0) probably_damaging(0.96) TCGA-BR-A4PD-01 7 86416411 86416411 T C GRM3 Silent p.L435L 0.06 TCGA-BR-A4PD-01 7 86539267 86539267 T G KIAA1324L Missense_Mutation p.K740N 0.13 tolerated(0.24) possibly_damaging(0.577) TCGA-BR-A4PD-01 7 87080948 87080948 A C ABCB4 Silent p.V233V 0.04 TCGA-BR-A4PD-01 7 87145893 87145893 C A ABCB1 Missense_Mutation p.A1006S 0.04 tolerated(0.23) benign(0.005) TCGA-BR-A4PD-01 7 88965208 88965208 G T ZNF804B Missense_Mutation p.G971V 0.04 tolerated(0.65) benign(0.037) TCGA-BR-A4PD-01 8 104080980 104080980 G T ATP6V1C1 3'UTR 0.24 TCGA-BR-A4PD-01 8 104898091 104898091 A G RIMS2 Missense_Mutation p.S422G 0.41 tolerated_low_confidence(0.64) benign(0.003) TCGA-BR-A4PD-01 8 106813645 106813645 T C ZFPM2 Silent p.T445T 0.27 TCGA-BR-A4PD-01 8 113988120 113988120 T G CSMD3 Silent p.R430R 0.27 TCGA-BR-A4PD-01 8 124232290 124232290 C A C8orf76 3'UTR 0.25 TCGA-BR-A4PD-01 8 130762281 130762281 A T GSDMC Missense_Mutation p.F390I 0.18 tolerated(0.64) benign(0.013) TCGA-BR-A4PD-01 8 139164785 139164785 T G FAM135B Missense_Mutation p.S645R 0.33 tolerated(0.13) benign(0.303) TCGA-BR-A4PD-01 8 2820840 2820840 T G CSMD1 Missense_Mutation p.S3120R 0.31 probably_damaging(0.994) TCGA-BR-A4PD-01 8 30210598 30210598 C T TUBBP1 RNA 0.32 TCGA-BR-A4PD-01 8 40532429 40532429 T C ZMAT4 Missense_Mutation p.K124R 0.32 tolerated(0.24) benign(0.036) TCGA-BR-A4PD-01 8 55533710 55533710 T C RP1 Missense_Mutation p.S62P 0.21 deleterious(0) possibly_damaging(0.794) TCGA-BR-A4PD-01 8 91637819 91637819 T A TMEM64 3'UTR 0.30 TCGA-BR-A4PD-01 8 92401568 92401568 G A SLC26A7 Missense_Mutation p.E560K 0.27 tolerated(0.21) possibly_damaging(0.542) TCGA-BR-A4PD-01 9 100367774 100367774 G C TSTD2 Silent p.L368L 0.29 TCGA-BR-A4PD-01 9 106889688 106889688 C T SMC2 Missense_Mutation p.S906F 0.10 tolerated(0.59) benign(0.063) TCGA-BR-A4PD-01 9 119187831 119187831 T G ASTN2 3'UTR 0.23 TCGA-BR-A4PD-01 9 139835816 139835816 G C FBXW5 Missense_Mutation p.F448L 0.13 deleterious(0.03) benign(0.175) TCGA-BR-A4PD-01 9 77703615 77703615 A T OSTF1 Nonsense_Mutation p.K3* 0.14 TCGA-BR-A4PD-01 9 90503233 90503233 G A SPATA31E1 Silent p.R1277R 0.11 TCGA-BR-A4PD-01 X 130678330 130678330 C - OR13H1 Frame_Shift_Del p.R96Dfs*41 0.08 TCGA-BR-A4PD-01 X 13803813 13803813 A G GPM6B Missense_Mutation p.L99P 0.10 deleterious(0) probably_damaging(0.993) TCGA-BR-A4PD-01 X 151821216 151821216 A G GABRQ Silent p.S457S 0.11 TCGA-BR-A4PD-01 X 151900086 151900086 A T MAGEA12 Missense_Mutation p.F239I 0.31 deleterious(0) benign(0.127) TCGA-BR-A4PD-01 X 153881527 153881527 A T CTAG2 Missense_Mutation p.L88H 0.06 deleterious_low_confidence(0) probably_damaging(0.943) TCGA-BR-A4PD-01 X 1712436 1712436 C T AKAP17A Silent p.I27I 0.44 TCGA-BR-A4PD-01 X 38664471 38664471 A G MID1IP1 Missense_Mutation p.Y91C 0.61 deleterious(0) probably_damaging(0.997) TCGA-BR-A4PD-01 X 53622292 53622292 C A HUWE1 Missense_Mutation p.V1079F 0.09 possibly_damaging(0.897) TCGA-BR-A4PD-01 X 54949090 54949090 T G TRO Missense_Mutation p.V42G 0.06 deleterious_low_confidence(0) unknown(0) TCGA-BR-A4PD-01 X 67273537 67273537 T G OPHN1 Missense_Mutation p.E758D 0.13 tolerated_low_confidence(0.17) benign(0.003) TCGA-BR-A4PD-01 X 70627984 70627984 A C TAF1 Missense_Mutation p.N1476T 0.47 deleterious(0) probably_damaging(0.999) TCGA-BR-A4PD-01 X 70824126 70824126 A C ACRC Missense_Mutation p.E333D 0.06 unknown(0) TCGA-BR-A4PD-01 X 83128921 83128921 A C CYLC1 Missense_Mutation p.K402T 0.18 deleterious(0.02) unknown(0) TCGA-BR-A4PD-01 X 86880695 86880695 T G KLHL4 Missense_Mutation p.L408R 0.11 deleterious(0) probably_damaging(1) TCGA-BR-A4PD-01 X 89177518 89177518 A G TGIF2LX Missense_Mutation p.K145R 0.18 tolerated(0.23) benign(0.086) TCGA-BR-A4PE-01 10 102247821 102247821 C T SEC31B Missense_Mutation p.R1108H 0.20 deleterious(0) probably_damaging(0.937) TCGA-BR-A4PE-01 10 103990823 103990823 C T PITX3 Silent p.K119K 0.14 TCGA-BR-A4PE-01 10 106019439 106019439 C T GSTO1 Silent p.I83I 0.29 TCGA-BR-A4PE-01 10 107007078 107007078 G C SORCS3 Missense_Mutation p.A1032P 0.12 tolerated(0.17) possibly_damaging(0.866) TCGA-BR-A4PE-01 10 115602170 115602170 A C DCLRE1A Missense_Mutation p.V866G 0.20 deleterious(0) possibly_damaging(0.832) TCGA-BR-A4PE-01 10 121586986 121586986 G A INPP5F Silent p.A1031A 0.25 TCGA-BR-A4PE-01 10 125769672 125769672 G A CHST15 Missense_Mutation p.T560M 0.11 deleterious(0.03) benign(0.016) TCGA-BR-A4PE-01 10 126692055 126692055 C T CTBP2 Missense_Mutation p.R562H 0.19 deleterious(0.01) possibly_damaging(0.707) TCGA-BR-A4PE-01 10 128192684 128192684 C T C10orf90 Nonsense_Mutation p.W362* 0.17 TCGA-BR-A4PE-01 10 26790049 26790049 G A APBB1IP Intron 0.23 TCGA-BR-A4PE-01 10 50374978 50374978 C T C10orf128 Missense_Mutation p.M58I 0.17 deleterious(0.03) possibly_damaging(0.888) TCGA-BR-A4PE-01 10 50690777 50690777 C T ERCC6 Missense_Mutation p.V709I 0.44 tolerated(0.11) benign(0.235) TCGA-BR-A4PE-01 10 55582575 55582576 CT - PCDH15 Frame_Shift_Del p.E1639Gfs*6 0.19 TCGA-BR-A4PE-01 10 68687592 68687592 C A LRRTM3 Missense_Mutation p.D306E 0.12 deleterious(0.02) benign(0.216) TCGA-BR-A4PE-01 10 73437442 73437442 C T CDH23 Missense_Mutation p.R174W 0.38 deleterious(0.04) probably_damaging(0.924) TCGA-BR-A4PE-01 10 7683969 7683969 G T ITIH5 Missense_Mutation p.L74M 0.13 tolerated(0.07) possibly_damaging(0.603) TCGA-BR-A4PE-01 11 1017061 1017061 T - MUC6 Frame_Shift_Del p.T1914Lfs*71 0.22 TCGA-BR-A4PE-01 11 119044606 119044606 G A NLRX1 Silent p.V216V 0.28 TCGA-BR-A4PE-01 11 121023647 121023647 G A TECTA Missense_Mutation p.R1388H 0.21 tolerated(0.12) possibly_damaging(0.885) TCGA-BR-A4PE-01 11 26720006 26720006 G A SLC5A12 Missense_Mutation p.H300Y 0.21 tolerated(1) benign(0.003) TCGA-BR-A4PE-01 11 27371796 27371796 T G CCDC34 Intron 0.32 TCGA-BR-A4PE-01 11 27393907 27393907 A T LGR4 Missense_Mutation p.F473Y 0.13 tolerated(0.5) benign(0.241) TCGA-BR-A4PE-01 11 51412296 51412296 A C OR4A5 Missense_Mutation p.L34V 0.19 tolerated_low_confidence(0.16) benign(0.001) TCGA-BR-A4PE-01 11 55587542 55587542 T G OR5D18 Missense_Mutation p.V146G 0.13 deleterious(0) probably_damaging(0.939) TCGA-BR-A4PE-01 11 78381536 78381536 G A TENM4 Missense_Mutation p.R1952C 0.46 tolerated(0.08) possibly_damaging(0.899) TCGA-BR-A4PE-01 11 92088390 92088390 C T FAT3 Missense_Mutation p.L1038F 0.19 probably_damaging(0.999) TCGA-BR-A4PE-01 12 100200244 100200244 G A ANKS1B Missense_Mutation p.R203C 0.33 deleterious(0) benign(0.403) TCGA-BR-A4PE-01 12 10124150 10124150 T G CLEC12A Intron 0.29 TCGA-BR-A4PE-01 12 109278977 109278977 G A DAO Splice_Site p.X65_splice 0.20 TCGA-BR-A4PE-01 12 113706632 113706632 G A TPCN1 Missense_Mutation p.R277H 0.51 deleterious(0) probably_damaging(0.969) TCGA-BR-A4PE-01 12 11546745 11546745 A C PRB2 Silent p.P89P 0.11 TCGA-BR-A4PE-01 12 13366432 13366432 C T EMP1 Missense_Mutation p.T33M 0.21 tolerated(0.18) benign(0.035) TCGA-BR-A4PE-01 12 14613718 14613718 C A ATF7IP Missense_Mutation p.F816L 0.35 tolerated_low_confidence(0.06) unknown(0) TCGA-BR-A4PE-01 12 21807507 21807507 A T LDHB Silent p.G33G 0.20 TCGA-BR-A4PE-01 12 25702400 25702400 A C IFLTD1 Missense_Mutation p.L57W 0.27 tolerated(0.08) benign(0.202) TCGA-BR-A4PE-01 12 41386999 41386999 G A CNTN1 Missense_Mutation p.V681M 0.22 deleterious(0) probably_damaging(0.979) TCGA-BR-A4PE-01 12 52967407 52967407 C A KRT74 Missense_Mutation p.S52I 0.45 deleterious(0.04) benign(0.439) TCGA-BR-A4PE-01 12 54447817 54447817 C T HOXC4 Silent p.Y37Y 0.28 TCGA-BR-A4PE-01 12 54932722 54932722 A C NCKAP1L Silent p.R1080R 0.21 TCGA-BR-A4PE-01 12 72956687 72956687 A T TRHDE Missense_Mutation p.T592S 0.37 deleterious(0.03) possibly_damaging(0.867) TCGA-BR-A4PE-01 13 101759837 101759837 C T NALCN Splice_Site p.X860_splice 0.15 TCGA-BR-A4PE-01 13 110804813 110804813 G A COL4A1 Missense_Mutation p.A1599V 0.15 unknown(0) TCGA-BR-A4PE-01 13 36428641 36428642 - CC DCLK1 Frame_Shift_Ins p.Q344Gfs*44 0.20 TCGA-BR-A4PE-01 13 49795146 49795146 G A MLNR Missense_Mutation p.A225T 0.71 tolerated(0.3) benign(0.207) TCGA-BR-A4PE-01 13 96237002 96237002 G A DZIP1 Missense_Mutation p.P838S 0.19 tolerated(0.1) benign(0.169) TCGA-BR-A4PE-01 14 103371673 103371673 G - TRAF3 Frame_Shift_Del p.W420* 0.19 TCGA-BR-A4PE-01 14 21860369 21860369 C T CHD8 Intron 0.21 TCGA-BR-A4PE-01 14 22180994 22180994 G A TRAV2 Missense_Mutation p.R89Q 0.19 deleterious(0.01) probably_damaging(0.979) TCGA-BR-A4PE-01 14 50628209 50628209 C T SOS2 Missense_Mutation p.R396H 0.10 deleterious(0) possibly_damaging(0.744) TCGA-BR-A4PE-01 14 63447746 63447746 G T KCNH5 Silent p.I262I 0.20 TCGA-BR-A4PE-01 14 65197573 65197573 G A PLEKHG3 Missense_Mutation p.R152Q 0.21 deleterious(0.01) possibly_damaging(0.826) TCGA-BR-A4PE-01 14 72055143 72055143 T A SIPA1L1 Missense_Mutation p.V185E 0.25 tolerated(0.25) benign(0.109) TCGA-BR-A4PE-01 14 86088325 86088325 G T FLRT2 Missense_Mutation p.R156L 0.23 tolerated(0.11) benign(0.076) TCGA-BR-A4PE-01 15 25304862 25304862 G A SNORD116-3 3'Flank 0.35 TCGA-BR-A4PE-01 15 25959366 25959366 T G ATP10A Missense_Mutation p.K600T 0.10 tolerated(0.07) benign(0.3) TCGA-BR-A4PE-01 15 28473509 28473509 T C HERC2 Silent p.S1773S 0.15 TCGA-BR-A4PE-01 15 33855184 33855184 T G RYR3 Silent p.T373T 0.21 TCGA-BR-A4PE-01 15 33925173 33925173 A G RYR3 Missense_Mutation p.K964R 0.21 benign(0.34) TCGA-BR-A4PE-01 15 81625267 81625267 G T TMC3 Silent p.V932V 0.30 TCGA-BR-A4PE-01 16 1500502 1500502 G A CLCN7 Missense_Mutation p.A538V 0.25 tolerated(0.26) benign(0.01) TCGA-BR-A4PE-01 16 1961987 1961987 G A HS3ST6 Silent p.H180H 0.27 TCGA-BR-A4PE-01 16 30506112 30506112 G A ITGAL Missense_Mutation p.A482T 0.16 deleterious(0.01) possibly_damaging(0.795) TCGA-BR-A4PE-01 16 3076271 3076271 G A THOC6 Missense_Mutation p.R115H 0.44 deleterious(0.01) benign(0.001) TCGA-BR-A4PE-01 16 50667336 50667336 G A NKD1 Missense_Mutation p.G353S 0.15 tolerated(0.19) probably_damaging(0.981) TCGA-BR-A4PE-01 16 5112558 5112558 G A C16orf89 Missense_Mutation p.R76W 0.14 tolerated(0.09) benign(0.394) TCGA-BR-A4PE-01 16 57756726 57756726 C T CCDC135 Missense_Mutation p.R461C 0.23 deleterious(0.01) benign(0.249) TCGA-BR-A4PE-01 16 62055298 62055298 G T CDH8 Silent p.R4R 0.31 TCGA-BR-A4PE-01 16 66974528 66974528 G A CES2 Missense_Mutation p.G313E 0.21 tolerated(0.11) probably_damaging(0.924) TCGA-BR-A4PE-01 16 67860070 67860070 G A TSNAXIP1 Missense_Mutation p.G333D 0.15 deleterious(0) probably_damaging(1) TCGA-BR-A4PE-01 16 69760431 69760431 G A NQO1 5'UTR 0.20 TCGA-BR-A4PE-01 16 83781732 83781732 C A CDH13 Missense_Mutation p.P567T 0.20 deleterious(0.02) probably_damaging(0.957) TCGA-BR-A4PE-01 16 904564 904564 C A LMF1 Missense_Mutation p.D558Y 0.21 deleterious(0) benign(0.396) TCGA-BR-A4PE-01 16 9210632 9210632 G T C16orf72 Missense_Mutation p.D231Y 0.26 deleterious(0) probably_damaging(0.939) TCGA-BR-A4PE-01 17 35545334 35545334 G A ACACA Silent p.N1553N 0.12 TCGA-BR-A4PE-01 17 37934153 37934153 A T IKZF3 Intron 0.79 TCGA-BR-A4PE-01 17 40093094 40093094 C T TTC25 RNA 0.21 TCGA-BR-A4PE-01 17 4540419 4540419 C T ALOX15 Missense_Mutation p.M314I 0.40 tolerated(0.9) benign(0.037) TCGA-BR-A4PE-01 17 66873741 66873741 T G ABCA8 Missense_Mutation p.N1333T 0.20 tolerated(0.18) benign(0.145) TCGA-BR-A4PE-01 17 67257396 67257396 G A ABCA5 Missense_Mutation p.A1145V 0.31 tolerated(0.23) possibly_damaging(0.858) TCGA-BR-A4PE-01 17 7578524 7578524 G C TP53 Missense_Mutation p.Q136E 0.67 deleterious(0) probably_damaging(0.997) TCGA-BR-A4PE-01 18 31323566 31323566 C A ASXL3 Missense_Mutation p.H1252N 0.33 benign(0.445) TCGA-BR-A4PE-01 18 70451126 70451126 A G NETO1 Silent p.L219L 0.14 TCGA-BR-A4PE-01 18 74607115 74607115 G A ZNF236 Missense_Mutation p.A520T 0.40 deleterious(0.01) probably_damaging(0.945) TCGA-BR-A4PE-01 18 9513171 9513171 G A RALBP1 Missense_Mutation p.R43H 0.15 tolerated(0.13) benign(0.137) TCGA-BR-A4PE-01 18 9517284 9517284 G A RALBP1 Missense_Mutation p.G229D 0.28 deleterious(0.02) probably_damaging(1) TCGA-BR-A4PE-01 19 10081312 10081312 G T COL5A3 Missense_Mutation p.P1308T 0.45 unknown(0) TCGA-BR-A4PE-01 19 13919781 13919781 C T ZSWIM4 Missense_Mutation p.R282C 0.27 tolerated(0.14) possibly_damaging(0.835) TCGA-BR-A4PE-01 19 1754826 1754826 C A ONECUT3 Missense_Mutation p.Q389K 0.42 deleterious(0.02) benign(0.146) TCGA-BR-A4PE-01 19 18965495 18965495 G A UPF1 Silent p.V414V 0.18 TCGA-BR-A4PE-01 19 19359609 19359609 A T NCAN Missense_Mutation p.E1246D 0.15 tolerated(0.23) benign(0.009) TCGA-BR-A4PE-01 19 19391068 19391068 C T SUGP1 Missense_Mutation p.G426R 0.10 deleterious(0.03) probably_damaging(0.996) TCGA-BR-A4PE-01 19 23328967 23328967 G A ZNF730 Missense_Mutation p.G374D 0.22 deleterious(0.04) benign(0.006) TCGA-BR-A4PE-01 19 31769898 31769898 C T TSHZ3 Silent p.G267G 0.21 TCGA-BR-A4PE-01 19 40929446 40929446 C T SERTAD1 Missense_Mutation p.S3N 0.26 tolerated(0.08) probably_damaging(0.968) TCGA-BR-A4PE-01 19 46997623 46997623 T C PNMAL2 Missense_Mutation p.D367G 0.24 tolerated(0.17) probably_damaging(0.996) TCGA-BR-A4PE-01 19 51128454 51128454 G A SYT3 Missense_Mutation p.R558C 0.27 deleterious(0) probably_damaging(0.994) TCGA-BR-A4PE-01 19 51192573 51192573 G A SHANK1 Intron 0.19 TCGA-BR-A4PE-01 19 53912160 53912160 C T ZNF765 Missense_Mutation p.S451L 0.23 deleterious(0.03) benign(0.049) TCGA-BR-A4PE-01 19 54875910 54875910 G A LAIR1 Missense_Mutation p.T21M 0.40 tolerated(0.13) possibly_damaging(0.535) TCGA-BR-A4PE-01 19 55045223 55045223 G A KIR3DX1 Missense_Mutation p.V115I 0.17 tolerated(0.3) possibly_damaging(0.85) TCGA-BR-A4PE-01 19 55446019 55446019 C T NLRP7 Missense_Mutation p.G770D 0.29 tolerated(0.07) benign(0.065) TCGA-BR-A4PE-01 19 6586225 6586225 C T CD70 Missense_Mutation p.V130M 0.25 deleterious(0) probably_damaging(0.963) TCGA-BR-A4PE-01 19 9064483 9064484 - A MUC16 Frame_Shift_Ins p.Q7655Sfs*23 0.16 TCGA-BR-A4PE-01 19 9087510 9087510 A C MUC16 Silent p.T1435T 0.20 TCGA-BR-A4PE-01 1 107599750 107599750 G T PRMT6 Missense_Mutation p.G138V 0.29 deleterious(0) probably_damaging(0.968) TCGA-BR-A4PE-01 1 111957788 111957788 G A OVGP1 Silent p.T445T 0.17 TCGA-BR-A4PE-01 1 117529590 117529590 G T PTGFRN 3'UTR 0.31 TCGA-BR-A4PE-01 1 13695903 13695903 G T PRAMEF19 Silent p.L354L 0.16 TCGA-BR-A4PE-01 1 152057468 152057468 C T TCHHL1 Missense_Mutation p.R897K 0.16 tolerated(0.35) benign(0.017) TCGA-BR-A4PE-01 1 152279060 152279060 C G FLG Missense_Mutation p.E2768Q 0.06 benign(0.341) TCGA-BR-A4PE-01 1 152323407 152323407 C A FLG2 Missense_Mutation p.Q2285H 0.18 benign(0.003) TCGA-BR-A4PE-01 1 152733756 152733756 C A KPRP Silent p.G564G 0.54 TCGA-BR-A4PE-01 1 156106821 156106821 T G LMNA Splice_Site p.X496_splice 0.10 TCGA-BR-A4PE-01 1 159166667 159166667 G T CADM3 Intron 0.12 TCGA-BR-A4PE-01 1 159284097 159284097 A G OR10J3 Missense_Mutation p.V118A 0.18 tolerated(0.86) benign(0.003) TCGA-BR-A4PE-01 1 16374433 16374433 C T CLCNKB Missense_Mutation p.A131V 0.49 deleterious(0.01) benign(0.105) TCGA-BR-A4PE-01 1 166985522 166985522 G A MAEL Splice_Site p.X303_splice 0.19 TCGA-BR-A4PE-01 1 172579318 172579318 G A SUCO Silent p.P1228P 0.20 TCGA-BR-A4PE-01 1 17690151 17690151 C T PADI4 Silent p.N631N 0.22 TCGA-BR-A4PE-01 1 176915143 176915143 G T ASTN1 Missense_Mutation p.T723N 0.48 deleterious_low_confidence(0) possibly_damaging(0.826) TCGA-BR-A4PE-01 1 186101509 186101509 T A HMCN1 Missense_Mutation p.V4427E 0.27 possibly_damaging(0.685) TCGA-BR-A4PE-01 1 205211050 205211050 G A TMCC2 Missense_Mutation p.A209T 0.48 deleterious(0.01) benign(0.013) TCGA-BR-A4PE-01 1 231401890 231401890 T G GNPAT Silent p.P301P 0.14 TCGA-BR-A4PE-01 1 247752051 247752051 C A OR2G2 Nonsense_Mutation p.C130* 0.16 TCGA-BR-A4PE-01 1 27100330 27100342 ACCCCTTCTGGCA - ARID1A Frame_Shift_Del p.T1348Afs*129 0.22 TCGA-BR-A4PE-01 1 32680443 32680443 C - DCDC2B Frame_Shift_Del p.P254Qfs*33 0.19 TCGA-BR-A4PE-01 1 34329993 34329993 C A HMGB4 Missense_Mutation p.D67E 0.23 deleterious(0.02) probably_damaging(1) TCGA-BR-A4PE-01 1 36181267 36181267 C G C1orf216 Missense_Mutation p.R219T 0.31 deleterious_low_confidence(0.05) benign(0.372) TCGA-BR-A4PE-01 1 3638768 3638768 G T TP73 Nonsense_Mutation p.E205* 0.31 TCGA-BR-A4PE-01 1 38288031 38288031 G A MTF1 Missense_Mutation p.A510V 0.19 deleterious(0.05) benign(0.427) TCGA-BR-A4PE-01 1 53724104 53724104 C T LRP8 Missense_Mutation p.G699D 0.28 deleterious(0.01) probably_damaging(1) TCGA-BR-A4PE-01 20 31023525 31023525 G A ASXL1 Missense_Mutation p.D1004N 0.24 deleterious(0) probably_damaging(0.998) TCGA-BR-A4PE-01 20 3127667 3127667 G A FASTKD5 Silent p.L684L 0.17 TCGA-BR-A4PE-01 20 3236670 3236670 C A C20orf194 Silent p.L1081L 0.13 TCGA-BR-A4PE-01 20 33862271 33862271 C T MMP24 Silent p.S599S 0.11 TCGA-BR-A4PE-01 20 37581072 37581072 C T FAM83D Missense_Mutation p.T586I 0.18 tolerated(0.17) benign(0.271) TCGA-BR-A4PE-01 20 50407967 50407967 G A SALL4 Missense_Mutation p.A352V 0.18 deleterious(0.05) benign(0.011) TCGA-BR-A4PE-01 20 54824543 54824543 G A MC3R Missense_Mutation p.R215Q 0.09 tolerated(0.09) probably_damaging(0.999) TCGA-BR-A4PE-01 20 57089821 57089821 G A APCDD1L 5'UTR 0.50 TCGA-BR-A4PE-01 20 57766724 57766724 G A ZNF831 Missense_Mutation p.G217E 0.13 deleterious(0.01) probably_damaging(0.922) TCGA-BR-A4PE-01 20 61869339 61869339 C A BIRC7 Missense_Mutation p.A145D 0.10 deleterious(0) probably_damaging(0.975) TCGA-BR-A4PE-01 20 61919114 61919114 C T ARFGAP1 Silent p.A378A 0.27 TCGA-BR-A4PE-01 21 47685984 47685984 G A MCM3AP Silent p.V962V 0.34 TCGA-BR-A4PE-01 22 20785156 20785156 G A SCARF2 Silent p.A298A 0.29 TCGA-BR-A4PE-01 22 36684873 36684873 C T MYH9 Missense_Mutation p.R1557Q 0.24 probably_damaging(0.988) TCGA-BR-A4PE-01 22 37695268 37695268 G A CYTH4 Missense_Mutation p.D119N 0.23 tolerated(0.29) possibly_damaging(0.807) TCGA-BR-A4PE-01 22 38935401 38935402 - A DMC1 Frame_Shift_Ins p.R171* 0.14 TCGA-BR-A4PE-01 22 46125340 46125340 C T ATXN10 Missense_Mutation p.T255M 0.24 tolerated(0.14) benign(0.004) TCGA-BR-A4PE-01 2 108618467 108618467 T C SLC5A7 Missense_Mutation p.Y238H 0.19 tolerated(0.32) benign(0.202) TCGA-BR-A4PE-01 2 125530594 125530594 G T CNTNAP5 Missense_Mutation p.G917W 0.10 deleterious(0) probably_damaging(1) TCGA-BR-A4PE-01 2 136396502 136396502 C T R3HDM1 Silent p.S343S 0.35 TCGA-BR-A4PE-01 2 137814207 137814207 C T THSD7B Silent p.Y119Y 0.14 TCGA-BR-A4PE-01 2 141004684 141004684 T C LRP1B Missense_Mutation p.K4432R 0.19 benign(0.292) TCGA-BR-A4PE-01 2 166021016 166021016 C A SCN3A Missense_Mutation p.G163V 0.17 tolerated(0.17) benign(0.12) TCGA-BR-A4PE-01 2 166229777 166229777 G T SCN2A Nonsense_Mutation p.E1298* 0.29 TCGA-BR-A4PE-01 2 168101416 168101416 G C XIRP2 Missense_Mutation p.E1172Q 0.21 probably_damaging(0.999) TCGA-BR-A4PE-01 2 176965305 176965305 G A HOXD12 Silent p.T210T 0.17 TCGA-BR-A4PE-01 2 179445168 179445168 G C TTN Missense_Mutation p.T22313S 0.12 TCGA-BR-A4PE-01 2 179499302 179499302 C T TTN Missense_Mutation p.R14069Q 0.15 TCGA-BR-A4PE-01 2 179616598 179616598 A C TTN Intron 0.19 TCGA-BR-A4PE-01 2 203630166 203630166 T C FAM117B Intron 0.18 TCGA-BR-A4PE-01 2 218712303 218712303 A C TNS1 Silent p.T854T 0.17 TCGA-BR-A4PE-01 2 219501217 219501217 T G PLCD4 Missense_Mutation p.S736A 0.15 deleterious(0.01) probably_damaging(0.991) TCGA-BR-A4PE-01 2 219892515 219892515 G A CCDC108 Nonsense_Mutation p.R690* 0.39 TCGA-BR-A4PE-01 2 220136170 220136170 G A TUBA4B RNA 0.35 TCGA-BR-A4PE-01 2 220431630 220431630 C T OBSL1 Missense_Mutation p.V686I 0.16 deleterious(0.04) possibly_damaging(0.577) TCGA-BR-A4PE-01 2 227773563 227773563 C - RHBDD1 Frame_Shift_Del p.P228Qfs*41 0.23 TCGA-BR-A4PE-01 2 228846563 228846563 A G SPHKAP Missense_Mutation p.V1658A 0.27 deleterious(0.05) possibly_damaging(0.787) TCGA-BR-A4PE-01 2 232326259 232326264 TCATCG - NCL In_Frame_Del p.D200_D201del 0.24 TCGA-BR-A4PE-01 2 233407734 233407734 C T CHRNG Silent p.I249I 0.16 TCGA-BR-A4PE-01 2 234652296 234652296 G A UGT1A10 Intron 0.18 TCGA-BR-A4PE-01 2 234750289 234750289 C T HJURP Silent p.V379V 0.17 TCGA-BR-A4PE-01 2 240921557 240921557 C T NDUFA10 Intron 0.20 TCGA-BR-A4PE-01 2 29296154 29296154 A T C2orf71 Missense_Mutation p.L325Q 0.22 deleterious(0) probably_damaging(0.999) TCGA-BR-A4PE-01 2 45235916 45235916 G A SIX2 Missense_Mutation p.R112C 0.17 deleterious(0) probably_damaging(1) TCGA-BR-A4PE-01 2 54483006 54483006 C T TSPYL6 Missense_Mutation p.A95T 0.09 tolerated(0.94) benign(0.003) TCGA-BR-A4PE-01 2 85981597 85981597 G A ATOH8 Silent p.E95E 0.18 TCGA-BR-A4PE-01 2 85981598 85981598 C A ATOH8 Missense_Mutation p.R96S 0.19 tolerated_low_confidence(0.22) benign(0.004) TCGA-BR-A4PE-01 3 108746704 108746704 G T MORC1 Missense_Mutation p.P533Q 0.15 deleterious(0) probably_damaging(1) TCGA-BR-A4PE-01 3 113955043 113955043 C G ZNF80 3'UTR 0.09 TCGA-BR-A4PE-01 3 118865449 118865449 C T C3orf30 Missense_Mutation p.T138M 0.19 tolerated(0.19) possibly_damaging(0.796) TCGA-BR-A4PE-01 3 130733117 130733117 G A ASTE1 Silent p.F608F 0.31 TCGA-BR-A4PE-01 3 134670497 134670497 A C EPHB1 Missense_Mutation p.K136N 0.15 deleterious(0) probably_damaging(1) TCGA-BR-A4PE-01 3 134851755 134851755 G A EPHB1 Silent p.T387T 0.52 TCGA-BR-A4PE-01 3 141162920 141162920 A G ZBTB38 Missense_Mutation p.K564E 0.22 deleterious(0) probably_damaging(0.996) TCGA-BR-A4PE-01 3 147128475 147128475 G A ZIC1 Silent p.P192P 0.13 TCGA-BR-A4PE-01 3 160285778 160285778 C A KPNA4 5'Flank 0.09 TCGA-BR-A4PE-01 3 167039951 167039951 C A ZBBX Missense_Mutation p.D313Y 0.26 deleterious(0) probably_damaging(0.957) TCGA-BR-A4PE-01 3 195595338 195595338 C T TNK2 Missense_Mutation p.A674T 0.22 deleterious(0.05) possibly_damaging(0.746) TCGA-BR-A4PE-01 3 36524582 36524582 C A STAC Missense_Mutation p.L163M 0.14 tolerated(0.19) probably_damaging(0.968) TCGA-BR-A4PE-01 3 47610710 47610710 G A CSPG5 Missense_Mutation p.R464W 0.54 deleterious(0.01) probably_damaging(1) TCGA-BR-A4PE-01 3 51897243 51897243 C T IQCF2 Nonsense_Mutation p.R118* 0.23 TCGA-BR-A4PE-01 3 63638415 63638415 G A SNTN Missense_Mutation p.D18N 0.29 tolerated(0.09) benign(0.005) TCGA-BR-A4PE-01 3 9780998 9780998 C T BRPF1 Silent p.Y305Y 0.35 TCGA-BR-A4PE-01 3 9796425 9796425 G C OGG1 Silent p.L201L 0.36 TCGA-BR-A4PE-01 4 2701991 2701991 G A FAM193A Silent p.Q1073Q 0.16 TCGA-BR-A4PE-01 4 69519913 69519913 G A UGT2B15 Silent p.I385I 0.16 TCGA-BR-A4PE-01 4 93225895 93225895 G A GRID2 Missense_Mutation p.G30R 0.24 deleterious(0) probably_damaging(1) TCGA-BR-A4PE-01 4 984120 984120 C T SLC26A1 Missense_Mutation p.V203M 0.19 deleterious(0.01) possibly_damaging(0.463) TCGA-BR-A4PE-01 5 108436218 108436218 C G FER Missense_Mutation p.H682Q 0.38 deleterious(0) probably_damaging(0.999) TCGA-BR-A4PE-01 5 11022914 11022914 T G CTNND2 Missense_Mutation p.K989T 0.35 deleterious(0) benign(0.27) TCGA-BR-A4PE-01 5 137727090 137727090 A C KDM3B Missense_Mutation p.D590A 0.47 tolerated_low_confidence(0.6) benign(0.115) TCGA-BR-A4PE-01 5 14492826 14492826 G A TRIO Missense_Mutation p.A2595T 0.19 benign(0.003) TCGA-BR-A4PE-01 5 31799291 31799291 G T PDZD2 5'UTR 0.28 TCGA-BR-A4PE-01 5 33576376 33576376 C T ADAMTS12 Missense_Mutation p.G1252E 0.19 tolerated(1) benign(0.004) TCGA-BR-A4PE-01 5 3599879 3599879 G A IRX1 Missense_Mutation p.D273N 0.27 tolerated(0.08) benign(0.1) TCGA-BR-A4PE-01 5 55238562 55238562 C T IL6ST Nonsense_Mutation p.W652* 0.25 TCGA-BR-A4PE-01 6 133070863 133070863 C T VNN2 Missense_Mutation p.E448K 0.12 tolerated(0.18) benign(0.001) TCGA-BR-A4PE-01 6 136597228 136597228 T G BCLAF1 Missense_Mutation p.K479Q 0.07 deleterious(0.02) possibly_damaging(0.607) TCGA-BR-A4PE-01 6 144086875 144086875 C T PHACTR2 Missense_Mutation p.T391M 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.839) TCGA-BR-A4PE-01 6 160328940 160328940 C T MAS1 Missense_Mutation p.T318M 0.24 tolerated_low_confidence(0.1) benign(0.24) TCGA-BR-A4PE-01 6 31600501 31600501 G A PRRC2A Missense_Mutation p.V1351M 0.13 unknown(0) TCGA-BR-A4PE-01 6 31692809 31692809 G A C6orf25 Silent p.A228A 0.47 TCGA-BR-A4PE-01 6 36710164 36710164 C T CPNE5 Missense_Mutation p.V555M 0.07 deleterious(0.03) benign(0.014) TCGA-BR-A4PE-01 6 39053858 39053858 C T GLP1R 3'UTR 0.16 TCGA-BR-A4PE-01 6 41029224 41029224 G T APOBEC2 Missense_Mutation p.A97S 0.21 tolerated(0.31) benign(0.015) TCGA-BR-A4PE-01 6 52550926 52550926 T C TMEM14A 3'UTR 0.15 TCGA-BR-A4PE-01 6 66094316 66094316 T C EYS Missense_Mutation p.N421S 0.20 deleterious(0.02) benign(0.025) TCGA-BR-A4PE-01 7 106509085 106509085 A G PIK3CG Missense_Mutation p.K360R 0.17 tolerated(0.32) benign(0.004) TCGA-BR-A4PE-01 7 107626654 107626654 C G LAMB1 Missense_Mutation p.R193P 0.11 deleterious(0) probably_damaging(1) TCGA-BR-A4PE-01 7 114302190 114302190 G T FOXP2 Missense_Mutation p.W598L 0.24 deleterious(0) probably_damaging(0.998) TCGA-BR-A4PE-01 7 119915591 119915591 A C KCND2 Missense_Mutation p.K302T 0.16 deleterious(0) probably_damaging(0.982) TCGA-BR-A4PE-01 7 137080436 137080436 T G DGKI Missense_Mutation p.T997P 0.15 deleterious(0) probably_damaging(0.999) TCGA-BR-A4PE-01 7 138602357 138602357 A G KIAA1549 Missense_Mutation p.L672S 0.24 tolerated(0.34) benign(0.025) TCGA-BR-A4PE-01 7 138943256 138943256 C T UBN2 Missense_Mutation p.S229F 0.12 deleterious(0) probably_damaging(0.996) TCGA-BR-A4PE-01 7 24892163 24892163 G C OSBPL3 Missense_Mutation p.P373R 0.23 tolerated(0.08) benign(0.346) TCGA-BR-A4PE-01 7 27147987 27147987 C T HOXA3 Silent p.S293S 0.17 TCGA-BR-A4PE-01 7 40134196 40134196 C G CDK13 Missense_Mutation p.H1386D 0.19 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-BR-A4PE-01 7 56045959 56045962 GTGA - GBAS Splice_Site p.X78_splice 0.18 TCGA-BR-A4PE-01 7 6731413 6731413 C T ZNF12 Missense_Mutation p.G387E 0.17 tolerated(0.06) probably_damaging(0.952) TCGA-BR-A4PE-01 7 82072713 82072713 G A CACNA2D1 Silent p.P21P 0.19 TCGA-BR-A4PE-01 7 88962859 88962859 G A ZNF804B Missense_Mutation p.R188Q 0.13 tolerated(0.09) benign(0.16) TCGA-BR-A4PE-01 8 10469206 10469206 T C RP1L1 Missense_Mutation p.Q801R 0.08 benign(0.007) TCGA-BR-A4PE-01 8 104898096 104898096 T A RIMS2 Silent p.S423S 0.16 TCGA-BR-A4PE-01 8 113569030 113569030 T A CSMD3 Missense_Mutation p.E1399V 0.12 deleterious(0.01) probably_damaging(0.997) TCGA-BR-A4PE-01 8 143763429 143763429 T G PSCA Missense_Mutation p.I75S 0.12 deleterious(0) possibly_damaging(0.891) TCGA-BR-A4PE-01 8 146033211 146033211 C T ZNF517 Missense_Mutation p.L304F 0.17 deleterious(0.03) probably_damaging(0.92) TCGA-BR-A4PE-01 8 22079330 22079330 C T PHYHIP Missense_Mutation p.G177S 0.12 tolerated(0.06) possibly_damaging(0.611) TCGA-BR-A4PE-01 8 24772194 24772194 C T NEFM Silent p.Y296Y 0.22 TCGA-BR-A4PE-01 8 24772258 24772258 G A NEFM Missense_Mutation p.A318T 0.11 tolerated(0.6) unknown(0) TCGA-BR-A4PE-01 8 3087591 3087591 A C CSMD1 Missense_Mutation p.F1439C 0.24 probably_damaging(0.944) TCGA-BR-A4PE-01 8 38122420 38122420 G A PPAPDC1B Intron 0.19 TCGA-BR-A4PE-01 8 54142060 54142060 A C OPRK1 Missense_Mutation p.F314V 0.18 tolerated(0.09) benign(0.198) TCGA-BR-A4PE-01 8 54142218 54142218 C A OPRK1 Missense_Mutation p.G261V 0.22 deleterious(0) probably_damaging(1) TCGA-BR-A4PE-01 8 68968087 68968087 A C PREX2 Missense_Mutation p.Q372H 0.32 deleterious(0) probably_damaging(0.986) TCGA-BR-A4PE-01 8 72754838 72754838 G A MSC 3'UTR 0.18 TCGA-BR-A4PE-01 8 72946496 72946496 A G TRPA1 Missense_Mutation p.L891P 0.25 deleterious(0) probably_damaging(0.989) TCGA-BR-A4PE-01 8 97797433 97797433 T G CPQ Missense_Mutation p.V103G 0.24 deleterious(0) probably_damaging(0.991) TCGA-BR-A4PE-01 9 116053021 116053021 G A PRPF4 Missense_Mutation p.G397E 0.19 deleterious(0) probably_damaging(1) TCGA-BR-A4PE-01 9 117099370 117099370 G A AKNA Silent p.R1428R 0.26 TCGA-BR-A4PE-01 9 121971060 121971060 C T BRINP1 Missense_Mutation p.R361H 0.26 tolerated(0.24) probably_damaging(0.964) TCGA-BR-A4PE-01 9 135866288 135866288 G A GFI1B Missense_Mutation p.G282R 0.11 deleterious(0) probably_damaging(0.981) TCGA-BR-A4PE-01 9 137693842 137693842 G C COL5A1 Missense_Mutation p.V999L 0.11 unknown(0) TCGA-BR-A4PE-01 9 138556088 138556088 C T LCN9 Silent p.F59F 0.16 TCGA-BR-A4PE-01 9 138707824 138707824 T C CAMSAP1 Missense_Mutation p.I1433M 0.14 tolerated(0.08) benign(0.017) TCGA-BR-A4PE-01 9 36147845 36147845 G A GLIPR2 Missense_Mutation p.V26I 0.14 tolerated(0.08) benign(0.056) TCGA-BR-A4PE-01 9 43626961 43626961 T C SPATA31A6 Missense_Mutation p.S576G 0.18 deleterious(0.01) possibly_damaging(0.466) TCGA-BR-A4PE-01 9 90301573 90301573 G T DAPK1 Missense_Mutation p.V778L 0.23 tolerated(0.08) benign(0.068) TCGA-BR-A4PE-01 9 95772662 95772662 G A FGD3 Silent p.A324A 0.33 TCGA-BR-A4PE-01 9 95997175 95997175 G A WNK2 Silent p.L387L 0.14 TCGA-BR-A4PE-01 X 107225140 107225140 G A TEX13B Missense_Mutation p.A73V 0.36 deleterious(0.01) possibly_damaging(0.833) TCGA-BR-A4PE-01 X 114141534 114141534 A G HTR2C Silent p.K311K 0.20 TCGA-BR-A4PE-01 X 141290910 141290910 C T MAGEC2 Silent p.E288E 0.24 TCGA-BR-A4PE-01 X 65393489 65393489 G A HEPH Silent p.P211P 0.25 TCGA-BR-A4PE-01 X 66905930 66905930 G A AR Missense_Mutation p.R616H 0.28 deleterious(0) probably_damaging(0.969) TCGA-BR-A4PE-01 X 75650027 75650027 C A MAGEE1 Silent p.P568P 0.38 TCGA-BR-A4PF-01 10 129899811 129899811 C T MKI67 Missense_Mutation p.G3139E 0.18 deleterious(0) benign(0.219) TCGA-BR-A4PF-01 10 48387918 48387918 G T RBP3 Missense_Mutation p.A987D 0.15 tolerated(0.09) possibly_damaging(0.665) TCGA-BR-A4PF-01 10 50530848 50530848 G A C10orf71 Silent p.P86P 0.17 TCGA-BR-A4PF-01 10 71657242 71657242 C A COL13A1 Missense_Mutation p.S223R 0.12 tolerated(0.5) possibly_damaging(0.852) TCGA-BR-A4PF-01 10 96093897 96093897 C T NOC3L 3'UTR 0.11 TCGA-BR-A4PF-01 11 103006490 103006490 G A DYNC2H1 Missense_Mutation p.R796Q 0.23 probably_damaging(0.943) TCGA-BR-A4PF-01 11 125891265 125891265 T G CDON Missense_Mutation p.K76T 0.14 tolerated(0.06) benign(0.012) TCGA-BR-A4PF-01 11 2435394 2435394 A G TRPM5 Missense_Mutation p.F596S 0.12 tolerated(0.06) possibly_damaging(0.798) TCGA-BR-A4PF-01 11 4622295 4622295 C G TRIM68 Missense_Mutation p.R290P 0.11 tolerated(0.17) possibly_damaging(0.818) TCGA-BR-A4PF-01 11 4661620 4661620 G T OR51D1 Silent p.L200L 0.14 TCGA-BR-A4PF-01 11 4673886 4673886 G C OR51E1 Missense_Mutation p.G44R 0.24 deleterious(0) probably_damaging(1) TCGA-BR-A4PF-01 11 4824825 4824825 G T OR52R1 Missense_Mutation p.F262L 0.12 tolerated(0.05) benign(0.12) TCGA-BR-A4PF-01 11 4935980 4935980 C T OR51G2 Missense_Mutation p.R305Q 0.21 deleterious(0.05) possibly_damaging(0.82) TCGA-BR-A4PF-01 11 55904869 55904869 A G OR8J3 Missense_Mutation p.V109A 0.23 tolerated(0.15) probably_damaging(0.997) TCGA-BR-A4PF-01 11 6650775 6650775 G C DCHS1 Missense_Mutation p.S1690C 0.17 deleterious(0.01) possibly_damaging(0.828) TCGA-BR-A4PF-01 11 66581429 66581429 G A C11orf80 Missense_Mutation p.D378N 0.18 tolerated(0.07) possibly_damaging(0.908) TCGA-BR-A4PF-01 11 69631105 69631105 C T FGF3 Missense_Mutation p.G103R 0.05 deleterious(0) probably_damaging(1) TCGA-BR-A4PF-01 11 94278513 94278513 C T FUT4 Missense_Mutation p.A405V 0.28 deleterious(0) probably_damaging(0.98) TCGA-BR-A4PF-01 11 94340624 94340624 C A PIWIL4 Missense_Mutation p.S553Y 0.24 deleterious(0) probably_damaging(0.961) TCGA-BR-A4PF-01 12 120535069 120535069 G A RAB35 Nonsense_Mutation p.R196* 0.25 TCGA-BR-A4PF-01 12 29474774 29474774 G C FAR2 Missense_Mutation p.E392Q 0.13 tolerated(0.12) probably_damaging(0.932) TCGA-BR-A4PF-01 12 40760826 40760826 T G LRRK2 Missense_Mutation p.M2470R 0.23 deleterious(0) benign(0.165) TCGA-BR-A4PF-01 12 41337868 41337868 G A CNTN1 Missense_Mutation p.A527T 0.26 tolerated(0.43) benign(0.314) TCGA-BR-A4PF-01 12 56647085 56647085 C T ANKRD52 Missense_Mutation p.A363T 0.84 deleterious(0) probably_damaging(0.997) TCGA-BR-A4PF-01 12 75728626 75728626 G A GLIPR1L1 Missense_Mutation p.A40T 0.13 tolerated(0.45) benign(0.021) TCGA-BR-A4PF-01 13 114514841 114514841 C T TMEM255B Missense_Mutation p.P316S 0.28 tolerated(0.97) possibly_damaging(0.635) TCGA-BR-A4PF-01 13 28608254 28608254 A G FLT3 Missense_Mutation p.L601P 0.11 tolerated(0.14) benign(0.161) TCGA-BR-A4PF-01 13 98634835 98634835 G A IPO5 Missense_Mutation p.E75K 0.31 deleterious(0.04) benign(0.17) TCGA-BR-A4PF-01 14 106091065 106091065 G A IGHG4 Silent p.S244S 0.15 TCGA-BR-A4PF-01 14 23828604 23828604 C T EFS Missense_Mutation p.M361I 0.25 tolerated(0.16) benign(0.001) TCGA-BR-A4PF-01 14 45578844 45578844 A T PRPF39 Missense_Mutation p.K346I 0.24 deleterious(0) probably_damaging(0.975) TCGA-BR-A4PF-01 15 31334409 31334409 T C TRPM1 Missense_Mutation p.K628R 0.25 tolerated(0.08) benign(0.157) TCGA-BR-A4PF-01 15 48056166 48056166 T C SEMA6D Silent p.D289D 0.13 TCGA-BR-A4PF-01 15 49255112 49255112 C T SHC4 Missense_Mutation p.R34Q 0.20 deleterious(0) probably_damaging(0.997) TCGA-BR-A4PF-01 15 74005310 74005310 G A CD276 3'UTR 0.19 TCGA-BR-A4PF-01 15 76430152 76430152 G A C15orf27 Missense_Mutation p.R48Q 0.26 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-BR-A4PF-01 16 50667166 50667166 G A NKD1 Missense_Mutation p.R296H 0.24 tolerated(0.06) probably_damaging(0.96) TCGA-BR-A4PF-01 17 1494653 1494653 T C SLC43A2 Missense_Mutation p.S281G 0.28 tolerated(0.39) benign(0) TCGA-BR-A4PF-01 17 25628925 25628925 G C WSB1 Missense_Mutation p.W51S 0.21 deleterious(0) probably_damaging(0.994) TCGA-BR-A4PF-01 17 4535309 4535309 G A ALOX15 Missense_Mutation p.R562W 0.19 deleterious(0.02) benign(0.252) TCGA-BR-A4PF-01 17 74075792 74075792 C T ZACN Nonsense_Mutation p.R78* 0.20 TCGA-BR-A4PF-01 17 7579442 7579442 G - TP53 Frame_Shift_Del p.P82Rfs*41 0.31 TCGA-BR-A4PF-01 18 66504246 66504246 G A CCDC102B Silent p.K82K 0.12 TCGA-BR-A4PF-01 18 70417353 70417353 G A NETO1 Silent p.I495I 0.10 TCGA-BR-A4PF-01 19 15582872 15582872 G A PGLYRP2 Missense_Mutation p.A391V 0.35 tolerated(0.07) benign(0.177) TCGA-BR-A4PF-01 19 2515092 2515092 G T GNG7 Missense_Mutation p.N45K 0.35 tolerated(0.84) benign(0.023) TCGA-BR-A4PF-01 19 40829971 40829971 G A C19orf47 Missense_Mutation p.T239M 0.23 deleterious(0.05) benign(0.176) TCGA-BR-A4PF-01 19 41596049 41596049 A T CYP2A13 Missense_Mutation p.E147D 0.34 tolerated(0.1) benign(0.002) TCGA-BR-A4PF-01 19 47858523 47858523 G A DHX34 Silent p.S311S 0.55 TCGA-BR-A4PF-01 19 58928789 58928789 G T ZNF584 Nonsense_Mutation p.E302* 0.38 TCGA-BR-A4PF-01 19 58929002 58929002 C A ZNF584 Missense_Mutation p.Q373K 0.30 deleterious(0.02) probably_damaging(0.983) TCGA-BR-A4PF-01 1 149783796 149783796 T C HIST2H2BF Missense_Mutation p.K28R 0.18 tolerated_low_confidence(0.06) unknown(0) TCGA-BR-A4PF-01 1 151748570 151748570 A T TDRKH Splice_Site p.X406_splice 0.17 TCGA-BR-A4PF-01 1 152276817 152276817 G A FLG Silent p.S3515S 0.18 TCGA-BR-A4PF-01 1 156508624 156508624 A G IQGAP3 Silent p.T1086T 0.17 TCGA-BR-A4PF-01 1 1650859 1650859 G C CDK11A Missense_Mutation p.P88R 0.06 deleterious_low_confidence(0) probably_damaging(0.919) TCGA-BR-A4PF-01 1 1650867 1650867 G T CDK11A Silent p.I85I 0.06 TCGA-BR-A4PF-01 1 186081953 186081953 C T HMCN1 Nonsense_Mutation p.R3667* 0.21 TCGA-BR-A4PF-01 1 196303015 196303015 A G KCNT2 Silent p.D653D 0.39 TCGA-BR-A4PF-01 1 196887602 196887602 C A CFHR4 3'UTR 0.20 TCGA-BR-A4PF-01 1 196953209 196953209 G T CFHR5 Missense_Mutation p.E124D 0.24 tolerated(0.34) benign(0.007) TCGA-BR-A4PF-01 1 207010359 207010359 G T IL19 Missense_Mutation p.Q105H 0.10 tolerated(0.63) benign(0.002) TCGA-BR-A4PF-01 1 207222944 207222944 T G YOD1 Silent p.A156A 0.13 TCGA-BR-A4PF-01 1 209798993 209798993 C A LAMB3 Missense_Mutation p.R659M 0.27 deleterious(0) probably_damaging(0.993) TCGA-BR-A4PF-01 1 222802954 222802955 GG - MIA3 Frame_Shift_Del p.V799Qfs*20 0.15 TCGA-BR-A4PF-01 1 248616492 248616492 C T OR2T2 Missense_Mutation p.R132W 0.10 deleterious(0) possibly_damaging(0.72) TCGA-BR-A4PF-01 1 3319370 3319370 G A PRDM16 Missense_Mutation p.R231H 0.17 tolerated(0.07) possibly_damaging(0.473) TCGA-BR-A4PF-01 20 30897661 30897661 G A KIF3B Silent p.S27S 0.17 TCGA-BR-A4PF-01 20 55033575 55033575 G A CASS4 Missense_Mutation p.M711I 0.11 deleterious(0.02) benign(0.239) TCGA-BR-A4PF-01 20 60883767 60883767 G A ADRM1 Missense_Mutation p.G392S 0.28 tolerated(0.28) unknown(0) TCGA-BR-A4PF-01 20 60909261 60909261 G A LAMA5 Missense_Mutation p.A907V 0.39 benign(0.046) TCGA-BR-A4PF-01 21 11038890 11038890 A T BAGE2 RNA 0.06 TCGA-BR-A4PF-01 2 114369731 114369731 G A RPL23AP7 RNA 0.18 TCGA-BR-A4PF-01 2 141232848 141232848 C T LRP1B Missense_Mutation p.G3162R 0.20 probably_damaging(0.953) TCGA-BR-A4PF-01 2 162891790 162891790 C T DPP4 Missense_Mutation p.G220S 0.24 tolerated(0.12) benign(0.123) TCGA-BR-A4PF-01 2 167322420 167322421 - A SCN7A Frame_Shift_Ins p.L248Sfs*19 0.19 TCGA-BR-A4PF-01 2 179643826 179643826 C T TTN Missense_Mutation p.G1328D 0.17 TCGA-BR-A4PF-01 2 201531408 201531408 A G AOX1 Splice_Site p.X1182_splice 0.16 TCGA-BR-A4PF-01 2 201531430 201531430 C T AOX1 Silent p.V1188V 0.14 TCGA-BR-A4PF-01 2 219925067 219925067 T C IHH Silent p.P41P 0.22 TCGA-BR-A4PF-01 2 71743364 71743364 T A DYSF Missense_Mutation p.F315I 0.18 tolerated(0.31) benign(0.07) TCGA-BR-A4PF-01 3 167750460 167750460 C T GOLIM4 Missense_Mutation p.A342T 0.28 tolerated(0.09) possibly_damaging(0.864) TCGA-BR-A4PF-01 3 184542473 184542473 C T VPS8 Missense_Mutation p.T18M 0.09 tolerated_low_confidence(0.05) benign(0.23) TCGA-BR-A4PF-01 3 57232304 57232304 C T HESX1 Missense_Mutation p.R160H 0.22 deleterious(0.01) probably_damaging(0.919) TCGA-BR-A4PF-01 4 123176382 123176382 A G KIAA1109 Missense_Mutation p.I2108V 0.26 probably_damaging(0.923) TCGA-BR-A4PF-01 4 123336720 123336720 G T ADAD1 Missense_Mutation p.G479V 0.17 deleterious(0) probably_damaging(0.987) TCGA-BR-A4PF-01 4 123868603 123868603 A G SPATA5 Silent p.G558G 0.30 TCGA-BR-A4PF-01 4 39318611 39318611 C T RFC1 Missense_Mutation p.R376H 0.14 deleterious(0.03) possibly_damaging(0.904) TCGA-BR-A4PF-01 4 46042913 46042913 G T GABRG1 3'UTR 0.12 TCGA-BR-A4PF-01 4 56768601 56768601 G A EXOC1 Missense_Mutation p.R810H 0.30 deleterious(0) probably_damaging(0.998) TCGA-BR-A4PF-01 4 85675010 85675012 TCT - WDFY3 In_Frame_Del p.E1860del 0.20 TCGA-BR-A4PF-01 4 94316852 94316852 C G GRID2 Missense_Mutation p.T447S 0.25 tolerated(0.13) probably_damaging(0.993) TCGA-BR-A4PF-01 5 140572528 140572528 G A PCDHB10 Missense_Mutation p.D135N 0.16 tolerated_low_confidence(0.1) benign(0.002) TCGA-BR-A4PF-01 5 150945845 150945845 C T FAT2 Missense_Mutation p.R883H 0.32 benign(0.44) TCGA-BR-A4PF-01 5 178454513 178454513 C A ZNF879 Missense_Mutation p.Q25K 0.26 tolerated(0.06) benign(0.055) TCGA-BR-A4PF-01 5 7802364 7802364 G A ADCY2 Missense_Mutation p.V888I 0.42 tolerated(0.08) probably_damaging(0.991) TCGA-BR-A4PF-01 5 82808156 82808156 T A VCAN Missense_Mutation p.F328Y 0.16 tolerated(0.22) probably_damaging(0.918) TCGA-BR-A4PF-01 6 111913074 111913074 G C TRAF3IP2 Missense_Mutation p.H72Q 0.10 tolerated_low_confidence(0.13) benign(0.005) TCGA-BR-A4PF-01 6 127797234 127797234 C T SOGA3 Missense_Mutation p.R646Q 0.16 tolerated(0.11) probably_damaging(1) TCGA-BR-A4PF-01 6 152647757 152647757 A C SYNE1 Silent p.T4989T 0.41 TCGA-BR-A4PF-01 6 29761745 29761745 G A HLA-V Intron 0.30 TCGA-BR-A4PF-01 6 31504170 31504170 T C DDX39B Intron 0.32 TCGA-BR-A4PF-01 6 32035600 32035600 G T TNXB Missense_Mutation p.Q2128K 0.32 probably_damaging(0.915) TCGA-BR-A4PF-01 6 4119493 4119493 G A ECI2 Missense_Mutation p.P271L 0.29 deleterious(0) probably_damaging(1) TCGA-BR-A4PF-01 7 100061261 100061261 C G C7orf61 Missense_Mutation p.D38H 0.09 tolerated(0.05) possibly_damaging(0.575) TCGA-BR-A4PF-01 7 100190614 100190614 C A FBXO24 Missense_Mutation p.T294N 0.07 deleterious_low_confidence(0.02) benign(0.403) TCGA-BR-A4PF-01 7 148895532 148895532 G A ZNF282 Silent p.L91L 0.32 TCGA-BR-A4PF-01 7 157155939 157155939 G A DNAJB6 Silent p.A50A 0.17 TCGA-BR-A4PF-01 7 30922556 30922556 G A FAM188B Missense_Mutation p.E725K 0.17 deleterious(0.05) benign(0.008) TCGA-BR-A4PF-01 7 44431997 44431997 G A NUDCD3 Missense_Mutation p.R292C 0.21 deleterious(0) possibly_damaging(0.798) TCGA-BR-A4PF-01 7 53103920 53103920 C A POM121L12 Missense_Mutation p.P186T 0.21 tolerated(0.09) benign(0.003) TCGA-BR-A4PF-01 7 82595405 82595406 - T PCLO Frame_Shift_Ins p.P1234Afs*11 0.16 TCGA-BR-A4PF-01 7 86416261 86416261 G A GRM3 Missense_Mutation p.E385K 0.22 tolerated(0.1) benign(0.022) TCGA-BR-A4PF-01 8 135613822 135613822 C T ZFAT Missense_Mutation p.A714T 0.14 deleterious(0) probably_damaging(0.997) TCGA-BR-A4PF-01 8 144998131 144998131 C T PLEC Missense_Mutation p.R2126H 0.62 unknown(0) TCGA-BR-A4PF-01 8 33416169 33416182 AAGACAAAGATGCC - RNF122 Frame_Shift_Del p.G45Hfs*21 0.40 TCGA-BR-A4PF-01 8 52321614 52321614 G A PXDNL Missense_Mutation p.A857V 0.23 tolerated(0.25) benign(0.26) TCGA-BR-A4PF-01 8 82606874 82606874 C G SLC10A5 Missense_Mutation p.E112Q 0.11 tolerated(0.4) benign(0.001) TCGA-BR-A4PF-01 9 113496549 113496549 G A MUSK Missense_Mutation p.R216Q 0.24 tolerated(0.19) possibly_damaging(0.686) TCGA-BR-A4PF-01 9 136202972 136202972 C A SURF6 5'UTR 0.20 TCGA-BR-A4PF-01 9 17416105 17416105 A G CNTLN Missense_Mutation p.E1011G 0.23 tolerated(0.07) possibly_damaging(0.818) TCGA-BR-A4PF-01 9 2054682 2054682 G T SMARCA2 Missense_Mutation p.V378L 0.22 benign(0.167) TCGA-BR-A4PF-01 X 107224569 107224569 G A TEX13B Missense_Mutation p.A227V 0.24 tolerated(0.18) benign(0.093) TCGA-BR-A4PF-01 X 21667117 21667117 G A CNKSR2 Missense_Mutation p.R954Q 0.22 tolerated(0.28) benign(0.035) TCGA-BR-A4PF-01 X 91090690 91090690 T G PCDH11X Missense_Mutation p.F63V 0.51 tolerated(0.24) possibly_damaging(0.472) TCGA-BR-A4QI-01 10 102747079 102747079 C T MRPL43 Missense_Mutation p.R41H 0.21 deleterious(0.02) possibly_damaging(0.512) TCGA-BR-A4QI-01 10 118363625 118363625 A T PNLIPRP1 Missense_Mutation p.N383Y 0.19 deleterious(0.02) possibly_damaging(0.63) TCGA-BR-A4QI-01 10 16911742 16911742 T A CUBN Missense_Mutation p.K3116M 0.12 tolerated(0.1) possibly_damaging(0.657) TCGA-BR-A4QI-01 10 26830559 26830559 T C APBB1IP Missense_Mutation p.Y365H 0.20 deleterious(0) probably_damaging(0.998) TCGA-BR-A4QI-01 10 69881710 69881710 G C MYPN Missense_Mutation p.R172T 0.07 deleterious(0) possibly_damaging(0.678) TCGA-BR-A4QI-01 10 75548519 75548519 G A ZSWIM8 Silent p.V100V 0.11 TCGA-BR-A4QI-01 10 81272670 81272670 T C EIF5AL1 Missense_Mutation p.F89L 0.13 tolerated(0.06) benign(0.012) TCGA-BR-A4QI-01 10 85994113 85994113 G T LRIT1 Missense_Mutation p.A204E 0.14 tolerated(0.09) benign(0.049) TCGA-BR-A4QI-01 10 93582083 93582083 T G TNKS2 Silent p.S253S 0.23 TCGA-BR-A4QI-01 10 97918525 97918525 T A ZNF518A RNA 0.21 TCGA-BR-A4QI-01 11 1017432 1017432 C T MUC6 Missense_Mutation p.S1790N 0.03 benign(0.213) TCGA-BR-A4QI-01 11 113780172 113780172 G A HTR3B Missense_Mutation p.D70N 0.46 tolerated(0.4) probably_damaging(0.981) TCGA-BR-A4QI-01 11 56057747 56057747 A G OR8H1 Silent p.S264S 0.51 TCGA-BR-A4QI-01 11 65266460 65266460 T G MALAT1 RNA 0.22 TCGA-BR-A4QI-01 11 68658789 68658789 A G MRPL21 3'UTR 0.57 TCGA-BR-A4QI-01 11 812594 812594 G T RPLP2 Missense_Mutation p.G78C 0.12 tolerated(0.1) unknown(0) TCGA-BR-A4QI-01 11 89224436 89224436 C T NOX4 5'UTR 0.38 TCGA-BR-A4QI-01 12 102295137 102295137 C T DRAM1 Missense_Mutation p.P90S 0.29 tolerated(0.65) benign(0.07) TCGA-BR-A4QI-01 12 120660701 120660701 T A PXN Missense_Mutation p.N153I 0.29 deleterious(0) probably_damaging(0.996) TCGA-BR-A4QI-01 12 12247709 12247709 G A BCL2L14 Missense_Mutation p.E264K 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-BR-A4QI-01 12 21689968 21689968 G A GYS2 Missense_Mutation p.R678W 0.17 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-BR-A4QI-01 12 50384086 50384086 G T RACGAP1 Missense_Mutation p.Q622K 0.21 tolerated(0.18) possibly_damaging(0.772) TCGA-BR-A4QI-01 12 54107590 54107590 G A CALCOCO1 Silent p.S562S 0.19 TCGA-BR-A4QI-01 12 56428613 56428613 G A IKZF4 Missense_Mutation p.R419Q 0.11 deleterious(0.04) possibly_damaging(0.536) TCGA-BR-A4QI-01 12 62104163 62104163 G C FAM19A2 3'UTR 0.21 TCGA-BR-A4QI-01 13 111329399 111329399 T A CARS2 Missense_Mutation p.K236I 0.53 deleterious(0) probably_damaging(0.988) TCGA-BR-A4QI-01 13 29933476 29933476 C T MTUS2 Missense_Mutation p.R1005W 0.38 deleterious(0) possibly_damaging(0.85) TCGA-BR-A4QI-01 13 36748935 36748935 G A SOHLH2 Missense_Mutation p.A315V 0.64 tolerated(1) benign(0.03) TCGA-BR-A4QI-01 14 105945789 105945789 A G CRIP2 Missense_Mutation p.Y247C 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-BR-A4QI-01 14 70713708 70713708 A G ADAM21P1 RNA 0.13 TCGA-BR-A4QI-01 14 72054702 72054702 G A SIPA1L1 Missense_Mutation p.R38H 0.17 tolerated(0.21) probably_damaging(0.988) TCGA-BR-A4QI-01 14 86089570 86089570 G A FLRT2 Missense_Mutation p.R571H 0.17 tolerated(0.32) probably_damaging(0.959) TCGA-BR-A4QI-01 14 94756415 94756415 A G SERPINA10 Silent p.F172F 0.20 TCGA-BR-A4QI-01 15 24922516 24922516 C G NPAP1 Missense_Mutation p.P501R 0.37 tolerated(0.53) probably_damaging(0.961) TCGA-BR-A4QI-01 15 25339267 25339267 C T SNORD116-24 RNA 0.04 TCGA-BR-A4QI-01 15 41805064 41805064 G T LTK Missense_Mutation p.S67Y 0.16 deleterious_low_confidence(0.02) benign(0.133) TCGA-BR-A4QI-01 15 48766498 48766498 G A FBN1 Silent p.R1388R 0.22 TCGA-BR-A4QI-01 16 30771518 30771518 C T C16orf93 Intron 0.65 TCGA-BR-A4QI-01 16 89702385 89702385 G A DPEP1 Silent p.L58L 0.11 TCGA-BR-A4QI-01 16 89986303 89986303 C T MC1R Missense_Mutation p.R213W 0.09 deleterious(0) benign(0.079) TCGA-BR-A4QI-01 17 11554622 11554622 T G DNAH9 Silent p.T778T 0.66 TCGA-BR-A4QI-01 17 26940497 26940498 CT - RP11-192H23.4 Frame_Shift_Del p.E95Vfs*4 0.36 TCGA-BR-A4QI-01 17 32647376 32647376 C A CCL8 Silent p.T55T 0.21 TCGA-BR-A4QI-01 17 38447729 38447729 T A CDC6 Missense_Mutation p.Y157N 0.04 deleterious(0) probably_damaging(0.993) TCGA-BR-A4QI-01 17 38907471 38907471 G A KRT25 Silent p.Y259Y 0.26 TCGA-BR-A4QI-01 17 38927474 38927474 G A KRT26 Silent p.T152T 0.09 TCGA-BR-A4QI-01 17 3921227 3921227 C T ZZEF1 Missense_Mutation p.R2515Q 0.09 tolerated(0.09) benign(0.054) TCGA-BR-A4QI-01 17 40721585 40721585 C T MLX Missense_Mutation p.T200M 0.13 tolerated(0.22) benign(0.133) TCGA-BR-A4QI-01 17 5264577 5264577 C T RABEP1 Silent p.F390F 0.06 TCGA-BR-A4QI-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.74 deleterious(0) probably_damaging(0.997) TCGA-BR-A4QI-01 17 7829022 7829022 T C KCNAB3 Missense_Mutation p.S173G 0.11 deleterious(0) probably_damaging(0.999) TCGA-BR-A4QI-01 18 14479143 14479143 T C CXADRP3 RNA 0.44 TCGA-BR-A4QI-01 18 28980860 28980860 G A DSG4 Missense_Mutation p.D432N 0.18 tolerated(0.64) probably_damaging(1) TCGA-BR-A4QI-01 19 11531515 11531515 A C CCDC151 Silent p.S592S 0.07 TCGA-BR-A4QI-01 19 16641681 16641681 G A CHERP Nonsense_Mutation p.Q229* 0.18 TCGA-BR-A4QI-01 19 16884108 16884108 G A NWD1 Missense_Mutation p.R861Q 0.20 tolerated(1) benign(0.004) TCGA-BR-A4QI-01 19 46215503 46215503 G A FBXO46 Silent p.D417D 0.09 TCGA-BR-A4QI-01 19 48806095 48806095 G A CCDC114 Missense_Mutation p.R329C 0.16 deleterious(0) probably_damaging(0.984) TCGA-BR-A4QI-01 19 51501058 51501058 G T KLK8 Silent p.I237I 0.26 TCGA-BR-A4QI-01 19 55324712 55324712 A C KIR2DL4 Intron 0.20 TCGA-BR-A4QI-01 19 8808335 8808335 G A ACTL9 Silent p.A239A 0.39 TCGA-BR-A4QI-01 19 9059771 9059771 C A MUC16 Missense_Mutation p.M9225I 0.27 unknown(0) TCGA-BR-A4QI-01 1 109336246 109336246 C T STXBP3 Missense_Mutation p.H336Y 0.18 deleterious(0.01) benign(0.015) TCGA-BR-A4QI-01 1 12317070 12317070 C A VPS13D Missense_Mutation p.F289L 0.20 possibly_damaging(0.688) TCGA-BR-A4QI-01 1 152192292 152192292 C G HRNR Missense_Mutation p.G605R 0.35 unknown(0) TCGA-BR-A4QI-01 1 158261017 158261017 A T CD1C Missense_Mutation p.E52V 0.34 deleterious(0) benign(0.145) TCGA-BR-A4QI-01 1 158297985 158297985 T C CD1B 3'UTR 0.42 TCGA-BR-A4QI-01 1 158390365 158390365 C A OR10K2 Missense_Mutation p.A98S 0.42 deleterious(0.02) benign(0.057) TCGA-BR-A4QI-01 1 158736147 158736147 G A OR6N1 Missense_Mutation p.A109V 0.27 tolerated(0.81) benign(0.431) TCGA-BR-A4QI-01 1 161049643 161049643 C T PVRL4 Missense_Mutation p.G59D 0.37 tolerated(0.51) benign(0.007) TCGA-BR-A4QI-01 1 165514100 165514100 C T LRRC52 Silent p.N189N 0.18 TCGA-BR-A4QI-01 1 169823652 169823652 T G SCYL3 Missense_Mutation p.Q643P 0.23 tolerated(0.06) benign(0.005) TCGA-BR-A4QI-01 1 176740108 176740108 A G PAPPA2 Missense_Mutation p.S1503G 0.49 deleterious(0.01) benign(0.046) TCGA-BR-A4QI-01 1 182908441 182908441 C T SHCBP1L Missense_Mutation p.E316K 0.10 tolerated(0.45) possibly_damaging(0.858) TCGA-BR-A4QI-01 1 190195400 190195400 G T BRINP3 Missense_Mutation p.A258E 0.17 deleterious(0) probably_damaging(0.996) TCGA-BR-A4QI-01 1 19465681 19465681 G A UBR4 Missense_Mutation p.A2876V 0.22 possibly_damaging(0.838) TCGA-BR-A4QI-01 1 223178997 223178998 AG - DISP1 Frame_Shift_Del p.D1421Rfs*11 0.25 TCGA-BR-A4QI-01 1 22446680 22446680 C G WNT4 Missense_Mutation p.E307Q 0.26 tolerated(0.06) possibly_damaging(0.516) TCGA-BR-A4QI-01 1 27876849 27876849 T C AHDC1 Missense_Mutation p.K593R 0.15 deleterious(0) possibly_damaging(0.486) TCGA-BR-A4QI-01 1 36826900 36826900 C T STK40 Missense_Mutation p.E12K 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.541) TCGA-BR-A4QI-01 1 4832493 4832493 T C AJAP1 Silent p.S357S 0.24 TCGA-BR-A4QI-01 1 7993258 7993258 G A TNFRSF9 Missense_Mutation p.R215W 0.21 tolerated(1) benign(0.001) TCGA-BR-A4QI-01 1 95330312 95330312 C G SLC44A3 Missense_Mutation p.P418A 0.20 tolerated(0.15) possibly_damaging(0.803) TCGA-BR-A4QI-01 20 20243713 20243713 C T C20orf26 Silent p.N814N 0.41 TCGA-BR-A4QI-01 20 51870644 51870644 G A TSHZ2 Missense_Mutation p.R216Q 0.40 deleterious(0.01) probably_damaging(0.998) TCGA-BR-A4QI-01 20 61512623 61512623 T A DIDO1 Missense_Mutation p.Q1562L 0.13 probably_damaging(0.996) TCGA-BR-A4QI-01 22 19130142 19130142 C T DGCR14 Silent p.V103V 0.45 TCGA-BR-A4QI-01 22 26422846 26422846 G A MYO18B Silent p.S2302S 0.43 TCGA-BR-A4QI-01 22 38962648 38962648 C T DMC1 Missense_Mutation p.G64R 0.44 deleterious(0) probably_damaging(0.994) TCGA-BR-A4QI-01 2 111415164 111415164 A T BUB1 Silent p.S525S 0.20 TCGA-BR-A4QI-01 2 141004675 141004675 T G LRP1B Missense_Mutation p.K4435T 0.20 benign(0.403) TCGA-BR-A4QI-01 2 15542374 15542374 C T NBAS Missense_Mutation p.E997K 0.17 deleterious(0.03) benign(0.164) TCGA-BR-A4QI-01 2 202216070 202216070 G A ALS2CR12 Missense_Mutation p.R20W 0.54 deleterious(0.02) probably_damaging(0.939) TCGA-BR-A4QI-01 2 20871023 20871023 C T GDF7 Silent p.I397I 0.34 TCGA-BR-A4QI-01 2 215279303 215279303 T A VWC2L Missense_Mutation p.F129Y 0.14 deleterious(0.01) probably_damaging(0.943) TCGA-BR-A4QI-01 2 239353036 239353036 G T ASB1 Missense_Mutation p.R183L 0.32 tolerated(0.37) benign(0.002) TCGA-BR-A4QI-01 2 24480916 24480916 G A ITSN2 Missense_Mutation p.T910I 0.12 tolerated(0.18) unknown(0) TCGA-BR-A4QI-01 2 25038399 25038410 GTGTCTGCATCA - CENPO In_Frame_Del p.V124_S127del 0.36 TCGA-BR-A4QI-01 2 29246051 29246051 T C FAM179A Silent p.T537T 0.25 TCGA-BR-A4QI-01 2 62066655 62066655 C T FAM161A Missense_Mutation p.R495H 0.26 tolerated(1) benign(0.001) TCGA-BR-A4QI-01 2 85836595 85836595 G C C2orf68 Missense_Mutation p.A114G 0.03 deleterious(0.03) possibly_damaging(0.827) TCGA-BR-A4QI-01 2 99797402 99797402 C A MITD1 Missense_Mutation p.A15S 0.14 deleterious(0.01) possibly_damaging(0.856) TCGA-BR-A4QI-01 3 122630793 122630793 C T SEMA5B Missense_Mutation p.R1061H 0.52 deleterious(0) probably_damaging(0.955) TCGA-BR-A4QI-01 3 148742051 148742051 G A GYG1 Missense_Mutation p.V274I 0.62 tolerated(0.39) benign(0.001) TCGA-BR-A4QI-01 3 170805248 170805248 A G TNIK Silent p.F923F 0.07 TCGA-BR-A4QI-01 3 170912366 170912366 C - TNIK Frame_Shift_Del p.G122Vfs*4 0.08 TCGA-BR-A4QI-01 3 46450611 46450611 C T CCRL2 3'UTR 0.56 TCGA-BR-A4QI-01 3 52255548 52255548 A G TLR9 Silent p.Y1082Y 0.32 TCGA-BR-A4QI-01 3 77666773 77666773 C T ROBO2 Nonsense_Mutation p.R1151* 0.45 TCGA-BR-A4QI-01 4 114204000 114204000 A G ANK2 Missense_Mutation p.K684R 0.41 possibly_damaging(0.508) TCGA-BR-A4QI-01 4 156135406 156135406 G A NPY2R Silent p.P105P 0.46 TCGA-BR-A4QI-01 4 157771437 157771437 C T PDGFC Missense_Mutation p.V84I 0.17 tolerated(0.08) benign(0.174) TCGA-BR-A4QI-01 4 176622915 176622915 C A GPM6A Missense_Mutation p.C14F 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-BR-A4QI-01 4 42403249 42403249 G A SHISA3 Silent p.T166T 0.52 TCGA-BR-A4QI-01 4 44449773 44449773 G A KCTD8 Silent p.R256R 0.29 TCGA-BR-A4QI-01 4 48993570 48993570 G T CWH43 Missense_Mutation p.W112L 0.62 deleterious(0.02) possibly_damaging(0.856) TCGA-BR-A4QI-01 4 52779533 52779533 C T DCUN1D4 Silent p.L266L 0.40 TCGA-BR-A4QI-01 4 66356300 66356300 G A EPHA5 Silent p.N399N 0.16 TCGA-BR-A4QI-01 5 139940666 139940666 T G APBB3 Missense_Mutation p.S292R 0.50 tolerated(0.5) benign(0.015) TCGA-BR-A4QI-01 5 140531624 140531624 C A PCDHB6 Missense_Mutation p.Q596K 0.45 deleterious(0) possibly_damaging(0.677) TCGA-BR-A4QI-01 5 180622459 180622459 G A TRIM7 Missense_Mutation p.R415C 0.29 deleterious(0) probably_damaging(0.998) TCGA-BR-A4QI-01 5 35667221 35667221 A G SPEF2 Silent p.K405K 0.81 TCGA-BR-A4QI-01 5 37834836 37834836 C T GDNF Silent p.P38P 0.16 TCGA-BR-A4QI-01 5 38258870 38258870 G A EGFLAM Missense_Mutation p.R5Q 0.07 tolerated_low_confidence(0.43) unknown(0) TCGA-BR-A4QI-01 5 5186212 5186212 T A ADAMTS16 Missense_Mutation p.Y271N 0.24 deleterious(0) probably_damaging(0.91) TCGA-BR-A4QI-01 5 54649063 54649063 A G SKIV2L2 Missense_Mutation p.N500S 0.18 tolerated(1) benign(0.002) TCGA-BR-A4QI-01 6 100897520 100897520 T A SIM1 Missense_Mutation p.E135V 0.36 deleterious(0) probably_damaging(1) TCGA-BR-A4QI-01 6 125402621 125402621 G A RNF217 Missense_Mutation p.G216E 0.22 deleterious(0.02) possibly_damaging(0.779) TCGA-BR-A4QI-01 6 132194115 132194115 A C ENPP1 Missense_Mutation p.K497T 0.42 deleterious(0) probably_damaging(1) TCGA-BR-A4QI-01 6 134494621 134494621 G A SGK1 Silent p.I199I 0.11 TCGA-BR-A4QI-01 6 161990446 161990447 - T PARK2 Frame_Shift_Ins p.G292Rfs*8 0.30 TCGA-BR-A4QI-01 6 46657611 46657611 C T TDRD6 Silent p.D582D 0.07 TCGA-BR-A4QI-01 7 100490818 100490818 G T ACHE Missense_Mutation p.L346I 0.06 deleterious(0.01) possibly_damaging(0.473) TCGA-BR-A4QI-01 7 100677488 100677488 G A MUC17 Missense_Mutation p.D931N 0.09 unknown(0) TCGA-BR-A4QI-01 7 102994396 102994396 G C PSMC2 Missense_Mutation p.L33F 0.35 deleterious(0.03) probably_damaging(0.999) TCGA-BR-A4QI-01 7 149129715 149129715 C T ZNF777 Missense_Mutation p.E550K 0.29 tolerated(0.08) possibly_damaging(0.718) TCGA-BR-A4QI-01 7 28996249 28996249 C T AC005013.5 5'Flank 0.13 TCGA-BR-A4QI-01 7 31690769 31690769 A T CCDC129 Missense_Mutation p.E892V 0.18 deleterious(0) probably_damaging(0.99) TCGA-BR-A4QI-01 7 34118544 34118544 C T BMPER Missense_Mutation p.T385M 0.27 deleterious(0) probably_damaging(0.98) TCGA-BR-A4QI-01 7 38247172 38247172 C T STARD3NL Missense_Mutation p.R23C 0.15 deleterious(0.04) benign(0.209) TCGA-BR-A4QI-01 7 43992390 43992390 G A UBE2D4 3'UTR 0.17 TCGA-BR-A4QI-01 8 116631899 116631899 T G TRPS1 Missense_Mutation p.Q142H 0.25 deleterious_low_confidence(0.02) possibly_damaging(0.501) TCGA-BR-A4QI-01 8 144297360 144297360 C T GPIHBP1 Silent p.A174A 0.14 TCGA-BR-A4QI-01 8 21983209 21983209 C T HR Missense_Mutation p.G481E 0.29 tolerated(0.33) benign(0.011) TCGA-BR-A4QI-01 8 39695768 39695768 G A ADAM2 5'UTR 0.10 TCGA-BR-A4QI-01 8 68939478 68939478 C T PREX2 Missense_Mutation p.R155W 0.43 deleterious(0) probably_damaging(0.998) TCGA-BR-A4QI-01 8 75737570 75737570 A T PI15 Missense_Mutation p.D29V 0.52 tolerated(0.27) benign(0.076) TCGA-BR-A4QI-01 9 130279138 130279138 C T FAM129B Missense_Mutation p.R324Q 0.36 tolerated(0.07) probably_damaging(0.989) TCGA-BR-A4QI-01 9 138377878 138377878 G T PPP1R26 Missense_Mutation p.A508S 0.23 tolerated(0.22) probably_damaging(0.923) TCGA-BR-A4QI-01 9 21304767 21304767 T A IFNA5 Silent p.A163A 0.48 TCGA-BR-A4QI-01 9 85863158 85863158 T G FRMD3 Missense_Mutation p.E490A 0.14 tolerated(0.65) benign(0.266) TCGA-BR-A4QI-01 X 117752692 117752692 G C DOCK11 Splice_Site p.X1157_splice 0.14 TCGA-BR-A4QI-01 X 138871582 138871582 G A ATP11C Silent p.C427C 0.26 TCGA-BR-A4QI-01 X 151935401 151935401 G C MAGEA3 Missense_Mutation p.L256V 0.11 deleterious(0.04) possibly_damaging(0.894) TCGA-BR-A4QI-01 X 64957071 64957071 A C MSN Missense_Mutation p.E374D 0.61 tolerated(0.38) benign(0.049) TCGA-BR-A4QL-01 10 101120624 101120624 C T CNNM1 Missense_Mutation p.R584W 0.28 deleterious(0.04) probably_damaging(0.965) TCGA-BR-A4QL-01 10 101295035 101295035 G A NKX2-3 Missense_Mutation p.A218T 0.43 tolerated(0.44) benign(0.039) TCGA-BR-A4QL-01 10 101464363 101464363 A G ENTPD7 Missense_Mutation p.T580A 0.30 tolerated(1) benign(0) TCGA-BR-A4QL-01 10 102789811 102789811 G - PDZD7 Frame_Shift_Del p.R56Afs*81 0.32 TCGA-BR-A4QL-01 10 103531218 103531218 A G FGF8 Splice_Site p.X148_splice 0.36 TCGA-BR-A4QL-01 10 103827533 103827533 C - HPS6 Frame_Shift_Del p.P769Rfs*36 0.25 TCGA-BR-A4QL-01 10 103991469 103991469 C T PITX3 Missense_Mutation p.R66H 0.50 deleterious(0) probably_damaging(0.954) TCGA-BR-A4QL-01 10 104128195 104128195 G A GBF1 Missense_Mutation p.A954T 0.38 tolerated(0.21) benign(0.222) TCGA-BR-A4QL-01 10 104687243 104687243 G A CNNM2 Intron 0.33 TCGA-BR-A4QL-01 10 104836892 104836892 G A CNNM2 Silent p.T861T 0.25 TCGA-BR-A4QL-01 10 105162907 105162907 C T PDCD11 Silent p.C89C 0.37 TCGA-BR-A4QL-01 10 105185248 105185248 C T PDCD11 Nonsense_Mutation p.R1091* 0.27 TCGA-BR-A4QL-01 10 105200090 105200090 G A PDCD11 Missense_Mutation p.G1398R 0.34 tolerated(0.27) benign(0.001) TCGA-BR-A4QL-01 10 105372688 105372688 C T SH3PXD2A Missense_Mutation p.V366I 0.36 tolerated(0.3) benign(0.003) TCGA-BR-A4QL-01 10 114428018 114428019 AG - VTI1A Frame_Shift_Del p.E158Kfs*7 0.24 TCGA-BR-A4QL-01 10 114912186 114912186 C T TCF7L2 Missense_Mutation p.A419V 0.35 deleterious(0) probably_damaging(0.998) TCGA-BR-A4QL-01 10 11504898 11504898 C T USP6NL Missense_Mutation p.V694I 0.29 tolerated_low_confidence(0.51) benign(0.008) TCGA-BR-A4QL-01 10 115662308 115662308 A - NHLRC2 Frame_Shift_Del p.R486Gfs*27 0.29 TCGA-BR-A4QL-01 10 116082999 116082999 C G AFAP1L2 Missense_Mutation p.A113P 0.40 tolerated(1) benign(0) TCGA-BR-A4QL-01 10 11805348 11805348 G A ECHDC3 Silent p.K239K 0.38 TCGA-BR-A4QL-01 10 118708437 118708437 T - KIAA1598 Frame_Shift_Del p.K202Nfs*8 0.33 TCGA-BR-A4QL-01 10 118896129 118896129 G T VAX1 Missense_Mutation p.L95M 0.10 deleterious(0) unknown(0) TCGA-BR-A4QL-01 10 121582587 121582587 T C INPP5F Silent p.P679P 0.32 TCGA-BR-A4QL-01 10 122645359 122645359 A G WDR11 Missense_Mutation p.R628G 0.36 deleterious(0.01) benign(0.017) TCGA-BR-A4QL-01 10 123970335 123970335 C T TACC2 Missense_Mutation p.P2132L 0.04 probably_damaging(1) TCGA-BR-A4QL-01 10 124713679 124713679 C A C10orf88 Nonsense_Mutation p.E6* 0.24 TCGA-BR-A4QL-01 10 124753240 124753241 - A IKZF5 3'UTR 0.36 TCGA-BR-A4QL-01 10 126727587 126727587 G A CTBP2 Nonsense_Mutation p.R13* 0.38 TCGA-BR-A4QL-01 10 127438079 127438079 C T EDRF1 Silent p.C1074C 0.33 TCGA-BR-A4QL-01 10 128851058 128851058 G A DOCK1 Missense_Mutation p.R751H 0.37 tolerated(0.09) benign(0.019) TCGA-BR-A4QL-01 10 129902379 129902379 T C MKI67 Silent p.S2575S 0.43 TCGA-BR-A4QL-01 10 131641447 131641447 G A EBF3 Missense_Mutation p.A374V 0.17 deleterious(0) benign(0.003) TCGA-BR-A4QL-01 10 13364896 13364896 C T SEPHS1 Silent p.A301A 0.42 TCGA-BR-A4QL-01 10 134598431 134598431 C - NKX6-2 Frame_Shift_Del p.D275Tfs*32 0.34 TCGA-BR-A4QL-01 10 16562696 16562696 C T C1QL3 Silent p.T123T 0.34 TCGA-BR-A4QL-01 10 16563070 16563070 C - C1QL3 5'UTR 0.21 TCGA-BR-A4QL-01 10 17107573 17107574 - A CUBN Frame_Shift_Ins p.V1025Cfs*3 0.26 TCGA-BR-A4QL-01 10 17636370 17636370 A - PTPLA Frame_Shift_Del p.F206Lfs*23 0.30 TCGA-BR-A4QL-01 10 17908612 17908612 G - MRC1L1 Frame_Shift_Del p.G610Afs*6 0.79 TCGA-BR-A4QL-01 10 21804329 21804329 C T SKIDA1 Missense_Mutation p.R808H 0.42 deleterious(0.02) unknown(0) TCGA-BR-A4QL-01 10 22045521 22045521 C T DNAJC1 3'UTR 0.62 TCGA-BR-A4QL-01 10 26305796 26305796 G A MYO3A Missense_Mutation p.V186I 0.32 deleterious(0.04) possibly_damaging(0.863) TCGA-BR-A4QL-01 10 26446278 26446278 C T MYO3A Nonsense_Mutation p.Q945* 0.37 TCGA-BR-A4QL-01 10 26505662 26505662 G A GAD2 5'UTR 0.45 TCGA-BR-A4QL-01 10 26570016 26570016 G T GAD2 Missense_Mutation p.E412D 0.36 tolerated(0.33) probably_damaging(0.96) TCGA-BR-A4QL-01 10 27687763 27687763 A - PTCHD3 Frame_Shift_Del p.F588Lfs*18 0.36 TCGA-BR-A4QL-01 10 27702415 27702415 G A PTCHD3 Silent p.C255C 0.54 TCGA-BR-A4QL-01 10 29760116 29760116 C - SVIL Frame_Shift_Del p.M1863Wfs*44 0.38 TCGA-BR-A4QL-01 10 30315305 30315305 G A KIAA1462 Missense_Mutation p.R1258C 0.20 deleterious(0) probably_damaging(0.999) TCGA-BR-A4QL-01 10 31137669 31137669 T C ZNF438 Silent p.K555K 0.38 TCGA-BR-A4QL-01 10 32740786 32740786 T C CCDC7 Silent p.S72S 0.33 TCGA-BR-A4QL-01 10 33018277 33018277 A - C10ORF68 Frame_Shift_Del p.K242Rfs*30 0.36 TCGA-BR-A4QL-01 10 35929087 35929087 G A FZD8 Missense_Mutation p.A424V 0.33 deleterious(0) probably_damaging(0.966) TCGA-BR-A4QL-01 10 372999 372999 G A DIP2C Missense_Mutation p.R1291W 0.40 deleterious(0) probably_damaging(0.998) TCGA-BR-A4QL-01 10 47087071 47087071 G A NPY4R Silent p.P96P 0.13 TCGA-BR-A4QL-01 10 51464747 51464747 C T AGAP7 Missense_Mutation p.R570Q 0.18 tolerated(0.44) benign(0.03) TCGA-BR-A4QL-01 10 51754188 51754188 A G AGAP6 Missense_Mutation p.H132R 0.08 deleterious_low_confidence(0.03) benign(0.012) TCGA-BR-A4QL-01 10 53667314 53667314 C T PRKG1 Missense_Mutation p.A249V 0.36 tolerated(0.44) benign(0.2) TCGA-BR-A4QL-01 10 56077099 56077099 G A PCDH15 Missense_Mutation p.L270F 0.36 deleterious(0.01) possibly_damaging(0.891) TCGA-BR-A4QL-01 10 6008149 6008149 G A IL15RA Missense_Mutation p.T81M 0.52 tolerated(0.06) probably_damaging(0.996) TCGA-BR-A4QL-01 10 61823946 61823946 T - ANK3 Frame_Shift_Del p.K4140Nfs*15 0.09 TCGA-BR-A4QL-01 10 62551805 62551805 T - CDK1 Frame_Shift_Del p.F217Sfs*33 0.13 TCGA-BR-A4QL-01 10 63959571 63959571 T C RTKN2 Silent p.S412S 0.28 TCGA-BR-A4QL-01 10 64967560 64967560 T C JMJD1C Missense_Mutation p.H1290R 0.30 tolerated(0.17) benign(0.003) TCGA-BR-A4QL-01 10 6533724 6533724 G A PRKCQ Silent p.Y237Y 0.33 TCGA-BR-A4QL-01 10 70332153 70332153 A - TET1 Frame_Shift_Del p.K22Rfs*23 0.35 TCGA-BR-A4QL-01 10 71835526 71835526 A G H2AFY2 Missense_Mutation p.K38E 0.35 tolerated(0.07) probably_damaging(0.974) TCGA-BR-A4QL-01 10 72495033 72495033 C T ADAMTS14 Silent p.G490G 0.34 TCGA-BR-A4QL-01 10 72520485 72520485 C - ADAMTS14 Frame_Shift_Del p.L1190Cfs*23 0.19 TCGA-BR-A4QL-01 10 73058904 73058904 C T UNC5B Missense_Mutation p.T903M 0.39 deleterious(0) probably_damaging(1) TCGA-BR-A4QL-01 10 73594249 73594249 C T PSAP Silent p.P18P 0.16 TCGA-BR-A4QL-01 10 75238307 75238307 G A PPP3CB Nonsense_Mutation p.R121* 0.46 TCGA-BR-A4QL-01 10 75451802 75451802 T C AGAP5 Missense_Mutation p.H132R 0.05 deleterious_low_confidence(0) benign(0.027) TCGA-BR-A4QL-01 10 76789460 76789460 C T KAT6B Silent p.Y1626Y 0.50 TCGA-BR-A4QL-01 10 77158594 77158594 C T ZNF503 Silent p.P618P 0.33 TCGA-BR-A4QL-01 10 78651292 78651292 C T KCNMA1 Silent p.A1094A 0.47 TCGA-BR-A4QL-01 10 79553804 79553804 G A DLG5 Missense_Mutation p.A1873V 0.06 deleterious(0) probably_damaging(0.985) TCGA-BR-A4QL-01 10 8006080 8006080 G A TAF3 Missense_Mutation p.D203N 0.46 tolerated(0.16) benign(0.084) TCGA-BR-A4QL-01 10 81053363 81053363 C G ZMIZ1 Missense_Mutation p.P395A 0.38 benign(0.004) TCGA-BR-A4QL-01 10 81067262 81067262 C - ZMIZ1 Frame_Shift_Del p.P925Rfs*82 0.31 TCGA-BR-A4QL-01 10 81072446 81072446 C - ZMIZ1 Frame_Shift_Del p.D1051Tfs*73 0.34 TCGA-BR-A4QL-01 10 81701716 81701716 C T SFTPD Missense_Mutation p.A182T 0.37 tolerated(0.37) benign(0.06) TCGA-BR-A4QL-01 10 82403842 82403842 T - SH2D4B 3'UTR 0.21 TCGA-BR-A4QL-01 10 86132007 86132007 C T CCSER2 Missense_Mutation p.S400L 0.39 deleterious(0) probably_damaging(0.998) TCGA-BR-A4QL-01 10 88676973 88676973 G A BMPR1A Nonsense_Mutation p.W253* 0.46 TCGA-BR-A4QL-01 10 88768527 88768527 G A RP11-96C23.10 3'Flank 0.26 TCGA-BR-A4QL-01 10 890939 890939 T - LARP4B Frame_Shift_Del p.T163Hfs*47 0.30 TCGA-BR-A4QL-01 10 91514406 91514406 T - KIF20B Frame_Shift_Del p.F1455Lfs*10 0.32 TCGA-BR-A4QL-01 10 93247481 93247481 A - HECTD2 Frame_Shift_Del p.I382Sfs*11 0.35 TCGA-BR-A4QL-01 10 94834693 94834693 G A CYP26A1 Missense_Mutation p.R191H 0.42 deleterious(0) probably_damaging(0.989) TCGA-BR-A4QL-01 10 95326941 95326941 G A FFAR4 Missense_Mutation p.R155Q 0.48 tolerated(0.72) benign(0.009) TCGA-BR-A4QL-01 10 97117446 97117446 G A SORBS1 Silent p.D690D 0.36 TCGA-BR-A4QL-01 10 97371130 97371130 G A ALDH18A1 Nonsense_Mutation p.R665* 0.42 TCGA-BR-A4QL-01 10 97920218 97920218 A - ZNF518A RNA 0.23 TCGA-BR-A4QL-01 10 98469322 98469322 A G PIK3AP1 Splice_Site p.X144_splice 0.06 TCGA-BR-A4QL-01 10 98742785 98742785 A - C10orf12 Frame_Shift_Del p.E549Kfs*54 0.31 TCGA-BR-A4QL-01 10 99139503 99139503 G A RRP12 Missense_Mutation p.R520C 0.40 deleterious(0.02) possibly_damaging(0.734) TCGA-BR-A4QL-01 10 99531377 99531377 G A SFRP5 Missense_Mutation p.R72W 0.38 deleterious(0.02) probably_damaging(0.999) TCGA-BR-A4QL-01 10 99625397 99625397 C T CRTAC1 Missense_Mutation p.A632T 0.48 tolerated_low_confidence(1) benign(0) TCGA-BR-A4QL-01 11 100933308 100933308 A G PGR Silent p.I694I 0.39 TCGA-BR-A4QL-01 11 100998809 100998809 G A PGR Silent p.G331G 0.51 TCGA-BR-A4QL-01 11 100999101 100999101 C A PGR Missense_Mutation p.G234V 0.19 deleterious_low_confidence(0.02) benign(0.005) TCGA-BR-A4QL-01 11 102647146 102647146 G - MMP10 Frame_Shift_Del p.P266Lfs*36 0.35 TCGA-BR-A4QL-01 11 104776330 104776330 T - RP11-693N9.2 Intron 0.47 TCGA-BR-A4QL-01 11 108018219 108018219 T - ACAT1 3'UTR 0.26 TCGA-BR-A4QL-01 11 1084335 1084335 G A MUC2 Missense_Mutation p.V823I 0.43 benign(0.028) TCGA-BR-A4QL-01 11 109294696 109294696 G - C11orf87 Frame_Shift_Del p.L115Cfs*162 0.35 TCGA-BR-A4QL-01 11 1096474 1096474 C A MUC2 Missense_Mutation p.P2167T 0.35 unknown(0) TCGA-BR-A4QL-01 11 110128524 110128524 A C RDX Silent p.A222A 0.36 TCGA-BR-A4QL-01 11 111953459 111953460 - A C11orf57 Frame_Shift_Ins p.P218Tfs*10 0.31 TCGA-BR-A4QL-01 11 113803746 113803749 TCTA - HTR3B Frame_Shift_Del p.S211Cfs*23 0.46 TCGA-BR-A4QL-01 11 114118084 114118084 A C ZBTB16 Missense_Mutation p.T597P 0.35 deleterious(0) probably_damaging(0.99) TCGA-BR-A4QL-01 11 114393092 114393092 T C NXPE1 Missense_Mutation p.I272M 0.31 tolerated(0.09) benign(0.14) TCGA-BR-A4QL-01 11 115080343 115080343 G T CADM1 Silent p.T343T 0.44 TCGA-BR-A4QL-01 11 116692194 116692194 C T APOA4 Missense_Mutation p.V194M 0.35 tolerated(0.16) possibly_damaging(0.682) TCGA-BR-A4QL-01 11 116707074 116707074 C T APOA1 Missense_Mutation p.R85H 0.28 tolerated(0.09) benign(0.021) TCGA-BR-A4QL-01 11 116719913 116719913 G A SIK3 Missense_Mutation p.R1142C 0.33 deleterious_low_confidence(0) possibly_damaging(0.656) TCGA-BR-A4QL-01 11 116745890 116745890 C A SIK3 Missense_Mutation p.G413C 0.40 deleterious_low_confidence(0) probably_damaging(1) TCGA-BR-A4QL-01 11 116746643 116746643 C T SIK3 Missense_Mutation p.R335H 0.40 deleterious(0.03) benign(0.006) TCGA-BR-A4QL-01 11 117095431 117095431 G - PCSK7 Frame_Shift_Del p.H301Ifs*12 0.30 TCGA-BR-A4QL-01 11 117860269 117860269 C T IL10RA Missense_Mutation p.R101W 0.06 deleterious(0) probably_damaging(1) TCGA-BR-A4QL-01 11 118047235 118047235 A - SCN2B 5'UTR 0.47 TCGA-BR-A4QL-01 11 118130911 118130911 A G MPZL2 Missense_Mutation p.F148L 0.36 tolerated(0.31) possibly_damaging(0.577) TCGA-BR-A4QL-01 11 118365419 118365419 G A KMT2A Missense_Mutation p.R1767H 0.23 probably_damaging(0.996) TCGA-BR-A4QL-01 11 118499081 118499081 T C PHLDB1 Silent p.R514R 0.54 TCGA-BR-A4QL-01 11 118850287 118850287 C - FOXR1 Frame_Shift_Del p.P175Lfs*7 0.25 TCGA-BR-A4QL-01 11 119206681 119206681 C A RNF26 Silent p.G283G 0.07 TCGA-BR-A4QL-01 11 12247894 12247894 G A MICAL2 Missense_Mutation p.R622Q 0.41 deleterious(0.04) benign(0.114) TCGA-BR-A4QL-01 11 12247914 12247914 G A MICAL2 Missense_Mutation p.V629M 0.35 tolerated(0.18) benign(0.02) TCGA-BR-A4QL-01 11 122774667 122774667 C T C11orf63 Missense_Mutation p.R127C 0.40 deleterious(0) probably_damaging(0.997) TCGA-BR-A4QL-01 11 122775058 122775058 A - C11orf63 Frame_Shift_Del p.N259Tfs*37 0.34 TCGA-BR-A4QL-01 11 123848364 123848364 A G OR10S1 Missense_Mutation p.M12T 0.41 tolerated(0.5) benign(0.001) TCGA-BR-A4QL-01 11 124180467 124180467 A G OR8D1 Silent p.L66L 0.29 TCGA-BR-A4QL-01 11 124744032 124744032 C T ROBO3 Silent p.S617S 0.33 TCGA-BR-A4QL-01 11 124748587 124748587 C A ROBO3 Missense_Mutation p.S1143Y 0.49 deleterious(0) probably_damaging(0.998) TCGA-BR-A4QL-01 11 1251778 1251780 ACA - MUC5B In_Frame_Del p.N474del 0.28 TCGA-BR-A4QL-01 11 126136150 126136150 C - SRPR Frame_Shift_Del p.Q289Sfs*36 0.28 TCGA-BR-A4QL-01 11 1278846 1278846 C T MUC5B Silent p.D5452D 0.45 TCGA-BR-A4QL-01 11 130278465 130278465 C T ADAMTS8 Missense_Mutation p.G665S 0.27 deleterious(0) probably_damaging(1) TCGA-BR-A4QL-01 11 133938946 133938946 C T JAM3 5'UTR 0.27 TCGA-BR-A4QL-01 11 134048586 134048586 G - NCAPD3 Frame_Shift_Del p.Q909Rfs*10 0.26 TCGA-BR-A4QL-01 11 17531251 17531251 G - USH1C Frame_Shift_Del p.K556Rfs*8 0.31 TCGA-BR-A4QL-01 11 17554929 17554929 C T USH1C Intron 0.19 TCGA-BR-A4QL-01 11 18105214 18105214 T - SAAL1 Frame_Shift_Del p.K369Nfs*18 0.36 TCGA-BR-A4QL-01 11 18750437 18750437 C A PTPN5 3'UTR 0.32 TCGA-BR-A4QL-01 11 18955440 18955440 C T MRGPRX1 Missense_Mutation p.A298T 0.32 tolerated(1) benign(0) TCGA-BR-A4QL-01 11 19256596 19256596 C T E2F8 Missense_Mutation p.R154H 0.23 deleterious(0) probably_damaging(1) TCGA-BR-A4QL-01 11 19955389 19955389 A - NAV2 Frame_Shift_Del p.K558Sfs*35 0.34 TCGA-BR-A4QL-01 11 20104605 20104605 C T NAV2 Missense_Mutation p.A1852V 0.42 deleterious(0.01) probably_damaging(0.995) TCGA-BR-A4QL-01 11 20139929 20139929 G A NAV2 3'UTR 0.38 TCGA-BR-A4QL-01 11 22272355 22272355 A T ANO5 Missense_Mutation p.D361V 0.44 tolerated(0.09) possibly_damaging(0.649) TCGA-BR-A4QL-01 11 2356954 2356954 G A CD81-AS1 Intron 0.45 TCGA-BR-A4QL-01 11 27680000 27680000 G A BDNF Missense_Mutation p.R120W 0.44 deleterious(0.01) probably_damaging(0.988) TCGA-BR-A4QL-01 11 3050730 3050730 C T CARS Intron 0.40 TCGA-BR-A4QL-01 11 3125509 3125509 G A OSBPL5 Silent p.R386R 0.42 TCGA-BR-A4QL-01 11 32953667 32953667 C T QSER1 Missense_Mutation p.S159F 0.38 deleterious(0) benign(0.051) TCGA-BR-A4QL-01 11 32990615 32990615 A - QSER1 Frame_Shift_Del p.I1584* 0.27 TCGA-BR-A4QL-01 11 32997895 32997895 A - QSER1 Frame_Shift_Del p.N1697Mfs*4 0.36 TCGA-BR-A4QL-01 11 34904191 34904191 A - APIP 3'UTR 0.29 TCGA-BR-A4QL-01 11 36669606 36669606 C T C11orf74 Silent p.S133S 0.39 TCGA-BR-A4QL-01 11 406484 406484 G A SIGIRR Nonsense_Mutation p.Q312* 0.12 TCGA-BR-A4QL-01 11 4148290 4148290 G A RRM1 Missense_Mutation p.R499H 0.31 deleterious_low_confidence(0) probably_damaging(0.928) TCGA-BR-A4QL-01 11 43427343 43427343 G A TTC17 Missense_Mutation p.E535K 0.32 tolerated(0.72) benign(0.004) TCGA-BR-A4QL-01 11 43511893 43511893 G A TTC17 Silent p.A1045A 0.37 TCGA-BR-A4QL-01 11 4406852 4406852 C T TRIM21 Missense_Mutation p.R364H 0.43 tolerated(0.11) possibly_damaging(0.491) TCGA-BR-A4QL-01 11 46419316 46419316 G A AMBRA1 Missense_Mutation p.T1104M 0.31 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BR-A4QL-01 11 46804910 46804910 T C CKAP5 Silent p.S721S 0.34 TCGA-BR-A4QL-01 11 46819663 46819663 C T CKAP5 Silent p.L381L 0.35 TCGA-BR-A4QL-01 11 4703475 4703475 A - OR51E2 Frame_Shift_Del p.F156Sfs*6 0.25 TCGA-BR-A4QL-01 11 47312287 47312287 G A MADD Missense_Mutation p.R1094Q 0.39 tolerated(0.55) benign(0.059) TCGA-BR-A4QL-01 11 47504307 47504307 G A CELF1 Silent p.S235S 0.44 TCGA-BR-A4QL-01 11 47612294 47612294 C T C1QTNF4 Silent p.P23P 0.40 TCGA-BR-A4QL-01 11 5153679 5153679 A - OR52A5 Frame_Shift_Del p.L65Wfs*20 0.31 TCGA-BR-A4QL-01 11 55339828 55339828 A G OR4C16 Missense_Mutation p.I75M 0.39 tolerated(0.12) benign(0.094) TCGA-BR-A4QL-01 11 5566416 5566416 T C OR52H1 Missense_Mutation p.H113R 0.28 deleterious(0.02) probably_damaging(0.998) TCGA-BR-A4QL-01 11 558069 558069 G - C11orf35 Intron 0.25 TCGA-BR-A4QL-01 11 56058538 56058538 T C OR8H1 Translation_Start_Site p.M1? 0.30 deleterious(0) probably_damaging(0.995) TCGA-BR-A4QL-01 11 56128015 56128015 C T OR8J1 Missense_Mutation p.A98V 0.35 deleterious(0.03) benign(0.02) TCGA-BR-A4QL-01 11 56128086 56128086 C T OR8J1 Missense_Mutation p.R122C 0.33 deleterious(0.01) probably_damaging(0.988) TCGA-BR-A4QL-01 11 57947085 57947085 G A OR9Q1 Missense_Mutation p.A57T 0.09 tolerated(1) benign(0) TCGA-BR-A4QL-01 11 58207126 58207128 AGA - OR5B12 In_Frame_Del p.F166del 0.51 TCGA-BR-A4QL-01 11 5905781 5905781 T C OR52E4 Missense_Mutation p.F87L 0.43 deleterious(0.01) benign(0.033) TCGA-BR-A4QL-01 11 60183894 60183894 C T MS4A14 Missense_Mutation p.R518W 0.40 tolerated(0.11) benign(0.003) TCGA-BR-A4QL-01 11 60197139 60197139 G A MS4A5 5'UTR 0.32 TCGA-BR-A4QL-01 11 61135253 61135253 C T TMEM138 Intron 0.33 TCGA-BR-A4QL-01 11 62490153 62490153 G A HNRNPUL2 Nonsense_Mutation p.R339* 0.39 TCGA-BR-A4QL-01 11 62519825 62519825 G A ZBTB3 Missense_Mutation p.R488W 0.37 deleterious(0) probably_damaging(1) TCGA-BR-A4QL-01 11 6261451 6261451 C T CNGA4 Missense_Mutation p.R143C 0.34 deleterious(0) probably_damaging(1) TCGA-BR-A4QL-01 11 62649529 62649529 A - SLC3A2 Frame_Shift_Del p.K301Rfs*31 0.29 TCGA-BR-A4QL-01 11 63990891 63990891 G A FERMT3 Missense_Mutation p.R644Q 0.28 deleterious(0) probably_damaging(0.994) TCGA-BR-A4QL-01 11 64112079 64112079 C T CCDC88B Missense_Mutation p.T689M 0.33 tolerated(0.28) benign(0.001) TCGA-BR-A4QL-01 11 6416782 6416782 C T APBB1 Silent p.L703L 0.40 TCGA-BR-A4QL-01 11 64375286 64375286 G - NRXN2 Frame_Shift_Del p.T1508Rfs*58 0.57 TCGA-BR-A4QL-01 11 64390500 64390500 G A NRXN2 Missense_Mutation p.R1300W 0.23 tolerated(0.07) probably_damaging(0.997) TCGA-BR-A4QL-01 11 64573118 64573118 C - MEN1 Frame_Shift_Del p.E397Sfs*53 0.24 TCGA-BR-A4QL-01 11 64597667 64597667 G A CDC42BPG Silent p.N1122N 0.33 TCGA-BR-A4QL-01 11 64812092 64812092 A G SAC3D1 Missense_Mutation p.T324A 0.06 tolerated(0.8) benign(0.001) TCGA-BR-A4QL-01 11 64813264 64813264 G A NAALADL1 Intron 0.36 TCGA-BR-A4QL-01 11 64897648 64897648 C T SYVN1 Splice_Site p.X412_splice 0.39 TCGA-BR-A4QL-01 11 64981481 64981481 C - CAPN1 3'Flank 0.38 TCGA-BR-A4QL-01 11 65272702 65272702 T C MALAT1 RNA 0.36 TCGA-BR-A4QL-01 11 65350743 65350743 G A EHBP1L1 Missense_Mutation p.R867H 0.38 deleterious(0.05) benign(0) TCGA-BR-A4QL-01 11 65417119 65417119 T C SIPA1 Silent p.A871A 0.35 TCGA-BR-A4QL-01 11 65779667 65779667 C T CST6 Missense_Mutation p.A51V 0.33 tolerated(0.21) benign(0.106) TCGA-BR-A4QL-01 11 6592278 6592278 C T DNHD1 Silent p.G4512G 0.24 TCGA-BR-A4QL-01 11 66084119 66084119 G A CD248 Missense_Mutation p.P127L 0.29 tolerated(0.19) benign(0.328) TCGA-BR-A4QL-01 11 6623374 6623374 G - RRP8 Frame_Shift_Del p.S58Afs*4 0.27 TCGA-BR-A4QL-01 11 6629392 6629392 C - ILK Frame_Shift_Del p.L71Cfs*26 0.31 TCGA-BR-A4QL-01 11 66458926 66458926 G A SPTBN2 Silent p.A1798A 0.62 TCGA-BR-A4QL-01 11 6653519 6653519 A G DCHS1 Missense_Mutation p.V1075A 0.43 tolerated(0.22) benign(0.101) TCGA-BR-A4QL-01 11 66639172 66639172 T C PC Missense_Mutation p.I103V 0.50 tolerated(0.17) benign(0.252) TCGA-BR-A4QL-01 11 66838982 66838982 C T RHOD Missense_Mutation p.A181V 0.26 deleterious(0.03) possibly_damaging(0.527) TCGA-BR-A4QL-01 11 67225916 67225916 G A CABP4 Silent p.P242P 0.45 TCGA-BR-A4QL-01 11 67400555 67400555 T C TBX10 Missense_Mutation p.H190R 0.36 deleterious(0) probably_damaging(0.982) TCGA-BR-A4QL-01 11 67402373 67402373 G - TBX10 Frame_Shift_Del p.F98Sfs*3 0.36 TCGA-BR-A4QL-01 11 67934466 67934466 T C SUV420H1 Missense_Mutation p.Q386R 0.47 tolerated(0.06) possibly_damaging(0.696) TCGA-BR-A4QL-01 11 68153968 68153968 G A LRP5 Silent p.A400A 0.35 TCGA-BR-A4QL-01 11 68204455 68204455 G A LRP5 Missense_Mutation p.E1367K 0.37 deleterious(0.04) probably_damaging(0.924) TCGA-BR-A4QL-01 11 68506209 68506209 C T MTL5 Silent p.S292S 0.31 TCGA-BR-A4QL-01 11 70200480 70200480 C T PPFIA1 Missense_Mutation p.P746L 0.25 deleterious(0.03) possibly_damaging(0.883) TCGA-BR-A4QL-01 11 71277026 71277026 G - KRTAP5-10 Frame_Shift_Del p.G133Afs*84 0.26 TCGA-BR-A4QL-01 11 71277269 71277269 C T KRTAP5-10 3'UTR 0.36 TCGA-BR-A4QL-01 11 72396612 72396612 C - ARAP1 3'UTR 0.28 TCGA-BR-A4QL-01 11 72423533 72423533 G A ARAP1 Silent p.D276D 0.42 TCGA-BR-A4QL-01 11 72423617 72423617 C - ARAP1 Intron 0.31 TCGA-BR-A4QL-01 11 726965 726965 G - EPS8L2 Frame_Shift_Del p.E713Rfs*114 0.29 TCGA-BR-A4QL-01 11 72946018 72946018 C T P2RY2 Missense_Mutation p.R272C 0.31 deleterious(0) probably_damaging(0.99) TCGA-BR-A4QL-01 11 73008366 73008366 C T P2RY6 Missense_Mutation p.T268M 0.36 tolerated(0.08) benign(0.008) TCGA-BR-A4QL-01 11 7334764 7334764 C T SYT9 Silent p.D212D 0.40 TCGA-BR-A4QL-01 11 73681282 73681282 G A DNAJB13 3'UTR 0.45 TCGA-BR-A4QL-01 11 73950295 73950295 C T PPME1 Silent p.D276D 0.24 TCGA-BR-A4QL-01 11 74331113 74331113 T - POLD3 Frame_Shift_Del p.F239Lfs*6 0.17 TCGA-BR-A4QL-01 11 74638466 74638466 G A XRRA1 Silent p.Y156Y 0.34 TCGA-BR-A4QL-01 11 74994515 74994515 A G ARRB1 Missense_Mutation p.L57P 0.30 deleterious(0) probably_damaging(1) TCGA-BR-A4QL-01 11 75298331 75298331 C A MAP6 Missense_Mutation p.G739C 0.08 deleterious_low_confidence(0) benign(0.299) TCGA-BR-A4QL-01 11 75694431 75694433 AAA - UVRAG In_Frame_Del p.K236del 0.39 TCGA-BR-A4QL-01 11 76814175 76814175 G A OMP Missense_Mutation p.R97H 0.35 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-BR-A4QL-01 11 78368952 78368952 A - TENM4 3'UTR 0.37 TCGA-BR-A4QL-01 11 78368989 78368989 T A TENM4 3'UTR 0.34 TCGA-BR-A4QL-01 11 86209065 86209065 G A ME3 Silent p.C215C 0.39 TCGA-BR-A4QL-01 11 88068128 88068128 A G CTSC Missense_Mutation p.Y99H 0.31 tolerated(0.12) benign(0.281) TCGA-BR-A4QL-01 11 88583098 88583098 G A GRM5 Missense_Mutation p.A296V 0.31 tolerated(1) benign(0.004) TCGA-BR-A4QL-01 11 92507279 92507279 C T FAT3 Missense_Mutation p.A1423V 0.29 benign(0.102) TCGA-BR-A4QL-01 11 92533807 92533807 G A FAT3 Missense_Mutation p.R2543Q 0.33 benign(0.107) TCGA-BR-A4QL-01 11 9308018 9308018 A - TMEM41B Frame_Shift_Del p.F230Lfs*6 0.36 TCGA-BR-A4QL-01 11 94278208 94278208 C T FUT4 Silent p.S303S 0.30 TCGA-BR-A4QL-01 11 95504672 95504672 T - FAM76B 3'UTR 0.45 TCGA-BR-A4QL-01 12 101736357 101736357 C T UTP20 Missense_Mutation p.T1412M 0.48 tolerated(0.09) benign(0.27) TCGA-BR-A4QL-01 12 104139055 104139055 G T STAB2 Missense_Mutation p.V2046F 0.36 deleterious(0.01) benign(0.413) TCGA-BR-A4QL-01 12 106461103 106461103 G A NUAK1 Missense_Mutation p.S488L 0.31 deleterious(0.02) probably_damaging(0.995) TCGA-BR-A4QL-01 12 107237716 107237716 C T RIC8B Silent p.L384L 0.33 TCGA-BR-A4QL-01 12 108910878 108910878 G A FICD Silent p.P43P 0.39 TCGA-BR-A4QL-01 12 109839056 109839056 G A MYO1H Silent p.Q227Q 0.39 TCGA-BR-A4QL-01 12 11035170 11035172 TTG - PRH1 In_Frame_Del p.Q76del 0.21 TCGA-BR-A4QL-01 12 11083383 11083385 CAA - PRH2 In_Frame_Del p.Q76del 0.15 TCGA-BR-A4QL-01 12 111908405 111908405 G T ATXN2 Missense_Mutation p.P1047Q 0.34 probably_damaging(0.961) TCGA-BR-A4QL-01 12 112369427 112369427 A - TMEM116 Frame_Shift_Del p.*338E 0.37 TCGA-BR-A4QL-01 12 113328777 113328777 G A RPH3A Missense_Mutation p.A582T 0.41 deleterious(0.01) benign(0.273) TCGA-BR-A4QL-01 12 113515236 113515236 G A DTX1 Missense_Mutation p.M89I 0.36 tolerated(0.14) benign(0.002) TCGA-BR-A4QL-01 12 113601049 113601049 G A DDX54 Missense_Mutation p.R657W 0.50 deleterious(0) probably_damaging(0.924) TCGA-BR-A4QL-01 12 113603823 113603823 C A DDX54 Missense_Mutation p.D477Y 0.24 deleterious(0) possibly_damaging(0.885) TCGA-BR-A4QL-01 12 113645772 113645772 G A IQCD Missense_Mutation p.T67I 0.38 deleterious(0) probably_damaging(0.992) TCGA-BR-A4QL-01 12 117013778 117013778 C T MAP1LC3B2 Missense_Mutation p.R11C 0.51 deleterious(0.05) benign(0.015) TCGA-BR-A4QL-01 12 117672561 117672561 C T NOS1 Missense_Mutation p.R1049Q 0.41 deleterious(0) probably_damaging(0.991) TCGA-BR-A4QL-01 12 118198971 118198971 C T KSR2 Silent p.P277P 0.40 TCGA-BR-A4QL-01 12 119916943 119916943 C T CCDC60 Missense_Mutation p.T129I 0.40 tolerated(0.95) benign(0.001) TCGA-BR-A4QL-01 12 120576636 120576636 C T GCN1L1 Missense_Mutation p.V2007M 0.31 probably_damaging(0.994) TCGA-BR-A4QL-01 12 121229361 121229361 C A SPPL3 Splice_Site p.X34_splice 0.48 TCGA-BR-A4QL-01 12 121768530 121768530 A G ANAPC5 Intron 0.59 TCGA-BR-A4QL-01 12 121868370 121868370 C T KDM2B Intron 0.33 TCGA-BR-A4QL-01 12 121932375 121932375 G A KDM2B Intron 0.41 TCGA-BR-A4QL-01 12 122295334 122295334 G A HPD Missense_Mutation p.T33M 0.34 deleterious(0.01) benign(0.018) TCGA-BR-A4QL-01 12 122439464 122439464 C T WDR66 Silent p.P1099P 0.45 TCGA-BR-A4QL-01 12 123200619 123200619 C T HCAR3 Silent p.R222R 0.26 TCGA-BR-A4QL-01 12 123200736 123200736 G A HCAR3 Silent p.C183C 0.43 TCGA-BR-A4QL-01 12 123334437 123334437 C T HIP1R Missense_Mutation p.R125C 0.15 deleterious(0.01) probably_damaging(0.969) TCGA-BR-A4QL-01 12 123472180 123472180 C T PITPNM2 Silent p.P1047P 0.30 TCGA-BR-A4QL-01 12 124826379 124826379 C T NCOR2 Silent p.A1726A 0.41 TCGA-BR-A4QL-01 12 130184705 130184705 G - TMEM132D Frame_Shift_Del p.T207Rfs*75 0.37 TCGA-BR-A4QL-01 12 130926898 130926898 G A RIMBP2 Silent p.G316G 0.35 TCGA-BR-A4QL-01 12 132445535 132445535 C T EP400 Missense_Mutation p.T124M 0.39 unknown(0) TCGA-BR-A4QL-01 12 133362988 133362988 C T GOLGA3 Silent p.A1020A 0.40 TCGA-BR-A4QL-01 12 13717474 13717474 G A GRIN2B Missense_Mutation p.R900C 0.36 deleterious(0) probably_damaging(0.999) TCGA-BR-A4QL-01 12 14923723 14923724 - A HIST4H4 Frame_Shift_Ins p.Y99Lfs*32 0.35 TCGA-BR-A4QL-01 12 19418767 19418767 C T PLEKHA5 Missense_Mutation p.R232C 0.30 deleterious(0) probably_damaging(0.999) TCGA-BR-A4QL-01 12 20523104 20523104 G A PDE3A Missense_Mutation p.V296M 0.39 tolerated(0.09) possibly_damaging(0.682) TCGA-BR-A4QL-01 12 2058419 2058419 C T DCP1B Missense_Mutation p.V536I 0.38 tolerated(0.05) benign(0.037) TCGA-BR-A4QL-01 12 20874789 20874789 T G SLCO1C1 Missense_Mutation p.L276R 0.32 deleterious(0) probably_damaging(0.997) TCGA-BR-A4QL-01 12 21229432 21229432 G A SLCO1B7 Silent p.T551T 0.33 TCGA-BR-A4QL-01 12 21453486 21453486 G A SLCO1A2 Missense_Mutation p.P236S 0.42 tolerated(0.08) possibly_damaging(0.728) TCGA-BR-A4QL-01 12 22408261 22408261 C A ST8SIA1 Missense_Mutation p.K148N 0.36 tolerated(0.4) benign(0.359) TCGA-BR-A4QL-01 12 22487107 22487107 C T ST8SIA1 Silent p.A20A 0.43 TCGA-BR-A4QL-01 12 25398281 25398281 C T KRAS Missense_Mutation p.G13D 0.43 deleterious(0.04) possibly_damaging(0.506) TCGA-BR-A4QL-01 12 2717706 2717706 C T CACNA1C Missense_Mutation p.T1149M 0.24 tolerated(0.13) benign(0.004) TCGA-BR-A4QL-01 12 27235392 27235392 C T C12orf71 Missense_Mutation p.D9N 0.40 tolerated(0.33) possibly_damaging(0.741) TCGA-BR-A4QL-01 12 29486714 29486714 C T FAR2 Missense_Mutation p.T512M 0.42 deleterious(0.02) benign(0.027) TCGA-BR-A4QL-01 12 29639191 29639191 C A OVCH1 Missense_Mutation p.R328I 0.51 tolerated(0.23) benign(0.063) TCGA-BR-A4QL-01 12 29659730 29659730 C T TMTC1 3'UTR 0.44 TCGA-BR-A4QL-01 12 3649780 3649780 C - PRMT8 Frame_Shift_Del p.S31Pfs*35 0.37 TCGA-BR-A4QL-01 12 39752103 39752103 G A KIF21A Silent p.Y364Y 0.36 TCGA-BR-A4QL-01 12 40704300 40704300 G A LRRK2 Missense_Mutation p.R1462H 0.10 tolerated(0.28) benign(0.001) TCGA-BR-A4QL-01 12 40740562 40740562 T C LRRK2 Silent p.R2039R 0.23 TCGA-BR-A4QL-01 12 41374776 41374776 T C CNTN1 Missense_Mutation p.W624R 0.48 deleterious(0) probably_damaging(1) TCGA-BR-A4QL-01 12 4723030 4723031 - A DYRK4 3'UTR 0.32 TCGA-BR-A4QL-01 12 48134142 48134142 G A RAPGEF3 Silent p.A756A 0.31 TCGA-BR-A4QL-01 12 49110342 49110342 C T CCNT1 Silent p.Q39Q 0.37 TCGA-BR-A4QL-01 12 49177014 49177014 G A ADCY6 Silent p.D68D 0.29 TCGA-BR-A4QL-01 12 49221650 49221650 C T CACNB3 Missense_Mutation p.R475C 0.27 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-BR-A4QL-01 12 49448408 49448408 C - KMT2D Frame_Shift_Del p.S102Afs*28 0.38 TCGA-BR-A4QL-01 12 49938099 49938099 G A KCNH3 Missense_Mutation p.A375T 0.31 deleterious(0) probably_damaging(1) TCGA-BR-A4QL-01 12 50232060 50232060 C T BCDIN3D 3'UTR 0.12 TCGA-BR-A4QL-01 12 51675194 51675194 C A BIN2 3'UTR 0.45 TCGA-BR-A4QL-01 12 52374774 52374774 G A ACVR1B Missense_Mutation p.R201H 0.30 deleterious(0) probably_damaging(0.999) TCGA-BR-A4QL-01 12 52695798 52695798 G A KRT86 Missense_Mutation p.R33H 0.49 tolerated(0.08) possibly_damaging(0.791) TCGA-BR-A4QL-01 12 52845339 52845339 G A KRT6B Missense_Mutation p.A175V 0.15 deleterious(0.01) probably_damaging(0.951) TCGA-BR-A4QL-01 12 52886449 52886449 G A KRT6A Missense_Mutation p.A175V 0.05 deleterious(0.01) probably_damaging(0.951) TCGA-BR-A4QL-01 12 53002213 53002213 C T KRT73 Missense_Mutation p.G464R 0.31 deleterious_low_confidence(0.03) benign(0.066) TCGA-BR-A4QL-01 12 53207430 53207430 C T KRT4 Missense_Mutation p.R138H 0.47 deleterious(0.01) probably_damaging(0.984) TCGA-BR-A4QL-01 12 53875972 53875972 C T MAP3K12 Missense_Mutation p.R778H 0.09 tolerated_low_confidence(0.19) possibly_damaging(0.614) TCGA-BR-A4QL-01 12 54338978 54338978 C T HOXC13 Missense_Mutation p.R311W 0.35 deleterious(0) probably_damaging(0.998) TCGA-BR-A4QL-01 12 54403386 54403386 G A HOXC8 Silent p.A106A 0.40 TCGA-BR-A4QL-01 12 54975883 54975883 G A PPP1R1A Nonsense_Mutation p.Q94* 0.47 TCGA-BR-A4QL-01 12 56347921 56347921 A G PMEL 3'UTR 0.38 TCGA-BR-A4QL-01 12 56415292 56415292 C T IKZF4 Silent p.P5P 0.27 TCGA-BR-A4QL-01 12 56481671 56481671 T C ERBB3 Missense_Mutation p.S236P 0.34 deleterious(0.03) possibly_damaging(0.468) TCGA-BR-A4QL-01 12 56487604 56487604 G T ERBB3 Missense_Mutation p.G513C 0.32 deleterious(0) probably_damaging(0.998) TCGA-BR-A4QL-01 12 56510435 56510435 T - RPL41 5'UTR 0.28 TCGA-BR-A4QL-01 12 56559113 56559113 G - SMARCC2 Frame_Shift_Del p.P1043Lfs*18 0.29 TCGA-BR-A4QL-01 12 56720737 56720737 C T PAN2 Missense_Mutation p.C309Y 0.32 deleterious(0.03) possibly_damaging(0.757) TCGA-BR-A4QL-01 12 56818901 56818903 CTT - TIMELESS In_Frame_Del p.K538del 0.29 TCGA-BR-A4QL-01 12 56962790 56962790 C T RBMS2 Silent p.L89L 0.33 TCGA-BR-A4QL-01 12 57113059 57113059 T C NACA Intron 0.21 TCGA-BR-A4QL-01 12 57351279 57351279 G T RDH16 5'UTR 0.37 TCGA-BR-A4QL-01 12 57389547 57389547 C T GPR182 Missense_Mutation p.P185L 0.30 deleterious(0) probably_damaging(0.993) TCGA-BR-A4QL-01 12 57485188 57485188 G A NAB2 Missense_Mutation p.V122I 0.33 tolerated(0.08) possibly_damaging(0.614) TCGA-BR-A4QL-01 12 57485461 57485461 G - NAB2 Frame_Shift_Del p.G214Efs*55 0.49 TCGA-BR-A4QL-01 12 57499332 57499332 G A STAT6 Missense_Mutation p.A244V 0.35 tolerated(0.32) probably_damaging(0.925) TCGA-BR-A4QL-01 12 57919830 57919830 G A MBD6 Missense_Mutation p.R360H 0.50 tolerated_low_confidence(0.18) unknown(0) TCGA-BR-A4QL-01 12 57920756 57920758 CTT - MBD6 In_Frame_Del p.L611del 0.37 TCGA-BR-A4QL-01 12 57922092 57922092 C T MBD6 Missense_Mutation p.R857W 0.35 deleterious_low_confidence(0) probably_damaging(0.963) TCGA-BR-A4QL-01 12 57927805 57927806 - G DCTN2 Frame_Shift_Ins p.D206Rfs*2 0.35 TCGA-BR-A4QL-01 12 58203443 58203443 G T AVIL Silent p.I292I 0.38 TCGA-BR-A4QL-01 12 58207051 58207051 A G AVIL Silent p.H99H 0.40 TCGA-BR-A4QL-01 12 5939605 5939605 C T ANO2 Missense_Mutation p.R275H 0.45 deleterious(0.01) probably_damaging(0.984) TCGA-BR-A4QL-01 12 63544421 63544421 C - AVPR1A Frame_Shift_Del p.V66Cfs*62 0.31 TCGA-BR-A4QL-01 12 65514287 65514287 A - WIF1 Frame_Shift_Del p.F66Lfs*22 0.26 TCGA-BR-A4QL-01 12 65762800 65762800 G A MSRB3 Missense_Mutation p.G103S 0.43 deleterious(0.01) possibly_damaging(0.891) TCGA-BR-A4QL-01 12 662743 662743 G A B4GALNT3 Missense_Mutation p.A552T 0.31 tolerated(0.92) benign(0.001) TCGA-BR-A4QL-01 12 66531700 66531700 T - TMBIM4 3'UTR 0.33 TCGA-BR-A4QL-01 12 6729439 6729439 G A LPAR5 Missense_Mutation p.R326W 0.57 deleterious(0.01) benign(0.167) TCGA-BR-A4QL-01 12 6839847 6839847 A - COPS7A Frame_Shift_Del p.T219Pfs*21 0.28 TCGA-BR-A4QL-01 12 6840179 6840179 G A COPS7A Missense_Mutation p.A268T 0.31 tolerated(0.05) benign(0.001) TCGA-BR-A4QL-01 12 69113183 69113183 A G NUP107 Silent p.K382K 0.29 TCGA-BR-A4QL-01 12 7045390 7045390 G - ATN1 Frame_Shift_Del p.A322Pfs*50 0.27 TCGA-BR-A4QL-01 12 72013181 72013181 G A ZFC3H1 Silent p.G1686G 0.43 TCGA-BR-A4QL-01 12 7242010 7242010 G - C1R Frame_Shift_Del p.P215Lfs*100 0.35 TCGA-BR-A4QL-01 12 72425063 72425063 T C TPH2 Missense_Mutation p.V397A 0.46 deleterious(0.04) benign(0.183) TCGA-BR-A4QL-01 12 73014965 73014965 T A TRHDE Silent p.V804V 0.21 TCGA-BR-A4QL-01 12 7531681 7531681 G A CD163L1 Missense_Mutation p.S755L 0.33 tolerated(0.7) possibly_damaging(0.608) TCGA-BR-A4QL-01 12 8083109 8083109 T G SLC2A3 Missense_Mutation p.I214L 0.48 tolerated(0.12) possibly_damaging(0.855) TCGA-BR-A4QL-01 12 81661753 81661753 C T PPFIA2 Missense_Mutation p.D1142N 0.50 deleterious(0) possibly_damaging(0.483) TCGA-BR-A4QL-01 12 8391338 8391338 T C RP11-266K4.9 RNA 0.23 TCGA-BR-A4QL-01 12 85674140 85674140 C T ALX1 Missense_Mutation p.T34M 0.36 deleterious_low_confidence(0) possibly_damaging(0.65) TCGA-BR-A4QL-01 12 8666221 8666221 T C CLEC4D 5'UTR 0.41 TCGA-BR-A4QL-01 12 8673967 8673967 T C CLEC4D 3'UTR 0.33 TCGA-BR-A4QL-01 12 9089850 9089850 C T PHC1 Silent p.R852R 0.27 TCGA-BR-A4QL-01 12 91497971 91497971 G A LUM Missense_Mutation p.R330C 0.33 deleterious(0.01) possibly_damaging(0.714) TCGA-BR-A4QL-01 12 91502682 91502682 A - LUM Frame_Shift_Del p.L27Yfs*30 0.19 TCGA-BR-A4QL-01 12 93206754 93206754 A G EEA1 Splice_Site p.X681_splice 0.37 TCGA-BR-A4QL-01 12 93213103 93213103 T - EEA1 Frame_Shift_Del p.N570Tfs*8 0.34 TCGA-BR-A4QL-01 12 9345170 9345170 C T PZP Missense_Mutation p.A474T 0.09 tolerated(0.09) probably_damaging(0.988) TCGA-BR-A4QL-01 12 94620983 94620984 - G PLXNC1 Frame_Shift_Ins p.N653Efs*13 0.23 TCGA-BR-A4QL-01 12 96641143 96641143 C T ELK3 Silent p.S211S 0.43 TCGA-BR-A4QL-01 12 9847461 9847461 A G CLEC2D 3'UTR 0.33 TCGA-BR-A4QL-01 12 98921672 98921672 A - TMPO Frame_Shift_Del p.T99Lfs*12 0.35 TCGA-BR-A4QL-01 13 108518676 108518676 T C FAM155A Missense_Mutation p.Q90R 0.56 tolerated_low_confidence(0.45) benign(0.001) TCGA-BR-A4QL-01 13 108861668 108861668 G T LIG4 Missense_Mutation p.T650N 0.31 deleterious(0) benign(0.002) TCGA-BR-A4QL-01 13 110408645 110408645 A G IRS2 3'UTR 0.29 TCGA-BR-A4QL-01 13 111980580 111980580 C T TEX29 Nonsense_Mutation p.R37* 0.38 TCGA-BR-A4QL-01 13 113052428 113052428 G T SPACA7 Missense_Mutation p.A73S 0.05 tolerated(0.31) possibly_damaging(0.828) TCGA-BR-A4QL-01 13 114523822 114523822 G A GAS6 3'UTR 0.48 TCGA-BR-A4QL-01 13 114535847 114535847 G A GAS6 Intron 0.62 TCGA-BR-A4QL-01 13 20235838 20235838 G A MPHOSPH8 Missense_Mutation p.D598N 0.36 deleterious(0.04) probably_damaging(0.995) TCGA-BR-A4QL-01 13 20657094 20657094 A - ZMYM2 Frame_Shift_Del p.N1250Ifs*3 0.36 TCGA-BR-A4QL-01 13 23905080 23905080 G T SACS Missense_Mutation p.S4312Y 0.36 possibly_damaging(0.726) TCGA-BR-A4QL-01 13 24892996 24892996 G A C1QTNF9 Silent p.T69T 0.33 TCGA-BR-A4QL-01 13 25030482 25030482 G A PARP4 Silent p.S853S 0.26 TCGA-BR-A4QL-01 13 25745243 25745243 C T AMER2 Missense_Mutation p.R172H 0.10 deleterious(0) probably_damaging(0.998) TCGA-BR-A4QL-01 13 26117431 26117431 T C ATP8A2 Missense_Mutation p.L261P 0.34 tolerated(1) benign(0) TCGA-BR-A4QL-01 13 26153014 26153014 A C ATP8A2 Missense_Mutation p.H615P 0.30 deleterious(0) probably_damaging(0.936) TCGA-BR-A4QL-01 13 27332975 27332975 C T GPR12 Silent p.S330S 0.37 TCGA-BR-A4QL-01 13 27645266 27645266 T C USP12 Missense_Mutation p.Y318C 0.41 deleterious(0) probably_damaging(0.981) TCGA-BR-A4QL-01 13 29292078 29292078 T C SLC46A3 Missense_Mutation p.T20A 0.38 tolerated(0.17) benign(0.004) TCGA-BR-A4QL-01 13 36888472 36888472 G A SPG20 Missense_Mutation p.R459W 0.30 deleterious(0) probably_damaging(0.981) TCGA-BR-A4QL-01 13 37427804 37427804 A C SMAD9 Missense_Mutation p.L338V 0.27 deleterious(0) probably_damaging(1) TCGA-BR-A4QL-01 13 38171373 38171373 A T POSTN Missense_Mutation p.Y56N 0.36 deleterious(0) probably_damaging(0.998) TCGA-BR-A4QL-01 13 39586971 39586971 G A PROSER1 Silent p.F806F 0.07 TCGA-BR-A4QL-01 13 40273702 40273702 A - COG6 Frame_Shift_Del p.I413Yfs*6 0.28 TCGA-BR-A4QL-01 13 41834765 41834765 C T MTRF1 Silent p.L93L 0.33 TCGA-BR-A4QL-01 13 41941577 41941577 T - NAA16 Frame_Shift_Del p.F516Lfs*3 0.28 TCGA-BR-A4QL-01 13 43174915 43174915 C T TNFSF11 Missense_Mutation p.H139Y 0.35 tolerated(0.98) benign(0.001) TCGA-BR-A4QL-01 13 45563529 45563529 G A NUFIP1 Missense_Mutation p.H15Y 0.31 tolerated_low_confidence(0.36) benign(0) TCGA-BR-A4QL-01 13 46358084 46358084 G A SIAH3 Missense_Mutation p.R82C 0.47 tolerated_low_confidence(0.33) benign(0) TCGA-BR-A4QL-01 13 46917563 46917563 G A KIAA0226L Missense_Mutation p.A649V 0.33 deleterious(0) probably_damaging(0.941) TCGA-BR-A4QL-01 13 47469818 47469818 T - HTR2A Frame_Shift_Del p.N75Tfs*6 0.31 TCGA-BR-A4QL-01 13 49085916 49085916 C T RCBTB2 Missense_Mutation p.R258H 0.35 tolerated(0.58) possibly_damaging(0.782) TCGA-BR-A4QL-01 13 49089392 49089392 T - RCBTB2 Frame_Shift_Del p.I100* 0.32 TCGA-BR-A4QL-01 13 49781277 49781277 C T FNDC3A Missense_Mutation p.R1115C 0.33 deleterious(0) possibly_damaging(0.551) TCGA-BR-A4QL-01 13 49933960 49933960 T - CAB39L Frame_Shift_Del p.D96Mfs*2 0.27 TCGA-BR-A4QL-01 13 50140831 50140831 T - RCBTB1 Frame_Shift_Del p.K67Sfs*2 0.21 TCGA-BR-A4QL-01 13 50296165 50296165 G A KPNA3 Missense_Mutation p.R218W 0.35 deleterious(0) probably_damaging(0.991) TCGA-BR-A4QL-01 13 52439720 52439720 T C CCDC70 Missense_Mutation p.M69T 0.35 tolerated(0.05) benign(0.368) TCGA-BR-A4QL-01 13 52513215 52513215 C T ATP7B Missense_Mutation p.R1224Q 0.37 deleterious(0.04) probably_damaging(0.959) TCGA-BR-A4QL-01 13 52593050 52593050 T - ALG11 Frame_Shift_Del p.Y18Ifs*35 0.32 TCGA-BR-A4QL-01 13 52742420 52742420 C T MRPS31P5 RNA 0.49 TCGA-BR-A4QL-01 13 53421516 53421516 G A PCDH8 Silent p.P352P 0.74 TCGA-BR-A4QL-01 13 58207236 58207236 C T PCDH17 Missense_Mutation p.R186C 0.36 deleterious(0) probably_damaging(0.988) TCGA-BR-A4QL-01 13 58298910 58298910 G A PCDH17 Missense_Mutation p.E988K 0.48 deleterious(0.04) possibly_damaging(0.664) TCGA-BR-A4QL-01 13 75884248 75884248 A - TBC1D4 Frame_Shift_Del p.L808Pfs*32 0.27 TCGA-BR-A4QL-01 13 78475266 78475267 - A EDNRB Frame_Shift_Ins p.Y383Lfs*7 0.39 TCGA-BR-A4QL-01 13 84454612 84454612 C T SLITRK1 Missense_Mutation p.G344D 0.33 tolerated(0.34) benign(0.002) TCGA-BR-A4QL-01 13 88330138 88330138 C T SLITRK5 Missense_Mutation p.A832V 0.33 tolerated(0.06) benign(0.15) TCGA-BR-A4QL-01 13 92345484 92345484 T C GPC5 Silent p.S123S 0.39 TCGA-BR-A4QL-01 13 96293910 96293910 T - DZIP1 Frame_Shift_Del p.K79Rfs*9 0.31 TCGA-BR-A4QL-01 13 98637707 98637707 T A IPO5 Silent p.R86R 0.36 TCGA-BR-A4QL-01 13 99520227 99520227 C T DOCK9 Silent p.K1043K 0.58 TCGA-BR-A4QL-01 13 99908125 99908126 - T GPR18 Frame_Shift_Ins p.M1? 0.28 TCGA-BR-A4QL-01 14 100615484 100615484 A C DEGS2 Missense_Mutation p.S216A 0.37 deleterious(0.04) benign(0.259) TCGA-BR-A4QL-01 14 100992378 100992378 G A WDR25 Splice_Site p.X424_splice 0.55 TCGA-BR-A4QL-01 14 101347457 101347457 G A RTL1 Silent p.H1223H 0.50 TCGA-BR-A4QL-01 14 102372842 102372842 G A PPP2R5C Missense_Mutation p.R407H 0.36 deleterious(0.02) benign(0.065) TCGA-BR-A4QL-01 14 102476662 102476662 C T DYNC1H1 Missense_Mutation p.R2091W 0.38 probably_damaging(1) TCGA-BR-A4QL-01 14 102918829 102918829 G A TECPR2 Missense_Mutation p.A1169T 0.32 tolerated(0.41) benign(0.002) TCGA-BR-A4QL-01 14 103566847 103566847 C T EXOC3L4 Silent p.T97T 0.43 TCGA-BR-A4QL-01 14 103803484 103803484 A T EIF5 Missense_Mutation p.N120I 0.08 tolerated(0.06) possibly_damaging(0.508) TCGA-BR-A4QL-01 14 103934416 103934416 A G MARK3 Missense_Mutation p.K386R 0.37 tolerated(1) probably_damaging(0.993) TCGA-BR-A4QL-01 14 105054178 105054178 C T C14orf180 Silent p.R68R 0.33 TCGA-BR-A4QL-01 14 105352923 105352923 C T CEP170B Missense_Mutation p.R783W 0.20 deleterious(0) possibly_damaging(0.888) TCGA-BR-A4QL-01 14 105478046 105478046 G A CDCA4 Missense_Mutation p.T74M 0.41 deleterious(0) probably_damaging(0.969) TCGA-BR-A4QL-01 14 105518286 105518286 G A GPR132 Missense_Mutation p.T63I 0.38 deleterious(0) probably_damaging(0.999) TCGA-BR-A4QL-01 14 105612833 105612833 G A JAG2 Silent p.I866I 0.46 TCGA-BR-A4QL-01 14 105716436 105716436 C T BTBD6 Silent p.N295N 0.30 TCGA-BR-A4QL-01 14 106091693 106091693 G A IGHG4 Missense_Mutation p.P107S 0.19 tolerated(0.17) benign(0.001) TCGA-BR-A4QL-01 14 106110436 106110436 G A IGHG2 Silent p.R100R 0.11 TCGA-BR-A4QL-01 14 107199215 107199215 T G IGHV3-72 Missense_Mutation p.E25A 0.41 deleterious_low_confidence(0.01) benign(0.16) TCGA-BR-A4QL-01 14 20404217 20404217 A G OR4K1 Missense_Mutation p.H131R 0.23 tolerated(0.11) benign(0.008) TCGA-BR-A4QL-01 14 20852773 20852773 C - TEP1 Frame_Shift_Del p.I1070Sfs*37 0.25 TCGA-BR-A4QL-01 14 21462740 21462740 T - METTL17 Frame_Shift_Del p.F247Sfs*15 0.32 TCGA-BR-A4QL-01 14 21561074 21561075 GC - ZNF219 Frame_Shift_Del p.L128Tfs*22 0.34 TCGA-BR-A4QL-01 14 21896280 21896280 C T CHD8 Missense_Mutation p.R450H 0.28 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-BR-A4QL-01 14 21961062 21961062 T A TOX4 Silent p.A429A 0.40 TCGA-BR-A4QL-01 14 21992276 21992276 G - SALL2 Frame_Shift_Del p.P529Qfs*22 0.38 TCGA-BR-A4QL-01 14 22038482 22038482 G A OR10G3 Missense_Mutation p.R132C 0.31 deleterious(0.01) possibly_damaging(0.656) TCGA-BR-A4QL-01 14 22409719 22409719 C T TRAV9-2 Missense_Mutation p.T70M 0.32 tolerated(0.32) benign(0.027) TCGA-BR-A4QL-01 14 22985293 22985293 G A TRAJ27 Silent p.T15T 0.41 TCGA-BR-A4QL-01 14 24422889 24422889 G C DHRS4 5'UTR 0.74 TCGA-BR-A4QL-01 14 29237391 29237391 C T FOXG1 Silent p.R302R 0.45 TCGA-BR-A4QL-01 14 30107951 30107951 A G PRKD1 Missense_Mutation p.Y286H 0.33 tolerated(0.71) benign(0.029) TCGA-BR-A4QL-01 14 33015029 33015029 A - AKAP6 Frame_Shift_Del p.R392Efs*14 0.27 TCGA-BR-A4QL-01 14 33292703 33292703 A - AKAP6 Frame_Shift_Del p.N1896Mfs*17 0.28 TCGA-BR-A4QL-01 14 34269285 34269285 C T NPAS3 Missense_Mutation p.A591V 0.38 tolerated(0.17) probably_damaging(0.939) TCGA-BR-A4QL-01 14 35234330 35234330 G A BAZ1A Missense_Mutation p.A1149V 0.30 deleterious(0) probably_damaging(0.939) TCGA-BR-A4QL-01 14 35871169 35871169 T - NFKBIA 3'UTR 0.49 TCGA-BR-A4QL-01 14 38679518 38679518 G A SSTR1 Silent p.S308S 0.48 TCGA-BR-A4QL-01 14 39748655 39748655 C T CTAGE5 Nonsense_Mutation p.R74* 0.26 TCGA-BR-A4QL-01 14 39790150 39790150 C A CTAGE5 Missense_Mutation p.P526H 0.35 deleterious(0.01) probably_damaging(0.985) TCGA-BR-A4QL-01 14 39871611 39871611 A T FBXO33 Missense_Mutation p.I235N 0.30 deleterious(0.01) probably_damaging(0.95) TCGA-BR-A4QL-01 14 45431631 45431631 G A FAM179B Missense_Mutation p.A3T 0.43 deleterious_low_confidence(0.01) unknown(0) TCGA-BR-A4QL-01 14 45497410 45497410 A G FAM179B Missense_Mutation p.N1179S 0.13 deleterious(0) benign(0.026) TCGA-BR-A4QL-01 14 45605395 45605395 A G FANCM Missense_Mutation p.D54G 0.46 deleterious(0.05) probably_damaging(0.997) TCGA-BR-A4QL-01 14 45693275 45693275 C T MIS18BP1 Missense_Mutation p.V839I 0.26 deleterious(0.01) benign(0.041) TCGA-BR-A4QL-01 14 45711515 45711515 T C MIS18BP1 Missense_Mutation p.S289G 0.06 tolerated(0.08) benign(0.036) TCGA-BR-A4QL-01 14 50272836 50272836 G - NEMF Frame_Shift_Del p.P587Hfs*4 0.26 TCGA-BR-A4QL-01 14 51089952 51089952 A - ATL1 Frame_Shift_Del p.M371Wfs*29 0.40 TCGA-BR-A4QL-01 14 52178272 52178272 G A FRMD6 Silent p.S246S 0.36 TCGA-BR-A4QL-01 14 52734481 52734481 G A PTGDR 5'UTR 0.26 TCGA-BR-A4QL-01 14 53360082 53360082 T - FERMT2 Frame_Shift_Del p.K152Rfs*4 0.38 TCGA-BR-A4QL-01 14 56645119 56645119 G A PELI2 Silent p.R48R 0.43 TCGA-BR-A4QL-01 14 57268921 57268921 G - OTX2 Frame_Shift_Del p.S143Lfs*43 0.31 TCGA-BR-A4QL-01 14 59113964 59113964 A T DACT1 3'Flank 0.50 TCGA-BR-A4QL-01 14 59789729 59789729 C T DAAM1 Missense_Mutation p.A187V 0.39 deleterious(0) unknown(0) TCGA-BR-A4QL-01 14 59835592 59835592 T - DAAM1 3'UTR 0.32 TCGA-BR-A4QL-01 14 59930994 59930994 G A GPR135 Silent p.Y317Y 0.42 TCGA-BR-A4QL-01 14 64855117 64855117 C T MTHFD1 5'UTR 0.33 TCGA-BR-A4QL-01 14 65207900 65207900 C - PLEKHG3 Frame_Shift_Del p.P501Qfs*19 0.27 TCGA-BR-A4QL-01 14 67525631 67525631 T - GPHN Intron 0.43 TCGA-BR-A4QL-01 14 68117651 68117651 C T VTI1B 3'UTR 0.34 TCGA-BR-A4QL-01 14 69521952 69521952 C A DCAF5 Missense_Mutation p.G484V 0.50 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-BR-A4QL-01 14 69800300 69800300 G - GALNT16 Frame_Shift_Del p.G319Efs*83 0.36 TCGA-BR-A4QL-01 14 71199761 71199761 G A MAP3K9 Silent p.C789C 0.39 TCGA-BR-A4QL-01 14 71444403 71444403 G T PCNX Missense_Mutation p.S450I 0.10 deleterious(0.04) possibly_damaging(0.486) TCGA-BR-A4QL-01 14 72090950 72090951 - G SIPA1L1 Frame_Shift_Ins 0.30 TCGA-BR-A4QL-01 14 73958888 73958888 C T HEATR4 Intron 0.40 TCGA-BR-A4QL-01 14 73989186 73989186 C T HEATR4 Missense_Mutation p.R224Q 0.36 tolerated(0.62) benign(0.001) TCGA-BR-A4QL-01 14 74086558 74086558 A G ACOT6 3'UTR 0.29 TCGA-BR-A4QL-01 14 74205773 74205773 G - ELMSAN1 Frame_Shift_Del p.N314Tfs*4 0.23 TCGA-BR-A4QL-01 14 74967607 74967607 G - LTBP2 Frame_Shift_Del p.H1816Tfs*32 0.35 TCGA-BR-A4QL-01 14 74975410 74975410 C A LTBP2 Missense_Mutation p.E1183D 0.42 tolerated(0.39) possibly_damaging(0.796) TCGA-BR-A4QL-01 14 74995223 74995223 C T LTBP2 Silent p.T777T 0.41 TCGA-BR-A4QL-01 14 76620670 76620670 T - GPATCH2L Intron 0.31 TCGA-BR-A4QL-01 14 77492225 77492225 C T IRF2BPL Silent p.A637A 0.35 TCGA-BR-A4QL-01 14 77935587 77935587 T - AHSA1 Frame_Shift_Del p.*339R 0.29 TCGA-BR-A4QL-01 14 78174328 78174328 G A ALKBH1 Missense_Mutation p.A7V 0.45 tolerated_low_confidence(0.13) benign(0.008) TCGA-BR-A4QL-01 14 80328229 80328229 G A NRXN3 Silent p.T1036T 0.40 TCGA-BR-A4QL-01 14 81610526 81610526 G A TSHR Silent p.G708G 0.40 TCGA-BR-A4QL-01 14 89878419 89878419 G A FOXN3 Silent p.R134R 0.34 TCGA-BR-A4QL-01 14 91142998 91142998 G A TTC7B Missense_Mutation p.R341W 0.34 deleterious(0) benign(0.022) TCGA-BR-A4QL-01 14 91779774 91779774 G A CCDC88C Missense_Mutation p.R796C 0.20 deleterious(0) possibly_damaging(0.462) TCGA-BR-A4QL-01 14 92347755 92347755 G A FBLN5 Silent p.N290N 0.32 TCGA-BR-A4QL-01 14 92959982 92959982 G A SLC24A4 3'UTR 0.34 TCGA-BR-A4QL-01 14 94394791 94394791 C T FAM181A Missense_Mutation p.R116W 0.46 deleterious(0) probably_damaging(0.999) TCGA-BR-A4QL-01 14 94915004 94915004 G - SERPINA11 Frame_Shift_Del p.R37Gfs*42 0.31 TCGA-BR-A4QL-01 15 101586241 101586241 C T LRRK1 Missense_Mutation p.R1007W 0.33 deleterious(0.04) possibly_damaging(0.726) TCGA-BR-A4QL-01 15 101593491 101593491 A C LRRK1 Missense_Mutation p.E1307A 0.38 deleterious(0) probably_damaging(1) TCGA-BR-A4QL-01 15 20644812 20644812 A G HERC2P3 RNA 0.15 TCGA-BR-A4QL-01 15 22369050 22369050 C T OR4M2 Nonsense_Mutation p.Q159* 0.16 TCGA-BR-A4QL-01 15 22383431 22383431 G A OR4N4 3'UTR 0.11 TCGA-BR-A4QL-01 15 22709162 22709163 CT - AC116165.1 5'Flank 0.17 TCGA-BR-A4QL-01 15 23049010 23049010 G A NIPA1 Missense_Mutation p.T270M 0.39 deleterious(0.01) possibly_damaging(0.621) TCGA-BR-A4QL-01 15 25925385 25925385 G A ATP10A Missense_Mutation p.A1250V 0.29 deleterious(0.04) benign(0.009) TCGA-BR-A4QL-01 15 25958891 25958891 G A ATP10A Silent p.T758T 0.32 TCGA-BR-A4QL-01 15 27188486 27188486 G A GABRA5 Silent p.A334A 0.38 TCGA-BR-A4QL-01 15 28437159 28437159 C T HERC2 Missense_Mutation p.R2800H 0.38 probably_damaging(0.946) TCGA-BR-A4QL-01 15 31196885 31196887 CCT - FAN1 In_Frame_Del p.P8del 0.42 TCGA-BR-A4QL-01 15 33858966 33858966 C T RYR3 Missense_Mutation p.R412W 0.31 probably_damaging(0.983) TCGA-BR-A4QL-01 15 34628900 34628900 A - SLC12A6 5'UTR 0.27 TCGA-BR-A4QL-01 15 34673720 34673720 G A GOLGA8A Silent p.V568V 0.14 TCGA-BR-A4QL-01 15 37375970 37375970 A G MEIS2 Splice_Site p.X252_splice 0.32 TCGA-BR-A4QL-01 15 40590816 40590816 G A PLCB2 Missense_Mutation p.T315M 0.44 deleterious(0.05) benign(0.114) TCGA-BR-A4QL-01 15 40659533 40659533 C T DISP2 Missense_Mutation p.A407V 0.30 tolerated(0.18) benign(0.032) TCGA-BR-A4QL-01 15 40661144 40661144 G A DISP2 Missense_Mutation p.R944H 0.39 tolerated(0.2) benign(0.027) TCGA-BR-A4QL-01 15 40685709 40685709 C T KNSTRN Nonsense_Mutation p.R288* 0.34 TCGA-BR-A4QL-01 15 40750958 40750958 C - BAHD1 Frame_Shift_Del p.S101Afs*107 0.26 TCGA-BR-A4QL-01 15 41812993 41812993 G A RPAP1 Missense_Mutation p.R1131W 0.42 tolerated(0.23) possibly_damaging(0.847) TCGA-BR-A4QL-01 15 41870509 41870509 G A TYRO3 3'UTR 0.10 TCGA-BR-A4QL-01 15 42519917 42519917 A G TMEM87A Missense_Mutation p.C431R 0.28 deleterious(0) probably_damaging(1) TCGA-BR-A4QL-01 15 42734448 42734448 C T ZNF106 Missense_Mutation p.G1173R 0.44 deleterious(0.02) probably_damaging(0.95) TCGA-BR-A4QL-01 15 42743379 42743379 G A ZNF106 Missense_Mutation p.A341V 0.06 tolerated(0.89) benign(0) TCGA-BR-A4QL-01 15 43237587 43237587 C T UBR1 Silent p.E1730E 0.32 TCGA-BR-A4QL-01 15 43482524 43482524 C A CCNDBP1 Missense_Mutation p.P144T 0.39 tolerated(1) benign(0.026) TCGA-BR-A4QL-01 15 43675642 43675642 C T TUBGCP4 Silent p.D221D 0.24 TCGA-BR-A4QL-01 15 43692300 43692300 C T TUBGCP4 Missense_Mutation p.H493Y 0.35 deleterious(0.03) benign(0.308) TCGA-BR-A4QL-01 15 45007689 45007690 TA - B2M Frame_Shift_Del p.Y46Cfs*10 0.28 TCGA-BR-A4QL-01 15 45007824 45007825 - C B2M Frame_Shift_Ins p.T93Hfs*2 0.27 TCGA-BR-A4QL-01 15 45399615 45399615 G A DUOX2 Missense_Mutation p.R541W 0.38 tolerated(0.16) benign(0.025) TCGA-BR-A4QL-01 15 45404879 45404879 G T DUOX2 Silent p.A66A 0.35 TCGA-BR-A4QL-01 15 45884368 45884368 G A BLOC1S6 Missense_Mutation p.E40K 0.36 tolerated(0.07) possibly_damaging(0.506) TCGA-BR-A4QL-01 15 48431210 48431211 - T SLC24A5 Frame_Shift_Ins p.W308Lfs*19 0.30 TCGA-BR-A4QL-01 15 51503148 51503148 G A CYP19A1 Nonsense_Mutation p.R457* 0.38 TCGA-BR-A4QL-01 15 52556467 52556467 C T MYO5C Missense_Mutation p.V323I 0.30 tolerated(1) benign(0.104) TCGA-BR-A4QL-01 15 53908071 53908071 T - WDR72 Frame_Shift_Del p.M778Cfs*9 0.32 TCGA-BR-A4QL-01 15 54786877 54786877 A C UNC13C Missense_Mutation p.N1669H 0.37 deleterious_low_confidence(0) possibly_damaging(0.779) TCGA-BR-A4QL-01 15 54916051 54916051 A G UNC13C Silent p.E2086E 0.35 TCGA-BR-A4QL-01 15 56144650 56144650 G A NEDD4 Missense_Mutation p.T720M 0.33 deleterious(0) probably_damaging(0.979) TCGA-BR-A4QL-01 15 56386180 56386181 - T RFX7 Frame_Shift_Ins p.I1249Nfs*8 0.33 TCGA-BR-A4QL-01 15 59181694 59181694 T C SLTM Silent p.Q713Q 0.42 TCGA-BR-A4QL-01 15 59186129 59186129 T - SLTM Frame_Shift_Del p.E514Kfs*8 0.27 TCGA-BR-A4QL-01 15 59911278 59911280 AAG - GCNT3 In_Frame_Del p.K283del 0.44 TCGA-BR-A4QL-01 15 60741266 60741267 - T NARG2 Frame_Shift_Ins p.P634Tfs*7 0.46 TCGA-BR-A4QL-01 15 63000909 63000909 G A TLN2 Missense_Mutation p.R794Q 0.44 tolerated(0.36) benign(0.007) TCGA-BR-A4QL-01 15 63824852 63824852 G A USP3 Missense_Mutation p.R33Q 0.42 tolerated(0.2) probably_damaging(0.987) TCGA-BR-A4QL-01 15 67473668 67473668 G A SMAD3 Missense_Mutation p.A250T 0.42 deleterious(0.03) probably_damaging(0.983) TCGA-BR-A4QL-01 15 68122574 68122574 C T SKOR1 Missense_Mutation p.T721M 0.43 deleterious_low_confidence(0) possibly_damaging(0.897) TCGA-BR-A4QL-01 15 69331226 69331226 T - NOX5 Frame_Shift_Del p.H470Tfs*10 0.37 TCGA-BR-A4QL-01 15 72190580 72190580 A - MYO9A Frame_Shift_Del p.Y1422Ifs*8 0.30 TCGA-BR-A4QL-01 15 72511345 72511345 G A PKM Missense_Mutation p.R32C 0.41 tolerated(0.06) benign(0.024) TCGA-BR-A4QL-01 15 73581529 73581529 G T NEO1 Missense_Mutation p.R1231L 0.43 deleterious(0.03) probably_damaging(1) TCGA-BR-A4QL-01 15 73996677 73996677 G A CD276 Silent p.S411S 0.50 TCGA-BR-A4QL-01 15 74235272 74235272 C T LOXL1 Missense_Mutation p.R394C 0.06 deleterious(0) probably_damaging(0.996) TCGA-BR-A4QL-01 15 74367334 74367334 G T GOLGA6A Missense_Mutation p.P286T 0.18 tolerated(1) benign(0.033) TCGA-BR-A4QL-01 15 74468067 74468067 C T ISLR Missense_Mutation p.R290C 0.34 deleterious(0.04) possibly_damaging(0.828) TCGA-BR-A4QL-01 15 74627335 74627335 G A CCDC33 Missense_Mutation p.R682H 0.30 tolerated(0.12) benign(0.18) TCGA-BR-A4QL-01 15 74911553 74911553 C T CLK3 Nonsense_Mutation p.R154* 0.41 TCGA-BR-A4QL-01 15 75094779 75094779 C T CSK Silent p.D426D 0.35 TCGA-BR-A4QL-01 15 75664484 75664484 C A SIN3A Nonsense_Mutation p.E1220* 0.35 TCGA-BR-A4QL-01 15 75949393 75949393 G A SNX33 Missense_Mutation p.R521H 0.48 deleterious(0.04) probably_damaging(0.91) TCGA-BR-A4QL-01 15 78633425 78633425 G A CRABP1 Silent p.A37A 0.30 TCGA-BR-A4QL-01 15 78921324 78921324 G A CHRNB4 Silent p.D441D 0.47 TCGA-BR-A4QL-01 15 79227367 79227367 C T CTSH Missense_Mutation p.V120M 0.05 tolerated(0.2) benign(0.05) TCGA-BR-A4QL-01 15 79760622 79760622 G A KIAA1024 Missense_Mutation p.E883K 0.42 tolerated(0.13) probably_damaging(0.993) TCGA-BR-A4QL-01 15 81173411 81173411 G A KIAA1199 Nonsense_Mutation p.W184* 0.04 TCGA-BR-A4QL-01 15 81281974 81281976 CTT - MESDC2 In_Frame_Del p.K53del 0.39 TCGA-BR-A4QL-01 15 83451559 83451559 C A FSD2 Silent p.V318V 0.26 TCGA-BR-A4QL-01 15 83686736 83686736 T G BTBD1 3'UTR 0.32 TCGA-BR-A4QL-01 15 86205628 86205628 G A AKAP13 Nonsense_Mutation p.W1585* 0.38 TCGA-BR-A4QL-01 15 89169555 89169555 C T AEN Missense_Mutation p.R39W 0.32 deleterious(0) probably_damaging(0.999) TCGA-BR-A4QL-01 15 89848426 89848426 C T FANCI Missense_Mutation p.R1047C 0.37 tolerated(0.09) benign(0.303) TCGA-BR-A4QL-01 15 90169247 90169247 C T TICRR Silent p.L1853L 0.32 TCGA-BR-A4QL-01 15 90349232 90349232 G A ANPEP Missense_Mutation p.R195C 0.32 deleterious(0) possibly_damaging(0.764) TCGA-BR-A4QL-01 15 90623096 90623096 C T ZNF710 3'UTR 0.33 TCGA-BR-A4QL-01 15 90623105 90623105 G - ZNF710 3'UTR 0.48 TCGA-BR-A4QL-01 15 91185350 91185350 C T CRTC3 Missense_Mutation p.T613M 0.37 deleterious(0) possibly_damaging(0.47) TCGA-BR-A4QL-01 15 91312684 91312684 G A BLM Missense_Mutation p.R808H 0.50 deleterious(0) probably_damaging(1) TCGA-BR-A4QL-01 15 91528045 91528045 C T PRC1 Missense_Mutation p.A8T 0.36 deleterious(0.01) possibly_damaging(0.721) TCGA-BR-A4QL-01 15 94901823 94901823 A G MCTP2 Missense_Mutation p.H428R 0.38 tolerated(0.91) benign(0.001) TCGA-BR-A4QL-01 15 99500322 99500322 A G IGF1R Missense_Mutation p.N1252S 0.37 deleterious(0.05) probably_damaging(0.997) TCGA-BR-A4QL-01 16 11829888 11829888 A G TXNDC11 Silent p.S152S 0.06 TCGA-BR-A4QL-01 16 11933615 11933615 G A RSL1D1 Silent p.S361S 0.34 TCGA-BR-A4QL-01 16 1270618 1270618 G A CACNA1H Missense_Mutation p.R2229K 0.37 tolerated(0.62) benign(0.008) TCGA-BR-A4QL-01 16 1395258 1395258 G A BAIAP3 Missense_Mutation p.R685H 0.46 tolerated(0.14) benign(0.009) TCGA-BR-A4QL-01 16 1412311 1412311 C T GNPTG Silent p.H172H 0.51 TCGA-BR-A4QL-01 16 15122839 15122840 - C PDXDC1 Intron 0.16 TCGA-BR-A4QL-01 16 15224285 15224285 C T RP11-1186N24.5 RNA 0.53 TCGA-BR-A4QL-01 16 15225424 15225424 C T RP11-1186N24.5 RNA 0.21 TCGA-BR-A4QL-01 16 1561152 1561152 C A IFT140 Splice_Site p.X1395_splice 0.19 TCGA-BR-A4QL-01 16 15710928 15710928 C T KIAA0430 Missense_Mutation p.G1020S 0.42 deleterious(0) probably_damaging(1) TCGA-BR-A4QL-01 16 15847322 15847322 G A MYH11 Missense_Mutation p.P605L 0.29 possibly_damaging(0.535) TCGA-BR-A4QL-01 16 16200615 16200615 C A ABCC1 Missense_Mutation p.S919Y 0.37 deleterious(0) benign(0.27) TCGA-BR-A4QL-01 16 1841250 1841250 C T IGFALS Missense_Mutation p.S428N 0.37 deleterious(0.01) probably_damaging(0.992) TCGA-BR-A4QL-01 16 1996656 1996656 G A RPL3L Silent p.Y307Y 0.37 TCGA-BR-A4QL-01 16 20084857 20084857 C T GPR139 Missense_Mutation p.V28M 0.47 deleterious(0.01) benign(0.036) TCGA-BR-A4QL-01 16 2105425 2105425 G A TSC2 Missense_Mutation p.M168I 0.39 tolerated(0.1) probably_damaging(0.994) TCGA-BR-A4QL-01 16 2328359 2328359 G A ABCA3 Missense_Mutation p.R1550W 0.40 deleterious(0.01) possibly_damaging(0.77) TCGA-BR-A4QL-01 16 2349441 2349441 G A ABCA3 Silent p.N568N 0.06 TCGA-BR-A4QL-01 16 23647028 23647028 T - PALB2 Frame_Shift_Del p.N280Tfs*8 0.38 TCGA-BR-A4QL-01 16 23713538 23713538 G A ERN2 Silent p.L428L 0.33 TCGA-BR-A4QL-01 16 23716327 23716327 G A ERN2 Missense_Mutation p.P292L 0.37 deleterious(0.02) probably_damaging(0.992) TCGA-BR-A4QL-01 16 24192209 24192209 C T PRKCB Missense_Mutation p.T498I 0.38 deleterious(0) probably_damaging(0.99) TCGA-BR-A4QL-01 16 24582742 24582742 C T RBBP6 Missense_Mutation p.T1452M 0.33 deleterious_low_confidence(0) unknown(0) TCGA-BR-A4QL-01 16 27375156 27375156 A G IL4R 3'UTR 0.30 TCGA-BR-A4QL-01 16 27561201 27561201 A G GTF3C1 Missense_Mutation p.L4P 0.42 deleterious(0) probably_damaging(0.999) TCGA-BR-A4QL-01 16 27761168 27761168 G - KIAA0556 Frame_Shift_Del p.G964Vfs*33 0.26 TCGA-BR-A4QL-01 16 2871046 2871046 G A PRSS21 Missense_Mutation p.R214H 0.37 tolerated(0.12) benign(0.315) TCGA-BR-A4QL-01 16 28948671 28948671 C T CD19 Silent p.N426N 0.40 TCGA-BR-A4QL-01 16 28967620 28967620 C T NFATC2IP Missense_Mutation p.R270C 0.33 deleterious(0) probably_damaging(0.939) TCGA-BR-A4QL-01 16 29675364 29675365 - C SPN Frame_Shift_Ins p.Q107Pfs*39 0.29 TCGA-BR-A4QL-01 16 29755572 29755572 G A C16orf54 3'UTR 0.32 TCGA-BR-A4QL-01 16 29884960 29884960 C T SEZ6L2 Missense_Mutation p.R732H 0.44 tolerated(0.42) possibly_damaging(0.829) TCGA-BR-A4QL-01 16 29997691 29997691 C T TAOK2 Missense_Mutation p.R700C 0.44 deleterious(0) probably_damaging(0.937) TCGA-BR-A4QL-01 16 30041821 30041821 C - FAM57B Frame_Shift_Del p.V10Wfs*112 0.35 TCGA-BR-A4QL-01 16 30198155 30198155 G - CORO1A Frame_Shift_Del p.G115Afs*2 0.24 TCGA-BR-A4QL-01 16 30616334 30616334 G A ZNF689 Missense_Mutation p.R252W 0.36 deleterious(0) probably_damaging(0.996) TCGA-BR-A4QL-01 16 3065572 3065572 G - CLDN6 Frame_Shift_Del p.L151Wfs*109 0.37 TCGA-BR-A4QL-01 16 30767987 30767987 G A PHKG2 Missense_Mutation p.R293H 0.37 deleterious(0.04) benign(0.269) TCGA-BR-A4QL-01 16 30977317 30977317 C - SETD1A Frame_Shift_Del p.G708Vfs*95 0.29 TCGA-BR-A4QL-01 16 31050861 31050861 G - STX4 Splice_Site p.X236_splice 0.25 TCGA-BR-A4QL-01 16 31089180 31089180 G A ZNF646 Missense_Mutation p.R512Q 0.13 deleterious(0.02) probably_damaging(0.992) TCGA-BR-A4QL-01 16 31131804 31131804 G A KAT8 Missense_Mutation p.R144H 0.38 deleterious(0.01) possibly_damaging(0.489) TCGA-BR-A4QL-01 16 31154777 31154777 G T PRSS36 Missense_Mutation p.P329Q 0.41 tolerated(0.12) possibly_damaging(0.749) TCGA-BR-A4QL-01 16 31309156 31309156 G A ITGAM Missense_Mutation p.V531I 0.40 tolerated(0.32) benign(0.264) TCGA-BR-A4QL-01 16 314628 314628 C T ITFG3 Missense_Mutation p.R454W 0.37 tolerated(0.19) benign(0.002) TCGA-BR-A4QL-01 16 3273976 3273976 T - ZNF200 Frame_Shift_Del p.K368Nfs*37 0.32 TCGA-BR-A4QL-01 16 3613868 3613868 G A NLRC3 Missense_Mutation p.P404L 0.35 deleterious(0) probably_damaging(0.999) TCGA-BR-A4QL-01 16 3828769 3828769 G A CREBBP Missense_Mutation p.R625C 0.45 probably_damaging(1) TCGA-BR-A4QL-01 16 4432309 4432309 C T VASN Silent p.R477R 0.33 TCGA-BR-A4QL-01 16 46695735 46695735 T - VPS35 Frame_Shift_Del p.A703Lfs*2 0.17 TCGA-BR-A4QL-01 16 48585361 48585361 C T N4BP1 Missense_Mutation p.G685R 0.39 tolerated(0.29) probably_damaging(1) TCGA-BR-A4QL-01 16 4862113 4862113 G A GLYR1 Missense_Mutation p.A419V 0.43 tolerated(0.05) possibly_damaging(0.58) TCGA-BR-A4QL-01 16 49525145 49525145 C T ZNF423 3'UTR 0.32 TCGA-BR-A4QL-01 16 50707922 50707922 G A SNX20 Missense_Mutation p.R116C 0.33 deleterious(0) probably_damaging(1) TCGA-BR-A4QL-01 16 50826538 50826538 C T CYLD Nonsense_Mutation p.R758* 0.27 TCGA-BR-A4QL-01 16 53501054 53501054 C T RBL2 Missense_Mutation p.R650C 0.39 deleterious(0.03) benign(0.049) TCGA-BR-A4QL-01 16 55522591 55522591 C T MMP2 Silent p.Y323Y 0.42 TCGA-BR-A4QL-01 16 57201038 57201038 G A FAM192A Missense_Mutation p.A150V 0.42 tolerated(0.26) benign(0.003) TCGA-BR-A4QL-01 16 57935308 57935308 A G CNGB1 Missense_Mutation p.L975P 0.33 deleterious(0) probably_damaging(0.976) TCGA-BR-A4QL-01 16 67236285 67236286 - C ELMO3 Intron 0.35 TCGA-BR-A4QL-01 16 67424238 67424238 G A TPPP3 Missense_Mutation p.R124W 0.48 deleterious(0.01) probably_damaging(1) TCGA-BR-A4QL-01 16 67470747 67470747 C T HSD11B2 Silent p.Y353Y 0.37 TCGA-BR-A4QL-01 16 67670706 67670706 C T CTCF Missense_Mutation p.R651W 0.28 deleterious_low_confidence(0) benign(0.421) TCGA-BR-A4QL-01 16 67865197 67865197 G A CENPT Missense_Mutation p.R209C 0.37 deleterious(0) possibly_damaging(0.87) TCGA-BR-A4QL-01 16 67917844 67917844 C - EDC4 Intron 0.33 TCGA-BR-A4QL-01 16 68264452 68264452 G - ESRP2 Frame_Shift_Del p.P635Qfs*43 0.35 TCGA-BR-A4QL-01 16 683935 683935 G A WFIKKN1 Missense_Mutation p.D509N 0.30 tolerated(0.28) benign(0.119) TCGA-BR-A4QL-01 16 68395144 68395144 G A SMPD3 Nonsense_Mutation p.R645* 0.60 TCGA-BR-A4QL-01 16 68713830 68713830 C T CDH3 Missense_Mutation p.R274W 0.45 deleterious(0.01) probably_damaging(0.993) TCGA-BR-A4QL-01 16 68941412 68941412 C T TANGO6 Silent p.L578L 0.39 TCGA-BR-A4QL-01 16 69117396 69117396 C T TANGO6 Silent p.S1039S 0.33 TCGA-BR-A4QL-01 16 70712206 70712206 G A MTSS1L Silent p.I191I 0.37 TCGA-BR-A4QL-01 16 71570593 71570593 A - CHST4 Frame_Shift_Del p.M7* 0.33 TCGA-BR-A4QL-01 16 720697 720697 C T RHOT2 Missense_Mutation p.A188V 0.34 deleterious(0) possibly_damaging(0.826) TCGA-BR-A4QL-01 16 72141380 72141380 G A DHX38 Silent p.P914P 0.34 TCGA-BR-A4QL-01 16 72831388 72831388 C T ZFHX3 Silent p.Q1731Q 0.48 TCGA-BR-A4QL-01 16 72831391 72831392 - TGC ZFHX3 In_Frame_Ins p.Q1741dup 0.36 TCGA-BR-A4QL-01 16 7382923 7382923 A G RBFOX1 5'UTR 0.38 TCGA-BR-A4QL-01 16 75579361 75579361 C T TMEM231 Silent p.A186A 0.28 TCGA-BR-A4QL-01 16 76528929 76528929 T C CNTNAP4 Missense_Mutation p.Y662H 0.32 tolerated(0.64) benign(0.071) TCGA-BR-A4QL-01 16 77369733 77369733 G A ADAMTS18 Silent p.S593S 0.37 TCGA-BR-A4QL-01 16 784378 784378 G A NARFL Intron 0.26 TCGA-BR-A4QL-01 16 84129294 84129294 G A MBTPS1 Missense_Mutation p.H180Y 0.44 tolerated(0.31) benign(0.005) TCGA-BR-A4QL-01 16 847749 847749 C T CHTF18 Missense_Mutation p.A930V 0.44 tolerated(0.21) benign(0.118) TCGA-BR-A4QL-01 16 86544636 86544636 T C FOXF1 Missense_Mutation p.M154T 0.30 deleterious(0.02) benign(0.002) TCGA-BR-A4QL-01 16 87678038 87678038 C T JPH3 Missense_Mutation p.A186V 0.07 tolerated(0.11) benign(0.009) TCGA-BR-A4QL-01 16 89777020 89777020 G A VPS9D1 Missense_Mutation p.A411V 0.64 tolerated(0.89) benign(0.001) TCGA-BR-A4QL-01 16 89777021 89777021 C T VPS9D1 Missense_Mutation p.A411T 0.15 tolerated(0.56) benign(0.001) TCGA-BR-A4QL-01 16 9858350 9858350 G A GRIN2A Silent p.S1017S 0.39 TCGA-BR-A4QL-01 16 9943710 9943710 G T GRIN2A Missense_Mutation p.L411M 0.41 deleterious(0) probably_damaging(0.999) TCGA-BR-A4QL-01 17 10348335 10348335 C T MYH4 Silent p.A1808A 0.33 TCGA-BR-A4QL-01 17 10533718 10533718 G A MYH3 Missense_Mutation p.R1782W 0.32 deleterious(0) possibly_damaging(0.859) TCGA-BR-A4QL-01 17 10533732 10533732 C T MYH3 Missense_Mutation p.S1777N 0.28 tolerated(0.21) probably_damaging(0.982) TCGA-BR-A4QL-01 17 12011144 12011144 C T MAP2K4 Missense_Mutation p.S184L 0.33 deleterious(0) probably_damaging(1) TCGA-BR-A4QL-01 17 12656041 12656041 C - MYOCD Frame_Shift_Del p.S481Pfs*18 0.30 TCGA-BR-A4QL-01 17 1548210 1548210 G A SCARF1 Silent p.D61D 0.33 TCGA-BR-A4QL-01 17 15532407 15532407 G A TRIM16 Missense_Mutation p.P406L 0.25 deleterious(0.02) probably_damaging(0.999) TCGA-BR-A4QL-01 17 15554526 15554526 G A RP11-385D13.1 Missense_Mutation p.A133V 0.42 tolerated_low_confidence(0.3) benign(0.087) TCGA-BR-A4QL-01 17 1631420 1631420 C A WDR81 Missense_Mutation p.P1056H 0.41 tolerated(0.59) benign(0.004) TCGA-BR-A4QL-01 17 1637421 1637421 G A WDR81 Missense_Mutation p.R1697H 0.42 deleterious(0) probably_damaging(0.969) TCGA-BR-A4QL-01 17 17046886 17046886 C - MPRIP Frame_Shift_Del p.P353Qfs*30 0.27 TCGA-BR-A4QL-01 17 17250189 17250190 - C NT5M Frame_Shift_Ins p.R208Pfs*55 0.30 TCGA-BR-A4QL-01 17 17698048 17698048 C T RAI1 Missense_Mutation p.R596W 0.26 deleterious(0) probably_damaging(0.995) TCGA-BR-A4QL-01 17 18023050 18023050 C T MYO15A Silent p.Y312Y 0.33 TCGA-BR-A4QL-01 17 18180995 18180995 C T TOP3A Missense_Mutation p.A941T 0.36 tolerated(0.3) benign(0.207) TCGA-BR-A4QL-01 17 18967340 18967340 C A SNORD3B-2 RNA 0.17 TCGA-BR-A4QL-01 17 19284209 19284209 G A MAPK7 Silent p.A229A 0.46 TCGA-BR-A4QL-01 17 19314696 19314696 G A RNF112 5'UTR 0.13 TCGA-BR-A4QL-01 17 19315988 19315988 G A RNF112 Silent p.P91P 0.43 TCGA-BR-A4QL-01 17 19459098 19459098 C - SLC47A1 Intron 0.39 TCGA-BR-A4QL-01 17 19566732 19566732 A - ALDH3A2 Frame_Shift_Del p.N344Mfs*2 0.30 TCGA-BR-A4QL-01 17 21208385 21208385 T C MAP2K3 Missense_Mutation p.L240P 0.12 tolerated(0.27) possibly_damaging(0.611) TCGA-BR-A4QL-01 17 25637145 25637145 C T WSB1 Nonsense_Mutation p.R315* 0.42 TCGA-BR-A4QL-01 17 2597526 2597526 C T CLUH Silent p.A955A 0.39 TCGA-BR-A4QL-01 17 27042713 27042713 C T RAB34 Missense_Mutation p.A166T 0.26 deleterious(0) probably_damaging(0.986) TCGA-BR-A4QL-01 17 27085283 27085283 G A FAM222B 3'UTR 0.30 TCGA-BR-A4QL-01 17 27215973 27215973 C T FLOT2 Missense_Mutation p.D41N 0.35 tolerated(0.22) benign(0.033) TCGA-BR-A4QL-01 17 27233246 27233247 GA - PHF12 Frame_Shift_Del p.L990Qfs*60 0.29 TCGA-BR-A4QL-01 17 27248714 27248714 C T PHF12 Silent p.T276T 0.38 TCGA-BR-A4QL-01 17 27285070 27285070 C T SEZ6 Missense_Mutation p.V733M 0.35 tolerated(0.06) probably_damaging(0.937) TCGA-BR-A4QL-01 17 27308688 27308688 G A SEZ6 Missense_Mutation p.P142L 0.23 tolerated(0.35) benign(0.001) TCGA-BR-A4QL-01 17 27493048 27493048 C T MYO18A Missense_Mutation p.R304Q 0.42 tolerated(0.27) benign(0.018) TCGA-BR-A4QL-01 17 27493332 27493332 G - MYO18A Frame_Shift_Del p.V210Wfs*86 0.34 TCGA-BR-A4QL-01 17 27869613 27869613 G A TAOK1 Missense_Mutation p.R860H 0.39 deleterious(0.02) benign(0.008) TCGA-BR-A4QL-01 17 27958582 27958582 G A SSH2 Silent p.S1183S 0.34 TCGA-BR-A4QL-01 17 28525491 28525491 G A SLC6A4 Missense_Mutation p.R626C 0.36 deleterious(0.04) benign(0) TCGA-BR-A4QL-01 17 30348267 30348267 G A LRRC37B Silent p.P34P 0.15 TCGA-BR-A4QL-01 17 30621430 30621430 C T RHBDL3 Missense_Mutation p.R213C 0.07 deleterious(0) probably_damaging(1) TCGA-BR-A4QL-01 17 30687623 30687623 A - ZNF207 Frame_Shift_Del p.K107Rfs*57 0.26 TCGA-BR-A4QL-01 17 30804557 30804557 G A PSMD11 Missense_Mutation p.V290M 0.05 deleterious(0) possibly_damaging(0.684) TCGA-BR-A4QL-01 17 3101552 3101552 T - OR1A2 Frame_Shift_Del p.L249Yfs*14 0.33 TCGA-BR-A4QL-01 17 33521221 33521221 C T SLC35G3 Missense_Mutation p.A36T 0.49 tolerated(0.27) benign(0.005) TCGA-BR-A4QL-01 17 33749996 33749996 C T SLFN12 Missense_Mutation p.V18M 0.36 tolerated(0.07) probably_damaging(0.997) TCGA-BR-A4QL-01 17 35300395 35300395 C - LHX1 Frame_Shift_Del p.E399Kfs*2 0.29 TCGA-BR-A4QL-01 17 36059174 36059174 G - HNF1B Frame_Shift_Del p.Q521Sfs*70 0.29 TCGA-BR-A4QL-01 17 3651333 3651333 C T ITGAE Missense_Mutation p.V680I 0.29 tolerated(0.23) possibly_damaging(0.467) TCGA-BR-A4QL-01 17 38319960 38319960 C T CASC3 Missense_Mutation p.R338W 0.31 deleterious_low_confidence(0.04) benign(0.04) TCGA-BR-A4QL-01 17 38922724 38922724 C T KRT26 3'UTR 0.21 TCGA-BR-A4QL-01 17 38938526 38938526 C A KRT27 Missense_Mutation p.G74W 0.42 deleterious(0.01) possibly_damaging(0.664) TCGA-BR-A4QL-01 17 3947659 3947660 CT - ZZEF1 Frame_Shift_Del p.R2008Sfs*4 0.25 TCGA-BR-A4QL-01 17 39551220 39551220 G A KRT31 Missense_Mutation p.A326V 0.35 deleterious(0.03) benign(0.201) TCGA-BR-A4QL-01 17 39777997 39777997 C T KRT17 Missense_Mutation p.A228T 0.32 tolerated(0.14) benign(0.086) TCGA-BR-A4QL-01 17 40328259 40328259 C - KCNH4 Frame_Shift_Del p.S215Lfs*62 0.32 TCGA-BR-A4QL-01 17 40453375 40453375 G A STAT5A Missense_Mutation p.G358R 0.36 deleterious(0) benign(0.354) TCGA-BR-A4QL-01 17 40705488 40705488 G A HSD17B1 Silent p.P99P 0.44 TCGA-BR-A4QL-01 17 40765935 40765935 C T TUBG1 Silent p.I254I 0.22 TCGA-BR-A4QL-01 17 40814996 40814996 C T TUBG2 Silent p.F135F 0.46 TCGA-BR-A4QL-01 17 40844682 40844682 G A CNTNAP1 Missense_Mutation p.R899Q 0.32 deleterious(0.01) probably_damaging(0.929) TCGA-BR-A4QL-01 17 40939869 40939870 - G WNK4 Frame_Shift_Ins p.V608Gfs*7 0.47 TCGA-BR-A4QL-01 17 41004138 41004138 A G AOC3 Missense_Mutation p.T260A 0.32 tolerated(0.5) benign(0.003) TCGA-BR-A4QL-01 17 41004674 41004674 C - AOC3 Frame_Shift_Del p.L440Cfs*46 0.30 TCGA-BR-A4QL-01 17 41006671 41006671 T A AOC3 Missense_Mutation p.Y603N 0.46 deleterious(0) probably_damaging(1) TCGA-BR-A4QL-01 17 41108509 41108509 G A AARSD1 Missense_Mutation p.A153V 0.30 tolerated(0.2) benign(0.005) TCGA-BR-A4QL-01 17 41141481 41141481 C T RUNDC1 Nonsense_Mutation p.R261* 0.44 TCGA-BR-A4QL-01 17 41343459 41343459 C T NBR1 Missense_Mutation p.R312C 0.28 deleterious(0.03) probably_damaging(0.993) TCGA-BR-A4QL-01 17 41719148 41719148 T C MEOX1 3'UTR 0.37 TCGA-BR-A4QL-01 17 42288502 42288502 G C UBTF Missense_Mutation p.Q370E 0.43 tolerated(0.16) benign(0.23) TCGA-BR-A4QL-01 17 42330695 42330695 C T SLC4A1 Missense_Mutation p.G701D 0.33 deleterious(0) probably_damaging(1) TCGA-BR-A4QL-01 17 42636425 42636425 C T FZD2 Missense_Mutation p.R457W 0.47 deleterious(0) probably_damaging(0.987) TCGA-BR-A4QL-01 17 46670643 46670643 G A HOXB5 Silent p.D134D 0.43 TCGA-BR-A4QL-01 17 46674002 46674002 G A HOXB6 Missense_Mutation p.R150C 0.38 deleterious(0) probably_damaging(1) TCGA-BR-A4QL-01 17 48262761 48262761 T - COL1A1 3'UTR 0.37 TCGA-BR-A4QL-01 17 48267382 48267382 C T COL1A1 Missense_Mutation p.A847T 0.55 unknown(0) TCGA-BR-A4QL-01 17 48434499 48434499 G A XYLT2 Silent p.A609A 0.49 TCGA-BR-A4QL-01 17 48618282 48618282 T G EPN3 Missense_Mutation p.S370A 0.35 tolerated(0.21) benign(0.147) TCGA-BR-A4QL-01 17 4880409 4880409 C T CAMTA2 Missense_Mutation p.R638Q 0.43 deleterious(0.01) probably_damaging(0.992) TCGA-BR-A4QL-01 17 4886166 4886166 G A CAMTA2 Silent p.I98I 0.36 TCGA-BR-A4QL-01 17 51901717 51901717 C T KIF2B Silent p.G441G 0.38 TCGA-BR-A4QL-01 17 53014489 53014489 C T TOM1L1 Missense_Mutation p.A312V 0.42 deleterious(0.04) probably_damaging(0.991) TCGA-BR-A4QL-01 17 56060687 56060687 G A VEZF1 Missense_Mutation p.A34V 0.36 tolerated(0.05) possibly_damaging(0.549) TCGA-BR-A4QL-01 17 56233200 56233200 C T OR4D1 Missense_Mutation p.S229L 0.41 tolerated(0.07) possibly_damaging(0.905) TCGA-BR-A4QL-01 17 56291642 56291642 C T MKS1 Missense_Mutation p.A208T 0.30 deleterious(0) probably_damaging(0.955) TCGA-BR-A4QL-01 17 56811500 56811500 G A RAD51C Missense_Mutation p.V350I 0.36 tolerated(0.2) benign(0.008) TCGA-BR-A4QL-01 17 59485721 59485721 C T TBX2 Missense_Mutation p.R665C 0.42 tolerated(0.07) benign(0.249) TCGA-BR-A4QL-01 17 59560345 59560345 C - TBX4 Frame_Shift_Del p.P371Lfs*8 0.35 TCGA-BR-A4QL-01 17 61498206 61498206 C T TANC2 Silent p.A1621A 0.32 TCGA-BR-A4QL-01 17 61824306 61824306 G A CCDC47 Missense_Mutation p.R463C 0.53 deleterious(0) possibly_damaging(0.818) TCGA-BR-A4QL-01 17 61898289 61898289 C T FTSJ3 Missense_Mutation p.R661Q 0.38 tolerated(0.09) benign(0.058) TCGA-BR-A4QL-01 17 61912912 61912912 G A SMARCD2 Missense_Mutation p.R195W 0.38 deleterious(0) probably_damaging(0.993) TCGA-BR-A4QL-01 17 61972557 61972557 C T CSH1 Missense_Mutation p.R160Q 0.38 tolerated(0.32) benign(0.002) TCGA-BR-A4QL-01 17 62541844 62541855 AAAAAAAAGGGG - SMURF2 3'UTR 0.41 TCGA-BR-A4QL-01 17 62856650 62856651 - T LRRC37A3 Frame_Shift_Ins p.R1205Kfs*20 0.32 TCGA-BR-A4QL-01 17 63133598 63133598 G - RGS9 5'UTR 0.29 TCGA-BR-A4QL-01 17 63532585 63532585 C - AXIN2 Frame_Shift_Del p.G665Afs*24 0.38 TCGA-BR-A4QL-01 17 66040473 66040473 G A KPNA2 Missense_Mutation p.V401M 0.08 deleterious(0.04) possibly_damaging(0.694) TCGA-BR-A4QL-01 17 66533689 66533689 G A FAM20A Nonsense_Mutation p.Q519* 0.34 TCGA-BR-A4QL-01 17 68128923 68128923 C T KCNJ16 Missense_Mutation p.T232M 0.34 deleterious(0.03) probably_damaging(0.964) TCGA-BR-A4QL-01 17 68129127 68129127 T A KCNJ16 Missense_Mutation p.V300D 0.36 deleterious(0) possibly_damaging(0.636) TCGA-BR-A4QL-01 17 6930069 6930069 G A BCL6B Missense_Mutation p.R367Q 0.37 tolerated(0.06) benign(0.11) TCGA-BR-A4QL-01 17 71233115 71233115 G - C17orf80 Frame_Shift_Del p.E500Kfs*16 0.36 TCGA-BR-A4QL-01 17 7139520 7139520 G - PHF23 Frame_Shift_Del p.S243Vfs*24 0.29 TCGA-BR-A4QL-01 17 7193758 7193758 G - YBX2 Frame_Shift_Del p.R186Gfs*62 0.34 TCGA-BR-A4QL-01 17 7217257 7217258 CT - GPS2 Frame_Shift_Del p.R149Sfs*56 0.30 TCGA-BR-A4QL-01 17 7231005 7231005 C - NEURL4 Frame_Shift_Del p.V161Wfs*13 0.11 TCGA-BR-A4QL-01 17 72739292 72739292 C T RAB37 Missense_Mutation p.R96W 0.30 deleterious(0) probably_damaging(0.999) TCGA-BR-A4QL-01 17 73239146 73239146 T C GGA3 Missense_Mutation p.K176E 0.33 deleterious(0) possibly_damaging(0.488) TCGA-BR-A4QL-01 17 7329696 7329696 G A C17orf74 Missense_Mutation p.R129H 0.35 tolerated(0.37) probably_damaging(0.923) TCGA-BR-A4QL-01 17 73316454 73316454 C T GRB2 Missense_Mutation p.V217I 0.39 tolerated_low_confidence(0.25) benign(0) TCGA-BR-A4QL-01 17 73486331 73486331 C A KIAA0195 Missense_Mutation p.P324H 0.35 deleterious(0) probably_damaging(0.999) TCGA-BR-A4QL-01 17 7365565 7365565 A G ZBTB4 Silent p.A912A 0.41 TCGA-BR-A4QL-01 17 74071131 74071131 C T GALR2 Missense_Mutation p.A56V 0.49 tolerated(0.55) benign(0.007) TCGA-BR-A4QL-01 17 74072797 74072797 G - GALR2 Frame_Shift_Del p.L152Cfs*10 0.27 TCGA-BR-A4QL-01 17 7417102 7417102 C - POLR2A Frame_Shift_Del p.P1841Qfs*140 0.09 TCGA-BR-A4QL-01 17 74328436 74328437 - C PRPSAP1 Frame_Shift_Ins p.V124Gfs*58 0.31 TCGA-BR-A4QL-01 17 76799940 76799942 GGA - USP36 In_Frame_Del p.S779del 0.40 TCGA-BR-A4QL-01 17 76851906 76851906 G A TIMP2 Missense_Mutation p.P169L 0.37 deleterious(0.03) benign(0.035) TCGA-BR-A4QL-01 17 77707394 77707394 C T ENPP7 Silent p.G114G 0.44 TCGA-BR-A4QL-01 17 77709291 77709291 C T ENPP7 Silent p.N283N 0.25 TCGA-BR-A4QL-01 17 77922699 77922699 C - TBC1D16 Frame_Shift_Del p.E505Kfs*9 0.28 TCGA-BR-A4QL-01 17 78090851 78090851 C T GAA Silent p.A758A 0.46 TCGA-BR-A4QL-01 17 78195370 78195370 C T SLC26A11 Missense_Mutation p.S4L 0.24 deleterious_low_confidence(0.01) benign(0.081) TCGA-BR-A4QL-01 17 78314019 78314019 C - RNF213 Frame_Shift_Del p.Q1953Rfs*50 0.27 TCGA-BR-A4QL-01 17 7833935 7833935 G A TRAPPC1 Missense_Mutation p.R143W 0.44 deleterious(0) possibly_damaging(0.75) TCGA-BR-A4QL-01 17 78388912 78388912 G A ENDOV 5'Flank 0.50 TCGA-BR-A4QL-01 17 79094123 79094123 G A AATK Missense_Mutation p.R1205C 0.37 deleterious(0) probably_damaging(0.939) TCGA-BR-A4QL-01 17 79095729 79095729 C T AATK Silent p.A669A 0.35 TCGA-BR-A4QL-01 17 79220706 79220706 C T SLC38A10 Missense_Mutation p.E741K 0.40 tolerated(0.14) benign(0.102) TCGA-BR-A4QL-01 17 79234119 79234119 C T SLC38A10 Missense_Mutation p.E403K 0.20 tolerated(0.68) benign(0.126) TCGA-BR-A4QL-01 17 7976235 7976235 C T ALOX12B Missense_Mutation p.V654M 0.42 deleterious(0) possibly_damaging(0.643) TCGA-BR-A4QL-01 17 79994510 79994510 T C DCXR Missense_Mutation p.R120G 0.45 deleterious(0.02) benign(0.018) TCGA-BR-A4QL-01 17 80018606 80018606 G A DUS1L Silent p.H331H 0.58 TCGA-BR-A4QL-01 17 80041487 80041487 C T FASN Silent p.A1749A 0.31 TCGA-BR-A4QL-01 17 80049207 80049207 G A FASN Silent p.P461P 0.47 TCGA-BR-A4QL-01 17 8065661 8065661 G - VAMP2 Frame_Shift_Del p.P10Lfs*37 0.33 TCGA-BR-A4QL-01 17 8172397 8172397 C A PFAS Missense_Mutation p.P1278T 0.41 tolerated(0.07) possibly_damaging(0.596) TCGA-BR-A4QL-01 17 8219412 8219412 G A ARHGEF15 Silent p.P550P 0.29 TCGA-BR-A4QL-01 17 8408178 8408178 G A MYH10 Nonsense_Mutation p.R1145* 0.07 TCGA-BR-A4QL-01 17 8700837 8700837 C T MFSD6L Nonsense_Mutation p.W534* 0.35 TCGA-BR-A4QL-01 17 9489257 9489257 G A WDR16 Missense_Mutation p.A80T 0.36 deleterious(0) probably_damaging(0.997) TCGA-BR-A4QL-01 17 9694592 9694592 T C DHRS7C Missense_Mutation p.M4V 0.42 tolerated(0.64) unknown(0) TCGA-BR-A4QL-01 18 12325616 12325616 C T TUBB6 Silent p.R276R 0.50 TCGA-BR-A4QL-01 18 14179436 14179436 C A ANKRD20A5P RNA 0.24 TCGA-BR-A4QL-01 18 21057190 21057190 C T RIOK3 Silent p.H434H 0.41 TCGA-BR-A4QL-01 18 22807137 22807137 T C ZNF521 Missense_Mutation p.S249G 0.35 tolerated(0.54) benign(0.338) TCGA-BR-A4QL-01 18 24039669 24039669 T C KCTD1 Missense_Mutation p.N177S 0.41 tolerated(0.3) benign(0.006) TCGA-BR-A4QL-01 18 30092428 30092428 C - WBP11P1 RNA 0.33 TCGA-BR-A4QL-01 18 30926269 30926270 - A CCDC178 Frame_Shift_Ins p.L188Ffs*12 0.36 TCGA-BR-A4QL-01 18 34310626 34310626 A G FHOD3 Silent p.G970G 0.35 TCGA-BR-A4QL-01 18 40851770 40851770 T A SYT4 Missense_Mutation p.I293F 0.41 tolerated(0.13) benign(0.087) TCGA-BR-A4QL-01 18 42281469 42281469 A G SETBP1 Missense_Mutation p.E53G 0.40 tolerated(0.19) possibly_damaging(0.621) TCGA-BR-A4QL-01 18 42531549 42531549 C T SETBP1 Silent p.H748H 0.33 TCGA-BR-A4QL-01 18 42531687 42531687 C T SETBP1 Silent p.S794S 0.40 TCGA-BR-A4QL-01 18 45395688 45395688 C T SMAD2 Missense_Mutation p.C149Y 0.34 deleterious(0) probably_damaging(0.995) TCGA-BR-A4QL-01 18 45567085 45567085 C - ZBTB7C Frame_Shift_Del p.D132Tfs*90 0.33 TCGA-BR-A4QL-01 18 47322226 47322226 A G ACAA2 Missense_Mutation p.V113A 0.38 tolerated(0.11) possibly_damaging(0.626) TCGA-BR-A4QL-01 18 48256134 48256134 C T MAPK4 Silent p.D558D 0.44 TCGA-BR-A4QL-01 18 50936875 50936875 A T DCC Missense_Mutation p.M997L 0.38 deleterious(0.03) benign(0.027) TCGA-BR-A4QL-01 18 55268796 55268796 A - NARS 3'UTR 0.40 TCGA-BR-A4QL-01 18 57013194 57013194 T - LMAN1 Frame_Shift_Del p.E305Rfs*22 0.31 TCGA-BR-A4QL-01 18 5891840 5891840 A G TMEM200C Missense_Mutation p.W75R 0.28 deleterious(0) probably_damaging(0.992) TCGA-BR-A4QL-01 18 59221697 59221697 C T CDH20 Silent p.Y725Y 0.34 TCGA-BR-A4QL-01 18 59855209 59855209 C T KIAA1468 Silent p.G157G 0.50 TCGA-BR-A4QL-01 18 61156698 61156698 G A SERPINB5 Splice_Site p.X142_splice 0.34 TCGA-BR-A4QL-01 18 61463517 61463517 C T SERPINB7 Silent p.A118A 0.38 TCGA-BR-A4QL-01 18 61570186 61570186 A G SERPINB2 Missense_Mutation p.K299E 0.20 tolerated(0.72) benign(0.009) TCGA-BR-A4QL-01 18 63526952 63526953 - A CDH7 Frame_Shift_Ins p.I503Nfs*6 0.35 TCGA-BR-A4QL-01 18 67365809 67365809 G A DOK6 Nonsense_Mutation p.W193* 0.10 TCGA-BR-A4QL-01 18 67788837 67788837 A C RTTN Silent p.S1161S 0.33 TCGA-BR-A4QL-01 18 67869206 67869207 - T RTTN Frame_Shift_Ins p.N137Kfs*3 0.29 TCGA-BR-A4QL-01 18 6950849 6950849 A C LAMA1 Missense_Mutation p.F2777V 0.27 deleterious(0.01) possibly_damaging(0.894) TCGA-BR-A4QL-01 18 6958539 6958539 G A LAMA1 Missense_Mutation p.T2634M 0.51 tolerated(0.14) benign(0.16) TCGA-BR-A4QL-01 18 70209264 70209264 G A CBLN2 Silent p.P44P 0.52 TCGA-BR-A4QL-01 18 70534513 70534513 C T NETO1 Missense_Mutation p.R5H 0.45 tolerated_low_confidence(0.25) benign(0.001) TCGA-BR-A4QL-01 18 77119425 77119425 C T ATP9B Missense_Mutation p.A992V 0.30 tolerated(0.08) benign(0.041) TCGA-BR-A4QL-01 18 77624158 77624158 G A KCNG2 Missense_Mutation p.R164H 0.47 tolerated(0.07) benign(0.019) TCGA-BR-A4QL-01 18 77679291 77679291 G A PQLC1 Silent p.S167S 0.39 TCGA-BR-A4QL-01 18 909505 909505 G C ADCYAP1 Missense_Mutation p.D134H 0.31 deleterious(0) probably_damaging(0.988) TCGA-BR-A4QL-01 18 9254358 9254358 G T ANKRD12 Missense_Mutation p.D365Y 0.31 deleterious(0) probably_damaging(0.999) TCGA-BR-A4QL-01 19 10200705 10200705 C T C19orf66 Silent p.R122R 0.21 TCGA-BR-A4QL-01 19 10677960 10677960 A G CDKN2D Missense_Mutation p.V92A 0.80 tolerated(0.07) benign(0.172) TCGA-BR-A4QL-01 19 10753993 10753994 - TAAG SLC44A2 Frame_Shift_Ins p.P685Lfs*145 0.68 TCGA-BR-A4QL-01 19 1123582 1123582 C T SBNO2 Silent p.A193A 0.70 TCGA-BR-A4QL-01 19 12772078 12772078 G A MAN2B1 Missense_Mutation p.A341V 0.28 deleterious(0.02) benign(0.184) TCGA-BR-A4QL-01 19 12910705 12910705 T C PRDX2 Missense_Mutation p.Q160R 0.82 tolerated(0.1) benign(0.053) TCGA-BR-A4QL-01 19 13008170 13008170 C T GCDH Missense_Mutation p.A337V 0.33 tolerated_low_confidence(0.07) probably_damaging(0.981) TCGA-BR-A4QL-01 19 13248179 13248181 CTT - NACC1 In_Frame_Del p.F407del 0.78 TCGA-BR-A4QL-01 19 13395983 13395983 T - CACNA1A Frame_Shift_Del p.E1198Rfs*43 0.48 TCGA-BR-A4QL-01 19 14217673 14217673 G A PRKACA Nonsense_Mutation p.R46* 0.80 TCGA-BR-A4QL-01 19 1483414 1483414 G A PCSK4 Silent p.A480A 0.07 TCGA-BR-A4QL-01 19 15355182 15355182 C T BRD4 Missense_Mutation p.G814D 0.18 probably_damaging(0.931) TCGA-BR-A4QL-01 19 15536330 15536330 G A WIZ Missense_Mutation p.T444I 0.50 tolerated(0.16) benign(0.266) TCGA-BR-A4QL-01 19 15795637 15795637 G A CYP4F12 Silent p.G310G 0.36 TCGA-BR-A4QL-01 19 16268143 16268143 C T HSH2D 3'Flank 0.40 TCGA-BR-A4QL-01 19 17100545 17100545 C - CPAMD8 Frame_Shift_Del p.A482Lfs*40 0.30 TCGA-BR-A4QL-01 19 17411739 17411739 C T ABHD8 Silent p.A229A 0.41 TCGA-BR-A4QL-01 19 17683348 17683348 C T COLGALT1 Missense_Mutation p.R296C 0.31 deleterious(0) possibly_damaging(0.772) TCGA-BR-A4QL-01 19 17922600 17922600 G A B3GNT3 Missense_Mutation p.R263Q 0.42 tolerated(0.31) benign(0.017) TCGA-BR-A4QL-01 19 17948862 17948862 A C JAK3 Missense_Mutation p.L527R 0.44 deleterious(0) probably_damaging(0.998) TCGA-BR-A4QL-01 19 18092827 18092827 A G KCNN1 Missense_Mutation p.T270A 0.47 tolerated(0.14) benign(0.04) TCGA-BR-A4QL-01 19 18378115 18378115 C T KIAA1683 Missense_Mutation p.V79I 0.07 tolerated(0.88) benign(0.001) TCGA-BR-A4QL-01 19 18499097 18499097 G A GDF15 Silent p.V93V 0.33 TCGA-BR-A4QL-01 19 18569015 18569015 C T ELL Missense_Mutation p.R290Q 0.33 deleterious(0.01) probably_damaging(0.995) TCGA-BR-A4QL-01 19 18779108 18779108 C T KLHL26 Missense_Mutation p.R301C 0.39 deleterious(0) probably_damaging(0.999) TCGA-BR-A4QL-01 19 18980875 18980875 G A GDF1 Missense_Mutation p.T81M 0.50 tolerated(0.18) benign(0.079) TCGA-BR-A4QL-01 19 19017912 19017912 G A COPE Silent p.I100I 0.43 TCGA-BR-A4QL-01 19 19112468 19112468 C T SUGP2 Missense_Mutation p.R982Q 0.43 deleterious(0) probably_damaging(0.999) TCGA-BR-A4QL-01 19 19312842 19312842 G - NR2C2AP Frame_Shift_Del p.I105Yfs*9 0.26 TCGA-BR-A4QL-01 19 19371881 19371881 G A HAPLN4 Silent p.A75A 0.41 TCGA-BR-A4QL-01 19 19455688 19455689 - C MAU2 Frame_Shift_Ins p.R372Pfs*61 0.28 TCGA-BR-A4QL-01 19 19616298 19616298 C T GATAD2A 3'UTR 0.39 TCGA-BR-A4QL-01 19 19762529 19762529 G A ATP13A1 Silent p.H768H 0.53 TCGA-BR-A4QL-01 19 20236314 20236314 T A CTC-260E6.2 3'Flank 0.27 TCGA-BR-A4QL-01 19 21281018 21281018 A G ZNF714 5'UTR 0.36 TCGA-BR-A4QL-01 19 30500156 30500156 G A URI1 Missense_Mutation p.D311N 0.34 tolerated(0.51) benign(0.003) TCGA-BR-A4QL-01 19 30934862 30934862 G A ZNF536 Silent p.P131P 0.50 TCGA-BR-A4QL-01 19 31767913 31767913 G A TSHZ3 Missense_Mutation p.P929L 0.38 deleterious(0.01) probably_damaging(0.982) TCGA-BR-A4QL-01 19 3179235 3179235 C T S1PR4 Missense_Mutation p.R149W 0.80 deleterious(0) probably_damaging(0.912) TCGA-BR-A4QL-01 19 34833075 34833075 C - KIAA0355 Frame_Shift_Del p.P747Rfs*48 0.30 TCGA-BR-A4QL-01 19 35085475 35085475 G A SCGB2B2 5'UTR 0.08 TCGA-BR-A4QL-01 19 36046232 36046232 G A ATP4A Missense_Mutation p.A721V 0.31 deleterious(0.05) possibly_damaging(0.473) TCGA-BR-A4QL-01 19 36050958 36050958 C - ATP4A Frame_Shift_Del p.V269Wfs*2 0.16 TCGA-BR-A4QL-01 19 36106176 36106176 C T HAUS5 Nonsense_Mutation p.R125* 0.27 TCGA-BR-A4QL-01 19 36223432 36223432 G A KMT2B Silent p.A1994A 0.31 TCGA-BR-A4QL-01 19 36230720 36230720 G A IGFLR1 Silent p.C204C 0.37 TCGA-BR-A4QL-01 19 36333366 36333366 T C NPHS1 Silent p.K807K 0.41 TCGA-BR-A4QL-01 19 36339017 36339017 G A NPHS1 Missense_Mutation p.R456W 0.29 deleterious(0) probably_damaging(0.997) TCGA-BR-A4QL-01 19 36351456 36351456 G A KIRREL2 Missense_Mutation p.R272H 0.40 tolerated(0.15) benign(0.017) TCGA-BR-A4QL-01 19 36370282 36370282 G A APLP1 Missense_Mutation p.R632H 0.23 deleterious(0) probably_damaging(0.998) TCGA-BR-A4QL-01 19 37211524 37211524 T G ZNF567 Missense_Mutation p.I602S 0.46 tolerated(0.17) benign(0.11) TCGA-BR-A4QL-01 19 3730369 3730369 G A TJP3 Missense_Mutation p.R102Q 0.44 deleterious(0.01) probably_damaging(0.97) TCGA-BR-A4QL-01 19 38077712 38077712 A T ZNF571 Intron 0.43 TCGA-BR-A4QL-01 19 38190535 38190535 C T ZNF607 Missense_Mutation p.R166H 0.35 deleterious(0.01) possibly_damaging(0.738) TCGA-BR-A4QL-01 19 39108029 39108029 G A MAP4K1 Silent p.H71H 0.39 TCGA-BR-A4QL-01 19 39233692 39233692 G A CAPN12 Silent p.D96D 0.31 TCGA-BR-A4QL-01 19 39798594 39798594 G A LRFN1 Silent p.A665A 0.27 TCGA-BR-A4QL-01 19 39963854 39963854 G A SUPT5H Missense_Mutation p.R757H 0.42 tolerated(0.14) benign(0.147) TCGA-BR-A4QL-01 19 40424533 40424533 G A FCGBP Missense_Mutation p.S557L 0.33 possibly_damaging(0.883) TCGA-BR-A4QL-01 19 40886655 40886655 G A HIPK4 Nonsense_Mutation p.R415* 0.32 TCGA-BR-A4QL-01 19 40900561 40900561 G A PRX Missense_Mutation p.A1233V 0.44 tolerated(0.46) possibly_damaging(0.695) TCGA-BR-A4QL-01 19 41116547 41116547 C G LTBP4 Missense_Mutation p.H665Q 0.31 tolerated(0.35) benign(0.034) TCGA-BR-A4QL-01 19 41133678 41133678 G A LTBP4 Missense_Mutation p.G1545S 0.33 deleterious(0.01) benign(0.211) TCGA-BR-A4QL-01 19 41188655 41188655 C T NUMBL Missense_Mutation p.R126Q 0.10 deleterious(0) possibly_damaging(0.651) TCGA-BR-A4QL-01 19 41211331 41211331 G A ADCK4 Missense_Mutation p.S130F 0.36 deleterious(0.01) possibly_damaging(0.62) TCGA-BR-A4QL-01 19 41758814 41758814 T C AXL Missense_Mutation p.M623T 0.29 deleterious(0) possibly_damaging(0.903) TCGA-BR-A4QL-01 19 41826288 41826288 C T CCDC97 Missense_Mutation p.S275L 0.34 deleterious(0.02) probably_damaging(0.999) TCGA-BR-A4QL-01 19 4207553 4207553 G A ANKRD24 Missense_Mutation p.R198H 0.34 deleterious(0.04) probably_damaging(0.954) TCGA-BR-A4QL-01 19 42219022 42219022 C T CEACAM5 Missense_Mutation p.P186L 0.36 tolerated(0.24) benign(0.224) TCGA-BR-A4QL-01 19 42354689 42354689 A G DMRTC2 Silent p.S304S 0.38 TCGA-BR-A4QL-01 19 42398554 42398554 G T ARHGEF1 Missense_Mutation p.A274S 0.26 tolerated(0.71) benign(0.004) TCGA-BR-A4QL-01 19 42485961 42485961 C T ATP1A3 Silent p.S418S 0.08 TCGA-BR-A4QL-01 19 42703893 42703893 C T DEDD2 Silent p.A226A 0.41 TCGA-BR-A4QL-01 19 42729656 42729656 C T ZNF526 Silent p.R367R 0.41 TCGA-BR-A4QL-01 19 42794441 42794441 C - CIC Frame_Shift_Del p.P509Hfs*14 0.33 TCGA-BR-A4QL-01 19 42911849 42911849 G A LIPE Missense_Mutation p.T584M 0.33 deleterious(0.03) possibly_damaging(0.806) TCGA-BR-A4QL-01 19 43093151 43093151 T A CEACAM8 Missense_Mutation p.Y248F 0.44 tolerated(0.19) benign(0.097) TCGA-BR-A4QL-01 19 43757688 43757688 T - PSG9 3'UTR 0.31 TCGA-BR-A4QL-01 19 43859670 43859670 C A CD177 Missense_Mutation p.P128H 0.29 deleterious(0) probably_damaging(0.941) TCGA-BR-A4QL-01 19 44223371 44223371 G A IRGC Missense_Mutation p.A221T 0.51 tolerated(0.68) benign(0.002) TCGA-BR-A4QL-01 19 45477826 45477826 A G CLPTM1 Missense_Mutation p.E147G 0.32 tolerated(0.4) benign(0.348) TCGA-BR-A4QL-01 19 4556000 4556000 G A SEMA6B Silent p.S157S 0.85 TCGA-BR-A4QL-01 19 45900258 45900259 - G PPP1R13L Frame_Shift_Ins p.R86Pfs*169 0.38 TCGA-BR-A4QL-01 19 46887054 46887054 A G PPP5C Silent p.V239V 0.34 TCGA-BR-A4QL-01 19 47569825 47569825 C T ZC3H4 Missense_Mutation p.A1234T 0.50 unknown(0) TCGA-BR-A4QL-01 19 47870299 47870299 C T DHX34 Missense_Mutation p.A552V 0.18 tolerated(0.12) benign(0.283) TCGA-BR-A4QL-01 19 47969508 47969508 C T SLC8A2 Silent p.P51P 0.41 TCGA-BR-A4QL-01 19 48220237 48220237 G A EHD2 Missense_Mutation p.R123H 0.29 deleterious(0.01) benign(0.393) TCGA-BR-A4QL-01 19 48789818 48789818 T - ZNF114 Frame_Shift_Del p.Y315Ifs*6 0.34 TCGA-BR-A4QL-01 19 48806955 48806955 G T CCDC114 Missense_Mutation p.L277M 0.35 tolerated(0.19) possibly_damaging(0.662) TCGA-BR-A4QL-01 19 48879582 48879582 T A SYNGR4 3'UTR 0.62 TCGA-BR-A4QL-01 19 48946554 48946554 C T GRIN2D Missense_Mutation p.A1124V 0.31 tolerated_low_confidence(0.18) unknown(0) TCGA-BR-A4QL-01 19 48954443 48954443 C T GRWD1 Silent p.G326G 0.38 TCGA-BR-A4QL-01 19 48981555 48981555 C - CYTH2 Frame_Shift_Del p.L305Wfs*4 0.39 TCGA-BR-A4QL-01 19 49104392 49104392 G - FAM83E Frame_Shift_Del p.R471Gfs*70 0.23 TCGA-BR-A4QL-01 19 49131530 49131530 G - SPHK2 Frame_Shift_Del 0.34 TCGA-BR-A4QL-01 19 49206867 49206867 C T FUT2 Silent p.A218A 0.08 TCGA-BR-A4QL-01 19 49247735 49247735 G T IZUMO1 Silent p.T124T 0.32 TCGA-BR-A4QL-01 19 49254455 49254455 A G FUT1 Silent p.H28H 0.28 TCGA-BR-A4QL-01 19 49548486 49548486 C - CGB5 Frame_Shift_Del p.S147Afs*? 0.19 TCGA-BR-A4QL-01 19 49637338 49637338 C T PPFIA3 Silent p.S431S 0.40 TCGA-BR-A4QL-01 19 49656860 49656860 C T HRC Silent p.E545E 0.50 TCGA-BR-A4QL-01 19 49933806 49933806 G - SLC17A7 Frame_Shift_Del p.R552Gfs*30 0.32 TCGA-BR-A4QL-01 19 50128756 50128756 G A PRR12 Silent p.Q2001Q 0.38 TCGA-BR-A4QL-01 19 50155638 50155638 G A SCAF1 Silent p.A664A 0.42 TCGA-BR-A4QL-01 19 50155754 50155754 G A SCAF1 Missense_Mutation p.R703Q 0.38 unknown(0) TCGA-BR-A4QL-01 19 50475183 50475183 C - VRK3 3'Flank 0.41 TCGA-BR-A4QL-01 19 50666366 50666366 A G IZUMO2 Missense_Mutation p.L29P 0.43 tolerated(0.12) benign(0) TCGA-BR-A4QL-01 19 50735200 50735200 C T MYH14 Silent p.L329L 0.38 TCGA-BR-A4QL-01 19 50826646 50826646 G T KCNC3 Missense_Mutation p.L522M 0.35 deleterious(0.02) probably_damaging(1) TCGA-BR-A4QL-01 19 50939882 50939882 C A MYBPC2 Silent p.T118T 0.30 TCGA-BR-A4QL-01 19 51217127 51217127 A T SHANK1 Silent p.I240I 0.15 TCGA-BR-A4QL-01 19 51520463 51520463 G A KLK10 Missense_Mutation p.P58S 0.72 deleterious(0) probably_damaging(0.989) TCGA-BR-A4QL-01 19 52658574 52658574 G A ZNF836 Missense_Mutation p.R788C 0.37 tolerated(0.07) probably_damaging(0.997) TCGA-BR-A4QL-01 19 52723442 52723442 G A PPP2R1A Missense_Mutation p.G435R 0.04 deleterious(0) probably_damaging(0.997) TCGA-BR-A4QL-01 19 52817449 52817449 C T ZNF480 Missense_Mutation p.A39V 0.36 deleterious(0) benign(0.12) TCGA-BR-A4QL-01 19 53453156 53453156 A G ZNF816 Silent p.N624N 0.38 TCGA-BR-A4QL-01 19 53657002 53657002 C T ZNF347 5'UTR 0.31 TCGA-BR-A4QL-01 19 53740143 53740143 T A ZNF677 3'UTR 0.42 TCGA-BR-A4QL-01 19 54301519 54301519 C T NLRP12 Missense_Mutation p.A969T 0.38 tolerated(0.94) benign(0.002) TCGA-BR-A4QL-01 19 54496077 54496077 C T CACNG6 5'UTR 0.44 TCGA-BR-A4QL-01 19 54742958 54742958 G A LILRA6 Silent p.H439H 0.23 TCGA-BR-A4QL-01 19 54803262 54803262 C A LILRA3 Missense_Mutation p.G139W 0.05 deleterious(0.01) possibly_damaging(0.451) TCGA-BR-A4QL-01 19 55481624 55481624 C T NLRP2 Nonsense_Mutation p.R81* 0.38 TCGA-BR-A4QL-01 19 55693262 55693262 C T PTPRH Missense_Mutation p.V1070I 0.43 possibly_damaging(0.899) TCGA-BR-A4QL-01 19 55696967 55696967 C T PTPRH Missense_Mutation p.V989I 0.35 probably_damaging(0.937) TCGA-BR-A4QL-01 19 55739642 55739642 C - TMEM86B Frame_Shift_Del p.G72Afs*85 0.40 TCGA-BR-A4QL-01 19 5590343 5590343 C - SAFB2 Frame_Shift_Del p.G824Afs*8 0.62 TCGA-BR-A4QL-01 19 56104134 56104134 G A FIZ1 Silent p.T391T 0.38 TCGA-BR-A4QL-01 19 56390204 56390204 C T NLRP4 Missense_Mutation p.A914V 0.39 tolerated(0.1) possibly_damaging(0.811) TCGA-BR-A4QL-01 19 56671150 56671150 C A ZNF444 Silent p.S188S 0.50 TCGA-BR-A4QL-01 19 58452730 58452730 C A ZNF256 Missense_Mutation p.W482C 0.44 deleterious(0.01) benign(0.184) TCGA-BR-A4QL-01 19 58485854 58485854 C T C19orf18 5'UTR 0.08 TCGA-BR-A4QL-01 19 58867745 58867745 G A ZNF497 Silent p.C419C 0.33 TCGA-BR-A4QL-01 19 58982407 58982407 C T ZNF324 Missense_Mutation p.A183V 0.51 tolerated(0.36) benign(0.01) TCGA-BR-A4QL-01 19 608110 608110 C T HCN2 Silent p.Y455Y 0.73 TCGA-BR-A4QL-01 19 6466890 6466890 C - CRB3 Intron 0.46 TCGA-BR-A4QL-01 19 7143042 7143042 G A INSR Missense_Mutation p.T776M 0.38 tolerated(0.05) probably_damaging(0.945) TCGA-BR-A4QL-01 19 7170609 7170609 T A INSR Silent p.G474G 0.05 TCGA-BR-A4QL-01 19 7521235 7521235 C T ARHGEF18 Silent p.T521T 0.80 TCGA-BR-A4QL-01 19 7585043 7585043 G A ZNF358 Silent p.A305A 0.79 TCGA-BR-A4QL-01 19 7805963 7805963 G T CD209 3'UTR 0.76 TCGA-BR-A4QL-01 19 7806378 7806378 A T CD209 3'UTR 0.50 TCGA-BR-A4QL-01 19 7963631 7963631 G A LRRC8E Missense_Mutation p.R75Q 0.85 tolerated(0.61) benign(0) TCGA-BR-A4QL-01 19 7977342 7977342 G - MAP2K7 3'UTR 0.76 TCGA-BR-A4QL-01 19 8651494 8651494 T C ADAMTS10 Missense_Mutation p.Q784R 0.79 tolerated(0.18) benign(0.002) TCGA-BR-A4QL-01 19 871999 871999 C T MED16 Silent p.V675V 0.38 TCGA-BR-A4QL-01 19 9083880 9083880 C T MUC16 Silent p.P2645P 0.26 TCGA-BR-A4QL-01 19 9204168 9204168 T C OR1M1 Missense_Mutation p.V83A 0.64 tolerated(0.49) benign(0.004) TCGA-BR-A4QL-01 19 9272146 9272146 G A ZNF317 3'UTR 0.73 TCGA-BR-A4QL-01 1 100330058 100330058 A G AGL Missense_Mutation p.T193A 0.42 deleterious(0.01) benign(0.061) TCGA-BR-A4QL-01 1 100618013 100618013 C T LRRC39 Missense_Mutation p.E294K 0.45 tolerated(0.14) possibly_damaging(0.543) TCGA-BR-A4QL-01 1 100756997 100756997 C T RTCA Silent p.D359D 0.37 TCGA-BR-A4QL-01 1 100964991 100964991 C A CDC14A 3'UTR 0.38 TCGA-BR-A4QL-01 1 101705418 101705418 C T S1PR1 Missense_Mutation p.A293V 0.37 deleterious(0.04) benign(0.097) TCGA-BR-A4QL-01 1 103491152 103491152 A G COL11A1 Silent p.D305D 0.38 TCGA-BR-A4QL-01 1 104120145 104120145 A G AMY2B Missense_Mutation p.N379D 0.31 tolerated(1) benign(0) TCGA-BR-A4QL-01 1 104120389 104120389 A G AMY2B Missense_Mutation p.N423S 0.34 deleterious(0.01) possibly_damaging(0.658) TCGA-BR-A4QL-01 1 10700033 10700033 G A CASZ1 Missense_Mutation p.R1416W 0.46 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BR-A4QL-01 1 110086776 110086778 GAG - GPR61 In_Frame_Del p.E379del 0.52 TCGA-BR-A4QL-01 1 110300588 110300588 C T EPS8L3 Silent p.G271G 0.10 TCGA-BR-A4QL-01 1 11097818 11097818 C - MASP2 Frame_Shift_Del p.V314Cfs*7 0.28 TCGA-BR-A4QL-01 1 111216137 111216137 G A KCNA3 Missense_Mutation p.P432L 0.37 deleterious(0) probably_damaging(1) TCGA-BR-A4QL-01 1 111217309 111217309 C T KCNA3 Silent p.A41A 0.64 TCGA-BR-A4QL-01 1 11129665 11129666 TT - EXOSC10 Frame_Shift_Del p.K813Rfs*28 0.33 TCGA-BR-A4QL-01 1 112269514 112269514 C T FAM212B 3'UTR 0.38 TCGA-BR-A4QL-01 1 11303337 11303337 T C MTOR Missense_Mutation p.T416A 0.43 tolerated(0.43) benign(0.022) TCGA-BR-A4QL-01 1 113231495 113231495 G A MOV10 Intron 0.52 TCGA-BR-A4QL-01 1 114225544 114225544 G A MAGI3 Silent p.S1118S 0.25 TCGA-BR-A4QL-01 1 114442339 114442339 A - AP4B1 Intron 0.67 TCGA-BR-A4QL-01 1 115215729 115215729 T - AMPD1 3'UTR 0.50 TCGA-BR-A4QL-01 1 116534699 116534699 G A SLC22A15 Silent p.T45T 0.49 TCGA-BR-A4QL-01 1 117150572 117150572 A G IGSF3 Missense_Mutation p.L405P 0.39 deleterious(0.03) possibly_damaging(0.781) TCGA-BR-A4QL-01 1 117150721 117150721 G A IGSF3 Silent p.S355S 0.33 TCGA-BR-A4QL-01 1 117150811 117150811 G A IGSF3 Silent p.I325I 0.58 TCGA-BR-A4QL-01 1 11766419 11766419 G A DRAXIN Missense_Mutation p.R35Q 0.35 tolerated(0.22) benign(0.016) TCGA-BR-A4QL-01 1 118567980 118567980 G - SPAG17 Frame_Shift_Del p.Q1264Rfs*3 0.44 TCGA-BR-A4QL-01 1 11900199 11900199 G C CLCN6 Splice_Site p.X844_splice 0.38 TCGA-BR-A4QL-01 1 119923812 119923812 G A HAO2 Missense_Mutation p.R35Q 0.37 deleterious(0.01) benign(0.059) TCGA-BR-A4QL-01 1 120302555 120302555 C T HMGCS2 Missense_Mutation p.R206H 0.42 deleterious(0.03) benign(0.251) TCGA-BR-A4QL-01 1 120539712 120539712 C T NOTCH2 Missense_Mutation p.S220N 0.37 tolerated(0.52) benign(0.026) TCGA-BR-A4QL-01 1 12359286 12359286 C T VPS13D Missense_Mutation p.R2021W 0.36 probably_damaging(0.989) TCGA-BR-A4QL-01 1 12401935 12401935 C T VPS13D Missense_Mutation p.P2909S 0.35 probably_damaging(0.996) TCGA-BR-A4QL-01 1 1273434 1273434 G - DVL1 Frame_Shift_Del p.P521Hfs*128 0.34 TCGA-BR-A4QL-01 1 1290110 1290110 G - MXRA8 Frame_Shift_Del p.R301Gfs*107 0.38 TCGA-BR-A4QL-01 1 1290355 1290355 G A MXRA8 Missense_Mutation p.A219V 0.36 deleterious(0.02) probably_damaging(0.996) TCGA-BR-A4QL-01 1 12943044 12943044 C T PRAMEF4 Missense_Mutation p.V58M 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-BR-A4QL-01 1 1322694 1322694 G A CCNL2 Nonsense_Mutation p.R494* 0.40 TCGA-BR-A4QL-01 1 14075941 14075941 C T PRDM2 Missense_Mutation p.A157V 0.26 benign(0.167) TCGA-BR-A4QL-01 1 144877213 144877213 T - PDE4DIP Frame_Shift_Del p.I1492Yfs*19 0.20 TCGA-BR-A4QL-01 1 144952173 144952173 C T PDE4DIP Intron 0.12 TCGA-BR-A4QL-01 1 145581207 145581207 T C PIAS3 Silent p.P312P 0.35 TCGA-BR-A4QL-01 1 147096166 147096166 C T BCL9 Silent p.T1229T 0.33 TCGA-BR-A4QL-01 1 147230552 147230552 G - GJA5 Frame_Shift_Del p.D266Tfs*118 0.30 TCGA-BR-A4QL-01 1 149882489 149882489 C G SV2A Missense_Mutation p.E282Q 0.29 deleterious(0) probably_damaging(0.996) TCGA-BR-A4QL-01 1 150525976 150525976 G A ADAMTSL4 Missense_Mutation p.R170Q 0.31 deleterious(0.03) benign(0.44) TCGA-BR-A4QL-01 1 151261988 151261988 A - ZNF687 Frame_Shift_Del p.R871Gfs*29 0.34 TCGA-BR-A4QL-01 1 151265325 151265325 G A PI4KB 3'UTR 0.36 TCGA-BR-A4QL-01 1 151397495 151397495 C T POGZ Missense_Mutation p.R374Q 0.42 deleterious(0.02) probably_damaging(0.98) TCGA-BR-A4QL-01 1 151994944 151994944 C T NBPF18P RNA 0.36 TCGA-BR-A4QL-01 1 152283170 152283170 T G FLG Missense_Mutation p.S1398R 0.41 possibly_damaging(0.637) TCGA-BR-A4QL-01 1 152285339 152285339 C A FLG Missense_Mutation p.D675Y 0.38 probably_damaging(0.974) TCGA-BR-A4QL-01 1 152488062 152488062 G A CRCT1 Missense_Mutation p.R68H 0.50 unknown(0) TCGA-BR-A4QL-01 1 152760038 152760038 A G LCE1E Missense_Mutation p.H88R 0.11 tolerated_low_confidence(0.63) unknown(0) TCGA-BR-A4QL-01 1 153640491 153640491 T C ILF2 Silent p.P92P 0.35 TCGA-BR-A4QL-01 1 153906026 153906026 G - DENND4B Frame_Shift_Del p.P1088Qfs*42 0.27 TCGA-BR-A4QL-01 1 154302929 154302929 C T ATP8B2 Missense_Mutation p.A63V 0.36 tolerated(0.06) benign(0.436) TCGA-BR-A4QL-01 1 154461771 154461771 G T SHE Silent p.P260P 0.41 TCGA-BR-A4QL-01 1 154544057 154544057 T C CHRNB2 Missense_Mutation p.I253T 0.43 deleterious(0.02) benign(0.127) TCGA-BR-A4QL-01 1 155006137 155006137 C - DCST2 Frame_Shift_Del p.G14Efs*23 0.32 TCGA-BR-A4QL-01 1 155015874 155015874 G A DCST1 Missense_Mutation p.R354H 0.27 tolerated(1) benign(0) TCGA-BR-A4QL-01 1 155041446 155041446 G A EFNA4 Intron 0.37 TCGA-BR-A4QL-01 1 155160514 155160514 C T MUC1 Missense_Mutation p.G305D 0.37 tolerated(1) benign(0.002) TCGA-BR-A4QL-01 1 155172646 155172646 G - THBS3 Frame_Shift_Del p.P305Lfs*181 0.30 TCGA-BR-A4QL-01 1 155224231 155224232 - C FAM189B Frame_Shift_Ins p.V81Gfs*29 0.35 TCGA-BR-A4QL-01 1 155265256 155265256 G A PKLR Missense_Mutation p.P160L 0.57 deleterious(0) probably_damaging(0.999) TCGA-BR-A4QL-01 1 155291076 155291076 C - RUSC1 Intron 0.30 TCGA-BR-A4QL-01 1 155296779 155296779 G A RUSC1 Missense_Mutation p.R757H 0.39 tolerated(0.21) benign(0.002) TCGA-BR-A4QL-01 1 155296883 155296883 G - RUSC1 Frame_Shift_Del p.G793Afs*10 0.31 TCGA-BR-A4QL-01 1 155448107 155448107 T G ASH1L Missense_Mutation p.R1518S 0.44 deleterious_low_confidence(0.01) probably_damaging(0.93) TCGA-BR-A4QL-01 1 156132858 156132858 C T SEMA4A Silent p.G369G 0.27 TCGA-BR-A4QL-01 1 156347148 156347148 C A RHBG Missense_Mutation p.L82M 0.36 deleterious(0.04) probably_damaging(0.986) TCGA-BR-A4QL-01 1 156352536 156352536 C T RHBG Intron 0.36 TCGA-BR-A4QL-01 1 156642804 156642804 G - NES Frame_Shift_Del p.T393Hfs*9 0.35 TCGA-BR-A4QL-01 1 15755104 15755104 G A EFHD2 Missense_Mutation p.V203M 0.13 tolerated(0.11) benign(0.037) TCGA-BR-A4QL-01 1 157801593 157801593 C A CD5L 3'UTR 0.36 TCGA-BR-A4QL-01 1 158262642 158262642 C T CD1C Silent p.G289G 0.40 TCGA-BR-A4QL-01 1 158670411 158670411 T C OR6K2 Missense_Mutation p.E11G 0.31 tolerated(0.09) benign(0.104) TCGA-BR-A4QL-01 1 159032495 159032518 TTGGCCTTAATAACCTGGATGGAG GGCCTTAATAACCTGGATGGAGA AIM2 Splice_Site p.X336_splice 0.09 TCGA-BR-A4QL-01 1 159683558 159683558 A C CRP Silent p.T144T 0.39 TCGA-BR-A4QL-01 1 160098557 160098557 C T ATP1A2 Missense_Mutation p.T378I 0.32 deleterious(0) probably_damaging(0.997) TCGA-BR-A4QL-01 1 16011067 16011067 A G PLEKHM2 Missense_Mutation p.E5G 0.32 deleterious(0.01) benign(0.034) TCGA-BR-A4QL-01 1 160275305 160275305 G A COPA Missense_Mutation p.R538C 0.41 deleterious(0) possibly_damaging(0.828) TCGA-BR-A4QL-01 1 160313199 160313199 G - NCSTN Frame_Shift_Del p.G6Vfs*22 0.22 TCGA-BR-A4QL-01 1 16052022 16052022 C T PLEKHM2 Missense_Mutation p.T308M 0.50 deleterious_low_confidence(0.01) possibly_damaging(0.507) TCGA-BR-A4QL-01 1 16053733 16053733 C T PLEKHM2 Missense_Mutation p.S389F 0.55 tolerated_low_confidence(0.06) possibly_damaging(0.498) TCGA-BR-A4QL-01 1 161134660 161134660 A - USP21 Frame_Shift_Del p.S476Vfs*3 0.19 TCGA-BR-A4QL-01 1 161166115 161166115 G - ADAMTS4 Intron 0.28 TCGA-BR-A4QL-01 1 161682964 161682964 C T FCRLA Missense_Mutation p.P315S 0.36 tolerated(0.19) benign(0.391) TCGA-BR-A4QL-01 1 165737430 165737430 T - TMCO1 Frame_Shift_Del p.K100Nfs*9 0.31 TCGA-BR-A4QL-01 1 16583174 16583174 G A FBXO42 Missense_Mutation p.P195S 0.33 tolerated(0.1) probably_damaging(0.997) TCGA-BR-A4QL-01 1 166039361 166039361 T C FAM78B 3'UTR 0.32 TCGA-BR-A4QL-01 1 166135339 166135339 G A FAM78B Silent p.F49F 0.22 TCGA-BR-A4QL-01 1 167839514 167839514 C A ADCY10 Missense_Mutation p.A533S 0.37 tolerated(0.14) benign(0.05) TCGA-BR-A4QL-01 1 1685501 1685501 C T NADK Missense_Mutation p.V509I 0.37 deleterious(0.01) possibly_damaging(0.574) TCGA-BR-A4QL-01 1 169076064 169076064 C T ATP1B1 5'UTR 0.26 TCGA-BR-A4QL-01 1 16914226 16914226 G A NBPF1 Missense_Mutation p.A187V 0.17 tolerated(0.33) possibly_damaging(0.682) TCGA-BR-A4QL-01 1 169366580 169366580 T - CCDC181 Frame_Shift_Del p.K421Sfs*6 0.43 TCGA-BR-A4QL-01 1 169822720 169822720 A G C1orf112 3'UTR 0.53 TCGA-BR-A4QL-01 1 17256811 17256811 G A CROCC Missense_Mutation p.A218T 0.25 possibly_damaging(0.766) TCGA-BR-A4QL-01 1 177937055 177937056 TT - SEC16B Frame_Shift_Del p.K21Gfs*66 0.27 TCGA-BR-A4QL-01 1 179304653 179304653 T - SOAT1 Frame_Shift_Del p.F65Lfs*2 0.29 TCGA-BR-A4QL-01 1 179965804 179965804 G A CEP350 Missense_Mutation p.R171Q 0.13 benign(0.015) TCGA-BR-A4QL-01 1 180243343 180243343 G A LHX4 Missense_Mutation p.G268S 0.38 tolerated(0.43) benign(0.03) TCGA-BR-A4QL-01 1 181706764 181706764 G A CACNA1E Missense_Mutation p.V1176I 0.42 tolerated(0.07) benign(0.369) TCGA-BR-A4QL-01 1 182922237 182922237 G A SHCBP1L Missense_Mutation p.A11V 0.60 tolerated_low_confidence(0.15) benign(0.001) TCGA-BR-A4QL-01 1 184764591 184764591 G A FAM129A Silent p.S769S 0.40 TCGA-BR-A4QL-01 1 18809819 18809819 A G KLHDC7A 3'UTR 0.41 TCGA-BR-A4QL-01 1 19062247 19062247 G A PAX7 Missense_Mutation p.R426Q 0.40 deleterious_low_confidence(0.05) probably_damaging(0.992) TCGA-BR-A4QL-01 1 193104571 193104571 C T CDC73 Nonsense_Mutation p.R120* 0.33 TCGA-BR-A4QL-01 1 198608385 198608385 G A PTPRC 5'UTR 0.34 TCGA-BR-A4QL-01 1 201042762 201042762 G A CACNA1S Missense_Mutation p.P691L 0.40 deleterious(0.02) possibly_damaging(0.873) TCGA-BR-A4QL-01 1 201047120 201047120 G A CACNA1S Silent p.F502F 0.42 TCGA-BR-A4QL-01 1 201063104 201063104 C T CACNA1S Missense_Mutation p.A102T 0.38 deleterious(0.05) benign(0.025) TCGA-BR-A4QL-01 1 201966518 201966518 C - RNPEP Frame_Shift_Del p.C311Afs*3 0.30 TCGA-BR-A4QL-01 1 202096944 202096944 C A GPR37L1 Missense_Mutation p.L236M 0.06 tolerated(0.08) benign(0.309) TCGA-BR-A4QL-01 1 202128509 202128510 - C PTPN7 Frame_Shift_Ins p.R113Afs*21 0.34 TCGA-BR-A4QL-01 1 204210890 204210891 - G PLEKHA6 Frame_Shift_Ins p.L742Pfs*39 0.30 TCGA-BR-A4QL-01 1 204438269 204438269 C T PIK3C2B Missense_Mutation p.R221H 0.36 tolerated_low_confidence(0.49) benign(0) TCGA-BR-A4QL-01 1 204951100 204951100 G A NFASC Missense_Mutation p.G808R 0.20 deleterious(0) probably_damaging(1) TCGA-BR-A4QL-01 1 207109149 207109149 G A PIGR Missense_Mutation p.R354C 0.28 deleterious(0.03) benign(0.4) TCGA-BR-A4QL-01 1 20810079 20810079 T - CAMK2N1 3'UTR 0.36 TCGA-BR-A4QL-01 1 209776581 209776581 A G CAMK1G Missense_Mutation p.T82A 0.34 tolerated(1) probably_damaging(0.991) TCGA-BR-A4QL-01 1 21076290 21076290 G A HP1BP3 Missense_Mutation p.P356L 0.33 deleterious(0) probably_damaging(0.999) TCGA-BR-A4QL-01 1 211486067 211486067 C T RCOR3 Missense_Mutation p.R361C 0.35 deleterious(0) probably_damaging(0.924) TCGA-BR-A4QL-01 1 21191619 21191619 G A EIF4G3 Missense_Mutation p.A870V 0.42 deleterious(0.02) probably_damaging(0.93) TCGA-BR-A4QL-01 1 211923141 211923141 T - LPGAT1 3'UTR 0.50 TCGA-BR-A4QL-01 1 212792490 212792490 G A ATF3 Intron 0.48 TCGA-BR-A4QL-01 1 213032160 213032160 C T FLVCR1 Silent p.A122A 0.42 TCGA-BR-A4QL-01 1 215747171 215747171 T - KCTD3 Frame_Shift_Del p.S45Pfs*4 0.40 TCGA-BR-A4QL-01 1 21902394 21902394 C - ALPL Frame_Shift_Del p.R391Vfs*12 0.29 TCGA-BR-A4QL-01 1 21929366 21929366 G A RAP1GAP Missense_Mutation p.S554L 0.43 deleterious(0) benign(0.294) TCGA-BR-A4QL-01 1 220195819 220195819 C T EPRS Missense_Mutation p.G329R 0.29 deleterious(0) probably_damaging(0.986) TCGA-BR-A4QL-01 1 220313568 220313568 G C IARS2 Missense_Mutation p.R784P 0.29 deleterious(0.02) possibly_damaging(0.669) TCGA-BR-A4QL-01 1 221912920 221912920 G A DUSP10 Missense_Mutation p.A56V 0.26 deleterious_low_confidence(0.03) benign(0.17) TCGA-BR-A4QL-01 1 222713534 222713534 C T HHIPL2 Missense_Mutation p.R423H 0.07 deleterious(0) probably_damaging(1) TCGA-BR-A4QL-01 1 222794552 222794552 G A MIA3 Missense_Mutation p.R62H 0.29 deleterious(0.01) probably_damaging(1) TCGA-BR-A4QL-01 1 223284234 223284234 G C TLR5 Missense_Mutation p.H714D 0.36 deleterious(0) possibly_damaging(0.493) TCGA-BR-A4QL-01 1 225971006 225971006 G A SRP9 Missense_Mutation p.R26H 0.54 deleterious(0.02) probably_damaging(0.924) TCGA-BR-A4QL-01 1 228210547 228210547 G A WNT3A Missense_Mutation p.R84H 0.32 deleterious(0) probably_damaging(1) TCGA-BR-A4QL-01 1 228481946 228481946 C T OBSCN Missense_Mutation p.P4171L 0.41 probably_damaging(0.999) TCGA-BR-A4QL-01 1 22925427 22925427 C T EPHA8 Nonsense_Mutation p.R759* 0.27 TCGA-BR-A4QL-01 1 229568141 229568141 G A ACTA1 Silent p.N164N 0.31 TCGA-BR-A4QL-01 1 229599297 229599297 G C NUP133 Missense_Mutation p.A893G 0.28 deleterious(0.01) possibly_damaging(0.844) TCGA-BR-A4QL-01 1 230486757 230486757 G A PGBD5 Missense_Mutation p.R212W 0.31 deleterious(0) benign(0.302) TCGA-BR-A4QL-01 1 230798959 230798959 A - COG2 Frame_Shift_Del p.K127Rfs*5 0.32 TCGA-BR-A4QL-01 1 233231580 233231580 G A PCNXL2 Silent p.F1289F 0.46 TCGA-BR-A4QL-01 1 234527354 234527354 T A TARBP1 Missense_Mutation p.Q1612L 0.49 deleterious(0.01) benign(0.104) TCGA-BR-A4QL-01 1 234563382 234563382 T - TARBP1 Frame_Shift_Del p.N1064Ifs*30 0.25 TCGA-BR-A4QL-01 1 235922628 235922631 ACAA - LYST Frame_Shift_Del p.C2175Kfs*55 0.30 TCGA-BR-A4QL-01 1 23782638 23782638 C T ASAP3 Missense_Mutation p.R60Q 0.48 deleterious(0) possibly_damaging(0.769) TCGA-BR-A4QL-01 1 240601362 240601362 T - FMN2 Frame_Shift_Del p.L1639Wfs*9 0.25 TCGA-BR-A4QL-01 1 24121097 24121097 G A LYPLA2 Intron 0.35 TCGA-BR-A4QL-01 1 241672068 241672068 A G FH Silent p.F191F 0.37 TCGA-BR-A4QL-01 1 24485550 24485550 G A IFNLR1 Missense_Mutation p.R265W 0.37 tolerated(0.15) benign(0.003) TCGA-BR-A4QL-01 1 246923498 246923499 - T SCCPDH Frame_Shift_Ins p.S322Ffs*11 0.28 TCGA-BR-A4QL-01 1 247473056 247473056 G A ZNF496 Silent p.R279R 0.44 TCGA-BR-A4QL-01 1 247486457 247486457 G - ZNF496 Frame_Shift_Del p.P217Rfs*10 0.30 TCGA-BR-A4QL-01 1 248436550 248436550 G T OR2T33 Missense_Mutation p.D189E 0.15 deleterious(0.01) possibly_damaging(0.803) TCGA-BR-A4QL-01 1 248636988 248636988 G C OR2T3 Missense_Mutation p.A113P 0.37 tolerated(0.19) possibly_damaging(0.77) TCGA-BR-A4QL-01 1 248756419 248756419 A G OR2T10 Silent p.S217S 0.14 TCGA-BR-A4QL-01 1 2526797 2526797 G A MMEL1 Missense_Mutation p.A501V 0.41 deleterious(0.03) probably_damaging(0.999) TCGA-BR-A4QL-01 1 26648679 26648679 C T AIM1L Missense_Mutation p.E751K 0.44 tolerated(0.1) possibly_damaging(0.574) TCGA-BR-A4QL-01 1 26691260 26691260 G A ZNF683 Silent p.A259A 0.33 TCGA-BR-A4QL-01 1 26900720 26900720 G A RPS6KA1 3'UTR 0.36 TCGA-BR-A4QL-01 1 27056057 27056058 - A ARID1A Intron 0.40 TCGA-BR-A4QL-01 1 27058097 27058097 T C ARID1A Splice_Site p.X601_splice 0.40 TCGA-BR-A4QL-01 1 27428997 27428997 G A SLC9A1 Missense_Mutation p.R567C 0.43 deleterious(0.03) probably_damaging(0.972) TCGA-BR-A4QL-01 1 28864477 28864477 C T RCC1 Silent p.G439G 0.38 TCGA-BR-A4QL-01 1 29586063 29586063 G A PTPRU Missense_Mutation p.R221H 0.40 tolerated(0.13) benign(0) TCGA-BR-A4QL-01 1 29644433 29644433 C T PTPRU Silent p.D1239D 0.33 TCGA-BR-A4QL-01 1 32628102 32628102 C T KPNA6 Silent p.C296C 0.40 TCGA-BR-A4QL-01 1 32655736 32655736 C T TXLNA Silent p.D283D 0.40 TCGA-BR-A4QL-01 1 32658000 32658000 C T TXLNA Missense_Mutation p.A351V 0.41 tolerated(0.1) possibly_damaging(0.739) TCGA-BR-A4QL-01 1 32829406 32829406 T C TSSK3 Missense_Mutation p.V119A 0.40 tolerated(1) probably_damaging(0.987) TCGA-BR-A4QL-01 1 33236614 33236614 A T KIAA1522 Nonsense_Mutation p.K612* 0.43 TCGA-BR-A4QL-01 1 33236735 33236735 C - KIAA1522 Frame_Shift_Del p.L654Wfs*34 0.28 TCGA-BR-A4QL-01 1 33563625 33563625 C T ADC Intron 0.50 TCGA-BR-A4QL-01 1 36384666 36384666 G A AGO1 Missense_Mutation p.R759Q 0.45 deleterious(0) probably_damaging(0.998) TCGA-BR-A4QL-01 1 36636750 36636750 C T MAP7D1 Silent p.V75V 0.43 TCGA-BR-A4QL-01 1 36785787 36785787 C T SH3D21 Missense_Mutation p.S508L 0.44 tolerated(0.26) benign(0.006) TCGA-BR-A4QL-01 1 36921447 36921447 C T MRPS15 Missense_Mutation p.R239Q 0.44 tolerated(1) benign(0) TCGA-BR-A4QL-01 1 36934824 36934824 G A CSF3R Silent p.I503I 0.46 TCGA-BR-A4QL-01 1 38227453 38227453 G A EPHA10 Silent p.D158D 0.42 TCGA-BR-A4QL-01 1 38288281 38288281 G T MTF1 Missense_Mutation p.L427I 0.39 tolerated(1) benign(0.001) TCGA-BR-A4QL-01 1 40546109 40546109 C T PPT1 Missense_Mutation p.R196H 0.35 deleterious(0.03) possibly_damaging(0.747) TCGA-BR-A4QL-01 1 41467918 41467919 - T CTPS1 Frame_Shift_Ins p.L396Ffs*13 0.33 TCGA-BR-A4QL-01 1 42047178 42047178 T A HIVEP3 Silent p.G1097G 0.11 TCGA-BR-A4QL-01 1 43831048 43831048 C T ELOVL1 Splice_Site p.X16_splice 0.62 TCGA-BR-A4QL-01 1 44202014 44202014 G A ST3GAL3 Silent p.A27A 0.48 TCGA-BR-A4QL-01 1 44432189 44432189 G - IPO13 Intron 0.29 TCGA-BR-A4QL-01 1 45101634 45101634 C T RNF220 Intron 0.32 TCGA-BR-A4QL-01 1 45226082 45226082 G A KIF2C Missense_Mutation p.A500T 0.49 deleterious(0) benign(0.101) TCGA-BR-A4QL-01 1 46871370 46871370 C - FAAH Frame_Shift_Del p.L232Wfs*3 0.37 TCGA-BR-A4QL-01 1 47024370 47024370 C A MKNK1 Missense_Mutation p.E425D 0.40 tolerated(0.58) benign(0.013) TCGA-BR-A4QL-01 1 47078650 47078650 G A MOB3C Missense_Mutation p.P167L 0.38 deleterious(0.03) benign(0.254) TCGA-BR-A4QL-01 1 47685538 47685538 C T TAL1 Missense_Mutation p.V284M 0.30 tolerated(0.73) benign(0.026) TCGA-BR-A4QL-01 1 4829964 4829964 T C AJAP1 Missense_Mutation p.I294T 0.36 deleterious(0) benign(0.015) TCGA-BR-A4QL-01 1 54694479 54694479 C T SSBP3 Silent p.S316S 0.35 TCGA-BR-A4QL-01 1 56962089 56962089 T - PPAP2B 3'UTR 0.55 TCGA-BR-A4QL-01 1 57169680 57169680 C T PRKAA2 Silent p.Y275Y 0.39 TCGA-BR-A4QL-01 1 57258264 57258264 A G C1orf168 Silent p.L74L 0.42 TCGA-BR-A4QL-01 1 57480759 57480759 G A DAB1 Missense_Mutation p.T414M 0.25 tolerated(1) benign(0.001) TCGA-BR-A4QL-01 1 59978070 59978070 C T FGGY Missense_Mutation p.A253V 0.45 tolerated(0.19) probably_damaging(0.972) TCGA-BR-A4QL-01 1 60314140 60314140 A - HOOK1 Frame_Shift_Del p.A364Qfs*8 0.22 TCGA-BR-A4QL-01 1 60491137 60491137 G A C1orf87 Silent p.L355L 0.38 TCGA-BR-A4QL-01 1 6209392 6209392 C T CHD5 Missense_Mutation p.D359N 0.31 deleterious(0) probably_damaging(0.99) TCGA-BR-A4QL-01 1 6257785 6257785 T - RPL22 Frame_Shift_Del p.K15Rfs*5 0.47 TCGA-BR-A4QL-01 1 62740426 62740427 - G KANK4 Frame_Shift_Ins p.Q117Pfs*8 0.34 TCGA-BR-A4QL-01 1 62961311 62961311 A T DOCK7 Missense_Mutation p.D1624E 0.25 deleterious(0) probably_damaging(0.991) TCGA-BR-A4QL-01 1 63876980 63876980 A T ALG6 Nonsense_Mutation p.K220* 0.37 TCGA-BR-A4QL-01 1 64027499 64027499 G T EFCAB7 Missense_Mutation p.G490C 0.36 deleterious(0) probably_damaging(1) TCGA-BR-A4QL-01 1 6521693 6521693 C T TNFRSF25 Missense_Mutation p.R361H 0.43 deleterious(0) probably_damaging(0.999) TCGA-BR-A4QL-01 1 6525249 6525249 C T TNFRSF25 Missense_Mutation p.C65Y 0.43 deleterious(0.02) probably_damaging(0.916) TCGA-BR-A4QL-01 1 65296646 65296647 - A RAVER2 Frame_Shift_Ins p.K675Efs*7 0.25 TCGA-BR-A4QL-01 1 6605171 6605171 T - NOL9 Frame_Shift_Del p.R272Gfs*6 0.30 TCGA-BR-A4QL-01 1 6659214 6659214 G A KLHL21 Silent p.C440C 0.34 TCGA-BR-A4QL-01 1 67861595 67861595 C T IL12RB2 Silent p.N804N 0.39 TCGA-BR-A4QL-01 1 68697997 68697997 T C WLS 5'UTR 0.24 TCGA-BR-A4QL-01 1 70504693 70504693 A - LRRC7 Frame_Shift_Del p.V1027Sfs*16 0.36 TCGA-BR-A4QL-01 1 71544212 71544212 C - ZRANB2 Frame_Shift_Del p.G49Afs*4 0.31 TCGA-BR-A4QL-01 1 74649219 74649219 G A LRRIQ3 Silent p.I50I 0.38 TCGA-BR-A4QL-01 1 76779524 76779524 C T ST6GALNAC3 Missense_Mutation p.A18V 0.34 benign(0.001) TCGA-BR-A4QL-01 1 78189100 78189100 T - USP33 Frame_Shift_Del p.K466Nfs*25 0.27 TCGA-BR-A4QL-01 1 7887206 7887206 G A PER3 Silent p.S731S 0.59 TCGA-BR-A4QL-01 1 79102859 79102859 A G IFI44L Missense_Mutation p.K340R 0.38 tolerated(0.09) probably_damaging(0.967) TCGA-BR-A4QL-01 1 8390709 8390709 G A SLC45A1 Missense_Mutation p.D386N 0.32 tolerated(0.26) benign(0.005) TCGA-BR-A4QL-01 1 84639014 84639014 C T PRKACB Intron 0.33 TCGA-BR-A4QL-01 1 86965769 86965770 - T CLCA1 3'UTR 0.33 TCGA-BR-A4QL-01 1 89206848 89206848 A - PKN2 Frame_Shift_Del p.S78Vfs*5 0.40 TCGA-BR-A4QL-01 1 9075181 9075181 C T SLC2A7 Missense_Mutation p.R237Q 0.43 tolerated(0.15) benign(0.127) TCGA-BR-A4QL-01 1 92177814 92177814 G - TGFBR3 Frame_Shift_Del p.Q718Rfs*20 0.24 TCGA-BR-A4QL-01 1 92178028 92178028 G A TGFBR3 Silent p.N646N 0.40 TCGA-BR-A4QL-01 1 93202119 93202119 C T EVI5 Silent p.S39S 0.36 TCGA-BR-A4QL-01 1 93599728 93599728 C A MTF2 Nonsense_Mutation p.S467* 0.46 TCGA-BR-A4QL-01 20 10629262 10629262 A G JAG1 Missense_Mutation p.C502R 0.37 deleterious(0) probably_damaging(0.999) TCGA-BR-A4QL-01 20 13279773 13279773 C T ISM1 Silent p.P354P 0.22 TCGA-BR-A4QL-01 20 1559235 1559235 G - RP4-576H24.4 Frame_Shift_Del p.P60Lfs*17 0.38 TCGA-BR-A4QL-01 20 17581420 17581420 T - DSTN Frame_Shift_Del p.Y16Mfs*3 0.31 TCGA-BR-A4QL-01 20 23346169 23346171 GAA - GZF1 In_Frame_Del p.K385del 0.37 TCGA-BR-A4QL-01 20 2384126 2384126 C - TGM6 Frame_Shift_Del p.Q360Rfs*99 0.25 TCGA-BR-A4QL-01 20 25187894 25187894 G - ENTPD6 Frame_Shift_Del p.A81Pfs*50 0.24 TCGA-BR-A4QL-01 20 25442243 25442243 T C NINL Missense_Mutation p.E1204G 0.47 deleterious(0) probably_damaging(0.996) TCGA-BR-A4QL-01 20 29960908 29960908 G T DEFB118 Missense_Mutation p.V103F 0.49 tolerated(0.54) possibly_damaging(0.804) TCGA-BR-A4QL-01 20 31805219 31805219 G - BPIFA3 5'UTR 0.47 TCGA-BR-A4QL-01 20 32000508 32000508 G A SNTA1 Missense_Mutation p.A261V 0.55 deleterious(0.01) benign(0.065) TCGA-BR-A4QL-01 20 3211445 3211445 G A SLC4A11 Silent p.Y448Y 0.35 TCGA-BR-A4QL-01 20 34092805 34092805 A C CEP250 Missense_Mutation p.E2203A 0.29 possibly_damaging(0.686) TCGA-BR-A4QL-01 20 35127677 35127677 G A DLGAP4 Silent p.S681S 0.46 TCGA-BR-A4QL-01 20 35444330 35444330 G A SOGA1 Silent p.C505C 0.44 TCGA-BR-A4QL-01 20 35444560 35444560 C T SOGA1 Missense_Mutation p.A429T 0.34 tolerated(0.16) benign(0.092) TCGA-BR-A4QL-01 20 36640541 36640541 T C TTI1 Missense_Mutation p.I560V 0.43 tolerated(0.4) benign(0.007) TCGA-BR-A4QL-01 20 3677231 3677231 A G SIGLEC1 Splice_Site p.X895_splice 0.07 TCGA-BR-A4QL-01 20 37536791 37536791 C T PPP1R16B Silent p.N383N 0.37 TCGA-BR-A4QL-01 20 39798904 39798904 G A PLCG1 Missense_Mutation p.A935T 0.34 tolerated(0.39) probably_damaging(0.999) TCGA-BR-A4QL-01 20 40045241 40045241 G A CHD6 Missense_Mutation p.A2158V 0.37 tolerated(0.25) benign(0.184) TCGA-BR-A4QL-01 20 43545401 43545401 C T PABPC1L Missense_Mutation p.A131V 0.32 tolerated(0.77) benign(0.002) TCGA-BR-A4QL-01 20 44515246 44515246 C T SPATA25 Silent p.A198A 0.43 TCGA-BR-A4QL-01 20 44527008 44527008 C T CTSA Silent p.G472G 0.31 TCGA-BR-A4QL-01 20 44598221 44598221 G - ZNF335 Frame_Shift_Del p.P104Qfs*49 0.25 TCGA-BR-A4QL-01 20 44639150 44639150 C T MMP9 Missense_Mutation p.R134W 0.43 deleterious(0.02) possibly_damaging(0.783) TCGA-BR-A4QL-01 20 44641102 44641102 G A MMP9 Missense_Mutation p.G404D 0.35 deleterious(0) probably_damaging(0.998) TCGA-BR-A4QL-01 20 44669091 44669091 G A SLC12A5 Missense_Mutation p.R254H 0.40 deleterious(0) probably_damaging(1) TCGA-BR-A4QL-01 20 44671923 44671923 T G SLC12A5 Missense_Mutation p.F423V 0.46 deleterious(0) probably_damaging(0.973) TCGA-BR-A4QL-01 20 44997547 44997547 C T ELMO2 Missense_Mutation p.A649T 0.30 deleterious(0) probably_damaging(0.952) TCGA-BR-A4QL-01 20 45017707 45017707 G T ELMO2 Silent p.L132L 0.34 TCGA-BR-A4QL-01 20 45354006 45354006 G A SLC2A10 Missense_Mutation p.A111T 0.40 deleterious(0) probably_damaging(0.956) TCGA-BR-A4QL-01 20 46295140 46295140 C T SULF2 Missense_Mutation p.A557T 0.34 tolerated(0.4) benign(0.005) TCGA-BR-A4QL-01 20 46307454 46307454 G T SULF2 Missense_Mutation p.L387I 0.30 deleterious(0.01) probably_damaging(0.955) TCGA-BR-A4QL-01 20 47605105 47605105 G T ARFGEF2 Missense_Mutation p.E813D 0.44 tolerated(0.23) benign(0.012) TCGA-BR-A4QL-01 20 48472053 48472053 C T SLC9A8 Silent p.P232P 0.40 TCGA-BR-A4QL-01 20 49196318 49196318 C T PTPN1 Nonsense_Mutation p.R315* 0.37 TCGA-BR-A4QL-01 20 49520470 49520470 T - ADNP Frame_Shift_Del p.I22Yfs*14 0.29 TCGA-BR-A4QL-01 20 54978930 54978930 T - CSTF1 3'UTR 0.43 TCGA-BR-A4QL-01 20 55093208 55093208 G A RTFDC1 Missense_Mutation p.A270T 0.38 tolerated(0.13) benign(0.097) TCGA-BR-A4QL-01 20 57246273 57246273 C T STX16 Nonsense_Mutation p.R238* 0.42 TCGA-BR-A4QL-01 20 57485424 57485424 C T GNAS Missense_Mutation p.R979W 0.32 deleterious(0) probably_damaging(0.998) TCGA-BR-A4QL-01 20 57766438 57766438 C T ZNF831 Missense_Mutation p.P122S 0.33 deleterious(0) probably_damaging(0.999) TCGA-BR-A4QL-01 20 60575303 60575303 T - TAF4 Frame_Shift_Del p.K888Nfs*4 0.31 TCGA-BR-A4QL-01 20 60887229 60887229 C T LAMA5 Silent p.P3168P 0.55 TCGA-BR-A4QL-01 20 61512527 61512528 TC - DIDO1 Frame_Shift_Del p.D1594Cfs*85 0.36 TCGA-BR-A4QL-01 20 61637728 61637728 G A BHLHE23 Silent p.N117N 0.59 TCGA-BR-A4QL-01 20 61941805 61941805 G A COL20A1 Missense_Mutation p.V446M 0.40 deleterious(0) probably_damaging(0.998) TCGA-BR-A4QL-01 20 61981737 61981737 G T CHRNA4 Silent p.T342T 0.05 TCGA-BR-A4QL-01 20 62560719 62560719 G A DNAJC5 Silent p.A54A 0.44 TCGA-BR-A4QL-01 20 62571561 62571561 G A UCKL1 Silent p.I503I 0.36 TCGA-BR-A4QL-01 20 62597786 62597786 C T ZNF512B Missense_Mutation p.V248I 0.31 tolerated_low_confidence(0.27) benign(0.01) TCGA-BR-A4QL-01 20 76799 76799 C T DEFB125 Missense_Mutation p.P71L 0.34 tolerated(0.17) benign(0.02) TCGA-BR-A4QL-01 21 10951271 10951271 T C TPTE Silent p.V147V 0.16 TCGA-BR-A4QL-01 21 10996060 10996060 G T TPTE RNA 0.23 TCGA-BR-A4QL-01 21 22370819 22370819 G T NCAM2 5'UTR 0.50 TCGA-BR-A4QL-01 21 27137032 27137032 C T GABPA Missense_Mutation p.A357V 0.34 deleterious(0) probably_damaging(0.999) TCGA-BR-A4QL-01 21 31710013 31710013 A G KRTAP27-1 5'Flank 0.49 TCGA-BR-A4QL-01 21 33074655 33074655 T - SCAF4 Frame_Shift_Del p.N120Mfs*25 0.35 TCGA-BR-A4QL-01 21 34058147 34058147 C A SYNJ1 Missense_Mutation p.K382N 0.05 tolerated(0.21) possibly_damaging(0.691) TCGA-BR-A4QL-01 21 34932536 34932536 C G SON Intron 0.41 TCGA-BR-A4QL-01 21 38444815 38444815 T - PIGP Frame_Shift_Del p.M25Wfs*21 0.34 TCGA-BR-A4QL-01 21 38997730 38997730 G A KCNJ6 Missense_Mutation p.R335W 0.34 deleterious(0) probably_damaging(0.999) TCGA-BR-A4QL-01 21 40627704 40627704 G A BRWD1 Missense_Mutation p.R708C 0.30 deleterious(0) possibly_damaging(0.65) TCGA-BR-A4QL-01 21 42824678 42824680 AGA - MX1 In_Frame_Del p.K548del 0.41 TCGA-BR-A4QL-01 21 43413803 43413803 T - ZBTB21 Frame_Shift_Del p.V135Cfs*3 0.36 TCGA-BR-A4QL-01 21 43508547 43508547 C T UMODL1 Silent p.D249D 0.25 TCGA-BR-A4QL-01 21 43702507 43702507 A G ABCG1 Missense_Mutation p.M238V 0.37 deleterious(0.02) benign(0.292) TCGA-BR-A4QL-01 21 45784127 45784127 G A TRPM2 Missense_Mutation p.D129N 0.28 deleterious(0.03) probably_damaging(0.998) TCGA-BR-A4QL-01 21 45833790 45833790 G A TRPM2 Silent p.P993P 0.39 TCGA-BR-A4QL-01 21 45924736 45924736 C A TSPEAR Nonsense_Mutation p.G595* 0.33 TCGA-BR-A4QL-01 21 45947323 45947323 C T TSPEAR Missense_Mutation p.R334H 0.46 tolerated(0.23) benign(0.255) TCGA-BR-A4QL-01 21 46057780 46057780 C A KRTAP10-10 Missense_Mutation p.P149H 0.39 deleterious(0) probably_damaging(0.99) TCGA-BR-A4QL-01 21 47333910 47333910 T A PCBP3 Missense_Mutation p.S216T 0.40 tolerated(0.26) benign(0.022) TCGA-BR-A4QL-01 22 19048366 19048366 G T DGCR2 Intron 0.39 TCGA-BR-A4QL-01 22 19344515 19344515 C T HIRA Missense_Mutation p.R765H 0.37 deleterious(0) probably_damaging(1) TCGA-BR-A4QL-01 22 19956139 19956139 C T COMT Silent p.H232H 0.39 TCGA-BR-A4QL-01 22 20759882 20759882 G A ZNF74 Missense_Mutation p.A187T 0.68 tolerated(0.99) benign(0.003) TCGA-BR-A4QL-01 22 20796462 20796462 C T KLHL22 Silent p.P601P 0.36 TCGA-BR-A4QL-01 22 21742894 21742894 G - RIMBP3B Frame_Shift_Del p.D1584Mfs*14 0.31 TCGA-BR-A4QL-01 22 21799658 21799658 G C HIC2 Silent p.R158R 0.47 TCGA-BR-A4QL-01 22 22569639 22569639 T C IGLV10-54 Silent p.L111L 0.67 TCGA-BR-A4QL-01 22 22735449 22735449 C T IGLV1-44 Missense_Mutation p.A29V 0.80 tolerated_low_confidence(0.83) benign(0.001) TCGA-BR-A4QL-01 22 24573647 24573647 C - CABIN1 Frame_Shift_Del p.L2129Cfs*44 0.26 TCGA-BR-A4QL-01 22 24911250 24911250 G A UPB1 Missense_Mutation p.G235R 0.41 deleterious(0) probably_damaging(1) TCGA-BR-A4QL-01 22 27008142 27008142 C T CRYBB1 Missense_Mutation p.E65K 0.76 deleterious(0) probably_damaging(0.963) TCGA-BR-A4QL-01 22 29707029 29707029 G - GAS2L1 3'UTR 0.38 TCGA-BR-A4QL-01 22 30690039 30690039 C T TBC1D10A Missense_Mutation p.A263T 0.41 deleterious(0.05) possibly_damaging(0.449) TCGA-BR-A4QL-01 22 30980630 30980630 G A PES1 Missense_Mutation p.P148L 0.48 deleterious(0) possibly_damaging(0.603) TCGA-BR-A4QL-01 22 31289120 31289120 C - OSBP2 Frame_Shift_Del p.S630Qfs*34 0.43 TCGA-BR-A4QL-01 22 31322775 31322776 CT - MORC2 3'UTR 0.34 TCGA-BR-A4QL-01 22 31501001 31501001 C T SELM Silent p.A131A 0.24 TCGA-BR-A4QL-01 22 35943100 35943100 G A RASD2 Missense_Mutation p.A82T 0.73 deleterious(0) probably_damaging(0.99) TCGA-BR-A4QL-01 22 37482393 37482393 G A TMPRSS6 Silent p.V310V 0.79 TCGA-BR-A4QL-01 22 37769104 37769104 G - ELFN2 3'UTR 0.78 TCGA-BR-A4QL-01 22 37769234 37769234 G A ELFN2 Missense_Mutation p.R781W 0.81 deleterious(0) probably_damaging(0.991) TCGA-BR-A4QL-01 22 37771065 37771065 G T ELFN2 Silent p.T170T 0.38 TCGA-BR-A4QL-01 22 38111795 38111795 A C TRIOBP Missense_Mutation p.E161A 0.25 tolerated_low_confidence(0.15) unknown(0) TCGA-BR-A4QL-01 22 38373922 38373922 G T SOX10 Missense_Mutation p.P217T 0.10 tolerated(0.19) benign(0.002) TCGA-BR-A4QL-01 22 38824088 38824088 C T KCNJ4 Missense_Mutation p.R17H 0.39 tolerated(0.55) benign(0.003) TCGA-BR-A4QL-01 22 39262729 39262729 G - CBX6 Frame_Shift_Del p.L242Wfs*2 0.33 TCGA-BR-A4QL-01 22 40055783 40055783 G A CACNA1I Missense_Mutation p.A844T 0.13 deleterious(0.01) benign(0.379) TCGA-BR-A4QL-01 22 41572350 41572350 C T EP300 Missense_Mutation p.R1627W 0.05 probably_damaging(0.999) TCGA-BR-A4QL-01 22 41650492 41650492 G A RANGAP1 Silent p.D360D 0.40 TCGA-BR-A4QL-01 22 41745305 41745305 G T ZC3H7B Missense_Mutation p.G650C 0.07 deleterious(0.01) benign(0.352) TCGA-BR-A4QL-01 22 41864625 41864625 G A PHF5A Silent p.C11C 0.70 TCGA-BR-A4QL-01 22 42988010 42988011 - T POLDIP3 Frame_Shift_Ins p.D325Gfs*8 0.46 TCGA-BR-A4QL-01 22 43089474 43089474 C T A4GALT Missense_Mutation p.V162M 0.26 tolerated(0.05) benign(0.161) TCGA-BR-A4QL-01 22 44004420 44004420 C - EFCAB6 Frame_Shift_Del p.A875Hfs*71 0.32 TCGA-BR-A4QL-01 22 45599828 45599828 G T KIAA0930 Silent p.V190V 0.08 TCGA-BR-A4QL-01 22 45719261 45719261 C T FAM118A Missense_Mutation p.R85W 0.28 deleterious(0) possibly_damaging(0.556) TCGA-BR-A4QL-01 22 46760452 46760452 G A CELSR1 Silent p.G2912G 0.41 TCGA-BR-A4QL-01 22 50315992 50315992 G T CRELD2 Nonsense_Mutation p.G214* 0.25 TCGA-BR-A4QL-01 22 50885769 50885769 G A SBF1 Silent p.D1855D 0.35 TCGA-BR-A4QL-01 2 100058920 100058920 C T REV1 Missense_Mutation p.G121E 0.36 deleterious(0) probably_damaging(1) TCGA-BR-A4QL-01 2 100266104 100266104 G A AFF3 Missense_Mutation p.R415C 0.43 deleterious(0) possibly_damaging(0.606) TCGA-BR-A4QL-01 2 101192912 101192912 G A PDCL3 Missense_Mutation p.R225Q 0.45 tolerated(0.17) benign(0.081) TCGA-BR-A4QL-01 2 101924991 101924991 C T RNF149 Silent p.L20L 0.48 TCGA-BR-A4QL-01 2 102641036 102641036 G A IL1R2 Missense_Mutation p.G265S 0.32 tolerated(0.6) benign(0.368) TCGA-BR-A4QL-01 2 106710415 106710415 A - UXS1 3'UTR 0.50 TCGA-BR-A4QL-01 2 108489198 108489198 A C RGPD4 Missense_Mutation p.S1580R 0.40 deleterious(0.02) possibly_damaging(0.467) TCGA-BR-A4QL-01 2 109381658 109381658 C T RANBP2 Nonsense_Mutation p.R1555* 0.40 TCGA-BR-A4QL-01 2 110015252 110015252 G A SH3RF3 Silent p.A384A 0.45 TCGA-BR-A4QL-01 2 11359113 11359113 G T ROCK2 Silent p.S433S 0.45 TCGA-BR-A4QL-01 2 120672766 120672767 - A PTPN4 Frame_Shift_Ins p.I261Nfs*4 0.26 TCGA-BR-A4QL-01 2 122514875 122514875 G A TSN Silent p.L42L 0.29 TCGA-BR-A4QL-01 2 122522936 122522936 A - TSN Frame_Shift_Del p.K228Nfs*20 0.29 TCGA-BR-A4QL-01 2 128394393 128394393 A G MYO7B Missense_Mutation p.T2052A 0.57 tolerated(0.1) benign(0.257) TCGA-BR-A4QL-01 2 129026306 129026306 C T HS6ST1 Silent p.P222P 0.33 TCGA-BR-A4QL-01 2 133427625 133427625 C T LYPD1 5'UTR 0.38 TCGA-BR-A4QL-01 2 136547367 136547367 A C LCT Silent p.A1779A 0.26 TCGA-BR-A4QL-01 2 144899478 144899478 G T GTDC1 Nonsense_Mutation p.Y164* 0.33 TCGA-BR-A4QL-01 2 14774272 14774273 - C FAM84A Frame_Shift_Ins p.C61Lfs*108 0.43 TCGA-BR-A4QL-01 2 148657041 148657041 A - ACVR2A Frame_Shift_Del p.D96Tfs*54 0.32 TCGA-BR-A4QL-01 2 149447829 149447829 A - EPC2 Frame_Shift_Del p.E70Rfs*39 0.40 TCGA-BR-A4QL-01 2 152324641 152324643 CTC - RIF1 In_Frame_Del p.P2244del 0.22 TCGA-BR-A4QL-01 2 152326345 152326345 A - RIF1 Frame_Shift_Del p.K2356Rfs*11 0.08 TCGA-BR-A4QL-01 2 157352618 157352618 T C AC011308.1 Splice_Site p.X8_splice 0.42 TCGA-BR-A4QL-01 2 15760382 15760382 C T DDX1 Silent p.S419S 0.29 TCGA-BR-A4QL-01 2 159077162 159077162 G A CCDC148 Missense_Mutation p.R439C 0.38 deleterious(0.03) probably_damaging(0.942) TCGA-BR-A4QL-01 2 160080864 160080864 G A TANC1 Missense_Mutation p.G1267E 0.39 deleterious(0) probably_damaging(1) TCGA-BR-A4QL-01 2 160667123 160667123 C T LY75-CD302 Missense_Mutation p.R1538Q 0.32 tolerated(1) benign(0) TCGA-BR-A4QL-01 2 16082314 16082314 C - MYCN Frame_Shift_Del p.P45Rfs*86 0.25 TCGA-BR-A4QL-01 2 162875265 162875265 G A DPP4 Missense_Mutation p.A465V 0.26 deleterious(0.01) possibly_damaging(0.672) TCGA-BR-A4QL-01 2 1652064 1652064 C T PXDN Missense_Mutation p.R1163Q 0.34 deleterious(0) probably_damaging(0.988) TCGA-BR-A4QL-01 2 166740436 166740436 C T TTC21B Silent p.A1184A 0.32 TCGA-BR-A4QL-01 2 166908335 166908335 G A SCN1A Silent p.S286S 0.39 TCGA-BR-A4QL-01 2 169699563 169699563 A - NOSTRIN Frame_Shift_Del p.N191Tfs*9 0.36 TCGA-BR-A4QL-01 2 170393848 170393848 T C FASTKD1 Missense_Mutation p.I693V 0.05 tolerated(0.61) benign(0.026) TCGA-BR-A4QL-01 2 172379172 172379172 C T CYBRD1 Silent p.G39G 0.27 TCGA-BR-A4QL-01 2 175962206 175962206 A T ATF2 Nonsense_Mutation p.L315* 0.32 TCGA-BR-A4QL-01 2 176947159 176947159 G A EVX2 Missense_Mutation p.S149L 0.42 tolerated(0.08) benign(0.359) TCGA-BR-A4QL-01 2 177017378 177017378 C T HOXD4 Missense_Mutation p.T159M 0.34 deleterious(0) probably_damaging(1) TCGA-BR-A4QL-01 2 177036848 177036848 C T HOXD3 Missense_Mutation p.P382L 0.36 deleterious(0.03) probably_damaging(0.977) TCGA-BR-A4QL-01 2 177054164 177054164 G T HOXD1 Missense_Mutation p.R212M 0.24 deleterious(0) probably_damaging(0.993) TCGA-BR-A4QL-01 2 178416830 178416830 T C TTC30B Missense_Mutation p.Q221R 0.27 deleterious(0.01) benign(0.001) TCGA-BR-A4QL-01 2 178482996 178482996 C - TTC30A Frame_Shift_Del p.G145Efs*64 0.09 TCGA-BR-A4QL-01 2 17899380 17899380 A G SMC6 Silent p.D352D 0.36 TCGA-BR-A4QL-01 2 179396497 179396497 G A TTN Missense_Mutation p.R34949C 0.40 TCGA-BR-A4QL-01 2 179436014 179436014 C T TTN Missense_Mutation p.E24949K 0.32 TCGA-BR-A4QL-01 2 179454179 179454179 T A TTN Missense_Mutation p.E20758V 0.39 TCGA-BR-A4QL-01 2 179463736 179463736 T C TTN Missense_Mutation p.M18901V 0.49 TCGA-BR-A4QL-01 2 179518593 179527114 2:179518593-179527114 - TTN large deletion p.X12330_splice 0.21 TCGA-BR-A4QL-01 2 1796190 1796190 T C MYT1L Missense_Mutation p.K1106R 0.26 tolerated(0.07) probably_damaging(0.999) TCGA-BR-A4QL-01 2 180348060 180348060 G A ZNF385B Silent p.S203S 0.40 TCGA-BR-A4QL-01 2 18112465 18112465 G T KCNS3 Missense_Mutation p.D64Y 0.45 deleterious(0) probably_damaging(0.959) TCGA-BR-A4QL-01 2 183011801 183011801 C T PDE1A 3'UTR 0.31 TCGA-BR-A4QL-01 2 185801480 185801480 A C ZNF804A Missense_Mutation p.I453L 0.40 tolerated(0.09) benign(0.026) TCGA-BR-A4QL-01 2 186678578 186678578 T - FSIP2 Frame_Shift_Del p.L6802Cfs*3 0.26 TCGA-BR-A4QL-01 2 187626790 187626790 T C FAM171B Missense_Mutation p.M574T 0.40 tolerated(0.43) benign(0.174) TCGA-BR-A4QL-01 2 197636558 197636558 A G GTF3C3 Missense_Mutation p.L725S 0.51 deleterious(0) probably_damaging(0.953) TCGA-BR-A4QL-01 2 198571099 198571099 C A MARS2 Missense_Mutation p.L324M 0.36 deleterious(0) probably_damaging(1) TCGA-BR-A4QL-01 2 200137060 200137060 C A SATB2 Missense_Mutation p.E692D 0.35 tolerated(0.12) benign(0.138) TCGA-BR-A4QL-01 2 202003593 202003593 G A CFLAR Intron 0.37 TCGA-BR-A4QL-01 2 202488987 202488987 G A TMEM237 Silent p.A406A 0.29 TCGA-BR-A4QL-01 2 206869880 206869883 AAGT - INO80D Frame_Shift_Del p.T765Lfs*4 0.30 TCGA-BR-A4QL-01 2 206872047 206872047 G A INO80D Missense_Mutation p.R627W 0.09 deleterious(0) probably_damaging(1) TCGA-BR-A4QL-01 2 207611098 207611098 C A MDH1B Missense_Mutation p.E423D 0.28 tolerated(0.06) benign(0.056) TCGA-BR-A4QL-01 2 208993062 208993062 G A CRYGC Silent p.C130C 0.30 TCGA-BR-A4QL-01 2 209010699 209010699 G A CRYGB Silent p.Y17Y 0.37 TCGA-BR-A4QL-01 2 210560785 210560785 C T MAP2 Silent p.T1297T 0.35 TCGA-BR-A4QL-01 2 211464228 211464228 G A CPS1 Missense_Mutation p.A504T 0.40 tolerated(0.37) benign(0.015) TCGA-BR-A4QL-01 2 21232207 21232207 T C APOB Silent p.K2511K 0.41 TCGA-BR-A4QL-01 2 215645975 215645975 T - BARD1 Frame_Shift_Del p.K208Rfs*4 0.31 TCGA-BR-A4QL-01 2 216177200 216177200 A - ATIC Intron 0.30 TCGA-BR-A4QL-01 2 216209520 216209520 C T ATIC Nonsense_Mutation p.R416* 0.43 TCGA-BR-A4QL-01 2 216286852 216286852 C T FN1 Missense_Mutation p.R503H 0.38 deleterious(0) probably_damaging(1) TCGA-BR-A4QL-01 2 217315647 217315647 C T SMARCAL1 Missense_Mutation p.R644W 0.31 deleterious(0) probably_damaging(1) TCGA-BR-A4QL-01 2 219028828 219028828 A G CXCR1 3'UTR 0.28 TCGA-BR-A4QL-01 2 219110150 219110152 AAG - ARPC2 In_Frame_Del p.E187del 0.50 TCGA-BR-A4QL-01 2 219362579 219362579 G A USP37 Missense_Mutation p.R387C 0.41 tolerated(0.3) benign(0.288) TCGA-BR-A4QL-01 2 219508052 219508052 G - ZNF142 Frame_Shift_Del p.Q1063Rfs*9 0.32 TCGA-BR-A4QL-01 2 219529162 219529162 C T RNF25 Missense_Mutation p.V300I 0.29 tolerated(0.09) benign(0.023) TCGA-BR-A4QL-01 2 220400033 220400033 G A ASIC4 Missense_Mutation p.E514K 0.41 deleterious(0.02) probably_damaging(0.96) TCGA-BR-A4QL-01 2 220412523 220412523 G - TMEM198 Frame_Shift_Del p.G156Afs*23 0.30 TCGA-BR-A4QL-01 2 220495067 220495067 C T SLC4A3 Silent p.D295D 0.27 TCGA-BR-A4QL-01 2 226516292 226516292 T C NYAP2 3'UTR 0.40 TCGA-BR-A4QL-01 2 226516453 226516453 T A NYAP2 3'UTR 0.57 TCGA-BR-A4QL-01 2 227660270 227660270 C - IRS1 Frame_Shift_Del p.G1062Afs*8 0.36 TCGA-BR-A4QL-01 2 228681853 228681853 C A CCL20 3'UTR 0.46 TCGA-BR-A4QL-01 2 228881735 228881735 T C SPHKAP Missense_Mutation p.S1279G 0.36 tolerated(0.07) benign(0.012) TCGA-BR-A4QL-01 2 233272672 233272672 G A ALPPL2 Missense_Mutation p.R198H 0.36 tolerated(0.14) benign(0.009) TCGA-BR-A4QL-01 2 233546345 233546345 G T EFHD1 Missense_Mutation p.E212D 0.40 deleterious(0) possibly_damaging(0.81) TCGA-BR-A4QL-01 2 234681073 234681073 C T UGT1A4 Silent p.D491D 0.38 TCGA-BR-A4QL-01 2 237028996 237028996 G A AGAP1 Missense_Mutation p.E759K 0.28 deleterious(0.04) possibly_damaging(0.539) TCGA-BR-A4QL-01 2 238449011 238449011 C T MLPH Silent p.R375R 0.17 TCGA-BR-A4QL-01 2 239013386 239013386 A C ESPNL Missense_Mutation p.K192T 0.21 tolerated(0.2) benign(0.21) TCGA-BR-A4QL-01 2 240056118 240056118 C T HDAC4 Missense_Mutation p.A373T 0.22 deleterious(0.02) benign(0.002) TCGA-BR-A4QL-01 2 241658494 241658494 C T KIF1A Missense_Mutation p.V1715M 0.42 deleterious(0) probably_damaging(0.988) TCGA-BR-A4QL-01 2 242066771 242066771 A G PASK Missense_Mutation p.V520A 0.39 tolerated(1) benign(0.002) TCGA-BR-A4QL-01 2 242196109 242196109 C T HDLBP Missense_Mutation p.R188H 0.40 tolerated(0.1) benign(0.333) TCGA-BR-A4QL-01 2 24290573 24290573 A - SF3B14 3'UTR 0.32 TCGA-BR-A4QL-01 2 25982513 25982517 TCCTA CCTT ASXL2 Splice_Site p.X259_splice 0.25 TCGA-BR-A4QL-01 2 26101090 26101090 A G ASXL2 Translation_Start_Site p.M1? 0.33 deleterious(0) possibly_damaging(0.599) TCGA-BR-A4QL-01 2 27302078 27302079 - C EMILIN1 Frame_Shift_Ins p.R51Pfs*23 0.41 TCGA-BR-A4QL-01 2 27360918 27360918 A G C2orf53 Missense_Mutation p.S94P 0.31 tolerated(0.16) probably_damaging(0.997) TCGA-BR-A4QL-01 2 27535561 27535563 TCT - MPV17 In_Frame_Del p.K88del 0.46 TCGA-BR-A4QL-01 2 27597016 27597016 G A SNX17 Missense_Mutation p.R166Q 0.37 tolerated(0.16) benign(0.024) TCGA-BR-A4QL-01 2 28627027 28627027 C T FOSL2 Silent p.N52N 0.11 TCGA-BR-A4QL-01 2 31483572 31483572 C T EHD3 Silent p.Y233Y 0.60 TCGA-BR-A4QL-01 2 32093439 32093439 C T MEMO1 Silent p.T295T 0.25 TCGA-BR-A4QL-01 2 32460605 32460605 C T NLRC4 Missense_Mutation p.A883T 0.07 tolerated(0.68) benign(0.001) TCGA-BR-A4QL-01 2 32626547 32626547 A T BIRC6 Missense_Mutation p.E425V 0.29 benign(0.446) TCGA-BR-A4QL-01 2 33813510 33813510 G A FAM98A Silent p.G138G 0.39 TCGA-BR-A4QL-01 2 3628430 3628430 G A RPS7 Silent p.T181T 0.42 TCGA-BR-A4QL-01 2 36739444 36739444 C T CRIM1 Missense_Mutation p.R563C 0.41 deleterious(0) probably_damaging(0.997) TCGA-BR-A4QL-01 2 3691383 3691383 C T COLEC11 Missense_Mutation p.A178V 0.36 tolerated(0.45) benign(0.005) TCGA-BR-A4QL-01 2 42282160 42282160 G T PKDCC Nonsense_Mutation p.G372* 0.30 TCGA-BR-A4QL-01 2 42909709 42909709 A G MTA3 Missense_Mutation p.N291D 0.62 tolerated(0.08) benign(0.258) TCGA-BR-A4QL-01 2 45169458 45169458 C - SIX3 Frame_Shift_Del p.P74Rfs*177 0.25 TCGA-BR-A4QL-01 2 45589 45589 C T FAM110C Missense_Mutation p.G266D 0.41 tolerated(0.11) benign(0.019) TCGA-BR-A4QL-01 2 46313362 46313362 G A PRKCE Missense_Mutation p.V485I 0.34 deleterious(0.05) possibly_damaging(0.881) TCGA-BR-A4QL-01 2 46605204 46605204 G C EPAS1 Missense_Mutation p.S474T 0.91 tolerated(0.29) benign(0.264) TCGA-BR-A4QL-01 2 48059584 48059585 - G FBXO11 Frame_Shift_Ins p.G435Wfs*5 0.31 TCGA-BR-A4QL-01 2 48914783 48914783 T - LHCGR 3'UTR 0.88 TCGA-BR-A4QL-01 2 54482354 54482354 A G TSPYL6 Missense_Mutation p.V312A 0.41 deleterious(0.02) benign(0.006) TCGA-BR-A4QL-01 2 60688652 60688652 G T BCL11A Silent p.S465S 0.39 TCGA-BR-A4QL-01 2 60688858 60688858 G A BCL11A Missense_Mutation p.R397C 0.38 deleterious(0) possibly_damaging(0.898) TCGA-BR-A4QL-01 2 60688969 60688969 G - BCL11A Frame_Shift_Del p.L360Sfs*61 0.39 TCGA-BR-A4QL-01 2 61552563 61552563 C T USP34 Missense_Mutation p.R987H 0.25 deleterious(0) probably_damaging(0.965) TCGA-BR-A4QL-01 2 64085069 64085069 C T UGP2 Missense_Mutation p.S85L 0.33 tolerated(0.37) benign(0.004) TCGA-BR-A4QL-01 2 66667042 66667042 G A MEIS1 Missense_Mutation p.E103K 0.29 tolerated(0.09) benign(0.093) TCGA-BR-A4QL-01 2 66775109 66775109 T C MEIS1 Missense_Mutation p.L308S 0.25 tolerated(0.05) possibly_damaging(0.787) TCGA-BR-A4QL-01 2 70096881 70096881 G A GMCL1 Missense_Mutation p.G417S 0.40 tolerated(0.13) probably_damaging(0.927) TCGA-BR-A4QL-01 2 70131463 70131463 T - SNRNP27 3'UTR 0.41 TCGA-BR-A4QL-01 2 70164383 70164383 A G MXD1 Missense_Mutation p.D112G 0.46 deleterious(0) possibly_damaging(0.818) TCGA-BR-A4QL-01 2 70454867 70454867 G A TIA1 Missense_Mutation p.S133L 0.35 deleterious(0) benign(0.187) TCGA-BR-A4QL-01 2 71191573 71191573 C - ATP6V1B1 Frame_Shift_Del p.I386Sfs*10 0.28 TCGA-BR-A4QL-01 2 71658542 71658542 G A ZNF638 Silent p.A1912A 0.40 TCGA-BR-A4QL-01 2 71801427 71801427 C T DYSF Missense_Mutation p.R1110C 0.40 deleterious(0.03) possibly_damaging(0.823) TCGA-BR-A4QL-01 2 73961623 73961623 T - TPRKB Frame_Shift_Del p.N25Mfs*5 0.29 TCGA-BR-A4QL-01 2 74274599 74274599 G A TET3 Missense_Mutation p.D384N 0.47 tolerated(0.2) benign(0.002) TCGA-BR-A4QL-01 2 74328868 74328868 C T TET3 Silent p.I1516I 0.37 TCGA-BR-A4QL-01 2 74491388 74491388 G A SLC4A5 Missense_Mutation p.R201W 0.48 deleterious(0.02) probably_damaging(0.925) TCGA-BR-A4QL-01 2 74781910 74781910 T - DOK1 Frame_Shift_Del p.L12Cfs*26 0.35 TCGA-BR-A4QL-01 2 77745718 77745718 A G LRRTM4 Missense_Mutation p.I426T 0.34 deleterious(0) possibly_damaging(0.585) TCGA-BR-A4QL-01 2 80646692 80646693 AA - CTNNA2 Frame_Shift_Del p.Q419Rfs*4 0.28 TCGA-BR-A4QL-01 2 85818963 85818963 G A VAMP5 Missense_Mutation p.R40H 0.46 deleterious(0) probably_damaging(1) TCGA-BR-A4QL-01 2 85892896 85892896 G A SFTPB Missense_Mutation p.H151Y 0.41 tolerated(0.19) benign(0.012) TCGA-BR-A4QL-01 2 86400804 86400804 T - IMMT Frame_Shift_Del p.K130Nfs*40 0.23 TCGA-BR-A4QL-01 2 86676934 86676934 G A KDM3A Missense_Mutation p.C64Y 0.33 tolerated(0.96) probably_damaging(0.998) TCGA-BR-A4QL-01 2 89111172 89111172 T C MIR4436A 5'Flank 0.30 TCGA-BR-A4QL-01 2 89292225 89292225 T C IGKV1-8 Splice_Site p.X17_splice 0.36 TCGA-BR-A4QL-01 2 96781111 96781111 C - ADRA2B Frame_Shift_Del p.E260Rfs*90 0.34 TCGA-BR-A4QL-01 2 97506239 97506239 C T ANKRD23 Missense_Mutation p.A147T 0.26 deleterious(0.02) possibly_damaging(0.751) TCGA-BR-A4QL-01 3 100096645 100096645 C T TOMM70A Silent p.L332L 0.37 TCGA-BR-A4QL-01 3 10268070 10268070 C A IRAK2 Missense_Mutation p.L409I 0.62 deleterious(0) probably_damaging(0.933) TCGA-BR-A4QL-01 3 112647930 112647931 - A CD200R1 Intron 0.32 TCGA-BR-A4QL-01 3 112969723 112969723 C T BOC Intron 0.35 TCGA-BR-A4QL-01 3 112998720 112998720 C T BOC Silent p.S690S 0.34 TCGA-BR-A4QL-01 3 11300948 11300948 C T HRH1 Silent p.I75I 0.42 TCGA-BR-A4QL-01 3 113878640 113878640 T C DRD3 Silent p.T115T 0.38 TCGA-BR-A4QL-01 3 114058003 114058003 G - ZBTB20 Frame_Shift_Del p.P692Lfs*43 0.35 TCGA-BR-A4QL-01 3 121251977 121251977 C T POLQ Missense_Mutation p.V274M 0.34 tolerated(0.05) possibly_damaging(0.778) TCGA-BR-A4QL-01 3 121573658 121573659 - A EAF2 Frame_Shift_Ins p.T112Nfs*4 0.45 TCGA-BR-A4QL-01 3 121980530 121980530 C T CASR Silent p.D216D 0.38 TCGA-BR-A4QL-01 3 125850310 125850310 C T ALDH1L1 Missense_Mutation p.V524I 0.35 deleterious(0.03) benign(0.287) TCGA-BR-A4QL-01 3 126157216 126157216 C T ZXDC 3'UTR 0.29 TCGA-BR-A4QL-01 3 126201133 126201133 G A UROC1 3'UTR 0.43 TCGA-BR-A4QL-01 3 126735391 126735391 C - PLXNA1 Frame_Shift_Del p.Q1019Rfs*22 0.26 TCGA-BR-A4QL-01 3 126740964 126740964 G A PLXNA1 Missense_Mutation p.G1359R 0.38 deleterious(0) benign(0.212) TCGA-BR-A4QL-01 3 127358266 127358266 C T PODXL2 Silent p.S83S 0.38 TCGA-BR-A4QL-01 3 127399266 127399266 A G ABTB1 Missense_Mutation p.Q462R 0.53 tolerated(0.22) benign(0.003) TCGA-BR-A4QL-01 3 127965713 127965713 C T EEFSEC Silent p.I117I 0.34 TCGA-BR-A4QL-01 3 128204753 128204753 G A GATA2 Missense_Mutation p.R230C 0.38 tolerated(0.07) probably_damaging(0.988) TCGA-BR-A4QL-01 3 129547260 129547260 T A TMCC1 5'UTR 0.24 TCGA-BR-A4QL-01 3 130743281 130743281 T C ASTE1 Silent p.E290E 0.35 TCGA-BR-A4QL-01 3 132175582 132175582 G A DNAJC13 Missense_Mutation p.V419I 0.29 tolerated(0.2) benign(0.004) TCGA-BR-A4QL-01 3 133306658 133306658 T - CDV3 Intron 0.47 TCGA-BR-A4QL-01 3 13359175 13359175 C T NUP210 3'UTR 0.30 TCGA-BR-A4QL-01 3 13525045 13525045 G A HDAC11 Missense_Mutation p.R78H 0.31 tolerated(0.06) benign(0.117) TCGA-BR-A4QL-01 3 135722322 135722322 C T PPP2R3A Missense_Mutation p.P661L 0.28 deleterious(0) probably_damaging(0.997) TCGA-BR-A4QL-01 3 138195072 138195072 T - ESYT3 Frame_Shift_Del p.F827Lfs*7 0.32 TCGA-BR-A4QL-01 3 138738987 138738987 C T PRR23B Missense_Mutation p.G173S 0.37 tolerated(0.23) benign(0.241) TCGA-BR-A4QL-01 3 141163979 141163979 C T ZBTB38 Missense_Mutation p.R917C 0.36 deleterious(0) probably_damaging(0.998) TCGA-BR-A4QL-01 3 142840163 142840163 G A CHST2 Missense_Mutation p.V169M 0.35 deleterious(0) probably_damaging(0.993) TCGA-BR-A4QL-01 3 14861510 14861510 C T FGD5 Missense_Mutation p.T311I 0.36 tolerated_low_confidence(0.07) benign(0.016) TCGA-BR-A4QL-01 3 15062331 15062331 A G NR2C2 Missense_Mutation p.T169A 0.37 tolerated(1) benign(0.304) TCGA-BR-A4QL-01 3 150645745 150645745 A G CLRN1 Missense_Mutation p.V239A 0.41 tolerated(1) benign(0.007) TCGA-BR-A4QL-01 3 150916135 150916135 T G GPR171 3'UTR 0.57 TCGA-BR-A4QL-01 3 151154554 151154554 C T IGSF10 Missense_Mutation p.D2599N 0.38 deleterious(0.02) probably_damaging(0.998) TCGA-BR-A4QL-01 3 151164291 151164291 C T IGSF10 Missense_Mutation p.A1160T 0.37 tolerated(0.71) benign(0.001) TCGA-BR-A4QL-01 3 15119589 15119589 C T ZFYVE20 Missense_Mutation p.A331T 0.36 tolerated(0.16) benign(0.009) TCGA-BR-A4QL-01 3 154042078 154042080 CCG - DHX36 In_Frame_Del p.G46del 0.33 TCGA-BR-A4QL-01 3 159583997 159583997 G T IQCJ-SCHIP1 Nonsense_Mutation p.G345* 0.37 TCGA-BR-A4QL-01 3 160141239 160141239 C T SMC4 Silent p.T682T 0.46 TCGA-BR-A4QL-01 3 160150302 160150302 A G SMC4 Missense_Mutation p.S1177G 0.39 deleterious(0) probably_damaging(0.99) TCGA-BR-A4QL-01 3 160155773 160155774 - G TRIM59 Frame_Shift_Ins p.I400Tfs*10 0.25 TCGA-BR-A4QL-01 3 167249049 167249049 A G WDR49 Missense_Mutation p.L339P 0.41 deleterious(0.03) possibly_damaging(0.646) TCGA-BR-A4QL-01 3 171455827 171455828 - T PLD1 Frame_Shift_Ins p.N5Kfs*16 0.25 TCGA-BR-A4QL-01 3 172241171 172241171 C A TNFSF10 Missense_Mutation p.A2S 0.31 tolerated_low_confidence(0.29) benign(0.01) TCGA-BR-A4QL-01 3 172351781 172351781 A G NCEH1 Silent p.N277N 0.39 TCGA-BR-A4QL-01 3 179298752 179298752 C T ACTL6A Missense_Mutation p.R301W 0.37 deleterious(0) probably_damaging(1) TCGA-BR-A4QL-01 3 182870248 182870248 G A LAMP3 Missense_Mutation p.T268M 0.40 deleterious(0) probably_damaging(0.969) TCGA-BR-A4QL-01 3 182872079 182872079 T - LAMP3 Frame_Shift_Del p.K50Nfs*15 0.30 TCGA-BR-A4QL-01 3 183035921 183035921 G A MCF2L2 Missense_Mutation p.P230S 0.33 deleterious(0.01) probably_damaging(0.996) TCGA-BR-A4QL-01 3 183665239 183665239 C T ABCC5 Missense_Mutation p.R1096Q 0.43 deleterious(0) probably_damaging(0.992) TCGA-BR-A4QL-01 3 183885455 183885455 G A DVL3 Missense_Mutation p.R429H 0.32 deleterious(0.05) probably_damaging(0.994) TCGA-BR-A4QL-01 3 18393620 18393620 T C SATB1 Missense_Mutation p.N548S 0.43 deleterious(0) probably_damaging(0.996) TCGA-BR-A4QL-01 3 184018118 184018118 G C PSMD2 Missense_Mutation p.Q81H 0.39 tolerated(0.26) benign(0.001) TCGA-BR-A4QL-01 3 184910086 184910086 T - EHHADH Frame_Shift_Del p.K700Nfs*10 0.26 TCGA-BR-A4QL-01 3 186915363 186915363 C T RTP1 Silent p.S20S 0.35 TCGA-BR-A4QL-01 3 186937805 186937805 G A MASP1 3'UTR 0.40 TCGA-BR-A4QL-01 3 187416477 187416477 C T RTP2 Missense_Mutation p.V163I 0.34 tolerated(0.19) benign(0.026) TCGA-BR-A4QL-01 3 189038590 189038590 G A TPRG1 Missense_Mutation p.R270H 0.29 deleterious(0) probably_damaging(0.998) TCGA-BR-A4QL-01 3 190986180 190986180 T - UTS2B 3'UTR 0.40 TCGA-BR-A4QL-01 3 191087798 191087798 G A CCDC50 Missense_Mutation p.A141T 0.33 tolerated(0.28) benign(0.005) TCGA-BR-A4QL-01 3 192516769 192516769 G A MB21D2 Silent p.S294S 0.41 TCGA-BR-A4QL-01 3 193336664 193336664 C T OPA1 Missense_Mutation p.P188L 0.33 tolerated(0.24) benign(0.018) TCGA-BR-A4QL-01 3 195013108 195013108 C T ACAP2 Silent p.A613A 0.36 TCGA-BR-A4QL-01 3 195701373 195701373 G A SDHAP1 RNA 0.11 TCGA-BR-A4QL-01 3 195966504 195966504 T - PCYT1A Frame_Shift_Del p.S271Afs*29 0.24 TCGA-BR-A4QL-01 3 196229935 196229935 T C RNF168 Missense_Mutation p.K37R 0.36 deleterious(0.05) benign(0.006) TCGA-BR-A4QL-01 3 196386950 196386950 G A NRROS Missense_Mutation p.E146K 0.32 deleterious(0.01) probably_damaging(0.996) TCGA-BR-A4QL-01 3 196792302 196792302 G A DLG1 Nonsense_Mutation p.R773* 0.35 TCGA-BR-A4QL-01 3 196793609 196793609 G A DLG1 Silent p.Y721Y 0.30 TCGA-BR-A4QL-01 3 25674015 25674015 A C TOP2B Silent p.S391S 0.45 TCGA-BR-A4QL-01 3 27759208 27759208 C T EOMES Missense_Mutation p.V472I 0.33 tolerated(0.25) benign(0.337) TCGA-BR-A4QL-01 3 28379465 28379465 T C AZI2 Silent p.E134E 0.45 TCGA-BR-A4QL-01 3 32568309 32568309 C T DYNC1LI1 Silent p.T518T 0.34 TCGA-BR-A4QL-01 3 35785437 35785437 C T ARPP21 Missense_Mutation p.P672L 0.39 deleterious(0) benign(0.275) TCGA-BR-A4QL-01 3 36759553 36759553 G T DCLK3 Silent p.I567I 0.36 TCGA-BR-A4QL-01 3 38049344 38049344 G A PLCD1 Missense_Mutation p.R752C 0.27 deleterious(0.01) possibly_damaging(0.684) TCGA-BR-A4QL-01 3 40528461 40528461 A - ZNF619 Frame_Shift_Del p.T195Qfs*3 0.34 TCGA-BR-A4QL-01 3 41938397 41938397 G A ULK4 Nonsense_Mutation p.R483* 0.30 TCGA-BR-A4QL-01 3 42265237 42265238 - T TRAK1 3'UTR 0.23 TCGA-BR-A4QL-01 3 42680001 42680001 G A NKTR Silent p.S935S 0.38 TCGA-BR-A4QL-01 3 43647331 43647331 A G ANO10 Missense_Mutation p.L5S 0.18 deleterious(0.02) benign(0.224) TCGA-BR-A4QL-01 3 44636704 44636704 G T ZNF660 3'UTR 0.31 TCGA-BR-A4QL-01 3 44775909 44775909 G T ZNF501 5'UTR 0.31 TCGA-BR-A4QL-01 3 4494631 4494631 A - SUMF1 Frame_Shift_Del p.Y125Tfs*16 0.30 TCGA-BR-A4QL-01 3 46063377 46063377 C T XCR1 Silent p.P21P 0.39 TCGA-BR-A4QL-01 3 46563024 46563024 G T LRRC2 Missense_Mutation p.L352I 0.39 deleterious(0.04) benign(0.025) TCGA-BR-A4QL-01 3 47042816 47042816 C - NBEAL2 Frame_Shift_Del p.V1513Wfs*89 0.34 TCGA-BR-A4QL-01 3 47139450 47139450 C A SETD2 Missense_Mutation p.D1713Y 0.35 deleterious(0) probably_damaging(0.999) TCGA-BR-A4QL-01 3 47163427 47163427 C T SETD2 Missense_Mutation p.C900Y 0.42 tolerated_low_confidence(0.33) benign(0.001) TCGA-BR-A4QL-01 3 47629765 47629765 T C SMARCC1 Silent p.P1084P 0.42 TCGA-BR-A4QL-01 3 48336187 48336187 G A NME6 Silent p.C175C 0.08 TCGA-BR-A4QL-01 3 4859884 4859884 C T ITPR1 Silent p.T2647T 0.28 TCGA-BR-A4QL-01 3 48682920 48682920 C T CELSR3 Missense_Mutation p.A2585T 0.33 tolerated(0.09) possibly_damaging(0.5) TCGA-BR-A4QL-01 3 48699541 48699543 AAA - CELSR3 In_Frame_Del p.F175del 0.38 TCGA-BR-A4QL-01 3 48726979 48726980 CA - IP6K2 Frame_Shift_Del p.C257Wfs*45 0.36 TCGA-BR-A4QL-01 3 49156569 49156569 C T USP19 Missense_Mutation p.G4R 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.888) TCGA-BR-A4QL-01 3 49162267 49162267 A G LAMB2 Silent p.I992I 0.11 TCGA-BR-A4QL-01 3 49690300 49690300 C - BSN Frame_Shift_Del p.P1105Rfs*5 0.09 TCGA-BR-A4QL-01 3 49698693 49698693 C T BSN Missense_Mutation p.R3139C 0.33 unknown(0) TCGA-BR-A4QL-01 3 49760113 49760113 G A GMPPB Silent p.F159F 0.36 TCGA-BR-A4QL-01 3 49866635 49866635 T C TRAIP Silent p.P437P 0.35 TCGA-BR-A4QL-01 3 49898957 49898957 T C CAMKV Missense_Mutation p.E119G 0.06 deleterious(0) probably_damaging(0.998) TCGA-BR-A4QL-01 3 50330496 50330496 G A HYAL3 3'UTR 0.40 TCGA-BR-A4QL-01 3 51417604 51417604 C - DOCK3 Frame_Shift_Del p.P1852Qfs*45 0.39 TCGA-BR-A4QL-01 3 51429992 51429992 G T RBM15B Missense_Mutation p.D388Y 0.40 deleterious(0) probably_damaging(0.974) TCGA-BR-A4QL-01 3 51677945 51677945 A G RAD54L2 Missense_Mutation p.N802S 0.30 deleterious(0) probably_damaging(0.998) TCGA-BR-A4QL-01 3 51680401 51680401 G A RAD54L2 Missense_Mutation p.R977H 0.62 deleterious(0) probably_damaging(0.931) TCGA-BR-A4QL-01 3 52255992 52255992 G A TLR9 Silent p.A934A 0.42 TCGA-BR-A4QL-01 3 52281754 52281754 C A PPM1M Silent p.A6A 0.62 TCGA-BR-A4QL-01 3 52393996 52393996 C T DNAH1 Missense_Mutation p.A1491V 0.34 probably_damaging(0.995) TCGA-BR-A4QL-01 3 52555418 52555418 G A STAB1 Missense_Mutation p.V1984M 0.37 tolerated(0.25) benign(0.026) TCGA-BR-A4QL-01 3 52740858 52740858 T G SPCS1 Missense_Mutation p.V116G 0.41 deleterious(0) probably_damaging(0.978) TCGA-BR-A4QL-01 3 53215749 53215752 GTAA - PRKCD Splice_Site p.X191_splice 0.55 TCGA-BR-A4QL-01 3 53700370 53700370 C T CACNA1D Silent p.I308I 0.43 TCGA-BR-A4QL-01 3 54952736 54952736 G A LRTM1 Missense_Mutation p.A263V 0.29 tolerated(0.3) benign(0) TCGA-BR-A4QL-01 3 57312678 57312678 C T ASB14 Silent p.P386P 0.11 TCGA-BR-A4QL-01 3 58296231 58296231 T A RPP14 Intron 0.32 TCGA-BR-A4QL-01 3 63938154 63938156 ATT - ATXN7 In_Frame_Del p.Y166del 0.33 TCGA-BR-A4QL-01 3 64005085 64005086 AT - PSMD6 Frame_Shift_Del p.Y128* 0.09 TCGA-BR-A4QL-01 3 64133162 64133162 C T PRICKLE2 Missense_Mutation p.R335Q 0.36 deleterious(0.03) probably_damaging(0.938) TCGA-BR-A4QL-01 3 64672445 64672445 G A ADAMTS9 Silent p.F105F 0.38 TCGA-BR-A4QL-01 3 67049611 67049611 T C KBTBD8 Missense_Mutation p.F75L 0.35 deleterious(0.01) probably_damaging(0.973) TCGA-BR-A4QL-01 3 68782295 68782295 A G FAM19A4 Nonstop_Mutation p.*141Qext*45 0.42 TCGA-BR-A4QL-01 3 69097100 69097100 A G TMF1 Silent p.G252G 0.50 TCGA-BR-A4QL-01 3 69129290 69129292 CTT - UBA3 In_Frame_Del p.R13del 0.30 TCGA-BR-A4QL-01 3 73433476 73433476 C T PDZRN3 Silent p.P747P 0.07 TCGA-BR-A4QL-01 3 74334537 74334537 A G CNTN3 Missense_Mutation p.Y875H 0.39 deleterious(0.01) benign(0.232) TCGA-BR-A4QL-01 3 7721813 7721813 G A GRM7 Silent p.P843P 0.35 TCGA-BR-A4QL-01 3 78648026 78648027 - T ROBO1 3'UTR 0.30 TCGA-BR-A4QL-01 3 78737895 78737895 C T ROBO1 Missense_Mutation p.R358H 0.43 deleterious(0.03) probably_damaging(0.999) TCGA-BR-A4QL-01 3 78796030 78796030 G A ROBO1 Nonsense_Mutation p.Q174* 0.33 TCGA-BR-A4QL-01 3 93593131 93593131 A G PROS1 Silent p.A663A 0.41 TCGA-BR-A4QL-01 3 93761893 93761893 A - ARL13B Frame_Shift_Del p.M280Wfs*10 0.36 TCGA-BR-A4QL-01 3 9514939 9514939 G A SETD5 Missense_Mutation p.R1072Q 0.41 deleterious(0) probably_damaging(0.996) TCGA-BR-A4QL-01 3 9517295 9517295 C - SETD5 Frame_Shift_Del p.S1286Lfs*84 0.29 TCGA-BR-A4QL-01 3 97851635 97851635 T C OR5H1 Silent p.L32L 0.34 TCGA-BR-A4QL-01 3 98235544 98235544 G A CLDND1 Missense_Mutation p.R264W 0.39 tolerated(0.05) benign(0.135) TCGA-BR-A4QL-01 3 98251047 98251047 C T GPR15 Missense_Mutation p.A57V 0.42 tolerated(0.29) benign(0.303) TCGA-BR-A4QL-01 3 98300252 98300252 G A CPOX Nonsense_Mutation p.R426* 0.33 TCGA-BR-A4QL-01 3 9832966 9832966 C T TADA3 Missense_Mutation p.R62H 0.35 deleterious(0.01) probably_damaging(0.974) TCGA-BR-A4QL-01 3 9867614 9867614 G A TTLL3 Missense_Mutation p.A429T 0.13 deleterious(0) probably_damaging(0.991) TCGA-BR-A4QL-01 3 9965696 9965696 A - IL17RC Frame_Shift_Del p.N324Tfs*2 0.32 TCGA-BR-A4QL-01 4 100789277 100789278 - A DAPP1 Frame_Shift_Ins p.I261Nfs*20 0.28 TCGA-BR-A4QL-01 4 10080545 10080545 G A WDR1 Silent p.P455P 0.40 TCGA-BR-A4QL-01 4 102951317 102951317 A - BANK1 Frame_Shift_Del p.T601Lfs*8 0.30 TCGA-BR-A4QL-01 4 103189225 103189225 T - SLC39A8 Frame_Shift_Del p.E285Sfs*8 0.37 TCGA-BR-A4QL-01 4 103228644 103228644 C T SLC39A8 Silent p.G167G 0.33 TCGA-BR-A4QL-01 4 103870465 103870465 T - SLC9B1 Frame_Shift_Del p.I111Ffs*9 0.25 TCGA-BR-A4QL-01 4 103870488 103870489 - A SLC9B1 Frame_Shift_Ins p.Y103Lfs*2 0.21 TCGA-BR-A4QL-01 4 104512673 104512673 A T TACR3 Missense_Mutation p.N352K 0.36 deleterious(0) probably_damaging(1) TCGA-BR-A4QL-01 4 104640638 104640638 G - TACR3 Frame_Shift_Del p.A66Rfs*51 0.21 TCGA-BR-A4QL-01 4 106621122 106621122 A - INTS12 Frame_Shift_Del p.L14* 0.32 TCGA-BR-A4QL-01 4 106861729 106861729 C T NPNT Silent p.N263N 0.39 TCGA-BR-A4QL-01 4 113352968 113352968 C T ALPK1 Silent p.C755C 0.34 TCGA-BR-A4QL-01 4 11400913 11400913 C T HS3ST1 Silent p.P239P 0.47 TCGA-BR-A4QL-01 4 114823494 114823494 T - ARSJ Frame_Shift_Del p.K579Rfs*30 0.31 TCGA-BR-A4QL-01 4 115773883 115773884 - T NDST4 Frame_Shift_Ins p.T605Nfs*22 0.35 TCGA-BR-A4QL-01 4 118005314 118005314 T C TRAM1L1 3'UTR 0.47 TCGA-BR-A4QL-01 4 118975891 118975891 T G NDST3 Missense_Mutation p.L276V 0.32 deleterious(0.03) probably_damaging(0.996) TCGA-BR-A4QL-01 4 122053758 122053758 T G TNIP3 3'UTR 0.32 TCGA-BR-A4QL-01 4 122853799 122853799 C T TRPC3 Missense_Mutation p.R205H 0.42 deleterious(0) probably_damaging(0.987) TCGA-BR-A4QL-01 4 123329146 123329146 G A ADAD1 Missense_Mutation p.D270N 0.45 deleterious(0) probably_damaging(1) TCGA-BR-A4QL-01 4 129869675 129869675 T - SCLT1 Frame_Shift_Del p.A424Qfs*6 0.33 TCGA-BR-A4QL-01 4 138451389 138451389 G A PCDH18 Silent p.C618C 0.39 TCGA-BR-A4QL-01 4 138452697 138452697 A - PCDH18 Frame_Shift_Del p.F182Lfs*18 0.34 TCGA-BR-A4QL-01 4 141578953 141578953 G T TBC1D9 Missense_Mutation p.D645E 0.38 deleterious(0) probably_damaging(0.997) TCGA-BR-A4QL-01 4 145061844 145061844 T C GYPA 5'UTR 0.33 TCGA-BR-A4QL-01 4 146601541 146601541 C T C4orf51 Silent p.C62C 0.45 TCGA-BR-A4QL-01 4 15009113 15009113 A G CPEB2 Missense_Mutation p.K616R 0.34 deleterious_low_confidence(0.02) probably_damaging(0.998) TCGA-BR-A4QL-01 4 153247289 153247289 G A FBXW7 Missense_Mutation p.R505C 0.43 deleterious(0) probably_damaging(1) TCGA-BR-A4QL-01 4 15539598 15539598 A G CC2D2A Missense_Mutation p.E614G 0.15 deleterious(0.04) possibly_damaging(0.885) TCGA-BR-A4QL-01 4 156825180 156825180 A T TDO2 Nonsense_Mutation p.K16* 0.36 TCGA-BR-A4QL-01 4 159782570 159782571 - A FNIP2 Frame_Shift_Ins p.N411Kfs*20 0.40 TCGA-BR-A4QL-01 4 162697165 162697165 A C FSTL5 Missense_Mutation p.N157K 0.29 tolerated(0.74) benign(0.001) TCGA-BR-A4QL-01 4 166910564 166910564 T C TLL1 Silent p.D67D 0.40 TCGA-BR-A4QL-01 4 169083678 169083678 G A ANXA10 Splice_Site p.X66_splice 0.38 TCGA-BR-A4QL-01 4 170641235 170641235 T - CLCN3 3'UTR 0.37 TCGA-BR-A4QL-01 4 173873245 173873245 C T GALNTL6 Missense_Mutation p.R403W 0.37 deleterious(0) probably_damaging(0.992) TCGA-BR-A4QL-01 4 173930422 173930422 G A GALNTL6 Missense_Mutation p.E489K 0.30 tolerated(0.36) possibly_damaging(0.64) TCGA-BR-A4QL-01 4 175898755 175898755 T C ADAM29 Silent p.C693C 0.42 TCGA-BR-A4QL-01 4 175898771 175898771 A - ADAM29 Frame_Shift_Del p.S701Vfs*4 0.23 TCGA-BR-A4QL-01 4 178256839 178256839 C T NEIL3 Intron 0.38 TCGA-BR-A4QL-01 4 185038136 185038136 A G ENPP6 Missense_Mutation p.M243T 0.37 deleterious(0) possibly_damaging(0.806) TCGA-BR-A4QL-01 4 186379967 186379967 T - CCDC110 Frame_Shift_Del p.T592Hfs*5 0.29 TCGA-BR-A4QL-01 4 187004768 187004768 G A TLR3 Missense_Mutation p.R643H 0.43 tolerated(0.08) possibly_damaging(0.491) TCGA-BR-A4QL-01 4 187541438 187541438 C T FAT1 Missense_Mutation p.R2101H 0.32 probably_damaging(0.911) TCGA-BR-A4QL-01 4 26483560 26483560 G T CCKAR Silent p.I329I 0.37 TCGA-BR-A4QL-01 4 38690460 38690460 A - KLF3 Frame_Shift_Del p.K106Nfs*21 0.09 TCGA-BR-A4QL-01 4 38691476 38691476 C - KLF3 Frame_Shift_Del p.P226Rfs*52 0.37 TCGA-BR-A4QL-01 4 38800236 38800236 T C TLR1 Missense_Mutation p.I73V 0.34 tolerated(1) benign(0.007) TCGA-BR-A4QL-01 4 3949803 3949803 C T FAM86EP RNA 0.36 TCGA-BR-A4QL-01 4 39505574 39505575 - T UGDH Frame_Shift_Ins p.M432Nfs*20 0.20 TCGA-BR-A4QL-01 4 40127935 40127935 G A N4BP2 Silent p.Q1504Q 0.30 TCGA-BR-A4QL-01 4 40440469 40440469 C T RBM47 Missense_Mutation p.V148M 0.43 deleterious(0.02) probably_damaging(0.998) TCGA-BR-A4QL-01 4 40752699 40752699 C T NSUN7 5'UTR 0.06 TCGA-BR-A4QL-01 4 41605923 41605926 GTAA - LIMCH1 Splice_Site p.X125_splice 0.30 TCGA-BR-A4QL-01 4 4199699 4199699 G A OTOP1 Silent p.L288L 0.35 TCGA-BR-A4QL-01 4 420302 420302 A C ABCA11P RNA 0.34 TCGA-BR-A4QL-01 4 42145857 42145857 G C BEND4 Missense_Mutation p.H214Q 0.45 tolerated_low_confidence(1) benign(0) TCGA-BR-A4QL-01 4 4228387 4228387 C T OTOP1 Missense_Mutation p.V69M 0.28 deleterious(0.01) possibly_damaging(0.877) TCGA-BR-A4QL-01 4 52943043 52943043 C A SPATA18 Missense_Mutation p.P286Q 0.37 tolerated(0.2) probably_damaging(0.997) TCGA-BR-A4QL-01 4 55129867 55129867 C T PDGFRA Missense_Mutation p.T134M 0.26 tolerated(0.16) benign(0.009) TCGA-BR-A4QL-01 4 5620262 5620262 C T EVC2 Silent p.A883A 0.41 TCGA-BR-A4QL-01 4 56841070 56841070 C T CEP135 Nonsense_Mutation p.R470* 0.29 TCGA-BR-A4QL-01 4 57179502 57179503 - A KIAA1211 Frame_Shift_Ins p.Q168Tfs*17 0.30 TCGA-BR-A4QL-01 4 57181497 57181497 T C KIAA1211 Missense_Mutation p.L610P 0.52 deleterious(0) possibly_damaging(0.883) TCGA-BR-A4QL-01 4 57798156 57798156 A - REST Frame_Shift_Del p.N1046Mfs*65 0.22 TCGA-BR-A4QL-01 4 5803693 5803693 C T EVC Missense_Mutation p.A774V 0.44 deleterious(0.03) benign(0.313) TCGA-BR-A4QL-01 4 5990091 5990091 G T C4orf50 Missense_Mutation p.L470M 0.30 tolerated(0.22) benign(0.199) TCGA-BR-A4QL-01 4 6107463 6107463 G A JAKMIP1 Missense_Mutation p.R121C 0.36 deleterious(0) probably_damaging(0.999) TCGA-BR-A4QL-01 4 6107671 6107671 C T JAKMIP1 Silent p.L51L 0.37 TCGA-BR-A4QL-01 4 661762 661762 A G PDE6B Missense_Mutation p.K824E 0.39 tolerated(0.72) benign(0) TCGA-BR-A4QL-01 4 66467573 66467573 T - EPHA5 Frame_Shift_Del p.K232Nfs*36 0.33 TCGA-BR-A4QL-01 4 68930611 68930611 T C TMPRSS11F Silent p.P269P 0.33 TCGA-BR-A4QL-01 4 69182036 69182036 C T YTHDC1 Missense_Mutation p.R652Q 0.40 tolerated(0.29) benign(0.022) TCGA-BR-A4QL-01 4 71555158 71555158 T A UTP3 Missense_Mutation p.I255N 0.30 tolerated(0.3) benign(0.016) TCGA-BR-A4QL-01 4 71660563 71660563 C T RUFY3 Silent p.N503N 0.37 TCGA-BR-A4QL-01 4 728799 728799 C - PCGF3 Frame_Shift_Del p.L65Cfs*26 0.23 TCGA-BR-A4QL-01 4 7725544 7725544 C T SORCS2 Missense_Mutation p.R849C 0.38 deleterious(0) probably_damaging(0.977) TCGA-BR-A4QL-01 4 77300523 77300523 G A CCDC158 Missense_Mutation p.R317C 0.34 tolerated(0.09) benign(0.004) TCGA-BR-A4QL-01 4 77660524 77660524 C T SHROOM3 Missense_Mutation p.R400W 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-BR-A4QL-01 4 78697453 78697453 T - CNOT6L Frame_Shift_Del p.K33Nfs*7 0.33 TCGA-BR-A4QL-01 4 79300892 79300892 C T FRAS1 Missense_Mutation p.T1102I 0.40 benign(0.193) TCGA-BR-A4QL-01 4 79410048 79410049 - A FRAS1 Frame_Shift_Ins p.D2926Gfs*25 0.33 TCGA-BR-A4QL-01 4 79786730 79786730 C T BMP2K Missense_Mutation p.P363S 0.38 deleterious(0.02) benign(0.076) TCGA-BR-A4QL-01 4 8228895 8228895 G A SH3TC1 Missense_Mutation p.D492N 0.41 tolerated(0.24) benign(0.056) TCGA-BR-A4QL-01 4 83838382 83838382 T - THAP9 Frame_Shift_Del p.F341Lfs*2 0.29 TCGA-BR-A4QL-01 4 8398744 8398744 C T ACOX3 Missense_Mutation p.A326T 0.28 deleterious(0.02) possibly_damaging(0.78) TCGA-BR-A4QL-01 4 84026090 84026090 C T PLAC8 Missense_Mutation p.V68I 0.34 tolerated(0.09) possibly_damaging(0.884) TCGA-BR-A4QL-01 4 85530586 85530586 A - CDS1 Frame_Shift_Del p.N85Tfs*10 0.13 TCGA-BR-A4QL-01 4 8588903 8588903 G A GPR78 Missense_Mutation p.R302H 0.49 deleterious(0) probably_damaging(0.973) TCGA-BR-A4QL-01 4 8608573 8608573 G A CPZ Missense_Mutation p.R339H 0.53 tolerated(0.13) benign(0.305) TCGA-BR-A4QL-01 4 88898240 88898240 G T SPP1 Missense_Mutation p.E28D 0.38 deleterious(0.01) possibly_damaging(0.848) TCGA-BR-A4QL-01 4 89192304 89192304 G A PPM1K Intron 0.44 TCGA-BR-A4QL-01 4 94750179 94750179 G A ATOH1 Silent p.P34P 0.40 TCGA-BR-A4QL-01 4 94750450 94750450 C T ATOH1 Missense_Mutation p.R125W 0.35 deleterious(0) probably_damaging(0.985) TCGA-BR-A4QL-01 4 95239029 95239029 T - HPGDS Frame_Shift_Del p.N74Tfs*38 0.27 TCGA-BR-A4QL-01 5 102895167 102895167 C T NUDT12 Missense_Mutation p.C70Y 0.33 deleterious(0) probably_damaging(0.979) TCGA-BR-A4QL-01 5 107559886 107559886 T G FBXL17 Missense_Mutation p.E517A 0.35 deleterious(0.04) benign(0.278) TCGA-BR-A4QL-01 5 113698877 113698877 C T KCNN2 Silent p.S135S 0.41 TCGA-BR-A4QL-01 5 114548009 114548010 - A PGGT1B 3'UTR 0.33 TCGA-BR-A4QL-01 5 115298452 115298452 G A AQPEP Silent p.S46S 0.29 TCGA-BR-A4QL-01 5 115783385 115783385 C T SEMA6A Missense_Mutation p.V673I 0.54 tolerated(0.17) benign(0.008) TCGA-BR-A4QL-01 5 123983920 123983920 T - ZNF608 Frame_Shift_Del p.A720Lfs*13 0.30 TCGA-BR-A4QL-01 5 125939525 125939525 T G PHAX Silent p.A120A 0.47 TCGA-BR-A4QL-01 5 130831315 130831315 A - RAPGEF6 Frame_Shift_Del p.F486Lfs*10 0.19 TCGA-BR-A4QL-01 5 1318463 1318463 T A CLPTM1L 3'UTR 0.09 TCGA-BR-A4QL-01 5 132018312 132018312 T - IL4 3'UTR 0.53 TCGA-BR-A4QL-01 5 132159958 132159958 C T SHROOM1 Silent p.R465R 0.47 TCGA-BR-A4QL-01 5 1335244 1335244 C T CLPTM1L Missense_Mutation p.D242N 0.42 tolerated(0.14) benign(0.01) TCGA-BR-A4QL-01 5 133914490 133914490 C T JADE2 Missense_Mutation p.T619M 0.26 tolerated(0.12) benign(0.001) TCGA-BR-A4QL-01 5 135391436 135391436 C T TGFBI Missense_Mutation p.T493M 0.18 tolerated(0.1) probably_damaging(0.984) TCGA-BR-A4QL-01 5 137244597 137244597 A G PKD2L2 Silent p.G430G 0.07 TCGA-BR-A4QL-01 5 138145810 138145810 C T CTNNA1 Nonsense_Mutation p.R129* 0.41 TCGA-BR-A4QL-01 5 138266535 138266535 A - CTNNA1 Frame_Shift_Del p.N738Ifs*53 0.25 TCGA-BR-A4QL-01 5 140166926 140166926 G A PCDHA1 Missense_Mutation p.A351T 0.40 tolerated_low_confidence(1) benign(0) TCGA-BR-A4QL-01 5 140237715 140237715 C G PCDHA10 Silent p.V694V 0.41 TCGA-BR-A4QL-01 5 140250745 140250745 C T PCDHA11 Missense_Mutation p.A686V 0.45 tolerated_low_confidence(0.31) benign(0.004) TCGA-BR-A4QL-01 5 140256290 140256290 C T PCDHA12 Silent p.S411S 0.32 TCGA-BR-A4QL-01 5 140431806 140431806 G A PCDHB1 Missense_Mutation p.V251I 0.28 tolerated(0.67) benign(0.014) TCGA-BR-A4QL-01 5 140474383 140474383 C T PCDHB2 Silent p.A3A 0.37 TCGA-BR-A4QL-01 5 140474556 140474556 T G PCDHB2 Missense_Mutation p.L61R 0.53 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BR-A4QL-01 5 140514944 140514944 C T PCDHB5 5'UTR 0.44 TCGA-BR-A4QL-01 5 140517067 140517067 C T PCDHB5 Missense_Mutation p.S684L 0.37 tolerated_low_confidence(0.36) benign(0.004) TCGA-BR-A4QL-01 5 140530541 140530541 A G PCDHB6 Missense_Mutation p.N235D 0.40 deleterious(0) probably_damaging(0.91) TCGA-BR-A4QL-01 5 140537160 140537160 C T PCDHB17 Silent p.F528F 0.37 TCGA-BR-A4QL-01 5 140537175 140537175 C T PCDHB17 Silent p.G533G 0.36 TCGA-BR-A4QL-01 5 140553461 140553461 C A PCDHB7 Missense_Mutation p.L349M 0.47 tolerated_low_confidence(1) benign(0.001) TCGA-BR-A4QL-01 5 140554770 140554770 G A PCDHB7 Missense_Mutation p.R785H 0.09 tolerated_low_confidence(0.05) benign(0) TCGA-BR-A4QL-01 5 140557892 140557892 C T PCDHB8 Missense_Mutation p.R93C 0.09 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BR-A4QL-01 5 140559570 140559570 C T PCDHB8 Missense_Mutation p.P652L 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.519) TCGA-BR-A4QL-01 5 140588924 140588924 G - PCDHB12 Frame_Shift_Del p.G149Vfs*12 0.09 TCGA-BR-A4QL-01 5 140615913 140615913 C T PCDHB18 RNA 0.36 TCGA-BR-A4QL-01 5 140626234 140626234 C T PCDHB15 Missense_Mutation p.T363I 0.42 tolerated_low_confidence(0.14) benign(0.042) TCGA-BR-A4QL-01 5 140762727 140762727 G A PCDHGA7 Silent p.A87A 0.38 TCGA-BR-A4QL-01 5 140763083 140763083 G A PCDHGA7 Missense_Mutation p.R206Q 0.37 deleterious_low_confidence(0.01) benign(0.002) TCGA-BR-A4QL-01 5 140800995 140800995 C T PCDHGA11 Silent p.I67I 0.32 TCGA-BR-A4QL-01 5 140807364 140807364 G A PCDHGB6 Intron 0.58 TCGA-BR-A4QL-01 5 140811757 140811757 C T PCDHGA12 Silent p.H477H 0.40 TCGA-BR-A4QL-01 5 140857742 140857742 A - PCDHGC3 Frame_Shift_Del p.N689Ifs*10 0.36 TCGA-BR-A4QL-01 5 141008157 141008157 G A HDAC3 Silent p.N220N 0.38 TCGA-BR-A4QL-01 5 142500657 142500657 T C ARHGAP26 Missense_Mutation p.M548T 0.35 deleterious(0) benign(0.025) TCGA-BR-A4QL-01 5 14291209 14291209 C T TRIO Missense_Mutation p.P309S 0.45 benign(0.217) TCGA-BR-A4QL-01 5 14364895 14364895 G A TRIO Silent p.Q908Q 0.43 TCGA-BR-A4QL-01 5 145442093 145442093 G A SH3RF2 Silent p.A673A 0.34 TCGA-BR-A4QL-01 5 145647320 145647321 AA - RBM27 Frame_Shift_Del p.K816Tfs*63 0.36 TCGA-BR-A4QL-01 5 145849218 145849218 A T TCERG1 Missense_Mutation p.E437V 0.37 deleterious(0) unknown(0) TCGA-BR-A4QL-01 5 145886723 145886723 A - TCERG1 Frame_Shift_Del p.K957Rfs*17 0.33 TCGA-BR-A4QL-01 5 151304199 151304199 A - GLRA1 5'UTR 0.25 TCGA-BR-A4QL-01 5 159707575 159707575 G T CCNJL Silent p.S79S 0.40 TCGA-BR-A4QL-01 5 159776035 159776035 A - C1QTNF2 3'UTR 0.28 TCGA-BR-A4QL-01 5 160042941 160042941 C T ATP10B Missense_Mutation p.A853T 0.35 deleterious(0.02) possibly_damaging(0.85) TCGA-BR-A4QL-01 5 161292758 161292758 C T GABRA1 Silent p.F73F 0.42 TCGA-BR-A4QL-01 5 16475174 16475174 C T FAM134B Silent p.T390T 0.45 TCGA-BR-A4QL-01 5 16794807 16794807 C T MYO10 Missense_Mutation p.E139K 0.30 deleterious(0.01) probably_damaging(0.995) TCGA-BR-A4QL-01 5 169015404 169015404 A - SPDL1 5'UTR 0.33 TCGA-BR-A4QL-01 5 171785810 171785810 C - SH3PXD2B Frame_Shift_Del p.V212Cfs*29 0.30 TCGA-BR-A4QL-01 5 172195819 172195819 C T DUSP1 Silent p.T350T 0.06 TCGA-BR-A4QL-01 5 172585829 172585829 G A BNIP1 Missense_Mutation p.G161R 0.38 tolerated(0.18) benign(0.012) TCGA-BR-A4QL-01 5 17275856 17275856 G A BASP1 Silent p.S177S 0.48 TCGA-BR-A4QL-01 5 176023843 176023843 C A GPRIN1 Missense_Mutation p.R998L 0.31 deleterious(0) probably_damaging(0.997) TCGA-BR-A4QL-01 5 176815279 176815279 T C SLC34A1 Missense_Mutation p.L281P 0.36 deleterious(0) probably_damaging(0.99) TCGA-BR-A4QL-01 5 176940358 176940358 A C DDX41 Missense_Mutation p.I409S 0.34 deleterious(0.02) benign(0.116) TCGA-BR-A4QL-01 5 178309869 178309869 A - ZNF354B Frame_Shift_Del p.N140Ifs*4 0.36 TCGA-BR-A4QL-01 5 178359024 178359024 C T ZFP2 Missense_Mutation p.T237I 0.51 deleterious(0) probably_damaging(0.999) TCGA-BR-A4QL-01 5 178506224 178506224 G T ZNF354C Missense_Mutation p.R264I 0.47 deleterious(0) probably_damaging(1) TCGA-BR-A4QL-01 5 178563003 178563003 G A ADAMTS2 Silent p.T664T 0.40 TCGA-BR-A4QL-01 5 179201504 179201504 A G MAML1 Missense_Mutation p.M893V 0.33 tolerated(0.57) benign(0.013) TCGA-BR-A4QL-01 5 180661180 180661180 T G TRIM41 Missense_Mutation p.L433R 0.28 deleterious(0) probably_damaging(0.949) TCGA-BR-A4QL-01 5 180687359 180687361 TTC - TRIM52 In_Frame_Del p.E152del 0.33 TCGA-BR-A4QL-01 5 22078839 22078839 A G CDH12 5'UTR 0.43 TCGA-BR-A4QL-01 5 230997 230997 C T SDHA Silent p.Y259Y 0.25 TCGA-BR-A4QL-01 5 233669 233669 A G SDHA Missense_Mutation p.R325G 0.35 deleterious_low_confidence(0.01) benign(0.217) TCGA-BR-A4QL-01 5 26885830 26885830 T G CDH9 Missense_Mutation p.D592A 0.39 deleterious(0) probably_damaging(0.994) TCGA-BR-A4QL-01 5 31983496 31983496 G A PDZD2 Missense_Mutation p.A238T 0.40 tolerated(0.77) benign(0) TCGA-BR-A4QL-01 5 35874637 35874637 A - IL7R Frame_Shift_Del p.R267Gfs*28 0.25 TCGA-BR-A4QL-01 5 3600734 3600734 G A IRX1 Missense_Mutation p.V442I 0.09 tolerated(0.25) benign(0.001) TCGA-BR-A4QL-01 5 36182090 36182090 G A SKP2 Missense_Mutation p.G411D 0.32 deleterious(0.01) probably_damaging(0.941) TCGA-BR-A4QL-01 5 38963142 38963142 G A RICTOR Nonsense_Mutation p.R468* 0.35 TCGA-BR-A4QL-01 5 41941319 41941319 T C FBXO4 Missense_Mutation p.L367P 0.33 deleterious(0) probably_damaging(0.999) TCGA-BR-A4QL-01 5 41941337 41941337 G A FBXO4 Missense_Mutation p.G373D 0.42 deleterious(0) probably_damaging(0.999) TCGA-BR-A4QL-01 5 43174881 43174881 C T ZNF131 Silent p.S472S 0.09 TCGA-BR-A4QL-01 5 52344542 52344542 T A ITGA2 Missense_Mutation p.V191E 0.37 deleterious(0) probably_damaging(1) TCGA-BR-A4QL-01 5 53814892 53814892 G A SNX18 Silent p.A370A 0.47 TCGA-BR-A4QL-01 5 54603263 54603263 T C DHX29 Missense_Mutation p.T47A 0.38 tolerated_low_confidence(0.73) benign(0) TCGA-BR-A4QL-01 5 54618225 54618225 G A SKIV2L2 Missense_Mutation p.E69K 0.35 tolerated(0.16) benign(0.001) TCGA-BR-A4QL-01 5 57753011 57753012 - A PLK2 Frame_Shift_Ins p.L335Ffs*12 0.35 TCGA-BR-A4QL-01 5 61643000 61643000 T C KIF2A Silent p.N36N 0.19 TCGA-BR-A4QL-01 5 66459717 66459718 AG - MAST4 Frame_Shift_Del p.K1574Efs*14 0.20 TCGA-BR-A4QL-01 5 71015160 71015160 G A CARTPT Missense_Mutation p.A14T 0.32 tolerated(0.18) probably_damaging(0.959) TCGA-BR-A4QL-01 5 74655087 74655087 C T HMGCR Silent p.N750N 0.73 TCGA-BR-A4QL-01 5 75871586 75871586 C T IQGAP2 Silent p.H150H 0.30 TCGA-BR-A4QL-01 5 77334885 77334885 G A AP3B1 Missense_Mutation p.H931Y 0.46 deleterious(0.01) benign(0.152) TCGA-BR-A4QL-01 5 7867738 7867738 T C FASTKD3 Missense_Mutation p.I153M 0.40 deleterious(0.03) benign(0.146) TCGA-BR-A4QL-01 5 79366474 79366474 C T THBS4 Silent p.C487C 0.35 TCGA-BR-A4QL-01 5 79970915 79970915 A - MSH3 Frame_Shift_Del p.K383Rfs*32 0.35 TCGA-BR-A4QL-01 5 82833213 82833213 C G VCAN Missense_Mutation p.A1464G 0.36 tolerated(0.09) benign(0.051) TCGA-BR-A4QL-01 5 82834710 82834710 C T VCAN Missense_Mutation p.A1963V 0.43 tolerated(0.23) benign(0.002) TCGA-BR-A4QL-01 5 82836247 82836247 A C VCAN Missense_Mutation p.K2475N 0.47 tolerated(0.19) benign(0.017) TCGA-BR-A4QL-01 5 83680199 83680199 G A EDIL3 5'UTR 0.30 TCGA-BR-A4QL-01 5 89701581 89701581 T - CETN3 Frame_Shift_Del p.A64Lfs*4 0.26 TCGA-BR-A4QL-01 5 90119297 90119297 G A GPR98 Missense_Mutation p.V5418M 0.37 benign(0) TCGA-BR-A4QL-01 5 94024237 94024237 G A ANKRD32 Silent p.G716G 0.30 TCGA-BR-A4QL-01 5 94901772 94901772 G A ARSK Missense_Mutation p.R66H 0.48 tolerated(0.8) benign(0.002) TCGA-BR-A4QL-01 5 95119641 95119641 A G RHOBTB3 Missense_Mutation p.I533V 0.09 tolerated(0.83) benign(0.001) TCGA-BR-A4QL-01 5 95119656 95119656 A - RHOBTB3 Frame_Shift_Del p.K539Rfs*53 0.30 TCGA-BR-A4QL-01 5 95234256 95234256 G A ELL2 Missense_Mutation p.R405W 0.31 tolerated(0.09) benign(0.004) TCGA-BR-A4QL-01 5 96244744 96244744 G A ERAP2 Missense_Mutation p.E698K 0.40 tolerated(0.36) benign(0.003) TCGA-BR-A4QL-01 6 102307246 102307247 AG - GRIK2 Frame_Shift_Del p.E469Vfs*10 0.26 TCGA-BR-A4QL-01 6 108985460 108985460 C T FOXO3 Missense_Mutation p.T475I 0.36 deleterious(0.01) possibly_damaging(0.466) TCGA-BR-A4QL-01 6 10956452 10956453 AA - SYCP2L Frame_Shift_Del p.K715Tfs*6 0.21 TCGA-BR-A4QL-01 6 109787639 109787639 G A ZBTB24 Silent p.D503D 0.33 TCGA-BR-A4QL-01 6 109796613 109796613 C T ZBTB24 Missense_Mutation p.R426Q 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-BR-A4QL-01 6 109818703 109818704 - AT AK9 Frame_Shift_Ins p.C1761Ffs*12 0.21 TCGA-BR-A4QL-01 6 111709248 111709248 A - REV3L Frame_Shift_Del p.Q302Rfs*15 0.31 TCGA-BR-A4QL-01 6 112400892 112400892 G A TUBE1 Missense_Mutation p.S131L 0.41 tolerated(0.1) benign(0.005) TCGA-BR-A4QL-01 6 116967058 116967058 T - ZUFSP Frame_Shift_Del p.N503Tfs*7 0.44 TCGA-BR-A4QL-01 6 117642517 117642517 T A ROS1 Missense_Mutation p.E1894D 0.38 tolerated(0.18) benign(0.098) TCGA-BR-A4QL-01 6 117662759 117662759 C T ROS1 Missense_Mutation p.R1569Q 0.31 tolerated(0.32) benign(0.001) TCGA-BR-A4QL-01 6 118014204 118014204 G T NUS1 Splice_Site p.X139_splice 0.38 TCGA-BR-A4QL-01 6 119344234 119344234 T - FAM184A Frame_Shift_Del p.K342Nfs*14 0.29 TCGA-BR-A4QL-01 6 12089463 12089463 A - HIVEP1 Frame_Shift_Del p.E32Kfs*17 0.28 TCGA-BR-A4QL-01 6 122720825 122720825 C T HSF2 5'UTR 0.47 TCGA-BR-A4QL-01 6 122753116 122753116 C T HSF2 Silent p.L454L 0.43 TCGA-BR-A4QL-01 6 128134568 128134568 T - THEMIS Frame_Shift_Del p.V407Wfs*2 0.25 TCGA-BR-A4QL-01 6 129511427 129511427 C T LAMA2 Silent p.C515C 0.45 TCGA-BR-A4QL-01 6 129921947 129921947 T - ARHGAP18 Frame_Shift_Del p.N471Ifs*3 0.27 TCGA-BR-A4QL-01 6 13206135 13206135 G - PHACTR1 Frame_Shift_Del p.P254Qfs*59 0.29 TCGA-BR-A4QL-01 6 13801587 13801587 G A MCUR1 Missense_Mutation p.A225V 0.57 tolerated(0.07) probably_damaging(0.982) TCGA-BR-A4QL-01 6 138619829 138619829 T C KIAA1244 Silent p.N1245N 0.37 TCGA-BR-A4QL-01 6 143094745 143094745 T - HIVEP2 Frame_Shift_Del p.G378Dfs*11 0.37 TCGA-BR-A4QL-01 6 150004891 150004891 G A LATS1 Missense_Mutation p.P445L 0.35 deleterious_low_confidence(0.03) benign(0.067) TCGA-BR-A4QL-01 6 150067677 150067677 G A NUP43 5'UTR 0.44 TCGA-BR-A4QL-01 6 151161247 151161247 G A PLEKHG1 Missense_Mutation p.A1125T 0.42 tolerated(0.77) benign(0.004) TCGA-BR-A4QL-01 6 151355726 151355726 A G MTHFD1L Missense_Mutation p.Y895C 0.36 deleterious(0) probably_damaging(0.992) TCGA-BR-A4QL-01 6 151766824 151766824 G A RMND1 Silent p.C41C 0.38 TCGA-BR-A4QL-01 6 151773568 151773569 TT - C6orf211 5'UTR 0.38 TCGA-BR-A4QL-01 6 152776589 152776590 - C SYNE1 Frame_Shift_Ins p.D955Gfs*11 0.28 TCGA-BR-A4QL-01 6 157527817 157527817 C - ARID1B Frame_Shift_Del p.L1850* 0.35 TCGA-BR-A4QL-01 6 158900957 158900957 C - TULP4 Frame_Shift_Del p.R403Afs*24 0.39 TCGA-BR-A4QL-01 6 158924181 158924181 C T TULP4 Silent p.D1162D 0.37 TCGA-BR-A4QL-01 6 159401904 159401904 G A RSPH3 Missense_Mutation p.A396V 0.40 deleterious(0) probably_damaging(0.99) TCGA-BR-A4QL-01 6 160461692 160461694 CCT - IGF2R In_Frame_Del p.L474del 0.39 TCGA-BR-A4QL-01 6 160864677 160864677 G A SLC22A3 Silent p.S471S 0.34 TCGA-BR-A4QL-01 6 160906847 160906847 G A LPAL2 Splice_Site 0.36 TCGA-BR-A4QL-01 6 163149154 163149154 T C PACRG Intron 0.49 TCGA-BR-A4QL-01 6 163899920 163899920 A - QKI Frame_Shift_Del p.K134Rfs*14 0.67 TCGA-BR-A4QL-01 6 167717522 167717522 G A UNC93A Silent p.S247S 0.35 TCGA-BR-A4QL-01 6 167754366 167754367 - T TTLL2 Frame_Shift_Ins p.S329Ffs*5 0.35 TCGA-BR-A4QL-01 6 17292117 17292117 T C RBM24 Missense_Mutation p.Y160H 0.66 tolerated(0.05) possibly_damaging(0.549) TCGA-BR-A4QL-01 6 24412566 24412566 C T MRS2 Silent p.L177L 0.64 TCGA-BR-A4QL-01 6 25606376 25606376 C T LRRC16A Missense_Mutation p.A1241V 0.30 tolerated_low_confidence(0.36) benign(0.001) TCGA-BR-A4QL-01 6 25845699 25845699 C T SLC17A3 Missense_Mutation p.V470I 0.37 tolerated(1) benign(0.002) TCGA-BR-A4QL-01 6 26108248 26108248 C T HIST1H1T Missense_Mutation p.R25Q 0.45 deleterious(0.01) possibly_damaging(0.886) TCGA-BR-A4QL-01 6 26108309 26108309 C T HIST1H1T Missense_Mutation p.V5M 0.40 deleterious(0.02) possibly_damaging(0.572) TCGA-BR-A4QL-01 6 30590656 30590656 C A MRPS18B Silent p.I134I 0.29 TCGA-BR-A4QL-01 6 30860096 30860096 G A DDR1 Silent p.T292T 0.32 TCGA-BR-A4QL-01 6 30883960 30883960 G A VARS2 Missense_Mutation p.R232Q 0.36 tolerated(0.36) benign(0.004) TCGA-BR-A4QL-01 6 30920773 30920773 G A DPCR1 Missense_Mutation p.R1354H 0.38 tolerated(0.3) possibly_damaging(0.483) TCGA-BR-A4QL-01 6 31127312 31127312 C - TCF19 Frame_Shift_Del p.A25Pfs*72 0.41 TCGA-BR-A4QL-01 6 31526079 31526079 C T NFKBIL1 Silent p.A279A 0.25 TCGA-BR-A4QL-01 6 31619438 31619438 C T BAG6 Missense_Mutation p.A35T 0.45 deleterious(0.03) benign(0.016) TCGA-BR-A4QL-01 6 31715180 31715180 C A MSH5 Nonsense_Mutation p.C261* 0.52 TCGA-BR-A4QL-01 6 31741016 31741016 C A VWA7 Intron 0.31 TCGA-BR-A4QL-01 6 32035444 32035444 C T TNXB Missense_Mutation p.V2180I 0.35 benign(0.159) TCGA-BR-A4QL-01 6 32035620 32035620 C T TNXB Missense_Mutation p.R2121H 0.37 benign(0.011) TCGA-BR-A4QL-01 6 32063940 32063940 G A TNXB Nonsense_Mutation p.R564* 0.55 TCGA-BR-A4QL-01 6 32172014 32172014 G A NOTCH4 Silent p.D1006D 0.43 TCGA-BR-A4QL-01 6 32407731 32407731 G A HLA-DRA Missense_Mutation p.A2T 0.07 tolerated(0.48) benign(0.015) TCGA-BR-A4QL-01 6 33163864 33163865 - C RXRB Intron 0.31 TCGA-BR-A4QL-01 6 33634933 33634933 C T ITPR3 Missense_Mutation p.R527C 0.27 deleterious(0.02) possibly_damaging(0.631) TCGA-BR-A4QL-01 6 33653503 33653503 G A ITPR3 Missense_Mutation p.E1856K 0.32 tolerated(0.25) benign(0.001) TCGA-BR-A4QL-01 6 34059859 34059859 G A GRM4 Silent p.Y179Y 0.44 TCGA-BR-A4QL-01 6 34100766 34100766 G A GRM4 Missense_Mutation p.R170C 0.35 deleterious(0) probably_damaging(0.991) TCGA-BR-A4QL-01 6 345898 345898 G A DUSP22 Missense_Mutation p.R78Q 0.09 deleterious(0.04) benign(0.22) TCGA-BR-A4QL-01 6 35214016 35214016 G A SCUBE3 Missense_Mutation p.R929Q 0.29 deleterious(0) probably_damaging(0.966) TCGA-BR-A4QL-01 6 35392205 35392205 G A PPARD Missense_Mutation p.V243M 0.30 deleterious(0.04) probably_damaging(0.996) TCGA-BR-A4QL-01 6 35704936 35704936 C T ARMC12 Silent p.S17S 0.41 TCGA-BR-A4QL-01 6 36442765 36442765 G A KCTD20 Silent p.T120T 0.33 TCGA-BR-A4QL-01 6 36710078 36710078 C T CPNE5 Silent p.T583T 0.11 TCGA-BR-A4QL-01 6 37605120 37605120 G - MDGA1 3'UTR 0.30 TCGA-BR-A4QL-01 6 38120035 38120035 G A ZFAND3 Missense_Mutation p.R185H 0.38 deleterious(0.01) probably_damaging(1) TCGA-BR-A4QL-01 6 3850382 3850382 C T FAM50B Missense_Mutation p.R113C 0.54 deleterious(0.03) benign(0.035) TCGA-BR-A4QL-01 6 38548022 38548022 G A BTBD9 Missense_Mutation p.R336W 0.36 deleterious(0) unknown(0) TCGA-BR-A4QL-01 6 38654677 38654677 A T GLO1 Missense_Mutation p.L53H 0.41 deleterious(0) probably_damaging(0.999) TCGA-BR-A4QL-01 6 39267230 39267230 G A KCNK17 Silent p.H324H 0.33 TCGA-BR-A4QL-01 6 39267459 39267459 C A KCNK17 Missense_Mutation p.W248L 0.31 deleterious(0) probably_damaging(1) TCGA-BR-A4QL-01 6 39856480 39856480 C T DAAM2 Missense_Mutation p.R696W 0.40 tolerated(0.05) probably_damaging(0.991) TCGA-BR-A4QL-01 6 4032686 4032687 - A PRPF4B Frame_Shift_Ins p.S314Ifs*5 0.22 TCGA-BR-A4QL-01 6 4087803 4087803 A T C6orf201 5'UTR 0.45 TCGA-BR-A4QL-01 6 41002639 41002639 G - UNC5CL Frame_Shift_Del p.Q59Nfs*2 0.32 TCGA-BR-A4QL-01 6 41250435 41250435 T C TREM1 Missense_Mutation p.Q35R 0.40 deleterious(0.01) possibly_damaging(0.607) TCGA-BR-A4QL-01 6 41621343 41621343 G A MDFI 3'UTR 0.35 TCGA-BR-A4QL-01 6 41704474 41704474 G C PGC 3'UTR 0.37 TCGA-BR-A4QL-01 6 42236784 42236784 C T TRERF1 Missense_Mutation p.R182H 0.06 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-BR-A4QL-01 6 42585024 42585024 G A UBR2 Missense_Mutation p.R410Q 0.39 deleterious(0.01) possibly_damaging(0.562) TCGA-BR-A4QL-01 6 42689775 42689775 G A PRPH2 Missense_Mutation p.P100S 0.38 deleterious(0.04) benign(0.017) TCGA-BR-A4QL-01 6 43018130 43018130 A - CUL7 Frame_Shift_Del p.W498Gfs*54 0.26 TCGA-BR-A4QL-01 6 43153844 43153844 A G CUL9 Missense_Mutation p.E301G 0.05 deleterious(0) probably_damaging(0.99) TCGA-BR-A4QL-01 6 43271815 43271815 G - SLC22A7 Frame_Shift_Del p.G477Afs*67 0.35 TCGA-BR-A4QL-01 6 43310528 43310528 G A ZNF318 Silent p.P1054P 0.42 TCGA-BR-A4QL-01 6 44272877 44272877 G A AARS2 Missense_Mutation p.A498V 0.34 deleterious(0.02) benign(0.342) TCGA-BR-A4QL-01 6 45390581 45390581 G T RUNX2 Nonsense_Mutation p.E104* 0.36 TCGA-BR-A4QL-01 6 46675819 46675820 - A PLA2G7 Frame_Shift_Ins p.I317Yfs*4 0.40 TCGA-BR-A4QL-01 6 52268150 52268150 C A PAQR8 Silent p.R47R 0.36 TCGA-BR-A4QL-01 6 52957325 52957325 G A FBXO9 Missense_Mutation p.R261Q 0.50 deleterious(0) possibly_damaging(0.897) TCGA-BR-A4QL-01 6 53385602 53385602 A C GCLC Silent p.A140A 0.42 TCGA-BR-A4QL-01 6 56917539 56917539 T C KIAA1586 Missense_Mutation p.V81A 0.39 tolerated_low_confidence(0.31) benign(0.002) TCGA-BR-A4QL-01 6 57012049 57012049 G A ZNF451 Missense_Mutation p.R389Q 0.41 tolerated(0.17) benign(0.004) TCGA-BR-A4QL-01 6 62604604 62604604 C T KHDRBS2 Missense_Mutation p.G249E 0.44 tolerated(0.11) possibly_damaging(0.617) TCGA-BR-A4QL-01 6 71546674 71546674 A - SMAP1 Frame_Shift_Del p.S205Vfs*15 0.28 TCGA-BR-A4QL-01 6 74117732 74117732 A T DDX43 Nonsense_Mutation p.K363* 0.32 TCGA-BR-A4QL-01 6 74229771 74229771 T C EEF1A1 5'UTR 0.38 TCGA-BR-A4QL-01 6 74304701 74304701 A - SLC17A5 3'UTR 0.28 TCGA-BR-A4QL-01 6 74351590 74351590 A - SLC17A5 Frame_Shift_Del p.Y117Mfs*17 0.32 TCGA-BR-A4QL-01 6 7565711 7565711 C T DSP Silent p.S299S 0.07 TCGA-BR-A4QL-01 6 7578041 7578041 C A DSP Silent p.T969T 0.43 TCGA-BR-A4QL-01 6 75799910 75799910 C T COL12A1 Missense_Mutation p.A2953T 0.32 benign(0.3) TCGA-BR-A4QL-01 6 75834938 75834938 A G COL12A1 Missense_Mutation p.L2171S 0.38 probably_damaging(0.999) TCGA-BR-A4QL-01 6 75890672 75890672 T C COL12A1 Missense_Mutation p.E716G 0.32 benign(0.21) TCGA-BR-A4QL-01 6 7609096 7609096 A - SNRNP48 Frame_Shift_Del p.I339Yfs*3 0.40 TCGA-BR-A4QL-01 6 76623869 76623869 C T MYO6 Missense_Mutation p.R1177C 0.34 deleterious(0) probably_damaging(0.998) TCGA-BR-A4QL-01 6 76624686 76624686 G A MYO6 Missense_Mutation p.R1272Q 0.38 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BR-A4QL-01 6 76713645 76713645 G A IMPG1 Silent p.A386A 0.34 TCGA-BR-A4QL-01 6 85447043 85447043 C T TBX18 Missense_Mutation p.C395Y 0.38 deleterious(0.01) benign(0) TCGA-BR-A4QL-01 6 85473658 85473658 G A TBX18 Missense_Mutation p.A81V 0.39 tolerated(0.3) benign(0.029) TCGA-BR-A4QL-01 6 88391420 88391420 T C AKIRIN2 Silent p.E99E 0.30 TCGA-BR-A4QL-01 7 100390105 100390105 C T ZAN Silent p.Y2596Y 0.37 TCGA-BR-A4QL-01 7 100405135 100405135 C T EPHB4 Missense_Mutation p.R729Q 0.47 deleterious(0.01) possibly_damaging(0.636) TCGA-BR-A4QL-01 7 101196619 101196619 G A COL26A1 Missense_Mutation p.V348M 0.46 tolerated(0.12) benign(0.081) TCGA-BR-A4QL-01 7 102087230 102087230 G C ORAI2 Missense_Mutation p.V166L 0.34 deleterious(0.02) probably_damaging(0.989) TCGA-BR-A4QL-01 7 102575025 102575025 C T LRRC17 Missense_Mutation p.P222L 0.34 tolerated(0.11) benign(0.007) TCGA-BR-A4QL-01 7 102584993 102584993 A - LRRC17 Frame_Shift_Del p.K424Nfs*12 0.29 TCGA-BR-A4QL-01 7 103185661 103185661 C T RELN Missense_Mutation p.G2145R 0.42 deleterious(0.03) possibly_damaging(0.901) TCGA-BR-A4QL-01 7 103197465 103197465 G A RELN Missense_Mutation p.T1919I 0.44 deleterious(0.04) benign(0.147) TCGA-BR-A4QL-01 7 1037311 1037311 G - C7orf50 Frame_Shift_Del p.L179Cfs*136 0.32 TCGA-BR-A4QL-01 7 103848459 103848459 C T ORC5 5'UTR 0.33 TCGA-BR-A4QL-01 7 1049627 1049627 G A C7orf50 Silent p.A94A 0.50 TCGA-BR-A4QL-01 7 105121515 105121515 T C PUS7 Missense_Mutation p.T387A 0.49 deleterious(0.01) possibly_damaging(0.895) TCGA-BR-A4QL-01 7 105516905 105516905 G T ATXN7L1 Missense_Mutation p.R34S 0.45 deleterious(0) probably_damaging(0.994) TCGA-BR-A4QL-01 7 106508275 106508275 G A PIK3CG Missense_Mutation p.R90Q 0.44 tolerated(0.4) benign(0.002) TCGA-BR-A4QL-01 7 107591745 107591745 A G LAMB1 Missense_Mutation p.M1106T 0.20 deleterious(0.02) possibly_damaging(0.464) TCGA-BR-A4QL-01 7 107872810 107872810 G A NRCAM Silent p.R129R 0.06 TCGA-BR-A4QL-01 7 112461659 112461659 A - C7orf60 3'UTR 0.53 TCGA-BR-A4QL-01 7 116165024 116165024 C - CAV1 5'UTR 0.28 TCGA-BR-A4QL-01 7 123142741 123142741 A G IQUB Silent p.I311I 0.09 TCGA-BR-A4QL-01 7 123277059 123277059 A - ASB15 3'UTR 0.35 TCGA-BR-A4QL-01 7 127338982 127338982 C A SND1 Silent p.R135R 0.41 TCGA-BR-A4QL-01 7 127669747 127669747 C T LRRC4 Missense_Mutation p.R316Q 0.29 tolerated(0.06) benign(0.046) TCGA-BR-A4QL-01 7 127669830 127669830 C T LRRC4 Silent p.P288P 0.25 TCGA-BR-A4QL-01 7 128359088 128359088 C T FAM71F1 Missense_Mutation p.T213M 0.34 deleterious(0) probably_damaging(0.968) TCGA-BR-A4QL-01 7 128486812 128486812 G A FLNC Missense_Mutation p.G1381R 0.29 deleterious(0) probably_damaging(0.993) TCGA-BR-A4QL-01 7 130052065 130052065 T - CEP41 Frame_Shift_Del p.D55Mfs*7 0.28 TCGA-BR-A4QL-01 7 134928082 134928082 C A STRA8 Silent p.S113S 0.34 TCGA-BR-A4QL-01 7 137028250 137028250 G A PTN 5'UTR 0.42 TCGA-BR-A4QL-01 7 137294333 137294333 C T DGKI Missense_Mutation p.R339Q 0.41 deleterious(0.01) possibly_damaging(0.88) TCGA-BR-A4QL-01 7 13975472 13975473 - G ETV1 Frame_Shift_Ins p.T139Hfs*24 0.39 TCGA-BR-A4QL-01 7 140534454 140534454 T C BRAF Silent p.Q153Q 0.40 TCGA-BR-A4QL-01 7 141438980 141438980 C A SSBP1 Missense_Mutation p.P5H 0.39 deleterious(0.03) possibly_damaging(0.592) TCGA-BR-A4QL-01 7 142001204 142001204 G A TRBV2 Missense_Mutation p.R66Q 0.48 TCGA-BR-A4QL-01 7 143400364 143400364 G A FAM115C Missense_Mutation p.V93M 0.20 deleterious(0.02) possibly_damaging(0.822) TCGA-BR-A4QL-01 7 147183036 147183036 C T CNTNAP2 Silent p.P560P 0.34 TCGA-BR-A4QL-01 7 148978785 148978785 C T ZNF783 Missense_Mutation p.P331L 0.17 tolerated(0.27) benign(0.001) TCGA-BR-A4QL-01 7 148979012 148979012 C T ZNF783 Missense_Mutation p.R407C 0.28 tolerated(0.15) benign(0.047) TCGA-BR-A4QL-01 7 149430494 149430494 C T KRBA1 Silent p.L816L 0.50 TCGA-BR-A4QL-01 7 149485991 149485991 G A SSPO RNA 0.48 TCGA-BR-A4QL-01 7 150164231 150164232 - A GIMAP8 Frame_Shift_Ins p.N151Kfs*12 0.38 TCGA-BR-A4QL-01 7 150554844 150554844 G A AOC1 Missense_Mutation p.R429Q 0.55 deleterious(0.01) possibly_damaging(0.849) TCGA-BR-A4QL-01 7 150771378 150771378 C T SLC4A2 Missense_Mutation p.R930W 0.40 deleterious(0.04) probably_damaging(0.989) TCGA-BR-A4QL-01 7 151791468 151791468 A - GALNT11 Frame_Shift_Del p.K54Nfs*26 0.30 TCGA-BR-A4QL-01 7 151877839 151877839 T C KMT2C Missense_Mutation p.N2369S 0.38 benign(0.014) TCGA-BR-A4QL-01 7 154561207 154561207 C T DPP6 Missense_Mutation p.R322C 0.48 tolerated(0.07) probably_damaging(0.976) TCGA-BR-A4QL-01 7 154684370 154684370 C T DPP6 3'UTR 0.58 TCGA-BR-A4QL-01 7 154862986 154862986 C T HTR5A-AS1 Missense_Mutation p.V10M 0.37 deleterious_low_confidence(0.02) possibly_damaging(0.791) TCGA-BR-A4QL-01 7 155094088 155094088 C T INSIG1 Missense_Mutation p.T222M 0.44 deleterious(0) probably_damaging(1) TCGA-BR-A4QL-01 7 155301697 155301697 C T CNPY1 Silent p.T12T 0.35 TCGA-BR-A4QL-01 7 155534589 155534589 G A RBM33 Missense_Mutation p.R709H 0.35 deleterious(0) unknown(0) TCGA-BR-A4QL-01 7 157177650 157177650 T A DNAJB6 Missense_Mutation p.S190T 0.08 deleterious(0.03) unknown(0) TCGA-BR-A4QL-01 7 158526907 158526907 C T ESYT2 Silent p.A891A 0.40 TCGA-BR-A4QL-01 7 18688172 18688172 C T HDAC9 Missense_Mutation p.R445C 0.36 deleterious(0.04) probably_damaging(0.996) TCGA-BR-A4QL-01 7 20197933 20197933 A T MACC1 Missense_Mutation p.I684N 0.24 tolerated(0.38) benign(0.303) TCGA-BR-A4QL-01 7 21469089 21469089 G A SP4 Nonsense_Mutation p.W102* 0.37 TCGA-BR-A4QL-01 7 22233548 22233548 G A RAPGEF5 Missense_Mutation p.A214V 0.29 tolerated(0.23) benign(0.001) TCGA-BR-A4QL-01 7 23300296 23300296 A G GPNMB Missense_Mutation p.T308A 0.34 deleterious(0.02) possibly_damaging(0.714) TCGA-BR-A4QL-01 7 2687534 2687534 C T TTYH3 Intron 0.48 TCGA-BR-A4QL-01 7 27140390 27140390 A - HOXA2 Frame_Shift_Del p.F362Lfs*13 0.29 TCGA-BR-A4QL-01 7 31013640 31013640 C T GHRHR Missense_Mutation p.T213I 0.43 tolerated(0.62) benign(0.34) TCGA-BR-A4QL-01 7 31104447 31104448 - C ADCYAP1R1 Frame_Shift_Ins p.A20Cfs*5 0.32 TCGA-BR-A4QL-01 7 32956879 32956879 C A RP9P RNA 0.78 TCGA-BR-A4QL-01 7 38402916 38402916 A G TRGV2 Missense_Mutation p.L5P 0.26 tolerated(0.2) benign(0.041) TCGA-BR-A4QL-01 7 4050642 4050642 A G SDK1 Missense_Mutation p.T726A 0.36 tolerated(0.06) benign(0.004) TCGA-BR-A4QL-01 7 42005852 42005852 G A GLI3 Missense_Mutation p.P940L 0.37 deleterious(0) probably_damaging(0.999) TCGA-BR-A4QL-01 7 4247845 4247845 A C SDK1 Missense_Mutation p.S1777R 0.51 tolerated(0.1) possibly_damaging(0.786) TCGA-BR-A4QL-01 7 42959221 42959221 C A PSMA2 Intron 0.50 TCGA-BR-A4QL-01 7 43503275 43503275 C T HECW1 Nonsense_Mutation p.R890* 0.30 TCGA-BR-A4QL-01 7 43916923 43916923 A G URGCP Silent p.F713F 0.36 TCGA-BR-A4QL-01 7 44105054 44105054 C T PGAM2 Nonsense_Mutation p.W25* 0.44 TCGA-BR-A4QL-01 7 44186118 44186118 G A GCK Silent p.S322S 0.48 TCGA-BR-A4QL-01 7 44193002 44193002 G A GCK Missense_Mutation p.R37W 0.37 deleterious(0) probably_damaging(0.979) TCGA-BR-A4QL-01 7 44578499 44578499 C T NPC1L1 Silent p.T499T 0.40 TCGA-BR-A4QL-01 7 45010276 45010276 G - MYO1G Frame_Shift_Del p.R378Gfs*51 0.33 TCGA-BR-A4QL-01 7 5254050 5254050 C A WIPI2 Intron 0.41 TCGA-BR-A4QL-01 7 55238900 55238900 C T EGFR Missense_Mutation p.T638M 0.29 tolerated(0.11) benign(0) TCGA-BR-A4QL-01 7 57522222 57522222 C A ZNF716 Nonsense_Mutation p.C32* 0.35 TCGA-BR-A4QL-01 7 5781254 5781254 C T RNF216 Missense_Mutation p.G132S 0.35 tolerated_low_confidence(0.34) benign(0.008) TCGA-BR-A4QL-01 7 6194071 6194071 C T USP42 Silent p.S962S 0.43 TCGA-BR-A4QL-01 7 6369902 6369902 G A FAM220A 3'UTR 0.50 TCGA-BR-A4QL-01 7 6449620 6449620 C T DAGLB Missense_Mutation p.E623K 0.41 deleterious(0.05) probably_damaging(0.997) TCGA-BR-A4QL-01 7 6456287 6456287 G A DAGLB Silent p.Y466Y 0.38 TCGA-BR-A4QL-01 7 6621849 6621849 T - ZDHHC4 Frame_Shift_Del p.F115Sfs*3 0.31 TCGA-BR-A4QL-01 7 70597962 70597962 C A WBSCR17 Silent p.P58P 0.42 TCGA-BR-A4QL-01 7 73118587 73118587 C T STX1A Splice_Site p.X120_splice 0.44 TCGA-BR-A4QL-01 7 73184217 73184217 C G CLDN3 Missense_Mutation p.V55L 0.39 deleterious(0.01) benign(0.236) TCGA-BR-A4QL-01 7 73480300 73480300 G - ELN Frame_Shift_Del p.G688Vfs*63 0.29 TCGA-BR-A4QL-01 7 73535598 73535598 C T LIMK1 Silent p.S637S 0.27 TCGA-BR-A4QL-01 7 73753186 73753186 C T CLIP2 Missense_Mutation p.T177M 0.40 tolerated(0.07) benign(0.07) TCGA-BR-A4QL-01 7 75070845 75070845 G A POM121C 5'UTR 0.50 TCGA-BR-A4QL-01 7 75511493 75511493 G A RHBDD2 Silent p.S175S 0.09 TCGA-BR-A4QL-01 7 83029431 83029431 T - SEMA3E Frame_Shift_Del p.T427Qfs*7 0.31 TCGA-BR-A4QL-01 7 86469103 86469103 C T GRM3 Missense_Mutation p.T758M 0.39 deleterious(0.02) possibly_damaging(0.85) TCGA-BR-A4QL-01 7 87092178 87092178 G A ABCB4 Missense_Mutation p.T61I 0.40 tolerated(0.14) benign(0.097) TCGA-BR-A4QL-01 7 87150160 87150160 G A ABCB1 Silent p.T906T 0.36 TCGA-BR-A4QL-01 7 91708607 91708607 A G AKAP9 Missense_Mutation p.Q2387R 0.39 possibly_damaging(0.49) TCGA-BR-A4QL-01 7 91712892 91712892 C T AKAP9 Missense_Mutation p.H2857Y 0.42 possibly_damaging(0.628) TCGA-BR-A4QL-01 7 91936795 91936795 C T ANKIB1 Missense_Mutation p.A104V 0.35 tolerated(0.05) benign(0.097) TCGA-BR-A4QL-01 7 91936914 91936914 A - ANKIB1 Frame_Shift_Del p.N146Tfs*12 0.29 TCGA-BR-A4QL-01 7 94174999 94174999 A - CASD1 Frame_Shift_Del p.A543Qfs*13 0.38 TCGA-BR-A4QL-01 7 94293052 94293052 C T PEG10 Missense_Mutation p.R62C 0.22 tolerated_low_confidence(0.18) benign(0) TCGA-BR-A4QL-01 7 96650268 96650268 G A DLX5 Missense_Mutation p.S217L 0.43 deleterious(0) possibly_damaging(0.885) TCGA-BR-A4QL-01 7 97800879 97800879 C T LMTK2 Silent p.S228S 0.33 TCGA-BR-A4QL-01 7 97850995 97850995 C T TECPR1 Silent p.S1045S 0.35 TCGA-BR-A4QL-01 7 98490105 98490105 G A TRRAP Missense_Mutation p.R107H 0.41 possibly_damaging(0.522) TCGA-BR-A4QL-01 7 98636091 98636091 G A SMURF1 Silent p.F562F 0.33 TCGA-BR-A4QL-01 7 98655069 98655069 A C SMURF1 Missense_Mutation p.N103K 0.47 tolerated(0.05) possibly_damaging(0.625) TCGA-BR-A4QL-01 7 99688088 99688088 C T COPS6 Missense_Mutation p.S134L 0.36 tolerated(0.16) benign(0.035) TCGA-BR-A4QL-01 8 101051172 101051172 C T RGS22 Missense_Mutation p.C718Y 0.20 deleterious(0.05) probably_damaging(0.999) TCGA-BR-A4QL-01 8 101146187 101146187 A G FBXO43 Missense_Mutation p.L657P 0.29 deleterious(0) probably_damaging(0.974) TCGA-BR-A4QL-01 8 102678915 102678915 C T GRHL2 Missense_Mutation p.T621M 0.35 deleterious(0.03) possibly_damaging(0.588) TCGA-BR-A4QL-01 8 103289349 103289349 T - UBR5 Frame_Shift_Del p.E2121Kfs*28 0.22 TCGA-BR-A4QL-01 8 103323682 103323682 G T UBR5 Missense_Mutation p.P821T 0.33 deleterious(0) probably_damaging(0.991) TCGA-BR-A4QL-01 8 105360820 105360821 - T DCSTAMP Frame_Shift_Ins p.W15Lfs*79 0.25 TCGA-BR-A4QL-01 8 105360884 105360884 T C DCSTAMP Missense_Mutation p.V35A 0.28 tolerated(0.08) benign(0.025) TCGA-BR-A4QL-01 8 105368454 105368454 C T DCSTAMP 3'UTR 0.21 TCGA-BR-A4QL-01 8 105509257 105509257 A G LRP12 Missense_Mutation p.L508P 0.20 deleterious(0) probably_damaging(0.999) TCGA-BR-A4QL-01 8 10583281 10583281 C T SOX7 Silent p.T430T 0.17 TCGA-BR-A4QL-01 8 10690428 10690428 C A SOX7 Nonsense_Mutation p.G66* 0.30 TCGA-BR-A4QL-01 8 110980553 110980553 G A KCNV1 Missense_Mutation p.P423S 0.29 deleterious(0) probably_damaging(0.999) TCGA-BR-A4QL-01 8 113318290 113318290 C T CSMD3 Missense_Mutation p.V2673I 0.31 tolerated(0.34) benign(0.007) TCGA-BR-A4QL-01 8 114389077 114389077 T C CSMD3 Intron 0.30 TCGA-BR-A4QL-01 8 117657193 117657193 T C EIF3H 3'UTR 0.23 TCGA-BR-A4QL-01 8 118830694 118830694 C T EXT1 Missense_Mutation p.V538I 0.22 tolerated(0.23) benign(0.396) TCGA-BR-A4QL-01 8 12042911 12042911 G A FAM86B1 Missense_Mutation p.T255M 0.27 deleterious(0.02) probably_damaging(0.958) TCGA-BR-A4QL-01 8 120612982 120612982 A G ENPP2 Missense_Mutation p.V303A 0.21 tolerated(0.07) benign(0.105) TCGA-BR-A4QL-01 8 121013857 121013857 A - DEPTOR Frame_Shift_Del p.K234Sfs*15 0.28 TCGA-BR-A4QL-01 8 121015280 121015280 C T DEPTOR Silent p.G285G 0.22 TCGA-BR-A4QL-01 8 124335279 124335279 T - ATAD2 Frame_Shift_Del p.S1344Vfs*15 0.24 TCGA-BR-A4QL-01 8 125080031 125080031 A - FER1L6 Frame_Shift_Del p.G1237Afs*10 0.26 TCGA-BR-A4QL-01 8 125565529 125565529 T C MTSS1 Missense_Mutation p.T658A 0.21 tolerated(0.76) benign(0) TCGA-BR-A4QL-01 8 12594270 12594270 T A LONRF1 Missense_Mutation p.Y464F 0.24 tolerated(0.7) benign(0.001) TCGA-BR-A4QL-01 8 126044624 126044624 C T KIAA0196 Missense_Mutation p.R1065Q 0.19 tolerated(0.07) benign(0.302) TCGA-BR-A4QL-01 8 128750777 128750777 G A MYC Missense_Mutation p.G105D 0.24 deleterious(0.05) possibly_damaging(0.837) TCGA-BR-A4QL-01 8 131149264 131149264 C T ASAP1 Silent p.K367K 0.22 TCGA-BR-A4QL-01 8 131792669 131792669 C A ADCY8 Missense_Mutation p.Q1241H 0.22 tolerated_low_confidence(0.38) possibly_damaging(0.859) TCGA-BR-A4QL-01 8 131880110 131880110 C A ADCY8 Missense_Mutation p.S731I 0.17 tolerated(0.4) benign(0.027) TCGA-BR-A4QL-01 8 13357421 13357421 G A DLC1 Missense_Mutation p.R54C 0.22 tolerated_low_confidence(0.07) benign(0.002) TCGA-BR-A4QL-01 8 133911046 133911046 C T TG Missense_Mutation p.P1074L 0.37 tolerated(0.25) benign(0.013) TCGA-BR-A4QL-01 8 135521887 135521887 G A ZFAT Missense_Mutation p.P1156L 0.25 deleterious(0.04) probably_damaging(0.997) TCGA-BR-A4QL-01 8 13947855 13947855 A G SGCZ 3'UTR 0.17 TCGA-BR-A4QL-01 8 139703108 139703108 C T COL22A1 Missense_Mutation p.G922R 0.33 unknown(0) TCGA-BR-A4QL-01 8 141525479 141525479 G A CHRAC1 3'UTR 0.21 TCGA-BR-A4QL-01 8 141561492 141561492 C T AGO2 Missense_Mutation p.R438Q 0.22 deleterious(0.04) possibly_damaging(0.88) TCGA-BR-A4QL-01 8 141889676 141889676 G A PTK2 Missense_Mutation p.R86C 0.25 deleterious(0) probably_damaging(0.997) TCGA-BR-A4QL-01 8 142178549 142178549 A G DENND3 Missense_Mutation p.M654V 0.24 tolerated(1) benign(0) TCGA-BR-A4QL-01 8 142222398 142222398 C T SLC45A4 Silent p.P682P 0.20 TCGA-BR-A4QL-01 8 142222470 142222470 C T SLC45A4 Silent p.T658T 0.18 TCGA-BR-A4QL-01 8 142446116 142446116 G A PTP4A3 3'Flank 0.17 TCGA-BR-A4QL-01 8 143745980 143745980 C T JRK RNA 0.32 TCGA-BR-A4QL-01 8 143996616 143996616 A T CYP11B2 Missense_Mutation p.D147E 0.09 tolerated(0.91) benign(0.008) TCGA-BR-A4QL-01 8 144239836 144239836 A - LY6H Frame_Shift_Del p.F106Sfs*5 0.22 TCGA-BR-A4QL-01 8 144397975 144397975 T C TOP1MT Missense_Mutation p.E492G 0.31 tolerated(0.13) benign(0.209) TCGA-BR-A4QL-01 8 144463997 144463997 C T RHPN1 Silent p.G552G 0.23 TCGA-BR-A4QL-01 8 144885638 144885638 G A SCRIB Missense_Mutation p.A1173V 0.18 possibly_damaging(0.81) TCGA-BR-A4QL-01 8 144890805 144890805 C - SCRIB Frame_Shift_Del p.A697Pfs*20 0.29 TCGA-BR-A4QL-01 8 144945127 144945127 C T EPPK1 Silent p.K765K 0.20 TCGA-BR-A4QL-01 8 144991738 144991738 G A PLEC Missense_Mutation p.S4221L 0.33 probably_damaging(1) TCGA-BR-A4QL-01 8 144998487 144998487 C T PLEC Silent p.A2007A 0.27 TCGA-BR-A4QL-01 8 145051982 145051982 C T PARP10 Silent p.K916K 0.32 TCGA-BR-A4QL-01 8 145059956 145059956 G A PARP10 Silent p.C123C 0.22 TCGA-BR-A4QL-01 8 145101650 145101650 G A SPATC1 Silent p.A523A 0.26 TCGA-BR-A4QL-01 8 145113475 145113475 C A OPLAH Missense_Mutation p.C236F 0.24 deleterious(0) possibly_damaging(0.873) TCGA-BR-A4QL-01 8 145619493 145619493 T C CPSF1 Missense_Mutation p.Y1256C 0.26 deleterious(0) probably_damaging(0.992) TCGA-BR-A4QL-01 8 145623706 145623706 C T CPSF1 Missense_Mutation p.R627H 0.27 deleterious(0.05) possibly_damaging(0.625) TCGA-BR-A4QL-01 8 145640738 145640738 G A SLC39A4 Silent p.G180G 0.15 TCGA-BR-A4QL-01 8 145735316 145735316 C A MFSD3 Silent p.P200P 0.25 TCGA-BR-A4QL-01 8 145757727 145757727 C T ARHGAP39 Nonsense_Mutation p.W981* 0.31 TCGA-BR-A4QL-01 8 17198880 17198880 G A MTMR7 Missense_Mutation p.R242W 0.19 deleterious(0) probably_damaging(0.955) TCGA-BR-A4QL-01 8 17810569 17810569 C T PCM1 Missense_Mutation p.R388C 0.22 tolerated(0.09) benign(0.398) TCGA-BR-A4QL-01 8 1876637 1876637 G A ARHGEF10 Silent p.S914S 0.27 TCGA-BR-A4QL-01 8 1900959 1900959 G A ARHGEF10 Silent p.P1162P 0.24 TCGA-BR-A4QL-01 8 20036930 20036930 C T SLC18A1 Missense_Mutation p.G64S 0.20 tolerated(0.68) benign(0.002) TCGA-BR-A4QL-01 8 2017398 2017398 G A MYOM2 Missense_Mutation p.A219T 0.41 deleterious(0) possibly_damaging(0.825) TCGA-BR-A4QL-01 8 21977305 21977305 C T HR Missense_Mutation p.R982H 0.27 tolerated(0.27) benign(0.001) TCGA-BR-A4QL-01 8 22006340 22006340 C T LGI3 Missense_Mutation p.R327H 0.31 tolerated(0.05) probably_damaging(0.98) TCGA-BR-A4QL-01 8 22079224 22079224 C T PHYHIP Missense_Mutation p.R212H 0.11 tolerated(0.44) benign(0.008) TCGA-BR-A4QL-01 8 22175773 22175773 A T PIWIL2 Missense_Mutation p.L796F 0.06 deleterious(0) probably_damaging(0.987) TCGA-BR-A4QL-01 8 22424653 22424653 G A SORBS3 Missense_Mutation p.G424S 0.30 deleterious(0) probably_damaging(1) TCGA-BR-A4QL-01 8 22428603 22428603 C T SORBS3 Missense_Mutation p.R538C 0.29 deleterious(0.02) benign(0.033) TCGA-BR-A4QL-01 8 22548121 22548121 C T EGR3 Silent p.A343A 0.25 TCGA-BR-A4QL-01 8 22864673 22864673 G - RHOBTB2 Frame_Shift_Del p.G329Afs*88 0.27 TCGA-BR-A4QL-01 8 22864803 22864803 G A RHOBTB2 Missense_Mutation p.E371K 0.26 tolerated(0.31) benign(0.024) TCGA-BR-A4QL-01 8 23106740 23106740 G A CHMP7 Missense_Mutation p.R106Q 0.27 deleterious(0.02) possibly_damaging(0.753) TCGA-BR-A4QL-01 8 23159567 23159567 G A LOXL2 Silent p.D702D 0.30 TCGA-BR-A4QL-01 8 23185998 23185998 G A LOXL2 Silent p.T349T 0.20 TCGA-BR-A4QL-01 8 26218507 26218507 T C PPP2R2A Silent p.P169P 0.22 TCGA-BR-A4QL-01 8 27289871 27289871 C - PTK2B Frame_Shift_Del p.Q329Rfs*10 0.25 TCGA-BR-A4QL-01 8 27301752 27301752 G A PTK2B Silent p.P726P 0.28 TCGA-BR-A4QL-01 8 27462724 27462724 G A CLU Silent p.R182R 0.18 TCGA-BR-A4QL-01 8 27634456 27634456 T - ESCO2 Frame_Shift_Del p.F212Lfs*35 0.23 TCGA-BR-A4QL-01 8 28409242 28409242 T - FZD3 Frame_Shift_Del p.H512Mfs*8 0.28 TCGA-BR-A4QL-01 8 3081363 3081363 G T CSMD1 Missense_Mutation p.P1458T 0.28 probably_damaging(0.939) TCGA-BR-A4QL-01 8 3141845 3141845 G A CSMD1 Missense_Mutation p.T1325M 0.21 probably_damaging(0.988) TCGA-BR-A4QL-01 8 3224649 3224649 G A CSMD1 Missense_Mutation p.T1007M 0.39 possibly_damaging(0.873) TCGA-BR-A4QL-01 8 33354754 33354755 - G MAK16 Frame_Shift_Ins p.K217Efs*9 0.21 TCGA-BR-A4QL-01 8 35583896 35583897 - C UNC5D Frame_Shift_Ins p.H512Pfs*8 0.27 TCGA-BR-A4QL-01 8 36691163 36691163 C G KCNU1 Missense_Mutation p.L400V 0.12 deleterious(0) probably_damaging(0.998) TCGA-BR-A4QL-01 8 36793082 36793082 C A KCNU1 Missense_Mutation p.L1032I 0.32 deleterious(0.02) possibly_damaging(0.874) TCGA-BR-A4QL-01 8 37702233 37702233 T C BRF2 Silent p.L345L 0.34 TCGA-BR-A4QL-01 8 37702549 37702549 G A BRF2 Missense_Mutation p.A240V 0.33 tolerated(0.23) benign(0.002) TCGA-BR-A4QL-01 8 37729779 37729779 G A RAB11FIP1 Silent p.N847N 0.24 TCGA-BR-A4QL-01 8 3855509 3855509 G A CSMD1 Missense_Mutation p.T245I 0.27 probably_damaging(0.999) TCGA-BR-A4QL-01 8 39782815 39782815 G - IDO1 Frame_Shift_Del p.G262Afs*34 0.27 TCGA-BR-A4QL-01 8 41519420 41519420 C T ANK1 Missense_Mutation p.A1881T 0.22 tolerated_low_confidence(0.57) benign(0.009) TCGA-BR-A4QL-01 8 41792210 41792210 A T KAT6A Missense_Mutation p.S1176R 0.31 benign(0.138) TCGA-BR-A4QL-01 8 41906068 41906068 A C KAT6A Missense_Mutation p.F143C 0.38 probably_damaging(0.99) TCGA-BR-A4QL-01 8 42294547 42294547 C T SLC20A2 Missense_Mutation p.A495T 0.19 deleterious(0) probably_damaging(0.999) TCGA-BR-A4QL-01 8 42716955 42716955 T C RNF170 Missense_Mutation p.Q147R 0.33 tolerated(0.21) benign(0.001) TCGA-BR-A4QL-01 8 48776075 48776075 C T PRKDC Missense_Mutation p.V1878M 0.26 possibly_damaging(0.63) TCGA-BR-A4QL-01 8 49647757 49647757 C T EFCAB1 5'UTR 0.31 TCGA-BR-A4QL-01 8 52321350 52321350 G A PXDNL Missense_Mutation p.A945V 0.18 tolerated(0.18) benign(0.108) TCGA-BR-A4QL-01 8 53568735 53568735 T - RB1CC1 Frame_Shift_Del p.K1218Nfs*13 0.24 TCGA-BR-A4QL-01 8 54628547 54628547 G - ATP6V1H Frame_Shift_Del p.Q477Rfs*36 0.22 TCGA-BR-A4QL-01 8 56015040 56015040 G T XKR4 5'UTR 0.28 TCGA-BR-A4QL-01 8 59059293 59059293 G A FAM110B Silent p.T168T 0.34 TCGA-BR-A4QL-01 8 61734586 61734586 C T CHD7 Nonsense_Mutation p.R947* 0.15 TCGA-BR-A4QL-01 8 61769311 61769311 G A CHD7 Missense_Mutation p.R2491H 0.26 possibly_damaging(0.469) TCGA-BR-A4QL-01 8 64098806 64098806 T C YTHDF3 Silent p.A78A 0.23 TCGA-BR-A4QL-01 8 65493427 65493427 C T BHLHE22 Missense_Mutation p.T27I 0.21 deleterious_low_confidence(0) benign(0.032) TCGA-BR-A4QL-01 8 65494354 65494354 C T BHLHE22 Missense_Mutation p.P336L 0.36 deleterious(0) benign(0.287) TCGA-BR-A4QL-01 8 66989096 66989096 C A DNAJC5B Missense_Mutation p.S107R 0.27 deleterious(0.02) possibly_damaging(0.739) TCGA-BR-A4QL-01 8 68076631 68076631 A - CSPP1 Frame_Shift_Del p.N903Mfs*2 0.31 TCGA-BR-A4QL-01 8 69445431 69445431 A - C8orf34 Intron 0.38 TCGA-BR-A4QL-01 8 70981995 70981995 G A PRDM14 Missense_Mutation p.P34L 0.11 tolerated(0.45) benign(0.002) TCGA-BR-A4QL-01 8 71074996 71074996 G A NCOA2 Missense_Mutation p.A309V 0.27 tolerated(0.5) benign(0.011) TCGA-BR-A4QL-01 8 71495950 71495950 G A TRAM1 Silent p.G275G 0.21 TCGA-BR-A4QL-01 8 72127878 72127878 G A EYA1 Silent p.A482A 0.23 TCGA-BR-A4QL-01 8 72964968 72964968 G A TRPA1 Silent p.G559G 0.23 TCGA-BR-A4QL-01 8 77617336 77617337 - A ZFHX4 Frame_Shift_Ins p.S341Ifs*30 0.27 TCGA-BR-A4QL-01 8 77767850 77767850 G A ZFHX4 Missense_Mutation p.R2898H 0.24 probably_damaging(0.993) TCGA-BR-A4QL-01 8 8235431 8235431 C T SGK223 Missense_Mutation p.G163D 0.21 possibly_damaging(0.722) TCGA-BR-A4QL-01 8 85799864 85799864 G C RALYL Missense_Mutation p.E250D 0.28 tolerated(0.65) benign(0.001) TCGA-BR-A4QL-01 8 86021867 86021867 G A LRRCC1 Missense_Mutation p.V48I 0.18 tolerated(0.67) benign(0) TCGA-BR-A4QL-01 8 88886149 88886149 C A DCAF4L2 Missense_Mutation p.K17N 0.25 deleterious(0) possibly_damaging(0.493) TCGA-BR-A4QL-01 8 89086899 89086899 G A MMP16 Missense_Mutation p.R386W 0.23 deleterious(0) probably_damaging(0.956) TCGA-BR-A4QL-01 8 89339517 89339518 - A MMP16 5'UTR 0.29 TCGA-BR-A4QL-01 8 90937019 90937019 G A OSGIN2 Silent p.A303A 0.23 TCGA-BR-A4QL-01 8 92352747 92352747 A - SLC26A7 Frame_Shift_Del p.K333Nfs*20 0.26 TCGA-BR-A4QL-01 8 94713478 94713478 C T FAM92A1 Missense_Mutation p.T18I 0.42 deleterious(0.02) benign(0.148) TCGA-BR-A4QL-01 8 95837126 95837126 G A INTS8 Missense_Mutation p.A46T 0.22 tolerated(0.27) benign(0.006) TCGA-BR-A4QL-01 8 9627729 9627729 A G TNKS Missense_Mutation p.N1285S 0.23 deleterious(0.02) possibly_damaging(0.804) TCGA-BR-A4QL-01 8 9627753 9627753 T C TNKS Missense_Mutation p.V1293A 0.18 deleterious(0) probably_damaging(0.969) TCGA-BR-A4QL-01 8 97614732 97614732 G T SDC2 Missense_Mutation p.Q94H 0.27 tolerated(0.25) benign(0.032) TCGA-BR-A4QL-01 8 98290125 98290125 G A TSPYL5 5'UTR 0.21 TCGA-BR-A4QL-01 9 107289041 107289041 A G OR13C4 Silent p.L150L 0.44 TCGA-BR-A4QL-01 9 107548581 107548582 - T ABCA1 Frame_Shift_Ins p.N2133Kfs*2 0.32 TCGA-BR-A4QL-01 9 107586833 107586833 A G ABCA1 Missense_Mutation p.Y857H 0.40 tolerated(0.07) probably_damaging(0.992) TCGA-BR-A4QL-01 9 109687846 109687846 A G ZNF462 Silent p.P551P 0.32 TCGA-BR-A4QL-01 9 109689202 109689202 G A ZNF462 Silent p.T1003T 0.50 TCGA-BR-A4QL-01 9 109746636 109746636 C T ZNF462 Silent p.Y2334Y 0.29 TCGA-BR-A4QL-01 9 111625268 111625268 C T ACTL7A Silent p.G222G 0.47 TCGA-BR-A4QL-01 9 112017946 112017946 C T EPB41L4B Silent p.E338E 0.32 TCGA-BR-A4QL-01 9 112899061 112899061 C T PALM2-AKAP2 Missense_Mutation p.R413C 0.39 deleterious(0.02) benign(0.241) TCGA-BR-A4QL-01 9 112899946 112899946 G A PALM2-AKAP2 Missense_Mutation p.E708K 0.41 deleterious(0.01) probably_damaging(0.998) TCGA-BR-A4QL-01 9 112900545 112900545 C T PALM2-AKAP2 Silent p.P907P 0.42 TCGA-BR-A4QL-01 9 113341715 113341715 C T SVEP1 Missense_Mutation p.E37K 0.23 benign(0.083) TCGA-BR-A4QL-01 9 114490105 114490105 C T C9orf84 Missense_Mutation p.D484N 0.37 tolerated(0.13) benign(0.012) TCGA-BR-A4QL-01 9 114695180 114695180 T - UGCG Frame_Shift_Del p.L365Cfs*9 0.29 TCGA-BR-A4QL-01 9 114886564 114886564 A G SUSD1 Missense_Mutation p.W287R 0.35 deleterious(0) probably_damaging(0.984) TCGA-BR-A4QL-01 9 116136613 116136613 G A HDHD3 Nonsense_Mutation p.R8* 0.50 TCGA-BR-A4QL-01 9 116152751 116152751 C T ALAD Silent p.S168S 0.30 TCGA-BR-A4QL-01 9 116770651 116770651 A G ZNF618 Missense_Mutation p.N191S 0.44 tolerated_low_confidence(0.51) benign(0.002) TCGA-BR-A4QL-01 9 116811914 116811914 G A ZNF618 Missense_Mutation p.A685T 0.38 tolerated(0.17) probably_damaging(0.999) TCGA-BR-A4QL-01 9 116930508 116930508 G A COL27A1 Missense_Mutation p.A225T 0.30 unknown(0) TCGA-BR-A4QL-01 9 117068923 117068923 C T COL27A1 Missense_Mutation p.R1688W 0.45 unknown(0) TCGA-BR-A4QL-01 9 123199642 123199642 C T CDK5RAP2 Missense_Mutation p.E1296K 0.32 deleterious(0.02) possibly_damaging(0.651) TCGA-BR-A4QL-01 9 123914650 123914650 T - CNTRL Intron 0.40 TCGA-BR-A4QL-01 9 123924525 123924525 A - CNTRL Frame_Shift_Del p.K1802Sfs*9 0.17 TCGA-BR-A4QL-01 9 123954450 123954450 T - RAB14 Frame_Shift_Del p.K35Nfs*18 0.42 TCGA-BR-A4QL-01 9 124461682 124461682 C T DAB2IP Missense_Mutation p.R75C 0.35 deleterious(0) probably_damaging(0.989) TCGA-BR-A4QL-01 9 125289508 125289508 T G OR1N1 Missense_Mutation p.Q22P 0.30 deleterious(0.01) benign(0.446) TCGA-BR-A4QL-01 9 125861042 125861042 A - RABGAP1 Frame_Shift_Del p.N930Tfs*15 0.33 TCGA-BR-A4QL-01 9 128206809 128206809 C T MAPKAP1 Missense_Mutation p.A472T 0.35 tolerated(0.57) possibly_damaging(0.595) TCGA-BR-A4QL-01 9 129642094 129642094 A C ZBTB34 Missense_Mutation p.D135A 0.32 tolerated(0.13) benign(0.146) TCGA-BR-A4QL-01 9 129931041 129931041 G A RALGPS1 Missense_Mutation p.D278N 0.37 deleterious(0.04) possibly_damaging(0.54) TCGA-BR-A4QL-01 9 130271374 130271374 G - FAM129B Frame_Shift_Del p.L400* 0.29 TCGA-BR-A4QL-01 9 130551706 130551706 A G CDK9 Missense_Mutation p.M335V 0.33 tolerated(0.08) benign(0.062) TCGA-BR-A4QL-01 9 130710647 130710647 G A FAM102A Missense_Mutation p.T154M 0.46 tolerated(0.07) benign(0.352) TCGA-BR-A4QL-01 9 131482673 131482675 ACC - PKN3 In_Frame_Del p.T821del 0.31 TCGA-BR-A4QL-01 9 131731771 131731771 C T NUP188 Missense_Mutation p.A297V 0.27 tolerated(0.29) benign(0.435) TCGA-BR-A4QL-01 9 131771452 131771452 C T SH3GLB2 Missense_Mutation p.R338H 0.54 deleterious(0.03) probably_damaging(0.97) TCGA-BR-A4QL-01 9 132396542 132396542 G A NTMT1 Silent p.P124P 0.39 TCGA-BR-A4QL-01 9 132571734 132571734 C T TOR1B Missense_Mutation p.R295C 0.41 deleterious(0) possibly_damaging(0.836) TCGA-BR-A4QL-01 9 133914603 133914603 C T LAMC3 Silent p.P417P 0.38 TCGA-BR-A4QL-01 9 134379721 134379721 C T POMT1 Missense_Mutation p.A39V 0.39 tolerated(0.1) probably_damaging(0.983) TCGA-BR-A4QL-01 9 135553865 135553865 G A GTF3C4 Missense_Mutation p.V287M 0.42 deleterious(0.01) possibly_damaging(0.483) TCGA-BR-A4QL-01 9 135786076 135786076 C T TSC1 Missense_Mutation p.G382D 0.30 tolerated(0.22) benign(0.12) TCGA-BR-A4QL-01 9 135786444 135786446 AGG - TSC1 In_Frame_Del p.P362del 0.38 TCGA-BR-A4QL-01 9 136199105 136199105 G A SURF6 Missense_Mutation p.T229M 0.13 deleterious(0) possibly_damaging(0.832) TCGA-BR-A4QL-01 9 136226922 136226922 G A SURF2 Missense_Mutation p.R145H 0.12 benign(0.011) TCGA-BR-A4QL-01 9 136266947 136266947 C A C9orf96 Missense_Mutation p.P427T 0.25 deleterious(0) possibly_damaging(0.656) TCGA-BR-A4QL-01 9 136536724 136536724 G A SARDH Silent p.A753A 0.21 TCGA-BR-A4QL-01 9 137005059 137005059 G A WDR5 Silent p.S20S 0.41 TCGA-BR-A4QL-01 9 137019597 137019598 - C WDR5 Frame_Shift_Ins p.V217Rfs*42 0.29 TCGA-BR-A4QL-01 9 137710579 137710579 G A COL5A1 Silent p.P1436P 0.36 TCGA-BR-A4QL-01 9 137998693 137998693 G A OLFM1 Missense_Mutation p.D241N 0.27 tolerated(0.34) benign(0.043) TCGA-BR-A4QL-01 9 138395646 138395646 G A MRPS2 Silent p.T186T 0.33 TCGA-BR-A4QL-01 9 138415728 138415728 G - LCN1 Frame_Shift_Del p.G100Afs*12 0.30 TCGA-BR-A4QL-01 9 138703221 138703222 TG - CAMSAP1 Frame_Shift_Del p.T1581Nfs*21 0.26 TCGA-BR-A4QL-01 9 139264798 139264798 G A CARD9 Missense_Mutation p.T300I 0.20 tolerated(0.07) benign(0.053) TCGA-BR-A4QL-01 9 139370620 139370620 G A SEC16A Missense_Mutation p.P483L 0.48 tolerated(0.21) benign(0.003) TCGA-BR-A4QL-01 9 139733726 139733726 G A RABL6 Missense_Mutation p.A517T 0.57 tolerated_low_confidence(0.8) unknown(0) TCGA-BR-A4QL-01 9 139905490 139905490 C T ABCA2 Silent p.A1997A 0.30 TCGA-BR-A4QL-01 9 139907184 139907184 G A ABCA2 Silent p.S1687S 0.42 TCGA-BR-A4QL-01 9 139918658 139918658 G - ABCA2 Frame_Shift_Del p.L33Wfs*19 0.14 TCGA-BR-A4QL-01 9 139925737 139925737 G A FUT7 Missense_Mutation p.P152S 0.31 deleterious(0) probably_damaging(0.945) TCGA-BR-A4QL-01 9 139929339 139929339 G T C9orf139 Missense_Mutation p.G136W 0.40 deleterious_low_confidence(0.05) probably_damaging(0.984) TCGA-BR-A4QL-01 9 139929343 139929343 C G C9orf139 Missense_Mutation p.A137G 0.38 tolerated_low_confidence(0.39) possibly_damaging(0.567) TCGA-BR-A4QL-01 9 140327956 140327956 G A NOXA1 Missense_Mutation p.A321T 0.43 tolerated(0.56) benign(0.009) TCGA-BR-A4QL-01 9 140732961 140732961 C - EHMT1 3'Flank 0.34 TCGA-BR-A4QL-01 9 140777198 140777198 C T CACNA1B Silent p.D131D 0.31 TCGA-BR-A4QL-01 9 18777506 18777506 C T ADAMTSL1 Silent p.R1093R 0.50 TCGA-BR-A4QL-01 9 19070224 19070224 C T HAUS6 Missense_Mutation p.A457T 0.42 tolerated(0.35) benign(0.015) TCGA-BR-A4QL-01 9 19450475 19450475 C T ACER2 Silent p.Y223Y 0.41 TCGA-BR-A4QL-01 9 2123753 2123753 G A SMARCA2 Missense_Mutation p.R1266Q 0.41 benign(0.238) TCGA-BR-A4QL-01 9 21802809 21802809 T C MTAP Intron 0.25 TCGA-BR-A4QL-01 9 23692861 23692861 G A ELAVL2 Silent p.D258D 0.33 TCGA-BR-A4QL-01 9 26884837 26884837 A G CAAP1 Silent p.G212G 0.34 TCGA-BR-A4QL-01 9 32487537 32487537 G A DDX58 Missense_Mutation p.A436V 0.33 tolerated(0.85) benign(0.003) TCGA-BR-A4QL-01 9 32541935 32541935 C T TOPORS Missense_Mutation p.R863Q 0.35 deleterious(0) unknown(0) TCGA-BR-A4QL-01 9 33675379 33675379 C A PTENP1 RNA 0.34 TCGA-BR-A4QL-01 9 33675400 33675400 G A PTENP1 RNA 0.21 TCGA-BR-A4QL-01 9 34257623 34257623 T - KIF24 Frame_Shift_Del p.K661Sfs*34 0.60 TCGA-BR-A4QL-01 9 34401682 34401684 GGA - FAM219A In_Frame_Del p.S127del 0.31 TCGA-BR-A4QL-01 9 34623962 34623962 G A ARID3C Silent p.G158G 0.44 TCGA-BR-A4QL-01 9 34625737 34625738 - C ARID3C Splice_Site p.X131_splice 0.33 TCGA-BR-A4QL-01 9 35107840 35107840 G - FAM214B Frame_Shift_Del p.C145Afs*52 0.31 TCGA-BR-A4QL-01 9 35810882 35810882 C T SPAG8 Missense_Mutation p.R346Q 0.37 tolerated(0.09) possibly_damaging(0.625) TCGA-BR-A4QL-01 9 35811334 35811334 A G SPAG8 Missense_Mutation p.W237R 0.34 deleterious(0.03) probably_damaging(0.953) TCGA-BR-A4QL-01 9 37740863 37740863 C T FRMPD1 Missense_Mutation p.P780S 0.35 tolerated(0.2) benign(0.13) TCGA-BR-A4QL-01 9 38411500 38411500 G A IGFBPL1 Missense_Mutation p.A245V 0.34 deleterious(0.04) benign(0.385) TCGA-BR-A4QL-01 9 43626885 43626885 T - SPATA31A6 Frame_Shift_Del p.K601Sfs*19 0.20 TCGA-BR-A4QL-01 9 43737470 43737470 A G CNTNAP3B Missense_Mutation p.S114G 0.37 deleterious(0) possibly_damaging(0.764) TCGA-BR-A4QL-01 9 5361173 5361173 T - PLGRKT Frame_Shift_Del p.K76Rfs*12 0.37 TCGA-BR-A4QL-01 9 65506469 65506469 C T SPATA31A7 Missense_Mutation p.R364Q 0.77 tolerated(0.1) benign(0) TCGA-BR-A4QL-01 9 70177122 70177122 C T FOXD4L5 Missense_Mutation p.A288T 0.19 tolerated(0.22) benign(0.238) TCGA-BR-A4QL-01 9 70490121 70490121 G A CBWD5 5'Flank 0.39 TCGA-BR-A4QL-01 9 70993145 70993145 A G PGM5 Missense_Mutation p.I98V 0.13 deleterious(0.01) possibly_damaging(0.573) TCGA-BR-A4QL-01 9 71628114 71628114 C T PRKACG Missense_Mutation p.A299T 0.39 tolerated(0.18) benign(0.007) TCGA-BR-A4QL-01 9 73205921 73205921 T C TRPM3 Intron 0.29 TCGA-BR-A4QL-01 9 74975132 74975132 C T ZFAND5 Missense_Mutation p.A53T 0.33 tolerated(0.57) benign(0.01) TCGA-BR-A4QL-01 9 77377518 77377518 A - TRPM6 Frame_Shift_Del p.S1357Qfs*31 0.28 TCGA-BR-A4QL-01 9 79328535 79328535 G C PRUNE2 Missense_Mutation p.Q287E 0.33 tolerated(0.4) benign(0.057) TCGA-BR-A4QL-01 9 79985472 79985472 G A VPS13A Missense_Mutation p.R2962H 0.42 deleterious(0) probably_damaging(1) TCGA-BR-A4QL-01 9 82323523 82323523 C T TLE4 Missense_Mutation p.T362I 0.34 tolerated(0.08) benign(0.127) TCGA-BR-A4QL-01 9 847112 847112 G A DMRT1 Silent p.P169P 0.43 TCGA-BR-A4QL-01 9 86258698 86258698 A G IDNK 3'UTR 0.48 TCGA-BR-A4QL-01 9 86585140 86585140 C A HNRNPK Missense_Mutation p.R433L 0.39 deleterious(0) benign(0.32) TCGA-BR-A4QL-01 9 87342787 87342787 G T NTRK2 Missense_Mutation p.D358Y 0.37 deleterious(0.03) benign(0.271) TCGA-BR-A4QL-01 9 90321802 90321802 G - DAPK1 Frame_Shift_Del p.Y1275Tfs*31 0.35 TCGA-BR-A4QL-01 9 91652963 91652963 G A SHC3 Missense_Mutation p.T534M 0.35 deleterious(0) probably_damaging(1) TCGA-BR-A4QL-01 9 92011709 92011709 G A SEMA4D Silent p.S119S 0.31 TCGA-BR-A4QL-01 9 93640023 93640023 C T SYK Missense_Mutation p.A451V 0.26 deleterious(0.01) probably_damaging(1) TCGA-BR-A4QL-01 9 95077846 95077846 A G NOL8 Missense_Mutation p.L354S 0.39 tolerated(0.9) benign(0.04) TCGA-BR-A4QL-01 9 95738954 95738954 C - FGD3 Frame_Shift_Del p.Q141Rfs*33 0.31 TCGA-BR-A4QL-01 9 96055347 96055347 C T WNK2 Missense_Mutation p.T1904M 0.49 unknown(0) TCGA-BR-A4QL-01 9 96278450 96278450 G A FAM120A Silent p.P439P 0.44 TCGA-BR-A4QL-01 9 97063255 97063255 C T ZNF169 Missense_Mutation p.T472I 0.25 tolerated(0.22) benign(0.394) TCGA-BR-A4QL-01 X 100492712 100492712 T A DRP2 Missense_Mutation p.L129Q 0.06 tolerated(0.63) probably_damaging(0.991) TCGA-BR-A4QL-01 X 100911088 100911088 A G ARMCX2 Missense_Mutation p.M496T 0.44 deleterious(0) probably_damaging(0.998) TCGA-BR-A4QL-01 X 100911473 100911473 C T ARMCX2 Missense_Mutation p.V368I 0.37 tolerated(0.48) benign(0.005) TCGA-BR-A4QL-01 X 10094192 10094192 C T WWC3 Missense_Mutation p.T651M 0.36 tolerated(0.05) probably_damaging(0.961) TCGA-BR-A4QL-01 X 101138381 101138381 T A ZMAT1 3'UTR 0.44 TCGA-BR-A4QL-01 X 101395784 101395784 C GT TCEAL6 Frame_Shift_Ins p.A174Tfs*28 0.29 TCGA-BR-A4QL-01 X 102864512 102864512 G A TCEAL3 Missense_Mutation p.A174T 0.17 tolerated(0.41) benign(0.003) TCGA-BR-A4QL-01 X 105970199 105970199 G T RNF128 Missense_Mutation p.R19I 0.44 tolerated(0.09) benign(0.01) TCGA-BR-A4QL-01 X 106845186 106845186 G - FRMPD3 Frame_Shift_Del p.G1341Afs*34 0.41 TCGA-BR-A4QL-01 X 106957756 106957756 G A TSC22D3 Missense_Mutation p.A199V 0.27 deleterious_low_confidence(0) benign(0.038) TCGA-BR-A4QL-01 X 107224317 107224317 C - TEX13B Frame_Shift_Del p.G311Afs*74 0.32 TCGA-BR-A4QL-01 X 110653323 110653323 G A DCX Missense_Mutation p.R183C 0.41 deleterious(0) probably_damaging(1) TCGA-BR-A4QL-01 X 110970903 110970904 - C ALG13 Frame_Shift_Ins p.G720Rfs*17 0.35 TCGA-BR-A4QL-01 X 111195335 111195335 C T TRPC5 Missense_Mutation p.R105H 0.38 tolerated(0.06) probably_damaging(0.996) TCGA-BR-A4QL-01 X 115572199 115572199 T G SLC6A14 Missense_Mutation p.C94G 0.38 deleterious(0) possibly_damaging(0.643) TCGA-BR-A4QL-01 X 115582694 115582694 A - SLC6A14 Frame_Shift_Del p.N341Tfs*12 0.31 TCGA-BR-A4QL-01 X 117043339 117043339 G A KLHL13 Missense_Mutation p.R434C 0.07 deleterious(0) probably_damaging(1) TCGA-BR-A4QL-01 X 118370513 118370513 C - PGRMC1 Frame_Shift_Del p.P64Lfs*37 0.34 TCGA-BR-A4QL-01 X 119005267 119005267 G T RNF113A Missense_Mutation p.R104S 0.35 deleterious(0.03) benign(0.166) TCGA-BR-A4QL-01 X 119037280 119037280 T G AKAP14 Missense_Mutation p.Y32D 0.40 tolerated(0.64) benign(0.001) TCGA-BR-A4QL-01 X 119293304 119293304 C T RHOXF2 Missense_Mutation p.R155C 0.48 tolerated(0.07) benign(0.008) TCGA-BR-A4QL-01 X 119410901 119410901 G A TMEM255A Missense_Mutation p.R196W 0.24 deleterious(0.04) probably_damaging(0.927) TCGA-BR-A4QL-01 X 119680444 119680445 - A CUL4B Frame_Shift_Ins p.L286Ffs*5 0.28 TCGA-BR-A4QL-01 X 119691798 119691798 T A CUL4B Missense_Mutation p.N236I 0.39 deleterious(0) possibly_damaging(0.897) TCGA-BR-A4QL-01 X 119691804 119691804 T C CUL4B Missense_Mutation p.K234R 0.37 tolerated(0.46) benign(0.006) TCGA-BR-A4QL-01 X 120182193 120182193 G A GLUD2 Missense_Mutation p.V219I 0.42 tolerated(1) benign(0.004) TCGA-BR-A4QL-01 X 123176474 123176475 - G STAG2 Frame_Shift_Ins p.M148Dfs*3 0.28 TCGA-BR-A4QL-01 X 123539072 123539072 G A TENM1 Missense_Mutation p.R1734C 0.38 tolerated(0.05) benign(0.205) TCGA-BR-A4QL-01 X 128703273 128703273 G A OCRL Missense_Mutation p.R500Q 0.37 deleterious(0) probably_damaging(1) TCGA-BR-A4QL-01 X 128723844 128723844 G A OCRL Missense_Mutation p.C831Y 0.42 tolerated(0.14) benign(0.063) TCGA-BR-A4QL-01 X 129055422 129055422 G C UTP14A Missense_Mutation p.G403R 0.38 tolerated(0.18) benign(0.039) TCGA-BR-A4QL-01 X 129190011 129190011 C - BCORL1 Frame_Shift_Del p.P1681Qfs*20 0.42 TCGA-BR-A4QL-01 X 129306239 129306239 C A RAB33A Missense_Mutation p.T68N 0.33 deleterious(0) possibly_damaging(0.871) TCGA-BR-A4QL-01 X 129518465 129518465 C A GPR119 Missense_Mutation p.R319S 0.39 tolerated(0.73) benign(0.01) TCGA-BR-A4QL-01 X 129629153 129629153 G A RP1-274L7.1 RNA 0.35 TCGA-BR-A4QL-01 X 12994449 12994449 G A TMSB4X Silent p.T23T 0.42 TCGA-BR-A4QL-01 X 130678359 130678359 C T OR13H1 Silent p.S104S 0.07 TCGA-BR-A4QL-01 X 131351264 131351264 A T RAP2C Missense_Mutation p.S11R 0.38 deleterious(0.01) probably_damaging(1) TCGA-BR-A4QL-01 X 132439845 132439845 G A GPC4 Silent p.P370P 0.33 TCGA-BR-A4QL-01 X 133680429 133680429 C T MIR503HG Intron 0.54 TCGA-BR-A4QL-01 X 135428783 135428783 T C GPR112 Missense_Mutation p.I973T 0.39 tolerated(0.13) benign(0.056) TCGA-BR-A4QL-01 X 135630815 135630815 T C VGLL1 Silent p.P94P 0.40 TCGA-BR-A4QL-01 X 138729031 138729031 A T MCF2 Silent p.I19I 0.50 TCGA-BR-A4QL-01 X 147062878 147062878 C T FMR1NB 5'UTR 0.40 TCGA-BR-A4QL-01 X 14861642 14861642 A T FANCB 3'UTR 0.28 TCGA-BR-A4QL-01 X 149671777 149671777 C T MAMLD1 Intron 0.38 TCGA-BR-A4QL-01 X 150154642 150154642 C A HMGB3 Missense_Mutation p.P90H 0.42 deleterious(0.03) probably_damaging(0.944) TCGA-BR-A4QL-01 X 150349152 150349152 G A GPR50 Missense_Mutation p.R366Q 0.50 deleterious(0) possibly_damaging(0.83) TCGA-BR-A4QL-01 X 151996414 151996414 G A CETN2 Missense_Mutation p.R164C 0.30 deleterious(0.03) benign(0.077) TCGA-BR-A4QL-01 X 152613122 152613122 G A ZNF275 Intron 0.39 TCGA-BR-A4QL-01 X 152720451 152720451 C T HAUS7 Intron 0.33 TCGA-BR-A4QL-01 X 152825205 152825205 G A ATP2B3 Missense_Mutation p.V882M 0.34 deleterious(0.02) possibly_damaging(0.647) TCGA-BR-A4QL-01 X 153053016 153053018 TGA - IDH3G In_Frame_Del p.I192del 0.48 TCGA-BR-A4QL-01 X 153131206 153131206 G A L1CAM Missense_Mutation p.R834W 0.38 deleterious(0.03) benign(0.001) TCGA-BR-A4QL-01 X 153219633 153219633 G A HCFC1 Missense_Mutation p.A1406V 0.38 tolerated_low_confidence(0.29) benign(0.001) TCGA-BR-A4QL-01 X 153227748 153227748 G A HCFC1 Missense_Mutation p.T241M 0.39 deleterious(0.01) possibly_damaging(0.85) TCGA-BR-A4QL-01 X 153296753 153296753 G A MECP2 Missense_Mutation p.P188S 0.48 tolerated(0.15) benign(0.033) TCGA-BR-A4QL-01 X 15333633 15333633 A - ASB11 Frame_Shift_Del p.L32Wfs*4 0.34 TCGA-BR-A4QL-01 X 153420113 153420113 G A OPN1LW Missense_Mutation p.G215R 0.27 tolerated(0.21) probably_damaging(1) TCGA-BR-A4QL-01 X 153421957 153421957 C A OPN1LW Silent p.A311A 0.26 TCGA-BR-A4QL-01 X 153593797 153593797 C T FLNA Missense_Mutation p.R496Q 0.32 deleterious(0.04) probably_damaging(0.992) TCGA-BR-A4QL-01 X 153689624 153689624 C T PLXNA3 Silent p.S260S 0.33 TCGA-BR-A4QL-01 X 153706246 153706246 G A LAGE3 3'UTR 0.53 TCGA-BR-A4QL-01 X 153715994 153715994 G T SLC10A3 Missense_Mutation p.A429D 0.39 deleterious(0) probably_damaging(0.999) TCGA-BR-A4QL-01 X 154001491 154001491 C T DKC1 Silent p.D374D 0.31 TCGA-BR-A4QL-01 X 154754197 154754197 C T TMLHE Missense_Mutation p.R93H 0.39 deleterious(0) probably_damaging(0.998) TCGA-BR-A4QL-01 X 155004342 155004342 G A SPRY3 Missense_Mutation p.C270Y 0.47 tolerated(0.39) probably_damaging(0.989) TCGA-BR-A4QL-01 X 15619088 15619090 CCT - ACE2 5'UTR 0.36 TCGA-BR-A4QL-01 X 16142062 16142062 A - GRPR 5'UTR 0.33 TCGA-BR-A4QL-01 X 16850848 16850849 - AG TXLNG Frame_Shift_Ins p.F328Sfs*4 0.35 TCGA-BR-A4QL-01 X 16859880 16859880 G A TXLNG Silent p.S526S 0.43 TCGA-BR-A4QL-01 X 16870926 16870926 G A RBBP7 Silent p.C321C 0.40 TCGA-BR-A4QL-01 X 22291518 22291518 G A ZNF645 Missense_Mutation p.R137H 0.39 tolerated(0.08) benign(0.004) TCGA-BR-A4QL-01 X 24750565 24750565 T C POLA1 Missense_Mutation p.F583L 0.39 deleterious(0.02) possibly_damaging(0.733) TCGA-BR-A4QL-01 X 29973787 29973787 T C IL1RAPL1 Silent p.H647H 0.38 TCGA-BR-A4QL-01 X 3002316 3002316 C T ARSF Nonsense_Mutation p.R147* 0.34 TCGA-BR-A4QL-01 X 306252 306252 G A PPP2R3B Silent p.H345H 0.47 TCGA-BR-A4QL-01 X 30870981 30870981 G A TAB3 Missense_Mutation p.R542W 0.32 deleterious(0) possibly_damaging(0.513) TCGA-BR-A4QL-01 X 31090125 31090125 G A FTHL17 5'UTR 0.50 TCGA-BR-A4QL-01 X 3235295 3235295 C T MXRA5 Missense_Mutation p.A2143T 0.34 tolerated(0.08) benign(0.218) TCGA-BR-A4QL-01 X 3240108 3240108 C T MXRA5 Silent p.V1206V 0.32 TCGA-BR-A4QL-01 X 32490278 32490278 G T DMD Intron 0.42 TCGA-BR-A4QL-01 X 35989784 35989784 G A CXorf22 Silent p.A684A 0.43 TCGA-BR-A4QL-01 X 37027114 37027114 C T FAM47C Missense_Mutation p.R211C 0.38 tolerated(0.3) benign(0.008) TCGA-BR-A4QL-01 X 37027775 37027775 C T FAM47C Missense_Mutation p.P431L 0.30 tolerated_low_confidence(0.09) probably_damaging(0.999) TCGA-BR-A4QL-01 X 40506456 40506456 G A CXorf38 Intron 0.52 TCGA-BR-A4QL-01 X 41025387 41025387 C T USP9X Nonsense_Mutation p.R750* 0.28 TCGA-BR-A4QL-01 X 41075795 41075795 G A USP9X Missense_Mutation p.R1992Q 0.41 tolerated(0.14) benign(0.269) TCGA-BR-A4QL-01 X 47003890 47003890 G A NDUFB11 Silent p.D63D 0.44 TCGA-BR-A4QL-01 X 48629416 48629416 A G GLOD5 Missense_Mutation p.K92R 0.38 deleterious(0.03) possibly_damaging(0.805) TCGA-BR-A4QL-01 X 48649621 48649621 C A GATA1 Silent p.P35P 0.36 TCGA-BR-A4QL-01 X 48678589 48678589 C T HDAC6 Missense_Mutation p.S755L 0.48 deleterious(0) possibly_damaging(0.791) TCGA-BR-A4QL-01 X 48755072 48755072 G A TIMM17B 5'UTR 0.17 TCGA-BR-A4QL-01 X 48891050 48891050 G A TFE3 Missense_Mutation p.R356C 0.57 deleterious(0) benign(0.181) TCGA-BR-A4QL-01 X 48925127 48925127 G A CCDC120 Missense_Mutation p.G458S 0.46 tolerated(0.07) benign(0.007) TCGA-BR-A4QL-01 X 48972303 48972304 - C GPKOW Frame_Shift_Ins p.D361Gfs*24 0.33 TCGA-BR-A4QL-01 X 48973476 48973476 C T GPKOW Missense_Mutation p.R274H 0.40 deleterious(0.02) probably_damaging(0.993) TCGA-BR-A4QL-01 X 49021225 49021225 G A MAGIX Missense_Mutation p.A102T 0.37 tolerated(0.6) benign(0.004) TCGA-BR-A4QL-01 X 49078999 49078999 G A CACNA1F Missense_Mutation p.T768I 0.20 deleterious(0.03) benign(0.162) TCGA-BR-A4QL-01 X 49079419 49079419 G A CACNA1F Missense_Mutation p.T696M 0.25 deleterious(0) probably_damaging(0.983) TCGA-BR-A4QL-01 X 49955569 49955569 G - AKAP4 3'UTR 0.25 TCGA-BR-A4QL-01 X 50052149 50052149 T C CCNB3 Missense_Mutation p.F327S 0.41 tolerated(0.39) benign(0.102) TCGA-BR-A4QL-01 X 50090755 50090755 T C CCNB3 Missense_Mutation p.M1314T 0.31 deleterious(0.01) possibly_damaging(0.765) TCGA-BR-A4QL-01 X 53279669 53279669 C T IQSEC2 Missense_Mutation p.E697K 0.38 deleterious(0) possibly_damaging(0.8) TCGA-BR-A4QL-01 X 53657955 53657955 T C HUWE1 Missense_Mutation p.H265R 0.36 possibly_damaging(0.863) TCGA-BR-A4QL-01 X 54117833 54117833 C T FAM120C Missense_Mutation p.R780Q 0.25 tolerated(0.06) benign(0.049) TCGA-BR-A4QL-01 X 54472561 54472562 - G FGD1 Frame_Shift_Ins p.Q956Pfs*21 0.27 TCGA-BR-A4QL-01 X 54949891 54949891 G A TRO Missense_Mutation p.G309D 0.46 tolerated(0.13) unknown(0) TCGA-BR-A4QL-01 X 55020452 55020452 C A PFKFB1 5'UTR 0.24 TCGA-BR-A4QL-01 X 55478849 55478849 A G MAGEH1 Silent p.R14R 0.35 TCGA-BR-A4QL-01 X 5821129 5821129 G A NLGN4X Silent p.F530F 0.44 TCGA-BR-A4QL-01 X 601806 601806 G A SHOX Missense_Mutation p.R206Q 0.56 tolerated(0.06) probably_damaging(0.996) TCGA-BR-A4QL-01 X 63444306 63444306 C T ASB12 Missense_Mutation p.R289H 0.25 deleterious(0.03) benign(0.061) TCGA-BR-A4QL-01 X 64722913 64722913 A G ZC3H12B Missense_Mutation p.M779V 0.43 tolerated(0.62) benign(0.001) TCGA-BR-A4QL-01 X 64949377 64949377 C T MSN Silent p.S90S 0.36 TCGA-BR-A4QL-01 X 69669611 69669611 C T DLG3 Missense_Mutation p.A202V 0.32 deleterious(0.02) benign(0.026) TCGA-BR-A4QL-01 X 70384062 70384062 G A NLGN3 Missense_Mutation p.R266H 0.08 tolerated(0.2) probably_damaging(1) TCGA-BR-A4QL-01 X 71349631 71349631 G - RGAG4 3'UTR 0.37 TCGA-BR-A4QL-01 X 71349920 71349920 C T RGAG4 Missense_Mutation p.E491K 0.10 deleterious_low_confidence(0) unknown(0) TCGA-BR-A4QL-01 X 7267953 7267953 T C STS Missense_Mutation p.F468S 0.06 deleterious(0.01) possibly_damaging(0.626) TCGA-BR-A4QL-01 X 73963005 73963005 T C KIAA2022 Missense_Mutation p.M463V 0.30 deleterious(0.05) benign(0.107) TCGA-BR-A4QL-01 X 77112909 77112909 C T MAGT1 Missense_Mutation p.R191Q 0.34 tolerated(0.73) benign(0.067) TCGA-BR-A4QL-01 X 77395139 77395140 AG - TAF9B 5'UTR 0.30 TCGA-BR-A4QL-01 X 78216537 78216537 G A P2RY10 Missense_Mutation p.D174N 0.45 tolerated(0.37) benign(0.002) TCGA-BR-A4QL-01 X 84510642 84510642 G A ZNF711 Missense_Mutation p.D153N 0.36 tolerated(0.14) possibly_damaging(0.65) TCGA-BR-A4QL-01 X 85403798 85403798 C T DACH2 Silent p.G58G 0.48 TCGA-BR-A4QL-01 X 96167391 96167391 G A DIAPH2 Missense_Mutation p.D218N 0.24 tolerated(0.24) unknown(0) TCGA-BR-A4QL-01 X 9900722 9900722 G A SHROOM2 Silent p.E1133E 0.42 TCGA-BR-A4QL-01 X 99934400 99934400 C T SYTL4 Missense_Mutation p.G523E 0.21 tolerated(1) benign(0.009) TCGA-BR-A4QM-01 10 121658153 121658153 C T SEC23IP Silent p.S126S 0.27 TCGA-BR-A4QM-01 10 13234491 13234491 G A MCM10 Silent p.S557S 0.31 TCGA-BR-A4QM-01 10 17276765 17276765 A G VIM Missense_Mutation p.Y319C 0.24 deleterious(0.04) probably_damaging(0.983) TCGA-BR-A4QM-01 10 18789768 18789768 C T CACNB2 Nonsense_Mutation p.R162* 0.21 TCGA-BR-A4QM-01 10 76789439 76789439 C T KAT6B Silent p.V1619V 0.28 TCGA-BR-A4QM-01 10 81052021 81052021 G A ZMIZ1 Missense_Mutation p.A289T 0.20 possibly_damaging(0.704) TCGA-BR-A4QM-01 10 99126349 99126349 T C RRP12 Missense_Mutation p.D1082G 0.18 deleterious(0.02) benign(0.016) TCGA-BR-A4QM-01 11 124620670 124620670 C T VSIG2 Missense_Mutation p.V123I 0.17 tolerated(0.06) benign(0.369) TCGA-BR-A4QM-01 11 1263878 1263878 C T MUC5B Missense_Mutation p.T1923M 0.26 unknown(0) TCGA-BR-A4QM-01 11 30032974 30032974 T C KCNA4 Missense_Mutation p.T418A 0.29 tolerated(0.08) probably_damaging(0.922) TCGA-BR-A4QM-01 11 3249928 3249928 G A MRGPRE Silent p.L33L 0.20 TCGA-BR-A4QM-01 11 48510618 48510618 T G OR4A47 Missense_Mutation p.F92V 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.721) TCGA-BR-A4QM-01 11 5528945 5528945 T G UBQLN3 Missense_Mutation p.H615P 0.28 deleterious(0.02) benign(0.148) TCGA-BR-A4QM-01 12 102147160 102147160 G T GNPTAB Missense_Mutation p.L1198M 0.12 deleterious(0) probably_damaging(0.999) TCGA-BR-A4QM-01 12 107712922 107712922 G A BTBD11 Missense_Mutation p.V69I 0.36 tolerated(0.23) unknown(0) TCGA-BR-A4QM-01 12 108589694 108589694 G A WSCD2 Missense_Mutation p.A29T 0.23 tolerated(0.15) probably_damaging(0.998) TCGA-BR-A4QM-01 12 108912824 108912824 G A FICD Missense_Mutation p.G317R 0.16 deleterious(0) probably_damaging(1) TCGA-BR-A4QM-01 12 118490136 118490136 G T WSB2 Missense_Mutation p.P54H 0.20 deleterious(0) probably_damaging(0.997) TCGA-BR-A4QM-01 12 131438988 131438988 G A GPR133 5'UTR 0.12 TCGA-BR-A4QM-01 12 31820774 31820774 A T METTL20 Silent p.R213R 0.28 TCGA-BR-A4QM-01 12 48371127 48371127 G T COL2A1 Silent p.G1083G 0.19 TCGA-BR-A4QM-01 12 56482341 56482341 G T ERBB3 Missense_Mutation p.D297Y 0.23 deleterious(0) probably_damaging(1) TCGA-BR-A4QM-01 12 91348279 91348279 C T CCER1 Missense_Mutation p.V81M 0.25 tolerated(0.31) probably_damaging(0.938) TCGA-BR-A4QM-01 12 9840550 9840550 C T CLEC2D Silent p.C75C 0.23 TCGA-BR-A4QM-01 13 48986434 48986434 G C LPAR6 Missense_Mutation p.F42L 0.18 deleterious(0.02) probably_damaging(1) TCGA-BR-A4QM-01 13 92345752 92345752 G A GPC5 Missense_Mutation p.G213R 0.19 tolerated(0.52) benign(0.248) TCGA-BR-A4QM-01 14 30135292 30135292 T G PRKD1 Missense_Mutation p.K176Q 0.25 deleterious(0.03) probably_damaging(0.994) TCGA-BR-A4QM-01 15 23006451 23006454 CACT - NIPA2 Frame_Shift_Del p.S284Afs*22 0.24 TCGA-BR-A4QM-01 15 54586259 54586259 T C UNC13C Silent p.L1329L 0.23 TCGA-BR-A4QM-01 16 1817631 1817631 G A MAPK8IP3 Missense_Mutation p.V1101I 0.46 tolerated(0.36) possibly_damaging(0.788) TCGA-BR-A4QM-01 16 49671764 49671764 G A ZNF423 Silent p.H433H 0.19 TCGA-BR-A4QM-01 16 68849586 68849586 G A CDH1 Missense_Mutation p.E497K 0.54 deleterious(0) probably_damaging(0.92) TCGA-BR-A4QM-01 16 70989374 70989374 C G HYDIN Missense_Mutation p.A2074P 0.33 probably_damaging(0.991) TCGA-BR-A4QM-01 17 11666890 11666890 G T DNAH9 Missense_Mutation p.A2377S 0.43 benign(0.244) TCGA-BR-A4QM-01 17 33267619 33267619 C T CCT6B Missense_Mutation p.D303N 0.15 deleterious(0) possibly_damaging(0.593) TCGA-BR-A4QM-01 17 4720037 4720037 C T PLD2 Silent p.F526F 0.26 TCGA-BR-A4QM-01 17 56448391 56448391 G A RNF43 Missense_Mutation p.H86Y 0.39 deleterious(0) probably_damaging(0.998) TCGA-BR-A4QM-01 17 56492797 56492798 - A RNF43 Frame_Shift_Ins p.I48Yfs*27 0.22 TCGA-BR-A4QM-01 17 70732808 70732808 C A SLC39A11 Missense_Mutation p.A225S 0.10 tolerated(0.11) benign(0.361) TCGA-BR-A4QM-01 18 19427012 19427012 T A MIB1 Silent p.G773G 0.16 TCGA-BR-A4QM-01 18 21739566 21739566 C T CABYR Silent p.T224T 0.28 TCGA-BR-A4QM-01 18 50912418 50912418 A C DCC Missense_Mutation p.S789R 0.31 deleterious(0) probably_damaging(0.998) TCGA-BR-A4QM-01 18 7117677 7117677 C T LAMA1 Missense_Mutation p.A15T 0.21 tolerated(0.27) benign(0.086) TCGA-BR-A4QM-01 19 13192536 13192536 C T NFIX Missense_Mutation p.T374M 0.23 deleterious(0.01) possibly_damaging(0.761) TCGA-BR-A4QM-01 19 19756753 19756753 C T ATP13A1 Missense_Mutation p.S1097N 0.23 tolerated(0.49) benign(0.021) TCGA-BR-A4QM-01 19 20844314 20844314 G A ZNF626 5'UTR 0.11 TCGA-BR-A4QM-01 19 22364350 22364350 G A ZNF676 Nonsense_Mutation p.Q57* 0.27 TCGA-BR-A4QM-01 19 37441098 37441098 A C ZNF568 Missense_Mutation p.N348T 0.12 tolerated(0.26) probably_damaging(0.998) TCGA-BR-A4QM-01 19 375955 375955 G A THEG Nonsense_Mutation p.R6* 0.30 TCGA-BR-A4QM-01 19 39281495 39281495 G A LGALS7B Missense_Mutation p.E88K 0.21 tolerated(0.07) benign(0.277) TCGA-BR-A4QM-01 19 42489213 42489213 G T ATP1A3 Missense_Mutation p.L297I 0.22 tolerated(1) benign(0.019) TCGA-BR-A4QM-01 19 46307639 46307639 G A RSPH6A Silent p.D508D 0.29 TCGA-BR-A4QM-01 19 50868895 50868895 G A NAPSA 5'UTR 0.33 TCGA-BR-A4QM-01 19 53686190 53686190 G A ZNF665 5'UTR 0.25 TCGA-BR-A4QM-01 19 54656241 54656241 G A CNOT3 Silent p.P594P 0.22 TCGA-BR-A4QM-01 19 9070919 9070919 A G MUC16 Silent p.S5509S 0.17 TCGA-BR-A4QM-01 1 110086752 110086752 C A GPR61 Missense_Mutation p.L370M 0.20 deleterious(0.02) probably_damaging(0.912) TCGA-BR-A4QM-01 1 1233424 1233424 T C ACAP3 Missense_Mutation p.R329G 0.21 deleterious(0) benign(0.316) TCGA-BR-A4QM-01 1 12854440 12854440 A C PRAMEF1 Silent p.R222R 0.08 TCGA-BR-A4QM-01 1 152284143 152284143 A G FLG Silent p.D1073D 0.24 TCGA-BR-A4QM-01 1 152324606 152324606 T G FLG2 Missense_Mutation p.S1886R 0.22 possibly_damaging(0.81) TCGA-BR-A4QM-01 1 158262412 158262412 C A CD1C Missense_Mutation p.R213S 0.42 tolerated(0.1) benign(0.013) TCGA-BR-A4QM-01 1 200378016 200378016 G A ZNF281 Missense_Mutation p.S273F 0.20 deleterious(0) probably_damaging(0.994) TCGA-BR-A4QM-01 1 210334256 210334256 A G SYT14 Missense_Mutation p.R577G 0.16 deleterious(0.04) possibly_damaging(0.749) TCGA-BR-A4QM-01 1 216850654 216850654 A C ESRRG Missense_Mutation p.L84R 0.09 tolerated_low_confidence(0.05) possibly_damaging(0.744) TCGA-BR-A4QM-01 1 228246882 228246882 C T WNT3A Missense_Mutation p.R259C 0.26 deleterious(0) possibly_damaging(0.893) TCGA-BR-A4QM-01 1 236723047 236723047 C T HEATR1 Silent p.A1579A 0.28 TCGA-BR-A4QM-01 1 24669504 24669504 C T GRHL3 Missense_Mutation p.R470C 0.20 deleterious(0) probably_damaging(0.999) TCGA-BR-A4QM-01 1 247752194 247752194 A G OR2G2 Missense_Mutation p.D178G 0.29 deleterious(0.01) probably_damaging(0.984) TCGA-BR-A4QM-01 1 34042979 34042979 C T CSMD2 Missense_Mutation p.R2500H 0.18 deleterious(0.03) probably_damaging(0.954) TCGA-BR-A4QM-01 1 90058454 90058454 T C LRRC8B Missense_Mutation p.L755P 0.24 deleterious(0) probably_damaging(0.998) TCGA-BR-A4QM-01 1 90180288 90180288 G A LRRC8C Missense_Mutation p.S720N 0.20 tolerated(0.48) benign(0) TCGA-BR-A4QM-01 1 9030997 9030997 G A CA6 Silent p.Q267Q 0.18 TCGA-BR-A4QM-01 20 58440688 58440688 A C SYCP2 Silent p.T1466T 0.23 TCGA-BR-A4QM-01 21 11098713 11098713 G A BAGE2 RNA 0.13 TCGA-BR-A4QM-01 21 15872912 15872912 G A SAMSN1 Nonsense_Mutation p.R304* 0.17 TCGA-BR-A4QM-01 21 32119521 32119521 G T KRTAP21-2 5'UTR 0.22 TCGA-BR-A4QM-01 21 46058077 46058077 A T KRTAP10-10 Missense_Mutation p.K248M 0.16 deleterious(0.01) probably_damaging(0.962) TCGA-BR-A4QM-01 2 179605766 179605766 A T TTN Missense_Mutation p.L4065H 0.20 TCGA-BR-A4QM-01 2 219251895 219251895 G T SLC11A1 Missense_Mutation p.W171C 0.19 deleterious(0) probably_damaging(1) TCGA-BR-A4QM-01 2 27717235 27717235 A C FNDC4 Missense_Mutation p.Y78D 0.33 deleterious(0) benign(0.329) TCGA-BR-A4QM-01 2 85276556 85276556 C T KCMF1 Silent p.S223S 0.26 TCGA-BR-A4QM-01 3 113652378 113652378 G A GRAMD1C Silent p.R410R 0.21 TCGA-BR-A4QM-01 3 113955522 113955522 C T ZNF80 Missense_Mutation p.E134K 0.33 tolerated(0.49) benign(0.247) TCGA-BR-A4QM-01 3 123376108 123376108 G A MYLK Missense_Mutation p.R1385C 0.16 deleterious(0.01) possibly_damaging(0.894) TCGA-BR-A4QM-01 3 142840282 142840282 C T CHST2 Silent p.D208D 0.19 TCGA-BR-A4QM-01 3 37555268 37555268 C T ITGA9 Silent p.F304F 0.42 TCGA-BR-A4QM-01 3 38640419 38640419 G A SCN5A Silent p.S671S 0.18 TCGA-BR-A4QM-01 3 49412905 49412905 C T RHOA Missense_Mutation p.E40K 0.31 deleterious(0) possibly_damaging(0.873) TCGA-BR-A4QM-01 3 54604065 54604065 C T CACNA2D3 Silent p.I274I 0.32 TCGA-BR-A4QM-01 3 78684982 78684982 T C ROBO1 Missense_Mutation p.Q1105R 0.23 tolerated(0.09) benign(0.062) TCGA-BR-A4QM-01 3 89528554 89528554 A G EPHA3 Missense_Mutation p.K952E 0.29 tolerated(0.95) probably_damaging(0.996) TCGA-BR-A4QM-01 4 100544029 100544029 G C MTTP 3'UTR 0.31 TCGA-BR-A4QM-01 4 123336638 123336638 C A ADAD1 Missense_Mutation p.P452T 0.24 deleterious(0.01) probably_damaging(0.943) TCGA-BR-A4QM-01 4 126238415 126238415 G A FAT4 Silent p.A283A 0.35 TCGA-BR-A4QM-01 4 126370752 126370752 T G FAT4 Missense_Mutation p.F2861V 0.08 benign(0.163) TCGA-BR-A4QM-01 4 155157788 155157788 G T DCHS2 Silent p.T2217T 0.19 TCGA-BR-A4QM-01 4 24558017 24558017 T C DHX15 Missense_Mutation p.M240V 0.21 deleterious(0.03) probably_damaging(0.996) TCGA-BR-A4QM-01 4 38777160 38777160 C T TLR10 Missense_Mutation p.E18K 0.14 tolerated(0.86) benign(0.002) TCGA-BR-A4QM-01 4 73156747 73156747 T C ADAMTS3 Missense_Mutation p.K919R 0.16 tolerated(0.45) benign(0.012) TCGA-BR-A4QM-01 4 85661555 85661555 T A WDFY3 Silent p.S2083S 0.17 TCGA-BR-A4QM-01 4 87643423 87643423 C T PTPN13 Missense_Mutation p.R482W 0.20 deleterious(0) probably_damaging(0.999) TCGA-BR-A4QM-01 5 115298413 115298413 C T AQPEP Silent p.L33L 0.21 TCGA-BR-A4QM-01 5 140203412 140203412 C T PCDHA5 Silent p.G684G 0.21 TCGA-BR-A4QM-01 5 140256720 140256720 G A PCDHA12 Missense_Mutation p.V555M 0.31 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BR-A4QM-01 5 140558894 140558894 T C PCDHB8 Silent p.L427L 0.10 TCGA-BR-A4QM-01 5 140580096 140580096 A G PCDHB11 Missense_Mutation p.K250R 0.17 tolerated_low_confidence(0.06) benign(0.008) TCGA-BR-A4QM-01 5 140789552 140789552 G A PCDHGB6 Missense_Mutation p.D595N 0.17 deleterious(0) probably_damaging(1) TCGA-BR-A4QM-01 5 14681649 14681649 C T FAM105B Missense_Mutation p.T134M 0.39 deleterious(0) probably_damaging(1) TCGA-BR-A4QM-01 5 156679702 156679702 C - ITK 3'UTR 0.15 TCGA-BR-A4QM-01 5 158630531 158630531 C G RNF145 Missense_Mutation p.S62T 0.42 tolerated(0.21) benign(0.396) TCGA-BR-A4QM-01 5 176797932 176797932 T A RGS14 Missense_Mutation p.V385E 0.20 deleterious(0.03) benign(0.297) TCGA-BR-A4QM-01 5 180166621 180166621 G A OR2Y1 Silent p.I146I 0.32 TCGA-BR-A4QM-01 5 88018596 88018596 G A MEF2C Missense_Mutation p.A426V 0.28 tolerated(0.43) possibly_damaging(0.706) TCGA-BR-A4QM-01 6 102074313 102074313 A G GRIK2 Silent p.S114S 0.05 TCGA-BR-A4QM-01 6 42625808 42625808 G A UBR2 Silent p.L973L 0.55 TCGA-BR-A4QM-01 6 83767606 83767606 T C UBE3D Silent p.L71L 0.14 TCGA-BR-A4QM-01 7 126883319 126883319 G T GRM8 5'UTR 0.33 TCGA-BR-A4QM-01 7 137237196 137237196 G T DGKI Missense_Mutation p.A689D 0.20 deleterious(0.02) benign(0.295) TCGA-BR-A4QM-01 7 95034618 95034618 G A PON2 3'UTR 0.39 TCGA-BR-A4QM-01 8 104898169 104898169 T C RIMS2 Silent p.L448L 0.11 TCGA-BR-A4QM-01 8 88365898 88365898 T A CNBD1 Missense_Mutation p.L396H 0.18 deleterious(0) probably_damaging(0.999) TCGA-BR-A4QM-01 8 88885868 88885868 T C DCAF4L2 Missense_Mutation p.E111G 0.14 tolerated(0.05) benign(0.001) TCGA-BR-A4QM-01 9 12821406 12821406 G A LURAP1L Missense_Mutation p.V112I 0.28 tolerated(0.05) benign(0.095) TCGA-BR-A4QM-01 X 153037379 153037379 C T PLXNB3 Silent p.L883L 0.58 TCGA-BR-A4QM-01 X 48457987 48457987 C T WDR13 Silent p.S135S 0.21 TCGA-CD-5798-01 10 113917036 113917036 C T GPAM Missense_Mutation p.G698R 0.09 deleterious(0.01) possibly_damaging(0.867) TCGA-CD-5798-01 10 134622029 134622029 C T TTC40 Missense_Mutation p.V2682I 0.09 deleterious_low_confidence(0) benign(0.208) TCGA-CD-5798-01 10 38345151 38345151 A C ZNF33A Missense_Mutation p.K700T 0.08 deleterious(0.02) probably_damaging(0.997) TCGA-CD-5798-01 11 108192027 108192027 G A ATM Splice_Site p.X2151_splice 0.11 TCGA-CD-5798-01 11 118765330 118765333 TCTC - CXCR5 Frame_Shift_Del p.E362Qfs*39 0.13 TCGA-CD-5798-01 11 4112528 4112528 G A STIM1 Missense_Mutation p.D520N 0.10 deleterious(0.01) benign(0.199) TCGA-CD-5798-01 11 46799045 46799045 T G CKAP5 Missense_Mutation p.K936Q 0.06 deleterious(0.01) benign(0.305) TCGA-CD-5798-01 11 46918479 46918479 C T LRP4 Missense_Mutation p.R288H 0.11 tolerated(0.15) benign(0.38) TCGA-CD-5798-01 11 56000616 56000616 G T OR5T2 Missense_Mutation p.H16N 0.13 tolerated_low_confidence(0.34) benign(0.007) TCGA-CD-5798-01 11 65651964 65651964 C T FIBP Intron 0.06 TCGA-CD-5798-01 12 109613985 109613985 A T ACACB Missense_Mutation p.M452L 0.10 deleterious(0) possibly_damaging(0.612) TCGA-CD-5798-01 12 10962536 10962536 T C TAS2R9 Missense_Mutation p.I47V 0.15 deleterious(0) probably_damaging(0.972) TCGA-CD-5798-01 12 109889615 109889615 C T KCTD10 Missense_Mutation p.E243K 0.17 deleterious(0) possibly_damaging(0.643) TCGA-CD-5798-01 12 129694077 129694077 T C TMEM132D Silent p.E477E 0.07 TCGA-CD-5798-01 12 130184802 130184802 C T TMEM132D Missense_Mutation p.R174Q 0.16 tolerated(0.28) benign(0.105) TCGA-CD-5798-01 12 15784459 15784459 A T EPS8 Missense_Mutation p.I654K 0.12 tolerated(0.2) benign(0.312) TCGA-CD-5798-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.10 deleterious(0) benign(0.361) TCGA-CD-5798-01 12 57626616 57626616 C T SHMT2 Nonsense_Mutation p.R283* 0.10 TCGA-CD-5798-01 12 6439826 6439826 G A TNFRSF1A Missense_Mutation p.S226F 0.06 tolerated(0.34) benign(0.015) TCGA-CD-5798-01 12 94562997 94562997 A T PLXNC1 Silent p.T377T 0.14 TCGA-CD-5798-01 13 23910025 23910025 C T SACS Missense_Mutation p.G2664R 0.10 probably_damaging(1) TCGA-CD-5798-01 13 36700222 36700222 G A DCLK1 Missense_Mutation p.A18V 0.13 tolerated_low_confidence(0.58) unknown(0) TCGA-CD-5798-01 13 74419995 74419995 C T KLF12 Silent p.P213P 0.09 TCGA-CD-5798-01 14 103371927 103371927 C T TRAF3 Nonsense_Mutation p.R505* 0.08 TCGA-CD-5798-01 14 106622092 106622092 A G IGHV3-16 Silent p.S51S 0.10 TCGA-CD-5798-01 14 19553604 19553604 A G POTEG Missense_Mutation p.K63R 0.04 deleterious_low_confidence(0.01) probably_damaging(0.991) TCGA-CD-5798-01 14 42356791 42356791 T G LRFN5 Missense_Mutation p.I321M 0.11 deleterious(0.01) probably_damaging(0.962) TCGA-CD-5798-01 14 67815774 67815774 G A ATP6V1D Missense_Mutation p.A96V 0.12 tolerated(0.13) benign(0.164) TCGA-CD-5798-01 14 79746838 79746838 T C NRXN3 Intron 0.08 TCGA-CD-5798-01 14 86088964 86088964 T G FLRT2 Missense_Mutation p.L369R 0.10 tolerated(0.44) benign(0.002) TCGA-CD-5798-01 15 77059273 77059273 C A SCAPER Missense_Mutation p.D469Y 0.06 deleterious(0) probably_damaging(0.982) TCGA-CD-5798-01 16 2028044 2028044 G A TBL3 Missense_Mutation p.V682M 0.06 deleterious(0.01) probably_damaging(0.973) TCGA-CD-5798-01 16 2048404 2048404 G C ZNF598 Missense_Mutation p.N848K 0.09 possibly_damaging(0.474) TCGA-CD-5798-01 16 24816169 24816169 A T TNRC6A Missense_Mutation p.R1327S 0.10 deleterious(0) possibly_damaging(0.628) TCGA-CD-5798-01 16 67919834 67919834 C G NRN1L Intron 0.14 TCGA-CD-5798-01 16 67943097 67943097 C T PSKH1 Missense_Mutation p.R149W 0.08 deleterious(0.04) probably_damaging(0.998) TCGA-CD-5798-01 16 8866677 8866677 C T ABAT Missense_Mutation p.T286M 0.09 deleterious(0.05) benign(0.441) TCGA-CD-5798-01 17 42271971 42271971 C A ATXN7L3 Missense_Mutation p.S277I 0.17 tolerated(0.08) benign(0.047) TCGA-CD-5798-01 18 5398077 5398077 C T EPB41L3 Silent p.A805A 0.10 TCGA-CD-5798-01 18 5424307 5424307 C A EPB41L3 Missense_Mutation p.A373S 0.16 deleterious(0.01) probably_damaging(0.99) TCGA-CD-5798-01 19 19260200 19260202 CTT - MEF2B In_Frame_Del p.K31del 0.12 TCGA-CD-5798-01 19 20228877 20228877 C A ZNF90 Missense_Mutation p.P172T 0.16 tolerated(0.24) benign(0.282) TCGA-CD-5798-01 19 20828171 20828171 T G ZNF626 Intron 0.09 TCGA-CD-5798-01 19 31048083 31048083 C G ZNF536 3'UTR 0.10 TCGA-CD-5798-01 19 37367987 37367987 T A ZNF345 Silent p.T85T 0.07 TCGA-CD-5798-01 19 37643342 37643342 T G ZNF585A Missense_Mutation p.T432P 0.10 deleterious(0) probably_damaging(0.928) TCGA-CD-5798-01 19 41313417 41313417 G A EGLN2 Missense_Mutation p.A377T 0.07 deleterious(0.03) probably_damaging(0.937) TCGA-CD-5798-01 19 51628218 51628218 C A SIGLEC9 5'UTR 0.17 TCGA-CD-5798-01 19 58596469 58596469 C T ZSCAN18 Silent p.P428P 0.13 TCGA-CD-5798-01 1 120539720 120539720 G A NOTCH2 Silent p.Y217Y 0.12 TCGA-CD-5798-01 1 150484934 150484934 C T ECM1 Missense_Mutation p.A424V 0.09 deleterious(0.03) probably_damaging(0.944) TCGA-CD-5798-01 1 160326122 160326122 C T NCSTN Silent p.L542L 0.10 TCGA-CD-5798-01 1 166833124 166833124 G A TADA1 Silent p.S89S 0.09 TCGA-CD-5798-01 1 201618003 201618003 C T NAV1 Silent p.S69S 0.11 TCGA-CD-5798-01 1 209824307 209824307 A T LAMB3 5'UTR 0.08 TCGA-CD-5798-01 1 220191835 220191835 C A EPRS Missense_Mutation p.V484F 0.07 deleterious(0) possibly_damaging(0.698) TCGA-CD-5798-01 1 22974057 22974057 G A C1QC Silent p.S173S 0.15 TCGA-CD-5798-01 1 234603278 234603278 C A TARBP1 Missense_Mutation p.K406N 0.12 deleterious(0.04) benign(0.398) TCGA-CD-5798-01 1 244855285 244855285 A G DESI2 Missense_Mutation p.H105R 0.07 tolerated(0.18) benign(0.005) TCGA-CD-5798-01 1 248436449 248436449 A C OR2T33 Missense_Mutation p.V223G 0.12 deleterious(0) probably_damaging(0.938) TCGA-CD-5798-01 1 40887656 40887656 G A SMAP2 Silent p.Q391Q 0.06 TCGA-CD-5798-01 20 35884866 35884866 C T GHRH Missense_Mutation p.S40N 0.07 tolerated(0.33) benign(0.046) TCGA-CD-5798-01 22 23029519 23029519 T A IGLV3-25 Missense_Mutation p.C41S 0.08 deleterious(0.01) probably_damaging(1) TCGA-CD-5798-01 22 45946460 45946460 C A FBLN1 Missense_Mutation p.F554L 0.07 tolerated(0.27) possibly_damaging(0.787) TCGA-CD-5798-01 2 101099720 101099720 G A NMS Silent p.Q152Q 0.05 TCGA-CD-5798-01 2 103335364 103335364 A C MFSD9 Missense_Mutation p.F314V 0.16 deleterious(0) probably_damaging(0.995) TCGA-CD-5798-01 2 113532634 113532634 G T IL1A 3'UTR 0.13 TCGA-CD-5798-01 2 11964841 11964841 C T LPIN1 Missense_Mutation p.T951I 0.14 deleterious(0.04) benign(0.367) TCGA-CD-5798-01 2 130951728 130951728 G T TUBA3E Silent p.R229R 0.04 TCGA-CD-5798-01 2 135745629 135745629 C T MAP3K19 Silent p.S271S 0.13 TCGA-CD-5798-01 2 179402435 179402435 C T TTN Missense_Mutation p.D33167N 0.08 TCGA-CD-5798-01 2 179472999 179472999 T C TTN Silent p.G17537G 0.08 TCGA-CD-5798-01 2 182343498 182343498 T A ITGA4 Missense_Mutation p.F191I 0.15 deleterious(0) possibly_damaging(0.835) TCGA-CD-5798-01 2 230312248 230312248 C T DNER Missense_Mutation p.G424R 0.07 deleterious(0) probably_damaging(0.999) TCGA-CD-5798-01 2 31572580 31572580 G A XDH Missense_Mutation p.R981W 0.11 deleterious(0) probably_damaging(0.999) TCGA-CD-5798-01 2 37035950 37035950 C T VIT Silent p.N575N 0.10 TCGA-CD-5798-01 2 79312241 79312241 G T REG1B 3'UTR 0.22 TCGA-CD-5798-01 3 123813587 123813587 C T KALRN 5'UTR 0.13 TCGA-CD-5798-01 3 128987415 128987415 C T COPG1 Missense_Mutation p.L576F 0.07 tolerated(0.09) possibly_damaging(0.707) TCGA-CD-5798-01 3 186507140 186507140 G A EIF4A2 3'UTR 0.08 TCGA-CD-5798-01 3 60522603 60522603 C A FHIT Silent p.V31V 0.06 TCGA-CD-5798-01 4 189061023 189061023 C T TRIML1 Missense_Mutation p.A104V 0.13 tolerated(0.58) benign(0.001) TCGA-CD-5798-01 5 10992707 10992707 G A CTNND2 Missense_Mutation p.T1056M 0.10 deleterious(0) probably_damaging(0.972) TCGA-CD-5798-01 5 13717530 13717530 T A DNAH5 Missense_Mutation p.K4200M 0.05 probably_damaging(0.934) TCGA-CD-5798-01 5 140229950 140229950 G A PCDHA9 Missense_Mutation p.V624M 0.07 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-CD-5798-01 5 140346755 140346755 A T PCDHAC2 Missense_Mutation p.E135V 0.16 deleterious(0.01) benign(0.089) TCGA-CD-5798-01 5 140627003 140627003 G A PCDHB15 Silent p.A619A 0.08 TCGA-CD-5798-01 5 140745345 140745345 A G PCDHGA5 Missense_Mutation p.D483G 0.09 deleterious_low_confidence(0) benign(0.014) TCGA-CD-5798-01 5 161576230 161576230 T G GABRG2 Missense_Mutation p.F387V 0.08 deleterious(0) probably_damaging(0.995) TCGA-CD-5798-01 5 475096 475096 C T SLC9A3 Silent p.L801L 0.33 TCGA-CD-5798-01 5 475129 475129 C G SLC9A3 Missense_Mutation p.Q790H 0.20 tolerated(0.13) possibly_damaging(0.736) TCGA-CD-5798-01 5 475242 475242 C G SLC9A3 Missense_Mutation p.D753H 0.15 deleterious(0.01) probably_damaging(0.938) TCGA-CD-5798-01 5 79733463 79733463 G A ZFYVE16 Missense_Mutation p.R320K 0.11 tolerated(0.93) benign(0.001) TCGA-CD-5798-01 6 109767510 109767510 G A MICAL1 Missense_Mutation p.R804W 0.12 deleterious(0) benign(0.021) TCGA-CD-5798-01 6 24654688 24654688 A C TDP2 Missense_Mutation p.I196M 0.09 deleterious(0.02) benign(0.41) TCGA-CD-5798-01 6 42665945 42665945 A T PRPH2 3'UTR 0.13 TCGA-CD-5798-01 6 84233267 84233267 G A PRSS35 Missense_Mutation p.R36Q 0.08 tolerated(0.46) benign(0.002) TCGA-CD-5798-01 6 88854252 88854252 C T CNR1 Missense_Mutation p.A248T 0.10 deleterious(0.01) possibly_damaging(0.754) TCGA-CD-5798-01 7 102968125 102968125 G C DNAJC2 Missense_Mutation p.D136E 0.08 deleterious(0) benign(0.426) TCGA-CD-5798-01 7 21628979 21628979 C A DNAH11 Missense_Mutation p.F709L 0.10 benign(0.001) TCGA-CD-5798-01 7 26225016 26225022 AAGTAGA - NFE2L3 Frame_Shift_Del p.L566Ffs*4 0.08 TCGA-CD-5798-01 7 41739722 41739722 A T INHBA Missense_Mutation p.L84Q 0.02 deleterious(0) probably_damaging(0.995) TCGA-CD-5798-01 7 73609702 73609702 C T EIF4H 3'UTR 0.30 TCGA-CD-5798-01 8 11400743 11400743 G C BLK Missense_Mutation p.V4L 0.11 tolerated(0.17) benign(0) TCGA-CD-5798-01 8 28385012 28385012 C T FZD3 Silent p.Y245Y 0.10 TCGA-CD-5798-01 8 37730604 37730604 G A RAB11FIP1 Silent p.G572G 0.04 TCGA-CD-5798-01 8 38374012 38374012 G A C8orf86 Missense_Mutation p.H112Y 0.07 deleterious_low_confidence(0) benign(0.291) TCGA-CD-5798-01 8 65509340 65509340 T G CYP7B1 Missense_Mutation p.K460N 0.06 deleterious(0) probably_damaging(1) TCGA-CD-5798-01 8 99224702 99224702 G A NIPAL2 Missense_Mutation p.L196F 0.08 deleterious(0.02) probably_damaging(0.92) TCGA-CD-5798-01 9 119976957 119976957 C T ASTN2 Missense_Mutation p.R232H 0.08 deleterious_low_confidence(0) unknown(0) TCGA-CD-5798-01 9 121929254 121929254 T C BRINP1 3'UTR 0.19 TCGA-CD-5798-01 9 130551812 130551812 G A CDK9 Missense_Mutation p.R370H 0.06 tolerated_low_confidence(0.06) benign(0.077) TCGA-CD-5798-01 9 139836994 139836994 C T FBXW5 Intron 0.20 TCGA-CD-5798-01 9 140646788 140646788 C T EHMT1 Silent p.D392D 0.12 TCGA-CD-5798-01 9 36087862 36087862 C T RECK Missense_Mutation p.S270F 0.05 tolerated(0.11) benign(0.05) TCGA-CD-5798-01 X 125685736 125685736 A C DCAF12L1 Missense_Mutation p.F286V 0.22 tolerated(0.06) probably_damaging(0.999) TCGA-CD-5798-01 X 139865818 139865818 A C CDR1 Missense_Mutation p.I238M 0.18 deleterious(0.02) possibly_damaging(0.506) TCGA-CD-5798-01 X 151996314 151996314 C A CETN2 3'UTR 0.18 TCGA-CD-5798-01 X 153284492 153284492 G A IRAK1 Silent p.L158L 0.28 TCGA-CD-5798-01 X 16870931 16870931 T G RBBP7 Missense_Mutation p.N320H 0.21 deleterious(0) probably_damaging(0.999) TCGA-CD-5798-01 X 54785304 54785304 C T ITIH6 Silent p.T401T 0.16 TCGA-CD-5798-01 X 5811421 5811421 C T NLGN4X Missense_Mutation p.A630T 0.04 tolerated(0.63) benign(0) TCGA-CD-5798-01 X 63568644 63568644 A G MTMR8 Missense_Mutation p.S210P 0.06 deleterious(0.02) benign(0.042) TCGA-CD-5798-01 X 71426048 71426049 GT - ERCC6L Frame_Shift_Del p.L857Afs*9 0.14 TCGA-CD-5799-01 10 135000076 135000076 C T KNDC1 Silent p.A408A 0.41 TCGA-CD-5799-01 10 49687662 49687662 C G ARHGAP22 Silent p.S156S 0.20 TCGA-CD-5799-01 11 27360462 27360462 G T CCDC34 Missense_Mutation p.P343H 0.58 deleterious(0.02) benign(0.037) TCGA-CD-5799-01 12 118198881 118198881 C T KSR2 Silent p.A307A 0.03 TCGA-CD-5799-01 13 52863973 52863973 G A RP11-248G5.8 RNA 0.35 TCGA-CD-5799-01 15 26866506 26866506 C T GABRB3 Missense_Mutation p.R139H 0.33 deleterious(0) probably_damaging(0.957) TCGA-CD-5799-01 15 31818561 31818561 G A OTUD7A Missense_Mutation p.T288M 0.30 deleterious(0.01) benign(0.22) TCGA-CD-5799-01 15 43102862 43102862 A G TTBK2 Missense_Mutation p.F258L 0.04 deleterious(0.03) benign(0.364) TCGA-CD-5799-01 15 86697783 86697783 G T AGBL1 Missense_Mutation p.A83S 0.37 tolerated(0.66) possibly_damaging(0.666) TCGA-CD-5799-01 16 68847277 68847277 A T CDH1 Missense_Mutation p.D400V 0.66 deleterious(0) probably_damaging(1) TCGA-CD-5799-01 17 25936339 25936339 G A KSR1 Missense_Mutation p.V622M 0.06 deleterious(0.01) benign(0.054) TCGA-CD-5799-01 17 27581346 27581346 G A CRYBA1 Silent p.S209S 0.16 TCGA-CD-5799-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.55 deleterious(0) probably_damaging(1) TCGA-CD-5799-01 17 76521203 76521203 G A DNAH17 Missense_Mutation p.A1247V 0.67 benign(0.016) TCGA-CD-5799-01 18 48591917 48591931 TCGCTTTTGTTTGGG - SMAD4 In_Frame_Del p.R361_G365del 0.70 TCGA-CD-5799-01 18 5438045 5438045 T A EPB41L3 Missense_Mutation p.E198D 0.43 deleterious(0) probably_damaging(0.991) TCGA-CD-5799-01 19 10100039 10100039 G T COL5A3 Missense_Mutation p.H684N 0.44 unknown(0) TCGA-CD-5799-01 19 21512204 21512204 T G ZNF708 5'UTR 0.25 TCGA-CD-5799-01 19 22271685 22271685 G C ZNF257 Missense_Mutation p.G378A 0.19 deleterious(0.01) probably_damaging(0.982) TCGA-CD-5799-01 19 50249743 50249743 C T TSKS Missense_Mutation p.G326S 0.08 tolerated(0.66) benign(0.12) TCGA-CD-5799-01 19 57746374 57746374 A T AURKC Missense_Mutation p.Y236F 0.13 tolerated(0.14) benign(0.009) TCGA-CD-5799-01 19 6710823 6710823 G A C3 Missense_Mutation p.R505C 0.38 deleterious(0) probably_damaging(0.999) TCGA-CD-5799-01 19 7132258 7132258 G A INSR Missense_Mutation p.P918L 0.09 deleterious(0) probably_damaging(0.998) TCGA-CD-5799-01 1 158735615 158735615 G T OR6N1 Missense_Mutation p.N286K 0.21 deleterious(0) probably_damaging(0.999) TCGA-CD-5799-01 1 160001391 160001391 A G PIGM Missense_Mutation p.Y47H 0.04 deleterious(0) probably_damaging(0.957) TCGA-CD-5799-01 20 48525025 48525025 C A SPATA2 Translation_Start_Site p.M1? 0.05 deleterious_low_confidence(0) benign(0.052) TCGA-CD-5799-01 20 62658497 62658497 G A PRPF6 Missense_Mutation p.A731T 0.09 tolerated(0.51) benign(0.119) TCGA-CD-5799-01 21 14417526 14417526 G A RNU6-614P 5'Flank 0.08 TCGA-CD-5799-01 21 32493037 32493037 G A TIAM1 Silent p.P1475P 0.31 TCGA-CD-5799-01 21 33044158 33044158 A C SCAF4 Missense_Mutation p.F1000V 0.04 unknown(0) TCGA-CD-5799-01 21 47549381 47549381 C T COL6A2 Intron 0.50 TCGA-CD-5799-01 2 169404164 169404164 G T CERS6 Missense_Mutation p.A77S 0.11 deleterious(0) probably_damaging(0.993) TCGA-CD-5799-01 2 179736940 179736940 G A CCDC141 Missense_Mutation p.R667W 0.11 tolerated(0.53) benign(0.007) TCGA-CD-5799-01 2 204735471 204735471 T C CTLA4 Missense_Mutation p.M91T 0.44 tolerated(0.69) benign(0.001) TCGA-CD-5799-01 2 230902153 230902153 C T SLC16A14 Silent p.P492P 0.40 TCGA-CD-5799-01 2 237490287 237490287 C T ACKR3 3'UTR 0.45 TCGA-CD-5799-01 2 97007217 97007217 C T NCAPH Intron 0.24 TCGA-CD-5799-01 3 126724992 126724992 C T PLXNA1 Silent p.F656F 0.04 TCGA-CD-5799-01 3 12858630 12858630 T C CAND2 Silent p.S733S 0.67 TCGA-CD-5799-01 3 172165804 172165804 T A GHSR Missense_Mutation p.I134F 0.39 deleterious(0) probably_damaging(0.991) TCGA-CD-5799-01 3 184024196 184024196 C G PSMD2 Missense_Mutation p.D621E 0.31 tolerated(0.98) benign(0.002) TCGA-CD-5799-01 3 52837878 52837878 G A ITIH3 Missense_Mutation p.A573T 0.16 tolerated(0.07) benign(0.04) TCGA-CD-5799-01 5 140249981 140249981 G A PCDHA11 Silent p.S431S 0.14 TCGA-CD-5799-01 5 140250857 140250857 G A PCDHA11 Silent p.S723S 0.07 TCGA-CD-5799-01 5 140476930 140476930 C T PCDHB2 3'UTR 0.33 TCGA-CD-5799-01 5 176734800 176734800 G A MXD3 Missense_Mutation p.R163C 0.50 deleterious(0) probably_damaging(0.977) TCGA-CD-5799-01 5 66429354 66429354 C T MAST4 Silent p.T702T 0.37 TCGA-CD-5799-01 6 20113188 20113188 C T MBOAT1 Silent p.L376L 0.28 TCGA-CD-5799-01 6 47776100 47776100 G T OPN5 Missense_Mutation p.A323S 0.28 tolerated_low_confidence(0.35) benign(0.039) TCGA-CD-5799-01 8 31014945 31014945 C T WRN Missense_Mutation p.A1294V 0.10 deleterious(0.02) possibly_damaging(0.465) TCGA-CD-5799-01 9 125281714 125281714 A C OR1J4 Missense_Mutation p.T99P 0.54 deleterious_low_confidence(0.01) benign(0.002) TCGA-CD-5799-01 9 21971111 21971111 G A CDKN2A Missense_Mutation p.H83Y 0.67 deleterious(0) probably_damaging(0.999) TCGA-CD-5799-01 9 27949698 27949698 G A LINGO2 Silent p.R324R 0.59 TCGA-CD-5799-01 9 88161898 88161898 T A AGTPBP1 3'UTR 0.13 TCGA-CD-5799-01 9 95073453 95073453 C G NOL8 Missense_Mutation p.S816T 0.15 tolerated(0.1) benign(0.015) TCGA-CD-5799-01 X 105279201 105279201 C T SERPINA7 Silent p.L266L 0.06 TCGA-CD-5799-01 X 140995215 140995215 T A MAGEC1 Silent p.P675P 0.05 TCGA-CD-5799-01 X 48116745 48116745 G T SSX1 Missense_Mutation p.K23N 0.08 deleterious(0) possibly_damaging(0.48) TCGA-CD-5800-01 10 100183378 100183378 C T HPS1 Missense_Mutation p.R527K 0.21 deleterious(0.01) probably_damaging(0.997) TCGA-CD-5800-01 10 104118439 104118439 G C GBF1 Missense_Mutation p.E322Q 0.05 tolerated(0.25) benign(0.001) TCGA-CD-5800-01 10 116361626 116361626 G C ABLIM1 Silent p.V113V 0.07 TCGA-CD-5800-01 10 135015105 135015105 C T KNDC1 Silent p.F1030F 0.34 TCGA-CD-5800-01 10 52603780 52603780 A C A1CF Missense_Mutation p.F76V 0.07 deleterious(0) probably_damaging(0.999) TCGA-CD-5800-01 10 70143864 70143864 G A RUFY2 Missense_Mutation p.H291Y 0.20 deleterious(0) possibly_damaging(0.491) TCGA-CD-5800-01 10 7759715 7759715 C T ITIH2 Silent p.I198I 0.17 TCGA-CD-5800-01 10 97983645 97983645 C T BLNK Silent p.P154P 0.16 TCGA-CD-5800-01 11 103907617 103907617 C A DDI1 Missense_Mutation p.P23T 0.12 tolerated(0.18) benign(0.156) TCGA-CD-5800-01 11 111414845 111414845 G T LAYN Missense_Mutation p.D103Y 0.12 deleterious(0) probably_damaging(1) TCGA-CD-5800-01 11 12241844 12241844 T A MICAL2 Missense_Mutation p.Y349N 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-CD-5800-01 11 18636652 18636652 G T SPTY2D1 Missense_Mutation p.T390K 0.33 tolerated(0.32) benign(0.043) TCGA-CD-5800-01 11 27520261 27520261 C T LIN7C Missense_Mutation p.V177I 0.14 tolerated(0.66) probably_damaging(0.986) TCGA-CD-5800-01 11 28090850 28090850 C T KIF18A Missense_Mutation p.E516K 0.07 deleterious(0.05) benign(0.027) TCGA-CD-5800-01 11 3681342 3681342 G A ART1 Missense_Mutation p.G198E 0.21 deleterious(0) probably_damaging(0.999) TCGA-CD-5800-01 11 5410661 5410661 C T OR51M1 Silent p.F11F 0.14 TCGA-CD-5800-01 11 61071504 61071504 G A DDB1 Missense_Mutation p.R889W 0.48 deleterious(0) probably_damaging(0.999) TCGA-CD-5800-01 11 65780867 65780867 T A CST6 Missense_Mutation p.M149K 0.19 deleterious_low_confidence(0) benign(0.029) TCGA-CD-5800-01 11 66807437 66807437 C G SYT12 Silent p.L128L 0.06 TCGA-CD-5800-01 11 68566686 68566686 G A CPT1A Silent p.Y231Y 0.10 TCGA-CD-5800-01 11 77635908 77635908 G A INTS4 Missense_Mutation p.H468Y 0.07 deleterious(0) probably_damaging(0.993) TCGA-CD-5800-01 12 122398586 122398586 C G WDR66 Missense_Mutation p.S743R 0.08 tolerated(0.11) benign(0.039) TCGA-CD-5800-01 12 122845543 122845543 G A CLIP1 Missense_Mutation p.A323V 0.11 deleterious(0) probably_damaging(0.957) TCGA-CD-5800-01 12 132514347 132514347 G A EP400 Missense_Mutation p.G1828D 0.11 unknown(0) TCGA-CD-5800-01 12 20903643 20903643 G C SLCO1C1 Missense_Mutation p.L611F 0.11 deleterious(0.03) benign(0.114) TCGA-CD-5800-01 12 38714150 38714150 G A ALG10B Missense_Mutation p.R186Q 0.19 deleterious(0) probably_damaging(1) TCGA-CD-5800-01 12 49743129 49743129 C T DNAJC22 Silent p.A158A 0.14 TCGA-CD-5800-01 12 58024855 58024855 G A B4GALNT1 Missense_Mutation p.A133V 0.20 tolerated(0.21) benign(0.11) TCGA-CD-5800-01 12 73056851 73056851 A T TRHDE Missense_Mutation p.N984I 0.11 deleterious(0.03) benign(0.032) TCGA-CD-5800-01 13 24895530 24895530 C T AL359736.1 Missense_Mutation p.V13M 0.06 deleterious(0) probably_damaging(0.987) TCGA-CD-5800-01 13 39266549 39266549 G A FREM2 Missense_Mutation p.D1690N 0.14 deleterious(0.02) probably_damaging(0.986) TCGA-CD-5800-01 13 52952350 52952350 G C THSD1 Missense_Mutation p.F585L 0.21 deleterious(0) probably_damaging(0.999) TCGA-CD-5800-01 13 53624990 53624991 TA - OLFM4 3'UTR 0.19 TCGA-CD-5800-01 13 60240797 60240797 G A DIAPH3 Missense_Mutation p.T1168M 0.07 tolerated_low_confidence(1) benign(0.003) TCGA-CD-5800-01 13 76374837 76374837 C G LMO7 5'UTR 0.08 TCGA-CD-5800-01 13 78492651 78492651 C T EDNRB Missense_Mutation p.G110S 0.11 tolerated_low_confidence(0.12) benign(0.04) TCGA-CD-5800-01 14 101349151 101349151 C T RTL1 Missense_Mutation p.G659R 0.38 deleterious(0.01) probably_damaging(0.987) TCGA-CD-5800-01 14 20295827 20295827 T G OR4N2 Missense_Mutation p.S74A 0.05 tolerated(0.09) benign(0.033) TCGA-CD-5800-01 14 42356201 42356201 C T LRFN5 Missense_Mutation p.L125F 0.11 deleterious(0) probably_damaging(1) TCGA-CD-5800-01 14 74411425 74411425 G A FAM161B Missense_Mutation p.R243C 0.10 deleterious(0) probably_damaging(1) TCGA-CD-5800-01 14 74428508 74428508 A G COQ6 Missense_Mutation p.T427A 0.09 deleterious(0.02) benign(0.403) TCGA-CD-5800-01 14 92469890 92469890 G C TRIP11 Missense_Mutation p.T1477R 0.09 tolerated(0.08) benign(0.069) TCGA-CD-5800-01 14 94847294 94847294 G A SERPINA1 Silent p.F277F 0.06 TCGA-CD-5800-01 15 25616180 25616180 C A UBE3A Missense_Mutation p.V384L 0.05 tolerated(1) benign(0) TCGA-CD-5800-01 15 30665316 30665316 G A CHRFAM7A Missense_Mutation p.R65C 0.19 deleterious(0) probably_damaging(1) TCGA-CD-5800-01 15 50868042 50868042 A C TRPM7 Intron 0.38 TCGA-CD-5800-01 15 55651934 55651934 C T CCPG1 Silent p.Q679Q 0.24 TCGA-CD-5800-01 16 27480772 27480772 C T GTF3C1 Silent p.A1638A 0.20 TCGA-CD-5800-01 16 67293838 67293838 C T SLC9A5 Missense_Mutation p.P611S 0.19 tolerated(0.26) possibly_damaging(0.637) TCGA-CD-5800-01 16 69745175 69745175 G C NQO1 Missense_Mutation p.L177V 0.13 deleterious(0) probably_damaging(0.996) TCGA-CD-5800-01 16 70012175 70012175 G A RP11-419C5.2 RNA 0.05 TCGA-CD-5800-01 16 70515668 70515668 C T COG4 Missense_Mutation p.R702Q 0.17 tolerated(0.06) possibly_damaging(0.888) TCGA-CD-5800-01 16 89350371 89350371 G A ANKRD11 Missense_Mutation p.S860L 0.13 probably_damaging(0.99) TCGA-CD-5800-01 17 1782886 1782886 G A RPA1 Missense_Mutation p.A329T 0.28 deleterious(0.02) benign(0.019) TCGA-CD-5800-01 17 34199417 34199417 C G CCL5 Missense_Mutation p.W80C 0.10 deleterious(0) probably_damaging(1) TCGA-CD-5800-01 17 40049326 40049326 G A ACLY Nonsense_Mutation p.R521* 0.23 TCGA-CD-5800-01 17 40261296 40261296 G A DHX58 Missense_Mutation p.R224C 0.15 deleterious(0) probably_damaging(0.992) TCGA-CD-5800-01 17 41141403 41141403 G A RUNDC1 Missense_Mutation p.E235K 0.15 deleterious(0) possibly_damaging(0.83) TCGA-CD-5800-01 17 42987519 42987519 C T GFAP 3'Flank 0.13 TCGA-CD-5800-01 17 5312217 5312217 G A NUP88 Silent p.T231T 0.50 TCGA-CD-5800-01 17 72691089 72691089 C A CD300LF 3'UTR 0.09 TCGA-CD-5800-01 17 7578526 7578526 C A TP53 Missense_Mutation p.C135F 0.50 deleterious(0) probably_damaging(1) TCGA-CD-5800-01 17 7748912 7748912 C T KDM6B Missense_Mutation p.R14W 0.13 unknown(0) TCGA-CD-5800-01 18 21124448 21124448 C T NPC1 Missense_Mutation p.V664M 0.13 deleterious(0) probably_damaging(1) TCGA-CD-5800-01 18 22805849 22805849 G A ZNF521 Missense_Mutation p.S678F 0.09 deleterious(0) probably_damaging(0.999) TCGA-CD-5800-01 18 32834016 32834016 C G ZSCAN30 Missense_Mutation p.D295H 0.06 tolerated(1) benign(0) TCGA-CD-5800-01 18 43438665 43438665 C T EPG5 Silent p.Q2364Q 0.07 TCGA-CD-5800-01 18 7567872 7567872 C T PTPRM Missense_Mutation p.A19V 0.70 tolerated_low_confidence(0.32) unknown(0) TCGA-CD-5800-01 18 8069752 8069752 G A PTPRM Missense_Mutation p.E401K 0.06 deleterious(0.01) benign(0.431) TCGA-CD-5800-01 19 11545634 11545634 G T CCDC151 Missense_Mutation p.H68Q 0.04 tolerated(0.41) benign(0.034) TCGA-CD-5800-01 19 11917039 11917039 C T ZNF491 Nonsense_Mutation p.R91* 0.03 TCGA-CD-5800-01 19 19261546 19261546 G A MEF2BNB-MEF2B 5'UTR 0.10 TCGA-CD-5800-01 19 22156661 22156661 G T ZNF208 Missense_Mutation p.T392N 0.11 deleterious(0.03) probably_damaging(0.993) TCGA-CD-5800-01 19 39321782 39321782 C T ECH1 Silent p.K95K 0.12 TCGA-CD-5800-01 19 42558546 42558546 C T GRIK5 Missense_Mutation p.G328S 0.12 tolerated(0.13) probably_damaging(0.997) TCGA-CD-5800-01 19 46498688 46498688 A G CCDC61 5'Flank 0.30 TCGA-CD-5800-01 19 53571593 53571594 - T ZNF160 Frame_Shift_Ins p.P732Tfs*5 0.12 TCGA-CD-5800-01 19 59065483 59065483 G A CHMP2A Nonsense_Mutation p.R33* 0.09 TCGA-CD-5800-01 19 6712411 6712411 C G C3 Missense_Mutation p.V376L 0.38 deleterious(0) probably_damaging(0.976) TCGA-CD-5800-01 19 6833745 6833745 G A VAV1 Splice_Site p.X577_splice 0.30 TCGA-CD-5800-01 1 108152584 108152584 G A VAV3 Missense_Mutation p.P662S 0.08 tolerated(0.1) possibly_damaging(0.721) TCGA-CD-5800-01 1 114133187 114133188 - A MAGI3 Frame_Shift_Ins p.F282Lfs*2 0.11 TCGA-CD-5800-01 1 117618400 117618400 C T TTF2 Silent p.A398A 0.23 TCGA-CD-5800-01 1 153914789 153914789 C T DENND4B Silent p.P228P 0.14 TCGA-CD-5800-01 1 167095080 167095080 G A DUSP27 Missense_Mutation p.A238T 0.11 deleterious(0) probably_damaging(0.993) TCGA-CD-5800-01 1 168169139 168169139 A G TIPRL Splice_Site p.X226_splice 0.07 TCGA-CD-5800-01 1 169822145 169822145 G A C1orf112 3'UTR 0.11 TCGA-CD-5800-01 1 174606593 174606593 A T RABGAP1L Silent p.G597G 0.06 TCGA-CD-5800-01 1 179989418 179989418 A C CEP350 Missense_Mutation p.S837R 0.07 possibly_damaging(0.774) TCGA-CD-5800-01 1 197112225 197112225 G A ASPM Missense_Mutation p.S386L 0.11 tolerated(0.11) benign(0.007) TCGA-CD-5800-01 1 22211060 22211060 G T HSPG2 Missense_Mutation p.Q539K 0.05 benign(0.004) TCGA-CD-5800-01 1 241959588 241959588 T A WDR64 Silent p.L1026L 0.13 TCGA-CD-5800-01 1 33291908 33291908 G A S100PBP Missense_Mutation p.E70K 0.07 tolerated(0.24) probably_damaging(0.921) TCGA-CD-5800-01 1 36807526 36807526 G A STK40 Missense_Mutation p.R380C 0.16 deleterious_low_confidence(0.02) benign(0.296) TCGA-CD-5800-01 1 41990509 41990510 - C HIVEP3 Frame_Shift_Ins p.I1761Nfs*18 0.14 TCGA-CD-5800-01 1 54059815 54059815 C T GLIS1 Missense_Mutation p.R254Q 0.09 deleterious(0) probably_damaging(0.997) TCGA-CD-5800-01 1 68512693 68512693 G A DIRAS3 Silent p.D96D 0.09 TCGA-CD-5800-01 1 79386012 79386012 C T ELTD1 Silent p.L439L 0.19 TCGA-CD-5800-01 20 2384268 2384268 G A TGM6 Missense_Mutation p.E379K 0.06 deleterious(0) benign(0.133) TCGA-CD-5800-01 20 31291840 31291840 C T COMMD7 Missense_Mutation p.E171K 0.07 deleterious(0.04) possibly_damaging(0.788) TCGA-CD-5800-01 20 35060202 35060202 G A DLGAP4 Missense_Mutation p.D28N 0.12 tolerated(0.1) probably_damaging(0.983) TCGA-CD-5800-01 20 50407885 50407885 G A SALL4 Silent p.L379L 0.05 TCGA-CD-5800-01 20 52193761 52193761 C T ZNF217 Silent p.L514L 0.05 TCGA-CD-5800-01 20 55918512 55918512 T C SPO11 Missense_Mutation p.I396T 0.07 deleterious(0) possibly_damaging(0.881) TCGA-CD-5800-01 20 57428680 57428680 G A GNAS Silent p.Q120Q 0.09 TCGA-CD-5800-01 20 57430185 57430185 G A GNAS Missense_Mutation p.R622Q 0.12 tolerated_low_confidence(0.22) benign(0.117) TCGA-CD-5800-01 20 60907448 60907448 C T LAMA5 Missense_Mutation p.E1178K 0.16 benign(0.275) TCGA-CD-5800-01 20 62126392 62126392 C T EEF1A2 Silent p.K129K 0.12 TCGA-CD-5800-01 20 62493340 62493340 C G ABHD16B Missense_Mutation p.D149E 0.19 deleterious(0.03) probably_damaging(0.999) TCGA-CD-5800-01 21 10970031 10970031 C T TPTE Missense_Mutation p.E33K 0.13 tolerated(0.88) benign(0.001) TCGA-CD-5800-01 21 36171641 36171641 G A RUNX1 Silent p.S308S 0.08 TCGA-CD-5800-01 21 41710048 41710048 C T DSCAM Missense_Mutation p.S588N 0.09 deleterious(0.02) probably_damaging(0.969) TCGA-CD-5800-01 22 29456681 29456681 T C C22orf31 Missense_Mutation p.N52D 0.46 tolerated_low_confidence(0.34) benign(0.003) TCGA-CD-5800-01 22 37602944 37602944 G A SSTR3 Missense_Mutation p.A300V 0.54 tolerated(1) benign(0.037) TCGA-CD-5800-01 22 42610379 42610379 C A TCF20 Missense_Mutation p.Q311H 0.05 probably_damaging(0.993) TCGA-CD-5800-01 2 100912008 100912008 G T LONRF2 Missense_Mutation p.A495E 0.21 deleterious(0) possibly_damaging(0.796) TCGA-CD-5800-01 2 107004048 107004048 T C PLGLA RNA 0.10 TCGA-CD-5800-01 2 116538567 116538567 T C DPP10 Silent p.C497C 0.31 TCGA-CD-5800-01 2 155566118 155566118 C T KCNJ3 Missense_Mutation p.R236W 0.15 deleterious(0) probably_damaging(1) TCGA-CD-5800-01 2 166847826 166847826 C T SCN1A Missense_Mutation p.D1987N 0.14 tolerated(0.07) probably_damaging(0.999) TCGA-CD-5800-01 2 168100087 168100087 G T XIRP2 Missense_Mutation p.V729F 0.14 probably_damaging(1) TCGA-CD-5800-01 2 179482993 179482993 C T TTN Missense_Mutation p.R15731H 0.16 TCGA-CD-5800-01 2 207429756 207429756 C A ADAM23 Missense_Mutation p.T453K 0.16 tolerated(0.33) benign(0.417) TCGA-CD-5800-01 2 44428441 44428441 G C PPM1B Missense_Mutation p.E35Q 0.07 tolerated(0.11) benign(0.415) TCGA-CD-5800-01 2 95952270 95952270 G A PROM2 Missense_Mutation p.G664E 0.08 tolerated(0.3) benign(0.022) TCGA-CD-5800-01 3 134851754 134851754 C T EPHB1 Missense_Mutation p.T387M 0.14 deleterious(0.03) benign(0.223) TCGA-CD-5800-01 3 160219855 160219855 T C KPNA4 3'UTR 0.11 TCGA-CD-5800-01 3 173322864 173322864 A G NLGN1 Missense_Mutation p.Y159C 0.10 deleterious(0) probably_damaging(0.999) TCGA-CD-5800-01 3 178937410 178937410 G A PIK3CA Missense_Mutation p.E600K 0.09 deleterious(0) possibly_damaging(0.869) TCGA-CD-5800-01 3 25833434 25833434 C G OXSM Nonsense_Mutation p.S308* 0.05 TCGA-CD-5800-01 3 37845379 37845379 C T ITGA9 Silent p.I985I 0.06 TCGA-CD-5800-01 3 42788762 42788762 C T CCDC13 Missense_Mutation p.R236Q 0.13 deleterious(0.04) probably_damaging(1) TCGA-CD-5800-01 3 47378200 47378200 G A KLHL18 Silent p.P358P 0.17 TCGA-CD-5800-01 3 47913507 47913507 C A MAP4 Missense_Mutation p.K802N 0.12 deleterious(0.04) probably_damaging(0.938) TCGA-CD-5800-01 3 56657367 56657367 T C FAM208A 3'UTR 0.07 TCGA-CD-5800-01 3 93646135 93646135 T C PROS1 Missense_Mutation p.K65E 0.32 deleterious(0) probably_damaging(0.992) TCGA-CD-5800-01 4 1165840 1165840 G A SPON2 Missense_Mutation p.A7V 0.20 tolerated_low_confidence(0.67) unknown(0) TCGA-CD-5800-01 4 119618350 119618350 G A METTL14 Missense_Mutation p.D173N 0.16 tolerated(0.05) possibly_damaging(0.552) TCGA-CD-5800-01 4 1656730 1656730 G A FAM53A Missense_Mutation p.S286F 0.10 deleterious(0) probably_damaging(0.996) TCGA-CD-5800-01 4 170913336 170913336 G A MFAP3L Silent p.R141R 0.14 TCGA-CD-5800-01 4 17609194 17609194 C T LAP3 Silent p.F514F 0.14 TCGA-CD-5800-01 4 17814759 17814759 G C NCAPG Missense_Mutation p.V179L 0.16 deleterious(0.01) possibly_damaging(0.844) TCGA-CD-5800-01 4 183696162 183696162 G A TENM3 Silent p.P1720P 0.35 TCGA-CD-5800-01 4 31144151 31144151 G A PCDH7 Missense_Mutation p.E1150K 0.09 deleterious(0.04) probably_damaging(0.994) TCGA-CD-5800-01 4 36069743 36069743 T G ARAP2 Missense_Mutation p.N1634T 0.16 tolerated(0.13) benign(0.075) TCGA-CD-5800-01 4 66467877 66467877 T G EPHA5 Missense_Mutation p.K131T 0.09 deleterious(0.01) probably_damaging(0.992) TCGA-CD-5800-01 4 79793071 79793071 C T BMP2K Missense_Mutation p.P526L 0.12 deleterious_low_confidence(0.03) unknown(0) TCGA-CD-5800-01 4 96127903 96127903 C A UNC5C Missense_Mutation p.S593I 0.26 deleterious(0) possibly_damaging(0.876) TCGA-CD-5800-01 5 1264673 1264673 C T TERT Missense_Mutation p.V897M 0.45 tolerated(0.32) benign(0.041) TCGA-CD-5800-01 5 13754330 13754330 G A DNAH5 Nonsense_Mutation p.Q3513* 0.12 TCGA-CD-5800-01 5 140530019 140530019 C T PCDHB6 Missense_Mutation p.R61W 0.07 deleterious_low_confidence(0.01) probably_damaging(0.941) TCGA-CD-5800-01 5 140725213 140725213 G A PCDHGA3 Missense_Mutation p.G538E 0.16 deleterious_low_confidence(0) probably_damaging(1) TCGA-CD-5800-01 5 140755983 140755983 C T PCDHGA6 Missense_Mutation p.T778M 0.15 tolerated_low_confidence(0.09) benign(0.317) TCGA-CD-5800-01 5 161576273 161576273 G A GABRG2 Missense_Mutation p.S401N 0.05 tolerated(0.33) probably_damaging(0.995) TCGA-CD-5800-01 5 5461956 5461956 C T KIAA0947 Missense_Mutation p.L837F 0.08 tolerated(0.71) benign(0.033) TCGA-CD-5800-01 5 86700776 86700776 C T CCNH Missense_Mutation p.D192N 0.15 deleterious(0) benign(0.017) TCGA-CD-5800-01 6 109691643 109691643 G A CD164 Missense_Mutation p.S133F 0.07 deleterious(0.01) probably_damaging(0.951) TCGA-CD-5800-01 6 12015818 12015818 T G HIVEP1 5'UTR 0.38 TCGA-CD-5800-01 6 142539792 142539792 G A VTA1 3'UTR 0.06 TCGA-CD-5800-01 6 152563502 152563502 C G SYNE1 Missense_Mutation p.S6589T 0.05 benign(0.053) TCGA-CD-5800-01 6 152642497 152642497 C T SYNE1 Missense_Mutation p.R5371Q 0.14 benign(0.007) TCGA-CD-5800-01 6 16328031 16328031 G A ATXN1 Missense_Mutation p.R171C 0.05 deleterious(0) probably_damaging(0.998) TCGA-CD-5800-01 6 163736030 163736030 A C PACRG 3'UTR 0.16 TCGA-CD-5800-01 6 38702323 38702323 G A DNAH8 Silent p.P11P 0.21 TCGA-CD-5800-01 6 41711094 41711094 G A PGC Missense_Mutation p.S121F 0.50 deleterious(0) probably_damaging(0.962) TCGA-CD-5800-01 7 105658403 105658403 G C CDHR3 Missense_Mutation p.W513S 0.24 deleterious(0) probably_damaging(0.979) TCGA-CD-5800-01 7 106508257 106508257 C T PIK3CG Missense_Mutation p.A84V 0.12 tolerated(0.52) benign(0.001) TCGA-CD-5800-01 7 106836508 106836508 A - HBP1 Frame_Shift_Del p.K433Sfs*6 0.17 TCGA-CD-5800-01 7 128038597 128038597 G A IMPDH1 Silent p.N315N 0.09 TCGA-CD-5800-01 7 134852517 134852517 C T C7orf49 Silent p.E60E 0.16 TCGA-CD-5800-01 7 141478883 141478883 C A TAS2R4 Missense_Mutation p.L199I 0.12 deleterious(0.01) possibly_damaging(0.819) TCGA-CD-5800-01 7 155596246 155596246 T C SHH Missense_Mutation p.D246G 0.17 tolerated(0.23) benign(0.265) TCGA-CD-5800-01 7 157874021 157874021 G A PTPRN2 Silent p.N564N 0.11 TCGA-CD-5800-01 7 21510759 21510759 A T SP4 Intron 0.25 TCGA-CD-5800-01 7 27672037 27672037 C T HIBADH Missense_Mutation p.E94K 0.13 tolerated(0.66) benign(0.097) TCGA-CD-5800-01 7 36194426 36194426 C T EEPD1 Missense_Mutation p.R165C 0.11 deleterious(0) probably_damaging(1) TCGA-CD-5800-01 7 66410149 66410149 A G TMEM248 Missense_Mutation p.I116V 0.13 tolerated(0.05) benign(0.007) TCGA-CD-5800-01 7 81372669 81372669 C T HGF Missense_Mutation p.A289T 0.27 tolerated(0.53) benign(0.017) TCGA-CD-5800-01 7 88423644 88423644 G A C7orf62 Missense_Mutation p.P205S 0.18 deleterious(0.01) possibly_damaging(0.861) TCGA-CD-5800-01 7 944770 944770 T G ADAP1 Missense_Mutation p.N143T 0.13 deleterious(0) benign(0.2) TCGA-CD-5800-01 8 120608161 120608161 C A ENPP2 Missense_Mutation p.V352F 0.04 deleterious(0) benign(0.238) TCGA-CD-5800-01 8 140630698 140630698 G A KCNK9 Missense_Mutation p.R310C 0.14 deleterious(0.03) benign(0.003) TCGA-CD-5800-01 8 55534700 55534700 C T RP1 Silent p.I213I 0.17 TCGA-CD-5800-01 8 55539117 55539117 C T RP1 Missense_Mutation p.A892V 0.10 tolerated(0.14) benign(0.012) TCGA-CD-5800-01 8 61765949 61765949 A G CHD7 Missense_Mutation p.E2222G 0.25 possibly_damaging(0.549) TCGA-CD-5800-01 8 66631645 66631645 G A PDE7A Silent p.H443H 0.13 TCGA-CD-5800-01 8 66989024 66989024 C T DNAJC5B Silent p.Y83Y 0.08 TCGA-CD-5800-01 8 67049353 67049353 C T TRIM55 Silent p.A177A 0.15 TCGA-CD-5800-01 8 72977723 72977723 G A TRPA1 Missense_Mutation p.A172V 0.13 deleterious(0) possibly_damaging(0.833) TCGA-CD-5800-01 8 77765033 77765033 T G ZFHX4 Missense_Mutation p.L1959R 0.07 possibly_damaging(0.883) TCGA-CD-5800-01 8 86171655 86171655 C T CA13 Missense_Mutation p.R81C 0.07 tolerated(0.07) benign(0.003) TCGA-CD-5800-01 8 92352728 92352728 T C SLC26A7 Silent p.A325A 0.12 TCGA-CD-5800-01 9 107289090 107289090 A G OR13C4 Missense_Mutation p.I134T 0.07 deleterious(0.05) benign(0.119) TCGA-CD-5800-01 9 107457263 107457263 C A OR13D1 Silent p.T187T 0.32 TCGA-CD-5800-01 9 136227269 136227269 G A SURF2 Missense_Mutation p.E216K 0.16 benign(0.022) TCGA-CD-5800-01 9 139342536 139342536 C T SEC16A Silent p.S2130S 0.17 TCGA-CD-5800-01 9 38615738 38615738 A C ANKRD18A Missense_Mutation p.C116W 0.30 deleterious(0) probably_damaging(0.995) TCGA-CD-5800-01 X 102755046 102755046 C T RAB40A Silent p.P213P 0.16 TCGA-CD-5800-01 X 120008995 120008995 G A CT47B1 Missense_Mutation p.A177V 0.28 tolerated(0.88) benign(0.071) TCGA-CD-5800-01 X 125299837 125299837 G A DCAF12L2 Missense_Mutation p.S24L 0.39 deleterious_low_confidence(0.05) benign(0.021) TCGA-CD-5800-01 X 136652214 136652214 C A ZIC3 Missense_Mutation p.N463K 0.11 deleterious(0) probably_damaging(0.989) TCGA-CD-5800-01 X 140785585 140785585 A - SPANXD 3'UTR 0.08 TCGA-CD-5800-01 X 153036318 153036318 C T PLXNB3 Missense_Mutation p.R729W 0.22 deleterious(0.04) benign(0.029) TCGA-CD-5800-01 X 18926989 18926989 C G PHKA2 Missense_Mutation p.V764L 0.06 tolerated(0.28) benign(0.077) TCGA-CD-5800-01 X 23953497 23953497 C T CXorf58 Missense_Mutation p.T247M 0.12 deleterious(0) probably_damaging(0.996) TCGA-CD-5800-01 X 50051783 50051783 C T CCNB3 Missense_Mutation p.A205V 0.07 tolerated(0.24) benign(0.012) TCGA-CD-5800-01 X 56259728 56259728 G A KLF8 5'UTR 0.16 TCGA-CD-5800-01 X 65241946 65241946 C A VSIG4 3'UTR 0.27 TCGA-CD-5800-01 X 9905182 9905182 G A SHROOM2 Missense_Mutation p.R1199Q 0.40 deleterious(0.01) probably_damaging(0.953) TCGA-CD-5801-01 10 100995572 100995572 A G HPSE2 5'UTR 0.06 TCGA-CD-5801-01 10 106058933 106058933 A C GSTO2 Missense_Mutation p.K208T 0.07 tolerated(0.31) benign(0.089) TCGA-CD-5801-01 10 114710655 114710655 C T TCF7L2 Missense_Mutation p.S47F 0.20 deleterious(0) probably_damaging(0.999) TCGA-CD-5801-01 10 115804230 115804230 G A ADRB1 Silent p.P113P 0.24 TCGA-CD-5801-01 10 12077149 12077149 C T UPF2 Missense_Mutation p.E92K 0.04 tolerated_low_confidence(0.17) unknown(0) TCGA-CD-5801-01 10 15174868 15174868 T G NMT2 Missense_Mutation p.K223Q 0.19 deleterious(0.02) possibly_damaging(0.756) TCGA-CD-5801-01 10 15639293 15639293 A G ITGA8 Silent p.F708F 0.16 TCGA-CD-5801-01 10 27470425 27470425 A C MASTL Missense_Mutation p.E799D 0.12 tolerated(0.11) probably_damaging(0.999) TCGA-CD-5801-01 10 408454 408454 G A DIP2C Missense_Mutation p.P924S 0.06 deleterious(0.01) possibly_damaging(0.738) TCGA-CD-5801-01 10 50678377 50678377 T G ERCC6 Missense_Mutation p.K1210T 0.09 deleterious(0.01) benign(0.049) TCGA-CD-5801-01 10 61828586 61828586 T C ANK3 Missense_Mutation p.E4018G 0.13 benign(0.003) TCGA-CD-5801-01 10 63440916 63440916 T G C10orf107 5'UTR 0.11 TCGA-CD-5801-01 10 72644971 72644971 T G PCBD1 Silent p.R52R 0.09 TCGA-CD-5801-01 10 85955269 85955269 G A CDHR1 Silent p.P25P 0.20 TCGA-CD-5801-01 10 87628808 87628808 G T GRID1 Missense_Mutation p.L304M 0.05 tolerated(0.11) possibly_damaging(0.583) TCGA-CD-5801-01 10 97440352 97440352 A C TCTN3 Silent p.T489T 0.23 TCGA-CD-5801-01 10 99968636 99968636 A C R3HCC1L Silent p.G255G 0.05 TCGA-CD-5801-01 11 102984309 102984309 A G DYNC2H1 Missense_Mutation p.K80R 0.05 possibly_damaging(0.82) TCGA-CD-5801-01 11 102984404 102984404 G A DYNC2H1 Missense_Mutation p.V112I 0.13 benign(0.042) TCGA-CD-5801-01 11 103814315 103814315 T G PDGFD Missense_Mutation p.K213Q 0.15 deleterious(0.05) benign(0.002) TCGA-CD-5801-01 11 108788778 108788778 T G DDX10 Intron 0.12 TCGA-CD-5801-01 11 110462822 110462822 C T ARHGAP20 Missense_Mutation p.R341Q 0.13 deleterious(0) probably_damaging(0.999) TCGA-CD-5801-01 11 111384173 111384173 A G C11orf88 5'Flank 0.05 TCGA-CD-5801-01 11 112065392 112065392 T G BCO2 Missense_Mutation p.F217C 0.12 deleterious(0) probably_damaging(0.998) TCGA-CD-5801-01 11 114453400 114453400 A G NXPE4 Missense_Mutation p.L147P 0.14 deleterious(0) probably_damaging(1) TCGA-CD-5801-01 11 118981567 118981567 A C C2CD2L Missense_Mutation p.N194T 0.11 tolerated(0.51) benign(0.023) TCGA-CD-5801-01 11 120673464 120673464 A G GRIK4 Missense_Mutation p.K49E 0.12 tolerated(0.08) possibly_damaging(0.706) TCGA-CD-5801-01 11 120916421 120916421 A C TBCEL Missense_Mutation p.S8R 0.09 deleterious(0) possibly_damaging(0.587) TCGA-CD-5801-01 11 12262590 12262590 C T MICAL2 Missense_Mutation p.R740C 0.09 tolerated(0.09) benign(0.001) TCGA-CD-5801-01 11 12345546 12345546 A C MICALCL Silent p.R522R 0.14 TCGA-CD-5801-01 11 125513723 125513723 C T CHEK1 Missense_Mutation p.S284L 0.07 tolerated(0.17) benign(0.034) TCGA-CD-5801-01 11 125864268 125864268 T A CDON Missense_Mutation p.N854I 0.12 deleterious(0) probably_damaging(1) TCGA-CD-5801-01 11 126139191 126139191 A C FOXRED1 Intron 0.05 TCGA-CD-5801-01 11 20473684 20473684 T A PRMT3 Missense_Mutation p.F334L 0.12 possibly_damaging(0.864) TCGA-CD-5801-01 11 22301112 22301112 T G ANO5 Missense_Mutation p.F848C 0.10 deleterious(0.01) probably_damaging(1) TCGA-CD-5801-01 11 32705033 32705033 C A CCDC73 Intron 0.14 TCGA-CD-5801-01 11 35454104 35454104 T G PAMR1 Missense_Mutation p.T672P 0.15 tolerated(0.17) benign(0.207) TCGA-CD-5801-01 11 4928908 4928908 C A OR51A7 Missense_Mutation p.F103L 0.11 deleterious(0.01) possibly_damaging(0.521) TCGA-CD-5801-01 11 5536993 5536993 C A UBQLNL Nonsense_Mutation p.E227* 0.04 TCGA-CD-5801-01 11 56019824 56019824 A C OR5T3 Missense_Mutation p.D50A 0.07 tolerated(0.11) benign(0.044) TCGA-CD-5801-01 11 58480280 58480280 A G GLYAT Missense_Mutation p.L90P 0.11 deleterious(0.02) possibly_damaging(0.739) TCGA-CD-5801-01 11 58723472 58723472 G A GLYATL1 Missense_Mutation p.C325Y 0.10 deleterious(0.05) probably_damaging(0.936) TCGA-CD-5801-01 11 62289401 62289401 A C AHNAK Missense_Mutation p.V4163G 0.11 probably_damaging(0.964) TCGA-CD-5801-01 11 62298592 62298592 T A AHNAK Silent p.P1099P 0.10 TCGA-CD-5801-01 11 62376884 62376884 G A EML3 Missense_Mutation p.R234C 0.12 deleterious(0.02) probably_damaging(0.973) TCGA-CD-5801-01 11 64536752 64536752 T G SF1 Missense_Mutation p.K366T 0.17 deleterious(0) possibly_damaging(0.904) TCGA-CD-5801-01 11 64694201 64694201 C T PPP2R5B Silent p.L73L 0.16 TCGA-CD-5801-01 11 6588890 6588890 T C DNHD1 Missense_Mutation p.C4051R 0.15 benign(0.015) TCGA-CD-5801-01 11 66113606 66113606 C T B3GNT1 Missense_Mutation p.A388T 0.13 tolerated(0.15) benign(0.212) TCGA-CD-5801-01 11 66617526 66617526 C T PC Missense_Mutation p.S927N 0.07 tolerated(0.19) benign(0.001) TCGA-CD-5801-01 11 71249236 71249236 T G KRTAP5-8 Missense_Mutation p.C45W 0.14 deleterious_low_confidence(0) unknown(0) TCGA-CD-5801-01 11 71259851 71259851 C A KRTAP5-9 Missense_Mutation p.P50T 0.16 deleterious_low_confidence(0) unknown(0) TCGA-CD-5801-01 11 71939801 71939801 C T INPPL1 Missense_Mutation p.P143L 0.17 deleterious(0.01) possibly_damaging(0.668) TCGA-CD-5801-01 11 77727862 77727862 T C KCTD14 Missense_Mutation p.Y182C 0.14 tolerated(0.44) benign(0.001) TCGA-CD-5801-01 11 8732693 8732693 C T ST5 Nonsense_Mutation p.W753* 0.18 TCGA-CD-5801-01 11 89073338 89073338 C A NOX4 Missense_Mutation p.D447Y 0.10 deleterious(0.02) probably_damaging(0.992) TCGA-CD-5801-01 11 94906336 94906336 T G SESN3 3'UTR 0.11 TCGA-CD-5801-01 11 96125232 96125232 G A JRKL Silent p.E473E 0.11 TCGA-CD-5801-01 12 101576638 101576638 T C SLC5A8 Missense_Mutation p.K370E 0.10 deleterious(0.01) benign(0.191) TCGA-CD-5801-01 12 102512287 102512287 C T NUP37 Missense_Mutation p.D4N 0.13 tolerated(0.16) benign(0.025) TCGA-CD-5801-01 12 116446774 116446774 T C MED13L Missense_Mutation p.R482G 0.11 deleterious(0) unknown(0) TCGA-CD-5801-01 12 123805055 123805055 T G SBNO1 Missense_Mutation p.K864T 0.15 tolerated(0.38) benign(0.009) TCGA-CD-5801-01 12 125294827 125294827 G A SCARB1 Silent p.F245F 0.18 TCGA-CD-5801-01 12 130647613 130647613 C T FZD10 Silent p.C42C 0.14 TCGA-CD-5801-01 12 13717464 13717464 C T GRIN2B Missense_Mutation p.R903H 0.08 deleterious(0) probably_damaging(0.999) TCGA-CD-5801-01 12 21918912 21918912 G T KCNJ8 Silent p.S340S 0.11 TCGA-CD-5801-01 12 26875410 26875410 C T ITPR2 Missense_Mutation p.V149M 0.13 deleterious(0.01) probably_damaging(0.998) TCGA-CD-5801-01 12 2929369 2929369 A C ITFG2 Missense_Mutation p.K175T 0.16 deleterious(0.03) possibly_damaging(0.69) TCGA-CD-5801-01 12 41966542 41966542 G T PDZRN4 Missense_Mutation p.C654F 0.05 tolerated(0.06) probably_damaging(0.926) TCGA-CD-5801-01 12 55026976 55026976 C T LACRT Missense_Mutation p.E34K 0.14 tolerated_low_confidence(0.06) possibly_damaging(0.486) TCGA-CD-5801-01 12 56530645 56530645 A C ESYT1 Missense_Mutation p.N594H 0.11 deleterious(0.04) possibly_damaging(0.482) TCGA-CD-5801-01 12 56754826 56754826 C T APOF 3'UTR 0.40 TCGA-CD-5801-01 12 57437101 57437101 C A MYO1A Nonsense_Mutation p.E312* 0.15 TCGA-CD-5801-01 12 64061913 64061913 A G DPY19L2 Silent p.N87N 0.15 TCGA-CD-5801-01 12 65460501 65460501 C T WIF1 Missense_Mutation p.R217Q 0.13 tolerated(0.96) benign(0.004) TCGA-CD-5801-01 12 75816695 75816695 C T GLIPR1L2 Missense_Mutation p.T199M 0.09 tolerated(0.05) possibly_damaging(0.743) TCGA-CD-5801-01 12 77423918 77423918 A C E2F7 Missense_Mutation p.L526R 0.16 tolerated(0.36) benign(0.004) TCGA-CD-5801-01 13 20279847 20279847 T A PSPC1 Silent p.G447G 0.10 TCGA-CD-5801-01 13 25157654 25157654 T G RP11-556N21.1 RNA 0.16 TCGA-CD-5801-01 13 35692531 35692531 T C NBEA Silent p.D721D 0.50 TCGA-CD-5801-01 13 36242525 36242525 C T NBEA Silent p.D2873D 0.19 TCGA-CD-5801-01 13 36424796 36424796 G C DCLK1 Intron 0.12 TCGA-CD-5801-01 13 36743069 36743069 T C SOHLH2 3'UTR 0.11 TCGA-CD-5801-01 13 58298873 58298873 A C PCDH17 Silent p.V975V 0.10 TCGA-CD-5801-01 13 67205388 67205388 A G PCDH9 Silent p.S1098S 0.28 TCGA-CD-5801-01 13 88330472 88330472 G A SLITRK5 Silent p.P943P 0.24 TCGA-CD-5801-01 14 101531947 101531947 C T MIR369 RNA 0.11 TCGA-CD-5801-01 14 105419971 105419971 G T AHNAK2 Missense_Mutation p.T606K 0.06 benign(0.017) TCGA-CD-5801-01 14 106053439 106053439 G A IGHA2 Silent p.R286R 0.14 TCGA-CD-5801-01 14 20248901 20248901 C T OR4M1 Silent p.L140L 0.04 TCGA-CD-5801-01 14 21794020 21794020 G A RPGRIP1 Missense_Mutation p.E800K 0.23 deleterious(0.02) possibly_damaging(0.896) TCGA-CD-5801-01 14 22675901 22675901 A C TRAV34 Missense_Mutation p.K71N 0.09 deleterious(0.01) possibly_damaging(0.842) TCGA-CD-5801-01 14 23511989 23511989 C T PSMB11 Silent p.Y185Y 0.14 TCGA-CD-5801-01 14 24727813 24727813 G A TGM1 Missense_Mutation p.T409I 0.13 tolerated(0.2) possibly_damaging(0.843) TCGA-CD-5801-01 14 26949249 26949249 C A NOVA1 Silent p.V127V 0.06 TCGA-CD-5801-01 14 61747020 61747020 G T TMEM30B Silent p.A282A 0.08 TCGA-CD-5801-01 14 65210268 65210268 A G PLEKHG3 Silent p.S1113S 0.13 TCGA-CD-5801-01 14 65264532 65264532 A C SPTB Missense_Mutation p.L366R 0.17 deleterious(0) probably_damaging(0.999) TCGA-CD-5801-01 14 79432563 79432563 G A NRXN3 Missense_Mutation p.G491E 0.13 deleterious(0) probably_damaging(0.997) TCGA-CD-5801-01 14 81864716 81864716 A G STON2 Missense_Mutation p.L4S 0.06 deleterious_low_confidence(0) possibly_damaging(0.888) TCGA-CD-5801-01 14 86089254 86089254 G A FLRT2 Missense_Mutation p.V466I 0.06 tolerated(1) benign(0.01) TCGA-CD-5801-01 14 90650597 90650597 G A KCNK13 Silent p.S159S 0.14 TCGA-CD-5801-01 14 92488050 92488050 G A TRIP11 Silent p.F146F 0.12 TCGA-CD-5801-01 14 94063712 94063712 A C UNC79 Missense_Mutation p.K889N 0.04 deleterious(0) probably_damaging(0.997) TCGA-CD-5801-01 15 25425476 25425476 C T SNORD115-6 5'Flank 0.27 TCGA-CD-5801-01 15 41772842 41772842 C T RTF1 Missense_Mutation p.S697F 0.11 deleterious(0) probably_damaging(0.998) TCGA-CD-5801-01 15 42003309 42003309 A C MGA Missense_Mutation p.N949T 0.07 deleterious(0.01) benign(0.103) TCGA-CD-5801-01 15 48435171 48435171 G T MYEF2 Nonsense_Mutation p.C579* 0.11 TCGA-CD-5801-01 15 54786926 54786926 A C UNC13C Missense_Mutation p.Y1685S 0.04 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CD-5801-01 15 58247240 58247240 T G ALDH1A2 3'UTR 0.09 TCGA-CD-5801-01 15 73029293 73029293 C T BBS4 Missense_Mutation p.T480M 0.10 deleterious_low_confidence(0.02) benign(0.003) TCGA-CD-5801-01 15 78217330 78217331 - T RP11-114H24.7 3'Flank 0.10 TCGA-CD-5801-01 15 83221347 83221347 G A CPEB1 Silent p.F361F 0.13 TCGA-CD-5801-01 15 87531292 87531292 A C AGBL1 Missense_Mutation p.K1053T 0.12 unknown(0) TCGA-CD-5801-01 15 89807862 89807862 A C FANCI Intron 0.10 TCGA-CD-5801-01 15 90244983 90244983 A C WDR93 Silent p.S2S 0.03 TCGA-CD-5801-01 16 11362947 11362947 T A TNP2 Missense_Mutation p.N58I 0.03 tolerated(0.31) possibly_damaging(0.904) TCGA-CD-5801-01 16 1574665 1574665 A C IFT140 Missense_Mutation p.L1010R 0.08 tolerated(0.81) benign(0) TCGA-CD-5801-01 16 19041646 19041646 G T TMC7 Missense_Mutation p.S271I 0.11 deleterious(0.04) benign(0.127) TCGA-CD-5801-01 16 2222327 2222327 A C TRAF7 Missense_Mutation p.E204A 0.20 deleterious(0.05) benign(0.219) TCGA-CD-5801-01 16 27492434 27492434 C T GTF3C1 Missense_Mutation p.E1388K 0.09 tolerated(0.4) possibly_damaging(0.51) TCGA-CD-5801-01 16 29818187 29818187 C T MAZ Silent p.S55S 0.09 TCGA-CD-5801-01 16 30532838 30532840 AGG - ITGAL In_Frame_Del p.E1123del 0.13 TCGA-CD-5801-01 16 4016903 4016903 C T ADCY9 Missense_Mutation p.G979S 0.09 tolerated(0.65) benign(0.051) TCGA-CD-5801-01 16 47143516 47143516 T G NETO2 Missense_Mutation p.K254T 0.08 tolerated(0.08) possibly_damaging(0.588) TCGA-CD-5801-01 16 57983311 57983313 TCT - CNGB1 In_Frame_Del p.E355del 0.11 TCGA-CD-5801-01 16 81641288 81641288 C T CMIP Silent p.V139V 0.12 TCGA-CD-5801-01 16 84797843 84797843 C T USP10 Silent p.I602I 0.17 TCGA-CD-5801-01 16 87369863 87369863 C T FBXO31 Missense_Mutation p.R247Q 0.19 tolerated(0.13) probably_damaging(0.97) TCGA-CD-5801-01 17 10215260 10215260 T C MYH13 Missense_Mutation p.E1500G 0.10 deleterious(0.02) probably_damaging(0.975) TCGA-CD-5801-01 17 1703659 1703659 T A SMYD4 Silent p.T343T 0.15 TCGA-CD-5801-01 17 17394653 17394653 G A MED9 Silent p.Q95Q 0.12 TCGA-CD-5801-01 17 17900913 17900913 C T LRRC48 Missense_Mutation p.R322C 0.15 deleterious(0.02) benign(0.003) TCGA-CD-5801-01 17 20108508 20108508 A C SPECC1 Missense_Mutation p.E382D 0.09 deleterious(0) probably_damaging(0.997) TCGA-CD-5801-01 17 27031404 27031404 T G PROCA1 Missense_Mutation p.T93P 0.14 deleterious(0) possibly_damaging(0.888) TCGA-CD-5801-01 17 3119805 3119805 T C OR1A1 Silent p.A297A 0.22 TCGA-CD-5801-01 17 3343367 3343367 A C SPATA22 3'UTR 0.10 TCGA-CD-5801-01 17 37627139 37627139 T G CDK12 Missense_Mutation p.S352A 0.04 unknown(0) TCGA-CD-5801-01 17 37901697 37901697 T C GRB7 Missense_Mutation p.L395P 0.16 deleterious(0.02) probably_damaging(1) TCGA-CD-5801-01 17 39140420 39140420 C T KRT40 Missense_Mutation p.G36S 0.20 tolerated(0.86) benign(0.001) TCGA-CD-5801-01 17 39296526 39296526 T C KRTAP4-6 Missense_Mutation p.T72A 0.09 tolerated(0.06) unknown(0) TCGA-CD-5801-01 17 39535633 39535633 T C KRT34 Missense_Mutation p.E325G 0.11 deleterious(0) probably_damaging(0.993) TCGA-CD-5801-01 17 41180175 41180175 T A RND2 Missense_Mutation p.L133Q 0.07 deleterious(0) probably_damaging(0.998) TCGA-CD-5801-01 17 42338113 42338113 C T SLC4A1 Missense_Mutation p.R80H 0.07 tolerated(0.2) benign(0.053) TCGA-CD-5801-01 17 42756257 42756257 T G CCDC43 Missense_Mutation p.K214N 0.08 deleterious(0) unknown(0) TCGA-CD-5801-01 17 4534935 4534935 T C ALOX15 Missense_Mutation p.Y650C 0.09 deleterious(0) probably_damaging(1) TCGA-CD-5801-01 17 45896428 45896428 C T OSBPL7 Missense_Mutation p.R98Q 0.05 deleterious(0) probably_damaging(0.997) TCGA-CD-5801-01 17 46607133 46607133 G A HOXB1 Silent p.L228L 0.04 TCGA-CD-5801-01 17 48614290 48614290 G A EPN3 Missense_Mutation p.E125K 0.12 deleterious(0) probably_damaging(1) TCGA-CD-5801-01 17 5308509 5308509 T G NUP88 Missense_Mutation p.E304D 0.12 tolerated(0.12) possibly_damaging(0.791) TCGA-CD-5801-01 17 60741993 60741993 G C MRC2 Missense_Mutation p.C68S 0.06 deleterious(0) probably_damaging(0.999) TCGA-CD-5801-01 17 67212059 67212059 C T ABCA10 Nonsense_Mutation p.W252* 0.09 TCGA-CD-5801-01 17 68129047 68129047 A C KCNJ16 Missense_Mutation p.K273N 0.14 tolerated(0.19) possibly_damaging(0.727) TCGA-CD-5801-01 17 6978394 6978394 C T CLEC10A Silent p.Q310Q 0.08 TCGA-CD-5801-01 17 74005091 74005093 CCT - EVPL In_Frame_Del p.E1398del 0.30 TCGA-CD-5801-01 17 76471395 76471395 T C DNAH17 Missense_Mutation p.T2812A 0.10 benign(0.026) TCGA-CD-5801-01 17 77043792 77043792 G A C1QTNF1 Missense_Mutation p.M156I 0.06 deleterious(0.01) benign(0.026) TCGA-CD-5801-01 17 77043793 77043793 C T C1QTNF1 Missense_Mutation p.H157Y 0.08 deleterious(0) probably_damaging(0.999) TCGA-CD-5801-01 17 78324165 78324165 A T RNF213 Missense_Mutation p.I3385F 0.10 benign(0.004) TCGA-CD-5801-01 18 32707044 32707044 A C MAPRE2 Missense_Mutation p.N248T 0.09 tolerated(0.88) benign(0.002) TCGA-CD-5801-01 18 56587298 56587298 A G ZNF532 Silent p.P593P 0.10 TCGA-CD-5801-01 18 72344603 72344603 T C ZNF407 Missense_Mutation p.L543S 0.13 deleterious(0.02) benign(0.163) TCGA-CD-5801-01 19 10908118 10908118 T C DNM2 Missense_Mutation p.L420P 0.10 deleterious(0) probably_damaging(0.998) TCGA-CD-5801-01 19 11832957 11832957 A G ZNF823 Silent p.T464T 0.12 TCGA-CD-5801-01 19 12246374 12246374 T C ZNF20 Silent p.G47G 0.09 TCGA-CD-5801-01 19 12637395 12637395 T G ZNF564 Missense_Mutation p.Q509H 0.13 tolerated(0.16) benign(0.385) TCGA-CD-5801-01 19 13033608 13033608 C T FARSA Missense_Mutation p.R494H 0.08 deleterious(0) possibly_damaging(0.837) TCGA-CD-5801-01 19 14758024 14758024 T C EMR3 Missense_Mutation p.K284R 0.04 tolerated(0.16) benign(0.002) TCGA-CD-5801-01 19 19625642 19625642 C T TSSK6 Missense_Mutation p.G199S 0.30 deleterious(0) probably_damaging(1) TCGA-CD-5801-01 19 21281033 21281033 G A ZNF714 5'UTR 0.24 TCGA-CD-5801-01 19 21991547 21991547 C T ZNF43 Missense_Mutation p.C431Y 0.04 deleterious(0) probably_damaging(1) TCGA-CD-5801-01 19 22156857 22156857 T C ZNF208 Missense_Mutation p.T327A 0.39 tolerated(0.87) benign(0.017) TCGA-CD-5801-01 19 22270892 22270892 A G ZNF257 Missense_Mutation p.R114G 0.12 deleterious(0.05) benign(0.012) TCGA-CD-5801-01 19 2252554 2252554 T G JSRP1 Missense_Mutation p.K257T 0.13 tolerated(0.08) possibly_damaging(0.859) TCGA-CD-5801-01 19 2337467 2337467 C T SPPL2B RNA 0.22 TCGA-CD-5801-01 19 37642537 37642537 A C ZNF585A Missense_Mutation p.F700C 0.10 deleterious(0) probably_damaging(1) TCGA-CD-5801-01 19 40366468 40366468 A G FCGBP Missense_Mutation p.L4589P 0.16 probably_damaging(0.999) TCGA-CD-5801-01 19 40580508 40580508 T C ZNF780A Missense_Mutation p.E615G 0.09 tolerated(0.06) benign(0.392) TCGA-CD-5801-01 19 4117551 4117551 A C MAP2K2 Missense_Mutation p.F57V 0.10 deleterious(0.01) probably_damaging(0.974) TCGA-CD-5801-01 19 41518644 41518644 C T CYP2B6 Silent p.D406D 0.22 TCGA-CD-5801-01 19 41596320 41596320 G A CYP2A13 Missense_Mutation p.D169N 0.08 tolerated(0.08) benign(0.076) TCGA-CD-5801-01 19 44564948 44564948 A C ZNF223 Missense_Mutation p.E63D 0.11 deleterious(0.02) probably_damaging(0.997) TCGA-CD-5801-01 19 44636097 44636097 G A ZNF225 Missense_Mutation p.D444N 0.09 tolerated(0.34) possibly_damaging(0.854) TCGA-CD-5801-01 19 44833807 44833807 T G ZNF112 Missense_Mutation p.Y174S 0.06 deleterious(0.01) benign(0.043) TCGA-CD-5801-01 19 44981801 44981801 T G ZNF180 Missense_Mutation p.K299N 0.03 tolerated(0.26) benign(0.118) TCGA-CD-5801-01 19 44982338 44982338 T C ZNF180 Silent p.K120K 0.10 TCGA-CD-5801-01 19 46195259 46195259 A C SNRPD2 5'UTR 0.10 TCGA-CD-5801-01 19 46973452 46973452 T G PNMAL1 Missense_Mutation p.S281R 0.05 tolerated(0.26) possibly_damaging(0.504) TCGA-CD-5801-01 19 49447725 49447725 A T DHDH Missense_Mutation p.S286C 0.11 tolerated(0.09) benign(0.006) TCGA-CD-5801-01 19 50881883 50881883 T C NR1H2 Missense_Mutation p.S193P 0.18 tolerated(0.45) benign(0.001) TCGA-CD-5801-01 19 5135478 5135478 G A KDM4B Silent p.E738E 0.15 TCGA-CD-5801-01 19 5244113 5244113 T C PTPRS Missense_Mutation p.I457V 0.11 tolerated(0.33) benign(0.026) TCGA-CD-5801-01 19 52888022 52888022 A G ZNF880 Missense_Mutation p.N397D 0.05 tolerated(0.44) benign(0.006) TCGA-CD-5801-01 19 53057134 53057134 A C ZNF808 Missense_Mutation p.K322T 0.11 deleterious(0.02) probably_damaging(0.997) TCGA-CD-5801-01 19 53571418 53571418 T G ZNF160 Missense_Mutation p.K790T 0.10 deleterious(0.04) possibly_damaging(0.605) TCGA-CD-5801-01 19 53741755 53741755 C A ZNF677 Missense_Mutation p.E75D 0.13 tolerated(0.09) benign(0.021) TCGA-CD-5801-01 19 54627955 54627955 C T PRPF31 Silent p.L259L 0.07 TCGA-CD-5801-01 19 55349282 55349282 C A KIR2DS4 Missense_Mutation p.P108T 0.07 deleterious_low_confidence(0) possibly_damaging(0.903) TCGA-CD-5801-01 19 55813018 55813018 A C BRSK1 Silent p.R273R 0.15 TCGA-CD-5801-01 19 56243492 56243492 A C NLRP9 Missense_Mutation p.F569V 0.04 tolerated(0.51) benign(0.019) TCGA-CD-5801-01 19 58152729 58152729 A G ZNF211 Missense_Mutation p.K357R 0.11 tolerated(0.08) benign(0.088) TCGA-CD-5801-01 19 8196690 8196690 C T FBN3 Missense_Mutation p.G580S 0.20 tolerated(0.08) probably_damaging(0.99) TCGA-CD-5801-01 19 9048508 9048508 C T MUC16 Silent p.V11041V 0.08 TCGA-CD-5801-01 19 9069337 9069337 C T MUC16 Missense_Mutation p.G6037R 0.11 unknown(0) TCGA-CD-5801-01 19 9076788 9076788 G A MUC16 Missense_Mutation p.T3553I 0.05 unknown(0) TCGA-CD-5801-01 19 9086693 9086693 T G MUC16 Missense_Mutation p.T1708P 0.09 unknown(0) TCGA-CD-5801-01 19 9090185 9090185 T C MUC16 Missense_Mutation p.K544E 0.04 unknown(0) TCGA-CD-5801-01 19 9577597 9577597 T G ZNF560 Missense_Mutation p.K676Q 0.10 tolerated(0.08) possibly_damaging(0.788) TCGA-CD-5801-01 19 9868802 9868802 T C ZNF846 Silent p.K317K 0.11 TCGA-CD-5801-01 19 9967528 9967528 G A OLFM2 Silent p.F214F 0.10 TCGA-CD-5801-01 1 100155463 100155463 A C PALMD Intron 0.12 TCGA-CD-5801-01 1 104115765 104115765 T G AMY2B Missense_Mutation p.S132R 0.11 deleterious(0) possibly_damaging(0.906) TCGA-CD-5801-01 1 104117951 104117951 A G AMY2B Missense_Mutation p.T329A 0.02 deleterious(0) probably_damaging(0.965) TCGA-CD-5801-01 1 109394496 109394496 A C AKNAD1 Missense_Mutation p.I264S 0.15 deleterious(0) benign(0.108) TCGA-CD-5801-01 1 113655213 113655213 A T LRIG2 Missense_Mutation p.K637N 0.08 deleterious(0) probably_damaging(0.982) TCGA-CD-5801-01 1 117656011 117656011 C T TRIM45 Missense_Mutation p.A522T 0.06 deleterious(0.02) benign(0.133) TCGA-CD-5801-01 1 12091346 12091346 T G MIIP Missense_Mutation p.I322M 0.10 deleterious(0.05) probably_damaging(0.959) TCGA-CD-5801-01 1 12338075 12338075 A C VPS13D Missense_Mutation p.E1477A 0.13 benign(0.001) TCGA-CD-5801-01 1 12942969 12942969 C A PRAMEF4 Missense_Mutation p.V83L 0.13 tolerated(0.06) benign(0.145) TCGA-CD-5801-01 1 150936034 150936034 A T SETDB1 Missense_Mutation p.K1162N 0.04 deleterious(0) probably_damaging(0.998) TCGA-CD-5801-01 1 151378288 151378288 A C POGZ Missense_Mutation p.F1075V 0.09 deleterious(0) probably_damaging(0.996) TCGA-CD-5801-01 1 152286342 152286342 A C FLG Missense_Mutation p.D340E 0.13 possibly_damaging(0.495) TCGA-CD-5801-01 1 154574777 154574777 C T ADAR Missense_Mutation p.R114H 0.15 tolerated(0.24) benign(0.001) TCGA-CD-5801-01 1 154919262 154919262 A C PBXIP1 Silent p.L296L 0.12 TCGA-CD-5801-01 1 156374397 156374397 A C C1orf61 Intron 0.05 TCGA-CD-5801-01 1 158576882 158576882 C T OR10Z1 Silent p.Y218Y 0.10 TCGA-CD-5801-01 1 158614075 158614075 G A SPTA1 Missense_Mutation p.R1436W 0.07 deleterious(0) probably_damaging(0.937) TCGA-CD-5801-01 1 160924559 160924559 C A ITLN2 5'UTR 0.14 TCGA-CD-5801-01 1 161968040 161968040 G T OLFML2B Missense_Mutation p.A350E 0.14 tolerated(0.76) benign(0.041) TCGA-CD-5801-01 1 162749899 162749899 A C DDR2 Intron 0.09 TCGA-CD-5801-01 1 167096038 167096038 A T DUSP27 Missense_Mutation p.H557L 0.08 deleterious(0) probably_damaging(0.983) TCGA-CD-5801-01 1 169694904 169694904 T C SELE Missense_Mutation p.K605R 0.10 tolerated(0.61) benign(0.065) TCGA-CD-5801-01 1 169822715 169822715 C T C1orf112 3'UTR 0.07 TCGA-CD-5801-01 1 171755119 171755119 T C METTL13 Silent p.L338L 0.13 TCGA-CD-5801-01 1 173570870 173570870 A C SLC9C2 Missense_Mutation p.L16V 0.14 tolerated_low_confidence(0.07) benign(0.139) TCGA-CD-5801-01 1 175054550 175054550 C T TNN Missense_Mutation p.P415L 0.15 tolerated(0.06) probably_damaging(1) TCGA-CD-5801-01 1 180022921 180022921 T G CEP350 Missense_Mutation p.F1676V 0.10 probably_damaging(0.999) TCGA-CD-5801-01 1 197086984 197086984 T G ASPM Missense_Mutation p.K1334Q 0.03 tolerated(0.15) possibly_damaging(0.588) TCGA-CD-5801-01 1 200816802 200816802 T G CAMSAP2 Silent p.V409V 0.13 TCGA-CD-5801-01 1 201386922 201386922 G A TNNI1 5'UTR 0.10 TCGA-CD-5801-01 1 203317106 203317106 T G FMOD Missense_Mutation p.K98T 0.09 tolerated(0.32) benign(0.068) TCGA-CD-5801-01 1 209950798 209950798 A G TRAF3IP3 Silent p.R385R 0.05 TCGA-CD-5801-01 1 20998458 20998458 C T KIF17 Missense_Mutation p.V899I 0.23 tolerated(0.66) benign(0.003) TCGA-CD-5801-01 1 213147373 213147373 A T VASH2 Missense_Mutation p.Q275L 0.13 tolerated(0.14) benign(0.001) TCGA-CD-5801-01 1 214815833 214815833 G A CENPF Silent p.L1384L 0.16 TCGA-CD-5801-01 1 226553738 226553738 A T PARP1 Missense_Mutation p.S808T 0.07 tolerated(0.13) benign(0.051) TCGA-CD-5801-01 1 230979513 230979513 T C C1orf198 Missense_Mutation p.R172G 0.12 deleterious(0) benign(0.397) TCGA-CD-5801-01 1 232564266 232564266 T A SIPA1L2 Missense_Mutation p.Q1434L 0.14 tolerated(0.05) benign(0.099) TCGA-CD-5801-01 1 237730077 237730077 T C RYR2 Splice_Site p.X1141_splice 0.04 TCGA-CD-5801-01 1 237806673 237806673 T C RYR2 Missense_Mutation p.L2423S 0.12 probably_damaging(0.999) TCGA-CD-5801-01 1 237995974 237995974 C A RYR2 3'UTR 0.09 TCGA-CD-5801-01 1 245246923 245246923 G T EFCAB2 Splice_Site p.X103_splice 0.12 TCGA-CD-5801-01 1 29069898 29069898 A C YTHDF2 Silent p.G372G 0.15 TCGA-CD-5801-01 1 32828289 32828289 C T TSSK3 5'UTR 0.20 TCGA-CD-5801-01 1 33988919 33988919 A C CSMD2 Silent p.A3355A 0.09 TCGA-CD-5801-01 1 3553603 3553603 C T WRAP73 Missense_Mutation p.D158N 0.15 deleterious(0) probably_damaging(0.977) TCGA-CD-5801-01 1 36888482 36888482 T C OSCP1 Silent p.K212K 0.06 TCGA-CD-5801-01 1 39798125 39798125 C T MACF1 Intron 0.15 TCGA-CD-5801-01 1 46511630 46511630 G A PIK3R3 Missense_Mutation p.R383C 0.11 deleterious(0.01) probably_damaging(1) TCGA-CD-5801-01 1 65146982 65146982 G A CACHD1 Missense_Mutation p.E1099K 0.10 deleterious(0.03) benign(0.04) TCGA-CD-5801-01 1 6631246 6631246 G A TAS1R1 Missense_Mutation p.A157T 0.11 tolerated(0.13) possibly_damaging(0.532) TCGA-CD-5801-01 1 70555444 70555444 G A LRRC7 Missense_Mutation p.G1458E 0.08 deleterious(0) probably_damaging(0.985) TCGA-CD-5801-01 1 85546958 85546958 C A WDR63 Missense_Mutation p.Q49K 0.08 deleterious(0) probably_damaging(1) TCGA-CD-5801-01 1 86487966 86487966 C G COL24A1 Missense_Mutation p.G738A 0.13 deleterious(0) probably_damaging(1) TCGA-CD-5801-01 1 90178825 90178825 A T LRRC8C Missense_Mutation p.K232N 0.17 deleterious(0.01) possibly_damaging(0.82) TCGA-CD-5801-01 1 92442816 92442816 A G BRDT Missense_Mutation p.I279V 0.09 deleterious(0.03) possibly_damaging(0.63) TCGA-CD-5801-01 1 9415870 9415870 C T SPSB1 5'UTR 0.22 TCGA-CD-5801-01 20 10035216 10035216 A G ANKEF1 Missense_Mutation p.K714R 0.04 tolerated(0.08) probably_damaging(0.939) TCGA-CD-5801-01 20 19998682 19998682 C T NAA20 Intron 0.11 TCGA-CD-5801-01 20 20056254 20056254 A G C20orf26 Silent p.K187K 0.22 TCGA-CD-5801-01 20 210029 210029 C A DEFB129 Missense_Mutation p.P57T 0.04 deleterious(0.01) possibly_damaging(0.731) TCGA-CD-5801-01 20 21494272 21494272 G A NKX2-2 Silent p.V12V 0.16 TCGA-CD-5801-01 20 2315813 2315813 A G TGM3 Missense_Mutation p.K565R 0.10 deleterious(0.04) possibly_damaging(0.837) TCGA-CD-5801-01 20 24523780 24523780 T C SYNDIG1 Missense_Mutation p.I16T 0.12 tolerated_low_confidence(0.13) benign(0.05) TCGA-CD-5801-01 20 30674564 30674564 G A HCK Silent p.V323V 0.22 TCGA-CD-5801-01 20 32660008 32660008 C T RALY Missense_Mutation p.S43F 0.17 deleterious(0.01) benign(0.363) TCGA-CD-5801-01 20 34571996 34571996 A C CNBD2 Missense_Mutation p.E167A 0.17 deleterious(0.03) possibly_damaging(0.627) TCGA-CD-5801-01 20 39990482 39990482 G A EMILIN3 Missense_Mutation p.T576M 0.07 deleterious(0.03) benign(0.052) TCGA-CD-5801-01 20 44236651 44236651 A C WFDC9 3'UTR 0.12 TCGA-CD-5801-01 20 44511188 44511188 A C ZSWIM1 5'UTR 0.20 TCGA-CD-5801-01 20 49509420 49509420 C T ADNP Missense_Mutation p.A611T 0.02 tolerated(0.81) benign(0.01) TCGA-CD-5801-01 20 54824097 54824097 C T MC3R Silent p.N66N 0.10 TCGA-CD-5801-01 20 55012519 55012519 T G CASS4 Silent p.V112V 0.03 TCGA-CD-5801-01 20 5559187 5559187 T G GPCPD1 Missense_Mutation p.M182L 0.04 tolerated(0.36) benign(0.003) TCGA-CD-5801-01 20 58559774 58559774 T C CDH26 Missense_Mutation p.S208P 0.11 deleterious(0.04) probably_damaging(0.994) TCGA-CD-5801-01 20 58559811 58559811 T G CDH26 Missense_Mutation p.V220G 0.12 deleterious(0) possibly_damaging(0.735) TCGA-CD-5801-01 20 60587991 60587991 C T TAF4 Splice_Site p.X508_splice 0.24 TCGA-CD-5801-01 20 61485451 61485451 C T TCFL5 Missense_Mutation p.E433K 0.09 tolerated(0.13) probably_damaging(0.998) TCGA-CD-5801-01 20 61513128 61513128 C T DIDO1 Missense_Mutation p.E1394K 0.12 possibly_damaging(0.524) TCGA-CD-5801-01 21 31027143 31027143 A C GRIK1 Missense_Mutation p.F256C 0.09 deleterious(0.01) probably_damaging(0.956) TCGA-CD-5801-01 21 39795341 39795341 C T ERG Missense_Mutation p.V134M 0.10 deleterious(0) probably_damaging(0.997) TCGA-CD-5801-01 21 42647325 42647325 T G BACE2 Missense_Mutation p.I444S 0.16 deleterious(0.05) benign(0.37) TCGA-CD-5801-01 21 47536587 47536587 G A COL6A2 Missense_Mutation p.R317H 0.26 tolerated(0.14) probably_damaging(0.997) TCGA-CD-5801-01 21 47546039 47546039 A C COL6A2 Missense_Mutation p.E770D 0.03 tolerated(0.09) benign(0.396) TCGA-CD-5801-01 22 26423450 26423450 C T MYO18B Missense_Mutation p.H2504Y 0.07 deleterious(0.01) possibly_damaging(0.742) TCGA-CD-5801-01 22 37334549 37334549 C T CSF2RB 3'UTR 0.25 TCGA-CD-5801-01 22 38120199 38120199 C T TRIOBP Nonsense_Mutation p.R546* 0.07 TCGA-CD-5801-01 22 42054327 42054327 T G XRCC6 Missense_Mutation p.M498R 0.24 tolerated(0.64) benign(0.228) TCGA-CD-5801-01 22 50941834 50941834 G A LMF2 Missense_Mutation p.R704W 0.07 deleterious(0.02) possibly_damaging(0.451) TCGA-CD-5801-01 2 10074061 10074061 A C TAF1B Missense_Mutation p.K572T 0.14 deleterious(0.01) unknown(0) TCGA-CD-5801-01 2 103281748 103281748 T G SLC9A2 Missense_Mutation p.F315V 0.08 deleterious(0) probably_damaging(0.999) TCGA-CD-5801-01 2 108476224 108476224 A C RGPD4 Missense_Mutation p.N561H 0.07 deleterious(0.04) benign(0) TCGA-CD-5801-01 2 109371385 109371385 A C RANBP2 Missense_Mutation p.K743Q 0.10 tolerated(0.08) benign(0.033) TCGA-CD-5801-01 2 138033526 138033526 A G THSD7B Silent p.L810L 0.07 TCGA-CD-5801-01 2 141032079 141032079 T A LRP1B Missense_Mutation p.E4352D 0.10 benign(0.217) TCGA-CD-5801-01 2 141128301 141128301 A G LRP1B Silent p.S3662S 0.08 TCGA-CD-5801-01 2 1507813 1507813 A T TPO Missense_Mutation p.D827V 0.18 deleterious(0) probably_damaging(0.997) TCGA-CD-5801-01 2 152319680 152319680 A T RIF1 Missense_Mutation p.S1216C 0.03 deleterious(0) probably_damaging(0.977) TCGA-CD-5801-01 2 152573961 152573961 A C NEB Missense_Mutation p.F264C 0.06 probably_damaging(0.962) TCGA-CD-5801-01 2 159517979 159517979 T G PKP4 Intron 0.03 TCGA-CD-5801-01 2 165796034 165796034 A C SLC38A11 Missense_Mutation p.F99V 0.10 tolerated(0.19) benign(0.072) TCGA-CD-5801-01 2 166451672 166451672 A C CSRNP3 Missense_Mutation p.S33R 0.16 deleterious(0.02) probably_damaging(0.991) TCGA-CD-5801-01 2 168099931 168099931 G A XIRP2 Missense_Mutation p.A677T 0.17 benign(0.013) TCGA-CD-5801-01 2 168725733 168725733 T G B3GALT1 Missense_Mutation p.S62A 0.17 tolerated(0.15) benign(0.002) TCGA-CD-5801-01 2 170592685 170592685 G C KLHL23 Missense_Mutation p.E387D 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-CD-5801-01 2 171073866 171073866 A G MYO3B Silent p.R188R 0.11 TCGA-CD-5801-01 2 179490044 179490044 A C TTN Missense_Mutation p.L14835R 0.09 TCGA-CD-5801-01 2 179545862 179545863 - T TTN Frame_Shift_Ins p.I11095Nfs*9 0.11 TCGA-CD-5801-01 2 179592845 179592845 G T TTN Missense_Mutation p.T6569N 0.21 TCGA-CD-5801-01 2 179598199 179598199 G A TTN Missense_Mutation p.A5274V 0.09 TCGA-CD-5801-01 2 179642153 179642153 C T TTN Missense_Mutation p.V1547M 0.08 TCGA-CD-5801-01 2 190541514 190541514 G A ANKAR Missense_Mutation p.V100I 0.03 tolerated(0.25) benign(0.206) TCGA-CD-5801-01 2 192700540 192700540 G T SDPR 3'UTR 0.22 TCGA-CD-5801-01 2 196682507 196682507 T G DNAH7 Missense_Mutation p.Q3113P 0.09 deleterious(0) probably_damaging(0.999) TCGA-CD-5801-01 2 196729698 196729698 G T DNAH7 Missense_Mutation p.S2227R 0.17 tolerated(0.19) benign(0.001) TCGA-CD-5801-01 2 197183343 197183343 T G HECW2 Missense_Mutation p.E757D 0.17 tolerated_low_confidence(0.44) benign(0.001) TCGA-CD-5801-01 2 201434462 201434462 A C SGOL2 Missense_Mutation p.T184P 0.13 tolerated(0.09) possibly_damaging(0.807) TCGA-CD-5801-01 2 201437583 201437583 A C SGOL2 Missense_Mutation p.K838N 0.10 tolerated(0.11) benign(0.066) TCGA-CD-5801-01 2 210574811 210574811 A G MAP2 Missense_Mutation p.I1636V 0.03 deleterious(0.02) possibly_damaging(0.689) TCGA-CD-5801-01 2 211019060 211019060 T G KANSL1L Missense_Mutation p.M83L 0.09 tolerated(0.09) probably_damaging(0.966) TCGA-CD-5801-01 2 211540529 211540529 A G CPS1 Silent p.Q1419Q 0.11 TCGA-CD-5801-01 2 21225959 21225959 G T APOB Missense_Mutation p.A4112D 0.09 probably_damaging(0.997) TCGA-CD-5801-01 2 21233884 21233884 A T APOB Missense_Mutation p.H1952Q 0.04 probably_damaging(0.991) TCGA-CD-5801-01 2 21234742 21234742 C T APOB Silent p.V1666V 0.05 TCGA-CD-5801-01 2 212566700 212566700 T C ERBB4 Missense_Mutation p.E494G 0.11 tolerated(0.08) benign(0.158) TCGA-CD-5801-01 2 215840618 215840618 C T ABCA12 Missense_Mutation p.V1758I 0.08 deleterious(0.04) probably_damaging(0.923) TCGA-CD-5801-01 2 217001884 217001884 C T XRCC5 Missense_Mutation p.A396V 0.10 tolerated(0.52) benign(0.009) TCGA-CD-5801-01 2 219341575 219341575 T C USP37 Silent p.E677E 0.13 TCGA-CD-5801-01 2 224866577 224866577 G A SERPINE2 Missense_Mutation p.T26M 0.08 tolerated(0.07) possibly_damaging(0.84) TCGA-CD-5801-01 2 228769686 228769686 A C DAW1 Silent p.S230S 0.09 TCGA-CD-5801-01 2 230902235 230902235 T G SLC16A14 Missense_Mutation p.D465A 0.06 deleterious(0) probably_damaging(0.92) TCGA-CD-5801-01 2 238289663 238289663 C T COL6A3 Missense_Mutation p.D598N 0.12 probably_damaging(0.982) TCGA-CD-5801-01 2 242105831 242105831 A C PPP1R7 Missense_Mutation p.E265A 0.11 tolerated(0.05) benign(0.11) TCGA-CD-5801-01 2 24523025 24523025 T G ITSN2 Missense_Mutation p.K366T 0.09 deleterious(0) probably_damaging(0.991) TCGA-CD-5801-01 2 32476658 32476658 T A NLRC4 Missense_Mutation p.Q92L 0.08 tolerated(0.1) benign(0.319) TCGA-CD-5801-01 2 32526534 32526534 A G YIPF4 Silent p.G189G 0.08 TCGA-CD-5801-01 2 32678936 32678936 T C BIRC6 Missense_Mutation p.L1560P 0.08 probably_damaging(0.997) TCGA-CD-5801-01 2 32855667 32855667 T C TTC27 Missense_Mutation p.F56L 0.04 tolerated(1) benign(0.002) TCGA-CD-5801-01 2 43924480 43924480 G A PLEKHH2 Missense_Mutation p.G225R 0.10 deleterious(0.05) benign(0.001) TCGA-CD-5801-01 2 44549015 44549015 A T PREPL Missense_Mutation p.L682Q 0.03 deleterious(0) probably_damaging(1) TCGA-CD-5801-01 2 54872493 54872493 A C SPTBN1 Missense_Mutation p.K1466T 0.09 deleterious(0.03) benign(0.052) TCGA-CD-5801-01 2 61145345 61145345 A C REL Missense_Mutation p.E185D 0.10 deleterious(0.03) probably_damaging(0.948) TCGA-CD-5801-01 2 74781908 74781908 G A DOK1 Silent p.P9P 0.12 TCGA-CD-5801-01 2 75104388 75104388 T G HK2 Missense_Mutation p.L324R 0.02 tolerated(0.34) possibly_damaging(0.833) TCGA-CD-5801-01 2 84800663 84800663 A - DNAH6 Frame_Shift_Del p.K626Rfs*36 0.09 TCGA-CD-5801-01 2 97363787 97363787 A C FER1L5 RNA 0.19 TCGA-CD-5801-01 3 101371354 101371354 A C ZBTB11 Missense_Mutation p.M877R 0.12 deleterious(0) probably_damaging(0.95) TCGA-CD-5801-01 3 105243281 105243281 A C ALCAM Missense_Mutation p.E108A 0.14 deleterious(0.01) benign(0.297) TCGA-CD-5801-01 3 107881466 107881466 A G IFT57 Missense_Mutation p.L383P 0.12 deleterious(0) probably_damaging(0.999) TCGA-CD-5801-01 3 108118049 108118049 A T MYH15 Missense_Mutation p.I1621N 0.10 tolerated(1) possibly_damaging(0.875) TCGA-CD-5801-01 3 10861460 10861460 C T SLC6A11 Missense_Mutation p.A152V 0.17 tolerated(0.05) probably_damaging(0.998) TCGA-CD-5801-01 3 113652477 113652477 T G GRAMD1C Silent p.S443S 0.12 TCGA-CD-5801-01 3 113672689 113672689 T G ZDHHC23 Missense_Mutation p.F102V 0.13 tolerated(0.09) benign(0.066) TCGA-CD-5801-01 3 122264287 122264287 T G PARP9 Missense_Mutation p.N494T 0.14 tolerated(0.17) benign(0.01) TCGA-CD-5801-01 3 122591434 122591434 T G DIRC2 Missense_Mutation p.F437L 0.10 tolerated(0.33) benign(0.009) TCGA-CD-5801-01 3 134343930 134343930 G T KY Missense_Mutation p.Q150K 0.15 tolerated(0.66) benign(0.001) TCGA-CD-5801-01 3 136162135 136162135 C T STAG1 Missense_Mutation p.E514K 0.04 deleterious(0.01) benign(0.235) TCGA-CD-5801-01 3 137786411 137786411 G A DZIP1L Missense_Mutation p.T655I 0.13 tolerated(0.26) possibly_damaging(0.851) TCGA-CD-5801-01 3 140275381 140275381 C T CLSTN2 Silent p.I567I 0.10 TCGA-CD-5801-01 3 151155183 151155183 A G IGSF10 Missense_Mutation p.L2389P 0.12 tolerated(0.07) benign(0.403) TCGA-CD-5801-01 3 156170727 156170727 T C KCNAB1 Splice_Site p.X119_splice 0.06 TCGA-CD-5801-01 3 157818055 157818055 G C SHOX2 Missense_Mutation p.Q225E 0.16 deleterious(0.02) benign(0.237) TCGA-CD-5801-01 3 178921553 178921553 T A PIK3CA Missense_Mutation p.N345K 0.14 deleterious(0.01) probably_damaging(1) TCGA-CD-5801-01 3 179426569 179426569 A T USP13 Missense_Mutation p.K210M 0.06 deleterious(0) possibly_damaging(0.903) TCGA-CD-5801-01 3 183861999 183861999 T C EIF2B5 Missense_Mutation p.I661T 0.12 tolerated(0.89) benign(0.001) TCGA-CD-5801-01 3 184023845 184023845 A C PSMD2 Missense_Mutation p.K569T 0.11 tolerated(0.09) possibly_damaging(0.754) TCGA-CD-5801-01 3 184700383 184700383 G A VPS8 Missense_Mutation p.M1150I 0.17 tolerated(0.28) benign(0.002) TCGA-CD-5801-01 3 185191526 185191526 C T MAP3K13 Nonsense_Mutation p.R803* 0.10 TCGA-CD-5801-01 3 19492867 19492867 T G KCNH8 Missense_Mutation p.L599R 0.17 deleterious(0.01) probably_damaging(0.995) TCGA-CD-5801-01 3 197678096 197678098 TCT - RPL35A In_Frame_Del p.L28del 0.12 TCGA-CD-5801-01 3 32525568 32525568 A C CMTM6 Missense_Mutation p.F146V 0.08 tolerated(0.82) benign(0.071) TCGA-CD-5801-01 3 36869683 36869683 T C TRANK1 3'UTR 0.25 TCGA-CD-5801-01 3 37368800 37368800 A G GOLGA4 Missense_Mutation p.Y1830C 0.07 benign(0.012) TCGA-CD-5801-01 3 37574896 37574896 G T ITGA9 Missense_Mutation p.V489L 0.23 tolerated(0.34) benign(0.019) TCGA-CD-5801-01 3 38950547 38950547 T A SCN11A Missense_Mutation p.I414L 0.03 deleterious(0.04) benign(0.023) TCGA-CD-5801-01 3 40299746 40299746 T G MYRIP 3'UTR 0.16 TCGA-CD-5801-01 3 447378 447378 T A CHL1 Missense_Mutation p.F1220Y 0.11 tolerated_low_confidence(0.13) probably_damaging(0.998) TCGA-CD-5801-01 3 48336623 48336623 T C NME6 Silent p.P120P 0.16 TCGA-CD-5801-01 3 52620667 52620667 T A PBRM1 Missense_Mutation p.E1029V 0.14 deleterious(0) possibly_damaging(0.607) TCGA-CD-5801-01 3 57131970 57131970 A C IL17RD Silent p.V587V 0.15 TCGA-CD-5801-01 3 8543665 8543665 A T LMCD1 Missense_Mutation p.K14M 0.10 deleterious(0) possibly_damaging(0.681) TCGA-CD-5801-01 3 89498524 89498524 T C EPHA3 Silent p.D832D 0.17 TCGA-CD-5801-01 3 9055164 9055164 A C SRGAP3 Missense_Mutation p.F659V 0.22 deleterious(0) probably_damaging(0.995) TCGA-CD-5801-01 3 93596037 93596037 T A PROS1 Splice_Site p.X549_splice 0.06 TCGA-CD-5801-01 3 97516986 97516986 A C ARL6 3'UTR 0.12 TCGA-CD-5801-01 3 97852429 97852429 A T OR5H1 Missense_Mutation p.Q296H 0.10 deleterious(0) possibly_damaging(0.764) TCGA-CD-5801-01 4 104511116 104511116 C T TACR3 Missense_Mutation p.C374Y 0.14 deleterious(0.02) probably_damaging(0.978) TCGA-CD-5801-01 4 106320269 106320269 A C PPA2 Missense_Mutation p.N236K 0.14 deleterious(0.01) possibly_damaging(0.524) TCGA-CD-5801-01 4 107016730 107016730 T A TBCK Missense_Mutation p.E827V 0.14 tolerated(0.08) benign(0.063) TCGA-CD-5801-01 4 114279513 114279513 T C ANK2 Missense_Mutation p.S3247P 0.16 benign(0.012) TCGA-CD-5801-01 4 114302620 114302620 A T ANK2 Missense_Mutation p.N3956I 0.11 possibly_damaging(0.628) TCGA-CD-5801-01 4 120107204 120107204 C T MYOZ2 Missense_Mutation p.T215I 0.10 tolerated(0.11) benign(0.034) TCGA-CD-5801-01 4 142949869 142949869 A C INPP4B 3'UTR 0.13 TCGA-CD-5801-01 4 152638205 152638205 G A PET112 Nonsense_Mutation p.Q155* 0.09 TCGA-CD-5801-01 4 156841122 156841122 A G TDO2 Missense_Mutation p.S401G 0.05 tolerated(0.08) possibly_damaging(0.53) TCGA-CD-5801-01 4 185593465 185593465 A C PRIMPOL Missense_Mutation p.K232T 0.14 benign(0.007) TCGA-CD-5801-01 4 2077220 2077220 A G POLN Missense_Mutation p.L805P 0.15 deleterious(0) probably_damaging(1) TCGA-CD-5801-01 4 48490855 48490855 T C SLC10A4 Missense_Mutation p.S405P 0.06 deleterious(0.03) probably_damaging(0.925) TCGA-CD-5801-01 4 6082037 6082037 T C JAKMIP1 Silent p.K368K 0.12 TCGA-CD-5801-01 4 69964267 69964267 C T UGT2B7 Missense_Mutation p.T244I 0.10 deleterious(0.03) benign(0.222) TCGA-CD-5801-01 4 69973826 69973826 C T UGT2B7 Missense_Mutation p.P366S 0.12 deleterious(0.01) benign(0.365) TCGA-CD-5801-01 4 71495203 71495203 A C ENAM 5'UTR 0.03 TCGA-CD-5801-01 4 74019707 74019707 C T ANKRD17 Missense_Mutation p.G375E 0.11 probably_damaging(0.99) TCGA-CD-5801-01 4 76846936 76846936 G A NAAA Silent p.I206I 0.06 TCGA-CD-5801-01 4 77053844 77053844 G A NUP54 Missense_Mutation p.R247C 0.16 deleterious(0.05) benign(0.168) TCGA-CD-5801-01 4 83774845 83774845 T A SEC31A Missense_Mutation p.N678Y 0.15 deleterious(0.02) benign(0.389) TCGA-CD-5801-01 4 87684297 87684297 A T PTPN13 Missense_Mutation p.D1324V 0.13 deleterious(0) probably_damaging(0.976) TCGA-CD-5801-01 5 102494226 102494226 A G PPIP5K2 Missense_Mutation p.I562M 0.12 deleterious(0.02) possibly_damaging(0.746) TCGA-CD-5801-01 5 13769199 13769199 T G DNAH5 Missense_Mutation p.K3256T 0.07 benign(0.011) TCGA-CD-5801-01 5 139060445 139060445 T A CXXC5 Missense_Mutation p.S113T 0.10 tolerated(0.54) benign(0.001) TCGA-CD-5801-01 5 140865158 140865158 T G PCDHGC4 Missense_Mutation p.L140V 0.18 tolerated(0.1) possibly_damaging(0.557) TCGA-CD-5801-01 5 142661596 142661596 T G NR3C1 Missense_Mutation p.N732T 0.06 tolerated(0.09) benign(0.012) TCGA-CD-5801-01 5 167841353 167841353 G A WWC1 Silent p.R314R 0.35 TCGA-CD-5801-01 5 23526783 23526783 G A PRDM9 Missense_Mutation p.C529Y 0.09 deleterious(0.04) probably_damaging(0.998) TCGA-CD-5801-01 5 31323417 31323417 C T CDH6 3'UTR 0.06 TCGA-CD-5801-01 5 32077580 32077580 A C PDZD2 Missense_Mutation p.K1184Q 0.06 tolerated(0.06) benign(0.09) TCGA-CD-5801-01 5 33616123 33616123 T C ADAMTS12 Missense_Mutation p.E733G 0.35 deleterious(0) probably_damaging(0.99) TCGA-CD-5801-01 5 33891900 33891900 A C ADAMTS12 Missense_Mutation p.F21C 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.491) TCGA-CD-5801-01 5 35654723 35654723 A G SPEF2 Silent p.K291K 0.08 TCGA-CD-5801-01 5 35965721 35965721 A T UGT3A1 Missense_Mutation p.F204I 0.07 tolerated(0.24) benign(0.103) TCGA-CD-5801-01 5 3599747 3599747 G A IRX1 Missense_Mutation p.D229N 0.08 deleterious(0.02) probably_damaging(0.959) TCGA-CD-5801-01 5 36066860 36066860 C T UGT3A2 Missense_Mutation p.G11D 0.12 tolerated(0.22) possibly_damaging(0.478) TCGA-CD-5801-01 5 37108536 37108536 T C C5orf42 Silent p.K3092K 0.05 TCGA-CD-5801-01 5 43503793 43503793 C T C5orf34 Missense_Mutation p.M334I 0.14 tolerated(0.45) benign(0.003) TCGA-CD-5801-01 5 65458386 65458386 T G SREK1 Missense_Mutation p.F241V 0.06 deleterious(0.02) benign(0.425) TCGA-CD-5801-01 5 73931059 73931059 C T ENC1 Missense_Mutation p.D418N 0.15 tolerated(0.14) benign(0.172) TCGA-CD-5801-01 5 7827026 7827026 A C ADCY2 3'UTR 0.09 TCGA-CD-5801-01 5 7868084 7868084 T C FASTKD3 Missense_Mutation p.K38R 0.03 tolerated(0.82) benign(0.002) TCGA-CD-5801-01 5 94927138 94927138 T G ARSK Missense_Mutation p.L302R 0.03 deleterious(0) probably_damaging(0.952) TCGA-CD-5801-01 5 9629127 9629127 G A TAS2R1 3'UTR 0.15 TCGA-CD-5801-01 6 101214491 101214491 C T ASCC3 Missense_Mutation p.E563K 0.11 deleterious(0) probably_damaging(0.973) TCGA-CD-5801-01 6 102124587 102124587 G T GRIK2 Missense_Mutation p.A211S 0.13 tolerated(0.34) benign(0.036) TCGA-CD-5801-01 6 109798005 109798005 T C ZBTB24 Missense_Mutation p.T361A 0.15 deleterious(0.02) possibly_damaging(0.771) TCGA-CD-5801-01 6 109954220 109954220 A C AK9 Missense_Mutation p.M387R 0.17 deleterious(0) benign(0.394) TCGA-CD-5801-01 6 111543321 111543321 A C SLC16A10 Missense_Mutation p.Q477H 0.05 tolerated(0.19) benign(0.048) TCGA-CD-5801-01 6 117842710 117842710 A C DCBLD1 Silent p.R161R 0.11 TCGA-CD-5801-01 6 130407341 130407341 C T L3MBTL3 Silent p.N488N 0.06 TCGA-CD-5801-01 6 131191232 131191232 T A EPB41L2 Missense_Mutation p.K693M 0.12 deleterious(0.02) probably_damaging(0.993) TCGA-CD-5801-01 6 145069618 145069618 G A UTRN Missense_Mutation p.D2726N 0.15 deleterious(0) probably_damaging(1) TCGA-CD-5801-01 6 170858250 170858250 C T PSMB1 Intron 0.25 TCGA-CD-5801-01 6 25799054 25799054 T G SLC17A1 Missense_Mutation p.I455L 0.10 deleterious(0.05) possibly_damaging(0.452) TCGA-CD-5801-01 6 26410259 26410259 T C BTN3A1 Silent p.S321S 0.12 TCGA-CD-5801-01 6 29430506 29430506 C T OR2H1 3'UTR 0.07 TCGA-CD-5801-01 6 29455004 29455004 T G MAS1L Missense_Mutation p.K226Q 0.04 tolerated(0.17) possibly_damaging(0.647) TCGA-CD-5801-01 6 30630751 30630751 T C DHX16 Silent p.R455R 0.07 TCGA-CD-5801-01 6 33632880 33632880 A G ITPR3 Silent p.S433S 0.17 TCGA-CD-5801-01 6 37430704 37430704 C T CMTR1 Silent p.S475S 0.10 TCGA-CD-5801-01 6 38690577 38690577 C T DNAH8 5'Flank 0.10 TCGA-CD-5801-01 6 38950132 38950132 A C DNAH8 Missense_Mutation p.K4065T 0.03 probably_damaging(1) TCGA-CD-5801-01 6 44220806 44220806 T C HSP90AB1 Missense_Mutation p.S586P 0.04 deleterious(0.01) possibly_damaging(0.566) TCGA-CD-5801-01 6 44254189 44254189 C T TCTE1 Missense_Mutation p.V120M 0.11 deleterious(0) probably_damaging(0.953) TCGA-CD-5801-01 6 46661814 46661814 A T TDRD6 Missense_Mutation p.K1983N 0.04 tolerated(0.08) benign(0.013) TCGA-CD-5801-01 6 55739784 55739784 T G BMP5 5'UTR 0.11 TCGA-CD-5801-01 6 56434681 56434681 A C DST Missense_Mutation p.D1994E 0.11 benign(0.008) TCGA-CD-5801-01 6 89907959 89907959 A C GABRR1 Missense_Mutation p.F118V 0.10 deleterious(0) probably_damaging(0.986) TCGA-CD-5801-01 7 100780734 100780734 A C SERPINE1 3'UTR 0.07 TCGA-CD-5801-01 7 107748104 107748104 G A LAMB4 Missense_Mutation p.S188L 0.19 deleterious(0.02) probably_damaging(0.987) TCGA-CD-5801-01 7 120965524 120965524 A G WNT16 5'Flank 0.04 TCGA-CD-5801-01 7 127253104 127253104 C T PAX4 Silent p.E221E 0.31 TCGA-CD-5801-01 7 131815261 131815261 T G PLXNA4 Missense_Mutation p.T1888P 0.21 deleterious(0.05) benign(0.192) TCGA-CD-5801-01 7 134363874 134363874 T C BPGM 3'UTR 0.14 TCGA-CD-5801-01 7 138455901 138455901 T C ATP6V0A4 Missense_Mutation p.E31G 0.08 deleterious(0) probably_damaging(0.909) TCGA-CD-5801-01 7 139092001 139092001 G A LUC7L2 Missense_Mutation p.G264R 0.07 deleterious(0.03) probably_damaging(0.944) TCGA-CD-5801-01 7 140453134 140453134 T C BRAF Missense_Mutation p.K601E 0.11 deleterious(0) benign(0.411) TCGA-CD-5801-01 7 141352816 141352816 A G AGK 3'UTR 0.10 TCGA-CD-5801-01 7 142460771 142460771 C T PRSS1 Missense_Mutation p.S215F 0.03 deleterious(0) probably_damaging(0.999) TCGA-CD-5801-01 7 148801048 148801048 A T ZNF425 Missense_Mutation p.S639T 0.07 deleterious(0.04) possibly_damaging(0.833) TCGA-CD-5801-01 7 21779255 21779255 G A DNAH11 Silent p.P2633P 0.06 TCGA-CD-5801-01 7 31146113 31146113 C A ADCYAP1R1 Missense_Mutation p.Q436K 0.09 deleterious(0.01) benign(0.02) TCGA-CD-5801-01 7 38530710 38530710 T G AMPH Missense_Mutation p.K112N 0.10 deleterious(0) probably_damaging(0.976) TCGA-CD-5801-01 7 42005486 42005486 G A GLI3 Missense_Mutation p.S1062L 0.10 tolerated(0.64) benign(0.001) TCGA-CD-5801-01 7 43581478 43581478 T G HECW1 Missense_Mutation p.L1377V 0.06 deleterious(0.02) possibly_damaging(0.802) TCGA-CD-5801-01 7 43918314 43918314 A G URGCP Missense_Mutation p.F250L 0.12 tolerated(0.09) benign(0.002) TCGA-CD-5801-01 7 45688316 45688316 C T ADCY1 Silent p.C356C 0.06 TCGA-CD-5801-01 7 48311482 48311482 T G ABCA13 Missense_Mutation p.F740C 0.12 possibly_damaging(0.525) TCGA-CD-5801-01 7 48319313 48319313 C A ABCA13 Missense_Mutation p.T2841K 0.10 benign(0.101) TCGA-CD-5801-01 7 53104142 53104142 G A POM121L12 Missense_Mutation p.A260T 0.09 tolerated_low_confidence(0.53) probably_damaging(0.913) TCGA-CD-5801-01 7 54610330 54610330 G A VSTM2A 5'UTR 0.06 TCGA-CD-5801-01 7 56170610 56170610 T G CHCHD2 Missense_Mutation p.K132T 0.11 tolerated(0.41) benign(0.206) TCGA-CD-5801-01 7 64438222 64438222 T G ZNF117 3'UTR 0.06 TCGA-CD-5801-01 7 73950527 73950527 T C GTF2IRD1 Missense_Mutation p.L476P 0.05 tolerated(0.1) benign(0.014) TCGA-CD-5801-01 7 74193722 74193722 T G NCF1 Missense_Mutation p.F117V 0.06 deleterious(0) probably_damaging(0.986) TCGA-CD-5801-01 7 8125957 8125957 A G GLCCI1 Missense_Mutation p.K478R 0.05 tolerated(0.51) possibly_damaging(0.632) TCGA-CD-5801-01 7 91667822 91667822 A C AKAP9 Missense_Mutation p.Q1476H 0.10 possibly_damaging(0.812) TCGA-CD-5801-01 7 91730334 91730334 A C AKAP9 Missense_Mutation p.Q3687H 0.04 benign(0.019) TCGA-CD-5801-01 7 92764157 92764157 A G SAMD9L Silent p.S376S 0.03 TCGA-CD-5801-01 7 98985726 98985726 G A ARPC1B Silent p.V78V 0.07 TCGA-CD-5801-01 7 99017532 99017532 G A ATP5J2-PTCD1 3'UTR 0.08 TCGA-CD-5801-01 7 99161661 99161661 A C ZNF655 Intron 0.11 TCGA-CD-5801-01 7 99693469 99693469 G A MCM7 Missense_Mutation p.P508L 0.10 deleterious(0) possibly_damaging(0.833) TCGA-CD-5801-01 8 105026758 105026758 C T RIMS2 Silent p.V1083V 0.05 TCGA-CD-5801-01 8 105361784 105361784 A G DCSTAMP Missense_Mutation p.E335G 0.12 deleterious(0) possibly_damaging(0.827) TCGA-CD-5801-01 8 10755462 10755462 T G XKR6 Nonstop_Mutation p.*642Yext*24 0.14 TCGA-CD-5801-01 8 110569190 110569190 G T EBAG9 Missense_Mutation p.L116F 0.04 tolerated(0.39) benign(0.011) TCGA-CD-5801-01 8 124515567 124515567 C T FBXO32 3'UTR 0.10 TCGA-CD-5801-01 8 124664441 124664441 C A KLHL38 Silent p.L242L 0.07 TCGA-CD-5801-01 8 124801950 124801950 T G FAM91A1 Missense_Mutation p.V459G 0.17 tolerated(0.4) benign(0) TCGA-CD-5801-01 8 124985675 124985675 T C FER1L6 Missense_Mutation p.V150A 0.13 tolerated(0.06) probably_damaging(0.999) TCGA-CD-5801-01 8 143623495 143623495 C T BAI1 Silent p.P1300P 0.12 TCGA-CD-5801-01 8 2063895 2063895 T A MYOM2 Missense_Mutation p.D1108E 0.16 tolerated(0.19) benign(0.438) TCGA-CD-5801-01 8 73848915 73848915 G A KCNB2 Missense_Mutation p.R442Q 0.14 deleterious(0.01) probably_damaging(0.971) TCGA-CD-5801-01 8 8175695 8175695 T G SGK223 Missense_Mutation p.K1397T 0.14 unknown(0) TCGA-CD-5801-01 8 99030226 99030226 A G MATN2 Silent p.K567K 0.11 TCGA-CD-5801-01 9 103111616 103111616 A C TEX10 Missense_Mutation p.D10E 0.06 deleterious(0) probably_damaging(0.999) TCGA-CD-5801-01 9 103204421 103204421 C T MSANTD3 Silent p.F67F 0.09 TCGA-CD-5801-01 9 108136917 108136917 C A SLC44A1 Missense_Mutation p.F511L 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-CD-5801-01 9 115579987 115579987 T C SNX30 Silent p.S117S 0.05 TCGA-CD-5801-01 9 121929915 121929915 G A BRINP1 Missense_Mutation p.P578L 0.09 deleterious(0) probably_damaging(0.981) TCGA-CD-5801-01 9 124914536 124914536 A G NDUFA8 Missense_Mutation p.L68S 0.07 deleterious(0) benign(0.094) TCGA-CD-5801-01 9 130884681 130884681 C T PTGES2 Missense_Mutation p.R322Q 0.12 tolerated(0.06) benign(0.165) TCGA-CD-5801-01 9 131346634 131346634 A C SPTAN1 Missense_Mutation p.K756T 0.06 tolerated(0.13) benign(0.138) TCGA-CD-5801-01 9 131600576 131600576 A G CCBL1 Missense_Mutation p.L91P 0.07 tolerated(0.14) benign(0.033) TCGA-CD-5801-01 9 138011358 138011358 C T OLFM1 Silent p.Y246Y 0.13 TCGA-CD-5801-01 9 139748065 139748065 C T MAMDC4 Silent p.L133L 0.17 TCGA-CD-5801-01 9 14307364 14307364 G A NFIB Silent p.L62L 0.14 TCGA-CD-5801-01 9 21304795 21304795 A G IFNA5 Missense_Mutation p.L154P 0.04 deleterious(0) probably_damaging(1) TCGA-CD-5801-01 9 36112368 36112368 G A RECK Missense_Mutation p.S652N 0.07 tolerated(0.19) benign(0.067) TCGA-CD-5801-01 9 37356915 37356915 A G ZCCHC7 Missense_Mutation p.R428G 0.05 deleterious(0.01) benign(0.372) TCGA-CD-5801-01 9 40784134 40784134 C A ZNF658 Missense_Mutation p.D71Y 0.14 tolerated(0.07) benign(0.001) TCGA-CD-5801-01 9 5570031 5570031 C T PDCD1LG2 3'UTR 0.09 TCGA-CD-5801-01 9 73151754 73151754 A C TRPM3 Missense_Mutation p.D1413E 0.04 tolerated_low_confidence(1) benign(0.066) TCGA-CD-5801-01 9 75567908 75567908 G T ALDH1A1 Silent p.S3S 0.12 TCGA-CD-5801-01 9 84607680 84607680 C T SPATA31D1 Silent p.S765S 0.08 TCGA-CD-5801-01 9 8521506 8521506 A T PTPRD Missense_Mutation p.N244K 0.10 tolerated(0.09) probably_damaging(0.997) TCGA-CD-5801-01 X 102586699 102586699 C A TCEAL7 3'UTR 0.21 TCGA-CD-5801-01 X 105855681 105855681 A G CXorf57 Missense_Mutation p.K124R 0.03 tolerated(0.81) benign(0.009) TCGA-CD-5801-01 X 11779011 11779011 T A MSL3 Missense_Mutation p.L113I 0.18 deleterious(0.01) probably_damaging(0.967) TCGA-CD-5801-01 X 118221482 118221482 T C KIAA1210 Silent p.Q1237Q 0.19 TCGA-CD-5801-01 X 122830587 122830587 T G THOC2 Missense_Mutation p.I151L 0.11 tolerated(0.07) benign(0.019) TCGA-CD-5801-01 X 132162027 132162027 A C USP26 Silent p.T74T 0.21 TCGA-CD-5801-01 X 135862980 135862980 T G ARHGEF6 Missense_Mutation p.K21T 0.10 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-CD-5801-01 X 13792574 13792574 A C GPM6B Intron 0.25 TCGA-CD-5801-01 X 24006435 24006435 T G KLHL15 Missense_Mutation p.K473T 0.23 tolerated(0.14) possibly_damaging(0.535) TCGA-CD-5801-01 X 24226360 24226360 T G ZFX Silent p.V322V 0.05 TCGA-CD-5801-01 X 29301159 29301159 A C IL1RAPL1 Missense_Mutation p.N63H 0.21 deleterious(0) probably_damaging(0.994) TCGA-CD-5801-01 X 54472631 54472632 - G FGD1 Frame_Shift_Ins p.E933Rfs*18 0.30 TCGA-CD-5801-01 X 54785174 54785174 T C ITIH6 Missense_Mutation p.N445D 0.13 deleterious(0) probably_damaging(0.993) TCGA-CD-5801-01 X 54955296 54955296 A C TRO Missense_Mutation p.E713D 0.24 deleterious(0) unknown(0) TCGA-CD-5801-01 X 64140008 64140008 C T ZC4H2 Silent p.L117L 0.21 TCGA-CD-5801-01 X 73812787 73812787 A G RLIM Silent p.S121S 0.08 TCGA-CD-5801-01 X 86773290 86773290 G A KLHL4 Missense_Mutation p.D132N 0.15 tolerated(0.06) benign(0.005) TCGA-CD-5801-01 X 92926741 92926741 T G NAP1L3 3'UTR 0.16 TCGA-CD-5801-01 X 99551258 99551258 T G PCDH19 3'UTR 0.24 TCGA-CD-5802-01 10 75258563 75258563 G A USP54 Nonsense_Mutation p.R1627* 0.24 TCGA-CD-5802-01 11 36484155 36484155 C A PRR5L Missense_Mutation p.P326T 0.19 deleterious(0.04) benign(0.089) TCGA-CD-5802-01 11 47196833 47196833 G C ARFGAP2 Missense_Mutation p.A99G 0.20 deleterious(0) benign(0.047) TCGA-CD-5802-01 11 60183690 60183690 C T MS4A14 Missense_Mutation p.P450S 0.28 tolerated(0.41) benign(0.006) TCGA-CD-5802-01 11 65655421 65655421 C T FIBP Missense_Mutation p.A90T 0.20 tolerated(0.58) benign(0.007) TCGA-CD-5802-01 12 1005298 1005298 C T WNK1 Missense_Mutation p.S1882F 0.10 deleterious(0.01) probably_damaging(0.921) TCGA-CD-5802-01 12 13241798 13241798 C T GSG1 Missense_Mutation p.R137K 0.23 tolerated(0.29) probably_damaging(0.91) TCGA-CD-5802-01 12 4853826 4853826 G A GALNT8 Missense_Mutation p.V274I 0.37 tolerated(0.06) possibly_damaging(0.463) TCGA-CD-5802-01 12 56334503 56334503 C T DGKA Silent p.V338V 0.12 TCGA-CD-5802-01 12 56335359 56335359 C T DGKA Missense_Mutation p.P414L 0.08 deleterious(0.01) probably_damaging(1) TCGA-CD-5802-01 12 56397752 56397752 C T SUOX Silent p.P193P 0.04 TCGA-CD-5802-01 12 57865874 57865874 G A GLI1 3'UTR 0.08 TCGA-CD-5802-01 13 77671839 77671839 C T MYCBP2 Missense_Mutation p.M3112I 0.18 benign(0.002) TCGA-CD-5802-01 14 45657009 45657009 G A FANCM Missense_Mutation p.M1566I 0.23 tolerated(0.07) benign(0.049) TCGA-CD-5802-01 14 68250043 68250043 G A ZFYVE26 Missense_Mutation p.P1276S 0.20 tolerated(0.83) benign(0.004) TCGA-CD-5802-01 15 30065540 30065545 TCCAAA - TJP1 In_Frame_Del p.F34_G35del 0.13 TCGA-CD-5802-01 15 42115796 42115796 C A MAPKBP1 Silent p.A1256A 0.20 TCGA-CD-5802-01 17 30615917 30615917 G A RHBDL3 Missense_Mutation p.R134Q 0.21 deleterious(0) probably_damaging(0.997) TCGA-CD-5802-01 17 3716433 3716433 G A C17orf85 Nonsense_Mutation p.Q590* 0.18 TCGA-CD-5802-01 17 3716434 3716434 C T C17orf85 Silent p.E589E 0.18 TCGA-CD-5802-01 17 42940215 42940215 G A EFTUD2 Silent p.H491H 0.27 TCGA-CD-5802-01 17 67004307 67004317 CCAGTGCTTGG - ABCA9 Frame_Shift_Del p.Q1070Gfs*20 0.17 TCGA-CD-5802-01 17 79207768 79207768 C T ENTHD2 Intron 0.14 TCGA-CD-5802-01 18 9535908 9535908 C T RALBP1 Silent p.S647S 0.12 TCGA-CD-5802-01 18 9595144 9595144 C T PPP4R1 Silent p.V20V 0.17 TCGA-CD-5802-01 19 39960816 39960816 G A SUPT5H Missense_Mutation p.V478M 0.22 deleterious(0) probably_damaging(0.999) TCGA-CD-5802-01 19 41122902 41122902 C - LTBP4 Frame_Shift_Del p.T1042Rfs*50 0.18 TCGA-CD-5802-01 19 45815134 45815134 G A CKM Silent p.L176L 0.22 TCGA-CD-5802-01 19 54377880 54377880 C G MYADM 3'UTR 0.35 TCGA-CD-5802-01 19 58003627 58003627 C T ZNF419 Intron 0.15 TCGA-CD-5802-01 1 220242771 220242771 C T BPNT1 Missense_Mutation p.V113M 0.21 deleterious(0) probably_damaging(0.999) TCGA-CD-5802-01 1 78395101 78395101 G C NEXN Missense_Mutation p.R322T 0.29 tolerated(0.17) benign(0.044) TCGA-CD-5802-01 1 86591541 86591541 C T COL24A1 Missense_Mutation p.D160N 0.06 tolerated(0.27) benign(0.026) TCGA-CD-5802-01 1 90058582 90058582 A - LRRC8B Frame_Shift_Del p.T798Rfs*3 0.21 TCGA-CD-5802-01 20 39991532 39991532 A G EMILIN3 Missense_Mutation p.F226S 0.21 deleterious(0) probably_damaging(0.915) TCGA-CD-5802-01 22 42262865 42262866 GA - SREBF2 Frame_Shift_Del p.E41Vfs*3 0.17 TCGA-CD-5802-01 2 11053370 11053370 C T KCNF1 Missense_Mutation p.T273M 0.18 deleterious(0) probably_damaging(1) TCGA-CD-5802-01 2 133175294 133175294 G A GPR39 Missense_Mutation p.A227T 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-CD-5802-01 2 187368932 187368933 - GA ZC3H15 Frame_Shift_Ins p.R240Sfs*5 0.15 TCGA-CD-5802-01 2 20871059 20871059 G A GDF7 Silent p.A409A 0.21 TCGA-CD-5802-01 2 218683433 218683433 G A TNS1 Missense_Mutation p.R1104W 0.18 deleterious(0.04) benign(0.001) TCGA-CD-5802-01 2 27373194 27373194 G A TCF23 Silent p.P142P 0.17 TCGA-CD-5802-01 3 100084341 100084341 G A TOMM70A 3'UTR 0.19 TCGA-CD-5802-01 3 138669287 138669287 G C C3orf72 Missense_Mutation p.G134A 0.18 deleterious_low_confidence(0) probably_damaging(0.959) TCGA-CD-5802-01 3 172165669 172165669 A T GHSR Missense_Mutation p.F179I 0.11 deleterious(0.03) benign(0.444) TCGA-CD-5802-01 3 186272188 186272190 AGA - TBCCD1 In_Frame_Del p.F466del 0.21 TCGA-CD-5802-01 3 186272346 186272346 A G TBCCD1 Missense_Mutation p.V414A 0.19 deleterious(0.02) benign(0.019) TCGA-CD-5802-01 3 186509621 186509621 T C RFC4 Missense_Mutation p.K232E 0.05 tolerated(0.69) benign(0.001) TCGA-CD-5802-01 3 19384207 19384207 G A KCNH8 Splice_Site p.X190_splice 0.21 TCGA-CD-5802-01 3 43344605 43344605 T G SNRK 5'UTR 0.32 TCGA-CD-5802-01 4 177142387 177142387 C A ASB5 Nonsense_Mutation p.E197* 0.10 TCGA-CD-5802-01 4 5969171 5969171 C T C4orf50 Missense_Mutation p.V617I 0.27 tolerated(0.19) benign(0.15) TCGA-CD-5802-01 5 176832124 176832124 C T F12 Missense_Mutation p.E154K 0.22 tolerated(0.57) benign(0.057) TCGA-CD-5802-01 5 5463022 5463022 C T KIAA0947 Missense_Mutation p.S1192F 0.16 deleterious(0) probably_damaging(1) TCGA-CD-5802-01 5 73931260 73931260 C G ENC1 Missense_Mutation p.E351Q 0.09 tolerated(0.14) possibly_damaging(0.62) TCGA-CD-5802-01 6 168910683 168910683 G T SMOC2 Missense_Mutation p.R58M 0.22 deleterious(0) probably_damaging(0.997) TCGA-CD-5802-01 6 26156976 26156976 G A HIST1H1E Missense_Mutation p.A120T 0.38 tolerated(0.16) unknown(0) TCGA-CD-5802-01 6 29643828 29643828 G A ZFP57 Silent p.V44V 0.26 TCGA-CD-5802-01 6 33177736 33177736 G A RING1 Missense_Mutation p.R95Q 0.21 deleterious(0) benign(0.011) TCGA-CD-5802-01 7 28844124 28844124 C T CREB5 Silent p.T337T 0.15 TCGA-CD-5802-01 7 5781105 5781105 C A RNF216 Missense_Mutation p.L181F 0.19 tolerated_low_confidence(0.09) benign(0.018) TCGA-CD-5802-01 8 27660907 27660907 C G ESCO2 Silent p.T586T 0.17 TCGA-CD-5802-01 8 33371030 33371030 C T TTI2 5'UTR 0.21 TCGA-CD-5802-01 8 70536309 70536309 G A SULF1 Missense_Mutation p.R576H 0.20 deleterious(0.03) benign(0.133) TCGA-CD-5802-01 9 101536246 101536246 A G ANKS6 Silent p.R578R 0.07 TCGA-CD-5802-01 9 12693952 12693952 G A TYRP1 5'UTR 0.18 TCGA-CD-5802-01 9 139873804 139873804 C T PTGDS Intron 0.21 TCGA-CD-5802-01 9 14748594 14748594 G A FREM1 Silent p.S1867S 0.19 TCGA-CD-5802-01 9 35045805 35045805 A G C9orf131 Missense_Mutation p.Q1060R 0.21 tolerated(0.05) possibly_damaging(0.743) TCGA-CD-5802-01 9 90321137 90321137 G A DAPK1 Missense_Mutation p.V1051M 0.29 tolerated(0.17) possibly_damaging(0.499) TCGA-CD-5802-01 X 153052343 153052343 G A IDH3G Silent p.I279I 0.46 TCGA-CD-5803-01 11 47595060 47595060 G A KBTBD4 Missense_Mutation p.P343S 0.04 tolerated(0.49) benign(0.006) TCGA-CD-5803-01 11 62763206 62763206 C T SLC22A8 Missense_Mutation p.R324H 0.12 deleterious(0) probably_damaging(0.97) TCGA-CD-5803-01 11 7064427 7064427 A T NLRP14 Silent p.T390T 0.08 TCGA-CD-5803-01 11 89774323 89774323 A T TRIM49C Missense_Mutation p.T322S 0.11 tolerated(0.71) benign(0.004) TCGA-CD-5803-01 12 117768788 117768788 T A NOS1 Silent p.G29G 0.11 TCGA-CD-5803-01 12 121098064 121098064 G T CABP1 Missense_Mutation p.G251C 0.09 deleterious(0) probably_damaging(1) TCGA-CD-5803-01 12 21593302 21593302 T G PYROXD1 Missense_Mutation p.L29V 0.05 deleterious(0.04) benign(0.439) TCGA-CD-5803-01 12 58193602 58193602 C G AVIL Missense_Mutation p.E774D 0.08 tolerated(0.17) benign(0.006) TCGA-CD-5803-01 15 44867122 44867122 A G SPG11 Missense_Mutation p.L1995P 0.16 deleterious(0) probably_damaging(0.955) TCGA-CD-5803-01 15 48460981 48460981 C T MYEF2 Missense_Mutation p.G73R 0.07 tolerated(0.09) benign(0.239) TCGA-CD-5803-01 15 78909415 78909415 G C CHRNA3 Missense_Mutation p.R110G 0.06 deleterious(0) possibly_damaging(0.878) TCGA-CD-5803-01 15 78909416 78909416 C T CHRNA3 Missense_Mutation p.M109I 0.06 tolerated(0.84) benign(0.001) TCGA-CD-5803-01 16 23197794 23197794 C G SCNN1G Missense_Mutation p.L68V 0.16 tolerated(0.27) benign(0.009) TCGA-CD-5803-01 16 46918617 46918617 G A GPT2 5'UTR 0.09 TCGA-CD-5803-01 18 28671077 28671077 G A DSC2 Silent p.L130L 0.09 TCGA-CD-5803-01 18 48591920 48591949 CTTTTGTTTGGGTCAACTCTCCAATGTCCA - SMAD4 In_Frame_Del p.F362_H371del 0.24 TCGA-CD-5803-01 19 37130636 37130636 T A ZNF461 Missense_Mutation p.H204L 0.12 tolerated(0.72) benign(0.003) TCGA-CD-5803-01 19 48806042 48806042 C A CCDC114 Missense_Mutation p.L346F 0.15 deleterious(0.01) probably_damaging(0.979) TCGA-CD-5803-01 19 5258067 5258067 C T PTPRS Missense_Mutation p.G223S 0.14 deleterious(0) probably_damaging(1) TCGA-CD-5803-01 19 58946280 58946280 G A ZNF132 Silent p.D177D 0.10 TCGA-CD-5803-01 1 108247235 108247235 C T VAV3 Missense_Mutation p.G548R 0.05 tolerated(0.31) probably_damaging(0.982) TCGA-CD-5803-01 1 248813773 248813773 C T OR2T27 Missense_Mutation p.R138H 0.15 tolerated(0.85) benign(0.014) TCGA-CD-5803-01 1 27059176 27059176 C T ARID1A Nonsense_Mutation p.Q605* 0.12 TCGA-CD-5803-01 22 26776362 26776362 C T SEZ6L 3'Flank 0.18 TCGA-CD-5803-01 2 125660527 125660527 G A CNTNAP5 Missense_Mutation p.V1168I 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-CD-5803-01 3 10081483 10081483 G A FANCD2 Missense_Mutation p.E217K 0.10 deleterious(0) probably_damaging(0.994) TCGA-CD-5803-01 3 141305519 141305519 C T RASA2 Missense_Mutation p.R620W 0.14 deleterious(0) probably_damaging(0.912) TCGA-CD-5803-01 3 161221712 161221712 T C OTOL1 Silent p.T472T 0.09 TCGA-CD-5803-01 3 45814049 45814049 C A SLC6A20 Missense_Mutation p.G214V 0.11 deleterious(0) probably_damaging(0.979) TCGA-CD-5803-01 4 52945045 52945045 C A SPATA18 Missense_Mutation p.Q389K 0.06 deleterious(0.03) possibly_damaging(0.828) TCGA-CD-5803-01 4 55155048 55155048 C T PDGFRA Silent p.D919D 0.06 TCGA-CD-5803-01 4 57189672 57189672 C T KIAA1211 Missense_Mutation p.T1106M 0.11 deleterious(0) possibly_damaging(0.897) TCGA-CD-5803-01 5 137426675 137426675 G A WNT8A Silent p.K323K 0.10 TCGA-CD-5803-01 5 137734048 137734048 G C KDM3B Missense_Mutation p.E1005Q 0.13 deleterious(0) probably_damaging(0.999) TCGA-CD-5803-01 5 140222519 140222519 G A PCDHA8 Missense_Mutation p.R538H 0.33 deleterious_low_confidence(0.01) benign(0.152) TCGA-CD-5803-01 5 150310621 150310621 G T ZNF300P1 RNA 0.09 TCGA-CD-5803-01 5 35033593 35033593 T C AGXT2 Missense_Mutation p.E216G 0.14 tolerated(0.34) benign(0.002) TCGA-CD-5803-01 6 88854334 88854334 C A CNR1 Missense_Mutation p.R220S 0.17 deleterious(0.02) possibly_damaging(0.527) TCGA-CD-5803-01 7 102079422 102079422 G A ORAI2 Missense_Mutation p.V7M 0.10 deleterious_low_confidence(0.01) benign(0.344) TCGA-CD-5803-01 7 139829297 139829297 A G KDM7A Silent p.Y185Y 0.15 TCGA-CD-5803-01 7 91864228 91864228 C T KRIT1 Missense_Mutation p.V247M 0.08 deleterious(0.03) probably_damaging(0.969) TCGA-CD-5803-01 8 124357296 124357296 G C ATAD2 Missense_Mutation p.A849G 0.05 deleterious(0) probably_damaging(0.98) TCGA-CD-5803-01 9 116346507 116346507 C T RGS3 Missense_Mutation p.R939C 0.06 deleterious(0) probably_damaging(0.991) TCGA-CD-5803-01 X 107802349 107802349 G T COL4A5 Missense_Mutation p.G66V 0.13 unknown(0) TCGA-CD-5803-01 X 12939190 12939190 G T TLR8 Missense_Mutation p.K677N 0.05 tolerated(0.45) benign(0.001) TCGA-CD-5803-01 X 49021179 49021179 A T MAGIX Intron 0.17 TCGA-CD-5804-01 10 105819938 105819938 C A COL17A1 Silent p.L360L 0.13 TCGA-CD-5804-01 10 106970990 106970990 G T SORCS3 Missense_Mutation p.S786I 0.28 deleterious(0.02) possibly_damaging(0.477) TCGA-CD-5804-01 10 134219292 134219292 G A PWWP2B Missense_Mutation p.E430K 0.39 deleterious(0.01) probably_damaging(0.998) TCGA-CD-5804-01 10 6520982 6520982 G A PRKCQ Missense_Mutation p.T442M 0.23 deleterious(0) probably_damaging(0.989) TCGA-CD-5804-01 11 12316180 12316180 G A MICALCL Missense_Mutation p.R401K 0.16 tolerated(0.17) benign(0.02) TCGA-CD-5804-01 11 26552873 26552873 C T ANO3 Missense_Mutation p.R287W 0.03 deleterious(0) probably_damaging(0.999) TCGA-CD-5804-01 11 43515387 43515387 C T TTC17 Missense_Mutation p.P1120L 0.20 deleterious(0) possibly_damaging(0.713) TCGA-CD-5804-01 11 62064987 62064987 C T SCGB1D4 Missense_Mutation p.D67N 0.19 tolerated(0.17) probably_damaging(0.999) TCGA-CD-5804-01 11 92532764 92532764 C T FAT3 Silent p.V2195V 0.17 TCGA-CD-5804-01 12 129558572 129558572 A G TMEM132D Missense_Mutation p.F1050L 0.15 deleterious(0.02) possibly_damaging(0.686) TCGA-CD-5804-01 12 54968991 54968993 TTC - PDE1B In_Frame_Del p.F393del 0.21 TCGA-CD-5804-01 12 56554409 56554419 GCGTTTGTGAG - MYL6 Splice_Site p.X143_splice 0.15 TCGA-CD-5804-01 12 8687173 8687173 G A CLEC4E 3'UTR 0.40 TCGA-CD-5804-01 13 24384033 24384033 A C MIPEP Missense_Mutation p.C562G 0.22 deleterious(0.01) possibly_damaging(0.703) TCGA-CD-5804-01 13 31231880 31231880 G T USPL1 Missense_Mutation p.A556S 0.08 tolerated(0.1) benign(0.153) TCGA-CD-5804-01 13 33638175 33638175 C A KL Missense_Mutation p.P964Q 0.67 deleterious(0.05) possibly_damaging(0.809) TCGA-CD-5804-01 14 20404281 20404281 C T OR4K1 Silent p.G152G 0.22 TCGA-CD-5804-01 14 21899993 21899993 T C CHD8 5'Flank 0.27 TCGA-CD-5804-01 14 47314968 47314968 C T MDGA2 Splice_Site p.X997_splice 0.40 TCGA-CD-5804-01 14 51219348 51219348 C T NIN Missense_Mutation p.R1613H 0.20 tolerated(0.1) benign(0.014) TCGA-CD-5804-01 14 51347167 51347167 C T ABHD12B Intron 0.13 TCGA-CD-5804-01 14 72941366 72941366 C T RGS6 Nonsense_Mutation p.R218* 0.18 TCGA-CD-5804-01 14 75469999 75469999 G A EIF2B2 Missense_Mutation p.R62H 0.10 deleterious(0.03) possibly_damaging(0.797) TCGA-CD-5804-01 15 26793117 26793117 G C GABRB3 Missense_Mutation p.F415L 0.14 tolerated(0.65) benign(0.001) TCGA-CD-5804-01 15 48533736 48533736 G A SLC12A1 Missense_Mutation p.G414R 0.15 deleterious(0) probably_damaging(0.948) TCGA-CD-5804-01 16 21073986 21073986 G A DNAH3 Silent p.N1179N 0.29 TCGA-CD-5804-01 16 320806 320806 G A RGS11 Missense_Mutation p.A335V 0.26 deleterious(0.01) probably_damaging(0.99) TCGA-CD-5804-01 17 11532791 11532791 G A DNAH9 Missense_Mutation p.V470I 0.16 benign(0.004) TCGA-CD-5804-01 17 26940280 26940280 C T SGK494 Silent p.K136K 0.09 TCGA-CD-5804-01 17 34062186 34062186 C T RASL10B 5'UTR 0.16 TCGA-CD-5804-01 17 7574018 7574018 G A TP53 Missense_Mutation p.R337C 0.45 tolerated(0.09) benign(0.344) TCGA-CD-5804-01 17 76795809 76795809 C - USP36 Frame_Shift_Del p.E1022Sfs*22 0.15 TCGA-CD-5804-01 17 7809236 7809236 G A CHD3 Missense_Mutation p.M1488I 0.12 benign(0.072) TCGA-CD-5804-01 17 8280949 8280949 T C RPL26 Missense_Mutation p.K124R 0.22 tolerated(0.25) benign(0.002) TCGA-CD-5804-01 18 48591825 48591825 G A SMAD4 Missense_Mutation p.E330K 0.17 deleterious(0) probably_damaging(1) TCGA-CD-5804-01 19 15989716 15989716 C T CYP4F2 Silent p.A476A 0.45 TCGA-CD-5804-01 19 17644504 17644517 TCCTTGGGTAAGGG - FAM129C Splice_Site p.X173_splice 0.20 TCGA-CD-5804-01 19 17951134 17951134 T C JAK3 Missense_Mutation p.N387D 0.28 tolerated(0.08) benign(0.001) TCGA-CD-5804-01 19 38939333 38939333 C T RYR1 Silent p.G334G 0.09 TCGA-CD-5804-01 19 51170296 51170296 C T SHANK1 Missense_Mutation p.A1641T 0.31 unknown(0) TCGA-CD-5804-01 19 52216778 52216778 C T HAS1 Missense_Mutation p.A547T 0.24 tolerated(0.18) possibly_damaging(0.572) TCGA-CD-5804-01 19 55800942 55800942 C T BRSK1 Missense_Mutation p.R138C 0.06 deleterious(0.02) probably_damaging(0.976) TCGA-CD-5804-01 1 15386799 15386799 G A KAZN Splice_Site p.X349_splice 0.17 TCGA-CD-5804-01 1 158813155 158813155 G A MNDA Missense_Mutation p.A118T 0.15 tolerated(1) benign(0.003) TCGA-CD-5804-01 1 168066199 168066199 T C GPR161 Missense_Mutation p.R236G 0.31 deleterious(0) probably_damaging(1) TCGA-CD-5804-01 1 183094538 183094538 A C LAMC1 Missense_Mutation p.N885T 0.15 tolerated(0.23) benign(0.04) TCGA-CD-5804-01 1 53262458 53262458 T C ZYG11B Splice_Site p.X495_splice 0.14 TCGA-CD-5804-01 1 970694 970711 GCCTCCTGATGGTGAGTA - AGRN Splice_Site p.X168_splice 0.08 TCGA-CD-5804-01 20 13775515 13775515 T C NDUFAF5 Missense_Mutation p.V136A 0.11 tolerated(0.57) benign(0.155) TCGA-CD-5804-01 20 32232209 32232209 G A CBFA2T2 Silent p.A524A 0.13 TCGA-CD-5804-01 20 55748277 55748277 G A BMP7 Silent p.N375N 0.17 TCGA-CD-5804-01 22 32881120 32881120 G T FBXO7 Missense_Mutation p.Q237H 0.25 tolerated(0.21) benign(0.056) TCGA-CD-5804-01 22 41752693 41752693 G A ZC3H7B Silent p.K854K 0.15 TCGA-CD-5804-01 22 50616142 50616142 G A PANX2 Missense_Mutation p.R334Q 0.20 tolerated(0.05) possibly_damaging(0.472) TCGA-CD-5804-01 22 50728614 50728614 A T PLXNB2 Missense_Mutation p.Y134N 0.38 tolerated(0.1) probably_damaging(0.996) TCGA-CD-5804-01 2 210560612 210560612 G C MAP2 Missense_Mutation p.E1240Q 0.16 tolerated_low_confidence(0.09) probably_damaging(1) TCGA-CD-5804-01 2 227662551 227662551 G A IRS1 Nonsense_Mutation p.R302* 0.19 TCGA-CD-5804-01 2 242147068 242147068 G A ANO7 Missense_Mutation p.A408T 0.46 tolerated(0.84) benign(0.019) TCGA-CD-5804-01 3 126272213 126272213 C G C3orf22 Missense_Mutation p.K7N 0.43 deleterious(0) benign(0.011) TCGA-CD-5804-01 3 184911202 184911202 C T EHHADH Silent p.S328S 0.20 TCGA-CD-5804-01 3 85775696 85775696 A C CADM2 Missense_Mutation p.K22T 0.25 tolerated(0.42) benign(0.002) TCGA-CD-5804-01 3 99513454 99513454 C T COL8A1 Missense_Mutation p.R237W 0.20 deleterious(0.01) unknown(0) TCGA-CD-5804-01 4 26483541 26483541 G T CCKAR Silent p.R336R 0.17 TCGA-CD-5804-01 4 62845476 62845476 C T LPHN3 Nonsense_Mutation p.R933* 0.15 TCGA-CD-5804-01 5 134782298 134782298 G A C5orf20 Silent p.S167S 0.24 TCGA-CD-5804-01 5 13753603 13753603 C A DNAH5 Missense_Mutation p.E3537D 0.14 possibly_damaging(0.523) TCGA-CD-5804-01 5 140207815 140207815 C T PCDHA6 Missense_Mutation p.R47W 0.16 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CD-5804-01 5 140573466 140573466 C T PCDHB10 Silent p.N447N 0.21 TCGA-CD-5804-01 5 140604275 140604275 T A PCDHB14 Missense_Mutation p.F400I 0.16 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-CD-5804-01 5 146752830 146752830 G C STK32A Missense_Mutation p.K292N 0.12 deleterious(0) probably_damaging(0.999) TCGA-CD-5804-01 5 24509821 24509821 T C CDH10 Missense_Mutation p.I370M 0.07 tolerated(0.07) possibly_damaging(0.483) TCGA-CD-5804-01 5 31318074 31318074 G A CDH6 Intron 0.61 TCGA-CD-5804-01 6 112499358 112499358 A G LAMA4 Missense_Mutation p.V385A 0.16 tolerated(0.37) benign(0.007) TCGA-CD-5804-01 6 25261542 25261542 C - RP3-522P13.3 RNA 0.30 TCGA-CD-5804-01 6 57512667 57512667 G T PRIM2 3'UTR 0.04 TCGA-CD-5804-01 6 70070788 70070788 G A BAI3 Missense_Mutation p.R1208Q 0.08 deleterious(0.04) benign(0.127) TCGA-CD-5804-01 6 75828817 75828817 G T COL12A1 Silent p.V2432V 0.16 TCGA-CD-5804-01 7 100842085 100842085 C T MOGAT3 Silent p.P105P 0.11 TCGA-CD-5804-01 7 134849342 134849342 A G TMEM140 Missense_Mutation p.Y50C 0.15 deleterious(0) probably_damaging(0.986) TCGA-CD-5804-01 7 147092772 147092772 A C CNTNAP2 Missense_Mutation p.I524L 0.17 tolerated(0.12) possibly_damaging(0.665) TCGA-CD-5804-01 7 70800611 70800611 C T WBSCR17 Missense_Mutation p.P105L 0.20 tolerated(0.09) probably_damaging(0.995) TCGA-CD-5804-01 7 99699356 99699356 A G AP4M1 Missense_Mutation p.I7V 0.25 tolerated(0.27) benign(0.172) TCGA-CD-5804-01 8 52721826 52721826 G A PXDNL Missense_Mutation p.R27W 0.20 tolerated(0.05) probably_damaging(0.968) TCGA-CD-5804-01 8 61757606 61757606 C T CHD7 Silent p.A1678A 0.17 TCGA-CD-5804-01 8 63973833 63973833 C A TTPA Missense_Mutation p.S272I 0.16 deleterious(0.01) possibly_damaging(0.893) TCGA-CD-5804-01 8 67578740 67578740 T A VCPIP1 Missense_Mutation p.M152L 0.16 tolerated(0.42) benign(0.039) TCGA-CD-5804-01 9 101824554 101824554 G A COL15A1 Missense_Mutation p.D1187N 0.13 tolerated(0.06) probably_damaging(0.994) TCGA-CD-5804-01 9 111642444 111642444 G A IKBKAP Silent p.A1116A 0.12 TCGA-CD-5804-01 9 115221775 115221775 G T HSDL2 Silent p.G354G 0.16 TCGA-CD-5804-01 9 138838155 138838155 C T UBAC1 Silent p.A168A 0.18 TCGA-CD-5804-01 9 27949433 27949433 G A LINGO2 Missense_Mutation p.R413C 0.20 tolerated(0.09) benign(0.27) TCGA-CD-5804-01 9 90584120 90584120 C T CDK20 Missense_Mutation p.A278T 0.19 tolerated(0.61) benign(0.001) TCGA-CD-5804-01 9 96061535 96061535 G A WNK2 Missense_Mutation p.R2073H 0.11 unknown(0) TCGA-CD-5804-01 X 15342927 15342956 GCTCACATAAAATAATAAGGTTTTCTGGAA - PIGA In_Frame_Del p.L340_E349del 0.44 TCGA-CD-5804-01 X 19390935 19390935 C T MAP3K15 Missense_Mutation p.E982K 0.25 deleterious(0.04) benign(0.158) TCGA-CD-5804-01 X 96136668 96136668 C A DIAPH2 Missense_Mutation p.L180I 0.11 tolerated(0.05) unknown(0) TCGA-CD-5813-01 10 101147700 101147700 C T CNNM1 Missense_Mutation p.P822S 0.11 tolerated(0.29) benign(0.032) TCGA-CD-5813-01 10 101590609 101590609 G A ABCC2 Splice_Site p.X961_splice 0.13 TCGA-CD-5813-01 10 107023204 107023204 G C SORCS3 3'UTR 0.15 TCGA-CD-5813-01 10 135076493 135076493 G C ADAM8 3'UTR 0.12 TCGA-CD-5813-01 10 14881921 14881921 G A HSPA14 Silent p.V25V 0.11 TCGA-CD-5813-01 10 56424016 56424016 G A PCDH15 Nonsense_Mutation p.R3* 0.38 TCGA-CD-5813-01 10 72299481 72299481 G A PALD1 Missense_Mutation p.R624H 0.04 deleterious(0.02) probably_damaging(0.937) TCGA-CD-5813-01 10 73048388 73048388 G A UNC5B Missense_Mutation p.R322H 0.46 deleterious(0.01) probably_damaging(1) TCGA-CD-5813-01 11 120957792 120957792 C A TBCEL Missense_Mutation p.S421Y 0.29 deleterious(0.02) benign(0.073) TCGA-CD-5813-01 11 122931927 122931927 G C HSPA8 Missense_Mutation p.R36G 0.16 deleterious_low_confidence(0.04) probably_damaging(0.945) TCGA-CD-5813-01 11 123847671 123847671 C T OR10S1 Missense_Mutation p.R243H 0.12 tolerated(0.2) benign(0.008) TCGA-CD-5813-01 11 124439973 124439973 C A OR8A1 Missense_Mutation p.F3L 0.09 tolerated_low_confidence(0.28) benign(0.007) TCGA-CD-5813-01 11 55063149 55063149 C A TRIM51HP RNA 0.08 TCGA-CD-5813-01 11 5686494 5686494 T A TRIM5 Missense_Mutation p.N343Y 0.04 tolerated(0.07) benign(0.001) TCGA-CD-5813-01 11 62291859 62291859 C T AHNAK Missense_Mutation p.E3344K 0.30 possibly_damaging(0.502) TCGA-CD-5813-01 11 64108164 64108164 T C CCDC88B Missense_Mutation p.L49S 0.12 tolerated(0.76) benign(0) TCGA-CD-5813-01 11 64802601 64802601 C T SNX15 Missense_Mutation p.T148I 0.25 tolerated(0.18) possibly_damaging(0.654) TCGA-CD-5813-01 11 6898541 6898541 C T OR10A4 Silent p.R221R 0.05 TCGA-CD-5813-01 11 92495088 92495088 G T FAT3 Missense_Mutation p.D1246Y 0.12 probably_damaging(1) TCGA-CD-5813-01 12 100897210 100897210 T C NR1H4 Silent p.S15S 0.07 TCGA-CD-5813-01 12 110503813 110503814 - CCTCCTGC C12orf76 5'UTR 0.10 TCGA-CD-5813-01 12 110600787 110600787 T C IFT81 Silent p.L369L 0.14 TCGA-CD-5813-01 12 12618516 12618516 C A LOH12CR1 Missense_Mutation p.Q133K 0.15 tolerated(0.23) possibly_damaging(0.647) TCGA-CD-5813-01 12 21684076 21684077 - A C12orf39 Frame_Shift_Ins p.N102Kfs*3 0.33 TCGA-CD-5813-01 12 24737025 24737025 G T LINC00477 RNA 0.24 TCGA-CD-5813-01 12 26277452 26277452 C T BHLHE41 Silent p.K42K 0.07 TCGA-CD-5813-01 12 49239430 49239460 GCTTTCTATCTTTAGATGGGGAAGACTTCCG - DDX23 Frame_Shift_Del p.R36Gfs*129 0.19 TCGA-CD-5813-01 12 53346417 53346417 G A KRT18 Intron 0.27 TCGA-CD-5813-01 12 57037245 57037245 T C ATP5B Missense_Mutation p.D245G 0.21 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-CD-5813-01 12 57106973 57106973 A G NACA Missense_Mutation p.I838T 0.19 deleterious_low_confidence(0) benign(0.211) TCGA-CD-5813-01 12 57674202 57674203 - GTT R3HDM2 In_Frame_Ins p.Q413dup 0.27 TCGA-CD-5813-01 12 67675753 67675753 T C CAND1 Silent p.D44D 0.04 TCGA-CD-5813-01 12 7649556 7649556 G A CD163 Nonsense_Mutation p.R318* 0.05 TCGA-CD-5813-01 12 8048118 8048118 A G NANOGP1 RNA 0.15 TCGA-CD-5813-01 12 85500366 85500366 A C LRRIQ1 Missense_Mutation p.N1117T 0.24 deleterious(0) probably_damaging(0.998) TCGA-CD-5813-01 13 101266575 101266575 T C TMTC4 Missense_Mutation p.N649S 0.05 tolerated(0.23) benign(0.019) TCGA-CD-5813-01 13 25367266 25367266 C G RNF17 Missense_Mutation p.P341R 0.04 tolerated(0.42) benign(0.103) TCGA-CD-5813-01 13 46632517 46632517 C T CPB2 Splice_Site p.X266_splice 0.17 TCGA-CD-5813-01 13 90883437 90883437 G A MIR622 RNA 0.16 TCGA-CD-5813-01 14 102507909 102507909 A G DYNC1H1 Splice_Site p.X3981_splice 0.26 TCGA-CD-5813-01 14 58811468 58811468 A C ARID4A Missense_Mutation p.K321T 0.25 deleterious(0) probably_damaging(1) TCGA-CD-5813-01 14 65381170 65381170 C T CHURC1 Missense_Mutation p.S13F 0.04 tolerated_low_confidence(0.07) benign(0.129) TCGA-CD-5813-01 14 73437526 73437526 C G ZFYVE1 3'UTR 0.29 TCGA-CD-5813-01 14 74824989 74824989 G T VRTN Missense_Mutation p.R501S 0.24 deleterious(0.01) benign(0.074) TCGA-CD-5813-01 15 29346923 29346923 C T APBA2 Missense_Mutation p.A279V 0.25 tolerated_low_confidence(0.11) benign(0.016) TCGA-CD-5813-01 15 31355442 31355442 C T TRPM1 Missense_Mutation p.V299M 0.10 deleterious(0.01) benign(0.1) TCGA-CD-5813-01 15 34105725 34105725 C T RYR3 Missense_Mutation p.R3483W 0.10 probably_damaging(0.997) TCGA-CD-5813-01 15 34543254 34543254 A T SLC12A6 Missense_Mutation p.N446K 0.04 deleterious(0) probably_damaging(0.999) TCGA-CD-5813-01 15 43621774 43621774 T C LCMT2 Missense_Mutation p.H305R 0.15 deleterious(0) probably_damaging(1) TCGA-CD-5813-01 15 59506484 59506484 A C MYO1E Missense_Mutation p.N406K 0.16 deleterious(0) possibly_damaging(0.803) TCGA-CD-5813-01 15 69011828 69011828 G T CORO2B Missense_Mutation p.K416N 0.13 tolerated(0.1) benign(0.015) TCGA-CD-5813-01 15 72338496 72338496 G A MYO9A Missense_Mutation p.R137W 0.17 deleterious(0) probably_damaging(0.988) TCGA-CD-5813-01 15 75980816 75980816 G A CSPG4 Missense_Mutation p.R864C 0.15 deleterious(0) probably_damaging(0.932) TCGA-CD-5813-01 16 1400082 1400082 T C TSR3 Missense_Mutation p.E227G 0.44 deleterious(0.03) benign(0.147) TCGA-CD-5813-01 16 28844803 28844803 A T ATXN2L Missense_Mutation p.N667Y 0.17 deleterious(0) possibly_damaging(0.885) TCGA-CD-5813-01 16 67325250 67325250 T C KCTD19 Missense_Mutation p.I843V 0.15 tolerated(0.13) benign(0.001) TCGA-CD-5813-01 16 67573777 67573777 G A FAM65A Missense_Mutation p.R150Q 0.18 deleterious(0.01) probably_damaging(0.926) TCGA-CD-5813-01 16 68845760 68845760 G A CDH1 Missense_Mutation p.E336K 0.19 deleterious(0) probably_damaging(0.962) TCGA-CD-5813-01 16 69458604 69458604 G T CYB5B Silent p.A6A 0.36 TCGA-CD-5813-01 16 70177509 70177509 G A PDPR Missense_Mutation p.E568K 0.28 tolerated(0.08) benign(0.169) TCGA-CD-5813-01 16 72139930 72139930 T C DHX38 Silent p.D838D 0.35 TCGA-CD-5813-01 16 85948116 85948116 G A IRF8 Silent p.A197A 0.12 TCGA-CD-5813-01 17 25932711 25932711 C T KSR1 Silent p.D507D 0.18 TCGA-CD-5813-01 17 33849610 33849610 C T SLFN12L 5'UTR 0.24 TCGA-CD-5813-01 17 40265604 40265604 A G KAT2A 3'UTR 0.41 TCGA-CD-5813-01 17 42397752 42397752 A G SLC25A39 Missense_Mutation p.V285A 0.26 deleterious(0.01) benign(0.032) TCGA-CD-5813-01 17 42857218 42857218 T A ADAM11 3'UTR 0.19 TCGA-CD-5813-01 17 48265261 48265261 G T COL1A1 Silent p.G1115G 0.05 TCGA-CD-5813-01 17 48600347 48600347 C T MYCBPAP Silent p.G478G 0.25 TCGA-CD-5813-01 17 5086827 5086827 T C ZNF594 Missense_Mutation p.N242S 0.30 tolerated(0.26) benign(0.023) TCGA-CD-5813-01 17 66883509 66883510 - T ABCA8 Frame_Shift_Ins p.D1055Rfs*40 0.19 TCGA-CD-5813-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.45 deleterious(0) probably_damaging(0.997) TCGA-CD-5813-01 18 31226286 31226286 C T ASXL3 Silent p.A108A 0.05 TCGA-CD-5813-01 18 31685107 31685107 G C NOL4 Silent p.A144A 0.07 TCGA-CD-5813-01 18 33725918 33725918 C T ELP2 Silent p.V365V 0.08 TCGA-CD-5813-01 18 55270137 55270137 G A NARS Silent p.T430T 0.08 TCGA-CD-5813-01 19 21476317 21476317 C G ZNF708 Missense_Mutation p.S484T 0.10 tolerated(0.06) benign(0.001) TCGA-CD-5813-01 19 42752808 42752808 G A ERF Missense_Mutation p.R486W 0.30 deleterious(0) possibly_damaging(0.876) TCGA-CD-5813-01 19 45540895 45540895 C T RELB Silent p.P529P 0.53 TCGA-CD-5813-01 19 46303761 46303761 G A RSPH6A Missense_Mutation p.S620L 0.10 deleterious(0) possibly_damaging(0.867) TCGA-CD-5813-01 19 48626468 48626468 G A LIG1 Silent p.I704I 0.27 TCGA-CD-5813-01 19 50189487 50189487 C T PRMT1 Silent p.T299T 0.12 TCGA-CD-5813-01 19 52496341 52496341 C T ZNF615 Missense_Mutation p.R674H 0.23 deleterious(0.05) benign(0.059) TCGA-CD-5813-01 19 54304551 54304551 G T NLRP12 Missense_Mutation p.L896M 0.04 deleterious(0) probably_damaging(1) TCGA-CD-5813-01 19 55365487 55365487 A G KIR3DL2 Missense_Mutation p.D214G 0.12 deleterious(0.01) benign(0.085) TCGA-CD-5813-01 19 55493754 55493754 T G NLRP2 Missense_Mutation p.W230G 0.06 deleterious(0) probably_damaging(1) TCGA-CD-5813-01 19 55816953 55816953 C G BRSK1 Missense_Mutation p.S630W 0.17 deleterious(0) probably_damaging(0.972) TCGA-CD-5813-01 19 58213860 58213860 T A ZNF154 Nonsense_Mutation p.R153* 0.12 TCGA-CD-5813-01 1 117297531 117297531 G A CD2 Missense_Mutation p.G114R 0.07 deleterious(0) probably_damaging(1) TCGA-CD-5813-01 1 120457867 120457867 C T NOTCH2 3'UTR 0.36 TCGA-CD-5813-01 1 12336690 12336690 T A VPS13D Missense_Mutation p.D1015E 0.30 possibly_damaging(0.607) TCGA-CD-5813-01 1 12786072 12786072 G C AADACL3 3'Flank 0.15 TCGA-CD-5813-01 1 148932871 148932871 A G RP11-14N7.2 RNA 0.04 TCGA-CD-5813-01 1 150955588 150955588 G C ANXA9 Missense_Mutation p.V3L 0.36 deleterious_low_confidence(0.02) benign(0.047) TCGA-CD-5813-01 1 152187485 152187485 C T HRNR Missense_Mutation p.R2207H 0.09 unknown(0) TCGA-CD-5813-01 1 152281606 152281606 C A FLG Missense_Mutation p.S1919I 0.18 possibly_damaging(0.727) TCGA-CD-5813-01 1 156128511 156128511 A T SEMA4A Missense_Mutation p.E155V 0.11 tolerated(0.11) possibly_damaging(0.533) TCGA-CD-5813-01 1 156452386 156452386 T G MEF2D Missense_Mutation p.E34A 0.07 deleterious(0) possibly_damaging(0.78) TCGA-CD-5813-01 1 158621190 158621190 T C SPTA1 Silent p.G1148G 0.10 TCGA-CD-5813-01 1 164815824 164815824 A G PBX1 Missense_Mutation p.N402D 0.20 deleterious(0) possibly_damaging(0.579) TCGA-CD-5813-01 1 16907317 16907317 T C NBPF1 Missense_Mutation p.D505G 0.02 tolerated(0.06) probably_damaging(0.998) TCGA-CD-5813-01 1 185267078 185267078 T C IVNS1ABP 3'UTR 0.35 TCGA-CD-5813-01 1 186092230 186092230 G A HMCN1 Missense_Mutation p.R4126H 0.30 benign(0.009) TCGA-CD-5813-01 1 201981493 201981501 TCAGTTGGA - ELF3 In_Frame_Del p.S137_I139del 0.29 TCGA-CD-5813-01 1 204125386 204125386 C T REN Missense_Mutation p.G294S 0.07 deleterious(0) probably_damaging(0.996) TCGA-CD-5813-01 1 205210799 205210799 G A TMCC2 Missense_Mutation p.R125H 0.27 tolerated_low_confidence(0.07) possibly_damaging(0.893) TCGA-CD-5813-01 1 21072091 21072091 C T HP1BP3 Missense_Mutation p.E438K 0.16 deleterious_low_confidence(0.02) benign(0.023) TCGA-CD-5813-01 1 22203131 22203131 C A HSPG2 Silent p.G900G 0.23 TCGA-CD-5813-01 1 223958166 223958166 C T CAPN2 Silent p.I614I 0.09 TCGA-CD-5813-01 1 233511747 233511748 - A MLK4 Frame_Shift_Ins p.G590Rfs*14 0.30 TCGA-CD-5813-01 1 233802387 233802387 C T KCNK1 Silent p.C134C 0.24 TCGA-CD-5813-01 1 23419314 23419314 C T LUZP1 Missense_Mutation p.A481T 0.19 deleterious(0.01) probably_damaging(0.997) TCGA-CD-5813-01 1 247587155 247587155 G A NLRP3 Missense_Mutation p.R137H 0.07 tolerated(0.14) benign(0.115) TCGA-CD-5813-01 1 32694410 32694410 A G EIF3I Missense_Mutation p.Y241C 0.04 tolerated(0.09) benign(0.001) TCGA-CD-5813-01 1 40366767 40366767 C A MYCL Missense_Mutation p.A144S 0.50 tolerated(0.77) benign(0.012) TCGA-CD-5813-01 1 70504992 70504992 A T LRRC7 Missense_Mutation p.E1124V 0.16 deleterious(0) possibly_damaging(0.765) TCGA-CD-5813-01 1 7805036 7805036 A T CAMTA1 Missense_Mutation p.S1442C 0.10 deleterious(0) possibly_damaging(0.56) TCGA-CD-5813-01 20 20079326 20079326 A C C20orf26 Missense_Mutation p.S243R 0.07 deleterious(0) probably_damaging(0.946) TCGA-CD-5813-01 20 25657739 25657739 G A ZNF337 Intron 0.36 TCGA-CD-5813-01 20 377208 377208 G C TRIB3 Missense_Mutation p.Q317H 0.08 tolerated(0.08) benign(0.051) TCGA-CD-5813-01 20 43836886 43836886 C G SEMG1 Missense_Mutation p.S316R 0.06 tolerated(0.08) benign(0.015) TCGA-CD-5813-01 21 10996084 10996084 T A TPTE RNA 0.06 TCGA-CD-5813-01 21 15858410 15858410 A G SAMSN1 Silent p.P383P 0.12 TCGA-CD-5813-01 21 37603142 37603142 T A DOPEY2 Missense_Mutation p.I687N 0.06 tolerated(0.15) benign(0.361) TCGA-CD-5813-01 21 46900409 46900409 T C COL18A1 Missense_Mutation p.F656S 0.12 possibly_damaging(0.504) TCGA-CD-5813-01 22 21982820 21982820 C T YDJC Missense_Mutation p.A287T 0.38 tolerated(0.39) possibly_damaging(0.544) TCGA-CD-5813-01 22 25019156 25019156 G A GGT1 Silent p.V272V 0.35 TCGA-CD-5813-01 22 32894361 32894361 G A FBXO7 Silent p.T471T 0.19 TCGA-CD-5813-01 22 42609403 42609403 T G TCF20 Silent p.R637R 0.17 TCGA-CD-5813-01 22 42611293 42611293 G A TCF20 Nonsense_Mutation p.Q7* 0.20 TCGA-CD-5813-01 2 11332458 11332458 G C ROCK2 Missense_Mutation p.L1327V 0.13 deleterious(0.01) possibly_damaging(0.513) TCGA-CD-5813-01 2 113943529 113943529 C A PSD4 Missense_Mutation p.S442Y 0.10 deleterious_low_confidence(0.01) benign(0.03) TCGA-CD-5813-01 2 144966261 144966261 C T GTDC1 Missense_Mutation p.V30I 0.15 tolerated(0.23) benign(0.012) TCGA-CD-5813-01 2 170557915 170557915 A G PHOSPHO2 Missense_Mutation p.N145S 0.13 tolerated(0.94) benign(0.003) TCGA-CD-5813-01 2 179395102 179395102 C G TTN Missense_Mutation p.E35414Q 0.11 TCGA-CD-5813-01 2 179411375 179411375 T G TTN Missense_Mutation p.S31594R 0.10 TCGA-CD-5813-01 2 191069954 191069954 T C HIBCH Silent p.L350L 0.05 TCGA-CD-5813-01 2 197172769 197172769 G A HECW2 Silent p.Y825Y 0.16 TCGA-CD-5813-01 2 212295795 212295795 C T ERBB4 Missense_Mutation p.V840I 0.16 deleterious(0.03) possibly_damaging(0.808) TCGA-CD-5813-01 2 215884365 215884365 G A ABCA12 Silent p.T481T 0.12 TCGA-CD-5813-01 2 231371119 231371119 A C SP100 Missense_Mutation p.S658R 0.12 deleterious(0) probably_damaging(0.975) TCGA-CD-5813-01 2 234622228 234622228 A G UGT1A5 Silent p.L197L 0.12 TCGA-CD-5813-01 2 27278683 27278683 T C AGBL5 Missense_Mutation p.S348P 0.13 tolerated(0.18) benign(0.005) TCGA-CD-5813-01 2 29416542 29416542 C T ALK Missense_Mutation p.V1471M 0.11 tolerated(0.13) benign(0.003) TCGA-CD-5813-01 2 30863490 30863490 A G LCLAT1 3'UTR 0.12 TCGA-CD-5813-01 2 37580008 37580008 G T QPCT Missense_Mutation p.W66L 0.13 deleterious(0.01) benign(0.214) TCGA-CD-5813-01 2 46386767 46386767 A C PRKCE Missense_Mutation p.K648T 0.10 deleterious(0.02) possibly_damaging(0.458) TCGA-CD-5813-01 2 47388867 47388867 T C CALM2 Missense_Mutation p.Y139C 0.13 deleterious_low_confidence(0.02) possibly_damaging(0.664) TCGA-CD-5813-01 3 134514496 134514496 T A EPHB1 Missense_Mutation p.L8Q 0.13 tolerated(0.17) unknown(0) TCGA-CD-5813-01 3 134968251 134968251 G A EPHB1 Missense_Mutation p.A922T 0.22 tolerated(0.1) probably_damaging(0.977) TCGA-CD-5813-01 3 135801212 135801212 G A PPP2R3A Missense_Mutation p.D913N 0.13 deleterious(0.01) probably_damaging(0.997) TCGA-CD-5813-01 3 136062737 136062737 G T STAG1 Missense_Mutation p.P1128H 0.12 tolerated(0.52) benign(0.149) TCGA-CD-5813-01 3 187388055 187388055 C T SST Missense_Mutation p.A9T 0.27 tolerated(0.4) possibly_damaging(0.464) TCGA-CD-5813-01 3 20193869 20193869 C G KAT2B Missense_Mutation p.S784C 0.11 tolerated(0.05) possibly_damaging(0.751) TCGA-CD-5813-01 3 2861193 2861193 A G CNTN4 Missense_Mutation p.T128A 0.12 tolerated(0.48) benign(0.001) TCGA-CD-5813-01 3 405076 405076 T G CHL1 Intron 0.09 TCGA-CD-5813-01 3 42906025 42906025 G A ACKR2 Missense_Mutation p.A11T 0.30 tolerated(1) benign(0.001) TCGA-CD-5813-01 3 49162318 49162318 G A LAMB2 Silent p.D975D 0.23 TCGA-CD-5813-01 3 51749896 51749896 C G GRM2 Missense_Mutation p.P703A 0.12 deleterious(0.02) probably_damaging(1) TCGA-CD-5813-01 3 52613217 52613217 T G PBRM1 Splice_Site p.X1105_splice 0.15 TCGA-CD-5813-01 3 62739191 62739191 C T CADPS Silent p.E271E 0.10 TCGA-CD-5813-01 3 64133178 64133178 T C PRICKLE2 Missense_Mutation p.R330G 0.11 deleterious(0) probably_damaging(0.969) TCGA-CD-5813-01 3 66023967 66023967 T A MAGI1 Missense_Mutation p.Q6L 0.11 tolerated(0.16) benign(0.011) TCGA-CD-5813-01 3 95374503 95374503 T A MTHFD2P1 RNA 0.18 TCGA-CD-5813-01 3 97596094 97596094 G C CRYBG3 Missense_Mutation p.R71T 0.18 tolerated_low_confidence(0.25) benign(0.021) TCGA-CD-5813-01 4 106158510 106158510 T C TET2 Splice_Site p.X1137_splice 0.15 TCGA-CD-5813-01 4 125590479 125590479 G A ANKRD50 Missense_Mutation p.P1318L 0.18 deleterious_low_confidence(0.01) benign(0) TCGA-CD-5813-01 4 2242267 2242267 C G HAUS3 Missense_Mutation p.R136T 0.18 tolerated(0.68) benign(0.008) TCGA-CD-5813-01 4 5564442 5564442 C T EVC2 3'UTR 0.22 TCGA-CD-5813-01 4 57797539 57797539 G T REST Nonsense_Mutation p.E839* 0.13 TCGA-CD-5813-01 5 110091222 110091222 G A SLC25A46 Splice_Site p.X207_splice 0.22 TCGA-CD-5813-01 5 112884712 112884712 T A YTHDC2 Silent p.S561S 0.11 TCGA-CD-5813-01 5 113822818 113822818 G C KCNN2 Missense_Mutation p.K442N 0.26 deleterious(0) possibly_damaging(0.902) TCGA-CD-5813-01 5 141334943 141334943 G A PCDH12 Missense_Mutation p.T825M 0.15 tolerated(0.06) probably_damaging(0.999) TCGA-CD-5813-01 5 167643779 167643779 C T TENM2 Missense_Mutation p.A1362V 0.12 deleterious(0) possibly_damaging(0.802) TCGA-CD-5813-01 5 176941731 176941731 G A DDX41 Silent p.S302S 0.16 TCGA-CD-5813-01 5 19591325 19591325 T C CDH18 Silent p.S280S 0.32 TCGA-CD-5813-01 5 26889953 26889953 G A CDH9 Missense_Mutation p.P502S 0.26 tolerated(0.18) benign(0.003) TCGA-CD-5813-01 5 52285261 52285261 A T ITGA2 5'UTR 0.12 TCGA-CD-5813-01 5 94849310 94849310 C T TTC37 Missense_Mutation p.D915N 0.24 deleterious(0.01) probably_damaging(0.983) TCGA-CD-5813-01 6 10876784 10876784 G T GCM2 Missense_Mutation p.A117E 0.09 tolerated(0.23) benign(0.395) TCGA-CD-5813-01 6 139694948 139694949 - G CITED2 Frame_Shift_Ins p.Q45Pfs*50 0.26 TCGA-CD-5813-01 6 160199606 160199606 T C TCP1 3'UTR 0.20 TCGA-CD-5813-01 6 70049307 70049307 C T BAI3 Missense_Mutation p.R1124C 0.13 deleterious(0) probably_damaging(0.998) TCGA-CD-5813-01 6 83847707 83847707 G C DOPEY1 Missense_Mutation p.E1316Q 0.15 tolerated(0.05) possibly_damaging(0.529) TCGA-CD-5813-01 6 99797102 99797102 A C FAXC Missense_Mutation p.D49E 0.07 tolerated_low_confidence(0.16) benign(0.025) TCGA-CD-5813-01 7 107408210 107408210 C T SLC26A3 Splice_Site p.X735_splice 0.14 TCGA-CD-5813-01 7 115897593 115897593 C G TES 3'UTR 0.16 TCGA-CD-5813-01 7 131172562 131172562 G T MKLN1 3'UTR 0.10 TCGA-CD-5813-01 7 135301844 135301844 G A NUP205 Missense_Mutation p.R1180Q 0.08 tolerated(0.1) probably_damaging(0.986) TCGA-CD-5813-01 7 138269538 138269538 G A TRIM24 Missense_Mutation p.E999K 0.08 deleterious(0.01) benign(0.082) TCGA-CD-5813-01 7 143000938 143000938 C T CASP2 Silent p.C343C 0.29 TCGA-CD-5813-01 7 14775679 14775679 A T DGKB Silent p.A103A 0.11 TCGA-CD-5813-01 7 150066881 150066881 C T REPIN1 Silent p.C27C 0.17 TCGA-CD-5813-01 7 18067043 18067043 C T PRPS1L1 Silent p.A121A 0.26 TCGA-CD-5813-01 7 25176344 25176344 C G C7orf31 Missense_Mutation p.Q340H 0.03 tolerated(0.06) benign(0.027) TCGA-CD-5813-01 7 31815302 31815302 A T PDE1C Missense_Mutation p.S706T 0.15 tolerated_low_confidence(0.09) benign(0.005) TCGA-CD-5813-01 7 43547678 43547678 C T HECW1 Missense_Mutation p.R1272W 0.13 deleterious(0) probably_damaging(0.982) TCGA-CD-5813-01 7 49951740 49951740 C T VWC2 Missense_Mutation p.R313W 0.11 deleterious(0) probably_damaging(0.981) TCGA-CD-5813-01 7 56062651 56062651 G T GBAS Missense_Mutation p.G228W 0.12 deleterious(0) probably_damaging(1) TCGA-CD-5813-01 7 66474641 66474641 A T TYW1 Missense_Mutation p.E115D 0.12 tolerated(1) benign(0.008) TCGA-CD-5813-01 7 74160235 74160235 A T GTF2I Missense_Mutation p.I650F 0.15 tolerated(0.6) benign(0.024) TCGA-CD-5813-01 8 105441868 105441868 C A DPYS Missense_Mutation p.W285C 0.10 deleterious(0.02) probably_damaging(1) TCGA-CD-5813-01 8 106456569 106456569 G A ZFPM2 Silent p.P87P 0.12 TCGA-CD-5813-01 8 110984700 110984700 G A KCNV1 Missense_Mutation p.R260C 0.40 deleterious(0) probably_damaging(0.998) TCGA-CD-5813-01 8 114326985 114326985 A G CSMD3 Silent p.L72L 0.08 TCGA-CD-5813-01 8 55372564 55372564 T C SOX17 3'UTR 0.12 TCGA-CD-5813-01 8 68123821 68123821 A T ARFGEF1 Silent p.I1572I 0.14 TCGA-CD-5813-01 8 68999988 68999988 G A PREX2 Missense_Mutation p.G686E 0.06 deleterious(0) probably_damaging(1) TCGA-CD-5813-01 8 81897177 81897177 C T PAG1 Missense_Mutation p.R237H 0.16 deleterious(0.04) probably_damaging(0.959) TCGA-CD-5813-01 8 95186360 95186360 T A CDH17 Nonsense_Mutation p.K185* 0.07 TCGA-CD-5813-01 8 96166441 96166459 TTGTTTAATGATATTCTTG - PLEKHF2 Frame_Shift_Del p.L57Yfs*34 0.09 TCGA-CD-5813-01 8 97318782 97318782 G A PTDSS1 Silent p.V335V 0.15 TCGA-CD-5813-01 9 105767382 105767382 G C CYLC2 Missense_Mutation p.A157P 0.19 tolerated(0.15) unknown(0) TCGA-CD-5813-01 9 107332160 107332160 T C OR13C8 Missense_Mutation p.F238L 0.03 deleterious(0) probably_damaging(0.998) TCGA-CD-5813-01 9 117786383 117786383 A T TNC Missense_Mutation p.F2122I 0.19 deleterious(0) probably_damaging(0.999) TCGA-CD-5813-01 9 127733666 127733666 T G SCAI Missense_Mutation p.M576L 0.15 tolerated(1) benign(0.002) TCGA-CD-5813-01 9 131009658 131009658 G A DNM1 Missense_Mutation p.V596I 0.18 tolerated(0.15) benign(0.277) TCGA-CD-5813-01 9 18777842 18777842 C T ADAMTSL1 Silent p.I1205I 0.25 TCGA-CD-5813-01 9 19371865 19371865 T A DENND4C Intron 0.24 TCGA-CD-5813-01 9 33675610 33675610 A T PTENP1 RNA 0.20 TCGA-CD-5813-01 9 5763255 5763255 G C KIAA1432 Missense_Mutation p.G743A 0.04 tolerated(1) benign(0.005) TCGA-CD-5813-01 9 77397699 77397699 G A TRPM6 Missense_Mutation p.A997V 0.21 deleterious(0) probably_damaging(0.98) TCGA-CD-5813-01 X 111698562 111698562 G T ZCCHC16 Missense_Mutation p.M202I 0.04 tolerated(0.13) benign(0.027) TCGA-CD-5813-01 X 118221772 118221772 G A KIAA1210 Missense_Mutation p.R1141W 0.60 deleterious(0) possibly_damaging(0.715) TCGA-CD-5813-01 X 119760150 119760150 T C C1GALT1C1 Missense_Mutation p.Y291C 0.05 deleterious(0) probably_damaging(0.998) TCGA-CD-5813-01 X 123019704 123019704 T G XIAP Missense_Mutation p.F64L 0.04 deleterious(0) probably_damaging(1) TCGA-CD-5813-01 X 148627428 148627428 G A CXorf40A Silent p.A84A 0.49 TCGA-CD-5813-01 X 15315756 15315756 G T ASB11 Missense_Mutation p.H103Q 0.16 deleterious(0) probably_damaging(0.999) TCGA-CD-5813-01 X 153594996 153594996 G A FLNA Silent p.T333T 0.22 TCGA-CD-5813-01 X 22050995 22050995 C T PHEX 5'UTR 0.56 TCGA-CD-5813-01 X 3238447 3238447 C A MXRA5 Missense_Mutation p.R1760I 0.30 deleterious(0.01) possibly_damaging(0.73) TCGA-CD-8524-01 10 108923823 108923823 C A SORCS1 Silent p.R154R 0.27 TCGA-CD-8524-01 10 48413661 48413661 C T GDF2 Missense_Mutation p.V403I 0.28 tolerated(1) benign(0.005) TCGA-CD-8524-01 10 49635141 49635141 G A MAPK8 Missense_Mutation p.D339N 0.20 deleterious(0.03) benign(0.013) TCGA-CD-8524-01 10 5567124 5567124 G A CALML3 Missense_Mutation p.G26S 0.24 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-CD-8524-01 10 73521515 73521515 G A C10orf54 Silent p.H117H 0.38 TCGA-CD-8524-01 10 77795865 77795865 G C C10orf11 Silent p.L49L 0.06 TCGA-CD-8524-01 10 81146112 81146112 G A ZCCHC24 Missense_Mutation p.R239C 0.41 deleterious(0) probably_damaging(0.993) TCGA-CD-8524-01 10 83635660 83635660 G A NRG3 Silent p.A188A 0.23 TCGA-CD-8524-01 10 89118032 89118032 G A NUTM2D Missense_Mutation p.E4K 0.10 tolerated_low_confidence(0.09) benign(0) TCGA-CD-8524-01 11 102395690 102395690 C T MMP7 Missense_Mutation p.R197H 0.22 tolerated(0.36) benign(0.004) TCGA-CD-8524-01 11 112070509 112070509 C T BCO2 Missense_Mutation p.A275V 0.29 tolerated(0.16) benign(0.042) TCGA-CD-8524-01 11 27148884 27148884 C G BBOX1 Missense_Mutation p.R350G 0.12 tolerated(0.29) benign(0.081) TCGA-CD-8524-01 11 49974634 49974634 G T OR4C13 Silent p.L220L 0.10 TCGA-CD-8524-01 11 50003129 50003129 T - OR4C12 Frame_Shift_Del p.V304* 0.16 TCGA-CD-8524-01 11 57099148 57099148 A G SSRP1 Missense_Mutation p.I406T 0.09 deleterious(0) probably_damaging(0.978) TCGA-CD-8524-01 11 58206946 58206946 G A OR5B12 Missense_Mutation p.R227C 0.09 deleterious_low_confidence(0.03) benign(0.061) TCGA-CD-8524-01 11 64876186 64876186 C T VPS51 Missense_Mutation p.R415W 0.33 deleterious(0) benign(0.316) TCGA-CD-8524-01 11 77667074 77667074 G A INTS4 Missense_Mutation p.R278C 0.09 deleterious(0) benign(0.003) TCGA-CD-8524-01 11 88961040 88961040 G A TYR Missense_Mutation p.M362I 0.12 deleterious(0.01) benign(0.338) TCGA-CD-8524-01 12 104083726 104083726 T C STAB2 Missense_Mutation p.W1050R 0.05 deleterious(0) probably_damaging(1) TCGA-CD-8524-01 12 123011423 123011423 A G RSRC2 5'UTR 0.08 TCGA-CD-8524-01 12 129558338 129558338 C T TMEM132D 3'UTR 0.18 TCGA-CD-8524-01 12 27841317 27841317 G A PPFIBP1 Silent p.A825A 0.82 TCGA-CD-8524-01 12 53495871 53495871 G A IGFBP6 Missense_Mutation p.V215M 0.15 deleterious(0) probably_damaging(1) TCGA-CD-8524-01 12 75693618 75693618 G A CAPS2 Missense_Mutation p.R304C 0.11 deleterious(0) probably_damaging(0.999) TCGA-CD-8524-01 12 78401201 78401201 C T NAV3 Missense_Mutation p.A628V 0.24 deleterious(0) probably_damaging(0.999) TCGA-CD-8524-01 12 78513089 78513089 C A NAV3 Missense_Mutation p.P1038H 0.15 deleterious(0) probably_damaging(1) TCGA-CD-8524-01 12 80623065 80623065 C T OTOGL Missense_Mutation p.S164L 0.10 deleterious(0) possibly_damaging(0.859) TCGA-CD-8524-01 12 91347392 91347392 C A CCER1 Missense_Mutation p.E376D 0.11 deleterious(0.04) unknown(0) TCGA-CD-8524-01 13 23777913 23777913 G T SGCG Missense_Mutation p.G27V 0.13 deleterious(0) probably_damaging(1) TCGA-CD-8524-01 13 78477310 78477310 T G EDNRB Missense_Mutation p.Q351P 0.30 tolerated(0.11) probably_damaging(0.921) TCGA-CD-8524-01 13 96416105 96416105 G A DNAJC3 Missense_Mutation p.A325T 0.26 deleterious(0) probably_damaging(0.993) TCGA-CD-8524-01 14 105643099 105643099 G A NUDT14 Missense_Mutation p.A67V 0.25 tolerated(0.5) benign(0.028) TCGA-CD-8524-01 15 25448397 25448397 T G SNORD115-18 RNA 0.13 TCGA-CD-8524-01 15 39879632 39879632 G A THBS1 Missense_Mutation p.R402H 0.25 deleterious(0) probably_damaging(0.993) TCGA-CD-8524-01 15 65054696 65054696 G A RBPMS2 Intron 0.12 TCGA-CD-8524-01 15 67664965 67664965 C - IQCH Frame_Shift_Del p.Q424Rfs*34 0.25 TCGA-CD-8524-01 15 89401508 89401508 C T ACAN Missense_Mutation p.P1898S 0.42 tolerated(0.13) possibly_damaging(0.685) TCGA-CD-8524-01 16 19083427 19083427 A G COQ7 Missense_Mutation p.Q84R 0.14 tolerated(0.09) benign(0.02) TCGA-CD-8524-01 16 87678214 87678214 C T JPH3 Missense_Mutation p.R245C 0.26 tolerated(0.22) benign(0.063) TCGA-CD-8524-01 17 10399670 10399670 A G MYH1 Missense_Mutation p.L1618P 0.06 deleterious(0) possibly_damaging(0.547) TCGA-CD-8524-01 17 10545981 10545981 G A MYH3 Silent p.T547T 0.29 TCGA-CD-8524-01 17 35872423 35872423 C T DUSP14 Missense_Mutation p.R17W 0.18 deleterious(0.02) possibly_damaging(0.838) TCGA-CD-8524-01 17 36495312 36495312 G A GPR179 Silent p.L297L 0.24 TCGA-CD-8524-01 17 43192475 43192475 G T PLCD3 Silent p.L565L 0.62 TCGA-CD-8524-01 17 4389628 4389628 C T SPNS3 Intron 0.32 TCGA-CD-8524-01 17 45916181 45916181 G A SCRN2 Missense_Mutation p.R250W 0.12 deleterious(0.05) benign(0.013) TCGA-CD-8524-01 17 73227457 73227457 T C NUP85 Missense_Mutation p.F373L 0.54 tolerated(0.06) possibly_damaging(0.51) TCGA-CD-8524-01 17 73838569 73838569 G A UNC13D Missense_Mutation p.R172C 0.16 deleterious(0.02) probably_damaging(0.99) TCGA-CD-8524-01 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.19 TCGA-CD-8524-01 17 76677070 76677070 C T CYTH1 Missense_Mutation p.E316K 0.42 tolerated(0.09) benign(0.143) TCGA-CD-8524-01 17 80209374 80209374 G A CSNK1D Missense_Mutation p.R256C 0.41 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CD-8524-01 17 80789023 80789023 C T ZNF750 Silent p.K436K 0.38 TCGA-CD-8524-01 17 8526399 8526399 C T MYH10 Missense_Mutation p.D56N 0.12 benign(0.282) TCGA-CD-8524-01 18 14542980 14542980 T C POTEC Missense_Mutation p.M56V 0.07 tolerated_low_confidence(0.07) benign(0) TCGA-CD-8524-01 18 21422634 21422634 G A LAMA3 Missense_Mutation p.E1175K 0.37 benign(0.024) TCGA-CD-8524-01 18 44561290 44561290 C T TCEB3B Missense_Mutation p.A116T 0.23 tolerated(0.38) benign(0.039) TCGA-CD-8524-01 19 34891066 34891066 G A GPI 3'UTR 0.47 TCGA-CD-8524-01 19 36501774 36501774 C T ALKBH6 Intron 0.47 TCGA-CD-8524-01 19 39998929 39998929 G A DLL3 3'UTR 0.12 TCGA-CD-8524-01 19 40900469 40900469 G T PRX Missense_Mutation p.Q1264K 0.53 tolerated(0.95) benign(0.092) TCGA-CD-8524-01 19 44590963 44590963 G T ZNF284 Missense_Mutation p.L444F 0.39 tolerated(0.45) benign(0.002) TCGA-CD-8524-01 19 52448840 52448840 T G ZNF613 Silent p.S568S 0.08 TCGA-CD-8524-01 19 52955230 52955230 A G ZNF578 5'Flank 0.16 TCGA-CD-8524-01 19 53158840 53158843 TCCA CCCCT CTD-3099C6.9 5'Flank 0.08 TCGA-CD-8524-01 19 54818722 54818722 G C LILRA5 Missense_Mutation p.S292R 0.08 tolerated(1) benign(0.005) TCGA-CD-8524-01 19 54930476 54930476 G A TTYH1 Missense_Mutation p.G101S 0.56 tolerated(0.21) benign(0.069) TCGA-CD-8524-01 19 56041244 56041244 G A SBK2 Silent p.D301D 0.47 TCGA-CD-8524-01 19 58989053 58989053 C G ZNF446 Missense_Mutation p.T131R 0.46 deleterious(0.02) possibly_damaging(0.514) TCGA-CD-8524-01 19 8808509 8808509 C T ACTL9 Silent p.S181S 0.17 TCGA-CD-8524-01 19 9015690 9015690 C T MUC16 Silent p.K12711K 0.31 TCGA-CD-8524-01 1 114682479 114682479 G C SYT6 Missense_Mutation p.N5K 0.16 tolerated_low_confidence(0.15) benign(0.04) TCGA-CD-8524-01 1 150900360 150900360 G A SETDB1 Missense_Mutation p.R57H 0.12 deleterious_low_confidence(0) possibly_damaging(0.814) TCGA-CD-8524-01 1 150900361 150900361 C A SETDB1 Silent p.R57R 0.12 TCGA-CD-8524-01 1 152080373 152080373 G A TCHH Missense_Mutation p.R1774C 0.06 unknown(0) TCGA-CD-8524-01 1 154940987 154940987 G T SHC1 Missense_Mutation p.A245D 0.04 deleterious(0.02) benign(0.122) TCGA-CD-8524-01 1 154965049 154965054 ATACCA - FLAD1 Intron 0.11 TCGA-CD-8524-01 1 156106743 156106743 G A LMNA Missense_Mutation p.R471H 0.15 deleterious(0) probably_damaging(0.996) TCGA-CD-8524-01 1 158368662 158368662 C A OR10T2 Missense_Mutation p.A199S 0.38 deleterious(0.03) benign(0.111) TCGA-CD-8524-01 1 167847720 167847720 C A ADCY10 Missense_Mutation p.G457V 0.07 deleterious(0) probably_damaging(0.997) TCGA-CD-8524-01 1 169762816 169762816 G A METTL18 Silent p.F7F 0.09 TCGA-CD-8524-01 1 176926896 176926896 C T ASTN1 Missense_Mutation p.R602H 0.14 deleterious(0) probably_damaging(0.997) TCGA-CD-8524-01 1 230472930 230472930 C T PGBD5 Silent p.A264A 0.26 TCGA-CD-8524-01 1 237586436 237586436 G A RYR2 Missense_Mutation p.R298H 0.24 probably_damaging(0.973) TCGA-CD-8524-01 1 237947447 237947447 C A RYR2 Silent p.I4145I 0.12 TCGA-CD-8524-01 1 23954373 23954373 C A MDS2 5'UTR 0.14 TCGA-CD-8524-01 1 244869133 244869133 G A DESI2 3'UTR 0.24 TCGA-CD-8524-01 1 248367138 248367138 T G OR2M3 Missense_Mutation p.F257V 0.12 deleterious(0.03) probably_damaging(0.994) TCGA-CD-8524-01 1 34008458 34008458 G A CSMD2 Nonsense_Mutation p.R2903* 0.46 TCGA-CD-8524-01 1 39500125 39500125 C G NDUFS5 Missense_Mutation p.T93S 0.15 deleterious(0.03) benign(0.299) TCGA-CD-8524-01 20 44519149 44519149 C T NEURL2 Missense_Mutation p.G161D 0.17 deleterious(0.02) possibly_damaging(0.496) TCGA-CD-8524-01 20 62421650 62421650 G A ZBTB46 Missense_Mutation p.T154M 0.17 tolerated(0.12) possibly_damaging(0.479) TCGA-CD-8524-01 21 10862918 10862918 C T IGHV1OR21-1 Missense_Mutation p.P72S 0.06 deleterious(0.04) possibly_damaging(0.602) TCGA-CD-8524-01 21 34399314 34399314 G A OLIG2 Silent p.P48P 0.32 TCGA-CD-8524-01 22 24135750 24135750 C T SMARCB1 Silent p.H79H 0.08 TCGA-CD-8524-01 22 37770469 37770469 C T ELFN2 Missense_Mutation p.R369H 0.09 tolerated(0.23) benign(0.086) TCGA-CD-8524-01 2 11800223 11800223 G A NTSR2 Missense_Mutation p.P312L 0.19 deleterious(0.05) benign(0.378) TCGA-CD-8524-01 2 141243057 141243057 C T LRP1B Missense_Mutation p.V3094I 0.31 benign(0.299) TCGA-CD-8524-01 2 155115621 155115621 G A GALNT13 Nonsense_Mutation p.W315* 0.31 TCGA-CD-8524-01 2 166848014 166848014 C T SCN1A Missense_Mutation p.R1924H 0.30 deleterious(0) benign(0.098) TCGA-CD-8524-01 2 179473038 179473038 C G TTN Silent p.L17524L 0.16 TCGA-CD-8524-01 2 179482698 179482698 C T TTN Missense_Mutation p.V15794I 0.08 TCGA-CD-8524-01 2 179640548 179640548 C T TTN Missense_Mutation p.A2015T 0.36 TCGA-CD-8524-01 2 183826989 183826989 A C NCKAP1 Missense_Mutation p.D599E 0.08 tolerated(1) benign(0.064) TCGA-CD-8524-01 2 208030393 208030393 C A KLF7 5'UTR 0.31 TCGA-CD-8524-01 2 212251665 212251665 G A ERBB4 Missense_Mutation p.P1132S 0.18 deleterious(0.01) probably_damaging(1) TCGA-CD-8524-01 2 217297484 217297484 A G SMARCAL1 Missense_Mutation p.M460V 0.16 deleterious(0.02) probably_damaging(0.999) TCGA-CD-8524-01 2 220162661 220162661 G A PTPRN Silent p.R611R 0.44 TCGA-CD-8524-01 2 234545590 234545590 C A UGT1A10 Missense_Mutation p.S141Y 0.38 deleterious(0.03) probably_damaging(0.934) TCGA-CD-8524-01 2 239049766 239049766 G A KLHL30 Missense_Mutation p.R124H 0.29 deleterious(0.01) probably_damaging(1) TCGA-CD-8524-01 2 27598553 27598553 C T SNX17 Nonsense_Mutation p.R319* 0.10 TCGA-CD-8524-01 2 33589410 33589410 G A LTBP1 Silent p.P1509P 0.15 TCGA-CD-8524-01 2 54120866 54120874 AATGATAGA - PSME4 In_Frame_Del p.F1325_S1327del 0.26 TCGA-CD-8524-01 2 61259050 61259050 C T PEX13 Missense_Mutation p.R197W 0.23 tolerated(0.23) benign(0.001) TCGA-CD-8524-01 2 97368346 97368346 C A LMAN2L 3'Flank 0.25 TCGA-CD-8524-01 3 101062557 101062557 T G SENP7 Missense_Mutation p.E693D 0.16 tolerated(0.22) benign(0.089) TCGA-CD-8524-01 3 127785877 127785877 G A SEC61A1 Silent p.T286T 0.15 TCGA-CD-8524-01 3 127785925 127785925 T C SEC61A1 Silent p.Y302Y 0.06 TCGA-CD-8524-01 3 139067023 139067023 G A MRPS22 Missense_Mutation p.A121T 0.12 tolerated(0.54) possibly_damaging(0.593) TCGA-CD-8524-01 3 38651357 38651357 C T SCN5A Missense_Mutation p.G268S 0.15 deleterious(0) probably_damaging(1) TCGA-CD-8524-01 3 51749144 51749144 G A GRM2 Missense_Mutation p.R452H 0.17 deleterious(0.01) probably_damaging(0.934) TCGA-CD-8524-01 3 52946639 52946639 C T SFMBT1 Missense_Mutation p.A549T 0.21 deleterious(0) probably_damaging(0.999) TCGA-CD-8524-01 4 109841761 109841761 C T COL25A1 Splice_Site p.X237_splice 0.21 TCGA-CD-8524-01 4 110437729 110437729 T A SEC24B Missense_Mutation p.S687T 0.21 deleterious(0.03) possibly_damaging(0.755) TCGA-CD-8524-01 4 121966864 121966864 C T NDNF Silent p.S43S 0.14 TCGA-CD-8524-01 4 122853759 122853759 G A TRPC3 Silent p.D218D 0.18 TCGA-CD-8524-01 4 134072543 134072543 T A PCDH10 Silent p.V416V 0.15 TCGA-CD-8524-01 4 134073243 134073243 C A PCDH10 Missense_Mutation p.P650T 0.16 tolerated(0.17) probably_damaging(0.932) TCGA-CD-8524-01 4 156849542 156849542 T C CTSO Missense_Mutation p.S293G 0.12 tolerated(0.21) benign(0.158) TCGA-CD-8524-01 4 178231192 178231192 G A NEIL3 Missense_Mutation p.G29R 0.38 deleterious(0) probably_damaging(0.988) TCGA-CD-8524-01 4 184240855 184240855 C T CLDN22 Missense_Mutation p.G173R 0.16 deleterious(0) probably_damaging(1) TCGA-CD-8524-01 4 38799339 38799339 T C TLR1 Missense_Mutation p.T372A 0.09 tolerated(0.79) benign(0.004) TCGA-CD-8524-01 4 57873014 57873014 T A POLR2B Missense_Mutation p.I417N 0.18 tolerated(0.29) benign(0.197) TCGA-CD-8524-01 4 60009 60009 C A ZNF595 Nonsense_Mutation p.C63* 0.07 TCGA-CD-8524-01 4 619713 619713 C T PDE6B Missense_Mutation p.R100C 0.46 deleterious(0.02) probably_damaging(1) TCGA-CD-8524-01 4 780405 780405 G A CPLX1 Missense_Mutation p.P97S 0.17 deleterious(0) probably_damaging(0.999) TCGA-CD-8524-01 4 89912232 89912232 C T FAM13A Missense_Mutation p.C166Y 0.15 deleterious(0.04) possibly_damaging(0.697) TCGA-CD-8524-01 5 113699632 113699632 C A KCNN2 Nonsense_Mutation p.C172* 0.28 TCGA-CD-8524-01 5 114513323 114513323 G A TRIM36 Intron 0.30 TCGA-CD-8524-01 5 126754837 126754837 C G MEGF10 Missense_Mutation p.P444R 0.08 deleterious(0.02) benign(0.023) TCGA-CD-8524-01 5 135391437 135391437 G A TGFBI Silent p.T493T 0.29 TCGA-CD-8524-01 5 140256590 140256590 C T PCDHA12 Silent p.H511H 0.14 TCGA-CD-8524-01 5 140308104 140308104 T G PCDHAC1 Missense_Mutation p.L543V 0.32 tolerated(1) benign(0.032) TCGA-CD-8524-01 5 140475135 140475135 C T PCDHB2 Missense_Mutation p.P254L 0.43 tolerated_low_confidence(0.27) benign(0.027) TCGA-CD-8524-01 5 145719186 145719186 G A POU4F3 Missense_Mutation p.V66I 0.30 deleterious(0.04) benign(0.2) TCGA-CD-8524-01 5 79355588 79355588 C A THBS4 Missense_Mutation p.P283T 0.30 tolerated(0.23) benign(0.022) TCGA-CD-8524-01 6 101076966 101076966 C A ASCC3 Missense_Mutation p.V1434F 0.27 deleterious(0) possibly_damaging(0.698) TCGA-CD-8524-01 6 110048334 110048334 C G FIG4 Silent p.G104G 0.12 TCGA-CD-8524-01 6 127796462 127796462 G A SOGA3 Silent p.A903A 0.07 TCGA-CD-8524-01 6 143092978 143092978 G C HIVEP2 Missense_Mutation p.S966R 0.38 deleterious(0) probably_damaging(0.997) TCGA-CD-8524-01 6 144508051 144508051 G A STX11 Missense_Mutation p.R96Q 0.20 deleterious(0) probably_damaging(0.919) TCGA-CD-8524-01 6 161512447 161512447 G A MAP3K4 Missense_Mutation p.A1004T 0.36 tolerated(0.08) benign(0.023) TCGA-CD-8524-01 6 26285677 26285677 C A HIST1H4H Missense_Mutation p.K17N 0.17 deleterious(0) benign(0.067) TCGA-CD-8524-01 6 29012625 29012625 C T OR2W1 Missense_Mutation p.V110I 0.10 tolerated(0.11) benign(0.001) TCGA-CD-8524-01 6 42995125 42995125 C T RRP36 Nonsense_Mutation p.R185* 0.12 TCGA-CD-8524-01 6 46190976 46190976 C T RCAN2 Missense_Mutation p.D212N 0.54 deleterious(0.01) probably_damaging(0.997) TCGA-CD-8524-01 6 46675819 46675820 - A PLA2G7 Frame_Shift_Ins p.I317Yfs*4 0.09 TCGA-CD-8524-01 6 51913367 51913367 G A PKHD1 Missense_Mutation p.T777M 0.12 deleterious(0.02) benign(0.189) TCGA-CD-8524-01 6 62611271 62611271 G T KHDRBS2 Nonsense_Mutation p.Y163* 0.10 TCGA-CD-8524-01 6 75968636 75968636 C T TMEM30A Missense_Mutation p.G251E 0.20 deleterious(0) probably_damaging(1) TCGA-CD-8524-01 7 142032478 142032478 C T TRBV7-1 Missense_Mutation p.R100C 0.45 deleterious(0.01) benign(0.021) TCGA-CD-8524-01 7 150557647 150557647 C T AOC1 Missense_Mutation p.H639Y 0.29 deleterious(0.01) benign(0.106) TCGA-CD-8524-01 7 31682400 31682400 G A CCDC129 Silent p.S498S 0.34 TCGA-CD-8524-01 7 4188957 4188957 G A SDK1 Missense_Mutation p.R1496Q 0.50 tolerated(0.61) benign(0.009) TCGA-CD-8524-01 7 50737431 50737431 G A GRB10 Silent p.A164A 0.20 TCGA-CD-8524-01 7 5327609 5327609 G A SLC29A4 Silent p.T54T 0.37 TCGA-CD-8524-01 7 90895618 90895618 G A FZD1 Missense_Mutation p.G475R 0.17 deleterious(0) probably_damaging(1) TCGA-CD-8524-01 8 124371477 124371477 T C ATAD2 Missense_Mutation p.K456E 0.15 deleterious(0) benign(0.04) TCGA-CD-8524-01 8 15480610 15480610 G T TUSC3 Nonsense_Mutation p.E54* 0.12 TCGA-CD-8524-01 8 26721669 26721669 G A ADRA1A Missense_Mutation p.T273M 0.16 deleterious(0.02) probably_damaging(0.994) TCGA-CD-8524-01 8 28206254 28206254 G A ZNF395 Silent p.C508C 0.14 TCGA-CD-8524-01 8 35588560 35588560 T A UNC5D Missense_Mutation p.I571N 0.16 deleterious(0) probably_damaging(0.977) TCGA-CD-8524-01 8 3855478 3855478 T C CSMD1 Silent p.L255L 0.21 TCGA-CD-8524-01 8 40554921 40554921 C T ZMAT4 Splice_Site p.X65_splice 0.29 TCGA-CD-8524-01 8 51571221 51571221 A T SNTG1 Nonsense_Mutation p.K346* 0.12 TCGA-CD-8524-01 8 57876548 57876549 - G IMPAD1 Frame_Shift_Ins p.Y295Sfs*11 0.14 TCGA-CD-8524-01 8 59484832 59484832 C T SDCBP Missense_Mutation p.R67C 0.12 tolerated(0.05) benign(0) TCGA-CD-8524-01 8 67040664 67040664 C A TRIM55 Missense_Mutation p.N98K 0.12 deleterious(0) probably_damaging(0.985) TCGA-CD-8524-01 8 69621266 69621266 T C C8orf34 Missense_Mutation p.S427P 0.13 tolerated(0.26) benign(0.001) TCGA-CD-8524-01 8 71646321 71646321 T C XKR9 Silent p.L262L 0.17 TCGA-CD-8524-01 9 120053656 120053656 C A ASTN2 Missense_Mutation p.E193D 0.10 tolerated_low_confidence(0.29) benign(0.388) TCGA-CD-8524-01 9 120475046 120475046 C G TLR4 Missense_Mutation p.P214A 0.12 tolerated(0.1) benign(0.422) TCGA-CD-8524-01 9 127298387 127298387 T C NR6A1 Silent p.L283L 0.12 TCGA-CD-8524-01 9 130587127 130587127 C T ENG Missense_Mutation p.V315M 0.29 deleterious(0.02) possibly_damaging(0.878) TCGA-CD-8524-01 9 135205035 135205035 C A SETX Missense_Mutation p.M650I 0.18 tolerated(0.33) benign(0.002) TCGA-CD-8524-01 9 138683644 138683644 C T KCNT1 Silent p.D1168D 0.21 TCGA-CD-8524-01 9 16435946 16435946 C T BNC2 Missense_Mutation p.S749N 0.40 tolerated(0.5) benign(0) TCGA-CD-8524-01 9 16436469 16436469 T G BNC2 Missense_Mutation p.S575R 0.51 deleterious(0) benign(0.155) TCGA-CD-8524-01 9 72131493 72131493 C T APBA1 Missense_Mutation p.G212S 0.31 tolerated_low_confidence(0.17) benign(0.044) TCGA-CD-8524-01 X 111195328 111195328 T G TRPC5 Missense_Mutation p.E107D 0.20 deleterious(0.02) probably_damaging(0.957) TCGA-CD-8524-01 X 120008778 120008778 C T CT47B1 Silent p.P249P 0.39 TCGA-CD-8524-01 X 124030034 124030034 G T TENM1 Missense_Mutation p.H92N 0.19 tolerated_low_confidence(0.75) probably_damaging(0.954) TCGA-CD-8524-01 X 14891593 14891593 G T MOSPD2 5'UTR 0.31 TCGA-CD-8524-01 X 22244602 22244602 G T PHEX Nonsense_Mutation p.G648* 0.13 TCGA-CD-8524-01 X 32490330 32490330 A C DMD Missense_Mutation p.L967R 0.24 benign(0.241) TCGA-CD-8524-01 X 76939922 76939922 A C ATRX Missense_Mutation p.L276V 0.42 probably_damaging(0.948) TCGA-CD-8524-01 X 9864517 9864517 G A SHROOM2 Missense_Mutation p.A857T 0.19 tolerated(0.54) benign(0) TCGA-CD-8525-01 10 61432672 61432672 C A SLC16A9 Splice_Site p.X66_splice 0.26 TCGA-CD-8525-01 10 7745363 7745363 C G ITIH2 5'UTR 0.09 TCGA-CD-8525-01 10 93021088 93021088 A - PCGF5 Frame_Shift_Del p.M161* 0.21 TCGA-CD-8525-01 11 102482570 102482570 G T MMP20 Missense_Mutation p.Q147K 0.12 tolerated(1) benign(0.004) TCGA-CD-8525-01 11 116719989 116719989 T G SIK3 Silent p.I1116I 0.07 TCGA-CD-8525-01 11 125891151 125891151 G A CDON Missense_Mutation p.S114F 0.28 deleterious(0) probably_damaging(0.992) TCGA-CD-8525-01 11 18637507 18637507 G C SPTY2D1 Nonsense_Mutation p.S105* 0.11 TCGA-CD-8525-01 11 193135 193135 C T SCGB1C1 Silent p.L12L 0.13 TCGA-CD-8525-01 11 47819349 47819349 G A NUP160 Missense_Mutation p.R1091C 0.26 deleterious(0) probably_damaging(1) TCGA-CD-8525-01 11 6806527 6806527 C T OR2AG1 Missense_Mutation p.R87C 0.32 tolerated(0.18) benign(0.001) TCGA-CD-8525-01 12 100042226 100042226 G T FAM71C Missense_Mutation p.A92S 0.23 tolerated(0.11) benign(0.271) TCGA-CD-8525-01 12 116424993 116424993 C T MED13L Silent p.R1345R 0.14 TCGA-CD-8525-01 12 58114598 58114598 G A OS9 Missense_Mutation p.R637H 0.14 deleterious(0) benign(0.014) TCGA-CD-8525-01 12 69080747 69080747 G A NUP107 5'UTR 0.07 TCGA-CD-8525-01 13 36764191 36764191 G C SOHLH2 Missense_Mutation p.S255C 0.21 deleterious(0.01) possibly_damaging(0.571) TCGA-CD-8525-01 13 37598543 37598543 C G SUPT20H Missense_Mutation p.G456R 0.38 deleterious(0) benign(0.318) TCGA-CD-8525-01 13 46656606 46656606 C T CPB2 Silent p.S118S 0.23 TCGA-CD-8525-01 14 106090871 106090871 T A IGHG4 Missense_Mutation p.H309L 0.13 deleterious(0) probably_damaging(1) TCGA-CD-8525-01 14 50472554 50472554 C G C14orf182 5'UTR 0.11 TCGA-CD-8525-01 14 76368562 76368562 C G TTLL5 Missense_Mutation p.S1273C 0.15 deleterious_low_confidence(0) possibly_damaging(0.627) TCGA-CD-8525-01 14 78217691 78217691 T C SNW1 Missense_Mutation p.I101V 0.10 tolerated(0.12) benign(0.078) TCGA-CD-8525-01 14 99182681 99182681 A G C14orf177 Silent p.R51R 0.13 TCGA-CD-8525-01 15 101170193 101170193 A G ASB7 Missense_Mutation p.I255V 0.19 tolerated(1) benign(0) TCGA-CD-8525-01 15 31776753 31776753 G A OTUD7A Missense_Mutation p.R509C 0.20 deleterious(0) probably_damaging(0.995) TCGA-CD-8525-01 15 41192978 41192978 C T VPS18 Silent p.N654N 0.14 TCGA-CD-8525-01 16 15732982 15732982 G A KIAA0430 Missense_Mutation p.R37C 0.27 tolerated_low_confidence(0.06) possibly_damaging(0.683) TCGA-CD-8525-01 16 22441254 22441254 G T RRN3P3 RNA 0.27 TCGA-CD-8525-01 16 28926046 28926046 C T RABEP2 Missense_Mutation p.E164K 0.30 tolerated(0.23) benign(0.141) TCGA-CD-8525-01 16 83998836 83998836 T G OSGIN1 Missense_Mutation p.F220V 0.25 deleterious(0.01) probably_damaging(0.993) TCGA-CD-8525-01 16 86544645 86544645 T C FOXF1 Missense_Mutation p.M157T 0.41 deleterious(0) possibly_damaging(0.552) TCGA-CD-8525-01 17 38954574 38954574 G A KRT28 Silent p.D201D 0.12 TCGA-CD-8525-01 17 39670836 39670836 G A KRT15 Intron 0.12 TCGA-CD-8525-01 17 40094927 40094927 G C TTC25 RNA 0.17 TCGA-CD-8525-01 17 7578190 7578190 T C TP53 Missense_Mutation p.Y220C 0.54 deleterious(0) probably_damaging(1) TCGA-CD-8525-01 17 79650863 79650863 T G ARL16 5'UTR 0.27 TCGA-CD-8525-01 18 72173101 72173101 G C CNDP2 Missense_Mutation p.E74D 0.26 tolerated(0.29) benign(0) TCGA-CD-8525-01 19 18871039 18871039 G A CRTC1 Splice_Site p.X312_splice 0.33 TCGA-CD-8525-01 19 19645850 19645850 C T YJEFN3 Missense_Mutation p.P109L 0.24 deleterious(0) probably_damaging(1) TCGA-CD-8525-01 19 33369962 33369962 G A CEP89 3'UTR 0.12 TCGA-CD-8525-01 19 44680182 44680182 A G ZNF226 Missense_Mutation p.E256G 0.12 tolerated(0.08) benign(0.006) TCGA-CD-8525-01 19 48305321 48305321 G A TPRX1 Missense_Mutation p.S316L 0.24 tolerated(0.73) possibly_damaging(0.504) TCGA-CD-8525-01 19 54210785 54210785 C T MIR520C RNA 0.44 TCGA-CD-8525-01 19 54802685 54802685 G A LILRA3 Silent p.Y252Y 0.34 TCGA-CD-8525-01 19 5694792 5694792 G A LONP1 Silent p.L712L 0.36 TCGA-CD-8525-01 1 120438121 120438121 T A ADAM30 Missense_Mutation p.K280I 0.17 deleterious(0) possibly_damaging(0.806) TCGA-CD-8525-01 1 151994936 151994936 G A NBPF18P RNA 0.18 TCGA-CD-8525-01 1 173931083 173931083 T C RC3H1 Missense_Mutation p.Q661R 0.27 tolerated(0.31) benign(0.043) TCGA-CD-8525-01 1 236902782 236902782 C T ACTN2 Missense_Mutation p.R353W 0.17 deleterious(0) probably_damaging(0.932) TCGA-CD-8525-01 1 248112505 248112505 T G OR2L8 Missense_Mutation p.S116A 0.12 tolerated(0.67) benign(0.01) TCGA-CD-8525-01 1 248402353 248402353 A C OR2M4 Missense_Mutation p.E41D 0.13 deleterious(0) benign(0.084) TCGA-CD-8525-01 1 27223851 27223851 A G GPATCH3 Missense_Mutation p.C273R 0.12 tolerated(0.56) benign(0) TCGA-CD-8525-01 1 84991560 84991560 A G SPATA1 RNA 0.12 TCGA-CD-8525-01 21 28209827 28209827 C G ADAMTS1 3'UTR 0.30 TCGA-CD-8525-01 22 21984216 21984216 G C YDJC Missense_Mutation p.L30V 0.25 tolerated(0.39) benign(0.275) TCGA-CD-8525-01 22 40859227 40859227 G C MKL1 Missense_Mutation p.P2R 0.07 deleterious(0) benign(0.083) TCGA-CD-8525-01 2 160303427 160303427 C G BAZ2B Missense_Mutation p.V188L 0.09 benign(0.097) TCGA-CD-8525-01 2 1677555 1677555 C T PXDN Missense_Mutation p.R293H 0.22 deleterious(0) probably_damaging(0.982) TCGA-CD-8525-01 2 168105100 168105100 G C XIRP2 Missense_Mutation p.E2400Q 0.12 benign(0.109) TCGA-CD-8525-01 2 179407078 179407078 C T TTN Missense_Mutation p.E32469K 0.11 TCGA-CD-8525-01 2 20113327 20113327 C T WDR35 Missense_Mutation p.V1180M 0.13 deleterious(0) possibly_damaging(0.527) TCGA-CD-8525-01 2 234356752 234356752 A G DGKD Missense_Mutation p.Y480C 0.27 deleterious(0) probably_damaging(0.99) TCGA-CD-8525-01 3 100275725 100275725 G C TMEM45A Silent p.L104L 0.13 TCGA-CD-8525-01 3 125648331 125648331 C T ALG1L Missense_Mutation p.R143Q 0.38 deleterious(0.02) possibly_damaging(0.483) TCGA-CD-8525-01 3 138426123 138426123 C T PIK3CB Missense_Mutation p.E470K 0.24 tolerated(0.47) benign(0.041) TCGA-CD-8525-01 3 180320995 180320995 G - TTC14 Frame_Shift_Del p.E124Sfs*5 0.10 TCGA-CD-8525-01 3 49200783 49200783 G A CCDC71 Nonsense_Mutation p.R287* 0.13 TCGA-CD-8525-01 4 20714515 20714515 T A PACRGL Silent p.P157P 0.25 TCGA-CD-8525-01 4 47907326 47907327 AT - NFXL1 Frame_Shift_Del p.Y148Cfs*3 0.09 TCGA-CD-8525-01 5 137488173 137488173 C T BRD8 Missense_Mutation p.E952K 0.11 deleterious_low_confidence(0.03) probably_damaging(0.978) TCGA-CD-8525-01 5 140308819 140308819 G A PCDHAC1 Missense_Mutation p.R781Q 0.32 deleterious(0.04) benign(0.018) TCGA-CD-8525-01 5 140580416 140580416 C A PCDHB11 Missense_Mutation p.P357T 0.07 deleterious_low_confidence(0) possibly_damaging(0.833) TCGA-CD-8525-01 5 140803086 140803086 G A PCDHGA11 Silent p.S764S 0.28 TCGA-CD-8525-01 5 156514152 156514152 T C HAVCR2 Silent p.Q289Q 0.28 TCGA-CD-8525-01 5 36249774 36249777 CTGT - RANBP3L Frame_Shift_Del p.R484Sfs*12 0.29 TCGA-CD-8525-01 5 41000403 41000403 C G MROH2B Missense_Mutation p.E1467D 0.19 tolerated(0.18) benign(0.012) TCGA-CD-8525-01 5 43653152 43653152 C T NNT Silent p.V632V 0.06 TCGA-CD-8525-01 5 45303801 45303801 T C HCN1 Silent p.G506G 0.09 TCGA-CD-8525-01 6 116442804 116442804 C T COL10A1 Missense_Mutation p.G159R 0.21 deleterious(0) unknown(0) TCGA-CD-8525-01 6 127608243 127608243 G A RNF146 Missense_Mutation p.R162H 0.11 deleterious(0) probably_damaging(0.997) TCGA-CD-8525-01 6 128388735 128388735 A C PTPRK Missense_Mutation p.F696V 0.13 deleterious(0) benign(0.098) TCGA-CD-8525-01 6 149721793 149721793 A C SUMO4 Missense_Mutation p.Q89P 0.09 deleterious(0) possibly_damaging(0.888) TCGA-CD-8525-01 6 168349018 168349018 C T MLLT4 Nonsense_Mutation p.Q1224* 0.06 TCGA-CD-8525-01 6 168352735 168352735 C T MLLT4 Silent p.L1560L 0.06 TCGA-CD-8525-01 6 26452383 26452383 G T BTN3A3 Missense_Mutation p.R500I 0.24 tolerated(0.07) probably_damaging(0.997) TCGA-CD-8525-01 6 73900379 73900379 C G KCNQ5 Missense_Mutation p.S573C 0.27 deleterious(0) probably_damaging(0.999) TCGA-CD-8525-01 7 123143002 123143002 G A IQUB Missense_Mutation p.T288M 0.24 deleterious(0) probably_damaging(0.996) TCGA-CD-8525-01 7 124404795 124404795 G A GPR37 Missense_Mutation p.A79V 0.30 tolerated_low_confidence(0.05) benign(0.003) TCGA-CD-8525-01 7 126882910 126882910 G C GRM8 Missense_Mutation p.L117V 0.12 tolerated(0.08) possibly_damaging(0.801) TCGA-CD-8525-01 8 22085733 22085733 A C PHYHIP Missense_Mutation p.N46K 0.26 tolerated(0.12) possibly_damaging(0.837) TCGA-CD-8525-01 8 41548080 41548080 C T ANK1 Missense_Mutation p.G1340E 0.09 deleterious(0) probably_damaging(1) TCGA-CD-8525-01 8 55533671 55533671 G A RP1 Missense_Mutation p.G49S 0.31 tolerated(0.34) benign(0.029) TCGA-CD-8525-01 8 91643833 91643833 C A TMEM64 Nonsense_Mutation p.E300* 0.15 TCGA-CD-8525-01 9 104170424 104170424 A G ZNF189 Missense_Mutation p.Q125R 0.13 tolerated(0.52) benign(0.007) TCGA-CD-8525-01 9 72785529 72785529 G C MAMDC2 Missense_Mutation p.D545H 0.26 deleterious(0) probably_damaging(0.982) TCGA-CD-8525-01 X 100490873 100490873 G T DRP2 Missense_Mutation p.A48S 0.10 tolerated_low_confidence(0.21) benign(0.039) TCGA-CD-8525-01 X 115574828 115574828 A G SLC6A14 Missense_Mutation p.S176G 0.22 tolerated(0.14) benign(0.012) TCGA-CD-8525-01 X 123554435 123554435 C T TENM1 Missense_Mutation p.D1570N 0.11 deleterious(0.01) benign(0.183) TCGA-CD-8525-01 X 12885640 12885640 C G TLR7 5'UTR 0.23 TCGA-CD-8525-01 X 134715497 134715497 A - DDX26B Frame_Shift_Del p.I843* 0.18 TCGA-CD-8525-01 X 138845548 138845548 G T ATP11C Silent p.G810G 0.16 TCGA-CD-8525-01 X 150349598 150349598 C A GPR50 Missense_Mutation p.P515T 0.15 tolerated_low_confidence(0.47) benign(0.005) TCGA-CD-8525-01 X 23752471 23752471 T G ACOT9 Silent p.I44I 0.26 TCGA-CD-8525-01 X 69454559 69454559 A G AWAT1 Missense_Mutation p.K5R 0.11 tolerated(0.06) benign(0.09) TCGA-CD-8525-01 X 89177654 89177654 G AA TGIF2LX Frame_Shift_Ins p.V193Gfs*48 0.14 TCGA-CD-8525-01 X 99662948 99662948 C T PCDH19 Silent p.P216P 0.09 TCGA-CD-8526-01 10 105108736 105108736 C G PCGF6 Missense_Mutation p.E127D 0.13 tolerated(0.37) possibly_damaging(0.636) TCGA-CD-8526-01 10 132944832 132944832 G A TCERG1L Missense_Mutation p.R376C 0.33 deleterious(0) probably_damaging(0.998) TCGA-CD-8526-01 11 18231624 18231624 G A RP11-113D6.10 Missense_Mutation p.G137E 0.34 deleterious(0) probably_damaging(0.991) TCGA-CD-8526-01 11 3114849 3114849 C T OSBPL5 Silent p.A618A 0.06 TCGA-CD-8526-01 11 404544 404544 G A PKP3 Missense_Mutation p.R790Q 0.33 tolerated(0.2) probably_damaging(0.997) TCGA-CD-8526-01 11 55036792 55036792 G C TRIM48 Missense_Mutation p.R218T 0.08 tolerated(0.36) benign(0.002) TCGA-CD-8526-01 11 59481026 59481026 C A OR10V1 Missense_Mutation p.C98F 0.12 deleterious(0) probably_damaging(0.932) TCGA-CD-8526-01 11 64822123 64822123 C T NAALADL1 Missense_Mutation p.E231K 0.25 deleterious(0.01) benign(0.045) TCGA-CD-8526-01 12 120502665 120502665 C T CCDC64 Silent p.G297G 0.21 TCGA-CD-8526-01 12 123430687 123430687 C T ABCB9 Missense_Mutation p.R379Q 0.26 deleterious(0) probably_damaging(0.998) TCGA-CD-8526-01 12 6646936 6646936 G T GAPDH Missense_Mutation p.A238S 0.15 tolerated_low_confidence(0.12) benign(0.018) TCGA-CD-8526-01 13 101707679 101707679 C T NALCN Missense_Mutation p.D1729N 0.11 tolerated_low_confidence(0.05) benign(0.289) TCGA-CD-8526-01 14 101435306 101435306 C T SNORD114-12 RNA 0.17 TCGA-CD-8526-01 14 76330134 76330134 G T TTLL5 Missense_Mutation p.A1151S 0.24 deleterious(0) probably_damaging(0.998) TCGA-CD-8526-01 15 42743712 42743712 C T ZNF106 Missense_Mutation p.R230H 0.39 tolerated(0.36) probably_damaging(0.998) TCGA-CD-8526-01 15 80450463 80450463 A G FAH Missense_Mutation p.H48R 0.18 tolerated(0.26) benign(0.001) TCGA-CD-8526-01 17 26726787 26726787 T C SARM1 3'UTR 0.15 TCGA-CD-8526-01 17 61988595 61988595 C T CSHL1 5'Flank 0.24 TCGA-CD-8526-01 17 7133213 7133213 G A DVL2 Silent p.A190A 0.14 TCGA-CD-8526-01 17 7577124 7577124 C T TP53 Missense_Mutation p.V272M 0.28 deleterious(0) probably_damaging(0.997) TCGA-CD-8526-01 19 11015670 11015671 AG - CARM1 Frame_Shift_Del p.E89Vfs*101 0.17 TCGA-CD-8526-01 19 35850476 35850476 G A FFAR3 Silent p.A228A 0.17 TCGA-CD-8526-01 19 41352841 41352841 C T CYP2A6 Missense_Mutation p.R257H 0.18 benign(0.007) TCGA-CD-8526-01 19 57985198 57985198 C T ZNF772 Missense_Mutation p.R305H 0.45 tolerated(0.16) probably_damaging(0.998) TCGA-CD-8526-01 19 7684501 7684501 C T XAB2 Missense_Mutation p.A847T 0.24 deleterious(0.04) benign(0.003) TCGA-CD-8526-01 1 104120126 104120126 G T AMY2B Missense_Mutation p.W372C 0.21 deleterious(0.01) probably_damaging(0.98) TCGA-CD-8526-01 1 159410369 159410369 C G OR10J1 Nonsense_Mutation p.S274* 0.06 TCGA-CD-8526-01 1 16903864 16903864 G T NBPF1 Missense_Mutation p.Q618K 0.12 tolerated(0.06) possibly_damaging(0.882) TCGA-CD-8526-01 1 248458178 248458178 C A OR2T12 Missense_Mutation p.A235S 0.14 deleterious(0.01) probably_damaging(0.938) TCGA-CD-8526-01 1 57140083 57140083 G C PRKAA2 Missense_Mutation p.V42L 0.15 deleterious(0) probably_damaging(0.997) TCGA-CD-8526-01 1 59247812 59247813 TC - JUN Frame_Shift_Del p.K311Sfs*6 0.12 TCGA-CD-8526-01 22 29747700 29747700 G A AP1B1 Silent p.I351I 0.33 TCGA-CD-8526-01 22 41997112 41997112 C T DESI1 Missense_Mutation p.G166S 0.27 tolerated_low_confidence(0.07) benign(0.296) TCGA-CD-8526-01 22 46644115 46644115 G A CDPF1 Missense_Mutation p.P23S 0.21 tolerated(0.09) possibly_damaging(0.822) TCGA-CD-8526-01 2 136566777 136566778 TC - LCT Frame_Shift_Del p.D1047Lfs*8 0.16 TCGA-CD-8526-01 2 179641252 179641252 G A TTN Missense_Mutation p.T1780I 0.13 TCGA-CD-8526-01 2 97474375 97474375 G A CNNM4 Missense_Mutation p.A676T 0.26 tolerated(0.37) benign(0) TCGA-CD-8526-01 3 150916325 150916325 G C GPR171 Missense_Mutation p.I283M 0.19 deleterious(0) possibly_damaging(0.583) TCGA-CD-8526-01 3 151129252 151129252 C A MED12L Missense_Mutation p.Q1998K 0.10 deleterious_low_confidence(0.01) probably_damaging(0.963) TCGA-CD-8526-01 3 48896998 48896998 C A SLC25A20 Nonsense_Mutation p.E200* 0.11 TCGA-CD-8526-01 3 49867138 49867138 C T TRAIP Missense_Mutation p.G383D 0.18 tolerated(0.3) benign(0.003) TCGA-CD-8526-01 4 84383771 84383771 G A FAM175A Missense_Mutation p.R361W 0.29 deleterious(0) probably_damaging(0.999) TCGA-CD-8526-01 5 137781275 137781275 G A REEP2 Silent p.A226A 0.33 TCGA-CD-8526-01 5 140559227 140559227 G A PCDHB8 Missense_Mutation p.G538S 0.21 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-CD-8526-01 5 150029689 150029689 C T SYNPO Missense_Mutation p.R862C 0.28 tolerated(0.07) probably_damaging(0.999) TCGA-CD-8526-01 5 22078599 22078600 - A CDH12 Frame_Shift_Ins p.V63Cfs*43 0.09 TCGA-CD-8526-01 5 33938220 33938220 C A RXFP3 Missense_Mutation p.R459S 0.25 tolerated_low_confidence(0.07) possibly_damaging(0.66) TCGA-CD-8526-01 6 133047896 133047896 G A VNN3 Intron 0.09 TCGA-CD-8526-01 6 144858781 144858781 G C UTRN Missense_Mutation p.W2099C 0.19 deleterious(0) probably_damaging(0.968) TCGA-CD-8526-01 6 33244009 33244009 G A RPS18 Silent p.K116K 0.11 TCGA-CD-8526-01 6 79655835 79655835 G C PHIP Missense_Mutation p.R1505G 0.28 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-CD-8526-01 7 111368447 111368447 C T DOCK4 Silent p.P1928P 0.08 TCGA-CD-8526-01 7 150706297 150706297 C T NOS3 Missense_Mutation p.R756W 0.16 deleterious(0) probably_damaging(0.995) TCGA-CD-8526-01 7 44924114 44924114 C G PURB Missense_Mutation p.E278D 0.10 tolerated(0.05) benign(0.101) TCGA-CD-8526-01 8 139263141 139263141 G T FAM135B Missense_Mutation p.S162Y 0.21 deleterious(0) probably_damaging(0.999) TCGA-CD-8526-01 8 73934526 73934526 A G TERF1 Missense_Mutation p.N205D 0.54 tolerated(0.37) benign(0.003) TCGA-CD-8526-01 9 19120904 19120904 T C PLIN2 Missense_Mutation p.Y190C 0.15 deleterious(0) probably_damaging(0.994) TCGA-CD-8526-01 9 39103860 39103860 A T CNTNAP3 Missense_Mutation p.F806Y 0.29 deleterious(0) probably_damaging(0.984) TCGA-CD-8526-01 9 8486014 8486014 C T PTPRD Missense_Mutation p.V935I 0.20 tolerated(0.42) benign(0.265) TCGA-CD-8526-01 X 129761999 129761999 A C ENOX2 Missense_Mutation p.L545R 0.04 deleterious(0) possibly_damaging(0.777) TCGA-CD-8526-01 X 5811225 5811225 G A NLGN4X Missense_Mutation p.A695V 0.16 tolerated(0.22) probably_damaging(0.972) TCGA-CD-8527-01 10 102709894 102709894 T C FAM178A Missense_Mutation p.V1061A 0.35 tolerated(0.74) benign(0.221) TCGA-CD-8527-01 10 103563707 103563707 G C MGEA5 Missense_Mutation p.A274G 0.18 tolerated(0.4) possibly_damaging(0.515) TCGA-CD-8527-01 10 104173948 104173948 C A PSD Silent p.G377G 0.21 TCGA-CD-8527-01 10 118427830 118427830 G A C10orf82 5'UTR 0.27 TCGA-CD-8527-01 10 133754196 133754196 C T PPP2R2D Missense_Mutation p.R128W 0.11 deleterious(0) possibly_damaging(0.85) TCGA-CD-8527-01 10 135126151 135126151 C T ZNF511 Intron 0.20 TCGA-CD-8527-01 10 24832909 24832910 - A KIAA1217 Frame_Shift_Ins p.F1573Vfs*2 0.22 TCGA-CD-8527-01 10 26500926 26500926 C T MYO3A 3'UTR 0.71 TCGA-CD-8527-01 10 30318557 30318557 G A KIAA1462 Nonsense_Mutation p.R174* 0.08 TCGA-CD-8527-01 10 51769587 51769587 C T AGAP6 Missense_Mutation p.R568C 0.24 deleterious(0.02) benign(0.077) TCGA-CD-8527-01 10 60546751 60546751 C T BICC1 Silent p.G152G 0.26 TCGA-CD-8527-01 10 72179853 72179853 T C EIF4EBP2 Missense_Mutation p.V110A 0.23 tolerated(0.77) benign(0.002) TCGA-CD-8527-01 10 72360440 72360440 G T PRF1 Nonsense_Mutation p.C73* 0.55 TCGA-CD-8527-01 10 79552106 79552106 C T DLG5 3'UTR 0.20 TCGA-CD-8527-01 10 81146114 81146114 C T ZCCHC24 Missense_Mutation p.R238H 0.24 deleterious(0) probably_damaging(0.991) TCGA-CD-8527-01 10 99511150 99511150 C T ZFYVE27 Silent p.D274D 0.16 TCGA-CD-8527-01 11 20177850 20177850 C T DBX1 Silent p.A353A 0.40 TCGA-CD-8527-01 11 22380965 22380965 C T SLC17A6 Silent p.F155F 0.23 TCGA-CD-8527-01 11 3380347 3380347 C G ZNF195 3'UTR 0.32 TCGA-CD-8527-01 11 44286723 44286723 G A ALX4 Missense_Mutation p.P306L 0.24 deleterious(0) possibly_damaging(0.884) TCGA-CD-8527-01 11 46701257 46701257 C T ARHGAP1 Missense_Mutation p.R323Q 0.32 deleterious(0) probably_damaging(0.97) TCGA-CD-8527-01 11 56113601 56113601 G A OR8K1 Silent p.L29L 0.41 TCGA-CD-8527-01 11 56344314 56344314 C G OR5M10 Missense_Mutation p.R295T 0.33 tolerated(0.05) benign(0.018) TCGA-CD-8527-01 11 6432422 6432422 G A APBB1 Silent p.S52S 0.46 TCGA-CD-8527-01 11 65810589 65810589 G A GAL3ST3 Missense_Mutation p.R229C 0.26 deleterious(0.04) probably_damaging(0.959) TCGA-CD-8527-01 11 73679403 73679403 T C DNAJB13 Missense_Mutation p.I207T 0.43 deleterious(0.04) benign(0.031) TCGA-CD-8527-01 11 8009011 8009011 G C EIF3F Missense_Mutation p.V38L 0.32 deleterious_low_confidence(0) unknown(0) TCGA-CD-8527-01 11 88258490 88258490 C G GRM5 Missense_Mutation p.A905P 0.26 tolerated_low_confidence(0.2) benign(0.135) TCGA-CD-8527-01 12 109182208 109182208 G T SSH1 Missense_Mutation p.F902L 0.21 tolerated_low_confidence(1) benign(0) TCGA-CD-8527-01 12 112374526 112374526 G T TMEM116 Silent p.G186G 0.27 TCGA-CD-8527-01 12 112587666 112587666 A T TRAFD1 Nonsense_Mutation p.R424* 0.30 TCGA-CD-8527-01 12 117710313 117710313 C T NOS1 Silent p.V572V 0.52 TCGA-CD-8527-01 12 117715775 117715775 G T NOS1 Silent p.I551I 0.20 TCGA-CD-8527-01 12 120599753 120599753 A G GCN1L1 Missense_Mutation p.V758A 0.17 possibly_damaging(0.837) TCGA-CD-8527-01 12 132611322 132611322 G A RP13-977J11.5 5'Flank 0.23 TCGA-CD-8527-01 12 2994694 2994694 T G RHNO1 Silent p.T54T 0.38 TCGA-CD-8527-01 12 33592470 33592470 C - SYT10 5'UTR 0.19 TCGA-CD-8527-01 12 40629471 40629471 T C LRRK2 Silent p.L131L 0.22 TCGA-CD-8527-01 12 40761458 40761458 G T LRRK2 Missense_Mutation p.C2492F 0.34 tolerated(0.2) benign(0.025) TCGA-CD-8527-01 12 4737889 4737889 C T AKAP3 Missense_Mutation p.R60Q 0.27 tolerated(0.22) benign(0.007) TCGA-CD-8527-01 12 49948186 49948186 T C KCNH3 Missense_Mutation p.V662A 0.08 deleterious(0) probably_damaging(0.999) TCGA-CD-8527-01 12 52695751 52695751 C A KRT86 Silent p.A17A 0.06 TCGA-CD-8527-01 12 52844237 52844237 G A KRT6B Silent p.D236D 0.26 TCGA-CD-8527-01 12 53647497 53647497 T C MFSD5 Missense_Mutation p.L400P 0.09 deleterious(0) probably_damaging(0.939) TCGA-CD-8527-01 12 56481648 56481648 A G ERBB3 Missense_Mutation p.H228R 0.28 deleterious(0) probably_damaging(1) TCGA-CD-8527-01 12 64202655 64202655 C A TMEM5 Missense_Mutation p.P372H 0.23 deleterious(0) probably_damaging(1) TCGA-CD-8527-01 12 8328533 8328533 A G ZNF705A Missense_Mutation p.T105A 0.37 tolerated(0.73) benign(0.022) TCGA-CD-8527-01 12 83358805 83358805 G C TMTC2 Missense_Mutation p.G534A 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-CD-8527-01 13 101910814 101910814 C T NALCN Missense_Mutation p.D416N 0.23 tolerated(0.31) benign(0.087) TCGA-CD-8527-01 13 37583695 37583695 T C SUPT20H 3'UTR 0.33 TCGA-CD-8527-01 13 53262031 53262031 A G SUGT1 3'Flank 0.30 TCGA-CD-8527-01 13 58209157 58209157 C A PCDH17 Missense_Mutation p.P826H 0.30 deleterious(0.01) possibly_damaging(0.827) TCGA-CD-8527-01 13 61988055 61988055 G A PCDH20 Silent p.L59L 0.42 TCGA-CD-8527-01 13 66878699 66878699 T A PCDH9 3'UTR 0.27 TCGA-CD-8527-01 14 100363543 100363543 G A EML1 Missense_Mutation p.V266I 0.83 deleterious(0.04) possibly_damaging(0.53) TCGA-CD-8527-01 14 105406981 105406981 G A AHNAK2 Missense_Mutation p.P4936L 0.12 benign(0.041) TCGA-CD-8527-01 14 20923813 20923813 G A APEX1 Silent p.K3K 0.25 TCGA-CD-8527-01 14 24884516 24884516 C A NYNRIN Silent p.A1187A 0.22 TCGA-CD-8527-01 14 29237317 29237317 A G FOXG1 Missense_Mutation p.T278A 0.77 tolerated(0.28) benign(0.235) TCGA-CD-8527-01 14 39818141 39818141 A G CTAGE5 Silent p.P741P 0.08 TCGA-CD-8527-01 14 79270092 79270092 C T NRXN3 Missense_Mutation p.T352M 0.23 deleterious(0) probably_damaging(0.998) TCGA-CD-8527-01 14 79432746 79432747 - G NRXN3 Frame_Shift_Ins 0.24 TCGA-CD-8527-01 14 94152946 94152946 G T UNC79 Missense_Mutation p.R2145M 0.34 deleterious(0) possibly_damaging(0.812) TCGA-CD-8527-01 15 101569258 101569258 C T LRRK1 Silent p.S928S 0.73 TCGA-CD-8527-01 15 40398015 40398015 T A BMF Missense_Mutation p.E91D 0.78 deleterious(0.02) possibly_damaging(0.529) TCGA-CD-8527-01 15 63880451 63880451 T C USP3 Intron 0.40 TCGA-CD-8527-01 15 65489691 65489691 C T CILP Missense_Mutation p.R978Q 0.29 deleterious(0.03) possibly_damaging(0.709) TCGA-CD-8527-01 15 66190400 66190400 C T MEGF11 Missense_Mutation p.G1003S 0.29 tolerated(0.12) benign(0.001) TCGA-CD-8527-01 15 72543197 72543197 G T PARP6 Silent p.T469T 0.56 TCGA-CD-8527-01 15 86225395 86225395 G A AKAP13 Missense_Mutation p.R1707Q 0.47 deleterious(0.04) possibly_damaging(0.49) TCGA-CD-8527-01 15 91543197 91543197 C A VPS33B Missense_Mutation p.E530D 0.25 tolerated(0.14) benign(0.015) TCGA-CD-8527-01 16 19548520 19548520 G A CCP110 Missense_Mutation p.S510N 0.25 tolerated(0.41) benign(0.038) TCGA-CD-8527-01 16 1961699 1961699 C T HS3ST6 Silent p.R276R 0.23 TCGA-CD-8527-01 16 2052336 2052336 A C ZNF598 Missense_Mutation p.F256V 0.23 probably_damaging(0.999) TCGA-CD-8527-01 16 23200994 23200994 T A SCNN1G Splice_Site p.X206_splice 0.06 TCGA-CD-8527-01 16 23205501 23205501 G A SCNN1G Silent p.T273T 0.22 TCGA-CD-8527-01 16 2495531 2495531 C T CCNF Silent p.T334T 0.26 TCGA-CD-8527-01 16 29824366 29824366 C T PRRT2 5'UTR 0.28 TCGA-CD-8527-01 16 3598734 3598736 GGA - NLRC3 In_Frame_Del p.L920del 0.30 TCGA-CD-8527-01 16 4457673 4457673 G A CORO7 Nonsense_Mutation p.R106* 0.30 TCGA-CD-8527-01 16 539001 539001 G T RAB11FIP3 Splice_Site p.X422_splice 0.31 TCGA-CD-8527-01 16 55360314 55360314 G A IRX6 Missense_Mutation p.A38T 0.27 tolerated(0.24) benign(0.064) TCGA-CD-8527-01 16 55725948 55725948 G A SLC6A2 Missense_Mutation p.R301H 0.53 tolerated(0.07) benign(0.327) TCGA-CD-8527-01 16 65032498 65032498 A T CDH11 Missense_Mutation p.Y164N 0.06 deleterious(0) probably_damaging(0.939) TCGA-CD-8527-01 16 72120412 72120412 G A TXNL4B 3'UTR 0.75 TCGA-CD-8527-01 16 824912 824912 G A MSLNL Missense_Mutation p.R554W 0.16 benign(0.005) TCGA-CD-8527-01 16 85691162 85691162 G A GSE1 Missense_Mutation p.R531Q 0.33 deleterious(0) probably_damaging(0.998) TCGA-CD-8527-01 16 89350272 89350272 C T ANKRD11 Missense_Mutation p.R893Q 0.25 benign(0.124) TCGA-CD-8527-01 16 90094048 90094048 C T GAS8 Missense_Mutation p.P3L 0.18 deleterious(0) probably_damaging(0.995) TCGA-CD-8527-01 16 90106768 90106768 C T GAS8 Nonsense_Mutation p.Q358* 0.19 TCGA-CD-8527-01 16 90160865 90160865 C T TUBB8P7 RNA 0.35 TCGA-CD-8527-01 17 37186428 37186428 C A CTD-2206N4.2 5'Flank 0.33 TCGA-CD-8527-01 17 38252140 38252140 A C NR1D1 Missense_Mutation p.F269V 0.25 tolerated(0.5) benign(0.109) TCGA-CD-8527-01 17 39633826 39633826 G C KRT35 Silent p.A388A 0.27 TCGA-CD-8527-01 17 39643639 39643639 G A KRT36 Silent p.N317N 0.66 TCGA-CD-8527-01 17 39776787 39776787 C T KRT17 Splice_Site p.X402_splice 0.24 TCGA-CD-8527-01 17 40180200 40180200 C T ZNF385C Silent p.P345P 0.55 TCGA-CD-8527-01 17 40714969 40714969 C T COASY Missense_Mutation p.P139L 0.21 deleterious(0) probably_damaging(0.999) TCGA-CD-8527-01 17 40714970 40714970 G T COASY Silent p.P139P 0.21 TCGA-CD-8527-01 17 40939912 40939912 C A WNK4 Missense_Mutation p.P620T 0.15 deleterious(0.01) unknown(0) TCGA-CD-8527-01 17 40946850 40946850 C T WNK4 Missense_Mutation p.S804L 0.23 tolerated(0.17) unknown(0) TCGA-CD-8527-01 17 41116247 41116247 G C PTGES3L-AARSD1 Missense_Mutation p.T190S 0.20 tolerated(0.25) benign(0.07) TCGA-CD-8527-01 17 43922821 43922821 C T SPPL2C Silent p.I183I 0.24 TCGA-CD-8527-01 17 44101420 44101420 G A MAPT Silent p.T738T 0.20 TCGA-CD-8527-01 17 67519770 67519770 A G MAP2K6 Silent p.K217K 0.23 TCGA-CD-8527-01 17 6905132 6905133 - A ALOX12 Intron 0.24 TCGA-CD-8527-01 17 74464954 74464954 G T AANAT Silent p.P87P 0.11 TCGA-CD-8527-01 17 7462233 7462233 T G TNFSF13 5'UTR 0.34 TCGA-CD-8527-01 17 77926603 77926603 G A TBC1D16 Missense_Mutation p.S265F 0.26 tolerated(0.71) benign(0.042) TCGA-CD-8527-01 17 9674955 9674955 C T DHRS7C Missense_Mutation p.M263I 0.88 tolerated(0.06) benign(0.016) TCGA-CD-8527-01 18 50994306 50994306 A G DCC Missense_Mutation p.E1221G 0.46 deleterious(0) possibly_damaging(0.699) TCGA-CD-8527-01 19 12542781 12542781 C T ZNF443 Missense_Mutation p.E69K 0.28 tolerated(0.15) possibly_damaging(0.857) TCGA-CD-8527-01 19 2046617 2046617 C T MKNK2 Missense_Mutation p.C42Y 0.29 deleterious_low_confidence(0.04) benign(0.116) TCGA-CD-8527-01 19 2807486 2807486 G A THOP1 Silent p.A311A 0.40 TCGA-CD-8527-01 19 39008073 39008073 G A RYR1 Missense_Mutation p.G3254R 0.73 benign(0.193) TCGA-CD-8527-01 19 39998199 39998199 C T DLL3 Silent p.H538H 0.50 TCGA-CD-8527-01 19 46915929 46915929 C T CCDC8 Missense_Mutation p.E47K 0.47 probably_damaging(0.936) TCGA-CD-8527-01 19 51631230 51631230 A G SIGLEC9 Missense_Mutation p.Q347R 0.07 tolerated(0.56) benign(0.245) TCGA-CD-8527-01 19 52496650 52496650 C T ZNF615 Missense_Mutation p.R571H 0.25 deleterious(0) probably_damaging(0.999) TCGA-CD-8527-01 19 57132800 57132800 C T ZNF71 Missense_Mutation p.R49W 0.08 tolerated(0.16) benign(0.116) TCGA-CD-8527-01 19 57743527 57743527 G A AURKC Silent p.S77S 0.31 TCGA-CD-8527-01 19 58571478 58571478 G A ZNF135 Intron 0.48 TCGA-CD-8527-01 19 9578389 9578389 C G ZNF560 Missense_Mutation p.A412P 0.29 deleterious(0.01) probably_damaging(0.975) TCGA-CD-8527-01 1 109271412 109271412 C T FNDC7 Missense_Mutation p.R510W 0.23 deleterious(0.05) benign(0.001) TCGA-CD-8527-01 1 109794328 109794328 C T CELSR2 Missense_Mutation p.R543C 0.32 deleterious(0.03) benign(0.081) TCGA-CD-8527-01 1 114309057 114309057 C T RSBN1 Missense_Mutation p.E652K 0.30 deleterious(0) possibly_damaging(0.879) TCGA-CD-8527-01 1 144906453 144906453 T G PDE4DIP Silent p.R802R 0.22 TCGA-CD-8527-01 1 150443610 150443610 G A RPRD2 Missense_Mutation p.R729Q 0.19 deleterious_low_confidence(0) possibly_damaging(0.808) TCGA-CD-8527-01 1 151262876 151262876 C T ZNF687 Intron 0.20 TCGA-CD-8527-01 1 153965404 153965404 A - NUP210L Frame_Shift_Del p.F1858Lfs*11 0.09 TCGA-CD-8527-01 1 155234561 155234561 C A CLK2 Missense_Mutation p.R312L 0.34 tolerated(0.06) probably_damaging(0.998) TCGA-CD-8527-01 1 1564542 1564542 G A MIB2 Silent p.A859A 0.56 TCGA-CD-8527-01 1 158390237 158390237 C A OR10K2 Silent p.V140V 0.22 TCGA-CD-8527-01 1 158549497 158549497 T G OR10X1 Missense_Mutation p.T65P 0.28 deleterious(0.01) benign(0.085) TCGA-CD-8527-01 1 158637761 158637761 T G SPTA1 Missense_Mutation p.K642T 0.29 tolerated(0.1) possibly_damaging(0.9) TCGA-CD-8527-01 1 162741839 162741839 C T DDR2 Silent p.V510V 0.23 TCGA-CD-8527-01 1 180163458 180163458 G T QSOX1 Missense_Mutation p.V467L 0.52 deleterious(0) possibly_damaging(0.628) TCGA-CD-8527-01 1 183190066 183190066 G T LAMC2 Missense_Mutation p.V204F 0.24 deleterious(0) possibly_damaging(0.594) TCGA-CD-8527-01 1 193111146 193111147 AG - CDC73 Frame_Shift_Del p.R229Sfs*37 0.17 TCGA-CD-8527-01 1 203680140 203680140 C T ATP2B4 Silent p.F645F 0.24 TCGA-CD-8527-01 1 214820722 214820722 C A CENPF Missense_Mutation p.D2603E 0.62 benign(0) TCGA-CD-8527-01 1 21806543 21806543 G C NBPF3 Splice_Site p.X403_splice 0.38 TCGA-CD-8527-01 1 228345589 228345589 G A GJC2 Missense_Mutation p.E44K 0.50 deleterious(0) probably_damaging(0.995) TCGA-CD-8527-01 1 231047280 231047280 A T TTC13 Missense_Mutation p.C749S 0.43 deleterious(0.04) benign(0.005) TCGA-CD-8527-01 1 236157005 236157005 C T NID1 Missense_Mutation p.V899M 0.33 deleterious(0.03) probably_damaging(0.992) TCGA-CD-8527-01 1 240072345 240072345 C A CHRM3 Missense_Mutation p.L532M 0.13 deleterious(0) probably_damaging(0.999) TCGA-CD-8527-01 1 248637589 248637589 G C OR2T3 Missense_Mutation p.R313T 0.18 tolerated(0.41) benign(0.075) TCGA-CD-8527-01 1 3328498 3328498 C G PRDM16 Missense_Mutation p.F579L 0.29 tolerated(0.69) benign(0.001) TCGA-CD-8527-01 1 35260778 35260778 C T GJA4 Missense_Mutation p.R322C 0.37 deleterious(0) probably_damaging(0.985) TCGA-CD-8527-01 1 41092239 41092239 G A RIMS3 Missense_Mutation p.R293C 0.74 deleterious_low_confidence(0) probably_damaging(0.964) TCGA-CD-8527-01 1 52825375 52825375 A G CC2D1B Splice_Site p.X314_splice 0.27 TCGA-CD-8527-01 1 54298164 54298164 T C NDC1 Silent p.A93A 0.21 TCGA-CD-8527-01 1 62672631 62672632 - A L1TD1 Frame_Shift_Ins p.T113Nfs*13 0.10 TCGA-CD-8527-01 1 6706039 6706039 C T DNAJC11 Splice_Site p.X235_splice 0.46 TCGA-CD-8527-01 1 7724156 7724156 C T CAMTA1 Missense_Mutation p.P517S 0.33 tolerated_low_confidence(0.74) benign(0.007) TCGA-CD-8527-01 1 92946613 92946613 C T GFI1 Missense_Mutation p.E111K 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.651) TCGA-CD-8527-01 20 13279607 13279607 G A ISM1 Missense_Mutation p.R299H 0.23 deleterious(0) probably_damaging(0.983) TCGA-CD-8527-01 20 30919058 30919058 C T KIF3B Missense_Mutation p.S727F 0.16 deleterious(0.04) possibly_damaging(0.485) TCGA-CD-8527-01 20 35467810 35467810 T C SOGA1 Missense_Mutation p.E241G 0.21 deleterious(0) probably_damaging(0.999) TCGA-CD-8527-01 20 3670819 3670819 C T SIGLEC1 Missense_Mutation p.A1562T 0.58 deleterious(0) probably_damaging(0.99) TCGA-CD-8527-01 20 37356767 37356767 G A SLC32A1 Missense_Mutation p.A355T 0.28 deleterious(0) possibly_damaging(0.903) TCGA-CD-8527-01 20 44640827 44640827 C A MMP9 Missense_Mutation p.P350H 0.20 deleterious(0) probably_damaging(1) TCGA-CD-8527-01 20 47866105 47866105 G A ZNFX1 Silent p.S1152S 0.13 TCGA-CD-8527-01 20 58514447 58514447 C T PPP1R3D Silent p.E180E 0.18 TCGA-CD-8527-01 20 6033406 6033406 G A LRRN4 Missense_Mutation p.R14C 0.15 tolerated(0.08) benign(0.439) TCGA-CD-8527-01 20 61341129 61341129 C T NTSR1 Silent p.S190S 0.21 TCGA-CD-8527-01 20 8665706 8665706 G A PLCB1 Silent p.S330S 0.21 TCGA-CD-8527-01 21 22782720 22782720 T A NCAM2 Nonsense_Mutation p.L441* 0.26 TCGA-CD-8527-01 22 22707475 22707475 T C IGLV5-48 Silent p.P21P 0.18 TCGA-CD-8527-01 22 30857304 30857304 G A SEC14L3 Silent p.A358A 0.33 TCGA-CD-8527-01 22 37407215 37407215 G A TST Silent p.R249R 0.31 TCGA-CD-8527-01 22 37499393 37499393 G A TMPRSS6 Missense_Mutation p.A31V 0.38 deleterious(0.03) probably_damaging(0.986) TCGA-CD-8527-01 22 37769679 37769679 C T ELFN2 Silent p.S632S 0.38 TCGA-CD-8527-01 22 38373971 38373971 G A SOX10 Silent p.T200T 0.10 TCGA-CD-8527-01 22 50280130 50280130 C T ZBED4 Silent p.F940F 0.25 TCGA-CD-8527-01 22 50506890 50506890 A T MLC1 Missense_Mutation p.M289K 0.27 deleterious_low_confidence(0) benign(0.031) TCGA-CD-8527-01 2 11770190 11770190 T C GREB1 Silent p.P1522P 0.08 TCGA-CD-8527-01 2 11802131 11802131 C T NTSR2 Missense_Mutation p.R287H 0.53 tolerated(0.34) benign(0.009) TCGA-CD-8527-01 2 12880542 12880542 C T TRIB2 Silent p.Y218Y 0.26 TCGA-CD-8527-01 2 128932357 128932357 A C UGGT1 Missense_Mutation p.Q1155P 0.22 deleterious(0) probably_damaging(0.999) TCGA-CD-8527-01 2 141027915 141027915 G T LRP1B Missense_Mutation p.N4381K 0.14 benign(0.403) TCGA-CD-8527-01 2 141356374 141356374 T G LRP1B Missense_Mutation p.Q2340H 0.13 possibly_damaging(0.522) TCGA-CD-8527-01 2 154335111 154335111 G A RPRM 5'UTR 0.20 TCGA-CD-8527-01 2 166010963 166010963 T C SCN3A Missense_Mutation p.Q460R 0.09 tolerated(0.06) benign(0.021) TCGA-CD-8527-01 2 166848165 166848165 G A SCN1A Missense_Mutation p.R1874W 0.15 deleterious(0) probably_damaging(1) TCGA-CD-8527-01 2 167089905 167089905 C T SCN9A Missense_Mutation p.R1279Q 0.43 deleterious(0.01) probably_damaging(0.999) TCGA-CD-8527-01 2 170411638 170411638 G A FASTKD1 Missense_Mutation p.L404F 0.13 tolerated(0.17) benign(0.055) TCGA-CD-8527-01 2 172945099 172945099 G A METAP1D Missense_Mutation p.A325T 0.28 tolerated(0.09) benign(0.004) TCGA-CD-8527-01 2 178386012 178386012 C T AGPS Silent p.Y571Y 0.54 TCGA-CD-8527-01 2 179430415 179430415 T C TTN Missense_Mutation p.Y26815C 0.07 TCGA-CD-8527-01 2 180634389 180634389 G T ZNF385B Missense_Mutation p.L32I 0.22 tolerated(0.08) benign(0.444) TCGA-CD-8527-01 2 18757571 18757571 C T NT5C1B Missense_Mutation p.R463H 0.21 deleterious(0) probably_damaging(0.999) TCGA-CD-8527-01 2 21250815 21250815 G T APOB Missense_Mutation p.A651D 0.20 possibly_damaging(0.834) TCGA-CD-8527-01 2 217234856 217234856 C T MARCH4 Missense_Mutation p.R43H 0.12 tolerated_low_confidence(0.06) probably_damaging(0.964) TCGA-CD-8527-01 2 222301249 222301249 T A EPHA4 Missense_Mutation p.D739V 0.35 deleterious(0) probably_damaging(0.996) TCGA-CD-8527-01 2 228860405 228860405 C G SPHKAP Missense_Mutation p.S1485T 0.32 tolerated(0.11) benign(0.021) TCGA-CD-8527-01 2 230652221 230652221 T - TRIP12 Frame_Shift_Del p.K1590Nfs*4 0.25 TCGA-CD-8527-01 2 231077646 231077646 G A SP110 Missense_Mutation p.A138V 0.36 tolerated(0.26) possibly_damaging(0.695) TCGA-CD-8527-01 2 45171770 45171770 G A SIX3 Silent p.T290T 0.37 TCGA-CD-8527-01 2 73677634 73677634 C T ALMS1 Missense_Mutation p.P1326L 0.26 benign(0.202) TCGA-CD-8527-01 2 74452025 74452025 T - SLC4A5 Frame_Shift_Del p.K1079Rfs*29 0.20 TCGA-CD-8527-01 2 89247311 89247311 G T IGKV1-5 5'UTR 0.23 TCGA-CD-8527-01 2 96953698 96953698 G A SNRNP200 Missense_Mutation p.R1090W 0.20 deleterious(0) probably_damaging(1) TCGA-CD-8527-01 3 109046852 109046852 T G DPPA4 Missense_Mutation p.S300R 0.20 tolerated(0.13) probably_damaging(0.974) TCGA-CD-8527-01 3 111264137 111264145 TCTGCACTT - CD96 In_Frame_Del p.L103_L105del 0.21 TCGA-CD-8527-01 3 111603429 111603429 G C PHLDB2 Missense_Mutation p.G169R 0.11 deleterious(0.04) benign(0.004) TCGA-CD-8527-01 3 123375981 123375981 T G MYLK Missense_Mutation p.K1427T 0.25 deleterious(0.02) benign(0.093) TCGA-CD-8527-01 3 147127956 147127956 G A ZIC1 Silent p.A19A 0.10 TCGA-CD-8527-01 3 159995162 159995162 T C IFT80 Missense_Mutation p.I677M 0.24 tolerated(0.08) benign(0.003) TCGA-CD-8527-01 3 170150556 170150556 G A CLDN11 3'UTR 0.23 TCGA-CD-8527-01 3 179462842 179462842 G A USP13 Missense_Mutation p.A516T 0.68 tolerated(0.16) benign(0.126) TCGA-CD-8527-01 3 189584565 189584565 G A TP63 Silent p.L287L 0.32 TCGA-CD-8527-01 3 191888291 191888291 T C FGF12 Missense_Mutation p.K190R 0.19 tolerated(0.12) probably_damaging(1) TCGA-CD-8527-01 3 195047635 195047635 T - ACAP2 Frame_Shift_Del p.K241Nfs*17 0.11 TCGA-CD-8527-01 3 196242124 196242124 A T SMCO1 5'UTR 0.17 TCGA-CD-8527-01 3 48718855 48718855 C T NCKIPSD Silent p.L319L 0.67 TCGA-CD-8527-01 3 50645297 50645297 C T CISH Missense_Mutation p.S190N 0.47 tolerated(0.14) benign(0.005) TCGA-CD-8527-01 3 64139012 64139012 C T PRICKLE2 Silent p.E211E 0.33 TCGA-CD-8527-01 3 74383883 74383883 T A CNTN3 Intron 0.16 TCGA-CD-8527-01 3 77542474 77542474 A G ROBO2 Silent p.Q265Q 0.22 TCGA-CD-8527-01 3 86115964 86115964 C G CADM2 3'Flank 0.34 TCGA-CD-8527-01 3 97731269 97731269 T C GABRR3 Intron 0.20 TCGA-CD-8527-01 4 126336957 126336957 T A FAT4 Missense_Mutation p.L2280H 0.31 probably_damaging(0.997) TCGA-CD-8527-01 4 155665763 155665763 G C LRAT Missense_Mutation p.K95N 0.36 tolerated(0.18) benign(0.034) TCGA-CD-8527-01 4 166385547 166385547 C T CPE Missense_Mutation p.P105S 0.33 deleterious(0) probably_damaging(1) TCGA-CD-8527-01 4 174450016 174450016 C T HAND2 Missense_Mutation p.R142H 0.38 deleterious(0) probably_damaging(0.997) TCGA-CD-8527-01 4 1955189 1955190 - C WHSC1 Frame_Shift_Ins p.L761Pfs*21 0.10 TCGA-CD-8527-01 4 39910138 39910138 A G PDS5A Silent p.H370H 0.12 TCGA-CD-8527-01 4 73984530 73984530 T C ANKRD17 Missense_Mutation p.T1355A 0.09 benign(0.433) TCGA-CD-8527-01 4 83784523 83784523 C T SEC31A Missense_Mutation p.R486H 0.32 deleterious(0) probably_damaging(0.916) TCGA-CD-8527-01 5 111504783 111504783 G A EPB41L4A Missense_Mutation p.R587C 0.29 deleterious(0) possibly_damaging(0.847) TCGA-CD-8527-01 5 115783307 115783307 T C SEMA6A Missense_Mutation p.M699V 0.30 tolerated(0.25) probably_damaging(0.968) TCGA-CD-8527-01 5 118580164 118580164 C T DMXL1 Nonsense_Mutation p.R2918* 0.17 TCGA-CD-8527-01 5 127522312 127522312 T G SLC12A2 Missense_Mutation p.F1210V 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-CD-8527-01 5 132763301 132763301 G T FSTL4 Intron 0.35 TCGA-CD-8527-01 5 133309533 133309533 C T VDAC1 Missense_Mutation p.V237M 0.29 deleterious(0.03) probably_damaging(0.914) TCGA-CD-8527-01 5 137278591 137278591 C T FAM13B Missense_Mutation p.R832Q 0.54 tolerated(0.11) probably_damaging(0.97) TCGA-CD-8527-01 5 140183159 140183159 G A PCDHA3 Missense_Mutation p.V793I 0.55 tolerated_low_confidence(0.21) benign(0.001) TCGA-CD-8527-01 5 140256490 140256490 C T PCDHA12 Missense_Mutation p.S478L 0.48 deleterious_low_confidence(0.02) benign(0.358) TCGA-CD-8527-01 5 140581715 140581715 C T PCDHB11 Nonsense_Mutation p.R790* 0.10 TCGA-CD-8527-01 5 140802438 140802438 G A PCDHGA11 Silent p.S548S 0.24 TCGA-CD-8527-01 5 140812049 140812049 G A PCDHGA12 Missense_Mutation p.V575M 0.06 deleterious_low_confidence(0.04) benign(0.406) TCGA-CD-8527-01 5 1466949 1466949 G A LPCAT1 Silent p.L445L 0.67 TCGA-CD-8527-01 5 176827586 176827586 G A PFN3 5'UTR 0.15 TCGA-CD-8527-01 5 179297278 179297278 A T TBC1D9B Missense_Mutation p.F901Y 0.48 deleterious(0.01) benign(0.266) TCGA-CD-8527-01 5 2748955 2748955 G A IRX2 Silent p.T289T 0.76 TCGA-CD-8527-01 5 43298855 43298855 A G HMGCS1 Silent p.T71T 0.24 TCGA-CD-8527-01 5 79025857 79025857 G T CMYA5 Missense_Mutation p.K423N 0.30 possibly_damaging(0.788) TCGA-CD-8527-01 5 850567 850587 CCACGAAGACAGCCCAGGTCA - ZDHHC11 In_Frame_Del p.V44_V50del 0.35 TCGA-CD-8527-01 5 850680 850680 G - ZDHHC11 Frame_Shift_Del p.P13Qfs*19 0.29 TCGA-CD-8527-01 5 96249105 96249105 G - ERAP2 Frame_Shift_Del p.Q869Sfs*3 0.14 TCGA-CD-8527-01 6 125233331 125233331 C T RP11-510H23.1 RNA 0.33 TCGA-CD-8527-01 6 129513974 129513974 G A LAMA2 Silent p.A586A 0.37 TCGA-CD-8527-01 6 131190857 131190857 A G EPB41L2 Missense_Mutation p.V818A 0.27 tolerated(0.38) benign(0.015) TCGA-CD-8527-01 6 133846173 133846173 C T EYA4 Intron 0.21 TCGA-CD-8527-01 6 152671429 152671429 T G SYNE1 Missense_Mutation p.E3925D 0.23 benign(0.036) TCGA-CD-8527-01 6 153019200 153019200 A C MYCT1 Missense_Mutation p.S55R 0.21 tolerated(0.21) benign(0.01) TCGA-CD-8527-01 6 170597377 170597377 C T DLL1 Missense_Mutation p.R207H 0.30 tolerated(0.09) possibly_damaging(0.871) TCGA-CD-8527-01 6 26199793 26199793 G A HIST1H2BF Missense_Mutation p.E3K 0.17 deleterious_low_confidence(0.03) unknown(0) TCGA-CD-8527-01 6 26392925 26392925 G T BTN2A2 Missense_Mutation p.E434D 0.14 tolerated(0.26) benign(0.019) TCGA-CD-8527-01 6 29591187 29591187 C T GABBR1 Silent p.T286T 0.22 TCGA-CD-8527-01 6 30878477 30878477 G T GTF2H4 Missense_Mutation p.G137V 0.44 tolerated(0.19) possibly_damaging(0.703) TCGA-CD-8527-01 6 30886684 30886684 C T VARS2 Nonsense_Mutation p.R386* 0.17 TCGA-CD-8527-01 6 34101106 34101106 C T GRM4 Silent p.P56P 0.18 TCGA-CD-8527-01 6 36104269 36104269 G A MAPK13 Silent p.K152K 0.25 TCGA-CD-8527-01 6 41185583 41185583 C A TREML3P RNA 0.12 TCGA-CD-8527-01 6 43322584 43322584 G A ZNF318 Missense_Mutation p.R830C 0.23 probably_damaging(0.921) TCGA-CD-8527-01 6 76124567 76124569 TTC - FILIP1 In_Frame_Del p.K41del 0.19 TCGA-CD-8527-01 6 76527222 76527222 C T MYO6 5'UTR 0.29 TCGA-CD-8527-01 6 79711671 79711671 G A PHIP Silent p.G608G 0.29 TCGA-CD-8527-01 6 85446530 85446530 C T TBX18 Missense_Mutation p.R566Q 0.37 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-CD-8527-01 6 87725488 87725488 G A HTR1E Missense_Mutation p.V146I 0.52 deleterious(0.03) probably_damaging(0.958) TCGA-CD-8527-01 7 100086295 100086295 G C NYAP1 Missense_Mutation p.K317N 0.23 tolerated(0.06) possibly_damaging(0.899) TCGA-CD-8527-01 7 101844897 101844897 G A CUX1 Missense_Mutation p.G785S 0.24 tolerated(0.78) unknown(0) TCGA-CD-8527-01 7 107350529 107350529 G A SLC26A4 Missense_Mutation p.G707E 0.83 tolerated(1) benign(0.035) TCGA-CD-8527-01 7 138453530 138453530 G T ATP6V0A4 Missense_Mutation p.L96M 0.26 tolerated(0.19) possibly_damaging(0.612) TCGA-CD-8527-01 7 143657472 143657472 C T OR2F1 Missense_Mutation p.H137Y 0.29 deleterious(0.04) possibly_damaging(0.498) TCGA-CD-8527-01 7 148851197 148851197 G A ZNF398 Missense_Mutation p.R62Q 0.54 tolerated(0.06) possibly_damaging(0.674) TCGA-CD-8527-01 7 149486358 149486358 C T SSPO RNA 0.24 TCGA-CD-8527-01 7 150036113 150036113 G A RARRES2 Missense_Mutation p.R113W 0.29 tolerated(0.13) benign(0.142) TCGA-CD-8527-01 7 20793081 20793081 T G ABCB5 Missense_Mutation p.I1176M 0.39 deleterious(0) possibly_damaging(0.805) TCGA-CD-8527-01 7 55493072 55493072 G T LANCL2 Silent p.L378L 0.31 TCGA-CD-8527-01 7 62809630 62809630 G A AC006455.1 5'UTR 0.38 TCGA-CD-8527-01 7 63726408 63726408 G T ZNF679 Nonsense_Mutation p.E133* 0.24 TCGA-CD-8527-01 7 70231287 70231287 C A AUTS2 Silent p.P552P 0.26 TCGA-CD-8527-01 7 70254894 70254894 T C AUTS2 Missense_Mutation p.S898P 0.20 tolerated(0.36) benign(0.001) TCGA-CD-8527-01 7 87069090 87069090 C T ABCB4 Missense_Mutation p.A542T 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-CD-8527-01 7 99377613 99377613 A G CYP3A4 Splice_Site p.X55_splice 0.05 TCGA-CD-8527-01 7 99565777 99565777 C T AZGP1 Splice_Site p.X205_splice 0.44 TCGA-CD-8527-01 8 12990529 12990529 C T DLC1 Intron 0.32 TCGA-CD-8527-01 8 134232990 134232990 C T WISP1 Silent p.R172R 0.11 TCGA-CD-8527-01 8 143694717 143694717 G A ARC Missense_Mutation p.R306W 0.69 tolerated(0.09) probably_damaging(0.997) TCGA-CD-8527-01 8 143958607 143958607 G A CYP11B1 Missense_Mutation p.R143W 0.47 tolerated(0.12) benign(0.075) TCGA-CD-8527-01 8 143999227 143999227 G A CYP11B2 Silent p.C10C 0.33 TCGA-CD-8527-01 8 144659548 144659548 C T NAPRT1 Silent p.A153A 0.22 TCGA-CD-8527-01 8 144809784 144809784 G A FAM83H Missense_Mutation p.P616L 0.10 deleterious(0.01) benign(0.008) TCGA-CD-8527-01 8 28608390 28608390 C T EXTL3 3'UTR 0.08 TCGA-CD-8527-01 8 2964055 2964055 C T CSMD1 Missense_Mutation p.C2315Y 0.25 probably_damaging(0.999) TCGA-CD-8527-01 8 2976048 2976048 C T CSMD1 Silent p.S2101S 0.39 TCGA-CD-8527-01 8 30038094 30038094 C T DCTN6 Missense_Mutation p.T141M 0.09 deleterious(0.02) possibly_damaging(0.777) TCGA-CD-8527-01 8 3087592 3087592 A C CSMD1 Missense_Mutation p.F1439V 0.59 possibly_damaging(0.562) TCGA-CD-8527-01 8 33369638 33369638 G T TTI2 Missense_Mutation p.T165N 0.09 tolerated(0.35) benign(0.018) TCGA-CD-8527-01 8 57358261 57358261 C G PENK Intron 0.25 TCGA-CD-8527-01 8 59410926 59410926 C A CYP7A1 Missense_Mutation p.R61S 0.09 deleterious(0.01) benign(0.349) TCGA-CD-8527-01 8 67988734 67988734 G A CSPP1 Silent p.K75K 0.22 TCGA-CD-8527-01 8 75157411 75157411 C T JPH1 Splice_Site p.X420_splice 0.17 TCGA-CD-8527-01 9 131329031 131329031 T C SPTAN1 Silent p.S4S 0.45 TCGA-CD-8527-01 9 8518099 8518099 G A PTPRD Missense_Mutation p.S431L 0.45 deleterious(0.01) probably_damaging(0.995) TCGA-CD-8527-01 9 94808310 94808310 C G SPTLC1 Missense_Mutation p.K369N 0.63 tolerated(0.73) benign(0.034) TCGA-CD-8527-01 X 108631760 108631760 T A GUCY2F Missense_Mutation p.M972L 0.12 tolerated(0.05) benign(0.005) TCGA-CD-8527-01 X 108911351 108911351 C T ACSL4 Missense_Mutation p.G473S 0.51 tolerated(0.34) probably_damaging(1) TCGA-CD-8527-01 X 120181760 120181760 C T GLUD2 Silent p.F74F 0.57 TCGA-CD-8527-01 X 130222707 130222707 G A ARHGAP36 Missense_Mutation p.R531H 0.42 tolerated_low_confidence(0.12) benign(0.004) TCGA-CD-8527-01 X 134426208 134426208 T A ZNF75D Missense_Mutation p.R201S 0.22 tolerated(0.12) benign(0.026) TCGA-CD-8527-01 X 1407666 1407666 G A CSF2RA Missense_Mutation p.A120T 0.72 deleterious(0) probably_damaging(0.998) TCGA-CD-8527-01 X 141291507 141291507 C T MAGEC2 Silent p.Q89Q 0.31 TCGA-CD-8527-01 X 14548175 14548175 C T GLRA2 5'UTR 0.39 TCGA-CD-8527-01 X 19705799 19705799 G T SH3KBP1 Intron 0.28 TCGA-CD-8527-01 X 30254145 30254145 A T MAGEB3 Missense_Mutation p.K35M 0.20 deleterious(0.04) benign(0.063) TCGA-CD-8527-01 X 37028749 37028749 G C FAM47C Missense_Mutation p.E756Q 0.45 tolerated(0.05) benign(0.001) TCGA-CD-8527-01 X 48054788 48054788 C T SSX5 Missense_Mutation p.G3R 0.22 tolerated_low_confidence(0.1) probably_damaging(0.933) TCGA-CD-8527-01 X 49076976 49076976 C A CACNA1F Missense_Mutation p.G792V 0.29 tolerated(0.23) benign(0) TCGA-CD-8527-01 X 64722868 64722868 G A ZC3H12B Missense_Mutation p.V764M 0.57 tolerated(0.78) benign(0.001) TCGA-CD-8527-01 X 67339099 67339099 A T OPHN1 Missense_Mutation p.F451Y 0.67 tolerated(1) probably_damaging(0.985) TCGA-CD-8527-01 X 86069814 86069814 A G DACH2 Missense_Mutation p.D554G 0.31 deleterious(0) benign(0.119) TCGA-CD-8528-01 10 53459329 53459329 G A CSTF2T 5'UTR 0.27 TCGA-CD-8528-01 11 117651260 117651260 G A DSCAML1 Silent p.T164T 0.44 TCGA-CD-8528-01 11 3115056 3115056 C T OSBPL5 Missense_Mutation p.G577R 0.40 deleterious(0) probably_damaging(0.989) TCGA-CD-8528-01 11 48510483 48510483 G A OR4A47 Missense_Mutation p.V47I 0.38 tolerated_low_confidence(0.65) benign(0.013) TCGA-CD-8528-01 11 56237295 56237295 G A OR5M3 Missense_Mutation p.R227C 0.46 tolerated(0.07) benign(0.047) TCGA-CD-8528-01 11 89867900 89867900 C T NAALAD2 5'UTR 0.51 TCGA-CD-8528-01 12 124416550 124416550 C T DNAH10 Silent p.I4279I 0.34 TCGA-CD-8528-01 12 22001093 22001093 C T ABCC9 Missense_Mutation p.E953K 0.13 tolerated(0.12) benign(0.126) TCGA-CD-8528-01 12 2788847 2788847 C T CACNA1C Missense_Mutation p.R1825C 0.45 deleterious_low_confidence(0) possibly_damaging(0.894) TCGA-CD-8528-01 12 40114807 40114807 C T C12orf40 Silent p.C571C 0.34 TCGA-CD-8528-01 12 41387064 41387064 C T CNTN1 Silent p.D702D 0.16 TCGA-CD-8528-01 12 64521659 64521659 G A SRGAP1 Silent p.E853E 0.21 TCGA-CD-8528-01 12 6748124 6748124 C T ACRBP Missense_Mutation p.R502Q 0.17 tolerated(0.81) benign(0.03) TCGA-CD-8528-01 12 6958779 6958779 C G CDCA3 Missense_Mutation p.S165T 0.33 tolerated(0.08) possibly_damaging(0.56) TCGA-CD-8528-01 12 83251144 83251144 T G TMTC2 Missense_Mutation p.F147V 0.18 deleterious(0.01) possibly_damaging(0.862) TCGA-CD-8528-01 13 113212621 113212621 C T TUBGCP3 Missense_Mutation p.R146Q 0.30 tolerated(0.05) benign(0.208) TCGA-CD-8528-01 13 25883397 25883397 C T NUPL1 Missense_Mutation p.T88I 0.50 deleterious(0.01) benign(0.21) TCGA-CD-8528-01 14 101491392 101491392 G A MIR380 RNA 0.26 TCGA-CD-8528-01 14 105398406 105398406 C T PLD4 Silent p.R372R 0.30 TCGA-CD-8528-01 14 55529793 55529793 G A MAPK1IP1L Missense_Mutation p.G159E 0.25 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-CD-8528-01 15 22473324 22473324 C T IGHV4OR15-8 Silent p.L10L 0.22 TCGA-CD-8528-01 15 25463997 25463997 G T SNORD115-28 5'Flank 0.17 TCGA-CD-8528-01 15 25928567 25928567 G T ATP10A Missense_Mutation p.Q1120K 0.27 tolerated(0.09) benign(0.016) TCGA-CD-8528-01 16 20793081 20793081 C T ACSM3 Nonsense_Mutation p.R331* 0.29 TCGA-CD-8528-01 16 231013 231013 G A HBQ1 Missense_Mutation p.R112Q 0.27 tolerated(0.59) benign(0.042) TCGA-CD-8528-01 16 31131779 31131779 C T KAT8 Missense_Mutation p.R136C 0.20 deleterious(0) probably_damaging(0.973) TCGA-CD-8528-01 16 48247385 48247385 G A ABCC11 Missense_Mutation p.T442M 0.17 deleterious(0) benign(0.1) TCGA-CD-8528-01 16 87790012 87790012 C T KLHDC4 Missense_Mutation p.G88D 0.09 deleterious(0) probably_damaging(0.994) TCGA-CD-8528-01 16 90162651 90162651 C T TUBB8P7 RNA 0.31 TCGA-CD-8528-01 17 19689396 19689396 G A ULK2 Missense_Mutation p.P702L 0.62 deleterious(0.04) probably_damaging(0.987) TCGA-CD-8528-01 17 20319867 20319867 A G SRP68P3 RNA 0.28 TCGA-CD-8528-01 17 27844528 27844528 C T TAOK1 Nonsense_Mutation p.Q588* 0.48 TCGA-CD-8528-01 17 29281526 29281526 G T ADAP2 Missense_Mutation p.A279S 0.57 tolerated(0.12) benign(0.102) TCGA-CD-8528-01 17 40864502 40864503 CT - EZH1 Frame_Shift_Del p.E402Gfs*2 0.42 TCGA-CD-8528-01 17 60061595 60061595 C G MED13 Missense_Mutation p.S942T 0.20 deleterious(0) probably_damaging(0.991) TCGA-CD-8528-01 17 7231011 7231011 C T NEURL4 Missense_Mutation p.V159M 0.09 deleterious(0) possibly_damaging(0.765) TCGA-CD-8528-01 17 7578479 7578479 G T TP53 Missense_Mutation p.P151T 0.68 deleterious(0) probably_damaging(0.983) TCGA-CD-8528-01 17 76168001 76168001 C T SYNGR2 Missense_Mutation p.P220L 0.55 tolerated(0.1) possibly_damaging(0.755) TCGA-CD-8528-01 18 3879957 3879957 C A DLGAP1 Nonsense_Mutation p.E38* 0.28 TCGA-CD-8528-01 18 65181679 65181679 A G DSEL Missense_Mutation p.L66P 0.29 deleterious_low_confidence(0.04) benign(0) TCGA-CD-8528-01 18 77171139 77171139 C T NFATC1 Silent p.H275H 0.24 TCGA-CD-8528-01 19 1079752 1079752 G T HMHA1 Silent p.T491T 0.43 TCGA-CD-8528-01 19 14705596 14705596 T C CLEC17A Silent p.C129C 0.25 TCGA-CD-8528-01 19 17662662 17662662 C G FAM129C Intron 0.29 TCGA-CD-8528-01 19 37488168 37488168 T C ZNF568 Silent p.H461H 0.50 TCGA-CD-8528-01 19 40900427 40900427 C T PRX Missense_Mutation p.D1278N 0.50 tolerated(0.1) possibly_damaging(0.741) TCGA-CD-8528-01 19 41600977 41600977 G C CYP2A13 Missense_Mutation p.K425N 0.33 deleterious(0.02) probably_damaging(0.972) TCGA-CD-8528-01 19 51171798 51171798 G A SHANK1 Missense_Mutation p.P1140L 0.33 unknown(0) TCGA-CD-8528-01 19 54823401 54823401 T C LILRA5 Missense_Mutation p.T48A 0.16 deleterious(0.02) benign(0.011) TCGA-CD-8528-01 19 853309 853309 G A ELANE Missense_Mutation p.R91Q 0.29 tolerated(0.36) benign(0.002) TCGA-CD-8528-01 1 103488310 103488310 A G COL11A1 Silent p.I411I 0.17 TCGA-CD-8528-01 1 117963257 117963257 C A MAN1A2 Missense_Mutation p.L281I 0.15 tolerated(0.06) probably_damaging(0.984) TCGA-CD-8528-01 1 12837182 12837182 G A PRAMEF12 Missense_Mutation p.V298I 0.25 deleterious(0.04) possibly_damaging(0.899) TCGA-CD-8528-01 1 12855952 12855952 C T PRAMEF1 Missense_Mutation p.T411M 0.05 tolerated(0.11) benign(0.009) TCGA-CD-8528-01 1 146696558 146696558 A G FMO5 Missense_Mutation p.C22R 0.15 deleterious(0) probably_damaging(1) TCGA-CD-8528-01 1 150532570 150532570 C T ADAMTSL4 Silent p.P1041P 0.18 TCGA-CD-8528-01 1 152277422 152277422 T A FLG Nonsense_Mutation p.R3314* 0.15 TCGA-CD-8528-01 1 152285533 152285533 C T FLG Missense_Mutation p.G610E 0.40 probably_damaging(1) TCGA-CD-8528-01 1 161092952 161092952 G A DEDD Missense_Mutation p.R165W 0.29 deleterious(0.01) possibly_damaging(0.908) TCGA-CD-8528-01 1 17323520 17323520 C T ATP13A2 Missense_Mutation p.R397H 0.33 deleterious(0.01) benign(0.052) TCGA-CD-8528-01 1 173556830 173556830 C T SLC9C2 Missense_Mutation p.R166H 0.28 tolerated(0.6) benign(0.001) TCGA-CD-8528-01 1 18149500 18149500 C T ACTL8 5'UTR 0.26 TCGA-CD-8528-01 1 206566910 206566910 C G SRGAP2 Silent p.A151A 0.21 TCGA-CD-8528-01 1 207697156 207697156 C T CR1 Missense_Mutation p.P230S 0.21 deleterious(0.02) possibly_damaging(0.629) TCGA-CD-8528-01 1 214819047 214819047 A G CENPF Missense_Mutation p.Q2045R 0.44 benign(0.439) TCGA-CD-8528-01 1 247320073 247320073 T A ZNF124 Missense_Mutation p.H222L 0.25 deleterious(0) probably_damaging(0.998) TCGA-CD-8528-01 1 248569964 248569964 G T OR2T1 Missense_Mutation p.E223D 0.35 deleterious(0.01) benign(0.309) TCGA-CD-8528-01 1 8390936 8390936 C T SLC45A1 Silent p.D461D 0.23 TCGA-CD-8528-01 20 10639259 10639259 C T JAG1 Missense_Mutation p.R184H 0.32 deleterious(0) probably_damaging(1) TCGA-CD-8528-01 20 23016919 23016919 G A SSTR4 Missense_Mutation p.V267I 0.28 deleterious(0.01) possibly_damaging(0.821) TCGA-CD-8528-01 20 30432190 30432190 G A FOXS1 3'UTR 0.31 TCGA-CD-8528-01 20 43850987 43850987 C A SEMG2 Silent p.L238L 0.14 TCGA-CD-8528-01 20 47639687 47639687 A C ARFGEF2 Missense_Mutation p.K1575T 0.33 deleterious(0.03) benign(0.206) TCGA-CD-8528-01 20 54579014 54579014 C T CBLN4 Missense_Mutation p.A72T 0.22 deleterious(0) probably_damaging(0.99) TCGA-CD-8528-01 20 57766931 57766931 C T ZNF831 Missense_Mutation p.A286V 0.21 tolerated(0.51) benign(0.023) TCGA-CD-8528-01 20 60768650 60768650 G A MTG2 Silent p.P58P 0.45 TCGA-CD-8528-01 21 33867373 33867373 G A EVA1C Missense_Mutation p.R224Q 0.26 tolerated(0.22) benign(0.041) TCGA-CD-8528-01 22 21334404 21334404 G A AIFM3 Missense_Mutation p.R583Q 0.33 tolerated(0.31) possibly_damaging(0.768) TCGA-CD-8528-01 22 30812329 30812329 C T SEC14L2 Nonsense_Mutation p.Q340* 0.23 TCGA-CD-8528-01 22 30891385 30891385 G A SEC14L4 Silent p.Y93Y 0.27 TCGA-CD-8528-01 2 1507810 1507810 C T TPO Missense_Mutation p.A826V 0.19 deleterious(0.04) benign(0.015) TCGA-CD-8528-01 2 179417913 179417913 T C TTN Missense_Mutation p.N29905S 0.07 TCGA-CD-8528-01 2 208988895 208988895 C T CRYGD Missense_Mutation p.D65N 0.38 deleterious(0.04) benign(0.019) TCGA-CD-8528-01 2 224463718 224463718 C T SCG2 Missense_Mutation p.D95N 0.18 tolerated(0.05) benign(0.091) TCGA-CD-8528-01 2 24261172 24261172 A C C2orf44 Missense_Mutation p.L398R 0.48 deleterious(0.05) benign(0.273) TCGA-CD-8528-01 2 24964833 24964833 G A NCOA1 Missense_Mutation p.G1162S 0.34 deleterious(0.02) possibly_damaging(0.779) TCGA-CD-8528-01 2 26677608 26677608 C T DRC1 Silent p.S671S 0.41 TCGA-CD-8528-01 3 1414148 1414148 G T CNTN6 Missense_Mutation p.R553M 0.18 tolerated(0.28) probably_damaging(0.969) TCGA-CD-8528-01 3 142567080 142567080 C T PCOLCE2 Missense_Mutation p.A143T 0.15 deleterious(0.05) benign(0.135) TCGA-CD-8528-01 3 154832866 154832866 C T MME Missense_Mutation p.R94C 0.13 deleterious(0) possibly_damaging(0.683) TCGA-CD-8528-01 3 192053209 192053209 G A FGF12 Nonsense_Mutation p.Q119* 0.36 TCGA-CD-8528-01 3 40351302 40351302 C T EIF1B 5'UTR 0.31 TCGA-CD-8528-01 3 49680203 49680203 C A BSN Missense_Mutation p.P379H 0.34 unknown(0) TCGA-CD-8528-01 4 108991888 108991888 A G LEF1 Silent p.Y349Y 0.13 TCGA-CD-8528-01 4 1345537 1345537 C G UVSSA Missense_Mutation p.A155G 0.36 deleterious(0.03) probably_damaging(0.928) TCGA-CD-8528-01 4 174450016 174450016 C T HAND2 Missense_Mutation p.R142H 0.43 deleterious(0) probably_damaging(0.997) TCGA-CD-8528-01 4 187557880 187557880 G A FAT1 Silent p.T1277T 0.25 TCGA-CD-8528-01 4 79396677 79396677 C T FRAS1 Missense_Mutation p.R2590C 0.14 probably_damaging(0.929) TCGA-CD-8528-01 4 86893327 86893327 T A ARHGAP24 Intron 0.58 TCGA-CD-8528-01 5 129241195 129241195 G A CHSY3 Missense_Mutation p.A225T 0.19 tolerated(0.19) benign(0.029) TCGA-CD-8528-01 5 145969504 145969504 G T PPP2R2B 3'UTR 0.47 TCGA-CD-8528-01 5 150696616 150696616 A C SLC36A2 Missense_Mutation p.L405R 0.21 deleterious(0) probably_damaging(0.998) TCGA-CD-8528-01 5 35965682 35965682 T C UGT3A1 Missense_Mutation p.M217V 0.37 tolerated(0.41) benign(0.001) TCGA-CD-8528-01 5 37170433 37170433 G A C5orf42 Silent p.L2058L 0.40 TCGA-CD-8528-01 6 111652933 111652933 A G REV3L Silent p.L2660L 0.39 TCGA-CD-8528-01 6 112420481 112420481 T G FAM229B 5'UTR 0.10 TCGA-CD-8528-01 6 12125570 12125570 G A HIVEP1 Missense_Mutation p.V1848I 0.18 tolerated(0.23) benign(0.005) TCGA-CD-8528-01 6 31626728 31626728 G A C6orf47 3'UTR 0.17 TCGA-CD-8528-01 6 33656557 33656557 A T ITPR3 Silent p.T2231T 0.08 TCGA-CD-8528-01 6 49704128 49704128 G C CRISP3 Silent p.P78P 0.17 TCGA-CD-8528-01 6 8097522 8097522 T C EEF1E1 Missense_Mutation p.N89S 0.18 tolerated(0.15) benign(0.002) TCGA-CD-8528-01 7 148701057 148701057 G A PDIA4 Silent p.D589D 0.33 TCGA-CD-8528-01 7 151684285 151684285 C T GALNTL5 Missense_Mutation p.R193W 0.47 tolerated(0.07) probably_damaging(1) TCGA-CD-8528-01 7 157931093 157931093 C T PTPRN2 Missense_Mutation p.G342D 0.39 tolerated(0.6) benign(0.003) TCGA-CD-8528-01 7 157959936 157959936 C T PTPRN2 Silent p.T199T 0.17 TCGA-CD-8528-01 7 31917586 31917586 T G PDE1C Missense_Mutation p.L223F 0.11 tolerated(0.1) probably_damaging(0.913) TCGA-CD-8528-01 7 86542424 86542424 C T KIAA1324L Missense_Mutation p.G610S 0.43 tolerated(0.29) benign(0.181) TCGA-CD-8528-01 8 113418956 113418956 G T CSMD3 Missense_Mutation p.A1869D 0.12 deleterious(0) possibly_damaging(0.889) TCGA-CD-8528-01 8 132997219 132997219 G A EFR3A Missense_Mutation p.R594H 0.20 deleterious(0.01) probably_damaging(0.982) TCGA-CD-8528-01 8 23429083 23429083 C T SLC25A37 Silent p.A244A 0.19 TCGA-CD-8528-01 8 36641910 36641910 G A KCNU1 5'UTR 0.45 TCGA-CD-8528-01 8 36698509 36698509 C T KCNU1 Missense_Mutation p.T564M 0.14 tolerated(0.06) benign(0.28) TCGA-CD-8528-01 8 48889314 48889314 T C MCM4 Silent p.T856T 0.18 TCGA-CD-8528-01 8 59535981 59535981 A T NSMAF Silent p.L184L 0.27 TCGA-CD-8528-01 9 101533322 101533322 C T ANKS6 Missense_Mutation p.V610I 0.65 tolerated(0.71) benign(0.001) TCGA-CD-8528-01 9 117825304 117825304 G A TNC Missense_Mutation p.R1309C 0.17 deleterious(0.04) benign(0.011) TCGA-CD-8528-01 9 119976939 119976939 C T ASTN2 Missense_Mutation p.R238H 0.16 deleterious_low_confidence(0) unknown(0) TCGA-CD-8528-01 9 123943569 123943569 T A RAB14 3'UTR 0.21 TCGA-CD-8528-01 9 140777327 140777327 C T CACNA1B Silent p.V174V 0.18 TCGA-CD-8528-01 9 40774433 40774433 T A ZNF658 Missense_Mutation p.K281I 0.45 deleterious(0.01) possibly_damaging(0.548) TCGA-CD-8528-01 9 96428068 96428068 G A PHF2 Missense_Mutation p.V680M 0.52 deleterious(0.05) unknown(0) TCGA-CD-8528-01 X 105450999 105450999 C T MUM1L1 Missense_Mutation p.P525L 0.16 tolerated(0.53) benign(0.002) TCGA-CD-8528-01 X 123540329 123540329 C T TENM1 Missense_Mutation p.E1665K 0.17 tolerated(0.23) benign(0.018) TCGA-CD-8528-01 X 16142390 16142390 G T GRPR Missense_Mutation p.R105I 0.30 deleterious(0.02) benign(0.36) TCGA-CD-8528-01 X 37029349 37029349 C A FAM47C Missense_Mutation p.P956T 0.15 tolerated(0.09) possibly_damaging(0.599) TCGA-CD-8528-01 X 83359569 83359569 G A RPS6KA6 Missense_Mutation p.R518W 0.30 deleterious(0) probably_damaging(0.981) TCGA-CD-8529-01 10 102056924 102056924 G A PKD2L1 Missense_Mutation p.S333F 0.08 deleterious(0.02) benign(0.443) TCGA-CD-8529-01 10 102739929 102739929 G A SEMA4G Silent p.L393L 0.11 TCGA-CD-8529-01 10 112838907 112838907 A C ADRA2A Missense_Mutation p.K385Q 0.09 deleterious(0) probably_damaging(0.961) TCGA-CD-8529-01 10 114799863 114799863 C A TCF7L2 Missense_Mutation p.S177Y 0.23 deleterious(0.02) probably_damaging(0.926) TCGA-CD-8529-01 10 117884837 117884837 G T GFRA1 Missense_Mutation p.T222K 0.27 deleterious(0.01) benign(0.226) TCGA-CD-8529-01 10 124036316 124036316 G A BTBD16 Missense_Mutation p.R10Q 0.09 tolerated(0.14) benign(0.1) TCGA-CD-8529-01 10 127418920 127418920 C T EDRF1 Silent p.C360C 0.09 TCGA-CD-8529-01 10 13154606 13154606 G C OPTN Missense_Mutation p.E175Q 0.07 deleterious(0.01) possibly_damaging(0.632) TCGA-CD-8529-01 10 16553049 16553049 C T PTER Missense_Mutation p.R282C 0.18 deleterious(0.04) benign(0.035) TCGA-CD-8529-01 10 17277193 17277193 G A VIM Missense_Mutation p.R345H 0.12 deleterious(0.02) benign(0.284) TCGA-CD-8529-01 10 24874802 24874802 G A ARHGAP21 Silent p.I1472I 0.11 TCGA-CD-8529-01 10 50872977 50872977 T C CHAT Missense_Mutation p.V711A 0.11 deleterious(0) possibly_damaging(0.615) TCGA-CD-8529-01 10 55955580 55955580 T A PCDH15 Missense_Mutation p.N390Y 0.12 deleterious(0) probably_damaging(0.995) TCGA-CD-8529-01 10 61029744 61029744 G T FAM13C Silent p.R240R 0.09 TCGA-CD-8529-01 10 63170177 63170177 G A TMEM26 Missense_Mutation p.P337L 0.06 tolerated(0.41) benign(0) TCGA-CD-8529-01 10 70507010 70507010 G A CCAR1 Missense_Mutation p.R204K 0.07 tolerated(0.08) probably_damaging(0.946) TCGA-CD-8529-01 10 98325076 98325076 C T TM9SF3 Missense_Mutation p.D136N 0.11 deleterious(0.02) benign(0.169) TCGA-CD-8529-01 11 10024150 10024150 C T SBF2 Missense_Mutation p.D236N 0.10 deleterious(0) probably_damaging(0.948) TCGA-CD-8529-01 11 104825631 104825631 C T CASP4 Silent p.L35L 0.10 TCGA-CD-8529-01 11 10506555 10506555 C T AMPD3 Missense_Mutation p.H269Y 0.09 tolerated(0.95) benign(0.01) TCGA-CD-8529-01 11 117261589 117261589 C G CEP164 Silent p.V677V 0.11 TCGA-CD-8529-01 11 118630742 118630742 C G DDX6 Missense_Mutation p.L251F 0.17 deleterious(0) probably_damaging(0.996) TCGA-CD-8529-01 11 123524513 123524513 C T SCN3B 5'UTR 0.08 TCGA-CD-8529-01 11 18636837 18636837 A T SPTY2D1 Silent p.S328S 0.08 TCGA-CD-8529-01 11 18738373 18738373 G A IGSF22 Missense_Mutation p.T383M 0.08 tolerated(0.1) probably_damaging(1) TCGA-CD-8529-01 11 21250984 21250984 C T NELL1 Silent p.N511N 0.18 TCGA-CD-8529-01 11 31815288 31815288 T C PAX6 Silent p.R290R 0.09 TCGA-CD-8529-01 11 31816307 31816307 C G PAX6 Missense_Mutation p.E199Q 0.12 tolerated(0.12) benign(0.011) TCGA-CD-8529-01 11 32417870 32417870 A T WT1 Silent p.A394A 0.09 TCGA-CD-8529-01 11 35828032 35828035 AACA - TRIM44 3'UTR 0.14 TCGA-CD-8529-01 11 36680701 36680701 G A C11orf74 Missense_Mutation p.D211N 0.07 tolerated(1) benign(0.003) TCGA-CD-8529-01 11 4156468 4156468 C G RRM1 Missense_Mutation p.L720V 0.10 deleterious_low_confidence(0.01) benign(0.072) TCGA-CD-8529-01 11 44931284 44931284 G A TSPAN18 Missense_Mutation p.G31D 0.11 deleterious(0) probably_damaging(0.999) TCGA-CD-8529-01 11 46419435 46419435 C A AMBRA1 Silent p.L1064L 0.08 TCGA-CD-8529-01 11 47447454 47447454 G A PSMC3 Silent p.I41I 0.10 TCGA-CD-8529-01 11 56380424 56380424 G A OR5M1 Silent p.I185I 0.08 TCGA-CD-8529-01 11 56431887 56431887 G T OR5AR1 Silent p.G242G 0.10 TCGA-CD-8529-01 11 57076370 57076370 C A TNKS1BP1 Missense_Mutation p.R1272M 0.06 deleterious(0) probably_damaging(0.999) TCGA-CD-8529-01 11 57076371 57076371 T C TNKS1BP1 Missense_Mutation p.R1272G 0.06 deleterious(0.04) probably_damaging(0.998) TCGA-CD-8529-01 11 5757906 5757906 A T OR56B1 Missense_Mutation p.I54F 0.07 deleterious(0) probably_damaging(0.928) TCGA-CD-8529-01 11 57946985 57946985 G C OR9Q1 Missense_Mutation p.W23C 0.10 deleterious(0) possibly_damaging(0.664) TCGA-CD-8529-01 11 65298186 65298186 G C SCYL1 Missense_Mutation p.K312N 0.15 deleterious(0) benign(0.41) TCGA-CD-8529-01 11 66114059 66114059 G T B3GNT1 Missense_Mutation p.P320T 0.08 tolerated(0.63) benign(0.013) TCGA-CD-8529-01 11 7060959 7060959 A C NLRP14 Missense_Mutation p.I102L 0.08 tolerated(0.44) benign(0.001) TCGA-CD-8529-01 11 7064426 7064426 C A NLRP14 Missense_Mutation p.T390K 0.08 tolerated(0.35) benign(0.295) TCGA-CD-8529-01 11 792877 792877 C A SLC25A22 Silent p.G135G 0.24 TCGA-CD-8529-01 11 92577512 92577512 A C FAT3 Missense_Mutation p.D3660A 0.11 probably_damaging(0.928) TCGA-CD-8529-01 12 104149101 104149101 G C STAB2 Missense_Mutation p.A2246P 0.09 deleterious(0.02) benign(0.089) TCGA-CD-8529-01 12 106824074 106824074 T A POLR3B Missense_Mutation p.F429L 0.11 deleterious(0.01) possibly_damaging(0.803) TCGA-CD-8529-01 12 113633586 113633586 C G IQCD Missense_Mutation p.E280Q 0.08 deleterious(0.01) possibly_damaging(0.472) TCGA-CD-8529-01 12 116429002 116429002 T A MED13L Missense_Mutation p.T1253S 0.12 tolerated(0.47) unknown(0) TCGA-CD-8529-01 12 122669241 122669241 G C LRRC43 Missense_Mutation p.R109T 0.11 deleterious(0) probably_damaging(0.936) TCGA-CD-8529-01 12 124156631 124156631 G T TCTN2 Silent p.V73V 0.06 TCGA-CD-8529-01 12 13103126 13103126 G A GPRC5D Missense_Mutation p.L65F 0.09 tolerated(0.26) probably_damaging(0.958) TCGA-CD-8529-01 12 2019093 2019093 G A CACNA2D4 Silent p.H155H 0.16 TCGA-CD-8529-01 12 41410613 41410613 G A CNTN1 Missense_Mutation p.E772K 0.08 tolerated(0.14) benign(0.229) TCGA-CD-8529-01 12 52714937 52714937 G A KRT83 Silent p.A61A 0.09 TCGA-CD-8529-01 12 56030784 56030784 G A OR10P1 Missense_Mutation p.V37I 0.08 tolerated(0.92) benign(0.008) TCGA-CD-8529-01 12 56718164 56718164 C G PAN2 Missense_Mutation p.Q614H 0.08 deleterious(0) probably_damaging(0.983) TCGA-CD-8529-01 12 68642528 68642528 A C IL22 3'UTR 0.09 TCGA-CD-8529-01 12 70049350 70049350 G - BEST3 Frame_Shift_Del p.T449Pfs*36 0.09 TCGA-CD-8529-01 12 70953003 70953003 C G PTPRB Intron 0.09 TCGA-CD-8529-01 12 7254481 7254481 G A C1RL Intron 0.06 TCGA-CD-8529-01 12 81657147 81657147 C T PPFIA2 Missense_Mutation p.R1193H 0.08 deleterious(0) probably_damaging(0.986) TCGA-CD-8529-01 13 101278038 101278038 C A TMTC4 Splice_Site p.X565_splice 0.38 TCGA-CD-8529-01 13 103518486 103518486 C T ERCC5 Intron 0.09 TCGA-CD-8529-01 13 110826862 110826862 G A COL4A1 Silent p.L1113L 0.07 TCGA-CD-8529-01 13 111955391 111955391 C G ARHGEF7 Missense_Mutation p.D624E 0.12 tolerated(0.94) benign(0.002) TCGA-CD-8529-01 13 25743820 25743820 G A AMER2 Silent p.V646V 0.08 TCGA-CD-8529-01 13 32911752 32911752 C - BRCA2 Frame_Shift_Del p.P1088Lfs*16 0.13 TCGA-CD-8529-01 13 39264430 39264430 C G FREM2 Missense_Mutation p.F983L 0.09 deleterious(0.04) possibly_damaging(0.841) TCGA-CD-8529-01 13 58299502 58299502 A C PCDH17 3'UTR 0.19 TCGA-CD-8529-01 13 61986911 61986911 G T PCDH20 Missense_Mutation p.L441M 0.11 deleterious(0) probably_damaging(0.98) TCGA-CD-8529-01 13 67801945 67801945 A G PCDH9 Silent p.L210L 0.10 TCGA-CD-8529-01 13 77581361 77581386 CTTTTGGTCAGGAATTAGTACTTCTT - FBXL3 Frame_Shift_Del p.E394Vfs*2 0.10 TCGA-CD-8529-01 13 77651284 77651284 T G MYCBP2 Missense_Mutation p.Q3870P 0.07 probably_damaging(0.942) TCGA-CD-8529-01 13 77834716 77834716 G A MYCBP2 Missense_Mutation p.R584W 0.17 probably_damaging(0.992) TCGA-CD-8529-01 13 96086276 96086276 G A CLDN10 Silent p.P63P 0.16 TCGA-CD-8529-01 14 102493538 102493538 G C DYNC1H1 Missense_Mutation p.L2933F 0.08 probably_damaging(0.978) TCGA-CD-8529-01 14 102510823 102510823 C A DYNC1H1 Silent p.G4299G 0.11 TCGA-CD-8529-01 14 105416425 105416425 C T AHNAK2 Missense_Mutation p.S1788N 0.08 probably_damaging(0.942) TCGA-CD-8529-01 14 20404690 20404690 C A OR4K1 Missense_Mutation p.L289M 0.08 deleterious(0) probably_damaging(0.921) TCGA-CD-8529-01 14 20444560 20444560 C G OR4K15 Missense_Mutation p.L295V 0.05 deleterious(0.03) possibly_damaging(0.654) TCGA-CD-8529-01 14 20978867 20978867 C A RNASE10 Silent p.G79G 0.13 TCGA-CD-8529-01 14 21863166 21863166 C T CHD8 Missense_Mutation p.M1765I 0.07 tolerated(0.16) benign(0.028) TCGA-CD-8529-01 14 23235817 23235817 A T OXA1L Missense_Mutation p.Q29H 0.08 tolerated_low_confidence(0.14) benign(0.071) TCGA-CD-8529-01 14 24843060 24843060 G A NFATC4 Silent p.V636V 0.19 TCGA-CD-8529-01 14 32560468 32560468 C G ARHGAP5 Missense_Mutation p.A198G 0.09 tolerated(0.09) probably_damaging(0.966) TCGA-CD-8529-01 14 35782239 35782239 G C PSMA6 Missense_Mutation p.D188H 0.11 deleterious(0.02) benign(0.038) TCGA-CD-8529-01 14 39510066 39510066 C G SEC23A Missense_Mutation p.G671A 0.12 deleterious(0.01) probably_damaging(0.962) TCGA-CD-8529-01 14 50074222 50074222 A G LRR1 Silent p.S129S 0.07 TCGA-CD-8529-01 14 57858401 57858401 T A NAA30 Nonsense_Mutation p.Y242* 0.11 TCGA-CD-8529-01 14 68234421 68234421 C A ZFYVE26 Missense_Mutation p.Q1930H 0.08 deleterious(0) possibly_damaging(0.861) TCGA-CD-8529-01 14 70925356 70925356 C T ADAM21 Silent p.Y380Y 0.08 TCGA-CD-8529-01 14 73544115 73544115 G C RBM25 Missense_Mutation p.L65F 0.16 possibly_damaging(0.852) TCGA-CD-8529-01 14 73544125 73544125 A C RBM25 Missense_Mutation p.K69Q 0.12 probably_damaging(0.948) TCGA-CD-8529-01 14 74388851 74388851 C T ZNF410 Silent p.S421S 0.12 TCGA-CD-8529-01 14 75513248 75513248 T C MLH3 Silent p.S1037S 0.09 TCGA-CD-8529-01 14 76249678 76249678 C G TTLL5 Missense_Mutation p.Q931E 0.10 tolerated(0.99) benign(0.002) TCGA-CD-8529-01 14 76905762 76905762 C - ESRRB Frame_Shift_Del p.P23Rfs*139 0.08 TCGA-CD-8529-01 14 78392220 78392220 C A ADCK1 Nonsense_Mutation p.Y374* 0.06 TCGA-CD-8529-01 14 88729835 88729835 G A KCNK10 Missense_Mutation p.P38L 0.08 tolerated_low_confidence(0.21) benign(0.015) TCGA-CD-8529-01 14 89076102 89076102 C T ZC3H14 Silent p.Y684Y 0.10 TCGA-CD-8529-01 14 90429519 90429519 G C TDP1 Missense_Mutation p.E21Q 0.08 deleterious_low_confidence(0.04) probably_damaging(0.911) TCGA-CD-8529-01 14 94044294 94044294 G A UNC79 Missense_Mutation p.R596H 0.07 tolerated(0.31) benign(0.003) TCGA-CD-8529-01 14 94088842 94088842 G A UNC79 Missense_Mutation p.A1578T 0.11 tolerated_low_confidence(0.12) possibly_damaging(0.477) TCGA-CD-8529-01 15 23811185 23811185 C A MKRN3 Missense_Mutation p.P86T 0.09 tolerated(0.65) benign(0.016) TCGA-CD-8529-01 15 25302085 25302085 C T SNORD116-3 RNA 0.08 TCGA-CD-8529-01 15 25349781 25349781 A G SNORD116-30 5'Flank 0.13 TCGA-CD-8529-01 15 28358272 28358272 C T HERC2 Missense_Mutation p.R4726Q 0.09 probably_damaging(1) TCGA-CD-8529-01 15 42374530 42374530 G A PLA2G4D Silent p.L244L 0.19 TCGA-CD-8529-01 15 49044627 49044627 C A CEP152 Missense_Mutation p.G1129C 0.05 tolerated(0.08) benign(0.005) TCGA-CD-8529-01 15 51031977 51031977 C G SPPL2A Missense_Mutation p.K211N 0.12 tolerated(0.08) probably_damaging(0.925) TCGA-CD-8529-01 15 65319186 65319186 A G MTFMT Silent p.L134L 0.11 TCGA-CD-8529-01 15 65319188 65319188 G C MTFMT Missense_Mutation p.L134V 0.11 tolerated(0.11) possibly_damaging(0.524) TCGA-CD-8529-01 15 75557726 75557726 G T GOLGA6C Missense_Mutation p.R240S 0.09 tolerated(0.12) probably_damaging(0.943) TCGA-CD-8529-01 15 77771634 77771636 GTT - HMG20A In_Frame_Del p.V342del 0.11 TCGA-CD-8529-01 15 79058696 79058696 G T ADAMTS7 Missense_Mutation p.T1186K 0.21 tolerated(0.18) benign(0.017) TCGA-CD-8529-01 15 83807995 83807995 C T HDGFRP3 3'UTR 0.15 TCGA-CD-8529-01 15 85197506 85197506 G A WDR73 5'UTR 0.17 TCGA-CD-8529-01 15 89868908 89868908 C A POLG Silent p.R574R 0.06 TCGA-CD-8529-01 15 91424172 91424172 A C FURIN Missense_Mutation p.K565T 0.07 tolerated(0.11) benign(0.197) TCGA-CD-8529-01 15 91475027 91475027 C T HDDC3 Missense_Mutation p.E106K 0.06 tolerated(0.07) benign(0.03) TCGA-CD-8529-01 16 15098145 15098145 C T PDXDC1 Missense_Mutation p.T115I 0.05 deleterious(0) probably_damaging(0.993) TCGA-CD-8529-01 16 19477458 19477458 C A TMC5 Missense_Mutation p.Q514K 0.10 tolerated(0.22) benign(0.001) TCGA-CD-8529-01 16 20970669 20970669 G C DNAH3 Missense_Mutation p.S3553C 0.10 deleterious(0.01) probably_damaging(1) TCGA-CD-8529-01 16 20999373 20999373 G C DNAH3 Missense_Mutation p.H2206D 0.06 deleterious(0) probably_damaging(1) TCGA-CD-8529-01 16 21042585 21042585 C G DNAH3 Missense_Mutation p.V1741L 0.12 deleterious(0) possibly_damaging(0.744) TCGA-CD-8529-01 16 21261950 21261950 C A ANKS4B Missense_Mutation p.Q355K 0.08 deleterious(0.04) benign(0.174) TCGA-CD-8529-01 16 29816605 29816605 G T KIF22 Missense_Mutation p.A658S 0.08 tolerated(0.16) benign(0.373) TCGA-CD-8529-01 16 30364910 30364910 G A CD2BP2 Missense_Mutation p.P196L 0.13 deleterious(0.02) possibly_damaging(0.858) TCGA-CD-8529-01 16 30904233 30904233 G A BCL7C Missense_Mutation p.R70C 0.19 tolerated(0.05) probably_damaging(0.973) TCGA-CD-8529-01 16 31382721 31382721 G A ITGAX Silent p.A636A 0.13 TCGA-CD-8529-01 16 31424270 31424270 G C ITGAD Missense_Mutation p.G607R 0.12 deleterious(0) probably_damaging(0.995) TCGA-CD-8529-01 16 334997 334998 TG - PDIA2 Frame_Shift_Del p.V221Gfs*7 0.12 TCGA-CD-8529-01 16 3533413 3533413 G A NAA60 Missense_Mutation p.D130N 0.16 tolerated(0.61) benign(0.065) TCGA-CD-8529-01 16 46746663 46746663 C G MYLK3 Missense_Mutation p.V671L 0.09 deleterious(0) probably_damaging(0.996) TCGA-CD-8529-01 16 48212523 48212523 T A ABCC11 Silent p.I1111I 0.09 TCGA-CD-8529-01 16 50813850 50813850 A T CYLD Missense_Mutation p.E471D 0.21 deleterious(0) probably_damaging(0.996) TCGA-CD-8529-01 16 54145683 54145683 A G FTO Silent p.S458S 0.11 TCGA-CD-8529-01 16 55690822 55690822 C T SLC6A2 Silent p.F72F 0.11 TCGA-CD-8529-01 16 57931344 57931344 C T CNGB1 Missense_Mutation p.V1067M 0.12 deleterious(0) probably_damaging(0.977) TCGA-CD-8529-01 16 58562514 58562514 G A CNOT1 Silent p.F2106F 0.30 TCGA-CD-8529-01 16 629087 629087 C T PIGQ Silent p.I414I 0.13 TCGA-CD-8529-01 16 66948278 66948278 G A CDH16 Silent p.Y207Y 0.19 TCGA-CD-8529-01 16 67404994 67405013 GGACACTGCTGTTGTCTCCT - LRRC36 Frame_Shift_Del p.T449Dfs*47 0.09 TCGA-CD-8529-01 16 68100496 68100496 C A DUS2 Silent p.R171R 0.06 TCGA-CD-8529-01 16 69832599 69832599 C T WWP2 Missense_Mutation p.P29S 0.07 tolerated(0.52) probably_damaging(0.996) TCGA-CD-8529-01 16 731803 731803 G C STUB1 Missense_Mutation p.E179Q 0.10 tolerated(0.23) benign(0.004) TCGA-CD-8529-01 16 84096981 84097005 GGAATCTGATAAAGTCCCAAAATGG - MBTPS1 Frame_Shift_Del p.P826Qfs*41 0.12 TCGA-CD-8529-01 16 84209796 84209796 C T DNAAF1 Silent p.D652D 0.10 TCGA-CD-8529-01 16 9892258 9892258 G A GRIN2A Silent p.G744G 0.08 TCGA-CD-8529-01 17 10544004 10544004 C A MYH3 Splice_Site p.X722_splice 0.18 TCGA-CD-8529-01 17 11696840 11696840 G A DNAH9 Silent p.V2694V 0.13 TCGA-CD-8529-01 17 12649277 12649277 C A MYOCD Nonsense_Mutation p.S338* 0.08 TCGA-CD-8529-01 17 1416808 1416808 G T INPP5K Missense_Mutation p.A67D 0.10 deleterious(0.01) probably_damaging(0.998) TCGA-CD-8529-01 17 2901595 2901595 G T RAP1GAP2 Missense_Mutation p.M375I 0.07 deleterious(0.01) possibly_damaging(0.83) TCGA-CD-8529-01 17 2901596 2901596 A G RAP1GAP2 Missense_Mutation p.I376V 0.07 deleterious(0.01) possibly_damaging(0.785) TCGA-CD-8529-01 17 29632128 29632128 G A EVI2B Missense_Mutation p.S167F 0.12 tolerated(0.06) possibly_damaging(0.683) TCGA-CD-8529-01 17 3030266 3030266 T G OR1G1 Missense_Mutation p.T194P 0.06 deleterious(0.04) benign(0.377) TCGA-CD-8529-01 17 36717777 36717777 G A SRCIN1 Missense_Mutation p.S541L 0.21 tolerated(0.79) benign(0) TCGA-CD-8529-01 17 38233842 38233842 T C THRA Missense_Mutation p.I68T 0.09 tolerated(0.07) possibly_damaging(0.501) TCGA-CD-8529-01 17 38434461 38434461 C A WIPF2 Missense_Mutation p.P436Q 0.11 deleterious(0) probably_damaging(0.998) TCGA-CD-8529-01 17 38450635 38450635 T A CDC6 Missense_Mutation p.D321E 0.08 deleterious(0) probably_damaging(1) TCGA-CD-8529-01 17 39019794 39019794 G A KRT12 Silent p.T346T 0.07 TCGA-CD-8529-01 17 39041093 39041093 G A KRT20 Silent p.R115R 0.08 TCGA-CD-8529-01 17 39684234 39684234 T A KRT19 Missense_Mutation p.D89V 0.06 deleterious(0.01) probably_damaging(0.995) TCGA-CD-8529-01 17 39767353 39767353 G T KRT16 Missense_Mutation p.R301S 0.07 deleterious(0.02) possibly_damaging(0.665) TCGA-CD-8529-01 17 39846155 39846155 G T EIF1 Missense_Mutation p.D53Y 0.12 deleterious(0.01) possibly_damaging(0.797) TCGA-CD-8529-01 17 40125917 40125917 C G CNP Missense_Mutation p.A414G 0.13 tolerated(0.14) benign(0.014) TCGA-CD-8529-01 17 41019545 41019545 G C AOC4P RNA 0.06 TCGA-CD-8529-01 17 42883207 42883207 T A GJC1 Splice_Site 0.22 TCGA-CD-8529-01 17 46136555 46136555 C G NFE2L1 Missense_Mutation p.P624R 0.08 deleterious(0) probably_damaging(0.999) TCGA-CD-8529-01 17 57290168 57290168 C T SMG8 Missense_Mutation p.P662S 0.10 tolerated(0.11) benign(0.281) TCGA-CD-8529-01 17 63010790 63010790 A G GNA13 Missense_Mutation p.V240A 0.10 deleterious(0) possibly_damaging(0.862) TCGA-CD-8529-01 17 64092744 64092744 T A CEP112 Missense_Mutation p.N217Y 0.08 deleterious(0) probably_damaging(0.999) TCGA-CD-8529-01 17 73843051 73843051 C T WBP2 Missense_Mutation p.A224T 0.09 tolerated(0.17) benign(0.104) TCGA-CD-8529-01 17 9760878 9760878 G A GLP2R Missense_Mutation p.M250I 0.06 tolerated(0.68) benign(0.004) TCGA-CD-8529-01 18 12009979 12009979 G C IMPA2 Missense_Mutation p.V110L 0.11 deleterious(0) benign(0.011) TCGA-CD-8529-01 18 28968948 28968948 T G DSG4 Missense_Mutation p.Y162D 0.10 deleterious(0) probably_damaging(0.988) TCGA-CD-8529-01 18 48591892 48591892 G C SMAD4 Missense_Mutation p.G352A 0.07 deleterious(0) probably_damaging(1) TCGA-CD-8529-01 18 67345090 67345090 G T DOK6 Splice_Site p.X137_splice 0.15 TCGA-CD-8529-01 19 10657566 10657566 C T ATG4D Missense_Mutation p.S182L 0.10 tolerated(0.42) benign(0.004) TCGA-CD-8529-01 19 15918371 15918371 C G OR10H1 Silent p.V159V 0.10 TCGA-CD-8529-01 19 19135888 19135888 C G SUGP2 Missense_Mutation p.K423N 0.06 tolerated(0.11) probably_damaging(0.925) TCGA-CD-8529-01 19 19626962 19626962 C T NDUFA13 5'UTR 0.17 TCGA-CD-8529-01 19 31767827 31767827 G T TSHZ3 Silent p.R958R 0.06 TCGA-CD-8529-01 19 33140660 33140660 G C ANKRD27 Missense_Mutation p.I47M 0.08 tolerated(0.16) benign(0.308) TCGA-CD-8529-01 19 36430947 36430947 C A LRFN3 Missense_Mutation p.A207D 0.07 deleterious(0.02) probably_damaging(0.922) TCGA-CD-8529-01 19 37441301 37441301 A T ZNF568 Nonsense_Mutation p.K416* 0.11 TCGA-CD-8529-01 19 38028263 38028263 G C ZNF793 Missense_Mutation p.A235P 0.24 deleterious(0.01) possibly_damaging(0.753) TCGA-CD-8529-01 19 38126854 38126854 T C ZFP30 Silent p.R196R 0.06 TCGA-CD-8529-01 19 38946294 38946294 G T RYR1 Missense_Mutation p.C565F 0.11 probably_damaging(0.999) TCGA-CD-8529-01 19 39322463 39322463 G A ECH1 5'UTR 0.29 TCGA-CD-8529-01 19 41117887 41117887 G A LTBP4 Missense_Mutation p.E793K 0.14 tolerated(0.07) probably_damaging(0.921) TCGA-CD-8529-01 19 41622244 41622244 A C CYP2F1 Missense_Mutation p.M51L 0.10 tolerated(1) benign(0.007) TCGA-CD-8529-01 19 41749531 41749531 G C AXL Missense_Mutation p.E486Q 0.06 tolerated(0.17) benign(0.226) TCGA-CD-8529-01 19 41884322 41884322 A G TMEM91 Silent p.R36R 0.10 TCGA-CD-8529-01 19 43430815 43430815 T C PSG7 Missense_Mutation p.K255E 0.10 tolerated(1) benign(0.207) TCGA-CD-8529-01 19 45540843 45540843 C G RELB Missense_Mutation p.A512G 0.19 deleterious_low_confidence(0) benign(0.02) TCGA-CD-8529-01 19 46056952 46056952 G A OPA3 Intron 0.23 TCGA-CD-8529-01 19 49812135 49812135 C G SLC6A16 Missense_Mutation p.E409D 0.08 tolerated(0.07) probably_damaging(0.982) TCGA-CD-8529-01 19 50397628 50397628 C T IL4I1 Missense_Mutation p.R177H 0.07 deleterious(0) probably_damaging(0.997) TCGA-CD-8529-01 19 50548172 50548172 C T ZNF473 Missense_Mutation p.P158S 0.12 tolerated(0.19) possibly_damaging(0.857) TCGA-CD-8529-01 19 50910318 50910318 C T POLD1 Missense_Mutation p.R525W 0.10 deleterious(0) probably_damaging(0.918) TCGA-CD-8529-01 19 50957402 50957402 C G MYBPC2 Silent p.G625G 0.12 TCGA-CD-8529-01 19 52496905 52496905 T G ZNF615 Missense_Mutation p.Q486P 0.11 deleterious(0) possibly_damaging(0.735) TCGA-CD-8529-01 19 52520497 52520497 C G ZNF614 Missense_Mutation p.K118N 0.10 tolerated(0.09) possibly_damaging(0.637) TCGA-CD-8529-01 19 53384030 53384030 A G ZNF320 Missense_Mutation p.F450S 0.10 deleterious(0) probably_damaging(0.999) TCGA-CD-8529-01 19 53668165 53668165 A T ZNF665 Missense_Mutation p.H526Q 0.07 tolerated(0.47) benign(0.098) TCGA-CD-8529-01 19 58596573 58596573 G C ZSCAN18 Missense_Mutation p.P394A 0.14 tolerated(0.1) benign(0.223) TCGA-CD-8529-01 19 5866954 5866954 C G FUT5 Missense_Mutation p.E261D 0.15 deleterious(0.01) probably_damaging(0.923) TCGA-CD-8529-01 19 59061952 59061952 C G TRIM28 3'UTR 0.21 TCGA-CD-8529-01 19 9011337 9011337 T A MUC16 Missense_Mutation p.S12966C 0.07 probably_damaging(0.998) TCGA-CD-8529-01 19 9046424 9046424 G A MUC16 Missense_Mutation p.S11736L 0.10 benign(0.101) TCGA-CD-8529-01 19 9082932 9082932 G T MUC16 Silent p.T2961T 0.07 TCGA-CD-8529-01 1 100741243 100741243 C T RTCA Missense_Mutation p.P248L 0.09 tolerated(0.08) benign(0.012) TCGA-CD-8529-01 1 108679250 108679250 T G SLC25A24 3'UTR 0.10 TCGA-CD-8529-01 1 109465061 109465061 G C GPSM2 Missense_Mutation p.G488A 0.09 tolerated(0.14) benign(0.017) TCGA-CD-8529-01 1 112525166 112525166 G C KCND3 Nonsense_Mutation p.Y61* 0.09 TCGA-CD-8529-01 1 117699584 117699584 T G VTCN1 Intron 0.13 TCGA-CD-8529-01 1 145747082 145747082 C G PDZK1 Silent p.S13S 0.05 TCGA-CD-8529-01 1 149882377 149882377 C A SV2A Splice_Site p.X319_splice 0.07 TCGA-CD-8529-01 1 151020376 151020376 C T C1orf56 Missense_Mutation p.P18L 0.09 tolerated_low_confidence(0.21) probably_damaging(0.958) TCGA-CD-8529-01 1 151820670 151820670 A T THEM5 Missense_Mutation p.I188N 0.23 deleterious(0.01) probably_damaging(0.962) TCGA-CD-8529-01 1 153609137 153609137 A G CHTOP Intron 0.11 TCGA-CD-8529-01 1 15386779 15386779 G A KAZN Missense_Mutation p.R343Q 0.11 tolerated(0.09) probably_damaging(0.953) TCGA-CD-8529-01 1 155034398 155034398 C T ADAM15 Missense_Mutation p.P791S 0.06 tolerated(0.11) benign(0.176) TCGA-CD-8529-01 1 155895441 155895441 G C KIAA0907 Missense_Mutation p.P292R 0.10 deleterious(0) probably_damaging(1) TCGA-CD-8529-01 1 155935499 155935499 C T ARHGEF2 Silent p.R131R 0.16 TCGA-CD-8529-01 1 157667565 157667565 T C FCRL3 Missense_Mutation p.K148R 0.10 tolerated(0.51) benign(0.016) TCGA-CD-8529-01 1 158435864 158435864 C A OR10K1 Silent p.S171S 0.05 TCGA-CD-8529-01 1 158581078 158581078 G T SPTA1 Missense_Mutation p.F2412L 0.10 deleterious(0) probably_damaging(0.998) TCGA-CD-8529-01 1 158908216 158908234 AAAGGAATAATCCCATCTA - PYHIN1 Frame_Shift_Del p.G100Rfs*90 0.10 TCGA-CD-8529-01 1 167334762 167334762 C G POU2F1 Missense_Mutation p.I62M 0.09 deleterious_low_confidence(0) unknown(0) TCGA-CD-8529-01 1 168165873 168165873 A C TIPRL Missense_Mutation p.Y202S 0.09 deleterious(0.01) probably_damaging(0.958) TCGA-CD-8529-01 1 169267893 169267893 C T NME7 Silent p.V183V 0.10 TCGA-CD-8529-01 1 169511612 169511612 G A F5 Missense_Mutation p.P906S 0.11 tolerated_low_confidence(0.4) benign(0.015) TCGA-CD-8529-01 1 169580849 169580849 G T SELP Missense_Mutation p.A343D 0.14 tolerated(0.52) benign(0.017) TCGA-CD-8529-01 1 172635113 172635113 A T FASLG Missense_Mutation p.N268I 0.10 deleterious(0) possibly_damaging(0.857) TCGA-CD-8529-01 1 175087841 175087841 G T TNN Missense_Mutation p.G844V 0.07 deleterious(0.01) possibly_damaging(0.71) TCGA-CD-8529-01 1 181022743 181022743 C G MR1 Silent p.V305V 0.09 TCGA-CD-8529-01 1 182369670 182369670 A G TEDDM1 5'UTR 0.10 TCGA-CD-8529-01 1 186645623 186645623 G A PTGS2 Nonsense_Mutation p.Q316* 0.09 TCGA-CD-8529-01 1 190195232 190195232 T C BRINP3 Missense_Mutation p.N314S 0.16 tolerated(0.18) benign(0.15) TCGA-CD-8529-01 1 192127852 192127852 G A RGS18 Missense_Mutation p.G29R 0.19 tolerated(0.34) benign(0.157) TCGA-CD-8529-01 1 200819236 200819236 T G CAMSAP2 Missense_Mutation p.I1113M 0.19 deleterious(0) probably_damaging(0.979) TCGA-CD-8529-01 1 207697126 207697126 G A CR1 Missense_Mutation p.D220N 0.11 tolerated(1) benign(0.024) TCGA-CD-8529-01 1 214795534 214795534 A T CENPF Missense_Mutation p.K326N 0.12 probably_damaging(0.986) TCGA-CD-8529-01 1 215848522 215848522 T C USH2A Missense_Mutation p.N4244S 0.12 probably_damaging(0.973) TCGA-CD-8529-01 1 216680463 216680463 G A ESRRG Silent p.L411L 0.14 TCGA-CD-8529-01 1 226555962 226555962 G - PARP1 Frame_Shift_Del p.L739* 0.16 TCGA-CD-8529-01 1 228491466 228491466 C A OBSCN Missense_Mutation p.A4610D 0.20 benign(0.285) TCGA-CD-8529-01 1 229772997 229772997 G A URB2 Silent p.K879K 0.11 TCGA-CD-8529-01 1 235976313 235976313 G C LYST Missense_Mutation p.P81A 0.08 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-CD-8529-01 1 241761205 241761205 G A OPN3 Missense_Mutation p.T263I 0.19 tolerated(0.19) benign(0.005) TCGA-CD-8529-01 1 248224783 248224783 C A OR2L3 Missense_Mutation p.P267Q 0.08 deleterious(0.01) probably_damaging(0.979) TCGA-CD-8529-01 1 248263660 248263660 G T OR2L13 3'UTR 0.20 TCGA-CD-8529-01 1 249212076 249212076 G T PGBD2 Silent p.V431V 0.09 TCGA-CD-8529-01 1 27689455 27689455 C T MAP3K6 Silent p.Q343Q 0.16 TCGA-CD-8529-01 1 39797109 39797109 G C MACF1 Intron 0.11 TCGA-CD-8529-01 1 43774661 43774661 G T TIE1 Silent p.R349R 0.09 TCGA-CD-8529-01 1 43783012 43783012 G T TIE1 Missense_Mutation p.G851V 0.08 deleterious(0) probably_damaging(1) TCGA-CD-8529-01 1 46495141 46495141 A C MAST2 Missense_Mutation p.E741A 0.12 deleterious_low_confidence(0) possibly_damaging(0.855) TCGA-CD-8529-01 1 53516207 53516207 C A SCP2 Intron 0.20 TCGA-CD-8529-01 1 53542984 53542984 A T PODN Missense_Mutation p.H283L 0.07 tolerated(0.67) benign(0.138) TCGA-CD-8529-01 1 70303923 70303923 C T LRRC7 Missense_Mutation p.R164W 0.08 deleterious(0) probably_damaging(0.938) TCGA-CD-8529-01 1 78162930 78162930 A G USP33 3'UTR 0.10 TCGA-CD-8529-01 1 79383697 79383697 G - ELTD1 Frame_Shift_Del p.L502* 0.11 TCGA-CD-8529-01 1 90058373 90058373 A G LRRC8B Missense_Mutation p.Q728R 0.08 tolerated(0.78) probably_damaging(0.932) TCGA-CD-8529-01 20 1145715 1145715 G A PSMF1 Missense_Mutation p.M269I 0.08 deleterious(0.01) probably_damaging(0.997) TCGA-CD-8529-01 20 1352875 1352875 C A FKBP1A Missense_Mutation p.G70C 0.11 deleterious(0) probably_damaging(0.996) TCGA-CD-8529-01 20 16729039 16729039 A T OTOR 5'UTR 0.11 TCGA-CD-8529-01 20 20026089 20026089 C G CRNKL1 Missense_Mutation p.A383P 0.08 deleterious(0) probably_damaging(0.987) TCGA-CD-8529-01 20 21307129 21307129 C G XRN2 Missense_Mutation p.P69A 0.12 deleterious(0.05) benign(0.36) TCGA-CD-8529-01 20 30064443 30064443 T A REM1 Missense_Mutation p.D65E 0.11 tolerated(1) benign(0.007) TCGA-CD-8529-01 20 33657209 33657209 A T TRPC4AP Missense_Mutation p.S102T 0.06 tolerated(0.47) benign(0.139) TCGA-CD-8529-01 20 35060579 35060579 G A DLGAP4 Silent p.K153K 0.07 TCGA-CD-8529-01 20 36147487 36147487 G C BLCAP Silent p.G30G 0.10 TCGA-CD-8529-01 20 40049384 40049384 A C CHD6 Missense_Mutation p.I1964S 0.05 tolerated_low_confidence(0.45) benign(0) TCGA-CD-8529-01 20 40743892 40743892 T C PTPRT Missense_Mutation p.I1016V 0.08 tolerated(0.65) benign(0.035) TCGA-CD-8529-01 20 42935256 42935256 G C FITM2 3'UTR 0.06 TCGA-CD-8529-01 20 43933364 43933364 C T MATN4 Silent p.E49E 0.10 TCGA-CD-8529-01 20 43945644 43945644 G A RBPJL 3'UTR 0.10 TCGA-CD-8529-01 20 44453269 44453269 C T TNNC2 Missense_Mutation p.A22T 0.06 deleterious(0.02) probably_damaging(0.998) TCGA-CD-8529-01 20 44569475 44569475 C T PCIF1 Nonsense_Mutation p.Q139* 0.04 TCGA-CD-8529-01 20 45867752 45867752 G A ZMYND8 Silent p.V805V 0.08 TCGA-CD-8529-01 20 45875236 45875236 G C ZMYND8 Silent p.V600V 0.07 TCGA-CD-8529-01 20 47274717 47274717 T G PREX1 Missense_Mutation p.K644T 0.06 deleterious(0.03) benign(0.243) TCGA-CD-8529-01 20 55033451 55033451 C A CASS4 Missense_Mutation p.P670H 0.07 deleterious(0.03) benign(0) TCGA-CD-8529-01 20 5932800 5932800 C A MCM8 Missense_Mutation p.R47S 0.18 tolerated_low_confidence(0.54) benign(0.008) TCGA-CD-8529-01 20 6088221 6088221 G C FERMT1 Silent p.L269L 0.13 TCGA-CD-8529-01 20 60986024 60986024 C T RBBP8NL Silent p.R635R 0.05 TCGA-CD-8529-01 20 61574443 61574443 C G GID8 Missense_Mutation p.L75V 0.05 deleterious(0.03) benign(0.403) TCGA-CD-8529-01 20 62367201 62367201 G A ZGPAT Missense_Mutation p.R509Q 0.09 tolerated(0.68) benign(0.02) TCGA-CD-8529-01 20 62904884 62904884 C A PCMTD2 Silent p.R339R 0.05 TCGA-CD-8529-01 21 34621112 34621112 G C IFNAR2 Missense_Mutation p.D165H 0.08 tolerated(0.65) benign(0.426) TCGA-CD-8529-01 21 43733598 43733598 C T TFF3 Missense_Mutation p.A90T 0.18 tolerated(0.73) benign(0.001) TCGA-CD-8529-01 21 43795903 43795903 G A TMPRSS3 Silent p.I423I 0.09 TCGA-CD-8529-01 21 46117179 46117179 C A KRTAP10-12 Missense_Mutation p.D21E 0.09 tolerated(0.23) possibly_damaging(0.785) TCGA-CD-8529-01 21 47918594 47918594 A T DIP2A Missense_Mutation p.D168V 0.08 deleterious(0.01) possibly_damaging(0.763) TCGA-CD-8529-01 22 20128487 20128487 G T ZDHHC8 Missense_Mutation p.K282N 0.12 tolerated(0.1) probably_damaging(0.998) TCGA-CD-8529-01 22 22556522 22556522 T C IGLV11-55 Silent p.D112D 0.09 TCGA-CD-8529-01 22 32269191 32269191 G C DEPDC5 Intron 0.11 TCGA-CD-8529-01 22 38889732 38889732 C G DDX17 Missense_Mutation p.R457T 0.08 deleterious(0) probably_damaging(0.986) TCGA-CD-8529-01 22 42972601 42972601 A T SERHL2 3'Flank 0.21 TCGA-CD-8529-01 22 44585079 44585079 G T PARVG Missense_Mutation p.E111D 0.09 tolerated(0.24) benign(0.009) TCGA-CD-8529-01 2 100185340 100185340 G C AFF3 Missense_Mutation p.R1011G 0.06 deleterious(0) possibly_damaging(0.875) TCGA-CD-8529-01 2 107460196 107460196 G T ST6GAL2 Missense_Mutation p.L80M 0.10 possibly_damaging(0.711) TCGA-CD-8529-01 2 109389389 109389389 G C RANBP2 Missense_Mutation p.D2727H 0.09 deleterious(0.03) probably_damaging(0.992) TCGA-CD-8529-01 2 111395577 111395577 A C BUB1 Missense_Mutation p.I1074M 0.08 deleterious(0) probably_damaging(0.997) TCGA-CD-8529-01 2 152320512 152320512 C G RIF1 Missense_Mutation p.T1493S 0.10 tolerated(0.43) benign(0.015) TCGA-CD-8529-01 2 165987898 165987898 C G SCN3A Missense_Mutation p.M807I 0.10 deleterious(0) possibly_damaging(0.73) TCGA-CD-8529-01 2 166201292 166201292 C A SCN2A Missense_Mutation p.H930Q 0.11 deleterious(0) possibly_damaging(0.907) TCGA-CD-8529-01 2 170558070 170558070 A T PHOSPHO2 Missense_Mutation p.M197L 0.11 tolerated(0.19) benign(0.199) TCGA-CD-8529-01 2 172337582 172337582 T G DCAF17 Missense_Mutation p.C507W 0.22 deleterious(0.01) probably_damaging(0.985) TCGA-CD-8529-01 2 172950413 172950413 T A DLX1 Missense_Mutation p.M3K 0.07 deleterious(0) probably_damaging(0.98) TCGA-CD-8529-01 2 178481441 178481441 C G TTC30A Missense_Mutation p.W663C 0.06 deleterious_low_confidence(0) possibly_damaging(0.882) TCGA-CD-8529-01 2 182763743 182763743 A T SSFA2 Missense_Mutation p.N136I 0.17 tolerated(0.1) benign(0.299) TCGA-CD-8529-01 2 190742011 190742011 G A PMS1 Missense_Mutation p.R883H 0.12 deleterious(0) probably_damaging(0.996) TCGA-CD-8529-01 2 192141703 192141703 G A MYO1B Missense_Mutation p.E28K 0.08 deleterious(0.01) probably_damaging(0.998) TCGA-CD-8529-01 2 215866456 215866456 G C ABCA12 Missense_Mutation p.L897V 0.20 tolerated(0.15) benign(0.259) TCGA-CD-8529-01 2 216930156 216930156 G A PECR Silent p.I101I 0.08 TCGA-CD-8529-01 2 218713225 218713225 G A TNS1 Missense_Mutation p.S547F 0.15 tolerated(0.65) benign(0.001) TCGA-CD-8529-01 2 219254705 219254705 T C SLC11A1 Missense_Mutation p.M303T 0.10 tolerated(0.37) possibly_damaging(0.61) TCGA-CD-8529-01 2 219868898 219868898 C G CCDC108 Missense_Mutation p.E1777D 0.09 tolerated(0.34) unknown(0) TCGA-CD-8529-01 2 219892492 219892492 C T CCDC108 Nonsense_Mutation p.W697* 0.06 TCGA-CD-8529-01 2 241066106 241066106 G T MYEOV2 Missense_Mutation p.S211R 0.10 deleterious_low_confidence(0) unknown(0) TCGA-CD-8529-01 2 28002457 28002457 C T MRPL33 3'UTR 0.11 TCGA-CD-8529-01 2 47389473 47389473 G T CALM2 Missense_Mutation p.D79E 0.16 tolerated_low_confidence(0.27) benign(0.002) TCGA-CD-8529-01 2 50318609 50318609 C T NRXN1 Silent p.K1230K 0.08 TCGA-CD-8529-01 2 74659594 74659594 C T RTKN Missense_Mutation p.R104Q 0.06 tolerated(0.07) benign(0.434) TCGA-CD-8529-01 2 89545052 89545052 T A IGKV2-30 5'UTR 0.07 TCGA-CD-8529-01 2 99013226 99013226 T A CNGA3 Silent p.A531A 0.09 TCGA-CD-8529-01 3 108135665 108135665 C A MYH15 Missense_Mutation p.E1334D 0.11 deleterious(0.04) benign(0.075) TCGA-CD-8529-01 3 109050752 109050752 C A DPPA4 Missense_Mutation p.W102L 0.09 deleterious(0) probably_damaging(0.999) TCGA-CD-8529-01 3 109050776 109050776 A C DPPA4 Missense_Mutation p.I94S 0.11 deleterious(0) benign(0.424) TCGA-CD-8529-01 3 11600159 11600159 C G VGLL4 Silent p.T254T 0.07 TCGA-CD-8529-01 3 120315275 120315275 C T NDUFB4 Silent p.Y23Y 0.14 TCGA-CD-8529-01 3 130300458 130300458 C A COL6A6 Missense_Mutation p.Q1201K 0.08 deleterious(0.02) probably_damaging(0.977) TCGA-CD-8529-01 3 133558433 133558433 C T RAB6B Silent p.K106K 0.14 TCGA-CD-8529-01 3 142141456 142141456 C A XRN1 Missense_Mutation p.G312V 0.10 deleterious(0.02) benign(0.084) TCGA-CD-8529-01 3 148899805 148899805 A T CP Silent p.T847T 0.09 TCGA-CD-8529-01 3 150127780 150127780 G C TSC22D2 Missense_Mutation p.D215H 0.07 deleterious(0) possibly_damaging(0.861) TCGA-CD-8529-01 3 15468027 15468027 C G METTL6 5'UTR 0.09 TCGA-CD-8529-01 3 156867644 156867644 A C CCNL1 Missense_Mutation p.F334L 0.12 tolerated(0.09) probably_damaging(0.952) TCGA-CD-8529-01 3 185643391 185643391 C T TRA2B Missense_Mutation p.R65Q 0.06 tolerated_low_confidence(0.12) unknown(0) TCGA-CD-8529-01 3 186334974 186334974 A G AHSG Splice_Site p.X137_splice 0.07 TCGA-CD-8529-01 3 195269755 195269755 G A PPP1R2 Missense_Mutation p.P32S 0.31 tolerated(0.63) benign(0.015) TCGA-CD-8529-01 3 20168959 20168959 G A KAT2B Missense_Mutation p.G556D 0.09 deleterious(0) probably_damaging(0.999) TCGA-CD-8529-01 3 31663715 31663715 G A STT3B Missense_Mutation p.G485E 0.15 tolerated(0.53) benign(0.103) TCGA-CD-8529-01 3 38950566 38950566 G C SCN11A Missense_Mutation p.N407K 0.10 tolerated(0.2) possibly_damaging(0.798) TCGA-CD-8529-01 3 38951693 38951693 C G SCN11A Missense_Mutation p.C322S 0.09 deleterious(0.02) probably_damaging(1) TCGA-CD-8529-01 3 38951694 38951694 A C SCN11A Missense_Mutation p.C322G 0.09 deleterious(0.02) probably_damaging(1) TCGA-CD-8529-01 3 48614351 48614351 C G COL7A1 Missense_Mutation p.G1857A 0.07 unknown(0) TCGA-CD-8529-01 3 48614432 48614432 C G COL7A1 Missense_Mutation p.G1854A 0.09 unknown(0) TCGA-CD-8529-01 3 49700849 49700849 C A BSN Missense_Mutation p.A3753D 0.08 unknown(0) TCGA-CD-8529-01 3 49847796 49847796 C G UBA7 Silent p.P511P 0.07 TCGA-CD-8529-01 3 58279528 58279528 C A ABHD6 3'UTR 0.14 TCGA-CD-8529-01 3 69171378 69171378 G A LMOD3 Nonsense_Mutation p.Q54* 0.10 TCGA-CD-8529-01 3 98073414 98073414 T A OR5K4 Silent p.S239S 0.08 TCGA-CD-8529-01 3 9883651 9883651 C G RPUSD3 Intron 0.10 TCGA-CD-8529-01 4 107956604 107956604 G A DKK2 Nonsense_Mutation p.Q49* 0.10 TCGA-CD-8529-01 4 110663684 110663684 G T CFI Nonsense_Mutation p.Y499* 0.08 TCGA-CD-8529-01 4 110663715 110663715 A G CFI Missense_Mutation p.V489A 0.09 deleterious(0.03) probably_damaging(0.996) TCGA-CD-8529-01 4 111397885 111397885 C T ENPEP Silent p.H105H 0.17 TCGA-CD-8529-01 4 166935594 166935594 G C TLL1 Missense_Mutation p.M308I 0.07 tolerated(0.82) benign(0.004) TCGA-CD-8529-01 4 3190712 3190712 G C HTT Missense_Mutation p.D1754H 0.11 possibly_damaging(0.671) TCGA-CD-8529-01 4 3446393 3446393 G A HGFAC Silent p.L258L 0.19 TCGA-CD-8529-01 4 46307710 46307710 T A GABRA2 Missense_Mutation p.E193V 0.12 deleterious(0) probably_damaging(0.969) TCGA-CD-8529-01 4 46307711 46307711 C A GABRA2 Nonsense_Mutation p.E193* 0.12 TCGA-CD-8529-01 4 533012 533012 G T PIGG Missense_Mutation p.V936F 0.07 deleterious(0) possibly_damaging(0.75) TCGA-CD-8529-01 4 55980320 55980320 G A KDR Silent p.D257D 0.05 TCGA-CD-8529-01 4 5806514 5806514 C T EVC Missense_Mutation p.S836L 0.06 tolerated(0.37) benign(0.003) TCGA-CD-8529-01 4 5830377 5830377 A G CRMP1 Missense_Mutation p.F548L 0.10 deleterious(0.05) possibly_damaging(0.668) TCGA-CD-8529-01 4 6695648 6695648 G A S100P 5'UTR 0.12 TCGA-CD-8529-01 4 6862720 6862720 C G KIAA0232 Missense_Mutation p.S204C 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-CD-8529-01 4 71522076 71522076 G C IGJ Silent p.A150A 0.09 TCGA-CD-8529-01 4 78871018 78871018 G A MRPL1 Missense_Mutation p.R282K 0.09 tolerated(0.8) benign(0.034) TCGA-CD-8529-01 4 84342825 84342825 T A HELQ Missense_Mutation p.E947V 0.07 deleterious(0.01) benign(0.374) TCGA-CD-8529-01 4 90170714 90170714 T G GPRIN3 Missense_Mutation p.D183A 0.06 tolerated(0.31) benign(0.009) TCGA-CD-8529-01 5 101631698 101631698 C T SLCO4C1 Nonsense_Mutation p.W90* 0.11 TCGA-CD-8529-01 5 1076301 1076301 G T SLC12A7 Missense_Mutation p.T600N 0.12 deleterious(0) possibly_damaging(0.521) TCGA-CD-8529-01 5 132088680 132088680 C T CCNI2 3'UTR 0.15 TCGA-CD-8529-01 5 134010858 134010858 C G SEC24A Missense_Mutation p.P368A 0.08 deleterious(0.05) benign(0.025) TCGA-CD-8529-01 5 137600131 137600131 G T GFRA3 Silent p.S66S 0.11 TCGA-CD-8529-01 5 139715520 139715520 G C HBEGF Missense_Mutation p.A164G 0.12 deleterious(0) benign(0.212) TCGA-CD-8529-01 5 140038627 140038627 A G IK Missense_Mutation p.R352G 0.09 deleterious_low_confidence(0.01) possibly_damaging(0.879) TCGA-CD-8529-01 5 140187452 140187452 A C PCDHA4 Missense_Mutation p.Q227P 0.10 deleterious_low_confidence(0) possibly_damaging(0.868) TCGA-CD-8529-01 5 140202534 140202534 G A PCDHA5 Missense_Mutation p.V392I 0.09 tolerated_low_confidence(0.17) benign(0.1) TCGA-CD-8529-01 5 140255711 140255711 T A PCDHA12 Silent p.G218G 0.08 TCGA-CD-8529-01 5 140564258 140564258 C T PCDHB16 Silent p.F708F 0.07 TCGA-CD-8529-01 5 140603844 140603844 C A PCDHB14 Missense_Mutation p.P256H 0.07 deleterious_low_confidence(0.01) probably_damaging(0.987) TCGA-CD-8529-01 5 140627303 140627303 G A PCDHB15 Silent p.A719A 0.06 TCGA-CD-8529-01 5 140763604 140763604 G A PCDHGA7 Missense_Mutation p.G380S 0.16 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-CD-8529-01 5 140772682 140772682 G A PCDHGA8 Missense_Mutation p.R101Q 0.10 tolerated_low_confidence(0.21) benign(0.03) TCGA-CD-8529-01 5 140810919 140810919 G A PCDHGA12 Missense_Mutation p.R198H 0.13 tolerated_low_confidence(0.18) benign(0.114) TCGA-CD-8529-01 5 140864787 140864787 C A PCDHGC4 Missense_Mutation p.T16N 0.16 tolerated(0.07) benign(0.029) TCGA-CD-8529-01 5 141367370 141367370 A T RNF14 3'UTR 0.10 TCGA-CD-8529-01 5 148630060 148630060 C T ABLIM3 Silent p.L594L 0.07 TCGA-CD-8529-01 5 150322192 150322192 T C ZNF300P1 RNA 0.10 TCGA-CD-8529-01 5 151771908 151771908 G C NMUR2 Missense_Mutation p.I364M 0.05 tolerated(0.05) benign(0.073) TCGA-CD-8529-01 5 153406876 153406876 C A FAM114A2 Nonsense_Mutation p.E217* 0.14 TCGA-CD-8529-01 5 153760070 153760070 G A GALNT10 Missense_Mutation p.D273N 0.10 tolerated(1) benign(0.005) TCGA-CD-8529-01 5 174868997 174868997 G A DRD1 Missense_Mutation p.A369V 0.07 tolerated(0.33) benign(0) TCGA-CD-8529-01 5 24537494 24537494 A T CDH10 Missense_Mutation p.V174D 0.09 tolerated(0.53) benign(0.001) TCGA-CD-8529-01 5 35955903 35955903 C T UGT3A1 Missense_Mutation p.R380H 0.07 tolerated(0.43) benign(0.001) TCGA-CD-8529-01 5 38407142 38407142 T G EGFLAM Missense_Mutation p.C347W 0.13 deleterious(0) probably_damaging(1) TCGA-CD-8529-01 5 41161823 41161823 T C C6 Missense_Mutation p.K477R 0.06 tolerated(0.12) probably_damaging(0.97) TCGA-CD-8529-01 5 55471985 55471985 G A ANKRD55 Silent p.T102T 0.08 TCGA-CD-8529-01 5 61690434 61690434 C T DIMT1 Silent p.R149R 0.17 TCGA-CD-8529-01 5 79616240 79616260 TTAACAATCTCTTAAAAGAAA - SPZ1 In_Frame_Del p.N70_I76del 0.21 TCGA-CD-8529-01 6 10796386 10796386 G C MAK Missense_Mutation p.Q330E 0.10 tolerated(0.14) benign(0.003) TCGA-CD-8529-01 6 10898264 10898266 AAC - SYCP2L In_Frame_Del p.T121del 0.09 TCGA-CD-8529-01 6 110746263 110746263 A C SLC22A16 Missense_Mutation p.L516R 0.10 deleterious(0) probably_damaging(0.938) TCGA-CD-8529-01 6 112670980 112670980 C G RFPL4B Missense_Mutation p.L24V 0.10 deleterious(0.04) possibly_damaging(0.794) TCGA-CD-8529-01 6 117861962 117861962 T - DCBLD1 Frame_Shift_Del p.C412Afs*43 0.24 TCGA-CD-8529-01 6 125232012 125232012 A G RP11-510H23.1 RNA 0.09 TCGA-CD-8529-01 6 131929185 131929185 G C MED23 Silent p.G368G 0.08 TCGA-CD-8529-01 6 137524711 137524711 C G IFNGR1 Missense_Mutation p.V220L 0.07 tolerated(0.47) benign(0.046) TCGA-CD-8529-01 6 146351337 146351337 T C GRM1 Silent p.S228S 0.11 TCGA-CD-8529-01 6 158330999 158330999 C T SNX9 Silent p.L297L 0.17 TCGA-CD-8529-01 6 165715612 165715612 T C C6orf118 Missense_Mutation p.N67D 0.14 tolerated(0.1) possibly_damaging(0.849) TCGA-CD-8529-01 6 18222269 18222269 T G KDM1B 3'UTR 0.06 TCGA-CD-8529-01 6 2623613 2623613 C T C6orf195 3'UTR 0.21 TCGA-CD-8529-01 6 2678542 2678542 A C MYLK4 Missense_Mutation p.C318G 0.19 tolerated(0.11) benign(0.308) TCGA-CD-8529-01 6 28056762 28056797 ATCTTTCAAGAGCCCAAAACTTGCTAAACATGCAGC - ZNF165 In_Frame_Del p.S325_A336del 0.15 TCGA-CD-8529-01 6 28547186 28547186 C A SCAND3 Missense_Mutation p.G144V 0.06 deleterious_low_confidence(0) benign(0.004) TCGA-CD-8529-01 6 2890570 2890570 C G SERPINB9 Missense_Mutation p.V320L 0.05 deleterious(0.05) benign(0.098) TCGA-CD-8529-01 6 29643777 29643777 T A ZFP57 Silent p.L61L 0.09 TCGA-CD-8529-01 6 30615107 30615107 G A C6orf136 Silent p.R33R 0.14 TCGA-CD-8529-01 6 30884912 30884912 G C VARS2 Missense_Mutation p.V292L 0.07 deleterious(0.03) benign(0.365) TCGA-CD-8529-01 6 31777778 31777778 G T HSPA1L 3'UTR 0.08 TCGA-CD-8529-01 6 31827959 31827959 C T NEU1 Missense_Mutation p.R294H 0.06 tolerated(0.09) benign(0.159) TCGA-CD-8529-01 6 32188548 32188548 G T NOTCH4 Missense_Mutation p.P303T 0.07 deleterious(0) probably_damaging(1) TCGA-CD-8529-01 6 35927520 35927520 A C SLC26A8 Missense_Mutation p.Y568D 0.10 tolerated(0.85) benign(0.02) TCGA-CD-8529-01 6 38905858 38905858 T C DNAH8 Missense_Mutation p.I3674T 0.07 probably_damaging(0.999) TCGA-CD-8529-01 6 39284171 39284171 C A KCNK16 Intron 0.27 TCGA-CD-8529-01 6 41126729 41126729 C T TREM2 Silent p.K186K 0.10 TCGA-CD-8529-01 6 42689828 42689828 C T PRPH2 Missense_Mutation p.C82Y 0.07 deleterious(0) probably_damaging(0.993) TCGA-CD-8529-01 6 42797574 42797574 G C GLTSCR1L Missense_Mutation p.L501F 0.09 tolerated(0.07) probably_damaging(0.999) TCGA-CD-8529-01 6 43173834 43173834 G A CUL9 Missense_Mutation p.R1628H 0.11 tolerated(0.06) probably_damaging(1) TCGA-CD-8529-01 6 43223579 43223579 C G TTBK1 Silent p.T282T 0.12 TCGA-CD-8529-01 6 55364066 55364066 C T HMGCLL1 Missense_Mutation p.E222K 0.10 deleterious(0) possibly_damaging(0.604) TCGA-CD-8529-01 6 71298420 71298420 A G C6orf57 Missense_Mutation p.D107G 0.09 deleterious(0) probably_damaging(1) TCGA-CD-8529-01 6 75804879 75804911 GGGGAGCCTGGGCTTCCCTACAACACATGGAAA - COL12A1 Splice_Site p.X2860_splice 0.11 TCGA-CD-8529-01 6 80383441 80383441 C A SH3BGRL2 Missense_Mutation p.N52K 0.10 deleterious(0.01) possibly_damaging(0.611) TCGA-CD-8529-01 6 80629160 80629160 G A ELOVL4 Nonsense_Mutation p.R216* 0.07 TCGA-CD-8529-01 6 83863234 83863234 T G DOPEY1 Missense_Mutation p.L2045W 0.09 deleterious(0) possibly_damaging(0.757) TCGA-CD-8529-01 7 100552463 100552463 C G MUC3A Missense_Mutation p.T405S 0.05 tolerated(0.41) benign(0.064) TCGA-CD-8529-01 7 100771774 100771774 C G SERPINE1 Missense_Mutation p.L34V 0.21 deleterious(0.01) benign(0.319) TCGA-CD-8529-01 7 100859523 100859523 C T PLOD3 Silent p.E141E 0.23 TCGA-CD-8529-01 7 1028043 1028043 C T CYP2W1 Missense_Mutation p.P425L 0.10 deleterious(0) probably_damaging(0.992) TCGA-CD-8529-01 7 107572669 107572669 C A LAMB1 Missense_Mutation p.D1448Y 0.13 deleterious(0) probably_damaging(0.982) TCGA-CD-8529-01 7 108204790 108204790 T G THAP5 Missense_Mutation p.I345L 0.08 deleterious(0.01) benign(0.123) TCGA-CD-8529-01 7 1097511 1097511 C A GPR146 Silent p.T120T 0.09 TCGA-CD-8529-01 7 119914633 119914633 C T KCND2 5'UTR 0.06 TCGA-CD-8529-01 7 12680057 12680057 C G SCIN Nonsense_Mutation p.S499* 0.08 TCGA-CD-8529-01 7 127255565 127255565 G T PAX4 Missense_Mutation p.L4I 0.07 deleterious(0) probably_damaging(0.997) TCGA-CD-8529-01 7 151875009 151875009 A G KMT2C Missense_Mutation p.V2510A 0.10 benign(0.007) TCGA-CD-8529-01 7 151945673 151945673 C T KMT2C Missense_Mutation p.E616K 0.16 benign(0.15) TCGA-CD-8529-01 7 27825103 27825103 T C TAX1BP1 Missense_Mutation p.Y283H 0.14 deleterious(0.03) possibly_damaging(0.464) TCGA-CD-8529-01 7 30490931 30490931 T C NOD1 Missense_Mutation p.H701R 0.09 deleterious(0) probably_damaging(0.996) TCGA-CD-8529-01 7 38534085 38534085 T A AMPH Missense_Mutation p.E83V 0.12 deleterious(0) probably_damaging(0.964) TCGA-CD-8529-01 7 69364275 69364275 G T AUTS2 Missense_Mutation p.D105Y 0.13 deleterious(0) possibly_damaging(0.873) TCGA-CD-8529-01 7 81381461 81381461 G T HGF Silent p.V200V 0.06 TCGA-CD-8529-01 7 87006686 87006686 G A CROT Missense_Mutation p.G328R 0.08 deleterious(0) probably_damaging(0.999) TCGA-CD-8529-01 7 8790784 8790784 G C NXPH1 Missense_Mutation p.E67D 0.09 tolerated(0.36) benign(0.438) TCGA-CD-8529-01 7 99123675 99123675 C G ZKSCAN5 Missense_Mutation p.Q338E 0.18 deleterious(0.02) benign(0.02) TCGA-CD-8529-01 8 100026063 100026063 G C VPS13B Missense_Mutation p.R16P 0.06 deleterious(0) possibly_damaging(0.767) TCGA-CD-8529-01 8 101725403 101725403 G A PABPC1 Missense_Mutation p.A217V 0.10 tolerated(0.72) benign(0.001) TCGA-CD-8529-01 8 104930682 104930682 A T RIMS2 Missense_Mutation p.I684L 0.14 deleterious_low_confidence(0.03) benign(0.034) TCGA-CD-8529-01 8 107781917 107781917 A G ABRA Missense_Mutation p.S168P 0.09 deleterious(0.01) possibly_damaging(0.888) TCGA-CD-8529-01 8 110437393 110437393 G A PKHD1L1 Missense_Mutation p.R926K 0.08 tolerated(0.07) probably_damaging(0.91) TCGA-CD-8529-01 8 110509186 110509186 G T PKHD1L1 Missense_Mutation p.A3456S 0.09 deleterious(0.02) possibly_damaging(0.774) TCGA-CD-8529-01 8 11142408 11142408 C T MTMR9 Missense_Mutation p.A4V 0.08 tolerated(0.22) benign(0.041) TCGA-CD-8529-01 8 113259259 113259259 A T CSMD3 Silent p.P3404P 0.09 TCGA-CD-8529-01 8 113871387 113871387 A C CSMD3 Missense_Mutation p.V581G 0.07 tolerated(0.12) benign(0.099) TCGA-CD-8529-01 8 11703288 11703288 T - CTSB Frame_Shift_Del p.Q268Hfs*7 0.10 TCGA-CD-8529-01 8 118175718 118175718 T A SLC30A8 Missense_Mutation p.L260M 0.06 deleterious(0.01) probably_damaging(0.987) TCGA-CD-8529-01 8 125029939 125029939 C T FER1L6 Missense_Mutation p.T665M 0.10 tolerated(0.1) benign(0.063) TCGA-CD-8529-01 8 133141890 133141890 C G KCNQ3 Silent p.T746T 0.09 TCGA-CD-8529-01 8 134203323 134203323 T A WISP1 5'UTR 0.27 TCGA-CD-8529-01 8 26227693 26227693 G C PPP2R2A Missense_Mutation p.D380H 0.07 deleterious(0) probably_damaging(0.956) TCGA-CD-8529-01 8 26628134 26628134 T G ADRA1A Silent p.V311V 0.12 TCGA-CD-8529-01 8 37686799 37686799 T C GPR124 Missense_Mutation p.I144T 0.06 deleterious(0) probably_damaging(0.978) TCGA-CD-8529-01 8 48852143 48852143 T C PRKDC Missense_Mutation p.I361V 0.08 benign(0.16) TCGA-CD-8529-01 8 62479816 62479816 G A ASPH Missense_Mutation p.T404I 0.09 deleterious(0) probably_damaging(0.92) TCGA-CD-8529-01 8 67356836 67356836 A G ADHFE1 Missense_Mutation p.K69R 0.21 tolerated(0.31) benign(0.008) TCGA-CD-8529-01 8 67361172 67361172 G A ADHFE1 Missense_Mutation p.R234Q 0.17 tolerated(0.39) benign(0.016) TCGA-CD-8529-01 8 94934857 94934857 C T PDP1 Silent p.L215L 0.06 TCGA-CD-8529-01 8 95522055 95522055 T C KIAA1429 Missense_Mutation p.N1247S 0.06 tolerated(1) benign(0.007) TCGA-CD-8529-01 9 104335715 104335715 C G GRIN3A Missense_Mutation p.S1030T 0.05 tolerated(0.59) benign(0.002) TCGA-CD-8529-01 9 108337325 108337325 C G FKTN Missense_Mutation p.I4M 0.07 tolerated_low_confidence(0.12) possibly_damaging(0.581) TCGA-CD-8529-01 9 108484874 108484874 G C TMEM38B Missense_Mutation p.E172Q 0.08 deleterious(0.03) benign(0.367) TCGA-CD-8529-01 9 113703796 113703796 C T LPAR1 Missense_Mutation p.R233H 0.19 deleterious(0) probably_damaging(0.926) TCGA-CD-8529-01 9 115759828 115759828 C G ZNF883 RNA 0.09 TCGA-CD-8529-01 9 117266496 117266496 G C DFNB31 Missense_Mutation p.L196V 0.05 deleterious(0.01) probably_damaging(0.91) TCGA-CD-8529-01 9 125423975 125423975 C G OR1L1 5'Flank 0.12 TCGA-CD-8529-01 9 125863928 125863928 T A RABGAP1 Silent p.V991V 0.13 TCGA-CD-8529-01 9 131394978 131394978 G A SPTAN1 Missense_Mutation p.D2381N 0.10 tolerated(0.19) benign(0.024) TCGA-CD-8529-01 9 131708695 131708695 G A DOLK Silent p.T296T 0.09 TCGA-CD-8529-01 9 136910450 136910450 C A BRD3 Missense_Mutation p.D394Y 0.14 deleterious(0) probably_damaging(0.993) TCGA-CD-8529-01 9 14859323 14859323 A C FREM1 Nonsense_Mutation p.Y163* 0.07 TCGA-CD-8529-01 9 34972446 34972446 G A KIAA1045 Missense_Mutation p.R161H 0.08 tolerated(0.12) probably_damaging(0.999) TCGA-CD-8529-01 9 35612891 35612891 G T CD72 Missense_Mutation p.T263N 0.08 deleterious(0) benign(0.216) TCGA-CD-8529-01 9 35704345 35704345 T A TLN1 Missense_Mutation p.T2011S 0.11 tolerated(0.9) benign(0.014) TCGA-CD-8529-01 9 35813615 35813615 G A HINT2 Intron 0.07 TCGA-CD-8529-01 9 5164104 5164104 G T INSL6 Missense_Mutation p.R151S 0.08 tolerated(0.88) benign(0) TCGA-CD-8529-01 9 712605 712605 C T KANK1 Silent p.L613L 0.13 TCGA-CD-8529-01 9 91628480 91628480 T C SHC3 Missense_Mutation p.K556R 0.08 deleterious(0.02) benign(0.018) TCGA-CD-8529-01 9 93983218 93983218 A G AUH Missense_Mutation p.F238L 0.08 deleterious(0.02) probably_damaging(0.952) TCGA-CD-8529-01 9 95258657 95258657 G C ECM2 Nonsense_Mutation p.Y680* 0.08 TCGA-CD-8529-01 9 96312912 96312912 C G FAM120A Missense_Mutation p.A738G 0.13 deleterious(0) probably_damaging(0.982) TCGA-CD-8529-01 X 130678949 130678949 G T OR13H1 Missense_Mutation p.R301M 0.12 deleterious(0) possibly_damaging(0.77) TCGA-CD-8529-01 X 1460718 1460718 G C IL3RA Missense_Mutation p.K20N 0.09 tolerated(0.49) benign(0) TCGA-CD-8529-01 X 152014936 152014936 C A NSDHL Missense_Mutation p.P23H 0.41 deleterious_low_confidence(0) benign(0.401) TCGA-CD-8529-01 X 153220024 153220024 C T HCFC1 Missense_Mutation p.E1276K 0.17 deleterious_low_confidence(0.04) probably_damaging(0.965) TCGA-CD-8529-01 X 30686201 30686201 T G GK Silent p.L75L 0.19 TCGA-CD-8529-01 X 41333460 41333460 G A NYX Missense_Mutation p.G252S 0.25 deleterious(0.01) probably_damaging(1) TCGA-CD-8529-01 X 50146111 50146111 C G DGKK RNA 0.21 TCGA-CD-8529-01 X 71425290 71425290 G A ERCC6L Silent p.D1109D 0.31 TCGA-CD-8529-01 X 77267114 77267114 T C ATP7A Silent p.I705I 0.14 TCGA-CD-8530-01 10 111860580 111860580 C T ADD3 Nonsense_Mutation p.R57* 0.20 TCGA-CD-8530-01 10 112350788 112350788 G A SMC3 Silent p.T570T 0.18 TCGA-CD-8530-01 10 13264037 13264037 T C UCMA 3'UTR 0.33 TCGA-CD-8530-01 10 99329965 99329965 G A UBTD1 Silent p.P123P 0.05 TCGA-CD-8530-01 11 31086577 31086577 A C DCDC1 Missense_Mutation p.L808V 0.21 tolerated_low_confidence(0.23) benign(0.162) TCGA-CD-8530-01 11 5275627 5275627 A C HBG2 Silent p.T70T 0.08 TCGA-CD-8530-01 11 55065534 55065534 T G TRIM51HP RNA 0.23 TCGA-CD-8530-01 11 55135904 55135904 T G OR4A15 Missense_Mutation p.L182R 0.15 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-CD-8530-01 11 55541046 55541046 T G OR5D13 Missense_Mutation p.L45V 0.18 tolerated(0.06) benign(0.144) TCGA-CD-8530-01 11 55703785 55703785 A G OR5I1 Missense_Mutation p.L31P 0.23 deleterious(0) possibly_damaging(0.879) TCGA-CD-8530-01 11 5862875 5862875 C G OR52E6 Missense_Mutation p.G85R 0.05 deleterious(0) possibly_damaging(0.717) TCGA-CD-8530-01 11 62384793 62384793 C T B3GAT3 Missense_Mutation p.R95Q 0.14 deleterious(0) probably_damaging(0.995) TCGA-CD-8530-01 11 6942565 6942565 T C OR2D3 Silent p.Y111Y 0.11 TCGA-CD-8530-01 12 11545866 11545866 A G PRB2 Silent p.P382P 0.17 TCGA-CD-8530-01 12 122618125 122618125 C T MLXIP Silent p.P441P 0.73 TCGA-CD-8530-01 12 2693707 2693707 A G CACNA1C Missense_Mutation p.N755D 0.21 deleterious(0) probably_damaging(0.999) TCGA-CD-8530-01 12 70963671 70963671 C A PTPRB Missense_Mutation p.D1140Y 0.47 deleterious(0) possibly_damaging(0.891) TCGA-CD-8530-01 12 72025967 72025967 C A ZFC3H1 Nonsense_Mutation p.E1049* 0.07 TCGA-CD-8530-01 13 101755585 101755585 G C NALCN Missense_Mutation p.L999V 0.07 deleterious(0) probably_damaging(1) TCGA-CD-8530-01 13 25887119 25887119 A G NUPL1 Missense_Mutation p.T129A 0.08 tolerated(0.14) benign(0.009) TCGA-CD-8530-01 13 61103242 61103242 C G TDRD3 Missense_Mutation p.S628C 0.28 deleterious(0) probably_damaging(0.959) TCGA-CD-8530-01 14 33292089 33292089 A C AKAP6 Missense_Mutation p.E1690D 0.11 deleterious(0) probably_damaging(0.99) TCGA-CD-8530-01 14 58711616 58711616 C G PSMA3 5'UTR 0.20 TCGA-CD-8530-01 14 61113012 61113012 A C SIX1 Missense_Mutation p.L282V 0.11 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-CD-8530-01 14 74042288 74042288 A G ACOT2 3'UTR 0.17 TCGA-CD-8530-01 14 94044282 94044282 G A UNC79 Missense_Mutation p.R592H 0.22 tolerated(0.07) benign(0.003) TCGA-CD-8530-01 14 94069764 94069764 C T UNC79 Nonsense_Mutation p.R1075* 0.15 TCGA-CD-8530-01 15 20488824 20488824 T G CHEK2P2 RNA 0.06 TCGA-CD-8530-01 15 25485003 25485003 T G SNORD115-38 RNA 0.26 TCGA-CD-8530-01 15 69740196 69740196 C A KIF23 3'UTR 0.29 TCGA-CD-8530-01 16 66974398 66974398 C T CES2 Missense_Mutation p.R270C 0.08 deleterious(0) benign(0.239) TCGA-CD-8530-01 16 68011862 68011862 G A DPEP3 Silent p.S270S 0.18 TCGA-CD-8530-01 16 74487138 74487138 C A GLG1 Missense_Mutation p.C1156F 0.41 deleterious(0.03) benign(0.263) TCGA-CD-8530-01 17 7579355 7579355 A T TP53 Missense_Mutation p.L111Q 0.38 deleterious(0) probably_damaging(0.998) TCGA-CD-8530-01 17 7699901 7699901 C T DNAH2 Silent p.T2598T 0.14 TCGA-CD-8530-01 19 18893969 18893969 C T COMP Missense_Mutation p.D708N 0.24 deleterious(0) probably_damaging(0.998) TCGA-CD-8530-01 19 23329342 23329342 A C ZNF730 Missense_Mutation p.K499T 0.22 deleterious(0.01) benign(0.03) TCGA-CD-8530-01 19 23329369 23329369 A C ZNF730 3'UTR 0.18 TCGA-CD-8530-01 19 36832099 36832099 C T ZFP14 Missense_Mutation p.R210K 0.20 tolerated(0.19) probably_damaging(0.996) TCGA-CD-8530-01 19 43268240 43268240 A G PSG8 Silent p.G86G 0.28 TCGA-CD-8530-01 19 43522985 43522985 C G PSG11 Missense_Mutation p.E216Q 0.27 tolerated(0.05) probably_damaging(0.931) TCGA-CD-8530-01 19 48598787 48598787 C T PLA2G4C Missense_Mutation p.G225R 0.22 deleterious(0) probably_damaging(1) TCGA-CD-8530-01 19 58265398 58265398 T G ZNF776 Silent p.S300S 0.23 TCGA-CD-8530-01 19 58992030 58992030 C T ZNF446 Silent p.R430R 0.08 TCGA-CD-8530-01 1 12414216 12414216 C T VPS13D Missense_Mutation p.T3206M 0.10 benign(0.157) TCGA-CD-8530-01 1 12907860 12907860 C T HNRNPCL1 Missense_Mutation p.A95T 0.06 tolerated(0.34) benign(0.04) TCGA-CD-8530-01 1 158592943 158592943 T C SPTA1 Missense_Mutation p.R1984G 0.04 tolerated(1) possibly_damaging(0.527) TCGA-CD-8530-01 1 184859256 184859269 AAATGCCTGTCAGA - FAM129A Frame_Shift_Del p.S136Pfs*8 0.09 TCGA-CD-8530-01 1 237494273 237494273 A T RYR2 Missense_Mutation p.K88N 0.37 benign(0.007) TCGA-CD-8530-01 1 52901122 52901122 C T ZCCHC11 Missense_Mutation p.R1393H 0.18 deleterious(0) possibly_damaging(0.845) TCGA-CD-8530-01 20 23473638 23473638 G A CST8 Missense_Mutation p.R92H 0.11 deleterious(0) probably_damaging(1) TCGA-CD-8530-01 20 23729745 23729745 A C CST1 Missense_Mutation p.F84V 0.10 deleterious(0.04) probably_damaging(0.991) TCGA-CD-8530-01 20 57268953 57268953 C T NPEPL1 Missense_Mutation p.P104L 0.20 tolerated(0.7) benign(0.001) TCGA-CD-8530-01 21 34971477 34971477 C T CRYZL1 Missense_Mutation p.D219N 0.12 deleterious(0.05) probably_damaging(0.993) TCGA-CD-8530-01 21 34971482 34971482 C A CRYZL1 Missense_Mutation p.G217V 0.10 deleterious(0) probably_damaging(1) TCGA-CD-8530-01 21 34971513 34971513 C T CRYZL1 Missense_Mutation p.E207K 0.11 tolerated(0.28) possibly_damaging(0.498) TCGA-CD-8530-01 21 43546460 43546460 G A UMODL1 Missense_Mutation p.M1179I 0.32 tolerated(0.2) benign(0.01) TCGA-CD-8530-01 21 43546475 43546475 G A UMODL1 Silent p.V1184V 0.31 TCGA-CD-8530-01 21 43546526 43546526 G A UMODL1 Silent p.L1201L 0.26 TCGA-CD-8530-01 22 36055314 36055314 G A APOL6 Missense_Mutation p.V235M 0.15 tolerated(0.47) benign(0.008) TCGA-CD-8530-01 22 47103812 47103812 C A CERK Missense_Mutation p.A215S 0.08 tolerated(0.32) benign(0.13) TCGA-CD-8530-01 2 125530443 125530443 T G CNTNAP5 Silent p.P866P 0.23 TCGA-CD-8530-01 2 128015089 128015089 G A ERCC3 3'UTR 0.08 TCGA-CD-8530-01 2 141641574 141641574 T A LRP1B Missense_Mutation p.E1327D 0.07 benign(0.002) TCGA-CD-8530-01 2 179428698 179428698 A C TTN Missense_Mutation p.C27387W 0.17 TCGA-CD-8530-01 2 198949824 198949824 C A PLCL1 Missense_Mutation p.P528Q 0.14 deleterious(0) probably_damaging(0.997) TCGA-CD-8530-01 2 200820176 200820176 G C TYW5 Silent p.L6L 0.20 TCGA-CD-8530-01 2 230456508 230456508 C G DNER Missense_Mutation p.E125Q 0.09 tolerated(0.17) possibly_damaging(0.751) TCGA-CD-8530-01 2 242178175 242178175 T C HDLBP Missense_Mutation p.I880V 0.23 tolerated(0.08) possibly_damaging(0.478) TCGA-CD-8530-01 2 39075508 39075508 C T DHX57 Silent p.S689S 0.32 TCGA-CD-8530-01 2 55254410 55254410 C G RTN4 Missense_Mutation p.E275D 0.27 deleterious(0.02) benign(0.055) TCGA-CD-8530-01 2 55254424 55254424 C G RTN4 Missense_Mutation p.E271Q 0.21 tolerated(0.11) benign(0.257) TCGA-CD-8530-01 3 17051550 17051550 G T PLCL2 Missense_Mutation p.V112F 0.11 deleterious(0.04) possibly_damaging(0.774) TCGA-CD-8530-01 3 45746628 45746628 C T SACM1L Silent p.V44V 0.33 TCGA-CD-8530-01 3 48699919 48699919 G A CELSR3 Missense_Mutation p.T50M 0.20 tolerated_low_confidence(0.06) benign(0.003) TCGA-CD-8530-01 3 51112789 51112789 A C DOCK3 Missense_Mutation p.H156P 0.20 tolerated(0.06) probably_damaging(0.949) TCGA-CD-8530-01 4 183603102 183603102 C T TENM3 Missense_Mutation p.T657M 0.21 deleterious(0) probably_damaging(0.93) TCGA-CD-8530-01 4 4301776 4301776 G T ZBTB49 Missense_Mutation p.C35F 0.27 deleterious(0) probably_damaging(0.999) TCGA-CD-8530-01 4 65175598 65175598 G T TECRL Silent p.T201T 0.16 TCGA-CD-8530-01 4 88902928 88902928 A C SPP1 Missense_Mutation p.K173T 0.16 tolerated(0.21) probably_damaging(0.932) TCGA-CD-8530-01 5 100147444 100147444 C T ST8SIA4 3'UTR 0.29 TCGA-CD-8530-01 5 137534434 137534437 TCTT - CDC23 Frame_Shift_Del p.K230Sfs*13 0.12 TCGA-CD-8530-01 5 140731511 140731511 G A PCDHGB1 Missense_Mutation p.A562T 0.28 tolerated(0.23) benign(0.093) TCGA-CD-8530-01 5 140741192 140741192 A C PCDHGB2 Missense_Mutation p.K497T 0.19 deleterious(0.04) benign(0.002) TCGA-CD-8530-01 5 158250238 158250238 G A EBF1 Missense_Mutation p.R242W 0.31 deleterious(0) probably_damaging(0.999) TCGA-CD-8530-01 5 161112937 161112937 C T GABRA6 5'UTR 0.14 TCGA-CD-8530-01 5 176942189 176942189 G A DDX41 Silent p.T214T 0.17 TCGA-CD-8530-01 5 177987741 177987741 G A COL23A1 Silent p.D101D 0.29 TCGA-CD-8530-01 6 125233657 125233657 G A RP11-510H23.1 RNA 0.19 TCGA-CD-8530-01 6 134492172 134492172 T C SGK1 Missense_Mutation p.K438E 0.24 tolerated(0.34) benign(0.18) TCGA-CD-8530-01 6 160482581 160482581 G C IGF2R Missense_Mutation p.R1103S 0.20 tolerated(0.42) benign(0.044) TCGA-CD-8530-01 6 22294767 22294767 G A PRL Silent p.S25S 0.40 TCGA-CD-8530-01 6 30955037 30955037 A T MUC21 Missense_Mutation p.N362I 0.06 deleterious(0) unknown(0) TCGA-CD-8530-01 6 75797464 75797464 C T COL12A1 Splice_Site p.X3004_splice 0.18 TCGA-CD-8530-01 6 90605670 90605670 C G GJA10 Missense_Mutation p.L495V 0.27 tolerated_low_confidence(1) benign(0) TCGA-CD-8530-01 7 100485890 100485890 G A SRRT Missense_Mutation p.R814H 0.08 tolerated(0.45) benign(0.002) TCGA-CD-8530-01 7 102065546 102065546 C A PRKRIP1 Silent p.T181T 0.32 TCGA-CD-8530-01 7 104377350 104377350 A G LHFPL3 Missense_Mutation p.E225G 0.22 deleterious(0.01) possibly_damaging(0.779) TCGA-CD-8530-01 7 138314822 138314822 G A SVOPL Missense_Mutation p.R279W 0.10 tolerated(0.19) probably_damaging(0.983) TCGA-CD-8530-01 7 2041726 2041726 C T MAD1L1 Missense_Mutation p.G464R 0.05 deleterious(0) probably_damaging(0.925) TCGA-CD-8530-01 7 50514332 50514332 T C FIGNL1 Silent p.T218T 0.13 TCGA-CD-8530-01 7 62751947 62751947 T G ZNF733P RNA 0.12 TCGA-CD-8530-01 7 82545485 82545485 T C PCLO Silent p.Q3939Q 0.20 TCGA-CD-8530-01 8 104898096 104898096 T C RIMS2 Silent p.S423S 0.09 TCGA-CD-8530-01 8 143928146 143928146 C T GML 3'UTR 0.44 TCGA-CD-8530-01 8 42587391 42587391 C G CHRNB3 Missense_Mutation p.T314S 0.30 deleterious(0) probably_damaging(0.999) TCGA-CD-8530-01 8 73480086 73480086 C A KCNB2 Silent p.I39I 0.08 TCGA-CD-8530-01 9 113238531 113238531 T G SVEP1 Missense_Mutation p.K851T 0.15 possibly_damaging(0.881) TCGA-CD-8530-01 9 93640013 93640013 A T SYK Missense_Mutation p.M448L 0.17 tolerated(0.2) probably_damaging(0.99) TCGA-CD-8530-01 9 98220421 98220421 G A PTCH1 Silent p.P1014P 0.10 TCGA-CD-8530-01 X 100809059 100809059 T G ARMCX1 Missense_Mutation p.D382E 0.25 tolerated(1) probably_damaging(0.994) TCGA-CD-8530-01 X 100880290 100880290 A G ARMCX3 Silent p.K107K 0.18 TCGA-CD-8530-01 X 112021710 112021710 C A AMOT 3'UTR 0.40 TCGA-CD-8530-01 X 152226073 152226073 C T PNMA3 Missense_Mutation p.R221W 0.48 tolerated(0.12) probably_damaging(0.972) TCGA-CD-8530-01 X 154113540 154113540 C T H2AFB1 Silent p.G72G 0.32 TCGA-CD-8530-01 X 73961323 73961323 A C KIAA2022 Silent p.T1023T 0.42 TCGA-CD-8530-01 X 74494178 74494178 G T UPRT Missense_Mutation p.R30L 0.29 tolerated_low_confidence(0.07) benign(0.005) TCGA-CD-8531-01 10 104140096 104140096 C T GBF1 Missense_Mutation p.H1656Y 0.37 deleterious(0.01) probably_damaging(0.922) TCGA-CD-8531-01 10 24832186 24832186 C T KIAA1217 Silent p.S1329S 0.46 TCGA-CD-8531-01 10 26506781 26506781 C T GAD2 Silent p.Y49Y 0.32 TCGA-CD-8531-01 10 27538369 27538369 T G RP11-85G18.6 Intron 0.26 TCGA-CD-8531-01 10 27538372 27538372 A G RP11-85G18.6 Intron 0.25 TCGA-CD-8531-01 10 27538373 27538373 T A RP11-85G18.6 Intron 0.25 TCGA-CD-8531-01 10 44873202 44873202 C T CXCL12 Missense_Mutation p.V140M 0.33 deleterious_low_confidence(0) benign(0) TCGA-CD-8531-01 10 5008166 5008166 A G AKR1C1 Missense_Mutation p.I49V 0.36 deleterious(0.03) benign(0.03) TCGA-CD-8531-01 10 50950980 50950980 G A OGDHL Missense_Mutation p.R636W 0.41 deleterious(0.01) benign(0.071) TCGA-CD-8531-01 10 55571328 55571328 A C PCDH15 Missense_Mutation p.I1475M 0.36 deleterious_low_confidence(0.03) benign(0.02) TCGA-CD-8531-01 10 75557209 75557209 C T ZSWIM8 Nonsense_Mutation p.R1170* 0.34 TCGA-CD-8531-01 10 76928353 76928353 C T SAMD8 Silent p.R243R 0.37 TCGA-CD-8531-01 10 89624242 89624242 A G PTEN Missense_Mutation p.K6E 0.42 deleterious(0) possibly_damaging(0.493) TCGA-CD-8531-01 10 89624286 89624286 A G PTEN Silent p.G20G 0.35 TCGA-CD-8531-01 10 89624297 89624297 A T PTEN Missense_Mutation p.D24V 0.35 deleterious(0.01) probably_damaging(0.972) TCGA-CD-8531-01 10 90773891 90773892 - T FAS Frame_Shift_Ins p.K231Nfs*16 0.25 TCGA-CD-8531-01 11 105924893 105924893 G C KBTBD3 Missense_Mutation p.H175D 0.40 tolerated(0.62) benign(0) TCGA-CD-8531-01 11 12231128 12231128 G A MICAL2 Missense_Mutation p.R225H 0.43 deleterious(0.01) benign(0.013) TCGA-CD-8531-01 11 12244261 12244261 C G MICAL2 Missense_Mutation p.L474V 0.42 tolerated(0.15) probably_damaging(0.968) TCGA-CD-8531-01 11 123894055 123894055 C A OR10G9 Missense_Mutation p.F112L 0.15 tolerated(0.14) probably_damaging(0.998) TCGA-CD-8531-01 11 1275470 1275470 G A MUC5B Silent p.T5122T 0.57 TCGA-CD-8531-01 11 17156677 17156677 A T PIK3C2A Silent p.T626T 0.36 TCGA-CD-8531-01 11 27114876 27114876 G T BBOX1 Missense_Mutation p.G166W 0.34 deleterious(0) probably_damaging(1) TCGA-CD-8531-01 11 27434338 27434338 C G LGR4 Missense_Mutation p.E85D 0.35 deleterious(0.01) benign(0.261) TCGA-CD-8531-01 11 47303141 47303141 A T MADD Missense_Mutation p.S436C 0.33 deleterious(0) probably_damaging(0.993) TCGA-CD-8531-01 11 62762176 62762176 C T SLC22A8 Missense_Mutation p.G352R 0.49 deleterious(0) probably_damaging(1) TCGA-CD-8531-01 11 64603908 64603908 T C CDC42BPG Silent p.R493R 0.29 TCGA-CD-8531-01 11 64889890 64889890 G A MRPL49 Silent p.R24R 0.55 TCGA-CD-8531-01 11 6942645 6942645 G A OR2D3 Missense_Mutation p.R138Q 0.40 deleterious(0) benign(0.423) TCGA-CD-8531-01 11 7021385 7021385 C T ZNF214 Missense_Mutation p.R510H 0.05 tolerated(0.24) benign(0.057) TCGA-CD-8531-01 11 78413244 78413244 C T TENM4 Missense_Mutation p.A1472T 0.44 tolerated(0.05) possibly_damaging(0.508) TCGA-CD-8531-01 11 8728732 8728732 G A ST5 Missense_Mutation p.A824V 0.46 deleterious(0) benign(0.336) TCGA-CD-8531-01 11 89537243 89537243 G T TRIM49 Missense_Mutation p.A132D 0.15 deleterious(0) probably_damaging(0.995) TCGA-CD-8531-01 11 92086032 92086032 C A FAT3 Missense_Mutation p.L252I 0.43 probably_damaging(0.999) TCGA-CD-8531-01 11 92088462 92088462 G A FAT3 Missense_Mutation p.V1062M 0.43 probably_damaging(0.974) TCGA-CD-8531-01 12 110221548 110221548 G A TRPV4 Silent p.L832L 0.24 TCGA-CD-8531-01 12 111745053 111745053 G A CUX2 Silent p.T367T 0.46 TCGA-CD-8531-01 12 112451194 112451195 - T ERP29 5'UTR 0.30 TCGA-CD-8531-01 12 113496170 113496170 G C DTX1 Missense_Mutation p.G58A 0.32 deleterious(0.01) benign(0.278) TCGA-CD-8531-01 12 113496241 113496241 T C DTX1 Missense_Mutation p.F82L 0.32 deleterious(0.01) benign(0.002) TCGA-CD-8531-01 12 114832618 114832618 T G TBX5 Missense_Mutation p.K197N 0.24 deleterious(0.01) possibly_damaging(0.498) TCGA-CD-8531-01 12 120530908 120530908 G A CCDC64 Silent p.G555G 0.21 TCGA-CD-8531-01 12 130648561 130648561 C A FZD10 Silent p.A358A 0.25 TCGA-CD-8531-01 12 130923044 130923044 G A RIMBP2 Nonsense_Mutation p.Q491* 0.44 TCGA-CD-8531-01 12 29757182 29757182 C T TMTC1 Silent p.P393P 0.24 TCGA-CD-8531-01 12 33538177 33538177 G A SYT10 Missense_Mutation p.T376M 0.34 deleterious(0) possibly_damaging(0.521) TCGA-CD-8531-01 12 39726475 39726475 A C KIF21A Missense_Mutation p.L925R 0.44 deleterious(0.02) benign(0.317) TCGA-CD-8531-01 12 48441861 48441861 A G SENP1 Silent p.V538V 0.41 TCGA-CD-8531-01 12 57037231 57037231 T A ATP5B Missense_Mutation p.M250L 0.45 deleterious_low_confidence(0.03) benign(0.145) TCGA-CD-8531-01 12 66788079 66788079 C T GRIP1 Missense_Mutation p.G628R 0.24 deleterious(0) probably_damaging(0.997) TCGA-CD-8531-01 12 70960283 70960283 T A PTPRB Missense_Mutation p.Y1279F 0.31 deleterious(0) probably_damaging(1) TCGA-CD-8531-01 12 85441135 85441135 C T LRRIQ1 Missense_Mutation p.L189F 0.54 deleterious(0.04) probably_damaging(0.995) TCGA-CD-8531-01 12 95610999 95610999 A T FGD6 Splice_Site p.X6_splice 0.47 TCGA-CD-8531-01 13 108518853 108518853 T C FAM155A Missense_Mutation p.D31G 0.31 deleterious(0) probably_damaging(0.995) TCGA-CD-8531-01 13 113470426 113470426 C T ATP11A Silent p.D157D 0.34 TCGA-CD-8531-01 13 32868606 32868606 C T FRY Silent p.S2894S 0.40 TCGA-CD-8531-01 13 37439852 37439852 C T SMAD9 Silent p.S275S 0.33 TCGA-CD-8531-01 13 49906110 49906110 G A CAB39L Silent p.I269I 0.44 TCGA-CD-8531-01 13 50495695 50495695 C T SPRYD7 Missense_Mutation p.E138K 0.49 deleterious(0) possibly_damaging(0.557) TCGA-CD-8531-01 13 52854009 52854009 C A RP11-248G5.8 RNA 0.41 TCGA-CD-8531-01 13 61985915 61985915 C T PCDH20 Missense_Mutation p.D773N 0.31 deleterious(0) probably_damaging(1) TCGA-CD-8531-01 13 64321303 64321303 A C AL445989.1 Silent p.R124R 0.40 TCGA-CD-8531-01 13 74420392 74420392 G A KLF12 Missense_Mutation p.P81L 0.30 deleterious(0) probably_damaging(0.997) TCGA-CD-8531-01 13 84454002 84454002 C T SLITRK1 Silent p.L547L 0.11 TCGA-CD-8531-01 13 88329436 88329436 T A SLITRK5 Missense_Mutation p.F598Y 0.39 tolerated(0.57) possibly_damaging(0.642) TCGA-CD-8531-01 14 100728767 100728767 A G YY1 Missense_Mutation p.D269G 0.40 deleterious(0.01) possibly_damaging(0.53) TCGA-CD-8531-01 14 103430900 103430900 C - CDC42BPB Frame_Shift_Del p.A889Pfs*23 0.41 TCGA-CD-8531-01 14 105412335 105412335 C T AHNAK2 Silent p.P3151P 0.38 TCGA-CD-8531-01 14 106110112 106110112 T C IGHG2 Missense_Mutation p.K169R 0.36 tolerated(0.38) benign(0.206) TCGA-CD-8531-01 14 106805256 106805256 G A IGHV4-31 Silent p.L103L 0.56 TCGA-CD-8531-01 14 106805301 106805301 C T IGHV4-31 Missense_Mutation p.V88I 0.68 tolerated_low_confidence(0.88) benign(0.026) TCGA-CD-8531-01 14 106805443 106805443 G A IGHV4-31 Silent p.T40T 0.70 TCGA-CD-8531-01 14 106805493 106805493 G T IGHV4-31 Missense_Mutation p.Q24K 0.68 tolerated_low_confidence(0.14) possibly_damaging(0.902) TCGA-CD-8531-01 14 106829738 106829738 C T IGHV4-34 Silent p.G75G 0.41 TCGA-CD-8531-01 14 106829780 106829780 G C IGHV4-34 Missense_Mutation p.S61R 0.49 tolerated(0.12) benign(0.03) TCGA-CD-8531-01 14 106829781 106829781 C T IGHV4-34 Missense_Mutation p.S61N 0.35 tolerated(0.49) benign(0.007) TCGA-CD-8531-01 14 106829800 106829800 A G IGHV4-34 Missense_Mutation p.F55L 0.52 tolerated(0.32) benign(0) TCGA-CD-8531-01 14 107178876 107178876 G A IGHV2-70 Missense_Mutation p.L101F 0.48 deleterious(0.03) possibly_damaging(0.849) TCGA-CD-8531-01 14 107178923 107178923 T C IGHV2-70 Missense_Mutation p.K85R 0.22 deleterious(0.05) benign(0.001) TCGA-CD-8531-01 14 107178944 107178944 T C IGHV2-70 Missense_Mutation p.K78R 0.41 deleterious(0.01) benign(0.311) TCGA-CD-8531-01 14 107179080 107179080 G A IGHV2-70 Missense_Mutation p.P33S 0.35 deleterious(0) possibly_damaging(0.569) TCGA-CD-8531-01 14 107179102 107179102 C T IGHV2-70 Silent p.E25E 0.41 TCGA-CD-8531-01 14 107179123 107179123 T A IGHV2-70 Missense_Mutation p.L18F 0.37 deleterious(0.01) benign(0.008) TCGA-CD-8531-01 14 107179262 107179262 T G IGHV2-70 Translation_Start_Site p.M1? 0.22 deleterious(0.03) possibly_damaging(0.667) TCGA-CD-8531-01 14 24845265 24845265 C T NFATC4 Missense_Mutation p.R735W 0.41 deleterious(0) probably_damaging(0.995) TCGA-CD-8531-01 14 73459883 73459883 G A ZFYVE1 Missense_Mutation p.R391W 0.32 deleterious(0) possibly_damaging(0.777) TCGA-CD-8531-01 14 99641074 99641074 G A BCL11B Missense_Mutation p.A700V 0.45 tolerated(0.18) benign(0.003) TCGA-CD-8531-01 15 22368747 22368747 C T OR4M2 Missense_Mutation p.P58S 0.18 deleterious(0) probably_damaging(0.998) TCGA-CD-8531-01 15 30010720 30010720 G A TJP1 Missense_Mutation p.S1209F 0.38 tolerated_low_confidence(0.12) benign(0.14) TCGA-CD-8531-01 15 35814445 35814445 T C DPH6 Intron 0.25 TCGA-CD-8531-01 15 39874438 39874438 G - THBS1 Frame_Shift_Del p.A39Pfs*11 0.33 TCGA-CD-8531-01 15 40590080 40590080 G A PLCB2 Silent p.D412D 0.34 TCGA-CD-8531-01 15 42003115 42003115 T G MGA Nonsense_Mutation p.Y884* 0.40 TCGA-CD-8531-01 15 42111038 42111038 G A MAPKBP1 Missense_Mutation p.R731H 0.48 deleterious(0) possibly_damaging(0.891) TCGA-CD-8531-01 15 42180152 42180152 G T SPTBN5 Silent p.G211G 0.23 TCGA-CD-8531-01 15 44120184 44120184 C T WDR76 Nonsense_Mutation p.Q28* 0.46 TCGA-CD-8531-01 15 75703974 75703974 C T SIN3A Silent p.S289S 0.41 TCGA-CD-8531-01 15 78211370 78211370 C T RP11-114H24.7 Intron 0.32 TCGA-CD-8531-01 15 89760390 89760390 G A RLBP1 Missense_Mutation p.R103W 0.33 deleterious(0) probably_damaging(1) TCGA-CD-8531-01 16 19278368 19278368 C T SYT17 Silent p.R465R 0.45 TCGA-CD-8531-01 16 20043163 20043163 A T GPR139 Missense_Mutation p.F319Y 0.38 tolerated(0.65) probably_damaging(0.952) TCGA-CD-8531-01 16 2223541 2223541 G A TRAF7 Missense_Mutation p.A358T 0.47 tolerated(0.4) benign(0.005) TCGA-CD-8531-01 16 30199729 30199729 C A CORO1A Missense_Mutation p.D371E 0.40 tolerated(1) benign(0.002) TCGA-CD-8531-01 16 56667308 56667308 T A MT1M Missense_Mutation p.C29S 0.41 deleterious(0.01) benign(0.415) TCGA-CD-8531-01 16 89337295 89337295 C T ANKRD11 Missense_Mutation p.R2579H 0.36 probably_damaging(0.999) TCGA-CD-8531-01 17 16724007 16724007 G A AC022596.6 RNA 0.94 TCGA-CD-8531-01 17 26646362 26646362 G C TMEM97 Missense_Mutation p.V33L 0.18 tolerated(1) benign(0.018) TCGA-CD-8531-01 17 26817568 26817568 G A SLC13A2 Missense_Mutation p.A159T 0.30 deleterious(0) probably_damaging(1) TCGA-CD-8531-01 17 37607465 37607465 G A MED1 5'UTR 0.13 TCGA-CD-8531-01 17 42426659 42426659 C T GRN Missense_Mutation p.R43C 0.90 deleterious(0.01) benign(0.205) TCGA-CD-8531-01 17 63052588 63052588 T C GNA13 Missense_Mutation p.K42E 0.78 deleterious(0) probably_damaging(0.989) TCGA-CD-8531-01 17 63052626 63052626 C T GNA13 Missense_Mutation p.R29H 0.77 deleterious(0.02) possibly_damaging(0.903) TCGA-CD-8531-01 17 73389691 73389691 A C GRB2 Missense_Mutation p.Y7D 0.85 deleterious(0.01) possibly_damaging(0.771) TCGA-CD-8531-01 17 7463198 7463198 G A TNFSF12-TNFSF13 Missense_Mutation p.A205T 0.31 tolerated_low_confidence(0.53) benign(0.019) TCGA-CD-8531-01 17 7577556 7577556 C T TP53 Missense_Mutation p.C242Y 0.47 deleterious(0) probably_damaging(1) TCGA-CD-8531-01 17 80194605 80194605 G A SLC16A3 Missense_Mutation p.G75D 0.44 deleterious(0) probably_damaging(1) TCGA-CD-8531-01 18 19283682 19283682 C T ABHD3 Silent p.E63E 0.35 TCGA-CD-8531-01 18 40323568 40323568 G A RIT2 Missense_Mutation p.R182C 0.40 deleterious(0) probably_damaging(0.998) TCGA-CD-8531-01 18 7926570 7926570 G T PTPRM Missense_Mutation p.R184S 0.35 tolerated(0.21) benign(0.005) TCGA-CD-8531-01 19 12060673 12060673 A T ZNF700 Missense_Mutation p.R612W 0.41 deleterious(0) probably_damaging(0.997) TCGA-CD-8531-01 19 15299139 15299139 C T NOTCH3 Missense_Mutation p.E467K 0.17 deleterious(0) probably_damaging(0.969) TCGA-CD-8531-01 19 2191099 2191099 C T DOT1L Missense_Mutation p.S118L 0.37 deleterious(0) probably_damaging(0.999) TCGA-CD-8531-01 19 2934551 2934551 A T ZNF77 Missense_Mutation p.C192S 0.38 tolerated(0.09) benign(0.152) TCGA-CD-8531-01 19 35524615 35524615 G C SCN1B Missense_Mutation p.K140N 0.37 deleterious(0.01) probably_damaging(0.973) TCGA-CD-8531-01 19 36214856 36214856 C T KMT2B Silent p.D1094D 0.40 TCGA-CD-8531-01 19 40421393 40421393 G A FCGBP Missense_Mutation p.A843V 0.50 benign(0.357) TCGA-CD-8531-01 19 42222079 42222079 T C CEACAM5 Missense_Mutation p.Y424H 0.37 tolerated(0.28) benign(0.083) TCGA-CD-8531-01 19 44169538 44169538 C G PLAUR Silent p.R80R 0.53 TCGA-CD-8531-01 19 53857361 53857361 G A ZNF845 3'UTR 0.27 TCGA-CD-8531-01 19 53960040 53960040 G C ZNF761 RNA 0.41 TCGA-CD-8531-01 19 55250954 55250954 G A KIR2DL3 Silent p.G12G 0.27 TCGA-CD-8531-01 19 55494276 55494276 G A NLRP2 Missense_Mutation p.V404M 0.45 deleterious(0.01) probably_damaging(0.971) TCGA-CD-8531-01 19 57022924 57022924 C A ZNF471 5'UTR 0.52 TCGA-CD-8531-01 19 7809857 7809857 C G CD209 Missense_Mutation p.Q290H 0.38 deleterious(0) benign(0.295) TCGA-CD-8531-01 19 8613174 8613174 G C MYO1F Missense_Mutation p.Q377E 0.35 tolerated(0.81) benign(0.005) TCGA-CD-8531-01 19 8995977 8995977 C T MUC16 Missense_Mutation p.R13755Q 0.27 possibly_damaging(0.719) TCGA-CD-8531-01 1 10239484 10239484 G A UBE4B Missense_Mutation p.M1237I 0.39 deleterious(0.03) probably_damaging(0.954) TCGA-CD-8531-01 1 12337490 12337490 G A VPS13D Missense_Mutation p.C1282Y 0.45 benign(0.059) TCGA-CD-8531-01 1 12908231 12908231 C T HNRNPCL1 5'UTR 0.10 TCGA-CD-8531-01 1 149883495 149883495 G T SV2A Missense_Mutation p.F220L 0.39 tolerated(0.25) benign(0.261) TCGA-CD-8531-01 1 152785212 152785212 G A LCE1B Missense_Mutation p.S97N 0.56 tolerated_low_confidence(0.63) unknown(0) TCGA-CD-8531-01 1 154514512 154514512 G A TDRD10 Missense_Mutation p.A128T 0.50 tolerated(0.25) benign(0.002) TCGA-CD-8531-01 1 161642904 161642904 G A FCGR2B Silent p.S177S 0.23 TCGA-CD-8531-01 1 16254749 16254749 C T SPEN Nonsense_Mutation p.R672* 0.52 TCGA-CD-8531-01 1 17023290 17023290 C A ESPNP RNA 0.14 TCGA-CD-8531-01 1 19448467 19448467 G A UBR4 Nonsense_Mutation p.R3286* 0.40 TCGA-CD-8531-01 1 19499975 19499975 C T UBR4 Nonsense_Mutation p.W1041* 0.32 TCGA-CD-8531-01 1 204588977 204588977 G A LRRN2 Silent p.R48R 0.52 TCGA-CD-8531-01 1 214507514 214507514 G T SMYD2 Intron 0.33 TCGA-CD-8531-01 1 214576291 214576291 C T PTPN14 Silent p.L172L 0.40 TCGA-CD-8531-01 1 223408301 223408301 A C SUSD4 Intron 0.33 TCGA-CD-8531-01 1 225599126 225599126 A G LBR Silent p.D367D 0.45 TCGA-CD-8531-01 1 226924472 226924473 - CTGCGAGGAG ITPKB Frame_Shift_Ins p.V230Lfs*50 0.20 TCGA-CD-8531-01 1 228437876 228437876 C T OBSCN Missense_Mutation p.A1507V 0.48 benign(0.012) TCGA-CD-8531-01 1 244662322 244662322 T C C1orf101 Missense_Mutation p.Y124H 0.35 deleterious(0) probably_damaging(1) TCGA-CD-8531-01 1 39879387 39879387 G A KIAA0754 Silent p.V1014V 0.50 TCGA-CD-8531-01 1 47603140 47603140 T C CYP4A22 5'UTR 0.32 TCGA-CD-8531-01 1 55464928 55464928 G A BSND Silent p.T23T 0.42 TCGA-CD-8531-01 1 57499085 57499085 A G DAB1 Intron 0.29 TCGA-CD-8531-01 1 67145427 67145427 T C SGIP1 Missense_Mutation p.I269T 0.43 tolerated_low_confidence(0.23) benign(0) TCGA-CD-8531-01 1 89848368 89848368 A C GBP6 Missense_Mutation p.K433T 0.44 tolerated(0.3) benign(0.035) TCGA-CD-8531-01 1 91817190 91817190 G C HFM1 Missense_Mutation p.T663R 0.46 deleterious(0) possibly_damaging(0.643) TCGA-CD-8531-01 20 1356212 1356212 G A FKBP1A Missense_Mutation p.R41W 0.42 deleterious(0.03) benign(0.143) TCGA-CD-8531-01 20 57569712 57569712 A C NELFCD Missense_Mutation p.N594T 0.37 deleterious_low_confidence(0.01) possibly_damaging(0.784) TCGA-CD-8531-01 20 57766977 57766977 G A ZNF831 Silent p.L301L 0.43 TCGA-CD-8531-01 20 60509180 60509180 G A CDH4 Missense_Mutation p.V816M 0.36 deleterious(0) possibly_damaging(0.751) TCGA-CD-8531-01 20 60921763 60921763 C T LAMA5 Missense_Mutation p.G389D 0.45 probably_damaging(1) TCGA-CD-8531-01 20 9520159 9520159 C G PAK7 Missense_Mutation p.G704R 0.09 deleterious(0) probably_damaging(1) TCGA-CD-8531-01 22 23214065 23214065 C T IGLV4-3 Silent p.S74S 0.29 TCGA-CD-8531-01 22 23223344 23223344 C T IGLV3-1 Silent p.S38S 0.34 TCGA-CD-8531-01 22 23223347 23223347 C T IGLV3-1 Silent p.I39I 0.35 TCGA-CD-8531-01 22 23223420 23223420 C T IGLV3-1 Silent p.L64L 0.75 TCGA-CD-8531-01 22 23223440 23223440 C T IGLV3-1 Silent p.S70S 0.58 TCGA-CD-8531-01 22 23223452 23223452 A G IGLV3-1 Silent p.S74S 0.16 TCGA-CD-8531-01 22 23223541 23223541 A T IGLV3-1 Missense_Mutation p.Y104F 0.24 deleterious(0) probably_damaging(0.993) TCGA-CD-8531-01 22 23223565 23223565 G C IGLV3-1 Missense_Mutation p.S112T 0.25 tolerated(0.09) benign(0.145) TCGA-CD-8531-01 22 29195982 29195982 T A XBP1 Intron 0.43 TCGA-CD-8531-01 22 29196031 29196031 C T XBP1 Intron 0.58 TCGA-CD-8531-01 22 38075624 38075624 C T LGALS1 Silent p.F92F 0.09 TCGA-CD-8531-01 22 42321376 42321376 G A TNFRSF13C Nonsense_Mutation p.Q184* 0.25 TCGA-CD-8531-01 22 50753285 50753285 A T DENND6B Missense_Mutation p.L275Q 0.43 deleterious(0) probably_damaging(0.981) TCGA-CD-8531-01 2 121043489 121043489 A G RALB Missense_Mutation p.R52G 0.51 deleterious(0) probably_damaging(0.986) TCGA-CD-8531-01 2 131099517 131099517 C A CCDC115 Missense_Mutation p.G38C 0.29 deleterious(0) probably_damaging(1) TCGA-CD-8531-01 2 133174980 133174980 C T GPR39 Missense_Mutation p.T122M 0.34 deleterious(0) probably_damaging(0.999) TCGA-CD-8531-01 2 136633970 136633970 C T MCM6 5'UTR 0.67 TCGA-CD-8531-01 2 144764846 144764846 C T GTDC1 Missense_Mutation p.G260S 0.38 tolerated_low_confidence(0.65) benign(0.066) TCGA-CD-8531-01 2 152107671 152107671 G A RBM43 Missense_Mutation p.H275Y 0.34 tolerated(0.86) benign(0.005) TCGA-CD-8531-01 2 174047623 174047623 A T MLTK Missense_Mutation p.N97Y 0.47 deleterious(0.01) probably_damaging(0.942) TCGA-CD-8531-01 2 175976308 175976308 T C ATF2 Silent p.S272S 0.38 TCGA-CD-8531-01 2 179396580 179396583 TGAG - TTN Frame_Shift_Del p.T34920Rfs*11 0.25 TCGA-CD-8531-01 2 179407894 179407894 T C TTN Missense_Mutation p.E32269G 0.08 TCGA-CD-8531-01 2 219920533 219920533 C T IHH Missense_Mutation p.R211H 0.44 tolerated(0.58) possibly_damaging(0.684) TCGA-CD-8531-01 2 241530408 241530408 A G CAPN10 Silent p.L150L 0.38 TCGA-CD-8531-01 2 26678055 26678055 A T DRC1 Missense_Mutation p.Q707L 0.41 deleterious(0) probably_damaging(0.954) TCGA-CD-8531-01 2 27656863 27656863 T G NRBP1 Missense_Mutation p.V114G 0.38 deleterious(0) possibly_damaging(0.685) TCGA-CD-8531-01 2 30142909 30142909 G A ALK Missense_Mutation p.A206V 0.36 deleterious_low_confidence(0.01) benign(0.057) TCGA-CD-8531-01 2 46815247 46815247 T C PIGF Intron 0.53 TCGA-CD-8531-01 2 60688687 60688687 C T BCL11A Missense_Mutation p.D454N 0.44 tolerated(0.24) possibly_damaging(0.555) TCGA-CD-8531-01 2 61188647 61188647 T C PUS10 Silent p.V275V 0.29 TCGA-CD-8531-01 2 89161035 89161035 A G IGKC 5'Flank 0.43 TCGA-CD-8531-01 2 89161421 89161421 T C IGKJ1 Missense_Mutation p.Q6R 0.75 unknown(0) TCGA-CD-8531-01 2 89161441 89161441 T C IGKC 5'Flank 0.67 TCGA-CD-8531-01 2 89185491 89185491 A G IGKV4-1 Missense_Mutation p.Y62C 0.67 deleterious(0.02) possibly_damaging(0.452) TCGA-CD-8531-01 2 89247054 89247054 T C IGKV1-5 Missense_Mutation p.D39G 0.75 tolerated(0.1) benign(0.308) TCGA-CD-8531-01 2 96920726 96920726 A G TMEM127 Missense_Mutation p.M85T 0.37 deleterious(0.02) benign(0.017) TCGA-CD-8531-01 2 96949033 96949033 G A SNRNP200 Silent p.S1607S 0.33 TCGA-CD-8531-01 3 109046686 109046686 T C DPPA4 3'UTR 0.48 TCGA-CD-8531-01 3 126201173 126201173 C T UROC1 3'UTR 0.35 TCGA-CD-8531-01 3 129231237 129231237 C T IFT122 Missense_Mutation p.P1041L 0.06 tolerated(0.67) benign(0.072) TCGA-CD-8531-01 3 130424447 130424451 TCTGC - PIK3R4 Frame_Shift_Del p.K962Nfs*6 0.31 TCGA-CD-8531-01 3 131082272 131082272 T C NUDT16P1 RNA 0.36 TCGA-CD-8531-01 3 150480426 150480426 G C SIAH2 Missense_Mutation p.H71D 0.38 tolerated(0.44) benign(0.017) TCGA-CD-8531-01 3 150480427 150480427 C A SIAH2 Missense_Mutation p.Q70H 0.38 deleterious(0.05) possibly_damaging(0.781) TCGA-CD-8531-01 3 196674283 196674283 C T PIGZ Silent p.L495L 0.47 TCGA-CD-8531-01 3 30713931 30713931 T G TGFBR2 Splice_Site p.X443_splice 0.41 TCGA-CD-8531-01 3 3095653 3095653 A G CNTN4 Missense_Mutation p.I992V 0.23 tolerated(0.1) unknown(0) TCGA-CD-8531-01 4 103517342 103517342 A C NFKB1 Missense_Mutation p.S450R 0.36 tolerated(0.47) benign(0.034) TCGA-CD-8531-01 4 110915908 110915908 C T EGF Silent p.H959H 0.42 TCGA-CD-8531-01 4 114195727 114195727 C T ANK2 Silent p.H535H 0.33 TCGA-CD-8531-01 4 125592169 125592169 C A ANKRD50 Missense_Mutation p.A755S 0.40 tolerated(0.08) probably_damaging(0.992) TCGA-CD-8531-01 4 126241663 126241663 G A FAT4 Missense_Mutation p.S1366N 0.45 probably_damaging(0.932) TCGA-CD-8531-01 4 126370525 126370525 C - FAT4 Frame_Shift_Del p.L2787* 0.27 TCGA-CD-8531-01 4 126412365 126412365 C T FAT4 Silent p.N4796N 0.37 TCGA-CD-8531-01 4 134072395 134072395 T C PCDH10 Missense_Mutation p.V367A 0.44 deleterious(0) probably_damaging(0.997) TCGA-CD-8531-01 4 134073610 134073610 G C PCDH10 Missense_Mutation p.G772A 0.30 tolerated(0.18) benign(0.005) TCGA-CD-8531-01 4 147561803 147561803 G A POU4F2 Missense_Mutation p.R358H 0.45 deleterious(0.03) possibly_damaging(0.646) TCGA-CD-8531-01 4 177081171 177081171 A G WDR17 Missense_Mutation p.D875G 0.38 tolerated(0.12) possibly_damaging(0.474) TCGA-CD-8531-01 4 177081215 177081215 A C WDR17 Missense_Mutation p.K890Q 0.43 tolerated(0.14) benign(0.19) TCGA-CD-8531-01 4 183672997 183672997 C T TENM3 Missense_Mutation p.T1225M 0.40 deleterious(0.01) benign(0.012) TCGA-CD-8531-01 4 39904078 39904078 A T PDS5A Missense_Mutation p.L463Q 0.43 deleterious(0) probably_damaging(0.996) TCGA-CD-8531-01 4 41748140 41748140 G A PHOX2B Missense_Mutation p.A210V 0.46 deleterious_low_confidence(0.03) unknown(0) TCGA-CD-8531-01 4 62775347 62775347 G T LPHN3 Missense_Mutation p.A585S 0.44 tolerated(0.05) benign(0.074) TCGA-CD-8531-01 4 79402981 79402981 C T FRAS1 Missense_Mutation p.R2823C 0.35 probably_damaging(0.995) TCGA-CD-8531-01 4 88534064 88534064 C T DSPP Silent p.S242S 0.38 TCGA-CD-8531-01 4 91549260 91549260 G A CCSER1 Silent p.A603A 0.45 TCGA-CD-8531-01 4 96075957 96075957 C T BMPR1B 3'UTR 0.67 TCGA-CD-8531-01 4 98480197 98480197 C A STPG2 3'UTR 0.34 TCGA-CD-8531-01 5 140011395 140011395 C T CD14 3'UTR 0.46 TCGA-CD-8531-01 5 140081626 140081626 C T ZMAT2 Missense_Mutation p.R50W 0.38 deleterious(0.02) benign(0.001) TCGA-CD-8531-01 5 140250985 140250985 C T PCDHA11 Missense_Mutation p.T766M 0.32 deleterious_low_confidence(0.03) benign(0.097) TCGA-CD-8531-01 5 150885490 150885490 G A FAT2 Missense_Mutation p.P4229L 0.38 probably_damaging(1) TCGA-CD-8531-01 5 160047922 160047922 C T ATP10B Silent p.T616T 0.36 TCGA-CD-8531-01 5 173473785 173473785 C T NSG2 Silent p.S9S 0.41 TCGA-CD-8531-01 5 176314553 176314553 A C HK3 Missense_Mutation p.V500G 0.39 deleterious(0) probably_damaging(0.997) TCGA-CD-8531-01 5 176894259 176894259 G A DBN1 Silent p.A186A 0.37 TCGA-CD-8531-01 5 19721471 19721471 C T CDH18 Missense_Mutation p.V210I 0.39 tolerated(0.1) probably_damaging(0.963) TCGA-CD-8531-01 5 39382787 39382787 T C DAB2 Missense_Mutation p.H425R 0.05 tolerated(0.14) benign(0.197) TCGA-CD-8531-01 6 106554286 106554286 G A PRDM1 Missense_Mutation p.C605Y 0.06 deleterious(0) probably_damaging(0.987) TCGA-CD-8531-01 6 138539066 138539066 G T PBOV1 3'UTR 0.43 TCGA-CD-8531-01 6 139488008 139488008 G - HECA Frame_Shift_Del p.G287Afs*12 0.33 TCGA-CD-8531-01 6 139488378 139488378 A - HECA Frame_Shift_Del p.Q410Rfs*11 0.29 TCGA-CD-8531-01 6 155451015 155451015 G A TIAM2 Missense_Mutation p.A220T 0.38 tolerated_low_confidence(0.4) benign(0.002) TCGA-CD-8531-01 6 159239220 159239220 T A EZR Intron 0.47 TCGA-CD-8531-01 6 167550723 167550723 G A CCR6 Nonsense_Mutation p.W335* 0.37 TCGA-CD-8531-01 6 17629625 17629625 A C NUP153 Silent p.G935G 0.41 TCGA-CD-8531-01 6 26056223 26056223 G C HIST1H1C Missense_Mutation p.A145G 0.54 tolerated(0.1) unknown(0) TCGA-CD-8531-01 6 26056250 26056250 T A HIST1H1C Missense_Mutation p.K136M 0.37 deleterious(0) unknown(0) TCGA-CD-8531-01 6 26056324 26056334 TGCCTTCTTGT - HIST1H1C Frame_Shift_Del p.N108Sfs*10 0.41 TCGA-CD-8531-01 6 27114211 27114211 T C HIST1H2BK Missense_Mutation p.T123A 0.21 deleterious_low_confidence(0.03) benign(0.045) TCGA-CD-8531-01 6 27114498 27114498 C T HIST1H2BK Missense_Mutation p.G27D 0.28 tolerated_low_confidence(0.19) unknown(0) TCGA-CD-8531-01 6 27782505 27782505 C A HIST1H2AJ Missense_Mutation p.G5V 0.30 deleterious_low_confidence(0) unknown(0) TCGA-CD-8531-01 6 27792077 27792077 C T HIST1H4J Silent p.L59L 0.30 TCGA-CD-8531-01 6 29142227 29142227 G A OR2J2 Missense_Mutation p.G272D 0.38 deleterious(0.03) benign(0.238) TCGA-CD-8531-01 6 31324659 31324659 C T HLA-B Missense_Mutation p.G50D 0.89 deleterious_low_confidence(0) probably_damaging(1) TCGA-CD-8531-01 6 31922644 31922644 G C NELFE Missense_Mutation p.R144G 0.45 tolerated_low_confidence(0.15) benign(0.028) TCGA-CD-8531-01 6 33411705 33411705 G A SYNGAP1 Missense_Mutation p.G1126S 0.57 tolerated(1) benign(0.097) TCGA-CD-8531-01 6 35773520 35773520 G C LHFPL5 Missense_Mutation p.V25L 0.42 deleterious(0.01) benign(0.42) TCGA-CD-8531-01 6 37344811 37344811 T G RNF8 Splice_Site p.X412_splice 0.30 TCGA-CD-8531-01 6 43029177 43029177 C T KLC4 Missense_Mutation p.A53V 0.45 deleterious(0) probably_damaging(0.986) TCGA-CD-8531-01 6 74227767 74227767 T C EEF1A1 Missense_Mutation p.D417G 0.40 deleterious_low_confidence(0) benign(0.263) TCGA-CD-8531-01 6 74229194 74229209 TCAGTTTATCCAAGAC - EEF1A1 Frame_Shift_Del p.V59Kfs*24 0.27 TCGA-CD-8531-01 6 84234217 84234217 C T PRSS35 Missense_Mutation p.R353C 0.28 deleterious(0) probably_damaging(1) TCGA-CD-8531-01 6 87965269 87965269 A G ZNF292 Missense_Mutation p.Y641C 0.42 tolerated(0.08) probably_damaging(0.981) TCGA-CD-8531-01 7 100491479 100491479 C A ACHE Missense_Mutation p.E125D 0.34 deleterious(0) probably_damaging(0.997) TCGA-CD-8531-01 7 111430549 111430549 C A DOCK4 Missense_Mutation p.M1093I 0.29 tolerated(0.08) benign(0.407) TCGA-CD-8531-01 7 121653617 121653617 C T PTPRZ1 Missense_Mutation p.P1506L 0.37 tolerated_low_confidence(0.58) benign(0.002) TCGA-CD-8531-01 7 121698906 121698906 C T PTPRZ1 Missense_Mutation p.P2194L 0.43 deleterious(0.01) possibly_damaging(0.48) TCGA-CD-8531-01 7 123296099 123296099 G A LMOD2 Missense_Mutation p.E28K 0.35 deleterious(0) probably_damaging(0.998) TCGA-CD-8531-01 7 131151138 131151138 T G MKLN1 Nonsense_Mutation p.L631* 0.42 TCGA-CD-8531-01 7 14216309 14216309 T C DGKB Intron 0.45 TCGA-CD-8531-01 7 142650947 142650947 C G KEL Missense_Mutation p.E341Q 0.36 deleterious(0) probably_damaging(0.924) TCGA-CD-8531-01 7 144060683 144060683 G A ARHGEF5 Silent p.Q307Q 0.14 TCGA-CD-8531-01 7 146805422 146805422 T C CNTNAP2 Missense_Mutation p.L245P 0.52 deleterious(0) probably_damaging(0.998) TCGA-CD-8531-01 7 149558351 149558351 T C ZNF862 Missense_Mutation p.M701T 0.12 tolerated(0.12) benign(0.004) TCGA-CD-8531-01 7 151845319 151845319 G - KMT2C Frame_Shift_Del p.Q4565Rfs*61 0.29 TCGA-CD-8531-01 7 151878910 151878910 G - KMT2C Frame_Shift_Del p.P2012Lfs*20 0.29 TCGA-CD-8531-01 7 151893050 151893050 T C KMT2C Silent p.T1440T 0.52 TCGA-CD-8531-01 7 1937852 1937852 T C MAD1L1 Missense_Mutation p.D661G 0.35 deleterious(0) probably_damaging(1) TCGA-CD-8531-01 7 33217127 33217127 G C BBS9 Missense_Mutation p.Q122H 0.32 tolerated(0.14) benign(0.236) TCGA-CD-8531-01 7 50566911 50566911 C A DDC Missense_Mutation p.D271Y 0.46 deleterious(0) probably_damaging(1) TCGA-CD-8531-01 7 80418653 80418653 A G SEMA3C Silent p.D441D 0.31 TCGA-CD-8531-01 7 87760798 87760798 A C ADAM22 Intron 0.42 TCGA-CD-8531-01 7 92099520 92099520 G A ERVW-1 Missense_Mutation p.T59I 0.41 deleterious_low_confidence(0.04) benign(0) TCGA-CD-8531-01 7 94539579 94539579 C T PPP1R9A Nonsense_Mutation p.Q52* 0.31 TCGA-CD-8531-01 7 97991713 97991713 C T BAIAP2L1 Missense_Mutation p.R28Q 0.30 deleterious(0) probably_damaging(1) TCGA-CD-8531-01 8 101730329 101730329 T G PABPC1 Missense_Mutation p.I125L 0.19 deleterious(0) possibly_damaging(0.449) TCGA-CD-8531-01 8 101936211 101936211 A C YWHAZ Missense_Mutation p.I217R 0.40 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-CD-8531-01 8 105503072 105503072 T C LRP12 Silent p.G803G 0.43 TCGA-CD-8531-01 8 109001352 109001352 C G RSPO2 Missense_Mutation p.G72A 0.34 deleterious(0.01) probably_damaging(0.922) TCGA-CD-8531-01 8 113694863 113694863 A G CSMD3 Missense_Mutation p.F829L 0.36 deleterious(0.01) probably_damaging(0.995) TCGA-CD-8531-01 8 142506543 142506543 C A MROH5 Missense_Mutation p.D12Y 0.39 deleterious(0) possibly_damaging(0.702) TCGA-CD-8531-01 8 32621289 32621289 C T NRG1 Missense_Mutation p.P436L 0.38 deleterious(0) probably_damaging(0.992) TCGA-CD-8531-01 8 35453072 35453072 A C UNC5D Missense_Mutation p.Y156S 0.38 deleterious(0.02) possibly_damaging(0.893) TCGA-CD-8531-01 8 56912001 56912001 C T LYN Missense_Mutation p.T410M 0.75 deleterious(0) probably_damaging(1) TCGA-CD-8531-01 8 72950287 72950287 A T TRPA1 Silent p.T772T 0.33 TCGA-CD-8531-01 8 91929744 91929744 G T NECAB1 Nonsense_Mutation p.E128* 0.39 TCGA-CD-8531-01 9 107380453 107380453 T A OR13C9 Missense_Mutation p.E11D 0.34 tolerated(0.06) probably_damaging(0.99) TCGA-CD-8531-01 9 125681733 125681733 G A ZBTB26 Nonsense_Mutation p.Q161* 0.51 TCGA-CD-8531-01 9 37745995 37745995 T G FRMPD1 Missense_Mutation p.N1322K 0.40 tolerated(0.94) benign(0.01) TCGA-CD-8531-01 9 38397141 38397141 G A ALDH1B1 Missense_Mutation p.G466R 0.44 deleterious(0) probably_damaging(1) TCGA-CD-8531-01 9 91996119 91996119 A T SEMA4D Missense_Mutation p.V530E 0.43 deleterious(0) possibly_damaging(0.833) TCGA-CD-8531-01 9 91996153 91996153 A G SEMA4D Missense_Mutation p.Y519H 0.38 deleterious(0.03) possibly_damaging(0.864) TCGA-CD-8531-01 X 102586597 102586597 A C TCEAL7 Missense_Mutation p.N89T 0.26 deleterious(0.03) possibly_damaging(0.635) TCGA-CD-8531-01 X 107147196 107147196 T G MID2 Silent p.T275T 0.28 TCGA-CD-8531-01 X 110489725 110489725 G A CAPN6 3'UTR 0.30 TCGA-CD-8531-01 X 123779095 123779095 G T TENM1 Missense_Mutation p.P592T 0.20 deleterious(0) possibly_damaging(0.874) TCGA-CD-8531-01 X 130218272 130218272 T C ARHGAP36 Silent p.F213F 0.25 TCGA-CD-8531-01 X 138286220 138286220 C T FGF13 Splice_Site p.X17_splice 0.21 TCGA-CD-8531-01 X 138642958 138642958 G T F9 Missense_Mutation p.W261L 0.39 deleterious(0) probably_damaging(1) TCGA-CD-8531-01 X 139038690 139038690 T A CXorf66 Missense_Mutation p.S151C 0.65 deleterious(0) benign(0.184) TCGA-CD-8531-01 X 140984913 140984913 G T MAGEC3 Missense_Mutation p.D457Y 0.71 deleterious(0.02) probably_damaging(0.998) TCGA-CD-8531-01 X 154194356 154194356 T C F8 Silent p.K444K 0.20 TCGA-CD-8531-01 X 30260943 30260943 G A MAGEB4 Missense_Mutation p.D231N 0.07 tolerated(0.13) possibly_damaging(0.896) TCGA-CD-8531-01 X 34148536 34148536 A G FAM47A Silent p.A620A 0.28 TCGA-CD-8531-01 X 37028756 37028756 G A FAM47C Missense_Mutation p.R758H 0.58 tolerated(0.11) benign(0.011) TCGA-CD-8531-01 X 48934088 48934088 C T WDR45 Splice_Site p.X147_splice 0.92 TCGA-CD-8531-01 X 66941680 66941680 G A AR Missense_Mutation p.R775H 0.30 deleterious(0) probably_damaging(0.996) TCGA-CD-8531-01 X 68749751 68749751 G C FAM155B Silent p.G457G 0.50 TCGA-CD-8531-01 X 69261763 69261763 G A AWAT2 Silent p.I299I 0.60 TCGA-CD-8531-01 X 69646220 69646220 G C GDPD2 Splice_Site p.X122_splice 0.36 TCGA-CD-8531-01 X 70465281 70465281 C A ZMYM3 Missense_Mutation p.G972V 0.15 deleterious(0.01) possibly_damaging(0.647) TCGA-CD-8531-01 X 71932636 71932636 G T PHKA1 Silent p.A74A 0.29 TCGA-CD-8531-01 X 73524221 73524221 C T ZCCHC13 Silent p.S40S 0.57 TCGA-CD-8531-01 X 76938019 76938019 T G ATRX Missense_Mutation p.K910T 0.27 benign(0.146) TCGA-CD-8531-01 X 79955467 79955467 T A BRWD3 Missense_Mutation p.M978L 0.56 tolerated(0.42) benign(0.006) TCGA-CD-8531-01 X 83129480 83129480 C T CYLC1 Silent p.F588F 0.29 TCGA-CD-8531-01 X 90691722 90691722 C A PABPC5 Nonsense_Mutation p.C382* 0.32 TCGA-CD-8531-01 X 91132325 91132325 T C PCDH11X Silent p.N362N 0.30 TCGA-CD-8531-01 X 91874057 91874057 T G PCDH11X 3'UTR 0.33 TCGA-CD-8532-01 10 48388390 48388390 C T RBP3 Missense_Mutation p.A830T 0.12 tolerated(0.35) possibly_damaging(0.798) TCGA-CD-8532-01 11 57381843 57381843 C A SERPING1 Missense_Mutation p.T431K 0.26 deleterious(0) probably_damaging(0.997) TCGA-CD-8532-01 11 78413143 78413143 G A TENM4 Silent p.L1505L 0.10 TCGA-CD-8532-01 12 22796905 22796905 T C ETNK1 Missense_Mutation p.I211T 0.20 tolerated(0.05) possibly_damaging(0.762) TCGA-CD-8532-01 12 53918448 53918448 T C ATF7 Missense_Mutation p.N342S 0.24 deleterious(0) probably_damaging(0.999) TCGA-CD-8532-01 14 51713861 51713861 C T TMX1 Silent p.D122D 0.20 TCGA-CD-8532-01 14 75361090 75361090 A G DLST Missense_Mutation p.T250A 0.23 deleterious(0) probably_damaging(0.999) TCGA-CD-8532-01 15 25423731 25423731 G A SNORD115-6 5'Flank 0.18 TCGA-CD-8532-01 15 65989678 65989678 T C DENND4A Silent p.E958E 0.15 TCGA-CD-8532-01 15 84611717 84611717 G A ADAMTSL3 Silent p.T791T 0.26 TCGA-CD-8532-01 16 84228960 84228960 C T ADAD2 Silent p.T346T 0.45 TCGA-CD-8532-01 17 36991365 36991365 G A C17orf98 3'UTR 0.24 TCGA-CD-8532-01 17 47783608 47783608 G A SLC35B1 Silent p.V99V 0.28 TCGA-CD-8532-01 18 44775267 44775267 C T SKOR2 Silent p.P96P 0.38 TCGA-CD-8532-01 19 37210533 37210533 C T ZNF567 Missense_Mutation p.H272Y 0.09 deleterious(0) probably_damaging(0.983) TCGA-CD-8532-01 19 42791342 42791346 CCCAG - CIC Frame_Shift_Del p.P135Rfs*7 0.29 TCGA-CD-8532-01 19 43242982 43242982 C T PSG3 Silent p.L108L 0.22 TCGA-CD-8532-01 19 47969473 47969473 G A SLC8A2 Missense_Mutation p.P63L 0.24 tolerated(0.59) probably_damaging(0.999) TCGA-CD-8532-01 19 53793270 53793270 G A BIRC8 Nonsense_Mutation p.R120* 0.21 TCGA-CD-8532-01 19 57089694 57089694 C T ZNF470 Missense_Mutation p.R633C 0.10 deleterious(0.02) benign(0.002) TCGA-CD-8532-01 19 58234635 58234635 C A ZNF671 Missense_Mutation p.R71I 0.04 deleterious(0) probably_damaging(0.973) TCGA-CD-8532-01 1 177245464 177245464 C A BRINP2 Silent p.T302T 0.20 TCGA-CD-8532-01 1 245866038 245866038 C T KIF26B 3'UTR 0.25 TCGA-CD-8532-01 20 34021881 34021881 C T GDF5 Silent p.T444T 0.36 TCGA-CD-8532-01 20 3541448 3541448 C T ATRN Missense_Mutation p.S448F 0.21 deleterious(0) probably_damaging(0.968) TCGA-CD-8532-01 21 31587979 31587979 C T CLDN8 Missense_Mutation p.V89M 0.24 deleterious(0.05) probably_damaging(0.984) TCGA-CD-8532-01 22 50878172 50878172 C T PPP6R2 Missense_Mutation p.T698M 0.27 tolerated(0.21) benign(0.027) TCGA-CD-8532-01 2 218999840 218999840 G A CXCR2 Missense_Mutation p.A106T 0.22 tolerated(0.26) benign(0.082) TCGA-CD-8532-01 2 37076928 37076928 G A STRN Missense_Mutation p.S701L 0.26 deleterious(0) possibly_damaging(0.804) TCGA-CD-8532-01 2 74042710 74042710 C T C2orf78 Missense_Mutation p.P454S 0.19 deleterious(0.03) benign(0.199) TCGA-CD-8532-01 3 100463762 100463762 T C TFG Silent p.G269G 0.19 TCGA-CD-8532-01 3 137484052 137484052 G T SOX14 Silent p.A142A 0.28 TCGA-CD-8532-01 3 184966304 184966304 T C EHHADH Missense_Mutation p.T26A 0.34 tolerated(0.87) benign(0.001) TCGA-CD-8532-01 3 28373891 28373891 T A AZI2 Missense_Mutation p.S206C 0.22 tolerated(0.05) benign(0.005) TCGA-CD-8532-01 3 63649696 63649696 C T SNTN Silent p.F123F 0.09 TCGA-CD-8532-01 3 63898494 63898494 G A ATXN7 Missense_Mutation p.A74T 0.15 deleterious(0.03) probably_damaging(0.953) TCGA-CD-8532-01 3 77526676 77526676 G A ROBO2 Nonsense_Mutation p.W183* 0.15 TCGA-CD-8532-01 4 130030829 130030829 T G C4orf33 Splice_Site p.X165_splice 0.22 TCGA-CD-8532-01 4 147724798 147724798 A T TTC29 Missense_Mutation p.F381I 0.33 deleterious(0.01) probably_damaging(0.979) TCGA-CD-8532-01 4 40824002 40824002 G A APBB2 Silent p.D666D 0.24 TCGA-CD-8532-01 4 48116415 48116415 G A TXK Silent p.N7N 0.38 TCGA-CD-8532-01 4 5578019 5578019 G C EVC2 Missense_Mutation p.L1074V 0.32 deleterious(0) probably_damaging(0.996) TCGA-CD-8532-01 5 159842306 159842306 A G SLU7 5'UTR 0.13 TCGA-CD-8532-01 6 136594263 136594263 T A BCLAF1 Missense_Mutation p.T639S 0.07 tolerated(0.16) possibly_damaging(0.486) TCGA-CD-8532-01 7 100350373 100350373 C T ZAN Missense_Mutation p.T882M 0.19 unknown(0) TCGA-CD-8532-01 7 119914783 119914783 C G KCND2 Missense_Mutation p.Q33E 0.19 tolerated(0.92) benign(0.001) TCGA-CD-8532-01 7 135079154 135079154 T C CNOT4 Silent p.V381V 0.21 TCGA-CD-8532-01 7 1535799 1535799 T C INTS1 Silent p.E568E 0.21 TCGA-CD-8532-01 8 55542840 55542840 T C RP1 Missense_Mutation p.L2133P 0.08 deleterious(0) possibly_damaging(0.695) TCGA-CD-8532-01 9 107571749 107571749 G A ABCA1 Silent p.I1424I 0.42 TCGA-CD-8532-01 X 114953493 114953494 - T RP1-241P17.4 Frame_Shift_Ins p.N19Kfs*15 0.35 TCGA-CD-8532-01 X 47272403 47272403 T A ZNF157 Missense_Mutation p.F311I 0.33 deleterious(0) probably_damaging(0.999) TCGA-CD-8532-01 X 53228037 53228038 - A KDM5C Frame_Shift_Ins p.M759Ifs*4 0.30 TCGA-CD-8533-01 10 102778901 102778901 G A PDZD7 Silent p.S334S 0.44 TCGA-CD-8533-01 10 120809415 120809415 T - EIF3A Frame_Shift_Del p.E853Kfs*320 0.28 TCGA-CD-8533-01 10 13523095 13523095 G A BEND7 Silent p.D237D 0.29 TCGA-CD-8533-01 10 17153024 17153024 G A CUBN Silent p.C303C 0.30 TCGA-CD-8533-01 10 51889630 51889630 G A FAM21A Missense_Mutation p.S1180N 0.20 deleterious(0.04) probably_damaging(0.944) TCGA-CD-8533-01 10 78713616 78713616 G A KCNMA1 Silent p.Y751Y 0.17 TCGA-CD-8533-01 11 101375501 101375501 G A TRPC6 Missense_Mutation p.R67W 0.26 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-CD-8533-01 11 116631587 116631587 T A BUD13 Missense_Mutation p.D373V 0.03 deleterious(0) probably_damaging(0.916) TCGA-CD-8533-01 11 122756551 122756551 T G C11orf63 5'UTR 0.22 TCGA-CD-8533-01 11 19259528 19259528 G A E2F8 Missense_Mutation p.P56L 0.03 deleterious(0) probably_damaging(1) TCGA-CD-8533-01 11 47445614 47445614 C T PSMC3 Missense_Mutation p.D192N 0.27 deleterious(0.02) probably_damaging(0.939) TCGA-CD-8533-01 11 47600845 47600847 TGC - NDUFS3 In_Frame_Del p.L32del 0.29 TCGA-CD-8533-01 11 61548671 61548671 C T MYRF Silent p.S878S 0.25 TCGA-CD-8533-01 11 66191453 66191453 C T NPAS4 Silent p.T364T 0.20 TCGA-CD-8533-01 11 94602562 94602562 C T AMOTL1 Silent p.R896R 0.25 TCGA-CD-8533-01 12 101442178 101442178 G C ANO4 Missense_Mutation p.W402C 0.19 deleterious(0) probably_damaging(1) TCGA-CD-8533-01 12 126135433 126135433 G A TMEM132B Silent p.P611P 0.22 TCGA-CD-8533-01 12 132400462 132400462 C T ULK1 Missense_Mutation p.R546C 0.30 deleterious(0.01) possibly_damaging(0.513) TCGA-CD-8533-01 12 15699483 15699483 A T PTPRO Intron 0.20 TCGA-CD-8533-01 12 22487055 22487055 C T ST8SIA1 Missense_Mutation p.V38M 0.27 tolerated(0.07) benign(0.154) TCGA-CD-8533-01 12 45444627 45444627 C T DBX2 Silent p.A28A 0.19 TCGA-CD-8533-01 12 53345379 53345379 G A KRT18 Missense_Mutation p.E258K 0.28 tolerated(0.73) benign(0.02) TCGA-CD-8533-01 12 57906632 57906632 C T MARS Missense_Mutation p.R618C 0.47 deleterious(0) probably_damaging(1) TCGA-CD-8533-01 12 9345130 9345130 G A PZP Missense_Mutation p.S487L 0.16 deleterious(0) benign(0.071) TCGA-CD-8533-01 13 95034748 95034748 C T GPC6 Silent p.S411S 0.09 TCGA-CD-8533-01 14 103806119 103806119 C T EIF5 Silent p.V350V 0.07 TCGA-CD-8533-01 14 24033856 24033856 G A AP1G2 Missense_Mutation p.T279M 0.16 deleterious(0) probably_damaging(1) TCGA-CD-8533-01 14 42356678 42356678 T A LRFN5 Missense_Mutation p.C284S 0.20 deleterious(0) probably_damaging(0.999) TCGA-CD-8533-01 14 63483640 63483640 C T KCNH5 Missense_Mutation p.V36M 0.26 deleterious(0.03) possibly_damaging(0.875) TCGA-CD-8533-01 14 77709373 77709373 G A TMEM63C Missense_Mutation p.V439I 0.57 deleterious(0.01) probably_damaging(0.999) TCGA-CD-8533-01 15 20710683 20710683 C T HERC2P3 RNA 0.15 TCGA-CD-8533-01 15 26026198 26026198 G A ATP10A Missense_Mutation p.R208W 0.27 deleterious(0) possibly_damaging(0.892) TCGA-CD-8533-01 15 40949646 40949646 A G CASC5 Missense_Mutation p.M2256V 0.23 deleterious(0.04) benign(0.058) TCGA-CD-8533-01 15 44028982 44028982 C T RNU6-354P 5'Flank 0.33 TCGA-CD-8533-01 15 45387645 45387645 A G DUOX2 Missense_Mutation p.L1410P 0.28 tolerated(0.36) possibly_damaging(0.903) TCGA-CD-8533-01 15 65688196 65688196 C T IGDCC4 Missense_Mutation p.V435I 0.33 tolerated(0.3) possibly_damaging(0.824) TCGA-CD-8533-01 15 66857601 66857601 C T LCTL Missense_Mutation p.G35R 0.17 deleterious(0) probably_damaging(1) TCGA-CD-8533-01 15 69677202 69677202 C T PAQR5 Silent p.A122A 0.22 TCGA-CD-8533-01 15 72636338 72636338 C T HEXA 3'UTR 0.32 TCGA-CD-8533-01 15 79749511 79749511 G A KIAA1024 Missense_Mutation p.G341E 0.21 deleterious(0) probably_damaging(1) TCGA-CD-8533-01 16 30505536 30505536 A G ITGAL Missense_Mutation p.Y406C 0.20 deleterious(0) probably_damaging(0.999) TCGA-CD-8533-01 16 53404695 53404695 T G RP11-44F14.1 RNA 0.24 TCGA-CD-8533-01 16 70176523 70176523 A G PDPR Silent p.E513E 0.15 TCGA-CD-8533-01 16 71127826 71127826 C T HYDIN Missense_Mutation p.R447H 0.25 possibly_damaging(0.865) TCGA-CD-8533-01 16 74502858 74502858 C - GLG1 Frame_Shift_Del p.E808Rfs*5 0.18 TCGA-CD-8533-01 17 10535852 10535852 C T MYH3 Missense_Mutation p.A1633T 0.31 deleterious(0.02) possibly_damaging(0.456) TCGA-CD-8533-01 17 40278857 40278857 C T RAB5C Missense_Mutation p.A184T 0.40 tolerated(0.19) benign(0.008) TCGA-CD-8533-01 17 40948262 40948262 C T WNK4 Missense_Mutation p.R1185C 0.40 deleterious(0) probably_damaging(0.998) TCGA-CD-8533-01 17 41179268 41179268 G A RND2 Missense_Mutation p.D87N 0.25 deleterious(0.01) probably_damaging(0.967) TCGA-CD-8533-01 17 7578235 7578235 T C TP53 Missense_Mutation p.Y205C 0.75 deleterious(0) probably_damaging(0.99) TCGA-CD-8533-01 17 80231183 80231183 G A CSNK1D Silent p.L25L 0.80 TCGA-CD-8533-01 18 61260156 61260156 C T SERPINB13 Silent p.A141A 0.24 TCGA-CD-8533-01 19 15072947 15072947 C T SLC1A6 Missense_Mutation p.A268T 0.26 deleterious(0.02) probably_damaging(0.994) TCGA-CD-8533-01 19 17038952 17038952 G A CPAMD8 Silent p.T1126T 0.28 TCGA-CD-8533-01 19 41808848 41808848 C T HNRNPUL1 Nonsense_Mutation p.R656* 0.06 TCGA-CD-8533-01 19 46119147 46119147 C A EML2 Missense_Mutation p.G705C 0.13 deleterious(0) probably_damaging(0.999) TCGA-CD-8533-01 19 4685716 4685716 G A DPP9 Silent p.Y651Y 0.35 TCGA-CD-8533-01 19 48525434 48525434 C T ELSPBP1 Silent p.S174S 0.26 TCGA-CD-8533-01 19 48863423 48863423 G A TMEM143 Missense_Mutation p.S92L 0.44 tolerated(0.47) unknown(0) TCGA-CD-8533-01 19 49548564 49548564 C G CGB5 3'UTR 0.50 TCGA-CD-8533-01 19 52887688 52887688 T A ZNF880 Missense_Mutation p.N285K 0.64 tolerated(0.93) benign(0.179) TCGA-CD-8533-01 1 111494912 111494912 C T LRIF1 Silent p.A198A 0.23 TCGA-CD-8533-01 1 111996865 111996865 G A ATP5F1 Missense_Mutation p.G37E 0.05 tolerated(0.42) benign(0.016) TCGA-CD-8533-01 1 152282997 152282997 G A FLG Silent p.H1455H 0.19 TCGA-CD-8533-01 1 153615503 153615503 C T CHTOP Intron 0.38 TCGA-CD-8533-01 1 158517539 158517539 A T OR6Y1 Silent p.L119L 0.06 TCGA-CD-8533-01 1 175293536 175293536 G T TNR Silent p.R1305R 0.16 TCGA-CD-8533-01 1 205884241 205884251 GGGTGAAGAGT - SLC26A9 Frame_Shift_Del p.L812Sfs*25 0.16 TCGA-CD-8533-01 1 210004191 210004191 G C DIEXF Missense_Mutation p.S64T 0.16 tolerated(0.43) benign(0.005) TCGA-CD-8533-01 1 2121026 2121026 T C C1orf86 3'UTR 0.54 TCGA-CD-8533-01 1 226252104 226252104 A G H3F3A Missense_Mutation p.R18G 0.41 deleterious_low_confidence(0.02) benign(0.276) TCGA-CD-8533-01 1 229438703 229438703 C T RAB4A Silent p.N212N 0.21 TCGA-CD-8533-01 1 232650081 232650081 C G SIPA1L2 Missense_Mutation p.Q335H 0.42 deleterious(0) probably_damaging(0.998) TCGA-CD-8533-01 1 237711767 237711767 G A RYR2 Missense_Mutation p.M981I 0.14 benign(0.009) TCGA-CD-8533-01 1 31188993 31188993 G A MATN1 Missense_Mutation p.R324C 0.41 deleterious(0) probably_damaging(0.977) TCGA-CD-8533-01 1 34180219 34180219 C T CSMD2 Missense_Mutation p.R1085H 0.35 tolerated(0.06) possibly_damaging(0.646) TCGA-CD-8533-01 1 57257869 57257869 A G C1orf168 Missense_Mutation p.L206S 0.28 tolerated(0.77) benign(0.007) TCGA-CD-8533-01 1 67591508 67591508 G A C1orf141 Missense_Mutation p.L54F 0.26 tolerated(0.12) benign(0.021) TCGA-CD-8533-01 1 68512429 68512429 G A DIRAS3 Silent p.T184T 0.22 TCGA-CD-8533-01 20 1532406 1532406 C T SIRPD Missense_Mutation p.V118M 0.14 deleterious(0.01) possibly_damaging(0.826) TCGA-CD-8533-01 20 2298062 2298062 G A TGM3 Missense_Mutation p.R305Q 0.12 tolerated(0.6) benign(0.024) TCGA-CD-8533-01 20 25456683 25456683 C T NINL Missense_Mutation p.D1082N 0.13 tolerated(0.53) benign(0.002) TCGA-CD-8533-01 20 42343870 42343870 G A MYBL2 Missense_Mutation p.E641K 0.13 tolerated(0.28) benign(0.194) TCGA-CD-8533-01 20 57767405 57767405 C T ZNF831 Missense_Mutation p.T444M 0.13 tolerated(1) benign(0.003) TCGA-CD-8533-01 21 15746181 15746181 T C HSPA13 Silent p.E391E 0.20 TCGA-CD-8533-01 22 16267071 16267071 C T POTEH Missense_Mutation p.G460R 0.04 tolerated(0.25) benign(0.066) TCGA-CD-8533-01 22 19839351 19839351 C T C22orf29 Missense_Mutation p.R145H 0.30 tolerated(0.45) benign(0.005) TCGA-CD-8533-01 2 141607716 141607716 G A LRP1B Nonsense_Mutation p.R1632* 0.22 TCGA-CD-8533-01 2 152348933 152348933 G A NEB Missense_Mutation p.R8281W 0.23 probably_damaging(1) TCGA-CD-8533-01 2 160994710 160994710 C A ITGB6 Nonsense_Mutation p.E370* 0.32 TCGA-CD-8533-01 2 171902756 171902756 G A TLK1 Missense_Mutation p.P366L 0.25 tolerated(0.1) benign(0.142) TCGA-CD-8533-01 2 179428276 179428276 C T TTN Missense_Mutation p.R27528Q 0.25 TCGA-CD-8533-01 2 180348116 180348116 C T ZNF385B Missense_Mutation p.V185I 0.14 deleterious(0.03) benign(0.018) TCGA-CD-8533-01 2 183860435 183860435 G A NCKAP1 Silent p.S251S 0.28 TCGA-CD-8533-01 2 219324515 219324515 C A USP37 Nonsense_Mutation p.E881* 0.41 TCGA-CD-8533-01 2 220290450 220290450 G A DES Missense_Mutation p.E452K 0.12 deleterious(0) probably_damaging(0.962) TCGA-CD-8533-01 2 44065004 44065004 G A ABCG5 Silent p.S78S 0.15 TCGA-CD-8533-01 2 61415499 61415499 G T USP34 Missense_Mutation p.T3460N 0.34 tolerated_low_confidence(0.6) benign(0) TCGA-CD-8533-01 2 71360098 71360098 G A MPHOSPH10 Missense_Mutation p.E54K 0.30 tolerated(0.2) benign(0.219) TCGA-CD-8533-01 2 9475294 9475294 G A ASAP2 Missense_Mutation p.V279I 0.33 tolerated(0.07) benign(0.366) TCGA-CD-8533-01 3 119135142 119135142 A C ARHGAP31 3'UTR 0.34 TCGA-CD-8533-01 3 37379168 37379168 A G GOLGA4 Silent p.A2128A 0.24 TCGA-CD-8533-01 3 41860979 41860979 G C ULK4 Missense_Mutation p.P595R 0.39 deleterious(0.01) possibly_damaging(0.463) TCGA-CD-8533-01 3 78766527 78766527 G T ROBO1 Missense_Mutation p.A272E 0.05 deleterious(0) probably_damaging(0.918) TCGA-CD-8533-01 4 147824735 147824735 C T TTC29 Missense_Mutation p.E183K 0.17 deleterious(0.02) probably_damaging(0.972) TCGA-CD-8533-01 4 189012857 189012857 C T TRIML2 Silent p.K278K 0.30 TCGA-CD-8533-01 4 46066506 46066506 G A GABRG1 Missense_Mutation p.H193Y 0.25 tolerated(1) possibly_damaging(0.808) TCGA-CD-8533-01 4 74853296 74853296 G A PPBP Silent p.P74P 0.36 TCGA-CD-8533-01 4 860839 860839 G A GAK Missense_Mutation p.P926L 0.44 tolerated(0.27) benign(0.029) TCGA-CD-8533-01 4 88583812 88583812 C A DMP1 Missense_Mutation p.D294E 0.29 deleterious(0.04) benign(0.284) TCGA-CD-8533-01 5 10264902 10264902 T G CCT5 3'UTR 0.22 TCGA-CD-8533-01 5 112868582 112868582 C T YTHDC2 Nonsense_Mutation p.Q228* 0.30 TCGA-CD-8533-01 5 120021685 120021685 C A PRR16 Missense_Mutation p.Q43K 0.33 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-CD-8533-01 5 127686616 127686616 T G FBN2 Missense_Mutation p.E919A 0.10 deleterious(0.02) benign(0.129) TCGA-CD-8533-01 5 140729825 140729825 G T PCDHGA2 Intron 0.10 TCGA-CD-8533-01 5 173491317 173491317 C T NSG2 Missense_Mutation p.T71M 0.28 tolerated(0.06) probably_damaging(0.959) TCGA-CD-8533-01 5 36049480 36049480 C T UGT3A2 Silent p.A118A 0.16 TCGA-CD-8533-01 5 82850854 82850854 A G VCAN Silent p.T3244T 0.33 TCGA-CD-8533-01 6 123369783 123369783 G A CLVS2 Missense_Mutation p.R194Q 0.40 deleterious(0.01) probably_damaging(0.935) TCGA-CD-8533-01 6 144508430 144508430 C T STX11 Silent p.R222R 0.10 TCGA-CD-8533-01 6 27806093 27806093 C A HIST1H2AK Missense_Mutation p.G9C 0.17 deleterious_low_confidence(0) unknown(0) TCGA-CD-8533-01 6 30569423 30569423 C T PPP1R10 Missense_Mutation p.R909H 0.52 deleterious_low_confidence(0.04) unknown(0) TCGA-CD-8533-01 6 30861167 30861167 C G DDR1 Silent p.L438L 0.24 TCGA-CD-8533-01 6 30899922 30899922 C T SFTA2 5'UTR 0.37 TCGA-CD-8533-01 6 31736828 31736828 C T VWA7 Silent p.V490V 0.15 TCGA-CD-8533-01 6 32053689 32053689 G A TNXB Missense_Mutation p.R996W 0.23 probably_damaging(0.996) TCGA-CD-8533-01 6 43418488 43418488 C T DLK2 Missense_Mutation p.G314E 0.22 deleterious(0) probably_damaging(0.999) TCGA-CD-8533-01 6 44268141 44268141 C T AARS2 3'UTR 0.30 TCGA-CD-8533-01 6 88853594 88853594 G A CNR1 Missense_Mutation p.T467M 0.24 deleterious(0.01) probably_damaging(0.947) TCGA-CD-8533-01 6 88855024 88855024 A G CNR1 5'UTR 0.32 TCGA-CD-8533-01 6 99858715 99858715 C A PNISR Missense_Mutation p.A135S 0.33 tolerated(0.25) benign(0.292) TCGA-CD-8533-01 7 141619040 141619040 G A OR9A4 Missense_Mutation p.R122H 0.28 deleterious(0.03) benign(0.117) TCGA-CD-8533-01 7 144015544 144015544 C T OR2A1 Silent p.S109S 0.13 TCGA-CD-8533-01 7 1478596 1478596 C - MICALL2 Frame_Shift_Del p.A668Pfs*57 0.40 TCGA-CD-8533-01 7 43351432 43351432 G A HECW1 Missense_Mutation p.R33H 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.901) TCGA-CD-8533-01 7 44555794 44555794 C T NPC1L1 Silent p.A1201A 0.52 TCGA-CD-8533-01 7 4856077 4856077 G A RADIL Missense_Mutation p.P583L 0.38 deleterious(0) probably_damaging(0.988) TCGA-CD-8533-01 7 5410958 5410958 C T TNRC18 Silent p.P1089P 0.13 TCGA-CD-8533-01 7 87564471 87564471 G A ADAM22 Silent p.T72T 0.24 TCGA-CD-8533-01 7 96651486 96651486 G A DLX5 Intron 0.22 TCGA-CD-8533-01 8 100523457 100523458 - AAG VPS13B In_Frame_Ins p.K1476dup 0.57 TCGA-CD-8533-01 8 124710691 124710691 T C ANXA13 Missense_Mutation p.M140V 0.16 tolerated(0.1) benign(0.025) TCGA-CD-8533-01 8 145619684 145619684 G A CPSF1 Silent p.V1218V 0.28 TCGA-CD-8533-01 8 146033573 146033573 C T ZNF517 Silent p.F424F 0.18 TCGA-CD-8533-01 8 17419560 17419560 G A SLC7A2 Missense_Mutation p.V578I 0.64 tolerated(0.92) benign(0.002) TCGA-CD-8533-01 8 49647807 49647807 C T EFCAB1 5'Flank 0.25 TCGA-CD-8533-01 8 69002817 69002817 C G PREX2 Missense_Mutation p.T706S 0.28 tolerated(1) possibly_damaging(0.484) TCGA-CD-8533-01 8 97157137 97157137 C A GDF6 Missense_Mutation p.R341L 0.36 deleterious(0) possibly_damaging(0.885) TCGA-CD-8533-01 9 102590396 102590396 G A NR4A3 Silent p.S35S 0.13 TCGA-CD-8533-01 9 104171731 104171752 ATACACACAGGAGAGAAACCTT - ZNF189 Frame_Shift_Del p.H562Sfs*25 0.36 TCGA-CD-8533-01 9 120053646 120053646 T G ASTN2 Missense_Mutation p.I197L 0.43 tolerated_low_confidence(0.31) benign(0.068) TCGA-CD-8533-01 9 123253728 123253728 G A CDK5RAP2 Missense_Mutation p.R447C 0.20 deleterious(0.05) possibly_damaging(0.689) TCGA-CD-8533-01 9 88624844 88624844 C T NAA35 Missense_Mutation p.R430W 0.04 deleterious(0) probably_damaging(0.973) TCGA-CD-8533-01 X 106069407 106069407 T A TBC1D8B Missense_Mutation p.N325K 0.38 deleterious(0) possibly_damaging(0.771) TCGA-CD-8533-01 X 107403858 107403858 C T COL4A6 Missense_Mutation p.G1455R 0.40 probably_damaging(1) TCGA-CD-8533-01 X 123540199 123540199 G A TENM1 Missense_Mutation p.T1708M 0.41 tolerated(0.1) benign(0.223) TCGA-CD-8533-01 X 125299289 125299289 C T DCAF12L2 Missense_Mutation p.V207I 0.43 deleterious(0.04) possibly_damaging(0.812) TCGA-CD-8533-01 X 139586543 139586543 C T SOX3 Missense_Mutation p.G228D 0.39 deleterious(0) probably_damaging(0.998) TCGA-CD-8533-01 X 1413315 1413315 G A CSF2RA Silent p.S247S 0.21 TCGA-CD-8533-01 X 1546729 1546729 C T ASMTL Silent p.A265A 0.22 TCGA-CD-8533-01 X 55290256 55290256 C T PAGE3 Silent p.V27V 0.39 TCGA-CD-8533-01 Y 4925488 4925488 C T PCDH11Y Silent p.Y208Y 0.35 TCGA-CD-8534-01 10 116061162 116061162 C T AFAP1L2 Missense_Mutation p.R498H 0.05 tolerated(0.15) benign(0.002) TCGA-CD-8534-01 10 64958456 64958456 T C JMJD1C Missense_Mutation p.I1770V 0.29 tolerated(0.64) probably_damaging(0.992) TCGA-CD-8534-01 10 91066746 91066746 G A IFIT2 Missense_Mutation p.A345T 0.33 deleterious(0.05) benign(0.231) TCGA-CD-8534-01 11 102575437 102575437 G A MMP27 Missense_Mutation p.L58F 0.21 tolerated(0.71) benign(0.015) TCGA-CD-8534-01 11 108205742 108205742 T G ATM Missense_Mutation p.F2686C 0.58 deleterious(0) probably_damaging(0.997) TCGA-CD-8534-01 11 57100226 57100226 T C SSRP1 Missense_Mutation p.Y214C 0.13 deleterious(0) probably_damaging(1) TCGA-CD-8534-01 11 61076454 61076454 C T DDB1 Splice_Site p.X887_splice 0.05 TCGA-CD-8534-01 11 66360392 66360392 G A CCDC87 Missense_Mutation p.P32L 0.61 deleterious(0.04) benign(0.154) TCGA-CD-8534-01 12 101603479 101603479 G A SLC5A8 Missense_Mutation p.R50C 0.15 deleterious(0) probably_damaging(0.999) TCGA-CD-8534-01 12 112528652 112528652 C A NAA25 Missense_Mutation p.G54V 0.24 deleterious(0.01) probably_damaging(0.985) TCGA-CD-8534-01 12 121659754 121659754 C T P2RX4 Silent p.L123L 0.04 TCGA-CD-8534-01 12 427605 427605 T A KDM5A Missense_Mutation p.E855V 0.32 tolerated(0.06) benign(0.117) TCGA-CD-8534-01 12 48105513 48105513 C T ENDOU Missense_Mutation p.G340S 0.28 tolerated(0.16) probably_damaging(0.993) TCGA-CD-8534-01 12 4920527 4920527 G A KCNA6 Silent p.S440S 0.29 TCGA-CD-8534-01 12 55715045 55715045 G A OR6C1 Missense_Mutation p.R221K 0.17 tolerated_low_confidence(0.46) benign(0.03) TCGA-CD-8534-01 12 6948180 6948180 G A LEPREL2 Missense_Mutation p.R640H 0.25 deleterious(0.02) possibly_damaging(0.886) TCGA-CD-8534-01 13 79911413 79911413 A G RBM26 Missense_Mutation p.S826P 0.04 tolerated(0.34) benign(0.006) TCGA-CD-8534-01 14 50206898 50206898 A G KLHDC1 Missense_Mutation p.T327A 0.29 tolerated(0.44) benign(0.257) TCGA-CD-8534-01 15 75137840 75137840 C T SCAMP2 Missense_Mutation p.V277M 0.29 deleterious(0) possibly_damaging(0.861) TCGA-CD-8534-01 15 77906417 77906417 G A LINGO1 Missense_Mutation p.A611V 0.30 deleterious(0.01) benign(0.217) TCGA-CD-8534-01 15 90610422 90610422 C T ZNF710 Missense_Mutation p.S18F 0.22 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-CD-8534-01 15 92977597 92977597 G A ST8SIA2 Silent p.L94L 0.18 TCGA-CD-8534-01 16 15718973 15718973 G A KIAA0430 Missense_Mutation p.H671Y 0.27 deleterious(0.04) benign(0.138) TCGA-CD-8534-01 17 2966002 2966002 C T OR1D5 Silent p.P300P 0.31 TCGA-CD-8534-01 17 32961845 32961845 T G TMEM132E Missense_Mutation p.D482E 0.17 tolerated(0.97) benign(0.034) TCGA-CD-8534-01 17 42287592 42287592 A G UBTF Missense_Mutation p.V509A 0.33 tolerated(0.8) benign(0.002) TCGA-CD-8534-01 19 14952341 14952341 C T OR7A10 Missense_Mutation p.V117M 0.26 deleterious_low_confidence(0.02) benign(0.045) TCGA-CD-8534-01 19 36884862 36884862 A G ZFP82 Missense_Mutation p.I127T 0.05 tolerated(0.06) benign(0.01) TCGA-CD-8534-01 19 38861176 38861176 G C CATSPERG Missense_Mutation p.S1075T 0.34 tolerated(0.13) benign(0.294) TCGA-CD-8534-01 19 41063215 41063215 G A SPTBN4 Missense_Mutation p.R1859H 0.05 deleterious(0.02) benign(0.073) TCGA-CD-8534-01 19 51983739 51983739 G A CEACAM18 Missense_Mutation p.A130T 0.23 tolerated(0.58) benign(0.035) TCGA-CD-8534-01 19 52196146 52196146 G A SPACA6P-AS RNA 0.26 TCGA-CD-8534-01 19 55877404 55877404 C T IL11 Missense_Mutation p.G191R 0.29 deleterious(0.03) probably_damaging(0.999) TCGA-CD-8534-01 19 58601554 58601554 G A ZSCAN18 Silent p.A83A 0.46 TCGA-CD-8534-01 1 151110229 151110229 G T SEMA6C Missense_Mutation p.F238L 0.11 deleterious(0.02) benign(0.305) TCGA-CD-8534-01 1 156696911 156696911 C T ISG20L2 Silent p.K178K 0.31 TCGA-CD-8534-01 1 161023088 161023088 G A ARHGAP30 Silent p.L208L 0.31 TCGA-CD-8534-01 1 16260713 16260713 G A SPEN Missense_Mutation p.V2660I 0.07 probably_damaging(0.987) TCGA-CD-8534-01 1 179631422 179631422 G T TDRD5 Splice_Site p.X835_splice 0.14 TCGA-CD-8534-01 1 200969033 200969033 G A KIF21B Missense_Mutation p.T582M 0.26 tolerated(0.1) possibly_damaging(0.65) TCGA-CD-8534-01 1 237617837 237617837 G T RYR2 Missense_Mutation p.R480L 0.18 possibly_damaging(0.719) TCGA-CD-8534-01 1 237765353 237765353 C T RYR2 Missense_Mutation p.A1542V 0.10 probably_damaging(1) TCGA-CD-8534-01 1 32660744 32660744 C T TXLNA Missense_Mutation p.T530I 0.18 tolerated(0.13) benign(0.002) TCGA-CD-8534-01 1 6712953 6712953 C A DNAJC11 Missense_Mutation p.G189V 0.32 deleterious(0) probably_damaging(0.985) TCGA-CD-8534-01 22 23437849 23437849 C T GNAZ 5'UTR 0.13 TCGA-CD-8534-01 2 128244161 128244161 G A IWS1 Missense_Mutation p.P766S 0.07 deleterious(0) probably_damaging(1) TCGA-CD-8534-01 2 220164444 220164444 A G PTPRN Missense_Mutation p.S501P 0.31 tolerated(0.1) benign(0.12) TCGA-CD-8534-01 2 33589405 33589405 C T LTBP1 Nonsense_Mutation p.R1508* 0.38 TCGA-CD-8534-01 2 71591185 71591185 G A ZNF638 Missense_Mutation p.R507Q 0.35 deleterious(0.01) probably_damaging(0.997) TCGA-CD-8534-01 3 151155062 151155062 G C IGSF10 Silent p.G2429G 0.26 TCGA-CD-8534-01 3 439943 439943 T A CHL1 Missense_Mutation p.L1043H 0.25 tolerated(0.55) benign(0.012) TCGA-CD-8534-01 3 53757546 53757546 C T CACNA1D Silent p.V604V 0.30 TCGA-CD-8534-01 4 6325201 6325201 C T PPP2R2C Missense_Mutation p.R391Q 0.37 tolerated(0.07) benign(0.183) TCGA-CD-8534-01 4 95220581 95220581 A T HPGDS 3'UTR 0.09 TCGA-CD-8534-01 5 16671582 16671582 G A MYO10 Silent p.D1793D 0.08 TCGA-CD-8534-01 5 66430464 66430464 C T MAST4 Silent p.C780C 0.07 TCGA-CD-8534-01 6 116442355 116442355 T G COL10A1 Silent p.G308G 0.06 TCGA-CD-8534-01 6 152711422 152711422 C T SYNE1 Missense_Mutation p.A2724T 0.23 benign(0.003) TCGA-CD-8534-01 6 37440259 37440259 T C CMTR1 Missense_Mutation p.I562T 0.05 tolerated(0.41) benign(0.003) TCGA-CD-8534-01 6 47675062 47675062 G A GPR115 Silent p.K27K 0.24 TCGA-CD-8534-01 7 100489999 100489999 G A ACHE Silent p.F503F 0.09 TCGA-CD-8534-01 7 143001838 143001838 C T CASP2 Missense_Mutation p.R397W 0.06 deleterious(0.01) possibly_damaging(0.901) TCGA-CD-8534-01 8 113318352 113318352 G A CSMD3 Missense_Mutation p.T2652M 0.22 deleterious(0) probably_damaging(0.996) TCGA-CD-8534-01 8 51617181 51617181 C T SNTG1 Missense_Mutation p.R354W 0.23 deleterious(0.02) benign(0.099) TCGA-CD-8534-01 8 61693580 61693580 C G CHD7 Missense_Mutation p.L563V 0.16 benign(0.364) TCGA-CD-8534-01 8 70515860 70515861 - T SULF1 Frame_Shift_Ins p.W407Lfs*3 0.25 TCGA-CD-8534-01 8 94717228 94717228 G A FAM92A1 Missense_Mutation p.R141Q 0.36 tolerated(0.1) possibly_damaging(0.74) TCGA-CD-8534-01 9 1056234 1056234 C T DMRT2 Missense_Mutation p.A216V 0.36 deleterious(0.01) benign(0.173) TCGA-CD-8534-01 9 138516139 138516139 G T GLT6D1 Missense_Mutation p.P212Q 0.27 tolerated(0.27) possibly_damaging(0.462) TCGA-CD-8534-01 9 19380091 19380091 G A RPS6 Intron 0.09 TCGA-CD-8534-01 9 93375892 93375892 C T DIRAS2 Missense_Mutation p.R73Q 0.25 deleterious(0.03) probably_damaging(1) TCGA-CD-8534-01 X 153631879 153631879 G A DNASE1L1 Silent p.F132F 0.55 TCGA-CD-8534-01 X 44942724 44942724 G A KDM6A Missense_Mutation p.E1102K 0.15 deleterious(0) possibly_damaging(0.721) TCGA-CD-8535-01 10 124594423 124594423 T A CUZD1 Missense_Mutation p.N394I 0.32 deleterious(0) probably_damaging(0.998) TCGA-CD-8535-01 10 23481522 23481522 C T PTF1A Silent p.F21F 0.23 TCGA-CD-8535-01 10 25888082 25888082 T G GPR158 Missense_Mutation p.F1176C 0.38 deleterious(0.04) possibly_damaging(0.711) TCGA-CD-8535-01 10 26432425 26432425 G A MYO3A Missense_Mutation p.D771N 0.30 deleterious(0.02) probably_damaging(0.951) TCGA-CD-8535-01 10 61832206 61832206 T G ANK3 Missense_Mutation p.K2811N 0.34 benign(0.017) TCGA-CD-8535-01 10 61834976 61834976 T G ANK3 Missense_Mutation p.K1888T 0.33 benign(0.143) TCGA-CD-8535-01 10 64974609 64974609 C T JMJD1C Missense_Mutation p.D440N 0.27 tolerated_low_confidence(0.24) benign(0.003) TCGA-CD-8535-01 10 7618705 7618705 T G ITIH5 Silent p.G563G 0.45 TCGA-CD-8535-01 10 888940 888940 G A LARP4B Missense_Mutation p.T193M 0.26 deleterious(0.01) possibly_damaging(0.875) TCGA-CD-8535-01 11 100999459 100999459 A G PGR Silent p.L115L 0.17 TCGA-CD-8535-01 11 103908222 103908222 A G DDI1 Silent p.E224E 0.34 TCGA-CD-8535-01 11 110126036 110126036 T G RDX Missense_Mutation p.K258T 0.16 deleterious(0) probably_damaging(0.988) TCGA-CD-8535-01 11 113934258 113934258 C G ZBTB16 Missense_Mutation p.T79S 0.13 deleterious(0) probably_damaging(0.998) TCGA-CD-8535-01 11 118509945 118509945 G A PHLDB1 Silent p.P904P 0.20 TCGA-CD-8535-01 11 123477446 123477446 T G GRAMD1B Missense_Mutation p.F342V 0.28 tolerated(0.25) benign(0.098) TCGA-CD-8535-01 11 123676403 123676403 T G OR6M1 Missense_Mutation p.I219L 0.24 tolerated(0.13) benign(0.015) TCGA-CD-8535-01 11 123900377 123900377 C T OR10G8 Silent p.P16P 0.23 TCGA-CD-8535-01 11 132016335 132016335 C T NTM Silent p.D109D 0.61 TCGA-CD-8535-01 11 134121176 134121176 T G THYN1 Missense_Mutation p.K24Q 0.23 tolerated(0.12) benign(0.014) TCGA-CD-8535-01 11 31086653 31086653 T G DCDC1 Missense_Mutation p.Q782H 0.20 deleterious(0.04) possibly_damaging(0.862) TCGA-CD-8535-01 11 4790367 4790367 A G OR51F1 Missense_Mutation p.S261P 0.30 deleterious(0) probably_damaging(0.997) TCGA-CD-8535-01 11 48511002 48511002 T G OR4A47 Missense_Mutation p.L220V 0.30 deleterious_low_confidence(0) possibly_damaging(0.861) TCGA-CD-8535-01 11 4869842 4869842 T C OR51S1 Silent p.E199E 0.28 TCGA-CD-8535-01 11 4945136 4945136 T A OR51G1 Missense_Mutation p.K145M 0.28 deleterious(0.01) possibly_damaging(0.617) TCGA-CD-8535-01 11 4967541 4967541 G A OR51A4 Missense_Mutation p.R264C 0.09 deleterious(0.02) benign(0.431) TCGA-CD-8535-01 11 51412307 51412307 A T OR4A5 Nonsense_Mutation p.L30* 0.28 TCGA-CD-8535-01 11 55406423 55406423 T G OR4P4 Missense_Mutation p.V197G 0.45 deleterious(0) probably_damaging(0.958) TCGA-CD-8535-01 11 55563048 55563048 G T OR5D14 Missense_Mutation p.R6M 0.32 deleterious(0.02) benign(0.059) TCGA-CD-8535-01 11 5565929 5565929 A T OR52H1 Missense_Mutation p.N275K 0.29 tolerated(0.07) possibly_damaging(0.7) TCGA-CD-8535-01 11 55904446 55904446 A C OR8J3 Missense_Mutation p.V250G 0.26 deleterious(0) probably_damaging(0.918) TCGA-CD-8535-01 11 56113874 56113874 T G OR8K1 Missense_Mutation p.I120M 0.26 deleterious_low_confidence(0.05) possibly_damaging(0.547) TCGA-CD-8535-01 11 57114108 57114108 C T P2RX3 Silent p.Y70Y 0.26 TCGA-CD-8535-01 11 61729795 61729795 T C BEST1 Missense_Mutation p.I330T 0.07 deleterious(0.02) possibly_damaging(0.642) TCGA-CD-8535-01 11 62287621 62287621 G A AHNAK Silent p.D4756D 0.29 TCGA-CD-8535-01 11 64109148 64109148 G A CCDC88B Silent p.E203E 0.12 TCGA-CD-8535-01 11 64564487 64564487 G C MAP4K2 Silent p.S458S 0.27 TCGA-CD-8535-01 11 71733400 71733400 A T NUMA1 Missense_Mutation p.F119L 0.23 benign(0.005) TCGA-CD-8535-01 11 77921035 77921035 G A USP35 Missense_Mutation p.V712M 0.38 tolerated_low_confidence(0.11) unknown(0) TCGA-CD-8535-01 11 7960149 7960149 T G OR10A3 Silent p.R307R 0.21 TCGA-CD-8535-01 11 799408 799408 G A PIDD Missense_Mutation p.R878C 0.33 deleterious(0) possibly_damaging(0.696) TCGA-CD-8535-01 11 85712081 85712081 T C PICALM Silent p.L338L 0.30 TCGA-CD-8535-01 11 88781002 88781002 T C GRM5 Silent p.K13K 0.18 TCGA-CD-8535-01 12 100751156 100751156 G T SLC17A8 5'UTR 0.35 TCGA-CD-8535-01 12 110939866 110939866 G C VPS29 5'UTR 0.32 TCGA-CD-8535-01 12 118198972 118198972 G - KSR2 Frame_Shift_Del p.P277Rfs*3 0.28 TCGA-CD-8535-01 12 20854340 20854340 G T SLCO1C1 Missense_Mutation p.R73M 0.83 deleterious(0) probably_damaging(0.999) TCGA-CD-8535-01 12 21370153 21370153 A C SLCO1B1 Missense_Mutation p.K533T 0.88 deleterious(0.04) probably_damaging(0.93) TCGA-CD-8535-01 12 22047092 22047092 G A ABCC9 Missense_Mutation p.A559V 0.89 tolerated(0.39) benign(0.01) TCGA-CD-8535-01 12 25398281 25398281 C T KRAS Missense_Mutation p.G13D 0.93 deleterious(0.04) possibly_damaging(0.506) TCGA-CD-8535-01 12 46355485 46355485 C T SCAF11 Missense_Mutation p.E73K 0.46 tolerated(0.13) probably_damaging(0.93) TCGA-CD-8535-01 12 48196037 48196037 C T HDAC7 Missense_Mutation p.G14S 0.14 deleterious_low_confidence(0.04) benign(0.12) TCGA-CD-8535-01 12 55360985 55360985 A T TESPA1 Missense_Mutation p.L98M 0.21 deleterious(0) probably_damaging(0.98) TCGA-CD-8535-01 12 56415326 56415326 G A IKZF4 Missense_Mutation p.V17I 0.60 tolerated_low_confidence(0.81) benign(0) TCGA-CD-8535-01 12 75698628 75698628 A C CAPS2 Missense_Mutation p.L249V 0.49 tolerated(0.54) benign(0.001) TCGA-CD-8535-01 12 78443823 78443823 T C NAV3 Silent p.L692L 0.37 TCGA-CD-8535-01 12 81329555 81329555 T C LIN7A Intron 0.26 TCGA-CD-8535-01 12 88383059 88383059 T G C12orf50 Missense_Mutation p.K228Q 0.30 deleterious(0.02) benign(0.094) TCGA-CD-8535-01 13 113536401 113536401 G C ATP11A 3'UTR 0.28 TCGA-CD-8535-01 13 22245965 22245965 G T FGF9 5'UTR 0.31 TCGA-CD-8535-01 13 32699009 32699009 C A FRY Missense_Mutation p.A238D 0.36 deleterious(0) benign(0.219) TCGA-CD-8535-01 13 37439801 37439801 G A SMAD9 Silent p.S292S 0.27 TCGA-CD-8535-01 13 38158997 38158997 C T POSTN Missense_Mutation p.E322K 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-CD-8535-01 13 41949845 41949845 A T NAA16 3'UTR 0.29 TCGA-CD-8535-01 13 46287490 46287490 C T SPERT Silent p.A110A 0.24 TCGA-CD-8535-01 13 47409677 47409677 G A HTR2A Silent p.I237I 0.55 TCGA-CD-8535-01 13 52952250 52952250 T G THSD1 Missense_Mutation p.S619R 0.21 deleterious(0) probably_damaging(0.974) TCGA-CD-8535-01 14 20295670 20295670 A T OR4N2 Missense_Mutation p.Q21H 0.07 tolerated(0.51) benign(0) TCGA-CD-8535-01 14 22356434 22356434 C T TRAV12-2 Missense_Mutation p.P31L 0.34 deleterious(0.05) benign(0.039) TCGA-CD-8535-01 14 24617255 24617255 G A RNF31 Missense_Mutation p.S88N 0.87 tolerated(0.63) benign(0.015) TCGA-CD-8535-01 14 30046521 30046521 T G PRKD1 Missense_Mutation p.S888R 0.78 tolerated_low_confidence(0.53) benign(0.001) TCGA-CD-8535-01 14 33291387 33291387 A C AKAP6 Missense_Mutation p.E1456D 0.16 tolerated_low_confidence(0.11) benign(0.024) TCGA-CD-8535-01 14 42360793 42360793 G T LRFN5 Missense_Mutation p.A576S 0.21 tolerated(0.58) benign(0.003) TCGA-CD-8535-01 14 52741454 52741454 C T PTGDR Silent p.R284R 0.38 TCGA-CD-8535-01 14 76238105 76238105 G A TTLL5 Missense_Mutation p.A682T 0.40 tolerated(0.1) probably_damaging(0.928) TCGA-CD-8535-01 14 76621146 76621146 T C GPATCH2L Missense_Mutation p.L147P 0.43 deleterious(0.04) probably_damaging(0.994) TCGA-CD-8535-01 14 99182660 99182660 T C C14orf177 Silent p.S44S 0.48 TCGA-CD-8535-01 15 22383400 22383400 G A OR4N4 Missense_Mutation p.V310M 0.38 tolerated(0.21) benign(0) TCGA-CD-8535-01 15 35275157 35275157 T A ZNF770 Missense_Mutation p.H160L 0.41 deleterious(0) probably_damaging(0.996) TCGA-CD-8535-01 15 42211597 42211597 C A EHD4 Missense_Mutation p.K245N 0.30 deleterious(0) probably_damaging(0.991) TCGA-CD-8535-01 15 48055225 48055225 T G SEMA6D Missense_Mutation p.L224R 0.40 deleterious(0) probably_damaging(0.953) TCGA-CD-8535-01 15 48594956 48594956 C T SLC12A1 Silent p.P1058P 0.46 TCGA-CD-8535-01 15 51687172 51687172 C T GLDN Silent p.L228L 0.67 TCGA-CD-8535-01 15 56924164 56924164 G T ZNF280D Silent p.I824I 0.40 TCGA-CD-8535-01 15 60919479 60919479 C A RORA Missense_Mutation p.R32I 0.35 deleterious_low_confidence(0.03) benign(0.308) TCGA-CD-8535-01 15 84659886 84659886 A C ADAMTSL3 Missense_Mutation p.H1298P 0.42 tolerated(0.28) benign(0.163) TCGA-CD-8535-01 15 90321444 90321444 C A MESP2 Missense_Mutation p.P358Q 0.53 deleterious_low_confidence(0.05) benign(0.026) TCGA-CD-8535-01 16 22926778 22926778 T C HS3ST2 Silent p.T333T 0.32 TCGA-CD-8535-01 16 24104114 24104114 A C PRKCB Silent p.R178R 0.56 TCGA-CD-8535-01 16 511421 511421 G C RAB11FIP3 Missense_Mutation p.K244N 0.07 deleterious(0.01) possibly_damaging(0.875) TCGA-CD-8535-01 16 75575315 75575315 C T TMEM231 Missense_Mutation p.V264M 0.48 tolerated(0.09) probably_damaging(0.985) TCGA-CD-8535-01 16 77334269 77334269 A T ADAMTS18 Silent p.A855A 0.24 TCGA-CD-8535-01 17 10346803 10346803 G A MYH4 Silent p.L1903L 0.41 TCGA-CD-8535-01 17 15134380 15134380 C A PMP22 Missense_Mutation p.A113S 0.09 deleterious(0.01) benign(0.338) TCGA-CD-8535-01 17 15619704 15619704 A T ZNF286A Missense_Mutation p.K222N 0.33 tolerated(0.06) benign(0.271) TCGA-CD-8535-01 17 16221220 16221220 A C PIGL Missense_Mutation p.K220Q 0.86 tolerated(0.27) benign(0.013) TCGA-CD-8535-01 17 19651700 19651701 - A ALDH3A1 5'Flank 0.48 TCGA-CD-8535-01 17 19999988 19999988 G A SPECC1 Nonsense_Mutation p.W8* 0.40 TCGA-CD-8535-01 17 21319358 21319358 C T KCNJ12 Missense_Mutation p.P235L 0.12 tolerated(0.1) probably_damaging(0.927) TCGA-CD-8535-01 17 21826233 21826233 G A FAM27L RNA 0.46 TCGA-CD-8535-01 17 26695926 26695926 A G VTN Missense_Mutation p.Y265H 0.34 tolerated(0.36) possibly_damaging(0.678) TCGA-CD-8535-01 17 28384851 28384852 - T EFCAB5 Frame_Shift_Ins p.K844* 0.20 TCGA-CD-8535-01 17 30536532 30536532 T A RHOT1 Intron 0.22 TCGA-CD-8535-01 17 32953468 32953468 C T TMEM132E Silent p.I130I 0.29 TCGA-CD-8535-01 17 3301149 3301149 T G OR1E1 Missense_Mutation p.K186Q 0.51 deleterious(0.05) possibly_damaging(0.619) TCGA-CD-8535-01 17 33951554 33951554 A T AP2B1 Missense_Mutation p.I222F 0.36 deleterious(0) probably_damaging(0.986) TCGA-CD-8535-01 17 40315668 40315668 G C KCNH4 Silent p.L811L 0.38 TCGA-CD-8535-01 17 46998578 46998578 C G UBE2Z Missense_Mutation p.I249M 0.17 tolerated(0.08) benign(0.245) TCGA-CD-8535-01 17 48646631 48646631 C T CACNA1G Missense_Mutation p.R154W 0.21 deleterious(0.01) probably_damaging(1) TCGA-CD-8535-01 17 60637416 60637416 A C TLK2 Missense_Mutation p.K254Q 0.27 tolerated(0.07) benign(0.267) TCGA-CD-8535-01 17 61907794 61907796 AAG - PSMC5 In_Frame_Del p.E163del 0.47 TCGA-CD-8535-01 17 7330106 7330106 C T C17orf74 Nonsense_Mutation p.R266* 0.29 TCGA-CD-8535-01 17 74006521 74006521 T A EVPL Missense_Mutation p.E922V 0.30 tolerated(0.09) probably_damaging(0.92) TCGA-CD-8535-01 17 7577022 7577022 G A TP53 Nonsense_Mutation p.R306* 0.83 TCGA-CD-8535-01 17 77708875 77708875 G A ENPP7 Missense_Mutation p.G145R 0.48 deleterious(0) probably_damaging(0.995) TCGA-CD-8535-01 17 9808171 9808171 G A RCVRN Silent p.Y109Y 0.35 TCGA-CD-8535-01 18 14478666 14478666 T G CXADRP3 RNA 0.30 TCGA-CD-8535-01 18 21357584 21357584 G T LAMA3 Splice_Site p.X490_splice 0.14 TCGA-CD-8535-01 18 40323528 40323528 A C RIT2 Missense_Mutation p.L195R 0.22 tolerated(0.53) possibly_damaging(0.766) TCGA-CD-8535-01 18 44470842 44470842 C T PIAS2 Missense_Mutation p.R67Q 0.31 tolerated(0.38) benign(0.038) TCGA-CD-8535-01 18 59742019 59742021 ATA - PIGN In_Frame_Del p.I870del 0.64 TCGA-CD-8535-01 18 6943298 6943298 T G LAMA1 Missense_Mutation p.N2983T 0.58 tolerated(0.11) benign(0.232) TCGA-CD-8535-01 18 7034595 7034595 A T LAMA1 Missense_Mutation p.F645Y 0.58 deleterious(0.01) probably_damaging(0.974) TCGA-CD-8535-01 18 9931832 9931846 AAATCTTAAATTGCG - VAPA In_Frame_Del p.L37_N41del 0.39 TCGA-CD-8535-01 19 10071440 10071440 C A COL5A3 Nonsense_Mutation p.E1660* 0.38 TCGA-CD-8535-01 19 11577597 11577597 C T ELAVL3 Missense_Mutation p.G19S 0.28 tolerated_low_confidence(0.99) benign(0.001) TCGA-CD-8535-01 19 19655402 19655402 C T CILP2 Missense_Mutation p.S683L 0.33 deleterious(0) probably_damaging(0.998) TCGA-CD-8535-01 19 20808024 20808024 T G ZNF626 Missense_Mutation p.K220T 0.36 deleterious(0.01) probably_damaging(0.998) TCGA-CD-8535-01 19 21117821 21117821 A C ZNF85 Missense_Mutation p.K66T 0.36 deleterious(0.01) possibly_damaging(0.792) TCGA-CD-8535-01 19 22941160 22941160 A G ZNF99 Silent p.A517A 0.37 TCGA-CD-8535-01 19 36430970 36430970 C T LRFN3 Missense_Mutation p.R215C 0.11 deleterious(0) probably_damaging(0.993) TCGA-CD-8535-01 19 36583682 36583682 A G WDR62 Missense_Mutation p.T768A 0.12 tolerated(0.65) benign(0.015) TCGA-CD-8535-01 19 37037814 37037814 A G ZNF529 Missense_Mutation p.L549P 0.13 deleterious(0) possibly_damaging(0.648) TCGA-CD-8535-01 19 37117657 37117657 T G ZNF382 Silent p.P286P 0.12 TCGA-CD-8535-01 19 38966081 38966081 C T RYR1 Silent p.N1428N 0.07 TCGA-CD-8535-01 19 39876874 39876874 C T PAF1 Silent p.E451E 0.18 TCGA-CD-8535-01 19 39980387 39980387 C T TIMM50 Missense_Mutation p.S433F 0.39 deleterious(0) probably_damaging(0.935) TCGA-CD-8535-01 19 40392045 40392045 C T FCGBP Missense_Mutation p.V2781M 0.11 probably_damaging(0.999) TCGA-CD-8535-01 19 40433051 40433051 C T FCGBP Silent p.T406T 0.11 TCGA-CD-8535-01 19 42509893 42509893 C T GRIK5 Missense_Mutation p.G749S 0.21 deleterious(0) probably_damaging(1) TCGA-CD-8535-01 19 45321843 45321843 C T BCAM Silent p.V381V 0.35 TCGA-CD-8535-01 19 52376330 52376330 T G ZNF577 Silent p.R305R 0.53 TCGA-CD-8535-01 19 53770759 53770759 A C VN1R4 Missense_Mutation p.F54V 0.12 tolerated(0.53) benign(0.036) TCGA-CD-8535-01 19 57175393 57175393 A T ZNF835 Missense_Mutation p.C392S 0.52 deleterious(0) probably_damaging(1) TCGA-CD-8535-01 19 8326872 8326872 C T CERS4 Missense_Mutation p.A355V 0.43 tolerated(0.37) benign(0.014) TCGA-CD-8535-01 1 110038981 110038981 G A CYB561D1 3'UTR 0.62 TCGA-CD-8535-01 1 12939698 12939698 T G PRAMEF4 Missense_Mutation p.Q368H 0.40 tolerated(0.18) probably_damaging(0.999) TCGA-CD-8535-01 1 144952198 144952198 T C PDE4DIP Intron 0.14 TCGA-CD-8535-01 1 152327439 152327439 A C FLG2 Missense_Mutation p.S941R 0.24 unknown(0) TCGA-CD-8535-01 1 156100427 156100427 G A LMNA Missense_Mutation p.D126N 0.28 deleterious(0) possibly_damaging(0.719) TCGA-CD-8535-01 1 158259869 158259869 G A CD1C Silent p.Q5Q 0.31 TCGA-CD-8535-01 1 158298772 158298772 C G CD1B Missense_Mutation p.A307P 0.16 deleterious(0.01) probably_damaging(0.949) TCGA-CD-8535-01 1 158517014 158517014 A C OR6Y1 Missense_Mutation p.I294M 0.30 deleterious(0) probably_damaging(0.999) TCGA-CD-8535-01 1 159283665 159283665 T G OR10J3 Missense_Mutation p.K262T 0.25 deleterious(0) probably_damaging(0.978) TCGA-CD-8535-01 1 159284373 159284373 A C OR10J3 Missense_Mutation p.L26R 0.26 deleterious(0) possibly_damaging(0.635) TCGA-CD-8535-01 1 161987209 161987209 C T OLFML2B Missense_Mutation p.R176Q 0.55 tolerated(0.27) possibly_damaging(0.801) TCGA-CD-8535-01 1 162741933 162741933 G A DDR2 Missense_Mutation p.A542T 0.31 deleterious(0.01) benign(0.259) TCGA-CD-8535-01 1 169562867 169562867 G A SELP Silent p.L795L 0.29 TCGA-CD-8535-01 1 175046771 175046771 T C TNN Silent p.L73L 0.24 TCGA-CD-8535-01 1 176681096 176681096 A G PAPPA2 Silent p.K1259K 0.34 TCGA-CD-8535-01 1 19489100 19489100 C T UBR4 Silent p.V1590V 0.38 TCGA-CD-8535-01 1 196227371 196227371 A G KCNT2 Missense_Mutation p.L1055P 0.27 deleterious(0.03) probably_damaging(0.999) TCGA-CD-8535-01 1 196250004 196250004 G T KCNT2 Missense_Mutation p.L966I 0.32 tolerated(0.1) possibly_damaging(0.625) TCGA-CD-8535-01 1 203317143 203317143 A G FMOD Missense_Mutation p.F86L 0.29 deleterious(0.04) possibly_damaging(0.654) TCGA-CD-8535-01 1 233344423 233344423 T G PCNXL2 Missense_Mutation p.I902L 0.25 tolerated(0.18) benign(0.036) TCGA-CD-8535-01 1 237608821 237608821 A T RYR2 Missense_Mutation p.R431W 0.12 probably_damaging(0.924) TCGA-CD-8535-01 1 24413270 24413270 A G MYOM3 Silent p.P554P 0.08 TCGA-CD-8535-01 1 247978545 247978545 A C OR14A16 Missense_Mutation p.S163A 0.21 tolerated(0.25) probably_damaging(0.974) TCGA-CD-8535-01 1 32120438 32120438 C T COL16A1 Missense_Mutation p.E1438K 0.37 probably_damaging(0.918) TCGA-CD-8535-01 1 44086848 44086848 T A PTPRF Missense_Mutation p.M1867K 0.35 deleterious(0) possibly_damaging(0.744) TCGA-CD-8535-01 1 74507054 74507054 A C LRRIQ3 Missense_Mutation p.L521V 0.51 deleterious(0.02) benign(0.315) TCGA-CD-8535-01 1 9322285 9322285 A C H6PD Silent p.R305R 0.67 TCGA-CD-8535-01 1 99772202 99772202 G C LPPR4 Missense_Mutation p.G643A 0.32 tolerated(0.07) possibly_damaging(0.695) TCGA-CD-8535-01 20 21687617 21687617 G C PAX1 Silent p.T276T 0.06 TCGA-CD-8535-01 20 25276278 25276278 G A PYGB Missense_Mutation p.C784Y 0.14 deleterious(0) probably_damaging(0.993) TCGA-CD-8535-01 20 30193969 30193969 C T ID1 3'UTR 0.33 TCGA-CD-8535-01 20 33874645 33874645 C A FAM83C Missense_Mutation p.G646V 0.17 tolerated_low_confidence(0.06) benign(0.002) TCGA-CD-8535-01 20 34782210 34782210 C T EPB41L1 Silent p.G459G 0.06 TCGA-CD-8535-01 20 40049347 40049347 G A CHD6 Silent p.A1976A 0.12 TCGA-CD-8535-01 20 40049356 40049356 A C CHD6 Missense_Mutation p.N1973K 0.14 tolerated_low_confidence(0.58) benign(0.001) TCGA-CD-8535-01 20 44639165 44639165 G A MMP9 Missense_Mutation p.D139N 0.11 tolerated(0.05) possibly_damaging(0.485) TCGA-CD-8535-01 20 5282999 5282999 A C PROKR2 Missense_Mutation p.L281R 0.22 deleterious(0) probably_damaging(0.996) TCGA-CD-8535-01 20 62166342 62166342 C T PTK6 Missense_Mutation p.A101T 0.10 tolerated(0.16) benign(0.03) TCGA-CD-8535-01 21 10908834 10908834 T A TPTE Missense_Mutation p.E504V 0.33 deleterious(0.04) possibly_damaging(0.756) TCGA-CD-8535-01 21 10934995 10934995 T C TPTE Silent p.E266E 0.09 TCGA-CD-8535-01 21 10971302 10971302 G A TPTE Missense_Mutation p.P19S 0.17 tolerated_low_confidence(0.31) benign(0.08) TCGA-CD-8535-01 21 39755318 39755318 C T ERG 3'UTR 0.50 TCGA-CD-8535-01 21 45820246 45820246 C T TRPM2 Silent p.I771I 0.30 TCGA-CD-8535-01 21 47321018 47321018 G C PCBP3 Missense_Mutation p.K110N 0.31 deleterious(0.04) probably_damaging(0.997) TCGA-CD-8535-01 22 22707577 22707577 C A IGLV5-48 Missense_Mutation p.F55L 0.57 tolerated(0.2) benign(0.002) TCGA-CD-8535-01 22 22891014 22891014 C T PRAME Silent p.S335S 0.23 TCGA-CD-8535-01 22 24087318 24087318 G A ZNF70 Missense_Mutation p.P4S 0.08 tolerated(0.33) benign(0.004) TCGA-CD-8535-01 2 100368730 100368730 G A AFF3 Nonsense_Mutation p.Q344* 0.46 TCGA-CD-8535-01 2 10188508 10188508 C G KLF11 Silent p.L348L 0.05 TCGA-CD-8535-01 2 109347834 109347834 G A RANBP2 Silent p.L103L 0.45 TCGA-CD-8535-01 2 109356991 109356991 G A RANBP2 Missense_Mutation p.E277K 0.85 deleterious(0) benign(0.001) TCGA-CD-8535-01 2 114355064 114355064 C T WASH2P Intron 0.24 TCGA-CD-8535-01 2 131985873 131985873 T C POTEE Missense_Mutation p.L325P 0.16 deleterious_low_confidence(0.03) probably_damaging(0.928) TCGA-CD-8535-01 2 136626249 136626249 G A MCM6 Missense_Mutation p.P183S 0.30 tolerated(0.11) benign(0.213) TCGA-CD-8535-01 2 138320844 138320844 A G THSD7B Silent p.V1067V 0.32 TCGA-CD-8535-01 2 141598520 141598520 T G LRP1B Missense_Mutation p.K1694T 0.54 benign(0.403) TCGA-CD-8535-01 2 15307367 15307367 G C NBAS Silent p.P2307P 0.48 TCGA-CD-8535-01 2 166210751 166210751 A C SCN2A Missense_Mutation p.N990T 0.35 deleterious(0) possibly_damaging(0.46) TCGA-CD-8535-01 2 166535567 166535567 C T CSRNP3 Silent p.S354S 0.44 TCGA-CD-8535-01 2 168115844 168115844 A C XIRP2 3'UTR 0.29 TCGA-CD-8535-01 2 179431873 179431873 G C TTN Missense_Mutation p.T26329S 0.43 TCGA-CD-8535-01 2 179544122 179544122 G T TTN Missense_Mutation p.P11229Q 0.29 TCGA-CD-8535-01 2 179560121 179560121 T A TTN Missense_Mutation p.K10408N 0.36 TCGA-CD-8535-01 2 179593353 179593353 T C TTN Missense_Mutation p.S6434G 0.48 TCGA-CD-8535-01 2 201363767 201363767 T C KCTD18 Missense_Mutation p.N138S 0.61 tolerated(0.3) benign(0.007) TCGA-CD-8535-01 2 206927685 206927685 G A INO80D Missense_Mutation p.S19L 0.29 deleterious(0.01) possibly_damaging(0.876) TCGA-CD-8535-01 2 210574735 210574735 T A MAP2 Silent p.S1610S 0.43 TCGA-CD-8535-01 2 211465397 211465397 G A CPS1 Silent p.E562E 0.31 TCGA-CD-8535-01 2 231380380 231380380 T C SP100 Intron 0.50 TCGA-CD-8535-01 2 234681146 234681146 C T UGT1A4 Missense_Mutation p.R516W 0.48 deleterious(0) probably_damaging(0.979) TCGA-CD-8535-01 2 33036126 33036126 G A TTC27 Silent p.G678G 0.35 TCGA-CD-8535-01 2 40657171 40657171 C A SLC8A1 Missense_Mutation p.A84S 0.37 tolerated(0.26) benign(0.08) TCGA-CD-8535-01 2 79255359 79255359 A C REG3G Missense_Mutation p.N162T 0.34 tolerated(0.05) benign(0.065) TCGA-CD-8535-01 2 99860569 99860569 G A LYG2 Missense_Mutation p.A138V 0.51 deleterious(0.05) benign(0.226) TCGA-CD-8535-01 3 100170656 100170656 G A LNP1 Missense_Mutation p.D84N 0.55 tolerated(0.74) benign(0.013) TCGA-CD-8535-01 3 112548191 112548191 C A CD200R1L Missense_Mutation p.Q29H 0.39 tolerated(0.17) benign(0.025) TCGA-CD-8535-01 3 121981057 121981057 G A CASR Missense_Mutation p.R392Q 0.59 tolerated(0.14) possibly_damaging(0.526) TCGA-CD-8535-01 3 151046346 151046346 G A P2RY13 Silent p.F166F 0.59 TCGA-CD-8535-01 3 172165990 172165990 G A GHSR Missense_Mutation p.R72C 0.50 deleterious(0) probably_damaging(0.977) TCGA-CD-8535-01 3 173997382 173997382 A T NLGN1 Missense_Mutation p.N531Y 0.32 deleterious(0) probably_damaging(0.997) TCGA-CD-8535-01 3 174814991 174814991 C T NAALADL2 Missense_Mutation p.S152L 0.39 tolerated(0.08) benign(0.006) TCGA-CD-8535-01 3 190366294 190366294 G A IL1RAP Intron 0.23 TCGA-CD-8535-01 3 35723217 35723217 T G ARPP21 5'UTR 0.46 TCGA-CD-8535-01 3 52521668 52521668 C T NISCH Silent p.G720G 0.61 TCGA-CD-8535-01 3 6903438 6903438 T C GRM7 Silent p.T121T 0.28 TCGA-CD-8535-01 3 89468410 89468410 T C EPHA3 Silent p.I648I 0.61 TCGA-CD-8535-01 4 100528022 100528022 A G MTTP Missense_Mutation p.S488G 0.37 deleterious(0.01) benign(0.119) TCGA-CD-8535-01 4 100870839 100870839 G A H2AFZ Missense_Mutation p.S21L 0.35 tolerated(0.13) benign(0.11) TCGA-CD-8535-01 4 119158338 119158338 T G NDST3 Missense_Mutation p.L694R 0.41 deleterious(0) probably_damaging(0.999) TCGA-CD-8535-01 4 157732094 157732094 T A PDGFC Silent p.P130P 0.35 TCGA-CD-8535-01 4 158282799 158282799 A C GRIA2 Missense_Mutation p.S801R 0.38 tolerated(0.11) benign(0.018) TCGA-CD-8535-01 4 164247790 164247790 T G NPY1R 5'UTR 0.38 TCGA-CD-8535-01 4 166000801 166000801 G A TMEM192 3'UTR 0.44 TCGA-CD-8535-01 4 167675653 167675653 T A SPOCK3 Intron 0.44 TCGA-CD-8535-01 4 17528460 17528460 A G CLRN2 Missense_Mutation p.I152V 0.54 tolerated(1) benign(0.003) TCGA-CD-8535-01 4 177713384 177713384 C T VEGFC Missense_Mutation p.A28T 0.58 tolerated_low_confidence(0.36) benign(0.003) TCGA-CD-8535-01 4 178363527 178363527 C T AGA Translation_Start_Site p.M1? 0.47 deleterious_low_confidence(0.01) benign(0.048) TCGA-CD-8535-01 4 1980505 1980505 T C WHSC1 Missense_Mutation p.C1323R 0.68 deleterious(0) probably_damaging(0.999) TCGA-CD-8535-01 4 39439358 39439358 G A KLB Missense_Mutation p.D450N 0.38 deleterious(0.03) possibly_damaging(0.835) TCGA-CD-8535-01 4 73012916 73012916 A G NPFFR2 Missense_Mutation p.K319R 0.44 tolerated(0.29) benign(0.4) TCGA-CD-8535-01 4 77230709 77230709 T C FAM47E-STBD1 Silent p.S211S 0.33 TCGA-CD-8535-01 5 112175951 112175952 - A APC Frame_Shift_Ins p.T1556Nfs*3 0.39 TCGA-CD-8535-01 5 11411757 11411757 T G CTNND2 Missense_Mutation p.Q110H 0.40 deleterious(0.02) possibly_damaging(0.719) TCGA-CD-8535-01 5 140481367 140481367 C T PCDHB3 Silent p.N378N 0.35 TCGA-CD-8535-01 5 140536790 140536790 T G PCDHB17 Nonsense_Mutation p.L405* 0.41 TCGA-CD-8535-01 5 141026260 141026260 G A FCHSD1 Silent p.G318G 0.40 TCGA-CD-8535-01 5 15937126 15937126 A G FBXL7 Missense_Mutation p.K436R 0.60 tolerated(0.72) benign(0.002) TCGA-CD-8535-01 5 161113263 161113263 A C GABRA6 Missense_Mutation p.E22D 0.38 tolerated_low_confidence(0.46) benign(0.009) TCGA-CD-8535-01 5 16671582 16671582 G A MYO10 Silent p.D1793D 0.30 TCGA-CD-8535-01 5 177059531 177059531 C T RP11-1277A3.2 Intron 0.52 TCGA-CD-8535-01 5 304319 304319 C T PDCD6 Missense_Mutation p.T64I 0.11 deleterious(0) probably_damaging(0.996) TCGA-CD-8535-01 5 50117139 50117139 T C PARP8 Silent p.P587P 0.79 TCGA-CD-8535-01 6 10995345 10995345 C T ELOVL2 Missense_Mutation p.V134I 0.39 tolerated(1) probably_damaging(0.999) TCGA-CD-8535-01 6 112671377 112671377 A C RFPL4B Missense_Mutation p.K156T 0.37 tolerated(0.14) benign(0.245) TCGA-CD-8535-01 6 117710930 117710930 G C ROS1 Missense_Mutation p.R448G 0.38 tolerated(0.12) benign(0.124) TCGA-CD-8535-01 6 135539112 135539112 C A MYB Silent p.V760V 0.41 TCGA-CD-8535-01 6 149916259 149916259 C T KATNA1 Silent p.E463E 0.39 TCGA-CD-8535-01 6 155465823 155465823 G A TIAM2 Missense_Mutation p.D572N 0.49 tolerated(0.49) benign(0.138) TCGA-CD-8535-01 6 155485683 155485683 G A TIAM2 Silent p.K721K 0.39 TCGA-CD-8535-01 6 160225002 160225002 T G PNLDC1 Missense_Mutation p.I74R 0.35 tolerated(0.09) benign(0.148) TCGA-CD-8535-01 6 16143326 16143326 G A MYLIP Silent p.S180S 0.36 TCGA-CD-8535-01 6 25820066 25820066 T C SLC17A1 Silent p.Q95Q 0.46 TCGA-CD-8535-01 6 25850086 25850086 T A SLC17A3 Missense_Mutation p.L406F 0.44 tolerated(0.3) benign(0.034) TCGA-CD-8535-01 6 27799250 27799250 T A HIST1H4K Missense_Mutation p.H19L 0.48 deleterious(0) unknown(0) TCGA-CD-8535-01 6 29589878 29589878 G A GABBR1 Intron 0.42 TCGA-CD-8535-01 6 30890003 30890003 G A VARS2 Silent p.Q669Q 0.47 TCGA-CD-8535-01 6 35965625 35965625 C T SLC26A8 Missense_Mutation p.V173I 0.35 tolerated(1) benign(0.001) TCGA-CD-8535-01 6 51484093 51484093 T C PKHD1 Missense_Mutation p.E4004G 0.50 deleterious_low_confidence(0) benign(0.006) TCGA-CD-8535-01 6 96054138 96054138 C T MANEA Missense_Mutation p.P416S 0.37 deleterious(0.02) probably_damaging(0.999) TCGA-CD-8535-01 6 97629852 97629852 T A MMS22L Missense_Mutation p.Q771L 0.41 deleterious(0) benign(0.079) TCGA-CD-8535-01 6 97629859 97629859 T G MMS22L Missense_Mutation p.I769L 0.44 tolerated(0.54) benign(0) TCGA-CD-8535-01 7 100674400 100674400 G C MUC17 Splice_Site p.X28_splice 0.48 TCGA-CD-8535-01 7 100675338 100675338 G T MUC17 Missense_Mutation p.G214V 0.55 benign(0.441) TCGA-CD-8535-01 7 100675869 100675869 G A MUC17 Missense_Mutation p.G391E 0.55 probably_damaging(0.92) TCGA-CD-8535-01 7 106508581 106508581 A G PIK3CG Missense_Mutation p.D192G 0.38 deleterious(0.03) probably_damaging(0.971) TCGA-CD-8535-01 7 106508825 106508825 C T PIK3CG Silent p.R273R 0.25 TCGA-CD-8535-01 7 124404054 124404054 T C GPR37 Missense_Mutation p.K326R 0.21 tolerated(0.32) benign(0.312) TCGA-CD-8535-01 7 126409924 126409924 A C GRM8 Missense_Mutation p.F451C 0.27 deleterious(0) probably_damaging(0.997) TCGA-CD-8535-01 7 131859619 131859619 A C PLXNA4 Missense_Mutation p.I1312S 0.34 deleterious(0) probably_damaging(0.999) TCGA-CD-8535-01 7 133948719 133948719 C T LRGUK Missense_Mutation p.R824C 0.51 deleterious(0) possibly_damaging(0.802) TCGA-CD-8535-01 7 139791694 139791694 G A KDM7A Missense_Mutation p.P881S 0.77 tolerated(0.13) benign(0.011) TCGA-CD-8535-01 7 20685666 20685666 T G ABCB5 Missense_Mutation p.F296V 0.24 tolerated(0.07) benign(0.287) TCGA-CD-8535-01 7 38783011 38783011 C T VPS41 Missense_Mutation p.D705N 0.29 tolerated(0.16) benign(0.16) TCGA-CD-8535-01 7 5567271 5567271 C A ACTB 3'UTR 0.48 TCGA-CD-8535-01 7 64452191 64452191 A G ERV3-1 Missense_Mutation p.L405P 0.12 tolerated(0.13) benign(0.022) TCGA-CD-8535-01 7 73008307 73008307 A C MLXIPL Missense_Mutation p.L816R 0.42 deleterious(0) probably_damaging(0.999) TCGA-CD-8535-01 7 78636484 78636484 A C MAGI2 Missense_Mutation p.L114V 0.41 deleterious(0.01) benign(0.355) TCGA-CD-8535-01 7 81746398 81746398 T C CACNA2D1 Missense_Mutation p.H163R 0.37 tolerated(0.09) possibly_damaging(0.679) TCGA-CD-8535-01 7 82545288 82545288 T G PCLO Missense_Mutation p.K4005T 0.47 unknown(0) TCGA-CD-8535-01 7 87148690 87148690 C T ABCB1 Missense_Mutation p.G960E 0.30 deleterious(0) probably_damaging(0.999) TCGA-CD-8535-01 7 92983058 92983058 G A CCDC132 Missense_Mutation p.R857Q 0.15 tolerated(0.24) benign(0.298) TCGA-CD-8535-01 8 104955056 104955056 T C RIMS2 Missense_Mutation p.L868P 0.19 deleterious_low_confidence(0) probably_damaging(1) TCGA-CD-8535-01 8 106813708 106813708 T C ZFPM2 Silent p.S466S 0.17 TCGA-CD-8535-01 8 10683705 10683705 G A SOX7 Silent p.S117S 0.20 TCGA-CD-8535-01 8 110476639 110476639 T G PKHD1L1 Missense_Mutation p.F2526L 0.49 deleterious(0.05) benign(0.109) TCGA-CD-8535-01 8 113237068 113237068 C T CSMD3 Missense_Mutation p.A3686T 0.40 tolerated(0.23) benign(0.002) TCGA-CD-8535-01 8 113256779 113256779 T A CSMD3 Missense_Mutation p.T3416S 0.32 tolerated(0.19) benign(0.01) TCGA-CD-8535-01 8 118184926 118184926 T A SLC30A8 3'UTR 0.48 TCGA-CD-8535-01 8 135521911 135521911 A G ZFAT Missense_Mutation p.L1148P 0.23 deleterious(0.04) benign(0.255) TCGA-CD-8535-01 8 139164740 139164740 C A FAM135B Missense_Mutation p.D660Y 0.25 deleterious(0) probably_damaging(0.962) TCGA-CD-8535-01 8 143569806 143569806 G A BAI1 Nonsense_Mutation p.W797* 0.26 TCGA-CD-8535-01 8 145753262 145753262 A C C8orf82 Intron 0.30 TCGA-CD-8535-01 8 3855585 3855585 A G CSMD1 Missense_Mutation p.S220P 0.56 possibly_damaging(0.697) TCGA-CD-8535-01 8 41552795 41552795 C T ANK1 Silent p.E1046E 0.53 TCGA-CD-8535-01 8 48733370 48733370 G A PRKDC Silent p.Y3081Y 0.22 TCGA-CD-8535-01 8 52733168 52733168 G T PCMTD1 Missense_Mutation p.P273T 0.06 tolerated(0.1) benign(0.003) TCGA-CD-8535-01 8 65527645 65527645 T G CYP7B1 Missense_Mutation p.K332T 0.13 deleterious(0.03) probably_damaging(0.988) TCGA-CD-8535-01 8 72184108 72184108 G T EYA1 Nonsense_Mutation p.S284* 0.22 TCGA-CD-8535-01 8 72970017 72970017 C T TRPA1 Missense_Mutation p.R343H 0.40 tolerated(0.15) probably_damaging(0.976) TCGA-CD-8535-01 8 75227106 75227106 C G JPH1 Missense_Mutation p.A377P 0.40 deleterious(0) probably_damaging(0.993) TCGA-CD-8535-01 8 86041417 86041417 G A LRRCC1 Missense_Mutation p.E477K 0.21 deleterious(0.03) benign(0.314) TCGA-CD-8535-01 9 107645431 107645431 G A ABCA1 Missense_Mutation p.R104C 0.47 deleterious(0) possibly_damaging(0.899) TCGA-CD-8535-01 9 111798631 111798632 - TGGCACTGC TMEM245 In_Frame_Ins p.A749_P751dup 0.13 TCGA-CD-8535-01 9 118949686 118949686 A C PAPPA Missense_Mutation p.Q223H 0.19 deleterious(0.03) possibly_damaging(0.848) TCGA-CD-8535-01 9 119903754 119903754 G A ASTN2 Intron 0.61 TCGA-CD-8535-01 9 130207312 130207313 TA - ZNF79 Frame_Shift_Del p.Y445* 0.16 TCGA-CD-8535-01 9 134015972 134015972 T C NUP214 Missense_Mutation p.M390T 0.62 unknown(0) TCGA-CD-8535-01 9 135742311 135742311 C T AK8 Missense_Mutation p.A67T 0.65 deleterious(0) probably_damaging(0.953) TCGA-CD-8535-01 9 135926199 135926199 G A GTF3C5 Missense_Mutation p.G201D 0.16 tolerated(0.09) benign(0.139) TCGA-CD-8535-01 9 139313586 139313586 G T PMPCA Intron 0.33 TCGA-CD-8535-01 9 35811809 35811809 C T SPAG8 Silent p.A78A 0.32 TCGA-CD-8535-01 9 77454993 77454993 A C TRPM6 Missense_Mutation p.V164G 0.43 deleterious(0) possibly_damaging(0.701) TCGA-CD-8535-01 9 88203282 88203282 T G AGTPBP1 Missense_Mutation p.Q905P 0.20 deleterious(0.02) possibly_damaging(0.81) TCGA-CD-8535-01 9 91616715 91616715 C T S1PR3 Silent p.C200C 0.19 TCGA-CD-8535-01 9 95400381 95400381 G A IPPK Missense_Mutation p.S273L 0.20 tolerated(0.24) benign(0.311) TCGA-CD-8535-01 X 100177864 100177864 G A XKRX Silent p.I174I 0.39 TCGA-CD-8535-01 X 107936061 107936061 A G COL4A5 Missense_Mutation p.R1538G 0.53 probably_damaging(1) TCGA-CD-8535-01 X 120009284 120009284 C T CT47B1 Missense_Mutation p.A81T 0.50 tolerated(0.29) benign(0.089) TCGA-CD-8535-01 X 125298575 125298575 C G DCAF12L2 Missense_Mutation p.V445L 0.38 deleterious(0.01) benign(0.391) TCGA-CD-8535-01 X 129629682 129629682 G A RP1-274L7.1 Intron 0.50 TCGA-CD-8535-01 X 136652394 136652394 A G ZIC3 3'UTR 0.28 TCGA-CD-8535-01 X 150840247 150840247 A C PASD1 Missense_Mutation p.N478T 0.59 tolerated(0.57) benign(0.012) TCGA-CD-8535-01 X 152915673 152915674 - G DUSP9 Frame_Shift_Ins p.Q359Afs*18 0.32 TCGA-CD-8535-01 X 2406722 2406722 C A ZBED1 Missense_Mutation p.G680V 0.10 tolerated_low_confidence(0.28) benign(0.001) TCGA-CD-8535-01 X 32490353 32490353 T C DMD Silent p.E959E 0.45 TCGA-CD-8535-01 X 48754135 48754135 C T TIMM17B Nonsense_Mutation p.W11* 0.40 TCGA-CD-8535-01 X 53610583 53610583 G A HUWE1 Silent p.L1819L 0.62 TCGA-CD-8535-01 X 55513611 55513611 A C USP51 Missense_Mutation p.L588V 0.41 deleterious(0.01) probably_damaging(0.973) TCGA-CD-8535-01 X 76937769 76937770 - T ATRX Frame_Shift_Ins p.K994Efs*6 0.43 TCGA-CD-8535-01 X 78011422 78011422 A C LPAR4 Missense_Mutation p.E352D 0.50 tolerated_low_confidence(0.48) benign(0.001) TCGA-CD-8535-01 X 82763585 82763585 C T POU3F4 Missense_Mutation p.R85C 0.50 deleterious(0) possibly_damaging(0.899) TCGA-CD-8535-01 X 83129336 83129336 T - CYLC1 Frame_Shift_Del p.S541Qfs*127 0.24 TCGA-CD-8536-01 10 100018971 100018971 G A LOXL4 Missense_Mutation p.T239M 0.24 tolerated(0.05) benign(0.376) TCGA-CD-8536-01 10 104436693 104436693 G A ARL3 Silent p.G169G 0.11 TCGA-CD-8536-01 10 105048194 105048194 C T INA Missense_Mutation p.P423L 0.20 tolerated(0.2) benign(0.009) TCGA-CD-8536-01 10 105185237 105185237 C T PDCD11 Missense_Mutation p.T1087M 0.16 deleterious(0.04) possibly_damaging(0.749) TCGA-CD-8536-01 10 105209748 105209748 G A CALHM2 5'UTR 0.27 TCGA-CD-8536-01 10 105362219 105362219 T C SH3PXD2A Missense_Mutation p.N891S 0.23 tolerated(0.41) benign(0.004) TCGA-CD-8536-01 10 105778621 105778621 T C SLK Silent p.D1029D 0.24 TCGA-CD-8536-01 10 106075728 106075728 C T ITPRIP Missense_Mutation p.A28T 0.22 tolerated(0.67) benign(0.01) TCGA-CD-8536-01 10 108336956 108336957 - T SORCS1 3'Flank 0.29 TCGA-CD-8536-01 10 112057440 112057440 C T SMNDC1 Missense_Mutation p.A104T 0.21 deleterious(0.05) possibly_damaging(0.686) TCGA-CD-8536-01 10 11505520 11505520 G A USP6NL Silent p.A486A 0.22 TCGA-CD-8536-01 10 115413830 115413830 G A NRAP Missense_Mutation p.P139S 0.21 tolerated(0.25) benign(0.176) TCGA-CD-8536-01 10 115609927 115609927 C T DCLRE1A Missense_Mutation p.D313N 0.20 tolerated(0.25) benign(0.005) TCGA-CD-8536-01 10 116702490 116702490 C T TRUB1 Nonsense_Mutation p.R125* 0.23 TCGA-CD-8536-01 10 121663791 121663791 T C SEC23IP Splice_Site p.X367_splice 0.32 TCGA-CD-8536-01 10 124345759 124345759 G A DMBT1 Missense_Mutation p.R548Q 0.20 tolerated(0.37) unknown(0) TCGA-CD-8536-01 10 124758127 124758127 T - IKZF5 Frame_Shift_Del p.K5Nfs*8 0.27 TCGA-CD-8536-01 10 125805647 125805647 G - CHST15 Frame_Shift_Del p.H28Ifs*25 0.15 TCGA-CD-8536-01 10 131636183 131636183 C A EBF3 3'UTR 0.18 TCGA-CD-8536-01 10 131638585 131638585 G A EBF3 Silent p.S516S 0.22 TCGA-CD-8536-01 10 21076218 21076218 G T NEBL Silent p.A927A 0.21 TCGA-CD-8536-01 10 23270360 23270360 T C ARMC3 Silent p.A336A 0.20 TCGA-CD-8536-01 10 23287195 23287195 C T ARMC3 Missense_Mutation p.R432C 0.39 deleterious(0.01) benign(0.149) TCGA-CD-8536-01 10 26575385 26575385 G A GAD2 Missense_Mutation p.V450I 0.24 tolerated(0.12) probably_damaging(0.93) TCGA-CD-8536-01 10 32101710 32101710 T - ARHGAP12 Frame_Shift_Del p.T626Pfs*5 0.21 TCGA-CD-8536-01 10 46121887 46121887 G A ZFAND4 Missense_Mutation p.R462W 0.21 deleterious(0.02) possibly_damaging(0.891) TCGA-CD-8536-01 10 48414338 48414338 T C GDF2 Missense_Mutation p.D177G 0.17 deleterious(0.05) benign(0.133) TCGA-CD-8536-01 10 48429272 48429272 T C GDF10 Missense_Mutation p.D205G 0.25 deleterious(0) probably_damaging(1) TCGA-CD-8536-01 10 6274980 6274980 C T PFKFB3 3'UTR 0.20 TCGA-CD-8536-01 10 68687965 68687965 G A LRRTM3 Missense_Mutation p.V431M 0.24 tolerated(0.09) possibly_damaging(0.838) TCGA-CD-8536-01 10 71008298 71008298 C T HKDC1 Missense_Mutation p.R462C 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-CD-8536-01 10 71026558 71026558 T - HKDC1 3'UTR 0.19 TCGA-CD-8536-01 10 71142350 71142350 C T HK1 Missense_Mutation p.A462V 0.21 deleterious(0) probably_damaging(1) TCGA-CD-8536-01 10 73455252 73455252 G T CDH23 Missense_Mutation p.E381D 0.13 deleterious(0) probably_damaging(0.91) TCGA-CD-8536-01 10 74879812 74879813 - A NUDT13 Frame_Shift_Ins p.A43Sfs*12 0.24 TCGA-CD-8536-01 10 75003276 75003277 CT - DNAJC9 Frame_Shift_Del p.S222Qfs*56 0.22 TCGA-CD-8536-01 10 75408298 75408298 C A SYNPO2L Missense_Mutation p.G371V 0.22 deleterious(0.04) benign(0.063) TCGA-CD-8536-01 10 75553466 75553466 C - ZSWIM8 Frame_Shift_Del p.P813Lfs*22 0.24 TCGA-CD-8536-01 10 88992543 88992544 - C NUTM2A Frame_Shift_Ins p.E515Rfs*53 0.08 TCGA-CD-8536-01 10 91497815 91497815 A - KIF20B Frame_Shift_Del p.S1035Vfs*18 0.19 TCGA-CD-8536-01 11 1018609 1018612 TGTA - MUC6 Frame_Shift_Del p.Y1397Qfs*58 0.23 TCGA-CD-8536-01 11 102953514 102953515 - A DCUN1D5 Frame_Shift_Ins p.T102Yfs*15 0.25 TCGA-CD-8536-01 11 103907674 103907674 G A DDI1 Missense_Mutation p.V42I 0.19 deleterious(0.04) benign(0.041) TCGA-CD-8536-01 11 103907993 103907993 G A DDI1 Missense_Mutation p.S148N 0.24 tolerated(0.11) benign(0.002) TCGA-CD-8536-01 11 107219737 107219738 - C CWF19L2 Frame_Shift_Ins p.H710Afs*11 0.18 TCGA-CD-8536-01 11 108381751 108381751 T - EXPH5 Frame_Shift_Del p.M1495* 0.08 TCGA-CD-8536-01 11 1086397 1086397 C T MUC2 Missense_Mutation p.P1036S 0.14 probably_damaging(1) TCGA-CD-8536-01 11 1090843 1090843 C T MUC2 Silent p.N1246N 0.26 TCGA-CD-8536-01 11 110451712 110451712 C T ARHGAP20 Missense_Mutation p.R653Q 0.23 tolerated(0.62) benign(0.001) TCGA-CD-8536-01 11 111594401 111594401 G A SIK2 Missense_Mutation p.V777I 0.20 deleterious_low_confidence(0.04) benign(0.225) TCGA-CD-8536-01 11 118253321 118253321 T G UBE4A Missense_Mutation p.L683R 0.26 deleterious(0) probably_damaging(1) TCGA-CD-8536-01 11 124756498 124756498 C T ROBO4 Missense_Mutation p.A886T 0.21 tolerated(0.58) possibly_damaging(0.499) TCGA-CD-8536-01 11 125499188 125499188 G T CHEK1 Silent p.G117G 0.18 TCGA-CD-8536-01 11 126276430 126276430 C T ST3GAL4 Missense_Mutation p.R27W 0.21 tolerated_low_confidence(0.06) benign(0.013) TCGA-CD-8536-01 11 1276324 1276324 G A MUC5B Missense_Mutation p.A5240T 0.17 unknown(0) TCGA-CD-8536-01 11 128354758 128354758 G A ETS1 Silent p.V274V 0.18 TCGA-CD-8536-01 11 12958830 12958830 A T TEAD1 3'UTR 0.15 TCGA-CD-8536-01 11 14539248 14539248 T C PSMA1 Missense_Mutation p.H71R 0.17 tolerated(0.61) benign(0) TCGA-CD-8536-01 11 19256297 19256297 G A E2F8 Missense_Mutation p.R254W 0.16 deleterious(0) probably_damaging(0.998) TCGA-CD-8536-01 11 20139919 20139919 C T NAV2 3'UTR 0.21 TCGA-CD-8536-01 11 308304 308304 G T IFITM2 Missense_Mutation p.A38S 0.07 deleterious(0.03) possibly_damaging(0.792) TCGA-CD-8536-01 11 30926560 30926560 T - DCDC1 Frame_Shift_Del p.N1419Mfs*10 0.09 TCGA-CD-8536-01 11 4608694 4608694 G T OR52I2 Missense_Mutation p.A218S 0.22 tolerated(0.11) possibly_damaging(0.458) TCGA-CD-8536-01 11 46568662 46568662 C T AMBRA1 Splice_Site p.X126_splice 0.23 TCGA-CD-8536-01 11 46625117 46625117 C T HARBI1 Missense_Mutation p.R338H 0.11 tolerated(0.32) benign(0.003) TCGA-CD-8536-01 11 48238420 48238420 C T OR4B1 Missense_Mutation p.A20V 0.21 tolerated(0.11) benign(0.053) TCGA-CD-8536-01 11 48239022 48239022 G T OR4B1 Missense_Mutation p.V221F 0.15 tolerated(0.52) benign(0.03) TCGA-CD-8536-01 11 4824881 4824881 G A OR52R1 Missense_Mutation p.R244C 0.21 tolerated(1) benign(0) TCGA-CD-8536-01 11 49229968 49229968 G A FOLH1 5'UTR 0.25 TCGA-CD-8536-01 11 4944809 4944809 T C OR51G1 Missense_Mutation p.Y254C 0.27 deleterious(0) probably_damaging(0.928) TCGA-CD-8536-01 11 5411573 5411573 T C OR51M1 Silent p.I315I 0.17 TCGA-CD-8536-01 11 5536502 5536502 C T UBQLNL Silent p.Q390Q 0.27 TCGA-CD-8536-01 11 55735257 55735257 G A OR10AG1 Missense_Mutation p.A228V 0.30 deleterious(0.02) possibly_damaging(0.715) TCGA-CD-8536-01 11 55944532 55944532 G T OR5J2 Nonsense_Mutation p.G147* 0.20 TCGA-CD-8536-01 11 56043969 56043969 A G OR5T1 Missense_Mutation p.I285M 0.23 tolerated(0.48) benign(0.189) TCGA-CD-8536-01 11 5624939 5624939 G A TRIM6 Missense_Mutation p.V161M 0.28 tolerated(1) benign(0.021) TCGA-CD-8536-01 11 57070218 57070219 - T TNKS1BP1 Frame_Shift_Ins p.A1467Gfs*46 0.30 TCGA-CD-8536-01 11 57569588 57569589 - A CTNND1 Frame_Shift_Ins p.N449Kfs*3 0.25 TCGA-CD-8536-01 11 58980175 58980175 C T MPEG1 Missense_Mutation p.R55Q 0.19 deleterious(0.05) benign(0.16) TCGA-CD-8536-01 11 60718798 60718798 C T SLC15A3 Missense_Mutation p.A76T 0.23 tolerated(0.44) benign(0.004) TCGA-CD-8536-01 11 61091539 61091539 C T DDB1 Missense_Mutation p.G278D 0.19 deleterious(0) probably_damaging(1) TCGA-CD-8536-01 11 62381298 62381298 G T ROM1 Missense_Mutation p.W182L 0.23 deleterious(0) probably_damaging(0.999) TCGA-CD-8536-01 11 64033379 64033379 G T PLCB3 Missense_Mutation p.E1019D 0.31 tolerated(0.51) benign(0.002) TCGA-CD-8536-01 11 64428312 64428312 G A NRXN2 Missense_Mutation p.R700C 0.18 tolerated(0.12) possibly_damaging(0.861) TCGA-CD-8536-01 11 64521044 64521044 C T PYGM Silent p.S450S 0.39 TCGA-CD-8536-01 11 64533508 64533508 G A SF1 Intron 0.19 TCGA-CD-8536-01 11 64603962 64603962 C - CDC42BPG Frame_Shift_Del p.P477Qfs*67 0.17 TCGA-CD-8536-01 11 64893451 64893451 A C MRPL49 3'UTR 0.18 TCGA-CD-8536-01 11 65303573 65303573 C T SCYL1 Silent p.C512C 0.07 TCGA-CD-8536-01 11 65408600 65408600 G A SIPA1 Missense_Mutation p.A70T 0.28 tolerated(0.15) benign(0.194) TCGA-CD-8536-01 11 66061883 66061883 G A TMEM151A Missense_Mutation p.G56R 0.27 deleterious(0) possibly_damaging(0.781) TCGA-CD-8536-01 11 66638824 66638824 C A PC Missense_Mutation p.G150V 0.21 deleterious(0) probably_damaging(0.995) TCGA-CD-8536-01 11 6789734 6789734 G A OR2AG2 Missense_Mutation p.A152V 0.22 deleterious(0.01) probably_damaging(0.952) TCGA-CD-8536-01 11 68029106 68029107 - C C11orf24 3'UTR 0.20 TCGA-CD-8536-01 11 68125148 68125148 G A LRP5 Silent p.T173T 0.12 TCGA-CD-8536-01 11 68131241 68131241 C T LRP5 Missense_Mutation p.T238M 0.17 tolerated(0.06) benign(0.104) TCGA-CD-8536-01 11 68579908 68579908 G A CPT1A Missense_Mutation p.T93M 0.18 tolerated(0.23) benign(0.018) TCGA-CD-8536-01 11 69063152 69063152 C T MYEOV Missense_Mutation p.R79C 0.23 deleterious_low_confidence(0.02) benign(0.001) TCGA-CD-8536-01 11 71948520 71948520 C T INPPL1 Missense_Mutation p.R1078W 0.07 deleterious(0.02) possibly_damaging(0.689) TCGA-CD-8536-01 11 72415237 72415237 C T ARAP1 Missense_Mutation p.R651H 0.12 tolerated(0.1) benign(0.056) TCGA-CD-8536-01 11 76909568 76909568 C T MYO7A Silent p.I1490I 0.10 TCGA-CD-8536-01 11 83676478 83676479 CG - DLG2 Frame_Shift_Del p.H363Qfs*28 0.16 TCGA-CD-8536-01 11 85967554 85967554 G T EED Missense_Mutation p.K184N 0.18 tolerated(0.07) possibly_damaging(0.573) TCGA-CD-8536-01 11 9077443 9077443 G A SCUBE2 Silent p.C368C 0.20 TCGA-CD-8536-01 11 9861049 9861049 G A SBF2 Missense_Mutation p.R1151W 0.23 deleterious(0) probably_damaging(0.991) TCGA-CD-8536-01 12 10167893 10167893 A - CLEC12B Frame_Shift_Del p.N152Ifs*22 0.18 TCGA-CD-8536-01 12 102155452 102155452 G A GNPTAB Silent p.L935L 0.23 TCGA-CD-8536-01 12 10324632 10324632 A G OLR1 Silent p.P15P 0.10 TCGA-CD-8536-01 12 106532344 106532344 C - NUAK1 Frame_Shift_Del p.A30Rfs*13 0.25 TCGA-CD-8536-01 12 108642124 108642124 G A WSCD2 3'UTR 0.15 TCGA-CD-8536-01 12 110977670 110977670 T C PPTC7 Missense_Mutation p.N228S 0.19 deleterious(0) probably_damaging(0.996) TCGA-CD-8536-01 12 113496119 113496119 C T DTX1 Missense_Mutation p.T41M 0.23 deleterious(0) possibly_damaging(0.603) TCGA-CD-8536-01 12 113629275 113629275 C T RITA1 Missense_Mutation p.R155C 0.27 tolerated(0.17) benign(0.187) TCGA-CD-8536-01 12 117962752 117962752 C A KSR2 Missense_Mutation p.K708N 0.12 deleterious(0) probably_damaging(0.999) TCGA-CD-8536-01 12 118588772 118588772 T C TAOK3 3'UTR 0.23 TCGA-CD-8536-01 12 120583065 120583065 C G GCN1L1 Splice_Site p.X1672_splice 0.14 TCGA-CD-8536-01 12 122359526 122359526 G A WDR66 Silent p.A105A 0.17 TCGA-CD-8536-01 12 124333389 124333389 C T DNAH10 Missense_Mutation p.T1903M 0.24 probably_damaging(0.967) TCGA-CD-8536-01 12 12814274 12814274 T - GPR19 Frame_Shift_Del p.N370Tfs*59 0.25 TCGA-CD-8536-01 12 130921759 130921759 G A RIMBP2 Silent p.G561G 0.18 TCGA-CD-8536-01 12 132393282 132393282 G A ULK1 Missense_Mutation p.R137H 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-CD-8536-01 12 132505665 132505665 G A EP400 Missense_Mutation p.A1497T 0.18 unknown(0) TCGA-CD-8536-01 12 18872468 18872468 C A PLCZ1 Missense_Mutation p.D156Y 0.17 deleterious(0) probably_damaging(0.96) TCGA-CD-8536-01 12 21997454 21997454 A G ABCC9 Missense_Mutation p.L1093P 0.21 deleterious(0) probably_damaging(0.951) TCGA-CD-8536-01 12 22035766 22035766 G A ABCC9 Silent p.H651H 0.20 TCGA-CD-8536-01 12 22063767 22063767 G A ABCC9 Missense_Mutation p.A386V 0.25 deleterious(0) possibly_damaging(0.482) TCGA-CD-8536-01 12 24989456 24989456 C T BCAT1 Missense_Mutation p.A310T 0.22 tolerated(0.19) benign(0.024) TCGA-CD-8536-01 12 26731711 26731711 C T ITPR2 Missense_Mutation p.C1522Y 0.26 deleterious(0) possibly_damaging(0.862) TCGA-CD-8536-01 12 26749901 26749901 T - ITPR2 Frame_Shift_Del p.N1390Mfs*17 0.20 TCGA-CD-8536-01 12 40697957 40697957 T C LRRK2 Intron 0.22 TCGA-CD-8536-01 12 46246049 46246049 T G ARID2 Silent p.T1381T 0.35 TCGA-CD-8536-01 12 49399287 49399287 G A PRKAG1 Nonsense_Mutation p.R70* 0.22 TCGA-CD-8536-01 12 49743389 49743389 T C DNAJC22 Missense_Mutation p.L245P 0.19 deleterious(0) probably_damaging(0.94) TCGA-CD-8536-01 12 50452586 50452586 G A ASIC1 Missense_Mutation p.V13I 0.23 tolerated(0.23) benign(0.04) TCGA-CD-8536-01 12 50503231 50503231 A G GPD1 Missense_Mutation p.K327E 0.08 tolerated(0.4) benign(0.003) TCGA-CD-8536-01 12 52285024 52285024 C T ANKRD33 Nonsense_Mutation p.R432* 0.27 TCGA-CD-8536-01 12 52309066 52309066 C T ACVRL1 Missense_Mutation p.T277M 0.18 deleterious(0.04) probably_damaging(1) TCGA-CD-8536-01 12 53777399 53777399 T C SP1 Silent p.N556N 0.17 TCGA-CD-8536-01 12 54687063 54687063 C A NFE2 Missense_Mutation p.D73Y 0.20 tolerated(0.11) possibly_damaging(0.725) TCGA-CD-8536-01 12 55356993 55356993 G A TESPA1 Missense_Mutation p.T230I 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-CD-8536-01 12 56348131 56348131 C T PMEL Missense_Mutation p.R625H 0.19 tolerated(0.11) benign(0.043) TCGA-CD-8536-01 12 56514705 56514705 C T ZC3H10 Missense_Mutation p.A120V 0.19 tolerated(0.1) possibly_damaging(0.824) TCGA-CD-8536-01 12 56712173 56712173 C T PAN2 Missense_Mutation p.R1141H 0.14 deleterious(0.02) probably_damaging(0.973) TCGA-CD-8536-01 12 57110007 57110007 C T NACA Intron 0.19 TCGA-CD-8536-01 12 57864501 57864501 C A GLI1 Missense_Mutation p.L660M 0.21 tolerated(0.34) probably_damaging(0.998) TCGA-CD-8536-01 12 57921002 57921002 C - MBD6 Frame_Shift_Del p.Q694Sfs*5 0.30 TCGA-CD-8536-01 12 58005683 58005683 G A ARHGEF25 Intron 0.26 TCGA-CD-8536-01 12 58121705 58121705 A G AGAP2-AS1 3'UTR 0.12 TCGA-CD-8536-01 12 66773137 66773137 T C GRIP1 Silent p.P796P 0.21 TCGA-CD-8536-01 12 6858098 6858098 G A MLF2 Missense_Mutation p.R204W 0.33 deleterious(0.02) benign(0.446) TCGA-CD-8536-01 12 6935984 6935984 G A GPR162 Missense_Mutation p.R461K 0.13 tolerated(0.16) benign(0.084) TCGA-CD-8536-01 12 7063999 7063999 G A PTPN6 Missense_Mutation p.A120T 0.30 deleterious(0) probably_damaging(0.995) TCGA-CD-8536-01 12 75807475 75807475 C T GLIPR1L2 Missense_Mutation p.A193V 0.20 tolerated(0.05) possibly_damaging(0.813) TCGA-CD-8536-01 12 7637821 7637821 T C CD163 Missense_Mutation p.M884V 0.22 tolerated(0.49) benign(0.001) TCGA-CD-8536-01 12 78360045 78360045 G T NAV3 Missense_Mutation p.A151S 0.21 deleterious(0) possibly_damaging(0.45) TCGA-CD-8536-01 12 88524079 88524079 T - CEP290 Frame_Shift_Del p.N212Tfs*14 0.19 TCGA-CD-8536-01 12 94673302 94673302 C T PLXNC1 Missense_Mutation p.R1218W 0.18 deleterious(0.01) probably_damaging(0.996) TCGA-CD-8536-01 12 95419000 95419001 TA - NR2C1 Frame_Shift_Del p.I521Rfs*22 0.21 TCGA-CD-8536-01 12 96374631 96374631 G A HAL Missense_Mutation p.A433V 0.20 tolerated(0.19) benign(0.038) TCGA-CD-8536-01 13 100925452 100925452 T - PCCA Frame_Shift_Del p.L308Wfs*14 0.27 TCGA-CD-8536-01 13 115010376 115010376 A G CDC16 Missense_Mutation p.K260R 0.17 tolerated(0.26) benign(0.001) TCGA-CD-8536-01 13 23911828 23911829 - A SACS Frame_Shift_Ins p.P2063Sfs*7 0.22 TCGA-CD-8536-01 13 26956961 26956961 A T CDK8 Missense_Mutation p.N156I 0.26 deleterious(0) probably_damaging(1) TCGA-CD-8536-01 13 28854577 28854577 C T PAN3 Nonsense_Mutation p.R740* 0.27 TCGA-CD-8536-01 13 36049748 36049748 G A MAB21L1 Silent p.C176C 0.25 TCGA-CD-8536-01 13 36748981 36748981 G T SOHLH2 Missense_Mutation p.Q300K 0.16 deleterious(0.01) probably_damaging(0.977) TCGA-CD-8536-01 13 40233534 40233534 T - COG6 Frame_Shift_Del p.F64Lfs*21 0.21 TCGA-CD-8536-01 13 46658415 46658416 - A CPB2 Frame_Shift_Ins p.V72Cfs*5 0.20 TCGA-CD-8536-01 13 48985758 48985758 C T LPAR6 Missense_Mutation p.A268T 0.21 tolerated(0.46) possibly_damaging(0.756) TCGA-CD-8536-01 13 52972169 52972169 A G THSD1 Silent p.T73T 0.18 TCGA-CD-8536-01 13 52989927 52989927 C T VPS36 3'UTR 0.21 TCGA-CD-8536-01 13 73329439 73329439 A G BORA 3'UTR 0.18 TCGA-CD-8536-01 13 77844149 77844149 T - MYCBP2 Frame_Shift_Del p.K375Sfs*4 0.20 TCGA-CD-8536-01 13 78477655 78477655 T A EDNRB Missense_Mutation p.S281C 0.21 deleterious(0) probably_damaging(0.987) TCGA-CD-8536-01 13 84453706 84453706 C T SLITRK1 Missense_Mutation p.R646Q 0.27 deleterious(0.02) probably_damaging(0.98) TCGA-CD-8536-01 13 86369500 86369500 C A SLITRK6 Missense_Mutation p.D382Y 0.25 deleterious(0) probably_damaging(0.957) TCGA-CD-8536-01 13 95095788 95095788 C T DCT Missense_Mutation p.R461Q 0.26 deleterious(0.03) benign(0.423) TCGA-CD-8536-01 13 96443359 96443359 A - DNAJC3 3'UTR 0.24 TCGA-CD-8536-01 13 97485217 97485217 G A HS6ST3 Missense_Mutation p.R394H 0.22 tolerated(0.19) probably_damaging(0.989) TCGA-CD-8536-01 14 100603983 100603983 T C EVL Splice_Site p.X344_splice 0.17 TCGA-CD-8536-01 14 101004414 101004414 A C BEGAIN Silent p.P558P 0.22 TCGA-CD-8536-01 14 102391579 102391579 C T PPP2R5C Silent p.A546A 0.20 TCGA-CD-8536-01 14 102483456 102483458 CTC - DYNC1H1 In_Frame_Del p.P2628del 0.13 TCGA-CD-8536-01 14 102891540 102891540 A G TECPR2 Missense_Mutation p.H288R 0.19 tolerated(0.07) benign(0.051) TCGA-CD-8536-01 14 103601646 103601646 G - TNFAIP2 Frame_Shift_Del p.A640Rfs*12 0.22 TCGA-CD-8536-01 14 22363085 22363085 G A TRAV8-4 Silent p.A72A 0.24 TCGA-CD-8536-01 14 23311785 23311785 G A MMP14 Missense_Mutation p.E183K 0.29 deleterious(0.05) possibly_damaging(0.895) TCGA-CD-8536-01 14 23897001 23897001 C T MYH7 Missense_Mutation p.A561T 0.17 tolerated(0.41) benign(0.382) TCGA-CD-8536-01 14 24550668 24550668 C T NRL Missense_Mutation p.R164H 0.25 deleterious(0) probably_damaging(0.999) TCGA-CD-8536-01 14 29237592 29237592 C T FOXG1 Silent p.N369N 0.16 TCGA-CD-8536-01 14 31856515 31856515 A - HEATR5A Frame_Shift_Del p.S41Lfs*4 0.18 TCGA-CD-8536-01 14 34985793 34985793 C A EAPP Splice_Site p.X194_splice 0.23 TCGA-CD-8536-01 14 50262535 50262535 C T NEMF Missense_Mutation p.V865M 0.19 tolerated(0.1) benign(0.03) TCGA-CD-8536-01 14 50626743 50626743 T - SOS2 Frame_Shift_Del p.M420* 0.14 TCGA-CD-8536-01 14 58895013 58895013 A - KIAA0586 Frame_Shift_Del p.K25Rfs*6 0.26 TCGA-CD-8536-01 14 61519066 61519066 G T SLC38A6 Intron 0.15 TCGA-CD-8536-01 14 64676097 64676097 C T SYNE2 Intron 0.22 TCGA-CD-8536-01 14 70235928 70235928 G A SRSF5 Missense_Mutation p.R109H 0.28 deleterious(0) probably_damaging(0.998) TCGA-CD-8536-01 14 71517457 71517457 C T PCNX Missense_Mutation p.A1476V 0.22 deleterious(0) probably_damaging(0.998) TCGA-CD-8536-01 14 74191999 74192001 CTT - ELMSAN1 In_Frame_Del p.K850del 0.26 TCGA-CD-8536-01 14 75134237 75134239 AGA - AREL1 In_Frame_Del p.F658del 0.21 TCGA-CD-8536-01 14 77948937 77948937 G - ISM2 Frame_Shift_Del p.P234Rfs*175 0.19 TCGA-CD-8536-01 14 92336515 92336517 CTC - FBLN5 3'UTR 0.26 TCGA-CD-8536-01 14 93119189 93119189 C T RIN3 Missense_Mutation p.R599C 0.17 deleterious(0) probably_damaging(0.999) TCGA-CD-8536-01 14 95884189 95884189 G A SYNE3 Missense_Mutation p.R968C 0.22 deleterious(0) probably_damaging(0.996) TCGA-CD-8536-01 15 100591781 100591781 G A ADAMTS17 Silent p.G817G 0.15 TCGA-CD-8536-01 15 23687647 23687647 C A GOLGA6L2 Missense_Mutation p.E200D 0.19 benign(0.198) TCGA-CD-8536-01 15 33765705 33765705 G A RYR3 Missense_Mutation p.R46H 0.23 probably_damaging(0.982) TCGA-CD-8536-01 15 34110852 34110852 T C RYR3 Missense_Mutation p.L3558P 0.27 possibly_damaging(0.899) TCGA-CD-8536-01 15 34549916 34549916 A - SLC12A6 Frame_Shift_Del p.L206Yfs*28 0.22 TCGA-CD-8536-01 15 35086888 35086888 C T ACTC1 Missense_Mutation p.R41Q 0.13 deleterious_low_confidence(0.04) possibly_damaging(0.787) TCGA-CD-8536-01 15 39874882 39874882 G A THBS1 Missense_Mutation p.V186I 0.21 tolerated(1) benign(0) TCGA-CD-8536-01 15 40565645 40565645 A G PAK6 Missense_Mutation p.D530G 0.28 deleterious(0) probably_damaging(0.982) TCGA-CD-8536-01 15 41377755 41377755 T - INO80 Frame_Shift_Del p.R229Dfs*45 0.26 TCGA-CD-8536-01 15 42442631 42442632 - C PLA2G4F Frame_Shift_Ins p.I276Hfs*44 0.14 TCGA-CD-8536-01 15 43815956 43815956 G A MAP1A Missense_Mutation p.R762H 0.12 probably_damaging(0.999) TCGA-CD-8536-01 15 43827565 43827565 G A PPIP5K1 Silent p.H1203H 0.17 TCGA-CD-8536-01 15 45007740 45007740 G T B2M Nonsense_Mutation p.G63* 0.25 TCGA-CD-8536-01 15 48522654 48522654 T C SLC12A1 Missense_Mutation p.V310A 0.21 tolerated(0.15) possibly_damaging(0.791) TCGA-CD-8536-01 15 50578203 50578203 A - GABPB1 Intron 0.32 TCGA-CD-8536-01 15 53049637 53049637 T - ONECUT1 3'Flank 0.35 TCGA-CD-8536-01 15 59146784 59146784 A - FAM63B Frame_Shift_Del p.N616Ifs*41 0.22 TCGA-CD-8536-01 15 60740216 60740216 T C NARG2 Missense_Mutation p.R750G 0.23 deleterious(0) possibly_damaging(0.765) TCGA-CD-8536-01 15 64020012 64020012 G A HERC1 Silent p.G1060G 0.26 TCGA-CD-8536-01 15 72953615 72953615 G A GOLGA6B Missense_Mutation p.C192Y 0.05 tolerated(1) possibly_damaging(0.588) TCGA-CD-8536-01 15 73617684 73617684 G A HCN4 Silent p.F564F 0.24 TCGA-CD-8536-01 15 74628217 74628218 - C CCDC33 Intron 0.20 TCGA-CD-8536-01 15 75631397 75631397 G A COMMD4 Missense_Mutation p.D85N 0.25 tolerated(0.06) possibly_damaging(0.864) TCGA-CD-8536-01 15 77473383 77473383 G A PEAK1 Silent p.L296L 0.23 TCGA-CD-8536-01 15 78778082 78778082 C T IREB2 Missense_Mutation p.R537C 0.22 tolerated(0.08) benign(0.002) TCGA-CD-8536-01 15 80412779 80412779 A G ZFAND6 Silent p.S31S 0.25 TCGA-CD-8536-01 15 83215935 83215935 G A CPEB1 Silent p.S484S 0.25 TCGA-CD-8536-01 15 83456139 83456139 C G FSD2 Missense_Mutation p.E2Q 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.638) TCGA-CD-8536-01 15 83926569 83926569 G A BNC1 Silent p.S870S 0.07 TCGA-CD-8536-01 15 86123308 86123309 AC - AKAP13 Frame_Shift_Del p.T671Sfs*4 0.13 TCGA-CD-8536-01 15 89844613 89844613 C T FANCI Silent p.A982A 0.23 TCGA-CD-8536-01 15 93609147 93609147 G A RGMA Intron 0.24 TCGA-CD-8536-01 16 10626816 10626816 G A EMP2 Silent p.F150F 0.23 TCGA-CD-8536-01 16 11374757 11374757 T C PRM1 3'UTR 0.21 TCGA-CD-8536-01 16 15129376 15129376 G A PDXDC1 Silent p.T691T 0.12 TCGA-CD-8536-01 16 16248503 16248503 T C ABCC6 Missense_Mutation p.D1397G 0.17 deleterious(0.04) benign(0.022) TCGA-CD-8536-01 16 19056283 19056283 A T TMC7 Missense_Mutation p.D472V 0.26 tolerated(0.05) benign(0.04) TCGA-CD-8536-01 16 20043389 20043389 G - GPR139 Frame_Shift_Del p.R244Afs*4 0.27 TCGA-CD-8536-01 16 20335551 20335551 G A GP2 Missense_Mutation p.S41L 0.25 deleterious(0) possibly_damaging(0.505) TCGA-CD-8536-01 16 20480900 20480900 C A ACSM2A Missense_Mutation p.S152Y 0.22 deleterious(0) probably_damaging(1) TCGA-CD-8536-01 16 21663943 21663943 G - IGSF6 5'UTR 0.17 TCGA-CD-8536-01 16 24965987 24965987 G A ARHGAP17 Silent p.R263R 0.23 TCGA-CD-8536-01 16 27501011 27501011 C T GTF3C1 Missense_Mutation p.D1069N 0.19 tolerated(0.11) benign(0.124) TCGA-CD-8536-01 16 27506648 27506648 G A GTF3C1 Missense_Mutation p.A839V 0.17 tolerated(0.31) benign(0.001) TCGA-CD-8536-01 16 28884771 28884771 C T SH2B1 Missense_Mutation p.P634L 0.21 tolerated(0.15) benign(0) TCGA-CD-8536-01 16 28914166 28914166 C - ATP2A1 Frame_Shift_Del p.E895Sfs*3 0.20 TCGA-CD-8536-01 16 29891310 29891310 G T SEZ6L2 Missense_Mutation p.P483Q 0.20 deleterious(0) possibly_damaging(0.532) TCGA-CD-8536-01 16 30129770 30129770 T C MAPK3 Missense_Mutation p.Y148C 0.18 deleterious(0) probably_damaging(1) TCGA-CD-8536-01 16 30664413 30664413 C - PRR14 Frame_Shift_Del p.A167Lfs*21 0.13 TCGA-CD-8536-01 16 30724848 30724848 G A SRCAP Missense_Mutation p.R770H 0.22 unknown(0) TCGA-CD-8536-01 16 30783165 30783165 C T RNF40 Silent p.A866A 0.18 TCGA-CD-8536-01 16 31088710 31088710 G A ZNF646 Silent p.A355A 0.30 TCGA-CD-8536-01 16 31391130 31391130 C A ITGAX Missense_Mutation p.P974H 0.26 deleterious(0) probably_damaging(1) TCGA-CD-8536-01 16 336417 336417 G A PDIA2 Missense_Mutation p.G395D 0.16 deleterious(0) probably_damaging(0.977) TCGA-CD-8536-01 16 3736090 3736090 T - TRAP1 Frame_Shift_Del p.K126Nfs*38 0.14 TCGA-CD-8536-01 16 4487404 4487404 T C DNAJA3 Missense_Mutation p.L116P 0.25 deleterious(0) probably_damaging(0.961) TCGA-CD-8536-01 16 52497931 52497931 G - TOX3 Frame_Shift_Del p.P108Lfs*45 0.19 TCGA-CD-8536-01 16 55362817 55362817 C T IRX6 Silent p.C309C 0.17 TCGA-CD-8536-01 16 55616996 55616996 A - LPCAT2 Frame_Shift_Del p.D543Mfs*17 0.12 TCGA-CD-8536-01 16 57059720 57059720 G A NLRC5 Missense_Mutation p.D289N 0.25 deleterious(0) possibly_damaging(0.746) TCGA-CD-8536-01 16 57609003 57609003 C T GPR114 Silent p.Y495Y 0.16 TCGA-CD-8536-01 16 57994755 57994756 - G CNGB1 Frame_Shift_Ins p.K175Qfs*4 0.21 TCGA-CD-8536-01 16 58019124 58019124 G A TEPP Missense_Mutation p.G214S 0.12 tolerated(0.09) benign(0.087) TCGA-CD-8536-01 16 58030956 58030956 T C ZNF319 Missense_Mutation p.Q405R 0.21 tolerated(0.51) possibly_damaging(0.801) TCGA-CD-8536-01 16 58048222 58048222 G T USB1 Missense_Mutation p.E165D 0.22 tolerated(0.06) possibly_damaging(0.732) TCGA-CD-8536-01 16 58200504 58200504 T C CSNK2A2 Missense_Mutation p.N271D 0.21 tolerated(1) benign(0.008) TCGA-CD-8536-01 16 61935344 61935344 T - CDH8 Frame_Shift_Del p.I96Sfs*16 0.21 TCGA-CD-8536-01 16 66436824 66436824 G A CDH5 Missense_Mutation p.G703R 0.26 tolerated(0.18) possibly_damaging(0.751) TCGA-CD-8536-01 16 67199720 67199720 G A HSF4 Missense_Mutation p.E111K 0.26 deleterious(0) possibly_damaging(0.673) TCGA-CD-8536-01 16 67681263 67681263 T C RLTPR Missense_Mutation p.L250P 0.29 deleterious(0) probably_damaging(0.997) TCGA-CD-8536-01 16 68266678 68266678 G A ESRP2 Silent p.Y232Y 0.21 TCGA-CD-8536-01 16 70605703 70605703 G A SF3B3 Missense_Mutation p.R1214H 0.30 deleterious(0) probably_damaging(0.932) TCGA-CD-8536-01 16 71411638 71411638 C T CALB2 Silent p.A110A 0.21 TCGA-CD-8536-01 16 71683913 71683913 C T PHLPP2 Missense_Mutation p.R951Q 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-CD-8536-01 16 732572 732572 G A JMJD8 3'UTR 0.26 TCGA-CD-8536-01 16 75147447 75147447 G A LDHD Missense_Mutation p.R381W 0.12 deleterious(0) probably_damaging(0.982) TCGA-CD-8536-01 16 7568167 7568167 G A RBFOX1 Missense_Mutation p.A36T 0.27 tolerated(0.11) possibly_damaging(0.629) TCGA-CD-8536-01 16 81410860 81410860 C T GAN Silent p.P513P 0.23 TCGA-CD-8536-01 16 816794 816794 C - MSLN Frame_Shift_Del p.S463Afs*33 0.22 TCGA-CD-8536-01 16 85813310 85813310 C A EMC8 3'UTR 0.18 TCGA-CD-8536-01 16 87636903 87636903 G A JPH3 Missense_Mutation p.G51S 0.30 deleterious(0) probably_damaging(0.999) TCGA-CD-8536-01 16 88014676 88014676 C T BANP Silent p.D35D 0.20 TCGA-CD-8536-01 16 88872202 88872202 C T CDT1 Missense_Mutation p.R253C 0.25 tolerated(0.05) benign(0.075) TCGA-CD-8536-01 16 89211763 89211763 C T ACSF3 Silent p.S485S 0.21 TCGA-CD-8536-01 17 10300185 10300185 G T MYH8 Missense_Mutation p.L1433I 0.23 tolerated(1) benign(0.003) TCGA-CD-8536-01 17 11648225 11648225 C T DNAH9 Missense_Mutation p.R2075W 0.20 probably_damaging(1) TCGA-CD-8536-01 17 16842874 16842874 C - TNFRSF13B Frame_Shift_Del p.G290Afs*34 0.18 TCGA-CD-8536-01 17 21825535 21825535 C T FAM27L RNA 0.20 TCGA-CD-8536-01 17 2607758 2607758 G A CLUH Silent p.A29A 0.29 TCGA-CD-8536-01 17 27890007 27890007 T - ABHD15 Frame_Shift_Del p.S327Afs*44 0.22 TCGA-CD-8536-01 17 29857481 29857481 C T RAB11FIP4 Silent p.R597R 0.19 TCGA-CD-8536-01 17 3301497 3301497 C A OR1E1 Missense_Mutation p.D70Y 0.25 deleterious(0) probably_damaging(0.992) TCGA-CD-8536-01 17 33738926 33738926 A G SLFN12 Missense_Mutation p.Y390H 0.04 tolerated(0.09) possibly_damaging(0.556) TCGA-CD-8536-01 17 36707581 36707581 C T SRCIN1 Silent p.Q924Q 0.32 TCGA-CD-8536-01 17 36997562 36997562 G A C17orf98 Silent p.R27R 0.24 TCGA-CD-8536-01 17 39041120 39041120 G A KRT20 Silent p.Y106Y 0.18 TCGA-CD-8536-01 17 39324352 39324352 A G KRTAP4-3 Missense_Mutation p.C25R 0.31 deleterious(0) unknown(0) TCGA-CD-8536-01 17 39784138 39784138 C A KRT17 5'Flank 0.16 TCGA-CD-8536-01 17 40695347 40695347 G A NAGLU Silent p.T441T 0.26 TCGA-CD-8536-01 17 41170633 41170633 T C VAT1 Missense_Mutation p.S191G 0.19 deleterious(0) possibly_damaging(0.852) TCGA-CD-8536-01 17 42931922 42931922 A G EFTUD2 Splice_Site p.X753_splice 0.19 TCGA-CD-8536-01 17 42992593 42992593 G A GFAP Missense_Mutation p.R88C 0.17 deleterious(0.01) probably_damaging(0.969) TCGA-CD-8536-01 17 43552532 43552532 T C PLEKHM1 Missense_Mutation p.E286G 0.24 deleterious(0) possibly_damaging(0.619) TCGA-CD-8536-01 17 4391167 4391167 G A SPNS3 Missense_Mutation p.G506D 0.19 tolerated_low_confidence(0.16) benign(0.003) TCGA-CD-8536-01 17 44109601 44109601 G - KANSL1 Frame_Shift_Del p.Q968Sfs*46 0.19 TCGA-CD-8536-01 17 44952694 44952694 G A WNT9B Missense_Mutation p.A188T 0.22 deleterious(0.01) probably_damaging(0.959) TCGA-CD-8536-01 17 46627823 46627823 G T HOXB3 Missense_Mutation p.P390H 0.24 deleterious(0.01) probably_damaging(0.95) TCGA-CD-8536-01 17 47699370 47699370 C A SPOP Missense_Mutation p.E46D 0.15 tolerated(0.27) benign(0.372) TCGA-CD-8536-01 17 48244792 48244792 G A SGCA Missense_Mutation p.R34H 0.20 tolerated(0.14) benign(0.052) TCGA-CD-8536-01 17 48545741 48545741 G A CHAD Missense_Mutation p.P145L 0.31 tolerated(0.9) probably_damaging(1) TCGA-CD-8536-01 17 50235244 50235244 C T CA10 5'UTR 0.11 TCGA-CD-8536-01 17 53040766 53040766 C T COX11 Silent p.A183A 0.28 TCGA-CD-8536-01 17 56676291 56676292 - C TEX14 Frame_Shift_Ins p.Q812Sfs*24 0.23 TCGA-CD-8536-01 17 56693683 56693683 G A TEX14 Missense_Mutation p.A213V 0.12 tolerated(0.43) benign(0.002) TCGA-CD-8536-01 17 59479238 59479239 - A TBX2 Frame_Shift_Ins p.Q198Afs*5 0.12 TCGA-CD-8536-01 17 61615495 61615495 G A KCNH6 Missense_Mutation p.R524H 0.38 deleterious(0) possibly_damaging(0.906) TCGA-CD-8536-01 17 61620958 61620959 - C KCNH6 Frame_Shift_Ins p.R726Pfs*16 0.21 TCGA-CD-8536-01 17 62081217 62081217 T C ICAM2 Missense_Mutation p.T146A 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-CD-8536-01 17 63554068 63554068 T C AXIN2 Missense_Mutation p.Y224C 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-CD-8536-01 17 65960510 65960510 G A BPTF Missense_Mutation p.R2815H 0.30 probably_damaging(0.96) TCGA-CD-8536-01 17 66864183 66864183 A - ABCA8 3'UTR 0.36 TCGA-CD-8536-01 17 6927450 6927450 C T BCL6B Silent p.D76D 0.24 TCGA-CD-8536-01 17 71166190 71166190 C T SSTR2 Silent p.S244S 0.22 TCGA-CD-8536-01 17 72541017 72541017 C G CD300C Missense_Mutation p.R44P 0.22 tolerated(0.18) benign(0.094) TCGA-CD-8536-01 17 72764841 72764841 C T SLC9A3R1 3'UTR 0.18 TCGA-CD-8536-01 17 73491063 73491063 C - KIAA0195 Frame_Shift_Del p.S895Pfs*13 0.23 TCGA-CD-8536-01 17 74006132 74006132 G A EVPL Missense_Mutation p.R1052W 0.22 deleterious(0) possibly_damaging(0.667) TCGA-CD-8536-01 17 74057235 74057235 A G SRP68 Missense_Mutation p.V237A 0.07 deleterious(0) possibly_damaging(0.868) TCGA-CD-8536-01 17 7554780 7554780 G A ATP1B2 5'UTR 0.30 TCGA-CD-8536-01 17 7750590 7750590 C T KDM6B Silent p.D359D 0.23 TCGA-CD-8536-01 17 7798346 7798346 G A CHD3 Missense_Mutation p.V520I 0.21 benign(0.312) TCGA-CD-8536-01 17 78157906 78157906 C T CARD14 Missense_Mutation p.R182C 0.27 deleterious(0.02) benign(0.064) TCGA-CD-8536-01 17 78338261 78338261 G A RNF213 Missense_Mutation p.A3927T 0.24 benign(0.148) TCGA-CD-8536-01 17 7907409 7907409 G A GUCY2D Missense_Mutation p.V321M 0.22 deleterious(0.01) possibly_damaging(0.78) TCGA-CD-8536-01 17 79246344 79246344 G A SLC38A10 Silent p.T332T 0.26 TCGA-CD-8536-01 17 79495836 79495836 G A FSCN2 Silent p.L93L 0.27 TCGA-CD-8536-01 17 79953921 79953922 - G ASPSCR1 Frame_Shift_Ins p.S165Qfs*104 0.22 TCGA-CD-8536-01 17 79985932 79985932 C A LRRC45 Silent p.A319A 0.42 TCGA-CD-8536-01 17 80159422 80159422 G A CCDC57 Silent p.R133R 0.21 TCGA-CD-8536-01 17 80196837 80196837 G A SLC16A3 Silent p.P461P 0.27 TCGA-CD-8536-01 17 8445549 8445549 T A MYH10 Missense_Mutation p.Q494L 0.22 benign(0.009) TCGA-CD-8536-01 18 12370885 12370885 T - AFG3L2 Frame_Shift_Del p.A86Lfs*99 0.24 TCGA-CD-8536-01 18 21474921 21474921 G A LAMA3 Missense_Mutation p.E1838K 0.25 benign(0.11) TCGA-CD-8536-01 18 28659851 28659851 T - DSC2 Frame_Shift_Del p.N542Mfs*29 0.20 TCGA-CD-8536-01 18 32707161 32707161 C A MAPRE2 Intron 0.26 TCGA-CD-8536-01 18 33828912 33828912 A C MOCOS Missense_Mutation p.E663A 0.26 deleterious(0.04) probably_damaging(0.928) TCGA-CD-8536-01 18 34853000 34853000 C T CELF4 Missense_Mutation p.A310T 0.24 tolerated(0.93) possibly_damaging(0.747) TCGA-CD-8536-01 18 43311018 43311018 C T SLC14A1 Missense_Mutation p.R120W 0.23 deleterious(0) probably_damaging(1) TCGA-CD-8536-01 18 47802077 47802077 G A MBD1 Missense_Mutation p.R229W 0.22 deleterious(0.02) probably_damaging(0.994) TCGA-CD-8536-01 18 51053099 51053099 G T DCC Missense_Mutation p.E1408D 0.20 tolerated(0.12) benign(0.02) TCGA-CD-8536-01 18 5891602 5891602 C T TMEM200C Missense_Mutation p.R154H 0.26 tolerated(0.09) probably_damaging(0.991) TCGA-CD-8536-01 18 67795744 67795744 A G RTTN Missense_Mutation p.V998A 0.21 deleterious(0.01) benign(0.304) TCGA-CD-8536-01 18 72999592 72999592 A G TSHZ1 Missense_Mutation p.N699D 0.20 deleterious(0.02) benign(0.201) TCGA-CD-8536-01 18 77896426 77896426 A - ADNP2 Frame_Shift_Del p.K1045Nfs*29 0.16 TCGA-CD-8536-01 18 8380326 8380326 C T PTPRM Silent p.T1273T 0.28 TCGA-CD-8536-01 19 10203374 10203374 C T ANGPTL6 Missense_Mutation p.G435D 0.29 tolerated(0.06) probably_damaging(1) TCGA-CD-8536-01 19 10334939 10334939 C T S1PR2 Missense_Mutation p.V215M 0.23 tolerated(0.11) possibly_damaging(0.455) TCGA-CD-8536-01 19 10489041 10489041 G A TYK2 Silent p.P14P 0.19 TCGA-CD-8536-01 19 10602832 10602832 C T KEAP1 Missense_Mutation p.C249Y 0.31 deleterious(0) probably_damaging(0.924) TCGA-CD-8536-01 19 1074149 1074149 G - HMHA1 Frame_Shift_Del p.G297Afs*16 0.19 TCGA-CD-8536-01 19 10753675 10753675 G A SLC44A2 Intron 0.36 TCGA-CD-8536-01 19 11135028 11135028 G A SMARCA4 Missense_Mutation p.D999N 0.26 probably_damaging(0.954) TCGA-CD-8536-01 19 11233946 11233946 T - LDLR Frame_Shift_Del p.D748Tfs*17 0.18 TCGA-CD-8536-01 19 11472075 11472075 G A DKFZP761J1410 Missense_Mutation p.A167T 0.29 tolerated(1) benign(0.08) TCGA-CD-8536-01 19 11475043 11475043 C T DKFZP761J1410 Missense_Mutation p.R321C 0.23 tolerated(0.11) benign(0.002) TCGA-CD-8536-01 19 12692113 12692113 A G ZNF490 Missense_Mutation p.F259S 0.23 deleterious(0.03) probably_damaging(0.997) TCGA-CD-8536-01 19 13409876 13409876 G A CACNA1A Silent p.F857F 0.15 TCGA-CD-8536-01 19 13941470 13941470 G A ZSWIM4 Missense_Mutation p.R859Q 0.25 tolerated(0.09) unknown(0) TCGA-CD-8536-01 19 14020696 14020696 G A CC2D1A Missense_Mutation p.D41N 0.27 deleterious(0.03) benign(0.017) TCGA-CD-8536-01 19 15648459 15648459 G A CYP4F22 Missense_Mutation p.A179T 0.21 tolerated(1) benign(0.001) TCGA-CD-8536-01 19 16630060 16630060 G C CHERP Silent p.G887G 0.22 TCGA-CD-8536-01 19 16963880 16963880 A - SIN3B Frame_Shift_Del p.M286* 0.21 TCGA-CD-8536-01 19 17160887 17160887 G - HAUS8 Frame_Shift_Del p.S344Afs*86 0.24 TCGA-CD-8536-01 19 1791787 1791787 C A ATP8B3 Missense_Mutation p.S755I 0.21 deleterious(0) possibly_damaging(0.532) TCGA-CD-8536-01 19 1816782 1816782 G A REXO1 Missense_Mutation p.R1078C 0.24 deleterious(0.02) possibly_damaging(0.891) TCGA-CD-8536-01 19 1912907 1912907 C T ADAT3 Silent p.D287D 0.16 TCGA-CD-8536-01 19 19606915 19606916 - C GATAD2A Frame_Shift_Ins p.R273Pfs*58 0.15 TCGA-CD-8536-01 19 19672896 19672896 G - PBX4 Frame_Shift_Del p.Q355Nfs*25 0.10 TCGA-CD-8536-01 19 20959272 20959272 C T ZNF66 Intron 0.22 TCGA-CD-8536-01 19 22575731 22575731 A T ZNF98 Missense_Mutation p.N102K 0.18 deleterious(0.01) benign(0.109) TCGA-CD-8536-01 19 22846755 22846755 A G ZNF492 Missense_Mutation p.K95R 0.20 tolerated(0.06) benign(0.007) TCGA-CD-8536-01 19 2290756 2290756 C T LINGO3 Silent p.S340S 0.28 TCGA-CD-8536-01 19 23544353 23544353 G T ZNF91 Silent p.T476T 0.17 TCGA-CD-8536-01 19 23836066 23836066 T - ZNF675 Frame_Shift_Del p.I557Yfs*35 0.21 TCGA-CD-8536-01 19 2834223 2834223 G T ZNF554 Silent p.G330G 0.07 TCGA-CD-8536-01 19 2877513 2877513 G A ZNF556 Missense_Mutation p.R186H 0.21 tolerated(0.54) benign(0.028) TCGA-CD-8536-01 19 32845353 32845353 G A ZNF507 Silent p.A539A 0.20 TCGA-CD-8536-01 19 33119673 33119673 C T ANKRD27 Missense_Mutation p.C431Y 0.26 deleterious(0) possibly_damaging(0.712) TCGA-CD-8536-01 19 33464114 33464114 C - C19orf40 Frame_Shift_Del p.P6Lfs*41 0.20 TCGA-CD-8536-01 19 33703303 33703303 G A SLC7A10 Missense_Mutation p.T228M 0.16 deleterious(0.02) possibly_damaging(0.816) TCGA-CD-8536-01 19 3496869 3496869 G A DOHH 5'UTR 0.30 TCGA-CD-8536-01 19 35250403 35250403 T C ZNF599 Missense_Mutation p.S435G 0.16 tolerated(0.42) benign(0.001) TCGA-CD-8536-01 19 35842792 35842792 G A FFAR1 Missense_Mutation p.G113D 0.19 tolerated(0.55) benign(0.017) TCGA-CD-8536-01 19 3600327 3600327 G A TBXA2R Silent p.C102C 0.28 TCGA-CD-8536-01 19 36210764 36210764 C - KMT2B Frame_Shift_Del p.P174Qfs*20 0.23 TCGA-CD-8536-01 19 36214083 36214083 G A KMT2B Missense_Mutation p.R970Q 0.13 probably_damaging(0.968) TCGA-CD-8536-01 19 36430505 36430505 C T LRFN3 Missense_Mutation p.R60W 0.25 deleterious(0) probably_damaging(0.995) TCGA-CD-8536-01 19 36517912 36517912 G A CLIP3 Silent p.D114D 0.33 TCGA-CD-8536-01 19 37619816 37619816 A G ZNF420 Silent p.K641K 0.16 TCGA-CD-8536-01 19 3778397 3778397 G A MATK Silent p.A437A 0.23 TCGA-CD-8536-01 19 38103001 38103001 A G ZNF540 Missense_Mutation p.K274E 0.07 deleterious(0.04) probably_damaging(0.977) TCGA-CD-8536-01 19 38916740 38916740 C T RASGRP4 5'UTR 0.24 TCGA-CD-8536-01 19 38958451 38958451 G A RYR1 Missense_Mutation p.R1127H 0.27 probably_damaging(0.93) TCGA-CD-8536-01 19 38968433 38968433 C T RYR1 Silent p.H1459H 0.20 TCGA-CD-8536-01 19 39219950 39219950 C - ACTN4 Frame_Shift_Del p.D874Tfs*44 0.28 TCGA-CD-8536-01 19 39874169 39874169 G A SAMD4B 3'UTR 0.19 TCGA-CD-8536-01 19 40368363 40368363 C T FCGBP Missense_Mutation p.V4329M 0.06 benign(0.389) TCGA-CD-8536-01 19 40485724 40485724 C T PSMC4 Missense_Mutation p.A225V 0.17 deleterious(0.02) possibly_damaging(0.8) TCGA-CD-8536-01 19 40788492 40788492 G T AKT2 Intron 0.31 TCGA-CD-8536-01 19 40832311 40832311 G A C19orf47 Silent p.Y211Y 0.15 TCGA-CD-8536-01 19 4117625 4117626 - C MAP2K2 Frame_Shift_Ins p.A32Gfs*16 0.19 TCGA-CD-8536-01 19 41759537 41759537 G A AXL Missense_Mutation p.A654T 0.12 tolerated(0.6) benign(0.012) TCGA-CD-8536-01 19 41884362 41884362 C A TMEM91 Missense_Mutation p.L50M 0.18 tolerated_low_confidence(0.07) possibly_damaging(0.757) TCGA-CD-8536-01 19 4357372 4357372 G A MPND Silent p.L373L 0.25 TCGA-CD-8536-01 19 44636030 44636030 G A ZNF225 Silent p.A421A 0.23 TCGA-CD-8536-01 19 44661759 44661759 T C ZNF234 Silent p.H530H 0.28 TCGA-CD-8536-01 19 44947129 44947129 C T ZNF229 5'UTR 0.24 TCGA-CD-8536-01 19 4512043 4512043 G A PLIN4 Silent p.N629N 0.23 TCGA-CD-8536-01 19 45493705 45493705 C T CLPTM1 Silent p.S395S 0.24 TCGA-CD-8536-01 19 45864875 45864875 G T ERCC2 Missense_Mutation p.L382M 0.22 deleterious(0.04) possibly_damaging(0.777) TCGA-CD-8536-01 19 46280616 46280618 TCC - DMPK In_Frame_Del p.E381del 0.17 TCGA-CD-8536-01 19 463926 463926 C T ODF3L2 Missense_Mutation p.R263H 0.26 deleterious(0) probably_damaging(0.999) TCGA-CD-8536-01 19 46915950 46915950 G A CCDC8 Missense_Mutation p.R40W 0.07 probably_damaging(1) TCGA-CD-8536-01 19 46997443 46997443 G A PNMAL2 Missense_Mutation p.A427V 0.25 tolerated_low_confidence(0.12) benign(0.005) TCGA-CD-8536-01 19 48342617 48342617 G A CRX Missense_Mutation p.R98Q 0.21 tolerated(1) benign(0.003) TCGA-CD-8536-01 19 49414506 49414506 G A NUCB1 Silent p.Q159Q 0.28 TCGA-CD-8536-01 19 49514566 49514566 C T RUVBL2 Nonsense_Mutation p.R334* 0.23 TCGA-CD-8536-01 19 49703691 49703691 T C TRPM4 Splice_Site p.X926_splice 0.31 TCGA-CD-8536-01 19 49933839 49933839 G T SLC17A7 Silent p.S540S 0.29 TCGA-CD-8536-01 19 50165518 50165518 C T IRF3 Silent p.P223P 0.17 TCGA-CD-8536-01 19 50213644 50213644 T A CPT1C Missense_Mutation p.V545D 0.07 deleterious(0) possibly_damaging(0.863) TCGA-CD-8536-01 19 50311684 50311684 C T FUZ Silent p.T340T 0.25 TCGA-CD-8536-01 19 50548645 50548645 A G ZNF473 Silent p.T315T 0.23 TCGA-CD-8536-01 19 51022077 51022077 G A LRRC4B Missense_Mutation p.T298M 0.24 deleterious(0.01) possibly_damaging(0.601) TCGA-CD-8536-01 19 52091589 52091589 A G ZNF175 Missense_Mutation p.R669G 0.19 deleterious(0) benign(0.239) TCGA-CD-8536-01 19 53138340 53138340 C T ZNF83 5'UTR 0.29 TCGA-CD-8536-01 19 53572140 53572140 T - ZNF160 Frame_Shift_Del p.K549Nfs*60 0.24 TCGA-CD-8536-01 19 53958336 53958336 A G ZNF761 RNA 0.21 TCGA-CD-8536-01 19 5455890 5455890 C T ZNRF4 Missense_Mutation p.R130W 0.24 deleterious(0) probably_damaging(0.965) TCGA-CD-8536-01 19 54876447 54876447 G A LAIR1 5'UTR 0.23 TCGA-CD-8536-01 19 54973185 54973188 AGAA - LENG8 3'UTR 0.19 TCGA-CD-8536-01 19 55086421 55086421 G A LILRA2 Silent p.S192S 0.23 TCGA-CD-8536-01 19 55670421 55670421 G T DNAAF3 3'UTR 0.12 TCGA-CD-8536-01 19 56133442 56133442 C T ZNF784 Missense_Mutation p.R216H 0.38 deleterious(0.03) probably_damaging(0.998) TCGA-CD-8536-01 19 56133473 56133473 G A ZNF784 Missense_Mutation p.R206C 0.33 deleterious(0) probably_damaging(0.993) TCGA-CD-8536-01 19 5692122 5692122 T C LONP1 Missense_Mutation p.H934R 0.19 tolerated(0.14) possibly_damaging(0.703) TCGA-CD-8536-01 19 56935120 56935120 G A ZNF583 Missense_Mutation p.G365R 0.22 tolerated(0.26) probably_damaging(1) TCGA-CD-8536-01 19 58420289 58420289 C T ZNF417 Missense_Mutation p.V453I 0.19 tolerated(0.27) benign(0.008) TCGA-CD-8536-01 19 58596463 58596463 G A ZSCAN18 Silent p.P430P 0.28 TCGA-CD-8536-01 19 59010237 59010237 C T SLC27A5 Missense_Mutation p.G604D 0.15 tolerated(0.17) benign(0.172) TCGA-CD-8536-01 19 59027836 59027836 G A ZBTB45 Missense_Mutation p.T402M 0.25 deleterious(0.02) possibly_damaging(0.631) TCGA-CD-8536-01 19 5951588 5951588 T - RANBP3 Frame_Shift_Del p.N33Tfs*31 0.26 TCGA-CD-8536-01 19 620437 620437 G A POLRMT Silent p.C897C 0.26 TCGA-CD-8536-01 19 643536 643536 C G FGF22 Missense_Mutation p.P149A 0.41 deleterious(0) probably_damaging(0.941) TCGA-CD-8536-01 19 6454640 6454640 G A SLC25A23 Missense_Mutation p.A191V 0.39 deleterious(0.02) probably_damaging(0.911) TCGA-CD-8536-01 19 6495958 6495958 G A TUBB4A Silent p.N184N 0.26 TCGA-CD-8536-01 19 6760878 6760878 G A SH2D3A Missense_Mutation p.R64C 0.20 deleterious(0.03) benign(0.027) TCGA-CD-8536-01 19 7584517 7584517 C - ZNF358 Frame_Shift_Del p.Q132Rfs*35 0.24 TCGA-CD-8536-01 19 7690852 7690852 C T XAB2 Missense_Mutation p.G246R 0.25 deleterious(0) possibly_damaging(0.669) TCGA-CD-8536-01 19 7810926 7810926 C T CD209 Missense_Mutation p.A76T 0.23 tolerated(0.44) benign(0.002) TCGA-CD-8536-01 19 8555241 8555241 G A PRAM1 Silent p.Y652Y 0.30 TCGA-CD-8536-01 19 855757 855757 G A ELANE Missense_Mutation p.C187Y 0.22 deleterious(0) probably_damaging(1) TCGA-CD-8536-01 19 9060440 9060440 G T MUC16 Silent p.P9002P 0.24 TCGA-CD-8536-01 19 9062779 9062779 G A MUC16 Missense_Mutation p.P8223S 0.23 unknown(0) TCGA-CD-8536-01 19 9064310 9064310 G - MUC16 Frame_Shift_Del p.S7713Lfs*5 0.23 TCGA-CD-8536-01 19 9965340 9965340 C T OLFM2 Missense_Mutation p.R296H 0.21 tolerated(0.08) probably_damaging(0.973) TCGA-CD-8536-01 1 100207793 100207793 T - FRRS1 Frame_Shift_Del p.T124Qfs*20 0.23 TCGA-CD-8536-01 1 10197220 10197220 C T UBE4B Missense_Mutation p.R774C 0.23 deleterious(0) probably_damaging(0.978) TCGA-CD-8536-01 1 104116341 104116341 T G AMY2B Missense_Mutation p.C175W 0.17 deleterious(0) probably_damaging(0.999) TCGA-CD-8536-01 1 10477528 10477528 C G PGD Silent p.G357G 0.20 TCGA-CD-8536-01 1 109807188 109807188 C T CELSR2 Missense_Mutation p.P1801L 0.19 deleterious(0.02) benign(0.035) TCGA-CD-8536-01 1 112524339 112524339 G A KCND3 Missense_Mutation p.T337I 0.24 deleterious(0.03) possibly_damaging(0.803) TCGA-CD-8536-01 1 112525143 112525143 G A KCND3 Missense_Mutation p.T69M 0.24 deleterious(0.04) benign(0.009) TCGA-CD-8536-01 1 115272943 115272943 G A CSDE1 Missense_Mutation p.T477M 0.23 tolerated(0.19) possibly_damaging(0.496) TCGA-CD-8536-01 1 115399254 115399254 A - SYCP1 Frame_Shift_Del p.N58Mfs*34 0.14 TCGA-CD-8536-01 1 117078717 117078717 A G CD58 Silent p.C166C 0.17 TCGA-CD-8536-01 1 120480612 120480612 G A NOTCH2 Missense_Mutation p.R1069W 0.20 deleterious(0) possibly_damaging(0.713) TCGA-CD-8536-01 1 12251939 12251939 C T TNFRSF1B Missense_Mutation p.P139L 0.25 tolerated(0.27) benign(0.02) TCGA-CD-8536-01 1 1229851 1229851 G A ACAP3 Silent p.H690H 0.31 TCGA-CD-8536-01 1 1273940 1273940 C T DVL1 Missense_Mutation p.R409H 0.26 deleterious(0) probably_damaging(0.984) TCGA-CD-8536-01 1 144859827 144859827 C G PDE4DIP Missense_Mutation p.S2086T 0.09 tolerated(0.49) benign(0.209) TCGA-CD-8536-01 1 145209341 145209341 C A RP11-458D21.5 5'UTR 0.32 TCGA-CD-8536-01 1 145326097 145326097 C T NBPF10 Missense_Mutation p.R1324C 0.16 benign(0.001) TCGA-CD-8536-01 1 145608422 145608422 G A POLR3C Missense_Mutation p.L129F 0.30 deleterious(0.05) possibly_damaging(0.589) TCGA-CD-8536-01 1 145608660 145608660 C G POLR3C Splice_Site p.X50_splice 0.30 TCGA-CD-8536-01 1 150526544 150526544 C T ADAMTSL4 Silent p.S359S 0.15 TCGA-CD-8536-01 1 151397496 151397496 G A POGZ Missense_Mutation p.R374W 0.29 deleterious(0) probably_damaging(0.995) TCGA-CD-8536-01 1 151681720 151681720 G A CELF3 Missense_Mutation p.R128W 0.20 deleterious(0) probably_damaging(0.992) TCGA-CD-8536-01 1 152185591 152185591 A G HRNR Silent p.Y2838Y 0.22 TCGA-CD-8536-01 1 152277362 152277362 C A FLG Missense_Mutation p.G3334W 0.22 unknown(0) TCGA-CD-8536-01 1 153005023 153005023 A G SPRR1B Missense_Mutation p.K68E 0.19 deleterious(0.03) probably_damaging(0.989) TCGA-CD-8536-01 1 153513914 153513914 C T S100A5 5'UTR 0.29 TCGA-CD-8536-01 1 154919254 154919254 A G PBXIP1 Missense_Mutation p.L299P 0.13 deleterious(0) probably_damaging(0.999) TCGA-CD-8536-01 1 155006497 155006498 - C DCST1 5'UTR 0.19 TCGA-CD-8536-01 1 155035033 155035033 C T ADAM15 3'UTR 0.26 TCGA-CD-8536-01 1 155264041 155264041 A G PKLR Silent p.V367V 0.25 TCGA-CD-8536-01 1 155296779 155296779 G A RUSC1 Missense_Mutation p.R757H 0.24 tolerated(0.21) benign(0.002) TCGA-CD-8536-01 1 156565595 156565595 C G GPATCH4 Missense_Mutation p.E180Q 0.27 deleterious(0.01) probably_damaging(0.994) TCGA-CD-8536-01 1 157773681 157773681 C A FCRL1 Missense_Mutation p.M91I 0.25 deleterious(0.02) benign(0.026) TCGA-CD-8536-01 1 158651408 158651408 G A SPTA1 Missense_Mutation p.T147I 0.27 tolerated(0.42) possibly_damaging(0.698) TCGA-CD-8536-01 1 158651423 158651423 A G SPTA1 Missense_Mutation p.L142P 0.27 tolerated(0.07) probably_damaging(0.941) TCGA-CD-8536-01 1 15900200 15900200 C T AGMAT Silent p.A335A 0.17 TCGA-CD-8536-01 1 160063505 160063505 G A IGSF8 Missense_Mutation p.T300M 0.07 tolerated(0.06) benign(0.041) TCGA-CD-8536-01 1 160318843 160318843 T C NCSTN Missense_Mutation p.L82P 0.24 deleterious(0) probably_damaging(0.993) TCGA-CD-8536-01 1 160395046 160395046 C T VANGL2 Missense_Mutation p.R482C 0.23 tolerated(0.19) probably_damaging(0.966) TCGA-CD-8536-01 1 161026254 161026254 A G ARHGAP30 Missense_Mutation p.V90A 0.09 deleterious(0) probably_damaging(1) TCGA-CD-8536-01 1 16375710 16375710 C T CLCNKB Missense_Mutation p.R251W 0.23 deleterious(0) probably_damaging(0.997) TCGA-CD-8536-01 1 167023646 167023647 - CT GPA33 Frame_Shift_Ins p.E296Gfs*81 0.15 TCGA-CD-8536-01 1 167097566 167097566 G A DUSP27 Silent p.R1066R 0.19 TCGA-CD-8536-01 1 167847701 167847701 C A ADCY10 Missense_Mutation p.W463C 0.14 deleterious(0) benign(0.001) TCGA-CD-8536-01 1 168065809 168065809 G A GPR161 Missense_Mutation p.R366W 0.26 deleterious(0) probably_damaging(0.992) TCGA-CD-8536-01 1 169821919 169821919 T - SCYL3 3'UTR 0.30 TCGA-CD-8536-01 1 171509660 171509660 A - PRRC2C Frame_Shift_Del p.K1018Nfs*7 0.17 TCGA-CD-8536-01 1 171621418 171621418 C T MYOC Missense_Mutation p.E112K 0.21 tolerated(0.62) benign(0.035) TCGA-CD-8536-01 1 1735886 1735886 G A GNB1 Silent p.R134R 0.16 TCGA-CD-8536-01 1 179086567 179086567 T C ABL2 Silent p.G436G 0.11 TCGA-CD-8536-01 1 18023430 18023430 G A ARHGEF10L Missense_Mutation p.R1132Q 0.24 deleterious(0.01) benign(0.071) TCGA-CD-8536-01 1 18023576 18023576 G A ARHGEF10L Missense_Mutation p.A1181T 0.26 tolerated(0.2) benign(0.31) TCGA-CD-8536-01 1 18149783 18149783 G T ACTL8 Nonsense_Mutation p.E94* 0.10 TCGA-CD-8536-01 1 183909738 183909738 T C COLGALT2 Silent p.P527P 0.07 TCGA-CD-8536-01 1 19992244 19992244 C A HTR6 5'UTR 0.31 TCGA-CD-8536-01 1 201837923 201837923 C T IPO9 Missense_Mutation p.A668V 0.26 tolerated(0.06) benign(0.421) TCGA-CD-8536-01 1 202092196 202092196 C T GPR37L1 Silent p.A35A 0.22 TCGA-CD-8536-01 1 202128486 202128486 G A PTPN7 Silent p.T120T 0.23 TCGA-CD-8536-01 1 203690405 203690406 - C ATP2B4 Frame_Shift_Ins p.T896Yfs*14 0.27 TCGA-CD-8536-01 1 203696634 203696634 G A ATP2B4 Missense_Mutation p.A1082T 0.21 tolerated(0.11) benign(0.043) TCGA-CD-8536-01 1 204587901 204587901 G A LRRN2 Missense_Mutation p.P407L 0.20 tolerated(0.35) benign(0.003) TCGA-CD-8536-01 1 205312477 205312477 C A KLHDC8A Missense_Mutation p.G86C 0.17 deleterious(0) probably_damaging(1) TCGA-CD-8536-01 1 206327498 206327498 C T CTSE Silent p.S229S 0.19 TCGA-CD-8536-01 1 206328844 206328844 C - CTSE Frame_Shift_Del p.V306Wfs*106 0.22 TCGA-CD-8536-01 1 209811956 209811956 G T LAMB3 Missense_Mutation p.P74H 0.25 deleterious(0) possibly_damaging(0.547) TCGA-CD-8536-01 1 210857408 210857408 G - KCNH1 Frame_Shift_Del p.L729* 0.22 TCGA-CD-8536-01 1 214813840 214813840 A T CENPF Missense_Mutation p.N720I 0.16 probably_damaging(0.999) TCGA-CD-8536-01 1 217804742 217804742 C A SPATA17 Missense_Mutation p.Q8K 0.21 tolerated(0.15) benign(0.03) TCGA-CD-8536-01 1 220344405 220344405 G A RAB3GAP2 Missense_Mutation p.L879F 0.12 deleterious(0.01) probably_damaging(0.962) TCGA-CD-8536-01 1 22160048 22160048 T C HSPG2 Silent p.S3630S 0.26 TCGA-CD-8536-01 1 22217179 22217179 G A HSPG2 Nonsense_Mutation p.R85* 0.09 TCGA-CD-8536-01 1 22313154 22313154 C T CELA3B Missense_Mutation p.A258V 0.30 deleterious(0) probably_damaging(0.928) TCGA-CD-8536-01 1 226037666 226037666 G A TMEM63A Missense_Mutation p.A673V 0.21 tolerated(0.3) possibly_damaging(0.811) TCGA-CD-8536-01 1 226570803 226570803 C T PARP1 Missense_Mutation p.V365M 0.20 tolerated(0.12) benign(0.06) TCGA-CD-8536-01 1 227182673 227182673 C T CDC42BPA Missense_Mutation p.A1627T 0.17 tolerated(0.56) benign(0.002) TCGA-CD-8536-01 1 228596210 228596210 G A TRIM17 Missense_Mutation p.R376W 0.18 deleterious(0) probably_damaging(0.994) TCGA-CD-8536-01 1 230979165 230979165 G A C1orf198 Missense_Mutation p.P288S 0.33 tolerated(0.77) benign(0.015) TCGA-CD-8536-01 1 231473363 231473363 C A EXOC8 Missense_Mutation p.E43D 0.23 tolerated(0.21) benign(0.166) TCGA-CD-8536-01 1 236719131 236719131 G A HEATR1 Silent p.L1875L 0.23 TCGA-CD-8536-01 1 237765356 237765356 T - RYR2 Frame_Shift_Del p.F1544Lfs*17 0.18 TCGA-CD-8536-01 1 237881792 237881792 A G RYR2 Missense_Mutation p.I3509V 0.11 benign(0.016) TCGA-CD-8536-01 1 24392467 24392467 G A MYOM3 Missense_Mutation p.R1150C 0.26 tolerated(0.12) benign(0.015) TCGA-CD-8536-01 1 24400702 24400702 T C MYOM3 Missense_Mutation p.I972M 0.20 tolerated(0.1) benign(0.004) TCGA-CD-8536-01 1 24401807 24401807 A G MYOM3 Splice_Site p.X953_splice 0.22 TCGA-CD-8536-01 1 245848881 245848881 A G KIF26B Missense_Mutation p.I866V 0.13 deleterious(0) unknown(0) TCGA-CD-8536-01 1 245849721 245849721 G T KIF26B Missense_Mutation p.G1146W 0.17 deleterious(0) unknown(0) TCGA-CD-8536-01 1 248343552 248343552 A G OR2M2 Missense_Mutation p.S89G 0.22 tolerated(0.1) benign(0.101) TCGA-CD-8536-01 1 249210872 249210872 T C PGBD2 Missense_Mutation p.M30T 0.23 deleterious(0.01) benign(0) TCGA-CD-8536-01 1 25747161 25747161 C A RHCE Missense_Mutation p.E39D 0.15 tolerated(0.42) benign(0.019) TCGA-CD-8536-01 1 26310481 26310481 G A PAFAH2 Nonsense_Mutation p.R170* 0.22 TCGA-CD-8536-01 1 27087443 27087443 C T ARID1A Nonsense_Mutation p.Q673* 0.20 TCGA-CD-8536-01 1 27097622 27097622 A - ARID1A Frame_Shift_Del p.K1072Nfs*21 0.27 TCGA-CD-8536-01 1 28534906 28534907 - T DNAJC8 Frame_Shift_Ins p.Q140Tfs*15 0.35 TCGA-CD-8536-01 1 29064825 29064828 CTTA - YTHDF2 Frame_Shift_Del p.Y37* 0.18 TCGA-CD-8536-01 1 29069769 29069769 G A YTHDF2 Silent p.L329L 0.20 TCGA-CD-8536-01 1 31532098 31532100 TAT - PUM1 In_Frame_Del p.N105del 0.20 TCGA-CD-8536-01 1 32086580 32086580 C T HCRTR1 Missense_Mutation p.S172L 0.25 deleterious(0) probably_damaging(0.979) TCGA-CD-8536-01 1 32653571 32653571 A C TXLNA Missense_Mutation p.N205T 0.24 tolerated(0.66) benign(0.005) TCGA-CD-8536-01 1 32694368 32694368 G A EIF3I Missense_Mutation p.R227Q 0.20 tolerated(0.36) benign(0.009) TCGA-CD-8536-01 1 33059154 33059154 A - ZBTB8A Frame_Shift_Del p.K209Rfs*5 0.16 TCGA-CD-8536-01 1 33292201 33292201 G A S100PBP Silent p.S167S 0.19 TCGA-CD-8536-01 1 33292405 33292405 G A S100PBP Silent p.T235T 0.29 TCGA-CD-8536-01 1 33625499 33625499 C T TRIM62 Missense_Mutation p.R184Q 0.24 deleterious(0.02) benign(0.316) TCGA-CD-8536-01 1 34554581 34554581 G A CSMD2 Missense_Mutation p.T94M 0.21 tolerated(0.08) benign(0.041) TCGA-CD-8536-01 1 35652837 35652837 G A SFPQ Nonsense_Mutation p.R611* 0.07 TCGA-CD-8536-01 1 36359342 36359342 C T AGO1 Missense_Mutation p.R194C 0.27 deleterious(0.03) probably_damaging(0.967) TCGA-CD-8536-01 1 36367669 36367669 C T AGO1 Missense_Mutation p.R421W 0.18 deleterious(0) probably_damaging(0.941) TCGA-CD-8536-01 1 36644173 36644173 G A MAP7D1 Missense_Mutation p.R621Q 0.29 possibly_damaging(0.553) TCGA-CD-8536-01 1 36755130 36755130 C T THRAP3 Missense_Mutation p.R504W 0.21 deleterious(0) probably_damaging(0.978) TCGA-CD-8536-01 1 40030821 40030821 A G PABPC4 Missense_Mutation p.F401S 0.18 tolerated(0.1) benign(0.082) TCGA-CD-8536-01 1 41107430 41107430 G A RIMS3 Silent p.I56I 0.24 TCGA-CD-8536-01 1 41483426 41483426 G A SLFNL1 Missense_Mutation p.R280C 0.09 deleterious(0) probably_damaging(0.998) TCGA-CD-8536-01 1 41540888 41540888 T C SCMH1 Intron 0.20 TCGA-CD-8536-01 1 43220639 43220639 G A LEPRE1 Missense_Mutation p.R416C 0.24 deleterious(0) probably_damaging(0.988) TCGA-CD-8536-01 1 45805807 45805807 C T MUTYH Intron 0.31 TCGA-CD-8536-01 1 46499806 46499806 C T MAST2 Missense_Mutation p.R1246C 0.22 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CD-8536-01 1 46654925 46654925 G T POMGNT1 Silent p.P658P 0.09 TCGA-CD-8536-01 1 48917264 48917264 C T SPATA6 Silent p.P66P 0.23 TCGA-CD-8536-01 1 53704128 53704128 A - MAGOH 5'UTR 0.17 TCGA-CD-8536-01 1 55266656 55266656 C T TTC22 Missense_Mutation p.A61T 0.23 tolerated(1) benign(0.001) TCGA-CD-8536-01 1 59787288 59787288 C T FGGY Missense_Mutation p.R23C 0.26 deleterious(0) probably_damaging(1) TCGA-CD-8536-01 1 6189026 6189026 C T CHD5 Missense_Mutation p.R1164H 0.30 deleterious(0.02) probably_damaging(0.962) TCGA-CD-8536-01 1 6341341 6341341 C T ACOT7 Missense_Mutation p.V289I 0.24 tolerated(0.23) benign(0.044) TCGA-CD-8536-01 1 64120083 64120083 G A PGM1 Silent p.R533R 0.19 TCGA-CD-8536-01 1 65325833 65325833 G - JAK1 Frame_Shift_Del p.P430Rfs*2 0.34 TCGA-CD-8536-01 1 75171941 75171941 A G CRYZ 3'UTR 0.28 TCGA-CD-8536-01 1 79129487 79129487 A - IFI44 Frame_Shift_Del p.K444Nfs*17 0.13 TCGA-CD-8536-01 1 86824479 86824480 - T ODF2L Frame_Shift_Ins p.N450Kfs*52 0.34 TCGA-CD-8536-01 1 9804004 9804004 G A CLSTN1 Missense_Mutation p.R432C 0.20 deleterious(0) probably_damaging(0.993) TCGA-CD-8536-01 20 13260512 13260512 C T ISM1 Missense_Mutation p.R204W 0.22 tolerated(0.3) possibly_damaging(0.507) TCGA-CD-8536-01 20 13866948 13866950 CTC - SEL1L2 In_Frame_Del p.G295del 0.11 TCGA-CD-8536-01 20 13976362 13976362 G A MACROD2 5'UTR 0.30 TCGA-CD-8536-01 20 30156006 30156006 G A HM13 Missense_Mutation p.R387H 0.19 deleterious_low_confidence(0.04) possibly_damaging(0.736) TCGA-CD-8536-01 20 31600712 31600712 C T BPIFB2 Missense_Mutation p.R103C 0.22 tolerated(0.1) benign(0.027) TCGA-CD-8536-01 20 32210942 32210942 C T CBFA2T2 Missense_Mutation p.R187W 0.25 deleterious(0.01) probably_damaging(0.962) TCGA-CD-8536-01 20 33501949 33501949 G A ACSS2 Missense_Mutation p.E232K 0.18 tolerated(0.57) benign(0.274) TCGA-CD-8536-01 20 33583304 33583304 G A MYH7B Missense_Mutation p.E998K 0.35 benign(0.39) TCGA-CD-8536-01 20 35856962 35856962 C T RPN2 Nonsense_Mutation p.R437* 0.16 TCGA-CD-8536-01 20 36640671 36640672 CA - TTI1 Frame_Shift_Del p.V516Gfs*11 0.20 TCGA-CD-8536-01 20 3674201 3674201 A G SIGLEC1 Missense_Mutation p.I1134T 0.15 deleterious(0.01) possibly_damaging(0.474) TCGA-CD-8536-01 20 39831063 39831063 G A ZHX3 Nonsense_Mutation p.R832* 0.24 TCGA-CD-8536-01 20 40081526 40081526 C T CHD6 Silent p.S1059S 0.21 TCGA-CD-8536-01 20 42161519 42161519 G A L3MBTL1 Missense_Mutation p.R442H 0.31 deleterious(0) possibly_damaging(0.669) TCGA-CD-8536-01 20 43942683 43942683 C T RBPJL Missense_Mutation p.H256Y 0.10 deleterious(0.04) benign(0.148) TCGA-CD-8536-01 20 44439551 44439551 C T DNTTIP1 Missense_Mutation p.R275W 0.21 deleterious(0.03) possibly_damaging(0.827) TCGA-CD-8536-01 20 44839124 44839124 C T CDH22 Missense_Mutation p.A370T 0.29 tolerated(0.18) benign(0.18) TCGA-CD-8536-01 20 46264985 46264985 A - NCOA3 Frame_Shift_Del p.K620Nfs*18 0.25 TCGA-CD-8536-01 20 46268544 46268544 G A NCOA3 Silent p.Q977Q 0.17 TCGA-CD-8536-01 20 47262418 47262418 G A PREX1 Silent p.H1161H 0.16 TCGA-CD-8536-01 20 47871122 47871122 G A ZNFX1 Missense_Mutation p.R957C 0.24 deleterious(0) possibly_damaging(0.863) TCGA-CD-8536-01 20 47886802 47886802 C A ZNFX1 Missense_Mutation p.R516M 0.24 deleterious(0) probably_damaging(0.998) TCGA-CD-8536-01 20 49508204 49508204 T - ADNP Frame_Shift_Del p.K1016Rfs*11 0.26 TCGA-CD-8536-01 20 49509773 49509773 T C ADNP Missense_Mutation p.Y493C 0.08 deleterious(0.02) probably_damaging(0.999) TCGA-CD-8536-01 20 50408612 50408612 C T SALL4 Missense_Mutation p.G137D 0.21 tolerated(0.07) benign(0.008) TCGA-CD-8536-01 20 51871900 51871900 C T TSHZ2 Missense_Mutation p.R635C 0.20 deleterious(0.04) benign(0) TCGA-CD-8536-01 20 55108495 55108496 - G FAM209B Frame_Shift_Ins p.K35Efs*46 0.16 TCGA-CD-8536-01 20 56140815 56140816 - GA PCK1 Frame_Shift_Ins p.I612Rfs*5 0.21 TCGA-CD-8536-01 20 56189988 56189989 - A ZBP1 Frame_Shift_Ins p.L153Sfs*5 0.16 TCGA-CD-8536-01 20 61340974 61340974 G A NTSR1 Missense_Mutation p.A139T 0.27 tolerated(0.38) benign(0.161) TCGA-CD-8536-01 20 61460839 61460839 G T COL9A3 Missense_Mutation p.E347D 0.06 tolerated(0.58) benign(0.038) TCGA-CD-8536-01 20 61937277 61937277 C A COL20A1 Missense_Mutation p.P128T 0.21 deleterious(0.04) benign(0.002) TCGA-CD-8536-01 20 62126331 62126331 C T EEF1A2 Missense_Mutation p.V150M 0.23 deleterious_low_confidence(0) possibly_damaging(0.867) TCGA-CD-8536-01 20 8782758 8782758 C T PLCB1 Intron 0.14 TCGA-CD-8536-01 21 28338436 28338436 T C ADAMTS5 Missense_Mutation p.Y92C 0.19 tolerated(0.1) probably_damaging(1) TCGA-CD-8536-01 21 34109677 34109677 C T PAXBP1 Missense_Mutation p.G842R 0.22 deleterious(0) possibly_damaging(0.901) TCGA-CD-8536-01 21 43413028 43413028 T - ZBTB21 Frame_Shift_Del p.T393Qfs*3 0.28 TCGA-CD-8536-01 21 43543205 43543205 G A UMODL1 Missense_Mutation p.G1159D 0.28 tolerated(0.5) benign(0.087) TCGA-CD-8536-01 21 45953725 45953725 G A TSPEAR Missense_Mutation p.H129Y 0.25 tolerated(0.11) benign(0.018) TCGA-CD-8536-01 21 46687433 46687433 G A POFUT2 Intron 0.22 TCGA-CD-8536-01 21 47531966 47531966 G A COL6A2 Silent p.T63T 0.26 TCGA-CD-8536-01 22 17073169 17073169 C T CCT8L2 Missense_Mutation p.R91Q 0.20 tolerated(0.22) possibly_damaging(0.509) TCGA-CD-8536-01 22 20100513 20100513 C A TRMT2A Missense_Mutation p.A523S 0.05 tolerated(0.05) possibly_damaging(0.854) TCGA-CD-8536-01 22 21801009 21801009 C T HIC2 Missense_Mutation p.R609C 0.20 deleterious(0) possibly_damaging(0.876) TCGA-CD-8536-01 22 24110067 24110067 C T CHCHD10 5'UTR 0.28 TCGA-CD-8536-01 22 26118486 26118486 T C ADRBK2 3'UTR 0.43 TCGA-CD-8536-01 22 30659979 30659979 G A OSM Missense_Mutation p.R218W 0.20 deleterious(0) probably_damaging(0.995) TCGA-CD-8536-01 22 30951338 30951338 C - GAL3ST1 Frame_Shift_Del p.E292Sfs*110 0.25 TCGA-CD-8536-01 22 32879930 32879930 C T FBXO7 Missense_Mutation p.A155V 0.28 tolerated(1) benign(0) TCGA-CD-8536-01 22 36055096 36055096 A G APOL6 Missense_Mutation p.D162G 0.19 tolerated(0.33) benign(0.158) TCGA-CD-8536-01 22 36702008 36702008 G - MYH9 Frame_Shift_Del p.N710Tfs*15 0.23 TCGA-CD-8536-01 22 37603678 37603678 G A SSTR3 Silent p.C55C 0.06 TCGA-CD-8536-01 22 37770721 37770721 G A ELFN2 Missense_Mutation p.P285L 0.22 deleterious(0) benign(0.107) TCGA-CD-8536-01 22 38895435 38895435 C T DDX17 Missense_Mutation p.V170M 0.05 deleterious(0.04) possibly_damaging(0.597) TCGA-CD-8536-01 22 39388538 39388538 T C APOBEC3B 3'UTR 0.24 TCGA-CD-8536-01 22 39710798 39710798 G T RPL3 Missense_Mutation p.L248M 0.16 deleterious(0) possibly_damaging(0.737) TCGA-CD-8536-01 22 40042748 40042748 G A CACNA1I Missense_Mutation p.V442I 0.22 tolerated(0.3) benign(0.157) TCGA-CD-8536-01 22 40364053 40364053 G A GRAP2 Missense_Mutation p.R156Q 0.17 tolerated(0.12) benign(0.382) TCGA-CD-8536-01 22 42099452 42099453 - T MEI1 Frame_Shift_Ins p.G100Wfs*17 0.34 TCGA-CD-8536-01 22 42524821 42524821 C A CYP2D6 Nonsense_Mutation p.E211* 0.08 TCGA-CD-8536-01 22 42911183 42911184 CT - RRP7A Frame_Shift_Del p.S145Pfs*13 0.26 TCGA-CD-8536-01 22 50655637 50655637 C T SELO Missense_Mutation p.R617W 0.24 deleterious(0) possibly_damaging(0.901) TCGA-CD-8536-01 22 50660487 50660487 C T TUBGCP6 Silent p.P818P 0.22 TCGA-CD-8536-01 22 50885799 50885799 C T SBF1 Silent p.T1845T 0.24 TCGA-CD-8536-01 2 101192867 101192867 A G PDCL3 Missense_Mutation p.E210G 0.22 deleterious(0.01) probably_damaging(0.988) TCGA-CD-8536-01 2 105924404 105924404 C - TGFBRAP1 Frame_Shift_Del p.A119Qfs*6 0.20 TCGA-CD-8536-01 2 107002773 107002773 G T PLGLA RNA 0.22 TCGA-CD-8536-01 2 113067707 113067707 A - ZC3H6 Frame_Shift_Del p.K196Nfs*4 0.19 TCGA-CD-8536-01 2 113587977 113587977 C A IL1B Missense_Mutation p.Q257H 0.19 tolerated(0.09) benign(0.025) TCGA-CD-8536-01 2 121050891 121050891 T C RALB 3'UTR 0.12 TCGA-CD-8536-01 2 128409295 128409295 A G GPR17 Missense_Mutation p.N357S 0.13 tolerated_low_confidence(0.06) benign(0.351) TCGA-CD-8536-01 2 128774050 128774050 G - SAP130 Frame_Shift_Del p.K167Rfs*39 0.16 TCGA-CD-8536-01 2 128774078 128774078 G A SAP130 Missense_Mutation p.A157V 0.13 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-CD-8536-01 2 145157561 145157561 T C ZEB2 Missense_Mutation p.N398S 0.20 tolerated(0.17) probably_damaging(0.995) TCGA-CD-8536-01 2 152317719 152317719 A G RIF1 Missense_Mutation p.D1048G 0.17 deleterious(0) possibly_damaging(0.821) TCGA-CD-8536-01 2 152539239 152539239 G A NEB Silent p.G960G 0.31 TCGA-CD-8536-01 2 155555858 155555858 G A KCNJ3 Missense_Mutation p.A191T 0.25 tolerated(0.1) probably_damaging(1) TCGA-CD-8536-01 2 158971750 158971750 C T UPP2 Silent p.T163T 0.08 TCGA-CD-8536-01 2 166894567 166894567 C - SCN1A Frame_Shift_Del p.A889Lfs*5 0.23 TCGA-CD-8536-01 2 170558162 170558162 A G PHOSPHO2 Silent p.S227S 0.15 TCGA-CD-8536-01 2 176983772 176983772 T C HOXD10 Missense_Mutation p.L279P 0.22 deleterious(0) probably_damaging(0.999) TCGA-CD-8536-01 2 179395875 179395875 G A TTN Missense_Mutation p.P35156L 0.26 TCGA-CD-8536-01 2 179635029 179635029 T - TTN Frame_Shift_Del p.K2800Sfs*5 0.15 TCGA-CD-8536-01 2 179736173 179736173 T A CCDC141 Missense_Mutation p.D729V 0.06 deleterious(0.04) benign(0.062) TCGA-CD-8536-01 2 1893171 1893171 G A MYT1L Missense_Mutation p.P786S 0.25 tolerated(0.35) benign(0.011) TCGA-CD-8536-01 2 189904254 189904254 C T COL5A2 Silent p.P1223P 0.28 TCGA-CD-8536-01 2 1914026 1914026 C T MYT1L Silent p.S599S 0.15 TCGA-CD-8536-01 2 192922438 192922438 C T TMEFF2 Missense_Mutation p.G168D 0.19 tolerated(0.09) possibly_damaging(0.87) TCGA-CD-8536-01 2 193059203 193059203 G A TMEFF2 Silent p.C16C 0.22 TCGA-CD-8536-01 2 203817394 203817394 G A CARF Missense_Mutation p.S140N 0.23 deleterious_low_confidence(0.04) benign(0.028) TCGA-CD-8536-01 2 20451242 20451242 A - PUM2 3'UTR 0.23 TCGA-CD-8536-01 2 206166298 206166298 A - PARD3B Frame_Shift_Del p.T775Rfs*13 0.21 TCGA-CD-8536-01 2 206882406 206882406 T - INO80D Frame_Shift_Del p.M514Wfs*5 0.33 TCGA-CD-8536-01 2 20870311 20870311 G A GDF7 Missense_Mutation p.R160H 0.21 deleterious(0) probably_damaging(0.991) TCGA-CD-8536-01 2 212483973 212483973 C A ERBB4 Missense_Mutation p.V744L 0.29 tolerated(0.06) possibly_damaging(0.51) TCGA-CD-8536-01 2 212570111 212570111 G - ERBB4 Frame_Shift_Del p.P377Lfs*8 0.15 TCGA-CD-8536-01 2 215914501 215914501 C T ABCA12 Missense_Mutation p.R181Q 0.26 deleterious(0.03) possibly_damaging(0.812) TCGA-CD-8536-01 2 219511046 219511046 C T ZNF142 Silent p.L433L 0.26 TCGA-CD-8536-01 2 219513732 219513732 C T ZNF142 Missense_Mutation p.R300H 0.21 deleterious(0) possibly_damaging(0.522) TCGA-CD-8536-01 2 219892687 219892687 G - CCDC108 Frame_Shift_Del p.M633* 0.25 TCGA-CD-8536-01 2 220028197 220028197 G A SLC23A3 Nonsense_Mutation p.R460* 0.23 TCGA-CD-8536-01 2 220308780 220308780 C T SPEG Intron 0.14 TCGA-CD-8536-01 2 220412244 220412244 G A TMEM198 Silent p.K61K 0.22 TCGA-CD-8536-01 2 220439496 220439496 C T INHA Missense_Mutation p.P117S 0.33 tolerated(0.05) possibly_damaging(0.893) TCGA-CD-8536-01 2 233421204 233421204 G A EIF4E2 Silent p.T33T 0.15 TCGA-CD-8536-01 2 233986852 233986852 G T INPP5D Missense_Mutation p.K78N 0.13 tolerated(0.32) benign(0.013) TCGA-CD-8536-01 2 234627977 234627977 T - UGT1A4 Frame_Shift_Del p.W173Gfs*8 0.27 TCGA-CD-8536-01 2 236706464 236706464 G A AGAP1 Silent p.S245S 0.17 TCGA-CD-8536-01 2 238725989 238725990 - T RBM44 Frame_Shift_Ins p.N147* 0.27 TCGA-CD-8536-01 2 242438129 242438129 G A STK25 Missense_Mutation p.T281M 0.18 deleterious(0.05) benign(0.025) TCGA-CD-8536-01 2 25754444 25754444 C T DTNB Missense_Mutation p.S300N 0.20 deleterious(0.01) possibly_damaging(0.87) TCGA-CD-8536-01 2 27424577 27424577 C T SLC5A6 Missense_Mutation p.V501I 0.15 tolerated(0.39) benign(0.001) TCGA-CD-8536-01 2 27601661 27601661 C T ZNF513 Missense_Mutation p.V158M 0.23 deleterious(0.02) possibly_damaging(0.623) TCGA-CD-8536-01 2 27664199 27664199 T C NRBP1 Splice_Site p.X483_splice 0.22 TCGA-CD-8536-01 2 277054 277054 A - ACP1 Frame_Shift_Del p.K124Nfs*61 0.18 TCGA-CD-8536-01 2 27804427 27804427 G A C2orf16 Missense_Mutation p.R1663H 0.24 tolerated(0.3) possibly_damaging(0.791) TCGA-CD-8536-01 2 30966439 30966439 G A CAPN13 Missense_Mutation p.R419W 0.26 tolerated(0.2) benign(0.002) TCGA-CD-8536-01 2 33359777 33359778 - T LTBP1 Intron 0.17 TCGA-CD-8536-01 2 47288044 47288044 G T TTC7A Missense_Mutation p.E763D 0.23 tolerated(0.17) benign(0.074) TCGA-CD-8536-01 2 64111166 64111166 A - UGP2 Frame_Shift_Del p.I174Yfs*10 0.27 TCGA-CD-8536-01 2 65248137 65248137 G A SLC1A4 Missense_Mutation p.E486K 0.19 tolerated(0.18) benign(0.003) TCGA-CD-8536-01 2 70162550 70162550 C T MXD1 Nonsense_Mutation p.R91* 0.17 TCGA-CD-8536-01 2 71297913 71297913 G A NAGK Missense_Mutation p.V99M 0.24 deleterious(0) probably_damaging(0.985) TCGA-CD-8536-01 2 73491645 73491645 G A FBXO41 Missense_Mutation p.R523C 0.18 deleterious(0) benign(0.005) TCGA-CD-8536-01 2 74657143 74657143 A G RTKN Silent p.F189F 0.19 TCGA-CD-8536-01 2 74750531 74750531 G A DQX1 Missense_Mutation p.A317V 0.17 tolerated(0.22) benign(0.001) TCGA-CD-8536-01 2 85097573 85097573 C T TRABD2A Missense_Mutation p.A149T 0.18 deleterious(0.03) probably_damaging(0.993) TCGA-CD-8536-01 2 85536191 85536191 A G TCF7L1 Missense_Mutation p.Y458C 0.20 deleterious(0) possibly_damaging(0.617) TCGA-CD-8536-01 2 85628352 85628352 G A CAPG Missense_Mutation p.T151I 0.24 deleterious(0.01) benign(0.407) TCGA-CD-8536-01 2 86258545 86258545 C T POLR1A Missense_Mutation p.E1496K 0.26 tolerated(0.46) benign(0.022) TCGA-CD-8536-01 2 89309954 89309954 T C IGKV1-9 Translation_Start_Site p.M1? 0.21 tolerated_low_confidence(0.06) benign(0.112) TCGA-CD-8536-01 2 97757268 97757268 T C FAHD2B Missense_Mutation p.D59G 0.25 tolerated(0.09) benign(0.309) TCGA-CD-8536-01 3 101477150 101477150 C T CEP97 Missense_Mutation p.A567V 0.23 deleterious(0) probably_damaging(0.986) TCGA-CD-8536-01 3 112724792 112724792 G A C3orf17 Missense_Mutation p.S432L 0.16 tolerated(0.37) benign(0.019) TCGA-CD-8536-01 3 114070565 114070565 G A ZBTB20 Silent p.C120C 0.28 TCGA-CD-8536-01 3 119211200 119211200 A T POGLUT1 Missense_Mutation p.E365V 0.24 deleterious(0.01) possibly_damaging(0.493) TCGA-CD-8536-01 3 122591444 122591444 G T DIRC2 Nonsense_Mutation p.E441* 0.24 TCGA-CD-8536-01 3 123005567 123005567 G A ADCY5 Missense_Mutation p.R1208C 0.22 deleterious(0) probably_damaging(1) TCGA-CD-8536-01 3 124196165 124196165 C T KALRN Missense_Mutation p.A1390V 0.24 deleterious(0) benign(0.261) TCGA-CD-8536-01 3 124416461 124416461 G A AC080008.1 5'Flank 0.18 TCGA-CD-8536-01 3 124802725 124802725 G C SLC12A8 3'UTR 0.29 TCGA-CD-8536-01 3 124909345 124909345 C T SLC12A8 Silent p.Q24Q 0.19 TCGA-CD-8536-01 3 12626629 12626629 G A RAF1 Nonsense_Mutation p.R554* 0.28 TCGA-CD-8536-01 3 129293232 129293232 G A PLXND1 Missense_Mutation p.R878W 0.40 deleterious(0) possibly_damaging(0.696) TCGA-CD-8536-01 3 133329880 133329880 T - TOPBP1 Frame_Shift_Del p.I1381Sfs*61 0.11 TCGA-CD-8536-01 3 134080596 134080596 G A AMOTL2 Missense_Mutation p.R445C 0.50 deleterious(0) probably_damaging(0.999) TCGA-CD-8536-01 3 136342004 136342004 C T STAG1 Missense_Mutation p.R39H 0.08 deleterious(0.01) probably_damaging(0.964) TCGA-CD-8536-01 3 137729028 137729028 C T CLDN18 5'UTR 0.40 TCGA-CD-8536-01 3 137822444 137822444 G A DZIP1L Missense_Mutation p.R124C 0.32 deleterious(0) probably_damaging(0.956) TCGA-CD-8536-01 3 140167465 140167465 G A CLSTN2 Missense_Mutation p.V298I 0.33 tolerated(0.07) benign(0) TCGA-CD-8536-01 3 147128364 147128364 G A ZIC1 Silent p.S155S 0.30 TCGA-CD-8536-01 3 148871345 148871345 C T HPS3 Missense_Mutation p.A437V 0.36 tolerated(0.09) probably_damaging(0.971) TCGA-CD-8536-01 3 148939579 148939579 T - CP Frame_Shift_Del p.M1? 0.22 TCGA-CD-8536-01 3 158520106 158520106 T C MFSD1 Splice_Site p.X104_splice 0.33 TCGA-CD-8536-01 3 160804229 160804229 T - B3GALNT1 Frame_Shift_Del p.K105Sfs*14 0.29 TCGA-CD-8536-01 3 164906575 164906575 G A SLITRK3 Missense_Mutation p.R682C 0.14 deleterious(0) possibly_damaging(0.828) TCGA-CD-8536-01 3 178947200 178947200 A G PIK3CA Missense_Mutation p.Q879R 0.19 tolerated(0.49) benign(0.011) TCGA-CD-8536-01 3 182683470 182683470 T G DCUN1D1 Silent p.T25T 0.06 TCGA-CD-8536-01 3 183824545 183824545 C - HTR3E 3'Flank 0.25 TCGA-CD-8536-01 3 184428608 184428608 C T MAGEF1 3'UTR 0.14 TCGA-CD-8536-01 3 18458392 18458392 A G SATB1 Splice_Site p.X130_splice 0.22 TCGA-CD-8536-01 3 186272478 186272478 A G TBCCD1 Missense_Mutation p.L370P 0.12 deleterious(0) probably_damaging(0.936) TCGA-CD-8536-01 3 195295967 195295967 T C APOD Missense_Mutation p.Y125C 0.34 deleterious(0.02) probably_damaging(1) TCGA-CD-8536-01 3 195597270 195597270 G T TNK2 Intron 0.23 TCGA-CD-8536-01 3 195698267 195698267 G A SDHAP1 RNA 0.07 TCGA-CD-8536-01 3 196386837 196386837 G A NRROS Missense_Mutation p.R108H 0.10 tolerated(0.76) benign(0.007) TCGA-CD-8536-01 3 196746400 196746400 G A MFI2 Intron 0.14 TCGA-CD-8536-01 3 20136884 20136884 A G KAT2B Missense_Mutation p.Y187C 0.28 deleterious(0) probably_damaging(0.991) TCGA-CD-8536-01 3 27761703 27761703 C - EOMES Frame_Shift_Del p.G332Afs*4 0.18 TCGA-CD-8536-01 3 28361200 28361200 A G CMC1 3'UTR 0.09 TCGA-CD-8536-01 3 32932852 32932852 C T TRIM71 Missense_Mutation p.T719M 0.24 deleterious(0) probably_damaging(0.999) TCGA-CD-8536-01 3 33194911 33194911 C T SUSD5 Missense_Mutation p.V405I 0.13 tolerated(0.56) benign(0.003) TCGA-CD-8536-01 3 38125694 38125694 C T DLEC1 Nonsense_Mutation p.R407* 0.16 TCGA-CD-8536-01 3 39229878 39229878 C T XIRP1 Silent p.A353A 0.26 TCGA-CD-8536-01 3 42569498 42569498 G A VIPR1 Silent p.T173T 0.24 TCGA-CD-8536-01 3 42659102 42659102 A - NKTR Frame_Shift_Del p.T35Hfs*38 0.15 TCGA-CD-8536-01 3 42660575 42660575 G A NKTR Missense_Mutation p.R66H 0.19 deleterious_low_confidence(0) unknown(0) TCGA-CD-8536-01 3 42740617 42740617 C A HHATL Missense_Mutation p.W65C 0.18 deleterious(0) probably_damaging(0.999) TCGA-CD-8536-01 3 44841893 44841893 T C KIF15 Missense_Mutation p.S396P 0.25 tolerated(0.13) benign(0.355) TCGA-CD-8536-01 3 45127478 45127479 - T CDCP1 Frame_Shift_Ins p.F722Vfs*9 0.11 TCGA-CD-8536-01 3 45134843 45134843 C T CDCP1 Missense_Mutation p.R518H 0.22 deleterious(0.01) probably_damaging(0.991) TCGA-CD-8536-01 3 46496879 46496879 A T LTF Missense_Mutation p.F185I 0.15 deleterious(0.01) possibly_damaging(0.447) TCGA-CD-8536-01 3 48481699 48481699 C T TMA7 5'UTR 0.22 TCGA-CD-8536-01 3 49212180 49212180 C T KLHDC8B Missense_Mutation p.R183C 0.16 deleterious(0) probably_damaging(0.999) TCGA-CD-8536-01 3 50231006 50231006 C T GNAT1 Missense_Mutation p.S120L 0.13 tolerated(0.36) benign(0.155) TCGA-CD-8536-01 3 50339849 50339849 C T HYAL1 Missense_Mutation p.R180Q 0.19 tolerated(0.68) benign(0.026) TCGA-CD-8536-01 3 50609606 50609606 G A HEMK1 Silent p.V127V 0.27 TCGA-CD-8536-01 3 51457448 51457448 T - VPRBP Frame_Shift_Del p.K563Nfs*16 0.23 TCGA-CD-8536-01 3 51979583 51979583 C T PARP3 Missense_Mutation p.P319S 0.21 deleterious(0.01) possibly_damaging(0.807) TCGA-CD-8536-01 3 52441201 52441201 G T BAP1 Missense_Mutation p.P190H 0.11 deleterious(0) probably_damaging(1) TCGA-CD-8536-01 3 52441246 52441246 G T BAP1 Missense_Mutation p.P175H 0.28 deleterious(0) probably_damaging(1) TCGA-CD-8536-01 3 52651438 52651438 T - PBRM1 Frame_Shift_Del p.K553Rfs*16 0.26 TCGA-CD-8536-01 3 52682389 52682390 AA - PBRM1 Frame_Shift_Del p.Y262* 0.23 TCGA-CD-8536-01 3 53381586 53381586 G A DCP1A 5'UTR 0.22 TCGA-CD-8536-01 3 53769406 53769406 G A CACNA1D Missense_Mutation p.R896H 0.20 deleterious(0) probably_damaging(0.998) TCGA-CD-8536-01 3 58083690 58083690 A G FLNB Missense_Mutation p.D378G 0.18 deleterious(0) possibly_damaging(0.88) TCGA-CD-8536-01 3 63981832 63981832 C - ATXN7 Frame_Shift_Del p.T781Pfs*11 0.23 TCGA-CD-8536-01 3 8578959 8578959 A G LMCD1 Missense_Mutation p.M74V 0.23 tolerated(0.21) benign(0.009) TCGA-CD-8536-01 3 9695311 9695311 C T MTMR14 Missense_Mutation p.R56C 0.22 tolerated(0.06) benign(0.425) TCGA-CD-8536-01 3 9952628 9952628 C T IL17RE Silent p.R294R 0.21 TCGA-CD-8536-01 4 101947137 101947137 G A PPP3CA Missense_Mutation p.P484L 0.05 deleterious(0) probably_damaging(0.999) TCGA-CD-8536-01 4 101947156 101947156 G A PPP3CA Nonsense_Mutation p.R478* 0.06 TCGA-CD-8536-01 4 108575885 108575885 C T PAPSS1 Nonsense_Mutation p.W356* 0.22 TCGA-CD-8536-01 4 109674128 109674128 C A ETNPPL Missense_Mutation p.D181Y 0.09 deleterious(0.02) probably_damaging(0.971) TCGA-CD-8536-01 4 110433166 110433166 G A SEC24B Silent p.T610T 0.25 TCGA-CD-8536-01 4 114823938 114823938 T - ARSJ Frame_Shift_Del p.N431Mfs*86 0.18 TCGA-CD-8536-01 4 123274120 123274120 C T KIAA1109 Silent p.H4637H 0.23 TCGA-CD-8536-01 4 134073842 134073842 G A PCDH10 Silent p.E849E 0.17 TCGA-CD-8536-01 4 153249361 153249361 T - FBXW7 Frame_Shift_Del p.R473Efs*25 0.18 TCGA-CD-8536-01 4 154633694 154633694 C T RNF175 Missense_Mutation p.V267I 0.16 tolerated(0.13) benign(0.029) TCGA-CD-8536-01 4 155507102 155507102 C A FGA Missense_Mutation p.E493D 0.21 tolerated(1) benign(0.023) TCGA-CD-8536-01 4 158224833 158224833 G T GRIA2 Missense_Mutation p.G120V 0.20 tolerated(0.33) benign(0.277) TCGA-CD-8536-01 4 159590811 159590811 C T C4orf46 Missense_Mutation p.R99Q 0.26 deleterious_low_confidence(0.02) benign(0.001) TCGA-CD-8536-01 4 1730345 1730345 G A TACC3 Missense_Mutation p.D406N 0.07 tolerated(0.06) benign(0.234) TCGA-CD-8536-01 4 177100674 177100674 G T WDR17 Missense_Mutation p.A1305S 0.23 tolerated(0.1) probably_damaging(0.995) TCGA-CD-8536-01 4 183721399 183721399 G A TENM3 Silent p.Q2665Q 0.17 TCGA-CD-8536-01 4 183721417 183721417 C T TENM3 Silent p.Y2671Y 0.21 TCGA-CD-8536-01 4 187517784 187517784 C T FAT1 Missense_Mutation p.V4304M 0.21 probably_damaging(0.999) TCGA-CD-8536-01 4 187541450 187541450 C T FAT1 Missense_Mutation p.G2097D 0.21 benign(0.319) TCGA-CD-8536-01 4 1980559 1980559 C - WHSC1 Frame_Shift_Del p.P1343Qfs*49 0.34 TCGA-CD-8536-01 4 22422644 22422644 G A GPR125 Silent p.T558T 0.23 TCGA-CD-8536-01 4 22749375 22749375 C T GBA3 Missense_Mutation p.T248I 0.19 deleterious(0.01) benign(0) TCGA-CD-8536-01 4 3418713 3418713 C T RGS12 Missense_Mutation p.A834V 0.26 deleterious(0) benign(0.296) TCGA-CD-8536-01 4 3432638 3432638 C T RGS12 Missense_Mutation p.P1357L 0.25 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CD-8536-01 4 3949870 3949870 G A FAM86EP RNA 0.30 TCGA-CD-8536-01 4 47898565 47898565 C T NFXL1 Missense_Mutation p.R435Q 0.19 deleterious(0.03) benign(0.372) TCGA-CD-8536-01 4 53728652 53728652 C T RASL11B 5'UTR 0.16 TCGA-CD-8536-01 4 54324830 54324830 C T FIP1L1 Nonsense_Mutation p.R504* 0.22 TCGA-CD-8536-01 4 5990081 5990081 C G C4orf50 Missense_Mutation p.G473A 0.19 deleterious(0.01) possibly_damaging(0.772) TCGA-CD-8536-01 4 6107477 6107477 G A JAKMIP1 Missense_Mutation p.T116M 0.24 tolerated(0.08) possibly_damaging(0.632) TCGA-CD-8536-01 4 619660 619660 G A PDE6B Missense_Mutation p.R82H 0.18 tolerated(0.17) benign(0.114) TCGA-CD-8536-01 4 66270181 66270181 G A EPHA5 Silent p.S567S 0.33 TCGA-CD-8536-01 4 73280581 73280581 T C ADAMTS3 Silent p.S204S 0.21 TCGA-CD-8536-01 4 76842177 76842177 G A NAAA Missense_Mutation p.R256W 0.20 tolerated(0.07) benign(0.005) TCGA-CD-8536-01 4 79856323 79856323 C T PAQR3 Silent p.A100A 0.25 TCGA-CD-8536-01 4 8229128 8229128 G A SH3TC1 Silent p.L569L 0.21 TCGA-CD-8536-01 4 83966796 83966796 A - COPS4 Frame_Shift_Del p.A33Pfs*10 0.24 TCGA-CD-8536-01 4 86938374 86938374 C T MAPK10 3'UTR 0.20 TCGA-CD-8536-01 4 87746576 87746576 C T SLC10A6 Missense_Mutation p.A306T 0.17 tolerated(0.21) benign(0.017) TCGA-CD-8536-01 4 99399941 99399941 A - TSPAN5 Frame_Shift_Del p.F157Lfs*8 0.13 TCGA-CD-8536-01 5 112176017 112176017 G T APC Nonsense_Mutation p.E1576* 0.25 TCGA-CD-8536-01 5 112228760 112228760 G A ZRSR1 Missense_Mutation p.S475N 0.15 deleterious_low_confidence(0) unknown(0) TCGA-CD-8536-01 5 127599209 127599209 C T FBN2 Silent p.S2700S 0.07 TCGA-CD-8536-01 5 129521508 129521508 T - CHSY3 3'UTR 0.24 TCGA-CD-8536-01 5 134011749 134011749 G A SEC24A Silent p.T396T 0.18 TCGA-CD-8536-01 5 135207423 135207423 G A SLC25A48 Intron 0.28 TCGA-CD-8536-01 5 140024273 140024273 T C TMCO6 Missense_Mutation p.V439A 0.21 tolerated(0.14) benign(0.056) TCGA-CD-8536-01 5 140057274 140057274 C T HARS Missense_Mutation p.R232H 0.23 deleterious(0.03) benign(0.219) TCGA-CD-8536-01 5 140176173 140176173 G A PCDHA2 Missense_Mutation p.V542M 0.20 deleterious_low_confidence(0.03) benign(0.364) TCGA-CD-8536-01 5 140222368 140222368 G A PCDHA8 Missense_Mutation p.A488T 0.23 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-CD-8536-01 5 140230333 140230333 G A PCDHA9 Silent p.S751S 0.04 TCGA-CD-8536-01 5 140307927 140307927 C A PCDHAC1 Missense_Mutation p.L484M 0.22 deleterious(0) probably_damaging(0.984) TCGA-CD-8536-01 5 140346866 140346866 C T PCDHAC2 Missense_Mutation p.A172V 0.24 deleterious(0) probably_damaging(1) TCGA-CD-8536-01 5 140503476 140503476 C T PCDHB4 Silent p.R632R 0.34 TCGA-CD-8536-01 5 140553997 140553997 C T PCDHB7 Silent p.F527F 0.24 TCGA-CD-8536-01 5 140572677 140572677 C T PCDHB10 Silent p.G184G 0.18 TCGA-CD-8536-01 5 140580935 140580935 C T PCDHB11 Missense_Mutation p.R530C 0.23 deleterious_low_confidence(0.02) benign(0.052) TCGA-CD-8536-01 5 140744400 140744400 G A PCDHGA5 Missense_Mutation p.R168Q 0.23 tolerated_low_confidence(1) benign(0.003) TCGA-CD-8536-01 5 140811605 140811605 C T PCDHGA12 Missense_Mutation p.R427W 0.23 tolerated_low_confidence(0.19) benign(0.107) TCGA-CD-8536-01 5 140890602 140890602 C T PCDHGB6 Silent p.H885H 0.19 TCGA-CD-8536-01 5 141384531 141384531 G A GNPDA1 Missense_Mutation p.T187M 0.27 deleterious(0.03) probably_damaging(0.975) TCGA-CD-8536-01 5 141993589 141993589 C - FGF1 Frame_Shift_Del p.G35Afs*4 0.17 TCGA-CD-8536-01 5 149449434 149449434 A G CSF1R Splice_Site p.X504_splice 0.11 TCGA-CD-8536-01 5 149767629 149767629 C T TCOF1 Silent p.P1008P 0.23 TCGA-CD-8536-01 5 149901260 149901260 C T NDST1 Silent p.D148D 0.20 TCGA-CD-8536-01 5 15616115 15616115 T C FBXL7 Missense_Mutation p.S21P 0.24 deleterious_low_confidence(0) probably_damaging(0.91) TCGA-CD-8536-01 5 156381647 156381647 G T TIMD4 Missense_Mutation p.P60H 0.25 deleterious(0) probably_damaging(1) TCGA-CD-8536-01 5 167957129 167957129 G A FBLL1 Missense_Mutation p.R207H 0.31 deleterious(0.03) possibly_damaging(0.598) TCGA-CD-8536-01 5 175959484 175959484 G - RNF44 5'UTR 0.19 TCGA-CD-8536-01 5 176304559 176304559 C A UNC5A Missense_Mutation p.T497N 0.15 deleterious(0) probably_damaging(1) TCGA-CD-8536-01 5 176665443 176665443 C A NSD1 Missense_Mutation p.P1376H 0.25 deleterious(0) probably_damaging(0.984) TCGA-CD-8536-01 5 179229119 179229119 G A MGAT4B 5'UTR 0.22 TCGA-CD-8536-01 5 179306714 179306716 AGA - TBC1D9B In_Frame_Del p.F443del 0.26 TCGA-CD-8536-01 5 180219262 180219262 C T MGAT1 Missense_Mutation p.C237Y 0.18 probably_damaging(1) TCGA-CD-8536-01 5 26885832 26885832 G A CDH9 Silent p.C591C 0.26 TCGA-CD-8536-01 5 2748683 2748683 C T IRX2 Missense_Mutation p.R380H 0.31 deleterious(0) probably_damaging(0.991) TCGA-CD-8536-01 5 2749576 2749576 T C IRX2 Missense_Mutation p.D192G 0.24 deleterious(0) benign(0.063) TCGA-CD-8536-01 5 34925491 34925491 T C BRIX1 Missense_Mutation p.I318T 0.14 deleterious(0) benign(0.151) TCGA-CD-8536-01 5 37162611 37162611 T - C5orf42 Frame_Shift_Del p.K2549Rfs*4 0.22 TCGA-CD-8536-01 5 37198876 37198876 C T C5orf42 Silent p.A1200A 0.22 TCGA-CD-8536-01 5 376803 376803 C T AHRR Missense_Mutation p.A112V 0.14 tolerated(0.2) benign(0.056) TCGA-CD-8536-01 5 38885558 38885558 C A OSMR Missense_Mutation p.P271T 0.20 tolerated(0.69) benign(0.115) TCGA-CD-8536-01 5 40958136 40958136 T C C7 Missense_Mutation p.L421P 0.27 deleterious(0) probably_damaging(0.991) TCGA-CD-8536-01 5 41065464 41065464 C T MROH2B Silent p.V110V 0.27 TCGA-CD-8536-01 5 453975 453975 C T EXOC3 Silent p.Y285Y 0.13 TCGA-CD-8536-01 5 50685507 50685507 C T ISL1 Missense_Mutation p.A169V 0.29 tolerated(0.34) benign(0.015) TCGA-CD-8536-01 5 61747671 61747671 C T IPO11 Nonsense_Mutation p.R183* 0.24 TCGA-CD-8536-01 5 63256560 63256560 G A HTR1A Silent p.A329A 0.10 TCGA-CD-8536-01 5 64447642 64447643 CT - ADAMTS6 3'UTR 0.17 TCGA-CD-8536-01 5 65371014 65371014 C T ERBB2IP Missense_Mutation p.P1314S 0.16 tolerated(0.91) benign(0.008) TCGA-CD-8536-01 5 68504111 68504112 AG - CENPH Frame_Shift_Del p.R194Dfs*30 0.23 TCGA-CD-8536-01 5 68590648 68590648 C T CCDC125 Missense_Mutation p.R299Q 0.26 tolerated(0.07) benign(0.128) TCGA-CD-8536-01 5 70895580 70895580 G A MCCC2 Missense_Mutation p.V126I 0.15 tolerated_low_confidence(0.25) benign(0.06) TCGA-CD-8536-01 5 7789844 7789844 C T ADCY2 Silent p.R853R 0.17 TCGA-CD-8536-01 5 79732949 79732949 T A ZFYVE16 Missense_Mutation p.L149I 0.24 deleterious(0.01) benign(0.049) TCGA-CD-8536-01 5 89770030 89770030 C T MBLAC2 Missense_Mutation p.G27D 0.21 tolerated(0.21) benign(0.008) TCGA-CD-8536-01 5 94876525 94876525 T A TTC37 Missense_Mutation p.T138S 0.22 tolerated(0.08) benign(0.171) TCGA-CD-8536-01 6 101166009 101166009 C T ASCC3 Missense_Mutation p.G674D 0.25 tolerated(0.43) possibly_damaging(0.517) TCGA-CD-8536-01 6 10398529 10398529 G A TFAP2A 3'UTR 0.29 TCGA-CD-8536-01 6 10529736 10529736 A - GCNT2 Frame_Shift_Del p.T199Pfs*5 0.20 TCGA-CD-8536-01 6 106968176 106968176 G A AIM1 Silent p.P623P 0.06 TCGA-CD-8536-01 6 107391602 107391602 C - BEND3 Frame_Shift_Del p.D265Tfs*54 0.24 TCGA-CD-8536-01 6 10928675 10928675 C T SYCP2L Nonsense_Mutation p.Q494* 0.26 TCGA-CD-8536-01 6 110540978 110540978 C T CDC40 Missense_Mutation p.R416W 0.20 deleterious(0) probably_damaging(0.999) TCGA-CD-8536-01 6 111643876 111643876 G A REV3L Silent p.G2749G 0.23 TCGA-CD-8536-01 6 116559395 116559395 C T NT5DC1 Missense_Mutation p.R323C 0.18 tolerated(0.17) benign(0.008) TCGA-CD-8536-01 6 117622204 117622205 - A ROS1 Frame_Shift_Ins p.N2224Kfs*2 0.17 TCGA-CD-8536-01 6 117842739 117842739 G A DCBLD1 Missense_Mutation p.S171N 0.26 tolerated(0.15) benign(0.383) TCGA-CD-8536-01 6 127797067 127797067 G A SOGA3 Nonsense_Mutation p.Q702* 0.26 TCGA-CD-8536-01 6 131481276 131481276 A - AKAP7 Frame_Shift_Del p.K79Rfs*21 0.24 TCGA-CD-8536-01 6 132891868 132891868 C - TAAR6 Frame_Shift_Del p.L138Wfs*47 0.22 TCGA-CD-8536-01 6 133014300 133014300 T G VNN1 Missense_Mutation p.D230A 0.18 deleterious(0) possibly_damaging(0.814) TCGA-CD-8536-01 6 137323341 137323341 A C IL20RA Missense_Mutation p.L339R 0.20 tolerated(0.2) benign(0.023) TCGA-CD-8536-01 6 138531151 138531151 C T KIAA1244 Silent p.N108N 0.22 TCGA-CD-8536-01 6 138656009 138656009 C T KIAA1244 Missense_Mutation p.A2009V 0.19 deleterious(0.01) probably_damaging(0.997) TCGA-CD-8536-01 6 143093766 143093766 C A HIVEP2 Missense_Mutation p.G704W 0.24 deleterious(0) probably_damaging(0.983) TCGA-CD-8536-01 6 144999592 144999592 C T UTRN Silent p.D2510D 0.17 TCGA-CD-8536-01 6 146126844 146126844 A G FBXO30 Missense_Mutation p.L233S 0.20 tolerated(0.45) benign(0.001) TCGA-CD-8536-01 6 149773838 149773838 G T ZC3H12D Missense_Mutation p.P234H 0.27 deleterious(0) probably_damaging(1) TCGA-CD-8536-01 6 151907196 151907196 G A CCDC170 Missense_Mutation p.R422Q 0.21 tolerated(0.44) benign(0.263) TCGA-CD-8536-01 6 152675951 152675951 C T SYNE1 Missense_Mutation p.R3590Q 0.23 benign(0.011) TCGA-CD-8536-01 6 152823876 152823876 G A SYNE1 Silent p.D260D 0.24 TCGA-CD-8536-01 6 153347617 153347617 T G RGS17 Missense_Mutation p.M61L 0.14 tolerated(1) benign(0) TCGA-CD-8536-01 6 153347627 153347627 G A RGS17 Silent p.H57H 0.15 TCGA-CD-8536-01 6 155126535 155126535 T - SCAF8 Frame_Shift_Del p.H301Ifs*3 0.20 TCGA-CD-8536-01 6 158924920 158924920 G A TULP4 Missense_Mutation p.E1409K 0.17 deleterious_low_confidence(0.02) probably_damaging(0.998) TCGA-CD-8536-01 6 16327740 16327740 C T ATXN1 Missense_Mutation p.V268I 0.21 tolerated(0.2) benign(0.104) TCGA-CD-8536-01 6 165792789 165792789 G A PDE10A Missense_Mutation p.R627C 0.17 deleterious(0) probably_damaging(0.924) TCGA-CD-8536-01 6 25923979 25923979 G C SLC17A2 Missense_Mutation p.P62A 0.21 tolerated(0.41) benign(0.281) TCGA-CD-8536-01 6 27100889 27100889 T A HIST1H2AG Silent p.A13A 0.20 TCGA-CD-8536-01 6 28333983 28333983 G A ZKSCAN3 Missense_Mutation p.C513Y 0.20 deleterious(0) probably_damaging(1) TCGA-CD-8536-01 6 29080437 29080437 C T OR2J3 Missense_Mutation p.P257L 0.14 deleterious(0.01) possibly_damaging(0.794) TCGA-CD-8536-01 6 30308096 30308096 G A TRIM39 Missense_Mutation p.R284Q 0.15 tolerated_low_confidence(0.35) benign(0) TCGA-CD-8536-01 6 30653307 30653307 G A PPP1R18 Silent p.S163S 0.05 TCGA-CD-8536-01 6 3152846 3152846 G T BPHL 3'UTR 0.18 TCGA-CD-8536-01 6 31721141 31721142 - T MSH5 Frame_Shift_Ins p.L295Sfs*75 0.09 TCGA-CD-8536-01 6 31829888 31829888 C T NEU1 Silent p.P80P 0.26 TCGA-CD-8536-01 6 31857273 31857284 TCTTCCTCTTCT - EHMT2 In_Frame_Del p.E320_E323del 0.21 TCGA-CD-8536-01 6 32146318 32146318 C G RNF5 Silent p.G10G 0.13 TCGA-CD-8536-01 6 3273438 3273438 G A SLC22A23 Missense_Mutation p.R638C 0.23 deleterious(0.02) benign(0.429) TCGA-CD-8536-01 6 32810002 32810002 G A PSMB8 Missense_Mutation p.S149L 0.18 deleterious(0) possibly_damaging(0.59) TCGA-CD-8536-01 6 33146860 33146860 G A COL11A2 Missense_Mutation p.A448V 0.19 probably_damaging(0.916) TCGA-CD-8536-01 6 33287513 33287513 C T DAXX Silent p.V528V 0.31 TCGA-CD-8536-01 6 33289522 33289522 G A DAXX Silent p.L61L 0.25 TCGA-CD-8536-01 6 34360162 34360162 C T NUDT3 5'UTR 0.38 TCGA-CD-8536-01 6 35254165 35254165 G A ZNF76 Missense_Mutation p.R74H 0.18 tolerated(1) benign(0) TCGA-CD-8536-01 6 36710055 36710055 G A CPNE5 Missense_Mutation p.T591M 0.24 tolerated_low_confidence(0.11) benign(0.009) TCGA-CD-8536-01 6 38697694 38697695 - T DNAH8 Intron 0.25 TCGA-CD-8536-01 6 41038939 41038939 C T OARD1 Missense_Mutation p.R39H 0.21 tolerated(0.1) benign(0.029) TCGA-CD-8536-01 6 43023356 43023356 C A MRPL2 Missense_Mutation p.G211V 0.25 deleterious(0) probably_damaging(1) TCGA-CD-8536-01 6 43251421 43251421 C T TTBK1 Silent p.N981N 0.23 TCGA-CD-8536-01 6 43309880 43309880 G A ZNF318 Missense_Mutation p.R1116C 0.25 probably_damaging(0.979) TCGA-CD-8536-01 6 43415470 43415470 G A ABCC10 Missense_Mutation p.V1252M 0.24 deleterious(0) possibly_damaging(0.494) TCGA-CD-8536-01 6 43516071 43516071 C T XPO5 Missense_Mutation p.E663K 0.23 tolerated(0.12) benign(0.003) TCGA-CD-8536-01 6 44114623 44114623 G A TMEM63B Silent p.P274P 0.22 TCGA-CD-8536-01 6 52132745 52132745 G A MCM3 Missense_Mutation p.R709C 0.16 deleterious(0) possibly_damaging(0.836) TCGA-CD-8536-01 6 52369431 52369431 C A TRAM2 Missense_Mutation p.A333S 0.25 tolerated(0.46) benign(0.146) TCGA-CD-8536-01 6 56481118 56481119 - A DST Intron 0.21 TCGA-CD-8536-01 6 6007043 6007043 G - NRN1 5'UTR 0.18 TCGA-CD-8536-01 6 64415953 64415953 A - PHF3 Frame_Shift_Del p.V1137* 0.37 TCGA-CD-8536-01 6 70048893 70048893 G A BAI3 Missense_Mutation p.A1092T 0.04 tolerated(0.25) probably_damaging(0.993) TCGA-CD-8536-01 6 7229883 7229883 G A RREB1 Silent p.T517T 0.04 TCGA-CD-8536-01 6 76124559 76124559 T C FILIP1 Missense_Mutation p.R44G 0.25 deleterious(0.02) benign(0.074) TCGA-CD-8536-01 6 87966657 87966657 G T ZNF292 Nonsense_Mutation p.G1104* 0.23 TCGA-CD-8536-01 6 88854062 88854062 C T CNR1 Missense_Mutation p.R311H 0.18 tolerated(0.25) probably_damaging(1) TCGA-CD-8536-01 6 90337306 90337306 G A ANKRD6 Missense_Mutation p.R459H 0.22 deleterious(0.01) possibly_damaging(0.776) TCGA-CD-8536-01 6 99282792 99282792 A G POU3F2 Missense_Mutation p.S15G 0.26 tolerated_low_confidence(0.08) benign(0.001) TCGA-CD-8536-01 7 100084560 100084560 C T NYAP1 Missense_Mutation p.T62M 0.17 deleterious(0) probably_damaging(0.999) TCGA-CD-8536-01 7 100253163 100253163 C - ACTL6B Frame_Shift_Del p.G50Afs*40 0.15 TCGA-CD-8536-01 7 101944555 101944555 C T SH2B2 Missense_Mutation p.P284S 0.28 deleterious(0.01) possibly_damaging(0.757) TCGA-CD-8536-01 7 107198542 107198542 A - COG5 Frame_Shift_Del p.L69* 0.29 TCGA-CD-8536-01 7 107323940 107323940 A - SLC26A4 Frame_Shift_Del p.N322Ifs*22 0.33 TCGA-CD-8536-01 7 108137999 108137999 G T PNPLA8 Missense_Mutation p.L461I 0.31 deleterious(0) probably_damaging(0.999) TCGA-CD-8536-01 7 110763686 110763686 A - LRRN3 Frame_Shift_Del p.E288Sfs*4 0.17 TCGA-CD-8536-01 7 117292906 117292906 T - CFTR Frame_Shift_Del p.S1297Lfs*31 0.32 TCGA-CD-8536-01 7 117368281 117368281 T C CTTNBP2 Missense_Mutation p.K1306R 0.13 tolerated(0.62) benign(0.012) TCGA-CD-8536-01 7 117400559 117400559 G A CTTNBP2 Silent p.D1034D 0.39 TCGA-CD-8536-01 7 127253099 127253099 A T PAX4 Missense_Mutation p.L223H 0.17 deleterious(0.01) probably_damaging(0.961) TCGA-CD-8536-01 7 1275732 1275732 G A UNCX Missense_Mutation p.G239S 0.25 tolerated_low_confidence(0.59) unknown(0) TCGA-CD-8536-01 7 128486949 128486949 G A FLNC Silent p.R1426R 0.13 TCGA-CD-8536-01 7 128587855 128587855 G A IRF5 Missense_Mutation p.G287D 0.05 deleterious(0) probably_damaging(0.987) TCGA-CD-8536-01 7 128852380 128852380 C A SMO 3'UTR 0.33 TCGA-CD-8536-01 7 130353835 130353835 A G TSGA13 3'UTR 0.14 TCGA-CD-8536-01 7 134346535 134346536 - G BPGM Frame_Shift_Ins p.A94Gfs*16 0.13 TCGA-CD-8536-01 7 135286176 135286176 T C NUP205 Silent p.N811N 0.14 TCGA-CD-8536-01 7 137686444 137686444 A G CREB3L2 Missense_Mutation p.V3A 0.35 deleterious_low_confidence(0) benign(0.441) TCGA-CD-8536-01 7 139167678 139167678 C T KLRG2 Silent p.A237A 0.67 TCGA-CD-8536-01 7 147600678 147600678 G T CNTNAP2 Missense_Mutation p.W707L 0.31 deleterious(0) possibly_damaging(0.905) TCGA-CD-8536-01 7 148106550 148106550 G A CNTNAP2 Silent p.S1261S 0.34 TCGA-CD-8536-01 7 150498659 150498659 T C TMEM176A Silent p.D7D 0.05 TCGA-CD-8536-01 7 150557592 150557592 C - AOC1 Frame_Shift_Del p.L622Wfs*3 0.25 TCGA-CD-8536-01 7 150655428 150655428 A G KCNH2 Missense_Mutation p.L212P 0.88 tolerated(0.13) benign(0.003) TCGA-CD-8536-01 7 150768237 150768237 G A SLC4A2 Missense_Mutation p.V610M 0.37 deleterious(0.01) probably_damaging(0.966) TCGA-CD-8536-01 7 150814787 150814787 C T AGAP3 Missense_Mutation p.T210M 0.42 deleterious(0.04) possibly_damaging(0.842) TCGA-CD-8536-01 7 151866323 151866323 T C KMT2C Missense_Mutation p.I3155M 0.41 benign(0.04) TCGA-CD-8536-01 7 154561183 154561183 G A DPP6 Missense_Mutation p.A314T 0.10 deleterious(0) probably_damaging(1) TCGA-CD-8536-01 7 156589160 156589160 A - LMBR1 Frame_Shift_Del p.S116Pfs*8 0.26 TCGA-CD-8536-01 7 158536259 158536259 C T ESYT2 Silent p.S612S 0.16 TCGA-CD-8536-01 7 158711469 158711469 T C WDR60 Silent p.A610A 0.12 TCGA-CD-8536-01 7 20824574 20824574 G A SP8 Missense_Mutation p.H288Y 0.26 deleterious(0) benign(0.446) TCGA-CD-8536-01 7 21631029 21631029 T C DNAH11 Missense_Mutation p.V834A 0.20 benign(0.197) TCGA-CD-8536-01 7 2296638 2296638 C T SNX8 Silent p.T385T 0.13 TCGA-CD-8536-01 7 2687658 2687658 T G TTYH3 Missense_Mutation p.L231R 0.16 deleterious(0) probably_damaging(1) TCGA-CD-8536-01 7 27142045 27142045 A - HOXA2 Frame_Shift_Del p.P27Lfs*21 0.31 TCGA-CD-8536-01 7 29552339 29552339 C T CHN2 Silent p.D465D 0.12 TCGA-CD-8536-01 7 32594167 32594167 C T AVL9 Intron 0.32 TCGA-CD-8536-01 7 33573588 33573588 C T BBS9 Missense_Mutation p.A774V 0.35 tolerated(0.06) possibly_damaging(0.646) TCGA-CD-8536-01 7 36677463 36677463 C T AOAH Silent p.P148P 0.10 TCGA-CD-8536-01 7 39606049 39606049 A G YAE1D1 Missense_Mutation p.Q11R 0.33 tolerated(0.62) benign(0) TCGA-CD-8536-01 7 43916273 43916273 C T URGCP Missense_Mutation p.R930Q 0.12 tolerated(0.08) benign(0.141) TCGA-CD-8536-01 7 44079122 44079124 CTT - LINC00957 RNA 0.10 TCGA-CD-8536-01 7 44096385 44096385 C T DBNL Silent p.A119A 0.37 TCGA-CD-8536-01 7 44578698 44578698 C T NPC1L1 Missense_Mutation p.S433N 0.16 deleterious(0.03) possibly_damaging(0.71) TCGA-CD-8536-01 7 45930305 45930305 A - IGFBP1 Frame_Shift_Del p.K171Nfs*8 0.27 TCGA-CD-8536-01 7 47930278 47930278 G A PKD1L1 Missense_Mutation p.A846V 0.22 deleterious(0) probably_damaging(0.956) TCGA-CD-8536-01 7 5417124 5417124 G A TNRC18 Missense_Mutation p.T780M 0.26 probably_damaging(0.991) TCGA-CD-8536-01 7 55236277 55236277 A G EGFR Intron 0.17 TCGA-CD-8536-01 7 55467769 55467769 G A LANCL2 Missense_Mutation p.G217D 0.39 tolerated(0.77) benign(0.007) TCGA-CD-8536-01 7 5632672 5632672 G A FSCN1 Silent p.A35A 0.21 TCGA-CD-8536-01 7 57528734 57528734 C T ZNF716 Silent p.N189N 0.21 TCGA-CD-8536-01 7 57529298 57529298 G T ZNF716 Missense_Mutation p.E377D 0.14 deleterious(0.02) possibly_damaging(0.464) TCGA-CD-8536-01 7 6370791 6370791 G A FAM220A 5'UTR 0.38 TCGA-CD-8536-01 7 64168414 64168414 A G ZNF107 Missense_Mutation p.N578D 0.42 deleterious(0.01) benign(0.005) TCGA-CD-8536-01 7 64838871 64838871 G C ZNF92 5'UTR 0.23 TCGA-CD-8536-01 7 65223001 65223001 G A SNORA22 3'Flank 0.14 TCGA-CD-8536-01 7 65444731 65444731 G T GUSB Nonsense_Mutation p.Y188* 0.32 TCGA-CD-8536-01 7 66482881 66482881 G A TYW1 Silent p.A204A 0.13 TCGA-CD-8536-01 7 72717256 72717256 G T NSUN5 3'UTR 0.23 TCGA-CD-8536-01 7 73118501 73118501 C G STX1A Missense_Mutation p.R148P 0.16 deleterious(0) probably_damaging(0.947) TCGA-CD-8536-01 7 75651250 75651250 C G STYXL1 Missense_Mutation p.V76L 0.08 deleterious(0) probably_damaging(0.954) TCGA-CD-8536-01 7 84751151 84751151 A - SEMA3D Frame_Shift_Del p.P20Lfs*3 0.18 TCGA-CD-8536-01 7 888233 888233 A - SUN1 Intron 0.31 TCGA-CD-8536-01 7 88963200 88963201 - T ZNF804B Frame_Shift_Ins p.L303Ffs*9 0.18 TCGA-CD-8536-01 7 92161811 92161811 A - RBM48 Frame_Shift_Del p.K134Nfs*9 0.19 TCGA-CD-8536-01 7 94056367 94056367 T C COL1A2 Silent p.G1051G 0.21 TCGA-CD-8536-01 7 95499296 95499296 C T DYNC1I1 Missense_Mutation p.T176M 0.39 tolerated(0.19) possibly_damaging(0.72) TCGA-CD-8536-01 7 95661985 95661985 G A DYNC1I1 Missense_Mutation p.V392M 0.19 deleterious(0) possibly_damaging(0.689) TCGA-CD-8536-01 7 96653701 96653701 C T DLX5 Missense_Mutation p.G79S 0.19 tolerated(0.18) benign(0.022) TCGA-CD-8536-01 7 98524886 98524886 C T TRRAP Silent p.G1024G 0.17 TCGA-CD-8536-01 7 98988636 98988636 C T ARPC1B Silent p.G207G 0.36 TCGA-CD-8536-01 7 99704794 99704794 C T AP4M1 3'UTR 0.13 TCGA-CD-8536-01 7 99711274 99711274 G T TAF6 Missense_Mutation p.P158H 0.15 deleterious(0.01) possibly_damaging(0.846) TCGA-CD-8536-01 8 10395995 10395995 G - PRSS55 Frame_Shift_Del p.P253Lfs*18 0.16 TCGA-CD-8536-01 8 104388033 104388033 G A CTHRC1 Missense_Mutation p.G73D 0.16 deleterious(0) probably_damaging(1) TCGA-CD-8536-01 8 104432575 104432575 C T DCAF13 Nonsense_Mutation p.R204* 0.12 TCGA-CD-8536-01 8 10480280 10480282 GGA - RP1L1 In_Frame_Del p.S144del 0.18 TCGA-CD-8536-01 8 104922413 104922413 C T RIMS2 Missense_Mutation p.A559V 0.19 tolerated_low_confidence(0.37) benign(0.06) TCGA-CD-8536-01 8 105361069 105361069 G T DCSTAMP Missense_Mutation p.A97S 0.16 deleterious(0.03) benign(0.175) TCGA-CD-8536-01 8 118831994 118831994 G A EXT1 Missense_Mutation p.A486V 0.17 tolerated(0.92) benign(0.034) TCGA-CD-8536-01 8 121344953 121344953 G A COL14A1 Silent p.P1588P 0.08 TCGA-CD-8536-01 8 125580781 125580782 - A MTSS1 Intron 0.17 TCGA-CD-8536-01 8 142221621 142221621 C A SLC45A4 Missense_Mutation p.G773W 0.17 deleterious_low_confidence(0) benign(0.418) TCGA-CD-8536-01 8 142228980 142228980 G A SLC45A4 Silent p.I202I 0.17 TCGA-CD-8536-01 8 143994722 143994722 G A CYP11B2 Missense_Mutation p.A367V 0.15 deleterious(0) probably_damaging(0.997) TCGA-CD-8536-01 8 144103230 144103230 C T LY6E 3'UTR 0.17 TCGA-CD-8536-01 8 144776030 144776030 C A ZNF707 Missense_Mutation p.P149Q 0.26 tolerated(0.94) benign(0.001) TCGA-CD-8536-01 8 144990643 144990643 G A PLEC Missense_Mutation p.A4586V 0.16 probably_damaging(0.998) TCGA-CD-8536-01 8 144991652 144991652 G - PLEC Frame_Shift_Del p.Q4250Rfs*9 0.10 TCGA-CD-8536-01 8 145619858 145619858 C T CPSF1 Splice_Site p.X1189_splice 0.19 TCGA-CD-8536-01 8 145772647 145772647 G A ARHGAP39 Missense_Mutation p.A608V 0.13 deleterious(0.02) probably_damaging(0.999) TCGA-CD-8536-01 8 16921653 16921653 C T MICU3 Nonsense_Mutation p.R148* 0.14 TCGA-CD-8536-01 8 18490208 18490209 - A PSD3 Frame_Shift_Ins p.L775Ffs*6 0.16 TCGA-CD-8536-01 8 20007219 20007219 C T SLC18A1 Missense_Mutation p.G372R 0.22 deleterious(0) probably_damaging(0.999) TCGA-CD-8536-01 8 22458739 22458739 A G C8orf58 Missense_Mutation p.T129A 0.18 tolerated(1) benign(0) TCGA-CD-8536-01 8 25199952 25199952 A T DOCK5 Missense_Mutation p.D849V 0.28 tolerated(0.12) benign(0.009) TCGA-CD-8536-01 8 25240190 25240190 A - DOCK5 Frame_Shift_Del p.R1345Gfs*12 0.29 TCGA-CD-8536-01 8 25290055 25290055 G A KCTD9 Missense_Mutation p.L340F 0.06 tolerated(0.06) benign(0.392) TCGA-CD-8536-01 8 25290076 25290076 C G KCTD9 Missense_Mutation p.A333P 0.06 deleterious(0) benign(0.302) TCGA-CD-8536-01 8 27297930 27297930 C T PTK2B Missense_Mutation p.R671C 0.17 tolerated(0.07) benign(0.189) TCGA-CD-8536-01 8 27779548 27779548 C T SCARA5 Silent p.A152A 0.25 TCGA-CD-8536-01 8 2832067 2832067 G C CSMD1 Missense_Mutation p.H2882Q 0.10 benign(0.004) TCGA-CD-8536-01 8 28956670 28956670 T - KIF13B Frame_Shift_Del p.N1435Ifs*17 0.20 TCGA-CD-8536-01 8 30700523 30700523 A G TEX15 Missense_Mutation p.L2004S 0.19 deleterious(0) probably_damaging(0.999) TCGA-CD-8536-01 8 38187221 38187222 - T WHSC1L1 Frame_Shift_Ins p.T419Nfs*28 0.10 TCGA-CD-8536-01 8 41790166 41790166 G A KAT6A Missense_Mutation p.R1858C 0.18 unknown(0) TCGA-CD-8536-01 8 55540278 55540279 - T RP1 Frame_Shift_Ins p.P1282Sfs*2 0.15 TCGA-CD-8536-01 8 57358324 57358324 C T PENK Intron 0.17 TCGA-CD-8536-01 8 624006 624006 T A ERICH1 Nonsense_Mutation p.K116* 0.20 TCGA-CD-8536-01 8 62412012 62412012 A G CLVS1 Splice_Site p.X326_splice 0.16 TCGA-CD-8536-01 8 64099255 64099255 G A YTHDF3 Missense_Mutation p.S228N 0.14 tolerated(0.36) benign(0.032) TCGA-CD-8536-01 8 6612593 6612594 - A AGPAT5 Frame_Shift_Ins p.I258Nfs*6 0.17 TCGA-CD-8536-01 8 66988980 66988980 G A DNAJC5B Missense_Mutation p.A69T 0.19 tolerated(0.21) benign(0.005) TCGA-CD-8536-01 8 67425871 67425871 G T C8orf46 Nonsense_Mutation p.G147* 0.16 TCGA-CD-8536-01 8 67578046 67578046 T C VCPIP1 Missense_Mutation p.D383G 0.16 deleterious(0.02) benign(0.248) TCGA-CD-8536-01 8 8560453 8560453 C T CLDN23 Missense_Mutation p.A182V 0.22 tolerated(0.5) benign(0.038) TCGA-CD-8536-01 8 86178909 86178909 G A CA13 Missense_Mutation p.A143T 0.23 deleterious(0.01) possibly_damaging(0.656) TCGA-CD-8536-01 8 87656088 87656088 T C CNGB3 Missense_Mutation p.T357A 0.12 deleterious(0.01) possibly_damaging(0.457) TCGA-CD-8536-01 8 90958480 90958480 T - NBN Frame_Shift_Del p.K653Sfs*4 0.15 TCGA-CD-8536-01 8 90965628 90965628 C A NBN Missense_Mutation p.L563F 0.16 deleterious(0.01) benign(0.216) TCGA-CD-8536-01 8 91643842 91643842 G A TMEM64 Missense_Mutation p.R297W 0.18 deleterious(0) probably_damaging(0.999) TCGA-CD-8536-01 9 111698636 111698636 A - FAM206A Frame_Shift_Del p.T62Qfs*31 0.16 TCGA-CD-8536-01 9 112216795 112216795 G A PTPN3 Silent p.L117L 0.24 TCGA-CD-8536-01 9 113459693 113459694 - A MUSK Frame_Shift_Ins p.N194Kfs*16 0.21 TCGA-CD-8536-01 9 114124233 114124233 C T KIAA0368 3'UTR 0.22 TCGA-CD-8536-01 9 115598611 115598611 G T SNX30 Missense_Mutation p.G246C 0.22 deleterious(0.03) possibly_damaging(0.863) TCGA-CD-8536-01 9 115806400 115806400 T - ZFP37 Frame_Shift_Del p.K166Nfs*19 0.16 TCGA-CD-8536-01 9 116187323 116187323 C T C9orf43 Missense_Mutation p.R278C 0.25 deleterious(0.05) benign(0.436) TCGA-CD-8536-01 9 116764939 116764939 A C ZNF618 Missense_Mutation p.S151R 0.17 tolerated_low_confidence(0.23) benign(0.22) TCGA-CD-8536-01 9 117835903 117835903 C T TNC Missense_Mutation p.A1065T 0.15 tolerated(0.26) benign(0.045) TCGA-CD-8536-01 9 119461547 119461547 G A TRIM32 Missense_Mutation p.C509Y 0.23 tolerated(0.11) possibly_damaging(0.556) TCGA-CD-8536-01 9 124535109 124535109 G A DAB2IP Missense_Mutation p.D740N 0.25 tolerated(0.17) possibly_damaging(0.591) TCGA-CD-8536-01 9 124535602 124535602 G A DAB2IP Missense_Mutation p.R904H 0.27 deleterious(0.02) probably_damaging(0.998) TCGA-CD-8536-01 9 128117027 128117027 C T GAPVD1 Missense_Mutation p.R1249W 0.22 deleterious(0.01) probably_damaging(0.913) TCGA-CD-8536-01 9 129243681 129243681 A C MVB12B Missense_Mutation p.K264T 0.21 deleterious(0) probably_damaging(0.956) TCGA-CD-8536-01 9 130151311 130151311 C A GARNL3 Missense_Mutation p.L886I 0.25 tolerated_low_confidence(0.82) benign(0) TCGA-CD-8536-01 9 130269149 130269149 C T FAM129B Missense_Mutation p.S739N 0.06 tolerated_low_confidence(0.17) benign(0.019) TCGA-CD-8536-01 9 131036181 131036181 T - GOLGA2 Frame_Shift_Del p.N52Mfs*105 0.12 TCGA-CD-8536-01 9 131344828 131344828 G A SPTAN1 Missense_Mutation p.R548Q 0.26 tolerated(0.07) possibly_damaging(0.877) TCGA-CD-8536-01 9 131671529 131671529 A G LRRC8A Missense_Mutation p.N696D 0.28 tolerated(0.78) benign(0.038) TCGA-CD-8536-01 9 131709462 131709462 G A DOLK Nonsense_Mutation p.R41* 0.28 TCGA-CD-8536-01 9 13183518 13183518 C T MPDZ Missense_Mutation p.D850N 0.19 tolerated(0.08) possibly_damaging(0.76) TCGA-CD-8536-01 9 131904775 131904775 G A PPP2R4 Missense_Mutation p.A280T 0.16 deleterious(0.01) possibly_damaging(0.881) TCGA-CD-8536-01 9 133779537 133779537 C T FIBCD1 Missense_Mutation p.G434S 0.30 deleterious(0.01) probably_damaging(1) TCGA-CD-8536-01 9 135464750 135464750 G A BARHL1 Silent p.A275A 0.22 TCGA-CD-8536-01 9 135690075 135690075 C A AK8 Missense_Mutation p.R310M 0.19 deleterious(0.03) benign(0.325) TCGA-CD-8536-01 9 135771817 135771817 G A TSC1 Silent p.S1100S 0.31 TCGA-CD-8536-01 9 135982500 135982500 A G RALGDS Missense_Mutation p.V462A 0.24 deleterious(0.04) unknown(0) TCGA-CD-8536-01 9 135982538 135982538 G A RALGDS Silent p.L449L 0.27 TCGA-CD-8536-01 9 136217921 136217921 G A RPL7A Missense_Mutation p.D231N 0.21 tolerated(0.07) benign(0.028) TCGA-CD-8536-01 9 137622201 137622201 G A COL5A1 Silent p.T348T 0.21 TCGA-CD-8536-01 9 138395428 138395428 G A MRPS2 Missense_Mutation p.D114N 0.28 deleterious(0.04) probably_damaging(0.941) TCGA-CD-8536-01 9 139090568 139090568 G A LHX3 Silent p.R240R 0.19 TCGA-CD-8536-01 9 139397775 139397775 C T NOTCH1 Missense_Mutation p.V1676I 0.18 deleterious(0.01) possibly_damaging(0.474) TCGA-CD-8536-01 9 139741105 139741105 C T C9orf172 Missense_Mutation p.R747C 0.26 deleterious(0) probably_damaging(0.998) TCGA-CD-8536-01 9 140069815 140069815 G - ANAPC2 Frame_Shift_Del p.G711Afs*52 0.21 TCGA-CD-8536-01 9 19058441 19058441 A G HAUS6 Missense_Mutation p.I775T 0.21 deleterious(0) probably_damaging(0.999) TCGA-CD-8536-01 9 27190547 27190548 - C TEK Frame_Shift_Ins p.N452Kfs*4 0.21 TCGA-CD-8536-01 9 32542036 32542036 T C TOPORS Silent p.S829S 0.21 TCGA-CD-8536-01 9 34521482 34521482 C T ENHO Missense_Mutation p.S71N 0.18 deleterious_low_confidence(0) benign(0.383) TCGA-CD-8536-01 9 34690262 34690262 C T CCL19 Missense_Mutation p.V43M 0.12 deleterious(0) probably_damaging(0.97) TCGA-CD-8536-01 9 35736698 35736698 T C CREB3 Missense_Mutation p.I364T 0.20 deleterious(0.03) benign(0.187) TCGA-CD-8536-01 9 36112383 36112383 G A RECK Missense_Mutation p.R657H 0.19 deleterious(0) probably_damaging(0.989) TCGA-CD-8536-01 9 69200277 69200277 A - FOXD4L6 3'UTR 0.16 TCGA-CD-8536-01 9 70993145 70993145 A G PGM5 Missense_Mutation p.I98V 0.06 deleterious(0.01) possibly_damaging(0.573) TCGA-CD-8536-01 9 711335 711335 T C KANK1 Missense_Mutation p.M190T 0.22 deleterious(0.04) benign(0.005) TCGA-CD-8536-01 9 71849361 71849361 A G TJP2 Missense_Mutation p.T591A 0.26 deleterious(0.03) benign(0.012) TCGA-CD-8536-01 9 71853685 71853685 G A TJP2 Missense_Mutation p.V810M 0.20 deleterious(0) probably_damaging(0.994) TCGA-CD-8536-01 9 79635498 79635498 G A FOXB2 Missense_Mutation p.V310I 0.38 deleterious_low_confidence(0.04) probably_damaging(0.972) TCGA-CD-8536-01 9 79888209 79888211 CTT - VPS13A In_Frame_Del p.S815del 0.21 TCGA-CD-8536-01 9 8465463 8465463 T C PTPRD Intron 0.23 TCGA-CD-8536-01 9 85613288 85613288 A G RASEF Silent p.G599G 0.21 TCGA-CD-8536-01 9 86590561 86590561 G A HNRNPK Intron 0.33 TCGA-CD-8536-01 9 91617035 91617035 G A S1PR3 Missense_Mutation p.R307Q 0.07 deleterious(0.04) benign(0.024) TCGA-CD-8536-01 9 91793266 91793266 G A SHC3 Missense_Mutation p.A37V 0.30 tolerated(0.71) benign(0.001) TCGA-CD-8536-01 9 94172525 94172525 G A NFIL3 Silent p.D164D 0.15 TCGA-CD-8536-01 9 96326587 96326587 C A FAM120A Missense_Mutation p.S1041Y 0.24 deleterious_low_confidence(0.01) benign(0.424) TCGA-CD-8536-01 9 96428047 96428047 G A PHF2 Missense_Mutation p.V673M 0.04 tolerated(0.08) unknown(0) TCGA-CD-8536-01 X 107683318 107683318 C T COL4A5 5'UTR 0.41 TCGA-CD-8536-01 X 114537966 114537966 C T LUZP4 Nonsense_Mutation p.Q109* 0.42 TCGA-CD-8536-01 X 129349216 129349216 A - ZNF280C Frame_Shift_Del p.C644Afs*12 0.32 TCGA-CD-8536-01 X 141290907 141290907 C A MAGEC2 Silent p.V289V 0.44 TCGA-CD-8536-01 X 147010200 147010200 A G FMR1 Silent p.A98A 0.44 TCGA-CD-8536-01 X 153173237 153173237 G T ARHGAP4 Silent p.A969A 0.18 TCGA-CD-8536-01 X 153688859 153688859 C T PLXNA3 Silent p.C112C 0.53 TCGA-CD-8536-01 X 153880628 153880628 G A CTAG2 Missense_Mutation p.P183S 0.18 deleterious_low_confidence(0) unknown(0) TCGA-CD-8536-01 X 15657776 15657776 G A TMEM27 Missense_Mutation p.P141S 0.41 tolerated(0.12) possibly_damaging(0.586) TCGA-CD-8536-01 X 21995195 21995195 C T SMS Nonsense_Mutation p.R116* 0.08 TCGA-CD-8536-01 X 3228381 3228381 G A MXRA5 Silent p.A2621A 0.44 TCGA-CD-8536-01 X 44949994 44949994 C T KDM6A Missense_Mutation p.R1255W 0.31 deleterious(0) probably_damaging(0.999) TCGA-CD-8536-01 X 46618279 46618279 C A SLC9A7 Missense_Mutation p.E62D 0.45 tolerated(0.34) benign(0.217) TCGA-CD-8536-01 X 68749810 68749810 G A FAM155B 3'UTR 0.45 TCGA-CD-8536-01 X 70389350 70389350 G A NLGN3 Silent p.P650P 0.36 TCGA-CD-8536-01 X 70444365 70444365 G A GJB1 Missense_Mutation p.G270R 0.50 tolerated(0.73) benign(0.173) TCGA-CD-8536-01 X 73046663 73046663 G A XIST RNA 0.52 TCGA-CD-8536-01 X 73071762 73071762 A - XIST RNA 0.42 TCGA-CD-8536-01 X 75649082 75649082 T C MAGEE1 Silent p.D253D 0.39 TCGA-CD-8536-01 X 79943586 79943586 A G BRWD3 Silent p.G1282G 0.41 TCGA-CD-8536-01 X 96212916 96212916 G A DIAPH2 Silent p.A568A 0.59 TCGA-CD-8536-01 X 99943432 99943432 T C SYTL4 Silent p.E307E 0.45 TCGA-CD-8536-01 Y 14847975 14847975 A - USP9Y Frame_Shift_Del p.K274Sfs*7 0.32 TCGA-CD-A486-01 10 11312665 11312665 A G CELF2 Missense_Mutation p.T219A 0.26 deleterious(0) possibly_damaging(0.905) TCGA-CD-A486-01 10 17024557 17024557 G A CUBN Missense_Mutation p.R1541W 0.40 deleterious(0) probably_damaging(0.953) TCGA-CD-A486-01 10 62631320 62631320 C T RHOBTB1 Missense_Mutation p.E671K 0.28 tolerated(0.1) probably_damaging(0.991) TCGA-CD-A486-01 10 68857598 68857598 C T LRRTM3 3'UTR 0.32 TCGA-CD-A486-01 10 93247480 93247481 - A HECTD2 Frame_Shift_Ins p.I382Nfs*22 0.27 TCGA-CD-A486-01 10 94100524 94100524 G A MARCH5 Nonsense_Mutation p.W111* 0.18 TCGA-CD-A486-01 11 124294393 124294393 G A OR8B4 Silent p.I125I 0.38 TCGA-CD-A486-01 11 13743296 13743296 C T FAR1 Missense_Mutation p.R383C 0.37 deleterious(0) probably_damaging(0.969) TCGA-CD-A486-01 11 18124855 18124855 A G SAAL1 Silent p.D58D 0.22 TCGA-CD-A486-01 11 18159092 18159092 G A MRGPRX3 Missense_Mutation p.A115T 0.26 tolerated(0.12) possibly_damaging(0.775) TCGA-CD-A486-01 11 27149101 27149101 C A BBOX1 3'UTR 0.40 TCGA-CD-A486-01 11 33772191 33772191 C A FBXO3 Nonsense_Mutation p.E276* 0.11 TCGA-CD-A486-01 11 48285725 48285725 T A OR4X1 Missense_Mutation p.F105I 0.35 deleterious(0.01) possibly_damaging(0.839) TCGA-CD-A486-01 11 5602826 5602826 C T OR52B6 Silent p.I240I 0.44 TCGA-CD-A486-01 11 67075666 67075666 C T SSH3 Missense_Mutation p.R303C 0.32 deleterious(0.03) probably_damaging(0.996) TCGA-CD-A486-01 11 72465974 72465982 CGCCGCCCG - STARD10 In_Frame_Del p.A279_G281del 0.32 TCGA-CD-A486-01 12 101776879 101776879 G A UTP20 Missense_Mutation p.D2573N 0.14 tolerated_low_confidence(0.44) benign(0.001) TCGA-CD-A486-01 12 112485554 112485554 T C NAA25 Missense_Mutation p.R641G 0.40 tolerated(0.38) benign(0.034) TCGA-CD-A486-01 12 32949048 32949048 G A PKP2 Silent p.G828G 0.34 TCGA-CD-A486-01 12 6602054 6602054 C A MRPL51 Missense_Mutation p.G55V 0.39 deleterious(0) probably_damaging(0.994) TCGA-CD-A486-01 12 7647955 7647955 C T CD163 Missense_Mutation p.R381H 0.41 tolerated(0.18) benign(0.179) TCGA-CD-A486-01 13 114531555 114531555 C T GAS6 Missense_Mutation p.G425S 0.18 deleterious(0.01) possibly_damaging(0.554) TCGA-CD-A486-01 14 106320670 106320670 G A IGHM Silent p.S380S 0.14 TCGA-CD-A486-01 14 20849163 20849163 G A TEP1 Silent p.T1563T 0.34 TCGA-CD-A486-01 14 62463017 62463017 T G SYT16 Missense_Mutation p.C94G 0.49 tolerated_low_confidence(0.39) benign(0) TCGA-CD-A486-01 14 72055914 72055914 G T SIPA1L1 Missense_Mutation p.C442F 0.37 tolerated(0.62) benign(0.361) TCGA-CD-A486-01 14 81382854 81382854 C T CEP128 Missense_Mutation p.C13Y 0.38 tolerated(1) benign(0) TCGA-CD-A486-01 15 23811448 23811448 G A MKRN3 Silent p.S173S 0.53 TCGA-CD-A486-01 15 24921169 24921169 G A NPAP1 Missense_Mutation p.R52H 0.48 tolerated(0.25) possibly_damaging(0.715) TCGA-CD-A486-01 15 28511044 28511044 C T HERC2 Missense_Mutation p.G559R 0.33 probably_damaging(0.999) TCGA-CD-A486-01 15 44087347 44087347 C A SERINC4 Missense_Mutation p.V470F 0.41 deleterious(0.02) benign(0.114) TCGA-CD-A486-01 15 44853224 44853224 A G EIF3J Silent p.K218K 0.33 TCGA-CD-A486-01 15 48784739 48784739 G T FBN1 Missense_Mutation p.L925M 0.41 benign(0.202) TCGA-CD-A486-01 15 79748755 79748755 C T KIAA1024 Missense_Mutation p.T89M 0.34 deleterious(0) probably_damaging(0.999) TCGA-CD-A486-01 15 90227164 90227164 T A PEX11A Missense_Mutation p.N63I 0.44 deleterious(0) probably_damaging(1) TCGA-CD-A486-01 16 29922419 29922419 G T KCTD13 Silent p.L211L 0.15 TCGA-CD-A486-01 16 84228751 84228751 G A ADAD2 Silent p.S300S 0.45 TCGA-CD-A486-01 16 84456240 84456240 C T ATP2C2 Silent p.V260V 0.20 TCGA-CD-A486-01 17 1411489 1411489 G A INPP5K Missense_Mutation p.R196W 0.69 deleterious(0) probably_damaging(1) TCGA-CD-A486-01 17 26711555 26711555 G C SARM1 Missense_Mutation p.Q389H 0.42 deleterious(0) probably_damaging(0.999) TCGA-CD-A486-01 17 32964419 32964419 G A TMEM132E Missense_Mutation p.R708H 0.35 deleterious(0) probably_damaging(0.999) TCGA-CD-A486-01 17 38906791 38906791 G A KRT25 Missense_Mutation p.A339V 0.25 deleterious(0.02) possibly_damaging(0.713) TCGA-CD-A486-01 17 56284443 56284443 C A MKS1 Intron 0.17 TCGA-CD-A486-01 17 67170746 67170746 A G ABCA10 Splice_Site p.X1016_splice 0.16 TCGA-CD-A486-01 17 7578382 7578399 GAGCAGCGCTCATGGTGG - TP53 In_Frame_Del p.H178_S183del 0.44 TCGA-CD-A486-01 18 14763786 14763786 C T ANKRD30B Missense_Mutation p.R308C 0.07 tolerated(0.1) possibly_damaging(0.556) TCGA-CD-A486-01 18 65181636 65181636 T C DSEL Silent p.G80G 0.25 TCGA-CD-A486-01 19 17435646 17435646 C T ANO8 Missense_Mutation p.G1071R 0.62 tolerated_low_confidence(0.07) unknown(0) TCGA-CD-A486-01 19 20728057 20728057 A G ZNF737 Missense_Mutation p.C318R 0.28 deleterious(0) probably_damaging(1) TCGA-CD-A486-01 19 35791279 35791279 C A MAG Missense_Mutation p.D314E 0.12 tolerated(1) benign(0.002) TCGA-CD-A486-01 19 4954689 4954689 G A UHRF1 RNA 0.25 TCGA-CD-A486-01 19 58384402 58384403 TG - ZNF814 Frame_Shift_Del p.S786Ffs*15 0.20 TCGA-CD-A486-01 19 58452263 58452263 G A ZNF256 3'UTR 0.63 TCGA-CD-A486-01 1 12336133 12336133 C T VPS13D Nonsense_Mutation p.R830* 0.33 TCGA-CD-A486-01 1 2489866 2489866 A G TNFRSF14 Missense_Mutation p.N88S 0.34 deleterious(0) probably_damaging(0.956) TCGA-CD-A486-01 1 45480046 45480046 T C UROD Intron 0.12 TCGA-CD-A486-01 1 45798155 45798155 G A MUTYH Silent p.T229T 0.43 TCGA-CD-A486-01 1 89323104 89323104 G A GTF2B Missense_Mutation p.A201V 0.27 tolerated(0.29) benign(0.027) TCGA-CD-A486-01 20 13830887 13830887 C T SEL1L2 Missense_Mutation p.V520I 0.09 tolerated_low_confidence(0.12) benign(0.001) TCGA-CD-A486-01 20 40033524 40033524 A C CHD6 Silent p.P2619P 0.44 TCGA-CD-A486-01 21 16339457 16339457 T A NRIP1 Missense_Mutation p.I353F 0.28 tolerated(0.36) benign(0.045) TCGA-CD-A486-01 22 32498054 32498054 C T SLC5A1 Missense_Mutation p.R499C 0.50 deleterious(0) probably_damaging(0.999) TCGA-CD-A486-01 2 141092116 141092116 C T LRP1B Nonsense_Mutation p.W4043* 0.23 TCGA-CD-A486-01 2 176947089 176947089 G A EVX2 Silent p.S172S 0.47 TCGA-CD-A486-01 2 179517027 179517027 G A TTN Missense_Mutation p.P13059S 0.16 TCGA-CD-A486-01 2 179587262 179587262 G A TTN Missense_Mutation p.P7418S 0.13 TCGA-CD-A486-01 2 198949883 198949883 C T PLCL1 Missense_Mutation p.P548S 0.15 tolerated(0.45) benign(0) TCGA-CD-A486-01 2 216986888 216986888 G A XRCC5 Missense_Mutation p.E199K 0.22 tolerated(0.31) benign(0.008) TCGA-CD-A486-01 2 219564048 219564048 C G STK36 Missense_Mutation p.Q1261E 0.10 deleterious(0.04) benign(0.017) TCGA-CD-A486-01 2 37295943 37295943 G T HEATR5B Missense_Mutation p.S353Y 0.40 deleterious(0.02) possibly_damaging(0.905) TCGA-CD-A486-01 2 50280548 50280548 A G NRXN1 Missense_Mutation p.V1370A 0.30 tolerated(0.41) benign(0.006) TCGA-CD-A486-01 2 61021162 61021162 G A PAPOLG Missense_Mutation p.V609I 0.35 tolerated_low_confidence(0.36) benign(0.086) TCGA-CD-A486-01 2 67631114 67631114 C A ETAA1 Missense_Mutation p.P434T 0.37 tolerated(0.08) benign(0.104) TCGA-CD-A486-01 2 85629046 85629046 C T CAPG Missense_Mutation p.G20S 0.27 deleterious(0) probably_damaging(0.999) TCGA-CD-A486-01 2 97215165 97215165 C T ARID5A Silent p.I76I 0.34 TCGA-CD-A486-01 3 132172483 132172483 T C DNAJC13 Missense_Mutation p.L262S 0.41 deleterious(0) possibly_damaging(0.466) TCGA-CD-A486-01 3 142681730 142681730 C T PAQR9 Missense_Mutation p.R150H 0.43 tolerated(0.08) benign(0.009) TCGA-CD-A486-01 3 42251837 42251837 C T TRAK1 Intron 0.32 TCGA-CD-A486-01 3 48226154 48226154 G A CDC25A Silent p.D93D 0.58 TCGA-CD-A486-01 3 78680429 78680429 T C ROBO1 Missense_Mutation p.R1170G 0.40 tolerated(0.14) benign(0.104) TCGA-CD-A486-01 3 78685247 78685247 C A ROBO1 Missense_Mutation p.A1017S 0.13 tolerated(0.43) benign(0.337) TCGA-CD-A486-01 4 107165791 107165791 T A TBCK Silent p.T354T 0.08 TCGA-CD-A486-01 4 113568059 113568059 G A LARP7 Missense_Mutation p.G174E 0.32 deleterious(0) probably_damaging(1) TCGA-CD-A486-01 4 1696506 1696506 C T SLBP Missense_Mutation p.D231N 0.15 tolerated(1) benign(0.001) TCGA-CD-A486-01 4 186067969 186067969 C T SLC25A4 Silent p.A247A 0.42 TCGA-CD-A486-01 5 101834416 101834416 C T SLCO6A1 Missense_Mutation p.G45R 0.35 tolerated(0.62) benign(0) TCGA-CD-A486-01 5 113740306 113740306 G A KCNN2 Missense_Mutation p.A252T 0.41 tolerated(0.19) probably_damaging(0.972) TCGA-CD-A486-01 5 137548983 137548983 T C CDC23 Missense_Mutation p.M7V 0.31 tolerated_low_confidence(1) unknown(0) TCGA-CD-A486-01 5 140772559 140772559 C T PCDHGA8 Missense_Mutation p.A60V 0.27 tolerated_low_confidence(0.06) benign(0.099) TCGA-CD-A486-01 5 151178856 151178857 - A G3BP1 Frame_Shift_Ins p.V277Sfs*11 0.24 TCGA-CD-A486-01 5 17354528 17354528 G A CTD-2139B15.2 RNA 0.23 TCGA-CD-A486-01 5 32037440 32037440 G A PDZD2 Missense_Mutation p.R504H 0.63 deleterious(0) probably_damaging(0.999) TCGA-CD-A486-01 5 32089087 32089087 G A PDZD2 Missense_Mutation p.V1845I 0.51 tolerated(0.12) benign(0.011) TCGA-CD-A486-01 5 37020587 37020587 G A NIPBL Silent p.Q1679Q 0.08 TCGA-CD-A486-01 6 118953695 118953695 A G CEP85L Silent p.N54N 0.48 TCGA-CD-A486-01 6 126080738 126080738 C T HEY2 Silent p.A268A 0.14 TCGA-CD-A486-01 6 147635091 147635091 C T STXBP5 Missense_Mutation p.A406V 0.21 deleterious(0.03) benign(0.036) TCGA-CD-A486-01 6 17781532 17781532 G A KIF13A Missense_Mutation p.A1182V 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-CD-A486-01 6 38800107 38800107 C A DNAH8 Missense_Mutation p.Q1183K 0.06 possibly_damaging(0.715) TCGA-CD-A486-01 6 4133892 4133892 G T ECI2 Missense_Mutation p.A35E 0.17 deleterious(0.03) benign(0.326) TCGA-CD-A486-01 6 86350006 86350007 - TGT SYNCRIP In_Frame_Ins p.Y102_R103insN 0.25 TCGA-CD-A486-01 7 105732297 105732297 G T SYPL1 Missense_Mutation p.S245Y 0.40 tolerated(0.1) benign(0.413) TCGA-CD-A486-01 7 150417618 150417618 G A GIMAP1 Missense_Mutation p.E176K 0.61 tolerated(0.49) benign(0.216) TCGA-CD-A486-01 7 23682760 23682760 C T CCDC126 3'UTR 0.29 TCGA-CD-A486-01 7 30492600 30492603 GCAC - NOD1 Frame_Shift_Del p.V144Cfs*33 0.19 TCGA-CD-A486-01 7 51092871 51092871 C T COBL Missense_Mutation p.A1235T 0.60 tolerated(0.07) benign(0.141) TCGA-CD-A486-01 8 12948861 12948861 G C DLC1 Missense_Mutation p.A1274G 0.47 deleterious(0.05) benign(0.057) TCGA-CD-A486-01 8 27462602 27462602 G A CLU Missense_Mutation p.S223F 0.56 deleterious(0.02) benign(0.272) TCGA-CD-A486-01 8 40625170 40625170 C T ZMAT4 Missense_Mutation p.R61Q 0.73 tolerated(0.11) probably_damaging(0.943) TCGA-CD-A486-01 8 52321907 52321907 G A PXDNL Silent p.D759D 0.29 TCGA-CD-A486-01 8 90971067 90971067 G A NBN Missense_Mutation p.T337I 0.06 tolerated(0.08) benign(0.016) TCGA-CD-A486-01 9 113563164 113563164 C T MUSK Missense_Mutation p.R836C 0.30 deleterious(0) probably_damaging(1) TCGA-CD-A486-01 9 139405667 139405667 C A NOTCH1 Missense_Mutation p.G842W 0.21 deleterious(0) probably_damaging(1) TCGA-CD-A486-01 9 5922640 5922640 G T KIAA2026 Missense_Mutation p.A1119E 0.17 tolerated(0.37) possibly_damaging(0.553) TCGA-CD-A486-01 X 100809326 100809326 G A ARMCX1 3'UTR 0.72 TCGA-CD-A486-01 X 125685967 125685967 C T DCAF12L1 Missense_Mutation p.V209M 0.60 deleterious(0) possibly_damaging(0.788) TCGA-CD-A486-01 X 129190051 129190051 C T BCORL1 Silent p.Y1692Y 0.21 TCGA-CD-A486-01 X 19475123 19475123 C A MAP3K15 Missense_Mutation p.M301I 0.45 tolerated(1) probably_damaging(0.97) TCGA-CD-A486-01 X 43603414 43603414 C T MAOA Missense_Mutation p.S478L 0.18 tolerated(0.05) benign(0.391) TCGA-CD-A487-01 10 102737435 102737435 C T SEMA4G Missense_Mutation p.T128I 0.15 deleterious(0) possibly_damaging(0.826) TCGA-CD-A487-01 10 103898676 103898676 G A PPRC1 Missense_Mutation p.R177H 0.22 tolerated(0.07) probably_damaging(0.994) TCGA-CD-A487-01 10 106125738 106125738 A G CCDC147 Missense_Mutation p.K255R 0.12 tolerated(0.57) benign(0.007) TCGA-CD-A487-01 10 106209856 106209856 G A CCDC147 Missense_Mutation p.E802K 0.15 deleterious(0.04) benign(0.143) TCGA-CD-A487-01 10 119078468 119078468 G A PDZD8 Missense_Mutation p.S338F 0.22 deleterious(0) probably_damaging(0.999) TCGA-CD-A487-01 10 26993640 26993640 C A PDSS1 Missense_Mutation p.S66Y 0.18 tolerated_low_confidence(0.14) benign(0.312) TCGA-CD-A487-01 10 45799582 45799582 G A OR13A1 Missense_Mutation p.P97S 0.10 deleterious(0) probably_damaging(0.998) TCGA-CD-A487-01 10 48390461 48390461 C T RBP3 Silent p.P139P 0.24 TCGA-CD-A487-01 10 50819325 50819325 C T SLC18A3 Missense_Mutation p.A180V 0.12 tolerated(0.79) benign(0.015) TCGA-CD-A487-01 10 55569106 55569106 T A PCDH15 Missense_Mutation p.E502D 0.18 deleterious_low_confidence(0) unknown(0) TCGA-CD-A487-01 10 73574963 73574963 C T CDH23 Silent p.S1091S 0.12 TCGA-CD-A487-01 11 103027345 103027345 G A DYNC2H1 Missense_Mutation p.V1325I 0.15 benign(0.09) TCGA-CD-A487-01 11 114453678 114453678 G A NXPE4 Silent p.F54F 0.23 TCGA-CD-A487-01 11 118889853 118889853 T A TRAPPC4 Missense_Mutation p.V59E 0.11 deleterious(0) probably_damaging(0.982) TCGA-CD-A487-01 11 124949031 124949031 C T SLC37A2 Missense_Mutation p.P113L 0.18 deleterious(0.01) possibly_damaging(0.453) TCGA-CD-A487-01 11 46564896 46564896 C T AMBRA1 Missense_Mutation p.R224H 0.09 tolerated_low_confidence(0.06) probably_damaging(0.968) TCGA-CD-A487-01 11 46724788 46724788 G C ZNF408 Missense_Mutation p.C216S 0.19 tolerated(0.35) benign(0.004) TCGA-CD-A487-01 11 49221943 49221943 A G FOLH1 Missense_Mutation p.L92P 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-CD-A487-01 11 5020717 5020717 C T OR51L1 Missense_Mutation p.H169Y 0.14 tolerated(0.11) benign(0.417) TCGA-CD-A487-01 11 55406147 55406147 T G OR4P4 Missense_Mutation p.F105C 0.36 deleterious(0.01) probably_damaging(0.928) TCGA-CD-A487-01 11 55579654 55579654 T G OR5L1 Missense_Mutation p.F238V 0.16 deleterious(0) probably_damaging(0.933) TCGA-CD-A487-01 11 608145 608145 G A PHRF1 Missense_Mutation p.G896R 0.13 tolerated(0.24) benign(0.012) TCGA-CD-A487-01 11 65688402 65688402 A T DRAP1 Missense_Mutation p.Q157H 0.19 deleterious(0.02) unknown(0) TCGA-CD-A487-01 11 6913570 6913570 T G OR2D2 Missense_Mutation p.Q54H 0.21 tolerated(0.23) benign(0.002) TCGA-CD-A487-01 11 78383337 78383337 C T TENM4 Missense_Mutation p.R1845H 0.18 tolerated(0.09) probably_damaging(0.999) TCGA-CD-A487-01 11 9608313 9608313 A G WEE1 Missense_Mutation p.H566R 0.39 deleterious(0) possibly_damaging(0.845) TCGA-CD-A487-01 12 104049325 104049325 A C STAB2 Missense_Mutation p.K567T 0.14 tolerated(0.11) possibly_damaging(0.66) TCGA-CD-A487-01 12 10954798 10954798 C G TAS2R7 Missense_Mutation p.W124C 0.29 deleterious(0.01) possibly_damaging(0.903) TCGA-CD-A487-01 12 11091473 11091473 C T TAS2R14 Missense_Mutation p.A112T 0.25 deleterious(0.04) probably_damaging(0.941) TCGA-CD-A487-01 12 113603492 113603492 C T DDX54 Missense_Mutation p.R559Q 0.14 tolerated(0.06) benign(0.104) TCGA-CD-A487-01 12 118298219 118298219 G C KSR2 Nonsense_Mutation p.Y66* 0.14 TCGA-CD-A487-01 12 23908589 23908589 T G SOX5 Missense_Mutation p.N184T 0.20 deleterious(0.05) benign(0.2) TCGA-CD-A487-01 12 31132552 31132552 G A TSPAN11 Missense_Mutation p.G135R 0.25 tolerated(0.88) benign(0.02) TCGA-CD-A487-01 12 40668689 40668689 A G LRRK2 Missense_Mutation p.Y612C 0.26 tolerated(0.41) benign(0) TCGA-CD-A487-01 12 53433975 53433975 G C EIF4B Missense_Mutation p.D602H 0.21 deleterious_low_confidence(0.01) benign(0.209) TCGA-CD-A487-01 12 55420235 55420235 T G NEUROD4 Silent p.T4T 0.11 TCGA-CD-A487-01 12 88473003 88473003 G C CEP290 Missense_Mutation p.L1744V 0.26 probably_damaging(0.998) TCGA-CD-A487-01 13 38320315 38320315 G A TRPC4 Missense_Mutation p.T219I 0.31 deleterious(0) probably_damaging(1) TCGA-CD-A487-01 14 106539344 106539344 T G IGHV1-8 Missense_Mutation p.E29A 0.13 deleterious(0.01) probably_damaging(0.935) TCGA-CD-A487-01 14 24505773 24505773 T C RP11-468E2.9 RNA 0.38 TCGA-CD-A487-01 14 39646862 39646862 T A PNN Missense_Mutation p.D131E 0.22 tolerated(0.23) benign(0.259) TCGA-CD-A487-01 14 57268422 57268422 A C OTX2 3'UTR 0.15 TCGA-CD-A487-01 14 64518714 64518714 G T SYNE2 Nonsense_Mutation p.G2695* 0.14 TCGA-CD-A487-01 14 70925106 70925106 T C ADAM21 Missense_Mutation p.M297T 0.07 deleterious(0) benign(0.014) TCGA-CD-A487-01 15 23299687 23299687 G A HERC2P2 RNA 0.11 TCGA-CD-A487-01 15 27114465 27114465 T G GABRA5 Missense_Mutation p.L24V 0.17 tolerated_low_confidence(0.13) benign(0.002) TCGA-CD-A487-01 15 28196946 28196946 G A OCA2 Silent p.G645G 0.12 TCGA-CD-A487-01 15 33925224 33925224 T G RYR3 Missense_Mutation p.I981S 0.14 benign(0.05) TCGA-CD-A487-01 15 33954664 33954664 G T RYR3 Missense_Mutation p.D1645Y 0.23 possibly_damaging(0.781) TCGA-CD-A487-01 15 42560228 42560228 C G TMEM87A Missense_Mutation p.D70H 0.17 tolerated(0.13) possibly_damaging(0.519) TCGA-CD-A487-01 15 49083523 49083523 G C CEP152 Missense_Mutation p.Q295E 0.14 deleterious(0.02) benign(0.034) TCGA-CD-A487-01 15 65489129 65489129 C T CILP Silent p.Q1165Q 0.21 TCGA-CD-A487-01 15 90784534 90784534 G A GDPGP1 Missense_Mutation p.G132R 0.13 tolerated(0.06) probably_damaging(1) TCGA-CD-A487-01 16 4882044 4882044 G T GLYR1 Missense_Mutation p.S158Y 0.14 deleterious(0.01) benign(0.272) TCGA-CD-A487-01 16 58701249 58701249 G A SLC38A7 3'UTR 0.12 TCGA-CD-A487-01 17 11671866 11671866 G T DNAH9 Missense_Mutation p.D2423Y 0.13 probably_damaging(0.932) TCGA-CD-A487-01 17 17718001 17718001 C T SREBF1 Missense_Mutation p.R918Q 0.21 tolerated(1) benign(0.006) TCGA-CD-A487-01 17 29220647 29220647 G A ATAD5 Silent p.L1592L 0.24 TCGA-CD-A487-01 17 33966626 33966626 C G AP2B1 Missense_Mutation p.I428M 0.16 deleterious(0.03) benign(0.148) TCGA-CD-A487-01 17 34171905 34171905 C T TAF15 Silent p.D534D 0.23 TCGA-CD-A487-01 17 38319064 38319064 C T CASC3 Missense_Mutation p.S232F 0.08 deleterious(0) probably_damaging(0.981) TCGA-CD-A487-01 17 38324513 38324513 C T CASC3 Missense_Mutation p.P603L 0.08 deleterious(0) probably_damaging(0.999) TCGA-CD-A487-01 17 38324586 38324586 C T CASC3 Silent p.V627V 0.11 TCGA-CD-A487-01 17 38324639 38324639 C T CASC3 Missense_Mutation p.P645L 0.10 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-CD-A487-01 17 38325584 38325584 C T CASC3 Missense_Mutation p.S658L 0.06 deleterious(0) benign(0.37) TCGA-CD-A487-01 17 38325681 38325681 C T CASC3 Silent p.I690I 0.09 TCGA-CD-A487-01 17 39633174 39633174 G A KRT35 3'UTR 0.12 TCGA-CD-A487-01 17 39890671 39890671 C T HAP1 Silent p.S72S 0.12 TCGA-CD-A487-01 17 41290700 41290700 C G NBR2 RNA 0.32 TCGA-CD-A487-01 17 48619031 48619031 A G EPN3 Missense_Mutation p.K521E 0.14 deleterious(0.01) benign(0.036) TCGA-CD-A487-01 17 56326946 56326946 G A LPO Missense_Mutation p.A155T 0.18 deleterious(0.03) possibly_damaging(0.771) TCGA-CD-A487-01 17 57771331 57771331 G C CLTC 3'UTR 0.25 TCGA-CD-A487-01 17 74527570 74527570 T G CYGB Missense_Mutation p.K116T 0.18 tolerated(0.06) probably_damaging(0.927) TCGA-CD-A487-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.40 deleterious(0) probably_damaging(1) TCGA-CD-A487-01 17 80274791 80274791 G T CD7 Missense_Mutation p.T50N 0.38 deleterious(0.01) probably_damaging(0.96) TCGA-CD-A487-01 17 910419 910419 C T ABR Missense_Mutation p.D826N 0.27 deleterious(0.01) probably_damaging(0.937) TCGA-CD-A487-01 18 10689765 10689765 G A PIEZO2 Missense_Mutation p.A2349V 0.13 deleterious(0) benign(0.437) TCGA-CD-A487-01 18 12678251 12678251 C T CEP76 Missense_Mutation p.E494K 0.17 deleterious(0.03) possibly_damaging(0.466) TCGA-CD-A487-01 18 34850769 34850769 G A CELF4 Missense_Mutation p.A354V 0.18 tolerated(0.24) benign(0.002) TCGA-CD-A487-01 18 65178783 65178783 T C DSEL Silent p.G1031G 0.22 TCGA-CD-A487-01 18 76754298 76754298 G T SALL3 Silent p.T769T 0.13 TCGA-CD-A487-01 19 14069937 14069937 C T DCAF15 Missense_Mutation p.P289S 0.25 tolerated_low_confidence(0.41) benign(0.011) TCGA-CD-A487-01 19 16974355 16974355 C T SIN3B Intron 0.18 TCGA-CD-A487-01 19 22156505 22156505 T G ZNF208 Missense_Mutation p.K444T 0.15 deleterious(0.01) benign(0.099) TCGA-CD-A487-01 19 30308420 30308420 G A CCNE1 Missense_Mutation p.R145Q 0.05 deleterious(0) probably_damaging(1) TCGA-CD-A487-01 19 34263938 34263938 C T CHST8 Silent p.N415N 0.22 TCGA-CD-A487-01 19 41903737 41903737 C T BCKDHA Missense_Mutation p.A2V 0.22 deleterious_low_confidence(0.03) probably_damaging(0.98) TCGA-CD-A487-01 19 46124767 46124767 C T EML2 Missense_Mutation p.D525N 0.12 tolerated(0.45) benign(0.034) TCGA-CD-A487-01 19 53741699 53741699 A C ZNF677 Missense_Mutation p.F94C 0.63 tolerated(0.06) possibly_damaging(0.75) TCGA-CD-A487-01 19 5917643 5917643 C T RANBP3 Missense_Mutation p.G561E 0.48 deleterious_low_confidence(0) unknown(0) TCGA-CD-A487-01 1 110051073 110051073 G A AMIGO1 Silent p.F154F 0.27 TCGA-CD-A487-01 1 149903153 149903153 T A MTMR11 Missense_Mutation p.E430V 0.38 deleterious(0) possibly_damaging(0.89) TCGA-CD-A487-01 1 150786667 150786667 C T ARNT Missense_Mutation p.V667M 0.19 tolerated_low_confidence(0.78) benign(0.003) TCGA-CD-A487-01 1 151374315 151374315 G A PSMB4 3'UTR 0.29 TCGA-CD-A487-01 1 152327266 152327266 T C FLG2 Missense_Mutation p.Y999C 0.21 unknown(0) TCGA-CD-A487-01 1 152882716 152882716 A C IVL Missense_Mutation p.K148T 0.20 deleterious_low_confidence(0.01) unknown(0) TCGA-CD-A487-01 1 153661760 153661760 G A NPR1 Silent p.A887A 0.12 TCGA-CD-A487-01 1 158654936 158654936 A C SPTA1 Missense_Mutation p.L76V 0.24 tolerated(0.12) benign(0.001) TCGA-CD-A487-01 1 159015246 159015246 T G IFI16 Missense_Mutation p.L497V 0.13 tolerated(0.49) benign(0.188) TCGA-CD-A487-01 1 159505764 159505764 A C OR10J5 Missense_Mutation p.F12V 0.20 deleterious(0) possibly_damaging(0.721) TCGA-CD-A487-01 1 160389129 160389129 G A VANGL2 Missense_Mutation p.R177H 0.12 deleterious(0) probably_damaging(0.999) TCGA-CD-A487-01 1 169582271 169582271 G A SELP Missense_Mutation p.S224L 0.20 deleterious(0) probably_damaging(0.97) TCGA-CD-A487-01 1 198685876 198685876 A C PTPRC Missense_Mutation p.T453P 0.19 deleterious(0) probably_damaging(0.974) TCGA-CD-A487-01 1 201751367 201751367 G A NAV1 Missense_Mutation p.R576H 0.28 deleterious(0.02) probably_damaging(1) TCGA-CD-A487-01 1 202407143 202407143 C A PPP1R12B Missense_Mutation p.N483K 0.17 deleterious(0.01) benign(0.031) TCGA-CD-A487-01 1 208257739 208257739 A G PLXNA2 Missense_Mutation p.C762R 0.40 deleterious(0) probably_damaging(0.974) TCGA-CD-A487-01 1 215914777 215914777 T C USH2A Missense_Mutation p.E3884G 0.14 benign(0.02) TCGA-CD-A487-01 1 216850642 216850642 G A ESRRG Missense_Mutation p.P88L 0.23 deleterious(0.05) benign(0.124) TCGA-CD-A487-01 1 227222430 227222430 T - CDC42BPA Frame_Shift_Del p.K1099Nfs*22 0.17 TCGA-CD-A487-01 1 247769014 247769014 T G OR2G3 Missense_Mutation p.F43V 0.13 tolerated(0.12) benign(0.002) TCGA-CD-A487-01 1 247902546 247902546 T A OR14K1 Silent p.V210V 0.14 TCGA-CD-A487-01 1 247920983 247920983 G A OR1C1 Silent p.S242S 0.18 TCGA-CD-A487-01 1 248551653 248551653 G A OR2T6 Silent p.V248V 0.14 TCGA-CD-A487-01 1 35885312 35885312 G T ZMYM4 3'UTR 0.22 TCGA-CD-A487-01 1 74507272 74507272 A C LRRIQ3 Missense_Mutation p.V448G 0.16 tolerated(0.25) benign(0.002) TCGA-CD-A487-01 1 85331706 85331706 A C LPAR3 Missense_Mutation p.V33G 0.19 tolerated(0.13) benign(0.125) TCGA-CD-A487-01 20 13098334 13098334 A C SPTLC3 Missense_Mutation p.S372R 0.15 deleterious(0.02) probably_damaging(1) TCGA-CD-A487-01 20 31625387 31625387 A G BPIFB6 Missense_Mutation p.K230R 0.10 tolerated(0.13) benign(0.001) TCGA-CD-A487-01 20 33842556 33842556 C T MMP24 Silent p.D272D 0.12 TCGA-CD-A487-01 20 3653524 3653524 G A ADAM33 Silent p.F385F 0.25 TCGA-CD-A487-01 20 47679792 47679792 T A CSE1L Missense_Mutation p.L47M 0.14 deleterious(0.04) probably_damaging(0.986) TCGA-CD-A487-01 20 56078626 56078626 C T CTCFL Missense_Mutation p.G569E 0.16 tolerated(0.43) benign(0.01) TCGA-CD-A487-01 20 60859112 60859112 C T OSBPL2 Missense_Mutation p.L295F 0.07 deleterious(0.04) probably_damaging(0.983) TCGA-CD-A487-01 20 61942989 61942989 C T COL20A1 Missense_Mutation p.R518W 0.26 tolerated(0.07) benign(0.022) TCGA-CD-A487-01 20 62848470 62848470 G A MYT1 Missense_Mutation p.R561Q 0.14 probably_damaging(0.951) TCGA-CD-A487-01 21 19666630 19666630 C T TMPRSS15 Missense_Mutation p.V815I 0.14 tolerated(0.63) benign(0.088) TCGA-CD-A487-01 21 31797958 31797958 A T KRTAP13-3 Silent p.S91S 0.17 TCGA-CD-A487-01 21 38529049 38529049 T C TTC3 Missense_Mutation p.Y945H 0.14 deleterious(0) probably_damaging(1) TCGA-CD-A487-01 21 46914475 46914475 G A COL18A1 Missense_Mutation p.R970Q 0.20 probably_damaging(0.994) TCGA-CD-A487-01 22 26423267 26423267 G A MYO18B Missense_Mutation p.D2443N 0.21 deleterious(0.03) probably_damaging(0.956) TCGA-CD-A487-01 22 27019290 27019290 G A CRYBA4 Silent p.V44V 0.25 TCGA-CD-A487-01 22 29885531 29885531 C A NEFH Silent p.S634S 0.13 TCGA-CD-A487-01 22 37462911 37462911 G A TMPRSS6 Silent p.R744R 0.15 TCGA-CD-A487-01 22 39148610 39148610 G A SUN2 Silent p.L8L 0.28 TCGA-CD-A487-01 22 40415897 40415897 C T FAM83F Missense_Mutation p.R222C 0.15 deleterious(0) probably_damaging(1) TCGA-CD-A487-01 22 43898608 43898608 G A MPPED1 Missense_Mutation p.R278Q 0.11 deleterious(0.03) benign(0.131) TCGA-CD-A487-01 2 166032868 166032868 T C SCN3A Missense_Mutation p.S13G 0.17 tolerated(0.06) probably_damaging(0.986) TCGA-CD-A487-01 2 168100923 168100923 A C XIRP2 Missense_Mutation p.E1007D 0.16 probably_damaging(0.999) TCGA-CD-A487-01 2 179449516 179449516 A G TTN Missense_Mutation p.S21618P 0.15 TCGA-CD-A487-01 2 179477622 179477622 T C TTN Missense_Mutation p.Q16609R 0.12 TCGA-CD-A487-01 2 179640750 179640750 A G TTN Silent p.P1947P 0.16 TCGA-CD-A487-01 2 179644026 179644026 T G TTN Missense_Mutation p.K1298T 0.20 TCGA-CD-A487-01 2 185802566 185802566 A C ZNF804A Missense_Mutation p.K815Q 0.09 deleterious(0.01) probably_damaging(0.981) TCGA-CD-A487-01 2 187364917 187364917 G T ZC3H15 Missense_Mutation p.Q62H 0.33 deleterious(0.02) possibly_damaging(0.615) TCGA-CD-A487-01 2 215013944 215013944 C T SPAG16 Silent p.I558I 0.16 TCGA-CD-A487-01 2 29404701 29404701 C T CLIP4 Missense_Mutation p.P687L 0.17 tolerated(0.14) probably_damaging(1) TCGA-CD-A487-01 2 33783389 33783389 C A RASGRP3 Missense_Mutation p.P564H 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-CD-A487-01 2 49195912 49195912 T G FSHR Missense_Mutation p.K260T 0.12 tolerated(0.44) benign(0.003) TCGA-CD-A487-01 2 86712978 86712978 T G KDM3A Silent p.A1103A 0.23 TCGA-CD-A487-01 3 130095526 130095526 G T COL6A5 Missense_Mutation p.A172S 0.15 tolerated(0.13) possibly_damaging(0.792) TCGA-CD-A487-01 3 140401645 140401645 G A TRIM42 Missense_Mutation p.R228H 0.25 deleterious(0) probably_damaging(0.999) TCGA-CD-A487-01 3 165548524 165548524 T G BCHE Missense_Mutation p.S100R 0.09 tolerated(0.25) benign(0.006) TCGA-CD-A487-01 3 187416376 187416376 G T RTP2 Missense_Mutation p.F196L 0.10 tolerated(0.35) possibly_damaging(0.695) TCGA-CD-A487-01 3 21552434 21552434 A G ZNF385D Missense_Mutation p.S120P 0.23 tolerated(0.3) benign(0) TCGA-CD-A487-01 3 44684845 44684845 G A ZNF197 Silent p.K741K 0.14 TCGA-CD-A487-01 3 46016798 46016798 A G FYCO1 Missense_Mutation p.Y110H 0.20 deleterious(0) probably_damaging(0.992) TCGA-CD-A487-01 3 52255257 52255257 G A TLR9 Silent p.F1179F 0.20 TCGA-CD-A487-01 3 74349082 74349082 T C CNTN3 Silent p.E701E 0.24 TCGA-CD-A487-01 4 123170768 123170768 A G KIAA1109 Missense_Mutation p.I1881V 0.11 benign(0) TCGA-CD-A487-01 4 188924770 188924770 C T ZFP42 Missense_Mutation p.T270M 0.20 deleterious(0) probably_damaging(0.999) TCGA-CD-A487-01 4 189022224 189022224 G T TRIML2 Missense_Mutation p.Q106K 0.32 deleterious(0.02) benign(0.111) TCGA-CD-A487-01 4 23816032 23816032 G C PPARGC1A Silent p.L358L 0.18 TCGA-CD-A487-01 4 46979472 46979472 T G GABRA4 Missense_Mutation p.K150T 0.18 deleterious(0) possibly_damaging(0.882) TCGA-CD-A487-01 4 68928220 68928220 A T TMPRSS11F Intron 0.38 TCGA-CD-A487-01 4 71115170 71115170 G A CSN3 Silent p.T181T 0.17 TCGA-CD-A487-01 4 74853743 74853743 C G PPBP Silent p.L26L 0.18 TCGA-CD-A487-01 4 83840057 83840057 G A THAP9 Missense_Mutation p.D898N 0.18 tolerated_low_confidence(0.97) benign(0) TCGA-CD-A487-01 4 98761987 98761987 T G STPG2 Silent p.R381R 0.15 TCGA-CD-A487-01 5 134190974 134190974 A - C5orf24 Frame_Shift_Del p.T129Lfs*39 0.09 TCGA-CD-A487-01 5 140481632 140481632 G T PCDHB3 Missense_Mutation p.A467S 0.15 deleterious_low_confidence(0) benign(0.277) TCGA-CD-A487-01 5 140536956 140536956 C T PCDHB17 Silent p.F460F 0.33 TCGA-CD-A487-01 5 153190744 153190744 A T GRIA1 Missense_Mutation p.S904C 0.12 tolerated_low_confidence(0.14) possibly_damaging(0.765) TCGA-CD-A487-01 5 176308331 176308331 C T HK3 Missense_Mutation p.D867N 0.15 deleterious(0) probably_damaging(1) TCGA-CD-A487-01 5 178154048 178154048 A C ZNF354A Missense_Mutation p.L38V 0.18 deleterious(0.04) benign(0.434) TCGA-CD-A487-01 5 178392722 178392722 T G ZNF454 Silent p.P439P 0.10 TCGA-CD-A487-01 5 35753812 35753812 G T SPEF2 Missense_Mutation p.W1139C 0.16 deleterious(0) probably_damaging(0.997) TCGA-CD-A487-01 5 89990008 89990008 T C GPR98 Missense_Mutation p.F2479L 0.20 possibly_damaging(0.483) TCGA-CD-A487-01 5 95759123 95759123 A C PCSK1 Missense_Mutation p.L146R 0.17 deleterious(0) probably_damaging(0.999) TCGA-CD-A487-01 6 152651961 152651961 A C SYNE1 Missense_Mutation p.L4620R 0.25 probably_damaging(0.999) TCGA-CD-A487-01 6 153078245 153078245 C G VIP Missense_Mutation p.S161C 0.33 deleterious(0.02) possibly_damaging(0.726) TCGA-CD-A487-01 6 155139625 155139625 C T SCAF8 Missense_Mutation p.R512W 0.23 deleterious(0) probably_damaging(1) TCGA-CD-A487-01 6 22569833 22569833 A T HDGFL1 Missense_Mutation p.K10M 0.09 deleterious(0) probably_damaging(0.956) TCGA-CD-A487-01 6 29323304 29323304 G A OR5V1 Silent p.S223S 0.14 TCGA-CD-A487-01 6 33663460 33663460 C T SBP1 Silent p.L5L 0.19 TCGA-CD-A487-01 6 43571749 43571749 G C POLH Splice_Site p.X295_splice 0.14 TCGA-CD-A487-01 6 70065727 70065727 G T BAI3 Missense_Mutation p.K1190N 0.08 deleterious(0) probably_damaging(0.991) TCGA-CD-A487-01 6 85448259 85448259 A G TBX18 Missense_Mutation p.L352P 0.12 deleterious(0) probably_damaging(0.995) TCGA-CD-A487-01 7 111381267 111381267 C T DOCK4 Silent p.P1632P 0.38 TCGA-CD-A487-01 7 141643744 141643744 T G CLEC5A Missense_Mutation p.S54R 0.13 tolerated(0.49) benign(0.006) TCGA-CD-A487-01 7 86415890 86415890 G A GRM3 Missense_Mutation p.R261Q 0.13 tolerated(0.18) benign(0.016) TCGA-CD-A487-01 7 86541447 86541447 A C KIAA1324L Missense_Mutation p.F704V 0.23 deleterious(0) probably_damaging(1) TCGA-CD-A487-01 7 88963199 88963199 A C ZNF804B Missense_Mutation p.K301N 0.25 tolerated(0.21) benign(0.004) TCGA-CD-A487-01 7 88963252 88963252 G A ZNF804B Missense_Mutation p.G319D 0.23 tolerated(0.11) possibly_damaging(0.601) TCGA-CD-A487-01 7 94058685 94058685 A C COL1A2 Missense_Mutation p.E1299D 0.24 unknown(0) TCGA-CD-A487-01 8 110100335 110100335 C A TRHR Silent p.V198V 0.13 TCGA-CD-A487-01 8 110451303 110451303 G C PKHD1L1 Missense_Mutation p.W1313S 0.16 tolerated(0.57) possibly_damaging(0.681) TCGA-CD-A487-01 8 116632071 116632071 T G TRPS1 Missense_Mutation p.K85T 0.23 tolerated_low_confidence(0.06) benign(0.003) TCGA-CD-A487-01 8 121222071 121222071 G T COL14A1 Silent p.V466V 0.21 TCGA-CD-A487-01 8 125072687 125072687 G A FER1L6 Intron 0.24 TCGA-CD-A487-01 8 145002133 145002133 G A PLEC Silent p.R1233R 0.20 TCGA-CD-A487-01 8 29961840 29961841 - T LEPROTL1 Frame_Shift_Ins p.Y42Lfs*17 0.29 TCGA-CD-A487-01 8 3087592 3087592 A C CSMD1 Missense_Mutation p.F1439V 0.12 possibly_damaging(0.562) TCGA-CD-A487-01 8 39792685 39792685 T C IDO2 5'UTR 0.17 TCGA-CD-A487-01 8 65509467 65509467 A C CYP7B1 Missense_Mutation p.F418C 0.15 deleterious(0) probably_damaging(1) TCGA-CD-A487-01 8 69046425 69046425 A C PREX2 Missense_Mutation p.T1300P 0.12 deleterious(0.02) benign(0.188) TCGA-CD-A487-01 8 87473501 87473501 G C WWP1 Missense_Mutation p.V850L 0.13 deleterious(0) probably_damaging(0.998) TCGA-CD-A487-01 9 79842333 79842333 G A VPS13A Missense_Mutation p.E462K 0.31 deleterious(0) probably_damaging(0.999) TCGA-CD-A487-01 9 80919766 80919766 G A PSAT1 Missense_Mutation p.V103M 0.23 tolerated(0.09) probably_damaging(0.925) TCGA-CD-A487-01 X 125685428 125685428 G A DCAF12L1 Silent p.S388S 0.27 TCGA-CD-A487-01 X 130416664 130416664 G T IGSF1 Missense_Mutation p.Q334K 0.24 tolerated(0.67) benign(0.138) TCGA-CD-A487-01 X 140953339 140953339 G C MAGEC3 Missense_Mutation p.G69A 0.31 deleterious_low_confidence(0) possibly_damaging(0.794) TCGA-CD-A487-01 X 23411256 23411256 T C PTCHD1 Missense_Mutation p.Y541H 0.22 deleterious(0) probably_damaging(0.999) TCGA-CD-A487-01 X 35971836 35971836 A G CXorf22 Missense_Mutation p.S392G 0.55 tolerated(0.06) possibly_damaging(0.797) TCGA-CD-A487-01 X 54953054 54953054 C A TRO Missense_Mutation p.P566T 0.64 deleterious(0) unknown(0) TCGA-CD-A487-01 X 63569939 63569939 G C MTMR8 Silent p.T160T 0.31 TCGA-CD-A487-01 X 72433060 72433060 T G NAP1L2 Missense_Mutation p.E423D 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.88) TCGA-CD-A487-01 X 73959940 73959940 T G KIAA2022 Missense_Mutation p.K1484N 0.36 deleterious(0) probably_damaging(0.957) TCGA-CD-A487-01 X 73962104 73962104 A C KIAA2022 Missense_Mutation p.V763G 0.26 tolerated(0.47) benign(0.001) TCGA-CD-A489-01 10 101715527 101715527 T A DNMBP Silent p.T568T 0.20 TCGA-CD-A489-01 10 17276693 17276693 T C VIM Missense_Mutation p.F295S 0.28 deleterious(0) possibly_damaging(0.849) TCGA-CD-A489-01 10 30317329 30317329 A T KIAA1462 Missense_Mutation p.V583D 0.19 deleterious(0) probably_damaging(1) TCGA-CD-A489-01 10 77159095 77159095 G A ZNF503 Silent p.C451C 0.28 TCGA-CD-A489-01 10 85991558 85991558 G T LRIT1 3'UTR 0.67 TCGA-CD-A489-01 11 1016369 1016369 A G MUC6 Silent p.Y2144Y 0.12 TCGA-CD-A489-01 11 102196232 102196232 G A BIRC3 Missense_Mutation p.G297S 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-CD-A489-01 11 102593235 102593235 C A MMP8 Missense_Mutation p.C91F 0.21 deleterious(0) probably_damaging(0.999) TCGA-CD-A489-01 11 126294762 126294762 C T KIRREL3 Missense_Mutation p.G684S 0.24 tolerated(0.12) probably_damaging(0.999) TCGA-CD-A489-01 11 18456456 18456456 T G LDHC Silent p.S196S 0.19 TCGA-CD-A489-01 11 1862404 1862404 C G TNNI2 Missense_Mutation p.N140K 0.16 deleterious(0) probably_damaging(0.964) TCGA-CD-A489-01 11 56020031 56020031 A T OR5T3 Missense_Mutation p.N119I 0.16 deleterious(0) benign(0.189) TCGA-CD-A489-01 11 60215249 60215249 A G MS4A5 3'UTR 0.25 TCGA-CD-A489-01 11 64603960 64603960 G T CDC42BPG Missense_Mutation p.P476H 0.22 tolerated(0.11) benign(0.336) TCGA-CD-A489-01 12 102069076 102069076 C T MYBPC1 Missense_Mutation p.P932L 0.36 deleterious(0.01) benign(0.019) TCGA-CD-A489-01 12 30887968 30887968 G A CAPRIN2 Missense_Mutation p.S248L 0.38 tolerated(0.18) benign(0.005) TCGA-CD-A489-01 12 47471346 47471346 G A AMIGO2 Silent p.N480N 0.28 TCGA-CD-A489-01 12 58006728 58006728 C T ARHGEF25 Missense_Mutation p.A77V 0.23 deleterious(0) benign(0.266) TCGA-CD-A489-01 13 111286992 111286992 G T CARKD Intron 0.25 TCGA-CD-A489-01 13 36776025 36776025 T C SOHLH2 Missense_Mutation p.K162R 0.28 tolerated(0.29) benign(0.003) TCGA-CD-A489-01 14 19377832 19377832 A G OR11H12 Missense_Mutation p.N80S 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-CD-A489-01 14 24788626 24788626 T C ADCY4 Missense_Mutation p.K917R 0.31 deleterious(0.01) probably_damaging(0.979) TCGA-CD-A489-01 14 32560898 32560911 TTTACCAAGAGCTT - ARHGAP5 Frame_Shift_Del p.L342* 0.23 TCGA-CD-A489-01 14 77732630 77732630 G A NGB 3'UTR 0.30 TCGA-CD-A489-01 15 72968542 72968542 G A HIGD2B Silent p.A58A 0.20 TCGA-CD-A489-01 15 90770820 90770820 G A SEMA4B Missense_Mutation p.A574T 0.24 tolerated(1) benign(0.009) TCGA-CD-A489-01 16 30732220 30732220 C G SRCAP Silent p.P1058P 0.18 TCGA-CD-A489-01 16 83251091 83251091 G T CDH13 Missense_Mutation p.A256S 0.26 tolerated(0.44) possibly_damaging(0.46) TCGA-CD-A489-01 17 27581338 27581338 A T CRYBA1 Missense_Mutation p.I207F 0.20 deleterious(0) possibly_damaging(0.537) TCGA-CD-A489-01 17 27901673 27901673 A C GIT1 3'UTR 0.20 TCGA-CD-A489-01 17 36934602 36934602 C T PIP4K2B Silent p.A226A 0.12 TCGA-CD-A489-01 17 7578394 7578394 T C TP53 Missense_Mutation p.H179R 0.28 deleterious(0) probably_damaging(1) TCGA-CD-A489-01 17 80676889 80676889 G T FN3KRP Silent p.G83G 0.27 TCGA-CD-A489-01 18 39573270 39573270 G A PIK3C3 Missense_Mutation p.E251K 0.26 tolerated(0.41) benign(0.005) TCGA-CD-A489-01 19 23937635 23937635 G A ZNF681 Silent p.A72A 0.15 TCGA-CD-A489-01 19 44236932 44236932 C T SMG9 Intron 0.08 TCGA-CD-A489-01 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.23 deleterious(0.01) benign(0.045) TCGA-CD-A489-01 1 119929380 119929380 G A HAO2 Missense_Mutation p.A233T 0.26 deleterious(0) probably_damaging(0.999) TCGA-CD-A489-01 1 151774881 151774881 C A LINGO4 Missense_Mutation p.E100D 0.20 deleterious(0) probably_damaging(0.983) TCGA-CD-A489-01 1 156563272 156563272 C G APOA1BP Missense_Mutation p.R197G 0.10 deleterious(0) possibly_damaging(0.679) TCGA-CD-A489-01 1 215342582 215342582 A C KCNK2 Silent p.I172I 0.33 TCGA-CD-A489-01 1 222716993 222716993 C T HHIPL2 Missense_Mutation p.R287H 0.22 tolerated(0.15) benign(0.04) TCGA-CD-A489-01 1 228333596 228333596 G A GUK1 Intron 0.18 TCGA-CD-A489-01 1 233136105 233136105 G C PCNXL2 Missense_Mutation p.D1758E 0.21 deleterious(0) possibly_damaging(0.721) TCGA-CD-A489-01 1 38003171 38003171 A G SNIP1 3'UTR 0.33 TCGA-CD-A489-01 1 6579534 6579534 C T NOL9 3'Flank 0.13 TCGA-CD-A489-01 20 14307252 14307252 T G FLRT3 Missense_Mutation p.I301L 0.24 tolerated(1) benign(0.001) TCGA-CD-A489-01 20 51871474 51871474 G A TSHZ2 Missense_Mutation p.D493N 0.15 tolerated(0.13) possibly_damaging(0.856) TCGA-CD-A489-01 20 56139227 56139227 C A PCK1 Missense_Mutation p.H322N 0.17 tolerated(0.2) benign(0) TCGA-CD-A489-01 20 60485616 60485616 G A CDH4 Missense_Mutation p.V443I 0.30 tolerated(1) benign(0.002) TCGA-CD-A489-01 21 19653413 19653413 C T TMPRSS15 Missense_Mutation p.R871Q 0.26 tolerated(0.21) benign(0.001) TCGA-CD-A489-01 2 125555790 125555790 C T CNTNAP5 Missense_Mutation p.S1036F 0.23 deleterious(0.01) benign(0.02) TCGA-CD-A489-01 2 170063039 170063039 G A LRP2 Silent p.S2397S 0.14 TCGA-CD-A489-01 2 178364413 178364413 T C AGPS Missense_Mutation p.V477A 0.30 deleterious(0) probably_damaging(0.912) TCGA-CD-A489-01 2 179476671 179476671 C T TTN Missense_Mutation p.E16789K 0.23 TCGA-CD-A489-01 2 190532126 190532126 G A ASNSD1 Missense_Mutation p.R423Q 0.37 deleterious(0) probably_damaging(0.999) TCGA-CD-A489-01 2 192550460 192550460 A G NABP1 Missense_Mutation p.N194S 0.28 tolerated(0.14) benign(0.056) TCGA-CD-A489-01 2 238289897 238289897 C T COL6A3 Missense_Mutation p.G520S 0.26 probably_damaging(0.972) TCGA-CD-A489-01 2 50724691 50724691 C T NRXN1 Missense_Mutation p.D927N 0.16 deleterious(0.01) possibly_damaging(0.842) TCGA-CD-A489-01 2 89117933 89117933 A T AC096579.13 RNA 0.14 TCGA-CD-A489-01 3 108276170 108276170 C T KIAA1524 Missense_Mutation p.R702K 0.28 tolerated(0.09) benign(0.007) TCGA-CD-A489-01 3 108298465 108298465 A C KIAA1524 Missense_Mutation p.F207C 0.25 deleterious(0) benign(0.079) TCGA-CD-A489-01 3 179319544 179319544 T G MRPL47 Missense_Mutation p.K93N 0.22 deleterious(0) probably_damaging(1) TCGA-CD-A489-01 3 179576923 179576923 C T PEX5L Missense_Mutation p.R250H 0.23 deleterious(0) probably_damaging(0.978) TCGA-CD-A489-01 3 184298951 184298951 T C EPHB3 Silent p.S910S 0.19 TCGA-CD-A489-01 3 38912935 38912935 C T SCN11A Splice_Site p.X1253_splice 0.24 TCGA-CD-A489-01 3 44694075 44694075 G A ZNF35 Silent p.A73A 0.24 TCGA-CD-A489-01 3 51733461 51733461 C T TEX264 Nonsense_Mutation p.Q174* 0.24 TCGA-CD-A489-01 3 52395215 52395215 A C DNAH1 Missense_Mutation p.K1574T 0.27 benign(0.261) TCGA-CD-A489-01 4 156651353 156651353 T A GUCY1A3 Missense_Mutation p.N681K 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.484) TCGA-CD-A489-01 4 88902651 88902651 A C SPP1 Missense_Mutation p.S81R 0.31 deleterious(0.01) possibly_damaging(0.899) TCGA-CD-A489-01 5 140308286 140308286 G A PCDHAC1 Silent p.A603A 0.31 TCGA-CD-A489-01 5 149602668 149602668 G A CAMK2A Silent p.D450D 0.36 TCGA-CD-A489-01 5 33643533 33643533 G A ADAMTS12 Missense_Mutation p.R508C 0.27 deleterious(0) probably_damaging(0.993) TCGA-CD-A489-01 6 111697854 111697854 T A REV3L Missense_Mutation p.E568D 0.18 tolerated(0.08) probably_damaging(0.996) TCGA-CD-A489-01 6 146351241 146351241 T G GRM1 Silent p.T196T 0.19 TCGA-CD-A489-01 6 155504368 155504368 C T TIAM2 Intron 0.20 TCGA-CD-A489-01 6 35923217 35923217 C T SLC26A8 Silent p.E648E 0.20 TCGA-CD-A489-01 6 41010893 41010893 G A TSPO2 Missense_Mutation p.V57M 0.19 tolerated(1) benign(0.01) TCGA-CD-A489-01 6 52878511 52878511 G T ICK Missense_Mutation p.D367E 0.23 tolerated(0.49) benign(0.002) TCGA-CD-A489-01 6 62604706 62604706 G A KHDRBS2 Missense_Mutation p.P215L 0.33 tolerated(0.29) benign(0) TCGA-CD-A489-01 7 149489758 149489758 C T SSPO RNA 0.12 TCGA-CD-A489-01 7 2617908 2617908 G A IQCE Silent p.L166L 0.15 TCGA-CD-A489-01 7 37298854 37298854 C T ELMO1 Silent p.T115T 0.19 TCGA-CD-A489-01 8 16021613 16021613 C T MSR1 Missense_Mutation p.E260K 0.12 deleterious(0) probably_damaging(0.983) TCGA-CD-A489-01 8 39581392 39581392 A G ADAM18 Missense_Mutation p.K715E 0.27 tolerated(0.33) benign(0.214) TCGA-CD-A489-01 8 42586889 42586889 G A CHRNB3 Missense_Mutation p.A147T 0.29 deleterious(0) probably_damaging(0.953) TCGA-CD-A489-01 8 69011999 69011999 C A PREX2 Missense_Mutation p.T879N 0.11 deleterious(0.02) benign(0.024) TCGA-CD-A489-01 9 104124855 104124855 A G BAAT Missense_Mutation p.L371P 0.19 tolerated(0.13) probably_damaging(0.98) TCGA-CD-A489-01 9 118989743 118989743 A T PAPPA Missense_Mutation p.E715D 0.18 deleterious(0.02) benign(0.217) TCGA-CD-A489-01 9 123201972 123201972 T C CDK5RAP2 Missense_Mutation p.I1143V 0.36 tolerated(0.42) benign(0.156) TCGA-CD-A489-01 9 131502299 131502299 G A ZER1 Silent p.V651V 0.11 TCGA-CD-A489-01 9 2084121 2084121 G A SMARCA2 Silent p.Q817Q 0.63 TCGA-CD-A489-01 9 21974695 21974695 G T CDKN2A Nonsense_Mutation p.Y44* 0.51 TCGA-CD-A489-01 9 33469046 33469046 C A NOL6 Missense_Mutation p.Q312H 0.38 tolerated(0.58) benign(0.008) TCGA-CD-A489-01 9 74315723 74315723 A G TMEM2 Missense_Mutation p.V1071A 0.28 deleterious(0) possibly_damaging(0.777) TCGA-CD-A489-01 X 153047060 153047060 G A SRPK3 Nonsense_Mutation p.W97* 0.41 TCGA-CD-A489-01 X 41205650 41205682 TAGTGGCTACAGCAGTATGTATAAACATCTTTC - DDX3X Splice_Site p.X495_splice 0.48 TCGA-CD-A48A-01 10 103789493 103789493 C T C10orf76 Missense_Mutation p.A106T 0.70 tolerated(0.09) benign(0.011) TCGA-CD-A48A-01 10 11505274 11505274 G A USP6NL Silent p.Y568Y 0.36 TCGA-CD-A48A-01 10 118353831 118353831 C T PNLIPRP1 Intron 0.38 TCGA-CD-A48A-01 10 17087075 17087075 G A CUBN Silent p.S1201S 0.48 TCGA-CD-A48A-01 10 18242152 18242152 C T SLC39A12 5'UTR 0.26 TCGA-CD-A48A-01 10 31138579 31138579 G C ZNF438 Missense_Mutation p.S252C 0.36 deleterious(0.02) benign(0.028) TCGA-CD-A48A-01 10 52834364 52834364 G A PRKG1 Missense_Mutation p.R5Q 0.38 tolerated(0.32) benign(0.023) TCGA-CD-A48A-01 10 54076525 54076525 A T DKK1 Missense_Mutation p.Q253H 0.38 tolerated(0.12) benign(0.332) TCGA-CD-A48A-01 10 56106146 56106146 A G PCDH15 Silent p.I191I 0.43 TCGA-CD-A48A-01 10 94816716 94816716 T G EXOC6 Silent p.T735T 0.70 TCGA-CD-A48A-01 11 104034724 104034748 GCGCCGCCCTGCGCTCTCGCCGCCT - PDGFD 5'UTR 0.69 TCGA-CD-A48A-01 11 110451103 110451103 T A ARHGAP20 Missense_Mutation p.K856M 0.41 deleterious(0.04) benign(0.073) TCGA-CD-A48A-01 11 113815433 113815433 A G HTR3B Missense_Mutation p.D349G 0.30 tolerated(0.25) benign(0.004) TCGA-CD-A48A-01 11 118343719 118343719 G A KMT2A Silent p.P615P 0.07 TCGA-CD-A48A-01 11 118828883 118828883 C T UPK2 Silent p.V165V 0.40 TCGA-CD-A48A-01 11 17190765 17190765 C A PIK3C2A Missense_Mutation p.R175I 0.26 deleterious_low_confidence(0.05) benign(0.16) TCGA-CD-A48A-01 11 30033552 30033552 C T KCNA4 Missense_Mutation p.R225H 0.23 deleterious(0.03) probably_damaging(0.996) TCGA-CD-A48A-01 11 35454060 35454060 C T PAMR1 Silent p.A686A 0.47 TCGA-CD-A48A-01 11 36595248 36595248 C T RAG1 Missense_Mutation p.P132S 0.17 deleterious_low_confidence(0.01) probably_damaging(0.979) TCGA-CD-A48A-01 11 44072941 44072941 T G ACCSL Missense_Mutation p.L231R 0.42 deleterious(0) probably_damaging(1) TCGA-CD-A48A-01 11 4661487 4661487 A G OR51D1 Missense_Mutation p.K156R 0.18 tolerated(0.25) possibly_damaging(0.597) TCGA-CD-A48A-01 11 55033158 55033158 T G TRIM48 Missense_Mutation p.I181S 0.51 tolerated(0.3) benign(0.041) TCGA-CD-A48A-01 11 5509961 5509961 A - OR52D1 Frame_Shift_Del p.N9Tfs*9 0.14 TCGA-CD-A48A-01 11 55110805 55110805 T G OR4A16 Missense_Mutation p.I43M 0.18 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-CD-A48A-01 11 55322161 55322161 T A OR4C15 Missense_Mutation p.S127T 0.46 tolerated_low_confidence(0.05) benign(0.056) TCGA-CD-A48A-01 11 58919986 58919986 C T FAM111A Missense_Mutation p.P282L 0.37 tolerated(0.21) benign(0) TCGA-CD-A48A-01 11 64003329 64003329 C T VEGFB Missense_Mutation p.R50W 0.42 deleterious(0.03) probably_damaging(0.999) TCGA-CD-A48A-01 11 65984206 65984206 A C PACS1 Missense_Mutation p.K313T 0.18 deleterious(0.01) possibly_damaging(0.656) TCGA-CD-A48A-01 11 67223083 67223083 C T CABP4 Silent p.G63G 0.64 TCGA-CD-A48A-01 11 7111100 7111100 A T RBMXL2 Missense_Mutation p.D250V 0.21 deleterious(0) possibly_damaging(0.804) TCGA-CD-A48A-01 11 8132166 8132166 G A RIC3 3'UTR 0.59 TCGA-CD-A48A-01 11 8948637 8948637 C T C11orf16 Missense_Mutation p.V137I 0.51 tolerated(0.05) possibly_damaging(0.545) TCGA-CD-A48A-01 11 99827705 99827705 C T CNTN5 Missense_Mutation p.L281F 0.31 tolerated(0.28) probably_damaging(0.913) TCGA-CD-A48A-01 12 102158483 102158483 A G GNPTAB Missense_Mutation p.S738P 0.07 tolerated(1) benign(0.006) TCGA-CD-A48A-01 12 121861308 121861308 G A RNF34 Missense_Mutation p.G351S 0.78 deleterious(0) probably_damaging(1) TCGA-CD-A48A-01 12 124409641 124409641 T G DNAH10 Silent p.G3819G 0.79 TCGA-CD-A48A-01 12 132446433 132446433 G A EP400 Silent p.L423L 0.29 TCGA-CD-A48A-01 12 31254031 31254031 A G DDX11 Silent p.E673E 0.24 TCGA-CD-A48A-01 12 41323661 41323661 G A CNTN1 Missense_Mutation p.R187Q 0.58 deleterious(0.01) probably_damaging(1) TCGA-CD-A48A-01 12 47471749 47471749 C - AMIGO2 Frame_Shift_Del p.G346Efs*5 0.10 TCGA-CD-A48A-01 12 48375752 48375752 A C COL2A1 Intron 0.38 TCGA-CD-A48A-01 12 57454643 57454643 G A TMEM194A Nonsense_Mutation p.R356* 0.56 TCGA-CD-A48A-01 12 57589508 57589508 C T LRP1 Silent p.F2835F 0.24 TCGA-CD-A48A-01 12 83359625 83359625 A G TMTC2 Intron 0.76 TCGA-CD-A48A-01 13 100637296 100637296 A T ZIC2 Missense_Mutation p.K391M 0.22 deleterious(0) probably_damaging(0.98) TCGA-CD-A48A-01 13 25281524 25281524 C A ATP12A Missense_Mutation p.P822T 0.16 deleterious(0) probably_damaging(1) TCGA-CD-A48A-01 13 25825882 25825882 G A MTMR6 Nonsense_Mutation p.R504* 0.16 TCGA-CD-A48A-01 13 27847280 27847280 C T RASL11A Silent p.P126P 0.74 TCGA-CD-A48A-01 13 36521533 36521533 T G DCLK1 Missense_Mutation p.K262T 0.15 deleterious(0) unknown(0) TCGA-CD-A48A-01 13 49281996 49281996 G A CYSLTR2 3'UTR 0.08 TCGA-CD-A48A-01 13 61985723 61985723 C A PCDH20 Missense_Mutation p.V837F 0.18 deleterious(0) probably_damaging(0.968) TCGA-CD-A48A-01 13 76408425 76408425 A G LMO7 Missense_Mutation p.K810R 0.30 tolerated(0.07) benign(0.232) TCGA-CD-A48A-01 13 88328385 88328385 G T SLITRK5 Missense_Mutation p.D248Y 0.15 deleterious(0.03) benign(0.37) TCGA-CD-A48A-01 13 96251664 96251664 A G DZIP1 Missense_Mutation p.S498P 0.19 tolerated(0.26) possibly_damaging(0.851) TCGA-CD-A48A-01 14 105518248 105518248 C G GPR132 Missense_Mutation p.V76L 0.39 deleterious(0.01) probably_damaging(0.955) TCGA-CD-A48A-01 14 105707732 105707732 T C BRF1 Silent p.P188P 0.09 TCGA-CD-A48A-01 14 23020976 23020976 G C AE000662.92 5'Flank 0.19 TCGA-CD-A48A-01 14 31852827 31852827 T C HEATR5A Missense_Mutation p.K206R 0.42 tolerated(0.25) benign(0.209) TCGA-CD-A48A-01 14 35546406 35546406 T G FAM177A1 Silent p.A130A 0.09 TCGA-CD-A48A-01 14 50576420 50576420 C T VCPKMT Silent p.S229S 0.79 TCGA-CD-A48A-01 14 51352350 51352350 T G ABHD12B Missense_Mutation p.F169V 0.40 deleterious(0) possibly_damaging(0.559) TCGA-CD-A48A-01 14 55004833 55004833 C A CGRRF1 Nonsense_Mutation p.S244* 0.12 TCGA-CD-A48A-01 14 60581727 60581727 C A PCNXL4 Missense_Mutation p.A68D 0.27 tolerated(0.06) possibly_damaging(0.714) TCGA-CD-A48A-01 14 60976191 60976191 C T SIX6 Silent p.G25G 0.19 TCGA-CD-A48A-01 14 63175038 63175038 G T KCNH5 Missense_Mutation p.L719M 0.14 tolerated(0.11) benign(0.004) TCGA-CD-A48A-01 14 63511893 63511893 G T KCNH5 Silent p.G4G 0.21 TCGA-CD-A48A-01 14 74538929 74538929 G C ALDH6A1 Missense_Mutation p.Q109E 0.14 deleterious(0.01) probably_damaging(0.994) TCGA-CD-A48A-01 14 74824717 74824717 C A VRTN Missense_Mutation p.H411N 0.84 tolerated(0.92) benign(0.118) TCGA-CD-A48A-01 15 25494368 25494368 T C SNORD115-43 RNA 0.80 TCGA-CD-A48A-01 15 35275478 35275478 T C ZNF770 Missense_Mutation p.K53R 0.72 tolerated(0.13) probably_damaging(0.998) TCGA-CD-A48A-01 15 41043711 41043711 C T RMDN3 Missense_Mutation p.R146Q 0.20 deleterious(0) probably_damaging(1) TCGA-CD-A48A-01 15 44846861 44846861 T G EIF3J Silent p.T135T 0.82 TCGA-CD-A48A-01 15 84705590 84705590 A C ADAMTSL3 Missense_Mutation p.K1607T 0.64 tolerated(0.63) benign(0.003) TCGA-CD-A48A-01 15 85383024 85383024 A T ALPK3 Missense_Mutation p.M374L 0.78 deleterious(0.03) probably_damaging(0.989) TCGA-CD-A48A-01 15 89828380 89828380 C T FANCI Silent p.C584C 0.81 TCGA-CD-A48A-01 15 91306363 91306363 G T BLM Missense_Mutation p.D684Y 0.20 deleterious(0) probably_damaging(1) TCGA-CD-A48A-01 16 15978053 15978053 T C FOPNL Missense_Mutation p.D13G 0.17 deleterious(0) probably_damaging(0.917) TCGA-CD-A48A-01 16 30409955 30409955 C T ZNF48 Nonsense_Mutation p.R462* 0.07 TCGA-CD-A48A-01 16 30732561 30732561 C T SRCAP Missense_Mutation p.P1102L 0.77 unknown(0) TCGA-CD-A48A-01 16 30778079 30778079 G A RNF40 Silent p.L437L 0.07 TCGA-CD-A48A-01 16 33020691 33020691 T G IGHV3OR16-8 Silent p.P33P 0.72 TCGA-CD-A48A-01 16 50102711 50102711 G T HEATR3 Missense_Mutation p.G111V 0.77 deleterious(0) probably_damaging(0.996) TCGA-CD-A48A-01 16 53191212 53191212 T G CHD9 Missense_Mutation p.L404R 0.96 probably_damaging(0.975) TCGA-CD-A48A-01 16 67223060 67223060 G A EXOC3L1 Missense_Mutation p.R24W 0.62 deleterious(0) probably_damaging(0.941) TCGA-CD-A48A-01 16 70977783 70977783 C T HYDIN Missense_Mutation p.E2201K 0.89 benign(0.317) TCGA-CD-A48A-01 16 81324114 81324114 A C BCMO1 Missense_Mutation p.K526Q 0.81 tolerated_low_confidence(0.46) benign(0.002) TCGA-CD-A48A-01 16 84126890 84126890 C G MBTPS1 Missense_Mutation p.G250A 0.74 deleterious(0) probably_damaging(1) TCGA-CD-A48A-01 17 10303844 10303844 C T MYH8 Missense_Mutation p.A1200T 0.73 deleterious(0.03) benign(0.114) TCGA-CD-A48A-01 17 10550594 10550594 A C MYH3 Missense_Mutation p.L268R 0.62 deleterious(0.01) probably_damaging(0.995) TCGA-CD-A48A-01 17 11711210 11711210 A G DNAH9 Missense_Mutation p.K2861R 0.72 possibly_damaging(0.572) TCGA-CD-A48A-01 17 27946705 27946705 G A CORO6 Silent p.N95N 0.33 TCGA-CD-A48A-01 17 3661134 3661134 T G ITGAE Missense_Mutation p.S296R 0.44 deleterious(0.05) benign(0.166) TCGA-CD-A48A-01 17 38634897 38634897 C T TNS4 Silent p.V638V 0.22 TCGA-CD-A48A-01 17 39521764 39521764 G A KRT33B Silent p.N210N 0.34 TCGA-CD-A48A-01 17 3992174 3992174 T G ZZEF1 Missense_Mutation p.K680T 0.29 deleterious(0) probably_damaging(0.999) TCGA-CD-A48A-01 17 47302153 47302153 G A PHOSPHO1 Missense_Mutation p.R112W 0.56 deleterious(0.01) probably_damaging(0.948) TCGA-CD-A48A-01 17 56388310 56388310 G T BZRAP1 Missense_Mutation p.L1116I 0.50 tolerated(0.1) benign(0.083) TCGA-CD-A48A-01 17 62856576 62856576 C T LRRC37A3 Missense_Mutation p.A1230T 0.37 tolerated(0.35) benign(0.01) TCGA-CD-A48A-01 17 74097341 74097341 G A EXOC7 Intron 0.05 TCGA-CD-A48A-01 17 74732590 74732590 G A MFSD11 5'UTR 0.39 TCGA-CD-A48A-01 17 7701486 7701486 G A DNAH2 Missense_Mutation p.V2748M 0.32 probably_damaging(0.975) TCGA-CD-A48A-01 17 80011241 80011241 T C GPS1 Missense_Mutation p.L82P 0.39 deleterious(0) probably_damaging(0.967) TCGA-CD-A48A-01 18 13645159 13645159 A T LDLRAD4 Missense_Mutation p.T142S 0.89 tolerated(0.53) benign(0.196) TCGA-CD-A48A-01 18 44260338 44260338 G A ST8SIA5 Silent p.D266D 0.74 TCGA-CD-A48A-01 19 2254273 2254273 C T JSRP1 Missense_Mutation p.V59M 0.87 deleterious(0) benign(0.137) TCGA-CD-A48A-01 19 33486967 33486967 T G RHPN2 Missense_Mutation p.D462A 0.16 deleterious(0) probably_damaging(0.936) TCGA-CD-A48A-01 19 34263466 34263466 G A CHST8 Missense_Mutation p.R258H 0.34 deleterious(0) probably_damaging(1) TCGA-CD-A48A-01 19 38102725 38102725 G A ZNF540 Missense_Mutation p.D182N 0.16 tolerated(0.07) benign(0) TCGA-CD-A48A-01 19 38852366 38852366 A G CATSPERG Silent p.R653R 0.50 TCGA-CD-A48A-01 19 38956792 38956792 C T RYR1 Missense_Mutation p.P978S 0.34 possibly_damaging(0.574) TCGA-CD-A48A-01 19 4171144 4171144 A C CREB3L3 Missense_Mutation p.K316T 0.68 deleterious(0) possibly_damaging(0.78) TCGA-CD-A48A-01 19 42407468 42407468 G A ARHGEF1 Missense_Mutation p.E599K 0.12 deleterious(0) probably_damaging(1) TCGA-CD-A48A-01 19 45322614 45322614 A G BCAM Silent p.P495P 0.47 TCGA-CD-A48A-01 19 50827318 50827318 A G KCNC3 Missense_Mutation p.F298L 0.62 tolerated(0.16) benign(0.062) TCGA-CD-A48A-01 19 51503867 51503867 G A KLK8 Nonsense_Mutation p.R60* 0.41 TCGA-CD-A48A-01 19 51509979 51509979 C T KLK9 Silent p.P67P 0.10 TCGA-CD-A48A-01 19 51914402 51914402 C T SIGLEC10 Missense_Mutation p.R682Q 0.24 tolerated(1) benign(0) TCGA-CD-A48A-01 19 53793336 53793336 T G BIRC8 Missense_Mutation p.T98P 0.29 tolerated(0.18) benign(0.002) TCGA-CD-A48A-01 19 56702324 56702324 G A ZSCAN5B Silent p.D207D 0.39 TCGA-CD-A48A-01 19 56953232 56953232 T G ZNF667 Silent p.R378R 0.53 TCGA-CD-A48A-01 19 58578513 58578513 A G ZNF135 Missense_Mutation p.K245E 0.34 deleterious(0) probably_damaging(0.989) TCGA-CD-A48A-01 19 58868391 58868391 G A ZNF497 Missense_Mutation p.T204M 0.57 tolerated(0.16) probably_damaging(0.931) TCGA-CD-A48A-01 19 8841411 8841411 G A OR2Z1 Silent p.S7S 0.80 TCGA-CD-A48A-01 19 9072734 9072734 C A MUC16 Missense_Mutation p.Q4904H 0.10 unknown(0) TCGA-CD-A48A-01 1 12887516 12887516 C T PRAMEF11 Nonsense_Mutation p.W114* 0.16 TCGA-CD-A48A-01 1 13669392 13669392 A G PRAMEF14 Missense_Mutation p.L313P 0.47 deleterious(0) probably_damaging(0.986) TCGA-CD-A48A-01 1 152279810 152279810 G A FLG Missense_Mutation p.R2518C 0.14 probably_damaging(0.991) TCGA-CD-A48A-01 1 158225038 158225038 T G CD1A Missense_Mutation p.F75V 0.42 deleterious(0) benign(0.247) TCGA-CD-A48A-01 1 158435857 158435857 A T OR10K1 Missense_Mutation p.H169L 0.41 deleterious(0.01) benign(0.013) TCGA-CD-A48A-01 1 158580915 158580915 A G SPTA1 3'UTR 0.27 TCGA-CD-A48A-01 1 158622345 158622345 T C SPTA1 Missense_Mutation p.E1096G 0.18 tolerated(0.2) benign(0.014) TCGA-CD-A48A-01 1 158653164 158653164 C T SPTA1 Silent p.T129T 0.12 TCGA-CD-A48A-01 1 158747232 158747232 A C OR6N2 Missense_Mutation p.V65G 0.33 deleterious(0.01) benign(0.097) TCGA-CD-A48A-01 1 180910330 180910330 A T KIAA1614 Missense_Mutation p.K1023M 0.22 deleterious(0) probably_damaging(0.969) TCGA-CD-A48A-01 1 20005790 20005790 G A HTR6 Missense_Mutation p.V418I 0.24 tolerated_low_confidence(0.07) benign(0.012) TCGA-CD-A48A-01 1 209905907 209905907 T C HSD11B1 Missense_Mutation p.L215P 0.28 deleterious(0) probably_damaging(0.923) TCGA-CD-A48A-01 1 226074671 226074671 G A LEFTY1 Missense_Mutation p.P286L 0.21 deleterious(0.03) benign(0.109) TCGA-CD-A48A-01 1 226420777 226420777 G A LIN9 Intron 0.56 TCGA-CD-A48A-01 1 23208893 23208893 G A EPHB2 Missense_Mutation p.V449M 0.41 tolerated(0.27) benign(0.01) TCGA-CD-A48A-01 1 237167572 237167572 C A MT1HL1 Missense_Mutation p.C34F 0.39 deleterious(0.01) unknown(0) TCGA-CD-A48A-01 1 247150278 247150278 A G ZNF695 Silent p.T513T 0.57 TCGA-CD-A48A-01 1 247769183 247769183 C T OR2G3 Missense_Mutation p.A99V 0.11 tolerated(1) benign(0.001) TCGA-CD-A48A-01 1 247875925 247875925 T A OR6F1 Missense_Mutation p.I45F 0.25 deleterious(0.01) probably_damaging(0.984) TCGA-CD-A48A-01 1 248085035 248085035 G T OR2T8 Missense_Mutation p.C239F 0.26 deleterious(0) probably_damaging(1) TCGA-CD-A48A-01 1 248525571 248525571 T A OR2T4 Missense_Mutation p.F230Y 0.49 deleterious(0) possibly_damaging(0.552) TCGA-CD-A48A-01 1 249107243 249107243 A C SH3BP5L Missense_Mutation p.I219S 0.29 deleterious(0) probably_damaging(0.999) TCGA-CD-A48A-01 1 27876608 27876608 G A AHDC1 Silent p.G673G 0.15 TCGA-CD-A48A-01 1 34052210 34052210 G A CSMD2 Silent p.I2317I 0.42 TCGA-CD-A48A-01 1 48764295 48764295 T G SPATA6 3'UTR 0.53 TCGA-CD-A48A-01 1 72163820 72163820 T C NEGR1 Missense_Mutation p.K180E 0.73 tolerated(0.49) benign(0.032) TCGA-CD-A48A-01 1 75072397 75072397 T G C1orf173 Missense_Mutation p.Q459H 0.43 tolerated(0.09) benign(0.234) TCGA-CD-A48A-01 1 86590871 86590871 C G COL24A1 Missense_Mutation p.R383T 0.30 tolerated(0.36) benign(0.002) TCGA-CD-A48A-01 1 949723 949723 G A ISG15 Silent p.L121L 0.29 TCGA-CD-A48A-01 20 33345129 33345129 C T NCOA6 Silent p.P474P 0.46 TCGA-CD-A48A-01 20 58411587 58411587 A C PHACTR3 Missense_Mutation p.E452D 0.44 deleterious(0) probably_damaging(0.976) TCGA-CD-A48A-01 20 61637712 61637712 G T BHLHE23 Missense_Mutation p.L123M 0.15 deleterious(0) probably_damaging(0.997) TCGA-CD-A48A-01 20 6759323 6759323 A G BMP2 Missense_Mutation p.I260V 0.12 tolerated(0.31) benign(0.001) TCGA-CD-A48A-01 21 10951264 10951264 A G TPTE Splice_Site p.X149_splice 0.09 TCGA-CD-A48A-01 21 31913943 31913943 C A KRTAP19-6 3'UTR 0.41 TCGA-CD-A48A-01 21 33043943 33043943 C T SCAF4 Silent p.E1071E 0.15 TCGA-CD-A48A-01 21 33044004 33044004 C G SCAF4 Missense_Mutation p.R1051T 0.18 unknown(0) TCGA-CD-A48A-01 21 33044064 33044064 C T SCAF4 Missense_Mutation p.R1031K 0.10 unknown(0) TCGA-CD-A48A-01 21 33044066 33044066 C T SCAF4 Silent p.R1030R 0.11 TCGA-CD-A48A-01 21 33076187 33076187 C A SCAF4 Missense_Mutation p.R71L 0.64 probably_damaging(0.999) TCGA-CD-A48A-01 21 39755334 39755334 A C ERG Silent p.T484T 0.71 TCGA-CD-A48A-01 21 45876639 45876639 C T LRRC3 Missense_Mutation p.R38W 0.10 tolerated(0.16) possibly_damaging(0.717) TCGA-CD-A48A-01 22 24086106 24086106 C T ZNF70 Missense_Mutation p.E408K 0.71 tolerated(0.51) benign(0.389) TCGA-CD-A48A-01 22 50926149 50926149 C G MIOX Missense_Mutation p.T52R 0.14 deleterious(0) probably_damaging(0.999) TCGA-CD-A48A-01 2 121554889 121554889 C T GLI2 5'UTR 0.29 TCGA-CD-A48A-01 2 125367442 125367442 C T CNTNAP5 Silent p.I606I 0.34 TCGA-CD-A48A-01 2 133540568 133540568 T G NCKAP5 Missense_Mutation p.K1272N 0.73 deleterious(0) probably_damaging(0.999) TCGA-CD-A48A-01 2 154335019 154335019 C T RPRM Missense_Mutation p.E21K 0.35 tolerated(0.06) benign(0.005) TCGA-CD-A48A-01 2 176964778 176964778 C T HOXD12 Silent p.L83L 0.20 TCGA-CD-A48A-01 2 179400781 179400781 C T TTN Missense_Mutation p.A33565T 0.39 TCGA-CD-A48A-01 2 179448559 179448559 C T TTN Missense_Mutation p.D21784N 0.57 TCGA-CD-A48A-01 2 179482725 179482725 C T TTN Missense_Mutation p.D15785N 0.16 TCGA-CD-A48A-01 2 179585215 179585215 A C TTN Missense_Mutation p.S7758R 0.38 TCGA-CD-A48A-01 2 179647007 179647007 T A TTN Missense_Mutation p.Q1104H 0.43 TCGA-CD-A48A-01 2 203839206 203839206 T A CARF Missense_Mutation p.I494N 0.48 tolerated(0.17) possibly_damaging(0.595) TCGA-CD-A48A-01 2 207171081 207171081 T C ZDBF2 Missense_Mutation p.V610A 0.15 tolerated(0.21) possibly_damaging(0.481) TCGA-CD-A48A-01 2 209027988 209027988 G A CRYGA Silent p.P64P 0.41 TCGA-CD-A48A-01 2 212251872 212251872 G T ERBB4 Missense_Mutation p.Q1063K 0.38 tolerated(0.52) benign(0.278) TCGA-CD-A48A-01 2 215812212 215812212 A G ABCA12 Silent p.S2391S 0.16 TCGA-CD-A48A-01 2 219508077 219508077 G A ZNF142 Silent p.G1054G 0.36 TCGA-CD-A48A-01 2 220101991 220101991 T C GLB1L Missense_Mutation p.R590G 0.52 tolerated(0.52) benign(0.002) TCGA-CD-A48A-01 2 29295113 29295113 T C C2orf71 Missense_Mutation p.K672R 0.73 deleterious(0.04) probably_damaging(0.94) TCGA-CD-A48A-01 2 40342635 40342635 C T SLC8A1 Missense_Mutation p.A894T 0.78 tolerated(0.47) benign(0.407) TCGA-CD-A48A-01 2 46607812 46607812 G T EPAS1 Missense_Mutation p.L667F 0.32 tolerated(0.72) benign(0.24) TCGA-CD-A48A-01 2 70315843 70315843 C T PCBP1 Missense_Mutation p.S323F 0.15 deleterious(0) possibly_damaging(0.74) TCGA-CD-A48A-01 2 99013602 99013602 A C CNGA3 Missense_Mutation p.K657Q 0.46 deleterious(0.02) benign(0.197) TCGA-CD-A48A-01 3 122274887 122274887 C A PARP9 Missense_Mutation p.R79L 0.43 deleterious(0) benign(0.006) TCGA-CD-A48A-01 3 123332881 123332882 - G MYLK 3'UTR 0.34 TCGA-CD-A48A-01 3 128292250 128292250 C A C3orf27 Missense_Mutation p.G108V 0.47 benign(0.041) TCGA-CD-A48A-01 3 139173592 139173592 A C RBP2 Missense_Mutation p.I111M 0.33 tolerated(0.09) benign(0.056) TCGA-CD-A48A-01 3 167023666 167023666 T C ZBBX Missense_Mutation p.E497G 0.29 tolerated(0.44) benign(0) TCGA-CD-A48A-01 3 184801262 184801262 G T C3orf70 Missense_Mutation p.Q96K 0.47 tolerated_low_confidence(0.08) benign(0.009) TCGA-CD-A48A-01 3 185324165 185324165 G A SENP2 Missense_Mutation p.R166H 0.20 tolerated(0.36) benign(0.259) TCGA-CD-A48A-01 3 186954284 186954284 C T MASP1 Missense_Mutation p.G459S 0.09 deleterious(0) probably_damaging(0.998) TCGA-CD-A48A-01 3 189038665 189038665 C T TPRG1 3'UTR 0.23 TCGA-CD-A48A-01 3 196129884 196129884 T G UBXN7 Missense_Mutation p.E76D 0.62 tolerated(0.46) benign(0.006) TCGA-CD-A48A-01 3 19974753 19974753 T C EFHB Missense_Mutation p.K253R 0.30 tolerated(0.18) benign(0.318) TCGA-CD-A48A-01 3 38648286 38648286 G A SCN5A Silent p.G338G 0.33 TCGA-CD-A48A-01 3 38755486 38755486 C T SCN10A Missense_Mutation p.R1256Q 0.28 deleterious(0) possibly_damaging(0.844) TCGA-CD-A48A-01 3 38888666 38888666 T G SCN11A Missense_Mutation p.K1632T 0.42 deleterious(0) possibly_damaging(0.9) TCGA-CD-A48A-01 3 46619263 46619263 G A TDGF1 5'UTR 0.38 TCGA-CD-A48A-01 3 48717103 48717103 C T NCKIPSD Missense_Mutation p.G465D 0.35 deleterious(0) probably_damaging(0.993) TCGA-CD-A48A-01 3 49760467 49760467 C T GMPPB Missense_Mutation p.D114N 0.35 tolerated(0.31) benign(0.045) TCGA-CD-A48A-01 3 55038828 55038828 A C CACNA2D3 Missense_Mutation p.N910T 0.35 tolerated(0.51) benign(0.001) TCGA-CD-A48A-01 3 89499325 89499325 A T EPHA3 Splice_Site p.X833_splice 0.38 TCGA-CD-A48A-01 3 89528682 89528682 A C EPHA3 3'UTR 0.58 TCGA-CD-A48A-01 3 97806056 97806056 T C OR5AC2 Missense_Mutation p.F14L 0.41 deleterious(0.01) benign(0.101) TCGA-CD-A48A-01 3 99513455 99513455 G T COL8A1 Missense_Mutation p.R237L 0.40 tolerated(0.11) unknown(0) TCGA-CD-A48A-01 4 134073102 134073102 G A PCDH10 Missense_Mutation p.V603M 0.88 deleterious(0) probably_damaging(0.921) TCGA-CD-A48A-01 4 155237128 155237128 T C DCHS2 Missense_Mutation p.T1223A 0.79 tolerated(0.11) possibly_damaging(0.519) TCGA-CD-A48A-01 4 155665550 155665550 C T LRAT Silent p.L24L 0.64 TCGA-CD-A48A-01 4 169013834 169013834 T G ANXA10 5'UTR 0.65 TCGA-CD-A48A-01 4 47427934 47427934 G A GABRB1 Missense_Mutation p.D442N 0.73 tolerated(0.33) benign(0.075) TCGA-CD-A48A-01 4 74703404 74703404 G A CXCL6 3'UTR 0.10 TCGA-CD-A48A-01 4 88583780 88583780 G A DMP1 Missense_Mutation p.D284N 0.26 tolerated(0.15) possibly_damaging(0.87) TCGA-CD-A48A-01 5 110712611 110712611 A C CAMK4 Missense_Mutation p.E119D 0.57 deleterious(0.02) possibly_damaging(0.88) TCGA-CD-A48A-01 5 118968544 118968544 T C FAM170A Missense_Mutation p.C58R 0.50 deleterious(0) benign(0.001) TCGA-CD-A48A-01 5 135286988 135286988 A G LECT2 Silent p.T71T 0.56 TCGA-CD-A48A-01 5 140168189 140168189 T G PCDHA1 Missense_Mutation p.F772V 0.54 deleterious_low_confidence(0.01) possibly_damaging(0.727) TCGA-CD-A48A-01 5 140573285 140573285 A G PCDHB10 Missense_Mutation p.E387G 0.06 deleterious_low_confidence(0.04) benign(0.005) TCGA-CD-A48A-01 5 140782734 140782734 C T PCDHGA9 Missense_Mutation p.T72M 0.16 tolerated_low_confidence(0.07) possibly_damaging(0.458) TCGA-CD-A48A-01 5 150946485 150946486 AT - FAT2 Frame_Shift_Del p.C670* 0.12 TCGA-CD-A48A-01 5 168195242 168195242 A C SLIT3 Intron 0.88 TCGA-CD-A48A-01 5 177309432 177309432 A C RP11-423H2.1 RNA 0.28 TCGA-CD-A48A-01 5 33938145 33938145 C A RXFP3 Missense_Mutation p.P434T 0.63 tolerated(0.26) benign(0) TCGA-CD-A48A-01 5 33951636 33951636 C T SLC45A2 Intron 0.12 TCGA-CD-A48A-01 5 5187859 5187859 G A ADAMTS16 Missense_Mutation p.G329R 0.12 tolerated(0.05) probably_damaging(0.976) TCGA-CD-A48A-01 5 54405934 54405934 G A GZMA Missense_Mutation p.R238H 0.07 deleterious(0.02) benign(0.017) TCGA-CD-A48A-01 5 55185823 55185823 G A IL31RA Missense_Mutation p.R211H 0.63 tolerated(0.17) benign(0.001) TCGA-CD-A48A-01 5 68578671 68578671 C G CCDC125 Missense_Mutation p.S474T 0.23 tolerated(0.16) benign(0.081) TCGA-CD-A48A-01 6 102307263 102307263 C A GRIK2 Silent p.I473I 0.27 TCGA-CD-A48A-01 6 127901484 127901484 C A C6orf58 Missense_Mutation p.Q155K 0.10 tolerated(0.15) benign(0.14) TCGA-CD-A48A-01 6 129381032 129381032 T A LAMA2 Missense_Mutation p.D129E 0.12 deleterious(0) probably_damaging(0.997) TCGA-CD-A48A-01 6 132618968 132618968 T C MOXD1 Silent p.P545P 0.31 TCGA-CD-A48A-01 6 136597032 136597032 C T BCLAF1 Missense_Mutation p.R544H 0.10 tolerated(0.09) possibly_damaging(0.715) TCGA-CD-A48A-01 6 13977616 13977616 T G RNF182 Missense_Mutation p.V89G 0.85 deleterious(0.02) benign(0.004) TCGA-CD-A48A-01 6 152469370 152469370 A G SYNE1 Silent p.A8262A 0.63 TCGA-CD-A48A-01 6 152671375 152671375 G A SYNE1 Silent p.G3943G 0.26 TCGA-CD-A48A-01 6 159462400 159462400 C T TAGAP Missense_Mutation p.A155T 0.21 deleterious(0) probably_damaging(0.999) TCGA-CD-A48A-01 6 26031831 26031831 G A HIST1H3B 3'UTR 0.09 TCGA-CD-A48A-01 6 26056613 26056613 G A HIST1H1C Missense_Mutation p.A15V 0.79 tolerated(0.28) possibly_damaging(0.499) TCGA-CD-A48A-01 6 26234947 26234947 T C HIST1H1D Missense_Mutation p.Y72C 0.19 deleterious(0) probably_damaging(0.999) TCGA-CD-A48A-01 6 28478608 28478608 A G GPX6 Missense_Mutation p.I54T 0.52 deleterious(0.02) probably_damaging(0.955) TCGA-CD-A48A-01 6 33036858 33036858 T C HLA-DPA1 Missense_Mutation p.E189G 0.16 tolerated(0.21) benign(0.29) TCGA-CD-A48A-01 7 100683595 100683595 T G MUC17 Missense_Mutation p.S2966R 0.55 probably_damaging(0.948) TCGA-CD-A48A-01 7 100685676 100685676 T G MUC17 Missense_Mutation p.V3660G 0.55 benign(0) TCGA-CD-A48A-01 7 103179704 103179704 T G RELN Missense_Mutation p.K2334T 0.55 tolerated(0.43) probably_damaging(0.997) TCGA-CD-A48A-01 7 111580168 111580168 T C DOCK4 Missense_Mutation p.Y325C 0.33 deleterious(0) probably_damaging(0.982) TCGA-CD-A48A-01 7 128496648 128496648 G A FLNC Missense_Mutation p.R2443Q 0.56 tolerated(0.43) benign(0.426) TCGA-CD-A48A-01 7 36588291 36588291 A G AOAH Silent p.L354L 0.25 TCGA-CD-A48A-01 7 37272780 37272780 A G ELMO1 Missense_Mutation p.F157L 0.31 tolerated(0.75) benign(0.015) TCGA-CD-A48A-01 7 6370607 6370607 G T FAM220A Missense_Mutation p.A60E 0.25 tolerated(0.22) probably_damaging(0.994) TCGA-CD-A48A-01 7 72416237 72416237 T G POM121 Silent p.V949V 0.23 TCGA-CD-A48A-01 7 73530169 73530169 G A LIMK1 Missense_Mutation p.R483H 0.32 deleterious(0.02) probably_damaging(0.99) TCGA-CD-A48A-01 7 77885499 77885499 A C MAGI2 Missense_Mutation p.L603R 0.31 deleterious(0) probably_damaging(0.926) TCGA-CD-A48A-01 7 8167572 8167572 T C ICA1 Missense_Mutation p.T421A 0.05 tolerated(0.4) benign(0.001) TCGA-CD-A48A-01 7 94539454 94539454 G A PPP1R9A Missense_Mutation p.R10Q 0.30 deleterious(0) probably_damaging(0.999) TCGA-CD-A48A-01 8 104948824 104948824 A C RIMS2 Missense_Mutation p.E807D 0.09 deleterious_low_confidence(0) probably_damaging(0.948) TCGA-CD-A48A-01 8 141407835 141407835 C G TRAPPC9 Missense_Mutation p.A438P 0.83 deleterious(0) possibly_damaging(0.905) TCGA-CD-A48A-01 8 144550422 144550422 G A ZC3H3 Missense_Mutation p.T711M 0.80 deleterious(0.01) probably_damaging(0.999) TCGA-CD-A48A-01 8 2820743 2820743 C T CSMD1 Splice_Site p.X3152_splice 0.39 TCGA-CD-A48A-01 8 38275476 38275476 G A FGFR1 Silent p.C519C 0.28 TCGA-CD-A48A-01 8 442692 442692 A C TDRP Missense_Mutation p.W89G 0.69 deleterious(0) probably_damaging(0.998) TCGA-CD-A48A-01 8 54791938 54791938 G A RGS20 Missense_Mutation p.E96K 0.48 tolerated_low_confidence(0.36) benign(0.186) TCGA-CD-A48A-01 8 71646212 71646212 C T XKR9 Silent p.F225F 0.27 TCGA-CD-A48A-01 8 72981358 72981358 T G TRPA1 Missense_Mutation p.K115T 0.48 deleterious(0.04) benign(0.152) TCGA-CD-A48A-01 8 92406580 92406580 G A SLC26A7 3'UTR 0.46 TCGA-CD-A48A-01 9 107288559 107288559 A G OR13C4 Missense_Mutation p.L311P 0.49 deleterious(0.01) probably_damaging(0.94) TCGA-CD-A48A-01 9 117826111 117826111 A C TNC Missense_Mutation p.F1242V 0.28 tolerated(0.49) benign(0.392) TCGA-CD-A48A-01 9 125239555 125239555 A G OR1J1 Silent p.S217S 0.40 TCGA-CD-A48A-01 9 130911881 130911881 A G LCN2 Missense_Mutation p.D26G 0.07 tolerated(0.36) benign(0) TCGA-CD-A48A-01 9 13126741 13126741 C T MPDZ Missense_Mutation p.E1499K 0.14 deleterious(0) probably_damaging(0.951) TCGA-CD-A48A-01 9 136028886 136028886 G A GBGT1 3'UTR 0.59 TCGA-CD-A48A-01 9 138011872 138011872 G T OLFM1 Nonsense_Mutation p.E418* 0.05 TCGA-CD-A48A-01 9 14788940 14788940 A C FREM1 Missense_Mutation p.I1385S 0.62 deleterious(0) probably_damaging(0.996) TCGA-CD-A48A-01 9 32542941 32542941 C T TOPORS Missense_Mutation p.D528N 0.10 deleterious(0.01) probably_damaging(0.91) TCGA-CD-A48A-01 9 40774112 40774112 T A ZNF658 Missense_Mutation p.K388I 0.44 deleterious(0.01) benign(0.271) TCGA-CD-A48A-01 9 5720218 5720218 T G KIAA1432 Silent p.T159T 0.95 TCGA-CD-A48A-01 9 73233962 73233962 C T TRPM3 Missense_Mutation p.D715N 0.44 tolerated(0.43) benign(0.23) TCGA-CD-A48A-01 9 91616077 91616077 T C S1PR3 5'UTR 0.41 TCGA-CD-A48A-01 9 94172104 94172104 G C NFIL3 Missense_Mutation p.L305V 0.05 tolerated(0.41) possibly_damaging(0.513) TCGA-CD-A48A-01 X 100808487 100808487 T G ARMCX1 Missense_Mutation p.F192V 0.75 tolerated(0.42) probably_damaging(0.968) TCGA-CD-A48A-01 X 110463599 110463599 A T PAK3 Missense_Mutation p.K556I 0.36 deleterious(0) probably_damaging(0.971) TCGA-CD-A48A-01 X 111020004 111020004 G A TRPC5 Missense_Mutation p.S820F 0.47 tolerated_low_confidence(0.13) benign(0) TCGA-CD-A48A-01 X 151869966 151869966 A G MAGEA6 Missense_Mutation p.E219G 0.75 deleterious(0.01) benign(0.098) TCGA-CD-A48A-01 X 16876866 16876866 G A RBBP7 Silent p.I182I 0.91 TCGA-CD-A48A-01 X 50052016 50052016 T G CCNB3 Missense_Mutation p.L283V 0.73 tolerated(0.31) benign(0.015) TCGA-CD-A48A-01 X 54263946 54263946 T G WNK3 Silent p.T1351T 0.74 TCGA-CD-A48A-01 X 68382960 68382960 C T PJA1 Missense_Mutation p.R41Q 0.47 tolerated(1) benign(0) TCGA-CD-A48A-01 X 71426113 71426113 C G ERCC6L Missense_Mutation p.S835T 0.36 tolerated(0.09) benign(0.026) TCGA-CD-A48A-01 X 73745699 73745699 A T SLC16A2 Missense_Mutation p.I381F 0.72 tolerated(0.09) possibly_damaging(0.829) TCGA-CD-A48A-01 X 8555989 8555989 C A KAL1 Missense_Mutation p.R191L 0.65 tolerated(0.15) probably_damaging(0.999) TCGA-CD-A48C-01 10 125622198 125622198 A T CPXM2 Missense_Mutation p.F149I 0.32 deleterious(0.04) probably_damaging(0.972) TCGA-CD-A48C-01 10 16932428 16932428 A G CUBN Silent p.T2899T 0.20 TCGA-CD-A48C-01 10 17127608 17127608 A C CUBN Missense_Mutation p.L700V 0.22 tolerated(0.14) benign(0.08) TCGA-CD-A48C-01 10 25755587 25755587 G A GPR158 Missense_Mutation p.R448Q 0.25 deleterious(0.03) possibly_damaging(0.883) TCGA-CD-A48C-01 10 30915179 30915179 C T LYZL2 Silent p.A97A 0.31 TCGA-CD-A48C-01 10 43610164 43610164 G A RET Missense_Mutation p.V706M 0.39 deleterious(0.01) possibly_damaging(0.527) TCGA-CD-A48C-01 10 55700715 55700715 A C PCDH15 Missense_Mutation p.L1048R 0.44 tolerated(0.49) possibly_damaging(0.889) TCGA-CD-A48C-01 10 69684937 69684937 T G HERC4 Missense_Mutation p.E957A 0.30 tolerated(0.45) benign(0.093) TCGA-CD-A48C-01 10 79777454 79777454 C T POLR3A Missense_Mutation p.R437Q 0.33 deleterious(0.01) probably_damaging(0.974) TCGA-CD-A48C-01 10 87966198 87966198 C T GRID1 Missense_Mutation p.R148H 0.43 tolerated(0.47) probably_damaging(0.998) TCGA-CD-A48C-01 11 103797824 103797824 T C PDGFD Missense_Mutation p.K268R 0.06 tolerated(0.5) benign(0.071) TCGA-CD-A48C-01 11 110450220 110450220 A C ARHGAP20 Silent p.S1150S 0.13 TCGA-CD-A48C-01 11 123810804 123810804 G T OR4D5 Missense_Mutation p.A161S 0.14 tolerated(0.68) benign(0.089) TCGA-CD-A48C-01 11 123847867 123847867 A G OR10S1 Missense_Mutation p.F178L 0.14 deleterious(0.01) probably_damaging(0.997) TCGA-CD-A48C-01 11 134118356 134118356 G T THYN1 Missense_Mutation p.S218R 0.79 tolerated(0.05) probably_damaging(0.935) TCGA-CD-A48C-01 11 134257495 134257495 A G B3GAT1 Missense_Mutation p.L20P 0.05 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CD-A48C-01 11 51515399 51515399 T A OR4C46 Missense_Mutation p.Y40N 0.06 tolerated_low_confidence(1) benign(0) TCGA-CD-A48C-01 11 55371231 55371231 T G OR4C11 Missense_Mutation p.S207R 0.64 deleterious(0) benign(0.192) TCGA-CD-A48C-01 11 5809914 5809914 A C OR52N1 Missense_Mutation p.F45V 0.49 tolerated(0.49) benign(0.044) TCGA-CD-A48C-01 11 63487876 63487876 T C RTN3 Silent p.Y634Y 0.48 TCGA-CD-A48C-01 11 68518164 68518164 G A MTL5 5'UTR 0.19 TCGA-CD-A48C-01 11 6977491 6977491 T G ZNF215 Missense_Mutation p.L428R 0.73 deleterious(0.01) possibly_damaging(0.548) TCGA-CD-A48C-01 11 73811600 73811600 A C C2CD3 Missense_Mutation p.L901R 0.80 deleterious(0) probably_damaging(1) TCGA-CD-A48C-01 11 77907439 77907439 G A USP35 Missense_Mutation p.V50M 0.15 deleterious(0.01) unknown(0) TCGA-CD-A48C-01 11 85428535 85428535 C T SYTL2 Missense_Mutation p.V874I 0.14 tolerated(1) benign(0.001) TCGA-CD-A48C-01 12 10005914 10005914 C T CLEC2B Silent p.R145R 0.28 TCGA-CD-A48C-01 12 101437374 101437374 T C ANO4 Silent p.C369C 0.43 TCGA-CD-A48C-01 12 10213760 10213760 A C CLEC9A Missense_Mutation p.Q69H 0.06 tolerated(0.11) possibly_damaging(0.838) TCGA-CD-A48C-01 12 129294499 129294499 C T SLC15A4 Missense_Mutation p.V334M 0.16 deleterious(0.02) probably_damaging(0.944) TCGA-CD-A48C-01 12 130648416 130648416 C T FZD10 Missense_Mutation p.T310M 0.35 deleterious(0) probably_damaging(0.999) TCGA-CD-A48C-01 12 2102462 2102462 T C DCP1B Missense_Mutation p.Q96R 0.48 deleterious(0) probably_damaging(0.996) TCGA-CD-A48C-01 12 21679829 21679829 A C C12orf39 Missense_Mutation p.S6R 0.34 tolerated(0.37) benign(0.008) TCGA-CD-A48C-01 12 41831777 41831777 A T PDZRN4 Intron 0.32 TCGA-CD-A48C-01 12 45567563 45567563 A C PLEKHA8P1 RNA 0.39 TCGA-CD-A48C-01 12 53876660 53876660 A G MAP3K12 Missense_Mutation p.S643P 0.17 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-CD-A48C-01 12 57037207 57037207 A C ATP5B Missense_Mutation p.L258V 0.12 deleterious_low_confidence(0.03) benign(0.315) TCGA-CD-A48C-01 12 57351064 57351064 C T RDH16 Silent p.L61L 0.47 TCGA-CD-A48C-01 12 57972098 57972098 G A KIF5A Silent p.L837L 0.15 TCGA-CD-A48C-01 12 58180066 58180066 T C TSFM Silent p.L118L 0.05 TCGA-CD-A48C-01 13 107145778 107145778 T C EFNB2 Splice_Site p.X205_splice 0.05 TCGA-CD-A48C-01 13 24243121 24243121 G T TNFRSF19 Missense_Mutation p.R377I 0.16 deleterious_low_confidence(0) possibly_damaging(0.865) TCGA-CD-A48C-01 13 38229240 38229240 A T TRPC4 Silent p.S623S 0.41 TCGA-CD-A48C-01 13 48985468 48985468 T C LPAR6 3'UTR 0.41 TCGA-CD-A48C-01 13 49039378 49039378 G A RB1 Missense_Mutation p.S788N 0.35 deleterious(0) probably_damaging(0.997) TCGA-CD-A48C-01 13 50586183 50586183 G C TRIM13 Missense_Mutation p.G39A 0.56 tolerated(0.1) probably_damaging(0.954) TCGA-CD-A48C-01 14 103447159 103447159 G A CDC42BPB Missense_Mutation p.P364L 0.57 deleterious(0) probably_damaging(0.999) TCGA-CD-A48C-01 14 105421322 105421322 T C AHNAK2 Missense_Mutation p.Q208R 0.76 possibly_damaging(0.78) TCGA-CD-A48C-01 14 20711736 20711736 T G OR11H4 Nonsense_Mutation p.Y262* 0.37 TCGA-CD-A48C-01 14 24879194 24879194 G C NYNRIN Missense_Mutation p.A732P 0.54 deleterious_low_confidence(0.04) benign(0.003) TCGA-CD-A48C-01 14 25075923 25075923 C G GZMH Missense_Mutation p.K209N 0.07 tolerated(1) benign(0.008) TCGA-CD-A48C-01 14 29237967 29237967 C A FOXG1 3'UTR 0.33 TCGA-CD-A48C-01 14 47426781 47426781 T G MDGA2 Missense_Mutation p.S629R 0.40 tolerated(1) benign(0.004) TCGA-CD-A48C-01 14 57858422 57858422 C A NAA30 Missense_Mutation p.H249Q 0.17 deleterious(0) benign(0.131) TCGA-CD-A48C-01 14 64989463 64989463 T G ZBTB1 Missense_Mutation p.V414G 0.20 tolerated(0.41) benign(0) TCGA-CD-A48C-01 14 73577559 73577559 G A RBM25 Silent p.R571R 0.37 TCGA-CD-A48C-01 14 94964633 94964633 G A SERPINA12 Silent p.S34S 0.63 TCGA-CD-A48C-01 15 25346808 25346808 A C SNORD116-27 RNA 0.78 TCGA-CD-A48C-01 15 25488841 25488841 C G SNORD115-40 RNA 0.46 TCGA-CD-A48C-01 15 25924926 25924926 A G ATP10A Silent p.S1354S 0.42 TCGA-CD-A48C-01 15 45408922 45408922 G A DUOXA2 Silent p.T183T 0.20 TCGA-CD-A48C-01 15 52902400 52902400 C T FAM214A Silent p.E237E 0.07 TCGA-CD-A48C-01 15 65688265 65688265 C G IGDCC4 Missense_Mutation p.G412R 0.31 deleterious(0.03) probably_damaging(1) TCGA-CD-A48C-01 15 78917462 78917462 A G CHRNB4 3'UTR 0.30 TCGA-CD-A48C-01 15 79750473 79750473 C T KIAA1024 Missense_Mutation p.R662W 0.22 deleterious(0.01) possibly_damaging(0.614) TCGA-CD-A48C-01 15 86791088 86791088 A G AGBL1 Missense_Mutation p.E192G 0.30 deleterious(0.01) probably_damaging(0.972) TCGA-CD-A48C-01 16 29994606 29994606 G C TAOK2 Missense_Mutation p.G405R 0.21 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-CD-A48C-01 16 304607 304607 C T ITFG3 Silent p.V65V 0.38 TCGA-CD-A48C-01 16 46727073 46727073 C T ORC6 Missense_Mutation p.A143V 0.18 tolerated(0.11) probably_damaging(0.928) TCGA-CD-A48C-01 16 46991100 46991100 T G DNAJA2 Missense_Mutation p.E360D 0.16 tolerated(0.16) benign(0.001) TCGA-CD-A48C-01 16 55862829 55862829 T G CES1 Missense_Mutation p.K37T 0.09 tolerated(0.13) benign(0.194) TCGA-CD-A48C-01 16 57507377 57507377 G A DOK4 Missense_Mutation p.S298L 0.22 deleterious_low_confidence(0.01) probably_damaging(0.953) TCGA-CD-A48C-01 16 67762463 67762463 G A RANBP10 Intron 0.22 TCGA-CD-A48C-01 16 72994020 72994020 C T ZFHX3 Missense_Mutation p.V9I 0.26 benign(0.003) TCGA-CD-A48C-01 16 89735830 89735830 G A SPATA33 Silent p.P115P 0.26 TCGA-CD-A48C-01 17 10315972 10315972 G A MYH8 Silent p.V407V 0.37 TCGA-CD-A48C-01 17 38938425 38938425 C T KRT27 Silent p.E107E 0.75 TCGA-CD-A48C-01 17 61987269 61987269 C A CSHL1 Splice_Site p.X158_splice 0.06 TCGA-CD-A48C-01 17 649624 649624 G A GEMIN4 Silent p.V553V 0.15 TCGA-CD-A48C-01 17 6499612 6499612 A C KIAA0753 Missense_Mutation p.L742V 0.26 deleterious(0.01) benign(0.201) TCGA-CD-A48C-01 17 7577124 7577124 C T TP53 Missense_Mutation p.V272M 0.72 deleterious(0) probably_damaging(0.997) TCGA-CD-A48C-01 17 76533475 76533475 C T DNAH17 Missense_Mutation p.R922H 0.42 benign(0) TCGA-CD-A48C-01 17 77922698 77922698 T A TBC1D16 Missense_Mutation p.E505V 0.19 deleterious(0) possibly_damaging(0.794) TCGA-CD-A48C-01 17 7851480 7851483 CTGA - CNTROB Frame_Shift_Del p.T740Sfs*24 0.14 TCGA-CD-A48C-01 18 14478283 14478283 G A CXADRP3 RNA 0.26 TCGA-CD-A48C-01 18 30672862 30672862 C G CCDC178 Missense_Mutation p.D751H 0.24 deleterious(0.01) possibly_damaging(0.908) TCGA-CD-A48C-01 18 5419826 5419826 A C EPB41L3 Missense_Mutation p.L464V 0.39 tolerated(0.07) possibly_damaging(0.748) TCGA-CD-A48C-01 18 61323110 61323110 G A SERPINB3 Silent p.T318T 0.17 TCGA-CD-A48C-01 18 65180418 65180418 A C DSEL Silent p.T486T 0.43 TCGA-CD-A48C-01 19 10657622 10657622 C T ATG4D Nonsense_Mutation p.Q201* 0.66 TCGA-CD-A48C-01 19 18280081 18280081 G A PIK3R2 Missense_Mutation p.G722S 0.56 tolerated(0.97) benign(0.002) TCGA-CD-A48C-01 19 30935611 30935611 G A ZNF536 Missense_Mutation p.R381H 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-CD-A48C-01 19 35616357 35616357 C T LGI4 Missense_Mutation p.G452S 0.25 deleterious(0) probably_damaging(1) TCGA-CD-A48C-01 19 43026105 43026105 C A CEACAM1 Missense_Mutation p.R225L 0.27 deleterious(0.03) benign(0.031) TCGA-CD-A48C-01 19 48660279 48660279 C T LIG1 Missense_Mutation p.R121H 0.16 deleterious(0) probably_damaging(0.999) TCGA-CD-A48C-01 19 49364712 49364712 G T PLEKHA4 Nonsense_Mutation p.Y104* 0.49 TCGA-CD-A48C-01 19 50549550 50549550 G A ZNF473 Missense_Mutation p.R617K 0.16 tolerated(1) benign(0.067) TCGA-CD-A48C-01 19 55897997 55897997 G C RPL28 Missense_Mutation p.K47N 0.04 deleterious(0.01) probably_damaging(0.996) TCGA-CD-A48C-01 19 6665138 6665138 G A TNFSF14 Silent p.P174P 0.45 TCGA-CD-A48C-01 19 7505323 7505323 G T ARHGEF18 Missense_Mutation p.G166V 0.67 tolerated(0.12) benign(0.032) TCGA-CD-A48C-01 1 11894018 11894018 G A CLCN6 Missense_Mutation p.S486N 0.51 deleterious(0) probably_damaging(0.993) TCGA-CD-A48C-01 1 12855741 12855741 G A PRAMEF1 Missense_Mutation p.G341R 0.19 tolerated(0.31) benign(0.021) TCGA-CD-A48C-01 1 147380514 147380514 G C GJA8 Missense_Mutation p.E144D 0.29 tolerated(0.06) benign(0.129) TCGA-CD-A48C-01 1 151144155 151144155 C T TMOD4 Missense_Mutation p.R191Q 0.40 tolerated(0.38) benign(0.001) TCGA-CD-A48C-01 1 152748860 152748860 C A LCE1F Missense_Mutation p.Q5K 0.13 deleterious_low_confidence(0) unknown(0) TCGA-CD-A48C-01 1 154938440 154938440 G A SHC1 Missense_Mutation p.R457W 0.25 deleterious(0.03) benign(0.071) TCGA-CD-A48C-01 1 15807638 15807638 G A CELA2B Missense_Mutation p.G59R 0.07 deleterious(0) probably_damaging(0.999) TCGA-CD-A48C-01 1 158259916 158259916 G C CD1C Splice_Site p.X21_splice 0.10 TCGA-CD-A48C-01 1 158735671 158735671 G C OR6N1 Missense_Mutation p.L268V 0.09 tolerated(0.75) benign(0.158) TCGA-CD-A48C-01 1 169519916 169519916 G A F5 Missense_Mutation p.S453L 0.06 deleterious(0) possibly_damaging(0.642) TCGA-CD-A48C-01 1 17395561 17395561 T G PADI2 Missense_Mutation p.K659T 0.37 deleterious(0) possibly_damaging(0.906) TCGA-CD-A48C-01 1 17431375 17431375 T G PADI2 Missense_Mutation p.K92Q 0.30 deleterious(0.03) probably_damaging(0.919) TCGA-CD-A48C-01 1 196309469 196309469 A C KCNT2 Splice_Site p.X595_splice 0.13 TCGA-CD-A48C-01 1 197097721 197097721 G T ASPM Silent p.G945G 0.14 TCGA-CD-A48C-01 1 201380578 201380578 G A TNNI1 Silent p.D121D 0.19 TCGA-CD-A48C-01 1 2125333 2125333 G - C1orf86 Frame_Shift_Del p.P72Rfs*87 0.09 TCGA-CD-A48C-01 1 216262389 216262389 A G USH2A Silent p.A1617A 0.13 TCGA-CD-A48C-01 1 216737618 216737618 A T ESRRG Missense_Mutation p.C281S 0.09 tolerated(0.35) probably_damaging(0.999) TCGA-CD-A48C-01 1 22838278 22838278 G T ZBTB40 Missense_Mutation p.Q704H 0.44 deleterious(0.01) unknown(0) TCGA-CD-A48C-01 1 244816612 244816612 G A DESI2 5'UTR 0.18 TCGA-CD-A48C-01 1 248004253 248004253 T C OR11L1 Missense_Mutation p.S316G 0.08 tolerated(0.38) benign(0) TCGA-CD-A48C-01 1 248128748 248128748 A T OR2AK2 Missense_Mutation p.N39Y 0.12 deleterious(0.02) probably_damaging(0.91) TCGA-CD-A48C-01 1 248309140 248309140 G T OR2M5 Nonsense_Mutation p.G231* 0.12 TCGA-CD-A48C-01 1 248570106 248570106 A T OR2T1 Missense_Mutation p.I271F 0.34 deleterious(0.02) possibly_damaging(0.464) TCGA-CD-A48C-01 1 26385077 26385077 T G TRIM63 Missense_Mutation p.K212T 0.22 tolerated(0.1) benign(0.367) TCGA-CD-A48C-01 1 45976808 45976808 G A PRDX1 3'UTR 0.34 TCGA-CD-A48C-01 1 74665404 74665404 G A FPGT-TNNI3K Missense_Mutation p.E60K 0.20 tolerated_low_confidence(0.14) benign(0) TCGA-CD-A48C-01 1 8073678 8073678 C T ERRFI1 Silent p.P327P 0.34 TCGA-CD-A48C-01 1 92852680 92852680 C T RPAP2 3'UTR 0.29 TCGA-CD-A48C-01 20 30584798 30584798 G A XKR7 Silent p.A426A 0.34 TCGA-CD-A48C-01 20 33584184 33584184 C A MYH7B Missense_Mutation p.D1035E 0.21 possibly_damaging(0.601) TCGA-CD-A48C-01 20 35521394 35521394 T C SAMHD1 Missense_Mutation p.T608A 0.38 tolerated_low_confidence(1) benign(0.001) TCGA-CD-A48C-01 20 35663900 35663900 A G RBL1 Silent p.L639L 0.10 TCGA-CD-A48C-01 20 54948571 54948571 C T AURKA Silent p.S249S 0.25 TCGA-CD-A48C-01 20 55212788 55212788 C A TFAP2C Missense_Mutation p.L358M 0.16 tolerated(0.07) benign(0.035) TCGA-CD-A48C-01 22 42390313 42390313 T A SEPT3 Nonsense_Mutation p.C295* 0.16 TCGA-CD-A48C-01 2 114369623 114369623 C T RPL23AP7 RNA 0.09 TCGA-CD-A48C-01 2 125405518 125405518 G A CNTNAP5 Missense_Mutation p.R686H 0.40 deleterious(0.05) benign(0.013) TCGA-CD-A48C-01 2 127451461 127451461 G T GYPC Missense_Mutation p.G43V 0.26 tolerated_low_confidence(0.54) benign(0.024) TCGA-CD-A48C-01 2 133539527 133539527 C T NCKAP5 Silent p.T1619T 0.42 TCGA-CD-A48C-01 2 133541938 133541938 G A NCKAP5 Silent p.L816L 0.14 TCGA-CD-A48C-01 2 136261984 136261984 G A ZRANB3 Silent p.L26L 0.26 TCGA-CD-A48C-01 2 141214085 141214085 G T LRP1B Missense_Mutation p.P3301H 0.13 possibly_damaging(0.893) TCGA-CD-A48C-01 2 141598520 141598520 T G LRP1B Missense_Mutation p.K1694T 0.23 benign(0.403) TCGA-CD-A48C-01 2 141806634 141806634 G A LRP1B Silent p.I570I 0.19 TCGA-CD-A48C-01 2 1488374 1488374 A T TPO Missense_Mutation p.T449S 0.30 tolerated(0.05) probably_damaging(0.998) TCGA-CD-A48C-01 2 149267699 149267699 G T MBD5 Missense_Mutation p.G1470W 0.16 deleterious(0) unknown(0) TCGA-CD-A48C-01 2 163055300 163055300 C T FAP Missense_Mutation p.D457N 0.19 tolerated(0.3) benign(0.001) TCGA-CD-A48C-01 2 166179886 166179886 C T SCN2A Missense_Mutation p.A631V 0.31 tolerated(0.09) benign(0.005) TCGA-CD-A48C-01 2 178481374 178481375 - A TTC30A 3'UTR 0.29 TCGA-CD-A48C-01 2 179413258 179413258 G T TTN Missense_Mutation p.S31032Y 0.30 TCGA-CD-A48C-01 2 179468710 179468710 C T TTN Missense_Mutation p.R18235H 0.40 TCGA-CD-A48C-01 2 185803671 185803671 C A ZNF804A Missense_Mutation p.A1183D 0.31 deleterious(0) benign(0.115) TCGA-CD-A48C-01 2 196699053 196699053 G T DNAH7 Missense_Mutation p.P2993T 0.15 deleterious(0) probably_damaging(1) TCGA-CD-A48C-01 2 207509343 207509343 C T AC010731.4 RNA 0.38 TCGA-CD-A48C-01 2 219509337 219509337 T G ZNF142 Silent p.S634S 0.44 TCGA-CD-A48C-01 2 220349010 220349010 C T SPEG Silent p.H2275H 0.33 TCGA-CD-A48C-01 2 225266120 225266120 C T FAM124B Silent p.Q122Q 0.35 TCGA-CD-A48C-01 2 228681080 228681081 AT - CCL20 Frame_Shift_Del p.I85Cfs*6 0.27 TCGA-CD-A48C-01 2 241534098 241534098 G C CAPN10 Missense_Mutation p.E323D 0.13 tolerated(0.14) benign(0.015) TCGA-CD-A48C-01 2 39417521 39417521 C G CDKL4 Missense_Mutation p.E193Q 0.14 deleterious(0) probably_damaging(0.996) TCGA-CD-A48C-01 2 44171034 44171034 C T LRPPRC Splice_Site p.X766_splice 0.11 TCGA-CD-A48C-01 2 50765687 50765687 C A NRXN1 Missense_Mutation p.G656V 0.54 deleterious(0) probably_damaging(0.999) TCGA-CD-A48C-01 2 73900073 73900073 C T ALMS1P RNA 0.18 TCGA-CD-A48C-01 2 95847715 95847715 A G ZNF2 Missense_Mutation p.Q381R 0.14 tolerated(0.09) possibly_damaging(0.759) TCGA-CD-A48C-01 2 98797648 98797648 G A VWA3B Silent p.P428P 0.14 TCGA-CD-A48C-01 3 100963573 100963573 A C IMPG2 Missense_Mutation p.S534R 0.58 deleterious(0.01) possibly_damaging(0.556) TCGA-CD-A48C-01 3 134967238 134967238 C A EPHB1 Missense_Mutation p.D859E 0.09 tolerated(0.06) benign(0.26) TCGA-CD-A48C-01 3 142524916 142524916 C T TRPC1 Missense_Mutation p.R741C 0.18 deleterious(0) probably_damaging(0.992) TCGA-CD-A48C-01 3 142769862 142769862 G C U2SURP Missense_Mutation p.E876Q 0.50 tolerated(0.1) possibly_damaging(0.759) TCGA-CD-A48C-01 3 14964574 14964574 C T FGD5 Missense_Mutation p.R1277W 0.50 deleterious(0) probably_damaging(0.999) TCGA-CD-A48C-01 3 151046713 151046713 T C P2RY13 Missense_Mutation p.Q44R 0.11 tolerated(0.08) benign(0.002) TCGA-CD-A48C-01 3 152018069 152018069 G A MBNL1 Silent p.R29R 0.21 TCGA-CD-A48C-01 3 165504095 165504095 G T BCHE Missense_Mutation p.P508T 0.19 deleterious(0) probably_damaging(1) TCGA-CD-A48C-01 3 168807857 168807857 T A MECOM Missense_Mutation p.E988V 0.09 tolerated(0.11) benign(0.287) TCGA-CD-A48C-01 3 168807858 168807858 C A MECOM Nonsense_Mutation p.E988* 0.09 TCGA-CD-A48C-01 3 185393611 185393611 T C IGF2BP2 Silent p.E301E 0.12 TCGA-CD-A48C-01 3 20141402 20141402 T A KAT2B Missense_Mutation p.S209T 0.57 tolerated(0.19) possibly_damaging(0.752) TCGA-CD-A48C-01 3 21462840 21462840 T A ZNF385D Missense_Mutation p.S352C 0.25 deleterious(0.04) benign(0.088) TCGA-CD-A48C-01 3 28566142 28566142 A C ZCWPW2 Missense_Mutation p.K345T 0.28 deleterious(0.05) benign(0.003) TCGA-CD-A48C-01 3 35763106 35763106 A T ARPP21 Missense_Mutation p.R301S 0.15 deleterious(0.04) possibly_damaging(0.613) TCGA-CD-A48C-01 3 42265201 42265201 A C TRAK1 Missense_Mutation p.K945T 0.28 deleterious_low_confidence(0.01) probably_damaging(0.954) TCGA-CD-A48C-01 3 52412796 52412796 G A DNAH1 Silent p.E2459E 0.56 TCGA-CD-A48C-01 3 58183574 58183574 C T DNASE1L3 Silent p.K226K 0.23 TCGA-CD-A48C-01 3 89259476 89259476 A T EPHA3 Missense_Mutation p.K207M 0.35 deleterious(0) possibly_damaging(0.77) TCGA-CD-A48C-01 3 96962916 96962916 A G EPHA6 Missense_Mutation p.K464R 0.17 tolerated(0.42) benign(0.407) TCGA-CD-A48C-01 4 113352097 113352097 C T ALPK1 Missense_Mutation p.S465L 0.23 deleterious(0) benign(0.081) TCGA-CD-A48C-01 4 114277998 114277998 C T ANK2 Missense_Mutation p.H2742Y 0.38 benign(0.003) TCGA-CD-A48C-01 4 138442387 138442387 G T PCDH18 Missense_Mutation p.N1068K 0.64 tolerated(0.79) benign(0.021) TCGA-CD-A48C-01 4 189026046 189026046 A C TRIML2 Missense_Mutation p.L27R 0.12 tolerated(0.1) benign(0.317) TCGA-CD-A48C-01 4 20493511 20493511 C A SLIT2 Silent p.T301T 0.30 TCGA-CD-A48C-01 4 22425827 22425827 T G GPR125 Missense_Mutation p.H531P 0.30 deleterious(0.04) benign(0.001) TCGA-CD-A48C-01 4 25823632 25823632 G T SEL1L3 Missense_Mutation p.L426M 0.11 tolerated(0.07) possibly_damaging(0.893) TCGA-CD-A48C-01 4 41691639 41691639 T A LIMCH1 Missense_Mutation p.I1037N 0.14 deleterious(0) probably_damaging(0.982) TCGA-CD-A48C-01 4 46053588 46053588 A C GABRG1 Silent p.S328S 0.29 TCGA-CD-A48C-01 4 5469777 5469777 C A STK32B Missense_Mutation p.F362L 0.23 deleterious(0) possibly_damaging(0.785) TCGA-CD-A48C-01 4 5617239 5617239 C T EVC2 Silent p.K913K 0.22 TCGA-CD-A48C-01 4 65275046 65275046 G A TECRL Silent p.L8L 0.57 TCGA-CD-A48C-01 4 69696547 69696547 T A UGT2B10 Missense_Mutation p.F513I 0.54 deleterious(0.01) benign(0.169) TCGA-CD-A48C-01 4 77662015 77662015 G A SHROOM3 Missense_Mutation p.E897K 0.50 tolerated(0.07) benign(0.085) TCGA-CD-A48C-01 4 96761768 96761768 A C PDHA2 Missense_Mutation p.K156T 0.17 tolerated(0.07) possibly_damaging(0.52) TCGA-CD-A48C-01 5 10377976 10377976 C T MARCH6 Missense_Mutation p.T29I 0.14 deleterious(0) probably_damaging(1) TCGA-CD-A48C-01 5 128796134 128796134 T A ADAMTS19 Missense_Mutation p.L11H 0.29 deleterious_low_confidence(0) benign(0.036) TCGA-CD-A48C-01 5 128984615 128984615 A C ADAMTS19 Missense_Mutation p.T704P 0.09 tolerated(0.72) benign(0.002) TCGA-CD-A48C-01 5 13762852 13762852 G C DNAH5 Missense_Mutation p.N3420K 0.17 possibly_damaging(0.728) TCGA-CD-A48C-01 5 140503131 140503131 G A PCDHB4 Silent p.S517S 0.40 TCGA-CD-A48C-01 5 140559571 140559571 G A PCDHB8 Silent p.P652P 0.67 TCGA-CD-A48C-01 5 140812214 140812214 C T PCDHGA12 Nonsense_Mutation p.R630* 0.77 TCGA-CD-A48C-01 5 21842417 21842417 G T CDH12 Missense_Mutation p.P223T 0.28 deleterious(0.05) benign(0.28) TCGA-CD-A48C-01 5 24498608 24498608 G A CDH10 Missense_Mutation p.R472C 0.25 deleterious(0.01) probably_damaging(0.995) TCGA-CD-A48C-01 5 35957518 35957518 A G UGT3A1 Silent p.L283L 0.44 TCGA-CD-A48C-01 5 50120793 50120793 C T PARP8 Missense_Mutation p.H638Y 0.24 tolerated(0.39) possibly_damaging(0.878) TCGA-CD-A48C-01 5 71492684 71492684 T A MAP1B Missense_Mutation p.S1168T 0.62 benign(0.017) TCGA-CD-A48C-01 5 801265 801265 G C ZDHHC11 Missense_Mutation p.T399R 0.20 tolerated_low_confidence(0.8) possibly_damaging(0.507) TCGA-CD-A48C-01 6 129963162 129963162 G A ARHGAP18 Missense_Mutation p.R39C 0.27 tolerated(0.11) benign(0.003) TCGA-CD-A48C-01 6 132271583 132271583 C A CTGF Silent p.A130A 0.04 TCGA-CD-A48C-01 6 151671390 151671390 C T AKAP12 Missense_Mutation p.R622C 0.11 deleterious(0) probably_damaging(1) TCGA-CD-A48C-01 6 163736026 163736026 C A PACRG 3'UTR 0.09 TCGA-CD-A48C-01 6 31855588 31855588 C T EHMT2 Silent p.L632L 0.11 TCGA-CD-A48C-01 6 33144777 33144777 C T COL11A2 Missense_Mutation p.G602R 0.53 probably_damaging(0.98) TCGA-CD-A48C-01 6 39869751 39869751 C T DAAM2 Nonsense_Mutation p.R1049* 0.30 TCGA-CD-A48C-01 6 46293235 46293235 A C RCAN2 Intron 0.13 TCGA-CD-A48C-01 6 62611269 62611269 T C KHDRBS2 Missense_Mutation p.N164S 0.19 tolerated(0.18) probably_damaging(0.968) TCGA-CD-A48C-01 6 70589444 70589444 A G COL19A1 5'UTR 0.25 TCGA-CD-A48C-01 6 7230602 7230602 T C RREB1 Missense_Mutation p.L757P 0.18 deleterious(0.01) possibly_damaging(0.661) TCGA-CD-A48C-01 6 72596678 72596678 G A RIMS1 5'Flank 0.65 TCGA-CD-A48C-01 6 75804892 75804892 T C COL12A1 Missense_Mutation p.S2861G 0.25 benign(0.111) TCGA-CD-A48C-01 7 101839972 101839972 G A CUX1 Silent p.P438P 0.10 TCGA-CD-A48C-01 7 102246312 102246312 C G RASA4 Missense_Mutation p.E141Q 0.23 tolerated(0.26) possibly_damaging(0.461) TCGA-CD-A48C-01 7 133984324 133984324 G A SLC35B4 Silent p.V208V 0.22 TCGA-CD-A48C-01 7 134853507 134853507 C T C7orf49 Intron 0.24 TCGA-CD-A48C-01 7 135307657 135307657 G A NUP205 Missense_Mutation p.G1488D 0.35 deleterious(0) probably_damaging(0.998) TCGA-CD-A48C-01 7 21654730 21654730 A T DNAH11 Splice_Site p.X1285_splice 0.17 TCGA-CD-A48C-01 7 2577735 2577735 A T BRAT1 Missense_Mutation p.F812I 0.31 tolerated(0.31) benign(0) TCGA-CD-A48C-01 7 43483913 43483913 G A HECW1 Missense_Mutation p.R381Q 0.11 tolerated_low_confidence(0.67) benign(0.001) TCGA-CD-A48C-01 7 57187668 57187668 C A ZNF479 Missense_Mutation p.R485I 0.15 tolerated(0.36) benign(0.005) TCGA-CD-A48C-01 7 82764559 82764559 T A PCLO Silent p.S769S 0.08 TCGA-CD-A48C-01 7 87056199 87056199 A T ABCB4 Missense_Mutation p.L644Q 0.08 tolerated(0.57) benign(0.002) TCGA-CD-A48C-01 7 87104744 87104744 C T ABCB4 Missense_Mutation p.R13H 0.08 tolerated_low_confidence(0.18) benign(0.001) TCGA-CD-A48C-01 7 98569468 98569468 C T TRRAP Missense_Mutation p.T2573M 0.11 benign(0.168) TCGA-CD-A48C-01 8 104898096 104898096 T C RIMS2 Silent p.S423S 0.20 TCGA-CD-A48C-01 8 113275955 113275955 A T CSMD3 Missense_Mutation p.C3259S 0.13 deleterious(0.01) probably_damaging(0.975) TCGA-CD-A48C-01 8 113301691 113301691 A G CSMD3 Silent p.V3017V 0.05 TCGA-CD-A48C-01 8 11643855 11643855 G A NEIL2 3'UTR 0.09 TCGA-CD-A48C-01 8 118543004 118543004 G A MED30 Missense_Mutation p.D127N 0.10 tolerated(0.11) benign(0.057) TCGA-CD-A48C-01 8 128751076 128751076 G C MYC Missense_Mutation p.D205H 0.07 deleterious(0) probably_damaging(0.999) TCGA-CD-A48C-01 8 12958130 12958130 C T DLC1 Silent p.P572P 0.04 TCGA-CD-A48C-01 8 3565996 3565996 A C CSMD1 Missense_Mutation p.L317V 0.14 possibly_damaging(0.492) TCGA-CD-A48C-01 8 57354352 57354352 A T PENK Missense_Mutation p.L95M 0.27 tolerated(0.09) benign(0.04) TCGA-CD-A48C-01 8 77767850 77767850 G A ZFHX4 Missense_Mutation p.R2898H 0.57 probably_damaging(0.993) TCGA-CD-A48C-01 8 88365898 88365898 T G CNBD1 Missense_Mutation p.L396R 0.27 deleterious(0) probably_damaging(0.999) TCGA-CD-A48C-01 8 88885090 88885090 A G DCAF4L2 Silent p.S370S 0.09 TCGA-CD-A48C-01 8 90993671 90993671 C A NBN Missense_Mutation p.Q84H 0.63 deleterious(0.05) probably_damaging(0.95) TCGA-CD-A48C-01 9 119903650 119903650 G A ASTN2 Intron 0.59 TCGA-CD-A48C-01 9 131476473 131476473 C A PKN3 Intron 0.13 TCGA-CD-A48C-01 9 135201772 135201772 T G SETX Missense_Mutation p.H1738P 0.13 deleterious(0) benign(0.112) TCGA-CD-A48C-01 9 139912649 139912649 G A ABCA2 Silent p.Y658Y 0.07 TCGA-CD-A48C-01 9 16436469 16436469 T G BNC2 Missense_Mutation p.S575R 0.23 deleterious(0) benign(0.155) TCGA-CD-A48C-01 9 32450114 32450114 C G ACO1 3'UTR 0.40 TCGA-CD-A48C-01 X 102004035 102004035 G C BHLHB9 Missense_Mutation p.A38P 0.18 tolerated(0.12) benign(0.007) TCGA-CD-A48C-01 X 106146380 106146380 T G RIPPLY1 Missense_Mutation p.E46D 0.27 deleterious(0.03) possibly_damaging(0.794) TCGA-CD-A48C-01 X 117079445 117079445 T G KLHL13 Silent p.G67G 0.25 TCGA-CD-A48C-01 X 117577561 117577561 A C WDR44 Missense_Mutation p.K808T 0.04 deleterious(0.01) possibly_damaging(0.568) TCGA-CD-A48C-01 X 120183118 120183118 A C GLUD2 Missense_Mutation p.K527T 0.20 deleterious(0.04) benign(0.053) TCGA-CD-A48C-01 X 123554379 123554379 G T TENM1 Missense_Mutation p.S1588R 0.16 deleterious(0.01) benign(0.042) TCGA-CD-A48C-01 X 12937481 12937481 G A TLR8 Missense_Mutation p.G108S 0.12 tolerated(0.77) benign(0.007) TCGA-CD-A48C-01 X 139586729 139586729 T G SOX3 Missense_Mutation p.N166T 0.49 deleterious(0) probably_damaging(0.992) TCGA-CD-A48C-01 X 148044287 148044287 A C AFF2 Missense_Mutation p.K911N 0.44 deleterious(0) probably_damaging(0.998) TCGA-CD-A48C-01 X 37587421 37587421 C T XK Silent p.C347C 0.18 TCGA-CD-A48C-01 X 54949399 54949399 T C TRO Missense_Mutation p.V145A 0.09 tolerated_low_confidence(0.27) unknown(0) TCGA-CD-A48C-01 X 57473429 57473429 C G FAAH2 Missense_Mutation p.I395M 0.56 tolerated(0.27) benign(0.043) TCGA-CD-A48C-01 X 57936570 57936570 C T ZXDA Silent p.P95P 0.17 TCGA-CD-A48C-01 X 64887661 64887661 C A MSN 5'UTR 0.20 TCGA-CD-A48C-01 X 65252408 65252408 T G VSIG4 Missense_Mutation p.K199T 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-CD-A48C-01 X 73063913 73063913 A C XIST RNA 0.26 TCGA-CD-A48C-01 X 73960013 73960013 T C KIAA2022 Missense_Mutation p.E1460G 0.55 deleterious(0) possibly_damaging(0.894) TCGA-CD-A48C-01 X 9863306 9863306 A G SHROOM2 Missense_Mutation p.Q453R 0.10 tolerated(0.21) possibly_damaging(0.641) TCGA-CD-A4MG-01 10 100481539 100481539 G A HPSE2 Silent p.S277S 0.34 TCGA-CD-A4MG-01 10 101636905 101636905 G A DNMBP 3'UTR 0.29 TCGA-CD-A4MG-01 10 102006622 102006622 T C CWF19L1 Missense_Mutation p.D260G 0.30 deleterious(0) possibly_damaging(0.566) TCGA-CD-A4MG-01 10 102509534 102509534 G A PAX2 Silent p.G25G 0.13 TCGA-CD-A4MG-01 10 102762353 102762354 - C LZTS2 Frame_Shift_Ins p.Q22Tfs*7 0.18 TCGA-CD-A4MG-01 10 103827022 103827023 - G HPS6 Frame_Shift_Ins p.G601Rfs*14 0.22 TCGA-CD-A4MG-01 10 104136818 104136818 G A GBF1 Missense_Mutation p.R1471Q 0.09 tolerated(0.63) benign(0.002) TCGA-CD-A4MG-01 10 104173924 104173924 A G PSD Silent p.P385P 0.07 TCGA-CD-A4MG-01 10 104176203 104176203 C - PSD Frame_Shift_Del p.G198Afs*19 0.17 TCGA-CD-A4MG-01 10 104416854 104416854 G A TRIM8 Missense_Mutation p.V467I 0.28 deleterious_low_confidence(0.04) benign(0.158) TCGA-CD-A4MG-01 10 112745488 112745488 A G SHOC2 Missense_Mutation p.Q269R 0.25 tolerated(0.08) probably_damaging(0.988) TCGA-CD-A4MG-01 10 113919769 113919769 C - GPAM Frame_Shift_Del p.G601Vfs*9 0.16 TCGA-CD-A4MG-01 10 115338407 115338407 G A HABP2 Missense_Mutation p.G197D 0.12 tolerated(0.53) benign(0.052) TCGA-CD-A4MG-01 10 115489357 115489357 T - CASP7 3'UTR 0.20 TCGA-CD-A4MG-01 10 117027824 117027824 A G ATRNL1 Missense_Mutation p.Y668C 0.10 tolerated(0.15) possibly_damaging(0.784) TCGA-CD-A4MG-01 10 118435944 118435944 A - HSPA12A Frame_Shift_Del p.F452Lfs*88 0.24 TCGA-CD-A4MG-01 10 119029967 119029967 A - SLC18A2 Frame_Shift_Del p.M480Wfs*26 0.23 TCGA-CD-A4MG-01 10 120801952 120801952 C T EIF3A Missense_Mutation p.G1027E 0.26 deleterious(0.01) probably_damaging(0.975) TCGA-CD-A4MG-01 10 121338250 121338250 T - TIAL1 Frame_Shift_Del p.S199Vfs*10 0.08 TCGA-CD-A4MG-01 10 121586929 121586929 G A INPP5F Silent p.S1012S 0.08 TCGA-CD-A4MG-01 10 12238292 12238292 G A CDC123 Silent p.P16P 0.22 TCGA-CD-A4MG-01 10 124402674 124402674 G A DMBT1 Silent p.S2334S 0.24 TCGA-CD-A4MG-01 10 124803957 124803957 G A ACADSB Missense_Mutation p.A286T 0.30 deleterious(0.01) probably_damaging(1) TCGA-CD-A4MG-01 10 126086457 126086457 G T OAT 3'UTR 0.18 TCGA-CD-A4MG-01 10 126683154 126683154 C A CTBP2 Missense_Mutation p.G762C 0.18 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 10 127459133 127459133 G A MMP21 Missense_Mutation p.A336V 0.27 tolerated(1) benign(0.008) TCGA-CD-A4MG-01 10 128952172 128952172 C T FAM196A Silent p.T400T 0.08 TCGA-CD-A4MG-01 10 128973723 128973723 A G FAM196A Missense_Mutation p.C313R 0.32 deleterious(0.03) benign(0.046) TCGA-CD-A4MG-01 10 134147114 134147114 C T LRRC27 Missense_Mutation p.A29V 0.33 deleterious(0.02) benign(0) TCGA-CD-A4MG-01 10 134166503 134166503 G A LRRC27 Intron 0.32 TCGA-CD-A4MG-01 10 134218819 134218819 G A PWWP2B Missense_Mutation p.R272H 0.49 deleterious(0) probably_damaging(0.992) TCGA-CD-A4MG-01 10 134752108 134752108 C T TTC40 Missense_Mutation p.R174H 0.27 deleterious(0.03) benign(0.047) TCGA-CD-A4MG-01 10 14991060 14991060 T C DCLRE1C Missense_Mutation p.T46A 0.32 tolerated(1) benign(0.002) TCGA-CD-A4MG-01 10 15255509 15255509 A G FAM171A1 Missense_Mutation p.L693P 0.11 deleterious(0) probably_damaging(0.995) TCGA-CD-A4MG-01 10 15760810 15760810 C T ITGA8 Missense_Mutation p.A100T 0.24 tolerated(0.12) benign(0.251) TCGA-CD-A4MG-01 10 16553326 16553326 G A PTER 3'UTR 0.26 TCGA-CD-A4MG-01 10 17145208 17145208 A G CUBN Silent p.N482N 0.26 TCGA-CD-A4MG-01 10 17165610 17165610 A - CUBN Frame_Shift_Del p.C156Vfs*27 0.32 TCGA-CD-A4MG-01 10 17646017 17646017 C T PTPLA Missense_Mutation p.R96H 0.30 tolerated(0.06) probably_damaging(0.95) TCGA-CD-A4MG-01 10 18828153 18828153 T C CACNB2 Intron 0.30 TCGA-CD-A4MG-01 10 22021892 22021893 - A MLLT10 Frame_Shift_Ins p.N763Kfs*28 0.17 TCGA-CD-A4MG-01 10 24832165 24832165 C T KIAA1217 Silent p.H1322H 0.26 TCGA-CD-A4MG-01 10 27459506 27459507 TG - MASTL Frame_Shift_Del p.C540* 0.19 TCGA-CD-A4MG-01 10 30629179 30629179 A - MTPAP Frame_Shift_Del p.F177Lfs*10 0.24 TCGA-CD-A4MG-01 10 30653757 30653757 C T AL161651.1 3'Flank 0.54 TCGA-CD-A4MG-01 10 31799797 31799797 A C ZEB1 Missense_Mutation p.R227S 0.24 deleterious(0.02) benign(0.437) TCGA-CD-A4MG-01 10 32575927 32575927 G A EPC1 Missense_Mutation p.S390L 0.28 deleterious(0) probably_damaging(0.996) TCGA-CD-A4MG-01 10 33018339 33018339 C T C10ORF68 Silent p.S260S 0.21 TCGA-CD-A4MG-01 10 33209310 33209310 G T ITGB1 Missense_Mutation p.L378I 0.32 deleterious(0) probably_damaging(0.982) TCGA-CD-A4MG-01 10 35500543 35500543 A - CREM Intron 0.16 TCGA-CD-A4MG-01 10 35929958 35929958 G A FZD8 Missense_Mutation p.R134C 0.23 deleterious(0.01) unknown(0) TCGA-CD-A4MG-01 10 37421250 37421250 C T ANKRD30A Missense_Mutation p.A142V 0.35 tolerated(1) probably_damaging(0.923) TCGA-CD-A4MG-01 10 43622119 43622119 G A RET Missense_Mutation p.A1046T 0.24 tolerated_low_confidence(0.13) benign(0.007) TCGA-CD-A4MG-01 10 43678815 43678815 G A CSGALNACT2 Nonsense_Mutation p.W485* 0.23 TCGA-CD-A4MG-01 10 43882324 43882324 T C HNRNPF Missense_Mutation p.T337A 0.08 deleterious(0.03) benign(0.388) TCGA-CD-A4MG-01 10 45430173 45430173 C A TMEM72 Missense_Mutation p.P140H 0.29 deleterious(0.02) possibly_damaging(0.698) TCGA-CD-A4MG-01 10 45938973 45938973 C T ALOX5 Missense_Mutation p.R521C 0.17 tolerated(0.24) benign(0.009) TCGA-CD-A4MG-01 10 48438588 48438588 G A GDF10 Silent p.S41S 0.31 TCGA-CD-A4MG-01 10 50678283 50678286 CTCA - ERCC6 Frame_Shift_Del p.S1240Rfs*26 0.27 TCGA-CD-A4MG-01 10 50678849 50678849 G A ERCC6 Missense_Mutation p.R1053C 0.09 tolerated(0.23) benign(0) TCGA-CD-A4MG-01 10 50819414 50819414 C T SLC18A3 Missense_Mutation p.R210C 0.36 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 10 50820412 50820412 C T SLC18A3 3'UTR 0.16 TCGA-CD-A4MG-01 10 5204879 5204879 C A AKR1CL1 Missense_Mutation p.Q66H 0.27 deleterious(0.03) possibly_damaging(0.501) TCGA-CD-A4MG-01 10 5498990 5498990 C T NET1 3'UTR 0.29 TCGA-CD-A4MG-01 10 6157236 6157236 T C RBM17 Missense_Mutation p.I355T 0.18 tolerated(0.08) benign(0.411) TCGA-CD-A4MG-01 10 64927802 64927802 C T JMJD1C 3'UTR 0.13 TCGA-CD-A4MG-01 10 69672701 69672701 A - SIRT1 Frame_Shift_Del p.N611Mfs*10 0.08 TCGA-CD-A4MG-01 10 70243270 70243270 A G SLC25A16 Silent p.L306L 0.09 TCGA-CD-A4MG-01 10 70646144 70646144 T A STOX1 Missense_Mutation p.S864R 0.29 deleterious(0.02) benign(0.205) TCGA-CD-A4MG-01 10 70679634 70679634 G T DDX50 Missense_Mutation p.G379V 0.23 deleterious(0) benign(0.358) TCGA-CD-A4MG-01 10 71128331 71128331 G A HK1 Missense_Mutation p.G183R 0.12 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MG-01 10 71266751 71266751 G A TSPAN15 3'UTR 0.25 TCGA-CD-A4MG-01 10 71678073 71678073 G T COL13A1 Missense_Mutation p.K343N 0.17 deleterious(0.03) probably_damaging(0.912) TCGA-CD-A4MG-01 10 71849835 71849835 C T H2AFY2 Silent p.A64A 0.26 TCGA-CD-A4MG-01 10 72195498 72195498 G T AC022532.1 Missense_Mutation p.G149C 0.22 probably_damaging(0.985) TCGA-CD-A4MG-01 10 73376970 73376970 G A CDH23 Silent p.E318E 0.11 TCGA-CD-A4MG-01 10 73538028 73538028 G T C10orf54 5'Flank 0.13 TCGA-CD-A4MG-01 10 7409719 7409719 C T SFMBT2 Missense_Mutation p.G110S 0.25 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 10 74695441 74695441 G A PLA2G12B Silent p.C174C 0.30 TCGA-CD-A4MG-01 10 75535568 75535568 A G FUT11 3'UTR 0.33 TCGA-CD-A4MG-01 10 75550769 75550769 G A ZSWIM8 Silent p.P326P 0.33 TCGA-CD-A4MG-01 10 75863688 75863688 T C VCL Splice_Site p.X711_splice 0.08 TCGA-CD-A4MG-01 10 76788772 76788772 C T KAT6B Missense_Mutation p.T1397M 0.13 benign(0) TCGA-CD-A4MG-01 10 79745049 79745049 T C POLR3A Missense_Mutation p.I1041V 0.26 deleterious(0) probably_damaging(0.951) TCGA-CD-A4MG-01 10 88259565 88259565 T - WAPAL Frame_Shift_Del p.R479Efs*46 0.24 TCGA-CD-A4MG-01 10 88683138 88683138 G A BMPR1A Missense_Mutation p.V450M 0.31 tolerated(0.08) possibly_damaging(0.485) TCGA-CD-A4MG-01 10 88703700 88703700 C T MMRN2 Missense_Mutation p.V281M 0.24 deleterious(0.01) benign(0.383) TCGA-CD-A4MG-01 10 890939 890939 T - LARP4B Frame_Shift_Del p.T163Hfs*47 0.25 TCGA-CD-A4MG-01 10 90988087 90988087 C T LIPA Missense_Mutation p.A100T 0.30 deleterious(0) benign(0.097) TCGA-CD-A4MG-01 10 91371754 91371754 T C PANK1 Missense_Mutation p.Y252C 0.08 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 10 91405007 91405007 G A PANK1 Missense_Mutation p.A18V 0.26 deleterious_low_confidence(0) benign(0.001) TCGA-CD-A4MG-01 10 92675364 92675364 A G ANKRD1 Missense_Mutation p.L262P 0.27 tolerated(0.09) probably_damaging(0.956) TCGA-CD-A4MG-01 10 94274751 94274751 A G IDE Missense_Mutation p.V237A 0.21 deleterious(0.01) possibly_damaging(0.738) TCGA-CD-A4MG-01 10 95790874 95790874 C T PLCE1 Missense_Mutation p.S24L 0.21 tolerated_low_confidence(0.09) benign(0.001) TCGA-CD-A4MG-01 10 96352264 96352264 A - HELLS Frame_Shift_Del p.N657Tfs*15 0.21 TCGA-CD-A4MG-01 10 99341172 99341172 G A ANKRD2 Splice_Site p.X245_splice 0.28 TCGA-CD-A4MG-01 11 101937275 101937275 T - C11orf70 Frame_Shift_Del p.H112Ifs*19 0.17 TCGA-CD-A4MG-01 11 1027176 1027176 C T MUC6 Missense_Mutation p.R750Q 0.29 unknown(0) TCGA-CD-A4MG-01 11 1027310 1027319 AACTTGTAAC - MUC6 Frame_Shift_Del p.G727Afs*22 0.26 TCGA-CD-A4MG-01 11 103907643 103907643 G T DDI1 Missense_Mutation p.K31N 0.06 deleterious(0.01) possibly_damaging(0.878) TCGA-CD-A4MG-01 11 103908618 103908618 G A DDI1 Silent p.T356T 0.14 TCGA-CD-A4MG-01 11 104825595 104825595 A G CASP4 Silent p.D47D 0.24 TCGA-CD-A4MG-01 11 10527420 10527420 T - AMPD3 Frame_Shift_Del p.L774* 0.09 TCGA-CD-A4MG-01 11 105880389 105880389 C T MSANTD4 Missense_Mutation p.R304H 0.14 tolerated(0.08) benign(0.006) TCGA-CD-A4MG-01 11 110494938 110494938 T C ARHGAP20 Missense_Mutation p.M151V 0.24 tolerated(0.28) benign(0) TCGA-CD-A4MG-01 11 110582930 110582930 C T ARHGAP20 Missense_Mutation p.E9K 0.40 tolerated(0.06) benign(0.257) TCGA-CD-A4MG-01 11 113078026 113078026 C T NCAM1 Silent p.T283T 0.22 TCGA-CD-A4MG-01 11 113215128 113215128 C T TTC12 Missense_Mutation p.R374W 0.24 deleterious(0.01) benign(0.133) TCGA-CD-A4MG-01 11 113286217 113286217 G A DRD2 Missense_Mutation p.R217C 0.08 deleterious(0) probably_damaging(0.988) TCGA-CD-A4MG-01 11 113670121 113670121 G A USP28 Silent p.C1025C 0.09 TCGA-CD-A4MG-01 11 113674571 113674571 C T USP28 Missense_Mutation p.R896Q 0.12 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MG-01 11 11470434 11470434 G T GALNT18 Silent p.S95S 0.16 TCGA-CD-A4MG-01 11 116707013 116707013 G A APOA1 Silent p.G105G 0.21 TCGA-CD-A4MG-01 11 116717120 116717120 C A SIK3 Missense_Mutation p.G1262C 0.27 deleterious_low_confidence(0) probably_damaging(1) TCGA-CD-A4MG-01 11 117265851 117265851 C T CEP164 Missense_Mutation p.R953W 0.32 deleterious(0.04) benign(0.07) TCGA-CD-A4MG-01 11 117985944 117985944 C T TMPRSS4 Silent p.T367T 0.12 TCGA-CD-A4MG-01 11 118391565 118391565 A - KMT2A Frame_Shift_Del p.K3828Rfs*31 0.19 TCGA-CD-A4MG-01 11 118403685 118403685 G T TMEM25 Missense_Mutation p.G146C 0.25 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 11 118972338 118972338 G A DPAGT1 Missense_Mutation p.P10S 0.26 tolerated(0.07) possibly_damaging(0.835) TCGA-CD-A4MG-01 11 119206877 119206877 C T RNF26 Missense_Mutation p.P349S 0.35 tolerated(0.32) benign(0.004) TCGA-CD-A4MG-01 11 119213688 119213688 G - MFRP Frame_Shift_Del p.H384Tfs*94 0.29 TCGA-CD-A4MG-01 11 119216272 119216273 - G MFRP Frame_Shift_Ins p.N167Qfs*34 0.26 TCGA-CD-A4MG-01 11 119230923 119230923 G A USP2 Silent p.L266L 0.26 TCGA-CD-A4MG-01 11 120331450 120331450 A T ARHGEF12 Missense_Mutation p.E866V 0.10 deleterious(0) probably_damaging(0.971) TCGA-CD-A4MG-01 11 120351055 120351055 C T ARHGEF12 Missense_Mutation p.R1385C 0.19 deleterious_low_confidence(0.04) benign(0.005) TCGA-CD-A4MG-01 11 121424682 121424682 C A SORL1 Missense_Mutation p.S768Y 0.23 tolerated(0.05) probably_damaging(0.982) TCGA-CD-A4MG-01 11 124180508 124180508 C T OR8D1 Missense_Mutation p.S52N 0.30 tolerated(0.78) benign(0.013) TCGA-CD-A4MG-01 11 124189658 124189658 C T OR8D2 Missense_Mutation p.A146T 0.25 tolerated(0.48) benign(0.007) TCGA-CD-A4MG-01 11 124742974 124742974 G A ROBO3 Missense_Mutation p.A509T 0.29 tolerated(1) benign(0.021) TCGA-CD-A4MG-01 11 124748530 124748530 C T ROBO3 Missense_Mutation p.T1124M 0.26 tolerated(1) benign(0.219) TCGA-CD-A4MG-01 11 125300002 125300002 A T PKNOX2 Missense_Mutation p.Q386L 0.21 deleterious_low_confidence(0) benign(0.077) TCGA-CD-A4MG-01 11 1264182 1264182 C T MUC5B Silent p.T2024T 0.06 TCGA-CD-A4MG-01 11 1264202 1264202 G T MUC5B Missense_Mutation p.G2031V 0.32 unknown(0) TCGA-CD-A4MG-01 11 128333507 128333507 T C ETS1 Missense_Mutation p.Q380R 0.41 deleterious(0.03) possibly_damaging(0.845) TCGA-CD-A4MG-01 11 128350152 128350152 G A ETS1 Missense_Mutation p.R353W 0.28 deleterious(0.01) probably_damaging(0.99) TCGA-CD-A4MG-01 11 133790638 133790638 G A IGSF9B Silent p.S994S 0.20 TCGA-CD-A4MG-01 11 133806042 133806042 A G IGSF9B Missense_Mutation p.S243P 0.32 deleterious(0) probably_damaging(0.998) TCGA-CD-A4MG-01 11 134048793 134048793 C T NCAPD3 Silent p.L866L 0.18 TCGA-CD-A4MG-01 11 134062672 134062672 G A NCAPD3 Missense_Mutation p.H653Y 0.20 tolerated(0.76) possibly_damaging(0.61) TCGA-CD-A4MG-01 11 134253714 134253714 G T B3GAT1 Missense_Mutation p.P161T 0.15 tolerated(1) benign(0.16) TCGA-CD-A4MG-01 11 134253811 134253811 C T B3GAT1 Silent p.P128P 0.23 TCGA-CD-A4MG-01 11 14882859 14882859 C T PDE3B Nonsense_Mutation p.R945* 0.24 TCGA-CD-A4MG-01 11 1618965 1618965 G A KRTAP5-2 Silent p.C172C 0.22 TCGA-CD-A4MG-01 11 1629648 1629648 G T KRTAP5-3 5'UTR 0.27 TCGA-CD-A4MG-01 11 17099016 17099016 A G RPS13 Missense_Mutation p.L11P 0.21 deleterious(0.04) probably_damaging(0.949) TCGA-CD-A4MG-01 11 17496449 17496449 C A ABCC8 Missense_Mutation p.G92C 0.17 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 11 17531183 17531183 G A USH1C Missense_Mutation p.A578V 0.59 tolerated_low_confidence(0.17) possibly_damaging(0.492) TCGA-CD-A4MG-01 11 17758047 17758047 C T KCNC1 Silent p.G166G 0.31 TCGA-CD-A4MG-01 11 1780830 1780830 G - CTSD Frame_Shift_Del p.Q90Sfs*43 0.09 TCGA-CD-A4MG-01 11 18316699 18316699 C T HPS5 Missense_Mutation p.R551H 0.32 deleterious(0.01) probably_damaging(0.989) TCGA-CD-A4MG-01 11 18638501 18638501 T - SPTY2D1 Frame_Shift_Del p.D33Tfs*23 0.20 TCGA-CD-A4MG-01 11 18754906 18754907 - C PTPN5 Frame_Shift_Ins p.E365Gfs*59 0.09 TCGA-CD-A4MG-01 11 19197541 19197541 T - ZDHHC13 3'UTR 0.26 TCGA-CD-A4MG-01 11 19251226 19251226 T - E2F8 Frame_Shift_Del p.D557Tfs*67 0.09 TCGA-CD-A4MG-01 11 19735499 19735499 C T NAV2 Silent p.F86F 0.30 TCGA-CD-A4MG-01 11 20112544 20112544 G T NAV2 Nonsense_Mutation p.E1937* 0.10 TCGA-CD-A4MG-01 11 20940856 20940856 G A NELL1 Silent p.E245E 0.19 TCGA-CD-A4MG-01 11 27148884 27148884 C T BBOX1 Missense_Mutation p.R350C 0.44 deleterious(0.04) possibly_damaging(0.491) TCGA-CD-A4MG-01 11 28058201 28058201 T C KIF18A Silent p.S653S 0.19 TCGA-CD-A4MG-01 11 2997297 2997297 G A NAP1L4 Nonsense_Mutation p.R44* 0.25 TCGA-CD-A4MG-01 11 30033563 30033563 A - KCNA4 Frame_Shift_Del p.F221Lfs*21 0.25 TCGA-CD-A4MG-01 11 31653829 31653829 T C ELP4 Silent p.D268D 0.11 TCGA-CD-A4MG-01 11 32421518 32421518 C T WT1 Silent p.T358T 0.19 TCGA-CD-A4MG-01 11 32637520 32637520 T - CCDC73 Frame_Shift_Del p.E448Kfs*5 0.32 TCGA-CD-A4MG-01 11 3380735 3380735 G A ZNF195 Silent p.N501N 0.27 TCGA-CD-A4MG-01 11 33881009 33881009 C T LMO2 Missense_Mutation p.A193T 0.24 tolerated(0.42) benign(0.004) TCGA-CD-A4MG-01 11 34378361 34378361 G A ABTB2 Missense_Mutation p.A257V 0.37 tolerated(0.31) benign(0.001) TCGA-CD-A4MG-01 11 36119923 36119923 C T LDLRAD3 Silent p.N122N 0.25 TCGA-CD-A4MG-01 11 3723954 3723954 G A NUP98 Missense_Mutation p.A1084V 0.37 tolerated(0.49) benign(0.008) TCGA-CD-A4MG-01 11 400071 400071 G - PKP3 Frame_Shift_Del p.G461Vfs*186 0.17 TCGA-CD-A4MG-01 11 428583 428583 G A ANO9 Silent p.S359S 0.24 TCGA-CD-A4MG-01 11 44069803 44069803 C T ACCSL Missense_Mutation p.R73C 0.23 tolerated(0.19) benign(0.232) TCGA-CD-A4MG-01 11 44074959 44074959 A - ACCSL Frame_Shift_Del p.K319Rfs*7 0.21 TCGA-CD-A4MG-01 11 44296994 44296994 C A ALX4 Missense_Mutation p.E227D 0.23 deleterious(0.02) probably_damaging(0.983) TCGA-CD-A4MG-01 11 45204467 45204467 G A PRDM11 Silent p.P93P 0.12 TCGA-CD-A4MG-01 11 4621678 4621678 T C TRIM68 Missense_Mutation p.Y429C 0.28 deleterious(0) possibly_damaging(0.828) TCGA-CD-A4MG-01 11 46419037 46419038 - C AMBRA1 Frame_Shift_Ins p.D1197Gfs*6 0.19 TCGA-CD-A4MG-01 11 46563764 46563764 C A AMBRA1 Missense_Mutation p.Q511H 0.20 tolerated_low_confidence(0.09) benign(0.002) TCGA-CD-A4MG-01 11 46717590 46717590 A G ARHGAP1 Missense_Mutation p.L23P 0.23 deleterious(0) probably_damaging(0.976) TCGA-CD-A4MG-01 11 47289880 47289880 G A NR1H3 Missense_Mutation p.A391T 0.28 tolerated(0.17) benign(0.361) TCGA-CD-A4MG-01 11 47345868 47345868 G A MADD Missense_Mutation p.R1532Q 0.10 deleterious(0) probably_damaging(0.997) TCGA-CD-A4MG-01 11 47599055 47599055 G T KBTBD4 Missense_Mutation p.A182D 0.07 deleterious(0.02) probably_damaging(0.992) TCGA-CD-A4MG-01 11 47800563 47800563 T C NUP160 3'UTR 0.33 TCGA-CD-A4MG-01 11 4790421 4790421 A G OR51F1 Missense_Mutation p.C243R 0.11 deleterious(0) probably_damaging(0.996) TCGA-CD-A4MG-01 11 48146561 48146561 G A PTPRJ Missense_Mutation p.A306T 0.09 tolerated(0.45) benign(0.001) TCGA-CD-A4MG-01 11 48149417 48149417 G A PTPRJ Silent p.S393S 0.29 TCGA-CD-A4MG-01 11 4870217 4870217 A G OR51S1 Silent p.L74L 0.14 TCGA-CD-A4MG-01 11 4936509 4936509 C T OR51G2 Missense_Mutation p.V129M 0.26 deleterious(0.02) benign(0.285) TCGA-CD-A4MG-01 11 5274423 5274423 G T HBG2 3'UTR 0.29 TCGA-CD-A4MG-01 11 5529133 5529133 C T UBQLN3 Silent p.T552T 0.20 TCGA-CD-A4MG-01 11 55419151 55419151 C T OR4S2 Missense_Mutation p.R258C 0.50 deleterious(0.02) benign(0.04) TCGA-CD-A4MG-01 11 55653110 55653110 G T TRIM51 Missense_Mutation p.C69F 0.20 tolerated(0.71) benign(0.048) TCGA-CD-A4MG-01 11 56380328 56380328 G T OR5M1 Silent p.S217S 0.09 TCGA-CD-A4MG-01 11 56510933 56510933 A - OR9G4 Frame_Shift_Del p.S119Pfs*4 0.23 TCGA-CD-A4MG-01 11 57069612 57069612 A G TNKS1BP1 Silent p.P1590P 0.30 TCGA-CD-A4MG-01 11 57076427 57076428 CT - TNKS1BP1 Frame_Shift_Del p.S1253Wfs*6 0.19 TCGA-CD-A4MG-01 11 57099955 57099955 G A SSRP1 Silent p.S258S 0.10 TCGA-CD-A4MG-01 11 57177473 57177473 G T SLC43A3 Silent p.T394T 0.13 TCGA-CD-A4MG-01 11 57177481 57177481 A G SLC43A3 Missense_Mutation p.Y392H 0.37 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MG-01 11 57367766 57367766 G A SERPING1 Missense_Mutation p.A156T 0.23 tolerated(0.2) benign(0.241) TCGA-CD-A4MG-01 11 58477697 58477697 T C GLYAT Intron 0.34 TCGA-CD-A4MG-01 11 58972170 58972170 G C DTX4 Missense_Mutation p.A550P 0.18 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MG-01 11 58978606 58978606 A G MPEG1 Missense_Mutation p.V578A 0.31 deleterious(0) possibly_damaging(0.735) TCGA-CD-A4MG-01 11 59283285 59283285 A G OR4D9 Silent p.K300K 0.24 TCGA-CD-A4MG-01 11 59622168 59622168 T C TCN1 Missense_Mutation p.S360G 0.26 deleterious(0.03) benign(0.009) TCGA-CD-A4MG-01 11 60167907 60167907 G A MS4A14 Missense_Mutation p.D100N 0.34 tolerated(1) benign(0.005) TCGA-CD-A4MG-01 11 61040743 61040743 A G VWCE Missense_Mutation p.C543R 0.15 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 11 61089821 61089821 C A DDB1 Nonsense_Mutation p.G357* 0.08 TCGA-CD-A4MG-01 11 61113929 61113929 C T DAK Missense_Mutation p.A561V 0.09 deleterious(0) unknown(0) TCGA-CD-A4MG-01 11 61504705 61504705 G A DAGLA Missense_Mutation p.A475T 0.26 deleterious(0) probably_damaging(0.998) TCGA-CD-A4MG-01 11 61916008 61916008 G T INCENP Silent p.L755L 0.16 TCGA-CD-A4MG-01 11 62295928 62295928 G - AHNAK Frame_Shift_Del p.K1988Rfs*11 0.10 TCGA-CD-A4MG-01 11 62376074 62376074 C T EML3 Silent p.L350L 0.07 TCGA-CD-A4MG-01 11 62396391 62396391 G A GANAB Missense_Mutation p.A699V 0.24 deleterious(0) probably_damaging(0.986) TCGA-CD-A4MG-01 11 6261425 6261425 C T CNGA4 Missense_Mutation p.P134L 0.31 tolerated(1) benign(0.001) TCGA-CD-A4MG-01 11 6292398 6292399 - A CCKBR Frame_Shift_Ins p.L325Afs*4 0.20 TCGA-CD-A4MG-01 11 6292700 6292700 A G CCKBR Missense_Mutation p.D424G 0.30 tolerated(0.07) benign(0.359) TCGA-CD-A4MG-01 11 63670157 63670157 A G MARK2 Missense_Mutation p.D440G 0.21 tolerated(0.45) possibly_damaging(0.574) TCGA-CD-A4MG-01 11 639920 639920 T C DRD4 Missense_Mutation p.V224A 0.17 tolerated(0.55) unknown(0) TCGA-CD-A4MG-01 11 64026586 64026588 GAA - PLCB3 In_Frame_Del p.K466del 0.11 TCGA-CD-A4MG-01 11 6432422 6432422 G A APBB1 Silent p.S52S 0.33 TCGA-CD-A4MG-01 11 64368251 64368251 C T SLC22A12 Missense_Mutation p.A480V 0.27 deleterious(0.03) probably_damaging(0.938) TCGA-CD-A4MG-01 11 64419024 64419024 A G NRXN2 Missense_Mutation p.V874A 0.34 tolerated(0.12) probably_damaging(0.975) TCGA-CD-A4MG-01 11 64428422 64428422 A G NRXN2 Missense_Mutation p.I663T 0.35 deleterious(0) benign(0.001) TCGA-CD-A4MG-01 11 64480999 64480999 C T NRXN2 Missense_Mutation p.R58H 0.33 deleterious(0) benign(0.082) TCGA-CD-A4MG-01 11 64518009 64518009 A G PYGM Silent p.T672T 0.33 TCGA-CD-A4MG-01 11 64536983 64536983 C T SF1 Missense_Mutation p.G318D 0.26 deleterious(0.03) probably_damaging(0.918) TCGA-CD-A4MG-01 11 64567831 64567831 G T MAP4K2 Silent p.A253A 0.09 TCGA-CD-A4MG-01 11 64669448 64669448 C T ATG2A Missense_Mutation p.G1369S 0.16 tolerated(0.05) possibly_damaging(0.475) TCGA-CD-A4MG-01 11 64697972 64697972 C T PPP2R5B Silent p.L268L 0.25 TCGA-CD-A4MG-01 11 64717891 64717891 G A C11orf85 Silent p.R53R 0.29 TCGA-CD-A4MG-01 11 64806048 64806048 C T SNX15 Silent p.G223G 0.33 TCGA-CD-A4MG-01 11 64812122 64812122 C T SAC3D1 Nonsense_Mutation p.R334* 0.11 TCGA-CD-A4MG-01 11 65366996 65366996 G - MAP3K11 Frame_Shift_Del p.P692Lfs*255 0.30 TCGA-CD-A4MG-01 11 65374866 65374866 C T MAP3K11 Missense_Mutation p.R455H 0.30 deleterious(0.01) possibly_damaging(0.512) TCGA-CD-A4MG-01 11 6540866 6540866 C T DNHD1 Nonsense_Mutation p.Q477* 0.21 TCGA-CD-A4MG-01 11 65638739 65638739 C T EFEMP2 Missense_Mutation p.A86T 0.30 tolerated(0.43) benign(0.216) TCGA-CD-A4MG-01 11 65684836 65684837 - G C11orf68 3'UTR 0.21 TCGA-CD-A4MG-01 11 65787662 65787662 G A CATSPER1 Missense_Mutation p.R692W 0.13 tolerated(0.23) benign(0.01) TCGA-CD-A4MG-01 11 65793450 65793450 C A CATSPER1 Missense_Mutation p.G134V 0.38 deleterious(0.01) possibly_damaging(0.655) TCGA-CD-A4MG-01 11 66360498 66360498 C T CCDC87 5'UTR 0.09 TCGA-CD-A4MG-01 11 6646079 6646079 T G DCHS1 Silent p.T2389T 0.26 TCGA-CD-A4MG-01 11 66468267 66468267 C A SPTBN2 Missense_Mutation p.E1101D 0.31 tolerated(0.05) probably_damaging(0.992) TCGA-CD-A4MG-01 11 66616719 66616719 C A PC Missense_Mutation p.K1090N 0.33 tolerated(0.08) benign(0.013) TCGA-CD-A4MG-01 11 66813344 66813344 T A SYT12 Missense_Mutation p.L363H 0.11 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 11 67177159 67177159 C - TBC1D10C Frame_Shift_Del p.I428Sfs*126 0.30 TCGA-CD-A4MG-01 11 67234859 67234859 G A TMEM134 Silent p.S110S 0.26 TCGA-CD-A4MG-01 11 67259513 67259513 G A PITPNM1 Silent p.S1242S 0.34 TCGA-CD-A4MG-01 11 67269502 67269502 C A PITPNM1 Missense_Mutation p.E157D 0.20 deleterious(0) benign(0.04) TCGA-CD-A4MG-01 11 67286520 67286520 C T CABP2 3'UTR 0.29 TCGA-CD-A4MG-01 11 67379644 67379644 C T NDUFV1 Missense_Mutation p.P406S 0.29 tolerated_low_confidence(0.54) benign(0.014) TCGA-CD-A4MG-01 11 67799757 67799757 T C NDUFS8 Silent p.P21P 0.35 TCGA-CD-A4MG-01 11 67926058 67926058 C T SUV420H1 Silent p.L585L 0.32 TCGA-CD-A4MG-01 11 68154036 68154036 T C LRP5 Missense_Mutation p.V423A 0.27 deleterious(0) probably_damaging(0.976) TCGA-CD-A4MG-01 11 6815919 6815919 A C OR6A2 3'UTR 0.28 TCGA-CD-A4MG-01 11 68703985 68703985 G A IGHMBP2 Silent p.R679R 0.29 TCGA-CD-A4MG-01 11 68773591 68773591 C T MRGPRF Missense_Mutation p.G63R 0.08 deleterious(0) probably_damaging(0.952) TCGA-CD-A4MG-01 11 6898661 6898661 C T OR10A4 Silent p.F261F 0.09 TCGA-CD-A4MG-01 11 7079548 7079548 T C NLRP14 Missense_Mutation p.Y834H 0.24 tolerated(0.11) benign(0.001) TCGA-CD-A4MG-01 11 71293852 71293852 C T KRTAP5-11 Missense_Mutation p.G11D 0.10 deleterious_low_confidence(0.02) unknown(0) TCGA-CD-A4MG-01 11 71715028 71715028 G A NUMA1 Missense_Mutation p.R2081C 0.25 possibly_damaging(0.765) TCGA-CD-A4MG-01 11 71724872 71724872 A G NUMA1 Missense_Mutation p.L1226P 0.10 probably_damaging(0.947) TCGA-CD-A4MG-01 11 71732293 71732293 G A NUMA1 Silent p.D139D 0.30 TCGA-CD-A4MG-01 11 71907227 71907227 T - FOLR1 3'UTR 0.32 TCGA-CD-A4MG-01 11 73008546 73008546 G T P2RY6 Missense_Mutation p.R328L 0.28 deleterious_low_confidence(0.01) benign(0.1) TCGA-CD-A4MG-01 11 73179525 73179525 A G FAM168A 5'UTR 0.22 TCGA-CD-A4MG-01 11 73760478 73760478 C A C2CD3 Missense_Mutation p.Q1755H 0.09 tolerated(0.33) possibly_damaging(0.789) TCGA-CD-A4MG-01 11 73834038 73834038 C T C2CD3 Missense_Mutation p.A454T 0.32 tolerated(0.48) benign(0.076) TCGA-CD-A4MG-01 11 73933379 73933379 A G PPME1 Missense_Mutation p.Q104R 0.25 tolerated(0.38) benign(0.004) TCGA-CD-A4MG-01 11 74315840 74315840 G A POLD3 Splice_Site p.X73_splice 0.33 TCGA-CD-A4MG-01 11 75161000 75161000 G A GDPD5 Missense_Mutation p.T135M 0.24 deleterious(0) possibly_damaging(0.901) TCGA-CD-A4MG-01 11 76867932 76867932 G A MYO7A Missense_Mutation p.R206H 0.09 deleterious(0.05) probably_damaging(0.999) TCGA-CD-A4MG-01 11 77727916 77727916 C T KCTD14 Missense_Mutation p.R164Q 0.27 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MG-01 11 77885356 77885356 C A KCTD21 Missense_Mutation p.R82M 0.31 deleterious(0.04) benign(0.246) TCGA-CD-A4MG-01 11 7817567 7817567 T C OR5P2 Missense_Mutation p.H308R 0.24 tolerated_low_confidence(0.36) benign(0.001) TCGA-CD-A4MG-01 11 78369318 78369318 C T TENM4 Missense_Mutation p.V2699M 0.31 deleterious(0.02) benign(0.043) TCGA-CD-A4MG-01 11 78423525 78423525 A G TENM4 Splice_Site p.X1352_splice 0.08 TCGA-CD-A4MG-01 11 800161 800161 C T PIDD Silent p.L748L 0.33 TCGA-CD-A4MG-01 11 84634221 84634221 A C DLG2 Intron 0.25 TCGA-CD-A4MG-01 11 86519935 86519935 T C PRSS23 3'UTR 0.35 TCGA-CD-A4MG-01 11 88323855 88323855 G A GRM5 Missense_Mutation p.T535I 0.10 deleterious(0.03) probably_damaging(0.999) TCGA-CD-A4MG-01 11 8941186 8941186 T G AKIP1 3'UTR 0.33 TCGA-CD-A4MG-01 11 92087421 92087421 T G FAT3 Missense_Mutation p.F715V 0.09 benign(0.027) TCGA-CD-A4MG-01 11 92087601 92087601 A G FAT3 Missense_Mutation p.N775D 0.28 possibly_damaging(0.673) TCGA-CD-A4MG-01 11 93494790 93494790 T C C11orf54 Missense_Mutation p.L245S 0.31 tolerated(0.77) benign(0.003) TCGA-CD-A4MG-01 11 94533351 94533351 T - AMOTL1 Frame_Shift_Del p.Y334Mfs*22 0.23 TCGA-CD-A4MG-01 11 94564661 94564661 C T AMOTL1 Silent p.Y534Y 0.28 TCGA-CD-A4MG-01 11 95724791 95724791 G A MAML2 Nonsense_Mutation p.Q746* 0.09 TCGA-CD-A4MG-01 11 993307 993307 C T AP2A2 Silent p.H492H 0.24 TCGA-CD-A4MG-01 12 100200245 100200245 C T ANKS1B Silent p.A202A 0.33 TCGA-CD-A4MG-01 12 1017927 1017928 - C WNK1 Frame_Shift_Ins p.G2376Rfs*16 0.16 TCGA-CD-A4MG-01 12 10223928 10223928 C T CLEC1A 3'UTR 0.27 TCGA-CD-A4MG-01 12 102295099 102295099 T C DRAM1 Missense_Mutation p.I77T 0.20 tolerated(0.18) possibly_damaging(0.735) TCGA-CD-A4MG-01 12 102559514 102559514 C T PARPBP Missense_Mutation p.T225M 0.22 deleterious(0.03) possibly_damaging(0.779) TCGA-CD-A4MG-01 12 104376689 104376689 G A TDG Silent p.T197T 0.24 TCGA-CD-A4MG-01 12 104680896 104680896 T C TXNRD1 Intron 0.29 TCGA-CD-A4MG-01 12 106857280 106857280 T C POLR3B Silent p.Y865Y 0.31 TCGA-CD-A4MG-01 12 107712894 107712894 G A BTBD11 Missense_Mutation p.M59I 0.23 tolerated(0.07) unknown(0) TCGA-CD-A4MG-01 12 109017765 109017765 C T SELPLG Missense_Mutation p.A123T 0.24 tolerated(0.15) unknown(0) TCGA-CD-A4MG-01 12 109095026 109095026 G A CORO1C Silent p.C23C 0.33 TCGA-CD-A4MG-01 12 109181948 109181948 G A SSH1 Missense_Mutation p.T989M 0.05 deleterious_low_confidence(0.02) probably_damaging(0.915) TCGA-CD-A4MG-01 12 109675153 109675153 G A ACACB Missense_Mutation p.A1544T 0.36 tolerated(0.08) possibly_damaging(0.713) TCGA-CD-A4MG-01 12 110019240 110019240 C - MVK Frame_Shift_Del p.A141Rfs*18 0.13 TCGA-CD-A4MG-01 12 110206381 110206381 C T FAM222A Missense_Mutation p.A216V 0.27 tolerated(1) benign(0.004) TCGA-CD-A4MG-01 12 110344435 110344435 A - TCHP Frame_Shift_Del p.K174Nfs*26 0.35 TCGA-CD-A4MG-01 12 112119464 112119464 A G BRAP Silent p.G140G 0.29 TCGA-CD-A4MG-01 12 112184870 112184870 G A ACAD10 Silent p.A789A 0.31 TCGA-CD-A4MG-01 12 113515249 113515249 C T DTX1 Missense_Mutation p.R94C 0.32 deleterious(0.03) benign(0.392) TCGA-CD-A4MG-01 12 113515369 113515369 G A DTX1 Missense_Mutation p.E134K 0.38 tolerated(0.31) benign(0.009) TCGA-CD-A4MG-01 12 114793266 114793266 T C TBX5 3'UTR 0.22 TCGA-CD-A4MG-01 12 11506748 11506748 G C PRB1 Missense_Mutation p.P97A 0.06 tolerated_low_confidence(0.13) unknown(0) TCGA-CD-A4MG-01 12 11546660 11546660 G C PRB2 Missense_Mutation p.P118A 0.05 deleterious(0.04) unknown(0) TCGA-CD-A4MG-01 12 117962864 117962864 A G KSR2 Missense_Mutation p.L671P 0.22 tolerated(0.34) benign(0.051) TCGA-CD-A4MG-01 12 117977605 117977605 G - KSR2 Frame_Shift_Del p.L536Sfs*61 0.28 TCGA-CD-A4MG-01 12 119588945 119588945 C A SRRM4 Silent p.S400S 0.47 TCGA-CD-A4MG-01 12 119594401 119594401 C G SRRM4 Missense_Mutation p.A545G 0.39 deleterious_low_confidence(0) unknown(0) TCGA-CD-A4MG-01 12 120241186 120241186 G T CIT Silent p.P373P 0.21 TCGA-CD-A4MG-01 12 120568996 120568996 G A GCN1L1 Missense_Mutation p.A2519V 0.33 probably_damaging(0.91) TCGA-CD-A4MG-01 12 121093866 121093866 T C CABP1 Intron 0.10 TCGA-CD-A4MG-01 12 121890960 121890960 C T KDM2B Missense_Mutation p.R641H 0.29 deleterious(0) probably_damaging(0.998) TCGA-CD-A4MG-01 12 122181540 122181540 G A TMEM120B Silent p.T25T 0.12 TCGA-CD-A4MG-01 12 122691036 122691037 CA - B3GNT4 Frame_Shift_Del p.T81Sfs*3 0.22 TCGA-CD-A4MG-01 12 123067402 123067402 A G KNTC1 Missense_Mutation p.S1045G 0.20 tolerated(0.25) benign(0) TCGA-CD-A4MG-01 12 123970350 123970350 C T RILPL1 Silent p.T268T 0.31 TCGA-CD-A4MG-01 12 124826546 124826546 G A NCOR2 Missense_Mutation p.R1671C 0.30 probably_damaging(0.941) TCGA-CD-A4MG-01 12 124841289 124841289 G - NCOR2 Frame_Shift_Del p.P1047Lfs*16 0.33 TCGA-CD-A4MG-01 12 125460030 125460030 C T DHX37 Silent p.E305E 0.34 TCGA-CD-A4MG-01 12 125900199 125900199 G A TMEM132B Missense_Mutation p.G356D 0.12 deleterious(0) possibly_damaging(0.842) TCGA-CD-A4MG-01 12 132399917 132399917 G A ULK1 Silent p.T520T 0.18 TCGA-CD-A4MG-01 12 132603448 132603448 G A EP400NL Intron 0.44 TCGA-CD-A4MG-01 12 132624667 132624668 - G DDX51 Frame_Shift_Ins p.Q584Pfs*40 0.08 TCGA-CD-A4MG-01 12 133210851 133210851 T C POLE Silent p.L1975L 0.32 TCGA-CD-A4MG-01 12 1346032 1346032 C T ERC1 Missense_Mutation p.R817W 0.21 deleterious(0) probably_damaging(0.997) TCGA-CD-A4MG-01 12 14650664 14650664 G A ATF7IP Missense_Mutation p.S1157N 0.25 tolerated_low_confidence(0.52) unknown(0) TCGA-CD-A4MG-01 12 14809483 14809483 G T GUCY2C Missense_Mutation p.P478H 0.27 deleterious(0) probably_damaging(0.91) TCGA-CD-A4MG-01 12 18491390 18491390 A - PIK3C2G Frame_Shift_Del p.I437Yfs*5 0.23 TCGA-CD-A4MG-01 12 1863497 1863497 G A ADIPOR2 5'UTR 0.28 TCGA-CD-A4MG-01 12 20799536 20799536 A G PDE3A Silent p.S788S 0.37 TCGA-CD-A4MG-01 12 2113468 2113468 C A DCP1B Missense_Mutation p.G44C 0.22 deleterious(0.01) probably_damaging(0.972) TCGA-CD-A4MG-01 12 28603172 28603172 T A CCDC91 Missense_Mutation p.S281T 0.11 tolerated(0.17) benign(0.329) TCGA-CD-A4MG-01 12 29460683 29460683 T G FAR2 Missense_Mutation p.M213R 0.42 tolerated(0.23) benign(0.255) TCGA-CD-A4MG-01 12 3047378 3047378 C A TULP3 Silent p.S374S 0.26 TCGA-CD-A4MG-01 12 30906751 30906751 G A CAPRIN2 5'UTR 0.19 TCGA-CD-A4MG-01 12 31944762 31944762 G A H3F3C Silent p.H113H 0.29 TCGA-CD-A4MG-01 12 31945139 31945139 C T H3F3C 5'UTR 0.28 TCGA-CD-A4MG-01 12 32755213 32755213 C T FGD4 Missense_Mutation p.R319C 0.19 deleterious(0) benign(0.299) TCGA-CD-A4MG-01 12 3432669 3432669 C - RP5-1063M23.2 RNA 0.22 TCGA-CD-A4MG-01 12 344291 344291 G T SLC6A13 Missense_Mutation p.L266M 0.18 deleterious(0.02) probably_damaging(0.994) TCGA-CD-A4MG-01 12 38714328 38714328 A C ALG10B Missense_Mutation p.K245N 0.07 tolerated(0.21) benign(0.008) TCGA-CD-A4MG-01 12 39726540 39726540 T - KIF21A Frame_Shift_Del p.K903Nfs*7 0.12 TCGA-CD-A4MG-01 12 40758800 40758800 T C LRRK2 Silent p.R2446R 0.26 TCGA-CD-A4MG-01 12 42499815 42499816 - A GXYLT1 Frame_Shift_Ins p.L223Ffs*5 0.22 TCGA-CD-A4MG-01 12 46230387 46230387 G A ARID2 Missense_Mutation p.V241I 0.32 tolerated(0.2) benign(0.029) TCGA-CD-A4MG-01 12 46240687 46240687 T C ARID2 Missense_Mutation p.V516A 0.34 deleterious(0.02) possibly_damaging(0.84) TCGA-CD-A4MG-01 12 47173760 47173760 C A SLC38A4 Missense_Mutation p.A183S 0.26 tolerated(0.33) benign(0.057) TCGA-CD-A4MG-01 12 47472793 47472793 G A AMIGO2 5'UTR 0.09 TCGA-CD-A4MG-01 12 4796210 4796210 G A NDUFA9 Missense_Mutation p.R357H 0.15 deleterious(0.04) benign(0.127) TCGA-CD-A4MG-01 12 48135234 48135234 C A RAPGEF3 Intron 0.20 TCGA-CD-A4MG-01 12 48369230 48369230 G A COL2A1 Silent p.D1252D 0.25 TCGA-CD-A4MG-01 12 48372127 48372127 C A COL2A1 Missense_Mutation p.G984C 0.19 unknown(0) TCGA-CD-A4MG-01 12 48442868 48442868 C A SENP1 Missense_Mutation p.K485N 0.22 tolerated(0.09) possibly_damaging(0.626) TCGA-CD-A4MG-01 12 49170308 49170308 C T ADCY6 Missense_Mutation p.V480M 0.31 deleterious(0.03) probably_damaging(0.923) TCGA-CD-A4MG-01 12 49171486 49171486 C T ADCY6 Missense_Mutation p.V350I 0.28 deleterious(0) benign(0.266) TCGA-CD-A4MG-01 12 49319210 49319210 A C FKBP11 Translation_Start_Site p.M1? 0.27 deleterious_low_confidence(0) unknown(0) TCGA-CD-A4MG-01 12 49391774 49391774 C T DDN Silent p.G295G 0.13 TCGA-CD-A4MG-01 12 49426526 49426526 G A KMT2D Nonsense_Mutation p.Q3988* 0.29 TCGA-CD-A4MG-01 12 49434350 49434350 G A KMT2D Silent p.R2401R 0.23 TCGA-CD-A4MG-01 12 49435198 49435199 - G KMT2D Frame_Shift_Ins p.A2119Rfs*36 0.23 TCGA-CD-A4MG-01 12 49460477 49460477 T C RHEBL1 Missense_Mutation p.Y67C 0.10 deleterious(0) probably_damaging(0.932) TCGA-CD-A4MG-01 12 49937285 49937285 G T KCNH3 Missense_Mutation p.E269D 0.21 deleterious(0.03) probably_damaging(1) TCGA-CD-A4MG-01 12 49981443 49981443 C T FAM186B Missense_Mutation p.R876Q 0.38 deleterious(0) benign(0.001) TCGA-CD-A4MG-01 12 50045784 50045784 G A FMNL3 Missense_Mutation p.P512L 0.27 tolerated(0.13) benign(0.003) TCGA-CD-A4MG-01 12 51753071 51753071 C T GALNT6 Missense_Mutation p.V405I 0.21 deleterious(0) probably_damaging(0.994) TCGA-CD-A4MG-01 12 52284848 52284848 A G ANKRD33 Missense_Mutation p.Y373C 0.09 tolerated(0.11) probably_damaging(0.935) TCGA-CD-A4MG-01 12 52385715 52385715 C T ACVR1B Nonsense_Mutation p.R485* 0.08 TCGA-CD-A4MG-01 12 52757866 52757866 G A KRT85 Missense_Mutation p.R258C 0.32 tolerated(0.14) possibly_damaging(0.567) TCGA-CD-A4MG-01 12 52886684 52886684 C T KRT6A Missense_Mutation p.G97R 0.05 tolerated(0.16) unknown(0) TCGA-CD-A4MG-01 12 52962154 52962154 G A KRT74 Missense_Mutation p.A385V 0.20 deleterious(0) possibly_damaging(0.897) TCGA-CD-A4MG-01 12 53012077 53012077 C T KRT73 Missense_Mutation p.A78T 0.17 tolerated(0.08) benign(0.005) TCGA-CD-A4MG-01 12 53242666 53242666 C T KRT78 Missense_Mutation p.A17T 0.30 deleterious(0) possibly_damaging(0.483) TCGA-CD-A4MG-01 12 53453310 53453311 - C TENC1 Frame_Shift_Ins p.Q641Pfs*27 0.25 TCGA-CD-A4MG-01 12 53621285 53621285 C - RARG Frame_Shift_Del p.P16Lfs*27 0.19 TCGA-CD-A4MG-01 12 53677869 53677869 C T ESPL1 Silent p.G1035G 0.29 TCGA-CD-A4MG-01 12 53693543 53693543 G T C12orf10 Missense_Mutation p.G8C 0.32 tolerated_low_confidence(0.16) benign(0.002) TCGA-CD-A4MG-01 12 54115940 54115940 G A CALCOCO1 Missense_Mutation p.R160W 0.32 deleterious(0) probably_damaging(0.987) TCGA-CD-A4MG-01 12 54576054 54576054 A G SMUG1 Silent p.V213V 0.30 TCGA-CD-A4MG-01 12 55357525 55357525 C A TESPA1 Splice_Site p.X219_splice 0.55 TCGA-CD-A4MG-01 12 56078934 56078934 G - ITGA7 Frame_Shift_Del p.R1112Gfs*115 0.17 TCGA-CD-A4MG-01 12 56398444 56398444 C T SUOX Missense_Mutation p.P424L 0.14 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 12 56524639 56524639 C T ESYT1 Missense_Mutation p.A166V 0.25 deleterious(0.04) probably_damaging(0.999) TCGA-CD-A4MG-01 12 56623059 56623059 C T NABP2 3'UTR 0.27 TCGA-CD-A4MG-01 12 56712963 56712963 C T PAN2 Silent p.V1095V 0.23 TCGA-CD-A4MG-01 12 56749256 56749256 G A STAT2 Missense_Mutation p.R148W 0.33 deleterious(0.02) benign(0.192) TCGA-CD-A4MG-01 12 57081781 57081781 C T PTGES3 Splice_Site p.X1_splice 0.22 TCGA-CD-A4MG-01 12 57457008 57457008 T C TMEM194A Missense_Mutation p.M292V 0.24 tolerated(0.22) possibly_damaging(0.59) TCGA-CD-A4MG-01 12 57552351 57552351 C A LRP1 Silent p.A576A 0.10 TCGA-CD-A4MG-01 12 57567581 57567581 C T LRP1 Missense_Mutation p.A1122V 0.19 possibly_damaging(0.625) TCGA-CD-A4MG-01 12 57601925 57601925 G T LRP1 Missense_Mutation p.K3988N 0.09 benign(0.438) TCGA-CD-A4MG-01 12 57843578 57843578 G T INHBC Missense_Mutation p.G278W 0.12 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 12 57921401 57921401 C - MBD6 Frame_Shift_Del p.Q734Nfs*18 0.24 TCGA-CD-A4MG-01 12 57963420 57963420 G T KIF5A Missense_Mutation p.K357N 0.28 tolerated(0.07) possibly_damaging(0.476) TCGA-CD-A4MG-01 12 58007442 58007442 G A ARHGEF25 Intron 0.19 TCGA-CD-A4MG-01 12 58124639 58124639 C T AGAP2 Missense_Mutation p.G748D 0.14 deleterious(0) probably_damaging(0.923) TCGA-CD-A4MG-01 12 6101135 6101135 A G VWF Silent p.C2216C 0.10 TCGA-CD-A4MG-01 12 63544102 63544102 G A AVPR1A Missense_Mutation p.A172V 0.07 tolerated(0.4) benign(0.025) TCGA-CD-A4MG-01 12 63544335 63544335 G A AVPR1A Silent p.S94S 0.16 TCGA-CD-A4MG-01 12 64883863 64883863 A G TBK1 Silent p.L495L 0.28 TCGA-CD-A4MG-01 12 6562694 6562694 G A TAPBPL Missense_Mutation p.R126H 0.18 tolerated(0.25) benign(0.001) TCGA-CD-A4MG-01 12 65672589 65672589 G A MSRB3 Missense_Mutation p.C14Y 0.47 deleterious_low_confidence(0.05) benign(0.032) TCGA-CD-A4MG-01 12 6623974 6623974 G A NCAPD2 Missense_Mutation p.R292Q 0.19 deleterious(0.05) probably_damaging(0.966) TCGA-CD-A4MG-01 12 6650773 6650773 C T IFFO1 Silent p.R497R 0.41 TCGA-CD-A4MG-01 12 66838456 66838456 G A GRIP1 Missense_Mutation p.T480I 0.24 deleterious(0.03) possibly_damaging(0.906) TCGA-CD-A4MG-01 12 66838474 66838474 G T GRIP1 Missense_Mutation p.A474D 0.38 deleterious(0) benign(0.107) TCGA-CD-A4MG-01 12 6806668 6806668 G T PIANP Missense_Mutation p.P103H 0.28 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-CD-A4MG-01 12 69158493 69158493 G C SLC35E3 Missense_Mutation p.M255I 0.23 tolerated(0.14) benign(0.017) TCGA-CD-A4MG-01 12 6970249 6970249 A G USP5 Missense_Mutation p.M493V 0.22 tolerated(0.16) benign(0.005) TCGA-CD-A4MG-01 12 7177347 7177347 G A C1S Missense_Mutation p.V487I 0.31 tolerated(0.69) benign(0.055) TCGA-CD-A4MG-01 12 72008708 72008708 G A ZFC3H1 Missense_Mutation p.P1756S 0.22 tolerated(0.89) benign(0.003) TCGA-CD-A4MG-01 12 72026030 72026030 C A ZFC3H1 Nonsense_Mutation p.E1028* 0.28 TCGA-CD-A4MG-01 12 7249743 7249743 G A C1RL Silent p.V236V 0.09 TCGA-CD-A4MG-01 12 75601144 75601144 C T KCNC2 Missense_Mutation p.R207H 0.33 tolerated(0.55) possibly_damaging(0.512) TCGA-CD-A4MG-01 12 75601437 75601437 G A KCNC2 Silent p.G109G 0.16 TCGA-CD-A4MG-01 12 78400806 78400806 A - NAV3 Frame_Shift_Del p.K498Rfs*8 0.17 TCGA-CD-A4MG-01 12 7867867 7867867 G A DPPA3 Silent p.S57S 0.49 TCGA-CD-A4MG-01 12 81331457 81331457 C T LIN7A Silent p.A15A 0.38 TCGA-CD-A4MG-01 12 8212678 8212678 A - C3AR1 Frame_Shift_Del p.L35Yfs*16 0.14 TCGA-CD-A4MG-01 12 8212777 8212777 G A C3AR1 Missense_Mutation p.A2V 0.21 deleterious(0) benign(0.078) TCGA-CD-A4MG-01 12 85411254 85411254 A G TSPAN19 Missense_Mutation p.L192P 0.29 tolerated(0.27) benign(0.107) TCGA-CD-A4MG-01 12 91550888 91550888 G A DCN Missense_Mutation p.R206C 0.18 deleterious(0) probably_damaging(0.998) TCGA-CD-A4MG-01 12 91552181 91552181 A T DCN Missense_Mutation p.L144M 0.30 tolerated(0.16) benign(0.058) TCGA-CD-A4MG-01 12 9223124 9223124 A G A2M Missense_Mutation p.M1385T 0.16 deleterious(0) probably_damaging(0.915) TCGA-CD-A4MG-01 12 96260860 96260860 A - CCDC38 Frame_Shift_Del p.F562Lfs*4 0.28 TCGA-CD-A4MG-01 12 96380913 96380913 C T HAL Missense_Mutation p.R328Q 0.32 tolerated(0.07) benign(0.041) TCGA-CD-A4MG-01 12 96640867 96640867 C T ELK3 Silent p.R119R 0.36 TCGA-CD-A4MG-01 12 96640914 96640914 A C ELK3 Missense_Mutation p.N135T 0.09 deleterious(0) benign(0.132) TCGA-CD-A4MG-01 12 96679898 96679898 A G CDK17 Silent p.G415G 0.08 TCGA-CD-A4MG-01 12 96728628 96728628 T C CDK17 5'UTR 0.47 TCGA-CD-A4MG-01 12 97078887 97078887 G A C12orf55 Missense_Mutation p.G1962D 0.28 tolerated(0.25) benign(0.002) TCGA-CD-A4MG-01 12 97337417 97337417 T C NEDD1 Silent p.H465H 0.25 TCGA-CD-A4MG-01 12 98848955 98848955 C T SLC9A7P1 RNA 0.27 TCGA-CD-A4MG-01 13 100517132 100517133 - T CLYBL Frame_Shift_Ins p.G203Wfs*14 0.15 TCGA-CD-A4MG-01 13 103701701 103701701 A G SLC10A2 Missense_Mutation p.V286A 0.08 deleterious(0) benign(0.001) TCGA-CD-A4MG-01 13 108959260 108959260 T - TNFSF13B Frame_Shift_Del p.F279Lfs*4 0.23 TCGA-CD-A4MG-01 13 110434611 110434611 G A IRS2 Silent p.L1264L 0.15 TCGA-CD-A4MG-01 13 110434772 110434772 G A IRS2 Missense_Mutation p.A1210V 0.15 tolerated_low_confidence(0.3) benign(0.012) TCGA-CD-A4MG-01 13 110436686 110436686 C T IRS2 Missense_Mutation p.R572H 0.24 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MG-01 13 110831696 110831696 C - COL4A1 Frame_Shift_Del p.E756Rfs*46 0.17 TCGA-CD-A4MG-01 13 110835578 110835578 G - COL4A1 Frame_Shift_Del p.P648Lfs*154 0.19 TCGA-CD-A4MG-01 13 113516786 113516786 G A ATP11A Missense_Mutation p.R963H 0.19 tolerated(0.08) possibly_damaging(0.696) TCGA-CD-A4MG-01 13 113899329 113899329 C T CUL4A Missense_Mutation p.A467V 0.11 deleterious(0) probably_damaging(0.941) TCGA-CD-A4MG-01 13 113900350 113900350 G A CUL4A Silent p.T537T 0.31 TCGA-CD-A4MG-01 13 114115385 114115385 C A DCUN1D2 Missense_Mutation p.W196L 0.17 deleterious(0) probably_damaging(0.994) TCGA-CD-A4MG-01 13 114287502 114287502 A G TFDP1 Missense_Mutation p.K126E 0.20 deleterious(0.02) probably_damaging(0.917) TCGA-CD-A4MG-01 13 114469114 114469114 T C TMEM255B Missense_Mutation p.S25P 0.16 deleterious(0) probably_damaging(0.943) TCGA-CD-A4MG-01 13 20304380 20304380 T - PSPC1 Frame_Shift_Del p.N386Ifs*6 0.10 TCGA-CD-A4MG-01 13 21295977 21295977 G A IL17D Missense_Mutation p.V165M 0.07 deleterious(0) probably_damaging(0.934) TCGA-CD-A4MG-01 13 21417087 21417087 C T XPO4 Missense_Mutation p.R225H 0.24 tolerated(0.24) benign(0.177) TCGA-CD-A4MG-01 13 22246178 22246178 G - FGF9 Frame_Shift_Del p.L45Sfs*13 0.14 TCGA-CD-A4MG-01 13 23911721 23911721 A C SACS Missense_Mutation p.I2098M 0.22 benign(0.242) TCGA-CD-A4MG-01 13 24895932 24895932 C G C1QTNF9 3'UTR 0.17 TCGA-CD-A4MG-01 13 25484017 25484017 G A CENPJ Missense_Mutation p.A259V 0.08 tolerated(0.25) benign(0.124) TCGA-CD-A4MG-01 13 25745387 25745387 C T AMER2 Missense_Mutation p.R124H 0.22 tolerated(0.13) possibly_damaging(0.787) TCGA-CD-A4MG-01 13 26788943 26788943 C T RNF6 Missense_Mutation p.R359H 0.24 tolerated(0.16) benign(0.001) TCGA-CD-A4MG-01 13 27664270 27664270 A - USP12 Frame_Shift_Del p.L200* 0.22 TCGA-CD-A4MG-01 13 27679880 27679880 G A USP12 Missense_Mutation p.R111W 0.14 deleterious(0) possibly_damaging(0.682) TCGA-CD-A4MG-01 13 29600552 29600552 C - MTUS2 Frame_Shift_Del p.P584Lfs*8 0.09 TCGA-CD-A4MG-01 13 32355837 32355837 T G RXFP2 Missense_Mutation p.L272R 0.11 deleterious(0.01) possibly_damaging(0.853) TCGA-CD-A4MG-01 13 32911322 32911322 A - BRCA2 Frame_Shift_Del p.D946Ifs*14 0.18 TCGA-CD-A4MG-01 13 33306344 33306344 T C PDS5B Missense_Mutation p.F744L 0.10 tolerated(0.26) benign(0.171) TCGA-CD-A4MG-01 13 33704265 33704265 A G STARD13 Silent p.S183S 0.22 TCGA-CD-A4MG-01 13 35756615 35756615 G T NBEA Missense_Mutation p.S1594I 0.21 deleterious(0.01) benign(0.303) TCGA-CD-A4MG-01 13 36049681 36049681 G A MAB21L1 Missense_Mutation p.R199W 0.20 deleterious(0.03) possibly_damaging(0.849) TCGA-CD-A4MG-01 13 36050268 36050268 G A MAB21L1 Missense_Mutation p.A3V 0.12 deleterious(0.02) benign(0.016) TCGA-CD-A4MG-01 13 36700138 36700138 G A DCLK1 Missense_Mutation p.T46M 0.23 deleterious(0) unknown(0) TCGA-CD-A4MG-01 13 36748856 36748856 T A SOHLH2 Intron 0.24 TCGA-CD-A4MG-01 13 36776224 36776224 T - SOHLH2 Frame_Shift_Del p.I96* 0.24 TCGA-CD-A4MG-01 13 37679211 37679211 G T CSNK1A1L Missense_Mutation p.S61R 0.24 deleterious_low_confidence(0) probably_damaging(1) TCGA-CD-A4MG-01 13 37679469 37679469 G A CSNK1A1L 5'UTR 0.17 TCGA-CD-A4MG-01 13 38924055 38924055 C T UFM1 5'UTR 0.24 TCGA-CD-A4MG-01 13 39262270 39262270 C T FREM2 Silent p.G263G 0.23 TCGA-CD-A4MG-01 13 40268775 40268775 G A COG6 Missense_Mutation p.R360Q 0.09 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 13 41704639 41704639 C T KBTBD6 Missense_Mutation p.R670H 0.09 tolerated_low_confidence(0.08) benign(0.11) TCGA-CD-A4MG-01 13 42245135 42245135 G A VWA8 Nonsense_Mutation p.R1520* 0.14 TCGA-CD-A4MG-01 13 42773803 42773803 A - DGKH Frame_Shift_Del p.K797Nfs*9 0.25 TCGA-CD-A4MG-01 13 43537414 43537414 T - EPSTI1 Frame_Shift_Del p.M156* 0.22 TCGA-CD-A4MG-01 13 44455410 44455411 - A LACC1 Frame_Shift_Ins p.N99Kfs*6 0.10 TCGA-CD-A4MG-01 13 45556233 45556233 G A NUFIP1 Missense_Mutation p.P157S 0.15 tolerated(0.22) benign(0.029) TCGA-CD-A4MG-01 13 45601959 45601959 A - GPALPP1 Frame_Shift_Del p.K283Sfs*2 0.12 TCGA-CD-A4MG-01 13 46541687 46541687 G A ZC3H13 Nonsense_Mutation p.Q1425* 0.16 TCGA-CD-A4MG-01 13 46541741 46541741 G A ZC3H13 Nonsense_Mutation p.R1407* 0.29 TCGA-CD-A4MG-01 13 46543661 46543661 T - ZC3H13 Frame_Shift_Del p.K1006Nfs*31 0.25 TCGA-CD-A4MG-01 13 46543882 46543882 G A ZC3H13 Missense_Mutation p.R933C 0.17 unknown(0) TCGA-CD-A4MG-01 13 46544544 46544544 C T ZC3H13 Missense_Mutation p.R842H 0.07 unknown(0) TCGA-CD-A4MG-01 13 46585643 46585643 T C ZC3H13 Silent p.S165S 0.17 TCGA-CD-A4MG-01 13 48954327 48954327 A G RB1 Missense_Mutation p.H483R 0.22 deleterious(0.01) probably_damaging(1) TCGA-CD-A4MG-01 13 49762768 49762768 C T FNDC3A Missense_Mutation p.A648V 0.06 deleterious(0.05) benign(0.025) TCGA-CD-A4MG-01 13 50115896 50115896 C T RCBTB1 Missense_Mutation p.D414N 0.22 tolerated(0.56) benign(0.009) TCGA-CD-A4MG-01 13 50586282 50586282 T C TRIM13 Missense_Mutation p.L72P 0.16 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 13 52548156 52548156 T C ATP7B Silent p.T400T 0.19 TCGA-CD-A4MG-01 13 52548764 52548764 T C ATP7B Missense_Mutation p.R198G 0.23 tolerated(0.07) possibly_damaging(0.854) TCGA-CD-A4MG-01 13 52548993 52548993 G A ATP7B Silent p.F121F 0.11 TCGA-CD-A4MG-01 13 52639525 52639525 A G NEK5 3'UTR 0.08 TCGA-CD-A4MG-01 13 52686485 52686485 A G NEK5 Silent p.F77F 0.16 TCGA-CD-A4MG-01 13 52742203 52742203 C T MRPS31P5 RNA 0.16 TCGA-CD-A4MG-01 13 53049295 53049295 A G CKAP2 3'UTR 0.21 TCGA-CD-A4MG-01 13 53420843 53420843 C T PCDH8 Missense_Mutation p.V577I 0.22 tolerated(0.21) benign(0.021) TCGA-CD-A4MG-01 13 53420985 53420985 G A PCDH8 Silent p.N529N 0.26 TCGA-CD-A4MG-01 13 53602983 53602983 C T OLFM4 Silent p.G4G 0.17 TCGA-CD-A4MG-01 13 58299028 58299028 C A PCDH17 Missense_Mutation p.P1027H 0.18 deleterious_low_confidence(0) probably_damaging(0.94) TCGA-CD-A4MG-01 13 74289591 74289591 C T KLF12 Missense_Mutation p.R314Q 0.19 deleterious(0) probably_damaging(0.996) TCGA-CD-A4MG-01 13 77650928 77650928 T - MYCBP2 Frame_Shift_Del p.A3890Hfs*21 0.12 TCGA-CD-A4MG-01 13 77670608 77670608 G A MYCBP2 Nonsense_Mutation p.R3227* 0.21 TCGA-CD-A4MG-01 13 78177256 78177256 T C SCEL Silent p.H361H 0.30 TCGA-CD-A4MG-01 13 78475267 78475267 A - EDNRB Frame_Shift_Del p.Y383Ifs*3 0.15 TCGA-CD-A4MG-01 13 78477378 78477378 T C EDNRB Missense_Mutation p.I328M 0.20 deleterious(0.05) benign(0.086) TCGA-CD-A4MG-01 13 80113872 80113872 G T NDFIP2 Missense_Mutation p.R226I 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-CD-A4MG-01 13 88329619 88329619 C T SLITRK5 Missense_Mutation p.S659L 0.19 deleterious(0.04) benign(0.282) TCGA-CD-A4MG-01 13 88329914 88329914 C T SLITRK5 Silent p.G757G 0.07 TCGA-CD-A4MG-01 13 92051399 92051399 T C GPC5 Silent p.V33V 0.26 TCGA-CD-A4MG-01 13 93879792 93879792 G A GPC6 Missense_Mutation p.R28Q 0.16 deleterious(0.02) benign(0.104) TCGA-CD-A4MG-01 13 98043798 98043798 C A MBNL2 3'UTR 0.20 TCGA-CD-A4MG-01 13 99364824 99364825 - T SLC15A1 Frame_Shift_Ins p.N246Kfs*2 0.18 TCGA-CD-A4MG-01 13 99368134 99368134 C T SLC15A1 Missense_Mutation p.G241S 0.12 tolerated(0.08) benign(0.054) TCGA-CD-A4MG-01 14 101193447 101193447 G A DLK1 Silent p.L14L 0.24 TCGA-CD-A4MG-01 14 103363626 103363626 A - TRAF3 Frame_Shift_Del p.N285Tfs*38 0.19 TCGA-CD-A4MG-01 14 104174899 104174899 T C XRCC3 Silent p.R51R 0.16 TCGA-CD-A4MG-01 14 105416436 105416436 C T AHNAK2 Silent p.V1784V 0.05 TCGA-CD-A4MG-01 14 105418901 105418901 T C AHNAK2 Missense_Mutation p.S963G 0.08 possibly_damaging(0.546) TCGA-CD-A4MG-01 14 105954714 105954714 T C CRIP1 Missense_Mutation p.F61S 0.15 deleterious(0) probably_damaging(0.968) TCGA-CD-A4MG-01 14 106109794 106109794 T C IGHG2 Missense_Mutation p.S243G 0.29 deleterious(0.03) benign(0.028) TCGA-CD-A4MG-01 14 106173861 106173861 G A IGHA1 Missense_Mutation p.P236S 0.10 tolerated(0.16) possibly_damaging(0.873) TCGA-CD-A4MG-01 14 106845443 106845443 C T IGHV3-35 Silent p.T77T 0.30 TCGA-CD-A4MG-01 14 106994030 106994030 T A IGHV3-48 Silent p.G45G 0.06 TCGA-CD-A4MG-01 14 20859819 20859819 A C TEP1 Missense_Mutation p.V679G 0.22 deleterious(0) benign(0.037) TCGA-CD-A4MG-01 14 21025106 21025106 T - RNASE9 Frame_Shift_Del p.E47Kfs*36 0.22 TCGA-CD-A4MG-01 14 21957415 21957415 T C TOX4 Silent p.N221N 0.36 TCGA-CD-A4MG-01 14 22509262 22509262 T C TRAV20 Missense_Mutation p.F67S 0.21 tolerated(0.18) benign(0.005) TCGA-CD-A4MG-01 14 23243168 23243168 C T SLC7A7 Missense_Mutation p.R468Q 0.27 deleterious(0.02) benign(0.053) TCGA-CD-A4MG-01 14 23311783 23311783 C T MMP14 Missense_Mutation p.A182V 0.32 deleterious(0) probably_damaging(0.939) TCGA-CD-A4MG-01 14 23528387 23528387 T C ACIN1 Silent p.T1332T 0.11 TCGA-CD-A4MG-01 14 23944509 23944509 A T NGDN Missense_Mutation p.I92F 0.09 deleterious(0.01) possibly_damaging(0.548) TCGA-CD-A4MG-01 14 24523933 24523933 C T LRRC16B Missense_Mutation p.R126C 0.17 deleterious(0) possibly_damaging(0.854) TCGA-CD-A4MG-01 14 24620458 24620458 C T RNF31 Missense_Mutation p.A536V 0.26 tolerated(0.92) benign(0.006) TCGA-CD-A4MG-01 14 24654689 24654689 C A IPO4 Silent p.L418L 0.16 TCGA-CD-A4MG-01 14 24800306 24800306 G A ADCY4 Missense_Mutation p.T283M 0.18 deleterious(0.02) probably_damaging(0.999) TCGA-CD-A4MG-01 14 24808695 24808695 C T RIPK3 Nonsense_Mutation p.W43* 0.13 TCGA-CD-A4MG-01 14 24877215 24877215 C - NYNRIN Frame_Shift_Del p.P115Lfs*4 0.22 TCGA-CD-A4MG-01 14 24909625 24909625 G - SDR39U1 Frame_Shift_Del p.I183Sfs*20 0.15 TCGA-CD-A4MG-01 14 31381213 31381213 T - STRN3 Frame_Shift_Del p.K517Rfs*5 0.09 TCGA-CD-A4MG-01 14 31604737 31604737 G A HECTD1 Missense_Mutation p.H1067Y 0.32 tolerated(0.66) benign(0.026) TCGA-CD-A4MG-01 14 32295920 32295920 C T NUBPL Silent p.P231P 0.24 TCGA-CD-A4MG-01 14 32560445 32560445 A - ARHGAP5 Frame_Shift_Del p.K192Nfs*3 0.14 TCGA-CD-A4MG-01 14 32562675 32562675 T - ARHGAP5 Frame_Shift_Del p.F935Lfs*5 0.15 TCGA-CD-A4MG-01 14 35497356 35497356 A - SRP54 Frame_Shift_Del p.M465* 0.19 TCGA-CD-A4MG-01 14 35871169 35871169 T - NFKBIA 3'UTR 0.31 TCGA-CD-A4MG-01 14 36004421 36004421 C T INSM2 Silent p.N321N 0.28 TCGA-CD-A4MG-01 14 36194270 36194270 T - RALGAPA1 Frame_Shift_Del p.N609Ifs*2 0.38 TCGA-CD-A4MG-01 14 37051497 37051497 C T NKX2-8 Missense_Mutation p.R33H 0.11 tolerated(0.46) benign(0.197) TCGA-CD-A4MG-01 14 37132287 37132287 G A PAX9 Missense_Mutation p.G64S 0.10 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 14 38724473 38724473 C T CLEC14A Missense_Mutation p.R252H 0.07 tolerated(0.07) probably_damaging(0.931) TCGA-CD-A4MG-01 14 44975348 44975348 C T FSCB Silent p.A281A 0.29 TCGA-CD-A4MG-01 14 45669264 45669264 T G FANCM 3'UTR 0.29 TCGA-CD-A4MG-01 14 45693302 45693302 T C MIS18BP1 Missense_Mutation p.I830V 0.11 tolerated(0.4) benign(0.001) TCGA-CD-A4MG-01 14 52907344 52907344 T - TXNDC16 Frame_Shift_Del p.A648Qfs*3 0.26 TCGA-CD-A4MG-01 14 53513449 53513480 AAATCAGTTTTAGGCCATTCATGTCCTTCAAG TCAGTTTTAGGCCATTCATGTCCTTCA DDHD1 3'UTR 0.10 TCGA-CD-A4MG-01 14 53513591 53513591 C T DDHD1 Silent p.S866S 0.32 TCGA-CD-A4MG-01 14 57271049 57271049 G - OTX2 Frame_Shift_Del p.R44Gfs*15 0.23 TCGA-CD-A4MG-01 14 58955434 58955434 C T KIAA0586 Missense_Mutation p.A1261V 0.25 tolerated(0.27) benign(0.023) TCGA-CD-A4MG-01 14 59113370 59113370 C T DACT1 Missense_Mutation p.R677W 0.30 deleterious(0) probably_damaging(0.996) TCGA-CD-A4MG-01 14 59113705 59113705 C T DACT1 Silent p.V788V 0.10 TCGA-CD-A4MG-01 14 61518564 61518564 T - SLC38A6 Frame_Shift_Del p.L372* 0.17 TCGA-CD-A4MG-01 14 63417226 63417226 C A KCNH5 Missense_Mutation p.G332C 0.19 deleterious(0.04) probably_damaging(1) TCGA-CD-A4MG-01 14 63881885 63881885 T - PPP2R5E Frame_Shift_Del p.K174Nfs*3 0.26 TCGA-CD-A4MG-01 14 64066271 64066273 AAT - WDR89 In_Frame_Del p.I130del 0.21 TCGA-CD-A4MG-01 14 64608080 64608081 - A SYNE2 Frame_Shift_Ins p.S5002Ifs*21 0.15 TCGA-CD-A4MG-01 14 64630228 64630228 G T SYNE2 Missense_Mutation p.G5470C 0.29 possibly_damaging(0.83) TCGA-CD-A4MG-01 14 64690024 64690024 C T SYNE2 Missense_Mutation p.H6770Y 0.21 probably_damaging(0.999) TCGA-CD-A4MG-01 14 65197815 65197815 T C PLEKHG3 Silent p.I203I 0.40 TCGA-CD-A4MG-01 14 65208145 65208145 G A PLEKHG3 Missense_Mutation p.R581Q 0.23 deleterious(0.04) probably_damaging(0.995) TCGA-CD-A4MG-01 14 65239533 65239533 T C SPTB Missense_Mutation p.D1773G 0.29 deleterious(0.01) probably_damaging(0.983) TCGA-CD-A4MG-01 14 68193827 68193827 G A RDH12 Missense_Mutation p.R193H 0.33 tolerated(0.15) benign(0.001) TCGA-CD-A4MG-01 14 68217772 68217772 G A ZFYVE26 Silent p.N2471N 0.35 TCGA-CD-A4MG-01 14 70924617 70924617 G T ADAM21 Missense_Mutation p.G134V 0.34 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 14 70925702 70925702 T C ADAM21 Missense_Mutation p.C496R 0.20 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MG-01 14 71199959 71199959 G A MAP3K9 Silent p.G723G 0.35 TCGA-CD-A4MG-01 14 72055061 72055061 G A SIPA1L1 Missense_Mutation p.A158T 0.10 tolerated(0.34) benign(0.1) TCGA-CD-A4MG-01 14 72117190 72117190 G T SIPA1L1 Nonsense_Mutation p.G653* 0.24 TCGA-CD-A4MG-01 14 73491079 73491079 C T ZFYVE1 Silent p.E46E 0.07 TCGA-CD-A4MG-01 14 73563627 73563627 C T RBM25 Missense_Mutation p.A183V 0.27 benign(0.147) TCGA-CD-A4MG-01 14 73729212 73729212 C T PAPLN Silent p.C773C 0.33 TCGA-CD-A4MG-01 14 74824125 74824125 C T VRTN Silent p.H213H 0.11 TCGA-CD-A4MG-01 14 75373751 75373751 A - RPS6KL1 Frame_Shift_Del p.F539Sfs*88 0.16 TCGA-CD-A4MG-01 14 75515217 75515217 C T MLH3 Missense_Mutation p.R381H 0.11 tolerated(0.56) benign(0.001) TCGA-CD-A4MG-01 14 75537318 75537318 C T ZC2HC1C Silent p.G14G 0.22 TCGA-CD-A4MG-01 14 75601521 75601521 G T TMED10 3'UTR 0.34 TCGA-CD-A4MG-01 14 76437518 76437518 C T TGFB3 Nonsense_Mutation p.W199* 0.31 TCGA-CD-A4MG-01 14 77929018 77929018 A G AHSA1 Missense_Mutation p.T130A 0.31 tolerated(0.22) probably_damaging(0.999) TCGA-CD-A4MG-01 14 77978496 77978496 C T SPTLC2 3'UTR 0.22 TCGA-CD-A4MG-01 14 81251764 81251764 G T CEP128 Silent p.S562S 0.30 TCGA-CD-A4MG-01 14 81382809 81382809 C T CEP128 Missense_Mutation p.G28E 0.24 tolerated(0.54) benign(0.005) TCGA-CD-A4MG-01 14 88658749 88658749 C G KCNK10 Missense_Mutation p.K229N 0.37 tolerated(0.18) benign(0.059) TCGA-CD-A4MG-01 14 90770560 90770560 T C NRDE2 Missense_Mutation p.K242E 0.11 tolerated(0.35) benign(0.018) TCGA-CD-A4MG-01 14 91666132 91666132 G A C14orf159 Missense_Mutation p.G443R 0.31 deleterious(0.02) possibly_damaging(0.801) TCGA-CD-A4MG-01 14 93119308 93119308 G A RIN3 Silent p.T638T 0.32 TCGA-CD-A4MG-01 14 93125675 93125675 C T RIN3 Silent p.S732S 0.28 TCGA-CD-A4MG-01 14 93263965 93263965 G A GOLGA5 Silent p.T61T 0.10 TCGA-CD-A4MG-01 14 93305801 93305801 A G GOLGA5 3'UTR 0.19 TCGA-CD-A4MG-01 14 94149032 94149032 G A UNC79 Missense_Mutation p.V2133I 0.32 tolerated(0.62) benign(0.002) TCGA-CD-A4MG-01 14 94754760 94754760 A G SERPINA10 Silent p.C285C 0.34 TCGA-CD-A4MG-01 14 95590984 95590984 C T DICER1 Missense_Mutation p.V309I 0.21 tolerated(0.54) probably_damaging(0.99) TCGA-CD-A4MG-01 14 96707293 96707293 G A BDKRB2 Missense_Mutation p.A210T 0.11 deleterious(0) probably_damaging(0.919) TCGA-CD-A4MG-01 14 96756052 96756052 C T ATG2B Missense_Mutation p.A1983T 0.21 deleterious(0.03) possibly_damaging(0.759) TCGA-CD-A4MG-01 14 96794874 96794874 T - ATG2B Splice_Site p.X659_splice 0.19 TCGA-CD-A4MG-01 14 96858465 96858465 A G AK7 5'UTR 0.13 TCGA-CD-A4MG-01 14 99640484 99640484 G A BCL11B 3'UTR 0.28 TCGA-CD-A4MG-01 15 100214625 100214625 A T MEF2A Missense_Mutation p.M142L 0.17 tolerated(0.06) possibly_damaging(0.455) TCGA-CD-A4MG-01 15 100339879 100339879 C T DNM1P46 RNA 0.22 TCGA-CD-A4MG-01 15 100649211 100649211 C T ADAMTS17 Missense_Mutation p.V667M 0.18 deleterious(0) possibly_damaging(0.884) TCGA-CD-A4MG-01 15 102292715 102292715 G A DNM1P47 RNA 0.33 TCGA-CD-A4MG-01 15 102358469 102358469 T - OR4F15 Frame_Shift_Del p.F28Lfs*12 0.09 TCGA-CD-A4MG-01 15 23890497 23890497 G T MAGEL2 Missense_Mutation p.P195H 0.32 deleterious(0) probably_damaging(0.936) TCGA-CD-A4MG-01 15 24921102 24921102 C T NPAP1 Missense_Mutation p.R30W 0.17 deleterious_low_confidence(0.02) possibly_damaging(0.835) TCGA-CD-A4MG-01 15 24922701 24922701 G A NPAP1 Missense_Mutation p.A563T 0.09 tolerated(0.43) benign(0.013) TCGA-CD-A4MG-01 15 25468331 25468331 A C SNORD115-27 3'Flank 0.42 TCGA-CD-A4MG-01 15 25925976 25925976 C T ATP10A Missense_Mutation p.G1220D 0.07 deleterious(0.01) benign(0.056) TCGA-CD-A4MG-01 15 27571974 27571974 T - GABRG3 Frame_Shift_Del p.F98Lfs*16 0.10 TCGA-CD-A4MG-01 15 28389353 28389353 G A HERC2 Silent p.C3723C 0.29 TCGA-CD-A4MG-01 15 28408275 28408275 C T HERC2 Missense_Mutation p.A3571T 0.33 benign(0.043) TCGA-CD-A4MG-01 15 28501287 28501287 C T HERC2 Silent p.L898L 0.24 TCGA-CD-A4MG-01 15 29997794 29997794 T C TJP1 Missense_Mutation p.Q1669R 0.30 deleterious(0) possibly_damaging(0.867) TCGA-CD-A4MG-01 15 31239334 31239334 G A MTMR10 Missense_Mutation p.T516M 0.07 tolerated(0.17) benign(0.048) TCGA-CD-A4MG-01 15 32460211 32460211 G A CHRNA7 Missense_Mutation p.R383H 0.16 tolerated(0.11) benign(0.233) TCGA-CD-A4MG-01 15 32928134 32928134 T G ARHGAP11A Intron 0.41 TCGA-CD-A4MG-01 15 33066463 33066463 G A FMN1 3'UTR 0.29 TCGA-CD-A4MG-01 15 33938573 33938573 A G RYR3 Missense_Mutation p.M1263V 0.25 benign(0) TCGA-CD-A4MG-01 15 34014936 34014936 G A RYR3 Missense_Mutation p.A2214T 0.38 probably_damaging(0.962) TCGA-CD-A4MG-01 15 35210478 35210478 A G AQR Silent p.T441T 0.31 TCGA-CD-A4MG-01 15 35224524 35224524 A - AQR Frame_Shift_Del p.S299Pfs*23 0.13 TCGA-CD-A4MG-01 15 35274382 35274383 - T ZNF770 Frame_Shift_Ins p.N418Kfs*15 0.20 TCGA-CD-A4MG-01 15 37390309 37390309 G - MEIS2 Frame_Shift_Del p.P35Rfs*5 0.10 TCGA-CD-A4MG-01 15 38811574 38811574 T C RASGRP1 Splice_Site p.X109_splice 0.13 TCGA-CD-A4MG-01 15 40030381 40030381 G T FSIP1 Missense_Mutation p.P268T 0.13 tolerated(0.23) benign(0.2) TCGA-CD-A4MG-01 15 40396520 40396520 G T BMF Missense_Mutation p.P105H 0.22 tolerated(0.61) probably_damaging(0.987) TCGA-CD-A4MG-01 15 41043668 41043668 C T RMDN3 Silent p.T160T 0.10 TCGA-CD-A4MG-01 15 41105094 41105095 GA - ZFYVE19 Frame_Shift_Del p.R343Sfs*12 0.19 TCGA-CD-A4MG-01 15 41165524 41165524 C A RHOV Missense_Mutation p.R148M 0.33 deleterious(0.02) benign(0.115) TCGA-CD-A4MG-01 15 41192775 41192775 G A VPS18 Missense_Mutation p.A587T 0.37 tolerated(0.62) benign(0.001) TCGA-CD-A4MG-01 15 41195558 41195558 G - VPS18 3'UTR 0.13 TCGA-CD-A4MG-01 15 41195661 41195661 G A VPS18 3'UTR 0.25 TCGA-CD-A4MG-01 15 41245901 41245901 C T CHAC1 Silent p.S82S 0.11 TCGA-CD-A4MG-01 15 41650447 41650447 T C NUSAP1 Silent p.N217N 0.23 TCGA-CD-A4MG-01 15 41795299 41795299 G A ITPKA Missense_Mutation p.E441K 0.33 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 15 41813935 41813935 C T RPAP1 Splice_Site p.X1013_splice 0.33 TCGA-CD-A4MG-01 15 41819247 41819247 A G RPAP1 Missense_Mutation p.L589P 0.08 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 15 41859581 41859581 G A TYRO3 Nonsense_Mutation p.W269* 0.18 TCGA-CD-A4MG-01 15 42058413 42058413 G A MGA Silent p.V2711V 0.29 TCGA-CD-A4MG-01 15 42144453 42144453 A G SPTBN5 Missense_Mutation p.L3504P 0.20 benign(0.003) TCGA-CD-A4MG-01 15 42147121 42147121 C A SPTBN5 Missense_Mutation p.Q3159H 0.29 probably_damaging(0.991) TCGA-CD-A4MG-01 15 42158575 42158575 C A SPTBN5 Missense_Mutation p.Q2199H 0.29 benign(0.045) TCGA-CD-A4MG-01 15 42742957 42742957 A - ZNF106 Frame_Shift_Del p.S482Pfs*33 0.28 TCGA-CD-A4MG-01 15 42743622 42743622 G A ZNF106 Missense_Mutation p.T260I 0.15 tolerated(0.06) benign(0.043) TCGA-CD-A4MG-01 15 43621423 43621423 A G LCMT2 Missense_Mutation p.M422T 0.31 tolerated(0.1) benign(0.013) TCGA-CD-A4MG-01 15 43820775 43820775 C - MAP1A Frame_Shift_Del p.P2370Qfs*84 0.22 TCGA-CD-A4MG-01 15 44166387 44166387 G A FRMD5 Missense_Mutation p.T470I 0.18 tolerated(0.31) benign(0.019) TCGA-CD-A4MG-01 15 44944338 44944338 G T SPG11 Missense_Mutation p.F332L 0.18 tolerated(0.17) probably_damaging(0.916) TCGA-CD-A4MG-01 15 45725366 45725366 A G C15orf48 3'UTR 0.25 TCGA-CD-A4MG-01 15 48797314 48797314 C T FBN1 Missense_Mutation p.C623Y 0.29 probably_damaging(0.997) TCGA-CD-A4MG-01 15 49033864 49033864 C T CEP152 Missense_Mutation p.A1343T 0.09 deleterious(0) possibly_damaging(0.818) TCGA-CD-A4MG-01 15 50494701 50494701 A G SLC27A2 Missense_Mutation p.M236V 0.33 tolerated(1) benign(0.001) TCGA-CD-A4MG-01 15 50884195 50884195 T - TRPM7 Frame_Shift_Del p.S1413Afs*29 0.25 TCGA-CD-A4MG-01 15 51504602 51504602 T - CYP19A1 Frame_Shift_Del p.N393Tfs*4 0.22 TCGA-CD-A4MG-01 15 52615583 52615583 A - MYO5A Frame_Shift_Del p.L1565Cfs*4 0.25 TCGA-CD-A4MG-01 15 54003111 54003111 C T WDR72 Silent p.V299V 0.08 TCGA-CD-A4MG-01 15 57574703 57574703 C T TCF12 Missense_Mutation p.A680V 0.21 tolerated(0.11) benign(0.073) TCGA-CD-A4MG-01 15 58465365 58465365 G T AQP9 Missense_Mutation p.A113S 0.28 tolerated(0.15) possibly_damaging(0.764) TCGA-CD-A4MG-01 15 59499135 59499135 C T LDHAL6B 5'UTR 0.15 TCGA-CD-A4MG-01 15 59911535 59911535 G A GCNT3 Nonsense_Mutation p.W366* 0.19 TCGA-CD-A4MG-01 15 63047787 63047787 C T TLN2 Silent p.C1511C 0.25 TCGA-CD-A4MG-01 15 63881043 63881043 A - USP3 Intron 0.23 TCGA-CD-A4MG-01 15 64424071 64424071 C T SNX1 Missense_Mutation p.R401C 0.23 deleterious(0.02) probably_damaging(0.993) TCGA-CD-A4MG-01 15 65350892 65350892 C T RASL12 Missense_Mutation p.V100I 0.29 tolerated(1) benign(0.002) TCGA-CD-A4MG-01 15 65369317 65369317 C T KBTBD13 Missense_Mutation p.A55V 0.33 tolerated(0.23) benign(0.243) TCGA-CD-A4MG-01 15 65370228 65370228 G A KBTBD13 Missense_Mutation p.G359R 0.31 tolerated(0.09) probably_damaging(1) TCGA-CD-A4MG-01 15 65856652 65856652 C T PTPLAD1 Missense_Mutation p.T211M 0.10 deleterious(0) possibly_damaging(0.627) TCGA-CD-A4MG-01 15 65918027 65918027 C A SLC24A1 Missense_Mutation p.L537I 0.24 possibly_damaging(0.874) TCGA-CD-A4MG-01 15 65983682 65983682 T G DENND4A Missense_Mutation p.M1083L 0.33 tolerated(0.35) benign(0.004) TCGA-CD-A4MG-01 15 65993442 65993442 T C DENND4A Missense_Mutation p.Q883R 0.19 tolerated(0.1) possibly_damaging(0.728) TCGA-CD-A4MG-01 15 66587407 66587407 A G DIS3L Missense_Mutation p.E74G 0.08 deleterious(0) probably_damaging(0.996) TCGA-CD-A4MG-01 15 66795088 66795088 T C RPL4 Missense_Mutation p.M95V 0.28 deleterious(0) probably_damaging(0.947) TCGA-CD-A4MG-01 15 68500514 68500514 C A CLN6 Missense_Mutation p.W300C 0.24 deleterious_low_confidence(0.03) probably_damaging(0.999) TCGA-CD-A4MG-01 15 68599709 68599709 G A ITGA11 Missense_Mutation p.R1120C 0.44 deleterious(0.02) possibly_damaging(0.696) TCGA-CD-A4MG-01 15 70976697 70976697 C T UACA Missense_Mutation p.A231T 0.30 tolerated(0.23) benign(0.407) TCGA-CD-A4MG-01 15 72432223 72432223 T - SENP8 Frame_Shift_Del p.L88* 0.33 TCGA-CD-A4MG-01 15 73048721 73048721 G A ADPGK Silent p.N237N 0.08 TCGA-CD-A4MG-01 15 73884433 73884433 G T NPTN Missense_Mutation p.P162H 0.13 deleterious(0.04) possibly_damaging(0.652) TCGA-CD-A4MG-01 15 73996289 73996289 C T CD276 Silent p.F341F 0.38 TCGA-CD-A4MG-01 15 74426790 74426790 C A ISLR2 Silent p.S565S 0.27 TCGA-CD-A4MG-01 15 74467758 74467758 G A ISLR Missense_Mutation p.G187S 0.28 tolerated(1) benign(0.022) TCGA-CD-A4MG-01 15 74921020 74921020 A G CLK3 Missense_Mutation p.T549A 0.18 tolerated(0.11) possibly_damaging(0.866) TCGA-CD-A4MG-01 15 75117939 75117939 C T LMAN1L Missense_Mutation p.P525L 0.29 tolerated_low_confidence(0.11) benign(0.07) TCGA-CD-A4MG-01 15 75248399 75248399 G T RPP25 Missense_Mutation p.P176T 0.16 tolerated(0.08) benign(0) TCGA-CD-A4MG-01 15 75501123 75501125 CTT - C15orf39 In_Frame_Del p.L913del 0.12 TCGA-CD-A4MG-01 15 75722636 75722636 A - SIN3A Frame_Shift_Del p.P28Lfs*31 0.10 TCGA-CD-A4MG-01 15 75968881 75968881 G A CSPG4 Silent p.G1993G 0.38 TCGA-CD-A4MG-01 15 77474065 77474065 T - PEAK1 Frame_Shift_Del p.K68Nfs*4 0.22 TCGA-CD-A4MG-01 15 78384986 78384986 C T SH2D7 Silent p.S20S 0.31 TCGA-CD-A4MG-01 15 78390335 78390335 G A SH2D7 Missense_Mutation p.G111R 0.30 deleterious(0) possibly_damaging(0.812) TCGA-CD-A4MG-01 15 78401696 78401696 G A CIB2 Missense_Mutation p.A76V 0.19 deleterious(0.01) benign(0.079) TCGA-CD-A4MG-01 15 79066978 79066978 C - ADAMTS7 Frame_Shift_Del p.V622Wfs*5 0.19 TCGA-CD-A4MG-01 15 79323808 79323808 G A RASGRF1 Missense_Mutation p.T399M 0.26 deleterious(0) probably_damaging(0.994) TCGA-CD-A4MG-01 15 79755409 79755409 G A KIAA1024 Missense_Mutation p.A767T 0.10 tolerated(0.27) benign(0.072) TCGA-CD-A4MG-01 15 80181594 80181594 G A ST20-MTHFS Nonsense_Mutation p.R50* 0.10 TCGA-CD-A4MG-01 15 81295628 81295628 T C MESDC1 Missense_Mutation p.L339P 0.36 deleterious(0.01) probably_damaging(0.994) TCGA-CD-A4MG-01 15 81572089 81572089 T C IL16 Missense_Mutation p.I352T 0.22 tolerated(0.16) benign(0.33) TCGA-CD-A4MG-01 15 82336383 82336383 G - MEX3B Frame_Shift_Del p.G277Afs*49 0.20 TCGA-CD-A4MG-01 15 82443856 82443856 A G EFTUD1 Missense_Mutation p.L980P 0.09 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 15 83218385 83218385 T G CPEB1 Missense_Mutation p.L408F 0.28 deleterious(0) possibly_damaging(0.848) TCGA-CD-A4MG-01 15 83686891 83686891 A - BTBD1 Frame_Shift_Del p.F459Lfs*12 0.17 TCGA-CD-A4MG-01 15 85383099 85383099 G T ALPK3 Nonsense_Mutation p.E399* 0.32 TCGA-CD-A4MG-01 15 85407851 85407851 C T ALPK3 Silent p.L1762L 0.17 TCGA-CD-A4MG-01 15 85438268 85438268 C T SLC28A1 Silent p.H125H 0.21 TCGA-CD-A4MG-01 15 86262364 86262364 A G AKAP13 Missense_Mutation p.Y2024C 0.10 deleterious(0) probably_damaging(0.998) TCGA-CD-A4MG-01 15 88576217 88576217 G T NTRK3 Missense_Mutation p.H486N 0.20 tolerated(0.26) benign(0.001) TCGA-CD-A4MG-01 15 89398379 89398379 C T ACAN Missense_Mutation p.P855S 0.21 tolerated(0.11) possibly_damaging(0.474) TCGA-CD-A4MG-01 15 89858575 89858575 C T FANCI Silent p.I1293I 0.17 TCGA-CD-A4MG-01 15 90137717 90137717 C T TICRR Missense_Mutation p.A538V 0.43 deleterious(0) benign(0.363) TCGA-CD-A4MG-01 15 90167738 90167738 G A TICRR Silent p.Q1399Q 0.46 TCGA-CD-A4MG-01 15 90177089 90177089 G A KIF7 Missense_Mutation p.T807M 0.08 deleterious(0) probably_damaging(0.997) TCGA-CD-A4MG-01 15 90348617 90348617 G A ANPEP Missense_Mutation p.A231V 0.22 deleterious(0) probably_damaging(0.989) TCGA-CD-A4MG-01 15 91436921 91436921 A C FES Missense_Mutation p.N695H 0.26 deleterious(0.02) benign(0.068) TCGA-CD-A4MG-01 15 91517829 91517829 C T PRC1 Missense_Mutation p.A446T 0.29 deleterious(0.04) benign(0.03) TCGA-CD-A4MG-01 15 91543776 91543776 T G VPS33B Missense_Mutation p.M509L 0.30 tolerated(0.25) benign(0.012) TCGA-CD-A4MG-01 15 93609185 93609185 G - RGMA Intron 0.15 TCGA-CD-A4MG-01 16 10850599 10850599 C A NUBP1 Missense_Mutation p.P138H 0.21 deleterious(0.02) benign(0.119) TCGA-CD-A4MG-01 16 11000930 11000930 G A CIITA Silent p.G527G 0.10 TCGA-CD-A4MG-01 16 11214578 11214578 G A CLEC16A Silent p.V741V 0.24 TCGA-CD-A4MG-01 16 11940598 11940598 G A RSL1D1 Missense_Mutation p.R163W 0.08 tolerated(0.06) possibly_damaging(0.537) TCGA-CD-A4MG-01 16 1273479 1273479 G A TPSG1 Silent p.C63C 0.38 TCGA-CD-A4MG-01 16 1395287 1395287 C A BAIAP3 Missense_Mutation p.P695T 0.09 tolerated(0.96) benign(0.097) TCGA-CD-A4MG-01 16 14020477 14020477 C T ERCC4 Missense_Mutation p.R150C 0.21 deleterious(0) probably_damaging(0.993) TCGA-CD-A4MG-01 16 14029286 14029286 A - ERCC4 Frame_Shift_Del p.K500Nfs*19 0.25 TCGA-CD-A4MG-01 16 1498368 1498368 G A CLCN7 Silent p.A667A 0.08 TCGA-CD-A4MG-01 16 15719251 15719251 T - KIAA0430 Frame_Shift_Del p.N644Ifs*29 0.09 TCGA-CD-A4MG-01 16 15814019 15814019 G A MYH11 Missense_Mutation p.R1655C 0.09 probably_damaging(1) TCGA-CD-A4MG-01 16 15818530 15818530 G A MYH11 Missense_Mutation p.R1371C 0.08 probably_damaging(1) TCGA-CD-A4MG-01 16 1605054 1605054 G A TMEM204 3'UTR 0.08 TCGA-CD-A4MG-01 16 17211773 17211773 T C XYLT1 Missense_Mutation p.M763V 0.31 tolerated(0.31) benign(0.215) TCGA-CD-A4MG-01 16 1826089 1826089 G T EME2 Silent p.T330T 0.31 TCGA-CD-A4MG-01 16 1836584 1836584 A G NUBP2 Silent p.S21S 0.31 TCGA-CD-A4MG-01 16 18890990 18890990 A - SMG1 Frame_Shift_Del p.S449Lfs*5 0.09 TCGA-CD-A4MG-01 16 19468198 19468201 CAGT - TMC5 Intron 0.26 TCGA-CD-A4MG-01 16 19548632 19548632 A - CCP110 Frame_Shift_Del p.N549Tfs*6 0.24 TCGA-CD-A4MG-01 16 19722724 19722724 T - KNOP1 Frame_Shift_Del p.G320Afs*8 0.25 TCGA-CD-A4MG-01 16 19725742 19725742 T C KNOP1 Missense_Mutation p.R206G 0.13 deleterious(0.02) possibly_damaging(0.787) TCGA-CD-A4MG-01 16 1994822 1994822 A G RPL3L 3'UTR 0.07 TCGA-CD-A4MG-01 16 2024398 2024398 G T TBL3 Missense_Mutation p.A71S 0.25 tolerated(0.83) benign(0.008) TCGA-CD-A4MG-01 16 20360287 20360287 G A UMOD Silent p.C112C 0.33 TCGA-CD-A4MG-01 16 20477014 20477014 A G ACSM2A Missense_Mutation p.E118G 0.25 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 16 20752923 20752923 G T THUMPD1 Missense_Mutation p.L47I 0.27 deleterious(0) possibly_damaging(0.893) TCGA-CD-A4MG-01 16 20944658 20944658 C T DNAH3 Missense_Mutation p.A4057T 0.17 tolerated(0.32) benign(0.009) TCGA-CD-A4MG-01 16 21049197 21049197 G A DNAH3 Silent p.A1612A 0.08 TCGA-CD-A4MG-01 16 2127694 2127694 G A TSC2 Missense_Mutation p.R978H 0.31 deleterious(0.02) benign(0.052) TCGA-CD-A4MG-01 16 2155908 2155908 G A PKD1 Silent p.H2607H 0.48 TCGA-CD-A4MG-01 16 2164302 2164302 C T PKD1 Missense_Mutation p.V908M 0.33 benign(0.017) TCGA-CD-A4MG-01 16 2167014 2167014 C - PKD1 Frame_Shift_Del p.V476Wfs*82 0.17 TCGA-CD-A4MG-01 16 21716605 21716605 G A OTOA Missense_Mutation p.V366I 0.18 tolerated(0.14) benign(0.1) TCGA-CD-A4MG-01 16 23079695 23079695 A C USP31 Missense_Mutation p.L1244R 0.24 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-CD-A4MG-01 16 23641270 23641270 T C PALB2 Silent p.P735P 0.31 TCGA-CD-A4MG-01 16 24226285 24226285 C A PRKCB 3'UTR 0.30 TCGA-CD-A4MG-01 16 24582804 24582804 A - RBBP6 Frame_Shift_Del p.T1475Lfs*20 0.14 TCGA-CD-A4MG-01 16 24788440 24788440 C A TNRC6A Missense_Mutation p.P117Q 0.13 tolerated_low_confidence(0.11) benign(0.001) TCGA-CD-A4MG-01 16 24805922 24805922 G T TNRC6A Missense_Mutation p.R1137L 0.08 tolerated(0.1) probably_damaging(0.96) TCGA-CD-A4MG-01 16 2503500 2503500 C T CCNF Silent p.H559H 0.30 TCGA-CD-A4MG-01 16 2578060 2578060 G T AMDHD2 Splice_Site p.X210_splice 0.12 TCGA-CD-A4MG-01 16 27374237 27374237 C T IL4R Missense_Mutation p.H522Y 0.24 tolerated(0.14) benign(0.24) TCGA-CD-A4MG-01 16 27476039 27476039 G A GTF3C1 Missense_Mutation p.A1825V 0.32 tolerated(0.14) benign(0.08) TCGA-CD-A4MG-01 16 2816741 2816743 CTC - SRRM2 In_Frame_Del p.P2073del 0.29 TCGA-CD-A4MG-01 16 28222702 28222702 G - XPO6 5'UTR 0.09 TCGA-CD-A4MG-01 16 28878287 28878287 G A SH2B1 Missense_Mutation p.R291H 0.23 deleterious(0) probably_damaging(0.944) TCGA-CD-A4MG-01 16 28993318 28993318 C T SPNS1 Silent p.R302R 0.16 TCGA-CD-A4MG-01 16 28995158 28995158 C T SPNS1 Missense_Mutation p.R458W 0.31 tolerated(0.21) benign(0.068) TCGA-CD-A4MG-01 16 29845333 29845333 C T MVP Missense_Mutation p.R175W 0.30 deleterious(0) probably_damaging(0.998) TCGA-CD-A4MG-01 16 29847044 29847044 C T MVP Silent p.T199T 0.28 TCGA-CD-A4MG-01 16 2988286 2988286 G C FLYWCH1 Missense_Mutation p.V626L 0.26 deleterious(0.03) probably_damaging(0.943) TCGA-CD-A4MG-01 16 30486631 30486631 A G ITGAL Missense_Mutation p.I57V 0.33 tolerated(1) benign(0.001) TCGA-CD-A4MG-01 16 30594513 30594513 C T ZNF785 Missense_Mutation p.G196R 0.10 deleterious(0.02) probably_damaging(0.997) TCGA-CD-A4MG-01 16 3063378 3063378 C A CLDN9 Silent p.G5G 0.16 TCGA-CD-A4MG-01 16 3063462 3063462 C T CLDN9 Silent p.T33T 0.27 TCGA-CD-A4MG-01 16 30723043 30723043 G T SRCAP Missense_Mutation p.Q490H 0.11 unknown(0) TCGA-CD-A4MG-01 16 30727671 30727671 G A SRCAP Silent p.Q896Q 0.13 TCGA-CD-A4MG-01 16 30779269 30779269 A G RNF40 Missense_Mutation p.H495R 0.26 tolerated(0.65) benign(0.008) TCGA-CD-A4MG-01 16 30795244 30795244 C T ZNF629 Silent p.L135L 0.23 TCGA-CD-A4MG-01 16 30941444 30941444 G A FBXL19 Silent p.P300P 0.08 TCGA-CD-A4MG-01 16 31089161 31089161 G A ZNF646 Missense_Mutation p.A506T 0.38 deleterious(0) probably_damaging(0.996) TCGA-CD-A4MG-01 16 31091608 31091608 C T ZNF646 Silent p.H1321H 0.34 TCGA-CD-A4MG-01 16 31092372 31092372 G A ZNF646 Missense_Mutation p.S1576N 0.26 tolerated(0.33) benign(0.277) TCGA-CD-A4MG-01 16 31092982 31092982 C G ZNF646 Missense_Mutation p.H1779Q 0.24 deleterious(0.02) probably_damaging(0.98) TCGA-CD-A4MG-01 16 31343009 31343009 C T ITGAM Missense_Mutation p.P1148L 0.43 tolerated(0.17) benign(0.11) TCGA-CD-A4MG-01 16 3350247 3350247 G A TIGD7 Missense_Mutation p.T123I 0.34 deleterious(0.04) possibly_damaging(0.863) TCGA-CD-A4MG-01 16 3493136 3493136 C T ZNF597 Silent p.P6P 0.28 TCGA-CD-A4MG-01 16 3652117 3652117 A G SLX4 Splice_Site p.X317_splice 0.23 TCGA-CD-A4MG-01 16 3726065 3726065 C A TRAP1 Missense_Mutation p.K262N 0.22 tolerated(0.06) benign(0.13) TCGA-CD-A4MG-01 16 3795299 3795299 T C CREBBP Missense_Mutation p.Y1298C 0.23 unknown(0) TCGA-CD-A4MG-01 16 3799628 3799628 G A CREBBP Missense_Mutation p.P1279L 0.40 unknown(0) TCGA-CD-A4MG-01 16 3820945 3820945 G T CREBBP Missense_Mutation p.L836M 0.19 possibly_damaging(0.459) TCGA-CD-A4MG-01 16 4027532 4027532 C T ADCY9 Missense_Mutation p.V927M 0.30 deleterious(0.02) benign(0.079) TCGA-CD-A4MG-01 16 425374 425374 C T TMEM8A Missense_Mutation p.G429D 0.22 deleterious(0.03) benign(0.071) TCGA-CD-A4MG-01 16 4308073 4308073 C - TFAP4 Frame_Shift_Del p.D334Tfs*33 0.12 TCGA-CD-A4MG-01 16 4412678 4412678 G T CORO7 Missense_Mutation p.P446H 0.25 deleterious(0.03) possibly_damaging(0.855) TCGA-CD-A4MG-01 16 449051 449051 G A NME4 Silent p.R51R 0.27 TCGA-CD-A4MG-01 16 4650137 4650137 C T C16orf96 Missense_Mutation p.S1082L 0.44 tolerated(0.17) possibly_damaging(0.519) TCGA-CD-A4MG-01 16 46943701 46943701 G A GPT2 Missense_Mutation p.A228T 0.26 tolerated(0.16) benign(0.258) TCGA-CD-A4MG-01 16 46962940 46962940 C T GPT2 3'UTR 0.32 TCGA-CD-A4MG-01 16 47409816 47409816 T C ITFG1 Missense_Mutation p.T231A 0.10 tolerated(0.59) benign(0.001) TCGA-CD-A4MG-01 16 47630429 47630429 C T PHKB Silent p.I450I 0.24 TCGA-CD-A4MG-01 16 47684785 47684785 A - PHKB Frame_Shift_Del p.G644Efs*2 0.22 TCGA-CD-A4MG-01 16 4944500 4944500 G - PPL Frame_Shift_Del p.T455Qfs*37 0.24 TCGA-CD-A4MG-01 16 49671548 49671548 G T ZNF423 Silent p.G505G 0.27 TCGA-CD-A4MG-01 16 49764730 49764730 C T ZNF423 Missense_Mutation p.E77K 0.26 tolerated(0.2) benign(0.212) TCGA-CD-A4MG-01 16 49823441 49823441 G T ZNF423 Silent p.A11A 0.22 TCGA-CD-A4MG-01 16 5064915 5064915 G A SEC14L5 Missense_Mutation p.A679T 0.08 tolerated(0.49) unknown(0) TCGA-CD-A4MG-01 16 51175621 51175621 G A SALL1 Missense_Mutation p.A171V 0.30 tolerated(0.22) probably_damaging(0.997) TCGA-CD-A4MG-01 16 55360397 55360397 C T IRX6 Silent p.G65G 0.33 TCGA-CD-A4MG-01 16 55523700 55523700 G A MMP2 Missense_Mutation p.D382N 0.10 deleterious(0.04) probably_damaging(0.996) TCGA-CD-A4MG-01 16 55705783 55705783 A G SLC6A2 Intron 0.23 TCGA-CD-A4MG-01 16 55719063 55719063 T C SLC6A2 Missense_Mutation p.V218A 0.32 deleterious(0) probably_damaging(0.956) TCGA-CD-A4MG-01 16 55866923 55866923 C T CES1 Silent p.A15A 0.19 TCGA-CD-A4MG-01 16 56782280 56782280 G T NUP93 Nonsense_Mutation p.E41* 0.13 TCGA-CD-A4MG-01 16 57004961 57004961 C T CETP Nonsense_Mutation p.Q182* 0.18 TCGA-CD-A4MG-01 16 57059400 57059400 G A NLRC5 Missense_Mutation p.R182H 0.35 tolerated(0.08) benign(0.066) TCGA-CD-A4MG-01 16 57549292 57549292 C A CCDC102A Missense_Mutation p.S495I 0.47 deleterious(0.01) possibly_damaging(0.691) TCGA-CD-A4MG-01 16 57697539 57697539 C T GPR56 3'UTR 0.26 TCGA-CD-A4MG-01 16 57803606 57803606 C T KIFC3 Silent p.P373P 0.09 TCGA-CD-A4MG-01 16 57918077 57918077 C A CNGB1 Missense_Mutation p.K1249N 0.07 tolerated_low_confidence(0.06) benign(0.264) TCGA-CD-A4MG-01 16 58030907 58030907 G A ZNF319 Silent p.P421P 0.10 TCGA-CD-A4MG-01 16 58438451 58438451 T A GINS3 Missense_Mutation p.Y196N 0.33 tolerated(0.08) benign(0.229) TCGA-CD-A4MG-01 16 58594174 58594174 A G CNOT1 Missense_Mutation p.V691A 0.09 tolerated(0.06) benign(0.015) TCGA-CD-A4MG-01 16 58620474 58620474 G A CNOT1 Silent p.D204D 0.27 TCGA-CD-A4MG-01 16 58713974 58713974 G A SLC38A7 Silent p.A19A 0.29 TCGA-CD-A4MG-01 16 624400 624400 C T PIGQ Missense_Mutation p.A109V 0.19 tolerated_low_confidence(0.27) benign(0.16) TCGA-CD-A4MG-01 16 67070635 67070635 G A CBFB Missense_Mutation p.D87N 0.19 tolerated(0.14) possibly_damaging(0.647) TCGA-CD-A4MG-01 16 67286519 67286519 G - SLC9A5 Frame_Shift_Del p.G89Efs*53 0.21 TCGA-CD-A4MG-01 16 67477019 67477019 G A ATP6V0D1 Missense_Mutation p.R182C 0.22 deleterious(0) probably_damaging(0.998) TCGA-CD-A4MG-01 16 67576573 67576573 T C FAM65A Silent p.S648S 0.21 TCGA-CD-A4MG-01 16 67683419 67683419 G A RLTPR Missense_Mutation p.A606T 0.17 deleterious(0) benign(0.012) TCGA-CD-A4MG-01 16 67695812 67695812 C T PARD6A Silent p.S101S 0.21 TCGA-CD-A4MG-01 16 67979106 67979106 C A SLC12A4 Missense_Mutation p.R1019L 0.20 deleterious(0.02) possibly_damaging(0.483) TCGA-CD-A4MG-01 16 68853293 68853293 G A CDH1 Missense_Mutation p.S559N 0.35 tolerated(1) benign(0.004) TCGA-CD-A4MG-01 16 68877538 68877538 C A TANGO6 Silent p.A6A 0.14 TCGA-CD-A4MG-01 16 68936256 68936256 T C TANGO6 Missense_Mutation p.W506R 0.31 deleterious(0) probably_damaging(0.979) TCGA-CD-A4MG-01 16 69402283 69402283 C T TERF2 Missense_Mutation p.A273T 0.18 tolerated(0.61) benign(0.002) TCGA-CD-A4MG-01 16 69752129 69752129 T G NQO1 Missense_Mutation p.Q67P 0.23 tolerated(0.15) possibly_damaging(0.594) TCGA-CD-A4MG-01 16 69973863 69973864 - C WWP2 3'UTR 0.24 TCGA-CD-A4MG-01 16 70211270 70211270 G A CLEC18C Missense_Mutation p.A115T 0.29 tolerated(0.47) benign(0.003) TCGA-CD-A4MG-01 16 70219848 70219849 - A CLEC18C Frame_Shift_Ins p.T426Nfs*52 0.10 TCGA-CD-A4MG-01 16 70294991 70294991 C T AARS Missense_Mutation p.G581S 0.34 deleterious(0) probably_damaging(0.982) TCGA-CD-A4MG-01 16 70428933 70428933 C T ST3GAL2 Missense_Mutation p.R162Q 0.31 benign(0.124) TCGA-CD-A4MG-01 16 70698263 70698263 T C MTSS1L Missense_Mutation p.S521G 0.28 deleterious(0.02) benign(0.427) TCGA-CD-A4MG-01 16 71898146 71898146 C A ZNF821 Splice_Site p.X105_splice 0.22 TCGA-CD-A4MG-01 16 72821566 72821566 C T ZFHX3 Missense_Mutation p.A3537T 0.06 unknown(0) TCGA-CD-A4MG-01 16 72829504 72829504 C T ZFHX3 Silent p.G2359G 0.24 TCGA-CD-A4MG-01 16 72831705 72831705 C T ZFHX3 Missense_Mutation p.A1626T 0.22 probably_damaging(0.989) TCGA-CD-A4MG-01 16 75149237 75149237 C T LDHD Silent p.R62R 0.08 TCGA-CD-A4MG-01 16 75203207 75203207 G A ZFP1 Missense_Mutation p.A67T 0.24 tolerated(0.47) benign(0.001) TCGA-CD-A4MG-01 16 774503 774503 C T CCDC78 Missense_Mutation p.A258T 0.35 tolerated(0.27) benign(0.017) TCGA-CD-A4MG-01 16 780637 780637 C T NARFL Missense_Mutation p.G404D 0.22 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MG-01 16 78198170 78198170 G A WWOX Missense_Mutation p.R167H 0.28 tolerated(0.13) benign(0.023) TCGA-CD-A4MG-01 16 81075942 81075942 G A ATMIN Silent p.S173S 0.35 TCGA-CD-A4MG-01 16 81388220 81388220 A G GAN Missense_Mutation p.S165G 0.20 tolerated(0.07) benign(0.037) TCGA-CD-A4MG-01 16 84103636 84103636 T - MBTPS1 Frame_Shift_Del p.N597Mfs*9 0.13 TCGA-CD-A4MG-01 16 85946833 85946833 C T IRF8 Missense_Mutation p.P182S 0.11 tolerated(0.33) benign(0.002) TCGA-CD-A4MG-01 16 86613394 86613394 C T FOXL1 3'UTR 0.26 TCGA-CD-A4MG-01 16 87969966 87969966 C G CA5A Missense_Mutation p.G31R 0.26 tolerated(0.15) benign(0.001) TCGA-CD-A4MG-01 16 88643661 88643661 A G ZC3H18 Missense_Mutation p.R44G 0.23 deleterious_low_confidence(0) unknown(0) TCGA-CD-A4MG-01 16 88675395 88675395 G A ZC3H18 Missense_Mutation p.R381H 0.14 deleterious_low_confidence(0.01) unknown(0) TCGA-CD-A4MG-01 16 88871997 88871997 C T CDT1 Missense_Mutation p.T213M 0.25 deleterious(0) probably_damaging(0.951) TCGA-CD-A4MG-01 16 89293211 89293211 G A ZNF778 Missense_Mutation p.S144N 0.22 tolerated(0.07) possibly_damaging(0.541) TCGA-CD-A4MG-01 16 89293704 89293704 C A ZNF778 Silent p.P308P 0.17 TCGA-CD-A4MG-01 16 89348269 89348269 G T ANKRD11 Missense_Mutation p.P1561T 0.11 benign(0.005) TCGA-CD-A4MG-01 16 89350090 89350090 C T ANKRD11 Missense_Mutation p.A954T 0.08 benign(0.001) TCGA-CD-A4MG-01 16 89357036 89357036 C T ANKRD11 Missense_Mutation p.A200T 0.36 probably_damaging(0.973) TCGA-CD-A4MG-01 16 89703696 89703696 C T DPEP1 Silent p.L226L 0.27 TCGA-CD-A4MG-01 16 89977610 89977610 C T TCF25 Silent p.H665H 0.23 TCGA-CD-A4MG-01 17 10299956 10299956 C T MYH8 Missense_Mutation p.S1481N 0.27 tolerated(0.06) benign(0.015) TCGA-CD-A4MG-01 17 10355562 10355562 C T MYH4 Missense_Mutation p.R1145Q 0.21 tolerated(0.13) benign(0.018) TCGA-CD-A4MG-01 17 10363367 10363367 G T MYH4 Missense_Mutation p.L440M 0.21 tolerated(0.08) probably_damaging(0.979) TCGA-CD-A4MG-01 17 10370094 10370094 A G MYH4 5'UTR 0.30 TCGA-CD-A4MG-01 17 10546157 10546157 C T MYH3 Missense_Mutation p.E523K 0.28 deleterious(0.03) benign(0.44) TCGA-CD-A4MG-01 17 14205042 14205042 C T HS3ST3B1 Silent p.R69R 0.23 TCGA-CD-A4MG-01 17 15502061 15502061 G A CDRT1 Intron 0.31 TCGA-CD-A4MG-01 17 1686367 1686367 G A SMYD4 Silent p.G741G 0.24 TCGA-CD-A4MG-01 17 17046886 17046886 C - MPRIP Frame_Shift_Del p.P353Qfs*30 0.38 TCGA-CD-A4MG-01 17 17061916 17061916 G A MPRIP Missense_Mutation p.R549H 0.21 deleterious(0) probably_damaging(0.988) TCGA-CD-A4MG-01 17 17698232 17698232 C T RAI1 Missense_Mutation p.A657V 0.31 tolerated(0.06) benign(0.002) TCGA-CD-A4MG-01 17 17698653 17698653 C - RAI1 Frame_Shift_Del p.P799Lfs*20 0.22 TCGA-CD-A4MG-01 17 17722388 17722388 C T SREBF1 Missense_Mutation p.R366H 0.33 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 17 18043861 18043861 C A MYO15A Missense_Mutation p.P1748T 0.32 unknown(0) TCGA-CD-A4MG-01 17 18156768 18156768 G A FLII Missense_Mutation p.A287V 0.19 deleterious(0.03) possibly_damaging(0.525) TCGA-CD-A4MG-01 17 18832189 18832189 A G PRPSAP2 Silent p.A290A 0.11 TCGA-CD-A4MG-01 17 19645402 19645402 T C ALDH3A1 Missense_Mutation p.K202E 0.10 tolerated(0.06) benign(0.15) TCGA-CD-A4MG-01 17 1985165 1985165 G A SMG6 Missense_Mutation p.A1207V 0.11 tolerated(0.05) probably_damaging(0.926) TCGA-CD-A4MG-01 17 20140222 20140222 C A SPECC1 Intron 0.25 TCGA-CD-A4MG-01 17 21826269 21826269 G A FAM27L RNA 0.14 TCGA-CD-A4MG-01 17 2186003 2186003 C A SMG6 Missense_Mutation p.G867C 0.32 deleterious(0) probably_damaging(0.998) TCGA-CD-A4MG-01 17 2280072 2280072 C T SGSM2 Silent p.C885C 0.06 TCGA-CD-A4MG-01 17 25909933 25909933 C - KSR1 Frame_Shift_Del p.R126Vfs*21 0.27 TCGA-CD-A4MG-01 17 2601713 2601713 C - CLUH Frame_Shift_Del p.D442Tfs*12 0.15 TCGA-CD-A4MG-01 17 2601770 2601770 T C CLUH Missense_Mutation p.N423D 0.27 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 17 26370248 26370248 G A NLK Missense_Mutation p.A117T 0.17 tolerated(0.39) benign(0.068) TCGA-CD-A4MG-01 17 26906497 26906497 G T SPAG5 Missense_Mutation p.P964Q 0.25 tolerated(0.05) probably_damaging(0.956) TCGA-CD-A4MG-01 17 26966334 26966334 T - KIAA0100 Frame_Shift_Del p.R410Efs*56 0.23 TCGA-CD-A4MG-01 17 27013703 27013703 C T SUPT6H Missense_Mutation p.R866C 0.09 deleterious(0.02) benign(0.32) TCGA-CD-A4MG-01 17 27043061 27043061 C A RAB34 Missense_Mutation p.K111N 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-CD-A4MG-01 17 27234620 27234620 T C PHF12 Missense_Mutation p.I843M 0.37 deleterious(0) possibly_damaging(0.873) TCGA-CD-A4MG-01 17 27957940 27957940 G A SSH2 Silent p.H1397H 0.27 TCGA-CD-A4MG-01 17 27963136 27963136 C A SSH2 Missense_Mutation p.E677D 0.10 tolerated_low_confidence(0.12) benign(0.063) TCGA-CD-A4MG-01 17 28382913 28382913 A - EFCAB5 Frame_Shift_Del p.K736Rfs*16 0.15 TCGA-CD-A4MG-01 17 28601209 28601209 G A BLMH Nonsense_Mutation p.R218* 0.22 TCGA-CD-A4MG-01 17 28772965 28772965 C A CPD Missense_Mutation p.H934N 0.35 deleterious(0.01) benign(0.248) TCGA-CD-A4MG-01 17 28791832 28791832 A - CPD Frame_Shift_Del 0.18 TCGA-CD-A4MG-01 17 29161690 29161690 C A ATAD5 Silent p.T197T 0.25 TCGA-CD-A4MG-01 17 29592335 29592336 - T NF1 Frame_Shift_Ins p.Y1607Lfs*15 0.20 TCGA-CD-A4MG-01 17 29654857 29654857 G A NF1 Missense_Mutation p.R1870Q 0.17 deleterious(0) probably_damaging(0.945) TCGA-CD-A4MG-01 17 30980865 30980865 C T MYO1D Missense_Mutation p.R864H 0.17 tolerated(0.12) benign(0.094) TCGA-CD-A4MG-01 17 3119158 3119158 C T OR1A1 Silent p.L82L 0.28 TCGA-CD-A4MG-01 17 32955600 32955600 T C TMEM132E Silent p.G249G 0.34 TCGA-CD-A4MG-01 17 33460365 33460365 G A NLE1 Missense_Mutation p.A456V 0.19 deleterious(0.01) possibly_damaging(0.473) TCGA-CD-A4MG-01 17 33496901 33496901 A G UNC45B Missense_Mutation p.R500G 0.19 deleterious(0) possibly_damaging(0.573) TCGA-CD-A4MG-01 17 33767971 33767971 A G SLFN13 Silent p.I779I 0.38 TCGA-CD-A4MG-01 17 33802054 33802054 A G SLFN12L Missense_Mutation p.L552S 0.31 deleterious(0) probably_damaging(0.994) TCGA-CD-A4MG-01 17 34068074 34068074 C T RASL10B Missense_Mutation p.T121M 0.22 deleterious(0.03) benign(0.323) TCGA-CD-A4MG-01 17 34871799 34871799 G T MYO19 Missense_Mutation p.A150D 0.21 deleterious(0) probably_damaging(0.969) TCGA-CD-A4MG-01 17 35307639 35307639 G A AATF Missense_Mutation p.G73S 0.22 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 17 35620760 35620760 A G ACACA Missense_Mutation p.M386T 0.08 deleterious(0) probably_damaging(0.943) TCGA-CD-A4MG-01 17 36499264 36499264 C T GPR179 Missense_Mutation p.V137M 0.34 tolerated(0.07) benign(0.053) TCGA-CD-A4MG-01 17 36705305 36705305 G A SRCIN1 Missense_Mutation p.S1035L 0.31 deleterious(0.01) benign(0.172) TCGA-CD-A4MG-01 17 37009328 37009328 C T RPL23 Missense_Mutation p.R15Q 0.22 deleterious(0.05) benign(0.01) TCGA-CD-A4MG-01 17 37341052 37341052 C T CACNB1 Silent p.S238S 0.32 TCGA-CD-A4MG-01 17 37762007 37762007 G A NEUROD2 Silent p.G282G 0.40 TCGA-CD-A4MG-01 17 37900454 37900454 C A GRB7 Silent p.T288T 0.14 TCGA-CD-A4MG-01 17 37922387 37922387 G A IKZF3 Missense_Mutation p.R396C 0.22 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MG-01 17 3844376 3844376 G A ATP2A3 Silent p.P663P 0.28 TCGA-CD-A4MG-01 17 38546381 38546381 T - TOP2A Frame_Shift_Del p.R1435Gfs*13 0.22 TCGA-CD-A4MG-01 17 39305582 39305582 G A KRTAP4-5 Silent p.C146C 0.13 TCGA-CD-A4MG-01 17 40173563 40173563 C T NKIRAS2 Intron 0.13 TCGA-CD-A4MG-01 17 40327731 40327731 T C KCNH4 Missense_Mutation p.T285A 0.25 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 17 40914762 40914762 C - RAMP2 Frame_Shift_Del p.P142Qfs*8 0.26 TCGA-CD-A4MG-01 17 41001152 41001152 T G AOC2 Silent p.A546A 0.33 TCGA-CD-A4MG-01 17 41020737 41020737 A G AOC4P RNA 0.18 TCGA-CD-A4MG-01 17 41219626 41219626 T G BRCA1 Silent p.T1712T 0.23 TCGA-CD-A4MG-01 17 41570312 41570312 G A DHX8 Missense_Mutation p.R256H 0.10 tolerated(0.09) benign(0.011) TCGA-CD-A4MG-01 17 42275016 42275016 C T ATXN7L3 Missense_Mutation p.C45Y 0.30 tolerated(0.19) possibly_damaging(0.574) TCGA-CD-A4MG-01 17 42942396 42942396 A C EFTUD2 Missense_Mutation p.L396R 0.37 deleterious(0) probably_damaging(0.961) TCGA-CD-A4MG-01 17 43318961 43318961 T C FMNL1 Silent p.D515D 0.56 TCGA-CD-A4MG-01 17 4351594 4351594 A G SPNS3 Missense_Mutation p.K256E 0.33 deleterious(0.01) possibly_damaging(0.659) TCGA-CD-A4MG-01 17 43531269 43531269 G A PLEKHM1 Missense_Mutation p.A650V 0.23 tolerated(0.37) benign(0.002) TCGA-CD-A4MG-01 17 44101592 44101592 A - MAPT 3'UTR 0.36 TCGA-CD-A4MG-01 17 44101592 44101592 A G MAPT 3'UTR 0.21 TCGA-CD-A4MG-01 17 4461360 4461360 C T GGT6 Missense_Mutation p.A478T 0.18 tolerated(0.09) benign(0.028) TCGA-CD-A4MG-01 17 45890696 45890696 G T OSBPL7 Missense_Mutation p.P558H 0.18 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 17 46629396 46629396 G - HOXB3 Frame_Shift_Del p.G148Afs*72 0.20 TCGA-CD-A4MG-01 17 4686165 4686165 A G TM4SF5 Missense_Mutation p.N138D 0.32 tolerated(0.67) benign(0.128) TCGA-CD-A4MG-01 17 47075284 47075284 T C IGF2BP1 Splice_Site p.X59_splice 0.10 TCGA-CD-A4MG-01 17 4713005 4713005 C T PLD2 Missense_Mutation p.R212C 0.26 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 17 47394555 47394555 T - ZNF652 Frame_Shift_Del p.K178Rfs*4 0.10 TCGA-CD-A4MG-01 17 47656635 47656635 T C NXPH3 Silent p.S244S 0.32 TCGA-CD-A4MG-01 17 4802326 4802326 C A CHRNE Missense_Mutation p.E432D 0.25 tolerated(0.12) benign(0.059) TCGA-CD-A4MG-01 17 4805098 4805098 C A C17orf107 3'UTR 0.19 TCGA-CD-A4MG-01 17 48272975 48272975 G A COL1A1 Missense_Mutation p.R370C 0.26 unknown(0) TCGA-CD-A4MG-01 17 48433967 48433967 C - XYLT2 Frame_Shift_Del p.G529Afs*78 0.39 TCGA-CD-A4MG-01 17 4846214 4846214 G A RNF167 Missense_Mutation p.A150T 0.25 tolerated(0.48) benign(0.009) TCGA-CD-A4MG-01 17 48474629 48474629 C T LRRC59 Missense_Mutation p.G17D 0.08 tolerated(0.09) benign(0.279) TCGA-CD-A4MG-01 17 48561838 48561838 G T RSAD1 Missense_Mutation p.W381C 0.19 tolerated(0.18) possibly_damaging(0.762) TCGA-CD-A4MG-01 17 48603347 48603347 G A MYCBPAP Missense_Mutation p.V673I 0.20 tolerated(0.28) benign(0.03) TCGA-CD-A4MG-01 17 48628211 48628211 T C SPATA20 Missense_Mutation p.L439P 0.32 tolerated(0.14) possibly_damaging(0.725) TCGA-CD-A4MG-01 17 4862826 4862826 C T SPAG7 3'UTR 0.09 TCGA-CD-A4MG-01 17 48696047 48696047 C T CACNA1G Missense_Mutation p.T1820I 0.24 tolerated(0.16) probably_damaging(0.995) TCGA-CD-A4MG-01 17 48704019 48704019 C - CACNA1G Frame_Shift_Del p.P2349Lfs*15 0.11 TCGA-CD-A4MG-01 17 4876900 4876900 G A CAMTA2 Silent p.I750I 0.15 TCGA-CD-A4MG-01 17 4908175 4908175 C T KIF1C Missense_Mutation p.R349C 0.32 deleterious(0) benign(0.34) TCGA-CD-A4MG-01 17 51902014 51902014 A - KIF2B Frame_Shift_Del p.K542Nfs*2 0.12 TCGA-CD-A4MG-01 17 530426 530427 - A VPS53 Frame_Shift_Ins p.C321Lfs*20 0.19 TCGA-CD-A4MG-01 17 54671923 54671923 G - NOG Frame_Shift_Del p.A115Pfs*9 0.31 TCGA-CD-A4MG-01 17 56663224 56663224 G A TEX14 Missense_Mutation p.T1009M 0.15 tolerated(0.65) benign(0.002) TCGA-CD-A4MG-01 17 56699126 56699126 A G TEX14 Missense_Mutation p.C147R 0.20 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MG-01 17 57292310 57292310 C T SMG8 Nonsense_Mutation p.Q975* 0.23 TCGA-CD-A4MG-01 17 59668209 59668209 G A NACA2 Silent p.V111V 0.06 TCGA-CD-A4MG-01 17 59949820 59949820 A G INTS2 Missense_Mutation p.C870R 0.47 deleterious(0) possibly_damaging(0.496) TCGA-CD-A4MG-01 17 60060188 60060188 G T MED13 Missense_Mutation p.P1059H 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-CD-A4MG-01 17 60087992 60087992 A - MED13 Frame_Shift_Del p.L629Yfs*23 0.31 TCGA-CD-A4MG-01 17 60757801 60757801 C T MRC2 Silent p.D820D 0.27 TCGA-CD-A4MG-01 17 61499114 61499114 G A TANC2 Missense_Mutation p.G1924E 0.09 tolerated_low_confidence(0.1) possibly_damaging(0.857) TCGA-CD-A4MG-01 17 61622452 61622452 G A KCNH6 Missense_Mutation p.V840M 0.32 tolerated(1) benign(0.002) TCGA-CD-A4MG-01 17 61767711 61767711 C T MAP3K3 Missense_Mutation p.T415M 0.31 deleterious(0) probably_damaging(0.998) TCGA-CD-A4MG-01 17 61899142 61899142 C T FTSJ3 Missense_Mutation p.V513I 0.34 tolerated(0.15) benign(0.008) TCGA-CD-A4MG-01 17 62290153 62290153 C T TEX2 Silent p.T475T 0.24 TCGA-CD-A4MG-01 17 62796366 62796366 G A PLEKHM1P RNA 0.21 TCGA-CD-A4MG-01 17 62856351 62856352 - T LRRC37A3 Frame_Shift_Ins p.Y1305Ifs*31 0.28 TCGA-CD-A4MG-01 17 63532585 63532585 C - AXIN2 Frame_Shift_Del p.G665Afs*24 0.08 TCGA-CD-A4MG-01 17 63554128 63554128 C - AXIN2 Frame_Shift_Del p.G204Efs*7 0.13 TCGA-CD-A4MG-01 17 6377759 6377759 C T PITPNM3 Silent p.G417G 0.10 TCGA-CD-A4MG-01 17 6381891 6381891 A C PITPNM3 Silent p.S251S 0.33 TCGA-CD-A4MG-01 17 6531467 6531467 T C KIAA0753 Missense_Mutation p.I230V 0.14 tolerated(0.59) probably_damaging(0.953) TCGA-CD-A4MG-01 17 66246996 66246996 T C AMZ2 Silent p.C115C 0.40 TCGA-CD-A4MG-01 17 66880477 66880477 G A ABCA8 Silent p.L1164L 0.27 TCGA-CD-A4MG-01 17 6927479 6927479 C T BCL6B Missense_Mutation p.A86V 0.31 tolerated(0.06) possibly_damaging(0.487) TCGA-CD-A4MG-01 17 6929846 6929846 T C BCL6B Silent p.V320V 0.36 TCGA-CD-A4MG-01 17 7077550 7077550 C T ASGR1 Nonsense_Mutation p.W167* 0.16 TCGA-CD-A4MG-01 17 708348 708348 G A NXN Silent p.A320A 0.43 TCGA-CD-A4MG-01 17 7163530 7163530 C - CLDN7 3'UTR 0.50 TCGA-CD-A4MG-01 17 7225044 7225044 T C NEURL4 Silent p.L978L 0.40 TCGA-CD-A4MG-01 17 722696 722696 C T NXN Missense_Mutation p.R268Q 0.45 tolerated(0.13) possibly_damaging(0.878) TCGA-CD-A4MG-01 17 72308264 72308264 A G DNAI2 Silent p.V539V 0.32 TCGA-CD-A4MG-01 17 72769713 72769713 A G NAT9 Splice_Site p.X64_splice 0.25 TCGA-CD-A4MG-01 17 72832269 72832269 G A TMEM104 Missense_Mutation p.V312M 0.26 tolerated(0.08) benign(0.036) TCGA-CD-A4MG-01 17 72888695 72888695 G A FADS6 Silent p.T104T 0.40 TCGA-CD-A4MG-01 17 72956180 72956180 T C HID1 Missense_Mutation p.S298G 0.28 tolerated(0.29) benign(0.099) TCGA-CD-A4MG-01 17 73125138 73125138 T C ARMC7 3'UTR 0.28 TCGA-CD-A4MG-01 17 7320492 7320492 C T NLGN2 Missense_Mutation p.R628C 0.21 deleterious(0.01) benign(0.424) TCGA-CD-A4MG-01 17 73258438 73258440 TTG - MRPS7 Intron 0.29 TCGA-CD-A4MG-01 17 73491063 73491063 C - KIAA0195 Frame_Shift_Del p.S895Pfs*13 0.32 TCGA-CD-A4MG-01 17 73952007 73952007 G A ACOX1 Missense_Mutation p.A187V 0.21 deleterious(0.02) possibly_damaging(0.467) TCGA-CD-A4MG-01 17 74005049 74005049 G A EVPL Missense_Mutation p.R1413W 0.39 deleterious(0) benign(0.386) TCGA-CD-A4MG-01 17 74005310 74005310 G A EVPL Silent p.L1326L 0.15 TCGA-CD-A4MG-01 17 7412441 7412441 A C POLR2A Missense_Mutation p.E1215A 0.20 probably_damaging(0.998) TCGA-CD-A4MG-01 17 74625401 74625401 G A ST6GALNAC1 Missense_Mutation p.T175M 0.26 benign(0.022) TCGA-CD-A4MG-01 17 75189625 75189626 - A SEC14L1 Frame_Shift_Ins p.G159Rfs*62 0.21 TCGA-CD-A4MG-01 17 7557199 7557199 T C ATP1B2 Silent p.I94I 0.34 TCGA-CD-A4MG-01 17 7592173 7592173 G - WRAP53 Frame_Shift_Del p.D71Tfs*19 0.14 TCGA-CD-A4MG-01 17 76122898 76122898 C T TMC6 Missense_Mutation p.A6T 0.25 tolerated(0.3) benign(0.005) TCGA-CD-A4MG-01 17 7626991 7626991 A T DNAH2 Missense_Mutation p.E71V 0.11 benign(0.03) TCGA-CD-A4MG-01 17 76388607 76388607 T C PGS1 Missense_Mutation p.V65A 0.08 tolerated_low_confidence(0.12) benign(0.001) TCGA-CD-A4MG-01 17 76420019 76420019 G A DNAH17 Silent p.L4476L 0.21 TCGA-CD-A4MG-01 17 76533441 76533441 G A DNAH17 Silent p.N933N 0.53 TCGA-CD-A4MG-01 17 7663182 7663183 TC - DNAH2 Frame_Shift_Del p.S905Cfs*7 0.24 TCGA-CD-A4MG-01 17 7710878 7710878 G A DNAH2 Missense_Mutation p.A3235T 0.26 probably_damaging(0.966) TCGA-CD-A4MG-01 17 77808735 77808735 C T CBX4 Missense_Mutation p.A236T 0.26 tolerated(0.78) benign(0.001) TCGA-CD-A4MG-01 17 78282969 78282969 G A RNF213 Missense_Mutation p.V885M 0.23 benign(0.034) TCGA-CD-A4MG-01 17 78326534 78326534 T C RNF213 Intron 0.18 TCGA-CD-A4MG-01 17 79514605 79514605 C T C17orf70 Silent p.T501T 0.26 TCGA-CD-A4MG-01 17 79892208 79892208 C T PYCR1 Missense_Mutation p.R264H 0.10 deleterious(0) possibly_damaging(0.758) TCGA-CD-A4MG-01 17 79954570 79954570 C T ASPSCR1 Missense_Mutation p.P261S 0.19 tolerated(0.59) unknown(0) TCGA-CD-A4MG-01 17 79985901 79985901 A C LRRC45 Missense_Mutation p.E309A 0.23 deleterious(0) probably_damaging(0.994) TCGA-CD-A4MG-01 17 80037033 80037033 C T FASN Missense_Mutation p.V2508M 0.26 deleterious_low_confidence(0.01) benign(0.426) TCGA-CD-A4MG-01 17 80045016 80045016 T C FASN Missense_Mutation p.I1113V 0.20 tolerated(0.61) benign(0) TCGA-CD-A4MG-01 17 80051506 80051506 G A FASN Missense_Mutation p.A141V 0.12 deleterious(0) probably_damaging(0.997) TCGA-CD-A4MG-01 17 80196992 80196993 GT - SLC16A3 3'UTR 0.25 TCGA-CD-A4MG-01 17 80332577 80332577 T G UTS2R Missense_Mutation p.L126R 0.44 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 17 80402342 80402342 C T C17orf62 Missense_Mutation p.A142T 0.23 tolerated(0.08) benign(0.035) TCGA-CD-A4MG-01 17 80882895 80882895 G A TBCD Missense_Mutation p.A781T 0.36 tolerated(0.08) benign(0.087) TCGA-CD-A4MG-01 17 80885161 80885161 C T TBCD Silent p.D857D 0.12 TCGA-CD-A4MG-01 17 8108544 8108544 C T AURKB Missense_Mutation p.R284H 0.23 deleterious(0.01) possibly_damaging(0.555) TCGA-CD-A4MG-01 17 9460769 9460769 G A STX8 Missense_Mutation p.A65V 0.14 deleterious(0.02) probably_damaging(0.935) TCGA-CD-A4MG-01 17 9631302 9631302 C T USP43 Silent p.G789G 0.27 TCGA-CD-A4MG-01 17 9850287 9850287 G A GAS7 Missense_Mutation p.T180M 0.14 deleterious(0) probably_damaging(0.964) TCGA-CD-A4MG-01 18 10487648 10487648 C T APCDD1 Silent p.N386N 0.30 TCGA-CD-A4MG-01 18 10696429 10696429 C A PIEZO2 Silent p.V2199V 0.09 TCGA-CD-A4MG-01 18 12493099 12493099 T C SPIRE1 Silent p.S387S 0.19 TCGA-CD-A4MG-01 18 13746253 13746253 A - RNMT Frame_Shift_Del p.T394Hfs*19 0.31 TCGA-CD-A4MG-01 18 14179529 14179529 G A ANKRD20A5P RNA 0.08 TCGA-CD-A4MG-01 18 14179568 14179568 G T ANKRD20A5P RNA 0.09 TCGA-CD-A4MG-01 18 21364090 21364090 C T LAMA3 Silent p.R524R 0.23 TCGA-CD-A4MG-01 18 25565659 25565659 G T CDH2 Missense_Mutation p.P603H 0.37 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MG-01 18 2688392 2688392 T C SMCHD1 Silent p.S213S 0.31 TCGA-CD-A4MG-01 18 29207063 29207063 A - B4GALT6 Frame_Shift_Del p.F266Lfs*4 0.24 TCGA-CD-A4MG-01 18 29340605 29340605 T C SLC25A52 Missense_Mutation p.H17R 0.17 deleterious_low_confidence(0.04) benign(0.299) TCGA-CD-A4MG-01 18 33554884 33554884 G A C18orf21 Silent p.T42T 0.31 TCGA-CD-A4MG-01 18 33779931 33779931 G A MOCOS Silent p.P195P 0.29 TCGA-CD-A4MG-01 18 34205516 34205516 C - FHOD3 Frame_Shift_Del p.S336Vfs*138 0.20 TCGA-CD-A4MG-01 18 34327049 34327049 G A FHOD3 Missense_Mutation p.A1220T 0.08 tolerated(0.32) benign(0.234) TCGA-CD-A4MG-01 18 34833874 34833874 C T CELF4 Missense_Mutation p.S454N 0.34 deleterious(0) possibly_damaging(0.886) TCGA-CD-A4MG-01 18 3729292 3729292 C T DLGAP1 Silent p.A478A 0.31 TCGA-CD-A4MG-01 18 42449192 42449192 C T SETBP1 Intron 0.17 TCGA-CD-A4MG-01 18 42532291 42532291 G A SETBP1 Missense_Mutation p.V996M 0.20 tolerated(0.27) probably_damaging(0.998) TCGA-CD-A4MG-01 18 42643099 42643099 C T SETBP1 Silent p.C1409C 0.33 TCGA-CD-A4MG-01 18 42643635 42643635 G A SETBP1 Missense_Mutation p.R1588Q 0.27 deleterious_low_confidence(0) benign(0.396) TCGA-CD-A4MG-01 18 43496007 43496007 G A EPG5 Silent p.D1183D 0.36 TCGA-CD-A4MG-01 18 44260090 44260090 G C ST8SIA5 Missense_Mutation p.A349G 0.07 probably_damaging(0.92) TCGA-CD-A4MG-01 18 44260313 44260313 A G ST8SIA5 Missense_Mutation p.Y275H 0.11 probably_damaging(0.982) TCGA-CD-A4MG-01 18 44559729 44559729 C T TCEB3B Missense_Mutation p.G636D 0.07 tolerated(0.05) benign(0.305) TCGA-CD-A4MG-01 18 45566744 45566744 T C ZBTB7C Silent p.R245R 0.24 TCGA-CD-A4MG-01 18 45567049 45567049 C T ZBTB7C Missense_Mutation p.D144N 0.29 tolerated(0.07) benign(0.091) TCGA-CD-A4MG-01 18 45567076 45567076 C - ZBTB7C Frame_Shift_Del p.E135Rfs*87 0.36 TCGA-CD-A4MG-01 18 47311636 47311636 G A ACAA2 Missense_Mutation p.A347V 0.13 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MG-01 18 47800077 47800077 T C MBD1 Missense_Mutation p.T435A 0.24 tolerated(1) benign(0.001) TCGA-CD-A4MG-01 18 48510941 48510941 T - ELAC1 Intron 0.17 TCGA-CD-A4MG-01 18 56246569 56246569 G A ALPK2 Missense_Mutation p.A480V 0.07 tolerated(0.07) benign(0.175) TCGA-CD-A4MG-01 18 56586759 56586759 G A ZNF532 Missense_Mutation p.A414T 0.12 tolerated(0.23) benign(0.004) TCGA-CD-A4MG-01 18 59157849 59157849 C T CDH20 Silent p.Y21Y 0.26 TCGA-CD-A4MG-01 18 61460422 61460423 - T SERPINB7 Frame_Shift_Ins p.S85Ffs*2 0.11 TCGA-CD-A4MG-01 18 61585320 61585320 C T SERPINB10 Missense_Mutation p.T119M 0.15 deleterious(0) probably_damaging(0.989) TCGA-CD-A4MG-01 18 65180259 65180259 A G DSEL Silent p.T539T 0.29 TCGA-CD-A4MG-01 18 67068445 67068445 C T DOK6 5'UTR 0.38 TCGA-CD-A4MG-01 18 67817853 67817853 G A RTTN Silent p.P682P 0.24 TCGA-CD-A4MG-01 18 6947161 6947161 C T LAMA1 Splice_Site p.X2948_splice 0.19 TCGA-CD-A4MG-01 18 7016544 7016544 T - LAMA1 Frame_Shift_Del p.R979Gfs*45 0.20 TCGA-CD-A4MG-01 18 70209282 70209282 C T CBLN2 Silent p.L38L 0.38 TCGA-CD-A4MG-01 18 72228205 72228205 C T CNDP1 Missense_Mutation p.R140W 0.12 deleterious(0.03) possibly_damaging(0.668) TCGA-CD-A4MG-01 18 72344625 72344625 C A ZNF407 Nonsense_Mutation p.C550* 0.23 TCGA-CD-A4MG-01 18 73139530 73139530 G A SMIM21 5'UTR 0.26 TCGA-CD-A4MG-01 18 76753102 76753102 G A SALL3 Missense_Mutation p.V371I 0.27 deleterious(0.05) probably_damaging(0.99) TCGA-CD-A4MG-01 18 77659290 77659290 C T KCNG2 Missense_Mutation p.A292V 0.38 tolerated(0.06) probably_damaging(0.933) TCGA-CD-A4MG-01 18 77659487 77659487 G A KCNG2 Missense_Mutation p.A358T 0.28 deleterious(0.04) benign(0.055) TCGA-CD-A4MG-01 18 77659546 77659546 G A KCNG2 Silent p.P377P 0.25 TCGA-CD-A4MG-01 18 9254421 9254421 C T ANKRD12 Nonsense_Mutation p.R386* 0.25 TCGA-CD-A4MG-01 18 9562041 9562041 G A PPP4R1 Silent p.S593S 0.21 TCGA-CD-A4MG-01 19 10116619 10116619 C T COL5A3 Missense_Mutation p.R97Q 0.27 unknown(0) TCGA-CD-A4MG-01 19 10403761 10403761 G A ICAM5 Missense_Mutation p.G435E 0.35 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 19 10403790 10403790 C T ICAM5 Missense_Mutation p.R445C 0.41 deleterious(0) probably_damaging(0.995) TCGA-CD-A4MG-01 19 10405119 10405119 C T ICAM5 Missense_Mutation p.T678M 0.08 deleterious(0.03) probably_damaging(0.976) TCGA-CD-A4MG-01 19 1041564 1041564 C T ABCA7 Missense_Mutation p.A41V 0.09 tolerated(0.27) benign(0.327) TCGA-CD-A4MG-01 19 10434093 10434093 G - RAVER1 Frame_Shift_Del p.G320Afs*204 0.35 TCGA-CD-A4MG-01 19 10467270 10467270 C T TYK2 Missense_Mutation p.R864H 0.19 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 19 10506876 10506876 G A CDC37 Missense_Mutation p.R36W 0.31 deleterious(0) probably_damaging(0.985) TCGA-CD-A4MG-01 19 10602938 10602938 C T KEAP1 Missense_Mutation p.V214M 0.09 deleterious(0) probably_damaging(0.978) TCGA-CD-A4MG-01 19 10670333 10670333 G A KRI1 Missense_Mutation p.R333C 0.18 deleterious(0.01) probably_damaging(0.987) TCGA-CD-A4MG-01 19 11132481 11132481 G A SMARCA4 Silent p.T899T 0.26 TCGA-CD-A4MG-01 19 1123586 1123586 T G SBNO2 Missense_Mutation p.E192A 0.20 deleterious(0) benign(0.08) TCGA-CD-A4MG-01 19 11304231 11304231 G T KANK2 Silent p.S175S 0.28 TCGA-CD-A4MG-01 19 11352750 11352750 G A DOCK6 Silent p.R538R 0.39 TCGA-CD-A4MG-01 19 11505147 11505147 G A RGL3 Silent p.V694V 0.24 TCGA-CD-A4MG-01 19 12739501 12739502 - A ZNF791 Frame_Shift_Ins p.C389Mfs*25 0.22 TCGA-CD-A4MG-01 19 12761026 12761026 A G MAN2B1 Missense_Mutation p.V686A 0.08 deleterious(0) probably_damaging(0.973) TCGA-CD-A4MG-01 19 12876754 12876754 C - HOOK2 Frame_Shift_Del p.G529Afs*11 0.20 TCGA-CD-A4MG-01 19 13249171 13249171 C T NACC1 Missense_Mutation p.T512I 0.16 deleterious_low_confidence(0.05) benign(0.107) TCGA-CD-A4MG-01 19 13616881 13616881 G A CACNA1A Missense_Mutation p.A53V 0.16 possibly_damaging(0.695) TCGA-CD-A4MG-01 19 1468460 1468460 C T APC2 Silent p.F1720F 0.25 TCGA-CD-A4MG-01 19 15164693 15164693 C T CASP14 Silent p.F109F 0.37 TCGA-CD-A4MG-01 19 15221519 15221519 T G SYDE1 Silent p.V421V 0.18 TCGA-CD-A4MG-01 19 15234194 15234194 C T ILVBL Missense_Mutation p.R110H 0.21 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 19 15291822 15291822 G A NOTCH3 Missense_Mutation p.P982S 0.55 deleterious(0.05) benign(0.004) TCGA-CD-A4MG-01 19 15752234 15752234 G A CYP4F3 Silent p.Q3Q 0.30 TCGA-CD-A4MG-01 19 1578404 1578404 C T MBD3 Missense_Mutation p.D271N 0.21 tolerated_low_confidence(0.16) possibly_damaging(0.555) TCGA-CD-A4MG-01 19 15852474 15852474 G A OR10H3 Missense_Mutation p.R91H 0.28 tolerated(0.39) benign(0.001) TCGA-CD-A4MG-01 19 16314384 16314384 G - AP1M1 Frame_Shift_Del p.V55Sfs*194 0.24 TCGA-CD-A4MG-01 19 16689204 16689204 G A MED26 Missense_Mutation p.A30V 0.38 tolerated(0.6) benign(0.26) TCGA-CD-A4MG-01 19 16860051 16860051 C A NWD1 Missense_Mutation p.L200I 0.35 tolerated(0.12) probably_damaging(0.923) TCGA-CD-A4MG-01 19 16980660 16980660 G A SIN3B Silent p.P764P 0.40 TCGA-CD-A4MG-01 19 17000890 17000890 G A F2RL3 Missense_Mutation p.A206T 0.27 tolerated(0.51) benign(0.042) TCGA-CD-A4MG-01 19 17343154 17343154 G A NR2F6 3'UTR 0.25 TCGA-CD-A4MG-01 19 17611627 17611627 C T SLC27A1 Silent p.G526G 0.09 TCGA-CD-A4MG-01 19 17973433 17973433 C T RPL18A Intron 0.07 TCGA-CD-A4MG-01 19 18280056 18280056 G A PIK3R2 Silent p.A713A 0.21 TCGA-CD-A4MG-01 19 18547246 18547246 G A ISYNA1 Missense_Mutation p.A218V 0.10 deleterious(0.01) benign(0.108) TCGA-CD-A4MG-01 19 18703042 18703042 G A C19orf60 3'UTR 0.32 TCGA-CD-A4MG-01 19 19349146 19349146 C T NCAN Missense_Mutation p.A1112V 0.10 deleterious(0) probably_damaging(0.935) TCGA-CD-A4MG-01 19 19379477 19379477 T C TM6SF2 Missense_Mutation p.S191G 0.23 tolerated(0.11) benign(0.034) TCGA-CD-A4MG-01 19 19612199 19612199 G A GATAD2A Missense_Mutation p.A492T 0.24 tolerated(0.3) benign(0.001) TCGA-CD-A4MG-01 19 19652013 19652013 C T CILP2 Missense_Mutation p.R184C 0.29 deleterious(0.05) probably_damaging(0.912) TCGA-CD-A4MG-01 19 1969934 1969934 G T CSNK1G2 Missense_Mutation p.G55C 0.26 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 19 20116856 20116856 T - ZNF682 Frame_Shift_Del p.K485Nfs*19 0.11 TCGA-CD-A4MG-01 19 2046621 2046621 G A MKNK2 Nonsense_Mutation p.Q41* 0.40 TCGA-CD-A4MG-01 19 2191017 2191017 G T DOT1L Missense_Mutation p.G91C 0.35 deleterious(0.01) probably_damaging(0.997) TCGA-CD-A4MG-01 19 22154770 22154770 A C ZNF208 Missense_Mutation p.I1022M 0.19 deleterious(0.01) possibly_damaging(0.537) TCGA-CD-A4MG-01 19 22155401 22155401 T G ZNF208 Missense_Mutation p.K812T 0.32 deleterious(0.01) unknown(0) TCGA-CD-A4MG-01 19 2247960 2247960 G A SF3A2 Silent p.A270A 0.29 TCGA-CD-A4MG-01 19 2252760 2252760 C T JSRP1 Silent p.P188P 0.28 TCGA-CD-A4MG-01 19 2717813 2717813 C T AC006538.4 Missense_Mutation p.A91T 0.21 tolerated_low_confidence(0.17) unknown(0) TCGA-CD-A4MG-01 19 2733026 2733026 G A SLC39A3 Missense_Mutation p.A223V 0.28 tolerated(0.3) benign(0.049) TCGA-CD-A4MG-01 19 2934350 2934350 C T ZNF77 Missense_Mutation p.V259I 0.15 tolerated(0.5) benign(0.051) TCGA-CD-A4MG-01 19 3005872 3005872 A G TLE2 Missense_Mutation p.L532P 0.30 deleterious(0) probably_damaging(0.957) TCGA-CD-A4MG-01 19 30935465 30935465 G - ZNF536 Frame_Shift_Del p.G333Afs*60 0.27 TCGA-CD-A4MG-01 19 30936168 30936168 G A ZNF536 Missense_Mutation p.V567M 0.24 deleterious(0.05) benign(0.041) TCGA-CD-A4MG-01 19 3163135 3163135 G A GNA15 3'UTR 0.27 TCGA-CD-A4MG-01 19 3179875 3179875 G A S1PR4 Missense_Mutation p.R362H 0.30 deleterious(0.02) probably_damaging(0.98) TCGA-CD-A4MG-01 19 32844886 32844888 ATC - ZNF507 In_Frame_Del p.I385del 0.09 TCGA-CD-A4MG-01 19 33089060 33089060 G A ANKRD27 Silent p.S1048S 0.32 TCGA-CD-A4MG-01 19 33167775 33167775 C G RGS9BP Silent p.R202R 0.31 TCGA-CD-A4MG-01 19 33697631 33697631 G A LRP3 Missense_Mutation p.A573T 0.22 tolerated(0.13) possibly_damaging(0.474) TCGA-CD-A4MG-01 19 34830835 34830835 C T KIAA0355 Silent p.T475T 0.07 TCGA-CD-A4MG-01 19 34929578 34929578 C A UBA2 Missense_Mutation p.P163H 0.20 deleterious(0) probably_damaging(0.996) TCGA-CD-A4MG-01 19 34929589 34929589 C T UBA2 Nonsense_Mutation p.Q167* 0.09 TCGA-CD-A4MG-01 19 35504472 35504472 C T GRAMD1A Silent p.I249I 0.33 TCGA-CD-A4MG-01 19 35716084 35716084 G - FAM187B Frame_Shift_Del p.L252* 0.33 TCGA-CD-A4MG-01 19 3600080 3600080 G A TBXA2R Silent p.L185L 0.24 TCGA-CD-A4MG-01 19 36003673 36003673 C T DMKN Missense_Mutation p.G149D 0.41 deleterious(0) probably_damaging(0.998) TCGA-CD-A4MG-01 19 36046457 36046457 A G ATP4A Missense_Mutation p.L681P 0.10 deleterious(0) probably_damaging(0.99) TCGA-CD-A4MG-01 19 36047927 36047927 G A ATP4A Missense_Mutation p.A586V 0.35 deleterious(0.04) benign(0.182) TCGA-CD-A4MG-01 19 36113615 36113615 G A HAUS5 Silent p.L588L 0.25 TCGA-CD-A4MG-01 19 36113980 36113980 G A HAUS5 3'UTR 0.16 TCGA-CD-A4MG-01 19 36216189 36216189 C - KMT2B Frame_Shift_Del p.P1201Rfs*154 0.41 TCGA-CD-A4MG-01 19 36221296 36221296 C T KMT2B Silent p.F1710F 0.25 TCGA-CD-A4MG-01 19 36223002 36223002 G - KMT2B Frame_Shift_Del p.G1879Vfs*16 0.23 TCGA-CD-A4MG-01 19 36431360 36431360 G A LRFN3 Missense_Mutation p.A345T 0.34 tolerated(0.19) benign(0.107) TCGA-CD-A4MG-01 19 36564323 36564323 T A WDR62 Missense_Mutation p.S375T 0.29 tolerated(0.15) possibly_damaging(0.551) TCGA-CD-A4MG-01 19 36595902 36595902 C T WDR62 Missense_Mutation p.A1515V 0.27 tolerated_low_confidence(0.11) possibly_damaging(0.661) TCGA-CD-A4MG-01 19 37677527 37677527 G A ZNF585B Silent p.G304G 0.13 TCGA-CD-A4MG-01 19 38104037 38104037 A C ZNF540 Missense_Mutation p.N619T 0.32 tolerated(0.61) benign(0.038) TCGA-CD-A4MG-01 19 3819150 3819150 C A ZFR2 Silent p.L608L 0.10 TCGA-CD-A4MG-01 19 38742041 38742041 G A PPP1R14A Nonsense_Mutation p.Q121* 0.31 TCGA-CD-A4MG-01 19 38882863 38882863 C T SPRED3 Missense_Mutation p.P120S 0.35 tolerated(1) benign(0.007) TCGA-CD-A4MG-01 19 38959605 38959605 G T RYR1 Splice_Site p.X1128_splice 0.29 TCGA-CD-A4MG-01 19 38985019 38985021 TGG - RYR1 In_Frame_Del p.V2103del 0.24 TCGA-CD-A4MG-01 19 38985048 38985048 G A RYR1 Missense_Mutation p.V2111M 0.33 benign(0.094) TCGA-CD-A4MG-01 19 38987086 38987086 G A RYR1 Missense_Mutation p.R2234H 0.11 possibly_damaging(0.766) TCGA-CD-A4MG-01 19 39230725 39230725 A C CAPN12 Missense_Mutation p.L232R 0.22 deleterious(0) probably_damaging(0.998) TCGA-CD-A4MG-01 19 39303125 39303125 A G LGALS4 Missense_Mutation p.L27P 0.22 deleterious(0.02) probably_damaging(1) TCGA-CD-A4MG-01 19 39359891 39359891 G T RINL Missense_Mutation p.A545D 0.29 tolerated(0.22) benign(0.02) TCGA-CD-A4MG-01 19 39374291 39374291 C T SIRT2 Missense_Mutation p.E203K 0.31 tolerated(0.24) benign(0.037) TCGA-CD-A4MG-01 19 39860748 39860748 G T SAMD4B Missense_Mutation p.G217V 0.28 tolerated(0.08) probably_damaging(0.963) TCGA-CD-A4MG-01 19 39871333 39871333 G A SAMD4B Missense_Mutation p.G586S 0.20 tolerated(0.31) benign(0.003) TCGA-CD-A4MG-01 19 39978787 39978787 C A TIMM50 Silent p.G364G 0.31 TCGA-CD-A4MG-01 19 39998572 39998572 C - DLL3 Frame_Shift_Del p.P594Rfs*24 0.22 TCGA-CD-A4MG-01 19 40317948 40317948 G A DYRK1B Nonsense_Mutation p.R358* 0.27 TCGA-CD-A4MG-01 19 4037483 4037483 G T PIAS4 Missense_Mutation p.Q418H 0.33 tolerated(0.08) benign(0.246) TCGA-CD-A4MG-01 19 40411759 40411759 C T FCGBP Missense_Mutation p.R1290Q 0.29 benign(0.058) TCGA-CD-A4MG-01 19 40421121 40421121 C - FCGBP Frame_Shift_Del p.V934Cfs*44 0.10 TCGA-CD-A4MG-01 19 40478408 40478408 G A PSMC4 Missense_Mutation p.G90R 0.26 deleterious(0) probably_damaging(0.998) TCGA-CD-A4MG-01 19 40900486 40900486 C - PRX Frame_Shift_Del p.G1258Afs*124 0.17 TCGA-CD-A4MG-01 19 41078036 41078036 G A SPTBN4 Silent p.L2477L 0.06 TCGA-CD-A4MG-01 19 41387591 41387591 A G CYP2A7 Silent p.C82C 0.34 TCGA-CD-A4MG-01 19 42312872 42312872 C A CEACAM3 Missense_Mutation p.P149H 0.25 deleterious(0) possibly_damaging(0.464) TCGA-CD-A4MG-01 19 42471893 42471893 G A ATP1A3 Silent p.L961L 0.11 TCGA-CD-A4MG-01 19 4249259 4249260 - C CCDC94 Frame_Shift_Ins p.K22Qfs*23 0.19 TCGA-CD-A4MG-01 19 42584754 42584754 C T ZNF574 Missense_Mutation p.R666C 0.28 deleterious(0.02) possibly_damaging(0.876) TCGA-CD-A4MG-01 19 42585195 42585195 C T ZNF574 Missense_Mutation p.R813C 0.23 deleterious(0) probably_damaging(0.965) TCGA-CD-A4MG-01 19 42799154 42799154 C A CIC Silent p.A1546A 0.32 TCGA-CD-A4MG-01 19 42827892 42827893 - G TMEM145 Frame_Shift_Ins p.V452Gfs*32 0.12 TCGA-CD-A4MG-01 19 42855624 42855624 G A MEGF8 Missense_Mutation p.A900T 0.44 tolerated(0.08) possibly_damaging(0.494) TCGA-CD-A4MG-01 19 42891238 42891238 C T CNFN 3'UTR 0.15 TCGA-CD-A4MG-01 19 42907075 42907075 T - LIPE Frame_Shift_Del p.N884Tfs*45 0.14 TCGA-CD-A4MG-01 19 4298154 4298154 C A TMIGD2 Missense_Mutation p.G79W 0.16 deleterious(0) probably_damaging(0.935) TCGA-CD-A4MG-01 19 43026264 43026264 T C CEACAM1 Missense_Mutation p.Q172R 0.35 tolerated(0.09) possibly_damaging(0.874) TCGA-CD-A4MG-01 19 43032516 43032516 A C CEACAM1 Missense_Mutation p.L4R 0.37 tolerated(0.39) possibly_damaging(0.806) TCGA-CD-A4MG-01 19 43237119 43237119 C T PSG3 Missense_Mutation p.A176T 0.06 tolerated(1) benign(0.081) TCGA-CD-A4MG-01 19 43383721 43383721 A T PSG1 Missense_Mutation p.S5T 0.24 deleterious(0.03) probably_damaging(0.92) TCGA-CD-A4MG-01 19 43674287 43674287 G A PSG5 Missense_Mutation p.P323L 0.37 tolerated(0.09) benign(0.218) TCGA-CD-A4MG-01 19 44131874 44131874 G A CADM4 Missense_Mutation p.R45C 0.20 deleterious(0) probably_damaging(0.916) TCGA-CD-A4MG-01 19 4446367 4446367 T C UBXN6 Missense_Mutation p.M322V 0.27 deleterious(0) possibly_damaging(0.887) TCGA-CD-A4MG-01 19 45315607 45315607 C T BCAM Missense_Mutation p.A131V 0.38 deleterious(0.02) benign(0.438) TCGA-CD-A4MG-01 19 45375403 45375403 C T PVRL2 Missense_Mutation p.R258C 0.37 tolerated(0.16) possibly_damaging(0.676) TCGA-CD-A4MG-01 19 45411901 45411901 G T APOE Missense_Mutation p.Q116H 0.24 deleterious(0.01) probably_damaging(0.998) TCGA-CD-A4MG-01 19 45448424 45448424 G A APOC4 Missense_Mutation p.M82I 0.33 tolerated(0.13) benign(0) TCGA-CD-A4MG-01 19 45655437 45655437 C T NKPD1 Missense_Mutation p.R753H 0.32 tolerated(0.09) possibly_damaging(0.611) TCGA-CD-A4MG-01 19 45801436 45801436 A G MARK4 Intron 0.32 TCGA-CD-A4MG-01 19 45974241 45974241 G T FOSB Intron 0.24 TCGA-CD-A4MG-01 19 46088092 46088092 C A OPA3 5'UTR 0.27 TCGA-CD-A4MG-01 19 46268681 46268681 T C SIX5 3'UTR 0.31 TCGA-CD-A4MG-01 19 46274916 46274916 G A DMPK Missense_Mutation p.R514C 0.21 deleterious(0.03) benign(0.015) TCGA-CD-A4MG-01 19 46417622 46417622 C T NANOS2 Silent p.T110T 0.09 TCGA-CD-A4MG-01 19 46832549 46832549 C A HIF3A Missense_Mutation p.P509H 0.22 deleterious(0) probably_damaging(0.946) TCGA-CD-A4MG-01 19 4683643 4683643 T C DPP9 Splice_Site p.X727_splice 0.34 TCGA-CD-A4MG-01 19 47228903 47228903 C T STRN4 Silent p.L424L 0.27 TCGA-CD-A4MG-01 19 47548495 47548495 C T NPAS1 Silent p.N453N 0.27 TCGA-CD-A4MG-01 19 47572412 47572412 C G ZC3H4 Missense_Mutation p.E779Q 0.08 unknown(0) TCGA-CD-A4MG-01 19 4816465 4816465 G - TICAM1 Frame_Shift_Del p.P642Hfs*50 0.18 TCGA-CD-A4MG-01 19 4847789 4847789 C T PLIN3 Missense_Mutation p.A250T 0.14 deleterious(0.01) possibly_damaging(0.715) TCGA-CD-A4MG-01 19 48917267 48917267 T C GRIN2D Missense_Mutation p.W369R 0.26 tolerated(0.05) possibly_damaging(0.731) TCGA-CD-A4MG-01 19 48954305 48954305 C T GRWD1 Silent p.C280C 0.24 TCGA-CD-A4MG-01 19 48982465 48982465 T C CYTH2 Nonstop_Mutation p.*400Rext*45 0.11 TCGA-CD-A4MG-01 19 49106826 49106827 - G FAM83E Frame_Shift_Ins p.A368Gfs*21 0.26 TCGA-CD-A4MG-01 19 49110512 49110512 G A SPACA4 Missense_Mutation p.G93S 0.33 deleterious(0.04) probably_damaging(0.999) TCGA-CD-A4MG-01 19 49142188 49142188 C T CA11 Silent p.R306R 0.23 TCGA-CD-A4MG-01 19 4932904 4932904 G A MIR4747 3'Flank 0.23 TCGA-CD-A4MG-01 19 49470025 49470025 C A FTL 3'UTR 0.30 TCGA-CD-A4MG-01 19 49519339 49519339 G T LHB Missense_Mutation p.L138I 0.22 tolerated(0.22) benign(0.042) TCGA-CD-A4MG-01 19 49552108 49552108 G - CGB8 5'UTR 0.25 TCGA-CD-A4MG-01 19 49933845 49933845 C T SLC17A7 Silent p.P538P 0.35 TCGA-CD-A4MG-01 19 49993780 49993780 G A RPL13A Missense_Mutation p.R68Q 0.27 deleterious(0.02) benign(0.006) TCGA-CD-A4MG-01 19 50017697 50017697 C T FCGRT Silent p.R185R 0.14 TCGA-CD-A4MG-01 19 50063289 50063289 C A NOSIP Silent p.S26S 0.40 TCGA-CD-A4MG-01 19 50166731 50166731 T C IRF3 Missense_Mutation p.D69G 0.32 deleterious(0.01) probably_damaging(0.991) TCGA-CD-A4MG-01 19 50862846 50862846 T C NAPSA Missense_Mutation p.T284A 0.26 deleterious(0) possibly_damaging(0.906) TCGA-CD-A4MG-01 19 51015393 51015393 C A ASPDH Missense_Mutation p.A270S 0.27 tolerated(0.73) benign(0.006) TCGA-CD-A4MG-01 19 51015680 51015682 GCC - ASPDH In_Frame_Del p.A198del 0.35 TCGA-CD-A4MG-01 19 51191207 51191207 C A SHANK1 Missense_Mutation p.D761Y 0.28 benign(0.014) TCGA-CD-A4MG-01 19 51330242 51330242 C T KLK15 Missense_Mutation p.A125T 0.26 deleterious(0.01) benign(0.006) TCGA-CD-A4MG-01 19 51359493 51359493 C T KLK3 Intron 0.25 TCGA-CD-A4MG-01 19 51503766 51503766 C T KLK8 Silent p.A93A 0.07 TCGA-CD-A4MG-01 19 51507070 51507070 C T KLK9 Missense_Mutation p.A165T 0.15 deleterious(0.03) probably_damaging(0.999) TCGA-CD-A4MG-01 19 51830340 51830340 C T IGLON5 Missense_Mutation p.P218L 0.21 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 19 51960986 51960986 G T SIGLEC8 Silent p.T154T 0.26 TCGA-CD-A4MG-01 19 52130901 52130901 G A SIGLEC5 Missense_Mutation p.R366W 0.24 tolerated(0.22) benign(0.015) TCGA-CD-A4MG-01 19 52133152 52133152 G A SIGLEC5 Missense_Mutation p.R119C 0.25 deleterious(0) probably_damaging(0.99) TCGA-CD-A4MG-01 19 52620073 52620074 - G ZNF616 Frame_Shift_Ins p.H115Pfs*2 0.24 TCGA-CD-A4MG-01 19 52794336 52794336 G A ZNF766 Missense_Mutation p.R431K 0.09 tolerated(0.59) benign(0.326) TCGA-CD-A4MG-01 19 53117856 53117856 G A ZNF83 5'UTR 0.31 TCGA-CD-A4MG-01 19 53952855 53952855 G A ZNF761 RNA 0.27 TCGA-CD-A4MG-01 19 54444820 54444820 G A CACNG7 Missense_Mutation p.R174H 0.20 tolerated(0.3) benign(0.005) TCGA-CD-A4MG-01 19 54444845 54444845 C A CACNG7 Silent p.A182A 0.26 TCGA-CD-A4MG-01 19 54445522 54445522 T C CACNG7 Missense_Mutation p.L268P 0.24 tolerated_low_confidence(0.2) benign(0.001) TCGA-CD-A4MG-01 19 54445580 54445580 C T CACNG7 3'UTR 0.38 TCGA-CD-A4MG-01 19 54483177 54483177 G - CACNG8 Frame_Shift_Del p.G143Vfs*29 0.23 TCGA-CD-A4MG-01 19 54611662 54611662 G A TFPT Missense_Mutation p.R132W 0.37 tolerated(0.09) benign(0.158) TCGA-CD-A4MG-01 19 54664875 54664875 G A TMC4 Silent p.S609S 0.23 TCGA-CD-A4MG-01 19 54782342 54782342 G A LILRB2 Silent p.L344L 0.39 TCGA-CD-A4MG-01 19 54966171 54966171 C T LENG8 Nonsense_Mutation p.R241* 0.26 TCGA-CD-A4MG-01 19 55144181 55144181 C A LILRB1 Missense_Mutation p.P310T 0.25 deleterious(0) possibly_damaging(0.547) TCGA-CD-A4MG-01 19 55351096 55351096 C T KIR2DS4 Missense_Mutation p.S195F 0.25 deleterious_low_confidence(0.01) benign(0.001) TCGA-CD-A4MG-01 19 55556410 55556410 C T RDH13 3'UTR 0.40 TCGA-CD-A4MG-01 19 55559833 55559833 G T RDH13 Silent p.S174S 0.23 TCGA-CD-A4MG-01 19 55718172 55718172 T C PTPRH Silent p.T79T 0.16 TCGA-CD-A4MG-01 19 55738637 55738637 G A TMEM86B Missense_Mutation p.A198V 0.20 deleterious(0.01) probably_damaging(0.941) TCGA-CD-A4MG-01 19 55993937 55993937 C T ZNF628 Silent p.C459C 0.35 TCGA-CD-A4MG-01 19 55995122 55995122 C A ZNF628 Silent p.V854V 0.18 TCGA-CD-A4MG-01 19 56090214 56090214 C T ZNF579 Silent p.P264P 0.35 TCGA-CD-A4MG-01 19 56155974 56155974 G A ZNF581 Missense_Mutation p.A13T 0.16 tolerated(0.14) benign(0.091) TCGA-CD-A4MG-01 19 56173906 56173906 G - U2AF2 Frame_Shift_Del p.L178* 0.27 TCGA-CD-A4MG-01 19 56482022 56482022 G - NLRP8 Frame_Shift_Del p.A833Rfs*14 0.19 TCGA-CD-A4MG-01 19 5679654 5679654 G - C19orf70 Frame_Shift_Del p.A51Pfs*39 0.22 TCGA-CD-A4MG-01 19 57175886 57175886 G A ZNF835 Silent p.C227C 0.36 TCGA-CD-A4MG-01 19 577839 577839 G A BSG Missense_Mutation p.E45K 0.45 deleterious(0) possibly_damaging(0.814) TCGA-CD-A4MG-01 19 58049967 58049967 A G ZNF549 Missense_Mutation p.N532S 0.32 tolerated(1) benign(0.065) TCGA-CD-A4MG-01 19 58084579 58084579 A - ZNF416 Frame_Shift_Del p.H232Tfs*54 0.21 TCGA-CD-A4MG-01 19 58350411 58350411 C T ZNF587B Silent p.D19D 0.23 TCGA-CD-A4MG-01 19 58966986 58966986 C T ZNF324B Silent p.G225G 0.24 TCGA-CD-A4MG-01 19 59060528 59060528 C A TRIM28 Missense_Mutation p.A528D 0.26 deleterious(0.04) benign(0.122) TCGA-CD-A4MG-01 19 5915019 5915019 C T CAPS Silent p.D110D 0.25 TCGA-CD-A4MG-01 19 5941834 5941834 C T RANBP3 Missense_Mutation p.G99S 0.23 tolerated_low_confidence(0.08) benign(0.045) TCGA-CD-A4MG-01 19 6047472 6047472 C T RFX2 Silent p.A12A 0.40 TCGA-CD-A4MG-01 19 6468936 6468936 C - DENND1C Frame_Shift_Del p.G479Afs*3 0.21 TCGA-CD-A4MG-01 19 648111 648111 C T RNF126 3'UTR 0.19 TCGA-CD-A4MG-01 19 6501365 6501365 G A TUBB4A Silent p.P70P 0.27 TCGA-CD-A4MG-01 19 6665335 6665335 C T TNFSF14 Missense_Mutation p.G109R 0.17 tolerated(0.09) benign(0.187) TCGA-CD-A4MG-01 19 7509263 7509263 C T ARHGEF18 Missense_Mutation p.R324C 0.31 deleterious(0.02) probably_damaging(1) TCGA-CD-A4MG-01 19 757730 757730 C T MISP Missense_Mutation p.R262C 0.17 tolerated(0.17) benign(0.01) TCGA-CD-A4MG-01 19 7619468 7619468 G A PNPLA6 Nonsense_Mutation p.W841* 0.28 TCGA-CD-A4MG-01 19 7676713 7676713 C - CAMSAP3 Frame_Shift_Del p.T474Pfs*116 0.15 TCGA-CD-A4MG-01 19 7965099 7965099 C T LRRC8E Silent p.S564S 0.14 TCGA-CD-A4MG-01 19 8156411 8156411 C A FBN3 Missense_Mutation p.G1990V 0.29 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 19 8186207 8186207 C T FBN3 Missense_Mutation p.G1049D 0.12 deleterious(0) probably_damaging(0.997) TCGA-CD-A4MG-01 19 8201336 8201336 C T FBN3 Silent p.T427T 0.27 TCGA-CD-A4MG-01 19 8368790 8368790 G A CD320 Missense_Mutation p.R151C 0.21 deleterious(0.03) probably_damaging(0.91) TCGA-CD-A4MG-01 19 8387793 8387793 G - KANK3 Frame_Shift_Del p.P799Lfs*33 0.22 TCGA-CD-A4MG-01 19 8609306 8609306 T C MYO1F Missense_Mutation p.T467A 0.15 tolerated(0.07) benign(0.169) TCGA-CD-A4MG-01 19 8654234 8654234 G A ADAMTS10 Nonsense_Mutation p.R684* 0.28 TCGA-CD-A4MG-01 19 9057577 9057577 T C MUC16 Missense_Mutation p.T9957A 0.11 unknown(0) TCGA-CD-A4MG-01 19 9066128 9066128 G T MUC16 Silent p.T7106T 0.23 TCGA-CD-A4MG-01 19 9072308 9072308 T C MUC16 Silent p.S5046S 0.14 TCGA-CD-A4MG-01 19 9090342 9090342 C T MUC16 Silent p.G491G 0.21 TCGA-CD-A4MG-01 1 102269822 102269822 T C OLFM3 Missense_Mutation p.H450R 0.34 deleterious(0.04) probably_damaging(0.994) TCGA-CD-A4MG-01 1 103427801 103427801 A G COL11A1 Silent p.G1015G 0.33 TCGA-CD-A4MG-01 1 10407870 10407871 - T KIF1B Frame_Shift_Ins p.L1239Ffs*17 0.11 TCGA-CD-A4MG-01 1 10703053 10703053 G T CASZ1 Missense_Mutation p.P1342H 0.20 deleterious_low_confidence(0.05) possibly_damaging(0.846) TCGA-CD-A4MG-01 1 110172534 110172534 G A AMPD2 Missense_Mutation p.R714H 0.23 deleterious(0) probably_damaging(0.99) TCGA-CD-A4MG-01 1 110754481 110754481 C T KCNC4 Silent p.D120D 0.23 TCGA-CD-A4MG-01 1 111959046 111959046 G C OVGP1 Missense_Mutation p.A352G 0.32 deleterious(0.02) probably_damaging(1) TCGA-CD-A4MG-01 1 1120587 1120587 G A TTLL10 Intron 0.43 TCGA-CD-A4MG-01 1 113058867 113058867 C T WNT2B Missense_Mutation p.P170L 0.11 tolerated(0.1) benign(0.104) TCGA-CD-A4MG-01 1 114267508 114267508 G A PHTF1 Nonsense_Mutation p.R166* 0.40 TCGA-CD-A4MG-01 1 114424449 114424449 A G BCL2L15 Silent p.G140G 0.33 TCGA-CD-A4MG-01 1 114497345 114497345 T - HIPK1 Frame_Shift_Del p.F426Sfs*26 0.32 TCGA-CD-A4MG-01 1 1147460 1147460 A G TNFRSF4 Missense_Mutation p.C166R 0.17 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MG-01 1 114948108 114948110 CTC - TRIM33 In_Frame_Del p.G897del 0.32 TCGA-CD-A4MG-01 1 117307144 117307144 G A CD2 Missense_Mutation p.G218R 0.24 deleterious(0.04) probably_damaging(0.974) TCGA-CD-A4MG-01 1 11735180 11735180 G - MAD2L2 Frame_Shift_Del p.R185Gfs*2 0.17 TCGA-CD-A4MG-01 1 11796279 11796279 C T AGTRAP Missense_Mutation p.A5V 0.41 tolerated(0.29) benign(0.006) TCGA-CD-A4MG-01 1 118475968 118475968 G A WDR3 Missense_Mutation p.R9H 0.11 deleterious(0) probably_damaging(0.958) TCGA-CD-A4MG-01 1 11985559 11985559 G A KIAA2013 Missense_Mutation p.L246F 0.26 deleterious(0.02) probably_damaging(0.995) TCGA-CD-A4MG-01 1 120462204 120462204 G A NOTCH2 Nonsense_Mutation p.R1838* 0.29 TCGA-CD-A4MG-01 1 12049220 12049220 A T MFN2 Splice_Site 0.08 TCGA-CD-A4MG-01 1 12267073 12267073 G A TNFRSF1B Missense_Mutation p.S461N 0.28 tolerated(0.11) benign(0.109) TCGA-CD-A4MG-01 1 12339611 12339612 AG - VPS13D Frame_Shift_Del p.E1505Ifs*2 0.17 TCGA-CD-A4MG-01 1 1236072 1236072 C A ACAP3 Missense_Mutation p.E113D 0.23 tolerated(0.21) benign(0.002) TCGA-CD-A4MG-01 1 12364661 12364662 - T VPS13D Frame_Shift_Ins p.T2107Hfs*15 0.23 TCGA-CD-A4MG-01 1 12628296 12628296 G T DHRS3 3'UTR 0.30 TCGA-CD-A4MG-01 1 1290110 1290110 G - MXRA8 Frame_Shift_Del p.R301Gfs*107 0.44 TCGA-CD-A4MG-01 1 1372689 1372689 C - VWA1 Frame_Shift_Del p.M155Cfs*51 0.18 TCGA-CD-A4MG-01 1 145075825 145075825 C T PDE4DIP Missense_Mutation p.R13Q 0.07 tolerated_low_confidence(0.08) benign(0.417) TCGA-CD-A4MG-01 1 145522811 145522811 A G PEX11B Silent p.K224K 0.18 TCGA-CD-A4MG-01 1 146398325 146398325 G A NBPF12 Missense_Mutation p.R104Q 0.10 benign(0.412) TCGA-CD-A4MG-01 1 147091072 147091072 C T BCL9 Missense_Mutation p.R371C 0.14 deleterious(0) probably_damaging(0.997) TCGA-CD-A4MG-01 1 147094247 147094247 T C BCL9 Silent p.H1026H 0.07 TCGA-CD-A4MG-01 1 149915672 149915672 T C OTUD7B 3'UTR 0.11 TCGA-CD-A4MG-01 1 150477205 150477205 A G TARS2 Missense_Mutation p.K606E 0.20 deleterious(0) possibly_damaging(0.488) TCGA-CD-A4MG-01 1 150549829 150549829 A G MCL1 3'UTR 0.06 TCGA-CD-A4MG-01 1 150789854 150789854 T C ARNT Missense_Mutation p.S521G 0.49 tolerated_low_confidence(0.41) benign(0) TCGA-CD-A4MG-01 1 150973770 150973770 T C FAM63A Missense_Mutation p.K226E 0.51 tolerated(0.06) benign(0.128) TCGA-CD-A4MG-01 1 151259208 151259208 C T ZNF687 Silent p.G147G 0.11 TCGA-CD-A4MG-01 1 151378465 151378465 C - POGZ Frame_Shift_Del p.E1016Rfs*3 0.15 TCGA-CD-A4MG-01 1 151552160 151552160 C T TUFT1 Silent p.D320D 0.15 TCGA-CD-A4MG-01 1 151748697 151748697 T C TDRKH Silent p.L364L 0.17 TCGA-CD-A4MG-01 1 152084132 152084132 G A TCHH Missense_Mutation p.R521C 0.06 unknown(0) TCGA-CD-A4MG-01 1 152128685 152128685 T C RPTN Missense_Mutation p.Q297R 0.05 deleterious(0.02) possibly_damaging(0.638) TCGA-CD-A4MG-01 1 152193216 152193216 C T HRNR Missense_Mutation p.G297S 0.05 unknown(0) TCGA-CD-A4MG-01 1 152284603 152284603 G A FLG Missense_Mutation p.A920V 0.47 probably_damaging(0.997) TCGA-CD-A4MG-01 1 152285135 152285135 T C FLG Missense_Mutation p.S743G 0.23 probably_damaging(0.952) TCGA-CD-A4MG-01 1 152285248 152285248 C T FLG Missense_Mutation p.G705E 0.04 probably_damaging(0.997) TCGA-CD-A4MG-01 1 152287065 152287065 G A FLG Silent p.H99H 0.58 TCGA-CD-A4MG-01 1 152382565 152382565 G A CRNN Silent p.H331H 0.44 TCGA-CD-A4MG-01 1 152382714 152382714 C A CRNN Missense_Mutation p.V282L 0.44 tolerated(0.15) benign(0.035) TCGA-CD-A4MG-01 1 152759923 152759923 G T LCE1E Missense_Mutation p.G50C 0.15 deleterious_low_confidence(0.02) unknown(0) TCGA-CD-A4MG-01 1 152883824 152883824 C T IVL Silent p.D517D 0.23 TCGA-CD-A4MG-01 1 152957688 152957688 A - SPRR1A Intron 0.37 TCGA-CD-A4MG-01 1 153520867 153520867 G A S100A3 Missense_Mutation p.A32V 0.16 tolerated(0.12) possibly_damaging(0.491) TCGA-CD-A4MG-01 1 15390105 15390105 A G KAZN Missense_Mutation p.N362S 0.20 tolerated(0.25) benign(0.209) TCGA-CD-A4MG-01 1 153958742 153958743 - G RAB13 5'UTR 0.12 TCGA-CD-A4MG-01 1 154027309 154027309 C T NUP210L Splice_Site p.X1081_splice 0.37 TCGA-CD-A4MG-01 1 154113971 154113971 T C NUP210L Missense_Mutation p.M168V 0.12 tolerated(1) benign(0.001) TCGA-CD-A4MG-01 1 154401816 154401816 T C IL6R Missense_Mutation p.M77T 0.18 tolerated(0.23) benign(0.001) TCGA-CD-A4MG-01 1 155018875 155018875 C G DCST1 Missense_Mutation p.L470V 0.53 tolerated(0.17) possibly_damaging(0.759) TCGA-CD-A4MG-01 1 155149471 155149471 G T TRIM46 Missense_Mutation p.V245L 0.13 tolerated(0.36) benign(0.01) TCGA-CD-A4MG-01 1 155156381 155156381 G A TRIM46 Silent p.S665S 0.27 TCGA-CD-A4MG-01 1 155161902 155161902 A G MUC1 Silent p.D77D 0.19 TCGA-CD-A4MG-01 1 155175014 155175016 AGG - THBS3 In_Frame_Del p.L127del 0.18 TCGA-CD-A4MG-01 1 155178611 155178611 C - MTX1 Frame_Shift_Del p.R8Afs*110 0.26 TCGA-CD-A4MG-01 1 155322513 155322513 A G ASH1L Silent p.G2450G 0.08 TCGA-CD-A4MG-01 1 155717547 155717547 G A GON4L 3'Flank 0.20 TCGA-CD-A4MG-01 1 155717785 155717785 C A GON4L 3'Flank 0.13 TCGA-CD-A4MG-01 1 156047288 156047288 A G MEX3A Missense_Mutation p.F214L 0.50 tolerated(0.76) benign(0.446) TCGA-CD-A4MG-01 1 156230351 156230351 C T SMG5 Missense_Mutation p.S725N 0.21 tolerated(0.31) benign(0.002) TCGA-CD-A4MG-01 1 156290648 156290648 T - CCT3 Frame_Shift_Del p.K197Nfs*23 0.15 TCGA-CD-A4MG-01 1 156779586 156779586 G A SH2D2A Missense_Mutation p.A204V 0.07 tolerated(0.17) benign(0.018) TCGA-CD-A4MG-01 1 15832493 15832493 C T CASP9 Missense_Mutation p.G238S 0.21 deleterious(0.02) probably_damaging(0.976) TCGA-CD-A4MG-01 1 158622327 158622327 T - SPTA1 Frame_Shift_Del p.K1102Rfs*9 0.15 TCGA-CD-A4MG-01 1 159021716 159021716 G A IFI16 Missense_Mutation p.R582H 0.18 tolerated(0.11) benign(0.049) TCGA-CD-A4MG-01 1 159162508 159162508 G A CADM3 Missense_Mutation p.V158I 0.25 tolerated(0.52) possibly_damaging(0.573) TCGA-CD-A4MG-01 1 159409818 159409818 A C OR10J1 Silent p.P90P 0.32 TCGA-CD-A4MG-01 1 159683390 159683390 A G CRP Silent p.P200P 0.08 TCGA-CD-A4MG-01 1 159684248 159684248 A G CRP Silent p.L10L 0.17 TCGA-CD-A4MG-01 1 159842807 159842807 G A CCDC19 Missense_Mutation p.R502C 0.18 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MG-01 1 160011752 160011752 T C KCNJ10 Missense_Mutation p.N191D 0.22 tolerated(1) benign(0.004) TCGA-CD-A4MG-01 1 160062116 160062116 C T IGSF8 Missense_Mutation p.G561D 0.08 deleterious(0.01) benign(0.343) TCGA-CD-A4MG-01 1 160062786 160062786 C A IGSF8 Missense_Mutation p.G414W 0.32 tolerated(0.16) probably_damaging(1) TCGA-CD-A4MG-01 1 160134106 160134106 T - ATP1A4 Frame_Shift_Del p.F315Lfs*38 0.18 TCGA-CD-A4MG-01 1 160141449 160141449 A G ATP1A4 Missense_Mutation p.M586V 0.18 tolerated(0.44) benign(0.007) TCGA-CD-A4MG-01 1 160249918 160249918 G A PEX19 Missense_Mutation p.T238I 0.26 tolerated(0.13) benign(0.1) TCGA-CD-A4MG-01 1 160319417 160319417 C A NCSTN Silent p.A131A 0.26 TCGA-CD-A4MG-01 1 16065821 16065821 G T SLC25A34 Missense_Mutation p.G279C 0.33 deleterious(0.01) probably_damaging(0.995) TCGA-CD-A4MG-01 1 160970515 160970515 G A F11R Silent p.S98S 0.20 TCGA-CD-A4MG-01 1 161021109 161021114 GGGCCA - ARHGAP30 In_Frame_Del p.G471_P472del 0.19 TCGA-CD-A4MG-01 1 161090509 161090509 A G NIT1 Missense_Mutation p.H313R 0.14 deleterious(0) probably_damaging(0.95) TCGA-CD-A4MG-01 1 161165362 161165362 C T ADAMTS4 Missense_Mutation p.S385N 0.13 tolerated(0.44) benign(0.019) TCGA-CD-A4MG-01 1 161183811 161183811 G A NDUFS2 Intron 0.54 TCGA-CD-A4MG-01 1 161202682 161202682 G A NR1I3 Silent p.L155L 0.17 TCGA-CD-A4MG-01 1 161681812 161681812 G A FCRLA Silent p.L219L 0.23 TCGA-CD-A4MG-01 1 161969963 161969963 G T OLFML2B Silent p.R297R 0.21 TCGA-CD-A4MG-01 1 162549290 162549290 A - UAP1 Frame_Shift_Del p.E189Rfs*3 0.15 TCGA-CD-A4MG-01 1 16257670 16257670 A G SPEN Silent p.V1645V 0.06 TCGA-CD-A4MG-01 1 16260214 16260214 C - SPEN Frame_Shift_Del p.P2495Lfs*4 0.26 TCGA-CD-A4MG-01 1 16261773 16261773 T A SPEN Missense_Mutation p.V3013D 0.08 benign(0.439) TCGA-CD-A4MG-01 1 162773258 162773258 T C HSD17B7 Missense_Mutation p.L227S 0.46 tolerated(0.06) benign(0.04) TCGA-CD-A4MG-01 1 163043395 163043395 G A RGS4 Missense_Mutation p.V218I 0.21 tolerated(0.28) benign(0.062) TCGA-CD-A4MG-01 1 163044171 163044171 A G RGS4 Missense_Mutation p.T244A 0.27 tolerated(0.05) benign(0.064) TCGA-CD-A4MG-01 1 163044386 163044387 CT - RGS4 3'UTR 0.13 TCGA-CD-A4MG-01 1 16461594 16461594 C T EPHA2 Missense_Mutation p.V507M 0.10 deleterious(0) probably_damaging(0.986) TCGA-CD-A4MG-01 1 16464532 16464532 G A EPHA2 Silent p.C376C 0.13 TCGA-CD-A4MG-01 1 164761864 164761864 G A PBX1 Silent p.A133A 0.48 TCGA-CD-A4MG-01 1 165324849 165324849 G A LMX1A Intron 0.31 TCGA-CD-A4MG-01 1 16736474 16736474 G A SPATA21 Missense_Mutation p.A70V 0.29 tolerated(1) benign(0) TCGA-CD-A4MG-01 1 167814929 167814931 TCT - ADCY10 In_Frame_Del p.E959del 0.17 TCGA-CD-A4MG-01 1 167863157 167863157 C T ADCY10 Silent p.T254T 0.27 TCGA-CD-A4MG-01 1 168278092 168278092 C T TBX19 Silent p.N343N 0.11 TCGA-CD-A4MG-01 1 169351458 169351458 A - BLZF1 Frame_Shift_Del p.K321Rfs*21 0.23 TCGA-CD-A4MG-01 1 1696665 1696665 A G NADK Splice_Site p.X60_splice 0.21 TCGA-CD-A4MG-01 1 169790902 169790902 T C C1orf112 Splice_Site p.X261_splice 0.15 TCGA-CD-A4MG-01 1 17025939 17025939 A G ESPNP RNA 0.45 TCGA-CD-A4MG-01 1 170955724 170955724 C A MROH9 Missense_Mutation p.P251H 0.24 deleterious(0) probably_damaging(0.998) TCGA-CD-A4MG-01 1 175067636 175067636 T C TNN Missense_Mutation p.L675P 0.18 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 1 177250156 177250156 G T BRINP2 Missense_Mutation p.R615M 0.24 deleterious(0) probably_damaging(0.996) TCGA-CD-A4MG-01 1 179013231 179013231 G T FAM20B Missense_Mutation p.E83D 0.16 tolerated(0.17) benign(0.027) TCGA-CD-A4MG-01 1 180235643 180235643 G A LHX4 Missense_Mutation p.R122Q 0.23 deleterious(0.01) probably_damaging(0.99) TCGA-CD-A4MG-01 1 180849282 180849282 C T XPR1 Missense_Mutation p.R627W 0.14 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 1 18152415 18152415 G A ACTL8 Missense_Mutation p.A168T 0.24 deleterious(0.03) benign(0.034) TCGA-CD-A4MG-01 1 181690989 181690989 T C CACNA1E Silent p.I684I 0.26 TCGA-CD-A4MG-01 1 181727162 181727162 G A CACNA1E Missense_Mutation p.R1470H 0.12 deleterious(0) possibly_damaging(0.522) TCGA-CD-A4MG-01 1 181762849 181762849 A G CACNA1E Missense_Mutation p.I1983V 0.12 tolerated(0.52) benign(0.067) TCGA-CD-A4MG-01 1 183072489 183072489 C T LAMC1 Missense_Mutation p.R149C 0.07 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 1 183094532 183094532 C T LAMC1 Missense_Mutation p.A883V 0.17 deleterious(0) benign(0.163) TCGA-CD-A4MG-01 1 183195988 183195988 G T LAMC2 Missense_Mutation p.G408W 0.08 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 1 183518986 183518986 G C SMG7 Missense_Mutation p.A975P 0.20 tolerated_low_confidence(0.05) benign(0.013) TCGA-CD-A4MG-01 1 185125667 185125667 C T TRMT1L Missense_Mutation p.A60T 0.14 tolerated_low_confidence(0.52) possibly_damaging(0.483) TCGA-CD-A4MG-01 1 185703900 185703900 A - HMCN1 5'UTR 0.38 TCGA-CD-A4MG-01 1 185959420 185959420 G A HMCN1 Silent p.V1074V 0.06 TCGA-CD-A4MG-01 1 186277954 186277954 A - PRG4 Frame_Shift_Del p.K1036Sfs*8 0.37 TCGA-CD-A4MG-01 1 186839610 186839610 G A PLA2G4A Missense_Mutation p.R26H 0.09 deleterious(0.01) benign(0.008) TCGA-CD-A4MG-01 1 193018904 193018904 C T UCHL5 Missense_Mutation p.R73Q 0.09 deleterious(0.03) probably_damaging(0.935) TCGA-CD-A4MG-01 1 19413188 19413188 T C UBR4 Missense_Mutation p.H4891R 0.21 probably_damaging(0.954) TCGA-CD-A4MG-01 1 19503100 19503100 T G UBR4 Missense_Mutation p.K920T 0.10 possibly_damaging(0.791) TCGA-CD-A4MG-01 1 19653833 19653833 G T PQLC2 Missense_Mutation p.S244I 0.08 tolerated(0.18) benign(0.071) TCGA-CD-A4MG-01 1 196965192 196965192 C T CFHR5 Silent p.Y277Y 0.08 TCGA-CD-A4MG-01 1 197032137 197032137 A G F13B Missense_Mutation p.Y39H 0.14 deleterious(0) probably_damaging(0.995) TCGA-CD-A4MG-01 1 197101439 197101439 A C ASPM Silent p.P821P 0.46 TCGA-CD-A4MG-01 1 197115434 197115434 C T ASPM Missense_Mutation p.C45Y 0.12 deleterious(0.01) benign(0.405) TCGA-CD-A4MG-01 1 19775381 19775381 A G CAPZB Intron 0.25 TCGA-CD-A4MG-01 1 198701676 198701676 C T PTPRC Silent p.S711S 0.21 TCGA-CD-A4MG-01 1 200842781 200842781 C A GPR25 Missense_Mutation p.L206M 0.08 tolerated(0.5) benign(0.114) TCGA-CD-A4MG-01 1 200956152 200956152 C T KIF21B Missense_Mutation p.V1196I 0.18 tolerated(0.57) benign(0) TCGA-CD-A4MG-01 1 200959808 200959808 C T KIF21B Missense_Mutation p.A911T 0.17 tolerated(0.46) benign(0.014) TCGA-CD-A4MG-01 1 201836035 201836035 G T IPO9 Missense_Mutation p.M601I 0.07 tolerated(0.34) benign(0.001) TCGA-CD-A4MG-01 1 202097427 202097427 C A GPR37L1 Missense_Mutation p.L397M 0.26 deleterious(0.01) probably_damaging(1) TCGA-CD-A4MG-01 1 202573722 202573722 G A SYT2 Missense_Mutation p.A69V 0.16 tolerated(0.4) possibly_damaging(0.483) TCGA-CD-A4MG-01 1 202711578 202711578 G A KDM5B Nonsense_Mutation p.Q844* 0.16 TCGA-CD-A4MG-01 1 202862461 202862461 G A KLHL12 Missense_Mutation p.R496C 0.19 tolerated(0.05) benign(0.014) TCGA-CD-A4MG-01 1 202934505 202934505 C A CYB5R1 Nonsense_Mutation p.G157* 0.18 TCGA-CD-A4MG-01 1 203681119 203681119 C A ATP2B4 Missense_Mutation p.A688D 0.40 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 1 205388357 205388357 C T LEMD1 Splice_Site p.X69_splice 0.20 TCGA-CD-A4MG-01 1 205719147 205719147 C - NUCKS1 5'UTR 0.34 TCGA-CD-A4MG-01 1 206757767 206757767 C T RASSF5 Missense_Mutation p.R247W 0.18 deleterious(0.02) possibly_damaging(0.794) TCGA-CD-A4MG-01 1 207263776 207263776 T - C4BPB Frame_Shift_Del p.C63Afs*25 0.30 TCGA-CD-A4MG-01 1 207700217 207700217 G A CR1 Missense_Mutation p.A336T 0.60 tolerated(0.58) possibly_damaging(0.828) TCGA-CD-A4MG-01 1 208227819 208227820 - A PLXNA2 Frame_Shift_Ins p.G935Wfs*4 0.31 TCGA-CD-A4MG-01 1 209955541 209955541 A G TRAF3IP3 3'UTR 0.15 TCGA-CD-A4MG-01 1 212506858 212506858 G A PPP2R5A Missense_Mutation p.R133H 0.12 deleterious(0) probably_damaging(0.966) TCGA-CD-A4MG-01 1 212977736 212977736 A T TATDN3 Missense_Mutation p.R132S 0.14 tolerated(0.07) benign(0.029) TCGA-CD-A4MG-01 1 214537979 214537979 T C PTPN14 Missense_Mutation p.N1104S 0.22 tolerated(0.06) probably_damaging(0.986) TCGA-CD-A4MG-01 1 214819048 214819048 G T CENPF Missense_Mutation p.Q2045H 0.45 benign(0.027) TCGA-CD-A4MG-01 1 215853644 215853644 G A USH2A Silent p.N4047N 0.22 TCGA-CD-A4MG-01 1 216260158 216260158 G A USH2A Silent p.S1630S 0.15 TCGA-CD-A4MG-01 1 216538367 216538367 T C USH2A Missense_Mutation p.N238D 0.15 benign(0) TCGA-CD-A4MG-01 1 21977933 21977933 A G RAP1GAP Intron 0.19 TCGA-CD-A4MG-01 1 21978087 21978088 AC - RAP1GAP Intron 0.30 TCGA-CD-A4MG-01 1 220253145 220253145 G A BPNT1 Missense_Mutation p.A15V 0.13 deleterious(0.01) possibly_damaging(0.569) TCGA-CD-A4MG-01 1 22142503 22142503 C A LDLRAD2 Silent p.P193P 0.26 TCGA-CD-A4MG-01 1 22154539 22154539 G A HSPG2 Silent p.G4172G 0.24 TCGA-CD-A4MG-01 1 22160011 22160011 C T HSPG2 Missense_Mutation p.A3643T 0.27 probably_damaging(0.999) TCGA-CD-A4MG-01 1 22166485 22166485 G A HSPG2 Missense_Mutation p.A3180V 0.36 possibly_damaging(0.57) TCGA-CD-A4MG-01 1 222717093 222717093 G A HHIPL2 Missense_Mutation p.P254S 0.27 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 1 222806530 222806530 T C MIA3 Missense_Mutation p.V1139A 0.26 tolerated(0.72) benign(0.003) TCGA-CD-A4MG-01 1 223164985 223164985 A - DISP1 Frame_Shift_Del p.S264Afs*62 0.20 TCGA-CD-A4MG-01 1 224318241 224318241 A G FBXO28 Missense_Mutation p.Y112C 0.09 tolerated(0.06) possibly_damaging(0.533) TCGA-CD-A4MG-01 1 224488264 224488264 C A NVL Silent p.V354V 0.09 TCGA-CD-A4MG-01 1 226027006 226027006 G T EPHX1 Missense_Mutation p.W227C 0.23 deleterious(0) possibly_damaging(0.744) TCGA-CD-A4MG-01 1 226109705 226109705 G A PYCR2 Silent p.G131G 0.28 TCGA-CD-A4MG-01 1 227921073 227921073 C T SNAP47 5'Flank 0.31 TCGA-CD-A4MG-01 1 227946918 227946918 T C SNAP47 Silent p.H285H 0.20 TCGA-CD-A4MG-01 1 228109533 228109533 C T WNT9A Missense_Mutation p.G262S 0.23 deleterious(0.03) probably_damaging(0.941) TCGA-CD-A4MG-01 1 228246907 228246907 C T WNT3A Missense_Mutation p.T267M 0.11 deleterious(0) probably_damaging(0.947) TCGA-CD-A4MG-01 1 228461234 228461234 G A OBSCN Missense_Mutation p.R2083H 0.15 benign(0.012) TCGA-CD-A4MG-01 1 228464274 228464274 G A OBSCN Missense_Mutation p.R2490Q 0.12 benign(0.405) TCGA-CD-A4MG-01 1 228503673 228503673 G A OBSCN Missense_Mutation p.V5337M 0.32 probably_damaging(0.99) TCGA-CD-A4MG-01 1 228547984 228547984 T G OBSCN Intron 0.48 TCGA-CD-A4MG-01 1 228612855 228612856 - CTT HIST3H3 In_Frame_Ins p.K57dup 0.19 TCGA-CD-A4MG-01 1 22987468 22987468 G T C1QB Missense_Mutation p.K117N 0.07 deleterious(0) possibly_damaging(0.903) TCGA-CD-A4MG-01 1 230486741 230486741 C T PGBD5 Nonsense_Mutation p.W217* 0.11 TCGA-CD-A4MG-01 1 231060677 231060677 C T TTC13 Missense_Mutation p.R544H 0.45 tolerated(0.1) benign(0.312) TCGA-CD-A4MG-01 1 232649623 232649623 C T SIPA1L2 Missense_Mutation p.R488H 0.21 tolerated(0.19) benign(0.075) TCGA-CD-A4MG-01 1 233363000 233363000 G A PCNXL2 Nonsense_Mutation p.R826* 0.13 TCGA-CD-A4MG-01 1 233518485 233518485 T - MLK4 3'UTR 0.16 TCGA-CD-A4MG-01 1 2338232 2338232 G A PEX10 Nonsense_Mutation p.Q255* 0.12 TCGA-CD-A4MG-01 1 23415291 23415291 T C LUZP1 3'UTR 0.38 TCGA-CD-A4MG-01 1 234742862 234742863 - T IRF2BP2 3'UTR 0.10 TCGA-CD-A4MG-01 1 235618966 235618966 C G B3GALNT2 Missense_Mutation p.L352F 0.26 deleterious(0.01) probably_damaging(0.909) TCGA-CD-A4MG-01 1 236721732 236721732 G A HEATR1 Missense_Mutation p.A1670V 0.18 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 1 236902795 236902795 G A ACTN2 Missense_Mutation p.R357H 0.23 deleterious(0) possibly_damaging(0.855) TCGA-CD-A4MG-01 1 237791219 237791219 C T RYR2 Silent p.D2093D 0.11 TCGA-CD-A4MG-01 1 237870335 237870335 G A RYR2 Missense_Mutation p.E3223K 0.27 possibly_damaging(0.473) TCGA-CD-A4MG-01 1 240072104 240072104 G A CHRM3 Silent p.T451T 0.52 TCGA-CD-A4MG-01 1 24140706 24140706 C T HMGCL Silent p.A157A 0.29 TCGA-CD-A4MG-01 1 241797042 241797042 A G CHML 3'UTR 0.15 TCGA-CD-A4MG-01 1 2420769 2420769 C A PLCH2 Silent p.A426A 0.10 TCGA-CD-A4MG-01 1 24398464 24398464 T G MYOM3 Missense_Mutation p.N1003T 0.09 deleterious(0.01) possibly_damaging(0.881) TCGA-CD-A4MG-01 1 24484104 24484104 G A IFNLR1 Missense_Mutation p.S360L 0.23 tolerated(0.08) benign(0.039) TCGA-CD-A4MG-01 1 246711878 246711878 C T TFB2M Missense_Mutation p.R276Q 0.08 tolerated(0.76) benign(0.006) TCGA-CD-A4MG-01 1 247039433 247039433 G A AHCTF1 Silent p.D1007D 0.18 TCGA-CD-A4MG-01 1 247150765 247150765 G T ZNF695 Missense_Mutation p.T351N 0.20 deleterious(0) possibly_damaging(0.898) TCGA-CD-A4MG-01 1 247151070 247151070 A - ZNF695 Frame_Shift_Del p.F249Lfs*119 0.14 TCGA-CD-A4MG-01 1 247200798 247200798 T C ZNF670 Missense_Mutation p.S375G 0.53 tolerated(0.13) possibly_damaging(0.451) TCGA-CD-A4MG-01 1 24779967 24779967 G A NIPAL3 Missense_Mutation p.V204M 0.15 deleterious(0) possibly_damaging(0.777) TCGA-CD-A4MG-01 1 248039226 248039226 C T TRIM58 Missense_Mutation p.T299M 0.23 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 1 248112950 248112950 T C OR2L8 Missense_Mutation p.L264P 0.46 deleterious(0.02) probably_damaging(0.928) TCGA-CD-A4MG-01 1 26104809 26104809 C T MAN1C1 Missense_Mutation p.R491C 0.08 deleterious(0) probably_damaging(0.993) TCGA-CD-A4MG-01 1 26383771 26383771 C T TRIM63 Missense_Mutation p.G301D 0.20 deleterious(0.03) probably_damaging(1) TCGA-CD-A4MG-01 1 26603868 26603868 T C CEP85 3'UTR 0.48 TCGA-CD-A4MG-01 1 26694188 26694188 G T ZNF683 Missense_Mutation p.A72E 0.27 deleterious(0) possibly_damaging(0.756) TCGA-CD-A4MG-01 1 27240230 27240230 C T NR0B2 Missense_Mutation p.A68T 0.08 tolerated(0.29) benign(0.008) TCGA-CD-A4MG-01 1 27630238 27630238 G A WDTC1 Missense_Mutation p.G531D 0.28 deleterious(0) probably_damaging(0.98) TCGA-CD-A4MG-01 1 27695732 27695732 G A FCN3 Nonsense_Mutation p.R299* 0.39 TCGA-CD-A4MG-01 1 28282613 28282613 C T SMPDL3B Intron 0.16 TCGA-CD-A4MG-01 1 28661116 28661116 C A MED18 Missense_Mutation p.L88M 0.32 tolerated(0.16) benign(0.192) TCGA-CD-A4MG-01 1 2938735 2938735 C T ACTRT2 Missense_Mutation p.A162V 0.24 deleterious(0) benign(0.19) TCGA-CD-A4MG-01 1 29647292 29647292 C A PTPRU Silent p.T1271T 0.28 TCGA-CD-A4MG-01 1 3102700 3102700 G A PRDM16 Missense_Mutation p.V17I 0.29 tolerated_low_confidence(0.62) benign(0.001) TCGA-CD-A4MG-01 1 31845853 31845853 G A FABP3 Silent p.D3D 0.24 TCGA-CD-A4MG-01 1 32050532 32050532 C T TINAGL1 Missense_Mutation p.T251M 0.30 deleterious(0) probably_damaging(0.946) TCGA-CD-A4MG-01 1 33236965 33236965 C - KIAA1522 Frame_Shift_Del p.P730Hfs*145 0.24 TCGA-CD-A4MG-01 1 3395177 3395177 G A ARHGEF16 Splice_Site p.X605_splice 0.15 TCGA-CD-A4MG-01 1 3412517 3412517 A G MEGF6 Missense_Mutation p.C1270R 0.27 deleterious(0) probably_damaging(0.923) TCGA-CD-A4MG-01 1 35578941 35578941 A - ZMYM1 Frame_Shift_Del p.T506Pfs*15 0.28 TCGA-CD-A4MG-01 1 35579555 35579555 G A ZMYM1 Missense_Mutation p.M708I 0.35 tolerated(0.29) benign(0.005) TCGA-CD-A4MG-01 1 35836079 35836080 - A ZMYM4 Frame_Shift_Ins p.I347Nfs*62 0.21 TCGA-CD-A4MG-01 1 36945039 36945039 G A CSF3R Missense_Mutation p.P20L 0.26 deleterious(0.04) benign(0.049) TCGA-CD-A4MG-01 1 37948713 37948713 A T ZC3H12A Missense_Mutation p.D434V 0.15 deleterious(0.03) possibly_damaging(0.475) TCGA-CD-A4MG-01 1 38183978 38183978 G A EPHA10 3'UTR 0.20 TCGA-CD-A4MG-01 1 38265378 38265378 C T MANEAL Missense_Mutation p.R293C 0.24 deleterious(0) benign(0.033) TCGA-CD-A4MG-01 1 38351483 38351483 G A INPP5B Silent p.G382G 0.08 TCGA-CD-A4MG-01 1 39753010 39753010 C A MACF1 Missense_Mutation p.L526M 0.17 probably_damaging(0.977) TCGA-CD-A4MG-01 1 39878979 39878979 C A KIAA0754 Silent p.T878T 0.22 TCGA-CD-A4MG-01 1 39905101 39905101 G A MACF1 Missense_Mutation p.D4067N 0.12 probably_damaging(0.923) TCGA-CD-A4MG-01 1 40105268 40105268 G A HEYL Silent p.S10S 0.33 TCGA-CD-A4MG-01 1 40219091 40219091 C T PPIE Intron 0.25 TCGA-CD-A4MG-01 1 41223946 41223946 G A NFYC Missense_Mutation p.A181T 0.23 deleterious(0.04) probably_damaging(0.993) TCGA-CD-A4MG-01 1 41514425 41514425 C T SCMH1 Missense_Mutation p.A405T 0.16 tolerated(0.09) probably_damaging(0.976) TCGA-CD-A4MG-01 1 42045429 42045429 G A HIVEP3 Silent p.S1680S 0.13 TCGA-CD-A4MG-01 1 42045971 42045971 A G HIVEP3 Missense_Mutation p.S1500P 0.28 benign(0.011) TCGA-CD-A4MG-01 1 43613619 43613619 G T FAM183A 5'Flank 0.22 TCGA-CD-A4MG-01 1 43739149 43739149 C T TMEM125 3'UTR 0.33 TCGA-CD-A4MG-01 1 43803832 43803832 C A MPL Missense_Mutation p.L48I 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-CD-A4MG-01 1 43804224 43804224 G A MPL Missense_Mutation p.R75H 0.10 deleterious(0.01) probably_damaging(0.991) TCGA-CD-A4MG-01 1 43825639 43825639 G A CDC20 Splice_Site p.X143_splice 0.06 TCGA-CD-A4MG-01 1 43917013 43917013 G A HYI Intron 0.11 TCGA-CD-A4MG-01 1 43917430 43917430 G T SZT2 3'UTR 0.24 TCGA-CD-A4MG-01 1 44063524 44063524 C G PTPRF Missense_Mutation p.T640S 0.36 tolerated(0.28) benign(0.217) TCGA-CD-A4MG-01 1 44083479 44083479 C T PTPRF Missense_Mutation p.T1423M 0.27 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 1 45288194 45288194 G - PTCH2 Frame_Shift_Del p.L1169Cfs*85 0.20 TCGA-CD-A4MG-01 1 45288282 45288282 G A PTCH2 Silent p.G1139G 0.26 TCGA-CD-A4MG-01 1 45484137 45484137 G A ZSWIM5 Missense_Mutation p.R1183C 0.21 deleterious(0.01) unknown(0) TCGA-CD-A4MG-01 1 46211986 46211986 C T IPP Missense_Mutation p.G33E 0.10 tolerated(1) benign(0.002) TCGA-CD-A4MG-01 1 46660269 46660270 - C POMGNT1 Frame_Shift_Ins p.D236Gfs*38 0.11 TCGA-CD-A4MG-01 1 46685586 46685586 G A LURAP1 Silent p.R138R 0.30 TCGA-CD-A4MG-01 1 46775925 46775925 A G UQCRH Silent p.R60R 0.27 TCGA-CD-A4MG-01 1 4832521 4832521 G A AJAP1 Missense_Mutation p.V367M 0.25 tolerated(0.07) possibly_damaging(0.569) TCGA-CD-A4MG-01 1 50941256 50941256 G A FAF1 Silent p.G583G 0.28 TCGA-CD-A4MG-01 1 52258067 52258067 C T NRD1 Silent p.T1003T 0.32 TCGA-CD-A4MG-01 1 53122609 53122609 T C FAM159A Missense_Mutation p.L157P 0.30 deleterious(0.03) benign(0.01) TCGA-CD-A4MG-01 1 53974874 53974874 C T GLIS1 Missense_Mutation p.G542R 0.44 tolerated(0.1) benign(0.011) TCGA-CD-A4MG-01 1 54331901 54331901 A T YIPF1 Missense_Mutation p.L268H 0.20 deleterious(0.02) probably_damaging(1) TCGA-CD-A4MG-01 1 55081756 55081757 - G FAM151A Frame_Shift_Ins p.T118Hfs*5 0.32 TCGA-CD-A4MG-01 1 6029244 6029244 G A NPHP4 Missense_Mutation p.R119W 0.25 deleterious(0.02) benign(0.008) TCGA-CD-A4MG-01 1 6100681 6100681 C T AL035406.1 Silent p.P10P 0.10 TCGA-CD-A4MG-01 1 6170003 6170003 C T CHD5 Silent p.A1810A 0.22 TCGA-CD-A4MG-01 1 62979425 62979425 C T DOCK7 Missense_Mutation p.D1330N 0.20 deleterious(0.04) probably_damaging(0.967) TCGA-CD-A4MG-01 1 63113940 63113940 C T DOCK7 Missense_Mutation p.S190N 0.33 deleterious(0) possibly_damaging(0.743) TCGA-CD-A4MG-01 1 64624751 64624753 TCT - ROR1 In_Frame_Del p.F424del 0.09 TCGA-CD-A4MG-01 1 64936594 64936594 C T CACHD1 Missense_Mutation p.A5V 0.14 deleterious(0.02) benign(0.012) TCGA-CD-A4MG-01 1 6585790 6585790 A - NOL9 3'UTR 0.27 TCGA-CD-A4MG-01 1 66102459 66102460 - AG LEPR Frame_Shift_Ins p.S1090Rfs*6 0.15 TCGA-CD-A4MG-01 1 6681758 6681758 C A PHF13 3'UTR 0.44 TCGA-CD-A4MG-01 1 67428798 67428798 G A MIER1 Missense_Mutation p.A243T 0.17 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 1 67795357 67795357 T C IL12RB2 Missense_Mutation p.L251P 0.11 tolerated(0.18) benign(0.005) TCGA-CD-A4MG-01 1 68173335 68173335 G A GNG12 Missense_Mutation p.A12V 0.24 tolerated(0.28) benign(0.018) TCGA-CD-A4MG-01 1 68512564 68512564 A G DIRAS3 Silent p.G139G 0.26 TCGA-CD-A4MG-01 1 68948218 68948218 C A DEPDC1 Nonsense_Mutation p.G425* 0.16 TCGA-CD-A4MG-01 1 74621423 74621423 T - LRRIQ3 Frame_Shift_Del p.N234Ifs*2 0.16 TCGA-CD-A4MG-01 1 75188879 75188879 G A CRYZ Missense_Mutation p.P63S 0.35 deleterious(0.04) benign(0.131) TCGA-CD-A4MG-01 1 76259894 76259894 A G RABGGTB Silent p.G277G 0.31 TCGA-CD-A4MG-01 1 8420244 8420244 G - RERE Frame_Shift_Del p.P1108Lfs*149 0.37 TCGA-CD-A4MG-01 1 8420748 8420748 G A RERE Missense_Mutation p.P940L 0.28 unknown(0) TCGA-CD-A4MG-01 1 8422838 8422838 T C RERE Missense_Mutation p.N603D 0.19 possibly_damaging(0.824) TCGA-CD-A4MG-01 1 86173881 86173881 G A ZNHIT6 Silent p.G29G 0.30 TCGA-CD-A4MG-01 1 86203186 86203186 T G COL24A1 Missense_Mutation p.K1559Q 0.18 tolerated(0.12) possibly_damaging(0.876) TCGA-CD-A4MG-01 1 86554876 86554876 G - COL24A1 Frame_Shift_Del p.P563Lfs*42 0.14 TCGA-CD-A4MG-01 1 86622164 86622164 A - COL24A1 5'UTR 0.20 TCGA-CD-A4MG-01 1 86920993 86920993 A G CLCA2 Missense_Mutation p.N872S 0.20 tolerated(0.64) benign(0.007) TCGA-CD-A4MG-01 1 86965770 86965770 T - CLCA1 3'UTR 0.59 TCGA-CD-A4MG-01 1 92707843 92707843 A G C1orf146 Silent p.S47S 0.31 TCGA-CD-A4MG-01 1 94342778 94342778 T C DNTTIP2 Missense_Mutation p.D238G 0.38 tolerated(0.06) possibly_damaging(0.731) TCGA-CD-A4MG-01 1 95290148 95290148 G A SLC44A3 Missense_Mutation p.V79M 0.25 deleterious(0.02) probably_damaging(0.956) TCGA-CD-A4MG-01 1 95363514 95363514 C A CNN3 Missense_Mutation p.M258I 0.26 deleterious(0.01) probably_damaging(0.93) TCGA-CD-A4MG-01 1 9657106 9657106 G A TMEM201 Missense_Mutation p.E142K 0.13 tolerated(0.05) benign(0.419) TCGA-CD-A4MG-01 1 977462 977462 C T AGRN Missense_Mutation p.T435M 0.20 deleterious(0) probably_damaging(0.938) TCGA-CD-A4MG-01 1 979585 979585 A C AGRN Missense_Mutation p.E699A 0.25 deleterious(0) possibly_damaging(0.678) TCGA-CD-A4MG-01 1 9990283 9990283 G A LZIC 3'UTR 0.38 TCGA-CD-A4MG-01 20 1285934 1285934 G A SNPH Missense_Mutation p.A241T 0.21 deleterious(0.04) benign(0.005) TCGA-CD-A4MG-01 20 16721663 16721663 T C SNRPB2 3'UTR 0.16 TCGA-CD-A4MG-01 20 17617291 17617291 C T RRBP1 Silent p.T323T 0.20 TCGA-CD-A4MG-01 20 17639379 17639379 C T RRBP1 Intron 0.12 TCGA-CD-A4MG-01 20 18123235 18123235 C A CSRP2BP 5'UTR 0.76 TCGA-CD-A4MG-01 20 19665750 19665750 A T SLC24A3 Nonsense_Mutation p.R357* 0.59 TCGA-CD-A4MG-01 20 20453589 20453589 A - RALGAPA2 Frame_Shift_Del p.F1793Lfs*9 0.21 TCGA-CD-A4MG-01 20 21307218 21307218 C A XRN2 Silent p.L98L 0.58 TCGA-CD-A4MG-01 20 21687127 21687127 G A PAX1 Missense_Mutation p.R113H 0.18 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 20 21689942 21689942 C - PAX1 Frame_Shift_Del p.P382Rfs*27 0.19 TCGA-CD-A4MG-01 20 22563630 22563630 C A FOXA2 Missense_Mutation p.A84S 0.12 tolerated(0.12) benign(0.081) TCGA-CD-A4MG-01 20 2474218 2474218 G A ZNF343 Missense_Mutation p.P42S 0.13 tolerated(1) benign(0) TCGA-CD-A4MG-01 20 25187205 25187205 A - ENTPD6 Frame_Shift_Del p.T13Rfs*17 0.18 TCGA-CD-A4MG-01 20 25259723 25259723 G A PYGB Missense_Mutation p.A344T 0.11 tolerated(0.11) possibly_damaging(0.856) TCGA-CD-A4MG-01 20 25462724 25462724 G A NINL Missense_Mutation p.R564C 0.14 tolerated(0.08) benign(0.022) TCGA-CD-A4MG-01 20 2796244 2796244 C T C20orf141 Silent p.A107A 0.16 TCGA-CD-A4MG-01 20 3016331 3016331 G A PTPRA Missense_Mutation p.R674Q 0.11 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 20 30729426 30729426 G A TM9SF4 Missense_Mutation p.R119Q 0.25 tolerated(0.13) benign(0.005) TCGA-CD-A4MG-01 20 30904370 30904370 G A KIF3B Missense_Mutation p.R516Q 0.16 tolerated(1) benign(0.007) TCGA-CD-A4MG-01 20 31376725 31376725 C A DNMT3B Silent p.P240P 0.22 TCGA-CD-A4MG-01 20 3147499 3147499 C T LZTS3 Missense_Mutation p.R104Q 0.24 tolerated(0.22) possibly_damaging(0.885) TCGA-CD-A4MG-01 20 3147675 3147675 G T LZTS3 Silent p.A45A 0.17 TCGA-CD-A4MG-01 20 31980017 31980017 A G CDK5RAP1 Silent p.L159L 0.10 TCGA-CD-A4MG-01 20 33030037 33030037 C T ITCH Silent p.H339H 0.36 TCGA-CD-A4MG-01 20 34084485 34084485 A G CEP250 Missense_Mutation p.S1083G 0.53 benign(0.209) TCGA-CD-A4MG-01 20 34208807 34208807 C T SPAG4 Missense_Mutation p.P393S 0.14 tolerated(0.31) probably_damaging(1) TCGA-CD-A4MG-01 20 34241803 34241803 T G RBM12 Missense_Mutation p.E481A 0.41 tolerated(0.09) probably_damaging(0.981) TCGA-CD-A4MG-01 20 34435307 34435307 G A PHF20 Nonsense_Mutation p.W97* 0.10 TCGA-CD-A4MG-01 20 35075283 35075283 C T DLGAP4 Nonsense_Mutation p.Q531* 0.17 TCGA-CD-A4MG-01 20 35444037 35444037 C T SOGA1 Missense_Mutation p.R603H 0.37 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 20 35627182 35627182 T G RBL1 Missense_Mutation p.S1063R 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-CD-A4MG-01 20 36627613 36627613 G - TTI1 Frame_Shift_Del p.L924Wfs*37 0.25 TCGA-CD-A4MG-01 20 36767984 36767984 G T TGM2 Missense_Mutation p.P391H 0.18 deleterious(0) probably_damaging(0.964) TCGA-CD-A4MG-01 20 37378728 37378728 C T ACTR5 Missense_Mutation p.L151F 0.08 deleterious(0.03) benign(0.376) TCGA-CD-A4MG-01 20 3739308 3739308 G A C20orf27 Missense_Mutation p.R38W 0.55 deleterious(0.02) benign(0.059) TCGA-CD-A4MG-01 20 3869793 3869793 C G PANK2 Missense_Mutation p.P16A 0.50 tolerated_low_confidence(0.38) benign(0.002) TCGA-CD-A4MG-01 20 39791294 39791294 C T PLCG1 Missense_Mutation p.R204C 0.26 deleterious(0) probably_damaging(0.953) TCGA-CD-A4MG-01 20 39987432 39987432 G A LPIN3 Missense_Mutation p.A828T 0.46 tolerated(0.22) benign(0.001) TCGA-CD-A4MG-01 20 40739003 40739003 G - PTPRT Frame_Shift_Del p.P1075Rfs*6 0.26 TCGA-CD-A4MG-01 20 409696 409696 C A RBCK1 Silent p.T470T 0.22 TCGA-CD-A4MG-01 20 4158114 4158114 G A SMOX Missense_Mutation p.V109M 0.26 deleterious(0.04) possibly_damaging(0.888) TCGA-CD-A4MG-01 20 42159475 42159475 G A L3MBTL1 Silent p.L388L 0.46 TCGA-CD-A4MG-01 20 42159476 42159476 C A L3MBTL1 Missense_Mutation p.R389S 0.46 deleterious(0) possibly_damaging(0.648) TCGA-CD-A4MG-01 20 42311496 42311496 G T MYBL2 Missense_Mutation p.K83N 0.18 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 20 42315578 42315578 T C MYBL2 Silent p.R122R 0.21 TCGA-CD-A4MG-01 20 42320926 42320926 C T MYBL2 Silent p.D210D 0.39 TCGA-CD-A4MG-01 20 43355771 43355771 C - WISP2 Frame_Shift_Del p.C194Afs*108 0.29 TCGA-CD-A4MG-01 20 43739149 43739149 G A WFDC5 Missense_Mutation p.R87C 0.25 deleterious(0) probably_damaging(0.98) TCGA-CD-A4MG-01 20 44258522 44258522 C T WFDC10A Missense_Mutation p.R24C 0.26 deleterious(0.03) possibly_damaging(0.876) TCGA-CD-A4MG-01 20 44511611 44511611 A G ZSWIM1 Missense_Mutation p.Q127R 0.07 tolerated(0.36) benign(0.022) TCGA-CD-A4MG-01 20 44596969 44596969 C A ZNF335 Missense_Mutation p.G159W 0.08 deleterious(0) possibly_damaging(0.822) TCGA-CD-A4MG-01 20 44839080 44839080 G A CDH22 Silent p.A384A 0.36 TCGA-CD-A4MG-01 20 45239100 45239100 T G SLC13A3 Missense_Mutation p.S176R 0.47 tolerated(0.27) benign(0.008) TCGA-CD-A4MG-01 20 46265203 46265203 T C NCOA3 Silent p.N691N 0.20 TCGA-CD-A4MG-01 20 49209604 49209604 A G FAM65C Missense_Mutation p.L777P 0.41 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MG-01 20 50400982 50400983 - C SALL4 Frame_Shift_Ins p.V995Gfs*16 0.34 TCGA-CD-A4MG-01 20 50407921 50407921 G A SALL4 Silent p.S367S 0.17 TCGA-CD-A4MG-01 20 54824308 54824308 G A MC3R Missense_Mutation p.A137T 0.30 tolerated(0.11) possibly_damaging(0.889) TCGA-CD-A4MG-01 20 54824600 54824600 A G MC3R Missense_Mutation p.Q234R 0.22 tolerated(0.16) possibly_damaging(0.677) TCGA-CD-A4MG-01 20 54978601 54978601 G A CSTF1 Missense_Mutation p.D372N 0.23 deleterious(0) possibly_damaging(0.569) TCGA-CD-A4MG-01 20 56179585 56179585 C T ZBP1 3'UTR 0.22 TCGA-CD-A4MG-01 20 57042694 57042694 G T APCDD1L Missense_Mutation p.P70Q 0.51 deleterious(0) probably_damaging(0.984) TCGA-CD-A4MG-01 20 57429596 57429596 G A GNAS Missense_Mutation p.A426T 0.27 tolerated_low_confidence(0.36) unknown(0) TCGA-CD-A4MG-01 20 57766741 57766741 C - ZNF831 Frame_Shift_Del p.R225Dfs*37 0.15 TCGA-CD-A4MG-01 20 57768027 57768027 C T ZNF831 Silent p.G651G 0.24 TCGA-CD-A4MG-01 20 57829279 57829279 C A ZNF831 Silent p.A1505A 0.45 TCGA-CD-A4MG-01 20 58514123 58514123 G A PPP1R3D Silent p.R288R 0.16 TCGA-CD-A4MG-01 20 58564020 58564020 G T CDH26 Missense_Mutation p.R362M 0.26 deleterious(0.03) benign(0.29) TCGA-CD-A4MG-01 20 60499482 60499482 C T CDH4 Silent p.S573S 0.15 TCGA-CD-A4MG-01 20 60988592 60988592 G A RBBP8NL Missense_Mutation p.R514C 0.23 tolerated(0.27) benign(0.001) TCGA-CD-A4MG-01 20 61299422 61299422 C T SLCO4A1 Missense_Mutation p.T566I 0.25 tolerated(0.28) benign(0.081) TCGA-CD-A4MG-01 20 61431073 61431073 C - MRGBP 3'UTR 0.40 TCGA-CD-A4MG-01 20 61452876 61452877 - C COL9A3 Frame_Shift_Ins p.G124Rfs*44 0.27 TCGA-CD-A4MG-01 20 61512878 61512878 T G DIDO1 Missense_Mutation p.K1477T 0.29 possibly_damaging(0.698) TCGA-CD-A4MG-01 20 61595602 61595602 C A SLC17A9 Missense_Mutation p.P282H 0.17 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 20 61958164 61958164 G A COL20A1 Missense_Mutation p.V1173M 0.40 deleterious(0.03) probably_damaging(0.999) TCGA-CD-A4MG-01 20 62153073 62153073 G A PPDPF Silent p.K62K 0.10 TCGA-CD-A4MG-01 20 62560749 62560749 C T DNAJC5 Silent p.H64H 0.23 TCGA-CD-A4MG-01 20 62631096 62631096 C T PRPF6 Missense_Mutation p.T336M 0.18 deleterious(0) benign(0.347) TCGA-CD-A4MG-01 20 62701542 62701542 C - TCEA2 Intron 0.22 TCGA-CD-A4MG-01 20 62729757 62729757 C T OPRL1 Missense_Mutation p.R240W 0.21 deleterious(0.02) probably_damaging(0.93) TCGA-CD-A4MG-01 20 62891437 62891437 A G PCMTD2 Missense_Mutation p.D40G 0.08 deleterious(0.03) benign(0.141) TCGA-CD-A4MG-01 20 8609002 8609002 T A PLCB1 Missense_Mutation p.I103N 0.59 deleterious(0) benign(0.285) TCGA-CD-A4MG-01 20 8862538 8862538 C T PLCB1 3'UTR 0.11 TCGA-CD-A4MG-01 21 18981461 18981462 - T BTG3 Frame_Shift_Ins p.M1? 0.19 TCGA-CD-A4MG-01 21 19653414 19653414 G A TMPRSS15 Nonsense_Mutation p.R871* 0.30 TCGA-CD-A4MG-01 21 30338713 30338713 T - LTN1 Frame_Shift_Del p.V747Sfs*5 0.33 TCGA-CD-A4MG-01 21 30419571 30419571 G A USP16 Missense_Mutation p.R647Q 0.28 tolerated(0.12) benign(0.025) TCGA-CD-A4MG-01 21 30699050 30699050 A - BACH1 Frame_Shift_Del p.K303Nfs*4 0.21 TCGA-CD-A4MG-01 21 31973469 31973469 C T KRTAP22-1 Silent p.G10G 0.11 TCGA-CD-A4MG-01 21 32185260 32185260 T G KRTAP8-1 3'UTR 0.19 TCGA-CD-A4MG-01 21 33074655 33074655 T - SCAF4 Frame_Shift_Del p.N120Mfs*25 0.24 TCGA-CD-A4MG-01 21 33887121 33887121 C T EVA1C Intron 0.32 TCGA-CD-A4MG-01 21 34931665 34931666 - T SON Frame_Shift_Ins p.N2154Qfs*37 0.08 TCGA-CD-A4MG-01 21 37741774 37741774 T C MORC3 Missense_Mutation p.L703P 0.29 deleterious(0) probably_damaging(0.993) TCGA-CD-A4MG-01 21 38114120 38114120 G A SIM2 Missense_Mutation p.R318H 0.32 deleterious(0) probably_damaging(0.993) TCGA-CD-A4MG-01 21 40670383 40670383 C T BRWD1 Silent p.R108R 0.37 TCGA-CD-A4MG-01 21 41032852 41032852 G A B3GALT5 Silent p.K122K 0.28 TCGA-CD-A4MG-01 21 41137483 41137483 T C IGSF5 Missense_Mutation p.V41A 0.12 deleterious(0) possibly_damaging(0.872) TCGA-CD-A4MG-01 21 41516473 41516473 G A DSCAM Silent p.N1068N 0.25 TCGA-CD-A4MG-01 21 42615331 42615331 A G BACE2 Missense_Mutation p.Y259C 0.33 deleterious(0) probably_damaging(0.998) TCGA-CD-A4MG-01 21 43325851 43325851 G T C2CD2 Missense_Mutation p.L472I 0.21 deleterious(0.03) benign(0.345) TCGA-CD-A4MG-01 21 43786578 43786578 G - TFF1 Frame_Shift_Del p.C10Afs*86 0.18 TCGA-CD-A4MG-01 21 45507599 45507599 G A TRAPPC10 Silent p.A853A 0.21 TCGA-CD-A4MG-01 21 45821688 45821688 G A TRPM2 Missense_Mutation p.V816M 0.33 deleterious(0.05) possibly_damaging(0.87) TCGA-CD-A4MG-01 21 45994758 45994758 G A KRTAP10-4 Missense_Mutation p.V375M 0.07 deleterious(0.05) unknown(0) TCGA-CD-A4MG-01 21 46640907 46640907 G A ADARB1 Missense_Mutation p.R675H 0.35 deleterious(0.05) probably_damaging(0.991) TCGA-CD-A4MG-01 21 46945824 46945824 G A SLC19A1 Silent p.F400F 0.25 TCGA-CD-A4MG-01 21 47533969 47533969 G T COL6A2 Missense_Mutation p.K261N 0.32 tolerated(0.06) possibly_damaging(0.856) TCGA-CD-A4MG-01 21 47647501 47647501 G A LSS Missense_Mutation p.T95M 0.36 deleterious(0) possibly_damaging(0.576) TCGA-CD-A4MG-01 21 47808673 47808673 G A PCNT Missense_Mutation p.A1161T 0.15 benign(0) TCGA-CD-A4MG-01 21 48081770 48081770 C T PRMT2 Missense_Mutation p.T340M 0.22 deleterious(0.01) probably_damaging(0.961) TCGA-CD-A4MG-01 22 17600853 17600853 G A CECR6 Missense_Mutation p.R389W 0.23 tolerated(0.14) benign(0.003) TCGA-CD-A4MG-01 22 18363980 18363980 G A MICAL3 Intron 0.10 TCGA-CD-A4MG-01 22 18604278 18604278 G A TUBA8 Silent p.A12A 0.26 TCGA-CD-A4MG-01 22 19211489 19211489 C T CLTCL1 Silent p.G739G 0.20 TCGA-CD-A4MG-01 22 20096520 20096520 G T DGCR8 Missense_Mutation p.E744D 0.29 tolerated(0.34) benign(0.021) TCGA-CD-A4MG-01 22 21101908 21101908 T C PI4KA Missense_Mutation p.H1109R 0.20 tolerated(0.43) benign(0.005) TCGA-CD-A4MG-01 22 21272475 21272475 C T CRKL Silent p.L85L 0.20 TCGA-CD-A4MG-01 22 21377608 21377608 G A P2RX6 Missense_Mutation p.C228Y 0.24 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 22 21989564 21989564 C A CCDC116 Intron 0.15 TCGA-CD-A4MG-01 22 22677261 22677261 G A IGLV1-51 Missense_Mutation p.G97R 0.28 deleterious(0.04) possibly_damaging(0.875) TCGA-CD-A4MG-01 22 23243494 23248852 22:23243494-23248852 - IGLJ3 large deletion 0.10 TCGA-CD-A4MG-01 22 25270530 25270530 G A SGSM1 Silent p.P480P 0.33 TCGA-CD-A4MG-01 22 26888384 26888384 G T SRRD 3'UTR 0.09 TCGA-CD-A4MG-01 22 28193903 28193903 C G MN1 Missense_Mutation p.D877H 0.34 probably_damaging(0.974) TCGA-CD-A4MG-01 22 28194198 28194198 G A MN1 Silent p.G778G 0.44 TCGA-CD-A4MG-01 22 29707852 29707852 C - GAS2L1 3'UTR 0.31 TCGA-CD-A4MG-01 22 30134378 30134378 G A ZMAT5 Silent p.G108G 0.28 TCGA-CD-A4MG-01 22 30421933 30421933 T C MTMR3 3'UTR 0.31 TCGA-CD-A4MG-01 22 30769736 30769736 C A CCDC157 Missense_Mutation p.Q496K 0.56 deleterious(0.03) probably_damaging(0.968) TCGA-CD-A4MG-01 22 30951876 30951876 G A GAL3ST1 Silent p.R112R 0.24 TCGA-CD-A4MG-01 22 31487368 31487369 - G SMTN Frame_Shift_Ins p.S456Qfs*48 0.24 TCGA-CD-A4MG-01 22 32269303 32269303 C T DEPDC5 Missense_Mutation p.A1174V 0.27 tolerated(0.07) probably_damaging(0.998) TCGA-CD-A4MG-01 22 32495184 32495184 T C SLC5A1 Missense_Mutation p.V432A 0.20 tolerated(0.17) benign(0.026) TCGA-CD-A4MG-01 22 32548060 32548060 C T C22orf42 Missense_Mutation p.D132N 0.22 tolerated_low_confidence(1) benign(0) TCGA-CD-A4MG-01 22 32794006 32794006 T - RTCB Frame_Shift_Del p.M246Wfs*11 0.20 TCGA-CD-A4MG-01 22 36623406 36623406 C T APOL2 3'UTR 0.17 TCGA-CD-A4MG-01 22 36681702 36681702 A G MYH9 Splice_Site p.X1758_splice 0.12 TCGA-CD-A4MG-01 22 36708245 36708245 G A MYH9 Missense_Mutation p.A526V 0.09 probably_damaging(0.909) TCGA-CD-A4MG-01 22 37962639 37962639 C - CDC42EP1 Frame_Shift_Del p.R97Gfs*115 0.27 TCGA-CD-A4MG-01 22 38121772 38121772 C - TRIOBP Frame_Shift_Del p.R1072Gfs*141 0.12 TCGA-CD-A4MG-01 22 38130773 38130773 G - TRIOBP Frame_Shift_Del p.G1479Afs*28 0.21 TCGA-CD-A4MG-01 22 38154010 38154010 C T TRIOBP Silent p.I2026I 0.22 TCGA-CD-A4MG-01 22 38341135 38341135 G A C22orf23 Missense_Mutation p.T132I 0.26 deleterious(0.01) possibly_damaging(0.493) TCGA-CD-A4MG-01 22 38512189 38512189 C T PLA2G6 Missense_Mutation p.R591Q 0.25 deleterious(0) probably_damaging(0.998) TCGA-CD-A4MG-01 22 38823565 38823565 C T KCNJ4 Silent p.A191A 0.25 TCGA-CD-A4MG-01 22 38897211 38897211 T - DDX17 Frame_Shift_Del p.K121Sfs*4 0.41 TCGA-CD-A4MG-01 22 39263009 39263009 C T CBX6 Silent p.P148P 0.14 TCGA-CD-A4MG-01 22 39883971 39883971 C A MGAT3 Missense_Mutation p.R207S 0.27 tolerated(0.08) possibly_damaging(0.662) TCGA-CD-A4MG-01 22 40660971 40660971 A G TNRC6B Missense_Mutation p.Q246R 0.08 tolerated(0.1) benign(0.199) TCGA-CD-A4MG-01 22 41195058 41195058 A - SLC25A17 Frame_Shift_Del p.L30Wfs*42 0.31 TCGA-CD-A4MG-01 22 41601335 41601335 C T L3MBTL2 5'UTR 0.29 TCGA-CD-A4MG-01 22 41650405 41650405 T C RANGAP1 Silent p.E389E 0.27 TCGA-CD-A4MG-01 22 41670616 41670618 CTT - RANGAP1 In_Frame_Del p.K76del 0.25 TCGA-CD-A4MG-01 22 41920923 41920923 G A ACO2 Missense_Mutation p.G519D 0.33 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CD-A4MG-01 22 42908268 42908268 C A RRP7A 3'UTR 0.29 TCGA-CD-A4MG-01 22 43287156 43287156 T C PACSIN2 Missense_Mutation p.M84V 0.24 tolerated(0.53) benign(0) TCGA-CD-A4MG-01 22 45309721 45309721 G - PHF21B Frame_Shift_Del p.P271Rfs*13 0.23 TCGA-CD-A4MG-01 22 46786291 46786291 T C CELSR1 Missense_Mutation p.M2115V 0.41 tolerated(0.22) benign(0.008) TCGA-CD-A4MG-01 22 46859850 46859850 C T CELSR1 Missense_Mutation p.E1313K 0.08 tolerated(0.11) probably_damaging(0.998) TCGA-CD-A4MG-01 22 50515292 50515292 G A MLC1 Missense_Mutation p.A192V 0.30 deleterious_low_confidence(0.03) probably_damaging(0.995) TCGA-CD-A4MG-01 22 50647129 50647129 C T SELO Missense_Mutation p.A308V 0.25 tolerated(0.88) benign(0.01) TCGA-CD-A4MG-01 22 50657858 50657858 C T TUBGCP6 Missense_Mutation p.R1448H 0.21 tolerated(1) benign(0.002) TCGA-CD-A4MG-01 22 50728801 50728801 C T PLXNB2 Silent p.P71P 0.21 TCGA-CD-A4MG-01 22 50750553 50750553 G A DENND6B 3'UTR 0.40 TCGA-CD-A4MG-01 22 50987889 50987889 G A KLHDC7B Missense_Mutation p.A432T 0.30 deleterious(0.02) probably_damaging(0.981) TCGA-CD-A4MG-01 22 51015879 51015880 - A CPT1B Frame_Shift_Ins p.R52Mfs*89 0.09 TCGA-CD-A4MG-01 2 100210285 100210285 G A AFF3 Missense_Mutation p.A638V 0.39 tolerated(0.22) benign(0.049) TCGA-CD-A4MG-01 2 10095050 10095050 G C GRHL1 Silent p.R9R 0.38 TCGA-CD-A4MG-01 2 101185442 101185442 C T PDCL3 Silent p.D61D 0.09 TCGA-CD-A4MG-01 2 101885877 101885877 A G CNOT11 3'UTR 0.20 TCGA-CD-A4MG-01 2 102486131 102486131 G A MAP4K4 Silent p.R756R 0.27 TCGA-CD-A4MG-01 2 102641109 102641109 G A IL1R2 Missense_Mutation p.R289H 0.23 deleterious(0) probably_damaging(0.991) TCGA-CD-A4MG-01 2 10580724 10580724 A G ODC1 3'UTR 0.63 TCGA-CD-A4MG-01 2 105990123 105990123 A G FHL2 Missense_Mutation p.L75P 0.25 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 2 106471695 106471695 A C NCK2 Missense_Mutation p.K59T 0.21 tolerated(0.06) probably_damaging(0.994) TCGA-CD-A4MG-01 2 106497875 106497875 C T NCK2 Silent p.A106A 0.26 TCGA-CD-A4MG-01 2 108604753 108604753 G T SLC5A7 Missense_Mutation p.D48Y 0.27 deleterious(0) benign(0.319) TCGA-CD-A4MG-01 2 109411082 109411082 T G CCDC138 Missense_Mutation p.C161G 0.22 tolerated(0.33) benign(0.002) TCGA-CD-A4MG-01 2 110373120 110373120 G A SOWAHC Missense_Mutation p.G352S 0.37 tolerated(0.09) probably_damaging(0.964) TCGA-CD-A4MG-01 2 11052924 11052924 C T KCNF1 Silent p.D124D 0.29 TCGA-CD-A4MG-01 2 111399006 111399006 T - BUB1 Frame_Shift_Del p.V888* 0.21 TCGA-CD-A4MG-01 2 112865400 112865400 C A TMEM87B Silent p.P520P 0.20 TCGA-CD-A4MG-01 2 113951497 113951497 G A PSD4 Missense_Mutation p.G718D 0.20 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 2 118582216 118582216 A - DDX18 Frame_Shift_Del p.K381Rfs*58 0.19 TCGA-CD-A4MG-01 2 11905731 11905731 C T LPIN1 Silent p.L71L 0.32 TCGA-CD-A4MG-01 2 119726815 119726815 C T MARCO Silent p.G59G 0.14 TCGA-CD-A4MG-01 2 120005392 120005392 G A STEAP3 Silent p.P220P 0.43 TCGA-CD-A4MG-01 2 120849180 120849180 A G EPB41L5 Missense_Mutation p.T365A 0.21 tolerated(1) benign(0.004) TCGA-CD-A4MG-01 2 121684974 121684974 A G GLI2 Silent p.L62L 0.24 TCGA-CD-A4MG-01 2 121742161 121742161 C T GLI2 Missense_Mutation p.R600C 0.27 deleterious(0) probably_damaging(0.997) TCGA-CD-A4MG-01 2 125660579 125660579 T C CNTNAP5 Missense_Mutation p.V1185A 0.34 tolerated(0.66) benign(0.003) TCGA-CD-A4MG-01 2 128186274 128186274 A G PROC Missense_Mutation p.M380V 0.08 tolerated(0.31) benign(0) TCGA-CD-A4MG-01 2 128409243 128409243 C T GPR17 Missense_Mutation p.L340F 0.26 tolerated(0.76) benign(0.004) TCGA-CD-A4MG-01 2 128477600 128477600 G A WDR33 Missense_Mutation p.R667W 0.20 deleterious_low_confidence(0.02) unknown(0) TCGA-CD-A4MG-01 2 132241709 132241709 C T MZT2A Missense_Mutation p.M134I 0.18 tolerated(0.14) benign(0.039) TCGA-CD-A4MG-01 2 133427493 133427493 C A LYPD1 Missense_Mutation p.G5C 0.20 tolerated_low_confidence(0.08) probably_damaging(0.998) TCGA-CD-A4MG-01 2 135988450 135988450 T C ZRANB3 Silent p.Q529Q 0.49 TCGA-CD-A4MG-01 2 136566784 136566784 A G LCT Missense_Mutation p.Y1045H 0.26 deleterious(0) probably_damaging(0.998) TCGA-CD-A4MG-01 2 137928468 137928468 G T THSD7B Silent p.L561L 0.23 TCGA-CD-A4MG-01 2 141115623 141115624 - T LRP1B Frame_Shift_Ins p.C3774Mfs*9 0.23 TCGA-CD-A4MG-01 2 141660497 141660497 G A LRP1B Missense_Mutation p.T1253I 0.29 possibly_damaging(0.507) TCGA-CD-A4MG-01 2 149987451 149987451 T C LYPD6B 5'UTR 0.23 TCGA-CD-A4MG-01 2 152490245 152490245 A G NEB Missense_Mutation p.Y3113H 0.14 benign(0.012) TCGA-CD-A4MG-01 2 152534219 152534219 C T NEB Missense_Mutation p.D1212N 0.16 possibly_damaging(0.781) TCGA-CD-A4MG-01 2 152695797 152695797 C T CACNB4 Missense_Mutation p.A467T 0.12 tolerated_low_confidence(0.2) benign(0.149) TCGA-CD-A4MG-01 2 153526849 153526849 T - PRPF40A Frame_Shift_Del p.N509Tfs*9 0.16 TCGA-CD-A4MG-01 2 157182439 157182439 G A NR4A2 Silent p.H538H 0.25 TCGA-CD-A4MG-01 2 157185040 157185040 T G NR4A2 Silent p.T290T 0.45 TCGA-CD-A4MG-01 2 15746096 15746096 T C DDX1 Silent p.F216F 0.17 TCGA-CD-A4MG-01 2 158272539 158272539 T G CYTIP Missense_Mutation p.S244R 0.33 deleterious(0.03) possibly_damaging(0.888) TCGA-CD-A4MG-01 2 159481597 159481597 G A PKP4 Missense_Mutation p.A271T 0.35 tolerated(0.1) benign(0.211) TCGA-CD-A4MG-01 2 160206342 160206342 A C BAZ2B Silent p.T1580T 0.21 TCGA-CD-A4MG-01 2 162849888 162849888 T C DPP4 Missense_Mutation p.T736A 0.21 deleterious(0.04) benign(0.129) TCGA-CD-A4MG-01 2 163228379 163228379 A C KCNH7 Missense_Mutation p.L1184R 0.29 deleterious_low_confidence(0) probably_damaging(0.959) TCGA-CD-A4MG-01 2 163374321 163374321 G A KCNH7 Missense_Mutation p.R271W 0.14 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MG-01 2 164467542 164467543 - C FIGN Frame_Shift_Ins p.A267Gfs*100 0.29 TCGA-CD-A4MG-01 2 164467697 164467697 A G FIGN Silent p.H215H 0.37 TCGA-CD-A4MG-01 2 164468131 164468132 - T FIGN Frame_Shift_Ins p.Y71Ifs*35 0.23 TCGA-CD-A4MG-01 2 1652960 1652960 G - PXDN Frame_Shift_Del p.N865Mfs*25 0.30 TCGA-CD-A4MG-01 2 165353943 165353944 CT - GRB14 Frame_Shift_Del p.R387Sfs*7 0.24 TCGA-CD-A4MG-01 2 165365340 165365340 A - GRB14 Frame_Shift_Del p.F280Sfs*40 0.19 TCGA-CD-A4MG-01 2 165754992 165754992 C T SLC38A11 Silent p.Q392Q 0.12 TCGA-CD-A4MG-01 2 166848647 166848647 C A SCN1A Missense_Mutation p.S1713I 0.12 deleterious(0) probably_damaging(0.992) TCGA-CD-A4MG-01 2 166894520 166894520 A - SCN1A Frame_Shift_Del p.F904Lfs*31 0.21 TCGA-CD-A4MG-01 2 166894547 166894547 G A SCN1A Silent p.L895L 0.29 TCGA-CD-A4MG-01 2 167760318 167760318 G A XIRP2 Missense_Mutation p.R109H 0.27 benign(0.036) TCGA-CD-A4MG-01 2 168103103 168103103 A C XIRP2 Missense_Mutation p.K1734T 0.31 probably_damaging(0.972) TCGA-CD-A4MG-01 2 168110607 168110607 C T XIRP2 Missense_Mutation p.P3541S 0.28 benign(0.167) TCGA-CD-A4MG-01 2 170103435 170103435 C T LRP2 Silent p.P990P 0.26 TCGA-CD-A4MG-01 2 170112738 170112738 C T LRP2 Missense_Mutation p.R883Q 0.21 probably_damaging(0.954) TCGA-CD-A4MG-01 2 171573716 171573716 C T SP5 Silent p.C333C 0.24 TCGA-CD-A4MG-01 2 171853207 171853207 C A TLK1 Nonsense_Mutation p.E694* 0.20 TCGA-CD-A4MG-01 2 172950494 172950494 T C DLX1 Missense_Mutation p.M30T 0.07 tolerated(0.25) benign(0.019) TCGA-CD-A4MG-01 2 173335732 173335733 - T ITGA6 Frame_Shift_Ins p.D228* 0.38 TCGA-CD-A4MG-01 2 173339813 173339813 A - ITGA6 Frame_Shift_Del p.N383Ifs*35 0.26 TCGA-CD-A4MG-01 2 176965308 176965308 G A HOXD12 Silent p.K211K 0.26 TCGA-CD-A4MG-01 2 176987685 176987685 C T HOXD9 Silent p.F63F 0.24 TCGA-CD-A4MG-01 2 176988179 176988179 C T HOXD9 Missense_Mutation p.A228V 0.38 tolerated(0.31) benign(0.001) TCGA-CD-A4MG-01 2 176995417 176995417 C - HOXD8 Frame_Shift_Del p.P110Lfs*67 0.27 TCGA-CD-A4MG-01 2 179193015 179193016 - A OSBPL6 Frame_Shift_Ins p.I78Nfs*13 0.12 TCGA-CD-A4MG-01 2 179398978 179398978 C A TTN Nonsense_Mutation p.G34122* 0.34 TCGA-CD-A4MG-01 2 179404476 179404476 A C TTN Silent p.T32772T 0.31 TCGA-CD-A4MG-01 2 179497513 179497513 G T TTN Missense_Mutation p.P14407H 0.25 TCGA-CD-A4MG-01 2 179596093 179596093 A G TTN Silent p.Y5800Y 0.22 TCGA-CD-A4MG-01 2 182403983 182403983 A - CERKL Frame_Shift_Del p.P485Hfs*11 0.19 TCGA-CD-A4MG-01 2 182784161 182784161 C A SSFA2 Silent p.S1044S 0.32 TCGA-CD-A4MG-01 2 183730898 183730898 T C FRZB Missense_Mutation p.H128R 0.30 deleterious(0.02) probably_damaging(0.986) TCGA-CD-A4MG-01 2 185803770 185803770 A - ZNF804A 3'UTR 0.22 TCGA-CD-A4MG-01 2 186670036 186670037 - A FSIP2 Frame_Shift_Ins p.M5426Nfs*8 0.14 TCGA-CD-A4MG-01 2 186673387 186673387 A - FSIP2 Frame_Shift_Del p.V6543Wfs*4 0.15 TCGA-CD-A4MG-01 2 189904121 189904121 C T COL5A2 Missense_Mutation p.V1268I 0.20 unknown(0) TCGA-CD-A4MG-01 2 190620089 190620089 T - OSGEPL1 Frame_Shift_Del p.K140Sfs*18 0.26 TCGA-CD-A4MG-01 2 196834715 196834715 T - DNAH7 Frame_Shift_Del p.K721Rfs*5 0.38 TCGA-CD-A4MG-01 2 201798648 201798648 A G ORC2 Missense_Mutation p.L253S 0.11 deleterious(0) probably_damaging(0.973) TCGA-CD-A4MG-01 2 202131283 202131283 T C CASP8 Missense_Mutation p.L84P 0.17 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 2 202507331 202507331 C T TMEM237 Intron 0.10 TCGA-CD-A4MG-01 2 202590095 202590095 C T ALS2 Missense_Mutation p.G1111S 0.24 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 2 202591207 202591207 C T ALS2 Missense_Mutation p.G1083E 0.12 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MG-01 2 203378520 203378520 T C BMPR2 Missense_Mutation p.V166A 0.31 tolerated(0.59) benign(0.005) TCGA-CD-A4MG-01 2 204259439 204259439 C T ABI2 Missense_Mutation p.R193C 0.23 deleterious(0) probably_damaging(0.973) TCGA-CD-A4MG-01 2 207041592 207041592 A - GPR1 Frame_Shift_Del p.F127Sfs*2 0.21 TCGA-CD-A4MG-01 2 209271760 209271760 G A PTH2R 5'UTR 0.19 TCGA-CD-A4MG-01 2 20990056 20990056 G A C2orf43 Missense_Mutation p.A86V 0.30 tolerated(0.61) benign(0.004) TCGA-CD-A4MG-01 2 210561667 210561667 A - MAP2 Frame_Shift_Del p.T1474Qfs*14 0.41 TCGA-CD-A4MG-01 2 211018420 211018420 A G KANSL1L Missense_Mutation p.V296A 0.41 tolerated(0.34) benign(0.019) TCGA-CD-A4MG-01 2 21228843 21228843 A G APOB Missense_Mutation p.W3633R 0.31 probably_damaging(0.999) TCGA-CD-A4MG-01 2 21230108 21230108 T - APOB Frame_Shift_Del p.N3211Tfs*6 0.10 TCGA-CD-A4MG-01 2 21242772 21242772 G C APOB Missense_Mutation p.T941R 0.25 possibly_damaging(0.728) TCGA-CD-A4MG-01 2 212812286 212812286 A G ERBB4 Missense_Mutation p.L97P 0.22 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 2 212989563 212989563 G A ERBB4 Missense_Mutation p.R50C 0.45 deleterious(0.01) possibly_damaging(0.545) TCGA-CD-A4MG-01 2 219129245 219129245 G T AAMP 3'UTR 0.48 TCGA-CD-A4MG-01 2 219221845 219221845 C T C2orf62 Missense_Mutation p.S18L 0.09 deleterious(0.04) benign(0.396) TCGA-CD-A4MG-01 2 219602834 219602834 T - TTLL4 Frame_Shift_Del p.S147Lfs*71 0.16 TCGA-CD-A4MG-01 2 219674352 219674352 A T CYP27A1 Missense_Mutation p.Q103L 0.21 tolerated(0.65) benign(0.01) TCGA-CD-A4MG-01 2 219941984 219941984 G T NHEJ1 Missense_Mutation p.P270H 0.22 deleterious(0.01) benign(0.436) TCGA-CD-A4MG-01 2 220037570 220037570 G - CNPPD1 Frame_Shift_Del p.P324Qfs*89 0.33 TCGA-CD-A4MG-01 2 220097230 220097230 C T ANKZF1 Missense_Mutation p.S128L 0.20 deleterious(0) probably_damaging(0.962) TCGA-CD-A4MG-01 2 220099718 220099718 C T ANKZF1 Missense_Mutation p.L459F 0.53 tolerated(0.7) benign(0.308) TCGA-CD-A4MG-01 2 220251035 220251035 C T DNPEP Silent p.L144L 0.08 TCGA-CD-A4MG-01 2 220251118 220251118 G A DNPEP Missense_Mutation p.R117C 0.58 deleterious(0) possibly_damaging(0.773) TCGA-CD-A4MG-01 2 220313050 220313050 G A SPEG Silent p.S390S 0.17 TCGA-CD-A4MG-01 2 220368861 220368861 C T GMPPA Silent p.G182G 0.42 TCGA-CD-A4MG-01 2 220435508 220435508 G A OBSL1 Silent p.C149C 0.30 TCGA-CD-A4MG-01 2 222428510 222428510 A G EPHA4 Missense_Mutation p.V255A 0.10 deleterious(0) possibly_damaging(0.857) TCGA-CD-A4MG-01 2 227729646 227729646 G A RHBDD1 Nonsense_Mutation p.W79* 0.16 TCGA-CD-A4MG-01 2 227919310 227919310 C A COL4A4 Nonsense_Mutation p.G954* 0.62 TCGA-CD-A4MG-01 2 228154792 228154792 A G COL4A3 Missense_Mutation p.M1020V 0.53 unknown(0) TCGA-CD-A4MG-01 2 228207513 228207513 C T MFF Missense_Mutation p.P191S 0.09 tolerated(0.32) benign(0.003) TCGA-CD-A4MG-01 2 228884188 228884188 G A SPHKAP Missense_Mutation p.A461V 0.20 tolerated(0.23) benign(0.008) TCGA-CD-A4MG-01 2 230223247 230223247 A - DNER 3'UTR 0.28 TCGA-CD-A4MG-01 2 231176177 231176177 C T SP140 Missense_Mutation p.A791V 0.13 tolerated(0.93) benign(0.044) TCGA-CD-A4MG-01 2 231327216 231327216 C T SP100 Missense_Mutation p.A347V 0.20 tolerated(0.13) benign(0.11) TCGA-CD-A4MG-01 2 231988551 231988551 T - HTR2B 5'UTR 0.18 TCGA-CD-A4MG-01 2 232458288 232458288 C T C2orf57 Missense_Mutation p.A209V 0.25 tolerated(0.19) possibly_damaging(0.866) TCGA-CD-A4MG-01 2 232597730 232597730 T C PDE6D Missense_Mutation p.I129V 0.10 tolerated(0.16) benign(0.124) TCGA-CD-A4MG-01 2 233350773 233350774 - C ECEL1 Frame_Shift_Ins p.R199Afs*66 0.27 TCGA-CD-A4MG-01 2 233681683 233681683 C T GIGYF2 Nonsense_Mutation p.R792* 0.24 TCGA-CD-A4MG-01 2 233897495 233897495 G A NEU2 Silent p.A38A 0.61 TCGA-CD-A4MG-01 2 233899254 233899254 C A NEU2 Missense_Mutation p.H210Q 0.09 tolerated(0.45) benign(0.191) TCGA-CD-A4MG-01 2 233899485 233899485 C T NEU2 Silent p.G287G 0.08 TCGA-CD-A4MG-01 2 234621913 234621913 T C UGT1A5 Silent p.L92L 0.49 TCGA-CD-A4MG-01 2 234638243 234638243 C T UGT1A3 Silent p.C157C 0.58 TCGA-CD-A4MG-01 2 234750828 234750828 T C HJURP Missense_Mutation p.K200E 0.31 tolerated(1) benign(0.332) TCGA-CD-A4MG-01 2 236649672 236649672 G - AGAP1 Frame_Shift_Del p.G127Afs*24 0.12 TCGA-CD-A4MG-01 2 237075079 237075079 G A GBX2 Silent p.V175V 0.21 TCGA-CD-A4MG-01 2 239079046 239079047 - A ILKAP 3'UTR 0.41 TCGA-CD-A4MG-01 2 241569724 241569724 C T GPR35 Missense_Mutation p.R150W 0.52 deleterious(0) probably_damaging(0.924) TCGA-CD-A4MG-01 2 241726716 241726716 G A KIF1A Silent p.F127F 0.49 TCGA-CD-A4MG-01 2 242194559 242194559 G A HDLBP Silent p.T365T 0.24 TCGA-CD-A4MG-01 2 25384009 25384009 G A POMC Missense_Mutation p.P249S 0.12 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 2 26535824 26535824 C T GPR113 Missense_Mutation p.R547H 0.27 tolerated(0.31) benign(0.01) TCGA-CD-A4MG-01 2 27162904 27162905 CT - DPYSL5 Frame_Shift_Del p.L319Efs*51 0.27 TCGA-CD-A4MG-01 2 27305785 27305786 - G EMILIN1 Frame_Shift_Ins p.L452Afs*57 0.29 TCGA-CD-A4MG-01 2 27306611 27306611 G - EMILIN1 Frame_Shift_Del p.R726Dfs*84 0.16 TCGA-CD-A4MG-01 2 27306679 27306679 T C EMILIN1 Missense_Mutation p.L747P 0.15 probably_damaging(0.972) TCGA-CD-A4MG-01 2 27463982 27463982 G A CAD Missense_Mutation p.A1899T 0.14 tolerated(0.53) benign(0.035) TCGA-CD-A4MG-01 2 27560869 27560869 G A GTF3C2 Nonsense_Mutation p.R292* 0.24 TCGA-CD-A4MG-01 2 28065937 28065937 C A RBKS Nonsense_Mutation p.G171* 0.33 TCGA-CD-A4MG-01 2 28843473 28843473 A G PLB1 Silent p.G1130G 0.38 TCGA-CD-A4MG-01 2 29287719 29287719 C - C2orf71 3'UTR 0.22 TCGA-CD-A4MG-01 2 29462640 29462640 G A ALK Missense_Mutation p.S754F 0.09 deleterious(0.02) probably_damaging(0.964) TCGA-CD-A4MG-01 2 31483400 31483400 A G EHD3 Missense_Mutation p.E176G 0.08 tolerated(0.05) benign(0.014) TCGA-CD-A4MG-01 2 32249243 32249243 T A DPY30 3'UTR 0.29 TCGA-CD-A4MG-01 2 32379525 32379525 A G SPAST Missense_Mutation p.Y604C 0.27 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MG-01 2 36805950 36805950 G T FEZ2 Silent p.A231A 0.28 TCGA-CD-A4MG-01 2 37041389 37041389 C T VIT Missense_Mutation p.T656I 0.27 deleterious(0) probably_damaging(0.956) TCGA-CD-A4MG-01 2 37234399 37234399 T C HEATR5B Missense_Mutation p.Y1524C 0.24 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 2 37376193 37376193 A - EIF2AK2 Intron 0.28 TCGA-CD-A4MG-01 2 37414553 37414553 T - SULT6B1 Frame_Shift_Del p.K48Sfs*21 0.39 TCGA-CD-A4MG-01 2 38526463 38526463 C T ATL2 Missense_Mutation p.A379T 0.28 deleterious(0.01) possibly_damaging(0.871) TCGA-CD-A4MG-01 2 44428501 44428501 T - PPM1B Frame_Shift_Del p.F56Lfs*21 0.15 TCGA-CD-A4MG-01 2 45616428 45616428 C T SRBD1 3'UTR 0.31 TCGA-CD-A4MG-01 2 48028049 48028049 G A MSH6 Missense_Mutation p.R976H 0.33 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MG-01 2 48050315 48050315 A G FBXO11 Missense_Mutation p.V528A 0.40 deleterious(0) possibly_damaging(0.604) TCGA-CD-A4MG-01 2 48602442 48602442 C T FOXN2 Nonsense_Mutation p.R386* 0.34 TCGA-CD-A4MG-01 2 48808775 48808775 G A STON1-GTF2A1L Missense_Mutation p.V335I 0.19 deleterious(0.03) benign(0.047) TCGA-CD-A4MG-01 2 48808931 48808931 C A STON1-GTF2A1L Missense_Mutation p.L387I 0.24 tolerated(0.11) probably_damaging(0.996) TCGA-CD-A4MG-01 2 50318472 50318472 C T NRXN1 Missense_Mutation p.R1276H 0.07 tolerated(0.53) possibly_damaging(0.554) TCGA-CD-A4MG-01 2 55408858 55408858 C A CLHC1 Missense_Mutation p.K343N 0.18 deleterious(0.01) possibly_damaging(0.776) TCGA-CD-A4MG-01 2 55489457 55489457 T - MTIF2 Frame_Shift_Del p.N109Tfs*10 0.23 TCGA-CD-A4MG-01 2 61571087 61571087 T - USP34 Frame_Shift_Del p.N788Ifs*16 0.10 TCGA-CD-A4MG-01 2 62373948 62373948 C T AC018462.2 RNA 0.23 TCGA-CD-A4MG-01 2 64863313 64863313 T C SERTAD2 Missense_Mutation p.I231M 0.25 tolerated(0.05) possibly_damaging(0.468) TCGA-CD-A4MG-01 2 65300081 65300081 A G CEP68 Silent p.E617E 0.26 TCGA-CD-A4MG-01 2 65659116 65659116 G T SPRED2 Silent p.T2T 0.33 TCGA-CD-A4MG-01 2 67626691 67626692 - A ETAA1 Frame_Shift_Ins p.Q124Tfs*7 0.38 TCGA-CD-A4MG-01 2 68544107 68544107 G A CNRIP1 Intron 0.44 TCGA-CD-A4MG-01 2 69053364 69053364 C T ARHGAP25 3'UTR 0.30 TCGA-CD-A4MG-01 2 69179986 69179987 - T GKN2 Frame_Shift_Ins p.I3Nfs*23 0.16 TCGA-CD-A4MG-01 2 70188960 70188960 C T ASPRV1 5'UTR 0.16 TCGA-CD-A4MG-01 2 71187161 71187161 G A ATP6V1B1 Missense_Mutation p.G180S 0.34 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 2 71743310 71743310 A G DYSF Missense_Mutation p.T297A 0.09 tolerated(0.19) benign(0.007) TCGA-CD-A4MG-01 2 73519471 73519471 G A EGR4 Missense_Mutation p.S295L 0.35 deleterious(0) probably_damaging(0.998) TCGA-CD-A4MG-01 2 73800417 73800417 C T ALMS1 Nonsense_Mutation p.R3804* 0.29 TCGA-CD-A4MG-01 2 74185955 74185955 G A DGUOK 3'UTR 0.38 TCGA-CD-A4MG-01 2 74327752 74327752 C T TET3 Silent p.Y1144Y 0.45 TCGA-CD-A4MG-01 2 74593706 74593706 C A DCTN1 Missense_Mutation p.W836C 0.24 tolerated(0.08) benign(0.005) TCGA-CD-A4MG-01 2 74708370 74708370 C T CCDC142 Missense_Mutation p.R413Q 0.27 tolerated(0.62) benign(0.001) TCGA-CD-A4MG-01 2 74757242 74757242 G A HTRA2 Missense_Mutation p.A37T 0.15 deleterious_low_confidence(0) benign(0.176) TCGA-CD-A4MG-01 2 80529700 80529700 G A LRRTM1 Silent p.G415G 0.36 TCGA-CD-A4MG-01 2 80529904 80529904 G A LRRTM1 Silent p.Y347Y 0.25 TCGA-CD-A4MG-01 2 85051310 85051310 G T TRABD2A Silent p.T318T 0.09 TCGA-CD-A4MG-01 2 86352131 86352131 G A PTCD3 Missense_Mutation p.A244T 0.31 deleterious(0) probably_damaging(0.934) TCGA-CD-A4MG-01 2 86444208 86444208 C T REEP1 3'UTR 0.18 TCGA-CD-A4MG-01 2 86697506 86697506 T G KDM3A Missense_Mutation p.F567V 0.24 deleterious(0.01) probably_damaging(0.996) TCGA-CD-A4MG-01 2 86709698 86709698 A G KDM3A Missense_Mutation p.S935G 0.20 tolerated(0.06) benign(0.345) TCGA-CD-A4MG-01 2 86737479 86737479 A G CHMP3 Splice_Site p.X165_splice 0.29 TCGA-CD-A4MG-01 2 89103957 89103957 G A ANKRD36BP2 RNA 0.50 TCGA-CD-A4MG-01 2 8926140 8926140 T - KIDINS220 Frame_Shift_Del p.T654Hfs*34 0.22 TCGA-CD-A4MG-01 2 95775728 95775728 T - MRPS5 Frame_Shift_Del p.G113Efs*14 0.25 TCGA-CD-A4MG-01 2 9630330 9630330 A G ADAM17 Silent p.V817V 0.30 TCGA-CD-A4MG-01 2 96781640 96781640 C T ADRA2B Silent p.T83T 0.30 TCGA-CD-A4MG-01 2 96949574 96949574 C T SNRNP200 Missense_Mutation p.V1521I 0.26 tolerated(0.22) benign(0.031) TCGA-CD-A4MG-01 2 97427678 97427678 C - CNNM4 Frame_Shift_Del p.L316Sfs*26 0.18 TCGA-CD-A4MG-01 2 97526493 97526493 C T SEMA4C Missense_Mutation p.R791H 0.22 deleterious(0.04) probably_damaging(0.999) TCGA-CD-A4MG-01 2 98928925 98928925 G A VWA3B 3'UTR 0.32 TCGA-CD-A4MG-01 2 99204009 99204009 C T INPP4A Silent p.L958L 0.27 TCGA-CD-A4MG-01 2 99256419 99256419 G T MGAT4A Missense_Mutation p.P392T 0.26 deleterious(0) probably_damaging(0.954) TCGA-CD-A4MG-01 3 10018666 10018666 C T EMC3 Silent p.K94K 0.32 TCGA-CD-A4MG-01 3 100569540 100569540 T - ABI3BP Frame_Shift_Del p.T422Lfs*96 0.17 TCGA-CD-A4MG-01 3 101070484 101070484 T - SENP7 Frame_Shift_Del p.K545Nfs*11 0.20 TCGA-CD-A4MG-01 3 10301898 10301898 T C TATDN2 Silent p.I164I 0.10 TCGA-CD-A4MG-01 3 10311865 10311865 G A TATDN2 Nonsense_Mutation p.W333* 0.07 TCGA-CD-A4MG-01 3 10370568 10370568 G A ATP2B2 Missense_Mutation p.T1221I 0.21 tolerated_low_confidence(0.2) benign(0.008) TCGA-CD-A4MG-01 3 108074114 108074114 G A HHLA2 Missense_Mutation p.D191N 0.19 tolerated(0.38) benign(0.028) TCGA-CD-A4MG-01 3 111297890 111297890 A G CD96 Missense_Mutation p.Q203R 0.21 tolerated(0.24) benign(0.009) TCGA-CD-A4MG-01 3 112299856 112299856 T - SLC35A5 Frame_Shift_Del p.Y300Mfs*8 0.19 TCGA-CD-A4MG-01 3 112358121 112358121 T C CCDC80 Missense_Mutation p.E211G 0.25 deleterious(0.01) probably_damaging(0.913) TCGA-CD-A4MG-01 3 11301949 11301949 G A HRH1 Missense_Mutation p.R409H 0.28 deleterious(0) probably_damaging(0.996) TCGA-CD-A4MG-01 3 113115474 113115474 C T WDR52 Missense_Mutation p.R557Q 0.21 tolerated(0.22) probably_damaging(0.937) TCGA-CD-A4MG-01 3 113675184 113675184 A G ZDHHC23 Splice_Site p.X291_splice 0.32 TCGA-CD-A4MG-01 3 113679540 113679540 T - ZDHHC23 Intron 0.37 TCGA-CD-A4MG-01 3 114070045 114070045 G A ZBTB20 Missense_Mutation p.R294C 0.28 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-CD-A4MG-01 3 119306493 119306493 C A ADPRH Missense_Mutation p.A281D 0.30 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 3 12200336 12200336 G A TIMP4 Missense_Mutation p.P2L 0.36 deleterious_low_confidence(0.02) benign(0.074) TCGA-CD-A4MG-01 3 122667488 122667488 G - SEMA5B Frame_Shift_Del p.L119Wfs*125 0.18 TCGA-CD-A4MG-01 3 123049782 123049782 C T ADCY5 Missense_Mutation p.A534T 0.08 deleterious(0) probably_damaging(0.998) TCGA-CD-A4MG-01 3 123359180 123359180 C T MYLK Silent p.T1597T 0.24 TCGA-CD-A4MG-01 3 124017664 124017664 G T KALRN Missense_Mutation p.K330N 0.25 deleterious(0.01) possibly_damaging(0.572) TCGA-CD-A4MG-01 3 124352739 124352740 CA - KALRN Frame_Shift_Del p.L142Pfs*8 0.38 TCGA-CD-A4MG-01 3 124438037 124438037 G T RP11-71H17.7 5'Flank 0.23 TCGA-CD-A4MG-01 3 126070712 126070712 C T KLF15 Missense_Mutation p.A352T 0.12 tolerated(0.46) possibly_damaging(0.881) TCGA-CD-A4MG-01 3 126736666 126736666 T C PLXNA1 Silent p.C1197C 0.26 TCGA-CD-A4MG-01 3 127338055 127338055 G A MCM2 Silent p.P733P 0.11 TCGA-CD-A4MG-01 3 12858739 12858739 C A CAND2 Missense_Mutation p.P770T 0.21 tolerated(0.26) benign(0.089) TCGA-CD-A4MG-01 3 128840142 128840142 C T RAB43 Missense_Mutation p.G64D 0.47 tolerated(0.05) benign(0.217) TCGA-CD-A4MG-01 3 129214425 129214425 A G IFT122 Missense_Mutation p.D779G 0.09 deleterious(0) probably_damaging(0.961) TCGA-CD-A4MG-01 3 129221567 129221567 G A IFT122 Missense_Mutation p.A848T 0.06 tolerated(0.11) benign(0.099) TCGA-CD-A4MG-01 3 129823065 129823065 G A FAM86HP RNA 0.20 TCGA-CD-A4MG-01 3 130282310 130282310 C T COL6A6 Missense_Mutation p.R155W 0.14 deleterious(0.01) possibly_damaging(0.908) TCGA-CD-A4MG-01 3 132175174 132175174 G - DNAJC13 Frame_Shift_Del p.L345Yfs*10 0.15 TCGA-CD-A4MG-01 3 132221232 132221232 T C DNAJC13 Missense_Mutation p.Y1546H 0.10 tolerated(1) benign(0) TCGA-CD-A4MG-01 3 13368884 13368884 C T NUP210 Missense_Mutation p.R1447H 0.21 tolerated(0.06) possibly_damaging(0.523) TCGA-CD-A4MG-01 3 133692546 133692546 A G SLCO2A1 Missense_Mutation p.F120L 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-CD-A4MG-01 3 133878181 133878181 G T RYK Missense_Mutation p.L539M 0.37 deleterious(0.04) probably_damaging(1) TCGA-CD-A4MG-01 3 134085137 134085137 G A AMOTL2 Missense_Mutation p.R392W 0.09 deleterious(0.01) probably_damaging(1) TCGA-CD-A4MG-01 3 13417008 13417008 A G NUP210 Missense_Mutation p.I476T 0.30 deleterious(0) possibly_damaging(0.824) TCGA-CD-A4MG-01 3 134670334 134670334 C G EPHB1 Missense_Mutation p.A82G 0.32 tolerated(0.09) probably_damaging(0.982) TCGA-CD-A4MG-01 3 135870112 135870112 A G MSL2 Silent p.R537R 0.21 TCGA-CD-A4MG-01 3 138433529 138433529 A G PIK3CB Silent p.T361T 0.10 TCGA-CD-A4MG-01 3 138739078 138739078 G A PRR23B Silent p.C142C 0.35 TCGA-CD-A4MG-01 3 13896246 13896246 G A WNT7A Missense_Mutation p.A118V 0.22 deleterious(0.05) probably_damaging(0.911) TCGA-CD-A4MG-01 3 139081286 139081286 T C COPB2 Missense_Mutation p.E653G 0.27 deleterious(0.02) possibly_damaging(0.507) TCGA-CD-A4MG-01 3 139171880 139171880 C T RBP2 3'UTR 0.22 TCGA-CD-A4MG-01 3 140281016 140281016 A G CLSTN2 Missense_Mutation p.N693S 0.32 tolerated(0.08) benign(0.13) TCGA-CD-A4MG-01 3 140281769 140281769 C T CLSTN2 Missense_Mutation p.R777C 0.26 deleterious(0) probably_damaging(0.991) TCGA-CD-A4MG-01 3 140401956 140401956 G A TRIM42 Missense_Mutation p.E332K 0.16 tolerated(0.41) benign(0.09) TCGA-CD-A4MG-01 3 142561847 142561847 A G PCOLCE2 Silent p.S164S 0.27 TCGA-CD-A4MG-01 3 142840157 142840157 G A CHST2 Missense_Mutation p.V167M 0.31 deleterious(0) probably_damaging(0.94) TCGA-CD-A4MG-01 3 145795694 145795694 T - PLOD2 Frame_Shift_Del p.D507Tfs*60 0.22 TCGA-CD-A4MG-01 3 147128521 147128521 C A ZIC1 Missense_Mutation p.H208N 0.36 deleterious(0.03) probably_damaging(0.923) TCGA-CD-A4MG-01 3 14724603 14724603 G A C3orf20 Missense_Mutation p.R128H 0.17 tolerated(0.32) benign(0.002) TCGA-CD-A4MG-01 3 148744276 148744276 G A GYG1 Missense_Mutation p.G289D 0.08 tolerated(0.17) benign(0.255) TCGA-CD-A4MG-01 3 149613269 149613269 G A RNF13 Missense_Mutation p.A111T 0.32 deleterious(0) possibly_damaging(0.737) TCGA-CD-A4MG-01 3 149638970 149638970 G A RNF13 Missense_Mutation p.R219H 0.33 tolerated(0.18) benign(0.001) TCGA-CD-A4MG-01 3 150916134 150916134 T G GPR171 3'UTR 0.41 TCGA-CD-A4MG-01 3 151056447 151056447 G - P2RY12 Frame_Shift_Del p.K64Rfs*10 0.12 TCGA-CD-A4MG-01 3 151112591 151112591 A G MED12L Missense_Mutation p.K1884R 0.08 tolerated_low_confidence(0.44) benign(0.11) TCGA-CD-A4MG-01 3 152150657 152150657 C A MBNL1 Missense_Mutation p.P166H 0.11 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 3 152163159 152163159 C T MBNL1 Missense_Mutation p.T213I 0.14 tolerated(0.15) possibly_damaging(0.886) TCGA-CD-A4MG-01 3 15473709 15473709 G A EAF1 Missense_Mutation p.S105N 0.22 tolerated(1) benign(0.011) TCGA-CD-A4MG-01 3 154862224 154862225 - A MME Frame_Shift_Ins p.R468Efs*3 0.09 TCGA-CD-A4MG-01 3 155628964 155628964 A G GMPS Missense_Mutation p.N261S 0.16 tolerated(0.15) benign(0.003) TCGA-CD-A4MG-01 3 156422795 156422795 G A TIPARP Missense_Mutation p.D617N 0.27 tolerated(0.06) possibly_damaging(0.659) TCGA-CD-A4MG-01 3 156763369 156763369 C T LEKR1 Missense_Mutation p.R637C 0.23 tolerated(0.24) benign(0.002) TCGA-CD-A4MG-01 3 15686427 15686427 A C BTD Missense_Mutation p.D355A 0.23 tolerated(0.5) benign(0.007) TCGA-CD-A4MG-01 3 159604040 159604040 G T IQCJ-SCHIP1 Missense_Mutation p.S384I 0.31 deleterious(0) probably_damaging(0.995) TCGA-CD-A4MG-01 3 160156198 160156198 G A TRIM59 Silent p.R258R 0.09 TCGA-CD-A4MG-01 3 16217011 16217011 G A GALNT15 Missense_Mutation p.R118H 0.14 deleterious(0.02) benign(0.011) TCGA-CD-A4MG-01 3 16343348 16343348 A - OXNAD1 Frame_Shift_Del p.N218Ifs*14 0.26 TCGA-CD-A4MG-01 3 164781250 164781250 A - SI Frame_Shift_Del p.L296* 0.09 TCGA-CD-A4MG-01 3 168838978 168838978 T C MECOM Missense_Mutation p.N210S 0.24 deleterious(0.02) probably_damaging(0.992) TCGA-CD-A4MG-01 3 170819309 170819309 C A TNIK Missense_Mutation p.E840D 0.28 tolerated(0.75) benign(0.028) TCGA-CD-A4MG-01 3 17202627 17202627 C T TBC1D5 Missense_Mutation p.R761H 0.22 tolerated_low_confidence(0.34) benign(0.001) TCGA-CD-A4MG-01 3 183145784 183145784 C T MCF2L2 5'UTR 0.30 TCGA-CD-A4MG-01 3 183861930 183861930 G A EIF2B5 Missense_Mutation p.R638H 0.22 tolerated(0.07) benign(0.07) TCGA-CD-A4MG-01 3 184062581 184062581 G A FAM131A Silent p.S308S 0.34 TCGA-CD-A4MG-01 3 184935990 184935990 T C EHHADH Missense_Mutation p.I168V 0.22 tolerated(0.07) benign(0.052) TCGA-CD-A4MG-01 3 185191365 185191365 A G MAP3K13 Missense_Mutation p.E749G 0.22 tolerated_low_confidence(0.06) benign(0.046) TCGA-CD-A4MG-01 3 185212518 185212518 A - TMEM41A Frame_Shift_Del p.F156Sfs*5 0.28 TCGA-CD-A4MG-01 3 185304261 185304262 - C SENP2 Frame_Shift_Ins p.A23Cfs*21 0.14 TCGA-CD-A4MG-01 3 189584501 189584501 G A TP63 Missense_Mutation p.R266Q 0.29 deleterious(0.02) benign(0.116) TCGA-CD-A4MG-01 3 191179227 191179227 T C PYDC2 Silent p.C92C 0.23 TCGA-CD-A4MG-01 3 192997203 192997203 T A ATP13A5 Silent p.T1089T 0.27 TCGA-CD-A4MG-01 3 195306281 195306281 C T APOD Missense_Mutation p.A18T 0.10 tolerated(0.34) unknown(0) TCGA-CD-A4MG-01 3 195516927 195516927 T C MUC4 Silent p.T508T 0.15 TCGA-CD-A4MG-01 3 196214348 196214351 CTGT - RNF168 Frame_Shift_Del p.A161Kfs*11 0.18 TCGA-CD-A4MG-01 3 196386689 196386689 G A NRROS Missense_Mutation p.A59T 0.31 tolerated(0.69) benign(0.005) TCGA-CD-A4MG-01 3 196387398 196387398 C A NRROS Nonsense_Mutation p.S295* 0.23 TCGA-CD-A4MG-01 3 196786868 196786868 C T DLG1 Missense_Mutation p.G825D 0.15 deleterious(0.02) probably_damaging(0.976) TCGA-CD-A4MG-01 3 197260430 197260430 C T BDH1 Missense_Mutation p.R29H 0.08 tolerated_low_confidence(0.17) benign(0) TCGA-CD-A4MG-01 3 20193926 20193927 - C KAT2B Frame_Shift_Ins p.E806* 0.18 TCGA-CD-A4MG-01 3 24206519 24206519 T - THRB Intron 0.37 TCGA-CD-A4MG-01 3 25760909 25760909 A G NGLY1 3'UTR 0.26 TCGA-CD-A4MG-01 3 31703521 31703521 A G OSBPL10 3'UTR 0.11 TCGA-CD-A4MG-01 3 32859644 32859644 G A TRIM71 Silent p.P24P 0.27 TCGA-CD-A4MG-01 3 33055705 33055705 C - GLB1 Frame_Shift_Del p.G526Afs*74 0.24 TCGA-CD-A4MG-01 3 33135323 33135323 A G TMPPE Missense_Mutation p.L122P 0.29 deleterious(0) probably_damaging(0.997) TCGA-CD-A4MG-01 3 33174141 33174141 G A CRTAP Silent p.Q339Q 0.24 TCGA-CD-A4MG-01 3 35833988 35833988 T C ARPP21 Missense_Mutation p.V717A 0.21 deleterious(0) benign(0.128) TCGA-CD-A4MG-01 3 37034661 37034661 C T EPM2AIP1 5'UTR 0.34 TCGA-CD-A4MG-01 3 38155899 38155899 C A DLEC1 Missense_Mutation p.L1245M 0.37 tolerated(0.13) possibly_damaging(0.785) TCGA-CD-A4MG-01 3 38601889 38601889 G A SCN5A Missense_Mutation p.P1332S 0.25 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MG-01 3 38768277 38768277 C - SCN10A Frame_Shift_Del p.S970Afs*55 0.08 TCGA-CD-A4MG-01 3 38938349 38938349 A G SCN11A Missense_Mutation p.I797T 0.12 deleterious(0) possibly_damaging(0.745) TCGA-CD-A4MG-01 3 38938481 38938482 - C SCN11A Frame_Shift_Ins p.D753Gfs*63 0.19 TCGA-CD-A4MG-01 3 39107349 39107349 C T WDR48 Silent p.N79N 0.13 TCGA-CD-A4MG-01 3 39229301 39229301 C - XIRP1 Frame_Shift_Del p.D546Tfs*16 0.24 TCGA-CD-A4MG-01 3 40557460 40557460 G T ZNF620 Missense_Mutation p.Q125H 0.35 deleterious(0.05) benign(0.032) TCGA-CD-A4MG-01 3 42739654 42739654 A C HHATL Missense_Mutation p.F225V 0.34 deleterious(0) probably_damaging(0.99) TCGA-CD-A4MG-01 3 42906981 42906981 C T ACKR2 Silent p.A329A 0.24 TCGA-CD-A4MG-01 3 44492863 44492863 C - ZNF445 Frame_Shift_Del p.D181Tfs*9 0.26 TCGA-CD-A4MG-01 3 44685182 44685182 G T ZNF197 Missense_Mutation p.G854C 0.19 deleterious(0.01) benign(0.12) TCGA-CD-A4MG-01 3 45077427 45077427 G - CLEC3B 3'UTR 0.23 TCGA-CD-A4MG-01 3 45812748 45812748 C T SLC6A20 Missense_Mutation p.G299D 0.19 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 3 46539591 46539591 G T RTP3 Missense_Mutation p.Q13H 0.15 deleterious(0) probably_damaging(0.99) TCGA-CD-A4MG-01 3 46560368 46560368 T - LRRC2 3'UTR 0.43 TCGA-CD-A4MG-01 3 46727050 46727050 C T ALS2CL Missense_Mutation p.V251M 0.09 deleterious(0.02) possibly_damaging(0.695) TCGA-CD-A4MG-01 3 47041836 47041836 G A NBEAL2 Missense_Mutation p.G1416D 0.33 tolerated(0.15) benign(0.028) TCGA-CD-A4MG-01 3 47045639 47045639 G A NBEAL2 Missense_Mutation p.R1985H 0.34 deleterious(0) probably_damaging(0.995) TCGA-CD-A4MG-01 3 47459640 47459640 G A SCAP Missense_Mutation p.R811C 0.71 tolerated(0.12) possibly_damaging(0.513) TCGA-CD-A4MG-01 3 47555042 47555042 G - ELP6 Frame_Shift_Del p.D14Tfs*8 0.18 TCGA-CD-A4MG-01 3 48200932 48200932 T A CDC25A Nonsense_Mutation p.R446* 0.40 TCGA-CD-A4MG-01 3 48453996 48453996 A G PLXNB1 Missense_Mutation p.S1630P 0.31 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MG-01 3 48464927 48464927 G A PLXNB1 Missense_Mutation p.A365V 0.26 tolerated(0.59) possibly_damaging(0.559) TCGA-CD-A4MG-01 3 48594214 48594214 G - PFKFB4 5'UTR 0.14 TCGA-CD-A4MG-01 3 48681695 48681695 T C CELSR3 Missense_Mutation p.T2707A 0.11 tolerated(1) benign(0.001) TCGA-CD-A4MG-01 3 48699591 48699591 G T CELSR3 Silent p.S159S 0.35 TCGA-CD-A4MG-01 3 49017843 49017843 G A ARIH2 Missense_Mutation p.E391K 0.24 tolerated(0.62) benign(0.306) TCGA-CD-A4MG-01 3 49148785 49148785 C T USP19 Silent p.G1075G 0.30 TCGA-CD-A4MG-01 3 49160234 49160234 C A LAMB2 Missense_Mutation p.Q1492H 0.29 deleterious(0) possibly_damaging(0.841) TCGA-CD-A4MG-01 3 49168433 49168433 C T LAMB2 Missense_Mutation p.A289T 0.11 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 3 49568912 49568912 C T DAG1 Missense_Mutation p.A323V 0.21 tolerated(0.3) benign(0.235) TCGA-CD-A4MG-01 3 49569629 49569629 A G DAG1 Missense_Mutation p.Y562C 0.18 deleterious(0) probably_damaging(0.99) TCGA-CD-A4MG-01 3 49948980 49948980 C T MON1A Missense_Mutation p.A295T 0.30 tolerated(0.42) benign(0.053) TCGA-CD-A4MG-01 3 50095850 50095850 G A RBM6 Missense_Mutation p.R662H 0.25 deleterious(0.04) probably_damaging(0.992) TCGA-CD-A4MG-01 3 5023160 5023160 G A BHLHE40 Silent p.Q114Q 0.21 TCGA-CD-A4MG-01 3 52412741 52412741 G A DNAH1 Missense_Mutation p.R2441K 0.13 probably_damaging(1) TCGA-CD-A4MG-01 3 52813485 52813485 C A ITIH1 Missense_Mutation p.L150I 0.10 tolerated(0.16) benign(0.004) TCGA-CD-A4MG-01 3 52847501 52847501 C T ITIH4 Missense_Mutation p.R910H 0.33 tolerated(0.47) benign(0.013) TCGA-CD-A4MG-01 3 53156577 53156577 A G RFT1 Missense_Mutation p.V90A 0.35 deleterious(0.01) possibly_damaging(0.472) TCGA-CD-A4MG-01 3 53760915 53760915 G T CACNA1D Missense_Mutation p.G724C 0.22 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 3 53852202 53852202 G A CHDH Missense_Mutation p.R463C 0.43 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 3 54596940 54596940 T - CACNA2D3 Frame_Shift_Del p.F221Lfs*40 0.28 TCGA-CD-A4MG-01 3 58094188 58094188 C T FLNB Nonsense_Mutation p.R649* 0.28 TCGA-CD-A4MG-01 3 58098037 58098037 A G FLNB Missense_Mutation p.T913A 0.31 tolerated(0.22) benign(0.001) TCGA-CD-A4MG-01 3 58380796 58380796 C T PXK Silent p.N229N 0.22 TCGA-CD-A4MG-01 3 59999865 59999865 G A FHIT Silent p.C39C 0.16 TCGA-CD-A4MG-01 3 62258618 62258618 C T PTPRG Intron 0.28 TCGA-CD-A4MG-01 3 62860690 62860690 C T CADPS Silent p.S5S 0.46 TCGA-CD-A4MG-01 3 64085234 64085234 G A PRICKLE2 Silent p.R676R 0.15 TCGA-CD-A4MG-01 3 64644466 64644466 T C ADAMTS9 Silent p.E227E 0.18 TCGA-CD-A4MG-01 3 66293716 66293716 G A SLC25A26 Missense_Mutation p.A94T 0.08 deleterious(0) probably_damaging(0.969) TCGA-CD-A4MG-01 3 66430714 66430714 C T LRIG1 Silent p.V1085V 0.25 TCGA-CD-A4MG-01 3 66436662 66436662 T C LRIG1 Missense_Mutation p.D511G 0.24 deleterious(0) benign(0.31) TCGA-CD-A4MG-01 3 66463427 66463427 C T LRIG1 Missense_Mutation p.R220Q 0.29 deleterious(0) probably_damaging(0.992) TCGA-CD-A4MG-01 3 69231821 69231821 C T FRMD4B Missense_Mutation p.R656Q 0.10 tolerated(0.81) benign(0.002) TCGA-CD-A4MG-01 3 69435090 69435090 G A FRMD4B Silent p.S17S 0.23 TCGA-CD-A4MG-01 3 71015109 71015109 G A FOXP1 Silent p.N609N 0.27 TCGA-CD-A4MG-01 3 71745673 71745673 T G EIF4E3 Splice_Site p.X115_splice 0.17 TCGA-CD-A4MG-01 3 74351871 74351871 C A CNTN3 Missense_Mutation p.V586F 0.32 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 3 74420514 74420514 G A CNTN3 Missense_Mutation p.S164L 0.16 tolerated(0.75) possibly_damaging(0.594) TCGA-CD-A4MG-01 3 74548856 74548856 T - CNTN3 Frame_Shift_Del p.I46* 0.19 TCGA-CD-A4MG-01 3 78988044 78988044 C T ROBO1 Missense_Mutation p.R69H 0.14 tolerated(0.09) probably_damaging(0.961) TCGA-CD-A4MG-01 3 88040823 88040823 T - HTR1F Frame_Shift_Del p.F310Lfs*2 0.17 TCGA-CD-A4MG-01 3 88104748 88104748 G A CGGBP1 Missense_Mutation p.R127C 0.21 tolerated(0.14) benign(0.067) TCGA-CD-A4MG-01 3 88189730 88189731 - GTA ZNF654 In_Frame_Ins p.S427dup 0.22 TCGA-CD-A4MG-01 3 89521671 89521671 A G EPHA3 Silent p.T916T 0.20 TCGA-CD-A4MG-01 3 9057341 9057341 G A SRGAP3 Nonsense_Mutation p.R585* 0.17 TCGA-CD-A4MG-01 3 93779758 93779758 G - DHFRL1 3'UTR 0.29 TCGA-CD-A4MG-01 3 93779907 93779907 G A DHFRL1 Missense_Mutation p.S150L 0.31 deleterious(0) benign(0.088) TCGA-CD-A4MG-01 3 9747737 9747737 C T CPNE9 Nonsense_Mutation p.R123* 0.18 TCGA-CD-A4MG-01 3 97806904 97806905 - A OR5AC2 Frame_Shift_Ins p.V299Sfs*? 0.21 TCGA-CD-A4MG-01 3 99514882 99514882 C T COL8A1 Missense_Mutation p.R713W 0.32 deleterious(0.02) probably_damaging(0.989) TCGA-CD-A4MG-01 4 100268938 100268938 C A ADH1C Missense_Mutation p.E28D 0.32 benign(0.354) TCGA-CD-A4MG-01 4 10080565 10080565 C T WDR1 Missense_Mutation p.E449K 0.20 tolerated(0.2) possibly_damaging(0.823) TCGA-CD-A4MG-01 4 100867733 100867733 T C DNAJB14 5'UTR 0.27 TCGA-CD-A4MG-01 4 103964539 103964539 T C SLC9B2 Missense_Mutation p.S354G 0.30 deleterious(0.04) possibly_damaging(0.685) TCGA-CD-A4MG-01 4 104061164 104061164 T - CENPE Frame_Shift_Del p.I1996Lfs*7 0.11 TCGA-CD-A4MG-01 4 104067058 104067058 T C CENPE Silent p.L1447L 0.30 TCGA-CD-A4MG-01 4 108831653 108831653 T C SGMS2 Missense_Mutation p.C348R 0.35 tolerated(0.76) probably_damaging(0.996) TCGA-CD-A4MG-01 4 110743599 110743599 C T GAR1 Nonsense_Mutation p.R176* 0.36 TCGA-CD-A4MG-01 4 111434597 111434597 A G ENPEP Silent p.V445V 0.24 TCGA-CD-A4MG-01 4 114302737 114302737 G A ANK2 3'UTR 0.33 TCGA-CD-A4MG-01 4 118006156 118006156 A - TRAM1L1 Frame_Shift_Del p.S132Lfs*9 0.24 TCGA-CD-A4MG-01 4 119154278 119154278 G T NDST3 Missense_Mutation p.R644M 0.30 deleterious(0) possibly_damaging(0.905) TCGA-CD-A4MG-01 4 122854138 122854138 C T TRPC3 Missense_Mutation p.R92H 0.08 deleterious_low_confidence(0.02) probably_damaging(0.983) TCGA-CD-A4MG-01 4 123664512 123664512 G A BBS12 Missense_Mutation p.A489T 0.23 tolerated(0.25) benign(0.05) TCGA-CD-A4MG-01 4 125590318 125590318 T C ANKRD50 Missense_Mutation p.N1372D 0.32 tolerated_low_confidence(0.46) benign(0.023) TCGA-CD-A4MG-01 4 126238356 126238356 G A FAT4 Missense_Mutation p.V264I 0.38 benign(0.155) TCGA-CD-A4MG-01 4 126238440 126238440 G T FAT4 Nonsense_Mutation p.E292* 0.18 TCGA-CD-A4MG-01 4 126238905 126238905 C - FAT4 Frame_Shift_Del p.P448Lfs*15 0.26 TCGA-CD-A4MG-01 4 126239547 126239547 G A FAT4 Missense_Mutation p.A661T 0.22 probably_damaging(0.967) TCGA-CD-A4MG-01 4 128753955 128753955 A G HSPA4L Missense_Mutation p.T816A 0.20 tolerated(0.88) benign(0) TCGA-CD-A4MG-01 4 129012266 129012266 C T LARP1B Missense_Mutation p.R157W 0.32 deleterious(0.04) benign(0.308) TCGA-CD-A4MG-01 4 13485808 13485808 G - RAB28 5'UTR 0.50 TCGA-CD-A4MG-01 4 140640421 140640421 T - MAML3 3'UTR 0.19 TCGA-CD-A4MG-01 4 141600232 141600232 T C TBC1D9 Missense_Mutation p.N239D 0.33 tolerated(0.49) benign(0.033) TCGA-CD-A4MG-01 4 144135593 144135593 A - USP38 Frame_Shift_Del p.K823Nfs*2 0.16 TCGA-CD-A4MG-01 4 145567782 145567783 - C HHIP 5'UTR 0.31 TCGA-CD-A4MG-01 4 146059097 146059097 G A OTUD4 Nonsense_Mutation p.R879* 0.07 TCGA-CD-A4MG-01 4 15005744 15005744 G T CPEB2 Missense_Mutation p.G483C 0.40 tolerated_low_confidence(0.1) probably_damaging(0.992) TCGA-CD-A4MG-01 4 152203364 152203364 C T PRSS48 Missense_Mutation p.R94C 0.06 deleterious(0.03) benign(0.339) TCGA-CD-A4MG-01 4 153896923 153896924 - C FHDC1 Frame_Shift_Ins p.G830Wfs*11 0.19 TCGA-CD-A4MG-01 4 155226011 155226011 T C DCHS2 Silent p.G1350G 0.53 TCGA-CD-A4MG-01 4 155254535 155254535 G A DCHS2 Missense_Mutation p.T443M 0.09 deleterious(0.04) benign(0.393) TCGA-CD-A4MG-01 4 155507817 155507817 G A FGA Missense_Mutation p.P255L 0.30 deleterious(0.02) benign(0) TCGA-CD-A4MG-01 4 157688934 157688934 T - PDGFC Frame_Shift_Del p.K304Nfs*8 0.29 TCGA-CD-A4MG-01 4 159593521 159593521 C T ETFDH 5'UTR 0.25 TCGA-CD-A4MG-01 4 160279318 160279318 G A RAPGEF2 3'UTR 0.21 TCGA-CD-A4MG-01 4 16165091 16165093 ATG - TAPT1 In_Frame_Del p.I515del 0.15 TCGA-CD-A4MG-01 4 164246901 164246902 - TA NPY1R Frame_Shift_Ins p.R237Yfs*3 0.31 TCGA-CD-A4MG-01 4 174253066 174253066 T - HMGB2 3'UTR 0.24 TCGA-CD-A4MG-01 4 183664473 183664473 C T TENM3 Missense_Mutation p.A1177V 0.08 deleterious(0) benign(0.003) TCGA-CD-A4MG-01 4 184241061 184241061 C T CLDN22 Missense_Mutation p.C104Y 0.35 deleterious(0.01) possibly_damaging(0.519) TCGA-CD-A4MG-01 4 184931902 184931902 C T STOX2 Silent p.S637S 0.33 TCGA-CD-A4MG-01 4 185309954 185309954 C T IRF2 Silent p.K336K 0.08 TCGA-CD-A4MG-01 4 185606793 185606793 G A PRIMPOL Missense_Mutation p.R417Q 0.16 probably_damaging(1) TCGA-CD-A4MG-01 4 185652122 185652122 G A CENPU Silent p.G16G 0.23 TCGA-CD-A4MG-01 4 187118245 187118245 T - CYP4V2 Frame_Shift_Del p.Y191Tfs*7 0.08 TCGA-CD-A4MG-01 4 187541000 187541000 T C FAT1 Missense_Mutation p.H2247R 0.28 probably_damaging(0.997) TCGA-CD-A4MG-01 4 187628340 187628340 C T FAT1 Missense_Mutation p.R881H 0.28 benign(0.005) TCGA-CD-A4MG-01 4 189026334 189026334 C A TRIML2 Missense_Mutation p.R13S 0.10 deleterious(0) possibly_damaging(0.559) TCGA-CD-A4MG-01 4 1957837 1957837 C T WHSC1 Nonsense_Mutation p.R935* 0.23 TCGA-CD-A4MG-01 4 1977117 1977117 A G WHSC1 Missense_Mutation p.D1204G 0.09 tolerated(0.93) benign(0.053) TCGA-CD-A4MG-01 4 206442 206442 C T ZNF876P RNA 0.26 TCGA-CD-A4MG-01 4 20734314 20734314 G A KCNIP4 Missense_Mutation p.T211I 0.24 tolerated(0.25) benign(0.011) TCGA-CD-A4MG-01 4 20884302 20884302 C T KCNIP4 Missense_Mutation p.R31H 0.44 deleterious(0.03) benign(0.074) TCGA-CD-A4MG-01 4 22390718 22390718 C T GPR125 Missense_Mutation p.A906T 0.07 tolerated(0.24) benign(0.141) TCGA-CD-A4MG-01 4 23891638 23891638 G A PPARGC1A 5'UTR 0.24 TCGA-CD-A4MG-01 4 24521907 24521907 C T MIR573 RNA 0.31 TCGA-CD-A4MG-01 4 24801296 24801296 G A SOD3 Silent p.Q51Q 0.14 TCGA-CD-A4MG-01 4 25005411 25005411 G T LGI2 Missense_Mutation p.L434I 0.27 tolerated(0.54) benign(0.057) TCGA-CD-A4MG-01 4 25005661 25005661 C A LGI2 Silent p.L350L 0.31 TCGA-CD-A4MG-01 4 25671386 25671387 - T SLC34A2 Frame_Shift_Ins p.H253Pfs*17 0.18 TCGA-CD-A4MG-01 4 26750039 26750039 C T TBC1D19 Silent p.R442R 0.09 TCGA-CD-A4MG-01 4 30724189 30724189 G A PCDH7 Missense_Mutation p.R382H 0.24 deleterious(0) benign(0.134) TCGA-CD-A4MG-01 4 3133117 3133117 A - HTT Frame_Shift_Del p.N699Mfs*9 0.15 TCGA-CD-A4MG-01 4 3214391 3214391 T C HTT Silent p.P2243P 0.10 TCGA-CD-A4MG-01 4 3319606 3319606 G A RGS12 Missense_Mutation p.G570D 0.26 deleterious(0.01) possibly_damaging(0.801) TCGA-CD-A4MG-01 4 38691388 38691388 A - KLF3 Frame_Shift_Del p.I197Lfs*3 0.22 TCGA-CD-A4MG-01 4 39297317 39297317 G T RFC1 Silent p.T958T 0.35 TCGA-CD-A4MG-01 4 39435905 39435905 G T KLB Nonsense_Mutation p.G301* 0.33 TCGA-CD-A4MG-01 4 39780060 39780060 A G UBE2K 3'UTR 0.12 TCGA-CD-A4MG-01 4 40244931 40244931 C T RHOH 5'UTR 0.31 TCGA-CD-A4MG-01 4 40892459 40892459 T C APBB2 Missense_Mutation p.D484G 0.22 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 4 42072624 42072624 A T SLC30A9 Missense_Mutation p.N445I 0.21 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 4 42122137 42122137 C T BEND4 Missense_Mutation p.V441M 0.40 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-CD-A4MG-01 4 42122160 42122160 C T BEND4 Missense_Mutation p.G433D 0.33 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CD-A4MG-01 4 44450512 44450512 C T KCTD8 Missense_Mutation p.G10D 0.50 deleterious_low_confidence(0.01) benign(0.02) TCGA-CD-A4MG-01 4 44680574 44680574 A - GUF1 5'UTR 0.40 TCGA-CD-A4MG-01 4 46043217 46043217 C T GABRG1 Missense_Mutation p.V396M 0.23 tolerated(0.21) benign(0.001) TCGA-CD-A4MG-01 4 47458691 47458691 C T COMMD8 Missense_Mutation p.C93Y 0.19 deleterious(0) probably_damaging(0.99) TCGA-CD-A4MG-01 4 47548959 47548959 A G ATP10D Intron 0.42 TCGA-CD-A4MG-01 4 47563007 47563007 T - ATP10D Frame_Shift_Del p.L863* 0.21 TCGA-CD-A4MG-01 4 47939658 47939658 A T CNGA1 Missense_Mutation p.F354I 0.36 tolerated(0.08) probably_damaging(0.987) TCGA-CD-A4MG-01 4 54967834 54967834 A G GSX2 Silent p.E220E 0.29 TCGA-CD-A4MG-01 4 5630345 5630345 C T EVC2 Silent p.V609V 0.28 TCGA-CD-A4MG-01 4 5642272 5642272 G A EVC2 Missense_Mutation p.A480V 0.35 tolerated(0.06) benign(0.284) TCGA-CD-A4MG-01 4 5735152 5735152 A - EVC Frame_Shift_Del p.K232Sfs*3 0.09 TCGA-CD-A4MG-01 4 6083412 6083412 T G JAKMIP1 Missense_Mutation p.K342T 0.21 deleterious(0) probably_damaging(0.983) TCGA-CD-A4MG-01 4 6325022 6325022 C T PPP2R2C 3'UTR 0.33 TCGA-CD-A4MG-01 4 66467570 66467570 G A EPHA5 Silent p.C233C 0.29 TCGA-CD-A4MG-01 4 68384936 68384936 T - CENPC Frame_Shift_Del p.R206Gfs*2 0.29 TCGA-CD-A4MG-01 4 6862629 6862629 T C KIAA0232 Missense_Mutation p.Y174H 0.26 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MG-01 4 69343337 69343337 A - TMPRSS11E Frame_Shift_Del p.N321Mfs*14 0.21 TCGA-CD-A4MG-01 4 70146646 70146646 C G UGT2B28 Nonsense_Mutation p.S143* 0.36 TCGA-CD-A4MG-01 4 72897894 72897894 C T NPFFR2 Silent p.A92A 0.07 TCGA-CD-A4MG-01 4 73003815 73003815 C T NPFFR2 Silent p.V231V 0.27 TCGA-CD-A4MG-01 4 737367 737367 G A PCGF3 Missense_Mutation p.R123Q 0.24 tolerated(0.44) benign(0.014) TCGA-CD-A4MG-01 4 74354469 74354469 G A AFM Missense_Mutation p.R279H 0.08 tolerated(0.46) benign(0.049) TCGA-CD-A4MG-01 4 75312384 75312384 T C AREG Silent p.P65P 0.11 TCGA-CD-A4MG-01 4 7728581 7728581 C T SORCS2 Silent p.A940A 0.08 TCGA-CD-A4MG-01 4 78783884 78783884 G A MRPL1 5'UTR 0.48 TCGA-CD-A4MG-01 4 79841628 79841629 - G PAQR3 3'UTR 0.36 TCGA-CD-A4MG-01 4 86916162 86916162 C - ARHGAP24 Frame_Shift_Del p.N454Mfs*12 0.16 TCGA-CD-A4MG-01 4 871470 871470 G A GAK Missense_Mutation p.P597S 0.08 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 4 87690963 87690963 C T PTPN13 Silent p.L1516L 0.48 TCGA-CD-A4MG-01 4 88026993 88026993 C G AFF1 Missense_Mutation p.P458A 0.49 tolerated(0.08) unknown(0) TCGA-CD-A4MG-01 4 88047456 88047456 G T AFF1 Missense_Mutation p.G927W 0.37 deleterious(0) unknown(0) TCGA-CD-A4MG-01 4 88375609 88375609 T C NUDT9 Splice_Site p.X292_splice 0.41 TCGA-CD-A4MG-01 4 944297 944298 CA - TMEM175 Frame_Shift_Del p.T96Kfs*39 0.24 TCGA-CD-A4MG-01 4 9785033 9785033 G - DRD5 Frame_Shift_Del p.E462Rfs*4 0.21 TCGA-CD-A4MG-01 4 995271 995271 C T IDUA Missense_Mutation p.A170V 0.28 tolerated(0.25) benign(0.426) TCGA-CD-A4MG-01 4 996842 996842 G A IDUA Missense_Mutation p.R474H 0.50 tolerated(0.16) possibly_damaging(0.53) TCGA-CD-A4MG-01 5 10261696 10261696 C T CCT5 Missense_Mutation p.R340W 0.24 deleterious(0) probably_damaging(0.991) TCGA-CD-A4MG-01 5 10461379 10461379 G A ROPN1L Silent p.T167T 0.08 TCGA-CD-A4MG-01 5 1085569 1085569 G A SLC12A7 Missense_Mutation p.A232V 0.24 tolerated(0.15) benign(0.05) TCGA-CD-A4MG-01 5 112176452 112176452 G T APC Missense_Mutation p.G1721C 0.24 probably_damaging(0.971) TCGA-CD-A4MG-01 5 112197022 112197022 T C SRP19 5'UTR 0.24 TCGA-CD-A4MG-01 5 112770511 112770511 C T TSSK1B Missense_Mutation p.R9Q 0.29 deleterious(0.04) benign(0.01) TCGA-CD-A4MG-01 5 11384837 11384837 T C CTNND2 Missense_Mutation p.S373G 0.33 tolerated(1) benign(0) TCGA-CD-A4MG-01 5 115152117 115152117 C T CDO1 5'UTR 0.13 TCGA-CD-A4MG-01 5 115298780 115298780 G A AQPEP Missense_Mutation p.A156T 0.37 tolerated(0.35) benign(0.075) TCGA-CD-A4MG-01 5 118433791 118433791 C T DMXL1 Nonsense_Mutation p.Q69* 0.12 TCGA-CD-A4MG-01 5 119800237 119800237 C T PRR16 5'UTR 0.26 TCGA-CD-A4MG-01 5 121413257 121413257 C T LOX Missense_Mutation p.A142T 0.12 tolerated(0.44) benign(0.001) TCGA-CD-A4MG-01 5 131630210 131630210 A G SLC22A4 5'UTR 0.30 TCGA-CD-A4MG-01 5 131679466 131679466 A - SLC22A4 Frame_Shift_Del p.T534Qfs*14 0.21 TCGA-CD-A4MG-01 5 132537666 132537668 ATC - FSTL4 In_Frame_Del p.D595del 0.39 TCGA-CD-A4MG-01 5 133914473 133914473 C T JADE2 Silent p.D613D 0.18 TCGA-CD-A4MG-01 5 136448205 136448205 C T SPOCK1 Silent p.S131S 0.23 TCGA-CD-A4MG-01 5 136834106 136834106 C T SPOCK1 Missense_Mutation p.V48I 0.31 tolerated(1) benign(0.345) TCGA-CD-A4MG-01 5 137593558 137593558 C T GFRA3 Silent p.A185A 0.11 TCGA-CD-A4MG-01 5 137680703 137680703 C T FAM53C Missense_Mutation p.P109L 0.19 tolerated(0.36) benign(0.001) TCGA-CD-A4MG-01 5 13817685 13817685 A G DNAH5 Silent p.L2320L 0.15 TCGA-CD-A4MG-01 5 139228159 139228159 C T NRG2 Silent p.P632P 0.17 TCGA-CD-A4MG-01 5 139909369 139909369 A G ANKHD1 Missense_Mutation p.T2280A 0.23 benign(0.393) TCGA-CD-A4MG-01 5 140222372 140222372 T G PCDHA8 Missense_Mutation p.L489R 0.46 tolerated_low_confidence(0.2) benign(0.127) TCGA-CD-A4MG-01 5 140230511 140230511 T G PCDHA9 Intron 0.25 TCGA-CD-A4MG-01 5 140306365 140306365 G A PCDHAC1 5'Flank 0.19 TCGA-CD-A4MG-01 5 140502964 140559007 5:140502964-140559007 - PCDHB6 large deletion 0.09 TCGA-CD-A4MG-01 5 140516534 140516534 C T PCDHB5 Silent p.N506N 0.43 TCGA-CD-A4MG-01 5 140553206 140553206 G A PCDHB7 Missense_Mutation p.V264M 0.11 deleterious_low_confidence(0) possibly_damaging(0.833) TCGA-CD-A4MG-01 5 140564126 140564126 C T PCDHB16 Silent p.D664D 0.31 TCGA-CD-A4MG-01 5 140572634 140572634 A G PCDHB10 Missense_Mutation p.Y170C 0.19 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-CD-A4MG-01 5 140595829 140595829 C T PCDHB13 Missense_Mutation p.R712W 0.18 deleterious_low_confidence(0.01) benign(0.05) TCGA-CD-A4MG-01 5 140603872 140603872 A G PCDHB14 Silent p.S265S 0.08 TCGA-CD-A4MG-01 5 140720428 140720428 A G PCDHGA2 Silent p.R630R 0.17 TCGA-CD-A4MG-01 5 140723736 140723736 G T PCDHGA3 Missense_Mutation p.G46C 0.06 deleterious_low_confidence(0) probably_damaging(1) TCGA-CD-A4MG-01 5 140724818 140724818 G A PCDHGA3 Silent p.T406T 0.47 TCGA-CD-A4MG-01 5 140735596 140735596 G A PCDHGA4 Missense_Mutation p.V277M 0.19 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-CD-A4MG-01 5 140736283 140736283 T G PCDHGA4 Missense_Mutation p.S506A 0.20 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-CD-A4MG-01 5 140800981 140800981 C T PCDHGA11 Missense_Mutation p.R63C 0.09 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-CD-A4MG-01 5 140802087 140802087 G A PCDHGA11 Silent p.P431P 0.18 TCGA-CD-A4MG-01 5 140812146 140812146 G A PCDHGA12 Missense_Mutation p.R607H 0.24 tolerated_low_confidence(0.13) benign(0.103) TCGA-CD-A4MG-01 5 141243886 141243886 G A PCDH1 Silent p.S670S 0.25 TCGA-CD-A4MG-01 5 141318231 141318231 G A KIAA0141 Silent p.G485G 0.47 TCGA-CD-A4MG-01 5 14481681 14481681 G T TRIO Missense_Mutation p.R2140M 0.17 benign(0.086) TCGA-CD-A4MG-01 5 14488155 14488156 - C TRIO Frame_Shift_Ins p.S2476Qfs*49 0.35 TCGA-CD-A4MG-01 5 145719769 145719769 G A POU4F3 Missense_Mutation p.R260Q 0.15 deleterious(0.03) possibly_damaging(0.483) TCGA-CD-A4MG-01 5 146619136 146619136 G A STK32A 5'UTR 0.20 TCGA-CD-A4MG-01 5 146750300 146750300 C A STK32A Silent p.A248A 0.07 TCGA-CD-A4MG-01 5 147024496 147024496 C T JAKMIP2 Missense_Mutation p.A334T 0.10 tolerated(0.36) benign(0) TCGA-CD-A4MG-01 5 147473959 147473960 - T SPINK5 Frame_Shift_Ins p.C239Lfs*6 0.15 TCGA-CD-A4MG-01 5 147481386 147481387 - T SPINK5 Frame_Shift_Ins p.C451Lfs*6 0.09 TCGA-CD-A4MG-01 5 147793715 147793715 G A FBXO38 Silent p.A370A 0.39 TCGA-CD-A4MG-01 5 148207281 148207281 A G ADRB2 Missense_Mutation p.H296R 0.48 tolerated(0.42) benign(0.358) TCGA-CD-A4MG-01 5 148596538 148596538 A G ABLIM3 Missense_Mutation p.Y229C 0.11 deleterious(0) probably_damaging(0.994) TCGA-CD-A4MG-01 5 148756492 148756492 G T IL17B Missense_Mutation p.P40T 0.53 tolerated(0.44) benign(0.069) TCGA-CD-A4MG-01 5 149433654 149433654 G A CSF1R Missense_Mutation p.P966L 0.10 deleterious(0.01) possibly_damaging(0.735) TCGA-CD-A4MG-01 5 149459829 149459829 G T CSF1R Silent p.P126P 0.22 TCGA-CD-A4MG-01 5 149576667 149576667 G A SLC6A7 Missense_Mutation p.A138T 0.15 tolerated(0.14) probably_damaging(0.993) TCGA-CD-A4MG-01 5 149589080 149589080 A T SLC6A7 Missense_Mutation p.M605L 0.15 tolerated(0.3) benign(0.354) TCGA-CD-A4MG-01 5 149786866 149786866 C T CD74 Silent p.L49L 0.61 TCGA-CD-A4MG-01 5 150110226 150110226 T C DCTN4 Silent p.K274K 0.05 TCGA-CD-A4MG-01 5 150887100 150887100 C A FAT2 Missense_Mutation p.W4044C 0.10 possibly_damaging(0.706) TCGA-CD-A4MG-01 5 150924502 150924502 A G FAT2 Silent p.D2062D 0.41 TCGA-CD-A4MG-01 5 151784353 151784353 G A NMUR2 Missense_Mutation p.R108C 0.05 tolerated(0.15) benign(0.011) TCGA-CD-A4MG-01 5 153414380 153414380 G T FAM114A2 Missense_Mutation p.P45H 0.08 deleterious(0.02) benign(0.114) TCGA-CD-A4MG-01 5 153857590 153857590 C T HAND1 5'UTR 0.08 TCGA-CD-A4MG-01 5 154065380 154065383 TTTA - MIR1303 RNA 0.41 TCGA-CD-A4MG-01 5 156770019 156770019 G A FNDC9 Nonsense_Mutation p.Q176* 0.42 TCGA-CD-A4MG-01 5 156917389 156917389 G T ADAM19 Nonsense_Mutation p.C723* 0.07 TCGA-CD-A4MG-01 5 158603680 158603680 G T RNF145 Missense_Mutation p.P224H 0.09 deleterious(0) probably_damaging(0.996) TCGA-CD-A4MG-01 5 158750309 158750309 C T IL12B Silent p.P39P 0.30 TCGA-CD-A4MG-01 5 15936669 15936669 G A FBXL7 Missense_Mutation p.V284M 0.10 tolerated(0.07) benign(0.143) TCGA-CD-A4MG-01 5 160047495 160047495 T C ATP10B Missense_Mutation p.S759G 0.17 deleterious(0) benign(0.045) TCGA-CD-A4MG-01 5 167182154 167182154 G T TENM2 Intron 0.34 TCGA-CD-A4MG-01 5 167937689 167937689 A G RARS Missense_Mutation p.K484E 0.50 tolerated(0.17) benign(0.062) TCGA-CD-A4MG-01 5 168149277 168149277 G A SLIT3 Missense_Mutation p.R823W 0.12 deleterious(0.01) benign(0.015) TCGA-CD-A4MG-01 5 169508852 169508852 C T DOCK2 Missense_Mutation p.A1765V 0.25 tolerated_low_confidence(0.11) benign(0.013) TCGA-CD-A4MG-01 5 169533489 169533489 G A FOXI1 Silent p.S176S 0.46 TCGA-CD-A4MG-01 5 170232766 170232766 C T GABRP Silent p.N196N 0.49 TCGA-CD-A4MG-01 5 170725884 170725884 C T RANBP17 3'UTR 0.57 TCGA-CD-A4MG-01 5 171483 171483 C T PLEKHG4B Missense_Mutation p.A969V 0.20 deleterious(0) probably_damaging(0.992) TCGA-CD-A4MG-01 5 171639009 171639009 A G UBTD2 Missense_Mutation p.M177T 0.51 tolerated(0.08) benign(0.353) TCGA-CD-A4MG-01 5 172507732 172507733 - A CREBRF 5'UTR 0.15 TCGA-CD-A4MG-01 5 173316671 173316671 A - CPEB4 5'UTR 0.32 TCGA-CD-A4MG-01 5 173317326 173317326 C T CPEB4 Missense_Mutation p.A197V 0.10 tolerated_low_confidence(0.62) benign(0.001) TCGA-CD-A4MG-01 5 175919205 175919205 C T FAF2 Missense_Mutation p.R119C 0.07 deleterious(0.02) probably_damaging(0.926) TCGA-CD-A4MG-01 5 176084007 176084007 G - TSPAN17 Intron 0.17 TCGA-CD-A4MG-01 5 176520159 176520159 G A FGFR4 Missense_Mutation p.A360T 0.18 tolerated(0.31) benign(0.004) TCGA-CD-A4MG-01 5 176639130 176639130 A G NSD1 Missense_Mutation p.I1244V 0.22 tolerated_low_confidence(1) benign(0) TCGA-CD-A4MG-01 5 176722004 176722004 G T NSD1 Missense_Mutation p.K2545N 0.17 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-CD-A4MG-01 5 176825225 176825225 C - SLC34A1 Frame_Shift_Del p.P621Lfs*61 0.18 TCGA-CD-A4MG-01 5 176860644 176860644 G T GRK6 Missense_Mutation p.K235N 0.17 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 5 176899273 176899273 C T DBN1 5'UTR 0.57 TCGA-CD-A4MG-01 5 177575020 177575020 G A RMND5B Missense_Mutation p.R390H 0.17 tolerated(0.35) benign(0.023) TCGA-CD-A4MG-01 5 178039467 178039467 T C CLK4 Missense_Mutation p.H334R 0.08 deleterious(0.02) probably_damaging(0.97) TCGA-CD-A4MG-01 5 178579173 178579173 G - ADAMTS2 Frame_Shift_Del p.L534Wfs*20 0.15 TCGA-CD-A4MG-01 5 179260040 179260040 G A SQSTM1 Missense_Mutation p.V255I 0.22 deleterious(0.01) possibly_damaging(0.786) TCGA-CD-A4MG-01 5 179264410 179264410 T C C5orf45 Missense_Mutation p.D338G 0.06 deleterious(0.01) probably_damaging(1) TCGA-CD-A4MG-01 5 1798783 1798783 G A MRPL36 Silent p.Y89Y 0.34 TCGA-CD-A4MG-01 5 1798827 1798827 G A MRPL36 Missense_Mutation p.R75C 0.09 deleterious(0) benign(0.051) TCGA-CD-A4MG-01 5 180166307 180166308 - A OR2Y1 Frame_Shift_Ins p.Y251Lfs*17 0.30 TCGA-CD-A4MG-01 5 180622224 180622224 C T TRIM7 Missense_Mutation p.R493H 0.10 deleterious(0) probably_damaging(0.992) TCGA-CD-A4MG-01 5 1878887 1878889 CTC - IRX4 In_Frame_Del p.E252del 0.12 TCGA-CD-A4MG-01 5 19473529 19473529 G T CDH18 Missense_Mutation p.P727T 0.31 tolerated(0.21) benign(0.008) TCGA-CD-A4MG-01 5 23527496 23527496 C T PRDM9 Nonsense_Mutation p.Q767* 0.09 TCGA-CD-A4MG-01 5 24491905 24491906 - T CDH10 Frame_Shift_Ins p.N552Kfs*5 0.26 TCGA-CD-A4MG-01 5 31526792 31526792 G - DROSHA Frame_Shift_Del p.P83Hfs*25 0.25 TCGA-CD-A4MG-01 5 32098574 32098574 C T PDZD2 Silent p.H2684H 0.16 TCGA-CD-A4MG-01 5 32229761 32229761 G T MTMR12 3'UTR 0.27 TCGA-CD-A4MG-01 5 32379276 32379276 C T ZFR Missense_Mutation p.R927H 0.24 deleterious(0) unknown(0) TCGA-CD-A4MG-01 5 33937524 33937524 C T RXFP3 Silent p.L227L 0.28 TCGA-CD-A4MG-01 5 33937912 33937912 C T RXFP3 Missense_Mutation p.A356V 0.25 tolerated(0.97) benign(0.004) TCGA-CD-A4MG-01 5 33938214 33938214 G - RXFP3 Frame_Shift_Del p.R459Afs*31 0.19 TCGA-CD-A4MG-01 5 34998889 34998890 - T AGXT2 Frame_Shift_Ins p.V494Sfs*2 0.08 TCGA-CD-A4MG-01 5 35876542 35876544 AAG - IL7R In_Frame_Del p.E447del 0.21 TCGA-CD-A4MG-01 5 36142606 36142606 T C LMBRD2 Silent p.P90P 0.24 TCGA-CD-A4MG-01 5 37108532 37108533 - T C5orf42 Frame_Shift_Ins p.H3094Tfs*18 0.25 TCGA-CD-A4MG-01 5 37169374 37169374 A - C5orf42 Frame_Shift_Del p.F2251Sfs*34 0.21 TCGA-CD-A4MG-01 5 38258936 38258936 C T EGFLAM Missense_Mutation p.A27V 0.25 tolerated_low_confidence(0.14) benign(0.004) TCGA-CD-A4MG-01 5 38258945 38258945 G A EGFLAM Missense_Mutation p.R30Q 0.17 tolerated_low_confidence(0.06) benign(0.166) TCGA-CD-A4MG-01 5 38945715 38945715 A - RICTOR Frame_Shift_Del p.L1504* 0.21 TCGA-CD-A4MG-01 5 39202427 39202427 G A FYB Silent p.D222D 0.26 TCGA-CD-A4MG-01 5 42719619 42719619 T G GHR 3'UTR 0.40 TCGA-CD-A4MG-01 5 476160 476160 C T SLC9A3 Silent p.A705A 0.30 TCGA-CD-A4MG-01 5 53751767 53751767 G A HSPB3 Missense_Mutation p.A50T 0.15 tolerated(0.48) benign(0.021) TCGA-CD-A4MG-01 5 54585098 54585098 C A DHX29 Missense_Mutation p.D356Y 0.21 deleterious(0.03) benign(0.109) TCGA-CD-A4MG-01 5 55247869 55247869 T - IL6ST Frame_Shift_Del p.V530* 0.23 TCGA-CD-A4MG-01 5 55395882 55395882 T C ANKRD55 3'UTR 0.27 TCGA-CD-A4MG-01 5 58147205 58147205 G - RAB3C 3'UTR 0.15 TCGA-CD-A4MG-01 5 60050385 60050385 G T ELOVL7 3'UTR 0.47 TCGA-CD-A4MG-01 5 60186878 60186878 T - ERCC8 Frame_Shift_Del p.G294Dfs*2 0.24 TCGA-CD-A4MG-01 5 60982782 60982782 G A C5orf64 Missense_Mutation p.R37H 0.11 tolerated_low_confidence(0.57) benign(0) TCGA-CD-A4MG-01 5 63256965 63256965 G T HTR1A Silent p.G194G 0.24 TCGA-CD-A4MG-01 5 63509748 63509748 C T RNF180 Silent p.L199L 0.34 TCGA-CD-A4MG-01 5 64976614 64976614 G T SGTB Missense_Mutation p.L163I 0.19 deleterious(0.01) probably_damaging(0.992) TCGA-CD-A4MG-01 5 65458074 65458074 G A SREK1 Silent p.T183T 0.34 TCGA-CD-A4MG-01 5 6600055 6600055 A G NSUN2 Missense_Mutation p.V763A 0.14 tolerated_low_confidence(1) benign(0) TCGA-CD-A4MG-01 5 66448644 66448644 C T MAST4 Missense_Mutation p.R1159W 0.24 probably_damaging(1) TCGA-CD-A4MG-01 5 66459063 66459063 C T MAST4 Silent p.H1352H 0.30 TCGA-CD-A4MG-01 5 66462750 66462750 C T MAST4 Silent p.D2581D 0.41 TCGA-CD-A4MG-01 5 6754921 6754921 G A PAPD7 Missense_Mutation p.G498S 0.17 tolerated_low_confidence(0.45) benign(0.001) TCGA-CD-A4MG-01 5 70806644 70806644 C T BDP1 Missense_Mutation p.A1242V 0.33 tolerated(1) benign(0.002) TCGA-CD-A4MG-01 5 71757207 71757207 G T ZNF366 Silent p.P39P 0.25 TCGA-CD-A4MG-01 5 72178958 72178958 C T TNPO1 Missense_Mutation p.S350L 0.08 deleterious(0.03) possibly_damaging(0.638) TCGA-CD-A4MG-01 5 73932218 73932218 G A ENC1 Silent p.S31S 0.38 TCGA-CD-A4MG-01 5 74066523 74066523 G A NSA2 Missense_Mutation p.R137Q 0.27 tolerated(0.14) benign(0.003) TCGA-CD-A4MG-01 5 74889775 74889775 G A POLK Missense_Mutation p.V477I 0.33 tolerated(0.14) benign(0.145) TCGA-CD-A4MG-01 5 75989261 75989261 G A IQGAP2 Silent p.A1329A 0.31 TCGA-CD-A4MG-01 5 76717790 76717790 A G PDE8B Missense_Mutation p.I799V 0.17 deleterious(0) possibly_damaging(0.668) TCGA-CD-A4MG-01 5 77424993 77424993 T - AP3B1 Frame_Shift_Del p.I597Yfs*3 0.24 TCGA-CD-A4MG-01 5 7851036 7851036 C T C5orf49 Silent p.P33P 0.45 TCGA-CD-A4MG-01 5 7867447 7867447 T C FASTKD3 Silent p.T250T 0.15 TCGA-CD-A4MG-01 5 7873565 7873565 G A MTRR Missense_Mutation p.R97H 0.31 tolerated(0.59) benign(0.094) TCGA-CD-A4MG-01 5 7883316 7883316 C T MTRR Missense_Mutation p.P304S 0.33 tolerated(0.07) probably_damaging(1) TCGA-CD-A4MG-01 5 79355648 79355648 G A THBS4 Missense_Mutation p.D303N 0.12 tolerated(0.06) benign(0.001) TCGA-CD-A4MG-01 5 79733418 79733418 G A ZFYVE16 Missense_Mutation p.S305N 0.14 tolerated(0.24) benign(0.006) TCGA-CD-A4MG-01 5 94820498 94820498 G T TTC37 Missense_Mutation p.S1328Y 0.19 deleterious(0.02) possibly_damaging(0.756) TCGA-CD-A4MG-01 5 95158219 95158219 C T GLRX Missense_Mutation p.A50T 0.22 tolerated(0.13) possibly_damaging(0.489) TCGA-CD-A4MG-01 5 96112093 96112093 G T ERAP1 Intron 0.30 TCGA-CD-A4MG-01 5 96498868 96498868 C T RIOK2 Missense_Mutation p.R519H 0.12 deleterious(0.03) benign(0.032) TCGA-CD-A4MG-01 6 100896023 100896023 C T SIM1 Silent p.L283L 0.31 TCGA-CD-A4MG-01 6 100957932 100957932 C T ASCC3 Missense_Mutation p.E2113K 0.26 deleterious(0) probably_damaging(0.998) TCGA-CD-A4MG-01 6 10792006 10792006 G T MAK Missense_Mutation p.S406R 0.33 tolerated(0.05) benign(0.252) TCGA-CD-A4MG-01 6 109772894 109772894 A C MICAL1 Missense_Mutation p.L281R 0.08 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MG-01 6 109786909 109786909 C T ZBTB24 3'UTR 0.27 TCGA-CD-A4MG-01 6 110083385 110083385 T C FIG4 Missense_Mutation p.C455R 0.17 deleterious(0.04) possibly_damaging(0.564) TCGA-CD-A4MG-01 6 110540593 110540593 C T CDC40 Nonsense_Mutation p.R373* 0.10 TCGA-CD-A4MG-01 6 110991683 110991683 C T CDK19 Missense_Mutation p.S89N 0.18 tolerated(0.22) benign(0.008) TCGA-CD-A4MG-01 6 111701188 111701188 T - REV3L Frame_Shift_Del p.K484Rfs*33 0.08 TCGA-CD-A4MG-01 6 111880506 111880506 A - TRAF3IP2 3'UTR 0.25 TCGA-CD-A4MG-01 6 112385971 112385971 T C WISP3 Silent p.V138V 0.18 TCGA-CD-A4MG-01 6 112462050 112462050 T C LAMA4 Missense_Mutation p.K963R 0.10 deleterious(0.01) probably_damaging(0.947) TCGA-CD-A4MG-01 6 112508695 112508695 T C LAMA4 Missense_Mutation p.H308R 0.09 tolerated(0.19) benign(0.201) TCGA-CD-A4MG-01 6 116560165 116560165 T - NT5DC1 Frame_Shift_Del p.F379Lfs*74 0.20 TCGA-CD-A4MG-01 6 116599992 116599992 C T TSPYL1 Silent p.K334K 0.26 TCGA-CD-A4MG-01 6 116949323 116949323 C T RSPH4A Nonsense_Mutation p.R485* 0.26 TCGA-CD-A4MG-01 6 117591786 117591786 C A VGLL2 Missense_Mutation p.L158M 0.40 deleterious(0.02) probably_damaging(0.972) TCGA-CD-A4MG-01 6 119300538 119300538 G T FAM184A Missense_Mutation p.A816D 0.29 deleterious(0.01) probably_damaging(0.962) TCGA-CD-A4MG-01 6 12121739 12121739 T C HIVEP1 Missense_Mutation p.S571P 0.11 deleterious(0.02) benign(0.157) TCGA-CD-A4MG-01 6 12122061 12122061 G A HIVEP1 Missense_Mutation p.R678H 0.11 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MG-01 6 121412156 121412157 - A TBC1D32 Frame_Shift_Ins p.W1166Lfs*22 0.08 TCGA-CD-A4MG-01 6 125231565 125231565 A - RP11-510H23.1 RNA 0.36 TCGA-CD-A4MG-01 6 127775049 127775049 G A KIAA0408 Silent p.D26D 0.30 TCGA-CD-A4MG-01 6 129826416 129826417 - A LAMA2 Frame_Shift_Ins p.A2876Sfs*30 0.18 TCGA-CD-A4MG-01 6 132031693 132031693 T G CTAGE9 Missense_Mutation p.E155D 0.14 deleterious(0.05) benign(0.16) TCGA-CD-A4MG-01 6 133097497 133097497 T C SLC18B1 Silent p.P289P 0.24 TCGA-CD-A4MG-01 6 134210812 134210812 C T TCF21 Nonsense_Mutation p.R93* 0.25 TCGA-CD-A4MG-01 6 136904865 136904865 G A MAP3K5 Missense_Mutation p.P1080L 0.28 tolerated(0.48) benign(0.001) TCGA-CD-A4MG-01 6 137322675 137322675 G T IL20RA 3'UTR 0.09 TCGA-CD-A4MG-01 6 137814991 137814991 A C OLIG3 Missense_Mutation p.L106R 0.08 deleterious(0) possibly_damaging(0.815) TCGA-CD-A4MG-01 6 137815186 137815186 G A OLIG3 Missense_Mutation p.S41L 0.21 deleterious(0.04) probably_damaging(0.953) TCGA-CD-A4MG-01 6 138491847 138491847 T C KIAA1244 Missense_Mutation p.L45P 0.33 deleterious(0) possibly_damaging(0.453) TCGA-CD-A4MG-01 6 143092525 143092525 G A HIVEP2 Silent p.S1117S 0.14 TCGA-CD-A4MG-01 6 144508363 144508363 C T STX11 Missense_Mutation p.A200V 0.17 deleterious(0.01) probably_damaging(0.934) TCGA-CD-A4MG-01 6 146125877 146125877 G A FBXO30 Silent p.C555C 0.40 TCGA-CD-A4MG-01 6 149959711 149959711 A - KATNA1 Intron 0.29 TCGA-CD-A4MG-01 6 151672364 151672364 A G AKAP12 Silent p.E946E 0.09 TCGA-CD-A4MG-01 6 151687265 151687265 G A ZBTB2 Silent p.A312A 0.23 TCGA-CD-A4MG-01 6 152697977 152697977 C A SYNE1 Missense_Mutation p.C3027F 0.37 probably_damaging(0.997) TCGA-CD-A4MG-01 6 152734582 152734582 A G SYNE1 Silent p.I2045I 0.34 TCGA-CD-A4MG-01 6 152832706 152832706 C T SYNE1 Intron 0.20 TCGA-CD-A4MG-01 6 154360691 154360691 C T OPRM1 Silent p.S97S 0.27 TCGA-CD-A4MG-01 6 15524603 15524603 C T DTNBP1 Intron 0.26 TCGA-CD-A4MG-01 6 158342683 158342683 G T SNX9 Missense_Mutation p.R357L 0.19 tolerated(0.31) possibly_damaging(0.528) TCGA-CD-A4MG-01 6 158834166 158834166 G A TULP4 Missense_Mutation p.V108M 0.21 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MG-01 6 158923753 158923753 G - TULP4 Frame_Shift_Del p.V1022Wfs*2 0.23 TCGA-CD-A4MG-01 6 160169514 160169514 A - WTAP Intron 0.62 TCGA-CD-A4MG-01 6 160208881 160208881 C T TCP1 Missense_Mutation p.G58D 0.11 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 6 160412301 160412301 C T IGF2R Missense_Mutation p.P79S 0.12 tolerated(0.78) benign(0) TCGA-CD-A4MG-01 6 160963770 160963770 C - LPA Frame_Shift_Del p.C1824Vfs*27 0.15 TCGA-CD-A4MG-01 6 161470941 161470941 T G MAP3K4 Missense_Mutation p.L546R 0.23 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MG-01 6 163149367 163149367 C T PACRG Missense_Mutation p.P34S 0.29 tolerated_low_confidence(0.28) benign(0.115) TCGA-CD-A4MG-01 6 16328200 16328200 C T ATXN1 Silent p.P114P 0.27 TCGA-CD-A4MG-01 6 163985687 163985687 T - QKI Intron 0.29 TCGA-CD-A4MG-01 6 165746446 165746446 A G PDE10A 3'UTR 0.15 TCGA-CD-A4MG-01 6 165844917 165844917 T C PDE10A Missense_Mutation p.Q246R 0.33 tolerated(0.77) benign(0.297) TCGA-CD-A4MG-01 6 17773734 17773734 C A KIF13A Missense_Mutation p.R1433S 0.28 tolerated(0.32) benign(0.005) TCGA-CD-A4MG-01 6 17788023 17788023 T - KIF13A Frame_Shift_Del p.V1116Sfs*23 0.15 TCGA-CD-A4MG-01 6 24843728 24843728 G A FAM65B Missense_Mutation p.P428S 0.18 tolerated(0.21) possibly_damaging(0.897) TCGA-CD-A4MG-01 6 26157216 26157216 A G HIST1H1E Missense_Mutation p.K200E 0.20 deleterious(0.03) unknown(0) TCGA-CD-A4MG-01 6 26598159 26598161 AAG - ABT1 In_Frame_Del p.K89del 0.28 TCGA-CD-A4MG-01 6 27369041 27369041 A G ZNF391 Missense_Mutation p.I298V 0.08 tolerated(0.06) benign(0.007) TCGA-CD-A4MG-01 6 27860579 27860579 G A HIST1H2AM Missense_Mutation p.L117F 0.07 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-CD-A4MG-01 6 28967739 28967739 C A ZNF311 Missense_Mutation p.Q59H 0.38 tolerated(0.56) benign(0.002) TCGA-CD-A4MG-01 6 30668224 30668224 A - MDC1 3'UTR 0.24 TCGA-CD-A4MG-01 6 30675204 30675204 G A MDC1 Missense_Mutation p.A1014V 0.16 tolerated(0.1) benign(0.091) TCGA-CD-A4MG-01 6 30679786 30679786 G T MDC1 Missense_Mutation p.L645I 0.14 tolerated(0.2) benign(0.022) TCGA-CD-A4MG-01 6 30681028 30681028 C T MDC1 Missense_Mutation p.E231K 0.40 tolerated(0.29) benign(0.049) TCGA-CD-A4MG-01 6 30881608 30881608 C A GTF2H4 Missense_Mutation p.L413M 0.42 deleterious(0.04) probably_damaging(0.98) TCGA-CD-A4MG-01 6 3105859 3105859 T C RIPK1 Missense_Mutation p.Y384H 0.29 deleterious(0) probably_damaging(0.992) TCGA-CD-A4MG-01 6 31323216 31323216 C T HLA-B Missense_Mutation p.R258K 0.30 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CD-A4MG-01 6 31636368 31636368 C T CSNK2B-LY6G5B-1181 Silent p.A76A 0.25 TCGA-CD-A4MG-01 6 31660761 31660761 G A ABHD16A Intron 0.21 TCGA-CD-A4MG-01 6 31753385 31753385 C T VARS Missense_Mutation p.R409H 0.42 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 6 31765430 31765430 A - LSM2 3'UTR 0.25 TCGA-CD-A4MG-01 6 31924499 31924499 G A NELFE Missense_Mutation p.R88C 0.27 deleterious(0) probably_damaging(0.983) TCGA-CD-A4MG-01 6 31935845 31935845 G A SKIV2L Silent p.Q948Q 0.30 TCGA-CD-A4MG-01 6 32036449 32036449 C T TNXB Missense_Mutation p.A1980T 0.12 benign(0.006) TCGA-CD-A4MG-01 6 32064222 32064222 A C TNXB Missense_Mutation p.C470G 0.10 probably_damaging(0.943) TCGA-CD-A4MG-01 6 32159258 32159258 C A GPSM3 Missense_Mutation p.R123L 0.29 deleterious(0) probably_damaging(0.982) TCGA-CD-A4MG-01 6 33136750 33136751 - G COL11A2 Frame_Shift_Ins p.G1193Wfs*12 0.22 TCGA-CD-A4MG-01 6 33383637 33383637 C - PHF1 Frame_Shift_Del p.H491Tfs*3 0.25 TCGA-CD-A4MG-01 6 34846204 34846204 T C TAF11 3'UTR 0.30 TCGA-CD-A4MG-01 6 35195381 35195381 C T SCUBE3 Missense_Mutation p.T37I 0.34 tolerated(0.13) possibly_damaging(0.833) TCGA-CD-A4MG-01 6 35216506 35216506 T - SCUBE3 3'UTR 0.24 TCGA-CD-A4MG-01 6 36652093 36652093 G A CDKN1A Missense_Mutation p.G72D 0.21 tolerated(0.44) benign(0.024) TCGA-CD-A4MG-01 6 36823635 36823635 C T PPIL1 Missense_Mutation p.R152H 0.21 deleterious(0.01) benign(0.281) TCGA-CD-A4MG-01 6 37140782 37140782 G A PIM1 Silent p.V206V 0.14 TCGA-CD-A4MG-01 6 38565763 38565763 G A BTBD9 Silent p.G36G 0.26 TCGA-CD-A4MG-01 6 38831703 38831703 T C DNAH8 Missense_Mutation p.L1905S 0.40 probably_damaging(1) TCGA-CD-A4MG-01 6 39835331 39835331 A G DAAM2 Silent p.L158L 0.15 TCGA-CD-A4MG-01 6 39847122 39847122 C A DAAM2 Missense_Mutation p.P572T 0.21 deleterious(0.03) benign(0.166) TCGA-CD-A4MG-01 6 41000848 41000848 C T UNC5CL Missense_Mutation p.E242K 0.38 tolerated(0.85) benign(0.024) TCGA-CD-A4MG-01 6 41048625 41048625 A G NFYA Missense_Mutation p.T51A 0.35 tolerated_low_confidence(0.05) unknown(0) TCGA-CD-A4MG-01 6 41309756 41309756 T C NCR2 Intron 0.08 TCGA-CD-A4MG-01 6 42930824 42930824 C T GNMT Missense_Mutation p.H156Y 0.44 tolerated(0.41) benign(0.061) TCGA-CD-A4MG-01 6 42931117 42931117 G A GNMT Missense_Mutation p.A216T 0.34 tolerated(0.11) benign(0.011) TCGA-CD-A4MG-01 6 43010844 43010844 T C CUL7 Missense_Mutation p.T1228A 0.18 tolerated(0.46) benign(0.055) TCGA-CD-A4MG-01 6 43013343 43013343 G A CUL7 Silent p.R1032R 0.23 TCGA-CD-A4MG-01 6 43160803 43160803 G A CUL9 Missense_Mutation p.V749M 0.29 deleterious(0.02) probably_damaging(0.982) TCGA-CD-A4MG-01 6 43174137 43174137 T C CUL9 Missense_Mutation p.S1701P 0.40 deleterious(0.02) probably_damaging(0.991) TCGA-CD-A4MG-01 6 43250478 43250478 C T TTBK1 Missense_Mutation p.A667V 0.29 benign(0.004) TCGA-CD-A4MG-01 6 43252036 43252036 A G TTBK1 Silent p.T1186T 0.19 TCGA-CD-A4MG-01 6 43322761 43322761 C T ZNF318 Missense_Mutation p.A771T 0.22 benign(0.075) TCGA-CD-A4MG-01 6 43400685 43400685 G A ABCC10 Missense_Mutation p.G323S 0.29 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 6 43413629 43413629 C T ABCC10 Missense_Mutation p.A1108V 0.08 deleterious(0) possibly_damaging(0.893) TCGA-CD-A4MG-01 6 44218839 44218839 C T HSP90AB1 Missense_Mutation p.R338W 0.33 deleterious(0) possibly_damaging(0.835) TCGA-CD-A4MG-01 6 44268923 44268923 C - AARS2 Frame_Shift_Del p.K922Rfs*55 0.23 TCGA-CD-A4MG-01 6 45514719 45514719 A G RUNX2 Missense_Mutation p.T415A 0.25 tolerated(0.37) benign(0.376) TCGA-CD-A4MG-01 6 50791415 50791415 G A TFAP2B Missense_Mutation p.R126Q 0.45 tolerated(0.12) benign(0.286) TCGA-CD-A4MG-01 6 51735403 51735403 G T PKHD1 Missense_Mutation p.P2462H 0.11 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 6 56481507 56481507 C - DST Intron 0.08 TCGA-CD-A4MG-01 6 56505071 56505071 A G DST Missense_Mutation p.L250S 0.08 benign(0.077) TCGA-CD-A4MG-01 6 64394096 64394097 - A PHF3 Frame_Shift_Ins p.A161Sfs*10 0.24 TCGA-CD-A4MG-01 6 64410295 64410295 T C PHF3 Missense_Mutation p.M1013T 0.36 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 6 70071100 70071100 C T BAI3 Missense_Mutation p.P1312L 0.15 deleterious(0) probably_damaging(0.997) TCGA-CD-A4MG-01 6 70942395 70942395 A G COL9A1 Silent p.P798P 0.31 TCGA-CD-A4MG-01 6 71236346 71236346 A G FAM135A Missense_Mutation p.N1187D 0.10 tolerated(0.48) benign(0.14) TCGA-CD-A4MG-01 6 7211914 7211914 A G RREB1 Missense_Mutation p.M227V 0.27 deleterious(0.04) benign(0.031) TCGA-CD-A4MG-01 6 7229398 7229398 G A RREB1 Missense_Mutation p.D356N 0.27 deleterious(0.05) benign(0.326) TCGA-CD-A4MG-01 6 7230308 7230308 G A RREB1 Missense_Mutation p.R659H 0.38 deleterious(0) probably_damaging(0.996) TCGA-CD-A4MG-01 6 73332154 73332154 C T KCNQ5 Silent p.R79R 0.30 TCGA-CD-A4MG-01 6 7370300 7370300 T C CAGE1 Splice_Site p.X583_splice 0.13 TCGA-CD-A4MG-01 6 74351534 74351534 C - SLC17A5 Frame_Shift_Del p.M137Cfs*3 0.25 TCGA-CD-A4MG-01 6 7583974 7583974 G A DSP Missense_Mutation p.R2160Q 0.25 benign(0.351) TCGA-CD-A4MG-01 6 7584598 7584598 T C DSP Missense_Mutation p.L2368S 0.20 probably_damaging(1) TCGA-CD-A4MG-01 6 75851781 75851781 C - COL12A1 Frame_Shift_Del p.E1642Sfs*5 0.12 TCGA-CD-A4MG-01 6 76608118 76608118 T - MYO6 Frame_Shift_Del p.L1057* 0.21 TCGA-CD-A4MG-01 6 76715171 76715173 AGG - IMPG1 In_Frame_Del p.L323del 0.09 TCGA-CD-A4MG-01 6 80197085 80197085 A - LCA5 Frame_Shift_Del p.L577Wfs*16 0.19 TCGA-CD-A4MG-01 6 80715547 80715547 T - TTK Intron 0.22 TCGA-CD-A4MG-01 6 80721602 80721602 G A TTK Splice_Site p.X268_splice 0.13 TCGA-CD-A4MG-01 6 83900647 83900647 G A PGM3 Nonsense_Mutation p.R57* 0.14 TCGA-CD-A4MG-01 6 83905457 83905457 A G RWDD2A Silent p.P115P 0.25 TCGA-CD-A4MG-01 6 84862601 84862601 T C KIAA1009 Missense_Mutation p.K1098E 0.15 tolerated(0.43) benign(0.002) TCGA-CD-A4MG-01 6 84862646 84862646 C T KIAA1009 Missense_Mutation p.A1083T 0.31 tolerated(0.72) benign(0.019) TCGA-CD-A4MG-01 6 86223788 86223788 C A SNX14 Missense_Mutation p.D853Y 0.23 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 6 86329093 86329093 C A SYNCRIP Nonsense_Mutation p.E351* 0.19 TCGA-CD-A4MG-01 6 87969483 87969484 - A ZNF292 Frame_Shift_Ins p.S2049Kfs*3 0.45 TCGA-CD-A4MG-01 6 88853738 88853738 G A CNR1 Missense_Mutation p.A419V 0.23 tolerated(0.22) benign(0.049) TCGA-CD-A4MG-01 6 88853864 88853864 G A CNR1 Missense_Mutation p.T377M 0.25 deleterious(0.03) probably_damaging(0.997) TCGA-CD-A4MG-01 6 89872023 89872023 T - PM20D2 3'UTR 0.26 TCGA-CD-A4MG-01 6 90009487 90009487 C T GABRR2 Missense_Mutation p.A71T 0.20 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 6 90276717 90276717 G A ANKRD6 Missense_Mutation p.A8T 0.46 tolerated(0.21) possibly_damaging(0.787) TCGA-CD-A4MG-01 6 90333705 90333705 C - ANKRD6 Frame_Shift_Del p.P384Hfs*21 0.18 TCGA-CD-A4MG-01 6 90415853 90415853 A - MDN1 Frame_Shift_Del p.F2691Lfs*7 0.16 TCGA-CD-A4MG-01 6 90452930 90452930 C T MDN1 Missense_Mutation p.G1463S 0.15 benign(0.053) TCGA-CD-A4MG-01 6 96054112 96054112 A C MANEA Missense_Mutation p.E407A 0.09 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MG-01 7 100284395 100284395 C T GIGYF1 Missense_Mutation p.A191T 0.28 tolerated(1) unknown(0) TCGA-CD-A4MG-01 7 100285731 100285731 A G GIGYF1 Missense_Mutation p.L13P 0.25 deleterious(0) unknown(0) TCGA-CD-A4MG-01 7 100454755 100454755 C G SLC12A9 Missense_Mutation p.H238Q 0.18 tolerated(0.19) benign(0.034) TCGA-CD-A4MG-01 7 100683678 100683678 T A MUC17 Missense_Mutation p.V2994D 0.07 probably_damaging(0.977) TCGA-CD-A4MG-01 7 100686959 100686959 G A MUC17 Missense_Mutation p.A4088T 0.28 unknown(0) TCGA-CD-A4MG-01 7 100802359 100802359 T C AP1S1 Missense_Mutation p.I104T 0.16 deleterious(0) probably_damaging(0.997) TCGA-CD-A4MG-01 7 101845303 101845304 - C CUX1 Frame_Shift_Ins p.L922Pfs*43 0.16 TCGA-CD-A4MG-01 7 102108614 102108614 G A LRWD1 Missense_Mutation p.A262T 0.12 tolerated(0.42) possibly_damaging(0.483) TCGA-CD-A4MG-01 7 102113048 102113048 C T LRWD1 Missense_Mutation p.A561V 0.30 deleterious(0.02) benign(0.002) TCGA-CD-A4MG-01 7 102114089 102114089 C T POLR2J 3'UTR 0.09 TCGA-CD-A4MG-01 7 1026412 1026412 C T CYP2W1 Silent p.D266D 0.26 TCGA-CD-A4MG-01 7 102962507 102962507 C A DNAJC2 Missense_Mutation p.A319S 0.33 tolerated(0.22) benign(0.005) TCGA-CD-A4MG-01 7 103137062 103137062 C A RELN Missense_Mutation p.G3035V 0.17 deleterious(0.01) probably_damaging(0.939) TCGA-CD-A4MG-01 7 105187419 105187419 C A RINT1 Missense_Mutation p.S193Y 0.23 tolerated(0.06) benign(0.005) TCGA-CD-A4MG-01 7 105190859 105190859 G A RINT1 Missense_Mutation p.G420D 0.14 tolerated(0.59) benign(0.003) TCGA-CD-A4MG-01 7 106508571 106508571 G A PIK3CG Missense_Mutation p.A189T 0.13 tolerated(0.56) benign(0.002) TCGA-CD-A4MG-01 7 107596053 107596053 C T LAMB1 Missense_Mutation p.D905N 0.19 tolerated(0.87) benign(0.2) TCGA-CD-A4MG-01 7 111372307 111372307 G A DOCK4 Missense_Mutation p.S1810L 0.18 tolerated_low_confidence(0.25) benign(0.014) TCGA-CD-A4MG-01 7 111580273 111580273 T - DOCK4 Frame_Shift_Del p.K290Rfs*23 0.18 TCGA-CD-A4MG-01 7 112112339 112112339 A - IFRD1 Frame_Shift_Del p.K371Nfs*35 0.17 TCGA-CD-A4MG-01 7 112461761 112461761 T G C7orf60 3'UTR 0.22 TCGA-CD-A4MG-01 7 11415500 11415500 T - THSD7A Frame_Shift_Del p.K1632Sfs*13 0.12 TCGA-CD-A4MG-01 7 117307184 117307184 T C CFTR 3'UTR 0.31 TCGA-CD-A4MG-01 7 117432590 117432590 G C CTTNBP2 Missense_Mutation p.S220R 0.11 deleterious(0.05) benign(0.12) TCGA-CD-A4MG-01 7 117450890 117450890 T C CTTNBP2 Missense_Mutation p.M115V 0.19 tolerated(0.08) probably_damaging(0.997) TCGA-CD-A4MG-01 7 117876853 117876853 T C ANKRD7 Silent p.L195L 0.07 TCGA-CD-A4MG-01 7 119915718 119915718 C T KCND2 Silent p.Y344Y 0.29 TCGA-CD-A4MG-01 7 120764394 120764394 T - CPED1 Frame_Shift_Del p.F311Lfs*5 0.17 TCGA-CD-A4MG-01 7 121678929 121678929 G A PTPRZ1 Missense_Mutation p.V1830M 0.22 deleterious(0.02) benign(0.239) TCGA-CD-A4MG-01 7 121684548 121684548 C T PTPRZ1 Missense_Mutation p.H2004Y 0.27 deleterious(0.03) benign(0.006) TCGA-CD-A4MG-01 7 122194638 122194638 G A CADPS2 Nonsense_Mutation p.R481* 0.28 TCGA-CD-A4MG-01 7 12675760 12675760 G T SCIN Missense_Mutation p.Q470H 0.37 deleterious(0.01) probably_damaging(0.991) TCGA-CD-A4MG-01 7 128447569 128447569 T C CCDC136 Silent p.I525I 0.23 TCGA-CD-A4MG-01 7 128470594 128470594 C T FLNC 5'UTR 0.29 TCGA-CD-A4MG-01 7 128630033 128630033 G A TNPO3 Nonsense_Mutation p.R494* 0.13 TCGA-CD-A4MG-01 7 129040190 129040190 A G AHCYL2 Missense_Mutation p.R295G 0.16 deleterious(0.01) possibly_damaging(0.533) TCGA-CD-A4MG-01 7 129919461 129919461 T C CPA2 Missense_Mutation p.Y316H 0.29 deleterious(0.02) probably_damaging(0.998) TCGA-CD-A4MG-01 7 130027882 130027882 C A CPA1 3'UTR 0.07 TCGA-CD-A4MG-01 7 131122564 131122564 G A MKLN1 Silent p.S327S 0.19 TCGA-CD-A4MG-01 7 131831420 131831420 C T PLXNA4 Missense_Mutation p.R1635H 0.09 deleterious(0.02) benign(0.185) TCGA-CD-A4MG-01 7 134849303 134849303 G A TMEM140 Missense_Mutation p.G37D 0.06 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 7 135047842 135047842 C A CNOT4 Missense_Mutation p.G646V 0.20 tolerated_low_confidence(0.21) benign(0.018) TCGA-CD-A4MG-01 7 135258404 135258404 A - NUP205 Frame_Shift_Del p.N60Mfs*70 0.12 TCGA-CD-A4MG-01 7 136700150 136700150 T - CHRM2 Frame_Shift_Del p.S182Pfs*18 0.20 TCGA-CD-A4MG-01 7 136936035 136936035 G A PTN Silent p.C131C 0.22 TCGA-CD-A4MG-01 7 138417780 138417780 G T ATP6V0A4 Missense_Mutation p.L584M 0.21 tolerated(0.13) probably_damaging(0.984) TCGA-CD-A4MG-01 7 138603524 138603524 A - KIAA1549 Frame_Shift_Del p.L283* 0.13 TCGA-CD-A4MG-01 7 138968105 138968106 - A UBN2 Frame_Shift_Ins p.L821Tfs*46 0.17 TCGA-CD-A4MG-01 7 139083425 139083425 T - LUC7L2 Frame_Shift_Del p.F147Sfs*28 0.12 TCGA-CD-A4MG-01 7 139168372 139168372 T C KLRG2 Missense_Mutation p.E6G 0.19 tolerated_low_confidence(0.1) benign(0.006) TCGA-CD-A4MG-01 7 139798732 139798732 T C KDM7A Missense_Mutation p.E622G 0.26 tolerated(0.07) benign(0.075) TCGA-CD-A4MG-01 7 139829334 139829334 G T KDM7A Missense_Mutation p.P173H 0.23 deleterious(0) probably_damaging(0.996) TCGA-CD-A4MG-01 7 139829343 139829343 A C KDM7A Missense_Mutation p.L170R 0.20 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MG-01 7 140273781 140273781 G A DENND2A Nonsense_Mutation p.R425* 0.24 TCGA-CD-A4MG-01 7 141736642 141736642 T C MGAM Missense_Mutation p.F699S 0.20 deleterious(0) probably_damaging(0.97) TCGA-CD-A4MG-01 7 142494708 142494708 C T TRBJ2-4 Missense_Mutation p.A10V 0.22 unknown(0) TCGA-CD-A4MG-01 7 142561975 142561975 C T EPHB6 Silent p.D139D 0.15 TCGA-CD-A4MG-01 7 142564248 142564248 T C EPHB6 Missense_Mutation p.V491A 0.19 deleterious(0.01) probably_damaging(0.983) TCGA-CD-A4MG-01 7 142658034 142658034 G T KEL Missense_Mutation p.N127K 0.23 tolerated(0.93) benign(0.008) TCGA-CD-A4MG-01 7 143807556 143807556 C T OR2A2 Missense_Mutation p.A294V 0.19 tolerated(0.05) benign(0.025) TCGA-CD-A4MG-01 7 14647098 14647098 C T DGKB Missense_Mutation p.R466H 0.13 deleterious(0) possibly_damaging(0.658) TCGA-CD-A4MG-01 7 1484710 1484710 C T MICALL2 Silent p.T332T 0.50 TCGA-CD-A4MG-01 7 148876528 148876528 C T ZNF398 Missense_Mutation p.R522C 0.19 tolerated(0.08) probably_damaging(0.998) TCGA-CD-A4MG-01 7 149191461 149191461 G A ZNF746 Missense_Mutation p.A53V 0.14 tolerated(0.32) benign(0.13) TCGA-CD-A4MG-01 7 150416146 150416146 G T GIMAP1 Missense_Mutation p.R4M 0.19 deleterious(0.01) possibly_damaging(0.873) TCGA-CD-A4MG-01 7 150417152 150417152 T C GIMAP1 Silent p.A20A 0.24 TCGA-CD-A4MG-01 7 150418017 150418017 C T GIMAP1 3'UTR 0.25 TCGA-CD-A4MG-01 7 150730732 150730732 G A ABCB8 Missense_Mutation p.V46M 0.19 tolerated_low_confidence(0.22) benign(0.006) TCGA-CD-A4MG-01 7 150742338 150742338 G A ABCB8 Missense_Mutation p.A687T 0.25 tolerated(0.4) benign(0.052) TCGA-CD-A4MG-01 7 150754240 150754240 G A CDK5 Silent p.Y15Y 0.17 TCGA-CD-A4MG-01 7 150935383 150935383 C - CHPF2 Frame_Shift_Del p.S648Pfs*13 0.16 TCGA-CD-A4MG-01 7 150935685 150935685 G A CHPF2 Missense_Mutation p.R746H 0.26 tolerated(0.43) benign(0.092) TCGA-CD-A4MG-01 7 151053255 151053255 G C NUB1 Missense_Mutation p.D238H 0.33 deleterious(0) possibly_damaging(0.694) TCGA-CD-A4MG-01 7 1518062 1518062 C T INTS1 Missense_Mutation p.V1524I 0.22 tolerated_low_confidence(0.59) benign(0.001) TCGA-CD-A4MG-01 7 151859372 151859374 CAG - KMT2C In_Frame_Del p.A3763del 0.15 TCGA-CD-A4MG-01 7 1519094 1519094 G A INTS1 Missense_Mutation p.P1434L 0.28 deleterious(0) possibly_damaging(0.781) TCGA-CD-A4MG-01 7 154379692 154379692 A G DPP6 Intron 0.25 TCGA-CD-A4MG-01 7 155595711 155595711 C T SHH Silent p.P424P 0.22 TCGA-CD-A4MG-01 7 157046698 157046698 C T UBE3C Silent p.N915N 0.23 TCGA-CD-A4MG-01 7 158695164 158695164 A - WDR60 Frame_Shift_Del p.K414Rfs*22 0.22 TCGA-CD-A4MG-01 7 158704353 158704353 A - WDR60 Frame_Shift_Del p.N527Ifs*23 0.29 TCGA-CD-A4MG-01 7 16913426 16913426 C A AGR3 Missense_Mutation p.G51C 0.18 deleterious(0) probably_damaging(0.992) TCGA-CD-A4MG-01 7 17861275 17861275 C T SNX13 Intron 0.18 TCGA-CD-A4MG-01 7 1997278 1997278 G A MAD1L1 Missense_Mutation p.R528W 0.17 deleterious(0) possibly_damaging(0.898) TCGA-CD-A4MG-01 7 20406735 20406735 A G ITGB8 Missense_Mutation p.H105R 0.20 tolerated(0.28) benign(0.001) TCGA-CD-A4MG-01 7 20418820 20418820 T - ITGB8 Frame_Shift_Del p.F180Sfs*37 0.08 TCGA-CD-A4MG-01 7 20441713 20441713 T C ITGB8 Missense_Mutation p.F551L 0.11 deleterious(0) probably_damaging(0.998) TCGA-CD-A4MG-01 7 20706395 20706395 A T ABCB5 Intron 0.21 TCGA-CD-A4MG-01 7 20778638 20778638 C T ABCB5 Missense_Mutation p.A967V 0.42 tolerated(0.06) benign(0.041) TCGA-CD-A4MG-01 7 21639578 21639578 A G DNAH11 Silent p.Q947Q 0.19 TCGA-CD-A4MG-01 7 21784143 21784143 G T DNAH11 Missense_Mutation p.D2755Y 0.29 probably_damaging(1) TCGA-CD-A4MG-01 7 21940892 21940892 T C DNAH11 3'UTR 0.10 TCGA-CD-A4MG-01 7 22162082 22162082 A G RAPGEF5 Missense_Mutation p.V712A 0.26 deleterious(0) benign(0.09) TCGA-CD-A4MG-01 7 22197474 22197474 T - RAPGEF5 Frame_Shift_Del p.K366Rfs*22 0.08 TCGA-CD-A4MG-01 7 22532994 22532994 G A STEAP1B Silent p.Y182Y 0.18 TCGA-CD-A4MG-01 7 2290474 2290474 A G NUDT1 Silent p.P126P 0.05 TCGA-CD-A4MG-01 7 2290630 2290630 G A NUDT1 Silent p.T178T 0.25 TCGA-CD-A4MG-01 7 23296675 23296675 C A GPNMB Missense_Mutation p.H178N 0.22 deleterious(0.04) benign(0.077) TCGA-CD-A4MG-01 7 23300169 23300169 C G GPNMB Silent p.V265V 0.20 TCGA-CD-A4MG-01 7 2581015 2581015 C - BRAT1 Frame_Shift_Del p.G413Afs*34 0.30 TCGA-CD-A4MG-01 7 26236958 26236958 G A HNRNPA2B1 Missense_Mutation p.P93S 0.22 deleterious(0.02) probably_damaging(0.962) TCGA-CD-A4MG-01 7 26245989 26245989 A - CBX3 Frame_Shift_Del p.M11Wfs*26 0.15 TCGA-CD-A4MG-01 7 2701302 2701302 T C TTYH3 Missense_Mutation p.Y501H 0.22 deleterious(0) probably_damaging(0.959) TCGA-CD-A4MG-01 7 27134370 27134370 G A HOXA1 Missense_Mutation p.R233C 0.16 deleterious(0) probably_damaging(0.988) TCGA-CD-A4MG-01 7 27168942 27168942 C T HOXA4 Missense_Mutation p.A289T 0.21 tolerated(0.84) benign(0.018) TCGA-CD-A4MG-01 7 28848848 28848848 G A CREB5 Silent p.Q357Q 0.28 TCGA-CD-A4MG-01 7 28848864 28848864 G - CREB5 Frame_Shift_Del p.R365Afs*6 0.09 TCGA-CD-A4MG-01 7 31126567 31126568 TG - ADCYAP1R1 Frame_Shift_Del p.V281Dfs*11 0.19 TCGA-CD-A4MG-01 7 32598822 32598822 C T AVL9 Missense_Mutation p.R321C 0.10 deleterious(0.01) possibly_damaging(0.713) TCGA-CD-A4MG-01 7 34724198 34724198 T C NPSR1 Missense_Mutation p.V61A 0.24 tolerated(0.28) benign(0.042) TCGA-CD-A4MG-01 7 36438710 36438710 G A ANLN Silent p.S65S 0.18 TCGA-CD-A4MG-01 7 36910080 36910080 A C ELMO1 Missense_Mutation p.L608R 0.32 deleterious(0) benign(0.051) TCGA-CD-A4MG-01 7 37382349 37382349 C T ELMO1 5'UTR 0.16 TCGA-CD-A4MG-01 7 38502674 38502674 C T AMPH Silent p.P263P 0.20 TCGA-CD-A4MG-01 7 39125534 39125534 T C POU6F2 Silent p.G31G 0.32 TCGA-CD-A4MG-01 7 40132784 40132784 T C CDK13 Silent p.H1212H 0.18 TCGA-CD-A4MG-01 7 40172675 40172675 C T MPLKIP Missense_Mutation p.G175R 0.25 deleterious(0) probably_damaging(0.991) TCGA-CD-A4MG-01 7 4185463 4185463 C T SDK1 Silent p.S1446S 0.23 TCGA-CD-A4MG-01 7 42005218 42005218 G A GLI3 Silent p.P1151P 0.26 TCGA-CD-A4MG-01 7 43351403 43351403 G A HECW1 Silent p.A23A 0.14 TCGA-CD-A4MG-01 7 43916374 43916374 A G URGCP Silent p.S896S 0.17 TCGA-CD-A4MG-01 7 44147101 44147101 A G AEBP1 Missense_Mutation p.H220R 0.22 tolerated_low_confidence(0.68) benign(0.001) TCGA-CD-A4MG-01 7 44467252 44467252 C T NUDCD3 Missense_Mutation p.R187Q 0.09 deleterious(0) benign(0.329) TCGA-CD-A4MG-01 7 44805866 44805866 C A ZMIZ2 Silent p.S782S 0.10 TCGA-CD-A4MG-01 7 45753552 45753552 A G ADCY1 Silent p.P1106P 0.13 TCGA-CD-A4MG-01 7 45930305 45930305 A - IGFBP1 Frame_Shift_Del p.K171Nfs*8 0.17 TCGA-CD-A4MG-01 7 47866996 47866996 C - PKD1L1 Frame_Shift_Del p.G2269Afs*6 0.12 TCGA-CD-A4MG-01 7 47921655 47921655 T C PKD1L1 Silent p.G1098G 0.28 TCGA-CD-A4MG-01 7 4830445 4830445 C T AP5Z1 Missense_Mutation p.P694S 0.11 tolerated(0.29) benign(0.013) TCGA-CD-A4MG-01 7 4955655 4955655 C T MMD2 Missense_Mutation p.A116T 0.19 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 7 50468030 50468030 C T IKZF1 Missense_Mutation p.A380V 0.13 tolerated(0.23) benign(0.004) TCGA-CD-A4MG-01 7 50514614 50514614 T - FIGNL1 Frame_Shift_Del p.K124Nfs*15 0.23 TCGA-CD-A4MG-01 7 50672995 50672995 C T GRB10 Missense_Mutation p.A461T 0.19 tolerated(0.22) benign(0.126) TCGA-CD-A4MG-01 7 5103612 5103613 - A RBAK Frame_Shift_Ins p.M177Nfs*3 0.10 TCGA-CD-A4MG-01 7 51111364 51111364 G A COBL Silent p.S374S 0.33 TCGA-CD-A4MG-01 7 53103709 53103709 C A POM121L12 Silent p.A115A 0.08 TCGA-CD-A4MG-01 7 55225437 55225437 C T EGFR Missense_Mutation p.T430I 0.24 tolerated(0.21) possibly_damaging(0.908) TCGA-CD-A4MG-01 7 55229247 55229247 G A EGFR Silent p.P518P 0.15 TCGA-CD-A4MG-01 7 5540534 5540534 C T FBXL18 Missense_Mutation p.V456M 0.12 deleterious(0.01) probably_damaging(0.965) TCGA-CD-A4MG-01 7 5540845 5540845 C T FBXL18 Missense_Mutation p.G352D 0.25 deleterious(0.01) probably_damaging(1) TCGA-CD-A4MG-01 7 56126070 56126071 - T CCT6A Frame_Shift_Ins p.Y250Lfs*14 0.16 TCGA-CD-A4MG-01 7 590056 590056 G A PRKAR1B 3'UTR 0.35 TCGA-CD-A4MG-01 7 6063150 6063150 G T AIMP2 Missense_Mutation p.G264V 0.29 deleterious(0) probably_damaging(0.954) TCGA-CD-A4MG-01 7 6193713 6193713 C T USP42 Missense_Mutation p.P843L 0.26 tolerated(0.67) benign(0.009) TCGA-CD-A4MG-01 7 63726784 63726784 A T ZNF679 Missense_Mutation p.H258L 0.11 deleterious(0) possibly_damaging(0.682) TCGA-CD-A4MG-01 7 6449537 6449537 G A DAGLB Silent p.S650S 0.22 TCGA-CD-A4MG-01 7 64526690 64526690 T - SNORA22 3'Flank 0.19 TCGA-CD-A4MG-01 7 65445306 65445306 A G GUSB Missense_Mutation p.Y101H 0.17 deleterious(0) probably_damaging(0.989) TCGA-CD-A4MG-01 7 65447029 65447029 G T GUSB Missense_Mutation p.R48S 0.22 deleterious(0.03) probably_damaging(0.999) TCGA-CD-A4MG-01 7 66548473 66548473 T C TYW1 Missense_Mutation p.M444T 0.14 tolerated(0.56) benign(0.016) TCGA-CD-A4MG-01 7 6730792 6730792 C T ZNF12 Missense_Mutation p.R594Q 0.30 tolerated(0.65) probably_damaging(0.975) TCGA-CD-A4MG-01 7 70250957 70250957 G A AUTS2 Silent p.P747P 0.18 TCGA-CD-A4MG-01 7 72350428 72350429 - G POM121 5'UTR 0.13 TCGA-CD-A4MG-01 7 72412463 72412463 C T POM121 Missense_Mutation p.P379L 0.24 deleterious(0) benign(0) TCGA-CD-A4MG-01 7 72419291 72419291 G A POM121 3'UTR 0.18 TCGA-CD-A4MG-01 7 73105315 73105316 - T WBSCR22 Frame_Shift_Ins p.A147Cfs*20 0.16 TCGA-CD-A4MG-01 7 73112225 73112225 G A WBSCR22 3'UTR 0.17 TCGA-CD-A4MG-01 7 73483152 73483152 C T ELN 3'UTR 0.22 TCGA-CD-A4MG-01 7 73483280 73483280 C T ELN 3'UTR 0.25 TCGA-CD-A4MG-01 7 73513362 73513362 C T LIMK1 Silent p.C134C 0.20 TCGA-CD-A4MG-01 7 73753188 73753188 C - CLIP2 Frame_Shift_Del p.P179Rfs*2 0.17 TCGA-CD-A4MG-01 7 74211866 74211866 G A GTF2IRD2 Missense_Mutation p.A662V 0.17 tolerated(0.05) possibly_damaging(0.587) TCGA-CD-A4MG-01 7 75050921 75050921 T G POM121C Missense_Mutation p.S872R 0.16 tolerated(0.08) possibly_damaging(0.729) TCGA-CD-A4MG-01 7 75601744 75601747 AGAG - POR Frame_Shift_Del p.E69Afs*7 0.29 TCGA-CD-A4MG-01 7 75933304 75933305 - C HSPB1 Frame_Shift_Ins p.G147Rfs*14 0.19 TCGA-CD-A4MG-01 7 76619615 76619615 G A UPK3B Intron 0.18 TCGA-CD-A4MG-01 7 780505 780505 G A HEATR2 Missense_Mutation p.R277H 0.18 deleterious(0.02) probably_damaging(0.943) TCGA-CD-A4MG-01 7 80378301 80378302 - T SEMA3C Frame_Shift_Ins p.N585Kfs*2 0.18 TCGA-CD-A4MG-01 7 8126172 8126172 A G GLCCI1 3'UTR 0.27 TCGA-CD-A4MG-01 7 82579421 82579421 C A PCLO Missense_Mutation p.G3495W 0.12 unknown(0) TCGA-CD-A4MG-01 7 82581681 82581681 G A PCLO Missense_Mutation p.A2863V 0.24 unknown(0) TCGA-CD-A4MG-01 7 82581762 82581762 T C PCLO Missense_Mutation p.Y2836C 0.18 unknown(0) TCGA-CD-A4MG-01 7 82997084 82997084 G T SEMA3E Missense_Mutation p.L716M 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-CD-A4MG-01 7 86493698 86493698 T - GRM3 3'UTR 0.10 TCGA-CD-A4MG-01 7 86813856 86813856 C T DMTF1 Missense_Mutation p.R322C 0.08 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 7 86978480 86978480 A - CROT Frame_Shift_Del p.K34Nfs*13 0.12 TCGA-CD-A4MG-01 7 88962741 88962741 G T ZNF804B Nonsense_Mutation p.G149* 0.31 TCGA-CD-A4MG-01 7 88965970 88965970 C A ZNF804B Missense_Mutation p.S1225Y 0.12 deleterious(0) possibly_damaging(0.907) TCGA-CD-A4MG-01 7 88966013 88966013 A G ZNF804B Silent p.S1239S 0.16 TCGA-CD-A4MG-01 7 88966093 88966093 A G ZNF804B Missense_Mutation p.H1266R 0.24 deleterious(0.04) benign(0.086) TCGA-CD-A4MG-01 7 89790371 89790371 G A STEAP1 Missense_Mutation p.V113I 0.19 tolerated(0.64) probably_damaging(0.99) TCGA-CD-A4MG-01 7 91641856 91641856 C T AKAP9 Silent p.C1144C 0.25 TCGA-CD-A4MG-01 7 91668044 91668044 A G AKAP9 Silent p.E1550E 0.09 TCGA-CD-A4MG-01 7 92027979 92027979 A G ANKIB1 Missense_Mutation p.S996G 0.27 tolerated_low_confidence(0.33) benign(0) TCGA-CD-A4MG-01 7 92134189 92134190 - T PEX1 Frame_Shift_Ins p.T643Nfs*21 0.16 TCGA-CD-A4MG-01 7 92735067 92735067 T - SAMD9 Frame_Shift_Del p.K115Rfs*14 0.14 TCGA-CD-A4MG-01 7 92838028 92838028 T C HEPACAM2 Missense_Mutation p.I293V 0.23 tolerated(0.19) probably_damaging(0.934) TCGA-CD-A4MG-01 7 92844875 92844875 T - HEPACAM2 Frame_Shift_Del p.N185Mfs*25 0.21 TCGA-CD-A4MG-01 7 94185017 94185017 T - CASD1 Frame_Shift_Del p.C783Vfs*21 0.16 TCGA-CD-A4MG-01 7 94740662 94740662 G A PPP1R9A Missense_Mutation p.R496H 0.19 deleterious(0) possibly_damaging(0.767) TCGA-CD-A4MG-01 7 94991719 94991719 A G PON3 Silent p.P287P 0.12 TCGA-CD-A4MG-01 7 95442521 95442521 T - DYNC1I1 Frame_Shift_Del p.L81* 0.17 TCGA-CD-A4MG-01 7 97841934 97841934 G A BHLHA15 Missense_Mutation p.V105M 0.13 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MG-01 7 97852330 97852330 C T TECPR1 Missense_Mutation p.R967H 0.21 deleterious(0) probably_damaging(0.997) TCGA-CD-A4MG-01 7 98574269 98574269 A G TRRAP Missense_Mutation p.N2701S 0.21 possibly_damaging(0.533) TCGA-CD-A4MG-01 7 98609709 98609709 A - TRRAP Frame_Shift_Del p.T3772Rfs*48 0.25 TCGA-CD-A4MG-01 7 99092078 99092078 T C ZNF394 Missense_Mutation p.K254E 0.22 tolerated(0.11) benign(0.13) TCGA-CD-A4MG-01 7 99161658 99161658 G A ZNF655 Intron 0.12 TCGA-CD-A4MG-01 7 99217354 99217354 G A ZSCAN25 Missense_Mutation p.R42Q 0.27 deleterious(0.02) probably_damaging(0.994) TCGA-CD-A4MG-01 7 99569446 99569446 C T AZGP1 Missense_Mutation p.S87N 0.07 tolerated(0.05) benign(0.015) TCGA-CD-A4MG-01 7 99654775 99654775 G T ZSCAN21 Missense_Mutation p.R49M 0.25 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MG-01 7 99696968 99696968 C T MCM7 Missense_Mutation p.R112Q 0.12 tolerated(0.16) benign(0.063) TCGA-CD-A4MG-01 7 99796125 99796125 G A STAG3 Silent p.A424A 0.20 TCGA-CD-A4MG-01 7 99821209 99821209 G A GATS 3'UTR 0.19 TCGA-CD-A4MG-01 7 99951085 99951085 C - PILRB 5'UTR 0.19 TCGA-CD-A4MG-01 8 10285672 10285672 C T MSRA Silent p.H186H 0.19 TCGA-CD-A4MG-01 8 103664221 103664221 C T KLF10 Silent p.A113A 0.12 TCGA-CD-A4MG-01 8 103852031 103852031 A - AZIN1 Frame_Shift_Del p.F41Lfs*9 0.16 TCGA-CD-A4MG-01 8 104415462 104415462 C T SLC25A32 Missense_Mutation p.R161Q 0.21 tolerated(0.18) benign(0.055) TCGA-CD-A4MG-01 8 104427572 104427572 T G DCAF13 Silent p.T118T 0.11 TCGA-CD-A4MG-01 8 10466703 10466703 G A RP1L1 Silent p.D1635D 0.24 TCGA-CD-A4MG-01 8 10470350 10470351 CT - RP1L1 Frame_Shift_Del p.R419Sfs*73 0.22 TCGA-CD-A4MG-01 8 104924330 104924330 G A RIMS2 Missense_Mutation p.R581H 0.16 deleterious_low_confidence(0.01) probably_damaging(0.96) TCGA-CD-A4MG-01 8 105509436 105509436 G A LRP12 Silent p.C448C 0.24 TCGA-CD-A4MG-01 8 105511744 105511744 A - LRP12 Frame_Shift_Del p.Q93Rfs*16 0.23 TCGA-CD-A4MG-01 8 109094921 109094921 C T RSPO2 5'UTR 0.34 TCGA-CD-A4MG-01 8 110539153 110539153 G C PKHD1L1 Missense_Mutation p.A4209P 0.11 deleterious_low_confidence(0.02) probably_damaging(0.915) TCGA-CD-A4MG-01 8 110587169 110587169 G A SYBU Missense_Mutation p.S653L 0.20 deleterious(0) probably_damaging(0.944) TCGA-CD-A4MG-01 8 113293470 113293470 A G CSMD3 Silent p.L3147L 0.19 TCGA-CD-A4MG-01 8 113364726 113364726 A G CSMD3 Silent p.P2058P 0.13 TCGA-CD-A4MG-01 8 113518988 113518988 C T CSMD3 Silent p.P1609P 0.21 TCGA-CD-A4MG-01 8 116427181 116427181 C A TRPS1 Missense_Mutation p.E985D 0.09 deleterious(0) probably_damaging(0.994) TCGA-CD-A4MG-01 8 116599543 116599543 G A TRPS1 Silent p.T795T 0.18 TCGA-CD-A4MG-01 8 11667360 11667360 G A FDFT1 Splice_Site p.X127_splice 0.34 TCGA-CD-A4MG-01 8 11689081 11689081 G T FDFT1 Missense_Mutation p.G312W 0.09 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 8 118830743 118830743 C T EXT1 Silent p.K521K 0.16 TCGA-CD-A4MG-01 8 120598486 120598486 G A ENPP2 Missense_Mutation p.A488V 0.16 deleterious(0.04) possibly_damaging(0.657) TCGA-CD-A4MG-01 8 120859283 120859283 C G DSCC1 Missense_Mutation p.S175T 0.12 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 8 121357800 121357800 G A COL14A1 Missense_Mutation p.R1692Q 0.13 deleterious(0) probably_damaging(0.997) TCGA-CD-A4MG-01 8 121463481 121463481 C T MTBP Missense_Mutation p.T115M 0.42 deleterious(0) benign(0.341) TCGA-CD-A4MG-01 8 124267534 124267534 C T ZHX1 Missense_Mutation p.R218H 0.22 tolerated(0.17) benign(0.001) TCGA-CD-A4MG-01 8 124787486 124787486 T C FAM91A1 Missense_Mutation p.M86T 0.18 tolerated(0.13) benign(0.039) TCGA-CD-A4MG-01 8 125499070 125499070 T C RNF139 Missense_Mutation p.F394L 0.22 tolerated(1) benign(0.002) TCGA-CD-A4MG-01 8 125568558 125568558 C - MTSS1 Frame_Shift_Del p.G440Efs*22 0.19 TCGA-CD-A4MG-01 8 126034042 126034042 C T SQLE Missense_Mutation p.A527V 0.18 deleterious(0.02) possibly_damaging(0.802) TCGA-CD-A4MG-01 8 131792713 131792713 G A ADCY8 Missense_Mutation p.R1227W 0.19 deleterious_low_confidence(0) benign(0.072) TCGA-CD-A4MG-01 8 133142016 133142016 A G KCNQ3 Silent p.I704I 0.21 TCGA-CD-A4MG-01 8 133836264 133836264 A - PHF20L1 Frame_Shift_Del p.V535* 0.31 TCGA-CD-A4MG-01 8 133900795 133900795 C T TG Missense_Mutation p.P915S 0.17 tolerated(0.55) benign(0.421) TCGA-CD-A4MG-01 8 133909917 133909917 C T TG Missense_Mutation p.R1009C 0.06 tolerated(0.06) possibly_damaging(0.875) TCGA-CD-A4MG-01 8 133925436 133925436 G T TG Missense_Mutation p.R1435M 0.26 deleterious(0.03) benign(0.03) TCGA-CD-A4MG-01 8 133961176 133961176 G T TG Nonsense_Mutation p.E1797* 0.20 TCGA-CD-A4MG-01 8 139164310 139164310 C T FAM135B Missense_Mutation p.S803N 0.27 tolerated(0.49) benign(0.001) TCGA-CD-A4MG-01 8 139890450 139890450 G T COL22A1 Silent p.T67T 0.44 TCGA-CD-A4MG-01 8 141461249 141461249 C T TRAPPC9 Missense_Mutation p.R173H 0.20 deleterious(0) probably_damaging(0.985) TCGA-CD-A4MG-01 8 141542059 141542059 C T AGO2 3'UTR 0.22 TCGA-CD-A4MG-01 8 142176477 142176477 G A DENND3 Missense_Mutation p.G501D 0.08 tolerated(0.6) benign(0.002) TCGA-CD-A4MG-01 8 144550640 144550640 A C ZC3H3 Missense_Mutation p.C673G 0.29 deleterious(0.01) probably_damaging(0.979) TCGA-CD-A4MG-01 8 144671963 144671963 C A EEF1D Missense_Mutation p.G97C 0.11 tolerated(0.06) benign(0.055) TCGA-CD-A4MG-01 8 144688837 144688837 T G PYCRL Missense_Mutation p.N129H 0.26 tolerated(0.16) benign(0.003) TCGA-CD-A4MG-01 8 144810228 144810228 C T FAM83H Missense_Mutation p.R468H 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-CD-A4MG-01 8 144891172 144891172 G A SCRIB Silent p.D574D 0.22 TCGA-CD-A4MG-01 8 144942815 144942815 G A EPPK1 Missense_Mutation p.A1536V 0.19 benign(0.083) TCGA-CD-A4MG-01 8 144993811 144993811 G A PLEC Missense_Mutation p.A3530V 0.26 probably_damaging(1) TCGA-CD-A4MG-01 8 144995199 144995199 C T PLEC Silent p.S3067S 0.15 TCGA-CD-A4MG-01 8 144995468 144995468 G A PLEC Missense_Mutation p.R2978C 0.14 probably_damaging(0.964) TCGA-CD-A4MG-01 8 145065718 145065718 C - GRINA Frame_Shift_Del p.N112Tfs*56 0.26 TCGA-CD-A4MG-01 8 145065770 145065771 TG - GRINA Splice_Site p.X127_splice 0.18 TCGA-CD-A4MG-01 8 145095886 145095886 C - SPATC1 Frame_Shift_Del p.P396Rfs*20 0.22 TCGA-CD-A4MG-01 8 145110070 145110070 C T OPLAH Silent p.Q757Q 0.21 TCGA-CD-A4MG-01 8 145111623 145111623 C T OPLAH Missense_Mutation p.R581H 0.21 deleterious(0.01) probably_damaging(0.987) TCGA-CD-A4MG-01 8 145139149 145139149 C T GPAA1 Silent p.N243N 0.08 TCGA-CD-A4MG-01 8 145139362 145139362 T C GPAA1 Missense_Mutation p.L287P 0.13 deleterious(0.01) possibly_damaging(0.893) TCGA-CD-A4MG-01 8 145512979 145512979 G - BOP1 Frame_Shift_Del p.L36Sfs*154 0.12 TCGA-CD-A4MG-01 8 145662380 145662380 T C TONSL Intron 0.26 TCGA-CD-A4MG-01 8 145665789 145665789 G - TONSL Frame_Shift_Del p.P412Rfs*31 0.16 TCGA-CD-A4MG-01 8 145689987 145689987 T C CYHR1 Silent p.R34R 0.19 TCGA-CD-A4MG-01 8 145735838 145735838 G A MFSD3 Missense_Mutation p.V260I 0.14 tolerated(0.13) benign(0.119) TCGA-CD-A4MG-01 8 145758543 145758543 G A ARHGAP39 Missense_Mutation p.A952V 0.24 deleterious(0.01) possibly_damaging(0.457) TCGA-CD-A4MG-01 8 15998359 15998359 C T MSR1 Intron 0.23 TCGA-CD-A4MG-01 8 17159785 17159785 A - MTMR7 Frame_Shift_Del p.W500Gfs*22 0.16 TCGA-CD-A4MG-01 8 17486274 17486274 C T PDGFRL Silent p.L262L 0.24 TCGA-CD-A4MG-01 8 18258079 18258079 T - NAT2 Frame_Shift_Del p.I189Nfs*17 0.20 TCGA-CD-A4MG-01 8 18430057 18430057 G C PSD3 Missense_Mutation p.T922S 0.26 tolerated(0.63) possibly_damaging(0.684) TCGA-CD-A4MG-01 8 18729717 18729717 C T PSD3 Silent p.A219A 0.17 TCGA-CD-A4MG-01 8 20007193 20007194 - A SLC18A1 Frame_Shift_Ins p.L380Ffs*55 0.12 TCGA-CD-A4MG-01 8 21978604 21978604 C T HR Missense_Mutation p.A781T 0.22 deleterious(0) probably_damaging(0.949) TCGA-CD-A4MG-01 8 22864672 22864673 - G RHOBTB2 Frame_Shift_Ins p.S331Lfs*16 0.19 TCGA-CD-A4MG-01 8 22874858 22874860 AGG - RHOBTB2 In_Frame_Del p.E710del 0.20 TCGA-CD-A4MG-01 8 22995437 22995437 G A TNFRSF10D Silent p.S369S 0.11 TCGA-CD-A4MG-01 8 23156409 23156411 TGT - LOXL2 In_Frame_Del p.N728del 0.22 TCGA-CD-A4MG-01 8 24771352 24771352 C T NEFM Missense_Mutation p.R16W 0.15 deleterious(0) unknown(0) TCGA-CD-A4MG-01 8 26149252 26149253 - C PPP2R2A 5'Flank 0.27 TCGA-CD-A4MG-01 8 26627968 26627968 C T ADRA1A Missense_Mutation p.V367M 0.18 tolerated(0.28) benign(0.075) TCGA-CD-A4MG-01 8 27288832 27288832 C T PTK2B Intron 0.19 TCGA-CD-A4MG-01 8 27456034 27456034 G T CLU Missense_Mutation p.P428H 0.22 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 8 27456151 27456151 A G CLU Missense_Mutation p.V389A 0.22 deleterious(0.01) probably_damaging(0.951) TCGA-CD-A4MG-01 8 27606032 27606032 C A CCDC25 Missense_Mutation p.G110C 0.12 deleterious(0.01) possibly_damaging(0.836) TCGA-CD-A4MG-01 8 28217189 28217189 A G ZNF395 Silent p.C131C 0.27 TCGA-CD-A4MG-01 8 28340947 28340947 G T FBXO16 Missense_Mutation p.P6H 0.17 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-CD-A4MG-01 8 28654143 28654143 G A INTS9 Silent p.S258S 0.11 TCGA-CD-A4MG-01 8 29207699 29207699 T C DUSP4 Missense_Mutation p.S33G 0.11 tolerated_low_confidence(0.38) benign(0.153) TCGA-CD-A4MG-01 8 3046483 3046483 C T CSMD1 Missense_Mutation p.G1817S 0.20 probably_damaging(0.956) TCGA-CD-A4MG-01 8 30699727 30699727 C T TEX15 Silent p.K2269K 0.09 TCGA-CD-A4MG-01 8 3200919 3200920 - T CSMD1 Frame_Shift_Ins p.N1176Kfs*2 0.18 TCGA-CD-A4MG-01 8 32453511 32453511 A - NRG1 Frame_Shift_Del p.K91Sfs*24 0.09 TCGA-CD-A4MG-01 8 32505649 32505649 A G NRG1 Intron 0.15 TCGA-CD-A4MG-01 8 33369577 33369577 G A TTI2 Silent p.C185C 0.08 TCGA-CD-A4MG-01 8 37699108 37699108 C - GPR124 Frame_Shift_Del p.P1086Lfs*217 0.19 TCGA-CD-A4MG-01 8 38126504 38126504 T C PPAPDC1B Missense_Mutation p.T27A 0.19 tolerated(0.08) benign(0.103) TCGA-CD-A4MG-01 8 38279325 38279325 G A FGFR1 Silent p.T388T 0.25 TCGA-CD-A4MG-01 8 39678684 39678684 A G ADAM2 Missense_Mutation p.V117A 0.20 deleterious(0) benign(0.04) TCGA-CD-A4MG-01 8 41790285 41790285 G A KAT6A Missense_Mutation p.S1818F 0.15 unknown(0) TCGA-CD-A4MG-01 8 41790549 41790549 C A KAT6A Missense_Mutation p.S1730I 0.07 unknown(0) TCGA-CD-A4MG-01 8 41800402 41800402 G A KAT6A Missense_Mutation p.S782F 0.12 probably_damaging(0.92) TCGA-CD-A4MG-01 8 43013831 43013831 C A HGSNAT Silent p.T116T 0.10 TCGA-CD-A4MG-01 8 48697726 48697726 G T PRKDC Silent p.P3684P 0.09 TCGA-CD-A4MG-01 8 48746911 48746911 C T PRKDC Silent p.P2665P 0.23 TCGA-CD-A4MG-01 8 49833854 49833854 G A SNAI2 5'UTR 0.22 TCGA-CD-A4MG-01 8 51705315 51705315 T - SNTG1 Frame_Shift_Del p.L495* 0.18 TCGA-CD-A4MG-01 8 52744118 52744118 T C PCMTD1 Missense_Mutation p.I198V 0.08 tolerated(0.28) benign(0.326) TCGA-CD-A4MG-01 8 53062481 53062482 - T ST18 Frame_Shift_Ins p.N621Kfs*14 0.23 TCGA-CD-A4MG-01 8 55542253 55542253 T A RP1 Nonsense_Mutation p.Y1937* 0.22 TCGA-CD-A4MG-01 8 6588288 6588288 C T AGPAT5 Missense_Mutation p.R116C 0.23 deleterious(0.04) probably_damaging(0.909) TCGA-CD-A4MG-01 8 67064625 67064625 A T TRIM55 Missense_Mutation p.E333D 0.20 tolerated(0.2) benign(0.002) TCGA-CD-A4MG-01 8 6735366 6735366 T C DEFB1 Missense_Mutation p.Y5C 0.15 tolerated(0.18) probably_damaging(0.926) TCGA-CD-A4MG-01 8 68007801 68007801 G A CSPP1 Missense_Mutation p.A262T 0.16 tolerated(0.65) benign(0.003) TCGA-CD-A4MG-01 8 68163614 68163614 C T ARFGEF1 Missense_Mutation p.A924T 0.26 deleterious(0.04) possibly_damaging(0.611) TCGA-CD-A4MG-01 8 68956788 68956788 G A PREX2 Silent p.T302T 0.14 TCGA-CD-A4MG-01 8 68992731 68992731 G A PREX2 Missense_Mutation p.D566N 0.18 deleterious(0) benign(0.341) TCGA-CD-A4MG-01 8 72755866 72755866 C T RP11-383H13.1 Missense_Mutation p.A77V 0.19 unknown(0) TCGA-CD-A4MG-01 8 72965032 72965032 G A RP11-383H13.1 3'UTR 0.27 TCGA-CD-A4MG-01 8 73480200 73480200 C T KCNB2 Silent p.C77C 0.18 TCGA-CD-A4MG-01 8 82752256 82752256 T C SNX16 5'UTR 0.16 TCGA-CD-A4MG-01 8 86358436 86358436 G T CA3 Missense_Mutation p.W191C 0.10 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 8 87076656 87076656 C A PSKH2 Missense_Mutation p.E130D 0.20 tolerated(0.22) benign(0.006) TCGA-CD-A4MG-01 8 88885901 88885901 C T DCAF4L2 Missense_Mutation p.G100D 0.14 deleterious(0) probably_damaging(0.979) TCGA-CD-A4MG-01 8 8998980 8998980 T - PPP1R3B Frame_Shift_Del p.K61Sfs*13 0.17 TCGA-CD-A4MG-01 8 91013752 91013752 T G DECR1 Missense_Mutation p.L11R 0.24 tolerated_low_confidence(0.41) benign(0) TCGA-CD-A4MG-01 8 95680402 95680402 C T ESRP1 Missense_Mutation p.A386V 0.24 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 8 97172764 97172764 G A GDF6 Missense_Mutation p.R53W 0.18 deleterious(0) probably_damaging(0.996) TCGA-CD-A4MG-01 8 98289664 98289664 G - TSPYL5 Frame_Shift_Del p.R137Afs*27 0.22 TCGA-CD-A4MG-01 8 99139937 99139937 G A POP1 Missense_Mutation p.G86E 0.17 deleterious(0) possibly_damaging(0.45) TCGA-CD-A4MG-01 8 99205152 99205152 A T NIPAL2 3'UTR 0.33 TCGA-CD-A4MG-01 9 101831994 101831994 C T COL15A1 Silent p.G1331G 0.27 TCGA-CD-A4MG-01 9 102677512 102677512 T - STX17 5'UTR 0.12 TCGA-CD-A4MG-01 9 104302779 104302779 A - RNF20 Frame_Shift_Del p.N103Tfs*87 0.14 TCGA-CD-A4MG-01 9 108424944 108424944 A G TAL2 Missense_Mutation p.K56R 0.32 tolerated(0.34) benign(0.381) TCGA-CD-A4MG-01 9 111853321 111853321 G A TMEM245 Missense_Mutation p.T344M 0.32 tolerated(0.07) benign(0.01) TCGA-CD-A4MG-01 9 112211195 112211195 A G PTPN3 Intron 0.33 TCGA-CD-A4MG-01 9 113431167 113431167 C T MUSK 5'UTR 0.25 TCGA-CD-A4MG-01 9 114246942 114246942 C T KIAA0368 Silent p.R28R 0.26 TCGA-CD-A4MG-01 9 116764290 116764290 G A ZNF618 Missense_Mutation p.G118R 0.34 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-CD-A4MG-01 9 117852842 117852842 T C TNC Silent p.T152T 0.08 TCGA-CD-A4MG-01 9 119568031 119568031 C T ASTN2 Missense_Mutation p.G708D 0.26 deleterious(0) unknown(0) TCGA-CD-A4MG-01 9 120053790 120053790 T A ASTN2 Missense_Mutation p.M149L 0.11 deleterious_low_confidence(0.04) benign(0.018) TCGA-CD-A4MG-01 9 123210316 123210316 A G CDK5RAP2 Missense_Mutation p.V961A 0.31 tolerated(0.56) benign(0.015) TCGA-CD-A4MG-01 9 123914741 123914741 T - CNTRL Intron 0.26 TCGA-CD-A4MG-01 9 123919750 123919750 A - CNTRL Frame_Shift_Del p.N1458Mfs*23 0.08 TCGA-CD-A4MG-01 9 12775777 12775777 C T LURAP1L Silent p.P21P 0.08 TCGA-CD-A4MG-01 9 127911822 127911822 A - PPP6C 3'UTR 0.79 TCGA-CD-A4MG-01 9 127982926 127982927 GA - RABEPK Frame_Shift_Del p.G161Cfs*13 0.23 TCGA-CD-A4MG-01 9 128001585 128001585 G T HSPA5 Missense_Mutation p.L211M 0.09 deleterious_low_confidence(0.04) possibly_damaging(0.471) TCGA-CD-A4MG-01 9 128268684 128268684 C T MAPKAP1 Missense_Mutation p.R324H 0.34 tolerated(0.34) benign(0.047) TCGA-CD-A4MG-01 9 129595386 129595386 T C ZBTB43 Missense_Mutation p.S200P 0.12 tolerated(0.32) probably_damaging(0.969) TCGA-CD-A4MG-01 9 129931002 129931002 G A RALGPS1 Missense_Mutation p.V265I 0.30 tolerated(0.21) benign(0.381) TCGA-CD-A4MG-01 9 130097540 130097540 T C GARNL3 Silent p.T267T 0.29 TCGA-CD-A4MG-01 9 130279403 130279403 C T FAM129B Silent p.R266R 0.11 TCGA-CD-A4MG-01 9 130502625 130502625 C T SH2D3C Nonsense_Mutation p.W704* 0.25 TCGA-CD-A4MG-01 9 130566958 130566958 G A FPGS Missense_Mutation p.G122D 0.13 deleterious(0.02) possibly_damaging(0.789) TCGA-CD-A4MG-01 9 130674628 130674628 G T ST6GALNAC4 Missense_Mutation p.P177H 0.11 probably_damaging(0.999) TCGA-CD-A4MG-01 9 130913932 130913932 C A LCN2 Missense_Mutation p.D97E 0.24 tolerated(0.37) benign(0.072) TCGA-CD-A4MG-01 9 131483604 131483604 G A ZDHHC12 Silent p.I220I 0.36 TCGA-CD-A4MG-01 9 132375722 132375722 G A C9orf50 Silent p.C345C 0.33 TCGA-CD-A4MG-01 9 132576385 132576385 C A TOR1A Missense_Mutation p.G289C 0.24 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 9 132636012 132636012 C T USP20 Missense_Mutation p.R577W 0.30 deleterious(0) possibly_damaging(0.766) TCGA-CD-A4MG-01 9 132988754 132988754 C T NCS1 Silent p.D187D 0.32 TCGA-CD-A4MG-01 9 134073008 134073008 C - NUP214 Frame_Shift_Del p.P1378Rfs*3 0.20 TCGA-CD-A4MG-01 9 135073834 135073834 A G NTNG2 Missense_Mutation p.N232S 0.06 tolerated(1) benign(0.053) TCGA-CD-A4MG-01 9 135140338 135140338 G A SETX Missense_Mutation p.A2441V 0.08 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MG-01 9 135203742 135203742 A - SETX Frame_Shift_Del p.F1081Lfs*34 0.11 TCGA-CD-A4MG-01 9 135278107 135278107 G A TTF1 Silent p.H34H 0.29 TCGA-CD-A4MG-01 9 135487486 135487486 G T DDX31 Missense_Mutation p.A766E 0.19 tolerated(0.29) benign(0.196) TCGA-CD-A4MG-01 9 135521418 135521418 C T DDX31 Missense_Mutation p.C520Y 0.25 deleterious(0.04) probably_damaging(0.961) TCGA-CD-A4MG-01 9 135522215 135522215 A C DDX31 Missense_Mutation p.C505G 0.26 deleterious(0.02) benign(0.039) TCGA-CD-A4MG-01 9 136339174 136339174 G A SLC2A6 Missense_Mutation p.R322W 0.23 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 9 136550366 136550366 G A SARDH Silent p.N704N 0.20 TCGA-CD-A4MG-01 9 138012118 138012118 C T OLFM1 3'UTR 0.27 TCGA-CD-A4MG-01 9 138710921 138710921 G A CAMSAP1 Silent p.A1298A 0.19 TCGA-CD-A4MG-01 9 139616653 139616653 G A FAM69B Missense_Mutation p.R128Q 0.24 tolerated(0.19) benign(0.044) TCGA-CD-A4MG-01 9 139903482 139903482 G A ABCA2 Missense_Mutation p.T2284M 0.16 deleterious(0.04) probably_damaging(0.988) TCGA-CD-A4MG-01 9 139912071 139912071 G A ABCA2 Missense_Mutation p.S762F 0.10 tolerated(0.08) probably_damaging(0.988) TCGA-CD-A4MG-01 9 140000573 140000573 G A MAN1B1 Intron 0.28 TCGA-CD-A4MG-01 9 140059732 140059732 G T GRIN1 Missense_Mutation p.R916M 0.24 deleterious_low_confidence(0) benign(0.046) TCGA-CD-A4MG-01 9 140477029 140477029 C T ZMYND19 Missense_Mutation p.R217H 0.29 tolerated(0.08) probably_damaging(0.994) TCGA-CD-A4MG-01 9 140508460 140508460 C - ARRDC1 Intron 0.15 TCGA-CD-A4MG-01 9 15423075 15423075 G A SNAPC3 Silent p.P66P 0.23 TCGA-CD-A4MG-01 9 16419430 16419430 T C BNC2 Missense_Mutation p.M953V 0.22 tolerated(0.3) benign(0.002) TCGA-CD-A4MG-01 9 16436043 16436043 C T BNC2 Missense_Mutation p.E717K 0.08 tolerated(0.15) benign(0.008) TCGA-CD-A4MG-01 9 19376283 19376283 A - RPS6 3'UTR 0.16 TCGA-CD-A4MG-01 9 21350820 21350820 C T IFNA6 Missense_Mutation p.D23N 0.10 deleterious(0) benign(0.002) TCGA-CD-A4MG-01 9 21971139 21971139 G T CDKN2A Silent p.A73A 0.10 TCGA-CD-A4MG-01 9 22823336 22823336 G A RP11-399D6.2 RNA 0.29 TCGA-CD-A4MG-01 9 2718054 2718054 C T KCNV2 Silent p.G105G 0.23 TCGA-CD-A4MG-01 9 33264393 33264393 G T BAG1 Missense_Mutation p.L94M 0.29 tolerated_low_confidence(0.05) benign(0.001) TCGA-CD-A4MG-01 9 33441871 33441871 G A AQP3 3'UTR 0.14 TCGA-CD-A4MG-01 9 33466935 33466935 T C NOL6 Missense_Mutation p.D642G 0.05 deleterious(0.03) benign(0.019) TCGA-CD-A4MG-01 9 34372003 34372003 G A KIAA1161 Silent p.F279F 0.09 TCGA-CD-A4MG-01 9 34400930 34400930 C T FAM219A 3'UTR 0.48 TCGA-CD-A4MG-01 9 34400994 34400994 C T FAM219A Missense_Mutation p.A176T 0.10 tolerated(0.08) probably_damaging(0.998) TCGA-CD-A4MG-01 9 35606933 35606933 C T TESK1 Missense_Mutation p.R164W 0.20 deleterious(0) probably_damaging(0.953) TCGA-CD-A4MG-01 9 35685730 35685730 C T TPM2 Silent p.E96E 0.18 TCGA-CD-A4MG-01 9 37516037 37516037 C T FBXO10 Missense_Mutation p.V854M 0.27 tolerated(0.28) benign(0.115) TCGA-CD-A4MG-01 9 38396386 38396386 C - ALDH1B1 Frame_Shift_Del p.L216Sfs*20 0.10 TCGA-CD-A4MG-01 9 39073899 39073899 T - CNTNAP3 Frame_Shift_Del p.E1286Kfs*27 0.26 TCGA-CD-A4MG-01 9 39361133 39361133 G T SPATA31A1 Missense_Mutation p.R1124M 0.22 tolerated(0.07) benign(0.018) TCGA-CD-A4MG-01 9 5077560 5077560 G A JAK2 Missense_Mutation p.A658T 0.38 deleterious(0) probably_damaging(0.926) TCGA-CD-A4MG-01 9 5339739 5339739 C T RLN1 Missense_Mutation p.R3H 0.29 tolerated(0.3) probably_damaging(0.98) TCGA-CD-A4MG-01 9 5743013 5743013 C T KIAA1432 Missense_Mutation p.A349V 0.29 tolerated(0.19) benign(0.004) TCGA-CD-A4MG-01 9 5801227 5801227 A - ERMP1 Frame_Shift_Del p.P673Hfs*19 0.15 TCGA-CD-A4MG-01 9 70993145 70993145 A G PGM5 Missense_Mutation p.I98V 0.13 deleterious(0.01) possibly_damaging(0.573) TCGA-CD-A4MG-01 9 712285 712285 G A KANK1 Missense_Mutation p.A507T 0.29 deleterious(0.01) benign(0.164) TCGA-CD-A4MG-01 9 71827467 71827467 C A TJP2 Missense_Mutation p.P53T 0.17 tolerated(0.08) benign(0.062) TCGA-CD-A4MG-01 9 72131216 72131216 G - APBA1 Frame_Shift_Del p.P304Lfs*57 0.32 TCGA-CD-A4MG-01 9 73253991 73253991 C A TRPM3 Missense_Mutation p.E522D 0.22 deleterious(0.02) probably_damaging(0.994) TCGA-CD-A4MG-01 9 77112896 77112896 C T RORB Nonsense_Mutation p.R2* 0.12 TCGA-CD-A4MG-01 9 77562953 77562953 G A C9orf40 3'UTR 0.07 TCGA-CD-A4MG-01 9 79853296 79853296 G A VPS13A Missense_Mutation p.A632T 0.24 tolerated(0.11) possibly_damaging(0.839) TCGA-CD-A4MG-01 9 80923424 80923424 G A PSAT1 Missense_Mutation p.R222Q 0.28 tolerated(0.08) benign(0.002) TCGA-CD-A4MG-01 9 8633359 8633359 C T PTPRD Missense_Mutation p.V104M 0.23 tolerated(0.07) probably_damaging(0.969) TCGA-CD-A4MG-01 9 86503402 86503402 A G KIF27 Splice_Site p.X695_splice 0.35 TCGA-CD-A4MG-01 9 87570335 87570335 A T NTRK2 Missense_Mutation p.D692V 0.26 deleterious(0.02) probably_damaging(0.999) TCGA-CD-A4MG-01 9 89561023 89561023 G A GAS1 Silent p.C224C 0.09 TCGA-CD-A4MG-01 9 89763793 89763793 G A C9orf170 Missense_Mutation p.G50S 0.09 tolerated_low_confidence(0.66) benign(0) TCGA-CD-A4MG-01 9 93636994 93636994 C T SYK Silent p.Y348Y 0.26 TCGA-CD-A4MG-01 9 94487188 94487188 G A ROR2 Missense_Mutation p.R530W 0.25 deleterious(0.04) benign(0.01) TCGA-CD-A4MG-01 9 94493292 94493292 C - ROR2 Frame_Shift_Del p.H362Tfs*83 0.09 TCGA-CD-A4MG-01 9 96051356 96051356 C T WNK2 Silent p.H1477H 0.28 TCGA-CD-A4MG-01 9 96051651 96051651 C - WNK2 Frame_Shift_Del p.R1578Gfs*48 0.08 TCGA-CD-A4MG-01 9 96422621 96422621 A G PHF2 Missense_Mutation p.T493A 0.20 tolerated(0.64) unknown(0) TCGA-CD-A4MG-01 9 96715034 96715034 G A BARX1 Missense_Mutation p.R193W 0.29 deleterious(0) probably_damaging(0.977) TCGA-CD-A4MG-01 9 97082708 97082708 T C NUTM2F Missense_Mutation p.T384A 0.25 tolerated(0.13) possibly_damaging(0.831) TCGA-CD-A4MG-01 9 97563164 97563164 C T C9orf3 Missense_Mutation p.T415I 0.26 tolerated(0.47) benign(0.002) TCGA-CD-A4MG-01 9 97934320 97934320 T - FANCC Frame_Shift_Del p.N152Ifs*6 0.21 TCGA-CD-A4MG-01 9 99150737 99150737 A G ZNF367 Missense_Mutation p.W279R 0.23 tolerated(0.11) probably_damaging(0.999) TCGA-CD-A4MG-01 9 99160514 99160514 C T ZNF367 Missense_Mutation p.R168H 0.25 deleterious(0) probably_damaging(0.988) TCGA-CD-A4MG-01 X 100667961 100667961 G A HNRNPH2 Missense_Mutation p.G329S 0.10 deleterious(0.04) probably_damaging(0.994) TCGA-CD-A4MG-01 X 10090659 10090659 C A WWC3 Missense_Mutation p.T544K 0.09 tolerated(0.53) benign(0.197) TCGA-CD-A4MG-01 X 100911457 100911457 C T ARMCX2 Missense_Mutation p.R373H 0.46 deleterious(0.01) possibly_damaging(0.701) TCGA-CD-A4MG-01 X 100912607 100912607 G A ARMCX2 5'UTR 0.16 TCGA-CD-A4MG-01 X 102864035 102864035 G A TCEAL3 Missense_Mutation p.E15K 0.73 tolerated(0.36) benign(0.31) TCGA-CD-A4MG-01 X 103359145 103359145 C T ZCCHC18 Missense_Mutation p.R115W 0.46 tolerated(0.07) benign(0.024) TCGA-CD-A4MG-01 X 106310632 106310632 T - RBM41 3'UTR 0.44 TCGA-CD-A4MG-01 X 106888571 106888571 C T PRPS1 Missense_Mutation p.A232V 0.64 deleterious(0.04) possibly_damaging(0.448) TCGA-CD-A4MG-01 X 107783022 107783022 T C COL4A5 Missense_Mutation p.I43T 0.36 unknown(0) TCGA-CD-A4MG-01 X 107834414 107834414 C T COL4A5 Missense_Mutation p.P431L 0.10 unknown(0) TCGA-CD-A4MG-01 X 107938146 107938146 A G COL4A5 Missense_Mutation p.M1606V 0.53 benign(0.213) TCGA-CD-A4MG-01 X 114524366 114524366 C T LUZP4 Missense_Mutation p.P14L 0.77 tolerated(0.34) benign(0) TCGA-CD-A4MG-01 X 119394878 119394878 G A TMEM255A Silent p.S299S 0.53 TCGA-CD-A4MG-01 X 123839039 123839039 T C TENM1 Missense_Mutation p.Y280C 0.26 deleterious_low_confidence(0) probably_damaging(1) TCGA-CD-A4MG-01 X 125298773 125298773 C T DCAF12L2 Missense_Mutation p.A379T 0.48 deleterious(0.02) possibly_damaging(0.691) TCGA-CD-A4MG-01 X 125299138 125299138 C T DCAF12L2 Missense_Mutation p.S257N 0.10 tolerated(0.36) benign(0.003) TCGA-CD-A4MG-01 X 129205114 129205114 C T ELF4 Missense_Mutation p.G237D 0.09 deleterious(0) probably_damaging(1) TCGA-CD-A4MG-01 X 130411032 130411032 C T IGSF1 Missense_Mutation p.S835N 0.13 tolerated(0.13) benign(0.018) TCGA-CD-A4MG-01 X 130411957 130411957 T G IGSF1 Missense_Mutation p.R736S 0.37 tolerated(0.43) benign(0.138) TCGA-CD-A4MG-01 X 133547614 133547614 A T PHF6 Missense_Mutation p.N171I 0.46 tolerated(0.31) benign(0.008) TCGA-CD-A4MG-01 X 134983781 134983781 A G SAGE1 Missense_Mutation p.R51G 0.09 tolerated(0.43) probably_damaging(0.978) TCGA-CD-A4MG-01 X 135080303 135080303 C T SLC9A6 Missense_Mutation p.L188F 0.48 deleterious(0) probably_damaging(0.951) TCGA-CD-A4MG-01 X 135313015 135313015 C T MAP7D3 Silent p.P508P 0.43 TCGA-CD-A4MG-01 X 135429585 135429585 C A GPR112 Missense_Mutation p.H1240Q 0.45 deleterious(0) benign(0.045) TCGA-CD-A4MG-01 X 135956319 135956320 - C RBMX Frame_Shift_Ins p.G387Rfs*29 0.15 TCGA-CD-A4MG-01 X 139006306 139006306 C T MIR505 3'Flank 0.50 TCGA-CD-A4MG-01 X 147744112 147744112 C T AFF2 Silent p.Y288Y 0.45 TCGA-CD-A4MG-01 X 14927024 14927024 T A MOSPD2 Missense_Mutation p.V207E 0.28 deleterious(0.01) possibly_damaging(0.529) TCGA-CD-A4MG-01 X 151283859 151283859 C - RP11-1007I13.4 RNA 0.39 TCGA-CD-A4MG-01 X 151821168 151821168 G T GABRQ Missense_Mutation p.Q441H 0.58 tolerated(0.33) probably_damaging(0.911) TCGA-CD-A4MG-01 X 152159091 152159092 - C PNMA5 Frame_Shift_Ins p.A351Gfs*4 0.32 TCGA-CD-A4MG-01 X 152821867 152821867 C T ATP2B3 Silent p.L773L 0.64 TCGA-CD-A4MG-01 X 152825264 152825264 G A ATP2B3 Silent p.T901T 0.57 TCGA-CD-A4MG-01 X 153063257 153063257 C G SSR4 Missense_Mutation p.S113R 0.57 deleterious(0.01) probably_damaging(0.996) TCGA-CD-A4MG-01 X 153221775 153221775 G A HCFC1 Missense_Mutation p.T908M 0.10 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-CD-A4MG-01 X 153228738 153228738 T C HCFC1 Missense_Mutation p.K217R 0.09 tolerated(0.95) probably_damaging(0.991) TCGA-CD-A4MG-01 X 153295696 153295696 A - MECP2 3'UTR 0.77 TCGA-CD-A4MG-01 X 153295823 153295823 T G MECP2 Missense_Mutation p.S498R 0.73 deleterious(0) unknown(0) TCGA-CD-A4MG-01 X 153589691 153589691 G - FLNA Frame_Shift_Del p.T1065Pfs*6 0.28 TCGA-CD-A4MG-01 X 153592413 153592413 T C FLNA Missense_Mutation p.S753G 0.27 tolerated(0.08) benign(0.016) TCGA-CD-A4MG-01 X 153596065 153596065 C T FLNA Missense_Mutation p.V222I 0.55 deleterious(0) possibly_damaging(0.728) TCGA-CD-A4MG-01 X 153628649 153628649 C A RPL10 Intron 0.17 TCGA-CD-A4MG-01 X 16847845 16847845 G - TXLNG Frame_Shift_Del p.E274Rfs*3 0.40 TCGA-CD-A4MG-01 X 16876853 16876853 T - RBBP7 Frame_Shift_Del p.T187Hfs*30 0.40 TCGA-CD-A4MG-01 X 1712781 1712781 G - AKAP17A Frame_Shift_Del p.E144Sfs*18 0.25 TCGA-CD-A4MG-01 X 1720111 1720111 A G AKAP17A Missense_Mutation p.D571G 0.07 tolerated_low_confidence(0.12) unknown(0) TCGA-CD-A4MG-01 X 21675046 21675046 C - KLHL34 Frame_Shift_Del p.R288Afs*7 0.32 TCGA-CD-A4MG-01 X 22291685 22291685 G - ZNF645 Frame_Shift_Del p.V193Cfs*25 0.37 TCGA-CD-A4MG-01 X 2406791 2406791 G A ZBED1 Missense_Mutation p.A657V 0.32 deleterious_low_confidence(0.04) benign(0.165) TCGA-CD-A4MG-01 X 26212500 26212500 C T MAGEB6 Silent p.S179S 0.49 TCGA-CD-A4MG-01 X 27998107 27998107 G A DCAF8L1 Missense_Mutation p.R449W 0.56 deleterious(0) probably_damaging(0.947) TCGA-CD-A4MG-01 X 29973751 29973751 C T IL1RAPL1 Silent p.T635T 0.58 TCGA-CD-A4MG-01 X 3592741 3592741 T - PRKX Frame_Shift_Del p.K78Rfs*2 0.15 TCGA-CD-A4MG-01 X 41554898 41554898 T C GPR34 Silent p.H4H 0.69 TCGA-CD-A4MG-01 X 41586414 41586415 - A GPR82 Frame_Shift_Ins p.T48Nfs*88 0.18 TCGA-CD-A4MG-01 X 41586527 41586530 ATCA - GPR82 Frame_Shift_Del p.Q84Lfs*24 0.62 TCGA-CD-A4MG-01 X 46521972 46521972 C T SLC9A7 Splice_Site p.X300_splice 0.47 TCGA-CD-A4MG-01 X 47062550 47062550 C T UBA1 Silent p.D452D 0.14 TCGA-CD-A4MG-01 X 47426415 47426415 C - ARAF Frame_Shift_Del p.R255Gfs*37 0.39 TCGA-CD-A4MG-01 X 47426715 47426715 G A ARAF Silent p.S320S 0.67 TCGA-CD-A4MG-01 X 48123236 48123236 C T SSX1 Missense_Mutation p.A117V 0.59 deleterious(0.04) benign(0.421) TCGA-CD-A4MG-01 X 48823397 48823397 C T KCND1 Missense_Mutation p.R413H 0.08 deleterious(0.02) benign(0.393) TCGA-CD-A4MG-01 X 48979945 48979945 G T GPKOW Missense_Mutation p.P43Q 0.27 tolerated(0.15) possibly_damaging(0.516) TCGA-CD-A4MG-01 X 51639617 51639617 G A MAGED1 Missense_Mutation p.G345D 0.59 deleterious_low_confidence(0) unknown(0) TCGA-CD-A4MG-01 X 53280145 53280145 G - IQSEC2 Frame_Shift_Del p.P538Hfs*69 0.34 TCGA-CD-A4MG-01 X 53575080 53575080 T C HUWE1 Missense_Mutation p.N3397S 0.21 benign(0.292) TCGA-CD-A4MG-01 X 54957418 54957418 G A TRO Missense_Mutation p.A1421T 0.54 tolerated_low_confidence(1) benign(0.033) TCGA-CD-A4MG-01 X 55028042 55028042 G A APEX2 Missense_Mutation p.R74H 0.38 deleterious(0) probably_damaging(0.982) TCGA-CD-A4MG-01 X 57935808 57935808 C T ZXDA Silent p.A349A 0.14 TCGA-CD-A4MG-01 X 65412069 65412069 T C HEPH Silent p.H441H 0.12 TCGA-CD-A4MG-01 X 68382235 68382235 T C PJA1 Missense_Mutation p.M283V 0.33 tolerated(1) benign(0.001) TCGA-CD-A4MG-01 X 68725856 68725856 G A FAM155B Missense_Mutation p.S244N 0.60 tolerated(0.14) benign(0.001) TCGA-CD-A4MG-01 X 71359622 71359622 G A NHSL2 Missense_Mutation p.V742I 0.15 tolerated(0.26) benign(0.089) TCGA-CD-A4MG-01 X 71360412 71360413 - A NHSL2 Frame_Shift_Ins p.P1008Tfs*44 0.55 TCGA-CD-A4MG-01 X 73046080 73046080 T - XIST RNA 0.53 TCGA-CD-A4MG-01 X 76938181 76938181 C T ATRX Missense_Mutation p.S856N 0.09 benign(0.001) TCGA-CD-A4MG-01 X 78216846 78216846 T C P2RY10 Missense_Mutation p.C277R 0.45 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MG-01 X 79698606 79698606 A - FAM46D Frame_Shift_Del p.N191Mfs*4 0.35 TCGA-CD-A4MG-01 X 85213976 85213976 A G CHM Missense_Mutation p.Y237H 0.17 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MG-01 X 91134309 91134309 T - PCDH11X Intron 0.25 TCGA-CD-A4MG-01 X 9679787 9679787 G A TBL1X Missense_Mutation p.D526N 0.59 deleterious(0) probably_damaging(0.958) TCGA-CD-A4MG-01 Y 14837085 14837085 G A USP9Y Missense_Mutation p.R122Q 0.23 tolerated(0.14) probably_damaging(0.946) TCGA-CD-A4MG-01 Y 16952313 16952313 C T NLGN4Y Missense_Mutation p.P541L 0.20 deleterious(0.01) possibly_damaging(0.788) TCGA-CD-A4MG-01 Y 2655595 2655595 T C SRY Missense_Mutation p.Y17C 0.29 tolerated(0.14) benign(0.007) TCGA-CD-A4MH-01 10 135087518 135087518 G A ADAM8 Silent p.S81S 0.24 TCGA-CD-A4MH-01 10 15879259 15879259 T C FAM188A Missense_Mutation p.M174V 0.17 tolerated(0.97) benign(0.002) TCGA-CD-A4MH-01 10 17276730 17276730 C T VIM Silent p.D307D 0.08 TCGA-CD-A4MH-01 10 18840880 18840880 C T NSUN6 Missense_Mutation p.E315K 0.13 deleterious(0.02) benign(0.158) TCGA-CD-A4MH-01 10 75186022 75186022 G T MSS51 Missense_Mutation p.L206I 0.19 tolerated(0.1) benign(0.053) TCGA-CD-A4MH-01 11 126277130 126277130 C G ST3GAL4 Intron 0.12 TCGA-CD-A4MH-01 11 5364062 5364062 C T OR51B5 Silent p.E231E 0.11 TCGA-CD-A4MH-01 11 62519821 62519821 C T ZBTB3 Missense_Mutation p.R489Q 0.21 deleterious(0) probably_damaging(1) TCGA-CD-A4MH-01 11 68153890 68153890 C T LRP5 Silent p.H374H 0.13 TCGA-CD-A4MH-01 11 72946437 72946437 G A P2RY2 3'UTR 0.16 TCGA-CD-A4MH-01 11 9069049 9069049 C T SCUBE2 Missense_Mutation p.R619H 0.10 deleterious(0.05) probably_damaging(0.944) TCGA-CD-A4MH-01 11 9069067 9069067 C A SCUBE2 Missense_Mutation p.R613L 0.10 deleterious(0.01) possibly_damaging(0.483) TCGA-CD-A4MH-01 12 80214567 80214567 T A PPP1R12A Silent p.S367S 0.23 TCGA-CD-A4MH-01 13 111315858 111315858 C T CARS2 Silent p.L309L 0.11 TCGA-CD-A4MH-01 13 49884834 49884834 C T CAB39L 3'UTR 0.31 TCGA-CD-A4MH-01 13 88327806 88327808 GAG AA SLITRK5 Frame_Shift_Del p.E55Kfs*7 0.11 TCGA-CD-A4MH-01 14 24607984 24607984 C T PSME1 3'UTR 0.21 TCGA-CD-A4MH-01 14 24798738 24798738 G A ADCY4 Nonsense_Mutation p.R407* 0.21 TCGA-CD-A4MH-01 15 25422005 25422005 T C SNORD115-4 RNA 0.06 TCGA-CD-A4MH-01 15 91312405 91312406 TA - BLM Frame_Shift_Del p.Y784* 0.15 TCGA-CD-A4MH-01 16 2817757 2817757 C T SRRM2 Missense_Mutation p.P2410S 0.24 probably_damaging(0.998) TCGA-CD-A4MH-01 16 31476013 31476013 G A ARMC5 Missense_Mutation p.G557S 0.57 tolerated(0.57) possibly_damaging(0.726) TCGA-CD-A4MH-01 16 3299631 3299631 G A MEFV Missense_Mutation p.R354W 0.70 deleterious(0.01) benign(0.02) TCGA-CD-A4MH-01 16 88688687 88688687 C T ZC3H18 Missense_Mutation p.R520C 0.21 tolerated_low_confidence(0.06) unknown(0) TCGA-CD-A4MH-01 17 17106107 17106107 C T PLD6 Missense_Mutation p.G245S 0.57 tolerated_low_confidence(0.59) benign(0.008) TCGA-CD-A4MH-01 17 18631020 18631020 G A TRIM16L Silent p.K50K 0.50 TCGA-CD-A4MH-01 17 25904525 25904525 C T KSR1 5'UTR 0.22 TCGA-CD-A4MH-01 17 37618304 37618304 C T CDK12 5'UTR 0.24 TCGA-CD-A4MH-01 17 3854675 3854675 G A ATP2A3 Silent p.N111N 0.29 TCGA-CD-A4MH-01 17 38652509 38652509 C T TNS4 Missense_Mutation p.V57M 0.24 tolerated(0.31) benign(0) TCGA-CD-A4MH-01 17 48674155 48674155 G A CACNA1G Silent p.T1043T 0.13 TCGA-CD-A4MH-01 17 63156397 63156397 C T RGS9 Silent p.Y84Y 0.18 TCGA-CD-A4MH-01 17 67273963 67273963 G A ABCA5 Nonsense_Mutation p.Q805* 0.21 TCGA-CD-A4MH-01 17 7574012 7574012 C - TP53 Frame_Shift_Del p.E339Rfs*6 0.30 TCGA-CD-A4MH-01 17 78163619 78163619 G A CARD14 Missense_Mutation p.R304H 0.37 tolerated(0.09) benign(0.363) TCGA-CD-A4MH-01 18 24436277 24436277 A G AQP4 Silent p.D290D 0.20 TCGA-CD-A4MH-01 19 18576690 18576690 C T ELL Silent p.A74A 0.33 TCGA-CD-A4MH-01 19 18963058 18963058 C G UPF1 Missense_Mutation p.L309V 0.26 deleterious(0) probably_damaging(0.958) TCGA-CD-A4MH-01 19 40540586 40540586 C T ZNF780B Missense_Mutation p.C727Y 0.48 deleterious(0.02) probably_damaging(0.99) TCGA-CD-A4MH-01 19 47984033 47984033 T C KPTN Missense_Mutation p.T195A 0.55 tolerated(0.77) benign(0.084) TCGA-CD-A4MH-01 19 49657413 49657413 C T HRC Missense_Mutation p.R361H 0.17 tolerated(1) benign(0) TCGA-CD-A4MH-01 19 56895714 56895714 G A ZNF582 Nonsense_Mutation p.Q358* 0.20 TCGA-CD-A4MH-01 19 7916351 7916351 G A EVI5L Missense_Mutation p.R262H 0.49 deleterious(0.01) probably_damaging(0.999) TCGA-CD-A4MH-01 1 104297162 104297162 C T AMY1C Missense_Mutation p.A307V 0.09 tolerated(0.09) benign(0.158) TCGA-CD-A4MH-01 1 118584644 118584644 G A SPAG17 Nonsense_Mutation p.R946* 0.33 TCGA-CD-A4MH-01 1 204197879 204197879 G A PLEKHA6 Silent p.I954I 0.08 TCGA-CD-A4MH-01 1 205210967 205210967 G A TMCC2 Missense_Mutation p.R181Q 0.18 deleterious_low_confidence(0) benign(0.06) TCGA-CD-A4MH-01 1 232941162 232941162 G A MAP10 Silent p.A131A 0.32 TCGA-CD-A4MH-01 1 24997907 24997909 AAG - SRRM1 In_Frame_Del p.K815del 0.14 TCGA-CD-A4MH-01 1 64089203 64089203 T - PGM1 Frame_Shift_Del p.F25Lfs*41 0.14 TCGA-CD-A4MH-01 20 5294595 5294595 C T PROKR2 Missense_Mutation p.V141I 0.22 deleterious(0.01) probably_damaging(0.991) TCGA-CD-A4MH-01 21 32253278 32253278 A G KRTAP11-1 3'UTR 0.15 TCGA-CD-A4MH-01 22 41573763 41573763 G A EP300 Missense_Mutation p.M2016I 0.14 possibly_damaging(0.708) TCGA-CD-A4MH-01 2 107446537 107446537 A G ST6GAL2 Missense_Mutation p.S435P 0.08 probably_damaging(0.999) TCGA-CD-A4MH-01 2 149847638 149847638 G A KIF5C Missense_Mutation p.A611T 0.40 tolerated(0.59) benign(0.001) TCGA-CD-A4MH-01 2 173855568 173855568 G A RAPGEF4 Missense_Mutation p.E469K 0.44 deleterious(0) probably_damaging(0.993) TCGA-CD-A4MH-01 2 215891623 215891623 A G ABCA12 Silent p.N367N 0.51 TCGA-CD-A4MH-01 2 50779727 50779727 G T NRXN1 Nonsense_Mutation p.S626* 0.09 TCGA-CD-A4MH-01 3 123471320 123471320 G T MYLK Silent p.G77G 0.33 TCGA-CD-A4MH-01 3 124210189 124210189 C T KALRN Missense_Mutation p.T1534I 0.15 deleterious(0) possibly_damaging(0.541) TCGA-CD-A4MH-01 3 128973560 128973560 G A COPG1 Missense_Mutation p.V125M 0.19 deleterious(0) benign(0.364) TCGA-CD-A4MH-01 3 172365747 172365747 G A NCEH1 Missense_Mutation p.P131L 0.57 tolerated(0.09) benign(0.004) TCGA-CD-A4MH-01 3 53752408 53752408 A T CACNA1D Missense_Mutation p.S491C 0.19 deleterious(0.01) possibly_damaging(0.605) TCGA-CD-A4MH-01 4 155163809 155163809 C A DCHS2 Missense_Mutation p.V1898L 0.37 deleterious(0.01) possibly_damaging(0.795) TCGA-CD-A4MH-01 4 1843232 1843232 C G LETM1 Missense_Mutation p.E146Q 0.33 tolerated(0.32) benign(0.01) TCGA-CD-A4MH-01 4 2701681 2701681 A G FAM193A Missense_Mutation p.N970S 0.60 tolerated(0.17) probably_damaging(0.979) TCGA-CD-A4MH-01 4 40753002 40753002 C T NSUN7 Silent p.L98L 0.25 TCGA-CD-A4MH-01 5 140554232 140554232 C T PCDHB7 Silent p.L606L 0.17 TCGA-CD-A4MH-01 5 140588662 140588662 G A PCDHB12 Silent p.S61S 0.50 TCGA-CD-A4MH-01 5 14406052 14406052 C G TRIO Silent p.P1604P 0.57 TCGA-CD-A4MH-01 5 158750330 158750330 G C IL12B Silent p.V32V 0.27 TCGA-CD-A4MH-01 5 19747086 19747086 G T CDH18 Missense_Mutation p.P163Q 0.13 deleterious(0.03) probably_damaging(0.994) TCGA-CD-A4MH-01 5 32397359 32397359 T C ZFR Missense_Mutation p.H600R 0.12 deleterious(0) unknown(0) TCGA-CD-A4MH-01 6 118786548 118786548 G T CEP85L 3'UTR 0.11 TCGA-CD-A4MH-01 6 144837465 144837465 T A UTRN Missense_Mutation p.I1782K 0.15 deleterious(0) benign(0.302) TCGA-CD-A4MH-01 6 158735187 158735187 G A TULP4 Missense_Mutation p.A47T 0.21 deleterious(0) probably_damaging(0.995) TCGA-CD-A4MH-01 6 25969609 25969609 G A TRIM38 Silent p.E156E 0.39 TCGA-CD-A4MH-01 6 28967286 28967286 A T ZNF311 Missense_Mutation p.N96K 0.24 deleterious(0) probably_damaging(0.998) TCGA-CD-A4MH-01 6 30691661 30691661 C T TUBB Silent p.T274T 0.41 TCGA-CD-A4MH-01 6 74228776 74228776 T C EEF1A1 Missense_Mutation p.Y167C 0.11 deleterious_low_confidence(0.02) probably_damaging(0.976) TCGA-CD-A4MH-01 6 91257851 91257851 T G MAP3K7 Missense_Mutation p.D332A 0.08 tolerated(0.06) benign(0.044) TCGA-CD-A4MH-01 7 100198354 100198354 G T FBXO24 Missense_Mutation p.Q563H 0.17 deleterious_low_confidence(0) benign(0.216) TCGA-CD-A4MH-01 7 1028295 1028295 G A CYP2W1 Missense_Mutation p.R437H 0.34 tolerated(0.05) benign(0.007) TCGA-CD-A4MH-01 7 107408041 107408041 G A SLC26A3 Missense_Mutation p.R752C 0.14 deleterious_low_confidence(0.03) benign(0.04) TCGA-CD-A4MH-01 7 107558368 107558368 G - DLD Splice_Site p.X413_splice 0.24 TCGA-CD-A4MH-01 7 44153426 44153426 C A AEBP1 Missense_Mutation p.Q1015K 0.14 deleterious(0.05) benign(0.042) TCGA-CD-A4MH-01 7 47944049 47944049 A T PKD1L1 Missense_Mutation p.D619E 0.17 deleterious(0.03) probably_damaging(0.914) TCGA-CD-A4MH-01 7 48452060 48452060 C T ABCA13 Silent p.T4113T 0.19 TCGA-CD-A4MH-01 7 5521541 5521541 C T FBXL18 Silent p.A674A 0.21 TCGA-CD-A4MH-01 7 81579730 81579730 C T CACNA2D1 Missense_Mutation p.G1085D 0.11 tolerated_low_confidence(0.15) benign(0.129) TCGA-CD-A4MH-01 7 891106 891106 C T SUN1 Silent p.A248A 0.23 TCGA-CD-A4MH-01 8 144696589 144696589 C T TSTA3 Missense_Mutation p.A167T 0.15 tolerated(0.11) benign(0.014) TCGA-CD-A4MH-01 8 20110844 20110844 C T LZTS1 Missense_Mutation p.V200M 0.44 tolerated(0.4) benign(0.03) TCGA-CD-A4MH-01 9 123945660 123945660 C G RAB14 Missense_Mutation p.G123A 0.15 deleterious(0.01) probably_damaging(0.985) TCGA-CD-A4MH-01 9 130566591 130566591 C T FPGS Nonsense_Mutation p.Q56* 0.24 TCGA-CD-A4MH-01 9 15185355 15185355 C T TTC39B Missense_Mutation p.E513K 0.15 deleterious(0) probably_damaging(1) TCGA-CD-A4MH-01 X 101624641 101624641 G A NXF2B Nonsense_Mutation p.R84* 0.14 TCGA-CD-A4MH-01 X 109697186 109697186 C T RGAG1 Missense_Mutation p.A1114V 0.17 tolerated(0.07) benign(0.187) TCGA-CD-A4MH-01 X 11778528 11778528 T C MSL3 Silent p.D64D 0.28 TCGA-CD-A4MH-01 X 152937033 152937033 C T PNCK Missense_Mutation p.G253D 0.35 tolerated(0.11) possibly_damaging(0.545) TCGA-CD-A4MH-01 X 154002902 154002902 A C DKC1 Missense_Mutation p.K394T 0.13 tolerated(0.16) benign(0.066) TCGA-CD-A4MH-01 X 34149084 34149084 G A FAM47A Silent p.L438L 0.41 TCGA-CD-A4MH-01 X 55650539 55650539 C A FOXR2 Missense_Mutation p.P132Q 0.40 tolerated(0.1) benign(0.06) TCGA-CD-A4MH-01 X 72433489 72433489 G A NAP1L2 Silent p.G280G 0.47 TCGA-CD-A4MH-01 X 73069940 73069940 C T XIST RNA 0.17 TCGA-CD-A4MI-01 10 101715833 101715833 G T DNMBP Silent p.S466S 0.08 TCGA-CD-A4MI-01 10 101716831 101716831 G T DNMBP Missense_Mutation p.H134N 0.14 tolerated(0.13) benign(0.013) TCGA-CD-A4MI-01 10 106865237 106865237 T C SORCS3 Silent p.S392S 0.15 TCGA-CD-A4MI-01 10 115885658 115885658 T - C10orf118 Frame_Shift_Del p.N867Ifs*4 0.11 TCGA-CD-A4MI-01 10 116247739 116247739 G A ABLIM1 Missense_Mutation p.T340M 0.17 deleterious(0.03) benign(0.213) TCGA-CD-A4MI-01 10 11990443 11990443 T A UPF2 Missense_Mutation p.E1033D 0.07 tolerated(0.62) benign(0.001) TCGA-CD-A4MI-01 10 12071203 12071204 - AG UPF2 Frame_Shift_Ins p.F229Sfs*35 0.15 TCGA-CD-A4MI-01 10 123325059 123325059 T G FGFR2 Missense_Mutation p.E90A 0.10 tolerated(0.39) probably_damaging(0.996) TCGA-CD-A4MI-01 10 127462527 127462527 G A MMP21 Silent p.S190S 0.24 TCGA-CD-A4MI-01 10 131757223 131757223 G A EBF3 Silent p.L154L 0.11 TCGA-CD-A4MI-01 10 133753565 133753565 T C PPP2R2D Missense_Mutation p.Y46H 0.14 deleterious(0.02) possibly_damaging(0.754) TCGA-CD-A4MI-01 10 134563059 134563059 C T INPP5A Silent p.A257A 0.10 TCGA-CD-A4MI-01 10 135084567 135084567 G A ADAM8 Missense_Mutation p.P461L 0.08 deleterious(0.05) benign(0.347) TCGA-CD-A4MI-01 10 16967360 16967360 A - CUBN Frame_Shift_Del p.C2176Vfs*40 0.18 TCGA-CD-A4MI-01 10 22676794 22676794 G A SPAG6 Missense_Mutation p.V241M 0.15 tolerated(0.05) benign(0.277) TCGA-CD-A4MI-01 10 24832910 24832910 A - KIAA1217 Frame_Shift_Del p.K1572Sfs*32 0.10 TCGA-CD-A4MI-01 10 26800783 26800783 T C APBB1IP Silent p.C213C 0.14 TCGA-CD-A4MI-01 10 28024160 28024160 T C MKX Silent p.S164S 0.12 TCGA-CD-A4MI-01 10 29839919 29839919 G T SVIL Missense_Mutation p.A145D 0.09 tolerated(0.19) benign(0.197) TCGA-CD-A4MI-01 10 433709 433709 G A DIP2C Silent p.V546V 0.14 TCGA-CD-A4MI-01 10 43662530 43662530 C A CSGALNACT2 Missense_Mutation p.P413H 0.13 deleterious(0.02) possibly_damaging(0.746) TCGA-CD-A4MI-01 10 48390535 48390536 - A RBP3 Frame_Shift_Ins p.A115Cfs*10 0.09 TCGA-CD-A4MI-01 10 48413645 48413645 T C GDF2 Missense_Mutation p.D408G 0.08 deleterious(0.01) probably_damaging(0.923) TCGA-CD-A4MI-01 10 49448448 49448448 C T FRMPD2 Missense_Mutation p.E219K 0.20 tolerated(0.08) benign(0.282) TCGA-CD-A4MI-01 10 50530925 50530926 - C C10orf71 Frame_Shift_Ins p.K114Qfs*25 0.09 TCGA-CD-A4MI-01 10 5488655 5488655 C T NET1 Intron 0.18 TCGA-CD-A4MI-01 10 60272971 60272971 G A BICC1 Missense_Mutation p.S23N 0.08 deleterious_low_confidence(0.03) benign(0.118) TCGA-CD-A4MI-01 10 63212538 63212538 G T TMEM26 Intron 0.14 TCGA-CD-A4MI-01 10 68686244 68686244 G T LRRTM3 5'UTR 0.13 TCGA-CD-A4MI-01 10 70719567 70719568 - A DDX21 Frame_Shift_Ins p.E34Rfs*6 0.17 TCGA-CD-A4MI-01 10 7290596 7290596 G T SFMBT2 Silent p.R296R 0.14 TCGA-CD-A4MI-01 10 79769344 79769344 C A POLR3A Missense_Mutation p.K620N 0.11 deleterious(0.02) benign(0.236) TCGA-CD-A4MI-01 10 79769644 79769644 A C POLR3A Missense_Mutation p.L583R 0.13 deleterious(0) probably_damaging(0.926) TCGA-CD-A4MI-01 10 81927003 81927003 G A ANXA11 Missense_Mutation p.R210W 0.11 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MI-01 10 84498345 84498345 C T NRG3 Silent p.G322G 0.19 TCGA-CD-A4MI-01 10 86001138 86001138 G A LRIT1 Missense_Mutation p.R20W 0.19 tolerated(0.2) benign(0.002) TCGA-CD-A4MI-01 10 87615817 87615817 C T GRID1 Missense_Mutation p.G361D 0.17 deleterious(0.01) probably_damaging(1) TCGA-CD-A4MI-01 10 88259918 88259918 A - WAPAL Frame_Shift_Del p.L361Yfs*111 0.17 TCGA-CD-A4MI-01 10 88912390 88912390 A - FAM35A Frame_Shift_Del p.T429Hfs*3 0.15 TCGA-CD-A4MI-01 10 890939 890939 T - LARP4B Frame_Shift_Del p.T163Hfs*47 0.13 TCGA-CD-A4MI-01 10 90708624 90708624 C T ACTA2 Missense_Mutation p.G22S 0.11 deleterious_low_confidence(0.03) benign(0.443) TCGA-CD-A4MI-01 10 91092268 91092268 G T IFIT3 Intron 0.17 TCGA-CD-A4MI-01 10 91163033 91163033 A - IFIT1 Frame_Shift_Del p.K336Sfs*9 0.13 TCGA-CD-A4MI-01 10 92502258 92502258 T - HTR7 Frame_Shift_Del p.K474Rfs*3 0.10 TCGA-CD-A4MI-01 10 93590876 93590876 C T TNKS2 Missense_Mutation p.H405Y 0.13 deleterious(0) probably_damaging(0.979) TCGA-CD-A4MI-01 10 95791856 95791856 G A PLCE1 Silent p.L351L 0.14 TCGA-CD-A4MI-01 10 96094000 96094000 G T NOC3L Nonsense_Mutation p.Y779* 0.13 TCGA-CD-A4MI-01 10 97951722 97951722 T C BLNK 3'UTR 0.13 TCGA-CD-A4MI-01 10 98115041 98115041 A - OPALIN Frame_Shift_Del p.S4Hfs*2 0.08 TCGA-CD-A4MI-01 10 99344577 99344577 C - PI4K2A Frame_Shift_Del p.P41Lfs*2 0.14 TCGA-CD-A4MI-01 11 1018569 1018569 G T MUC6 Missense_Mutation p.T1411K 0.10 unknown(0) TCGA-CD-A4MI-01 11 104825505 104825505 A - CASP4 Frame_Shift_Del p.F77Lfs*3 0.13 TCGA-CD-A4MI-01 11 10517233 10517233 G A AMPD3 Silent p.K470K 0.16 TCGA-CD-A4MI-01 11 108155113 108155113 T C ATM Silent p.G1302G 0.11 TCGA-CD-A4MI-01 11 1085752 1085752 C T MUC2 Silent p.C891C 0.09 TCGA-CD-A4MI-01 11 108709179 108709179 G T DDX10 Nonsense_Mutation p.E658* 0.10 TCGA-CD-A4MI-01 11 112071463 112071463 G A BCO2 Silent p.T331T 0.08 TCGA-CD-A4MI-01 11 117152313 117152313 T A RNF214 Intron 0.12 TCGA-CD-A4MI-01 11 117375668 117375668 G - DSCAML1 Frame_Shift_Del p.P778Hfs*36 0.12 TCGA-CD-A4MI-01 11 118272414 118272414 A G ATP5L Missense_Mutation p.T12A 0.17 tolerated(1) benign(0.001) TCGA-CD-A4MI-01 11 118343133 118343133 G A KMT2A Missense_Mutation p.R420Q 0.14 probably_damaging(0.945) TCGA-CD-A4MI-01 11 119025561 119025561 C T ABCG4 Missense_Mutation p.R208C 0.17 deleterious(0) probably_damaging(1) TCGA-CD-A4MI-01 11 119052945 119052945 C A NLRX1 Missense_Mutation p.R833S 0.12 tolerated(0.33) benign(0.003) TCGA-CD-A4MI-01 11 119290951 119290951 G A THY1 Silent p.H61H 0.11 TCGA-CD-A4MI-01 11 120930727 120930727 C T TBCEL Nonsense_Mutation p.R297* 0.20 TCGA-CD-A4MI-01 11 121986656 121986656 T C BLID 5'UTR 0.15 TCGA-CD-A4MI-01 11 123513213 123513213 T C SCN3B Missense_Mutation p.E129G 0.14 tolerated(0.23) benign(0.004) TCGA-CD-A4MI-01 11 124266650 124266650 G A OR8B3 Missense_Mutation p.L200F 0.10 tolerated_low_confidence(1) probably_damaging(0.992) TCGA-CD-A4MI-01 11 125324074 125324074 C T FEZ1 Silent p.L324L 0.20 TCGA-CD-A4MI-01 11 128840449 128840449 G T ARHGAP32 Silent p.A1539A 0.06 TCGA-CD-A4MI-01 11 129062071 129062071 C T ARHGAP32 Missense_Mutation p.S8N 0.11 deleterious_low_confidence(0) benign(0.087) TCGA-CD-A4MI-01 11 130281444 130281444 G A ADAMTS8 Missense_Mutation p.R540W 0.14 deleterious(0) probably_damaging(1) TCGA-CD-A4MI-01 11 134153716 134153716 A G GLB1L3 Missense_Mutation p.I205V 0.16 tolerated(0.11) benign(0.158) TCGA-CD-A4MI-01 11 18765665 18765665 G - PTPN5 Frame_Shift_Del p.P60Lfs*65 0.16 TCGA-CD-A4MI-01 11 19954794 19954794 G A NAV2 Missense_Mutation p.S358N 0.12 tolerated(0.23) benign(0.001) TCGA-CD-A4MI-01 11 2170546 2170546 A G INS-IGF2 Missense_Mutation p.S73P 0.11 tolerated_low_confidence(0.2) possibly_damaging(0.82) TCGA-CD-A4MI-01 11 22398954 22398954 C T SLC17A6 Missense_Mutation p.R473C 0.10 deleterious(0.01) possibly_damaging(0.772) TCGA-CD-A4MI-01 11 22848803 22848803 T - SVIP Frame_Shift_Del p.I57* 0.10 TCGA-CD-A4MI-01 11 252595 252595 A G PSMD13 Missense_Mutation p.T378A 0.11 deleterious(0.03) possibly_damaging(0.747) TCGA-CD-A4MI-01 11 26620415 26620415 G A ANO3 Missense_Mutation p.R514H 0.09 deleterious(0) probably_damaging(0.997) TCGA-CD-A4MI-01 11 26677939 26677939 G T ANO3 Missense_Mutation p.G892C 0.20 tolerated(0.17) probably_damaging(0.928) TCGA-CD-A4MI-01 11 3022438 3022438 T C CARS Missense_Mutation p.K801R 0.10 tolerated(0.06) benign(0.12) TCGA-CD-A4MI-01 11 314946 314946 G A IFITM1 Missense_Mutation p.D71N 0.07 deleterious(0.04) benign(0) TCGA-CD-A4MI-01 11 34668230 34668230 C T EHF Silent p.N136N 0.10 TCGA-CD-A4MI-01 11 34680408 34680408 G A EHF Missense_Mutation p.R300H 0.14 tolerated(0.05) probably_damaging(0.999) TCGA-CD-A4MI-01 11 35457486 35457486 C A PAMR1 Missense_Mutation p.G450V 0.12 deleterious(0) probably_damaging(0.982) TCGA-CD-A4MI-01 11 44081472 44081472 C T ACCSL 3'UTR 0.15 TCGA-CD-A4MI-01 11 4621712 4621712 C A TRIM68 Missense_Mutation p.V418F 0.07 deleterious(0) possibly_damaging(0.623) TCGA-CD-A4MI-01 11 46400607 46400607 C T DGKZ Missense_Mutation p.H1017Y 0.20 deleterious(0) probably_damaging(1) TCGA-CD-A4MI-01 11 46529844 46529844 T C AMBRA1 Missense_Mutation p.M656V 0.19 deleterious_low_confidence(0.01) benign(0.091) TCGA-CD-A4MI-01 11 47307995 47307995 C T MADD Missense_Mutation p.R855W 0.12 deleterious_low_confidence(0) probably_damaging(0.92) TCGA-CD-A4MI-01 11 49597897 49597897 G A RP11-707M1.1 RNA 0.13 TCGA-CD-A4MI-01 11 51515609 51515609 G T OR4C46 Missense_Mutation p.G110C 0.12 deleterious_low_confidence(0) benign(0.353) TCGA-CD-A4MI-01 11 5322281 5322281 C A OR51B4 Missense_Mutation p.S299I 0.13 tolerated(0.09) benign(0.017) TCGA-CD-A4MI-01 11 55541473 55541473 T C OR5D13 Missense_Mutation p.V187A 0.16 deleterious(0.02) benign(0.073) TCGA-CD-A4MI-01 11 59211096 59211096 A G OR5A1 Missense_Mutation p.Y152C 0.13 tolerated(0.14) probably_damaging(0.992) TCGA-CD-A4MI-01 11 61110054 61110054 C T DAK Silent p.T233T 0.15 TCGA-CD-A4MI-01 11 61672063 61672063 G A RAB3IL1 Missense_Mutation p.T285M 0.15 tolerated(0.07) benign(0.004) TCGA-CD-A4MI-01 11 61897874 61897874 C T INCENP Missense_Mutation p.T292M 0.13 deleterious(0.04) benign(0.194) TCGA-CD-A4MI-01 11 62286120 62286120 C T AHNAK Missense_Mutation p.A5257T 0.08 possibly_damaging(0.757) TCGA-CD-A4MI-01 11 62299988 62299988 G T AHNAK Missense_Mutation p.P634H 0.11 probably_damaging(1) TCGA-CD-A4MI-01 11 62407174 62407174 A - GANAB Frame_Shift_Del p.L23* 0.14 TCGA-CD-A4MI-01 11 62437477 62437479 CTT - C11orf48 In_Frame_Del p.K9del 0.10 TCGA-CD-A4MI-01 11 62491094 62491094 C T HNRNPUL2 Missense_Mutation p.G286R 0.09 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MI-01 11 63357621 63357621 C T PLA2G16 Missense_Mutation p.C113Y 0.17 deleterious(0) probably_damaging(1) TCGA-CD-A4MI-01 11 6340498 6340498 C T PRKCDBP Silent p.A227A 0.10 TCGA-CD-A4MI-01 11 63667452 63667452 C T MARK2 Missense_Mutation p.P213L 0.13 deleterious(0) probably_damaging(1) TCGA-CD-A4MI-01 11 6412941 6412941 C T SMPD1 Silent p.L216L 0.07 TCGA-CD-A4MI-01 11 6461427 6461427 G A HPX Missense_Mutation p.R102C 0.14 deleterious(0) probably_damaging(1) TCGA-CD-A4MI-01 11 65119253 65119253 G A DPF2 3'UTR 0.12 TCGA-CD-A4MI-01 11 65272709 65272709 T C MALAT1 RNA 0.15 TCGA-CD-A4MI-01 11 65294590 65294590 T C SCYL1 Splice_Site p.X283_splice 0.10 TCGA-CD-A4MI-01 11 65319752 65319752 C T LTBP3 Missense_Mutation p.A438T 0.09 tolerated(0.34) benign(0.043) TCGA-CD-A4MI-01 11 65409996 65409996 G A SIPA1 Silent p.L290L 0.13 TCGA-CD-A4MI-01 11 65417935 65417935 G A SIPA1 Silent p.Q989Q 0.06 TCGA-CD-A4MI-01 11 65650127 65650127 G A CTSW Missense_Mutation p.V196I 0.10 tolerated(0.12) benign(0.358) TCGA-CD-A4MI-01 11 65721060 65721060 C T TSGA10IP RNA 0.16 TCGA-CD-A4MI-01 11 65792833 65792833 C T CATSPER1 Missense_Mutation p.G340S 0.09 tolerated(0.85) benign(0.019) TCGA-CD-A4MI-01 11 66188741 66188741 G A NPAS4 Missense_Mutation p.E31K 0.07 deleterious(0.02) possibly_damaging(0.546) TCGA-CD-A4MI-01 11 66331392 66331392 G - CTSF 3'UTR 0.10 TCGA-CD-A4MI-01 11 6640672 6640672 T C TPP1 5'UTR 0.16 TCGA-CD-A4MI-01 11 66460509 66460509 G T SPTBN2 Missense_Mutation p.D1639E 0.10 tolerated(0.2) benign(0.417) TCGA-CD-A4MI-01 11 66625483 66625483 C T LRFN4 Missense_Mutation p.R90C 0.11 tolerated(0.14) probably_damaging(0.919) TCGA-CD-A4MI-01 11 67021875 67021875 A G KDM2A Missense_Mutation p.E1098G 0.15 deleterious(0) probably_damaging(0.946) TCGA-CD-A4MI-01 11 6867802 6867802 G A OR10A5 Missense_Mutation p.E297K 0.11 deleterious(0.02) benign(0.051) TCGA-CD-A4MI-01 11 70332482 70332482 A T SHANK2 Missense_Mutation p.S1307T 0.14 deleterious(0) benign(0.153) TCGA-CD-A4MI-01 11 71939176 71939176 C T INPPL1 Intron 0.12 TCGA-CD-A4MI-01 11 73074493 73074493 G A ARHGEF17 Missense_Mutation p.D1747N 0.07 deleterious(0.05) possibly_damaging(0.488) TCGA-CD-A4MI-01 11 74015430 74015430 A G P4HA3 Silent p.H76H 0.10 TCGA-CD-A4MI-01 11 76825449 76825449 G C CAPN5 Missense_Mutation p.S223T 0.11 tolerated(0.45) benign(0.007) TCGA-CD-A4MI-01 11 82877707 82877707 A C PCF11 Missense_Mutation p.S590R 0.13 tolerated(0.14) benign(0.347) TCGA-CD-A4MI-01 11 85436230 85436230 C A SYTL2 Missense_Mutation p.V424L 0.10 tolerated(0.12) benign(0.075) TCGA-CD-A4MI-01 11 8732756 8732756 A G ST5 Missense_Mutation p.M732T 0.15 tolerated(0.08) benign(0.446) TCGA-CD-A4MI-01 11 88045562 88045562 T C CTSC Missense_Mutation p.Q160R 0.12 tolerated(0.55) benign(0.001) TCGA-CD-A4MI-01 11 88300827 88300827 C A GRM5 Missense_Mutation p.G675V 0.18 deleterious(0) probably_damaging(1) TCGA-CD-A4MI-01 11 88780392 88780392 C T GRM5 Missense_Mutation p.V217M 0.11 deleterious(0.01) benign(0.116) TCGA-CD-A4MI-01 11 92918940 92918940 A - SLC36A4 Frame_Shift_Del p.F32Lfs*47 0.17 TCGA-CD-A4MI-01 11 9444593 9444593 A G IPO7 Missense_Mutation p.Y316C 0.09 deleterious(0) probably_damaging(1) TCGA-CD-A4MI-01 12 103696165 103696165 C T C12orf42 Silent p.A268A 0.15 TCGA-CD-A4MI-01 12 10460612 10460612 C T KLRD1 5'UTR 0.12 TCGA-CD-A4MI-01 12 105600917 105600917 G T APPL2 Nonsense_Mutation p.Y187* 0.15 TCGA-CD-A4MI-01 12 107109241 107109241 G A RFX4 Missense_Mutation p.V362M 0.19 deleterious(0) benign(0.159) TCGA-CD-A4MI-01 12 108106040 108106040 A T PWP1 3'UTR 0.19 TCGA-CD-A4MI-01 12 108641980 108641980 C T WSCD2 Missense_Mutation p.R520C 0.15 deleterious(0) probably_damaging(1) TCGA-CD-A4MI-01 12 109889606 109889606 C T KCTD10 Missense_Mutation p.E246K 0.17 deleterious(0) probably_damaging(0.995) TCGA-CD-A4MI-01 12 110017685 110017685 C A MVK Missense_Mutation p.A102D 0.12 tolerated(0.19) benign(0.011) TCGA-CD-A4MI-01 12 112481496 112481496 C T NAA25 Missense_Mutation p.R728H 0.14 tolerated(0.09) possibly_damaging(0.66) TCGA-CD-A4MI-01 12 112485541 112485543 TCT - NAA25 In_Frame_Del p.E644del 0.20 TCGA-CD-A4MI-01 12 112717172 112717172 A G HECTD4 Missense_Mutation p.L372P 0.16 probably_damaging(0.939) TCGA-CD-A4MI-01 12 113603710 113603710 G A DDX54 Silent p.N514N 0.17 TCGA-CD-A4MI-01 12 113906065 113906065 C A LHX5 Missense_Mutation p.R181L 0.11 deleterious(0) probably_damaging(0.997) TCGA-CD-A4MI-01 12 114841585 114841585 G A TBX5 Missense_Mutation p.S40L 0.12 tolerated(0.06) benign(0.038) TCGA-CD-A4MI-01 12 11546301 11546301 A G PRB2 Silent p.S237S 0.13 TCGA-CD-A4MI-01 12 119419617 119419617 G A SRRM4 5'UTR 0.29 TCGA-CD-A4MI-01 12 121854119 121854119 C T RNF34 Missense_Mutation p.T56M 0.08 deleterious(0.04) benign(0.024) TCGA-CD-A4MI-01 12 122677438 122677438 G A LRRC43 Silent p.S412S 0.12 TCGA-CD-A4MI-01 12 122691022 122691022 G A B3GNT4 Missense_Mutation p.R75Q 0.11 tolerated(1) benign(0.001) TCGA-CD-A4MI-01 12 124343781 124343781 G A DNAH10 Missense_Mutation p.V2121I 0.11 probably_damaging(0.992) TCGA-CD-A4MI-01 12 125591695 125591695 G T AACS Missense_Mutation p.G266C 0.14 deleterious(0.03) benign(0.053) TCGA-CD-A4MI-01 12 12630318 12630318 G A DUSP16 Nonsense_Mutation p.R483* 0.16 TCGA-CD-A4MI-01 12 129566363 129566363 C T TMEM132D Missense_Mutation p.A622T 0.12 deleterious(0) probably_damaging(0.977) TCGA-CD-A4MI-01 12 132241151 132241151 C T SFSWAP Missense_Mutation p.S561L 0.15 tolerated(0.2) benign(0.02) TCGA-CD-A4MI-01 12 13716856 13716856 C T GRIN2B Missense_Mutation p.E1106K 0.11 deleterious(0) probably_damaging(0.997) TCGA-CD-A4MI-01 12 14659149 14659149 G A PLBD1 Missense_Mutation p.R476C 0.10 deleterious(0) probably_damaging(1) TCGA-CD-A4MI-01 12 14794043 14794045 AGA - GUCY2C In_Frame_Del p.F680del 0.14 TCGA-CD-A4MI-01 12 21968783 21968783 T C ABCC9 Missense_Mutation p.K1313E 0.16 tolerated(0.35) benign(0.006) TCGA-CD-A4MI-01 12 22068751 22068751 G T ABCC9 Missense_Mutation p.L223M 0.12 tolerated(0.14) possibly_damaging(0.702) TCGA-CD-A4MI-01 12 248455 248455 G A IQSEC3 Silent p.S642S 0.31 TCGA-CD-A4MI-01 12 26580933 26580933 A G ITPR2 Silent p.G2286G 0.11 TCGA-CD-A4MI-01 12 34177054 34177054 T C ALG10 Missense_Mutation p.L110S 0.11 deleterious(0) possibly_damaging(0.898) TCGA-CD-A4MI-01 12 38714025 38714025 T - ALG10B Frame_Shift_Del p.F146Lfs*20 0.15 TCGA-CD-A4MI-01 12 394614 394614 A C KDM5A 3'UTR 0.15 TCGA-CD-A4MI-01 12 42491723 42491723 A G GXYLT1 Missense_Mutation p.F326S 0.13 tolerated(0.07) benign(0.021) TCGA-CD-A4MI-01 12 48189994 48189994 G A HDAC7 Missense_Mutation p.S264L 0.33 deleterious(0.01) benign(0.355) TCGA-CD-A4MI-01 12 48391985 48391985 C A COL2A1 Splice_Site p.X104_splice 0.14 TCGA-CD-A4MI-01 12 49177093 49177093 C T ADCY6 Missense_Mutation p.R42H 0.14 tolerated_low_confidence(0.14) benign(0.002) TCGA-CD-A4MI-01 12 49230000 49230000 C T DDX23 Missense_Mutation p.R429H 0.13 deleterious(0.02) possibly_damaging(0.563) TCGA-CD-A4MI-01 12 49315865 49315865 C A FKBP11 Missense_Mutation p.G170C 0.09 tolerated(0.11) benign(0.086) TCGA-CD-A4MI-01 12 49440558 49440558 G A KMT2D Silent p.L1418L 0.12 TCGA-CD-A4MI-01 12 49440559 49440559 C T KMT2D Missense_Mutation p.M1417I 0.12 possibly_damaging(0.869) TCGA-CD-A4MI-01 12 49445500 49445500 G - KMT2D Frame_Shift_Del p.L656Cfs*274 0.15 TCGA-CD-A4MI-01 12 49691041 49691041 C T PRPH Silent p.D327D 0.21 TCGA-CD-A4MI-01 12 50594715 50594715 C A LIMA1 Intron 0.19 TCGA-CD-A4MI-01 12 52774338 52774338 C T KRT84 Silent p.E411E 0.13 TCGA-CD-A4MI-01 12 53097189 53097189 C T KRT77 Silent p.A10A 0.08 TCGA-CD-A4MI-01 12 54577528 54577528 C T SMUG1 Missense_Mutation p.R66H 0.14 tolerated(0.24) benign(0.003) TCGA-CD-A4MI-01 12 54812875 54812875 T C ITGA5 Silent p.P36P 0.13 TCGA-CD-A4MI-01 12 55039032 55039032 C T DCD Missense_Mutation p.G72R 0.18 deleterious_low_confidence(0.03) probably_damaging(0.98) TCGA-CD-A4MI-01 12 55795222 55795222 A - OR6C65 Frame_Shift_Del p.I306Yfs*4 0.11 TCGA-CD-A4MI-01 12 56397746 56397746 G A SUOX Silent p.Q191Q 0.14 TCGA-CD-A4MI-01 12 56847487 56847487 G A MIP Missense_Mutation p.T138M 0.13 deleterious(0.01) possibly_damaging(0.694) TCGA-CD-A4MI-01 12 5963246 5963246 T C ANO2 Missense_Mutation p.E195G 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-CD-A4MI-01 12 6669713 6669713 C T NOP2 Missense_Mutation p.C520Y 0.09 deleterious(0.01) probably_damaging(0.992) TCGA-CD-A4MI-01 12 6925423 6925423 C A CD4 Missense_Mutation p.P270H 0.15 tolerated(0.54) probably_damaging(0.971) TCGA-CD-A4MI-01 12 7024881 7024881 A G ENO2 5'UTR 0.14 TCGA-CD-A4MI-01 12 71978276 71978276 A G LGR5 Missense_Mutation p.E829G 0.13 deleterious(0.01) benign(0.1) TCGA-CD-A4MI-01 12 75434845 75434845 C T KCNC2 3'UTR 0.23 TCGA-CD-A4MI-01 12 8083159 8083159 A G SLC2A3 Missense_Mutation p.L197P 0.13 deleterious(0) probably_damaging(0.988) TCGA-CD-A4MI-01 12 8288248 8288248 T C CLEC4A Silent p.T122T 0.07 TCGA-CD-A4MI-01 12 8375189 8375189 G A FAM90A1 Silent p.A208A 0.10 TCGA-CD-A4MI-01 12 85554467 85554467 G A LRRIQ1 Silent p.Q1599Q 0.16 TCGA-CD-A4MI-01 12 88390245 88390245 A G C12orf50 Silent p.H129H 0.10 TCGA-CD-A4MI-01 12 89992959 89992959 C A ATP2B1 Missense_Mutation p.A1096S 0.13 tolerated(0.15) possibly_damaging(0.577) TCGA-CD-A4MI-01 12 91365683 91365683 C T EPYC Missense_Mutation p.R199H 0.16 deleterious(0.04) possibly_damaging(0.757) TCGA-CD-A4MI-01 12 9251308 9251308 G A A2M Silent p.H582H 0.16 TCGA-CD-A4MI-01 12 96640801 96640801 G A ELK3 Silent p.A97A 0.18 TCGA-CD-A4MI-01 13 100634965 100634965 C A ZIC2 Missense_Mutation p.P216H 0.10 tolerated(0.19) possibly_damaging(0.72) TCGA-CD-A4MI-01 13 103249495 103249495 G - TPP2 Frame_Shift_Del p.V38Cfs*39 0.24 TCGA-CD-A4MI-01 13 103328732 103328732 A C TPP2 Missense_Mutation p.K1209N 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-CD-A4MI-01 13 111371952 111371952 C T ING1 Silent p.G314G 0.15 TCGA-CD-A4MI-01 13 113508592 113508592 G T ATP11A Splice_Site p.X664_splice 0.15 TCGA-CD-A4MI-01 13 114304805 114304805 G A ATP4B Silent p.L210L 0.12 TCGA-CD-A4MI-01 13 114514859 114514859 C - TMEM255B Frame_Shift_Del p.Y324Tfs*9 0.10 TCGA-CD-A4MI-01 13 21429828 21429828 T C XPO4 Missense_Mutation p.I132V 0.14 tolerated(0.28) benign(0.04) TCGA-CD-A4MI-01 13 25367209 25367209 A G RNF17 Missense_Mutation p.Q322R 0.12 tolerated(0.44) possibly_damaging(0.775) TCGA-CD-A4MI-01 13 25914139 25914139 G T NUPL1 Missense_Mutation p.S556I 0.13 deleterious(0) probably_damaging(0.998) TCGA-CD-A4MI-01 13 28913392 28913392 G T FLT1 Missense_Mutation p.P801T 0.09 tolerated(0.09) probably_damaging(0.987) TCGA-CD-A4MI-01 13 32747633 32747633 G A FRY Missense_Mutation p.V761I 0.11 tolerated(0.1) benign(0.075) TCGA-CD-A4MI-01 13 32913836 32913837 - A BRCA2 Frame_Shift_Ins p.N1784Kfs*3 0.10 TCGA-CD-A4MI-01 13 35685067 35685067 T C NBEA Missense_Mutation p.W652R 0.12 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MI-01 13 42407524 42407524 C T VWA8 Silent p.T523T 0.08 TCGA-CD-A4MI-01 13 43659911 43659911 G A DNAJC15 Missense_Mutation p.A107T 0.13 tolerated(0.05) probably_damaging(1) TCGA-CD-A4MI-01 13 44948177 44948177 C T SERP2 Missense_Mutation p.R6W 0.22 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MI-01 13 46287535 46287535 C T SPERT Silent p.D125D 0.12 TCGA-CD-A4MI-01 13 50097316 50097316 C T PHF11 Silent p.P192P 0.09 TCGA-CD-A4MI-01 13 53420216 53420216 C - PCDH8 Frame_Shift_Del p.A786Pfs*151 0.19 TCGA-CD-A4MI-01 13 76407186 76407186 G T LMO7 Splice_Site p.X751_splice 0.11 TCGA-CD-A4MI-01 13 77672621 77672621 C A MYCBP2 Nonsense_Mutation p.E2852* 0.07 TCGA-CD-A4MI-01 13 97639036 97639036 C T OXGR1 Silent p.E326E 0.10 TCGA-CD-A4MI-01 14 103807325 103807325 T C EIF5 Missense_Mutation p.V411A 0.10 tolerated(0.76) benign(0.037) TCGA-CD-A4MI-01 14 105353595 105353595 T C CEP170B Missense_Mutation p.S1007P 0.17 tolerated(0.13) benign(0) TCGA-CD-A4MI-01 14 105416224 105416224 G A AHNAK2 Missense_Mutation p.A1855V 0.13 probably_damaging(0.954) TCGA-CD-A4MI-01 14 105715487 105715487 T G BRF1 Intron 0.23 TCGA-CD-A4MI-01 14 21811292 21811292 A G RPGRIP1 Missense_Mutation p.Y1146C 0.14 tolerated(0.07) probably_damaging(0.999) TCGA-CD-A4MI-01 14 22315228 22315228 G A TRAV8-2 Missense_Mutation p.V56M 0.10 deleterious(0.04) possibly_damaging(0.862) TCGA-CD-A4MI-01 14 23342624 23342624 C A LRP10 Missense_Mutation p.L62M 0.15 deleterious(0.05) benign(0.352) TCGA-CD-A4MI-01 14 23393383 23393383 G A PRMT5 Silent p.N403N 0.17 TCGA-CD-A4MI-01 14 23853688 23853688 C A MYH6 Missense_Mutation p.R1843M 0.12 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MI-01 14 23862141 23862141 C T MYH6 Silent p.Q1077Q 0.16 TCGA-CD-A4MI-01 14 23889338 23889338 C T MYH7 Missense_Mutation p.E1148K 0.09 deleterious(0) probably_damaging(0.996) TCGA-CD-A4MI-01 14 24664130 24664130 G A TM9SF1 Silent p.G32G 0.09 TCGA-CD-A4MI-01 14 24795334 24795334 T C ADCY4 Missense_Mutation p.T536A 0.19 tolerated(0.69) benign(0.077) TCGA-CD-A4MI-01 14 24846034 24846034 G A NFATC4 Missense_Mutation p.S927N 0.11 tolerated_low_confidence(0.1) benign(0.021) TCGA-CD-A4MI-01 14 28733890 28733890 A - BNIP3P1 RNA 0.08 TCGA-CD-A4MI-01 14 28734355 28734355 A T BNIP3P1 RNA 0.10 TCGA-CD-A4MI-01 14 36190891 36190891 T C RALGAPA1 Intron 0.12 TCGA-CD-A4MI-01 14 52496277 52496277 G A NID2 Missense_Mutation p.R797W 0.08 tolerated(0.07) benign(0.117) TCGA-CD-A4MI-01 14 59951744 59951744 A - JKAMP Intron 0.19 TCGA-CD-A4MI-01 14 63749933 63749933 C T RHOJ Missense_Mutation p.A166V 0.16 deleterious(0) benign(0.067) TCGA-CD-A4MI-01 14 64519635 64519635 A - SYNE2 Frame_Shift_Del p.V3004Cfs*7 0.08 TCGA-CD-A4MI-01 14 64681100 64681100 C - SYNE2 Frame_Shift_Del p.L6417Wfs*30 0.13 TCGA-CD-A4MI-01 14 69256455 69256455 C - ZFP36L1 Frame_Shift_Del p.G271Vfs*36 0.14 TCGA-CD-A4MI-01 14 69341670 69341670 G A ACTN1 Missense_Mutation p.A884V 0.09 tolerated(0.06) possibly_damaging(0.819) TCGA-CD-A4MI-01 14 69806298 69806298 T C GALNT16 Silent p.Y383Y 0.11 TCGA-CD-A4MI-01 14 71109099 71109099 C T TTC9 Silent p.L85L 0.40 TCGA-CD-A4MI-01 14 72128161 72128161 G A SIPA1L1 Silent p.P744P 0.13 TCGA-CD-A4MI-01 14 73989730 73989730 C T HEATR4 Missense_Mutation p.V43I 0.12 tolerated(0.41) benign(0.01) TCGA-CD-A4MI-01 14 74196362 74196362 A C ELMSAN1 Missense_Mutation p.H692Q 0.11 tolerated(0.44) probably_damaging(0.972) TCGA-CD-A4MI-01 14 74205773 74205773 G - ELMSAN1 Frame_Shift_Del p.N314Tfs*4 0.17 TCGA-CD-A4MI-01 14 75359617 75359617 C - DLST Frame_Shift_Del p.P176Lfs*27 0.11 TCGA-CD-A4MI-01 14 76427265 76427265 C T TGFB3 Splice_Site p.X360_splice 0.19 TCGA-CD-A4MI-01 14 77844529 77844529 A G SAMD15 Silent p.P256P 0.16 TCGA-CD-A4MI-01 14 79181293 79181293 C T NRXN3 Missense_Mutation p.R246C 0.13 deleterious(0) probably_damaging(0.994) TCGA-CD-A4MI-01 14 88945851 88945851 C T PTPN21 Missense_Mutation p.G642R 0.23 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-CD-A4MI-01 14 90528604 90528604 C T KCNK13 Missense_Mutation p.R19C 0.44 deleterious(0) probably_damaging(1) TCGA-CD-A4MI-01 14 92601758 92601758 A G CPSF2 Missense_Mutation p.I155V 0.14 tolerated(0.11) possibly_damaging(0.669) TCGA-CD-A4MI-01 14 93709015 93709015 T - BTBD7 Frame_Shift_Del p.K1001Nfs*60 0.13 TCGA-CD-A4MI-01 14 95562465 95562465 C T DICER1 Missense_Mutation p.D1598N 0.11 tolerated(0.24) benign(0.003) TCGA-CD-A4MI-01 15 22954217 22954217 C T CYFIP1 Missense_Mutation p.A456V 0.14 deleterious(0) possibly_damaging(0.553) TCGA-CD-A4MI-01 15 23335648 23335648 A - HERC2P2 RNA 0.14 TCGA-CD-A4MI-01 15 23890196 23890196 G A MAGEL2 Silent p.S295S 0.11 TCGA-CD-A4MI-01 15 25958904 25958904 C A ATP10A Missense_Mutation p.R754L 0.13 deleterious(0) probably_damaging(0.969) TCGA-CD-A4MI-01 15 28202854 28202854 C T OCA2 Missense_Mutation p.R555H 0.06 deleterious(0.03) possibly_damaging(0.563) TCGA-CD-A4MI-01 15 30927759 30927761 CAT - ARHGAP11B In_Frame_Del p.H245del 0.09 TCGA-CD-A4MI-01 15 31294572 31294572 C T TRPM1 Missense_Mutation p.R1461H 0.10 tolerated_low_confidence(0.12) benign(0.003) TCGA-CD-A4MI-01 15 33954456 33954456 C T RYR3 Silent p.R1575R 0.15 TCGA-CD-A4MI-01 15 33999249 33999249 G A RYR3 Missense_Mutation p.V2205M 0.11 possibly_damaging(0.61) TCGA-CD-A4MI-01 15 34030748 34030748 C T RYR3 Missense_Mutation p.T2538M 0.14 probably_damaging(0.959) TCGA-CD-A4MI-01 15 39874866 39874866 C T THBS1 Silent p.D180D 0.07 TCGA-CD-A4MI-01 15 40751366 40751366 C T BAHD1 Missense_Mutation p.R235C 0.15 deleterious(0.02) benign(0.003) TCGA-CD-A4MI-01 15 40917160 40917160 A - CASC5 Frame_Shift_Del p.T1594Lfs*5 0.11 TCGA-CD-A4MI-01 15 41228765 41228765 T C DLL4 Missense_Mutation p.F527S 0.15 tolerated(0.06) possibly_damaging(0.638) TCGA-CD-A4MI-01 15 43579478 43579478 C T TGM7 Missense_Mutation p.V289I 0.14 deleterious(0.03) benign(0.405) TCGA-CD-A4MI-01 15 43675661 43675661 G - TUBGCP4 Frame_Shift_Del p.G229Dfs*2 0.11 TCGA-CD-A4MI-01 15 43814151 43814151 C T MAP1A Silent p.C160C 0.07 TCGA-CD-A4MI-01 15 43818213 43818213 G A MAP1A Silent p.T1514T 0.16 TCGA-CD-A4MI-01 15 45003786 45003789 TCTT - B2M Frame_Shift_Del p.S16Afs*27 0.16 TCGA-CD-A4MI-01 15 48052500 48052500 G A SEMA6D Splice_Site p.X37_splice 0.13 TCGA-CD-A4MI-01 15 48730036 48730036 T C FBN1 Missense_Mutation p.Q2081R 0.13 benign(0.422) TCGA-CD-A4MI-01 15 51828804 51828804 C T DMXL2 Missense_Mutation p.A625T 0.11 tolerated(0.41) probably_damaging(0.999) TCGA-CD-A4MI-01 15 54542453 54542453 G A UNC13C Missense_Mutation p.A1087T 0.06 deleterious_low_confidence(0) possibly_damaging(0.579) TCGA-CD-A4MI-01 15 63970208 63970208 C T HERC1 Silent p.E2302E 0.08 TCGA-CD-A4MI-01 15 63972743 63972743 T - HERC1 Frame_Shift_Del p.N2153Mfs*7 0.17 TCGA-CD-A4MI-01 15 64446187 64446187 G A SNX22 Missense_Mutation p.C149Y 0.10 tolerated(0.87) benign(0) TCGA-CD-A4MI-01 15 64967247 64967247 A - ZNF609 Frame_Shift_Del p.K734Rfs*12 0.15 TCGA-CD-A4MI-01 15 69238875 69238875 A - SPESP1 Frame_Shift_Del p.N336Ifs*12 0.08 TCGA-CD-A4MI-01 15 73007688 73007688 T C BBS4 Missense_Mutation p.C93R 0.12 deleterious(0) probably_damaging(0.977) TCGA-CD-A4MI-01 15 73616127 73616127 G - HCN4 Frame_Shift_Del p.T770Rfs*8 0.17 TCGA-CD-A4MI-01 15 74623544 74623544 G T CCDC33 Missense_Mutation p.V560L 0.17 deleterious(0) possibly_damaging(0.893) TCGA-CD-A4MI-01 15 75105256 75105256 C A LMAN1L Missense_Mutation p.H21N 0.10 deleterious(0.03) benign(0.231) TCGA-CD-A4MI-01 15 76019508 76019508 T C ODF3L1 Missense_Mutation p.V151A 0.12 tolerated(0.64) possibly_damaging(0.48) TCGA-CD-A4MI-01 15 76629216 76629216 T - ISL2 5'UTR 0.19 TCGA-CD-A4MI-01 15 77348191 77348191 C T TSPAN3 Silent p.L90L 0.12 TCGA-CD-A4MI-01 15 79189365 79189365 G A MORF4L1 Missense_Mutation p.D349N 0.12 tolerated(0.08) benign(0.226) TCGA-CD-A4MI-01 15 80866507 80866507 G T ARNT2 Missense_Mutation p.Q445H 0.15 tolerated(0.06) benign(0.137) TCGA-CD-A4MI-01 15 81601118 81601118 C T IL16 Silent p.T1326T 0.14 TCGA-CD-A4MI-01 15 82336174 82336174 C - MEX3B Frame_Shift_Del p.G346Efs*181 0.17 TCGA-CD-A4MI-01 15 85147384 85147384 G A ZSCAN2 Missense_Mutation p.A76T 0.14 deleterious(0.01) benign(0.122) TCGA-CD-A4MI-01 15 89862465 89862468 GCAG - POLG Frame_Shift_Del p.T1032Kfs*61 0.20 TCGA-CD-A4MI-01 16 11012339 11012339 C T CIITA Silent p.L1035L 0.14 TCGA-CD-A4MI-01 16 11931680 11931680 T - RSL1D1 Frame_Shift_Del p.K479Nfs*40 0.17 TCGA-CD-A4MI-01 16 135514 135514 G A MPG Missense_Mutation p.R212H 0.14 tolerated(0.33) benign(0.022) TCGA-CD-A4MI-01 16 1536186 1536186 G - PTX4 Frame_Shift_Del p.G393Efs*57 0.20 TCGA-CD-A4MI-01 16 16101774 16101774 C - ABCC1 Frame_Shift_Del p.F52Sfs*16 0.13 TCGA-CD-A4MI-01 16 19451656 19451656 C A TMC5 Missense_Mutation p.P99Q 0.12 tolerated_low_confidence(0.11) benign(0.012) TCGA-CD-A4MI-01 16 20796371 20796371 A - ACSM3 Frame_Shift_Del p.K363Nfs*21 0.16 TCGA-CD-A4MI-01 16 22359005 22359005 G A CDR2 Missense_Mutation p.R216W 0.11 deleterious(0.05) benign(0.201) TCGA-CD-A4MI-01 16 2237063 2237063 C T CASKIN1 Silent p.A282A 0.08 TCGA-CD-A4MI-01 16 2329104 2329104 G A ABCA3 Nonsense_Mutation p.Q1463* 0.15 TCGA-CD-A4MI-01 16 23698897 23698898 CA - PLK1 Frame_Shift_Del p.H382Qfs*19 0.15 TCGA-CD-A4MI-01 16 23703645 23703645 G A ERN2 Missense_Mutation p.A751V 0.10 deleterious(0) probably_damaging(0.955) TCGA-CD-A4MI-01 16 24835206 24835206 C T TNRC6A 3'UTR 0.21 TCGA-CD-A4MI-01 16 27499732 27499732 G A GTF3C1 Silent p.N1172N 0.07 TCGA-CD-A4MI-01 16 2815886 2815886 G A SRRM2 Missense_Mutation p.R1786Q 0.14 unknown(0) TCGA-CD-A4MI-01 16 28847350 28847350 G - ATXN2L Frame_Shift_Del p.Q1002Kfs*95 0.12 TCGA-CD-A4MI-01 16 29824719 29824719 G A PRRT2 Missense_Mutation p.S115N 0.09 tolerated_low_confidence(0.55) benign(0.013) TCGA-CD-A4MI-01 16 30616285 30616285 C T ZNF689 Missense_Mutation p.R268H 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-CD-A4MI-01 16 3063895 3063895 G - CLDN9 Frame_Shift_Del p.L180Sfs*196 0.09 TCGA-CD-A4MI-01 16 30735944 30735944 T G SRCAP Silent p.S1733S 0.11 TCGA-CD-A4MI-01 16 30762564 30762564 C G PHKG2 Missense_Mutation p.T78R 0.10 deleterious(0) possibly_damaging(0.774) TCGA-CD-A4MI-01 16 31374534 31374534 C T ITGAX Missense_Mutation p.P517S 0.11 deleterious(0.01) probably_damaging(0.989) TCGA-CD-A4MI-01 16 31497187 31497187 T G SLC5A2 Silent p.L147L 0.18 TCGA-CD-A4MI-01 16 337157 337157 C - PDIA2 3'UTR 0.20 TCGA-CD-A4MI-01 16 3434841 3434841 G A ZSCAN32 Silent p.S72S 0.12 TCGA-CD-A4MI-01 16 4016604 4016604 G A ADCY9 Silent p.G1078G 0.14 TCGA-CD-A4MI-01 16 4848176 4848176 C T ROGDI Missense_Mutation p.A181T 0.09 tolerated(1) benign(0.009) TCGA-CD-A4MI-01 16 49670025 49670025 A G ZNF423 Missense_Mutation p.L1013P 0.13 deleterious(0.02) possibly_damaging(0.667) TCGA-CD-A4MI-01 16 51171374 51171374 G A SALL1 Silent p.G1208G 0.08 TCGA-CD-A4MI-01 16 53730177 53730177 C T RPGRIP1L Missense_Mutation p.R39H 0.08 deleterious(0.03) benign(0.047) TCGA-CD-A4MI-01 16 55601280 55601280 G A CAPNS2 Missense_Mutation p.M204I 0.15 tolerated(0.7) benign(0.002) TCGA-CD-A4MI-01 16 57505123 57505123 T C POLR2C 3'UTR 0.32 TCGA-CD-A4MI-01 16 57918087 57918087 C A CNGB1 Missense_Mutation p.R1246M 0.08 deleterious(0.01) benign(0.084) TCGA-CD-A4MI-01 16 58324917 58324917 C T PRSS54 Missense_Mutation p.G70D 0.09 deleterious(0) probably_damaging(0.993) TCGA-CD-A4MI-01 16 66886682 66886682 C T CA7 Missense_Mutation p.T195I 0.13 deleterious(0) probably_damaging(1) TCGA-CD-A4MI-01 16 67221487 67221487 C T EXOC3L1 Silent p.A227A 0.09 TCGA-CD-A4MI-01 16 67262461 67262461 C T TMEM208 Nonsense_Mutation p.R76* 0.19 TCGA-CD-A4MI-01 16 68248260 68248260 G A NFATC3 Intron 0.11 TCGA-CD-A4MI-01 16 68330529 68330529 G A SLC7A6 Splice_Site p.X424_splice 0.11 TCGA-CD-A4MI-01 16 69660331 69660331 G T NFAT5 Missense_Mutation p.K51N 0.12 probably_damaging(0.983) TCGA-CD-A4MI-01 16 69727103 69727103 C A NFAT5 Silent p.T1125T 0.17 TCGA-CD-A4MI-01 16 69727684 69727684 A G NFAT5 Missense_Mutation p.Q1319R 0.16 probably_damaging(0.978) TCGA-CD-A4MI-01 16 70057543 70057543 G T PDXDC2P RNA 0.11 TCGA-CD-A4MI-01 16 70305734 70305734 G A AARS Silent p.D207D 0.08 TCGA-CD-A4MI-01 16 72822269 72822269 C T ZFHX3 Silent p.L3302L 0.18 TCGA-CD-A4MI-01 16 72992505 72992505 C T ZFHX3 Missense_Mutation p.A514T 0.12 benign(0.01) TCGA-CD-A4MI-01 16 75263732 75263732 C T BCAR1 Missense_Mutation p.A810T 0.06 deleterious(0) probably_damaging(0.998) TCGA-CD-A4MI-01 16 81087635 81087635 C A RP11-303E16.5 5'Flank 0.15 TCGA-CD-A4MI-01 16 82104706 82104706 G T HSD17B2 Missense_Mutation p.R213M 0.13 deleterious(0) probably_damaging(1) TCGA-CD-A4MI-01 16 85009967 85009967 G A ZDHHC7 Silent p.G340G 0.17 TCGA-CD-A4MI-01 16 85010039 85010039 G - ZDHHC7 Frame_Shift_Del p.S317Hfs*5 0.14 TCGA-CD-A4MI-01 16 86602471 86602471 C T FOXC2 3'UTR 0.13 TCGA-CD-A4MI-01 16 87493704 87493704 C T ZCCHC14 Missense_Mutation p.V65I 0.15 tolerated(0.27) benign(0.025) TCGA-CD-A4MI-01 16 89293323 89293323 T C ZNF778 Silent p.S181S 0.08 TCGA-CD-A4MI-01 16 8987861 8987861 A G USP7 Silent p.H1101H 0.10 TCGA-CD-A4MI-01 16 8993506 8993508 ATC - USP7 In_Frame_Del p.D806del 0.16 TCGA-CD-A4MI-01 17 11556249 11556249 G A DNAH9 Missense_Mutation p.R842Q 0.15 benign(0.006) TCGA-CD-A4MI-01 17 1538704 1538704 C T SCARF1 Missense_Mutation p.R614Q 0.10 deleterious(0.01) probably_damaging(0.956) TCGA-CD-A4MI-01 17 17696894 17696894 A G RAI1 Missense_Mutation p.Q211R 0.13 deleterious(0) benign(0.076) TCGA-CD-A4MI-01 17 18188830 18188830 C A TOP3A Silent p.T534T 0.15 TCGA-CD-A4MI-01 17 1841018 1841018 G A RTN4RL1 Missense_Mutation p.P33L 0.13 tolerated(0.06) benign(0.348) TCGA-CD-A4MI-01 17 18907391 18907391 T C FAM83G 5'UTR 0.11 TCGA-CD-A4MI-01 17 19284070 19284070 T C MAPK7 Missense_Mutation p.L183P 0.13 deleterious(0) probably_damaging(0.968) TCGA-CD-A4MI-01 17 19582127 19582127 C T SLC47A2 Missense_Mutation p.A561T 0.13 tolerated(0.38) benign(0.002) TCGA-CD-A4MI-01 17 21101950 21101950 C T TMEM11 Missense_Mutation p.G89D 0.14 deleterious(0) benign(0.42) TCGA-CD-A4MI-01 17 21319207 21319207 G A KCNJ12 Missense_Mutation p.A185T 0.08 tolerated(0.19) possibly_damaging(0.847) TCGA-CD-A4MI-01 17 2186096 2186096 G A SMG6 Missense_Mutation p.R836W 0.11 tolerated(0.18) possibly_damaging(0.67) TCGA-CD-A4MI-01 17 2227499 2227500 - C TSR1 Frame_Shift_Ins p.M803Hfs*26 0.12 TCGA-CD-A4MI-01 17 27296914 27296914 C - SEZ6 Frame_Shift_Del p.P306Lfs*27 0.31 TCGA-CD-A4MI-01 17 32688803 32688803 C T CCL1 Splice_Site p.X63_splice 0.10 TCGA-CD-A4MI-01 17 3336588 3336588 A G OR1E2 Missense_Mutation p.I183T 0.12 deleterious(0) probably_damaging(0.928) TCGA-CD-A4MI-01 17 36499065 36499065 G A GPR179 Missense_Mutation p.T203I 0.10 deleterious(0.03) benign(0.055) TCGA-CD-A4MI-01 17 37922216 37922216 G A IKZF3 Missense_Mutation p.R453W 0.10 deleterious(0) possibly_damaging(0.816) TCGA-CD-A4MI-01 17 38641181 38641181 C T TNS4 Missense_Mutation p.R456Q 0.12 deleterious(0) probably_damaging(1) TCGA-CD-A4MI-01 17 38910657 38910657 C A KRT25 Missense_Mutation p.A165S 0.19 deleterious(0.02) probably_damaging(0.993) TCGA-CD-A4MI-01 17 39305733 39305733 C T KRTAP4-5 Missense_Mutation p.C96Y 0.13 unknown(0) TCGA-CD-A4MI-01 17 40255749 40255749 C A DHX58 Missense_Mutation p.R544L 0.09 tolerated(0.12) benign(0.433) TCGA-CD-A4MI-01 17 40271369 40271369 G A KAT2A Missense_Mutation p.R323W 0.10 deleterious(0) probably_damaging(0.997) TCGA-CD-A4MI-01 17 40695344 40695344 C T NAGLU Silent p.G440G 0.19 TCGA-CD-A4MI-01 17 40725006 40725006 C T PSMC3IP Missense_Mutation p.V212I 0.16 tolerated(0.05) benign(0.067) TCGA-CD-A4MI-01 17 40874914 40874914 A - EZH1 Frame_Shift_Del p.L129Cfs*11 0.18 TCGA-CD-A4MI-01 17 41020660 41020660 G A AOC4P RNA 0.12 TCGA-CD-A4MI-01 17 4145690 4145690 T C ANKFY1 Missense_Mutation p.K64E 0.14 deleterious(0.01) probably_damaging(0.991) TCGA-CD-A4MI-01 17 41582101 41582101 A G DHX8 Missense_Mutation p.N546D 0.10 tolerated(0.14) benign(0.003) TCGA-CD-A4MI-01 17 42152386 42152386 G A G6PC3 Missense_Mutation p.A156T 0.13 deleterious(0.01) probably_damaging(0.92) TCGA-CD-A4MI-01 17 4539052 4539052 A G ALOX15 Splice_Site p.X387_splice 0.18 TCGA-CD-A4MI-01 17 45993964 45993964 C A SP2 Missense_Mutation p.P176H 0.18 tolerated(0.07) benign(0.059) TCGA-CD-A4MI-01 17 46135788 46135788 G - NFE2L1 Frame_Shift_Del p.G370Afs*44 0.09 TCGA-CD-A4MI-01 17 4636528 4636528 C A MED11 3'UTR 0.20 TCGA-CD-A4MI-01 17 46628308 46628308 G A HOXB3 Silent p.S228S 0.10 TCGA-CD-A4MI-01 17 4700797 4700797 C T PSMB6 Missense_Mutation p.R79C 0.20 deleterious(0) possibly_damaging(0.85) TCGA-CD-A4MI-01 17 47389292 47389292 G A ZNF652 Silent p.C387C 0.10 TCGA-CD-A4MI-01 17 47679303 47679303 C T SPOP Missense_Mutation p.A302T 0.17 deleterious(0.04) benign(0.151) TCGA-CD-A4MI-01 17 48046798 48046798 C T DLX4 5'UTR 0.09 TCGA-CD-A4MI-01 17 4883429 4883429 T C CAMTA2 Silent p.V419V 0.14 TCGA-CD-A4MI-01 17 48917397 48917397 C T WFIKKN2 Missense_Mutation p.R250W 0.18 deleterious(0.03) probably_damaging(0.932) TCGA-CD-A4MI-01 17 53076712 53076712 C T STXBP4 Missense_Mutation p.R63C 0.12 deleterious(0.01) possibly_damaging(0.638) TCGA-CD-A4MI-01 17 59878681 59878681 A G BRIP1 Missense_Mutation p.L358P 0.12 deleterious(0) probably_damaging(0.991) TCGA-CD-A4MI-01 17 61898199 61898199 C T FTSJ3 Missense_Mutation p.R691Q 0.19 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MI-01 17 63206652 63206652 C A RGS9 Missense_Mutation p.P446T 0.16 deleterious(0) probably_damaging(1) TCGA-CD-A4MI-01 17 6376136 6376136 G A PITPNM3 Missense_Mutation p.R424C 0.15 deleterious(0) probably_damaging(0.953) TCGA-CD-A4MI-01 17 6606371 6606371 T C SLC13A5 Missense_Mutation p.I212V 0.12 tolerated(1) benign(0.009) TCGA-CD-A4MI-01 17 66986022 66986022 T - ABCA9 Frame_Shift_Del p.K1296Rfs*27 0.09 TCGA-CD-A4MI-01 17 67178331 67178331 G A ABCA10 Missense_Mutation p.T911M 0.13 deleterious(0.01) probably_damaging(0.988) TCGA-CD-A4MI-01 17 72240133 72240133 C T TTYH2 Missense_Mutation p.A250V 0.10 tolerated(1) benign(0.002) TCGA-CD-A4MI-01 17 7250431 7250431 G A ACAP1 Missense_Mutation p.G405R 0.11 tolerated(0.19) benign(0.006) TCGA-CD-A4MI-01 17 73495442 73495442 C T KIAA0195 3'UTR 0.13 TCGA-CD-A4MI-01 17 73748642 73748642 C T ITGB4 Silent p.S1364S 0.16 TCGA-CD-A4MI-01 17 73819409 73819409 G A UNK Missense_Mutation p.E695K 0.09 deleterious(0.01) probably_damaging(0.991) TCGA-CD-A4MI-01 17 74732342 74732343 - GACCGA SRSF2 In_Frame_Ins p.R190_S191dup 0.08 TCGA-CD-A4MI-01 17 75484906 75484906 G A SEPT9 Missense_Mutation p.V408I 0.09 tolerated(0.15) possibly_damaging(0.844) TCGA-CD-A4MI-01 17 76415691 76415691 G A PGS1 Missense_Mutation p.R539H 0.15 deleterious(0) possibly_damaging(0.459) TCGA-CD-A4MI-01 17 77926499 77926499 G A TBC1D16 Missense_Mutation p.R300C 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-CD-A4MI-01 17 78195522 78195522 G A SLC26A11 Missense_Mutation p.G55S 0.13 deleterious(0) probably_damaging(0.994) TCGA-CD-A4MI-01 17 79094232 79094232 G A AATK Silent p.S1168S 0.22 TCGA-CD-A4MI-01 17 79826767 79826769 CTT - ARHGDIA In_Frame_Del p.K200del 0.16 TCGA-CD-A4MI-01 17 79910971 79910971 G A NOTUM Nonsense_Mutation p.R453* 0.12 TCGA-CD-A4MI-01 17 80399708 80399708 G A HEXDC Missense_Mutation p.A429T 0.12 deleterious_low_confidence(0) benign(0.101) TCGA-CD-A4MI-01 17 8170707 8170707 G C PFAS Missense_Mutation p.V1065L 0.15 deleterious(0) possibly_damaging(0.571) TCGA-CD-A4MI-01 17 8224225 8224225 G A ARHGEF15 Missense_Mutation p.E814K 0.14 tolerated(0.07) benign(0.011) TCGA-CD-A4MI-01 17 9066226 9066226 G A NTN1 Missense_Mutation p.R372H 0.21 deleterious(0) probably_damaging(0.97) TCGA-CD-A4MI-01 18 13885437 13885437 C T MC2R Silent p.P27P 0.08 TCGA-CD-A4MI-01 18 20833000 20833000 A G CABLES1 Missense_Mutation p.H508R 0.18 deleterious(0.02) possibly_damaging(0.836) TCGA-CD-A4MI-01 18 21500978 21500978 G C LAMA3 Missense_Mutation p.R2668T 0.08 benign(0.014) TCGA-CD-A4MI-01 18 29040826 29040826 G T DSG3 Missense_Mutation p.G239C 0.12 deleterious(0) probably_damaging(1) TCGA-CD-A4MI-01 18 3597090 3597090 T - DLGAP1 Intron 0.38 TCGA-CD-A4MI-01 18 42531485 42531485 G A SETBP1 Missense_Mutation p.R727Q 0.14 deleterious(0) probably_damaging(0.994) TCGA-CD-A4MI-01 18 43319189 43319189 G T SLC14A1 Missense_Mutation p.G298V 0.12 deleterious(0) probably_damaging(0.995) TCGA-CD-A4MI-01 18 43464743 43464743 T C EPG5 Missense_Mutation p.K1715E 0.12 tolerated(0.07) benign(0.051) TCGA-CD-A4MI-01 18 44036642 44036642 C - RNF165 3'UTR 0.11 TCGA-CD-A4MI-01 18 45371690 45371690 A G SMAD2 Intron 0.10 TCGA-CD-A4MI-01 18 51731402 51731405 TGTT - MBD2 Frame_Shift_Del p.K222Rfs*17 0.19 TCGA-CD-A4MI-01 18 5434086 5434086 C T EPB41L3 Missense_Mutation p.V214M 0.15 deleterious(0) probably_damaging(0.983) TCGA-CD-A4MI-01 18 56363666 56363666 C T MALT1 Missense_Mutation p.R149W 0.14 tolerated(0.27) benign(0.006) TCGA-CD-A4MI-01 18 5890353 5890353 C T TMEM200C Silent p.A570A 0.17 TCGA-CD-A4MI-01 18 59895753 59895754 - C KIAA1468 Frame_Shift_Ins p.R459Qfs*15 0.10 TCGA-CD-A4MI-01 18 6942091 6942091 C T LAMA1 Missense_Mutation p.G3072E 0.10 deleterious(0) possibly_damaging(0.863) TCGA-CD-A4MI-01 18 76755286 76755286 G T SALL3 Missense_Mutation p.A1099S 0.33 tolerated(0.66) benign(0.04) TCGA-CD-A4MI-01 18 77477647 77477647 G A CTDP1 Silent p.P727P 0.12 TCGA-CD-A4MI-01 18 77664150 77664150 G A PQLC1 Silent p.D214D 0.13 TCGA-CD-A4MI-01 18 8825987 8825987 G A SOGA2 Silent p.S1493S 0.14 TCGA-CD-A4MI-01 19 10787915 10787915 C A ILF3 Missense_Mutation p.P163H 0.17 deleterious(0) probably_damaging(0.994) TCGA-CD-A4MI-01 19 10883278 10883278 T C DNM2 Missense_Mutation p.I120T 0.16 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MI-01 19 11216248 11216248 C T LDLR Silent p.C222C 0.10 TCGA-CD-A4MI-01 19 12298640 12298640 A G ZNF136 Missense_Mutation p.K483E 0.14 deleterious(0.02) probably_damaging(0.996) TCGA-CD-A4MI-01 19 1231045 1231046 - G C19orf26 Frame_Shift_Ins p.S404Ffs*5 0.19 TCGA-CD-A4MI-01 19 12822392 12822392 G A TNPO2 Missense_Mutation p.S309L 0.15 deleterious(0) benign(0.093) TCGA-CD-A4MI-01 19 14161650 14161650 G A IL27RA Missense_Mutation p.A495T 0.15 deleterious(0) probably_damaging(0.99) TCGA-CD-A4MI-01 19 15061128 15061128 C T SLC1A6 Missense_Mutation p.R525Q 0.16 tolerated(0.15) benign(0) TCGA-CD-A4MI-01 19 15290896 15290896 C - NOTCH3 Frame_Shift_Del p.G1105Afs*167 0.23 TCGA-CD-A4MI-01 19 16687986 16687986 C A MED26 Missense_Mutation p.G219C 0.11 tolerated(0.1) benign(0.009) TCGA-CD-A4MI-01 19 18368002 18368002 C T KIAA1683 Nonsense_Mutation p.W1364* 0.17 TCGA-CD-A4MI-01 19 19115314 19115314 G - SUGP2 Frame_Shift_Del p.V865Wfs*26 0.08 TCGA-CD-A4MI-01 19 19609358 19609358 G A GATAD2A Missense_Mutation p.R344Q 0.13 deleterious(0.01) probably_damaging(0.992) TCGA-CD-A4MI-01 19 19747534 19747534 A C GMIP Missense_Mutation p.S437A 0.09 deleterious(0) probably_damaging(0.997) TCGA-CD-A4MI-01 19 21544605 21544605 C A ZNF738 Missense_Mutation p.A14E 0.14 deleterious_low_confidence(0) benign(0.127) TCGA-CD-A4MI-01 19 24289419 24289419 G A ZNF254 Missense_Mutation p.R76Q 0.13 deleterious(0.03) benign(0.048) TCGA-CD-A4MI-01 19 2853027 2853027 A G ZNF555 Missense_Mutation p.S322G 0.19 tolerated(0.11) probably_damaging(0.972) TCGA-CD-A4MI-01 19 3204636 3204636 G T NCLN Missense_Mutation p.E365D 0.09 tolerated(0.46) benign(0.008) TCGA-CD-A4MI-01 19 34263835 34263835 C T CHST8 Missense_Mutation p.A381V 0.12 tolerated(0.12) benign(0.111) TCGA-CD-A4MI-01 19 3586647 3586647 C T GIPC3 Missense_Mutation p.T127M 0.11 deleterious(0) possibly_damaging(0.896) TCGA-CD-A4MI-01 19 35989795 35989795 C - DMKN Frame_Shift_Del p.G455Efs*19 0.15 TCGA-CD-A4MI-01 19 36259552 36259552 C G C19orf55 3'UTR 0.21 TCGA-CD-A4MI-01 19 36279044 36279044 C A ARHGAP33 Missense_Mutation p.P1032T 0.18 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CD-A4MI-01 19 36430878 36430878 C T LRFN3 Missense_Mutation p.T184M 0.09 deleterious(0.01) probably_damaging(0.989) TCGA-CD-A4MI-01 19 36501596 36501596 G T ALKBH6 Intron 0.09 TCGA-CD-A4MI-01 19 3747982 3747982 C G TJP3 Missense_Mutation p.P847R 0.15 tolerated(0.37) benign(0.009) TCGA-CD-A4MI-01 19 3765186 3765186 A - MRPL54 Frame_Shift_Del p.G49Vfs*3 0.25 TCGA-CD-A4MI-01 19 38573489 38573489 G A SIPA1L3 Silent p.P428P 0.17 TCGA-CD-A4MI-01 19 39734753 39734753 C T IFNL3 Silent p.T101T 0.11 TCGA-CD-A4MI-01 19 39847579 39847579 G T SAMD4B Missense_Mutation p.G16C 0.08 deleterious(0) probably_damaging(0.977) TCGA-CD-A4MI-01 19 39868230 39868230 G A SAMD4B Missense_Mutation p.A404T 0.13 tolerated(0.61) benign(0.002) TCGA-CD-A4MI-01 19 40901223 40901223 G A PRX Silent p.A1012A 0.08 TCGA-CD-A4MI-01 19 41066148 41066148 G T SPTBN4 Missense_Mutation p.Q1918H 0.14 tolerated(0.28) benign(0.058) TCGA-CD-A4MI-01 19 41822576 41822576 C T CCDC97 Missense_Mutation p.R112C 0.19 deleterious(0.02) benign(0.01) TCGA-CD-A4MI-01 19 42396360 42396360 A G ARHGEF1 Intron 0.07 TCGA-CD-A4MI-01 19 42584249 42584249 C T ZNF574 Silent p.C497C 0.14 TCGA-CD-A4MI-01 19 42584642 42584642 G T ZNF574 Silent p.V628V 0.05 TCGA-CD-A4MI-01 19 42729572 42729572 G T ZNF526 Missense_Mutation p.K339N 0.09 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MI-01 19 42794850 42794850 G T CIC Nonsense_Mutation p.G644* 0.19 TCGA-CD-A4MI-01 19 42795222 42795222 C A CIC Missense_Mutation p.P768T 0.10 probably_damaging(0.981) TCGA-CD-A4MI-01 19 42801471 42801471 T C PAFAH1B3 Missense_Mutation p.N152S 0.16 deleterious(0) possibly_damaging(0.871) TCGA-CD-A4MI-01 19 42938009 42938009 C A CXCL17 Splice_Site p.X27_splice 0.13 TCGA-CD-A4MI-01 19 43349235 43349235 G T PSG10P RNA 0.07 TCGA-CD-A4MI-01 19 4345956 4345956 C T MPND Missense_Mutation p.T170M 0.09 tolerated(0.47) benign(0.011) TCGA-CD-A4MI-01 19 44947129 44947129 C T ZNF229 5'UTR 0.22 TCGA-CD-A4MI-01 19 45575370 45575370 G A ZNF296 Missense_Mutation p.P306L 0.14 deleterious(0.02) possibly_damaging(0.652) TCGA-CD-A4MI-01 19 45899679 45899679 C T PPP1R13L Missense_Mutation p.R243H 0.10 deleterious(0.03) probably_damaging(0.977) TCGA-CD-A4MI-01 19 46088007 46088007 A C OPA3 Missense_Mutation p.F6V 0.20 deleterious(0) possibly_damaging(0.853) TCGA-CD-A4MI-01 19 46205129 46205129 C T QPCTL Silent p.P320P 0.10 TCGA-CD-A4MI-01 19 46289676 46289676 C T DMWD Missense_Mutation p.V360M 0.09 deleterious(0) probably_damaging(0.963) TCGA-CD-A4MI-01 19 47242056 47242056 C T STRN4 Silent p.A124A 0.10 TCGA-CD-A4MI-01 19 4816266 4816266 C T TICAM1 Silent p.T708T 0.13 TCGA-CD-A4MI-01 19 4818055 4818055 G A TICAM1 Missense_Mutation p.S112L 0.14 tolerated(0.05) benign(0.078) TCGA-CD-A4MI-01 19 48239678 48239678 G T EHD2 Missense_Mutation p.G323V 0.13 deleterious(0) possibly_damaging(0.611) TCGA-CD-A4MI-01 19 49391480 49391480 A G TULP2 Silent p.S225S 0.09 TCGA-CD-A4MI-01 19 49535343 49535344 AG - CGB2 5'UTR 0.11 TCGA-CD-A4MI-01 19 49978938 49978939 - C FLT3LG Intron 0.11 TCGA-CD-A4MI-01 19 50191485 50191485 G A PRMT1 Missense_Mutation p.D367N 0.15 tolerated(0.21) benign(0.001) TCGA-CD-A4MI-01 19 50926143 50926143 C T SPIB Missense_Mutation p.P63L 0.15 tolerated_low_confidence(0.2) benign(0.105) TCGA-CD-A4MI-01 19 51021443 51021443 C T LRRC4B Silent p.T509T 0.20 TCGA-CD-A4MI-01 19 51129177 51129177 G A SYT3 Missense_Mutation p.A460V 0.13 deleterious(0.01) possibly_damaging(0.872) TCGA-CD-A4MI-01 19 51455916 51455916 C T KLK5 5'UTR 0.10 TCGA-CD-A4MI-01 19 52091581 52091581 C T ZNF175 Missense_Mutation p.T666M 0.07 deleterious(0) possibly_damaging(0.798) TCGA-CD-A4MI-01 19 52327888 52327888 G A FPR3 Missense_Mutation p.C296Y 0.10 deleterious(0.03) probably_damaging(0.952) TCGA-CD-A4MI-01 19 52729252 52729252 A G PPP2R1A 3'UTR 0.21 TCGA-CD-A4MI-01 19 53086002 53086002 A - ZNF701 Frame_Shift_Del p.K298Nfs*4 0.21 TCGA-CD-A4MI-01 19 53889597 53889597 G A ZNF525 3'Flank 0.14 TCGA-CD-A4MI-01 19 54206019 54206019 C T MIR518B RNA 0.25 TCGA-CD-A4MI-01 19 54545207 54545207 T C VSTM1 Silent p.R172R 0.17 TCGA-CD-A4MI-01 19 54561722 54561722 C T VSTM1 Missense_Mutation p.D65N 0.12 tolerated(0.13) possibly_damaging(0.718) TCGA-CD-A4MI-01 19 54600445 54600445 G - OSCAR Frame_Shift_Del p.P30Qfs*18 0.19 TCGA-CD-A4MI-01 19 55816953 55816953 C T BRSK1 Missense_Mutation p.S630L 0.10 deleterious(0.02) benign(0.381) TCGA-CD-A4MI-01 19 56109101 56109101 C T FIZ1 Missense_Mutation p.R44Q 0.13 deleterious(0.01) unknown(0) TCGA-CD-A4MI-01 19 56163951 56163951 G A CCDC106 Missense_Mutation p.E228K 0.10 deleterious(0) probably_damaging(0.996) TCGA-CD-A4MI-01 19 56166380 56166380 G A U2AF2 5'Flank 0.23 TCGA-CD-A4MI-01 19 57176405 57176405 G A ZNF835 Silent p.R54R 0.17 TCGA-CD-A4MI-01 19 58565232 58565232 C A ZSCAN1 Missense_Mutation p.P347Q 0.08 tolerated(0.12) possibly_damaging(0.829) TCGA-CD-A4MI-01 19 58574899 58574899 C T ZNF135 Silent p.G94G 0.07 TCGA-CD-A4MI-01 19 58846408 58846408 C T ZSCAN22 Silent p.P80P 0.15 TCGA-CD-A4MI-01 19 58846467 58846467 C T ZSCAN22 Missense_Mutation p.A100V 0.21 tolerated(0.32) benign(0.001) TCGA-CD-A4MI-01 19 58945306 58945306 A G ZNF132 Missense_Mutation p.L502P 0.17 deleterious(0) probably_damaging(1) TCGA-CD-A4MI-01 19 7975353 7975353 G A MAP2K7 Missense_Mutation p.G155R 0.14 tolerated(0.2) probably_damaging(0.995) TCGA-CD-A4MI-01 19 8153044 8153044 G A FBN3 Silent p.V2132V 0.07 TCGA-CD-A4MI-01 19 8367417 8367417 C T CD320 Missense_Mutation p.R260H 0.12 tolerated(0.54) benign(0.004) TCGA-CD-A4MI-01 19 8609255 8609255 G A MYO1F Nonsense_Mutation p.Q484* 0.13 TCGA-CD-A4MI-01 19 8619539 8619539 G A MYO1F Missense_Mutation p.A77V 0.11 deleterious(0.01) probably_damaging(0.948) TCGA-CD-A4MI-01 19 8645851 8645851 G - ADAMTS10 Frame_Shift_Del p.L1080Wfs*100 0.15 TCGA-CD-A4MI-01 19 9071218 9071218 C T MUC16 Missense_Mutation p.A5410T 0.11 unknown(0) TCGA-CD-A4MI-01 19 9362217 9362217 T - OR7E24 Frame_Shift_Del p.F168Lfs*12 0.20 TCGA-CD-A4MI-01 1 100480964 100480964 A G SLC35A3 Silent p.V247V 0.12 TCGA-CD-A4MI-01 1 104114826 104114826 C A AMY2B Missense_Mutation p.S88Y 0.12 deleterious(0) probably_damaging(1) TCGA-CD-A4MI-01 1 10510133 10510133 G A CORT 5'UTR 0.15 TCGA-CD-A4MI-01 1 10511575 10511575 C - CORT Frame_Shift_Del p.Q83Sfs*43 0.29 TCGA-CD-A4MI-01 1 109477274 109477274 G A CLCC1 3'UTR 0.14 TCGA-CD-A4MI-01 1 109756660 109756660 C A SARS Missense_Mutation p.P16T 0.13 deleterious(0) possibly_damaging(0.859) TCGA-CD-A4MI-01 1 110173646 110173646 A G AMPD2 Missense_Mutation p.I838V 0.08 tolerated(0.06) probably_damaging(0.969) TCGA-CD-A4MI-01 1 110459942 110459942 G A CSF1 Missense_Mutation p.A85T 0.10 deleterious(0) probably_damaging(1) TCGA-CD-A4MI-01 1 110561200 110561200 G A AHCYL1 Silent p.T415T 0.13 TCGA-CD-A4MI-01 1 110882873 110882873 C - RBM15 Frame_Shift_Del p.P284Lfs*98 0.11 TCGA-CD-A4MI-01 1 111060821 111060821 C A KCNA10 Missense_Mutation p.D197Y 0.15 deleterious(0) possibly_damaging(0.795) TCGA-CD-A4MI-01 1 112525054 112525054 G A KCND3 Missense_Mutation p.R99C 0.15 deleterious(0) probably_damaging(0.976) TCGA-CD-A4MI-01 1 117146314 117146314 G A IGSF3 Missense_Mutation p.A539V 0.11 tolerated(0.17) benign(0.034) TCGA-CD-A4MI-01 1 117487714 117487714 G T PTGFRN Missense_Mutation p.V278F 0.08 deleterious(0.03) possibly_damaging(0.863) TCGA-CD-A4MI-01 1 117910865 117910865 G A MAN1A2 Silent p.G20G 0.10 TCGA-CD-A4MI-01 1 120301892 120301892 G A HMGCS2 Silent p.T233T 0.09 TCGA-CD-A4MI-01 1 120461946 120461946 C A NOTCH2 Missense_Mutation p.G1924C 0.13 deleterious(0) probably_damaging(1) TCGA-CD-A4MI-01 1 1229825 1229825 G A ACAP3 Missense_Mutation p.A699V 0.29 tolerated(0.33) benign(0.003) TCGA-CD-A4MI-01 1 12337668 12337668 G A VPS13D Silent p.S1341S 0.05 TCGA-CD-A4MI-01 1 12353619 12353619 A G VPS13D Missense_Mutation p.D1964G 0.09 probably_damaging(0.991) TCGA-CD-A4MI-01 1 1248918 1248918 G A CPSF3L Missense_Mutation p.R344W 0.15 deleterious(0) possibly_damaging(0.877) TCGA-CD-A4MI-01 1 1268468 1268468 G T TAS1R3 Missense_Mutation p.E481D 0.08 tolerated(0.28) benign(0) TCGA-CD-A4MI-01 1 12885203 12885203 A T PRAMEF11 Missense_Mutation p.I303N 0.04 deleterious(0) benign(0.354) TCGA-CD-A4MI-01 1 150483519 150483519 C T ECM1 Missense_Mutation p.R212C 0.13 deleterious(0) probably_damaging(0.998) TCGA-CD-A4MI-01 1 150936529 150936529 G A SETDB1 Missense_Mutation p.R1243H 0.10 deleterious(0) probably_damaging(0.998) TCGA-CD-A4MI-01 1 151210663 151210663 G A PIP5K1A Missense_Mutation p.G384D 0.17 deleterious(0.01) probably_damaging(0.987) TCGA-CD-A4MI-01 1 151546755 151546755 A G TUFT1 Missense_Mutation p.S202G 0.11 tolerated(0.11) benign(0.287) TCGA-CD-A4MI-01 1 152187511 152187511 G A HRNR Silent p.H2198H 0.03 TCGA-CD-A4MI-01 1 152733782 152733782 A G KPRP Missense_Mutation p.E573G 0.08 tolerated_low_confidence(1) possibly_damaging(0.607) TCGA-CD-A4MI-01 1 154295464 154295464 A G AQP10 Missense_Mutation p.H80R 0.06 deleterious(0) probably_damaging(0.988) TCGA-CD-A4MI-01 1 154918618 154918618 C T PBXIP1 Missense_Mutation p.R511K 0.14 tolerated(0.19) benign(0.048) TCGA-CD-A4MI-01 1 155005160 155005160 T C DCST2 Missense_Mutation p.D175G 0.12 deleterious(0.03) probably_damaging(0.992) TCGA-CD-A4MI-01 1 155208382 155208382 A G GBA Missense_Mutation p.Y172H 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-CD-A4MI-01 1 155263028 155263028 G A PKLR Missense_Mutation p.A459V 0.13 deleterious(0.02) benign(0.432) TCGA-CD-A4MI-01 1 155736194 155736194 G A GON4L Nonsense_Mutation p.R1024* 0.10 TCGA-CD-A4MI-01 1 155823103 155823103 A - GON4L Frame_Shift_Del p.S157Qfs*17 0.12 TCGA-CD-A4MI-01 1 156046402 156046402 T C MEX3A Missense_Mutation p.H509R 0.15 tolerated(0.2) probably_damaging(0.969) TCGA-CD-A4MI-01 1 156233269 156233269 T C SMG5 Missense_Mutation p.M650V 0.12 tolerated(0.09) benign(0.001) TCGA-CD-A4MI-01 1 156593317 156593317 G A HAPLN2 Missense_Mutation p.R12H 0.13 tolerated(0.61) benign(0) TCGA-CD-A4MI-01 1 156616930 156616930 C T BCAN Silent p.I143I 0.15 TCGA-CD-A4MI-01 1 159900506 159900506 C T IGSF9 Missense_Mutation p.E597K 0.13 deleterious(0) possibly_damaging(0.769) TCGA-CD-A4MI-01 1 160106432 160106432 G A ATP1A2 Missense_Mutation p.R879Q 0.07 tolerated(0.68) benign(0.007) TCGA-CD-A4MI-01 1 160313199 160313199 G - NCSTN Frame_Shift_Del p.G6Vfs*22 0.24 TCGA-CD-A4MI-01 1 160340584 160340584 G A NHLH1 Silent p.S21S 0.10 TCGA-CD-A4MI-01 1 16093879 16093879 C - FBLIM1 Frame_Shift_Del p.P88Lfs*46 0.19 TCGA-CD-A4MI-01 1 161144895 161144895 G A B4GALT3 Missense_Mutation p.A126V 0.11 deleterious(0) probably_damaging(1) TCGA-CD-A4MI-01 1 161495457 161495457 G A HSPA6 Missense_Mutation p.V337I 0.09 deleterious_low_confidence(0) benign(0.258) TCGA-CD-A4MI-01 1 161681172 161681172 C A FCRLA Missense_Mutation p.A159E 0.14 tolerated(0.2) benign(0.12) TCGA-CD-A4MI-01 1 16262530 16262530 T C SPEN Silent p.G3265G 0.12 TCGA-CD-A4MI-01 1 16268477 16268477 G - ZBTB17 Frame_Shift_Del p.P800Rfs*38 0.10 TCGA-CD-A4MI-01 1 16817243 16817243 C T CROCCP3 RNA 0.09 TCGA-CD-A4MI-01 1 169510826 169510827 - G F5 Frame_Shift_Ins p.T1168Hfs*13 0.15 TCGA-CD-A4MI-01 1 17597615 17597615 C T PADI3 Missense_Mutation p.A330V 0.09 deleterious(0.02) probably_damaging(0.951) TCGA-CD-A4MI-01 1 178489957 178489957 A - TEX35 Frame_Shift_Del p.T166Qfs*24 0.18 TCGA-CD-A4MI-01 1 17975156 17975156 G T ARHGEF10L Missense_Mutation p.A794S 0.17 tolerated(0.83) benign(0.001) TCGA-CD-A4MI-01 1 179815697 179815697 G T TOR1AIP2 Missense_Mutation p.L308M 0.14 deleterious(0.03) probably_damaging(1) TCGA-CD-A4MI-01 1 1849798 1849798 G A TMEM52 Silent p.L81L 0.07 TCGA-CD-A4MI-01 1 186269238 186269238 C T PRG4 Missense_Mutation p.A31V 0.13 probably_damaging(0.998) TCGA-CD-A4MI-01 1 196311261 196311262 - A KCNT2 Frame_Shift_Ins p.A501Cfs*2 0.11 TCGA-CD-A4MI-01 1 19632540 19632540 C T AKR7A2 Missense_Mutation p.R297Q 0.22 deleterious(0.03) possibly_damaging(0.736) TCGA-CD-A4MI-01 1 200730172 200730172 T C CAMSAP2 Silent p.T115T 0.12 TCGA-CD-A4MI-01 1 201252855 201252855 G A PKP1 Missense_Mutation p.A9T 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-CD-A4MI-01 1 201778663 201778663 A G NAV1 Missense_Mutation p.K1467E 0.08 deleterious(0.02) possibly_damaging(0.758) TCGA-CD-A4MI-01 1 202914151 202914151 C T ADIPOR1 Missense_Mutation p.V193I 0.14 tolerated(0.1) benign(0.103) TCGA-CD-A4MI-01 1 202917467 202917467 G C ADIPOR1 Missense_Mutation p.H75D 0.09 tolerated(0.13) benign(0.004) TCGA-CD-A4MI-01 1 203186140 203186140 C T CHIT1 Silent p.G426G 0.10 TCGA-CD-A4MI-01 1 204228411 204228411 C - PLEKHA6 Frame_Shift_Del p.V328Yfs*172 0.16 TCGA-CD-A4MI-01 1 205128728 205128728 C T DSTYK Missense_Mutation p.A729T 0.17 deleterious(0) possibly_damaging(0.641) TCGA-CD-A4MI-01 1 205350918 205350918 G A LEMD1 Silent p.C138C 0.14 TCGA-CD-A4MI-01 1 207850873 207850873 A - CR1L Frame_Shift_Del p.N81Tfs*23 0.16 TCGA-CD-A4MI-01 1 207925557 207925557 C A CD46 5'UTR 0.03 TCGA-CD-A4MI-01 1 21048358 21048358 G - SH2D5 Frame_Shift_Del p.P400Qfs*27 0.19 TCGA-CD-A4MI-01 1 214813825 214813825 A G CENPF Missense_Mutation p.Q715R 0.20 benign(0.002) TCGA-CD-A4MI-01 1 21562343 21562343 G A ECE1 Silent p.D522D 0.14 TCGA-CD-A4MI-01 1 218520038 218520038 T A TGFB2 5'UTR 0.12 TCGA-CD-A4MI-01 1 21926004 21926004 C T RAP1GAP Missense_Mutation p.G651R 0.15 tolerated(0.13) benign(0.154) TCGA-CD-A4MI-01 1 220953575 220953575 T C MARC2 Missense_Mutation p.L293P 0.11 deleterious(0) probably_damaging(1) TCGA-CD-A4MI-01 1 22173013 22173013 G A HSPG2 Silent p.C2748C 0.15 TCGA-CD-A4MI-01 1 223177842 223177842 A G DISP1 Missense_Mutation p.N1035D 0.14 deleterious(0.01) probably_damaging(0.989) TCGA-CD-A4MI-01 1 223177922 223177922 C T DISP1 Silent p.R1061R 0.18 TCGA-CD-A4MI-01 1 224804847 224804848 - GT CNIH3 5'UTR 0.10 TCGA-CD-A4MI-01 1 226568810 226568810 G A PARP1 Missense_Mutation p.T420M 0.15 tolerated(0.06) benign(0.322) TCGA-CD-A4MI-01 1 226924476 226924476 C T ITPKB Silent p.S228S 0.14 TCGA-CD-A4MI-01 1 227152742 227152742 C T ADCK3 Silent p.G73G 0.14 TCGA-CD-A4MI-01 1 228444410 228444410 G - OBSCN Frame_Shift_Del p.A1550Pfs*16 0.26 TCGA-CD-A4MI-01 1 228470812 228470812 C T OBSCN Missense_Mutation p.T3284M 0.31 probably_damaging(0.937) TCGA-CD-A4MI-01 1 229787056 229787056 G A URB2 Silent p.R1408R 0.14 TCGA-CD-A4MI-01 1 231474173 231474173 G T SPRTN Missense_Mutation p.W15L 0.10 deleterious(0.02) benign(0.228) TCGA-CD-A4MI-01 1 233397843 233397843 C T PCNXL2 Missense_Mutation p.R143H 0.16 tolerated(0.53) benign(0) TCGA-CD-A4MI-01 1 234444860 234444860 T - SLC35F3 Frame_Shift_Del p.F209Lfs*6 0.14 TCGA-CD-A4MI-01 1 235866168 235866168 G A LYST Missense_Mutation p.A3418V 0.16 deleterious(0) probably_damaging(0.962) TCGA-CD-A4MI-01 1 235969716 235969716 A - LYST Frame_Shift_Del p.L907Yfs*3 0.17 TCGA-CD-A4MI-01 1 237777706 237777706 C T RYR2 Missense_Mutation p.R1760W 0.09 probably_damaging(0.919) TCGA-CD-A4MI-01 1 240071274 240071274 A G CHRM3 Missense_Mutation p.T175A 0.19 deleterious(0) possibly_damaging(0.814) TCGA-CD-A4MI-01 1 240256612 240256612 C T FMN2 Silent p.P401P 0.18 TCGA-CD-A4MI-01 1 24119502 24119502 T - LYPLA2 Frame_Shift_Del p.L30Yfs*35 0.19 TCGA-CD-A4MI-01 1 241797002 241797002 C T CHML 3'UTR 0.14 TCGA-CD-A4MI-01 1 247588581 247588581 T C NLRP3 Silent p.I612I 0.12 TCGA-CD-A4MI-01 1 247695192 247695193 - A OR2C3 Frame_Shift_Ins p.V208Cfs*63 0.09 TCGA-CD-A4MI-01 1 248737350 248737350 C T OR2T34 Missense_Mutation p.A237T 0.11 deleterious(0.02) benign(0.002) TCGA-CD-A4MI-01 1 26152890 26152890 A G MTFR1L Missense_Mutation p.Y76C 0.16 deleterious(0.01) probably_damaging(0.995) TCGA-CD-A4MI-01 1 26189692 26189692 G T PAQR7 Silent p.A213A 0.08 TCGA-CD-A4MI-01 1 27117357 27117357 C T PIGV Silent p.S17S 0.19 TCGA-CD-A4MI-01 1 27240396 27240396 C T NR0B2 Silent p.Q12Q 0.16 TCGA-CD-A4MI-01 1 27277975 27277975 G A C1orf172 Silent p.R299R 0.19 TCGA-CD-A4MI-01 1 29522757 29522757 T C MECR Missense_Mutation p.M282V 0.17 tolerated(0.11) benign(0.03) TCGA-CD-A4MI-01 1 34011768 34011768 C T CSMD2 Missense_Mutation p.R2846H 0.08 deleterious(0.03) benign(0.135) TCGA-CD-A4MI-01 1 36359342 36359342 C T AGO1 Missense_Mutation p.R194C 0.09 deleterious(0.03) probably_damaging(0.967) TCGA-CD-A4MI-01 1 39753194 39753194 G A MACF1 Missense_Mutation p.R587Q 0.15 benign(0.131) TCGA-CD-A4MI-01 1 40881993 40881993 C T SMAP2 Missense_Mutation p.T276M 0.15 deleterious(0) possibly_damaging(0.474) TCGA-CD-A4MI-01 1 43773592 43773592 T C TIE1 Missense_Mutation p.S347P 0.10 tolerated(0.12) benign(0.009) TCGA-CD-A4MI-01 1 44118953 44118953 C T KDM4A Missense_Mutation p.S36F 0.16 deleterious(0) probably_damaging(1) TCGA-CD-A4MI-01 1 45808537 45808537 C T TOE1 Missense_Mutation p.R259W 0.11 tolerated(0.05) benign(0.035) TCGA-CD-A4MI-01 1 46739833 46739833 G A RAD54L Missense_Mutation p.G545D 0.17 deleterious(0.01) probably_damaging(1) TCGA-CD-A4MI-01 1 46740228 46740228 A G RAD54L Missense_Mutation p.M570V 0.15 deleterious(0) probably_damaging(0.924) TCGA-CD-A4MI-01 1 47400814 47400814 G T CYP4A11 Silent p.S216S 0.10 TCGA-CD-A4MI-01 1 52254957 52254957 G A NRD1 Missense_Mutation p.A1204V 0.14 tolerated(0.11) benign(0.055) TCGA-CD-A4MI-01 1 52498938 52498938 C T KTI12 Missense_Mutation p.A166T 0.13 tolerated(0.66) benign(0.003) TCGA-CD-A4MI-01 1 53715091 53715091 C T LRP8 Silent p.P938P 0.10 TCGA-CD-A4MI-01 1 54428072 54428072 G T LRRC42 Missense_Mutation p.W306L 0.06 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MI-01 1 6304439 6304439 G A HES3 Missense_Mutation p.R5H 0.11 deleterious(0.03) probably_damaging(1) TCGA-CD-A4MI-01 1 64516359 64516359 C - ROR1 Frame_Shift_Del p.P153Lfs*46 0.15 TCGA-CD-A4MI-01 1 6640765 6640765 G - ZBTB48 Frame_Shift_Del p.G34Afs*75 0.22 TCGA-CD-A4MI-01 1 68947796 68947796 G A DEPDC1 Silent p.C565C 0.10 TCGA-CD-A4MI-01 1 75055401 75055401 T G C1orf173 Missense_Mutation p.K697T 0.12 deleterious(0) probably_damaging(0.928) TCGA-CD-A4MI-01 1 77635038 77635038 A G PIGK Silent p.P94P 0.14 TCGA-CD-A4MI-01 1 7797391 7797391 C A CAMTA1 Missense_Mutation p.P1140H 0.13 deleterious(0.01) possibly_damaging(0.907) TCGA-CD-A4MI-01 1 7910965 7910965 G A UTS2 Missense_Mutation p.R56C 0.05 deleterious(0) possibly_damaging(0.742) TCGA-CD-A4MI-01 1 82447517 82447518 - T LPHN2 Frame_Shift_Ins p.L1031Sfs*16 0.11 TCGA-CD-A4MI-01 1 85725277 85725277 C T C1orf52 Missense_Mutation p.A14T 0.24 deleterious(0.01) possibly_damaging(0.506) TCGA-CD-A4MI-01 1 89325946 89325946 G A GTF2B Silent p.D94D 0.11 TCGA-CD-A4MI-01 1 89408751 89408751 T C CCBL2 Silent p.S413S 0.11 TCGA-CD-A4MI-01 1 91977476 91977476 A - CDC7 Frame_Shift_Del p.K191Sfs*5 0.12 TCGA-CD-A4MI-01 1 92161320 92161320 C A TGFBR3 Silent p.L782L 0.16 TCGA-CD-A4MI-01 1 9305527 9305527 T C H6PD Silent p.H178H 0.13 TCGA-CD-A4MI-01 1 93583921 93583921 C T MTF2 Nonsense_Mutation p.Q218* 0.11 TCGA-CD-A4MI-01 1 93659237 93659237 G A CCDC18 Missense_Mutation p.E266K 0.14 tolerated(0.98) benign(0.002) TCGA-CD-A4MI-01 1 94466610 94466610 C T ABCA4 Missense_Mutation p.V2112I 0.08 deleterious(0.04) benign(0.001) TCGA-CD-A4MI-01 1 97771791 97771791 A - DPYD Frame_Shift_Del p.F707Lfs*4 0.14 TCGA-CD-A4MI-01 20 10280034 10280034 C T SNAP25 Missense_Mutation p.R176C 0.12 deleterious(0.01) possibly_damaging(0.823) TCGA-CD-A4MI-01 20 1615967 1615967 G T SIRPG Missense_Mutation p.L343I 0.11 tolerated(0.4) benign(0.01) TCGA-CD-A4MI-01 20 21328891 21328891 G A XRN2 Silent p.P591P 0.15 TCGA-CD-A4MI-01 20 21494212 21494212 C T NKX2-2 Silent p.P32P 0.13 TCGA-CD-A4MI-01 20 32349702 32349702 T C ZNF341 Missense_Mutation p.C348R 0.14 deleterious(0) probably_damaging(1) TCGA-CD-A4MI-01 20 33345657 33345657 C T NCOA6 Silent p.Q298Q 0.22 TCGA-CD-A4MI-01 20 33450619 33450619 G A GGT7 Silent p.G185G 0.18 TCGA-CD-A4MI-01 20 33509227 33509227 C T ACSS2 Missense_Mutation p.R471C 0.17 deleterious(0) benign(0.011) TCGA-CD-A4MI-01 20 34025642 34025642 A G GDF5 Missense_Mutation p.C23R 0.11 tolerated_low_confidence(0.18) benign(0.002) TCGA-CD-A4MI-01 20 34785881 34785881 A T EPB41L1 Missense_Mutation p.D529V 0.10 deleterious(0) possibly_damaging(0.83) TCGA-CD-A4MI-01 20 35064573 35064573 C T DLGAP4 Missense_Mutation p.A354V 0.12 tolerated(0.18) benign(0.031) TCGA-CD-A4MI-01 20 35632262 35632262 G T RBL1 Missense_Mutation p.A960D 0.15 deleterious(0.01) possibly_damaging(0.888) TCGA-CD-A4MI-01 20 3652954 3652954 C T ADAM33 Missense_Mutation p.C475Y 0.13 deleterious(0) probably_damaging(0.992) TCGA-CD-A4MI-01 20 37581229 37581229 A - FAM83D 3'UTR 0.12 TCGA-CD-A4MI-01 20 39317104 39317104 G A MAFB Silent p.G129G 0.25 TCGA-CD-A4MI-01 20 42161464 42161464 C T L3MBTL1 Missense_Mutation p.R424C 0.19 deleterious(0) probably_damaging(0.98) TCGA-CD-A4MI-01 20 42328520 42328520 G A MYBL2 Missense_Mutation p.A263T 0.13 tolerated(0.41) benign(0.002) TCGA-CD-A4MI-01 20 43378878 43378878 G A KCNK15 Missense_Mutation p.R131Q 0.20 deleterious(0) probably_damaging(0.983) TCGA-CD-A4MI-01 20 43927136 43927136 A G MATN4 Missense_Mutation p.F367S 0.25 probably_damaging(0.994) TCGA-CD-A4MI-01 20 44596525 44596525 G - ZNF335 Frame_Shift_Del p.P221Qfs*16 0.08 TCGA-CD-A4MI-01 20 44845508 44845508 G A CDH22 Silent p.I265I 0.26 TCGA-CD-A4MI-01 20 47850160 47850160 G A DDX27 Missense_Mutation p.S427N 0.10 tolerated(0.3) benign(0.298) TCGA-CD-A4MI-01 20 49508535 49508535 C T ADNP Missense_Mutation p.D906N 0.14 tolerated_low_confidence(0.19) benign(0.001) TCGA-CD-A4MI-01 20 50418891 50418891 G A SALL4 Silent p.G19G 0.11 TCGA-CD-A4MI-01 20 56099127 56099127 A C CTCFL Missense_Mutation p.S45R 0.24 tolerated(0.41) benign(0.002) TCGA-CD-A4MI-01 20 56227286 56227286 C T PMEPA1 Silent p.P229P 0.09 TCGA-CD-A4MI-01 20 57768587 57768587 C A ZNF831 Missense_Mutation p.P838H 0.09 tolerated(0.22) possibly_damaging(0.819) TCGA-CD-A4MI-01 20 60511828 60511828 C - CDH4 Frame_Shift_Del p.Y862Mfs*22 0.09 TCGA-CD-A4MI-01 20 60886128 60886128 G T LAMA5 Missense_Mutation p.L3371I 0.10 possibly_damaging(0.73) TCGA-CD-A4MI-01 20 61950424 61950424 C - COL20A1 Frame_Shift_Del p.L895Yfs*27 0.22 TCGA-CD-A4MI-01 20 61981147 61981147 G A CHRNA4 Missense_Mutation p.S539L 0.13 tolerated(0.37) benign(0.001) TCGA-CD-A4MI-01 20 62679699 62679699 G A SOX18 Silent p.T325T 0.21 TCGA-CD-A4MI-01 21 15889305 15889305 C A SAMSN1 Nonsense_Mutation p.G131* 0.25 TCGA-CD-A4MI-01 21 22370876 22370876 C T NCAM2 5'UTR 0.09 TCGA-CD-A4MI-01 21 28210316 28210316 C T ADAMTS1 Missense_Mutation p.G829D 0.15 deleterious(0) probably_damaging(1) TCGA-CD-A4MI-01 21 30341860 30341860 A - LTN1 Frame_Shift_Del p.F459Lfs*7 0.14 TCGA-CD-A4MI-01 21 32492843 32492843 C T TIAM1 Missense_Mutation p.R1540Q 0.12 tolerated(0.48) benign(0) TCGA-CD-A4MI-01 21 33340634 33340634 C T HUNK Missense_Mutation p.A316V 0.13 deleterious(0.03) probably_damaging(0.981) TCGA-CD-A4MI-01 21 35467872 35467872 T - SLC5A3 Frame_Shift_Del p.F126Lfs*6 0.12 TCGA-CD-A4MI-01 21 36421237 36421237 A G RUNX1 5'UTR 0.12 TCGA-CD-A4MI-01 21 40186743 40186743 C T ETS2 Missense_Mutation p.L115F 0.06 deleterious(0.01) probably_damaging(1) TCGA-CD-A4MI-01 21 41385177 41385177 C T DSCAM Silent p.T1941T 0.17 TCGA-CD-A4MI-01 21 41414420 41414420 G A DSCAM Missense_Mutation p.T1855M 0.12 deleterious(0) probably_damaging(0.932) TCGA-CD-A4MI-01 21 43161767 43161767 G A RIPK4 Missense_Mutation p.S529L 0.26 tolerated(0.29) benign(0.016) TCGA-CD-A4MI-01 21 43412134 43412134 T - ZBTB21 Frame_Shift_Del p.M691Cfs*10 0.17 TCGA-CD-A4MI-01 21 43412172 43412172 G A ZBTB21 Missense_Mutation p.A678V 0.09 tolerated(0.8) benign(0.082) TCGA-CD-A4MI-01 21 45110242 45110242 C - RRP1B Frame_Shift_Del p.F649Sfs*26 0.10 TCGA-CD-A4MI-01 21 45811232 45811232 C T TRPM2 Silent p.N506N 0.11 TCGA-CD-A4MI-01 21 46047482 46047482 G A KRTAP10-9 Missense_Mutation p.A132T 0.10 tolerated(1) unknown(0) TCGA-CD-A4MI-01 21 47401840 47401840 C A COL6A1 Missense_Mutation p.P26T 0.11 tolerated(0.48) unknown(0) TCGA-CD-A4MI-01 21 47531946 47531946 G A COL6A2 Missense_Mutation p.V57I 0.17 tolerated(0.97) benign(0.017) TCGA-CD-A4MI-01 21 47549264 47549264 C T COL6A2 Intron 0.14 TCGA-CD-A4MI-01 21 47987341 47987341 C T DIP2A Nonsense_Mutation p.Q1508* 0.14 TCGA-CD-A4MI-01 22 17488852 17488852 G - GAB4 Frame_Shift_Del p.E52Rfs*4 0.13 TCGA-CD-A4MI-01 22 19119328 19119328 G A TSSK2 Missense_Mutation p.C139Y 0.17 deleterious(0) probably_damaging(0.998) TCGA-CD-A4MI-01 22 19340920 19340920 C T HIRA Missense_Mutation p.R936H 0.16 tolerated(0.18) benign(0.141) TCGA-CD-A4MI-01 22 19492925 19492925 G A CDC45 Missense_Mutation p.V281I 0.12 deleterious(0.01) benign(0.216) TCGA-CD-A4MI-01 22 19808148 19808148 G A GNB1L Missense_Mutation p.T76M 0.19 tolerated(0.13) benign(0.026) TCGA-CD-A4MI-01 22 19956195 19956195 G T COMT Missense_Mutation p.R251M 0.10 tolerated(0.36) benign(0.002) TCGA-CD-A4MI-01 22 20127121 20127121 G A ZDHHC8 Missense_Mutation p.R116H 0.10 deleterious(0) probably_damaging(0.998) TCGA-CD-A4MI-01 22 20920849 20920849 G T MED15 Missense_Mutation p.Q262H 0.20 tolerated_low_confidence(0.05) unknown(0) TCGA-CD-A4MI-01 22 21799216 21799216 G A HIC2 Missense_Mutation p.C11Y 0.11 tolerated_low_confidence(0.32) benign(0.384) TCGA-CD-A4MI-01 22 21991051 21991052 - C CCDC116 Frame_Shift_Ins p.R513Pfs*72 0.11 TCGA-CD-A4MI-01 22 24167550 24167550 G A SMARCB1 Missense_Mutation p.A312T 0.15 deleterious(0) possibly_damaging(0.775) TCGA-CD-A4MI-01 22 29440829 29440829 T C ZNRF3 Missense_Mutation p.V232A 0.10 deleterious(0.04) benign(0.109) TCGA-CD-A4MI-01 22 29621187 29621187 C T EMID1 Missense_Mutation p.R129W 0.15 deleterious(0) possibly_damaging(0.888) TCGA-CD-A4MI-01 22 29706822 29706822 C T GAS2L1 Missense_Mutation p.R282C 0.11 tolerated(0.1) possibly_damaging(0.708) TCGA-CD-A4MI-01 22 30766894 30766894 C T CCDC157 Nonsense_Mutation p.Q334* 0.23 TCGA-CD-A4MI-01 22 30857641 30857641 C T SEC14L3 Missense_Mutation p.R271Q 0.15 tolerated(0.31) benign(0) TCGA-CD-A4MI-01 22 31059662 31059662 C T DUSP18 Missense_Mutation p.R110H 0.18 deleterious(0.05) possibly_damaging(0.708) TCGA-CD-A4MI-01 22 31324132 31324132 A G MORC2 Silent p.R906R 0.10 TCGA-CD-A4MI-01 22 32000924 32000924 C T SFI1 Silent p.L683L 0.10 TCGA-CD-A4MI-01 22 32302556 32302556 C T DEPDC5 3'UTR 0.16 TCGA-CD-A4MI-01 22 35743188 35743188 C T TOM1 Silent p.L490L 0.19 TCGA-CD-A4MI-01 22 36700098 36700098 T G MYH9 Missense_Mutation p.K778T 0.11 probably_damaging(0.999) TCGA-CD-A4MI-01 22 39145777 39145777 A - SUN2 Frame_Shift_Del p.L224* 0.23 TCGA-CD-A4MI-01 22 39418942 39418942 C T APOBEC3D Missense_Mutation p.R45C 0.14 tolerated(0.1) benign(0.001) TCGA-CD-A4MI-01 22 39909948 39909948 C T MIEF1 Missense_Mutation p.R338W 0.11 deleterious(0.03) benign(0.27) TCGA-CD-A4MI-01 22 40801789 40801789 G A SGSM3 Missense_Mutation p.R252H 0.12 deleterious(0.03) benign(0.299) TCGA-CD-A4MI-01 22 41360110 41360110 G T RBX1 Nonsense_Mutation p.G73* 0.11 TCGA-CD-A4MI-01 22 41625570 41625570 C T L3MBTL2 Nonsense_Mutation p.R639* 0.12 TCGA-CD-A4MI-01 22 41832766 41832766 C - TOB2 Frame_Shift_Del p.G195Afs*9 0.16 TCGA-CD-A4MI-01 22 41982188 41982188 G A PMM1 Missense_Mutation p.P33S 0.07 tolerated(0.05) benign(0.021) TCGA-CD-A4MI-01 22 42289201 42289201 C - SREBF2 Frame_Shift_Del p.L765Wfs*13 0.16 TCGA-CD-A4MI-01 22 42383721 42383721 G A SEPT3 Missense_Mutation p.R170H 0.13 deleterious(0) probably_damaging(0.91) TCGA-CD-A4MI-01 22 45765891 45765891 T - SMC1B Frame_Shift_Del p.N788Ifs*21 0.12 TCGA-CD-A4MI-01 22 45923783 45923783 C T FBLN1 Silent p.C126C 0.13 TCGA-CD-A4MI-01 22 46657387 46657387 T C PKDREJ Silent p.S611S 0.20 TCGA-CD-A4MI-01 22 46681140 46681140 C T TTC38 Silent p.G266G 0.10 TCGA-CD-A4MI-01 22 46760471 46760471 G - CELSR1 Frame_Shift_Del p.P2906Rfs*24 0.12 TCGA-CD-A4MI-01 22 46773080 46773080 C T CELSR1 Missense_Mutation p.V2488I 0.14 tolerated(0.62) benign(0.014) TCGA-CD-A4MI-01 22 50217527 50217527 C T BRD1 Missense_Mutation p.A147T 0.11 tolerated(0.37) benign(0.013) TCGA-CD-A4MI-01 22 50553619 50553620 - G MOV10L1 Frame_Shift_Ins p.L404Afs*15 0.12 TCGA-CD-A4MI-01 22 50755772 50755772 A G DENND6B Missense_Mutation p.Y135H 0.11 tolerated(0.11) benign(0.302) TCGA-CD-A4MI-01 22 50928041 50928041 C T MIOX Silent p.D239D 0.18 TCGA-CD-A4MI-01 2 100079006 100079006 A G REV1 Missense_Mutation p.S45P 0.18 tolerated(0.07) benign(0.042) TCGA-CD-A4MI-01 2 112940399 112940399 G - FBLN7 Frame_Shift_Del p.R236Afs*10 0.14 TCGA-CD-A4MI-01 2 113147664 113147664 C T RGPD8 Missense_Mutation p.G953D 0.10 tolerated(0.39) benign(0.007) TCGA-CD-A4MI-01 2 11706632 11706632 C T GREB1 Missense_Mutation p.R102C 0.17 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MI-01 2 11802192 11802192 C T NTSR2 Missense_Mutation p.V267I 0.13 tolerated(0.07) benign(0.104) TCGA-CD-A4MI-01 2 118854319 118854319 A T INSIG2 Missense_Mutation p.I63F 0.07 deleterious(0.01) possibly_damaging(0.543) TCGA-CD-A4MI-01 2 121036293 121036293 T C RALB Missense_Mutation p.I18T 0.15 deleterious(0) probably_damaging(0.998) TCGA-CD-A4MI-01 2 128631753 128631753 C T AMMECR1L Missense_Mutation p.C19Y 0.13 deleterious(0.02) probably_damaging(0.999) TCGA-CD-A4MI-01 2 130931147 130931147 C T SMPD4 Missense_Mutation p.C109Y 0.11 tolerated(0.56) probably_damaging(0.919) TCGA-CD-A4MI-01 2 130951399 130951399 C T TUBA3E Missense_Mutation p.R339H 0.13 tolerated_low_confidence(0.05) benign(0.155) TCGA-CD-A4MI-01 2 130951771 130951771 C T TUBA3E Missense_Mutation p.R215H 0.11 tolerated_low_confidence(0.07) benign(0.057) TCGA-CD-A4MI-01 2 133540780 133540780 T C NCKAP5 Missense_Mutation p.T1202A 0.12 tolerated(0.2) benign(0.009) TCGA-CD-A4MI-01 2 133541060 133541060 A G NCKAP5 Silent p.N1108N 0.13 TCGA-CD-A4MI-01 2 133542959 133542959 G A NCKAP5 Silent p.H475H 0.15 TCGA-CD-A4MI-01 2 136399316 136399316 C T R3HDM1 Missense_Mutation p.A477V 0.08 deleterious(0.04) possibly_damaging(0.578) TCGA-CD-A4MI-01 2 141232708 141232708 T G LRP1B Missense_Mutation p.K3208N 0.22 benign(0.403) TCGA-CD-A4MI-01 2 148684693 148684693 C T ACVR2A Silent p.H464H 0.07 TCGA-CD-A4MI-01 2 1491615 1491615 A G TPO Silent p.R540R 0.11 TCGA-CD-A4MI-01 2 149216410 149216410 G A MBD5 Missense_Mutation p.R28H 0.12 deleterious(0.01) possibly_damaging(0.715) TCGA-CD-A4MI-01 2 170460581 170460581 T - PPIG Frame_Shift_Del p.F12Lfs*115 0.13 TCGA-CD-A4MI-01 2 176948411 176948411 C T EVX2 Missense_Mutation p.A32T 0.23 deleterious(0.02) benign(0.184) TCGA-CD-A4MI-01 2 177036309 177036309 G A HOXD3 Silent p.T202T 0.08 TCGA-CD-A4MI-01 2 179419291 179419291 T C TTN Missense_Mutation p.T29595A 0.16 TCGA-CD-A4MI-01 2 179458930 179458930 G A TTN Missense_Mutation p.T19397M 0.08 TCGA-CD-A4MI-01 2 179466064 179466064 G A TTN Nonsense_Mutation p.R18554* 0.14 TCGA-CD-A4MI-01 2 179500810 179500810 C T TTN Missense_Mutation p.V13830I 0.14 TCGA-CD-A4MI-01 2 179585805 179585805 G A TTN Silent p.S7647S 0.10 TCGA-CD-A4MI-01 2 179586853 179586853 T C TTN Missense_Mutation p.K7513E 0.12 TCGA-CD-A4MI-01 2 179644669 179644669 A - TTN Intron 0.22 TCGA-CD-A4MI-01 2 191554976 191554976 C A NAB1 Missense_Mutation p.L461I 0.07 tolerated_low_confidence(0.48) benign(0.039) TCGA-CD-A4MI-01 2 192700903 192700903 G A SDPR Missense_Mutation p.L342F 0.11 tolerated(0.7) benign(0.016) TCGA-CD-A4MI-01 2 198949135 198949135 G A PLCL1 Silent p.V298V 0.13 TCGA-CD-A4MI-01 2 202131490 202131490 G A CASP8 Missense_Mutation p.G153D 0.07 tolerated(0.08) benign(0.311) TCGA-CD-A4MI-01 2 204320201 204320201 G A RAPH1 Nonsense_Mutation p.R421* 0.11 TCGA-CD-A4MI-01 2 210905211 210905212 - T KANSL1L Frame_Shift_Ins p.T655Dfs*2 0.15 TCGA-CD-A4MI-01 2 211018374 211018375 - T KANSL1L Frame_Shift_Ins p.N311Kfs*26 0.12 TCGA-CD-A4MI-01 2 212530068 212530068 G A ERBB4 Silent p.C617C 0.10 TCGA-CD-A4MI-01 2 215843156 215843156 T - ABCA12 Frame_Shift_Del p.N1671Ifs*4 0.31 TCGA-CD-A4MI-01 2 215855743 215855743 T C ABCA12 Missense_Mutation p.M1103V 0.11 deleterious(0) benign(0.151) TCGA-CD-A4MI-01 2 217542917 217542917 T G IGFBP5 Missense_Mutation p.E202A 0.15 tolerated(0.48) benign(0.173) TCGA-CD-A4MI-01 2 218712867 218712867 C T TNS1 Silent p.Q666Q 0.08 TCGA-CD-A4MI-01 2 218713028 218713028 G T TNS1 Missense_Mutation p.P613T 0.07 tolerated(0.11) benign(0.06) TCGA-CD-A4MI-01 2 219029293 219029293 C T CXCR1 Silent p.P214P 0.11 TCGA-CD-A4MI-01 2 219339558 219339558 T C USP37 Silent p.S698S 0.13 TCGA-CD-A4MI-01 2 219696472 219696472 C T PRKAG3 Missense_Mutation p.A8T 0.17 tolerated_low_confidence(0.78) benign(0.001) TCGA-CD-A4MI-01 2 220349218 220349218 C A SPEG Missense_Mutation p.L2345M 0.19 probably_damaging(0.998) TCGA-CD-A4MI-01 2 220419260 220419260 G T OBSL1 Silent p.A1604A 0.20 TCGA-CD-A4MI-01 2 220504357 220504357 G A SLC4A3 Silent p.A1086A 0.11 TCGA-CD-A4MI-01 2 222365753 222365753 G T EPHA4 Silent p.A321A 0.10 TCGA-CD-A4MI-01 2 223795419 223795419 A - ACSL3 Frame_Shift_Del p.N542Mfs*33 0.10 TCGA-CD-A4MI-01 2 227914822 227914822 G - COL4A4 Frame_Shift_Del p.P1059Lfs*82 0.12 TCGA-CD-A4MI-01 2 230654380 230654380 G T TRIP12 Missense_Mutation p.L1473I 0.14 tolerated(0.41) benign(0.002) TCGA-CD-A4MI-01 2 231041383 231041383 A G SP110 Intron 0.17 TCGA-CD-A4MI-01 2 231124 231124 C T SH3YL1 Missense_Mutation p.E201K 0.16 tolerated(0.1) benign(0.014) TCGA-CD-A4MI-01 2 233393579 233393579 A G CHRND Missense_Mutation p.K173E 0.08 deleterious(0.02) benign(0.139) TCGA-CD-A4MI-01 2 234203 234203 T C SH3YL1 Missense_Mutation p.T121A 0.09 deleterious(0) possibly_damaging(0.725) TCGA-CD-A4MI-01 2 234622039 234622039 T C UGT1A5 Silent p.N134N 0.14 TCGA-CD-A4MI-01 2 234681161 234681161 A G UGT1A4 Missense_Mutation p.K521E 0.11 deleterious(0.02) benign(0.434) TCGA-CD-A4MI-01 2 237074893 237074893 G A GBX2 Silent p.A237A 0.16 TCGA-CD-A4MI-01 2 237246962 237246962 G A IQCA1 Missense_Mutation p.R674W 0.10 deleterious(0) probably_damaging(1) TCGA-CD-A4MI-01 2 241439490 241439490 G A ANKMY1 Silent p.R808R 0.13 TCGA-CD-A4MI-01 2 241808357 241808357 G T AGXT Silent p.L25L 0.14 TCGA-CD-A4MI-01 2 25180758 25180758 G A DNAJC27 Missense_Mutation p.A109V 0.14 tolerated(0.3) benign(0.01) TCGA-CD-A4MI-01 2 27322109 27322109 G A KHK Missense_Mutation p.A204T 0.09 deleterious(0.03) possibly_damaging(0.757) TCGA-CD-A4MI-01 2 28627104 28627104 G A FOSL2 Missense_Mutation p.R78H 0.10 deleterious(0.01) probably_damaging(0.976) TCGA-CD-A4MI-01 2 29225501 29225501 C T FAM179A Missense_Mutation p.P176L 0.12 deleterious(0) probably_damaging(0.931) TCGA-CD-A4MI-01 2 29455289 29455290 - G ALK Frame_Shift_Ins p.L838Pfs*27 0.14 TCGA-CD-A4MI-01 2 31489577 31489577 G - EHD3 3'UTR 0.17 TCGA-CD-A4MI-01 2 32517418 32517418 G A YIPF4 Splice_Site p.X135_splice 0.09 TCGA-CD-A4MI-01 2 33359778 33359778 T - LTBP1 Intron 0.13 TCGA-CD-A4MI-01 2 33824291 33824291 T C FAM98A 5'UTR 0.14 TCGA-CD-A4MI-01 2 37310522 37310522 T C HEATR5B Silent p.E12E 0.14 TCGA-CD-A4MI-01 2 39988502 39988502 G A THUMPD2 Missense_Mutation p.A287V 0.11 deleterious(0) probably_damaging(1) TCGA-CD-A4MI-01 2 40656816 40656816 C T SLC8A1 Missense_Mutation p.R202H 0.10 deleterious(0) probably_damaging(0.996) TCGA-CD-A4MI-01 2 42490379 42490379 C T EML4 Missense_Mutation p.R192C 0.31 deleterious(0.03) benign(0.012) TCGA-CD-A4MI-01 2 45826872 45826872 C T SRBD1 Missense_Mutation p.A122T 0.15 tolerated_low_confidence(0.45) benign(0.002) TCGA-CD-A4MI-01 2 46234620 46234620 C T PRKCE Silent p.N361N 0.19 TCGA-CD-A4MI-01 2 46378289 46378289 A G PRKCE Missense_Mutation p.D614G 0.14 deleterious(0) probably_damaging(0.997) TCGA-CD-A4MI-01 2 46846809 46846809 A - CRIPT Frame_Shift_Del p.A45Qfs*86 0.12 TCGA-CD-A4MI-01 2 48602066 48602066 G T FOXN2 Missense_Mutation p.K260N 0.12 tolerated(0.09) benign(0.005) TCGA-CD-A4MI-01 2 53927512 53927512 A G ASB3 Silent p.Y413Y 0.10 TCGA-CD-A4MI-01 2 55467153 55467153 G T MTIF2 Missense_Mutation p.P622T 0.21 tolerated(0.41) benign(0) TCGA-CD-A4MI-01 2 55470699 55470699 C T MTIF2 Missense_Mutation p.A473T 0.12 tolerated(0.41) benign(0.048) TCGA-CD-A4MI-01 2 669841 669841 C T TMEM18 Silent p.S81S 0.19 TCGA-CD-A4MI-01 2 69092787 69092787 G A BMP10 Silent p.A417A 0.19 TCGA-CD-A4MI-01 2 70402810 70402811 - T C2orf42 Frame_Shift_Ins p.R345Kfs*10 0.14 TCGA-CD-A4MI-01 2 73675218 73675218 G A ALMS1 Missense_Mutation p.A521T 0.16 benign(0.023) TCGA-CD-A4MI-01 2 74689115 74689115 G A MOGS Nonsense_Mutation p.R601* 0.08 TCGA-CD-A4MI-01 2 74742968 74742968 G A TLX2 Silent p.T203T 0.23 TCGA-CD-A4MI-01 2 75280842 75280842 G - TACR1 Frame_Shift_Del p.L209Cfs*3 0.13 TCGA-CD-A4MI-01 2 75929496 75929496 C T GCFC2 Missense_Mutation p.A150T 0.15 deleterious(0) benign(0.08) TCGA-CD-A4MI-01 2 85924730 85924730 C T GNLY Silent p.T119T 0.14 TCGA-CD-A4MI-01 2 86255796 86255796 G A POLR1A Silent p.H1606H 0.09 TCGA-CD-A4MI-01 2 9547005 9547005 T C ITGB1BP1 Silent p.L187L 0.13 TCGA-CD-A4MI-01 2 96652538 96652538 T - ANKRD36C Frame_Shift_Del p.K149Nfs*24 0.10 TCGA-CD-A4MI-01 2 99858748 99858748 T C LYG2 3'UTR 0.18 TCGA-CD-A4MI-01 3 113503220 113503220 G T ATP6V1A Nonsense_Mutation p.G121* 0.15 TCGA-CD-A4MI-01 3 113761605 113761605 T C KIAA1407 Silent p.S120S 0.15 TCGA-CD-A4MI-01 3 113866314 113866314 C T DRD3 Nonsense_Mutation p.W158* 0.12 TCGA-CD-A4MI-01 3 120976118 120976118 T G STXBP5L Silent p.L590L 0.12 TCGA-CD-A4MI-01 3 123010154 123010154 G A ADCY5 Missense_Mutation p.P1045S 0.20 deleterious(0) probably_damaging(1) TCGA-CD-A4MI-01 3 123356957 123356957 G A MYLK Missense_Mutation p.A1641V 0.16 deleterious(0.04) benign(0.049) TCGA-CD-A4MI-01 3 127294786 127294788 GAA - TPRA1 In_Frame_Del p.F202del 0.15 TCGA-CD-A4MI-01 3 127327751 127327751 T A MCM2 Missense_Mutation p.V438D 0.16 deleterious(0) possibly_damaging(0.781) TCGA-CD-A4MI-01 3 128780678 128780678 G T GP9 Missense_Mutation p.M32I 0.24 tolerated(0.08) possibly_damaging(0.718) TCGA-CD-A4MI-01 3 129324661 129324661 C T PLXND1 Silent p.Q274Q 0.22 TCGA-CD-A4MI-01 3 130290188 130290188 G A COL6A6 Silent p.K976K 0.16 TCGA-CD-A4MI-01 3 135720391 135720391 C T PPP2R3A Silent p.S17S 0.10 TCGA-CD-A4MI-01 3 135870603 135870603 C T MSL2 Missense_Mutation p.V374M 0.17 tolerated(0.09) benign(0.386) TCGA-CD-A4MI-01 3 136323165 136323166 - C STAG1 Frame_Shift_Ins p.K95Efs*10 0.14 TCGA-CD-A4MI-01 3 142242920 142242921 - C ATR Frame_Shift_Ins p.E1356Gfs*20 0.18 TCGA-CD-A4MI-01 3 142681687 142681687 G A PAQR9 Silent p.Y164Y 0.11 TCGA-CD-A4MI-01 3 147128165 147128165 A C ZIC1 Missense_Mutation p.Y89S 0.14 deleterious(0.03) possibly_damaging(0.515) TCGA-CD-A4MI-01 3 15115637 15115637 C G ZFYVE20 Missense_Mutation p.E669D 0.12 tolerated_low_confidence(0.27) benign(0.005) TCGA-CD-A4MI-01 3 151165673 151165673 C T IGSF10 Missense_Mutation p.R699H 0.06 tolerated(0.06) benign(0) TCGA-CD-A4MI-01 3 15127396 15127396 A G ZFYVE20 Missense_Mutation p.V121A 0.12 deleterious(0.02) possibly_damaging(0.622) TCGA-CD-A4MI-01 3 160804229 160804229 T - B3GALNT1 Frame_Shift_Del p.K105Sfs*14 0.14 TCGA-CD-A4MI-01 3 160942803 160942804 - A NMD3 Frame_Shift_Ins p.G45Rfs*48 0.16 TCGA-CD-A4MI-01 3 16535299 16535299 A G RFTN1 Silent p.P26P 0.13 TCGA-CD-A4MI-01 3 170078165 170078165 A - SKIL Frame_Shift_Del p.K17Nfs*2 0.09 TCGA-CD-A4MI-01 3 170244705 170244705 C T SLC7A14 Silent p.S7S 0.21 TCGA-CD-A4MI-01 3 178785312 178785312 C T ZMAT3 Missense_Mutation p.V77I 0.10 deleterious(0.05) probably_damaging(0.99) TCGA-CD-A4MI-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.09 tolerated(0.11) possibly_damaging(0.529) TCGA-CD-A4MI-01 3 184104636 184104636 C T CHRD Nonsense_Mutation p.R734* 0.12 TCGA-CD-A4MI-01 3 185367313 185367313 G A IGF2BP2 Missense_Mutation p.R491W 0.19 deleterious(0.01) probably_damaging(1) TCGA-CD-A4MI-01 3 186915332 186915332 G A RTP1 Missense_Mutation p.R10H 0.12 deleterious_low_confidence(0.05) possibly_damaging(0.475) TCGA-CD-A4MI-01 3 190030735 190030735 A G CLDN1 Missense_Mutation p.M105T 0.12 tolerated(1) benign(0.097) TCGA-CD-A4MI-01 3 19479672 19479672 G A KCNH8 Silent p.L398L 0.11 TCGA-CD-A4MI-01 3 196198765 196198765 G A RNF168 Silent p.S547S 0.18 TCGA-CD-A4MI-01 3 3139598 3139598 G T IL5RA Missense_Mutation p.S222Y 0.17 deleterious(0) benign(0.317) TCGA-CD-A4MI-01 3 33194224 33194224 C T SUSD5 3'UTR 0.15 TCGA-CD-A4MI-01 3 37034610 37034610 C T EPM2AIP1 5'UTR 0.08 TCGA-CD-A4MI-01 3 38601732 38601732 C T SCN5A Missense_Mutation p.C1384Y 0.14 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MI-01 3 46307472 46307472 C T CCR3 Missense_Mutation p.R296W 0.15 tolerated(0.11) possibly_damaging(0.886) TCGA-CD-A4MI-01 3 46902256 46902256 A G MYL3 Missense_Mutation p.Y73H 0.11 tolerated(0.05) probably_damaging(0.987) TCGA-CD-A4MI-01 3 47037020 47037020 C T NBEAL2 Missense_Mutation p.P599S 0.18 deleterious(0) probably_damaging(1) TCGA-CD-A4MI-01 3 47545907 47545907 C T ELP6 Missense_Mutation p.G79E 0.07 deleterious(0) probably_damaging(0.967) TCGA-CD-A4MI-01 3 48631879 48631879 C A COL7A1 Missense_Mutation p.G63V 0.09 unknown(0) TCGA-CD-A4MI-01 3 48698723 48698723 C A CELSR3 Missense_Mutation p.G449C 0.18 deleterious(0) probably_damaging(1) TCGA-CD-A4MI-01 3 49059586 49059586 C A NDUFAF3 Silent p.T3T 0.08 TCGA-CD-A4MI-01 3 49152674 49152674 G T USP19 Missense_Mutation p.P668H 0.13 deleterious(0) probably_damaging(1) TCGA-CD-A4MI-01 3 49211691 49211691 G - KLHDC8B Frame_Shift_Del p.G134Efs*56 0.18 TCGA-CD-A4MI-01 3 49294312 49294312 A - CCDC36 Frame_Shift_Del p.K462Nfs*65 0.17 TCGA-CD-A4MI-01 3 49689123 49689123 G - BSN Frame_Shift_Del p.V713* 0.16 TCGA-CD-A4MI-01 3 49760036 49760036 C T GMPPB Missense_Mutation p.R185H 0.13 deleterious(0.04) probably_damaging(0.987) TCGA-CD-A4MI-01 3 50330720 50330720 G A HYAL3 Missense_Mutation p.P404L 0.16 tolerated(0.1) benign(0.13) TCGA-CD-A4MI-01 3 50340041 50340041 G A HYAL1 Missense_Mutation p.A116V 0.14 tolerated(0.49) benign(0.014) TCGA-CD-A4MI-01 3 51395471 51395471 T C DOCK3 Missense_Mutation p.I1616T 0.16 deleterious(0.03) benign(0.438) TCGA-CD-A4MI-01 3 52522247 52522247 G A NISCH Silent p.T913T 0.14 TCGA-CD-A4MI-01 3 52537421 52537421 G A STAB1 Silent p.K252K 0.11 TCGA-CD-A4MI-01 3 52556205 52556205 G - STAB1 Frame_Shift_Del p.G2143Afs*9 0.18 TCGA-CD-A4MI-01 3 52568541 52568545 GCACT ACA NT5DC2 5'Flank 0.17 TCGA-CD-A4MI-01 3 53911737 53911737 A G ACTR8 Silent p.D149D 0.14 TCGA-CD-A4MI-01 3 56114958 56114958 T - ERC2 Frame_Shift_Del p.T510Qfs*21 0.22 TCGA-CD-A4MI-01 3 56667826 56667826 A G FAM208A Missense_Mutation p.V998A 0.14 deleterious(0.02) benign(0.005) TCGA-CD-A4MI-01 3 57619023 57619023 A - DENND6A Frame_Shift_Del p.L441Wfs*3 0.16 TCGA-CD-A4MI-01 3 58107205 58107205 C A FLNB Missense_Mutation p.A1034D 0.10 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MI-01 3 58512309 58512309 C A ACOX2 Missense_Mutation p.R410S 0.11 tolerated(0.08) possibly_damaging(0.616) TCGA-CD-A4MI-01 3 62357249 62357249 G T FEZF2 Missense_Mutation p.Q316K 0.15 deleterious(0.05) possibly_damaging(0.621) TCGA-CD-A4MI-01 3 74474046 74474046 C T CNTN3 Missense_Mutation p.R135H 0.10 deleterious(0.02) probably_damaging(0.998) TCGA-CD-A4MI-01 3 78655965 78655965 C A ROBO1 Missense_Mutation p.Q1554H 0.16 deleterious(0) probably_damaging(0.976) TCGA-CD-A4MI-01 3 93605341 93605341 C T PROS1 Missense_Mutation p.V388M 0.10 deleterious(0) probably_damaging(0.977) TCGA-CD-A4MI-01 4 100003128 100003128 G A ADH5 Missense_Mutation p.A85V 0.11 tolerated(0.54) benign(0.04) TCGA-CD-A4MI-01 4 100815127 100815127 C - LAMTOR3 5'UTR 0.12 TCGA-CD-A4MI-01 4 123277081 123277081 A G KIAA1109 Silent p.L4812L 0.10 TCGA-CD-A4MI-01 4 123664512 123664512 G A BBS12 Missense_Mutation p.A489T 0.10 tolerated(0.25) benign(0.05) TCGA-CD-A4MI-01 4 125631672 125631673 - T ANKRD50 5'UTR 0.08 TCGA-CD-A4MI-01 4 126241924 126241924 G A FAT4 Missense_Mutation p.G1453D 0.10 probably_damaging(1) TCGA-CD-A4MI-01 4 126370814 126370814 C T FAT4 Silent p.C2881C 0.16 TCGA-CD-A4MI-01 4 128808580 128808580 C T PLK4 Missense_Mutation p.P463L 0.25 deleterious(0.03) benign(0.15) TCGA-CD-A4MI-01 4 129773269 129773269 G A JADE1 Missense_Mutation p.R181Q 0.05 tolerated(0.38) benign(0.009) TCGA-CD-A4MI-01 4 134072703 134072703 G A PCDH10 Missense_Mutation p.V470M 0.10 deleterious(0.03) probably_damaging(1) TCGA-CD-A4MI-01 4 1345607 1345607 G A UVSSA Silent p.A178A 0.13 TCGA-CD-A4MI-01 4 141321549 141321549 T - CLGN Frame_Shift_Del p.K219Sfs*14 0.18 TCGA-CD-A4MI-01 4 147363969 147363969 G A SLC10A7 Missense_Mutation p.A134V 0.13 deleterious(0.01) possibly_damaging(0.891) TCGA-CD-A4MI-01 4 149357499 149357499 C T NR3C2 Missense_Mutation p.V172M 0.09 tolerated_low_confidence(0.39) benign(0.004) TCGA-CD-A4MI-01 4 155505317 155505317 T C FGA Missense_Mutation p.R854G 0.09 deleterious(0.04) benign(0.162) TCGA-CD-A4MI-01 4 158281222 158281222 G A GRIA2 Missense_Mutation p.D740N 0.11 tolerated(0.06) probably_damaging(0.999) TCGA-CD-A4MI-01 4 159140505 159140505 C T TMEM144 Silent p.L126L 0.12 TCGA-CD-A4MI-01 4 159825770 159825770 T C FNIP2 3'UTR 0.17 TCGA-CD-A4MI-01 4 164394290 164394290 G A TKTL2 Silent p.G199G 0.14 TCGA-CD-A4MI-01 4 166915567 166915567 A G TLL1 Silent p.V132V 0.14 TCGA-CD-A4MI-01 4 17827008 17827008 G A NCAPG Missense_Mutation p.A493T 0.13 deleterious(0) probably_damaging(0.993) TCGA-CD-A4MI-01 4 1843476 1843476 G T LETM1 Silent p.S64S 0.11 TCGA-CD-A4MI-01 4 187155141 187155141 C T KLKB1 Missense_Mutation p.T86I 0.10 tolerated(0.19) benign(0.015) TCGA-CD-A4MI-01 4 187455439 187455439 G A MTNR1A Missense_Mutation p.L153F 0.14 deleterious(0.02) benign(0.049) TCGA-CD-A4MI-01 4 187530381 187530381 C T FAT1 Missense_Mutation p.V3388I 0.17 benign(0.013) TCGA-CD-A4MI-01 4 187557246 187557246 G T FAT1 Silent p.P1372P 0.18 TCGA-CD-A4MI-01 4 187557926 187557926 C T FAT1 Missense_Mutation p.R1262Q 0.10 benign(0.025) TCGA-CD-A4MI-01 4 23830112 23830112 G A PPARGC1A Missense_Mutation p.T223I 0.18 deleterious(0.02) probably_damaging(0.927) TCGA-CD-A4MI-01 4 25020788 25020788 C T LGI2 Splice_Site p.X162_splice 0.12 TCGA-CD-A4MI-01 4 25677886 25677886 G A SLC34A2 Missense_Mutation p.V530I 0.13 tolerated(0.7) benign(0.008) TCGA-CD-A4MI-01 4 30724462 30724462 C T PCDH7 Missense_Mutation p.A473V 0.15 tolerated(0.81) possibly_damaging(0.835) TCGA-CD-A4MI-01 4 3424244 3424244 C T RGS12 Missense_Mutation p.R994W 0.17 deleterious(0) probably_damaging(0.972) TCGA-CD-A4MI-01 4 41621327 41621327 T C LIMCH1 Missense_Mutation p.Y269H 0.11 deleterious(0.01) possibly_damaging(0.904) TCGA-CD-A4MI-01 4 524250 524251 TA - PIGG Frame_Shift_Del p.Y763Cfs*16 0.10 TCGA-CD-A4MI-01 4 53728795 53728795 G A RASL11B Missense_Mutation p.A41T 0.28 tolerated(0.17) benign(0.23) TCGA-CD-A4MI-01 4 5667369 5667369 G T EVC2 Missense_Mutation p.P293Q 0.12 tolerated(0.08) probably_damaging(1) TCGA-CD-A4MI-01 4 57356562 57356562 C T SRP72 Missense_Mutation p.R462W 0.09 deleterious(0) benign(0.427) TCGA-CD-A4MI-01 4 62453016 62453016 C A LPHN3 Missense_Mutation p.L43I 0.12 tolerated(0.1) probably_damaging(0.997) TCGA-CD-A4MI-01 4 65194268 65194268 T G TECRL Missense_Mutation p.K98T 0.12 tolerated(0.13) benign(0.075) TCGA-CD-A4MI-01 4 6580170 6580170 G A MAN2B2 Silent p.Q112Q 0.16 TCGA-CD-A4MI-01 4 66217312 66217312 T - EPHA5 Frame_Shift_Del p.N768Tfs*7 0.08 TCGA-CD-A4MI-01 4 74308075 74308075 C T AFP Missense_Mutation p.A182V 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-CD-A4MI-01 4 81123123 81123123 C A PRDM8 Silent p.P169P 0.11 TCGA-CD-A4MI-01 4 83278029 83278029 A G HNRNPD Missense_Mutation p.M258T 0.11 tolerated(0.33) benign(0.008) TCGA-CD-A4MI-01 4 8465746 8465746 T C TRMT44 Missense_Mutation p.F413S 0.13 deleterious(0) possibly_damaging(0.593) TCGA-CD-A4MI-01 4 88312256 88312256 T G HSD17B11 5'UTR 0.36 TCGA-CD-A4MI-01 4 95185970 95185970 T A SMARCAD1 Missense_Mutation p.I465N 0.09 deleterious(0) probably_damaging(0.993) TCGA-CD-A4MI-01 4 955358 955358 G A DGKQ Missense_Mutation p.S824L 0.17 deleterious(0) probably_damaging(1) TCGA-CD-A4MI-01 5 100191819 100191819 T C ST8SIA4 Missense_Mutation p.H262R 0.09 benign(0.022) TCGA-CD-A4MI-01 5 100238656 100238656 G A ST8SIA4 Missense_Mutation p.R2C 0.21 probably_damaging(0.973) TCGA-CD-A4MI-01 5 113822861 113822861 C T KCNN2 Nonsense_Mutation p.Q457* 0.15 TCGA-CD-A4MI-01 5 129070659 129070659 G A ADAMTS19 Missense_Mutation p.R1110H 0.10 deleterious(0) probably_damaging(1) TCGA-CD-A4MI-01 5 132198189 132198189 A C GDF9 Missense_Mutation p.L153V 0.13 deleterious(0) possibly_damaging(0.899) TCGA-CD-A4MI-01 5 133295584 133295584 A T C5orf15 Silent p.P89P 0.18 TCGA-CD-A4MI-01 5 134077026 134077026 G A CAMLG Missense_Mutation p.R149H 0.17 tolerated_low_confidence(0.19) benign(0.002) TCGA-CD-A4MI-01 5 136834106 136834106 C T SPOCK1 Missense_Mutation p.V48I 0.08 tolerated(1) benign(0.345) TCGA-CD-A4MI-01 5 137680834 137680834 G - FAM53C Frame_Shift_Del p.G154Vfs*152 0.12 TCGA-CD-A4MI-01 5 139747324 139747324 T C SLC4A9 Missense_Mutation p.L756P 0.08 deleterious(0) probably_damaging(1) TCGA-CD-A4MI-01 5 139887548 139887548 C A ANKHD1 Missense_Mutation p.L1244M 0.10 unknown(0) TCGA-CD-A4MI-01 5 140182444 140182444 C T PCDHA3 Silent p.F554F 0.11 TCGA-CD-A4MI-01 5 140188279 140188279 G T PCDHA4 Missense_Mutation p.A503S 0.14 tolerated_low_confidence(0.19) benign(0.039) TCGA-CD-A4MI-01 5 140188306 140188306 G A PCDHA4 Missense_Mutation p.A512T 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.85) TCGA-CD-A4MI-01 5 140223103 140223103 C T PCDHA8 Missense_Mutation p.R733W 0.12 deleterious_low_confidence(0) possibly_damaging(0.505) TCGA-CD-A4MI-01 5 140250189 140250190 CG - PCDHA11 Frame_Shift_Del p.L503Vfs*74 0.19 TCGA-CD-A4MI-01 5 140255709 140255709 G A PCDHA12 Missense_Mutation p.G218S 0.18 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CD-A4MI-01 5 140389267 140389267 C A PCDHAC1 Missense_Mutation p.S879R 0.11 deleterious(0.01) possibly_damaging(0.776) TCGA-CD-A4MI-01 5 140589598 140589598 A C PCDHB12 Missense_Mutation p.R373S 0.12 tolerated_low_confidence(0.21) benign(0.035) TCGA-CD-A4MI-01 5 140594909 140594909 C T PCDHB13 Missense_Mutation p.T405M 0.13 deleterious_low_confidence(0) possibly_damaging(0.894) TCGA-CD-A4MI-01 5 140725098 140725098 C - PCDHGA3 Frame_Shift_Del p.L501Cfs*17 0.16 TCGA-CD-A4MI-01 5 140764513 140764513 G A PCDHGA7 Missense_Mutation p.G683S 0.09 tolerated_low_confidence(0.2) benign(0.002) TCGA-CD-A4MI-01 5 140764701 140764701 G T PCDHGA7 Silent p.G745G 0.16 TCGA-CD-A4MI-01 5 140784497 140784497 C T PCDHGA9 Missense_Mutation p.L660F 0.09 deleterious_low_confidence(0.04) possibly_damaging(0.613) TCGA-CD-A4MI-01 5 140799684 140799685 - T PCDHGB7 Frame_Shift_Ins p.C755Lfs*12 0.10 TCGA-CD-A4MI-01 5 140802769 140802769 G A PCDHGA11 Missense_Mutation p.V659I 0.14 tolerated_low_confidence(0.07) possibly_damaging(0.642) TCGA-CD-A4MI-01 5 141050954 141050954 G T ARAP3 Missense_Mutation p.A623D 0.14 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MI-01 5 145175939 145175939 A G PRELID2 Intron 0.18 TCGA-CD-A4MI-01 5 145439617 145439617 C A SH3RF2 Missense_Mutation p.L582I 0.15 tolerated(0.36) benign(0.011) TCGA-CD-A4MI-01 5 14693056 14693056 C T FAM105B Missense_Mutation p.P320S 0.08 deleterious(0) probably_damaging(0.966) TCGA-CD-A4MI-01 5 148386498 148386498 C T SH3TC2 Silent p.L1207L 0.14 TCGA-CD-A4MI-01 5 149602570 149602570 G A CAMK2A Missense_Mutation p.A483V 0.11 tolerated_low_confidence(0.06) benign(0.445) TCGA-CD-A4MI-01 5 153789220 153789220 C T GALNT10 Silent p.S428S 0.10 TCGA-CD-A4MI-01 5 15500696 15500696 C T FBXL7 5'UTR 0.12 TCGA-CD-A4MI-01 5 156899454 156899454 T C NIPAL4 Missense_Mutation p.I296T 0.14 deleterious(0.01) probably_damaging(0.924) TCGA-CD-A4MI-01 5 158524021 158524021 G A EBF1 Silent p.I84I 0.11 TCGA-CD-A4MI-01 5 158601022 158601022 G A RNF145 Missense_Mutation p.R286C 0.10 deleterious(0) probably_damaging(0.964) TCGA-CD-A4MI-01 5 158743807 158743807 C A IL12B Silent p.T291T 0.18 TCGA-CD-A4MI-01 5 168187941 168187941 C T SLIT3 Silent p.L537L 0.08 TCGA-CD-A4MI-01 5 170215633 170215633 T A GABRP Missense_Mutation p.L5H 0.14 deleterious_low_confidence(0.01) benign(0.219) TCGA-CD-A4MI-01 5 176673788 176673788 A G NSD1 Silent p.P1496P 0.09 TCGA-CD-A4MI-01 5 176793200 176793200 C A RGS14 Silent p.P30P 0.21 TCGA-CD-A4MI-01 5 178557097 178557097 C T ADAMTS2 Missense_Mutation p.V765I 0.09 tolerated(0.49) benign(0.02) TCGA-CD-A4MI-01 5 179290808 179290809 - C TBC1D9B Frame_Shift_Ins p.S1132Qfs*14 0.18 TCGA-CD-A4MI-01 5 180043407 180043407 C T FLT4 Missense_Mutation p.R1060Q 0.16 deleterious(0) probably_damaging(0.998) TCGA-CD-A4MI-01 5 180661483 180661483 G A TRIM41 Missense_Mutation p.R534H 0.15 deleterious(0) possibly_damaging(0.501) TCGA-CD-A4MI-01 5 2749036 2749036 G A IRX2 Silent p.D262D 0.09 TCGA-CD-A4MI-01 5 2749798 2749798 C G IRX2 Missense_Mutation p.R118P 0.06 tolerated(0.1) probably_damaging(0.997) TCGA-CD-A4MI-01 5 32073990 32073990 C T PDZD2 Silent p.S926S 0.13 TCGA-CD-A4MI-01 5 32090739 32090739 C T PDZD2 Silent p.R2395R 0.11 TCGA-CD-A4MI-01 5 32126337 32126337 A G GOLPH3 Missense_Mutation p.V293A 0.13 deleterious(0.05) benign(0.113) TCGA-CD-A4MI-01 5 35991391 35991391 C T UGT3A1 5'UTR 0.14 TCGA-CD-A4MI-01 5 38445754 38445755 - T EGFLAM Intron 0.11 TCGA-CD-A4MI-01 5 38504084 38504084 T G LIFR Missense_Mutation p.Q477H 0.08 tolerated(0.09) benign(0.004) TCGA-CD-A4MI-01 5 41000384 41000384 G A MROH2B Missense_Mutation p.R1474C 0.08 deleterious(0.01) possibly_damaging(0.655) TCGA-CD-A4MI-01 5 43039978 43039978 A G ANXA2R Silent p.L57L 0.12 TCGA-CD-A4MI-01 5 43609363 43609363 C A NNT Silent p.S22S 0.14 TCGA-CD-A4MI-01 5 485314 485314 C T SLC9A3 Silent p.A236A 0.15 TCGA-CD-A4MI-01 5 56170909 56170910 GA - MAP3K1 Frame_Shift_Del p.E581Dfs*9 0.12 TCGA-CD-A4MI-01 5 61669536 61669536 C A KIF2A Missense_Mutation p.P595T 0.15 tolerated(0.16) benign(0.037) TCGA-CD-A4MI-01 5 61677078 61677078 G - KIF2A Frame_Shift_Del 0.08 TCGA-CD-A4MI-01 5 61821993 61821993 C A IPO11 Missense_Mutation p.L681M 0.06 deleterious(0.04) possibly_damaging(0.618) TCGA-CD-A4MI-01 5 64267563 64267563 A G CWC27 Missense_Mutation p.E359G 0.21 deleterious(0) possibly_damaging(0.507) TCGA-CD-A4MI-01 5 666085 666085 C A TPPP Silent p.T155T 0.11 TCGA-CD-A4MI-01 5 68487667 68487667 G A CENPH Missense_Mutation p.M60I 0.11 tolerated(0.19) benign(0.002) TCGA-CD-A4MI-01 5 74041649 74041649 C T GFM2 Missense_Mutation p.V235M 0.10 tolerated(0.05) benign(0.112) TCGA-CD-A4MI-01 5 7727281 7727281 G A ADCY2 Missense_Mutation p.R593Q 0.24 deleterious(0) probably_damaging(0.997) TCGA-CD-A4MI-01 5 82832916 82832916 A G VCAN Missense_Mutation p.H1365R 0.17 deleterious(0.02) possibly_damaging(0.735) TCGA-CD-A4MI-01 5 95236414 95236414 C T ELL2 Missense_Mutation p.A313T 0.18 tolerated(0.15) benign(0.001) TCGA-CD-A4MI-01 5 96126301 96126301 C T ERAP1 Missense_Mutation p.A456T 0.14 tolerated(0.25) benign(0.005) TCGA-CD-A4MI-01 6 101086686 101086686 G C ASCC3 Missense_Mutation p.L1305V 0.11 deleterious(0.01) possibly_damaging(0.852) TCGA-CD-A4MI-01 6 106555298 106555298 C T PRDM1 Silent p.S805S 0.10 TCGA-CD-A4MI-01 6 107390914 107390914 G - BEND3 Frame_Shift_Del p.P494Rfs*46 0.09 TCGA-CD-A4MI-01 6 107390934 107390934 C T BEND3 Silent p.A487A 0.13 TCGA-CD-A4MI-01 6 10764752 10764752 C T MAK Missense_Mutation p.R602H 0.20 tolerated(0.08) benign(0.028) TCGA-CD-A4MI-01 6 107955346 107955346 G A SOBP Missense_Mutation p.G433D 0.12 deleterious(0.02) probably_damaging(1) TCGA-CD-A4MI-01 6 11105044 11105044 C T ERVFRD-1 Missense_Mutation p.R167H 0.12 tolerated_low_confidence(0.18) benign(0) TCGA-CD-A4MI-01 6 111995713 111995713 A G FYN Missense_Mutation p.V465A 0.11 deleterious(0) probably_damaging(0.998) TCGA-CD-A4MI-01 6 117884447 117884447 C T GOPC Silent p.L453L 0.09 TCGA-CD-A4MI-01 6 121768598 121768598 G A GJA1 Missense_Mutation p.R202H 0.12 deleterious(0.02) benign(0.312) TCGA-CD-A4MI-01 6 124979412 124979412 G A NKAIN2 Silent p.T118T 0.11 TCGA-CD-A4MI-01 6 129759816 129759816 A - LAMA2 Frame_Shift_Del p.T2000Pfs*3 0.12 TCGA-CD-A4MI-01 6 134210757 134210757 G T TCF21 Missense_Mutation p.Q74H 0.16 tolerated(0.16) possibly_damaging(0.719) TCGA-CD-A4MI-01 6 137528135 137528135 C A IFNGR1 Missense_Mutation p.Q55H 0.15 tolerated(0.08) benign(0.101) TCGA-CD-A4MI-01 6 14133942 14133942 C T CD83 Silent p.L149L 0.09 TCGA-CD-A4MI-01 6 142409452 142409452 C T NMBR Missense_Mutation p.G115D 0.09 deleterious(0) probably_damaging(0.949) TCGA-CD-A4MI-01 6 146755425 146755425 G T GRM1 Missense_Mutation p.Q1026H 0.10 tolerated_low_confidence(0.12) benign(0.002) TCGA-CD-A4MI-01 6 150016224 150016224 G A LATS1 Missense_Mutation p.A161V 0.15 deleterious_low_confidence(0.01) benign(0.11) TCGA-CD-A4MI-01 6 151336756 151336756 C A MTHFD1L Nonsense_Mutation p.S838* 0.14 TCGA-CD-A4MI-01 6 151672365 151672365 C - AKAP12 Frame_Shift_Del p.T949Rfs*23 0.16 TCGA-CD-A4MI-01 6 152708428 152708428 T - SYNE1 Frame_Shift_Del p.I2756* 0.11 TCGA-CD-A4MI-01 6 160485488 160485488 G - IGF2R Frame_Shift_Del p.D1317Tfs*27 0.27 TCGA-CD-A4MI-01 6 160501183 160501183 T C IGF2R Silent p.C1903C 0.17 TCGA-CD-A4MI-01 6 161470592 161470592 C A MAP3K4 Missense_Mutation p.P430T 0.13 deleterious(0.01) possibly_damaging(0.611) TCGA-CD-A4MI-01 6 161514015 161514015 C T MAP3K4 Missense_Mutation p.A1092V 0.09 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MI-01 6 16328505 16328505 G A ATXN1 Missense_Mutation p.P13S 0.15 deleterious(0) probably_damaging(0.998) TCGA-CD-A4MI-01 6 165846548 165846548 T A PDE10A Missense_Mutation p.I203F 0.15 deleterious(0) probably_damaging(0.96) TCGA-CD-A4MI-01 6 168227076 168227076 G A MLLT4 5'Flank 0.23 TCGA-CD-A4MI-01 6 170059238 170059238 C T WDR27 Silent p.A421A 0.18 TCGA-CD-A4MI-01 6 18122226 18122226 A - NHLRC1 Frame_Shift_Del p.F204Lfs*28 0.14 TCGA-CD-A4MI-01 6 28056560 28056560 A G ZNF165 Missense_Mutation p.K257R 0.14 tolerated(0.27) probably_damaging(0.978) TCGA-CD-A4MI-01 6 30166872 30166872 C A TRIM26 Silent p.T3T 0.12 TCGA-CD-A4MI-01 6 31508952 31508952 T C DDX39B Intron 0.16 TCGA-CD-A4MI-01 6 31779132 31779132 T C HSPA1L Silent p.T206T 0.11 TCGA-CD-A4MI-01 6 31779627 31779627 G - HSPA1L Frame_Shift_Del p.S42Afs*20 0.16 TCGA-CD-A4MI-01 6 31975180 31975180 C T C4A 3'Flank 0.10 TCGA-CD-A4MI-01 6 32007916 32007916 C T CYP21A2 Silent p.I291I 0.05 TCGA-CD-A4MI-01 6 32155040 32155040 G T PBX2 Missense_Mutation p.P335T 0.11 deleterious(0.01) possibly_damaging(0.811) TCGA-CD-A4MI-01 6 32364033 32364033 A G BTNL2 Silent p.R287R 0.10 TCGA-CD-A4MI-01 6 34003601 34003601 C T GRM4 Silent p.L762L 0.13 TCGA-CD-A4MI-01 6 34392485 34392485 G A RPS10 Missense_Mutation p.R95C 0.07 tolerated(0.16) benign(0.072) TCGA-CD-A4MI-01 6 35762845 35762845 G A CLPS 3'UTR 0.13 TCGA-CD-A4MI-01 6 36339255 36339255 G A ETV7 Silent p.G172G 0.18 TCGA-CD-A4MI-01 6 38800181 38800181 C T DNAH8 Silent p.D1207D 0.10 TCGA-CD-A4MI-01 6 39688506 39688506 T C KIF6 Missense_Mutation p.N50D 0.13 deleterious(0.03) probably_damaging(0.951) TCGA-CD-A4MI-01 6 4069468 4069468 A G FAM217A Missense_Mutation p.V330A 0.18 tolerated(0.96) benign(0.002) TCGA-CD-A4MI-01 6 41884548 41884548 C T MED20 Silent p.T48T 0.15 TCGA-CD-A4MI-01 6 43018788 43018788 C T CUL7 Missense_Mutation p.R468Q 0.13 deleterious(0) probably_damaging(0.995) TCGA-CD-A4MI-01 6 43250532 43250532 A G TTBK1 Missense_Mutation p.Y685C 0.16 probably_damaging(0.948) TCGA-CD-A4MI-01 6 43305046 43305046 G A ZNF318 Silent p.G2230G 0.11 TCGA-CD-A4MI-01 6 44271116 44271116 C A AARS2 Silent p.V684V 0.12 TCGA-CD-A4MI-01 6 44336140 44336141 - A SPATS1 Frame_Shift_Ins p.L202Vfs*15 0.14 TCGA-CD-A4MI-01 6 44371656 44371656 A - CDC5L Frame_Shift_Del p.K219Sfs*24 0.12 TCGA-CD-A4MI-01 6 44376246 44376246 T C CDC5L Silent p.T323T 0.11 TCGA-CD-A4MI-01 6 46677119 46677119 G A PLA2G7 Missense_Mutation p.H272Y 0.13 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MI-01 6 50683193 50683193 G C TFAP2D Missense_Mutation p.G135A 0.15 tolerated(0.09) probably_damaging(0.91) TCGA-CD-A4MI-01 6 51613339 51613339 G A PKHD1 Silent p.G3025G 0.14 TCGA-CD-A4MI-01 6 56485139 56485139 C A DST Intron 0.08 TCGA-CD-A4MI-01 6 656464 656464 G A HUS1B Missense_Mutation p.R161C 0.08 tolerated(0.19) possibly_damaging(0.493) TCGA-CD-A4MI-01 6 7393491 7393491 A G RIOK1 Silent p.G77G 0.12 TCGA-CD-A4MI-01 6 74351590 74351590 A - SLC17A5 Frame_Shift_Del p.Y117Mfs*17 0.13 TCGA-CD-A4MI-01 6 7583718 7583718 C T DSP Missense_Mutation p.R2075W 0.12 probably_damaging(0.999) TCGA-CD-A4MI-01 6 7585144 7585144 G T DSP Missense_Mutation p.G2550V 0.12 probably_damaging(1) TCGA-CD-A4MI-01 6 76564979 76564979 G A MYO6 Missense_Mutation p.G401D 0.16 deleterious(0) unknown(0) TCGA-CD-A4MI-01 6 76623846 76623846 G A MYO6 Missense_Mutation p.R1169H 0.14 deleterious(0) probably_damaging(1) TCGA-CD-A4MI-01 6 80196841 80196842 - A LCA5 Frame_Shift_Ins p.L659Pfs*3 0.14 TCGA-CD-A4MI-01 6 82911177 82911177 C T IBTK Missense_Mutation p.G918S 0.14 deleterious(0.02) benign(0.002) TCGA-CD-A4MI-01 6 87964573 87964573 T A ZNF292 Nonsense_Mutation p.L409* 0.16 TCGA-CD-A4MI-01 6 90366466 90366466 A C MDN1 Missense_Mutation p.F5080V 0.13 unknown(0) TCGA-CD-A4MI-01 6 96034484 96034484 A G MANEA Missense_Mutation p.K57E 0.10 tolerated(0.34) benign(0.157) TCGA-CD-A4MI-01 6 97562303 97562303 C A KLHL32 Missense_Mutation p.N424K 0.14 deleterious(0) probably_damaging(0.998) TCGA-CD-A4MI-01 6 97626340 97626340 T - MMS22L Frame_Shift_Del p.A887Hfs*11 0.21 TCGA-CD-A4MI-01 7 100349934 100349935 - A ZAN Frame_Shift_Ins p.P738Tfs*69 0.11 TCGA-CD-A4MI-01 7 100483916 100483916 C T SRRT Missense_Mutation p.R503C 0.14 deleterious(0) possibly_damaging(0.586) TCGA-CD-A4MI-01 7 100732461 100732461 G A TRIM56 Missense_Mutation p.R623Q 0.13 deleterious(0.01) probably_damaging(0.951) TCGA-CD-A4MI-01 7 100849621 100849621 C T PLOD3 Missense_Mutation p.E720K 0.10 deleterious(0) probably_damaging(0.937) TCGA-CD-A4MI-01 7 102087428 102087428 C T ORAI2 Missense_Mutation p.R232C 0.19 deleterious(0.04) benign(0.353) TCGA-CD-A4MI-01 7 103014994 103014994 G T SLC26A5 Missense_Mutation p.P696H 0.09 deleterious(0.02) probably_damaging(1) TCGA-CD-A4MI-01 7 103236956 103236957 - C RELN Frame_Shift_Ins p.I1163Hfs*48 0.19 TCGA-CD-A4MI-01 7 11485856 11485856 C T THSD7A Missense_Mutation p.V966M 0.12 tolerated(0.18) benign(0.051) TCGA-CD-A4MI-01 7 120496814 120496814 C T TSPAN12 Missense_Mutation p.A2T 0.12 deleterious(0.01) benign(0.077) TCGA-CD-A4MI-01 7 121716636 121716636 C A AASS Missense_Mutation p.M896I 0.10 tolerated(0.49) benign(0.002) TCGA-CD-A4MI-01 7 127222690 127222690 C T GCC1 Missense_Mutation p.R569Q 0.19 tolerated(0.08) benign(0.001) TCGA-CD-A4MI-01 7 127235972 127235972 G T FSCN3 Missense_Mutation p.R252S 0.10 tolerated(0.33) benign(0.031) TCGA-CD-A4MI-01 7 135368918 135368918 G - SLC13A4 Frame_Shift_Del p.P566Lfs*17 0.18 TCGA-CD-A4MI-01 7 135384171 135384171 G T SLC13A4 Silent p.G279G 0.18 TCGA-CD-A4MI-01 7 138711299 138711299 G A ZC3HAV1L Silent p.C298C 0.07 TCGA-CD-A4MI-01 7 142428946 142428946 C A TRBV28 Silent p.T102T 0.08 TCGA-CD-A4MI-01 7 144015504 144015504 G A OR2A1 Missense_Mutation p.C96Y 0.05 deleterious(0) possibly_damaging(0.752) TCGA-CD-A4MI-01 7 144098459 144098459 C T NOBOX Missense_Mutation p.R175H 0.19 deleterious(0.02) possibly_damaging(0.673) TCGA-CD-A4MI-01 7 150164231 150164232 - A GIMAP8 Frame_Shift_Ins p.N151Kfs*12 0.12 TCGA-CD-A4MI-01 7 150325347 150325347 G A GIMAP6 Silent p.C113C 0.16 TCGA-CD-A4MI-01 7 150768521 150768521 C T SLC4A2 Missense_Mutation p.P674S 0.13 deleterious(0.02) probably_damaging(0.986) TCGA-CD-A4MI-01 7 150864251 150864251 C T GBX1 Missense_Mutation p.A129T 0.24 tolerated(0.61) benign(0) TCGA-CD-A4MI-01 7 151853315 151853315 T G KMT2C Missense_Mutation p.K3929N 0.11 possibly_damaging(0.58) TCGA-CD-A4MI-01 7 156798390 156798390 T C MNX1 Missense_Mutation p.S344G 0.14 tolerated(0.4) benign(0.003) TCGA-CD-A4MI-01 7 15725591 15725591 G A MEOX2 Missense_Mutation p.P146L 0.12 tolerated(0.06) benign(0.073) TCGA-CD-A4MI-01 7 23650845 23650845 T C CCDC126 5'UTR 0.12 TCGA-CD-A4MI-01 7 2419928 2419928 C T EIF3B 3'UTR 0.14 TCGA-CD-A4MI-01 7 27170241 27170241 C T HOXA4 Missense_Mutation p.G38R 0.27 tolerated(0.16) probably_damaging(0.956) TCGA-CD-A4MI-01 7 27204787 27204787 G A HOXA9 Missense_Mutation p.P97L 0.14 tolerated(0.35) benign(0.245) TCGA-CD-A4MI-01 7 27839705 27839705 A T TAX1BP1 Missense_Mutation p.Y587F 0.09 tolerated(0.26) benign(0.018) TCGA-CD-A4MI-01 7 30494838 30494838 G A NOD1 Silent p.Y97Y 0.10 TCGA-CD-A4MI-01 7 35244126 35244126 T C TBX20 Missense_Mutation p.E320G 0.18 tolerated(0.07) benign(0.024) TCGA-CD-A4MI-01 7 35674970 35674970 G A HERPUD2 Missense_Mutation p.P239L 0.11 deleterious(0) possibly_damaging(0.558) TCGA-CD-A4MI-01 7 37988614 37988614 G A EPDR1 Missense_Mutation p.V148I 0.10 deleterious(0.04) benign(0.206) TCGA-CD-A4MI-01 7 42005509 42005509 G A GLI3 Silent p.G1054G 0.13 TCGA-CD-A4MI-01 7 43477737 43477737 G A HECW1 Missense_Mutation p.A313T 0.12 tolerated(0.1) probably_damaging(0.998) TCGA-CD-A4MI-01 7 47851635 47851635 G A PKD1L1 Missense_Mutation p.T2454I 0.27 deleterious(0.04) benign(0.021) TCGA-CD-A4MI-01 7 53103493 53103493 G A POM121L12 Silent p.T43T 0.09 TCGA-CD-A4MI-01 7 55224270 55224270 A G EGFR Missense_Mutation p.I351V 0.14 tolerated(1) benign(0.011) TCGA-CD-A4MI-01 7 6449932 6449932 C - DAGLB Frame_Shift_Del p.G550Afs*6 0.12 TCGA-CD-A4MI-01 7 65432725 65432725 A G GUSB Missense_Mutation p.F549S 0.12 deleterious(0) benign(0.317) TCGA-CD-A4MI-01 7 69364323 69364323 C A AUTS2 Missense_Mutation p.L121M 0.10 deleterious(0.02) probably_damaging(0.986) TCGA-CD-A4MI-01 7 69583138 69583138 C A AUTS2 Missense_Mutation p.S181R 0.19 tolerated(0.46) benign(0.282) TCGA-CD-A4MI-01 7 70255474 70255474 G C AUTS2 Missense_Mutation p.G1091A 0.11 tolerated(0.61) benign(0.02) TCGA-CD-A4MI-01 7 73279655 73279655 G A WBSCR28 Silent p.L135L 0.16 TCGA-CD-A4MI-01 7 73635972 73635972 C A LAT2 Missense_Mutation p.P113H 0.12 deleterious(0) probably_damaging(0.929) TCGA-CD-A4MI-01 7 7495740 7495740 C - COL28A1 Frame_Shift_Del p.D436Ifs*2 0.17 TCGA-CD-A4MI-01 7 7612108 7612108 T C MIOS Translation_Start_Site p.M1? 0.09 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MI-01 7 80387683 80387683 C T SEMA3C Missense_Mutation p.G536D 0.11 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MI-01 7 82764462 82764463 - T PCLO Frame_Shift_Ins p.P802Tfs*16 0.10 TCGA-CD-A4MI-01 7 83591011 83591011 G T SEMA3A Silent p.T664T 0.10 TCGA-CD-A4MI-01 7 8475382 8475382 G A NXPH1 Silent p.Q13Q 0.16 TCGA-CD-A4MI-01 7 87035769 87035769 C T ABCB4 Nonsense_Mutation p.W1114* 0.12 TCGA-CD-A4MI-01 7 88847469 88847469 G C ZNF804B Missense_Mutation p.D37H 0.18 deleterious(0) probably_damaging(0.945) TCGA-CD-A4MI-01 7 90895674 90895674 G A FZD1 Silent p.A493A 0.14 TCGA-CD-A4MI-01 7 94740588 94740588 C A PPP1R9A Silent p.S471S 0.16 TCGA-CD-A4MI-01 7 99474544 99474544 G A OR2AE1 Missense_Mutation p.A38V 0.12 deleterious(0) probably_damaging(0.998) TCGA-CD-A4MI-01 7 99490019 99490019 C T TRIM4 Missense_Mutation p.A424T 0.12 tolerated(0.16) possibly_damaging(0.795) TCGA-CD-A4MI-01 8 103289341 103289342 - C UBR5 Frame_Shift_Ins p.E2123Gfs*11 0.13 TCGA-CD-A4MI-01 8 10467926 10467926 T C RP1L1 Missense_Mutation p.T1228A 0.13 benign(0.095) TCGA-CD-A4MI-01 8 10468442 10468442 C T RP1L1 Missense_Mutation p.A1056T 0.25 benign(0.19) TCGA-CD-A4MI-01 8 105367351 105367351 A - DCSTAMP Frame_Shift_Del p.R428Dfs*13 0.16 TCGA-CD-A4MI-01 8 124333358 124333358 C T ATAD2 3'UTR 0.10 TCGA-CD-A4MI-01 8 126061300 126061300 C T KIAA0196 Missense_Mutation p.R776H 0.11 deleterious(0) probably_damaging(1) TCGA-CD-A4MI-01 8 131140189 131140189 G A ASAP1 Silent p.C455C 0.10 TCGA-CD-A4MI-01 8 131172126 131172126 G A ASAP1 Silent p.L332L 0.13 TCGA-CD-A4MI-01 8 133906122 133906122 G A TG Silent p.A983A 0.12 TCGA-CD-A4MI-01 8 134488254 134488254 C T ST3GAL1 Missense_Mutation p.R5Q 0.11 benign(0.007) TCGA-CD-A4MI-01 8 142432328 142432328 G A PTP4A3 5'UTR 0.09 TCGA-CD-A4MI-01 8 143614778 143614778 C T BAI1 Missense_Mutation p.S1174L 0.10 deleterious(0.01) possibly_damaging(0.651) TCGA-CD-A4MI-01 8 144733545 144733545 C T ZNF623 Silent p.N501N 0.10 TCGA-CD-A4MI-01 8 144991091 144991091 G A PLEC Missense_Mutation p.R4437W 0.12 probably_damaging(0.999) TCGA-CD-A4MI-01 8 144991208 144991208 C T PLEC Missense_Mutation p.A4398T 0.10 benign(0.126) TCGA-CD-A4MI-01 8 144992277 144992277 G A PLEC Silent p.D4041D 0.22 TCGA-CD-A4MI-01 8 145095491 145095491 C A SPATC1 Silent p.P263P 0.10 TCGA-CD-A4MI-01 8 145692675 145692675 G A KIFC2 Silent p.L140L 0.17 TCGA-CD-A4MI-01 8 145749740 145749740 T G LRRC14 3'UTR 0.21 TCGA-CD-A4MI-01 8 146156815 146156815 C A ZNF16 Missense_Mutation p.R453I 0.18 deleterious(0.01) possibly_damaging(0.668) TCGA-CD-A4MI-01 8 146278795 146278795 C T C8orf33 Silent p.A172A 0.16 TCGA-CD-A4MI-01 8 146279622 146279622 C G C8orf33 3'UTR 0.18 TCGA-CD-A4MI-01 8 1497565 1497565 A G DLGAP2 Missense_Mutation p.N236D 0.11 tolerated(0.3) benign(0.028) TCGA-CD-A4MI-01 8 163606 163606 C T RPL23AP53 RNA 0.14 TCGA-CD-A4MI-01 8 21958382 21958382 C T FAM160B2 Silent p.T505T 0.15 TCGA-CD-A4MI-01 8 22012138 22012138 G A LGI3 Silent p.L95L 0.12 TCGA-CD-A4MI-01 8 22473261 22473261 G A CCAR2 Missense_Mutation p.A482T 0.11 tolerated(0.43) benign(0.001) TCGA-CD-A4MI-01 8 27146721 27146721 G A TRIM35 Nonsense_Mutation p.Q288* 0.09 TCGA-CD-A4MI-01 8 27327344 27327344 C T CHRNA2 Silent p.P76P 0.09 TCGA-CD-A4MI-01 8 3046481 3046481 G A CSMD1 Silent p.G1817G 0.09 TCGA-CD-A4MI-01 8 30695230 30695230 C A TEX15 Missense_Mutation p.G2474V 0.13 deleterious(0.01) benign(0.002) TCGA-CD-A4MI-01 8 37730383 37730383 T G RAB11FIP1 Missense_Mutation p.N646T 0.09 deleterious(0.01) benign(0.085) TCGA-CD-A4MI-01 8 41836271 41836271 C T KAT6A Missense_Mutation p.R311Q 0.10 possibly_damaging(0.85) TCGA-CD-A4MI-01 8 48701529 48701529 A G PRKDC Missense_Mutation p.Y3613H 0.12 benign(0.059) TCGA-CD-A4MI-01 8 63939790 63939790 G A GGH Missense_Mutation p.R104C 0.16 deleterious(0.01) possibly_damaging(0.762) TCGA-CD-A4MI-01 8 67405953 67405953 G A C8orf46 Missense_Mutation p.V24I 0.07 tolerated(0.2) benign(0.097) TCGA-CD-A4MI-01 8 69069574 69069574 G T PREX2 Nonsense_Mutation p.G1417* 0.11 TCGA-CD-A4MI-01 8 70744535 70744535 G A SLCO5A1 Missense_Mutation p.T125M 0.15 deleterious(0) possibly_damaging(0.63) TCGA-CD-A4MI-01 8 72123392 72123392 T - EYA1 Frame_Shift_Del p.K566Sfs*73 0.10 TCGA-CD-A4MI-01 8 77766323 77766323 C - ZFHX4 Frame_Shift_Del p.L2391* 0.12 TCGA-CD-A4MI-01 8 87230057 87230057 G A SLC7A13 Missense_Mutation p.A274V 0.18 deleterious(0.04) possibly_damaging(0.904) TCGA-CD-A4MI-01 8 88885021 88885021 G T DCAF4L2 Silent p.S393S 0.11 TCGA-CD-A4MI-01 8 9565940 9565940 A - TNKS Frame_Shift_Del p.T508Hfs*33 0.17 TCGA-CD-A4MI-01 9 100380087 100380087 G T TSTD2 Silent p.I185I 0.10 TCGA-CD-A4MI-01 9 100693288 100693288 T C HEMGN Missense_Mutation p.E130G 0.15 tolerated(0.07) benign(0.116) TCGA-CD-A4MI-01 9 100895424 100895424 C T CORO2A Missense_Mutation p.V182M 0.16 tolerated(0.08) possibly_damaging(0.547) TCGA-CD-A4MI-01 9 101014085 101014085 C T TBC1D2 Missense_Mutation p.V165I 0.13 tolerated(0.18) benign(0.031) TCGA-CD-A4MI-01 9 104357023 104357023 C T PPP3R2 Missense_Mutation p.V64I 0.12 tolerated(1) benign(0.002) TCGA-CD-A4MI-01 9 108126852 108126852 T C SLC44A1 Silent p.N368N 0.12 TCGA-CD-A4MI-01 9 114304716 114304716 G T ZNF483 Missense_Mutation p.G501W 0.09 deleterious(0.03) probably_damaging(0.993) TCGA-CD-A4MI-01 9 114453877 114453877 C T C9orf84 Silent p.R1396R 0.09 TCGA-CD-A4MI-01 9 115805249 115805249 C T ZFP37 Missense_Mutation p.C550Y 0.17 deleterious(0) benign(0.231) TCGA-CD-A4MI-01 9 117579 117579 C T FOXD4 Missense_Mutation p.D181N 0.05 deleterious(0) probably_damaging(0.997) TCGA-CD-A4MI-01 9 123903687 123903687 A G CNTRL Missense_Mutation p.K838E 0.15 possibly_damaging(0.566) TCGA-CD-A4MI-01 9 125330410 125330410 A G OR1L8 Missense_Mutation p.L116P 0.18 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MI-01 9 125562752 125562752 G A OR1K1 Silent p.A117A 0.10 TCGA-CD-A4MI-01 9 127262453 127262453 G A NR5A1 Silent p.F262F 0.16 TCGA-CD-A4MI-01 9 127965332 127965332 A G RABEPK Missense_Mutation p.R14G 0.08 deleterious(0.01) benign(0.275) TCGA-CD-A4MI-01 9 131346761 131346761 G A SPTAN1 Silent p.T798T 0.11 TCGA-CD-A4MI-01 9 131503159 131503159 G T ZER1 Missense_Mutation p.P582Q 0.08 deleterious(0.03) probably_damaging(1) TCGA-CD-A4MI-01 9 131671140 131671140 G A LRRC8A Missense_Mutation p.G566D 0.11 deleterious(0.01) possibly_damaging(0.878) TCGA-CD-A4MI-01 9 131764178 131764178 G A NUP188 Missense_Mutation p.A1354T 0.07 deleterious(0.02) probably_damaging(0.958) TCGA-CD-A4MI-01 9 13190239 13190239 C T MPDZ Silent p.A676A 0.08 TCGA-CD-A4MI-01 9 132576463 132576463 T C TOR1A Missense_Mutation p.I263V 0.15 tolerated(0.33) probably_damaging(0.977) TCGA-CD-A4MI-01 9 134955187 134955187 G A MED27 Silent p.S15S 0.32 TCGA-CD-A4MI-01 9 135765234 135765234 G A C9orf9 Intron 0.14 TCGA-CD-A4MI-01 9 138714882 138714882 A C CAMSAP1 Missense_Mutation p.L542R 0.11 deleterious(0) probably_damaging(0.995) TCGA-CD-A4MI-01 9 139091594 139091594 G A LHX3 Silent p.G133G 0.10 TCGA-CD-A4MI-01 9 139873455 139873455 G A PTGDS Missense_Mutation p.R42H 0.19 deleterious(0.04) benign(0.013) TCGA-CD-A4MI-01 9 139905912 139905912 C T ABCA2 Missense_Mutation p.G1916S 0.15 deleterious(0) probably_damaging(1) TCGA-CD-A4MI-01 9 139945517 139945517 C - ENTPD2 Frame_Shift_Del p.G204Vfs*171 0.14 TCGA-CD-A4MI-01 9 139983450 139983450 C T MAN1B1 Missense_Mutation p.S153L 0.16 tolerated(0.3) benign(0.001) TCGA-CD-A4MI-01 9 140137991 140137993 GAG - TUBB4B In_Frame_Del p.E443del 0.09 TCGA-CD-A4MI-01 9 140139864 140139864 G A FAM166A Silent p.C139C 0.15 TCGA-CD-A4MI-01 9 19622274 19622274 A C SLC24A2 Missense_Mutation p.D318E 0.10 tolerated(0.26) benign(0.004) TCGA-CD-A4MI-01 9 32630586 32630586 C T TAF1L Silent p.Q1664Q 0.12 TCGA-CD-A4MI-01 9 32987827 32987827 G T APTX Silent p.T66T 0.18 TCGA-CD-A4MI-01 9 33294992 33294992 G A NFX1 Silent p.P200P 0.10 TCGA-CD-A4MI-01 9 33468168 33468168 C A NOL6 Intron 0.12 TCGA-CD-A4MI-01 9 34371970 34371970 G A KIAA1161 Silent p.Y290Y 0.10 TCGA-CD-A4MI-01 9 34521556 34521556 T C ENHO Silent p.E46E 0.14 TCGA-CD-A4MI-01 9 34976565 34976565 A G KIAA1045 Missense_Mutation p.Y226C 0.11 deleterious(0) possibly_damaging(0.89) TCGA-CD-A4MI-01 9 35547473 35547473 G A RUSC2 Missense_Mutation p.A319T 0.10 deleterious(0.05) benign(0.007) TCGA-CD-A4MI-01 9 35737772 35737772 G A GBA2 Silent p.Y826Y 0.10 TCGA-CD-A4MI-01 9 35751682 35751682 T C RGP1 Silent p.S231S 0.12 TCGA-CD-A4MI-01 9 36246267 36246267 A G GNE Missense_Mutation p.M157T 0.11 deleterious(0) probably_damaging(0.962) TCGA-CD-A4MI-01 9 37888456 37888456 A G SLC25A51 Missense_Mutation p.M31T 0.14 tolerated(0.36) benign(0.102) TCGA-CD-A4MI-01 9 72435828 72435828 G A C9orf135 Nonsense_Mutation p.W11* 0.15 TCGA-CD-A4MI-01 9 77354736 77354736 G A TRPM6 Missense_Mutation p.P1797L 0.19 tolerated(0.36) benign(0.126) TCGA-CD-A4MI-01 9 78947371 78947371 C T PCSK5 Silent p.C1504C 0.13 TCGA-CD-A4MI-01 9 79267433 79267433 G - PRUNE2 Frame_Shift_Del p.D2842Mfs*55 0.13 TCGA-CD-A4MI-01 9 79469112 79469112 G A PRUNE2 Missense_Mutation p.R17C 0.12 tolerated(0.12) benign(0.032) TCGA-CD-A4MI-01 9 84205815 84205815 G A TLE1 Silent p.Y578Y 0.09 TCGA-CD-A4MI-01 9 84605984 84605984 T C SPATA31D1 Missense_Mutation p.L200P 0.15 tolerated(0.1) probably_damaging(0.996) TCGA-CD-A4MI-01 9 94060317 94060317 C T AUH Missense_Mutation p.A183T 0.10 deleterious(0.01) probably_damaging(1) TCGA-CD-A4MI-01 9 95410357 95410357 A G IPPK Missense_Mutation p.M163T 0.13 deleterious(0) possibly_damaging(0.635) TCGA-CD-A4MI-01 9 990066 990066 C T DMRT3 Silent p.D160D 0.11 TCGA-CD-A4MI-01 9 99160514 99160514 C T ZNF367 Missense_Mutation p.R168H 0.13 deleterious(0) probably_damaging(0.988) TCGA-CD-A4MI-01 X 102005402 102005402 C T BHLHB9 Silent p.I493I 0.20 TCGA-CD-A4MI-01 X 103041549 103041549 C T PLP1 Missense_Mutation p.T116M 0.19 tolerated(0.38) probably_damaging(0.987) TCGA-CD-A4MI-01 X 103267317 103267317 A G H2BFWT Silent p.T165T 0.19 TCGA-CD-A4MI-01 X 105189887 105189887 C T NRK Silent p.D1362D 0.15 TCGA-CD-A4MI-01 X 106840635 106840635 G A FRMPD3 Missense_Mutation p.S542N 0.09 deleterious(0.02) possibly_damaging(0.493) TCGA-CD-A4MI-01 X 135958813 135958813 A G RBMX Silent p.D130D 0.20 TCGA-CD-A4MI-01 X 140994236 140994236 C T MAGEC1 Missense_Mutation p.T349I 0.24 deleterious_low_confidence(0.01) benign(0.005) TCGA-CD-A4MI-01 X 1413254 1413254 G A CSF2RA Missense_Mutation p.R227H 0.12 tolerated(0.63) benign(0.002) TCGA-CD-A4MI-01 X 1508411 1508411 C T SLC25A6 Silent p.T107T 0.10 TCGA-CD-A4MI-01 X 153670453 153670453 G A GDI1 Intron 0.28 TCGA-CD-A4MI-01 X 18259366 18259366 T - SCML2 3'UTR 0.24 TCGA-CD-A4MI-01 X 31196798 31196799 - C DMD Frame_Shift_Ins p.D3404Gfs*29 0.21 TCGA-CD-A4MI-01 X 40572274 40572274 G A MED14 Missense_Mutation p.R225C 0.16 deleterious(0.02) possibly_damaging(0.72) TCGA-CD-A4MI-01 X 48374500 48374500 G A PORCN Missense_Mutation p.R380Q 0.31 tolerated(0.16) benign(0.242) TCGA-CD-A4MI-01 X 53225096 53225096 A G KDM5C Splice_Site p.X1040_splice 0.33 TCGA-CD-A4MI-01 X 66905888 66905888 G A AR Missense_Mutation p.C602Y 0.26 deleterious(0) probably_damaging(0.991) TCGA-CD-A4MI-01 X 74273180 74273180 A - ABCB7 3'UTR 0.29 TCGA-CD-A4MI-01 X 75004754 75004754 G - MAGEE2 Frame_Shift_Del p.Q45Sfs*27 0.37 TCGA-CD-A4MI-01 X 77395140 77395142 GAG - TAF9B 5'UTR 0.25 TCGA-CD-A4MI-01 X 79978130 79978130 G A BRWD3 Missense_Mutation p.R603W 0.30 deleterious(0) probably_damaging(0.996) TCGA-CD-A4MI-01 X 83352808 83352808 C A RPS6KA6 Nonsense_Mutation p.G609* 0.21 TCGA-CD-A4MI-01 X 9864465 9864465 G A SHROOM2 Silent p.T839T 0.24 TCGA-CD-A4MI-01 Y 21869171 21869171 A T KDM5D Missense_Mutation p.D1287E 0.33 tolerated(1) benign(0.004) TCGA-CD-A4MI-01 Y 2713761 2713761 C T RPS4Y1 Missense_Mutation p.R113C 0.21 tolerated(0.14) benign(0.045) TCGA-CD-A4MI-01 Y 6954381 6954381 C A TBL1Y Missense_Mutation p.S401R 0.41 deleterious(0.04) benign(0.289) TCGA-CD-A4MJ-01 10 100021845 100021845 G - LOXL4 Frame_Shift_Del p.R135Gfs*40 0.24 TCGA-CD-A4MJ-01 10 102587338 102587338 G A PAX2 Missense_Mutation p.A406T 0.45 deleterious(0.01) unknown(0) TCGA-CD-A4MJ-01 10 102743278 102743278 A - SEMA4G Frame_Shift_Del p.N642Mfs*37 0.25 TCGA-CD-A4MJ-01 10 103190192 103190192 G A BTRC Missense_Mutation p.A47T 0.08 tolerated_low_confidence(0.19) benign(0.183) TCGA-CD-A4MJ-01 10 104414459 104414459 T C TRIM8 Missense_Mutation p.I207T 0.35 tolerated(0.07) possibly_damaging(0.704) TCGA-CD-A4MJ-01 10 111667488 111667488 C T XPNPEP1 Silent p.P69P 0.31 TCGA-CD-A4MJ-01 10 11207585 11207585 G A CELF2 Missense_Mutation p.G71R 0.37 deleterious(0) probably_damaging(1) TCGA-CD-A4MJ-01 10 114046093 114046093 G A TECTB Missense_Mutation p.V143M 0.34 deleterious(0) probably_damaging(1) TCGA-CD-A4MJ-01 10 114181725 114181725 G A ACSL5 Missense_Mutation p.A526T 0.25 tolerated(0.09) benign(0.008) TCGA-CD-A4MJ-01 10 116595908 116595908 T C FAM160B1 Missense_Mutation p.V142A 0.25 tolerated(0.19) possibly_damaging(0.585) TCGA-CD-A4MJ-01 10 118896070 118896070 C T VAX1 Silent p.R114R 0.41 TCGA-CD-A4MJ-01 10 120513954 120513954 G - CACUL1 Frame_Shift_Del p.T108Pfs*16 0.25 TCGA-CD-A4MJ-01 10 129901088 129901088 C T MKI67 Missense_Mutation p.V3006I 0.26 tolerated(0.74) benign(0.026) TCGA-CD-A4MJ-01 10 131639224 131639224 T C EBF3 Missense_Mutation p.N473S 0.08 tolerated_low_confidence(0.49) benign(0.004) TCGA-CD-A4MJ-01 10 134147117 134147117 C - LRRC27 Frame_Shift_Del p.S32Pfs*19 0.17 TCGA-CD-A4MJ-01 10 135084401 135084401 C A ADAM8 Missense_Mutation p.Q516H 0.49 deleterious(0.01) probably_damaging(0.952) TCGA-CD-A4MJ-01 10 14816403 14816403 C T FAM107B Missense_Mutation p.G87D 0.34 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CD-A4MJ-01 10 43869133 43869133 G A FXYD4 5'UTR 0.41 TCGA-CD-A4MJ-01 10 45941195 45941195 G A ALOX5 3'UTR 0.32 TCGA-CD-A4MJ-01 10 64573203 64573203 C T EGR2 Missense_Mutation p.A399T 0.26 deleterious(0.02) probably_damaging(0.948) TCGA-CD-A4MJ-01 10 64573574 64573574 C - EGR2 Frame_Shift_Del p.G275Afs*6 0.26 TCGA-CD-A4MJ-01 10 71690277 71690277 A - COL13A1 Frame_Shift_Del p.E543Rfs*51 0.33 TCGA-CD-A4MJ-01 10 72297653 72297653 T C PALD1 Silent p.L438L 0.35 TCGA-CD-A4MJ-01 10 73575010 73575010 C - CDH23 Frame_Shift_Del p.L1109Wfs*8 0.21 TCGA-CD-A4MJ-01 10 79581593 79581593 G T DLG5 Silent p.A883A 0.24 TCGA-CD-A4MJ-01 10 87966288 87966288 C T GRID1 Missense_Mutation p.R118H 0.29 deleterious(0) probably_damaging(0.998) TCGA-CD-A4MJ-01 10 88259565 88259565 T - WAPAL Frame_Shift_Del p.R479Efs*46 0.30 TCGA-CD-A4MJ-01 10 89487102 89487102 G A PAPSS2 Silent p.R314R 0.34 TCGA-CD-A4MJ-01 10 91503648 91503648 A T KIF20B Missense_Mutation p.E1293D 0.06 tolerated(0.15) benign(0.088) TCGA-CD-A4MJ-01 11 10523119 10523119 C T AMPD3 Silent p.H617H 0.21 TCGA-CD-A4MJ-01 11 105845045 105845045 G A GRIA4 Silent p.T806T 0.08 TCGA-CD-A4MJ-01 11 111953628 111953631 ACAA - C11orf57 Frame_Shift_Del p.K274Afs*6 0.35 TCGA-CD-A4MJ-01 11 116627916 116627916 G T BUD13 Missense_Mutation p.P571H 0.22 deleterious(0) probably_damaging(1) TCGA-CD-A4MJ-01 11 118014578 118014578 C T SCN4B Missense_Mutation p.A145T 0.19 deleterious(0.01) probably_damaging(0.996) TCGA-CD-A4MJ-01 11 118919812 118919812 G - HYOU1 Frame_Shift_Del p.P637Hfs*60 0.27 TCGA-CD-A4MJ-01 11 119998088 119998088 G A TRIM29 Missense_Mutation p.R364W 0.30 deleterious(0.03) probably_damaging(0.997) TCGA-CD-A4MJ-01 11 123811011 123811011 C T OR4D5 Missense_Mutation p.R230W 0.21 deleterious(0.01) benign(0.003) TCGA-CD-A4MJ-01 11 124252647 124252647 A G OR8B2 Missense_Mutation p.V198A 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.876) TCGA-CD-A4MJ-01 11 134118243 134118243 T A THYN1 3'UTR 0.30 TCGA-CD-A4MJ-01 11 13984526 13984526 G A SPON1 RNA 0.30 TCGA-CD-A4MJ-01 11 17793218 17793218 G A KCNC1 Missense_Mutation p.A193T 0.32 deleterious(0) probably_damaging(0.974) TCGA-CD-A4MJ-01 11 280967 280967 G A NLRP6 Silent p.T411T 0.42 TCGA-CD-A4MJ-01 11 45877621 45877621 G A CRY2 Missense_Mutation p.V123M 0.25 deleterious(0.01) possibly_damaging(0.782) TCGA-CD-A4MJ-01 11 45949132 45949132 A G GYLTL1B Missense_Mutation p.Y531C 0.25 deleterious(0) possibly_damaging(0.752) TCGA-CD-A4MJ-01 11 47296226 47296226 G A MADD Missense_Mutation p.E59K 0.34 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MJ-01 11 5364645 5364645 A G OR51B5 Missense_Mutation p.L37P 0.37 deleterious(0) probably_damaging(0.954) TCGA-CD-A4MJ-01 11 55861386 55861386 A G OR8I2 Silent p.L201L 0.08 TCGA-CD-A4MJ-01 11 56230421 56230421 C A OR5M9 Missense_Mutation p.V153F 0.37 tolerated(0.41) possibly_damaging(0.774) TCGA-CD-A4MJ-01 11 57367850 57367850 G A SERPING1 Missense_Mutation p.G184R 0.31 deleterious(0) probably_damaging(1) TCGA-CD-A4MJ-01 11 59189571 59189571 C T OR5A2 Missense_Mutation p.V286M 0.27 deleterious(0.02) benign(0.011) TCGA-CD-A4MJ-01 11 5968969 5968969 C T OR56A3 Silent p.C131C 0.31 TCGA-CD-A4MJ-01 11 60540898 60540898 G A MS4A15 Missense_Mutation p.V147I 0.15 tolerated(0.05) benign(0.007) TCGA-CD-A4MJ-01 11 60620602 60620602 C T PTGDR2 Silent p.T198T 0.27 TCGA-CD-A4MJ-01 11 6129639 6129639 G T OR56B4 Missense_Mutation p.V211F 0.22 tolerated(0.46) benign(0.013) TCGA-CD-A4MJ-01 11 61511088 61511088 G T DAGLA Missense_Mutation p.Q752H 0.24 deleterious_low_confidence(0.04) benign(0.087) TCGA-CD-A4MJ-01 11 6190659 6190659 G T OR52B2 Missense_Mutation p.Q300K 0.39 deleterious(0.04) benign(0.437) TCGA-CD-A4MJ-01 11 62289177 62289177 C T AHNAK Missense_Mutation p.A4238T 0.26 possibly_damaging(0.562) TCGA-CD-A4MJ-01 11 62380758 62380758 C T ROM1 Missense_Mutation p.A2V 0.60 deleterious_low_confidence(0) unknown(0) TCGA-CD-A4MJ-01 11 62520291 62520291 T C ZBTB3 Silent p.P332P 0.36 TCGA-CD-A4MJ-01 11 63594575 63594575 T C C11orf84 Silent p.T370T 0.33 TCGA-CD-A4MJ-01 11 64031188 64031188 C T PLCB3 Silent p.N827N 0.30 TCGA-CD-A4MJ-01 11 65063567 65063567 G A POLA2 Intron 0.22 TCGA-CD-A4MJ-01 11 65321752 65321752 G A LTBP3 Missense_Mutation p.A144V 0.14 tolerated(1) possibly_damaging(0.459) TCGA-CD-A4MJ-01 11 65634501 65634501 C - EFEMP2 Frame_Shift_Del p.G407Afs*14 0.27 TCGA-CD-A4MJ-01 11 66466164 66466164 C A SPTBN2 Missense_Mutation p.Q1320H 0.12 deleterious(0) probably_damaging(0.981) TCGA-CD-A4MJ-01 11 6647176 6647176 C A DCHS1 Missense_Mutation p.D2236Y 0.41 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MJ-01 11 67219919 67219919 G A GPR152 Missense_Mutation p.H93Y 0.38 tolerated(0.31) possibly_damaging(0.811) TCGA-CD-A4MJ-01 11 68747599 68747599 C A MRGPRD Missense_Mutation p.R286M 0.29 tolerated(0.18) possibly_damaging(0.864) TCGA-CD-A4MJ-01 11 70052405 70052406 AG - FADD Frame_Shift_Del p.K153Gfs*22 0.27 TCGA-CD-A4MJ-01 11 7022420 7022420 C - ZNF214 Frame_Shift_Del p.G165Afs*21 0.26 TCGA-CD-A4MJ-01 11 70333046 70333046 C T SHANK2 Missense_Mutation p.A1119T 0.26 tolerated(0.88) benign(0) TCGA-CD-A4MJ-01 11 74009285 74009285 A G P4HA3 Missense_Mutation p.L230S 0.26 deleterious(0) probably_damaging(0.998) TCGA-CD-A4MJ-01 11 76062943 76062943 T G PRKRIR Missense_Mutation p.K417N 0.37 tolerated(0.69) benign(0.001) TCGA-CD-A4MJ-01 11 78433794 78433794 T C TENM4 Missense_Mutation p.D1240G 0.26 deleterious(0) probably_damaging(0.993) TCGA-CD-A4MJ-01 11 88300371 88300371 G T GRM5 Missense_Mutation p.A827D 0.14 deleterious(0.02) probably_damaging(0.999) TCGA-CD-A4MJ-01 11 92624149 92624149 C T FAT3 Missense_Mutation p.S4547L 0.29 benign(0.295) TCGA-CD-A4MJ-01 11 94113840 94113840 G C GPR83 Missense_Mutation p.I249M 0.20 tolerated(0.26) benign(0.145) TCGA-CD-A4MJ-01 11 94602566 94602566 C T AMOTL1 Missense_Mutation p.R898W 0.37 deleterious(0) probably_damaging(0.924) TCGA-CD-A4MJ-01 12 103249064 103249064 T G PAH Missense_Mutation p.T186P 0.33 deleterious(0) probably_damaging(1) TCGA-CD-A4MJ-01 12 107393531 107393531 T G CRY1 Missense_Mutation p.N312T 0.24 deleterious(0.01) probably_damaging(1) TCGA-CD-A4MJ-01 12 108626520 108626520 T C WSCD2 Missense_Mutation p.M331T 0.27 tolerated(1) benign(0.159) TCGA-CD-A4MJ-01 12 109182492 109182492 G A SSH1 Nonsense_Mutation p.Q808* 0.34 TCGA-CD-A4MJ-01 12 109539760 109539760 C A UNG Missense_Mutation p.H163Q 0.27 deleterious(0) probably_damaging(1) TCGA-CD-A4MJ-01 12 110600774 110600774 G T IFT81 Missense_Mutation p.E364D 0.06 tolerated(0.21) benign(0.017) TCGA-CD-A4MJ-01 12 119592154 119592154 T A SRRM4 Missense_Mutation p.S500T 0.13 deleterious_low_confidence(0) probably_damaging(0.916) TCGA-CD-A4MJ-01 12 120954554 120954554 G A COQ5 Silent p.S130S 0.29 TCGA-CD-A4MJ-01 12 122657233 122657233 C A IL31 Missense_Mutation p.S74I 0.35 tolerated(0.2) benign(0) TCGA-CD-A4MJ-01 12 123087620 123087620 A - KNTC1 Frame_Shift_Del p.K1646Nfs*2 0.36 TCGA-CD-A4MJ-01 12 123214864 123214864 C T HCAR1 Missense_Mutation p.R8H 0.12 tolerated(0.39) benign(0) TCGA-CD-A4MJ-01 12 123875278 123875278 T C SETD8 Silent p.H78H 0.25 TCGA-CD-A4MJ-01 12 125451349 125451349 G A DHX37 Missense_Mutation p.A527V 0.31 tolerated(0.28) benign(0.037) TCGA-CD-A4MJ-01 12 125603191 125603191 G A AACS Missense_Mutation p.G334D 0.21 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MJ-01 12 130184705 130184705 G - TMEM132D Frame_Shift_Del p.T207Rfs*75 0.25 TCGA-CD-A4MJ-01 12 130929709 130929709 A T RIMBP2 Nonsense_Mutation p.Y212* 0.26 TCGA-CD-A4MJ-01 12 132334532 132334532 G A MMP17 Missense_Mutation p.G464S 0.24 deleterious(0.02) probably_damaging(0.989) TCGA-CD-A4MJ-01 12 132636060 132636060 G A NOC4L Missense_Mutation p.A369T 0.36 tolerated(0.25) benign(0.089) TCGA-CD-A4MJ-01 12 133240978 133240978 G A POLE Missense_Mutation p.R847W 0.06 deleterious(0) probably_damaging(0.998) TCGA-CD-A4MJ-01 12 133372463 133372463 T C GOLGA3 Missense_Mutation p.E815G 0.31 deleterious(0) benign(0.273) TCGA-CD-A4MJ-01 12 19475256 19475256 C T PLEKHA5 Nonsense_Mutation p.R744* 0.23 TCGA-CD-A4MJ-01 12 21630862 21630862 C T RECQL Missense_Mutation p.A248T 0.36 tolerated(0.38) benign(0.005) TCGA-CD-A4MJ-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.28 deleterious(0) benign(0.361) TCGA-CD-A4MJ-01 12 2675632 2675632 G A CACNA1C Missense_Mutation p.R518H 0.29 tolerated(0.13) possibly_damaging(0.774) TCGA-CD-A4MJ-01 12 41582530 41582530 G A PDZRN4 Silent p.S91S 0.29 TCGA-CD-A4MJ-01 12 42481685 42481686 - T GXYLT1 Frame_Shift_Ins p.T409Nfs*70 0.25 TCGA-CD-A4MJ-01 12 45168556 45168556 T C NELL2 Missense_Mutation p.D373G 0.25 tolerated(0.15) possibly_damaging(0.856) TCGA-CD-A4MJ-01 12 49391874 49391874 G A DDN Missense_Mutation p.A262V 0.32 tolerated_low_confidence(0.08) benign(0.068) TCGA-CD-A4MJ-01 12 49435457 49435457 C T KMT2D Missense_Mutation p.R2072H 0.14 probably_damaging(0.998) TCGA-CD-A4MJ-01 12 49948320 49948320 G - KCNH3 Frame_Shift_Del p.G708Efs*11 0.19 TCGA-CD-A4MJ-01 12 50025258 50025258 C - PRPF40B Frame_Shift_Del p.M56Cfs*29 0.28 TCGA-CD-A4MJ-01 12 50472315 50472315 C T ASIC1 Missense_Mutation p.R317C 0.34 deleterious(0) possibly_damaging(0.793) TCGA-CD-A4MJ-01 12 52714736 52714736 C A KRT83 Missense_Mutation p.K128N 0.38 deleterious(0) probably_damaging(0.968) TCGA-CD-A4MJ-01 12 53207948 53207948 C T KRT4 5'UTR 0.34 TCGA-CD-A4MJ-01 12 54911711 54911711 G A NCKAP1L Missense_Mutation p.D443N 0.33 tolerated(0.17) benign(0.158) TCGA-CD-A4MJ-01 12 56514888 56514888 T C ZC3H10 Missense_Mutation p.V181A 0.40 tolerated(0.51) benign(0) TCGA-CD-A4MJ-01 12 56817448 56817448 C T TIMELESS Silent p.E670E 0.22 TCGA-CD-A4MJ-01 12 57485177 57485177 C A NAB2 Missense_Mutation p.P118H 0.37 deleterious(0.03) possibly_damaging(0.827) TCGA-CD-A4MJ-01 12 57627591 57627591 C T SHMT2 Missense_Mutation p.R395W 0.10 deleterious(0) probably_damaging(1) TCGA-CD-A4MJ-01 12 57919678 57919678 G A MBD6 Silent p.T309T 0.43 TCGA-CD-A4MJ-01 12 64664463 64664463 A G C12orf56 Missense_Mutation p.V379A 0.29 tolerated(0.11) benign(0.234) TCGA-CD-A4MJ-01 12 66357077 66357077 C G HMGA2 3'UTR 0.24 TCGA-CD-A4MJ-01 12 6700658 6700658 C T CHD4 Missense_Mutation p.R1105Q 0.34 deleterious(0) possibly_damaging(0.857) TCGA-CD-A4MJ-01 12 68642497 68642497 A - IL22 3'UTR 0.35 TCGA-CD-A4MJ-01 12 7242010 7242010 G - C1R Frame_Shift_Del p.P215Lfs*100 0.23 TCGA-CD-A4MJ-01 12 8212438 8212438 G A C3AR1 Missense_Mutation p.A115V 0.29 tolerated(0.11) possibly_damaging(0.467) TCGA-CD-A4MJ-01 12 95228799 95228799 C T MIR492 3'Flank 0.20 TCGA-CD-A4MJ-01 12 95486597 95486599 CTT - FGD6 In_Frame_Del p.E1208del 0.39 TCGA-CD-A4MJ-01 13 103419821 103419821 T C TEX30 Silent p.S102S 0.34 TCGA-CD-A4MJ-01 13 111077209 111077209 C T COL4A2 Silent p.G103G 0.05 TCGA-CD-A4MJ-01 13 114762186 114762186 C T RASA3 Silent p.A654A 0.33 TCGA-CD-A4MJ-01 13 21371027 21371027 A - XPO4 Frame_Shift_Del p.L831* 0.19 TCGA-CD-A4MJ-01 13 25425604 25425604 C T RNF17 Missense_Mutation p.T1072I 0.07 deleterious(0.04) probably_damaging(0.969) TCGA-CD-A4MJ-01 13 25444862 25444862 A G RNF17 Missense_Mutation p.T1478A 0.33 deleterious(0) probably_damaging(0.973) TCGA-CD-A4MJ-01 13 32937540 32937540 C A BRCA2 Missense_Mutation p.P2734H 0.05 deleterious(0) probably_damaging(0.977) TCGA-CD-A4MJ-01 13 33017576 33017577 - A N4BP2L2 Frame_Shift_Ins p.T367Hfs*6 0.22 TCGA-CD-A4MJ-01 13 36909263 36909263 A T SPG20 Silent p.P235P 0.05 TCGA-CD-A4MJ-01 13 37567776 37567776 C T ALG5 Missense_Mutation p.V107I 0.29 tolerated(0.4) benign(0.098) TCGA-CD-A4MJ-01 13 46543969 46543969 G A ZC3H13 Missense_Mutation p.R904C 0.09 unknown(0) TCGA-CD-A4MJ-01 13 52332350 52332350 C T WDFY2 Missense_Mutation p.H363Y 0.08 tolerated(0.1) probably_damaging(0.992) TCGA-CD-A4MJ-01 13 79189633 79189633 A G RNF219 3'UTR 0.38 TCGA-CD-A4MJ-01 13 84455330 84455331 - C SLITRK1 Frame_Shift_Ins p.L105Afs*34 0.27 TCGA-CD-A4MJ-01 13 86368589 86368589 G - SLITRK6 Frame_Shift_Del p.M686Wfs*50 0.27 TCGA-CD-A4MJ-01 13 96536889 96536889 A T UGGT2 Missense_Mutation p.N1028K 0.44 deleterious(0.03) benign(0.068) TCGA-CD-A4MJ-01 14 103988703 103988703 C T CKB Missense_Mutation p.R43H 0.19 tolerated(0.1) benign(0.19) TCGA-CD-A4MJ-01 14 105411498 105411498 A G AHNAK2 Silent p.P3430P 0.31 TCGA-CD-A4MJ-01 14 105617714 105617714 C T JAG2 Silent p.S391S 0.31 TCGA-CD-A4MJ-01 14 106321084 106321084 G A IGHM Missense_Mutation p.T302M 0.09 deleterious(0.04) benign(0.126) TCGA-CD-A4MJ-01 14 106586401 106586401 T C IGHV3-13 Silent p.G28G 0.30 TCGA-CD-A4MJ-01 14 107218790 107218790 G A IGHV3-74 Silent p.Y79Y 0.30 TCGA-CD-A4MJ-01 14 19553819 19553819 G A POTEG Missense_Mutation p.V135I 0.15 tolerated(0.82) benign(0.013) TCGA-CD-A4MJ-01 14 21543327 21543327 C T ARHGEF40 Silent p.L480L 0.35 TCGA-CD-A4MJ-01 14 21876597 21876597 C T CHD8 Silent p.L868L 0.24 TCGA-CD-A4MJ-01 14 23855225 23855225 G A MYH6 Missense_Mutation p.A1692V 0.25 tolerated(0.1) benign(0.2) TCGA-CD-A4MJ-01 14 24647332 24647332 C T REC8 Silent p.R299R 0.25 TCGA-CD-A4MJ-01 14 24679671 24679671 G T CHMP4A Missense_Mutation p.L208I 0.03 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MJ-01 14 31590658 31590658 C T HECTD1 Silent p.T1723T 0.38 TCGA-CD-A4MJ-01 14 36988386 36988386 C T NKX2-1 Silent p.G89G 0.33 TCGA-CD-A4MJ-01 14 38061194 38061194 G T FOXA1 Silent p.R265R 0.31 TCGA-CD-A4MJ-01 14 39650346 39650346 C A PNN Missense_Mutation p.P478H 0.33 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-CD-A4MJ-01 14 51224807 51224807 G A NIN Nonsense_Mutation p.Q981* 0.34 TCGA-CD-A4MJ-01 14 51561516 51561516 G - TRIM9 Frame_Shift_Del p.Q48Rfs*21 0.37 TCGA-CD-A4MJ-01 14 52507378 52507378 A G NID2 Missense_Mutation p.S673P 0.29 tolerated(0.05) possibly_damaging(0.619) TCGA-CD-A4MJ-01 14 58814451 58814451 A - ARID4A Frame_Shift_Del p.D423Tfs*2 0.29 TCGA-CD-A4MJ-01 14 59112582 59112582 C A DACT1 Missense_Mutation p.S414Y 0.23 deleterious(0) probably_damaging(0.967) TCGA-CD-A4MJ-01 14 59787235 59787237 GAA - DAAM1 In_Frame_Del p.E129del 0.25 TCGA-CD-A4MJ-01 14 64692209 64692209 A G SYNE2 Missense_Mutation p.M6897V 0.33 probably_damaging(0.992) TCGA-CD-A4MJ-01 14 64735545 64735545 C T ESR2 Missense_Mutation p.R207Q 0.29 deleterious(0) benign(0.316) TCGA-CD-A4MJ-01 14 73958571 73958571 G A HEATR4 Intron 0.21 TCGA-CD-A4MJ-01 14 73958594 73958594 G T HEATR4 Intron 0.33 TCGA-CD-A4MJ-01 14 74179511 74179512 TC - PNMA1 Frame_Shift_Del p.K278Gfs*4 0.23 TCGA-CD-A4MJ-01 14 74489628 74489628 A - CCDC176 Frame_Shift_Del p.T24Qfs*44 0.30 TCGA-CD-A4MJ-01 14 76905939 76905939 C T ESRRB Silent p.S81S 0.39 TCGA-CD-A4MJ-01 14 77787059 77787059 G T POMT2 5'UTR 0.25 TCGA-CD-A4MJ-01 14 91806315 91806315 G A CCDC88C Silent p.D179D 0.21 TCGA-CD-A4MJ-01 14 91925064 91925064 T - SMEK1 3'UTR 0.19 TCGA-CD-A4MJ-01 15 100340005 100340005 G A DNM1P46 RNA 0.35 TCGA-CD-A4MJ-01 15 20642609 20642609 T C HERC2P3 RNA 0.16 TCGA-CD-A4MJ-01 15 24922567 24922567 C A NPAP1 Missense_Mutation p.S518Y 0.28 deleterious(0) benign(0.362) TCGA-CD-A4MJ-01 15 31332426 31332426 G A TRPM1 Silent p.A754A 0.32 TCGA-CD-A4MJ-01 15 34014966 34014966 C T RYR3 Missense_Mutation p.R2224C 0.27 probably_damaging(0.996) TCGA-CD-A4MJ-01 15 38786599 38786599 T C RASGRP1 Missense_Mutation p.Y748C 0.46 tolerated_low_confidence(0.06) benign(0.019) TCGA-CD-A4MJ-01 15 40659315 40659315 C T DISP2 Silent p.C334C 0.29 TCGA-CD-A4MJ-01 15 41191837 41191837 C - VPS18 Frame_Shift_Del p.K276Sfs*12 0.31 TCGA-CD-A4MJ-01 15 41228465 41228465 G A DLL4 Missense_Mutation p.R427H 0.19 deleterious(0.03) probably_damaging(0.993) TCGA-CD-A4MJ-01 15 43044962 43044962 T - TTBK2 Frame_Shift_Del p.T828Hfs*16 0.13 TCGA-CD-A4MJ-01 15 43990261 43990261 G A CKMT1A Missense_Mutation p.R309H 0.32 tolerated(1) benign(0.018) TCGA-CD-A4MJ-01 15 45401049 45401049 G A DUOX2 Silent p.L446L 0.30 TCGA-CD-A4MJ-01 15 52161562 52161562 A - TMOD3 Frame_Shift_Del p.I97Yfs*23 0.32 TCGA-CD-A4MJ-01 15 52689609 52689609 C T MYO5A Missense_Mutation p.E370K 0.15 tolerated(0.18) possibly_damaging(0.595) TCGA-CD-A4MJ-01 15 56125274 56125275 - T NEDD4 Frame_Shift_Ins p.R1167Kfs*21 0.24 TCGA-CD-A4MJ-01 15 59191666 59191666 A G SLTM Splice_Site p.X353_splice 0.30 TCGA-CD-A4MJ-01 15 60760424 60760424 T G NARG2 Missense_Mutation p.I82L 0.28 tolerated(0.16) benign(0.008) TCGA-CD-A4MJ-01 15 67073530 67073530 C T SMAD6 Missense_Mutation p.T383M 0.31 deleterious(0.02) probably_damaging(0.994) TCGA-CD-A4MJ-01 15 68099132 68099132 G C MAP2K5 3'UTR 0.31 TCGA-CD-A4MJ-01 15 73889460 73889460 G A NPTN Silent p.Y114Y 0.31 TCGA-CD-A4MJ-01 15 74836313 74836313 G A ARID3B Silent p.Q12Q 0.41 TCGA-CD-A4MJ-01 15 78921565 78921565 G A CHRNB4 Missense_Mutation p.P361L 0.21 tolerated(0.45) benign(0.002) TCGA-CD-A4MJ-01 15 79186547 79186547 A G MORF4L1 Silent p.G298G 0.28 TCGA-CD-A4MJ-01 15 79749633 79749633 T C KIAA1024 Missense_Mutation p.S382P 0.43 tolerated(0.3) probably_damaging(0.998) TCGA-CD-A4MJ-01 15 83795547 83795547 C T TM6SF1 Missense_Mutation p.T250M 0.06 deleterious(0.02) benign(0.271) TCGA-CD-A4MJ-01 15 83820028 83820028 C A HDGFRP3 Missense_Mutation p.G182V 0.07 deleterious_low_confidence(0.01) benign(0.007) TCGA-CD-A4MJ-01 15 85383910 85383910 C T ALPK3 Missense_Mutation p.T669I 0.28 tolerated_low_confidence(0.22) benign(0.007) TCGA-CD-A4MJ-01 15 89744951 89744951 G A ABHD2 3'UTR 0.04 TCGA-CD-A4MJ-01 15 91420789 91420789 C T FURIN Missense_Mutation p.A204V 0.23 deleterious(0) probably_damaging(0.976) TCGA-CD-A4MJ-01 15 91433451 91433451 C T FES Silent p.P393P 0.27 TCGA-CD-A4MJ-01 15 94945156 94945156 A - MCTP2 Frame_Shift_Del p.R666Efs*23 0.23 TCGA-CD-A4MJ-01 15 98982885 98982885 C A FAM169B Missense_Mutation p.G185V 0.32 deleterious_low_confidence(0) benign(0.091) TCGA-CD-A4MJ-01 16 10631802 10631802 A G EMP2 Missense_Mutation p.I100T 0.30 tolerated(0.1) benign(0.124) TCGA-CD-A4MJ-01 16 112548 112548 C T RHBDF1 Missense_Mutation p.S314N 0.04 tolerated(0.23) benign(0.045) TCGA-CD-A4MJ-01 16 129486 129486 G A MPG Silent p.S34S 0.28 TCGA-CD-A4MJ-01 16 1412689 1412689 G A GNPTG Silent p.Q229Q 0.32 TCGA-CD-A4MJ-01 16 18865138 18865138 C T SMG1 Missense_Mutation p.C1512Y 0.39 deleterious(0.05) probably_damaging(0.974) TCGA-CD-A4MJ-01 16 19126606 19126606 C T ITPRIPL2 Missense_Mutation p.R275W 0.35 deleterious(0) probably_damaging(0.973) TCGA-CD-A4MJ-01 16 20559759 20559759 C T ACSM2B Missense_Mutation p.A311T 0.29 tolerated(0.06) probably_damaging(0.934) TCGA-CD-A4MJ-01 16 21080738 21080738 C A DNAH3 Missense_Mutation p.A1127S 0.21 tolerated(0.13) benign(0.078) TCGA-CD-A4MJ-01 16 2223817 2223817 T C TRAF7 Missense_Mutation p.L372P 0.32 deleterious(0.02) probably_damaging(0.94) TCGA-CD-A4MJ-01 16 2239256 2239256 C T CASKIN1 Missense_Mutation p.E157K 0.22 possibly_damaging(0.719) TCGA-CD-A4MJ-01 16 22926629 22926629 G A HS3ST2 Missense_Mutation p.E284K 0.26 deleterious(0.01) probably_damaging(0.996) TCGA-CD-A4MJ-01 16 2578618 2578619 - C AMDHD2 Frame_Shift_Ins p.R346Qfs*56 0.26 TCGA-CD-A4MJ-01 16 27788937 27788937 G A KIAA0556 Missense_Mutation p.V1520M 0.39 deleterious(0) probably_damaging(1) TCGA-CD-A4MJ-01 16 28331595 28331595 G A SBK1 Missense_Mutation p.G210S 0.50 deleterious(0.01) possibly_damaging(0.701) TCGA-CD-A4MJ-01 16 2835834 2835834 G - PRSS33 Frame_Shift_Del p.Q70Sfs*4 0.29 TCGA-CD-A4MJ-01 16 28846491 28846491 C - ATXN2L Frame_Shift_Del p.Q851Kfs*69 0.27 TCGA-CD-A4MJ-01 16 28993747 28993747 C T SPNS1 Missense_Mutation p.R346W 0.11 tolerated(0.24) benign(0.047) TCGA-CD-A4MJ-01 16 29841900 29841900 C - MVP Frame_Shift_Del p.P12Hfs*40 0.20 TCGA-CD-A4MJ-01 16 29998848 29998848 G A TAOK2 Nonsense_Mutation p.W1085* 0.32 TCGA-CD-A4MJ-01 16 30036939 30036939 T C FAM57B Intron 0.36 TCGA-CD-A4MJ-01 16 30794491 30794491 G A ZNF629 Silent p.S386S 0.32 TCGA-CD-A4MJ-01 16 31097488 31097488 G - PRSS53 Frame_Shift_Del p.P227Lfs*32 0.22 TCGA-CD-A4MJ-01 16 31142542 31142542 C - KAT8 3'UTR 0.26 TCGA-CD-A4MJ-01 16 31473647 31473647 G A ARMC5 Missense_Mutation p.R260H 0.29 deleterious(0) probably_damaging(0.991) TCGA-CD-A4MJ-01 16 33020931 33020931 T A IGHV3OR16-8 Nonsense_Mutation p.Y113* 0.29 TCGA-CD-A4MJ-01 16 3656526 3656526 G A SLX4 Missense_Mutation p.R237W 0.05 deleterious(0.03) benign(0.015) TCGA-CD-A4MJ-01 16 3778387 3778387 T C CREBBP Missense_Mutation p.M2221V 0.26 unknown(0) TCGA-CD-A4MJ-01 16 426666 426666 G C TMEM8A Missense_Mutation p.A261G 0.18 tolerated(0.42) benign(0.001) TCGA-CD-A4MJ-01 16 50338447 50338447 C T ADCY7 Silent p.N515N 0.26 TCGA-CD-A4MJ-01 16 5038171 5038171 G A SEC14L5 Missense_Mutation p.V79I 0.32 tolerated(0.15) benign(0.032) TCGA-CD-A4MJ-01 16 53243458 53243458 G T CHD9 Missense_Mutation p.R506M 0.15 possibly_damaging(0.763) TCGA-CD-A4MJ-01 16 614093 614093 C T C16orf11 Missense_Mutation p.P267S 0.27 deleterious(0) probably_damaging(1) TCGA-CD-A4MJ-01 16 632963 632963 C T PIGQ Missense_Mutation p.R538C 0.32 deleterious_low_confidence(0.01) benign(0.078) TCGA-CD-A4MJ-01 16 67201666 67201666 G - HSF4 Frame_Shift_Del p.D302Mfs*17 0.35 TCGA-CD-A4MJ-01 16 677527 677527 G A RAB40C Missense_Mutation p.G251S 0.07 tolerated_low_confidence(0.6) benign(0.008) TCGA-CD-A4MJ-01 16 68289217 68289217 G A PLA2G15 Missense_Mutation p.V146M 0.42 deleterious(0) probably_damaging(0.937) TCGA-CD-A4MJ-01 16 701719 701719 C A WDR90 Missense_Mutation p.P271Q 0.11 tolerated(0.37) benign(0.289) TCGA-CD-A4MJ-01 16 77326974 77326974 T C ADAMTS18 Missense_Mutation p.E1063G 0.30 deleterious(0) probably_damaging(0.975) TCGA-CD-A4MJ-01 16 815536 815536 G A MSLN Silent p.S238S 0.31 TCGA-CD-A4MJ-01 16 84183889 84183889 G C DNAAF1 Missense_Mutation p.K98N 0.08 deleterious(0) probably_damaging(0.984) TCGA-CD-A4MJ-01 16 849007 849007 C T GNG13 Missense_Mutation p.R24Q 0.30 deleterious(0) probably_damaging(0.968) TCGA-CD-A4MJ-01 16 87445525 87445525 G A ZCCHC14 Silent p.C797C 0.22 TCGA-CD-A4MJ-01 16 89598886 89598886 G - SPG7 Frame_Shift_Del p.R389Lfs*50 0.28 TCGA-CD-A4MJ-01 16 9934526 9934526 G A GRIN2A Silent p.T543T 0.32 TCGA-CD-A4MJ-01 17 10346710 10346710 T A MYH4 Missense_Mutation p.K1934N 0.34 deleterious_low_confidence(0) possibly_damaging(0.794) TCGA-CD-A4MJ-01 17 10532982 10532982 G A MYH3 Missense_Mutation p.R1910C 0.36 deleterious(0) probably_damaging(0.996) TCGA-CD-A4MJ-01 17 1442213 1442213 C T PITPNA Missense_Mutation p.V136M 0.35 tolerated(0.07) probably_damaging(1) TCGA-CD-A4MJ-01 17 16467045 16467045 G A ZNF287 Missense_Mutation p.T199M 0.29 tolerated(0.48) probably_damaging(0.998) TCGA-CD-A4MJ-01 17 19999968 19999968 C T SPECC1 Missense_Mutation p.R2W 0.27 deleterious_low_confidence(0) possibly_damaging(0.875) TCGA-CD-A4MJ-01 17 20013849 20013849 C T SPECC1 Missense_Mutation p.T86M 0.31 deleterious(0.01) possibly_damaging(0.514) TCGA-CD-A4MJ-01 17 21203933 21203933 T C MAP2K3 Missense_Mutation p.V81A 0.39 deleterious(0) benign(0.075) TCGA-CD-A4MJ-01 17 2594035 2594035 C T CLUH Silent p.A1261A 0.08 TCGA-CD-A4MJ-01 17 26696773 26696773 C - VTN Frame_Shift_Del p.G95Afs*4 0.22 TCGA-CD-A4MJ-01 17 27028588 27028588 C - SUPT6H Frame_Shift_Del p.M1711Cfs*51 0.22 TCGA-CD-A4MJ-01 17 30687623 30687623 A G ZNF207 Missense_Mutation p.Q105R 0.27 tolerated(0.06) benign(0.005) TCGA-CD-A4MJ-01 17 31048195 31048195 C T MYO1D Missense_Mutation p.V587I 0.30 tolerated(0.25) possibly_damaging(0.595) TCGA-CD-A4MJ-01 17 33591296 33591296 G A SLFN5 Missense_Mutation p.M411I 0.20 tolerated(0.28) benign(0.005) TCGA-CD-A4MJ-01 17 36482500 36482500 G T GPR179 Missense_Mutation p.L2318I 0.31 tolerated_low_confidence(0.23) possibly_damaging(0.608) TCGA-CD-A4MJ-01 17 36484966 36484966 C A GPR179 Missense_Mutation p.G1496W 0.36 deleterious(0) probably_damaging(0.988) TCGA-CD-A4MJ-01 17 37898611 37898611 A G GRB7 Silent p.P42P 0.39 TCGA-CD-A4MJ-01 17 43196353 43196353 G A PLCD3 Missense_Mutation p.R248W 0.15 deleterious(0) probably_damaging(0.944) TCGA-CD-A4MJ-01 17 49270274 49270274 C T MBTD1 Missense_Mutation p.R520H 0.30 deleterious(0) probably_damaging(0.998) TCGA-CD-A4MJ-01 17 57165734 57165734 G A TRIM37 Missense_Mutation p.R67C 0.20 deleterious(0) probably_damaging(0.995) TCGA-CD-A4MJ-01 17 57189649 57189649 G A SKA2 Missense_Mutation p.P119S 0.27 tolerated(0.35) benign(0.015) TCGA-CD-A4MJ-01 17 57290392 57290392 C T SMG8 Silent p.F736F 0.07 TCGA-CD-A4MJ-01 17 58539239 58539239 T C APPBP2 Missense_Mutation p.T290A 0.31 tolerated(0.56) benign(0.001) TCGA-CD-A4MJ-01 17 59155774 59155774 A G BCAS3 Silent p.S752S 0.30 TCGA-CD-A4MJ-01 17 59560530 59560530 G A TBX4 Missense_Mutation p.V431M 0.33 tolerated(0.12) benign(0.075) TCGA-CD-A4MJ-01 17 61771161 61771161 G A MAP3K3 3'UTR 0.32 TCGA-CD-A4MJ-01 17 61907223 61907223 C T PSMC5 Missense_Mutation p.R60W 0.29 deleterious(0) possibly_damaging(0.88) TCGA-CD-A4MJ-01 17 67013900 67013900 A C ABCA9 Missense_Mutation p.L933R 0.24 deleterious(0) probably_damaging(0.968) TCGA-CD-A4MJ-01 17 7348741 7348741 G - CHRNB1 Intron 0.28 TCGA-CD-A4MJ-01 17 74072932 74072932 G A GALR2 Missense_Mutation p.S195N 0.35 deleterious(0) probably_damaging(0.934) TCGA-CD-A4MJ-01 17 74473082 74473082 G A RHBDF2 Silent p.V344V 0.33 TCGA-CD-A4MJ-01 17 7612702 7612702 G - EFNB3 Frame_Shift_Del p.G279Vfs*15 0.16 TCGA-CD-A4MJ-01 17 76167919 76167919 G A SYNGR2 Missense_Mutation p.A193T 0.41 tolerated(0.61) benign(0.007) TCGA-CD-A4MJ-01 17 76831482 76831482 G A USP36 Missense_Mutation p.R119C 0.20 deleterious(0) probably_damaging(1) TCGA-CD-A4MJ-01 17 78055376 78055376 G A CCDC40 Missense_Mutation p.G532S 0.43 tolerated(0.71) benign(0.001) TCGA-CD-A4MJ-01 17 79108177 79108177 G A AATK Silent p.I60I 0.29 TCGA-CD-A4MJ-01 17 79983283 79983283 G - LRRC45 Frame_Shift_Del p.G189Afs*5 0.19 TCGA-CD-A4MJ-01 17 80195528 80195528 C T SLC16A3 Silent p.S294S 0.31 TCGA-CD-A4MJ-01 17 8219155 8219155 G T ARHGEF15 Missense_Mutation p.G502W 0.21 deleterious(0) probably_damaging(0.997) TCGA-CD-A4MJ-01 17 8243654 8243654 A T ODF4 Silent p.L95L 0.52 TCGA-CD-A4MJ-01 18 14106215 14106215 A G ZNF519 Silent p.S108S 0.26 TCGA-CD-A4MJ-01 18 21053585 21053585 C T RIOK3 Silent p.L336L 0.23 TCGA-CD-A4MJ-01 18 21426421 21426421 C T LAMA3 Missense_Mutation p.R1294W 0.24 probably_damaging(0.995) TCGA-CD-A4MJ-01 18 29101199 29101199 T C DSG2 Silent p.S172S 0.22 TCGA-CD-A4MJ-01 18 29784177 29784177 G A MEP1B Missense_Mutation p.G134E 0.44 deleterious(0) probably_damaging(1) TCGA-CD-A4MJ-01 18 33694292 33694292 C A SLC39A6 Missense_Mutation p.K537N 0.06 deleterious(0.02) possibly_damaging(0.665) TCGA-CD-A4MJ-01 18 3452124 3452124 C A TGIF1 Silent p.S49S 0.33 TCGA-CD-A4MJ-01 18 39629562 39629562 A - PIK3C3 Frame_Shift_Del p.T754Qfs*7 0.34 TCGA-CD-A4MJ-01 18 44272146 44272146 C T ST8SIA5 Silent p.E99E 0.26 TCGA-CD-A4MJ-01 18 47803200 47803200 A G MBD1 Splice_Site p.X131_splice 0.22 TCGA-CD-A4MJ-01 18 54814902 54814902 G C BOD1L2 Missense_Mutation p.S120T 0.28 deleterious(0.02) benign(0.006) TCGA-CD-A4MJ-01 18 55103659 55103659 C T ONECUT2 Silent p.G237G 0.29 TCGA-CD-A4MJ-01 18 683370 683370 G C ENOSF1 Missense_Mutation p.A272G 0.18 deleterious(0) probably_damaging(0.971) TCGA-CD-A4MJ-01 18 71796740 71796740 A G FBXO15 Missense_Mutation p.Y229H 0.43 tolerated(0.16) benign(0.035) TCGA-CD-A4MJ-01 18 908355 908355 G A ADCYAP1 Missense_Mutation p.R111Q 0.20 tolerated(0.14) benign(0.001) TCGA-CD-A4MJ-01 19 10368906 10368906 G A MRPL4 Missense_Mutation p.A152T 0.11 deleterious(0.01) probably_damaging(0.955) TCGA-CD-A4MJ-01 19 10419286 10419286 G - ZGLP1 Frame_Shift_Del p.W25Gfs*107 0.25 TCGA-CD-A4MJ-01 19 10794602 10794602 A G ILF3 Missense_Mutation p.Y676C 0.29 deleterious(0.01) unknown(0) TCGA-CD-A4MJ-01 19 11505106 11505106 C T RGL3 Missense_Mutation p.R708Q 0.32 tolerated(0.36) unknown(0) TCGA-CD-A4MJ-01 19 12978559 12978559 G A MAST1 Silent p.A778A 0.25 TCGA-CD-A4MJ-01 19 13882968 13882968 C - MRI1 Frame_Shift_Del p.H330Tfs*24 0.28 TCGA-CD-A4MJ-01 19 14288489 14288489 G A LPHN1 Silent p.I46I 0.35 TCGA-CD-A4MJ-01 19 15905455 15905455 C T OR10H5 Silent p.G199G 0.05 TCGA-CD-A4MJ-01 19 1599523 1599523 G A UQCR11 Silent p.A29A 0.28 TCGA-CD-A4MJ-01 19 17488022 17488022 G A PLVAP Missense_Mutation p.R26C 0.31 deleterious(0) probably_damaging(0.994) TCGA-CD-A4MJ-01 19 17651282 17651282 G A FAM129C Missense_Mutation p.R385H 0.15 tolerated(0.17) benign(0.332) TCGA-CD-A4MJ-01 19 19369359 19369359 C T HAPLN4 Missense_Mutation p.A264T 0.07 tolerated(0.05) possibly_damaging(0.878) TCGA-CD-A4MJ-01 19 19390193 19390193 G A SUGP1 Nonsense_Mutation p.Q453* 0.36 TCGA-CD-A4MJ-01 19 19745639 19745639 G T GMIP Missense_Mutation p.H617N 0.07 deleterious(0) probably_damaging(1) TCGA-CD-A4MJ-01 19 1986373 1986373 C T BTBD2 3'UTR 0.26 TCGA-CD-A4MJ-01 19 20011862 20011862 C A ZNF93 5'Flank 0.05 TCGA-CD-A4MJ-01 19 21991363 21991363 G A ZNF43 Silent p.S492S 0.22 TCGA-CD-A4MJ-01 19 30164800 30164800 G T PLEKHF1 Silent p.V18V 0.29 TCGA-CD-A4MJ-01 19 30165237 30165237 C T PLEKHF1 Missense_Mutation p.T164M 0.38 deleterious(0.03) probably_damaging(0.991) TCGA-CD-A4MJ-01 19 30503219 30503219 A T URI1 Missense_Mutation p.E402D 0.25 deleterious(0.01) probably_damaging(0.968) TCGA-CD-A4MJ-01 19 30935268 30935268 G A ZNF536 Missense_Mutation p.A267T 0.41 tolerated(0.26) benign(0.002) TCGA-CD-A4MJ-01 19 31025794 31025794 A G ZNF536 Silent p.Q737Q 0.03 TCGA-CD-A4MJ-01 19 3110205 3110205 C T GNA11 Silent p.A65A 0.15 TCGA-CD-A4MJ-01 19 3613305 3613305 C T CACTIN Missense_Mutation p.A513T 0.36 tolerated(0.57) benign(0.007) TCGA-CD-A4MJ-01 19 36211899 36211899 C - KMT2B Frame_Shift_Del p.K553Nfs*52 0.38 TCGA-CD-A4MJ-01 19 3623941 3623941 C T CACTIN Silent p.A129A 0.30 TCGA-CD-A4MJ-01 19 36246756 36246756 C T HSPB6 Missense_Mutation p.V80M 0.33 deleterious(0.02) probably_damaging(0.997) TCGA-CD-A4MJ-01 19 36340035 36340035 C T NPHS1 Silent p.V285V 0.31 TCGA-CD-A4MJ-01 19 39125835 39125835 G T EIF3K Intron 0.06 TCGA-CD-A4MJ-01 19 39515977 39515977 T C FBXO27 3'UTR 0.37 TCGA-CD-A4MJ-01 19 39914638 39914638 G A PLEKHG2 Silent p.L955L 0.46 TCGA-CD-A4MJ-01 19 42410639 42410639 C T ARHGEF1 Missense_Mutation p.A856V 0.25 tolerated(0.23) benign(0.004) TCGA-CD-A4MJ-01 19 42754583 42754583 C T ERF Missense_Mutation p.G53R 0.23 deleterious(0) probably_damaging(1) TCGA-CD-A4MJ-01 19 43269833 43269833 G A PSG8 5'Flank 0.31 TCGA-CD-A4MJ-01 19 44156377 44156377 C T PLAUR Missense_Mutation p.E252K 0.30 tolerated(0.58) benign(0.001) TCGA-CD-A4MJ-01 19 44236934 44236934 G A SMG9 Intron 0.11 TCGA-CD-A4MJ-01 19 44352729 44352729 G A ZNF283 Missense_Mutation p.C659Y 0.34 deleterious(0.03) benign(0.005) TCGA-CD-A4MJ-01 19 4453490 4453490 C T UBXN6 Missense_Mutation p.V93I 0.24 tolerated(0.05) benign(0.004) TCGA-CD-A4MJ-01 19 45800947 45800947 C T MARK4 Missense_Mutation p.R538W 0.20 deleterious(0.04) benign(0) TCGA-CD-A4MJ-01 19 45895249 45895249 G T PPP1R13L Silent p.P568P 0.30 TCGA-CD-A4MJ-01 19 45900173 45900173 G - PPP1R13L Frame_Shift_Del p.K115Rfs*109 0.28 TCGA-CD-A4MJ-01 19 47181830 47181830 C T PRKD2 Missense_Mutation p.E721K 0.35 deleterious(0) probably_damaging(0.996) TCGA-CD-A4MJ-01 19 47424760 47424760 A - ARHGAP35 Frame_Shift_Del p.K945Rfs*3 0.27 TCGA-CD-A4MJ-01 19 49897748 49897748 G A CCDC155 Missense_Mutation p.R20Q 0.29 tolerated(1) benign(0) TCGA-CD-A4MJ-01 19 49934675 49934675 A G SLC17A7 Missense_Mutation p.V394A 0.27 tolerated(0.06) benign(0.06) TCGA-CD-A4MJ-01 19 50031965 50031965 G A RCN3 Missense_Mutation p.R79H 0.37 deleterious(0) probably_damaging(0.972) TCGA-CD-A4MJ-01 19 50361173 50361173 C T PTOV1 Missense_Mutation p.P273S 0.18 tolerated(0.2) probably_damaging(0.96) TCGA-CD-A4MJ-01 19 50363527 50363527 G - PTOV1 Frame_Shift_Del p.*417Sfs*14 0.36 TCGA-CD-A4MJ-01 19 50862331 50862331 G A NAPSA Silent p.P324P 0.22 TCGA-CD-A4MJ-01 19 52521663 52521663 G A ZNF614 Missense_Mutation p.R34W 0.27 tolerated(0.17) benign(0.003) TCGA-CD-A4MJ-01 19 55493959 55493959 G T NLRP2 Missense_Mutation p.G298V 0.27 deleterious(0) probably_damaging(0.996) TCGA-CD-A4MJ-01 19 55785969 55785969 A G HSPBP1 Missense_Mutation p.M146T 0.31 deleterious(0.03) benign(0.03) TCGA-CD-A4MJ-01 19 57175446 57175446 C T ZNF835 Missense_Mutation p.R374H 0.26 tolerated(0.58) possibly_damaging(0.706) TCGA-CD-A4MJ-01 19 58718429 58718429 C A ZNF274 Silent p.I199I 0.29 TCGA-CD-A4MJ-01 19 58806481 58806481 C T ZNF8 Missense_Mutation p.T436M 0.23 tolerated(0.25) possibly_damaging(0.732) TCGA-CD-A4MJ-01 19 6444302 6444304 TTC - SLC25A23 In_Frame_Del p.K360del 0.43 TCGA-CD-A4MJ-01 19 7607930 7607930 A G PNPLA6 Missense_Mutation p.H532R 0.41 deleterious(0.04) benign(0.085) TCGA-CD-A4MJ-01 19 7970734 7970734 C T MAP2K7 Intron 0.27 TCGA-CD-A4MJ-01 19 8468466 8468466 C T RAB11B 3'UTR 0.22 TCGA-CD-A4MJ-01 19 8530239 8530239 T C HNRNPM Missense_Mutation p.M157T 0.07 tolerated(0.09) benign(0.093) TCGA-CD-A4MJ-01 19 8556025 8556025 A G PRAM1 Silent p.V531V 0.29 TCGA-CD-A4MJ-01 19 8993492 8993492 G T MUC16 Missense_Mutation p.P13866H 0.17 probably_damaging(0.967) TCGA-CD-A4MJ-01 19 9069762 9069762 T C MUC16 Missense_Mutation p.Q5895R 0.34 unknown(0) TCGA-CD-A4MJ-01 19 9362217 9362217 T - OR7E24 Frame_Shift_Del p.F168Lfs*12 0.26 TCGA-CD-A4MJ-01 19 9408627 9408627 T A ZNF699 Missense_Mutation p.E72V 0.27 tolerated(0.08) benign(0.011) TCGA-CD-A4MJ-01 19 9763836 9763836 G A ZNF562 Missense_Mutation p.T357M 0.31 deleterious(0) possibly_damaging(0.656) TCGA-CD-A4MJ-01 19 9868448 9868448 C T ZNF846 Silent p.S435S 0.06 TCGA-CD-A4MJ-01 1 104112564 104112564 G A AMY2B Intron 0.29 TCGA-CD-A4MJ-01 1 109735346 109735346 C A KIAA1324 Silent p.G599G 0.31 TCGA-CD-A4MJ-01 1 110199710 110199710 G A GSTM4 Intron 0.30 TCGA-CD-A4MJ-01 1 1104452 1104452 A G TTLL10 5'Flank 0.27 TCGA-CD-A4MJ-01 1 111862019 111862019 G A CHIA Missense_Mutation p.G369D 0.31 deleterious(0.03) benign(0.291) TCGA-CD-A4MJ-01 1 11303205 11303205 G A MTOR Nonsense_Mutation p.R460* 0.33 TCGA-CD-A4MJ-01 1 114354357 114354357 C T RSBN1 Silent p.V226V 0.40 TCGA-CD-A4MJ-01 1 1147466 1147466 C T TNFRSF4 Missense_Mutation p.A164T 0.40 deleterious(0.05) possibly_damaging(0.536) TCGA-CD-A4MJ-01 1 1147469 1147469 C T TNFRSF4 Missense_Mutation p.D163N 0.36 tolerated(0.07) possibly_damaging(0.695) TCGA-CD-A4MJ-01 1 116226580 116226580 C T VANGL1 Missense_Mutation p.A321V 0.38 tolerated(0.35) benign(0.072) TCGA-CD-A4MJ-01 1 120438726 120438726 C T ADAM30 Nonsense_Mutation p.W78* 0.31 TCGA-CD-A4MJ-01 1 145509207 145509207 G A RBM8A Missense_Mutation p.R174H 0.20 deleterious_low_confidence(0.01) unknown(0) TCGA-CD-A4MJ-01 1 150676776 150676776 T - HORMAD1 Frame_Shift_Del p.N283Tfs*12 0.43 TCGA-CD-A4MJ-01 1 151298700 151298700 G A PI4KB 5'UTR 0.43 TCGA-CD-A4MJ-01 1 151993805 151993805 G T NBPF18P RNA 0.28 TCGA-CD-A4MJ-01 1 152276340 152276340 T C FLG Silent p.S3674S 0.19 TCGA-CD-A4MJ-01 1 152659551 152659551 C T LCE2B Missense_Mutation p.P78S 0.32 tolerated_low_confidence(0.47) unknown(0) TCGA-CD-A4MJ-01 1 152659570 152659570 G A LCE2B Missense_Mutation p.R84H 0.33 tolerated_low_confidence(0.55) unknown(0) TCGA-CD-A4MJ-01 1 154408561 154408561 G A IL6R Silent p.P308P 0.34 TCGA-CD-A4MJ-01 1 155823172 155823172 T - GON4L Frame_Shift_Del p.M134* 0.22 TCGA-CD-A4MJ-01 1 156235910 156235910 G A SMG5 Missense_Mutation p.T506M 0.27 deleterious(0) possibly_damaging(0.495) TCGA-CD-A4MJ-01 1 156255497 156255498 - C TMEM79 Frame_Shift_Ins p.R163Pfs*9 0.22 TCGA-CD-A4MJ-01 1 157666009 157666010 AC - FCRL3 Frame_Shift_Del p.V318Hfs*15 0.23 TCGA-CD-A4MJ-01 1 158517185 158517185 C A OR6Y1 Missense_Mutation p.Q237H 0.30 deleterious(0.05) benign(0.12) TCGA-CD-A4MJ-01 1 161123731 161123731 C A UFC1 5'UTR 0.19 TCGA-CD-A4MJ-01 1 161641299 161641299 G T FCGR2B Missense_Mutation p.W84L 0.29 deleterious(0) probably_damaging(1) TCGA-CD-A4MJ-01 1 16258616 16258616 G A SPEN Missense_Mutation p.D1961N 0.42 benign(0.205) TCGA-CD-A4MJ-01 1 16272679 16272679 G A ZBTB17 Missense_Mutation p.R169C 0.21 deleterious_low_confidence(0.04) benign(0.306) TCGA-CD-A4MJ-01 1 165324751 165324751 C T LMX1A Missense_Mutation p.D16N 0.30 tolerated_low_confidence(0.27) benign(0.025) TCGA-CD-A4MJ-01 1 170004605 170004605 A - KIFAP3 Frame_Shift_Del p.C203Vfs*22 0.16 TCGA-CD-A4MJ-01 1 17023339 17023339 T G ESPNP RNA 0.08 TCGA-CD-A4MJ-01 1 171251310 171251310 T C FMO1 Missense_Mutation p.S341P 0.31 tolerated(0.22) possibly_damaging(0.873) TCGA-CD-A4MJ-01 1 171605749 171605749 G A MYOC Silent p.T277T 0.27 TCGA-CD-A4MJ-01 1 17272839 17272839 T G CROCC Missense_Mutation p.L741R 0.14 possibly_damaging(0.865) TCGA-CD-A4MJ-01 1 174417890 174417890 C A GPR52 Missense_Mutation p.P214H 0.05 deleterious(0) probably_damaging(1) TCGA-CD-A4MJ-01 1 17690051 17690052 - C PADI4 Frame_Shift_Ins p.K600Qfs*113 0.26 TCGA-CD-A4MJ-01 1 183097844 183097844 G T LAMC1 Missense_Mutation p.R1080M 0.21 deleterious(0.02) possibly_damaging(0.527) TCGA-CD-A4MJ-01 1 185703900 185703900 A G HMCN1 5'UTR 0.37 TCGA-CD-A4MJ-01 1 185969176 185969176 G A HMCN1 Splice_Site p.X1292_splice 0.12 TCGA-CD-A4MJ-01 1 193205394 193205394 T G CDC73 Missense_Mutation p.V442G 0.30 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MJ-01 1 197069949 197069949 T C ASPM Missense_Mutation p.Y2811C 0.25 deleterious(0.04) benign(0.014) TCGA-CD-A4MJ-01 1 197111558 197111558 C T ASPM Silent p.E608E 0.26 TCGA-CD-A4MJ-01 1 201842024 201842024 G A IPO9 Missense_Mutation p.R882H 0.44 tolerated(0.18) benign(0.007) TCGA-CD-A4MJ-01 1 201859594 201859594 A - SHISA4 Frame_Shift_Del p.I86Mfs*8 0.25 TCGA-CD-A4MJ-01 1 204945820 204945820 C A NFASC Silent p.S576S 0.30 TCGA-CD-A4MJ-01 1 205744039 205744039 C T RAB7L1 Missense_Mutation p.A16T 0.27 tolerated(0.05) possibly_damaging(0.453) TCGA-CD-A4MJ-01 1 207696973 207696973 C - CR1 Frame_Shift_Del p.T171Pfs*21 0.26 TCGA-CD-A4MJ-01 1 209778891 209778891 G - CAMK1G Frame_Shift_Del p.E104Sfs*20 0.23 TCGA-CD-A4MJ-01 1 20987823 20987823 G A DDOST Silent p.A24A 0.30 TCGA-CD-A4MJ-01 1 213445891 213445891 C T RPS6KC1 Nonsense_Mutation p.R1039* 0.30 TCGA-CD-A4MJ-01 1 22150707 22150707 T C LDLRAD2 3'UTR 0.32 TCGA-CD-A4MJ-01 1 22170713 22170713 G A HSPG2 Silent p.C2848C 0.33 TCGA-CD-A4MJ-01 1 223177746 223177746 A C DISP1 Missense_Mutation p.T1003P 0.40 deleterious(0) probably_damaging(0.997) TCGA-CD-A4MJ-01 1 228598740 228598740 G A TRIM17 Silent p.S221S 0.31 TCGA-CD-A4MJ-01 1 231126011 231126011 T C ARV1 Splice_Site p.X150_splice 0.29 TCGA-CD-A4MJ-01 1 23191383 23191384 - C EPHB2 Frame_Shift_Ins p.Q329Pfs*9 0.25 TCGA-CD-A4MJ-01 1 232561478 232561478 C A SIPA1L2 Missense_Mutation p.R1496M 0.28 deleterious(0) probably_damaging(1) TCGA-CD-A4MJ-01 1 236917337 236917337 G A ACTN2 Missense_Mutation p.A644T 0.28 tolerated(0.4) possibly_damaging(0.56) TCGA-CD-A4MJ-01 1 241725514 241725514 G A KMO Missense_Mutation p.C166Y 0.30 deleterious(0) probably_damaging(0.981) TCGA-CD-A4MJ-01 1 248129247 248129247 A C OR2AK2 Missense_Mutation p.Q205P 0.23 tolerated(0.15) possibly_damaging(0.846) TCGA-CD-A4MJ-01 1 27106973 27106973 T C ARID1A Missense_Mutation p.L2195P 0.23 probably_damaging(0.998) TCGA-CD-A4MJ-01 1 27429016 27429016 C G SLC9A1 Missense_Mutation p.K560N 0.25 deleterious(0) possibly_damaging(0.856) TCGA-CD-A4MJ-01 1 31208028 31208028 G T LAPTM5 Missense_Mutation p.L231I 0.10 tolerated(0.5) benign(0.328) TCGA-CD-A4MJ-01 1 31836880 31836882 AGA - ZCCHC17 In_Frame_Del p.K194del 0.31 TCGA-CD-A4MJ-01 1 32119209 32119209 C T COL16A1 Missense_Mutation p.G1535S 0.23 probably_damaging(1) TCGA-CD-A4MJ-01 1 35484912 35484912 A - ZMYM6 Intron 0.30 TCGA-CD-A4MJ-01 1 3624162 3624162 C T TP73 Missense_Mutation p.A79V 0.38 deleterious(0.01) benign(0.296) TCGA-CD-A4MJ-01 1 3638722 3638722 C T TP73 Silent p.D189D 0.18 TCGA-CD-A4MJ-01 1 36643530 36643530 C - MAP7D1 Frame_Shift_Del p.C481Afs*94 0.32 TCGA-CD-A4MJ-01 1 39927669 39927669 C T MACF1 Missense_Mutation p.A5154V 0.26 probably_damaging(0.978) TCGA-CD-A4MJ-01 1 40433330 40433330 C T MFSD2A Nonsense_Mutation p.Q361* 0.11 TCGA-CD-A4MJ-01 1 43738892 43738892 C T TMEM125 Silent p.L167L 0.34 TCGA-CD-A4MJ-01 1 43885552 43885552 C T SZT2 Missense_Mutation p.R343W 0.26 deleterious(0) probably_damaging(0.983) TCGA-CD-A4MJ-01 1 43895376 43895376 T C SZT2 Missense_Mutation p.I1333T 0.28 tolerated(0.59) benign(0.318) TCGA-CD-A4MJ-01 1 43916076 43916076 A G SZT2 Silent p.Q3351Q 0.04 TCGA-CD-A4MJ-01 1 44443642 44443642 T - ATP6V0B Intron 0.23 TCGA-CD-A4MJ-01 1 44461462 44461464 AGA - CCDC24 In_Frame_Del p.K214del 0.31 TCGA-CD-A4MJ-01 1 46768845 46768845 G A LRRC41 Silent p.C50C 0.30 TCGA-CD-A4MJ-01 1 52257768 52257768 C T NRD1 Missense_Mutation p.M1010I 0.26 tolerated(0.05) benign(0.261) TCGA-CD-A4MJ-01 1 52828379 52828379 G T CC2D1B Missense_Mutation p.L37M 0.04 tolerated(0.12) possibly_damaging(0.786) TCGA-CD-A4MJ-01 1 52867896 52867896 G T ORC1 5'UTR 0.40 TCGA-CD-A4MJ-01 1 55472890 55472890 C A BSND Missense_Mutation p.H165N 0.21 deleterious(0) possibly_damaging(0.813) TCGA-CD-A4MJ-01 1 6027399 6027399 G - NPHP4 Frame_Shift_Del p.R160Efs*18 0.27 TCGA-CD-A4MJ-01 1 63299738 63299738 T C ATG4C Silent p.G321G 0.08 TCGA-CD-A4MJ-01 1 65107593 65107593 A G CACHD1 Missense_Mutation p.N315S 0.37 tolerated(0.84) benign(0) TCGA-CD-A4MJ-01 1 67147853 67147853 G A SGIP1 Silent p.S372S 0.26 TCGA-CD-A4MJ-01 1 67838168 67838168 A G IL12RB2 Silent p.S503S 0.31 TCGA-CD-A4MJ-01 1 70501850 70501850 A G LRRC7 Missense_Mutation p.H643R 0.07 tolerated(1) benign(0.002) TCGA-CD-A4MJ-01 1 71534974 71534974 C T ZRANB2 Missense_Mutation p.R252H 0.29 deleterious(0.01) unknown(0) TCGA-CD-A4MJ-01 1 77883388 77883388 T C AK5 Silent p.D349D 0.11 TCGA-CD-A4MJ-01 1 85116004 85116005 - T SSX2IP Intron 0.29 TCGA-CD-A4MJ-01 1 85551643 85551643 A G WDR63 Missense_Mutation p.K224E 0.25 deleterious(0) benign(0.24) TCGA-CD-A4MJ-01 1 86939530 86939531 - A CLCA1 Frame_Shift_Ins p.L144Vfs*3 0.29 TCGA-CD-A4MJ-01 1 87538823 87538823 A - HS2ST1 Frame_Shift_Del p.N112Ifs*4 0.09 TCGA-CD-A4MJ-01 1 90058389 90058390 - A LRRC8B Frame_Shift_Ins p.N735Kfs*2 0.21 TCGA-CD-A4MJ-01 1 90399383 90399383 A G LRRC8D Silent p.P252P 0.18 TCGA-CD-A4MJ-01 1 95357932 95357932 T - SLC44A3 Frame_Shift_Del p.F574Lfs*4 0.29 TCGA-CD-A4MJ-01 1 9804682 9804682 G A CLSTN1 Silent p.A335A 0.43 TCGA-CD-A4MJ-01 20 1161416 1161416 G - TMEM74B 3'UTR 0.23 TCGA-CD-A4MJ-01 20 139606 139607 - T DEFB127 Frame_Shift_Ins p.Q82Sfs*34 0.18 TCGA-CD-A4MJ-01 20 16506751 16506751 C T KIF16B Missense_Mutation p.V73I 0.33 tolerated(0.21) benign(0.016) TCGA-CD-A4MJ-01 20 19955391 19955391 G C RIN2 Missense_Mutation p.R290P 0.30 tolerated(0.2) benign(0.017) TCGA-CD-A4MJ-01 20 2463857 2463857 G A ZNF343 Nonsense_Mutation p.R584* 0.27 TCGA-CD-A4MJ-01 20 25004162 25004162 C T ACSS1 Silent p.L249L 0.29 TCGA-CD-A4MJ-01 20 25472073 25472073 T G NINL Silent p.R467R 0.39 TCGA-CD-A4MJ-01 20 33530700 33530700 G T GSS Intron 0.35 TCGA-CD-A4MJ-01 20 34828094 34828094 C A AAR2 Missense_Mutation p.P102T 0.25 tolerated(0.37) possibly_damaging(0.601) TCGA-CD-A4MJ-01 20 35177567 35177567 A G MYL9 Missense_Mutation p.E145G 0.30 tolerated(0.52) probably_damaging(0.973) TCGA-CD-A4MJ-01 20 37634970 37634970 G A DHX35 Missense_Mutation p.R398H 0.34 deleterious(0.01) possibly_damaging(0.554) TCGA-CD-A4MJ-01 20 39801247 39801247 G A PLCG1 Missense_Mutation p.C1031Y 0.39 deleterious(0.02) probably_damaging(1) TCGA-CD-A4MJ-01 20 41306553 41306553 C - PTPRT Frame_Shift_Del p.G369Vfs*28 0.24 TCGA-CD-A4MJ-01 20 42815397 42815397 C T JPH2 5'UTR 0.32 TCGA-CD-A4MJ-01 20 44574482 44574483 GA - PCIF1 Frame_Shift_Del p.E435Dfs*22 0.12 TCGA-CD-A4MJ-01 20 48522803 48522803 G - SPATA2 Frame_Shift_Del p.H306Tfs*202 0.32 TCGA-CD-A4MJ-01 20 50139946 50139946 C A NFATC2 Missense_Mutation p.Q278H 0.12 tolerated(0.5) benign(0.263) TCGA-CD-A4MJ-01 20 50701599 50701599 G A ZFP64 Missense_Mutation p.R479W 0.24 deleterious(0) probably_damaging(0.965) TCGA-CD-A4MJ-01 20 51871592 51871592 A - TSHZ2 Frame_Shift_Del p.N533Tfs*43 0.19 TCGA-CD-A4MJ-01 20 56098123 56098123 C T CTCFL Splice_Site p.X252_splice 0.27 TCGA-CD-A4MJ-01 20 57480479 57480479 A G GNAS Silent p.G801G 0.07 TCGA-CD-A4MJ-01 20 57829477 57829477 T G ZNF831 Silent p.A1571A 0.09 TCGA-CD-A4MJ-01 20 61386229 61386229 C T NTSR1 Missense_Mutation p.R303C 0.23 deleterious(0.02) possibly_damaging(0.51) TCGA-CD-A4MJ-01 20 62234425 62234425 C - GMEB2 Frame_Shift_Del p.E84Rfs*32 0.24 TCGA-CD-A4MJ-01 20 62319690 62319692 TCT - RTEL1 In_Frame_Del p.F584del 0.22 TCGA-CD-A4MJ-01 21 28212301 28212301 G A ADAMTS1 Missense_Mutation p.T582M 0.08 deleterious(0) probably_damaging(0.973) TCGA-CD-A4MJ-01 21 30303474 30303474 T A LTN1 Intron 0.29 TCGA-CD-A4MJ-01 21 32508291 32508291 C T TIAM1 Silent p.S1281S 0.24 TCGA-CD-A4MJ-01 21 32582408 32582408 C T TIAM1 Missense_Mutation p.V781I 0.28 tolerated(1) benign(0.006) TCGA-CD-A4MJ-01 21 33982263 33982263 T C AP000275.65 Silent p.G64G 0.32 TCGA-CD-A4MJ-01 21 34925015 34925015 T C SON Silent p.L1160L 0.32 TCGA-CD-A4MJ-01 21 34974629 34974629 T C CRYZL1 Missense_Mutation p.Q163R 0.30 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MJ-01 21 46226874 46226875 TG - SUMO3 Frame_Shift_Del p.H101Qfs*21 0.27 TCGA-CD-A4MJ-01 21 47985656 47985656 G A DIP2A Missense_Mutation p.G1399R 0.13 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MJ-01 22 20073931 20073931 G T DGCR8 Missense_Mutation p.G149C 0.31 deleterious_low_confidence(0) benign(0.272) TCGA-CD-A4MJ-01 22 26351273 26351273 C T MYO18B Silent p.A2033A 0.17 TCGA-CD-A4MJ-01 22 26829563 26829563 C - ASPHD2 5'UTR 0.29 TCGA-CD-A4MJ-01 22 30802355 30802355 C T SEC14L2 Missense_Mutation p.S52L 0.37 deleterious(0) benign(0.349) TCGA-CD-A4MJ-01 22 37705361 37705361 C A CYTH4 Missense_Mutation p.L269I 0.20 tolerated(0.22) benign(0.111) TCGA-CD-A4MJ-01 22 39124048 39124048 G A GTPBP1 Missense_Mutation p.R533H 0.30 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MJ-01 22 40662751 40662751 G A TNRC6B Silent p.S839S 0.19 TCGA-CD-A4MJ-01 22 41753257 41753257 C T ZC3H7B Silent p.L920L 0.26 TCGA-CD-A4MJ-01 22 41903881 41903881 C T ACO2 Missense_Mutation p.S87L 0.33 deleterious_low_confidence(0) benign(0.3) TCGA-CD-A4MJ-01 22 42078403 42078403 T C NHP2L1 5'UTR 0.08 TCGA-CD-A4MJ-01 22 42126614 42126614 T - MEI1 Frame_Shift_Del p.S359Pfs*13 0.27 TCGA-CD-A4MJ-01 22 42807623 42807623 T C NFAM1 Missense_Mutation p.S81G 0.33 tolerated(0.17) benign(0.023) TCGA-CD-A4MJ-01 22 45312220 45312220 G A PHF21B Silent p.A168A 0.25 TCGA-CD-A4MJ-01 22 47433069 47433069 C T TBC1D22A Missense_Mutation p.T435I 0.33 deleterious(0) probably_damaging(0.956) TCGA-CD-A4MJ-01 22 50280399 50280399 T C ZBED4 Missense_Mutation p.I1030T 0.27 deleterious(0.02) possibly_damaging(0.77) TCGA-CD-A4MJ-01 2 105708963 105708963 A - MRPS9 Frame_Shift_Del p.K254Nfs*3 0.25 TCGA-CD-A4MJ-01 2 11052800 11052800 C T KCNF1 Missense_Mutation p.P83L 0.29 deleterious(0) probably_damaging(1) TCGA-CD-A4MJ-01 2 11332397 11332397 T - ROCK2 Frame_Shift_Del p.K1347Rfs*21 0.28 TCGA-CD-A4MJ-01 2 127806031 127806031 A - BIN1 3'UTR 0.31 TCGA-CD-A4MJ-01 2 128622689 128622689 G T AMMECR1L Silent p.P304P 0.23 TCGA-CD-A4MJ-01 2 136566597 136566597 G A LCT Missense_Mutation p.T1107M 0.23 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MJ-01 2 141130642 141130642 G T LRP1B Missense_Mutation p.A3568E 0.30 benign(0.008) TCGA-CD-A4MJ-01 2 143799645 143799645 A G KYNU Silent p.R434R 0.44 TCGA-CD-A4MJ-01 2 145156048 145156048 G A ZEB2 Silent p.S902S 0.30 TCGA-CD-A4MJ-01 2 148683686 148683686 A - ACVR2A Frame_Shift_Del p.K437Rfs*5 0.68 TCGA-CD-A4MJ-01 2 152470941 152470941 C T NEB Missense_Mutation p.S3817N 0.30 possibly_damaging(0.532) TCGA-CD-A4MJ-01 2 157186374 157186374 G - NR4A2 Frame_Shift_Del p.Q109Sfs*5 0.28 TCGA-CD-A4MJ-01 2 167269610 167269610 T C SCN7A Missense_Mutation p.T1146A 0.23 deleterious(0.01) benign(0.257) TCGA-CD-A4MJ-01 2 172017029 172017029 C T TLK1 5'UTR 0.46 TCGA-CD-A4MJ-01 2 176945405 176945405 G A EVX2 Silent p.Y287Y 0.20 TCGA-CD-A4MJ-01 2 179391762 179391762 T C TTN Missense_Mutation p.N35985D 0.45 TCGA-CD-A4MJ-01 2 179611264 179611264 T C TTN Intron 0.24 TCGA-CD-A4MJ-01 2 179638310 179638310 T C TTN Silent p.V2491V 0.06 TCGA-CD-A4MJ-01 2 189852825 189852825 G T COL3A1 Missense_Mutation p.G183C 0.18 unknown(0) TCGA-CD-A4MJ-01 2 20200211 20200211 T - MATN3 Frame_Shift_Del p.T387Hfs*10 0.35 TCGA-CD-A4MJ-01 2 203395573 203395573 A - BMPR2 Frame_Shift_Del p.N343Mfs*14 0.17 TCGA-CD-A4MJ-01 2 203420130 203420130 A - BMPR2 Frame_Shift_Del p.N583Tfs*44 0.22 TCGA-CD-A4MJ-01 2 203420664 203420669 CTTTGA ATTGG BMPR2 Frame_Shift_Del p.P759Hfs*13 0.09 TCGA-CD-A4MJ-01 2 203693622 203693622 T - ICA1L Frame_Shift_Del p.E38Rfs*30 0.23 TCGA-CD-A4MJ-01 2 207572065 207572065 G A DYTN Missense_Mutation p.P86L 0.53 deleterious(0.02) benign(0.183) TCGA-CD-A4MJ-01 2 209217472 209217472 T C PIKFYVE Missense_Mutation p.M1937T 0.29 deleterious(0) probably_damaging(0.997) TCGA-CD-A4MJ-01 2 21230763 21230763 C T APOB Missense_Mutation p.D2993N 0.28 benign(0.036) TCGA-CD-A4MJ-01 2 218947958 218947958 G T RUFY4 Missense_Mutation p.R514M 0.27 tolerated(0.11) benign(0.025) TCGA-CD-A4MJ-01 2 219855054 219855054 C T CRYBA2 Missense_Mutation p.G172R 0.05 deleterious(0.03) probably_damaging(1) TCGA-CD-A4MJ-01 2 220090164 220090164 C T ATG9A Missense_Mutation p.A115T 0.26 deleterious(0.01) probably_damaging(0.998) TCGA-CD-A4MJ-01 2 220315865 220315865 G A SPEG Silent p.S707S 0.31 TCGA-CD-A4MJ-01 2 225710332 225710332 G A DOCK10 Missense_Mutation p.H755Y 0.25 deleterious(0) possibly_damaging(0.77) TCGA-CD-A4MJ-01 2 228786191 228786191 C T DAW1 Missense_Mutation p.T376I 0.30 deleterious(0) benign(0.128) TCGA-CD-A4MJ-01 2 237415973 237415973 C T IQCA1 5'UTR 0.32 TCGA-CD-A4MJ-01 2 241447085 241447085 C A ANKMY1 Missense_Mutation p.Q717H 0.28 tolerated(0.99) benign(0.001) TCGA-CD-A4MJ-01 2 241973177 241973177 T C SNED1 Missense_Mutation p.I176T 0.32 deleterious(0) possibly_damaging(0.864) TCGA-CD-A4MJ-01 2 242755771 242755772 - C NEU4 Frame_Shift_Ins p.G46Rfs*15 0.16 TCGA-CD-A4MJ-01 2 25966139 25966139 T C ASXL2 Missense_Mutation p.T1023A 0.36 tolerated(0.44) benign(0.005) TCGA-CD-A4MJ-01 2 26684692 26684692 G T OTOF Missense_Mutation p.A1802E 0.29 deleterious(0) probably_damaging(0.964) TCGA-CD-A4MJ-01 2 26684950 26684950 C - OTOF Splice_Site p.X1764_splice 0.24 TCGA-CD-A4MJ-01 2 27249233 27249233 G T MAPRE3 3'UTR 0.29 TCGA-CD-A4MJ-01 2 28635331 28635331 T C FOSL2 3'UTR 0.25 TCGA-CD-A4MJ-01 2 28766084 28766084 C - PLB1 Frame_Shift_Del p.R297Dfs*16 0.13 TCGA-CD-A4MJ-01 2 36771544 36771544 T G CRIM1 Missense_Mutation p.N883K 0.36 tolerated(0.06) probably_damaging(0.968) TCGA-CD-A4MJ-01 2 37414553 37414553 T - SULT6B1 Frame_Shift_Del p.K48Sfs*21 0.44 TCGA-CD-A4MJ-01 2 51254969 51254969 G A NRXN1 Missense_Mutation p.T148M 0.40 tolerated(0.11) possibly_damaging(0.636) TCGA-CD-A4MJ-01 2 73493775 73493775 G A FBXO41 Missense_Mutation p.T314M 0.30 deleterious(0) possibly_damaging(0.782) TCGA-CD-A4MJ-01 2 74317154 74317154 G A TET3 Missense_Mutation p.A872T 0.30 tolerated(0.33) benign(0.003) TCGA-CD-A4MJ-01 2 74783466 74783467 - C DOK1 Frame_Shift_Ins p.S226Lfs*15 0.30 TCGA-CD-A4MJ-01 2 75101065 75101065 T C HK2 Missense_Mutation p.I229T 0.19 deleterious(0) probably_damaging(1) TCGA-CD-A4MJ-01 2 86276318 86276318 G A POLR1A Missense_Mutation p.R814C 0.35 deleterious(0.01) benign(0.152) TCGA-CD-A4MJ-01 2 97749462 97749462 T G FAHD2B 3'UTR 0.14 TCGA-CD-A4MJ-01 2 98504533 98504533 A G TMEM131 Missense_Mutation p.M114T 0.41 deleterious(0.02) probably_damaging(0.957) TCGA-CD-A4MJ-01 3 114058003 114058003 G - ZBTB20 Frame_Shift_Del p.P692Lfs*43 0.22 TCGA-CD-A4MJ-01 3 123633732 123633732 G A CCDC14 Missense_Mutation p.T878M 0.41 deleterious(0) probably_damaging(0.968) TCGA-CD-A4MJ-01 3 127783746 127783746 G A SEC61A1 Missense_Mutation p.A215T 0.31 deleterious(0) probably_damaging(0.95) TCGA-CD-A4MJ-01 3 129195279 129195279 G A IFT122 Missense_Mutation p.R364Q 0.04 tolerated(0.34) benign(0.009) TCGA-CD-A4MJ-01 3 132337509 132337509 A - ACAD11 Frame_Shift_Del p.F461Lfs*46 0.17 TCGA-CD-A4MJ-01 3 137880688 137880689 - A DBR1 3'UTR 0.29 TCGA-CD-A4MJ-01 3 140122508 140122508 G T CLSTN2 Silent p.L90L 0.28 TCGA-CD-A4MJ-01 3 140407105 140407105 C T TRIM42 Silent p.L527L 0.32 TCGA-CD-A4MJ-01 3 141326548 141326548 A - RASA2 Frame_Shift_Del p.N656Tfs*21 0.19 TCGA-CD-A4MJ-01 3 142775212 142775212 A - U2SURP Frame_Shift_Del p.K1005Nfs*30 0.29 TCGA-CD-A4MJ-01 3 14724444 14724444 C - C3orf20 Frame_Shift_Del p.L77Wfs*15 0.15 TCGA-CD-A4MJ-01 3 150460067 150460067 G A SIAH2 Missense_Mutation p.T279M 0.36 deleterious(0.04) possibly_damaging(0.536) TCGA-CD-A4MJ-01 3 151176381 151176381 C T IGSF10 Silent p.T39T 0.22 TCGA-CD-A4MJ-01 3 167016150 167016150 A C ZBBX Missense_Mutation p.L608V 0.27 tolerated(0.51) possibly_damaging(0.828) TCGA-CD-A4MJ-01 3 186459703 186459704 - A KNG1 Frame_Shift_Ins p.N508Kfs*2 0.25 TCGA-CD-A4MJ-01 3 186502807 186502807 A G EIF4A2 Missense_Mutation p.I89V 0.27 tolerated(0.14) possibly_damaging(0.507) TCGA-CD-A4MJ-01 3 195704028 195704028 G A SDHAP1 RNA 0.59 TCGA-CD-A4MJ-01 3 196050848 196050848 G A TM4SF19 Missense_Mutation p.S157L 0.23 tolerated(0.16) benign(0.013) TCGA-CD-A4MJ-01 3 3134038 3134038 T - IL5RA Frame_Shift_Del p.K288Nfs*2 0.26 TCGA-CD-A4MJ-01 3 39166987 39166987 C T TTC21A Silent p.C460C 0.07 TCGA-CD-A4MJ-01 3 42244155 42244155 G A TRAK1 Missense_Mutation p.R552H 0.32 tolerated(0.14) probably_damaging(0.977) TCGA-CD-A4MJ-01 3 47161906 47161907 - T SETD2 Frame_Shift_Ins p.R1407Kfs*8 0.23 TCGA-CD-A4MJ-01 3 47385423 47385423 A G KLHL18 Missense_Mutation p.T573A 0.37 deleterious_low_confidence(0.04) benign(0.001) TCGA-CD-A4MJ-01 3 47453351 47453351 G A PTPN23 Missense_Mutation p.V1323I 0.31 benign(0.36) TCGA-CD-A4MJ-01 3 47651742 47651742 G A SMARCC1 Nonsense_Mutation p.R953* 0.06 TCGA-CD-A4MJ-01 3 49775738 49775738 C T IP6K1 Missense_Mutation p.R114Q 0.28 tolerated(0.67) benign(0.217) TCGA-CD-A4MJ-01 3 50153499 50153499 G T RBM5 Intron 0.43 TCGA-CD-A4MJ-01 3 50231585 50231585 C T GNAT1 Silent p.G213G 0.16 TCGA-CD-A4MJ-01 3 52426908 52426908 A G DNAH1 Missense_Mutation p.I3447M 0.18 benign(0.044) TCGA-CD-A4MJ-01 3 52512141 52512141 T C NISCH Missense_Mutation p.L339P 0.27 deleterious(0) probably_damaging(1) TCGA-CD-A4MJ-01 3 52551354 52551354 T C STAB1 Missense_Mutation p.I1503T 0.27 tolerated(0.47) benign(0.155) TCGA-CD-A4MJ-01 3 53785815 53785815 C T CACNA1D Missense_Mutation p.R1206W 0.28 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MJ-01 3 66434487 66434487 C T LRIG1 Missense_Mutation p.A667T 0.27 tolerated(0.1) benign(0.04) TCGA-CD-A4MJ-01 3 66465353 66465353 A G LRIG1 Missense_Mutation p.L213P 0.26 deleterious(0) probably_damaging(1) TCGA-CD-A4MJ-01 3 73047240 73047240 G - PPP4R2 Frame_Shift_Del p.K19Rfs*14 0.18 TCGA-CD-A4MJ-01 3 73433871 73433871 C T PDZRN3 Missense_Mutation p.G616S 0.32 tolerated(0.78) benign(0.002) TCGA-CD-A4MJ-01 3 9057396 9057396 G A SRGAP3 Silent p.D566D 0.25 TCGA-CD-A4MJ-01 3 97595968 97595968 C T CRYBG3 Missense_Mutation p.T29I 0.27 tolerated_low_confidence(0.19) benign(0.003) TCGA-CD-A4MJ-01 3 97731387 97731387 T C GABRR3 Intron 0.26 TCGA-CD-A4MJ-01 4 100851702 100851702 G A DNAJB14 Silent p.G70G 0.34 TCGA-CD-A4MJ-01 4 106367549 106367549 G C PPA2 Silent p.T144T 0.17 TCGA-CD-A4MJ-01 4 106367570 106367570 A G PPA2 Silent p.G137G 0.06 TCGA-CD-A4MJ-01 4 107845238 107845238 C T DKK2 Missense_Mutation p.R218H 0.24 deleterious(0) probably_damaging(0.987) TCGA-CD-A4MJ-01 4 110865126 110865126 G A EGF Missense_Mutation p.R213Q 0.27 deleterious(0.01) benign(0.344) TCGA-CD-A4MJ-01 4 123207740 123207740 C T KIAA1109 Missense_Mutation p.R3028C 0.30 benign(0.002) TCGA-CD-A4MJ-01 4 126242500 126242500 G A FAT4 Missense_Mutation p.G1645D 0.27 probably_damaging(0.987) TCGA-CD-A4MJ-01 4 128725223 128725223 A G HSPA4L Silent p.K322K 0.32 TCGA-CD-A4MJ-01 4 140270718 140270718 A - NAA15 Frame_Shift_Del p.A267Hfs*8 0.23 TCGA-CD-A4MJ-01 4 140394191 140394191 A G RAB33B Missense_Mutation p.S201G 0.35 deleterious(0.03) possibly_damaging(0.906) TCGA-CD-A4MJ-01 4 140624683 140624683 A - MGST2 Frame_Shift_Del p.K103Nfs*8 0.21 TCGA-CD-A4MJ-01 4 140810631 140810632 - GGT MAML3 In_Frame_Ins p.P654dup 0.20 TCGA-CD-A4MJ-01 4 142143532 142143532 A - ZNF330 Frame_Shift_Del p.K5Rfs*18 0.27 TCGA-CD-A4MJ-01 4 15067858 15067858 T - CPEB2 Frame_Shift_Del p.C989Vfs*31 0.18 TCGA-CD-A4MJ-01 4 151199022 151199022 C T LRBA Silent p.A2828A 0.05 TCGA-CD-A4MJ-01 4 151770620 151770620 G T LRBA Missense_Mutation p.A1371D 0.32 deleterious(0) possibly_damaging(0.511) TCGA-CD-A4MJ-01 4 153249385 153249385 G A FBXW7 Missense_Mutation p.R465C 0.32 deleterious(0) probably_damaging(1) TCGA-CD-A4MJ-01 4 156273869 156273869 T - MAP9 Frame_Shift_Del p.K567Rfs*13 0.26 TCGA-CD-A4MJ-01 4 159091773 159091773 C - FAM198B Frame_Shift_Del p.G252Afs*23 0.29 TCGA-CD-A4MJ-01 4 166935638 166935638 G A TLL1 Missense_Mutation p.R323H 0.37 tolerated(0.06) benign(0.099) TCGA-CD-A4MJ-01 4 175416735 175416735 T C HPGD Silent p.S154S 0.26 TCGA-CD-A4MJ-01 4 183694720 183694720 T C TENM3 Missense_Mutation p.I1663T 0.32 tolerated(0.25) benign(0.403) TCGA-CD-A4MJ-01 4 184614224 184614224 C T TRAPPC11 Missense_Mutation p.R721W 0.32 tolerated(0.08) possibly_damaging(0.898) TCGA-CD-A4MJ-01 4 187000149 187000149 A - TLR3 Frame_Shift_Del p.K201Nfs*2 0.30 TCGA-CD-A4MJ-01 4 3319189 3319191 AGG - RGS12 In_Frame_Del p.E433del 0.11 TCGA-CD-A4MJ-01 4 39462464 39462464 A - LIAS Frame_Shift_Del p.K36Rfs*31 0.26 TCGA-CD-A4MJ-01 4 39471655 39471655 C T LIAS Missense_Mutation p.R252W 0.16 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MJ-01 4 41748277 41748277 C T PHOX2B Silent p.A164A 0.29 TCGA-CD-A4MJ-01 4 43032468 43032468 C T GRXCR1 Nonsense_Mutation p.R262* 0.23 TCGA-CD-A4MJ-01 4 44450458 44450458 G A KCTD8 Missense_Mutation p.A28V 0.38 tolerated_low_confidence(0.26) possibly_damaging(0.499) TCGA-CD-A4MJ-01 4 46314590 46314590 T - GABRA2 Frame_Shift_Del p.K133Nfs*3 0.31 TCGA-CD-A4MJ-01 4 680446 680446 T C MFSD7 Missense_Mutation p.I57V 0.30 tolerated(0.63) benign(0.002) TCGA-CD-A4MJ-01 4 68385146 68385146 T - CENPC Frame_Shift_Del p.I136Yfs*6 0.23 TCGA-CD-A4MJ-01 4 70460308 70460308 C T UGT2A1 Silent p.Q563Q 0.37 TCGA-CD-A4MJ-01 4 71472057 71472057 C T AMBN Silent p.N318N 0.31 TCGA-CD-A4MJ-01 4 74005813 74005813 A G ANKRD17 Silent p.A840A 0.08 TCGA-CD-A4MJ-01 4 76891521 76891521 T - SDAD1 Frame_Shift_Del p.K275Rfs*15 0.28 TCGA-CD-A4MJ-01 4 80246788 80246788 G A NAA11 Missense_Mutation p.R82W 0.30 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MJ-01 5 10411586 10411586 A G MARCH6 Missense_Mutation p.I611M 0.06 tolerated(0.31) benign(0.016) TCGA-CD-A4MJ-01 5 10450112 10450112 A G ROPN1L Missense_Mutation p.K102E 0.32 deleterious(0.05) benign(0.318) TCGA-CD-A4MJ-01 5 108168618 108168618 C T FER Nonsense_Mutation p.Q119* 0.31 TCGA-CD-A4MJ-01 5 112116587 112116587 A - APC Frame_Shift_Del p.K212Nfs*7 0.35 TCGA-CD-A4MJ-01 5 112175676 112175677 AG - APC Frame_Shift_Del p.S1465Wfs*3 0.24 TCGA-CD-A4MJ-01 5 115813609 115813609 A G SEMA6A Missense_Mutation p.S528P 0.32 deleterious(0) probably_damaging(0.961) TCGA-CD-A4MJ-01 5 128359397 128359397 A - SLC27A6 Frame_Shift_Del p.G419Efs*10 0.23 TCGA-CD-A4MJ-01 5 131819592 131819592 T C IRF1 3'UTR 0.20 TCGA-CD-A4MJ-01 5 135496657 135496657 G A SMAD5 Silent p.T172T 0.33 TCGA-CD-A4MJ-01 5 137727435 137727435 T G KDM3B Missense_Mutation p.V705G 0.05 deleterious_low_confidence(0.01) benign(0.016) TCGA-CD-A4MJ-01 5 137735690 137735690 G A KDM3B Missense_Mutation p.R1063Q 0.29 tolerated(0.12) benign(0.014) TCGA-CD-A4MJ-01 5 139866640 139866640 A - ANKHD1 Frame_Shift_Del p.G749Vfs*12 0.27 TCGA-CD-A4MJ-01 5 140431403 140431403 C A PCDHB1 Silent p.S116S 0.35 TCGA-CD-A4MJ-01 5 140517344 140517344 G T PCDHB5 Missense_Mutation p.Q776H 0.30 tolerated_low_confidence(0.15) benign(0.011) TCGA-CD-A4MJ-01 5 140553130 140553130 C T PCDHB7 Silent p.N238N 0.32 TCGA-CD-A4MJ-01 5 140718560 140718560 C T PCDHGA2 Missense_Mutation p.P8S 0.37 tolerated_low_confidence(0.85) benign(0.006) TCGA-CD-A4MJ-01 5 140740955 140740955 A G PCDHGB2 Missense_Mutation p.Y418C 0.40 deleterious(0) probably_damaging(1) TCGA-CD-A4MJ-01 5 140782828 140782828 G A PCDHGA9 Silent p.L103L 0.27 TCGA-CD-A4MJ-01 5 140869039 140869039 A C PCDHGC5 Missense_Mutation p.S78R 0.30 tolerated(0.15) benign(0.012) TCGA-CD-A4MJ-01 5 1432617 1432617 G A SLC6A3 Silent p.N205N 0.26 TCGA-CD-A4MJ-01 5 145969375 145969376 - T PPP2R2B 3'UTR 0.44 TCGA-CD-A4MJ-01 5 147793698 147793698 G T FBXO38 Splice_Site p.X365_splice 0.35 TCGA-CD-A4MJ-01 5 147830828 147830828 C T HTR4 Missense_Mutation p.V362I 0.30 tolerated_low_confidence(0.18) benign(0.029) TCGA-CD-A4MJ-01 5 149546485 149546485 G A CDX1 Missense_Mutation p.G16S 0.23 tolerated(0.33) possibly_damaging(0.816) TCGA-CD-A4MJ-01 5 149546487 149546487 C G CDX1 Silent p.G16G 0.23 TCGA-CD-A4MJ-01 5 150566955 150566955 T C CCDC69 Missense_Mutation p.T129A 0.33 tolerated(1) benign(0) TCGA-CD-A4MJ-01 5 156769850 156769850 G A FNDC9 3'UTR 0.39 TCGA-CD-A4MJ-01 5 156816383 156816383 G A CYFIP2 Missense_Mutation p.A1106T 0.22 deleterious(0) probably_damaging(0.998) TCGA-CD-A4MJ-01 5 157166440 157166440 G - THG1L Frame_Shift_Del p.D284Mfs*11 0.30 TCGA-CD-A4MJ-01 5 169111316 169111316 C T DOCK2 Silent p.F241F 0.17 TCGA-CD-A4MJ-01 5 170736463 170736463 G A TLX3 Missense_Mutation p.A32T 0.38 tolerated(0.48) benign(0.002) TCGA-CD-A4MJ-01 5 171766016 171766016 C T SH3PXD2B Missense_Mutation p.R698Q 0.28 tolerated(0.19) benign(0.005) TCGA-CD-A4MJ-01 5 175111278 175111278 A G HRH2 Missense_Mutation p.T348A 0.06 tolerated(0.29) benign(0.001) TCGA-CD-A4MJ-01 5 176053505 176053506 - T SNCB Frame_Shift_Ins p.T59Nfs*34 0.29 TCGA-CD-A4MJ-01 5 176056614 176056614 G A SNCB Silent p.G14G 0.25 TCGA-CD-A4MJ-01 5 176070736 176070736 G A EIF4E1B Splice_Site p.X99_splice 0.10 TCGA-CD-A4MJ-01 5 176917892 176917892 T G PDLIM7 Missense_Mutation p.E184A 0.21 tolerated(0.42) benign(0.003) TCGA-CD-A4MJ-01 5 179218825 179218825 T G LTC4S 5'Flank 0.09 TCGA-CD-A4MJ-01 5 24488219 24488219 T - CDH10 Frame_Shift_Del p.E641Sfs*3 0.23 TCGA-CD-A4MJ-01 5 33596124 33596124 C T ADAMTS12 Missense_Mutation p.G857R 0.30 deleterious(0.01) possibly_damaging(0.537) TCGA-CD-A4MJ-01 5 34814751 34814751 T - RAI14 Frame_Shift_Del p.F310Lfs*20 0.08 TCGA-CD-A4MJ-01 5 36251559 36251559 G T RANBP3L Missense_Mutation p.H429N 0.29 deleterious(0) probably_damaging(0.992) TCGA-CD-A4MJ-01 5 55110957 55110957 G A DDX4 Silent p.S648S 0.37 TCGA-CD-A4MJ-01 5 78280984 78280984 G A ARSB Silent p.L30L 0.56 TCGA-CD-A4MJ-01 5 7831873 7831873 G A C5orf49 3'UTR 0.22 TCGA-CD-A4MJ-01 5 79366961 79366961 G A THBS4 Missense_Mutation p.D560N 0.28 tolerated(0.38) probably_damaging(0.992) TCGA-CD-A4MJ-01 5 79855037 79855037 G A ANKRD34B Missense_Mutation p.L268F 0.31 tolerated(0.06) possibly_damaging(0.894) TCGA-CD-A4MJ-01 5 80064741 80064741 C T MSH3 Silent p.D724D 0.31 TCGA-CD-A4MJ-01 5 80513294 80513294 T C RASGRF2 Splice_Site p.X1184_splice 0.25 TCGA-CD-A4MJ-01 5 89923187 89923187 A G GPR98 Missense_Mutation p.I278V 0.30 benign(0) TCGA-CD-A4MJ-01 5 9063142 9063142 G A SEMA5A Missense_Mutation p.S792L 0.38 tolerated(0.15) benign(0.442) TCGA-CD-A4MJ-01 5 9154749 9154749 C A SEMA5A Missense_Mutation p.L444F 0.31 deleterious(0.01) possibly_damaging(0.717) TCGA-CD-A4MJ-01 5 99871435 99871435 C T FAM174A Silent p.G67G 0.39 TCGA-CD-A4MJ-01 6 100062523 100062523 G A PRDM13 Missense_Mutation p.G671D 0.37 tolerated_low_confidence(0.33) benign(0.002) TCGA-CD-A4MJ-01 6 106634539 106634539 T - ATG5 Frame_Shift_Del p.K235Rfs*4 0.26 TCGA-CD-A4MJ-01 6 110534291 110534291 C T CDC40 Silent p.G290G 0.31 TCGA-CD-A4MJ-01 6 110778069 110778069 A G SLC22A16 Missense_Mutation p.W69R 0.30 tolerated(0.57) benign(0.002) TCGA-CD-A4MJ-01 6 116574135 116574135 C T TSPYL4 Missense_Mutation p.R346Q 0.21 tolerated(1) possibly_damaging(0.527) TCGA-CD-A4MJ-01 6 116966910 116966910 T C ZUFSP Silent p.A552A 0.35 TCGA-CD-A4MJ-01 6 127837038 127837038 C - SOGA3 Frame_Shift_Del p.G241Afs*133 0.24 TCGA-CD-A4MJ-01 6 135300363 135300363 G A HBS1L Silent p.G547G 0.07 TCGA-CD-A4MJ-01 6 135784284 135784284 T - AHI1 Frame_Shift_Del p.T304Qfs*23 0.44 TCGA-CD-A4MJ-01 6 137519585 137519585 A G IFNGR1 Silent p.S351S 0.37 TCGA-CD-A4MJ-01 6 139488308 139488308 G A HECA Missense_Mutation p.A387T 0.33 tolerated(0.6) probably_damaging(0.996) TCGA-CD-A4MJ-01 6 139694554 139694554 G - CITED2 Frame_Shift_Del p.G177Afs*42 0.30 TCGA-CD-A4MJ-01 6 144095279 144095279 A - PHACTR2 Frame_Shift_Del p.N507Tfs*22 0.28 TCGA-CD-A4MJ-01 6 144843173 144843175 CTT - UTRN In_Frame_Del p.L1868del 0.22 TCGA-CD-A4MJ-01 6 145161969 145161969 G A UTRN Splice_Site p.X3424_splice 0.25 TCGA-CD-A4MJ-01 6 146350620 146350620 C T GRM1 5'UTR 0.28 TCGA-CD-A4MJ-01 6 150004778 150004778 C T LATS1 Missense_Mutation p.A483T 0.20 tolerated_low_confidence(0.18) probably_damaging(0.998) TCGA-CD-A4MJ-01 6 150164195 150164195 G A LRP11 Silent p.T279T 0.07 TCGA-CD-A4MJ-01 6 151153343 151153343 T C PLEKHG1 Splice_Site p.X1032_splice 0.40 TCGA-CD-A4MJ-01 6 151672365 151672365 C - AKAP12 Frame_Shift_Del p.T949Rfs*23 0.29 TCGA-CD-A4MJ-01 6 152737985 152737985 G A SYNE1 Missense_Mutation p.R1863W 0.31 probably_damaging(0.999) TCGA-CD-A4MJ-01 6 15496722 15496722 G - JARID2 Frame_Shift_Del p.R425Gfs*36 0.32 TCGA-CD-A4MJ-01 6 167352430 167352432 CTT - RNASET2 In_Frame_Del p.K133del 0.22 TCGA-CD-A4MJ-01 6 167728874 167728874 G A UNC93A Silent p.P436P 0.26 TCGA-CD-A4MJ-01 6 168999624 168999624 C T SMOC2 Missense_Mutation p.T266M 0.19 deleterious(0) possibly_damaging(0.778) TCGA-CD-A4MJ-01 6 17837800 17837800 A - KIF13A Frame_Shift_Del p.L282Wfs*44 0.43 TCGA-CD-A4MJ-01 6 24289078 24289078 A G DCDC2 Splice_Site p.X253_splice 0.39 TCGA-CD-A4MJ-01 6 2785352 2785352 C - WRNIP1 Frame_Shift_Del p.V614Cfs*5 0.25 TCGA-CD-A4MJ-01 6 28269709 28269709 G A PGBD1 Missense_Mutation p.G693D 0.36 tolerated(0.24) benign(0.022) TCGA-CD-A4MJ-01 6 28269912 28269913 - T PGBD1 Frame_Shift_Ins p.L762Ffs*7 0.34 TCGA-CD-A4MJ-01 6 28500095 28500095 C T GPX5 Intron 0.27 TCGA-CD-A4MJ-01 6 28963905 28963905 T C ZNF311 Missense_Mutation p.M292V 0.30 tolerated(0.4) benign(0.002) TCGA-CD-A4MJ-01 6 30529885 30529885 C - PRR3 Frame_Shift_Del p.Q150Rfs*55 0.27 TCGA-CD-A4MJ-01 6 30890885 30890885 C T VARS2 Silent p.G760G 0.30 TCGA-CD-A4MJ-01 6 31323192 31323192 T C HLA-B Missense_Mutation p.Q266R 0.29 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CD-A4MJ-01 6 3224936 3224936 C - TUBB2B 3'UTR 0.35 TCGA-CD-A4MJ-01 6 33169042 33169042 C - SLC39A7 Frame_Shift_Del p.H9Tfs*8 0.29 TCGA-CD-A4MJ-01 6 33419549 33419549 C - SYNGAP1 Frame_Shift_Del p.L1302Wfs*8 0.34 TCGA-CD-A4MJ-01 6 34735761 34735762 - C SNRPC Frame_Shift_Ins p.S82Qfs*104 0.31 TCGA-CD-A4MJ-01 6 36710206 36710206 G A CPNE5 Missense_Mutation p.R541C 0.23 deleterious(0.04) probably_damaging(0.939) TCGA-CD-A4MJ-01 6 37140777 37140777 C T PIM1 Nonsense_Mutation p.R205* 0.30 TCGA-CD-A4MJ-01 6 38560397 38560397 G T BTBD9 Silent p.R257R 0.29 TCGA-CD-A4MJ-01 6 38791409 38791409 G T DNAH8 Missense_Mutation p.Q1047H 0.14 possibly_damaging(0.497) TCGA-CD-A4MJ-01 6 38997965 38997965 G A DNAH8 Missense_Mutation p.V4424I 0.06 benign(0.181) TCGA-CD-A4MJ-01 6 43400360 43400360 T C ABCC10 Silent p.A214A 0.33 TCGA-CD-A4MJ-01 6 43550104 43550104 T - POLH Frame_Shift_Del p.F18Lfs*12 0.09 TCGA-CD-A4MJ-01 6 44310824 44310825 - G SPATS1 5'UTR 0.24 TCGA-CD-A4MJ-01 6 57372344 57372344 C T PRIM2 Silent p.L250L 0.09 TCGA-CD-A4MJ-01 6 66054010 66054010 C T EYS Missense_Mutation p.C507Y 0.40 tolerated(0.06) probably_damaging(0.919) TCGA-CD-A4MJ-01 6 70991121 70991121 G - COL9A1 Frame_Shift_Del p.P283Lfs*45 0.17 TCGA-CD-A4MJ-01 6 76591511 76591511 T C MYO6 Missense_Mutation p.W798R 0.31 deleterious(0.02) unknown(0) TCGA-CD-A4MJ-01 6 84265953 84265953 G A SNAP91 Silent p.S881S 0.30 TCGA-CD-A4MJ-01 6 86197150 86197150 C A NT5E Silent p.S349S 0.29 TCGA-CD-A4MJ-01 7 100452359 100452360 - G SLC12A9 Frame_Shift_Ins p.G103Rfs*26 0.22 TCGA-CD-A4MJ-01 7 102920484 102920484 C T DPY19L2P2 RNA 0.50 TCGA-CD-A4MJ-01 7 105673129 105673129 C T CDHR3 Missense_Mutation p.H882Y 0.22 deleterious_low_confidence(0.01) benign(0.188) TCGA-CD-A4MJ-01 7 110303612 110303612 C A IMMP2L 3'UTR 0.24 TCGA-CD-A4MJ-01 7 114303519 114303520 - A FOXP2 Frame_Shift_Ins p.N622Kfs*13 0.24 TCGA-CD-A4MJ-01 7 120979292 120979292 A G WNT16 Missense_Mutation p.T331A 0.09 deleterious(0) probably_damaging(0.997) TCGA-CD-A4MJ-01 7 123119855 123119856 - A IQUB Frame_Shift_Ins p.L468Ffs*3 0.18 TCGA-CD-A4MJ-01 7 123324436 123324436 A - WASL 3'UTR 0.30 TCGA-CD-A4MJ-01 7 124404474 124404474 G A GPR37 Missense_Mutation p.A186V 0.32 tolerated(0.09) benign(0.001) TCGA-CD-A4MJ-01 7 127238521 127238521 C - FSCN3 Frame_Shift_Del p.L333Wfs*34 0.09 TCGA-CD-A4MJ-01 7 127251170 127251170 C T PAX4 Missense_Mutation p.G327D 0.21 deleterious_low_confidence(0) benign(0.01) TCGA-CD-A4MJ-01 7 129950677 129950677 G A CPA4 Missense_Mutation p.A282T 0.06 deleterious(0.01) probably_damaging(0.922) TCGA-CD-A4MJ-01 7 134851370 134851370 A - C7orf49 Frame_Shift_Del p.F156Sfs*5 0.34 TCGA-CD-A4MJ-01 7 142495146 142495146 C T TRBJ2-7 Silent p.Y3Y 0.30 TCGA-CD-A4MJ-01 7 144075858 144075858 C - ARHGEF5 Frame_Shift_Del p.Q1514Rfs*24 0.24 TCGA-CD-A4MJ-01 7 147092837 147092837 G A CNTNAP2 Silent p.A545A 0.27 TCGA-CD-A4MJ-01 7 148768490 148768490 A C ZNF786 Missense_Mutation p.C458W 0.16 deleterious(0) probably_damaging(0.995) TCGA-CD-A4MJ-01 7 149490473 149490473 C G SSPO RNA 0.21 TCGA-CD-A4MJ-01 7 150069144 150069144 C T REPIN1 Missense_Mutation p.R329C 0.27 deleterious(0.03) benign(0.117) TCGA-CD-A4MJ-01 7 151845190 151845190 G A KMT2C Missense_Mutation p.R4608C 0.30 benign(0.074) TCGA-CD-A4MJ-01 7 151874092 151874093 - T KMT2C Frame_Shift_Ins p.S2816Ifs*6 0.26 TCGA-CD-A4MJ-01 7 30795206 30795206 C T INMT Silent p.R177R 0.33 TCGA-CD-A4MJ-01 7 42187878 42187878 C T GLI3 Missense_Mutation p.R105H 0.14 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CD-A4MJ-01 7 44102368 44102368 T C PGAM2 Missense_Mutation p.K253E 0.20 deleterious(0.01) benign(0.014) TCGA-CD-A4MJ-01 7 44120414 44120414 G - POLM Frame_Shift_Del p.P97Qfs*6 0.25 TCGA-CD-A4MJ-01 7 44144334 44144334 C T AEBP1 Missense_Mutation p.R24C 0.50 tolerated_low_confidence(0.14) unknown(0) TCGA-CD-A4MJ-01 7 48317943 48317944 - T ABCA13 Frame_Shift_Ins p.T2387Hfs*12 0.26 TCGA-CD-A4MJ-01 7 6063167 6063167 G A AIMP2 Missense_Mutation p.A270T 0.31 tolerated(0.1) benign(0.102) TCGA-CD-A4MJ-01 7 63726340 63726340 T C ZNF679 Missense_Mutation p.V110A 0.26 tolerated(0.06) probably_damaging(0.978) TCGA-CD-A4MJ-01 7 64838896 64838896 C T ZNF92 5'UTR 0.23 TCGA-CD-A4MJ-01 7 70255656 70255656 C T AUTS2 Missense_Mutation p.R1152W 0.20 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MJ-01 7 73973302 73973302 C A GTF2IRD1 Missense_Mutation p.P772H 0.05 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MJ-01 7 76019509 76019509 C T SRCRB4D Missense_Mutation p.R532Q 0.24 tolerated(0.16) benign(0.023) TCGA-CD-A4MJ-01 7 76121562 76121562 C A DTX2 Missense_Mutation p.A334E 0.28 deleterious(0) benign(0.369) TCGA-CD-A4MJ-01 7 84647590 84647590 T G SEMA3D Missense_Mutation p.N508T 0.33 tolerated(0.19) benign(0.004) TCGA-CD-A4MJ-01 7 87407118 87407118 A G RUNDC3B Missense_Mutation p.Y285C 0.18 deleterious(0) probably_damaging(0.995) TCGA-CD-A4MJ-01 7 92158224 92158224 C T RBM48 Missense_Mutation p.P33S 0.22 tolerated(0.1) possibly_damaging(0.448) TCGA-CD-A4MJ-01 7 92733899 92733899 T - SAMD9 Frame_Shift_Del p.K504Nfs*21 0.10 TCGA-CD-A4MJ-01 7 92761615 92761615 A T SAMD9L Missense_Mutation p.S1224T 0.06 tolerated(0.28) benign(0.135) TCGA-CD-A4MJ-01 7 95216783 95216783 T G PDK4 Missense_Mutation p.T310P 0.08 deleterious(0) possibly_damaging(0.75) TCGA-CD-A4MJ-01 7 98256498 98256498 G A NPTX2 Missense_Mutation p.V304I 0.35 tolerated(0.98) benign(0.042) TCGA-CD-A4MJ-01 7 98569562 98569562 G T TRRAP Missense_Mutation p.E2604D 0.38 benign(0.003) TCGA-CD-A4MJ-01 8 103358483 103358483 G A UBR5 Silent p.S239S 0.08 TCGA-CD-A4MJ-01 8 104453816 104453816 A C DCAF13 Missense_Mutation p.Q559P 0.25 deleterious(0.02) possibly_damaging(0.491) TCGA-CD-A4MJ-01 8 104513161 104513161 C T RIMS2 Missense_Mutation p.A16V 0.09 deleterious_low_confidence(0.04) benign(0.115) TCGA-CD-A4MJ-01 8 104831715 104831715 G - RIMS2 Intron 0.29 TCGA-CD-A4MJ-01 8 105503269 105503269 G A LRP12 Missense_Mutation p.R738C 0.17 deleterious(0) possibly_damaging(0.891) TCGA-CD-A4MJ-01 8 110631179 110631179 T G SYBU Missense_Mutation p.S107R 0.23 tolerated(0.3) possibly_damaging(0.756) TCGA-CD-A4MJ-01 8 113332152 113332152 C T CSMD3 Silent p.T2408T 0.20 TCGA-CD-A4MJ-01 8 121706030 121706031 - G SNTB1 Frame_Shift_Ins p.S231Vfs*31 0.20 TCGA-CD-A4MJ-01 8 122626321 122626321 G A HAS2 3'UTR 0.39 TCGA-CD-A4MJ-01 8 123964522 123964522 G A ZHX2 Missense_Mutation p.V258I 0.27 tolerated(0.58) probably_damaging(0.994) TCGA-CD-A4MJ-01 8 125074167 125074167 T C FER1L6 Silent p.S1074S 0.22 TCGA-CD-A4MJ-01 8 125500847 125500847 A - TATDN1 Frame_Shift_Del p.P295Lfs*19 0.15 TCGA-CD-A4MJ-01 8 128428332 128428332 C T POU5F1B Missense_Mutation p.A74V 0.32 tolerated(0.17) benign(0.018) TCGA-CD-A4MJ-01 8 135614974 135614974 A G ZFAT Missense_Mutation p.Y330H 0.25 tolerated(0.66) possibly_damaging(0.652) TCGA-CD-A4MJ-01 8 139380191 139380191 T C FAM135B Silent p.V12V 0.27 TCGA-CD-A4MJ-01 8 142228357 142228357 A G SLC45A4 Missense_Mutation p.M410T 0.17 tolerated(0.1) benign(0.159) TCGA-CD-A4MJ-01 8 142437061 142437061 C T PTP4A3 Missense_Mutation p.A74V 0.21 deleterious(0.02) probably_damaging(0.999) TCGA-CD-A4MJ-01 8 143694938 143694938 C T ARC Missense_Mutation p.G232D 0.21 deleterious(0.01) probably_damaging(1) TCGA-CD-A4MJ-01 8 143846058 143846058 C T LYNX1 Missense_Mutation p.A121T 0.25 tolerated(0.1) benign(0.062) TCGA-CD-A4MJ-01 8 144941539 144941539 G A EPPK1 Silent p.N1961N 0.27 TCGA-CD-A4MJ-01 8 144993140 144993140 G A PLEC Missense_Mutation p.R3754C 0.22 probably_damaging(0.999) TCGA-CD-A4MJ-01 8 145106642 145106642 G A OPLAH Silent p.T1236T 0.11 TCGA-CD-A4MJ-01 8 145649609 145649609 C T VPS28 Missense_Mutation p.A149T 0.18 tolerated(0.07) possibly_damaging(0.46) TCGA-CD-A4MJ-01 8 145692620 145692620 G T KIFC2 Missense_Mutation p.S122I 0.04 deleterious_low_confidence(0.01) possibly_damaging(0.851) TCGA-CD-A4MJ-01 8 16012628 16012628 T - MSR1 Frame_Shift_Del p.G282Efs*18 0.26 TCGA-CD-A4MJ-01 8 16884785 16884785 C T MICU3 5'UTR 0.30 TCGA-CD-A4MJ-01 8 19362752 19362752 G A CSGALNACT1 Silent p.S198S 0.24 TCGA-CD-A4MJ-01 8 2026941 2026941 G A MYOM2 Silent p.A463A 0.21 TCGA-CD-A4MJ-01 8 21959324 21959324 C T FAM160B2 Nonsense_Mutation p.R605* 0.18 TCGA-CD-A4MJ-01 8 22006416 22006416 C T LGI3 Missense_Mutation p.G302S 0.31 deleterious(0) probably_damaging(1) TCGA-CD-A4MJ-01 8 22451274 22451274 C T PDLIM2 Missense_Mutation p.R554W 0.23 deleterious(0) probably_damaging(0.996) TCGA-CD-A4MJ-01 8 23301979 23301979 G T ENTPD4 Missense_Mutation p.L185I 0.24 tolerated(0.18) probably_damaging(0.999) TCGA-CD-A4MJ-01 8 25899691 25899691 C T EBF2 Missense_Mutation p.V70I 0.23 deleterious(0.03) possibly_damaging(0.802) TCGA-CD-A4MJ-01 8 27094411 27094411 G A STMN4 Silent p.A201A 0.32 TCGA-CD-A4MJ-01 8 27824038 27824038 G C SCARA5 Missense_Mutation p.A45G 0.19 tolerated(0.14) benign(0.001) TCGA-CD-A4MJ-01 8 38205208 38205209 AT - WHSC1L1 Frame_Shift_Del p.I161Pfs*8 0.17 TCGA-CD-A4MJ-01 8 42978094 42978094 T - POMK 3'UTR 0.18 TCGA-CD-A4MJ-01 8 4851963 4851963 C T CSMD1 5'Flank 0.13 TCGA-CD-A4MJ-01 8 59058957 59058957 C T FAM110B Silent p.A56A 0.17 TCGA-CD-A4MJ-01 8 65493706 65493706 C T BHLHE22 Missense_Mutation p.P120L 0.37 tolerated_low_confidence(0.32) benign(0) TCGA-CD-A4MJ-01 8 70970930 70970930 C T PRDM14 Missense_Mutation p.R444Q 0.24 tolerated(0.05) probably_damaging(0.961) TCGA-CD-A4MJ-01 8 71033565 71033565 A C NCOA2 Missense_Mutation p.M1452R 0.09 deleterious_low_confidence(0) benign(0.052) TCGA-CD-A4MJ-01 8 71057031 71057031 A G NCOA2 Silent p.N886N 0.29 TCGA-CD-A4MJ-01 8 71556377 71556377 G A LACTB2 Missense_Mutation p.T172M 0.21 deleterious(0) probably_damaging(0.932) TCGA-CD-A4MJ-01 8 73480329 73480329 C T KCNB2 Silent p.G120G 0.26 TCGA-CD-A4MJ-01 8 77764978 77764978 G A ZFHX4 Missense_Mutation p.E1941K 0.18 possibly_damaging(0.502) TCGA-CD-A4MJ-01 8 77767089 77767090 - A ZFHX4 Frame_Shift_Ins p.R2647Kfs*29 0.21 TCGA-CD-A4MJ-01 8 87226664 87226664 A G SLC7A13 Missense_Mutation p.L464P 0.30 tolerated(0.19) benign(0.001) TCGA-CD-A4MJ-01 8 87454932 87454932 G A WWP1 Silent p.L641L 0.29 TCGA-CD-A4MJ-01 8 92983013 92983013 G A RUNX1T1 Missense_Mutation p.A482V 0.26 deleterious(0) probably_damaging(0.955) TCGA-CD-A4MJ-01 8 95686611 95686611 A - ESRP1 Frame_Shift_Del p.N512Tfs*2 0.41 TCGA-CD-A4MJ-01 9 100617383 100617383 C T FOXE1 3'UTR 0.21 TCGA-CD-A4MJ-01 9 108370221 108370221 G T FKTN Missense_Mutation p.A257S 0.34 tolerated(0.6) benign(0.002) TCGA-CD-A4MJ-01 9 111753119 111753119 C T CTNNAL1 Missense_Mutation p.A176T 0.12 tolerated(0.41) benign(0.01) TCGA-CD-A4MJ-01 9 112705051 112705051 G - PALM2 Frame_Shift_Del p.V196Sfs*15 0.33 TCGA-CD-A4MJ-01 9 117266506 117266506 G A DFNB31 Silent p.N192N 0.09 TCGA-CD-A4MJ-01 9 117826201 117826201 T C TNC Missense_Mutation p.T1212A 0.29 deleterious(0.03) possibly_damaging(0.824) TCGA-CD-A4MJ-01 9 120475243 120475243 C T TLR4 Silent p.G279G 0.32 TCGA-CD-A4MJ-01 9 122000973 122000973 G A BRINP1 Silent p.S215S 0.20 TCGA-CD-A4MJ-01 9 127456057 127456057 A G NR6A1 Intron 0.22 TCGA-CD-A4MJ-01 9 128728292 128728292 A C PBX3 3'UTR 0.35 TCGA-CD-A4MJ-01 9 131007081 131007081 T C DNM1 Intron 0.12 TCGA-CD-A4MJ-01 9 131885404 131885404 A G PPP2R4 Missense_Mutation p.Y68C 0.36 tolerated(0.27) benign(0.008) TCGA-CD-A4MJ-01 9 133339540 133339541 - C ASS1 Frame_Shift_Ins p.Q138Pfs*12 0.31 TCGA-CD-A4MJ-01 9 133579288 133579288 G A EXOSC2 3'UTR 0.22 TCGA-CD-A4MJ-01 9 137694781 137694781 G A COL5A1 Silent p.G1018G 0.32 TCGA-CD-A4MJ-01 9 137808227 137808227 G C FCN1 Missense_Mutation p.P62A 0.32 tolerated(0.06) possibly_damaging(0.461) TCGA-CD-A4MJ-01 9 138903343 138903343 C T NACC2 3'UTR 0.20 TCGA-CD-A4MJ-01 9 139252611 139252611 C T GPSM1 Missense_Mutation p.P656L 0.30 tolerated(0.06) possibly_damaging(0.644) TCGA-CD-A4MJ-01 9 139350543 139350543 A G SEC16A Missense_Mutation p.W1876R 0.23 deleterious(0) probably_damaging(0.997) TCGA-CD-A4MJ-01 9 139935551 139935551 C T NPDC1 Silent p.P116P 0.44 TCGA-CD-A4MJ-01 9 140174421 140174421 G A TOR4A 3'UTR 0.27 TCGA-CD-A4MJ-01 9 18770611 18770611 G A ADAMTSL1 Silent p.T743T 0.29 TCGA-CD-A4MJ-01 9 27294316 27294316 T - EQTN Frame_Shift_Del p.N96Tfs*43 0.30 TCGA-CD-A4MJ-01 9 33675365 33675365 A - PTENP1 RNA 0.39 TCGA-CD-A4MJ-01 9 34372397 34372397 G A KIAA1161 Missense_Mutation p.A148V 0.40 tolerated(0.31) benign(0.007) TCGA-CD-A4MJ-01 9 37729812 37729812 C T FRMPD1 Missense_Mutation p.R234W 0.28 deleterious(0) probably_damaging(0.932) TCGA-CD-A4MJ-01 9 730125 730125 C T KANK1 Missense_Mutation p.P925S 0.08 tolerated(0.79) benign(0.001) TCGA-CD-A4MJ-01 9 73250128 73250128 T - TRPM3 Frame_Shift_Del p.K544Rfs*12 0.36 TCGA-CD-A4MJ-01 9 75407203 75407203 C T TMC1 Missense_Mutation p.P501S 0.28 tolerated(0.14) benign(0.041) TCGA-CD-A4MJ-01 9 79852980 79852980 G A VPS13A Missense_Mutation p.R553H 0.08 tolerated(0.58) benign(0.001) TCGA-CD-A4MJ-01 9 85637257 85637257 C T RASEF Silent p.R221R 0.31 TCGA-CD-A4MJ-01 X 107316600 107316600 G A VSIG1 Splice_Site p.X266_splice 0.04 TCGA-CD-A4MJ-01 X 107423854 107423854 T C COL4A6 Splice_Site p.X676_splice 0.09 TCGA-CD-A4MJ-01 X 118679451 118679451 G A CXorf56 Nonsense_Mutation p.R87* 0.75 TCGA-CD-A4MJ-01 X 134294464 134294464 C T CT55 Missense_Mutation p.R99H 0.07 tolerated(0.17) benign(0) TCGA-CD-A4MJ-01 X 135318405 135318405 C T MAP7D3 Missense_Mutation p.R245H 0.61 tolerated(0.12) benign(0.083) TCGA-CD-A4MJ-01 X 140983061 140983061 T A MAGEC3 Missense_Mutation p.S306T 0.53 tolerated(0.07) benign(0.418) TCGA-CD-A4MJ-01 X 152860068 152860068 C G FAM58A Silent p.V120V 0.59 TCGA-CD-A4MJ-01 X 153071526 153071526 C A PDZD4 Missense_Mutation p.Q183H 0.54 deleterious(0) probably_damaging(0.997) TCGA-CD-A4MJ-01 X 153129872 153129872 G A L1CAM Missense_Mutation p.T1076M 0.63 tolerated(0.16) benign(0.283) TCGA-CD-A4MJ-01 X 153609114 153609114 T C EMD Missense_Mutation p.V134A 0.69 tolerated(0.14) benign(0.338) TCGA-CD-A4MJ-01 X 19375832 19375832 A C PDHA1 Silent p.G336G 0.68 TCGA-CD-A4MJ-01 X 21887618 21887618 C A MBTPS2 Missense_Mutation p.D264E 0.64 tolerated(0.07) benign(0.3) TCGA-CD-A4MJ-01 X 221747 221747 T C GTPBP6 Silent p.P286P 0.14 TCGA-CD-A4MJ-01 X 41586414 41586415 - A GPR82 Frame_Shift_Ins p.T48Nfs*88 0.57 TCGA-CD-A4MJ-01 X 50377350 50377350 G A SHROOM4 Missense_Mutation p.R575W 0.50 deleterious(0.01) probably_damaging(0.991) TCGA-CD-A4MJ-01 X 55116486 55116486 C A PAGE2 Silent p.S11S 0.10 TCGA-CD-A4MJ-01 X 66941796 66941796 T G AR Missense_Mutation p.F814V 0.47 deleterious(0) probably_damaging(0.934) TCGA-CD-A4MJ-01 X 69283211 69283211 C T OTUD6A Silent p.A279A 0.46 TCGA-CD-A4MJ-01 X 6968351 6968351 G A HDHD1 Missense_Mutation p.P248S 0.23 deleterious(0) probably_damaging(0.996) TCGA-CD-A4MJ-01 X 70320703 70320703 G A FOXO4 Missense_Mutation p.R208H 0.81 deleterious(0) probably_damaging(0.999) TCGA-CD-A4MJ-01 X 71800983 71800983 C T PHKA1 Missense_Mutation p.A1181T 0.14 tolerated(0.08) benign(0.024) TCGA-CD-A4MJ-01 X 8522053 8522053 C T KAL1 Missense_Mutation p.G432R 0.63 deleterious(0.03) benign(0.134) TCGA-CD-A4MJ-01 X 92964587 92964587 G A FAM133A Missense_Mutation p.A57T 0.68 tolerated_low_confidence(0.07) possibly_damaging(0.646) TCGA-CD-A4MJ-01 Y 16734098 16734098 C A NLGN4Y Silent p.A33A 0.44 TCGA-CG-4300-01 10 101636802 101636802 C T DNMBP 3'UTR 0.33 TCGA-CG-4300-01 10 106959784 106959784 C T SORCS3 Silent p.S679S 0.05 TCGA-CG-4300-01 10 108338883 108338883 C T SORCS1 Silent p.Q1166Q 0.06 TCGA-CG-4300-01 10 123274680 123274680 G C FGFR2 Missense_Mutation p.P414R 0.04 tolerated(0.1) probably_damaging(1) TCGA-CG-4300-01 10 27687305 27687305 G C PTCHD3 Nonsense_Mutation p.S741* 0.05 TCGA-CG-4300-01 10 50531052 50531052 G T C10orf71 Missense_Mutation p.E154D 0.17 deleterious(0.04) benign(0.333) TCGA-CG-4300-01 10 70097142 70097160 TTGTTTTACTGTTTTTAAT - HNRNPH3 Intron 0.46 TCGA-CG-4300-01 10 75552483 75552483 A G ZSWIM8 Missense_Mutation p.Y729C 0.25 deleterious(0) probably_damaging(0.998) TCGA-CG-4300-01 10 96025643 96025643 C T PLCE1 Silent p.I1403I 0.09 TCGA-CG-4300-01 11 1261524 1261524 A T MUC5B Missense_Mutation p.R1297W 0.27 unknown(0) TCGA-CG-4300-01 11 14515257 14515257 C T COPB1 Missense_Mutation p.R141H 0.05 deleterious(0.01) probably_damaging(0.967) TCGA-CG-4300-01 11 14865418 14865418 C T PDE3B Missense_Mutation p.S789L 0.04 deleterious(0) probably_damaging(0.999) TCGA-CG-4300-01 11 290921 290921 C G ATHL1 Silent p.L238L 0.06 TCGA-CG-4300-01 11 55595405 55595405 T C OR5L2 Silent p.A237A 0.03 TCGA-CG-4300-01 11 56043937 56043937 A C OR5T1 Missense_Mutation p.S275R 0.06 deleterious(0.02) benign(0.337) TCGA-CG-4300-01 11 56185581 56185581 A C OR5R1 Missense_Mutation p.L43R 0.05 deleterious(0) possibly_damaging(0.453) TCGA-CG-4300-01 11 64359339 64359339 C T SLC22A12 Missense_Mutation p.T104M 0.26 tolerated(0.06) benign(0.104) TCGA-CG-4300-01 11 92086909 92086909 G A FAT3 Missense_Mutation p.R544K 0.29 benign(0.407) TCGA-CG-4300-01 11 93527121 93527121 C T MED17 Missense_Mutation p.S260L 0.15 tolerated(0.35) benign(0.039) TCGA-CG-4300-01 12 26217702 26217702 G T RASSF8 Silent p.P125P 0.08 TCGA-CG-4300-01 12 29423406 29423406 T G FAR2 Nonsense_Mutation p.Y8* 0.48 TCGA-CG-4300-01 12 41327301 41327301 T C CNTN1 Missense_Mutation p.F248L 0.08 deleterious(0) probably_damaging(0.991) TCGA-CG-4300-01 12 46598091 46598091 T G SLC38A1 Missense_Mutation p.N272T 0.10 tolerated(0.08) benign(0.282) TCGA-CG-4300-01 12 53663425 53663425 G A ESPL1 Silent p.V233V 0.15 TCGA-CG-4300-01 12 57005592 57005592 T C BAZ2A Missense_Mutation p.E527G 0.12 deleterious(0.03) benign(0.146) TCGA-CG-4300-01 12 94645229 94645229 G A PLXNC1 Missense_Mutation p.V936I 0.06 deleterious(0.04) benign(0.233) TCGA-CG-4300-01 12 96330276 96330276 A G CCDC38 Silent p.N4N 0.34 TCGA-CG-4300-01 13 50502102 50502102 T C SPRYD7 Missense_Mutation p.K115E 0.05 tolerated(0.8) possibly_damaging(0.601) TCGA-CG-4300-01 13 96274652 96274654 TCT - DZIP1 In_Frame_Del p.E351del 0.08 TCGA-CG-4300-01 14 21928450 21928450 G A RAB2B 3'UTR 0.15 TCGA-CG-4300-01 14 52981665 52981665 C T TXNDC16 Missense_Mutation p.A180T 0.41 deleterious(0) probably_damaging(1) TCGA-CG-4300-01 14 64935787 64935787 G C AKAP5 Silent p.T225T 0.18 TCGA-CG-4300-01 14 78353526 78353526 G A ADCK1 Silent p.T172T 0.05 TCGA-CG-4300-01 15 37184392 37184392 C T MEIS2 Missense_Mutation p.M472I 0.07 tolerated_low_confidence(0.1) benign(0.007) TCGA-CG-4300-01 15 50570826 50570826 C G GABPB1 3'UTR 0.22 TCGA-CG-4300-01 15 76632641 76632641 C T ISL2 Missense_Mutation p.A179V 0.37 tolerated(0.11) benign(0.001) TCGA-CG-4300-01 15 77473300 77473300 A G PEAK1 Silent p.N323N 0.05 TCGA-CG-4300-01 15 93563419 93563419 C A CHD2 Missense_Mutation p.S1695Y 0.06 deleterious_low_confidence(0.02) possibly_damaging(0.687) TCGA-CG-4300-01 16 11444592 11444592 T C RMI2 Missense_Mutation p.I130T 0.09 tolerated(0.1) possibly_damaging(0.616) TCGA-CG-4300-01 16 11876318 11876318 C T ZC3H7A 5'UTR 0.11 TCGA-CG-4300-01 16 1272676 1272676 C T TPSG1 Missense_Mutation p.G163S 0.17 deleterious(0.04) probably_damaging(1) TCGA-CG-4300-01 16 28837136 28837136 G A ATXN2L Missense_Mutation p.G147S 0.29 deleterious(0) probably_damaging(0.976) TCGA-CG-4300-01 16 30666245 30666245 T A PRR14 Missense_Mutation p.N318K 0.46 deleterious_low_confidence(0.02) benign(0.167) TCGA-CG-4300-01 16 50345962 50345962 C T ADCY7 Missense_Mutation p.R822C 0.26 deleterious(0) probably_damaging(1) TCGA-CG-4300-01 16 9017167 9017167 T C USP7 Silent p.P96P 0.50 TCGA-CG-4300-01 17 18907189 18907189 G A FAM83G Nonsense_Mutation p.R56* 0.37 TCGA-CG-4300-01 17 27277196 27277198 CTT - PHF12 In_Frame_Del p.K45del 0.39 TCGA-CG-4300-01 17 39340975 39340975 G T KRTAP4-1 Nonsense_Mutation p.C44* 0.08 TCGA-CG-4300-01 17 39340982 39340982 G T KRTAP4-1 Missense_Mutation p.S42Y 0.08 deleterious(0) probably_damaging(0.953) TCGA-CG-4300-01 17 39597030 39597030 G A KRT38 Silent p.N48N 0.03 TCGA-CG-4300-01 17 39659306 39659306 C T KRT13 Silent p.V260V 0.06 TCGA-CG-4300-01 17 7577534 7577534 C A TP53 Missense_Mutation p.R249S 0.44 deleterious(0) probably_damaging(0.994) TCGA-CG-4300-01 17 9503482 9503482 G A WDR16 Silent p.A245A 0.31 TCGA-CG-4300-01 18 21098916 21098916 C T C18orf8 Missense_Mutation p.A239V 0.13 deleterious(0.02) benign(0.167) TCGA-CG-4300-01 19 10610425 10610425 G T KEAP1 Silent p.A95A 0.24 TCGA-CG-4300-01 19 11485533 11485533 C T SWSAP1 Silent p.L38L 0.04 TCGA-CG-4300-01 19 16308836 16308836 T C AP1M1 5'UTR 0.40 TCGA-CG-4300-01 19 18555639 18555639 A G ELL Missense_Mutation p.Y597H 0.19 deleterious(0) probably_damaging(0.981) TCGA-CG-4300-01 19 40151153 40151153 G A LGALS16 Missense_Mutation p.R141Q 0.38 tolerated_low_confidence(0.37) benign(0.006) TCGA-CG-4300-01 19 4433127 4433127 G A CHAF1A Missense_Mutation p.R755Q 0.09 tolerated(0.82) benign(0.087) TCGA-CG-4300-01 19 53209605 53209605 T C ZNF611 Missense_Mutation p.K235E 0.06 tolerated(1) benign(0) TCGA-CG-4300-01 19 53209635 53209635 G A ZNF611 Missense_Mutation p.H225Y 0.06 tolerated(0.06) benign(0.005) TCGA-CG-4300-01 19 53958797 53958797 C T ZNF761 RNA 0.06 TCGA-CG-4300-01 19 55019214 55019214 T G LAIR2 Missense_Mutation p.L60R 0.04 deleterious(0) probably_damaging(1) TCGA-CG-4300-01 19 58101605 58101605 G T ZIK1 Missense_Mutation p.K142N 0.04 deleterious(0.01) benign(0.074) TCGA-CG-4300-01 19 621655 621655 C T POLRMT Silent p.Q681Q 0.22 TCGA-CG-4300-01 1 109514146 109514146 T A WDR47 Missense_Mutation p.D897V 0.20 deleterious(0) probably_damaging(1) TCGA-CG-4300-01 1 112298505 112298505 C T DDX20 5'UTR 0.15 TCGA-CG-4300-01 1 152671534 152671534 G A LCE2A Missense_Mutation p.G53S 0.19 tolerated_low_confidence(0.55) unknown(0) TCGA-CG-4300-01 1 155154567 155154567 G A TRIM46 Missense_Mutation p.G610R 0.13 deleterious(0) probably_damaging(1) TCGA-CG-4300-01 1 155785747 155785747 T C GON4L Intron 0.30 TCGA-CG-4300-01 1 196300297 196300297 T C KCNT2 Missense_Mutation p.R698G 0.16 deleterious(0) possibly_damaging(0.784) TCGA-CG-4300-01 1 197072455 197072455 T A ASPM Missense_Mutation p.I1976F 0.05 deleterious(0.01) possibly_damaging(0.905) TCGA-CG-4300-01 1 197390846 197390846 T G CRB1 Missense_Mutation p.F630V 0.06 tolerated(0.2) benign(0.002) TCGA-CG-4300-01 1 228404777 228404777 C T OBSCN Missense_Mutation p.P814L 0.20 benign(0.031) TCGA-CG-4300-01 1 2415915 2415915 C T PLCH2 Missense_Mutation p.T198M 0.41 deleterious(0.02) benign(0.26) TCGA-CG-4300-01 1 244735822 244735822 T A C1orf101 Nonsense_Mutation p.Y566* 0.22 TCGA-CG-4300-01 1 27223867 27223867 A G GPATCH3 Silent p.D267D 0.07 TCGA-CG-4300-01 1 29644433 29644433 C T PTPRU Silent p.D1239D 0.14 TCGA-CG-4300-01 1 53580662 53580662 G A SLC1A7 Intron 0.21 TCGA-CG-4300-01 1 68512741 68512741 G T DIRAS3 Nonsense_Mutation p.C80* 0.27 TCGA-CG-4300-01 20 1281207 1281207 C T SNPH Missense_Mutation p.R54C 0.16 deleterious(0) probably_damaging(0.997) TCGA-CG-4300-01 20 2592836 2592836 G A TMC2 Splice_Site p.X532_splice 0.03 TCGA-CG-4300-01 20 2634917 2634917 C A NOP56 Intron 0.28 TCGA-CG-4300-01 20 30686829 30686829 G A HCK Nonsense_Mutation p.W423* 0.05 TCGA-CG-4300-01 20 40045389 40045389 A C CHD6 Missense_Mutation p.L2109V 0.21 deleterious(0) probably_damaging(0.997) TCGA-CG-4300-01 20 62038567 62038567 G A KCNQ2 Silent p.H683H 0.23 TCGA-CG-4300-01 21 15599341 15599341 C A RBM11 Missense_Mutation p.H191Q 0.22 tolerated(0.31) unknown(0) TCGA-CG-4300-01 22 18082836 18082836 C T ATP6V1E1 Missense_Mutation p.R131Q 0.05 tolerated(0.48) benign(0.001) TCGA-CG-4300-01 22 39714449 39714449 G A RPL3 Missense_Mutation p.A51V 0.46 deleterious(0.01) possibly_damaging(0.88) TCGA-CG-4300-01 22 50904409 50904409 G A SBF1 Missense_Mutation p.T331M 0.42 tolerated(0.09) probably_damaging(0.977) TCGA-CG-4300-01 2 122494398 122494415 GGCCCAGCCGGGCCAGAA - NIFK In_Frame_Del p.F4_P10delinsL 0.19 TCGA-CG-4300-01 2 131128152 131128152 G A PTPN18 Missense_Mutation p.V238I 0.07 deleterious(0) possibly_damaging(0.874) TCGA-CG-4300-01 2 131904309 131904309 C T PLEKHB2 Missense_Mutation p.T219M 0.21 tolerated(0.08) possibly_damaging(0.588) TCGA-CG-4300-01 2 153032191 153032191 A C STAM2 5'UTR 0.55 TCGA-CG-4300-01 2 157185018 157185018 C T NR4A2 Missense_Mutation p.V298M 0.07 deleterious(0.01) probably_damaging(1) TCGA-CG-4300-01 2 179445340 179445340 T C TTN Intron 0.14 TCGA-CG-4300-01 2 216232683 216232683 G A FN1 Silent p.A2307A 0.06 TCGA-CG-4300-01 2 220091655 220091655 C T ATG9A Missense_Mutation p.V50I 0.17 tolerated(0.75) benign(0.002) TCGA-CG-4300-01 2 226447571 226447571 G A NYAP2 Missense_Mutation p.V480M 0.16 tolerated(0.07) benign(0.019) TCGA-CG-4300-01 2 24964989 24964989 G C NCOA1 Missense_Mutation p.G1214R 0.07 deleterious(0.01) probably_damaging(1) TCGA-CG-4300-01 2 26350778 26350778 C T RAB10 Silent p.I159I 0.15 TCGA-CG-4300-01 2 26695389 26695389 C T OTOF Missense_Mutation p.A1288T 0.33 tolerated(0.26) benign(0.148) TCGA-CG-4300-01 2 73053091 73053091 T C EXOC6B 5'UTR 0.10 TCGA-CG-4300-01 2 73680445 73680445 C T ALMS1 Missense_Mutation p.T2263I 0.05 probably_damaging(0.954) TCGA-CG-4300-01 3 118948741 118948741 G A B4GALT4 Missense_Mutation p.T69M 0.35 tolerated(0.15) benign(0.003) TCGA-CG-4300-01 3 121305435 121305435 G T ARGFX Missense_Mutation p.L312F 0.05 tolerated(1) benign(0) TCGA-CG-4300-01 3 125854391 125854391 G A ALDH1L1 Missense_Mutation p.R497W 0.17 deleterious(0) possibly_damaging(0.681) TCGA-CG-4300-01 3 126139048 126139048 A G CCDC37 Missense_Mutation p.E353G 0.27 tolerated(0.4) benign(0.001) TCGA-CG-4300-01 3 148927978 148927978 C T CP Missense_Mutation p.G195R 0.06 deleterious(0) probably_damaging(1) TCGA-CG-4300-01 3 167183334 167183334 A C SERPINI2 Missense_Mutation p.N202K 0.26 tolerated(0.33) benign(0.01) TCGA-CG-4300-01 3 172241149 172241149 C T TNFSF10 Missense_Mutation p.G9E 0.07 deleterious_low_confidence(0.01) possibly_damaging(0.798) TCGA-CG-4300-01 3 27152707 27152707 A G NEK10 3'UTR 0.22 TCGA-CG-4300-01 3 38888949 38888949 C A SCN11A Missense_Mutation p.A1538S 0.29 tolerated(0.1) benign(0.018) TCGA-CG-4300-01 3 56114990 56114990 A C ERC2 Missense_Mutation p.L499R 0.09 deleterious(0) probably_damaging(0.998) TCGA-CG-4300-01 3 56657392 56657392 A - FAM208A 3'UTR 0.20 TCGA-CG-4300-01 4 102783799 102783799 A C BANK1 Missense_Mutation p.K247N 0.10 tolerated(0.31) benign(0.004) TCGA-CG-4300-01 4 159091520 159091520 G A FAM198B Intron 0.31 TCGA-CG-4300-01 4 177084327 177084327 G A WDR17 Missense_Mutation p.R982H 0.44 deleterious(0) probably_damaging(0.997) TCGA-CG-4300-01 4 40356537 40356537 G T CHRNA9 Nonstop_Mutation p.*480Yext*10 0.37 TCGA-CG-4300-01 4 84230609 84230609 A - HPSE Frame_Shift_Del p.L311* 0.12 TCGA-CG-4300-01 5 101583042 101583042 C T SLCO4C1 Silent p.A575A 0.22 TCGA-CG-4300-01 5 110409342 110409342 A G TSLP Missense_Mutation p.Q117R 0.07 deleterious(0.01) benign(0.15) TCGA-CG-4300-01 5 137454573 137454573 T C NME5 Silent p.L163L 0.11 TCGA-CG-4300-01 5 137680803 137680803 G C FAM53C Missense_Mutation p.W142C 0.09 deleterious(0) probably_damaging(0.95) TCGA-CG-4300-01 5 137902355 137902355 G C HSPA9 Missense_Mutation p.A311G 0.06 deleterious_low_confidence(0.01) probably_damaging(0.995) TCGA-CG-4300-01 5 140590450 140590450 G A PCDHB12 Silent p.T657T 0.06 TCGA-CG-4300-01 5 140595078 140595078 C T PCDHB13 Silent p.R461R 0.31 TCGA-CG-4300-01 5 140596015 140596015 T G PCDHB13 Missense_Mutation p.F774V 0.04 tolerated_low_confidence(0.11) benign(0.002) TCGA-CG-4300-01 5 14368883 14368883 G A TRIO Missense_Mutation p.D981N 0.05 possibly_damaging(0.837) TCGA-CG-4300-01 5 156381444 156381444 G A TIMD4 Missense_Mutation p.R128C 0.26 deleterious(0) probably_damaging(0.978) TCGA-CG-4300-01 5 161530999 161530999 A C GABRG2 Silent p.R286R 0.09 TCGA-CG-4300-01 5 172744700 172744700 G A STC2 3'UTR 0.19 TCGA-CG-4300-01 5 3600751 3600751 G T IRX1 Silent p.S447S 0.04 TCGA-CG-4300-01 5 3600752 3600752 C T IRX1 Missense_Mutation p.P448S 0.04 deleterious(0.01) benign(0.048) TCGA-CG-4300-01 5 6616908 6616908 T C NSUN2 Missense_Mutation p.Y318C 0.08 deleterious(0) probably_damaging(1) TCGA-CG-4300-01 5 74721289 74721289 C A COL4A3BP Missense_Mutation p.M292I 0.06 tolerated(0.17) possibly_damaging(0.637) TCGA-CG-4300-01 6 112462655 112462655 G A LAMA4 Silent p.Y906Y 0.04 TCGA-CG-4300-01 6 139251228 139251228 C T REPS1 Silent p.G381G 0.17 TCGA-CG-4300-01 6 143093784 143093784 G A HIVEP2 Missense_Mutation p.R698W 0.08 deleterious(0) possibly_damaging(0.863) TCGA-CG-4300-01 6 26598746 26598746 G A ABT1 Missense_Mutation p.R231H 0.09 deleterious(0.02) possibly_damaging(0.548) TCGA-CG-4300-01 6 27834674 27834674 T A HIST1H1B Nonsense_Mutation p.K212* 0.13 TCGA-CG-4300-01 6 4099426 4099426 T A C6orf201 Missense_Mutation p.V93D 0.12 deleterious(0) probably_damaging(0.994) TCGA-CG-4300-01 7 103155636 103155636 A C RELN Silent p.T2705T 0.30 TCGA-CG-4300-01 7 11514005 11514005 T G THSD7A Missense_Mutation p.K736N 0.24 tolerated(0.08) benign(0.298) TCGA-CG-4300-01 7 133884049 133884049 G T LRGUK Missense_Mutation p.E541D 0.08 tolerated(0.08) probably_damaging(0.991) TCGA-CG-4300-01 7 143053722 143053722 G A FAM131B Missense_Mutation p.A335V 0.06 tolerated(0.28) benign(0.034) TCGA-CG-4300-01 7 143657150 143657150 C T OR2F1 Silent p.V29V 0.03 TCGA-CG-4300-01 7 149420837 149420837 C T KRBA1 Missense_Mutation p.A262V 0.28 deleterious(0.03) benign(0.004) TCGA-CG-4300-01 7 154667658 154667658 G A DPP6 Silent p.E642E 0.25 TCGA-CG-4300-01 7 62751991 62751991 G A ZNF733P RNA 0.21 TCGA-CG-4300-01 7 84628757 84628757 T C SEMA3D Nonstop_Mutation p.*778Wext*4 0.05 TCGA-CG-4300-01 7 93540228 93540228 T C GNGT1 Nonstop_Mutation p.*75Qext*22 0.20 TCGA-CG-4300-01 8 116616721 116616721 G A TRPS1 Missense_Mutation p.S492F 0.04 deleterious_low_confidence(0) possibly_damaging(0.684) TCGA-CG-4300-01 8 118847770 118847770 C T EXT1 Missense_Mutation p.M359I 0.17 tolerated(0.15) benign(0.007) TCGA-CG-4300-01 8 143832577 143832577 G A LYPD2 Missense_Mutation p.R24C 0.15 deleterious(0) possibly_damaging(0.551) TCGA-CG-4300-01 8 143921917 143921917 C A GML Missense_Mutation p.R22S 0.08 tolerated(0.77) benign(0) TCGA-CG-4300-01 8 145623313 145623313 G A CPSF1 Silent p.G643G 0.12 TCGA-CG-4300-01 8 42932460 42932461 - AACACCAC FNTA Frame_Shift_Ins p.G249Tfs*21 0.09 TCGA-CG-4300-01 8 75756215 75756215 G T PI15 Splice_Site p.X92_splice 0.09 TCGA-CG-4300-01 8 91657358 91657358 A G TMEM64 Missense_Mutation p.L259P 0.09 deleterious(0) probably_damaging(0.99) TCGA-CG-4300-01 8 99140731 99140731 G A POP1 Missense_Mutation p.R150H 0.04 deleterious(0) probably_damaging(1) TCGA-CG-4300-01 9 109686646 109686646 T G ZNF462 Missense_Mutation p.N151K 0.11 benign(0.403) TCGA-CG-4300-01 9 132637711 132637711 C T USP20 Missense_Mutation p.A724V 0.10 tolerated(0.12) possibly_damaging(0.803) TCGA-CG-4300-01 9 21141013 21141013 C A IFNW1 Missense_Mutation p.R186I 0.53 deleterious(0.01) possibly_damaging(0.884) TCGA-CG-4300-01 9 21239632 21239632 A G IFNA14 Silent p.D101D 0.04 TCGA-CG-4300-01 9 43626680 43626680 T G SPATA31A6 Missense_Mutation p.Q669H 0.16 tolerated(0.63) benign(0.022) TCGA-CG-4300-01 X 135770113 135770113 A C ARHGEF6 Missense_Mutation p.I408S 0.17 tolerated(0.07) benign(0.142) TCGA-CG-4300-01 X 151092504 151092504 G A MAGEA4 Missense_Mutation p.R123H 0.73 tolerated(0.43) benign(0.001) TCGA-CG-4300-01 X 1748789 1748789 C T ASMT Silent p.T173T 0.54 TCGA-CG-4301-01 10 17152954 17152954 T A CUBN Missense_Mutation p.T327S 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-CG-4301-01 10 48438519 48438519 G A GDF10 Silent p.A64A 0.27 TCGA-CG-4301-01 10 52596017 52596017 C A A1CF Missense_Mutation p.G149W 0.22 deleterious(0) probably_damaging(1) TCGA-CG-4301-01 11 108218089 108218089 C G ATM Missense_Mutation p.L2890V 0.23 deleterious(0) probably_damaging(0.999) TCGA-CG-4301-01 11 111613304 111613304 T A PPP2R1B Missense_Mutation p.N547I 0.21 deleterious(0) possibly_damaging(0.851) TCGA-CG-4301-01 11 119045756 119045756 G A NLRX1 Missense_Mutation p.V482M 0.15 deleterious(0) benign(0.333) TCGA-CG-4301-01 11 49597912 49597912 G A RP11-707M1.1 RNA 0.14 TCGA-CG-4301-01 11 67431918 67431918 G A ALDH3B2 Silent p.I274I 0.05 TCGA-CG-4301-01 11 67431927 67431927 G C ALDH3B2 Missense_Mutation p.I271M 0.05 deleterious(0) probably_damaging(0.981) TCGA-CG-4301-01 11 67431978 67431978 G C ALDH3B2 Missense_Mutation p.I254M 0.06 deleterious(0.01) probably_damaging(0.981) TCGA-CG-4301-01 12 125398003 125398003 C G UBC Missense_Mutation p.K105N 0.17 deleterious(0) possibly_damaging(0.808) TCGA-CG-4301-01 12 56733273 56733273 G A IL23A Missense_Mutation p.G76S 0.17 tolerated(0.12) probably_damaging(1) TCGA-CG-4301-01 12 57033084 57033084 T C ATP5B Missense_Mutation p.K432R 0.22 tolerated_low_confidence(0.07) benign(0.021) TCGA-CG-4301-01 13 101936302 101936302 G A NALCN Silent p.R372R 0.28 TCGA-CG-4301-01 13 19751365 19751365 G A TUBA3C Missense_Mutation p.T253M 0.15 deleterious_low_confidence(0.03) possibly_damaging(0.504) TCGA-CG-4301-01 13 35770041 35770041 A C NBEA Missense_Mutation p.E1656D 0.08 tolerated_low_confidence(0.23) benign(0.002) TCGA-CG-4301-01 15 34638164 34638164 G C NUTM1 5'UTR 0.21 TCGA-CG-4301-01 15 73635776 73635776 G A HCN4 Missense_Mutation p.R387C 0.22 deleterious(0) benign(0.133) TCGA-CG-4301-01 16 48201223 48201223 C T ABCC11 Missense_Mutation p.A1371T 0.13 deleterious(0.03) benign(0.032) TCGA-CG-4301-01 17 51900727 51900727 C T KIF2B Silent p.T111T 0.21 TCGA-CG-4301-01 17 77043955 77043955 A G C1QTNF1 Missense_Mutation p.I211V 0.17 tolerated(0.4) benign(0.015) TCGA-CG-4301-01 17 79077849 79077849 C T BAIAP2 Missense_Mutation p.S336F 0.16 tolerated(0.3) possibly_damaging(0.899) TCGA-CG-4301-01 18 18546911 18546911 G C ROCK1 Missense_Mutation p.P1107A 0.13 tolerated(0.48) possibly_damaging(0.573) TCGA-CG-4301-01 18 50734076 50734076 A G DCC Missense_Mutation p.K584E 0.09 tolerated(0.21) benign(0.024) TCGA-CG-4301-01 18 5398076 5398076 G A EPB41L3 Nonsense_Mutation p.R806* 0.23 TCGA-CG-4301-01 19 15379809 15379809 T A BRD4 Silent p.I110I 0.11 TCGA-CG-4301-01 19 17424912 17424912 G A DDA1 Silent p.S28S 0.18 TCGA-CG-4301-01 19 49260235 49260235 C A FGF21 Silent p.V96V 0.10 TCGA-CG-4301-01 19 5220015 5220015 G A PTPRS Missense_Mutation p.R1234W 0.11 deleterious(0) probably_damaging(0.941) TCGA-CG-4301-01 19 52569335 52569335 A C ZNF841 Missense_Mutation p.N600K 0.16 deleterious(0.05) possibly_damaging(0.58) TCGA-CG-4301-01 19 55525822 55525822 G A GP6 Silent p.H497H 0.19 TCGA-CG-4301-01 19 7624011 7624011 G A PNPLA6 Missense_Mutation p.D1235N 0.17 deleterious(0) possibly_damaging(0.737) TCGA-CG-4301-01 1 157665941 157665941 C T FCRL3 Missense_Mutation p.A341T 0.15 tolerated(0.11) possibly_damaging(0.893) TCGA-CG-4301-01 1 174926639 174926639 A G RABGAP1L Missense_Mutation p.M796V 0.13 tolerated(0.15) benign(0.001) TCGA-CG-4301-01 1 245927347 245927347 C G SMYD3 Missense_Mutation p.R394T 0.11 tolerated(0.17) benign(0.004) TCGA-CG-4301-01 1 38003386 38003386 T A SNIP1 Missense_Mutation p.E385V 0.20 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-CG-4301-01 20 56730598 56730598 G A C20orf85 Silent p.P75P 0.11 TCGA-CG-4301-01 21 32253653 32253653 G A KRTAP11-1 Missense_Mutation p.T64I 0.09 tolerated(0.09) benign(0.322) TCGA-CG-4301-01 2 109293101 109293101 C G LIMS1 Missense_Mutation p.H291D 0.10 tolerated(0.06) probably_damaging(0.951) TCGA-CG-4301-01 2 170028593 170028593 C T LRP2 Missense_Mutation p.C3732Y 0.25 probably_damaging(1) TCGA-CG-4301-01 2 174820642 174820642 C A SP3 Nonsense_Mutation p.E200* 0.07 TCGA-CG-4301-01 2 27601052 27601052 C A ZNF513 Missense_Mutation p.S329I 0.24 deleterious(0.03) benign(0.02) TCGA-CG-4301-01 2 42490372 42490372 T A EML4 Missense_Mutation p.D189E 0.16 tolerated(1) benign(0.007) TCGA-CG-4301-01 3 123366073 123366073 C T MYLK Silent p.E1539E 0.19 TCGA-CG-4301-01 3 37370460 37370460 C G GOLGA4 Missense_Mutation p.A2045G 0.17 probably_damaging(0.999) TCGA-CG-4301-01 5 111091582 111091582 C G NREP Intron 0.17 TCGA-CG-4301-01 5 1272312 1272312 G A TERT Silent p.V790V 0.14 TCGA-CG-4301-01 5 131539839 131539839 G A P4HA2 Nonsense_Mutation p.R363* 0.24 TCGA-CG-4301-01 5 140250842 140250842 G A PCDHA11 Silent p.T718T 0.28 TCGA-CG-4301-01 5 78595999 78595999 A G JMY Silent p.T517T 0.08 TCGA-CG-4301-01 5 80626087 80626087 G A ACOT12 3'UTR 0.23 TCGA-CG-4301-01 5 86670727 86670727 G A RASA1 Missense_Mutation p.D669N 0.15 deleterious(0.02) benign(0.272) TCGA-CG-4301-01 6 109286202 109286202 G T ARMC2 Missense_Mutation p.D769Y 0.17 deleterious(0) probably_damaging(0.956) TCGA-CG-4301-01 6 35209384 35209384 C A SCUBE3 Silent p.G420G 0.20 TCGA-CG-4301-01 7 75186058 75186058 G A HIP1 Missense_Mutation p.R547W 0.13 deleterious(0.02) benign(0.248) TCGA-CG-4301-01 7 88964359 88964359 T C ZNF804B Missense_Mutation p.V688A 0.11 tolerated(0.52) benign(0.004) TCGA-CG-4301-01 8 143784759 143784759 C T LY6K Silent p.A156A 0.16 TCGA-CG-4301-01 8 95524295 95524295 G C KIAA1429 Missense_Mutation p.P925R 0.11 tolerated(0.09) benign(0.049) TCGA-CG-4301-01 9 117240980 117240980 G A DFNB31 Silent p.T230T 0.19 TCGA-CG-4301-01 9 140140109 140140109 A T FAM166A Missense_Mutation p.Y85N 0.35 deleterious(0.01) benign(0.393) TCGA-CG-4301-01 9 34976209 34976209 C T KIAA1045 Missense_Mutation p.R209W 0.17 deleterious(0) benign(0.426) TCGA-CG-4301-01 X 129206276 129206276 G A ELF4 Nonsense_Mutation p.Q153* 0.08 TCGA-CG-4301-01 X 47061547 47061554 CTCTGTAG - UBA1 Splice_Site p.X271_splice 0.32 TCGA-CG-4301-01 X 49104740 49104740 C T CCDC22 Missense_Mutation p.P394L 0.24 deleterious(0) probably_damaging(1) TCGA-CG-4301-01 X 51487601 51487601 T G GSPT2 Missense_Mutation p.S293R 0.17 deleterious(0) probably_damaging(0.985) TCGA-CG-4304-01 10 45938960 45938960 C T ALOX5 Silent p.Y516Y 0.25 TCGA-CG-4304-01 11 11400693 11400716 GCCACTGACCCTGGAGCGGATGAG - GALNT18 In_Frame_Del p.L231_G238del 0.45 TCGA-CG-4304-01 11 130109742 130109742 C T ZBTB44 Silent p.T356T 0.23 TCGA-CG-4304-01 11 18956197 18956197 G A MRGPRX1 Silent p.N45N 0.12 TCGA-CG-4304-01 11 26587340 26587340 A G MUC15 Silent p.H49H 0.20 TCGA-CG-4304-01 11 93466636 93466636 G A KIAA1731 3'Flank 0.14 TCGA-CG-4304-01 12 103232939 103232939 T A PAH 3'UTR 0.37 TCGA-CG-4304-01 12 10541450 10541450 A G KLRK1 5'UTR 0.28 TCGA-CG-4304-01 12 122995657 122995657 T C RSRC2 Silent p.A268A 0.11 TCGA-CG-4304-01 12 64488927 64488927 T A SRGAP1 Missense_Mutation p.F541I 0.17 deleterious(0) probably_damaging(0.999) TCGA-CG-4304-01 12 64488928 64488928 T A SRGAP1 Missense_Mutation p.F541Y 0.17 deleterious(0) probably_damaging(0.984) TCGA-CG-4304-01 12 64488929 64488929 C A SRGAP1 Missense_Mutation p.F541L 0.16 deleterious(0) probably_damaging(0.991) TCGA-CG-4304-01 12 69096558 69096558 A - NUP107 Frame_Shift_Del p.V242Lfs*29 0.27 TCGA-CG-4304-01 12 81545584 81545584 A G ACSS3 Intron 0.30 TCGA-CG-4304-01 13 25882042 25882042 G C NUPL1 Missense_Mutation p.G69A 0.25 tolerated(0.45) benign(0.011) TCGA-CG-4304-01 13 36686282 36686282 G T DCLK1 Missense_Mutation p.N149K 0.27 tolerated(0.05) unknown(0) TCGA-CG-4304-01 13 52602650 52602661 GTGCATCTGTAA - ALG11 In_Frame_Del p.A469_S472del 0.27 TCGA-CG-4304-01 13 53216590 53216590 G A HNRNPA1L2 5'UTR 0.32 TCGA-CG-4304-01 13 92345708 92345708 G A GPC5 Missense_Mutation p.R198H 0.32 deleterious(0) possibly_damaging(0.87) TCGA-CG-4304-01 14 35343708 35343708 G - BAZ1A Frame_Shift_Del p.R35Afs*22 0.50 TCGA-CG-4304-01 14 38678850 38678850 T A SSTR1 Missense_Mutation p.Y86N 0.23 deleterious(0) probably_damaging(0.992) TCGA-CG-4304-01 14 58934502 58934502 C G KIAA0586 Silent p.V821V 0.23 TCGA-CG-4304-01 15 65678955 65678955 C T IGDCC4 Missense_Mutation p.G962D 0.23 deleterious(0) probably_damaging(1) TCGA-CG-4304-01 15 90984881 90984881 G A IQGAP1 Missense_Mutation p.A265T 0.31 tolerated(0.1) possibly_damaging(0.632) TCGA-CG-4304-01 15 93567880 93567880 G A CHD2 Missense_Mutation p.R1811K 0.32 tolerated_low_confidence(0.11) benign(0.091) TCGA-CG-4304-01 16 21031006 21031006 C G DNAH3 Missense_Mutation p.D1988H 0.30 deleterious(0.01) benign(0.39) TCGA-CG-4304-01 16 30715408 30715408 C G SRCAP Silent p.G26G 0.23 TCGA-CG-4304-01 16 62055476 62055476 A G CDH8 5'UTR 0.33 TCGA-CG-4304-01 17 10346618 10346618 G A MYH4 3'UTR 0.36 TCGA-CG-4304-01 17 1424883 1424883 G A PITPNA 3'UTR 0.34 TCGA-CG-4304-01 17 3349846 3349846 C G SPATA22 Missense_Mutation p.R241T 0.33 deleterious(0) probably_damaging(0.947) TCGA-CG-4304-01 17 33806710 33806710 T C SLFN12L Silent p.R173R 0.24 TCGA-CG-4304-01 17 37649112 37649112 C T CDK12 Silent p.G739G 0.29 TCGA-CG-4304-01 17 57109276 57109276 A T TRIM37 Silent p.A643A 0.24 TCGA-CG-4304-01 19 11218184 11218184 G T LDLR Nonsense_Mutation p.E312* 0.26 TCGA-CG-4304-01 19 43372329 43372329 G A PSG1 Silent p.S389S 0.33 TCGA-CG-4304-01 19 51021716 51021716 G A LRRC4B Silent p.D418D 0.30 TCGA-CG-4304-01 19 52148732 52148732 G C SIGLEC14 Missense_Mutation p.T251R 0.32 tolerated(0.09) possibly_damaging(0.781) TCGA-CG-4304-01 19 52220238 52220238 C G HAS1 Missense_Mutation p.C304S 0.31 deleterious(0.01) probably_damaging(0.995) TCGA-CG-4304-01 19 7914143 7914143 C T EVI5L Missense_Mutation p.A185V 0.18 deleterious(0) possibly_damaging(0.869) TCGA-CG-4304-01 1 11579853 11579853 C T PTCHD2 Missense_Mutation p.R706C 0.36 deleterious(0.04) possibly_damaging(0.627) TCGA-CG-4304-01 1 149859408 149859408 G A HIST2H2AB Missense_Mutation p.S20F 0.32 deleterious_low_confidence(0.04) unknown(0) TCGA-CG-4304-01 1 159284373 159284373 A C OR10J3 Missense_Mutation p.L26R 0.27 deleterious(0) possibly_damaging(0.635) TCGA-CG-4304-01 1 175067562 175067562 C T TNN Silent p.Y650Y 0.34 TCGA-CG-4304-01 1 183087207 183087207 T A LAMC1 Missense_Mutation p.L639H 0.25 deleterious(0) probably_damaging(0.968) TCGA-CG-4304-01 1 183201456 183201456 G A LAMC2 Silent p.L664L 0.25 TCGA-CG-4304-01 1 220153467 220153467 G A EPRS Missense_Mutation p.T1224I 0.25 deleterious(0) probably_damaging(0.999) TCGA-CG-4304-01 1 22079022 22079022 A C USP48 Silent p.T221T 0.06 TCGA-CG-4304-01 1 3396111 3396112 CA - ARHGEF16 Frame_Shift_Del p.H617Qfs*2 0.36 TCGA-CG-4304-01 1 79404873 79404873 T A ELTD1 Missense_Mutation p.K132N 0.36 tolerated(0.11) benign(0.014) TCGA-CG-4304-01 1 86591429 86591429 A G COL24A1 Missense_Mutation p.F197S 0.40 deleterious(0.05) possibly_damaging(0.476) TCGA-CG-4304-01 20 16730657 16730657 T C OTOR Splice_Site p.X121_splice 0.20 TCGA-CG-4304-01 20 23472436 23472436 C T CST8 Silent p.N44N 0.23 TCGA-CG-4304-01 20 48124559 48124559 G C PTGIS Missense_Mutation p.I467M 0.19 tolerated(0.22) benign(0.009) TCGA-CG-4304-01 21 39086934 39086934 C T KCNJ6 Missense_Mutation p.V176M 0.30 deleterious(0) possibly_damaging(0.639) TCGA-CG-4304-01 21 47664820 47664820 G A MCM3AP Missense_Mutation p.L1647F 0.19 tolerated(0.06) possibly_damaging(0.726) TCGA-CG-4304-01 22 24583266 24583266 T G SUSD2 Missense_Mutation p.V580G 0.23 deleterious(0) probably_damaging(0.967) TCGA-CG-4304-01 22 41923306 41923306 G A ACO2 Silent p.R656R 0.18 TCGA-CG-4304-01 22 46658193 46658193 C T PKDREJ Missense_Mutation p.D343N 0.24 tolerated(0.27) benign(0.014) TCGA-CG-4304-01 2 107459775 107459775 C T ST6GAL2 Missense_Mutation p.R220H 0.33 probably_damaging(0.975) TCGA-CG-4304-01 2 180309654 180309654 C T ZNF385B Silent p.K382K 0.21 TCGA-CG-4304-01 2 196749409 196749409 G A DNAH7 Missense_Mutation p.T1888M 0.24 tolerated(0.17) benign(0.004) TCGA-CG-4304-01 2 238249780 238249780 G C COL6A3 Missense_Mutation p.I2593M 0.34 unknown(0) TCGA-CG-4304-01 2 51255085 51255085 A C NRXN1 Silent p.V109V 0.24 TCGA-CG-4304-01 3 111828417 111828417 T G C3orf52 Intron 0.29 TCGA-CG-4304-01 3 122459177 122459177 C T HSPBAP1 3'UTR 0.26 TCGA-CG-4304-01 3 1337484 1337484 T G CNTN6 Silent p.T218T 0.31 TCGA-CG-4304-01 3 54871251 54871251 C T CACNA2D3 Silent p.N488N 0.22 TCGA-CG-4304-01 3 98001983 98001984 - A OR5H2 Frame_Shift_Ins p.M86Nfs*4 0.25 TCGA-CG-4304-01 4 82355019 82355019 G A RASGEF1B Silent p.L433L 0.31 TCGA-CG-4304-01 4 984125 984125 C A SLC26A1 Missense_Mutation p.G201V 0.25 deleterious(0) probably_damaging(1) TCGA-CG-4304-01 5 137089636 137089636 C T HNRNPA0 Silent p.V40V 0.39 TCGA-CG-4304-01 5 180040051 180040051 C T FLT4 Missense_Mutation p.G1131S 0.25 deleterious(0) probably_damaging(1) TCGA-CG-4304-01 6 26124688 26124688 G C HIST1H2AC Missense_Mutation p.K76N 0.24 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-CG-4304-01 6 27860703 27860703 T C HIST1H2AM Silent p.K75K 0.15 TCGA-CG-4304-01 6 40359893 40359893 C T LRFN2 Missense_Mutation p.R720H 0.35 tolerated(0.38) probably_damaging(0.959) TCGA-CG-4304-01 7 157414082 157414082 G A PTPRN2 Silent p.P772P 0.23 TCGA-CG-4304-01 7 70231198 70231198 G A AUTS2 Missense_Mutation p.E523K 0.18 deleterious(0.01) probably_damaging(0.997) TCGA-CG-4304-01 7 82764926 82764926 C G PCLO Missense_Mutation p.G647A 0.17 unknown(0) TCGA-CG-4304-01 8 131088602 131088602 G T ASAP1 Missense_Mutation p.P898H 0.21 deleterious(0) probably_damaging(0.99) TCGA-CG-4304-01 8 145773557 145773557 G A ARHGAP39 Missense_Mutation p.R305C 0.34 deleterious(0) probably_damaging(0.988) TCGA-CG-4304-01 8 20110556 20110556 C T LZTS1 Missense_Mutation p.E296K 0.18 deleterious(0) benign(0.386) TCGA-CG-4304-01 8 68993021 68993021 A G PREX2 Missense_Mutation p.D609G 0.35 deleterious(0.01) benign(0.341) TCGA-CG-4304-01 8 87567198 87567198 C T CPNE3 Nonsense_Mutation p.Q414* 0.22 TCGA-CG-4304-01 9 125551994 125551994 C A OR5C1 Missense_Mutation p.F261L 0.23 deleterious(0) probably_damaging(0.994) TCGA-CG-4304-01 9 88632418 88632418 C T NAA35 Missense_Mutation p.P571S 0.10 tolerated(0.1) benign(0.41) TCGA-CG-4304-01 9 96438029 96438029 C T PHF2 Silent p.I930I 0.16 TCGA-CG-4304-01 X 11162203 11162252 CCCCGGGGCCGCGTCCTCTTGCATAGCCAGCAGGGAGCGCTCAGACAGCA - ARHGAP6 Frame_Shift_Del p.V675Gfs*69 0.60 TCGA-CG-4304-01 X 11162252 11162252 A C ARHGAP6 Missense_Mutation p.V675G 0.36 deleterious(0) probably_damaging(0.969) TCGA-CG-4304-01 X 83128123 83128123 G C CYLC1 Missense_Mutation p.G136A 0.52 tolerated(0.18) possibly_damaging(0.886) TCGA-CG-4305-01 10 101147615 101147615 C T CNNM1 Silent p.C793C 0.11 TCGA-CG-4305-01 10 101157324 101157324 C T GOT1 Missense_Mutation p.A408T 0.18 tolerated(0.23) benign(0.045) TCGA-CG-4305-01 10 103826348 103826348 G T HPS6 Missense_Mutation p.G373W 0.19 deleterious(0) probably_damaging(0.979) TCGA-CG-4305-01 10 103908180 103908180 G A PPRC1 Silent p.S1484S 0.20 TCGA-CG-4305-01 10 103919311 103919311 T C NOLC1 Missense_Mutation p.M282T 0.11 tolerated_low_confidence(0.28) benign(0) TCGA-CG-4305-01 10 112838327 112838327 C T ADRA2A Silent p.G191G 0.32 TCGA-CG-4305-01 10 114925566 114925566 C T TCF7L2 Silent p.S548S 0.20 TCGA-CG-4305-01 10 115356939 115356939 T C NRAP Missense_Mutation p.K1446R 0.21 tolerated(0.07) possibly_damaging(0.45) TCGA-CG-4305-01 10 116603678 116603678 T C FAM160B1 Missense_Mutation p.V332A 0.14 tolerated(0.14) benign(0.14) TCGA-CG-4305-01 10 127697969 127697969 A - FANK1 Frame_Shift_Del p.K336Sfs*25 0.21 TCGA-CG-4305-01 10 129536818 129536818 C T FOXI2 Silent p.C182C 0.19 TCGA-CG-4305-01 10 13239741 13239741 A - MCM10 Frame_Shift_Del p.N701Tfs*35 0.21 TCGA-CG-4305-01 10 134218255 134218255 C - PWWP2B Frame_Shift_Del p.P86Lfs*100 0.29 TCGA-CG-4305-01 10 134942261 134942261 G A GPR123 Missense_Mutation p.R310H 0.19 deleterious(0) probably_damaging(0.999) TCGA-CG-4305-01 10 18254553 18254554 - C SLC39A12 Frame_Shift_Ins p.D231Rfs*39 0.17 TCGA-CG-4305-01 10 18828201 18828201 C T CACNB2 Missense_Mutation p.R511C 0.18 tolerated(0.07) possibly_damaging(0.677) TCGA-CG-4305-01 10 18828645 18828645 C T CACNB2 Missense_Mutation p.R659C 0.16 deleterious_low_confidence(0) possibly_damaging(0.556) TCGA-CG-4305-01 10 22856622 22856622 C T PIP4K2A Intron 0.19 TCGA-CG-4305-01 10 25887199 25887199 G A GPR158 Missense_Mutation p.A882T 0.22 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 10 27322259 27322259 T - ANKRD26 Frame_Shift_Del p.K1234Nfs*19 0.25 TCGA-CG-4305-01 10 27332489 27332489 T - ANKRD26 Frame_Shift_Del p.N676Tfs*12 0.19 TCGA-CG-4305-01 10 27692254 27692254 G A PTCHD3 Missense_Mutation p.A415V 0.18 deleterious(0) possibly_damaging(0.886) TCGA-CG-4305-01 10 27702568 27702568 G A PTCHD3 Silent p.T204T 0.24 TCGA-CG-4305-01 10 34408562 34408562 C T PARD3 Missense_Mutation p.R1219H 0.14 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-CG-4305-01 10 35929176 35929176 C T FZD8 Silent p.A394A 0.18 TCGA-CG-4305-01 10 38121115 38121117 AGA - ZNF248 In_Frame_Del p.F389del 0.19 TCGA-CG-4305-01 10 43598065 43598065 A G RET Missense_Mutation p.R205G 0.13 tolerated(0.34) benign(0.001) TCGA-CG-4305-01 10 43620416 43620416 A G RET Missense_Mutation p.M1009V 0.26 deleterious(0.01) benign(0.02) TCGA-CG-4305-01 10 44139887 44139887 G A ZNF32 Nonsense_Mutation p.R145* 0.21 TCGA-CG-4305-01 10 45499436 45499439 ACTT - ZNF22 Frame_Shift_Del p.L208Pfs*22 0.15 TCGA-CG-4305-01 10 45799648 45799648 C T OR13A1 Missense_Mutation p.A75T 0.15 tolerated(1) benign(0) TCGA-CG-4305-01 10 61829489 61829489 T G ANK3 Missense_Mutation p.K3717T 0.21 probably_damaging(0.981) TCGA-CG-4305-01 10 61836200 61836200 C T ANK3 Missense_Mutation p.R1480Q 0.17 benign(0.031) TCGA-CG-4305-01 10 6262793 6262793 G - PFKFB3 Frame_Shift_Del p.G267Afs*16 0.27 TCGA-CG-4305-01 10 63850705 63850705 A - ARID5B Frame_Shift_Del p.I497* 0.22 TCGA-CG-4305-01 10 64136336 64136336 C A ZNF365 Silent p.T128T 0.22 TCGA-CG-4305-01 10 64952810 64952810 G A JMJD1C Silent p.S1988S 0.04 TCGA-CG-4305-01 10 64954088 64954088 C T JMJD1C Missense_Mutation p.D1898N 0.22 deleterious(0) probably_damaging(0.954) TCGA-CG-4305-01 10 71158533 71158533 G A HK1 Missense_Mutation p.R857H 0.09 tolerated(0.59) benign(0) TCGA-CG-4305-01 10 72539371 72539371 A G TBATA Silent p.N135N 0.18 TCGA-CG-4305-01 10 73050685 73050685 A G UNC5B Silent p.S371S 0.20 TCGA-CG-4305-01 10 75265090 75265090 T G USP54 Missense_Mutation p.E1382D 0.22 tolerated(0.36) benign(0.004) TCGA-CG-4305-01 10 75434450 75434450 G A AGAP5 Silent p.H656H 0.18 TCGA-CG-4305-01 10 75567582 75567582 G A NDST2 Missense_Mutation p.L189F 0.05 tolerated(0.1) probably_damaging(0.995) TCGA-CG-4305-01 10 81058854 81058854 G A ZMIZ1 Missense_Mutation p.V572M 0.18 probably_damaging(0.992) TCGA-CG-4305-01 10 88260114 88260114 A G WAPAL Missense_Mutation p.Y296H 0.15 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-CG-4305-01 10 89472990 89472990 C T PAPSS2 Missense_Mutation p.R102W 0.21 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 10 89720811 89720812 - A PTEN Frame_Shift_Ins p.N323Kfs*2 0.21 TCGA-CG-4305-01 10 94828126 94828126 C T CYP26C1 Missense_Mutation p.T414M 0.22 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 10 95790648 95790648 C A PLCE1 5'UTR 0.32 TCGA-CG-4305-01 10 97969609 97969609 G A BLNK Missense_Mutation p.P244L 0.18 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 10 99093646 99093646 G T FRAT2 Silent p.P228P 0.27 TCGA-CG-4305-01 10 99371285 99371285 A G HOGA1 Missense_Mutation p.I285V 0.15 tolerated(0.81) benign(0.014) TCGA-CG-4305-01 11 100179261 100179261 A G CNTN5 Intron 0.33 TCGA-CG-4305-01 11 102743788 102743788 T - MMP12 RNA 0.26 TCGA-CG-4305-01 11 102936995 102936995 T C DCUN1D5 Intron 0.16 TCGA-CG-4305-01 11 103091455 103091455 T G DYNC2H1 Missense_Mutation p.L3017R 0.05 probably_damaging(0.999) TCGA-CG-4305-01 11 1031986 1031986 G A MUC6 Silent p.Y61Y 0.23 TCGA-CG-4305-01 11 103907607 103907607 C G PDGFD Intron 0.15 TCGA-CG-4305-01 11 108385274 108385274 C T EXPH5 Silent p.S320S 0.24 TCGA-CG-4305-01 11 110494969 110494969 C T ARHGAP20 Silent p.V140V 0.17 TCGA-CG-4305-01 11 111594578 111594578 G T SIK2 Nonsense_Mutation p.G836* 0.12 TCGA-CG-4305-01 11 113187019 113187019 A T TTC12 Nonsense_Mutation p.K14* 0.14 TCGA-CG-4305-01 11 115088652 115088652 C T CADM1 Missense_Mutation p.D261N 0.18 deleterious(0.03) probably_damaging(0.936) TCGA-CG-4305-01 11 116661524 116661524 C G APOA5 Missense_Mutation p.A141P 0.16 tolerated(0.09) probably_damaging(0.979) TCGA-CG-4305-01 11 118344186 118344186 C - KMT2A Frame_Shift_Del p.P773Rfs*8 0.25 TCGA-CG-4305-01 11 118495754 118495754 C - PHLDB1 Frame_Shift_Del p.Y156Tfs*12 0.26 TCGA-CG-4305-01 11 118851219 118851219 C T FOXR1 Missense_Mutation p.R211W 0.23 tolerated(0.26) probably_damaging(0.994) TCGA-CG-4305-01 11 119045721 119045721 G A NLRX1 Missense_Mutation p.R470H 0.29 deleterious(0) benign(0.013) TCGA-CG-4305-01 11 120201050 120201050 G A TMEM136 Silent p.T210T 0.22 TCGA-CG-4305-01 11 120998548 120998548 G A TECTA Missense_Mutation p.R621Q 0.22 tolerated(0.33) benign(0) TCGA-CG-4305-01 11 121038922 121038922 C T TECTA Silent p.L1916L 0.21 TCGA-CG-4305-01 11 121060508 121060508 C T TECTA Nonsense_Mutation p.Q2096* 0.12 TCGA-CG-4305-01 11 1215491 1215491 G A MUC5AC RNA 0.27 TCGA-CG-4305-01 11 123909507 123909507 C A OR10G7 Missense_Mutation p.D68Y 0.18 deleterious(0) probably_damaging(0.986) TCGA-CG-4305-01 11 124310278 124310278 G T OR8B8 Missense_Mutation p.S235Y 0.21 deleterious_low_confidence(0.04) benign(0.062) TCGA-CG-4305-01 11 125875734 125875735 GT - CDON Frame_Shift_Del p.P591Rfs*29 0.23 TCGA-CG-4305-01 11 126279292 126279292 C T ST3GAL4 Missense_Mutation p.R253W 0.19 deleterious(0.03) possibly_damaging(0.803) TCGA-CG-4305-01 11 1265996 1265996 C T MUC5B Missense_Mutation p.T2629M 0.09 unknown(0) TCGA-CG-4305-01 11 1275928 1275928 T C MUC5B Missense_Mutation p.L5161P 0.24 unknown(0) TCGA-CG-4305-01 11 128838937 128838937 G A ARHGAP32 Silent p.G2043G 0.12 TCGA-CG-4305-01 11 133402289 133402289 C T OPCML 5'UTR 0.20 TCGA-CG-4305-01 11 134244523 134244523 A C GLB1L2 Missense_Mutation p.N579H 0.18 deleterious(0) probably_damaging(0.994) TCGA-CG-4305-01 11 134252776 134252776 C T B3GAT1 Missense_Mutation p.R249Q 0.14 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 11 14284395 14284395 C T RP11-21L19.1 RNA 0.15 TCGA-CG-4305-01 11 14808053 14808053 T C PDE3B Missense_Mutation p.L367P 0.18 deleterious(0) probably_damaging(0.997) TCGA-CG-4305-01 11 1491656 1491656 C T MOB2 Missense_Mutation p.V185M 0.12 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 11 17741405 17741405 A G MYOD1 Missense_Mutation p.T26A 0.12 tolerated(1) benign(0.001) TCGA-CG-4305-01 11 26563573 26563573 G A ANO3 Missense_Mutation p.R371H 0.21 tolerated(0.25) possibly_damaging(0.726) TCGA-CG-4305-01 11 3115052 3115052 C - OSBPL5 Frame_Shift_Del p.G578Vfs*55 0.27 TCGA-CG-4305-01 11 31327168 31327168 T - DCDC1 Frame_Shift_Del p.I250Lfs*7 0.20 TCGA-CG-4305-01 11 44069845 44069845 G A ACCSL Missense_Mutation p.A87T 0.16 tolerated(0.91) benign(0) TCGA-CG-4305-01 11 44286624 44286624 G - ALX4 Frame_Shift_Del p.P339Lfs*12 0.23 TCGA-CG-4305-01 11 44331611 44331611 A G ALX4 Translation_Start_Site p.M1? 0.23 deleterious_low_confidence(0) possibly_damaging(0.599) TCGA-CG-4305-01 11 45832397 45832397 C T SLC35C1 Silent p.G202G 0.21 TCGA-CG-4305-01 11 4674677 4674677 A T OR51E1 Silent p.R307R 0.15 TCGA-CG-4305-01 11 4702872 4702872 C T OR51E2 3'UTR 0.15 TCGA-CG-4305-01 11 47660521 47660521 T C MTCH2 Missense_Mutation p.Y57C 0.14 deleterious(0.03) probably_damaging(0.956) TCGA-CG-4305-01 11 4967722 4967722 A - OR51A4 Frame_Shift_Del p.F203Lfs*8 0.10 TCGA-CG-4305-01 11 4976335 4976335 A - OR51A2 Frame_Shift_Del p.F203Lfs*8 0.13 TCGA-CG-4305-01 11 5364052 5364052 C G OR51B5 Missense_Mutation p.A235P 0.16 deleterious(0) probably_damaging(0.982) TCGA-CG-4305-01 11 55322161 55322161 T A OR4C15 Missense_Mutation p.S127T 0.20 tolerated_low_confidence(0.05) benign(0.056) TCGA-CG-4305-01 11 55606335 55606335 C A OR5D16 Silent p.V36V 0.18 TCGA-CG-4305-01 11 5565865 5565865 G T OR52H1 Missense_Mutation p.P297T 0.19 deleterious(0) probably_damaging(0.999) TCGA-CG-4305-01 11 56000059 56000059 A G OR5T2 Silent p.A201A 0.24 TCGA-CG-4305-01 11 5701403 5701403 G A TRIM5 Missense_Mutation p.A2V 0.29 deleterious(0) probably_damaging(0.959) TCGA-CG-4305-01 11 57156097 57156097 C T PRG2 Missense_Mutation p.A151T 0.20 tolerated(0.73) benign(0.002) TCGA-CG-4305-01 11 57569578 57569578 A T CTNND1 Nonsense_Mutation p.K444* 0.20 TCGA-CG-4305-01 11 58920618 58920618 C T FAM111A Nonsense_Mutation p.R493* 0.13 TCGA-CG-4305-01 11 62744860 62744860 C A SLC22A6 Splice_Site p.X454_splice 0.16 TCGA-CG-4305-01 11 63069976 63069976 G A SLC22A10 Missense_Mutation p.V416M 0.22 tolerated(0.26) benign(0.043) TCGA-CG-4305-01 11 63670254 63670254 G A MARK2 Silent p.T472T 0.11 TCGA-CG-4305-01 11 64055863 64055863 A G GPR137 Missense_Mutation p.I337V 0.19 tolerated(0.67) benign(0.245) TCGA-CG-4305-01 11 64888411 64888411 A - FAU Intron 0.20 TCGA-CG-4305-01 11 6622259 6622259 A G RRP8 Missense_Mutation p.F315S 0.08 deleterious(0) probably_damaging(0.998) TCGA-CG-4305-01 11 66262922 66262922 C T DPP3 Silent p.S513S 0.19 TCGA-CG-4305-01 11 67133087 67133087 G A CLCF1 Silent p.G66G 0.18 TCGA-CG-4305-01 11 67208745 67208745 C T CORO1B Intron 0.12 TCGA-CG-4305-01 11 68480770 68480770 C A MTL5 Missense_Mutation p.G376C 0.19 deleterious(0) probably_damaging(0.975) TCGA-CG-4305-01 11 70277339 70277339 G A CTTN Missense_Mutation p.A370T 0.15 tolerated(0.52) benign(0.002) TCGA-CG-4305-01 11 7063895 7063895 T - NLRP14 Frame_Shift_Del p.Y215Ifs*10 0.25 TCGA-CG-4305-01 11 7110454 7110454 G A RBMXL2 Missense_Mutation p.V35I 0.29 tolerated(0.49) possibly_damaging(0.564) TCGA-CG-4305-01 11 7111029 7111029 C T RBMXL2 Silent p.R226R 0.43 TCGA-CG-4305-01 11 71146556 71146556 G C DHCR7 Missense_Mutation p.F431L 0.20 deleterious(0.01) probably_damaging(0.99) TCGA-CG-4305-01 11 71238367 71238367 C T KRTAP5-7 Silent p.S7S 0.27 TCGA-CG-4305-01 11 71821194 71821194 C T ANAPC15 Missense_Mutation p.M86I 0.19 tolerated(0.31) benign(0.075) TCGA-CG-4305-01 11 71939414 71939414 G A INPPL1 Missense_Mutation p.R90H 0.24 deleterious(0.01) possibly_damaging(0.874) TCGA-CG-4305-01 11 72540492 72540492 G A ATG16L2 3'UTR 0.24 TCGA-CG-4305-01 11 73008445 73008445 C T P2RY6 Silent p.S294S 0.19 TCGA-CG-4305-01 11 76814096 76814096 G A OMP Missense_Mutation p.V71M 0.18 tolerated_low_confidence(0.24) benign(0.009) TCGA-CG-4305-01 11 77386206 77386206 C T RSF1 Missense_Mutation p.R1146H 0.28 deleterious(0.04) probably_damaging(0.998) TCGA-CG-4305-01 11 77389135 77389135 T C RSF1 Silent p.G1043G 0.20 TCGA-CG-4305-01 11 77672098 77672098 T - INTS4 Frame_Shift_Del p.D187Mfs*5 0.22 TCGA-CG-4305-01 11 78368952 78368952 A - TENM4 3'UTR 0.20 TCGA-CG-4305-01 11 82877337 82877337 A C PCF11 Missense_Mutation p.K466N 0.33 deleterious(0) possibly_damaging(0.893) TCGA-CG-4305-01 11 82924370 82924370 G A ANKRD42 Intron 0.28 TCGA-CG-4305-01 11 83874553 83874553 A G DLG2 Missense_Mutation p.V192A 0.14 deleterious(0.03) benign(0.429) TCGA-CG-4305-01 11 85468820 85468820 A G SYTL2 5'UTR 0.23 TCGA-CG-4305-01 11 86663160 86663160 C T FZD4 Missense_Mutation p.R213H 0.15 tolerated(0.06) benign(0.004) TCGA-CG-4305-01 11 89537602 89537602 T G TRIM49 Missense_Mutation p.E12D 0.18 tolerated(0.06) possibly_damaging(0.558) TCGA-CG-4305-01 11 92086520 92086520 T C FAT3 Silent p.G414G 0.18 TCGA-CG-4305-01 11 96086777 96086777 G T CCDC82 3'UTR 0.20 TCGA-CG-4305-01 12 100594775 100594775 A G ACTR6 Intron 0.33 TCGA-CG-4305-01 12 102572467 102572467 C A PARPBP Missense_Mutation p.P368H 0.14 deleterious(0) probably_damaging(0.995) TCGA-CG-4305-01 12 103696141 103696141 G A C12orf42 Silent p.G276G 0.13 TCGA-CG-4305-01 12 104476535 104476535 A - HCFC2 Frame_Shift_Del p.N309Ifs*32 0.41 TCGA-CG-4305-01 12 10462078 10462078 T A KLRD1 Missense_Mutation p.N33K 0.28 tolerated(0.08) benign(0.032) TCGA-CG-4305-01 12 104680996 104680996 T G TXNRD1 Intron 0.14 TCGA-CG-4305-01 12 10603715 10603715 G A KLRC1 Missense_Mutation p.P14L 0.14 deleterious(0.02) benign(0.206) TCGA-CG-4305-01 12 107937778 107937778 C - BTBD11 Frame_Shift_Del p.L453Cfs*53 0.29 TCGA-CG-4305-01 12 108169097 108169097 C - ASCL4 Frame_Shift_Del p.L37Sfs*53 0.24 TCGA-CG-4305-01 12 109935694 109935694 C A UBE3B Missense_Mutation p.A262D 0.15 deleterious(0) possibly_damaging(0.516) TCGA-CG-4305-01 12 110226265 110226265 G T TRPV4 Silent p.A716A 0.18 TCGA-CG-4305-01 12 112191598 112191598 G T ACAD10 Missense_Mutation p.G978V 0.08 deleterious(0) possibly_damaging(0.682) TCGA-CG-4305-01 12 112691953 112691953 G A HECTD4 Missense_Mutation p.A968V 0.19 benign(0.21) TCGA-CG-4305-01 12 113539773 113539773 C - RASAL1 Frame_Shift_Del p.D717Tfs*28 0.30 TCGA-CG-4305-01 12 1137182 1137182 C T ERC1 Missense_Mutation p.T38M 0.19 deleterious(0.04) probably_damaging(0.997) TCGA-CG-4305-01 12 114397939 114397939 G A RBM19 Silent p.A88A 0.29 TCGA-CG-4305-01 12 11992235 11992235 T G ETV6 Missense_Mutation p.S109A 0.27 tolerated(0.14) possibly_damaging(0.889) TCGA-CG-4305-01 12 121426811 121426811 C T HNF1A Missense_Mutation p.R168C 0.10 deleterious(0.01) probably_damaging(0.948) TCGA-CG-4305-01 12 122213651 122213651 G A TMEM120B 3'UTR 0.30 TCGA-CG-4305-01 12 12483888 12483888 A G MANSC1 Silent p.F123F 0.22 TCGA-CG-4305-01 12 125434766 125434766 C T DHX37 Missense_Mutation p.A1049T 0.14 tolerated(0.22) benign(0.062) TCGA-CG-4305-01 12 12630143 12630143 G A DUSP16 Missense_Mutation p.S541L 0.15 tolerated(0.14) possibly_damaging(0.512) TCGA-CG-4305-01 12 129283815 129283815 T C SLC15A4 Missense_Mutation p.H521R 0.15 tolerated(0.83) benign(0.206) TCGA-CG-4305-01 12 129559044 129559044 C A TMEM132D Silent p.V892V 0.21 TCGA-CG-4305-01 12 130184741 130184741 G A TMEM132D Silent p.A194A 0.20 TCGA-CG-4305-01 12 130647661 130647661 C G FZD10 Missense_Mutation p.H58Q 0.11 tolerated(0.12) benign(0.068) TCGA-CG-4305-01 12 133732657 133732657 C T ZNF10 Silent p.S275S 0.20 TCGA-CG-4305-01 12 19410381 19410381 A - PLEKHA5 Frame_Shift_Del p.V152Ffs*33 0.16 TCGA-CG-4305-01 12 21605065 21605065 C T PYROXD1 Silent p.N155N 0.27 TCGA-CG-4305-01 12 21926557 21926557 G A KCNJ8 5'UTR 0.17 TCGA-CG-4305-01 12 21954066 21954066 C T ABCC9 Missense_Mutation p.R1521Q 0.23 tolerated(0.24) benign(0.003) TCGA-CG-4305-01 12 29469773 29469773 G A FAR2 Splice_Site p.X319_splice 0.16 TCGA-CG-4305-01 12 29502024 29502024 T - ERGIC2 Frame_Shift_Del p.I239Lfs*3 0.19 TCGA-CG-4305-01 12 2983600 2983600 C T FOXM1 Silent p.R15R 0.23 TCGA-CG-4305-01 12 39733972 39733972 T - KIF21A Frame_Shift_Del p.T769Qfs*5 0.14 TCGA-CG-4305-01 12 40618874 40618874 G A LRRK2 5'Flank 0.22 TCGA-CG-4305-01 12 42860085 42860085 C A PRICKLE1 Missense_Mutation p.R229M 0.20 deleterious(0) probably_damaging(0.995) TCGA-CG-4305-01 12 45269328 45269328 A C NELL2 Intron 0.25 TCGA-CG-4305-01 12 46592455 46592455 C T SLC38A1 Missense_Mutation p.A359T 0.31 deleterious(0.02) probably_damaging(0.913) TCGA-CG-4305-01 12 49443676 49443676 G A KMT2D Missense_Mutation p.P1232L 0.18 probably_damaging(0.973) TCGA-CG-4305-01 12 49522457 49522457 G A TUBA1B Missense_Mutation p.R214C 0.14 tolerated_low_confidence(0.1) possibly_damaging(0.606) TCGA-CG-4305-01 12 49523374 49523374 T G TUBA1B Silent p.G45G 0.22 TCGA-CG-4305-01 12 49893963 49893963 C T SPATS2 Nonsense_Mutation p.Q272* 0.17 TCGA-CG-4305-01 12 5020676 5020676 C T KCNA1 Silent p.S44S 0.17 TCGA-CG-4305-01 12 5153669 5153669 A G KCNA5 Missense_Mutation p.H119R 0.21 tolerated(0.35) benign(0.115) TCGA-CG-4305-01 12 51693477 51693477 G A BIN2 Missense_Mutation p.R144W 0.23 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 12 52369163 52369163 G A ACVR1B Missense_Mutation p.C69Y 0.08 deleterious(0) probably_damaging(0.999) TCGA-CG-4305-01 12 52387827 52387827 G A ACVR1B Missense_Mutation p.R525H 0.06 deleterious(0) probably_damaging(0.999) TCGA-CG-4305-01 12 53428436 53428436 C T EIF4B Missense_Mutation p.R417W 0.12 tolerated(0.09) probably_damaging(0.982) TCGA-CG-4305-01 12 53454575 53454576 - G TENC1 Frame_Shift_Ins p.S974Kfs*4 0.16 TCGA-CG-4305-01 12 53819645 53819645 G - AMHR2 Frame_Shift_Del p.G267Vfs*25 0.24 TCGA-CG-4305-01 12 54635433 54635433 T - CBX5 3'UTR 0.25 TCGA-CG-4305-01 12 55846644 55846644 A G OR6C2 Missense_Mutation p.Y216C 0.21 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-CG-4305-01 12 56514990 56514991 - C ZC3H10 Frame_Shift_Ins p.D218* 0.22 TCGA-CG-4305-01 12 56711314 56711314 C T PAN2 3'UTR 0.30 TCGA-CG-4305-01 12 56827995 56827995 A G TIMELESS 5'UTR 0.20 TCGA-CG-4305-01 12 56867049 56867049 C T GLS2 Missense_Mutation p.R471Q 0.18 tolerated(0.08) benign(0.003) TCGA-CG-4305-01 12 56995394 56995394 G A BAZ2A Missense_Mutation p.P1338L 0.15 tolerated(0.08) probably_damaging(0.999) TCGA-CG-4305-01 12 57619197 57619197 A G NXPH4 Silent p.A198A 0.27 TCGA-CG-4305-01 12 6161823 6161823 G - VWF Frame_Shift_Del p.P691Qfs*50 0.27 TCGA-CG-4305-01 12 6161888 6161888 G A VWF Silent p.C669C 0.12 TCGA-CG-4305-01 12 64062022 64062022 G A DPY19L2 Missense_Mutation p.S51F 0.14 tolerated_low_confidence(0.07) benign(0.071) TCGA-CG-4305-01 12 6439831 6439831 A G TNFRSF1A Silent p.L224L 0.13 TCGA-CG-4305-01 12 66838485 66838485 G A GRIP1 Silent p.D470D 0.19 TCGA-CG-4305-01 12 69085873 69085873 G T NUP107 Missense_Mutation p.E143D 0.18 tolerated(0.11) probably_damaging(0.997) TCGA-CG-4305-01 12 69109462 69109462 A G NUP107 Missense_Mutation p.D342G 0.19 deleterious(0.01) probably_damaging(0.958) TCGA-CG-4305-01 12 69967824 69967824 C T FRS2 Missense_Mutation p.R206W 0.11 tolerated(0.18) benign(0.226) TCGA-CG-4305-01 12 7254322 7254322 G A C1RL Intron 0.27 TCGA-CG-4305-01 12 7288865 7288865 G A CLSTN3 Missense_Mutation p.R269H 0.18 tolerated(1) benign(0.001) TCGA-CG-4305-01 12 75687145 75687145 A G CAPS2 Silent p.G368G 0.19 TCGA-CG-4305-01 12 75900126 75900126 T C KRR1 Silent p.S191S 0.13 TCGA-CG-4305-01 12 78388636 78388636 A - NAV3 Frame_Shift_Del p.K244Sfs*26 0.10 TCGA-CG-4305-01 12 7966767 7966767 G - SLC2A14 3'UTR 0.32 TCGA-CG-4305-01 12 7967113 7967113 G A SLC2A14 Silent p.Y454Y 0.22 TCGA-CG-4305-01 12 81112676 81112677 - T MYF5 Frame_Shift_Ins p.C206Lfs*42 0.17 TCGA-CG-4305-01 12 85277607 85277607 G A SLC6A15 Intron 0.12 TCGA-CG-4305-01 12 85466854 85466854 T C LRRIQ1 Silent p.L955L 0.27 TCGA-CG-4305-01 12 88912617 88912617 C T KITLG Missense_Mutation p.V74I 0.26 deleterious(0) possibly_damaging(0.638) TCGA-CG-4305-01 12 9089811 9089812 - A PHC1 Frame_Shift_Ins p.M842Nfs*23 0.15 TCGA-CG-4305-01 12 9246106 9246106 C T A2M Missense_Mutation p.R732Q 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-CG-4305-01 12 9309872 9309872 A G PZP Missense_Mutation p.V1150A 0.18 deleterious(0.01) benign(0.089) TCGA-CG-4305-01 13 101759837 101759837 C T NALCN Splice_Site p.X860_splice 0.20 TCGA-CG-4305-01 13 101833537 101833537 T C NALCN Intron 0.22 TCGA-CG-4305-01 13 103449310 103449310 G T KDELC1 Missense_Mutation p.P78T 0.13 tolerated(0.14) benign(0.016) TCGA-CG-4305-01 13 109779715 109779715 G A MYO16 Missense_Mutation p.V1268I 0.20 tolerated(0.08) benign(0) TCGA-CG-4305-01 13 109792726 109792726 C T MYO16 Missense_Mutation p.S1367L 0.17 tolerated(0.25) benign(0.035) TCGA-CG-4305-01 13 115089602 115089602 A - CHAMP1 Frame_Shift_Del p.N97Ifs*3 0.13 TCGA-CG-4305-01 13 25030523 25030523 G A PARP4 Missense_Mutation p.L840F 0.16 deleterious(0.01) benign(0.15) TCGA-CG-4305-01 13 25376644 25376644 G A RNF17 Silent p.P628P 0.11 TCGA-CG-4305-01 13 28841270 28841270 G A PAN3 Missense_Mutation p.D538N 0.17 tolerated(0.07) probably_damaging(0.996) TCGA-CG-4305-01 13 29001439 29001439 G A FLT1 Silent p.Y431Y 0.14 TCGA-CG-4305-01 13 29286870 29286870 A C SLC46A3 Missense_Mutation p.M336R 0.18 deleterious(0.01) benign(0.261) TCGA-CG-4305-01 13 30341767 30341767 G C UBL3 Missense_Mutation p.P97A 0.15 tolerated(0.15) probably_damaging(0.96) TCGA-CG-4305-01 13 31211891 31211892 - A USPL1 Frame_Shift_Ins p.L296Tfs*15 0.18 TCGA-CG-4305-01 13 31506851 31506851 G A TEX26 5'UTR 0.13 TCGA-CG-4305-01 13 32753081 32753081 C T FRY Missense_Mutation p.P928S 0.22 tolerated(0.3) benign(0.041) TCGA-CG-4305-01 13 32821607 32821607 A G FRY Missense_Mutation p.K2326E 0.13 deleterious(0) probably_damaging(0.992) TCGA-CG-4305-01 13 32850638 32850638 G A FRY Missense_Mutation p.S2775N 0.20 tolerated(0.21) probably_damaging(0.961) TCGA-CG-4305-01 13 32929044 32929044 C T BRCA2 Missense_Mutation p.P2352S 0.15 deleterious(0.03) possibly_damaging(0.615) TCGA-CG-4305-01 13 36909272 36909272 A - SPG20 Frame_Shift_Del p.F232Lfs*2 0.14 TCGA-CG-4305-01 13 39424294 39424294 C T FREM2 Missense_Mutation p.R2167W 0.22 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 13 41323298 41323298 C A MRPS31 Nonsense_Mutation p.E312* 0.16 TCGA-CG-4305-01 13 42273343 42273343 A G VWA8 Missense_Mutation p.M1143T 0.14 tolerated(0.8) benign(0.001) TCGA-CG-4305-01 13 43543269 43543269 T A EPSTI1 Missense_Mutation p.N98Y 0.10 deleterious(0.01) possibly_damaging(0.704) TCGA-CG-4305-01 13 43900600 43900600 C T ENOX1 Silent p.S366S 0.14 TCGA-CG-4305-01 13 46425655 46425655 A G SIAH3 Missense_Mutation p.V37A 0.17 tolerated_low_confidence(0.07) benign(0.005) TCGA-CG-4305-01 13 46937325 46937325 G A KIAA0226L Missense_Mutation p.P284S 0.10 tolerated(0.35) benign(0.35) TCGA-CG-4305-01 13 46946110 46946110 A - KIAA0226L Frame_Shift_Del p.F167Lfs*6 0.14 TCGA-CG-4305-01 13 47315978 47315978 G A LRCH1 Missense_Mutation p.A763T 0.16 deleterious_low_confidence(0.03) benign(0.062) TCGA-CG-4305-01 13 47409098 47409099 - T HTR2A Frame_Shift_Ins p.N431Efs*11 0.11 TCGA-CG-4305-01 13 50065970 50065970 A - SETDB2 Frame_Shift_Del p.I718Yfs*11 0.12 TCGA-CG-4305-01 13 50489185 50489185 A - SPRYD7 3'UTR 0.11 TCGA-CG-4305-01 13 52532477 52532477 G A ATP7B Silent p.A775A 0.14 TCGA-CG-4305-01 13 52971858 52971858 T C THSD1 Missense_Mutation p.E177G 0.25 tolerated(0.06) benign(0.016) TCGA-CG-4305-01 13 52989994 52989994 A - VPS36 Frame_Shift_Del p.Y378Tfs*6 0.13 TCGA-CG-4305-01 13 58206890 58206890 C A PCDH17 Silent p.S70S 0.27 TCGA-CG-4305-01 13 58208123 58208123 G A PCDH17 Silent p.V481V 0.15 TCGA-CG-4305-01 13 60565331 60565331 A C DIAPH3 Missense_Mutation p.L441R 0.09 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 13 72134083 72134083 C T DACH1 Missense_Mutation p.R437H 0.21 probably_damaging(0.988) TCGA-CG-4305-01 13 76378450 76378450 A G LMO7 5'UTR 0.17 TCGA-CG-4305-01 13 84454827 84454827 C T SLITRK1 Silent p.P272P 0.15 TCGA-CG-4305-01 13 88327712 88327712 G A SLITRK5 Silent p.L23L 0.17 TCGA-CG-4305-01 13 88329582 88329582 G - SLITRK5 Frame_Shift_Del p.A648Pfs*19 0.20 TCGA-CG-4305-01 13 95244550 95244550 G A TGDS Missense_Mutation p.A56V 0.16 deleterious(0) probably_damaging(0.965) TCGA-CG-4305-01 13 95735432 95735432 A - ABCC4 Frame_Shift_Del p.L883Wfs*7 0.15 TCGA-CG-4305-01 13 96086251 96086251 C T CLDN10 Missense_Mutation p.A55V 0.21 deleterious(0) possibly_damaging(0.819) TCGA-CG-4305-01 13 96205116 96205116 G A CLDN10 Missense_Mutation p.G37S 0.12 tolerated(0.58) benign(0.037) TCGA-CG-4305-01 13 98829457 98829457 C T RNF113B Missense_Mutation p.D12N 0.10 tolerated(0.14) benign(0.07) TCGA-CG-4305-01 13 99109475 99109475 C T STK24 Silent p.A414A 0.14 TCGA-CG-4305-01 14 102568317 102568317 G A HSP90AA1 Silent p.H87H 0.21 TCGA-CG-4305-01 14 103390157 103390157 G A AMN Silent p.P51P 0.16 TCGA-CG-4305-01 14 103958244 103958244 C T MARK3 Nonsense_Mutation p.R573* 0.21 TCGA-CG-4305-01 14 105995256 105995256 C A TMEM121 Missense_Mutation p.L29M 0.38 deleterious(0) probably_damaging(0.997) TCGA-CG-4305-01 14 20403904 20403904 T - OR4K1 Frame_Shift_Del p.F28Lfs*6 0.13 TCGA-CG-4305-01 14 21250106 21250106 T G RNASE6 Missense_Mutation p.I83S 0.23 deleterious(0.03) benign(0.428) TCGA-CG-4305-01 14 21559656 21559656 C T ZNF219 Missense_Mutation p.R493Q 0.20 deleterious(0.02) probably_damaging(0.945) TCGA-CG-4305-01 14 21860061 21860061 C T CHD8 Silent p.A2272A 0.14 TCGA-CG-4305-01 14 22134239 22134239 T C OR4E2 3'Flank 0.28 TCGA-CG-4305-01 14 23517514 23517514 G - CDH24 Frame_Shift_Del p.P712Rfs*129 0.27 TCGA-CG-4305-01 14 23947259 23947259 T - NGDN 3'UTR 0.15 TCGA-CG-4305-01 14 24620009 24620009 C - RNF31 Frame_Shift_Del p.L469Cfs*23 0.24 TCGA-CG-4305-01 14 24737768 24737768 C T RABGGTA Missense_Mutation p.V320I 0.22 tolerated(0.16) benign(0.005) TCGA-CG-4305-01 14 24784882 24784882 C - LTB4R Frame_Shift_Del p.S11Hfs*2 0.22 TCGA-CG-4305-01 14 32562687 32562687 G T ARHGAP5 Missense_Mutation p.V938F 0.20 deleterious(0) probably_damaging(0.993) TCGA-CG-4305-01 14 35222777 35222777 G A BAZ1A Silent p.H1536H 0.16 TCGA-CG-4305-01 14 39716693 39716693 A G MIA2 Silent p.Q305Q 0.20 TCGA-CG-4305-01 14 47530771 47530771 T - MDGA2 Frame_Shift_Del p.G403Dfs*22 0.25 TCGA-CG-4305-01 14 50121545 50121545 T - POLE2 Frame_Shift_Del p.T344Lfs*5 0.18 TCGA-CG-4305-01 14 50585066 50585067 - G SOS2 Frame_Shift_Ins p.Q1332Pfs*10 0.28 TCGA-CG-4305-01 14 50824783 50824783 C A CDKL1 Intron 0.17 TCGA-CG-4305-01 14 52734770 52734770 A G PTGDR Missense_Mutation p.S80G 0.13 deleterious(0) probably_damaging(0.992) TCGA-CG-4305-01 14 53386022 53386022 A G FERMT2 Silent p.T70T 0.18 TCGA-CG-4305-01 14 54996827 54996827 G T CGRRF1 Missense_Mutation p.C102F 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-CG-4305-01 14 55510009 55510009 C T SOCS4 Missense_Mutation p.H84Y 0.18 deleterious(0.04) possibly_damaging(0.811) TCGA-CG-4305-01 14 58796867 58796867 A - ARID4A Frame_Shift_Del p.K297Rfs*81 0.19 TCGA-CG-4305-01 14 59930738 59930738 C T GPR135 Missense_Mutation p.E403K 0.31 tolerated(0.07) possibly_damaging(0.797) TCGA-CG-4305-01 14 59930945 59930945 G T GPR135 Missense_Mutation p.L334I 0.18 deleterious(0.01) probably_damaging(0.942) TCGA-CG-4305-01 14 60582161 60582161 C T PCNXL4 Missense_Mutation p.R213W 0.21 tolerated(0.08) benign(0.052) TCGA-CG-4305-01 14 63269270 63269270 T C KCNH5 Silent p.R533R 0.14 TCGA-CG-4305-01 14 64681174 64681174 A G SYNE2 Missense_Mutation p.Y6440C 0.16 probably_damaging(1) TCGA-CG-4305-01 14 64701681 64701681 C T ESR2 Intron 0.09 TCGA-CG-4305-01 14 64724058 64724058 T C ESR2 Missense_Mutation p.D326G 0.14 deleterious(0.01) probably_damaging(0.986) TCGA-CG-4305-01 14 65234410 65234410 G A SPTB Missense_Mutation p.R2064C 0.13 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 14 70634344 70634344 G A SLC8A3 Missense_Mutation p.R266C 0.15 deleterious(0) probably_damaging(0.973) TCGA-CG-4305-01 14 73964917 73964917 G A HEATR4 Missense_Mutation p.R830W 0.13 deleterious(0) possibly_damaging(0.614) TCGA-CG-4305-01 14 74757130 74757130 G - ABCD4 Frame_Shift_Del p.S398Pfs*6 0.17 TCGA-CG-4305-01 14 75537377 75537381 CTTAC TAT ZC2HC1C Frame_Shift_Del p.S34Lfs*2 0.22 TCGA-CG-4305-01 14 76012887 76012887 C T BATF Missense_Mutation p.S84L 0.19 tolerated(0.12) possibly_damaging(0.641) TCGA-CG-4305-01 14 77229171 77229171 G - VASH1 Frame_Shift_Del p.K5Rfs*146 0.41 TCGA-CG-4305-01 14 80668750 80668750 C T DIO2 3'Flank 0.19 TCGA-CG-4305-01 14 81744923 81744923 T C STON2 Silent p.L244L 0.13 TCGA-CG-4305-01 14 91691032 91691032 A - C14orf159 Frame_Shift_Del p.M576Cfs*34 0.24 TCGA-CG-4305-01 14 92548751 92548751 T C ATXN3 Missense_Mutation p.D223G 0.20 tolerated(0.07) benign(0.007) TCGA-CG-4305-01 14 94528520 94528520 A C DDX24 Missense_Mutation p.L389R 0.22 deleterious(0) probably_damaging(0.995) TCGA-CG-4305-01 14 94912669 94912669 T C SERPINA11 Missense_Mutation p.S306G 0.18 tolerated(0.53) probably_damaging(0.916) TCGA-CG-4305-01 15 101562123 101562123 C A LRRK1 Missense_Mutation p.L605M 0.27 deleterious(0) possibly_damaging(0.759) TCGA-CG-4305-01 15 101593607 101593607 C T LRRK1 Silent p.L1346L 0.24 TCGA-CG-4305-01 15 23931631 23931631 A G NDN Missense_Mutation p.L245P 0.16 deleterious(0) probably_damaging(0.991) TCGA-CG-4305-01 15 25324236 25324236 T C SNORD116-13 RNA 0.18 TCGA-CG-4305-01 15 27778127 27778127 C T GABRG3 3'UTR 0.24 TCGA-CG-4305-01 15 28443796 28443796 C T HERC2 Silent p.Q2612Q 0.17 TCGA-CG-4305-01 15 31197145 31197145 C A FAN1 Silent p.T93T 0.19 TCGA-CG-4305-01 15 34130387 34130387 T C RYR3 Missense_Mutation p.I4069T 0.24 probably_damaging(0.971) TCGA-CG-4305-01 15 35167043 35167043 C T AQR Missense_Mutation p.R1087Q 0.12 deleterious(0) possibly_damaging(0.903) TCGA-CG-4305-01 15 41865886 41865886 G A TYRO3 Missense_Mutation p.G719R 0.19 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 15 41870287 41870287 G A TYRO3 Missense_Mutation p.S829N 0.11 tolerated(0.5) benign(0.001) TCGA-CG-4305-01 15 42133713 42133713 A C PLA2G4B Splice_Site p.X377_splice 0.18 TCGA-CG-4305-01 15 42178429 42178429 G A SPTBN5 Missense_Mutation p.R342W 0.14 probably_damaging(0.981) TCGA-CG-4305-01 15 42749224 42749224 C A ZNF106 Missense_Mutation p.E60D 0.17 tolerated(0.1) benign(0.257) TCGA-CG-4305-01 15 43023871 43023871 G - CDAN1 Frame_Shift_Del p.T563Pfs*29 0.21 TCGA-CG-4305-01 15 43701201 43701202 AC - TP53BP1 Frame_Shift_Del p.H1833Cfs*5 0.24 TCGA-CG-4305-01 15 48428959 48428959 A G SLC24A5 Missense_Mutation p.I224V 0.26 tolerated(0.69) benign(0.001) TCGA-CG-4305-01 15 48634180 48634180 A - DUT Intron 0.22 TCGA-CG-4305-01 15 49044577 49044577 G T CEP152 Silent p.P1145P 0.16 TCGA-CG-4305-01 15 49048345 49048345 G A CEP152 Missense_Mutation p.R1034W 0.26 deleterious(0) probably_damaging(0.993) TCGA-CG-4305-01 15 49048347 49048347 T C CEP152 Missense_Mutation p.K1033R 0.04 tolerated(0.69) benign(0.006) TCGA-CG-4305-01 15 50193368 50193368 T - ATP8B4 Frame_Shift_Del p.K737Sfs*10 0.18 TCGA-CG-4305-01 15 51504611 51504611 T C CYP19A1 Missense_Mutation p.K390R 0.21 tolerated(0.13) benign(0.072) TCGA-CG-4305-01 15 51829690 51829690 C G DMXL2 Missense_Mutation p.V538L 0.23 deleterious(0.03) probably_damaging(0.997) TCGA-CG-4305-01 15 62244049 62244050 - T VPS13C Frame_Shift_Ins p.I1477Nfs*2 0.23 TCGA-CG-4305-01 15 64424090 64424090 G A SNX1 Missense_Mutation p.R407H 0.19 deleterious(0) probably_damaging(0.961) TCGA-CG-4305-01 15 64689965 64689965 G A TRIP4 Missense_Mutation p.R189H 0.20 deleterious(0) possibly_damaging(0.537) TCGA-CG-4305-01 15 65623874 65623874 G A IGDCC3 Silent p.P424P 0.20 TCGA-CG-4305-01 15 67073679 67073679 G A SMAD6 Missense_Mutation p.G433S 0.30 deleterious(0) probably_damaging(0.992) TCGA-CG-4305-01 15 69331226 69331226 T - NOX5 Frame_Shift_Del p.H470Tfs*10 0.19 TCGA-CG-4305-01 15 72338102 72338102 A G MYO9A Missense_Mutation p.V268A 0.12 deleterious(0) probably_damaging(0.987) TCGA-CG-4305-01 15 75105194 75105194 C T LMAN1L 5'UTR 0.25 TCGA-CG-4305-01 15 75146364 75146364 G - SCAMP2 Frame_Shift_Del p.Q75Rfs*36 0.19 TCGA-CG-4305-01 15 75705355 75705355 A G SIN3A Missense_Mutation p.S169P 0.20 deleterious(0) probably_damaging(0.995) TCGA-CG-4305-01 15 75942332 75942332 C T SNX33 Missense_Mutation p.R297C 0.19 deleterious(0) probably_damaging(0.998) TCGA-CG-4305-01 15 75979930 75979930 C T CSPG4 Missense_Mutation p.R1159H 0.21 deleterious(0) probably_damaging(0.999) TCGA-CG-4305-01 15 75981580 75981580 G T CSPG4 Missense_Mutation p.P609H 0.23 deleterious(0) probably_damaging(0.992) TCGA-CG-4305-01 15 79277314 79277314 C A RASGRF1 Intron 0.12 TCGA-CG-4305-01 15 86940602 86940602 C T AGBL1 Missense_Mutation p.R748C 0.18 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 15 94910905 94910906 - G MCTP2 Frame_Shift_Ins p.A460Gfs*18 0.22 TCGA-CG-4305-01 16 10031878 10031878 C A GRIN2A Missense_Mutation p.E315D 0.31 tolerated(0.2) benign(0.002) TCGA-CG-4305-01 16 12798726 12798726 C - CPPED1 Frame_Shift_Del p.G157Afs*21 0.24 TCGA-CG-4305-01 16 14041518 14041518 C T ERCC4 Missense_Mutation p.R689C 0.16 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 16 15026700 15026700 G A NPIPA1 5'Flank 0.11 TCGA-CG-4305-01 16 15820795 15820797 CTT - MYH11 In_Frame_Del p.K1263del 0.21 TCGA-CG-4305-01 16 1817604 1817604 C T MAPK8IP3 Missense_Mutation p.R1092W 0.15 deleterious(0) probably_damaging(0.986) TCGA-CG-4305-01 16 18858865 18858865 A C SMG1 Missense_Mutation p.V1969G 0.18 deleterious(0.01) probably_damaging(0.958) TCGA-CG-4305-01 16 18875096 18875096 A G SMG1 Missense_Mutation p.C1191R 0.24 deleterious(0.03) probably_damaging(0.962) TCGA-CG-4305-01 16 19083251 19083251 T G COQ7 Silent p.A25A 0.24 TCGA-CG-4305-01 16 19474618 19474619 - A TMC5 Frame_Shift_Ins p.S391Kfs*109 0.17 TCGA-CG-4305-01 16 19485561 19485561 G A TMC5 Missense_Mutation p.E685K 0.16 tolerated(0.07) benign(0.18) TCGA-CG-4305-01 16 21814036 21814036 C T RRN3P1 RNA 0.11 TCGA-CG-4305-01 16 22268599 22268599 G A EEF2K Missense_Mutation p.R265H 0.24 deleterious(0.01) benign(0.159) TCGA-CG-4305-01 16 22291646 22291646 G A EEF2K Missense_Mutation p.E673K 0.14 deleterious(0.03) benign(0.139) TCGA-CG-4305-01 16 2489817 2489817 G T CCNF Missense_Mutation p.W256L 0.27 tolerated(0.33) benign(0.154) TCGA-CG-4305-01 16 2764172 2764172 C T PRSS27 Silent p.V134V 0.20 TCGA-CG-4305-01 16 28488922 28488922 G A CLN3 Missense_Mutation p.A411V 0.24 tolerated(0.95) benign(0.151) TCGA-CG-4305-01 16 30999155 30999155 G A HSD3B7 Missense_Mutation p.G254D 0.21 deleterious(0.03) probably_damaging(0.967) TCGA-CG-4305-01 16 31075373 31075373 G A ZNF668 Silent p.G159G 0.20 TCGA-CG-4305-01 16 31151942 31151942 G - PRSS36 Frame_Shift_Del p.L680Wfs*6 0.24 TCGA-CG-4305-01 16 31196420 31196420 C T FUS Silent p.G228G 0.35 TCGA-CG-4305-01 16 3139475 3139475 G A ZSCAN10 Missense_Mutation p.R599C 0.17 deleterious(0) probably_damaging(0.999) TCGA-CG-4305-01 16 32266274 32266274 C T TP53TG3D 3'UTR 0.25 TCGA-CG-4305-01 16 3306386 3306386 G A MEFV Nonsense_Mutation p.Q68* 0.21 TCGA-CG-4305-01 16 336905 336905 C A PDIA2 Missense_Mutation p.P498H 0.30 deleterious(0) probably_damaging(0.993) TCGA-CG-4305-01 16 3614549 3614549 G T NLRC3 Missense_Mutation p.P177H 0.22 deleterious(0) probably_damaging(0.95) TCGA-CG-4305-01 16 4924298 4924300 AGG - UBN1 In_Frame_Del p.G631del 0.22 TCGA-CG-4305-01 16 50112651 50112651 G C HEATR3 Splice_Site p.X255_splice 0.19 TCGA-CG-4305-01 16 5094401 5094401 G - C16orf89 3'UTR 0.29 TCGA-CG-4305-01 16 53675003 53675003 C T RPGRIP1L Missense_Mutation p.R967H 0.15 tolerated(0.13) benign(0.052) TCGA-CG-4305-01 16 57760089 57760089 G A CCDC135 Missense_Mutation p.R623H 0.20 deleterious(0.02) possibly_damaging(0.888) TCGA-CG-4305-01 16 57931726 57931726 T G CNGB1 Missense_Mutation p.K1023N 0.24 deleterious(0) possibly_damaging(0.542) TCGA-CG-4305-01 16 58147858 58147858 G A C16orf80 3'UTR 0.24 TCGA-CG-4305-01 16 58314157 58314157 C T PRSS54 Missense_Mutation p.V387M 0.13 tolerated(0.14) benign(0.005) TCGA-CG-4305-01 16 61747823 61747823 T G CDH8 Missense_Mutation p.K526Q 0.21 tolerated(0.66) benign(0.022) TCGA-CG-4305-01 16 66551046 66551046 A G TK2 Missense_Mutation p.I204T 0.17 deleterious(0) probably_damaging(0.996) TCGA-CG-4305-01 16 66612846 66612846 C T CMTM1 Missense_Mutation p.S268F 0.15 deleterious(0.01) possibly_damaging(0.805) TCGA-CG-4305-01 16 67270917 67270917 C T FHOD1 Missense_Mutation p.R365H 0.30 tolerated(0.06) probably_damaging(0.994) TCGA-CG-4305-01 16 67576836 67576836 A G FAM65A Missense_Mutation p.Q736R 0.14 tolerated(0.14) benign(0.069) TCGA-CG-4305-01 16 67862087 67862087 G - CENPT 3'UTR 0.31 TCGA-CG-4305-01 16 68349833 68349833 A G PRMT7 5'UTR 0.19 TCGA-CG-4305-01 16 68406042 68406042 C T SMPD3 Missense_Mutation p.A15T 0.33 tolerated(0.46) benign(0.107) TCGA-CG-4305-01 16 68597623 68597623 G A ZFP90 Silent p.Q311Q 0.22 TCGA-CG-4305-01 16 68598358 68598358 T C ZFP90 Silent p.I556I 0.19 TCGA-CG-4305-01 16 68961816 68961818 ACT - TANGO6 In_Frame_Del p.T827del 0.25 TCGA-CG-4305-01 16 70030010 70030010 C T PDXDC2P RNA 0.23 TCGA-CG-4305-01 16 70166194 70166194 G A PDPR Missense_Mutation p.D330N 0.11 tolerated(0.11) probably_damaging(1) TCGA-CG-4305-01 16 70993674 70993674 C A HYDIN Missense_Mutation p.E2006D 0.12 probably_damaging(0.953) TCGA-CG-4305-01 16 81242146 81242146 A G PKD1L2 Missense_Mutation p.L237P 0.19 deleterious(0.05) benign(0.117) TCGA-CG-4305-01 16 824999 824999 A G MSLNL Missense_Mutation p.S525P 0.09 possibly_damaging(0.843) TCGA-CG-4305-01 16 88871856 88871856 A C CDT1 Missense_Mutation p.K166T 0.16 deleterious(0) benign(0.334) TCGA-CG-4305-01 16 89345552 89345552 G A ANKRD11 Silent p.Y2466Y 0.28 TCGA-CG-4305-01 16 89592862 89592862 A G SPG7 Silent p.T248T 0.24 TCGA-CG-4305-01 16 89920972 89920972 C - SPIRE2 Frame_Shift_Del p.L270Sfs*13 0.22 TCGA-CG-4305-01 16 8995029 8995029 G A USP7 Missense_Mutation p.H704Y 0.12 tolerated(0.11) possibly_damaging(0.658) TCGA-CG-4305-01 16 90032407 90032407 G A DEF8 3'UTR 0.50 TCGA-CG-4305-01 17 10315825 10315825 C T MYH8 Silent p.A426A 0.16 TCGA-CG-4305-01 17 11757384 11757384 C T DNAH9 Missense_Mutation p.A3191V 0.18 possibly_damaging(0.788) TCGA-CG-4305-01 17 1371157 1371157 G A MYO1C Nonsense_Mutation p.Q982* 0.17 TCGA-CG-4305-01 17 17117130 17117130 G A FLCN Nonsense_Mutation p.R527* 0.18 TCGA-CG-4305-01 17 17720700 17720700 C T SREBF1 Silent p.T522T 0.55 TCGA-CG-4305-01 17 17766052 17766052 G A TOM1L2 Missense_Mutation p.R399C 0.20 deleterious(0) possibly_damaging(0.776) TCGA-CG-4305-01 17 18023410 18023410 C T MYO15A Silent p.I432I 0.14 TCGA-CG-4305-01 17 18039027 18039027 G A MYO15A Silent p.T1495T 0.08 TCGA-CG-4305-01 17 18140176 18140176 G A LLGL1 Missense_Mutation p.D512N 0.24 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 17 18781016 18781016 T C PRPSAP2 Missense_Mutation p.V82A 0.17 deleterious(0.02) possibly_damaging(0.461) TCGA-CG-4305-01 17 21215543 21215543 G A MAP2K3 Silent p.Q288Q 0.16 TCGA-CG-4305-01 17 26116642 26116642 C T NOS2 Silent p.V61V 0.15 TCGA-CG-4305-01 17 27580761 27580761 T C CRYBA1 Missense_Mutation p.F154S 0.14 tolerated(0.6) benign(0.127) TCGA-CG-4305-01 17 27936411 27936411 C T ANKRD13B Missense_Mutation p.T265M 0.13 tolerated(0.35) benign(0.22) TCGA-CG-4305-01 17 29161234 29161234 A G ATAD5 Silent p.P45P 0.18 TCGA-CG-4305-01 17 29196630 29196630 T - ATAD5 Frame_Shift_Del p.F1193Lfs*6 0.20 TCGA-CG-4305-01 17 29196636 29196636 T A ATAD5 Missense_Mutation p.F1193L 0.21 deleterious(0.02) probably_damaging(1) TCGA-CG-4305-01 17 29281495 29281495 G A ADAP2 Splice_Site p.X269_splice 0.20 TCGA-CG-4305-01 17 30500897 30500898 AG - RHOT1 Frame_Shift_Del p.R50Sfs*15 0.19 TCGA-CG-4305-01 17 30796051 30796051 C T PSMD11 Silent p.D161D 0.23 TCGA-CG-4305-01 17 32597332 32597332 T G CCL7 Missense_Mutation p.L8R 0.23 deleterious(0) benign(0.164) TCGA-CG-4305-01 17 33316509 33316509 C - LIG3 Frame_Shift_Del p.S241Rfs*65 0.22 TCGA-CG-4305-01 17 33749721 33749721 T C SLFN12 Silent p.S109S 0.18 TCGA-CG-4305-01 17 33849692 33849692 A G SLFN12L 5'UTR 0.14 TCGA-CG-4305-01 17 34106027 34106027 T C MMP28 Missense_Mutation p.T82A 0.19 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 17 34192249 34192249 T A C17orf66 Missense_Mutation p.K97M 0.16 deleterious(0) probably_damaging(0.935) TCGA-CG-4305-01 17 34856703 34856703 G A MYO19 Missense_Mutation p.R782W 0.12 deleterious(0.01) possibly_damaging(0.8) TCGA-CG-4305-01 17 34913105 34913105 G T GGNBP2 Missense_Mutation p.K119N 0.19 tolerated(0.56) benign(0.001) TCGA-CG-4305-01 17 35825685 35825685 A G TADA2A Intron 0.16 TCGA-CG-4305-01 17 37188147 37188147 C A CTD-2206N4.2 5'Flank 0.19 TCGA-CG-4305-01 17 3786411 3786411 C T CAMKK1 Silent p.L191L 0.20 TCGA-CG-4305-01 17 38510653 38510653 G A RARA Missense_Mutation p.G303S 0.24 deleterious(0.02) probably_damaging(1) TCGA-CG-4305-01 17 38562931 38562931 T - TOP2A Frame_Shift_Del p.N583Tfs*49 0.17 TCGA-CG-4305-01 17 38818172 38818172 G A KRT222 Missense_Mutation p.A74V 0.04 deleterious(0) probably_damaging(0.978) TCGA-CG-4305-01 17 39253833 39253833 G T KRTAP4-8 Silent p.A168A 0.30 TCGA-CG-4305-01 17 3936194 3936194 G T ZZEF1 Nonsense_Mutation p.C2229* 0.17 TCGA-CG-4305-01 17 39674981 39674981 C - KRT15 Frame_Shift_Del p.S34Vfs*31 0.33 TCGA-CG-4305-01 17 3974039 3974039 G A ZZEF1 Silent p.N1338N 0.16 TCGA-CG-4305-01 17 39780376 39780376 C T KRT17 Missense_Mutation p.R129H 0.24 tolerated(0.14) benign(0.009) TCGA-CG-4305-01 17 40825491 40825491 C - PLEKHH3 Frame_Shift_Del p.V192Wfs*6 0.24 TCGA-CG-4305-01 17 42162480 42162480 G A HDAC5 Silent p.C699C 0.18 TCGA-CG-4305-01 17 42426635 42426635 G A GRN Missense_Mutation p.G35R 0.19 deleterious(0.03) benign(0.127) TCGA-CG-4305-01 17 42854609 42854609 C A ADAM11 Missense_Mutation p.S586Y 0.17 deleterious(0) possibly_damaging(0.579) TCGA-CG-4305-01 17 43522885 43522885 C - PLEKHM1 Frame_Shift_Del p.D930Ifs*11 0.23 TCGA-CG-4305-01 17 44249126 44249126 C T KANSL1 Silent p.Q128Q 0.20 TCGA-CG-4305-01 17 45567619 45567619 C T MRPL45P2 RNA 0.23 TCGA-CG-4305-01 17 45886342 45886343 - G OSBPL7 Frame_Shift_Ins p.D729Rfs*3 0.26 TCGA-CG-4305-01 17 4856098 4856098 C T ENO3 Nonsense_Mutation p.R32* 0.16 TCGA-CG-4305-01 17 5392616 5392616 A - MIS12 Frame_Shift_Del p.I147Lfs*10 0.22 TCGA-CG-4305-01 17 58132907 58132907 G A HEATR6 Missense_Mutation p.A753V 0.17 tolerated(1) benign(0) TCGA-CG-4305-01 17 60814818 60814818 G A MARCH10 Intron 0.12 TCGA-CG-4305-01 17 61902414 61902416 CTT - FTSJ3 In_Frame_Del p.K235del 0.19 TCGA-CG-4305-01 17 63532585 63532585 C - AXIN2 Frame_Shift_Del p.G665Afs*24 0.24 TCGA-CG-4305-01 17 6606329 6606329 C G SLC13A5 Missense_Mutation p.G226R 0.19 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 17 66246991 66246991 T G AMZ2 Missense_Mutation p.Y114D 0.28 tolerated(0.74) possibly_damaging(0.813) TCGA-CG-4305-01 17 70120097 70120097 C A SOX9 Missense_Mutation p.P367T 0.26 tolerated(0.31) benign(0.004) TCGA-CG-4305-01 17 70645098 70645098 T C SLC39A11 Missense_Mutation p.Y265C 0.12 deleterious(0) possibly_damaging(0.721) TCGA-CG-4305-01 17 71238436 71238436 G A C17orf80 Missense_Mutation p.G523R 0.27 tolerated(1) benign(0.032) TCGA-CG-4305-01 17 72846719 72846719 C T GRIN2C Missense_Mutation p.R434H 0.16 deleterious(0.01) benign(0.375) TCGA-CG-4305-01 17 72956269 72956269 T C HID1 Missense_Mutation p.Y268C 0.21 deleterious(0) probably_damaging(0.999) TCGA-CG-4305-01 17 73231232 73231232 G A NUP85 Missense_Mutation p.R602Q 0.20 tolerated(0.6) benign(0.016) TCGA-CG-4305-01 17 73263620 73263620 T A MIF4GD Missense_Mutation p.E188V 0.11 deleterious(0.01) probably_damaging(0.985) TCGA-CG-4305-01 17 73560538 73560538 C A LLGL2 Missense_Mutation p.T329N 0.15 deleterious(0) probably_damaging(0.956) TCGA-CG-4305-01 17 73917331 73917331 G A FBF1 Silent p.P541P 0.31 TCGA-CG-4305-01 17 7751626 7751626 C - KDM6B Frame_Shift_Del p.T676Lfs*24 0.24 TCGA-CG-4305-01 17 7752943 7752943 G A KDM6B Missense_Mutation p.G1113S 0.17 possibly_damaging(0.878) TCGA-CG-4305-01 17 77923563 77923563 C T TBC1D16 Silent p.A453A 0.25 TCGA-CG-4305-01 17 78091485 78091485 G A GAA Silent p.T806T 0.19 TCGA-CG-4305-01 17 78318484 78318484 C T RNF213 Missense_Mutation p.R2117C 0.16 benign(0.017) TCGA-CG-4305-01 17 78727978 78727978 C A RPTOR Missense_Mutation p.L275M 0.20 deleterious(0.04) probably_damaging(0.999) TCGA-CG-4305-01 17 78897301 78897301 C T RPTOR Missense_Mutation p.P879L 0.16 deleterious(0.01) probably_damaging(0.964) TCGA-CG-4305-01 17 79077412 79077412 C T BAIAP2 Silent p.G251G 0.24 TCGA-CG-4305-01 17 79508363 79508363 T C C17orf70 Missense_Mutation p.Y829C 0.17 tolerated(0.12) benign(0.045) TCGA-CG-4305-01 17 80141780 80141780 A T CCDC57 Missense_Mutation p.S361T 0.16 tolerated(0.34) benign(0.073) TCGA-CG-4305-01 17 80573851 80573851 C - WDR45B Frame_Shift_Del p.E327Sfs*11 0.16 TCGA-CG-4305-01 17 9631908 9631908 C A USP43 Silent p.P991P 0.12 TCGA-CG-4305-01 18 10671626 10671626 C T PIEZO2 Silent p.E2719E 0.12 TCGA-CG-4305-01 18 12802072 12802072 A G PTPN2 Missense_Mutation p.Y313H 0.17 tolerated(0.51) benign(0.053) TCGA-CG-4305-01 18 13055922 13055923 CT - CEP192 Frame_Shift_Del p.S1112* 0.27 TCGA-CG-4305-01 18 14848927 14848927 A T ANKRD30B Nonsense_Mutation p.R1013* 0.27 TCGA-CG-4305-01 18 18622646 18622646 C T ROCK1 Missense_Mutation p.A234T 0.22 deleterious(0.01) benign(0.231) TCGA-CG-4305-01 18 19209067 19209067 C T SNRPD1 Missense_Mutation p.R110C 0.22 deleterious(0) unknown(0) TCGA-CG-4305-01 18 19997258 19997258 G A CTAGE1 Missense_Mutation p.R173W 0.21 deleterious(0) probably_damaging(0.924) TCGA-CG-4305-01 18 20573099 20573099 C A RBBP8 Missense_Mutation p.L437M 0.12 tolerated(0.09) probably_damaging(0.914) TCGA-CG-4305-01 18 21114443 21114443 G A NPC1 Silent p.R1186R 0.12 TCGA-CG-4305-01 18 21121356 21121359 AGAG - NPC1 Frame_Shift_Del p.F763Rfs*17 0.19 TCGA-CG-4305-01 18 22804544 22804544 G A ZNF521 Missense_Mutation p.T1113M 0.22 tolerated(0.11) possibly_damaging(0.855) TCGA-CG-4305-01 18 25568495 25568495 A G CDH2 Silent p.S578S 0.11 TCGA-CG-4305-01 18 2707836 2707836 A G SMCHD1 Silent p.K726K 0.20 TCGA-CG-4305-01 18 2752539 2752539 C T SMCHD1 Silent p.C1445C 0.18 TCGA-CG-4305-01 18 30349862 30349862 G - KLHL14 Frame_Shift_Del p.V232Wfs*30 0.33 TCGA-CG-4305-01 18 33713227 33713227 T C ELP2 Silent p.N55N 0.12 TCGA-CG-4305-01 18 34298520 34298520 C T FHOD3 Missense_Mutation p.R912C 0.17 deleterious(0) probably_damaging(0.962) TCGA-CG-4305-01 18 42533097 42533097 T G SETBP1 Silent p.S1264S 0.26 TCGA-CG-4305-01 18 47340396 47340396 G T ACAA2 5'Flank 0.27 TCGA-CG-4305-01 18 55240556 55240556 G T FECH Missense_Mutation p.P85H 0.16 deleterious(0) probably_damaging(0.982) TCGA-CG-4305-01 18 56586342 56586342 G A ZNF532 Missense_Mutation p.A275T 0.18 deleterious(0.02) possibly_damaging(0.764) TCGA-CG-4305-01 18 5890416 5890416 C T TMEM200C Silent p.S549S 0.23 TCGA-CG-4305-01 18 59195263 59195263 G T CDH20 Nonsense_Mutation p.E361* 0.24 TCGA-CG-4305-01 18 61170598 61170598 G A SERPINB5 Silent p.Q257Q 0.29 TCGA-CG-4305-01 18 64202234 64202234 G A CDH19 Missense_Mutation p.A442V 0.20 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 18 7050823 7050823 G A LAMA1 Missense_Mutation p.A153V 0.18 deleterious(0) probably_damaging(0.999) TCGA-CG-4305-01 18 72999092 72999092 C A TSHZ1 Missense_Mutation p.P532H 0.15 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 18 76752144 76752144 C T SALL3 Silent p.S51S 0.36 TCGA-CG-4305-01 18 77171052 77171052 C T NFATC1 Silent p.P246P 0.30 TCGA-CG-4305-01 18 77896426 77896426 A - ADNP2 Frame_Shift_Del p.K1045Nfs*29 0.23 TCGA-CG-4305-01 18 9535730 9535730 G A RALBP1 Missense_Mutation p.R588H 0.21 tolerated(0.05) benign(0.052) TCGA-CG-4305-01 19 10204415 10204415 C A ANGPTL6 Missense_Mutation p.R302M 0.16 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 19 10218766 10218766 G A PPAN Missense_Mutation p.A157T 0.22 tolerated(0.15) probably_damaging(0.999) TCGA-CG-4305-01 19 10335348 10335348 G A S1PR2 Silent p.S78S 0.16 TCGA-CG-4305-01 19 10602646 10602646 T C KEAP1 Missense_Mutation p.H311R 0.21 tolerated(0.2) benign(0.001) TCGA-CG-4305-01 19 11304273 11304273 G A KANK2 Silent p.G161G 0.30 TCGA-CG-4305-01 19 12776529 12776529 A G MAN2B1 Missense_Mutation p.Y84H 0.23 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 19 12812476 12812476 A G TNPO2 Missense_Mutation p.F841S 0.24 deleterious(0.01) benign(0.167) TCGA-CG-4305-01 19 15285059 15285059 A G NOTCH3 Missense_Mutation p.L1519P 0.44 deleterious(0) probably_damaging(0.959) TCGA-CG-4305-01 19 15483890 15483890 C T AKAP8 Silent p.V211V 0.16 TCGA-CG-4305-01 19 15636311 15636311 G A CYP4F22 Missense_Mutation p.R55Q 0.21 tolerated(0.09) benign(0.003) TCGA-CG-4305-01 19 15648384 15648384 C T CYP4F22 Missense_Mutation p.R154W 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-CG-4305-01 19 15769071 15769071 T C CYP4F3 Intron 0.21 TCGA-CG-4305-01 19 16612361 16612361 C T C19orf44 Missense_Mutation p.S253L 0.10 tolerated(0.1) benign(0.036) TCGA-CG-4305-01 19 17396566 17396566 G A ANKLE1 Missense_Mutation p.C538Y 0.13 deleterious(0) probably_damaging(0.999) TCGA-CG-4305-01 19 18120452 18120452 C T ARRDC2 Missense_Mutation p.R181C 0.21 tolerated(0.13) benign(0.035) TCGA-CG-4305-01 19 18121027 18121027 C T ARRDC2 Missense_Mutation p.T291M 0.16 deleterious(0) possibly_damaging(0.899) TCGA-CG-4305-01 19 18375881 18375881 C T KIAA1683 Silent p.P823P 0.17 TCGA-CG-4305-01 19 18729233 18729233 C T TMEM59L Silent p.S277S 0.29 TCGA-CG-4305-01 19 19335242 19335242 G T NCAN Missense_Mutation p.G260C 0.14 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 19 19375644 19375644 G A TM6SF2 Silent p.R321R 0.15 TCGA-CG-4305-01 19 19606629 19606629 T C GATAD2A Missense_Mutation p.S231P 0.29 tolerated(0.37) benign(0.001) TCGA-CG-4305-01 19 19767469 19767469 C A ATP13A1 Missense_Mutation p.K361N 0.20 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 19 20308172 20308172 C T ZNF486 Missense_Mutation p.A218V 0.20 tolerated(0.09) benign(0.197) TCGA-CG-4305-01 19 22940245 22940245 A G ZNF99 Silent p.C822C 0.16 TCGA-CG-4305-01 19 22941839 22941839 C T ZNF99 Missense_Mutation p.G291D 0.15 tolerated(0.08) probably_damaging(0.987) TCGA-CG-4305-01 19 2832394 2832394 C T ZNF554 Missense_Mutation p.T116M 0.15 tolerated(0.11) possibly_damaging(0.454) TCGA-CG-4305-01 19 3179131 3179131 C T S1PR4 Missense_Mutation p.A114V 0.14 deleterious(0.02) benign(0.011) TCGA-CG-4305-01 19 3382065 3382065 G A NFIC Missense_Mutation p.R129Q 0.23 deleterious(0) probably_damaging(0.999) TCGA-CG-4305-01 19 34263463 34263463 T A CHST8 Missense_Mutation p.V257D 0.22 deleterious(0) probably_damaging(0.994) TCGA-CG-4305-01 19 34302308 34302308 G A KCTD15 Missense_Mutation p.A182T 0.25 tolerated(1) benign(0.004) TCGA-CG-4305-01 19 34843719 34843719 C T KIAA0355 Silent p.N1024N 0.28 TCGA-CG-4305-01 19 36210764 36210764 C - KMT2B Frame_Shift_Del p.P174Qfs*20 0.24 TCGA-CG-4305-01 19 36335025 36335025 C T NPHS1 Missense_Mutation p.R731Q 0.19 tolerated(0.28) benign(0.002) TCGA-CG-4305-01 19 3643305 3643306 AC - PIP5K1C Frame_Shift_Del p.S529Ifs*8 0.11 TCGA-CG-4305-01 19 36590367 36590367 C T WDR62 Missense_Mutation p.R863C 0.15 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 19 37382938 37382938 C T ZNF829 Missense_Mutation p.C333Y 0.12 tolerated(1) benign(0.316) TCGA-CG-4305-01 19 37441310 37441310 G A ZNF568 Missense_Mutation p.V419I 0.13 tolerated(0.07) benign(0.009) TCGA-CG-4305-01 19 38869929 38869929 C A PSMD8 Missense_Mutation p.L196I 0.24 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 19 39001390 39001390 G A RYR1 Missense_Mutation p.A3031T 0.22 benign(0.023) TCGA-CG-4305-01 19 39018400 39018400 A G RYR1 Silent p.S3600S 0.19 TCGA-CG-4305-01 19 39361401 39361401 T C RINL Missense_Mutation p.Y278C 0.21 tolerated(0.14) benign(0.006) TCGA-CG-4305-01 19 39399455 39399455 G A NFKBIB Missense_Mutation p.D352N 0.18 deleterious_low_confidence(0.02) benign(0.006) TCGA-CG-4305-01 19 39688716 39688716 C - NCCRP1 Frame_Shift_Del p.P122Lfs*33 0.20 TCGA-CG-4305-01 19 39961163 39961164 - GT SUPT5H Frame_Shift_Ins 0.18 TCGA-CG-4305-01 19 40366105 40366105 G T FCGBP Missense_Mutation p.P4710H 0.16 probably_damaging(0.998) TCGA-CG-4305-01 19 40395994 40395994 C T FCGBP Missense_Mutation p.R2468H 0.09 benign(0.07) TCGA-CG-4305-01 19 42260595 42260597 TTC - CEA Intron 0.26 TCGA-CG-4305-01 19 42599459 42599459 C T POU2F2 Silent p.P370P 0.20 TCGA-CG-4305-01 19 43866334 43866334 G A CD177 3'UTR 0.25 TCGA-CG-4305-01 19 44057634 44057634 G A XRCC1 Missense_Mutation p.R174C 0.16 deleterious(0) probably_damaging(0.996) TCGA-CG-4305-01 19 44130298 44130298 C T CADM4 Silent p.T214T 0.19 TCGA-CG-4305-01 19 44739650 44739650 A G ZNF227 Missense_Mutation p.E356G 0.17 deleterious(0) possibly_damaging(0.625) TCGA-CG-4305-01 19 4510529 4510529 C T PLIN4 Missense_Mutation p.R1134H 0.23 tolerated(0.21) benign(0.004) TCGA-CG-4305-01 19 45262843 45262843 C - BCL3 Frame_Shift_Del p.S448Pfs*34 0.36 TCGA-CG-4305-01 19 45911872 45911872 A - CD3EAP Frame_Shift_Del p.N218Ifs*4 0.19 TCGA-CG-4305-01 19 45997462 45997462 G A RTN2 Missense_Mutation p.T259M 0.23 deleterious_low_confidence(0.05) benign(0.075) TCGA-CG-4305-01 19 46057131 46057131 T C OPA3 Intron 0.20 TCGA-CG-4305-01 19 46375340 46375340 C T FOXA3 Missense_Mutation p.S26L 0.20 deleterious(0) unknown(0) TCGA-CG-4305-01 19 4651883 4651883 T C TNFAIP8L1 Translation_Start_Site p.M1? 0.19 deleterious(0) probably_damaging(0.985) TCGA-CG-4305-01 19 4685773 4685774 - G DPP9 Frame_Shift_Ins p.D633Gfs*51 0.21 TCGA-CG-4305-01 19 47572412 47572412 C G ZC3H4 Missense_Mutation p.E779Q 0.19 unknown(0) TCGA-CG-4305-01 19 47969003 47969003 A - SLC8A2 Frame_Shift_Del p.S220Pfs*12 0.22 TCGA-CG-4305-01 19 48845826 48845826 C T TMEM143 Silent p.L312L 0.17 TCGA-CG-4305-01 19 48879533 48879533 C T SYNGR4 Silent p.T221T 0.19 TCGA-CG-4305-01 19 49261364 49261364 G A FGF21 Missense_Mutation p.A173T 0.14 tolerated(0.55) benign(0.002) TCGA-CG-4305-01 19 49481210 49481210 T C GYS1 Missense_Mutation p.M427V 0.13 tolerated(0.25) benign(0.054) TCGA-CG-4305-01 19 49575336 49575336 G A KCNA7 Silent p.R169R 0.25 TCGA-CG-4305-01 19 49971789 49971789 C T ALDH16A1 Missense_Mutation p.A697V 0.16 tolerated(0.08) benign(0.108) TCGA-CG-4305-01 19 50305853 50305853 C T AP2A1 Missense_Mutation p.A726V 0.17 tolerated(0.6) possibly_damaging(0.483) TCGA-CG-4305-01 19 50957409 50957409 G A MYBPC2 Missense_Mutation p.V628M 0.30 tolerated(0.08) benign(0.104) TCGA-CG-4305-01 19 5110659 5110659 G A KDM4B Silent p.K315K 0.32 TCGA-CG-4305-01 19 51955642 51955642 G A SIGLEC8 Silent p.V497V 0.11 TCGA-CG-4305-01 19 5212258 5212258 G A PTPRS Silent p.A1591A 0.18 TCGA-CG-4305-01 19 52716250 52716250 G A PPP2R1A Missense_Mutation p.A232T 0.20 deleterious(0) possibly_damaging(0.767) TCGA-CG-4305-01 19 53913798 53913798 A G ZNF765 3'UTR 0.19 TCGA-CG-4305-01 19 54327438 54327438 G A NLRP12 5'UTR 0.16 TCGA-CG-4305-01 19 5456550 5456550 G A ZNRF4 Missense_Mutation p.V350M 0.18 tolerated(0.07) benign(0.256) TCGA-CG-4305-01 19 54968979 54968979 C T LENG8 Silent p.D595D 0.23 TCGA-CG-4305-01 19 56303675 56303675 C A NLRP11 Missense_Mutation p.E835D 0.22 deleterious(0.01) benign(0.275) TCGA-CG-4305-01 19 56303730 56303730 T - NLRP11 Frame_Shift_Del p.N817Ifs*7 0.20 TCGA-CG-4305-01 19 57133765 57133765 G A ZNF71 Silent p.T370T 0.15 TCGA-CG-4305-01 19 58152147 58152147 G T ZNF211 Missense_Mutation p.R163M 0.16 tolerated(0.05) benign(0.013) TCGA-CG-4305-01 19 58850593 58850593 G T ZSCAN22 Silent p.T459T 0.22 TCGA-CG-4305-01 19 6374236 6374236 C T ALKBH7 Missense_Mutation p.T76I 0.17 tolerated(0.09) benign(0.032) TCGA-CG-4305-01 19 6718271 6718271 G A C3 Silent p.T140T 0.12 TCGA-CG-4305-01 19 681492 681492 G A FSTL3 Missense_Mutation p.C222Y 0.23 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 19 6986350 6986350 C T EMR4P RNA 0.31 TCGA-CG-4305-01 19 7120730 7120730 G A INSR Missense_Mutation p.T1187M 0.22 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 19 7592423 7592423 C - MCOLN1 Frame_Shift_Del p.E199Sfs*39 0.25 TCGA-CG-4305-01 19 8028545 8028545 C T ELAVL1 Missense_Mutation p.G268D 0.04 deleterious(0) probably_damaging(0.991) TCGA-CG-4305-01 19 8182094 8182094 C T FBN3 Missense_Mutation p.G1182E 0.13 tolerated(0.94) possibly_damaging(0.597) TCGA-CG-4305-01 19 8808202 8808202 C T ACTL9 Missense_Mutation p.D284N 0.12 deleterious(0) probably_damaging(0.999) TCGA-CG-4305-01 1 101343423 101343423 C A EXTL2 Missense_Mutation p.M14I 0.17 tolerated_low_confidence(0.23) benign(0.02) TCGA-CG-4305-01 1 103427746 103427746 G A COL11A1 Missense_Mutation p.L1034F 0.15 unknown(0) TCGA-CG-4305-01 1 104203067 104203067 G A AMY1A Missense_Mutation p.A322T 0.06 deleterious(0.04) possibly_damaging(0.82) TCGA-CG-4305-01 1 104234010 104234010 T C AMY1B Missense_Mutation p.Y336C 0.53 deleterious(0) probably_damaging(0.999) TCGA-CG-4305-01 1 108307782 108307782 C T VAV3 Silent p.G279G 0.25 TCGA-CG-4305-01 1 109440679 109440681 AGA - GPSM2 In_Frame_Del p.E173del 0.23 TCGA-CG-4305-01 1 109560141 109560141 T - WDR47 Frame_Shift_Del p.R81Gfs*7 0.17 TCGA-CG-4305-01 1 109810580 109810580 C T CELSR2 Silent p.S2072S 0.15 TCGA-CG-4305-01 1 110121917 110121917 G A GNAI3 Missense_Mutation p.R132Q 0.19 tolerated(0.42) benign(0.002) TCGA-CG-4305-01 1 110906299 110906299 C T SLC16A4 3'UTR 0.21 TCGA-CG-4305-01 1 117637937 117637938 TC - TTF2 Frame_Shift_Del p.L996Vfs*60 0.13 TCGA-CG-4305-01 1 1179802 1179802 C G FAM132A Missense_Mutation p.G85R 0.22 deleterious(0.01) benign(0.067) TCGA-CG-4305-01 1 1190787 1190787 G A UBE2J2 Silent p.D208D 0.17 TCGA-CG-4305-01 1 120054205 120054205 C T HSD3B1 Silent p.D75D 0.22 TCGA-CG-4305-01 1 144815988 144815988 G A NBPF9 Silent p.V194V 0.14 TCGA-CG-4305-01 1 145533915 145533915 C T ITGA10 Missense_Mutation p.R521C 0.16 deleterious(0) probably_damaging(0.953) TCGA-CG-4305-01 1 145578385 145578385 C - PIAS3 Frame_Shift_Del p.P118Lfs*12 0.25 TCGA-CG-4305-01 1 145761219 145761219 G A PDZK1 Silent p.L344L 0.12 TCGA-CG-4305-01 1 146634134 146634134 G - PRKAB2 Frame_Shift_Del p.P186Qfs*53 0.21 TCGA-CG-4305-01 1 1469488 1469488 C T ATAD3A 3'UTR 0.11 TCGA-CG-4305-01 1 147380700 147380700 C T GJA8 Silent p.I206I 0.24 TCGA-CG-4305-01 1 151143428 151143428 C T TMOD4 Missense_Mutation p.A280T 0.31 tolerated(0.76) benign(0.001) TCGA-CG-4305-01 1 151785790 151785790 G A RORC Missense_Mutation p.R367W 0.19 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 1 152080509 152080509 C A TCHH Missense_Mutation p.E1728D 0.20 unknown(0) TCGA-CG-4305-01 1 152083351 152083351 C T TCHH Missense_Mutation p.R781H 0.20 unknown(0) TCGA-CG-4305-01 1 152382422 152382422 G A CRNN Missense_Mutation p.T379M 0.21 tolerated(0.12) benign(0.012) TCGA-CG-4305-01 1 153065945 153065945 A G SPRR2E 3'UTR 0.17 TCGA-CG-4305-01 1 153588392 153588392 G T S100A14 5'UTR 0.24 TCGA-CG-4305-01 1 153609097 153609097 A - CHTOP Frame_Shift_Del p.S13Afs*7 0.30 TCGA-CG-4305-01 1 155148109 155148109 G A TRIM46 Missense_Mutation p.R104Q 0.27 deleterious(0.01) possibly_damaging(0.649) TCGA-CG-4305-01 1 155288502 155288502 C - FDPS Frame_Shift_Del p.Q246Rfs*31 0.24 TCGA-CG-4305-01 1 156040014 156040014 G A RAB25 Missense_Mutation p.G193D 0.22 tolerated_low_confidence(0.1) benign(0.002) TCGA-CG-4305-01 1 156146488 156146488 G T SEMA4A Missense_Mutation p.K662N 0.21 tolerated(0.39) benign(0.021) TCGA-CG-4305-01 1 156230293 156230293 G A SMG5 Silent p.H744H 0.20 TCGA-CG-4305-01 1 156513774 156513774 T C IQGAP3 Silent p.L843L 0.20 TCGA-CG-4305-01 1 156618552 156618552 G A BCAN Missense_Mutation p.R321H 0.22 deleterious(0) probably_damaging(0.998) TCGA-CG-4305-01 1 156708387 156708387 G - MRPL24 Frame_Shift_Del p.P37Hfs*29 0.19 TCGA-CG-4305-01 1 157660081 157660081 C - FCRL3 Frame_Shift_Del p.A552Pfs*7 0.15 TCGA-CG-4305-01 1 158576272 158576272 T C OR10Z1 Missense_Mutation p.L15P 0.16 deleterious(0.05) possibly_damaging(0.603) TCGA-CG-4305-01 1 159284423 159284423 C T OR10J3 Silent p.V9V 0.17 TCGA-CG-4305-01 1 159923100 159923100 G C SLAMF9 Nonsense_Mutation p.Y130* 0.19 TCGA-CG-4305-01 1 160001078 160001078 G A PIGM Missense_Mutation p.A151V 0.17 tolerated(0.11) possibly_damaging(0.52) TCGA-CG-4305-01 1 160156137 160156137 T G ATP1A4 Missense_Mutation p.L1014R 0.19 tolerated(0.1) benign(0.201) TCGA-CG-4305-01 1 160771611 160771611 C A LY9 Intron 0.18 TCGA-CG-4305-01 1 161017717 161017718 - G ARHGAP30 Frame_Shift_Ins p.R1032Qfs*6 0.19 TCGA-CG-4305-01 1 161019226 161019226 T A ARHGAP30 Silent p.G558G 0.19 TCGA-CG-4305-01 1 161199442 161199442 G A TOMM40L 3'UTR 0.15 TCGA-CG-4305-01 1 161203117 161203117 C T NR1I3 Missense_Mutation p.A84T 0.18 tolerated(0.1) benign(0.005) TCGA-CG-4305-01 1 161276654 161276654 G A MPZ Missense_Mutation p.R98C 0.23 deleterious(0) probably_damaging(0.999) TCGA-CG-4305-01 1 161681777 161681777 G T FCRLA Nonsense_Mutation p.G208* 0.27 TCGA-CG-4305-01 1 161953404 161953404 A G OLFML2B 3'UTR 0.14 TCGA-CG-4305-01 1 161989931 161989931 G A OLFML2B Silent p.G72G 0.22 TCGA-CG-4305-01 1 16256697 16256697 C T SPEN Missense_Mutation p.A1321V 0.14 probably_damaging(0.993) TCGA-CG-4305-01 1 16259137 16259137 A G SPEN Silent p.S2134S 0.18 TCGA-CG-4305-01 1 169434942 169434942 G A SLC19A2 3'UTR 0.35 TCGA-CG-4305-01 1 17250929 17250929 C T CROCC Silent p.A102A 0.16 TCGA-CG-4305-01 1 173551081 173551081 G A SLC9C2 Missense_Mutation p.A236V 0.12 deleterious(0.02) possibly_damaging(0.742) TCGA-CG-4305-01 1 176640157 176640157 T C PAPPA2 Silent p.T681T 0.22 TCGA-CG-4305-01 1 179363035 179363036 - AG AXDND1 Intron p.Y291Gfs*13 0.18 TCGA-CG-4305-01 1 17958909 17958909 C A ARHGEF10L Missense_Mutation p.R560S 0.16 deleterious(0) probably_damaging(0.97) TCGA-CG-4305-01 1 180165497 180165497 C T QSOX1 Silent p.D523D 0.17 TCGA-CG-4305-01 1 180471273 180471273 G A ACBD6 Silent p.A43A 0.21 TCGA-CG-4305-01 1 181453073 181453073 G A CACNA1E Missense_Mutation p.V65I 0.20 deleterious(0) benign(0.103) TCGA-CG-4305-01 1 181767624 181767624 C A CACNA1E Missense_Mutation p.A2199D 0.26 deleterious(0.03) benign(0.069) TCGA-CG-4305-01 1 182026561 182026561 C T ZNF648 Silent p.P195P 0.25 TCGA-CG-4305-01 1 182555115 182555115 G T RNASEL Missense_Mutation p.A276E 0.15 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 1 184677410 184677410 C T EDEM3 Silent p.Q638Q 0.15 TCGA-CG-4305-01 1 186017944 186017945 - A HMCN1 Frame_Shift_Ins p.N2186Kfs*16 0.15 TCGA-CG-4305-01 1 186281277 186281277 T - TPR 3'UTR 0.20 TCGA-CG-4305-01 1 18807675 18807675 C T KLHDC7A Missense_Mutation p.A67V 0.32 deleterious(0.04) benign(0.057) TCGA-CG-4305-01 1 18809031 18809031 G A KLHDC7A Missense_Mutation p.R519H 0.13 tolerated(1) benign(0) TCGA-CG-4305-01 1 197026436 197026436 G A F13B Missense_Mutation p.T322I 0.19 deleterious(0) probably_damaging(0.995) TCGA-CG-4305-01 1 19992413 19992413 C T HTR6 Missense_Mutation p.A56V 0.25 tolerated(0.09) benign(0.311) TCGA-CG-4305-01 1 200008889 200008890 - G NR5A2 Frame_Shift_Ins p.E58Gfs*15 0.19 TCGA-CG-4305-01 1 202894140 202894140 G A KLHL12 Silent p.L51L 0.20 TCGA-CG-4305-01 1 203098114 203098114 G A ADORA1 Missense_Mutation p.V49M 0.23 deleterious(0) possibly_damaging(0.853) TCGA-CG-4305-01 1 203311596 203311596 C T FMOD Missense_Mutation p.V336M 0.17 deleterious(0.04) possibly_damaging(0.507) TCGA-CG-4305-01 1 203316578 203316578 C T FMOD Missense_Mutation p.R274Q 0.21 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 1 204131189 204131189 C T REN Silent p.L67L 0.23 TCGA-CG-4305-01 1 204948583 204948583 G A NFASC Missense_Mutation p.R691Q 0.24 tolerated(0.59) benign(0.021) TCGA-CG-4305-01 1 205034993 205034993 C T CNTN2 Missense_Mutation p.T591M 0.17 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 1 205065950 205065950 G - RBBP5 Frame_Shift_Del p.P419Hfs*9 0.28 TCGA-CG-4305-01 1 207753935 207753935 G T CR1 Missense_Mutation p.K1731N 0.22 tolerated(0.14) possibly_damaging(0.886) TCGA-CG-4305-01 1 207785031 207785031 C T CR1 Missense_Mutation p.P2102L 0.20 tolerated(0.71) benign(0.136) TCGA-CG-4305-01 1 20827514 20827514 A G MUL1 Missense_Mutation p.L243P 0.19 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 1 209799235 209799235 G A LAMB3 Silent p.C578C 0.09 TCGA-CG-4305-01 1 21052443 21052443 G A SH2D5 Silent p.C120C 0.32 TCGA-CG-4305-01 1 213414588 213414588 T G RPS6KC1 Missense_Mutation p.L590R 0.21 deleterious(0) probably_damaging(0.999) TCGA-CG-4305-01 1 215990384 215990384 T - USH2A Frame_Shift_Del p.K3175Nfs*42 0.20 TCGA-CG-4305-01 1 220145457 220145457 A G EPRS Missense_Mutation p.V1426A 0.18 tolerated(0.19) benign(0.004) TCGA-CG-4305-01 1 220246279 220246279 C A BPNT1 Silent p.V82V 0.21 TCGA-CG-4305-01 1 223986208 223986208 C T TP53BP2 Missense_Mutation p.A553T 0.23 tolerated(0.29) benign(0.002) TCGA-CG-4305-01 1 226048598 226048598 C T TMEM63A Nonsense_Mutation p.W395* 0.23 TCGA-CG-4305-01 1 227079049 227079049 C T PSEN2 Silent p.Y319Y 0.17 TCGA-CG-4305-01 1 228494756 228494756 G A OBSCN Silent p.V4984V 0.19 TCGA-CG-4305-01 1 229779326 229779326 G - URB2 Frame_Shift_Del p.G1228Efs*8 0.19 TCGA-CG-4305-01 1 230459152 230459152 G A PGBD5 3'UTR 0.18 TCGA-CG-4305-01 1 231349596 231349596 G A TRIM67 Missense_Mutation p.G720D 0.14 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 1 23208888 23208888 G A EPHB2 Missense_Mutation p.R447H 0.14 tolerated(0.09) benign(0.048) TCGA-CG-4305-01 1 233134036 233134036 G A PCNXL2 Nonsense_Mutation p.Q1918* 0.22 TCGA-CG-4305-01 1 234601428 234601428 C T TARBP1 Silent p.A425A 0.17 TCGA-CG-4305-01 1 235634232 235634232 C T B3GALNT2 Missense_Mutation p.G232S 0.17 deleterious(0.04) possibly_damaging(0.588) TCGA-CG-4305-01 1 237729972 237729972 C T RYR2 Missense_Mutation p.T1107M 0.24 benign(0.193) TCGA-CG-4305-01 1 240071798 240071798 C T CHRM3 Silent p.S349S 0.17 TCGA-CG-4305-01 1 240072444 240072444 A - CHRM3 Frame_Shift_Del p.K567Rfs*31 0.42 TCGA-CG-4305-01 1 24083458 24083458 G A TCEB3 Silent p.P726P 0.19 TCGA-CG-4305-01 1 245865967 245865967 C T KIF26B 3'UTR 0.06 TCGA-CG-4305-01 1 245912839 245912839 C T SMYD3 3'Flank 0.20 TCGA-CG-4305-01 1 247263838 247263838 A G ZNF669 Silent p.I411I 0.19 TCGA-CG-4305-01 1 24989225 24989225 C T SRRM1 Missense_Mutation p.R520W 0.15 unknown(0) TCGA-CG-4305-01 1 27105931 27105931 G - ARID1A Frame_Shift_Del p.D1850Tfs*33 0.20 TCGA-CG-4305-01 1 27744891 27744891 A T WASF2 Missense_Mutation p.F100I 0.20 deleterious(0) unknown(0) TCGA-CG-4305-01 1 27873977 27873977 G - AHDC1 Frame_Shift_Del p.V1551Cfs*57 0.26 TCGA-CG-4305-01 1 27875066 27875066 G A AHDC1 Silent p.S1187S 0.16 TCGA-CG-4305-01 1 27876869 27876869 T - AHDC1 Frame_Shift_Del p.K586Nfs*37 0.12 TCGA-CG-4305-01 1 28218705 28218705 T G RPA2 Missense_Mutation p.D261A 0.11 deleterious(0.03) probably_damaging(0.951) TCGA-CG-4305-01 1 29069581 29069581 C - YTHDF2 Frame_Shift_Del p.P268Rfs*2 0.22 TCGA-CG-4305-01 1 29638251 29638251 C T PTPRU Missense_Mutation p.R1028C 0.12 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 1 32145140 32145140 G - COL16A1 Intron 0.29 TCGA-CG-4305-01 1 35650014 35650015 - A SFPQ 3'UTR 0.14 TCGA-CG-4305-01 1 35836079 35836080 - A ZMYM4 Frame_Shift_Ins p.I347Nfs*62 0.16 TCGA-CG-4305-01 1 36028856 36028856 T A NCDN Missense_Mutation p.I480N 0.14 deleterious(0) probably_damaging(0.983) TCGA-CG-4305-01 1 36823958 36823959 - C STK40 Frame_Shift_Ins p.D75Gfs*45 0.25 TCGA-CG-4305-01 1 36932116 36932116 T C CSF3R Missense_Mutation p.K812E 0.24 deleterious(0.03) possibly_damaging(0.596) TCGA-CG-4305-01 1 3732035 3732035 G A CEP104 Silent p.A903A 0.17 TCGA-CG-4305-01 1 38274674 38274674 C - C1orf122 Frame_Shift_Del p.Q90Sfs*42 0.27 TCGA-CG-4305-01 1 38304324 38304324 C T MTF1 Missense_Mutation p.R251Q 0.21 deleterious(0) probably_damaging(0.973) TCGA-CG-4305-01 1 38344054 38344054 C T INPP5B Intron 0.15 TCGA-CG-4305-01 1 39340211 39340211 G A GJA9 3'UTR 0.14 TCGA-CG-4305-01 1 40702626 40702626 C T RLF Missense_Mutation p.A751V 0.13 deleterious(0) probably_damaging(0.987) TCGA-CG-4305-01 1 40880951 40880951 T C SMAP2 Silent p.P193P 0.19 TCGA-CG-4305-01 1 40961306 40961306 A G ZFP69 Missense_Mutation p.N386D 0.21 tolerated(0.64) benign(0.403) TCGA-CG-4305-01 1 42880544 42880544 C T RIMKLA Missense_Mutation p.R359W 0.17 tolerated_low_confidence(0.1) benign(0.001) TCGA-CG-4305-01 1 42915622 42915622 C A ZMYND12 Silent p.R73R 0.27 TCGA-CG-4305-01 1 43002166 43002166 A - CCDC30 Frame_Shift_Del p.N6Mfs*29 0.22 TCGA-CG-4305-01 1 43204130 43204130 C T CLDN19 Missense_Mutation p.R117H 0.14 deleterious(0) probably_damaging(0.983) TCGA-CG-4305-01 1 44433043 44433043 C T IPO13 Silent p.F890F 0.17 TCGA-CG-4305-01 1 45473119 45473119 C T HECTD3 Missense_Mutation p.R490Q 0.25 tolerated(0.07) benign(0.005) TCGA-CG-4305-01 1 46826501 46826501 G A NSUN4 Splice_Site p.X293_splice 0.18 TCGA-CG-4305-01 1 47534426 47534426 A - CYP4Z1 Frame_Shift_Del p.R105Dfs*22 0.10 TCGA-CG-4305-01 1 52870412 52870412 G A PRPF38A 5'UTR 0.17 TCGA-CG-4305-01 1 52991403 52991403 T - ZCCHC11 Frame_Shift_Del p.I184Ffs*11 0.17 TCGA-CG-4305-01 1 53925262 53925262 C T DMRTB1 Missense_Mutation p.R46C 0.29 deleterious(0) probably_damaging(0.979) TCGA-CG-4305-01 1 57169933 57169933 C - PRKAA2 Frame_Shift_Del p.P361Qfs*3 0.19 TCGA-CG-4305-01 1 6537676 6537676 G C PLEKHG5 Missense_Mutation p.P65A 0.25 deleterious(0) probably_damaging(0.997) TCGA-CG-4305-01 1 65855087 65855087 C A DNAJC6 Missense_Mutation p.L448I 0.17 deleterious(0.02) probably_damaging(0.998) TCGA-CG-4305-01 1 67101641 67101641 C T SGIP1 Silent p.H38H 0.13 TCGA-CG-4305-01 1 67558859 67558859 A G C1orf141 Silent p.T344T 0.17 TCGA-CG-4305-01 1 68171151 68171151 T - GNG12 Frame_Shift_Del p.T68Lfs*22 0.21 TCGA-CG-4305-01 1 75009694 75009694 T - TNNI3K 3'UTR 0.31 TCGA-CG-4305-01 1 75139225 75139225 C - C1orf173 5'UTR 0.18 TCGA-CG-4305-01 1 77779512 77779512 G A AK5 Intron 0.21 TCGA-CG-4305-01 1 85624662 85624662 T A SYDE2 Missense_Mutation p.D1119V 0.19 deleterious(0) possibly_damaging(0.774) TCGA-CG-4305-01 1 86965770 86965771 TT - CLCA1 3'UTR 0.31 TCGA-CG-4305-01 1 89206880 89206881 - A PKN2 Frame_Shift_Ins p.S89Ifs*3 0.19 TCGA-CG-4305-01 1 8922984 8922984 G A ENO1 Silent p.C399C 0.21 TCGA-CG-4305-01 1 91404466 91404466 A G ZNF644 Silent p.S815S 0.17 TCGA-CG-4305-01 1 91985737 91985737 C T CDC7 Nonsense_Mutation p.R411* 0.11 TCGA-CG-4305-01 1 92711247 92711247 T - C1orf146 3'UTR 0.22 TCGA-CG-4305-01 1 92767148 92767148 G A RPAP2 Splice_Site p.X78_splice 0.21 TCGA-CG-4305-01 1 92789302 92789302 C T RPAP2 Silent p.G275G 0.10 TCGA-CG-4305-01 20 13463963 13463963 C T TASP1 Missense_Mutation p.R299H 0.12 deleterious(0.01) possibly_damaging(0.68) TCGA-CG-4305-01 20 23614533 23614533 G T CST3 Intron 0.14 TCGA-CG-4305-01 20 24949624 24949624 C - APMAP Frame_Shift_Del p.Y316Tfs*29 0.12 TCGA-CG-4305-01 20 2840753 2840753 C A VPS16 Missense_Mutation p.L66I 0.27 tolerated(1) benign(0.048) TCGA-CG-4305-01 20 2969091 2969091 G A PTPRA Missense_Mutation p.D237N 0.14 deleterious(0.03) probably_damaging(0.989) TCGA-CG-4305-01 20 30126018 30126018 A G HM13 Missense_Mutation p.M107V 0.15 tolerated(0.55) benign(0.006) TCGA-CG-4305-01 20 30521638 30521638 T C TTLL9 Missense_Mutation p.S262P 0.14 deleterious(0.01) benign(0.008) TCGA-CG-4305-01 20 30904022 30904022 C T KIF3B Missense_Mutation p.A469V 0.17 tolerated(0.06) benign(0.258) TCGA-CG-4305-01 20 31699339 31699339 A G BPIFB4 3'UTR 0.35 TCGA-CG-4305-01 20 32332958 32332958 G A ZNF341 Silent p.S64S 0.19 TCGA-CG-4305-01 20 33342667 33342667 C T NCOA6 Missense_Mutation p.M511I 0.13 benign(0.001) TCGA-CG-4305-01 20 34218826 34218826 T C CPNE1 Missense_Mutation p.D336G 0.15 deleterious(0) probably_damaging(0.998) TCGA-CG-4305-01 20 35433186 35433186 C A SOGA1 Missense_Mutation p.K1013N 0.05 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 20 36686021 36686021 A G RPRD1B Missense_Mutation p.Q168R 0.14 tolerated(0.58) benign(0.001) TCGA-CG-4305-01 20 37356284 37356284 T G SLC32A1 Missense_Mutation p.C194G 0.11 deleterious(0.01) possibly_damaging(0.707) TCGA-CG-4305-01 20 3838363 3838363 G A MAVS Missense_Mutation p.G67S 0.17 deleterious(0.01) possibly_damaging(0.827) TCGA-CG-4305-01 20 40102126 40102126 G A CHD6 Missense_Mutation p.R834W 0.17 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 20 40713354 40713354 G A PTPRT Silent p.D1368D 0.19 TCGA-CG-4305-01 20 40747077 40747077 A G PTPRT Missense_Mutation p.I983T 0.18 deleterious(0) possibly_damaging(0.615) TCGA-CG-4305-01 20 43355865 43355865 C T WISP2 Nonsense_Mutation p.R224* 0.17 TCGA-CG-4305-01 20 43566708 43566708 G A PABPC1L Missense_Mutation p.R551H 0.11 deleterious(0.04) benign(0.344) TCGA-CG-4305-01 20 43727255 43727255 C T KCNS1 Missense_Mutation p.R53H 0.29 tolerated(0.58) benign(0.004) TCGA-CG-4305-01 20 45354636 45354636 G A SLC2A10 Missense_Mutation p.V321M 0.17 tolerated(0.1) benign(0.146) TCGA-CG-4305-01 20 46251037 46251037 C T NCOA3 Nonsense_Mutation p.R16* 0.12 TCGA-CG-4305-01 20 4705306 4705306 C T PRND Missense_Mutation p.R37W 0.23 deleterious_low_confidence(0) possibly_damaging(0.876) TCGA-CG-4305-01 20 472991 472991 C A CSNK2A1 Missense_Mutation p.W176C 0.17 deleterious(0) probably_damaging(0.998) TCGA-CG-4305-01 20 47630223 47630223 A G ARFGEF2 Silent p.V1347V 0.17 TCGA-CG-4305-01 20 47886982 47886982 A G ZNFX1 Missense_Mutation p.M456T 0.18 deleterious(0) possibly_damaging(0.722) TCGA-CG-4305-01 20 50133480 50133480 G A NFATC2 Missense_Mutation p.A392V 0.17 tolerated(0.09) benign(0.002) TCGA-CG-4305-01 20 50217815 50217815 G - ATP9A Frame_Shift_Del p.L1027Sfs*55 0.18 TCGA-CG-4305-01 20 50769032 50769032 G A ZFP64 Missense_Mutation p.P567S 0.20 tolerated(0.13) probably_damaging(0.996) TCGA-CG-4305-01 20 50769441 50769441 G A ZFP64 Silent p.C430C 0.27 TCGA-CG-4305-01 20 52645024 52645024 G A BCAS1 Silent p.D210D 0.20 TCGA-CG-4305-01 20 54824345 54824345 C T MC3R Missense_Mutation p.A149V 0.15 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 20 5579450 5579450 A G GPCPD1 Missense_Mutation p.C23R 0.22 deleterious(0.01) probably_damaging(0.981) TCGA-CG-4305-01 20 57766684 57766684 T A ZNF831 Missense_Mutation p.S204T 0.13 tolerated(0.26) benign(0.237) TCGA-CG-4305-01 20 58348477 58348477 A G PHACTR3 Missense_Mutation p.R299G 0.14 deleterious(0) probably_damaging(0.997) TCGA-CG-4305-01 20 58457178 58457178 A C SYCP2 Missense_Mutation p.F858V 0.11 tolerated(0.06) benign(0.076) TCGA-CG-4305-01 20 58490556 58490556 C T SYCP2 Missense_Mutation p.R188Q 0.11 deleterious(0.01) possibly_damaging(0.907) TCGA-CG-4305-01 20 58519297 58519297 C T FAM217B Missense_Mutation p.S100L 0.13 deleterious(0) probably_damaging(0.999) TCGA-CG-4305-01 20 60965956 60965956 G A CABLES2 3'UTR 0.28 TCGA-CG-4305-01 20 61441914 61441914 C T OGFR Silent p.V154V 0.12 TCGA-CG-4305-01 20 61576265 61576265 C T GID8 3'UTR 0.18 TCGA-CG-4305-01 20 61950424 61950424 C - COL20A1 Frame_Shift_Del p.L895Yfs*27 0.18 TCGA-CG-4305-01 20 62203577 62203577 G T HELZ2 Silent p.A54A 0.20 TCGA-CG-4305-01 20 62373487 62373487 C T SLC2A4RG Missense_Mutation p.P195L 0.19 deleterious(0) benign(0.09) TCGA-CG-4305-01 20 62729726 62729726 C T OPRL1 Silent p.L229L 0.12 TCGA-CG-4305-01 20 745873 745873 C T SLC52A3 Silent p.T182T 0.15 TCGA-CG-4305-01 20 9438112 9438112 G A PLCB4 Silent p.T1004T 0.23 TCGA-CG-4305-01 21 16339612 16339612 A G NRIP1 Missense_Mutation p.M301T 0.16 deleterious(0) benign(0.205) TCGA-CG-4305-01 21 26979736 26979736 G A MRPL39 Missense_Mutation p.P18S 0.22 tolerated_low_confidence(0.25) benign(0.007) TCGA-CG-4305-01 21 28338229 28338229 G A ADAMTS5 Missense_Mutation p.A161V 0.17 tolerated(0.26) benign(0.419) TCGA-CG-4305-01 21 34635606 34635606 C T IFNAR2 Missense_Mutation p.S450L 0.05 tolerated(0.28) benign(0.001) TCGA-CG-4305-01 21 34726001 34726001 C T IFNAR1 Missense_Mutation p.P451L 0.22 tolerated(0.67) benign(0.004) TCGA-CG-4305-01 21 37583892 37583892 T C DOPEY2 Silent p.L241L 0.19 TCGA-CG-4305-01 21 40559023 40559024 - T BRWD1 Frame_Shift_Ins p.E2298Rfs*6 0.19 TCGA-CG-4305-01 21 41151197 41151197 G A IGSF5 Missense_Mutation p.C300Y 0.21 tolerated(0.93) benign(0.114) TCGA-CG-4305-01 21 43161140 43161140 G T RIPK4 Missense_Mutation p.A738E 0.18 deleterious(0) possibly_damaging(0.884) TCGA-CG-4305-01 21 46047615 46047615 C - KRTAP10-9 Frame_Shift_Del p.C178Afs*203 0.24 TCGA-CG-4305-01 21 47537842 47537842 G T COL6A2 Missense_Mutation p.G370C 0.16 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 21 47581501 47581501 G A SPATC1L Missense_Mutation p.P272L 0.18 deleterious(0) probably_damaging(0.986) TCGA-CG-4305-01 21 48071777 48071777 C T PRMT2 Intron 0.05 TCGA-CG-4305-01 22 19241679 19241681 CTT - CLTCL1 In_Frame_Del p.E107del 0.22 TCGA-CG-4305-01 22 19865688 19865688 G - TXNRD2 Frame_Shift_Del p.P457Hfs*34 0.14 TCGA-CG-4305-01 22 19965533 19965533 G A ARVCF Missense_Mutation p.A549V 0.11 deleterious(0) probably_damaging(0.935) TCGA-CG-4305-01 22 21098990 21098990 G A PI4KA Missense_Mutation p.R1128C 0.17 deleterious(0) probably_damaging(0.972) TCGA-CG-4305-01 22 21134357 21134357 T G SERPIND1 Missense_Mutation p.F253V 0.18 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 22 22277306 22277306 A G PPM1F 3'UTR 0.13 TCGA-CG-4305-01 22 22279874 22279874 G A PPM1F Intron 0.29 TCGA-CG-4305-01 22 24135859 24135859 C - SMARCB1 Frame_Shift_Del p.T118Pfs*25 0.19 TCGA-CG-4305-01 22 30951162 30951162 G A GAL3ST1 Silent p.H350H 0.24 TCGA-CG-4305-01 22 31859740 31859740 C T EIF4ENIF1 Missense_Mutation p.R171H 0.20 deleterious(0) probably_damaging(0.998) TCGA-CG-4305-01 22 32272206 32272206 G - DEPDC5 Frame_Shift_Del p.G1245Afs*7 0.17 TCGA-CG-4305-01 22 35783051 35783051 C T HMOX1 Missense_Mutation p.A173V 0.24 tolerated(0.05) benign(0.001) TCGA-CG-4305-01 22 36624266 36624266 C T APOL2 Silent p.K66K 0.22 TCGA-CG-4305-01 22 36682871 36682871 G A MYH9 Missense_Mutation p.R1652C 0.21 probably_damaging(0.998) TCGA-CG-4305-01 22 37325725 37325725 G A CSF2RB Silent p.G198G 0.18 TCGA-CG-4305-01 22 38212245 38212245 C T GCAT Missense_Mutation p.S368L 0.14 tolerated(0.5) benign(0.009) TCGA-CG-4305-01 22 39826095 39826095 C A TAB1 Silent p.L461L 0.17 TCGA-CG-4305-01 22 40802507 40802507 G A SGSM3 Silent p.S342S 0.25 TCGA-CG-4305-01 22 41257517 41257517 C T DNAJB7 Missense_Mutation p.G161D 0.15 tolerated(0.1) benign(0.004) TCGA-CG-4305-01 22 42970767 42970767 C T SERHL2 3'Flank 0.33 TCGA-CG-4305-01 22 43926824 43926824 C T EFCAB6 Silent p.T1418T 0.19 TCGA-CG-4305-01 22 45571922 45571922 G A NUP50 Missense_Mutation p.A101T 0.12 tolerated(0.79) benign(0.001) TCGA-CG-4305-01 22 45996204 45996204 C T FBLN1 Missense_Mutation p.R664W 0.15 deleterious(0) possibly_damaging(0.876) TCGA-CG-4305-01 22 46655212 46655212 A G PKDREJ Silent p.D1336D 0.11 TCGA-CG-4305-01 22 47193446 47193446 C T TBC1D22A Missense_Mutation p.A189V 0.31 tolerated(0.27) benign(0.012) TCGA-CG-4305-01 22 50279870 50279870 C T ZBED4 Missense_Mutation p.R854W 0.23 deleterious(0) probably_damaging(0.999) TCGA-CG-4305-01 22 50523291 50523291 C T MLC1 Missense_Mutation p.R14Q 0.14 tolerated_low_confidence(0.07) benign(0.246) TCGA-CG-4305-01 22 50591566 50591566 G A MOV10L1 Silent p.A995A 0.16 TCGA-CG-4305-01 22 50656171 50656171 G A TUBGCP6 Silent p.D1818D 0.19 TCGA-CG-4305-01 2 101192940 101192940 C T PDCL3 Silent p.S234S 0.07 TCGA-CG-4305-01 2 102499030 102499030 C T MAP4K4 Missense_Mutation p.R990C 0.17 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CG-4305-01 2 105858406 105858406 G A GPR45 Missense_Mutation p.A31T 0.22 tolerated(0.13) benign(0.002) TCGA-CG-4305-01 2 107041268 107041268 G A RGPD3 Missense_Mutation p.T1052I 0.17 deleterious(0.02) possibly_damaging(0.856) TCGA-CG-4305-01 2 109088059 109088059 G A GCC2 Silent p.Q758Q 0.27 TCGA-CG-4305-01 2 110373584 110373584 A G SOWAHC Silent p.E506E 0.12 TCGA-CG-4305-01 2 111556607 111556607 C T ACOXL Silent p.I159I 0.18 TCGA-CG-4305-01 2 113788675 113788675 A G IL36B Missense_Mutation p.L24P 0.18 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CG-4305-01 2 120885423 120885423 T C EPB41L5 Silent p.Y499Y 0.27 TCGA-CG-4305-01 2 121992863 121992863 C T TFCP2L1 Missense_Mutation p.R343Q 0.15 deleterious(0.02) benign(0.023) TCGA-CG-4305-01 2 127826521 127826523 CTT - BIN1 In_Frame_Del p.K166del 0.12 TCGA-CG-4305-01 2 128408876 128408876 C A GPR17 Silent p.A217A 0.24 TCGA-CG-4305-01 2 130900746 130900746 C T CCDC74B Intron 0.25 TCGA-CG-4305-01 2 132240222 132240222 C T TUBA3D Missense_Mutation p.A385V 0.19 tolerated_low_confidence(0.1) possibly_damaging(0.527) TCGA-CG-4305-01 2 132241671 132241671 C - MZT2A Frame_Shift_Del p.G147Afs*? 0.33 TCGA-CG-4305-01 2 136107605 136107605 G A ZRANB3 Silent p.A180A 0.17 TCGA-CG-4305-01 2 136624231 136624231 A - MCM6 Frame_Shift_Del p.L228* 0.22 TCGA-CG-4305-01 2 144966324 144966324 A G GTDC1 Missense_Mutation p.F9L 0.19 deleterious(0) probably_damaging(0.997) TCGA-CG-4305-01 2 152220548 152220548 C T TNFAIP6 Silent p.G62G 0.12 TCGA-CG-4305-01 2 163030235 163030235 T C FAP Missense_Mutation p.K678E 0.19 tolerated(0.3) benign(0.122) TCGA-CG-4305-01 2 163163274 163163274 C A IFIH1 Missense_Mutation p.W238C 0.20 tolerated(0.15) benign(0.001) TCGA-CG-4305-01 2 1653138 1653138 G A PXDN Missense_Mutation p.T805M 0.14 deleterious(0.03) probably_damaging(0.986) TCGA-CG-4305-01 2 166536038 166536038 C T CSRNP3 Silent p.S511S 0.07 TCGA-CG-4305-01 2 166859173 166859173 C A SCN1A Missense_Mutation p.G1365C 0.19 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 2 167055359 167055359 T - SCN9A Frame_Shift_Del p.D1920Ifs*31 0.18 TCGA-CG-4305-01 2 169707788 169707788 G A NOSTRIN Splice_Site p.X301_splice 0.13 TCGA-CG-4305-01 2 171850351 171850351 A G TLK1 Missense_Mutation p.L747P 0.21 tolerated_low_confidence(0.12) benign(0.008) TCGA-CG-4305-01 2 172563056 172563057 - T DYNC1I2 Frame_Shift_Ins p.S78Ffs*2 0.22 TCGA-CG-4305-01 2 176857040 176857040 A G KIAA1715 Missense_Mutation p.L59S 0.25 deleterious(0.02) possibly_damaging(0.556) TCGA-CG-4305-01 2 176947015 176947015 C T EVX2 Missense_Mutation p.R197H 0.17 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 2 176964686 176964686 G A HOXD12 Missense_Mutation p.A53T 0.25 tolerated(0.73) benign(0.001) TCGA-CG-4305-01 2 178982857 178982857 C T RBM45 Nonsense_Mutation p.R167* 0.26 TCGA-CG-4305-01 2 179408762 179408762 A G TTN Missense_Mutation p.S32037P 0.22 TCGA-CG-4305-01 2 179414547 179414547 C A TTN Silent p.G30634G 0.23 TCGA-CG-4305-01 2 179422678 179422678 G A TTN Silent p.L29135L 0.21 TCGA-CG-4305-01 2 179449206 179449206 A G TTN Missense_Mutation p.I21691T 0.22 TCGA-CG-4305-01 2 179463686 179463686 T C TTN Silent p.T18917T 0.31 TCGA-CG-4305-01 2 179489283 179489284 - G TTN Frame_Shift_Ins p.K14908Nfs*6 0.14 TCGA-CG-4305-01 2 179579734 179579734 C G TTN Missense_Mutation p.V8727L 0.16 TCGA-CG-4305-01 2 179632855 179632855 A T TTN Missense_Mutation p.I3064N 0.23 TCGA-CG-4305-01 2 179641015 179641015 C A TTN Missense_Mutation p.R1859M 0.21 TCGA-CG-4305-01 2 180851506 180851507 - G CWC22 Frame_Shift_Ins p.R41Pfs*3 0.13 TCGA-CG-4305-01 2 183387016 183387016 G A PDE1A Missense_Mutation p.R30C 0.23 deleterious_low_confidence(0) possibly_damaging(0.711) TCGA-CG-4305-01 2 185802311 185802311 T A ZNF804A Missense_Mutation p.S730T 0.18 tolerated(0.15) benign(0.004) TCGA-CG-4305-01 2 188225351 188225351 A G CALCRL Missense_Mutation p.L252S 0.14 deleterious(0) probably_damaging(0.998) TCGA-CG-4305-01 2 190554311 190554311 T C ANKAR Silent p.N220N 0.23 TCGA-CG-4305-01 2 190732552 190732552 C T PMS1 Silent p.D790D 0.14 TCGA-CG-4305-01 2 192265122 192265122 G A MYO1B Silent p.L770L 0.14 TCGA-CG-4305-01 2 196664111 196664111 A G DNAH7 Missense_Mutation p.F3421S 0.18 deleterious(0) probably_damaging(0.962) TCGA-CG-4305-01 2 197172692 197172692 T G HECW2 Missense_Mutation p.N851T 0.27 tolerated(0.11) benign(0.044) TCGA-CG-4305-01 2 197664327 197664327 C T GTF3C3 Silent p.G3G 0.26 TCGA-CG-4305-01 2 200789806 200789806 C T C2orf69 Missense_Mutation p.R119C 0.14 tolerated(0.2) benign(0.004) TCGA-CG-4305-01 2 20173395 20173395 C T WDR35 Missense_Mutation p.A271T 0.27 tolerated(0.12) benign(0.176) TCGA-CG-4305-01 2 20175418 20175418 C T WDR35 Missense_Mutation p.R148H 0.22 deleterious(0) possibly_damaging(0.507) TCGA-CG-4305-01 2 202257733 202257733 C A TRAK2 Nonsense_Mutation p.G338* 0.11 TCGA-CG-4305-01 2 203329559 203329559 C T BMPR2 Missense_Mutation p.A35V 0.12 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 2 205989106 205989106 C T PARD3B Silent p.P407P 0.20 TCGA-CG-4305-01 2 20647251 20647251 G C RHOB Missense_Mutation p.V9L 0.20 deleterious(0.01) benign(0.4) TCGA-CG-4305-01 2 207008772 207008772 C A NDUFS1 Missense_Mutation p.W333C 0.20 deleterious(0) probably_damaging(0.994) TCGA-CG-4305-01 2 208477686 208477686 A G METTL21A 3'UTR 0.11 TCGA-CG-4305-01 2 211299158 211299158 T C LANCL1 3'UTR 0.11 TCGA-CG-4305-01 2 211305366 211305366 C T LANCL1 Missense_Mutation p.G216R 0.22 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 2 214204980 214204980 T C SPAG16 Silent p.I210I 0.19 TCGA-CG-4305-01 2 215645975 215645975 T - BARD1 Frame_Shift_Del p.K208Rfs*4 0.20 TCGA-CG-4305-01 2 216257827 216257827 C T FN1 Missense_Mutation p.R1299H 0.17 tolerated(0.12) probably_damaging(0.999) TCGA-CG-4305-01 2 217528681 217528681 G A IGFBP2 Missense_Mutation p.G278R 0.15 deleterious(0.01) probably_damaging(1) TCGA-CG-4305-01 2 218940176 218940176 C T RUFY4 Silent p.L341L 0.12 TCGA-CG-4305-01 2 219268006 219268006 C T CTDSP1 Missense_Mutation p.R175W 0.21 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 2 219508772 219508772 G A ZNF142 Missense_Mutation p.R823W 0.20 deleterious(0) possibly_damaging(0.689) TCGA-CG-4305-01 2 219529040 219529040 G - RNF25 Frame_Shift_Del p.K341Sfs*45 0.09 TCGA-CG-4305-01 2 219529239 219529239 G T RNF25 Missense_Mutation p.P274H 0.22 deleterious(0.01) possibly_damaging(0.759) TCGA-CG-4305-01 2 220348728 220348728 C T SPEG Silent p.P2181P 0.12 TCGA-CG-4305-01 2 223158932 223158932 G A PAX3 Silent p.S180S 0.19 TCGA-CG-4305-01 2 223559161 223559161 G - MOGAT1 Frame_Shift_Del p.G188Vfs*28 0.27 TCGA-CG-4305-01 2 230638845 230638845 C T TRIP12 Missense_Mutation p.V1813I 0.16 deleterious(0.01) probably_damaging(0.989) TCGA-CG-4305-01 2 233350722 233350722 G A ECEL1 Silent p.G214G 0.25 TCGA-CG-4305-01 2 234774827 234774827 C T MSL3P1 RNA 0.22 TCGA-CG-4305-01 2 236957834 236957834 A G AGAP1 Missense_Mutation p.K675E 0.23 tolerated(0.94) benign(0.171) TCGA-CG-4305-01 2 238944574 238944574 G A UBE2F Missense_Mutation p.R167Q 0.14 tolerated(0.18) benign(0.015) TCGA-CG-4305-01 2 241401875 241401875 C T GPC1 Missense_Mutation p.A198V 0.25 tolerated(0.87) benign(0.16) TCGA-CG-4305-01 2 241679772 241679772 C T KIF1A Silent p.P1253P 0.15 TCGA-CG-4305-01 2 242105795 242105795 A G PPP1R7 Missense_Mutation p.N253S 0.30 tolerated(0.13) benign(0.31) TCGA-CG-4305-01 2 242179413 242179413 G A HDLBP Missense_Mutation p.A765V 0.15 deleterious(0.05) benign(0.041) TCGA-CG-4305-01 2 242203935 242203935 C A HDLBP Silent p.L54L 0.18 TCGA-CG-4305-01 2 25966441 25966441 G A ASXL2 Missense_Mutation p.A922V 0.16 tolerated(0.57) benign(0.02) TCGA-CG-4305-01 2 27591927 27591927 G A EIF2B4 Nonsense_Mutation p.Q142* 0.25 TCGA-CG-4305-01 2 27703942 27703942 G C IFT172 Silent p.G252G 0.16 TCGA-CG-4305-01 2 29074131 29074131 A G TRMT61B Silent p.I373I 0.22 TCGA-CG-4305-01 2 29240818 29240818 C A FAM179A Silent p.A452A 0.19 TCGA-CG-4305-01 2 31135133 31135133 C T GALNT14 Missense_Mutation p.A491T 0.20 tolerated(0.16) benign(0.107) TCGA-CG-4305-01 2 31152322 31152322 C A GALNT14 Missense_Mutation p.D369Y 0.12 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 2 31560668 31560668 G A XDH Missense_Mutation p.P1264S 0.11 tolerated(0.17) probably_damaging(0.971) TCGA-CG-4305-01 2 31570415 31570415 G A XDH Silent p.S1083S 0.22 TCGA-CG-4305-01 2 32703728 32703728 C T BIRC6 Missense_Mutation p.T2365M 0.14 probably_damaging(0.996) TCGA-CG-4305-01 2 37208635 37208635 A - HEATR5B Frame_Shift_Del p.*2072N 0.25 TCGA-CG-4305-01 2 38298092 38298092 G A CYP1B1 Missense_Mutation p.R469W 0.21 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 2 39082231 39082231 C - DHX57 Frame_Shift_Del p.V625Wfs*7 0.19 TCGA-CG-4305-01 2 47607055 47607055 A G EPCAM Missense_Mutation p.I269V 0.26 tolerated(0.1) benign(0.395) TCGA-CG-4305-01 2 48925846 48925846 T - LHCGR Frame_Shift_Del p.K258Nfs*16 0.19 TCGA-CG-4305-01 2 53927628 53927628 A G ASB3 Missense_Mutation p.Y375H 0.20 tolerated(0.37) benign(0.092) TCGA-CG-4305-01 2 56603069 56603069 A G CCDC85A Missense_Mutation p.K524R 0.22 deleterious_low_confidence(0.01) probably_damaging(0.98) TCGA-CG-4305-01 2 61343153 61343153 A G KIAA1841 Missense_Mutation p.K595R 0.22 tolerated(0.09) possibly_damaging(0.867) TCGA-CG-4305-01 2 61575028 61575028 G A USP34 Silent p.H754H 0.24 TCGA-CG-4305-01 2 62067454 62067454 G A FAM161A Nonsense_Mutation p.R229* 0.17 TCGA-CG-4305-01 2 69204842 69204842 A C GKN1 Missense_Mutation p.N61T 0.19 deleterious(0.01) possibly_damaging(0.776) TCGA-CG-4305-01 2 70486622 70486622 G - PCYOX1 Frame_Shift_Del p.Q83Kfs*13 0.19 TCGA-CG-4305-01 2 72371250 72371250 C T CYP26B1 Silent p.A99A 0.14 TCGA-CG-4305-01 2 73677405 73677405 C T ALMS1 Nonsense_Mutation p.Q1250* 0.14 TCGA-CG-4305-01 2 73784458 73784458 A G ALMS1 Missense_Mutation p.E3396G 0.13 benign(0.155) TCGA-CG-4305-01 2 74755993 74755993 C - AUP1 Frame_Shift_Del p.E137Sfs*63 0.24 TCGA-CG-4305-01 2 74757166 74757166 C T HTRA2 Silent p.G11G 0.29 TCGA-CG-4305-01 2 84660507 84660507 C T SUCLG1 Silent p.T214T 0.18 TCGA-CG-4305-01 2 86075232 86075232 G A ST3GAL5 Silent p.S138S 0.18 TCGA-CG-4305-01 2 88390622 88390622 A C SMYD1 Missense_Mutation p.D207A 0.20 deleterious(0) possibly_damaging(0.722) TCGA-CG-4305-01 2 9628458 9628458 G A IAH1 Silent p.%3D 0.19 TCGA-CG-4305-01 2 97369018 97369020 AAG - LMAN2L 3'Flank 0.17 TCGA-CG-4305-01 3 10130535 10130535 G A FANCD2 Missense_Mutation p.S1195N 0.25 tolerated(0.92) benign(0.005) TCGA-CG-4305-01 3 105377982 105377982 C T CBLB Silent p.A927A 0.14 TCGA-CG-4305-01 3 111564670 111564670 T C PLCXD2 Intron 0.29 TCGA-CG-4305-01 3 112357154 112357154 T - CCDC80 Frame_Shift_Del p.A534Qfs*21 0.16 TCGA-CG-4305-01 3 114070106 114070106 C T ZBTB20 Silent p.A273A 0.29 TCGA-CG-4305-01 3 119121138 119121138 G A ARHGAP31 Silent p.P513P 0.10 TCGA-CG-4305-01 3 119634950 119634950 T C GSK3B Silent p.K183K 0.19 TCGA-CG-4305-01 3 121575886 121575886 C T EAF2 Missense_Mutation p.R123C 0.11 deleterious(0) possibly_damaging(0.528) TCGA-CG-4305-01 3 121648151 121648151 A T SLC15A2 Silent p.V503V 0.12 TCGA-CG-4305-01 3 121659886 121659886 C A SLC15A2 3'UTR 0.16 TCGA-CG-4305-01 3 121712733 121712733 T C ILDR1 Missense_Mutation p.Y288C 0.12 deleterious(0) possibly_damaging(0.863) TCGA-CG-4305-01 3 123166294 123166294 G A ADCY5 Missense_Mutation p.R367C 0.19 tolerated(0.14) benign(0.014) TCGA-CG-4305-01 3 12434182 12434182 A - PPARG Frame_Shift_Del p.S186Vfs*47 0.23 TCGA-CG-4305-01 3 124689492 124689492 G A HEG1 3'UTR 0.36 TCGA-CG-4305-01 3 125849069 125849069 A T ALDH1L1 Missense_Mutation p.V574D 0.23 deleterious(0) possibly_damaging(0.596) TCGA-CG-4305-01 3 126735391 126735391 C - PLXNA1 Frame_Shift_Del p.Q1019Rfs*22 0.15 TCGA-CG-4305-01 3 127816251 127816251 T C RUVBL1 Missense_Mutation p.E303G 0.16 deleterious(0) probably_damaging(0.997) TCGA-CG-4305-01 3 129211008 129211008 C T IFT122 Nonsense_Mutation p.R724* 0.10 TCGA-CG-4305-01 3 130743090 130743090 G A ASTE1 Missense_Mutation p.P354L 0.15 tolerated(0.28) benign(0.03) TCGA-CG-4305-01 3 132400668 132400668 T - NPHP3 3'UTR 0.19 TCGA-CG-4305-01 3 133320111 133320111 G A TOPBP1 Nonsense_Mutation p.R1518* 0.23 TCGA-CG-4305-01 3 134851684 134851684 C T EPHB1 Missense_Mutation p.R364W 0.11 deleterious(0.02) possibly_damaging(0.773) TCGA-CG-4305-01 3 138664511 138664511 C T FOXL2 Missense_Mutation p.E352K 0.13 deleterious_low_confidence(0) unknown(0) TCGA-CG-4305-01 3 141327450 141327450 T - RASA2 Frame_Shift_Del p.Y714Ifs*7 0.16 TCGA-CG-4305-01 3 141644477 141644477 A - ATP1B3 Frame_Shift_Del p.S260Vfs*49 0.15 TCGA-CG-4305-01 3 142278199 142278199 T - ATR Frame_Shift_Del p.V543Cfs*9 0.10 TCGA-CG-4305-01 3 142681015 142681015 C T PAQR9 3'UTR 0.24 TCGA-CG-4305-01 3 142681359 142681359 A C PAQR9 Missense_Mutation p.F274V 0.09 tolerated(0.2) benign(0.222) TCGA-CG-4305-01 3 142840297 142840297 G - CHST2 Frame_Shift_Del p.A215Qfs*6 0.14 TCGA-CG-4305-01 3 147114002 147114002 C T ZIC4 Missense_Mutation p.A159T 0.20 tolerated(0.1) benign(0.138) TCGA-CG-4305-01 3 150289982 150289982 A G EIF2A Missense_Mutation p.K350R 0.10 tolerated(0.08) benign(0.168) TCGA-CG-4305-01 3 151056290 151056290 A G P2RY12 Missense_Mutation p.L115P 0.28 deleterious(0) probably_damaging(0.998) TCGA-CG-4305-01 3 15288865 15288865 G A CAPN7 Missense_Mutation p.G702E 0.15 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 3 154017707 154017707 G A DHX36 Missense_Mutation p.A490V 0.14 deleterious(0) probably_damaging(0.997) TCGA-CG-4305-01 3 156260972 156260972 G - SSR3 3'UTR 0.17 TCGA-CG-4305-01 3 157840089 157840089 T G RSRC1 Splice_Site p.X65_splice 0.12 TCGA-CG-4305-01 3 160804538 160804538 G A B3GALNT1 Missense_Mutation p.A2V 0.13 tolerated_low_confidence(0.1) benign(0.004) TCGA-CG-4305-01 3 16217107 16217107 C T GALNT15 Missense_Mutation p.T150I 0.12 tolerated(0.09) possibly_damaging(0.47) TCGA-CG-4305-01 3 167217963 167217963 C T WDR49 Silent p.L651L 0.31 TCGA-CG-4305-01 3 169664478 169664478 A G RP11-379K17.4 RNA 0.13 TCGA-CG-4305-01 3 169890471 169890471 G - PHC3 Frame_Shift_Del p.S71Afs*18 0.28 TCGA-CG-4305-01 3 169998141 169998141 C T PRKCI Missense_Mutation p.R278C 0.19 tolerated(0.12) probably_damaging(0.997) TCGA-CG-4305-01 3 170102466 170102467 - A SKIL Frame_Shift_Ins p.T450Nfs*10 0.19 TCGA-CG-4305-01 3 170244713 170244713 A C SLC7A14 Missense_Mutation p.F5V 0.28 tolerated_low_confidence(0.24) benign(0) TCGA-CG-4305-01 3 17202725 17202725 G A TBC1D5 Silent p.C728C 0.16 TCGA-CG-4305-01 3 17255753 17255753 A - TBC1D5 Frame_Shift_Del p.F588Lfs*23 0.16 TCGA-CG-4305-01 3 178546005 178546005 G A KCNMB2 Silent p.A89A 0.14 TCGA-CG-4305-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.21 deleterious(0.02) probably_damaging(0.959) TCGA-CG-4305-01 3 179069813 179069813 T - MFN1 Frame_Shift_Del p.F81Lfs*28 0.15 TCGA-CG-4305-01 3 179474842 179474842 C T USP13 Missense_Mutation p.R642C 0.12 tolerated(0.1) possibly_damaging(0.631) TCGA-CG-4305-01 3 183911390 183911390 G A ABCF3 Nonsense_Mutation p.W678* 0.14 TCGA-CG-4305-01 3 18457551 18457551 C G SATB1 Missense_Mutation p.D155H 0.17 deleterious(0) probably_damaging(0.997) TCGA-CG-4305-01 3 184633161 184633161 C T VPS8 Missense_Mutation p.R761C 0.13 tolerated(0.11) benign(0.059) TCGA-CG-4305-01 3 185200280 185200280 A G MAP3K13 3'UTR 0.16 TCGA-CG-4305-01 3 186360309 186360309 T C FETUB Missense_Mutation p.V129A 0.09 deleterious(0) possibly_damaging(0.501) TCGA-CG-4305-01 3 189526243 189526243 C T TP63 Silent p.T169T 0.12 TCGA-CG-4305-01 3 195022369 195022369 G T ACAP2 Missense_Mutation p.L444I 0.13 deleterious(0) probably_damaging(0.997) TCGA-CG-4305-01 3 195245831 195245831 C T PPP1R2 Silent p.T185T 0.26 TCGA-CG-4305-01 3 195498524 195498524 T C MUC4 Missense_Mutation p.Q4414R 0.19 benign(0.063) TCGA-CG-4305-01 3 195515664 195515664 G A MUC4 Silent p.T929T 0.17 TCGA-CG-4305-01 3 196045039 196045039 T C TCTEX1D2 5'UTR 0.27 TCGA-CG-4305-01 3 196051050 196051050 A G TM4SF19 Intron 0.24 TCGA-CG-4305-01 3 196386812 196386812 G A NRROS Missense_Mutation p.A100T 0.31 tolerated(0.17) benign(0.082) TCGA-CG-4305-01 3 20202590 20202590 G A SGOL1 3'UTR 0.20 TCGA-CG-4305-01 3 33576740 33576740 C T CLASP2 Missense_Mutation p.D1266N 0.18 tolerated(0.11) benign(0.062) TCGA-CG-4305-01 3 37114285 37114286 - T LRRFIP2 Frame_Shift_Ins p.I487Nfs*15 0.17 TCGA-CG-4305-01 3 37114363 37114363 C T LRRFIP2 Missense_Mutation p.R461H 0.17 deleterious(0.02) benign(0.052) TCGA-CG-4305-01 3 38524697 38524697 G A ACVR2B Silent p.A471A 0.21 TCGA-CG-4305-01 3 40085641 40085641 T - MYRIP Frame_Shift_Del p.F71Sfs*43 0.20 TCGA-CG-4305-01 3 42728053 42728053 T C KLHL40 Missense_Mutation p.F315L 0.20 deleterious(0.01) possibly_damaging(0.777) TCGA-CG-4305-01 3 46307386 46307386 C T CCR3 Missense_Mutation p.A267V 0.16 tolerated(0.52) benign(0.001) TCGA-CG-4305-01 3 46490404 46490404 C T LTF Missense_Mutation p.V388M 0.22 deleterious(0.02) possibly_damaging(0.655) TCGA-CG-4305-01 3 46539601 46539601 C T RTP3 Missense_Mutation p.R17W 0.16 deleterious(0.01) possibly_damaging(0.586) TCGA-CG-4305-01 3 46560368 46560368 T - LRRC2 3'UTR 0.32 TCGA-CG-4305-01 3 47951306 47951306 A T MAP4 Intron 0.15 TCGA-CG-4305-01 3 48508192 48508192 C - TREX1 Frame_Shift_Del p.T104Pfs*16 0.25 TCGA-CG-4305-01 3 48508447 48508447 C - TREX1 Frame_Shift_Del p.L188Cfs*27 0.16 TCGA-CG-4305-01 3 48510933 48510933 G T SHISA5 Missense_Mutation p.A157D 0.26 deleterious(0.01) probably_damaging(0.975) TCGA-CG-4305-01 3 48613062 48613062 C A COL7A1 Missense_Mutation p.K1992N 0.18 unknown(0) TCGA-CG-4305-01 3 48699181 48699181 G - CELSR3 Frame_Shift_Del p.P296Rfs*12 0.31 TCGA-CG-4305-01 3 48725986 48725986 A G IP6K2 Missense_Mutation p.I334T 0.19 deleterious(0.01) possibly_damaging(0.857) TCGA-CG-4305-01 3 49569667 49569667 T C DAG1 Missense_Mutation p.Y575H 0.24 deleterious(0) probably_damaging(0.972) TCGA-CG-4305-01 3 50103840 50103840 A G RBM6 Missense_Mutation p.T950A 0.17 deleterious(0.01) probably_damaging(0.997) TCGA-CG-4305-01 3 52003712 52003712 A G ABHD14B Intron 0.23 TCGA-CG-4305-01 3 57614584 57614584 G C DENND6A Missense_Mutation p.T550R 0.17 tolerated(0.1) possibly_damaging(0.621) TCGA-CG-4305-01 3 57627438 57627438 A - DENND6A Frame_Shift_Del p.F358Lfs*14 0.21 TCGA-CG-4305-01 3 57743471 57743471 C T SLMAP Silent p.G31G 0.25 TCGA-CG-4305-01 3 57913085 57913085 C T SLMAP Silent p.Y802Y 0.23 TCGA-CG-4305-01 3 65342204 65342204 C A MAGI1 Missense_Mutation p.R1413L 0.21 deleterious_low_confidence(0.02) unknown(0) TCGA-CG-4305-01 3 65342235 65342235 G A MAGI1 Missense_Mutation p.R1403C 0.21 deleterious_low_confidence(0) unknown(0) TCGA-CG-4305-01 3 65456114 65456114 A G MAGI1 Missense_Mutation p.L268S 0.14 tolerated(0.43) benign(0.287) TCGA-CG-4305-01 3 66434513 66434513 A - LRIG1 Frame_Shift_Del p.F658Sfs*5 0.25 TCGA-CG-4305-01 3 69105035 69105035 G A UBA3 Nonsense_Mutation p.R424* 0.16 TCGA-CG-4305-01 3 71090486 71090486 T C FOXP1 Missense_Mutation p.R290G 0.15 deleterious(0.04) possibly_damaging(0.626) TCGA-CG-4305-01 3 73112168 73112169 - A EBLN2 3'UTR 0.18 TCGA-CG-4305-01 3 7456819 7456819 A - GRM7 Frame_Shift_Del p.E384Kfs*28 0.26 TCGA-CG-4305-01 3 93755579 93755579 C T ARL13B Nonsense_Mutation p.R224* 0.10 TCGA-CG-4305-01 3 96963168 96963168 A G EPHA6 Intron 0.15 TCGA-CG-4305-01 3 9776150 9776150 G A BRPF1 Missense_Mutation p.R109H 0.19 deleterious(0) probably_damaging(0.996) TCGA-CG-4305-01 3 97868368 97868368 G A OR5H14 Missense_Mutation p.A47T 0.25 tolerated(0.22) benign(0.005) TCGA-CG-4305-01 3 98538127 98538128 - T DCBLD2 Frame_Shift_Ins p.P336Tfs*11 0.20 TCGA-CG-4305-01 3 9876804 9876804 C - TTLL3 Frame_Shift_Del p.Q795Sfs*11 0.17 TCGA-CG-4305-01 3 99568814 99568814 T - FILIP1L Frame_Shift_Del p.N569Tfs*3 0.12 TCGA-CG-4305-01 4 110437687 110437687 C T SEC24B Missense_Mutation p.R673C 0.10 deleterious(0) probably_damaging(0.998) TCGA-CG-4305-01 4 110662150 110662151 CA - CFI Frame_Shift_Del p.C550Wfs*17 0.23 TCGA-CG-4305-01 4 110682737 110682737 A G CFI Silent p.F198F 0.18 TCGA-CG-4305-01 4 113539186 113539186 A T C4orf21 Missense_Mutation p.I671N 0.27 tolerated(0.24) benign(0.081) TCGA-CG-4305-01 4 114290799 114290799 A T ANK2 Silent p.T3816T 0.12 TCGA-CG-4305-01 4 114290876 114290876 G T ANK2 Missense_Mutation p.R3842L 0.16 benign(0.313) TCGA-CG-4305-01 4 115997561 115997561 T G NDST4 Missense_Mutation p.E211A 0.18 tolerated(0.57) benign(0.165) TCGA-CG-4305-01 4 1165662 1165663 - G SPON2 Frame_Shift_Ins p.A67Cfs*12 0.23 TCGA-CG-4305-01 4 119951913 119951913 C T SYNPO2 Silent p.Y661Y 0.23 TCGA-CG-4305-01 4 134071388 134071388 C T PCDH10 Silent p.G31G 0.15 TCGA-CG-4305-01 4 15054158 15054158 G A CPEB2 Missense_Mutation p.R774H 0.18 deleterious_low_confidence(0) probably_damaging(1) TCGA-CG-4305-01 4 151504154 151504154 G A MAB21L2 5'UTR 0.12 TCGA-CG-4305-01 4 153245514 153245514 A G FBXW7 Silent p.L559L 0.26 TCGA-CG-4305-01 4 15444376 15444376 G A C1QTNF7 Missense_Mutation p.V282I 0.25 deleterious(0.04) benign(0.281) TCGA-CG-4305-01 4 154649450 154649450 G A RNF175 Missense_Mutation p.R104W 0.19 deleterious(0.01) possibly_damaging(0.908) TCGA-CG-4305-01 4 155163803 155163803 T C DCHS2 Missense_Mutation p.I1900V 0.18 tolerated(0.59) benign(0.1) TCGA-CG-4305-01 4 15529170 15529170 A G CC2D2A Missense_Mutation p.H417R 0.12 deleterious(0) probably_damaging(0.998) TCGA-CG-4305-01 4 155463418 155463418 T C PLRG1 Missense_Mutation p.H203R 0.11 deleterious(0) probably_damaging(0.999) TCGA-CG-4305-01 4 15780178 15780178 C T CD38 Silent p.R47R 0.26 TCGA-CG-4305-01 4 15826541 15826541 A G CD38 Missense_Mutation p.Q134R 0.18 tolerated(0.58) benign(0.07) TCGA-CG-4305-01 4 165961252 165961252 C A TRIM60 Missense_Mutation p.L10I 0.19 deleterious(0.04) probably_damaging(0.991) TCGA-CG-4305-01 4 177649058 177649058 C T VEGFC Silent p.K142K 0.20 TCGA-CG-4305-01 4 183574966 183574966 A C TENM3 Missense_Mutation p.E344A 0.27 deleterious(0.02) benign(0.292) TCGA-CG-4305-01 4 184931564 184931564 C A STOX2 Missense_Mutation p.Q525K 0.18 tolerated(0.09) benign(0.114) TCGA-CG-4305-01 4 188924640 188924640 G A ZFP42 Missense_Mutation p.V227I 0.21 tolerated(0.24) benign(0) TCGA-CG-4305-01 4 189012969 189012969 G A TRIML2 Missense_Mutation p.A241V 0.21 deleterious(0.02) probably_damaging(0.999) TCGA-CG-4305-01 4 189060814 189060814 C T TRIML1 Silent p.S34S 0.16 TCGA-CG-4305-01 4 20487859 20487859 G A SLIT2 Silent p.V192V 0.13 TCGA-CG-4305-01 4 24541861 24541861 A G DHX15 Silent p.D552D 0.22 TCGA-CG-4305-01 4 24556348 24556348 C A DHX15 Missense_Mutation p.E360D 0.16 tolerated(0.12) benign(0.084) TCGA-CG-4305-01 4 25823650 25823650 A G SEL1L3 Missense_Mutation p.Y420H 0.11 deleterious(0) probably_damaging(0.966) TCGA-CG-4305-01 4 26675418 26675418 G A TBC1D19 Missense_Mutation p.A242T 0.29 tolerated(0.06) benign(0.075) TCGA-CG-4305-01 4 2944054 2944054 C A NOP14 Missense_Mutation p.R639I 0.22 deleterious(0) probably_damaging(0.962) TCGA-CG-4305-01 4 36081901 36081901 C T ARAP2 Nonsense_Mutation p.W1515* 0.12 TCGA-CG-4305-01 4 39409119 39409119 C T KLB Missense_Mutation p.L184F 0.25 tolerated(0.05) possibly_damaging(0.481) TCGA-CG-4305-01 4 40122019 40122019 C T N4BP2 Missense_Mutation p.T763M 0.22 deleterious(0.04) benign(0.005) TCGA-CG-4305-01 4 41678464 41678464 G A LIMCH1 Silent p.Q784Q 0.12 TCGA-CG-4305-01 4 4190572 4190572 C G OTOP1 Missense_Mutation p.M599I 0.23 deleterious(0.01) probably_damaging(0.943) TCGA-CG-4305-01 4 48859372 48859372 A - OCIAD1 Frame_Shift_Del p.E233Kfs*4 0.21 TCGA-CG-4305-01 4 515569 515569 G A PIGG Missense_Mutation p.A485T 0.19 tolerated(0.08) probably_damaging(0.94) TCGA-CG-4305-01 4 5461854 5461854 C T STK32B Missense_Mutation p.R270C 0.23 deleterious(0) probably_damaging(0.984) TCGA-CG-4305-01 4 55133804 55133804 G A PDGFRA Silent p.V339V 0.13 TCGA-CG-4305-01 4 56277913 56277913 T - TMEM165 Frame_Shift_Del p.F115Lfs*2 0.30 TCGA-CG-4305-01 4 57179385 57179385 G A KIAA1211 Missense_Mutation p.R126Q 0.20 deleterious(0) probably_damaging(0.988) TCGA-CG-4305-01 4 6107525 6107525 G A JAKMIP1 Missense_Mutation p.A100V 0.40 tolerated(0.89) possibly_damaging(0.642) TCGA-CG-4305-01 4 62453059 62453059 A C LPHN3 Missense_Mutation p.N57T 0.29 deleterious(0) probably_damaging(0.998) TCGA-CG-4305-01 4 66197602 66197602 A C EPHA5 Intron 0.18 TCGA-CG-4305-01 4 66233108 66233108 C A EPHA5 Nonsense_Mutation p.E631* 0.17 TCGA-CG-4305-01 4 6863563 6863563 G T KIAA0232 Missense_Mutation p.G485V 0.21 deleterious(0) probably_damaging(0.968) TCGA-CG-4305-01 4 69182138 69182138 G A YTHDC1 Missense_Mutation p.P618L 0.16 deleterious(0) possibly_damaging(0.533) TCGA-CG-4305-01 4 73184391 73184391 A - ADAMTS3 Frame_Shift_Del p.F461Lfs*200 0.17 TCGA-CG-4305-01 4 74853866 74853866 C A PPBP 5'UTR 0.15 TCGA-CG-4305-01 4 77053839 77053839 C T NUP54 Silent p.S248S 0.21 TCGA-CG-4305-01 4 79400860 79400860 A C FRAS1 Missense_Mutation p.S2811R 0.08 possibly_damaging(0.557) TCGA-CG-4305-01 4 8229894 8229894 G A SH3TC1 Missense_Mutation p.V825M 0.14 deleterious(0.03) possibly_damaging(0.686) TCGA-CG-4305-01 4 83748700 83748700 T C SEC31A Missense_Mutation p.Q1038R 0.20 tolerated(0.16) benign(0.266) TCGA-CG-4305-01 4 8582915 8582915 G A GPR78 Missense_Mutation p.R69H 0.15 tolerated(0.56) benign(0.009) TCGA-CG-4305-01 4 88583609 88583610 - G DMP1 Frame_Shift_Ins p.N229Kfs*19 0.25 TCGA-CG-4305-01 4 88766899 88766899 T C MEPE Silent p.S293S 0.20 TCGA-CG-4305-01 4 89380524 89380524 A G HERC5 Missense_Mutation p.K98E 0.21 tolerated(0.3) benign(0.251) TCGA-CG-4305-01 4 9784426 9784426 G T DRD5 Missense_Mutation p.R258M 0.11 deleterious(0.03) probably_damaging(1) TCGA-CG-4305-01 4 9922008 9922008 C G SLC2A9 Splice_Site p.X334_splice 0.16 TCGA-CG-4305-01 4 99363141 99363141 A C RAP1GDS1 Missense_Mutation p.E567A 0.22 tolerated(0.25) benign(0.06) TCGA-CG-4305-01 5 101735414 101735414 T A SLCO6A1 Silent p.G553G 0.31 TCGA-CG-4305-01 5 106716966 106716966 A - EFNA5 Frame_Shift_Del p.L226* 0.23 TCGA-CG-4305-01 5 110440035 110440035 C A WDR36 Missense_Mutation p.A353D 0.12 tolerated(0.06) possibly_damaging(0.835) TCGA-CG-4305-01 5 111570349 111570349 C A EPB41L4A Missense_Mutation p.A357S 0.20 tolerated(0.42) benign(0.011) TCGA-CG-4305-01 5 112363035 112363037 CTC - MCC In_Frame_Del p.E1008del 0.23 TCGA-CG-4305-01 5 112364690 112364690 G A MCC Silent p.S940S 0.14 TCGA-CG-4305-01 5 112902884 112902884 T C YTHDC2 Missense_Mutation p.Y980H 0.13 deleterious(0.04) probably_damaging(0.994) TCGA-CG-4305-01 5 115152118 115152118 G A CDO1 5'UTR 0.11 TCGA-CG-4305-01 5 118788199 118788199 G T HSD17B4 5'Flank 0.20 TCGA-CG-4305-01 5 132648366 132648366 C T FSTL4 Missense_Mutation p.R236H 0.17 tolerated(0.52) benign(0.001) TCGA-CG-4305-01 5 137729022 137729022 A G KDM3B Missense_Mutation p.D931G 0.19 tolerated(0.06) benign(0.074) TCGA-CG-4305-01 5 137802740 137802740 C A EGR1 Missense_Mutation p.P201H 0.23 tolerated(0.19) probably_damaging(0.971) TCGA-CG-4305-01 5 13841161 13841161 T - DNAH5 Frame_Shift_Del p.I1855Sfs*16 0.23 TCGA-CG-4305-01 5 140187861 140187861 T C PCDHA4 Silent p.A363A 0.17 TCGA-CG-4305-01 5 140228550 140228550 C T PCDHA9 Missense_Mutation p.A157V 0.19 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-CG-4305-01 5 140237067 140237067 G A PCDHA10 Silent p.A478A 0.17 TCGA-CG-4305-01 5 140250883 140250883 C T PCDHA11 Missense_Mutation p.A732V 0.22 tolerated_low_confidence(0.06) benign(0.004) TCGA-CG-4305-01 5 140531449 140531449 G A PCDHB6 Silent p.P537P 0.20 TCGA-CG-4305-01 5 140594940 140594940 G A PCDHB13 Silent p.A415A 0.26 TCGA-CG-4305-01 5 140725583 140725583 C T PCDHGA3 Silent p.T661T 0.13 TCGA-CG-4305-01 5 140731723 140731723 C T PCDHGB1 Silent p.D632D 0.12 TCGA-CG-4305-01 5 140739873 140739873 C T PCDHGB2 Silent p.S57S 0.22 TCGA-CG-4305-01 5 140769248 140769248 C T PCDHGB4 Silent p.N599N 0.17 TCGA-CG-4305-01 5 140772597 140772597 C T PCDHGA8 Nonsense_Mutation p.Q73* 0.19 TCGA-CG-4305-01 5 140812558 140812558 C T PCDHGA12 Silent p.D744D 0.21 TCGA-CG-4305-01 5 141028998 141028998 A G FCHSD1 Silent p.G113G 0.16 TCGA-CG-4305-01 5 141233894 141233894 G T PCDH1 Missense_Mutation p.R1143S 0.24 tolerated(0.13) possibly_damaging(0.653) TCGA-CG-4305-01 5 141312947 141312947 C - KIAA0141 Frame_Shift_Del p.R295Gfs*48 0.19 TCGA-CG-4305-01 5 141699343 141699343 C T SPRY4 5'UTR 0.24 TCGA-CG-4305-01 5 14363893 14363893 A G TRIO Missense_Mutation p.D815G 0.15 possibly_damaging(0.733) TCGA-CG-4305-01 5 145883505 145883506 GA - TCERG1 Frame_Shift_Del p.E892Afs*17 0.16 TCGA-CG-4305-01 5 147499622 147499622 C T SPINK5 Silent p.C788C 0.19 TCGA-CG-4305-01 5 148747916 148747916 G A PCYOX1L Missense_Mutation p.R395Q 0.16 deleterious(0) possibly_damaging(0.859) TCGA-CG-4305-01 5 149314176 149314176 C T PDE6A Missense_Mutation p.A194T 0.27 deleterious(0.04) probably_damaging(0.991) TCGA-CG-4305-01 5 150682787 150682787 C T SLC36A3 Splice_Site p.X43_splice 0.22 TCGA-CG-4305-01 5 150886847 150886847 C T FAT2 Missense_Mutation p.V4129I 0.26 benign(0.004) TCGA-CG-4305-01 5 150887067 150887067 G A FAT2 Silent p.A4055A 0.17 TCGA-CG-4305-01 5 156608073 156608073 C T ITK Missense_Mutation p.R29C 0.25 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 5 157078490 157078490 C T SOX30 Silent p.G199G 0.19 TCGA-CG-4305-01 5 158588398 158588398 C T RNF145 Missense_Mutation p.R531Q 0.20 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 5 159661892 159661892 G T FABP6 Missense_Mutation p.E152D 0.17 deleterious(0) probably_damaging(0.995) TCGA-CG-4305-01 5 170232795 170232795 G A GABRP Missense_Mutation p.R206Q 0.14 tolerated(0.43) possibly_damaging(0.524) TCGA-CG-4305-01 5 176940713 176940713 G A DDX41 Silent p.D357D 0.18 TCGA-CG-4305-01 5 178410138 178410138 G T GRM6 Missense_Mutation p.Q737K 0.18 tolerated(1) benign(0.01) TCGA-CG-4305-01 5 178415995 178415995 G A GRM6 Missense_Mutation p.A432V 0.25 tolerated(0.22) benign(0.42) TCGA-CG-4305-01 5 180047711 180047711 G A FLT4 Silent p.S768S 0.19 TCGA-CG-4305-01 5 180626983 180626983 C A TRIM7 Missense_Mutation p.E239D 0.21 tolerated(0.11) benign(0.045) TCGA-CG-4305-01 5 182314 182314 G A PLEKHG4B Nonsense_Mutation p.W1231* 0.24 TCGA-CG-4305-01 5 21752243 21752243 T C CDH12 Missense_Mutation p.E663G 0.24 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 5 21755909 21755909 C T CDH12 Missense_Mutation p.R559H 0.16 tolerated(0.06) possibly_damaging(0.829) TCGA-CG-4305-01 5 31318066 31318066 G T CDH6 Intron 0.20 TCGA-CG-4305-01 5 32712163 32712163 C A NPR3 Missense_Mutation p.P94Q 0.14 deleterious(0.05) benign(0.281) TCGA-CG-4305-01 5 34937566 34937566 C T DNAJC21 Missense_Mutation p.R192W 0.22 deleterious(0) probably_damaging(0.995) TCGA-CG-4305-01 5 35954433 35954433 A G UGT3A1 Silent p.H481H 0.18 TCGA-CG-4305-01 5 35991385 35991385 G A UGT3A1 5'UTR 0.21 TCGA-CG-4305-01 5 36066904 36066904 G A UGT3A2 5'UTR 0.19 TCGA-CG-4305-01 5 37022159 37022159 C T NIPBL Nonsense_Mutation p.R1779* 0.20 TCGA-CG-4305-01 5 37309279 37309279 T - NUP155 Frame_Shift_Del p.I907Lfs*17 0.14 TCGA-CG-4305-01 5 5303684 5303684 G A ADAMTS16 Splice_Site p.X998_splice 0.13 TCGA-CG-4305-01 5 54586064 54586064 T - DHX29 Frame_Shift_Del p.I297* 0.19 TCGA-CG-4305-01 5 5469044 5469044 G A KIAA0947 Silent p.R2055R 0.22 TCGA-CG-4305-01 5 6746416 6746416 T C PAPD7 Silent p.N195N 0.16 TCGA-CG-4305-01 5 76250013 76250013 T C CRHBP Splice_Site p.X111_splice 0.29 TCGA-CG-4305-01 5 78981033 78981033 A T PAPD4 Missense_Mutation p.R464S 0.24 tolerated(0.19) benign(0.05) TCGA-CG-4305-01 5 86629108 86629108 C T RASA1 Nonsense_Mutation p.R285* 0.24 TCGA-CG-4305-01 5 96430680 96430680 G T LIX1 Silent p.A207A 0.22 TCGA-CG-4305-01 5 98206409 98206409 T - CHD1 Frame_Shift_Del p.E1321Kfs*22 0.17 TCGA-CG-4305-01 6 10411852 10411852 A T TFAP2A Intron 0.23 TCGA-CG-4305-01 6 10430484 10430484 C T LINC00518 RNA 0.21 TCGA-CG-4305-01 6 105577343 105577343 G A BVES Nonsense_Mutation p.R88* 0.18 TCGA-CG-4305-01 6 10903158 10903158 A - SYCP2L Frame_Shift_Del p.K203Nfs*12 0.22 TCGA-CG-4305-01 6 109285402 109285402 G A ARMC2 Silent p.A724A 0.18 TCGA-CG-4305-01 6 109786948 109786948 G A ZBTB24 3'UTR 0.25 TCGA-CG-4305-01 6 109787338 109787338 T C ZBTB24 Missense_Mutation p.N604D 0.18 tolerated(0.07) benign(0.016) TCGA-CG-4305-01 6 109815261 109815261 G A AK9 Missense_Mutation p.A1819V 0.10 tolerated(1) benign(0.043) TCGA-CG-4305-01 6 111689016 111689017 - T REV3L Frame_Shift_Ins p.I1992Nfs*33 0.20 TCGA-CG-4305-01 6 116747964 116747964 C T DSE Missense_Mutation p.T215M 0.14 deleterious(0.01) possibly_damaging(0.752) TCGA-CG-4305-01 6 116938281 116938281 C T RSPH4A Silent p.D165D 0.19 TCGA-CG-4305-01 6 123102370 123102371 - T FABP7 Intron 0.18 TCGA-CG-4305-01 6 126080953 126080953 T G HEY2 3'UTR 0.15 TCGA-CG-4305-01 6 126210800 126210800 C A NCOA7 Missense_Mutation p.P534T 0.20 tolerated_low_confidence(0.88) benign(0.002) TCGA-CG-4305-01 6 126319758 126319758 T G TRMT11 Silent p.S150S 0.22 TCGA-CG-4305-01 6 127797085 127797085 C T SOGA3 Missense_Mutation p.A696T 0.17 tolerated(0.16) benign(0.302) TCGA-CG-4305-01 6 131929128 131929129 - T MED23 Frame_Shift_Ins p.N387Kfs*5 0.20 TCGA-CG-4305-01 6 13228109 13228109 G - PHACTR1 Frame_Shift_Del p.V351Sfs*12 0.22 TCGA-CG-4305-01 6 132645229 132645229 T C MOXD1 Missense_Mutation p.I318M 0.13 tolerated(0.11) possibly_damaging(0.707) TCGA-CG-4305-01 6 13321315 13321315 G T TBC1D7 Missense_Mutation p.P69Q 0.14 tolerated(0.11) benign(0.171) TCGA-CG-4305-01 6 136582495 136582495 G A BCLAF1 Missense_Mutation p.H889Y 0.11 deleterious(0.02) benign(0.291) TCGA-CG-4305-01 6 137243812 137243812 G A SLC35D3 Silent p.A82A 0.25 TCGA-CG-4305-01 6 143605337 143605337 A G AIG1 Missense_Mutation p.T164A 0.21 tolerated(0.55) benign(0.001) TCGA-CG-4305-01 6 147612300 147612300 T C STXBP5 Silent p.T303T 0.20 TCGA-CG-4305-01 6 151130286 151130286 A G PLEKHG1 Missense_Mutation p.S320G 0.14 tolerated(0.45) benign(0.082) TCGA-CG-4305-01 6 151936775 151936775 A - CCDC170 Frame_Shift_Del p.K638Nfs*24 0.24 TCGA-CG-4305-01 6 152570298 152570298 C G SYNE1 Missense_Mutation p.E6524Q 0.18 benign(0.002) TCGA-CG-4305-01 6 152765568 152765568 T G SYNE1 Missense_Mutation p.Q1272P 0.17 probably_damaging(0.995) TCGA-CG-4305-01 6 1611203 1611205 AAG - FOXC1 In_Frame_Del p.K177del 0.19 TCGA-CG-4305-01 6 161969941 161969941 G A PARK2 Missense_Mutation p.P343L 0.18 deleterious(0.04) probably_damaging(0.997) TCGA-CG-4305-01 6 165832261 165832261 T C PDE10A Missense_Mutation p.Y287C 0.17 deleterious(0) possibly_damaging(0.9) TCGA-CG-4305-01 6 17283113 17283113 C T RBM24 Silent p.N82N 0.16 TCGA-CG-4305-01 6 17826300 17826300 G A KIF13A Nonsense_Mutation p.R530* 0.22 TCGA-CG-4305-01 6 20151475 20151475 A - MBOAT1 Frame_Shift_Del p.F88Lfs*5 0.23 TCGA-CG-4305-01 6 24175061 24175061 G T DCDC2 Missense_Mutation p.A443D 0.23 tolerated_low_confidence(0.28) benign(0.002) TCGA-CG-4305-01 6 24601407 24601407 T - KIAA0319 5'UTR 0.19 TCGA-CG-4305-01 6 25540216 25540216 G A LRRC16A Silent p.A746A 0.22 TCGA-CG-4305-01 6 25913516 25913516 A G SLC17A2 3'UTR 0.26 TCGA-CG-4305-01 6 26043776 26043776 C A HIST1H2BB Missense_Mutation p.S37I 0.14 deleterious_low_confidence(0) probably_damaging(0.963) TCGA-CG-4305-01 6 26158833 26158833 G A HIST1H2BD Intron 0.15 TCGA-CG-4305-01 6 26468202 26468202 G A BTN2A1 Missense_Mutation p.A337T 0.16 deleterious(0.02) benign(0.364) TCGA-CG-4305-01 6 28212908 28212908 T - ZKSCAN4 Frame_Shift_Del p.T542Lfs*27 0.17 TCGA-CG-4305-01 6 28269790 28269790 T A PGBD1 Missense_Mutation p.I720N 0.23 tolerated(0.32) benign(0.361) TCGA-CG-4305-01 6 28541299 28541299 T C SCAND3 Silent p.S789S 0.22 TCGA-CG-4305-01 6 28872041 28872043 AGA - TRIM27 In_Frame_Del p.F449del 0.22 TCGA-CG-4305-01 6 29054462 29054462 T C OR2B3 Silent p.S188S 0.20 TCGA-CG-4305-01 6 29455673 29455673 A G MAS1L Missense_Mutation p.W3R 0.17 unknown(0) TCGA-CG-4305-01 6 29641061 29641061 C T ZFP57 Missense_Mutation p.R276H 0.16 deleterious(0) probably_damaging(0.998) TCGA-CG-4305-01 6 29795994 29795994 G A HLA-G Missense_Mutation p.E82K 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.595) TCGA-CG-4305-01 6 30671881 30671881 C T MDC1 Silent p.P1693P 0.19 TCGA-CG-4305-01 6 30890973 30890973 T C VARS2 Silent p.L790L 0.20 TCGA-CG-4305-01 6 31513913 31513913 C A ATP6V1G2 Missense_Mutation p.E52D 0.17 tolerated(0.16) benign(0.374) TCGA-CG-4305-01 6 31734033 31734033 G - VWA7 Frame_Shift_Del p.N772Tfs*9 0.21 TCGA-CG-4305-01 6 31855364 31855364 G A EHMT2 Silent p.I667I 0.14 TCGA-CG-4305-01 6 31939846 31939846 G - STK19 Frame_Shift_Del p.G26Efs*3 0.22 TCGA-CG-4305-01 6 31994882 31994882 C T C4B Silent p.L859L 0.11 TCGA-CG-4305-01 6 32138945 32138945 G C AGPAT1 Intron 0.17 TCGA-CG-4305-01 6 32164828 32164828 T C NOTCH4 Missense_Mutation p.T1692A 0.13 deleterious(0) probably_damaging(0.998) TCGA-CG-4305-01 6 32260745 32260745 A - C6orf10 3'UTR 0.15 TCGA-CG-4305-01 6 32410443 32410443 C T HLA-DRA Missense_Mutation p.R101C 0.21 deleterious(0.02) benign(0.091) TCGA-CG-4305-01 6 32943277 32943277 C T BRD2 Silent p.T150T 0.18 TCGA-CG-4305-01 6 33255222 33255222 G A WDR46 Silent p.D263D 0.27 TCGA-CG-4305-01 6 33263528 33263528 A - RGL2 Frame_Shift_Del p.L260Sfs*3 0.23 TCGA-CG-4305-01 6 33380026 33380026 C - PHF1 Intron 0.30 TCGA-CG-4305-01 6 33383747 33383747 G - PHF1 Frame_Shift_Del p.G527Efs*104 0.17 TCGA-CG-4305-01 6 33658716 33658716 A G ITPR3 Missense_Mutation p.E2352G 0.19 deleterious(0) probably_damaging(0.963) TCGA-CG-4305-01 6 35825051 35825051 C T SRPK1 Missense_Mutation p.S536N 0.13 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 6 37139205 37139205 T C PIM1 Missense_Mutation p.L182P 0.14 deleterious(0) probably_damaging(0.998) TCGA-CG-4305-01 6 37445388 37445388 T C CMTR1 Missense_Mutation p.L709P 0.17 deleterious(0) probably_damaging(0.987) TCGA-CG-4305-01 6 39041530 39041530 G A GLP1R Missense_Mutation p.V270M 0.17 deleterious(0.03) benign(0.44) TCGA-CG-4305-01 6 41533642 41533642 G A FOXP4 Silent p.T48T 0.16 TCGA-CG-4305-01 6 41753259 41753259 G A PRICKLE4 Missense_Mutation p.R188H 0.08 deleterious(0.01) probably_damaging(1) TCGA-CG-4305-01 6 42231260 42231260 G A TRERF1 Missense_Mutation p.P561L 0.29 tolerated_low_confidence(0.24) possibly_damaging(0.726) TCGA-CG-4305-01 6 42930849 42930849 C T GNMT Missense_Mutation p.A164V 0.20 tolerated(0.52) benign(0.02) TCGA-CG-4305-01 6 43266034 43266034 G A SLC22A7 5'UTR 0.18 TCGA-CG-4305-01 6 43271811 43271811 G A SLC22A7 Missense_Mutation p.R474Q 0.14 tolerated(0.05) possibly_damaging(0.474) TCGA-CG-4305-01 6 47563667 47563667 T C CD2AP Silent p.T393T 0.18 TCGA-CG-4305-01 6 55300543 55300543 C T HMGCLL1 Missense_Mutation p.V344M 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-CG-4305-01 6 55620338 55620338 C A BMP5 Missense_Mutation p.C453F 0.24 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 6 56506814 56506814 C T DST Missense_Mutation p.R116H 0.24 benign(0.043) TCGA-CG-4305-01 6 6318878 6318878 G A F13A1 Missense_Mutation p.T7I 0.19 tolerated_low_confidence(0.08) benign(0.026) TCGA-CG-4305-01 6 64422545 64422545 C T PHF3 Silent p.N1687N 0.24 TCGA-CG-4305-01 6 66205020 66205020 G A EYS Missense_Mutation p.S95F 0.18 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-CG-4305-01 6 7240812 7240812 A G RREB1 Missense_Mutation p.D1317G 0.20 deleterious(0.02) benign(0.02) TCGA-CG-4305-01 6 73023285 73023285 T - RIMS1 Frame_Shift_Del p.S1348Pfs*49 0.26 TCGA-CG-4305-01 6 74171522 74171523 - T MTO1 5'UTR 0.22 TCGA-CG-4305-01 6 7585229 7585229 C T DSP Silent p.S2578S 0.23 TCGA-CG-4305-01 6 75893741 75893741 C T COL12A1 Missense_Mutation p.A373T 0.15 benign(0.003) TCGA-CG-4305-01 6 76540214 76540214 T C MYO6 Missense_Mutation p.Y115H 0.24 deleterious(0) unknown(0) TCGA-CG-4305-01 6 76660365 76660365 G A IMPG1 Missense_Mutation p.R580C 0.31 deleterious(0) probably_damaging(0.996) TCGA-CG-4305-01 6 85446535 85446535 C T TBX18 Silent p.T564T 0.18 TCGA-CG-4305-01 6 90402760 90402760 A T MDN1 Missense_Mutation p.I3330N 0.24 benign(0.418) TCGA-CG-4305-01 6 96651915 96651915 C A FUT9 Missense_Mutation p.P295H 0.16 deleterious(0) probably_damaging(0.954) TCGA-CG-4305-01 6 97562222 97562222 G A KLHL32 Silent p.E397E 0.15 TCGA-CG-4305-01 6 99283635 99283635 G A POU3F2 Missense_Mutation p.G296S 0.15 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 7 100160278 100160278 G A AGFG2 Missense_Mutation p.G354S 0.14 tolerated(0.96) benign(0.012) TCGA-CG-4305-01 7 100204175 100204175 C T PCOLCE Missense_Mutation p.R288W 0.18 deleterious(0.01) benign(0.019) TCGA-CG-4305-01 7 100459447 100459447 G A SLC12A9 Missense_Mutation p.R542Q 0.24 deleterious(0) probably_damaging(0.982) TCGA-CG-4305-01 7 100685976 100685976 T A MUC17 Missense_Mutation p.V3760D 0.16 benign(0.083) TCGA-CG-4305-01 7 100958511 100958511 A G RABL5 Silent p.P154P 0.18 TCGA-CG-4305-01 7 103835622 103835622 C T ORC5 Silent p.P174P 0.07 TCGA-CG-4305-01 7 107564774 107564774 T - LAMB1 Frame_Shift_Del p.T1709Lfs*22 0.17 TCGA-CG-4305-01 7 111517184 111517184 T C DOCK4 Missense_Mutation p.K549R 0.22 deleterious(0.03) possibly_damaging(0.679) TCGA-CG-4305-01 7 114563029 114563029 C T MDFIC Missense_Mutation p.R90C 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.835) TCGA-CG-4305-01 7 119915437 119915437 G T KCND2 Missense_Mutation p.A251S 0.19 tolerated(0.1) possibly_damaging(0.859) TCGA-CG-4305-01 7 121637988 121637988 G T PTPRZ1 Missense_Mutation p.A390S 0.17 deleterious(0) probably_damaging(0.999) TCGA-CG-4305-01 7 122809297 122809297 G A SLC13A1 Missense_Mutation p.A153V 0.15 deleterious(0.01) possibly_damaging(0.702) TCGA-CG-4305-01 7 123599661 123599661 A - SPAM1 Frame_Shift_Del p.N391Tfs*51 0.10 TCGA-CG-4305-01 7 124404490 124404490 A - GPR37 Frame_Shift_Del p.Y181Tfs*65 0.22 TCGA-CG-4305-01 7 126173175 126173175 C T GRM8 Missense_Mutation p.G754E 0.12 tolerated(0.19) probably_damaging(1) TCGA-CG-4305-01 7 127014068 127014068 T - ZNF800 Frame_Shift_Del p.K441Rfs*61 0.21 TCGA-CG-4305-01 7 128142107 128142107 C A METTL2B 3'UTR 0.19 TCGA-CG-4305-01 7 128582176 128582176 G A IRF5 Missense_Mutation p.R14H 0.13 deleterious(0) probably_damaging(0.969) TCGA-CG-4305-01 7 128849174 128849174 A G SMO Missense_Mutation p.S468G 0.25 tolerated(1) benign(0.002) TCGA-CG-4305-01 7 129479104 129479104 C T UBE2H Missense_Mutation p.G124S 0.15 tolerated(0.13) benign(0.32) TCGA-CG-4305-01 7 133168945 133168945 A - EXOC4 Intron 0.16 TCGA-CG-4305-01 7 136938377 136938377 T - PTN Frame_Shift_Del p.V42* 0.16 TCGA-CG-4305-01 7 138189060 138189060 C T TRIM24 Silent p.C130C 0.19 TCGA-CG-4305-01 7 138944044 138944044 T C UBN2 Missense_Mutation p.M278T 0.14 tolerated(0.12) benign(0.004) TCGA-CG-4305-01 7 139791763 139791763 A G KDM7A Missense_Mutation p.Y858H 0.13 tolerated(0.47) benign(0.008) TCGA-CG-4305-01 7 142571315 142571315 G T TRPV6 Silent p.T558T 0.16 TCGA-CG-4305-01 7 142643391 142643391 C T KEL Missense_Mutation p.R406Q 0.18 deleterious(0.01) probably_damaging(0.924) TCGA-CG-4305-01 7 143013437 143013437 C - CLCN1 Frame_Shift_Del p.H44Qfs*33 0.15 TCGA-CG-4305-01 7 143095949 143095949 G A EPHA1 Missense_Mutation p.R361C 0.09 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 7 146818164 146818164 G A CNTNAP2 Missense_Mutation p.R283H 0.15 tolerated(0.2) benign(0.413) TCGA-CG-4305-01 7 148507454 148507454 A G EZH2 Missense_Mutation p.M667T 0.10 deleterious(0.02) possibly_damaging(0.675) TCGA-CG-4305-01 7 149174108 149174108 G A ZNF746 Missense_Mutation p.P248L 0.26 tolerated(0.11) benign(0.049) TCGA-CG-4305-01 7 149191572 149191572 G A ZNF746 Missense_Mutation p.A16V 0.18 deleterious(0.04) possibly_damaging(0.875) TCGA-CG-4305-01 7 149509375 149509375 G - SSPO RNA 0.24 TCGA-CG-4305-01 7 149547315 149547315 C T ZNF862 Silent p.F335F 0.27 TCGA-CG-4305-01 7 150034580 150034580 C T LRRC61 Silent p.S210S 0.31 TCGA-CG-4305-01 7 150554121 150554121 C - AOC1 Frame_Shift_Del p.R190Gfs*18 0.30 TCGA-CG-4305-01 7 150656686 150656686 C G KCNH2 Missense_Mutation p.G149A 0.19 tolerated(0.77) benign(0.001) TCGA-CG-4305-01 7 151860314 151860314 G A KMT2C Nonsense_Mutation p.Q3450* 0.19 TCGA-CG-4305-01 7 154684482 154684482 A T DPP6 3'UTR 0.13 TCGA-CG-4305-01 7 158445158 158445158 A - NCAPG2 Frame_Shift_Del p.Y921Mfs*9 0.17 TCGA-CG-4305-01 7 21939669 21939669 A - DNAH11 Frame_Shift_Del p.T4421Qfs*72 0.14 TCGA-CG-4305-01 7 2255914 2255914 C T MAD1L1 Silent p.E229E 0.12 TCGA-CG-4305-01 7 23826129 23826129 C A STK31 Silent p.G759G 0.14 TCGA-CG-4305-01 7 24849497 24849497 C T OSBPL3 Missense_Mutation p.R749Q 0.21 deleterious(0) benign(0.389) TCGA-CG-4305-01 7 25264656 25264656 T C NPVF 3'UTR 0.18 TCGA-CG-4305-01 7 27140704 27140705 GA - HOXA2 Frame_Shift_Del p.Q258Afs*23 0.24 TCGA-CG-4305-01 7 2946234 2946234 C T CARD11 3'UTR 0.16 TCGA-CG-4305-01 7 30496526 30496526 C A NOD1 Missense_Mutation p.Q4H 0.10 tolerated(0.13) benign(0.002) TCGA-CG-4305-01 7 31378635 31378635 T - NEUROD6 Frame_Shift_Del p.K83Rfs*35 0.19 TCGA-CG-4305-01 7 31735141 31735141 A - PPP1R17 Frame_Shift_Del p.N49Mfs*6 0.17 TCGA-CG-4305-01 7 32209465 32209466 - G PDE1C Frame_Shift_Ins p.E81Rfs*6 0.17 TCGA-CG-4305-01 7 4188999 4188999 G A SDK1 Missense_Mutation p.R1510Q 0.28 deleterious(0.05) probably_damaging(1) TCGA-CG-4305-01 7 4215451 4215451 A C SDK1 Missense_Mutation p.M1661L 0.17 tolerated(0.36) benign(0.004) TCGA-CG-4305-01 7 44105067 44105067 C T PGAM2 Missense_Mutation p.R21H 0.12 deleterious(0.03) probably_damaging(0.937) TCGA-CG-4305-01 7 44149841 44149841 G A AEBP1 Silent p.A432A 0.20 TCGA-CG-4305-01 7 47925401 47925401 C - PKD1L1 Frame_Shift_Del p.E1030Rfs*8 0.18 TCGA-CG-4305-01 7 4917428 4917428 C T RADIL Missense_Mutation p.V115M 0.14 deleterious(0) probably_damaging(0.993) TCGA-CG-4305-01 7 50531075 50531075 T - DDC Frame_Shift_Del p.I433Sfs*98 0.15 TCGA-CG-4305-01 7 5521395 5521395 G A FBXL18 3'UTR 0.22 TCGA-CG-4305-01 7 56051483 56051483 G A GBAS Silent p.L169L 0.19 TCGA-CG-4305-01 7 5662338 5662338 T C RNF216 3'UTR 0.17 TCGA-CG-4305-01 7 64166846 64166846 C T ZNF107 Missense_Mutation p.T55M 0.14 deleterious(0.03) benign(0.004) TCGA-CG-4305-01 7 64438973 64438973 T - ZNF117 Frame_Shift_Del p.I326Ffs*28 0.11 TCGA-CG-4305-01 7 70254882 70254883 GA - AUTS2 Frame_Shift_Del p.D896Pfs*72 0.14 TCGA-CG-4305-01 7 72281139 72281139 C T TYW1B Missense_Mutation p.R117Q 0.14 deleterious(0.01) probably_damaging(1) TCGA-CG-4305-01 7 72658652 72658652 G A GTF2IRD2P1 RNA 0.13 TCGA-CG-4305-01 7 73010239 73010239 G A MLXIPL Missense_Mutation p.R707C 0.28 deleterious(0) probably_damaging(0.99) TCGA-CG-4305-01 7 75176318 75176318 G A HIP1 Silent p.C826C 0.30 TCGA-CG-4305-01 7 75633122 75633122 C T STYXL1 Silent p.P217P 0.09 TCGA-CG-4305-01 7 81598254 81598254 C G CACNA2D1 Missense_Mutation p.V782L 0.18 deleterious(0.01) possibly_damaging(0.824) TCGA-CG-4305-01 7 81964453 81964453 C T CACNA2D1 Missense_Mutation p.V98M 0.13 deleterious(0.01) benign(0.383) TCGA-CG-4305-01 7 82785291 82785291 C A PCLO Missense_Mutation p.Q222H 0.18 unknown(0) TCGA-CG-4305-01 7 83119491 83119491 A G SEMA3E Missense_Mutation p.V72A 0.17 deleterious(0.02) possibly_damaging(0.641) TCGA-CG-4305-01 7 86468787 86468787 G A GRM3 Missense_Mutation p.A653T 0.21 tolerated(0.33) benign(0.119) TCGA-CG-4305-01 7 87092221 87092221 G A ABCB4 Nonsense_Mutation p.R47* 0.13 TCGA-CG-4305-01 7 87762257 87762257 C T ADAM22 Silent p.G356G 0.13 TCGA-CG-4305-01 7 88423902 88423902 T G C7orf62 Missense_Mutation p.K119Q 0.07 tolerated(0.14) benign(0.025) TCGA-CG-4305-01 7 88965252 88965252 G A ZNF804B Missense_Mutation p.A986T 0.10 tolerated(0.84) benign(0.001) TCGA-CG-4305-01 7 89891317 89891317 A - C7orf63 Frame_Shift_Del p.N103Tfs*6 0.09 TCGA-CG-4305-01 7 91742875 91742875 A - CYP51A1 3'UTR 0.18 TCGA-CG-4305-01 7 92730542 92730542 G C SAMD9 3'UTR 0.15 TCGA-CG-4305-01 7 92730766 92730766 T - SAMD9 Frame_Shift_Del p.I1549Sfs*10 0.18 TCGA-CG-4305-01 7 92732152 92732152 C A SAMD9 Missense_Mutation p.A1087S 0.11 tolerated(0.05) benign(0.256) TCGA-CG-4305-01 7 92987813 92987813 T - CCDC132 3'UTR 0.18 TCGA-CG-4305-01 7 94167072 94167072 A G CASD1 Missense_Mutation p.M378V 0.14 deleterious(0) possibly_damaging(0.714) TCGA-CG-4305-01 7 95606892 95606892 A - DYNC1I1 Frame_Shift_Del p.K205Nfs*4 0.15 TCGA-CG-4305-01 7 98573796 98573796 G A TRRAP Missense_Mutation p.V2615I 0.18 benign(0.003) TCGA-CG-4305-01 7 99700543 99700543 G A AP4M1 Missense_Mutation p.R104H 0.17 tolerated(0.11) benign(0.005) TCGA-CG-4305-01 8 100519362 100519362 C G VPS13B Intron 0.24 TCGA-CG-4305-01 8 100836166 100836166 A G VPS13B Missense_Mutation p.K3122R 0.15 tolerated(1) benign(0.292) TCGA-CG-4305-01 8 102571012 102571012 G A GRHL2 Missense_Mutation p.S217N 0.15 tolerated(0.11) benign(0.022) TCGA-CG-4305-01 8 104312361 104312361 C T FZD6 Missense_Mutation p.T9M 0.15 tolerated_low_confidence(0.14) benign(0.005) TCGA-CG-4305-01 8 105105763 105105763 A G RIMS2 Intron 0.14 TCGA-CG-4305-01 8 110576795 110576795 T C EBAG9 3'UTR 0.15 TCGA-CG-4305-01 8 117671196 117671196 G A EIF3H Missense_Mutation p.R105W 0.21 deleterious(0) probably_damaging(0.991) TCGA-CG-4305-01 8 119391937 119391937 G A SAMD12 Nonsense_Mutation p.R109* 0.17 TCGA-CG-4305-01 8 124714949 124714949 A G ANXA13 Missense_Mutation p.I81T 0.12 deleterious(0) possibly_damaging(0.543) TCGA-CG-4305-01 8 131149215 131149216 - T ASAP1 Frame_Shift_Ins p.S384Ifs*3 0.17 TCGA-CG-4305-01 8 132989340 132989340 G T EFR3A Splice_Site p.X442_splice 0.11 TCGA-CG-4305-01 8 133141583 133141583 C T KCNQ3 Missense_Mutation p.G849S 0.17 deleterious_low_confidence(0.02) possibly_damaging(0.615) TCGA-CG-4305-01 8 13357188 13357188 T C DLC1 Silent p.Q131Q 0.13 TCGA-CG-4305-01 8 133919026 133919026 A G TG Missense_Mutation p.Q1243R 0.14 deleterious(0) probably_damaging(0.998) TCGA-CG-4305-01 8 134144191 134144191 G T TG Splice_Site p.X2666_splice 0.14 TCGA-CG-4305-01 8 134232898 134232898 T C WISP1 Missense_Mutation p.Y142H 0.15 deleterious(0.04) benign(0.208) TCGA-CG-4305-01 8 134233083 134233083 C T WISP1 Silent p.F203F 0.13 TCGA-CG-4305-01 8 139190804 139190804 G T FAM135B Missense_Mutation p.L335I 0.13 deleterious(0.02) probably_damaging(0.993) TCGA-CG-4305-01 8 141321391 141321391 G A TRAPPC9 Silent p.G624G 0.17 TCGA-CG-4305-01 8 143602199 143602199 G A BAI1 Silent p.E979E 0.13 TCGA-CG-4305-01 8 143867013 143867013 G A LY6D Missense_Mutation p.T48M 0.19 tolerated(0.57) benign(0) TCGA-CG-4305-01 8 144621235 144621235 C - ZC3H3 Frame_Shift_Del p.G101Afs*102 0.30 TCGA-CG-4305-01 8 144803816 144803816 G T MAPK15 Missense_Mutation p.K434N 0.10 tolerated(0.45) benign(0.012) TCGA-CG-4305-01 8 144811445 144811445 C T FAM83H Missense_Mutation p.E166K 0.08 deleterious(0.01) probably_damaging(0.996) TCGA-CG-4305-01 8 144921062 144921062 G A NRBP2 Missense_Mutation p.A246V 0.17 deleterious(0) probably_damaging(0.996) TCGA-CG-4305-01 8 144944907 144944907 A C EPPK1 Missense_Mutation p.S839A 0.16 possibly_damaging(0.864) TCGA-CG-4305-01 8 144993950 144993950 C T PLEC Missense_Mutation p.V3484M 0.17 probably_damaging(0.986) TCGA-CG-4305-01 8 145278100 145278100 C T MROH1 Silent p.I435I 0.20 TCGA-CG-4305-01 8 145537675 145537675 C - HSF1 Frame_Shift_Del p.R450Gfs*66 0.14 TCGA-CG-4305-01 8 145667679 145667679 G A TONSL Missense_Mutation p.A232V 0.17 deleterious(0) probably_damaging(0.998) TCGA-CG-4305-01 8 145725483 145725483 G A PPP1R16A Missense_Mutation p.A161T 0.19 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 8 145830920 145830920 C T ARHGAP39 Missense_Mutation p.R27Q 0.17 deleterious(0.01) probably_damaging(0.981) TCGA-CG-4305-01 8 146067087 146067087 G A ZNF7 Missense_Mutation p.E199K 0.17 tolerated(0.67) benign(0.005) TCGA-CG-4305-01 8 146278736 146278736 C T C8orf33 Missense_Mutation p.P153S 0.13 tolerated(0.08) probably_damaging(0.997) TCGA-CG-4305-01 8 16021619 16021619 C A MSR1 Missense_Mutation p.D258Y 0.13 deleterious(0) probably_damaging(0.986) TCGA-CG-4305-01 8 17055134 17055134 C A ZDHHC2 Silent p.R139R 0.16 TCGA-CG-4305-01 8 17867107 17867107 C T PCM1 Missense_Mutation p.L1672F 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-CG-4305-01 8 1873491 1873491 G A ARHGEF10 Missense_Mutation p.G844E 0.14 tolerated(0.1) probably_damaging(0.987) TCGA-CG-4305-01 8 19250969 19250969 G T SH2D4A Missense_Mutation p.D397Y 0.12 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 8 196342 196342 A - ZNF596 Frame_Shift_Del p.A501Qfs*2 0.17 TCGA-CG-4305-01 8 20107710 20107710 G A LZTS1 Silent p.G438G 0.12 TCGA-CG-4305-01 8 21903622 21903622 A G FGF17 Intron 0.11 TCGA-CG-4305-01 8 21959298 21959298 G A FAM160B2 Missense_Mutation p.R596Q 0.14 tolerated(0.47) benign(0.007) TCGA-CG-4305-01 8 22005798 22005798 G A LGI3 Silent p.L508L 0.10 TCGA-CG-4305-01 8 22108174 22108174 A G POLR3D 3'UTR 0.11 TCGA-CG-4305-01 8 22459291 22459291 C A C8orf58 Missense_Mutation p.L195M 0.13 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 8 22464797 22464797 T C CCAR2 Missense_Mutation p.I149T 0.18 deleterious(0) possibly_damaging(0.661) TCGA-CG-4305-01 8 22476226 22476226 G A CCAR2 Missense_Mutation p.E773K 0.20 deleterious(0.02) benign(0.052) TCGA-CG-4305-01 8 24813259 24813259 C T CTD-2168K21.2 5'Flank 0.16 TCGA-CG-4305-01 8 25290099 25290099 A G KCTD9 Missense_Mutation p.L325P 0.14 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 8 26237775 26237775 G A BNIP3L 5'Flank 0.13 TCGA-CG-4305-01 8 26510813 26510813 G A DPYSL2 Silent p.T509T 0.15 TCGA-CG-4305-01 8 26513311 26513311 T G DPYSL2 3'UTR 0.23 TCGA-CG-4305-01 8 28206306 28206306 C T ZNF395 Missense_Mutation p.G491D 0.12 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 8 28420595 28420595 T C FZD3 3'UTR 0.13 TCGA-CG-4305-01 8 3165998 3165998 G A CSMD1 Missense_Mutation p.P1220L 0.14 probably_damaging(1) TCGA-CG-4305-01 8 35406866 35406866 C T UNC5D Missense_Mutation p.P54S 0.12 deleterious(0) probably_damaging(0.999) TCGA-CG-4305-01 8 37720359 37720359 G T RAB11FIP1 3'UTR 0.10 TCGA-CG-4305-01 8 37991017 37991018 TT - ASH2L Frame_Shift_Del p.F525Cfs*3 0.20 TCGA-CG-4305-01 8 38178634 38178635 TC - WHSC1L1 Frame_Shift_Del p.K589Ifs*3 0.13 TCGA-CG-4305-01 8 38187222 38187222 T - WHSC1L1 Frame_Shift_Del p.T419Pfs*8 0.12 TCGA-CG-4305-01 8 38275768 38275768 G A FGFR1 Missense_Mutation p.R501C 0.15 deleterious(0.04) benign(0.045) TCGA-CG-4305-01 8 38279341 38279341 T C FGFR1 Missense_Mutation p.H383R 0.16 tolerated(0.07) benign(0.197) TCGA-CG-4305-01 8 3855550 3855550 G A CSMD1 Silent p.N231N 0.15 TCGA-CG-4305-01 8 38705511 38705511 G T TACC1 Missense_Mutation p.E796D 0.15 deleterious(0) probably_damaging(0.91) TCGA-CG-4305-01 8 39845406 39845406 A G IDO2 Missense_Mutation p.I169V 0.14 tolerated(0.77) benign(0.005) TCGA-CG-4305-01 8 41122849 41122849 A G SFRP1 Missense_Mutation p.L261P 0.14 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 8 41526075 41526075 C T ANK1 Missense_Mutation p.D1743N 0.11 tolerated_low_confidence(0.11) benign(0.419) TCGA-CG-4305-01 8 41753904 41753904 C T ANK1 Missense_Mutation p.R32Q 0.08 deleterious_low_confidence(0.04) benign(0.407) TCGA-CG-4305-01 8 42012427 42012427 C - AP3M2 Frame_Shift_Del p.P76Lfs*26 0.17 TCGA-CG-4305-01 8 42214859 42214859 A - POLB Frame_Shift_Del p.V169Wfs*27 0.16 TCGA-CG-4305-01 8 42587519 42587519 T C CHRNB3 Missense_Mutation p.S357P 0.18 tolerated(0.23) benign(0.014) TCGA-CG-4305-01 8 42940306 42940306 T C FNTA Missense_Mutation p.C341R 0.09 deleterious(0) probably_damaging(0.999) TCGA-CG-4305-01 8 48845642 48845642 C T PRKDC Missense_Mutation p.V572I 0.18 benign(0.026) TCGA-CG-4305-01 8 48852128 48852128 A G PRKDC Missense_Mutation p.Y366H 0.08 probably_damaging(1) TCGA-CG-4305-01 8 53540632 53540632 T C RB1CC1 Silent p.S1532S 0.09 TCGA-CG-4305-01 8 53573539 53573539 T G RB1CC1 Missense_Mutation p.K525T 0.16 tolerated(0.09) probably_damaging(0.997) TCGA-CG-4305-01 8 53853024 53853024 G A NPBWR1 Missense_Mutation p.R186H 0.20 tolerated(0.09) possibly_damaging(0.756) TCGA-CG-4305-01 8 61654770 61654770 C T CHD7 Missense_Mutation p.P260L 0.15 possibly_damaging(0.713) TCGA-CG-4305-01 8 61764728 61764728 G A CHD7 Missense_Mutation p.R1939Q 0.13 possibly_damaging(0.637) TCGA-CG-4305-01 8 623865 623865 T - ERICH1 Frame_Shift_Del p.R163Gfs*3 0.19 TCGA-CG-4305-01 8 65508891 65508892 - T CYP7B1 3'UTR 0.20 TCGA-CG-4305-01 8 6690370 6690370 C T GS1-24F4.2 5'Flank 0.19 TCGA-CG-4305-01 8 67793093 67793093 T C MCMDC2 Missense_Mutation p.V240A 0.15 tolerated(0.46) benign(0.051) TCGA-CG-4305-01 8 67963489 67963489 C T COPS5 Silent p.T249T 0.16 TCGA-CG-4305-01 8 70744651 70744651 C T SLCO5A1 Silent p.P86P 0.17 TCGA-CG-4305-01 8 71593234 71593234 T - XKR9 5'UTR 0.18 TCGA-CG-4305-01 8 73480092 73480092 G - KCNB2 Frame_Shift_Del p.G43Afs*40 0.10 TCGA-CG-4305-01 8 74893786 74893786 A G TMEM70 Missense_Mutation p.Y238C 0.14 deleterious(0) probably_damaging(0.999) TCGA-CG-4305-01 8 75227418 75227418 C T JPH1 Missense_Mutation p.V273M 0.11 tolerated(0.18) probably_damaging(0.96) TCGA-CG-4305-01 8 77776241 77776241 C T ZFHX4 Missense_Mutation p.P3431S 0.09 possibly_damaging(0.57) TCGA-CG-4305-01 8 82196753 82196753 G A FABP5 Missense_Mutation p.C120Y 0.05 tolerated(0.13) possibly_damaging(0.675) TCGA-CG-4305-01 8 86358463 86358463 G A CA3 Silent p.P200P 0.17 TCGA-CG-4305-01 8 94747516 94747516 A C RBM12B Missense_Mutation p.S375A 0.14 tolerated(0.29) benign(0.009) TCGA-CG-4305-01 8 95174358 95174358 C T CDH17 Missense_Mutation p.V439I 0.15 tolerated(0.14) possibly_damaging(0.451) TCGA-CG-4305-01 8 95272654 95272654 A G GEM Silent p.A26A 0.19 TCGA-CG-4305-01 8 95272717 95272719 ATT - GEM In_Frame_Del p.N5del 0.24 TCGA-CG-4305-01 8 95853731 95853732 - T INTS8 Frame_Shift_Ins p.I346Hfs*2 0.12 TCGA-CG-4305-01 9 101990194 101990194 T C SEC61B Missense_Mutation p.C39R 0.20 tolerated(0.39) benign(0.112) TCGA-CG-4305-01 9 107298417 107298417 A G OR13C3 Silent p.I226I 0.17 TCGA-CG-4305-01 9 112141753 112141753 T G PTPN3 3'UTR 0.14 TCGA-CG-4305-01 9 113091532 113091532 C T TXNDC8 Missense_Mutation p.V57M 0.13 deleterious(0) probably_damaging(0.985) TCGA-CG-4305-01 9 113100096 113100096 T C TXNDC8 5'Flank 0.20 TCGA-CG-4305-01 9 114305051 114305051 C T ZNF483 Silent p.C612C 0.20 TCGA-CG-4305-01 9 115759723 115759723 T - ZNF883 RNA 0.17 TCGA-CG-4305-01 9 115925105 115925105 G A SLC31A2 Missense_Mutation p.V114I 0.18 deleterious(0.03) benign(0.384) TCGA-CG-4305-01 9 123675628 123675628 C T TRAF1 Missense_Mutation p.R228H 0.20 tolerated(0.63) benign(0) TCGA-CG-4305-01 9 124752027 124752027 T G TTLL11 Missense_Mutation p.D329A 0.16 deleterious(0.01) benign(0.041) TCGA-CG-4305-01 9 125288709 125288709 A G OR1N1 Silent p.Y288Y 0.25 TCGA-CG-4305-01 9 125932264 125932264 C T STRBP Missense_Mutation p.R151Q 0.19 tolerated(0.35) benign(0.002) TCGA-CG-4305-01 9 128692121 128692121 C T PBX3 Missense_Mutation p.A235V 0.18 deleterious(0.02) possibly_damaging(0.604) TCGA-CG-4305-01 9 130496638 130496638 G A TOR2A Silent p.R119R 0.12 TCGA-CG-4305-01 9 131019737 131019737 C T GOLGA2 Missense_Mutation p.R902K 0.26 tolerated(1) benign(0.016) TCGA-CG-4305-01 9 131219616 131219616 C T ODF2 5'UTR 0.17 TCGA-CG-4305-01 9 131339690 131339690 A G SPTAN1 Silent p.T330T 0.20 TCGA-CG-4305-01 9 131375680 131375680 C T SPTAN1 Silent p.S1688S 0.19 TCGA-CG-4305-01 9 131864220 131864220 G A CRAT Silent p.G249G 0.17 TCGA-CG-4305-01 9 133951311 133951311 G T LAMC3 Missense_Mutation p.E1196D 0.18 tolerated(0.11) benign(0.026) TCGA-CG-4305-01 9 135553705 135553705 C T GTF3C4 Silent p.L233L 0.17 TCGA-CG-4305-01 9 135765381 135765381 G - C9orf9 3'UTR 0.18 TCGA-CG-4305-01 9 136004600 136004600 C T RALGDS Missense_Mutation p.A36T 0.14 tolerated_low_confidence(0.23) possibly_damaging(0.824) TCGA-CG-4305-01 9 136337261 136337261 G A SLC2A6 Missense_Mutation p.A469V 0.11 deleterious(0.01) benign(0.407) TCGA-CG-4305-01 9 136906997 136906997 G A BRD3 Missense_Mutation p.P431L 0.26 tolerated(0.22) benign(0.127) TCGA-CG-4305-01 9 138376423 138376423 G A PPP1R26 Missense_Mutation p.G23R 0.22 tolerated(0.21) probably_damaging(0.991) TCGA-CG-4305-01 9 139100732 139100732 C T QSOX2 Missense_Mutation p.G647R 0.22 tolerated(0.3) benign(0.005) TCGA-CG-4305-01 9 139368937 139368937 A G SEC16A Missense_Mutation p.V1044A 0.15 deleterious(0) probably_damaging(0.99) TCGA-CG-4305-01 9 139395218 139395218 G A NOTCH1 Missense_Mutation p.P1907L 0.25 tolerated(0.13) possibly_damaging(0.608) TCGA-CG-4305-01 9 140350863 140350863 G A NSMF Missense_Mutation p.A235V 0.23 deleterious_low_confidence(0) probably_damaging(0.916) TCGA-CG-4305-01 9 140356679 140356679 G - PNPLA7 Frame_Shift_Del p.I1200Sfs*148 0.31 TCGA-CG-4305-01 9 140672338 140672338 G A EHMT1 Missense_Mutation p.A675T 0.20 tolerated(0.36) benign(0.097) TCGA-CG-4305-01 9 14851500 14851500 G T FREM1 Missense_Mutation p.L312M 0.19 deleterious(0) probably_damaging(0.991) TCGA-CG-4305-01 9 20789392 20789392 A G FOCAD Missense_Mutation p.T414A 0.22 tolerated(0.51) benign(0) TCGA-CG-4305-01 9 21216715 21216715 T C IFNA16 3'UTR 0.20 TCGA-CG-4305-01 9 26842611 26842611 A G CAAP1 Silent p.N258N 0.24 TCGA-CG-4305-01 9 32418455 32418455 G A ACO1 Missense_Mutation p.V202M 0.22 deleterious(0) probably_damaging(0.971) TCGA-CG-4305-01 9 32436322 32436322 C T ACO1 Missense_Mutation p.A725V 0.17 deleterious(0) probably_damaging(0.996) TCGA-CG-4305-01 9 3257056 3257056 G T RFX3 Silent p.P583P 0.14 TCGA-CG-4305-01 9 32631546 32631546 G A TAF1L Silent p.F1344F 0.17 TCGA-CG-4305-01 9 32632408 32632408 T C TAF1L Missense_Mutation p.H1057R 0.17 tolerated(0.68) benign(0) TCGA-CG-4305-01 9 36118810 36118810 T G RECK Missense_Mutation p.S770R 0.15 deleterious(0) possibly_damaging(0.475) TCGA-CG-4305-01 9 36589613 36589613 G A MELK Silent p.V75V 0.18 TCGA-CG-4305-01 9 3828391 3828391 T C GLIS3 Missense_Mutation p.S892G 0.20 tolerated(1) benign(0) TCGA-CG-4305-01 9 5022214 5022214 G A JAK2 Splice_Site p.X76_splice 0.16 TCGA-CG-4305-01 9 70993145 70993145 A G PGM5 Missense_Mutation p.I98V 0.07 deleterious(0.01) possibly_damaging(0.573) TCGA-CG-4305-01 9 75784009 75784009 T C ANXA1 Missense_Mutation p.M308T 0.24 deleterious(0.01) benign(0.039) TCGA-CG-4305-01 9 77457094 77457094 G T TRPM6 Silent p.T106T 0.18 TCGA-CG-4305-01 9 79324209 79324209 T C PRUNE2 Missense_Mutation p.E994G 0.21 tolerated(0.42) benign(0.002) TCGA-CG-4305-01 9 79325181 79325181 G A PRUNE2 Missense_Mutation p.A670V 0.20 deleterious(0.01) possibly_damaging(0.536) TCGA-CG-4305-01 9 94171822 94171822 G A NFIL3 Missense_Mutation p.H399Y 0.19 deleterious(0.01) possibly_damaging(0.88) TCGA-CG-4305-01 9 94486449 94486449 C T ROR2 Missense_Mutation p.S776N 0.19 tolerated(0.06) probably_damaging(0.998) TCGA-CG-4305-01 9 96320140 96320140 G A FAM120A Missense_Mutation p.R839H 0.13 deleterious(0) probably_damaging(0.993) TCGA-CG-4305-01 X 100079177 100079177 T C CSTF2 Silent p.A211A 0.41 TCGA-CG-4305-01 X 10046875 10046875 C A WWC3 Missense_Mutation p.P86Q 0.45 deleterious(0) probably_damaging(0.99) TCGA-CG-4305-01 X 101396012 101396012 C T TCEAL6 Missense_Mutation p.E98K 0.44 tolerated(0.71) possibly_damaging(0.671) TCGA-CG-4305-01 X 101972170 101972170 A - GPRASP2 Frame_Shift_Del p.S793Vfs*6 0.34 TCGA-CG-4305-01 X 102632528 102632528 C T NGFRAP1 Missense_Mutation p.R37W 0.29 deleterious(0.05) benign(0) TCGA-CG-4305-01 X 103434328 103434328 C T FAM199X Missense_Mutation p.R346C 0.41 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-CG-4305-01 X 106172222 106172222 G T CLDN2 3'UTR 0.31 TCGA-CG-4305-01 X 115582794 115582794 C T SLC6A14 Missense_Mutation p.A373V 0.42 deleterious(0) probably_damaging(1) TCGA-CG-4305-01 X 11682500 11682500 C T ARHGAP6 Missense_Mutation p.R150Q 0.45 tolerated_low_confidence(0.18) benign(0.208) TCGA-CG-4305-01 X 128879240 128879240 C T XPNPEP2 Missense_Mutation p.A99V 0.44 deleterious(0) possibly_damaging(0.864) TCGA-CG-4305-01 X 129060265 129060265 C T UTP14A Missense_Mutation p.P665S 0.42 deleterious(0) benign(0.437) TCGA-CG-4305-01 X 135290661 135290661 C T FHL1 Silent p.A183A 0.37 TCGA-CG-4305-01 X 135631137 135631137 C T VGLL1 Missense_Mutation p.L202F 0.42 tolerated(0.28) benign(0.035) TCGA-CG-4305-01 X 138630579 138630579 A G F9 Missense_Mutation p.D150G 0.42 tolerated(0.4) benign(0.001) TCGA-CG-4305-01 X 146271242 146271242 A G MIR513C RNA 0.43 TCGA-CG-4305-01 X 15287932 15287932 A C ASB9 Missense_Mutation p.I22S 0.38 tolerated(0.26) benign(0.025) TCGA-CG-4305-01 X 153220897 153220897 G T HCFC1 Missense_Mutation p.P985T 0.40 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-CG-4305-01 X 16773179 16773179 G A SYAP1 Silent p.E229E 0.28 TCGA-CG-4305-01 X 18278348 18278348 G A SCML2 Missense_Mutation p.R338C 0.25 deleterious(0.04) possibly_damaging(0.586) TCGA-CG-4305-01 X 18836177 18836177 G A PPEF1 Missense_Mutation p.S472N 0.38 deleterious(0.01) benign(0.077) TCGA-CG-4305-01 X 18949781 18949781 A G PHKA2 Missense_Mutation p.I408T 0.37 deleterious(0) probably_damaging(0.939) TCGA-CG-4305-01 X 18969342 18969342 G T PHKA2 Missense_Mutation p.L112M 0.36 deleterious(0) probably_damaging(0.995) TCGA-CG-4305-01 X 200930 200930 G A PLCXD1 Missense_Mutation p.A26T 0.23 tolerated(0.56) benign(0.09) TCGA-CG-4305-01 X 34148723 34148723 G A FAM47A Missense_Mutation p.P558L 0.42 tolerated(0.39) benign(0.009) TCGA-CG-4305-01 X 44918711 44918711 G T KDM6A Missense_Mutation p.Q398H 0.20 deleterious(0.02) probably_damaging(0.984) TCGA-CG-4305-01 X 48826374 48826374 C T KCND1 Missense_Mutation p.R102Q 0.36 tolerated(0.06) benign(0.067) TCGA-CG-4305-01 X 49022484 49022484 T A MAGIX Missense_Mutation p.S251T 0.42 deleterious(0.01) probably_damaging(0.937) TCGA-CG-4305-01 X 51488294 51488294 T C GSPT2 Silent p.V524V 0.40 TCGA-CG-4305-01 X 57935575 57935575 C T ZXDA Missense_Mutation p.C427Y 0.46 deleterious(0) probably_damaging(0.996) TCGA-CG-4305-01 X 64139033 64139033 G - ZC4H2 Frame_Shift_Del p.I151Sfs*36 0.37 TCGA-CG-4305-01 X 70127618 70127618 A - TEX11 5'UTR 0.36 TCGA-CG-4305-01 X 70148313 70148313 T C SLC7A3 Missense_Mutation p.T234A 0.64 tolerated(0.12) benign(0.117) TCGA-CG-4305-01 X 73641744 73641744 G A SLC16A2 Missense_Mutation p.G91D 0.53 tolerated(0.35) possibly_damaging(0.854) TCGA-CG-4305-01 X 79942445 79942446 - T BRWD3 Frame_Shift_Ins p.Q1308Tfs*11 0.29 TCGA-CG-4305-01 X 84362935 84362935 C T SATL1 Missense_Mutation p.S347N 0.40 tolerated(0.35) possibly_damaging(0.725) TCGA-CG-4305-01 X 8504917 8504917 G A KAL1 Missense_Mutation p.R506W 0.42 tolerated(0.06) benign(0.002) TCGA-CG-4305-01 X 85219036 85219036 G A CHM Silent p.V112V 0.38 TCGA-CG-4305-01 X 91873997 91873997 A G PCDH11X 3'UTR 0.37 TCGA-CG-4305-01 X 99662505 99662505 G - PCDH19 Frame_Shift_Del p.P364Rfs*4 0.34 TCGA-CG-4306-01 10 100185361 100185361 G A HPS1 Silent p.L424L 0.25 TCGA-CG-4306-01 10 101639896 101639896 G T DNMBP Missense_Mutation p.S1407Y 0.20 tolerated(0.07) possibly_damaging(0.615) TCGA-CG-4306-01 10 103826053 103826053 C A HPS6 Silent p.A274A 0.21 TCGA-CG-4306-01 10 11363317 11363317 A C CELF2 Missense_Mutation p.Q421P 0.32 tolerated(0.33) benign(0.036) TCGA-CG-4306-01 10 115981158 115981158 T C TDRD1 Missense_Mutation p.V938A 0.24 deleterious(0.03) probably_damaging(0.932) TCGA-CG-4306-01 10 118030602 118030602 G A GFRA1 Silent p.S22S 0.15 TCGA-CG-4306-01 10 120460856 120460856 G A CACUL1 Missense_Mutation p.T253M 0.20 tolerated(0.05) benign(0.421) TCGA-CG-4306-01 10 120928781 120928781 C T PRDX3 Missense_Mutation p.V209M 0.31 deleterious(0.04) probably_damaging(0.994) TCGA-CG-4306-01 10 121551680 121551681 - T INPP5F Frame_Shift_Ins p.W211Lfs*3 0.24 TCGA-CG-4306-01 10 125601919 125601919 C T CPXM2 Missense_Mutation p.R200Q 0.20 tolerated(0.06) possibly_damaging(0.892) TCGA-CG-4306-01 10 125805706 125805706 C T CHST15 Missense_Mutation p.C8Y 0.16 deleterious_low_confidence(0) possibly_damaging(0.665) TCGA-CG-4306-01 10 126172753 126172753 G A LHPP Silent p.S57S 0.36 TCGA-CG-4306-01 10 127436239 127436239 G A EDRF1 Silent p.P983P 0.36 TCGA-CG-4306-01 10 1279635 1279635 C T ADARB2 Splice_Site p.X505_splice 0.28 TCGA-CG-4306-01 10 128974523 128974523 T C FAM196A Missense_Mutation p.Q46R 0.22 deleterious(0) probably_damaging(0.999) TCGA-CG-4306-01 10 129676427 129676427 C T CLRN3 Missense_Mutation p.G223R 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-CG-4306-01 10 134996942 134996942 C T KNDC1 Missense_Mutation p.A152V 0.21 tolerated(0.2) benign(0.015) TCGA-CG-4306-01 10 135026413 135026413 C T KNDC1 Missense_Mutation p.T1477M 0.18 deleterious(0) probably_damaging(0.999) TCGA-CG-4306-01 10 135233645 135233645 C - MTG1 Frame_Shift_Del p.P329Rfs*28 0.16 TCGA-CG-4306-01 10 16990509 16990509 C T CUBN Missense_Mutation p.G1726D 0.18 deleterious(0) probably_damaging(1) TCGA-CG-4306-01 10 18138557 18138557 T C MRC1 Silent p.G371G 0.18 TCGA-CG-4306-01 10 24825761 24825761 G A KIAA1217 Missense_Mutation p.R1158Q 0.25 deleterious(0.01) possibly_damaging(0.71) TCGA-CG-4306-01 10 24833919 24833919 G - KIAA1217 Frame_Shift_Del p.A1742Pfs*11 0.13 TCGA-CG-4306-01 10 25886723 25886723 C T GPR158 Missense_Mutation p.A723V 0.21 deleterious(0) benign(0.387) TCGA-CG-4306-01 10 28908508 28908508 A - WAC Frame_Shift_Del p.N641Ifs*17 0.22 TCGA-CG-4306-01 10 35929020 35929020 C T FZD8 Nonsense_Mutation p.W446* 0.33 TCGA-CG-4306-01 10 38120692 38120692 C T ZNF248 Missense_Mutation p.E531K 0.23 deleterious(0.04) probably_damaging(0.996) TCGA-CG-4306-01 10 43292210 43292210 T C BMS1 Silent p.D506D 0.24 TCGA-CG-4306-01 10 43869048 43869048 C T FXYD4 5'UTR 0.13 TCGA-CG-4306-01 10 44052449 44052449 G A ZNF239 Missense_Mutation p.S360L 0.18 deleterious(0) probably_damaging(0.997) TCGA-CG-4306-01 10 45652303 45652304 - A RP11-445N18.7 RNA 0.23 TCGA-CG-4306-01 10 46964014 46964015 AC - SYT15 Frame_Shift_Del p.F317Cfs*30 0.11 TCGA-CG-4306-01 10 46999541 46999541 C T GPRIN2 Silent p.L221L 0.19 TCGA-CG-4306-01 10 47087175 47087175 C T NPY4R Missense_Mutation p.S131L 0.13 deleterious(0) probably_damaging(0.992) TCGA-CG-4306-01 10 48370516 48370516 C - ZNF488 5'UTR 0.33 TCGA-CG-4306-01 10 48389221 48389221 C T RBP3 Missense_Mutation p.A553T 0.29 tolerated(0.07) possibly_damaging(0.757) TCGA-CG-4306-01 10 48414123 48414123 T C GDF2 Missense_Mutation p.R249G 0.22 deleterious(0) benign(0) TCGA-CG-4306-01 10 50315742 50315742 C T VSTM4 Silent p.Q118Q 0.32 TCGA-CG-4306-01 10 5144398 5144398 C T AKR1C3 Nonsense_Mutation p.R226* 0.25 TCGA-CG-4306-01 10 5799586 5799586 C A FAM208B Missense_Mutation p.A2279E 0.26 deleterious(0) possibly_damaging(0.529) TCGA-CG-4306-01 10 60154714 60154714 C T TFAM Silent p.D207D 0.16 TCGA-CG-4306-01 10 6067873 6067873 G A IL2RA Silent p.S60S 0.26 TCGA-CG-4306-01 10 60994193 60994193 G A PHYHIPL Missense_Mutation p.R79H 0.17 deleterious_low_confidence(0.05) benign(0.327) TCGA-CG-4306-01 10 61011259 61011260 - A FAM13C Intron 0.24 TCGA-CG-4306-01 10 61831926 61831926 G A ANK3 Missense_Mutation p.R2905C 0.27 benign(0.04) TCGA-CG-4306-01 10 64573218 64573218 C T EGR2 Missense_Mutation p.G394S 0.18 deleterious(0) probably_damaging(0.983) TCGA-CG-4306-01 10 64573837 64573837 C T EGR2 Silent p.A187A 0.26 TCGA-CG-4306-01 10 64968900 64968900 T C JMJD1C Silent p.A930A 0.29 TCGA-CG-4306-01 10 69991318 69991318 C T ATOH7 Silent p.A39A 0.18 TCGA-CG-4306-01 10 71851564 71851564 C T H2AFY2 Missense_Mutation p.P111S 0.17 tolerated(0.07) benign(0.007) TCGA-CG-4306-01 10 72511870 72511870 C T ADAMTS14 Silent p.Y875Y 0.26 TCGA-CG-4306-01 10 72511949 72511949 C T ADAMTS14 Missense_Mutation p.R902W 0.17 deleterious(0) probably_damaging(0.999) TCGA-CG-4306-01 10 73047450 73047450 G A UNC5B Missense_Mutation p.A277T 0.05 tolerated(0.17) benign(0.078) TCGA-CG-4306-01 10 74767948 74767950 ACA - P4HA1 3'UTR 0.37 TCGA-CG-4306-01 10 76803595 76803595 C T DUPD1 Silent p.P127P 0.23 TCGA-CG-4306-01 10 82034359 82034359 G T MAT1A Silent p.T334T 0.29 TCGA-CG-4306-01 10 88696544 88696544 G T MMRN2 Missense_Mutation p.L936M 0.23 deleterious(0.01) possibly_damaging(0.722) TCGA-CG-4306-01 10 90122398 90122398 G A RNLS Missense_Mutation p.T204M 0.24 tolerated(0.11) benign(0.037) TCGA-CG-4306-01 10 91353042 91353042 G C PANK1 Missense_Mutation p.S508C 0.33 deleterious(0.01) possibly_damaging(0.68) TCGA-CG-4306-01 10 93390388 93390388 G A PPP1R3C Missense_Mutation p.R84C 0.28 deleterious(0) possibly_damaging(0.677) TCGA-CG-4306-01 10 94294479 94294479 A - IDE Frame_Shift_Del p.L116Wfs*43 0.28 TCGA-CG-4306-01 10 95381733 95381733 T C PDE6C Silent p.D256D 0.22 TCGA-CG-4306-01 10 97987263 97987263 G A BLNK Silent p.A88A 0.26 TCGA-CG-4306-01 11 1009121 1009121 C T AP2A2 Silent p.N814N 0.32 TCGA-CG-4306-01 11 1016104 1016104 C T MUC6 Missense_Mutation p.V2233M 0.22 benign(0.021) TCGA-CG-4306-01 11 101786106 101786106 C T KIAA1377 Missense_Mutation p.R31W 0.20 deleterious(0) benign(0.097) TCGA-CG-4306-01 11 1025025 1025025 G A MUC6 Missense_Mutation p.T1015M 0.25 unknown(0) TCGA-CG-4306-01 11 108044069 108044069 T - NPAT Frame_Shift_Del p.S548Vfs*11 0.24 TCGA-CG-4306-01 11 1090915 1090915 C A MUC2 Silent p.T1270T 0.25 TCGA-CG-4306-01 11 111941920 111941920 T C PIH1D2 Missense_Mutation p.Q130R 0.21 tolerated(1) benign(0.002) TCGA-CG-4306-01 11 114393133 114393134 - T NXPE1 Frame_Shift_Ins p.H259Tfs*2 0.19 TCGA-CG-4306-01 11 116691981 116691981 G A APOA4 Nonsense_Mutation p.Q265* 0.24 TCGA-CG-4306-01 11 117186283 117186283 C T BACE1 Missense_Mutation p.V77M 0.16 tolerated(0.22) probably_damaging(0.968) TCGA-CG-4306-01 11 117387410 117387410 C T DSCAML1 Missense_Mutation p.G579R 0.19 deleterious(0) probably_damaging(0.988) TCGA-CG-4306-01 11 117651423 117651423 G A DSCAML1 Missense_Mutation p.A110V 0.22 tolerated(0.36) probably_damaging(0.913) TCGA-CG-4306-01 11 118279806 118279806 A G ATP5L Missense_Mutation p.D102G 0.24 deleterious(0.03) benign(0.142) TCGA-CG-4306-01 11 118499199 118499199 C A PHLDB1 Missense_Mutation p.Q554K 0.12 tolerated(0.42) possibly_damaging(0.599) TCGA-CG-4306-01 11 119058114 119058114 C T PDZD3 Missense_Mutation p.R156W 0.18 deleterious(0) probably_damaging(1) TCGA-CG-4306-01 11 119213688 119213688 G - MFRP Frame_Shift_Del p.H384Tfs*94 0.31 TCGA-CG-4306-01 11 120008304 120008304 C T TRIM29 Missense_Mutation p.G146R 0.28 deleterious(0) possibly_damaging(0.835) TCGA-CG-4306-01 11 120350842 120350842 C T ARHGEF12 Missense_Mutation p.P1314S 0.23 tolerated_low_confidence(0.09) benign(0.003) TCGA-CG-4306-01 11 120827592 120827592 G A GRIK4 Missense_Mutation p.G602R 0.26 deleterious(0) probably_damaging(1) TCGA-CG-4306-01 11 122678801 122678801 G A UBASH3B Missense_Mutation p.A577T 0.24 deleterious(0.04) probably_damaging(0.973) TCGA-CG-4306-01 11 122848490 122848490 C T BSX Missense_Mutation p.R190H 0.32 tolerated(0.14) benign(0) TCGA-CG-4306-01 11 124615423 124615423 G A NRGN Missense_Mutation p.D14N 0.19 deleterious(0) unknown(0) TCGA-CG-4306-01 11 124618378 124618378 C T VSIG2 Silent p.V253V 0.24 TCGA-CG-4306-01 11 129754773 129754773 C T NFRKB Silent p.T228T 0.35 TCGA-CG-4306-01 11 130275467 130275467 G A ADAMTS8 Silent p.L886L 0.04 TCGA-CG-4306-01 11 131240692 131240692 A - NTM 5'UTR 0.18 TCGA-CG-4306-01 11 134051038 134051038 G A NCAPD3 Silent p.C831C 0.25 TCGA-CG-4306-01 11 134212846 134212846 G A GLB1L2 Splice_Site p.X95_splice 0.33 TCGA-CG-4306-01 11 14991505 14991505 T A CALCA Missense_Mutation p.Q68L 0.24 tolerated(0.1) benign(0.037) TCGA-CG-4306-01 11 16071413 16071413 C T SOX6 Silent p.T441T 0.21 TCGA-CG-4306-01 11 17741309 17741309 G A MYOD1 5'UTR 0.24 TCGA-CG-4306-01 11 18436832 18436832 G T LDHC Missense_Mutation p.K76N 0.20 tolerated(0.17) possibly_damaging(0.858) TCGA-CG-4306-01 11 1862321 1862321 C T TNNI2 Missense_Mutation p.R113W 0.19 deleterious(0) probably_damaging(0.997) TCGA-CG-4306-01 11 20621136 20621136 C T SLC6A5 5'UTR 0.26 TCGA-CG-4306-01 11 214277 214277 C T RIC8A Missense_Mutation p.T514M 0.21 deleterious(0.01) probably_damaging(0.947) TCGA-CG-4306-01 11 2415337 2415337 T G CD81 Missense_Mutation p.L65R 0.23 deleterious(0) probably_damaging(0.995) TCGA-CG-4306-01 11 27520241 27520241 C T LIN7C Silent p.S183S 0.20 TCGA-CG-4306-01 11 2798261 2798261 A C KCNQ1 Silent p.S577S 0.25 TCGA-CG-4306-01 11 30033563 30033563 A - KCNA4 Frame_Shift_Del p.F221Lfs*21 0.24 TCGA-CG-4306-01 11 31086113 31086113 G T DCDC1 Missense_Mutation p.H832N 0.24 tolerated(0.84) possibly_damaging(0.542) TCGA-CG-4306-01 11 31625347 31625347 C T ELP4 Silent p.H182H 0.22 TCGA-CG-4306-01 11 3249839 3249839 T C MRGPRE Missense_Mutation p.D63G 0.21 tolerated(0.07) possibly_damaging(0.448) TCGA-CG-4306-01 11 35513670 35513670 C - PAMR1 Frame_Shift_Del p.G101Vfs*8 0.24 TCGA-CG-4306-01 11 45948373 45948373 C - GYLTL1B Frame_Shift_Del p.R428Gfs*30 0.25 TCGA-CG-4306-01 11 46407572 46407572 G A CHRM4 Missense_Mutation p.T179M 0.39 deleterious(0) probably_damaging(0.988) TCGA-CG-4306-01 11 46911510 46911510 G - LRP4 Frame_Shift_Del p.Q693Sfs*118 0.27 TCGA-CG-4306-01 11 47196853 47196853 A - ARFGAP2 Frame_Shift_Del p.R93Afs*43 0.20 TCGA-CG-4306-01 11 47640459 47640459 G A MTCH2 Nonsense_Mutation p.R280* 0.24 TCGA-CG-4306-01 11 47732033 47732033 G A AGBL2 Missense_Mutation p.T43M 0.16 tolerated_low_confidence(0.08) benign(0.022) TCGA-CG-4306-01 11 48238570 48238570 G A OR4B1 Missense_Mutation p.S70N 0.03 deleterious(0.01) benign(0.003) TCGA-CG-4306-01 11 48286188 48286188 C A OR4X1 Missense_Mutation p.P259H 0.19 deleterious(0) probably_damaging(0.989) TCGA-CG-4306-01 11 5461995 5461995 C T OR51I1 Silent p.V250V 0.25 TCGA-CG-4306-01 11 55371595 55371596 AG - OR4C11 Frame_Shift_Del p.S85* 0.28 TCGA-CG-4306-01 11 55653610 55653610 A - TRIM51 Frame_Shift_Del p.M144Cfs*15 0.36 TCGA-CG-4306-01 11 56184864 56184864 A G OR5R1 Missense_Mutation p.I282T 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-CG-4306-01 11 57088081 57088081 G T TNKS1BP1 Missense_Mutation p.P67H 0.29 tolerated(0.05) probably_damaging(1) TCGA-CG-4306-01 11 57263584 57263584 G A SLC43A1 Silent p.G204G 0.26 TCGA-CG-4306-01 11 57460087 57460087 C T ZDHHC5 Missense_Mutation p.T222M 0.25 deleterious(0.04) probably_damaging(0.99) TCGA-CG-4306-01 11 57995632 57995632 C T OR10Q1 Missense_Mutation p.R239H 0.22 deleterious(0.02) benign(0.192) TCGA-CG-4306-01 11 57996170 57996170 G A OR10Q1 Missense_Mutation p.R60C 0.25 deleterious(0.04) benign(0.002) TCGA-CG-4306-01 11 5878912 5878912 C T OR52E8 Silent p.T7T 0.19 TCGA-CG-4306-01 11 59564856 59564856 T G STX3 3'UTR 0.28 TCGA-CG-4306-01 11 61291307 61291307 C - SYT7 Frame_Shift_Del p.G375Afs*7 0.27 TCGA-CG-4306-01 11 62156702 62156702 G A ASRGL1 Missense_Mutation p.V197I 0.20 tolerated(0.18) probably_damaging(0.986) TCGA-CG-4306-01 11 62284598 62284598 G A AHNAK Missense_Mutation p.P5764L 0.30 probably_damaging(0.981) TCGA-CG-4306-01 11 63414021 63414021 G A ATL3 Silent p.Y192Y 0.15 TCGA-CG-4306-01 11 63585406 63585406 G A C11orf84 Missense_Mutation p.S86N 0.31 deleterious(0.04) possibly_damaging(0.876) TCGA-CG-4306-01 11 63670244 63670244 C - MARK2 Frame_Shift_Del p.S471Pfs*36 0.37 TCGA-CG-4306-01 11 64697985 64697985 C T PPP2R5B Missense_Mutation p.T272M 0.20 deleterious(0.01) possibly_damaging(0.767) TCGA-CG-4306-01 11 6477697 6477697 C T TRIM3 Missense_Mutation p.R420H 0.32 tolerated(0.26) possibly_damaging(0.568) TCGA-CG-4306-01 11 65144509 65144509 C A SLC25A45 Silent p.R126R 0.24 TCGA-CG-4306-01 11 65365885 65365885 C T MAP3K11 Silent p.P807P 0.27 TCGA-CG-4306-01 11 65390989 65390989 C T PCNXL3 Silent p.F795F 0.23 TCGA-CG-4306-01 11 65836235 65836235 T - SF3B2 3'UTR 0.22 TCGA-CG-4306-01 11 66299295 66299295 G T BBS1 Intron 0.26 TCGA-CG-4306-01 11 66331420 66331420 G A CTSF Missense_Mutation p.S480L 0.43 deleterious(0) probably_damaging(1) TCGA-CG-4306-01 11 66392099 66392099 C T RBM14 Missense_Mutation p.A251V 0.10 deleterious(0.01) possibly_damaging(0.824) TCGA-CG-4306-01 11 67068991 67068991 G A ANKRD13D Missense_Mutation p.V461M 0.18 deleterious(0) probably_damaging(0.999) TCGA-CG-4306-01 11 67379380 67379380 A G NDUFV1 Missense_Mutation p.K365E 0.23 tolerated_low_confidence(0.09) benign(0.05) TCGA-CG-4306-01 11 69488078 69488079 - C ORAOV1 Frame_Shift_Ins p.E21Gfs*8 0.23 TCGA-CG-4306-01 11 70009435 70009435 C T ANO1 Nonsense_Mutation p.R647* 0.19 TCGA-CG-4306-01 11 70183500 70183500 A - PPFIA1 Frame_Shift_Del p.K488Sfs*3 0.22 TCGA-CG-4306-01 11 71939254 71939254 C T INPPL1 Missense_Mutation p.T68M 0.25 deleterious(0) probably_damaging(1) TCGA-CG-4306-01 11 72295930 72295930 C T PDE2A Missense_Mutation p.V449M 0.26 deleterious(0.01) possibly_damaging(0.865) TCGA-CG-4306-01 11 74441890 74441890 G A CHRDL2 Missense_Mutation p.A15V 0.10 tolerated(0.54) benign(0.016) TCGA-CG-4306-01 11 75379314 75379314 G A MAP6 Missense_Mutation p.S34L 0.24 deleterious(0) probably_damaging(0.994) TCGA-CG-4306-01 11 76996214 76996214 G A GDPD4 5'UTR 0.28 TCGA-CG-4306-01 11 77921181 77921181 C T USP35 Silent p.S760S 0.24 TCGA-CG-4306-01 11 788202 788202 C T CEND1 Silent p.L125L 0.27 TCGA-CG-4306-01 11 8248584 8248584 C T LMO1 Silent p.V101V 0.31 TCGA-CG-4306-01 11 82644463 82644463 A - C11orf82 Frame_Shift_Del p.K696Nfs*7 0.20 TCGA-CG-4306-01 11 82877374 82877374 C T PCF11 Nonsense_Mutation p.R479* 0.33 TCGA-CG-4306-01 11 83770433 83770433 C T DLG2 Missense_Mutation p.V282I 0.34 deleterious(0.02) probably_damaging(0.939) TCGA-CG-4306-01 11 88780735 88780735 C T GRM5 Silent p.S102S 0.27 TCGA-CG-4306-01 11 89224436 89224436 C T NOX4 5'UTR 0.29 TCGA-CG-4306-01 11 92533495 92533495 G A FAT3 Missense_Mutation p.R2439Q 0.24 possibly_damaging(0.836) TCGA-CG-4306-01 11 92613994 92613994 C T FAT3 Silent p.C4075C 0.04 TCGA-CG-4306-01 11 93808491 93808491 T - HEPHL1 Frame_Shift_Del p.G553Afs*3 0.18 TCGA-CG-4306-01 11 96117864 96117864 G A CCDC82 Silent p.H16H 0.30 TCGA-CG-4306-01 11 9746422 9746422 T C SWAP70 Missense_Mutation p.V211A 0.28 deleterious(0) possibly_damaging(0.876) TCGA-CG-4306-01 12 1005427 1005427 C T WNK1 Missense_Mutation p.A1925V 0.05 tolerated(0.19) benign(0.028) TCGA-CG-4306-01 12 101801503 101801503 A C ARL1 5'UTR 0.30 TCGA-CG-4306-01 12 1025667 1025667 G A RAD52 Intron 0.35 TCGA-CG-4306-01 12 104705167 104705167 T C TXNRD1 Missense_Mutation p.S172P 0.23 deleterious(0) probably_damaging(0.967) TCGA-CG-4306-01 12 105464436 105464436 T C ALDH1L2 Missense_Mutation p.M114V 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.465) TCGA-CG-4306-01 12 106633328 106633328 G A CKAP4 Missense_Mutation p.A428V 0.26 tolerated(0.07) benign(0.115) TCGA-CG-4306-01 12 106633635 106633635 G A CKAP4 Missense_Mutation p.R326C 0.28 deleterious(0) probably_damaging(0.931) TCGA-CG-4306-01 12 109876365 109876365 G A MYO1H Missense_Mutation p.R729H 0.33 deleterious(0.04) probably_damaging(0.999) TCGA-CG-4306-01 12 111779614 111779614 G A CUX2 Missense_Mutation p.S1139N 0.22 deleterious(0.03) benign(0.053) TCGA-CG-4306-01 12 112121078 112121078 G A BRAP Missense_Mutation p.T39M 0.28 tolerated(0.11) benign(0.003) TCGA-CG-4306-01 12 112182668 112182668 C T ACAD10 Missense_Mutation p.H677Y 0.24 tolerated(1) benign(0.301) TCGA-CG-4306-01 12 112221101 112221101 C T RP11-162P23.2 Missense_Mutation p.A117V 0.17 deleterious(0) benign(0.445) TCGA-CG-4306-01 12 113758221 113758223 GAA - SLC8B1 In_Frame_Del p.F203del 0.39 TCGA-CG-4306-01 12 113821994 113821994 C T PLBD2 Missense_Mutation p.R348C 0.23 deleterious(0) probably_damaging(1) TCGA-CG-4306-01 12 118636867 118636867 C T TAOK3 Missense_Mutation p.V395M 0.19 tolerated(0.07) benign(0.06) TCGA-CG-4306-01 12 118852224 118852224 C T SUDS3 Missense_Mutation p.R325C 0.35 deleterious(0) probably_damaging(0.987) TCGA-CG-4306-01 12 120128233 120128233 G A CIT Missense_Mutation p.T1970M 0.31 deleterious_low_confidence(0) possibly_damaging(0.509) TCGA-CG-4306-01 12 120591043 120591043 C T GCN1L1 Missense_Mutation p.A1346T 0.20 benign(0.002) TCGA-CG-4306-01 12 121134157 121134158 - AAG MLEC In_Frame_Ins p.E238dup 0.20 TCGA-CG-4306-01 12 121666642 121666643 AC - P2RX4 Frame_Shift_Del p.H257Qfs*44 0.24 TCGA-CG-4306-01 12 121867839 121867841 TCT - KDM2B 3'UTR 0.24 TCGA-CG-4306-01 12 123286259 123286259 A G CCDC62 Missense_Mutation p.I522M 0.26 deleterious(0) possibly_damaging(0.89) TCGA-CG-4306-01 12 123741554 123741554 G T C12orf65 Missense_Mutation p.W159C 0.20 tolerated(0.1) unknown(0) TCGA-CG-4306-01 12 124102324 124102324 G A DDX55 Missense_Mutation p.G357S 0.18 deleterious(0) probably_damaging(1) TCGA-CG-4306-01 12 124812140 124812140 G A NCOR2 Missense_Mutation p.A2333V 0.15 possibly_damaging(0.688) TCGA-CG-4306-01 12 125292364 125292364 C T SCARB1 Missense_Mutation p.E318K 0.28 tolerated(0.24) benign(0.212) TCGA-CG-4306-01 12 125509930 125509930 G A BRI3BP Missense_Mutation p.R237H 0.21 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-CG-4306-01 12 126137090 126137090 T C TMEM132B Missense_Mutation p.M668T 0.22 deleterious(0) benign(0.056) TCGA-CG-4306-01 12 129383782 129383782 T G GLT1D1 Missense_Mutation p.F109V 0.22 deleterious(0) possibly_damaging(0.504) TCGA-CG-4306-01 12 130184752 130184752 G A TMEM132D Silent p.L191L 0.26 TCGA-CG-4306-01 12 131569208 131569208 G T GPR133 Missense_Mutation p.E557D 0.06 deleterious(0.01) benign(0.045) TCGA-CG-4306-01 12 132394519 132394519 C T ULK1 Missense_Mutation p.R261C 0.16 deleterious(0) probably_damaging(0.997) TCGA-CG-4306-01 12 133195509 133195509 T C P2RX2 Missense_Mutation p.V36A 0.26 tolerated(0.6) probably_damaging(0.999) TCGA-CG-4306-01 12 133257271 133257271 G A POLE Silent p.T69T 0.23 TCGA-CG-4306-01 12 133732700 133732701 - A ZNF10 Frame_Shift_Ins p.P292Tfs*3 0.23 TCGA-CG-4306-01 12 14940008 14940008 C A WBP11 Silent p.G639G 0.17 TCGA-CG-4306-01 12 27235417 27235417 G T C12orf71 5'UTR 0.22 TCGA-CG-4306-01 12 29904657 29904657 G A TMTC1 Missense_Mutation p.P294S 0.31 tolerated(0.58) benign(0.001) TCGA-CG-4306-01 12 31540480 31540480 C T DENND5B 3'UTR 0.25 TCGA-CG-4306-01 12 3939057 3939057 T C PARP11 Missense_Mutation p.Q49R 0.18 deleterious(0.01) benign(0.39) TCGA-CG-4306-01 12 46322094 46322094 A G SCAF11 Missense_Mutation p.Y464H 0.27 tolerated(1) benign(0) TCGA-CG-4306-01 12 48192418 48192418 C T HDAC7 Silent p.P92P 0.18 TCGA-CG-4306-01 12 49237796 49237796 G A DDX23 Missense_Mutation p.R83W 0.25 deleterious_low_confidence(0) unknown(0) TCGA-CG-4306-01 12 50025258 50025258 C - PRPF40B Frame_Shift_Del p.M56Cfs*29 0.34 TCGA-CG-4306-01 12 51458168 51458168 C A CSRNP2 Missense_Mutation p.E331D 0.26 tolerated(0.13) possibly_damaging(0.648) TCGA-CG-4306-01 12 52380736 52380736 T - ACVR1B Intron 0.24 TCGA-CG-4306-01 12 52910981 52910981 G A KRT5 Silent p.G376G 0.25 TCGA-CG-4306-01 12 52913894 52913894 G A KRT5 Missense_Mutation p.R63W 0.20 deleterious(0) probably_damaging(0.982) TCGA-CG-4306-01 12 53899445 53899445 C T TARBP2 Missense_Mutation p.R252C 0.21 deleterious(0.01) possibly_damaging(0.714) TCGA-CG-4306-01 12 53928408 53928408 G - ATF7 Frame_Shift_Del p.T147Hfs*112 0.24 TCGA-CG-4306-01 12 54396222 54396222 G A HOXC9 Missense_Mutation p.V183M 0.24 deleterious(0) possibly_damaging(0.806) TCGA-CG-4306-01 12 54674568 54674569 AA - HNRNPA1 5'UTR 0.32 TCGA-CG-4306-01 12 54925281 54925281 G C NCKAP1L Missense_Mutation p.V871L 0.26 deleterious(0) benign(0.14) TCGA-CG-4306-01 12 55714547 55714547 C T OR6C1 Missense_Mutation p.T55I 0.17 deleterious_low_confidence(0.02) benign(0.157) TCGA-CG-4306-01 12 55820730 55820730 A - OR6C76 Frame_Shift_Del p.A234Pfs*9 0.22 TCGA-CG-4306-01 12 56575376 56575376 G A SMARCC2 Silent p.N282N 0.20 TCGA-CG-4306-01 12 56814799 56814799 C A TIMELESS Missense_Mutation p.Q996H 0.22 tolerated(0.26) benign(0.004) TCGA-CG-4306-01 12 57574480 57574480 C T LRP1 Missense_Mutation p.S1806L 0.21 benign(0.242) TCGA-CG-4306-01 12 58006825 58006825 C - ARHGEF25 Frame_Shift_Del p.P111Qfs*7 0.37 TCGA-CG-4306-01 12 6425053 6425053 C T PLEKHG6 Silent p.L192L 0.36 TCGA-CG-4306-01 12 64615816 64615816 A C C12orf66 Missense_Mutation p.Y68D 0.22 deleterious(0.01) possibly_damaging(0.767) TCGA-CG-4306-01 12 64615836 64615836 A C C12orf66 Missense_Mutation p.L61R 0.32 deleterious(0) possibly_damaging(0.863) TCGA-CG-4306-01 12 64841986 64841986 A G XPOT 3'UTR 0.27 TCGA-CG-4306-01 12 65639549 65639549 C T LEMD3 Missense_Mutation p.R830C 0.23 deleterious(0) benign(0.342) TCGA-CG-4306-01 12 72038781 72038781 T - ZFC3H1 Frame_Shift_Del p.K385Nfs*9 0.30 TCGA-CG-4306-01 12 7254397 7254397 T C C1RL Intron 0.23 TCGA-CG-4306-01 12 75692742 75692742 C T CAPS2 Missense_Mutation p.G306R 0.21 deleterious(0) probably_damaging(0.997) TCGA-CG-4306-01 12 80750687 80750687 T - OTOGL Frame_Shift_Del p.C1997Vfs*21 0.18 TCGA-CG-4306-01 12 86374168 86374168 T - MGAT4C Frame_Shift_Del p.G113Efs*20 0.29 TCGA-CG-4306-01 12 88477714 88477714 C T CEP290 Silent p.V1574V 0.24 TCGA-CG-4306-01 12 90028897 90028898 - T ATP2B1 Frame_Shift_Ins p.Q180Tfs*3 0.20 TCGA-CG-4306-01 12 9094486 9094486 T A M6PR Silent p.A254A 0.23 TCGA-CG-4306-01 12 9349220 9349220 G A PZP Missense_Mutation p.T310M 0.25 tolerated(0.08) benign(0.001) TCGA-CG-4306-01 12 96692660 96692660 T G CDK17 Silent p.T234T 0.23 TCGA-CG-4306-01 12 98849769 98849769 G A SLC9A7P1 RNA 0.31 TCGA-CG-4306-01 13 101720335 101720335 G A NALCN Missense_Mutation p.L1461F 0.23 deleterious(0) probably_damaging(0.994) TCGA-CG-4306-01 13 111077160 111077160 A G COL4A2 Missense_Mutation p.K87R 0.20 possibly_damaging(0.789) TCGA-CG-4306-01 13 113834514 113834514 T - PCID2 Frame_Shift_Del p.K327Sfs*4 0.28 TCGA-CG-4306-01 13 113974719 113974719 C T LAMP1 Silent p.G270G 0.15 TCGA-CG-4306-01 13 114535710 114535710 C T GAS6 Missense_Mutation p.V284M 0.24 tolerated(0.1) probably_damaging(0.996) TCGA-CG-4306-01 13 24465712 24465713 - C C1QTNF9B Frame_Shift_Ins p.K240Efs*45 0.23 TCGA-CG-4306-01 13 25262530 25262530 C T ATP12A Missense_Mutation p.T101M 0.25 deleterious(0) probably_damaging(0.938) TCGA-CG-4306-01 13 25265317 25265317 C A ATP12A Missense_Mutation p.L339M 0.35 deleterious(0) probably_damaging(0.941) TCGA-CG-4306-01 13 25266681 25266681 A G ATP12A Missense_Mutation p.T401A 0.26 deleterious(0) probably_damaging(0.997) TCGA-CG-4306-01 13 25362211 25362211 A - RNF17 Frame_Shift_Del p.N235Ifs*3 0.31 TCGA-CG-4306-01 13 25478079 25478079 G A CENPJ Missense_Mutation p.A937V 0.20 deleterious(0) possibly_damaging(0.597) TCGA-CG-4306-01 13 27260050 27260050 T C WASF3 3'UTR 0.38 TCGA-CG-4306-01 13 27260071 27260071 G T WASF3 3'UTR 0.40 TCGA-CG-4306-01 13 27845850 27845850 G A RASL11A Missense_Mutation p.V86I 0.24 tolerated(0.73) benign(0.002) TCGA-CG-4306-01 13 30341433 30341433 G A UBL3 Missense_Mutation p.R105C 0.23 deleterious(0) probably_damaging(0.93) TCGA-CG-4306-01 13 31712653 31712653 G T HSPH1 Missense_Mutation p.S754Y 0.26 tolerated(1) benign(0.309) TCGA-CG-4306-01 13 33685010 33685010 G A STARD13 Missense_Mutation p.S881L 0.30 deleterious(0) benign(0.229) TCGA-CG-4306-01 13 36700288 36700288 T C DCLK1 5'UTR 0.06 TCGA-CG-4306-01 13 41381560 41381560 C A SLC25A15 Silent p.R195R 0.26 TCGA-CG-4306-01 13 41941577 41941577 T - NAA16 Frame_Shift_Del p.F516Lfs*3 0.26 TCGA-CG-4306-01 13 46541933 46541933 G A ZC3H13 Nonsense_Mutation p.R1343* 0.20 TCGA-CG-4306-01 13 47316077 47316077 C A LRCH1 3'UTR 0.27 TCGA-CG-4306-01 13 52035095 52035095 G A RPS4XP16 RNA 0.17 TCGA-CG-4306-01 13 52439918 52439918 T G CCDC70 Missense_Mutation p.F135C 0.17 deleterious(0) probably_damaging(0.999) TCGA-CG-4306-01 13 52603136 52603136 G T UTP14C Missense_Mutation p.A66S 0.22 deleterious(0.01) probably_damaging(0.988) TCGA-CG-4306-01 13 79940835 79940836 - G RBM26 Frame_Shift_Ins p.P357Tfs*73 0.27 TCGA-CG-4306-01 13 84455202 84455202 C G SLITRK1 Silent p.P147P 0.20 TCGA-CG-4306-01 13 95735449 95735449 A - ABCC4 Frame_Shift_Del p.L878Ffs*12 0.18 TCGA-CG-4306-01 13 96536762 96536762 T C UGGT2 Missense_Mutation p.N1071D 0.33 deleterious(0) probably_damaging(1) TCGA-CG-4306-01 14 100405583 100405583 G T EML1 Silent p.R766R 0.25 TCGA-CG-4306-01 14 103435030 103435030 C T CDC42BPB Silent p.A673A 0.27 TCGA-CG-4306-01 14 104378853 104378853 T C C14orf2 3'UTR 0.23 TCGA-CG-4306-01 14 105634420 105634420 C T JAG2 Missense_Mutation p.E31K 0.39 deleterious(0) benign(0.257) TCGA-CG-4306-01 14 20216082 20216082 C A OR4Q3 Missense_Mutation p.Q166K 0.09 tolerated(0.11) benign(0.218) TCGA-CG-4306-01 14 22938326 22938326 C T TRDV3 Silent p.T16T 0.33 TCGA-CG-4306-01 14 23467754 23467754 C T C14orf93 Missense_Mutation p.R160Q 0.15 deleterious_low_confidence(0.04) benign(0.017) TCGA-CG-4306-01 14 23745515 23745515 G A HOMEZ Missense_Mutation p.P308S 0.28 tolerated_low_confidence(0.23) benign(0.007) TCGA-CG-4306-01 14 23898213 23898213 C T MYH7 Missense_Mutation p.R453H 0.20 deleterious(0) probably_damaging(0.996) TCGA-CG-4306-01 14 24036397 24036397 C - AP1G2 Frame_Shift_Del p.D43Tfs*30 0.33 TCGA-CG-4306-01 14 24523631 24523631 G T LRRC16B Missense_Mutation p.M91I 0.24 tolerated(0.11) benign(0.014) TCGA-CG-4306-01 14 24877215 24877215 C - NYNRIN Frame_Shift_Del p.P115Lfs*4 0.20 TCGA-CG-4306-01 14 26917185 26917185 T C NOVA1 Missense_Mutation p.N502D 0.27 deleterious(0.01) probably_damaging(0.958) TCGA-CG-4306-01 14 37838737 37838737 C T MIPOL1 Nonsense_Mutation p.Q282* 0.26 TCGA-CG-4306-01 14 39868689 39868689 G A FBXO33 3'UTR 0.23 TCGA-CG-4306-01 14 50734531 50734531 C T L2HGDH Missense_Mutation p.R335Q 0.19 deleterious(0.02) probably_damaging(1) TCGA-CG-4306-01 14 58817949 58817949 A - ARID4A Frame_Shift_Del p.N523Ifs*52 0.23 TCGA-CG-4306-01 14 59951744 59951744 A - JKAMP Intron 0.25 TCGA-CG-4306-01 14 64488030 64488030 C G SYNE2 Intron 0.16 TCGA-CG-4306-01 14 64653220 64653220 G A SYNE2 Missense_Mutation p.V5879I 0.23 benign(0.003) TCGA-CG-4306-01 14 65035126 65035126 A - PPP1R36 Frame_Shift_Del p.N167Tfs*12 0.16 TCGA-CG-4306-01 14 67862233 67862233 C T PLEK2 Missense_Mutation p.R92Q 0.24 deleterious(0) probably_damaging(1) TCGA-CG-4306-01 14 70238228 70238228 A - SRSF5 3'UTR 0.25 TCGA-CG-4306-01 14 72056033 72056033 G A SIPA1L1 Missense_Mutation p.V482M 0.29 deleterious(0) probably_damaging(0.991) TCGA-CG-4306-01 14 75078312 75078312 C T LTBP2 Silent p.S112S 0.19 TCGA-CG-4306-01 14 76219283 76219283 G A TTLL5 Missense_Mutation p.R512H 0.27 tolerated(0.05) benign(0.104) TCGA-CG-4306-01 14 80993231 80993231 G A CEP128 Silent p.Y1018Y 0.29 TCGA-CG-4306-01 14 81743374 81743374 C - STON2 Frame_Shift_Del p.A761Qfs*15 0.22 TCGA-CG-4306-01 14 86089507 86089507 C T FLRT2 Missense_Mutation p.A550V 0.22 tolerated(0.08) possibly_damaging(0.762) TCGA-CG-4306-01 14 91142956 91142956 G A TTC7B Missense_Mutation p.R355C 0.26 deleterious(0) benign(0.167) TCGA-CG-4306-01 14 92920308 92920308 C T SLC24A4 Silent p.S315S 0.20 TCGA-CG-4306-01 14 94173133 94173133 G A UNC79 Silent p.S2420S 0.25 TCGA-CG-4306-01 15 102294425 102294425 A G DNM1P47 RNA 0.21 TCGA-CG-4306-01 15 22473065 22473065 C T IGHV4OR15-8 Missense_Mutation p.G69E 0.05 deleterious(0.01) probably_damaging(0.995) TCGA-CG-4306-01 15 22872545 22872545 A G TUBGCP5 Intron 0.21 TCGA-CG-4306-01 15 25959016 25959016 G A ATP10A Missense_Mutation p.R717W 0.25 deleterious(0) probably_damaging(0.998) TCGA-CG-4306-01 15 28230313 28230313 G A OCA2 Missense_Mutation p.R421W 0.28 deleterious(0) probably_damaging(0.992) TCGA-CG-4306-01 15 28386591 28386591 G A HERC2 Missense_Mutation p.T4001M 0.21 probably_damaging(1) TCGA-CG-4306-01 15 28482137 28482137 C T HERC2 Silent p.P1325P 0.28 TCGA-CG-4306-01 15 30092850 30092850 C A TJP1 Missense_Mutation p.R28M 0.19 deleterious(0) benign(0.13) TCGA-CG-4306-01 15 34040421 34040421 G A RYR3 Missense_Mutation p.R2699Q 0.26 benign(0.027) TCGA-CG-4306-01 15 34642991 34642991 C T NUTM1 Missense_Mutation p.T271I 0.28 deleterious(0.03) possibly_damaging(0.823) TCGA-CG-4306-01 15 41191772 41191772 G A VPS18 Silent p.T252T 0.26 TCGA-CG-4306-01 15 41277580 41277580 G A INO80 Nonsense_Mutation p.R1293* 0.23 TCGA-CG-4306-01 15 42105142 42105142 G A MAPKBP1 Missense_Mutation p.G221D 0.24 deleterious(0) probably_damaging(0.999) TCGA-CG-4306-01 15 42134087 42134087 T A PLA2G4B Silent p.T418T 0.15 TCGA-CG-4306-01 15 43028259 43028259 C A CDAN1 Missense_Mutation p.R196M 0.23 deleterious(0) probably_damaging(0.989) TCGA-CG-4306-01 15 43675579 43675579 T C TUBGCP4 Silent p.H200H 0.27 TCGA-CG-4306-01 15 43815140 43815140 G A MAP1A Missense_Mutation p.R490H 0.23 probably_damaging(0.921) TCGA-CG-4306-01 15 45409435 45409435 C T DUOXA2 Missense_Mutation p.P234L 0.13 tolerated(0.16) benign(0.135) TCGA-CG-4306-01 15 45660384 45660384 G A GATM Missense_Mutation p.R187C 0.29 deleterious(0) probably_damaging(1) TCGA-CG-4306-01 15 48052032 48052032 C T SEMA6D Silent p.L13L 0.20 TCGA-CG-4306-01 15 48782150 48782150 C T FBN1 Missense_Mutation p.E994K 0.25 benign(0.001) TCGA-CG-4306-01 15 49907322 49907322 G T FAM227B Missense_Mutation p.P16H 0.23 tolerated_low_confidence(0.08) possibly_damaging(0.723) TCGA-CG-4306-01 15 50474821 50474821 C T SLC27A2 Missense_Mutation p.T66M 0.21 tolerated(0.22) benign(0.21) TCGA-CG-4306-01 15 50570857 50570857 C T GABPB1 Missense_Mutation p.R387H 0.19 tolerated_low_confidence(0.17) benign(0.001) TCGA-CG-4306-01 15 52011689 52011689 C T SCG3 Missense_Mutation p.A458V 0.20 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-CG-4306-01 15 55971645 55971645 T C PRTG Splice_Site p.X325_splice 0.21 TCGA-CG-4306-01 15 56386864 56386864 C A RFX7 Missense_Mutation p.R1021M 0.20 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CG-4306-01 15 57839834 57839834 C A CGNL1 3'UTR 0.20 TCGA-CG-4306-01 15 59080107 59080107 G A FAM63B Silent p.V281V 0.19 TCGA-CG-4306-01 15 60297902 60297902 C T FOXB1 Missense_Mutation p.P247L 0.21 deleterious(0.01) benign(0.028) TCGA-CG-4306-01 15 63004189 63004189 C T TLN2 Silent p.A849A 0.14 TCGA-CG-4306-01 15 63433525 63433525 G A LACTB Missense_Mutation p.V389M 0.27 deleterious(0) probably_damaging(0.999) TCGA-CG-4306-01 15 63918223 63918223 G A HERC1 Silent p.Y4412Y 0.29 TCGA-CG-4306-01 15 64419453 64419453 T C SNX1 Splice_Site p.X244_splice 0.32 TCGA-CG-4306-01 15 64506165 64506165 T - CSNK1G1 Frame_Shift_Del p.K201Nfs*11 0.25 TCGA-CG-4306-01 15 64980884 64980884 A - OAZ2 3'UTR 0.20 TCGA-CG-4306-01 15 65621217 65621217 G A IGDCC3 3'UTR 0.17 TCGA-CG-4306-01 15 66161866 66161867 - C RAB11A 5'UTR 0.25 TCGA-CG-4306-01 15 66845477 66845477 A G LCTL Missense_Mutation p.Y348H 0.26 deleterious(0) probably_damaging(0.991) TCGA-CG-4306-01 15 70961645 70961645 G A UACA Nonsense_Mutation p.R460* 0.21 TCGA-CG-4306-01 15 73418762 73418762 T C NEO1 Silent p.P243P 0.25 TCGA-CG-4306-01 15 75189279 75189279 C T MPI Intron 0.24 TCGA-CG-4306-01 15 81631013 81631013 G A TMC3 Silent p.P688P 0.17 TCGA-CG-4306-01 15 82336392 82336392 C T MEX3B Silent p.T273T 0.41 TCGA-CG-4306-01 15 83735743 83735743 G A BTBD1 Missense_Mutation p.S54L 0.20 deleterious(0) benign(0.154) TCGA-CG-4306-01 15 83932566 83932566 A - BNC1 Frame_Shift_Del p.N481Tfs*2 0.19 TCGA-CG-4306-01 15 85165401 85165401 T G ZSCAN2 3'UTR 0.29 TCGA-CG-4306-01 15 85345662 85345662 C T ZNF592 3'UTR 0.23 TCGA-CG-4306-01 15 86278855 86278855 A - AKAP13 Frame_Shift_Del p.K2508Rfs*50 0.23 TCGA-CG-4306-01 15 86838491 86838491 T C AGBL1 Silent p.H696H 0.21 TCGA-CG-4306-01 15 89074530 89074530 T C DET1 Missense_Mutation p.N147S 0.17 tolerated(0.77) benign(0.004) TCGA-CG-4306-01 15 90346503 90346503 G A ANPEP Silent p.T512T 0.18 TCGA-CG-4306-01 15 91346819 91346819 G A BLM Missense_Mutation p.E1143K 0.21 deleterious(0) probably_damaging(0.997) TCGA-CG-4306-01 15 99434589 99434589 G A IGF1R Missense_Mutation p.E226K 0.23 tolerated(0.9) benign(0.028) TCGA-CG-4306-01 15 99670476 99670476 C T SYNM Silent p.T636T 0.13 TCGA-CG-4306-01 16 12061469 12061469 G A TNFRSF17 Missense_Mutation p.S107N 0.15 tolerated(0.19) benign(0.002) TCGA-CG-4306-01 16 1396487 1396487 G A BAIAP3 Silent p.S881S 0.30 TCGA-CG-4306-01 16 14340930 14340931 - A MKL2 Frame_Shift_Ins p.R607Tfs*35 0.26 TCGA-CG-4306-01 16 15204314 15204314 G A RP11-1186N24.5 RNA 0.28 TCGA-CG-4306-01 16 16251627 16251628 - G ABCC6 Frame_Shift_Ins p.W1259Lfs*19 0.21 TCGA-CG-4306-01 16 1867196 1867196 C A HAGH Missense_Mutation p.E206D 0.16 tolerated(0.13) benign(0.003) TCGA-CG-4306-01 16 18844470 18844470 G A SMG1 Missense_Mutation p.R2862W 0.18 deleterious(0) probably_damaging(0.99) TCGA-CG-4306-01 16 19195148 19195148 C T SYT17 Silent p.D210D 0.04 TCGA-CG-4306-01 16 19501878 19501878 C A TMC5 Missense_Mutation p.T912N 0.24 deleterious(0) probably_damaging(0.973) TCGA-CG-4306-01 16 19729613 19729613 C A IQCK 5'UTR 0.27 TCGA-CG-4306-01 16 20482476 20482476 T C ACSM2A Silent p.G226G 0.26 TCGA-CG-4306-01 16 20975756 20975756 T C DNAH3 Silent p.Q3150Q 0.25 TCGA-CG-4306-01 16 21416178 21416178 G T NPIPB3 Missense_Mutation p.P177H 0.08 probably_damaging(0.998) TCGA-CG-4306-01 16 21854828 21854828 C T NPIPB4 Missense_Mutation p.V142I 0.12 benign(0.293) TCGA-CG-4306-01 16 22826074 22826074 G A HS3ST2 Missense_Mutation p.R48H 0.18 tolerated(0.15) benign(0.142) TCGA-CG-4306-01 16 2487153 2487153 G A CCNF Missense_Mutation p.A124T 0.27 deleterious(0.02) probably_damaging(0.97) TCGA-CG-4306-01 16 2577820 2577820 G A AMDHD2 Silent p.A154A 0.40 TCGA-CG-4306-01 16 27514179 27514179 C T GTF3C1 Splice_Site p.X636_splice 0.33 TCGA-CG-4306-01 16 28167579 28167579 G A XPO6 Missense_Mutation p.R305C 0.27 deleterious(0.04) benign(0.004) TCGA-CG-4306-01 16 2818182 2818182 G C SRRM2 Silent p.S2551S 0.18 TCGA-CG-4306-01 16 29841818 29841818 G A MVP Intron 0.29 TCGA-CG-4306-01 16 30662942 30662942 C - PRR14 5'UTR 0.26 TCGA-CG-4306-01 16 31106893 31106893 G A VKORC1 5'Flank 0.14 TCGA-CG-4306-01 16 31151860 31151860 G - PRSS36 Frame_Shift_Del p.P707Rfs*26 0.24 TCGA-CG-4306-01 16 3140201 3140201 G A ZSCAN10 Missense_Mutation p.R357C 0.21 tolerated(0.09) probably_damaging(0.976) TCGA-CG-4306-01 16 31434704 31434704 T C ITGAD Missense_Mutation p.I964T 0.30 deleterious(0.03) benign(0.309) TCGA-CG-4306-01 16 3487250 3487250 T A ZNF597 Missense_Mutation p.E150V 0.26 deleterious(0.03) benign(0.046) TCGA-CG-4306-01 16 3558347 3558347 C T CLUAP1 Missense_Mutation p.A93V 0.04 deleterious(0) probably_damaging(0.991) TCGA-CG-4306-01 16 4308193 4308193 G A TFAP4 Nonsense_Mutation p.R294* 0.20 TCGA-CG-4306-01 16 48174686 48174686 G A ABCC12 Missense_Mutation p.T190M 0.26 deleterious(0.02) possibly_damaging(0.898) TCGA-CG-4306-01 16 50667286 50667286 G A NKD1 Missense_Mutation p.R336Q 0.28 deleterious(0.04) possibly_damaging(0.496) TCGA-CG-4306-01 16 53358011 53358011 G A CHD9 Missense_Mutation p.R2617Q 0.21 unknown(0) TCGA-CG-4306-01 16 54966352 54966352 C T IRX5 Intron 0.19 TCGA-CG-4306-01 16 56485017 56485017 A C NUDT21 Missense_Mutation p.L33R 0.16 tolerated(0.05) benign(0.024) TCGA-CG-4306-01 16 56536265 56536265 C T BBS2 Silent p.L348L 0.26 TCGA-CG-4306-01 16 57416231 57416231 G A CX3CL1 Missense_Mutation p.V161M 0.28 deleterious(0.03) benign(0.05) TCGA-CG-4306-01 16 57760170 57760170 C T CCDC135 Missense_Mutation p.T650M 0.14 deleterious(0.05) possibly_damaging(0.618) TCGA-CG-4306-01 16 58296349 58296349 G A CCDC113 Missense_Mutation p.A230T 0.03 deleterious(0.05) possibly_damaging(0.7) TCGA-CG-4306-01 16 58589340 58589340 A - CNOT1 Frame_Shift_Del p.Q904Sfs*9 0.20 TCGA-CG-4306-01 16 65005898 65005898 T A CDH11 Missense_Mutation p.K487M 0.11 deleterious(0.01) benign(0.254) TCGA-CG-4306-01 16 66612941 66612941 C T CMTM1 3'UTR 0.25 TCGA-CG-4306-01 16 66948222 66948222 G A CDH16 Missense_Mutation p.T226I 0.11 tolerated(0.37) benign(0.007) TCGA-CG-4306-01 16 67184159 67184159 G A B3GNT9 Missense_Mutation p.T77M 0.23 tolerated(0.25) probably_damaging(0.994) TCGA-CG-4306-01 16 675439 675439 T G RAB40C Missense_Mutation p.L91R 0.16 deleterious(0) probably_damaging(0.998) TCGA-CG-4306-01 16 67692931 67692931 T C ACD Missense_Mutation p.Q268R 0.22 tolerated(1) benign(0.007) TCGA-CG-4306-01 16 68104974 68104974 G A DUS2 Missense_Mutation p.R258Q 0.27 tolerated(0.08) benign(0.006) TCGA-CG-4306-01 16 69364973 69364974 - T COG8 Frame_Shift_Ins p.Y537Vfs*3 0.26 TCGA-CG-4306-01 16 69782198 69782198 G A NOB1 Missense_Mutation p.A254V 0.25 deleterious(0) possibly_damaging(0.509) TCGA-CG-4306-01 16 70514920 70514920 C T COG4 Missense_Mutation p.R788H 0.23 deleterious(0) benign(0.005) TCGA-CG-4306-01 16 70693588 70693588 A T IL34 Missense_Mutation p.K157M 0.19 deleterious(0) probably_damaging(0.996) TCGA-CG-4306-01 16 70697624 70697624 G A MTSS1L Missense_Mutation p.R734C 0.36 deleterious(0) possibly_damaging(0.855) TCGA-CG-4306-01 16 71715761 71715761 G A PHLPP2 Silent p.L261L 0.24 TCGA-CG-4306-01 16 732348 732350 CTT - JMJD8 3'UTR 0.32 TCGA-CG-4306-01 16 74976648 74976648 T C WDR59 Missense_Mutation p.I174M 0.25 deleterious(0) probably_damaging(0.951) TCGA-CG-4306-01 16 75681991 75681991 C T TERF2IP Silent p.L71L 0.27 TCGA-CG-4306-01 16 7703854 7703854 C T RBFOX1 Silent p.A285A 0.21 TCGA-CG-4306-01 16 80718806 80718806 C T CDYL2 Missense_Mutation p.R82Q 0.26 deleterious(0.02) benign(0.387) TCGA-CG-4306-01 16 81211460 81211460 C T PKD1L2 Intron 0.19 TCGA-CG-4306-01 16 86601603 86601603 C T FOXC2 Missense_Mutation p.A221V 0.29 tolerated(0.16) benign(0.041) TCGA-CG-4306-01 16 87445714 87445714 C T ZCCHC14 Silent p.A734A 0.12 TCGA-CG-4306-01 16 88643530 88643530 C T ZC3H18 5'UTR 0.14 TCGA-CG-4306-01 16 8889880 8889880 G A TMEM186 Silent p.L191L 0.23 TCGA-CG-4306-01 16 88931440 88931440 G A PABPN1L Missense_Mutation p.H186Y 0.31 deleterious(0) possibly_damaging(0.778) TCGA-CG-4306-01 16 89783024 89783024 G A VPS9D1 Missense_Mutation p.R93C 0.24 tolerated(0.21) benign(0) TCGA-CG-4306-01 16 89789790 89789790 G A ZNF276 Missense_Mutation p.V227I 0.29 tolerated(1) benign(0.009) TCGA-CG-4306-01 16 90001343 90001343 C T TUBB3 Missense_Mutation p.R162C 0.22 deleterious_low_confidence(0.02) probably_damaging(0.995) TCGA-CG-4306-01 16 90095641 90095641 C T C16orf3 Missense_Mutation p.C37Y 0.22 tolerated_low_confidence(0.54) possibly_damaging(0.588) TCGA-CG-4306-01 17 10216027 10216027 G A MYH13 Missense_Mutation p.T1410M 0.29 deleterious(0.01) possibly_damaging(0.519) TCGA-CG-4306-01 17 10360811 10360811 A G MYH4 Missense_Mutation p.V608A 0.25 deleterious(0.01) possibly_damaging(0.722) TCGA-CG-4306-01 17 1183346 1183346 C T TUSC5 Silent p.S17S 0.20 TCGA-CG-4306-01 17 1248762 1248762 G A YWHAE Silent p.D249D 0.22 TCGA-CG-4306-01 17 1359408 1359408 C T CRK Missense_Mutation p.A2T 0.27 tolerated(0.1) benign(0.014) TCGA-CG-4306-01 17 16075241 16075241 A G NCOR1 Missense_Mutation p.L104P 0.22 probably_damaging(0.999) TCGA-CG-4306-01 17 18140801 18140801 G A LLGL1 Missense_Mutation p.V540I 0.28 tolerated(0.19) benign(0.012) TCGA-CG-4306-01 17 18880290 18880290 G A SLC5A10 Missense_Mutation p.A324T 0.23 deleterious(0.05) possibly_damaging(0.49) TCGA-CG-4306-01 17 19458975 19458976 - A SLC47A1 Frame_Shift_Ins p.L240Tfs*39 0.23 TCGA-CG-4306-01 17 19641649 19641649 G - ALDH3A1 Frame_Shift_Del p.P445Rfs*6 0.29 TCGA-CG-4306-01 17 19685239 19685239 C T ULK2 Missense_Mutation p.V868M 0.16 deleterious(0.01) possibly_damaging(0.795) TCGA-CG-4306-01 17 20354922 20354922 C T LGALS9B Missense_Mutation p.A265T 0.14 tolerated(0.06) probably_damaging(0.948) TCGA-CG-4306-01 17 20356361 20356361 G A LGALS9B Missense_Mutation p.T199M 0.28 tolerated(0.06) benign(0.197) TCGA-CG-4306-01 17 2579802 2579802 A - PAFAH1B1 Frame_Shift_Del p.S304Vfs*29 0.26 TCGA-CG-4306-01 17 26960634 26960634 C T KIAA0100 Missense_Mutation p.R1133H 0.22 deleterious(0) probably_damaging(1) TCGA-CG-4306-01 17 26961600 26961600 G - KIAA0100 Frame_Shift_Del p.P1002Lfs*4 0.31 TCGA-CG-4306-01 17 27899562 27899562 C T TP53I13 Missense_Mutation p.R306C 0.29 deleterious(0) probably_damaging(1) TCGA-CG-4306-01 17 30814545 30814545 G A CDK5R1 5'UTR 0.44 TCGA-CG-4306-01 17 33464048 33464048 C T NLE1 Missense_Mutation p.R267H 0.17 deleterious(0.02) possibly_damaging(0.77) TCGA-CG-4306-01 17 33963434 33963434 A G AP2B1 Silent p.A410A 0.22 TCGA-CG-4306-01 17 34171771 34171771 C T TAF15 Nonsense_Mutation p.R490* 0.16 TCGA-CG-4306-01 17 34964141 34964141 G A MRM1 Silent p.T224T 0.27 TCGA-CG-4306-01 17 37343783 37343783 C T CACNB1 Silent p.V121V 0.23 TCGA-CG-4306-01 17 37826239 37826239 C T PNMT Missense_Mutation p.A149V 0.18 tolerated(0.26) benign(0.008) TCGA-CG-4306-01 17 38230678 38230678 G T THRA 5'UTR 0.34 TCGA-CG-4306-01 17 38487554 38487554 C - RARA Frame_Shift_Del p.P30Lfs*12 0.19 TCGA-CG-4306-01 17 38548531 38548531 T - TOP2A Frame_Shift_Del p.T1343Lfs*27 0.22 TCGA-CG-4306-01 17 39034577 39034577 C T KRT20 Missense_Mutation p.R320H 0.16 deleterious(0.04) benign(0.115) TCGA-CG-4306-01 17 40832446 40832446 C T CCR10 Missense_Mutation p.A72T 0.33 tolerated(0.59) benign(0.004) TCGA-CG-4306-01 17 40836173 40836173 G A CNTNAP1 Missense_Mutation p.V97I 0.23 tolerated(0.1) possibly_damaging(0.581) TCGA-CG-4306-01 17 41004674 41004674 C - AOC3 Frame_Shift_Del p.L440Cfs*46 0.22 TCGA-CG-4306-01 17 41019902 41019902 C T AOC4P RNA 0.19 TCGA-CG-4306-01 17 41244466 41244466 G A BRCA1 Missense_Mutation p.R1028C 0.19 tolerated(0.13) possibly_damaging(0.466) TCGA-CG-4306-01 17 41958160 41958160 C T MPP2 Missense_Mutation p.R350Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-CG-4306-01 17 42330716 42330716 C T SLC4A1 Missense_Mutation p.R694H 0.21 deleterious(0.01) probably_damaging(1) TCGA-CG-4306-01 17 42636530 42636530 C T FZD2 Missense_Mutation p.R492C 0.21 tolerated(0.11) possibly_damaging(0.849) TCGA-CG-4306-01 17 42745017 42745017 A - C17orf104 Frame_Shift_Del p.I582* 0.28 TCGA-CG-4306-01 17 42837126 42837126 G - ADAM11 Frame_Shift_Del p.G35Afs*52 0.31 TCGA-CG-4306-01 17 43037677 43037677 C T C1QL1 Missense_Mutation p.S219N 0.23 deleterious(0) probably_damaging(0.988) TCGA-CG-4306-01 17 43196290 43196290 C T PLCD3 Missense_Mutation p.V269M 0.22 tolerated(0.05) probably_damaging(0.95) TCGA-CG-4306-01 17 43474387 43474387 C T ARHGAP27 Missense_Mutation p.A275T 0.16 tolerated(0.45) benign(0.015) TCGA-CG-4306-01 17 45369918 45369918 G - ITGB3 Frame_Shift_Del p.E560Rfs*109 0.29 TCGA-CG-4306-01 17 45788075 45788076 - G TBKBP1 3'UTR 0.23 TCGA-CG-4306-01 17 46654330 46654330 C T HOXB4 Silent p.T170T 0.26 TCGA-CG-4306-01 17 47696653 47696653 G A SPOP Missense_Mutation p.R99W 0.22 tolerated(0.29) benign(0.331) TCGA-CG-4306-01 17 47700149 47700149 T C SPOP Silent p.P8P 0.22 TCGA-CG-4306-01 17 48627597 48627597 A G SPATA20 Missense_Mutation p.Q341R 0.19 tolerated(0.65) benign(0.006) TCGA-CG-4306-01 17 48917620 48917620 C T WFIKKN2 Missense_Mutation p.P324L 0.22 tolerated(0.14) benign(0.039) TCGA-CG-4306-01 17 49067155 49067155 G A SPAG9 Missense_Mutation p.A899V 0.26 tolerated(0.24) benign(0.011) TCGA-CG-4306-01 17 5462052 5462052 T - NLRP1 Frame_Shift_Del p.K655Rfs*3 0.23 TCGA-CG-4306-01 17 57288418 57288418 G A SMG8 Missense_Mutation p.V336M 0.18 deleterious(0) probably_damaging(1) TCGA-CG-4306-01 17 58121371 58121371 G A HEATR6 Silent p.Y1033Y 0.28 TCGA-CG-4306-01 17 62036661 62036661 G A SCN4A Silent p.N661N 0.25 TCGA-CG-4306-01 17 649966 649966 G T GEMIN4 Silent p.A439A 0.21 TCGA-CG-4306-01 17 6510238 6510238 A C KIAA0753 Missense_Mutation p.L655R 0.22 tolerated(0.08) probably_damaging(0.998) TCGA-CG-4306-01 17 65720282 65720282 C T NOL11 Missense_Mutation p.R213W 0.15 deleterious(0.01) possibly_damaging(0.806) TCGA-CG-4306-01 17 66982438 66982438 C T ABCA9 Missense_Mutation p.E1359K 0.17 tolerated(0.12) benign(0.009) TCGA-CG-4306-01 17 6940102 6940102 G A SLC16A13 Missense_Mutation p.G86R 0.21 deleterious(0) probably_damaging(0.998) TCGA-CG-4306-01 17 7095236 7095236 C T DLG4 Missense_Mutation p.R694H 0.26 deleterious(0) possibly_damaging(0.809) TCGA-CG-4306-01 17 71166486 71166486 G A SSTR2 Missense_Mutation p.S343N 0.32 tolerated(0.39) benign(0.006) TCGA-CG-4306-01 17 7131322 7131322 G T DVL2 Missense_Mutation p.P359H 0.14 deleterious(0) probably_damaging(0.999) TCGA-CG-4306-01 17 7132917 7132917 C T DVL2 Missense_Mutation p.R246H 0.17 tolerated(0.08) possibly_damaging(0.893) TCGA-CG-4306-01 17 7163530 7163530 C - CLDN7 3'UTR 0.35 TCGA-CG-4306-01 17 7287908 7287908 G T TNK1 Missense_Mutation p.W324C 0.21 deleterious(0) probably_damaging(1) TCGA-CG-4306-01 17 73096287 73096287 G A SLC16A5 Missense_Mutation p.G177R 0.23 deleterious(0) probably_damaging(0.997) TCGA-CG-4306-01 17 73230741 73230741 G A NUP85 Missense_Mutation p.R542H 0.20 deleterious(0.02) possibly_damaging(0.858) TCGA-CG-4306-01 17 73539557 73539557 A G LLGL2 Missense_Mutation p.K17R 0.24 tolerated(0.08) possibly_damaging(0.67) TCGA-CG-4306-01 17 73723340 73723340 G A ITGB4 Missense_Mutation p.A49T 0.29 deleterious(0.05) probably_damaging(1) TCGA-CG-4306-01 17 73733432 73733432 C T ITGB4 Missense_Mutation p.R674W 0.30 deleterious(0) probably_damaging(0.999) TCGA-CG-4306-01 17 74719969 74719969 G A JMJD6 Silent p.D230D 0.29 TCGA-CG-4306-01 17 75196739 75196739 G A SEC14L1 Nonsense_Mutation p.W331* 0.04 TCGA-CG-4306-01 17 7612856 7612856 C - EFNB3 Frame_Shift_Del p.Q331Rfs*39 0.30 TCGA-CG-4306-01 17 76503643 76503643 C T DNAH17 Missense_Mutation p.R1490Q 0.26 possibly_damaging(0.626) TCGA-CG-4306-01 17 7749498 7749498 T C KDM6B Silent p.L113L 0.25 TCGA-CG-4306-01 17 77770056 77770056 C G CBX8 Missense_Mutation p.E58Q 0.17 deleterious(0) probably_damaging(0.982) TCGA-CG-4306-01 17 78090814 78090814 G - GAA Frame_Shift_Del p.E748Rfs*16 0.23 TCGA-CG-4306-01 17 79173615 79173615 G A AZI1 Silent p.G309G 0.20 TCGA-CG-4306-01 17 7976509 7976509 G A ALOX12B Missense_Mutation p.T628M 0.27 tolerated(0.09) possibly_damaging(0.626) TCGA-CG-4306-01 17 7980427 7980427 G A ALOX12B Missense_Mutation p.R386C 0.24 deleterious(0.02) probably_damaging(0.998) TCGA-CG-4306-01 17 80863898 80863898 G A TBCD Missense_Mutation p.A631T 0.30 deleterious(0.01) possibly_damaging(0.631) TCGA-CG-4306-01 17 81052065 81052065 G A METRNL Silent p.L227L 0.23 TCGA-CG-4306-01 17 8409646 8409646 C T MYH10 Missense_Mutation p.A1126T 0.23 benign(0.231) TCGA-CG-4306-01 17 8701914 8701914 G A MFSD6L Silent p.S175S 0.20 TCGA-CG-4306-01 17 8706475 8706475 C T PIK3R6 3'UTR 0.26 TCGA-CG-4306-01 17 9760756 9760756 C T GLP2R Missense_Mutation p.R210C 0.22 deleterious(0) probably_damaging(1) TCGA-CG-4306-01 18 21056996 21056996 T C RIOK3 Silent p.C400C 0.18 TCGA-CG-4306-01 18 21112182 21112182 C T NPC1 Missense_Mutation p.R1274Q 0.21 tolerated(0.17) benign(0.006) TCGA-CG-4306-01 18 28612232 28612232 C T DSC3 Missense_Mutation p.R27H 0.23 deleterious(0.03) benign(0.008) TCGA-CG-4306-01 18 30275442 30275442 G A KLHL14 Silent p.D381D 0.18 TCGA-CG-4306-01 18 31323088 31323088 G T ASXL3 Missense_Mutation p.E1092D 0.20 benign(0.055) TCGA-CG-4306-01 18 33736541 33736541 T - ELP2 Frame_Shift_Del p.S530Lfs*18 0.23 TCGA-CG-4306-01 18 34205516 34205516 C - FHOD3 Frame_Shift_Del p.S336Vfs*138 0.28 TCGA-CG-4306-01 18 43262376 43262376 G A SLC14A2 Silent p.P885P 0.32 TCGA-CG-4306-01 18 43446800 43446800 G A EPG5 Missense_Mutation p.A2195V 0.21 deleterious(0) probably_damaging(0.972) TCGA-CG-4306-01 18 44561181 44561181 C A TCEB3B Missense_Mutation p.R152I 0.25 deleterious(0.02) possibly_damaging(0.454) TCGA-CG-4306-01 18 46860144 46860146 CTT - DYM In_Frame_Del p.E191del 0.37 TCGA-CG-4306-01 18 47390531 47390531 G A MYO5B Nonsense_Mutation p.R1275* 0.26 TCGA-CG-4306-01 18 47778135 47778135 G A CCDC11 Missense_Mutation p.R165C 0.27 deleterious(0) probably_damaging(1) TCGA-CG-4306-01 18 47803053 47803053 T - MBD1 Frame_Shift_Del p.T152Rfs*33 0.38 TCGA-CG-4306-01 18 56204716 56204716 T G ALPK2 Silent p.T901T 0.24 TCGA-CG-4306-01 18 56963955 56963955 G A CPLX4 Missense_Mutation p.A153V 0.32 tolerated(0.05) probably_damaging(0.994) TCGA-CG-4306-01 18 59221671 59221671 G A CDH20 Missense_Mutation p.A717T 0.25 tolerated(0.4) benign(0.001) TCGA-CG-4306-01 18 60646006 60646006 C T PHLPP1 Missense_Mutation p.P1499L 0.20 deleterious(0) benign(0.198) TCGA-CG-4306-01 18 67863751 67863751 A - RTTN Frame_Shift_Del p.F276Sfs*69 0.27 TCGA-CG-4306-01 18 67992095 67992096 - A SOCS6 Frame_Shift_Ins p.N66Kfs*49 0.26 TCGA-CG-4306-01 18 74091541 74091541 C - ZNF516 Frame_Shift_Del p.M844Cfs*131 0.21 TCGA-CG-4306-01 18 76752289 76752289 G A SALL3 Missense_Mutation p.A100T 0.24 tolerated(0.41) unknown(0) TCGA-CG-4306-01 18 77067118 77067118 A G ATP9B Missense_Mutation p.N553D 0.22 deleterious(0) probably_damaging(0.998) TCGA-CG-4306-01 18 77477825 77477825 G A CTDP1 Silent p.A742A 0.06 TCGA-CG-4306-01 18 8379271 8379271 G T PTPRM Missense_Mutation p.R1240L 0.16 deleterious(0) probably_damaging(1) TCGA-CG-4306-01 18 9593862 9593864 CCA - PPP4R1 In_Frame_Del p.V66del 0.23 TCGA-CG-4306-01 19 10076989 10076989 C T COL5A3 Splice_Site p.X1594_splice 0.08 TCGA-CG-4306-01 19 1048922 1048922 T A ABCA7 Missense_Mutation p.N766K 0.29 tolerated(0.22) possibly_damaging(0.629) TCGA-CG-4306-01 19 10793817 10793817 G T ILF3 Missense_Mutation p.G522V 0.47 deleterious(0) probably_damaging(0.991) TCGA-CG-4306-01 19 10798154 10798154 C A ILF3 Missense_Mutation p.A735D 0.44 tolerated(0.41) unknown(0) TCGA-CG-4306-01 19 1085684 1085684 G A HMHA1 Silent p.S1046S 0.50 TCGA-CG-4306-01 19 11470601 11470601 C - DKFZP761J1410 Frame_Shift_Del p.P97Qfs*29 0.33 TCGA-CG-4306-01 19 11943295 11943295 A C ZNF440 Missense_Mutation p.Y435S 0.14 tolerated(0.45) benign(0.007) TCGA-CG-4306-01 19 12384448 12384448 A - ZNF44 Frame_Shift_Del p.W256Gfs*34 0.35 TCGA-CG-4306-01 19 13264528 13264528 C T IER2 Silent p.R176R 0.54 TCGA-CG-4306-01 19 1455462 1455462 G A APC2 Missense_Mutation p.R201H 1.00 probably_damaging(0.994) TCGA-CG-4306-01 19 14629180 14629180 G A DNAJB1 5'UTR 0.55 TCGA-CG-4306-01 19 15278099 15278099 C T NOTCH3 Missense_Mutation p.A1775T 0.04 tolerated(0.44) benign(0.003) TCGA-CG-4306-01 19 15302604 15302604 C T NOTCH3 Missense_Mutation p.V252M 0.54 tolerated(0.13) probably_damaging(1) TCGA-CG-4306-01 19 16641463 16641463 T - CHERP Frame_Shift_Del p.N270Tfs*385 0.44 TCGA-CG-4306-01 19 17322569 17322569 G - MYO9B Frame_Shift_Del p.A2017Pfs*40 0.56 TCGA-CG-4306-01 19 17945961 17945961 C - JAK3 Frame_Shift_Del p.A660Lfs*10 0.20 TCGA-CG-4306-01 19 19790942 19790942 C A ZNF101 Silent p.R382R 0.50 TCGA-CG-4306-01 19 20044270 20044270 A - ZNF93 Frame_Shift_Del p.K171Nfs*6 0.38 TCGA-CG-4306-01 19 21909815 21909815 T C ZNF100 Silent p.E433E 0.09 TCGA-CG-4306-01 19 30193800 30193800 G - C19orf12 Frame_Shift_Del p.P93Lfs*26 0.19 TCGA-CG-4306-01 19 30505891 30505891 G A URI1 Missense_Mutation p.R508Q 0.26 deleterious_low_confidence(0.01) benign(0.221) TCGA-CG-4306-01 19 33968993 33968993 G A PEPD Silent p.F169F 0.20 TCGA-CG-4306-01 19 35550661 35550661 A G HPN Missense_Mutation p.N82S 0.17 tolerated(0.09) benign(0.089) TCGA-CG-4306-01 19 35801452 35801452 C T MAG Nonsense_Mutation p.R508* 0.19 TCGA-CG-4306-01 19 35842942 35842942 C T FFAR1 Missense_Mutation p.P163L 0.20 tolerated(0.45) benign(0.19) TCGA-CG-4306-01 19 36210893 36210893 C - KMT2B Frame_Shift_Del p.R217Gfs*22 0.20 TCGA-CG-4306-01 19 36211899 36211899 C - KMT2B Frame_Shift_Del p.K553Nfs*52 0.28 TCGA-CG-4306-01 19 36229028 36229028 A C KMT2B Missense_Mutation p.E2603A 0.25 probably_damaging(0.958) TCGA-CG-4306-01 19 36279193 36279193 C T ARHGAP33 Silent p.Y1081Y 0.20 TCGA-CG-4306-01 19 36399123 36399123 C - TYROBP Frame_Shift_Del p.G3Dfs*17 0.31 TCGA-CG-4306-01 19 36430659 36430659 C T LRFN3 Missense_Mutation p.A111V 0.31 deleterious(0) probably_damaging(0.95) TCGA-CG-4306-01 19 38027882 38027882 T A ZNF793 Missense_Mutation p.L108M 0.24 deleterious(0.05) possibly_damaging(0.621) TCGA-CG-4306-01 19 38159989 38159989 A - ZNF781 3'UTR 0.21 TCGA-CG-4306-01 19 38780920 38780920 C T SPINT2 Missense_Mutation p.R185C 0.24 deleterious(0) possibly_damaging(0.676) TCGA-CG-4306-01 19 38980003 38980003 G T RYR1 Nonsense_Mutation p.E1912* 0.21 TCGA-CG-4306-01 19 39019617 39019617 G A RYR1 Silent p.E3687E 0.10 TCGA-CG-4306-01 19 39329144 39329144 G T HNRNPL Silent p.R484R 0.18 TCGA-CG-4306-01 19 39914611 39914611 T C PLEKHG2 Silent p.H946H 0.27 TCGA-CG-4306-01 19 39961140 39961140 C T SUPT5H Nonsense_Mutation p.R552* 0.23 TCGA-CG-4306-01 19 39995921 39995921 G A DLL3 Missense_Mutation p.R308Q 0.22 tolerated(0.12) probably_damaging(0.999) TCGA-CG-4306-01 19 40710471 40710471 G A MAP3K10 Missense_Mutation p.V315M 0.10 deleterious(0) probably_damaging(0.964) TCGA-CG-4306-01 19 40741022 40741022 G A AKT2 Silent p.S432S 0.21 TCGA-CG-4306-01 19 40887032 40887032 T C HIPK4 Missense_Mutation p.D289G 0.06 deleterious(0) probably_damaging(0.992) TCGA-CG-4306-01 19 40901531 40901531 C T PRX Missense_Mutation p.A910T 0.22 tolerated(1) benign(0) TCGA-CG-4306-01 19 41094670 41094670 G A SHKBP1 Missense_Mutation p.A493T 0.28 deleterious(0.05) benign(0.137) TCGA-CG-4306-01 19 41782099 41782099 C T HNRNPUL1 Missense_Mutation p.R228W 0.19 deleterious(0) unknown(0) TCGA-CG-4306-01 19 41931674 41931674 G A B3GNT8 Missense_Mutation p.T337I 0.19 tolerated(0.18) benign(0.031) TCGA-CG-4306-01 19 422256 422256 C T SHC2 Missense_Mutation p.D504N 0.53 tolerated(0.21) probably_damaging(0.99) TCGA-CG-4306-01 19 42383610 42383610 C - CD79A Frame_Shift_Del p.R131Gfs*61 0.23 TCGA-CG-4306-01 19 42486241 42486241 G A ATP1A3 Silent p.T350T 0.24 TCGA-CG-4306-01 19 42713983 42713983 G - DEDD2 Frame_Shift_Del p.P153Qfs*42 0.28 TCGA-CG-4306-01 19 43023168 43023168 G A CEACAM1 Missense_Mutation p.T393M 0.26 tolerated(0.07) benign(0.347) TCGA-CG-4306-01 19 43233450 43233450 C T PSG3 Silent p.A356A 0.23 TCGA-CG-4306-01 19 44223611 44223611 T C IRGC Missense_Mutation p.Y301H 0.04 deleterious(0) possibly_damaging(0.531) TCGA-CG-4306-01 19 44777229 44777229 C - ZNF233 Frame_Shift_Del p.C141Vfs*18 0.21 TCGA-CG-4306-01 19 45412466 45412466 G A APOE Missense_Mutation p.V305M 0.21 tolerated(0.07) benign(0.047) TCGA-CG-4306-01 19 45556099 45556099 G A CLASRP Missense_Mutation p.R83H 0.23 deleterious(0) probably_damaging(1) TCGA-CG-4306-01 19 45867584 45867584 C T ERCC2 Missense_Mutation p.V242I 0.24 tolerated(0.06) possibly_damaging(0.577) TCGA-CG-4306-01 19 45971826 45971826 C - FOSB 5'UTR 0.38 TCGA-CG-4306-01 19 46215641 46215641 C T FBXO46 Silent p.T371T 0.29 TCGA-CG-4306-01 19 46215859 46215859 G T FBXO46 Silent p.R299R 0.41 TCGA-CG-4306-01 19 46314009 46314009 G A RSPH6A Missense_Mutation p.T247M 0.23 tolerated(0.07) benign(0.096) TCGA-CG-4306-01 19 46915101 46915101 C G CCDC8 Missense_Mutation p.A323P 0.21 probably_damaging(0.93) TCGA-CG-4306-01 19 46973245 46973245 C T PNMAL1 Missense_Mutation p.V350M 0.24 tolerated(1) benign(0.001) TCGA-CG-4306-01 19 46998617 46998617 C T PNMAL2 Missense_Mutation p.E36K 0.29 deleterious(0.03) possibly_damaging(0.747) TCGA-CG-4306-01 19 47151728 47151728 A G DACT3 3'UTR 0.02 TCGA-CG-4306-01 19 47725009 47725009 G A BBC3 Silent p.L245L 0.23 TCGA-CG-4306-01 19 48201924 48201924 C T GLTSCR1 Silent p.S1094S 0.21 TCGA-CG-4306-01 19 49340665 49340665 G A PLEKHA4 Missense_Mutation p.R741C 0.34 deleterious_low_confidence(0) possibly_damaging(0.847) TCGA-CG-4306-01 19 49404120 49404120 G A NUCB1 Missense_Mutation p.A23T 0.29 tolerated(0.22) benign(0.001) TCGA-CG-4306-01 19 50412220 50412220 G C NUP62 Missense_Mutation p.T282S 0.25 tolerated(0.14) benign(0.003) TCGA-CG-4306-01 19 51220109 51220109 C - SHANK1 Frame_Shift_Del p.G23Afs*50 0.24 TCGA-CG-4306-01 19 52115550 52115550 C T SIGLEC5 Silent p.S530S 0.24 TCGA-CG-4306-01 19 52888041 52888041 C T ZNF880 Missense_Mutation p.T403M 0.29 deleterious(0) possibly_damaging(0.632) TCGA-CG-4306-01 19 54783692 54783692 G A LILRB2 Silent p.R103R 0.22 TCGA-CG-4306-01 19 55177749 55177749 C T LILRB4 Silent p.D311D 0.10 TCGA-CG-4306-01 19 55286823 55286823 G A KIR2DL1 Missense_Mutation p.G193R 0.23 deleterious(0.04) probably_damaging(0.984) TCGA-CG-4306-01 19 56090051 56090051 C T ZNF579 Missense_Mutation p.V319I 0.16 tolerated(0.55) possibly_damaging(0.623) TCGA-CG-4306-01 19 56104559 56104559 G A FIZ1 Missense_Mutation p.H250Y 0.38 deleterious(0) unknown(0) TCGA-CG-4306-01 19 56538862 56538862 C A NLRP5 Silent p.V421V 0.18 TCGA-CG-4306-01 19 57133352 57133352 G A ZNF71 Missense_Mutation p.E233K 0.22 deleterious(0.03) probably_damaging(0.992) TCGA-CG-4306-01 19 57134184 57134184 G A ZNF71 3'UTR 0.32 TCGA-CG-4306-01 19 5745968 5745968 G T CATSPERD Silent p.G234G 0.05 TCGA-CG-4306-01 19 57642249 57642249 C A USP29 Missense_Mutation p.Q736K 0.29 tolerated(0.29) benign(0.245) TCGA-CG-4306-01 19 58153212 58153212 A G ZNF211 Missense_Mutation p.Y518C 0.22 deleterious(0) probably_damaging(0.999) TCGA-CG-4306-01 19 58189782 58189782 G T ZSCAN4 Nonsense_Mutation p.G271* 0.23 TCGA-CG-4306-01 19 58483842 58483842 A G C19orf18 Missense_Mutation p.L86P 0.11 tolerated(0.17) benign(0.028) TCGA-CG-4306-01 19 59011987 59011987 G A SLC27A5 Silent p.F423F 0.25 TCGA-CG-4306-01 19 59022708 59022708 G T SLC27A5 Missense_Mutation p.N205K 0.21 deleterious(0) probably_damaging(0.999) TCGA-CG-4306-01 19 5933443 5933443 C T RANBP3 Missense_Mutation p.G152S 0.48 deleterious(0.03) possibly_damaging(0.677) TCGA-CG-4306-01 19 6466890 6466890 C - CRB3 Intron 0.27 TCGA-CG-4306-01 19 7676026 7676026 C - CAMSAP3 Frame_Shift_Del p.Q394Sfs*11 0.29 TCGA-CG-4306-01 19 7810788 7810788 C T CD209 Missense_Mutation p.E122K 0.44 tolerated(0.12) probably_damaging(0.983) TCGA-CG-4306-01 19 9019283 9019283 C T MUC16 Missense_Mutation p.S12535N 0.20 possibly_damaging(0.491) TCGA-CG-4306-01 19 9056926 9056926 T C MUC16 Missense_Mutation p.M10174V 0.45 benign(0.003) TCGA-CG-4306-01 19 9061718 9061718 G A MUC16 Silent p.F8576F 0.26 TCGA-CG-4306-01 1 100353617 100353617 G A AGL Missense_Mutation p.C922Y 0.20 deleterious(0) possibly_damaging(0.492) TCGA-CG-4306-01 1 100480939 100480939 G A SLC35A3 Missense_Mutation p.G239E 0.21 deleterious(0) probably_damaging(0.987) TCGA-CG-4306-01 1 101705604 101705604 C T S1PR1 Missense_Mutation p.S355L 0.31 tolerated(0.11) possibly_damaging(0.548) TCGA-CG-4306-01 1 102270106 102270106 G A OLFM3 Silent p.N355N 0.25 TCGA-CG-4306-01 1 108681756 108681756 G A SLC25A24 Silent p.C391C 0.28 TCGA-CG-4306-01 1 109643016 109643016 C - TMEM167B 3'Flank 0.10 TCGA-CG-4306-01 1 109814897 109814897 T C CELSR2 Intron 0.19 TCGA-CG-4306-01 1 109857386 109857386 A C SORT1 Missense_Mutation p.N755K 0.26 tolerated(0.26) benign(0.002) TCGA-CG-4306-01 1 110466431 110466431 C - CSF1 Frame_Shift_Del p.P398Rfs*79 0.29 TCGA-CG-4306-01 1 110889132 110889132 A - RBM15 3'UTR 0.21 TCGA-CG-4306-01 1 113245673 113245673 C T RHOC Silent p.P75P 0.26 TCGA-CG-4306-01 1 113471890 113471890 G - SLC16A1 Frame_Shift_Del p.P14Qfs*10 0.28 TCGA-CG-4306-01 1 115217434 115217434 G A AMPD1 Missense_Mutation p.T613I 0.29 tolerated(0.19) benign(0.261) TCGA-CG-4306-01 1 119575735 119575735 G A WARS2 Silent p.S294S 0.32 TCGA-CG-4306-01 1 120437094 120437095 - T ADAM30 Frame_Shift_Ins p.N622Kfs*5 0.21 TCGA-CG-4306-01 1 1290438 1290438 G A MXRA8 Silent p.H191H 0.32 TCGA-CG-4306-01 1 142713769 142713769 T C RP11-417J8.6 RNA 0.27 TCGA-CG-4306-01 1 145561338 145561338 G A ANKRD35 Silent p.Q342Q 0.35 TCGA-CG-4306-01 1 146757977 146757977 T C CHD1L Missense_Mutation p.M674T 0.30 tolerated(0.18) benign(0.007) TCGA-CG-4306-01 1 147380609 147380609 G A GJA8 Missense_Mutation p.R176Q 0.21 tolerated(0.46) benign(0.015) TCGA-CG-4306-01 1 149398889 149398889 C T HIST2H3PS2 3'Flank 0.14 TCGA-CG-4306-01 1 149915984 149915984 G - OTUD7B Frame_Shift_Del p.Y769Tfs*59 0.38 TCGA-CG-4306-01 1 150192906 150192906 A G ANP32E 3'UTR 0.03 TCGA-CG-4306-01 1 151108547 151108547 G A SEMA6C Missense_Mutation p.P400L 0.23 deleterious(0) probably_damaging(0.995) TCGA-CG-4306-01 1 151140036 151140036 G A SCNM1 Intron 0.35 TCGA-CG-4306-01 1 151261166 151261166 C T ZNF687 Missense_Mutation p.R760C 0.25 deleterious(0) possibly_damaging(0.849) TCGA-CG-4306-01 1 151263250 151263250 G A ZNF687 Silent p.T1093T 0.27 TCGA-CG-4306-01 1 151491196 151491196 G A CGN Silent p.V67V 0.25 TCGA-CG-4306-01 1 151508742 151508742 G A CGN Missense_Mutation p.R1076Q 0.23 deleterious(0) probably_damaging(0.998) TCGA-CG-4306-01 1 151785741 151785741 C T RORC Missense_Mutation p.G383D 0.21 deleterious(0) probably_damaging(0.975) TCGA-CG-4306-01 1 152058006 152058006 T G TCHHL1 Missense_Mutation p.N718H 0.25 deleterious(0.01) benign(0.087) TCGA-CG-4306-01 1 152286125 152286125 C T FLG Missense_Mutation p.G413R 0.24 probably_damaging(0.954) TCGA-CG-4306-01 1 152484143 152484143 C A LCE5A Missense_Mutation p.P45T 0.14 tolerated_low_confidence(1) unknown(0) TCGA-CG-4306-01 1 152732678 152732678 C - KPRP Frame_Shift_Del p.Q207Sfs*4 0.29 TCGA-CG-4306-01 1 153390650 153390650 G T S100A7A Missense_Mutation p.S31I 0.22 deleterious(0.01) possibly_damaging(0.552) TCGA-CG-4306-01 1 153587727 153587727 A G S100A14 Missense_Mutation p.L54P 0.12 deleterious(0) probably_damaging(0.99) TCGA-CG-4306-01 1 153955391 153955391 C T RAB13 Intron 0.24 TCGA-CG-4306-01 1 154680583 154680583 G T KCNN3 Missense_Mutation p.L689M 0.20 deleterious(0.01) possibly_damaging(0.829) TCGA-CG-4306-01 1 155034995 155034995 G A ADAM15 3'UTR 0.30 TCGA-CG-4306-01 1 155167338 155167338 G A THBS3 Silent p.Y805Y 0.26 TCGA-CG-4306-01 1 155237889 155237889 T C CLK2 Missense_Mutation p.I194V 0.10 tolerated(0.3) probably_damaging(0.986) TCGA-CG-4306-01 1 155264997 155264997 C T PKLR Missense_Mutation p.V202M 0.27 tolerated(0.06) benign(0.413) TCGA-CG-4306-01 1 155449273 155449273 G A ASH1L Missense_Mutation p.P1130S 0.21 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-CG-4306-01 1 155451950 155451950 C T ASH1L Silent p.P237P 0.28 TCGA-CG-4306-01 1 1559205 1559205 G - MIB2 Frame_Shift_Del p.M217Cfs*42 0.19 TCGA-CG-4306-01 1 156214585 156214585 C T PAQR6 Missense_Mutation p.E137K 0.16 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-CG-4306-01 1 158908274 158908274 C T PYHIN1 Missense_Mutation p.A118V 0.24 tolerated(0.16) benign(0.01) TCGA-CG-4306-01 1 158911818 158911818 C T PYHIN1 Nonsense_Mutation p.R211* 0.25 TCGA-CG-4306-01 1 160251955 160251955 G T PEX19 Silent p.A156A 0.31 TCGA-CG-4306-01 1 161695962 161695962 G A FCRLB Intron 0.19 TCGA-CG-4306-01 1 161953686 161953686 C T OLFML2B Missense_Mutation p.V678I 0.23 tolerated(0.41) probably_damaging(0.999) TCGA-CG-4306-01 1 16268632 16268632 C T ZBTB17 Silent p.Q748Q 0.29 TCGA-CG-4306-01 1 168169261 168169262 - A TIPRL Frame_Shift_Ins p.S268Kfs*18 0.19 TCGA-CG-4306-01 1 16935230 16935230 C T NBPF1 5'UTR 0.06 TCGA-CG-4306-01 1 17281945 17281945 C T CROCC Nonsense_Mutation p.R1202* 0.32 TCGA-CG-4306-01 1 173951935 173951935 C T RC3H1 Missense_Mutation p.R233Q 0.28 tolerated(0.06) probably_damaging(0.973) TCGA-CG-4306-01 1 174780992 174780992 A G RABGAP1L Missense_Mutation p.Q745R 0.13 tolerated(0.07) benign(0.445) TCGA-CG-4306-01 1 17603075 17603075 C - PADI3 Frame_Shift_Del p.V459Wfs*17 0.27 TCGA-CG-4306-01 1 176918359 176918359 C T ASTN1 Silent p.P672P 0.16 TCGA-CG-4306-01 1 17747226 17747226 A G RCC2 Silent p.P281P 0.22 TCGA-CG-4306-01 1 180886022 180886022 C T KIAA1614 Silent p.S261S 0.23 TCGA-CG-4306-01 1 183203527 183203528 - G LAMC2 Frame_Shift_Ins p.P751Afs*5 0.31 TCGA-CG-4306-01 1 183908027 183908027 C A COLGALT2 Silent p.V583V 0.24 TCGA-CG-4306-01 1 185106864 185106864 A T TRMT1L Missense_Mutation p.L463M 0.22 deleterious(0.02) probably_damaging(0.948) TCGA-CG-4306-01 1 185703894 185703895 - G HMCN1 5'UTR 0.28 TCGA-CG-4306-01 1 193107230 193107230 C T CDC73 Missense_Mutation p.R147C 0.24 deleterious(0.01) possibly_damaging(0.696) TCGA-CG-4306-01 1 196648770 196648770 C T CFH Missense_Mutation p.P213S 0.12 deleterious(0.01) possibly_damaging(0.818) TCGA-CG-4306-01 1 197026313 197026313 A G F13B Missense_Mutation p.V334A 0.23 tolerated(0.82) benign(0.071) TCGA-CG-4306-01 1 198222298 198222298 A - NEK7 Frame_Shift_Del p.V65Cfs*6 0.25 TCGA-CG-4306-01 1 200522567 200522567 G A KIF14 Silent p.S1632S 0.24 TCGA-CG-4306-01 1 200635555 200635556 - C DDX59 Frame_Shift_Ins p.E105Gfs*16 0.20 TCGA-CG-4306-01 1 202163322 202163322 G A LGR6 Missense_Mutation p.A69T 0.26 tolerated(0.27) benign(0.338) TCGA-CG-4306-01 1 202318225 202318225 T G PPP1R12B Silent p.A82A 0.21 TCGA-CG-4306-01 1 202698141 202698141 G - KDM5B 3'UTR 0.25 TCGA-CG-4306-01 1 203465253 203465253 C A OPTC Silent p.S40S 0.19 TCGA-CG-4306-01 1 204228411 204228411 C - PLEKHA6 Frame_Shift_Del p.V328Yfs*172 0.17 TCGA-CG-4306-01 1 205238752 205238752 C T TMCC2 Silent p.G474G 0.06 TCGA-CG-4306-01 1 205312590 205312590 C T KLHDC8A Missense_Mutation p.C48Y 0.23 deleterious(0.01) benign(0.21) TCGA-CG-4306-01 1 206328752 206328752 C T CTSE Silent p.S273S 0.24 TCGA-CG-4306-01 1 207881608 207881608 C T CR1L Nonsense_Mutation p.Q472* 0.25 TCGA-CG-4306-01 1 211433429 211433429 T - RCOR3 Intron 0.21 TCGA-CG-4306-01 1 211751694 211751694 G A SLC30A1 Silent p.I87I 0.11 TCGA-CG-4306-01 1 214814768 214814768 T C CENPF Silent p.C1029C 0.19 TCGA-CG-4306-01 1 22155955 22155955 C - HSPG2 Frame_Shift_Del p.K3972Rfs*58 0.23 TCGA-CG-4306-01 1 22174254 22174254 G A HSPG2 Silent p.C2651C 0.17 TCGA-CG-4306-01 1 223156446 223156446 A C DISP1 Silent p.P178P 0.21 TCGA-CG-4306-01 1 223176379 223176379 G A DISP1 Missense_Mutation p.R547H 0.18 tolerated(0.1) possibly_damaging(0.487) TCGA-CG-4306-01 1 227075861 227075861 T C PSEN2 Splice_Site p.X189_splice 0.31 TCGA-CG-4306-01 1 22843935 22843935 C T ZBTB40 Silent p.S937S 0.11 TCGA-CG-4306-01 1 228476440 228476440 G A OBSCN Missense_Mutation p.R3826H 0.29 benign(0.005) TCGA-CG-4306-01 1 228496852 228496852 C T OBSCN Silent p.G5221G 0.50 TCGA-CG-4306-01 1 228556591 228556592 - T OBSCN Frame_Shift_Ins p.W7604Lfs*22 0.36 TCGA-CG-4306-01 1 232941415 232941415 G A MAP10 Missense_Mutation p.G216S 0.30 tolerated(0.07) probably_damaging(1) TCGA-CG-4306-01 1 233372595 233372595 G - PCNXL2 Frame_Shift_Del p.P785Hfs*4 0.29 TCGA-CG-4306-01 1 233394457 233394457 G - PCNXL2 Frame_Shift_Del p.P384Qfs*4 0.25 TCGA-CG-4306-01 1 2334626 2334626 T - RER1 3'UTR 0.28 TCGA-CG-4306-01 1 233497844 233497844 C T MLK4 Nonsense_Mutation p.Q453* 0.29 TCGA-CG-4306-01 1 233514890 233514890 C - MLK4 Frame_Shift_Del p.Q715Rfs*236 0.34 TCGA-CG-4306-01 1 237872219 237872219 G A RYR2 Silent p.P3321P 0.17 TCGA-CG-4306-01 1 237947592 237947592 G A RYR2 Missense_Mutation p.E4194K 0.22 probably_damaging(0.998) TCGA-CG-4306-01 1 240370335 240370335 G A FMN2 Silent p.A741A 0.25 TCGA-CG-4306-01 1 24669458 24669458 G A GRHL3 Silent p.T454T 0.28 TCGA-CG-4306-01 1 246797236 246797236 A G CNST Silent p.A209A 0.24 TCGA-CG-4306-01 1 247464565 247464565 C T ZNF496 Silent p.P340P 0.20 TCGA-CG-4306-01 1 248005039 248005039 G A OR11L1 Nonsense_Mutation p.R54* 0.20 TCGA-CG-4306-01 1 248084550 248084551 - A OR2T8 Frame_Shift_Ins p.M79Nfs*4 0.18 TCGA-CG-4306-01 1 248112877 248112877 T C OR2L8 Missense_Mutation p.C240R 0.06 deleterious(0) probably_damaging(0.929) TCGA-CG-4306-01 1 248616240 248616240 C G OR2T2 Missense_Mutation p.L48V 0.11 tolerated(0.08) benign(0.206) TCGA-CG-4306-01 1 27101438 27101438 C - ARID1A Frame_Shift_Del p.P1575Hfs*37 0.31 TCGA-CG-4306-01 1 27949552 27949552 C T FGR Splice_Site p.X110_splice 0.20 TCGA-CG-4306-01 1 31208095 31208095 G T LAPTM5 Nonsense_Mutation p.C208* 0.20 TCGA-CG-4306-01 1 32145288 32145288 T C COL16A1 Splice_Site p.X907_splice 0.23 TCGA-CG-4306-01 1 34043061 34043061 C T CSMD2 Missense_Mutation p.A2473T 0.17 tolerated(0.69) benign(0.002) TCGA-CG-4306-01 1 34663184 34663184 C T C1orf94 Missense_Mutation p.R227C 0.18 deleterious(0.04) benign(0.001) TCGA-CG-4306-01 1 36024729 36024729 G A NCDN Missense_Mutation p.A19T 0.04 deleterious_low_confidence(0) possibly_damaging(0.811) TCGA-CG-4306-01 1 36307280 36307280 C T AGO4 Missense_Mutation p.P702S 0.24 deleterious(0) probably_damaging(1) TCGA-CG-4306-01 1 36358210 36358210 C T AGO1 Missense_Mutation p.R88C 0.20 tolerated(0.11) possibly_damaging(0.656) TCGA-CG-4306-01 1 36432609 36432609 G A AGO3 Missense_Mutation p.R82H 0.24 tolerated(0.06) benign(0.405) TCGA-CG-4306-01 1 40433301 40433301 T G MFSD2A Missense_Mutation p.L351R 0.20 deleterious(0) possibly_damaging(0.908) TCGA-CG-4306-01 1 40702138 40702139 - A RLF Frame_Shift_Ins p.F591Ifs*2 0.22 TCGA-CG-4306-01 1 40766913 40766913 C T COL9A2 Missense_Mutation p.G671R 0.14 deleterious(0.02) probably_damaging(0.969) TCGA-CG-4306-01 1 42046106 42046108 CCT - HIVEP3 In_Frame_Del p.E1454del 0.15 TCGA-CG-4306-01 1 43649306 43649306 A - WDR65 Frame_Shift_Del p.N174Mfs*14 0.23 TCGA-CG-4306-01 1 43903494 43903494 C T SZT2 Silent p.S2086S 0.23 TCGA-CG-4306-01 1 44447558 44447558 C T B4GALT2 Missense_Mutation p.R200W 0.17 deleterious(0) probably_damaging(1) TCGA-CG-4306-01 1 45120723 45120723 G A TMEM53 Silent p.N114N 0.27 TCGA-CG-4306-01 1 45793721 45793721 G T HPDL Missense_Mutation p.G301W 0.27 deleterious(0) probably_damaging(1) TCGA-CG-4306-01 1 53074041 53074041 C A GPX7 Missense_Mutation p.P170T 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-CG-4306-01 1 55075579 55075579 C T FAM151A Missense_Mutation p.E374K 0.26 tolerated(0.16) benign(0.007) TCGA-CG-4306-01 1 55457540 55457540 G A TMEM61 Missense_Mutation p.E133K 0.26 deleterious(0.01) probably_damaging(0.956) TCGA-CG-4306-01 1 6038351 6038351 C T NPHP4 Silent p.P86P 0.17 TCGA-CG-4306-01 1 6184676 6184676 C T CHD5 Silent p.A1480A 0.19 TCGA-CG-4306-01 1 65335080 65335080 G A JAK1 Silent p.N187N 0.25 TCGA-CG-4306-01 1 6586028 6586028 C T NOL9 Silent p.T665T 0.30 TCGA-CG-4306-01 1 67208905 67208905 A G SGIP1 3'UTR 0.33 TCGA-CG-4306-01 1 67861543 67861543 C T IL12RB2 Missense_Mutation p.T787M 0.23 deleterious(0.04) benign(0.302) TCGA-CG-4306-01 1 67895978 67895978 A G SERBP1 Silent p.P2P 0.23 TCGA-CG-4306-01 1 70504915 70504915 G T LRRC7 Silent p.V1098V 0.27 TCGA-CG-4306-01 1 74671584 74671584 C T FPGT 3'UTR 0.26 TCGA-CG-4306-01 1 7725039 7725039 G A CAMTA1 Missense_Mutation p.R811Q 0.29 tolerated_low_confidence(0.1) possibly_damaging(0.801) TCGA-CG-4306-01 1 78395171 78395171 T C NEXN Silent p.A345A 0.27 TCGA-CG-4306-01 1 78428529 78428529 T C FUBP1 Missense_Mutation p.M424V 0.20 tolerated(1) benign(0.007) TCGA-CG-4306-01 1 78601461 78601461 C T GIPC2 3'UTR 0.24 TCGA-CG-4306-01 1 84335594 84335594 A - TTLL7 3'UTR 0.23 TCGA-CG-4306-01 1 84650786 84650786 A G PRKACB Missense_Mutation p.N161D 0.28 tolerated(0.13) benign(0.251) TCGA-CG-4306-01 1 85020568 85020568 T - CTBS 3'UTR 0.32 TCGA-CG-4306-01 1 86173931 86173931 C A ZNHIT6 Nonsense_Mutation p.G13* 0.20 TCGA-CG-4306-01 1 87108245 87108246 - A RP4-651E10.4 Intron 0.15 TCGA-CG-4306-01 1 89599010 89599011 - T GBP7 Frame_Shift_Ins p.K532Efs*31 0.19 TCGA-CG-4306-01 1 89847424 89847424 C T GBP6 Missense_Mutation p.T348M 0.26 deleterious(0.01) possibly_damaging(0.906) TCGA-CG-4306-01 1 91382413 91382413 T - ZNF644 Frame_Shift_Del p.K1309Sfs*13 0.26 TCGA-CG-4306-01 1 989920 989920 C T AGRN Missense_Mutation p.A1990V 0.19 tolerated(0.11) possibly_damaging(0.702) TCGA-CG-4306-01 20 1294021 1294021 C T SDCBP2 Missense_Mutation p.R116H 0.23 tolerated(0.15) benign(0.036) TCGA-CG-4306-01 20 17610604 17610604 C T RRBP1 Silent p.A438A 0.29 TCGA-CG-4306-01 20 18511337 18511337 A T SEC23B Missense_Mutation p.M375L 0.18 tolerated(1) benign(0.013) TCGA-CG-4306-01 20 21687581 21687581 C T PAX1 Silent p.G264G 0.21 TCGA-CG-4306-01 20 30381814 30381814 T C TPX2 Missense_Mutation p.L558P 0.26 deleterious(0) probably_damaging(0.956) TCGA-CG-4306-01 20 33147545 33147545 G A MAP1LC3A Missense_Mutation p.R74H 0.27 deleterious(0) benign(0.025) TCGA-CG-4306-01 20 33862135 33862135 T C MMP24 Missense_Mutation p.V554A 0.28 tolerated(0.15) benign(0.357) TCGA-CG-4306-01 20 34022366 34022366 C T GDF5 Missense_Mutation p.V283M 0.17 deleterious(0.02) probably_damaging(0.963) TCGA-CG-4306-01 20 34618312 34618312 G T CNBD2 Missense_Mutation p.Q487H 0.05 deleterious(0.04) benign(0.029) TCGA-CG-4306-01 20 35507503 35507503 G A TLDC2 Silent p.T83T 0.25 TCGA-CG-4306-01 20 36627613 36627613 G - TTI1 Frame_Shift_Del p.L924Wfs*37 0.22 TCGA-CG-4306-01 20 41101154 41101154 C T PTPRT Missense_Mutation p.R401Q 0.28 tolerated(0.06) benign(0.375) TCGA-CG-4306-01 20 42088725 42088725 G A SRSF6 Missense_Mutation p.R145Q 0.16 deleterious(0.01) probably_damaging(0.983) TCGA-CG-4306-01 20 43058237 43058237 G A HNF4A Missense_Mutation p.V453I 0.26 tolerated_low_confidence(1) benign(0.001) TCGA-CG-4306-01 20 45315634 45315634 G - TP53RK Frame_Shift_Del p.L174Wfs*4 0.26 TCGA-CG-4306-01 20 45867695 45867695 C T ZMYND8 Silent p.P824P 0.21 TCGA-CG-4306-01 20 47270000 47270000 G A PREX1 Nonsense_Mutation p.Q749* 0.23 TCGA-CG-4306-01 20 47739654 47739654 G A STAU1 Missense_Mutation p.P314L 0.23 deleterious(0.04) probably_damaging(1) TCGA-CG-4306-01 20 47858504 47858505 AA - DDX27 Frame_Shift_Del p.K691Gfs*12 0.27 TCGA-CG-4306-01 20 47989557 47989557 C - KCNB1 Frame_Shift_Del p.G847Efs*24 0.20 TCGA-CG-4306-01 20 47989891 47989891 G - KCNB1 Frame_Shift_Del p.R736Gfs*9 0.29 TCGA-CG-4306-01 20 47990503 47990503 T C KCNB1 Missense_Mutation p.M532V 0.24 deleterious_low_confidence(0.01) benign(0.111) TCGA-CG-4306-01 20 50244187 50244187 G A ATP9A Silent p.L599L 0.25 TCGA-CG-4306-01 20 53226972 53226972 C T DOK5 Silent p.D215D 0.22 TCGA-CG-4306-01 20 55012542 55012542 C T CASS4 Missense_Mutation p.A120V 0.19 tolerated(1) benign(0) TCGA-CG-4306-01 20 56094287 56094287 G A CTCFL Missense_Mutation p.R301W 0.25 deleterious(0) probably_damaging(1) TCGA-CG-4306-01 20 58490593 58490593 T - SYCP2 Frame_Shift_Del p.M176* 0.22 TCGA-CG-4306-01 20 5904506 5904507 - A CHGB Frame_Shift_Ins p.P575Afs*4 0.28 TCGA-CG-4306-01 20 60575303 60575303 T - TAF4 Frame_Shift_Del p.K888Nfs*4 0.25 TCGA-CG-4306-01 20 60701385 60701385 C T LSM14B Missense_Mutation p.S106L 0.17 tolerated(0.21) benign(0.116) TCGA-CG-4306-01 20 60908501 60908501 C T LAMA5 Missense_Mutation p.A1020T 0.26 probably_damaging(0.996) TCGA-CG-4306-01 20 61431073 61431073 C - MRGBP 3'UTR 0.22 TCGA-CG-4306-01 20 61827842 61827842 A - YTHDF1 3'UTR 0.33 TCGA-CG-4306-01 20 62321132 62321132 G A RTEL1 Silent p.Q709Q 0.28 TCGA-CG-4306-01 20 62520579 62520579 T C TPD52L2 Silent p.V194V 0.21 TCGA-CG-4306-01 20 62737475 62737475 C T NPBWR2 Missense_Mutation p.R237H 0.19 tolerated(0.54) possibly_damaging(0.845) TCGA-CG-4306-01 20 62836917 62836917 G A MYT1 Missense_Mutation p.C54Y 0.24 benign(0.008) TCGA-CG-4306-01 20 7980484 7980484 C T TMX4 Missense_Mutation p.R121H 0.25 deleterious(0) possibly_damaging(0.548) TCGA-CG-4306-01 20 8608995 8608995 C T PLCB1 Missense_Mutation p.R101C 0.14 deleterious(0) benign(0.087) TCGA-CG-4306-01 20 947858 947858 G A RSPO4 Missense_Mutation p.P123L 0.25 deleterious(0) probably_damaging(1) TCGA-CG-4306-01 21 27945300 27945300 G A CYYR1 5'UTR 0.22 TCGA-CG-4306-01 21 30698948 30698948 C T BACH1 Missense_Mutation p.P268L 0.19 tolerated(0.82) benign(0) TCGA-CG-4306-01 21 31743969 31743970 - A KRTAP13-2 3'UTR 0.13 TCGA-CG-4306-01 21 33246192 33246192 G T HUNK Missense_Mutation p.G69C 0.15 deleterious(0) probably_damaging(0.984) TCGA-CG-4306-01 21 34947888 34947889 - T DONSON 3'Flank 0.28 TCGA-CG-4306-01 21 41270416 41270416 G A PCP4 Missense_Mutation p.A9T 0.31 tolerated_low_confidence(0.2) benign(0) TCGA-CG-4306-01 21 41516548 41516548 G A DSCAM Silent p.S1043S 0.23 TCGA-CG-4306-01 21 42718974 42718974 T C FAM3B Silent p.S144S 0.21 TCGA-CG-4306-01 21 44182210 44182210 G A PDE9A Missense_Mutation p.R368H 0.24 tolerated(0.06) benign(0.324) TCGA-CG-4306-01 21 44438317 44438317 A T PKNOX1 Missense_Mutation p.T233S 0.23 tolerated(0.41) benign(0.192) TCGA-CG-4306-01 21 47614502 47614502 C - LSS Frame_Shift_Del p.E631Rfs*26 0.12 TCGA-CG-4306-01 22 18301213 18301213 C T MICAL3 Missense_Mutation p.R1405Q 0.22 benign(0) TCGA-CG-4306-01 22 18846126 18846126 G A BCRP7 RNA 0.15 TCGA-CG-4306-01 22 19119120 19119120 G A TSSK2 Missense_Mutation p.G70S 0.28 tolerated(0.23) benign(0.001) TCGA-CG-4306-01 22 19396104 19396104 C A HIRA Missense_Mutation p.G38V 0.24 deleterious(0) probably_damaging(0.998) TCGA-CG-4306-01 22 19463058 19463058 C T UFD1L Missense_Mutation p.R24H 0.22 deleterious(0) benign(0.267) TCGA-CG-4306-01 22 19882970 19882971 - T TXNRD2 Frame_Shift_Ins p.E304Gfs*7 0.18 TCGA-CG-4306-01 22 20103586 20103586 C T TRMT2A Missense_Mutation p.E192K 0.24 tolerated(0.32) benign(0.072) TCGA-CG-4306-01 22 20114614 20114615 - T RANBP1 3'UTR 0.22 TCGA-CG-4306-01 22 21330537 21330537 G A AIFM3 Missense_Mutation p.V281M 0.24 tolerated(0.23) benign(0.066) TCGA-CG-4306-01 22 21377631 21377631 C A P2RX6 Missense_Mutation p.P236T 0.25 deleterious(0) probably_damaging(0.999) TCGA-CG-4306-01 22 22153338 22153338 C T MAPK1 Missense_Mutation p.R191H 0.21 deleterious(0.01) probably_damaging(1) TCGA-CG-4306-01 22 24891319 24891319 G A UPB1 5'UTR 0.18 TCGA-CG-4306-01 22 26423348 26423348 C T MYO18B Missense_Mutation p.R2470C 0.26 deleterious(0.02) possibly_damaging(0.624) TCGA-CG-4306-01 22 29449693 29449693 T - ZNRF3 3'UTR 0.18 TCGA-CG-4306-01 22 30856091 30856091 C T SEC14L3 Missense_Mutation p.A374T 0.05 tolerated(0.31) benign(0) TCGA-CG-4306-01 22 30887696 30887696 G A SEC14L4 Silent p.G315G 0.22 TCGA-CG-4306-01 22 31301891 31301891 G A OSBP2 Missense_Mutation p.V815I 0.21 tolerated(0.13) benign(0.418) TCGA-CG-4306-01 22 31485922 31485922 C - SMTN Frame_Shift_Del p.S239Afs*118 0.19 TCGA-CG-4306-01 22 31496923 31496923 C T SMTN Nonsense_Mutation p.R886* 0.32 TCGA-CG-4306-01 22 35817310 35817310 G T MCM5 Splice_Site p.X611_splice 0.28 TCGA-CG-4306-01 22 37769104 37769104 G - ELFN2 3'UTR 0.22 TCGA-CG-4306-01 22 37769658 37769658 G A ELFN2 Silent p.S639S 0.25 TCGA-CG-4306-01 22 38528987 38528987 C T PLA2G6 Missense_Mutation p.V310M 0.22 deleterious(0) probably_damaging(0.99) TCGA-CG-4306-01 22 40676019 40676019 T - TNRC6B Frame_Shift_Del p.F1095Lfs*8 0.23 TCGA-CG-4306-01 22 41195058 41195058 A - SLC25A17 Frame_Shift_Del p.L30Wfs*42 0.30 TCGA-CG-4306-01 22 41226918 41226918 G A ST13 Missense_Mutation p.R242C 0.25 tolerated(0.1) benign(0.006) TCGA-CG-4306-01 22 41832246 41832246 T - TOB2 3'UTR 0.23 TCGA-CG-4306-01 22 43735243 43735243 T C SCUBE1 Splice_Site p.X30_splice 0.20 TCGA-CG-4306-01 22 43898596 43898596 G A MPPED1 Missense_Mutation p.R274H 0.17 deleterious(0) probably_damaging(0.992) TCGA-CG-4306-01 22 44031067 44031067 G A EFCAB6 Silent p.D671D 0.32 TCGA-CG-4306-01 22 46792559 46792559 G A CELSR1 Missense_Mutation p.P1929L 0.33 tolerated(0.05) benign(0.107) TCGA-CG-4306-01 22 49103656 49103656 G A FAM19A5 Silent p.T130T 0.32 TCGA-CG-4306-01 22 50191612 50191612 C T BRD1 Missense_Mutation p.V647M 0.20 tolerated(0.12) benign(0.279) TCGA-CG-4306-01 22 50316958 50316958 G A CRELD2 Silent p.T304T 0.31 TCGA-CG-4306-01 22 50658984 50658984 G T TUBGCP6 Silent p.T1268T 0.18 TCGA-CG-4306-01 2 100916228 100916228 G A LONRF2 Silent p.D406D 0.13 TCGA-CG-4306-01 2 101885796 101885796 G A CNOT11 Missense_Mutation p.R485Q 0.27 deleterious(0) probably_damaging(0.988) TCGA-CG-4306-01 2 119600627 119600627 C T EN1 Missense_Mutation p.A356T 0.27 deleterious(0.04) probably_damaging(1) TCGA-CG-4306-01 2 1263213 1263213 G A SNTG2 Silent p.K359K 0.16 TCGA-CG-4306-01 2 128476878 128476878 C T WDR33 Silent p.T907T 0.13 TCGA-CG-4306-01 2 128476952 128476952 G A WDR33 Missense_Mutation p.P883S 0.21 tolerated_low_confidence(0.17) probably_damaging(0.968) TCGA-CG-4306-01 2 128622637 128622637 G - AMMECR1L 3'UTR 0.51 TCGA-CG-4306-01 2 131521965 131521965 C T AMER3 Missense_Mutation p.P774S 0.29 tolerated(0.21) benign(0.001) TCGA-CG-4306-01 2 133483297 133483297 G A NCKAP5 Silent p.S1872S 0.26 TCGA-CG-4306-01 2 135215680 135215680 C T TMEM163 Silent p.K244K 0.22 TCGA-CG-4306-01 2 136409442 136409442 C - R3HDM1 Frame_Shift_Del p.P589Lfs*83 0.34 TCGA-CG-4306-01 2 141201956 141201956 T C LRP1B Missense_Mutation p.N3413D 0.22 possibly_damaging(0.621) TCGA-CG-4306-01 2 141660492 141660492 C T LRP1B Missense_Mutation p.V1255I 0.17 benign(0) TCGA-CG-4306-01 2 148683686 148683686 A - ACVR2A Frame_Shift_Del p.K437Rfs*5 0.42 TCGA-CG-4306-01 2 152739824 152739824 G A CACNB4 Missense_Mutation p.R70W 0.17 deleterious(0) probably_damaging(0.933) TCGA-CG-4306-01 2 15613424 15613424 G A NBAS Silent p.Y549Y 0.32 TCGA-CG-4306-01 2 160025864 160025864 T C TANC1 Silent p.G350G 0.32 TCGA-CG-4306-01 2 162280585 162280585 C T TBR1 Silent p.Y632Y 0.39 TCGA-CG-4306-01 2 163695056 163695056 C - KCNH7 5'UTR 0.26 TCGA-CG-4306-01 2 165600195 165600195 A G COBLL1 Splice_Site p.X77_splice 0.29 TCGA-CG-4306-01 2 166852549 166852550 - T SCN1A Frame_Shift_Ins p.P1519Tfs*18 0.26 TCGA-CG-4306-01 2 170042445 170042445 C A LRP2 Missense_Mutation p.R3138L 0.28 benign(0.011) TCGA-CG-4306-01 2 170112668 170112670 TCT - LRP2 In_Frame_Del p.R906del 0.30 TCGA-CG-4306-01 2 170938287 170938287 A G UBR3 Silent p.Q1867Q 0.27 TCGA-CG-4306-01 2 171822463 171822463 C T GORASP2 Silent p.P394P 0.24 TCGA-CG-4306-01 2 174229538 174229538 C T CDCA7 Nonsense_Mutation p.R239* 0.07 TCGA-CG-4306-01 2 17698737 17698737 T - RAD51AP2 Frame_Shift_Del p.T316Lfs*2 0.27 TCGA-CG-4306-01 2 176987559 176987559 C T HOXD9 Silent p.Y21Y 0.25 TCGA-CG-4306-01 2 178740634 178740634 T C PDE11A Missense_Mutation p.K440R 0.05 tolerated(0.48) probably_damaging(0.987) TCGA-CG-4306-01 2 179443547 179443547 G A TTN Missense_Mutation p.A22737V 0.25 TCGA-CG-4306-01 2 179474816 179474816 C T TTN Splice_Site p.X17146_splice 0.26 TCGA-CG-4306-01 2 179576715 179576715 T C TTN Missense_Mutation p.N9281S 0.19 TCGA-CG-4306-01 2 179580340 179580340 C T TTN Missense_Mutation p.V8601I 0.42 TCGA-CG-4306-01 2 179597826 179597826 A - TTN Frame_Shift_Del p.F5359Lfs*28 0.12 TCGA-CG-4306-01 2 182323028 182323028 C T ITGA4 Silent p.C101C 0.16 TCGA-CG-4306-01 2 197002360 197002360 G T STK17B Silent p.S310S 0.05 TCGA-CG-4306-01 2 197183855 197183855 C T HECW2 Missense_Mutation p.A587T 0.17 tolerated_low_confidence(0.76) benign(0) TCGA-CG-4306-01 2 201437347 201437347 G T SGOL2 Missense_Mutation p.D760Y 0.18 deleterious(0.01) probably_damaging(0.99) TCGA-CG-4306-01 2 202149917 202149917 C T CASP8 Missense_Mutation p.P453L 0.23 deleterious(0) probably_damaging(1) TCGA-CG-4306-01 2 20845204 20845204 C A HS1BP3 Missense_Mutation p.G32C 0.26 deleterious(0) probably_damaging(1) TCGA-CG-4306-01 2 212248737 212248737 T - ERBB4 Frame_Shift_Del p.N1177Mfs*27 0.23 TCGA-CG-4306-01 2 21228330 21228330 C T APOB Missense_Mutation p.E3804K 0.23 benign(0.354) TCGA-CG-4306-01 2 21228376 21228376 C T APOB Silent p.E3788E 0.26 TCGA-CG-4306-01 2 21265342 21265342 G A APOB Missense_Mutation p.A43V 0.29 benign(0.06) TCGA-CG-4306-01 2 214878701 214878701 G A SPAG16 Missense_Mutation p.G476E 0.23 deleterious(0) probably_damaging(0.995) TCGA-CG-4306-01 2 215645974 215645975 - T BARD1 Frame_Shift_Ins p.K209Efs*5 0.18 TCGA-CG-4306-01 2 215839522 215839522 C T ABCA12 Missense_Mutation p.M1816I 0.24 tolerated(0.34) benign(0.001) TCGA-CG-4306-01 2 216809613 216809613 C T MREG Silent p.L206L 0.21 TCGA-CG-4306-01 2 217559282 217559282 G A IGFBP5 Missense_Mutation p.R73C 0.30 deleterious(0.03) possibly_damaging(0.892) TCGA-CG-4306-01 2 218683469 218683470 - C TNS1 Frame_Shift_Ins p.S1092Efs*9 0.12 TCGA-CG-4306-01 2 218925366 218925366 A - CXCR2P1 RNA 0.24 TCGA-CG-4306-01 2 219508052 219508052 G - ZNF142 Frame_Shift_Del p.Q1063Rfs*9 0.26 TCGA-CG-4306-01 2 219532655 219532655 T C RNF25 Missense_Mutation p.M113V 0.22 tolerated(1) probably_damaging(0.995) TCGA-CG-4306-01 2 219825311 219825311 G A CDK5R2 Missense_Mutation p.E257K 0.25 deleterious(0) possibly_damaging(0.802) TCGA-CG-4306-01 2 220081103 220081103 C - ABCB6 Frame_Shift_Del p.G318Vfs*9 0.27 TCGA-CG-4306-01 2 220164503 220164503 A G PTPRN Missense_Mutation p.L481P 0.24 deleterious(0) probably_damaging(0.998) TCGA-CG-4306-01 2 220404955 220404955 C T CHPF Missense_Mutation p.R493H 0.18 deleterious(0.01) benign(0.34) TCGA-CG-4306-01 2 220494985 220494985 T G SLC4A3 Missense_Mutation p.L268R 0.18 deleterious(0.01) benign(0.179) TCGA-CG-4306-01 2 220501408 220501408 C T SLC4A3 Nonsense_Mutation p.R810* 0.18 TCGA-CG-4306-01 2 222308249 222308249 C T EPHA4 Missense_Mutation p.A618T 0.04 tolerated(0.26) possibly_damaging(0.817) TCGA-CG-4306-01 2 225729690 225729690 C - DOCK10 Frame_Shift_Del p.A458Lfs*31 0.27 TCGA-CG-4306-01 2 226447379 226447379 C - NYAP2 Frame_Shift_Del p.P417Rfs*30 0.44 TCGA-CG-4306-01 2 230652221 230652221 T - TRIP12 Frame_Shift_Del p.K1590Nfs*4 0.12 TCGA-CG-4306-01 2 230725188 230725188 T A TRIP12 Intron 0.23 TCGA-CG-4306-01 2 232262945 232262945 G A B3GNT7 Missense_Mutation p.R172H 0.26 deleterious(0.02) benign(0.103) TCGA-CG-4306-01 2 234854587 234854587 G A TRPM8 Missense_Mutation p.V263M 0.26 deleterious(0) possibly_damaging(0.731) TCGA-CG-4306-01 2 238242176 238242176 G - COL6A3 Frame_Shift_Del p.P3082Hfs*16 0.30 TCGA-CG-4306-01 2 24042696 24042697 - A ATAD2B Frame_Shift_Ins p.E730* 0.11 TCGA-CG-4306-01 2 241517269 241517269 G A RNPEPL1 Missense_Mutation p.S482N 0.38 tolerated_low_confidence(0.94) benign(0) TCGA-CG-4306-01 2 241569626 241569626 C T GPR35 Missense_Mutation p.T117M 0.22 deleterious(0.03) probably_damaging(0.909) TCGA-CG-4306-01 2 25013338 25013338 C T PTRHD1 Missense_Mutation p.R122Q 0.26 tolerated(0.05) possibly_damaging(0.876) TCGA-CG-4306-01 2 25464521 25464521 C A DNMT3A Missense_Mutation p.E664D 0.21 deleterious(0) probably_damaging(0.997) TCGA-CG-4306-01 2 27305168 27305168 G A EMILIN1 Silent p.Q243Q 0.23 TCGA-CG-4306-01 2 27456970 27456970 C T CAD Missense_Mutation p.A1165V 0.08 deleterious(0) probably_damaging(1) TCGA-CG-4306-01 2 27587741 27587741 G A EIF2B4 Missense_Mutation p.H426Y 0.31 deleterious(0.05) possibly_damaging(0.899) TCGA-CG-4306-01 2 27603204 27603204 C T ZNF513 Intron 0.25 TCGA-CG-4306-01 2 29022154 29022154 G A PPP1CB Silent p.P323P 0.05 TCGA-CG-4306-01 2 31572970 31572970 C - XDH Frame_Shift_Del p.Q919Rfs*10 0.22 TCGA-CG-4306-01 2 32476488 32476488 C T NLRC4 Missense_Mutation p.V149M 0.23 tolerated(0.08) benign(0.037) TCGA-CG-4306-01 2 32824935 32824935 C T BIRC6 Nonsense_Mutation p.R4654* 0.23 TCGA-CG-4306-01 2 33500077 33500077 G A LTBP1 Missense_Mutation p.R930H 0.24 tolerated(0.41) benign(0.344) TCGA-CG-4306-01 2 37414569 37414569 C A SULT6B1 Missense_Mutation p.A43S 0.16 tolerated(0.22) benign(0.392) TCGA-CG-4306-01 2 38224583 38224584 AA - RMDN2 Frame_Shift_Del p.K503Nfs*23 0.27 TCGA-CG-4306-01 2 47639588 47639588 A - MSH2 Frame_Shift_Del p.A230Lfs*16 0.19 TCGA-CG-4306-01 2 55489517 55489517 T - MTIF2 Frame_Shift_Del p.K89Rfs*3 0.24 TCGA-CG-4306-01 2 55561924 55561925 - T CCDC88A Frame_Shift_Ins p.T678Nfs*4 0.28 TCGA-CG-4306-01 2 56420368 56420368 G - CCDC85A Frame_Shift_Del p.S347Afs*2 0.33 TCGA-CG-4306-01 2 61319641 61319641 C T KIAA1841 Silent p.F377F 0.21 TCGA-CG-4306-01 2 61433932 61433932 C T USP34 Silent p.S3003S 0.31 TCGA-CG-4306-01 2 63282962 63282962 G A OTX1 Silent p.S192S 0.39 TCGA-CG-4306-01 2 69271944 69271944 A G ANTXR1 Missense_Mutation p.R99G 0.22 deleterious(0) probably_damaging(0.979) TCGA-CG-4306-01 2 70905912 70905912 G A ADD2 Missense_Mutation p.T436M 0.26 deleterious(0) probably_damaging(0.958) TCGA-CG-4306-01 2 71191573 71191573 C - ATP6V1B1 Frame_Shift_Del p.I386Sfs*10 0.27 TCGA-CG-4306-01 2 71351664 71351665 - A MCEE Frame_Shift_Ins p.S17Ffs*50 0.27 TCGA-CG-4306-01 2 71753393 71753393 G A DYSF Missense_Mutation p.S398N 0.22 tolerated(0.16) benign(0.011) TCGA-CG-4306-01 2 73452826 73452826 T C SMYD5 Missense_Mutation p.L368P 0.27 deleterious(0) probably_damaging(0.999) TCGA-CG-4306-01 2 73826620 73826620 A G ALMS1 Silent p.V3879V 0.25 TCGA-CG-4306-01 2 74043233 74043233 T C C2orf78 Missense_Mutation p.M628T 0.20 deleterious(0.04) benign(0.005) TCGA-CG-4306-01 2 74143792 74143792 C G ACTG2 Missense_Mutation p.A296G 0.22 tolerated_low_confidence(0.55) benign(0) TCGA-CG-4306-01 2 74362716 74362716 G A BOLA3 3'UTR 0.23 TCGA-CG-4306-01 2 74755569 74755569 T C AUP1 Missense_Mutation p.Q191R 0.22 tolerated(0.72) benign(0.001) TCGA-CG-4306-01 2 80646660 80646660 C A CTNNA2 Missense_Mutation p.S408R 0.23 tolerated(0.46) benign(0.009) TCGA-CG-4306-01 2 85892493 85892493 G A SFTPB Silent p.S209S 0.28 TCGA-CG-4306-01 2 86352130 86352130 C T PTCD3 Silent p.N243N 0.24 TCGA-CG-4306-01 2 86677036 86677036 A G KDM3A Missense_Mutation p.E98G 0.21 tolerated(0.09) probably_damaging(0.997) TCGA-CG-4306-01 2 90060915 90060915 A G IGKV6D-21 Missense_Mutation p.T88A 0.32 deleterious(0) possibly_damaging(0.624) TCGA-CG-4306-01 2 97751910 97751910 G A FAHD2B Missense_Mutation p.A163V 0.13 tolerated(0.19) probably_damaging(0.951) TCGA-CG-4306-01 2 98804519 98804519 G A VWA3B Missense_Mutation p.V465I 0.28 tolerated(0.08) possibly_damaging(0.84) TCGA-CG-4306-01 3 10206671 10206671 G T IRAK2 Missense_Mutation p.W11C 0.22 tolerated(0.07) benign(0.059) TCGA-CG-4306-01 3 11372885 11372885 C T ATG7 Silent p.V250V 0.07 TCGA-CG-4306-01 3 114058003 114058003 G - ZBTB20 Frame_Shift_Del p.P692Lfs*43 0.29 TCGA-CG-4306-01 3 119134094 119134094 C A ARHGAP31 Silent p.S1106S 0.24 TCGA-CG-4306-01 3 119451295 119451295 A - MAATS1 Frame_Shift_Del p.N393Tfs*10 0.20 TCGA-CG-4306-01 3 120500198 120500198 C T GTF2E1 Missense_Mutation p.R401C 0.16 tolerated(0.06) benign(0.002) TCGA-CG-4306-01 3 121415620 121415620 G A GOLGB1 Silent p.D1250D 0.28 TCGA-CG-4306-01 3 121416977 121416977 A G GOLGB1 Missense_Mutation p.L798P 0.25 probably_damaging(0.999) TCGA-CG-4306-01 3 122632777 122632777 C T SEMA5B Missense_Mutation p.R741H 0.22 deleterious(0) probably_damaging(1) TCGA-CG-4306-01 3 123987730 123987730 C T KALRN Silent p.A197A 0.23 TCGA-CG-4306-01 3 124810944 124810944 C - SLC12A8 Splice_Site p.X601_splice 0.32 TCGA-CG-4306-01 3 125877315 125877315 G - ALDH1L1 Frame_Shift_Del p.R109Gfs*62 0.32 TCGA-CG-4306-01 3 127783636 127783637 - T SEC61A1 Intron 0.33 TCGA-CG-4306-01 3 130682921 130682921 C T ATP2C1 Missense_Mutation p.P370S 0.20 deleterious(0.01) possibly_damaging(0.891) TCGA-CG-4306-01 3 132323997 132323997 T C ACAD11 Silent p.K489K 0.10 TCGA-CG-4306-01 3 132403629 132403629 G A NPHP3 Silent p.D1113D 0.20 TCGA-CG-4306-01 3 133476768 133476768 C T TF Silent p.I342I 0.27 TCGA-CG-4306-01 3 13525002 13525002 C T HDAC11 Missense_Mutation p.R64W 0.22 deleterious(0.02) possibly_damaging(0.67) TCGA-CG-4306-01 3 136048788 136048788 C T PCCB Nonsense_Mutation p.R534* 0.21 TCGA-CG-4306-01 3 13679178 13679178 G A FBLN2 Missense_Mutation p.R1152H 0.26 deleterious(0.01) probably_damaging(1) TCGA-CG-4306-01 3 138665438 138665438 C T FOXL2 Missense_Mutation p.G43R 0.34 tolerated_low_confidence(0.42) unknown(0) TCGA-CG-4306-01 3 139077618 139077618 C A COPB2 Missense_Mutation p.D841Y 0.17 deleterious(0.01) benign(0.072) TCGA-CG-4306-01 3 139093415 139093415 G A COPB2 Nonsense_Mutation p.Q223* 0.04 TCGA-CG-4306-01 3 142051258 142051258 T C XRN1 Missense_Mutation p.E1393G 0.26 tolerated_low_confidence(0.16) benign(0.044) TCGA-CG-4306-01 3 142137373 142137373 G A XRN1 Missense_Mutation p.T440M 0.31 deleterious(0) benign(0.17) TCGA-CG-4306-01 3 142272237 142272237 G A ATR Silent p.A879A 0.22 TCGA-CG-4306-01 3 1424848 1424848 T C CNTN6 Missense_Mutation p.S797P 0.24 deleterious(0) possibly_damaging(0.809) TCGA-CG-4306-01 3 142840671 142840671 C T CHST2 Missense_Mutation p.A338V 0.19 tolerated(0.8) probably_damaging(0.995) TCGA-CG-4306-01 3 15455535 15455535 A - METTL6 Frame_Shift_Del p.F222Lfs*19 0.18 TCGA-CG-4306-01 3 16252680 16252681 - A GALNT15 Frame_Shift_Ins p.N378Kfs*6 0.23 TCGA-CG-4306-01 3 16358500 16358500 G A RFTN1 Silent p.G524G 0.31 TCGA-CG-4306-01 3 164781250 164781250 A - SI Frame_Shift_Del p.L296* 0.18 TCGA-CG-4306-01 3 167319987 167319987 G A WDR49 Silent p.G60G 0.23 TCGA-CG-4306-01 3 167507159 167507159 A - SERPINI1 Frame_Shift_Del p.N83Mfs*8 0.21 TCGA-CG-4306-01 3 169890411 169890411 C T PHC3 Silent p.L90L 0.27 TCGA-CG-4306-01 3 178984477 178984477 C T KCNMB3 Missense_Mutation p.V8M 0.15 deleterious(0) possibly_damaging(0.748) TCGA-CG-4306-01 3 179448448 179448448 C A USP13 Missense_Mutation p.P402H 0.17 deleterious(0) probably_damaging(0.998) TCGA-CG-4306-01 3 179754369 179754369 G A PEX5L Nonsense_Mutation p.Q7* 0.21 TCGA-CG-4306-01 3 183535841 183535841 C T MAP6D1 Missense_Mutation p.A154T 0.26 tolerated(0.55) benign(0.074) TCGA-CG-4306-01 3 190999910 190999911 - A UTS2B Frame_Shift_Ins p.L23Ffs*15 0.22 TCGA-CG-4306-01 3 192997234 192997235 - A ATP13A5 Frame_Shift_Ins p.S1079Ffs*18 0.18 TCGA-CG-4306-01 3 194180670 194180670 T - ATP13A3 Frame_Shift_Del p.I86Ffs*29 0.24 TCGA-CG-4306-01 3 195488395 195488396 - G MUC4 Frame_Shift_Ins p.G4859Rfs*4 0.20 TCGA-CG-4306-01 3 195925221 195925221 G - ZDHHC19 Frame_Shift_Del p.P292Qfs*61 0.32 TCGA-CG-4306-01 3 24185082 24185082 G A THRB Silent p.D216D 0.29 TCGA-CG-4306-01 3 27326330 27326330 C T NEK10 Splice_Site p.X637_splice 0.22 TCGA-CG-4306-01 3 27758906 27758906 C A EOMES Missense_Mutation p.M572I 0.24 tolerated(0.43) benign(0.391) TCGA-CG-4306-01 3 3067806 3067806 C - CNTN4 Frame_Shift_Del p.P504Lfs*18 0.21 TCGA-CG-4306-01 3 3081856 3081856 G A CNTN4 Missense_Mutation p.V767M 0.24 deleterious(0.02) benign(0.374) TCGA-CG-4306-01 3 3143376 3143376 C A IL5RA Missense_Mutation p.G123W 0.18 deleterious(0) probably_damaging(1) TCGA-CG-4306-01 3 32859669 32859669 T C TRIM71 Missense_Mutation p.S33P 0.21 deleterious_low_confidence(0.01) unknown(0) TCGA-CG-4306-01 3 32932420 32932421 - A TRIM71 Frame_Shift_Ins p.K577Qfs*23 0.24 TCGA-CG-4306-01 3 33165922 33165922 G A CRTAP Missense_Mutation p.R215Q 0.27 tolerated(0.11) benign(0.04) TCGA-CG-4306-01 3 36779824 36779824 G - DCLK3 Frame_Shift_Del p.R110Gfs*69 0.19 TCGA-CG-4306-01 3 38524744 38524744 G A ACVR2B Missense_Mutation p.G487D 0.22 tolerated(0.63) benign(0.035) TCGA-CG-4306-01 3 38592438 38592438 T C SCN5A Missense_Mutation p.I1809V 0.23 deleterious(0.04) probably_damaging(0.975) TCGA-CG-4306-01 3 38739967 38739967 G A SCN10A Missense_Mutation p.R1582C 0.27 deleterious(0) probably_damaging(0.998) TCGA-CG-4306-01 3 39228640 39228640 C T XIRP1 Missense_Mutation p.S766N 0.12 deleterious(0.01) benign(0.039) TCGA-CG-4306-01 3 42605070 42605070 G T SEC22C Silent p.S97S 0.22 TCGA-CG-4306-01 3 44488178 44488178 G T ZNF445 Missense_Mutation p.S995R 0.21 tolerated(0.07) benign(0.005) TCGA-CG-4306-01 3 44700211 44700211 T C ZNF35 Missense_Mutation p.L119P 0.22 tolerated(0.24) benign(0) TCGA-CG-4306-01 3 45077254 45077254 C T CLEC3B Silent p.G149G 0.17 TCGA-CG-4306-01 3 46487972 46487972 C A LTF Missense_Mutation p.S439I 0.22 tolerated(0.17) benign(0.023) TCGA-CG-4306-01 3 46560368 46560368 T - LRRC2 3'UTR 0.33 TCGA-CG-4306-01 3 47859553 47859553 C - DHX30 Frame_Shift_Del p.R25Afs*23 0.24 TCGA-CG-4306-01 3 48611124 48611124 G A COL7A1 Missense_Mutation p.P2191L 0.50 probably_damaging(0.913) TCGA-CG-4306-01 3 48621801 48621801 G - COL7A1 Frame_Shift_Del p.P1376Lfs*23 0.24 TCGA-CG-4306-01 3 48692475 48692475 A G CELSR3 Splice_Site p.X1663_splice 0.29 TCGA-CG-4306-01 3 48699498 48699498 G A CELSR3 Silent p.N190N 0.21 TCGA-CG-4306-01 3 49161199 49161199 G T LAMB2 Silent p.A1253A 0.18 TCGA-CG-4306-01 3 49315713 49315713 C T USP4 3'UTR 0.23 TCGA-CG-4306-01 3 49742418 49742418 G A RNF123 Missense_Mutation p.R654H 0.14 tolerated(0.06) possibly_damaging(0.542) TCGA-CG-4306-01 3 49940481 49940481 C T MST1R Missense_Mutation p.V188M 0.27 tolerated(0.15) probably_damaging(0.989) TCGA-CG-4306-01 3 51417604 51417604 C - DOCK3 Frame_Shift_Del p.P1852Qfs*45 0.40 TCGA-CG-4306-01 3 51455629 51455629 A G VPRBP Silent p.S724S 0.13 TCGA-CG-4306-01 3 51457448 51457448 T - VPRBP Frame_Shift_Del p.K563Nfs*16 0.29 TCGA-CG-4306-01 3 52423487 52423487 G A DNAH1 Missense_Mutation p.R3169H 0.11 probably_damaging(0.996) TCGA-CG-4306-01 3 52825870 52825871 - G ITIH1 Frame_Shift_Ins p.A895Gfs*10 0.16 TCGA-CG-4306-01 3 57283464 57283464 C T APPL1 Missense_Mutation p.R314C 0.22 deleterious(0) probably_damaging(0.973) TCGA-CG-4306-01 3 57613788 57613788 T G DENND6A 3'UTR 0.17 TCGA-CG-4306-01 3 62153736 62153736 G A PTPRG Missense_Mutation p.R311H 0.23 tolerated(0.15) benign(0.003) TCGA-CG-4306-01 3 64133071 64133071 C T PRICKLE2 Silent p.L365L 0.25 TCGA-CG-4306-01 3 65416494 65416494 G A MAGI1 Missense_Mutation p.R476W 0.27 deleterious(0) probably_damaging(0.947) TCGA-CG-4306-01 3 67058751 67058751 G A KBTBD8 Missense_Mutation p.R583Q 0.24 deleterious(0.05) probably_damaging(0.957) TCGA-CG-4306-01 3 77607139 77607139 A G ROBO2 Missense_Mutation p.N442D 0.24 deleterious(0.02) possibly_damaging(0.621) TCGA-CG-4306-01 3 79067638 79067638 T C ROBO1 Intron 0.20 TCGA-CG-4306-01 3 8809756 8809756 G A OXTR Missense_Mutation p.R40C 0.32 deleterious(0) probably_damaging(0.947) TCGA-CG-4306-01 3 93755588 93755588 C T ARL13B Nonsense_Mutation p.R227* 0.35 TCGA-CG-4306-01 3 97311563 97311563 C - EPHA6 Frame_Shift_Del p.R834Gfs*8 0.31 TCGA-CG-4306-01 3 98217288 98217288 T - OR5K2 Frame_Shift_Del p.F257Sfs*24 0.25 TCGA-CG-4306-01 4 106155661 106155661 A - TET2 Frame_Shift_Del p.S189Vfs*18 0.21 TCGA-CG-4306-01 4 110223187 110223187 C T COL25A1 5'UTR 0.27 TCGA-CG-4306-01 4 129776926 129776926 G A JADE1 Missense_Mutation p.V280I 0.27 deleterious(0) probably_damaging(0.981) TCGA-CG-4306-01 4 13605718 13605718 C T BOD1L1 Missense_Mutation p.A936T 0.25 benign(0.004) TCGA-CG-4306-01 4 138442446 138442446 A G PCDH18 Missense_Mutation p.Y1049H 0.25 tolerated(0.38) benign(0.022) TCGA-CG-4306-01 4 149357534 149357534 G A NR3C2 Missense_Mutation p.P160L 0.21 deleterious_low_confidence(0) possibly_damaging(0.908) TCGA-CG-4306-01 4 153896924 153896924 C - FHDC1 Frame_Shift_Del p.P829Lfs*32 0.38 TCGA-CG-4306-01 4 155250793 155250793 G A DCHS2 Missense_Mutation p.T812I 0.27 deleterious(0) possibly_damaging(0.703) TCGA-CG-4306-01 4 159092457 159092457 C T FAM198B Missense_Mutation p.R24H 0.24 tolerated(0.13) benign(0.042) TCGA-CG-4306-01 4 159756572 159756572 T A FNIP2 Missense_Mutation p.V224D 0.22 deleterious(0) probably_damaging(0.984) TCGA-CG-4306-01 4 160253755 160253755 A - RAPGEF2 Frame_Shift_Del p.S522Vfs*12 0.29 TCGA-CG-4306-01 4 170613460 170613460 A - CLCN3 Frame_Shift_Del p.R311Gfs*14 0.23 TCGA-CG-4306-01 4 170913207 170913207 C A MFAP3L Missense_Mutation p.K184N 0.26 deleterious(0) probably_damaging(0.999) TCGA-CG-4306-01 4 172735778 172735778 C T GALNTL6 Missense_Mutation p.T16M 0.19 tolerated(0.26) benign(0) TCGA-CG-4306-01 4 177146478 177146478 G A ASB5 Nonsense_Mutation p.R71* 0.20 TCGA-CG-4306-01 4 178352896 178352896 T - AGA Frame_Shift_Del p.N336Ifs*29 0.25 TCGA-CG-4306-01 4 184605943 184605943 A G TRAPPC11 Missense_Mutation p.M506V 0.22 tolerated(1) benign(0.072) TCGA-CG-4306-01 4 185941867 185941867 G A HELT Missense_Mutation p.G309S 0.27 tolerated_low_confidence(0.07) benign(0.133) TCGA-CG-4306-01 4 187527365 187527365 A T FAT1 Silent p.I3403I 0.16 TCGA-CG-4306-01 4 24542564 24542564 G A DHX15 Missense_Mutation p.T498I 0.27 deleterious(0) probably_damaging(0.926) TCGA-CG-4306-01 4 25335563 25335563 T C ZCCHC4 Silent p.G213G 0.20 TCGA-CG-4306-01 4 2932779 2932779 C T MFSD10 Intron 0.28 TCGA-CG-4306-01 4 3208281 3208281 A G HTT Missense_Mutation p.D1926G 0.27 probably_damaging(0.928) TCGA-CG-4306-01 4 38800054 38800055 TT - TLR1 Frame_Shift_Del p.K133Rfs*22 0.45 TCGA-CG-4306-01 4 39077615 39077615 C A KLHL5 Silent p.S184S 0.19 TCGA-CG-4306-01 4 47538491 47538491 T - ATP10D Frame_Shift_Del p.F353Sfs*24 0.26 TCGA-CG-4306-01 4 48038331 48038331 T - NIPAL1 3'UTR 0.28 TCGA-CG-4306-01 4 5016866 5016866 G A CYTL1 3'UTR 0.34 TCGA-CG-4306-01 4 54439943 54439943 G A LNX1 Missense_Mutation p.P76L 0.24 deleterious(0) probably_damaging(1) TCGA-CG-4306-01 4 619512 619512 G A PDE6B Missense_Mutation p.A33T 0.14 tolerated(0.15) benign(0.046) TCGA-CG-4306-01 4 619707 619707 C T PDE6B Missense_Mutation p.R98C 0.22 deleterious(0) probably_damaging(1) TCGA-CG-4306-01 4 62800606 62800606 G A LPHN3 Missense_Mutation p.A653T 0.25 tolerated(0.05) possibly_damaging(0.781) TCGA-CG-4306-01 4 6296857 6296857 G A WFS1 Missense_Mutation p.D268N 0.25 tolerated(0.18) possibly_damaging(0.576) TCGA-CG-4306-01 4 66233137 66233137 C T EPHA5 Missense_Mutation p.C621Y 0.24 tolerated(0.1) probably_damaging(0.982) TCGA-CG-4306-01 4 66467646 66467646 T - EPHA5 Frame_Shift_Del p.K208Rfs*60 0.23 TCGA-CG-4306-01 4 6925426 6925426 G A TBC1D14 Missense_Mutation p.A104T 0.24 tolerated_low_confidence(0.1) benign(0.035) TCGA-CG-4306-01 4 7043869 7043869 G A CCDC96 Missense_Mutation p.A266V 0.23 tolerated(0.12) benign(0.05) TCGA-CG-4306-01 4 71654646 71654646 G T RUFY3 Missense_Mutation p.D399Y 0.25 deleterious(0) probably_damaging(0.986) TCGA-CG-4306-01 4 73149282 73149282 T C ADAMTS3 Silent p.L1063L 0.23 TCGA-CG-4306-01 4 73205406 73205406 C T ADAMTS3 Silent p.S222S 0.27 TCGA-CG-4306-01 4 7802370 7802370 G A AFAP1 Silent p.N355N 0.24 TCGA-CG-4306-01 4 8089996 8089996 G - ABLIM2 Frame_Shift_Del p.D120Tfs*3 0.29 TCGA-CG-4306-01 4 8477713 8477715 GAA - TRMT44 In_Frame_Del p.K755del 0.36 TCGA-CG-4306-01 4 85593840 85593840 G A WDFY3 3'UTR 0.14 TCGA-CG-4306-01 4 88420707 88420707 A - SPARCL1 Frame_Shift_Del p.F7Sfs*29 0.24 TCGA-CG-4306-01 4 89028360 89028360 T - ABCG2 Frame_Shift_Del p.N418Mfs*16 0.22 TCGA-CG-4306-01 4 89326038 89326038 C G HERC6 Missense_Mutation p.S368C 0.26 tolerated(0.08) possibly_damaging(0.759) TCGA-CG-4306-01 4 94032033 94032033 C T GRID2 Missense_Mutation p.R222C 0.26 deleterious(0) probably_damaging(0.973) TCGA-CG-4306-01 5 10681222 10681222 G A DAP Silent p.S85S 0.27 TCGA-CG-4306-01 5 110446870 110446870 G A WDR36 Missense_Mutation p.G593S 0.19 tolerated(0.81) benign(0.215) TCGA-CG-4306-01 5 11082891 11082891 C T CTNND2 Missense_Mutation p.R902Q 0.27 tolerated(0.05) probably_damaging(0.944) TCGA-CG-4306-01 5 110835566 110835566 T C STARD4 3'UTR 0.23 TCGA-CG-4306-01 5 112175150 112175150 A C APC Missense_Mutation p.I1287L 0.29 benign(0.003) TCGA-CG-4306-01 5 112176568 112176568 A C APC Silent p.A1759A 0.25 TCGA-CG-4306-01 5 112364669 112364669 T C MCC Silent p.Q947Q 0.24 TCGA-CG-4306-01 5 121488178 121488178 C A ZNF474 Missense_Mutation p.L165M 0.27 deleterious(0) probably_damaging(0.999) TCGA-CG-4306-01 5 126776468 126776468 G A MEGF10 Silent p.L757L 0.18 TCGA-CG-4306-01 5 128359405 128359405 T C SLC27A6 Splice_Site p.X419_splice 0.20 TCGA-CG-4306-01 5 129241165 129241165 G A CHSY3 Missense_Mutation p.G215S 0.27 tolerated(1) benign(0.003) TCGA-CG-4306-01 5 131013370 131013370 A G FNIP1 Intron 0.27 TCGA-CG-4306-01 5 131305865 131305865 C T ACSL6 Missense_Mutation p.C488Y 0.21 deleterious(0) probably_damaging(0.956) TCGA-CG-4306-01 5 131329888 131329888 G A ACSL6 Nonsense_Mutation p.R36* 0.30 TCGA-CG-4306-01 5 131911487 131911487 G A RAD50 Missense_Mutation p.V78M 0.16 deleterious(0) probably_damaging(1) TCGA-CG-4306-01 5 132270345 132270345 C T AFF4 Missense_Mutation p.A138T 0.30 tolerated(0.6) benign(0.235) TCGA-CG-4306-01 5 134305722 134305722 G A CATSPER3 Silent p.A64A 0.25 TCGA-CG-4306-01 5 134346089 134346089 T C CATSPER3 Silent p.S321S 0.21 TCGA-CG-4306-01 5 13735996 13735996 C T DNAH5 Missense_Mutation p.R3834H 0.18 possibly_damaging(0.522) TCGA-CG-4306-01 5 137803102 137803102 C T EGR1 Missense_Mutation p.R322C 0.24 deleterious(0) unknown(0) TCGA-CG-4306-01 5 138287504 138287504 C T SIL1 Silent p.T279T 0.18 TCGA-CG-4306-01 5 139060917 139060917 G A CXXC5 Missense_Mutation p.R270Q 0.21 tolerated(0.15) possibly_damaging(0.74) TCGA-CG-4306-01 5 140176951 140176951 T C PCDHA2 Intron 0.27 TCGA-CG-4306-01 5 140202504 140202504 G A PCDHA5 Missense_Mutation p.G382R 0.22 deleterious_low_confidence(0.01) probably_damaging(0.962) TCGA-CG-4306-01 5 140242763 140242763 C A AC005609.1 Silent p.T71T 0.22 TCGA-CG-4306-01 5 140346615 140346615 C T PCDHAC2 Silent p.R88R 0.06 TCGA-CG-4306-01 5 140558711 140558711 G A PCDHB8 Missense_Mutation p.V366I 0.08 tolerated_low_confidence(0.1) benign(0.062) TCGA-CG-4306-01 5 140564305 140564305 G A PCDHB16 Missense_Mutation p.R724H 0.24 tolerated_low_confidence(0.12) benign(0.381) TCGA-CG-4306-01 5 140573738 140573738 C - PCDHB10 Frame_Shift_Del p.A540Rfs*2 0.16 TCGA-CG-4306-01 5 140574260 140574260 C T PCDHB10 Missense_Mutation p.A712V 0.12 tolerated_low_confidence(0.13) benign(0.172) TCGA-CG-4306-01 5 140604888 140604888 A G PCDHB14 Missense_Mutation p.Y604C 0.13 deleterious_low_confidence(0) benign(0.047) TCGA-CG-4306-01 5 140683317 140683317 G A SLC25A2 Missense_Mutation p.T39M 0.07 deleterious(0) possibly_damaging(0.848) TCGA-CG-4306-01 5 140712162 140712162 G A PCDHGA1 Silent p.A637A 0.10 TCGA-CG-4306-01 5 140745766 140745766 G A PCDHGA5 Silent p.T623T 0.20 TCGA-CG-4306-01 5 140792807 140792807 T A PCDHGA10 Missense_Mutation p.L22H 0.26 deleterious_low_confidence(0.04) possibly_damaging(0.498) TCGA-CG-4306-01 5 140794633 140794633 C T PCDHGA10 Missense_Mutation p.R631C 0.16 deleterious_low_confidence(0.02) possibly_damaging(0.72) TCGA-CG-4306-01 5 141052704 141052705 GA - ARAP3 Intron 0.22 TCGA-CG-4306-01 5 141243184 141243184 C A PCDH1 Missense_Mutation p.K904N 0.26 tolerated(0.07) probably_damaging(0.999) TCGA-CG-4306-01 5 142273906 142273906 T G ARHGAP26 Missense_Mutation p.V197G 0.25 deleterious(0) possibly_damaging(0.637) TCGA-CG-4306-01 5 149498364 149498364 G - PDGFRB Frame_Shift_Del p.F951Sfs*28 0.13 TCGA-CG-4306-01 5 149498404 149498404 A G PDGFRB Missense_Mutation p.M937T 0.11 deleterious(0) probably_damaging(0.999) TCGA-CG-4306-01 5 149602647 149602647 G A CAMK2A Silent p.T457T 0.24 TCGA-CG-4306-01 5 150923356 150923357 - T FAT2 Frame_Shift_Ins p.H2445Afs*14 0.25 TCGA-CG-4306-01 5 150946634 150946634 G A FAT2 Missense_Mutation p.S620F 0.20 benign(0.236) TCGA-CG-4306-01 5 156482260 156482260 C T HAVCR1 Missense_Mutation p.G111R 0.24 deleterious(0.05) probably_damaging(0.968) TCGA-CG-4306-01 5 156747709 156747709 C T CYFIP2 Nonsense_Mutation p.R498* 0.09 TCGA-CG-4306-01 5 159680793 159680793 G A CCNJL Silent p.N300N 0.23 TCGA-CG-4306-01 5 164028132 164028132 A G CTC-340A15.2 RNA 0.30 TCGA-CG-4306-01 5 167835607 167835607 G A WWC1 Silent p.P272P 0.23 TCGA-CG-4306-01 5 171781005 171781007 CTC - SH3PXD2B In_Frame_Del p.E224del 0.26 TCGA-CG-4306-01 5 176024847 176024847 T C GPRIN1 Silent p.T663T 0.29 TCGA-CG-4306-01 5 176025084 176025084 C T GPRIN1 Silent p.P584P 0.24 TCGA-CG-4306-01 5 176305271 176305271 G - UNC5A Frame_Shift_Del p.G634Dfs*3 0.16 TCGA-CG-4306-01 5 176765576 176765576 C T LMAN2 Missense_Mutation p.V116I 0.20 tolerated(0.11) probably_damaging(0.989) TCGA-CG-4306-01 5 176868791 176868792 - C GRK6 Frame_Shift_Ins p.Q580Pfs*24 0.18 TCGA-CG-4306-01 5 180622450 180622450 C T TRIM7 Missense_Mutation p.V418M 0.39 deleterious(0) probably_damaging(1) TCGA-CG-4306-01 5 24487659 24487659 A - CDH10 3'UTR 0.19 TCGA-CG-4306-01 5 31799500 31799500 A G PDZD2 Missense_Mutation p.N49D 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-CG-4306-01 5 32048734 32048734 C T PDZD2 Nonsense_Mutation p.R537* 0.22 TCGA-CG-4306-01 5 32355834 32355834 T - ZFR 3'UTR 0.23 TCGA-CG-4306-01 5 3601109 3601109 G A IRX1 Silent p.P466P 0.27 TCGA-CG-4306-01 5 5303789 5303789 C T ADAMTS16 Silent p.S1032S 0.19 TCGA-CG-4306-01 5 54696084 54696084 C T SKIV2L2 Silent p.D772D 0.32 TCGA-CG-4306-01 5 56179395 56179395 G A MAP3K1 Silent p.P1236P 0.26 TCGA-CG-4306-01 5 56189570 56189570 G T MAP3K1 3'UTR 0.21 TCGA-CG-4306-01 5 57753012 57753012 A - PLK2 Frame_Shift_Del p.L335Cfs*68 0.25 TCGA-CG-4306-01 5 64020271 64020272 - T SREK1IP1 Frame_Shift_Ins p.K137Efs*12 0.19 TCGA-CG-4306-01 5 68398896 68398896 T - SLC30A5 Frame_Shift_Del p.F73Lfs*47 0.22 TCGA-CG-4306-01 5 73045775 73045775 C T ARHGEF28 Silent p.R49R 0.26 TCGA-CG-4306-01 5 74062981 74062981 C T GFM2 5'UTR 0.25 TCGA-CG-4306-01 5 74681788 74681788 G A COL4A3BP Silent p.G580G 0.32 TCGA-CG-4306-01 5 76012518 76012518 G A F2R Intron 0.10 TCGA-CG-4306-01 5 76331657 76331657 C A AGGF1 Intron 0.20 TCGA-CG-4306-01 5 79746297 79746297 T C ZFYVE16 Silent p.L1092L 0.27 TCGA-CG-4306-01 5 80256573 80256573 C T RASGRF2 Missense_Mutation p.R6C 0.30 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CG-4306-01 5 82352827 82352827 C A TMEM167A 3'UTR 0.28 TCGA-CG-4306-01 5 825347 825347 G - ZDHHC11 Frame_Shift_Del p.L319Cfs*2 0.18 TCGA-CG-4306-01 5 82940461 82940461 G A HAPLN1 Nonsense_Mutation p.R166* 0.23 TCGA-CG-4306-01 5 86668007 86668007 C T RASA1 Missense_Mutation p.R591C 0.21 deleterious(0) probably_damaging(0.982) TCGA-CG-4306-01 5 88025035 88025035 C T MEF2C Missense_Mutation p.E332K 0.26 deleterious(0) probably_damaging(0.997) TCGA-CG-4306-01 5 9052130 9052130 C T SEMA5A Silent p.S900S 0.33 TCGA-CG-4306-01 5 96232084 96232085 - T ERAP2 Frame_Shift_Ins p.L418Ffs*6 0.26 TCGA-CG-4306-01 5 98115403 98115403 C T RGMB Missense_Mutation p.R127C 0.03 deleterious(0) probably_damaging(1) TCGA-CG-4306-01 6 107035691 107035691 C T RTN4IP1 Missense_Mutation p.A285T 0.27 deleterious(0.02) probably_damaging(0.965) TCGA-CG-4306-01 6 10902994 10902994 A T SYCP2L Missense_Mutation p.E184V 0.22 deleterious(0) probably_damaging(1) TCGA-CG-4306-01 6 109814598 109814599 - GA AK9 Frame_Shift_Ins p.R1904Sfs*4 0.22 TCGA-CG-4306-01 6 110538952 110538952 C T CDC40 Nonsense_Mutation p.Q346* 0.12 TCGA-CG-4306-01 6 110620349 110620349 C A METTL24 Nonsense_Mutation p.G188* 0.31 TCGA-CG-4306-01 6 111983105 111983105 C A FYN Missense_Mutation p.R484M 0.27 deleterious(0) probably_damaging(0.979) TCGA-CG-4306-01 6 112455712 112455712 C A LAMA4 Missense_Mutation p.D1172Y 0.20 deleterious(0) probably_damaging(1) TCGA-CG-4306-01 6 116950769 116950771 GAA - RSPH4A In_Frame_Del p.E573del 0.21 TCGA-CG-4306-01 6 117884469 117884469 C T GOPC Missense_Mutation p.G446D 0.23 tolerated_low_confidence(0.11) benign(0.021) TCGA-CG-4306-01 6 125284072 125284072 C - RP11-510H23.1 RNA 0.30 TCGA-CG-4306-01 6 125541338 125541338 A G TPD52L1 Missense_Mutation p.Q45R 0.31 deleterious(0.01) benign(0.314) TCGA-CG-4306-01 6 129785509 129785509 G A LAMA2 Missense_Mutation p.R2356H 0.24 deleterious(0) probably_damaging(0.994) TCGA-CG-4306-01 6 1313402 1313402 T - FOXQ1 Frame_Shift_Del p.F156Sfs*247 0.29 TCGA-CG-4306-01 6 13365583 13365583 C T GFOD1 Missense_Mutation p.G189S 0.25 tolerated(0.21) benign(0.064) TCGA-CG-4306-01 6 135317929 135317929 G A HBS1L Silent p.G317G 0.14 TCGA-CG-4306-01 6 136687112 136687112 G A MAP7 Missense_Mutation p.P367L 0.18 deleterious(0) benign(0.195) TCGA-CG-4306-01 6 136878801 136878801 C T MAP3K5 3'UTR 0.31 TCGA-CG-4306-01 6 137322794 137322794 G T IL20RA Silent p.L521L 0.26 TCGA-CG-4306-01 6 146720132 146720132 A G GRM1 Missense_Mutation p.T653A 0.25 tolerated(0.14) benign(0.217) TCGA-CG-4306-01 6 146755775 146755775 C A GRM1 Missense_Mutation p.P1143H 0.29 deleterious_low_confidence(0.03) possibly_damaging(0.76) TCGA-CG-4306-01 6 147637446 147637446 G A STXBP5 Missense_Mutation p.V569M 0.23 tolerated(0.34) benign(0.202) TCGA-CG-4306-01 6 149285641 149285641 G A UST Missense_Mutation p.R208K 0.24 tolerated(0.3) benign(0.105) TCGA-CG-4306-01 6 153019117 153019117 T - MYCT1 Frame_Shift_Del p.F29Sfs*28 0.09 TCGA-CG-4306-01 6 15497312 15497312 G A JARID2 Missense_Mutation p.R619Q 0.12 deleterious(0.04) benign(0.026) TCGA-CG-4306-01 6 160230165 160230165 T C PNLDC1 Missense_Mutation p.F242S 0.04 deleterious(0) probably_damaging(0.997) TCGA-CG-4306-01 6 161557534 161557535 - C AGPAT4 3'UTR 0.30 TCGA-CG-4306-01 6 161990428 161990428 T A PARK2 Missense_Mutation p.I298F 0.19 deleterious(0) benign(0.143) TCGA-CG-4306-01 6 168461462 168461463 - G FRMD1 Frame_Shift_Ins p.S441Qfs*5 0.28 TCGA-CG-4306-01 6 169629684 169629684 C T THBS2 Missense_Mutation p.G748S 0.23 deleterious(0.05) benign(0.074) TCGA-CG-4306-01 6 169632789 169632789 G A THBS2 Silent p.V634V 0.20 TCGA-CG-4306-01 6 170104005 170104006 - A PHF10 3'UTR 0.42 TCGA-CG-4306-01 6 170151559 170151559 C T TCTE3 5'UTR 0.19 TCGA-CG-4306-01 6 170592160 170592160 C T DLL1 Silent p.S694S 0.27 TCGA-CG-4306-01 6 18122226 18122226 A - NHLRC1 Frame_Shift_Del p.F204Lfs*28 0.30 TCGA-CG-4306-01 6 24448144 24448144 C T GPLD1 Missense_Mutation p.V547M 0.21 deleterious(0) probably_damaging(0.995) TCGA-CG-4306-01 6 24450073 24450073 C T GPLD1 Missense_Mutation p.V464M 0.20 tolerated(0.08) benign(0.223) TCGA-CG-4306-01 6 24873113 24873113 C T FAM65B Missense_Mutation p.R111H 0.20 deleterious(0) probably_damaging(0.999) TCGA-CG-4306-01 6 26476605 26476605 T C BTN2A1 3'UTR 0.18 TCGA-CG-4306-01 6 28540659 28540659 G A SCAND3 Nonsense_Mutation p.R1003* 0.25 TCGA-CG-4306-01 6 28971699 28971699 T C ZNF311 Intron 0.24 TCGA-CG-4306-01 6 29274617 29274617 C T OR14J1 Missense_Mutation p.R51C 0.26 tolerated(0.12) benign(0.39) TCGA-CG-4306-01 6 29429649 29429649 T C OR2H1 Silent p.L35L 0.20 TCGA-CG-4306-01 6 29429651 29429651 G A OR2H1 Silent p.L35L 0.19 TCGA-CG-4306-01 6 29429657 29429657 G A OR2H1 Silent p.L37L 0.19 TCGA-CG-4306-01 6 29599254 29599254 C - GABBR1 Frame_Shift_Del p.E70Sfs*36 0.34 TCGA-CG-4306-01 6 30621048 30621048 T - DHX16 Frame_Shift_Del p.I1033* 0.26 TCGA-CG-4306-01 6 30671304 30671304 G A MDC1 Missense_Mutation p.T1858I 0.24 tolerated(1) benign(0.001) TCGA-CG-4306-01 6 30887543 30887543 C T VARS2 Silent p.H391H 0.23 TCGA-CG-4306-01 6 31124699 31124699 G - CCHCR1 Frame_Shift_Del p.S103Pfs*38 0.28 TCGA-CG-4306-01 6 31324917 31324917 G - HLA-B Frame_Shift_Del p.R7Efs*13 0.24 TCGA-CG-4306-01 6 31868847 31868847 C T ZBTB12 Missense_Mutation p.R79H 0.23 tolerated(0.07) possibly_damaging(0.812) TCGA-CG-4306-01 6 32159229 32159230 - C GPSM3 Frame_Shift_Ins p.Q133Afs*84 0.24 TCGA-CG-4306-01 6 33154509 33154510 - C COL11A2 Frame_Shift_Ins p.Q232Pfs*41 0.23 TCGA-CG-4306-01 6 33380050 33380050 C - PHF1 Frame_Shift_Del p.R6Gfs*2 0.36 TCGA-CG-4306-01 6 34029714 34029714 C T GRM4 Silent p.S276S 0.20 TCGA-CG-4306-01 6 34210525 34210525 C T HMGA1 Missense_Mutation p.R58W 0.17 tolerated(0.09) benign(0.133) TCGA-CG-4306-01 6 35259413 35259413 G A ZNF76 Missense_Mutation p.R277H 0.05 deleterious(0) probably_damaging(0.999) TCGA-CG-4306-01 6 39874786 39874786 C T MOCS1 3'UTR 0.25 TCGA-CG-4306-01 6 41774419 41774419 C T USP49 Silent p.A101A 0.25 TCGA-CG-4306-01 6 43019980 43019980 G A CUL7 Missense_Mutation p.R235W 0.33 deleterious(0) probably_damaging(0.947) TCGA-CG-4306-01 6 44116118 44116118 G A TMEM63B Missense_Mutation p.A373T 0.20 tolerated(0.59) probably_damaging(0.995) TCGA-CG-4306-01 6 44122149 44122150 - CCC TMEM63B In_Frame_Ins p.P760dup 0.08 TCGA-CG-4306-01 6 49459995 49459995 T - CENPQ 3'UTR 0.40 TCGA-CG-4306-01 6 49586939 49586939 C A RHAG Missense_Mutation p.Q98H 0.25 deleterious(0.01) probably_damaging(0.986) TCGA-CG-4306-01 6 52661013 52661013 T C GSTA1 Missense_Mutation p.N80S 0.24 tolerated(0.06) benign(0.002) TCGA-CG-4306-01 6 54805455 54805455 C T FAM83B Silent p.G562G 0.25 TCGA-CG-4306-01 6 54805606 54805606 A G FAM83B Missense_Mutation p.T613A 0.24 tolerated(0.18) benign(0.001) TCGA-CG-4306-01 6 599180 599180 C T EXOC2 Missense_Mutation p.R263Q 0.26 deleterious(0.02) possibly_damaging(0.885) TCGA-CG-4306-01 6 71162259 71162259 T A FAM135A Missense_Mutation p.L48M 0.20 deleterious(0) possibly_damaging(0.821) TCGA-CG-4306-01 6 71665875 71665875 C T B3GAT2 Silent p.T86T 0.14 TCGA-CG-4306-01 6 74110047 74110047 A - DDX43 Frame_Shift_Del p.K134Sfs*2 0.21 TCGA-CG-4306-01 6 74228320 74228320 A G EEF1A1 Silent p.V262V 0.25 TCGA-CG-4306-01 6 75797396 75797397 - G COL12A1 Frame_Shift_Ins p.G3027Wfs*19 0.21 TCGA-CG-4306-01 6 75839937 75839937 C T COL12A1 Missense_Mutation p.G2027E 0.17 probably_damaging(1) TCGA-CG-4306-01 6 7584027 7584027 A - DSP Frame_Shift_Del p.K2179Rfs*8 0.18 TCGA-CG-4306-01 6 76640734 76640734 G A IMPG1 Missense_Mutation p.P727S 0.23 tolerated(0.08) benign(0.01) TCGA-CG-4306-01 6 78172202 78172202 C T HTR1B Missense_Mutation p.A307T 0.14 tolerated(0.28) possibly_damaging(0.85) TCGA-CG-4306-01 6 78172495 78172495 G A HTR1B Missense_Mutation p.T209M 0.27 deleterious(0.02) probably_damaging(0.99) TCGA-CG-4306-01 6 7880637 7880637 A - BMP6 3'UTR 0.27 TCGA-CG-4306-01 6 90397120 90397120 C A MDN1 Missense_Mutation p.R3798L 0.16 possibly_damaging(0.494) TCGA-CG-4306-01 6 90402222 90402222 G A MDN1 Silent p.H3509H 0.23 TCGA-CG-4306-01 6 90428683 90428683 G A MDN1 Silent p.L2042L 0.27 TCGA-CG-4306-01 6 90432675 90432676 TT - MDN1 Frame_Shift_Del p.K1989Gfs*28 0.27 TCGA-CG-4306-01 6 97620979 97620979 T - MMS22L Frame_Shift_Del p.V934Ffs*8 0.33 TCGA-CG-4306-01 7 100608742 100608742 C T MUC3A Silent p.R707R 0.08 TCGA-CG-4306-01 7 100806691 100806693 CTC - VGF In_Frame_Del p.E478del 0.20 TCGA-CG-4306-01 7 101755048 101755048 C T CUX1 Nonsense_Mutation p.Q212* 0.22 TCGA-CG-4306-01 7 102738782 102738782 G A ARMC10 Missense_Mutation p.V272I 0.18 tolerated(0.49) benign(0.106) TCGA-CG-4306-01 7 102912302 102912302 A G DPY19L2P2 RNA 0.09 TCGA-CG-4306-01 7 103163896 103163896 C T RELN Missense_Mutation p.G2478R 0.21 deleterious(0) probably_damaging(1) TCGA-CG-4306-01 7 104681433 104681433 G A KMT2E Missense_Mutation p.A12T 0.25 tolerated_low_confidence(0.33) unknown(0) TCGA-CG-4306-01 7 107703394 107703394 G - LAMB4 Frame_Shift_Del p.P1036Lfs*68 0.12 TCGA-CG-4306-01 7 114304351 114304351 A G FOXP2 Silent p.L646L 0.22 TCGA-CG-4306-01 7 11521445 11521445 G A THSD7A Nonsense_Mutation p.R663* 0.27 TCGA-CG-4306-01 7 12668733 12668733 G A SCIN Missense_Mutation p.R402H 0.24 deleterious(0) probably_damaging(1) TCGA-CG-4306-01 7 127224963 127224963 C T GCC1 Missense_Mutation p.E92K 0.18 tolerated(0.11) benign(0.068) TCGA-CG-4306-01 7 127447556 127447556 C T SND1 Missense_Mutation p.R391C 0.22 deleterious(0) probably_damaging(0.998) TCGA-CG-4306-01 7 127670140 127670140 T A LRRC4 Missense_Mutation p.E185V 0.16 tolerated(0.12) benign(0.135) TCGA-CG-4306-01 7 128845210 128845210 C T SMO Missense_Mutation p.A235V 0.32 deleterious(0.04) benign(0.44) TCGA-CG-4306-01 7 128845574 128845574 C T SMO Nonsense_Mutation p.R291* 0.29 TCGA-CG-4306-01 7 132192529 132192529 G A PLXNA4 Silent p.R308R 0.18 TCGA-CG-4306-01 7 132192530 132192530 C A PLXNA4 Missense_Mutation p.R308L 0.17 deleterious(0) probably_damaging(0.999) TCGA-CG-4306-01 7 134617839 134617839 C T CALD1 Missense_Mutation p.R107C 0.23 deleterious(0) unknown(0) TCGA-CG-4306-01 7 134635160 134635160 G A CALD1 Silent p.R610R 0.24 TCGA-CG-4306-01 7 138487859 138487859 G A TMEM213 3'UTR 0.29 TCGA-CG-4306-01 7 140285478 140285478 T C DENND2A Missense_Mutation p.I386V 0.24 tolerated(0.61) benign(0.012) TCGA-CG-4306-01 7 141443711 141443711 G A SSBP1 Missense_Mutation p.S79N 0.20 tolerated(0.13) benign(0.012) TCGA-CG-4306-01 7 142111392 142111392 G A TRBV5-7 3'Flank 0.23 TCGA-CG-4306-01 7 142983891 142983891 T - TMEM139 Frame_Shift_Del p.Y209Mfs*10 0.20 TCGA-CG-4306-01 7 143510058 143510058 T C RP11-61L23.2 RNA 0.09 TCGA-CG-4306-01 7 144098304 144098304 G A NOBOX Missense_Mutation p.R227C 0.23 tolerated(0.08) benign(0.018) TCGA-CG-4306-01 7 149129019 149129019 C T ZNF777 Missense_Mutation p.E782K 0.26 tolerated(0.12) possibly_damaging(0.849) TCGA-CG-4306-01 7 149129035 149129035 C T ZNF777 Silent p.R776R 0.12 TCGA-CG-4306-01 7 149255734 149255734 G A ZNF767 RNA 0.12 TCGA-CG-4306-01 7 150558259 150558259 C - AOC1 Frame_Shift_Del p.P741Lfs*54 0.24 TCGA-CG-4306-01 7 150732996 150732996 G A ABCB8 Missense_Mutation p.E319K 0.12 deleterious(0) probably_damaging(1) TCGA-CG-4306-01 7 150751541 150751541 G A CDK5 Missense_Mutation p.T221M 0.26 deleterious(0) probably_damaging(0.941) TCGA-CG-4306-01 7 150771346 150771346 G A SLC4A2 Missense_Mutation p.R919H 0.29 deleterious(0) benign(0.196) TCGA-CG-4306-01 7 150935383 150935383 C - CHPF2 Frame_Shift_Del p.S648Pfs*13 0.26 TCGA-CG-4306-01 7 151856008 151856009 - T KMT2C Frame_Shift_Ins p.D3871Gfs*11 0.19 TCGA-CG-4306-01 7 151874700 151874701 - G KMT2C Frame_Shift_Ins p.Q2613Pfs*5 0.23 TCGA-CG-4306-01 7 151879075 151879075 G A KMT2C Missense_Mutation p.T1957M 0.20 benign(0.043) TCGA-CG-4306-01 7 155301590 155301590 G A CNPY1 Missense_Mutation p.A48V 0.23 deleterious(0.02) possibly_damaging(0.582) TCGA-CG-4306-01 7 155503962 155503962 G A RBM33 Silent p.P338P 0.19 TCGA-CG-4306-01 7 157178407 157178407 T - DNAJB6 Intron 0.25 TCGA-CG-4306-01 7 2625867 2625867 G A IQCE Missense_Mutation p.A284T 0.32 tolerated(0.31) benign(0.001) TCGA-CG-4306-01 7 27135012 27135012 C A HOXA1 Missense_Mutation p.A174S 0.29 tolerated(0.34) benign(0.038) TCGA-CG-4306-01 7 27237864 27237864 T C HOXA13 Missense_Mutation p.R374G 0.24 deleterious(0) probably_damaging(0.998) TCGA-CG-4306-01 7 27868497 27868501 AAAAC - TAX1BP1 3'UTR 0.18 TCGA-CG-4306-01 7 29134756 29134756 G A CPVL Missense_Mutation p.R136C 0.23 tolerated(0.07) benign(0.01) TCGA-CG-4306-01 7 2953041 2953041 G A CARD11 Missense_Mutation p.R967C 0.27 deleterious(0.01) possibly_damaging(0.453) TCGA-CG-4306-01 7 30492371 30492371 G A NOD1 Missense_Mutation p.T221M 0.24 deleterious(0.05) possibly_damaging(0.836) TCGA-CG-4306-01 7 31124942 31124942 G A ADCYAP1R1 Missense_Mutation p.R185H 0.29 deleterious(0) probably_damaging(1) TCGA-CG-4306-01 7 31792965 31792965 C T PDE1C 3'UTR 0.06 TCGA-CG-4306-01 7 4011175 4011175 A G SDK1 Missense_Mutation p.T598A 0.11 tolerated(0.06) benign(0.034) TCGA-CG-4306-01 7 4091419 4091419 C T SDK1 Silent p.D956D 0.17 TCGA-CG-4306-01 7 42005764 42005764 G T GLI3 Silent p.A969A 0.37 TCGA-CG-4306-01 7 43484841 43484841 G A HECW1 Silent p.T690T 0.16 TCGA-CG-4306-01 7 44801116 44801116 C T ZMIZ2 Missense_Mutation p.R437C 0.23 deleterious(0.01) probably_damaging(0.997) TCGA-CG-4306-01 7 4828500 4828500 C A AP5Z1 Missense_Mutation p.P542H 0.24 deleterious(0.03) probably_damaging(0.917) TCGA-CG-4306-01 7 49977188 49977188 C T ZPBP Missense_Mutation p.R331H 0.20 tolerated(0.25) benign(0.016) TCGA-CG-4306-01 7 50683938 50683938 C T GRB10 Missense_Mutation p.G318D 0.18 deleterious(0) probably_damaging(1) TCGA-CG-4306-01 7 5541183 5541183 G - FBXL18 Frame_Shift_Del p.G240Afs*63 0.22 TCGA-CG-4306-01 7 55479657 55479657 T C LANCL2 Missense_Mutation p.Y295H 0.07 tolerated(0.1) probably_damaging(1) TCGA-CG-4306-01 7 55990944 55990944 C T MRPS17 Silent p.D46D 0.30 TCGA-CG-4306-01 7 6204578 6204578 T - CYTH3 Frame_Shift_Del p.K399Nfs*6 0.22 TCGA-CG-4306-01 7 6474590 6474590 T C DAGLB Missense_Mutation p.K161E 0.22 tolerated(0.25) benign(0.017) TCGA-CG-4306-01 7 65557802 65557802 G T ASL Missense_Mutation p.S433I 0.25 deleterious(0.01) probably_damaging(1) TCGA-CG-4306-01 7 6628377 6628377 T C ZDHHC4 Missense_Mutation p.Y291H 0.26 tolerated(0.22) benign(0.024) TCGA-CG-4306-01 7 71130562 71130562 C T WBSCR17 Missense_Mutation p.A416V 0.21 deleterious(0.02) probably_damaging(0.97) TCGA-CG-4306-01 7 73010969 73010969 C T MLXIPL Missense_Mutation p.G608S 0.28 deleterious(0.04) benign(0.362) TCGA-CG-4306-01 7 73246063 73246063 G - CLDN4 Frame_Shift_Del p.L180Cfs*115 0.20 TCGA-CG-4306-01 7 76631570 76631570 T C UPK3B Intron 0.35 TCGA-CG-4306-01 7 79082653 79082653 G A MAGI2 5'UTR 0.05 TCGA-CG-4306-01 7 82582682 82582682 T C PCLO Missense_Mutation p.I2529M 0.11 unknown(0) TCGA-CG-4306-01 7 82582944 82582944 T - PCLO Frame_Shift_Del p.K2442Sfs*2 0.23 TCGA-CG-4306-01 7 82583741 82583741 G A PCLO Silent p.V2176V 0.22 TCGA-CG-4306-01 7 83029537 83029537 G A SEMA3E Silent p.Y391Y 0.26 TCGA-CG-4306-01 7 94039080 94039080 G A COL1A2 Missense_Mutation p.G328S 0.21 unknown(0) TCGA-CG-4306-01 7 99717402 99717402 T - CNPY4 Frame_Shift_Del p.L14Wfs*11 0.26 TCGA-CG-4306-01 8 100866034 100866034 A G VPS13B Missense_Mutation p.K3498E 0.22 deleterious(0.01) benign(0.292) TCGA-CG-4306-01 8 10468839 10468839 G A RP1L1 Silent p.S923S 0.29 TCGA-CG-4306-01 8 10470600 10470600 C T RP1L1 Silent p.T336T 0.27 TCGA-CG-4306-01 8 105509306 105509306 T A LRP12 Nonsense_Mutation p.R492* 0.20 TCGA-CG-4306-01 8 113668504 113668504 C T CSMD3 Silent p.L961L 0.14 TCGA-CG-4306-01 8 11637219 11637219 C T NEIL2 Missense_Mutation p.A84V 0.26 tolerated(0.42) benign(0.001) TCGA-CG-4306-01 8 12586437 12586437 G A LONRF1 Silent p.A661A 0.23 TCGA-CG-4306-01 8 142366924 142366924 G A GPR20 3'UTR 0.18 TCGA-CG-4306-01 8 142445309 142445309 C T PTP4A3 3'Flank 0.21 TCGA-CG-4306-01 8 143570403 143570403 T C BAI1 Silent p.D820D 0.16 TCGA-CG-4306-01 8 144945705 144945705 G T EPPK1 Missense_Mutation p.L573M 0.22 probably_damaging(0.998) TCGA-CG-4306-01 8 144999478 144999478 T G PLEC Missense_Mutation p.E1677A 0.25 unknown(0) TCGA-CG-4306-01 8 145109481 145109481 C - OPLAH Frame_Shift_Del p.G890Afs*8 0.16 TCGA-CG-4306-01 8 2041865 2041865 G A MYOM2 Missense_Mutation p.G691E 0.28 deleterious(0) probably_damaging(1) TCGA-CG-4306-01 8 21608381 21608381 A G GFRA2 Silent p.N171N 0.22 TCGA-CG-4306-01 8 21853019 21853019 C T XPO7 Missense_Mutation p.P752S 0.31 tolerated(0.42) benign(0.004) TCGA-CG-4306-01 8 24167472 24167473 - A ADAM28 Frame_Shift_Ins p.N75Kfs*15 0.28 TCGA-CG-4306-01 8 27097669 27097669 G A STMN4 Missense_Mutation p.A137V 0.29 tolerated(0.05) possibly_damaging(0.777) TCGA-CG-4306-01 8 27516059 27516059 G T SCARA3 Missense_Mutation p.Q124H 0.21 tolerated(0.53) possibly_damaging(0.569) TCGA-CG-4306-01 8 28633400 28633400 G - INTS9 Frame_Shift_Del p.P480Qfs*10 0.26 TCGA-CG-4306-01 8 36721991 36721991 C T KCNU1 Missense_Mutation p.P654L 0.17 tolerated(0.25) benign(0.001) TCGA-CG-4306-01 8 37729675 37729675 G A RAB11FIP1 Missense_Mutation p.A882V 0.29 tolerated(0.11) benign(0.033) TCGA-CG-4306-01 8 418731 418731 G A FBXO25 Missense_Mutation p.C344Y 0.27 deleterious(0) probably_damaging(0.987) TCGA-CG-4306-01 8 42033662 42033662 G A PLAT Missense_Mutation p.S513L 0.38 deleterious(0) probably_damaging(1) TCGA-CG-4306-01 8 42252652 42252652 G A VDAC3 Splice_Site p.X39_splice 0.06 TCGA-CG-4306-01 8 53092689 53092689 A G ST18 Silent p.S90S 0.23 TCGA-CG-4306-01 8 53852517 53852517 C T NPBWR1 Missense_Mutation p.P17L 0.32 tolerated(0.17) benign(0) TCGA-CG-4306-01 8 61754314 61754314 G A CHD7 Splice_Site p.X1548_splice 0.26 TCGA-CG-4306-01 8 61764678 61764678 C T CHD7 Silent p.R1922R 0.23 TCGA-CG-4306-01 8 67064641 67064641 G A TRIM55 Missense_Mutation p.G339R 0.29 tolerated(0.68) benign(0.015) TCGA-CG-4306-01 8 71041179 71041179 C T NCOA2 Missense_Mutation p.D1121N 0.33 tolerated(0.07) benign(0.305) TCGA-CG-4306-01 8 73849334 73849334 C T KCNB2 Missense_Mutation p.P582S 0.25 tolerated_low_confidence(0.15) benign(0.155) TCGA-CG-4306-01 8 77896329 77896329 A G PEX2 Missense_Mutation p.L29P 0.22 deleterious(0) probably_damaging(1) TCGA-CG-4306-01 8 82572840 82572840 G A IMPA1 Missense_Mutation p.A269V 0.29 tolerated(0.09) possibly_damaging(0.859) TCGA-CG-4306-01 8 90770396 90770396 C T RIPK2 Silent p.R36R 0.22 TCGA-CG-4306-01 8 90967518 90967518 T C NBN Missense_Mutation p.K464E 0.03 deleterious(0.01) possibly_damaging(0.78) TCGA-CG-4306-01 8 95539535 95539535 G A KIAA1429 Missense_Mutation p.R313C 0.27 deleterious(0.05) possibly_damaging(0.806) TCGA-CG-4306-01 8 95686611 95686611 A - ESRP1 Frame_Shift_Del p.N512Tfs*2 0.23 TCGA-CG-4306-01 8 95796029 95796029 A G DPY19L4 Missense_Mutation p.N616S 0.19 tolerated(0.19) possibly_damaging(0.601) TCGA-CG-4306-01 8 97620628 97620628 C T SDC2 Silent p.A124A 0.23 TCGA-CG-4306-01 8 98699707 98699707 C T MTDH Missense_Mutation p.R207C 0.23 deleterious(0) probably_damaging(0.999) TCGA-CG-4306-01 9 100437696 100437697 - A XPA 3'UTR 0.26 TCGA-CG-4306-01 9 101125082 101125082 C - GABBR2 Frame_Shift_Del p.G603Afs*4 0.15 TCGA-CG-4306-01 9 102778630 102778630 G A ERP44 Nonsense_Mutation p.R246* 0.08 TCGA-CG-4306-01 9 102782969 102782969 C T ERP44 Silent p.S172S 0.19 TCGA-CG-4306-01 9 103213316 103213316 G A MSANTD3 3'UTR 0.25 TCGA-CG-4306-01 9 106862422 106862422 A - SMC2 Frame_Shift_Del p.I179* 0.14 TCGA-CG-4306-01 9 107289389 107289389 C T OR13C4 Missense_Mutation p.M34I 0.23 tolerated(0.1) probably_damaging(0.985) TCGA-CG-4306-01 9 109692859 109692859 C T ZNF462 Silent p.G1967G 0.25 TCGA-CG-4306-01 9 109694807 109694807 G A ZNF462 Silent p.S2031S 0.19 TCGA-CG-4306-01 9 110248069 110248069 G A KLF4 Missense_Mutation p.S468L 0.27 deleterious(0) probably_damaging(0.947) TCGA-CG-4306-01 9 113241917 113241917 T - SVEP1 Frame_Shift_Del p.M829Wfs*20 0.29 TCGA-CG-4306-01 9 115760546 115760546 T C ZNF883 RNA 0.20 TCGA-CG-4306-01 9 116152094 116152094 G A ALAD Silent p.S195S 0.25 TCGA-CG-4306-01 9 124962220 124962220 G A MORN5 3'UTR 0.25 TCGA-CG-4306-01 9 125377740 125377740 G A OR1Q1 Missense_Mutation p.G242S 0.32 tolerated(0.12) benign(0.177) TCGA-CG-4306-01 9 125797169 125797169 A G GPR21 Silent p.V108V 0.27 TCGA-CG-4306-01 9 12694160 12694160 G A TYRP1 Missense_Mutation p.R55H 0.30 tolerated(0.12) benign(0.232) TCGA-CG-4306-01 9 127262518 127262518 G A NR5A1 Missense_Mutation p.R241W 0.30 deleterious(0.02) possibly_damaging(0.799) TCGA-CG-4306-01 9 127289148 127289148 G A NR6A1 Missense_Mutation p.R371W 0.27 deleterious(0) probably_damaging(0.986) TCGA-CG-4306-01 9 130272446 130272446 G A FAM129B Silent p.G380G 0.22 TCGA-CG-4306-01 9 130507379 130507379 C T SH2D3C Splice_Site p.X422_splice 0.27 TCGA-CG-4306-01 9 131191074 131191074 C T CERCAM Missense_Mutation p.R309W 0.15 tolerated(0.1) benign(0.004) TCGA-CG-4306-01 9 131339206 131339207 - G SPTAN1 Frame_Shift_Ins p.A254Gfs*8 0.28 TCGA-CG-4306-01 9 131455924 131455924 C T SET Missense_Mutation p.T180M 0.26 tolerated(0.17) possibly_damaging(0.529) TCGA-CG-4306-01 9 132980141 132980142 - G NCS1 Frame_Shift_Ins p.Q42Afs*32 0.20 TCGA-CG-4306-01 9 133506076 133506076 C - FUBP3 Frame_Shift_Del p.P395Lfs*27 0.26 TCGA-CG-4306-01 9 133914292 133914292 C T LAMC3 Missense_Mutation p.R340W 0.26 tolerated(0.23) benign(0.081) TCGA-CG-4306-01 9 133942368 133942368 A G LAMC3 Missense_Mutation p.D790G 0.23 deleterious(0) probably_damaging(0.993) TCGA-CG-4306-01 9 135753607 135753607 G - AK8 Frame_Shift_Del p.E13Rfs*14 0.25 TCGA-CG-4306-01 9 135962338 135962338 C A CELP RNA 0.11 TCGA-CG-4306-01 9 136901415 136901415 C T BRD3 Missense_Mutation p.A559T 0.22 tolerated(0.54) benign(0.176) TCGA-CG-4306-01 9 138011370 138011370 T A OLFM1 Nonsense_Mutation p.Y250* 0.29 TCGA-CG-4306-01 9 139113734 139113734 G A QSOX2 Silent p.D243D 0.24 TCGA-CG-4306-01 9 139279234 139279234 T C SNAPC4 Missense_Mutation p.K453R 0.20 deleterious(0) probably_damaging(1) TCGA-CG-4306-01 9 139412379 139412379 G T NOTCH1 Silent p.P422P 0.25 TCGA-CG-4306-01 9 139699855 139699855 C T CCDC183 Silent p.G298G 0.22 TCGA-CG-4306-01 9 139741105 139741105 C T C9orf172 Missense_Mutation p.R747C 0.28 deleterious(0) probably_damaging(0.998) TCGA-CG-4306-01 9 139757759 139757759 G A EDF1 Missense_Mutation p.T91M 0.24 deleterious(0) probably_damaging(0.982) TCGA-CG-4306-01 9 139888076 139888076 C T C9orf142 Missense_Mutation p.R179W 0.17 tolerated(0.06) benign(0.187) TCGA-CG-4306-01 9 140033932 140033932 C T GRIN1 5'Flank 0.19 TCGA-CG-4306-01 9 140809195 140809195 G A CACNA1B Missense_Mutation p.A238T 0.26 deleterious(0.01) benign(0.218) TCGA-CG-4306-01 9 15479598 15479598 G A PSIP1 Nonsense_Mutation p.R182* 0.03 TCGA-CG-4306-01 9 17135271 17135271 G - CNTLN Frame_Shift_Del p.A72Qfs*18 0.33 TCGA-CG-4306-01 9 2110275 2110275 G A SMARCA2 Missense_Mutation p.R1105H 0.28 possibly_damaging(0.812) TCGA-CG-4306-01 9 21409548 21409548 C T IFNA8 Nonsense_Mutation p.Q125* 0.25 TCGA-CG-4306-01 9 2718008 2718008 G A KCNV2 Missense_Mutation p.S90N 0.18 tolerated(0.31) benign(0.001) TCGA-CG-4306-01 9 32542476 32542476 G A TOPORS Missense_Mutation p.R683W 0.27 deleterious_low_confidence(0) unknown(0) TCGA-CG-4306-01 9 33038834 33038834 A G DNAJA1 Missense_Mutation p.Y376C 0.07 tolerated(0.15) benign(0.01) TCGA-CG-4306-01 9 33246634 33246635 AG - SPINK4 Frame_Shift_Del p.E42Vfs*15 0.24 TCGA-CG-4306-01 9 33467247 33467247 C T NOL6 Missense_Mutation p.R580H 0.24 deleterious(0) probably_damaging(0.99) TCGA-CG-4306-01 9 34372899 34372899 G A KIAA1161 5'UTR 0.27 TCGA-CG-4306-01 9 34617918 34617918 T C DCTN3 Missense_Mutation p.I78V 0.28 tolerated(1) benign(0.003) TCGA-CG-4306-01 9 34996554 34996554 C - DNAJB5 Frame_Shift_Del p.P284Qfs*21 0.19 TCGA-CG-4306-01 9 35101920 35101920 C T STOML2 Missense_Mutation p.R108H 0.22 deleterious(0) probably_damaging(0.97) TCGA-CG-4306-01 9 35559222 35559222 G T RUSC2 Splice_Site p.X1114_splice 0.29 TCGA-CG-4306-01 9 35794060 35794060 G A NPR2 Missense_Mutation p.R278H 0.24 tolerated(0.15) benign(0.001) TCGA-CG-4306-01 9 37541398 37541398 C T FBXO10 Missense_Mutation p.S123N 0.22 tolerated(0.06) benign(0.255) TCGA-CG-4306-01 9 6482085 6482085 A T UHRF2 Nonsense_Mutation p.R460* 0.27 TCGA-CG-4306-01 9 73152135 73152135 C T TRPM3 Silent p.S1286S 0.28 TCGA-CG-4306-01 9 75369791 75369791 C T TMC1 Silent p.Y244Y 0.26 TCGA-CG-4306-01 9 78804619 78804620 - T PCSK5 Frame_Shift_Ins p.L862Ffs*19 0.25 TCGA-CG-4306-01 9 79792679 79792679 T C VPS13A Missense_Mutation p.V20A 0.15 tolerated(0.46) possibly_damaging(0.626) TCGA-CG-4306-01 9 84531943 84531943 C G SPATA31D5P RNA 0.21 TCGA-CG-4306-01 9 88236193 88236193 T - AGTPBP1 Frame_Shift_Del p.I635Lfs*8 0.31 TCGA-CG-4306-01 9 90343560 90343560 C T CTSL Missense_Mutation p.R153W 0.23 tolerated(0.14) benign(0.069) TCGA-CG-4306-01 9 91926143 91926143 C T CKS2 5'UTR 0.24 TCGA-CG-4306-01 9 91964707 91964707 C T SECISBP2 Silent p.D585D 0.19 TCGA-CG-4306-01 9 95012488 95012488 C T IARS Missense_Mutation p.R838Q 0.16 deleterious(0.02) probably_damaging(0.995) TCGA-CG-4306-01 9 95073456 95073456 T C NOL8 Missense_Mutation p.Q815R 0.19 deleterious(0.04) benign(0.266) TCGA-CG-4306-01 9 95236979 95236979 A - ASPN Frame_Shift_Del p.P68Hfs*24 0.28 TCGA-CG-4306-01 9 95796871 95796871 C T FGD3 Missense_Mutation p.R612W 0.25 deleterious(0.02) benign(0.002) TCGA-CG-4306-01 9 96214614 96214614 G A FAM120A Silent p.L139L 0.23 TCGA-CG-4306-01 9 96278286 96278286 G - FAM120A Frame_Shift_Del p.G386Afs*27 0.14 TCGA-CG-4306-01 9 99150564 99150564 C T ZNF367 Silent p.A336A 0.17 TCGA-CG-4306-01 X 101971337 101971337 T G GPRASP2 Missense_Mutation p.F514V 0.52 deleterious(0.01) probably_damaging(0.979) TCGA-CG-4306-01 X 107402789 107402789 G A COL4A6 Missense_Mutation p.A1573V 0.49 benign(0.18) TCGA-CG-4306-01 X 107979542 107979542 C T IRS4 Silent p.A11A 0.56 TCGA-CG-4306-01 X 110495724 110495724 C A CAPN6 Silent p.L170L 0.55 TCGA-CG-4306-01 X 125686397 125686397 G A DCAF12L1 Silent p.P65P 0.51 TCGA-CG-4306-01 X 127185702 127185702 C T ACTRT1 Missense_Mutation p.V162I 0.49 tolerated(0.13) possibly_damaging(0.739) TCGA-CG-4306-01 X 132887949 132887949 G A GPC3 Missense_Mutation p.L198F 0.10 deleterious(0) probably_damaging(0.999) TCGA-CG-4306-01 X 13787350 13787350 T - OFD1 3'UTR 0.38 TCGA-CG-4306-01 X 152482987 152482987 C T MAGEA1 Silent p.L8L 0.08 TCGA-CG-4306-01 X 152915111 152915111 G A DUSP9 Silent p.S266S 0.39 TCGA-CG-4306-01 X 153219639 153219639 C T HCFC1 Missense_Mutation p.G1404D 0.10 deleterious_low_confidence(0) benign(0.056) TCGA-CG-4306-01 X 15333660 15333660 A - ASB11 Frame_Shift_Del p.F23Sfs*5 0.43 TCGA-CG-4306-01 X 153596065 153596065 C T FLNA Missense_Mutation p.V222I 0.43 deleterious(0) possibly_damaging(0.728) TCGA-CG-4306-01 X 153693146 153693146 C T PLXNA3 Missense_Mutation p.R660C 0.44 deleterious(0.01) probably_damaging(0.97) TCGA-CG-4306-01 X 2407993 2407993 G A ZBED1 Silent p.I256I 0.35 TCGA-CG-4306-01 X 25033731 25033731 G A ARX Missense_Mutation p.R42W 0.42 deleterious(0) unknown(0) TCGA-CG-4306-01 X 39931787 39931787 T GG BCOR Frame_Shift_Ins p.T938Pfs*8 0.09 TCGA-CG-4306-01 X 44922797 44922798 TC - KDM6A Frame_Shift_Del p.Q555Afs*25 0.39 TCGA-CG-4306-01 X 48661558 48661558 A G HDAC6 Silent p.A82A 0.45 TCGA-CG-4306-01 X 49138500 49138500 C T PPP1R3F Missense_Mutation p.R373C 0.24 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CG-4306-01 X 55039970 55039970 G A ALAS2 Missense_Mutation p.R517C 0.47 deleterious(0) probably_damaging(0.999) TCGA-CG-4306-01 X 57146176 57146176 T C SPIN2B 3'UTR 0.40 TCGA-CG-4306-01 X 591692 591692 C T SHOX Silent p.N20N 0.26 TCGA-CG-4306-01 X 64139033 64139033 G - ZC4H2 Frame_Shift_Del p.I151Sfs*36 0.33 TCGA-CG-4306-01 X 70127618 70127618 A - TEX11 5'UTR 0.47 TCGA-CG-4306-01 X 72433105 72433106 - A NAP1L2 Frame_Shift_Ins p.S409Lfs*3 0.28 TCGA-CG-4306-01 X 73524621 73524621 C - ZCCHC13 3'UTR 0.46 TCGA-CG-4306-01 X 8503692 8503692 C T KAL1 Silent p.T594T 0.49 TCGA-CG-4306-01 X 99662749 99662749 C T PCDH19 Missense_Mutation p.D283N 0.47 tolerated(0.33) benign(0.072) TCGA-CG-4436-01 10 30318221 30318221 G A KIAA1462 Missense_Mutation p.R286W 0.08 deleterious(0.05) benign(0.287) TCGA-CG-4436-01 10 56423950 56423950 A C PCDH15 Missense_Mutation p.L25V 0.10 tolerated_low_confidence(0.15) benign(0.003) TCGA-CG-4436-01 11 100863358 100863358 G A TMEM133 Missense_Mutation p.V107I 0.30 tolerated_low_confidence(1) benign(0) TCGA-CG-4436-01 11 103908678 103908678 A C DDI1 Missense_Mutation p.Q376H 0.11 tolerated(0.18) benign(0.005) TCGA-CG-4436-01 11 10500162 10500162 C T AMPD3 Missense_Mutation p.P113L 0.11 tolerated(0.09) possibly_damaging(0.676) TCGA-CG-4436-01 11 125359440 125359440 G A FEZ1 Silent p.N78N 0.34 TCGA-CG-4436-01 11 132527068 132527068 A G OPCML Missense_Mutation p.V105A 0.12 deleterious(0) probably_damaging(0.968) TCGA-CG-4436-01 11 32954335 32954335 T G QSER1 Missense_Mutation p.S382A 0.18 deleterious(0.05) benign(0.253) TCGA-CG-4436-01 11 55135904 55135904 T G OR4A15 Missense_Mutation p.L182R 0.10 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-CG-4436-01 11 55322128 55322128 T C OR4C15 Silent p.L116L 0.07 TCGA-CG-4436-01 11 55322572 55322572 T C OR4C15 Missense_Mutation p.F264L 0.10 deleterious_low_confidence(0.01) benign(0.033) TCGA-CG-4436-01 11 55595575 55595575 A T OR5L2 Missense_Mutation p.N294I 0.07 deleterious(0) probably_damaging(0.999) TCGA-CG-4436-01 11 55681965 55681965 A G OR5W2 Silent p.L32L 0.15 TCGA-CG-4436-01 11 5730455 5730455 A C TRIM22 Missense_Mutation p.E358D 0.12 deleterious(0) probably_damaging(1) TCGA-CG-4436-01 11 66134027 66134027 C T SLC29A2 Missense_Mutation p.G248R 0.05 deleterious(0.02) benign(0.136) TCGA-CG-4436-01 11 7064388 7064388 T G NLRP14 Silent p.T377T 0.11 TCGA-CG-4436-01 11 72291953 72291953 T A PDE2A Missense_Mutation p.N704Y 0.07 deleterious(0) probably_damaging(0.998) TCGA-CG-4436-01 11 7950014 7950014 A C OR10A6 Missense_Mutation p.L66V 0.11 deleterious(0.01) probably_damaging(0.966) TCGA-CG-4436-01 11 92531044 92531044 T A FAT3 Missense_Mutation p.I1622N 0.12 probably_damaging(0.962) TCGA-CG-4436-01 12 109826622 109826622 C A MYO1H Silent p.R33R 0.06 TCGA-CG-4436-01 12 123019236 123019236 C T KNTC1 Missense_Mutation p.A52V 0.27 deleterious(0) probably_damaging(0.978) TCGA-CG-4436-01 12 130648113 130648113 C T FZD10 Missense_Mutation p.P209L 0.10 tolerated(1) probably_damaging(0.998) TCGA-CG-4436-01 12 14577210 14577210 C T ATF7IP Missense_Mutation p.P121S 0.07 tolerated_low_confidence(0.51) benign(0.254) TCGA-CG-4436-01 12 18865822 18865822 A C PLCZ1 Missense_Mutation p.L223R 0.10 deleterious(0) probably_damaging(0.987) TCGA-CG-4436-01 12 21733310 21733310 C T GYS2 Missense_Mutation p.R90K 0.09 tolerated(1) benign(0.001) TCGA-CG-4436-01 12 27148201 27148201 C A TM7SF3 Missense_Mutation p.S220I 0.41 tolerated(0.13) benign(0.013) TCGA-CG-4436-01 12 39268292 39268293 TG - CPNE8 Frame_Shift_Del p.T40Ifs*3 0.22 TCGA-CG-4436-01 12 50344953 50344953 G A AQP2 Missense_Mutation p.G114R 0.29 tolerated(0.09) probably_damaging(0.967) TCGA-CG-4436-01 12 51584026 51584026 A G POU6F1 3'UTR 0.20 TCGA-CG-4436-01 12 52910460 52910460 A G KRT5 Missense_Mutation p.I467T 0.11 deleterious(0) possibly_damaging(0.904) TCGA-CG-4436-01 13 101833582 101833582 A G NALCN Intron 0.04 TCGA-CG-4436-01 13 31232148 31232148 T C USPL1 Missense_Mutation p.I645T 0.14 tolerated(0.92) benign(0.007) TCGA-CG-4436-01 13 31232181 31232181 C - USPL1 Frame_Shift_Del p.Q657Kfs*3 0.14 TCGA-CG-4436-01 13 36006493 36006493 T G NBEA Silent p.T2089T 0.30 TCGA-CG-4436-01 13 43896631 43896631 G A ENOX1 Missense_Mutation p.R384W 0.12 deleterious(0) probably_damaging(0.999) TCGA-CG-4436-01 13 44455529 44455529 G T LACC1 Silent p.V136V 0.04 TCGA-CG-4436-01 13 52952648 52952648 G A THSD1 Missense_Mutation p.T486M 0.06 tolerated(0.26) benign(0.004) TCGA-CG-4436-01 13 58299057 58299057 A C PCDH17 Missense_Mutation p.S1037R 0.04 tolerated_low_confidence(0.21) benign(0.002) TCGA-CG-4436-01 13 84453960 84453960 C T SLITRK1 Silent p.P561P 0.47 TCGA-CG-4436-01 14 30068245 30068245 A G PRKD1 Silent p.D718D 0.15 TCGA-CG-4436-01 14 35554856 35554856 C T PPP2R3C Silent p.E434E 0.11 TCGA-CG-4436-01 14 42356892 42356892 T G LRFN5 Missense_Mutation p.F355C 0.05 deleterious(0) probably_damaging(0.997) TCGA-CG-4436-01 14 45716199 45716199 G A MIS18BP1 Silent p.P97P 0.08 TCGA-CG-4436-01 14 51368592 51368592 C G ABHD12B Missense_Mutation p.L276V 0.05 deleterious(0.04) possibly_damaging(0.771) TCGA-CG-4436-01 14 63735880 63735880 G A RHOJ Silent p.A77A 0.58 TCGA-CG-4436-01 14 70714387 70714387 G C ADAM21P1 RNA 0.10 TCGA-CG-4436-01 14 72138230 72138230 T C SIPA1L1 Missense_Mutation p.F884L 0.04 deleterious(0.03) benign(0.001) TCGA-CG-4436-01 15 30010566 30010566 C G TJP1 Missense_Mutation p.K1260N 0.10 deleterious_low_confidence(0) possibly_damaging(0.889) TCGA-CG-4436-01 15 30010567 30010567 T G TJP1 Missense_Mutation p.K1260T 0.10 deleterious_low_confidence(0) possibly_damaging(0.889) TCGA-CG-4436-01 15 40094423 40094423 T C GPR176 Missense_Mutation p.K153R 0.54 tolerated(0.12) probably_damaging(1) TCGA-CG-4436-01 15 48052517 48052517 G A SEMA6D Silent p.P42P 0.51 TCGA-CG-4436-01 15 50791187 50791187 G C USP8 Missense_Mutation p.E1087Q 0.09 deleterious(0) probably_damaging(0.984) TCGA-CG-4436-01 15 77407493 77407493 C G PEAK1 Missense_Mutation p.D1416H 0.09 deleterious(0.02) benign(0.33) TCGA-CG-4436-01 15 82336855 82336857 TCC - MEX3B In_Frame_Del p.E118del 0.29 TCGA-CG-4436-01 16 108437 108437 C T RHBDF1 Missense_Mutation p.V824I 0.39 tolerated(0.54) benign(0.004) TCGA-CG-4436-01 16 21008739 21008739 G A DNAH3 Missense_Mutation p.P2156L 0.09 deleterious(0) probably_damaging(0.986) TCGA-CG-4436-01 16 30980994 30980994 G C SETD1A Missense_Mutation p.E1000D 0.06 benign(0.217) TCGA-CG-4436-01 16 31104640 31104640 T A VKORC1 Silent p.L92L 0.39 TCGA-CG-4436-01 16 3639115 3639115 C T SLX4 Silent p.S1508S 0.09 TCGA-CG-4436-01 16 66919905 66919905 A G PDP2 3'UTR 0.56 TCGA-CG-4436-01 16 78064780 78064780 T G CLEC3A 3'UTR 0.10 TCGA-CG-4436-01 17 21101536 21101536 C T TMEM11 3'UTR 0.30 TCGA-CG-4436-01 17 27085478 27085478 C A FAM222B Missense_Mutation p.G500V 0.16 tolerated(0.25) possibly_damaging(0.807) TCGA-CG-4436-01 17 32646540 32646540 T G CCL8 Missense_Mutation p.L7R 0.15 deleterious(0) possibly_damaging(0.87) TCGA-CG-4436-01 17 36963083 36963083 T A CWC25 Silent p.A279A 0.08 TCGA-CG-4436-01 17 51901928 51901928 T A KIF2B Missense_Mutation p.S512T 0.06 deleterious(0.03) probably_damaging(0.944) TCGA-CG-4436-01 17 56699054 56699054 G A TEX14 Missense_Mutation p.R171W 0.07 deleterious(0.03) benign(0.1) TCGA-CG-4436-01 17 65040761 65040761 C T CACNG1 5'UTR 0.08 TCGA-CG-4436-01 17 7339728 7339728 G T TMEM102 Missense_Mutation p.V144F 0.11 deleterious(0.04) benign(0.059) TCGA-CG-4436-01 17 7535245 7535245 G C SHBG Missense_Mutation p.G255A 0.55 tolerated(0.42) benign(0.038) TCGA-CG-4436-01 17 7576897 7576897 G A TP53 Nonsense_Mutation p.Q317* 0.54 TCGA-CG-4436-01 17 76437168 76437168 G A DNAH17 Missense_Mutation p.P3867L 0.24 probably_damaging(0.962) TCGA-CG-4436-01 18 30672872 30672872 T A CCDC178 Missense_Mutation p.K747N 0.33 tolerated(0.15) possibly_damaging(0.471) TCGA-CG-4436-01 18 30846889 30846889 G T CCDC178 Missense_Mutation p.T467N 0.45 deleterious(0.01) benign(0.152) TCGA-CG-4436-01 19 15072963 15072963 G A SLC1A6 Silent p.S262S 0.11 TCGA-CG-4436-01 19 15839756 15839756 C T OR10H2 Silent p.A301A 0.09 TCGA-CG-4436-01 19 21607715 21607715 C T ZNF493 Missense_Mutation p.R752W 0.24 tolerated(0.26) possibly_damaging(0.904) TCGA-CG-4436-01 19 47234126 47234126 C T STRN4 Missense_Mutation p.A248T 0.08 tolerated(0.24) benign(0.07) TCGA-CG-4436-01 19 51132647 51132647 G A SYT3 Silent p.H395H 0.48 TCGA-CG-4436-01 19 51228685 51228685 C A CLEC11A Nonsense_Mutation p.C311* 0.26 TCGA-CG-4436-01 19 5265160 5265160 A G PTPRS Silent p.L143L 0.25 TCGA-CG-4436-01 19 5456567 5456567 G A ZNRF4 Silent p.V355V 0.18 TCGA-CG-4436-01 19 57286430 57286430 T G ZIM2 Silent p.R404R 0.12 TCGA-CG-4436-01 19 57967836 57967836 T G VN1R1 Missense_Mutation p.K7Q 0.09 deleterious_low_confidence(0) unknown(0) TCGA-CG-4436-01 19 58190001 58190001 G A ZSCAN4 Missense_Mutation p.E344K 0.24 tolerated(0.28) benign(0.014) TCGA-CG-4436-01 19 58601321 58601321 A C ZSCAN18 Missense_Mutation p.V161G 0.07 deleterious(0) probably_damaging(0.996) TCGA-CG-4436-01 19 7707378 7707378 C A STXBP2 Missense_Mutation p.D286E 0.13 tolerated(0.66) benign(0.004) TCGA-CG-4436-01 1 111663184 111663184 C G DRAM2 Missense_Mutation p.W157C 0.05 tolerated(0.2) benign(0.179) TCGA-CG-4436-01 1 12942129 12942129 G A PRAMEF4 Missense_Mutation p.P141S 0.10 tolerated(0.39) probably_damaging(0.979) TCGA-CG-4436-01 1 152284662 152284662 T C FLG Silent p.E900E 0.05 TCGA-CG-4436-01 1 152648577 152648577 C G LCE2C Missense_Mutation p.P29R 0.10 deleterious_low_confidence(0.05) unknown(0) TCGA-CG-4436-01 1 154155496 154155497 - T TPM3 Intron 0.08 TCGA-CG-4436-01 1 157739893 157739893 C T FCRL2 Missense_Mutation p.E120K 0.06 deleterious(0) probably_damaging(0.997) TCGA-CG-4436-01 1 161166028 161166028 C T ADAMTS4 Silent p.P341P 0.42 TCGA-CG-4436-01 1 176668713 176668713 A C PAPPA2 Missense_Mutation p.K1075T 0.09 tolerated(0.33) possibly_damaging(0.786) TCGA-CG-4436-01 1 193150565 193150565 A T B3GALT2 Missense_Mutation p.F43Y 0.11 tolerated_low_confidence(0.44) benign(0.005) TCGA-CG-4436-01 1 196250003 196250003 A G KCNT2 Missense_Mutation p.L966P 0.12 tolerated(0.07) probably_damaging(0.972) TCGA-CG-4436-01 1 200377112 200377112 A C ZNF281 Silent p.V574V 0.12 TCGA-CG-4436-01 1 207684998 207684998 C G CR1 Missense_Mutation p.D162E 0.11 tolerated(1) benign(0.001) TCGA-CG-4436-01 1 226475499 226475499 C T LIN9 Splice_Site p.X105_splice 0.11 TCGA-CG-4436-01 1 229568156 229568156 G A ACTA1 Silent p.D159D 0.08 TCGA-CG-4436-01 1 236902755 236902755 A G ACTN2 Missense_Mutation p.N344D 0.08 tolerated(0.62) possibly_damaging(0.535) TCGA-CG-4436-01 1 236910982 236910982 C T ACTN2 Silent p.H474H 0.08 TCGA-CG-4436-01 1 248020713 248020713 C T TRIM58 Silent p.Y55Y 0.23 TCGA-CG-4436-01 1 44684864 44684864 G A DMAP1 Missense_Mutation p.R286H 0.09 deleterious(0.04) probably_damaging(0.932) TCGA-CG-4436-01 1 74621486 74621486 A G LRRIQ3 Missense_Mutation p.L213P 0.16 deleterious(0) possibly_damaging(0.885) TCGA-CG-4436-01 1 7839807 7839807 T G VAMP3 3'UTR 0.41 TCGA-CG-4436-01 20 33868600 33868600 T C EIF6 Missense_Mutation p.T76A 0.06 tolerated(0.13) benign(0.015) TCGA-CG-4436-01 20 33935043 33935043 C T UQCC1 Missense_Mutation p.R166Q 0.05 deleterious(0.03) possibly_damaging(0.531) TCGA-CG-4436-01 20 34213988 34213988 G C CPNE1 3'UTR 0.27 TCGA-CG-4436-01 20 40790013 40790013 G T PTPRT Nonsense_Mutation p.Y887* 0.08 TCGA-CG-4436-01 20 44486607 44486607 G A ZSWIM3 Missense_Mutation p.R48H 0.11 deleterious(0.01) probably_damaging(0.997) TCGA-CG-4436-01 20 58450395 58450395 G C SYCP2 Missense_Mutation p.R1094G 0.09 tolerated(0.2) benign(0.007) TCGA-CG-4436-01 20 60847217 60847217 G A OSBPL2 Missense_Mutation p.E99K 0.05 deleterious(0) probably_damaging(0.999) TCGA-CG-4436-01 21 30433674 30433674 C T CCT8 Missense_Mutation p.R450H 0.09 deleterious(0) benign(0.212) TCGA-CG-4436-01 22 23264932 23264932 C T IGLC7 Silent p.T56T 0.11 TCGA-CG-4436-01 22 30951855 30951855 G A GAL3ST1 Silent p.T119T 0.10 TCGA-CG-4436-01 22 37688719 37688719 G A CYTH4 Missense_Mutation p.R26Q 0.11 deleterious(0.02) benign(0.042) TCGA-CG-4436-01 22 38474460 38474460 C T SLC16A8 Missense_Mutation p.A484T 0.47 tolerated(0.33) benign(0.024) TCGA-CG-4436-01 22 42276858 42276858 G A SREBF2 Missense_Mutation p.V634M 0.09 tolerated(0.22) probably_damaging(0.959) TCGA-CG-4436-01 22 44681488 44681488 C T KIAA1644 Missense_Mutation p.R140Q 0.27 deleterious(0.01) benign(0.107) TCGA-CG-4436-01 22 45564068 45564068 A G NUP50 Missense_Mutation p.R4G 0.08 deleterious(0) probably_damaging(0.993) TCGA-CG-4436-01 2 107450508 107450508 C T ST6GAL2 Silent p.S346S 0.06 TCGA-CG-4436-01 2 109429148 109429148 G A CCDC138 Missense_Mutation p.R306H 0.11 deleterious(0) possibly_damaging(0.715) TCGA-CG-4436-01 2 11318047 11318047 G A PQLC3 3'UTR 0.23 TCGA-CG-4436-01 2 113251822 113251826 GAATG - TTL Frame_Shift_Del p.G115Sfs*6 0.24 TCGA-CG-4436-01 2 133542769 133542769 T G NCKAP5 Missense_Mutation p.S539R 0.15 tolerated(0.13) benign(0.013) TCGA-CG-4436-01 2 144525825 144525825 T G ARHGAP15 3'UTR 0.40 TCGA-CG-4436-01 2 168103323 168103323 C G XIRP2 Missense_Mutation p.D1807E 0.35 benign(0.398) TCGA-CG-4436-01 2 168726566 168726566 T C B3GALT1 3'UTR 0.11 TCGA-CG-4436-01 2 171323173 171323173 G A MYO3B Missense_Mutation p.R989H 0.27 deleterious(0) probably_damaging(1) TCGA-CG-4436-01 2 179438783 179438783 C T TTN Missense_Mutation p.A24026T 0.30 TCGA-CG-4436-01 2 179495978 179495978 C G TTN Missense_Mutation p.E14599D 0.13 TCGA-CG-4436-01 2 212426722 212426722 A G ERBB4 Missense_Mutation p.L798P 0.07 deleterious(0) probably_damaging(0.999) TCGA-CG-4436-01 2 215818800 215818800 C T ABCA12 Missense_Mutation p.R2142H 0.09 tolerated(0.92) benign(0.004) TCGA-CG-4436-01 2 219000083 219000083 G A CXCR2 Missense_Mutation p.V187I 0.10 tolerated(1) benign(0.007) TCGA-CG-4436-01 2 233246019 233246019 C T ALPP Silent p.N417N 0.11 TCGA-CG-4436-01 2 242142897 242142897 C G ANO7 Silent p.L345L 0.17 TCGA-CG-4436-01 2 29137031 29137031 T C WDR43 Missense_Mutation p.Y235H 0.11 deleterious(0) probably_damaging(0.999) TCGA-CG-4436-01 2 32958967 32958967 G T TTC27 Missense_Mutation p.V436L 0.11 tolerated(0.18) benign(0.013) TCGA-CG-4436-01 2 33623444 33623444 C T LTBP1 Silent p.C1666C 0.34 TCGA-CG-4436-01 3 113187981 113187981 G A SPICE1 Missense_Mutation p.T239M 0.19 deleterious(0.02) benign(0.112) TCGA-CG-4436-01 3 121448164 121448164 G C GOLGB1 Missense_Mutation p.N91K 0.08 benign(0.287) TCGA-CG-4436-01 3 135870294 135870294 G A MSL2 Nonsense_Mutation p.R477* 0.24 TCGA-CG-4436-01 3 142756989 142756989 T G U2SURP Missense_Mutation p.F754C 0.29 tolerated(0.18) possibly_damaging(0.497) TCGA-CG-4436-01 3 150931143 150931143 T C P2RY14 Missense_Mutation p.D321G 0.12 tolerated(0.1) benign(0.054) TCGA-CG-4436-01 3 151156235 151156235 G A IGSF10 Silent p.A2038A 0.07 TCGA-CG-4436-01 3 172061989 172061989 G A FNDC3B Missense_Mutation p.G731S 0.21 tolerated(0.71) benign(0.007) TCGA-CG-4436-01 3 178984528 178984528 T A KCNMB3 5'UTR 0.12 TCGA-CG-4436-01 3 184008402 184008402 C T ECE2 Silent p.I689I 0.41 TCGA-CG-4436-01 3 185369933 185369933 G A IGF2BP2 Silent p.D470D 0.26 TCGA-CG-4436-01 3 70014029 70014029 T C MITF Missense_Mutation p.L398P 0.14 deleterious(0) probably_damaging(0.99) TCGA-CG-4436-01 3 78667086 78667086 T C ROBO1 Silent p.P1327P 0.08 TCGA-CG-4436-01 3 89259476 89259476 A C EPHA3 Missense_Mutation p.K207T 0.11 deleterious(0.05) benign(0.26) TCGA-CG-4436-01 3 89468391 89468391 T G EPHA3 Missense_Mutation p.L642R 0.17 deleterious(0.04) probably_damaging(0.999) TCGA-CG-4436-01 4 101396258 101396258 T A EMCN Missense_Mutation p.T66S 0.18 tolerated(1) possibly_damaging(0.874) TCGA-CG-4436-01 4 126240751 126240751 T G FAT4 Missense_Mutation p.L1062R 0.14 possibly_damaging(0.864) TCGA-CG-4436-01 4 126371122 126371122 T G FAT4 Missense_Mutation p.L2984R 0.10 benign(0.123) TCGA-CG-4436-01 4 128726846 128726846 C T HSPA4L Missense_Mutation p.A381V 0.13 deleterious(0) probably_damaging(0.983) TCGA-CG-4436-01 4 138452730 138452730 G C PCDH18 Silent p.L171L 0.15 TCGA-CG-4436-01 4 155508714 155508714 G T FGA Missense_Mutation p.L154I 0.07 tolerated(0.14) possibly_damaging(0.543) TCGA-CG-4436-01 4 162680664 162680664 A G FSTL5 Missense_Mutation p.L209P 0.09 deleterious(0.01) possibly_damaging(0.448) TCGA-CG-4436-01 4 183714348 183714348 T C TENM3 Missense_Mutation p.Y2175H 0.24 deleterious(0) possibly_damaging(0.86) TCGA-CG-4436-01 4 189068074 189068074 G A TRIML1 Missense_Mutation p.D319N 0.12 tolerated(0.19) benign(0.151) TCGA-CG-4436-01 4 66197825 66197825 T C EPHA5 Silent p.E958E 0.15 TCGA-CG-4436-01 4 66231771 66231771 T G EPHA5 Missense_Mutation p.K643N 0.09 tolerated(0.22) benign(0.395) TCGA-CG-4436-01 4 72620134 72620134 T G GC Missense_Mutation p.K438T 0.33 deleterious(0) probably_damaging(0.945) TCGA-CG-4436-01 4 8602891 8602891 G A CPZ Missense_Mutation p.A55T 0.18 tolerated(0.37) benign(0.021) TCGA-CG-4436-01 4 96761480 96761480 T G PDHA2 Missense_Mutation p.L60R 0.10 deleterious(0) probably_damaging(0.999) TCGA-CG-4436-01 5 128448775 128448775 T C ISOC1 3'UTR 0.13 TCGA-CG-4436-01 5 140572542 140572542 C G PCDHB10 Silent p.V139V 0.17 TCGA-CG-4436-01 5 140773068 140773068 G A PCDHGA8 Missense_Mutation p.V230M 0.47 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-CG-4436-01 5 161322857 161322857 A G GABRA1 Missense_Mutation p.S348G 0.08 tolerated(0.2) probably_damaging(0.973) TCGA-CG-4436-01 5 21854792 21854792 C T CDH12 Missense_Mutation p.D212N 0.10 deleterious(0) probably_damaging(0.984) TCGA-CG-4436-01 5 35033594 35033594 C T AGXT2 Missense_Mutation p.E216K 0.05 tolerated(0.49) benign(0.002) TCGA-CG-4436-01 5 35991412 35991412 C T UGT3A1 5'UTR 0.15 TCGA-CG-4436-01 5 45645499 45645499 T A HCN1 Missense_Mutation p.I213F 0.05 deleterious(0) probably_damaging(0.996) TCGA-CG-4436-01 6 101246604 101246604 G C ASCC3 Missense_Mutation p.I460M 0.08 deleterious(0) probably_damaging(0.91) TCGA-CG-4436-01 6 30955932 30955932 G A MUC21 Silent p.S554S 0.30 TCGA-CG-4436-01 6 32015679 32015679 C T TNXB 5'Flank 0.10 TCGA-CG-4436-01 6 32945673 32945673 C G BRD2 Missense_Mutation p.S490C 0.41 deleterious(0.01) probably_damaging(0.924) TCGA-CG-4436-01 6 35199583 35199583 G A SCUBE3 Missense_Mutation p.R139Q 0.10 tolerated(0.14) benign(0.266) TCGA-CG-4436-01 6 41309551 41309551 C A NCR2 Silent p.T138T 0.07 TCGA-CG-4436-01 6 72678732 72678732 A C RIMS1 Silent p.R71R 0.13 TCGA-CG-4436-01 6 73751677 73751677 G A KCNQ5 Missense_Mutation p.V170I 0.31 tolerated(0.13) probably_damaging(0.92) TCGA-CG-4436-01 6 74229182 74229182 C G EEF1A1 Missense_Mutation p.E68Q 0.23 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CG-4436-01 6 85470009 85470009 G C TBX18 Missense_Mutation p.A188G 0.12 deleterious(0) probably_damaging(0.994) TCGA-CG-4436-01 7 102760348 102760348 T G NAPEPLD Missense_Mutation p.E206A 0.06 tolerated(0.16) benign(0.009) TCGA-CG-4436-01 7 126882958 126882958 G A GRM8 Missense_Mutation p.R101C 0.04 deleterious(0) probably_damaging(0.998) TCGA-CG-4436-01 7 150923518 150923520 CTT - ABCF2 In_Frame_Del p.K9del 0.21 TCGA-CG-4436-01 7 151860470 151860470 G A KMT2C Missense_Mutation p.R3398W 0.07 probably_damaging(1) TCGA-CG-4436-01 7 157874063 157874063 G A PTPRN2 Silent p.L550L 0.08 TCGA-CG-4436-01 7 37907401 37907401 C A NME8 Missense_Mutation p.T240N 0.08 tolerated(0.51) benign(0.003) TCGA-CG-4436-01 7 51085176 51085176 A C COBL 3'UTR 0.08 TCGA-CG-4436-01 7 74251505 74251505 C A GTF2IRD2 Intron 0.29 TCGA-CG-4436-01 7 82585562 82585562 A C PCLO Silent p.A1569A 0.06 TCGA-CG-4436-01 7 82586037 82586037 T G PCLO Missense_Mutation p.K1411T 0.06 unknown(0) TCGA-CG-4436-01 7 94038701 94038701 T A COL1A2 Missense_Mutation p.L287H 0.06 unknown(0) TCGA-CG-4436-01 8 104898169 104898169 T G RIMS2 Missense_Mutation p.L448V 0.12 tolerated_low_confidence(0.12) benign(0.007) TCGA-CG-4436-01 8 110980483 110980483 C G KCNV1 Missense_Mutation p.R446T 0.20 deleterious(0.01) possibly_damaging(0.521) TCGA-CG-4436-01 8 134232923 134232923 C T WISP1 Missense_Mutation p.A150V 0.24 tolerated(0.06) benign(0.269) TCGA-CG-4436-01 8 139626133 139626133 G A COL22A1 Missense_Mutation p.P1319S 0.06 unknown(0) TCGA-CG-4436-01 8 142188188 142188188 C T DENND3 Missense_Mutation p.A830V 0.29 deleterious(0) probably_damaging(0.999) TCGA-CG-4436-01 8 42232307 42232307 T G DKK4 Silent p.P129P 0.05 TCGA-CG-4436-01 8 52322010 52322010 G A PXDNL Missense_Mutation p.A725V 0.21 tolerated(0.06) benign(0.001) TCGA-CG-4436-01 8 59059176 59059176 G A FAM110B Silent p.E129E 0.13 TCGA-CG-4436-01 9 111618016 111618016 G A ACTL7B Silent p.Y65Y 0.41 TCGA-CG-4436-01 9 113173353 113173353 C A SVEP1 Missense_Mutation p.G2213V 0.18 probably_damaging(0.956) TCGA-CG-4436-01 9 125437503 125437503 T G OR1L3 Missense_Mutation p.L32R 0.14 deleterious(0) probably_damaging(0.95) TCGA-CG-4436-01 9 133759379 133759379 G A ABL1 Missense_Mutation p.V587M 0.09 tolerated(0.08) possibly_damaging(0.76) TCGA-CG-4436-01 9 135470105 135470105 G C DDX31 3'UTR 0.10 TCGA-CG-4436-01 9 33068845 33068845 G A SMU1 Missense_Mutation p.R160C 0.38 deleterious(0.03) possibly_damaging(0.507) TCGA-CG-4436-01 9 43624889 43624889 T G SPATA31A6 Missense_Mutation p.Q1266H 0.05 tolerated(0.06) probably_damaging(0.982) TCGA-CG-4436-01 9 43627131 43627131 A T SPATA31A6 Missense_Mutation p.V519E 0.13 tolerated(0.07) possibly_damaging(0.59) TCGA-CG-4436-01 9 78601082 78601082 G A PCSK5 Missense_Mutation p.R111Q 0.42 deleterious(0) possibly_damaging(0.808) TCGA-CG-4436-01 9 87570233 87570233 G A NTRK2 Missense_Mutation p.G658D 0.20 tolerated(0.06) possibly_damaging(0.849) TCGA-CG-4436-01 X 23412382 23412382 G A PTCHD1 3'UTR 0.13 TCGA-CG-4436-01 X 32381009 32381009 A C DMD Missense_Mutation p.L1741V 0.11 possibly_damaging(0.567) TCGA-CG-4436-01 X 32430012 32430012 A C DMD Missense_Mutation p.L1364V 0.18 possibly_damaging(0.87) TCGA-CG-4436-01 X 36122739 36122739 A T CHDC2 Missense_Mutation p.I326F 0.16 deleterious(0.04) probably_damaging(0.973) TCGA-CG-4436-01 X 47104245 47104245 C T USP11 Missense_Mutation p.R713C 0.64 deleterious(0) probably_damaging(0.977) TCGA-CG-4436-01 X 48336427 48336427 G C FTSJ1 5'UTR 0.21 TCGA-CG-4436-01 X 55479467 55479467 A C MAGEH1 Nonstop_Mutation p.*220Yext*20 0.10 TCGA-CG-4436-01 X 73045157 73045157 G C XIST RNA 0.14 TCGA-CG-4436-01 X 83128879 83128879 A C CYLC1 Missense_Mutation p.K388T 0.35 deleterious(0.01) unknown(0) TCGA-CG-4436-01 X 8555953 8555953 T G KAL1 Missense_Mutation p.K203T 0.19 tolerated(0.32) possibly_damaging(0.892) TCGA-CG-4437-01 10 101565153 101565153 G A ABCC2 Silent p.K493K 0.30 TCGA-CG-4437-01 10 104459163 104459163 G C ARL3 Nonsense_Mutation p.Y77* 0.18 TCGA-CG-4437-01 10 105331527 105331527 G A NEURL1 Silent p.P199P 0.15 TCGA-CG-4437-01 10 107016591 107016591 T C SORCS3 Missense_Mutation p.S1118P 0.57 tolerated(0.2) benign(0.003) TCGA-CG-4437-01 10 12136219 12136219 A T DHTKD1 Missense_Mutation p.N436I 0.09 deleterious(0) probably_damaging(1) TCGA-CG-4437-01 10 129908757 129908757 C T MKI67 Silent p.P767P 0.10 TCGA-CG-4437-01 10 13523094 13523094 C T BEND7 Missense_Mutation p.V238M 0.11 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-CG-4437-01 10 18242163 18242163 T C SLC39A12 5'UTR 0.30 TCGA-CG-4437-01 10 23481531 23481531 C T PTF1A Silent p.D24D 0.25 TCGA-CG-4437-01 10 33481257 33481257 T C NRP1 Missense_Mutation p.K672E 0.28 tolerated(0.81) benign(0.019) TCGA-CG-4437-01 10 7205688 7205688 A G SFMBT2 3'UTR 0.25 TCGA-CG-4437-01 10 73544812 73544812 C A CDH23 Missense_Mutation p.N1894K 0.62 tolerated(0.11) benign(0.135) TCGA-CG-4437-01 10 73553038 73553038 T A CDH23 5'Flank 0.20 TCGA-CG-4437-01 10 74098034 74098034 G T DNAJB12 Silent p.I287I 0.48 TCGA-CG-4437-01 10 7618424 7618424 G A ITIH5 Missense_Mutation p.T657M 0.30 tolerated(0.12) benign(0.007) TCGA-CG-4437-01 10 94405294 94405294 G C KIF11 Missense_Mutation p.E814D 0.52 tolerated(0.34) benign(0.008) TCGA-CG-4437-01 10 97074812 97074812 C T SORBS1 3'UTR 0.22 TCGA-CG-4437-01 10 97423868 97423868 G C TCTN3 Missense_Mutation p.L594V 0.09 tolerated(0.08) benign(0.364) TCGA-CG-4437-01 11 102641481 102641481 A C MMP10 3'UTR 0.27 TCGA-CG-4437-01 11 103908451 103908451 C A DDI1 Missense_Mutation p.R301S 0.20 deleterious(0) probably_damaging(0.996) TCGA-CG-4437-01 11 10516557 10516557 T G AMPD3 Missense_Mutation p.Y425D 0.20 deleterious(0) probably_damaging(1) TCGA-CG-4437-01 11 10527536 10527536 G C AMPD3 3'UTR 0.29 TCGA-CG-4437-01 11 105836749 105836749 C T GRIA4 Intron 0.09 TCGA-CG-4437-01 11 108047806 108047806 G T NPAT Missense_Mutation p.H306Q 0.22 deleterious(0) probably_damaging(0.948) TCGA-CG-4437-01 11 11398919 11398919 G C GALNT18 Missense_Mutation p.P263A 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-CG-4437-01 11 114057740 114057740 C G ZBTB16 Missense_Mutation p.T478R 0.16 tolerated(0.14) benign(0.16) TCGA-CG-4437-01 11 114453606 114453606 T C NXPE4 Silent p.K78K 0.16 TCGA-CG-4437-01 11 119217082 119217082 G A MFRP Silent p.T19T 0.20 TCGA-CG-4437-01 11 122756539 122756540 - G C11orf63 5'UTR 0.23 TCGA-CG-4437-01 11 123753826 123753826 C A TMEM225 3'UTR 0.17 TCGA-CG-4437-01 11 123778075 123778075 C G OR8D4 Missense_Mutation p.P313A 0.12 tolerated_low_confidence(0.67) benign(0.005) TCGA-CG-4437-01 11 124012317 124012317 C T VWA5A Missense_Mutation p.A631V 0.13 tolerated(0.64) benign(0.004) TCGA-CG-4437-01 11 15994530 15994530 G T SOX6 Missense_Mutation p.P751H 0.12 deleterious(0) probably_damaging(1) TCGA-CG-4437-01 11 26708084 26708084 T C SLC5A12 Silent p.L387L 0.17 TCGA-CG-4437-01 11 34112103 34112103 A C CAPRIN1 Missense_Mutation p.T478P 0.12 tolerated(0.36) benign(0.015) TCGA-CG-4437-01 11 45204573 45204573 G A PRDM11 Missense_Mutation p.V129M 0.29 deleterious(0.01) probably_damaging(0.996) TCGA-CG-4437-01 11 47446159 47446159 T G PSMC3 Missense_Mutation p.Q130P 0.27 tolerated(0.42) possibly_damaging(0.707) TCGA-CG-4437-01 11 47712177 47712177 T C AGBL2 Missense_Mutation p.K361R 0.27 tolerated(0.47) benign(0.043) TCGA-CG-4437-01 11 55135745 55135745 T C OR4A15 Missense_Mutation p.L129P 0.27 deleterious_low_confidence(0) probably_damaging(0.945) TCGA-CG-4437-01 11 5529220 5529220 G C UBQLN3 Silent p.A523A 0.10 TCGA-CG-4437-01 11 55322517 55322517 T C OR4C15 Silent p.T245T 0.32 TCGA-CG-4437-01 11 56058115 56058115 C T OR8H1 Missense_Mutation p.A142T 0.25 tolerated(0.45) benign(0.009) TCGA-CG-4437-01 11 56143593 56143593 G A OR8U1 Missense_Mutation p.R165H 0.05 tolerated(0.37) benign(0.033) TCGA-CG-4437-01 11 5656043 5656043 C T TRIM34 Silent p.I234I 0.27 TCGA-CG-4437-01 11 57077309 57077309 C T TNKS1BP1 Missense_Mutation p.R959K 0.23 tolerated(0.58) benign(0) TCGA-CG-4437-01 11 57569651 57569662 TTACTGAAGTTA - CTNND1 In_Frame_Del p.E470_T473del 0.23 TCGA-CG-4437-01 11 5798936 5798956 CGTATCTGTTTTGTCTTTACT - OR52N5 In_Frame_Del p.V304_R310del 0.17 TCGA-CG-4437-01 11 58170549 58170549 G C OR5B3 Missense_Mutation p.L112V 0.19 deleterious_low_confidence(0) possibly_damaging(0.841) TCGA-CG-4437-01 11 63517497 63517497 G C RTN3 Missense_Mutation p.K855N 0.29 deleterious(0.02) probably_damaging(0.934) TCGA-CG-4437-01 11 64504226 64504226 G A RASGRP2 Missense_Mutation p.T365M 0.29 tolerated(0.07) benign(0.111) TCGA-CG-4437-01 11 64673264 64673264 C A ATG2A Silent p.T1107T 0.10 TCGA-CG-4437-01 11 64863943 64863943 T A VPS51 Missense_Mutation p.L74Q 0.17 deleterious(0) probably_damaging(0.974) TCGA-CG-4437-01 11 65617469 65617469 T C SNX32 Missense_Mutation p.Y74H 0.25 deleterious(0) possibly_damaging(0.845) TCGA-CG-4437-01 11 65620002 65620002 C T SNX32 Missense_Mutation p.R298C 0.13 deleterious(0.03) probably_damaging(0.91) TCGA-CG-4437-01 11 66444180 66444180 G A RBM4B Missense_Mutation p.A124V 0.27 deleterious(0) benign(0.426) TCGA-CG-4437-01 11 71724269 71724269 C T NUMA1 Missense_Mutation p.R1427Q 0.24 benign(0.128) TCGA-CG-4437-01 11 71727513 71727513 A G NUMA1 Missense_Mutation p.S395P 0.15 benign(0.002) TCGA-CG-4437-01 11 72006684 72006684 C T CLPB Silent p.L476L 0.15 TCGA-CG-4437-01 11 72295356 72295356 C T PDE2A Silent p.E513E 0.21 TCGA-CG-4437-01 11 74545757 74545757 T C RNF169 Silent p.C293C 0.31 TCGA-CG-4437-01 11 74876911 74876911 C A SLCO2B1 Missense_Mutation p.A122D 0.25 deleterious(0) probably_damaging(0.996) TCGA-CG-4437-01 11 77412830 77412830 T G RSF1 Missense_Mutation p.T482P 0.32 tolerated_low_confidence(0.27) benign(0.05) TCGA-CG-4437-01 11 77784130 77784130 A C NDUFC2 Missense_Mutation p.V75G 0.23 tolerated(0.48) possibly_damaging(0.499) TCGA-CG-4437-01 11 7982669 7982669 G A NLRP10 Silent p.L164L 0.13 TCGA-CG-4437-01 11 85593584 85593592 GGCACATAC - CCDC83 In_Frame_Del p.I72_H74del 0.20 TCGA-CG-4437-01 11 93469351 93469351 A G TAF1D Silent p.T271T 0.14 TCGA-CG-4437-01 11 93469380 93469380 T A TAF1D Nonsense_Mutation p.K262* 0.11 TCGA-CG-4437-01 11 94277451 94277451 C G FUT4 Missense_Mutation p.A51G 0.25 deleterious_low_confidence(0.01) benign(0.048) TCGA-CG-4437-01 12 110905945 110905945 C T GPN3 Intron 0.27 TCGA-CG-4437-01 12 112621028 112621028 A T HECTD4 Missense_Mutation p.F3462I 0.16 probably_damaging(0.948) TCGA-CG-4437-01 12 11286388 11286388 A C TAS2R30 Silent p.T152T 0.11 TCGA-CG-4437-01 12 117993048 117993048 G A KSR2 Missense_Mutation p.P482S 0.30 deleterious(0.02) probably_damaging(0.992) TCGA-CG-4437-01 12 118480940 118480940 G C WSB2 Missense_Mutation p.T142R 0.05 deleterious(0) possibly_damaging(0.77) TCGA-CG-4437-01 12 120128120 120128120 G C CIT Missense_Mutation p.L2008V 0.34 deleterious_low_confidence(0.04) benign(0.118) TCGA-CG-4437-01 12 121088444 121088465 GGCAACTGTGTCAAGTATCCAC - CABP1 Intron 0.20 TCGA-CG-4437-01 12 121622455 121622455 G A P2RX7 Silent p.R546R 0.40 TCGA-CG-4437-01 12 122958648 122958648 G T ZCCHC8 Missense_Mutation p.S507Y 0.28 deleterious(0.02) possibly_damaging(0.526) TCGA-CG-4437-01 12 123311062 123311062 G C CCDC62 3'UTR 0.23 TCGA-CG-4437-01 12 124352050 124352050 T C DNAH10 Missense_Mutation p.Y2284H 0.18 probably_damaging(0.987) TCGA-CG-4437-01 12 129558601 129558601 G C TMEM132D Nonsense_Mutation p.S1040* 0.24 TCGA-CG-4437-01 12 130892274 130892274 G A RIMBP2 Silent p.V974V 0.19 TCGA-CG-4437-01 12 131286027 131286027 C G STX2 Missense_Mutation p.R157T 0.22 deleterious(0) benign(0.191) TCGA-CG-4437-01 12 132394492 132394492 C T ULK1 Missense_Mutation p.R252W 0.30 deleterious(0) probably_damaging(0.997) TCGA-CG-4437-01 12 132681779 132681779 C G GALNT9 Missense_Mutation p.R196P 0.11 deleterious(0) probably_damaging(0.985) TCGA-CG-4437-01 12 18544106 18544106 G C PIK3C2G Missense_Mutation p.E641D 0.35 tolerated(0.15) benign(0.02) TCGA-CG-4437-01 12 2800085 2800085 T G CACNA1C Missense_Mutation p.L2094R 0.36 deleterious_low_confidence(0) probably_damaging(1) TCGA-CG-4437-01 12 33560234 33560234 A - SYT10 Frame_Shift_Del p.F189Lfs*21 0.10 TCGA-CG-4437-01 12 41365318 41365318 G A CNTN1 Intron 0.23 TCGA-CG-4437-01 12 4554416 4554416 G A FGF6 Silent p.S107S 0.25 TCGA-CG-4437-01 12 48961715 48961715 C A LALBA 3'UTR 0.26 TCGA-CG-4437-01 12 49949443 49949443 C A KCNH3 Missense_Mutation p.S726Y 0.24 tolerated(0.06) benign(0.133) TCGA-CG-4437-01 12 52681408 52681408 G A KRT81 Missense_Mutation p.T333M 0.22 tolerated(0.06) benign(0.305) TCGA-CG-4437-01 12 53207397 53207397 G A KRT4 Missense_Mutation p.A149V 0.21 deleterious(0.01) possibly_damaging(0.599) TCGA-CG-4437-01 12 53343417 53343417 C G KRT18 Intron 0.38 TCGA-CG-4437-01 12 53567221 53567221 C T CSAD Missense_Mutation p.G39R 0.23 tolerated(0.05) benign(0.133) TCGA-CG-4437-01 12 54743432 54743432 C A COPZ1 Missense_Mutation p.T159N 0.26 tolerated(0.06) benign(0.046) TCGA-CG-4437-01 12 55356846 55356846 G T TESPA1 Missense_Mutation p.P279H 0.35 deleterious(0) probably_damaging(1) TCGA-CG-4437-01 12 56811411 56811411 G T TIMELESS 3'UTR 0.24 TCGA-CG-4437-01 12 57036523 57036523 G A ATP5B Silent p.D295D 0.23 TCGA-CG-4437-01 12 59270290 59270296 TTCCACT - LRIG3 Frame_Shift_Del p.S876Afs*54 0.22 TCGA-CG-4437-01 12 659023 659023 T C B4GALNT3 Silent p.D314D 0.13 TCGA-CG-4437-01 12 70949667 70949667 G T PTPRB Missense_Mutation p.T1659N 0.31 deleterious(0) probably_damaging(0.983) TCGA-CG-4437-01 12 70974915 70974915 T A PTPRB Missense_Mutation p.S827C 0.24 tolerated(0.19) probably_damaging(0.919) TCGA-CG-4437-01 12 80771646 80771646 G T OTOGL Missense_Mutation p.D2285Y 0.09 deleterious(0) probably_damaging(0.958) TCGA-CG-4437-01 12 8083958 8083958 G A SLC2A3 Silent p.C131C 0.20 TCGA-CG-4437-01 12 82147870 82147870 C T PPFIA2 Missense_Mutation p.R44H 0.18 deleterious(0) probably_damaging(0.947) TCGA-CG-4437-01 12 8610506 8610506 G T CLEC6A Missense_Mutation p.W15L 0.20 tolerated(0.07) benign(0.115) TCGA-CG-4437-01 13 100181797 100181816 AAAAGTTAGAATTCTTGAAA - TM9SF2 Frame_Shift_Del p.L139Hfs*13 0.16 TCGA-CG-4437-01 13 110434390 110434390 T - IRS2 Frame_Shift_Del p.E1338Sfs*19 0.12 TCGA-CG-4437-01 13 110815821 110815821 G T COL4A1 Missense_Mutation p.A1413D 0.44 benign(0.149) TCGA-CG-4437-01 13 25281425 25281425 A G ATP12A Missense_Mutation p.I789V 0.16 tolerated(0.05) probably_damaging(0.991) TCGA-CG-4437-01 13 25671743 25671743 A G PABPC3 Silent p.R469R 0.11 TCGA-CG-4437-01 13 30109978 30109978 G A SLC7A1 Silent p.N116N 0.22 TCGA-CG-4437-01 13 38237650 38237650 C A TRPC4 Missense_Mutation p.A531S 0.29 tolerated(0.11) possibly_damaging(0.831) TCGA-CG-4437-01 13 41383755 41383755 C G SLC25A15 Silent p.A286A 0.16 TCGA-CG-4437-01 13 41766424 41766437 CCTGACTCAGAGTC - KBTBD7 Frame_Shift_Del p.D653Kfs*8 0.13 TCGA-CG-4437-01 13 45533532 45533532 C G NUFIP1 Missense_Mutation p.L335F 0.05 deleterious(0) probably_damaging(0.998) TCGA-CG-4437-01 13 46930568 46930568 A C KIAA0226L Silent p.P443P 0.06 TCGA-CG-4437-01 13 52972273 52972273 T A THSD1 Missense_Mutation p.N39Y 0.06 deleterious(0) possibly_damaging(0.896) TCGA-CG-4437-01 13 53298169 53298169 A C LECT1 Missense_Mutation p.V144G 0.25 deleterious(0) probably_damaging(0.984) TCGA-CG-4437-01 13 61987872 61987872 G A PCDH20 Silent p.S120S 0.24 TCGA-CG-4437-01 13 70681469 70681469 G A KLHL1 Silent p.Y121Y 0.29 TCGA-CG-4437-01 13 86369359 86369359 C T SLITRK6 Missense_Mutation p.G429S 0.14 tolerated(0.35) benign(0.01) TCGA-CG-4437-01 13 88330082 88330082 G C SLITRK5 Silent p.L813L 0.16 TCGA-CG-4437-01 14 107218934 107218934 A G IGHV3-74 Silent p.V31V 0.18 TCGA-CG-4437-01 14 107218937 107218937 T C IGHV3-74 Silent p.L30L 0.18 TCGA-CG-4437-01 14 21829373 21829373 C T SUPT16H Splice_Site p.X598_splice 0.28 TCGA-CG-4437-01 14 22447161 22447161 G A TRAV8-6 Missense_Mutation p.V48I 0.16 tolerated(0.2) benign(0.021) TCGA-CG-4437-01 14 23311122 23311132 GGCCATGAGGC - MMP14 Frame_Shift_Del p.A87Pfs*12 0.18 TCGA-CG-4437-01 14 23531679 23531679 G T ACIN1 Silent p.T1037T 0.18 TCGA-CG-4437-01 14 24842993 24842993 G A NFATC4 Missense_Mutation p.R614Q 0.13 deleterious(0) probably_damaging(0.995) TCGA-CG-4437-01 14 29237640 29237640 C T FOXG1 Silent p.A385A 0.32 TCGA-CG-4437-01 14 35036958 35036958 T C SNX6 Silent p.T379T 0.15 TCGA-CG-4437-01 14 56757161 56757161 A C PELI2 Missense_Mutation p.Q228P 0.25 deleterious(0.04) possibly_damaging(0.552) TCGA-CG-4437-01 14 61449344 61449344 T G SLC38A6 Missense_Mutation p.V75G 0.09 deleterious(0) possibly_damaging(0.848) TCGA-CG-4437-01 14 64554530 64554531 - A SYNE2 Frame_Shift_Ins p.I3878Nfs*13 0.22 TCGA-CG-4437-01 14 64699872 64699872 T A ESR2 Missense_Mutation p.N526Y 0.26 tolerated(0.06) benign(0.212) TCGA-CG-4437-01 14 68159758 68159758 G T RDH11 Missense_Mutation p.S29Y 0.23 deleterious(0) benign(0.157) TCGA-CG-4437-01 14 71063376 71063376 G A MED6 Missense_Mutation p.P76S 0.14 deleterious(0) probably_damaging(1) TCGA-CG-4437-01 14 73422256 73422256 G A DCAF4 Missense_Mutation p.R344H 0.24 deleterious(0) probably_damaging(0.953) TCGA-CG-4437-01 14 74823592 74823592 C G VRTN Missense_Mutation p.Q36E 0.28 deleterious(0.02) benign(0.002) TCGA-CG-4437-01 14 75409395 75409395 C T PGF 3'UTR 0.21 TCGA-CG-4437-01 14 94756223 94756223 G C SERPINA10 Missense_Mutation p.I236M 0.16 tolerated(0.06) possibly_damaging(0.557) TCGA-CG-4437-01 15 22472967 22472967 G A IGHV4OR15-8 Silent p.L102L 0.06 TCGA-CG-4437-01 15 25490525 25490525 G T SNORD115-40 3'Flank 0.19 TCGA-CG-4437-01 15 25966922 25966922 C T ATP10A Silent p.T415T 0.33 TCGA-CG-4437-01 15 28600014 28600014 C A RP11-483E23.2 Splice_Site 0.05 TCGA-CG-4437-01 15 31362292 31362292 G A TRPM1 Missense_Mutation p.P91L 0.31 deleterious(0.02) probably_damaging(0.964) TCGA-CG-4437-01 15 34080419 34080419 T C RYR3 Missense_Mutation p.V3197A 0.14 probably_damaging(0.997) TCGA-CG-4437-01 15 34080420 34080420 G A RYR3 Silent p.V3197V 0.14 TCGA-CG-4437-01 15 40657356 40657356 C T DISP2 Missense_Mutation p.S243F 0.14 deleterious(0.05) benign(0.002) TCGA-CG-4437-01 15 40914168 40914168 G C CASC5 Missense_Mutation p.G595A 0.06 tolerated(0.08) possibly_damaging(0.834) TCGA-CG-4437-01 15 42138151 42138151 C T PLA2G4B Silent p.S733S 0.22 TCGA-CG-4437-01 15 51687079 51687079 G C GLDN Missense_Mutation p.D197H 0.20 deleterious(0) probably_damaging(0.991) TCGA-CG-4437-01 15 57808977 57808977 G C CGNL1 Splice_Site p.X802_splice 0.15 TCGA-CG-4437-01 15 57815798 57815798 C T CGNL1 Missense_Mutation p.R943W 0.26 deleterious(0) probably_damaging(0.995) TCGA-CG-4437-01 15 63571457 63571457 C G APH1B Missense_Mutation p.L71V 0.23 tolerated(0.1) benign(0.116) TCGA-CG-4437-01 15 64686249 64686249 C A TRIP4 Missense_Mutation p.T69N 0.16 tolerated(0.5) benign(0.001) TCGA-CG-4437-01 15 65113607 65113607 C G PIF1 Missense_Mutation p.M310I 0.07 deleterious(0) probably_damaging(0.996) TCGA-CG-4437-01 15 67768148 67768148 G A IQCH Missense_Mutation p.D931N 0.37 tolerated(0.14) benign(0.117) TCGA-CG-4437-01 15 71174850 71174850 C A THAP10 Missense_Mutation p.K239N 0.44 deleterious_low_confidence(0.01) possibly_damaging(0.766) TCGA-CG-4437-01 15 75648717 75648717 G C MAN2C1 Silent p.P954P 0.27 TCGA-CG-4437-01 15 76225485 76225485 C T FBXO22 3'UTR 0.17 TCGA-CG-4437-01 15 79382975 79382975 A G RASGRF1 5'UTR 0.38 TCGA-CG-4437-01 15 81235367 81235367 C T KIAA1199 Missense_Mutation p.H1261Y 0.10 tolerated(0.21) benign(0.001) TCGA-CG-4437-01 15 83437669 83437669 T A FSD2 Missense_Mutation p.T506S 0.16 tolerated(0.86) benign(0.002) TCGA-CG-4437-01 15 85200517 85200517 G A NMB Missense_Mutation p.H74Y 0.64 deleterious(0.02) possibly_damaging(0.804) TCGA-CG-4437-01 15 86311917 86311917 C T KLHL25 Silent p.L375L 0.08 TCGA-CG-4437-01 15 91424224 91424224 A G FURIN Silent p.P582P 0.04 TCGA-CG-4437-01 15 93007443 93007443 C T ST8SIA2 Missense_Mutation p.P319L 0.48 benign(0.313) TCGA-CG-4437-01 16 1637198 1637198 C A IFT140 Splice_Site p.X337_splice 0.20 TCGA-CG-4437-01 16 20693649 20693649 G A ACSM1 Silent p.P180P 0.23 TCGA-CG-4437-01 16 2231826 2231826 C T CASKIN1 Nonsense_Mutation p.W578* 0.40 TCGA-CG-4437-01 16 25238439 25238439 C T AQP8 Missense_Mutation p.A218V 0.08 deleterious(0) probably_damaging(0.999) TCGA-CG-4437-01 16 28488892 28488892 G C CLN3 Missense_Mutation p.S421C 0.28 deleterious(0) probably_damaging(0.997) TCGA-CG-4437-01 16 30311210 30311210 T C RP11-347C12.2 RNA 0.20 TCGA-CG-4437-01 16 30783174 30783174 G C RNF40 Silent p.L869L 0.17 TCGA-CG-4437-01 16 31475984 31475984 C G ARMC5 Missense_Mutation p.A547G 0.10 deleterious(0) possibly_damaging(0.826) TCGA-CG-4437-01 16 3191066 3191066 G A ZNF213 Silent p.V366V 0.20 TCGA-CG-4437-01 16 3282916 3282916 G A ZNF200 Missense_Mutation p.P86S 0.12 tolerated_low_confidence(0.12) benign(0.005) TCGA-CG-4437-01 16 4862095 4862095 A G GLYR1 Missense_Mutation p.F425S 0.37 deleterious(0) possibly_damaging(0.857) TCGA-CG-4437-01 16 50100171 50100171 G C HEATR3 Silent p.L43L 0.33 TCGA-CG-4437-01 16 51174348 51174348 G A SALL1 Silent p.S595S 0.19 TCGA-CG-4437-01 16 53190912 53190912 A C CHD9 Missense_Mutation p.D304A 0.28 possibly_damaging(0.676) TCGA-CG-4437-01 16 56903669 56903669 G A SLC12A3 Silent p.S178S 0.31 TCGA-CG-4437-01 16 66958847 66958847 G A RRAD Missense_Mutation p.S79L 0.31 deleterious(0) benign(0.446) TCGA-CG-4437-01 16 67219060 67219060 G A EXOC3L1 Silent p.R576R 0.12 TCGA-CG-4437-01 16 67290884 67290884 G C SLC9A5 Silent p.V401V 0.26 TCGA-CG-4437-01 16 67681832 67681832 G C RLTPR Missense_Mutation p.G348R 0.13 deleterious(0) probably_damaging(0.92) TCGA-CG-4437-01 16 70575719 70575719 T C SF3B3 Silent p.S405S 0.23 TCGA-CG-4437-01 16 727688 727688 C A RHBDL1 Missense_Mutation p.A345D 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-CG-4437-01 16 72992656 72992656 C T ZFHX3 Silent p.A463A 0.15 TCGA-CG-4437-01 16 7568333 7568333 C T RBFOX1 Missense_Mutation p.T91M 0.20 deleterious(0.04) benign(0.427) TCGA-CG-4437-01 16 77323228 77323228 C G ADAMTS18 Silent p.L1161L 0.13 TCGA-CG-4437-01 16 87866582 87866582 C G SLC7A5 Missense_Mutation p.E506D 0.26 tolerated(0.11) benign(0.41) TCGA-CG-4437-01 16 9858092 9858092 G T GRIN2A Silent p.R1103R 0.20 TCGA-CG-4437-01 17 10227552 10227552 T C MYH13 Silent p.E907E 0.25 TCGA-CG-4437-01 17 10355590 10355590 C A MYH4 Missense_Mutation p.A1136S 0.13 tolerated(0.1) possibly_damaging(0.842) TCGA-CG-4437-01 17 10435038 10435038 G T MYH2 Missense_Mutation p.A870D 0.13 tolerated(0.11) benign(0.003) TCGA-CG-4437-01 17 15535953 15535953 G T RP11-385D13.1 Silent p.T295T 0.08 TCGA-CG-4437-01 17 1565203 1565203 A C PRPF8 Missense_Mutation p.L1340R 0.10 deleterious(0.02) benign(0.35) TCGA-CG-4437-01 17 16040687 16040687 T A NCOR1 Nonsense_Mutation p.K483* 0.27 TCGA-CG-4437-01 17 16040688 16040688 C A NCOR1 Missense_Mutation p.K482N 0.28 possibly_damaging(0.862) TCGA-CG-4437-01 17 18284812 18284812 G A EVPLL Silent p.P65P 0.11 TCGA-CG-4437-01 17 26817363 26817363 A T SLC13A2 Silent p.P90P 0.27 TCGA-CG-4437-01 17 27893668 27893668 A C ABHD15 Missense_Mutation p.L106R 0.22 tolerated(0.07) possibly_damaging(0.859) TCGA-CG-4437-01 17 28783287 28783287 G A CPD Silent p.E1117E 0.27 TCGA-CG-4437-01 17 29161318 29161318 T G ATAD5 Missense_Mutation p.N73K 0.11 tolerated(0.14) benign(0.004) TCGA-CG-4437-01 17 293071 293071 C T FAM101B Missense_Mutation p.V107I 0.45 tolerated(0.41) benign(0.025) TCGA-CG-4437-01 17 31266499 31266499 G T TMEM98 Missense_Mutation p.D140Y 0.22 deleterious(0) unknown(0) TCGA-CG-4437-01 17 33328293 33328293 G T LIG3 Missense_Mutation p.E783D 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-CG-4437-01 17 33348714 33348714 T C RFFL Silent p.Q89Q 0.29 TCGA-CG-4437-01 17 34935804 34935804 G A GGNBP2 Silent p.Q325Q 0.26 TCGA-CG-4437-01 17 36717698 36717698 C G SRCIN1 Splice_Site p.X567_splice 0.24 TCGA-CG-4437-01 17 37899172 37899172 G A GRB7 Missense_Mutation p.D133N 0.28 deleterious(0.01) benign(0.026) TCGA-CG-4437-01 17 38173213 38173213 G A CSF3 3'UTR 0.32 TCGA-CG-4437-01 17 38938687 38938687 G C KRT27 Missense_Mutation p.S20C 0.50 deleterious(0) possibly_damaging(0.896) TCGA-CG-4437-01 17 39019999 39019999 C T KRT12 Missense_Mutation p.A309T 0.26 deleterious(0.01) possibly_damaging(0.804) TCGA-CG-4437-01 17 39254069 39254069 A T KRTAP4-8 Missense_Mutation p.C90S 0.19 tolerated(0.06) unknown(0) TCGA-CG-4437-01 17 39578678 39578678 C A KRT37 Missense_Mutation p.K247N 0.34 tolerated(1) benign(0.004) TCGA-CG-4437-01 17 39596900 39596900 A G KRT38 Missense_Mutation p.C92R 0.30 deleterious(0.02) probably_damaging(0.94) TCGA-CG-4437-01 17 39643923 39643923 C G KRT36 Missense_Mutation p.V256L 0.11 deleterious(0.02) probably_damaging(0.994) TCGA-CG-4437-01 17 40321495 40321495 C T KCNH4 Silent p.E530E 0.23 TCGA-CG-4437-01 17 40639384 40639384 C A ATP6V0A1 Missense_Mutation p.T348K 0.09 deleterious(0.03) probably_damaging(1) TCGA-CG-4437-01 17 40839832 40839832 G A CNTNAP1 Missense_Mutation p.R380H 0.26 tolerated(0.16) possibly_damaging(0.904) TCGA-CG-4437-01 17 40840604 40840604 G C CNTNAP1 Silent p.R477R 0.26 TCGA-CG-4437-01 17 41584565 41584565 G A DHX8 Silent p.E641E 0.34 TCGA-CG-4437-01 17 42030279 42030279 G T PYY 3'UTR 0.17 TCGA-CG-4437-01 17 4648177 4648177 G C ZMYND15 Missense_Mutation p.G625A 0.11 deleterious(0) probably_damaging(1) TCGA-CG-4437-01 17 55062741 55062741 C T SCPEP1 Silent p.G76G 0.08 TCGA-CG-4437-01 17 56581218 56581218 C T MTMR4 Nonsense_Mutation p.W566* 0.09 TCGA-CG-4437-01 17 56676672 56676672 A G TEX14 Silent p.D684D 0.08 TCGA-CG-4437-01 17 57684433 57684433 G C DHX40 Missense_Mutation p.R747T 0.20 deleterious_low_confidence(0) possibly_damaging(0.782) TCGA-CG-4437-01 17 58258984 58258984 T C USP32 Missense_Mutation p.K1417E 0.06 deleterious_low_confidence(0.01) benign(0.122) TCGA-CG-4437-01 17 60129928 60129928 T C MED13 Missense_Mutation p.Y147C 0.09 deleterious(0.03) probably_damaging(1) TCGA-CG-4437-01 17 61897523 61897523 C G FTSJ3 Missense_Mutation p.R756T 0.25 deleterious(0) benign(0.038) TCGA-CG-4437-01 17 61958081 61958081 C G GH2 Missense_Mutation p.R169S 0.23 deleterious_low_confidence(0) benign(0.003) TCGA-CG-4437-01 17 61988323 61988323 C A CSHL1 Intron 0.30 TCGA-CG-4437-01 17 62020205 62020205 G C SCN4A Silent p.V1423V 0.12 TCGA-CG-4437-01 17 62125323 62125323 C G ERN1 Missense_Mutation p.L808F 0.25 deleterious(0) probably_damaging(0.999) TCGA-CG-4437-01 17 62893266 62893266 G C LRRC37A3 Missense_Mutation p.A37G 0.09 deleterious(0.02) benign(0.054) TCGA-CG-4437-01 17 65548449 65548449 T C PITPNC1 Missense_Mutation p.Y92H 0.37 deleterious(0.04) benign(0.331) TCGA-CG-4437-01 17 65989053 65989053 T A C17orf58 Intron 0.20 TCGA-CG-4437-01 17 67519748 67519748 A G MAP2K6 Missense_Mutation p.K210R 0.12 tolerated(0.11) probably_damaging(0.992) TCGA-CG-4437-01 17 7187687 7187687 C T SLC2A4 Missense_Mutation p.P239L 0.11 tolerated(0.06) benign(0.002) TCGA-CG-4437-01 17 7317669 7317669 G A NLGN2 Missense_Mutation p.R172H 0.33 tolerated(0.13) probably_damaging(0.982) TCGA-CG-4437-01 17 73921502 73921502 C T FBF1 Silent p.E284E 0.50 TCGA-CG-4437-01 17 75212586 75212586 C G SEC14L1 Intron 0.14 TCGA-CG-4437-01 17 7604143 7604143 T G WRAP53 Missense_Mutation p.S243A 0.09 tolerated(0.05) benign(0.021) TCGA-CG-4437-01 17 76503864 76503864 G A DNAH17 Silent p.T1416T 0.41 TCGA-CG-4437-01 17 76557965 76557965 A C DNAH17 Missense_Mutation p.L556R 0.14 probably_damaging(0.997) TCGA-CG-4437-01 17 7705023 7705023 G T DNAH2 Nonsense_Mutation p.E2943* 0.12 TCGA-CG-4437-01 17 79894654 79894654 A C PYCR1 Missense_Mutation p.F13V 0.35 tolerated(0.49) benign(0.028) TCGA-CG-4437-01 18 12546865 12546865 C A SPIRE1 Silent p.L137L 0.23 TCGA-CG-4437-01 18 21134742 21134742 C T NPC1 Silent p.T511T 0.26 TCGA-CG-4437-01 18 21736146 21736146 T C CABYR Intron 0.25 TCGA-CG-4437-01 18 25583075 25583075 C T CDH2 Silent p.G302G 0.14 TCGA-CG-4437-01 18 2674039 2674039 C G SMCHD1 Missense_Mutation p.P178R 0.27 deleterious(0.02) probably_damaging(1) TCGA-CG-4437-01 18 34192035 34192035 G A FHOD3 Missense_Mutation p.V312M 0.14 tolerated(0.06) benign(0.313) TCGA-CG-4437-01 18 5489161 5489161 C A EPB41L3 Missense_Mutation p.D8Y 0.16 deleterious(0) probably_damaging(0.968) TCGA-CG-4437-01 18 67871435 67871435 G C RTTN Missense_Mutation p.S95C 0.11 deleterious(0.05) possibly_damaging(0.605) TCGA-CG-4437-01 19 13397751 13397751 G A CACNA1A Missense_Mutation p.S1040L 0.25 benign(0.003) TCGA-CG-4437-01 19 15302590 15302590 G A NOTCH3 Silent p.N256N 0.22 TCGA-CG-4437-01 19 17952465 17952465 G C JAK3 Missense_Mutation p.T323R 0.12 tolerated(0.07) benign(0.017) TCGA-CG-4437-01 19 18971148 18971148 G C UPF1 Missense_Mutation p.G734A 0.24 tolerated(0.24) benign(0.002) TCGA-CG-4437-01 19 2433911 2433911 G A LMNB2 Silent p.A465A 0.15 TCGA-CG-4437-01 19 34842423 34842423 C G KIAA0355 Missense_Mutation p.H944D 0.12 deleterious_low_confidence(0.01) probably_damaging(0.923) TCGA-CG-4437-01 19 3525967 3525967 G C FZR1 Missense_Mutation p.W57C 0.24 deleterious(0) possibly_damaging(0.882) TCGA-CG-4437-01 19 36210764 36210764 C - KMT2B Frame_Shift_Del p.P174Qfs*20 0.28 TCGA-CG-4437-01 19 38912651 38912651 A T RASGRP4 Missense_Mutation p.C56S 0.10 deleterious(0.05) benign(0.433) TCGA-CG-4437-01 19 39068820 39068820 G C RYR1 Missense_Mutation p.K4780N 0.24 unknown(0) TCGA-CG-4437-01 19 41726605 41726605 C T AXL Silent p.L50L 0.41 TCGA-CG-4437-01 19 42085888 42085888 C A CEACAM21 Missense_Mutation p.P203T 0.17 tolerated(0.66) benign(0.374) TCGA-CG-4437-01 19 43674209 43674209 G C PSG5 Intron 0.12 TCGA-CG-4437-01 19 44378005 44378005 G A ZNF404 Missense_Mutation p.H121Y 0.25 tolerated(0.13) benign(0.001) TCGA-CG-4437-01 19 4446345 4446345 C T UBXN6 Missense_Mutation p.R329Q 0.50 deleterious(0) probably_damaging(0.982) TCGA-CG-4437-01 19 46543422 46543422 C G IGFL4 Missense_Mutation p.C108S 0.07 deleterious(0) probably_damaging(0.978) TCGA-CG-4437-01 19 46664038 46664038 C A IGFL2 Missense_Mutation p.L92I 0.12 tolerated(0.29) possibly_damaging(0.478) TCGA-CG-4437-01 19 46893354 46893354 G A PPP5C Missense_Mutation p.D468N 0.21 tolerated(0.17) benign(0.007) TCGA-CG-4437-01 19 47712611 47712611 T G SAE1 3'UTR 0.27 TCGA-CG-4437-01 19 4818286 4818286 G C TICAM1 Missense_Mutation p.P35R 0.15 tolerated(0.16) benign(0.312) TCGA-CG-4437-01 19 49477581 49477581 C G GYS1 Missense_Mutation p.E480Q 0.33 deleterious(0.01) probably_damaging(0.996) TCGA-CG-4437-01 19 50883102 50883102 C T NR1H2 Silent p.D331D 0.12 TCGA-CG-4437-01 19 51770751 51770751 G A SIGLECL1 Missense_Mutation p.V179I 0.27 tolerated(0.57) benign(0) TCGA-CG-4437-01 19 5244018 5244018 C A PTPRS Silent p.V488V 0.41 TCGA-CG-4437-01 19 53885517 53885517 A G ZNF525 3'UTR 0.13 TCGA-CG-4437-01 19 56736480 56736480 T C ZSCAN5A Intron 0.07 TCGA-CG-4437-01 19 57286491 57286491 A C ZIM2 Silent p.T383T 0.25 TCGA-CG-4437-01 19 6535071 6535071 G A TNFSF9 Silent p.S253S 0.17 TCGA-CG-4437-01 19 7987364 7987364 T G SNAPC2 Silent p.L240L 0.31 TCGA-CG-4437-01 19 8661972 8661972 G C ADAMTS10 Missense_Mutation p.S313R 0.23 deleterious(0) probably_damaging(0.988) TCGA-CG-4437-01 19 9959825 9959825 G C PIN1 Missense_Mutation p.G148R 0.33 tolerated(0.1) possibly_damaging(0.692) TCGA-CG-4437-01 1 10321979 10321979 T G KIF1B Missense_Mutation p.F127C 0.43 deleterious(0) probably_damaging(0.999) TCGA-CG-4437-01 1 109270518 109270518 G C FNDC7 Silent p.L400L 0.14 TCGA-CG-4437-01 1 110714700 110714700 A T SLC6A17 Missense_Mutation p.Y102F 0.21 tolerated(0.3) benign(0.17) TCGA-CG-4437-01 1 112998804 112998804 G T CTTNBP2NL Missense_Mutation p.Q230H 0.15 deleterious(0.02) benign(0.025) TCGA-CG-4437-01 1 113212788 113212788 G A CAPZA1 3'UTR 0.25 TCGA-CG-4437-01 1 116947121 116947121 C G ATP1A1 3'UTR 0.15 TCGA-CG-4437-01 1 120497838 120497838 C G NOTCH2 Missense_Mutation p.D682H 0.10 deleterious(0.01) probably_damaging(0.991) TCGA-CG-4437-01 1 12855915 12855915 C T PRAMEF1 Missense_Mutation p.R399C 0.07 tolerated(0.22) benign(0) TCGA-CG-4437-01 1 145530340 145530340 G C ITGA10 Missense_Mutation p.Q185H 0.30 deleterious(0) possibly_damaging(0.89) TCGA-CG-4437-01 1 147231318 147231318 A C GJA5 Missense_Mutation p.F10C 0.24 deleterious(0) probably_damaging(0.984) TCGA-CG-4437-01 1 151314865 151314874 GCTGGGAACC - RFX5 Frame_Shift_Del p.G547Ifs*16 0.10 TCGA-CG-4437-01 1 152856909 152856909 A T SMCP Missense_Mutation p.Q4L 0.06 deleterious_low_confidence(0.04) benign(0.145) TCGA-CG-4437-01 1 154947317 154947317 A T CKS1B Intron 0.22 TCGA-CG-4437-01 1 154956093 154956093 G A FLAD1 5'UTR 0.26 TCGA-CG-4437-01 1 155005612 155005612 G C DCST2 Missense_Mutation p.Q133E 0.20 deleterious(0) probably_damaging(0.982) TCGA-CG-4437-01 1 156339103 156339103 C T RHBG Silent p.F21F 0.22 TCGA-CG-4437-01 1 15793956 15793956 T G CELA2A Missense_Mutation p.S239A 0.37 deleterious(0) probably_damaging(0.909) TCGA-CG-4437-01 1 158577100 158577100 G T OR10Z1 Missense_Mutation p.S291I 0.11 deleterious(0) benign(0.154) TCGA-CG-4437-01 1 160104959 160104959 C T ATP1A2 Silent p.H663H 0.19 TCGA-CG-4437-01 1 161953891 161953891 G C OLFML2B Silent p.A609A 0.13 TCGA-CG-4437-01 1 178489991 178489991 T A TEX35 Missense_Mutation p.H175Q 0.30 deleterious_low_confidence(0.02) probably_damaging(0.944) TCGA-CG-4437-01 1 180166594 180166594 A C QSOX1 3'UTR 0.40 TCGA-CG-4437-01 1 182026102 182026102 C T ZNF648 Silent p.S348S 0.19 TCGA-CG-4437-01 1 185894223 185894223 C G HMCN1 Missense_Mutation p.L444V 0.09 probably_damaging(0.931) TCGA-CG-4437-01 1 186056779 186056779 T A HMCN1 Splice_Site p.X3121_splice 0.06 TCGA-CG-4437-01 1 19062421 19062421 C A PAX7 Missense_Mutation p.T484N 0.16 tolerated_low_confidence(0.15) benign(0) TCGA-CG-4437-01 1 19653095 19653095 G T PQLC2 Missense_Mutation p.R199L 0.20 deleterious(0) probably_damaging(1) TCGA-CG-4437-01 1 197073768 197073768 C T ASPM Missense_Mutation p.R1538Q 0.13 tolerated(0.08) possibly_damaging(0.838) TCGA-CG-4437-01 1 200559309 200559309 G T KIF14 Missense_Mutation p.L969I 0.43 deleterious(0) probably_damaging(0.988) TCGA-CG-4437-01 1 201342443 201342443 C T TNNT2 5'UTR 0.10 TCGA-CG-4437-01 1 20249202 20249202 C G PLA2G2E Missense_Mutation p.E29D 0.30 tolerated(0.08) possibly_damaging(0.848) TCGA-CG-4437-01 1 202843373 202843373 G C RABIF 3'Flank 0.62 TCGA-CG-4437-01 1 203144770 203144770 G A MYBPH Silent p.S38S 0.09 TCGA-CG-4437-01 1 204943805 204943805 G A NFASC Missense_Mutation p.S471N 0.12 tolerated(0.15) benign(0.274) TCGA-CG-4437-01 1 205210856 205210856 G A TMCC2 Missense_Mutation p.R144Q 0.16 tolerated_low_confidence(0.17) benign(0.126) TCGA-CG-4437-01 1 206647762 206647762 T C IKBKE Missense_Mutation p.L59P 0.11 deleterious(0) probably_damaging(1) TCGA-CG-4437-01 1 207850787 207850787 G A CR1L Missense_Mutation p.D51N 0.25 tolerated(0.28) benign(0.065) TCGA-CG-4437-01 1 209799127 209799127 C G LAMB3 Silent p.G614G 0.52 TCGA-CG-4437-01 1 215844540 215844540 G T USH2A Missense_Mutation p.P4636H 0.10 possibly_damaging(0.77) TCGA-CG-4437-01 1 220091794 220091794 A T SLC30A10 Missense_Mutation p.V254D 0.40 deleterious(0) benign(0.314) TCGA-CG-4437-01 1 220091904 220091904 G T SLC30A10 Intron 0.44 TCGA-CG-4437-01 1 224922345 224922345 G T CNIH3 Missense_Mutation p.C131F 0.26 deleterious(0.01) probably_damaging(1) TCGA-CG-4437-01 1 226175773 226175773 G C SDE2 Missense_Mutation p.Q320E 0.40 tolerated(0.89) benign(0.014) TCGA-CG-4437-01 1 22927279 22927279 C T EPHA8 Silent p.P838P 0.25 TCGA-CG-4437-01 1 230379172 230379172 A C GALNT2 Missense_Mutation p.E243A 0.15 deleterious(0) possibly_damaging(0.854) TCGA-CG-4437-01 1 235324635 235324655 CGGCAGTCGGCCGCCGGGCGG - RBM34 5'UTR 0.38 TCGA-CG-4437-01 1 23763691 23763691 G C ASAP3 Missense_Mutation p.T425R 0.26 deleterious(0.04) benign(0.017) TCGA-CG-4437-01 1 244582180 244582180 A T ADSS Missense_Mutation p.V276D 0.24 deleterious(0) probably_damaging(0.998) TCGA-CG-4437-01 1 244849945 244849945 A C DESI2 Missense_Mutation p.H30P 0.31 deleterious(0) probably_damaging(1) TCGA-CG-4437-01 1 24663062 24663062 A G GRHL3 Silent p.G119G 0.14 TCGA-CG-4437-01 1 247978674 247978674 G A OR14A16 Missense_Mutation p.R120C 0.36 deleterious(0.01) benign(0.273) TCGA-CG-4437-01 1 26888123 26888123 G A RPS6KA1 Missense_Mutation p.G529D 0.24 deleterious(0.02) possibly_damaging(0.664) TCGA-CG-4437-01 1 34554768 34554768 C T CSMD2 Missense_Mutation p.G32S 0.26 tolerated(0.11) benign(0.2) TCGA-CG-4437-01 1 36564121 36564121 T A COL8A2 Silent p.P387P 0.31 TCGA-CG-4437-01 1 36932035 36932035 C A CSF3R Missense_Mutation p.V839F 0.24 deleterious(0.01) possibly_damaging(0.673) TCGA-CG-4437-01 1 36938253 36938253 G A CSF3R Silent p.D236D 0.25 TCGA-CG-4437-01 1 36938254 36938254 T C CSF3R Missense_Mutation p.D236G 0.25 tolerated(0.08) benign(0.003) TCGA-CG-4437-01 1 38227298 38227298 T G EPHA10 Missense_Mutation p.Q210P 0.26 deleterious(0) probably_damaging(0.951) TCGA-CG-4437-01 1 38227300 38227300 C G EPHA10 Missense_Mutation p.K209N 0.27 deleterious(0) probably_damaging(0.983) TCGA-CG-4437-01 1 39749100 39749100 A C MACF1 Silent p.P281P 0.13 TCGA-CG-4437-01 1 44446826 44446826 C G B4GALT2 Silent p.A27A 0.20 TCGA-CG-4437-01 1 45120509 45120509 C G TMEM53 Missense_Mutation p.V186L 0.14 tolerated(0.1) benign(0.023) TCGA-CG-4437-01 1 46976756 46976756 G T DMBX1 Missense_Mutation p.Q161H 0.08 tolerated(0.11) possibly_damaging(0.785) TCGA-CG-4437-01 1 57258129 57258129 T C C1orf168 Silent p.Q119Q 0.10 TCGA-CG-4437-01 1 57411524 57411524 C T C8B Missense_Mutation p.V359I 0.42 tolerated(1) benign(0.007) TCGA-CG-4437-01 1 5965732 5965732 G A NPHP4 Missense_Mutation p.P575S 0.18 deleterious(0) probably_damaging(0.999) TCGA-CG-4437-01 1 64515551 64515551 A G ROR1 Missense_Mutation p.I118V 0.16 deleterious(0) benign(0.116) TCGA-CG-4437-01 1 66102502 66102502 C T LEPR Missense_Mutation p.S1101L 0.15 tolerated(1) benign(0) TCGA-CG-4437-01 1 70904487 70904487 T C CTH Missense_Mutation p.L390P 0.40 deleterious(0) probably_damaging(0.996) TCGA-CG-4437-01 1 79107661 79107661 G T IFI44L 3'UTR 0.29 TCGA-CG-4437-01 1 85648626 85648626 G A SYDE2 Nonsense_Mutation p.R567* 0.45 TCGA-CG-4437-01 1 86591326 86591326 A C COL24A1 Silent p.S231S 0.34 TCGA-CG-4437-01 1 94643575 94643601 ACTCTACCAAGCGTGCTTGATTTGAAT - ARHGAP29 In_Frame_Del p.Y868_E876del 0.30 TCGA-CG-4437-01 20 17462751 17462751 C G PCSK2 3'UTR 0.22 TCGA-CG-4437-01 20 21224925 21224925 T A PLK1S1 RNA 0.16 TCGA-CG-4437-01 20 2641184 2641184 T G IDH3B Missense_Mutation p.Q195P 0.10 deleterious(0.02) possibly_damaging(0.765) TCGA-CG-4437-01 20 30816106 30816106 G A POFUT1 Missense_Mutation p.A195T 0.13 deleterious(0) probably_damaging(1) TCGA-CG-4437-01 20 31652354 31652354 C T BPIFB3 Silent p.N248N 0.08 TCGA-CG-4437-01 20 32346586 32346586 C T ZNF341 Silent p.N327N 0.21 TCGA-CG-4437-01 20 40044125 40044125 C T CHD6 Missense_Mutation p.E2214K 0.26 deleterious(0.02) possibly_damaging(0.593) TCGA-CG-4437-01 20 43837255 43837255 A T SEMG1 Silent p.I439I 0.10 TCGA-CG-4437-01 20 50408838 50408838 T C SALL4 Missense_Mutation p.T62A 0.13 tolerated(0.83) benign(0) TCGA-CG-4437-01 20 5958554 5958554 T A MCM8 Nonsense_Mutation p.Y476* 0.08 TCGA-CG-4437-01 20 6022174 6022174 G A LRRN4 Missense_Mutation p.L573F 0.13 deleterious(0.03) benign(0.263) TCGA-CG-4437-01 20 62378595 62378595 G A ZBTB46 Silent p.A486A 0.62 TCGA-CG-4437-01 20 62737475 62737475 C T NPBWR2 Missense_Mutation p.R237H 0.31 tolerated(0.54) possibly_damaging(0.845) TCGA-CG-4437-01 21 11097572 11097572 C A BAGE2 RNA 0.06 TCGA-CG-4437-01 21 27394255 27394255 C T APP Missense_Mutation p.E256K 0.17 deleterious(0.02) unknown(0) TCGA-CG-4437-01 21 30968834 30968834 C G GRIK1-AS2 3'UTR 0.19 TCGA-CG-4437-01 21 31015175 31015175 C T GRIK1 Missense_Mutation p.G357R 0.25 deleterious(0) probably_damaging(0.997) TCGA-CG-4437-01 21 31691743 31691743 C T KRTAP26-1 Missense_Mutation p.R204H 0.19 tolerated(0.44) benign(0.049) TCGA-CG-4437-01 21 31709495 31709495 C T KRTAP27-1 Silent p.Q164Q 0.24 TCGA-CG-4437-01 21 34962174 34962174 G A CRYZL1 Missense_Mutation p.A335V 0.26 tolerated(1) benign(0) TCGA-CG-4437-01 21 38639585 38639585 G A DSCR3 Missense_Mutation p.A4V 0.11 tolerated(0.64) benign(0.001) TCGA-CG-4437-01 21 45680690 45680690 G A DNMT3L Nonsense_Mutation p.R47* 0.35 TCGA-CG-4437-01 22 17451031 17451031 T C GAB4 Missense_Mutation p.T247A 0.30 deleterious(0.02) possibly_damaging(0.636) TCGA-CG-4437-01 22 19028772 19028772 A T DGCR2 Missense_Mutation p.F399I 0.10 tolerated(0.05) possibly_damaging(0.815) TCGA-CG-4437-01 22 19442339 19442339 T C UFD1L Missense_Mutation p.Y261C 0.12 deleterious(0.01) probably_damaging(0.971) TCGA-CG-4437-01 22 26887495 26887495 A T SRRD Missense_Mutation p.T293S 0.13 deleterious(0.03) probably_damaging(0.948) TCGA-CG-4437-01 22 30977396 30977396 C G PES1 Splice_Site p.X250_splice 0.15 TCGA-CG-4437-01 22 31531724 31531724 C A PLA2G3 Missense_Mutation p.K505N 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.599) TCGA-CG-4437-01 22 32058137 32058137 G A PISD Missense_Mutation p.R20W 0.18 deleterious_low_confidence(0.05) benign(0.215) TCGA-CG-4437-01 22 32352156 32352156 G A YWHAH Missense_Mutation p.E40K 0.11 deleterious_low_confidence(0) possibly_damaging(0.65) TCGA-CG-4437-01 22 32630885 32630885 G T SLC5A4 Missense_Mutation p.A287D 0.20 deleterious(0) probably_damaging(0.911) TCGA-CG-4437-01 22 36122594 36122594 C G APOL5 Missense_Mutation p.P160R 0.27 deleterious(0.01) possibly_damaging(0.596) TCGA-CG-4437-01 22 36661728 36661728 C T APOL1 Silent p.D298D 0.14 TCGA-CG-4437-01 22 37458585 37458585 C G KCTD17 Missense_Mutation p.P282R 0.23 tolerated_low_confidence(0.1) benign(0.002) TCGA-CG-4437-01 22 42473397 42473397 C A FAM109B Missense_Mutation p.P34T 0.14 tolerated(0.43) benign(0.405) TCGA-CG-4437-01 22 43924769 43924769 G C EFCAB6 Missense_Mutation p.I1490M 0.33 deleterious(0.02) probably_damaging(0.965) TCGA-CG-4437-01 22 50616220 50616220 C T PANX2 Missense_Mutation p.S360L 0.19 deleterious(0) probably_damaging(0.997) TCGA-CG-4437-01 2 103281631 103281631 G A SLC9A2 Missense_Mutation p.A276T 0.10 deleterious(0.02) benign(0.026) TCGA-CG-4437-01 2 105472909 105472909 A T POU3F3 Missense_Mutation p.E314V 0.24 deleterious(0) probably_damaging(0.988) TCGA-CG-4437-01 2 109365361 109365376 AAATTTTTTTTTCAGG TA RANBP2 Splice_Site p.X355_splice 0.12 TCGA-CG-4437-01 2 119735455 119735455 T A MARCO Missense_Mutation p.I237N 0.26 deleterious(0.03) possibly_damaging(0.665) TCGA-CG-4437-01 2 120439105 120439105 G T TMEM177 Missense_Mutation p.A226S 0.25 tolerated(0.42) benign(0.025) TCGA-CG-4437-01 2 121736059 121736059 G A GLI2 Missense_Mutation p.R473H 0.29 tolerated(0.28) probably_damaging(0.983) TCGA-CG-4437-01 2 121747917 121747917 C G GLI2 Missense_Mutation p.P1476R 0.05 tolerated(0.09) benign(0.157) TCGA-CG-4437-01 2 128351207 128351207 A T MYO7B Missense_Mutation p.K744N 0.27 deleterious(0) probably_damaging(1) TCGA-CG-4437-01 2 130918787 130918787 G C SMPD4 Missense_Mutation p.P347R 0.14 deleterious(0) benign(0.064) TCGA-CG-4437-01 2 137814637 137814637 G A THSD7B Missense_Mutation p.G263R 0.28 tolerated(0.19) probably_damaging(0.999) TCGA-CG-4437-01 2 153526775 153526775 G T PRPF40A Missense_Mutation p.P534T 0.07 tolerated(0.07) possibly_damaging(0.876) TCGA-CG-4437-01 2 162873627 162873627 T G DPP4 Missense_Mutation p.N487H 0.10 tolerated(0.06) benign(0.446) TCGA-CG-4437-01 2 165550830 165550831 AG T COBLL1 Frame_Shift_Del p.T1062Nfs*4 0.13 TCGA-CG-4437-01 2 166012305 166012305 C T SCN3A Missense_Mutation p.M380I 0.09 deleterious(0) possibly_damaging(0.679) TCGA-CG-4437-01 2 166848165 166848165 G A SCN1A Missense_Mutation p.R1874W 0.26 deleterious(0) probably_damaging(1) TCGA-CG-4437-01 2 166903448 166903449 AA - SCN1A Frame_Shift_Del p.F403Cfs*46 0.21 TCGA-CG-4437-01 2 170366566 170366566 C G KLHL41 Missense_Mutation p.S93C 0.34 deleterious(0) probably_damaging(0.986) TCGA-CG-4437-01 2 170863659 170863659 A T UBR3 Nonsense_Mutation p.K1397* 0.18 TCGA-CG-4437-01 2 172398199 172398199 T A CYBRD1 Missense_Mutation p.S100T 0.14 deleterious(0) possibly_damaging(0.626) TCGA-CG-4437-01 2 179414985 179414985 T C TTN Missense_Mutation p.E30527G 0.18 TCGA-CG-4437-01 2 179569607 179569607 T A TTN Silent p.T9897T 0.35 TCGA-CG-4437-01 2 179594203 179594203 G A TTN Missense_Mutation p.P6227L 0.17 TCGA-CG-4437-01 2 182850902 182850902 C T PPP1R1C Missense_Mutation p.P22L 0.09 deleterious(0) probably_damaging(0.999) TCGA-CG-4437-01 2 183623585 183623585 G A DNAJC10 Silent p.R655R 0.20 TCGA-CG-4437-01 2 188332507 188332507 G C TFPI Missense_Mutation p.Q261E 0.07 tolerated(0.28) benign(0.002) TCGA-CG-4437-01 2 196750979 196750979 G T DNAH7 Silent p.S1808S 0.36 TCGA-CG-4437-01 2 207820236 207820236 C A CPO Missense_Mutation p.T72K 0.19 deleterious(0) possibly_damaging(0.714) TCGA-CG-4437-01 2 21228333 21228333 G A APOB Missense_Mutation p.P3803S 0.26 benign(0.033) TCGA-CG-4437-01 2 215279274 215279274 C T VWC2L Silent p.H119H 0.23 TCGA-CG-4437-01 2 215821416 215821416 G A ABCA12 Silent p.G2068G 0.17 TCGA-CG-4437-01 2 215839501 215839501 C A ABCA12 Splice_Site p.X1823_splice 0.21 TCGA-CG-4437-01 2 216243985 216243985 G A FN1 Silent p.S1830S 0.26 TCGA-CG-4437-01 2 216995702 216995704 TCT - XRCC5 In_Frame_Del p.S349del 0.18 TCGA-CG-4437-01 2 220357372 220357372 T A SPEG Missense_Mutation p.L3223Q 0.17 probably_damaging(0.999) TCGA-CG-4437-01 2 223168875 223168875 T A CCDC140 Missense_Mutation p.L85Q 0.33 deleterious_low_confidence(0.02) possibly_damaging(0.883) TCGA-CG-4437-01 2 228563524 228563524 A G SLC19A3 Missense_Mutation p.W303R 0.18 deleterious(0) probably_damaging(0.999) TCGA-CG-4437-01 2 228788658 228788658 G T DAW1 Missense_Mutation p.D408Y 0.12 deleterious(0) probably_damaging(0.999) TCGA-CG-4437-01 2 230231600 230231600 G A DNER Silent p.I697I 0.20 TCGA-CG-4437-01 2 232135733 232135733 G C ARMC9 Silent p.V386V 0.26 TCGA-CG-4437-01 2 233527521 233527521 T C EFHD1 Silent p.A104A 0.16 TCGA-CG-4437-01 2 242157201 242157201 C A ANO7 Silent p.R745R 0.23 TCGA-CG-4437-01 2 26536310 26536310 C T GPR113 Missense_Mutation p.V470I 0.18 tolerated(0.47) benign(0.026) TCGA-CG-4437-01 2 37041500 37041500 A C VIT Missense_Mutation p.N693T 0.27 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-CG-4437-01 2 49210097 49210097 C T FSHR Missense_Mutation p.E208K 0.10 tolerated(1) benign(0.001) TCGA-CG-4437-01 2 55461288 55461288 C T RPS27A Missense_Mutation p.A46V 0.33 deleterious(0.02) probably_damaging(0.964) TCGA-CG-4437-01 2 55615954 55615954 T C CCDC88A Missense_Mutation p.N78S 0.28 deleterious(0) probably_damaging(0.989) TCGA-CG-4437-01 2 68384612 68384612 C G WDR92 5'UTR 0.29 TCGA-CG-4437-01 2 72740258 72740258 T C EXOC6B Intron 0.30 TCGA-CG-4437-01 2 74141874 74141874 G C ACTG2 Missense_Mutation p.E227D 0.21 deleterious_low_confidence(0.03) probably_damaging(0.996) TCGA-CG-4437-01 2 74702165 74702165 G A CCDC142 Missense_Mutation p.S618F 0.29 deleterious(0) possibly_damaging(0.561) TCGA-CG-4437-01 2 74757811 74757811 C A HTRA2 Missense_Mutation p.L192I 0.18 deleterious(0.01) probably_damaging(0.997) TCGA-CG-4437-01 2 80101243 80101243 C A CTNNA2 Silent p.A209A 0.09 TCGA-CG-4437-01 2 96040133 96040133 A G KCNIP3 Missense_Mutation p.K91E 0.17 deleterious(0.03) benign(0.023) TCGA-CG-4437-01 2 98797602 98797602 G T VWA3B Missense_Mutation p.C413F 0.25 deleterious(0) probably_damaging(0.984) TCGA-CG-4437-01 2 99012681 99012681 A G CNGA3 Missense_Mutation p.R350G 0.11 deleterious(0.01) probably_damaging(0.988) TCGA-CG-4437-01 3 100148706 100148706 A G LNP1 Missense_Mutation p.R45G 0.09 deleterious(0) probably_damaging(0.999) TCGA-CG-4437-01 3 100645191 100645191 A C ABI3BP Missense_Mutation p.Y79D 0.07 deleterious(0) possibly_damaging(0.485) TCGA-CG-4437-01 3 111693337 111693337 C T PHLDB2 Missense_Mutation p.S1230L 0.27 deleterious(0) possibly_damaging(0.783) TCGA-CG-4437-01 3 112349073 112349073 T C CCDC80 Missense_Mutation p.Q641R 0.19 deleterious(0.03) probably_damaging(0.996) TCGA-CG-4437-01 3 11301940 11301940 A T HRH1 Missense_Mutation p.H406L 0.14 deleterious(0.01) possibly_damaging(0.672) TCGA-CG-4437-01 3 113378877 113378877 T A KIAA2018 Missense_Mutation p.N551I 0.24 probably_damaging(0.998) TCGA-CG-4437-01 3 120365162 120365162 A C HGD Missense_Mutation p.L201V 0.17 deleterious(0.04) possibly_damaging(0.594) TCGA-CG-4437-01 3 120976161 120976161 G T STXBP5L Missense_Mutation p.D605Y 0.24 deleterious(0) probably_damaging(0.968) TCGA-CG-4437-01 3 124180761 124180761 G C KALRN Missense_Mutation p.Q1291H 0.26 deleterious(0) probably_damaging(0.91) TCGA-CG-4437-01 3 124437938 124437950 CAGACATCTGGAG - RP11-71H17.7 5'Flank 0.26 TCGA-CG-4437-01 3 128890519 128890519 C A CNBP Nonsense_Mutation p.G28* 0.08 TCGA-CG-4437-01 3 12977448 12977448 C T IQSEC1 Silent p.Q370Q 0.23 TCGA-CG-4437-01 3 130279185 130279185 G T COL6A6 5'UTR 0.39 TCGA-CG-4437-01 3 135871472 135871472 C A MSL2 Missense_Mutation p.C84F 0.47 deleterious(0) probably_damaging(1) TCGA-CG-4437-01 3 160783228 160783228 C G PPM1L Missense_Mutation p.D204E 0.49 tolerated(0.82) benign(0.001) TCGA-CG-4437-01 3 168269696 168269696 G A MIR551B RNA 0.05 TCGA-CG-4437-01 3 170020968 170020968 A T PRKCI 3'UTR 0.09 TCGA-CG-4437-01 3 170929005 170929005 T A TNIK Missense_Mutation p.E69V 0.12 deleterious(0) unknown(0) TCGA-CG-4437-01 3 179052209 179052209 G C ZNF639 Nonstop_Mutation p.*486Sext*11 0.29 TCGA-CG-4437-01 3 193052762 193052762 T C ATP13A5 Missense_Mutation p.K357R 0.34 tolerated(0.72) benign(0.06) TCGA-CG-4437-01 3 195016595 195016595 G A ACAP2 Missense_Mutation p.A505V 0.07 tolerated(0.1) possibly_damaging(0.65) TCGA-CG-4437-01 3 195515615 195515615 C G MUC4 Missense_Mutation p.G946R 0.09 unknown(0) TCGA-CG-4437-01 3 195965617 195965617 G C PCYT1A Missense_Mutation p.A349G 0.05 tolerated(0.25) benign(0) TCGA-CG-4437-01 3 196748317 196748317 C T MFI2 Missense_Mutation p.V224M 0.27 deleterious(0) probably_damaging(1) TCGA-CG-4437-01 3 2924862 2924862 T A CNTN4 Missense_Mutation p.V229E 0.13 deleterious(0) probably_damaging(0.996) TCGA-CG-4437-01 3 29323137 29323137 C G RBMS3 5'UTR 0.34 TCGA-CG-4437-01 3 32804301 32804301 C G CNOT10 Missense_Mutation p.P656A 0.37 deleterious(0.02) probably_damaging(1) TCGA-CG-4437-01 3 44496716 44496716 C G ZNF445 Missense_Mutation p.G109A 0.23 tolerated(0.21) probably_damaging(0.939) TCGA-CG-4437-01 3 52439202 52439220 TGAACCCCATTGAGGCTGC - BAP1 Frame_Shift_Del p.S341Tfs*15 0.14 TCGA-CG-4437-01 3 57233803 57233803 G A HESX1 Silent p.T48T 0.41 TCGA-CG-4437-01 3 58552852 58552852 T A FAM107A Intron 0.21 TCGA-CG-4437-01 3 62751640 62751640 T G CADPS Missense_Mutation p.Q154P 0.12 deleterious(0.04) benign(0.153) TCGA-CG-4437-01 3 78795966 78795966 C A ROBO1 Missense_Mutation p.R195L 0.25 deleterious(0) probably_damaging(0.993) TCGA-CG-4437-01 3 97711779 97711779 C G GABRR3 3'Flank 0.25 TCGA-CG-4437-01 4 110897291 110897291 C A EGF Missense_Mutation p.F651L 0.28 tolerated(0.13) benign(0.013) TCGA-CG-4437-01 4 114275081 114275081 A T ANK2 Missense_Mutation p.K1769N 0.30 probably_damaging(0.996) TCGA-CG-4437-01 4 115597140 115597140 T A UGT8 Missense_Mutation p.V441D 0.20 deleterious(0) probably_damaging(1) TCGA-CG-4437-01 4 118006297 118006297 A C TRAM1L1 Missense_Mutation p.F85V 0.15 deleterious(0) probably_damaging(0.999) TCGA-CG-4437-01 4 121774656 121774656 C A PRDM5 Missense_Mutation p.A73S 0.10 deleterious(0.04) benign(0.068) TCGA-CG-4437-01 4 128628051 128628051 C T INTU Missense_Mutation p.T733I 0.19 deleterious(0.02) benign(0.012) TCGA-CG-4437-01 4 130030807 130030807 G C C4orf33 Missense_Mutation p.Q158H 0.12 tolerated(0.11) benign(0.053) TCGA-CG-4437-01 4 145655992 145655992 G A HHIP Silent p.T620T 0.18 TCGA-CG-4437-01 4 155237055 155237055 G A DCHS2 Missense_Mutation p.P1247L 0.08 deleterious(0) probably_damaging(1) TCGA-CG-4437-01 4 155241793 155241793 T A DCHS2 Silent p.T1131T 0.31 TCGA-CG-4437-01 4 170508717 170508717 T A NEK1 Missense_Mutation p.K200I 0.38 deleterious(0) probably_damaging(0.991) TCGA-CG-4437-01 4 170557218 170557218 T C CLCN3 Silent p.L47L 0.32 TCGA-CG-4437-01 4 38138770 38138770 G C TBC1D1 Missense_Mutation p.R1107S 0.30 tolerated(0.07) benign(0.011) TCGA-CG-4437-01 4 47565665 47565665 G A ATP10D Silent p.A912A 0.25 TCGA-CG-4437-01 4 5567010 5567010 G A EVC2 Silent p.L1212L 0.14 TCGA-CG-4437-01 4 76813023 76813023 C T PPEF2 Missense_Mutation p.G55E 0.12 tolerated(0.09) possibly_damaging(0.642) TCGA-CG-4437-01 4 85750257 85750257 G C WDFY3 Missense_Mutation p.L286V 0.05 tolerated(0.73) benign(0.034) TCGA-CG-4437-01 4 87696333 87696333 A G PTPN13 Missense_Mutation p.T1845A 0.13 tolerated(0.28) benign(0.011) TCGA-CG-4437-01 4 89198235 89198235 T G PPM1K Intron 0.25 TCGA-CG-4437-01 4 90848951 90848951 A T MMRN1 Missense_Mutation p.M321L 0.17 tolerated(0.46) benign(0.005) TCGA-CG-4437-01 4 94690491 94690491 T A GRID2 Missense_Mutation p.F831I 0.12 deleterious(0.01) probably_damaging(0.984) TCGA-CG-4437-01 4 96123976 96123976 C T UNC5C Missense_Mutation p.R681H 0.11 deleterious(0) probably_damaging(0.999) TCGA-CG-4437-01 5 112228333 112228333 T A ZRSR1 Missense_Mutation p.F333I 0.09 deleterious(0) probably_damaging(0.999) TCGA-CG-4437-01 5 135382059 135382059 G A TGFBI Missense_Mutation p.V112I 0.15 tolerated(1) benign(0.001) TCGA-CG-4437-01 5 135396544 135396544 A C TGFBI Missense_Mutation p.N609H 0.23 deleterious(0) probably_damaging(1) TCGA-CG-4437-01 5 140167654 140167677 GGTGCGCGCAGTGGACGCCGACTC - PCDHA1 In_Frame_Del p.V594_S601del 0.16 TCGA-CG-4437-01 5 140222821 140222821 G A PCDHA8 Missense_Mutation p.E639K 0.31 deleterious_low_confidence(0) possibly_damaging(0.878) TCGA-CG-4437-01 5 140250586 140250586 C T PCDHA11 Missense_Mutation p.T633M 0.32 deleterious_low_confidence(0.04) benign(0.418) TCGA-CG-4437-01 5 140432602 140432602 C T PCDHB1 Missense_Mutation p.A516V 0.10 tolerated(0.06) probably_damaging(0.999) TCGA-CG-4437-01 5 140482191 140482191 C T PCDHB3 Missense_Mutation p.S653L 0.28 deleterious_low_confidence(0) possibly_damaging(0.831) TCGA-CG-4437-01 5 140536576 140536576 G A PCDHB17 Missense_Mutation p.V334I 0.33 tolerated_low_confidence(0.13) possibly_damaging(0.508) TCGA-CG-4437-01 5 140581647 140581647 T C PCDHB11 Missense_Mutation p.L767P 0.27 deleterious_low_confidence(0.01) probably_damaging(0.966) TCGA-CG-4437-01 5 140731731 140731731 G A PCDHGB1 Missense_Mutation p.R635H 0.24 deleterious(0.01) probably_damaging(0.992) TCGA-CG-4437-01 5 141974992 141974992 T G FGF1 Missense_Mutation p.T111P 0.22 deleterious(0) probably_damaging(0.998) TCGA-CG-4437-01 5 150945266 150945266 C A FAT2 Missense_Mutation p.G1076V 0.31 probably_damaging(0.93) TCGA-CG-4437-01 5 159821852 159821852 C A C5orf54 Nonsense_Mutation p.G216* 0.09 TCGA-CG-4437-01 5 160061518 160061518 C G ATP10B Missense_Mutation p.E408D 0.25 tolerated(0.09) benign(0.02) TCGA-CG-4437-01 5 172513607 172513607 A G CREBRF Missense_Mutation p.D38G 0.11 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-CG-4437-01 5 176894295 176894295 C G DBN1 Missense_Mutation p.M174I 0.22 tolerated(0.29) probably_damaging(0.995) TCGA-CG-4437-01 5 177580502 177580502 C G NHP2 Missense_Mutation p.G74R 0.19 deleterious(0) probably_damaging(1) TCGA-CG-4437-01 5 178634644 178634644 C G ADAMTS2 Missense_Mutation p.R254T 0.11 tolerated(0.08) benign(0.199) TCGA-CG-4437-01 5 180057790 180057790 G A FLT4 Silent p.H55H 0.30 TCGA-CG-4437-01 5 180219900 180219900 C G MGAT1 Silent p.L24L 0.40 TCGA-CG-4437-01 5 26881298 26881298 G A CDH9 Missense_Mutation p.R773C 0.15 deleterious(0.01) probably_damaging(0.938) TCGA-CG-4437-01 5 32420129 32420129 C A ZFR Missense_Mutation p.A73S 0.13 tolerated(0.08) probably_damaging(0.935) TCGA-CG-4437-01 5 5239336 5239336 T C ADAMTS16 Missense_Mutation p.S743P 0.30 deleterious(0) probably_damaging(0.966) TCGA-CG-4437-01 5 5462216 5462216 C G KIAA0947 Missense_Mutation p.S923R 0.31 tolerated(0.43) benign(0.013) TCGA-CG-4437-01 5 66460529 66460529 C T MAST4 Missense_Mutation p.P1841L 0.08 benign(0.012) TCGA-CG-4437-01 5 76721718 76721718 G A PDE8B Missense_Mutation p.D849N 0.21 tolerated(0.07) probably_damaging(1) TCGA-CG-4437-01 5 95242421 95242421 A C ELL2 Missense_Mutation p.S183A 0.23 tolerated(0.27) benign(0.349) TCGA-CG-4437-01 6 116575244 116575244 G C TSPYL4 5'UTR 0.21 TCGA-CG-4437-01 6 12125636 12125636 A C HIVEP1 Missense_Mutation p.T1870P 0.17 tolerated(0.24) benign(0.002) TCGA-CG-4437-01 6 121768639 121768639 G C GJA1 Missense_Mutation p.V216L 0.11 deleterious(0) probably_damaging(0.999) TCGA-CG-4437-01 6 129371152 129371152 A T LAMA2 Nonsense_Mutation p.K68* 0.17 TCGA-CG-4437-01 6 129465225 129465225 A T LAMA2 Missense_Mutation p.R273S 0.34 deleterious(0) probably_damaging(0.999) TCGA-CG-4437-01 6 131919758 131919758 G C MED23 Silent p.L788L 0.14 TCGA-CG-4437-01 6 131944588 131944588 G A MED23 Missense_Mutation p.S100F 0.19 tolerated(0.46) benign(0.27) TCGA-CG-4437-01 6 132967012 132967043 ACTATCAGATTGCCAACGAGTGTGGTCAGAAT - TAAR1 Frame_Shift_Del p.I34Yfs*42 0.13 TCGA-CG-4437-01 6 138583879 138583879 T G KIAA1244 Missense_Mutation p.I420S 0.11 tolerated(0.39) benign(0.053) TCGA-CG-4437-01 6 139355334 139355358 GAAATTCATCGTTTGGGTTCAAAAA - ABRACL Frame_Shift_Del 0.14 TCGA-CG-4437-01 6 142736225 142736251 TGCTTTTGAGTAAGTATATTTTTAATC - GPR126 Splice_Site p.X888_splice 0.34 TCGA-CG-4437-01 6 146755717 146755717 C T GRM1 Silent p.L1124L 0.08 TCGA-CG-4437-01 6 151203921 151203921 C T MTHFD1L Silent p.I147I 0.37 TCGA-CG-4437-01 6 152650897 152650897 C T SYNE1 Missense_Mutation p.G4975R 0.28 benign(0.398) TCGA-CG-4437-01 6 152712632 152712632 C A SYNE1 Missense_Mutation p.G2595V 0.32 benign(0.001) TCGA-CG-4437-01 6 152841659 152841659 G A SYNE1 Missense_Mutation p.R82W 0.34 possibly_damaging(0.773) TCGA-CG-4437-01 6 161969977 161969977 A T PARK2 Nonsense_Mutation p.L331* 0.19 TCGA-CG-4437-01 6 166883360 166883360 C T RPS6KA2 Missense_Mutation p.R322H 0.19 deleterious(0) possibly_damaging(0.745) TCGA-CG-4437-01 6 18149277 18149277 C G TPMT Missense_Mutation p.E28Q 0.16 deleterious(0.03) benign(0.19) TCGA-CG-4437-01 6 24289091 24289091 A G DCDC2 Missense_Mutation p.S250P 0.13 tolerated(0.09) possibly_damaging(0.905) TCGA-CG-4437-01 6 25769239 25769239 G T SLC17A4 Missense_Mutation p.A40S 0.37 tolerated(0.11) benign(0.382) TCGA-CG-4437-01 6 25916075 25916075 G A SLC17A2 Missense_Mutation p.P318S 0.39 deleterious(0.02) probably_damaging(1) TCGA-CG-4437-01 6 27858481 27858481 A C HIST1H3J Silent p.A30A 0.10 TCGA-CG-4437-01 6 28097226 28097243 AGAATGAAGAGTTGTTCC - ZSCAN16 In_Frame_Del p.N183_Q188del 0.14 TCGA-CG-4437-01 6 28293917 28293917 T G ZSCAN31 3'UTR 0.13 TCGA-CG-4437-01 6 28472173 28472173 C T GPX6 Missense_Mutation p.V188M 0.27 deleterious(0) probably_damaging(0.986) TCGA-CG-4437-01 6 30114861 30114861 C G TRIM40 Missense_Mutation p.Q152E 0.38 tolerated(0.08) benign(0.251) TCGA-CG-4437-01 6 3154817 3154817 G C TUBB2A Silent p.A206A 0.39 TCGA-CG-4437-01 6 32065796 32065796 G A TNXB Silent p.Y60Y 0.07 TCGA-CG-4437-01 6 34825517 34825517 C T UHRF1BP1 Silent p.L530L 0.12 TCGA-CG-4437-01 6 35199608 35199608 C G SCUBE3 Missense_Mutation p.N147K 0.15 deleterious(0.01) possibly_damaging(0.611) TCGA-CG-4437-01 6 35980070 35980070 C A SLC26A8 Missense_Mutation p.D90Y 0.41 deleterious(0) probably_damaging(0.997) TCGA-CG-4437-01 6 36169369 36169369 G A BRPF3 Missense_Mutation p.E424K 0.32 tolerated(0.88) benign(0.007) TCGA-CG-4437-01 6 41558042 41558042 C A FOXP4 Missense_Mutation p.A464D 0.28 deleterious(0) possibly_damaging(0.822) TCGA-CG-4437-01 6 46658338 46658338 G C TDRD6 Missense_Mutation p.A825P 0.09 deleterious(0) probably_damaging(1) TCGA-CG-4437-01 6 46801255 46801255 C T MEP1A Missense_Mutation p.S530L 0.08 deleterious(0.03) benign(0.125) TCGA-CG-4437-01 6 51640698 51640698 T C PKHD1 Missense_Mutation p.E2821G 0.26 tolerated(0.09) benign(0.042) TCGA-CG-4437-01 6 52696671 52696671 T A GSTA5 Missense_Mutation p.E215V 0.20 tolerated(0.24) benign(0.007) TCGA-CG-4437-01 6 56917860 56917860 T C KIAA1586 Missense_Mutation p.L188S 0.12 tolerated(0.46) benign(0.018) TCGA-CG-4437-01 6 63989980 63989980 C G LGSN Missense_Mutation p.L492F 0.26 deleterious(0) possibly_damaging(0.56) TCGA-CG-4437-01 6 70812095 70812095 C T COL19A1 Missense_Mutation p.P420L 0.22 deleterious(0.01) unknown(0) TCGA-CG-4437-01 6 74171554 74171554 A C MTO1 5'UTR 0.40 TCGA-CG-4437-01 7 100350051 100350051 A T ZAN Missense_Mutation p.I775F 0.36 unknown(0) TCGA-CG-4437-01 7 100386946 100386946 G C ZAN Missense_Mutation p.S2444T 0.26 unknown(0) TCGA-CG-4437-01 7 100843711 100843711 C G MOGAT3 Silent p.V65V 0.39 TCGA-CG-4437-01 7 104377251 104377251 T C LHFPL3 Missense_Mutation p.L192P 0.32 deleterious(0) probably_damaging(1) TCGA-CG-4437-01 7 104753013 104753013 G C KMT2E Missense_Mutation p.V1604L 0.32 deleterious_low_confidence(0.02) benign(0.167) TCGA-CG-4437-01 7 111127338 111127338 T A IMMP2L Missense_Mutation p.K65N 0.26 tolerated(0.37) benign(0.096) TCGA-CG-4437-01 7 135122926 135122932 GCCCATT - CNOT4 Frame_Shift_Del p.N50Ffs*27 0.09 TCGA-CG-4437-01 7 138252371 138252371 C T TRIM24 Missense_Mutation p.A559V 0.28 tolerated(0.22) benign(0.104) TCGA-CG-4437-01 7 138453928 138453928 C G ATP6V0A4 Missense_Mutation p.E62D 0.08 tolerated(0.12) possibly_damaging(0.896) TCGA-CG-4437-01 7 142045538 142045538 A T TRBV4-2 Silent p.G22G 0.15 TCGA-CG-4437-01 7 150934818 150934818 G C CHPF2 Missense_Mutation p.G457A 0.10 deleterious(0) benign(0.42) TCGA-CG-4437-01 7 152517527 152517527 G T ACTR3B Missense_Mutation p.K228N 0.47 deleterious(0) possibly_damaging(0.81) TCGA-CG-4437-01 7 18067192 18067192 T A PRPS1L1 Missense_Mutation p.I72F 0.23 deleterious(0.01) possibly_damaging(0.904) TCGA-CG-4437-01 7 23296606 23296606 G A GPNMB Missense_Mutation p.V155I 0.16 tolerated(0.12) benign(0.022) TCGA-CG-4437-01 7 23307588 23307588 G C GPNMB Missense_Mutation p.V413L 0.18 tolerated(0.12) benign(0.071) TCGA-CG-4437-01 7 23385595 23385595 A T IGF2BP3 Missense_Mutation p.I302N 0.39 deleterious(0) probably_damaging(0.941) TCGA-CG-4437-01 7 31829844 31829844 G A PDE1C Intron 0.12 TCGA-CG-4437-01 7 35673968 35673968 A C HERPUD2 Missense_Mutation p.V338G 0.23 tolerated(0.58) benign(0.003) TCGA-CG-4437-01 7 48321025 48321025 G A ABCA13 Missense_Mutation p.V2938I 0.18 benign(0.001) TCGA-CG-4437-01 7 48443297 48443301 ACTTA - ABCA13 Frame_Shift_Del p.L3965Sfs*35 0.34 TCGA-CG-4437-01 7 48494772 48494772 T A ABCA13 Missense_Mutation p.L4235H 0.25 probably_damaging(0.957) TCGA-CG-4437-01 7 48559761 48559761 G T ABCA13 Missense_Mutation p.G4641V 0.12 probably_damaging(1) TCGA-CG-4437-01 7 73790554 73790577 GGCTAATGGACAACTGGAAATCCA - CLIP2 In_Frame_Del p.G608_K616delinsE 0.14 TCGA-CG-4437-01 7 73973284 73973284 G T GTF2IRD1 Missense_Mutation p.G766V 0.27 deleterious(0) probably_damaging(0.998) TCGA-CG-4437-01 7 7555464 7555464 G T COL28A1 Missense_Mutation p.P288H 0.15 deleterious(0) probably_damaging(0.941) TCGA-CG-4437-01 7 87092195 87092195 C A ABCB4 Missense_Mutation p.L55F 0.26 tolerated(0.23) benign(0.012) TCGA-CG-4437-01 7 88956755 88956755 A G ZNF804B Missense_Mutation p.H116R 0.28 deleterious(0) probably_damaging(0.998) TCGA-CG-4437-01 7 91871404 91871404 G A KRIT1 Missense_Mutation p.R16C 0.12 deleterious(0) probably_damaging(0.999) TCGA-CG-4437-01 7 92763243 92763243 T A SAMD9L Missense_Mutation p.K681I 0.08 tolerated(0.09) benign(0.209) TCGA-CG-4437-01 7 93108743 93108743 A C CALCR Missense_Mutation p.V61G 0.24 deleterious(0.03) benign(0.234) TCGA-CG-4437-01 7 95165756 95165756 A G ASB4 Missense_Mutation p.Q329R 0.23 tolerated(0.27) benign(0.042) TCGA-CG-4437-01 8 101083727 101083727 G C RGS22 Missense_Mutation p.S155C 0.19 tolerated(0.2) probably_damaging(0.935) TCGA-CG-4437-01 8 107773616 107773616 G A ABRA Silent p.F265F 0.09 TCGA-CG-4437-01 8 110569219 110569219 G T EBAG9 Missense_Mutation p.G126V 0.11 deleterious(0.01) possibly_damaging(0.663) TCGA-CG-4437-01 8 113363439 113363439 A T CSMD3 Missense_Mutation p.V2097E 0.07 deleterious(0) probably_damaging(0.985) TCGA-CG-4437-01 8 113662442 113662442 G A CSMD3 Silent p.P1047P 0.39 TCGA-CG-4437-01 8 121293176 121293176 A C COL14A1 Missense_Mutation p.E1234D 0.11 deleterious(0.04) benign(0.012) TCGA-CG-4437-01 8 124251354 124251354 C A C8orf76 Missense_Mutation p.D50Y 0.24 deleterious(0) probably_damaging(0.931) TCGA-CG-4437-01 8 131859736 131859736 C T ADCY8 Silent p.S812S 0.10 TCGA-CG-4437-01 8 134024148 134024175 TCTCTGGACTCGTGGCAGTCCCTGGCCC - TG Frame_Shift_Del p.D2091Qfs*53 0.16 TCGA-CG-4437-01 8 139636017 139636017 G A COL22A1 Silent p.G1243G 0.40 TCGA-CG-4437-01 8 142446065 142446065 C G PTP4A3 3'Flank 0.06 TCGA-CG-4437-01 8 143558756 143558756 C G BAI1 Silent p.A411A 0.14 TCGA-CG-4437-01 8 20107748 20107748 G A LZTS1 Silent p.L426L 0.26 TCGA-CG-4437-01 8 21842211 21842211 C G XPO7 Missense_Mutation p.D444E 0.27 tolerated(1) benign(0.001) TCGA-CG-4437-01 8 21959336 21959336 G C FAM160B2 Missense_Mutation p.D609H 0.17 deleterious(0.02) possibly_damaging(0.86) TCGA-CG-4437-01 8 22006340 22006340 C T LGI3 Missense_Mutation p.R327H 0.14 tolerated(0.05) probably_damaging(0.98) TCGA-CG-4437-01 8 22458487 22458487 T A C8orf58 Missense_Mutation p.S45T 0.18 tolerated(0.17) benign(0.015) TCGA-CG-4437-01 8 23225917 23225917 A T LOXL2 5'UTR 0.29 TCGA-CG-4437-01 8 24257746 24257747 GG C ADAMDEC1 Frame_Shift_Del p.G359Lfs*17 0.16 TCGA-CG-4437-01 8 27278199 27278199 C A PTK2B Missense_Mutation p.P137T 0.14 deleterious(0) probably_damaging(0.925) TCGA-CG-4437-01 8 27462624 27462624 G T CLU Missense_Mutation p.P216T 0.10 tolerated(0.12) possibly_damaging(0.447) TCGA-CG-4437-01 8 27762153 27762153 T A SCARA5 Intron 0.11 TCGA-CG-4437-01 8 27762160 27762160 G T SCARA5 Intron 0.12 TCGA-CG-4437-01 8 28574839 28574839 C G EXTL3 Silent p.R421R 0.09 TCGA-CG-4437-01 8 39613329 39613329 C T ADAM2 Missense_Mutation p.C572Y 0.19 deleterious(0) probably_damaging(1) TCGA-CG-4437-01 8 57358361 57358361 C T PENK Intron 0.11 TCGA-CG-4437-01 8 59058842 59058842 C T FAM110B Missense_Mutation p.A18V 0.33 deleterious(0.03) possibly_damaging(0.448) TCGA-CG-4437-01 8 618699 618699 A T ERICH1 Missense_Mutation p.V386E 0.08 deleterious(0) probably_damaging(0.974) TCGA-CG-4437-01 8 67405869 67405869 G T C8orf46 5'UTR 0.08 TCGA-CG-4437-01 8 69033245 69033245 G A PREX2 Missense_Mutation p.V1229I 0.12 tolerated(1) benign(0.003) TCGA-CG-4437-01 8 75757475 75757487 ATGTGCACACATT - PI15 Frame_Shift_Del p.M169Ifs*12 0.08 TCGA-CG-4437-01 8 89339508 89339508 G A MMP16 5'UTR 0.13 TCGA-CG-4437-01 9 107599709 107599740 CTCAGCCATGACCTGCCTTGTGGCTGGAGTGT - ABCA1 Frame_Shift_Del p.D388Gfs*13 0.33 TCGA-CG-4437-01 9 111616958 111616958 G A ACTL7B 3'UTR 0.05 TCGA-CG-4437-01 9 112900351 112900351 G T PALM2-AKAP2 Missense_Mutation p.A843S 0.20 tolerated(0.83) benign(0.004) TCGA-CG-4437-01 9 125377696 125377696 G A OR1Q1 Missense_Mutation p.R227Q 0.13 tolerated(0.08) benign(0.006) TCGA-CG-4437-01 9 127089678 127089678 T C NEK6 Silent p.G226G 0.11 TCGA-CG-4437-01 9 127572405 127572405 T C OLFML2A Missense_Mutation p.L558P 0.36 deleterious(0) probably_damaging(0.928) TCGA-CG-4437-01 9 130507127 130507127 G A SH2D3C Nonsense_Mutation p.R506* 0.34 TCGA-CG-4437-01 9 130630267 130630267 G T AK1 3'UTR 0.17 TCGA-CG-4437-01 9 135926336 135926336 G A GTF3C5 Missense_Mutation p.D247N 0.17 tolerated(0.06) possibly_damaging(0.623) TCGA-CG-4437-01 9 139753255 139753255 C T MAMDC4 Missense_Mutation p.P969L 0.14 tolerated(0.27) benign(0.046) TCGA-CG-4437-01 9 140773521 140773521 G A CACNA1B Missense_Mutation p.M100I 0.22 deleterious(0.01) benign(0.017) TCGA-CG-4437-01 9 2086906 2086906 C A SMARCA2 Missense_Mutation p.N868K 0.25 benign(0.053) TCGA-CG-4437-01 9 27949741 27949741 C T LINGO2 Missense_Mutation p.R310H 0.07 tolerated(0.1) benign(0.002) TCGA-CG-4437-01 9 34993435 34993435 G C DNAJB5 Missense_Mutation p.E183Q 0.35 deleterious(0) probably_damaging(0.961) TCGA-CG-4437-01 9 5431897 5431897 C T PLGRKT Silent p.Q27Q 0.17 TCGA-CG-4437-01 9 72006631 72006631 G A FAM189A2 Missense_Mutation p.G422R 0.12 tolerated(0.41) benign(0.288) TCGA-CG-4437-01 9 79270385 79270385 G T PRUNE2 Silent p.P2770P 0.09 TCGA-CG-4437-01 9 79824435 79824435 G A VPS13A Missense_Mutation p.R161H 0.09 deleterious(0) probably_damaging(0.937) TCGA-CG-4437-01 9 95152246 95152246 G C OGN Missense_Mutation p.L174V 0.42 tolerated(0.06) probably_damaging(1) TCGA-CG-4437-01 X 106083920 106083920 A T TBC1D8B Missense_Mutation p.T509S 0.48 tolerated(0.52) benign(0.002) TCGA-CG-4437-01 X 106769952 106769952 G A FRMPD3 Missense_Mutation p.R78Q 0.52 tolerated(0.07) benign(0.146) TCGA-CG-4437-01 X 122820398 122820398 C G THOC2 Missense_Mutation p.Q256H 0.42 tolerated(0.1) benign(0.248) TCGA-CG-4437-01 X 122829949 122829949 G C THOC2 Missense_Mutation p.L175V 0.62 deleterious(0) possibly_damaging(0.751) TCGA-CG-4437-01 X 132439865 132439865 G A GPC4 Missense_Mutation p.R364C 0.54 deleterious(0) probably_damaging(0.997) TCGA-CG-4437-01 X 149638353 149638353 C T MAMLD1 Missense_Mutation p.P145S 0.56 tolerated(0.08) benign(0.041) TCGA-CG-4437-01 X 150832640 150832640 C T PASD1 Silent p.Y297Y 0.16 TCGA-CG-4437-01 X 150891289 150891289 C G FATE1 3'UTR 0.59 TCGA-CG-4437-01 X 153580566 153580566 G A FLNA Missense_Mutation p.A2251V 0.79 deleterious(0.03) possibly_damaging(0.502) TCGA-CG-4437-01 X 153925470 153925470 T C GAB3 Missense_Mutation p.D455G 0.54 deleterious(0) probably_damaging(0.999) TCGA-CG-4437-01 X 16142005 16142005 C T GRPR 5'UTR 0.46 TCGA-CG-4437-01 X 26212099 26212099 C T MAGEB6 Missense_Mutation p.R46C 0.27 tolerated(0.16) benign(0.001) TCGA-CG-4437-01 X 37961644 37961644 A T SYTL5 Missense_Mutation p.Q371L 0.52 tolerated(0.57) benign(0.002) TCGA-CG-4437-01 X 51640305 51640305 C T MAGED1 Missense_Mutation p.A531V 0.51 tolerated_low_confidence(0.2) probably_damaging(0.99) TCGA-CG-4437-01 X 65417541 65417541 C A HEPH Silent p.G560G 0.45 TCGA-CG-4437-01 X 70466474 70466474 T A ZMYM3 Missense_Mutation p.T795S 0.55 tolerated(0.98) benign(0) TCGA-CG-4437-01 X 73749163 73749163 C G SLC16A2 Missense_Mutation p.T429S 0.14 tolerated(1) possibly_damaging(0.646) TCGA-CG-4437-01 X 83576953 83576953 C A HDX Missense_Mutation p.D673Y 0.40 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-CG-4437-01 X 91133941 91133955 ACAGAGTCACACTAG - PCDH11X In_Frame_Del p.R902_D906del 0.09 TCGA-CG-4438-01 10 105145090 105145090 C A TAF5 Missense_Mutation p.L558M 0.18 deleterious(0.05) probably_damaging(0.92) TCGA-CG-4438-01 10 115377264 115377264 C T NRAP Missense_Mutation p.D975N 0.25 deleterious(0.03) probably_damaging(1) TCGA-CG-4438-01 10 119805578 119805578 T C RAB11FIP2 Missense_Mutation p.T33A 0.43 deleterious(0.01) benign(0.389) TCGA-CG-4438-01 10 134942261 134942261 G A GPR123 Missense_Mutation p.R310H 0.31 deleterious(0) probably_damaging(0.999) TCGA-CG-4438-01 10 30900817 30900817 C T LYZL2 3'UTR 0.55 TCGA-CG-4438-01 10 75563058 75563058 T C NDST2 Silent p.S734S 0.06 TCGA-CG-4438-01 10 86177563 86177563 G T CCSER2 Missense_Mutation p.D551Y 0.44 deleterious(0) probably_damaging(1) TCGA-CG-4438-01 10 97023620 97023620 C T PDLIM1 Splice_Site p.X178_splice 0.40 TCGA-CG-4438-01 10 98172985 98172985 C T TLL2 Missense_Mutation p.D338N 0.21 deleterious(0) probably_damaging(0.996) TCGA-CG-4438-01 11 102482556 102482556 G A MMP20 Silent p.S151S 0.33 TCGA-CG-4438-01 11 107535878 107535878 G A ELMOD1 Silent p.A320A 0.30 TCGA-CG-4438-01 11 111942457 111942457 A C PIH1D2 Missense_Mutation p.I68S 0.10 deleterious(0) probably_damaging(0.984) TCGA-CG-4438-01 11 118390341 118390341 G A KMT2A Missense_Mutation p.G3719S 0.25 probably_damaging(1) TCGA-CG-4438-01 11 1276097 1276097 C G MUC5B Silent p.T5217T 0.11 TCGA-CG-4438-01 11 20657905 20657905 C G SLC6A5 Silent p.L559L 0.15 TCGA-CG-4438-01 11 3069211 3069211 G C CARS Missense_Mutation p.L16V 0.38 deleterious_low_confidence(0) possibly_damaging(0.659) TCGA-CG-4438-01 11 6007357 6007357 G A OR52L1 Silent p.V268V 0.42 TCGA-CG-4438-01 11 65315174 65315174 C T LTBP3 Silent p.G655G 0.29 TCGA-CG-4438-01 11 67266131 67266139 GGCCCAAGG - PITPNM1 In_Frame_Del p.A471_H474delinsD 0.36 TCGA-CG-4438-01 11 82698634 82698634 A G RAB30 Missense_Mutation p.L119S 0.26 deleterious(0) probably_damaging(0.997) TCGA-CG-4438-01 12 106633923 106633923 A C CKAP4 Missense_Mutation p.F230V 0.18 deleterious(0) probably_damaging(0.988) TCGA-CG-4438-01 12 108600092 108600093 - T WSCD2 Frame_Shift_Ins p.D137Vfs*14 0.23 TCGA-CG-4438-01 12 114803972 114803972 T G TBX5 Missense_Mutation p.K327T 0.44 deleterious(0.03) possibly_damaging(0.56) TCGA-CG-4438-01 12 120882484 120882484 C A TRIAP1 3'UTR 0.70 TCGA-CG-4438-01 12 122676081 122676081 C T LRRC43 Silent p.G352G 0.19 TCGA-CG-4438-01 12 25232696 25232696 A G LRMP Silent p.Q81Q 0.46 TCGA-CG-4438-01 12 48174023 48174023 C T SLC48A1 Missense_Mutation p.R134W 0.31 deleterious(0) probably_damaging(0.986) TCGA-CG-4438-01 12 49431894 49431894 C T KMT2D Missense_Mutation p.R3082Q 0.26 probably_damaging(0.978) TCGA-CG-4438-01 12 49663249 49663249 G C TUBA1C Missense_Mutation p.R2P 0.09 deleterious_low_confidence(0.02) probably_damaging(0.997) TCGA-CG-4438-01 12 5021353 5021368 GCACCGAGATAGCTGA - KCNA1 Frame_Shift_Del p.T271Rfs*22 0.13 TCGA-CG-4438-01 12 53708088 53708088 G C AAAS Missense_Mutation p.S228C 0.20 deleterious(0.04) probably_damaging(0.96) TCGA-CG-4438-01 13 101712255 101712255 C T NALCN Missense_Mutation p.R1607Q 0.72 tolerated(0.39) benign(0.001) TCGA-CG-4438-01 13 39588424 39588424 G C PROSER1 Nonsense_Mutation p.S322* 0.13 TCGA-CG-4438-01 13 70681344 70681344 C A KLHL1 Missense_Mutation p.C163F 0.15 deleterious_low_confidence(0.05) benign(0) TCGA-CG-4438-01 13 76135004 76135004 C G UCHL3 Missense_Mutation p.P57R 0.14 deleterious(0) probably_damaging(0.997) TCGA-CG-4438-01 14 101012976 101012976 T G BEGAIN Missense_Mutation p.E13A 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-CG-4438-01 14 103871565 103871565 A G MARK3 Silent p.A68A 0.22 TCGA-CG-4438-01 14 106926236 106926236 C T IGHV3-43 Missense_Mutation p.M102I 0.14 deleterious_low_confidence(0.01) benign(0.331) TCGA-CG-4438-01 14 22314956 22314956 C G TRAV8-2 Missense_Mutation p.L5V 0.33 tolerated(0.11) benign(0.044) TCGA-CG-4438-01 14 22772214 22772214 A T TRAV39 Missense_Mutation p.N36I 0.23 tolerated(0.24) benign(0.188) TCGA-CG-4438-01 14 53513599 53513599 C A DDHD1 Missense_Mutation p.V864F 0.32 tolerated(0.06) possibly_damaging(0.474) TCGA-CG-4438-01 14 65259825 65259825 C T SPTB Silent p.T852T 0.05 TCGA-CG-4438-01 14 96922757 96922757 A G AK7 Missense_Mutation p.Y391C 0.23 deleterious(0) probably_damaging(1) TCGA-CG-4438-01 15 34649144 34649144 G A NUTM1 Missense_Mutation p.E951K 0.73 deleterious(0.05) benign(0.079) TCGA-CG-4438-01 15 53908006 53908006 C A WDR72 Silent p.L799L 0.18 TCGA-CG-4438-01 15 86266314 86266314 G C AKAP13 Missense_Mutation p.E2174Q 0.20 deleterious(0) probably_damaging(1) TCGA-CG-4438-01 16 3294540 3294540 T C MEFV Missense_Mutation p.I553M 0.34 tolerated(0.17) benign(0.001) TCGA-CG-4438-01 16 87377307 87377307 G C FBXO31 Missense_Mutation p.P185R 0.18 deleterious(0) possibly_damaging(0.781) TCGA-CG-4438-01 16 89357087 89357087 G A ANKRD11 Missense_Mutation p.R183C 0.58 probably_damaging(0.993) TCGA-CG-4438-01 17 11711130 11711130 G C DNAH9 Silent p.L2834L 0.20 TCGA-CG-4438-01 17 16630939 16630939 A C CCDC144A Missense_Mutation p.K664Q 0.43 tolerated(0.09) possibly_damaging(0.788) TCGA-CG-4438-01 17 29182287 29182287 G A ATAD5 Silent p.V859V 0.18 TCGA-CG-4438-01 17 37187529 37187529 G A CTD-2206N4.2 5'Flank 0.64 TCGA-CG-4438-01 17 38131252 38131252 G A GSDMA Missense_Mutation p.V336I 0.32 deleterious(0.01) benign(0.021) TCGA-CG-4438-01 17 38173124 38173124 G A CSF3 Missense_Mutation p.R179H 0.22 tolerated(0.15) probably_damaging(1) TCGA-CG-4438-01 17 43227413 43227413 G C HEXIM1 Missense_Mutation p.E286Q 0.20 tolerated(0.11) probably_damaging(0.976) TCGA-CG-4438-01 17 51902309 51902309 G A KIF2B Missense_Mutation p.A639T 0.30 tolerated(1) benign(0.038) TCGA-CG-4438-01 17 73509894 73509894 C G CASKIN2 5'UTR 0.08 TCGA-CG-4438-01 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.63 TCGA-CG-4438-01 17 8707449 8707449 G A PIK3R6 Missense_Mutation p.T672M 0.75 tolerated(0.05) possibly_damaging(0.885) TCGA-CG-4438-01 18 51888235 51888235 A G C18orf54 Missense_Mutation p.H169R 0.41 tolerated(0.19) benign(0.006) TCGA-CG-4438-01 18 5292000 5292000 C A ZBTB14 Missense_Mutation p.E69D 0.20 tolerated(0.44) possibly_damaging(0.454) TCGA-CG-4438-01 18 59925233 59925233 A C KIAA1468 Missense_Mutation p.E650A 0.67 deleterious(0) probably_damaging(0.983) TCGA-CG-4438-01 19 16222527 16222527 G T RAB8A 5'UTR 0.16 TCGA-CG-4438-01 19 18729278 18729278 G A TMEM59L Silent p.A292A 0.47 TCGA-CG-4438-01 19 2918293 2918293 A C ZNF57 3'UTR 0.26 TCGA-CG-4438-01 19 37369000 37369000 A G ZNF345 Missense_Mutation p.E423G 0.32 deleterious(0.01) benign(0.272) TCGA-CG-4438-01 19 37904383 37904383 G C ZNF569 Missense_Mutation p.Q393E 0.21 tolerated(0.41) probably_damaging(0.977) TCGA-CG-4438-01 19 39019004 39019004 G T RYR1 Missense_Mutation p.R3628L 0.05 benign(0.005) TCGA-CG-4438-01 19 40368443 40368443 C G FCGBP Missense_Mutation p.S4302T 0.08 benign(0.262) TCGA-CG-4438-01 19 40889902 40889902 C T HIPK4 Missense_Mutation p.V204I 0.28 tolerated(0.11) benign(0.096) TCGA-CG-4438-01 19 41289882 41289882 G T RAB4B Missense_Mutation p.S111I 0.11 deleterious(0) possibly_damaging(0.784) TCGA-CG-4438-01 19 42311150 42311150 G A CEACAM3 Intron 0.37 TCGA-CG-4438-01 19 42814223 42814223 C G PRR19 Missense_Mutation p.R163G 0.11 tolerated(0.25) benign(0.043) TCGA-CG-4438-01 19 43382106 43382106 C G PSG1 Missense_Mutation p.G130A 0.14 tolerated(0.74) benign(0.016) TCGA-CG-4438-01 19 50548396 50548396 T G ZNF473 Silent p.T232T 0.39 TCGA-CG-4438-01 19 57065109 57065109 G A ZFP28 Missense_Mutation p.E319K 0.09 tolerated(0.16) benign(0.025) TCGA-CG-4438-01 19 57325084 57325084 G A PEG3 Missense_Mutation p.R1576C 0.38 deleterious(0.02) probably_damaging(0.959) TCGA-CG-4438-01 19 57840315 57840315 G A ZNF543 Silent p.T495T 0.17 TCGA-CG-4438-01 1 103470026 103470026 C A COL11A1 Nonsense_Mutation p.G640* 0.25 TCGA-CG-4438-01 1 109363183 109363183 C T AKNAD1 Missense_Mutation p.E745K 0.36 deleterious(0.01) benign(0.126) TCGA-CG-4438-01 1 111216728 111216728 C T KCNA3 Missense_Mutation p.G235D 0.26 deleterious(0.03) possibly_damaging(0.638) TCGA-CG-4438-01 1 144828697 144828697 C T NBPF9 Silent p.F655F 0.11 TCGA-CG-4438-01 1 154528413 154528413 A T UBE2Q1 Missense_Mutation p.W119R 0.12 deleterious(0) probably_damaging(1) TCGA-CG-4438-01 1 155899127 155899127 T C KIAA0907 Missense_Mutation p.R142G 0.06 deleterious(0) probably_damaging(0.99) TCGA-CG-4438-01 1 156006759 156006759 G A UBQLN4 3'UTR 0.50 TCGA-CG-4438-01 1 156837949 156837949 G C NTRK1 Missense_Mutation p.R161P 0.17 tolerated(0.11) possibly_damaging(0.502) TCGA-CG-4438-01 1 171086533 171086533 T G FMO3 Missense_Mutation p.L517R 0.43 deleterious(0.04) possibly_damaging(0.908) TCGA-CG-4438-01 1 186023018 186023018 A C HMCN1 Missense_Mutation p.L2254F 0.55 probably_damaging(0.998) TCGA-CG-4438-01 1 204429459 204429459 T G PIK3C2B Missense_Mutation p.I499L 0.39 tolerated(0.1) benign(0.019) TCGA-CG-4438-01 1 221879717 221879717 G A DUSP10 Silent p.S301S 0.50 TCGA-CG-4438-01 1 223116388 223116388 C G DISP1 Missense_Mutation p.P75A 0.05 tolerated_low_confidence(0.09) benign(0.008) TCGA-CG-4438-01 1 226175632 226175632 C T SDE2 Missense_Mutation p.V367I 0.08 tolerated(0.42) benign(0.003) TCGA-CG-4438-01 1 23763414 23763414 G C ASAP3 Missense_Mutation p.S489C 0.31 deleterious(0) probably_damaging(0.997) TCGA-CG-4438-01 1 248551027 248551027 A G OR2T6 Missense_Mutation p.I40V 0.17 tolerated(0.61) benign(0.001) TCGA-CG-4438-01 1 27428929 27428929 C T SLC9A1 Silent p.V589V 0.30 TCGA-CG-4438-01 1 31418206 31418206 G A PUM1 Missense_Mutation p.A994V 0.36 deleterious(0) possibly_damaging(0.656) TCGA-CG-4438-01 1 3712477 3712477 G A LRRC47 Silent p.D188D 0.45 TCGA-CG-4438-01 1 39878360 39878360 T - KIAA0754 Frame_Shift_Del p.P674Qfs*15 0.26 TCGA-CG-4438-01 1 6270330 6270330 T G RNF207 Missense_Mutation p.L283W 0.36 deleterious(0) probably_damaging(1) TCGA-CG-4438-01 20 1546812 1546812 G A SIRPB1 Nonsense_Mutation p.Q396* 0.14 TCGA-CG-4438-01 20 18448239 18448239 A G POLR3F Intron 0.06 TCGA-CG-4438-01 20 1963678 1963678 G A PDYN Missense_Mutation p.T18I 0.24 deleterious(0.03) benign(0.003) TCGA-CG-4438-01 20 2639420 2639420 G C IDH3B Missense_Mutation p.H379D 0.03 tolerated(0.17) benign(0.013) TCGA-CG-4438-01 20 33054156 33054156 G A ITCH Intron 0.09 TCGA-CG-4438-01 20 34297154 34297154 T C RBM39 Missense_Mutation p.Q406R 0.06 tolerated(0.63) benign(0.062) TCGA-CG-4438-01 20 42680082 42680082 G A TOX2 Missense_Mutation p.R183Q 0.27 tolerated(0.1) probably_damaging(0.982) TCGA-CG-4438-01 20 50769645 50769645 C T ZFP64 Silent p.E362E 0.39 TCGA-CG-4438-01 20 61440999 61440999 C T OGFR Missense_Mutation p.H128Y 0.08 deleterious(0) probably_damaging(0.995) TCGA-CG-4438-01 20 62044861 62044861 C T KCNQ2 Missense_Mutation p.E569K 0.25 deleterious(0) probably_damaging(0.977) TCGA-CG-4438-01 20 8745967 8745967 C T PLCB1 Silent p.A964A 0.10 TCGA-CG-4438-01 21 30415748 30415748 G C USP16 Missense_Mutation p.G395A 0.32 tolerated(0.75) benign(0.026) TCGA-CG-4438-01 21 47976888 47976888 A G DIP2A Missense_Mutation p.I1179V 0.56 tolerated(0.1) benign(0.018) TCGA-CG-4438-01 22 26995450 26995450 G C CRYBB1 3'UTR 0.24 TCGA-CG-4438-01 22 36537683 36537683 G A APOL3 Silent p.T258T 0.24 TCGA-CG-4438-01 2 169721415 169721415 C T NOSTRIN Missense_Mutation p.H543Y 0.53 tolerated(0.58) benign(0.05) TCGA-CG-4438-01 2 17952527 17952527 G C GEN1 Missense_Mutation p.A259P 0.14 tolerated(0.13) benign(0.015) TCGA-CG-4438-01 2 219509370 219509370 G C ZNF142 Silent p.P623P 0.14 TCGA-CG-4438-01 2 231103004 231103004 C T SP140 Missense_Mutation p.T105I 0.10 deleterious(0.01) probably_damaging(0.979) TCGA-CG-4438-01 2 242035736 242035736 G T MTERFD2 Missense_Mutation p.Q275K 0.54 deleterious(0.01) possibly_damaging(0.861) TCGA-CG-4438-01 2 28113217 28113217 C G RBKS 5'UTR 0.09 TCGA-CG-4438-01 2 28814580 28814580 G T PLB1 Missense_Mutation p.W714L 0.14 tolerated(0.77) benign(0.002) TCGA-CG-4438-01 2 44547601 44547601 C T SLC3A1 Silent p.A627A 0.61 TCGA-CG-4438-01 3 159976285 159976285 T C IFT80 3'UTR 0.64 TCGA-CG-4438-01 3 52621493 52621493 C T PBRM1 Intron 0.32 TCGA-CG-4438-01 3 56468565 56468565 C A ERC2 Silent p.L157L 0.23 TCGA-CG-4438-01 4 123167363 123167363 G A KIAA1109 Silent p.T1698T 0.30 TCGA-CG-4438-01 4 126370353 126370353 G A FAT4 Missense_Mutation p.V2728I 0.75 benign(0.004) TCGA-CG-4438-01 4 154216639 154216639 C T TRIM2 Missense_Mutation p.R321W 0.54 deleterious(0) benign(0.39) TCGA-CG-4438-01 4 38798807 38798807 C T TLR1 Missense_Mutation p.G549D 0.25 tolerated(0.21) benign(0.01) TCGA-CG-4438-01 5 140764618 140764618 C T PCDHGA7 Missense_Mutation p.R718C 0.20 deleterious_low_confidence(0.01) benign(0.066) TCGA-CG-4438-01 5 38445656 38445656 T C EGFLAM Intron 0.30 TCGA-CG-4438-01 5 41160429 41160429 G T C6 Missense_Mutation p.A500E 0.04 deleterious(0) probably_damaging(1) TCGA-CG-4438-01 5 5232503 5232503 T G ADAMTS16 Missense_Mutation p.V575G 0.47 deleterious(0) probably_damaging(0.986) TCGA-CG-4438-01 5 64967780 64967780 T G SGTB Silent p.G255G 0.07 TCGA-CG-4438-01 5 73992920 73992920 C T HEXB Missense_Mutation p.L220F 0.63 tolerated(0.1) benign(0.149) TCGA-CG-4438-01 5 76932669 76932669 C T OTP Missense_Mutation p.G142R 0.61 tolerated(0.11) probably_damaging(0.999) TCGA-CG-4438-01 6 129663595 129663595 G A LAMA2 Silent p.L1473L 0.40 TCGA-CG-4438-01 6 152765653 152765653 A T SYNE1 Missense_Mutation p.S1244T 0.18 benign(0.146) TCGA-CG-4438-01 6 152841662 152841662 G A SYNE1 Missense_Mutation p.R81C 0.15 possibly_damaging(0.658) TCGA-CG-4438-01 6 154520945 154520945 T C IPCEF1 Missense_Mutation p.H256R 0.34 tolerated(0.48) benign(0.002) TCGA-CG-4438-01 6 155458677 155458677 G A TIAM2 Missense_Mutation p.V521M 0.38 tolerated(0.15) possibly_damaging(0.492) TCGA-CG-4438-01 6 161173982 161173982 A C PLG Missense_Mutation p.L774F 0.17 deleterious(0.02) probably_damaging(0.974) TCGA-CG-4438-01 6 29598366 29598366 G A GABBR1 Missense_Mutation p.T115M 0.31 tolerated_low_confidence(0.09) possibly_damaging(0.471) TCGA-CG-4438-01 6 29912352 29912352 G C HLA-A Missense_Mutation p.G324A 0.09 tolerated_low_confidence(0.16) probably_damaging(0.999) TCGA-CG-4438-01 6 32906580 32906580 G A HLA-DMB Missense_Mutation p.A73V 0.22 deleterious(0) probably_damaging(0.964) TCGA-CG-4438-01 6 42672253 42672253 C G PRPH2 Missense_Mutation p.Q226H 0.11 tolerated(0.43) benign(0.003) TCGA-CG-4438-01 6 51619630 51619630 T C PKHD1 Missense_Mutation p.K2917E 0.20 tolerated(0.14) benign(0.071) TCGA-CG-4438-01 6 70669903 70669903 C A COL19A1 Missense_Mutation p.H318N 0.17 tolerated(0.51) unknown(0) TCGA-CG-4438-01 6 7862613 7862613 C A BMP6 Missense_Mutation p.F362L 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-CG-4438-01 6 90425374 90425374 G A MDN1 Silent p.F2286F 0.12 TCGA-CG-4438-01 6 93969191 93969191 A T EPHA7 Missense_Mutation p.F602Y 0.36 tolerated(0.41) benign(0.143) TCGA-CG-4438-01 7 107434890 107434890 T A SLC26A3 Missense_Mutation p.E22V 0.33 tolerated(0.22) benign(0.045) TCGA-CG-4438-01 7 113558764 113558764 C T PPP1R3A Silent p.T96T 0.26 TCGA-CG-4438-01 7 137092659 137092659 G A DGKI Missense_Mutation p.T969I 0.05 tolerated(0.37) possibly_damaging(0.499) TCGA-CG-4438-01 7 4304904 4304904 A T SDK1 Missense_Mutation p.E2177V 0.12 deleterious(0.01) benign(0.104) TCGA-CG-4438-01 7 43547663 43547663 G C HECW1 Missense_Mutation p.V1267L 0.12 deleterious(0.03) benign(0.128) TCGA-CG-4438-01 7 45743282 45743282 C T ADCY1 Silent p.D885D 0.23 TCGA-CG-4438-01 7 47947794 47947794 C G PKD1L1 Missense_Mutation p.V428L 0.42 tolerated(0.06) possibly_damaging(0.527) TCGA-CG-4438-01 7 7680181 7680181 G A RPA3 5'UTR 0.69 TCGA-CG-4438-01 7 94181701 94181701 G C CASD1 Missense_Mutation p.E666Q 0.15 deleterious(0.02) possibly_damaging(0.873) TCGA-CG-4438-01 8 110478930 110478930 G A PKHD1L1 Missense_Mutation p.R2846H 0.25 deleterious(0) probably_damaging(0.997) TCGA-CG-4438-01 8 143960891 143960891 C A CYP11B1 Intron 0.20 TCGA-CG-4438-01 8 16973996 16973996 T C MICU3 Missense_Mutation p.S471P 0.62 deleterious(0.02) probably_damaging(0.917) TCGA-CG-4438-01 8 69050688 69050688 A C PREX2 Silent p.A1341A 0.16 TCGA-CG-4438-01 8 87060893 87060893 C G PSKH2 Missense_Mutation p.W319S 0.03 deleterious(0) probably_damaging(0.998) TCGA-CG-4438-01 9 109689843 109689843 G C ZNF462 Missense_Mutation p.R1217P 0.25 probably_damaging(0.997) TCGA-CG-4438-01 9 128725303 128725303 C T PBX3 Missense_Mutation p.R379C 0.18 deleterious_low_confidence(0.01) probably_damaging(0.953) TCGA-CG-4438-01 9 131396198 131396198 G A WDR34 Missense_Mutation p.T479I 0.57 tolerated(0.15) possibly_damaging(0.842) TCGA-CG-4438-01 9 32541411 32541411 G C TOPORS Missense_Mutation p.L1038V 0.12 deleterious_low_confidence(0.02) unknown(0) TCGA-CG-4438-01 9 90535880 90535880 C A SPATA31C1 RNA 0.57 TCGA-CG-4438-01 X 23697385 23697385 G A PRDX4 Missense_Mutation p.D194N 0.42 tolerated(0.07) benign(0.09) TCGA-CG-4438-01 X 70344686 70344686 G C MED12 Missense_Mutation p.D683H 0.17 possibly_damaging(0.863) TCGA-CG-4438-01 X 77243797 77243797 G C ATP7A Missense_Mutation p.K60N 0.19 tolerated(0.29) benign(0.158) TCGA-CG-4438-01 X 86069699 86069699 C T DACH2 Nonsense_Mutation p.Q516* 0.74 TCGA-CG-4440-01 10 102765299 102765299 C T LZTS2 Missense_Mutation p.R385W 0.14 deleterious(0) probably_damaging(0.997) TCGA-CG-4440-01 10 1058414 1058414 G T GTPBP4 Nonsense_Mutation p.E452* 0.22 TCGA-CG-4440-01 10 1405937 1405937 C T ADARB2 Silent p.S121S 0.52 TCGA-CG-4440-01 10 34671584 34671584 G A PARD3 Missense_Mutation p.S428L 0.25 tolerated(0.25) benign(0.003) TCGA-CG-4440-01 10 89653801 89653801 T C PTEN Silent p.I33I 0.26 TCGA-CG-4440-01 10 97174384 97174384 C T SORBS1 Missense_Mutation p.R226H 0.23 deleterious_low_confidence(0.01) benign(0.146) TCGA-CG-4440-01 11 100920727 100920729 CTC - PGR In_Frame_Del p.E807del 0.24 TCGA-CG-4440-01 11 118239372 118239372 T G UBE4A Missense_Mutation p.S50A 0.12 tolerated(0.08) benign(0.122) TCGA-CG-4440-01 11 121420786 121420786 G A SORL1 Silent p.R723R 0.28 TCGA-CG-4440-01 11 24750779 24750779 C T LUZP2 Missense_Mutation p.R43C 0.14 deleterious(0) possibly_damaging(0.742) TCGA-CG-4440-01 11 28349659 28349659 T G METTL15 Intron 0.11 TCGA-CG-4440-01 11 5322906 5322906 C A OR51B4 Missense_Mutation p.A91S 0.34 tolerated(1) benign(0.002) TCGA-CG-4440-01 11 55703769 55703769 C A OR5I1 Missense_Mutation p.L36F 0.16 deleterious(0.02) benign(0.356) TCGA-CG-4440-01 11 55703771 55703771 A T OR5I1 Missense_Mutation p.L36M 0.18 deleterious(0.05) benign(0.054) TCGA-CG-4440-01 11 5776554 5776554 A C OR52N4 Missense_Mutation p.K195T 0.05 tolerated(0.2) benign(0.299) TCGA-CG-4440-01 11 62298626 62298626 G C AHNAK Missense_Mutation p.S1088C 0.27 probably_damaging(0.967) TCGA-CG-4440-01 11 62677615 62677615 G A CHRM1 Missense_Mutation p.R320W 0.14 deleterious(0.01) possibly_damaging(0.748) TCGA-CG-4440-01 11 76507252 76507252 G A TSKU Missense_Mutation p.A198T 0.29 tolerated(0.46) benign(0.002) TCGA-CG-4440-01 11 88911920 88911920 T A TYR Missense_Mutation p.S267T 0.16 deleterious(0.03) probably_damaging(0.999) TCGA-CG-4440-01 11 89224395 89224395 C G NOX4 Missense_Mutation p.S7T 0.18 deleterious(0.02) benign(0.144) TCGA-CG-4440-01 12 107371268 107371268 T C MTERFD3 3'Flank 0.14 TCGA-CG-4440-01 12 108920075 108920075 G C SART3 Missense_Mutation p.P724R 0.52 tolerated(0.18) benign(0.374) TCGA-CG-4440-01 12 109523552 109523552 G A USP30 Missense_Mutation p.R457Q 0.14 deleterious(0) probably_damaging(1) TCGA-CG-4440-01 12 11461181 11461181 G T PRB4 Missense_Mutation p.P246T 0.30 deleterious_low_confidence(0) unknown(0) TCGA-CG-4440-01 12 130648388 130648388 C A FZD10 Missense_Mutation p.Q301K 0.16 tolerated(0.09) probably_damaging(0.988) TCGA-CG-4440-01 12 20874876 20874876 G A SLCO1C1 Missense_Mutation p.R305K 0.17 tolerated(0.8) benign(0.002) TCGA-CG-4440-01 12 41966380 41966380 T G PDZRN4 Missense_Mutation p.L600R 0.16 deleterious(0.01) possibly_damaging(0.86) TCGA-CG-4440-01 12 5154190 5154190 G A KCNA5 Missense_Mutation p.A293T 0.45 tolerated(0.58) benign(0.003) TCGA-CG-4440-01 12 66605310 66605310 G T IRAK3 Missense_Mutation p.G174V 0.10 deleterious(0) probably_damaging(0.999) TCGA-CG-4440-01 12 66605311 66605311 A T IRAK3 Silent p.G174G 0.11 TCGA-CG-4440-01 12 7286186 7286186 C T CLSTN3 Missense_Mutation p.R69W 0.13 deleterious(0) probably_damaging(0.973) TCGA-CG-4440-01 12 78582033 78582033 A C NAV3 Missense_Mutation p.Q1910H 0.14 tolerated(0.12) possibly_damaging(0.601) TCGA-CG-4440-01 12 8688703 8688703 A T CLEC4E Silent p.P157P 0.08 TCGA-CG-4440-01 13 41705329 41767075 13:41705329-41767075 - KBTBD6 large deletion 0.32 TCGA-CG-4440-01 13 46616346 46616346 T C ZC3H13 Missense_Mutation p.T98A 0.43 unknown(0) TCGA-CG-4440-01 13 52330495 52330495 G A WDFY2 Missense_Mutation p.V321I 0.46 tolerated(0.2) probably_damaging(0.993) TCGA-CG-4440-01 13 93879869 93879869 G A GPC6 Missense_Mutation p.G54R 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-CG-4440-01 14 105405265 105405265 G C AHNAK2 Missense_Mutation p.T5508R 0.11 possibly_damaging(0.779) TCGA-CG-4440-01 14 105410061 105410061 C A AHNAK2 Missense_Mutation p.K3909N 0.30 possibly_damaging(0.71) TCGA-CG-4440-01 14 20404608 20404608 T G OR4K1 Silent p.P261P 0.08 TCGA-CG-4440-01 14 39651202 39651205 TGTT - PNN 3'UTR 0.56 TCGA-CG-4440-01 14 58820474 58820474 G A ARID4A Missense_Mutation p.R585Q 0.20 deleterious(0.04) probably_damaging(0.999) TCGA-CG-4440-01 14 72139213 72139213 G A SIPA1L1 Missense_Mutation p.R993H 0.29 deleterious(0) probably_damaging(0.991) TCGA-CG-4440-01 14 95081025 95081025 G A SERPINA3 Missense_Mutation p.A83T 0.12 deleterious(0) possibly_damaging(0.825) TCGA-CG-4440-01 15 48748847 48748847 C A FBN1 Missense_Mutation p.L1803F 0.18 probably_damaging(1) TCGA-CG-4440-01 15 48773939 48773939 T G FBN1 Missense_Mutation p.S1293R 0.17 benign(0.324) TCGA-CG-4440-01 15 85681096 85681096 G A PDE8A Missense_Mutation p.E818K 0.44 deleterious(0.03) benign(0.05) TCGA-CG-4440-01 16 15221955 15221955 G A RP11-1186N24.5 RNA 0.13 TCGA-CG-4440-01 16 3338488 3338488 C G ZNF263 Silent p.T268T 0.15 TCGA-CG-4440-01 17 29550553 29550553 A T NF1 Missense_Mutation p.I605F 0.12 tolerated(0.09) probably_damaging(0.921) TCGA-CG-4440-01 17 29632425 29632425 C T EVI2B Missense_Mutation p.G68E 0.14 tolerated(0.39) benign(0.062) TCGA-CG-4440-01 17 29632469 29632469 C T EVI2B Silent p.G53G 0.12 TCGA-CG-4440-01 17 29632543 29632543 C T EVI2B Missense_Mutation p.E29K 0.09 tolerated(0.11) benign(0) TCGA-CG-4440-01 17 29632556 29632556 C A EVI2B Missense_Mutation p.E24D 0.08 deleterious(0.02) possibly_damaging(0.801) TCGA-CG-4440-01 17 33690427 33690427 G A SLFN11 Missense_Mutation p.R134C 0.44 tolerated(0.24) benign(0.001) TCGA-CG-4440-01 17 42226115 42226115 C A C17orf53 Missense_Mutation p.P315H 0.17 tolerated(0.06) benign(0.075) TCGA-CG-4440-01 17 4439624 4439624 G A SPNS2 Missense_Mutation p.A504T 0.20 deleterious(0) probably_damaging(0.973) TCGA-CG-4440-01 17 46128984 46128984 C T NFE2L1 Silent p.T168T 0.32 TCGA-CG-4440-01 17 72916295 72916295 G A USH1G Silent p.G212G 0.57 TCGA-CG-4440-01 17 7577558 7577558 G - TP53 Frame_Shift_Del p.C242Afs*5 0.34 TCGA-CG-4440-01 19 13004403 13004403 C T GCDH Silent p.L147L 0.19 TCGA-CG-4440-01 19 14762009 14762009 T G EMR3 Missense_Mutation p.E195D 0.57 tolerated(0.35) possibly_damaging(0.762) TCGA-CG-4440-01 19 19381866 19381866 G A TM6SF2 Missense_Mutation p.S55F 0.40 tolerated(0.06) possibly_damaging(0.83) TCGA-CG-4440-01 19 46443906 46443906 C T NOVA2 Missense_Mutation p.A232T 0.19 deleterious(0) unknown(0) TCGA-CG-4440-01 19 46543157 46543157 A C IGFL4 Missense_Mutation p.L123R 0.21 deleterious_low_confidence(0) probably_damaging(0.955) TCGA-CG-4440-01 19 49552197 49552197 G A CGB8 5'UTR 0.42 TCGA-CG-4440-01 19 50138782 50138782 G A RRAS 3'UTR 0.24 TCGA-CG-4440-01 19 53367144 53367144 G C CTD-2331H12.5 5'Flank 0.21 TCGA-CG-4440-01 19 54659439 54659439 C G LENG1 3'UTR 0.11 TCGA-CG-4440-01 19 56104081 56104081 C T FIZ1 Missense_Mutation p.R409H 0.14 tolerated(0.18) possibly_damaging(0.809) TCGA-CG-4440-01 19 56465888 56465888 C T NLRP8 Missense_Mutation p.S155L 0.21 tolerated(0.77) benign(0) TCGA-CG-4440-01 19 58421206 58421206 A T ZNF417 Missense_Mutation p.F147Y 0.07 tolerated(0.12) benign(0.065) TCGA-CG-4440-01 19 58571460 58571460 C T ZNF135 Intron 0.16 TCGA-CG-4440-01 19 8841852 8841852 C G OR2Z1 Silent p.L154L 0.19 TCGA-CG-4440-01 19 9237253 9237253 G A OR7G3 Missense_Mutation p.A125V 0.30 deleterious(0) probably_damaging(0.991) TCGA-CG-4440-01 1 120050104 120050104 C T HSD3B1 Missense_Mutation p.T2M 0.19 tolerated(0.07) benign(0.006) TCGA-CG-4440-01 1 12395817 12395817 G T VPS13D Missense_Mutation p.K2828N 0.15 benign(0.001) TCGA-CG-4440-01 1 152287870 152287870 T - FLG Frame_Shift_Del p.D22Ifs*7 0.12 TCGA-CG-4440-01 1 153661563 153661563 A G NPR1 Missense_Mutation p.Q851R 0.11 deleterious(0) probably_damaging(0.917) TCGA-CG-4440-01 1 154294533 154294533 C T AQP10 Missense_Mutation p.S77L 0.12 deleterious(0) probably_damaging(0.969) TCGA-CG-4440-01 1 158263404 158263404 C G CD1C 3'UTR 0.35 TCGA-CG-4440-01 1 161680576 161680576 G A FCRLA Missense_Mutation p.E59K 0.32 tolerated(0.14) benign(0.076) TCGA-CG-4440-01 1 169816931 169816931 C T C1orf112 Missense_Mutation p.P682L 0.11 deleterious(0) possibly_damaging(0.856) TCGA-CG-4440-01 1 19208375 19208375 C T ALDH4A1 Missense_Mutation p.V229M 0.16 deleterious(0) probably_damaging(0.998) TCGA-CG-4440-01 1 23237000 23237000 T G EPHB2 Missense_Mutation p.I877M 0.25 deleterious(0) probably_damaging(0.961) TCGA-CG-4440-01 1 240370099 240370099 G A FMN2 Missense_Mutation p.E663K 0.09 unknown(0) TCGA-CG-4440-01 1 247024375 247024375 C T AHCTF1 Missense_Mutation p.E1329K 0.41 deleterious(0) probably_damaging(0.928) TCGA-CG-4440-01 1 247875864 247875864 T G OR6F1 Missense_Mutation p.N65T 0.33 deleterious(0) probably_damaging(0.91) TCGA-CG-4440-01 1 36762331 36762332 - A THRAP3 Frame_Shift_Ins p.T757Nfs*6 0.13 TCGA-CG-4440-01 1 53108542 53108542 G A FAM159A Missense_Mutation p.A64T 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-CG-4440-01 20 36767991 36767991 C T TGM2 Missense_Mutation p.D389N 0.13 deleterious(0) probably_damaging(0.994) TCGA-CG-4440-01 20 51872284 51872284 C A TSHZ2 Missense_Mutation p.Q763K 0.28 deleterious(0) probably_damaging(0.977) TCGA-CG-4440-01 20 58547035 58547035 T C CDH26 Missense_Mutation p.Y84H 0.35 tolerated(0.53) benign(0.001) TCGA-CG-4440-01 20 60899589 60899589 G A LAMA5 Missense_Mutation p.R1851W 0.32 possibly_damaging(0.573) TCGA-CG-4440-01 21 41561117 41561117 C A DSCAM Missense_Mutation p.G802V 0.24 deleterious(0) probably_damaging(0.982) TCGA-CG-4440-01 21 43543199 43543199 G A UMODL1 Missense_Mutation p.S1157N 0.13 deleterious(0.01) possibly_damaging(0.636) TCGA-CG-4440-01 22 29456825 29456825 T G C22orf31 Missense_Mutation p.I4L 0.21 deleterious(0.05) benign(0.006) TCGA-CG-4440-01 22 32797882 32797882 C T RTCB Missense_Mutation p.G117R 0.30 deleterious(0) probably_damaging(1) TCGA-CG-4440-01 22 32914313 32914313 G A SYN3 Missense_Mutation p.R443C 0.18 tolerated(0.06) unknown(0) TCGA-CG-4440-01 2 128918778 128918778 A C UGGT1 Missense_Mutation p.I921L 0.17 deleterious(0.01) benign(0.003) TCGA-CG-4440-01 2 133540771 133540771 C T NCKAP5 Missense_Mutation p.E1205K 0.42 tolerated(0.2) benign(0.019) TCGA-CG-4440-01 2 153573876 153573876 G T PRPF40A Silent p.G26G 0.18 TCGA-CG-4440-01 2 159537240 159537240 G A PKP4 3'UTR 0.18 TCGA-CG-4440-01 2 162751304 162751304 G C SLC4A10 Missense_Mutation p.R437P 0.41 deleterious(0) probably_damaging(0.998) TCGA-CG-4440-01 2 179470099 179470099 T C TTN Intron 0.17 TCGA-CG-4440-01 2 20133220 20133220 G A WDR35 Missense_Mutation p.A878V 0.44 tolerated(0.08) probably_damaging(0.993) TCGA-CG-4440-01 2 220167050 220167050 G A PTPRN Missense_Mutation p.S268L 0.11 tolerated(0.24) benign(0.003) TCGA-CG-4440-01 2 234676494 234676494 G A UGT1A10 Splice_Site p.X330_splice 0.16 TCGA-CG-4440-01 2 237489447 237489447 C T ACKR3 Silent p.G113G 0.10 TCGA-CG-4440-01 2 30985951 30985951 C T CAPN13 Silent p.E257E 0.20 TCGA-CG-4440-01 3 101451490 101451490 G A CEP97 Silent p.Q240Q 0.13 TCGA-CG-4440-01 3 109049629 109049629 T C DPPA4 Missense_Mutation p.I141V 0.16 tolerated(0.34) benign(0.119) TCGA-CG-4440-01 3 113804674 113804674 T C QTRTD1 Missense_Mutation p.F403L 0.31 deleterious(0) probably_damaging(0.919) TCGA-CG-4440-01 3 119720972 119720972 C A GSK3B Missense_Mutation p.G68V 0.28 deleterious(0) probably_damaging(1) TCGA-CG-4440-01 3 121238895 121238895 C G POLQ Missense_Mutation p.A431P 0.27 deleterious(0) probably_damaging(0.974) TCGA-CG-4440-01 3 122864408 122864408 A G PDIA5 Missense_Mutation p.K317R 0.31 tolerated(0.12) benign(0.003) TCGA-CG-4440-01 3 129226544 129226544 T G IFT122 Missense_Mutation p.F993C 0.19 deleterious(0) probably_damaging(0.996) TCGA-CG-4440-01 3 170013719 170013719 C A PRKCI Missense_Mutation p.R480S 0.10 tolerated(0.2) benign(0.255) TCGA-CG-4440-01 3 173998882 173998882 T A NLGN1 Missense_Mutation p.L754H 0.19 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-CG-4440-01 3 180397202 180397202 G T CCDC39 5'UTR 0.28 TCGA-CG-4440-01 3 38207426 38207426 A C OXSR1 Missense_Mutation p.Q20P 0.49 tolerated(0.35) benign(0.009) TCGA-CG-4440-01 3 38797307 38797307 C T SCN10A Missense_Mutation p.R478H 0.57 tolerated(0.1) benign(0.001) TCGA-CG-4440-01 4 122740665 122740665 C T CCNA2 Silent p.K288K 0.20 TCGA-CG-4440-01 4 124323037 124323037 G T SPRY1 Silent p.L97L 0.55 TCGA-CG-4440-01 4 185637777 185637777 T G CENPU Missense_Mutation p.K131T 0.31 deleterious(0.02) probably_damaging(0.937) TCGA-CG-4440-01 4 57189674 57189674 C T KIAA1211 Missense_Mutation p.R1107W 0.55 deleterious(0) possibly_damaging(0.835) TCGA-CG-4440-01 4 62758415 62758415 A T LPHN3 Missense_Mutation p.T440S 0.14 tolerated(0.33) benign(0.002) TCGA-CG-4440-01 4 66189849 66189849 C T EPHA5 Missense_Mutation p.G1033R 0.04 tolerated(0.57) benign(0.436) TCGA-CG-4440-01 4 72631275 72631275 C T GC Missense_Mutation p.G135D 0.14 deleterious(0) probably_damaging(0.996) TCGA-CG-4440-01 4 73013572 73013573 - T NPFFR2 3'UTR 0.26 TCGA-CG-4440-01 4 79421075 79421075 G A FRAS1 Missense_Mutation p.G3106S 0.32 probably_damaging(0.937) TCGA-CG-4440-01 5 140603363 140603363 T C PCDHB14 Missense_Mutation p.C96R 0.31 deleterious_low_confidence(0) probably_damaging(1) TCGA-CG-4440-01 5 140750067 140750067 G A PCDHGB3 Missense_Mutation p.A36T 0.17 tolerated(0.13) benign(0.03) TCGA-CG-4440-01 5 171765315 171765315 A G SH3PXD2B 3'UTR 0.29 TCGA-CG-4440-01 5 34939087 34939087 G C DNAJC21 Missense_Mutation p.E290Q 0.26 tolerated(0.14) benign(0.049) TCGA-CG-4440-01 5 71634515 71634515 C G PTCD2 Missense_Mutation p.L236V 0.27 tolerated(0.1) benign(0.335) TCGA-CG-4440-01 5 96430398 96430398 C A LIX1 3'UTR 0.12 TCGA-CG-4440-01 6 152712629 152712629 C T SYNE1 Missense_Mutation p.R2596H 0.14 benign(0.119) TCGA-CG-4440-01 6 46656928 46656928 A G TDRD6 Missense_Mutation p.S355G 0.45 deleterious(0.05) probably_damaging(0.953) TCGA-CG-4440-01 6 74063727 74063727 G A DPPA5 Silent p.I47I 0.43 TCGA-CG-4440-01 7 121679509 121679509 G T PTPRZ1 Missense_Mutation p.R1835I 0.11 deleterious(0.01) probably_damaging(0.989) TCGA-CG-4440-01 7 142991371 142991371 A G CASP2 Missense_Mutation p.Q175R 0.07 tolerated(0.59) benign(0) TCGA-CG-4440-01 7 154564623 154564623 G T DPP6 Missense_Mutation p.E369D 0.12 deleterious(0.01) benign(0.444) TCGA-CG-4440-01 7 30058688 30058688 A C FKBP14 Missense_Mutation p.I134S 0.14 deleterious(0) probably_damaging(0.992) TCGA-CG-4440-01 7 31746910 31746910 T C PPP1R17 3'UTR 0.30 TCGA-CG-4440-01 7 43447231 43447231 G T HECW1 Missense_Mutation p.Q234H 0.09 tolerated(0.19) probably_damaging(1) TCGA-CG-4440-01 7 47408817 47408817 C T TNS3 Missense_Mutation p.D476N 0.33 deleterious(0) probably_damaging(1) TCGA-CG-4440-01 7 716895 716895 G C PRKAR1B Silent p.L137L 0.27 TCGA-CG-4440-01 7 82584756 82584756 G A PCLO Missense_Mutation p.P1838L 0.13 unknown(0) TCGA-CG-4440-01 7 88847482 88847482 A C ZNF804B Missense_Mutation p.K41T 0.41 deleterious(0) probably_damaging(0.997) TCGA-CG-4440-01 8 128753282 128753282 C G MYC 3'UTR 0.90 TCGA-CG-4440-01 8 136594304 136594304 T G KHDRBS3 Silent p.T265T 0.26 TCGA-CG-4440-01 8 144995534 144995534 C T PLEC Missense_Mutation p.V2956M 0.37 possibly_damaging(0.782) TCGA-CG-4440-01 8 32621861 32621861 G T NRG1 Nonsense_Mutation p.E627* 0.21 TCGA-CG-4440-01 9 137619115 137619115 G A COL5A1 Missense_Mutation p.D220N 0.12 probably_damaging(0.998) TCGA-CG-4440-01 9 34401082 34401082 G A FAM219A Silent p.D146D 0.18 TCGA-CG-4440-01 X 118223450 118223450 A G KIAA1210 Silent p.N581N 0.48 TCGA-CG-4440-01 X 138880884 138880884 A G ATP11C Silent p.N246N 0.17 TCGA-CG-4440-01 X 48542701 48542701 C T WAS Silent p.Y54Y 0.30 TCGA-CG-4440-01 X 54020053 54020053 C G PHF8 Missense_Mutation p.G572A 0.42 tolerated(0.55) benign(0.002) TCGA-CG-4441-01 10 102304792 102304792 C T HIF1AN Missense_Mutation p.P221L 0.28 deleterious(0) probably_damaging(1) TCGA-CG-4441-01 10 102762419 102762419 C T LZTS2 Missense_Mutation p.P42S 0.26 tolerated(0.88) benign(0) TCGA-CG-4441-01 10 112341745 112341745 G T SMC3 Missense_Mutation p.E204D 0.36 tolerated(0.07) possibly_damaging(0.449) TCGA-CG-4441-01 10 75612948 75612948 A G CAMK2G Splice_Site p.X92_splice 0.08 TCGA-CG-4441-01 11 102100727 102100727 C T YAP1 3'UTR 0.21 TCGA-CG-4441-01 11 122817487 122817487 G T C11orf63 Missense_Mutation p.R639I 0.29 deleterious(0.04) benign(0.167) TCGA-CG-4441-01 11 123813599 123813599 A G OR6T1 Missense_Mutation p.L316P 0.34 tolerated(0.36) benign(0.205) TCGA-CG-4441-01 11 22360124 22360124 G C SLC17A6 Silent p.G15G 0.32 TCGA-CG-4441-01 11 3423086 3423086 G A TSSC2 RNA 0.33 TCGA-CG-4441-01 11 45880279 45880279 C T CRY2 Intron 0.41 TCGA-CG-4441-01 11 5461820 5461820 A C OR51I1 Missense_Mutation p.F309V 0.31 deleterious(0.01) benign(0.075) TCGA-CG-4441-01 11 55587672 55587672 T G OR5D18 Silent p.S189S 0.37 TCGA-CG-4441-01 11 6416887 6416887 G C APBB1 Silent p.T668T 0.19 TCGA-CG-4441-01 11 6452560 6452560 C T HPX Missense_Mutation p.G424S 0.25 tolerated(0.46) benign(0.112) TCGA-CG-4441-01 11 67814973 67814973 G A TCIRG1 Missense_Mutation p.M413I 0.36 deleterious(0) benign(0.4) TCGA-CG-4441-01 12 124824647 124824647 G A NCOR2 Silent p.T1864T 0.18 TCGA-CG-4441-01 12 129566427 129566427 T G TMEM132D Silent p.S600S 0.23 TCGA-CG-4441-01 12 48183352 48183352 C T HDAC7 Missense_Mutation p.A701T 0.28 deleterious(0) probably_damaging(0.998) TCGA-CG-4441-01 12 54913027 54913027 C A NCKAP1L Silent p.A512A 0.09 TCGA-CG-4441-01 12 78513023 78513023 C T NAV3 Missense_Mutation p.T1016I 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-CG-4441-01 13 101735457 101735457 A G NALCN Silent p.L1226L 0.30 TCGA-CG-4441-01 13 106142294 106142294 G C DAOA Missense_Mutation p.R109T 0.20 tolerated_low_confidence(0.28) benign(0.402) TCGA-CG-4441-01 13 23912948 23912948 A G SACS Silent p.S1689S 0.30 TCGA-CG-4441-01 14 101348302 101348302 C T RTL1 Missense_Mutation p.E942K 0.26 tolerated(0.12) probably_damaging(0.996) TCGA-CG-4441-01 14 20215736 20215736 A C OR4Q3 Missense_Mutation p.Q50H 0.03 tolerated(0.53) benign(0.116) TCGA-CG-4441-01 14 92909097 92909097 C T SLC24A4 Silent p.I173I 0.19 TCGA-CG-4441-01 14 94044282 94044282 G A UNC79 Missense_Mutation p.R592H 0.30 tolerated(0.07) benign(0.003) TCGA-CG-4441-01 15 101169958 101169958 C T ASB7 Silent p.I176I 0.34 TCGA-CG-4441-01 15 102358889 102358889 C T OR4F15 Missense_Mutation p.P167L 0.27 deleterious_low_confidence(0) possibly_damaging(0.521) TCGA-CG-4441-01 15 40915077 40915077 T C CASC5 Missense_Mutation p.M898T 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-CG-4441-01 15 43438759 43438759 C T TMEM62 Missense_Mutation p.S182L 0.32 deleterious(0) probably_damaging(0.983) TCGA-CG-4441-01 15 86122866 86122866 G A AKAP13 Missense_Mutation p.V523I 0.14 tolerated_low_confidence(0.1) benign(0.221) TCGA-CG-4441-01 15 89389036 89389036 G A ACAN Missense_Mutation p.G451D 0.33 tolerated(0.4) unknown(0) TCGA-CG-4441-01 16 16215891 16215891 G A ABCC1 Silent p.P1150P 0.30 TCGA-CG-4441-01 16 70926295 70926295 T G HYDIN Missense_Mutation p.K3129T 0.14 possibly_damaging(0.859) TCGA-CG-4441-01 17 20224948 20224948 G A AC004702.2 Intron 0.30 TCGA-CG-4441-01 17 72938070 72938070 C T OTOP3 Missense_Mutation p.R189C 0.24 deleterious(0.01) benign(0.394) TCGA-CG-4441-01 17 73499210 73499210 C T CASKIN2 Missense_Mutation p.E649K 0.41 deleterious(0) probably_damaging(0.959) TCGA-CG-4441-01 17 73732147 73732147 C A ITGB4 Missense_Mutation p.S558Y 0.19 tolerated(1) possibly_damaging(0.781) TCGA-CG-4441-01 17 7611470 7611470 G A EFNB3 Missense_Mutation p.R106H 0.30 deleterious(0) probably_damaging(0.945) TCGA-CG-4441-01 17 79219698 79219698 G A SLC38A10 Silent p.D1006D 0.21 TCGA-CG-4441-01 17 79429767 79429767 G A RP11-1055B8.7 Missense_Mutation p.R2462Q 0.20 possibly_damaging(0.814) TCGA-CG-4441-01 18 21057016 21057017 - CAGTGAG RIOK3 Frame_Shift_Ins p.Y410Qfs*2 0.16 TCGA-CG-4441-01 18 25593761 25593761 G T CDH2 Silent p.L95L 0.05 TCGA-CG-4441-01 18 580610 580610 G A CETN1 Missense_Mutation p.E68K 0.16 deleterious(0.01) probably_damaging(0.977) TCGA-CG-4441-01 18 65178313 65178313 T G DSEL Missense_Mutation p.N1188T 0.29 tolerated(0.21) benign(0.108) TCGA-CG-4441-01 19 3533300 3533300 G T FZR1 Silent p.T417T 0.29 TCGA-CG-4441-01 19 36050871 36050871 C T ATP4A Missense_Mutation p.E298K 0.18 deleterious(0) probably_damaging(0.996) TCGA-CG-4441-01 19 39592115 39592115 G A PAPL Missense_Mutation p.G351S 0.42 deleterious(0.05) probably_damaging(0.991) TCGA-CG-4441-01 19 51671348 51671348 C T CTD-3187F8.14 Intron 0.28 TCGA-CG-4441-01 19 53741786 53741786 T G ZNF677 Missense_Mutation p.K65T 0.21 deleterious(0.03) benign(0.346) TCGA-CG-4441-01 19 58490018 58490018 T C ZNF606 Missense_Mutation p.E677G 0.30 deleterious(0.03) probably_damaging(0.997) TCGA-CG-4441-01 19 879980 879980 G A MED16 Missense_Mutation p.S437L 0.27 deleterious(0) possibly_damaging(0.651) TCGA-CG-4441-01 19 9764240 9764240 G A ZNF562 Silent p.H222H 0.30 TCGA-CG-4441-01 1 13001286 13001286 T G PRAMEF6 Missense_Mutation p.T133P 0.25 tolerated(0.28) benign(0.004) TCGA-CG-4441-01 1 158736261 158736261 A C OR6N1 Missense_Mutation p.L71R 0.32 deleterious(0) probably_damaging(0.95) TCGA-CG-4441-01 1 160097392 160097392 C T ATP1A2 Missense_Mutation p.R267C 0.29 deleterious(0) probably_damaging(0.999) TCGA-CG-4441-01 1 162344042 162344042 G A C1orf111 Silent p.T194T 0.29 TCGA-CG-4441-01 1 171154909 171154909 G A FMO2 Silent p.K19K 0.09 TCGA-CG-4441-01 1 17349180 17349180 G A SDHB Missense_Mutation p.R230C 0.33 deleterious(0) probably_damaging(0.999) TCGA-CG-4441-01 1 177245501 177245501 G A BRINP2 Missense_Mutation p.A315T 0.25 tolerated(0.39) benign(0.002) TCGA-CG-4441-01 1 196716376 196716376 G A CFH Missense_Mutation p.R1210H 0.32 tolerated(0.14) benign(0.153) TCGA-CG-4441-01 1 248263095 248263095 T A OR2L13 Missense_Mutation p.C140S 0.32 tolerated(0.1) probably_damaging(1) TCGA-CG-4441-01 1 248457972 248457972 C T OR2T12 Silent p.L303L 0.34 TCGA-CG-4441-01 1 37356689 37356689 A C GRIK3 Missense_Mutation p.F42V 0.28 deleterious(0) probably_damaging(1) TCGA-CG-4441-01 1 38323055 38323055 A C MTF1 Silent p.G92G 0.18 TCGA-CG-4441-01 1 46662434 46662439 CTGCGA - POMGNT1 In_Frame_Del p.R107_S108del 0.23 TCGA-CG-4441-01 1 55337221 55337221 G A DHCR24 Silent p.A226A 0.10 TCGA-CG-4441-01 1 57420479 57420479 A C C8B Missense_Mutation p.L138R 0.05 deleterious(0) probably_damaging(0.996) TCGA-CG-4441-01 1 75037488 75037488 G T C1orf173 Nonsense_Mutation p.C1302* 0.04 TCGA-CG-4441-01 1 7980916 7980916 T G TNFRSF9 Missense_Mutation p.E249D 0.31 deleterious(0) probably_damaging(0.998) TCGA-CG-4441-01 1 91859732 91859732 G T HFM1 Missense_Mutation p.P138T 0.28 tolerated_low_confidence(0.09) benign(0.011) TCGA-CG-4441-01 20 16352381 16352383 CTT - KIF16B In_Frame_Del p.E1125del 0.16 TCGA-CG-4441-01 20 24993556 24993556 G A ACSS1 Silent p.D533D 0.24 TCGA-CG-4441-01 20 41420056 41420056 G T PTPRT Missense_Mutation p.H89N 0.28 deleterious(0.04) possibly_damaging(0.604) TCGA-CG-4441-01 20 44002629 44002629 G A TP53TG5 Missense_Mutation p.A264V 0.21 tolerated(0.57) benign(0.01) TCGA-CG-4441-01 20 62165514 62165514 G A PTK6 Silent p.P169P 0.38 TCGA-CG-4441-01 21 28338365 28338365 C T ADAMTS5 Missense_Mutation p.A116T 0.16 tolerated(0.6) benign(0.006) TCGA-CG-4441-01 21 38612909 38612909 C A DSCR3 Missense_Mutation p.S30I 0.38 deleterious(0.01) possibly_damaging(0.544) TCGA-CG-4441-01 21 45833814 45833814 C T TRPM2 Silent p.T1001T 0.12 TCGA-CG-4441-01 22 31851888 31851888 C T EIF4ENIF1 Missense_Mutation p.R350Q 0.29 deleterious(0.04) possibly_damaging(0.521) TCGA-CG-4441-01 22 41572924 41572924 C T EP300 Missense_Mutation p.R1737C 0.28 probably_damaging(0.955) TCGA-CG-4441-01 22 50555597 50555597 G A MOV10L1 Missense_Mutation p.R424H 0.28 tolerated(0.43) benign(0.023) TCGA-CG-4441-01 2 160245918 160245918 C G BAZ2B Missense_Mutation p.E1052Q 0.26 probably_damaging(0.998) TCGA-CG-4441-01 2 167301492 167301492 T G SCN7A Missense_Mutation p.K469T 0.25 deleterious(0.01) possibly_damaging(0.851) TCGA-CG-4441-01 2 179594026 179594026 A C TTN Missense_Mutation p.V6286G 0.22 TCGA-CG-4441-01 2 242573185 242573185 C T THAP4 Silent p.P129P 0.40 TCGA-CG-4441-01 2 26350094 26350094 G A RAB10 Missense_Mutation p.G137R 0.10 deleterious(0) probably_damaging(0.997) TCGA-CG-4441-01 2 71160232 71160232 T A VAX2 Missense_Mutation p.D257E 0.18 tolerated(1) benign(0.077) TCGA-CG-4441-01 3 113440597 113440597 T C NAA50 3'UTR 0.22 TCGA-CG-4441-01 3 141011729 141011729 C T ACPL2 Silent p.Y375Y 0.35 TCGA-CG-4441-01 3 174814828 174814828 C A NAALADL2 Missense_Mutation p.Q98K 0.24 deleterious(0) possibly_damaging(0.783) TCGA-CG-4441-01 3 2908444 2908444 T A CNTN4 Missense_Mutation p.Y155N 0.28 deleterious(0.03) probably_damaging(0.998) TCGA-CG-4441-01 3 35758839 35758839 C T ARPP21 Nonsense_Mutation p.Q295* 0.11 TCGA-CG-4441-01 3 46307574 46307574 C T CCR3 Missense_Mutation p.R330W 0.38 deleterious(0) benign(0.316) TCGA-CG-4441-01 3 49694711 49694711 C T BSN Silent p.P2574P 0.30 TCGA-CG-4441-01 3 9868870 9868870 G A TTLL3 Missense_Mutation p.R498H 0.32 tolerated(0.1) benign(0.071) TCGA-CG-4441-01 4 166418828 166418828 T A CPE 3'UTR 0.23 TCGA-CG-4441-01 4 166924594 166924594 C G TLL1 Missense_Mutation p.I228M 0.28 deleterious(0) probably_damaging(0.985) TCGA-CG-4441-01 4 187516942 187516942 G A FAT1 Missense_Mutation p.P4347S 0.26 benign(0.035) TCGA-CG-4441-01 4 20535276 20535276 G A SLIT2 Silent p.T590T 0.14 TCGA-CG-4441-01 4 3318625 3318625 C T RGS12 Missense_Mutation p.T243M 0.34 deleterious(0) probably_damaging(0.939) TCGA-CG-4441-01 4 87610307 87610307 A C PTPN13 Missense_Mutation p.K170N 0.32 deleterious(0) probably_damaging(0.987) TCGA-CG-4441-01 5 131553527 131553527 G T P4HA2 Missense_Mutation p.L33M 0.27 tolerated(0.07) probably_damaging(1) TCGA-CG-4441-01 5 132203255 132203255 C G UQCRQ Missense_Mutation p.A77G 0.35 deleterious(0.05) benign(0.297) TCGA-CG-4441-01 5 13786317 13786317 A G DNAH5 Missense_Mutation p.F2931L 0.20 benign(0.418) TCGA-CG-4441-01 5 140166387 140166387 C T PCDHA1 Missense_Mutation p.T171M 0.31 deleterious_low_confidence(0.02) benign(0.055) TCGA-CG-4441-01 5 140517197 140517197 C T PCDHB5 Silent p.P727P 0.31 TCGA-CG-4441-01 5 140616472 140616472 G C PCDHB18 RNA 0.23 TCGA-CG-4441-01 5 140763523 140763523 A G PCDHGA7 Missense_Mutation p.S353G 0.05 deleterious_low_confidence(0.04) benign(0.049) TCGA-CG-4441-01 5 140799480 140799481 - G PCDHGB7 Frame_Shift_Ins p.A686Gfs*2 0.18 TCGA-CG-4441-01 5 38496666 38496667 - T LIFR Frame_Shift_Ins p.I568Nfs*12 0.28 TCGA-CG-4441-01 5 55204248 55204248 G A IL31RA Intron 0.31 TCGA-CG-4441-01 5 9629933 9629933 A C TAS2R1 Missense_Mutation p.F71C 0.22 tolerated(0.12) benign(0.052) TCGA-CG-4441-01 6 119345242 119345242 C T FAM184A Missense_Mutation p.R299Q 0.26 tolerated(1) benign(0.056) TCGA-CG-4441-01 6 143081659 143081659 G A HIVEP2 Silent p.D1922D 0.14 TCGA-CG-4441-01 6 158919781 158919781 G A TULP4 Missense_Mutation p.D651N 0.30 deleterious_low_confidence(0.02) benign(0.017) TCGA-CG-4441-01 6 44270562 44270562 C T AARS2 Missense_Mutation p.V781I 0.23 tolerated(0.23) benign(0.01) TCGA-CG-4441-01 6 74104733 74104733 G C DDX43 Missense_Mutation p.L35F 0.31 tolerated_low_confidence(0.1) benign(0.068) TCGA-CG-4441-01 7 117432148 117432148 C T CTTNBP2 Missense_Mutation p.A368T 0.31 tolerated(0.15) benign(0.001) TCGA-CG-4441-01 7 143633227 143633227 G A OR2F2 Nonsense_Mutation p.W301* 0.26 TCGA-CG-4441-01 7 2770956 2770956 G A GNA12 Silent p.F335F 0.40 TCGA-CG-4441-01 7 4900190 4900190 T C PAPOLB Missense_Mutation p.N417D 0.30 deleterious(0) probably_damaging(0.999) TCGA-CG-4441-01 7 5642914 5642914 G A FSCN1 Missense_Mutation p.E287K 0.22 deleterious(0.01) probably_damaging(0.997) TCGA-CG-4441-01 7 64649422 64649422 C T INTS4L1 RNA 0.26 TCGA-CG-4441-01 7 99015077 99015077 A G BUD31 Silent p.E81E 0.09 TCGA-CG-4441-01 7 99694968 99694968 G T MCM7 Missense_Mutation p.A386D 0.21 deleterious(0) probably_damaging(1) TCGA-CG-4441-01 8 48817430 48817430 A G PRKDC Missense_Mutation p.L1014S 0.21 possibly_damaging(0.71) TCGA-CG-4441-01 8 57025798 57025798 C A MOS Silent p.P248P 0.22 TCGA-CG-4441-01 8 99118518 99118518 C T HRSP12 Missense_Mutation p.G70S 0.05 deleterious(0.03) benign(0.178) TCGA-CG-4441-01 9 131117991 131117991 C T SLC27A4 Missense_Mutation p.R564C 0.32 tolerated(0.06) benign(0.258) TCGA-CG-4441-01 9 136272968 136272968 A C REXO4 Missense_Mutation p.I371S 0.44 deleterious(0) possibly_damaging(0.883) TCGA-CG-4441-01 9 136532044 136532044 C T SARDH Intron 0.50 TCGA-CG-4441-01 9 136907002 136907002 C T BRD3 Silent p.A429A 0.36 TCGA-CG-4441-01 9 137687154 137687154 G A COL5A1 Missense_Mutation p.G931D 0.08 unknown(0) TCGA-CG-4441-01 9 84562580 84562580 T G RP11-383M4.6 Intron 0.06 TCGA-CG-4441-01 X 100871324 100871324 C T ARMCX6 Missense_Mutation p.R96Q 0.74 tolerated(0.08) possibly_damaging(0.889) TCGA-CG-4441-01 X 101139163 101139163 A C ZMAT1 Silent p.T412T 0.41 TCGA-CG-4441-01 X 125298907 125298907 G A DCAF12L2 Missense_Mutation p.P334L 0.65 tolerated(0.58) benign(0.003) TCGA-CG-4441-01 X 299398 299398 C T PPP2R3B Silent p.A506A 0.11 TCGA-CG-4442-01 10 100167414 100167414 T G PYROXD2 Splice_Site p.X81_splice 0.41 TCGA-CG-4442-01 10 101841235 101841235 T G CPN1 Missense_Mutation p.S50R 0.38 deleterious(0) possibly_damaging(0.82) TCGA-CG-4442-01 10 103310573 103310573 C - BTRC Frame_Shift_Del p.R594Vfs*14 0.36 TCGA-CG-4442-01 10 104117861 104117861 G A GBF1 Silent p.R235R 0.36 TCGA-CG-4442-01 10 104860806 104860806 T C NT5C2 Missense_Mutation p.T179A 0.23 tolerated(0.28) benign(0.001) TCGA-CG-4442-01 10 11060019 11060019 C - CELF2 5'UTR 0.44 TCGA-CG-4442-01 10 111893350 111893350 A - ADD3 Frame_Shift_Del p.K701Rfs*8 0.29 TCGA-CG-4442-01 10 112839027 112839029 TTC - ADRA2A In_Frame_Del p.F427del 0.34 TCGA-CG-4442-01 10 115639427 115639427 A T NHLRC2 Silent p.A294A 0.24 TCGA-CG-4442-01 10 116881571 116881571 A G ATRNL1 Silent p.V162V 0.26 TCGA-CG-4442-01 10 1175291 1175291 C T WDR37 3'UTR 0.32 TCGA-CG-4442-01 10 118960795 118960795 G A KCNK18 Missense_Mutation p.V117M 0.31 deleterious(0) probably_damaging(0.999) TCGA-CG-4442-01 10 121587268 121587268 C T INPP5F Silent p.C1125C 0.17 TCGA-CG-4442-01 10 123842738 123842738 G - TACC2 Frame_Shift_Del p.V243Wfs*6 0.51 TCGA-CG-4442-01 10 123971212 123971212 G A TACC2 Silent p.T2424T 0.43 TCGA-CG-4442-01 10 124457552 124457553 - T C10orf120 Frame_Shift_Ins p.N235Kfs*28 0.33 TCGA-CG-4442-01 10 126172753 126172753 G A LHPP Silent p.S57S 0.38 TCGA-CG-4442-01 10 126683183 126683183 T C CTBP2 Missense_Mutation p.Y752C 0.25 deleterious(0) probably_damaging(0.995) TCGA-CG-4442-01 10 127504804 127504804 G A UROS Missense_Mutation p.A30V 0.32 tolerated(0.07) possibly_damaging(0.817) TCGA-CG-4442-01 10 129237392 129237392 A - DOCK1 Frame_Shift_Del p.R1702Gfs*26 0.32 TCGA-CG-4442-01 10 13151192 13151192 C - OPTN Frame_Shift_Del p.H26Tfs*19 0.39 TCGA-CG-4442-01 10 133784230 133784230 T C BNIP3 Missense_Mutation p.M151V 0.35 deleterious(0.02) probably_damaging(0.996) TCGA-CG-4442-01 10 134595560 134595560 C T INPP5A 3'UTR 0.38 TCGA-CG-4442-01 10 135083930 135083930 C T ADAM8 Silent p.A573A 0.39 TCGA-CG-4442-01 10 14950433 14950433 T - DCLRE1C Frame_Shift_Del p.R685Efs*6 0.32 TCGA-CG-4442-01 10 17113596 17113596 C A CUBN Silent p.G818G 0.35 TCGA-CG-4442-01 10 17865166 17865166 A G MRC1L1 Missense_Mutation p.D52G 0.45 benign(0.197) TCGA-CG-4442-01 10 25887406 25887406 A G GPR158 Missense_Mutation p.T951A 0.34 tolerated(0.96) benign(0.001) TCGA-CG-4442-01 10 26457756 26457756 A - MYO3A Frame_Shift_Del p.I1078Yfs*10 0.30 TCGA-CG-4442-01 10 26789948 26789948 A G APBB1IP Missense_Mutation p.I121V 0.34 tolerated(0.49) benign(0.001) TCGA-CG-4442-01 10 27400714 27400714 T C YME1L1 3'UTR 0.44 TCGA-CG-4442-01 10 293373 293373 A G ZMYND11 Silent p.G398G 0.04 TCGA-CG-4442-01 10 32306209 32306209 T C KIF5B Missense_Mutation p.K875E 0.35 deleterious(0.01) benign(0.112) TCGA-CG-4442-01 10 33552726 33552726 T C NRP1 Missense_Mutation p.N169S 0.33 deleterious(0.02) probably_damaging(0.995) TCGA-CG-4442-01 10 35896701 35896701 T C GJD4 Missense_Mutation p.L87P 0.05 deleterious(0) probably_damaging(0.998) TCGA-CG-4442-01 10 45496198 45496198 T C C10orf25 Missense_Mutation p.N37S 0.27 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-CG-4442-01 10 45498706 45498706 T - ZNF22 Intron 0.40 TCGA-CG-4442-01 10 45938585 45938585 C T ALOX5 Missense_Mutation p.R458W 0.29 deleterious(0) probably_damaging(0.999) TCGA-CG-4442-01 10 46969273 46969273 G A SYT15 Missense_Mutation p.P63L 0.12 tolerated(0.31) benign(0.004) TCGA-CG-4442-01 10 51465538 51465538 T - AGAP7 Frame_Shift_Del p.E307Rfs*18 0.33 TCGA-CG-4442-01 10 5808594 5808594 G A GDI2 Silent p.Y333Y 0.24 TCGA-CG-4442-01 10 60036948 60036948 T C CISD1 Missense_Mutation p.Y35H 0.28 tolerated(0.2) possibly_damaging(0.793) TCGA-CG-4442-01 10 61827769 61827769 T C ANK3 Splice_Site p.X4082_splice 0.28 TCGA-CG-4442-01 10 64573620 64573620 G A EGR2 Missense_Mutation p.P260S 0.42 deleterious(0) possibly_damaging(0.857) TCGA-CG-4442-01 10 67829230 67829230 C A CTNNA3 Silent p.L665L 0.31 TCGA-CG-4442-01 10 69926167 69926167 C - MYPN Frame_Shift_Del p.K575Nfs*9 0.34 TCGA-CG-4442-01 10 70136913 70136913 T - RUFY2 Intron 0.70 TCGA-CG-4442-01 10 70509441 70509441 T C CCAR1 Missense_Mutation p.C373R 0.33 tolerated(0.34) benign(0.249) TCGA-CG-4442-01 10 70768669 70768669 G A KIAA1279 Missense_Mutation p.A288T 0.33 tolerated(0.59) benign(0.001) TCGA-CG-4442-01 10 71026488 71026488 T C HKDC1 Missense_Mutation p.L910S 0.33 deleterious(0.01) benign(0.028) TCGA-CG-4442-01 10 7239569 7239569 T G SFMBT2 Silent p.R547R 0.27 TCGA-CG-4442-01 10 73405660 73405660 G A CDH23 Missense_Mutation p.V405I 0.41 tolerated(0.57) benign(0.02) TCGA-CG-4442-01 10 73491866 73491866 A G CDH23 Missense_Mutation p.M1285V 0.07 tolerated(0.45) benign(0.005) TCGA-CG-4442-01 10 73571099 73571099 G A CDH23 Silent p.K795K 0.36 TCGA-CG-4442-01 10 74684031 74684031 A G OIT3 Silent p.L332L 0.30 TCGA-CG-4442-01 10 75279629 75279629 C T USP54 Silent p.Q868Q 0.39 TCGA-CG-4442-01 10 75407636 75407636 C T SYNPO2L Missense_Mutation p.A592T 0.38 tolerated(0.32) benign(0.046) TCGA-CG-4442-01 10 75567574 75567575 - A NDST2 Frame_Shift_Ins p.L191Ffs*35 0.31 TCGA-CG-4442-01 10 79761979 79761979 T C POLR3A Missense_Mutation p.T779A 0.39 deleterious(0) benign(0.026) TCGA-CG-4442-01 10 8007477 8007477 T C TAF3 Silent p.P668P 0.24 TCGA-CG-4442-01 10 87484209 87484209 T C GRID1 Missense_Mutation p.I586M 0.29 tolerated(0.08) benign(0.077) TCGA-CG-4442-01 10 88820800 88820800 T C GLUD1 Missense_Mutation p.N311D 0.26 deleterious(0) possibly_damaging(0.453) TCGA-CG-4442-01 10 90342950 90342950 C T RNLS 5'UTR 0.27 TCGA-CG-4442-01 10 96117944 96117944 T C NOC3L Silent p.E82E 0.35 TCGA-CG-4442-01 10 96541727 96541727 T C CYP2C19 Silent p.I264I 0.39 TCGA-CG-4442-01 10 98292872 98292872 A G TM9SF3 Missense_Mutation p.S421P 0.40 tolerated(0.16) benign(0.049) TCGA-CG-4442-01 11 102593239 102593239 G A MMP8 Missense_Mutation p.R90C 0.39 deleterious(0) probably_damaging(0.978) TCGA-CG-4442-01 11 102595662 102595662 C T MMP8 5'UTR 0.39 TCGA-CG-4442-01 11 102984302 102984302 T - DYNC2H1 Frame_Shift_Del p.F79Sfs*7 0.32 TCGA-CG-4442-01 11 104034730 104034730 C - PDGFD 5'UTR 0.43 TCGA-CG-4442-01 11 105836774 105836774 G T GRIA4 Intron 0.29 TCGA-CG-4442-01 11 108044069 108044069 T - NPAT Frame_Shift_Del p.S548Vfs*11 0.34 TCGA-CG-4442-01 11 108593810 108593810 C T DDX10 Missense_Mutation p.A529V 0.35 tolerated(0.28) benign(0.001) TCGA-CG-4442-01 11 108788854 108788854 T - DDX10 Intron 0.45 TCGA-CG-4442-01 11 111796699 111796699 G T C11orf52 Nonsense_Mutation p.G50* 0.42 TCGA-CG-4442-01 11 114453454 114453454 C A NXPE4 Missense_Mutation p.R129L 0.31 tolerated(0.11) benign(0.373) TCGA-CG-4442-01 11 116660973 116660973 G A APOA5 Silent p.F324F 0.35 TCGA-CG-4442-01 11 116767059 116767059 C T SIK3 Missense_Mutation p.G201S 0.30 deleterious(0.01) benign(0.276) TCGA-CG-4442-01 11 117303920 117303920 G A DSCAML1 Missense_Mutation p.R1714W 0.34 deleterious(0) probably_damaging(1) TCGA-CG-4442-01 11 118255401 118255401 C A UBE4A Missense_Mutation p.P757H 0.25 deleterious(0.03) possibly_damaging(0.846) TCGA-CG-4442-01 11 118363823 118363823 C T KMT2A Missense_Mutation p.R1686C 0.36 probably_damaging(0.997) TCGA-CG-4442-01 11 118463520 118463520 G A ARCN1 Missense_Mutation p.V361M 0.35 deleterious(0) probably_damaging(0.99) TCGA-CG-4442-01 11 118629513 118629513 T - DDX6 Frame_Shift_Del p.V322Yfs*13 0.37 TCGA-CG-4442-01 11 118770759 118770759 C T BCL9L Missense_Mutation p.M1091I 0.26 probably_damaging(0.942) TCGA-CG-4442-01 11 119025010 119025010 C T ABCG4 Missense_Mutation p.P133S 0.37 tolerated(0.14) benign(0.07) TCGA-CG-4442-01 11 119054223 119054223 C T NLRX1 3'UTR 0.50 TCGA-CG-4442-01 11 119209960 119209960 C G C1QTNF5 3'UTR 0.41 TCGA-CG-4442-01 11 123886785 123886785 T C OR10G4 Silent p.C168C 0.31 TCGA-CG-4442-01 11 125542403 125542403 G A ACRV1 3'UTR 0.37 TCGA-CG-4442-01 11 125765567 125765567 G A PUS3 Missense_Mutation p.R166W 0.34 deleterious(0) probably_damaging(0.997) TCGA-CG-4442-01 11 126081486 126081486 G A RPUSD4 Silent p.N16N 0.31 TCGA-CG-4442-01 11 1283271 1283271 C T MUC5B 3'UTR 0.56 TCGA-CG-4442-01 11 128564097 128564097 G T FLI1 5'UTR 0.28 TCGA-CG-4442-01 11 129775589 129775589 T C PRDM10 Missense_Mutation p.T1075A 0.60 tolerated_low_confidence(1) benign(0.001) TCGA-CG-4442-01 11 13732384 13732384 G A FAR1 Silent p.S230S 0.39 TCGA-CG-4442-01 11 14632684 14632684 G A PSMA1 5'UTR 0.50 TCGA-CG-4442-01 11 1619204 1619204 C A KRTAP5-2 Missense_Mutation p.G93C 0.21 tolerated_low_confidence(0.25) unknown(0) TCGA-CG-4442-01 11 1619234 1619234 C A KRTAP5-2 Missense_Mutation p.G83C 0.27 tolerated_low_confidence(0.28) unknown(0) TCGA-CG-4442-01 11 18159005 18159005 C T MRGPRX3 Missense_Mutation p.R86C 0.32 tolerated(0.18) benign(0.004) TCGA-CG-4442-01 11 1857151 1857151 G - SYT8 Frame_Shift_Del p.D114Mfs*25 0.29 TCGA-CG-4442-01 11 1858627 1858627 G A SYT8 Missense_Mutation p.R391H 0.35 tolerated(0.6) unknown(0) TCGA-CG-4442-01 11 2192945 2192945 C T TH Silent p.K24K 0.40 TCGA-CG-4442-01 11 24518834 24518834 G A LUZP2 Silent p.A15A 0.26 TCGA-CG-4442-01 11 27679694 27679694 C T BDNF Missense_Mutation p.V222M 0.28 deleterious(0.02) probably_damaging(0.994) TCGA-CG-4442-01 11 30033563 30033563 A - KCNA4 Frame_Shift_Del p.F221Lfs*21 0.30 TCGA-CG-4442-01 11 3141754 3141754 G A OSBPL5 Missense_Mutation p.T168M 0.27 deleterious(0) probably_damaging(1) TCGA-CG-4442-01 11 31812317 31812317 G - PAX6 Frame_Shift_Del p.P389Hfs*7 0.37 TCGA-CG-4442-01 11 3380779 3380779 T C ZNF195 Missense_Mutation p.T487A 0.04 deleterious(0) possibly_damaging(0.648) TCGA-CG-4442-01 11 34470818 34470818 C A CAT Missense_Mutation p.P49H 0.43 deleterious(0) probably_damaging(1) TCGA-CG-4442-01 11 36615184 36615184 G T RAG2 Missense_Mutation p.L179M 0.39 tolerated(0.33) possibly_damaging(0.639) TCGA-CG-4442-01 11 3681478 3681478 C - ART1 Frame_Shift_Del p.F246Lfs*6 0.38 TCGA-CG-4442-01 11 46338915 46338915 G A CREB3L1 Missense_Mutation p.A379T 0.41 deleterious(0.01) benign(0.055) TCGA-CG-4442-01 11 46418971 46418971 G A AMBRA1 3'UTR 0.24 TCGA-CG-4442-01 11 46917831 46917831 C A LRP4 Silent p.G326G 0.04 TCGA-CG-4442-01 11 47353733 47353733 A G MYBPC3 Missense_Mutation p.V1235A 0.36 deleterious(0) possibly_damaging(0.73) TCGA-CG-4442-01 11 49208219 49208219 C T FOLH1 Missense_Mutation p.G206R 0.12 deleterious(0) probably_damaging(1) TCGA-CG-4442-01 11 5345074 5345074 C T OR51B2 Missense_Mutation p.V152I 0.32 tolerated(0.28) benign(0.02) TCGA-CG-4442-01 11 5462728 5462728 C T OR51I1 Missense_Mutation p.G6D 0.30 tolerated(0.6) benign(0.005) TCGA-CG-4442-01 11 55418630 55418630 T C OR4S2 Missense_Mutation p.L84S 0.39 deleterious(0) possibly_damaging(0.851) TCGA-CG-4442-01 11 559080 559080 C T C11orf35 Intron 0.47 TCGA-CG-4442-01 11 56230509 56230509 G A OR5M9 Silent p.A123A 0.33 TCGA-CG-4442-01 11 56237709 56237709 T - OR5M3 Frame_Shift_Del p.T89Qfs*8 0.32 TCGA-CG-4442-01 11 57310315 57310316 - G SMTNL1 Frame_Shift_Ins p.E87Gfs*7 0.32 TCGA-CG-4442-01 11 57995687 57995687 C T OR10Q1 Missense_Mutation p.V221I 0.33 tolerated(1) benign(0.025) TCGA-CG-4442-01 11 58170465 58170466 CA - OR5B3 Frame_Shift_Del p.A140Sfs*23 0.40 TCGA-CG-4442-01 11 58391580 58391580 A G CNTF Missense_Mutation p.Q63R 0.36 tolerated(1) benign(0.002) TCGA-CG-4442-01 11 59245838 59245839 - A OR4D10 3'UTR 0.31 TCGA-CG-4442-01 11 60777101 60777101 T A CD6 Missense_Mutation p.V280E 0.25 deleterious(0) probably_damaging(0.999) TCGA-CG-4442-01 11 60885876 60885876 C T CD5 Silent p.Y108Y 0.33 TCGA-CG-4442-01 11 61490373 61490373 T C DAGLA Missense_Mutation p.V117A 0.38 tolerated(0.6) benign(0.001) TCGA-CG-4442-01 11 61539013 61539013 C - MYRF Frame_Shift_Del p.S264Afs*8 0.30 TCGA-CG-4442-01 11 61632650 61632650 A G FADS2 Missense_Mutation p.N395S 0.04 deleterious(0.02) possibly_damaging(0.734) TCGA-CG-4442-01 11 61908215 61908215 C T INCENP Silent p.D461D 0.48 TCGA-CG-4442-01 11 62301479 62301479 T C AHNAK Missense_Mutation p.D137G 0.31 probably_damaging(0.972) TCGA-CG-4442-01 11 63312165 63312165 G A RARRES3 Missense_Mutation p.R64H 0.38 tolerated(0.16) benign(0.01) TCGA-CG-4442-01 11 63883715 63883715 G A FLRT1 5'UTR 0.30 TCGA-CG-4442-01 11 64055217 64055217 G - GPR137 Frame_Shift_Del p.A204Pfs*8 0.42 TCGA-CG-4442-01 11 6432080 6432080 A T APBB1 Missense_Mutation p.D166E 0.37 tolerated(1) benign(0) TCGA-CG-4442-01 11 64527327 64527327 C T PYGM Missense_Mutation p.S15N 0.04 deleterious(0.02) probably_damaging(0.954) TCGA-CG-4442-01 11 64972271 64972271 G A CAPN1 Missense_Mutation p.R428H 0.34 deleterious(0.02) possibly_damaging(0.891) TCGA-CG-4442-01 11 65172535 65172535 G T FRMD8 Missense_Mutation p.E424D 0.33 tolerated(0.61) benign(0.004) TCGA-CG-4442-01 11 65298114 65298114 C T SCYL1 Silent p.A288A 0.37 TCGA-CG-4442-01 11 65546733 65546733 C T AP5B1 Missense_Mutation p.A411T 0.34 tolerated(1) benign(0.035) TCGA-CG-4442-01 11 65651432 65651432 G A FIBP 3'UTR 0.33 TCGA-CG-4442-01 11 65788382 65788382 G A CATSPER1 Silent p.D609D 0.35 TCGA-CG-4442-01 11 66055105 66055105 G - YIF1A Frame_Shift_Del p.R131Gfs*50 0.37 TCGA-CG-4442-01 11 66084371 66084371 G T CD248 Missense_Mutation p.T43N 0.40 deleterious(0.04) probably_damaging(0.934) TCGA-CG-4442-01 11 66136862 66136862 G T SLC29A2 Missense_Mutation p.L85I 0.40 deleterious(0) possibly_damaging(0.891) TCGA-CG-4442-01 11 66472378 66472378 C T SPTBN2 Missense_Mutation p.R790Q 0.32 tolerated(0.21) benign(0.353) TCGA-CG-4442-01 11 66581352 66581352 C A C11orf80 Missense_Mutation p.P352H 0.20 deleterious(0) probably_damaging(0.979) TCGA-CG-4442-01 11 66617355 66617355 T C PC Intron 0.24 TCGA-CG-4442-01 11 66833381 66833381 G A RHOD Silent p.T49T 0.37 TCGA-CG-4442-01 11 67046979 67046979 G A ADRBK1 Missense_Mutation p.A119T 0.25 tolerated(0.1) benign(0.07) TCGA-CG-4442-01 11 67816415 67816415 G A TCIRG1 Missense_Mutation p.G542S 0.31 deleterious(0) probably_damaging(1) TCGA-CG-4442-01 11 6789258 6789258 G A OR2AG2 Silent p.L311L 0.37 TCGA-CG-4442-01 11 68548161 68548161 G T CPT1A Missense_Mutation p.L469I 0.30 tolerated(0.39) benign(0.015) TCGA-CG-4442-01 11 70028653 70028653 T C ANO1 Missense_Mutation p.Y817H 0.34 deleterious(0) probably_damaging(1) TCGA-CG-4442-01 11 71192975 71192975 T - NADSYN1 Frame_Shift_Del p.L353Cfs*4 0.44 TCGA-CG-4442-01 11 71249264 71249264 G T KRTAP5-8 Missense_Mutation p.G55C 0.35 tolerated_low_confidence(0.06) unknown(0) TCGA-CG-4442-01 11 71259613 71259613 G T KRTAP5-9 5'UTR 0.44 TCGA-CG-4442-01 11 71806233 71806233 C T LRTOMT Intron 0.37 TCGA-CG-4442-01 11 71932561 71932561 T G FOLR2 Missense_Mutation p.Y175D 0.34 deleterious(0) probably_damaging(0.936) TCGA-CG-4442-01 11 71932824 71932824 T C FOLR2 3'UTR 0.48 TCGA-CG-4442-01 11 72424265 72424265 G A ARAP1 Missense_Mutation p.P235S 0.08 tolerated(0.82) benign(0.193) TCGA-CG-4442-01 11 73021527 73021527 C - ARHGEF17 Frame_Shift_Del p.P617Lfs*10 0.33 TCGA-CG-4442-01 11 73820094 73820094 T C C2CD3 Silent p.K649K 0.37 TCGA-CG-4442-01 11 73820180 73820180 G A C2CD3 Nonsense_Mutation p.R621* 0.42 TCGA-CG-4442-01 11 7531212 7531212 G T OLFML1 Silent p.G334G 0.39 TCGA-CG-4442-01 11 75316769 75316769 T - MAP6 Intron 0.36 TCGA-CG-4442-01 11 7687700 7687700 G T CYB5R2 Missense_Mutation p.L214M 0.33 deleterious(0) probably_damaging(0.994) TCGA-CG-4442-01 11 77413116 77413116 T - RSF1 Frame_Shift_Del p.K386Nfs*6 0.41 TCGA-CG-4442-01 11 77667073 77667073 C T INTS4 Missense_Mutation p.R278H 0.39 tolerated(0.07) possibly_damaging(0.629) TCGA-CG-4442-01 11 78369281 78369281 C T TENM4 Missense_Mutation p.R2711Q 0.41 tolerated(0.26) benign(0.013) TCGA-CG-4442-01 11 802043 802043 G A PIDD Silent p.C408C 0.41 TCGA-CG-4442-01 11 8705792 8705792 C A RPL27A Intron 0.41 TCGA-CG-4442-01 11 88241901 88241901 C T GRM5 Silent p.P1166P 0.30 TCGA-CG-4442-01 11 88300530 88300530 A T GRM5 Missense_Mutation p.I774N 0.41 deleterious(0) probably_damaging(0.993) TCGA-CG-4442-01 11 9096091 9096091 A G SCUBE2 Missense_Mutation p.C152R 0.06 deleterious(0) probably_damaging(1) TCGA-CG-4442-01 11 92534857 92534857 T C FAT3 Missense_Mutation p.V2893A 0.34 probably_damaging(0.999) TCGA-CG-4442-01 11 94224123 94224123 T C MRE11A Missense_Mutation p.E10G 0.29 deleterious(0) possibly_damaging(0.465) TCGA-CG-4442-01 11 94910901 94910901 T C SESN3 Missense_Mutation p.H410R 0.40 deleterious(0) probably_damaging(0.999) TCGA-CG-4442-01 11 9530309 9530309 A G ZNF143 Missense_Mutation p.T431A 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-CG-4442-01 11 959505 959505 G T AP2A2 Missense_Mutation p.G46C 0.44 deleterious(0) probably_damaging(0.974) TCGA-CG-4442-01 12 1036391 1036391 A G RAD52 Silent p.S129S 0.26 TCGA-CG-4442-01 12 104200659 104200659 G A NT5DC3 Missense_Mutation p.R148C 0.30 deleterious(0) probably_damaging(1) TCGA-CG-4442-01 12 108169229 108169229 C T ASCL4 Silent p.N79N 0.42 TCGA-CG-4442-01 12 109278888 109278888 G A DAO Missense_Mutation p.A36T 0.40 deleterious(0) probably_damaging(0.975) TCGA-CG-4442-01 12 109702084 109702084 C T ACACB Silent p.L2279L 0.34 TCGA-CG-4442-01 12 110019240 110019240 C - MVK Frame_Shift_Del p.A141Rfs*18 0.48 TCGA-CG-4442-01 12 110232159 110232159 G A TRPV4 Missense_Mutation p.A489V 0.31 deleterious(0) probably_damaging(0.987) TCGA-CG-4442-01 12 110240832 110240832 A G TRPV4 Missense_Mutation p.F226L 0.33 tolerated(0.44) benign(0.052) TCGA-CG-4442-01 12 110293442 110293442 G A GLTP Silent p.I143I 0.38 TCGA-CG-4442-01 12 11091565 11091566 - T TAS2R14 Frame_Shift_Ins p.M81Nfs*7 0.32 TCGA-CG-4442-01 12 111785947 111785948 - C CUX2 Frame_Shift_Ins p.A1430Cfs*11 0.32 TCGA-CG-4442-01 12 117703230 117703230 C - NOS1 Frame_Shift_Del p.G676Afs*64 0.52 TCGA-CG-4442-01 12 118481123 118481123 C - WSB2 Frame_Shift_Del p.G81Afs*67 0.38 TCGA-CG-4442-01 12 118841306 118841306 T C SUDS3 Missense_Mutation p.Y263H 0.07 tolerated(0.08) benign(0.008) TCGA-CG-4442-01 12 120567103 120567103 G A GCN1L1 Missense_Mutation p.R2623W 0.38 probably_damaging(0.983) TCGA-CG-4442-01 12 120660799 120660799 G A PXN Silent p.F120F 0.27 TCGA-CG-4442-01 12 120894950 120894950 G A GATC Missense_Mutation p.R109H 0.25 tolerated(0.38) benign(0.004) TCGA-CG-4442-01 12 122018017 122018017 G - KDM2B Intron 0.32 TCGA-CG-4442-01 12 122219030 122219030 C T RHOF Missense_Mutation p.D99N 0.25 deleterious(0.01) probably_damaging(1) TCGA-CG-4442-01 12 122281717 122281718 CT - HPD Frame_Shift_Del p.G285Pfs*30 0.30 TCGA-CG-4442-01 12 122395142 122395142 C G WDR66 Missense_Mutation p.D566E 0.27 tolerated(0.07) benign(0.03) TCGA-CG-4442-01 12 12247797 12247797 T C BCL2L14 Missense_Mutation p.V293A 0.44 deleterious(0.01) possibly_damaging(0.654) TCGA-CG-4442-01 12 123073263 123073263 T C KNTC1 Missense_Mutation p.F1300S 0.50 tolerated(0.18) benign(0.043) TCGA-CG-4442-01 12 123333393 123333393 C T HIP1R Silent p.D117D 0.37 TCGA-CG-4442-01 12 123950369 123950369 C T SNRNP35 Silent p.Y99Y 0.35 TCGA-CG-4442-01 12 130846109 130846109 G A PIWIL1 Missense_Mutation p.A645T 0.33 deleterious(0.01) probably_damaging(0.953) TCGA-CG-4442-01 12 130855727 130855728 - T PIWIL1 Frame_Shift_Ins p.I779Yfs*10 0.33 TCGA-CG-4442-01 12 133201398 133201398 T G POLE Splice_Site p.X2250_splice 0.33 TCGA-CG-4442-01 12 14577801 14577802 - A ATF7IP Frame_Shift_Ins p.N320Kfs*4 0.34 TCGA-CG-4442-01 12 14954349 14954349 A - WBP11 5'UTR 0.40 TCGA-CG-4442-01 12 14993880 14993882 TGG A ART4 Frame_Shift_Del p.T117Ifs*18 0.31 TCGA-CG-4442-01 12 16713448 16713448 G A LMO3 Silent p.C99C 0.36 TCGA-CG-4442-01 12 21628712 21628712 A G RECQL Silent p.V332V 0.05 TCGA-CG-4442-01 12 25398281 25398281 C T KRAS Missense_Mutation p.G13D 0.19 deleterious(0.04) possibly_damaging(0.506) TCGA-CG-4442-01 12 2692102 2692102 G A CACNA1C Missense_Mutation p.G740R 0.50 deleterious(0) probably_damaging(0.992) TCGA-CG-4442-01 12 2764356 2764356 G A CACNA1C Missense_Mutation p.R1443Q 0.27 deleterious(0.02) probably_damaging(0.951) TCGA-CG-4442-01 12 2907948 2907948 G A FKBP4 Missense_Mutation p.R157H 0.34 deleterious(0.01) benign(0.199) TCGA-CG-4442-01 12 2929961 2929961 G A ITFG2 Silent p.A206A 0.36 TCGA-CG-4442-01 12 333237 333237 C T SLC6A13 Missense_Mutation p.R411H 0.37 tolerated(0.07) probably_damaging(0.996) TCGA-CG-4442-01 12 33592483 33592483 T - SYT10 5'UTR 0.38 TCGA-CG-4442-01 12 395297 395297 T A KDM5A Intron 0.42 TCGA-CG-4442-01 12 40013372 40013372 T C ABCD2 Missense_Mutation p.R16G 0.28 deleterious_low_confidence(0) possibly_damaging(0.51) TCGA-CG-4442-01 12 42859016 42859016 C T PRICKLE1 Missense_Mutation p.A274T 0.38 deleterious(0) probably_damaging(1) TCGA-CG-4442-01 12 442691 442691 T C KDM5A Missense_Mutation p.I539V 0.28 deleterious(0) possibly_damaging(0.581) TCGA-CG-4442-01 12 47178327 47178327 C T SLC38A4 Missense_Mutation p.G164E 0.38 deleterious(0) probably_damaging(0.991) TCGA-CG-4442-01 12 48181527 48181527 G - HDAC7 Frame_Shift_Del p.M808Wfs*12 0.24 TCGA-CG-4442-01 12 49167430 49167430 A G ADCY6 Missense_Mutation p.Y815H 0.22 deleterious(0.03) probably_damaging(0.999) TCGA-CG-4442-01 12 49412544 49412544 G A PRKAG1 5'UTR 0.34 TCGA-CG-4442-01 12 49434800 49434800 C T KMT2D Silent p.S2251S 0.24 TCGA-CG-4442-01 12 49443667 49443667 C - KMT2D Frame_Shift_Del p.G1235Vfs*95 0.40 TCGA-CG-4442-01 12 49448408 49448408 C - KMT2D Frame_Shift_Del p.S102Afs*28 0.33 TCGA-CG-4442-01 12 51100412 51100412 T C DIP2B Missense_Mutation p.L833S 0.38 deleterious(0) probably_damaging(1) TCGA-CG-4442-01 12 5153819 5153819 G A KCNA5 Missense_Mutation p.R169Q 0.36 deleterious(0) probably_damaging(0.997) TCGA-CG-4442-01 12 51865099 51865099 C T SLC4A8 Nonsense_Mutation p.R563* 0.40 TCGA-CG-4442-01 12 52827847 52827847 C T KRT75 Missense_Mutation p.R81Q 0.34 tolerated(0.28) benign(0.005) TCGA-CG-4442-01 12 52960950 52960950 C A KRT74 Missense_Mutation p.V465F 0.50 tolerated(0.13) benign(0.398) TCGA-CG-4442-01 12 53343180 53343180 G A KRT18 Missense_Mutation p.G75R 0.32 tolerated(0.05) possibly_damaging(0.882) TCGA-CG-4442-01 12 53818978 53818978 C T AMHR2 Silent p.L152L 0.33 TCGA-CG-4442-01 12 54801974 54801974 T C ITGA5 Missense_Mutation p.Y246C 0.29 tolerated(0.14) possibly_damaging(0.479) TCGA-CG-4442-01 12 55025549 55025549 C T LACRT Missense_Mutation p.V110M 0.04 deleterious_low_confidence(0.02) possibly_damaging(0.791) TCGA-CG-4442-01 12 55863618 55863619 - A OR6C70 Frame_Shift_Ins p.Y102Lfs*18 0.27 TCGA-CG-4442-01 12 56489571 56489571 G A ERBB3 Missense_Mutation p.R679Q 0.35 deleterious(0) probably_damaging(0.999) TCGA-CG-4442-01 12 56642611 56642611 G A ANKRD52 Missense_Mutation p.R546W 0.32 deleterious(0) probably_damaging(0.989) TCGA-CG-4442-01 12 57059872 57059872 T - PTGES3 Intron 0.47 TCGA-CG-4442-01 12 57106300 57106300 A - NACA 3'UTR 0.35 TCGA-CG-4442-01 12 57435035 57435035 T A MYO1A Missense_Mutation p.N401I 0.36 deleterious(0) probably_damaging(0.993) TCGA-CG-4442-01 12 57860075 57860075 G - GLI1 Frame_Shift_Del p.G274Afs*6 0.59 TCGA-CG-4442-01 12 57871291 57871291 A G ARHGAP9 Missense_Mutation p.L236P 0.30 tolerated(0.25) possibly_damaging(0.655) TCGA-CG-4442-01 12 57924555 57924555 G A DCTN2 Nonsense_Mutation p.Q380* 0.36 TCGA-CG-4442-01 12 58006476 58006476 A G ARHGEF25 Intron 0.25 TCGA-CG-4442-01 12 62786091 62786091 A - USP15 Frame_Shift_Del p.K783Nfs*4 0.26 TCGA-CG-4442-01 12 62954787 62954787 T C MON2 Missense_Mutation p.V1309A 0.20 tolerated(0.06) possibly_damaging(0.749) TCGA-CG-4442-01 12 6309658 6309658 C T CD9 5'UTR 0.23 TCGA-CG-4442-01 12 64055211 64055212 - A DPY19L2 Frame_Shift_Ins p.L167Ffs*10 0.08 TCGA-CG-4442-01 12 64377821 64377821 A - SRGAP1 Frame_Shift_Del p.A57Lfs*11 0.39 TCGA-CG-4442-01 12 66221835 66221835 A - HMGA2 Frame_Shift_Del p.N57Tfs*109 0.34 TCGA-CG-4442-01 12 6692419 6692419 T G CHD4 Missense_Mutation p.K1335N 0.38 deleterious(0) probably_damaging(0.937) TCGA-CG-4442-01 12 6707515 6707515 G T CHD4 Missense_Mutation p.P520H 0.34 deleterious(0.03) probably_damaging(0.953) TCGA-CG-4442-01 12 6753468 6753468 G T ACRBP Missense_Mutation p.S260Y 0.42 tolerated(1) benign(0.235) TCGA-CG-4442-01 12 6881949 6881949 C A LAG3 5'UTR 0.48 TCGA-CG-4442-01 12 69050939 69050939 G A RAP1B Missense_Mutation p.R176H 0.31 tolerated(0.06) benign(0.001) TCGA-CG-4442-01 12 69747052 69747053 - G LYZ 3'UTR 0.30 TCGA-CG-4442-01 12 70149312 70149312 C T RAB3IP Missense_Mutation p.R58W 0.34 deleterious_low_confidence(0) benign(0.009) TCGA-CG-4442-01 12 7044832 7044832 T C ATN1 Silent p.S134S 0.31 TCGA-CG-4442-01 12 7187997 7187997 C - C1R Frame_Shift_Del p.D601Ifs*8 0.35 TCGA-CG-4442-01 12 72317071 72317071 T C TBC1D15 3'UTR 0.30 TCGA-CG-4442-01 12 7242010 7242010 G - C1R Frame_Shift_Del p.P215Lfs*100 0.41 TCGA-CG-4442-01 12 75816793 75816793 A - GLIPR1L2 Intron 0.21 TCGA-CG-4442-01 12 76453978 76453978 A G NAP1L1 Silent p.Y96Y 0.44 TCGA-CG-4442-01 12 76740960 76740960 A - BBS10 Frame_Shift_Del p.S269Pfs*9 0.36 TCGA-CG-4442-01 12 78513556 78513556 G A NAV3 Missense_Mutation p.V1194I 0.37 tolerated(0.3) benign(0.009) TCGA-CG-4442-01 12 81688718 81688718 T C PPFIA2 Missense_Mutation p.R941G 0.29 deleterious(0.01) benign(0.445) TCGA-CG-4442-01 12 81839401 81839401 G T PPFIA2 Silent p.S168S 0.33 TCGA-CG-4442-01 12 8290795 8290795 G A CLEC4A Missense_Mutation p.R209H 0.33 tolerated(0.29) benign(0.009) TCGA-CG-4442-01 12 85277601 85277601 T C SLC6A15 Intron 0.32 TCGA-CG-4442-01 12 85449618 85449618 A - LRRIQ1 Frame_Shift_Del p.K351Sfs*21 0.35 TCGA-CG-4442-01 12 8926340 8926340 A G RIMKLB Missense_Mutation p.N374S 0.21 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-CG-4442-01 12 9095057 9095057 C T M6PR Silent p.Q222Q 0.34 TCGA-CG-4442-01 12 94772812 94772812 T C CCDC41 Missense_Mutation p.R186G 0.35 deleterious(0.01) benign(0.011) TCGA-CG-4442-01 12 96292432 96292432 T - CCDC38 Frame_Shift_Del p.A150Qfs*24 0.36 TCGA-CG-4442-01 12 98921672 98921672 A - TMPO Frame_Shift_Del p.T99Lfs*12 0.36 TCGA-CG-4442-01 12 99007899 99007899 T C IKBIP Missense_Mutation p.T173A 0.04 tolerated(1) benign(0.179) TCGA-CG-4442-01 13 108862651 108862651 A G LIG4 Silent p.D322D 0.36 TCGA-CG-4442-01 13 113851504 113851504 G A PCID2 Missense_Mutation p.T85I 0.32 tolerated(0.07) benign(0.039) TCGA-CG-4442-01 13 114507949 114507949 G A TMEM255B Missense_Mutation p.R254H 0.41 tolerated(0.48) possibly_damaging(0.463) TCGA-CG-4442-01 13 22178154 22178154 G A MICU2 Missense_Mutation p.A45V 0.37 tolerated(0.26) benign(0.197) TCGA-CG-4442-01 13 25030500 25030500 T - PARP4 Frame_Shift_Del p.K847Nfs*25 0.38 TCGA-CG-4442-01 13 25911075 25911075 G A NUPL1 Silent p.G479G 0.41 TCGA-CG-4442-01 13 27246073 27246074 - A WASF3 Frame_Shift_Ins p.M165Nfs*27 0.32 TCGA-CG-4442-01 13 28601359 28601359 A - FLT3 Frame_Shift_Del p.F691Lfs*13 0.34 TCGA-CG-4442-01 13 29286869 29286869 C A SLC46A3 Missense_Mutation p.M336I 0.37 tolerated(0.63) benign(0.002) TCGA-CG-4442-01 13 35716483 35716483 T C NBEA Missense_Mutation p.V805A 0.36 deleterious(0.01) benign(0.097) TCGA-CG-4442-01 13 36049859 36049859 C T MAB21L1 Silent p.A139A 0.36 TCGA-CG-4442-01 13 36700166 36700166 C T DCLK1 Missense_Mutation p.A37T 0.24 deleterious(0.04) unknown(0) TCGA-CG-4442-01 13 37269461 37269461 C T SERTM1 Silent p.D82D 0.37 TCGA-CG-4442-01 13 37583392 37583392 A - EXOSC8 Frame_Shift_Del p.K264Nfs*2 0.20 TCGA-CG-4442-01 13 38160400 38160400 C T POSTN Silent p.S257S 0.33 TCGA-CG-4442-01 13 42876041 42876041 A G AKAP11 Silent p.T1053T 0.28 TCGA-CG-4442-01 13 43934001 43934001 G A ENOX1 Missense_Mutation p.A192V 0.29 deleterious(0.03) possibly_damaging(0.904) TCGA-CG-4442-01 13 46287374 46287374 G A SPERT Missense_Mutation p.A72T 0.35 tolerated_low_confidence(0.11) benign(0.032) TCGA-CG-4442-01 13 46287395 46287395 C T SPERT Missense_Mutation p.R79W 0.34 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-CG-4442-01 13 46543397 46543398 - G ZC3H13 Frame_Shift_Ins p.S1095Ffs*55 0.43 TCGA-CG-4442-01 13 46577338 46577338 T - ZC3H13 Frame_Shift_Del p.T294Qfs*70 0.36 TCGA-CG-4442-01 13 48830432 48830433 - GAA ITM2B In_Frame_Ins p.E126dup 0.22 TCGA-CG-4442-01 13 50062611 50062611 C T SETDB2 Nonsense_Mutation p.R600* 0.40 TCGA-CG-4442-01 13 51854685 51854685 A G FAM124A Missense_Mutation p.S348G 0.06 tolerated(0.07) benign(0.329) TCGA-CG-4442-01 13 52603377 52603377 T C UTP14C Missense_Mutation p.I146T 0.30 deleterious(0) benign(0.442) TCGA-CG-4442-01 13 53418897 53418897 T C PCDH8 Missense_Mutation p.Y1004C 0.05 deleterious(0) probably_damaging(0.999) TCGA-CG-4442-01 13 53420526 53420526 G A PCDH8 Silent p.P682P 0.45 TCGA-CG-4442-01 13 61987878 61987878 G T PCDH20 Silent p.S118S 0.36 TCGA-CG-4442-01 13 77672481 77672481 G A MYCBP2 Silent p.C2898C 0.37 TCGA-CG-4442-01 13 77765900 77765900 C - MYCBP2 Frame_Shift_Del p.W1291Gfs*79 0.40 TCGA-CG-4442-01 13 77900654 77900654 T A MYCBP2 Missense_Mutation p.N48I 0.34 benign(0.022) TCGA-CG-4442-01 13 78474004 78474004 T - EDNRB Frame_Shift_Del p.N485Tfs*27 0.29 TCGA-CG-4442-01 13 84453749 84453749 C T SLITRK1 Missense_Mutation p.A632T 0.29 deleterious(0.01) possibly_damaging(0.512) TCGA-CG-4442-01 13 84455314 84455314 C A SLITRK1 Missense_Mutation p.R110M 0.47 deleterious(0) probably_damaging(0.998) TCGA-CG-4442-01 13 95034795 95034795 G T GPC6 Missense_Mutation p.S427I 0.28 tolerated(0.14) benign(0.005) TCGA-CG-4442-01 13 99630097 99630097 G - DOCK9 Frame_Shift_Del p.L23Cfs*25 0.46 TCGA-CG-4442-01 14 101005631 101005631 G A BEGAIN Missense_Mutation p.R153C 0.40 deleterious(0.01) probably_damaging(0.935) TCGA-CG-4442-01 14 101347381 101347381 G A RTL1 Missense_Mutation p.H1249Y 0.42 deleterious_low_confidence(0) possibly_damaging(0.767) TCGA-CG-4442-01 14 101348236 101348236 C T RTL1 Missense_Mutation p.V964I 0.28 tolerated(0.24) probably_damaging(0.992) TCGA-CG-4442-01 14 103941357 103941357 C T MARK3 Missense_Mutation p.A431V 0.33 deleterious(0.05) benign(0.069) TCGA-CG-4442-01 14 103941521 103941521 C T MARK3 Missense_Mutation p.R486C 0.31 deleterious(0) probably_damaging(0.987) TCGA-CG-4442-01 14 104639382 104639382 T C KIF26A Missense_Mutation p.S497P 0.29 deleterious(0) possibly_damaging(0.845) TCGA-CG-4442-01 14 105206963 105206963 G A ADSSL1 Missense_Mutation p.G211R 0.37 deleterious(0) probably_damaging(1) TCGA-CG-4442-01 14 105353032 105353032 G T CEP170B Missense_Mutation p.G819V 0.18 tolerated(0.41) benign(0.002) TCGA-CG-4442-01 14 105419601 105419601 G A AHNAK2 Silent p.S729S 0.35 TCGA-CG-4442-01 14 105930432 105930432 G - MTA1 Frame_Shift_Del p.A382Rfs*49 0.41 TCGA-CG-4442-01 14 21025060 21025060 C T RNASE9 Missense_Mutation p.A62T 0.38 tolerated(1) benign(0.001) TCGA-CG-4442-01 14 21423932 21423932 T C RNASE2 Translation_Start_Site p.M1? 0.28 deleterious(0) probably_damaging(0.977) TCGA-CG-4442-01 14 22952006 22952006 T C TRAJ53 Silent p.G5G 0.30 TCGA-CG-4442-01 14 23518309 23518309 C A CDH24 Missense_Mutation p.E629D 0.36 deleterious(0.05) possibly_damaging(0.817) TCGA-CG-4442-01 14 23793531 23793531 G A PABPN1 Intron 0.35 TCGA-CG-4442-01 14 24619849 24619849 T C RNF31 Missense_Mutation p.Y414H 0.04 tolerated(0.49) benign(0.001) TCGA-CG-4442-01 14 24877215 24877215 C - NYNRIN Frame_Shift_Del p.P115Lfs*4 0.38 TCGA-CG-4442-01 14 24898055 24898055 G - CBLN3 Frame_Shift_Del p.P69Lfs*35 0.25 TCGA-CG-4442-01 14 32562545 32562545 T - ARHGAP5 Frame_Shift_Del p.F892Lfs*9 0.32 TCGA-CG-4442-01 14 32562675 32562675 T - ARHGAP5 Frame_Shift_Del p.F935Lfs*5 0.35 TCGA-CG-4442-01 14 35045035 35045035 C T SNX6 Missense_Mutation p.R295Q 0.26 deleterious(0.02) probably_damaging(0.997) TCGA-CG-4442-01 14 35227976 35227976 T C BAZ1A Silent p.Q1440Q 0.04 TCGA-CG-4442-01 14 37132606 37132606 C T PAX9 Missense_Mutation p.A170V 0.25 tolerated(0.06) benign(0.033) TCGA-CG-4442-01 14 50131378 50131378 A G POLE2 Silent p.G216G 0.36 TCGA-CG-4442-01 14 53513450 53513480 AATCAGTTTTAGGCCATTCATGTCCTTCAAG TCAGTTTTAGGCCATTCATGTCCTTCA DDHD1 3'UTR 0.29 TCGA-CG-4442-01 14 55310346 55310346 A - GCH1 3'UTR 0.43 TCGA-CG-4442-01 14 55650367 55650367 G A DLGAP5 Nonsense_Mutation p.R115* 0.33 TCGA-CG-4442-01 14 57052589 57052589 T C TMEM260 Silent p.F101F 0.37 TCGA-CG-4442-01 14 58669640 58669640 C T ACTR10 Missense_Mutation p.P49S 0.30 tolerated(0.92) benign(0.002) TCGA-CG-4442-01 14 59014755 59014755 A - KIAA0586 3'Flank 0.48 TCGA-CG-4442-01 14 61446155 61446155 G A TRMT5 Missense_Mutation p.A154V 0.37 tolerated(0.08) benign(0.028) TCGA-CG-4442-01 14 61446156 61446156 C T TRMT5 Missense_Mutation p.A154T 0.36 tolerated(0.22) benign(0.004) TCGA-CG-4442-01 14 61446523 61446523 A G TRMT5 Silent p.I31I 0.03 TCGA-CG-4442-01 14 65008542 65008542 C T HSPA2 Silent p.R325R 0.34 TCGA-CG-4442-01 14 66975274 66975274 A G GPHN Missense_Mutation p.N10S 0.05 tolerated_low_confidence(0.12) probably_damaging(0.979) TCGA-CG-4442-01 14 67745870 67745870 A G MPP5 5'UTR 0.35 TCGA-CG-4442-01 14 74179954 74179954 G A PNMA1 Missense_Mutation p.P130L 0.32 tolerated(0.43) benign(0.003) TCGA-CG-4442-01 14 75361033 75361033 C T DLST Missense_Mutation p.R231W 0.34 deleterious(0) probably_damaging(1) TCGA-CG-4442-01 14 75537864 75537864 G A ZC2HC1C Silent p.T196T 0.35 TCGA-CG-4442-01 14 75991481 75991481 G A BATF Missense_Mutation p.A40T 0.39 deleterious(0) probably_damaging(0.999) TCGA-CG-4442-01 14 76368497 76368497 G A TTLL5 Silent p.A1251A 0.37 TCGA-CG-4442-01 14 76550015 76550015 T C IFT43 3'UTR 0.12 TCGA-CG-4442-01 14 77493111 77493111 C T IRF2BPL Missense_Mutation p.R342H 0.38 tolerated(0.08) unknown(0) TCGA-CG-4442-01 14 79181267 79181267 G A NRXN3 Missense_Mutation p.C237Y 0.33 deleterious(0) probably_damaging(0.984) TCGA-CG-4442-01 14 81610680 81610680 A G TSHR Missense_Mutation p.M760V 0.21 tolerated_low_confidence(0.1) benign(0) TCGA-CG-4442-01 14 81670341 81670341 C A GTF2A1 Missense_Mutation p.Q80H 0.43 tolerated(0.58) possibly_damaging(0.601) TCGA-CG-4442-01 14 81743536 81743536 G A STON2 Silent p.L707L 0.34 TCGA-CG-4442-01 14 81837500 81837500 A G STON2 Missense_Mutation p.C135R 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.822) TCGA-CG-4442-01 14 89082573 89082574 - T EML5 Frame_Shift_Ins p.R1937Kfs*18 0.26 TCGA-CG-4442-01 14 91770131 91770131 G A CCDC88C Silent p.A1183A 0.44 TCGA-CG-4442-01 14 92597333 92597333 C T CPSF2 Missense_Mutation p.T2M 0.33 deleterious(0) probably_damaging(0.99) TCGA-CG-4442-01 14 95590985 95590985 G A DICER1 Silent p.A308A 0.05 TCGA-CG-4442-01 14 95669231 95669231 G - CLMN Frame_Shift_Del p.H819Mfs*29 0.33 TCGA-CG-4442-01 14 96797967 96797967 T C ATG2B Silent p.P492P 0.30 TCGA-CG-4442-01 15 100801716 100801716 C T ADAMTS17 Silent p.P333P 0.27 TCGA-CG-4442-01 15 102241308 102241308 G A TARSL2 Missense_Mutation p.T434M 0.29 deleterious(0) possibly_damaging(0.77) TCGA-CG-4442-01 15 20488860 20488860 G T CHEK2P2 RNA 0.12 TCGA-CG-4442-01 15 23003106 23003106 T - CYFIP1 3'UTR 0.47 TCGA-CG-4442-01 15 23811911 23811911 C T MKRN3 Missense_Mutation p.R328C 0.35 deleterious(0.03) probably_damaging(1) TCGA-CG-4442-01 15 23890382 23890382 C A MAGEL2 Missense_Mutation p.W233C 0.40 deleterious(0) probably_damaging(0.998) TCGA-CG-4442-01 15 25415941 25415941 C T SNORD115-1 RNA 0.31 TCGA-CG-4442-01 15 25601091 25601091 T C UBE3A Missense_Mutation p.Y694C 0.35 deleterious(0) benign(0.021) TCGA-CG-4442-01 15 28447365 28447365 T A HERC2 Missense_Mutation p.D2504V 0.26 benign(0.153) TCGA-CG-4442-01 15 28465618 28465618 G A HERC2 Missense_Mutation p.S1942L 0.33 benign(0.211) TCGA-CG-4442-01 15 28525215 28525215 T - HERC2 Frame_Shift_Del p.S181Vfs*85 0.37 TCGA-CG-4442-01 15 34113566 34113567 - A RYR3 Frame_Shift_Ins p.G3639Rfs*2 0.23 TCGA-CG-4442-01 15 44106833 44106834 - T MFAP1 Frame_Shift_Ins p.N161Kfs*2 0.31 TCGA-CG-4442-01 15 45008499 45008499 T - B2M Intron 0.38 TCGA-CG-4442-01 15 45410170 45410170 C T DUOXA1 Nonsense_Mutation p.W363* 0.39 TCGA-CG-4442-01 15 48433478 48433478 A - MYEF2 3'UTR 0.38 TCGA-CG-4442-01 15 49293144 49293144 G T SECISBP2L Silent p.T726T 0.37 TCGA-CG-4442-01 15 51693862 51693862 A G GLDN Missense_Mutation p.Y367C 0.05 deleterious(0.04) possibly_damaging(0.84) TCGA-CG-4442-01 15 52689455 52689455 T C MYO5A Missense_Mutation p.Q421R 0.32 tolerated(0.21) benign(0.001) TCGA-CG-4442-01 15 58925422 58925422 G A ADAM10 Silent p.H383H 0.39 TCGA-CG-4442-01 15 59146925 59146926 - T FAM63B 3'UTR 0.39 TCGA-CG-4442-01 15 62456140 62456140 G A C2CD4B Silent p.G348G 0.33 TCGA-CG-4442-01 15 66615118 66615118 G A DIS3L Missense_Mutation p.V474I 0.42 tolerated(0.52) benign(0.08) TCGA-CG-4442-01 15 69011084 69011084 C T CORO2B Missense_Mutation p.R339C 0.30 deleterious(0) probably_damaging(1) TCGA-CG-4442-01 15 72580753 72580753 T C CELF6 Missense_Mutation p.Q405R 0.39 deleterious(0) benign(0.082) TCGA-CG-4442-01 15 72968433 72968433 G A HIGD2B Silent p.L95L 0.33 TCGA-CG-4442-01 15 74032759 74032759 A G C15orf59 Silent p.G127G 0.40 TCGA-CG-4442-01 15 74235283 74235285 GGA - LOXL1 In_Frame_Del p.E399del 0.52 TCGA-CG-4442-01 15 74573063 74573063 C T CCDC33 Missense_Mutation p.P315L 0.32 deleterious(0) probably_damaging(0.96) TCGA-CG-4442-01 15 75557759 75557759 G A GOLGA6C Silent p.S251S 0.18 TCGA-CG-4442-01 15 79606185 79606185 C T TMED3 Silent p.Y85Y 0.38 TCGA-CG-4442-01 15 82336563 82336563 G A MEX3B Silent p.R216R 0.33 TCGA-CG-4442-01 15 83349406 83349406 G A AP3B2 Silent p.P291P 0.50 TCGA-CG-4442-01 15 83657726 83657727 - T C15orf40 3'Flank 0.33 TCGA-CG-4442-01 15 84488696 84488696 A G ADAMTSL3 Missense_Mutation p.H166R 0.30 tolerated(0.06) benign(0.008) TCGA-CG-4442-01 15 89169602 89169602 C T AEN Silent p.S54S 0.40 TCGA-CG-4442-01 15 89719194 89719194 C T ABHD2 Silent p.C230C 0.36 TCGA-CG-4442-01 15 90446505 90446505 C T C15orf38-AP3S2 Silent p.S205S 0.36 TCGA-CG-4442-01 15 90794020 90794020 C A TTLL13 Missense_Mutation p.P53H 0.34 deleterious_low_confidence(0) possibly_damaging(0.605) TCGA-CG-4442-01 15 90903582 90903582 C T ZNF774 Silent p.H173H 0.37 TCGA-CG-4442-01 15 90904694 90904694 G A ZNF774 3'UTR 0.64 TCGA-CG-4442-01 15 91425070 91425070 G A FURIN Missense_Mutation p.E783K 0.38 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-CG-4442-01 16 11141159 11141159 T - CLEC16A Frame_Shift_Del p.L611Wfs*11 0.33 TCGA-CG-4442-01 16 11792005 11792005 G A TXNDC11 Silent p.A361A 0.33 TCGA-CG-4442-01 16 1292327 1292327 G A TPSAB1 3'UTR 0.33 TCGA-CG-4442-01 16 1374749 1374749 C T UBE2I Silent p.Y144Y 0.39 TCGA-CG-4442-01 16 1399497 1399497 C - TSR3 Frame_Shift_Del p.A294Lfs*28 0.45 TCGA-CG-4442-01 16 16165586 16165587 - GT ABCC1 Frame_Shift_Ins 0.36 TCGA-CG-4442-01 16 1797263 1797263 C T MAPK8IP3 Silent p.R326R 0.22 TCGA-CG-4442-01 16 1961936 1961936 G A HS3ST6 Silent p.Y197Y 0.33 TCGA-CG-4442-01 16 20043388 20043389 - G GPR139 Frame_Shift_Ins p.R244Pfs*75 0.39 TCGA-CG-4442-01 16 2026277 2026277 C T TBL3 Silent p.S418S 0.32 TCGA-CG-4442-01 16 20491904 20491904 G A ACSM2A Missense_Mutation p.D431N 0.40 deleterious(0.02) benign(0.008) TCGA-CG-4442-01 16 20556548 20556548 G - ACSM2B Frame_Shift_Del p.G405Afs*16 0.30 TCGA-CG-4442-01 16 21123071 21123071 C T DNAH3 Missense_Mutation p.V659M 0.33 deleterious(0.02) probably_damaging(0.978) TCGA-CG-4442-01 16 21262269 21262270 GA - ANKS4B 3'UTR 0.39 TCGA-CG-4442-01 16 2131669 2131669 G A TSC2 Silent p.L1228L 0.36 TCGA-CG-4442-01 16 2136307 2136307 G A TSC2 Silent p.V1592V 0.39 TCGA-CG-4442-01 16 21848597 21848597 C T NPIPB4 Missense_Mutation p.E371K 0.17 benign(0.387) TCGA-CG-4442-01 16 21974140 21974140 G A UQCRC2 Missense_Mutation p.E150K 0.36 deleterious(0.03) possibly_damaging(0.827) TCGA-CG-4442-01 16 2225924 2225927 TGTC - TRAF7 Frame_Shift_Del p.C574Afs*59 0.37 TCGA-CG-4442-01 16 22291579 22291579 T C EEF2K Silent p.C650C 0.06 TCGA-CG-4442-01 16 2259357 2259357 G T MLST8 3'UTR 0.39 TCGA-CG-4442-01 16 2260588 2260588 G C BRICD5 Missense_Mutation p.L39V 0.53 tolerated(0.24) benign(0.115) TCGA-CG-4442-01 16 23701317 23701317 A G PLK1 Missense_Mutation p.Y582C 0.25 deleterious(0) probably_damaging(0.914) TCGA-CG-4442-01 16 23702743 23702743 C T ERN2 Missense_Mutation p.V842I 0.30 tolerated(0.08) benign(0.156) TCGA-CG-4442-01 16 23718096 23718096 G - ERN2 Frame_Shift_Del p.R204Afs*43 0.28 TCGA-CG-4442-01 16 239408 239408 G A LUC7L Intron 0.32 TCGA-CG-4442-01 16 24803029 24803029 G T TNRC6A Missense_Mutation p.W1022C 0.37 deleterious(0) probably_damaging(0.999) TCGA-CG-4442-01 16 24815588 24815588 G A TNRC6A Missense_Mutation p.R1262Q 0.38 deleterious(0) probably_damaging(0.997) TCGA-CG-4442-01 16 24817552 24817552 C T TNRC6A Missense_Mutation p.A1426V 0.29 tolerated(0.35) benign(0.001) TCGA-CG-4442-01 16 24942337 24942337 G - ARHGAP17 Frame_Shift_Del p.S762Vfs*5 0.36 TCGA-CG-4442-01 16 27232030 27232030 G T KDM8 Silent p.S448S 0.34 TCGA-CG-4442-01 16 277242 277242 G A LUC7L Missense_Mutation p.T52M 0.28 deleterious(0) probably_damaging(0.997) TCGA-CG-4442-01 16 28508985 28508985 G - APOBR Frame_Shift_Del p.L877Ffs*2 0.33 TCGA-CG-4442-01 16 2906205 2906205 G A PRSS22 Silent p.G53G 0.35 TCGA-CG-4442-01 16 2987260 2987260 G T FLYWCH1 Missense_Mutation p.R550L 0.56 deleterious(0) probably_damaging(0.996) TCGA-CG-4442-01 16 30409310 30409310 C - ZNF48 Frame_Shift_Del p.R249Dfs*43 0.33 TCGA-CG-4442-01 16 30543818 30543818 C T ZNF747 3'UTR 0.21 TCGA-CG-4442-01 16 30727398 30727398 T - SRCAP Frame_Shift_Del p.L837Yfs*46 0.30 TCGA-CG-4442-01 16 30750430 30750430 C T SRCAP Silent p.P3023P 0.34 TCGA-CG-4442-01 16 30899222 30899223 - G BCL7C Frame_Shift_Ins p.L207Tfs*10 0.34 TCGA-CG-4442-01 16 31151942 31151942 G - PRSS36 Frame_Shift_Del p.L680Wfs*6 0.38 TCGA-CG-4442-01 16 31499991 31499991 C T SLC5A2 Missense_Mutation p.S393L 0.36 deleterious(0) probably_damaging(0.999) TCGA-CG-4442-01 16 3169648 3169648 G A ZNF205 Silent p.T329T 0.37 TCGA-CG-4442-01 16 3191136 3191136 G A ZNF213 Missense_Mutation p.D390N 0.33 tolerated(0.32) benign(0) TCGA-CG-4442-01 16 3293377 3293377 C T MEFV Missense_Mutation p.V704I 0.35 tolerated(1) benign(0.002) TCGA-CG-4442-01 16 3304678 3304678 G A MEFV Silent p.N130N 0.34 TCGA-CG-4442-01 16 3434756 3434756 G T ZSCAN32 Missense_Mutation p.L101I 0.33 deleterious(0.01) benign(0.152) TCGA-CG-4442-01 16 4409528 4409528 G T CORO7 Missense_Mutation p.L735M 0.36 tolerated(0.26) possibly_damaging(0.848) TCGA-CG-4442-01 16 46696158 46696158 C A VPS35 Missense_Mutation p.E688D 0.33 tolerated(0.19) benign(0.006) TCGA-CG-4442-01 16 4861222 4861222 C T GLYR1 Silent p.A512A 0.35 TCGA-CG-4442-01 16 5123189 5123189 G A ALG1 Missense_Mutation p.V108I 0.28 tolerated(0.97) benign(0.002) TCGA-CG-4442-01 16 54319087 54319087 C - IRX3 Frame_Shift_Del p.E236Rfs*24 0.35 TCGA-CG-4442-01 16 55363169 55363169 T C IRX6 Missense_Mutation p.C427R 0.28 deleterious(0.01) possibly_damaging(0.828) TCGA-CG-4442-01 16 56396514 56396514 C T AMFR 3'UTR 0.33 TCGA-CG-4442-01 16 56501170 56501170 C - OGFOD1 Frame_Shift_Del p.I253Yfs*43 0.11 TCGA-CG-4442-01 16 56643249 56643249 T C MT2A Missense_Mutation p.C57R 0.05 deleterious(0.03) possibly_damaging(0.712) TCGA-CG-4442-01 16 57067548 57067548 G T NLRC5 Missense_Mutation p.R837M 0.21 deleterious(0) possibly_damaging(0.76) TCGA-CG-4442-01 16 57416105 57416105 G - CX3CL1 Frame_Shift_Del p.G120Efs*42 0.48 TCGA-CG-4442-01 16 58537631 58537631 G A NDRG4 Intron 0.44 TCGA-CG-4442-01 16 58619303 58619303 T C CNOT1 Missense_Mutation p.T249A 0.04 tolerated(0.63) benign(0.002) TCGA-CG-4442-01 16 64981761 64981761 G A CDH11 Silent p.P712P 0.27 TCGA-CG-4442-01 16 66643409 66643409 G A CMTM3 Silent p.S125S 0.33 TCGA-CG-4442-01 16 66880978 66880978 G A CA7 Missense_Mutation p.R29H 0.31 tolerated(0.08) probably_damaging(0.991) TCGA-CG-4442-01 16 67040713 67040713 C T CES4A Intron 0.36 TCGA-CG-4442-01 16 67221443 67221443 C T EXOC3L1 Missense_Mutation p.R242Q 0.41 deleterious(0.02) benign(0.166) TCGA-CG-4442-01 16 67314806 67314806 G A PLEKHG4 Missense_Mutation p.R206Q 0.31 deleterious(0) probably_damaging(0.996) TCGA-CG-4442-01 16 67470195 67470195 A C HSD11B2 Missense_Mutation p.K236N 0.34 deleterious(0) probably_damaging(0.997) TCGA-CG-4442-01 16 67477028 67477028 C T ATP6V0D1 Missense_Mutation p.E179K 0.34 deleterious(0) probably_damaging(0.998) TCGA-CG-4442-01 16 676026 676026 C A RAB40C Missense_Mutation p.P157H 0.33 deleterious(0) probably_damaging(0.999) TCGA-CG-4442-01 16 67670738 67670738 G A CTCF Silent p.Q661Q 0.03 TCGA-CG-4442-01 16 67943103 67943103 C T PSKH1 Missense_Mutation p.R151C 0.38 deleterious(0.04) probably_damaging(0.998) TCGA-CG-4442-01 16 68279440 68279440 C - PLA2G15 Frame_Shift_Del p.P39Qfs*39 0.37 TCGA-CG-4442-01 16 68308738 68308738 G A SLC7A6 Missense_Mutation p.E37K 0.33 tolerated(0.11) benign(0.063) TCGA-CG-4442-01 16 68405541 68405541 C T SMPD3 Missense_Mutation p.A182T 0.32 deleterious(0.04) probably_damaging(0.935) TCGA-CG-4442-01 16 69143627 69143627 G A HAS3 Missense_Mutation p.R110H 0.38 tolerated(0.14) benign(0.233) TCGA-CG-4442-01 16 69317980 69317980 C - SNTB2 Frame_Shift_Del p.S395Pfs*48 0.34 TCGA-CG-4442-01 16 69404408 69404408 T C TERF2 Missense_Mutation p.D231G 0.39 deleterious(0.02) benign(0.196) TCGA-CG-4442-01 16 69419616 69419616 C - TERF2 Frame_Shift_Del p.E45Rfs*72 0.30 TCGA-CG-4442-01 16 70517769 70517769 C T COG4 Missense_Mutation p.R605Q 0.42 tolerated(0.12) benign(0.001) TCGA-CG-4442-01 16 70590798 70590798 C A SF3B3 Missense_Mutation p.Q626K 0.05 tolerated(0.1) benign(0.071) TCGA-CG-4442-01 16 715973 715973 C - WDR90 Frame_Shift_Del p.P1488Rfs*11 0.33 TCGA-CG-4442-01 16 72143405 72143405 G A DHX38 Missense_Mutation p.R1158Q 0.45 tolerated(0.38) benign(0.241) TCGA-CG-4442-01 16 74706317 74706317 C T MLKL 3'UTR 0.05 TCGA-CG-4442-01 16 77356327 77356327 T C ADAMTS18 Missense_Mutation p.N690S 0.37 deleterious(0.03) benign(0.017) TCGA-CG-4442-01 16 81056405 81056406 - T CENPN Intron 0.32 TCGA-CG-4442-01 16 84067036 84067036 G A SLC38A8 Nonsense_Mutation p.Q143* 0.31 TCGA-CG-4442-01 16 84126839 84126839 G A MBTPS1 Missense_Mutation p.A267V 0.21 deleterious(0) probably_damaging(0.996) TCGA-CG-4442-01 16 85010039 85010039 G - ZDHHC7 Frame_Shift_Del p.S317Hfs*5 0.37 TCGA-CG-4442-01 16 89383423 89383423 G A ANKRD11 Missense_Mutation p.P2L 0.39 probably_damaging(0.981) TCGA-CG-4442-01 16 89616910 89616910 A - SPG7 Frame_Shift_Del p.K559Rfs*33 0.31 TCGA-CG-4442-01 16 89857811 89857811 C A FANCA Missense_Mutation p.K453N 0.43 deleterious(0) benign(0.403) TCGA-CG-4442-01 16 89999011 89999011 C T TUBB3 Silent p.I30I 0.20 TCGA-CG-4442-01 16 90001305 90001305 C T TUBB3 Missense_Mutation p.T149M 0.37 deleterious_low_confidence(0) probably_damaging(1) TCGA-CG-4442-01 17 10532979 10532979 C T MYH3 Missense_Mutation p.A1911T 0.32 deleterious(0) probably_damaging(0.994) TCGA-CG-4442-01 17 10533718 10533718 G A MYH3 Missense_Mutation p.R1782W 0.32 deleterious(0) possibly_damaging(0.859) TCGA-CG-4442-01 17 10535909 10535909 G A MYH3 Missense_Mutation p.R1614W 0.33 deleterious(0.02) possibly_damaging(0.544) TCGA-CG-4442-01 17 10542774 10542774 C A MYH3 Missense_Mutation p.E981D 0.38 tolerated(0.08) benign(0.005) TCGA-CG-4442-01 17 12655775 12655775 G A MYOCD Silent p.V390V 0.36 TCGA-CG-4442-01 17 12888089 12888089 G A ARHGAP44 Silent p.R727R 0.30 TCGA-CG-4442-01 17 15134228 15134228 G T PMP22 3'UTR 0.29 TCGA-CG-4442-01 17 16526349 16526349 G A ZNF624 Silent p.C617C 0.35 TCGA-CG-4442-01 17 16725564 16725564 A G AC022596.6 RNA 0.22 TCGA-CG-4442-01 17 16735049 16735049 T C KRT16P2 RNA 0.21 TCGA-CG-4442-01 17 16831074 16831074 C T TBC1D27 RNA 0.35 TCGA-CG-4442-01 17 17480330 17480330 G A PEMT Silent p.C36C 0.41 TCGA-CG-4442-01 17 17701059 17701059 G A RAI1 Silent p.V1599V 0.41 TCGA-CG-4442-01 17 18053803 18053803 G T MYO15A Missense_Mutation p.G2425C 0.28 unknown(0) TCGA-CG-4442-01 17 18181552 18181552 C G TOP3A Missense_Mutation p.G755A 0.43 tolerated(0.33) benign(0.002) TCGA-CG-4442-01 17 2227356 2227356 A - SRR 3'UTR 0.25 TCGA-CG-4442-01 17 2282378 2282378 C T SGSM2 Missense_Mutation p.A983V 0.36 deleterious(0) probably_damaging(0.913) TCGA-CG-4442-01 17 2323528 2323528 C A METTL16 Missense_Mutation p.E475D 0.06 tolerated_low_confidence(0.36) benign(0.002) TCGA-CG-4442-01 17 25935009 25935009 G A KSR1 Silent p.T573T 0.43 TCGA-CG-4442-01 17 26961642 26961642 A G KIAA0100 Missense_Mutation p.V988A 0.03 tolerated(0.08) benign(0.04) TCGA-CG-4442-01 17 27296914 27296914 C - SEZ6 Frame_Shift_Del p.P306Lfs*27 0.36 TCGA-CG-4442-01 17 28030050 28030050 A G SSH2 Silent p.G46G 0.32 TCGA-CG-4442-01 17 29553477 29553478 - C NF1 Frame_Shift_Ins p.I679Dfs*21 0.52 TCGA-CG-4442-01 17 2966340 2966340 C T OR1D5 Missense_Mutation p.A188T 0.08 deleterious(0.03) benign(0.075) TCGA-CG-4442-01 17 29761110 29761110 C T RAB11FIP4 Silent p.C102C 0.12 TCGA-CG-4442-01 17 30771615 30771615 A T PSMD11 Missense_Mutation p.D25V 0.42 tolerated(0.17) benign(0.096) TCGA-CG-4442-01 17 32953298 32953298 C T TMEM132E Nonsense_Mutation p.Q74* 0.48 TCGA-CG-4442-01 17 33319045 33319045 C T LIG3 Missense_Mutation p.A426V 0.37 tolerated(0.06) possibly_damaging(0.74) TCGA-CG-4442-01 17 33454302 33454302 A G FNDC8 Missense_Mutation p.R151G 0.04 tolerated_low_confidence(0.63) benign(0.001) TCGA-CG-4442-01 17 33768996 33768996 C - SLFN13 Frame_Shift_Del p.G503Afs*15 0.23 TCGA-CG-4442-01 17 3417934 3417934 G A TRPV3 Missense_Mutation p.T744M 0.41 deleterious(0.01) probably_damaging(0.995) TCGA-CG-4442-01 17 34941792 34941792 T C GGNBP2 Silent p.T426T 0.40 TCGA-CG-4442-01 17 35300395 35300395 C - LHX1 Frame_Shift_Del p.E399Kfs*2 0.29 TCGA-CG-4442-01 17 35518796 35518796 G A ACACA Missense_Mutation p.R1750C 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-CG-4442-01 17 3560021 3560021 G A CTNS Missense_Mutation p.D205N 0.39 deleterious(0) probably_damaging(0.981) TCGA-CG-4442-01 17 36707452 36707452 G - SRCIN1 Frame_Shift_Del p.K968Rfs*23 0.52 TCGA-CG-4442-01 17 36991392 36991392 A G C17orf98 3'UTR 0.28 TCGA-CG-4442-01 17 37627441 37627441 A G CDK12 Silent p.K452K 0.04 TCGA-CG-4442-01 17 37667883 37667883 G T CDK12 Missense_Mutation p.G923V 0.29 probably_damaging(1) TCGA-CG-4442-01 17 38421184 38421184 T G WIPF2 Silent p.P252P 0.34 TCGA-CG-4442-01 17 38788517 38788517 A T SMARCE1 Missense_Mutation p.V215D 0.23 tolerated(0.06) possibly_damaging(0.543) TCGA-CG-4442-01 17 39296353 39296353 G A KRTAP4-6 Silent p.C129C 0.29 TCGA-CG-4442-01 17 39502761 39502761 G A KRT33A Missense_Mutation p.R346W 0.35 deleterious(0.01) probably_damaging(0.989) TCGA-CG-4442-01 17 39881315 39881315 C - HAP1 Frame_Shift_Del p.E500Kfs*27 0.34 TCGA-CG-4442-01 17 40467787 40467787 C T STAT3 Silent p.S763S 0.28 TCGA-CG-4442-01 17 40575031 40575031 C T PTRF Missense_Mutation p.A29T 0.24 tolerated(0.59) probably_damaging(0.981) TCGA-CG-4442-01 17 40822025 40822025 G A PLEKHH3 Nonsense_Mutation p.R642* 0.45 TCGA-CG-4442-01 17 40940391 40940391 G A WNK4 Missense_Mutation p.R669Q 0.09 deleterious(0.04) unknown(0) TCGA-CG-4442-01 17 41234588 41234588 C A BRCA1 Missense_Mutation p.R1397M 0.28 deleterious(0) probably_damaging(0.996) TCGA-CG-4442-01 17 41244577 41244577 T G BRCA1 Missense_Mutation p.K991Q 0.37 deleterious(0) probably_damaging(0.94) TCGA-CG-4442-01 17 41477713 41477713 C - ARL4D 3'UTR 0.53 TCGA-CG-4442-01 17 43334552 43334552 G A SPATA32 Silent p.C12C 0.28 TCGA-CG-4442-01 17 43545824 43545824 C A PLEKHM1 Missense_Mutation p.E353D 0.39 tolerated(0.72) benign(0.001) TCGA-CG-4442-01 17 44101592 44101592 A - MAPT 3'UTR 0.35 TCGA-CG-4442-01 17 44109601 44109601 G - KANSL1 Frame_Shift_Del p.Q968Sfs*46 0.37 TCGA-CG-4442-01 17 44952494 44952494 C T WNT9B Missense_Mutation p.A121V 0.37 deleterious(0) probably_damaging(0.947) TCGA-CG-4442-01 17 45924731 45924731 G A SP6 Silent p.G355G 0.30 TCGA-CG-4442-01 17 4804184 4804184 G A CHRNE Missense_Mutation p.T274M 0.30 deleterious(0) probably_damaging(0.97) TCGA-CG-4442-01 17 48148781 48148781 G T ITGA3 Missense_Mutation p.Q286H 0.34 tolerated(0.12) benign(0.016) TCGA-CG-4442-01 17 48356598 48356598 C - TMEM92 Frame_Shift_Del p.P138Lfs*86 0.30 TCGA-CG-4442-01 17 5049342 5049342 C A USP6 Missense_Mutation p.P731H 0.05 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-CG-4442-01 17 5086206 5086206 C T ZNF594 Missense_Mutation p.R449K 0.36 tolerated(0.98) benign(0.271) TCGA-CG-4442-01 17 53345288 53345288 C - HLF Frame_Shift_Del p.S100Afs*106 0.39 TCGA-CG-4442-01 17 5456824 5456824 G T NLRP1 Missense_Mutation p.L804I 0.32 tolerated(0.14) benign(0.209) TCGA-CG-4442-01 17 56382987 56382987 G A BZRAP1 Missense_Mutation p.P1759S 0.51 tolerated(0.95) benign(0.001) TCGA-CG-4442-01 17 57752157 57752157 T C CLTC Silent p.G838G 0.34 TCGA-CG-4442-01 17 62818039 62818039 C T RNU7-115P 3'Flank 0.28 TCGA-CG-4442-01 17 62856785 62856785 T - LRRC37A3 Frame_Shift_Del p.N1160Tfs*5 0.36 TCGA-CG-4442-01 17 6337403 6337403 G A AIPL1 Missense_Mutation p.R38C 0.48 deleterious(0.03) probably_damaging(0.99) TCGA-CG-4442-01 17 63687 63688 - G RPH3AL Frame_Shift_Ins p.A302Rfs*3 0.26 TCGA-CG-4442-01 17 64881122 64881122 A G CACNG5 Missense_Mutation p.Y198C 0.30 tolerated(0.08) probably_damaging(0.989) TCGA-CG-4442-01 17 65103454 65103454 T C HELZ Missense_Mutation p.N1691S 0.28 tolerated_low_confidence(0.27) unknown(0) TCGA-CG-4442-01 17 65905705 65905705 T C BPTF Silent p.N940N 0.29 TCGA-CG-4442-01 17 67186554 67186554 T C ABCA10 Silent p.T692T 0.36 TCGA-CG-4442-01 17 67189694 67189694 T - ABCA10 Frame_Shift_Del p.K527Nfs*2 0.35 TCGA-CG-4442-01 17 67309411 67309412 - A ABCA5 Frame_Shift_Ins p.L43Ffs*8 0.29 TCGA-CG-4442-01 17 685454 685454 T C GLOD4 Silent p.G14G 0.27 TCGA-CG-4442-01 17 6945418 6945418 G A SLC16A11 Silent p.F361F 0.36 TCGA-CG-4442-01 17 71197647 71197647 G A COG1 Missense_Mutation p.A561T 0.36 tolerated(0.2) benign(0.067) TCGA-CG-4442-01 17 71389790 71389790 G A SDK2 Silent p.Y1269Y 0.32 TCGA-CG-4442-01 17 72576253 72576253 C A CD300LD Splice_Site p.X158_splice 0.33 TCGA-CG-4442-01 17 72832458 72832458 A G TMEM104 Missense_Mutation p.T375A 0.05 deleterious(0) probably_damaging(0.98) TCGA-CG-4442-01 17 729260 729260 G A NXN Missense_Mutation p.A140V 0.27 deleterious(0.01) possibly_damaging(0.666) TCGA-CG-4442-01 17 7346143 7346143 A G FGF11 Intron 0.38 TCGA-CG-4442-01 17 73625328 73625328 C - RECQL5 Frame_Shift_Del p.S727Pfs*27 0.44 TCGA-CG-4442-01 17 74072970 74072970 G A GALR2 Missense_Mutation p.A208T 0.41 tolerated(0.19) benign(0.037) TCGA-CG-4442-01 17 74077588 74077588 C - EXOC7 3'Flank 0.41 TCGA-CG-4442-01 17 74557778 74557778 T C ST6GALNAC2 3'Flank 0.24 TCGA-CG-4442-01 17 75196727 75196727 C T SEC14L1 Silent p.Y327Y 0.31 TCGA-CG-4442-01 17 76073380 76073380 G A TNRC6C Missense_Mutation p.G1056R 0.36 deleterious(0.02) probably_damaging(1) TCGA-CG-4442-01 17 76525771 76525771 G A DNAH17 Missense_Mutation p.A1097V 0.35 benign(0.003) TCGA-CG-4442-01 17 7681430 7681430 G A DNAH2 Silent p.T1761T 0.45 TCGA-CG-4442-01 17 76816009 76816009 T C USP36 Intron 0.37 TCGA-CG-4442-01 17 7701025 7701025 A G DNAH2 Missense_Mutation p.Y2703C 0.36 probably_damaging(0.999) TCGA-CG-4442-01 17 7750533 7750533 C - KDM6B Frame_Shift_Del p.P342Qfs*145 0.41 TCGA-CG-4442-01 17 7827318 7827318 G A KCNAB3 Nonsense_Mutation p.R299* 0.53 TCGA-CG-4442-01 17 78341838 78341838 G A RNF213 Missense_Mutation p.C4017Y 0.29 probably_damaging(1) TCGA-CG-4442-01 17 79171622 79171622 C T AZI1 Missense_Mutation p.E513K 0.39 deleterious(0.01) benign(0.114) TCGA-CG-4442-01 17 79983283 79983283 G - LRRC45 Frame_Shift_Del p.G189Afs*5 0.26 TCGA-CG-4442-01 17 8050660 8050660 C T PER1 Missense_Mutation p.G513S 0.07 tolerated(0.1) benign(0.216) TCGA-CG-4442-01 17 8050889 8050889 G - PER1 Frame_Shift_Del p.L466* 0.37 TCGA-CG-4442-01 17 8051007 8051007 C T PER1 Missense_Mutation p.R458H 0.44 deleterious(0) probably_damaging(1) TCGA-CG-4442-01 17 80617530 80617530 C T RAB40B Missense_Mutation p.V90M 0.21 deleterious(0) probably_damaging(1) TCGA-CG-4442-01 17 80861316 80861316 A G TBCD Missense_Mutation p.N589S 0.30 deleterious(0) possibly_damaging(0.611) TCGA-CG-4442-01 17 8192560 8192560 C T SLC25A35 3'UTR 0.30 TCGA-CG-4442-01 17 8390804 8390804 C T MYH10 Missense_Mutation p.E1665K 0.38 possibly_damaging(0.656) TCGA-CG-4442-01 17 8660792 8660792 C T SPDYE4 Missense_Mutation p.S43N 0.24 tolerated(0.08) benign(0.213) TCGA-CG-4442-01 17 8700779 8700779 A G MFSD6L Missense_Mutation p.S554P 0.18 deleterious(0) probably_damaging(0.966) TCGA-CG-4442-01 17 9515752 9515752 A G WDR16 Missense_Mutation p.I327M 0.31 tolerated(0.07) benign(0.06) TCGA-CG-4442-01 17 9631968 9631968 T C USP43 Silent p.N1011N 0.40 TCGA-CG-4442-01 17 9684848 9684848 C T DHRS7C Missense_Mutation p.R73K 0.25 tolerated(1) benign(0.001) TCGA-CG-4442-01 18 10671476 10671476 A - PIEZO2 3'Flank 0.35 TCGA-CG-4442-01 18 117217 117217 C - ROCK1P1 RNA 0.45 TCGA-CG-4442-01 18 12277323 12277323 A G CIDEA 3'UTR 0.34 TCGA-CG-4442-01 18 18533679 18533679 T - ROCK1 Frame_Shift_Del p.K1307Nfs*3 0.27 TCGA-CG-4442-01 18 21912999 21912999 T C OSBPL1A Missense_Mutation p.T178A 0.35 deleterious(0.03) probably_damaging(0.999) TCGA-CG-4442-01 18 22806757 22806757 C T ZNF521 Silent p.P375P 0.26 TCGA-CG-4442-01 18 23758861 23758861 C T PSMA8 Missense_Mutation p.A188V 0.44 tolerated(0.26) benign(0.011) TCGA-CG-4442-01 18 265348 265348 T - THOC1 Frame_Shift_Del p.K48Nfs*12 0.31 TCGA-CG-4442-01 18 28710426 28710426 A G DSC1 3'UTR 0.04 TCGA-CG-4442-01 18 29264301 29264301 T C B4GALT6 Missense_Mutation p.Y30C 0.38 deleterious(0) probably_damaging(0.999) TCGA-CG-4442-01 18 30092706 30092706 A G WBP11P1 RNA 0.39 TCGA-CG-4442-01 18 30350456 30350456 G A KLHL14 Silent p.C33C 0.32 TCGA-CG-4442-01 18 3255845 3255845 A - MYL12A Frame_Shift_Del p.K150Rfs*13 0.41 TCGA-CG-4442-01 18 33795823 33795823 C T MOCOS Silent p.V560V 0.36 TCGA-CG-4442-01 18 34853109 34853109 C T CELF4 Silent p.A273A 0.28 TCGA-CG-4442-01 18 35145576 35145576 T C CELF4 Missense_Mutation p.N10S 0.32 deleterious_low_confidence(0.03) probably_damaging(0.977) TCGA-CG-4442-01 18 43459143 43459143 A - EPG5 Frame_Shift_Del p.Y1902Ifs*26 0.34 TCGA-CG-4442-01 18 43535048 43535048 C - EPG5 Frame_Shift_Del p.G107Efs*26 0.30 TCGA-CG-4442-01 18 44560392 44560392 T C TCEB3B Missense_Mutation p.N415S 0.03 tolerated(0.45) benign(0.235) TCGA-CG-4442-01 18 46385824 46385824 G A CTIF Missense_Mutation p.R566Q 0.34 deleterious(0.04) probably_damaging(0.946) TCGA-CG-4442-01 18 47110076 47110076 A G LIPG Silent p.Q436Q 0.19 TCGA-CG-4442-01 18 47803030 47803030 A G MBD1 Splice_Site p.X159_splice 0.41 TCGA-CG-4442-01 18 57020469 57020469 G A LMAN1 Nonsense_Mutation p.R202* 0.32 TCGA-CG-4442-01 18 60035961 60035961 A G TNFRSF11A Missense_Mutation p.T271A 0.32 tolerated(0.29) benign(0.002) TCGA-CG-4442-01 18 61067280 61067280 C T VPS4B Splice_Site p.X264_splice 0.29 TCGA-CG-4442-01 18 61652328 61652328 A - SERPINB8 Frame_Shift_Del p.K192Rfs*5 0.34 TCGA-CG-4442-01 18 63529940 63529940 C T CDH7 Missense_Mutation p.R551W 0.33 deleterious(0.01) probably_damaging(0.969) TCGA-CG-4442-01 18 66678242 66678242 T A CCDC102B Silent p.T445T 0.06 TCGA-CG-4442-01 18 67755348 67755348 C T RTTN Silent p.L1393L 0.29 TCGA-CG-4442-01 18 72998443 72998443 C - TSHZ1 Frame_Shift_Del p.C318Afs*14 0.39 TCGA-CG-4442-01 18 77470424 77470424 C T CTDP1 Missense_Mutation p.T284M 0.35 deleterious(0.04) probably_damaging(0.997) TCGA-CG-4442-01 18 8824732 8824732 G A SOGA2 Missense_Mutation p.R1075H 0.42 deleterious(0.01) probably_damaging(1) TCGA-CG-4442-01 19 10132068 10132068 G T RDH8 Missense_Mutation p.R245M 0.31 tolerated(0.06) benign(0.098) TCGA-CG-4442-01 19 10160712 10160712 C T C3P1 RNA 0.27 TCGA-CG-4442-01 19 10568615 10568615 C T PDE4A Missense_Mutation p.A313V 0.31 tolerated(0.1) benign(0.004) TCGA-CG-4442-01 19 10746171 10746171 G A SLC44A2 Missense_Mutation p.A405T 0.32 tolerated(0.16) benign(0.032) TCGA-CG-4442-01 19 10943855 10943855 C T DNM2 3'Flank 0.35 TCGA-CG-4442-01 19 11040108 11040108 C T C19orf52 Silent p.R171R 0.40 TCGA-CG-4442-01 19 11446376 11446376 G A RAB3D Silent p.I104I 0.35 TCGA-CG-4442-01 19 11488473 11488473 A - EPOR 3'UTR 0.94 TCGA-CG-4442-01 19 11537809 11537809 C T CCDC151 Missense_Mutation p.A166T 0.37 deleterious(0.02) benign(0.22) TCGA-CG-4442-01 19 11658614 11658614 G A CNN1 Silent p.A131A 0.29 TCGA-CG-4442-01 19 1231206 1231206 C - C19orf26 Frame_Shift_Del p.D350Mfs*40 0.45 TCGA-CG-4442-01 19 12383962 12383962 A G ZNF44 Missense_Mutation p.C418R 0.36 deleterious(0) probably_damaging(0.999) TCGA-CG-4442-01 19 12503015 12503015 C T ZNF799 Missense_Mutation p.R66H 0.29 tolerated(1) benign(0) TCGA-CG-4442-01 19 13008601 13008601 G - GCDH Frame_Shift_Del p.N392Mfs*9 0.49 TCGA-CG-4442-01 19 13249039 13249039 G A NACC1 Missense_Mutation p.R468H 0.40 deleterious(0.02) benign(0.262) TCGA-CG-4442-01 19 13346469 13346469 T C CACNA1A Missense_Mutation p.T1676A 0.38 benign(0.018) TCGA-CG-4442-01 19 13373629 13373629 T - CACNA1A Frame_Shift_Del p.D1337Tfs*34 0.45 TCGA-CG-4442-01 19 14029367 14029367 C A CC2D1A Silent p.L308L 0.31 TCGA-CG-4442-01 19 14034390 14034390 C T CC2D1A Silent p.T598T 0.36 TCGA-CG-4442-01 19 1430254 1430254 C - DAZAP1 Frame_Shift_Del p.P257Rfs*78 0.38 TCGA-CG-4442-01 19 14582559 14582559 C T PKN1 Missense_Mutation p.A937V 0.33 tolerated(0.51) benign(0.003) TCGA-CG-4442-01 19 14593766 14593766 C T GIPC1 Missense_Mutation p.R8Q 0.30 tolerated_low_confidence(0.06) benign(0.054) TCGA-CG-4442-01 19 14772873 14772873 T C EMR3 Missense_Mutation p.Y86C 0.04 tolerated(0.18) benign(0.025) TCGA-CG-4442-01 19 15281319 15281319 A C NOTCH3 Missense_Mutation p.L1646R 0.31 deleterious(0.02) possibly_damaging(0.613) TCGA-CG-4442-01 19 15648443 15648443 G T CYP4F22 Missense_Mutation p.K173N 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-CG-4442-01 19 16000362 16000362 C T CYP4F2 Silent p.V263V 0.34 TCGA-CG-4442-01 19 16060359 16060359 A G OR10H4 Missense_Mutation p.H181R 0.34 deleterious(0.02) benign(0.247) TCGA-CG-4442-01 19 1828587 1828587 G A REXO1 Silent p.P67P 0.44 TCGA-CG-4442-01 19 1854753 1854753 C T KLF16 Missense_Mutation p.R155H 0.35 deleterious(0) probably_damaging(0.996) TCGA-CG-4442-01 19 18649226 18649226 G - FKBP8 Frame_Shift_Del p.P191Rfs*9 0.32 TCGA-CG-4442-01 19 19232368 19232368 C T TMEM161A Missense_Mutation p.A256T 0.47 deleterious(0) probably_damaging(0.967) TCGA-CG-4442-01 19 20133814 20133814 T C ZNF682 Silent p.P75P 0.27 TCGA-CG-4442-01 19 20228702 20228702 A - ZNF90 Frame_Shift_Del p.G116Vfs*22 0.32 TCGA-CG-4442-01 19 21240210 21240210 A G ZNF430 Missense_Mutation p.I366V 0.29 deleterious(0.04) benign(0.151) TCGA-CG-4442-01 19 2210737 2210737 G A DOT1L Missense_Mutation p.G412R 0.38 deleterious(0) probably_damaging(0.999) TCGA-CG-4442-01 19 2249524 2249524 G A AMH Missense_Mutation p.G65S 0.38 tolerated(0.85) benign(0.002) TCGA-CG-4442-01 19 22575046 22575046 A G ZNF98 Missense_Mutation p.F331L 0.35 deleterious(0) probably_damaging(0.989) TCGA-CG-4442-01 19 22846608 22846608 G A ZNF492 Missense_Mutation p.C46Y 0.09 tolerated(0.16) possibly_damaging(0.831) TCGA-CG-4442-01 19 29698962 29698962 G A UQCRFS1 Silent p.S106S 0.34 TCGA-CG-4442-01 19 30935815 30935815 C A ZNF536 Missense_Mutation p.P449H 0.36 tolerated(0.93) benign(0.006) TCGA-CG-4442-01 19 33638559 33638559 C T WDR88 Missense_Mutation p.A162V 0.26 deleterious(0.01) probably_damaging(0.94) TCGA-CG-4442-01 19 35523445 35523445 C T SCN1B Silent p.C18C 0.38 TCGA-CG-4442-01 19 35719446 35719446 G T FAM187B Silent p.S46S 0.37 TCGA-CG-4442-01 19 3600213 3600213 G A TBXA2R Silent p.R140R 0.33 TCGA-CG-4442-01 19 3600354 3600354 G A TBXA2R Silent p.F93F 0.34 TCGA-CG-4442-01 19 3600562 3600562 A G TBXA2R Missense_Mutation p.L24P 0.34 tolerated(0.36) probably_damaging(0.916) TCGA-CG-4442-01 19 36034357 36034357 C T GAPDHS Missense_Mutation p.A286V 0.38 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CG-4442-01 19 36166866 36166867 - C UPK1A Frame_Shift_Ins p.L200Pfs*112 0.38 TCGA-CG-4442-01 19 36223002 36223002 G - KMT2B Frame_Shift_Del p.G1879Vfs*16 0.44 TCGA-CG-4442-01 19 3633494 3633494 A G PIP5K1C Missense_Mutation p.Y649H 0.32 deleterious_low_confidence(0) possibly_damaging(0.677) TCGA-CG-4442-01 19 36351855 36351855 G A KIRREL2 Missense_Mutation p.V325M 0.28 tolerated(0.08) benign(0.121) TCGA-CG-4442-01 19 3638999 3638999 C T PIP5K1C Silent p.P601P 0.25 TCGA-CG-4442-01 19 37117125 37117125 T G ZNF382 Missense_Mutation p.L109R 0.32 deleterious(0.02) benign(0.107) TCGA-CG-4442-01 19 37697974 37697974 G T CTC-454I21.3 Missense_Mutation p.L2M 0.26 tolerated(0.43) probably_damaging(0.997) TCGA-CG-4442-01 19 37967389 37967389 C T ZNF570 Intron 0.61 TCGA-CG-4442-01 19 38610300 38610300 G - SIPA1L3 Frame_Shift_Del p.V884Wfs*65 0.42 TCGA-CG-4442-01 19 38643562 38643562 G A SIPA1L3 Missense_Mutation p.G1206S 0.42 tolerated(0.8) benign(0.006) TCGA-CG-4442-01 19 38899416 38899416 G - FAM98C Frame_Shift_Del p.G317Afs*49 0.36 TCGA-CG-4442-01 19 38990588 38990588 G T RYR1 Nonsense_Mutation p.G2419* 0.35 TCGA-CG-4442-01 19 39228150 39228150 C T CAPN12 Missense_Mutation p.R365H 0.43 deleterious(0) probably_damaging(0.995) TCGA-CG-4442-01 19 39423398 39423398 C T MRPS12 3'UTR 0.55 TCGA-CG-4442-01 19 39691292 39691292 C T NCCRP1 Missense_Mutation p.R242C 0.33 deleterious(0) probably_damaging(1) TCGA-CG-4442-01 19 39734729 39734729 A G IFNL3 Silent p.A109A 0.24 TCGA-CG-4442-01 19 3977575 3977575 G A EEF2 Missense_Mutation p.R701C 0.41 tolerated(0.13) probably_damaging(0.995) TCGA-CG-4442-01 19 40320999 40320999 G - DYRK1B Intron 0.37 TCGA-CG-4442-01 19 40362848 40362848 G C FCGBP Silent p.R5074R 0.03 TCGA-CG-4442-01 19 40424239 40424239 T G FCGBP Missense_Mutation p.N655T 0.37 benign(0.343) TCGA-CG-4442-01 19 41008168 41008168 T C SPTBN4 Missense_Mutation p.V344A 0.33 deleterious(0) possibly_damaging(0.462) TCGA-CG-4442-01 19 41807560 41807560 C T HNRNPUL1 Silent p.T546T 0.36 TCGA-CG-4442-01 19 41810111 41810111 C A HNRNPUL1 Missense_Mutation p.P736H 0.21 deleterious_low_confidence(0.03) possibly_damaging(0.893) TCGA-CG-4442-01 19 42730321 42730321 G A ZNF526 Missense_Mutation p.R589Q 0.37 tolerated(0.35) possibly_damaging(0.904) TCGA-CG-4442-01 19 42793161 42793162 - C CIC Frame_Shift_Ins p.R353Pfs*54 0.30 TCGA-CG-4442-01 19 4318416 4318416 C T FSD1 Silent p.D291D 0.35 TCGA-CG-4442-01 19 43519329 43519329 G A PSG11 Silent p.C301C 0.28 TCGA-CG-4442-01 19 4366969 4366969 C A SH3GL1 Missense_Mutation p.G23V 0.33 deleterious(0) possibly_damaging(0.89) TCGA-CG-4442-01 19 44352842 44352844 ATA - ZNF283 3'UTR 0.32 TCGA-CG-4442-01 19 44610464 44610464 T C ZNF224 Intron 0.45 TCGA-CG-4442-01 19 45017279 45017279 G A CEACAM20 RNA 0.33 TCGA-CG-4442-01 19 45315630 45315630 G A BCAM Missense_Mutation p.A139T 0.37 tolerated(0.66) benign(0.057) TCGA-CG-4442-01 19 45448708 45448708 A - APOC4 3'UTR 0.35 TCGA-CG-4442-01 19 45805630 45805630 A G MARK4 Splice_Site p.X641_splice 0.37 TCGA-CG-4442-01 19 45901297 45901297 G A PPP1R13L Missense_Mutation p.A55V 0.29 deleterious_low_confidence(0.01) benign(0.038) TCGA-CG-4442-01 19 45911523 45911523 G A CD3EAP Silent p.T99T 0.27 TCGA-CG-4442-01 19 45973862 45973863 TG - FOSB Intron 0.32 TCGA-CG-4442-01 19 46216274 46216274 G - FBXO46 Frame_Shift_Del p.A161Pfs*39 0.35 TCGA-CG-4442-01 19 46388666 46388666 G - IRF2BP1 Frame_Shift_Del p.L123Cfs*39 0.31 TCGA-CG-4442-01 19 46417728 46417728 A G NANOS2 Missense_Mutation p.V75A 0.28 deleterious(0) probably_damaging(0.998) TCGA-CG-4442-01 19 47422063 47422063 G A ARHGAP35 Missense_Mutation p.R44H 0.40 deleterious(0.04) probably_damaging(0.999) TCGA-CG-4442-01 19 47884088 47884088 C T DHX34 Missense_Mutation p.R1000W 0.20 deleterious(0) possibly_damaging(0.816) TCGA-CG-4442-01 19 47885397 47885397 C T DHX34 3'UTR 0.31 TCGA-CG-4442-01 19 48537535 48537535 G - CABP5 Frame_Shift_Del p.R145Gfs*24 0.42 TCGA-CG-4442-01 19 49106851 49106851 C T FAM83E Missense_Mutation p.R359H 0.50 tolerated(0.15) benign(0.016) TCGA-CG-4442-01 19 49116511 49116511 C T FAM83E Missense_Mutation p.S40N 0.31 deleterious(0.01) probably_damaging(0.938) TCGA-CG-4442-01 19 49131529 49131530 - G SPHK2 Frame_Shift_Ins 0.34 TCGA-CG-4442-01 19 49183540 49183540 G A RN7SL345P 5'Flank 0.45 TCGA-CG-4442-01 19 49183901 49183901 C T RN7SL345P 5'Flank 0.25 TCGA-CG-4442-01 19 49184043 49184043 C T RN7SL345P 5'Flank 0.29 TCGA-CG-4442-01 19 49631116 49631116 G A PPFIA3 Intron 0.21 TCGA-CG-4442-01 19 49850473 49850474 GG - TEAD2 Frame_Shift_Del p.H299Cfs*18 0.33 TCGA-CG-4442-01 19 50059938 50059938 G A NOSIP Missense_Mutation p.T198M 0.36 tolerated(0.16) benign(0.016) TCGA-CG-4442-01 19 50128883 50128883 G - PRR12 3'UTR 0.38 TCGA-CG-4442-01 19 50208489 50208489 C T CPT1C Missense_Mutation p.R300C 0.37 deleterious(0.02) probably_damaging(0.956) TCGA-CG-4442-01 19 50360333 50360333 C T PTOV1 Silent p.Y220Y 0.35 TCGA-CG-4442-01 19 50549260 50549260 C T ZNF473 Silent p.C520C 0.38 TCGA-CG-4442-01 19 51220008 51220008 G T SHANK1 Missense_Mutation p.L57I 0.42 benign(0.341) TCGA-CG-4442-01 19 51728620 51728620 C T CD33 Missense_Mutation p.R62W 0.36 tolerated(0.09) possibly_damaging(0.641) TCGA-CG-4442-01 19 51857944 51857944 A G ETFB 5'UTR 0.15 TCGA-CG-4442-01 19 52076518 52076518 T C ZNF175 5'UTR 0.38 TCGA-CG-4442-01 19 5231328 5231328 G A PTPRS Silent p.D716D 0.33 TCGA-CG-4442-01 19 5258116 5258116 A G PTPRS Silent p.S206S 0.39 TCGA-CG-4442-01 19 52660326 52660326 A G ZNF836 Silent p.L204L 0.33 TCGA-CG-4442-01 19 52954815 52954815 G A ZNF578 5'Flank 0.28 TCGA-CG-4442-01 19 53117526 53117526 G A ZNF83 Missense_Mutation p.R98C 0.35 tolerated(1) benign(0) TCGA-CG-4442-01 19 53589549 53589549 C A ZNF160 5'UTR 0.33 TCGA-CG-4442-01 19 54567079 54567079 C T VSTM1 5'UTR 0.41 TCGA-CG-4442-01 19 54802622 54802622 G T LILRA3 Silent p.P273P 0.27 TCGA-CG-4442-01 19 54974255 54974255 G A LENG9 Missense_Mutation p.A174V 0.22 deleterious(0.01) possibly_damaging(0.739) TCGA-CG-4442-01 19 55148385 55148385 C - LILRB1 3'UTR 0.37 TCGA-CG-4442-01 19 55738739 55738739 C T TMEM86B Missense_Mutation p.R164H 0.27 deleterious(0) probably_damaging(0.999) TCGA-CG-4442-01 19 5667115 5667115 G - SAFB Frame_Shift_Del p.G800Afs*8 0.44 TCGA-CG-4442-01 19 57132978 57132978 G A ZNF71 Missense_Mutation p.G108D 0.41 deleterious(0) benign(0.047) TCGA-CG-4442-01 19 5754227 5754227 C - CATSPERD Frame_Shift_Del p.Q418Sfs*6 0.34 TCGA-CG-4442-01 19 57724155 57724155 A - ZNF264 Frame_Shift_Del p.N565Ifs*5 0.37 TCGA-CG-4442-01 19 5785423 5785423 G A CTB-54O9.9 Silent p.S39S 0.33 TCGA-CG-4442-01 19 58005213 58005213 A G ZNF419 Missense_Mutation p.R431G 0.03 tolerated(0.24) benign(0.136) TCGA-CG-4442-01 19 58018753 58018753 T C ZNF773 Silent p.L430L 0.31 TCGA-CG-4442-01 19 58573064 58573064 G T ZNF135 Silent p.L62L 0.37 TCGA-CG-4442-01 19 58867759 58867759 C T ZNF497 Missense_Mutation p.A415T 0.33 tolerated(0.25) benign(0.051) TCGA-CG-4442-01 19 58991071 58991071 A C ZNF446 Missense_Mutation p.K230T 0.28 tolerated(0.12) possibly_damaging(0.549) TCGA-CG-4442-01 19 58992148 58992148 G C ZNF446 3'UTR 0.19 TCGA-CG-4442-01 19 58992174 58992174 T C ZNF446 3'UTR 0.21 TCGA-CG-4442-01 19 5918577 5918577 G A RANBP3 Missense_Mutation p.A468V 0.40 deleterious(0) probably_damaging(0.993) TCGA-CG-4442-01 19 6002856 6002856 T C RFX2 Missense_Mutation p.Q509R 0.14 deleterious(0.03) benign(0.167) TCGA-CG-4442-01 19 6833932 6833932 G A VAV1 Missense_Mutation p.R582H 0.33 tolerated(0.22) benign(0.002) TCGA-CG-4442-01 19 7518514 7518514 C T ARHGEF18 Missense_Mutation p.L485F 0.32 tolerated(0.56) probably_damaging(0.958) TCGA-CG-4442-01 19 757730 757730 C T MISP Missense_Mutation p.R262C 0.46 tolerated(0.17) benign(0.01) TCGA-CG-4442-01 19 7675616 7675616 T C CAMSAP3 Missense_Mutation p.F338L 0.04 tolerated(0.72) benign(0.389) TCGA-CG-4442-01 19 7913812 7913812 G A EVI5L Silent p.L111L 0.30 TCGA-CG-4442-01 19 7975205 7975205 G A MAP2K7 Missense_Mutation p.G132S 0.38 deleterious(0) probably_damaging(1) TCGA-CG-4442-01 19 7976447 7976447 T C MAP2K7 Missense_Mutation p.S355P 0.43 deleterious(0.02) possibly_damaging(0.864) TCGA-CG-4442-01 19 8201281 8201281 C T FBN3 Missense_Mutation p.E446K 0.26 tolerated(0.14) possibly_damaging(0.509) TCGA-CG-4442-01 19 8536286 8536286 C T HNRNPM Silent p.I324I 0.33 TCGA-CG-4442-01 19 856072 856072 T C ELANE Missense_Mutation p.F238L 0.03 deleterious(0.02) probably_damaging(0.949) TCGA-CG-4442-01 19 889762 889762 C T MED16 Nonsense_Mutation p.W108* 0.26 TCGA-CG-4442-01 19 9077648 9077648 G T MUC16 Silent p.T3266T 0.34 TCGA-CG-4442-01 19 9213067 9213067 C T OR7G2 Missense_Mutation p.V306M 0.31 tolerated(1) benign(0.004) TCGA-CG-4442-01 19 9213598 9213599 - A OR7G2 Frame_Shift_Ins p.A129Cfs*14 0.45 TCGA-CG-4442-01 19 9213738 9213738 A G OR7G2 Missense_Mutation p.F82S 0.24 deleterious(0) possibly_damaging(0.596) TCGA-CG-4442-01 1 10240023 10240023 G A UBE4B 3'UTR 0.38 TCGA-CG-4442-01 1 10719758 10719759 - T CASZ1 Frame_Shift_Ins p.N448Efs*7 0.25 TCGA-CG-4442-01 1 107961230 107961230 G A NTNG1 Intron 0.48 TCGA-CG-4442-01 1 109525279 109525279 T C WDR47 Missense_Mutation p.T748A 0.03 deleterious(0) probably_damaging(0.996) TCGA-CG-4442-01 1 11082567 11082567 C T TARDBP Silent p.F367F 0.27 TCGA-CG-4442-01 1 11307756 11307756 T C MTOR Missense_Mutation p.K384R 0.34 tolerated(1) benign(0.007) TCGA-CG-4442-01 1 11863504 11863504 G A MTHFR 5'Flank 0.50 TCGA-CG-4442-01 1 11887152 11887152 G T CLCN6 Missense_Mutation p.K238N 0.44 deleterious(0) probably_damaging(0.999) TCGA-CG-4442-01 1 120263777 120263778 - T PHGDH Intron 0.37 TCGA-CG-4442-01 1 12337111 12337111 T C VPS13D Missense_Mutation p.Y1156H 0.05 possibly_damaging(0.46) TCGA-CG-4442-01 1 1290349 1290349 C T MXRA8 Missense_Mutation p.R221H 0.44 deleterious(0) probably_damaging(0.998) TCGA-CG-4442-01 1 1372689 1372689 C - VWA1 Frame_Shift_Del p.M155Cfs*51 0.37 TCGA-CG-4442-01 1 144828718 144828719 - T NBPF9 Frame_Shift_Ins p.T665Yfs*25 0.25 TCGA-CG-4442-01 1 145606365 145606365 T C POLR3C Splice_Site p.X197_splice 0.38 TCGA-CG-4442-01 1 150482531 150482531 C T ECM1 Intron 0.03 TCGA-CG-4442-01 1 150778663 150778663 T - CTSK Frame_Shift_Del p.N53Tfs*2 0.45 TCGA-CG-4442-01 1 150789283 150789283 G - ARNT Frame_Shift_Del p.R595Gfs*11 0.33 TCGA-CG-4442-01 1 150923206 150923206 A G SETDB1 Missense_Mutation p.N618S 0.33 tolerated(0.19) probably_damaging(0.998) TCGA-CG-4442-01 1 151022961 151022961 G A C1orf56 3'UTR 0.36 TCGA-CG-4442-01 1 151502543 151502544 - G CGN Frame_Shift_Ins p.E757Gfs*83 0.44 TCGA-CG-4442-01 1 151990992 151990992 G A NBPF18P RNA 0.50 TCGA-CG-4442-01 1 152081227 152081227 T C TCHH Missense_Mutation p.E1489G 0.27 unknown(0) TCGA-CG-4442-01 1 152188012 152188012 T C HRNR Silent p.Q2031Q 0.09 TCGA-CG-4442-01 1 152192934 152192934 C A HRNR Missense_Mutation p.G391C 0.41 unknown(0) TCGA-CG-4442-01 1 152326514 152326514 T C FLG2 Missense_Mutation p.S1250G 0.38 unknown(0) TCGA-CG-4442-01 1 152484072 152484072 C A LCE5A Missense_Mutation p.P21H 0.37 deleterious_low_confidence(0.01) unknown(0) TCGA-CG-4442-01 1 152882474 152882474 A G IVL Silent p.V67V 0.06 TCGA-CG-4442-01 1 153657446 153657446 G A NPR1 Missense_Mutation p.M497I 0.36 tolerated(0.15) benign(0.017) TCGA-CG-4442-01 1 154067526 154067526 A - NUP210L Frame_Shift_Del p.L691Wfs*3 0.37 TCGA-CG-4442-01 1 154112412 154112412 C T NUP210L Missense_Mutation p.E195K 0.34 deleterious(0) probably_damaging(0.988) TCGA-CG-4442-01 1 154239006 154239006 G A UBAP2L Missense_Mutation p.V978M 0.39 deleterious(0) probably_damaging(0.956) TCGA-CG-4442-01 1 154296704 154296704 G T AQP10 Intron 0.36 TCGA-CG-4442-01 1 155020285 155020285 C T DCST1 Silent p.G545G 0.27 TCGA-CG-4442-01 1 155154563 155154563 C T TRIM46 Silent p.G608G 0.18 TCGA-CG-4442-01 1 155252506 155252506 C T HCN3 Missense_Mutation p.R195W 0.38 deleterious(0.01) possibly_damaging(0.512) TCGA-CG-4442-01 1 155282155 155282155 G A FDPS Missense_Mutation p.R150Q 0.42 tolerated(0.3) benign(0.049) TCGA-CG-4442-01 1 155448019 155448019 T - ASH1L Frame_Shift_Del p.S1548Afs*2 0.30 TCGA-CG-4442-01 1 155451338 155451338 A G ASH1L Silent p.S441S 0.25 TCGA-CG-4442-01 1 156105025 156105025 G A LMNA Silent p.G286G 0.08 TCGA-CG-4442-01 1 156235734 156235734 T G SMG5 Missense_Mutation p.S565R 0.43 deleterious(0) probably_damaging(0.948) TCGA-CG-4442-01 1 156622819 156622819 A G BCAN Intron 0.25 TCGA-CG-4442-01 1 156627543 156627543 C - BCAN Frame_Shift_Del p.L764Cfs*92 0.35 TCGA-CG-4442-01 1 156779193 156779193 G A SH2D2A Silent p.R278R 0.38 TCGA-CG-4442-01 1 156816356 156816356 G A INSRR Nonsense_Mutation p.Q589* 0.43 TCGA-CG-4442-01 1 158152042 158152042 C T CD1D Silent p.T183T 0.31 TCGA-CG-4442-01 1 158226686 158226686 C T CD1A Missense_Mutation p.R239W 0.41 deleterious(0.03) possibly_damaging(0.906) TCGA-CG-4442-01 1 158299763 158299763 G T CD1B Missense_Mutation p.F162L 0.39 tolerated(0.08) benign(0) TCGA-CG-4442-01 1 158325868 158325868 G A CD1E Missense_Mutation p.G293R 0.05 tolerated(0.08) benign(0.067) TCGA-CG-4442-01 1 158581162 158581162 T G SPTA1 Missense_Mutation p.Q2384H 0.35 deleterious(0) probably_damaging(0.999) TCGA-CG-4442-01 1 158687251 158687251 T C OR6K3 Missense_Mutation p.R219G 0.47 tolerated(0.27) benign(0.06) TCGA-CG-4442-01 1 159900941 159900941 A G IGSF9 Missense_Mutation p.W542R 0.35 deleterious(0) probably_damaging(0.999) TCGA-CG-4442-01 1 161166471 161166471 C A ADAMTS4 Missense_Mutation p.G278V 0.36 deleterious(0.01) benign(0.057) TCGA-CG-4442-01 1 162325131 162325131 C T NOS1AP Silent p.H250H 0.35 TCGA-CG-4442-01 1 16269901 16269901 C A ZBTB17 Missense_Mutation p.G564C 0.36 deleterious(0.02) probably_damaging(0.996) TCGA-CG-4442-01 1 16270392 16270392 T C ZBTB17 Splice_Site p.X458_splice 0.33 TCGA-CG-4442-01 1 165876941 165876941 C T UCK2 Nonsense_Mutation p.Q223* 0.27 TCGA-CG-4442-01 1 166958612 166958612 G A MAEL Missense_Mutation p.R8Q 0.23 deleterious(0.03) possibly_damaging(0.848) TCGA-CG-4442-01 1 167865906 167865906 G - ADCY10 Frame_Shift_Del p.N223Ifs*27 0.38 TCGA-CG-4442-01 1 1684156 1684156 A - NADK 3'UTR 0.36 TCGA-CG-4442-01 1 169351458 169351458 A - BLZF1 Frame_Shift_Del p.K321Rfs*21 0.30 TCGA-CG-4442-01 1 17046548 17046548 C T ESPNP RNA 0.09 TCGA-CG-4442-01 1 171753504 171753504 C T METTL13 Missense_Mutation p.R260C 0.47 tolerated(0.07) benign(0.339) TCGA-CG-4442-01 1 172410733 172410734 - T PIGC 3'UTR 0.39 TCGA-CG-4442-01 1 172411516 172411516 G - PIGC Frame_Shift_Del p.H83Ifs*4 0.43 TCGA-CG-4442-01 1 173579155 173579155 A G ANKRD45 3'UTR 0.14 TCGA-CG-4442-01 1 173702865 173702865 C T KLHL20 Nonsense_Mutation p.R13* 0.25 TCGA-CG-4442-01 1 173735385 173735385 G A KLHL20 Missense_Mutation p.V418M 0.38 deleterious(0) possibly_damaging(0.883) TCGA-CG-4442-01 1 174417458 174417458 T C GPR52 Missense_Mutation p.L70P 0.07 tolerated(0.05) probably_damaging(0.999) TCGA-CG-4442-01 1 175372584 175372584 C T TNR Missense_Mutation p.S223N 0.38 tolerated(0.41) benign(0.02) TCGA-CG-4442-01 1 175996767 175996767 T C RFWD2 Missense_Mutation p.N557S 0.05 deleterious(0) probably_damaging(1) TCGA-CG-4442-01 1 176012905 176012905 A G RFWD2 Missense_Mutation p.Y491H 0.42 deleterious(0) probably_damaging(1) TCGA-CG-4442-01 1 17609341 17609341 G A PADI3 Missense_Mutation p.V588M 0.48 deleterious(0.01) probably_damaging(1) TCGA-CG-4442-01 1 181686388 181686388 G A CACNA1E Missense_Mutation p.C492Y 0.38 deleterious(0) benign(0.384) TCGA-CG-4442-01 1 182869141 182869141 C - SHCBP1L Frame_Shift_Del p.D647Ifs*4 0.13 TCGA-CG-4442-01 1 186107029 186107029 T A HMCN1 Missense_Mutation p.S4617T 0.08 benign(0.001) TCGA-CG-4442-01 1 186325579 186325579 A G TPR Missense_Mutation p.I576T 0.38 benign(0.152) TCGA-CG-4442-01 1 186901899 186901899 C A PLA2G4A Missense_Mutation p.P188H 0.36 deleterious(0) probably_damaging(0.986) TCGA-CG-4442-01 1 18808480 18808480 A G KLHDC7A Silent p.Q335Q 0.50 TCGA-CG-4442-01 1 19467923 19467923 G - UBR4 Frame_Shift_Del p.M2803Cfs*16 0.49 TCGA-CG-4442-01 1 197073232 197073232 T - ASPM Frame_Shift_Del p.I1717* 0.35 TCGA-CG-4442-01 1 19983449 19983449 A G MINOS1-NBL1 Missense_Mutation p.K125E 0.43 tolerated(0.09) probably_damaging(0.941) TCGA-CG-4442-01 1 200977992 200977992 C T KIF21B Missense_Mutation p.A118T 0.36 tolerated(0.5) benign(0.012) TCGA-CG-4442-01 1 202107101 202107101 G A ARL8A Silent p.S90S 0.31 TCGA-CG-4442-01 1 203015058 203015058 T C PPFIA4 Silent p.H23H 0.40 TCGA-CG-4442-01 1 203152803 203152803 C T CHI3L1 Missense_Mutation p.R144Q 0.43 tolerated(0.19) benign(0.007) TCGA-CG-4442-01 1 203819736 203819736 C T ZC3H11A Missense_Mutation p.A678V 0.25 tolerated(0.05) benign(0.255) TCGA-CG-4442-01 1 204924033 204924033 C - NFASC Frame_Shift_Del p.P165Rfs*12 0.33 TCGA-CG-4442-01 1 205238532 205238532 G A TMCC2 Missense_Mutation p.G401D 0.40 deleterious(0.01) probably_damaging(0.991) TCGA-CG-4442-01 1 205633814 205633814 C G SLC45A3 5'UTR 0.27 TCGA-CG-4442-01 1 207495788 207495788 T - CD55 Frame_Shift_Del p.E57Rfs*4 0.32 TCGA-CG-4442-01 1 207739212 207739212 A G CR1 Missense_Mutation p.Y1299C 0.28 tolerated(0.13) benign(0.405) TCGA-CG-4442-01 1 207782932 207782932 T C CR1 Missense_Mutation p.I2065T 0.06 deleterious(0.01) benign(0.176) TCGA-CG-4442-01 1 208391087 208391087 C - PLXNA2 Frame_Shift_Del p.A61Pfs*13 0.41 TCGA-CG-4442-01 1 20977238 20977238 G A PINK1 3'UTR 0.52 TCGA-CG-4442-01 1 209788709 209788709 C T LAMB3 Silent p.L1142L 0.31 TCGA-CG-4442-01 1 209803202 209803202 C - LAMB3 Frame_Shift_Del p.A338Hfs*58 0.40 TCGA-CG-4442-01 1 209961707 209961707 A - IRF6 3'UTR 0.30 TCGA-CG-4442-01 1 210857460 210857460 G A KCNH1 Silent p.S711S 0.33 TCGA-CG-4442-01 1 2116337 2116337 C - C1orf86 3'Flank 0.30 TCGA-CG-4442-01 1 212519208 212519208 C T PPP2R5A Nonsense_Mutation p.R213* 0.25 TCGA-CG-4442-01 1 212981104 212981104 T C TATDN3 Missense_Mutation p.F172L 0.06 deleterious(0) probably_damaging(0.992) TCGA-CG-4442-01 1 214169903 214169903 C A PROX1 Missense_Mutation p.L9I 0.32 tolerated_low_confidence(0.09) benign(0.265) TCGA-CG-4442-01 1 215179291 215179291 T C KCNK2 Silent p.D9D 0.31 TCGA-CG-4442-01 1 215777493 215777493 C T KCTD3 Silent p.I386I 0.31 TCGA-CG-4442-01 1 217793264 217793264 T - GPATCH2 Frame_Shift_Del p.R212Efs*3 0.39 TCGA-CG-4442-01 1 218607454 218607454 A G TGFB2 Missense_Mutation p.T209A 0.31 tolerated(0.36) benign(0.005) TCGA-CG-4442-01 1 22179477 22179477 G A HSPG2 Missense_Mutation p.P2176S 0.26 benign(0.26) TCGA-CG-4442-01 1 225598068 225598068 G A LBR Silent p.R413R 0.38 TCGA-CG-4442-01 1 226562030 226562030 G A PARP1 Missense_Mutation p.T656I 0.35 tolerated(0.08) benign(0.004) TCGA-CG-4442-01 1 226923855 226923855 C - ITPKB Frame_Shift_Del p.R436Vfs*53 0.28 TCGA-CG-4442-01 1 228434434 228434434 C T OBSCN Silent p.G1413G 0.40 TCGA-CG-4442-01 1 228468282 228468282 G A OBSCN Missense_Mutation p.R3090H 0.44 benign(0.008) TCGA-CG-4442-01 1 230979463 230979463 C T C1orf198 Silent p.A188A 0.32 TCGA-CG-4442-01 1 2317268 2317268 C T MORN1 Missense_Mutation p.G143S 0.37 deleterious(0) probably_damaging(1) TCGA-CG-4442-01 1 232581327 232581327 C T SIPA1L2 Missense_Mutation p.A1101T 0.33 tolerated(0.17) benign(0.02) TCGA-CG-4442-01 1 233394589 233394590 - C PCNXL2 Frame_Shift_Ins p.D340Gfs*13 0.27 TCGA-CG-4442-01 1 233507898 233507898 C T MLK4 Missense_Mutation p.A556V 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-CG-4442-01 1 236208817 236208817 T C NID1 Missense_Mutation p.K231R 0.36 tolerated(0.17) benign(0.005) TCGA-CG-4442-01 1 237919637 237919637 A G RYR2 Missense_Mutation p.H3732R 0.21 benign(0.111) TCGA-CG-4442-01 1 23845552 23845552 T C E2F2 Missense_Mutation p.K270E 0.37 deleterious(0) benign(0.362) TCGA-CG-4442-01 1 240990446 240990446 C A RGS7 Silent p.V212V 0.27 TCGA-CG-4442-01 1 241798364 241798364 T C CHML Silent p.S235S 0.38 TCGA-CG-4442-01 1 247150914 247150914 A G ZNF695 Silent p.C301C 0.25 TCGA-CG-4442-01 1 247319909 247319909 T - ZNF124 Frame_Shift_Del p.T277Lfs*31 0.35 TCGA-CG-4442-01 1 248059019 248059019 C T OR2W3 Missense_Mutation p.T44I 0.38 tolerated(0.05) benign(0.008) TCGA-CG-4442-01 1 248309326 248309326 C A OR2M5 Missense_Mutation p.R293S 0.38 deleterious(0) benign(0.025) TCGA-CG-4442-01 1 248512384 248512384 T - OR14C36 Frame_Shift_Del p.F105Lfs*28 0.28 TCGA-CG-4442-01 1 248813394 248813394 A G OR2T27 Silent p.S264S 0.26 TCGA-CG-4442-01 1 249107289 249107289 C T SH3BP5L Missense_Mutation p.A204T 0.51 deleterious(0.02) possibly_damaging(0.828) TCGA-CG-4442-01 1 25568967 25568967 T C C1orf63 3'UTR 0.40 TCGA-CG-4442-01 1 34166229 34166229 A - CSMD2 Frame_Shift_Del p.F1167Lfs*6 0.30 TCGA-CG-4442-01 1 3547699 3547699 G A WRAP73 Intron 0.39 TCGA-CG-4442-01 1 36358858 36358858 T C AGO1 Missense_Mutation p.M164T 0.29 tolerated(0.1) benign(0.001) TCGA-CG-4442-01 1 36396956 36396956 C - AGO3 5'UTR 0.62 TCGA-CG-4442-01 1 36921835 36921835 G A MRPS15 Nonsense_Mutation p.R197* 0.33 TCGA-CG-4442-01 1 36938264 36938264 G A CSF3R Missense_Mutation p.R233W 0.43 tolerated(0.15) benign(0.003) TCGA-CG-4442-01 1 3703754 3703754 C T LRRC47 Missense_Mutation p.V246I 0.42 deleterious(0.01) benign(0.071) TCGA-CG-4442-01 1 3703780 3703780 A G LRRC47 Missense_Mutation p.L237P 0.33 deleterious(0) probably_damaging(0.976) TCGA-CG-4442-01 1 37948445 37948445 C - ZC3H12A Frame_Shift_Del p.R347Efs*22 0.42 TCGA-CG-4442-01 1 39844153 39844153 G T MACF1 Nonsense_Mutation p.G2350* 0.37 TCGA-CG-4442-01 1 39879590 39879590 C T KIAA0754 Missense_Mutation p.P1082L 0.42 unknown(0) TCGA-CG-4442-01 1 40149624 40149624 C T HPCAL4 Missense_Mutation p.M121I 0.27 deleterious(0.04) possibly_damaging(0.627) TCGA-CG-4442-01 1 40312897 40312897 A - TRIT1 Frame_Shift_Del p.L334* 0.37 TCGA-CG-4442-01 1 40961584 40961584 T C ZFP69 Silent p.H478H 0.31 TCGA-CG-4442-01 1 43224593 43224593 T C LEPRE1 Silent p.P290P 0.34 TCGA-CG-4442-01 1 43317265 43317265 C T ZNF691 Silent p.G243G 0.38 TCGA-CG-4442-01 1 43829798 43829798 A G ELOVL1 Missense_Mutation p.V210A 0.36 deleterious(0.05) probably_damaging(0.957) TCGA-CG-4442-01 1 44163664 44163664 C T KDM4A Missense_Mutation p.L941F 0.32 deleterious(0) probably_damaging(0.969) TCGA-CG-4442-01 1 44415386 44415386 G A IPO13 Missense_Mutation p.A128T 0.38 deleterious(0.01) possibly_damaging(0.579) TCGA-CG-4442-01 1 44437275 44437275 T C DPH2 Missense_Mutation p.L234P 0.32 deleterious(0) probably_damaging(0.953) TCGA-CG-4442-01 1 44447558 44447558 C T B4GALT2 Missense_Mutation p.R200W 0.32 deleterious(0) probably_damaging(1) TCGA-CG-4442-01 1 44684858 44684858 C T DMAP1 Missense_Mutation p.T284M 0.34 tolerated(0.1) possibly_damaging(0.738) TCGA-CG-4442-01 1 45218915 45218915 C A KIF2C Missense_Mutation p.P184H 0.34 deleterious(0.02) benign(0.443) TCGA-CG-4442-01 1 45504669 45504669 G A ZSWIM5 Silent p.C611C 0.27 TCGA-CG-4442-01 1 46094046 46094046 A G GPBP1L1 Missense_Mutation p.L436S 0.28 deleterious(0.01) benign(0.116) TCGA-CG-4442-01 1 46500422 46500422 C T MAST2 Missense_Mutation p.R1361W 0.30 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-CG-4442-01 1 47571852 47571852 C T CYP4Z1 Missense_Mutation p.R374C 0.33 deleterious(0) probably_damaging(0.965) TCGA-CG-4442-01 1 47614462 47614462 A - CYP4A22 Frame_Shift_Del p.Q518Rfs*87 0.33 TCGA-CG-4442-01 1 4829991 4829992 - A AJAP1 Frame_Shift_Ins p.N305Kfs*47 0.34 TCGA-CG-4442-01 1 50663114 50663114 C T ELAVL4 Missense_Mutation p.L267F 0.36 tolerated(0.24) benign(0.049) TCGA-CG-4442-01 1 51771659 51771659 G A TTC39A Missense_Mutation p.A197V 0.31 deleterious(0) probably_damaging(1) TCGA-CG-4442-01 1 52179678 52179678 G A OSBPL9 Missense_Mutation p.R82H 0.36 deleterious(0.04) benign(0.317) TCGA-CG-4442-01 1 54433549 54433549 A G LRRC42 Silent p.Q408Q 0.29 TCGA-CG-4442-01 1 55624658 55624658 G A USP24 Missense_Mutation p.R374C 0.45 tolerated(0.16) possibly_damaging(0.781) TCGA-CG-4442-01 1 57173341 57173341 T - PRKAA2 Frame_Shift_Del p.F540Lfs*7 0.39 TCGA-CG-4442-01 1 59126870 59126870 C T MYSM1 Missense_Mutation p.R767Q 0.36 tolerated(0.09) benign(0.035) TCGA-CG-4442-01 1 6208971 6208971 G A CHD5 Silent p.C442C 0.31 TCGA-CG-4442-01 1 6257785 6257785 T - RPL22 Frame_Shift_Del p.K15Rfs*5 0.46 TCGA-CG-4442-01 1 6534577 6534577 A T PLEKHG5 Missense_Mutation p.S204T 0.42 deleterious(0) probably_damaging(0.979) TCGA-CG-4442-01 1 67436605 67436605 C T MIER1 Missense_Mutation p.A296V 0.28 tolerated(0.06) benign(0.226) TCGA-CG-4442-01 1 71512898 71512898 C T PTGER3 Silent p.E121E 0.25 TCGA-CG-4442-01 1 79383320 79383320 A G ELTD1 Missense_Mutation p.L583P 0.41 deleterious(0) probably_damaging(1) TCGA-CG-4442-01 1 79383329 79383329 A T ELTD1 Missense_Mutation p.L580Q 0.35 deleterious(0) probably_damaging(1) TCGA-CG-4442-01 1 8384496 8384496 C T SLC45A1 Missense_Mutation p.T36I 0.38 deleterious_low_confidence(0) possibly_damaging(0.653) TCGA-CG-4442-01 1 8420006 8420006 G A RERE Missense_Mutation p.R1146W 0.47 unknown(0) TCGA-CG-4442-01 1 87380684 87380684 C A HS2ST1 5'UTR 0.11 TCGA-CG-4442-01 1 89408688 89408688 T C CCBL2 Silent p.K434K 0.30 TCGA-CG-4442-01 1 89851037 89851037 T C GBP6 3'UTR 0.34 TCGA-CG-4442-01 1 89875868 89875868 C T GBP1P1 5'Flank 0.43 TCGA-CG-4442-01 1 90399962 90399962 A G LRRC8D Silent p.K445K 0.31 TCGA-CG-4442-01 1 93602519 93602519 C T MTF2 Missense_Mutation p.R573C 0.40 deleterious(0) probably_damaging(0.989) TCGA-CG-4442-01 1 94360237 94360237 C T GCLM Missense_Mutation p.M196I 0.29 tolerated(0.08) benign(0.095) TCGA-CG-4442-01 1 9642611 9642611 T - SLC25A33 3'UTR 0.57 TCGA-CG-4442-01 1 97771791 97771791 A - DPYD Frame_Shift_Del p.F707Lfs*4 0.42 TCGA-CG-4442-01 20 16359766 16359766 C T KIF16B Missense_Mutation p.A961T 0.37 tolerated_low_confidence(0.12) benign(0.233) TCGA-CG-4442-01 20 18123412 18123412 G A CSRP2BP Silent p.T36T 0.41 TCGA-CG-4442-01 20 19955586 19955586 C - RIN2 Frame_Shift_Del p.P357Hfs*39 0.36 TCGA-CG-4442-01 20 20016830 20016830 A - CRNKL1 3'UTR 0.38 TCGA-CG-4442-01 20 21687475 21687475 C T PAX1 Missense_Mutation p.A229V 0.37 deleterious(0.03) benign(0.028) TCGA-CG-4442-01 20 2312896 2312896 G T TGM3 Missense_Mutation p.G528C 0.24 deleterious(0.03) probably_damaging(1) TCGA-CG-4442-01 20 23345195 23345195 T - GZF1 Frame_Shift_Del p.F60Lfs*20 0.38 TCGA-CG-4442-01 20 25456684 25456684 G A NINL Silent p.N1081N 0.37 TCGA-CG-4442-01 20 31017181 31017182 GA - ASXL1 Frame_Shift_Del p.V172Cfs*81 0.31 TCGA-CG-4442-01 20 31022442 31022442 G - ASXL1 Frame_Shift_Del p.G645Vfs*58 0.40 TCGA-CG-4442-01 20 31387087 31387087 G A DNMT3B Missense_Mutation p.R571Q 0.33 tolerated(0.62) probably_damaging(0.98) TCGA-CG-4442-01 20 31427577 31427577 C T MAPRE1 Missense_Mutation p.A171V 0.38 tolerated(0.38) benign(0.001) TCGA-CG-4442-01 20 32878616 32878616 G A AHCY Silent p.A229A 0.05 TCGA-CG-4442-01 20 33451198 33451198 G A GGT7 Missense_Mutation p.T108M 0.18 deleterious(0.02) probably_damaging(0.947) TCGA-CG-4442-01 20 33530761 33530761 C T GSS Silent p.K108K 0.28 TCGA-CG-4442-01 20 36627613 36627613 G - TTI1 Frame_Shift_Del p.L924Wfs*37 0.33 TCGA-CG-4442-01 20 3672650 3672650 C T SIGLEC1 Silent p.R1410R 0.39 TCGA-CG-4442-01 20 3684491 3684491 G - SIGLEC1 Frame_Shift_Del p.I319Sfs*12 0.39 TCGA-CG-4442-01 20 37078014 37078014 C T SNORA60 RNA 0.34 TCGA-CG-4442-01 20 37356949 37356949 C T SLC32A1 Silent p.R415R 0.39 TCGA-CG-4442-01 20 40739003 40739003 G - PTPRT Frame_Shift_Del p.P1075Rfs*6 0.37 TCGA-CG-4442-01 20 40911166 40911166 C T PTPRT Splice_Site p.X714_splice 0.38 TCGA-CG-4442-01 20 42252676 42252676 G T IFT52 Missense_Mutation p.S305I 0.31 tolerated(0.09) benign(0.009) TCGA-CG-4442-01 20 43058311 43058311 C T HNF4A 3'UTR 0.37 TCGA-CG-4442-01 20 43141554 43141554 A G SERINC3 Missense_Mutation p.Y95H 0.28 tolerated(0.21) probably_damaging(0.991) TCGA-CG-4442-01 20 43727239 43727239 G A KCNS1 Silent p.G58G 0.69 TCGA-CG-4442-01 20 44505669 44505669 T C ZSWIM3 Missense_Mutation p.S158P 0.27 tolerated(0.32) benign(0) TCGA-CG-4442-01 20 44747031 44747031 G A CD40 Missense_Mutation p.A17T 0.34 tolerated(0.12) benign(0.011) TCGA-CG-4442-01 20 44839105 44839105 C T CDH22 Missense_Mutation p.R376H 0.39 deleterious(0.01) benign(0.024) TCGA-CG-4442-01 20 45130215 45130215 A G ZNF334 Missense_Mutation p.V588A 0.21 tolerated(0.2) benign(0.138) TCGA-CG-4442-01 20 45188603 45188603 A G SLC13A3 3'UTR 0.10 TCGA-CG-4442-01 20 46265284 46265284 C T NCOA3 Silent p.D718D 0.40 TCGA-CG-4442-01 20 46282351 46282351 T - NCOA3 3'UTR 0.24 TCGA-CG-4442-01 20 48522877 48522877 G A SPATA2 Missense_Mutation p.T281M 0.34 deleterious(0.05) benign(0.008) TCGA-CG-4442-01 20 49510674 49510674 C A ADNP Missense_Mutation p.A193S 0.33 deleterious(0.05) possibly_damaging(0.597) TCGA-CG-4442-01 20 49510754 49510754 T C ADNP Missense_Mutation p.Y166C 0.27 deleterious(0.01) probably_damaging(0.995) TCGA-CG-4442-01 20 50705027 50705027 G A ZFP64 Missense_Mutation p.R181W 0.41 deleterious(0) probably_damaging(0.999) TCGA-CG-4442-01 20 50769628 50769628 T C ZFP64 Missense_Mutation p.D368G 0.04 deleterious(0.01) benign(0.016) TCGA-CG-4442-01 20 51872037 51872037 C T TSHZ2 Silent p.C680C 0.37 TCGA-CG-4442-01 20 52645436 52645436 G A BCAS1 Missense_Mutation p.A73V 0.45 deleterious(0.03) possibly_damaging(0.892) TCGA-CG-4442-01 20 5528289 5528289 A G GPCPD1 3'UTR 0.25 TCGA-CG-4442-01 20 56726009 56726009 C - C20orf85 5'UTR 0.33 TCGA-CG-4442-01 20 57597917 57597917 T C TUBB1 Silent p.G25G 0.43 TCGA-CG-4442-01 20 57769627 57769627 T C ZNF831 Missense_Mutation p.W1185R 0.36 deleterious(0) probably_damaging(0.998) TCGA-CG-4442-01 20 58467740 58467741 - T SYCP2 Frame_Shift_Ins p.D604Rfs*7 0.35 TCGA-CG-4442-01 20 58514148 58514148 C T PPP1R3D Missense_Mutation p.R280H 0.37 tolerated(0.27) benign(0.029) TCGA-CG-4442-01 20 60498546 60498546 C T CDH4 Missense_Mutation p.T471I 0.45 tolerated(0.15) benign(0.211) TCGA-CG-4442-01 20 60509183 60509183 C T CDH4 Missense_Mutation p.R817C 0.35 deleterious(0) possibly_damaging(0.893) TCGA-CG-4442-01 20 60887787 60887787 A G LAMA5 Missense_Mutation p.V3043A 0.50 benign(0.055) TCGA-CG-4442-01 20 61943318 61943318 G T COL20A1 Missense_Mutation p.A572S 0.31 tolerated(1) benign(0.003) TCGA-CG-4442-01 20 62196027 62196027 C A HELZ2 Missense_Mutation p.G1383V 0.36 deleterious(0.01) probably_damaging(0.987) TCGA-CG-4442-01 20 62598853 62598853 G A ZNF512B Nonsense_Mutation p.Q49* 0.33 TCGA-CG-4442-01 20 62729410 62729410 G A OPRL1 Silent p.T163T 0.39 TCGA-CG-4442-01 20 62738003 62738003 G A NPBWR2 Missense_Mutation p.T61I 0.43 tolerated(0.3) benign(0.003) TCGA-CG-4442-01 20 62839761 62839761 G A MYT1 Silent p.E404E 0.25 TCGA-CG-4442-01 20 62871118 62871118 C A MYT1 Silent p.S1033S 0.44 TCGA-CG-4442-01 20 8703048 8703048 A - PLCB1 Frame_Shift_Del p.K522Nfs*23 0.41 TCGA-CG-4442-01 21 10969127 10969127 G T TPTE Missense_Mutation p.P41T 0.17 tolerated(0.52) benign(0.026) TCGA-CG-4442-01 21 16338326 16338327 TC - NRIP1 Frame_Shift_Del p.K730Nfs*6 0.35 TCGA-CG-4442-01 21 22664426 22664426 C A NCAM2 Silent p.R162R 0.35 TCGA-CG-4442-01 21 31744414 31744414 G T KRTAP13-2 Missense_Mutation p.L40I 0.32 tolerated(0.07) benign(0.257) TCGA-CG-4442-01 21 34045776 34045776 G A SYNJ1 Nonsense_Mutation p.R573* 0.37 TCGA-CG-4442-01 21 43248570 43248570 A G PRDM15 Missense_Mutation p.F862L 0.03 deleterious(0) probably_damaging(0.999) TCGA-CG-4442-01 21 43411232 43411232 T C ZBTB21 Silent p.P991P 0.26 TCGA-CG-4442-01 21 44486452 44486452 C T CBS Missense_Mutation p.V118M 0.35 deleterious(0) probably_damaging(0.992) TCGA-CG-4442-01 21 44589164 44589164 G A CRYAA 5'UTR 0.50 TCGA-CG-4442-01 21 45401009 45401009 G A AGPAT3 Missense_Mutation p.G328D 0.06 tolerated(0.21) benign(0.003) TCGA-CG-4442-01 21 45540963 45540963 C T PWP2 Missense_Mutation p.T539M 0.31 deleterious(0.01) probably_damaging(0.978) TCGA-CG-4442-01 21 45666330 45666330 G - DNMT3L Frame_Shift_Del p.L372* 0.37 TCGA-CG-4442-01 21 45941887 45941887 A G TSPEAR Missense_Mutation p.F482S 0.25 deleterious(0) probably_damaging(0.993) TCGA-CG-4442-01 21 45959500 45959500 G - KRTAP10-1 Frame_Shift_Del p.C179Afs*149 0.38 TCGA-CG-4442-01 21 46228957 46228957 C T SUMO3 Intron 0.35 TCGA-CG-4442-01 21 47695152 47695152 C T MCM3AP Missense_Mutation p.R649Q 0.45 deleterious(0) probably_damaging(0.995) TCGA-CG-4442-01 22 17071787 17071787 T - CCT8L2 Frame_Shift_Del p.I552Sfs*4 0.41 TCGA-CG-4442-01 22 18022149 18022149 G A CECR2 Missense_Mutation p.V752I 0.30 tolerated(0.07) benign(0.333) TCGA-CG-4442-01 22 18347700 18347700 G A MICAL3 Missense_Mutation p.A857V 0.35 benign(0.005) TCGA-CG-4442-01 22 18604328 18604328 G A TUBA8 Missense_Mutation p.G29D 0.41 deleterious_low_confidence(0.03) benign(0.231) TCGA-CG-4442-01 22 19197931 19197931 C T CLTCL1 Missense_Mutation p.A1052T 0.38 deleterious(0.03) probably_damaging(1) TCGA-CG-4442-01 22 21064220 21064220 C T PI4KA Missense_Mutation p.R2050H 0.31 deleterious(0) probably_damaging(0.968) TCGA-CG-4442-01 22 21342386 21342386 C T LZTR1 Missense_Mutation p.T163M 0.33 deleterious(0.04) benign(0.34) TCGA-CG-4442-01 22 21989291 21989291 G A CCDC116 Silent p.L313L 0.35 TCGA-CG-4442-01 22 22025326 22025326 G A PPIL2 Missense_Mutation p.D57N 0.33 tolerated(0.11) benign(0.015) TCGA-CG-4442-01 22 22569487 22569487 A C IGLV10-54 Missense_Mutation p.Q60P 0.22 tolerated_low_confidence(1) benign(0) TCGA-CG-4442-01 22 23090366 23090366 C T IGLV3-16 Missense_Mutation p.A102V 0.39 deleterious(0.01) probably_damaging(0.975) TCGA-CG-4442-01 22 24579170 24579170 C T SUSD2 Silent p.G74G 0.32 TCGA-CG-4442-01 22 24659671 24659671 C T POM121L9P RNA 0.13 TCGA-CG-4442-01 22 24981946 24981946 C A FAM211B Missense_Mutation p.G286C 0.37 deleterious(0.01) possibly_damaging(0.897) TCGA-CG-4442-01 22 25771899 25771899 A C LRP5L 5'UTR 0.46 TCGA-CG-4442-01 22 26423476 26423476 C T MYO18B Silent p.S2512S 0.37 TCGA-CG-4442-01 22 26849090 26849090 A - HPS4 3'UTR 0.34 TCGA-CG-4442-01 22 29490351 29490351 A G KREMEN1 Missense_Mutation p.Y68C 0.17 deleterious(0) probably_damaging(0.996) TCGA-CG-4442-01 22 29913074 29913074 G A THOC5 Missense_Mutation p.A542V 0.36 tolerated(0.14) benign(0) TCGA-CG-4442-01 22 30412615 30412615 T C MTMR3 Silent p.C534C 0.28 TCGA-CG-4442-01 22 30640888 30640888 T C LIF Silent p.K18K 0.07 TCGA-CG-4442-01 22 31059826 31059826 C A DUSP18 Missense_Mutation p.E55D 0.04 tolerated(0.1) benign(0.012) TCGA-CG-4442-01 22 31737553 31737553 G A PATZ1 Intron 0.35 TCGA-CG-4442-01 22 32021813 32021813 G T PISD 5'UTR 0.55 TCGA-CG-4442-01 22 32586740 32586741 - T RFPL2 3'UTR 0.30 TCGA-CG-4442-01 22 33255324 33255324 C - TIMP3 Frame_Shift_Del p.P201Rfs*26 0.39 TCGA-CG-4442-01 22 36623411 36623411 G A APOL2 3'UTR 0.31 TCGA-CG-4442-01 22 37769104 37769104 G - ELFN2 3'UTR 0.28 TCGA-CG-4442-01 22 37914037 37914037 G T CARD10 Missense_Mutation p.P105H 0.32 deleterious(0) probably_damaging(1) TCGA-CG-4442-01 22 38369825 38369825 T C SOX10 Missense_Mutation p.T360A 0.38 tolerated(0.16) benign(0) TCGA-CG-4442-01 22 38503898 38503899 AG - BAIAP2L2 Frame_Shift_Del p.S79* 0.44 TCGA-CG-4442-01 22 38621482 38621482 C T TMEM184B Missense_Mutation p.V246I 0.31 tolerated(0.07) benign(0.202) TCGA-CG-4442-01 22 39262317 39262317 G A CBX6 Missense_Mutation p.T379M 0.35 deleterious(0) probably_damaging(0.93) TCGA-CG-4442-01 22 39772162 39772162 G A SYNGR1 Missense_Mutation p.R148Q 0.37 deleterious(0.01) probably_damaging(1) TCGA-CG-4442-01 22 40064344 40064344 C T CACNA1I Silent p.N1384N 0.23 TCGA-CG-4442-01 22 41545781 41545782 - T EP300 Frame_Shift_Ins p.S800Ffs*38 0.37 TCGA-CG-4442-01 22 41574817 41574817 G A EP300 Missense_Mutation p.D2368N 0.36 benign(0.354) TCGA-CG-4442-01 22 42972105 42972107 CCT - SERHL2 3'Flank 0.32 TCGA-CG-4442-01 22 44892592 44892592 G A LDOC1L 3'UTR 0.37 TCGA-CG-4442-01 22 46611162 46611162 G A PPARA Missense_Mutation p.E101K 0.28 deleterious(0.01) probably_damaging(0.959) TCGA-CG-4442-01 22 46780469 46780469 G A CELSR1 Missense_Mutation p.A2285V 0.33 tolerated(0.24) benign(0.309) TCGA-CG-4442-01 22 47188443 47188444 - C TBC1D22A Frame_Shift_Ins p.F33Lfs*2 0.35 TCGA-CG-4442-01 22 50280682 50280682 C - ZBED4 Frame_Shift_Del p.P1126Qfs*25 0.38 TCGA-CG-4442-01 22 50588009 50588009 G A MOV10L1 Intron 0.27 TCGA-CG-4442-01 22 50682331 50682331 T C TUBGCP6 Silent p.P186P 0.23 TCGA-CG-4442-01 22 50720088 50720088 C A PLXNB2 Silent p.T1143T 0.39 TCGA-CG-4442-01 22 50869710 50869710 G A PPP6R2 Missense_Mutation p.G413R 0.33 tolerated(0.13) benign(0.049) TCGA-CG-4442-01 22 50987578 50987578 G A KLHDC7B Missense_Mutation p.R328Q 0.37 tolerated(1) benign(0.001) TCGA-CG-4442-01 22 50987635 50987635 G A KLHDC7B Missense_Mutation p.C347Y 0.36 deleterious(0) probably_damaging(0.999) TCGA-CG-4442-01 2 101565870 101565870 A G NPAS2 Missense_Mutation p.S176G 0.05 deleterious(0) possibly_damaging(0.832) TCGA-CG-4442-01 2 102476242 102476242 A G MAP4K4 Silent p.P540P 0.33 TCGA-CG-4442-01 2 102793273 102793273 G T IL1R1 3'UTR 0.32 TCGA-CG-4442-01 2 10566920 10566920 C T HPCAL1 Silent p.C185C 0.32 TCGA-CG-4442-01 2 106717534 106717534 C T UXS1 Missense_Mutation p.V322I 0.30 tolerated(0.36) benign(0.003) TCGA-CG-4442-01 2 108994805 108994805 C T SULT1C4 Silent p.H4H 0.34 TCGA-CG-4442-01 2 112601029 112601029 A G ANAPC1 Missense_Mutation p.M667T 0.32 deleterious(0) benign(0.039) TCGA-CG-4442-01 2 112621311 112621311 T C ANAPC1 Silent p.S331S 0.34 TCGA-CG-4442-01 2 112945273 112945273 C T FBLN7 3'UTR 0.45 TCGA-CG-4442-01 2 113742478 113742478 G A IL36G Missense_Mutation p.R121H 0.32 tolerated(1) benign(0.011) TCGA-CG-4442-01 2 114257884 114257884 T C FOXD4L1 Missense_Mutation p.Y351H 0.23 tolerated_low_confidence(0.08) possibly_damaging(0.854) TCGA-CG-4442-01 2 114512832 114512832 A G SLC35F5 Silent p.S61S 0.24 TCGA-CG-4442-01 2 116520172 116520172 T C DPP10 Missense_Mutation p.W371R 0.34 deleterious(0) probably_damaging(1) TCGA-CG-4442-01 2 11809758 11809758 G A NTSR2 Silent p.L166L 0.28 TCGA-CG-4442-01 2 121743918 121743918 C - GLI2 Frame_Shift_Del p.N676Tfs*19 0.08 TCGA-CG-4442-01 2 125192170 125192170 A T CNTNAP5 Missense_Mutation p.Q213H 0.39 deleterious(0.02) benign(0.175) TCGA-CG-4442-01 2 127952980 127952980 C A CYP27C1 Missense_Mutation p.R217M 0.42 tolerated(0.06) possibly_damaging(0.643) TCGA-CG-4442-01 2 128186037 128186037 G A PROC Missense_Mutation p.A301T 0.35 deleterious(0) probably_damaging(0.998) TCGA-CG-4442-01 2 128400603 128400603 A G LIMS2 Missense_Mutation p.L159P 0.58 tolerated(0.06) probably_damaging(0.999) TCGA-CG-4442-01 2 128712741 128712741 G A SAP130 Silent p.A773A 0.37 TCGA-CG-4442-01 2 130897150 130897150 C T CCDC74B Missense_Mutation p.R374H 0.25 deleterious(0) probably_damaging(0.998) TCGA-CG-4442-01 2 130951615 130951615 A G TUBA3E Missense_Mutation p.F267S 0.25 deleterious_low_confidence(0) probably_damaging(1) TCGA-CG-4442-01 2 131812907 131812907 G - FAM168B Frame_Shift_Del p.P138Lfs*25 0.36 TCGA-CG-4442-01 2 133542601 133542601 T A NCKAP5 Missense_Mutation p.S595C 0.22 deleterious(0) probably_damaging(0.999) TCGA-CG-4442-01 2 138208468 138208468 G A THSD7B Missense_Mutation p.D1005N 0.34 deleterious(0) unknown(0) TCGA-CG-4442-01 2 138738852 138738852 G A HNMT Intron 0.38 TCGA-CG-4442-01 2 141115624 141115624 T - LRP1B Frame_Shift_Del p.K3773Nfs*26 0.37 TCGA-CG-4442-01 2 141458106 141458106 G A LRP1B Missense_Mutation p.A2171V 0.03 possibly_damaging(0.483) TCGA-CG-4442-01 2 143798151 143798151 G - KYNU Frame_Shift_Del p.C401Afs*3 0.31 TCGA-CG-4442-01 2 145156685 145156685 T C ZEB2 Missense_Mutation p.E690G 0.29 deleterious(0.01) benign(0.051) TCGA-CG-4442-01 2 148683686 148683687 AA - ACVR2A Frame_Shift_Del p.K437Efs*19 0.38 TCGA-CG-4442-01 2 149861973 149861973 A - KIF5C Frame_Shift_Del p.S816Vfs*68 0.32 TCGA-CG-4442-01 2 152285379 152285379 A - RIF1 Frame_Shift_Del p.K291Rfs*2 0.23 TCGA-CG-4442-01 2 1544465 1544465 G A TPO Silent p.P906P 0.34 TCGA-CG-4442-01 2 157425876 157425876 T C GPD2 Silent p.G434G 0.34 TCGA-CG-4442-01 2 158634684 158634684 C T ACVR1 Missense_Mutation p.E168K 0.34 tolerated(0.1) benign(0.054) TCGA-CG-4442-01 2 159195152 159195152 A G CCDC148 Intron 0.41 TCGA-CG-4442-01 2 1670198 1670198 G A PXDN Missense_Mutation p.T360M 0.13 deleterious(0.03) probably_damaging(0.982) TCGA-CG-4442-01 2 168104267 168104267 G A XIRP2 Missense_Mutation p.G2122E 0.40 benign(0.05) TCGA-CG-4442-01 2 168107832 168107832 G T XIRP2 Missense_Mutation p.Q3310H 0.40 benign(0.087) TCGA-CG-4442-01 2 1684063 1684063 G A PXDN Missense_Mutation p.A211V 0.37 tolerated(0.09) benign(0.007) TCGA-CG-4442-01 2 169828384 169828384 G T ABCB11 Silent p.A537A 0.28 TCGA-CG-4442-01 2 170134319 170134319 G A LRP2 Missense_Mutation p.R570C 0.42 probably_damaging(1) TCGA-CG-4442-01 2 170361115 170361115 T C BBS5 3'UTR 0.33 TCGA-CG-4442-01 2 170488344 170488344 T A PPIG Missense_Mutation p.I277N 0.06 deleterious(0) unknown(0) TCGA-CG-4442-01 2 170558005 170558005 T A PHOSPHO2 Missense_Mutation p.V175D 0.03 deleterious(0) possibly_damaging(0.851) TCGA-CG-4442-01 2 172966181 172966181 G A DLX2 Intron 0.38 TCGA-CG-4442-01 2 173338908 173338910 CTC - ITGA6 In_Frame_Del p.L302del 0.51 TCGA-CG-4442-01 2 176964613 176964613 C T HOXD12 Silent p.N28N 0.34 TCGA-CG-4442-01 2 176981694 176981694 A G HOXD10 Missense_Mutation p.T45A 0.32 tolerated(0.2) benign(0.004) TCGA-CG-4442-01 2 179399998 179399998 T C TTN Missense_Mutation p.T33782A 0.34 TCGA-CG-4442-01 2 179407619 179407619 C T TTN Missense_Mutation p.G32321D 0.36 TCGA-CG-4442-01 2 179451992 179451992 C T TTN Missense_Mutation p.V21316I 0.33 TCGA-CG-4442-01 2 179471746 179471746 A G TTN Splice_Site p.X17861_splice 0.34 TCGA-CG-4442-01 2 179485917 179485917 T C TTN Silent p.L15176L 0.43 TCGA-CG-4442-01 2 179486301 179486301 T C TTN Missense_Mutation p.K15084E 0.42 TCGA-CG-4442-01 2 179599675 179599675 T C TTN Silent p.L4992L 0.46 TCGA-CG-4442-01 2 179614709 179614709 T C TTN Intron 0.35 TCGA-CG-4442-01 2 17998228 17998228 G A MSGN1 Missense_Mutation p.R148Q 0.31 deleterious(0) probably_damaging(0.998) TCGA-CG-4442-01 2 181846888 181846890 CTT - UBE2E3 In_Frame_Del p.S41del 0.50 TCGA-CG-4442-01 2 182468750 182468751 AT - CERKL Frame_Shift_Del p.F99Lfs*11 0.30 TCGA-CG-4442-01 2 182543033 182543033 C T NEUROD1 Silent p.A185A 0.37 TCGA-CG-4442-01 2 183860523 183860523 C T NCKAP1 Missense_Mutation p.R222Q 0.37 tolerated(0.05) possibly_damaging(0.606) TCGA-CG-4442-01 2 188332652 188332652 G T TFPI Missense_Mutation p.H212Q 0.31 tolerated(0.31) benign(0.009) TCGA-CG-4442-01 2 191847230 191847232 GAA - STAT1 In_Frame_Del p.F487del 0.39 TCGA-CG-4442-01 2 196746682 196746682 A G DNAH7 Missense_Mutation p.L1933S 0.35 deleterious(0) possibly_damaging(0.691) TCGA-CG-4442-01 2 197672182 197672182 A G C2orf66 Silent p.N113N 0.39 TCGA-CG-4442-01 2 20130156 20130156 C T WDR35 Splice_Site p.X1052_splice 0.34 TCGA-CG-4442-01 2 201437004 201437004 T - SGOL2 Frame_Shift_Del p.F648Sfs*14 0.31 TCGA-CG-4442-01 2 201683505 201683505 A - BZW1 Frame_Shift_Del p.N317Tfs*11 0.34 TCGA-CG-4442-01 2 202082648 202082648 T - CASP10 3'UTR 0.37 TCGA-CG-4442-01 2 203156114 203156114 T A NOP58 Intron 0.37 TCGA-CG-4442-01 2 20451242 20451242 A - PUM2 3'UTR 0.31 TCGA-CG-4442-01 2 204735621 204735621 T C CTLA4 Missense_Mutation p.L141P 0.31 tolerated(0.17) benign(0.133) TCGA-CG-4442-01 2 206050586 206050586 A G PARD3B Missense_Mutation p.S613G 0.38 deleterious(0.02) possibly_damaging(0.794) TCGA-CG-4442-01 2 206166298 206166298 A - PARD3B Frame_Shift_Del p.T775Rfs*13 0.35 TCGA-CG-4442-01 2 207174184 207174184 T C ZDBF2 Silent p.D1644D 0.39 TCGA-CG-4442-01 2 207310055 207310055 A - ADAM23 Frame_Shift_Del p.N82Ifs*87 0.39 TCGA-CG-4442-01 2 208477876 208477878 AAG - METTL21A In_Frame_Del p.F183del 0.52 TCGA-CG-4442-01 2 20870891 20870891 G A GDF7 Silent p.P353P 0.52 TCGA-CG-4442-01 2 213872794 213872794 G A IKZF2 Nonsense_Mutation p.R291* 0.24 TCGA-CG-4442-01 2 218673324 218673324 A T TNS1 Splice_Site p.X1677_splice 0.33 TCGA-CG-4442-01 2 218682650 218682650 T G TNS1 Missense_Mutation p.S1365R 0.38 tolerated(0.12) benign(0.279) TCGA-CG-4442-01 2 218682831 218682831 G A TNS1 Silent p.L1304L 0.35 TCGA-CG-4442-01 2 219528977 219528977 G A RNF25 Silent p.H361H 0.23 TCGA-CG-4442-01 2 219559251 219559251 G A STK36 Missense_Mutation p.A802T 0.30 deleterious(0) probably_damaging(0.991) TCGA-CG-4442-01 2 219561249 219561249 G T STK36 Splice_Site p.X838_splice 0.36 TCGA-CG-4442-01 2 219856929 219856929 C T CRYBA2 Silent p.Q66Q 0.23 TCGA-CG-4442-01 2 219892637 219892637 G - CCDC108 Frame_Shift_Del p.P649Rfs*5 0.46 TCGA-CG-4442-01 2 223553067 223553067 G A MOGAT1 Silent p.P33P 0.35 TCGA-CG-4442-01 2 224842297 224842297 T C SERPINE2 Missense_Mutation p.R386G 0.40 deleterious(0) possibly_damaging(0.9) TCGA-CG-4442-01 2 225360635 225360635 T C CUL3 Missense_Mutation p.N586D 0.04 tolerated(0.3) benign(0.003) TCGA-CG-4442-01 2 230723776 230723776 A G TRIP12 Missense_Mutation p.S205P 0.05 tolerated_low_confidence(0.09) probably_damaging(0.939) TCGA-CG-4442-01 2 231775790 231775790 A G GPR55 5'UTR 0.31 TCGA-CG-4442-01 2 232458157 232458157 G A C2orf57 Silent p.Q165Q 0.43 TCGA-CG-4442-01 2 232573391 232573391 G A PTMA 5'UTR 0.38 TCGA-CG-4442-01 2 233392150 233392150 G T CHRND Nonsense_Mutation p.E80* 0.35 TCGA-CG-4442-01 2 234835246 234835246 C T TRPM8 Missense_Mutation p.R22W 0.30 deleterious(0) benign(0.38) TCGA-CG-4442-01 2 235404565 235404568 CATC - ARL4C 3'UTR 0.36 TCGA-CG-4442-01 2 237029052 237029052 C T AGAP1 Silent p.C777C 0.38 TCGA-CG-4442-01 2 239079047 239079047 A - ILKAP 3'UTR 0.33 TCGA-CG-4442-01 2 240029856 240029856 G C HDAC4 Missense_Mutation p.L663V 0.35 deleterious(0.01) benign(0.014) TCGA-CG-4442-01 2 240048352 240048352 C T HDAC4 Missense_Mutation p.A440T 0.30 tolerated(0.19) benign(0.002) TCGA-CG-4442-01 2 240954271 240954271 T C NDUFA10 Missense_Mutation p.D185G 0.38 deleterious(0.01) possibly_damaging(0.685) TCGA-CG-4442-01 2 241516004 241516004 G A RNPEPL1 Silent p.P290P 0.41 TCGA-CG-4442-01 2 242092999 242092999 G - PPP1R7 Frame_Shift_Del p.E56Rfs*28 0.44 TCGA-CG-4442-01 2 242176107 242176107 C T HDLBP Missense_Mutation p.G943S 0.38 tolerated(0.78) benign(0.006) TCGA-CG-4442-01 2 242815392 242815392 G A CXXC11 Missense_Mutation p.R562Q 0.37 tolerated(0.06) possibly_damaging(0.53) TCGA-CG-4442-01 2 25016261 25016261 G - CENPO 5'UTR 0.38 TCGA-CG-4442-01 2 25384348 25384348 T C POMC Missense_Mutation p.K136E 0.27 deleterious(0) probably_damaging(0.996) TCGA-CG-4442-01 2 25523110 25523110 G A DNMT3A Silent p.D25D 0.34 TCGA-CG-4442-01 2 26684657 26684657 T C OTOF Missense_Mutation p.M1814V 0.35 tolerated(0.28) benign(0.012) TCGA-CG-4442-01 2 27306603 27306603 A C EMILIN1 Missense_Mutation p.S722R 0.27 benign(0.265) TCGA-CG-4442-01 2 27591882 27591882 T G EIF2B4 Missense_Mutation p.T157P 0.31 tolerated(0.31) benign(0.002) TCGA-CG-4442-01 2 27801187 27801187 C T C2orf16 Missense_Mutation p.T583I 0.38 deleterious(0.01) benign(0.004) TCGA-CG-4442-01 2 31360999 31360999 C - GALNT14 5'UTR 0.39 TCGA-CG-4442-01 2 32961876 32961876 A G TTC27 Missense_Mutation p.H482R 0.42 tolerated(0.11) benign(0.001) TCGA-CG-4442-01 2 33359778 33359778 T - LTBP1 Intron 0.39 TCGA-CG-4442-01 2 3687869 3687869 T C COLEC11 Silent p.G106G 0.29 TCGA-CG-4442-01 2 39095333 39095333 C T DHX57 Missense_Mutation p.R72H 0.32 tolerated_low_confidence(0.22) benign(0.002) TCGA-CG-4442-01 2 42281307 42281307 C T PKDCC Silent p.D298D 0.43 TCGA-CG-4442-01 2 43452623 43452623 C - ZFP36L2 Frame_Shift_Del p.G107Afs*80 0.29 TCGA-CG-4442-01 2 47135054 47135054 C T MCFD2 Silent p.S68S 0.28 TCGA-CG-4442-01 2 54164655 54164655 C T PSME4 Missense_Mutation p.A190T 0.38 tolerated(0.13) benign(0.001) TCGA-CG-4442-01 2 54895695 54895695 A - SPTBN1 Frame_Shift_Del p.K2363Rfs*59 0.37 TCGA-CG-4442-01 2 55561924 55561925 - T CCDC88A Frame_Shift_Ins p.T678Nfs*4 0.33 TCGA-CG-4442-01 2 63176204 63176205 - A EHBP1 Frame_Shift_Ins p.H779Tfs*10 0.34 TCGA-CG-4442-01 2 66798467 66798467 C - MEIS1 3'UTR 0.41 TCGA-CG-4442-01 2 68692195 68692195 T - FBXO48 Frame_Shift_Del p.N28Mfs*33 0.31 TCGA-CG-4442-01 2 69741805 69741805 T G AAK1 Missense_Mutation p.Q525P 0.41 tolerated(0.13) benign(0.153) TCGA-CG-4442-01 2 70933540 70933540 T - ADD2 Frame_Shift_Del p.M1? 0.47 TCGA-CG-4442-01 2 7160687 7160688 - C RNF144A Frame_Shift_Ins p.Q131Pfs*49 0.38 TCGA-CG-4442-01 2 74128517 74128518 - C ACTG2 Frame_Shift_Ins p.R29Pfs*30 0.34 TCGA-CG-4442-01 2 74274090 74274090 A - TET3 Frame_Shift_Del p.N216Tfs*190 0.40 TCGA-CG-4442-01 2 74702431 74702431 C T CCDC142 Missense_Mutation p.A566T 0.32 deleterious(0.02) possibly_damaging(0.641) TCGA-CG-4442-01 2 74746779 74746779 C T DQX1 Missense_Mutation p.M570I 0.36 tolerated(0.13) possibly_damaging(0.871) TCGA-CG-4442-01 2 74747154 74747155 - G DQX1 Frame_Shift_Ins p.G502Wfs*24 0.43 TCGA-CG-4442-01 2 75347784 75347784 T C TACR1 Missense_Mutation p.Y167C 0.27 deleterious(0.01) probably_damaging(0.914) TCGA-CG-4442-01 2 80773145 80773145 C T CTNNA2 Silent p.A499A 0.37 TCGA-CG-4442-01 2 84668521 84668521 A G SUCLG1 Silent p.A127A 0.36 TCGA-CG-4442-01 2 85536512 85536512 C T TCF7L1 Missense_Mutation p.T565M 0.28 tolerated_low_confidence(0.07) benign(0.266) TCGA-CG-4442-01 2 85779652 85779652 G A GGCX Silent p.D442D 0.41 TCGA-CG-4442-01 2 95481689 95481689 T A ANKRD20A8P RNA 0.04 TCGA-CG-4442-01 2 95537771 95537771 C T TEKT4 Silent p.R149R 0.46 TCGA-CG-4442-01 2 96956125 96956125 A G SNRNP200 Missense_Mutation p.V894A 0.33 deleterious(0.03) benign(0.397) TCGA-CG-4442-01 2 97368419 97368419 C T LMAN2L 3'Flank 0.15 TCGA-CG-4442-01 2 98354255 98354255 C T ZAP70 Silent p.Y506Y 0.32 TCGA-CG-4442-01 2 99232795 99232795 T - UNC50 Frame_Shift_Del p.F178Sfs*7 0.40 TCGA-CG-4442-01 2 99695187 99695187 G T TSGA10 Missense_Mutation p.L273M 0.38 deleterious(0) probably_damaging(0.984) TCGA-CG-4442-01 2 99936110 99936110 A - TXNDC9 3'UTR 0.37 TCGA-CG-4442-01 3 100413713 100413713 G A GPR128 Silent p.R754R 0.35 TCGA-CG-4442-01 3 101481356 101481356 T C CEP97 Silent p.R615R 0.04 TCGA-CG-4442-01 3 101540823 101540823 A T NXPE3 3'UTR 0.41 TCGA-CG-4442-01 3 10452437 10452437 G A ATP2B2 Missense_Mutation p.P88S 0.34 deleterious(0.01) probably_damaging(0.998) TCGA-CG-4442-01 3 105252520 105252520 A G ALCAM Missense_Mutation p.H178R 0.24 tolerated(0.64) benign(0.003) TCGA-CG-4442-01 3 105470339 105470339 A G CBLB Silent p.V230V 0.30 TCGA-CG-4442-01 3 108072520 108072520 C T HHLA2 Missense_Mutation p.A104V 0.42 deleterious(0) probably_damaging(0.941) TCGA-CG-4442-01 3 110852716 110852716 G A PVRL3 Missense_Mutation p.R435H 0.40 tolerated(0.18) probably_damaging(0.991) TCGA-CG-4442-01 3 113179491 113179491 T A SPICE1 Missense_Mutation p.T470S 0.29 tolerated(0.29) benign(0.167) TCGA-CG-4442-01 3 114058003 114058003 G - ZBTB20 Frame_Shift_Del p.P692Lfs*43 0.45 TCGA-CG-4442-01 3 118909928 118909928 A G UPK1B Missense_Mutation p.T149A 0.04 tolerated(0.45) benign(0.085) TCGA-CG-4442-01 3 119531741 119531741 T C NR1I2 Missense_Mutation p.M282T 0.39 deleterious(0) benign(0.276) TCGA-CG-4442-01 3 121206385 121206385 G T POLQ Missense_Mutation p.P1798H 0.33 deleterious(0.01) possibly_damaging(0.838) TCGA-CG-4442-01 3 121260235 121260235 G T POLQ Silent p.P145P 0.39 TCGA-CG-4442-01 3 121340411 121340412 - T FBXO40 Frame_Shift_Ins p.H47Pfs*62 0.40 TCGA-CG-4442-01 3 123813647 123813647 C T KALRN 5'UTR 0.35 TCGA-CG-4442-01 3 124492710 124492710 G A ITGB5 Silent p.I581I 0.32 TCGA-CG-4442-01 3 126137587 126137587 A G CCDC37 Missense_Mutation p.N207S 0.61 deleterious(0.05) probably_damaging(0.966) TCGA-CG-4442-01 3 126268739 126268739 G A C3orf22 Missense_Mutation p.A133V 0.34 tolerated(0.71) possibly_damaging(0.873) TCGA-CG-4442-01 3 127339714 127339714 C G MCM2 Missense_Mutation p.S813R 0.35 tolerated(0.08) benign(0.09) TCGA-CG-4442-01 3 128810045 128810045 G A RAB43 Missense_Mutation p.T178M 0.27 tolerated(0.12) probably_damaging(0.95) TCGA-CG-4442-01 3 130422668 130422668 A G PIK3R4 Silent p.I999I 0.31 TCGA-CG-4442-01 3 130463961 130463961 A G PIK3R4 Silent p.S34S 0.36 TCGA-CG-4442-01 3 130717188 130717188 C T ATP2C1 Silent p.C848C 0.33 TCGA-CG-4442-01 3 132071668 132071668 G A ACPP Splice_Site p.X323_splice 0.29 TCGA-CG-4442-01 3 133476714 133476714 C - TF Frame_Shift_Del p.R327Gfs*35 0.30 TCGA-CG-4442-01 3 13359163 13359163 C T NUP210 3'UTR 0.30 TCGA-CG-4442-01 3 135871342 135871344 AGA - MSL2 In_Frame_Del p.S127del 0.40 TCGA-CG-4442-01 3 142217557 142217557 T - ATR Frame_Shift_Del p.R1814Efs*10 0.36 TCGA-CG-4442-01 3 148597629 148597629 G A CPA3 Missense_Mutation p.A177T 0.38 deleterious(0) probably_damaging(0.947) TCGA-CG-4442-01 3 150176477 150176477 C T TSC22D2 3'UTR 0.34 TCGA-CG-4442-01 3 150421613 150421613 A C FAM194A Missense_Mutation p.L25V 0.26 tolerated_low_confidence(0.33) benign(0.001) TCGA-CG-4442-01 3 150460129 150460129 G A SIAH2 Silent p.A258A 0.38 TCGA-CG-4442-01 3 151055936 151055936 T - P2RY12 Frame_Shift_Del p.K233Rfs*2 0.37 TCGA-CG-4442-01 3 151129094 151129094 G A MED12L Missense_Mutation p.G1945E 0.34 tolerated_low_confidence(0.09) possibly_damaging(0.653) TCGA-CG-4442-01 3 153993898 153993898 A C DHX36 3'UTR 0.47 TCGA-CG-4442-01 3 154861271 154861271 C T MME Missense_Mutation p.R410C 0.42 deleterious(0.01) possibly_damaging(0.783) TCGA-CG-4442-01 3 160964183 160964183 T - NMD3 Frame_Shift_Del p.C361Vfs*9 0.37 TCGA-CG-4442-01 3 167045770 167045770 A G ZBBX Silent p.H274H 0.36 TCGA-CG-4442-01 3 170013723 170013723 T A PRKCI Missense_Mutation p.I481K 0.05 deleterious(0) benign(0.423) TCGA-CG-4442-01 3 17208262 17208262 T C TBC1D5 Silent p.K719K 0.04 TCGA-CG-4442-01 3 172165646 172165646 G A GHSR Silent p.H186H 0.10 TCGA-CG-4442-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.40 tolerated(0.11) possibly_damaging(0.529) TCGA-CG-4442-01 3 179123026 179123026 C T GNB4 Missense_Mutation p.D290N 0.34 tolerated(0.44) possibly_damaging(0.685) TCGA-CG-4442-01 3 179472611 179472611 C - USP13 Frame_Shift_Del p.I633* 0.39 TCGA-CG-4442-01 3 184035509 184035509 G A EIF4G1 Missense_Mutation p.R117H 0.43 tolerated(0.1) probably_damaging(0.984) TCGA-CG-4442-01 3 184042123 184042123 T C EIF4G1 Silent p.D876D 0.41 TCGA-CG-4442-01 3 184071569 184071569 C T CLCN2 Missense_Mutation p.R579H 0.24 tolerated(0.15) probably_damaging(0.999) TCGA-CG-4442-01 3 184073515 184073516 GA T CLCN2 Frame_Shift_Del p.F379Yfs*37 0.08 TCGA-CG-4442-01 3 190105879 190105879 C T CLDN16 5'UTR 0.35 TCGA-CG-4442-01 3 193334982 193334982 C T OPA1 Missense_Mutation p.A155V 0.26 tolerated(0.47) benign(0.004) TCGA-CG-4442-01 3 194062086 194062086 C T CPN2 Missense_Mutation p.R449Q 0.30 tolerated(0.65) benign(0.018) TCGA-CG-4442-01 3 194169309 194169309 C A ATP13A3 Nonsense_Mutation p.G343* 0.31 TCGA-CG-4442-01 3 195404699 195404699 C T SDHAP2 RNA 0.24 TCGA-CG-4442-01 3 196199224 196199224 G T RNF168 Silent p.S394S 0.34 TCGA-CG-4442-01 3 19974823 19974823 T G EFHB Silent p.R230R 0.30 TCGA-CG-4442-01 3 20194018 20194018 T - KAT2B 3'UTR 0.33 TCGA-CG-4442-01 3 24185077 24185077 T C THRB Missense_Mutation p.E218G 0.43 tolerated(0.07) benign(0.103) TCGA-CG-4442-01 3 33602361 33602361 T - CLASP2 Frame_Shift_Del p.M965Wfs*33 0.37 TCGA-CG-4442-01 3 36873314 36873314 C T TRANK1 Missense_Mutation p.R2543H 0.34 tolerated(0.35) benign(0.002) TCGA-CG-4442-01 3 36875321 36875321 T A TRANK1 Missense_Mutation p.Y1874F 0.25 deleterious(0) possibly_damaging(0.756) TCGA-CG-4442-01 3 38139378 38139378 G T DLEC1 Missense_Mutation p.Q903H 0.42 tolerated(0.06) possibly_damaging(0.605) TCGA-CG-4442-01 3 38287635 38287635 C T OXSR1 Nonsense_Mutation p.Q394* 0.31 TCGA-CG-4442-01 3 39107318 39107318 C T WDR48 Missense_Mutation p.A69V 0.38 tolerated(0.63) benign(0.021) TCGA-CG-4442-01 3 43122150 43122150 G A POMGNT2 Silent p.L258L 0.29 TCGA-CG-4442-01 3 44434452 44434452 G T TCAIM Missense_Mutation p.L226F 0.28 tolerated(0.35) possibly_damaging(0.58) TCGA-CG-4442-01 3 44434453 44434453 C T TCAIM Nonsense_Mutation p.Q227* 0.28 TCGA-CG-4442-01 3 44683855 44683855 G A ZNF197 Silent p.S411S 0.42 TCGA-CG-4442-01 3 44684845 44684845 G T ZNF197 Missense_Mutation p.K741N 0.39 deleterious(0) probably_damaging(0.997) TCGA-CG-4442-01 3 47451532 47451532 C - PTPN23 Frame_Shift_Del p.P750Lfs*53 0.38 TCGA-CG-4442-01 3 47719787 47719787 C T SMARCC1 Missense_Mutation p.R491Q 0.34 deleterious(0) probably_damaging(1) TCGA-CG-4442-01 3 47888976 47888976 G A DHX30 Missense_Mutation p.R687H 0.19 tolerated(0.09) benign(0.056) TCGA-CG-4442-01 3 47891116 47891116 C A DHX30 Intron 0.32 TCGA-CG-4442-01 3 48508191 48508192 - C TREX1 Frame_Shift_Ins p.T104Hfs*53 0.30 TCGA-CG-4442-01 3 48628108 48628108 C T COL7A1 Missense_Mutation p.R593Q 0.44 unknown(0) TCGA-CG-4442-01 3 48631901 48631901 C T COL7A1 Missense_Mutation p.E56K 0.43 unknown(0) TCGA-CG-4442-01 3 48636573 48636573 C T UQCRC1 Nonsense_Mutation p.W477* 0.37 TCGA-CG-4442-01 3 48659073 48659073 C - TMEM89 Frame_Shift_Del p.C40Vfs*13 0.36 TCGA-CG-4442-01 3 48677916 48677916 T G CELSR3 Silent p.A3034A 0.38 TCGA-CG-4442-01 3 49459855 49459855 C T AMT Missense_Mutation p.R10H 0.39 tolerated_low_confidence(0.39) benign(0.001) TCGA-CG-4442-01 3 49700719 49700719 C A BSN Missense_Mutation p.R3710S 0.40 unknown(0) TCGA-CG-4442-01 3 49714427 49714427 C - APEH Frame_Shift_Del p.H325Ifs*21 0.36 TCGA-CG-4442-01 3 49736480 49736480 G A RNF123 Missense_Mutation p.A236T 0.32 tolerated(0.26) probably_damaging(0.999) TCGA-CG-4442-01 3 49842011 49842011 G A FAM212A Missense_Mutation p.R152Q 0.45 deleterious(0) probably_damaging(0.996) TCGA-CG-4442-01 3 50005145 50005145 G - RBM6 Frame_Shift_Del p.G98Efs*56 0.34 TCGA-CG-4442-01 3 50293689 50293689 G A GNAI2 Missense_Mutation p.R177Q 0.27 deleterious(0.01) benign(0.021) TCGA-CG-4442-01 3 50316562 50316562 C T LSMEM2 Silent p.P6P 0.37 TCGA-CG-4442-01 3 50336748 50336748 A G NAT6 5'UTR 0.20 TCGA-CG-4442-01 3 50374740 50374740 G A RASSF1 Intron 0.34 TCGA-CG-4442-01 3 50683670 50683670 T C MAPKAPK3 Silent p.P268P 0.34 TCGA-CG-4442-01 3 51417604 51417604 C - DOCK3 Frame_Shift_Del p.P1852Qfs*45 0.43 TCGA-CG-4442-01 3 51430939 51430939 C T RBM15B Silent p.H703H 0.05 TCGA-CG-4442-01 3 51696633 51696633 G A RAD54L2 Missense_Mutation p.A1201T 0.32 tolerated_low_confidence(0.32) benign(0.084) TCGA-CG-4442-01 3 51751698 51751698 G A GRM2 Missense_Mutation p.V804M 0.33 deleterious(0) probably_damaging(1) TCGA-CG-4442-01 3 51970485 51970485 C T RRP9 Missense_Mutation p.V202I 0.34 tolerated(0.78) benign(0.078) TCGA-CG-4442-01 3 51980202 51980202 C T PARP3 Silent p.H380H 0.37 TCGA-CG-4442-01 3 51989789 51989789 C T GPR62 Missense_Mutation p.R41C 0.30 deleterious(0) probably_damaging(0.998) TCGA-CG-4442-01 3 52255388 52255388 G A TLR9 Missense_Mutation p.R1136W 0.40 deleterious(0) probably_damaging(0.972) TCGA-CG-4442-01 3 52453868 52453868 C A PHF7 Missense_Mutation p.P69H 0.44 tolerated(0.54) probably_damaging(0.974) TCGA-CG-4442-01 3 52786250 52786250 T C NEK4 Missense_Mutation p.T356A 0.32 tolerated(0.23) benign(0.005) TCGA-CG-4442-01 3 53806910 53806910 G A CACNA1D Silent p.A1385A 0.37 TCGA-CG-4442-01 3 55508419 55508419 G T WNT5A Silent p.S210S 0.39 TCGA-CG-4442-01 3 57276921 57276921 A - APPL1 Frame_Shift_Del p.R154Efs*6 0.32 TCGA-CG-4442-01 3 57619023 57619023 A - DENND6A Frame_Shift_Del p.L441Wfs*3 0.34 TCGA-CG-4442-01 3 58486884 58486884 C T KCTD6 Missense_Mutation p.P80L 0.37 deleterious(0) probably_damaging(0.997) TCGA-CG-4442-01 3 64184458 64184458 A G PRICKLE2 Splice_Site p.X48_splice 0.26 TCGA-CG-4442-01 3 66455662 66455662 T C LRIG1 Missense_Mutation p.T374A 0.23 tolerated(0.21) benign(0.028) TCGA-CG-4442-01 3 75472210 75472210 G A FAM86DP Intron 0.44 TCGA-CG-4442-01 3 77147335 77147335 C - ROBO2 Frame_Shift_Del p.R95Gfs*42 0.31 TCGA-CG-4442-01 3 8944121 8944121 T - RAD18 Frame_Shift_Del p.T371Qfs*2 0.33 TCGA-CG-4442-01 3 97852151 97852151 G A OR5H1 Missense_Mutation p.G204S 0.36 tolerated(0.06) possibly_damaging(0.678) TCGA-CG-4442-01 4 102951225 102951225 A G BANK1 Missense_Mutation p.E568G 0.42 tolerated(0.38) benign(0.016) TCGA-CG-4442-01 4 104640758 104640758 G A TACR3 Silent p.T25T 0.33 TCGA-CG-4442-01 4 106755632 106755632 T C GSTCD Silent p.A515A 0.34 TCGA-CG-4442-01 4 113539998 113539998 C A C4orf21 Missense_Mutation p.Q400H 0.36 tolerated(0.16) possibly_damaging(0.889) TCGA-CG-4442-01 4 114824636 114824636 A G ARSJ Silent p.G198G 0.04 TCGA-CG-4442-01 4 1165270 1165270 G A SPON2 Silent p.A75A 0.46 TCGA-CG-4442-01 4 118005517 118005517 T - TRAM1L1 Frame_Shift_Del p.R345Efs*14 0.35 TCGA-CG-4442-01 4 120427073 120427073 A G PDE5A Missense_Mutation p.F735S 0.27 deleterious(0) probably_damaging(1) TCGA-CG-4442-01 4 122075732 122075732 C T TNIP3 Missense_Mutation p.E233K 0.36 deleterious(0) probably_damaging(0.996) TCGA-CG-4442-01 4 122682762 122682762 G A TMEM155 Missense_Mutation p.A48V 0.33 deleterious(0.01) benign(0.032) TCGA-CG-4442-01 4 122853842 122853842 C T TRPC3 Missense_Mutation p.V191I 0.36 deleterious(0) probably_damaging(0.971) TCGA-CG-4442-01 4 123859335 123859335 G - SPATA5 Frame_Shift_Del p.A465Pfs*14 0.44 TCGA-CG-4442-01 4 126239277 126239277 A C FAT4 Missense_Mutation p.T571P 0.32 possibly_damaging(0.742) TCGA-CG-4442-01 4 126373095 126373095 G A FAT4 Missense_Mutation p.D3642N 0.28 probably_damaging(0.998) TCGA-CG-4442-01 4 129869675 129869675 T - SCLT1 Frame_Shift_Del p.A424Qfs*6 0.39 TCGA-CG-4442-01 4 134071206 134071206 T - PCDH10 5'UTR 0.44 TCGA-CG-4442-01 4 134072897 134072897 G A PCDH10 Silent p.E534E 0.30 TCGA-CG-4442-01 4 13605418 13605418 C T BOD1L1 Missense_Mutation p.D1036N 0.33 benign(0.012) TCGA-CG-4442-01 4 140641268 140641268 T C MAML3 Missense_Mutation p.T876A 0.23 benign(0.004) TCGA-CG-4442-01 4 141598226 141598231 CTCTCA - TBC1D9 In_Frame_Del p.S292_E293del 0.45 TCGA-CG-4442-01 4 144467118 144467118 A - SMARCA5 Frame_Shift_Del p.E815Kfs*17 0.32 TCGA-CG-4442-01 4 145627734 145627734 A - HHIP Frame_Shift_Del p.N296Mfs*41 0.36 TCGA-CG-4442-01 4 145916687 145916687 A G ANAPC10 Silent p.T132T 0.25 TCGA-CG-4442-01 4 146041093 146041093 T - ABCE1 Frame_Shift_Del p.L313Wfs*10 0.38 TCGA-CG-4442-01 4 146072045 146072045 C A OTUD4 Missense_Mutation p.K262N 0.42 deleterious(0) possibly_damaging(0.678) TCGA-CG-4442-01 4 148555054 148555054 A G TMEM184C Missense_Mutation p.R340G 0.04 tolerated(0.09) benign(0.008) TCGA-CG-4442-01 4 15055827 15055827 A G CPEB2 Missense_Mutation p.Y816C 0.37 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CG-4442-01 4 153897218 153897218 G T FHDC1 Silent p.R925R 0.33 TCGA-CG-4442-01 4 154625490 154625490 G A TLR2 Silent p.P477P 0.36 TCGA-CG-4442-01 4 155138 155138 T C ZNF718 RNA 0.29 TCGA-CG-4442-01 4 155720146 155720146 T - RBM46 Frame_Shift_Del p.F279Sfs*13 0.36 TCGA-CG-4442-01 4 158282733 158282733 G A GRIA2 Missense_Mutation p.V779I 0.37 tolerated(0.54) benign(0.002) TCGA-CG-4442-01 4 166218824 166218824 C T KLHL2 Nonsense_Mutation p.R244* 0.31 TCGA-CG-4442-01 4 166231869 166231869 T C KLHL2 Silent p.L406L 0.04 TCGA-CG-4442-01 4 17513588 17513588 A - QDPR Frame_Shift_Del p.R31Gfs*26 0.32 TCGA-CG-4442-01 4 177241279 177241279 G A SPCS3 Missense_Mutation p.V18M 0.38 deleterious(0) possibly_damaging(0.893) TCGA-CG-4442-01 4 183664526 183664526 C T TENM3 Missense_Mutation p.R1195W 0.33 deleterious(0) benign(0.257) TCGA-CG-4442-01 4 183696226 183696226 A G TENM3 Missense_Mutation p.N1742D 0.34 tolerated(0.18) possibly_damaging(0.636) TCGA-CG-4442-01 4 184614802 184614802 T C TRAPPC11 Silent p.T766T 0.34 TCGA-CG-4442-01 4 186423511 186423511 G A PDLIM3 Silent p.H344H 0.44 TCGA-CG-4442-01 4 187454877 187454877 G T MTNR1A Missense_Mutation p.T340N 0.39 tolerated(0.51) benign(0.003) TCGA-CG-4442-01 4 187530973 187530973 A G FAT1 Silent p.L3350L 0.26 TCGA-CG-4442-01 4 1993312 1993312 T G NELFA Missense_Mutation p.N125T 0.29 tolerated(0.18) benign(0.016) TCGA-CG-4442-01 4 20490474 20490474 G A SLIT2 Missense_Mutation p.C215Y 0.32 deleterious(0) possibly_damaging(0.851) TCGA-CG-4442-01 4 2083454 2083454 G A POLN Silent p.I738I 0.30 TCGA-CG-4442-01 4 2200403 2200403 T - POLN Frame_Shift_Del p.K252Nfs*34 0.38 TCGA-CG-4442-01 4 25270149 25270149 A G PI4K2B Missense_Mutation p.D388G 0.25 deleterious(0.01) probably_damaging(0.99) TCGA-CG-4442-01 4 27024487 27024487 G A STIM2 Missense_Mutation p.D712N 0.40 deleterious_low_confidence(0.04) benign(0.002) TCGA-CG-4442-01 4 2831297 2831297 C A SH3BP2 Silent p.R279R 0.40 TCGA-CG-4442-01 4 2986251 2986251 A - GRK4 Frame_Shift_Del p.S24Vfs*11 0.32 TCGA-CG-4442-01 4 3318198 3318198 C T RGS12 Missense_Mutation p.R101C 0.39 deleterious(0.03) benign(0.001) TCGA-CG-4442-01 4 3425305 3425305 G A RGS12 Silent p.T1057T 0.33 TCGA-CG-4442-01 4 3444812 3444812 T C HGFAC Missense_Mutation p.F112L 0.09 deleterious(0) possibly_damaging(0.737) TCGA-CG-4442-01 4 3494914 3494914 C A DOK7 Missense_Mutation p.L401M 0.29 deleterious(0.02) possibly_damaging(0.553) TCGA-CG-4442-01 4 3494970 3494970 C - DOK7 Frame_Shift_Del p.S422Hfs*34 0.32 TCGA-CG-4442-01 4 40108561 40108561 C T N4BP2 Missense_Mutation p.T472I 0.34 deleterious(0) probably_damaging(1) TCGA-CG-4442-01 4 40244932 40244932 G A RHOH 5'UTR 0.29 TCGA-CG-4442-01 4 41607973 41607973 G A LIMCH1 Silent p.T146T 0.24 TCGA-CG-4442-01 4 4239591 4239591 A G TMEM128 Missense_Mutation p.V133A 0.26 deleterious(0.03) benign(0.013) TCGA-CG-4442-01 4 44699434 44699434 C T GUF1 Silent p.A615A 0.29 TCGA-CG-4442-01 4 46736897 46736897 A C COX7B2 3'UTR 0.31 TCGA-CG-4442-01 4 48371975 48371975 A - SLAIN2 Frame_Shift_Del p.K168Nfs*27 0.37 TCGA-CG-4442-01 4 48496316 48496316 C T ZAR1 3'UTR 0.26 TCGA-CG-4442-01 4 48588687 48588687 A G FRYL Silent p.L567L 0.04 TCGA-CG-4442-01 4 48622719 48622719 C T FRYL Missense_Mutation p.R84H 0.38 deleterious(0.02) probably_damaging(0.971) TCGA-CG-4442-01 4 5021035 5021035 C A CYTL1 Missense_Mutation p.Q46H 0.30 tolerated(0.32) benign(0.052) TCGA-CG-4442-01 4 52883364 52883364 T C LRRC66 Missense_Mutation p.H139R 0.04 tolerated(0.21) benign(0.015) TCGA-CG-4442-01 4 52943136 52943136 C T SPATA18 Missense_Mutation p.A317V 0.37 deleterious(0.02) probably_damaging(0.972) TCGA-CG-4442-01 4 53322 53322 T C ZNF595 5'UTR 0.06 TCGA-CG-4442-01 4 54325484 54325484 C T FIP1L1 Silent p.R551R 0.34 TCGA-CG-4442-01 4 54326996 54326996 A G LNX1 3'UTR 0.41 TCGA-CG-4442-01 4 57897251 57897251 A - POLR2B 3'UTR 0.24 TCGA-CG-4442-01 4 57898593 57898593 T - IGFBP7 Frame_Shift_Del p.G277Vfs*13 0.29 TCGA-CG-4442-01 4 6621751 6621751 C T MAN2B2 Missense_Mutation p.T971M 0.28 deleterious(0.01) possibly_damaging(0.564) TCGA-CG-4442-01 4 68384936 68384936 T - CENPC Frame_Shift_Del p.R206Gfs*2 0.34 TCGA-CG-4442-01 4 68456664 68456664 A - STAP1 Frame_Shift_Del p.K242Nfs*3 0.36 TCGA-CG-4442-01 4 72338798 72338798 T - SLC4A4 Intron 0.23 TCGA-CG-4442-01 4 75246761 75246762 AA - EREG Frame_Shift_Del p.Q62Rfs*7 0.29 TCGA-CG-4442-01 4 76522205 76522205 A G CDKL2 Silent p.I412I 0.40 TCGA-CG-4442-01 4 77662420 77662420 G A SHROOM3 Missense_Mutation p.V1032M 0.45 tolerated(0.09) benign(0.006) TCGA-CG-4442-01 4 7985021 7985021 C T ABLIM2 Silent p.L598L 0.32 TCGA-CG-4442-01 4 80327749 80327750 - A GK2 Frame_Shift_Ins p.I536Yfs*4 0.30 TCGA-CG-4442-01 4 81124490 81124490 A G PRDM8 Missense_Mutation p.N625S 0.16 deleterious(0) probably_damaging(0.983) TCGA-CG-4442-01 4 81967644 81967644 A - BMP3 Frame_Shift_Del p.K358Rfs*20 0.43 TCGA-CG-4442-01 4 83348411 83348411 T G HNRNPDL Missense_Mutation p.Q318P 0.32 deleterious(0) benign(0.346) TCGA-CG-4442-01 4 83770124 83770124 T A SEC31A Missense_Mutation p.I779F 0.30 deleterious(0) possibly_damaging(0.824) TCGA-CG-4442-01 4 84015872 84015872 T C PLAC8 Missense_Mutation p.I106V 0.28 deleterious(0) possibly_damaging(0.557) TCGA-CG-4442-01 4 84383916 84383916 G T FAM175A Missense_Mutation p.N312K 0.06 tolerated(0.13) benign(0.009) TCGA-CG-4442-01 4 845556 845556 C - GAK Frame_Shift_Del p.V1164Sfs*41 0.36 TCGA-CG-4442-01 4 85708820 85708820 G T WDFY3 Missense_Mutation p.P1239Q 0.46 tolerated(0.38) probably_damaging(0.984) TCGA-CG-4442-01 4 88902839 88902839 C T SPP1 Silent p.T143T 0.33 TCGA-CG-4442-01 4 88979251 88979251 T - PKD2 Frame_Shift_Del p.L673* 0.36 TCGA-CG-4442-01 4 89052253 89052253 A G ABCG2 Missense_Mutation p.V164A 0.33 deleterious(0.03) benign(0.261) TCGA-CG-4442-01 4 89744370 89744370 T G FAM13A Intron 0.31 TCGA-CG-4442-01 4 90170454 90170454 G - GPRIN3 Frame_Shift_Del p.L270Sfs*32 0.41 TCGA-CG-4442-01 4 94316827 94316827 C T GRID2 Missense_Mutation p.R439C 0.32 deleterious(0) possibly_damaging(0.872) TCGA-CG-4442-01 4 951976 951976 G A TMEM175 Missense_Mutation p.E403K 0.24 tolerated(0.12) possibly_damaging(0.78) TCGA-CG-4442-01 4 952157 952157 G A TMEM175 Missense_Mutation p.R463H 0.26 deleterious(0) probably_damaging(0.939) TCGA-CG-4442-01 4 9783796 9783796 C T DRD5 Missense_Mutation p.T48I 0.21 tolerated(0.37) benign(0.164) TCGA-CG-4442-01 4 982996 982997 - C SLC26A1 Frame_Shift_Ins p.S578Lfs*7 0.35 TCGA-CG-4442-01 5 100191913 100191913 T C ST8SIA4 Missense_Mutation p.K231E 0.38 benign(0.077) TCGA-CG-4442-01 5 101834428 101834428 A G SLCO6A1 Missense_Mutation p.S41P 0.26 tolerated(0.27) benign(0.002) TCGA-CG-4442-01 5 102423850 102423850 C G GIN1 Missense_Mutation p.V441L 0.36 deleterious_low_confidence(0.02) benign(0.035) TCGA-CG-4442-01 5 102519007 102519007 A G PPIP5K2 Missense_Mutation p.T999A 0.34 tolerated_low_confidence(0.35) benign(0.004) TCGA-CG-4442-01 5 1074698 1074698 G - SLC12A7 Frame_Shift_Del p.H686Tfs*11 0.45 TCGA-CG-4442-01 5 108294945 108294945 G A FER Missense_Mutation p.G518D 0.25 deleterious(0.01) probably_damaging(1) TCGA-CG-4442-01 5 11159846 11159846 G A CTNND2 Silent p.C667C 0.33 TCGA-CG-4442-01 5 112178834 112178834 A G APC Missense_Mutation p.I2515V 0.28 benign(0.001) TCGA-CG-4442-01 5 121776153 121776156 TCAG - SNCAIP Intron 0.38 TCGA-CG-4442-01 5 127744418 127744418 A - FBN2 Frame_Shift_Del p.C343Vfs*8 0.31 TCGA-CG-4442-01 5 128977572 128977572 A G ADAMTS19 Silent p.L591L 0.30 TCGA-CG-4442-01 5 130897705 130897705 T C RAPGEF6 Missense_Mutation p.D106G 0.40 deleterious(0) benign(0.2) TCGA-CG-4442-01 5 132216839 132216839 A C AFF4 Missense_Mutation p.I1135S 0.36 deleterious(0.02) benign(0.163) TCGA-CG-4442-01 5 132424849 132424849 T C HSPA4 Missense_Mutation p.S414P 0.04 tolerated(0.27) benign(0.233) TCGA-CG-4442-01 5 133541549 133541549 A G PPP2CA Intron 0.18 TCGA-CG-4442-01 5 133914438 133914438 G A JADE2 Missense_Mutation p.A602T 0.49 tolerated(0.71) benign(0) TCGA-CG-4442-01 5 13845086 13845087 - T DNAH5 Frame_Shift_Ins p.R1711Tfs*37 0.38 TCGA-CG-4442-01 5 13876895 13876895 G T DNAH5 Silent p.P1098P 0.30 TCGA-CG-4442-01 5 140052333 140052333 C T DND1 Missense_Mutation p.A101T 0.33 deleterious(0.01) probably_damaging(0.951) TCGA-CG-4442-01 5 140167327 140167327 G A PCDHA1 Silent p.A484A 0.33 TCGA-CG-4442-01 5 140167916 140167916 C T PCDHA1 Missense_Mutation p.R681W 0.34 deleterious_low_confidence(0.02) benign(0.043) TCGA-CG-4442-01 5 140222665 140222665 G A PCDHA8 Missense_Mutation p.A587T 0.80 deleterious_low_confidence(0.03) benign(0.064) TCGA-CG-4442-01 5 140223022 140223022 G A PCDHA8 Missense_Mutation p.A706T 0.78 tolerated_low_confidence(0.08) benign(0.091) TCGA-CG-4442-01 5 140249146 140249146 C A PCDHA11 Missense_Mutation p.P153Q 0.39 deleterious_low_confidence(0.01) probably_damaging(0.992) TCGA-CG-4442-01 5 140256640 140256640 T C PCDHA12 Missense_Mutation p.L528P 0.21 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-CG-4442-01 5 140256803 140256803 G A PCDHA12 Silent p.P582P 0.35 TCGA-CG-4442-01 5 140531520 140531520 A G PCDHB6 Missense_Mutation p.Y561C 0.04 deleterious(0) probably_damaging(0.953) TCGA-CG-4442-01 5 140554460 140554460 A G PCDHB7 Missense_Mutation p.N682D 0.18 tolerated_low_confidence(1) benign(0) TCGA-CG-4442-01 5 140554465 140554465 G T PCDHB7 Silent p.S683S 0.19 TCGA-CG-4442-01 5 140554522 140554522 G A PCDHB7 Silent p.S702S 0.18 TCGA-CG-4442-01 5 140559519 140559519 A G PCDHB8 Missense_Mutation p.D635G 0.29 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-CG-4442-01 5 140581561 140581561 C T PCDHB11 Silent p.D738D 0.37 TCGA-CG-4442-01 5 140605248 140605248 G A PCDHB14 Missense_Mutation p.R724H 0.39 tolerated_low_confidence(0.12) benign(0.439) TCGA-CG-4442-01 5 140731680 140731680 G A PCDHGB1 Missense_Mutation p.R618H 0.33 tolerated(0.78) possibly_damaging(0.458) TCGA-CG-4442-01 5 140755541 140755541 G A PCDHGA6 Missense_Mutation p.A631T 0.49 tolerated_low_confidence(0.07) benign(0.166) TCGA-CG-4442-01 5 140788117 140788117 T C PCDHGB6 Silent p.I116I 0.34 TCGA-CG-4442-01 5 140857618 140857618 G A PCDHGC3 Silent p.T645T 0.38 TCGA-CG-4442-01 5 141019878 141019878 C T FCHSD1 3'UTR 0.44 TCGA-CG-4442-01 5 141331071 141331071 G T PCDH12 Missense_Mutation p.P989T 0.30 tolerated(0.66) benign(0.007) TCGA-CG-4442-01 5 141354463 141354463 T A RNF14 Nonsense_Mutation p.Y83* 0.04 TCGA-CG-4442-01 5 14378154 14378154 G T TRIO Missense_Mutation p.R1122M 0.20 probably_damaging(0.995) TCGA-CG-4442-01 5 14477004 14477004 T - TRIO Frame_Shift_Del p.L2031* 0.47 TCGA-CG-4442-01 5 14487781 14487781 C - TRIO Frame_Shift_Del p.V2351Cfs*62 0.33 TCGA-CG-4442-01 5 14498693 14498693 G A TRIO Missense_Mutation p.C2759Y 0.38 benign(0.126) TCGA-CG-4442-01 5 145719546 145719546 G A POU4F3 Missense_Mutation p.E186K 0.38 deleterious(0) probably_damaging(0.989) TCGA-CG-4442-01 5 145883505 145883506 GA - TCERG1 Frame_Shift_Del p.E892Afs*17 0.36 TCGA-CG-4442-01 5 146750335 146750335 T C STK32A Splice_Site p.X259_splice 0.41 TCGA-CG-4442-01 5 148687114 148687114 C T AFAP1L1 Missense_Mutation p.R229W 0.35 deleterious(0) probably_damaging(0.999) TCGA-CG-4442-01 5 149907475 149907475 A G NDST1 Missense_Mutation p.Y208C 0.41 tolerated(0.12) probably_damaging(0.951) TCGA-CG-4442-01 5 150029196 150029196 C A SYNPO Silent p.A697A 0.22 TCGA-CG-4442-01 5 150696535 150696535 T C SLC36A2 Missense_Mutation p.Y432C 0.35 deleterious(0.03) probably_damaging(0.981) TCGA-CG-4442-01 5 150886793 150886794 - G FAT2 Frame_Shift_Ins p.R4147Qfs*12 0.32 TCGA-CG-4442-01 5 150948143 150948143 A C FAT2 Missense_Mutation p.L117R 0.27 probably_damaging(0.999) TCGA-CG-4442-01 5 153674402 153674403 - T GALNT10 Frame_Shift_Ins p.D67Rfs*10 0.34 TCGA-CG-4442-01 5 161522498 161522498 C A GABRG2 Intron 0.29 TCGA-CG-4442-01 5 161522524 161522524 G A GABRG2 Missense_Mutation p.D95N 0.26 deleterious(0.01) probably_damaging(0.99) TCGA-CG-4442-01 5 162917426 162917426 A - HMMR Frame_Shift_Del p.K667Nfs*11 0.39 TCGA-CG-4442-01 5 162945415 162945415 T C MAT2B 3'UTR 0.31 TCGA-CG-4442-01 5 167957476 167957476 G A FBLL1 Missense_Mutation p.G323R 0.45 deleterious(0) probably_damaging(0.998) TCGA-CG-4442-01 5 169023668 169023668 A G SPDL1 Missense_Mutation p.H332R 0.04 tolerated(0.4) possibly_damaging(0.466) TCGA-CG-4442-01 5 169023669 169023669 T C SPDL1 Silent p.H332H 0.04 TCGA-CG-4442-01 5 169805607 169805607 A G KCNMB1 3'UTR 0.28 TCGA-CG-4442-01 5 172750372 172750372 C T STC2 Missense_Mutation p.G119D 0.39 tolerated(0.07) possibly_damaging(0.551) TCGA-CG-4442-01 5 175923649 175923649 C T FAF2 Missense_Mutation p.S275L 0.33 deleterious(0.04) benign(0.155) TCGA-CG-4442-01 5 176638979 176638979 T C NSD1 Silent p.S1193S 0.28 TCGA-CG-4442-01 5 176673750 176673750 A - NSD1 Frame_Shift_Del p.V1486* 0.36 TCGA-CG-4442-01 5 176827605 176827605 G A PFN3 5'UTR 0.47 TCGA-CG-4442-01 5 176885163 176885163 G - DBN1 Frame_Shift_Del p.Q560Rfs*23 0.41 TCGA-CG-4442-01 5 176919648 176919648 C T PDLIM7 Missense_Mutation p.G43R 0.33 tolerated(0.09) probably_damaging(0.999) TCGA-CG-4442-01 5 177576655 177576655 C A NHP2 3'UTR 0.33 TCGA-CG-4442-01 5 179321503 179321503 C T TBC1D9B Missense_Mutation p.E154K 0.16 deleterious(0) probably_damaging(1) TCGA-CG-4442-01 5 179994114 179994114 T - CNOT6 Frame_Shift_Del p.L251Wfs*2 0.35 TCGA-CG-4442-01 5 180057235 180057235 G A FLT4 Missense_Mutation p.T168M 0.34 deleterious(0) probably_damaging(0.994) TCGA-CG-4442-01 5 180338563 180338563 A G BTNL8 Missense_Mutation p.M208V 0.36 tolerated(0.17) benign(0) TCGA-CG-4442-01 5 23527575 23527575 G A PRDM9 Missense_Mutation p.S793N 0.28 tolerated(0.52) unknown(0) TCGA-CG-4442-01 5 31449427 31449427 C T DROSHA Missense_Mutation p.G928R 0.33 deleterious(0) probably_damaging(0.982) TCGA-CG-4442-01 5 31553019 31553019 A G C5orf22 3'UTR 0.26 TCGA-CG-4442-01 5 31983706 31983706 C T PDZD2 Missense_Mutation p.R308C 0.42 tolerated(0.26) benign(0.01) TCGA-CG-4442-01 5 32090776 32090776 G A PDZD2 Missense_Mutation p.G2408S 0.29 tolerated(1) benign(0.003) TCGA-CG-4442-01 5 34814751 34814751 T - RAI14 Frame_Shift_Del p.F310Lfs*20 0.32 TCGA-CG-4442-01 5 37162611 37162611 T - C5orf42 Frame_Shift_Del p.K2549Rfs*4 0.31 TCGA-CG-4442-01 5 41382376 41382376 T C PLCXD3 Missense_Mutation p.N122D 0.45 tolerated(0.52) benign(0.01) TCGA-CG-4442-01 5 43659315 43659315 G A NNT Missense_Mutation p.V833I 0.35 deleterious(0.03) probably_damaging(0.997) TCGA-CG-4442-01 5 475020 475020 C T SLC9A3 Missense_Mutation p.A827T 0.75 tolerated_low_confidence(0.6) benign(0.001) TCGA-CG-4442-01 5 50057724 50057724 G A PARP8 Missense_Mutation p.G139R 0.32 deleterious(0.02) probably_damaging(0.953) TCGA-CG-4442-01 5 5146476 5146476 C T ADAMTS16 Nonsense_Mutation p.Q137* 0.31 TCGA-CG-4442-01 5 54579187 54579187 A G DHX29 Silent p.T603T 0.27 TCGA-CG-4442-01 5 68491597 68491598 - A CENPH Frame_Shift_Ins p.L101Afs*13 0.33 TCGA-CG-4442-01 5 74643031 74643031 T C HMGCR Silent p.D151D 0.03 TCGA-CG-4442-01 5 76989061 76989061 T - TBCA Intron 0.38 TCGA-CG-4442-01 5 81613882 81613882 G A ATP6AP1L Silent p.S146S 0.35 TCGA-CG-4442-01 5 89783832 89783832 C T POLR3G Missense_Mutation p.P45S 0.33 deleterious(0.01) probably_damaging(0.973) TCGA-CG-4442-01 5 94030769 94030769 A - ANKRD32 Frame_Shift_Del p.I977Ffs*2 0.31 TCGA-CG-4442-01 5 94991908 94991908 A G RFESD Silent p.T176T 0.04 TCGA-CG-4442-01 5 95067839 95067839 T - RHOBTB3 Intron 0.31 TCGA-CG-4442-01 5 96253217 96253217 T C ERAP2 Missense_Mutation p.F931L 0.39 tolerated(0.06) benign(0.015) TCGA-CG-4442-01 5 96362455 96362455 T C LNPEP Missense_Mutation p.V953A 0.36 deleterious(0.02) possibly_damaging(0.507) TCGA-CG-4442-01 6 101296336 101296336 A - ASCC3 Frame_Shift_Del p.F163Lfs*5 0.36 TCGA-CG-4442-01 6 107391602 107391602 C - BEND3 Frame_Shift_Del p.D265Tfs*54 0.33 TCGA-CG-4442-01 6 108984970 108984970 C T FOXO3 Missense_Mutation p.R312C 0.37 deleterious(0) probably_damaging(0.99) TCGA-CG-4442-01 6 109771647 109771647 T C MICAL1 Silent p.L349L 0.06 TCGA-CG-4442-01 6 110300985 110300985 C T GPR6 Missense_Mutation p.R224C 0.38 deleterious(0) probably_damaging(0.926) TCGA-CG-4442-01 6 111210137 111210137 T C AMD1 Missense_Mutation p.V92A 0.30 tolerated(0.74) benign(0.172) TCGA-CG-4442-01 6 117710733 117710733 A G ROS1 Silent p.D513D 0.36 TCGA-CG-4442-01 6 117923425 117923425 T C GOPC Silent p.A9A 0.30 TCGA-CG-4442-01 6 121768887 121768887 C T GJA1 Silent p.C298C 0.35 TCGA-CG-4442-01 6 125541281 125541281 A G TPD52L1 Missense_Mutation p.D26G 0.32 tolerated(0.3) possibly_damaging(0.626) TCGA-CG-4442-01 6 129636721 129636721 C T LAMA2 Missense_Mutation p.A1219V 0.34 tolerated(0.19) benign(0.255) TCGA-CG-4442-01 6 131179333 131179333 C T EPB41L2 Silent p.S987S 0.04 TCGA-CG-4442-01 6 131481276 131481276 A - AKAP7 Frame_Shift_Del p.K79Rfs*21 0.37 TCGA-CG-4442-01 6 131919553 131919553 T G MED23 Silent p.A827A 0.43 TCGA-CG-4442-01 6 13230285 13230285 G A PHACTR1 Silent p.K417K 0.36 TCGA-CG-4442-01 6 13365589 13365589 G T GFOD1 Missense_Mutation p.L187I 0.33 tolerated(0.06) probably_damaging(0.913) TCGA-CG-4442-01 6 134210668 134210668 G A TCF21 Missense_Mutation p.E45K 0.30 tolerated(0.34) benign(0.054) TCGA-CG-4442-01 6 135516107 135516107 C T MYB Intron 0.33 TCGA-CG-4442-01 6 135518328 135518328 T C MYB Missense_Mutation p.V478A 0.34 tolerated(0.31) possibly_damaging(0.511) TCGA-CG-4442-01 6 135520107 135520107 C - MYB Frame_Shift_Del p.L545Sfs*6 0.37 TCGA-CG-4442-01 6 135784284 135784284 T - AHI1 Frame_Shift_Del p.T304Qfs*23 0.34 TCGA-CG-4442-01 6 13612197 13612197 A - SIRT5 3'UTR 0.38 TCGA-CG-4442-01 6 136582610 136589299 6:136582610-136589299 ATCATG BCLAF1 Splice_Site p.X799_splice 0.14 TCGA-CG-4442-01 6 139694831 139694831 G - CITED2 Frame_Shift_Del p.P84Rfs*63 0.31 TCGA-CG-4442-01 6 148865376 148865376 C - SASH1 Frame_Shift_Del p.P925Lfs*19 0.34 TCGA-CG-4442-01 6 149918302 149918302 G A KATNA1 Nonsense_Mutation p.R392* 0.35 TCGA-CG-4442-01 6 151153335 151153335 G A PLEKHG1 Missense_Mutation p.A1030T 0.44 deleterious(0) possibly_damaging(0.848) TCGA-CG-4442-01 6 15508639 15508639 C - JARID2 Frame_Shift_Del p.H934Tfs*51 0.26 TCGA-CG-4442-01 6 155498077 155498077 A G TIAM2 Missense_Mutation p.H830R 0.30 deleterious(0.02) benign(0.042) TCGA-CG-4442-01 6 159404767 159404767 T C RSPH3 Missense_Mutation p.D282G 0.30 deleterious(0) probably_damaging(0.999) TCGA-CG-4442-01 6 160461669 160461669 G A IGF2R Missense_Mutation p.A465T 0.35 deleterious(0) probably_damaging(1) TCGA-CG-4442-01 6 160557287 160557287 A - SLC22A1 Frame_Shift_Del p.R294Efs*6 0.33 TCGA-CG-4442-01 6 163987695 163987695 T - QKI Intron 0.76 TCGA-CG-4442-01 6 166571837 166571837 G A T Missense_Mutation p.A425V 0.28 deleterious(0.03) benign(0.066) TCGA-CG-4442-01 6 168271129 168271129 G A MLLT4 Missense_Mutation p.R122Q 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-CG-4442-01 6 17764503 17764503 A T KIF13A Missense_Mutation p.D1752E 0.06 tolerated_low_confidence(0.38) benign(0.001) TCGA-CG-4442-01 6 17764689 17764689 G A KIF13A Silent p.S1690S 0.32 TCGA-CG-4442-01 6 18122645 18122645 C T NHLRC1 Missense_Mutation p.A65T 0.56 tolerated(0.59) benign(0.006) TCGA-CG-4442-01 6 24357601 24357601 G - KAAG1 5'UTR 0.26 TCGA-CG-4442-01 6 24651211 24651211 A G TDP2 Silent p.D298D 0.06 TCGA-CG-4442-01 6 25279940 25279940 A - LRRC16A 5'UTR 0.40 TCGA-CG-4442-01 6 26022123 26022123 T C HIST1H4A Missense_Mutation p.Y73H 0.45 deleterious(0) probably_damaging(0.998) TCGA-CG-4442-01 6 26246947 26246947 C T HIST1H4G Missense_Mutation p.V87M 0.42 deleterious(0.03) possibly_damaging(0.529) TCGA-CG-4442-01 6 26598259 26598259 G A ABT1 Missense_Mutation p.R120H 0.39 tolerated(0.23) probably_damaging(0.978) TCGA-CG-4442-01 6 27107159 27107159 C T HIST1H4I Silent p.R24R 0.41 TCGA-CG-4442-01 6 27114460 27114460 C T HIST1H2BK Missense_Mutation p.V40I 0.33 tolerated_low_confidence(1) benign(0.106) TCGA-CG-4442-01 6 27806403 27806403 T - HIST1H2BN 5'Flank 0.43 TCGA-CG-4442-01 6 28502011 28502011 A - GPX5 3'UTR 0.36 TCGA-CG-4442-01 6 28540949 28540949 C T SCAND3 Missense_Mutation p.C906Y 0.42 deleterious(0.01) probably_damaging(0.996) TCGA-CG-4442-01 6 29274633 29274633 C A OR14J1 Missense_Mutation p.P56H 0.35 deleterious(0) probably_damaging(1) TCGA-CG-4442-01 6 30153579 30153579 C - TRIM26 3'UTR 0.40 TCGA-CG-4442-01 6 30297302 30297302 C T TRIM39 Nonsense_Mutation p.R70* 0.32 TCGA-CG-4442-01 6 30459108 30459108 G T HLA-E Missense_Mutation p.V269L 0.31 deleterious_low_confidence(0.04) probably_damaging(0.96) TCGA-CG-4442-01 6 31105997 31105997 G T PSORS1C2 Missense_Mutation p.P48T 0.41 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-CG-4442-01 6 31323363 31323363 G - HLA-B Frame_Shift_Del p.P209Qfs*5 0.39 TCGA-CG-4442-01 6 31583859 31583859 T G AIF1 Intron 0.29 TCGA-CG-4442-01 6 31697045 31697045 T C DDAH2 5'UTR 0.35 TCGA-CG-4442-01 6 31765402 31765402 A - LSM2 3'UTR 0.38 TCGA-CG-4442-01 6 31838664 31838664 C T SLC44A4 Missense_Mutation p.A288T 0.32 tolerated(0.25) benign(0.195) TCGA-CG-4442-01 6 31838702 31838702 T C SLC44A4 Missense_Mutation p.Y275C 0.17 deleterious(0) possibly_damaging(0.664) TCGA-CG-4442-01 6 31916154 31916154 G A CFB Missense_Mutation p.A803T 0.37 tolerated(0.16) probably_damaging(0.977) TCGA-CG-4442-01 6 32015707 32015707 C A TNXB 5'Flank 0.38 TCGA-CG-4442-01 6 32095989 32095989 C - ATF6B 5'UTR 0.45 TCGA-CG-4442-01 6 32805788 32805788 G - TAP2 Frame_Shift_Del p.L75* 0.48 TCGA-CG-4442-01 6 32974464 32974464 A - HLA-DOA 3'UTR 0.32 TCGA-CG-4442-01 6 33170162 33170162 G A SLC39A7 Missense_Mutation p.A253T 0.32 tolerated(0.52) benign(0.022) TCGA-CG-4442-01 6 36465582 36465583 - A STK38 Frame_Shift_Ins p.E383* 0.29 TCGA-CG-4442-01 6 36710137 36710137 G A CPNE5 Missense_Mutation p.R564C 0.39 deleterious(0) possibly_damaging(0.724) TCGA-CG-4442-01 6 37358679 37358679 A G RNF8 3'UTR 0.44 TCGA-CG-4442-01 6 38885823 38885824 - A DNAH8 Frame_Shift_Ins p.V3263Sfs*23 0.42 TCGA-CG-4442-01 6 39159204 39159204 G A KCNK5 Missense_Mutation p.T321M 0.33 tolerated(0.11) benign(0.009) TCGA-CG-4442-01 6 41704583 41704583 A G PGC 3'UTR 0.28 TCGA-CG-4442-01 6 42236421 42236421 G A TRERF1 Missense_Mutation p.P303L 0.31 tolerated_low_confidence(0.36) possibly_damaging(0.726) TCGA-CG-4442-01 6 42237177 42237177 G A TRERF1 Missense_Mutation p.S51L 0.35 deleterious_low_confidence(0) possibly_damaging(0.89) TCGA-CG-4442-01 6 43034086 43034086 A G KLC4 Missense_Mutation p.Y223C 0.09 deleterious(0.01) possibly_damaging(0.713) TCGA-CG-4442-01 6 43325431 43325431 G A ZNF318 Silent p.S207S 0.38 TCGA-CG-4442-01 6 47682692 47682692 G A GPR115 Missense_Mutation p.A571T 0.37 deleterious(0.04) benign(0.21) TCGA-CG-4442-01 6 47846151 47846151 A - PTCHD4 Frame_Shift_Del p.F810Sfs*25 0.35 TCGA-CG-4442-01 6 52367933 52367933 C A TRAM2 3'UTR 0.35 TCGA-CG-4442-01 6 55620351 55620351 G A BMP5 Missense_Mutation p.R449C 0.38 deleterious(0) probably_damaging(0.977) TCGA-CG-4442-01 6 56351910 56351910 A C DST Silent p.S4390S 0.23 TCGA-CG-4442-01 6 56358915 56358915 G A DST Nonsense_Mutation p.Q4140* 0.36 TCGA-CG-4442-01 6 56362821 56362821 A T DST Missense_Mutation p.S4020T 0.31 possibly_damaging(0.889) TCGA-CG-4442-01 6 56382365 56382365 T - DST Frame_Shift_Del p.K3438Nfs*2 0.50 TCGA-CG-4442-01 6 56476324 56476324 A - DST Frame_Shift_Del p.L1173Wfs*8 0.31 TCGA-CG-4442-01 6 57012429 57012429 C T ZNF451 Missense_Mutation p.H516Y 0.38 deleterious(0) probably_damaging(0.993) TCGA-CG-4442-01 6 57190736 57190736 C T PRIM2 Missense_Mutation p.R118C 0.36 deleterious(0) probably_damaging(1) TCGA-CG-4442-01 6 62604724 62604724 G A KHDRBS2 Missense_Mutation p.A209V 0.27 tolerated(0.36) benign(0.003) TCGA-CG-4442-01 6 71233735 71233735 C A FAM135A Missense_Mutation p.P390H 0.26 deleterious(0) probably_damaging(0.999) TCGA-CG-4442-01 6 71603902 71603902 A G B3GAT2 Missense_Mutation p.V222A 0.05 deleterious(0) probably_damaging(0.995) TCGA-CG-4442-01 6 7226755 7226755 G A RREB1 Missense_Mutation p.A255T 0.12 deleterious(0.03) probably_damaging(0.996) TCGA-CG-4442-01 6 74073542 74073542 C A KHDC3L Silent p.R205R 0.38 TCGA-CG-4442-01 6 75799923 75799923 T C COL12A1 Silent p.G2948G 0.35 TCGA-CG-4442-01 6 75833999 75833999 G T COL12A1 Silent p.S2232S 0.34 TCGA-CG-4442-01 6 7880637 7880638 AA - BMP6 3'UTR 0.33 TCGA-CG-4442-01 6 79675723 79675723 C T PHIP Missense_Mutation p.E1086K 0.37 tolerated(0.31) benign(0.137) TCGA-CG-4442-01 6 80751910 80751910 A - TTK Frame_Shift_Del p.K857Nfs*36 0.34 TCGA-CG-4442-01 6 82883120 82883120 T C IBTK Missense_Mutation p.N1254S 0.29 tolerated(0.51) benign(0) TCGA-CG-4442-01 6 82891683 82891683 T - IBTK Frame_Shift_Del p.K1213Sfs*50 0.38 TCGA-CG-4442-01 6 83847804 83847804 A G DOPEY1 Missense_Mutation p.D1348G 0.36 deleterious(0.05) probably_damaging(0.997) TCGA-CG-4442-01 6 85446535 85446535 C A TBX18 Silent p.T564T 0.37 TCGA-CG-4442-01 6 87964552 87964552 C T ZNF292 Missense_Mutation p.A402V 0.33 deleterious(0) probably_damaging(0.991) TCGA-CG-4442-01 6 88315636 88315636 T C ORC3 Silent p.G108G 0.27 TCGA-CG-4442-01 6 90312801 90312801 C T ANKRD6 Silent p.I91I 0.48 TCGA-CG-4442-01 6 90380703 90380703 T C MDN1 Missense_Mutation p.T4631A 0.28 benign(0.018) TCGA-CG-4442-01 6 90659999 90659999 C A BACH2 Missense_Mutation p.R609M 0.25 deleterious(0) possibly_damaging(0.885) TCGA-CG-4442-01 6 90660239 90660239 G A BACH2 Missense_Mutation p.A529V 0.28 deleterious(0.04) probably_damaging(0.988) TCGA-CG-4442-01 6 99849046 99849046 T A PNISR Missense_Mutation p.R596S 0.24 tolerated_low_confidence(0.38) benign(0.005) TCGA-CG-4442-01 7 100212899 100212899 C A MOSPD3 3'UTR 0.43 TCGA-CG-4442-01 7 100681299 100681299 C G MUC17 Missense_Mutation p.S2201C 0.39 unknown(0) TCGA-CG-4442-01 7 100802405 100802406 GG - AP1S1 Frame_Shift_Del p.D122Cfs*17 0.38 TCGA-CG-4442-01 7 102940681 102940681 T G PMPCB Silent p.A128A 0.34 TCGA-CG-4442-01 7 103030877 103030877 T C SLC26A5 Missense_Mutation p.Q437R 0.37 deleterious(0.05) probably_damaging(0.994) TCGA-CG-4442-01 7 103050937 103050937 G A SLC26A5 Silent p.V210V 0.30 TCGA-CG-4442-01 7 104753406 104753406 T C KMT2E Missense_Mutation p.S1735P 0.36 tolerated_low_confidence(0.21) benign(0.307) TCGA-CG-4442-01 7 104753622 104753622 A G KMT2E Missense_Mutation p.T1807A 0.04 deleterious_low_confidence(0.02) benign(0.152) TCGA-CG-4442-01 7 107638926 107638926 T - LAMB1 Frame_Shift_Del p.K75Nfs*15 0.31 TCGA-CG-4442-01 7 108155211 108155211 T C PNPLA8 Missense_Mutation p.E242G 0.07 deleterious(0.03) benign(0.006) TCGA-CG-4442-01 7 11022426 11022426 A - PHF14 Frame_Shift_Del p.K182Nfs*19 0.45 TCGA-CG-4442-01 7 117867989 117867989 T C ANKRD7 Intron 0.43 TCGA-CG-4442-01 7 119914673 119914673 C T KCND2 5'UTR 0.38 TCGA-CG-4442-01 7 120971879 120971879 G - WNT16 Frame_Shift_Del p.G167Afs*17 0.39 TCGA-CG-4442-01 7 122809232 122809232 C T SLC13A1 Missense_Mutation p.G175R 0.30 deleterious(0.01) probably_damaging(0.91) TCGA-CG-4442-01 7 127255747 127255747 T A PAX4 5'UTR 0.67 TCGA-CG-4442-01 7 127447559 127447559 C T SND1 Missense_Mutation p.P392S 0.34 deleterious(0.01) probably_damaging(0.996) TCGA-CG-4442-01 7 128452101 128452101 G A CCDC136 Missense_Mutation p.R759H 0.31 tolerated_low_confidence(1) benign(0.001) TCGA-CG-4442-01 7 128470849 128470849 T C FLNC Missense_Mutation p.V53A 0.29 tolerated(0.11) benign(0.349) TCGA-CG-4442-01 7 130027895 130027895 T C CPA1 3'UTR 0.38 TCGA-CG-4442-01 7 131831339 131831339 T C PLXNA4 Missense_Mutation p.D1662G 0.29 tolerated(0.07) possibly_damaging(0.897) TCGA-CG-4442-01 7 135287555 135287555 A - NUP205 Frame_Shift_Del p.K840Nfs*28 0.37 TCGA-CG-4442-01 7 135292023 135292023 T C NUP205 Silent p.L1033L 0.23 TCGA-CG-4442-01 7 136700105 136700105 A T CHRM2 Missense_Mutation p.I165F 0.29 tolerated(0.77) probably_damaging(0.962) TCGA-CG-4442-01 7 138312947 138312947 G A SVOPL Missense_Mutation p.S342F 0.45 deleterious(0) possibly_damaging(0.906) TCGA-CG-4442-01 7 139229127 139229127 T C CLEC2L 3'UTR 0.35 TCGA-CG-4442-01 7 139833448 139833448 T - KDM7A Frame_Shift_Del p.R97Gfs*41 0.30 TCGA-CG-4442-01 7 141365032 141365032 C T KIAA1147 Missense_Mutation p.V303M 0.37 deleterious(0) probably_damaging(0.993) TCGA-CG-4442-01 7 141408668 141408668 C T WEE2 Missense_Mutation p.S37L 0.35 tolerated(0.82) benign(0) TCGA-CG-4442-01 7 142008730 142008730 A G TRBV3-1 Missense_Mutation p.Y68C 0.26 deleterious(0) probably_damaging(0.997) TCGA-CG-4442-01 7 142651031 142651031 C T KEL Missense_Mutation p.A313T 0.28 deleterious(0.03) benign(0.323) TCGA-CG-4442-01 7 143632813 143632813 C G OR2F2 Missense_Mutation p.T163S 0.38 deleterious(0) possibly_damaging(0.474) TCGA-CG-4442-01 7 143956190 143956190 A - OR2A7 Frame_Shift_Del p.C178Vfs*37 0.22 TCGA-CG-4442-01 7 144096174 144096175 - G NOBOX Frame_Shift_Ins p.P447Tfs*30 0.28 TCGA-CG-4442-01 7 148464776 148464776 T G CUL1 Missense_Mutation p.L340V 0.33 deleterious(0.01) possibly_damaging(0.461) TCGA-CG-4442-01 7 148800665 148800665 C A ZNF425 3'UTR 0.37 TCGA-CG-4442-01 7 148963504 148963504 T C ZNF783 Missense_Mutation p.Y35H 0.10 tolerated(0.46) probably_damaging(0.924) TCGA-CG-4442-01 7 149545311 149545311 C - ZNF862 Frame_Shift_Del p.P245Qfs*21 0.28 TCGA-CG-4442-01 7 150554663 150554663 A G AOC1 Missense_Mutation p.T369A 0.40 tolerated(0.07) benign(0.159) TCGA-CG-4442-01 7 150698397 150698398 - G NOS3 Frame_Shift_Ins p.C441Lfs*57 0.27 TCGA-CG-4442-01 7 150747861 150747861 C T ASIC3 Missense_Mutation p.P277L 0.34 deleterious(0) possibly_damaging(0.667) TCGA-CG-4442-01 7 151891595 151891595 A G KMT2C Silent p.S1479S 0.38 TCGA-CG-4442-01 7 151945528 151945530 TGC - KMT2C In_Frame_Del p.Q664del 0.43 TCGA-CG-4442-01 7 154863162 154863162 T C HTR5A Missense_Mutation p.Y185H 0.39 tolerated(0.18) possibly_damaging(0.838) TCGA-CG-4442-01 7 156745292 156745292 G T NOM1 Missense_Mutation p.R371M 0.28 deleterious(0) probably_damaging(0.992) TCGA-CG-4442-01 7 158711457 158711457 T C WDR60 Silent p.D606D 0.30 TCGA-CG-4442-01 7 18767320 18767320 G A HDAC9 Missense_Mutation p.A617T 0.43 deleterious(0.05) benign(0.009) TCGA-CG-4442-01 7 19765163 19765163 G C TMEM196 Missense_Mutation p.H145D 0.38 deleterious(0.03) unknown(0) TCGA-CG-4442-01 7 20449395 20449395 A - ITGB8 Frame_Shift_Del p.K729Rfs*4 0.33 TCGA-CG-4442-01 7 2108876 2108876 C T MAD1L1 Missense_Mutation p.E391K 0.31 deleterious(0.03) benign(0.108) TCGA-CG-4442-01 7 2279284 2279284 G A FTSJ2 Missense_Mutation p.R23C 0.37 tolerated(0.28) benign(0.001) TCGA-CG-4442-01 7 2297420 2297420 C T SNX8 Missense_Mutation p.D312N 0.37 tolerated(0.11) probably_damaging(0.932) TCGA-CG-4442-01 7 2583343 2583343 G A BRAT1 Silent p.C228C 0.32 TCGA-CG-4442-01 7 26217597 26217597 T C NFE2L3 Missense_Mutation p.V202A 0.04 tolerated(0.15) benign(0.002) TCGA-CG-4442-01 7 27140390 27140390 A - HOXA2 Frame_Shift_Del p.F362Lfs*13 0.39 TCGA-CG-4442-01 7 27150193 27150193 C T HOXA3 Missense_Mutation p.G23R 0.43 deleterious(0) possibly_damaging(0.627) TCGA-CG-4442-01 7 29035335 29035335 C T CPVL 3'UTR 0.31 TCGA-CG-4442-01 7 29111459 29111459 T - CPVL Frame_Shift_Del p.K265Sfs*11 0.37 TCGA-CG-4442-01 7 2974156 2974156 T C CARD11 Silent p.S483S 0.25 TCGA-CG-4442-01 7 2984023 2984023 C T CARD11 Silent p.T169T 0.40 TCGA-CG-4442-01 7 35009088 35009088 A G DPY19L1 Missense_Mutation p.F251S 0.35 tolerated(0.06) probably_damaging(0.945) TCGA-CG-4442-01 7 39472696 39472696 G A POU6F2 Silent p.L349L 0.34 TCGA-CG-4442-01 7 40900065 40900065 A C SUGCT Missense_Mutation p.H468P 0.29 deleterious_low_confidence(0.04) benign(0.009) TCGA-CG-4442-01 7 42005281 42005281 G A GLI3 Silent p.D1130D 0.38 TCGA-CG-4442-01 7 42958976 42958976 A G PSMA2 Intron 0.04 TCGA-CG-4442-01 7 44579719 44579719 C T NPC1L1 Missense_Mutation p.A93T 0.29 tolerated(0.63) benign(0.001) TCGA-CG-4442-01 7 44747227 44747228 - C OGDH Frame_Shift_Ins p.N950Qfs*3 0.39 TCGA-CG-4442-01 7 45148709 45148709 G A TBRG4 Missense_Mutation p.A43V 0.32 tolerated(0.17) benign(0.014) TCGA-CG-4442-01 7 45223094 45223094 A G RAMP3 3'UTR 0.39 TCGA-CG-4442-01 7 47851503 47851503 G A PKD1L1 Missense_Mutation p.T2498M 0.33 tolerated(0.06) probably_damaging(0.958) TCGA-CG-4442-01 7 47942044 47942044 G A PKD1L1 Nonsense_Mutation p.Q666* 0.28 TCGA-CG-4442-01 7 49977098 49977098 A T ZPBP 3'UTR 0.32 TCGA-CG-4442-01 7 5662491 5662491 T C RNF216 Nonstop_Mutation p.*924Wext*15 0.31 TCGA-CG-4442-01 7 63538708 63538708 A G ZNF727 Silent p.E427E 0.27 TCGA-CG-4442-01 7 63727263 63727263 C T ZNF679 3'UTR 0.45 TCGA-CG-4442-01 7 64167799 64167799 G A ZNF107 Missense_Mutation p.E373K 0.30 tolerated(1) benign(0.004) TCGA-CG-4442-01 7 64168521 64168521 T C ZNF107 Silent p.C613C 0.34 TCGA-CG-4442-01 7 6634210 6634210 G A C7orf26 Missense_Mutation p.A187T 0.35 tolerated(0.35) benign(0.015) TCGA-CG-4442-01 7 6785809 6785809 C T PMS2CL RNA 0.21 TCGA-CG-4442-01 7 720281 720281 G - PRKAR1B Frame_Shift_Del p.P87Rfs*5 0.33 TCGA-CG-4442-01 7 72397426 72397427 - C POM121 Frame_Shift_Ins p.K52Qfs*18 0.37 TCGA-CG-4442-01 7 72892140 72892140 G A BAZ1B Missense_Mutation p.R551W 0.27 deleterious(0) probably_damaging(0.999) TCGA-CG-4442-01 7 73038576 73038576 C T MLXIPL Missense_Mutation p.D83N 0.26 deleterious(0) probably_damaging(0.996) TCGA-CG-4442-01 7 808793 808793 C T HEATR2 Intron 0.27 TCGA-CG-4442-01 7 82582694 82582694 T - PCLO Frame_Shift_Del p.K2525Nfs*14 0.33 TCGA-CG-4442-01 7 82585204 82585204 T - PCLO Frame_Shift_Del p.T1689Qfs*16 0.40 TCGA-CG-4442-01 7 83277761 83277761 A G SEMA3E Missense_Mutation p.L33S 0.39 deleterious(0) possibly_damaging(0.76) TCGA-CG-4442-01 7 87183250 87183250 T C ABCB1 Splice_Site p.X276_splice 0.05 TCGA-CG-4442-01 7 89936277 89936277 T C C7orf63 Silent p.T776T 0.32 TCGA-CG-4442-01 7 90747392 90747392 T G CDK14 Missense_Mutation p.F418C 0.33 deleterious(0) probably_damaging(0.987) TCGA-CG-4442-01 7 91645473 91645473 A G AKAP9 Missense_Mutation p.T1215A 0.33 benign(0.001) TCGA-CG-4442-01 7 92734173 92734173 T C SAMD9 Missense_Mutation p.Y413C 0.18 deleterious(0) probably_damaging(0.999) TCGA-CG-4442-01 7 94750077 94750077 G A PPP1R9A Missense_Mutation p.G528R 0.36 deleterious(0) probably_damaging(0.993) TCGA-CG-4442-01 7 95726809 95726809 C T DYNC1I1 Silent p.H614H 0.39 TCGA-CG-4442-01 7 97493592 97493592 C T ASNS Missense_Mutation p.A156T 0.28 deleterious(0.02) possibly_damaging(0.872) TCGA-CG-4442-01 7 97920706 97920706 G A BRI3 3'UTR 0.36 TCGA-CG-4442-01 7 98533290 98533290 C T TRRAP Missense_Mutation p.A1368V 0.29 possibly_damaging(0.636) TCGA-CG-4442-01 7 98608823 98608823 C T TRRAP Missense_Mutation p.A3682V 0.37 benign(0.362) TCGA-CG-4442-01 7 99701731 99701731 T - AP4M1 Frame_Shift_Del p.L189Wfs*10 0.42 TCGA-CG-4442-01 8 100108587 100108587 T C VPS13B Silent p.A113A 0.30 TCGA-CG-4442-01 8 100133550 100133550 T C VPS13B Silent p.D361D 0.30 TCGA-CG-4442-01 8 101076179 101076181 CTT - RGS22 In_Frame_Del p.E272del 0.22 TCGA-CG-4442-01 8 103289349 103289350 TT - UBR5 Frame_Shift_Del p.K2120Rfs*13 0.32 TCGA-CG-4442-01 8 103292631 103292631 T C UBR5 Missense_Mutation p.T1998A 0.27 tolerated(0.63) possibly_damaging(0.759) TCGA-CG-4442-01 8 104898446 104898446 A - RIMS2 Frame_Shift_Del p.G542Efs*26 0.31 TCGA-CG-4442-01 8 110656869 110656869 C T SYBU Missense_Mutation p.S7N 0.38 tolerated(0.16) benign(0.002) TCGA-CG-4442-01 8 11705324 11705324 T C CTSB Silent p.R180R 0.17 TCGA-CG-4442-01 8 120795639 120795639 A G TAF2 Silent p.A698A 0.17 TCGA-CG-4442-01 8 120818521 120818521 A G TAF2 Splice_Site p.X140_splice 0.26 TCGA-CG-4442-01 8 121554212 121554212 A G SNTB1 Silent p.R454R 0.19 TCGA-CG-4442-01 8 122641434 122641434 A G HAS2 Silent p.Y49Y 0.22 TCGA-CG-4442-01 8 12291578 12291578 G A FAM86B2 Missense_Mutation p.R48W 0.15 tolerated(0.06) benign(0.011) TCGA-CG-4442-01 8 123964129 123964129 G A ZHX2 Missense_Mutation p.D127N 0.24 tolerated(0.07) benign(0.038) TCGA-CG-4442-01 8 124204041 124204041 A G FAM83A Splice_Site p.X161_splice 0.20 TCGA-CG-4442-01 8 124266020 124266020 A G ZHX1 Missense_Mutation p.Y723H 0.26 tolerated(0.07) possibly_damaging(0.885) TCGA-CG-4442-01 8 124340720 124340720 G A ATAD2 Missense_Mutation p.A1193V 0.23 tolerated(0.31) benign(0.001) TCGA-CG-4442-01 8 125131154 125131154 C T FER1L6 Nonsense_Mutation p.R1787* 0.14 TCGA-CG-4442-01 8 126011817 126011817 C T SQLE Nonsense_Mutation p.Q58* 0.25 TCGA-CG-4442-01 8 126021227 126021227 A G SQLE Silent p.P279P 0.11 TCGA-CG-4442-01 8 130861526 130861526 T C FAM49B Missense_Mutation p.H268R 0.23 deleterious(0) probably_damaging(0.984) TCGA-CG-4442-01 8 131124450 131124450 C T ASAP1 Missense_Mutation p.R764Q 0.28 deleterious(0.04) probably_damaging(0.968) TCGA-CG-4442-01 8 131172152 131172152 T C ASAP1 Missense_Mutation p.Y323C 0.25 deleterious(0.02) probably_damaging(0.984) TCGA-CG-4442-01 8 131226861 131226861 T C ASAP1 Missense_Mutation p.T116A 0.28 tolerated(0.16) possibly_damaging(0.899) TCGA-CG-4442-01 8 134477028 134477028 T C ST3GAL1 Missense_Mutation p.I226V 0.06 probably_damaging(0.998) TCGA-CG-4442-01 8 139890149 139890149 C T COL22A1 Missense_Mutation p.A168T 0.17 unknown(0) TCGA-CG-4442-01 8 142367548 142367548 C T GPR20 Missense_Mutation p.R159H 0.32 tolerated(0.17) benign(0.072) TCGA-CG-4442-01 8 143763436 143763436 C A PSCA Nonsense_Mutation p.C77* 0.30 TCGA-CG-4442-01 8 144620193 144620193 G T ZC3H3 Silent p.I448I 0.27 TCGA-CG-4442-01 8 144811260 144811260 A G FAM83H Missense_Mutation p.F205S 0.16 deleterious(0.03) probably_damaging(0.999) TCGA-CG-4442-01 8 144891811 144891811 G A SCRIB Silent p.P536P 0.28 TCGA-CG-4442-01 8 144993053 144993053 G A PLEC Missense_Mutation p.R3783C 0.21 probably_damaging(0.982) TCGA-CG-4442-01 8 144994803 144994803 G T PLEC Silent p.A3199A 0.25 TCGA-CG-4442-01 8 144999422 144999422 G A PLEC Nonsense_Mutation p.R1696* 0.35 TCGA-CG-4442-01 8 145066963 145066963 A G GRINA Missense_Mutation p.N357S 0.14 tolerated(0.16) possibly_damaging(0.831) TCGA-CG-4442-01 8 145107485 145107485 A G OPLAH Missense_Mutation p.V1057A 0.20 deleterious(0.02) probably_damaging(0.928) TCGA-CG-4442-01 8 145741231 145741231 C - RECQL4 Frame_Shift_Del p.G392Vfs*14 0.35 TCGA-CG-4442-01 8 145753329 145753329 C T C8orf82 Intron 0.31 TCGA-CG-4442-01 8 146076258 146076258 G A COMMD5 Missense_Mutation p.R156W 0.33 deleterious(0.03) benign(0.059) TCGA-CG-4442-01 8 163212 163212 C T RPL23AP53 RNA 0.17 TCGA-CG-4442-01 8 1649527 1649527 G A DLGAP2 Silent p.A961A 0.32 TCGA-CG-4442-01 8 17088124 17088124 G - CNOT7 3'UTR 0.30 TCGA-CG-4442-01 8 18729499 18729499 C T PSD3 Missense_Mutation p.R292H 0.24 tolerated_low_confidence(0.06) probably_damaging(0.935) TCGA-CG-4442-01 8 195403 195403 A C ZNF596 Missense_Mutation p.S186R 0.28 tolerated(0.41) benign(0.01) TCGA-CG-4442-01 8 1998982 1998982 A - MYOM2 Frame_Shift_Del p.K36Sfs*13 0.28 TCGA-CG-4442-01 8 20110461 20110461 C T LZTS1 Silent p.A327A 0.24 TCGA-CG-4442-01 8 20110845 20110845 G T LZTS1 Silent p.P199P 0.20 TCGA-CG-4442-01 8 2044108 2044108 G A MYOM2 Missense_Mutation p.G716E 0.24 deleterious(0) probably_damaging(0.984) TCGA-CG-4442-01 8 21835279 21835279 A G XPO7 Splice_Site p.X255_splice 0.21 TCGA-CG-4442-01 8 21846547 21846547 A G XPO7 Silent p.E607E 0.22 TCGA-CG-4442-01 8 21973915 21973915 G A HR Silent p.S1135S 0.17 TCGA-CG-4442-01 8 22021610 22021610 G A SFTPC Intron 0.32 TCGA-CG-4442-01 8 22438070 22438070 G T PDLIM2 Intron 0.23 TCGA-CG-4442-01 8 23058108 23058108 C A TNFRSF10A Nonsense_Mutation p.G237* 0.28 TCGA-CG-4442-01 8 23307456 23307456 T G ENTPD4 5'UTR 0.24 TCGA-CG-4442-01 8 24323272 24323272 A G ADAM7 Missense_Mutation p.T125A 0.15 tolerated(0.14) benign(0.269) TCGA-CG-4442-01 8 25154129 25154129 T C DOCK5 Missense_Mutation p.S191P 0.13 deleterious(0) probably_damaging(0.999) TCGA-CG-4442-01 8 25280721 25280721 A G GNRH1 Silent p.I42I 0.22 TCGA-CG-4442-01 8 25364904 25364904 A G CDCA2 Missense_Mutation p.I908V 0.19 tolerated(0.46) benign(0.097) TCGA-CG-4442-01 8 26149253 26149253 C - PPP2R2A 5'Flank 0.32 TCGA-CG-4442-01 8 26237450 26237450 C A BNIP3L 5'Flank 0.20 TCGA-CG-4442-01 8 27287640 27287640 A G PTK2B Silent p.A194A 0.28 TCGA-CG-4442-01 8 28206127 28206127 C T ZNF395 3'UTR 0.12 TCGA-CG-4442-01 8 28575031 28575031 G A EXTL3 Silent p.V485V 0.23 TCGA-CG-4442-01 8 28929788 28929788 C - KIF13B Frame_Shift_Del p.A1523Pfs*4 0.33 TCGA-CG-4442-01 8 30703516 30703516 T - TEX15 Frame_Shift_Del p.A1007Lfs*12 0.26 TCGA-CG-4442-01 8 32600231 32600231 A T NRG1 Missense_Mutation p.Y224F 0.30 tolerated(0.42) benign(0.035) TCGA-CG-4442-01 8 38205098 38205098 T C WHSC1L1 Missense_Mutation p.K198E 0.17 tolerated(0.06) benign(0.029) TCGA-CG-4442-01 8 41399668 41399668 C T GINS4 3'UTR 0.27 TCGA-CG-4442-01 8 42611529 42611529 T - CHRNA6 Frame_Shift_Del p.V272* 0.26 TCGA-CG-4442-01 8 42978122 42978122 T - POMK 3'UTR 0.26 TCGA-CG-4442-01 8 48740750 48740750 T C PRKDC Silent p.P2851P 0.25 TCGA-CG-4442-01 8 48761849 48761849 C T PRKDC Silent p.V2381V 0.22 TCGA-CG-4442-01 8 48888391 48888391 C T MCM4 Missense_Mutation p.R828W 0.17 deleterious(0) benign(0.377) TCGA-CG-4442-01 8 53126792 53126792 G A ST18 Missense_Mutation p.T9M 0.25 tolerated(0.07) benign(0.021) TCGA-CG-4442-01 8 53569170 53569170 T C RB1CC1 Silent p.E1073E 0.17 TCGA-CG-4442-01 8 57129070 57129070 A - CHCHD7 Frame_Shift_Del p.N71Tfs*10 0.25 TCGA-CG-4442-01 8 59059811 59059811 G A FAM110B Missense_Mutation p.G341D 0.23 deleterious(0) probably_damaging(0.99) TCGA-CG-4442-01 8 59548059 59548060 - A NSMAF Frame_Shift_Ins p.E97* 0.29 TCGA-CG-4442-01 8 59739434 59739434 T C TOX Missense_Mutation p.K318E 0.24 deleterious(0) probably_damaging(0.987) TCGA-CG-4442-01 8 61778454 61778454 G - CHD7 Frame_Shift_Del p.D2988Mfs*3 0.34 TCGA-CG-4442-01 8 65494211 65494211 C T BHLHE22 Silent p.L288L 0.20 TCGA-CG-4442-01 8 67049351 67049351 G A TRIM55 Missense_Mutation p.A177T 0.18 deleterious(0.03) possibly_damaging(0.701) TCGA-CG-4442-01 8 67405952 67405952 G T C8orf46 Missense_Mutation p.K23N 0.19 deleterious(0) probably_damaging(0.991) TCGA-CG-4442-01 8 67796162 67796162 C T MCMDC2 Missense_Mutation p.R336C 0.25 tolerated(0.1) benign(0.001) TCGA-CG-4442-01 8 67803170 67803170 A G MCMDC2 Missense_Mutation p.T382A 0.16 tolerated(0.07) possibly_damaging(0.888) TCGA-CG-4442-01 8 67922971 67922971 G A PPP1R42 Silent p.D177D 0.26 TCGA-CG-4442-01 8 72967924 72967924 G A TRPA1 Missense_Mutation p.A454V 0.27 deleterious(0) probably_damaging(0.998) TCGA-CG-4442-01 8 72981394 72981394 T C TRPA1 Missense_Mutation p.H103R 0.30 deleterious(0) probably_damaging(0.95) TCGA-CG-4442-01 8 73480396 73480397 - A KCNB2 Frame_Shift_Ins p.E146Rfs*23 0.26 TCGA-CG-4442-01 8 73849583 73849583 G T KCNB2 Missense_Mutation p.G665C 0.21 tolerated_low_confidence(0.05) benign(0.273) TCGA-CG-4442-01 8 77768496 77768496 C T ZFHX4 Silent p.N3113N 0.21 TCGA-CG-4442-01 8 77775799 77775799 G - ZFHX4 Frame_Shift_Del p.G3285Dfs*68 0.28 TCGA-CG-4442-01 8 77896243 77896243 C T PEX2 Missense_Mutation p.A58T 0.34 deleterious(0.03) possibly_damaging(0.852) TCGA-CG-4442-01 8 79717182 79717182 A G IL7 5'UTR 0.27 TCGA-CG-4442-01 8 86157915 86157915 C T CA13 5'UTR 0.23 TCGA-CG-4442-01 8 87393036 87393036 C T WWP1 Missense_Mutation p.T51M 0.29 deleterious(0) benign(0.431) TCGA-CG-4442-01 8 8749149 8749149 T C MFHAS1 Missense_Mutation p.I474V 0.26 tolerated(0.71) benign(0.001) TCGA-CG-4442-01 8 87591466 87591466 C G CNGB3 Missense_Mutation p.G599A 0.27 deleterious(0.01) benign(0.386) TCGA-CG-4442-01 8 90784971 90784971 A G RIPK2 Silent p.P256P 0.22 TCGA-CG-4442-01 8 94745548 94745548 A - RBM12B 3'UTR 0.42 TCGA-CG-4442-01 8 95142918 95142918 G T CDH17 Missense_Mutation p.H778Q 0.24 tolerated(0.55) benign(0.004) TCGA-CG-4442-01 8 95384421 95384421 T C RAD54B Missense_Mutation p.T904A 0.30 deleterious(0.01) possibly_damaging(0.881) TCGA-CG-4442-01 8 95680231 95680231 G A ESRP1 Missense_Mutation p.R329H 0.24 deleterious(0) probably_damaging(0.999) TCGA-CG-4442-01 8 95686611 95686611 A - ESRP1 Frame_Shift_Del p.N512Tfs*2 0.47 TCGA-CG-4442-01 8 95800209 95800209 G A DPY19L4 Missense_Mutation p.A646T 0.26 tolerated(0.12) benign(0.04) TCGA-CG-4442-01 8 99054391 99054391 G A RPL30 Intron 0.28 TCGA-CG-4442-01 8 99170251 99170251 C A POP1 Missense_Mutation p.L943M 0.23 deleterious(0.02) possibly_damaging(0.897) TCGA-CG-4442-01 8 99205152 99205153 - T NIPAL2 3'UTR 0.25 TCGA-CG-4442-01 8 99440298 99440298 C T KCNS2 Missense_Mutation p.R31C 0.29 tolerated(0.06) possibly_damaging(0.683) TCGA-CG-4442-01 9 100077196 100077196 G A CCDC180 Missense_Mutation p.E299K 0.36 deleterious(0) benign(0.446) TCGA-CG-4442-01 9 101806909 101806909 G - COL15A1 Frame_Shift_Del p.K881Rfs*36 0.30 TCGA-CG-4442-01 9 102626286 102626287 - T NR4A3 3'UTR 0.25 TCGA-CG-4442-01 9 107623828 107623828 T C ABCA1 Intron 0.31 TCGA-CG-4442-01 9 108097858 108097858 T A SLC44A1 Nonsense_Mutation p.L95* 0.28 TCGA-CG-4442-01 9 109690181 109690181 C T ZNF462 Missense_Mutation p.H1330Y 0.43 probably_damaging(0.995) TCGA-CG-4442-01 9 111956600 111956600 G A EPB41L4B Missense_Mutation p.A708V 0.41 deleterious_low_confidence(0.03) benign(0.022) TCGA-CG-4442-01 9 112705214 112705214 C T PALM2 Missense_Mutation p.H249Y 0.37 tolerated(0.17) benign(0.001) TCGA-CG-4442-01 9 114840897 114840897 C T SUSD1 Silent p.P558P 0.32 TCGA-CG-4442-01 9 115337189 115337189 T C KIAA1958 Missense_Mutation p.S277P 0.07 tolerated(0.35) benign(0) TCGA-CG-4442-01 9 115449705 115449705 A - INIP 3'UTR 0.21 TCGA-CG-4442-01 9 116053805 116053805 G A PRPF4 Silent p.T478T 0.38 TCGA-CG-4442-01 9 116136584 116136584 C T HDHD3 Silent p.T17T 0.32 TCGA-CG-4442-01 9 123714951 123714951 A - C5 3'UTR 0.31 TCGA-CG-4442-01 9 123776151 123776151 G A C5 Missense_Mutation p.H753Y 0.32 tolerated(0.27) benign(0.001) TCGA-CG-4442-01 9 124535261 124535261 C T DAB2IP Silent p.G790G 0.44 TCGA-CG-4442-01 9 124979348 124979348 G A LHX6 Silent p.N227N 0.29 TCGA-CG-4442-01 9 125681320 125681320 A G ZBTB26 Silent p.F298F 0.06 TCGA-CG-4442-01 9 125861041 125861042 - A RABGAP1 Frame_Shift_Ins p.N930Kfs*7 0.34 TCGA-CG-4442-01 9 126794732 126794732 C T LHX2 Missense_Mutation p.R323C 0.32 deleterious(0) probably_damaging(0.998) TCGA-CG-4442-01 9 130825856 130825856 G A NAIF1 Nonsense_Mutation p.Q279* 0.39 TCGA-CG-4442-01 9 130884681 130884681 C T PTGES2 Missense_Mutation p.R322Q 0.41 tolerated(0.06) benign(0.165) TCGA-CG-4442-01 9 130988357 130988357 A - DNM1 Intron 0.41 TCGA-CG-4442-01 9 131020067 131020067 A G GOLGA2 Splice_Site p.X844_splice 0.32 TCGA-CG-4442-01 9 13125277 13125277 T - MPDZ Frame_Shift_Del p.K1582Rfs*7 0.47 TCGA-CG-4442-01 9 132580879 132580879 C A TOR1A Missense_Mutation p.R223M 0.34 deleterious(0) possibly_damaging(0.759) TCGA-CG-4442-01 9 133911697 133911697 C A LAMC3 Silent p.A318A 0.42 TCGA-CG-4442-01 9 134165682 134165682 G A PPAPDC3 Missense_Mutation p.A100T 0.33 deleterious(0) benign(0.222) TCGA-CG-4442-01 9 134471743 134471743 G A RAPGEF1 Silent p.D709D 0.37 TCGA-CG-4442-01 9 135202213 135202213 G T SETX Missense_Mutation p.P1591H 0.26 deleterious(0.01) possibly_damaging(0.778) TCGA-CG-4442-01 9 135203957 135203957 G A SETX Missense_Mutation p.R1010C 0.33 tolerated(0.09) benign(0) TCGA-CG-4442-01 9 135277388 135277388 T - TTF1 Frame_Shift_Del p.K274Sfs*149 0.29 TCGA-CG-4442-01 9 135462862 135462862 G A BARHL1 Missense_Mutation p.V205M 0.21 deleterious(0) probably_damaging(1) TCGA-CG-4442-01 9 135946579 135946579 G - CEL Frame_Shift_Del p.D568Tfs*139 0.22 TCGA-CG-4442-01 9 136596526 136596526 G A SARDH Silent p.D197D 0.31 TCGA-CG-4442-01 9 137693828 137693829 - C COL5A1 Frame_Shift_Ins p.G997Rfs*17 0.27 TCGA-CG-4442-01 9 137717721 137717721 T A COL5A1 Missense_Mutation p.C1680S 0.37 unknown(0) TCGA-CG-4442-01 9 138377324 138377324 C - PPP1R26 Frame_Shift_Del p.C325Afs*27 0.10 TCGA-CG-4442-01 9 138378961 138378961 G - PPP1R26 Frame_Shift_Del p.G870Afs*84 0.37 TCGA-CG-4442-01 9 138387441 138387441 C T C9orf116 Silent p.S81S 0.37 TCGA-CG-4442-01 9 138440623 138440623 C T OBP2A Missense_Mutation p.S153L 0.33 tolerated(0.26) benign(0.028) TCGA-CG-4442-01 9 139288730 139288730 C T SNAPC4 Silent p.L201L 0.38 TCGA-CG-4442-01 9 139317760 139317760 C T PMPCA 3'UTR 0.46 TCGA-CG-4442-01 9 139395128 139395128 C T NOTCH1 Missense_Mutation p.R1937H 0.38 deleterious(0) probably_damaging(0.957) TCGA-CG-4442-01 9 139412608 139412608 G A NOTCH1 Silent p.D412D 0.26 TCGA-CG-4442-01 9 139749902 139749902 G A MAMDC4 Silent p.P434P 0.50 TCGA-CG-4442-01 9 140036496 140036496 C - GRIN1 Frame_Shift_Del p.N99Tfs*23 0.48 TCGA-CG-4442-01 9 140115502 140115502 G - RNF208 Frame_Shift_Del p.R55Gfs*64 0.60 TCGA-CG-4442-01 9 140327669 140327670 - G NOXA1 Frame_Shift_Ins p.P291Afs*7 0.39 TCGA-CG-4442-01 9 140331377 140331377 C T ENTPD8 Missense_Mutation p.A167T 0.29 deleterious(0) benign(0.047) TCGA-CG-4442-01 9 140331675 140331675 G T ENTPD8 Missense_Mutation p.P111T 0.25 deleterious(0) probably_damaging(1) TCGA-CG-4442-01 9 140481464 140481464 G A ZMYND19 Missense_Mutation p.P105L 0.43 deleterious(0) possibly_damaging(0.462) TCGA-CG-4442-01 9 2123850 2123850 A G SMARCA2 Silent p.E1298E 0.30 TCGA-CG-4442-01 9 21971106 21971106 G A CDKN2A Silent p.D84D 0.32 TCGA-CG-4442-01 9 26995768 26995768 A G LRRC19 Silent p.F288F 0.38 TCGA-CG-4442-01 9 33385412 33385412 A G AQP7 Intron 0.14 TCGA-CG-4442-01 9 33675400 33675400 G A PTENP1 RNA 0.13 TCGA-CG-4442-01 9 34297077 34297077 C T KIF24 Silent p.A283A 0.21 TCGA-CG-4442-01 9 34371197 34371197 G A KIAA1161 Missense_Mutation p.A548V 0.25 deleterious(0) probably_damaging(1) TCGA-CG-4442-01 9 34658640 34658640 G A IL11RA Missense_Mutation p.R257H 0.42 deleterious(0) possibly_damaging(0.468) TCGA-CG-4442-01 9 35380612 35380612 G A UNC13B Missense_Mutation p.E702K 0.34 deleterious(0) probably_damaging(0.994) TCGA-CG-4442-01 9 35381108 35381108 G T UNC13B Missense_Mutation p.D714Y 0.33 deleterious(0) probably_damaging(0.998) TCGA-CG-4442-01 9 35661184 35661184 A G CCDC107 Nonstop_Mutation p.*284Wext*21 0.06 TCGA-CG-4442-01 9 36199078 36199078 C T CLTA Missense_Mutation p.R120C 0.35 tolerated(0.07) benign(0.024) TCGA-CG-4442-01 9 36249330 36249330 C T GNE Missense_Mutation p.R39Q 0.34 deleterious(0.03) benign(0.114) TCGA-CG-4442-01 9 36589562 36589562 T C MELK Silent p.I58I 0.42 TCGA-CG-4442-01 9 37436814 37436814 C T GRHPR 3'UTR 0.43 TCGA-CG-4442-01 9 37441103 37441103 C T ZBTB5 Missense_Mutation p.M482I 0.35 tolerated_low_confidence(0.1) benign(0) TCGA-CG-4442-01 9 37441822 37441822 T C ZBTB5 Missense_Mutation p.N243D 0.41 tolerated_low_confidence(0.43) benign(0.006) TCGA-CG-4442-01 9 405015 405015 T - DOCK8 Frame_Shift_Del p.F1113Lfs*2 0.26 TCGA-CG-4442-01 9 5361173 5361173 T - PLGRKT Frame_Shift_Del p.K76Rfs*12 0.30 TCGA-CG-4442-01 9 6014994 6014994 G A RANBP6 Missense_Mutation p.A205V 0.38 tolerated(1) benign(0.007) TCGA-CG-4442-01 9 6645245 6645245 C T GLDC Silent p.A85A 0.28 TCGA-CG-4442-01 9 70993145 70993145 A G PGM5 Missense_Mutation p.I98V 0.13 deleterious(0.01) possibly_damaging(0.573) TCGA-CG-4442-01 9 711872 711872 A G KANK1 Missense_Mutation p.Q369R 0.20 tolerated(0.18) benign(0.147) TCGA-CG-4442-01 9 71395787 71395788 GT - FAM122A Frame_Shift_Del p.V239Ifs*6 0.31 TCGA-CG-4442-01 9 72056032 72056032 C A APBA1 Splice_Site p.X728_splice 0.39 TCGA-CG-4442-01 9 7799532 7799532 A G TMEM261 Missense_Mutation p.V68A 0.18 tolerated(0.62) benign(0.045) TCGA-CG-4442-01 9 79318675 79318675 G A PRUNE2 Silent p.S2618S 0.36 TCGA-CG-4442-01 9 80046287 80046287 G T GNA14 Silent p.P181P 0.37 TCGA-CG-4442-01 9 86924587 86924587 T G SLC28A3 Silent p.R67R 0.38 TCGA-CG-4442-01 9 90283523 90283523 G A DAPK1 Silent p.T645T 0.32 TCGA-CG-4442-01 9 90535683 90535683 T C SPATA31C1 RNA 0.31 TCGA-CG-4442-01 9 90589317 90589317 G A CDK20 Silent p.H15H 0.28 TCGA-CG-4442-01 9 91617003 91617003 C T S1PR3 Silent p.V296V 0.38 TCGA-CG-4442-01 9 91994223 91994223 T C SEMA4D Missense_Mutation p.Q662R 0.36 tolerated(0.78) benign(0.001) TCGA-CG-4442-01 9 95077286 95077286 G T NOL8 Missense_Mutation p.P541T 0.32 deleterious(0) probably_damaging(0.993) TCGA-CG-4442-01 9 95482718 95482718 G A BICD2 Missense_Mutation p.A309V 0.44 tolerated(0.41) benign(0.003) TCGA-CG-4442-01 9 95780428 95780428 T C FGD3 Missense_Mutation p.I429T 0.06 tolerated(1) benign(0.009) TCGA-CG-4442-01 9 97063668 97063668 T C ZNF169 3'UTR 0.15 TCGA-CG-4442-01 X 100653412 100653412 G A GLA Silent p.D315D 0.53 TCGA-CG-4442-01 X 103220136 103220136 T C TMSB15B Missense_Mutation p.V42A 0.04 tolerated(0.83) benign(0) TCGA-CG-4442-01 X 103495292 103495292 A G ESX1 Missense_Mutation p.S280P 0.41 tolerated(0.19) unknown(0) TCGA-CG-4442-01 X 103495293 103495293 G C ESX1 Silent p.G279G 0.42 TCGA-CG-4442-01 X 104999178 104999178 G T IL1RAPL2 Missense_Mutation p.K400N 0.69 deleterious(0) probably_damaging(0.999) TCGA-CG-4442-01 X 105905498 105905498 C T CXorf57 Silent p.S744S 0.71 TCGA-CG-4442-01 X 106960004 106960004 G A TSC22D3 Intron 0.74 TCGA-CG-4442-01 X 107319359 107319359 C T VSIG1 Silent p.A283A 0.69 TCGA-CG-4442-01 X 109416700 109416700 T C TMEM164 3'UTR 0.15 TCGA-CG-4442-01 X 109416701 109416701 T C TMEM164 3'UTR 0.16 TCGA-CG-4442-01 X 114141262 114141262 G A HTR2C Missense_Mutation p.V221I 0.71 tolerated(0.05) benign(0.317) TCGA-CG-4442-01 X 114249138 114249138 C T IL13RA2 Splice_Site p.X83_splice 0.06 TCGA-CG-4442-01 X 123179073 123179073 T - STAG2 Frame_Shift_Del p.C176Vfs*7 0.56 TCGA-CG-4442-01 X 134494750 134494750 A G ZNF449 Missense_Mutation p.R436G 0.04 tolerated(0.06) benign(0.28) TCGA-CG-4442-01 X 134495119 134495119 T - ZNF449 3'UTR 0.62 TCGA-CG-4442-01 X 135314193 135314194 - G MAP7D3 Frame_Shift_Ins p.Q308Pfs*25 0.65 TCGA-CG-4442-01 X 135764121 135764121 T - ARHGEF6 Frame_Shift_Del p.I496Yfs*3 0.54 TCGA-CG-4442-01 X 13651258 13651258 T - EGFL6 3'UTR 0.51 TCGA-CG-4442-01 X 136648848 136648848 C T ZIC3 5'UTR 0.72 TCGA-CG-4442-01 X 138644273 138644273 T C F9 3'UTR 0.69 TCGA-CG-4442-01 X 140336551 140336551 C T SPANXC Missense_Mutation p.V14I 0.67 deleterious(0.05) benign(0.071) TCGA-CG-4442-01 X 151092878 151092878 A G MAGEA4 Missense_Mutation p.T248A 0.71 deleterious(0) possibly_damaging(0.865) TCGA-CG-4442-01 X 152226568 152226568 C T PNMA3 Missense_Mutation p.R386W 0.65 tolerated(0.2) benign(0) TCGA-CG-4442-01 X 153175819 153175819 G A ARHGAP4 Silent p.Y694Y 0.62 TCGA-CG-4442-01 X 153583313 153583313 G T FLNA Missense_Mutation p.D1699E 0.61 tolerated(0.14) benign(0.025) TCGA-CG-4442-01 X 154020457 154020457 A G MPP1 Missense_Mutation p.V69A 0.07 deleterious(0.01) benign(0.234) TCGA-CG-4442-01 X 154091467 154091467 T - F8 Frame_Shift_Del p.K2155Nfs*31 0.52 TCGA-CG-4442-01 X 1561150 1561150 C T ASMTL Missense_Mutation p.A52T 0.54 deleterious(0.04) benign(0.064) TCGA-CG-4442-01 X 17819461 17819461 G - RAI2 Frame_Shift_Del p.L224Wfs*13 0.51 TCGA-CG-4442-01 X 19705767 19705767 G A SH3KBP1 Intron 0.69 TCGA-CG-4442-01 X 2343345 2343345 A G DHRSX Missense_Mutation p.V37A 0.06 tolerated(0.34) benign(0.001) TCGA-CG-4442-01 X 27999203 27999203 G A DCAF8L1 Silent p.S83S 0.07 TCGA-CG-4442-01 X 31222117 31222118 - C DMD Frame_Shift_Ins p.S3257Qfs*2 0.54 TCGA-CG-4442-01 X 3248316 3248316 G A MXRA5 Missense_Mutation p.T151M 0.74 tolerated(0.1) benign(0.146) TCGA-CG-4442-01 X 34150286 34150286 C T FAM47A Missense_Mutation p.R37H 0.68 tolerated(0.28) probably_damaging(0.967) TCGA-CG-4442-01 X 39931850 39931850 T C BCOR Missense_Mutation p.T917A 0.68 tolerated_low_confidence(0.71) benign(0.007) TCGA-CG-4442-01 X 47430395 47430395 G A ARAF Missense_Mutation p.R557Q 0.77 deleterious(0) probably_damaging(1) TCGA-CG-4442-01 X 48319469 48319469 G A SLC38A5 Silent p.P285P 0.50 TCGA-CG-4442-01 X 48417659 48417659 C T TBC1D25 Silent p.H210H 0.71 TCGA-CG-4442-01 X 53226001 53226001 T C KDM5C Missense_Mutation p.M950V 0.64 deleterious(0.03) benign(0.224) TCGA-CG-4442-01 X 53230892 53230892 C T KDM5C Missense_Mutation p.R634H 0.75 deleterious(0) probably_damaging(0.994) TCGA-CG-4442-01 X 53440338 53440338 A G SMC1A Silent p.A153A 0.62 TCGA-CG-4442-01 X 54359575 54359575 G C WNK3 Missense_Mutation p.L178V 0.73 deleterious(0) possibly_damaging(0.855) TCGA-CG-4442-01 X 55650330 55650330 G A FOXR2 Silent p.K62K 0.67 TCGA-CG-4442-01 X 69261725 69261725 C T AWAT2 Missense_Mutation p.R312H 0.69 tolerated(0.62) benign(0.012) TCGA-CG-4442-01 X 69502696 69502696 G - RAB41 Frame_Shift_Del p.D76Tfs*3 0.11 TCGA-CG-4442-01 X 70367594 70367594 C T NLGN3 5'UTR 0.73 TCGA-CG-4442-01 X 73066772 73066772 A G XIST RNA 0.64 TCGA-CG-4442-01 X 99662505 99662505 G - PCDH19 Frame_Shift_Del p.P364Rfs*4 0.59 TCGA-CG-4443-01 10 104816657 104816657 A C CNNM2 Missense_Mutation p.K670T 0.26 tolerated(0.36) benign(0.361) TCGA-CG-4443-01 10 132891575 132891575 C T TCERG1L Silent p.T537T 0.40 TCGA-CG-4443-01 10 42832348 42832348 G A RP11-313J2.1 RNA 0.36 TCGA-CG-4443-01 10 46111877 46111893 GGAAGAGTTAGATTTTT - ZFAND4 Missense_Mutation 0.30 TCGA-CG-4443-01 10 90522041 90522041 C T LIPN Nonsense_Mutation p.R69* 0.35 TCGA-CG-4443-01 11 55339896 55339896 A G OR4C16 Missense_Mutation p.Q98R 0.36 deleterious(0) benign(0.36) TCGA-CG-4443-01 11 57182110 57182110 G C SLC43A3 Nonsense_Mutation p.Y346* 0.11 TCGA-CG-4443-01 11 63137725 63137725 C T SLC22A9 Missense_Mutation p.A66V 0.44 tolerated(0.21) benign(0.002) TCGA-CG-4443-01 11 64757201 64757201 C T BATF2 Silent p.R75R 0.21 TCGA-CG-4443-01 11 72288594 72288594 C T PDE2A Missense_Mutation p.R887H 0.07 tolerated(0.44) possibly_damaging(0.837) TCGA-CG-4443-01 12 108012102 108012102 A T BTBD11 Missense_Mutation p.Y800F 0.72 tolerated(0.06) probably_damaging(0.993) TCGA-CG-4443-01 12 122441652 122441652 C T WDR66 Silent p.S1144S 0.72 TCGA-CG-4443-01 12 13219655 13219655 G A KIAA1467 Missense_Mutation p.G312R 0.42 deleterious(0) probably_damaging(1) TCGA-CG-4443-01 12 2760857 2760857 G A CACNA1C Missense_Mutation p.V1381I 0.40 deleterious(0) probably_damaging(0.936) TCGA-CG-4443-01 12 33579428 33579431 TATC - SYT10 Splice_Site p.X51_splice 0.48 TCGA-CG-4443-01 12 40041751 40041751 T C C12orf40 Missense_Mutation p.L181P 0.48 deleterious(0.01) possibly_damaging(0.648) TCGA-CG-4443-01 12 465688 465688 C G KDM5A Missense_Mutation p.V230L 0.31 tolerated(0.64) benign(0.007) TCGA-CG-4443-01 12 49438225 49438225 C A KMT2D Nonsense_Mutation p.E1682* 0.28 TCGA-CG-4443-01 12 50855135 50855135 G C LARP4 Intron 0.49 TCGA-CG-4443-01 12 52788868 52788868 C A KRT82 Missense_Mutation p.G478V 0.72 deleterious(0.02) possibly_damaging(0.734) TCGA-CG-4443-01 12 53012327 53012337 TGGGGATAAGA - KRT73 5'UTR 0.96 TCGA-CG-4443-01 12 54893155 54893155 A T NCKAP1L Missense_Mutation p.K40I 0.75 deleterious(0) possibly_damaging(0.649) TCGA-CG-4443-01 12 56574790 56574790 T C SMARCC2 Missense_Mutation p.N351S 0.80 tolerated(0.13) benign(0.292) TCGA-CG-4443-01 12 6058252 6058252 C A VWF Missense_Mutation p.G2791C 0.42 deleterious(0) probably_damaging(0.979) TCGA-CG-4443-01 12 70049272 70049272 C G BEST3 Missense_Mutation p.E474D 0.78 deleterious(0.03) possibly_damaging(0.666) TCGA-CG-4443-01 13 110830564 110830564 T C COL4A1 Missense_Mutation p.K825E 0.62 benign(0.043) TCGA-CG-4443-01 13 50057068 50057068 A G SETDB2 Missense_Mutation p.K463R 0.24 tolerated(0.12) benign(0.049) TCGA-CG-4443-01 13 73320199 73320199 G C BORA Missense_Mutation p.E286Q 0.16 tolerated(0.05) benign(0.002) TCGA-CG-4443-01 14 23872600 23872600 G A MYH6 Silent p.H285H 0.44 TCGA-CG-4443-01 14 52949605 52949605 A G TXNDC16 Missense_Mutation p.L396P 0.38 deleterious(0) probably_damaging(0.998) TCGA-CG-4443-01 14 59797928 59797928 G C DAAM1 Missense_Mutation p.R521T 0.39 tolerated(0.47) unknown(0) TCGA-CG-4443-01 14 60072170 60072170 C G RTN1 Silent p.T676T 0.33 TCGA-CG-4443-01 14 65194601 65194601 A T PLEKHG3 Silent p.A84A 0.20 TCGA-CG-4443-01 15 33999125 33999125 G A RYR3 Silent p.V2163V 0.60 TCGA-CG-4443-01 15 43577113 43577113 G C TGM7 Silent p.S301S 0.39 TCGA-CG-4443-01 16 15100425 15100425 A G PDXDC1 Silent p.Q188Q 0.19 TCGA-CG-4443-01 16 20976517 20976517 C T DNAH3 Missense_Mutation p.V2897M 0.39 deleterious(0) probably_damaging(1) TCGA-CG-4443-01 16 4829688 4829688 G T SEPT12 Intron 0.24 TCGA-CG-4443-01 16 57795042 57795042 G C KIFC3 Silent p.T638T 0.29 TCGA-CG-4443-01 16 75033951 75033951 C G ZNRF1 Missense_Mutation p.L128V 0.50 deleterious(0) possibly_damaging(0.827) TCGA-CG-4443-01 17 34261839 34261839 C T LYZL6 Silent p.R136R 0.40 TCGA-CG-4443-01 17 38546403 38546403 G C TOP2A Silent p.T1427T 0.54 TCGA-CG-4443-01 17 41219625 41219625 C T BRCA1 Missense_Mutation p.D1713N 0.36 deleterious(0) benign(0.005) TCGA-CG-4443-01 17 7340375 7340375 C T TMEM102 Silent p.C359C 0.67 TCGA-CG-4443-01 19 38056612 38056612 C G ZNF571 Missense_Mutation p.E240Q 0.44 tolerated(1) probably_damaging(0.944) TCGA-CG-4443-01 1 11126684 11126684 G T EXOSC10 3'UTR 0.29 TCGA-CG-4443-01 1 152080902 152080902 G A TCHH Silent p.F1597F 0.35 TCGA-CG-4443-01 1 158725605 158725605 T A OR6K6 Missense_Mutation p.Y334N 0.41 tolerated(0.31) benign(0.001) TCGA-CG-4443-01 1 179852066 179852066 T A TOR1AIP1 Silent p.S143S 0.45 TCGA-CG-4443-01 1 197627492 197627492 G A DENND1B Missense_Mutation p.P102S 0.04 deleterious(0) probably_damaging(1) TCGA-CG-4443-01 1 204424993 204424993 C G PIK3C2B Missense_Mutation p.W645S 0.41 deleterious(0.02) possibly_damaging(0.504) TCGA-CG-4443-01 1 20827854 20827854 G C MUL1 Missense_Mutation p.P130A 0.36 tolerated(0.21) possibly_damaging(0.669) TCGA-CG-4443-01 1 228529881 228529881 G T OBSCN Missense_Mutation p.K6989N 0.45 probably_damaging(0.996) TCGA-CG-4443-01 1 229601204 229601204 T C NUP133 Silent p.E754E 0.42 TCGA-CG-4443-01 1 236208770 236208770 C T NID1 Missense_Mutation p.E247K 0.18 tolerated(0.94) benign(0.014) TCGA-CG-4443-01 1 52891085 52891085 C T ZCCHC11 Silent p.L1602L 0.37 TCGA-CG-4443-01 20 1276974 1276974 G A SNPH 5'UTR 0.47 TCGA-CG-4443-01 20 2413184 2413184 C T TGM6 Silent p.I672I 0.45 TCGA-CG-4443-01 20 29992750 29992750 G T DEFB121 Missense_Mutation p.T66K 0.04 tolerated(0.62) possibly_damaging(0.788) TCGA-CG-4443-01 20 35559253 35559253 C A SAMHD1 Missense_Mutation p.V179F 0.46 deleterious(0.02) possibly_damaging(0.536) TCGA-CG-4443-01 20 3898161 3898161 C T PANK2 Intron 0.32 TCGA-CG-4443-01 20 44005922 44005922 G T TP53TG5 Missense_Mutation p.L62M 0.10 deleterious(0.03) probably_damaging(0.999) TCGA-CG-4443-01 20 47864683 47864683 G A ZNFX1 Silent p.I1626I 0.73 TCGA-CG-4443-01 20 50307283 50307283 T A ATP9A Missense_Mutation p.T240S 0.12 tolerated(0.37) benign(0.101) TCGA-CG-4443-01 20 50769930 50769930 C G ZFP64 Missense_Mutation p.K267N 0.12 deleterious(0) probably_damaging(0.998) TCGA-CG-4443-01 20 57767635 57767635 G A ZNF831 Missense_Mutation p.E521K 0.13 tolerated(0.13) benign(0.104) TCGA-CG-4443-01 20 62165631 62165631 C G PTK6 Missense_Mutation p.W130C 0.11 tolerated(0.18) benign(0.259) TCGA-CG-4443-01 21 31869360 31869360 A G KRTAP19-4 Silent p.Y23Y 0.40 TCGA-CG-4443-01 22 43625083 43625083 C A SCUBE1 Missense_Mutation p.C360F 0.24 deleterious(0) possibly_damaging(0.781) TCGA-CG-4443-01 22 43625084 43625084 A G SCUBE1 Missense_Mutation p.C360R 0.25 deleterious(0) probably_damaging(0.928) TCGA-CG-4443-01 22 47116006 47116006 A T CERK Missense_Mutation p.L119Q 0.22 deleterious(0) possibly_damaging(0.873) TCGA-CG-4443-01 2 109381382 109381382 G A RANBP2 Missense_Mutation p.D1463N 0.38 tolerated(0.15) benign(0.047) TCGA-CG-4443-01 2 109522783 109522783 G A EDAR Silent p.N335N 0.40 TCGA-CG-4443-01 2 114256849 114256861 GCTGAGCGCCCTC - FOXD4L1 Frame_Shift_Del p.E7Pfs*41 0.25 TCGA-CG-4443-01 2 158958533 158958533 T C UPP2 Intron 0.43 TCGA-CG-4443-01 2 175436269 175436269 G A WIPF1 Intron 0.52 TCGA-CG-4443-01 2 231380516 231380516 T G SP100 Intron 0.27 TCGA-CG-4443-01 2 233103275 233103275 G A DIS3L2 Missense_Mutation p.V413M 0.44 deleterious(0) probably_damaging(1) TCGA-CG-4443-01 2 233244575 233244575 G A ALPP Missense_Mutation p.V196M 0.39 tolerated(1) benign(0.01) TCGA-CG-4443-01 2 240033331 240033331 G A HDAC4 Silent p.P618P 0.33 TCGA-CG-4443-01 2 27726461 27726474 CTTTTGTGCTCAAT - GCKR Frame_Shift_Del p.F243Cfs*32 0.35 TCGA-CG-4443-01 2 37041531 37041531 G C VIT 3'UTR 0.46 TCGA-CG-4443-01 2 85875937 85875937 G A USP39 3'UTR 0.21 TCGA-CG-4443-01 2 88474331 88474331 A G THNSL2 Missense_Mutation p.K133E 0.37 tolerated(0.07) benign(0.057) TCGA-CG-4443-01 3 10976881 10976881 C T SLC6A11 Missense_Mutation p.P581L 0.34 tolerated(0.36) benign(0) TCGA-CG-4443-01 3 121416746 121416746 T G GOLGB1 Missense_Mutation p.Q875P 0.48 possibly_damaging(0.499) TCGA-CG-4443-01 3 145838987 145838987 T A PLOD2 Missense_Mutation p.I84F 0.37 tolerated(0.06) possibly_damaging(0.865) TCGA-CG-4443-01 3 157271104 157271104 G T C3orf55 Nonsense_Mutation p.G20* 0.23 TCGA-CG-4443-01 3 186395370 186395370 C T HRG Missense_Mutation p.H426Y 0.40 tolerated(0.95) benign(0.403) TCGA-CG-4443-01 3 189584511 189584511 G A TP63 Silent p.G269G 0.52 TCGA-CG-4443-01 3 42738538 42738538 G T HHATL Missense_Mutation p.P322H 0.34 deleterious(0) probably_damaging(1) TCGA-CG-4443-01 3 47462450 47462450 C G SCAP Missense_Mutation p.V439L 0.22 deleterious(0.01) probably_damaging(0.968) TCGA-CG-4443-01 4 100237113 100237113 A C ADH1B Missense_Mutation p.V170G 0.04 deleterious(0.01) possibly_damaging(0.873) TCGA-CG-4443-01 4 47559779 47559779 G A ATP10D Silent p.S641S 0.47 TCGA-CG-4443-01 4 8583111 8583111 G A GPR78 Silent p.S134S 0.26 TCGA-CG-4443-01 5 135610444 135610444 C T TRPC7 Missense_Mutation p.A349T 0.71 tolerated(0.34) benign(0.27) TCGA-CG-4443-01 5 176022630 176022630 G A CDHR2 Missense_Mutation p.G1297E 0.47 tolerated(1) benign(0.001) TCGA-CG-4443-01 5 180057715 180057715 C A FLT4 Silent p.V80V 0.38 TCGA-CG-4443-01 5 1815967 1815967 C G NDUFS6 Missense_Mutation p.D104E 0.37 deleterious(0.02) possibly_damaging(0.831) TCGA-CG-4443-01 5 21755822 21755822 C G CDH12 Missense_Mutation p.R588P 0.40 deleterious(0) probably_damaging(0.948) TCGA-CG-4443-01 5 9063157 9063157 C G SEMA5A Missense_Mutation p.W787S 0.06 deleterious(0) probably_damaging(0.998) TCGA-CG-4443-01 6 131206403 131206413 TCGGAGCTAGT AAA EPB41L2 Splice_Site p.X554_splice 0.50 TCGA-CG-4443-01 6 150004716 150004716 T C LATS1 Silent p.V503V 0.76 TCGA-CG-4443-01 6 46825952 46825952 G T GPR116 Missense_Mutation p.L1230I 0.38 deleterious(0) probably_damaging(1) TCGA-CG-4443-01 6 46825953 46825953 G T GPR116 Silent p.G1229G 0.40 TCGA-CG-4443-01 7 45018563 45018563 T A MYO1G 5'UTR 0.43 TCGA-CG-4443-01 7 47874786 47874786 G A PKD1L1 Missense_Mutation p.T2000I 0.10 deleterious(0.04) benign(0.122) TCGA-CG-4443-01 7 86824010 86824010 C A DMTF1 Missense_Mutation p.S680Y 0.32 deleterious_low_confidence(0) possibly_damaging(0.861) TCGA-CG-4443-01 8 145004159 145004159 G C PLEC Missense_Mutation p.A1032G 0.25 unknown(0) TCGA-CG-4443-01 8 37964667 37964667 A T ASH2L Silent p.T128T 0.49 TCGA-CG-4443-01 8 66639406 66639415 TTGTATAAAG - PDE7A Frame_Shift_Del p.T273Rfs*18 0.41 TCGA-CG-4443-01 8 89339413 89339413 G A MMP16 Missense_Mutation p.T8I 0.26 tolerated_low_confidence(0.14) benign(0.004) TCGA-CG-4443-01 9 128094285 128094285 G C GAPVD1 Missense_Mutation p.D752H 0.43 deleterious(0.03) possibly_damaging(0.889) TCGA-CG-4443-01 9 129595849 129595849 T A ZBTB43 Missense_Mutation p.V354E 0.37 tolerated(0.83) benign(0.004) TCGA-CG-4443-01 9 130860953 130860953 C G SLC25A25 Intron 0.34 TCGA-CG-4443-01 9 131515085 131515085 A G ZER1 Missense_Mutation p.F264L 0.37 deleterious(0.01) possibly_damaging(0.708) TCGA-CG-4443-01 9 139564459 139564459 C T EGFL7 Missense_Mutation p.S136L 0.32 deleterious(0.02) benign(0.013) TCGA-CG-4443-01 9 35650807 35650807 G A SIT1 Missense_Mutation p.T15I 0.35 tolerated_low_confidence(0.1) benign(0.012) TCGA-CG-4443-01 9 35751395 35751395 C A RGP1 Missense_Mutation p.S207Y 0.44 deleterious(0) benign(0.03) TCGA-CG-4443-01 X 118767452 118767452 T C SEPT6 Silent p.L320L 0.88 TCGA-CG-4443-01 X 129042700 129042700 C G UTP14A Silent p.V76V 0.87 TCGA-CG-4443-01 X 153070157 153070157 C A PDZD4 Missense_Mutation p.A321S 0.23 tolerated(0.22) benign(0.005) TCGA-CG-4443-01 X 53222343 53222343 C G KDM5C Missense_Mutation p.E1497Q 0.86 tolerated_low_confidence(0.49) benign(0.058) TCGA-CG-4443-01 X 79939565 79939565 C A BRWD3 Missense_Mutation p.D1393Y 0.76 deleterious(0) probably_damaging(1) TCGA-CG-4444-01 10 111667564 111667564 A C XPNPEP1 Missense_Mutation p.M44R 0.11 deleterious(0) probably_damaging(0.979) TCGA-CG-4444-01 10 111667565 111667565 T A XPNPEP1 Missense_Mutation p.M44L 0.11 deleterious(0.02) possibly_damaging(0.771) TCGA-CG-4444-01 10 13040500 13040500 A C CCDC3 Missense_Mutation p.N129K 0.24 deleterious(0) possibly_damaging(0.871) TCGA-CG-4444-01 10 25197604 25197604 C T PRTFDC1 Intron 0.12 TCGA-CG-4444-01 10 28348658 28348658 T A MPP7 Nonsense_Mutation p.R407* 0.14 TCGA-CG-4444-01 10 50122166 50122166 T G LRRC18 Missense_Mutation p.K12T 0.23 tolerated(0.07) possibly_damaging(0.879) TCGA-CG-4444-01 10 58118340 58118340 T - ZWINT Frame_Shift_Del p.R257Efs*18 0.13 TCGA-CG-4444-01 10 7214510 7214510 C T SFMBT2 Missense_Mutation p.V700M 0.14 deleterious(0) probably_damaging(0.939) TCGA-CG-4444-01 10 74714363 74714363 C T PLA2G12B Silent p.T27T 0.07 TCGA-CG-4444-01 10 90427343 90427343 T C LIPF Silent p.Y51Y 0.45 TCGA-CG-4444-01 11 17099222 17099222 G C RPS13 5'UTR 0.64 TCGA-CG-4444-01 11 47712259 47712259 C G AGBL2 Missense_Mutation p.V334L 0.14 tolerated(0.33) benign(0.001) TCGA-CG-4444-01 11 55340006 55340006 A C OR4C16 Missense_Mutation p.S135R 0.03 tolerated(0.34) benign(0.342) TCGA-CG-4444-01 11 56043387 56043387 A T OR5T1 Silent p.P91P 0.21 TCGA-CG-4444-01 11 56043388 56043388 A T OR5T1 Nonsense_Mutation p.K92* 0.17 TCGA-CG-4444-01 11 56043389 56043389 A G OR5T1 Missense_Mutation p.K92R 0.19 tolerated(0.1) benign(0.023) TCGA-CG-4444-01 11 56043951 56043951 T G OR5T1 Silent p.T279T 0.15 TCGA-CG-4444-01 11 67208754 67208754 C G CORO1B Intron 0.12 TCGA-CG-4444-01 11 72533143 72533143 G A ATG16L2 Silent p.Q149Q 0.40 TCGA-CG-4444-01 11 73120596 73120596 G A FAM168A Silent p.A177A 0.32 TCGA-CG-4444-01 11 78412964 78412964 T G TENM4 Missense_Mutation p.K1565T 0.32 tolerated(0.19) benign(0.001) TCGA-CG-4444-01 11 7982304 7982304 C T NLRP10 Silent p.T285T 0.54 TCGA-CG-4444-01 11 84028200 84028200 G A DLG2 Intron 0.09 TCGA-CG-4444-01 11 9087507 9087507 C G SCUBE2 Missense_Mutation p.E261Q 0.11 tolerated(0.09) probably_damaging(0.944) TCGA-CG-4444-01 11 92533457 92533457 T C FAT3 Silent p.F2426F 0.11 TCGA-CG-4444-01 11 92533693 92533693 T G FAT3 Missense_Mutation p.V2505G 0.24 probably_damaging(0.994) TCGA-CG-4444-01 12 113600965 113600965 G A DDX54 Missense_Mutation p.R685W 0.08 deleterious(0.01) probably_damaging(0.954) TCGA-CG-4444-01 12 18435597 18435597 G A PIK3C2G Silent p.R194R 0.03 TCGA-CG-4444-01 12 1943438 1943438 C T LRTM2 Missense_Mutation p.R222C 0.20 deleterious(0.01) possibly_damaging(0.513) TCGA-CG-4444-01 12 32896438 32896438 C G DNM1L 3'UTR 0.38 TCGA-CG-4444-01 12 47172533 47172533 G T SLC38A4 Silent p.P248P 0.21 TCGA-CG-4444-01 12 48596871 48596871 G A OR10AD1 Missense_Mutation p.L69F 0.14 tolerated(1) benign(0.002) TCGA-CG-4444-01 12 52775177 52775177 G A KRT84 Missense_Mutation p.R349W 0.59 deleterious(0.02) probably_damaging(1) TCGA-CG-4444-01 12 62147441 62147441 A G FAM19A2 Missense_Mutation p.W116R 0.22 deleterious(0) probably_damaging(0.998) TCGA-CG-4444-01 12 72233533 72233533 T C TBC1D15 5'UTR 0.15 TCGA-CG-4444-01 12 7301586 7301586 C A CLSTN3 Silent p.S622S 0.06 TCGA-CG-4444-01 12 8242551 8242551 G A NECAP1 Missense_Mutation p.D39N 0.07 deleterious(0.02) benign(0.306) TCGA-CG-4444-01 12 8975277 8975277 G A A2ML1 Silent p.L10L 0.06 TCGA-CG-4444-01 13 22275428 22275428 C T FGF9 Nonsense_Mutation p.R161* 0.37 TCGA-CG-4444-01 13 28608309 28608309 C T FLT3 Missense_Mutation p.G583S 0.12 deleterious(0) probably_damaging(0.999) TCGA-CG-4444-01 13 43896619 43896619 T A ENOX1 Missense_Mutation p.S388C 0.53 tolerated(0.14) probably_damaging(0.997) TCGA-CG-4444-01 13 84454671 84454671 C A SLITRK1 Silent p.A324A 0.09 TCGA-CG-4444-01 13 92051379 92051379 G A GPC5 Missense_Mutation p.V27M 0.12 tolerated(0.16) benign(0.021) TCGA-CG-4444-01 14 20216435 20216435 G T OR4Q3 Missense_Mutation p.L283F 0.21 tolerated(0.06) probably_damaging(0.998) TCGA-CG-4444-01 14 20711092 20711092 A C OR11H4 Missense_Mutation p.T48P 0.21 deleterious(0) probably_damaging(0.915) TCGA-CG-4444-01 14 57741028 57741028 A G AP5M1 Silent p.E47E 0.13 TCGA-CG-4444-01 14 61346450 61346450 G C MNAT1 Missense_Mutation p.A236P 0.14 tolerated(0.16) benign(0.026) TCGA-CG-4444-01 14 63174582 63174582 T G KCNH5 Missense_Mutation p.S871R 0.21 deleterious_low_confidence(0.04) benign(0.012) TCGA-CG-4444-01 14 75321889 75321889 C T PROX2 Silent p.S348S 0.29 TCGA-CG-4444-01 14 77745169 77745169 G A POMT2 Silent p.L645L 0.12 TCGA-CG-4444-01 14 81943368 81943368 C T SEL1L Missense_Mutation p.R778Q 0.13 tolerated_low_confidence(0.3) unknown(0) TCGA-CG-4444-01 15 24921536 24921536 C T NPAP1 Silent p.D174D 0.24 TCGA-CG-4444-01 15 48057176 48057176 A T SEMA6D Missense_Mutation p.K450N 0.31 deleterious(0) probably_damaging(1) TCGA-CG-4444-01 15 50901825 50901825 A C TRPM7 Missense_Mutation p.F845V 0.32 tolerated(0.47) possibly_damaging(0.54) TCGA-CG-4444-01 15 51750813 51750813 A G DMXL2 Silent p.N2675N 0.10 TCGA-CG-4444-01 15 60795067 60795067 C T RORA Splice_Site p.X392_splice 0.04 TCGA-CG-4444-01 15 65489069 65489069 T G CILP Nonstop_Mutation p.*1185Yext*14 0.34 TCGA-CG-4444-01 15 65494254 65494254 T G CILP Missense_Mutation p.D381A 0.12 tolerated(0.11) benign(0.16) TCGA-CG-4444-01 15 78882650 78882650 C T CHRNA5 Missense_Mutation p.S306F 0.42 deleterious(0) probably_damaging(1) TCGA-CG-4444-01 15 86790989 86790989 A T AGBL1 Missense_Mutation p.N159I 0.25 deleterious(0.01) benign(0.365) TCGA-CG-4444-01 15 89198676 89198676 G C ISG20 Missense_Mutation p.D154H 0.19 deleterious(0) probably_damaging(1) TCGA-CG-4444-01 16 2814700 2814700 G A SRRM2 Missense_Mutation p.V1391M 0.06 unknown(0) TCGA-CG-4444-01 16 3100341 3100341 A C MMP25 Missense_Mutation p.E152A 0.30 tolerated(0.85) benign(0.015) TCGA-CG-4444-01 16 427480 427480 G A TMEM8A Silent p.T135T 0.12 TCGA-CG-4444-01 16 49407930 49407930 G A C16orf78 Missense_Mutation p.R27H 0.29 deleterious(0) possibly_damaging(0.708) TCGA-CG-4444-01 16 716300 716300 A G WDR90 Missense_Mutation p.S1564G 0.11 tolerated(0.16) benign(0.104) TCGA-CG-4444-01 16 74943480 74943480 G A WDR59 Missense_Mutation p.R521W 0.10 deleterious(0) possibly_damaging(0.828) TCGA-CG-4444-01 16 848696 848696 G T GNG13 3'UTR 0.05 TCGA-CG-4444-01 17 10367883 10367883 T G MYH4 Missense_Mutation p.K185T 0.26 deleterious(0) benign(0.383) TCGA-CG-4444-01 17 27959445 27959445 G A SSH2 Missense_Mutation p.R896C 0.15 deleterious_low_confidence(0) probably_damaging(1) TCGA-CG-4444-01 17 38421332 38421332 G T WIPF2 Missense_Mutation p.A302S 0.04 tolerated(0.49) benign(0.005) TCGA-CG-4444-01 17 47590140 47590140 C G NGFR Silent p.L351L 0.53 TCGA-CG-4444-01 17 48271380 48271380 C T COL1A1 Missense_Mutation p.R564H 0.22 unknown(0) TCGA-CG-4444-01 17 6483160 6483160 T G KIAA0753 Missense_Mutation p.E937D 0.23 deleterious(0.01) probably_damaging(0.92) TCGA-CG-4444-01 17 7578395 7578395 G A TP53 Missense_Mutation p.H179Y 0.60 deleterious(0) probably_damaging(1) TCGA-CG-4444-01 17 76087561 76087561 G T TNRC6C Missense_Mutation p.M1278I 0.42 tolerated(0.34) benign(0.001) TCGA-CG-4444-01 17 8077813 8077813 C A TMEM107 Intron 0.21 TCGA-CG-4444-01 18 45374881 45374881 C T SMAD2 Missense_Mutation p.R321Q 0.12 deleterious(0.03) possibly_damaging(0.726) TCGA-CG-4444-01 18 72343302 72343302 T G ZNF407 Missense_Mutation p.D109E 0.11 tolerated(0.98) benign(0.002) TCGA-CG-4444-01 19 17657570 17657570 G A FAM129C Missense_Mutation p.V575I 0.14 tolerated(0.51) benign(0.036) TCGA-CG-4444-01 19 21132661 21132661 T G ZNF85 Missense_Mutation p.I447M 0.10 deleterious(0.01) probably_damaging(0.964) TCGA-CG-4444-01 19 22574931 22574931 T G ZNF98 Missense_Mutation p.K369T 0.58 deleterious(0.01) probably_damaging(0.992) TCGA-CG-4444-01 19 33464169 33464169 G T C19orf40 Nonsense_Mutation p.E23* 0.09 TCGA-CG-4444-01 19 33464171 33464171 G A C19orf40 Silent p.E23E 0.09 TCGA-CG-4444-01 19 36884051 36884051 C T ZFP82 Silent p.K397K 0.04 TCGA-CG-4444-01 19 46174616 46174616 G A GIPR Silent p.A82A 0.23 TCGA-CG-4444-01 19 50958830 50958830 A G MYBPC2 Missense_Mutation p.K756R 0.41 deleterious(0.05) benign(0.17) TCGA-CG-4444-01 19 53855942 53855942 T G ZNF845 Missense_Mutation p.F672V 0.05 deleterious(0) possibly_damaging(0.817) TCGA-CG-4444-01 19 54544331 54544331 C T VSTM1 Missense_Mutation p.A199T 0.28 tolerated(0.34) benign(0.115) TCGA-CG-4444-01 19 55856048 55856048 G A AC020922.1 5'UTR 0.31 TCGA-CG-4444-01 19 57327776 57327776 A C PEG3 Silent p.T678T 0.20 TCGA-CG-4444-01 19 6040129 6040129 G A RFX2 Silent p.P128P 0.19 TCGA-CG-4444-01 19 9046975 9046975 A C MUC16 Missense_Mutation p.S11552R 0.27 benign(0.016) TCGA-CG-4444-01 19 9088917 9088917 A T MUC16 Silent p.T966T 0.40 TCGA-CG-4444-01 1 11008159 11008159 C T C1orf127 Missense_Mutation p.S678N 0.17 tolerated(0.2) possibly_damaging(0.542) TCGA-CG-4444-01 1 118640394 118640394 T A SPAG17 Missense_Mutation p.N304Y 0.13 deleterious(0) probably_damaging(0.971) TCGA-CG-4444-01 1 13036391 13036391 G A PRAMEF22 Missense_Mutation p.V155I 0.52 tolerated(0.08) benign(0.101) TCGA-CG-4444-01 1 152648487 152648487 C T LCE2C 5'UTR 0.03 TCGA-CG-4444-01 1 153727151 153727151 G A INTS3 Missense_Mutation p.R298Q 0.04 deleterious(0) possibly_damaging(0.677) TCGA-CG-4444-01 1 157765772 157765772 G A FCRL1 3'UTR 0.57 TCGA-CG-4444-01 1 186026410 186026410 A C HMCN1 Missense_Mutation p.S2397R 0.05 probably_damaging(0.997) TCGA-CG-4444-01 1 192127818 192127818 A C RGS18 Missense_Mutation p.K17N 0.29 deleterious(0.01) possibly_damaging(0.628) TCGA-CG-4444-01 1 206760052 206760052 G A RASSF5 Intron 0.09 TCGA-CG-4444-01 1 216373111 216373111 A G USH2A Silent p.C1223C 0.17 TCGA-CG-4444-01 1 232577524 232577524 G C SIPA1L2 Missense_Mutation p.S1176R 0.19 tolerated(0.62) benign(0.017) TCGA-CG-4444-01 1 237804268 237804268 T G RYR2 Missense_Mutation p.I2396S 0.12 probably_damaging(0.998) TCGA-CG-4444-01 1 240656338 240656338 G C GREM2 Silent p.L146L 0.06 TCGA-CG-4444-01 1 247655335 247655335 A C OR2W5 RNA 0.42 TCGA-CG-4444-01 1 248309088 248309088 C A OR2M5 Silent p.I213I 0.11 TCGA-CG-4444-01 1 34684357 34684357 T G C1orf94 Missense_Mutation p.F598V 0.14 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CG-4444-01 1 59812016 59812017 - G FGGY Frame_Shift_Ins p.V140Gfs*25 0.22 TCGA-CG-4444-01 1 72076709 72076709 T G NEGR1 Missense_Mutation p.K263T 0.20 deleterious(0) possibly_damaging(0.728) TCGA-CG-4444-01 1 86307783 86307783 G T COL24A1 Missense_Mutation p.P1180T 0.04 tolerated(0.23) benign(0.287) TCGA-CG-4444-01 1 89587653 89587653 C G GBP2 5'UTR 0.12 TCGA-CG-4444-01 1 91846476 91846476 A C HFM1 Missense_Mutation p.F289C 0.21 deleterious(0) probably_damaging(0.928) TCGA-CG-4444-01 1 95530569 95530569 C T ALG14 Silent p.G47G 0.15 TCGA-CG-4444-01 20 18531753 18531753 C T SEC23B Silent p.S642S 0.12 TCGA-CG-4444-01 20 23804666 23804666 T C CST2 Silent p.Q139Q 0.16 TCGA-CG-4444-01 20 45130817 45130817 G A ZNF334 Silent p.F387F 0.06 TCGA-CG-4444-01 20 58411616 58411616 G A PHACTR3 Splice_Site p.X462_splice 0.07 TCGA-CG-4444-01 20 60427821 60427821 C T CDH4 Silent p.H248H 0.14 TCGA-CG-4444-01 20 62039791 62039791 C T KCNQ2 Missense_Mutation p.G621E 0.18 deleterious(0) probably_damaging(0.996) TCGA-CG-4444-01 20 62853334 62853334 G A MYT1 Missense_Mutation p.G777E 0.11 probably_damaging(1) TCGA-CG-4444-01 21 11039169 11039169 T G BAGE2 RNA 0.03 TCGA-CG-4444-01 22 17662401 17662401 T G CECR1 Missense_Mutation p.K503T 0.21 tolerated(0.37) benign(0.003) TCGA-CG-4444-01 22 18324716 18324716 G A MICAL3 Silent p.I891I 0.50 TCGA-CG-4444-01 22 39884022 39884022 C T MGAT3 Missense_Mutation p.R224C 0.08 deleterious(0) probably_damaging(0.999) TCGA-CG-4444-01 2 100623244 100623244 T C AFF3 Silent p.Q266Q 0.16 TCGA-CG-4444-01 2 133540288 133540288 T G NCKAP5 Missense_Mutation p.S1366R 0.17 deleterious(0.05) benign(0.031) TCGA-CG-4444-01 2 141625375 141625375 C T LRP1B Missense_Mutation p.D1455N 0.43 possibly_damaging(0.539) TCGA-CG-4444-01 2 148715948 148715948 C T ORC4 Silent p.L102L 0.11 TCGA-CG-4444-01 2 164466918 164466918 T G FIGN Missense_Mutation p.E475A 0.13 deleterious(0.01) probably_damaging(0.992) TCGA-CG-4444-01 2 169940025 169940025 G A DHRS9 Missense_Mutation p.G167D 0.28 deleterious(0) probably_damaging(0.997) TCGA-CG-4444-01 2 171702021 171702021 G A GAD1 Missense_Mutation p.A253T 0.23 tolerated(0.28) probably_damaging(1) TCGA-CG-4444-01 2 179466785 179466785 G A TTN Missense_Mutation p.R18405C 0.18 TCGA-CG-4444-01 2 179482583 179482583 C A TTN Missense_Mutation p.R15832L 0.15 TCGA-CG-4444-01 2 179579038 179579038 G A TTN Silent p.F8821F 0.12 TCGA-CG-4444-01 2 179594123 179594123 A C TTN Missense_Mutation p.F6254V 0.09 TCGA-CG-4444-01 2 207620121 207620121 T G MDH1B Missense_Mutation p.E174D 0.12 deleterious(0.03) benign(0.027) TCGA-CG-4444-01 2 211507265 211507265 T G CPS1 Missense_Mutation p.L1012R 0.15 tolerated(0.17) possibly_damaging(0.812) TCGA-CG-4444-01 2 21230450 21230450 T G APOB Missense_Mutation p.K3097T 0.09 probably_damaging(0.997) TCGA-CG-4444-01 2 215802254 215802254 A C ABCA12 Missense_Mutation p.F2508V 0.15 deleterious(0) probably_damaging(0.999) TCGA-CG-4444-01 2 217012887 217012887 G A XRCC5 Missense_Mutation p.A520T 0.15 tolerated(0.64) benign(0.002) TCGA-CG-4444-01 2 230282864 230282864 G C DNER Silent p.L523L 0.12 TCGA-CG-4444-01 2 26685000 26685000 C T OTOF Missense_Mutation p.D1748N 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-CG-4444-01 2 27156127 27156127 C A DPYSL5 Missense_Mutation p.T239N 0.23 deleterious(0) possibly_damaging(0.739) TCGA-CG-4444-01 2 29462543 29462543 T G ALK Intron 0.39 TCGA-CG-4444-01 2 43802126 43802126 A G THADA Silent p.L360L 0.36 TCGA-CG-4444-01 2 49216184 49216184 T C FSHR Silent p.Q152Q 0.40 TCGA-CG-4444-01 2 60679678 60679678 G A BCL11A 3'Flank 0.32 TCGA-CG-4444-01 3 135871486 135871486 A C MSL2 Silent p.P79P 0.20 TCGA-CG-4444-01 3 151165623 151165623 T A IGSF10 Missense_Mutation p.S716C 0.27 deleterious(0.04) possibly_damaging(0.635) TCGA-CG-4444-01 3 164907653 164907653 A C SLITRK3 Silent p.S322S 0.19 TCGA-CG-4444-01 3 180379665 180379665 T G CCDC39 Missense_Mutation p.K114T 0.27 deleterious(0.01) possibly_damaging(0.791) TCGA-CG-4444-01 3 19389349 19389349 G C KCNH8 Missense_Mutation p.V235L 0.07 deleterious(0) probably_damaging(0.941) TCGA-CG-4444-01 3 36898133 36898135 ATG - TRANK1 In_Frame_Del p.I982del 0.09 TCGA-CG-4444-01 3 44955298 44955298 A C TGM4 3'UTR 0.25 TCGA-CG-4444-01 3 51399300 51399300 T G DOCK3 Missense_Mutation p.L1673V 0.25 tolerated(0.4) benign(0.004) TCGA-CG-4444-01 3 78667120 78667120 C A ROBO1 Missense_Mutation p.G1316V 0.08 deleterious(0) probably_damaging(0.997) TCGA-CG-4444-01 3 89480445 89480445 A T EPHA3 Missense_Mutation p.K761M 0.11 deleterious(0) probably_damaging(1) TCGA-CG-4444-01 4 126242602 126242602 G T FAT4 Missense_Mutation p.R1679L 0.14 probably_damaging(0.926) TCGA-CG-4444-01 4 156696213 156696213 A C GUCY1B3 Missense_Mutation p.K57N 0.11 tolerated(0.16) benign(0.012) TCGA-CG-4444-01 4 165962283 165962283 A C TRIM60 Missense_Mutation p.E353D 0.35 deleterious(0.02) possibly_damaging(0.822) TCGA-CG-4444-01 4 1807537 1807537 C T FGFR3 Missense_Mutation p.A571V 0.15 deleterious(0.02) probably_damaging(0.945) TCGA-CG-4444-01 4 189064872 189064872 T C TRIML1 Intron 0.12 TCGA-CG-4444-01 4 2948261 2948261 G T NOP14 Missense_Mutation p.L505I 0.37 deleterious(0.05) probably_damaging(0.997) TCGA-CG-4444-01 4 57182325 57182325 C T KIAA1211 Missense_Mutation p.A886V 0.30 tolerated(0.22) benign(0) TCGA-CG-4444-01 4 66189893 66189893 T A EPHA5 Missense_Mutation p.K1018M 0.13 deleterious(0.01) probably_damaging(0.997) TCGA-CG-4444-01 4 68441207 68441207 A C STAP1 Silent p.V99V 0.30 TCGA-CG-4444-01 4 68688159 68688159 C T TMPRSS11D Missense_Mutation p.G385R 0.15 deleterious(0) probably_damaging(1) TCGA-CG-4444-01 5 108295030 108295030 G T FER Silent p.L546L 0.20 TCGA-CG-4444-01 5 108295031 108295031 C T FER Silent p.L547L 0.19 TCGA-CG-4444-01 5 10973668 10973668 T G CTNND2 Missense_Mutation p.K1192T 0.14 deleterious(0) probably_damaging(0.994) TCGA-CG-4444-01 5 110407428 110407428 T G TSLP 5'UTR 0.25 TCGA-CG-4444-01 5 127648460 127648460 T G FBN2 Missense_Mutation p.K1582T 0.38 tolerated(0.05) benign(0.138) TCGA-CG-4444-01 5 140209052 140209052 A G PCDHA6 Missense_Mutation p.E459G 0.24 deleterious_low_confidence(0.01) benign(0.229) TCGA-CG-4444-01 5 140229433 140229433 C T PCDHA9 Silent p.N451N 0.33 TCGA-CG-4444-01 5 140590933 140590933 C G PCDHB12 3'UTR 0.27 TCGA-CG-4444-01 5 140596144 140596144 G A PCDHB13 3'UTR 0.22 TCGA-CG-4444-01 5 145895420 145895420 G T GPR151 Missense_Mutation p.S86Y 0.13 tolerated(0.08) possibly_damaging(0.529) TCGA-CG-4444-01 5 169267776 169267776 C T DOCK2 Missense_Mutation p.H907Y 0.42 deleterious(0.01) possibly_damaging(0.905) TCGA-CG-4444-01 5 170148760 170148760 A C KCNIP1 Intron 0.22 TCGA-CG-4444-01 5 24487649 24487649 A G CDH10 3'UTR 0.17 TCGA-CG-4444-01 5 33936975 33936975 C T RXFP3 Nonsense_Mutation p.Q44* 0.10 TCGA-CG-4444-01 5 35047947 35047947 G A AGXT2 Silent p.S17S 0.64 TCGA-CG-4444-01 5 35649490 35649490 G A SPEF2 Missense_Mutation p.E252K 0.10 deleterious(0) probably_damaging(0.99) TCGA-CG-4444-01 5 43700241 43700241 C A NNT Missense_Mutation p.A966E 0.09 deleterious(0) probably_damaging(1) TCGA-CG-4444-01 5 484801 484801 C T SLC9A3 Missense_Mutation p.V256M 0.25 deleterious(0) probably_damaging(1) TCGA-CG-4444-01 5 82373314 82373314 A G TMEM167A 5'UTR 0.27 TCGA-CG-4444-01 5 93856182 93856182 T A KIAA0825 Silent p.T247T 0.34 TCGA-CG-4444-01 6 110734556 110734556 T G DDO Missense_Mutation p.K65T 0.09 deleterious(0.04) benign(0.127) TCGA-CG-4444-01 6 117853437 117853437 C G DCBLD1 Missense_Mutation p.C200W 0.04 deleterious(0.03) possibly_damaging(0.827) TCGA-CG-4444-01 6 131520709 131520709 A C AKAP7 Missense_Mutation p.K233T 0.22 deleterious(0.01) possibly_damaging(0.828) TCGA-CG-4444-01 6 133783490 133783490 T G EYA4 Missense_Mutation p.L152R 0.22 deleterious(0) probably_damaging(0.999) TCGA-CG-4444-01 6 136599308 136599308 A C BCLAF1 Missense_Mutation p.S237R 0.07 deleterious_low_confidence(0.02) possibly_damaging(0.504) TCGA-CG-4444-01 6 153076475 153076475 A G VIP Missense_Mutation p.K101R 0.06 tolerated(0.37) probably_damaging(0.999) TCGA-CG-4444-01 6 45870858 45870858 G A CLIC5 Silent p.Y400Y 0.26 TCGA-CG-4444-01 6 51524237 51524237 A C PKHD1 Missense_Mutation p.L3563V 0.23 tolerated(0.62) benign(0.065) TCGA-CG-4444-01 6 51611659 51611659 A C PKHD1 Missense_Mutation p.S3286R 0.24 tolerated(0.08) probably_damaging(0.996) TCGA-CG-4444-01 6 56391317 56391317 T G DST Missense_Mutation p.N3368H 0.13 probably_damaging(1) TCGA-CG-4444-01 6 72678732 72678732 A G RIMS1 Missense_Mutation p.R71G 0.08 deleterious(0.04) probably_damaging(0.942) TCGA-CG-4444-01 6 75797317 75797317 G C COL12A1 Missense_Mutation p.P3053A 0.06 benign(0.022) TCGA-CG-4444-01 6 88768524 88768524 T G SPACA1 Missense_Mutation p.L153R 0.29 deleterious(0.02) benign(0.167) TCGA-CG-4444-01 7 100552437 100552437 A T MUC3A Silent p.S396S 0.15 TCGA-CG-4444-01 7 114268850 114268850 C T FOXP2 Intron 0.19 TCGA-CG-4444-01 7 11485942 11485942 T A THSD7A Missense_Mutation p.K937I 0.15 deleterious(0) probably_damaging(0.979) TCGA-CG-4444-01 7 126173313 126173313 A T GRM8 Missense_Mutation p.L708H 0.41 deleterious(0.01) possibly_damaging(0.882) TCGA-CG-4444-01 7 146825791 146825791 T G CNTNAP2 Missense_Mutation p.F316V 0.14 tolerated(0.06) probably_damaging(0.952) TCGA-CG-4444-01 7 150417426 150417426 C A GIMAP1 Missense_Mutation p.P112T 0.46 deleterious(0) probably_damaging(1) TCGA-CG-4444-01 7 150707215 150707215 C T NOS3 Missense_Mutation p.P842L 0.11 tolerated(0.06) benign(0.051) TCGA-CG-4444-01 7 31132307 31132307 T G ADCYAP1R1 Missense_Mutation p.L335R 0.16 deleterious(0) probably_damaging(1) TCGA-CG-4444-01 7 5338715 5338715 G A SLC29A4 Missense_Mutation p.V327M 0.30 tolerated(0.06) benign(0.213) TCGA-CG-4444-01 7 82582652 82582652 A C PCLO Silent p.T2539T 0.41 TCGA-CG-4444-01 7 86522399 86522399 C T KIAA1324L Nonsense_Mutation p.W901* 0.07 TCGA-CG-4444-01 8 100861067 100861067 T G VPS13B Missense_Mutation p.F3361V 0.05 tolerated(0.6) benign(0.307) TCGA-CG-4444-01 8 62212731 62212731 T C CLVS1 Silent p.D115D 0.22 TCGA-CG-4444-01 8 70981820 70981820 C A PRDM14 Silent p.L92L 0.83 TCGA-CG-4444-01 8 97797431 97797431 A G CPQ Silent p.K102K 0.09 TCGA-CG-4444-01 9 107513407 107513407 T C NIPSNAP3A Silent p.F77F 0.06 TCGA-CG-4444-01 9 119106909 119106909 C A PAPPA Nonsense_Mutation p.Y1233* 0.20 TCGA-CG-4444-01 9 123620323 123620323 G A PHF19 Missense_Mutation p.R548W 0.24 deleterious(0) probably_damaging(1) TCGA-CG-4444-01 9 138903451 138903451 A G NACC2 Missense_Mutation p.F559L 0.50 deleterious_low_confidence(0) unknown(0) TCGA-CG-4444-01 9 34660279 34660279 C G IL11RA Missense_Mutation p.P321A 0.03 tolerated(0.32) benign(0.007) TCGA-CG-4444-01 X 105153078 105153078 A G NRK Missense_Mutation p.Q483R 0.45 deleterious(0.01) benign(0.275) TCGA-CG-4444-01 X 11139960 11139960 T A HCCS 3'UTR 0.43 TCGA-CG-4444-01 X 125299786 125299786 T G DCAF12L2 Missense_Mutation p.K41T 0.74 tolerated(0.06) benign(0.007) TCGA-CG-4444-01 X 130417042 130417042 G A IGSF1 Silent p.I288I 0.13 TCGA-CG-4444-01 X 21670583 21670583 G C CNKSR2 Missense_Mutation p.D1017H 0.71 tolerated(0.05) benign(0.289) TCGA-CG-4444-01 X 26212089 26212089 A C MAGEB6 Silent p.S42S 0.40 TCGA-CG-4444-01 X 32662249 32662249 T G DMD Missense_Mutation p.N444T 0.37 benign(0.351) TCGA-CG-4444-01 X 79698243 79698243 A C FAM46D Missense_Mutation p.S69R 0.22 deleterious(0) probably_damaging(1) TCGA-CG-4444-01 X 91131988 91131988 A G PCDH11X Missense_Mutation p.K250R 0.05 tolerated(0.16) benign(0.003) TCGA-CG-4444-01 X 91133430 91133430 G A PCDH11X Missense_Mutation p.G731S 0.75 deleterious(0) probably_damaging(1) TCGA-CG-4449-01 10 115970506 115970506 C A TDRD1 Silent p.G517G 0.12 TCGA-CG-4449-01 10 119043857 119043857 A C PDZD8 Missense_Mutation p.L796W 0.21 tolerated(0.07) possibly_damaging(0.855) TCGA-CG-4449-01 10 133757520 133757520 C T PPP2R2D Nonsense_Mutation p.R145* 0.34 TCGA-CG-4449-01 10 17686324 17686324 C T STAM 5'UTR 0.14 TCGA-CG-4449-01 10 43881940 43881940 A G HNRNPF 3'UTR 0.24 TCGA-CG-4449-01 10 75289641 75289641 G C USP54 Missense_Mutation p.S619R 0.28 tolerated(0.2) benign(0.101) TCGA-CG-4449-01 10 75567759 75567759 T C NDST2 Missense_Mutation p.N130D 0.24 tolerated(0.39) benign(0) TCGA-CG-4449-01 11 49598099 49598099 A C RP11-707M1.1 RNA 0.36 TCGA-CG-4449-01 11 61488300 61488300 G A DAGLA Missense_Mutation p.R82H 0.30 deleterious(0) probably_damaging(0.994) TCGA-CG-4449-01 11 62652974 62652974 C T SLC3A2 Missense_Mutation p.A448V 0.08 tolerated(0.16) benign(0.024) TCGA-CG-4449-01 11 6432549 6432549 G A APBB1 Missense_Mutation p.S10L 0.41 tolerated_low_confidence(0.1) possibly_damaging(0.776) TCGA-CG-4449-01 11 88780628 88780628 C T GRM5 Missense_Mutation p.R138H 0.19 tolerated(0.06) benign(0.017) TCGA-CG-4449-01 11 92086577 92086577 G A FAT3 Silent p.R433R 0.22 TCGA-CG-4449-01 12 52992799 52992799 A G KRT72 Missense_Mutation p.I175T 0.42 deleterious(0.02) benign(0.328) TCGA-CG-4449-01 12 53668761 53668761 C T ESPL1 Missense_Mutation p.A556V 0.08 deleterious(0.02) probably_damaging(0.937) TCGA-CG-4449-01 12 54383121 54383121 T G HOXC10 Missense_Mutation p.L307R 0.30 deleterious(0) probably_damaging(1) TCGA-CG-4449-01 12 60173407 60173407 G A SLC16A7 Missense_Mutation p.V462I 0.23 tolerated(0.44) benign(0.003) TCGA-CG-4449-01 12 65720710 65720710 G A MSRB3 Missense_Mutation p.E68K 0.23 deleterious(0) probably_damaging(0.999) TCGA-CG-4449-01 12 6923370 6923370 C A CD4 Missense_Mutation p.P93T 0.20 deleterious(0) probably_damaging(0.985) TCGA-CG-4449-01 12 8375060 8375060 G C FAM90A1 Silent p.L251L 0.08 TCGA-CG-4449-01 12 8988261 8988261 T C A2ML1 Silent p.Y214Y 0.35 TCGA-CG-4449-01 13 103468859 103468859 C G BIVM-ERCC5 Missense_Mutation p.P159R 0.31 deleterious_low_confidence(0.02) probably_damaging(0.972) TCGA-CG-4449-01 13 110838820 110838821 - G COL4A1 Frame_Shift_Ins p.G604Wfs*13 0.20 TCGA-CG-4449-01 13 29287281 29287281 G A SLC46A3 Missense_Mutation p.S199L 0.34 deleterious(0.04) possibly_damaging(0.82) TCGA-CG-4449-01 13 41766772 41766775 CTAG - KBTBD7 Frame_Shift_Del p.A540Gfs*43 0.29 TCGA-CG-4449-01 13 41947902 41947902 A T NAA16 Missense_Mutation p.Q762L 0.23 tolerated(0.31) benign(0.001) TCGA-CG-4449-01 14 22090682 22090682 G C TRAV1-1 Missense_Mutation p.Q96H 0.04 tolerated(0.21) benign(0.085) TCGA-CG-4449-01 14 22475891 22475891 G A TRAV19 Silent p.R8R 0.25 TCGA-CG-4449-01 14 24788315 24788315 C T ADCY4 Missense_Mutation p.R982H 0.25 deleterious(0) benign(0.003) TCGA-CG-4449-01 14 30095727 30095727 T C PRKD1 Silent p.E587E 0.32 TCGA-CG-4449-01 14 80328211 80328211 C T NRXN3 Silent p.S1030S 0.21 TCGA-CG-4449-01 15 24921084 24921084 G A NPAP1 Missense_Mutation p.A24T 0.35 tolerated_low_confidence(0.3) possibly_damaging(0.695) TCGA-CG-4449-01 15 53815461 53815461 C T WDR72 Silent p.V1069V 0.28 TCGA-CG-4449-01 16 67424253 67424254 CT - TPPP3 Frame_Shift_Del p.G120Cfs*21 0.29 TCGA-CG-4449-01 17 13400097 13400097 A G HS3ST3A1 Missense_Mutation p.M213T 0.13 deleterious(0) benign(0.398) TCGA-CG-4449-01 17 14248383 14248383 T C HS3ST3B1 Missense_Mutation p.M198T 0.43 deleterious(0) probably_damaging(0.92) TCGA-CG-4449-01 17 16525840 16525840 T G ZNF624 Missense_Mutation p.K787T 0.05 deleterious(0) probably_damaging(0.998) TCGA-CG-4449-01 17 32906083 32906083 T C C17orf102 Missense_Mutation p.T73A 0.10 tolerated(0.06) possibly_damaging(0.801) TCGA-CG-4449-01 17 41102638 41102638 T C AARSD1 Missense_Mutation p.Y404C 0.49 tolerated(0.1) benign(0.019) TCGA-CG-4449-01 17 41245963 41245963 G A BRCA1 Missense_Mutation p.P529S 0.45 tolerated(0.21) possibly_damaging(0.835) TCGA-CG-4449-01 17 58299833 58299833 G A USP32 Silent p.V562V 0.24 TCGA-CG-4449-01 17 72588276 72588276 T C C17orf77 Missense_Mutation p.C31R 0.23 tolerated_low_confidence(0.52) benign(0) TCGA-CG-4449-01 17 7577532 7577532 G A TP53 Missense_Mutation p.P250L 0.54 deleterious(0) probably_damaging(1) TCGA-CG-4449-01 18 10671476 10671476 A T PIEZO2 3'Flank 0.42 TCGA-CG-4449-01 18 21894248 21894248 G A OSBPL1A Missense_Mutation p.R312W 0.16 deleterious(0.01) possibly_damaging(0.884) TCGA-CG-4449-01 18 55362738 55362738 G C ATP8B1 Nonsense_Mutation p.S242* 0.05 TCGA-CG-4449-01 19 10129585 10129585 G A RDH8 Silent p.Q167Q 0.47 TCGA-CG-4449-01 19 13411396 13411396 A G CACNA1A Silent p.S749S 0.17 TCGA-CG-4449-01 19 15559049 15559049 G A WIZ Missense_Mutation p.P24S 0.05 deleterious_low_confidence(0) probably_damaging(0.932) TCGA-CG-4449-01 19 21558721 21558721 G A ZNF738 Missense_Mutation p.D92N 0.06 deleterious(0) benign(0.02) TCGA-CG-4449-01 19 21558722 21558722 A T ZNF738 Missense_Mutation p.D92V 0.06 deleterious(0.03) benign(0.011) TCGA-CG-4449-01 19 35250430 35250430 T A ZNF599 Nonsense_Mutation p.K426* 0.06 TCGA-CG-4449-01 19 55526287 55526287 G A GP6 Silent p.T342T 0.38 TCGA-CG-4449-01 1 107691262 107691262 T A NTNG1 Missense_Mutation p.V16E 0.22 deleterious(0) probably_damaging(0.929) TCGA-CG-4449-01 1 109342845 109342845 G A STXBP3 Missense_Mutation p.A485T 0.18 tolerated(0.11) benign(0.095) TCGA-CG-4449-01 1 152328248 152328248 C T FLG2 Missense_Mutation p.V672I 0.28 unknown(0) TCGA-CG-4449-01 1 158576420 158576420 C A OR10Z1 Silent p.S64S 0.27 TCGA-CG-4449-01 1 173833295 173833295 A G ZBTB37 5'Flank 0.35 TCGA-CG-4449-01 1 177250031 177250031 G C BRINP2 Missense_Mutation p.Q573H 0.21 tolerated(0.06) probably_damaging(0.993) TCGA-CG-4449-01 1 196197281 196197281 C G KCNT2 3'UTR 0.36 TCGA-CG-4449-01 1 198719669 198719669 G T PTPRC Nonsense_Mutation p.E1041* 0.19 TCGA-CG-4449-01 1 207110552 207110554 CAC - PIGR In_Frame_Del p.V311del 0.19 TCGA-CG-4449-01 1 207198408 207198408 C T C1orf116 Missense_Mutation p.S36N 0.12 deleterious(0) possibly_damaging(0.849) TCGA-CG-4449-01 1 226825434 226825434 C T ITPKB Silent p.R857R 0.08 TCGA-CG-4449-01 1 237774171 237774171 G A RYR2 Missense_Mutation p.R1598K 0.33 possibly_damaging(0.784) TCGA-CG-4449-01 1 242159615 242159615 G A MAP1LC3C Silent p.S98S 0.23 TCGA-CG-4449-01 1 243328999 243328999 C T CEP170 Missense_Mutation p.E755K 0.03 deleterious(0.04) benign(0.144) TCGA-CG-4449-01 1 41979398 41979398 C A HIVEP3 Missense_Mutation p.D1832Y 0.23 possibly_damaging(0.866) TCGA-CG-4449-01 1 44401761 44401761 G A ARTN Silent p.A27A 0.19 TCGA-CG-4449-01 1 60073530 60073530 T A FGGY Missense_Mutation p.M320K 0.06 deleterious(0) possibly_damaging(0.697) TCGA-CG-4449-01 1 63119745 63119745 C T DOCK7 Missense_Mutation p.R77Q 0.49 tolerated(0.48) benign(0.084) TCGA-CG-4449-01 1 67895811 67895811 G A SERBP1 Missense_Mutation p.A58V 0.45 deleterious(0.03) benign(0.295) TCGA-CG-4449-01 1 95609526 95609526 C A TMEM56 Missense_Mutation p.F23L 0.27 deleterious(0) probably_damaging(0.971) TCGA-CG-4449-01 20 3726571 3726571 G A HSPA12B Missense_Mutation p.E190K 0.29 deleterious(0.01) benign(0.016) TCGA-CG-4449-01 22 18209612 18209612 C T BCL2L13 Missense_Mutation p.S257L 0.27 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-CG-4449-01 22 18209747 18209747 C G BCL2L13 Missense_Mutation p.S302C 0.09 deleterious(0) probably_damaging(0.998) TCGA-CG-4449-01 22 25313668 25313668 A G SGSM1 Missense_Mutation p.D1046G 0.06 deleterious(0.01) benign(0.163) TCGA-CG-4449-01 22 29445281 29445281 G A ZNRF3 Missense_Mutation p.R371H 0.27 tolerated(0.23) benign(0.046) TCGA-CG-4449-01 2 102804325 102804325 G A IL1RL2 5'UTR 0.30 TCGA-CG-4449-01 2 168104460 168104460 T G XIRP2 Silent p.T2186T 0.24 TCGA-CG-4449-01 2 168107180 168107180 G A XIRP2 Missense_Mutation p.R3093H 0.27 benign(0.001) TCGA-CG-4449-01 2 197708744 197708744 G C PGAP1 Nonsense_Mutation p.S798* 0.29 TCGA-CG-4449-01 2 204000806 204000806 T A NBEAL1 Missense_Mutation p.I1378N 0.24 tolerated(0.19) benign(0.089) TCGA-CG-4449-01 2 242758315 242758315 G A NEU4 Missense_Mutation p.A479T 0.38 tolerated(0.67) benign(0.003) TCGA-CG-4449-01 2 32673875 32673876 - A BIRC6 Frame_Shift_Ins p.S1500Kfs*5 0.22 TCGA-CG-4449-01 2 74328640 74328640 G C TET3 Silent p.L1440L 0.22 TCGA-CG-4449-01 3 111312961 111312961 C G ZBED2 Missense_Mutation p.E30Q 0.06 deleterious_low_confidence(0.02) benign(0.31) TCGA-CG-4449-01 3 111659435 111659435 G A PHLDB2 Silent p.Q780Q 0.24 TCGA-CG-4449-01 3 113120574 113120574 C T WDR52 Missense_Mutation p.E395K 0.21 deleterious(0.02) possibly_damaging(0.877) TCGA-CG-4449-01 3 121445864 121445864 C T GOLGB1 Missense_Mutation p.E143K 0.28 benign(0.02) TCGA-CG-4449-01 3 186370130 186370130 A - FETUB Frame_Shift_Del p.N288Tfs*43 0.31 TCGA-CG-4449-01 3 38017246 38017246 G - CTDSPL Frame_Shift_Del p.A190Pfs*16 0.25 TCGA-CG-4449-01 3 49149979 49149987 AAAGCAGAG - USP19 In_Frame_Del p.L859_F861del 0.23 TCGA-CG-4449-01 3 52392752 52392752 C T DNAH1 Missense_Mutation p.T1422M 0.24 benign(0.296) TCGA-CG-4449-01 3 74351856 74351856 C G CNTN3 Missense_Mutation p.D591H 0.23 tolerated(0.07) possibly_damaging(0.828) TCGA-CG-4449-01 3 97869090 97869090 C G OR5H14 Silent p.P287P 0.31 TCGA-CG-4449-01 4 119059215 119059215 G A NDST3 Missense_Mutation p.G411S 0.41 tolerated(0.11) probably_damaging(0.967) TCGA-CG-4449-01 5 160067471 160067472 - A ATP10B Frame_Shift_Ins p.V333Cfs*11 0.29 TCGA-CG-4449-01 6 102247533 102247533 C T GRIK2 Missense_Mutation p.A321V 0.25 deleterious(0) benign(0.185) TCGA-CG-4449-01 6 138428360 138428360 C T PERP Missense_Mutation p.D40N 0.11 tolerated(0.27) benign(0.005) TCGA-CG-4449-01 6 28543037 28543037 C G SCAND3 Missense_Mutation p.R482T 0.23 tolerated_low_confidence(0.12) probably_damaging(0.966) TCGA-CG-4449-01 6 33263368 33263368 C A RGL2 Nonsense_Mutation p.E313* 0.13 TCGA-CG-4449-01 6 33652629 33652629 A G ITPR3 Missense_Mutation p.D1739G 0.08 deleterious(0) benign(0.15) TCGA-CG-4449-01 6 66063378 66063378 C T EYS Missense_Mutation p.E478K 0.30 tolerated(1) benign(0) TCGA-CG-4449-01 6 73952192 73952192 G A KHDC1 Missense_Mutation p.P90S 0.24 tolerated(0.17) probably_damaging(0.986) TCGA-CG-4449-01 6 84798909 84798909 C T MRAP2 Silent p.N109N 0.32 TCGA-CG-4449-01 7 121653684 121653684 T C PTPRZ1 Silent p.S1528S 0.16 TCGA-CG-4449-01 7 6370486 6370486 C T FAM220A Silent p.P100P 0.16 TCGA-CG-4449-01 8 135614852 135614852 G C ZFAT Missense_Mutation p.I370M 0.07 deleterious(0.02) possibly_damaging(0.759) TCGA-CG-4449-01 8 142229090 142229090 C G SLC45A4 Missense_Mutation p.D166H 0.24 tolerated(0.11) possibly_damaging(0.609) TCGA-CG-4449-01 8 145621891 145621891 G A CPSF1 Silent p.G916G 0.31 TCGA-CG-4449-01 8 42591793 42591793 T A CHRNB3 3'UTR 0.28 TCGA-CG-4449-01 8 642594 642594 G A ERICH1 Missense_Mutation p.P63L 0.33 tolerated(0.3) benign(0) TCGA-CG-4449-01 8 77767078 77767078 G A ZFHX4 Missense_Mutation p.E2641K 0.29 probably_damaging(0.98) TCGA-CG-4449-01 9 116346512 116346512 G A RGS3 Silent p.R940R 0.28 TCGA-CG-4449-01 9 117185721 117185721 A G DFNB31 Missense_Mutation p.I500T 0.16 deleterious(0.03) possibly_damaging(0.829) TCGA-CG-4449-01 9 84607898 84607898 T G SPATA31D1 Missense_Mutation p.F838C 0.29 deleterious(0) probably_damaging(0.993) TCGA-CG-4449-01 9 96214522 96214522 G A FAM120A Missense_Mutation p.V109I 0.69 tolerated(0.47) possibly_damaging(0.761) TCGA-CG-4449-01 X 105197150 105197150 C T NRK Silent p.C1547C 0.36 TCGA-CG-4449-01 X 53564520 53564520 C T HUWE1 Missense_Mutation p.R4045Q 0.69 unknown(0) TCGA-CG-4455-01 10 15714730 15714730 C T ITGA8 Missense_Mutation p.S232N 0.15 tolerated(0.38) benign(0.011) TCGA-CG-4455-01 10 16553208 16553208 G A PTER Missense_Mutation p.D335N 0.14 tolerated(0.16) benign(0.077) TCGA-CG-4455-01 10 16941012 16941012 G A CUBN Nonsense_Mutation p.Q2861* 0.15 TCGA-CG-4455-01 11 1016108 1016108 A G MUC6 Silent p.V2231V 0.24 TCGA-CG-4455-01 11 47182878 47182878 G C C11orf49 Intron 0.32 TCGA-CG-4455-01 11 5373214 5373214 T A OR51B6 Silent p.V159V 0.12 TCGA-CG-4455-01 11 58605807 58605807 T - GLYATL2 Frame_Shift_Del p.N38Tfs*9 0.24 TCGA-CG-4455-01 12 14659923 14659923 C T PLBD1 Missense_Mutation p.R439H 0.10 deleterious(0) probably_damaging(1) TCGA-CG-4455-01 12 51390641 51390641 T C SLC11A2 Missense_Mutation p.I293V 0.23 deleterious(0.05) benign(0.008) TCGA-CG-4455-01 13 37016312 37016312 A C CCNA1 Missense_Mutation p.E406A 0.19 deleterious(0.04) possibly_damaging(0.827) TCGA-CG-4455-01 13 50586534 50586534 G A TRIM13 Missense_Mutation p.R156H 0.11 tolerated(0.53) benign(0.009) TCGA-CG-4455-01 13 78492255 78492255 C T EDNRB Missense_Mutation p.V242I 0.04 tolerated(1) benign(0.007) TCGA-CG-4455-01 14 36096420 36096420 G - RALGAPA1 Frame_Shift_Del p.H1739Tfs*5 0.10 TCGA-CG-4455-01 14 94173133 94173133 G A UNC79 Silent p.S2420S 0.30 TCGA-CG-4455-01 14 94405616 94405616 G A ASB2 Silent p.A485A 0.14 TCGA-CG-4455-01 15 35196621 35196621 G A AQR Silent p.T639T 0.17 TCGA-CG-4455-01 17 33495164 33495164 G A UNC45B Silent p.L412L 0.14 TCGA-CG-4455-01 17 41001202 41001202 A T AOC2 Missense_Mutation p.Q563L 0.14 deleterious(0.01) benign(0.065) TCGA-CG-4455-01 17 72295860 72295860 G T DNAI2 Missense_Mutation p.C243F 0.12 tolerated(0.57) benign(0) TCGA-CG-4455-01 17 80019108 80019108 G A DUS1L Silent p.H273H 0.29 TCGA-CG-4455-01 18 13067827 13067827 T G CEP192 Intron 0.13 TCGA-CG-4455-01 18 40850588 40850588 G A SYT4 Silent p.Y332Y 0.06 TCGA-CG-4455-01 18 61460422 61460423 - T SERPINB7 Frame_Shift_Ins p.S85Ffs*2 0.16 TCGA-CG-4455-01 19 17883497 17883497 A G FCHO1 Missense_Mutation p.E246G 0.10 deleterious(0.03) benign(0.445) TCGA-CG-4455-01 19 8808873 8808873 G A ACTL9 Missense_Mutation p.T60I 0.18 tolerated(0.33) possibly_damaging(0.763) TCGA-CG-4455-01 1 1267882 1267882 T C TAS1R3 Missense_Mutation p.F324S 0.06 deleterious(0) probably_damaging(0.995) TCGA-CG-4455-01 1 156883511 156883511 G A PEAR1 Missense_Mutation p.S891N 0.23 deleterious(0.03) possibly_damaging(0.701) TCGA-CG-4455-01 1 19446105 19446105 C T UBR4 Silent p.Q3467Q 0.11 TCGA-CG-4455-01 1 19523680 19523680 G A UBR4 Missense_Mutation p.R325C 0.12 probably_damaging(0.997) TCGA-CG-4455-01 1 28906464 28906464 T C TRNAU1AP 3'Flank 0.07 TCGA-CG-4455-01 20 17597397 17597408 CTGGGGGCGCCT - RRBP1 In_Frame_Del p.E846_P849del 0.10 TCGA-CG-4455-01 20 30818669 30818669 C A POFUT1 Missense_Mutation p.F261L 0.24 tolerated(1) benign(0.042) TCGA-CG-4455-01 20 62187890 62187890 G A C20orf195 Missense_Mutation p.V292M 0.14 deleterious(0) probably_damaging(0.999) TCGA-CG-4455-01 2 116572421 116572421 G T DPP10 Missense_Mutation p.D589Y 0.12 deleterious(0.02) benign(0.236) TCGA-CG-4455-01 2 158958554 158958554 G A UPP2 Silent p.V50V 0.04 TCGA-CG-4455-01 2 174074513 174074513 G A MLTK Silent p.T267T 0.31 TCGA-CG-4455-01 2 219609922 219609922 C T TTLL4 Silent p.P584P 0.12 TCGA-CG-4455-01 3 101384055 101384055 T A ZBTB11 Missense_Mutation p.D459V 0.09 tolerated(0.37) benign(0.001) TCGA-CG-4455-01 4 9452104 9452104 A G DEFB131 Missense_Mutation p.N26S 0.07 tolerated(0.82) benign(0) TCGA-CG-4455-01 6 112029214 112029214 A G FYN Silent p.D118D 0.08 TCGA-CG-4455-01 6 15512493 15512493 C A JARID2 Missense_Mutation p.Q1003K 0.11 tolerated(0.43) benign(0.022) TCGA-CG-4455-01 6 30890739 30890739 C T VARS2 Missense_Mutation p.S754F 0.11 deleterious(0) probably_damaging(0.97) TCGA-CG-4455-01 7 100773794 100773794 G A SERPINE1 Missense_Mutation p.V122I 0.14 tolerated(0.08) benign(0.249) TCGA-CG-4455-01 7 156931954 156931954 C G UBE3C 5'UTR 0.33 TCGA-CG-4455-01 7 21939016 21939016 C T DNAH11 Missense_Mutation p.P4378L 0.13 probably_damaging(0.991) TCGA-CG-4455-01 7 50607687 50607687 G A DDC Missense_Mutation p.P81S 0.14 deleterious(0.01) probably_damaging(0.986) TCGA-CG-4455-01 7 78256458 78256458 G A MAGI2 Silent p.L172L 0.06 TCGA-CG-4455-01 7 82579972 82579972 T G PCLO Missense_Mutation p.K3311T 0.34 unknown(0) TCGA-CG-4455-01 7 87477182 87477182 C G SLC25A40 Missense_Mutation p.G148A 0.08 deleterious(0) probably_damaging(1) TCGA-CG-4455-01 7 89938590 89938590 T A C7orf63 Missense_Mutation p.L855H 0.11 tolerated(0.25) probably_damaging(0.994) TCGA-CG-4455-01 7 99117466 99117466 A G ZKSCAN5 Silent p.Q190Q 0.09 TCGA-CG-4455-01 8 125603445 125603445 G A MTSS1 Silent p.T80T 0.14 TCGA-CG-4455-01 8 98656725 98656725 G T MTDH 5'UTR 0.40 TCGA-CG-4455-01 9 138588519 138588519 C T SOHLH1 Silent p.T200T 0.35 TCGA-CG-4455-01 9 90500005 90500005 C T SPATA31E1 Silent p.T201T 0.11 TCGA-CG-4455-01 X 110391110 110391110 C T PAK3 Missense_Mutation p.T177I 0.17 deleterious(0.01) probably_damaging(0.936) TCGA-CG-4455-01 X 135496392 135496392 G T GPR112 Silent p.L3037L 0.49 TCGA-CG-4455-01 X 39932669 39932669 C A BCOR Nonsense_Mutation p.E644* 0.44 TCGA-CG-4460-01 10 102782103 102782103 G A PDZD7 Silent p.C194C 0.44 TCGA-CG-4460-01 10 103919661 103919661 A G NOLC1 Missense_Mutation p.S290G 0.33 deleterious_low_confidence(0) benign(0.153) TCGA-CG-4460-01 10 103922020 103922020 C T NOLC1 Silent p.S698S 0.57 TCGA-CG-4460-01 10 104416970 104416970 G A TRIM8 Silent p.P505P 0.20 TCGA-CG-4460-01 10 105178301 105178301 C T PDCD11 Silent p.H672H 0.58 TCGA-CG-4460-01 10 105331561 105331561 C T NEURL1 Missense_Mutation p.R211W 0.32 deleterious(0.01) probably_damaging(0.927) TCGA-CG-4460-01 10 112327514 112327514 C A SMC3 5'UTR 0.70 TCGA-CG-4460-01 10 11911605 11911605 C - PROSER2 Frame_Shift_Del p.R172Gfs*181 0.38 TCGA-CG-4460-01 10 1229037 1229037 G A ADARB2 3'UTR 0.33 TCGA-CG-4460-01 10 123970690 123970690 C T TACC2 Silent p.S2250S 0.59 TCGA-CG-4460-01 10 123996964 123996964 C T TACC2 Missense_Mutation p.R2728C 0.69 probably_damaging(0.998) TCGA-CG-4460-01 10 127442350 127442350 T C EDRF1 Missense_Mutation p.S1161P 0.30 tolerated(0.29) benign(0.009) TCGA-CG-4460-01 10 127697969 127697969 A - FANK1 Frame_Shift_Del p.K336Sfs*25 0.53 TCGA-CG-4460-01 10 1284257 1284257 G A ADARB2 Missense_Mutation p.A433V 0.26 deleterious(0) possibly_damaging(0.615) TCGA-CG-4460-01 10 129202588 129202589 - A DOCK1 Frame_Shift_Ins p.Q1321Tfs*6 0.39 TCGA-CG-4460-01 10 129910073 129910073 A T MKI67 Missense_Mutation p.V699E 0.71 tolerated(0.09) benign(0.037) TCGA-CG-4460-01 10 13213236 13213236 C T MCM10 Nonsense_Mutation p.R108* 0.36 TCGA-CG-4460-01 10 134161674 134161674 C T LRRC27 Missense_Mutation p.A247V 0.32 tolerated(0.07) benign(0.03) TCGA-CG-4460-01 10 16918974 16918974 C T CUBN Missense_Mutation p.A3010T 0.26 tolerated(0.68) benign(0.006) TCGA-CG-4460-01 10 18292301 18292301 C G SLC39A12 Intron 0.16 TCGA-CG-4460-01 10 18690886 18690886 G A CACNB2 Missense_Mutation p.D83N 0.38 deleterious(0.03) probably_damaging(1) TCGA-CG-4460-01 10 18834977 18834977 G A NSUN6 Missense_Mutation p.P432L 0.39 tolerated(0.26) benign(0.001) TCGA-CG-4460-01 10 23393123 23393123 A - MSRB2 Frame_Shift_Del p.K57Nfs*2 0.13 TCGA-CG-4460-01 10 23611427 23611427 G T C10orf67 Missense_Mutation p.Q124K 0.27 tolerated(0.18) benign(0.39) TCGA-CG-4460-01 10 24783528 24783528 G A KIAA1217 Silent p.A593A 0.33 TCGA-CG-4460-01 10 24834065 24834065 C T KIAA1217 Intron 0.34 TCGA-CG-4460-01 10 24880828 24880828 C T ARHGAP21 Silent p.T1330T 0.35 TCGA-CG-4460-01 10 25464598 25464598 C A GPR158 Silent p.A83A 0.13 TCGA-CG-4460-01 10 26508086 26508086 A T GAD2 Missense_Mutation p.D134V 0.17 deleterious(0) probably_damaging(0.995) TCGA-CG-4460-01 10 26508097 26508097 C T GAD2 Missense_Mutation p.P138S 0.15 deleterious(0) probably_damaging(0.998) TCGA-CG-4460-01 10 29760116 29760116 C - SVIL Frame_Shift_Del p.M1863Wfs*44 0.32 TCGA-CG-4460-01 10 323321 323321 G A DIP2C Nonsense_Mutation p.R1539* 0.39 TCGA-CG-4460-01 10 32762892 32762892 C A CCDC7 Intron 0.44 TCGA-CG-4460-01 10 33495128 33495128 T C NRP1 Intron 0.29 TCGA-CG-4460-01 10 34667035 34667035 C G PARD3 Splice_Site p.X467_splice 0.35 TCGA-CG-4460-01 10 38647366 38647366 T C HSD17B7P2 RNA 0.11 TCGA-CG-4460-01 10 43288456 43288456 C T BMS1 Missense_Mutation p.A318V 0.39 tolerated(0.07) benign(0.059) TCGA-CG-4460-01 10 44873717 44873717 G A AL137026.1 Missense_Mutation p.V11I 0.33 benign(0) TCGA-CG-4460-01 10 46121400 46121400 A - ZFAND4 Frame_Shift_Del p.L624Cfs*8 0.31 TCGA-CG-4460-01 10 46121631 46121631 C T ZFAND4 Missense_Mutation p.R547Q 0.26 deleterious(0.02) benign(0.067) TCGA-CG-4460-01 10 46961987 46961987 G A SYT15 Missense_Mutation p.R417C 0.18 tolerated(0.21) benign(0.001) TCGA-CG-4460-01 10 4877893 4877893 C T AKR1E2 Silent p.S117S 0.14 TCGA-CG-4460-01 10 49618095 49618095 G T MAPK8 Missense_Mutation p.D112Y 0.32 deleterious(0.03) probably_damaging(0.99) TCGA-CG-4460-01 10 50121776 50121777 - C LRRC18 Frame_Shift_Ins p.A142Gfs*12 0.24 TCGA-CG-4460-01 10 51580588 51580588 T C NCOA4 Silent p.R74R 0.36 TCGA-CG-4460-01 10 5260795 5260795 C T AKR1C4 3'UTR 0.36 TCGA-CG-4460-01 10 5416059 5416059 G A UCN3 Missense_Mutation p.V126I 0.34 deleterious(0.04) possibly_damaging(0.751) TCGA-CG-4460-01 10 5493826 5493826 C T NET1 Missense_Mutation p.R97C 0.41 deleterious(0) probably_damaging(0.959) TCGA-CG-4460-01 10 55913038 55913038 C T PCDH15 Missense_Mutation p.A536T 0.13 tolerated(0.23) possibly_damaging(0.7) TCGA-CG-4460-01 10 60936660 60936660 C A PHYHIPL Missense_Mutation p.P16H 0.35 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-CG-4460-01 10 6274980 6274980 C T PFKFB3 3'UTR 0.33 TCGA-CG-4460-01 10 64960289 64960289 T - JMJD1C Frame_Shift_Del p.G1742Efs*26 0.32 TCGA-CG-4460-01 10 64968499 64968499 T - JMJD1C Frame_Shift_Del p.N977Mfs*5 0.14 TCGA-CG-4460-01 10 70204681 70204681 C G DNA2 Missense_Mutation p.S492T 0.41 tolerated(0.15) benign(0.087) TCGA-CG-4460-01 10 70451193 70451193 C T TET1 Silent p.I2011I 0.38 TCGA-CG-4460-01 10 71921671 71921671 T A SAR1A Translation_Start_Site p.M1? 0.38 tolerated(0.06) benign(0.411) TCGA-CG-4460-01 10 72292382 72292382 C T PALD1 Silent p.H213H 0.32 TCGA-CG-4460-01 10 72468410 72468410 G A ADAMTS14 Missense_Mutation p.R249Q 0.42 deleterious(0.03) probably_damaging(0.999) TCGA-CG-4460-01 10 73521520 73521520 G A C10orf54 Missense_Mutation p.R116C 0.38 tolerated(0.07) possibly_damaging(0.75) TCGA-CG-4460-01 10 74813170 74813170 C T P4HA1 Silent p.A214A 0.36 TCGA-CG-4460-01 10 75051670 75051670 C A TTC18 Missense_Mutation p.A695S 0.31 deleterious(0.01) probably_damaging(0.994) TCGA-CG-4460-01 10 75406755 75406755 C A SYNPO2L Missense_Mutation p.Q885H 0.42 tolerated(0.23) benign(0.006) TCGA-CG-4460-01 10 75407677 75407677 G A SYNPO2L Missense_Mutation p.S578F 0.13 tolerated(0.08) probably_damaging(0.996) TCGA-CG-4460-01 10 75554008 75554008 G A ZSWIM8 Missense_Mutation p.R910Q 0.41 deleterious(0.02) possibly_damaging(0.901) TCGA-CG-4460-01 10 75849850 75849850 C T VCL Missense_Mutation p.R416W 0.30 deleterious(0) possibly_damaging(0.713) TCGA-CG-4460-01 10 75864999 75864999 C T VCL Silent p.S774S 0.40 TCGA-CG-4460-01 10 76735912 76735912 G A KAT6B Nonsense_Mutation p.W606* 0.37 TCGA-CG-4460-01 10 76854372 76854372 T C DUSP13 3'Flank 0.21 TCGA-CG-4460-01 10 7763613 7763613 C T ITIH2 Missense_Mutation p.A247V 0.31 deleterious(0.05) benign(0.256) TCGA-CG-4460-01 10 7866287 7866287 G A TAF3 Missense_Mutation p.R58Q 0.36 deleterious(0.01) probably_damaging(0.998) TCGA-CG-4460-01 10 79576791 79576791 G A DLG5 Missense_Mutation p.P1283L 0.33 deleterious(0) probably_damaging(0.999) TCGA-CG-4460-01 10 8055778 8055778 G A TAF3 Missense_Mutation p.D885N 0.33 tolerated(0.13) benign(0) TCGA-CG-4460-01 10 81113511 81113511 C T PPIF Silent p.D179D 0.41 TCGA-CG-4460-01 10 82033595 82033595 T C MAT1A Missense_Mutation p.Y377C 0.12 deleterious(0.01) probably_damaging(0.993) TCGA-CG-4460-01 10 82280575 82280575 C A TSPAN14 3'UTR 0.17 TCGA-CG-4460-01 10 85997427 85997427 G A LRIT1 Silent p.N46N 0.37 TCGA-CG-4460-01 10 86001144 86001144 G - LRIT1 Frame_Shift_Del p.Q18Rfs*26 0.27 TCGA-CG-4460-01 10 88753279 88753279 G A RP11-96C23.14 RNA 0.52 TCGA-CG-4460-01 10 90427430 90427430 T A LIPF Missense_Mutation p.N80K 0.63 tolerated(0.1) benign(0.083) TCGA-CG-4460-01 10 90697897 90697897 C - ACTA2 Frame_Shift_Del p.G304Afs*19 0.46 TCGA-CG-4460-01 10 93015 93015 G A TUBB8 Silent p.A439A 0.30 TCGA-CG-4460-01 10 95126257 95126257 C T MYOF Missense_Mutation p.R882H 0.24 tolerated(0.19) probably_damaging(0.983) TCGA-CG-4460-01 10 97816658 97816658 G A CCNJ Missense_Mutation p.E161K 0.62 deleterious(0.04) benign(0.425) TCGA-CG-4460-01 10 98287884 98287884 C T TM9SF3 Missense_Mutation p.G482D 0.30 deleterious(0) probably_damaging(0.999) TCGA-CG-4460-01 10 99329961 99329961 C T UBTD1 Missense_Mutation p.P122L 0.62 tolerated(0.23) probably_damaging(0.999) TCGA-CG-4460-01 10 99677301 99677301 G A CRTAC1 Missense_Mutation p.A224V 0.62 tolerated(0.39) benign(0.006) TCGA-CG-4460-01 11 100999400 100999400 G A PGR Silent p.C134C 0.39 TCGA-CG-4460-01 11 102195710 102195710 T C BIRC3 Missense_Mutation p.L157S 0.22 tolerated(0.17) benign(0.006) TCGA-CG-4460-01 11 102650238 102650238 T C MMP10 Missense_Mutation p.Y115C 0.18 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 11 102743616 102743616 C A MMP12 RNA 0.22 TCGA-CG-4460-01 11 103908686 103908686 C T DDI1 Missense_Mutation p.S379F 0.31 tolerated(0.06) benign(0.001) TCGA-CG-4460-01 11 10508902 10508902 C T AMPD3 Silent p.N319N 0.62 TCGA-CG-4460-01 11 107518326 107518326 C T ELMOD1 Nonsense_Mutation p.Q185* 0.46 TCGA-CG-4460-01 11 107535878 107535878 G A ELMOD1 Silent p.A320A 0.48 TCGA-CG-4460-01 11 108018227 108018227 T C ACAT1 3'UTR 0.32 TCGA-CG-4460-01 11 111612776 111612776 C A PPP2R1B Splice_Site p.X597_splice 0.44 TCGA-CG-4460-01 11 111941043 111941043 G A PIH1D2 Intron 0.38 TCGA-CG-4460-01 11 112050109 112050109 G A BCO2 Missense_Mutation p.R66Q 0.35 tolerated(0.59) benign(0.003) TCGA-CG-4460-01 11 116661100 116661100 C T APOA5 Missense_Mutation p.R282H 0.25 deleterious(0.05) benign(0.046) TCGA-CG-4460-01 11 117110519 117110519 T C RNF214 Silent p.T207T 0.18 TCGA-CG-4460-01 11 118130803 118130803 C T MPZL2 Missense_Mutation p.A184T 0.20 tolerated(0.4) benign(0.035) TCGA-CG-4460-01 11 118454555 118454555 G A ARCN1 Missense_Mutation p.R160H 0.22 deleterious(0.01) possibly_damaging(0.701) TCGA-CG-4460-01 11 118923438 118923438 G A HYOU1 Missense_Mutation p.R300W 0.40 tolerated(0.13) possibly_damaging(0.849) TCGA-CG-4460-01 11 118942339 118942339 G A VPS11 Missense_Mutation p.V223M 0.20 tolerated(0.22) benign(0.013) TCGA-CG-4460-01 11 118963179 118963179 C T HMBS Silent p.H239H 0.25 TCGA-CG-4460-01 11 119054480 119054480 G A NLRX1 3'UTR 0.12 TCGA-CG-4460-01 11 119058109 119058109 G A PDZD3 Missense_Mutation p.R154Q 0.27 deleterious(0.01) probably_damaging(0.992) TCGA-CG-4460-01 11 119213688 119213688 G - MFRP Frame_Shift_Del p.H384Tfs*94 0.42 TCGA-CG-4460-01 11 119549159 119549159 G A PVRL1 Silent p.G132G 0.13 TCGA-CG-4460-01 11 120200762 120200762 C T TMEM136 Silent p.C114C 0.41 TCGA-CG-4460-01 11 121458822 121458822 G A SORL1 Missense_Mutation p.R1303H 0.27 tolerated(0.1) benign(0.302) TCGA-CG-4460-01 11 123900949 123900949 C T OR10G8 Missense_Mutation p.S207L 0.26 tolerated(1) benign(0.021) TCGA-CG-4460-01 11 123901012 123901012 G A OR10G8 Missense_Mutation p.R228H 0.39 tolerated(0.19) benign(0.02) TCGA-CG-4460-01 11 123901055 123901055 C A OR10G8 Silent p.S242S 0.44 TCGA-CG-4460-01 11 124120777 124120777 G A OR8G1 Missense_Mutation p.A119T 0.46 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-CG-4460-01 11 124180456 124180456 G A OR8D1 Silent p.V69V 0.56 TCGA-CG-4460-01 11 124440462 124440462 C T OR8A1 Silent p.Y166Y 0.32 TCGA-CG-4460-01 11 124623849 124623849 G A ESAM Missense_Mutation p.A289V 0.18 deleterious(0) probably_damaging(0.998) TCGA-CG-4460-01 11 124755013 124755013 C - ROBO4 Frame_Shift_Del p.M976Cfs*29 0.44 TCGA-CG-4460-01 11 125325904 125325904 G A FEZ1 Missense_Mutation p.R256C 0.12 tolerated(0.08) probably_damaging(0.993) TCGA-CG-4460-01 11 126213223 126213223 G A DCPS Missense_Mutation p.A220T 0.41 deleterious(0) probably_damaging(0.992) TCGA-CG-4460-01 11 129800997 129800997 G A PRDM10 Missense_Mutation p.H482Y 0.19 deleterious(0.03) benign(0.201) TCGA-CG-4460-01 11 133790169 133790169 C T IGSF9B Missense_Mutation p.E1151K 0.47 deleterious_low_confidence(0.01) benign(0.163) TCGA-CG-4460-01 11 133806075 133806075 C T IGSF9B Missense_Mutation p.V232I 0.27 tolerated(0.15) benign(0.223) TCGA-CG-4460-01 11 134119775 134119777 CTT - THYN1 In_Frame_Del p.E110del 0.50 TCGA-CG-4460-01 11 134253993 134253993 G A B3GAT1 Missense_Mutation p.R68C 0.25 deleterious(0) possibly_damaging(0.794) TCGA-CG-4460-01 11 13435172 13435172 C T BTBD10 Missense_Mutation p.R238H 0.63 tolerated(0.17) benign(0.096) TCGA-CG-4460-01 11 14889180 14889180 T C PDE3B Silent p.A1005A 0.24 TCGA-CG-4460-01 11 16071378 16071379 - T SOX6 Frame_Shift_Ins p.T453Nfs*14 0.47 TCGA-CG-4460-01 11 17553007 17553007 G A USH1C Missense_Mutation p.R63W 0.62 deleterious(0) probably_damaging(0.998) TCGA-CG-4460-01 11 27371790 27371791 - T CCDC34 Intron 0.43 TCGA-CG-4460-01 11 35219744 35219744 T G CD44 Missense_Mutation p.S291R 0.52 deleterious(0) probably_damaging(0.944) TCGA-CG-4460-01 11 35229754 35229754 G A CD44 Splice_Site p.X506_splice 0.66 TCGA-CG-4460-01 11 36511366 36511366 T - TRAF6 3'UTR 0.30 TCGA-CG-4460-01 11 46818455 46818455 G A CKAP5 Silent p.A458A 0.58 TCGA-CG-4460-01 11 47732018 47732018 C T AGBL2 Missense_Mutation p.R48Q 0.59 tolerated_low_confidence(0.29) benign(0.001) TCGA-CG-4460-01 11 47801897 47801897 C T NUP160 Missense_Mutation p.A1407T 0.35 tolerated(0.53) benign(0.022) TCGA-CG-4460-01 11 55065032 55065032 T - TRIM51HP RNA 0.37 TCGA-CG-4460-01 11 55653610 55653610 A - TRIM51 Frame_Shift_Del p.M144Cfs*15 0.26 TCGA-CG-4460-01 11 56409526 56409526 T A OR5AP2 Silent p.A130A 0.13 TCGA-CG-4460-01 11 56409551 56409551 G C OR5AP2 Missense_Mutation p.A122G 0.16 deleterious(0.03) benign(0.41) TCGA-CG-4460-01 11 57004212 57004212 C T APLNR Silent p.T89T 0.18 TCGA-CG-4460-01 11 57077112 57077112 C T TNKS1BP1 Missense_Mutation p.G1025R 0.46 deleterious(0.03) benign(0.356) TCGA-CG-4460-01 11 57185284 57185284 C T SLC43A3 Missense_Mutation p.R203H 0.16 deleterious(0) probably_damaging(0.988) TCGA-CG-4460-01 11 57373534 57373534 G A SERPING1 Missense_Mutation p.S246N 0.24 tolerated(0.12) benign(0.02) TCGA-CG-4460-01 11 57573388 57573392 TATCA - CTNND1 Frame_Shift_Del p.Y588Sfs*38 0.30 TCGA-CG-4460-01 11 5809455 5809455 C T OR52N1 Missense_Mutation p.A198T 0.33 tolerated(0.34) probably_damaging(0.909) TCGA-CG-4460-01 11 58604560 58604560 G A GLYATL2 Missense_Mutation p.P135L 0.43 tolerated(0.57) benign(0) TCGA-CG-4460-01 11 58916321 58916321 A G FAM111A 5'UTR 0.32 TCGA-CG-4460-01 11 58920087 58920087 A - FAM111A Frame_Shift_Del p.M318* 0.41 TCGA-CG-4460-01 11 58972233 58972233 G A DTX4 Missense_Mutation p.V571I 0.18 deleterious(0) probably_damaging(0.929) TCGA-CG-4460-01 11 59224768 59224768 T - OR4D6 Frame_Shift_Del p.F114Sfs*4 0.24 TCGA-CG-4460-01 11 61079550 61079550 C T DDB1 Silent p.A692A 0.45 TCGA-CG-4460-01 11 61254449 61254449 C T PPP1R32 Silent p.S288S 0.22 TCGA-CG-4460-01 11 61404305 61404305 G A RPLP0P2 RNA 0.27 TCGA-CG-4460-01 11 61646251 61646251 G A FADS3 Silent p.H197H 0.17 TCGA-CG-4460-01 11 61732517 61732517 T - FTH1 Frame_Shift_Del p.N110Mfs*2 0.41 TCGA-CG-4460-01 11 62186576 62186576 C T SCGB1A1 Silent p.L3L 0.29 TCGA-CG-4460-01 11 62292852 62292852 C T AHNAK Missense_Mutation p.V3013I 0.18 benign(0.28) TCGA-CG-4460-01 11 62301276 62301276 C T AHNAK Missense_Mutation p.V205M 0.52 possibly_damaging(0.493) TCGA-CG-4460-01 11 6239226 6239226 G - FAM160A2 Frame_Shift_Del p.A545Pfs*131 0.35 TCGA-CG-4460-01 11 62455516 62455516 G A LRRN4CL Silent p.A155A 0.29 TCGA-CG-4460-01 11 63517468 63517468 G A RTN3 Missense_Mutation p.D846N 0.58 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 11 63586362 63586362 C T C11orf84 Silent p.F274F 0.29 TCGA-CG-4460-01 11 63965439 63965439 G A STIP1 Missense_Mutation p.C339Y 0.04 deleterious(0.01) probably_damaging(0.942) TCGA-CG-4460-01 11 64056781 64056781 C T GPR137 Missense_Mutation p.L458F 0.41 deleterious_low_confidence(0.01) benign(0.092) TCGA-CG-4460-01 11 64129375 64129375 G A RPS6KA4 Silent p.A269A 0.45 TCGA-CG-4460-01 11 64507150 64507150 C T RASGRP2 Silent p.P218P 0.15 TCGA-CG-4460-01 11 64534544 64534544 C T SF1 Missense_Mutation p.M595I 0.20 tolerated_low_confidence(0.2) unknown(0) TCGA-CG-4460-01 11 64597185 64597185 G A CDC42BPG Missense_Mutation p.A1242V 0.17 deleterious(0.04) possibly_damaging(0.559) TCGA-CG-4460-01 11 64597675 64597675 G A CDC42BPG Missense_Mutation p.R1120C 0.25 tolerated(0.05) possibly_damaging(0.806) TCGA-CG-4460-01 11 64602006 64602006 G A CDC42BPG Missense_Mutation p.S740L 0.36 deleterious(0.02) possibly_damaging(0.88) TCGA-CG-4460-01 11 64622105 64622105 G A EHD1 Silent p.D435D 0.26 TCGA-CG-4460-01 11 64662837 64662837 C T ATG2A Silent p.A1835A 0.18 TCGA-CG-4460-01 11 64665443 64665443 C T ATG2A Missense_Mutation p.R1621H 0.37 tolerated(0.61) benign(0.001) TCGA-CG-4460-01 11 64883015 64883015 C T TM7SF2 Silent p.R347R 0.17 TCGA-CG-4460-01 11 65347604 65347604 G A EHBP1L1 Missense_Mutation p.R122H 0.54 tolerated(0.12) benign(0.036) TCGA-CG-4460-01 11 65408617 65408617 C T SIPA1 Silent p.H75H 0.56 TCGA-CG-4460-01 11 65482089 65482089 C T KAT5 Missense_Mutation p.R272W 0.39 deleterious(0) probably_damaging(0.986) TCGA-CG-4460-01 11 65746292 65746292 C T SART1 Missense_Mutation p.T764M 0.21 deleterious(0) probably_damaging(0.996) TCGA-CG-4460-01 11 6591961 6591961 C T DNHD1 Nonsense_Mutation p.R4407* 0.57 TCGA-CG-4460-01 11 66032646 66032646 G A KLC2 Missense_Mutation p.R425H 0.22 tolerated(0.63) benign(0.001) TCGA-CG-4460-01 11 66243489 66243489 G A PELI3 Missense_Mutation p.V421I 0.36 tolerated(0.09) probably_damaging(0.984) TCGA-CG-4460-01 11 66620737 66620737 G A PC Missense_Mutation p.R496W 0.44 deleterious(0) probably_damaging(0.986) TCGA-CG-4460-01 11 66638798 66638798 C T PC Missense_Mutation p.A159T 0.44 deleterious(0) probably_damaging(0.971) TCGA-CG-4460-01 11 67059125 67059125 G T ANKRD13D Missense_Mutation p.R150L 0.29 deleterious(0.03) possibly_damaging(0.813) TCGA-CG-4460-01 11 67200859 67200859 A G RPS6KB2 Missense_Mutation p.R283G 0.41 deleterious(0) benign(0.361) TCGA-CG-4460-01 11 67200902 67200902 G A RPS6KB2 Missense_Mutation p.R297Q 0.42 tolerated(0.67) benign(0.187) TCGA-CG-4460-01 11 67353933 67353933 C T GSTP1 Missense_Mutation p.A173V 0.16 deleterious(0.01) benign(0.089) TCGA-CG-4460-01 11 678719 678719 C T DEAF1 Silent p.A410A 0.57 TCGA-CG-4460-01 11 68177535 68177535 G A LRP5 Missense_Mutation p.G749R 0.51 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 11 68183972 68183972 C T LRP5 Nonsense_Mutation p.R1002* 0.22 TCGA-CG-4460-01 11 68216420 68216420 C A LRP5 Missense_Mutation p.P1577H 0.36 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 11 68517738 68517738 C T MTL5 Missense_Mutation p.A131T 0.79 deleterious(0.02) benign(0.036) TCGA-CG-4460-01 11 70331846 70331846 T C SHANK2 Missense_Mutation p.T1519A 0.30 deleterious(0.04) benign(0.217) TCGA-CG-4460-01 11 70332491 70332491 T C SHANK2 Missense_Mutation p.M1304V 0.21 tolerated(1) benign(0) TCGA-CG-4460-01 11 72470300 72470300 C T STARD10 Missense_Mutation p.A112T 0.39 tolerated(0.08) possibly_damaging(0.701) TCGA-CG-4460-01 11 73020921 73020921 G - ARHGEF17 Frame_Shift_Del p.G414Afs*33 0.26 TCGA-CG-4460-01 11 73021101 73021101 C T ARHGEF17 Missense_Mutation p.T473M 0.17 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-CG-4460-01 11 77961288 77961301 GGTTTGACACAGGG - GAB2 Frame_Shift_Del p.P175Hfs*45 0.47 TCGA-CG-4460-01 11 812818 812818 A C RPLP2 Silent p.G110G 0.55 TCGA-CG-4460-01 11 86663540 86663541 - A FZD4 Intron 0.40 TCGA-CG-4460-01 11 87006867 87006867 T C TMEM135 Splice_Site p.X184_splice 0.23 TCGA-CG-4460-01 11 8959399 8959399 G A ASCL3 Nonsense_Mutation p.Q104* 0.62 TCGA-CG-4460-01 11 92534487 92534487 C T FAT3 Missense_Mutation p.R2770C 0.21 possibly_damaging(0.856) TCGA-CG-4460-01 11 94113925 94113925 C T GPR83 Missense_Mutation p.R221H 0.28 deleterious(0.03) possibly_damaging(0.666) TCGA-CG-4460-01 11 94731569 94731569 G A KDM4D Missense_Mutation p.V345M 0.22 tolerated(0.07) benign(0.285) TCGA-CG-4460-01 11 9500019 9500019 G A ZNF143 Silent p.P152P 0.54 TCGA-CG-4460-01 12 100452762 100452762 G A UHRF1BP1L Missense_Mutation p.R765W 0.42 deleterious(0) probably_damaging(0.955) TCGA-CG-4460-01 12 101774925 101774925 G T UTP20 Missense_Mutation p.S2531I 0.30 tolerated(0.11) benign(0.275) TCGA-CG-4460-01 12 102179952 102179952 G A GNPTAB Missense_Mutation p.P137S 0.47 tolerated(0.12) benign(0.253) TCGA-CG-4460-01 12 103260410 103260410 C T PAH Missense_Mutation p.R158Q 0.36 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 12 104335416 104335416 C T HSP90B1 Missense_Mutation p.R414C 0.17 deleterious(0) probably_damaging(0.991) TCGA-CG-4460-01 12 105388285 105388285 G A C12orf45 Silent p.S123S 0.35 TCGA-CG-4460-01 12 106853057 106853057 T G POLR3B Silent p.L827L 0.38 TCGA-CG-4460-01 12 10865878 10865878 G A YBX3 Missense_Mutation p.R169C 0.25 deleterious(0.01) benign(0.013) TCGA-CG-4460-01 12 108685895 108685895 A G CMKLR1 Missense_Mutation p.L282P 0.35 deleterious(0) probably_damaging(0.996) TCGA-CG-4460-01 12 109181948 109181948 G A SSH1 Missense_Mutation p.T989M 0.34 deleterious_low_confidence(0.02) probably_damaging(0.915) TCGA-CG-4460-01 12 109182915 109182915 G A SSH1 Nonsense_Mutation p.R667* 0.30 TCGA-CG-4460-01 12 109278977 109278977 G A DAO Splice_Site p.X65_splice 0.38 TCGA-CG-4460-01 12 109332674 109332674 C T SVOP Missense_Mutation p.A211T 0.34 tolerated(0.41) benign(0.006) TCGA-CG-4460-01 12 10959062 10959062 T C TAS2R8 Missense_Mutation p.H173R 0.22 tolerated(0.83) benign(0.017) TCGA-CG-4460-01 12 109924288 109924288 T A UBE3B Missense_Mutation p.S119T 0.33 tolerated(0.15) benign(0.189) TCGA-CG-4460-01 12 110371863 110371863 G A GIT2 Silent p.H677H 0.38 TCGA-CG-4460-01 12 110765359 110765359 G A ATP2A2 Missense_Mutation p.G211D 0.14 deleterious(0) probably_damaging(0.991) TCGA-CG-4460-01 12 11139470 11139470 A - TAS2R50 5'UTR 0.11 TCGA-CG-4460-01 12 111923563 111923566 AAAC - ATXN2 Frame_Shift_Del p.C963Lfs*5 0.38 TCGA-CG-4460-01 12 111953972 111953972 C T ATXN2 Missense_Mutation p.R614H 0.41 probably_damaging(0.998) TCGA-CG-4460-01 12 112528572 112528572 A C NAA25 Missense_Mutation p.S81A 0.42 deleterious(0.01) possibly_damaging(0.764) TCGA-CG-4460-01 12 113328684 113328684 C T RPH3A Missense_Mutation p.R551C 0.24 deleterious(0) probably_damaging(0.991) TCGA-CG-4460-01 12 113354353 113354353 C T OAS1 Silent p.L232L 0.28 TCGA-CG-4460-01 12 113405786 113405786 G A OAS3 Missense_Mutation p.G971R 0.30 deleterious(0) probably_damaging(0.919) TCGA-CG-4460-01 12 113531347 113531347 T C DTX1 Missense_Mutation p.M336T 0.21 deleterious(0.01) benign(0.045) TCGA-CG-4460-01 12 113603449 113603449 C T DDX54 Silent p.A573A 0.33 TCGA-CG-4460-01 12 113633672 113633672 G A IQCD Missense_Mutation p.A251V 0.43 tolerated(0.28) benign(0) TCGA-CG-4460-01 12 113733834 113733834 G A TPCN1 Missense_Mutation p.A874T 0.45 tolerated(0.74) unknown(0) TCGA-CG-4460-01 12 116399182 116399182 G A MED13L Silent p.N2174N 0.12 TCGA-CG-4460-01 12 116429759 116429759 G A MED13L Silent p.N1000N 0.47 TCGA-CG-4460-01 12 117584029 117584029 G A FBXO21 Missense_Mutation p.R584C 0.39 deleterious(0) probably_damaging(0.995) TCGA-CG-4460-01 12 117723956 117723956 G A NOS1 Missense_Mutation p.R415W 0.33 deleterious(0) probably_damaging(0.999) TCGA-CG-4460-01 12 120156546 120156546 G T CIT Missense_Mutation p.L1321I 0.40 tolerated(0.07) possibly_damaging(0.729) TCGA-CG-4460-01 12 120536951 120536951 G A RAB35 Missense_Mutation p.R79W 0.36 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 12 120784005 120784005 G A MSI1 Missense_Mutation p.S327L 0.40 deleterious_low_confidence(0) benign(0.047) TCGA-CG-4460-01 12 121442280 121442280 G A C12orf43 Silent p.D155D 0.39 TCGA-CG-4460-01 12 123345518 123345521 CAGT - HIP1R Frame_Shift_Del p.V942Mfs*34 0.22 TCGA-CG-4460-01 12 123351700 123351700 C T VPS37B Missense_Mutation p.R274Q 0.42 tolerated(0.14) probably_damaging(0.968) TCGA-CG-4460-01 12 123463354 123463354 C T OGFOD2 Missense_Mutation p.R136C 0.37 deleterious(0.01) possibly_damaging(0.764) TCGA-CG-4460-01 12 123950395 123950395 G A SNRNP35 Missense_Mutation p.R108H 0.19 tolerated(0.09) possibly_damaging(0.747) TCGA-CG-4460-01 12 125398244 125398244 T A UBC Missense_Mutation p.N25I 0.19 deleterious(0) benign(0.401) TCGA-CG-4460-01 12 125438714 125438714 G A DHX37 Missense_Mutation p.R833W 0.26 deleterious(0) probably_damaging(0.987) TCGA-CG-4460-01 12 130184704 130184705 - G TMEM132D Frame_Shift_Ins p.T207Hfs*29 0.22 TCGA-CG-4460-01 12 130926716 130926716 G A RIMBP2 Missense_Mutation p.S377L 0.42 deleterious(0) probably_damaging(0.999) TCGA-CG-4460-01 12 132238955 132238955 C T SFSWAP Silent p.D455D 0.48 TCGA-CG-4460-01 12 132262751 132262751 A - SFSWAP Frame_Shift_Del p.R764Dfs*59 0.23 TCGA-CG-4460-01 12 132281733 132281733 G A SFSWAP Missense_Mutation p.E901K 0.34 tolerated_low_confidence(0.07) unknown(0) TCGA-CG-4460-01 12 13229019 13229019 G A KIAA1467 Silent p.A528A 0.56 TCGA-CG-4460-01 12 132326280 132326280 C T MMP17 Missense_Mutation p.P273L 0.34 deleterious(0) probably_damaging(0.999) TCGA-CG-4460-01 12 132329675 132329675 C T MMP17 Silent p.D327D 0.31 TCGA-CG-4460-01 12 132399752 132399752 C T ULK1 Missense_Mutation p.R500W 0.19 deleterious(0) probably_damaging(0.997) TCGA-CG-4460-01 12 132402081 132402081 C T ULK1 Missense_Mutation p.R770C 0.22 deleterious(0.05) possibly_damaging(0.77) TCGA-CG-4460-01 12 133291446 133291446 G A PGAM5 Missense_Mutation p.R65Q 0.70 deleterious(0.02) benign(0.426) TCGA-CG-4460-01 12 133331277 133331277 G A ANKLE2 Silent p.D208D 0.59 TCGA-CG-4460-01 12 13715904 13715904 G A GRIN2B Missense_Mutation p.A1423V 0.29 tolerated(0.07) benign(0.131) TCGA-CG-4460-01 12 14589054 14589054 C T ATF7IP Nonsense_Mutation p.R554* 0.23 TCGA-CG-4460-01 12 14949857 14949857 G A WBP11 Missense_Mutation p.R91C 0.11 deleterious(0) unknown(0) TCGA-CG-4460-01 12 21644581 21644581 G A RECQL Missense_Mutation p.T29M 0.24 tolerated(0.12) benign(0.003) TCGA-CG-4460-01 12 21661406 21661406 T - GOLT1B Frame_Shift_Del p.L72Wfs*6 0.27 TCGA-CG-4460-01 12 21926413 21926413 C T KCNJ8 Silent p.A46A 0.12 TCGA-CG-4460-01 12 21926484 21926484 G A KCNJ8 Missense_Mutation p.R23C 0.58 deleterious(0) benign(0.412) TCGA-CG-4460-01 12 24736562 24736562 A - LINC00477 RNA 0.24 TCGA-CG-4460-01 12 248347 248347 C T IQSEC3 Silent p.S606S 0.44 TCGA-CG-4460-01 12 25232353 25232353 A G LRMP Silent p.L31L 0.14 TCGA-CG-4460-01 12 26551894 26551894 A - ITPR2 Frame_Shift_Del p.F2537Lfs*22 0.21 TCGA-CG-4460-01 12 26634090 26634090 G A ITPR2 Nonsense_Mutation p.R2033* 0.23 TCGA-CG-4460-01 12 27450697 27450697 A G STK38L Missense_Mutation p.N15S 0.16 tolerated(0.69) benign(0) TCGA-CG-4460-01 12 31244773 31244773 G A DDX11 Missense_Mutation p.G404S 0.07 tolerated(0.78) benign(0.05) TCGA-CG-4460-01 12 3131115 3131115 A - TEAD4 Frame_Shift_Del p.K278Rfs*19 0.15 TCGA-CG-4460-01 12 32893374 32893374 G A DNM1L Missense_Mutation p.R639Q 0.25 deleterious(0) probably_damaging(0.988) TCGA-CG-4460-01 12 33532867 33532867 C T SYT10 Missense_Mutation p.C467Y 0.36 deleterious(0) probably_damaging(0.981) TCGA-CG-4460-01 12 3938135 3938135 T G PARP11 Missense_Mutation p.N70T 0.25 deleterious(0.02) probably_damaging(0.946) TCGA-CG-4460-01 12 40044126 40044126 G A C12orf40 Missense_Mutation p.R219Q 0.33 tolerated(1) benign(0) TCGA-CG-4460-01 12 41422874 41422874 A C CNTN1 Silent p.R945R 0.36 TCGA-CG-4460-01 12 422354 422354 C T KDM5A Silent p.R968R 0.31 TCGA-CG-4460-01 12 44142360 44142361 - A PUS7L Frame_Shift_Ins p.L321Ffs*13 0.26 TCGA-CG-4460-01 12 45816814 45816814 C T ANO6 Missense_Mutation p.A853V 0.42 deleterious(0) possibly_damaging(0.794) TCGA-CG-4460-01 12 463370 463370 G A KDM5A Missense_Mutation p.R301W 0.27 deleterious(0) probably_damaging(0.989) TCGA-CG-4460-01 12 47170743 47170743 G A SLC38A4 Missense_Mutation p.T373M 0.37 tolerated(0.24) benign(0.04) TCGA-CG-4460-01 12 48152200 48152200 G C RAPGEF3 Intron 0.16 TCGA-CG-4460-01 12 48393747 48393747 C T COL2A1 Missense_Mutation p.G83R 0.28 unknown(0) TCGA-CG-4460-01 12 48440801 48440801 A G SENP1 Missense_Mutation p.F579S 0.21 deleterious(0) probably_damaging(0.999) TCGA-CG-4460-01 12 48529151 48529151 C A PFKM Silent p.A378A 0.28 TCGA-CG-4460-01 12 49177237 49177237 G A ADCY6 5'UTR 0.38 TCGA-CG-4460-01 12 49220151 49220151 G A CACNB3 Silent p.A248A 0.24 TCGA-CG-4460-01 12 49426113 49426115 AGA - KMT2D In_Frame_Del p.S4125del 0.49 TCGA-CG-4460-01 12 49434005 49434005 G - KMT2D Frame_Shift_Del p.N2517Ifs*26 0.39 TCGA-CG-4460-01 12 49434492 49434492 G - KMT2D Frame_Shift_Del p.P2354Lfs*30 0.26 TCGA-CG-4460-01 12 49958367 49958367 C T MCRS1 Missense_Mutation p.D165N 0.48 tolerated(0.09) possibly_damaging(0.742) TCGA-CG-4460-01 12 50186646 50186646 G T NCKAP5L Missense_Mutation p.P1155Q 0.45 tolerated(0.08) benign(0.021) TCGA-CG-4460-01 12 50232398 50232398 T G BCDIN3D Missense_Mutation p.K212T 0.37 deleterious(0) possibly_damaging(0.869) TCGA-CG-4460-01 12 51675181 51675181 C A BIN2 3'UTR 0.31 TCGA-CG-4460-01 12 52629114 52629114 G A KRT7 Missense_Mutation p.R167Q 0.32 tolerated(0.09) benign(0.057) TCGA-CG-4460-01 12 52757945 52757945 G A KRT85 Silent p.D231D 0.28 TCGA-CG-4460-01 12 52981619 52981619 G A KRT72 Missense_Mutation p.T369M 0.38 tolerated(0.08) benign(0.064) TCGA-CG-4460-01 12 53449006 53449006 C T TENC1 Missense_Mutation p.R197C 0.33 deleterious(0) probably_damaging(0.91) TCGA-CG-4460-01 12 53452903 53452903 C - TENC1 Frame_Shift_Del p.P505Rfs*25 0.35 TCGA-CG-4460-01 12 53453017 53453017 C T TENC1 Missense_Mutation p.P541L 0.43 tolerated(0.1) probably_damaging(1) TCGA-CG-4460-01 12 53647601 53647601 A G MFSD5 Missense_Mutation p.M435V 0.41 tolerated(0.58) benign(0.041) TCGA-CG-4460-01 12 53878889 53878889 C T MAP3K12 Missense_Mutation p.V364M 0.30 deleterious(0.03) possibly_damaging(0.686) TCGA-CG-4460-01 12 54576089 54576089 C G SMUG1 Missense_Mutation p.V202L 0.30 tolerated(0.13) possibly_damaging(0.818) TCGA-CG-4460-01 12 54757083 54757083 T C GPR84 Missense_Mutation p.I185V 0.29 tolerated(0.34) benign(0.044) TCGA-CG-4460-01 12 54799470 54799470 C T ITGA5 Missense_Mutation p.A332T 0.12 tolerated(0.32) possibly_damaging(0.645) TCGA-CG-4460-01 12 56514975 56514975 G A ZC3H10 Missense_Mutation p.R210Q 0.32 tolerated(0.09) possibly_damaging(0.886) TCGA-CG-4460-01 12 56565506 56565506 G A SMARCC2 Silent p.V683V 0.30 TCGA-CG-4460-01 12 56572248 56572248 A G SMARCC2 Missense_Mutation p.V417A 0.28 tolerated(0.07) benign(0.153) TCGA-CG-4460-01 12 56572298 56572298 C T SMARCC2 Silent p.T400T 0.29 TCGA-CG-4460-01 12 56639313 56639313 T C ANKRD52 Missense_Mutation p.D751G 0.11 deleterious(0) probably_damaging(0.999) TCGA-CG-4460-01 12 5674753 5674753 C T ANO2 Missense_Mutation p.A900T 0.67 deleterious(0) possibly_damaging(0.858) TCGA-CG-4460-01 12 56750261 56750261 C T STAT2 Missense_Mutation p.R32Q 0.39 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 12 57032994 57032994 C T ATP5B Missense_Mutation p.R462H 0.41 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-CG-4460-01 12 57486315 57486315 C T NAB2 Missense_Mutation p.R348C 0.41 deleterious(0) probably_damaging(0.998) TCGA-CG-4460-01 12 57587452 57587452 C T LRP1 Silent p.D2596D 0.22 TCGA-CG-4460-01 12 57601868 57601868 C T LRP1 Silent p.A3969A 0.28 TCGA-CG-4460-01 12 57626076 57626076 G A SHMT2 Splice_Site p.X198_splice 0.43 TCGA-CG-4460-01 12 57868256 57868256 C T ARHGAP9 Missense_Mutation p.R578H 0.42 deleterious(0) probably_damaging(0.999) TCGA-CG-4460-01 12 57910804 57910804 C A DDIT3 Missense_Mutation p.G123W 0.18 deleterious(0.03) possibly_damaging(0.852) TCGA-CG-4460-01 12 57970115 57970115 C T KIF5A Missense_Mutation p.R718W 0.26 deleterious(0) probably_damaging(0.999) TCGA-CG-4460-01 12 57971834 57971834 G A KIF5A Missense_Mutation p.V802I 0.18 tolerated(0.12) probably_damaging(0.991) TCGA-CG-4460-01 12 63541204 63541204 T C AVPR1A Missense_Mutation p.T398A 0.35 tolerated(0.95) benign(0.043) TCGA-CG-4460-01 12 64521663 64521663 C - SRGAP1 Frame_Shift_Del p.P856Lfs*3 0.41 TCGA-CG-4460-01 12 6457297 6457297 C T SCNN1A Silent p.L643L 0.11 TCGA-CG-4460-01 12 64587771 64587771 G A C12orf66 Missense_Mutation p.R397C 0.42 tolerated(0.12) benign(0.271) TCGA-CG-4460-01 12 64588374 64588374 G C C12orf66 Missense_Mutation p.H196D 0.14 deleterious(0.03) possibly_damaging(0.701) TCGA-CG-4460-01 12 6473005 6473007 GTC - SCNN1A Intron 0.40 TCGA-CG-4460-01 12 6619670 6619670 T C NCAPD2 Intron 0.28 TCGA-CG-4460-01 12 6619909 6619909 G A NCAPD2 Missense_Mutation p.R126H 0.50 tolerated(0.13) benign(0.022) TCGA-CG-4460-01 12 66610954 66610954 A - IRAK3 Frame_Shift_Del p.M200Cfs*26 0.18 TCGA-CG-4460-01 12 6709063 6709063 C T CHD4 Missense_Mutation p.R453Q 0.26 tolerated(0.16) possibly_damaging(0.857) TCGA-CG-4460-01 12 69222698 69222698 C T MDM2 Missense_Mutation p.T224M 0.32 tolerated(0.07) probably_damaging(0.997) TCGA-CG-4460-01 12 6933720 6933721 - G GPR162 Frame_Shift_Ins p.G222Wfs*19 0.16 TCGA-CG-4460-01 12 6978285 6978285 G A TPI1 Missense_Mutation p.G125R 0.13 deleterious(0.02) possibly_damaging(0.639) TCGA-CG-4460-01 12 7045189 7045189 C - ATN1 Frame_Shift_Del p.P255Hfs*43 0.24 TCGA-CG-4460-01 12 7045700 7045700 C - ATN1 Frame_Shift_Del p.K426Sfs*27 0.48 TCGA-CG-4460-01 12 72312239 72312239 G A TBC1D15 Missense_Mutation p.D521N 0.13 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 12 7480936 7480936 C T ACSM4 Silent p.N570N 0.44 TCGA-CG-4460-01 12 7527057 7527057 G A CD163L1 Silent p.D1130D 0.28 TCGA-CG-4460-01 12 7527911 7527911 A G CD163L1 Silent p.C989C 0.10 TCGA-CG-4460-01 12 76442093 76442093 A - NAP1L1 3'UTR 0.39 TCGA-CG-4460-01 12 8375278 8375278 C T FAM90A1 Missense_Mutation p.V179I 0.47 tolerated(0.46) benign(0.003) TCGA-CG-4460-01 12 88912486 88912486 T G KITLG Missense_Mutation p.E117D 0.24 tolerated(0.58) benign(0.001) TCGA-CG-4460-01 12 9346768 9346768 C T PZP Missense_Mutation p.A387T 0.22 tolerated(0.43) benign(0.198) TCGA-CG-4460-01 12 9354947 9354947 C T PZP Missense_Mutation p.V150M 0.37 tolerated(0.22) benign(0.081) TCGA-CG-4460-01 12 95650969 95650969 T - VEZT Frame_Shift_Del p.S74Lfs*38 0.31 TCGA-CG-4460-01 13 101287179 101287179 G A TMTC4 Silent p.A462A 0.40 TCGA-CG-4460-01 13 103449325 103449325 C A KDELC1 Missense_Mutation p.V73L 0.35 tolerated(0.07) benign(0.195) TCGA-CG-4460-01 13 107822751 107822751 C T FAM155A 3'UTR 0.24 TCGA-CG-4460-01 13 111175897 111175897 C T RAB20 3'UTR 0.31 TCGA-CG-4460-01 13 111935585 111935585 G A ARHGEF7 Missense_Mutation p.G630S 0.42 tolerated(0.19) probably_damaging(0.997) TCGA-CG-4460-01 13 113213653 113213653 G A TUBGCP3 Missense_Mutation p.R105C 0.37 deleterious(0.01) possibly_damaging(0.582) TCGA-CG-4460-01 13 114113678 114113678 G T DCUN1D2 Missense_Mutation p.L217M 0.37 deleterious(0) probably_damaging(0.998) TCGA-CG-4460-01 13 114322049 114322049 C - GRK1 Frame_Shift_Del p.Q118Rfs*13 0.36 TCGA-CG-4460-01 13 114748647 114748647 C T RASA3 3'UTR 0.50 TCGA-CG-4460-01 13 115091245 115091245 C T CHAMP1 Missense_Mutation p.A643V 0.34 tolerated(0.09) benign(0.003) TCGA-CG-4460-01 13 20216355 20216355 A G MPHOSPH8 Missense_Mutation p.E105G 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.61) TCGA-CG-4460-01 13 20426165 20426165 T A ZMYM5 Missense_Mutation p.E52D 0.48 deleterious_low_confidence(0.02) benign(0.124) TCGA-CG-4460-01 13 20567633 20567633 C T ZMYM2 Nonsense_Mutation p.R141* 0.43 TCGA-CG-4460-01 13 21746558 21746558 T C SKA3 Missense_Mutation p.E84G 0.50 deleterious(0) benign(0.302) TCGA-CG-4460-01 13 22255181 22255181 G A FGF9 Missense_Mutation p.G93D 0.20 deleterious(0) probably_damaging(0.972) TCGA-CG-4460-01 13 23909222 23909222 T - SACS Frame_Shift_Del p.K2931Nfs*22 0.16 TCGA-CG-4460-01 13 25017846 25017846 C T PARP4 Missense_Mutation p.R1130Q 0.41 deleterious(0.02) possibly_damaging(0.588) TCGA-CG-4460-01 13 25362211 25362211 A - RNF17 Frame_Shift_Del p.N235Ifs*3 0.42 TCGA-CG-4460-01 13 25745465 25745465 G A AMER2 Missense_Mutation p.T98M 0.47 tolerated(0.23) possibly_damaging(0.562) TCGA-CG-4460-01 13 27256954 27256954 G A WASF3 Silent p.P398P 0.43 TCGA-CG-4460-01 13 27690720 27690720 G A USP12 Missense_Mutation p.S21L 0.50 deleterious(0) benign(0.279) TCGA-CG-4460-01 13 32758750 32758750 G A FRY Missense_Mutation p.R1023Q 0.55 deleterious(0.03) probably_damaging(0.929) TCGA-CG-4460-01 13 32808830 32808830 G A FRY Missense_Mutation p.A1883T 0.54 tolerated(0.38) benign(0.093) TCGA-CG-4460-01 13 33273992 33273992 G A PDS5B Missense_Mutation p.A576T 0.36 deleterious(0.02) benign(0.437) TCGA-CG-4460-01 13 33704015 33704015 G A STARD13 Nonsense_Mutation p.R267* 0.45 TCGA-CG-4460-01 13 36700037 36700037 G A DCLK1 Missense_Mutation p.R80W 0.20 deleterious(0) unknown(0) TCGA-CG-4460-01 13 37453851 37453851 C T SMAD9 5'UTR 0.36 TCGA-CG-4460-01 13 39425239 39425239 G T FREM2 Missense_Mutation p.A2246S 0.22 tolerated(0.18) possibly_damaging(0.76) TCGA-CG-4460-01 13 45781604 45781604 G A GTF2F2 Missense_Mutation p.R117Q 0.25 deleterious(0) benign(0.42) TCGA-CG-4460-01 13 46538103 46538103 C - ZC3H13 Frame_Shift_Del p.A1517Lfs*4 0.21 TCGA-CG-4460-01 13 48936983 48936983 C T RB1 Nonsense_Mutation p.R251* 0.44 TCGA-CG-4460-01 13 50306789 50306789 G A KPNA3 Missense_Mutation p.A80V 0.18 tolerated(1) benign(0.439) TCGA-CG-4460-01 13 60498968 60498968 G A DIAPH3 Missense_Mutation p.S704L 0.24 tolerated(0.1) benign(0.001) TCGA-CG-4460-01 13 67477675 67477675 C T PCDH9 Silent p.T1033T 0.40 TCGA-CG-4460-01 13 70293601 70293601 C A KLHL1 Missense_Mutation p.G639C 0.50 tolerated(0.06) probably_damaging(0.997) TCGA-CG-4460-01 13 73303213 73303213 T A BORA Missense_Mutation p.F45L 0.21 deleterious(0.01) benign(0.403) TCGA-CG-4460-01 13 73636789 73636790 CA - KLF5 Frame_Shift_Del p.Q352Kfs*9 0.24 TCGA-CG-4460-01 13 75900464 75900464 C T TBC1D4 Silent p.P634P 0.33 TCGA-CG-4460-01 13 77799624 77799624 G A MYCBP2 Nonsense_Mutation p.R897* 0.46 TCGA-CG-4460-01 13 78475267 78475267 A - EDNRB Frame_Shift_Del p.Y383Ifs*3 0.25 TCGA-CG-4460-01 13 88329083 88329083 G A SLITRK5 Silent p.L480L 0.40 TCGA-CG-4460-01 13 96293698 96293698 G A DZIP1 Missense_Mutation p.R150C 0.53 deleterious(0) probably_damaging(0.932) TCGA-CG-4460-01 13 96665656 96665656 C T UGGT2 Missense_Mutation p.E189K 0.29 deleterious(0.02) probably_damaging(0.999) TCGA-CG-4460-01 13 98009776 98009776 A G MBNL2 Missense_Mutation p.Q282R 0.23 deleterious(0.05) benign(0.202) TCGA-CG-4460-01 13 98828264 98828264 C T RNF113B 3'UTR 0.19 TCGA-CG-4460-01 14 100165852 100165852 C T CYP46A1 Missense_Mutation p.A111V 0.76 tolerated(0.29) benign(0.074) TCGA-CG-4460-01 14 100615561 100615561 G A DEGS2 Missense_Mutation p.T190M 0.82 tolerated(0.23) benign(0.329) TCGA-CG-4460-01 14 101200555 101200555 C - DLK1 Frame_Shift_Del p.P160Lfs*50 0.18 TCGA-CG-4460-01 14 102391684 102391684 C T PPP2R5C 3'UTR 0.44 TCGA-CG-4460-01 14 102478440 102478440 G A DYNC1H1 Missense_Mutation p.V2283M 0.16 possibly_damaging(0.594) TCGA-CG-4460-01 14 102498794 102498796 GAG - DYNC1H1 In_Frame_Del p.E3358del 0.16 TCGA-CG-4460-01 14 102516461 102516461 G A DYNC1H1 Missense_Mutation p.A4580T 0.36 benign(0.001) TCGA-CG-4460-01 14 103342016 103342016 G A TRAF3 Missense_Mutation p.R118Q 0.72 deleterious(0.02) possibly_damaging(0.86) TCGA-CG-4460-01 14 103988481 103988481 G A CKB Missense_Mutation p.A76V 0.48 deleterious(0) possibly_damaging(0.875) TCGA-CG-4460-01 14 104378925 104378925 G A C14orf2 3'UTR 0.78 TCGA-CG-4460-01 14 105174185 105174185 C - INF2 Frame_Shift_Del p.V530Wfs*28 0.37 TCGA-CG-4460-01 14 105222982 105222982 C T SIVA1 Nonsense_Mutation p.R119* 0.80 TCGA-CG-4460-01 14 105355887 105355887 T C CEP170B Intron 0.22 TCGA-CG-4460-01 14 105414483 105414483 C T AHNAK2 Silent p.T2435T 0.71 TCGA-CG-4460-01 14 105477987 105477987 G A CDCA4 Missense_Mutation p.R94C 0.71 tolerated(0.07) possibly_damaging(0.899) TCGA-CG-4460-01 14 106110437 106110437 C T IGHG2 Missense_Mutation p.R100H 0.76 tolerated(0.43) benign(0.007) TCGA-CG-4460-01 14 107282956 107282956 C A IGHV7-81 Missense_Mutation p.G63W 0.22 deleterious(0.01) benign(0.159) TCGA-CG-4460-01 14 107283035 107283035 T C IGHV7-81 Silent p.S36S 0.35 TCGA-CG-4460-01 14 20248864 20248864 G A OR4M1 Missense_Mutation p.R128Q 0.19 tolerated(0.14) benign(0.011) TCGA-CG-4460-01 14 21052301 21052301 G A RNASE11 Silent p.N111N 0.20 TCGA-CG-4460-01 14 21558707 21558707 C - ZNF219 Frame_Shift_Del p.Q720Kfs*28 0.60 TCGA-CG-4460-01 14 21968680 21968680 C T METTL3 Missense_Mutation p.V421I 0.70 tolerated(0.27) benign(0.022) TCGA-CG-4460-01 14 22314889 22314889 C - TRAV8-2 5'UTR 0.20 TCGA-CG-4460-01 14 22749037 22749037 G A TRAV38-2DV8 Missense_Mutation p.A2T 0.74 tolerated(0.61) benign(0.002) TCGA-CG-4460-01 14 24618732 24618732 G A RNF31 Missense_Mutation p.R250H 0.75 deleterious(0) probably_damaging(0.999) TCGA-CG-4460-01 14 24626606 24626606 C T RNF31 Silent p.N867N 0.31 TCGA-CG-4460-01 14 24647327 24647327 C T REC8 Missense_Mutation p.R298C 0.18 deleterious(0.02) benign(0.339) TCGA-CG-4460-01 14 24656872 24656873 - CT IPO4 Frame_Shift_Ins p.M137Rfs*7 0.21 TCGA-CG-4460-01 14 24738722 24738722 G A RABGGTA Silent p.R202R 0.22 TCGA-CG-4460-01 14 24773247 24773247 G A NOP9 Missense_Mutation p.V471M 0.38 tolerated(0.15) benign(0.019) TCGA-CG-4460-01 14 24801132 24801132 G A ADCY4 Silent p.N177N 0.61 TCGA-CG-4460-01 14 24843636 24843636 C T NFATC4 Missense_Mutation p.P676S 0.74 tolerated(0.27) benign(0.279) TCGA-CG-4460-01 14 24898055 24898055 G - CBLN3 Frame_Shift_Del p.P69Lfs*35 0.26 TCGA-CG-4460-01 14 30135384 30135384 C T PRKD1 Missense_Mutation p.R145H 0.77 tolerated(0.06) probably_damaging(0.993) TCGA-CG-4460-01 14 31074771 31074772 - A G2E3 Frame_Shift_Ins p.T361Nfs*2 0.42 TCGA-CG-4460-01 14 36230206 36230206 G A RALGAPA1 Missense_Mutation p.R126W 0.82 deleterious(0.02) probably_damaging(0.949) TCGA-CG-4460-01 14 36988636 36988636 T - NKX2-1 Intron 0.28 TCGA-CG-4460-01 14 38724080 38724080 G A CLEC14A Missense_Mutation p.T383M 0.13 deleterious(0) probably_damaging(0.988) TCGA-CG-4460-01 14 39717065 39717065 G A MIA2 Silent p.T429T 0.25 TCGA-CG-4460-01 14 45540973 45540973 A - FAM179B Frame_Shift_Del p.K1624Nfs*4 0.28 TCGA-CG-4460-01 14 47120953 47120953 C T RPL10L 5'UTR 0.75 TCGA-CG-4460-01 14 50734515 50734515 G T L2HGDH Silent p.P340P 0.17 TCGA-CG-4460-01 14 52937396 52937396 T C TXNDC16 Missense_Mutation p.T439A 0.68 tolerated(0.08) benign(0.023) TCGA-CG-4460-01 14 55236839 55236840 - A SAMD4A Frame_Shift_Ins p.R541Kfs*111 0.30 TCGA-CG-4460-01 14 57114244 57114244 C T TMEM260 3'UTR 0.80 TCGA-CG-4460-01 14 59789836 59789836 G A DAAM1 Missense_Mutation p.V223M 0.37 deleterious(0) unknown(0) TCGA-CG-4460-01 14 59930747 59930747 G A GPR135 Missense_Mutation p.R400C 0.28 deleterious(0) probably_damaging(0.991) TCGA-CG-4460-01 14 59931429 59931429 C T GPR135 Silent p.A172A 0.42 TCGA-CG-4460-01 14 61923899 61923899 C T PRKCH Silent p.L322L 0.76 TCGA-CG-4460-01 14 63174626 63174626 T - KCNH5 Frame_Shift_Del p.N856Tfs*3 0.33 TCGA-CG-4460-01 14 65194559 65194559 C T PLEKHG3 Silent p.N70N 0.79 TCGA-CG-4460-01 14 65260238 65260238 C T SPTB Missense_Mutation p.E715K 0.22 tolerated(0.31) benign(0.003) TCGA-CG-4460-01 14 65399009 65399009 T C CHURC1 3'UTR 0.14 TCGA-CG-4460-01 14 70926049 70926050 TG - ADAM21 Frame_Shift_Del p.C613Wfs*9 0.17 TCGA-CG-4460-01 14 71205092 71205092 T G MAP3K9 Missense_Mutation p.T572P 0.18 tolerated(0.05) benign(0.057) TCGA-CG-4460-01 14 71206776 71206776 C T MAP3K9 Missense_Mutation p.R558H 0.75 deleterious(0.01) benign(0.444) TCGA-CG-4460-01 14 71209088 71209088 T G MAP3K9 Missense_Mutation p.N516T 0.17 deleterious(0.01) benign(0.281) TCGA-CG-4460-01 14 71227784 71227784 C T MAP3K9 Silent p.T312T 0.74 TCGA-CG-4460-01 14 72139238 72139238 G A SIPA1L1 Silent p.A1001A 0.66 TCGA-CG-4460-01 14 74967568 74967568 C T LTBP2 3'UTR 0.31 TCGA-CG-4460-01 14 76429701 76429701 C - TGFB3 Frame_Shift_Del p.G295Vfs*74 0.32 TCGA-CG-4460-01 14 77245444 77245444 C T VASH1 3'UTR 0.15 TCGA-CG-4460-01 14 77600015 77600015 G A ZDHHC22 3'UTR 0.24 TCGA-CG-4460-01 14 77708714 77708714 C T TMEM63C Silent p.V363V 0.18 TCGA-CG-4460-01 14 77746241 77746241 C T POMT2 Missense_Mutation p.A606T 0.25 tolerated(0.1) benign(0.026) TCGA-CG-4460-01 14 81209453 81209453 C T CEP128 Silent p.E924E 0.13 TCGA-CG-4460-01 14 81575006 81575006 G A TSHR Intron 0.15 TCGA-CG-4460-01 14 81646522 81646522 T - GTF2A1 3'UTR 0.28 TCGA-CG-4460-01 14 81743649 81743649 G A STON2 Missense_Mutation p.A669V 0.25 deleterious(0) probably_damaging(0.996) TCGA-CG-4460-01 14 90752830 90752830 G A NRDE2 Silent p.D1055D 0.82 TCGA-CG-4460-01 14 91084274 91084274 T C TTC7B Missense_Mutation p.S623G 0.18 tolerated(0.29) benign(0.008) TCGA-CG-4460-01 14 91700968 91700968 C T GPR68 Missense_Mutation p.V143M 0.33 tolerated(0.07) benign(0.164) TCGA-CG-4460-01 14 92159484 92159484 G A CATSPERB Missense_Mutation p.R273C 0.18 deleterious(0.02) benign(0.005) TCGA-CG-4460-01 14 92601793 92601795 AGA - CPSF2 In_Frame_Del p.E169del 0.16 TCGA-CG-4460-01 14 93299610 93299610 C G GOLGA5 Silent p.R621R 0.17 TCGA-CG-4460-01 14 94088050 94088050 A - UNC79 Frame_Shift_Del p.K1316Sfs*12 0.32 TCGA-CG-4460-01 14 94512115 94512115 G A OTUB2 Silent p.S184S 0.28 TCGA-CG-4460-01 14 95035870 95035870 T - SERPINA4 Frame_Shift_Del p.S409Pfs*73 0.29 TCGA-CG-4460-01 14 96770925 96770925 C T ATG2B Silent p.S1583S 0.19 TCGA-CG-4460-01 14 99865307 99865307 C T SETD3 Silent p.P498P 0.74 TCGA-CG-4460-01 15 100339971 100339971 G A DNM1P46 RNA 0.66 TCGA-CG-4460-01 15 101042044 101042044 G A CERS3 Missense_Mutation p.T4M 0.47 deleterious(0.02) benign(0.077) TCGA-CG-4460-01 15 101549173 101549173 C A LRRK1 Silent p.P298P 0.36 TCGA-CG-4460-01 15 20193164 20193164 C - IGHV3OR15-7 Frame_Shift_Del p.G35Vfs*3 0.21 TCGA-CG-4460-01 15 22956318 22956318 C T CYFIP1 Intron 0.25 TCGA-CG-4460-01 15 25342807 25342807 C A SNORD116-25 5'Flank 0.22 TCGA-CG-4460-01 15 27193302 27193302 C A GABRA5 Missense_Mutation p.F437L 0.21 deleterious(0) probably_damaging(0.996) TCGA-CG-4460-01 15 28326980 28326980 G A OCA2 Missense_Mutation p.A14V 0.30 tolerated_low_confidence(0.51) benign(0) TCGA-CG-4460-01 15 28474693 28474693 A G HERC2 Missense_Mutation p.L1678P 0.23 possibly_damaging(0.548) TCGA-CG-4460-01 15 28525215 28525215 T - HERC2 Frame_Shift_Del p.S181Vfs*85 0.27 TCGA-CG-4460-01 15 33938666 33938666 G A RYR3 Missense_Mutation p.V1294I 0.44 benign(0.002) TCGA-CG-4460-01 15 34118461 34118461 C T RYR3 Missense_Mutation p.R3719W 0.17 possibly_damaging(0.517) TCGA-CG-4460-01 15 34354946 34354946 A G CHRM5 Missense_Mutation p.T10A 0.16 tolerated(0.1) benign(0.11) TCGA-CG-4460-01 15 41191818 41191818 A G VPS18 Missense_Mutation p.S268G 0.04 tolerated(0.05) benign(0.355) TCGA-CG-4460-01 15 42115755 42115755 C T MAPKBP1 Missense_Mutation p.R1243W 0.35 deleterious(0.02) benign(0.004) TCGA-CG-4460-01 15 42162711 42162711 G A SPTBN5 Missense_Mutation p.A1832V 0.18 benign(0.021) TCGA-CG-4460-01 15 42193248 42193248 C T EHD4 Silent p.T407T 0.60 TCGA-CG-4460-01 15 42362977 42362977 G A PLA2G4D Missense_Mutation p.R661W 0.29 deleterious(0.02) benign(0.019) TCGA-CG-4460-01 15 42695177 42695179 CTC - CAPN3 In_Frame_Del p.S575del 0.24 TCGA-CG-4460-01 15 43044817 43044817 T - TTBK2 Frame_Shift_Del p.N876Ifs*10 0.25 TCGA-CG-4460-01 15 43067378 43067378 C T TTBK2 Silent p.T651T 0.22 TCGA-CG-4460-01 15 43483809 43483809 G T CCNDBP1 Missense_Mutation p.G266W 0.46 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 15 43544999 43544999 G A TGM5 Missense_Mutation p.R274C 0.17 tolerated(0.07) benign(0.027) TCGA-CG-4460-01 15 43571937 43571937 G A TGM7 Missense_Mutation p.R522W 0.25 tolerated(0.1) benign(0.003) TCGA-CG-4460-01 15 43661137 43661137 T G ZSCAN29 Missense_Mutation p.K169N 0.19 tolerated(0.19) benign(0.051) TCGA-CG-4460-01 15 43896937 43896937 C A STRC Silent p.L1346L 0.16 TCGA-CG-4460-01 15 45386840 45386840 G A DUOX2 Missense_Mutation p.T1482M 0.55 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 15 45444210 45444210 C A DUOX1 Missense_Mutation p.F1051L 0.50 deleterious(0.04) benign(0.167) TCGA-CG-4460-01 15 45847976 45847976 G A RP11-96O20.2 5'Flank 0.27 TCGA-CG-4460-01 15 48780614 48780614 G A FBN1 Silent p.C1053C 0.25 TCGA-CG-4460-01 15 49254948 49254948 G - SHC4 Frame_Shift_Del p.R89Afs*5 0.19 TCGA-CG-4460-01 15 50534550 50534550 T - HDC Frame_Shift_Del p.K632Nfs*85 0.26 TCGA-CG-4460-01 15 51778359 51778359 C T DMXL2 Missense_Mutation p.R1798H 0.27 deleterious(0) probably_damaging(0.999) TCGA-CG-4460-01 15 53049695 53049695 A - ONECUT1 3'UTR 0.28 TCGA-CG-4460-01 15 53908071 53908071 T - WDR72 Frame_Shift_Del p.M778Cfs*9 0.23 TCGA-CG-4460-01 15 55838476 55838476 C T PYGO1 Silent p.S335S 0.20 TCGA-CG-4460-01 15 56386881 56386881 G - RFX7 Frame_Shift_Del p.S1016Afs*14 0.36 TCGA-CG-4460-01 15 56681525 56681525 A - TEX9 Frame_Shift_Del p.N109Tfs*5 0.32 TCGA-CG-4460-01 15 56958908 56958908 T - ZNF280D Frame_Shift_Del p.S608Vfs*7 0.28 TCGA-CG-4460-01 15 59963459 59963459 A T BNIP2 Nonsense_Mutation p.Y331* 0.21 TCGA-CG-4460-01 15 62217710 62217710 G A VPS13C Missense_Mutation p.T2185M 0.25 tolerated(0.15) benign(0.007) TCGA-CG-4460-01 15 63031668 63031668 C T TLN2 Missense_Mutation p.A1270V 0.28 deleterious(0) possibly_damaging(0.564) TCGA-CG-4460-01 15 63047743 63047743 G A TLN2 Missense_Mutation p.A1497T 0.54 deleterious(0.01) probably_damaging(0.975) TCGA-CG-4460-01 15 63950833 63950833 C T HERC1 Missense_Mutation p.R3170H 0.33 probably_damaging(0.996) TCGA-CG-4460-01 15 63984649 63984649 C T HERC1 Missense_Mutation p.E1931K 0.36 possibly_damaging(0.725) TCGA-CG-4460-01 15 64495365 64495365 G A CSNK1G1 Silent p.H341H 0.40 TCGA-CG-4460-01 15 64716345 64716345 C T TRIP4 Missense_Mutation p.R492C 0.21 tolerated(0.17) benign(0.016) TCGA-CG-4460-01 15 64982608 64982608 G A OAZ2 Silent p.I106I 0.20 TCGA-CG-4460-01 15 65681620 65681620 A G IGDCC4 Splice_Site p.X846_splice 0.24 TCGA-CG-4460-01 15 65808056 65808056 C T DPP8 5'UTR 0.45 TCGA-CG-4460-01 15 65983356 65983356 A G DENND4A Silent p.R1191R 0.11 TCGA-CG-4460-01 15 66273116 66273116 C T MEGF11 Silent p.T254T 0.35 TCGA-CG-4460-01 15 69692425 69692425 G T PAQR5 Missense_Mutation p.R241L 0.23 deleterious(0) possibly_damaging(0.702) TCGA-CG-4460-01 15 70356794 70356794 G A TLE3 Missense_Mutation p.A198V 0.39 tolerated(0.32) benign(0.008) TCGA-CG-4460-01 15 72119141 72119141 C T MYO9A Missense_Mutation p.G2476D 0.43 tolerated_low_confidence(0.2) benign(0.157) TCGA-CG-4460-01 15 72580692 72580692 A G CELF6 Silent p.A425A 0.21 TCGA-CG-4460-01 15 74315212 74315212 G A PML Missense_Mutation p.A216T 0.44 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 15 74327978 74327978 C T PML Intron 0.20 TCGA-CG-4460-01 15 74328197 74328197 C T PML Intron 0.25 TCGA-CG-4460-01 15 74588232 74588232 G A CCDC33 Silent p.T411T 0.31 TCGA-CG-4460-01 15 74922173 74922173 C T CLK3 Silent p.G622G 0.56 TCGA-CG-4460-01 15 75644674 75644674 C - NEIL1 Frame_Shift_Del p.F191Lfs*20 0.36 TCGA-CG-4460-01 15 75980151 75980151 G T CSPG4 Missense_Mutation p.D1085E 0.19 deleterious(0) probably_damaging(0.999) TCGA-CG-4460-01 15 78212577 78212577 G A RP11-114H24.7 Intron 0.21 TCGA-CG-4460-01 15 78755308 78755308 C T IREB2 Nonsense_Mutation p.R51* 0.39 TCGA-CG-4460-01 15 78825820 78825820 C T HYKK Silent p.C310C 0.24 TCGA-CG-4460-01 15 79296445 79296445 G A RASGRF1 Silent p.R732R 0.46 TCGA-CG-4460-01 15 81229191 81229191 C T KIAA1199 Silent p.P1062P 0.39 TCGA-CG-4460-01 15 81271690 81271690 C T MESDC2 Missense_Mutation p.G192D 0.16 deleterious(0) probably_damaging(0.999) TCGA-CG-4460-01 15 81605643 81605643 C T STARD5 Missense_Mutation p.R199Q 0.40 tolerated(0.2) benign(0.003) TCGA-CG-4460-01 15 82450185 82450185 G A EFTUD1 Silent p.L633L 0.24 TCGA-CG-4460-01 15 84287033 84287033 T G SH3GL3 Silent p.P346P 0.14 TCGA-CG-4460-01 15 84611421 84611421 C T ADAMTSL3 Silent p.L731L 0.37 TCGA-CG-4460-01 15 85147411 85147411 C T ZSCAN2 Missense_Mutation p.R85W 0.14 tolerated(0.19) possibly_damaging(0.643) TCGA-CG-4460-01 15 85164376 85164376 G A ZSCAN2 Missense_Mutation p.R317K 0.25 tolerated(0.08) probably_damaging(0.919) TCGA-CG-4460-01 15 85383049 85383049 G A ALPK3 Missense_Mutation p.R382H 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-CG-4460-01 15 85383150 85383150 C T ALPK3 Missense_Mutation p.R416C 0.44 deleterious(0) probably_damaging(0.996) TCGA-CG-4460-01 15 86800191 86800191 C A AGBL1 Silent p.A235A 0.30 TCGA-CG-4460-01 15 89414619 89414619 A T ACAN Missense_Mutation p.E2318V 0.14 deleterious(0.01) probably_damaging(0.983) TCGA-CG-4460-01 15 89421180 89421180 G A HAPLN3 3'UTR 0.26 TCGA-CG-4460-01 15 89424613 89424613 G A HAPLN3 Silent p.S156S 0.29 TCGA-CG-4460-01 15 89828432 89828432 C T FANCI Nonsense_Mutation p.R602* 0.43 TCGA-CG-4460-01 15 90167670 90167670 C - TICRR Frame_Shift_Del p.P1378Lfs*50 0.38 TCGA-CG-4460-01 15 90904335 90904335 C T ZNF774 Silent p.I424I 0.06 TCGA-CG-4460-01 15 91035845 91035845 C T IQGAP1 Silent p.Y1510Y 0.51 TCGA-CG-4460-01 15 91292843 91292843 G A BLM Silent p.P115P 0.49 TCGA-CG-4460-01 15 91430230 91430230 C T FES Nonsense_Mutation p.R143* 0.12 TCGA-CG-4460-01 15 91448606 91448606 C T MAN2A2 Silent p.P86P 0.35 TCGA-CG-4460-01 15 91553068 91553068 C T VPS33B Silent p.A122A 0.37 TCGA-CG-4460-01 15 93043791 93043791 C T C15orf32 3'UTR 0.30 TCGA-CG-4460-01 15 93482924 93482924 G A CHD2 Missense_Mutation p.R223H 0.48 deleterious(0.01) benign(0.188) TCGA-CG-4460-01 15 96880779 96880779 C A NR2F2 Silent p.P391P 0.13 TCGA-CG-4460-01 15 99440008 99440008 G A IGF1R Missense_Mutation p.G326S 0.20 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 16 11933826 11933826 C T RSL1D1 Missense_Mutation p.R291Q 0.30 tolerated(0.51) benign(0.002) TCGA-CG-4460-01 16 1306689 1306689 G A TPSD1 Splice_Site p.X85_splice 0.37 TCGA-CG-4460-01 16 14530555 14530555 T C PARN 3'UTR 0.25 TCGA-CG-4460-01 16 1537873 1537873 C T PTX4 Silent p.A75A 0.53 TCGA-CG-4460-01 16 1545568 1545568 G A TELO2 Missense_Mutation p.R186H 0.28 deleterious(0) benign(0.411) TCGA-CG-4460-01 16 15457799 15457799 A G NPIPA5 Missense_Mutation p.I257T 0.16 tolerated(1) benign(0.004) TCGA-CG-4460-01 16 15788046 15788046 C - NDE1 Frame_Shift_Del p.L245Sfs*113 0.25 TCGA-CG-4460-01 16 15788102 15788102 C T NDE1 Missense_Mutation p.R262W 0.22 deleterious(0.05) possibly_damaging(0.885) TCGA-CG-4460-01 16 1633330 1633330 C T IFT140 Missense_Mutation p.A473T 0.18 tolerated(1) benign(0) TCGA-CG-4460-01 16 1710020 1710020 G A CRAMP1L Missense_Mutation p.R790H 0.29 deleterious(0.04) possibly_damaging(0.462) TCGA-CG-4460-01 16 1828000 1828000 G A SPSB3 Missense_Mutation p.T181M 0.22 tolerated(0.08) probably_damaging(0.932) TCGA-CG-4460-01 16 1841082 1841082 A C IGFALS Missense_Mutation p.L484R 0.45 deleterious(0) probably_damaging(0.993) TCGA-CG-4460-01 16 18849447 18849447 A G SMG1 Silent p.A2434A 0.15 TCGA-CG-4460-01 16 19492724 19492724 G A TMC5 Missense_Mutation p.G767D 0.19 deleterious(0.02) probably_damaging(0.987) TCGA-CG-4460-01 16 2050479 2050479 G T ZNF598 Missense_Mutation p.P402H 0.42 possibly_damaging(0.789) TCGA-CG-4460-01 16 20843544 20843544 A - AC004381.6 Frame_Shift_Del p.N410Tfs*14 0.30 TCGA-CG-4460-01 16 20996750 20996750 G A DNAH3 Silent p.S2438S 0.42 TCGA-CG-4460-01 16 21185430 21185430 T G TMEM159 Missense_Mutation p.V122G 0.20 deleterious(0) probably_damaging(0.929) TCGA-CG-4460-01 16 21213561 21213561 C T ZP2 Missense_Mutation p.S384N 0.36 tolerated(0.07) benign(0.314) TCGA-CG-4460-01 16 2121606 2121606 C A TSC2 Silent p.V645V 0.27 TCGA-CG-4460-01 16 22926931 22926931 C T HS3ST2 3'UTR 0.34 TCGA-CG-4460-01 16 23079454 23079454 C T USP31 Silent p.P1324P 0.43 TCGA-CG-4460-01 16 23504692 23504692 A C GGA2 Missense_Mutation p.L114V 0.26 tolerated(0.93) probably_damaging(1) TCGA-CG-4460-01 16 23646981 23646981 T - PALB2 Frame_Shift_Del p.M296* 0.40 TCGA-CG-4460-01 16 23703340 23703340 G - ERN2 Frame_Shift_Del p.Q822Rfs*35 0.35 TCGA-CG-4460-01 16 2546268 2546268 G A RP11-20I23.1 Missense_Mutation p.R40H 0.22 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 16 2577803 2577803 C T AMDHD2 Missense_Mutation p.R149W 0.27 tolerated(0.08) benign(0.052) TCGA-CG-4460-01 16 28606997 28606997 C A SULT1A2 Splice_Site p.X50_splice 0.11 TCGA-CG-4460-01 16 28619925 28619925 C A SULT1A1 Splice_Site p.X50_splice 0.34 TCGA-CG-4460-01 16 28847350 28847350 G - ATXN2L Frame_Shift_Del p.Q1002Kfs*95 0.32 TCGA-CG-4460-01 16 28857350 28857350 G A TUFM Missense_Mutation p.R44C 0.19 deleterious(0) probably_damaging(0.96) TCGA-CG-4460-01 16 2979879 2979879 G A FLYWCH1 Missense_Mutation p.V65I 0.23 tolerated_low_confidence(0.5) possibly_damaging(0.504) TCGA-CG-4460-01 16 29996571 29996571 C T TAOK2 Missense_Mutation p.A487V 0.30 deleterious(0.04) possibly_damaging(0.512) TCGA-CG-4460-01 16 30455815 30455815 G A SEPHS2 Nonsense_Mutation p.R412* 0.32 TCGA-CG-4460-01 16 30566704 30566704 C T ZNF764 Silent p.P346P 0.69 TCGA-CG-4460-01 16 30566822 30566822 C T ZNF764 Missense_Mutation p.R307H 0.45 deleterious(0.01) probably_damaging(0.986) TCGA-CG-4460-01 16 30594308 30594308 C T ZNF785 Missense_Mutation p.R264H 0.32 tolerated(0.56) probably_damaging(0.991) TCGA-CG-4460-01 16 3065782 3065782 G A CLDN6 Missense_Mutation p.R81C 0.54 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 16 30732215 30732215 G A SRCAP Missense_Mutation p.G1057R 0.16 unknown(0) TCGA-CG-4460-01 16 30734042 30734042 C A SRCAP Missense_Mutation p.L1289I 0.36 unknown(0) TCGA-CG-4460-01 16 30744600 30744600 G A SRCAP Splice_Site p.X2043_splice 0.19 TCGA-CG-4460-01 16 30785352 30785352 C T RNF40 Missense_Mutation p.R975C 0.17 deleterious(0) probably_damaging(0.995) TCGA-CG-4460-01 16 30964716 30964716 G A ORAI3 Missense_Mutation p.V147M 0.22 deleterious(0) probably_damaging(0.972) TCGA-CG-4460-01 16 30990970 30990970 G A SETD1A Missense_Mutation p.R1288H 0.42 unknown(0) TCGA-CG-4460-01 16 31072706 31072706 G - ZNF668 Frame_Shift_Del p.Q538Sfs*14 0.38 TCGA-CG-4460-01 16 31072900 31072900 G A ZNF668 Missense_Mutation p.A473V 0.16 tolerated(0.61) benign(0.001) TCGA-CG-4460-01 16 31099137 31099137 G A RP11-196G11.1 Silent p.A98A 0.32 TCGA-CG-4460-01 16 31230743 31230743 G A TRIM72 Missense_Mutation p.R207Q 0.29 tolerated(0.64) benign(0.187) TCGA-CG-4460-01 16 31470964 31470964 T C ARMC5 Missense_Mutation p.L40P 0.22 deleterious(0.02) unknown(0) TCGA-CG-4460-01 16 314861 314861 C T ITFG3 Missense_Mutation p.P500L 0.37 deleterious(0.02) probably_damaging(1) TCGA-CG-4460-01 16 31501450 31501450 G A SLC5A2 Missense_Mutation p.R564Q 0.18 deleterious(0.01) probably_damaging(0.997) TCGA-CG-4460-01 16 321227 321227 G A RGS11 Silent p.D279D 0.43 TCGA-CG-4460-01 16 3340004 3340004 G A ZNF263 Missense_Mutation p.A500T 0.15 tolerated(0.61) benign(0.142) TCGA-CG-4460-01 16 3714425 3714425 C T TRAP1 Silent p.S473S 0.21 TCGA-CG-4460-01 16 3843434 3843434 T - CREBBP Frame_Shift_Del p.N390Tfs*3 0.34 TCGA-CG-4460-01 16 4382338 4382338 G A GLIS2 Silent p.A19A 0.26 TCGA-CG-4460-01 16 4390271 4390271 A G CORO7-PAM16 3'UTR 0.26 TCGA-CG-4460-01 16 4562492 4562492 C T CDIP1 3'UTR 0.25 TCGA-CG-4460-01 16 47117523 47117523 G A NETO2 Missense_Mutation p.P396L 0.24 deleterious(0.04) benign(0.177) TCGA-CG-4460-01 16 47189455 47189455 A - ITFG1 3'UTR 0.47 TCGA-CG-4460-01 16 4802835 4802835 C T ZNF500 Missense_Mutation p.E329K 0.20 deleterious(0.01) benign(0.023) TCGA-CG-4460-01 16 48232052 48232052 C T ABCC11 Silent p.S739S 0.35 TCGA-CG-4460-01 16 4903054 4903054 C T UBN1 Missense_Mutation p.R46W 0.21 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 16 4933850 4933850 C T PPL Silent p.A1602A 0.46 TCGA-CG-4460-01 16 49670971 49670971 C T ZNF423 Missense_Mutation p.D698N 0.18 tolerated(0.11) possibly_damaging(0.734) TCGA-CG-4460-01 16 51174641 51174641 G A SALL1 Missense_Mutation p.R498C 0.34 deleterious(0) probably_damaging(0.999) TCGA-CG-4460-01 16 57060074 57060074 G A NLRC5 Missense_Mutation p.A407T 0.34 deleterious(0) possibly_damaging(0.797) TCGA-CG-4460-01 16 57406450 57406450 C - CX3CL1 5'UTR 0.44 TCGA-CG-4460-01 16 57596318 57596318 C T GPR114 Silent p.S29S 0.29 TCGA-CG-4460-01 16 57717983 57717984 - G GPR97 Frame_Shift_Ins p.A343Gfs*17 0.22 TCGA-CG-4460-01 16 57794729 57794729 C T KIFC3 Missense_Mutation p.R714H 0.31 deleterious(0.02) benign(0.263) TCGA-CG-4460-01 16 58031068 58031068 C A ZNF319 Nonsense_Mutation p.E368* 0.30 TCGA-CG-4460-01 16 58324952 58324952 C T PRSS54 Silent p.S58S 0.38 TCGA-CG-4460-01 16 67042892 67042892 G A CES4A Missense_Mutation p.G444E 0.36 tolerated_low_confidence(0.26) benign(0.001) TCGA-CG-4460-01 16 67221173 67221173 G A EXOC3L1 Missense_Mutation p.A332V 0.31 tolerated(0.06) benign(0.42) TCGA-CG-4460-01 16 67322226 67322226 G A PLEKHG4 Missense_Mutation p.R1126H 0.41 tolerated(0.34) benign(0) TCGA-CG-4460-01 16 67942751 67942751 C T PSKH1 Silent p.D33D 0.41 TCGA-CG-4460-01 16 68156559 68156559 G A NFATC3 Missense_Mutation p.R258K 0.12 deleterious(0) probably_damaging(0.989) TCGA-CG-4460-01 16 68404954 68404954 C T SMPD3 Silent p.Q377Q 0.19 TCGA-CG-4460-01 16 68893837 68893837 A G TANGO6 Missense_Mutation p.T49A 0.38 tolerated(0.35) benign(0.194) TCGA-CG-4460-01 16 69143442 69143442 C T HAS3 Silent p.Y48Y 0.19 TCGA-CG-4460-01 16 69362823 69362824 AT - RP11-343C2.12 3'UTR 0.28 TCGA-CG-4460-01 16 70064927 70064927 G A MIR1972-2 3'Flank 0.18 TCGA-CG-4460-01 16 70432300 70432300 G A ST3GAL2 Missense_Mutation p.T45M 0.18 benign(0.062) TCGA-CG-4460-01 16 70605046 70605046 C - SF3B3 Frame_Shift_Del p.P1154Lfs*17 0.34 TCGA-CG-4460-01 16 71570700 71570700 C T CHST4 Silent p.P40P 0.43 TCGA-CG-4460-01 16 720500 720500 C T RHOT2 Silent p.Y161Y 0.48 TCGA-CG-4460-01 16 722106 722106 C T RHOT2 Missense_Mutation p.R374W 0.42 deleterious(0.03) possibly_damaging(0.773) TCGA-CG-4460-01 16 72820945 72820946 - C ZFHX3 3'UTR 0.24 TCGA-CG-4460-01 16 72845839 72845839 G A ZFHX3 Nonsense_Mutation p.R1210* 0.41 TCGA-CG-4460-01 16 72993280 72993280 G A ZFHX3 Silent p.C255C 0.35 TCGA-CG-4460-01 16 737600 737600 G A WDR24 Silent p.N207N 0.20 TCGA-CG-4460-01 16 74338254 74338254 A T PSMD7 Silent p.A164A 0.36 TCGA-CG-4460-01 16 74537581 74537581 G A GLG1 Nonsense_Mutation p.R208* 0.21 TCGA-CG-4460-01 16 75237998 75237998 G T CTRB2 3'UTR 0.30 TCGA-CG-4460-01 16 75263717 75263717 C T BCAR1 Missense_Mutation p.V815M 0.36 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 16 75600341 75600341 T C GABARAPL2 5'UTR 0.50 TCGA-CG-4460-01 16 75669879 75669879 C T KARS Silent p.P228P 0.31 TCGA-CG-4460-01 16 76523682 76523682 C T CNTNAP4 Missense_Mutation p.A588V 0.52 tolerated(0.07) possibly_damaging(0.468) TCGA-CG-4460-01 16 772358 772358 G A FAM173A Missense_Mutation p.R170H 0.36 deleterious(0.01) probably_damaging(0.993) TCGA-CG-4460-01 16 77356245 77356245 G A ADAMTS18 Silent p.D717D 0.34 TCGA-CG-4460-01 16 81145769 81145769 G A PKD1L2 Intron 0.39 TCGA-CG-4460-01 16 81694495 81694495 G A CMIP Missense_Mutation p.A230T 0.33 tolerated(0.07) probably_damaging(0.985) TCGA-CG-4460-01 16 84070450 84070450 A G SLC38A8 Missense_Mutation p.V82A 0.36 tolerated(0.44) benign(0.035) TCGA-CG-4460-01 16 847947 847947 G A CHTF18 Missense_Mutation p.R967H 0.14 deleterious(0) probably_damaging(0.999) TCGA-CG-4460-01 16 84812551 84812551 G A USP10 Missense_Mutation p.V754I 0.17 deleterious(0.01) probably_damaging(0.949) TCGA-CG-4460-01 16 85689448 85689448 G A GSE1 Missense_Mutation p.R305H 0.42 deleterious(0.04) unknown(0) TCGA-CG-4460-01 16 85838591 85838591 G A COX4I1 Missense_Mutation p.R41Q 0.33 tolerated(0.25) benign(0.353) TCGA-CG-4460-01 16 86565672 86565672 C T MTHFSD Missense_Mutation p.R366H 0.36 tolerated(0.24) benign(0.002) TCGA-CG-4460-01 16 8738424 8738424 A G METTL22 Missense_Mutation p.T341A 0.13 deleterious(0) probably_damaging(0.986) TCGA-CG-4460-01 16 88643558 88643558 G T ZC3H18 Silent p.R9R 0.15 TCGA-CG-4460-01 16 8889849 8889849 C T TMEM186 Missense_Mutation p.R201H 0.15 deleterious(0.02) probably_damaging(0.96) TCGA-CG-4460-01 16 88945800 88945800 G A CBFA2T3 Missense_Mutation p.R514C 0.40 deleterious(0.03) probably_damaging(0.943) TCGA-CG-4460-01 16 89350037 89350037 C T ANKRD11 Silent p.A971A 0.19 TCGA-CG-4460-01 16 8953080 8953080 C T CARHSP1 Missense_Mutation p.G36S 0.24 tolerated(0.24) benign(0.063) TCGA-CG-4460-01 16 89805603 89805603 C T FANCA Missense_Mutation p.V1369M 0.13 tolerated(0.06) possibly_damaging(0.623) TCGA-CG-4460-01 16 89805716 89805716 T C ZNF276 3'Flank 0.15 TCGA-CG-4460-01 16 8996253 8996253 G A USP7 Silent p.A642A 0.27 TCGA-CG-4460-01 16 89977704 89977704 C T TCF25 3'UTR 0.42 TCGA-CG-4460-01 16 90016024 90016024 G A DEF8 Missense_Mutation p.A51T 0.37 tolerated_low_confidence(0.12) benign(0.008) TCGA-CG-4460-01 16 90075744 90075744 G A DBNDD1 Silent p.V62V 0.42 TCGA-CG-4460-01 16 90160999 90160999 C T TUBB8P7 Intron 0.19 TCGA-CG-4460-01 17 10216651 10216651 G A MYH13 Silent p.H1335H 0.38 TCGA-CG-4460-01 17 10536067 10536067 C T MYH3 Missense_Mutation p.R1561Q 0.32 deleterious(0.01) benign(0.038) TCGA-CG-4460-01 17 10538859 10538859 C T MYH3 Missense_Mutation p.A1333T 0.37 deleterious(0.01) benign(0.101) TCGA-CG-4460-01 17 10608653 10608653 A G ADPRM Missense_Mutation p.H137R 0.20 tolerated(0.34) benign(0.003) TCGA-CG-4460-01 17 11790241 11790241 G A DNAH9 Missense_Mutation p.D3691N 0.32 benign(0.028) TCGA-CG-4460-01 17 1183168 1183168 G A TUSC5 5'UTR 0.55 TCGA-CG-4460-01 17 1377960 1377960 T A MYO1C Missense_Mutation p.I581F 0.14 deleterious(0) probably_damaging(0.977) TCGA-CG-4460-01 17 1489235 1489235 C T SLC43A2 Missense_Mutation p.E397K 0.38 tolerated(0.43) benign(0.004) TCGA-CG-4460-01 17 1538542 1538542 C T SCARF1 Missense_Mutation p.R668Q 0.39 tolerated(0.16) benign(0.016) TCGA-CG-4460-01 17 15619679 15619679 C G ZNF286A Missense_Mutation p.S214C 0.33 tolerated(0.06) possibly_damaging(0.617) TCGA-CG-4460-01 17 1578462 1578462 A G PRPF8 Missense_Mutation p.V1015A 0.14 tolerated(0.06) possibly_damaging(0.73) TCGA-CG-4460-01 17 17699661 17699661 A G RAI1 Silent p.S1133S 0.15 TCGA-CG-4460-01 17 18022482 18022482 G A MYO15A Missense_Mutation p.R123H 0.37 probably_damaging(0.989) TCGA-CG-4460-01 17 18051508 18051508 C T MYO15A Silent p.D2225D 0.34 TCGA-CG-4460-01 17 19237344 19237344 G A EPN2 Missense_Mutation p.R568Q 0.41 deleterious(0.04) possibly_damaging(0.837) TCGA-CG-4460-01 17 19284526 19284526 G A MAPK7 Missense_Mutation p.R335H 0.37 deleterious(0) unknown(0) TCGA-CG-4460-01 17 19720162 19720162 T C ULK2 Silent p.L332L 0.18 TCGA-CG-4460-01 17 20805664 20805664 C T RP11-344E13.3 RNA 0.40 TCGA-CG-4460-01 17 2203723 2203723 A G SMG6 Silent p.G108G 0.15 TCGA-CG-4460-01 17 2275534 2275534 G A SGSM2 Missense_Mutation p.R543Q 0.17 deleterious(0.02) benign(0.329) TCGA-CG-4460-01 17 26084327 26084327 G A NOS2 Missense_Mutation p.A1136V 0.30 tolerated(0.57) benign(0.001) TCGA-CG-4460-01 17 26105953 26105953 G A NOS2 Silent p.I378I 0.36 TCGA-CG-4460-01 17 26370267 26370267 C T NLK Missense_Mutation p.A123V 0.35 tolerated(0.21) benign(0.07) TCGA-CG-4460-01 17 264036 264036 C T C17orf97 3'UTR 0.17 TCGA-CG-4460-01 17 26696542 26696542 A C VTN Missense_Mutation p.L172R 0.15 deleterious(0) probably_damaging(0.981) TCGA-CG-4460-01 17 26919486 26919486 C T SPAG5 Missense_Mutation p.R259H 0.24 deleterious_low_confidence(0.01) benign(0.004) TCGA-CG-4460-01 17 27211256 27211256 G A FLOT2 Missense_Mutation p.T70M 0.28 deleterious(0) probably_damaging(0.998) TCGA-CG-4460-01 17 27225700 27225700 C T DHRS13 Missense_Mutation p.R298Q 0.42 tolerated(0.5) benign(0.007) TCGA-CG-4460-01 17 27416998 27416998 G A MYO18A Missense_Mutation p.T1836M 0.41 deleterious(0.02) probably_damaging(0.988) TCGA-CG-4460-01 17 30965803 30965803 A G MYO1D Silent p.R882R 0.30 TCGA-CG-4460-01 17 31258553 31258553 A T TMEM98 Missense_Mutation p.T3S 0.23 tolerated(0.07) benign(0.292) TCGA-CG-4460-01 17 31258602 31258602 C T TMEM98 Missense_Mutation p.S19L 0.55 deleterious(0) benign(0.32) TCGA-CG-4460-01 17 32964376 32964376 C T TMEM132E Missense_Mutation p.R694C 0.35 deleterious(0) possibly_damaging(0.899) TCGA-CG-4460-01 17 33319650 33319650 C T LIG3 Missense_Mutation p.P465L 0.35 tolerated(0.08) benign(0.137) TCGA-CG-4460-01 17 33464020 33464020 G A NLE1 Silent p.D276D 0.30 TCGA-CG-4460-01 17 33592375 33592375 C T SLFN5 Missense_Mutation p.A715V 0.16 deleterious(0) possibly_damaging(0.903) TCGA-CG-4460-01 17 34266362 34266362 C A LYZL6 5'UTR 0.20 TCGA-CG-4460-01 17 34391748 34391748 G A CCL18 Missense_Mutation p.A16T 0.43 tolerated(0.21) benign(0.236) TCGA-CG-4460-01 17 34937873 34937873 C T GGNBP2 Missense_Mutation p.R374C 0.36 deleterious(0) probably_damaging(0.996) TCGA-CG-4460-01 17 35413944 35413944 G A AATF Missense_Mutation p.D555N 0.36 tolerated(0.43) benign(0.146) TCGA-CG-4460-01 17 35601610 35601610 G A ACACA Missense_Mutation p.T879M 0.16 deleterious(0.04) possibly_damaging(0.686) TCGA-CG-4460-01 17 35615209 35615209 A G ACACA Silent p.F529F 0.42 TCGA-CG-4460-01 17 36707420 36707421 - G SRCIN1 Frame_Shift_Ins p.R978Pfs*12 0.42 TCGA-CG-4460-01 17 36874180 36874180 T C MLLT6 Missense_Mutation p.L639P 0.09 deleterious(0.02) unknown(0) TCGA-CG-4460-01 17 37370565 37370565 G A STAC2 Missense_Mutation p.R288W 0.38 deleterious(0.02) probably_damaging(0.998) TCGA-CG-4460-01 17 38182435 38182435 C T MED24 Silent p.E653E 0.20 TCGA-CG-4460-01 17 38282638 38282638 G A MSL1 Missense_Mutation p.R61Q 0.20 deleterious_low_confidence(0.01) probably_damaging(0.946) TCGA-CG-4460-01 17 38420997 38420997 C A WIPF2 Missense_Mutation p.P190H 0.20 deleterious(0) possibly_damaging(0.903) TCGA-CG-4460-01 17 38430089 38430089 C - WIPF2 Frame_Shift_Del p.P341Lfs*38 0.18 TCGA-CG-4460-01 17 38487581 38487581 G A RARA Silent p.P37P 0.21 TCGA-CG-4460-01 17 3921213 3921213 G A ZZEF1 Missense_Mutation p.R2520W 0.43 deleterious(0) possibly_damaging(0.753) TCGA-CG-4460-01 17 39471522 39471522 C A KRTAP17-1 3'UTR 0.35 TCGA-CG-4460-01 17 39506942 39506942 G A KRT33A Silent p.C26C 0.29 TCGA-CG-4460-01 17 40266961 40266961 A T KAT2A Missense_Mutation p.N656K 0.31 deleterious(0) possibly_damaging(0.547) TCGA-CG-4460-01 17 40369449 40369449 G A STAT5B Silent p.C401C 0.16 TCGA-CG-4460-01 17 40729486 40729486 C T PSMC3IP Missense_Mutation p.G43D 0.31 deleterious(0) probably_damaging(0.989) TCGA-CG-4460-01 17 40764454 40764454 C T TUBG1 Silent p.L137L 0.16 TCGA-CG-4460-01 17 40947807 40947807 G A WNK4 Missense_Mutation p.G1063R 0.45 tolerated(0.14) benign(0.391) TCGA-CG-4460-01 17 41004568 41004568 A G AOC3 Missense_Mutation p.D403G 0.30 deleterious(0) probably_damaging(0.995) TCGA-CG-4460-01 17 41170095 41170095 T C VAT1 Missense_Mutation p.T242A 0.38 tolerated(0.2) benign(0.329) TCGA-CG-4460-01 17 42171000 42171000 C A HDAC5 Missense_Mutation p.Q100H 0.36 deleterious(0.02) probably_damaging(0.984) TCGA-CG-4460-01 17 42254027 42254027 G T ASB16 Intron 0.30 TCGA-CG-4460-01 17 42337820 42337820 C T SLC4A1 Missense_Mutation p.R146Q 0.19 tolerated(0.2) benign(0.01) TCGA-CG-4460-01 17 42477060 42477060 G A GPATCH8 Silent p.C795C 0.36 TCGA-CG-4460-01 17 42636577 42636577 G A FZD2 Silent p.P507P 0.29 TCGA-CG-4460-01 17 43175800 43175800 G A NMT1 Missense_Mutation p.R255H 0.39 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 17 43314658 43314658 G A FMNL1 Missense_Mutation p.S245N 0.30 tolerated(1) unknown(0) TCGA-CG-4460-01 17 43481991 43481991 G A ARHGAP27 Silent p.S94S 0.33 TCGA-CG-4460-01 17 43515206 43515206 G A PLEKHM1 3'UTR 0.07 TCGA-CG-4460-01 17 44108975 44108975 C T KANSL1 Missense_Mutation p.R1062H 0.48 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-CG-4460-01 17 4451585 4451585 G A MYBBP1A Missense_Mutation p.T526M 0.34 deleterious(0.02) benign(0.021) TCGA-CG-4460-01 17 45008537 45008537 G A GOSR2 Missense_Mutation p.S56N 0.16 tolerated(0.33) benign(0.017) TCGA-CG-4460-01 17 4535278 4535278 G A ALOX15 Missense_Mutation p.T572M 0.34 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 17 45915469 45915469 A G SCRN2 Intron 0.27 TCGA-CG-4460-01 17 45917699 45917699 C T SCRN2 Missense_Mutation p.A72T 0.43 deleterious(0) possibly_damaging(0.788) TCGA-CG-4460-01 17 46023331 46023331 G T PNPO Missense_Mutation p.Q174H 0.23 deleterious(0) probably_damaging(0.992) TCGA-CG-4460-01 17 4621918 4621918 G A ARRB2 Missense_Mutation p.A261T 0.34 tolerated(0.43) probably_damaging(0.996) TCGA-CG-4460-01 17 47583814 47583814 G A NGFR Missense_Mutation p.R121H 0.41 deleterious(0.04) benign(0.013) TCGA-CG-4460-01 17 47684663 47684663 C A SPOP Missense_Mutation p.K262N 0.36 deleterious(0.03) benign(0.029) TCGA-CG-4460-01 17 48266814 48266814 C T COL1A1 Missense_Mutation p.R918H 0.35 unknown(0) TCGA-CG-4460-01 17 48275325 48275325 G A COL1A1 Silent p.G209G 0.51 TCGA-CG-4460-01 17 48433967 48433967 C - XYLT2 Frame_Shift_Del p.G529Afs*78 0.43 TCGA-CG-4460-01 17 4848102 4848102 G A RNF167 Missense_Mutation p.E282K 0.40 tolerated(0.24) benign(0.039) TCGA-CG-4460-01 17 4872938 4872938 C T CAMTA2 Missense_Mutation p.R1106Q 0.39 deleterious(0) possibly_damaging(0.686) TCGA-CG-4460-01 17 4875738 4875738 G - CAMTA2 Frame_Shift_Del p.P889Lfs*9 0.32 TCGA-CG-4460-01 17 48918374 48918374 G A WFIKKN2 Silent p.L575L 0.29 TCGA-CG-4460-01 17 4892783 4892783 C T INCA1 Missense_Mutation p.R112Q 0.25 tolerated(0.08) benign(0.252) TCGA-CG-4460-01 17 49052278 49052278 C T SPAG9 Missense_Mutation p.R1185H 0.31 deleterious(0.04) benign(0.022) TCGA-CG-4460-01 17 5289497 5289497 G A NUP88 3'UTR 0.16 TCGA-CG-4460-01 17 5383798 5383798 G A DERL2 Silent p.F144F 0.35 TCGA-CG-4460-01 17 559148 559148 G A VPS53 Missense_Mutation p.R140C 0.22 deleterious(0.03) possibly_damaging(0.448) TCGA-CG-4460-01 17 559154 559154 C T VPS53 Missense_Mutation p.A138T 0.24 deleterious(0) probably_damaging(0.999) TCGA-CG-4460-01 17 56280505 56280505 G A EPX Missense_Mutation p.R591Q 0.32 tolerated(0.66) benign(0.003) TCGA-CG-4460-01 17 56355357 56355357 G A MPO Silent p.S345S 0.49 TCGA-CG-4460-01 17 56572432 56572432 C A MTMR4 Missense_Mutation p.R1024M 0.17 deleterious(0) probably_damaging(0.999) TCGA-CG-4460-01 17 56657025 56657025 C A TEX14 Splice_Site p.X1126_splice 0.15 TCGA-CG-4460-01 17 59067459 59067459 G A BCAS3 Missense_Mutation p.R450Q 0.31 deleterious(0.04) possibly_damaging(0.836) TCGA-CG-4460-01 17 6023841 6023841 C T WSCD1 Missense_Mutation p.R530W 0.38 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 17 60522244 60522244 G A METTL2A Missense_Mutation p.G286R 0.40 deleterious(0) probably_damaging(0.999) TCGA-CG-4460-01 17 61498030 61498030 C T TANC2 Missense_Mutation p.R1563C 0.39 deleterious_low_confidence(0) probably_damaging(0.952) TCGA-CG-4460-01 17 62018341 62018341 C A SCN4A Missense_Mutation p.E1767D 0.44 tolerated_low_confidence(0.16) benign(0.026) TCGA-CG-4460-01 17 62529013 62529014 TA - CEP95 Frame_Shift_Del p.Y577Cfs*18 0.38 TCGA-CG-4460-01 17 63532595 63532595 G T AXIN2 Missense_Mutation p.L662M 0.43 tolerated(0.23) possibly_damaging(0.865) TCGA-CG-4460-01 17 6371643 6371643 C T PITPNM3 Missense_Mutation p.V598M 0.45 tolerated(0.19) benign(0.288) TCGA-CG-4460-01 17 64685129 64685129 C T PRKCA Silent p.D294D 0.21 TCGA-CG-4460-01 17 64880774 64880774 C T CACNG5 Missense_Mutation p.T189M 0.32 deleterious(0.02) benign(0.036) TCGA-CG-4460-01 17 65907557 65907557 A - BPTF Frame_Shift_Del p.N1187Mfs*3 0.08 TCGA-CG-4460-01 17 66873710 66873710 G A ABCA8 Silent p.Y1343Y 0.32 TCGA-CG-4460-01 17 67047247 67047247 G A ABCA9 Silent p.S7S 0.12 TCGA-CG-4460-01 17 67218780 67218780 T - ABCA10 Frame_Shift_Del p.K31Nfs*18 0.27 TCGA-CG-4460-01 17 68128528 68128528 C T KCNJ16 Silent p.G100G 0.36 TCGA-CG-4460-01 17 6945061 6945061 G A SLC16A11 Silent p.P451P 0.37 TCGA-CG-4460-01 17 7140010 7140010 G A PHF23 Missense_Mutation p.S79L 0.35 tolerated(0.06) possibly_damaging(0.848) TCGA-CG-4460-01 17 71410842 71410842 G A SDK2 Missense_Mutation p.R809C 0.26 deleterious(0) probably_damaging(0.993) TCGA-CG-4460-01 17 7226287 7226287 G A NEURL4 Missense_Mutation p.S858L 0.42 deleterious(0.04) possibly_damaging(0.457) TCGA-CG-4460-01 17 72352847 72352847 C T BTBD17 Silent p.L462L 0.09 TCGA-CG-4460-01 17 72436546 72436546 A G GPRC5C Missense_Mutation p.M256V 0.39 deleterious(0) possibly_damaging(0.661) TCGA-CG-4460-01 17 72540925 72540925 C A CD300C Missense_Mutation p.A75S 0.35 tolerated(0.21) benign(0.032) TCGA-CG-4460-01 17 73096200 73096200 G A SLC16A5 Missense_Mutation p.V148I 0.50 tolerated(0.32) benign(0.053) TCGA-CG-4460-01 17 73237565 73237565 G A GGA3 Missense_Mutation p.R288W 0.33 deleterious(0.01) benign(0.398) TCGA-CG-4460-01 17 7324658 7324658 G A SPEM1 Missense_Mutation p.G222S 0.54 tolerated(1) benign(0.001) TCGA-CG-4460-01 17 73263638 73263641 CTGT - MIF4GD Frame_Shift_Del p.D181Vfs*2 0.51 TCGA-CG-4460-01 17 73498689 73498689 G A CASKIN2 Silent p.T822T 0.40 TCGA-CG-4460-01 17 73627237 73627237 A G RECQL5 Missense_Mutation p.L514P 0.25 deleterious(0) probably_damaging(0.984) TCGA-CG-4460-01 17 73832710 73832710 C T UNC13D Missense_Mutation p.R414H 0.32 deleterious(0) probably_damaging(0.999) TCGA-CG-4460-01 17 7399276 7399276 C T POLR2A Missense_Mutation p.T37M 0.31 probably_damaging(0.996) TCGA-CG-4460-01 17 74035772 74035772 C T SRP68 3'UTR 0.48 TCGA-CG-4460-01 17 74289677 74289677 G A QRICH2 Silent p.P211P 0.28 TCGA-CG-4460-01 17 7468002 7468002 G A SENP3 Missense_Mutation p.R259H 0.26 deleterious(0.03) benign(0.099) TCGA-CG-4460-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.24 deleterious(0) probably_damaging(0.998) TCGA-CG-4460-01 17 7579365 7579365 C T TP53 Missense_Mutation p.G108S 0.40 deleterious(0.05) possibly_damaging(0.521) TCGA-CG-4460-01 17 7612612 7612612 T C EFNB3 Silent p.G247G 0.42 TCGA-CG-4460-01 17 76425216 76425217 - G DNAH17 Frame_Shift_Ins p.N4125Qfs*13 0.28 TCGA-CG-4460-01 17 76482323 76482323 C T DNAH17 Missense_Mutation p.A2348T 0.35 benign(0.173) TCGA-CG-4460-01 17 76547694 76547694 G A DNAH17 Nonsense_Mutation p.R772* 0.38 TCGA-CG-4460-01 17 76557929 76557929 G A DNAH17 Missense_Mutation p.A568V 0.44 benign(0.003) TCGA-CG-4460-01 17 7661859 7661859 C T DNAH2 Missense_Mutation p.R700C 0.18 benign(0.103) TCGA-CG-4460-01 17 7674180 7674180 C T DNAH2 Missense_Mutation p.R1431C 0.39 benign(0.178) TCGA-CG-4460-01 17 7683501 7683501 G A DNAH2 Missense_Mutation p.E1917K 0.37 benign(0.15) TCGA-CG-4460-01 17 76967606 76967606 A G LGALS3BP 3'UTR 0.41 TCGA-CG-4460-01 17 76968461 76968461 G A LGALS3BP Silent p.L319L 0.36 TCGA-CG-4460-01 17 77044096 77044096 G A C1QTNF1 Missense_Mutation p.A258T 0.12 deleterious(0) probably_damaging(0.999) TCGA-CG-4460-01 17 7752883 7752883 C T KDM6B Missense_Mutation p.R1093C 0.46 probably_damaging(0.967) TCGA-CG-4460-01 17 78172264 78172264 G - CARD14 Frame_Shift_Del p.D577Mfs*40 0.36 TCGA-CG-4460-01 17 78318681 78318681 G A RNF213 Silent p.T2182T 0.38 TCGA-CG-4460-01 17 78320756 78320756 C - RNF213 Frame_Shift_Del p.H2876Tfs*19 0.42 TCGA-CG-4460-01 17 7834358 7834358 G A TRAPPC1 Nonsense_Mutation p.R94* 0.41 TCGA-CG-4460-01 17 79095756 79095756 G A AATK Silent p.G660G 0.38 TCGA-CG-4460-01 17 7918329 7918329 C T GUCY2D Missense_Mutation p.T910I 0.31 deleterious(0.03) probably_damaging(0.997) TCGA-CG-4460-01 17 79411837 79411837 G A RP11-1055B8.7 Missense_Mutation p.A886T 0.50 benign(0.012) TCGA-CG-4460-01 17 79662032 79662032 G A HGS Missense_Mutation p.V352M 0.42 tolerated(0.08) benign(0.24) TCGA-CG-4460-01 17 79914789 79914789 G A NOTUM Missense_Mutation p.A286V 0.44 deleterious(0.01) possibly_damaging(0.842) TCGA-CG-4460-01 17 80044375 80044375 C T FASN Missense_Mutation p.G1163R 0.28 deleterious(0.03) benign(0.038) TCGA-CG-4460-01 17 80361850 80361850 G A OGFOD3 Missense_Mutation p.T221M 0.54 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 17 8160224 8160224 G A PFAS Missense_Mutation p.G340R 0.38 deleterious(0) probably_damaging(0.999) TCGA-CG-4460-01 17 8415786 8415786 T - MYH10 Frame_Shift_Del p.M979Cfs*12 0.30 TCGA-CG-4460-01 17 8701099 8701099 T C MFSD6L Missense_Mutation p.Y447C 0.36 tolerated(0.19) possibly_damaging(0.873) TCGA-CG-4460-01 17 8794082 8794082 G A PIK3R5 Silent p.D210D 0.32 TCGA-CG-4460-01 17 9808264 9808264 G A RCVRN Silent p.D78D 0.42 TCGA-CG-4460-01 18 12985340 12985340 C T SEH1L Intron 0.27 TCGA-CG-4460-01 18 13666696 13666696 C T FAM210A Missense_Mutation p.R201Q 0.27 deleterious(0.02) probably_damaging(0.918) TCGA-CG-4460-01 18 21662977 21662977 A - TTC39C Frame_Shift_Del p.E308Kfs*20 0.33 TCGA-CG-4460-01 18 24039773 24039773 G A KCTD1 Silent p.C142C 0.16 TCGA-CG-4460-01 18 29340651 29340651 G A SLC25A52 Missense_Mutation p.P2S 0.31 deleterious_low_confidence(0) benign(0.019) TCGA-CG-4460-01 18 29470763 29470763 G A TRAPPC8 Missense_Mutation p.P555S 0.18 deleterious(0.01) probably_damaging(0.997) TCGA-CG-4460-01 18 30804828 30804828 C T CCDC178 Missense_Mutation p.A577T 0.18 tolerated(1) benign(0.009) TCGA-CG-4460-01 18 321746 321747 CA - COLEC12 Frame_Shift_Del p.A709Wfs*14 0.16 TCGA-CG-4460-01 18 34853049 34853049 G A CELF4 Silent p.A293A 0.34 TCGA-CG-4460-01 18 3534216 3534216 G A DLGAP1 Missense_Mutation p.R819W 0.42 deleterious(0) possibly_damaging(0.806) TCGA-CG-4460-01 18 40503663 40503663 G A RIT2 Silent p.S100S 0.35 TCGA-CG-4460-01 18 43674991 43674991 C T ATP5A1 Intron 0.28 TCGA-CG-4460-01 18 44401028 44401028 T C PIAS2 Missense_Mutation p.M506V 0.07 tolerated(0.38) benign(0) TCGA-CG-4460-01 18 44595966 44595966 G A KATNAL2 Missense_Mutation p.V263I 0.37 tolerated(0.16) probably_damaging(0.946) TCGA-CG-4460-01 18 47811527 47811527 G A CXXC1 Missense_Mutation p.R253C 0.30 deleterious(0.01) possibly_damaging(0.649) TCGA-CG-4460-01 18 50278490 50278490 G A DCC Missense_Mutation p.R53Q 0.35 tolerated(0.07) benign(0.01) TCGA-CG-4460-01 18 51691001 51691001 G A MBD2 Missense_Mutation p.A334V 0.39 tolerated(0.13) benign(0.069) TCGA-CG-4460-01 18 51750459 51750459 G - MBD2 Frame_Shift_Del p.G158Dfs*7 0.30 TCGA-CG-4460-01 18 5397409 5397409 G A EPB41L3 Missense_Mutation p.T830M 0.34 tolerated(0.08) benign(0.012) TCGA-CG-4460-01 18 5428378 5428378 G T EPB41L3 Silent p.A333A 0.12 TCGA-CG-4460-01 18 56052755 56052755 C T NEDD4L Intron 0.34 TCGA-CG-4460-01 18 56204775 56204775 C T ALPK2 Missense_Mutation p.G882S 0.18 tolerated(0.64) benign(0.027) TCGA-CG-4460-01 18 59483219 59483219 C T RNF152 Missense_Mutation p.V160M 0.39 tolerated(0.11) benign(0.073) TCGA-CG-4460-01 18 60985399 60985399 C T BCL2 Silent p.S167S 0.33 TCGA-CG-4460-01 18 61067333 61067334 - T VPS4B Frame_Shift_Ins p.N246Kfs*2 0.32 TCGA-CG-4460-01 18 61264399 61264399 C T SERPINB13 Silent p.Y326Y 0.41 TCGA-CG-4460-01 18 63548083 63548083 C T CDH7 Nonsense_Mutation p.R771* 0.21 TCGA-CG-4460-01 18 64176286 64176286 C A CDH19 Nonsense_Mutation p.G592* 0.28 TCGA-CG-4460-01 18 67833395 67833395 A G RTTN Missense_Mutation p.L611P 0.42 deleterious(0) probably_damaging(0.98) TCGA-CG-4460-01 18 6977842 6977842 G C LAMA1 Missense_Mutation p.Q2077E 0.15 tolerated(1) benign(0.411) TCGA-CG-4460-01 18 72345057 72345057 T C ZNF407 Silent p.G694G 0.33 TCGA-CG-4460-01 18 74154389 74154389 C T ZNF516 Missense_Mutation p.A208T 0.47 tolerated(0.28) benign(0.085) TCGA-CG-4460-01 18 74593458 74593458 G A ZNF236 Silent p.P467P 0.32 TCGA-CG-4460-01 18 74607053 74607053 G A ZNF236 Missense_Mutation p.R499H 0.10 deleterious(0) probably_damaging(0.998) TCGA-CG-4460-01 18 74962969 74962969 C T GALR1 Silent p.G155G 0.36 TCGA-CG-4460-01 18 76752202 76752202 C T SALL3 Missense_Mutation p.R71W 0.34 deleterious(0) unknown(0) TCGA-CG-4460-01 18 76754820 76754820 C T SALL3 Silent p.A943A 0.31 TCGA-CG-4460-01 18 9563518 9563518 C T PPP4R1 Missense_Mutation p.R535H 0.29 deleterious(0.01) possibly_damaging(0.88) TCGA-CG-4460-01 19 10394744 10394744 C T ICAM1 Missense_Mutation p.R225W 0.24 deleterious(0.01) benign(0.171) TCGA-CG-4460-01 19 10446011 10446011 G - ICAM3 Frame_Shift_Del p.P223Rfs*21 0.45 TCGA-CG-4460-01 19 10464745 10464747 TGA - TYK2 In_Frame_Del p.I960del 0.74 TCGA-CG-4460-01 19 10597388 10597388 G A KEAP1 Silent p.G605G 0.61 TCGA-CG-4460-01 19 10909172 10909172 A G DNM2 Missense_Mutation p.Y449C 0.20 deleterious(0.01) benign(0.111) TCGA-CG-4460-01 19 11233905 11233905 C T LDLR Silent p.S732S 0.32 TCGA-CG-4460-01 19 11287398 11287398 G A KANK2 Missense_Mutation p.P547L 0.57 tolerated(0.1) benign(0.006) TCGA-CG-4460-01 19 11343992 11343992 G A DOCK6 Missense_Mutation p.R869C 0.61 tolerated(0.06) possibly_damaging(0.556) TCGA-CG-4460-01 19 11577463 11577463 G A ELAVL3 Silent p.G63G 0.63 TCGA-CG-4460-01 19 12502776 12502776 G A ZNF799 Missense_Mutation p.R146C 0.56 tolerated(1) benign(0.001) TCGA-CG-4460-01 19 12739124 12739125 AC - ZNF791 Frame_Shift_Del p.M263Dfs*7 0.30 TCGA-CG-4460-01 19 12774210 12774210 G A MAN2B1 Missense_Mutation p.P277L 0.47 deleterious(0) probably_damaging(0.978) TCGA-CG-4460-01 19 13084419 13084419 G A DAND5 Missense_Mutation p.E181K 0.66 deleterious(0.04) benign(0.26) TCGA-CG-4460-01 19 13246070 13246070 C A NACC1 Missense_Mutation p.L17M 0.33 deleterious(0) probably_damaging(0.999) TCGA-CG-4460-01 19 13386663 13386663 C T CACNA1A Splice_Site p.X1330_splice 0.63 TCGA-CG-4460-01 19 13882968 13882968 C - MRI1 Frame_Shift_Del p.H330Tfs*24 0.50 TCGA-CG-4460-01 19 13985588 13985588 G A NANOS3 5'Flank 0.19 TCGA-CG-4460-01 19 14031642 14031642 C T CC2D1A Silent p.D516D 0.24 TCGA-CG-4460-01 19 14046562 14046562 G - PODNL1 Frame_Shift_Del p.L163Sfs*19 0.37 TCGA-CG-4460-01 19 14070217 14070220 CCGA - DCAF15 Frame_Shift_Del p.S382Cfs*37 0.25 TCGA-CG-4460-01 19 14074439 14074439 G A RFX1 Silent p.G827G 0.36 TCGA-CG-4460-01 19 14593574 14593574 C T GIPC1 Missense_Mutation p.R72H 0.39 tolerated(0.07) benign(0.201) TCGA-CG-4460-01 19 15052604 15052604 T - OR7C2 Frame_Shift_Del p.F104Sfs*12 0.30 TCGA-CG-4460-01 19 15226182 15226182 C T ILVBL Missense_Mutation p.E594K 0.35 tolerated(0.35) benign(0.013) TCGA-CG-4460-01 19 15508372 15508372 C T AKAP8L Missense_Mutation p.G455D 0.15 tolerated(0.07) probably_damaging(0.998) TCGA-CG-4460-01 19 15582776 15582776 G A PGLYRP2 Missense_Mutation p.T423M 0.37 deleterious(0.05) benign(0.264) TCGA-CG-4460-01 19 15839443 15839443 C T OR10H2 Missense_Mutation p.A197V 0.30 tolerated(0.27) possibly_damaging(0.724) TCGA-CG-4460-01 19 16034771 16034771 G A CYP4F11 Missense_Mutation p.R257C 0.36 tolerated(0.06) benign(0.052) TCGA-CG-4460-01 19 16192765 16192765 G A TPM4 Missense_Mutation p.V95I 0.48 tolerated(0.09) benign(0.342) TCGA-CG-4460-01 19 16314282 16314282 C T AP1M1 Missense_Mutation p.R19W 0.37 deleterious(0) probably_damaging(0.999) TCGA-CG-4460-01 19 16976300 16976300 C T SIN3B Missense_Mutation p.P520L 0.15 tolerated(0.06) benign(0.015) TCGA-CG-4460-01 19 16986963 16986963 G A SIN3B Missense_Mutation p.R929H 0.19 tolerated(0.24) possibly_damaging(0.512) TCGA-CG-4460-01 19 17036131 17036131 G A CPAMD8 Missense_Mutation p.P1188L 0.36 deleterious(0) probably_damaging(0.969) TCGA-CG-4460-01 19 17337840 17337840 C - OCEL1 Frame_Shift_Del p.R97Afs*60 0.45 TCGA-CG-4460-01 19 17343253 17343253 G A NR2F6 Missense_Mutation p.R375C 0.20 deleterious(0) probably_damaging(0.999) TCGA-CG-4460-01 19 17343353 17343353 C T NR2F6 Silent p.A341A 0.18 TCGA-CG-4460-01 19 17844226 17844226 C T MAP1S Missense_Mutation p.R1005C 0.35 tolerated(0.08) probably_damaging(0.997) TCGA-CG-4460-01 19 17885236 17885236 G A FCHO1 Missense_Mutation p.R290H 0.35 deleterious(0.01) probably_damaging(0.941) TCGA-CG-4460-01 19 18273783 18273783 C T PIK3R2 Silent p.G372G 0.29 TCGA-CG-4460-01 19 18378235 18378235 C T KIAA1683 Missense_Mutation p.A39T 0.29 tolerated(0.34) benign(0.001) TCGA-CG-4460-01 19 18420513 18420513 G A LSM4 Silent p.G101G 0.10 TCGA-CG-4460-01 19 18897454 18897454 C T COMP Missense_Mutation p.R381H 0.43 tolerated(0.34) possibly_damaging(0.553) TCGA-CG-4460-01 19 19049618 19049618 C T HOMER3 Silent p.A30A 0.50 TCGA-CG-4460-01 19 19115211 19115211 C T SUGP2 Missense_Mutation p.D899N 0.31 tolerated(0.25) benign(0.206) TCGA-CG-4460-01 19 19329920 19329921 - T NCAN Frame_Shift_Ins p.L91Ffs*44 0.38 TCGA-CG-4460-01 19 19390106 19390106 C T SUGP1 Missense_Mutation p.G482S 0.33 tolerated(0.07) benign(0.23) TCGA-CG-4460-01 19 19655452 19655452 G A CILP2 Missense_Mutation p.E700K 0.40 tolerated(0.19) benign(0.036) TCGA-CG-4460-01 19 1978933 1978933 C T CSNK1G2 Missense_Mutation p.R175C 0.68 deleterious(0) probably_damaging(0.998) TCGA-CG-4460-01 19 22271354 22271354 C T ZNF257 Missense_Mutation p.R268W 0.24 tolerated(0.36) benign(0.005) TCGA-CG-4460-01 19 23990639 23990639 G A RPSAP58 5'UTR 0.44 TCGA-CG-4460-01 19 2853436 2853436 G T ZNF555 Missense_Mutation p.G458V 0.48 deleterious(0) benign(0.07) TCGA-CG-4460-01 19 2853909 2853909 A G ZNF555 Missense_Mutation p.R616G 0.51 tolerated_low_confidence(0.1) benign(0.011) TCGA-CG-4460-01 19 3251010 3251010 G C CELF5 Missense_Mutation p.R96T 0.44 deleterious(0) benign(0.001) TCGA-CG-4460-01 19 32930729 32930729 G C DPY19L3 Silent p.L256L 0.41 TCGA-CG-4460-01 19 33098606 33098606 C T ANKRD27 Missense_Mutation p.A770T 0.33 tolerated(0.08) possibly_damaging(0.798) TCGA-CG-4460-01 19 34857702 34857702 C T GPI Silent p.G115G 0.11 TCGA-CG-4460-01 19 35085142 35085142 T C SCGB2B2 Missense_Mutation p.N62D 0.11 tolerated_low_confidence(0.05) benign(0) TCGA-CG-4460-01 19 36113979 36113979 C T HAUS5 3'UTR 0.55 TCGA-CG-4460-01 19 36291029 36291029 C T PRODH2 Missense_Mutation p.V508M 0.38 tolerated(0.07) probably_damaging(0.999) TCGA-CG-4460-01 19 36297695 36297695 G A PRODH2 Missense_Mutation p.A315V 0.41 deleterious(0) probably_damaging(0.998) TCGA-CG-4460-01 19 36357214 36357214 C - KIRREL2 Frame_Shift_Del p.C652Afs*79 0.24 TCGA-CG-4460-01 19 36510207 36510207 G A CLIP3 Missense_Mutation p.T307M 0.40 deleterious(0.04) benign(0.093) TCGA-CG-4460-01 19 36526274 36526274 G A THAP8 3'UTR 0.44 TCGA-CG-4460-01 19 36594488 36594488 C T WDR62 Missense_Mutation p.S1253L 0.33 tolerated(0.2) benign(0.029) TCGA-CG-4460-01 19 36896513 36896513 T G ZFP82 Missense_Mutation p.K66N 0.30 deleterious(0.02) benign(0.061) TCGA-CG-4460-01 19 37210375 37210375 A - ZNF567 Frame_Shift_Del p.K221Nfs*17 0.38 TCGA-CG-4460-01 19 38861304 38861304 G A CATSPERG Missense_Mutation p.A1118T 0.35 tolerated(0.69) possibly_damaging(0.695) TCGA-CG-4460-01 19 3979814 3979814 T C EEF2 Missense_Mutation p.M533V 0.49 tolerated(0.1) possibly_damaging(0.633) TCGA-CG-4460-01 19 39860699 39860699 G A SAMD4B Missense_Mutation p.V201M 0.29 tolerated(0.26) benign(0.012) TCGA-CG-4460-01 19 39962263 39962263 C T SUPT5H Missense_Mutation p.R615C 0.51 deleterious(0) possibly_damaging(0.856) TCGA-CG-4460-01 19 39973790 39973790 G A TIMM50 Missense_Mutation p.D206N 0.33 tolerated(0.06) possibly_damaging(0.646) TCGA-CG-4460-01 19 4033135 4033135 C A PIAS4 Silent p.I315I 0.21 TCGA-CG-4460-01 19 40368809 40368809 G A FCGBP Missense_Mutation p.A4180V 0.13 possibly_damaging(0.787) TCGA-CG-4460-01 19 40433821 40433822 - G FCGBP Frame_Shift_Ins p.G150Rfs*68 0.32 TCGA-CG-4460-01 19 40520374 40520374 C T ZNF546 Silent p.Y399Y 0.18 TCGA-CG-4460-01 19 40882551 40882551 C T PLD3 Missense_Mutation p.A352V 0.26 tolerated(0.23) probably_damaging(0.923) TCGA-CG-4460-01 19 42091829 42091829 G A CEACAM21 Silent p.Q277Q 0.32 TCGA-CG-4460-01 19 42212588 42212588 A G CEA 5'UTR 0.43 TCGA-CG-4460-01 19 42482414 42482414 G A ATP1A3 Silent p.D578D 0.48 TCGA-CG-4460-01 19 42510873 42510873 G A GRIK5 Missense_Mutation p.S654L 0.33 deleterious(0) probably_damaging(0.999) TCGA-CG-4460-01 19 4251122 4251122 G A CCDC94 Missense_Mutation p.R75H 0.65 deleterious(0) possibly_damaging(0.645) TCGA-CG-4460-01 19 42818487 42818487 C T TMEM145 Missense_Mutation p.R62C 0.40 deleterious(0.01) possibly_damaging(0.613) TCGA-CG-4460-01 19 42838298 42838298 G - MEGF8 Frame_Shift_Del p.G166Vfs*53 0.27 TCGA-CG-4460-01 19 43244496 43244496 G A PSG3 Missense_Mutation p.T14I 0.42 tolerated(0.11) possibly_damaging(0.739) TCGA-CG-4460-01 19 43411249 43411249 C T PSG6 Silent p.A355A 0.35 TCGA-CG-4460-01 19 44514757 44514757 T C ZNF230 Missense_Mutation p.V189A 0.37 tolerated(0.07) probably_damaging(0.968) TCGA-CG-4460-01 19 44570344 44570344 C T ZNF223 Silent p.S121S 0.40 TCGA-CG-4460-01 19 44571192 44571192 A G ZNF223 Missense_Mutation p.D404G 0.18 deleterious(0.03) benign(0.103) TCGA-CG-4460-01 19 45262880 45262880 G - BCL3 3'UTR 0.22 TCGA-CG-4460-01 19 45766418 45766418 G A MARK4 Silent p.L100L 0.42 TCGA-CG-4460-01 19 46307526 46307526 T G RSPH6A Missense_Mutation p.Q546P 0.36 tolerated(0.16) benign(0.02) TCGA-CG-4460-01 19 46417555 46417555 C T NANOS2 Missense_Mutation p.G133R 0.49 deleterious(0) probably_damaging(0.999) TCGA-CG-4460-01 19 46498681 46498681 A G CCDC61 5'Flank 0.37 TCGA-CG-4460-01 19 47111779 47111779 G T CALM3 Missense_Mutation p.M73I 0.30 deleterious_low_confidence(0.02) benign(0.408) TCGA-CG-4460-01 19 47228739 47228739 G A STRN4 Missense_Mutation p.T479M 0.32 deleterious(0.02) possibly_damaging(0.629) TCGA-CG-4460-01 19 47570247 47570247 C T ZC3H4 Missense_Mutation p.R1093Q 0.33 unknown(0) TCGA-CG-4460-01 19 4793005 4793005 G A FEM1A Missense_Mutation p.R380H 0.35 deleterious(0) probably_damaging(0.999) TCGA-CG-4460-01 19 47969281 47969281 G A SLC8A2 Missense_Mutation p.T127M 0.12 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 19 49167960 49167960 G A NTN5 Silent p.G232G 0.20 TCGA-CG-4460-01 19 49216596 49216596 G - MAMSTR Frame_Shift_Del p.S393Afs*27 0.30 TCGA-CG-4460-01 19 49631327 49631329 AGA - PPFIA3 In_Frame_Del p.K67del 0.33 TCGA-CG-4460-01 19 50191543 50191543 G A PRMT1 3'UTR 0.32 TCGA-CG-4460-01 19 50310045 50310045 C T AP2A1 3'UTR 0.52 TCGA-CG-4460-01 19 50388000 50388000 C T TBC1D17 Missense_Mutation p.L477F 0.34 tolerated(0.77) benign(0.25) TCGA-CG-4460-01 19 50397580 50397580 C T IL4I1 Missense_Mutation p.R193H 0.31 tolerated(0.33) benign(0.013) TCGA-CG-4460-01 19 50436176 50436176 C T ATF5 Missense_Mutation p.R226C 0.35 deleterious(0) probably_damaging(0.994) TCGA-CG-4460-01 19 50475301 50475301 T C VRK3 3'Flank 0.20 TCGA-CG-4460-01 19 50548669 50548669 C T ZNF473 Silent p.N323N 0.38 TCGA-CG-4460-01 19 50666245 50666245 C T IZUMO2 Silent p.A69A 0.27 TCGA-CG-4460-01 19 50957548 50957548 C T MYBPC2 Missense_Mutation p.R646C 0.32 deleterious(0.01) benign(0.103) TCGA-CG-4460-01 19 5110672 5110672 G A KDM4B Missense_Mutation p.V320M 0.56 possibly_damaging(0.897) TCGA-CG-4460-01 19 51767344 51767344 G A SIGLECL1 Silent p.Q6Q 0.14 TCGA-CG-4460-01 19 51870355 51870355 A - CLDND2 3'UTR 0.30 TCGA-CG-4460-01 19 5225808 5225808 C T PTPRS Silent p.T808T 0.59 TCGA-CG-4460-01 19 52659206 52659206 G A ZNF836 Missense_Mutation p.T577M 0.36 deleterious(0.01) probably_damaging(0.994) TCGA-CG-4460-01 19 52942412 52942412 C T ZNF534 Nonsense_Mutation p.R580* 0.38 TCGA-CG-4460-01 19 53015473 53015473 G A ZNF578 3'Flank 0.40 TCGA-CG-4460-01 19 53612860 53612860 A G ZNF415 Silent p.H146H 0.26 TCGA-CG-4460-01 19 53645180 53645180 G A ZNF347 Missense_Mutation p.R302C 0.18 deleterious(0.03) benign(0.019) TCGA-CG-4460-01 19 53855133 53855133 G A ZNF845 Missense_Mutation p.R402H 0.34 tolerated(0.14) benign(0.029) TCGA-CG-4460-01 19 53886572 53886572 C T ZNF525 3'UTR 0.35 TCGA-CG-4460-01 19 54611543 54611543 G A TFPT Silent p.G144G 0.42 TCGA-CG-4460-01 19 54646870 54646870 G A CNOT3 Missense_Mutation p.C14Y 0.31 deleterious(0) probably_damaging(0.998) TCGA-CG-4460-01 19 54783463 54783463 G T LILRB2 Missense_Mutation p.P132H 0.35 deleterious(0) probably_damaging(0.987) TCGA-CG-4460-01 19 54822684 54822684 C A LILRA5 Nonsense_Mutation p.G238* 0.38 TCGA-CG-4460-01 19 54866902 54866902 G A LAIR1 Missense_Mutation p.T280M 0.35 tolerated(0.14) benign(0.006) TCGA-CG-4460-01 19 55148333 55148334 - G LILRB1 3'UTR 0.32 TCGA-CG-4460-01 19 55652654 55652654 C T TNNT1 Missense_Mutation p.R70H 0.29 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 19 55785912 55785912 G A HSPBP1 Missense_Mutation p.A165V 0.34 tolerated(0.06) possibly_damaging(0.643) TCGA-CG-4460-01 19 55823276 55823276 C T BRSK1 Intron 0.32 TCGA-CG-4460-01 19 56171886 56171887 - C U2AF2 Frame_Shift_Ins p.R81Pfs*10 0.32 TCGA-CG-4460-01 19 56189998 56189998 C T EPN1 Missense_Mutation p.S113L 0.32 deleterious(0) unknown(0) TCGA-CG-4460-01 19 56443465 56443465 A G NLRP13 Silent p.L71L 0.35 TCGA-CG-4460-01 19 56901845 56901845 G A ZNF582 Missense_Mutation p.A12V 0.38 deleterious(0.03) benign(0.05) TCGA-CG-4460-01 19 56953616 56953616 C T ZNF667 Missense_Mutation p.G250R 0.29 tolerated(0.06) benign(0.015) TCGA-CG-4460-01 19 57037374 57037374 G A ZNF471 3'UTR 0.07 TCGA-CG-4460-01 19 57133303 57133303 C T ZNF71 Silent p.C216C 0.34 TCGA-CG-4460-01 19 57832147 57832147 C T ZNF543 5'UTR 0.24 TCGA-CG-4460-01 19 57984945 57984945 G A ZNF772 Silent p.H389H 0.33 TCGA-CG-4460-01 19 58016049 58016049 G A ZNF773 Missense_Mutation p.V20M 0.36 deleterious(0.02) probably_damaging(1) TCGA-CG-4460-01 19 58371174 58371174 C T ZNF587 Missense_Mutation p.A465V 0.32 tolerated(0.06) benign(0.019) TCGA-CG-4460-01 19 58385236 58385236 C T ZNF814 Missense_Mutation p.V508I 0.43 tolerated(0.44) benign(0.006) TCGA-CG-4460-01 19 58564970 58564970 C T ZSCAN1 Missense_Mutation p.R260C 0.34 tolerated(0.07) benign(0.002) TCGA-CG-4460-01 19 58574815 58574815 A G ZNF135 Silent p.G66G 0.16 TCGA-CG-4460-01 19 58921369 58921369 C T ZNF584 Missense_Mutation p.S27F 0.15 deleterious(0) probably_damaging(0.993) TCGA-CG-4460-01 19 6001988 6001988 C T RFX2 Missense_Mutation p.R566Q 0.65 tolerated(0.2) benign(0.014) TCGA-CG-4460-01 19 6707512 6707512 C T C3 Missense_Mutation p.R671H 0.50 deleterious(0.01) benign(0.022) TCGA-CG-4460-01 19 6760665 6760665 G A SH2D3A Missense_Mutation p.R135W 0.73 deleterious(0.03) benign(0) TCGA-CG-4460-01 19 757886 757886 C T MISP Missense_Mutation p.R314W 0.63 deleterious(0.01) possibly_damaging(0.785) TCGA-CG-4460-01 19 7964277 7964277 G A LRRC8E Silent p.T290T 0.43 TCGA-CG-4460-01 19 7987660 7987660 G A SNAPC2 3'UTR 0.33 TCGA-CG-4460-01 19 8553714 8553714 C T HNRNPM Silent p.D723D 0.58 TCGA-CG-4460-01 19 9026243 9026243 C T MUC16 Missense_Mutation p.R12248H 0.58 benign(0.059) TCGA-CG-4460-01 19 9063743 9063743 T C MUC16 Silent p.A7901A 0.22 TCGA-CG-4460-01 19 9066225 9066225 A T MUC16 Missense_Mutation p.L7074H 0.22 unknown(0) TCGA-CG-4460-01 19 9296685 9296685 C T OR7D2 Silent p.C76C 0.60 TCGA-CG-4460-01 1 101705000 101705000 G A S1PR1 Missense_Mutation p.G154R 0.45 tolerated(0.08) benign(0.036) TCGA-CG-4460-01 1 10357036 10357036 C A KIF1B Missense_Mutation p.P602H 0.17 deleterious(0) probably_damaging(0.999) TCGA-CG-4460-01 1 10720568 10720568 G A CASZ1 Silent p.Y177Y 0.22 TCGA-CG-4460-01 1 108735270 108735270 G A SLC25A24 Intron 0.26 TCGA-CG-4460-01 1 109359793 109359793 T - AKNAD1 Frame_Shift_Del p.K752Nfs*6 0.15 TCGA-CG-4460-01 1 109801093 109801093 T C CELSR2 Missense_Mutation p.V1117A 0.18 deleterious(0.02) benign(0.35) TCGA-CG-4460-01 1 11073800 11073800 C T TARDBP Missense_Mutation p.R6W 0.28 tolerated(0.08) benign(0.014) TCGA-CG-4460-01 1 11082186 11082186 G A TARDBP Silent p.A240A 0.42 TCGA-CG-4460-01 1 110919614 110919614 G A SLC16A4 Silent p.A400A 0.57 TCGA-CG-4460-01 1 111734910 111734910 G A DENND2D Missense_Mutation p.A275V 0.42 tolerated(1) possibly_damaging(0.823) TCGA-CG-4460-01 1 1120577 1120577 C T TTLL10 Intron 0.20 TCGA-CG-4460-01 1 112269948 112269948 C A FAM212B Missense_Mutation p.G179V 0.32 tolerated(0.09) possibly_damaging(0.779) TCGA-CG-4460-01 1 112318802 112318802 G A KCND3 Missense_Mutation p.A622V 0.19 tolerated_low_confidence(0.34) possibly_damaging(0.499) TCGA-CG-4460-01 1 112323324 112323324 C T KCND3 Silent p.A453A 0.44 TCGA-CG-4460-01 1 113666509 113666509 G A LRIG2 Missense_Mutation p.R995Q 0.45 tolerated(0.22) benign(0.001) TCGA-CG-4460-01 1 114380685 114380685 C T PTPN22 Missense_Mutation p.R446Q 0.30 tolerated(0.05) benign(0.392) TCGA-CG-4460-01 1 114942184 114942184 G A TRIM33 Silent p.T1005T 0.22 TCGA-CG-4460-01 1 116226625 116226625 G A VANGL1 Missense_Mutation p.R336K 0.42 tolerated(0.08) benign(0.024) TCGA-CG-4460-01 1 116940562 116940562 G A ATP1A1 Missense_Mutation p.E676K 0.22 tolerated(0.13) benign(0.012) TCGA-CG-4460-01 1 11861314 11861314 G A MTHFR Missense_Mutation p.H127Y 0.39 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 1 120438116 120438116 T - ADAM30 Frame_Shift_Del p.S282Vfs*3 0.19 TCGA-CG-4460-01 1 12067172 12067172 C T MFN2 Silent p.Y645Y 0.37 TCGA-CG-4460-01 1 12353588 12353588 C T VPS13D Missense_Mutation p.R1954W 0.14 possibly_damaging(0.648) TCGA-CG-4460-01 1 13668962 13668962 G - PRAMEF14 Frame_Shift_Del p.C457Afs*39 0.19 TCGA-CG-4460-01 1 1421171 1421171 C T ATAD3B Missense_Mutation p.R306W 0.50 deleterious(0) probably_damaging(0.968) TCGA-CG-4460-01 1 1424620 1424620 G A ATAD3B Missense_Mutation p.A435T 0.33 tolerated(0.07) probably_damaging(0.915) TCGA-CG-4460-01 1 143767460 143767460 C T PPIAL4G Missense_Mutation p.G130D 0.03 deleterious_low_confidence(0.02) possibly_damaging(0.823) TCGA-CG-4460-01 1 144917907 144917907 C T PDE4DIP Missense_Mutation p.R460Q 0.07 tolerated(0.92) benign(0.022) TCGA-CG-4460-01 1 145474257 145474258 CT - ANKRD34A Frame_Shift_Del p.R313Pfs*37 0.14 TCGA-CG-4460-01 1 147095879 147095879 C T BCL9 Missense_Mutation p.R1134W 0.14 deleterious(0.01) probably_damaging(0.982) TCGA-CG-4460-01 1 147400597 147400597 C T GPR89B 5'UTR 0.10 TCGA-CG-4460-01 1 149783804 149783806 CTT - HIST2H2BF In_Frame_Del p.K25del 0.26 TCGA-CG-4460-01 1 149858829 149858829 C T HIST2H2AC Missense_Mutation p.T102I 0.11 deleterious_low_confidence(0.02) probably_damaging(0.952) TCGA-CG-4460-01 1 150266770 150266770 G T MRPS21 5'UTR 0.10 TCGA-CG-4460-01 1 150477199 150477199 G - TARS2 Frame_Shift_Del p.K606Nfs*46 0.20 TCGA-CG-4460-01 1 150679276 150679276 G - HORMAD1 Frame_Shift_Del p.P186Qfs*25 0.30 TCGA-CG-4460-01 1 150921647 150921647 C T SETDB1 Silent p.T439T 0.08 TCGA-CG-4460-01 1 151110553 151110553 C T SEMA6C Silent p.A192A 0.09 TCGA-CG-4460-01 1 151112543 151112543 G A SEMA6C Missense_Mutation p.R48W 0.72 deleterious(0) possibly_damaging(0.835) TCGA-CG-4460-01 1 151502454 151502454 C T CGN Missense_Mutation p.R726W 0.35 deleterious(0) probably_damaging(0.992) TCGA-CG-4460-01 1 151554167 151554167 G A TUFT1 Missense_Mutation p.R386Q 0.66 deleterious(0) unknown(0) TCGA-CG-4460-01 1 152059548 152059548 C A TCHHL1 Missense_Mutation p.G204C 0.14 deleterious(0.02) possibly_damaging(0.525) TCGA-CG-4460-01 1 152080033 152080033 C T TCHH Missense_Mutation p.R1887H 0.11 possibly_damaging(0.522) TCGA-CG-4460-01 1 152083992 152083992 C G TCHH Silent p.L567L 0.03 TCGA-CG-4460-01 1 152187774 152187774 C T HRNR Missense_Mutation p.E2111K 0.11 unknown(0) TCGA-CG-4460-01 1 152552219 152552219 C T LCE3D Missense_Mutation p.R65H 0.65 tolerated_low_confidence(0.17) unknown(0) TCGA-CG-4460-01 1 152671467 152671467 T A LCE2A Silent p.P30P 0.21 TCGA-CG-4460-01 1 152785077 152785077 G A LCE1B Missense_Mutation p.C52Y 0.11 tolerated_low_confidence(0.11) unknown(0) TCGA-CG-4460-01 1 15386753 15386753 G A KAZN Silent p.P334P 0.21 TCGA-CG-4460-01 1 153914361 153914361 G A DENND4B Missense_Mutation p.R347C 0.11 tolerated(0.08) possibly_damaging(0.616) TCGA-CG-4460-01 1 153947152 153947152 T C JTB 3'UTR 0.68 TCGA-CG-4460-01 1 154125290 154125290 A G NUP210L Missense_Mutation p.C88R 0.19 deleterious(0) possibly_damaging(0.895) TCGA-CG-4460-01 1 154296101 154296101 G A AQP10 Missense_Mutation p.A176T 0.13 deleterious(0) probably_damaging(0.977) TCGA-CG-4460-01 1 154296823 154296823 C A AQP10 Missense_Mutation p.A258D 0.16 tolerated(0.2) possibly_damaging(0.653) TCGA-CG-4460-01 1 154990967 154990967 C T ZBTB7B 3'Flank 0.12 TCGA-CG-4460-01 1 155032782 155032782 C T ADAM15 Nonsense_Mutation p.R724* 0.63 TCGA-CG-4460-01 1 155172645 155172646 - G THBS3 Frame_Shift_Ins p.G306Wfs*11 0.32 TCGA-CG-4460-01 1 155223727 155223727 G A FAM189B Missense_Mutation p.R146W 0.13 deleterious(0.01) probably_damaging(0.997) TCGA-CG-4460-01 1 155239316 155239316 C T CLK2 Missense_Mutation p.R121Q 0.20 tolerated(0.07) probably_damaging(0.99) TCGA-CG-4460-01 1 155257023 155257023 C T HCN3 Missense_Mutation p.R513C 0.67 deleterious(0.01) probably_damaging(0.971) TCGA-CG-4460-01 1 155257601 155257601 C T HCN3 Missense_Mutation p.R558C 0.14 tolerated(0.13) possibly_damaging(0.644) TCGA-CG-4460-01 1 155584461 155584461 G A MSTO1 3'UTR 0.54 TCGA-CG-4460-01 1 155883817 155883817 G T KIAA0907 3'UTR 0.11 TCGA-CG-4460-01 1 156030994 156030994 C T RAB25 5'UTR 0.21 TCGA-CG-4460-01 1 156039993 156039993 G A RAB25 Missense_Mutation p.R186Q 0.68 tolerated_low_confidence(0.62) benign(0.001) TCGA-CG-4460-01 1 156108466 156108467 - G LMNA Frame_Shift_Ins p.S632Qfs*72 0.13 TCGA-CG-4460-01 1 156228909 156228909 C T SMG5 Missense_Mutation p.A777T 0.11 tolerated(1) benign(0.001) TCGA-CG-4460-01 1 156262696 156262696 C T C1orf85 3'UTR 0.63 TCGA-CG-4460-01 1 1563197 1563197 C T MIB2 Silent p.D671D 0.23 TCGA-CG-4460-01 1 156533003 156533003 G A IQGAP3 Nonsense_Mutation p.R241* 0.15 TCGA-CG-4460-01 1 156779465 156779465 G A SH2D2A Silent p.A244A 0.73 TCGA-CG-4460-01 1 157485520 157485520 G A FCRL5 Missense_Mutation p.A960V 0.18 tolerated(0.14) benign(0.002) TCGA-CG-4460-01 1 158656307 158656307 T - SPTA1 Frame_Shift_Del p.M1? 0.12 TCGA-CG-4460-01 1 158687391 158687391 T C OR6K3 Missense_Mutation p.N172S 0.70 deleterious(0.03) possibly_damaging(0.902) TCGA-CG-4460-01 1 158736247 158736247 C A OR6N1 Missense_Mutation p.A76S 0.10 tolerated(0.83) benign(0.066) TCGA-CG-4460-01 1 158746934 158746934 G T OR6N2 Silent p.S164S 0.12 TCGA-CG-4460-01 1 159021882 159021882 A G IFI16 Silent p.V637V 0.33 TCGA-CG-4460-01 1 159163698 159163698 A C CADM3 Missense_Mutation p.T221P 0.10 deleterious(0) probably_damaging(0.997) TCGA-CG-4460-01 1 16063318 16063318 C T SLC25A34 Missense_Mutation p.A113V 0.52 deleterious(0.01) possibly_damaging(0.621) TCGA-CG-4460-01 1 16069534 16069534 G A TMEM82 Missense_Mutation p.E61K 0.23 tolerated(0.12) possibly_damaging(0.503) TCGA-CG-4460-01 1 160922427 160922427 C T ITLN2 Missense_Mutation p.R59H 0.14 tolerated(0.45) possibly_damaging(0.553) TCGA-CG-4460-01 1 161017913 161017913 C T ARHGAP30 Silent p.P966P 0.10 TCGA-CG-4460-01 1 161018111 161018111 A G ARHGAP30 Silent p.P900P 0.11 TCGA-CG-4460-01 1 161039378 161039378 C T ARHGAP30 Missense_Mutation p.A13T 0.12 tolerated(0.22) benign(0.018) TCGA-CG-4460-01 1 161049470 161049470 C T PVRL4 Missense_Mutation p.A117T 0.30 tolerated(0.54) benign(0.16) TCGA-CG-4460-01 1 161167854 161167854 G A ADAMTS4 Silent p.S188S 0.14 TCGA-CG-4460-01 1 161206378 161206378 G A NR1I3 5'UTR 0.08 TCGA-CG-4460-01 1 161654816 161654816 G A RPL31P11 RNA 0.16 TCGA-CG-4460-01 1 161693278 161693278 C T FCRLB Silent p.S58S 0.14 TCGA-CG-4460-01 1 161722911 161722911 A C DUSP12 Missense_Mutation p.S241R 0.08 tolerated(0.05) benign(0.439) TCGA-CG-4460-01 1 161761995 161761995 C T ATF6 Missense_Mutation p.A189V 0.13 tolerated(1) benign(0.001) TCGA-CG-4460-01 1 161967626 161967626 C T OLFML2B Missense_Mutation p.R488Q 0.12 tolerated(0.07) benign(0.245) TCGA-CG-4460-01 1 162302876 162302876 C T NOS1AP Silent p.S138S 0.28 TCGA-CG-4460-01 1 16525156 16525156 C T ARHGEF19 Missense_Mutation p.A779T 0.32 deleterious(0.02) probably_damaging(0.998) TCGA-CG-4460-01 1 165380320 165380320 G A RXRG Nonsense_Mutation p.R217* 0.10 TCGA-CG-4460-01 1 166818865 166818865 G A POGK Missense_Mutation p.R350H 0.71 tolerated(0.13) probably_damaging(0.964) TCGA-CG-4460-01 1 166890585 166890585 G A ILDR2 Missense_Mutation p.R415W 0.09 deleterious(0) possibly_damaging(0.762) TCGA-CG-4460-01 1 166960642 166960642 C - MAEL Frame_Shift_Del p.P85Qfs*20 0.10 TCGA-CG-4460-01 1 167865906 167865906 G - ADCY10 Frame_Shift_Del p.N223Ifs*27 0.30 TCGA-CG-4460-01 1 16907917 16914222 1:16907917-16914222 - NBPF1 large deletion p.X188_splice 0.08 TCGA-CG-4460-01 1 169492452 169492453 - GTTCC F5 Frame_Shift_Ins p.S2011Gfs*7 0.33 TCGA-CG-4460-01 1 169529841 169529841 G A F5 Silent p.I179I 0.71 TCGA-CG-4460-01 1 169701061 169701061 G A SELE Silent p.C148C 0.07 TCGA-CG-4460-01 1 169796914 169796914 C T C1orf112 Missense_Mutation p.P354S 0.09 tolerated(0.44) benign(0.182) TCGA-CG-4460-01 1 169822808 169822809 - A C1orf112 3'UTR 0.22 TCGA-CG-4460-01 1 169993641 169993641 T C KIFAP3 Missense_Mutation p.D313G 0.05 tolerated(0.12) benign(0.009) TCGA-CG-4460-01 1 17298923 17298923 C T CROCC Silent p.S2012S 0.47 TCGA-CG-4460-01 1 173494007 173494007 G A SLC9C2 Missense_Mutation p.R809W 0.14 deleterious(0) possibly_damaging(0.891) TCGA-CG-4460-01 1 17431553 17431553 C T PADI2 Silent p.A32A 0.49 TCGA-CG-4460-01 1 174983885 174983885 G A MRPS14 Missense_Mutation p.R103C 0.17 deleterious(0) probably_damaging(0.989) TCGA-CG-4460-01 1 175116086 175116086 G T TNN Missense_Mutation p.W1260L 0.26 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 1 178514876 178514887 AACAGTGATCTT - C1ORF220 In_Frame_Del p.N88_L91del 0.28 TCGA-CG-4460-01 1 178834841 178834841 C T ANGPTL1 Missense_Mutation p.G24E 0.11 tolerated(0.23) benign(0) TCGA-CG-4460-01 1 179317995 179317995 C T SOAT1 Missense_Mutation p.T411M 0.34 deleterious(0) probably_damaging(0.992) TCGA-CG-4460-01 1 179851982 179851983 - C TOR1AIP1 Frame_Shift_Ins p.Q117Pfs*42 0.20 TCGA-CG-4460-01 1 180240614 180240614 G A LHX4 Missense_Mutation p.R184Q 0.70 deleterious(0.02) benign(0.316) TCGA-CG-4460-01 1 182852698 182852698 C - DHX9 Frame_Shift_Del p.L1065Cfs*20 0.14 TCGA-CG-4460-01 1 183869285 183869285 G A RGL1 Missense_Mutation p.G446D 0.10 deleterious(0) probably_damaging(0.999) TCGA-CG-4460-01 1 185173972 185173972 G T SWT1 Missense_Mutation p.A604S 0.65 deleterious(0) possibly_damaging(0.906) TCGA-CG-4460-01 1 186023068 186023068 C T HMCN1 Missense_Mutation p.A2271V 0.10 possibly_damaging(0.716) TCGA-CG-4460-01 1 186052065 186052066 - A HMCN1 Frame_Shift_Ins p.Y2955Ifs*3 0.31 TCGA-CG-4460-01 1 186088422 186088422 A G HMCN1 Missense_Mutation p.H3983R 0.11 benign(0.006) TCGA-CG-4460-01 1 186277936 186277936 A - PRG4 Frame_Shift_Del p.K1030Nfs*14 0.12 TCGA-CG-4460-01 1 18691983 18691983 C T IGSF21 Silent p.V269V 0.20 TCGA-CG-4460-01 1 190250845 190250845 A G BRINP3 Missense_Mutation p.V91A 0.10 tolerated(0.17) benign(0.253) TCGA-CG-4460-01 1 19438952 19438952 G A UBR4 Intron 0.23 TCGA-CG-4460-01 1 19478961 19478961 G A UBR4 Missense_Mutation p.T2281M 0.26 benign(0.163) TCGA-CG-4460-01 1 19487642 19487642 C A UBR4 Splice_Site p.X1726_splice 0.20 TCGA-CG-4460-01 1 19653785 19653785 C T PQLC2 Missense_Mutation p.T228M 0.15 tolerated(0.15) benign(0.225) TCGA-CG-4460-01 1 196694254 196694254 G T CFH Missense_Mutation p.R567I 0.08 tolerated(0.13) benign(0.032) TCGA-CG-4460-01 1 197073232 197073232 T - ASPM Frame_Shift_Del p.I1717* 0.44 TCGA-CG-4460-01 1 197091623 197091623 T C ASPM Missense_Mutation p.T1165A 0.18 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 1 197094038 197094038 T - ASPM Frame_Shift_Del p.T1044Lfs*8 0.13 TCGA-CG-4460-01 1 197396662 197396662 C A CRB1 Missense_Mutation p.T736N 0.12 tolerated(1) benign(0) TCGA-CG-4460-01 1 198288596 198288596 G A NEK7 Missense_Mutation p.V285I 0.12 tolerated(1) benign(0.002) TCGA-CG-4460-01 1 198498237 198498240 TATC - ATP6V1G3 Frame_Shift_Del p.D52Kfs*5 0.11 TCGA-CG-4460-01 1 198498278 198498278 T C ATP6V1G3 Missense_Mutation p.E39G 0.07 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 1 198685924 198685924 C T PTPRC Missense_Mutation p.R469C 0.12 deleterious(0.01) probably_damaging(0.994) TCGA-CG-4460-01 1 198703545 198703545 A C PTPRC Missense_Mutation p.E756D 0.35 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 1 20082244 20082244 C T TMCO4 Missense_Mutation p.R133Q 0.40 deleterious(0) probably_damaging(0.99) TCGA-CG-4460-01 1 201030493 201030494 - A CACNA1S Frame_Shift_Ins p.A1053Cfs*23 0.10 TCGA-CG-4460-01 1 201041891 201041891 T A CACNA1S Missense_Mutation p.D740V 0.08 deleterious(0.01) benign(0.236) TCGA-CG-4460-01 1 201187676 201187676 C T IGFN1 Missense_Mutation p.A3263V 0.10 benign(0.055) TCGA-CG-4460-01 1 202092168 202092168 C - GPR37L1 Frame_Shift_Del p.L28Cfs*75 0.48 TCGA-CG-4460-01 1 202718153 202718153 C T KDM5B Missense_Mutation p.V646I 0.29 tolerated(0.16) possibly_damaging(0.501) TCGA-CG-4460-01 1 202976946 202976946 T C TMEM183A Missense_Mutation p.S52P 0.13 deleterious(0.03) possibly_damaging(0.65) TCGA-CG-4460-01 1 202977912 202977913 - A TMEM183A Frame_Shift_Ins p.K117Efs*32 0.14 TCGA-CG-4460-01 1 203316893 203316893 C T FMOD Missense_Mutation p.R169Q 0.14 tolerated(0.19) benign(0.122) TCGA-CG-4460-01 1 203798998 203798998 G A ZC3H11A Missense_Mutation p.R198Q 0.68 tolerated(0.2) possibly_damaging(0.53) TCGA-CG-4460-01 1 204091104 204091104 C - SOX13 Frame_Shift_Del p.L286Cfs*8 0.13 TCGA-CG-4460-01 1 204124992 204124992 C T REN Missense_Mutation p.G339R 0.17 deleterious(0) probably_damaging(0.939) TCGA-CG-4460-01 1 204587238 204587238 C T LRRN2 Missense_Mutation p.R628H 0.76 tolerated(0.54) benign(0.001) TCGA-CG-4460-01 1 205034949 205034949 C T CNTN2 Silent p.N576N 0.08 TCGA-CG-4460-01 1 205131330 205131330 C T DSTYK Missense_Mutation p.R551H 0.12 tolerated(0.06) possibly_damaging(0.835) TCGA-CG-4460-01 1 205632102 205632102 G A SLC45A3 Missense_Mutation p.R273W 0.22 deleterious(0) possibly_damaging(0.61) TCGA-CG-4460-01 1 205687569 205687569 G A NUCKS1 Missense_Mutation p.R191C 0.12 deleterious(0) probably_damaging(0.942) TCGA-CG-4460-01 1 205890727 205890727 G A SLC26A9 Silent p.F674F 0.10 TCGA-CG-4460-01 1 207196179 207196179 G A C1orf116 Silent p.S310S 0.70 TCGA-CG-4460-01 1 207647066 207647066 G T CR2 Nonsense_Mutation p.E719* 0.23 TCGA-CG-4460-01 1 207791465 207791465 C T CR1 Silent p.H2313H 0.69 TCGA-CG-4460-01 1 20991166 20991166 G - KIF17 Frame_Shift_Del p.R1001Gfs*40 0.25 TCGA-CG-4460-01 1 20998611 20998611 G A KIF17 Missense_Mutation p.R848C 0.39 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 1 210971061 210971061 G A KCNH1 Silent p.C568C 0.11 TCGA-CG-4460-01 1 21186948 21186948 C A EIF4G3 Missense_Mutation p.E1008D 0.45 tolerated(0.09) benign(0.013) TCGA-CG-4460-01 1 212274406 212274406 G A DTL Missense_Mutation p.G692R 0.11 deleterious(0.01) benign(0.002) TCGA-CG-4460-01 1 212799662 212799662 G A FAM71A Silent p.P481P 0.13 TCGA-CG-4460-01 1 214171008 214171008 G A PROX1 Missense_Mutation p.R377H 0.68 tolerated(0.15) possibly_damaging(0.703) TCGA-CG-4460-01 1 215848809 215848809 C T USH2A Silent p.L4148L 0.15 TCGA-CG-4460-01 1 216073535 216073535 C T USH2A Silent p.S2492S 0.11 TCGA-CG-4460-01 1 216144000 216144000 T C USH2A Silent p.A2308A 0.10 TCGA-CG-4460-01 1 218614838 218614838 C T TGFB2 3'UTR 0.90 TCGA-CG-4460-01 1 220356238 220356238 T C RAB3GAP2 Silent p.E678E 0.11 TCGA-CG-4460-01 1 220406197 220406197 T A RAB3GAP2 Missense_Mutation p.T42S 0.10 tolerated(0.97) benign(0.002) TCGA-CG-4460-01 1 22169274 22169274 C T HSPG2 Missense_Mutation p.A2967T 0.26 benign(0.117) TCGA-CG-4460-01 1 222801059 222801059 A - MIA3 Frame_Shift_Del p.N168Tfs*15 0.12 TCGA-CG-4460-01 1 223178178 223178178 A - DISP1 Frame_Shift_Del p.K1148Nfs*26 0.13 TCGA-CG-4460-01 1 224377351 224377351 T A DEGS1 Missense_Mutation p.L52H 0.10 deleterious(0.01) possibly_damaging(0.67) TCGA-CG-4460-01 1 226568804 226568804 G A PARP1 Missense_Mutation p.T422M 0.09 deleterious(0.04) possibly_damaging(0.505) TCGA-CG-4460-01 1 226923661 226923661 C - ITPKB Frame_Shift_Del p.G500Vfs*58 0.33 TCGA-CG-4460-01 1 228475407 228475407 G A OBSCN Missense_Mutation p.R3615Q 0.73 benign(0.037) TCGA-CG-4460-01 1 228562445 228562445 G A OBSCN Missense_Mutation p.R8509Q 0.67 probably_damaging(0.975) TCGA-CG-4460-01 1 228612739 228612739 C T HIST3H3 Silent p.A96A 0.74 TCGA-CG-4460-01 1 229666124 229666124 C A ABCB10 Missense_Mutation p.Q489H 0.11 deleterious(0.02) benign(0.008) TCGA-CG-4460-01 1 22974271 22974271 G A C1QC Missense_Mutation p.D245N 0.22 deleterious(0.04) benign(0.022) TCGA-CG-4460-01 1 230805169 230805169 C T COG2 Missense_Mutation p.T221M 0.12 deleterious(0) possibly_damaging(0.762) TCGA-CG-4460-01 1 231042638 231042638 T C TTC13 3'UTR 0.13 TCGA-CG-4460-01 1 232579380 232579380 G A SIPA1L2 Silent p.S1135S 0.11 TCGA-CG-4460-01 1 232619595 232619595 C T SIPA1L2 Missense_Mutation p.G642S 0.20 deleterious(0.03) probably_damaging(1) TCGA-CG-4460-01 1 234510029 234510029 G - COA6 Frame_Shift_Del p.A61Pfs*9 0.08 TCGA-CG-4460-01 1 234565961 234565961 C T TARBP1 Silent p.E827E 0.08 TCGA-CG-4460-01 1 235386558 235386558 G A ARID4B Nonsense_Mutation p.R330* 0.09 TCGA-CG-4460-01 1 235602175 235602175 A - TBCE Frame_Shift_Del p.N405Tfs*19 0.12 TCGA-CG-4460-01 1 235860532 235860532 T C LYST Missense_Mutation p.Y3472C 0.10 deleterious(0) possibly_damaging(0.792) TCGA-CG-4460-01 1 236145041 236145041 G A NID1 Missense_Mutation p.R1033C 0.70 deleterious(0) probably_damaging(0.999) TCGA-CG-4460-01 1 236180546 236180546 G A NID1 Missense_Mutation p.S719L 0.13 tolerated(0.26) benign(0.014) TCGA-CG-4460-01 1 236384168 236384168 C T ERO1LB Missense_Mutation p.R436Q 0.69 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 1 236645868 236645868 C T EDARADD Silent p.A189A 0.08 TCGA-CG-4460-01 1 236907965 236907965 C T ACTN2 Missense_Mutation p.A432V 0.13 tolerated(0.32) possibly_damaging(0.51) TCGA-CG-4460-01 1 237713941 237713941 G A RYR2 Missense_Mutation p.R1055H 0.25 probably_damaging(0.994) TCGA-CG-4460-01 1 237754062 237754062 C T RYR2 Silent p.C1310C 0.11 TCGA-CG-4460-01 1 240070844 240070844 G A CHRM3 Silent p.P31P 0.66 TCGA-CG-4460-01 1 240286531 240286538 AGAAGCAG - FMN2 Frame_Shift_Del p.A558Vfs*15 0.47 TCGA-CG-4460-01 1 241753558 241753558 A - KMO Frame_Shift_Del p.K420Rfs*2 0.14 TCGA-CG-4460-01 1 242162359 242162359 G A MAP1LC3C 5'UTR 0.39 TCGA-CG-4460-01 1 24390570 24390570 G A MYOM3 Missense_Mutation p.T1205M 0.27 deleterious(0.03) benign(0.149) TCGA-CG-4460-01 1 24413139 24413139 G A MYOM3 Missense_Mutation p.P598L 0.49 tolerated(0.15) benign(0.002) TCGA-CG-4460-01 1 244214688 244214689 AG - ZBTB18 5'UTR 0.10 TCGA-CG-4460-01 1 244756729 244756729 T C C1orf101 Missense_Mutation p.L741S 0.33 deleterious(0) probably_damaging(0.973) TCGA-CG-4460-01 1 2452733 2452733 G A PANK4 Missense_Mutation p.P77S 0.21 tolerated(0.74) benign(0.001) TCGA-CG-4460-01 1 245775157 245775157 C T KIF26B Silent p.A659A 0.69 TCGA-CG-4460-01 1 245848859 245848859 C T KIF26B Silent p.S858S 0.70 TCGA-CG-4460-01 1 245848905 245848905 G A KIF26B Missense_Mutation p.A874T 0.34 deleterious(0.01) unknown(0) TCGA-CG-4460-01 1 247769184 247769184 G A OR2G3 Silent p.A99A 0.11 TCGA-CG-4460-01 1 247875749 247875749 A C OR6F1 Missense_Mutation p.F103L 0.10 tolerated(0.19) benign(0.005) TCGA-CG-4460-01 1 248570229 248570229 C T OR2T1 Missense_Mutation p.P312S 0.11 deleterious(0.01) probably_damaging(1) TCGA-CG-4460-01 1 248570402 248570402 T C OR2T1 Silent p.F369F 0.14 TCGA-CG-4460-01 1 249142111 249142111 C T ZNF672 Missense_Mutation p.T213M 0.76 tolerated(0.07) probably_damaging(0.989) TCGA-CG-4460-01 1 249212032 249212032 A G PGBD2 Missense_Mutation p.S417G 0.26 tolerated(0.73) benign(0.007) TCGA-CG-4460-01 1 25825033 25825033 A - TMEM57 3'UTR 0.21 TCGA-CG-4460-01 1 26140434 26140434 G A SEPN1 Missense_Mutation p.E484K 0.26 tolerated(0.14) benign(0.007) TCGA-CG-4460-01 1 26691418 26691418 T C ZNF683 Missense_Mutation p.T207A 0.20 deleterious(0.04) possibly_damaging(0.539) TCGA-CG-4460-01 1 27107226 27107227 - T ARID1A Frame_Shift_Ins p.L2281Ffs*104 0.23 TCGA-CG-4460-01 1 27428295 27428295 G A SLC9A1 Missense_Mutation p.T653M 0.38 deleterious(0) probably_damaging(0.964) TCGA-CG-4460-01 1 27620579 27620579 G A WDTC1 Silent p.P243P 0.37 TCGA-CG-4460-01 1 27680355 27680356 CT - SYTL1 3'UTR 0.21 TCGA-CG-4460-01 1 27873887 27873887 G C AHDC1 Silent p.G1580G 0.46 TCGA-CG-4460-01 1 27943412 27943412 C T FGR Missense_Mutation p.R213Q 0.21 deleterious(0.01) possibly_damaging(0.82) TCGA-CG-4460-01 1 29069723 29069723 G A YTHDF2 Missense_Mutation p.S314N 0.45 tolerated(0.54) benign(0.093) TCGA-CG-4460-01 1 31406184 31406184 C T PUM1 Silent p.R1147R 0.25 TCGA-CG-4460-01 1 32050770 32050770 C T TINAGL1 Silent p.C292C 0.18 TCGA-CG-4460-01 1 32678164 32678164 G A DCDC2B Missense_Mutation p.G201R 0.59 deleterious(0.02) probably_damaging(0.998) TCGA-CG-4460-01 1 32713256 32713256 C T FAM167B Silent p.S78S 0.46 TCGA-CG-4460-01 1 33099621 33099621 C T ZBTB8OS Missense_Mutation p.A71T 0.24 deleterious(0.02) possibly_damaging(0.876) TCGA-CG-4460-01 1 33235544 33235544 G A KIAA1522 Missense_Mutation p.R255H 0.11 tolerated(0.6) unknown(0) TCGA-CG-4460-01 1 33291743 33291743 T C S100PBP Missense_Mutation p.S15P 0.19 deleterious(0.01) probably_damaging(0.992) TCGA-CG-4460-01 1 3348572 3348572 G A PRDM16 Silent p.P1188P 0.24 TCGA-CG-4460-01 1 35320731 35320731 C T SMIM12 3'UTR 0.18 TCGA-CG-4460-01 1 35862182 35862182 G A ZMYM4 Missense_Mutation p.V981M 0.42 tolerated(0.1) benign(0.019) TCGA-CG-4460-01 1 36563271 36563271 C T COL8A2 Missense_Mutation p.D671N 0.55 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 1 36564698 36564699 - C COL8A2 Frame_Shift_Ins p.E195Gfs*7 0.36 TCGA-CG-4460-01 1 36785689 36785689 G - SH3D21 Frame_Shift_Del p.D477Mfs*6 0.18 TCGA-CG-4460-01 1 36859374 36859375 - G LSM10 Frame_Shift_Ins p.N121Kfs*3 0.34 TCGA-CG-4460-01 1 3697620 3697620 G A LRRC47 3'UTR 0.47 TCGA-CG-4460-01 1 3703793 3703793 G A LRRC47 Missense_Mutation p.R233C 0.31 deleterious(0) possibly_damaging(0.513) TCGA-CG-4460-01 1 37291403 37291403 G - GRIK3 Frame_Shift_Del p.L519* 0.17 TCGA-CG-4460-01 1 3751488 3751488 C T CEP104 Splice_Site p.X495_splice 0.20 TCGA-CG-4460-01 1 39340127 39340127 G C GJA9 3'UTR 0.27 TCGA-CG-4460-01 1 40028016 40028016 G - PABPC4 Frame_Shift_Del p.Q581Rfs*33 0.27 TCGA-CG-4460-01 1 41978718 41978718 G T HIVEP3 Silent p.T2058T 0.27 TCGA-CG-4460-01 1 42048026 42048026 G A HIVEP3 Missense_Mutation p.P815S 0.30 benign(0.017) TCGA-CG-4460-01 1 43221293 43221293 G A LEPRE1 Nonsense_Mutation p.R366* 0.18 TCGA-CG-4460-01 1 43738918 43738918 C T TMEM125 Silent p.H175H 0.10 TCGA-CG-4460-01 1 43772887 43772887 G A TIE1 Missense_Mutation p.D239N 0.28 tolerated(0.07) probably_damaging(0.995) TCGA-CG-4460-01 1 44774067 44774067 C T ERI3 Missense_Mutation p.D225N 0.22 tolerated(0.21) benign(0.109) TCGA-CG-4460-01 1 45797863 45797863 T C MUTYH Missense_Mutation p.E300G 0.28 deleterious(0.02) benign(0.003) TCGA-CG-4460-01 1 46206988 46206988 A G IPP Silent p.G103G 0.19 TCGA-CG-4460-01 1 46496912 46496912 G A MAST2 Missense_Mutation p.R981Q 0.31 tolerated_low_confidence(0.34) benign(0.001) TCGA-CG-4460-01 1 46654982 46654982 G - POMGNT1 Frame_Shift_Del p.G641Efs*12 0.17 TCGA-CG-4460-01 1 46769468 46769468 T C UQCRH Silent p.L10L 0.48 TCGA-CG-4460-01 1 46977889 46977889 C T DMBX1 Missense_Mutation p.P286L 0.42 deleterious_low_confidence(0) benign(0.328) TCGA-CG-4460-01 1 47746401 47746401 A - STIL Frame_Shift_Del p.S577Hfs*41 0.13 TCGA-CG-4460-01 1 48701512 48701512 G A SLC5A9 Missense_Mutation p.R443H 0.16 deleterious(0.01) probably_damaging(1) TCGA-CG-4460-01 1 49208332 49208332 G A BEND5 Missense_Mutation p.A286V 0.23 tolerated(1) benign(0) TCGA-CG-4460-01 1 52238348 52238348 A G OSBPL9 Missense_Mutation p.I385V 0.18 tolerated(0.27) probably_damaging(0.989) TCGA-CG-4460-01 1 53676493 53676493 T - CPT2 Frame_Shift_Del p.F384Lfs*36 0.38 TCGA-CG-4460-01 1 53680369 53680369 C A C1orf123 Nonsense_Mutation p.G149* 0.41 TCGA-CG-4460-01 1 55161148 55161148 C T MROH7 Silent p.T983T 0.35 TCGA-CG-4460-01 1 6100692 6100692 G A AL035406.1 Missense_Mutation p.R7W 0.56 unknown(0) TCGA-CG-4460-01 1 62253580 62253580 C - INADL Frame_Shift_Del p.P337Lfs*13 0.37 TCGA-CG-4460-01 1 6257785 6257785 T - RPL22 Frame_Shift_Del p.K15Rfs*5 0.67 TCGA-CG-4460-01 1 6304653 6304653 G A HES3 Missense_Mutation p.V43M 0.33 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 1 6505882 6505882 C - ESPN Frame_Shift_Del p.P452Hfs*11 0.72 TCGA-CG-4460-01 1 65157211 65157211 C T CACHD1 Silent p.A1213A 0.33 TCGA-CG-4460-01 1 65243477 65243477 G A RAVER2 Missense_Mutation p.R163H 0.38 deleterious(0) probably_damaging(0.96) TCGA-CG-4460-01 1 65301142 65301143 - GTGAC JAK1 Frame_Shift_Ins p.R1103Sfs*5 0.26 TCGA-CG-4460-01 1 65313265 65313267 TCT - JAK1 In_Frame_Del p.K616del 0.28 TCGA-CG-4460-01 1 65330630 65330630 T - JAK1 Frame_Shift_Del p.N339Ifs*3 0.37 TCGA-CG-4460-01 1 66074549 66074549 C T LEPR Missense_Mutation p.R573C 0.51 deleterious(0.01) probably_damaging(0.965) TCGA-CG-4460-01 1 6637065 6637065 C T TAS1R1 Missense_Mutation p.T510M 0.20 tolerated(0.34) benign(0.045) TCGA-CG-4460-01 1 71530704 71530704 A G ZRANB2 3'UTR 0.33 TCGA-CG-4460-01 1 74648381 74648381 T - LRRIQ3 Frame_Shift_Del p.G139Dfs*20 0.23 TCGA-CG-4460-01 1 75038567 75038567 C T C1orf173 Missense_Mutation p.G943R 0.47 tolerated(0.21) benign(0.001) TCGA-CG-4460-01 1 7724983 7724983 G A CAMTA1 Silent p.G792G 0.04 TCGA-CG-4460-01 1 7811299 7811299 T A CAMTA1 Missense_Mutation p.I1577N 0.43 deleterious(0) probably_damaging(0.999) TCGA-CG-4460-01 1 7844974 7844974 G T PER3 Missense_Mutation p.G13W 0.36 deleterious(0) unknown(0) TCGA-CG-4460-01 1 7907911 7907911 A C UTS2 Missense_Mutation p.I112S 0.24 deleterious(0) benign(0.395) TCGA-CG-4460-01 1 8390765 8390765 C T SLC45A1 Silent p.F404F 0.42 TCGA-CG-4460-01 1 8418812 8418812 C T RERE Silent p.R1261R 0.42 TCGA-CG-4460-01 1 8418948 8418948 C T RERE Missense_Mutation p.R1216H 0.46 unknown(0) TCGA-CG-4460-01 1 85589827 85589827 A C WDR63 Missense_Mutation p.T669P 0.25 tolerated(0.07) benign(0.243) TCGA-CG-4460-01 1 87108246 87108246 A - RP4-651E10.4 Intron 0.19 TCGA-CG-4460-01 1 8927208 8927208 C T ENO1 Missense_Mutation p.A138T 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.843) TCGA-CG-4460-01 1 89298837 89298837 C T PKN2 Silent p.F916F 0.26 TCGA-CG-4460-01 1 89449493 89449493 C T RBMXL1 Missense_Mutation p.R6H 0.38 tolerated(0.31) benign(0.023) TCGA-CG-4460-01 1 9017223 9017223 G A CA6 Missense_Mutation p.R96H 0.12 tolerated(0.59) benign(0.006) TCGA-CG-4460-01 1 905733 905733 G T PLEKHN1 Missense_Mutation p.R87M 0.14 deleterious(0) probably_damaging(0.959) TCGA-CG-4460-01 1 9107748 9107748 C T SLC2A5 Silent p.A113A 0.22 TCGA-CG-4460-01 1 91728052 91728052 C A HFM1 Nonsense_Mutation p.G1358* 0.39 TCGA-CG-4460-01 1 91989636 91989636 G T CDC7 Missense_Mutation p.D457Y 0.23 deleterious(0) probably_damaging(0.961) TCGA-CG-4460-01 1 9305383 9305383 C T H6PD Silent p.H130H 0.22 TCGA-CG-4460-01 1 93599280 93599280 A - MTF2 Frame_Shift_Del p.G397Efs*6 0.47 TCGA-CG-4460-01 1 93680390 93680390 G A CCDC18 Missense_Mutation p.R582H 0.15 tolerated(0.12) benign(0.171) TCGA-CG-4460-01 1 98058844 98058844 C T DPYD Missense_Mutation p.R353H 0.43 deleterious(0) probably_damaging(0.964) TCGA-CG-4460-01 20 10025143 10025143 C T ANKEF1 Silent p.N216N 0.17 TCGA-CG-4460-01 20 13052982 13052982 C T SPTLC3 Missense_Mutation p.R128W 0.40 deleterious(0) probably_damaging(0.915) TCGA-CG-4460-01 20 16254045 16254045 C A KIF16B Missense_Mutation p.R454S 0.16 deleterious(0.02) benign(0.026) TCGA-CG-4460-01 20 17489623 17489623 G A BFSP1 Missense_Mutation p.R216W 0.43 deleterious(0) possibly_damaging(0.891) TCGA-CG-4460-01 20 23065992 23065992 C - CD93 Frame_Shift_Del p.D280Mfs*19 0.38 TCGA-CG-4460-01 20 23729754 23729754 C - CST1 Frame_Shift_Del p.V81* 0.40 TCGA-CG-4460-01 20 23966583 23966583 C T GGTLC1 Silent p.P111P 0.20 TCGA-CG-4460-01 20 2446420 2446420 G A SNRPB Silent p.L67L 0.20 TCGA-CG-4460-01 20 2774829 2774829 G A CPXM1 3'UTR 0.41 TCGA-CG-4460-01 20 29632703 29632703 A C FRG1B Missense_Mutation p.H173P 0.03 deleterious(0) probably_damaging(0.997) TCGA-CG-4460-01 20 30432975 30432975 C T FOXS1 Missense_Mutation p.R124Q 0.42 tolerated(0.08) benign(0.038) TCGA-CG-4460-01 20 30497598 30497598 G A TTLL9 Missense_Mutation p.R126H 0.08 tolerated(0.05) probably_damaging(0.993) TCGA-CG-4460-01 20 30507704 30507704 G A TTLL9 Missense_Mutation p.R181H 0.33 deleterious(0.02) probably_damaging(0.996) TCGA-CG-4460-01 20 30720866 30720866 C T TM9SF4 Silent p.S22S 0.15 TCGA-CG-4460-01 20 31022934 31022934 G A ASXL1 Missense_Mutation p.V807I 0.37 tolerated_low_confidence(0.17) benign(0.003) TCGA-CG-4460-01 20 31023718 31023718 G A ASXL1 Missense_Mutation p.R1068Q 0.36 deleterious(0.02) benign(0.007) TCGA-CG-4460-01 20 31600673 31600673 C T BPIFB2 Missense_Mutation p.R90C 0.41 deleterious(0.01) probably_damaging(0.912) TCGA-CG-4460-01 20 33855094 33855094 G A MMP24 Missense_Mutation p.E356K 0.20 tolerated(0.54) benign(0.114) TCGA-CG-4460-01 20 33875137 33875137 C T FAM83C Missense_Mutation p.R482Q 0.34 tolerated_low_confidence(0.08) benign(0.007) TCGA-CG-4460-01 20 35390884 35390884 T - DSN1 Frame_Shift_Del p.K190Nfs*22 0.34 TCGA-CG-4460-01 20 35438426 35438426 G A SOGA1 Nonsense_Mutation p.R848* 0.33 TCGA-CG-4460-01 20 36151130 36151131 - G NNAT Frame_Shift_Ins p.E74Gfs*55 0.31 TCGA-CG-4460-01 20 3649607 3649607 C T ADAM33 3'UTR 0.16 TCGA-CG-4460-01 20 36572417 36572420 AGCT - VSTM2L Frame_Shift_Del p.K126Sfs*6 0.29 TCGA-CG-4460-01 20 3672109 3672109 G A SIGLEC1 Missense_Mutation p.A1490V 0.39 tolerated(0.34) benign(0.009) TCGA-CG-4460-01 20 3678674 3678674 G - SIGLEC1 Frame_Shift_Del p.A632Pfs*32 0.31 TCGA-CG-4460-01 20 3683941 3683941 C T SIGLEC1 Silent p.L377L 0.39 TCGA-CG-4460-01 20 36848128 36848128 G A KIAA1755 Silent p.D820D 0.37 TCGA-CG-4460-01 20 37400240 37400240 C T ACTR5 Silent p.Y535Y 0.19 TCGA-CG-4460-01 20 37536484 37536484 C T PPP1R16B Silent p.L312L 0.42 TCGA-CG-4460-01 20 37580403 37580403 G A FAM83D Missense_Mutation p.R363Q 0.36 tolerated(0.07) benign(0.358) TCGA-CG-4460-01 20 39713178 39713178 C T TOP1 Missense_Mutation p.P195L 0.33 tolerated(0.26) benign(0) TCGA-CG-4460-01 20 39788291 39788291 G A PLCG1 Missense_Mutation p.R88Q 0.35 deleterious(0.01) benign(0.053) TCGA-CG-4460-01 20 39833083 39833083 G A ZHX3 Silent p.S158S 0.34 TCGA-CG-4460-01 20 42747263 42747263 C T JPH2 Silent p.R390R 0.07 TCGA-CG-4460-01 20 42788616 42788616 C T JPH2 Missense_Mutation p.E271K 0.57 tolerated(0.13) possibly_damaging(0.88) TCGA-CG-4460-01 20 42826091 42826091 C T OSER1 Silent p.E160E 0.40 TCGA-CG-4460-01 20 42907848 42907848 C - GDAP1L1 Frame_Shift_Del p.P339Hfs*50 0.34 TCGA-CG-4460-01 20 43129822 43129822 C T SERINC3 Missense_Mutation p.R392Q 0.39 tolerated(0.05) probably_damaging(0.93) TCGA-CG-4460-01 20 44512444 44512444 C T ZSWIM1 Missense_Mutation p.R405C 0.18 deleterious(0.02) benign(0.007) TCGA-CG-4460-01 20 44576407 44576409 GGA - PCIF1 3'UTR 0.25 TCGA-CG-4460-01 20 44685204 44685204 G A SLC12A5 Splice_Site p.X1060_splice 0.15 TCGA-CG-4460-01 20 44685838 44685838 C T SLC12A5 Missense_Mutation p.T1075M 0.38 deleterious(0) probably_damaging(0.987) TCGA-CG-4460-01 20 44806829 44806829 G A CDH22 Silent p.T557T 0.37 TCGA-CG-4460-01 20 45192105 45192105 G A SLC13A3 Missense_Mutation p.T527M 0.20 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 20 46331303 46331303 C T SULF2 Missense_Mutation p.R176Q 0.46 deleterious(0.03) probably_damaging(0.999) TCGA-CG-4460-01 20 47860465 47860465 A - DDX27 3'UTR 0.61 TCGA-CG-4460-01 20 47895640 47895640 G T ZNFX1 5'Flank 0.19 TCGA-CG-4460-01 20 4864313 4864313 C T SLC23A2 Missense_Mutation p.G267R 0.21 deleterious(0) probably_damaging(0.988) TCGA-CG-4460-01 20 48699267 48699268 - G UBE2V1 3'UTR 0.34 TCGA-CG-4460-01 20 49509399 49509400 - T ADNP Frame_Shift_Ins p.D618Rfs*20 0.33 TCGA-CG-4460-01 20 50273505 50273505 C T ATP9A Missense_Mutation p.R493H 0.47 tolerated(0.14) benign(0.013) TCGA-CG-4460-01 20 50400983 50400983 C - SALL4 Frame_Shift_Del p.V995Ffs*14 0.33 TCGA-CG-4460-01 20 50406728 50406728 G A SALL4 Missense_Mutation p.S765L 0.38 deleterious(0.03) benign(0.017) TCGA-CG-4460-01 20 54961464 54961464 G A AURKA Silent p.R56R 0.17 TCGA-CG-4460-01 20 56140816 56140817 GA - PCK1 Frame_Shift_Del p.E611Dfs*16 0.33 TCGA-CG-4460-01 20 56179814 56179814 C T ZBP1 Missense_Mutation p.A369T 0.32 tolerated(0.55) benign(0) TCGA-CG-4460-01 20 57430122 57430122 G A GNAS Missense_Mutation p.R601Q 0.26 tolerated_low_confidence(0.09) possibly_damaging(0.557) TCGA-CG-4460-01 20 57484421 57484421 G A GNAS Missense_Mutation p.R844H 0.34 deleterious(0.01) probably_damaging(1) TCGA-CG-4460-01 20 57767105 57767105 C T ZNF831 Missense_Mutation p.S344L 0.29 deleterious(0) probably_damaging(0.996) TCGA-CG-4460-01 20 58330401 58330401 G A PHACTR3 Missense_Mutation p.A175T 0.24 tolerated(0.53) benign(0.001) TCGA-CG-4460-01 20 58519406 58519406 A - FAM217B Frame_Shift_Del p.K137Nfs*26 0.30 TCGA-CG-4460-01 20 6022502 6022502 G A LRRN4 Silent p.P463P 0.21 TCGA-CG-4460-01 20 60856153 60856153 C T OSBPL2 Silent p.C238C 0.25 TCGA-CG-4460-01 20 60886548 60886548 C T LAMA5 Missense_Mutation p.G3284D 0.17 probably_damaging(1) TCGA-CG-4460-01 20 61143777 61143777 G A C20orf166 5'Flank 0.42 TCGA-CG-4460-01 20 61288414 61288414 C T SLCO4A1 Missense_Mutation p.A203V 0.39 tolerated(0.2) benign(0.003) TCGA-CG-4460-01 20 61461755 61461755 G A COL9A3 Missense_Mutation p.R402Q 0.50 tolerated(0.36) probably_damaging(0.997) TCGA-CG-4460-01 20 61834924 61834924 A - YTHDF1 Frame_Shift_Del p.F123Sfs*58 0.31 TCGA-CG-4460-01 20 62120472 62120472 C T EEF1A2 Missense_Mutation p.A355T 0.32 tolerated_low_confidence(0.08) benign(0.013) TCGA-CG-4460-01 20 62324311 62324311 G A RTEL1 Missense_Mutation p.G960S 0.17 tolerated(1) benign(0.004) TCGA-CG-4460-01 20 62593712 62593712 G C ZNF512B Missense_Mutation p.P727A 0.22 deleterious(0) probably_damaging(0.998) TCGA-CG-4460-01 20 62848432 62848432 C T MYT1 Silent p.F548F 0.37 TCGA-CG-4460-01 21 11038916 11038916 G T BAGE2 RNA 0.03 TCGA-CG-4460-01 21 27394295 27394295 G A APP Silent p.A242A 0.41 TCGA-CG-4460-01 21 28302347 28302347 T G ADAMTS5 Missense_Mutation p.N695H 0.21 deleterious(0.01) benign(0.006) TCGA-CG-4460-01 21 31709603 31709603 G T KRTAP27-1 Silent p.A128A 0.23 TCGA-CG-4460-01 21 31802630 31802630 C T KRTAP13-4 Missense_Mutation p.R13C 0.18 tolerated(0.31) benign(0.044) TCGA-CG-4460-01 21 32007651 32007651 C T KRTAP20-2 Silent p.G23G 0.29 TCGA-CG-4460-01 21 33073349 33073350 - T SCAF4 Frame_Shift_Ins p.A246Sfs*7 0.20 TCGA-CG-4460-01 21 33683831 33683831 G A URB1 3'UTR 0.75 TCGA-CG-4460-01 21 34443010 34443010 C T OLIG1 Missense_Mutation p.T153M 0.31 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 21 34931600 34931600 C T SON Missense_Mutation p.S2129L 0.51 benign(0.194) TCGA-CG-4460-01 21 35147078 35147078 C T ITSN1 Missense_Mutation p.R451W 0.20 deleterious(0) unknown(0) TCGA-CG-4460-01 21 35237482 35237483 - G ITSN1 Frame_Shift_Ins p.E1308Gfs*42 0.25 TCGA-CG-4460-01 21 37571375 37571375 A G DOPEY2 Missense_Mutation p.Q49R 0.46 deleterious(0) probably_damaging(0.995) TCGA-CG-4460-01 21 38538053 38538054 - A TTC3 Frame_Shift_Ins p.R1182Kfs*7 0.41 TCGA-CG-4460-01 21 40636521 40636521 G C BRWD1 Missense_Mutation p.P584A 0.41 deleterious(0) probably_damaging(0.98) TCGA-CG-4460-01 21 41385179 41385180 - G DSCAM Frame_Shift_Ins p.T1941Hfs*44 0.27 TCGA-CG-4460-01 21 41457607 41457607 C T DSCAM Missense_Mutation p.E1352K 0.21 deleterious(0.03) possibly_damaging(0.902) TCGA-CG-4460-01 21 41648130 41648130 C T DSCAM Silent p.S750S 0.23 TCGA-CG-4460-01 21 42694901 42694901 C T FAM3B Missense_Mutation p.S24L 0.45 tolerated(1) benign(0.008) TCGA-CG-4460-01 21 43338273 43338273 C G C2CD2 Missense_Mutation p.G221R 0.27 tolerated(0.26) benign(0.01) TCGA-CG-4460-01 21 43412172 43412172 G A ZBTB21 Missense_Mutation p.A678V 0.21 tolerated(0.8) benign(0.082) TCGA-CG-4460-01 21 43714712 43714712 G A ABCG1 Missense_Mutation p.V584I 0.48 tolerated(0.11) possibly_damaging(0.6) TCGA-CG-4460-01 21 43792800 43792800 G A TMPRSS3 3'UTR 0.52 TCGA-CG-4460-01 21 44329139 44329139 C T NDUFV3 3'UTR 0.21 TCGA-CG-4460-01 21 44480586 44480586 G A CBS Silent p.C370C 0.23 TCGA-CG-4460-01 21 45217944 45217944 C T RRP1 Silent p.D258D 0.19 TCGA-CG-4460-01 21 45548015 45548015 G A PWP2 Silent p.A781A 0.51 TCGA-CG-4460-01 21 45560144 45560144 C T C21orf33 Silent p.A147A 0.47 TCGA-CG-4460-01 21 45786736 45786736 G - TRPM2 Frame_Shift_Del p.A177Pfs*6 0.39 TCGA-CG-4460-01 21 45999796 45999796 G A KRTAP10-5 Silent p.S220S 0.21 TCGA-CG-4460-01 21 46330678 46330678 G - ITGB2 Frame_Shift_Del p.P7Hfs*43 0.38 TCGA-CG-4460-01 21 46686096 46686096 C T POFUT2 Intron 0.25 TCGA-CG-4460-01 21 46875743 46875743 C T COL18A1 Missense_Mutation p.P100L 0.27 unknown(0) TCGA-CG-4460-01 21 46875780 46875780 C T COL18A1 Silent p.A112A 0.25 TCGA-CG-4460-01 21 47422235 47422235 G A COL6A1 Missense_Mutation p.A724T 0.50 deleterious(0.02) probably_damaging(0.936) TCGA-CG-4460-01 21 47693430 47693430 C T MCM3AP Missense_Mutation p.E690K 0.20 deleterious(0) probably_damaging(0.998) TCGA-CG-4460-01 21 47831963 47831963 G A PCNT Silent p.P1992P 0.23 TCGA-CG-4460-01 21 47957385 47957385 C A DIP2A Silent p.V578V 0.20 TCGA-CG-4460-01 22 17072886 17072886 G T CCT8L2 Silent p.A185A 0.26 TCGA-CG-4460-01 22 20024288 20024288 G A TANGO2 5'UTR 0.53 TCGA-CG-4460-01 22 21351028 21351028 C T LZTR1 Missense_Mutation p.R755W 0.53 deleterious(0) probably_damaging(0.998) TCGA-CG-4460-01 22 21363319 21363319 G - AC002472.1 5'Flank 0.56 TCGA-CG-4460-01 22 23980961 23980961 C T GUSBP11 RNA 0.71 TCGA-CG-4460-01 22 24530314 24530314 T C CABIN1 Missense_Mutation p.W1560R 0.26 deleterious(0) probably_damaging(0.998) TCGA-CG-4460-01 22 24891361 24891361 G A UPB1 5'UTR 0.66 TCGA-CG-4460-01 22 24982177 24982177 G A FAM211B Missense_Mutation p.R209C 0.53 tolerated(0.09) benign(0.004) TCGA-CG-4460-01 22 25264776 25264776 G A SGSM1 Silent p.T415T 0.52 TCGA-CG-4460-01 22 25297852 25297852 T C SGSM1 Missense_Mutation p.V943A 0.64 deleterious(0) possibly_damaging(0.71) TCGA-CG-4460-01 22 30639980 30639980 G A LIF Missense_Mutation p.P90L 0.53 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 22 31534698 31534698 C T PLA2G3 Missense_Mutation p.R201Q 0.55 deleterious(0.04) possibly_damaging(0.627) TCGA-CG-4460-01 22 32015676 32015676 G A PISD Silent p.F350F 0.60 TCGA-CG-4460-01 22 33712182 33712182 C T LARGE Missense_Mutation p.R447Q 0.29 tolerated(0.07) probably_damaging(0.996) TCGA-CG-4460-01 22 38421669 38421669 G A POLR2F Missense_Mutation p.R126H 0.59 benign(0.002) TCGA-CG-4460-01 22 39146907 39146907 G A SUN2 Silent p.Y140Y 0.78 TCGA-CG-4460-01 22 39388141 39388141 G A APOBEC3B Missense_Mutation p.R374Q 0.53 tolerated(0.97) benign(0) TCGA-CG-4460-01 22 39918438 39918438 G A ATF4 Missense_Mutation p.R296H 0.48 deleterious(0) benign(0.269) TCGA-CG-4460-01 22 41257751 41257753 TCA - DNAJB7 In_Frame_Del p.D82del 0.67 TCGA-CG-4460-01 22 41551082 41551082 C T EP300 Missense_Mutation p.R1076C 0.63 probably_damaging(1) TCGA-CG-4460-01 22 41721836 41721836 G A ZC3H7B Missense_Mutation p.D67N 0.33 tolerated(0.09) benign(0.262) TCGA-CG-4460-01 22 45132994 45132994 C T PRR5 Missense_Mutation p.P368L 0.56 tolerated_low_confidence(0.07) probably_damaging(0.998) TCGA-CG-4460-01 22 46835250 46835250 G A CELSR1 Silent p.N1414N 0.67 TCGA-CG-4460-01 22 46860057 46860057 C T CELSR1 Missense_Mutation p.V1244I 0.63 tolerated(1) benign(0.031) TCGA-CG-4460-01 22 50656200 50656200 G A TUBGCP6 Missense_Mutation p.R1809C 0.39 deleterious(0) probably_damaging(0.961) TCGA-CG-4460-01 22 50717119 50717119 C T PLXNB2 Missense_Mutation p.R1518H 0.50 deleterious(0) probably_damaging(0.999) TCGA-CG-4460-01 22 50720108 50720108 A G PLXNB2 Missense_Mutation p.C1137R 0.17 deleterious(0) probably_damaging(0.999) TCGA-CG-4460-01 22 50877078 50877078 G A PPP6R2 Missense_Mutation p.R646H 0.54 tolerated(0.27) benign(0.005) TCGA-CG-4460-01 22 51014750 51014750 C T CPT1B Silent p.V192V 0.29 TCGA-CG-4460-01 2 100167951 100167951 G A AFF3 Silent p.S1247S 0.28 TCGA-CG-4460-01 2 101648754 101648754 C T TBC1D8 Missense_Mutation p.D623N 0.42 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 2 101881315 101881315 C T CNOT11 Nonsense_Mutation p.R281* 0.34 TCGA-CG-4460-01 2 103149075 103149075 G A SLC9A4 Silent p.S775S 0.19 TCGA-CG-4460-01 2 103378794 103378794 T C TMEM182 Missense_Mutation p.S40P 0.39 tolerated(0.47) benign(0.291) TCGA-CG-4460-01 2 10582277 10582277 C T ODC1 Silent p.A258A 0.21 TCGA-CG-4460-01 2 105859168 105859168 G A GPR45 Missense_Mutation p.V285I 0.36 tolerated(0.46) benign(0.009) TCGA-CG-4460-01 2 106498310 106498310 C T NCK2 Silent p.Y251Y 0.20 TCGA-CG-4460-01 2 109547467 109547467 C T EDAR Missense_Mutation p.A2T 0.40 tolerated_low_confidence(0.06) possibly_damaging(0.883) TCGA-CG-4460-01 2 112896174 112896174 A G FBLN7 5'UTR 0.18 TCGA-CG-4460-01 2 112994207 112994207 G A ZC3H8 Nonsense_Mutation p.R146* 0.20 TCGA-CG-4460-01 2 113067706 113067707 - A ZC3H6 Frame_Shift_Ins p.Q197Tfs*11 0.33 TCGA-CG-4460-01 2 113146635 113146635 T G RGPD8 Missense_Mutation p.K1296T 0.39 deleterious(0.02) probably_damaging(0.954) TCGA-CG-4460-01 2 113890256 113890256 C T IL1RN Silent p.S117S 0.36 TCGA-CG-4460-01 2 120643418 120643418 G A PTPN4 Missense_Mutation p.R212H 0.35 deleterious(0) probably_damaging(0.976) TCGA-CG-4460-01 2 120889210 120889211 AG - EPB41L5 Frame_Shift_Del p.K508Afs*5 0.31 TCGA-CG-4460-01 2 121732661 121732661 C T GLI2 Silent p.Y448Y 0.33 TCGA-CG-4460-01 2 121747789 121747789 G A GLI2 Silent p.P1433P 0.31 TCGA-CG-4460-01 2 125555832 125555832 C A CNTNAP5 Missense_Mutation p.P1050H 0.13 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 2 128186358 128186358 G T PROC Missense_Mutation p.A408S 0.51 tolerated(0.06) possibly_damaging(0.633) TCGA-CG-4460-01 2 128480901 128480901 C T WDR33 Missense_Mutation p.R406Q 0.43 deleterious(0.01) unknown(0) TCGA-CG-4460-01 2 128622774 128622774 C T AMMECR1L Missense_Mutation p.R276Q 0.40 tolerated(1) benign(0.131) TCGA-CG-4460-01 2 130898849 130898849 C T CCDC74B Missense_Mutation p.G189S 0.23 tolerated(1) benign(0.02) TCGA-CG-4460-01 2 130948162 130948162 G A MZT2B Missense_Mutation p.G147D 0.27 deleterious(0) possibly_damaging(0.621) TCGA-CG-4460-01 2 131487749 131487749 C T GPR148 Missense_Mutation p.A342V 0.10 tolerated(0.1) benign(0) TCGA-CG-4460-01 2 131521709 131521709 C T AMER3 Silent p.N688N 0.25 TCGA-CG-4460-01 2 131976089 131976089 C T POTEE Silent p.S38S 0.33 TCGA-CG-4460-01 2 131976377 131976377 C T POTEE Silent p.H134H 0.29 TCGA-CG-4460-01 2 135011936 135011936 G A MGAT5 5'UTR 0.23 TCGA-CG-4460-01 2 135893332 135893332 T - RAB3GAP1 Frame_Shift_Del p.F586Lfs*4 0.13 TCGA-CG-4460-01 2 138378257 138378257 A G THSD7B Missense_Mutation p.T1257A 0.31 deleterious(0) unknown(0) TCGA-CG-4460-01 2 149227408 149227408 C T MBD5 Silent p.L632L 0.37 TCGA-CG-4460-01 2 149543879 149543879 A G EPC2 Missense_Mutation p.N786S 0.19 tolerated(0.12) benign(0.048) TCGA-CG-4460-01 2 150061784 150061784 G A LYPD6B Missense_Mutation p.R32H 0.42 benign(0.36) TCGA-CG-4460-01 2 152108096 152108096 T C RBM43 Missense_Mutation p.K133R 0.43 deleterious(0.04) benign(0.258) TCGA-CG-4460-01 2 152406166 152406166 C T NEB Missense_Mutation p.R6678H 0.39 possibly_damaging(0.788) TCGA-CG-4460-01 2 152670756 152670756 C T ARL5A Missense_Mutation p.R61H 0.09 tolerated(1) benign(0) TCGA-CG-4460-01 2 153527837 153527837 G A PRPF40A Missense_Mutation p.R477C 0.32 deleterious(0) possibly_damaging(0.898) TCGA-CG-4460-01 2 153529040 153529040 C A PRPF40A Nonsense_Mutation p.E435* 0.25 TCGA-CG-4460-01 2 155711597 155711597 A G KCNJ3 Silent p.K426K 0.34 TCGA-CG-4460-01 2 158114723 158114723 G T GALNT5 Silent p.R43R 0.18 TCGA-CG-4460-01 2 158485127 158485127 G A ACVR1C Silent p.R10R 0.27 TCGA-CG-4460-01 2 159481645 159481645 C T PKP4 Missense_Mutation p.R287W 0.42 deleterious(0.01) probably_damaging(0.968) TCGA-CG-4460-01 2 160229665 160229665 C T BAZ2B Silent p.A1368A 0.16 TCGA-CG-4460-01 2 160599719 160599719 A G MARCH7 Missense_Mutation p.T101A 0.43 tolerated(0.05) benign(0.012) TCGA-CG-4460-01 2 164467078 164467078 A G FIGN Missense_Mutation p.Y422H 0.24 tolerated(0.07) possibly_damaging(0.656) TCGA-CG-4460-01 2 164467489 164467489 G - FIGN Frame_Shift_Del p.L285Yfs*16 0.40 TCGA-CG-4460-01 2 165579007 165579007 T C COBLL1 Silent p.L229L 0.29 TCGA-CG-4460-01 2 165946973 165946973 C T SCN3A Missense_Mutation p.R1897H 0.36 tolerated(0.07) probably_damaging(0.999) TCGA-CG-4460-01 2 166535340 166535340 A - CSRNP3 Frame_Shift_Del p.N280Tfs*9 0.40 TCGA-CG-4460-01 2 167128940 167128940 C T SCN9A Missense_Mutation p.S1096N 0.27 tolerated(0.06) probably_damaging(0.983) TCGA-CG-4460-01 2 169571639 169571639 G T CERS6 Missense_Mutation p.E246D 0.23 deleterious(0) probably_damaging(0.996) TCGA-CG-4460-01 2 169826024 169826024 C T ABCB11 Missense_Mutation p.R616H 0.55 deleterious(0) probably_damaging(0.999) TCGA-CG-4460-01 2 170062856 170062856 T C LRP2 Silent p.P2458P 0.47 TCGA-CG-4460-01 2 172584891 172584891 T A DYNC1I2 Missense_Mutation p.I407N 0.17 deleterious(0) possibly_damaging(0.519) TCGA-CG-4460-01 2 175742756 175742756 A C CHN1 Missense_Mutation p.L121V 0.27 deleterious(0) probably_damaging(0.952) TCGA-CG-4460-01 2 176043783 176043783 A G ATP5G3 Splice_Site p.X105_splice 0.18 TCGA-CG-4460-01 2 179368490 179368490 C A PLEKHA3 Missense_Mutation p.P260H 0.20 tolerated_low_confidence(0.24) benign(0.319) TCGA-CG-4460-01 2 179408004 179408004 G C TTN Missense_Mutation p.S32232R 0.18 TCGA-CG-4460-01 2 179436698 179436698 G A TTN Silent p.L24721L 0.45 TCGA-CG-4460-01 2 179458949 179458949 C T TTN Missense_Mutation p.D19391N 0.21 TCGA-CG-4460-01 2 179472320 179472320 G A TTN Missense_Mutation p.R17699C 0.26 TCGA-CG-4460-01 2 179480114 179480114 G A TTN Silent p.R16186R 0.05 TCGA-CG-4460-01 2 179480434 179480434 G A TTN Missense_Mutation p.R16132C 0.47 TCGA-CG-4460-01 2 179500910 179500910 C T TTN Silent p.Q13796Q 0.46 TCGA-CG-4460-01 2 179641444 179641444 C T TTN Missense_Mutation p.R1716H 0.40 TCGA-CG-4460-01 2 180851432 180851432 T G CWC22 Missense_Mutation p.M66L 0.60 tolerated(0.65) benign(0.003) TCGA-CG-4460-01 2 18112795 18112795 A T KCNS3 Nonsense_Mutation p.R174* 0.53 TCGA-CG-4460-01 2 18112796 18112796 G T KCNS3 Missense_Mutation p.R174I 0.51 tolerated(0.35) benign(0.091) TCGA-CG-4460-01 2 18112898 18112898 C T KCNS3 Missense_Mutation p.S208L 0.24 deleterious(0.01) benign(0.001) TCGA-CG-4460-01 2 18113028 18113029 - A KCNS3 Frame_Shift_Ins p.N253Kfs*7 0.43 TCGA-CG-4460-01 2 183853877 183853877 G A NCKAP1 Silent p.D282D 0.19 TCGA-CG-4460-01 2 185801911 185801912 - A ZNF804A Frame_Shift_Ins p.R599Kfs*27 0.09 TCGA-CG-4460-01 2 186673680 186673680 A G FSIP2 Silent p.Q6638Q 0.13 TCGA-CG-4460-01 2 189875587 189875587 A G COL3A1 Missense_Mutation p.T1409A 0.34 unknown(0) TCGA-CG-4460-01 2 189876400 189876400 G A COL3A1 Missense_Mutation p.R1434H 0.35 unknown(0) TCGA-CG-4460-01 2 190742022 190742022 C G PMS1 Missense_Mutation p.Q887E 0.17 deleterious(0) probably_damaging(0.998) TCGA-CG-4460-01 2 196545516 196545516 T - SLC39A10 Frame_Shift_Del p.P253Lfs*69 0.34 TCGA-CG-4460-01 2 196602680 196602680 G C DNAH7 Missense_Mutation p.R4014G 0.32 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 2 196801373 196801374 - A DNAH7 Frame_Shift_Ins p.L1074Ffs*4 0.29 TCGA-CG-4460-01 2 196834720 196834720 T A DNAH7 Silent p.L719L 0.19 TCGA-CG-4460-01 2 196922786 196922786 G A DNAH7 Silent p.L24L 0.24 TCGA-CG-4460-01 2 197629250 197629250 C T GTF3C3 3'UTR 0.32 TCGA-CG-4460-01 2 198260814 198260814 C T SF3B1 Missense_Mutation p.V1169I 0.30 tolerated(0.32) benign(0.211) TCGA-CG-4460-01 2 198571363 198571363 G A MARS2 Missense_Mutation p.A412T 0.17 deleterious(0) benign(0.263) TCGA-CG-4460-01 2 200137067 200137067 T A SATB2 Missense_Mutation p.K690M 0.31 deleterious(0) possibly_damaging(0.702) TCGA-CG-4460-01 2 200804837 200804837 C T TYW5 Missense_Mutation p.R108Q 0.26 deleterious(0) probably_damaging(0.998) TCGA-CG-4460-01 2 20145702 20145702 G A WDR35 Nonsense_Mutation p.R575* 0.44 TCGA-CG-4460-01 2 201505841 201505841 C T AOX1 Silent p.G863G 0.18 TCGA-CG-4460-01 2 202549797 202549797 C T MPP4 Silent p.A188A 0.29 TCGA-CG-4460-01 2 202574690 202574690 G A ALS2 Silent p.Y1398Y 0.35 TCGA-CG-4460-01 2 203622081 203622081 C T FAM117B Missense_Mutation p.S417L 0.34 tolerated(0.07) benign(0.399) TCGA-CG-4460-01 2 203684334 203684334 A - ICA1L Intron 0.35 TCGA-CG-4460-01 2 203776227 203776227 G T WDR12 5'UTR 0.09 TCGA-CG-4460-01 2 207174428 207174428 A - ZDBF2 Frame_Shift_Del p.K1728Nfs*5 0.27 TCGA-CG-4460-01 2 208440098 208440098 C T CREB1 Missense_Mutation p.P217L 0.25 deleterious(0) benign(0.002) TCGA-CG-4460-01 2 20974571 20974571 G A C2orf43 Missense_Mutation p.P156L 0.33 deleterious(0.04) benign(0.035) TCGA-CG-4460-01 2 210595034 210595034 G A MAP2 Silent p.S1799S 0.48 TCGA-CG-4460-01 2 214354767 214354767 C T SPAG16 Silent p.D341D 0.08 TCGA-CG-4460-01 2 214878683 214878683 G A SPAG16 Missense_Mutation p.C470Y 0.18 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 2 215646085 215646085 T - BARD1 Frame_Shift_Del p.D172Mfs*40 0.18 TCGA-CG-4460-01 2 215884317 215884317 T - ABCA12 Frame_Shift_Del p.V498* 0.21 TCGA-CG-4460-01 2 216272844 216272844 C T FN1 Silent p.Q835Q 0.40 TCGA-CG-4460-01 2 216293030 216293030 G T FN1 Silent p.S239S 0.35 TCGA-CG-4460-01 2 216300396 216300396 C T FN1 Missense_Mutation p.A44T 0.10 tolerated(0.24) benign(0.003) TCGA-CG-4460-01 2 218749845 218749845 C T TNS1 Missense_Mutation p.V262I 0.36 deleterious(0) probably_damaging(0.998) TCGA-CG-4460-01 2 218925148 218925148 C T CXCR2P1 RNA 0.44 TCGA-CG-4460-01 2 219525928 219525928 G A BCS1L Missense_Mutation p.R73H 0.36 tolerated(0.16) benign(0.003) TCGA-CG-4460-01 2 220343908 220343908 C T SPEG Silent p.T1690T 0.43 TCGA-CG-4460-01 2 220499298 220499298 G A SLC4A3 Missense_Mutation p.R600H 0.45 deleterious(0) probably_damaging(0.999) TCGA-CG-4460-01 2 223158408 223158408 C A PAX3 Intron 0.22 TCGA-CG-4460-01 2 224463151 224463151 G A SCG2 Missense_Mutation p.R284C 0.45 deleterious(0) probably_damaging(0.999) TCGA-CG-4460-01 2 227661341 227661341 C - IRS1 Frame_Shift_Del p.G705Afs*29 0.41 TCGA-CG-4460-01 2 228137810 228137810 C - COL4A3 Frame_Shift_Del p.G637Dfs*110 0.36 TCGA-CG-4460-01 2 230633979 230633979 G A TRIP12 Silent p.C1882C 0.23 TCGA-CG-4460-01 2 230672494 230672494 G A TRIP12 Missense_Mutation p.A761V 0.17 tolerated(0.57) benign(0.079) TCGA-CG-4460-01 2 231134660 231134660 G A SP140 Missense_Mutation p.G479D 0.37 tolerated(1) benign(0.002) TCGA-CG-4460-01 2 231222653 231222653 C T SP140L Missense_Mutation p.R81W 0.42 deleterious(0.01) probably_damaging(0.916) TCGA-CG-4460-01 2 232011002 232011002 G A PSMD1 Missense_Mutation p.V683M 0.21 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 2 232458076 232458076 G A C2orf57 Silent p.A138A 0.47 TCGA-CG-4460-01 2 233274497 233274497 C T ALPPL2 Missense_Mutation p.A505V 0.15 tolerated(0.11) benign(0.007) TCGA-CG-4460-01 2 235950856 235950856 T C SH3BP4 Silent p.P481P 0.24 TCGA-CG-4460-01 2 237028934 237028934 G A AGAP1 Missense_Mutation p.R738Q 0.22 tolerated(0.23) benign(0.004) TCGA-CG-4460-01 2 239079047 239079047 A - ILKAP 3'UTR 0.44 TCGA-CG-4460-01 2 239342333 239342333 G A ASB1 Missense_Mutation p.R63Q 0.40 tolerated(0.31) benign(0.006) TCGA-CG-4460-01 2 240969167 240969167 C A OR6B2 Missense_Mutation p.R227L 0.21 deleterious(0.05) benign(0.065) TCGA-CG-4460-01 2 240982128 240982128 G T PRR21 Missense_Mutation p.P91H 0.37 tolerated_low_confidence(0.54) unknown(0) TCGA-CG-4460-01 2 241463321 241463321 T C ANKMY1 Missense_Mutation p.M516V 0.23 tolerated(0.06) benign(0.033) TCGA-CG-4460-01 2 242065999 242065999 G A PASK Silent p.S777S 0.32 TCGA-CG-4460-01 2 242102698 242102698 A G PPP1R7 Splice_Site p.X200_splice 0.19 TCGA-CG-4460-01 2 242169367 242169367 C T HDLBP Missense_Mutation p.V1201M 0.18 deleterious(0.01) benign(0.186) TCGA-CG-4460-01 2 242173273 242173273 C T HDLBP Missense_Mutation p.V1084M 0.13 deleterious(0) probably_damaging(0.999) TCGA-CG-4460-01 2 242572368 242572368 C T THAP4 Missense_Mutation p.V402I 0.43 tolerated(0.1) benign(0.002) TCGA-CG-4460-01 2 24431159 24431159 G A ITSN2 Missense_Mutation p.A1542V 0.38 deleterious(0) unknown(0) TCGA-CG-4460-01 2 25464524 25464524 C T DNMT3A Silent p.S663S 0.54 TCGA-CG-4460-01 2 26177191 26177191 C T KIF3C Missense_Mutation p.V612M 0.47 benign(0.04) TCGA-CG-4460-01 2 26707419 26707419 G A OTOF Silent p.D376D 0.15 TCGA-CG-4460-01 2 27354640 27354640 A G PREB Silent p.P353P 0.19 TCGA-CG-4460-01 2 27478206 27478206 G A SLC30A3 Missense_Mutation p.R381C 0.49 tolerated(0.14) possibly_damaging(0.676) TCGA-CG-4460-01 2 27799940 27799940 G T C2orf16 Missense_Mutation p.L167F 0.20 deleterious(0.01) probably_damaging(0.996) TCGA-CG-4460-01 2 32958960 32958960 C A TTC27 Nonsense_Mutation p.C433* 0.22 TCGA-CG-4460-01 2 32961762 32961762 G A TTC27 Missense_Mutation p.R444H 0.24 deleterious(0.05) benign(0.021) TCGA-CG-4460-01 2 33360021 33360021 C T LTBP1 Nonsense_Mutation p.R399* 0.45 TCGA-CG-4460-01 2 33572510 33572510 C T LTBP1 Silent p.C1311C 0.14 TCGA-CG-4460-01 2 33952620 33952620 C T AC009499.1 Intron 0.23 TCGA-CG-4460-01 2 37076597 37076597 C T STRN 3'UTR 0.36 TCGA-CG-4460-01 2 38294151 38294151 C T RMDN2 3'UTR 0.23 TCGA-CG-4460-01 2 39251185 39251185 T - SOS1 Frame_Shift_Del p.I390Yfs*11 0.13 TCGA-CG-4460-01 2 42990174 42990174 G A OXER1 Silent p.D382D 0.46 TCGA-CG-4460-01 2 44055164 44055164 G A ABCG5 Missense_Mutation p.R198W 0.52 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 2 44079964 44079964 C T ABCG8 Silent p.I307I 0.43 TCGA-CG-4460-01 2 44436507 44436507 C T PPM1B Intron 0.38 TCGA-CG-4460-01 2 44999274 44999274 G A CAMKMT 3'UTR 0.14 TCGA-CG-4460-01 2 48685352 48685352 C T PPP1R21 Missense_Mutation p.R121W 0.47 deleterious(0) probably_damaging(0.999) TCGA-CG-4460-01 2 49217735 49217735 T C FSHR Missense_Mutation p.H139R 0.14 tolerated(0.11) benign(0) TCGA-CG-4460-01 2 61447484 61447484 G A USP34 Missense_Mutation p.R2670W 0.23 tolerated(0.06) probably_damaging(0.937) TCGA-CG-4460-01 2 61463296 61463296 C A USP34 Missense_Mutation p.K2306N 0.31 deleterious(0) benign(0.28) TCGA-CG-4460-01 2 61577479 61577479 C T USP34 Missense_Mutation p.A475T 0.28 deleterious(0.02) probably_damaging(0.981) TCGA-CG-4460-01 2 69590695 69590695 G A GFPT1 Missense_Mutation p.R111C 0.12 deleterious(0.02) benign(0.444) TCGA-CG-4460-01 2 71742778 71742778 G A DYSF Missense_Mutation p.R262H 0.39 deleterious(0) benign(0.3) TCGA-CG-4460-01 2 73456018 73456018 G A PRADC1 Silent p.N117N 0.38 TCGA-CG-4460-01 2 73717195 73717195 G A ALMS1 Silent p.P2702P 0.38 TCGA-CG-4460-01 2 73829423 73829423 C T ALMS1 Missense_Mutation p.R4075W 0.41 probably_damaging(1) TCGA-CG-4460-01 2 74074539 74074539 G A STAMBP Missense_Mutation p.R134Q 0.33 tolerated(0.22) benign(0.006) TCGA-CG-4460-01 2 74701736 74701736 T C CCDC142 Silent p.Q723Q 0.22 TCGA-CG-4460-01 2 75094895 75094895 G A HK2 Missense_Mutation p.R120Q 0.30 tolerated(0.63) benign(0.017) TCGA-CG-4460-01 2 75187275 75187275 T C POLE4 Splice_Site p.X114_splice 0.16 TCGA-CG-4460-01 2 77746577 77746577 G T LRRTM4 Missense_Mutation p.L140I 0.12 deleterious(0.04) probably_damaging(0.999) TCGA-CG-4460-01 2 85510676 85510676 C T TCF7L1 Missense_Mutation p.T167M 0.35 deleterious(0.01) possibly_damaging(0.88) TCGA-CG-4460-01 2 85604560 85604560 C T ELMOD3 Missense_Mutation p.A234V 0.48 tolerated(0.06) possibly_damaging(0.754) TCGA-CG-4460-01 2 85852703 85852703 C T USP39 Silent p.N204N 0.34 TCGA-CG-4460-01 2 86705018 86705018 G A KDM3A Missense_Mutation p.R653Q 0.38 deleterious(0) probably_damaging(0.996) TCGA-CG-4460-01 2 8871749 8871749 G - KIDINS220 Frame_Shift_Del p.L1473Wfs*35 0.21 TCGA-CG-4460-01 2 88828701 88828701 C T TEX37 Silent p.P84P 0.35 TCGA-CG-4460-01 2 88828929 88828929 T A TEX37 Missense_Mutation p.H160Q 0.18 tolerated_low_confidence(0.13) benign(0.071) TCGA-CG-4460-01 2 89111034 89111034 G T MIR4436A 5'Flank 0.50 TCGA-CG-4460-01 2 89417124 89417124 G T IGKV1-17 Silent p.A20A 0.31 TCGA-CG-4460-01 2 95847120 95847120 T - ZNF2 Frame_Shift_Del p.F184Lfs*38 0.32 TCGA-CG-4460-01 2 96072707 96072707 G A FAHD2A Silent p.L88L 0.14 TCGA-CG-4460-01 2 96078466 96078466 C - FAHD2A Frame_Shift_Del p.P281Qfs*26 0.26 TCGA-CG-4460-01 2 96781764 96781764 G A ADRA2B Missense_Mutation p.S42L 0.33 deleterious(0) benign(0.197) TCGA-CG-4460-01 2 96859066 96859067 - T STARD7 Frame_Shift_Ins p.W192Mfs*12 0.23 TCGA-CG-4460-01 2 96952162 96952162 G - SNRNP200 Frame_Shift_Del p.P1297Lfs*16 0.36 TCGA-CG-4460-01 2 97493617 97493617 T C CNNM3 Missense_Mutation p.Y557H 0.15 deleterious(0.04) benign(0.302) TCGA-CG-4460-01 2 97749482 97749482 G A FAHD2B 3'UTR 0.10 TCGA-CG-4460-01 2 97866079 97866079 C T ANKRD36 Missense_Mutation p.R922W 0.24 deleterious_low_confidence(0) possibly_damaging(0.689) TCGA-CG-4460-01 2 98274730 98274730 G A ACTR1B Missense_Mutation p.T236M 0.39 tolerated(0.06) benign(0.067) TCGA-CG-4460-01 2 98409165 98409165 C T TMEM131 Silent p.A1276A 0.44 TCGA-CG-4460-01 2 99013320 99013320 C T CNGA3 Missense_Mutation p.R563C 0.30 deleterious(0) probably_damaging(0.999) TCGA-CG-4460-01 2 99241956 99241956 A - MGAT4A 3'UTR 0.32 TCGA-CG-4460-01 2 99907721 99907721 G A LYG1 Silent p.G104G 0.24 TCGA-CG-4460-01 3 10413525 10413525 C T ATP2B2 Missense_Mutation p.A543T 0.21 tolerated(0.06) benign(0.36) TCGA-CG-4460-01 3 107524428 107524428 C T BBX 3'UTR 0.38 TCGA-CG-4460-01 3 10979960 10979960 A G SLC6A11 Missense_Mutation p.S591G 0.46 tolerated(0.27) benign(0.004) TCGA-CG-4460-01 3 111604216 111604216 G A PHLDB2 Missense_Mutation p.R431Q 0.25 deleterious(0) probably_damaging(0.956) TCGA-CG-4460-01 3 112998786 112998786 C T BOC Silent p.P712P 0.25 TCGA-CG-4460-01 3 113513952 113513952 C T ATP6V1A Missense_Mutation p.A376V 0.18 deleterious(0.01) probably_damaging(0.986) TCGA-CG-4460-01 3 115395094 115395094 G A GAP43 Missense_Mutation p.E125K 0.15 tolerated(0.1) possibly_damaging(0.593) TCGA-CG-4460-01 3 11712867 11712867 C T VGLL4 Intron 0.35 TCGA-CG-4460-01 3 119153616 119153616 C T TMEM39A Missense_Mutation p.R409H 0.21 deleterious(0.02) benign(0.028) TCGA-CG-4460-01 3 119204224 119204224 C T POGLUT1 Nonsense_Mutation p.R210* 0.41 TCGA-CG-4460-01 3 119263442 119263442 C T CD80 Missense_Mutation p.A125T 0.49 tolerated(0.47) benign(0.011) TCGA-CG-4460-01 3 121256027 121256027 C T POLQ Missense_Mutation p.M220I 0.12 deleterious(0) probably_damaging(0.99) TCGA-CG-4460-01 3 121341633 121341633 G - FBXO40 Frame_Shift_Del p.G454Dfs*11 0.39 TCGA-CG-4460-01 3 121573569 121573569 A - EAF2 Frame_Shift_Del p.K81Nfs*4 0.18 TCGA-CG-4460-01 3 122873884 122873884 G A PDIA5 Missense_Mutation p.R447Q 0.22 tolerated(0.27) benign(0.382) TCGA-CG-4460-01 3 122880846 122880846 T C PDIA5 3'UTR 0.21 TCGA-CG-4460-01 3 123022985 123022985 A G ADCY5 Missense_Mutation p.S830P 0.24 deleterious(0) possibly_damaging(0.883) TCGA-CG-4460-01 3 123359271 123359271 C T MYLK Missense_Mutation p.R1567Q 0.21 tolerated(0.23) benign(0.301) TCGA-CG-4460-01 3 125032418 125032418 A G ZNF148 Missense_Mutation p.S23P 0.22 tolerated(0.26) benign(0.329) TCGA-CG-4460-01 3 126071431 126071431 G A KLF15 Missense_Mutation p.A112V 0.21 tolerated(0.18) benign(0.036) TCGA-CG-4460-01 3 126708091 126708091 G A PLXNA1 Missense_Mutation p.V219M 0.42 deleterious(0.04) probably_damaging(0.998) TCGA-CG-4460-01 3 126748890 126748890 C T PLXNA1 Missense_Mutation p.R1682W 0.26 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 3 127325627 127325627 G A MCM2 Silent p.Q356Q 0.25 TCGA-CG-4460-01 3 127778967 127778967 C T SEC61A1 Silent p.I125I 0.46 TCGA-CG-4460-01 3 128696906 128696907 - T KIAA1257 Frame_Shift_Ins p.H264Tfs*21 0.40 TCGA-CG-4460-01 3 12881820 12881821 AG - RPL32 Intron 0.30 TCGA-CG-4460-01 3 130735111 130735111 C T ASTE1 Missense_Mutation p.R529Q 0.19 tolerated(0.37) benign(0.002) TCGA-CG-4460-01 3 131102022 131102022 G A NUDT16 3'UTR 0.50 TCGA-CG-4460-01 3 133647492 133647492 C T C3orf36 Silent p.T52T 0.35 TCGA-CG-4460-01 3 1339643 1339643 A C CNTN6 Silent p.S243S 0.15 TCGA-CG-4460-01 3 137843624 137843624 C T A4GNT Missense_Mutation p.D169N 0.29 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 3 138024846 138024846 C A NME9 Missense_Mutation p.E151D 0.20 deleterious(0.01) possibly_damaging(0.894) TCGA-CG-4460-01 3 138244336 138244336 C T CEP70 Missense_Mutation p.V314I 0.21 tolerated(1) benign(0.004) TCGA-CG-4460-01 3 140277617 140277617 C G CLSTN2 Silent p.A653A 0.54 TCGA-CG-4460-01 3 140997262 140997262 C T ACPL2 Missense_Mutation p.T53M 0.28 deleterious(0) benign(0.223) TCGA-CG-4460-01 3 141164024 141164024 A - ZBTB38 Frame_Shift_Del p.M934* 0.24 TCGA-CG-4460-01 3 141497514 141497514 G A GRK7 Missense_Mutation p.V130M 0.21 tolerated(0.22) benign(0.205) TCGA-CG-4460-01 3 141499493 141499493 C T GRK7 Missense_Mutation p.S297L 0.34 deleterious(0) benign(0.311) TCGA-CG-4460-01 3 141499584 141499584 C T GRK7 Silent p.L327L 0.33 TCGA-CG-4460-01 3 14183166 14183166 G A TMEM43 Silent p.S358S 0.50 TCGA-CG-4460-01 3 142681261 142681261 A T PAQR9 Silent p.I306I 0.20 TCGA-CG-4460-01 3 142741404 142741404 G A U2SURP Missense_Mutation p.M306I 0.40 deleterious(0) probably_damaging(0.954) TCGA-CG-4460-01 3 14552950 14552950 G A GRIP2 RNA 0.20 TCGA-CG-4460-01 3 150644756 150644756 A G CLRN1 3'Flank 0.31 TCGA-CG-4460-01 3 154017706 154017706 C T DHX36 Silent p.A490A 0.18 TCGA-CG-4460-01 3 157004347 157004347 A T VEPH1 Silent p.T709T 0.44 TCGA-CG-4460-01 3 157004348 157004348 G T VEPH1 Missense_Mutation p.T709N 0.44 deleterious(0.02) benign(0.367) TCGA-CG-4460-01 3 157213196 157213196 T C VEPH1 5'UTR 0.48 TCGA-CG-4460-01 3 158363466 158363467 - A GFM1 Frame_Shift_Ins p.I46Nfs*11 0.37 TCGA-CG-4460-01 3 16646814 16646814 C T DAZL 5'Flank 0.32 TCGA-CG-4460-01 3 167023670 167023670 T - ZBBX Frame_Shift_Del p.I496Lfs*11 0.37 TCGA-CG-4460-01 3 167542311 167542311 G A SERPINI1 Missense_Mutation p.D373N 0.22 tolerated(1) probably_damaging(1) TCGA-CG-4460-01 3 167728581 167728581 T - GOLIM4 Frame_Shift_Del p.R631Gfs*87 0.24 TCGA-CG-4460-01 3 168833509 168833509 C T MECOM Silent p.S594S 0.21 TCGA-CG-4460-01 3 170102361 170102361 G A SKIL Missense_Mutation p.V413M 0.26 deleterious(0) possibly_damaging(0.891) TCGA-CG-4460-01 3 170784473 170784473 C A TNIK Nonsense_Mutation p.G1251* 0.20 TCGA-CG-4460-01 3 172520688 172520688 G A ECT2 Missense_Mutation p.R675Q 0.24 deleterious(0.05) possibly_damaging(0.781) TCGA-CG-4460-01 3 172631534 172631534 G A SPATA16 Silent p.L502L 0.26 TCGA-CG-4460-01 3 178785523 178785523 G A ZMAT3 Silent p.H6H 0.43 TCGA-CG-4460-01 3 179525581 179525581 C T PEX5L Silent p.A519A 0.21 TCGA-CG-4460-01 3 179754447 179754447 T G PEX5L 5'UTR 0.21 TCGA-CG-4460-01 3 183667837 183667837 G A ABCC5 Silent p.I1007I 0.51 TCGA-CG-4460-01 3 183888411 183888411 C T DVL3 Silent p.P673P 0.52 TCGA-CG-4460-01 3 183898692 183898692 G A AP2M1 Missense_Mutation p.R162Q 0.55 deleterious(0) possibly_damaging(0.846) TCGA-CG-4460-01 3 184042671 184042671 G A EIF4G1 Silent p.E882E 0.21 TCGA-CG-4460-01 3 193023408 193023408 G C ATP13A5 Missense_Mutation p.S873C 0.39 deleterious(0) probably_damaging(0.987) TCGA-CG-4460-01 3 19322736 19322736 A C KCNH8 Missense_Mutation p.E119D 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-CG-4460-01 3 194140681 194140682 - A ATP13A3 Frame_Shift_Ins p.S1110Ffs*21 0.39 TCGA-CG-4460-01 3 195595367 195595367 G A TNK2 Missense_Mutation p.A664V 0.64 tolerated(0.15) benign(0.016) TCGA-CG-4460-01 3 195974305 195974305 C T PCYT1A Missense_Mutation p.R140H 0.44 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 3 195997296 195997296 C T PCYT1A Missense_Mutation p.R36H 0.50 tolerated(0.26) benign(0.003) TCGA-CG-4460-01 3 196387174 196387174 C T NRROS Silent p.I220I 0.25 TCGA-CG-4460-01 3 197239185 197239185 G - BDH1 Frame_Shift_Del p.R205Afs*11 0.20 TCGA-CG-4460-01 3 21462662 21462663 - T ZNF385D 3'UTR 0.24 TCGA-CG-4460-01 3 3078938 3078938 G A CNTN4 Missense_Mutation p.R673H 0.20 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 3 31871582 31871582 C T OSBPL10 Missense_Mutation p.A227T 0.27 tolerated(0.39) possibly_damaging(0.509) TCGA-CG-4460-01 3 33038803 33038803 G A GLB1 Missense_Mutation p.R590C 0.40 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 3 369870 369870 G A CHL1 Missense_Mutation p.G73D 0.43 tolerated(0.3) benign(0.017) TCGA-CG-4460-01 3 38263141 38263141 G A OXSR1 Missense_Mutation p.G188D 0.13 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 3 39230773 39230773 C T XIRP1 Missense_Mutation p.R55H 0.29 deleterious(0) probably_damaging(0.981) TCGA-CG-4460-01 3 39374486 39374486 C A CCR8 Missense_Mutation p.L222M 0.49 deleterious(0.01) probably_damaging(0.986) TCGA-CG-4460-01 3 41860993 41861014 TTCTTCCTAAAATGAAGTGGGA CTTCCTAAAATGAAGTGGG ULK4 Splice_Site p.X589_splice 0.09 TCGA-CG-4460-01 3 42264785 42264785 C T TRAK1 Silent p.Y806Y 0.16 TCGA-CG-4460-01 3 42728197 42728197 G A KLHL40 Missense_Mutation p.V363M 0.31 deleterious(0) probably_damaging(0.944) TCGA-CG-4460-01 3 42835658 42835658 C T HIGD1A Missense_Mutation p.V44I 0.42 tolerated(0.08) benign(0.416) TCGA-CG-4460-01 3 44856549 44856549 C T KIF15 Missense_Mutation p.L844F 0.21 tolerated(0.15) possibly_damaging(0.851) TCGA-CG-4460-01 3 44968294 44968294 T - ZDHHC3 Frame_Shift_Del p.T291Qfs*4 0.28 TCGA-CG-4460-01 3 45000645 45000645 C T ZDHHC3 Missense_Mutation p.C95Y 0.33 tolerated(0.07) benign(0.392) TCGA-CG-4460-01 3 46062638 46062638 C T XCR1 Missense_Mutation p.A268T 0.20 deleterious(0) probably_damaging(0.966) TCGA-CG-4460-01 3 46542209 46542209 A C RTP3 Silent p.P173P 0.48 TCGA-CG-4460-01 3 4699938 4699938 G A ITPR1 Missense_Mutation p.R361H 0.44 tolerated(0.06) possibly_damaging(0.877) TCGA-CG-4460-01 3 47604204 47604204 G A CSPG5 Silent p.C529C 0.07 TCGA-CG-4460-01 3 47619349 47619349 G A CSPG5 Missense_Mutation p.A56V 0.56 tolerated_low_confidence(0.05) benign(0.065) TCGA-CG-4460-01 3 47889959 47889959 G A DHX30 Missense_Mutation p.A832T 0.20 deleterious(0.01) possibly_damaging(0.76) TCGA-CG-4460-01 3 4859858 4859858 G A ITPR1 Missense_Mutation p.V2639I 0.28 deleterious(0.01) benign(0.136) TCGA-CG-4460-01 3 48613861 48613861 C T COL7A1 Missense_Mutation p.R1915H 0.20 unknown(0) TCGA-CG-4460-01 3 48624475 48624475 G A COL7A1 Missense_Mutation p.A1069V 0.20 unknown(0) TCGA-CG-4460-01 3 48627984 48627984 C T COL7A1 Missense_Mutation p.R605Q 0.55 unknown(0) TCGA-CG-4460-01 3 49137813 49137813 C T QARS Missense_Mutation p.R352K 0.43 tolerated(0.7) possibly_damaging(0.764) TCGA-CG-4460-01 3 49162453 49162453 C T LAMB2 Missense_Mutation p.R957Q 0.19 tolerated(0.48) benign(0.006) TCGA-CG-4460-01 3 49689184 49689184 G A BSN Missense_Mutation p.R732Q 0.25 unknown(0) TCGA-CG-4460-01 3 49690800 49690800 C T BSN Missense_Mutation p.R1271W 0.20 unknown(0) TCGA-CG-4460-01 3 49700310 49700310 G A BSN Silent p.A3573A 0.14 TCGA-CG-4460-01 3 49700781 49700781 C T BSN Silent p.S3730S 0.22 TCGA-CG-4460-01 3 49881302 49881302 G A TRAIP Missense_Mutation p.R114C 0.23 deleterious(0) possibly_damaging(0.841) TCGA-CG-4460-01 3 50339807 50339807 C T HYAL1 Missense_Mutation p.R194H 0.48 deleterious(0.02) probably_damaging(0.995) TCGA-CG-4460-01 3 50677912 50677912 G A MAPKAPK3 Missense_Mutation p.R112H 0.21 deleterious(0) benign(0.148) TCGA-CG-4460-01 3 51263169 51263169 A G DOCK3 Missense_Mutation p.M448V 0.25 tolerated(1) benign(0.008) TCGA-CG-4460-01 3 51297728 51297728 C T DOCK3 Nonsense_Mutation p.R776* 0.52 TCGA-CG-4460-01 3 51417604 51417604 C - DOCK3 Frame_Shift_Del p.P1852Qfs*45 0.50 TCGA-CG-4460-01 3 51672266 51672266 C T RAD54L2 Missense_Mutation p.R597C 0.19 deleterious(0.03) benign(0.236) TCGA-CG-4460-01 3 51743220 51743220 G A GRM2 Missense_Mutation p.R74H 0.40 tolerated(0.09) benign(0.009) TCGA-CG-4460-01 3 52526377 52526377 G A NISCH Missense_Mutation p.R1465H 0.44 tolerated(0.1) benign(0.001) TCGA-CG-4460-01 3 53213676 53213676 C T PRKCD Missense_Mutation p.R67C 0.29 deleterious(0) probably_damaging(0.999) TCGA-CG-4460-01 3 54952676 54952676 C T LRTM1 Missense_Mutation p.R283H 0.39 deleterious(0) probably_damaging(0.999) TCGA-CG-4460-01 3 54961972 54961972 G A LRTM1 5'UTR 0.18 TCGA-CG-4460-01 3 57132102 57132102 G A IL17RD Silent p.Y543Y 0.34 TCGA-CG-4460-01 3 58368271 58368271 A - PXK Frame_Shift_Del p.K79Nfs*2 0.27 TCGA-CG-4460-01 3 64085079 64085079 C T PRICKLE2 Missense_Mutation p.R728H 0.43 tolerated(0.32) benign(0.001) TCGA-CG-4460-01 3 64132682 64132682 C T PRICKLE2 Missense_Mutation p.R495Q 0.26 tolerated(0.22) benign(0.013) TCGA-CG-4460-01 3 64587682 64587682 C T ADAMTS9 Missense_Mutation p.A1319T 0.47 tolerated(0.45) benign(0.001) TCGA-CG-4460-01 3 65342134 65342134 C T MAGI1 Silent p.Q1436Q 0.23 TCGA-CG-4460-01 3 67546341 67546341 C T SUCLG2 Missense_Mutation p.A315T 0.48 deleterious(0) probably_damaging(0.999) TCGA-CG-4460-01 3 67559237 67559237 C G SUCLG2 Missense_Mutation p.G251R 0.12 deleterious(0) probably_damaging(0.941) TCGA-CG-4460-01 3 73433934 73433934 C T PDZRN3 Missense_Mutation p.A595T 0.36 tolerated(0.34) benign(0.002) TCGA-CG-4460-01 3 9476546 9476546 G A SETD5 Missense_Mutation p.R123Q 0.19 deleterious(0.01) probably_damaging(0.996) TCGA-CG-4460-01 3 9952555 9952555 C T IL17RE Missense_Mutation p.S270L 0.21 tolerated(0.11) benign(0.02) TCGA-CG-4460-01 3 99568705 99568706 - T FILIP1L Frame_Shift_Ins p.N605Kfs*20 0.34 TCGA-CG-4460-01 4 100257923 100257923 C T ADH1C Missense_Mutation p.V372I 0.31 benign(0.006) TCGA-CG-4460-01 4 100463220 100463220 A G C4orf17 Missense_Mutation p.N345S 0.16 tolerated(0.46) benign(0.011) TCGA-CG-4460-01 4 10084764 10084764 C T WDR1 Missense_Mutation p.A360T 0.23 tolerated(0.51) benign(0.002) TCGA-CG-4460-01 4 1018336 1018336 A G FGFRL1 Missense_Mutation p.Y319C 0.45 deleterious(0) probably_damaging(0.999) TCGA-CG-4460-01 4 101947156 101947156 G A PPP3CA Nonsense_Mutation p.R478* 0.49 TCGA-CG-4460-01 4 103822330 103822330 G A SLC9B1 Missense_Mutation p.R498C 0.03 tolerated(0.07) benign(0.063) TCGA-CG-4460-01 4 110754440 110754440 C A RRH Silent p.A84A 0.18 TCGA-CG-4460-01 4 11401091 11401091 C G HS3ST1 Missense_Mutation p.R180P 0.28 tolerated(0.26) possibly_damaging(0.668) TCGA-CG-4460-01 4 115997706 115997706 C T NDST4 Missense_Mutation p.G163S 0.30 tolerated(0.08) probably_damaging(0.998) TCGA-CG-4460-01 4 119234410 119234410 C T PRSS12 Missense_Mutation p.E479K 0.19 deleterious(0.04) possibly_damaging(0.867) TCGA-CG-4460-01 4 119754887 119754887 A G SEC24D 5'UTR 0.24 TCGA-CG-4460-01 4 121957271 121957271 A G NDNF 3'UTR 0.22 TCGA-CG-4460-01 4 122853805 122853805 C A TRPC3 Missense_Mutation p.S203I 0.39 deleterious(0.01) benign(0.17) TCGA-CG-4460-01 4 123271208 123271209 - A KIAA1109 Frame_Shift_Ins p.S4612Kfs*8 0.37 TCGA-CG-4460-01 4 126239464 126239464 G A FAT4 Missense_Mutation p.R633H 0.20 probably_damaging(0.999) TCGA-CG-4460-01 4 128685410 128685410 T C SLC25A31 Missense_Mutation p.F125L 0.24 deleterious(0.04) benign(0.22) TCGA-CG-4460-01 4 128726846 128726846 C T HSPA4L Missense_Mutation p.A381V 0.29 deleterious(0) probably_damaging(0.983) TCGA-CG-4460-01 4 1360198 1360198 G A UVSSA Missense_Mutation p.D423N 0.23 deleterious(0.04) benign(0.081) TCGA-CG-4460-01 4 139101903 139101903 G A SLC7A11 Silent p.D386D 0.21 TCGA-CG-4460-01 4 143007332 143007332 T - INPP4B Frame_Shift_Del p.R818Efs*4 0.26 TCGA-CG-4460-01 4 144134834 144134834 G T USP38 Missense_Mutation p.A569S 0.26 tolerated(0.99) benign(0.006) TCGA-CG-4460-01 4 145580917 145580917 T C HHIP Missense_Mutation p.I253T 0.21 tolerated(0.31) probably_damaging(0.979) TCGA-CG-4460-01 4 146823705 146823705 G A ZNF827 Nonsense_Mutation p.R236* 0.55 TCGA-CG-4460-01 4 148594936 148594936 C T PRMT10 Missense_Mutation p.R143H 0.46 deleterious(0.01) probably_damaging(0.999) TCGA-CG-4460-01 4 151392889 151392889 C T LRBA Missense_Mutation p.R2196H 0.19 deleterious(0.02) probably_damaging(0.984) TCGA-CG-4460-01 4 151656449 151656449 C T LRBA Silent p.R1905R 0.20 TCGA-CG-4460-01 4 151818931 151818931 C T LRBA Missense_Mutation p.R655Q 0.25 deleterious(0) probably_damaging(0.992) TCGA-CG-4460-01 4 152679925 152679925 G A PET112 Missense_Mutation p.P109L 0.21 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 4 154236715 154236715 C T TRIM2 Missense_Mutation p.A530V 0.16 tolerated(0.13) probably_damaging(0.991) TCGA-CG-4460-01 4 154256139 154256139 G A TRIM2 3'UTR 0.22 TCGA-CG-4460-01 4 154519878 154519878 C T KIAA0922 Missense_Mutation p.R754C 0.14 deleterious(0) probably_damaging(0.969) TCGA-CG-4460-01 4 154523755 154523755 G A KIAA0922 Missense_Mutation p.D839N 0.47 tolerated(0.2) benign(0.031) TCGA-CG-4460-01 4 15477538 15477538 G A CC2D2A 5'UTR 0.53 TCGA-CG-4460-01 4 155670426 155670426 C T LRAT 3'UTR 0.40 TCGA-CG-4460-01 4 156710921 156710921 C A GUCY1B3 Missense_Mutation p.P118H 0.22 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 4 156841058 156841058 G A TDO2 Silent p.P379P 0.42 TCGA-CG-4460-01 4 157684302 157684302 G A PDGFC Silent p.D326D 0.21 TCGA-CG-4460-01 4 158262473 158262475 CTC - GRIA2 In_Frame_Del p.S636del 0.45 TCGA-CG-4460-01 4 158284024 158284024 C T GRIA2 Missense_Mutation p.A827V 0.26 deleterious(0) probably_damaging(0.999) TCGA-CG-4460-01 4 159624729 159624729 A G ETFDH Missense_Mutation p.Q424R 0.20 tolerated(0.4) benign(0.022) TCGA-CG-4460-01 4 15964408 15964408 G A FGFBP2 Silent p.S115S 0.43 TCGA-CG-4460-01 4 1643243 1643243 C T FAM53A Missense_Mutation p.C325Y 0.13 tolerated(0.1) benign(0.02) TCGA-CG-4460-01 4 1809305 1809305 G A FGFR3 3'UTR 0.27 TCGA-CG-4460-01 4 184368679 184368679 T - CDKN2AIP 3'UTR 0.27 TCGA-CG-4460-01 4 185012492 185012492 G A ENPP6 Silent p.D387D 0.41 TCGA-CG-4460-01 4 185033921 185033921 G A ENPP6 Silent p.Y299Y 0.15 TCGA-CG-4460-01 4 186112045 186112045 T - KIAA1430 Frame_Shift_Del p.K102Nfs*23 0.23 TCGA-CG-4460-01 4 186318335 186318335 G T ANKRD37 Missense_Mutation p.G20V 0.35 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 4 186318402 186318402 C T ANKRD37 Silent p.G42G 0.38 TCGA-CG-4460-01 4 186544615 186544615 G A SORBS2 Silent p.H752H 0.25 TCGA-CG-4460-01 4 186545198 186545198 C T SORBS2 Missense_Mutation p.R558H 0.25 tolerated(0.66) probably_damaging(0.998) TCGA-CG-4460-01 4 187197457 187197457 C T F11 Missense_Mutation p.A223V 0.17 tolerated(0.36) benign(0.009) TCGA-CG-4460-01 4 187531035 187531035 C T FAT1 Missense_Mutation p.D3330N 0.25 probably_damaging(1) TCGA-CG-4460-01 4 187540073 187540073 C T FAT1 Missense_Mutation p.R2556Q 0.20 probably_damaging(1) TCGA-CG-4460-01 4 187627747 187627747 C T FAT1 Missense_Mutation p.V1079I 0.39 benign(0.013) TCGA-CG-4460-01 4 189020185 189020185 T C TRIML2 Intron 0.14 TCGA-CG-4460-01 4 1918627 1918627 G A WHSC1 Missense_Mutation p.V264I 0.52 tolerated(0.08) possibly_damaging(0.832) TCGA-CG-4460-01 4 1962801 1962801 G A WHSC1 Missense_Mutation p.E1099K 0.19 deleterious(0) probably_damaging(0.996) TCGA-CG-4460-01 4 20482349 20482349 T C SLIT2 Missense_Mutation p.Y160H 0.27 tolerated(0.44) probably_damaging(0.999) TCGA-CG-4460-01 4 22389934 22389934 C T GPR125 Silent p.A1120A 0.27 TCGA-CG-4460-01 4 2240485 2240485 G A HAUS3 Missense_Mutation p.R399W 0.18 tolerated(0.17) benign(0.019) TCGA-CG-4460-01 4 3137631 3137631 G A HTT Silent p.R878R 0.49 TCGA-CG-4460-01 4 3142344 3142344 C T HTT Missense_Mutation p.T969M 0.51 possibly_damaging(0.507) TCGA-CG-4460-01 4 3317958 3317958 C T RGS12 Missense_Mutation p.R21W 0.22 deleterious(0) probably_damaging(0.999) TCGA-CG-4460-01 4 3344688 3344688 G T RGS12 Nonsense_Mutation p.G636* 0.20 TCGA-CG-4460-01 4 38097685 38097685 A - TBC1D1 Frame_Shift_Del p.M793Cfs*21 0.23 TCGA-CG-4460-01 4 38799468 38799468 T C TLR1 Missense_Mutation p.K329E 0.42 tolerated(1) benign(0.014) TCGA-CG-4460-01 4 39306531 39306531 G A RFC1 Silent p.Y672Y 0.22 TCGA-CG-4460-01 4 41266131 41266131 C T UCHL1 Missense_Mutation p.P180S 0.42 tolerated(0.41) benign(0.012) TCGA-CG-4460-01 4 4190647 4190647 C A OTOP1 Missense_Mutation p.E574D 0.13 deleterious(0.01) probably_damaging(0.997) TCGA-CG-4460-01 4 42416687 42416687 G A ATP8A1 Silent p.H1118H 0.40 TCGA-CG-4460-01 4 46264100 46264100 C T GABRA2 Missense_Mutation p.R301Q 0.25 deleterious(0) probably_damaging(0.988) TCGA-CG-4460-01 4 47938555 47938555 C T CNGA1 Silent p.Q721Q 0.19 TCGA-CG-4460-01 4 47939172 47939172 T - CNGA1 Frame_Shift_Del p.T516Qfs*8 0.25 TCGA-CG-4460-01 4 53579422 53579422 T - SNORA26 RNA 0.15 TCGA-CG-4460-01 4 55127488 55127488 G A PDGFRA Silent p.A92A 0.23 TCGA-CG-4460-01 4 57221419 57221419 A G AASDH Silent p.Y344Y 0.20 TCGA-CG-4460-01 4 57829782 57829782 C T NOA1 Missense_Mutation p.R644Q 0.17 deleterious(0.03) probably_damaging(0.995) TCGA-CG-4460-01 4 68928756 68928756 C T TMPRSS11F Intron 0.47 TCGA-CG-4460-01 4 69179954 69179954 G A YTHDC1 Missense_Mutation p.R683W 0.46 deleterious_low_confidence(0.02) unknown(0) TCGA-CG-4460-01 4 69180007 69180007 C T YTHDC1 Missense_Mutation p.R665H 0.39 tolerated(0.09) benign(0.067) TCGA-CG-4460-01 4 69185922 69185922 G A YTHDC1 Missense_Mutation p.R535C 0.15 deleterious(0.02) benign(0.035) TCGA-CG-4460-01 4 6925152 6925152 C T TBC1D14 Silent p.G12G 0.35 TCGA-CG-4460-01 4 71889287 71889287 C A DCK Missense_Mutation p.A138E 0.35 deleterious(0) probably_damaging(0.971) TCGA-CG-4460-01 4 73414445 73414445 G A ADAMTS3 Missense_Mutation p.T85M 0.26 deleterious(0) probably_damaging(0.982) TCGA-CG-4460-01 4 78666019 78666019 C T CNOT6L Silent p.T190T 0.32 TCGA-CG-4460-01 4 84403394 84403394 C T FAM175A Missense_Mutation p.G31S 0.07 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 4 85416952 85416952 G A NKX6-1 Missense_Mutation p.T239M 0.21 deleterious(0) unknown(0) TCGA-CG-4460-01 4 96469950 96469950 A G UNC5C Missense_Mutation p.L20P 0.23 tolerated_low_confidence(0.11) possibly_damaging(0.766) TCGA-CG-4460-01 5 101794149 101794149 A - SLCO6A1 Frame_Shift_Del p.F356Lfs*8 0.21 TCGA-CG-4460-01 5 10377927 10377927 C T MARCH6 Missense_Mutation p.R13W 0.25 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 5 1074767 1074767 C T SLC12A7 Missense_Mutation p.D663N 0.48 deleterious(0) probably_damaging(0.982) TCGA-CG-4460-01 5 11117589 11117589 C T CTNND2 Silent p.A750A 0.36 TCGA-CG-4460-01 5 112769899 112769899 G T TSSK1B Missense_Mutation p.S213Y 0.21 tolerated(0.2) benign(0.125) TCGA-CG-4460-01 5 115320327 115320327 C T AQPEP Missense_Mutation p.T300M 0.17 deleterious(0) probably_damaging(0.999) TCGA-CG-4460-01 5 1268637 1268637 G A TERT Silent p.D860D 0.33 TCGA-CG-4460-01 5 127647028 127647028 C A FBN2 Missense_Mutation p.G1680C 0.50 deleterious(0) probably_damaging(0.991) TCGA-CG-4460-01 5 131396447 131396447 C T IL3 Silent p.P16P 0.40 TCGA-CG-4460-01 5 131993925 131993925 C T IL13 Missense_Mutation p.A16V 0.39 deleterious(0) unknown(0) TCGA-CG-4460-01 5 135382999 135382999 G A TGFBI Missense_Mutation p.D221N 0.46 tolerated(1) probably_damaging(0.998) TCGA-CG-4460-01 5 135692997 135692997 G A TRPC7 Missense_Mutation p.R27W 0.45 deleterious(0.02) benign(0.261) TCGA-CG-4460-01 5 137506848 137506848 G A BRD8 Missense_Mutation p.R80W 0.19 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 5 137682725 137682725 G - FAM53C 3'UTR 0.31 TCGA-CG-4460-01 5 137756625 137756625 C - KDM3B Frame_Shift_Del p.P1317Rfs*10 0.19 TCGA-CG-4460-01 5 13792325 13792325 A T DNAH5 Silent p.G2742G 0.07 TCGA-CG-4460-01 5 140209019 140209019 T C PCDHA6 Missense_Mutation p.M448T 0.46 deleterious_low_confidence(0) benign(0.002) TCGA-CG-4460-01 5 140209848 140209848 G A PCDHA6 Silent p.S724S 0.30 TCGA-CG-4460-01 5 140215905 140215905 G A PCDHA7 Missense_Mutation p.R646H 0.44 deleterious_low_confidence(0.04) benign(0.152) TCGA-CG-4460-01 5 140229442 140229442 G A PCDHA9 Silent p.A454A 0.16 TCGA-CG-4460-01 5 140229458 140229458 T C PCDHA9 Missense_Mutation p.Y460H 0.20 deleterious_low_confidence(0.02) benign(0.4) TCGA-CG-4460-01 5 140256399 140256399 G A PCDHA12 Missense_Mutation p.V448M 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.743) TCGA-CG-4460-01 5 140475611 140475611 C T PCDHB2 Missense_Mutation p.R413W 0.43 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CG-4460-01 5 140503193 140503193 C T PCDHB4 Missense_Mutation p.P538L 0.40 deleterious_low_confidence(0) probably_damaging(0.975) TCGA-CG-4460-01 5 140514942 140514942 C T PCDHB5 5'UTR 0.50 TCGA-CG-4460-01 5 140516326 140516326 C T PCDHB5 Missense_Mutation p.T437M 0.19 deleterious_low_confidence(0.01) benign(0.319) TCGA-CG-4460-01 5 140554050 140554050 C T PCDHB7 Missense_Mutation p.A545V 0.15 tolerated_low_confidence(0.06) benign(0.217) TCGA-CG-4460-01 5 140580140 140580140 T G PCDHB11 Missense_Mutation p.S265A 0.23 deleterious_low_confidence(0) possibly_damaging(0.626) TCGA-CG-4460-01 5 140589821 140589821 G A PCDHB12 Missense_Mutation p.A448T 0.27 deleterious_low_confidence(0.02) benign(0.031) TCGA-CG-4460-01 5 140683405 140683405 C T SLC25A2 Missense_Mutation p.A10T 0.51 tolerated(0.41) benign(0.048) TCGA-CG-4460-01 5 140720625 140720625 C T PCDHGA2 Missense_Mutation p.A696V 0.41 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-CG-4460-01 5 140735325 140735325 C T PCDHGA4 Silent p.A186A 0.25 TCGA-CG-4460-01 5 140751489 140751489 C T PCDHGB3 Missense_Mutation p.R510W 0.50 deleterious(0) possibly_damaging(0.605) TCGA-CG-4460-01 5 140762611 140762611 G A PCDHGA7 Missense_Mutation p.A49T 0.32 deleterious_low_confidence(0.03) benign(0.179) TCGA-CG-4460-01 5 140763255 140763255 G A PCDHGA7 Silent p.T263T 0.20 TCGA-CG-4460-01 5 140890602 140890602 C T PCDHGB6 Silent p.H885H 0.45 TCGA-CG-4460-01 5 141242997 141242997 G A PCDH1 Missense_Mutation p.R967C 0.22 deleterious(0.02) benign(0.081) TCGA-CG-4460-01 5 141325259 141325259 G A PCDH12 Missense_Mutation p.T1081M 0.46 tolerated(0.09) benign(0) TCGA-CG-4460-01 5 141325309 141325309 G T PCDH12 Silent p.P1064P 0.22 TCGA-CG-4460-01 5 1441511 1441511 C A SLC6A3 Silent p.G127G 0.44 TCGA-CG-4460-01 5 14602314 14602314 G A FAM105A Missense_Mutation p.R124Q 0.53 tolerated(0.12) benign(0.059) TCGA-CG-4460-01 5 147492431 147492431 C G SPINK5 Missense_Mutation p.F607L 0.19 tolerated(0.13) possibly_damaging(0.686) TCGA-CG-4460-01 5 149323840 149323840 C T PDE6A Missense_Mutation p.V133I 0.15 tolerated(0.08) probably_damaging(0.982) TCGA-CG-4460-01 5 149755011 149755011 C - TCOF1 Frame_Shift_Del p.S535Qfs*61 0.27 TCGA-CG-4460-01 5 150029294 150029294 G A SYNPO Missense_Mutation p.R730H 0.47 deleterious(0) probably_damaging(0.999) TCGA-CG-4460-01 5 150407078 150407078 T C GPX3 Missense_Mutation p.Y149H 0.17 deleterious(0) probably_damaging(0.979) TCGA-CG-4460-01 5 151045951 151045951 G A SPARC Silent p.F235F 0.48 TCGA-CG-4460-01 5 153857162 153857163 AG - HAND1 Frame_Shift_Del p.L136Afs*29 0.40 TCGA-CG-4460-01 5 154199997 154199997 T A FAXDC2 Missense_Mutation p.D294V 0.25 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 5 158140003 158140003 G A EBF1 Silent p.S448S 0.48 TCGA-CG-4460-01 5 15928344 15928344 G A FBXL7 Missense_Mutation p.R158H 0.47 tolerated(0.05) possibly_damaging(0.772) TCGA-CG-4460-01 5 15937192 15937192 C T FBXL7 Missense_Mutation p.T458M 0.19 tolerated(0.31) benign(0) TCGA-CG-4460-01 5 15937211 15937211 C T FBXL7 Silent p.C464C 0.14 TCGA-CG-4460-01 5 159665630 159665630 C T FABP6 Silent p.G166G 0.36 TCGA-CG-4460-01 5 159821324 159821324 G A C5orf54 Nonsense_Mutation p.Q392* 0.45 TCGA-CG-4460-01 5 160033840 160033840 G A ATP10B Missense_Mutation p.T1031M 0.31 deleterious(0) probably_damaging(0.999) TCGA-CG-4460-01 5 161580438 161580438 A C GABRG2 3'UTR 0.25 TCGA-CG-4460-01 5 16675074 16675074 G A MYO10 Missense_Mutation p.P1618S 0.25 tolerated(0.07) probably_damaging(0.999) TCGA-CG-4460-01 5 167674043 167674043 C T TENM2 Silent p.Y2033Y 0.21 TCGA-CG-4460-01 5 167674297 167674297 G A TENM2 Missense_Mutation p.R2118H 0.46 deleterious(0.04) possibly_damaging(0.873) TCGA-CG-4460-01 5 167689674 167689674 C T TENM2 Silent p.G2728G 0.50 TCGA-CG-4460-01 5 168112863 168112863 G T SLIT3 Nonsense_Mutation p.C1128* 0.15 TCGA-CG-4460-01 5 168112913 168112913 G A SLIT3 Missense_Mutation p.P1112S 0.36 tolerated(0.54) benign(0.031) TCGA-CG-4460-01 5 170337986 170337986 C A RANBP17 Missense_Mutation p.P203H 0.33 tolerated(0.1) probably_damaging(0.998) TCGA-CG-4460-01 5 170345805 170345805 T C RANBP17 Missense_Mutation p.V348A 0.58 tolerated(0.05) benign(0.001) TCGA-CG-4460-01 5 170883784 170883784 G A FGF18 Missense_Mutation p.R200Q 0.49 deleterious(0) possibly_damaging(0.884) TCGA-CG-4460-01 5 172315747 172315747 G A ERGIC1 Silent p.T22T 0.50 TCGA-CG-4460-01 5 17275821 17275821 G A BASP1 Missense_Mutation p.G166R 0.67 tolerated(0.21) probably_damaging(0.991) TCGA-CG-4460-01 5 173317681 173317681 A G CPEB4 Silent p.R315R 0.26 TCGA-CG-4460-01 5 176070674 176070674 C T EIF4E1B Missense_Mutation p.R79W 0.40 deleterious(0) probably_damaging(0.989) TCGA-CG-4460-01 5 176301281 176301281 C T UNC5A Silent p.L364L 0.25 TCGA-CG-4460-01 5 176323157 176323157 C T HK3 Missense_Mutation p.D2N 0.34 tolerated_low_confidence(0.11) benign(0.002) TCGA-CG-4460-01 5 176519354 176519354 G A FGFR4 Missense_Mutation p.G254R 0.41 deleterious(0.02) probably_damaging(1) TCGA-CG-4460-01 5 176952097 176952097 C T FAM193B Missense_Mutation p.R462Q 0.32 tolerated(0.4) benign(0.022) TCGA-CG-4460-01 5 177309715 177309715 C T RP11-423H2.1 RNA 0.27 TCGA-CG-4460-01 5 178139553 178139553 T C ZNF354A Silent p.E442E 0.43 TCGA-CG-4460-01 5 178416364 178416364 C T GRM6 Missense_Mutation p.R352H 0.08 tolerated(0.15) benign(0.288) TCGA-CG-4460-01 5 178418555 178418555 C - GRM6 Frame_Shift_Del p.V243Sfs*21 0.23 TCGA-CG-4460-01 5 178551999 178551999 C T ADAMTS2 Missense_Mutation p.R978H 0.25 deleterious(0.05) benign(0.001) TCGA-CG-4460-01 5 179300246 179300246 T C TBC1D9B Missense_Mutation p.Y730C 0.20 deleterious(0.01) benign(0.047) TCGA-CG-4460-01 5 179301925 179301925 G A TBC1D9B Silent p.G721G 0.19 TCGA-CG-4460-01 5 1798716 1798716 C T MRPL36 3'UTR 0.50 TCGA-CG-4460-01 5 180377103 180377103 C T BTNL8 Silent p.R354R 0.76 TCGA-CG-4460-01 5 180475228 180475228 C T BTNL9 Silent p.S137S 0.29 TCGA-CG-4460-01 5 180664038 180664039 AG - GNB2L1 Frame_Shift_Del p.L298Vfs*? 0.19 TCGA-CG-4460-01 5 231070 231070 G T SDHA Missense_Mutation p.G284C 0.15 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-CG-4460-01 5 233710 233710 G A SDHA Silent p.A338A 0.28 TCGA-CG-4460-01 5 31493322 31493322 G T DROSHA Missense_Mutation p.L612M 0.15 deleterious(0) probably_damaging(0.99) TCGA-CG-4460-01 5 31799541 31799541 C - PDZD2 Frame_Shift_Del p.E65Kfs*21 0.46 TCGA-CG-4460-01 5 33527391 33527391 C T ADAMTS12 Missense_Mutation p.V1563M 0.65 deleterious(0) possibly_damaging(0.734) TCGA-CG-4460-01 5 36686195 36686195 C T SLC1A3 Silent p.L485L 0.64 TCGA-CG-4460-01 5 38438444 38438444 C T EGFLAM Missense_Mutation p.A784V 0.12 deleterious(0.02) possibly_damaging(0.604) TCGA-CG-4460-01 5 38924544 38924544 G A OSMR Missense_Mutation p.V631M 0.16 deleterious(0) probably_damaging(0.98) TCGA-CG-4460-01 5 41842798 41842798 C T OXCT1 Missense_Mutation p.R217Q 0.13 tolerated(0.09) benign(0.002) TCGA-CG-4460-01 5 41934430 41934430 T - FBXO4 Intron 0.13 TCGA-CG-4460-01 5 43039821 43039821 C T ANXA2R Missense_Mutation p.A110T 0.14 tolerated(0.09) benign(0.181) TCGA-CG-4460-01 5 43161499 43161499 G A ZNF131 Missense_Mutation p.E174K 0.65 deleterious(0.01) probably_damaging(0.994) TCGA-CG-4460-01 5 43161698 43161698 C T ZNF131 Missense_Mutation p.T240M 0.49 tolerated(0.24) benign(0.009) TCGA-CG-4460-01 5 480196 480196 G A SLC9A3 Intron 0.45 TCGA-CG-4460-01 5 52361675 52361675 T C ITGA2 Missense_Mutation p.I604T 0.17 deleterious(0) probably_damaging(0.988) TCGA-CG-4460-01 5 5476148 5476148 C T KIAA0947 Missense_Mutation p.A2159V 0.16 deleterious(0.01) possibly_damaging(0.906) TCGA-CG-4460-01 5 55202092 55202092 G A IL31RA Missense_Mutation p.A410T 0.24 tolerated(0.42) benign(0.006) TCGA-CG-4460-01 5 56189555 56189555 A - MAP3K1 3'UTR 0.28 TCGA-CG-4460-01 5 60195512 60195512 T C ERCC8 Silent p.S220S 0.19 TCGA-CG-4460-01 5 64050152 64050152 T - SREK1IP1 Frame_Shift_Del p.K17Nfs*8 0.20 TCGA-CG-4460-01 5 6739923 6739923 C T PAPD7 Silent p.N72N 0.20 TCGA-CG-4460-01 5 68715902 68715902 G A MARVELD2 Silent p.P230P 0.16 TCGA-CG-4460-01 5 72419288 72419288 G A TMEM171 Missense_Mutation p.A30T 0.27 deleterious(0.01) possibly_damaging(0.871) TCGA-CG-4460-01 5 75927724 75927724 A - IQGAP2 Frame_Shift_Del p.K553Nfs*9 0.28 TCGA-CG-4460-01 5 75989260 75989260 C T IQGAP2 Missense_Mutation p.A1329V 0.40 tolerated(0.23) benign(0.004) TCGA-CG-4460-01 5 78076234 78076234 C T ARSB Missense_Mutation p.G530S 0.22 tolerated(0.14) possibly_damaging(0.46) TCGA-CG-4460-01 5 78376543 78376543 G A BHMT2 Missense_Mutation p.A98T 0.43 deleterious(0) probably_damaging(0.958) TCGA-CG-4460-01 5 78416205 78416205 C T BHMT Silent p.I106I 0.41 TCGA-CG-4460-01 5 7866895 7866895 G A FASTKD3 Silent p.N434N 0.15 TCGA-CG-4460-01 5 7873574 7873574 T G MTRR Missense_Mutation p.V100G 0.23 deleterious(0) probably_damaging(0.981) TCGA-CG-4460-01 5 79733734 79733734 A G ZFYVE16 Silent p.A410A 0.25 TCGA-CG-4460-01 5 80641746 80641746 C T ACOT12 Missense_Mutation p.R244H 0.26 deleterious(0.04) possibly_damaging(0.597) TCGA-CG-4460-01 5 82948434 82948434 T - HAPLN1 Frame_Shift_Del p.T104Pfs*11 0.26 TCGA-CG-4460-01 5 86674344 86674344 C T RASA1 Nonsense_Mutation p.Q826* 0.15 TCGA-CG-4460-01 5 89947441 89947441 T C GPR98 Missense_Mutation p.Y1104H 0.43 benign(0) TCGA-CG-4460-01 5 89954001 89954001 G A GPR98 Missense_Mutation p.R1553H 0.29 benign(0.001) TCGA-CG-4460-01 5 90106341 90106342 - T GPR98 Frame_Shift_Ins p.Y5091Lfs*3 0.43 TCGA-CG-4460-01 5 9136623 9136623 G A SEMA5A Missense_Mutation p.A531V 0.44 tolerated(0.41) benign(0.001) TCGA-CG-4460-01 5 93076968 93076968 G A POU5F2 Missense_Mutation p.P101L 0.38 tolerated(0.24) benign(0) TCGA-CG-4460-01 5 93856536 93856537 - A KIAA0825 Frame_Shift_Ins p.S131Ifs*13 0.16 TCGA-CG-4460-01 5 95072635 95072635 G - RHOBTB3 Frame_Shift_Del p.G92Afs*6 0.25 TCGA-CG-4460-01 6 101054868 101054868 G A ASCC3 Nonsense_Mutation p.R1628* 0.23 TCGA-CG-4460-01 6 10557410 10557410 C - GCNT2 Intron 0.50 TCGA-CG-4460-01 6 105606568 105606568 T C POPDC3 Missense_Mutation p.Y218C 0.23 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 6 105726225 105726225 G A PREP Missense_Mutation p.R643C 0.21 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 6 10731012 10731012 A - TMEM14C 3'UTR 0.68 TCGA-CG-4460-01 6 107908370 107908370 C T SOBP Silent p.C220C 0.42 TCGA-CG-4460-01 6 107955624 107955624 C T SOBP Missense_Mutation p.P526S 0.24 deleterious(0) probably_damaging(0.998) TCGA-CG-4460-01 6 10796375 10796375 T C MAK Silent p.G333G 0.09 TCGA-CG-4460-01 6 10874462 10874462 G T GCM2 Silent p.P429P 0.10 TCGA-CG-4460-01 6 10874821 10874821 G A GCM2 Silent p.L310L 0.13 TCGA-CG-4460-01 6 111696826 111696826 C T REV3L Missense_Mutation p.G911E 0.24 tolerated(0.13) benign(0.188) TCGA-CG-4460-01 6 112430582 112430582 T C LAMA4 3'UTR 0.50 TCGA-CG-4460-01 6 116879071 116879072 CT - FAM26D Frame_Shift_Del p.L73Afs*12 0.27 TCGA-CG-4460-01 6 127796980 127796980 A G SOGA3 Missense_Mutation p.S731P 0.51 deleterious(0) probably_damaging(0.999) TCGA-CG-4460-01 6 131915355 131915355 G A MED23 Missense_Mutation p.P1039L 0.44 tolerated(0.1) benign(0.094) TCGA-CG-4460-01 6 131917158 131917158 A - MED23 Frame_Shift_Del p.L975* 0.18 TCGA-CG-4460-01 6 135239851 135239851 G A ALDH8A1 Missense_Mutation p.T389M 0.51 deleterious(0.02) benign(0.105) TCGA-CG-4460-01 6 13622649 13622649 G A RANBP9 Missense_Mutation p.A712V 0.14 deleterious(0.01) probably_damaging(0.978) TCGA-CG-4460-01 6 137323028 137323028 C T IL20RA Silent p.P443P 0.44 TCGA-CG-4460-01 6 138199687 138199687 G A TNFAIP3 Missense_Mutation p.A369T 0.37 tolerated(0.47) benign(0.002) TCGA-CG-4460-01 6 139488146 139488147 - G HECA Frame_Shift_Ins p.H336Tfs*25 0.20 TCGA-CG-4460-01 6 139488290 139488290 C T HECA Missense_Mutation p.R381W 0.35 deleterious(0) probably_damaging(0.989) TCGA-CG-4460-01 6 142736194 142736194 T - GPR126 Frame_Shift_Del p.S879Qfs*6 0.15 TCGA-CG-4460-01 6 143086006 143086006 T - HIVEP2 Frame_Shift_Del p.K1816Nfs*27 0.19 TCGA-CG-4460-01 6 143094060 143094060 C T HIVEP2 Missense_Mutation p.V606M 0.20 tolerated(0.22) benign(0.003) TCGA-CG-4460-01 6 143095843 143095843 T - HIVEP2 Frame_Shift_Del p.A12Lfs*25 0.19 TCGA-CG-4460-01 6 144081696 144081696 A - PHACTR2 Frame_Shift_Del p.N207Ifs*80 0.42 TCGA-CG-4460-01 6 144086828 144086828 C T PHACTR2 Silent p.P375P 0.20 TCGA-CG-4460-01 6 144814587 144814587 G A UTRN Missense_Mutation p.A1530T 0.24 deleterious(0) probably_damaging(0.999) TCGA-CG-4460-01 6 148853974 148853974 C T SASH1 Missense_Mutation p.R536W 0.17 deleterious(0) probably_damaging(0.996) TCGA-CG-4460-01 6 149842224 149842224 C T PPIL4 Silent p.S318S 0.17 TCGA-CG-4460-01 6 150157316 150157316 G T LRP11 Missense_Mutation p.T386N 0.21 tolerated(0.13) benign(0.156) TCGA-CG-4460-01 6 151152789 151152789 A - PLEKHG1 Frame_Shift_Del p.N849Mfs*15 0.16 TCGA-CG-4460-01 6 151161744 151161744 G A PLEKHG1 Silent p.S1290S 0.39 TCGA-CG-4460-01 6 152454426 152454426 C A SYNE1 Silent p.V8662V 0.12 TCGA-CG-4460-01 6 152461213 152461213 G A SYNE1 Nonsense_Mutation p.Q8444* 0.31 TCGA-CG-4460-01 6 152462385 152462385 C A SYNE1 Missense_Mutation p.S8400I 0.27 benign(0.032) TCGA-CG-4460-01 6 152464870 152464870 C T SYNE1 Missense_Mutation p.R8336Q 0.44 benign(0.006) TCGA-CG-4460-01 6 152751776 152751776 A - SYNE1 Frame_Shift_Del p.F1510Lfs*17 0.33 TCGA-CG-4460-01 6 153019117 153019117 T - MYCT1 Frame_Shift_Del p.F29Sfs*28 0.35 TCGA-CG-4460-01 6 154727708 154727708 C T CNKSR3 Missense_Mutation p.R483Q 0.38 tolerated_low_confidence(0.53) benign(0.005) TCGA-CG-4460-01 6 154762478 154762478 G A CNKSR3 Missense_Mutation p.T152M 0.20 tolerated(0.17) benign(0.176) TCGA-CG-4460-01 6 15512546 15512546 C T JARID2 Silent p.C1020C 0.11 TCGA-CG-4460-01 6 155776036 155776036 C T NOX3 Missense_Mutation p.R55Q 0.32 deleterious(0.01) possibly_damaging(0.892) TCGA-CG-4460-01 6 158363878 158363878 C T SNX9 3'UTR 0.40 TCGA-CG-4460-01 6 158492775 158492775 G T SYNJ2 Missense_Mutation p.K694N 0.11 tolerated(0.07) possibly_damaging(0.472) TCGA-CG-4460-01 6 158507968 158507968 C T SYNJ2 Missense_Mutation p.S1097L 0.43 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CG-4460-01 6 158516709 158516709 G A SYNJ2 Silent p.P1268P 0.19 TCGA-CG-4460-01 6 158516907 158516907 G A SYNJ2 Silent p.P1334P 0.23 TCGA-CG-4460-01 6 158902301 158902301 C T TULP4 Missense_Mutation p.P489L 0.27 deleterious(0) probably_damaging(0.999) TCGA-CG-4460-01 6 158924381 158924381 C T TULP4 Missense_Mutation p.P1229L 0.50 deleterious_low_confidence(0) benign(0.202) TCGA-CG-4460-01 6 159191890 159191890 G A EZR Silent p.T332T 0.23 TCGA-CG-4460-01 6 159653582 159653582 G A FNDC1 Missense_Mutation p.V680I 0.46 tolerated_low_confidence(0.19) unknown(0) TCGA-CG-4460-01 6 159672348 159672348 T C FNDC1 Missense_Mutation p.Y1617H 0.38 deleterious(0) probably_damaging(0.986) TCGA-CG-4460-01 6 160874436 160874436 G A SLC22A3 3'Flank 0.31 TCGA-CG-4460-01 6 160953680 160953680 A G LPA Silent p.G1948G 0.27 TCGA-CG-4460-01 6 161054940 161054940 C T LPA Silent p.P360P 0.24 TCGA-CG-4460-01 6 16130862 16130862 A G MYLIP Silent p.L54L 0.10 TCGA-CG-4460-01 6 16145303 16145303 G A MYLIP Missense_Mutation p.V335I 0.10 tolerated(0.8) benign(0) TCGA-CG-4460-01 6 16146931 16146931 G A MYLIP Silent p.Q429Q 0.74 TCGA-CG-4460-01 6 161470974 161470974 C T MAP3K4 Missense_Mutation p.A557V 0.38 deleterious(0) probably_damaging(0.91) TCGA-CG-4460-01 6 16290815 16290815 G A GMPR Missense_Mutation p.A274T 0.14 deleterious(0.01) possibly_damaging(0.732) TCGA-CG-4460-01 6 16306824 16306824 G A ATXN1 Silent p.N728N 0.71 TCGA-CG-4460-01 6 167719512 167719512 C T UNC93A Missense_Mutation p.T317M 0.24 deleterious(0.01) benign(0.271) TCGA-CG-4460-01 6 167728784 167728784 C T UNC93A Silent p.C406C 0.11 TCGA-CG-4460-01 6 168910766 168910766 G A SMOC2 Missense_Mutation p.D86N 0.42 tolerated(0.08) benign(0.255) TCGA-CG-4460-01 6 170657408 170657408 C T FAM120B Silent p.V729V 0.25 TCGA-CG-4460-01 6 17292175 17292175 C T RBM24 Missense_Mutation p.A179V 0.17 deleterious(0.04) benign(0.081) TCGA-CG-4460-01 6 18148086 18148086 A G TPMT Silent p.F67F 0.09 TCGA-CG-4460-01 6 20739811 20739811 C T CDKAL1 Missense_Mutation p.R145C 0.10 deleterious(0.01) possibly_damaging(0.893) TCGA-CG-4460-01 6 22569745 22569745 C T HDGFL1 5'Flank 0.69 TCGA-CG-4460-01 6 24423345 24423345 G A MRS2 Intron 0.54 TCGA-CG-4460-01 6 24456738 24456738 G A GPLD1 Missense_Mutation p.A379V 0.13 deleterious(0.03) benign(0.037) TCGA-CG-4460-01 6 24596739 24596739 C T KIAA0319 Missense_Mutation p.V55I 0.14 tolerated(0.21) benign(0.048) TCGA-CG-4460-01 6 26017548 26017548 T - HIST1H1A Frame_Shift_Del p.K138Sfs*38 0.49 TCGA-CG-4460-01 6 26199228 26199228 G A HIST1H2AD Nonsense_Mutation p.R82* 0.10 TCGA-CG-4460-01 6 26405755 26405755 C - BTN3A1 5'UTR 0.17 TCGA-CG-4460-01 6 28194987 28194987 G A ZSCAN9 Missense_Mutation p.R42H 0.08 tolerated(0.13) benign(0.005) TCGA-CG-4460-01 6 28200739 28200739 C T ZSCAN9 Missense_Mutation p.A374V 0.75 deleterious(0) possibly_damaging(0.841) TCGA-CG-4460-01 6 28542708 28542708 T - SCAND3 Frame_Shift_Del p.S592Afs*7 0.52 TCGA-CG-4460-01 6 29079899 29079899 A G OR2J3 Missense_Mutation p.T78A 0.66 deleterious(0.01) benign(0.113) TCGA-CG-4460-01 6 2948609 2948609 C T SERPINB6 Missense_Mutation p.D352N 0.65 tolerated(0.07) possibly_damaging(0.448) TCGA-CG-4460-01 6 30039064 30039064 G A RNF39 Missense_Mutation p.R363W 0.13 deleterious(0) probably_damaging(0.97) TCGA-CG-4460-01 6 30131328 30131331 TCTT - TRIM15 5'UTR 0.62 TCGA-CG-4460-01 6 30139971 30139971 G A TRIM15 Missense_Mutation p.V415M 0.74 deleterious(0.03) benign(0.304) TCGA-CG-4460-01 6 30550937 30550937 C T ABCF1 Missense_Mutation p.A296V 0.09 tolerated(0.05) benign(0.173) TCGA-CG-4460-01 6 30570116 30570116 G A PPP1R10 Silent p.H770H 0.14 TCGA-CG-4460-01 6 31324063 31324063 G A HLA-B Missense_Mutation p.T167I 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.746) TCGA-CG-4460-01 6 3154693 3154693 C T TUBB2A Missense_Mutation p.A248T 0.11 deleterious_low_confidence(0.02) benign(0.089) TCGA-CG-4460-01 6 31644883 31644883 C T LY6G5C Missense_Mutation p.V102I 0.67 tolerated(1) benign(0.001) TCGA-CG-4460-01 6 31746992 31746992 C T VARS Missense_Mutation p.A1160T 0.82 tolerated(0.45) benign(0.001) TCGA-CG-4460-01 6 32008352 32008352 G A CYP21A2 Missense_Mutation p.R370Q 0.09 tolerated(0.1) possibly_damaging(0.477) TCGA-CG-4460-01 6 32178635 32178635 G - NOTCH4 Frame_Shift_Del p.P920Lfs*12 0.27 TCGA-CG-4460-01 6 3273285 3273285 C T SLC22A23 3'UTR 0.67 TCGA-CG-4460-01 6 3273472 3273472 C T SLC22A23 Silent p.L626L 0.11 TCGA-CG-4460-01 6 32813442 32813442 G A TAP1 Missense_Mutation p.R781W 0.14 tolerated(0.1) benign(0.005) TCGA-CG-4460-01 6 33408670 33408670 A G SYNGAP1 Missense_Mutation p.Y614C 0.13 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 6 33555552 33555552 C T GGNBP1 Intron 0.14 TCGA-CG-4460-01 6 33659477 33659477 G A ITPR3 Silent p.S2437S 0.67 TCGA-CG-4460-01 6 33996039 33996039 C T GRM4 Silent p.P849P 0.14 TCGA-CG-4460-01 6 34826298 34826299 - C UHRF1BP1 Frame_Shift_Ins p.L724Pfs*40 0.15 TCGA-CG-4460-01 6 34839689 34839689 T G UHRF1BP1 Missense_Mutation p.V1395G 0.13 tolerated(0.41) benign(0.001) TCGA-CG-4460-01 6 35213838 35213838 C T SCUBE3 Missense_Mutation p.A906V 0.09 deleterious(0.01) probably_damaging(0.944) TCGA-CG-4460-01 6 35259393 35259393 C T ZNF76 Silent p.N270N 0.11 TCGA-CG-4460-01 6 35773519 35773519 C T LHFPL5 Silent p.A24A 0.13 TCGA-CG-4460-01 6 36867235 36867235 C T C6orf89 Silent p.A12A 0.12 TCGA-CG-4460-01 6 3737419 3737419 C T PXDC1 Silent p.S120S 0.70 TCGA-CG-4460-01 6 38835886 38835886 C T DNAH8 Missense_Mutation p.L2031F 0.12 probably_damaging(0.998) TCGA-CG-4460-01 6 39580979 39580979 G A KIF6 Nonsense_Mutation p.R209* 0.05 TCGA-CG-4460-01 6 39874300 39874300 G A MOCS1 3'UTR 0.16 TCGA-CG-4460-01 6 39895297 39895297 G T MOCS1 Silent p.L7L 0.78 TCGA-CG-4460-01 6 4133938 4133938 G A ECI2 Nonsense_Mutation p.Q20* 0.14 TCGA-CG-4460-01 6 42931280 42931280 C T GNMT Missense_Mutation p.R242W 0.13 deleterious(0) probably_damaging(0.998) TCGA-CG-4460-01 6 43155053 43155054 AG - CUL9 Frame_Shift_Del p.K487Efs*2 0.23 TCGA-CG-4460-01 6 43163827 43163827 C T CUL9 Silent p.V803V 0.19 TCGA-CG-4460-01 6 43251223 43251223 C T TTBK1 Silent p.G915G 0.26 TCGA-CG-4460-01 6 43592411 43592413 GAA - GTPBP2 In_Frame_Del p.F312del 0.13 TCGA-CG-4460-01 6 46656982 46656982 A G TDRD6 Missense_Mutation p.T373A 0.49 deleterious(0.03) probably_damaging(1) TCGA-CG-4460-01 6 46658609 46658609 A - TDRD6 Frame_Shift_Del p.N917Ifs*2 0.32 TCGA-CG-4460-01 6 46824635 46824635 A C GPR116 Missense_Mutation p.I1262S 0.07 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 6 46851913 46851913 G A GPR116 Missense_Mutation p.R142C 0.25 tolerated(0.18) benign(0.276) TCGA-CG-4460-01 6 48036112 48036112 G - PTCHD4 Frame_Shift_Del p.L94Wfs*21 0.38 TCGA-CG-4460-01 6 51524706 51524706 T C PKHD1 Silent p.K3406K 0.23 TCGA-CG-4460-01 6 51920455 51920455 C T PKHD1 Missense_Mutation p.R589H 0.09 tolerated(1) benign(0.001) TCGA-CG-4460-01 6 52355112 52355112 G A EFHC1 Silent p.S605S 0.45 TCGA-CG-4460-01 6 56325048 56325048 G A DST Missense_Mutation p.T5045M 0.43 probably_damaging(0.988) TCGA-CG-4460-01 6 56417016 56417016 G A DST Missense_Mutation p.T2902M 0.24 possibly_damaging(0.803) TCGA-CG-4460-01 6 56483956 56483956 G A DST Intron 0.21 TCGA-CG-4460-01 6 63990219 63990219 T C LGSN Missense_Mutation p.T413A 0.23 tolerated(0.94) benign(0.027) TCGA-CG-4460-01 6 64290032 64290032 C T PTP4A1 Missense_Mutation p.R159C 0.28 tolerated(0.19) benign(0.003) TCGA-CG-4460-01 6 70423650 70423650 C T LMBRD1 Missense_Mutation p.A268T 0.46 tolerated(0.63) benign(0.001) TCGA-CG-4460-01 6 70964854 70964854 G A COL9A1 Missense_Mutation p.T537M 0.47 benign(0.054) TCGA-CG-4460-01 6 7189437 7189437 G A RREB1 Missense_Mutation p.G103R 0.13 deleterious(0.01) possibly_damaging(0.741) TCGA-CG-4460-01 6 73000541 73000541 G A RIMS1 Silent p.A1238A 0.31 TCGA-CG-4460-01 6 7575663 7575663 G T DSP Nonsense_Mutation p.E858* 0.68 TCGA-CG-4460-01 6 7575669 7575669 G A DSP Missense_Mutation p.V860I 0.67 possibly_damaging(0.868) TCGA-CG-4460-01 6 76124575 76124576 - T FILIP1 Frame_Shift_Ins p.K39Efs*6 0.14 TCGA-CG-4460-01 6 76124598 76124598 T - FILIP1 Frame_Shift_Del p.S31Vfs*29 0.11 TCGA-CG-4460-01 6 79787212 79787212 G A PHIP Missense_Mutation p.R48C 0.17 deleterious(0) benign(0.232) TCGA-CG-4460-01 6 8026607 8026607 C T BLOC1S5 Missense_Mutation p.R126Q 0.68 tolerated(0.71) benign(0.004) TCGA-CG-4460-01 6 83848062 83848063 - T DOPEY1 Frame_Shift_Ins p.Y1436Lfs*2 0.23 TCGA-CG-4460-01 6 83848112 83848112 A G DOPEY1 Missense_Mutation p.M1451V 0.23 deleterious(0.02) benign(0.076) TCGA-CG-4460-01 6 86329116 86329116 C T SYNCRIP Missense_Mutation p.R343H 0.42 deleterious(0) probably_damaging(0.996) TCGA-CG-4460-01 6 87967789 87967789 G C ZNF292 Missense_Mutation p.S1481T 0.51 tolerated(0.16) benign(0.003) TCGA-CG-4460-01 6 88767395 88767395 C T SPACA1 Missense_Mutation p.R111W 0.26 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 6 89974265 89974265 C T GABRR2 Missense_Mutation p.V318I 0.46 tolerated(0.56) possibly_damaging(0.852) TCGA-CG-4460-01 6 90368550 90368550 C T MDN1 Missense_Mutation p.E4934K 0.23 unknown(0) TCGA-CG-4460-01 6 99771411 99771411 G A FAXC Silent p.R244R 0.43 TCGA-CG-4460-01 7 100247661 100247661 G A ACTL6B Missense_Mutation p.A156V 0.16 deleterious(0.04) possibly_damaging(0.595) TCGA-CG-4460-01 7 100405169 100405169 C T EPHB4 Missense_Mutation p.V718M 0.18 deleterious(0.03) probably_damaging(0.997) TCGA-CG-4460-01 7 100411288 100411288 T C EPHB4 Missense_Mutation p.Y581C 0.18 deleterious(0.01) probably_damaging(0.976) TCGA-CG-4460-01 7 100453339 100453339 C T SLC12A9 Missense_Mutation p.R110C 0.15 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 7 100491048 100491048 G A ACHE Missense_Mutation p.T269M 0.53 deleterious(0.03) probably_damaging(0.996) TCGA-CG-4460-01 7 100694940 100694940 G A MUC17 Silent p.T4307T 0.32 TCGA-CG-4460-01 7 100855927 100855927 G - PLOD3 Frame_Shift_Del p.R297Gfs*61 0.48 TCGA-CG-4460-01 7 103175866 103175866 G A RELN Missense_Mutation p.P2416S 0.23 tolerated(0.07) benign(0.006) TCGA-CG-4460-01 7 1037311 1037311 G - C7orf50 Frame_Shift_Del p.L179Cfs*136 0.22 TCGA-CG-4460-01 7 107315477 107315478 - A SLC26A4 Frame_Shift_Ins p.V231Sfs*29 0.20 TCGA-CG-4460-01 7 107763584 107763584 A - LAMB4 Frame_Shift_Del p.L9Cfs*43 0.33 TCGA-CG-4460-01 7 111398724 111398724 G A DOCK4 Nonsense_Mutation p.R1420* 0.44 TCGA-CG-4460-01 7 1131734 1131734 T C GPER1 Missense_Mutation p.Y124H 0.20 tolerated(0.08) probably_damaging(1) TCGA-CG-4460-01 7 11521425 11521425 C T THSD7A Silent p.A669A 0.33 TCGA-CG-4460-01 7 117351472 117351472 G A CTTNBP2 3'UTR 0.23 TCGA-CG-4460-01 7 119915126 119915126 G A KCND2 Missense_Mutation p.R147H 0.47 deleterious(0.02) probably_damaging(0.999) TCGA-CG-4460-01 7 121616899 121616899 C T PTPRZ1 Missense_Mutation p.R205C 0.21 deleterious(0) probably_damaging(0.98) TCGA-CG-4460-01 7 122809246 122809246 A G SLC13A1 Missense_Mutation p.M170T 0.32 tolerated(0.5) benign(0.023) TCGA-CG-4460-01 7 123516944 123516944 C T HYAL4 Missense_Mutation p.A394V 0.48 deleterious(0) benign(0.44) TCGA-CG-4460-01 7 124493078 124493078 G A POT1 Missense_Mutation p.R273W 0.28 deleterious(0) probably_damaging(0.999) TCGA-CG-4460-01 7 1275553 1275553 C T UNCX Missense_Mutation p.P179L 0.43 deleterious(0.02) benign(0.299) TCGA-CG-4460-01 7 128312406 128312406 C T FAM71F2 5'UTR 0.43 TCGA-CG-4460-01 7 128394342 128394342 A G CALU Intron 0.21 TCGA-CG-4460-01 7 128441373 128441373 C T CCDC136 Silent p.S160S 0.19 TCGA-CG-4460-01 7 128475589 128475589 G A FLNC Missense_Mutation p.G188S 0.46 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 7 128485030 128485030 G A FLNC Missense_Mutation p.G1171S 0.29 deleterious(0.04) possibly_damaging(0.61) TCGA-CG-4460-01 7 128498535 128498535 C T FLNC Silent p.D2712D 0.59 TCGA-CG-4460-01 7 130038610 130038610 T C CEP41 3'UTR 0.40 TCGA-CG-4460-01 7 131908289 131908289 G A PLXNA4 Silent p.P698P 0.54 TCGA-CG-4460-01 7 133749304 133749304 C T EXOC4 3'UTR 0.39 TCGA-CG-4460-01 7 135242666 135242666 G A NUP205 5'Flank 0.21 TCGA-CG-4460-01 7 135302378 135302378 T C NUP205 Missense_Mutation p.V1240A 0.44 deleterious(0.01) benign(0.217) TCGA-CG-4460-01 7 135406244 135406244 C T SLC13A4 Missense_Mutation p.V43M 0.38 deleterious(0) probably_damaging(0.991) TCGA-CG-4460-01 7 138235817 138235817 C T TRIM24 Missense_Mutation p.R385W 0.44 deleterious(0) possibly_damaging(0.834) TCGA-CG-4460-01 7 139258015 139258015 C T HIPK2 Silent p.P1085P 0.28 TCGA-CG-4460-01 7 140394679 140394679 C T ADCK2 3'UTR 0.21 TCGA-CG-4460-01 7 141385336 141385336 G T KIAA1147 Missense_Mutation p.L157I 0.25 tolerated(0.05) possibly_damaging(0.475) TCGA-CG-4460-01 7 142562074 142562074 C T EPHB6 Silent p.S172S 0.49 TCGA-CG-4460-01 7 142636732 142636732 C - C7orf34 Frame_Shift_Del p.Q32Sfs*17 0.26 TCGA-CG-4460-01 7 143090863 143090863 T C EPHA1 Missense_Mutation p.D866G 0.44 deleterious(0.04) benign(0.327) TCGA-CG-4460-01 7 1474758 1474758 G A MICALL2 Missense_Mutation p.R873W 0.35 deleterious(0) possibly_damaging(0.72) TCGA-CG-4460-01 7 147926752 147926752 C T CNTNAP2 Nonsense_Mutation p.R1088* 0.56 TCGA-CG-4460-01 7 148312508 148312508 C T C7orf33 3'UTR 0.22 TCGA-CG-4460-01 7 148801216 148801216 C T ZNF425 Missense_Mutation p.A583T 0.29 tolerated(0.41) benign(0.007) TCGA-CG-4460-01 7 150068868 150068868 G A REPIN1 Missense_Mutation p.G237S 0.36 tolerated(0.32) possibly_damaging(0.799) TCGA-CG-4460-01 7 150324881 150324881 G A GIMAP6 Silent p.L269L 0.18 TCGA-CG-4460-01 7 150698398 150698398 G - NOS3 Frame_Shift_Del p.G440Afs*64 0.31 TCGA-CG-4460-01 7 150737658 150737658 G T ABCB8 Missense_Mutation p.G442V 0.19 deleterious(0.03) possibly_damaging(0.535) TCGA-CG-4460-01 7 150815698 150815698 C T AGAP3 Silent p.I316I 0.17 TCGA-CG-4460-01 7 150932674 150932674 C T CHPF2 Silent p.G268G 0.15 TCGA-CG-4460-01 7 151164247 151164247 G A RHEB Silent p.D171D 0.35 TCGA-CG-4460-01 7 151880166 151880166 G A KMT2C Nonsense_Mutation p.Q1720* 0.41 TCGA-CG-4460-01 7 151896515 151896515 A T KMT2C Missense_Mutation p.D1374E 0.16 possibly_damaging(0.685) TCGA-CG-4460-01 7 151945174 151945174 G T KMT2C Missense_Mutation p.S782Y 0.04 possibly_damaging(0.883) TCGA-CG-4460-01 7 152346023 152346023 G A XRCC2 Missense_Mutation p.L183F 0.44 deleterious(0.05) probably_damaging(1) TCGA-CG-4460-01 7 1539535 1539535 G A INTS1 Silent p.P223P 0.22 TCGA-CG-4460-01 7 154677391 154677391 A G DPP6 Missense_Mutation p.N728D 0.30 tolerated(0.28) benign(0.198) TCGA-CG-4460-01 7 156754923 156754923 G A NOM1 Missense_Mutation p.V571M 0.50 deleterious(0.01) benign(0.327) TCGA-CG-4460-01 7 156798526 156798526 G A MNX1 Silent p.R298R 0.19 TCGA-CG-4460-01 7 157387999 157387999 G A PTPRN2 Silent p.H809H 0.47 TCGA-CG-4460-01 7 158109560 158109560 G A PTPRN2 Silent p.P76P 0.20 TCGA-CG-4460-01 7 158557481 158557481 C A ESYT2 Nonsense_Mutation p.G378* 0.14 TCGA-CG-4460-01 7 20371449 20371450 - T ITGB8 Frame_Shift_Ins p.T10Yfs*34 0.39 TCGA-CG-4460-01 7 20371470 20371470 T C ITGB8 Missense_Mutation p.V14A 0.13 tolerated_low_confidence(0.08) benign(0.001) TCGA-CG-4460-01 7 20793028 20793028 G A ABCB5 Missense_Mutation p.G1159S 0.38 deleterious(0.01) probably_damaging(1) TCGA-CG-4460-01 7 21641034 21641034 T G DNAH11 Missense_Mutation p.F1149C 0.31 probably_damaging(0.997) TCGA-CG-4460-01 7 21934560 21934560 C T DNAH11 Missense_Mutation p.T4338M 0.30 benign(0.003) TCGA-CG-4460-01 7 2472430 2472430 C T CHST12 Silent p.P52P 0.38 TCGA-CG-4460-01 7 27149773 27149773 G A HOXA3 Nonsense_Mutation p.R163* 0.31 TCGA-CG-4460-01 7 27181409 27181409 C T HOXA5 3'UTR 0.43 TCGA-CG-4460-01 7 30656804 30656804 T C GARS Silent p.S423S 0.19 TCGA-CG-4460-01 7 31102893 31102893 G A ADCYAP1R1 Missense_Mutation p.V5M 0.35 tolerated_low_confidence(0.13) benign(0.002) TCGA-CG-4460-01 7 32909214 32909214 G A KBTBD2 Nonsense_Mutation p.R539* 0.39 TCGA-CG-4460-01 7 34118650 34118650 G A BMPER Silent p.S420S 0.35 TCGA-CG-4460-01 7 36338783 36338783 C T EEPD1 Nonsense_Mutation p.R560* 0.30 TCGA-CG-4460-01 7 36671674 36671674 C T AOAH Silent p.P163P 0.17 TCGA-CG-4460-01 7 37264587 37264587 G A ELMO1 Missense_Mutation p.R200W 0.15 tolerated(0.19) probably_damaging(1) TCGA-CG-4460-01 7 37272712 37272712 C T ELMO1 Silent p.A179A 0.29 TCGA-CG-4460-01 7 38803065 38803065 C T VPS41 Missense_Mutation p.S471N 0.16 tolerated(0.37) benign(0.021) TCGA-CG-4460-01 7 38869900 38869900 A - VPS41 Frame_Shift_Del p.L92Wfs*46 0.21 TCGA-CG-4460-01 7 4169722 4169722 A G SDK1 Silent p.K1374K 0.21 TCGA-CG-4460-01 7 42005138 42005138 T G GLI3 Missense_Mutation p.K1178T 0.17 deleterious(0) possibly_damaging(0.848) TCGA-CG-4460-01 7 42085067 42085067 G A GLI3 Missense_Mutation p.R248C 0.41 deleterious(0) probably_damaging(0.999) TCGA-CG-4460-01 7 42950466 42950466 C T C7orf25 Missense_Mutation p.A70T 0.12 tolerated(0.38) benign(0.008) TCGA-CG-4460-01 7 43548835 43548835 G C HECW1 Intron 0.42 TCGA-CG-4460-01 7 43917744 43917744 G A URGCP Missense_Mutation p.R440W 0.42 deleterious(0) probably_damaging(0.986) TCGA-CG-4460-01 7 44098517 44098517 C T DBNL Missense_Mutation p.P266L 0.11 deleterious(0.01) possibly_damaging(0.888) TCGA-CG-4460-01 7 44150526 44150526 C T AEBP1 Silent p.N500N 0.38 TCGA-CG-4460-01 7 44185241 44185241 C T GCK Missense_Mutation p.A371T 0.23 deleterious(0) benign(0.247) TCGA-CG-4460-01 7 44556853 44556853 C T NPC1L1 Silent p.L1107L 0.21 TCGA-CG-4460-01 7 45005749 45005749 G A MYO1G Missense_Mutation p.R694C 0.36 deleterious(0) possibly_damaging(0.906) TCGA-CG-4460-01 7 45798706 45798706 G A SEPT7P2 RNA 0.19 TCGA-CG-4460-01 7 47463779 47463779 G A TNS3 Silent p.A131A 0.33 TCGA-CG-4460-01 7 47884594 47884594 T C PKD1L1 Missense_Mutation p.S1746G 0.17 tolerated(0.53) benign(0.016) TCGA-CG-4460-01 7 50097611 50097611 C T ZPBP Missense_Mutation p.R154H 0.47 tolerated(0.19) benign(0.007) TCGA-CG-4460-01 7 5391706 5391706 G A TNRC18 Silent p.D1738D 0.30 TCGA-CG-4460-01 7 55910750 55910750 C T SEPT14 Missense_Mutation p.R148H 0.27 deleterious(0.01) benign(0.303) TCGA-CG-4460-01 7 56022814 56022814 G A MRPS17 Silent p.S112S 0.37 TCGA-CG-4460-01 7 56088813 56088813 G A PSPH Silent p.I31I 0.19 TCGA-CG-4460-01 7 5754755 5754755 C T RNF216 Missense_Mutation p.A588T 0.32 tolerated(0.2) probably_damaging(0.909) TCGA-CG-4460-01 7 6063069 6063069 T C AIMP2 Missense_Mutation p.V237A 0.19 deleterious(0) probably_damaging(0.926) TCGA-CG-4460-01 7 6205191 6205191 C G CYTH3 Missense_Mutation p.E319D 0.40 tolerated(0.52) benign(0.001) TCGA-CG-4460-01 7 6210221 6210221 G A CYTH3 Silent p.N256N 0.39 TCGA-CG-4460-01 7 6449878 6449878 C T DAGLB Missense_Mutation p.R568H 0.41 tolerated(1) benign(0.001) TCGA-CG-4460-01 7 6476037 6476037 G A DAGLB Silent p.C125C 0.04 TCGA-CG-4460-01 7 70255651 70255651 A T AUTS2 Missense_Mutation p.D1150V 0.11 deleterious(0) possibly_damaging(0.766) TCGA-CG-4460-01 7 72718986 72718986 G A NSUN5 Silent p.Y203Y 0.15 TCGA-CG-4460-01 7 72744212 72744212 A G FKBP6 Missense_Mutation p.R109G 0.12 deleterious(0) probably_damaging(0.994) TCGA-CG-4460-01 7 73098161 73098161 C T WBSCR22 Intron 0.21 TCGA-CG-4460-01 7 75157077 75157077 C T PMS2P3 RNA 0.33 TCGA-CG-4460-01 7 75630223 75630223 G A STYXL1 Silent p.N265N 0.32 TCGA-CG-4460-01 7 83032029 83032029 G A SEMA3E Silent p.N354N 0.47 TCGA-CG-4460-01 7 87530094 87530094 C T DBF4 Silent p.G275G 0.54 TCGA-CG-4460-01 7 87808307 87808307 C T ADAM22 Silent p.S786S 0.28 TCGA-CG-4460-01 7 92731338 92731338 G A SAMD9 Missense_Mutation p.A1358V 0.49 tolerated(0.09) benign(0.007) TCGA-CG-4460-01 7 92762803 92762803 G A SAMD9L Nonsense_Mutation p.R828* 0.51 TCGA-CG-4460-01 7 92765100 92765100 C A SAMD9L Missense_Mutation p.W62L 0.45 tolerated(0.24) benign(0.002) TCGA-CG-4460-01 7 943769 943769 G A ADAP1 Silent p.D214D 0.28 TCGA-CG-4460-01 7 95822392 95822392 C T SLC25A13 Missense_Mutation p.R191H 0.41 deleterious(0.02) benign(0.097) TCGA-CG-4460-01 7 96651486 96651486 G A DLX5 Intron 0.06 TCGA-CG-4460-01 7 97862157 97862157 G A TECPR1 Silent p.Y600Y 0.36 TCGA-CG-4460-01 7 98491440 98491440 T C TRRAP Missense_Mutation p.V129A 0.18 benign(0.153) TCGA-CG-4460-01 7 98565270 98565270 G A TRRAP Silent p.S2480S 0.55 TCGA-CG-4460-01 7 99226926 99226926 C T ZSCAN25 Silent p.L306L 0.52 TCGA-CG-4460-01 7 99998595 99998595 G A ZCWPW1 3'UTR 0.33 TCGA-CG-4460-01 8 100790954 100790954 C T VPS13B Missense_Mutation p.P2517S 0.23 deleterious(0.01) possibly_damaging(0.641) TCGA-CG-4460-01 8 101206456 101206456 A - SPAG1 Frame_Shift_Del p.S354Afs*36 0.21 TCGA-CG-4460-01 8 101563192 101563192 G A ANKRD46 Intron 0.67 TCGA-CG-4460-01 8 101601120 101601120 G A SNX31 Nonsense_Mutation p.Q356* 0.23 TCGA-CG-4460-01 8 103289349 103289349 T - UBR5 Frame_Shift_Del p.E2121Kfs*28 0.13 TCGA-CG-4460-01 8 104312357 104312357 T C FZD6 Silent p.L8L 0.52 TCGA-CG-4460-01 8 10583396 10583396 C T SOX7 Missense_Mutation p.G392D 0.36 tolerated(0.41) probably_damaging(1) TCGA-CG-4460-01 8 109240554 109240557 AAAC - EIF3E Frame_Shift_Del p.V221Sfs*36 0.26 TCGA-CG-4460-01 8 110099797 110099797 T C TRHR Missense_Mutation p.V19A 0.28 tolerated(0.51) benign(0) TCGA-CG-4460-01 8 110348379 110348379 C T ENY2 Missense_Mutation p.A10V 0.44 tolerated(0.14) benign(0.01) TCGA-CG-4460-01 8 11400821 11400821 G A BLK Missense_Mutation p.A30T 0.32 tolerated(0.58) benign(0.001) TCGA-CG-4460-01 8 116599649 116599649 T C TRPS1 Missense_Mutation p.Y760C 0.45 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CG-4460-01 8 118170074 118170074 C T SLC30A8 Missense_Mutation p.A188V 0.09 tolerated(0.9) possibly_damaging(0.905) TCGA-CG-4460-01 8 120855846 120855846 T C DSCC1 Intron 0.18 TCGA-CG-4460-01 8 121262895 121262895 T C COL14A1 Missense_Mutation p.I881T 0.22 deleterious(0.01) benign(0.392) TCGA-CG-4460-01 8 121463542 121463542 G A MTBP Silent p.R135R 0.31 TCGA-CG-4460-01 8 121468864 121468864 A G MTBP Missense_Mutation p.D234G 0.17 deleterious(0) probably_damaging(0.95) TCGA-CG-4460-01 8 121514817 121514817 G A MTBP Silent p.L565L 0.32 TCGA-CG-4460-01 8 124346170 124346170 C G ATAD2 Missense_Mutation p.E1142D 0.15 tolerated(0.22) benign(0.003) TCGA-CG-4460-01 8 125110039 125110039 G A FER1L6 Missense_Mutation p.V1600M 0.15 deleterious(0) possibly_damaging(0.9) TCGA-CG-4460-01 8 132051764 132051764 G A ADCY8 Silent p.G272G 0.20 TCGA-CG-4460-01 8 133041402 133041402 G A OC90 Silent p.C352C 0.14 TCGA-CG-4460-01 8 133153429 133153429 C T KCNQ3 Missense_Mutation p.R471H 0.28 deleterious(0) probably_damaging(0.995) TCGA-CG-4460-01 8 13356670 13356670 T G DLC1 Missense_Mutation p.N304T 0.31 tolerated_low_confidence(0.12) possibly_damaging(0.66) TCGA-CG-4460-01 8 133826909 133826909 A - PHF20L1 Frame_Shift_Del p.N322Mfs*42 0.27 TCGA-CG-4460-01 8 141551427 141551427 G A AGO2 Missense_Mutation p.R624C 0.11 deleterious(0) probably_damaging(0.995) TCGA-CG-4460-01 8 141561430 141561430 G - AGO2 Frame_Shift_Del p.Q459Sfs*9 0.28 TCGA-CG-4460-01 8 142151514 142151514 G - DENND3 Intron 0.33 TCGA-CG-4460-01 8 142178431 142178431 G A DENND3 Silent p.A614A 0.33 TCGA-CG-4460-01 8 142432427 142432427 G A PTP4A3 Silent p.T29T 0.28 TCGA-CG-4460-01 8 143956469 143956469 G A CYP11B1 Silent p.S434S 0.26 TCGA-CG-4460-01 8 144332645 144332645 C T ZFP41 3'UTR 0.47 TCGA-CG-4460-01 8 144668426 144668426 G A EEF1D Missense_Mutation p.A417V 0.41 deleterious(0) possibly_damaging(0.556) TCGA-CG-4460-01 8 144945811 144945811 G A EPPK1 Silent p.S537S 0.27 TCGA-CG-4460-01 8 144994535 144994535 C T PLEC Missense_Mutation p.V3289M 0.48 probably_damaging(0.986) TCGA-CG-4460-01 8 145007371 145007371 T C PLEC Missense_Mutation p.Y608C 0.20 unknown(0) TCGA-CG-4460-01 8 145059213 145059213 A G PARP10 Silent p.I319I 0.30 TCGA-CG-4460-01 8 145095141 145095141 C - SPATC1 Frame_Shift_Del p.L183* 0.23 TCGA-CG-4460-01 8 145109979 145109979 G - OPLAH Frame_Shift_Del p.H788Tfs*31 0.28 TCGA-CG-4460-01 8 145114852 145114852 C - OPLAH Frame_Shift_Del p.H29Tfs*5 0.19 TCGA-CG-4460-01 8 145193655 145193655 T A FAM203A Silent p.I244I 0.34 TCGA-CG-4460-01 8 145267944 145267944 C T MROH1 Intron 0.45 TCGA-CG-4460-01 8 145535772 145535772 C T HSF1 Silent p.T328T 0.56 TCGA-CG-4460-01 8 145616191 145616191 C - ADCK5 Frame_Shift_Del p.E162Sfs*9 0.13 TCGA-CG-4460-01 8 145737619 145737619 C A RECQL4 Missense_Mutation p.K1048N 0.28 tolerated(0.13) benign(0.397) TCGA-CG-4460-01 8 15519671 15519671 G A TUSC3 Missense_Mutation p.V192I 0.15 tolerated(0.54) benign(0.059) TCGA-CG-4460-01 8 17601140 17601142 GAG - MTUS1 In_Frame_Del p.P753del 0.13 TCGA-CG-4460-01 8 1833852 1833852 C T ARHGEF10 Silent p.P387P 0.20 TCGA-CG-4460-01 8 18393319 18393319 C T PSD3 Silent p.K1026K 0.32 TCGA-CG-4460-01 8 1851509 1851509 A C ARHGEF10 Silent p.T571T 0.57 TCGA-CG-4460-01 8 1851558 1851558 G A ARHGEF10 Missense_Mutation p.D588N 0.04 deleterious(0) probably_damaging(0.999) TCGA-CG-4460-01 8 1853833 1853833 C T ARHGEF10 Nonsense_Mutation p.R640* 0.25 TCGA-CG-4460-01 8 19263216 19263217 TT - CSGALNACT1 3'UTR 0.43 TCGA-CG-4460-01 8 19362790 19362790 A C CSGALNACT1 Missense_Mutation p.S186A 0.15 tolerated(1) benign(0.004) TCGA-CG-4460-01 8 2005590 2005590 G A MYOM2 Missense_Mutation p.A130T 0.24 tolerated(0.19) benign(0.003) TCGA-CG-4460-01 8 20110932 20110932 C T LZTS1 Silent p.A170A 0.34 TCGA-CG-4460-01 8 21608314 21608314 G A GFRA2 Missense_Mutation p.R194C 0.38 tolerated(0.18) possibly_damaging(0.892) TCGA-CG-4460-01 8 21973889 21973889 T G HR Missense_Mutation p.E1144A 0.16 deleterious(0) probably_damaging(0.999) TCGA-CG-4460-01 8 23106785 23106785 G - CHMP7 Frame_Shift_Del p.V123Lfs*6 0.36 TCGA-CG-4460-01 8 23198655 23198655 C T LOXL2 Missense_Mutation p.R198H 0.40 tolerated(0.08) benign(0.26) TCGA-CG-4460-01 8 23290530 23290530 C T ENTPD4 Missense_Mutation p.R587H 0.40 deleterious(0.03) benign(0.036) TCGA-CG-4460-01 8 24256906 24256906 C T ADAMDEC1 Silent p.S310S 0.34 TCGA-CG-4460-01 8 25181376 25181376 C T DOCK5 Missense_Mutation p.S543L 0.35 deleterious(0) possibly_damaging(0.718) TCGA-CG-4460-01 8 26627853 26627853 C T ADRA1A Missense_Mutation p.R405H 0.38 tolerated_low_confidence(0.1) benign(0.002) TCGA-CG-4460-01 8 27098744 27098744 C T STMN4 Missense_Mutation p.D76N 0.40 deleterious(0.01) possibly_damaging(0.492) TCGA-CG-4460-01 8 2813159 2813159 T C CSMD1 Missense_Mutation p.T3316A 0.32 benign(0.017) TCGA-CG-4460-01 8 2820881 2820881 C G CSMD1 Missense_Mutation p.G3106A 0.45 probably_damaging(1) TCGA-CG-4460-01 8 28575713 28575713 G A EXTL3 Missense_Mutation p.V713I 0.23 deleterious(0.01) benign(0.21) TCGA-CG-4460-01 8 29963354 29963354 C T LEPROTL1 Intron 0.26 TCGA-CG-4460-01 8 3009015 3009015 T G CSMD1 Missense_Mutation p.S1979R 0.10 benign(0.009) TCGA-CG-4460-01 8 30436375 30436375 G A GTF2E2 3'UTR 0.37 TCGA-CG-4460-01 8 30701385 30701385 G A TEX15 Nonsense_Mutation p.R1717* 0.26 TCGA-CG-4460-01 8 33406951 33406951 C T RNF122 Silent p.P110P 0.29 TCGA-CG-4460-01 8 38156990 38156990 C T WHSC1L1 Silent p.S910S 0.24 TCGA-CG-4460-01 8 38272143 38272143 C T FGFR1 Missense_Mutation p.R692Q 0.35 deleterious(0.02) possibly_damaging(0.896) TCGA-CG-4460-01 8 39089551 39089551 A C ADAM32 Silent p.R511R 0.31 TCGA-CG-4460-01 8 42188621 42188621 G A IKBKB 3'UTR 0.30 TCGA-CG-4460-01 8 42294885 42294885 C T SLC20A2 Missense_Mutation p.R382Q 0.46 tolerated(0.05) probably_damaging(0.979) TCGA-CG-4460-01 8 42977375 42977375 G A POMK Silent p.T136T 0.38 TCGA-CG-4460-01 8 48352956 48352956 T C SPIDR Missense_Mutation p.C317R 0.23 deleterious(0) probably_damaging(0.999) TCGA-CG-4460-01 8 48696325 48696325 C T PRKDC Missense_Mutation p.R3717Q 0.24 benign(0.295) TCGA-CG-4460-01 8 48701555 48701555 T - PRKDC Frame_Shift_Del p.N3604Tfs*48 0.21 TCGA-CG-4460-01 8 48878898 48878898 C T MCM4 Silent p.C328C 0.24 TCGA-CG-4460-01 8 49832962 49832962 G A SNAI2 Missense_Mutation p.P40S 0.10 tolerated(0.15) benign(0.006) TCGA-CG-4460-01 8 54656163 54656163 G A ATP6V1H Silent p.A455A 0.53 TCGA-CG-4460-01 8 55370926 55370926 G A SOX17 Missense_Mutation p.M76I 0.25 deleterious(0) possibly_damaging(0.708) TCGA-CG-4460-01 8 57228626 57228626 G T SDR16C5 Missense_Mutation p.A94D 0.10 deleterious(0.03) probably_damaging(0.958) TCGA-CG-4460-01 8 57878873 57878873 G A IMPAD1 Missense_Mutation p.R229C 0.29 deleterious(0) probably_damaging(0.985) TCGA-CG-4460-01 8 59409213 59409213 C T CYP7A1 Silent p.S286S 0.25 TCGA-CG-4460-01 8 61757467 61757467 G A CHD7 Missense_Mutation p.R1632H 0.43 probably_damaging(0.994) TCGA-CG-4460-01 8 66516786 66516786 A G ARMC1 Missense_Mutation p.V231A 0.28 tolerated(0.21) benign(0.002) TCGA-CG-4460-01 8 67753312 67753312 T C SGK3 Silent p.S315S 0.13 TCGA-CG-4460-01 8 67969636 67969636 G A COPS5 Silent p.G184G 0.49 TCGA-CG-4460-01 8 68152512 68152512 G T ARFGEF1 Missense_Mutation p.P955H 0.27 deleterious(0) probably_damaging(0.996) TCGA-CG-4460-01 8 69351764 69351764 C T C8orf34 Missense_Mutation p.P120S 0.31 deleterious(0.03) probably_damaging(1) TCGA-CG-4460-01 8 70514026 70514026 T - SULF1 Frame_Shift_Del p.F343Lfs*7 0.39 TCGA-CG-4460-01 8 70744209 70744209 C T SLCO5A1 Missense_Mutation p.D234N 0.12 deleterious(0.03) benign(0.146) TCGA-CG-4460-01 8 71037039 71037039 C T NCOA2 Missense_Mutation p.M1326I 0.12 tolerated(0.14) benign(0.003) TCGA-CG-4460-01 8 71068415 71068415 T C NCOA2 Missense_Mutation p.T729A 0.28 tolerated(0.37) benign(0.015) TCGA-CG-4460-01 8 72755775 72755775 C T RP11-383H13.1 Missense_Mutation p.H47Y 0.28 unknown(0) TCGA-CG-4460-01 8 73958474 73958474 G A TERF1 3'UTR 0.14 TCGA-CG-4460-01 8 75157302 75157302 T - JPH1 Frame_Shift_Del p.Y456Ffs*28 0.29 TCGA-CG-4460-01 8 77896154 77896155 - T PEX2 Frame_Shift_Ins p.N87Kfs*2 0.33 TCGA-CG-4460-01 8 81897572 81897572 G A PAG1 Silent p.Y105Y 0.18 TCGA-CG-4460-01 8 86044119 86044119 G A LRRCC1 Missense_Mutation p.V631M 0.33 tolerated(0.36) benign(0.007) TCGA-CG-4460-01 8 90937477 90937477 T C OSGIN2 Missense_Mutation p.L456S 0.44 deleterious(0) probably_damaging(0.998) TCGA-CG-4460-01 8 91072926 91072926 G A CALB1 Silent p.D201D 0.29 TCGA-CG-4460-01 8 92998374 92998374 G C RUNX1T1 Silent p.V430V 0.15 TCGA-CG-4460-01 8 94746632 94746632 C T RBM12B Silent p.R669R 0.28 TCGA-CG-4460-01 8 94798500 94798500 T G TMEM67 Missense_Mutation p.D446E 0.16 tolerated(0.06) probably_damaging(0.997) TCGA-CG-4460-01 8 95384343 95384343 A C RAD54B 3'UTR 0.39 TCGA-CG-4460-01 8 99168279 99168279 C T POP1 Missense_Mutation p.R687C 0.21 deleterious(0) probably_damaging(0.982) TCGA-CG-4460-01 9 100328204 100328204 C T TMOD1 Silent p.I231I 0.43 TCGA-CG-4460-01 9 100437715 100437715 A - XPA 3'UTR 0.32 TCGA-CG-4460-01 9 100667176 100667176 G A C9orf156 Missense_Mutation p.R389W 0.45 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 9 101065539 101065539 C T GABBR2 Missense_Mutation p.R799Q 0.52 tolerated(0.09) benign(0.429) TCGA-CG-4460-01 9 103340768 103340768 A - MURC Frame_Shift_Del p.V117Lfs*8 0.30 TCGA-CG-4460-01 9 107528697 107528697 C T NIPSNAP3B Missense_Mutation p.A51V 0.45 deleterious(0.03) benign(0.009) TCGA-CG-4460-01 9 108126837 108126837 C T SLC44A1 Silent p.G363G 0.19 TCGA-CG-4460-01 9 110250404 110250404 G T KLF4 Missense_Mutation p.L91I 0.19 tolerated(0.09) probably_damaging(0.953) TCGA-CG-4460-01 9 111782691 111782691 C T TMEM245 3'UTR 0.30 TCGA-CG-4460-01 9 112200417 112200417 G A PTPN3 Silent p.V188V 0.19 TCGA-CG-4460-01 9 113562945 113562945 G A MUSK Missense_Mutation p.A763T 0.27 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 9 116041300 116041300 G A PRPF4 Missense_Mutation p.R95Q 0.45 deleterious(0.04) benign(0.352) TCGA-CG-4460-01 9 116346603 116346603 G T RGS3 Missense_Mutation p.A971S 0.23 tolerated(0.51) benign(0.016) TCGA-CG-4460-01 9 117093866 117093866 T C ORM2 Silent p.V116V 0.07 TCGA-CG-4460-01 9 117188531 117188531 C T DFNB31 Missense_Mutation p.A376T 0.21 tolerated(0.18) benign(0.021) TCGA-CG-4460-01 9 121971060 121971060 C T BRINP1 Missense_Mutation p.R361H 0.22 tolerated(0.24) probably_damaging(0.964) TCGA-CG-4460-01 9 123922460 123922460 G A CNTRL Missense_Mutation p.G1657R 0.45 benign(0.168) TCGA-CG-4460-01 9 125377645 125377645 C T OR1Q1 Missense_Mutation p.A210V 0.19 deleterious(0.02) probably_damaging(0.998) TCGA-CG-4460-01 9 125391435 125391435 G A OR1B1 Missense_Mutation p.A127V 0.30 deleterious(0) probably_damaging(0.996) TCGA-CG-4460-01 9 126132598 126132598 C T CRB2 Silent p.Y422Y 0.60 TCGA-CG-4460-01 9 126144339 126144339 C T DENND1A Missense_Mutation p.R801H 0.58 tolerated_low_confidence(0.22) benign(0) TCGA-CG-4460-01 9 126145997 126145997 C A DENND1A Missense_Mutation p.K591N 0.23 deleterious(0) possibly_damaging(0.58) TCGA-CG-4460-01 9 127637424 127637424 C T ARPC5L Silent p.H131H 0.47 TCGA-CG-4460-01 9 128728156 128728158 CTC - PBX3 In_Frame_Del p.P421del 0.49 TCGA-CG-4460-01 9 129870758 129870758 G A ANGPTL2 Missense_Mutation p.H85Y 0.27 tolerated(0.22) benign(0.001) TCGA-CG-4460-01 9 130155448 130155448 C T GARNL3 Missense_Mutation p.A986V 0.45 tolerated_low_confidence(0.29) benign(0.001) TCGA-CG-4460-01 9 130167094 130167094 C T SLC2A8 Intron 0.06 TCGA-CG-4460-01 9 130270248 130270248 G A FAM129B Missense_Mutation p.R518W 0.48 deleterious(0) probably_damaging(0.985) TCGA-CG-4460-01 9 130438095 130438095 G A STXBP1 Missense_Mutation p.G375S 0.29 deleterious(0.02) possibly_damaging(0.508) TCGA-CG-4460-01 9 130495447 130495447 G A TOR2A Intron 0.48 TCGA-CG-4460-01 9 131022430 131022430 C T GOLGA2 Silent p.S572S 0.51 TCGA-CG-4460-01 9 131022431 131022431 G A GOLGA2 Missense_Mutation p.S572L 0.19 tolerated(0.17) possibly_damaging(0.903) TCGA-CG-4460-01 9 13113979 13113980 AG - MPDZ Frame_Shift_Del p.S1807Wfs*6 0.60 TCGA-CG-4460-01 9 131286073 131286073 G A GLE1 Missense_Mutation p.R282Q 0.42 tolerated(0.06) probably_damaging(0.935) TCGA-CG-4460-01 9 131456206 131456207 - AGAAGA SET In_Frame_Ins p.E246_E247dup 0.36 TCGA-CG-4460-01 9 132632775 132632775 G A USP20 Missense_Mutation p.V537I 0.49 tolerated(0.18) benign(0.078) TCGA-CG-4460-01 9 133799256 133799256 G - FIBCD1 Frame_Shift_Del p.R242Efs*8 0.47 TCGA-CG-4460-01 9 133936593 133936594 - C LAMC3 Frame_Shift_Ins p.Q781Pfs*7 0.21 TCGA-CG-4460-01 9 135781361 135781361 G T TSC1 Missense_Mutation p.P535H 0.45 tolerated(0.11) possibly_damaging(0.759) TCGA-CG-4460-01 9 136199028 136199028 C T SURF6 Missense_Mutation p.G255S 0.26 tolerated(0.14) benign(0.34) TCGA-CG-4460-01 9 136216547 136216547 G A RPL7A Missense_Mutation p.R89H 0.13 tolerated(0.21) benign(0.001) TCGA-CG-4460-01 9 138376815 138376815 C T PPP1R26 Silent p.G153G 0.56 TCGA-CG-4460-01 9 139264209 139264209 C T CARD9 Missense_Mutation p.R357Q 0.24 deleterious(0) probably_damaging(0.999) TCGA-CG-4460-01 9 139273404 139273404 C T SNAPC4 Missense_Mutation p.A959T 0.19 tolerated(0.64) benign(0.007) TCGA-CG-4460-01 9 139317762 139317762 C T PMPCA 3'UTR 0.20 TCGA-CG-4460-01 9 139370120 139370120 C T SEC16A Missense_Mutation p.A650T 0.48 tolerated(0.22) benign(0.024) TCGA-CG-4460-01 9 139395257 139395257 C T NOTCH1 Missense_Mutation p.G1894D 0.47 deleterious(0) probably_damaging(0.976) TCGA-CG-4460-01 9 139911183 139911183 G A ABCA2 Silent p.Y922Y 0.59 TCGA-CG-4460-01 9 140108310 140108310 C T NDOR1 Silent p.G130G 0.26 TCGA-CG-4460-01 9 140173575 140173575 C T TOR4A Missense_Mutation p.A145V 0.60 tolerated(1) benign(0.102) TCGA-CG-4460-01 9 14720258 14720258 C T CER1 Missense_Mutation p.A212T 0.34 tolerated(1) benign(0.064) TCGA-CG-4460-01 9 19305410 19305410 G A DENND4C Missense_Mutation p.A458T 0.18 tolerated(0.16) benign(0.004) TCGA-CG-4460-01 9 21206429 21206429 G A IFNA10 3'UTR 0.33 TCGA-CG-4460-01 9 2718724 2718724 C T KCNV2 Missense_Mutation p.R329C 0.37 tolerated(0.11) benign(0.056) TCGA-CG-4460-01 9 27949442 27949443 - T LINGO2 Frame_Shift_Ins p.P410Tfs*5 0.31 TCGA-CG-4460-01 9 32485255 32485255 C T DDX58 Silent p.R466R 0.41 TCGA-CG-4460-01 9 32543961 32543961 G A TOPORS Nonsense_Mutation p.R188* 0.34 TCGA-CG-4460-01 9 3257078 3257078 A G RFX3 Missense_Mutation p.V576A 0.22 deleterious(0) possibly_damaging(0.869) TCGA-CG-4460-01 9 33319097 33319097 C T NFX1 Silent p.C626C 0.39 TCGA-CG-4460-01 9 34660810 34660810 A C IL11RA Intron 0.35 TCGA-CG-4460-01 9 34972451 34972451 G T KIAA1045 Missense_Mutation p.G163C 0.05 deleterious(0) probably_damaging(1) TCGA-CG-4460-01 9 35091693 35091693 G - PIGO Frame_Shift_Del p.R731Vfs*17 0.21 TCGA-CG-4460-01 9 35555990 35555990 A G RUSC2 Missense_Mutation p.R900G 0.13 deleterious(0.03) probably_damaging(0.989) TCGA-CG-4460-01 9 35722156 35722156 C T TLN1 Missense_Mutation p.R303H 0.35 deleterious(0) benign(0.28) TCGA-CG-4460-01 9 35724274 35724274 G A TLN1 Missense_Mutation p.T190M 0.35 tolerated(0.09) benign(0.108) TCGA-CG-4460-01 9 35741827 35741827 G A GBA2 Missense_Mutation p.R210C 0.40 deleterious(0) benign(0.032) TCGA-CG-4460-01 9 35809174 35809174 C A NPR2 Missense_Mutation p.S1003Y 0.20 deleterious(0.01) possibly_damaging(0.889) TCGA-CG-4460-01 9 36109988 36109988 C T RECK Silent p.V600V 0.34 TCGA-CG-4460-01 9 36112461 36112461 A - RECK Frame_Shift_Del p.N685Tfs*12 0.31 TCGA-CG-4460-01 9 36229084 36229084 C T GNE Missense_Mutation p.R366Q 0.36 tolerated(0.1) possibly_damaging(0.807) TCGA-CG-4460-01 9 38397269 38397269 C T ALDH1B1 Silent p.V508V 0.35 TCGA-CG-4460-01 9 3879545 3879545 C - GLIS3 Frame_Shift_Del p.A727Pfs*79 0.30 TCGA-CG-4460-01 9 39176070 39176070 G A CNTNAP3 Missense_Mutation p.P316L 0.30 tolerated(0.14) benign(0.064) TCGA-CG-4460-01 9 39177488 39177488 G T CNTNAP3 Missense_Mutation p.L252M 0.09 tolerated(0.14) benign(0.213) TCGA-CG-4460-01 9 42368576 42368576 G A ANKRD20A2 Silent p.A54A 0.11 TCGA-CG-4460-01 9 6012690 6012690 T - RANBP6 Frame_Shift_Del p.N973Mfs*12 0.39 TCGA-CG-4460-01 9 6506085 6506085 G A UHRF2 Missense_Mutation p.R772Q 0.35 deleterious(0) probably_damaging(0.986) TCGA-CG-4460-01 9 71509429 71509432 AAAG - PIP5K1B Frame_Shift_Del p.K216Rfs*12 0.20 TCGA-CG-4460-01 9 73167808 73167808 G A TRPM3 Nonsense_Mutation p.R1164* 0.44 TCGA-CG-4460-01 9 75420336 75420336 C A TMC1 Silent p.T535T 0.23 TCGA-CG-4460-01 9 75774283 75774283 C T ANXA1 Nonsense_Mutation p.R72* 0.40 TCGA-CG-4460-01 9 79634612 79634612 G A FOXB2 Silent p.P14P 0.55 TCGA-CG-4460-01 9 80262590 80262590 C A GNA14 Silent p.L40L 0.28 TCGA-CG-4460-01 9 84199147 84199148 - C TLE1 Frame_Shift_Ins p.D760Gfs*8 0.37 TCGA-CG-4460-01 9 85862602 85862602 A G FRMD3 3'UTR 0.64 TCGA-CG-4460-01 9 86452186 86452186 G - KIF27 Frame_Shift_Del p.S1313Vfs*5 0.47 TCGA-CG-4460-01 9 86482715 86482715 G A KIF27 Nonsense_Mutation p.Q940* 0.17 TCGA-CG-4460-01 9 86506375 86506375 C A KIF27 Silent p.L548L 0.23 TCGA-CG-4460-01 9 90588857 90588857 C A CDK20 Nonsense_Mutation p.E57* 0.40 TCGA-CG-4460-01 9 95063861 95063861 A - NOL8 Frame_Shift_Del p.F1049Lfs*8 0.22 TCGA-CG-4460-01 9 95481196 95481196 C T BICD2 Silent p.A577A 0.67 TCGA-CG-4460-01 9 96428119 96428119 A - PHF2 Frame_Shift_Del p.N698Tfs*149 0.26 TCGA-CG-4460-01 9 98238356 98238356 G A PTCH1 Missense_Mutation p.A563V 0.39 deleterious(0.04) benign(0.229) TCGA-CG-4460-01 9 98691044 98691044 A G ERCC6L2 Missense_Mutation p.D561G 0.47 deleterious(0.02) possibly_damaging(0.673) TCGA-CG-4460-01 X 100486614 100486614 C - DRP2 5'UTR 0.30 TCGA-CG-4460-01 X 100871578 100871578 C T ARMCX6 Silent p.A11A 0.49 TCGA-CG-4460-01 X 108904809 108904809 C T ACSL4 Missense_Mutation p.A591T 0.62 tolerated(0.29) possibly_damaging(0.864) TCGA-CG-4460-01 X 110497632 110497632 C T CAPN6 Splice_Site p.X56_splice 0.27 TCGA-CG-4460-01 X 118222370 118222370 G A KIAA1210 Silent p.S941S 0.52 TCGA-CG-4460-01 X 118222628 118222628 A G KIAA1210 Silent p.S855S 0.45 TCGA-CG-4460-01 X 118715482 118715482 T C UBE2A Missense_Mutation p.L55P 0.62 deleterious(0) probably_damaging(0.997) TCGA-CG-4460-01 X 119243191 119243191 G A RHOXF1 Missense_Mutation p.R172C 0.71 deleterious(0.05) benign(0.001) TCGA-CG-4460-01 X 119680456 119680456 G A CUL4B Silent p.S282S 0.74 TCGA-CG-4460-01 X 12708311 12708311 A G FRMPD4 Intron 0.45 TCGA-CG-4460-01 X 129190011 129190011 C - BCORL1 Frame_Shift_Del p.P1681Qfs*20 0.55 TCGA-CG-4460-01 X 129518542 129518542 C A GPR119 Missense_Mutation p.A294S 0.65 tolerated(0.18) benign(0.031) TCGA-CG-4460-01 X 131214290 131214290 G A FRMD7 Nonsense_Mutation p.R304* 0.55 TCGA-CG-4460-01 X 135080645 135080646 - T SLC9A6 Frame_Shift_Ins p.R206Sfs*58 0.54 TCGA-CG-4460-01 X 135288662 135288662 G A FHL1 Missense_Mutation p.G24D 0.29 tolerated(1) benign(0.05) TCGA-CG-4460-01 X 135750258 135750258 C T ARHGEF6 Missense_Mutation p.R754Q 0.64 deleterious(0) possibly_damaging(0.643) TCGA-CG-4460-01 X 13801529 13801529 G A GPM6B Silent p.H160H 0.39 TCGA-CG-4460-01 X 141290587 141290587 G A MAGEC2 3'UTR 0.62 TCGA-CG-4460-01 X 142795351 142795351 T C SPANXN2 Silent p.S109S 0.37 TCGA-CG-4460-01 X 144905393 144905393 C T SLITRK2 Missense_Mutation p.R484W 0.56 deleterious(0) probably_damaging(0.918) TCGA-CG-4460-01 X 150348665 150348665 G A GPR50 Missense_Mutation p.V204M 0.65 deleterious(0.01) possibly_damaging(0.593) TCGA-CG-4460-01 X 150842424 150842425 - C PASD1 Frame_Shift_Ins p.V650Rfs*13 0.28 TCGA-CG-4460-01 X 151283518 151283518 G A RP11-1007I13.4 RNA 0.59 TCGA-CG-4460-01 X 151336738 151336738 G A GABRA3 Missense_Mutation p.R481W 0.63 deleterious(0) probably_damaging(0.995) TCGA-CG-4460-01 X 152137958 152137958 G A ZNF185 Missense_Mutation p.R666H 0.59 tolerated(0.08) benign(0.063) TCGA-CG-4460-01 X 153225598 153225598 G T HCFC1 Missense_Mutation p.P367T 0.39 deleterious(0) probably_damaging(0.994) TCGA-CG-4460-01 X 153551557 153551557 C T TKTL1 Silent p.D397D 0.60 TCGA-CG-4460-01 X 153577205 153577205 C T FLNA 3'UTR 0.57 TCGA-CG-4460-01 X 154158281 154158281 C T F8 Missense_Mutation p.A1262T 0.25 tolerated(1) benign(0.001) TCGA-CG-4460-01 X 17818801 17818801 C T RAI2 Missense_Mutation p.E444K 0.43 tolerated(1) unknown(0) TCGA-CG-4460-01 X 24833131 24833131 G A POLA1 Missense_Mutation p.R1105Q 0.50 tolerated(0.08) probably_damaging(0.941) TCGA-CG-4460-01 X 2609862 2609862 G T CD99 Intron 0.45 TCGA-CG-4460-01 X 2867386 2867386 C T ARSE Silent p.T271T 0.38 TCGA-CG-4460-01 X 34961351 34961351 C A FAM47B Missense_Mutation p.P135T 0.44 tolerated(0.06) benign(0.367) TCGA-CG-4460-01 X 35969308 35969308 G A CXorf22 Silent p.Q239Q 0.44 TCGA-CG-4460-01 X 46466404 46466404 G - SLC9A7 Frame_Shift_Del p.L721Wfs*28 0.42 TCGA-CG-4460-01 X 47040964 47040964 C T RBM10 Silent p.R498R 0.71 TCGA-CG-4460-01 X 48547071 48547071 G A WAS Silent p.P318P 0.41 TCGA-CG-4460-01 X 54578159 54578159 G A GNL3L Missense_Mutation p.R341H 0.50 tolerated(0.1) benign(0.01) TCGA-CG-4460-01 X 63411093 63411093 C T AMER1 Missense_Mutation p.E692K 0.22 tolerated(0.27) benign(0.009) TCGA-CG-4460-01 X 64140025 64140025 G A ZC4H2 Missense_Mutation p.R112C 0.56 deleterious(0) possibly_damaging(0.88) TCGA-CG-4460-01 X 69243069 69243069 C T EDA Silent p.G168G 0.39 TCGA-CG-4460-01 X 69282415 69282415 G A OTUD6A Missense_Mutation p.R14H 0.65 deleterious(0) probably_damaging(0.991) TCGA-CG-4460-01 X 70145544 70145544 C T SLC7A3 3'UTR 0.56 TCGA-CG-4460-01 X 70360635 70360635 G A MED12 Silent p.Q2065Q 0.22 TCGA-CG-4460-01 X 70460933 70460933 C T ZMYM3 Missense_Mutation p.D1316N 0.24 deleterious(0.04) probably_damaging(0.921) TCGA-CG-4460-01 X 72433309 72433309 A T NAP1L2 Missense_Mutation p.N340K 0.62 deleterious(0) possibly_damaging(0.451) TCGA-CG-4460-01 X 8766403 8766403 G A FAM9A Missense_Mutation p.T113M 0.45 tolerated_low_confidence(0.28) benign(0.01) TCGA-CG-4460-01 X 92964569 92964569 A - FAM133A Frame_Shift_Del p.T53Qfs*6 0.40 TCGA-CG-4462-01 10 26457674 26457674 A C MYO3A Missense_Mutation p.N1049H 0.16 deleterious(0) possibly_damaging(0.848) TCGA-CG-4462-01 11 119005167 119005167 C T HINFP Missense_Mutation p.L505F 0.08 tolerated(0.05) possibly_damaging(0.883) TCGA-CG-4462-01 11 2424885 2424885 C A TSSC4 3'UTR 0.14 TCGA-CG-4462-01 11 33667477 33667477 G A KIAA1549L Silent p.S1588S 0.10 TCGA-CG-4462-01 11 61729952 61729952 C G BEST1 Missense_Mutation p.N382K 0.05 deleterious(0.05) benign(0.009) TCGA-CG-4462-01 11 86123466 86123466 C T CCDC81 Missense_Mutation p.A419V 0.10 tolerated(0.16) benign(0.041) TCGA-CG-4462-01 12 114841689 114841689 G A TBX5 Silent p.D5D 0.09 TCGA-CG-4462-01 12 4662198 4662198 C T RAD51AP1 Silent p.D219D 0.09 TCGA-CG-4462-01 12 49993507 49993507 C T FAM186B Missense_Mutation p.G639E 0.09 deleterious(0.05) probably_damaging(0.999) TCGA-CG-4462-01 12 6637448 6637448 C T NCAPD2 Missense_Mutation p.R1085C 0.11 deleterious(0.01) possibly_damaging(0.825) TCGA-CG-4462-01 12 9344831 9344831 C T PZP Missense_Mutation p.V502I 0.10 tolerated(0.46) benign(0.001) TCGA-CG-4462-01 13 46090314 46090314 C T COG3 Missense_Mutation p.L616F 0.08 deleterious(0) probably_damaging(0.918) TCGA-CG-4462-01 13 88328449 88328449 G A SLITRK5 Missense_Mutation p.R269H 0.08 tolerated(0.49) benign(0.275) TCGA-CG-4462-01 14 100377910 100377910 G T EML1 Silent p.T516T 0.08 TCGA-CG-4462-01 14 101500139 101500139 C T MIR495 RNA 0.11 TCGA-CG-4462-01 14 102906877 102906877 G C TECPR2 Missense_Mutation p.V895L 0.08 tolerated(0.17) benign(0.027) TCGA-CG-4462-01 14 104212794 104212794 C T PPP1R13B Missense_Mutation p.G356R 0.05 deleterious(0.01) benign(0.008) TCGA-CG-4462-01 14 76147917 76147917 C T TTLL5 Nonsense_Mutation p.R71* 0.05 TCGA-CG-4462-01 14 81209494 81209494 A G CEP128 Missense_Mutation p.S911P 0.10 deleterious(0.01) possibly_damaging(0.636) TCGA-CG-4462-01 15 68118709 68118709 C T SKOR1 Silent p.F367F 0.08 TCGA-CG-4462-01 15 82532780 82532780 G C EFTUD1 Missense_Mutation p.H165Q 0.16 tolerated(0.13) benign(0.178) TCGA-CG-4462-01 16 67264254 67264254 C T FHOD1 Missense_Mutation p.R1005H 0.11 deleterious(0) probably_damaging(0.999) TCGA-CG-4462-01 16 71715755 71715755 C G PHLPP2 Missense_Mutation p.E263D 0.08 tolerated(0.41) benign(0.4) TCGA-CG-4462-01 16 76389294 76389294 C A CNTNAP4 Silent p.T67T 0.18 TCGA-CG-4462-01 17 43580853 43580854 AA - LRRC37A4P 3'Flank 0.09 TCGA-CG-4462-01 18 45368211 45368211 G C SMAD2 Nonsense_Mutation p.S464* 0.11 TCGA-CG-4462-01 18 76755232 76755232 C T SALL3 Missense_Mutation p.P1081S 0.12 tolerated(0.08) benign(0.028) TCGA-CG-4462-01 19 10401793 10401793 C T ICAM5 Missense_Mutation p.A43V 0.09 tolerated(0.1) benign(0.348) TCGA-CG-4462-01 19 14693908 14693908 C T CLEC17A 5'Flank 0.19 TCGA-CG-4462-01 19 19656264 19656264 C T CILP2 Silent p.Y970Y 0.09 TCGA-CG-4462-01 19 52001483 52001483 G T SIGLEC12 Missense_Mutation p.H398Q 0.09 tolerated(0.15) possibly_damaging(0.727) TCGA-CG-4462-01 1 110028719 110028719 G A ATXN7L2 Silent p.L56L 0.12 TCGA-CG-4462-01 1 158589036 158589036 A G SPTA1 Missense_Mutation p.F2169S 0.09 deleterious(0) probably_damaging(0.999) TCGA-CG-4462-01 1 190195436 190195436 A C BRINP3 Missense_Mutation p.L246R 0.08 deleterious(0.03) benign(0.347) TCGA-CG-4462-01 1 201982390 201982391 - A ELF3 Nonsense_Mutation p.Y257* 0.11 TCGA-CG-4462-01 1 22141037 22141037 C T LDLRAD2 Missense_Mutation p.R78C 0.06 deleterious(0.01) probably_damaging(0.926) TCGA-CG-4462-01 1 236881196 236881196 C T ACTN2 Silent p.A55A 0.10 TCGA-CG-4462-01 1 33612785 33612785 C T TRIM62 Missense_Mutation p.R474H 0.09 deleterious(0) probably_damaging(0.997) TCGA-CG-4462-01 1 34312507 34312507 G A CSMD2 Silent p.R297R 0.09 TCGA-CG-4462-01 1 45226090 45226090 T C KIF2C Silent p.T502T 0.05 TCGA-CG-4462-01 1 6530360 6530360 G A PLEKHG5 Missense_Mutation p.P658L 0.16 deleterious(0.01) benign(0.004) TCGA-CG-4462-01 1 75614308 75614308 G C LHX8 Missense_Mutation p.D251H 0.03 deleterious(0) probably_damaging(1) TCGA-CG-4462-01 20 2591146 2591146 C T TMC2 Missense_Mutation p.R499C 0.07 deleterious(0) probably_damaging(0.995) TCGA-CG-4462-01 21 11038841 11038841 G A BAGE2 RNA 0.03 TCGA-CG-4462-01 21 37416162 37416162 G A SETD4 Silent p.G273G 0.11 TCGA-CG-4462-01 22 30951395 30951395 C T GAL3ST1 Missense_Mutation p.V273M 0.11 deleterious(0.03) benign(0.305) TCGA-CG-4462-01 2 128399649 128399649 G A LIMS2 Missense_Mutation p.A236V 0.11 deleterious(0) possibly_damaging(0.852) TCGA-CG-4462-01 2 128409297 128409297 G A GPR17 Missense_Mutation p.E358K 0.09 deleterious_low_confidence(0.01) benign(0.439) TCGA-CG-4462-01 2 140990851 140990851 A G LRP1B Silent p.D4568D 0.06 TCGA-CG-4462-01 2 193059095 193059095 G A TMEFF2 Silent p.T52T 0.11 TCGA-CG-4462-01 2 29416141 29416141 G A ALK Silent p.Y1604Y 0.12 TCGA-CG-4462-01 2 46739557 46739557 C T ATP6V1E2 Silent p.A98A 0.08 TCGA-CG-4462-01 2 80874849 80874849 C T CTNNA2 Missense_Mutation p.S857F 0.05 tolerated(0.08) possibly_damaging(0.476) TCGA-CG-4462-01 2 85581480 85581480 T A RETSAT Missense_Mutation p.R51W 0.09 deleterious(0) probably_damaging(0.991) TCGA-CG-4462-01 2 89513368 89513368 G T IGKV1-27 Silent p.V5V 0.06 TCGA-CG-4462-01 3 121341997 121341997 C A FBXO40 Missense_Mutation p.T574N 0.11 deleterious(0) benign(0.197) TCGA-CG-4462-01 3 12858905 12858905 G A CAND2 Missense_Mutation p.R825H 0.12 tolerated(0.07) possibly_damaging(0.75) TCGA-CG-4462-01 3 382574 382574 T G CHL1 Silent p.P161P 0.08 TCGA-CG-4462-01 3 41275627 41275627 C G CTNNB1 Intron 0.12 TCGA-CG-4462-01 3 45052854 45052854 G A EXOSC7 3'UTR 0.09 TCGA-CG-4462-01 3 62240857 62240859 TAA - PTPRG In_Frame_Del p.N844del 0.13 TCGA-CG-4462-01 4 104640440 104640440 G A TACR3 Silent p.D131D 0.10 TCGA-CG-4462-01 4 155471521 155471521 G T PLRG1 5'UTR 0.08 TCGA-CG-4462-01 4 23815806 23815806 G A PPARGC1A Silent p.L434L 0.08 TCGA-CG-4462-01 4 39449979 39449979 G T KLB Missense_Mutation p.E936D 0.14 tolerated(1) benign(0.086) TCGA-CG-4462-01 5 149227185 149227185 G A PPARGC1B 3'UTR 0.10 TCGA-CG-4462-01 5 159776723 159776723 G A C1QTNF2 Missense_Mutation p.R149W 0.07 deleterious(0.01) unknown(0) TCGA-CG-4462-01 5 169697919 169697919 T G LCP2 Missense_Mutation p.E109D 0.08 tolerated(0.41) benign(0.009) TCGA-CG-4462-01 5 37052624 37052624 C T NIPBL Nonsense_Mutation p.R2407* 0.11 TCGA-CG-4462-01 5 89948224 89948224 G T GPR98 Missense_Mutation p.D1160Y 0.10 benign(0.088) TCGA-CG-4462-01 6 102247636 102247636 C T GRIK2 Silent p.F355F 0.09 TCGA-CG-4462-01 6 134350402 134350402 G A SLC2A12 Silent p.Y187Y 0.10 TCGA-CG-4462-01 6 152774695 152774695 G A SYNE1 Intron 0.09 TCGA-CG-4462-01 6 27879292 27879292 T C OR2B2 Missense_Mutation p.D269G 0.09 deleterious(0.03) possibly_damaging(0.869) TCGA-CG-4462-01 6 31079710 31079710 C T C6orf15 Silent p.A142A 0.13 TCGA-CG-4462-01 6 76412460 76412460 T C SENP6 Silent p.C796C 0.18 TCGA-CG-4462-01 7 131831381 131831381 C G PLXNA4 Missense_Mutation p.G1648A 0.04 deleterious(0) probably_damaging(1) TCGA-CG-4462-01 7 133933822 133933822 A G LRGUK Missense_Mutation p.E731G 0.10 tolerated(0.16) benign(0.006) TCGA-CG-4462-01 7 139726076 139726076 G A PARP12 Silent p.S567S 0.07 TCGA-CG-4462-01 7 142326989 142326989 C G TRBV19 Missense_Mutation p.T96S 0.05 deleterious(0.04) benign(0.031) TCGA-CG-4462-01 7 37889997 37889997 A C NME8 Missense_Mutation p.Q17H 0.08 deleterious(0) probably_damaging(0.998) TCGA-CG-4462-01 7 81600061 81600061 A T CACNA2D1 Intron 0.12 TCGA-CG-4462-01 7 88389278 88389278 C T ZNF804B 5'UTR 0.11 TCGA-CG-4462-01 7 99757813 99757813 C T GAL3ST4 Missense_Mutation p.R400Q 0.11 tolerated(0.08) probably_damaging(1) TCGA-CG-4462-01 8 104898339 104898339 C T RIMS2 Silent p.G504G 0.13 TCGA-CG-4462-01 8 121322263 121322263 C T COL14A1 Nonsense_Mutation p.R1473* 0.13 TCGA-CG-4462-01 8 133036823 133036823 C T OC90 Missense_Mutation p.E447K 0.12 deleterious(0.01) benign(0.062) TCGA-CG-4462-01 8 2820779 2820779 C T CSMD1 Missense_Mutation p.R3140H 0.07 benign(0.001) TCGA-CG-4462-01 8 30702127 30702128 - G TEX15 Frame_Shift_Ins p.K1469Nfs*13 0.12 TCGA-CG-4462-01 9 102866786 102866786 C T INVS 5'UTR 0.13 TCGA-CG-4462-01 9 117087117 117087117 A G ORM1 Missense_Mutation p.K126E 0.15 tolerated(0.35) benign(0.043) TCGA-CG-4462-01 9 71098810 71098810 C T PGM5 Missense_Mutation p.T442M 0.06 deleterious(0.03) benign(0.026) TCGA-CG-4462-01 9 84608947 84608947 A C SPATA31D1 Silent p.R1188R 0.09 TCGA-CG-4462-01 X 100125713 100125713 G A NOX1 Missense_Mutation p.L46F 0.11 deleterious(0) probably_damaging(0.999) TCGA-CG-4462-01 X 118604441 118604441 G A SLC25A5 Missense_Mutation p.R235H 0.20 tolerated(0.07) benign(0.207) TCGA-CG-4462-01 X 142795339 142795339 T G SPANXN2 Missense_Mutation p.E113D 0.08 tolerated(0.06) unknown(0) TCGA-CG-4462-01 X 144337383 144337383 T C SPANXN1 3'UTR 0.11 TCGA-CG-4462-01 X 26157454 26157454 T G MAGEB18 Missense_Mutation p.L118V 0.07 deleterious(0) probably_damaging(0.991) TCGA-CG-4462-01 X 30269738 30269738 G T MAGEB1 3'UTR 0.11 TCGA-CG-4462-01 X 40464996 40464996 C T ATP6AP2 Nonsense_Mutation p.R348* 0.11 TCGA-CG-4462-01 X 71895995 71895995 G A PHKA1 Silent p.F181F 0.08 TCGA-CG-4465-01 10 101089442 101089442 G A CNNM1 Missense_Mutation p.G100S 0.30 tolerated(0.77) benign(0.015) TCGA-CG-4465-01 10 101292739 101292739 T C NKX2-3 5'UTR 0.21 TCGA-CG-4465-01 10 106059034 106059034 C T GSTO2 Silent p.L242L 0.10 TCGA-CG-4465-01 10 117075095 117075095 T C ATRNL1 Silent p.N962N 0.29 TCGA-CG-4465-01 10 119042696 119042696 C T PDZD8 3'UTR 0.43 TCGA-CG-4465-01 10 11963154 11963154 G A UPF2 3'UTR 0.31 TCGA-CG-4465-01 10 123244911 123244911 T C FGFR2 Silent p.E732E 0.33 TCGA-CG-4465-01 10 123847368 123847368 A G TACC2 Missense_Mutation p.I1785V 0.07 benign(0) TCGA-CG-4465-01 10 124337331 124337331 C A DMBT1 Silent p.A204A 0.28 TCGA-CG-4465-01 10 124711510 124711510 T - C10orf88 Frame_Shift_Del p.N134Ifs*2 0.30 TCGA-CG-4465-01 10 125601941 125601941 G A CPXM2 Nonsense_Mutation p.Q193* 0.25 TCGA-CG-4465-01 10 128926004 128926004 C A DOCK1 Silent p.S920S 0.43 TCGA-CG-4465-01 10 128974096 128974096 C A FAM196A Missense_Mutation p.L188F 0.39 deleterious(0.03) benign(0.251) TCGA-CG-4465-01 10 13169777 13169777 A G OPTN Silent p.E425E 0.13 TCGA-CG-4465-01 10 134218991 134218991 G A PWWP2B Silent p.P329P 0.42 TCGA-CG-4465-01 10 135020777 135020777 A C KNDC1 Missense_Mutation p.K1239T 0.40 deleterious(0) benign(0.074) TCGA-CG-4465-01 10 15130750 15130750 C T ACBD7 5'UTR 0.24 TCGA-CG-4465-01 10 17271880 17271880 G A VIM Silent p.E153E 0.38 TCGA-CG-4465-01 10 22022455 22022455 C T MLLT10 Silent p.N810N 0.31 TCGA-CG-4465-01 10 27539297 27539297 A G RP11-85G18.6 RNA 0.38 TCGA-CG-4465-01 10 27702585 27702585 C T PTCHD3 Missense_Mutation p.A199T 0.07 tolerated(0.4) benign(0.071) TCGA-CG-4465-01 10 29777649 29777649 G A SVIL Missense_Mutation p.A1410V 0.28 deleterious(0) probably_damaging(1) TCGA-CG-4465-01 10 29821472 29821472 G A SVIL Silent p.C608C 0.16 TCGA-CG-4465-01 10 29840037 29840037 C T SVIL Missense_Mutation p.A106T 0.31 deleterious(0) probably_damaging(1) TCGA-CG-4465-01 10 30630507 30630507 C T MTPAP Missense_Mutation p.A74T 0.24 deleterious(0) probably_damaging(0.998) TCGA-CG-4465-01 10 31791269 31791274 TTTTTA GTTTTTG ZEB1 Splice_Site p.X108_splice 0.26 TCGA-CG-4465-01 10 33214797 33214797 A G ITGB1 Splice_Site p.X262_splice 0.36 TCGA-CG-4465-01 10 50530938 50530938 C - C10orf71 Frame_Shift_Del p.P118Hfs*16 0.13 TCGA-CG-4465-01 10 5920141 5920141 T C ANKRD16 Silent p.P346P 0.33 TCGA-CG-4465-01 10 61868606 61868606 G A ANK3 Missense_Mutation p.A1052V 0.26 possibly_damaging(0.489) TCGA-CG-4465-01 10 61994510 61994511 - T ANK3 Frame_Shift_Ins p.R278Kfs*16 0.15 TCGA-CG-4465-01 10 72195099 72195099 G A AC022532.1 Missense_Mutation p.A16T 0.32 possibly_damaging(0.691) TCGA-CG-4465-01 10 72358611 72358611 G A PRF1 Missense_Mutation p.T289M 0.29 tolerated(0.07) possibly_damaging(0.75) TCGA-CG-4465-01 10 73046593 73046593 C T UNC5B Missense_Mutation p.R234C 0.28 deleterious(0) probably_damaging(1) TCGA-CG-4465-01 10 75406786 75406786 G T SYNPO2L Missense_Mutation p.A875D 0.08 tolerated(0.29) benign(0.031) TCGA-CG-4465-01 10 78646920 78646920 G - KCNMA1 3'Flank 0.25 TCGA-CG-4465-01 10 79554615 79554615 C A DLG5 Missense_Mutation p.K1846N 0.13 deleterious(0) probably_damaging(0.999) TCGA-CG-4465-01 10 85981859 85981859 G A LRIT2 Silent p.C490C 0.32 TCGA-CG-4465-01 10 87406758 87406758 C G GRID1 Intron 0.50 TCGA-CG-4465-01 10 87482810 87482810 T C GRID1 Silent p.T649T 0.26 TCGA-CG-4465-01 10 90682161 90682161 C - STAMBPL1 Frame_Shift_Del p.H408Ifs*18 0.28 TCGA-CG-4465-01 10 93784638 93784638 T C BTAF1 Silent p.D1663D 0.34 TCGA-CG-4465-01 10 95095752 95095752 A G MYOF Missense_Mutation p.F1497L 0.33 tolerated(0.05) probably_damaging(0.998) TCGA-CG-4465-01 10 98715070 98715070 A - LCOR Frame_Shift_Del p.M233Wfs*13 0.25 TCGA-CG-4465-01 10 99377076 99377076 C T MORN4 Missense_Mutation p.R24H 0.38 tolerated(0.05) possibly_damaging(0.812) TCGA-CG-4465-01 11 10483178 10483178 C A AMPD3 Missense_Mutation p.L47M 0.40 tolerated(0.18) benign(0.038) TCGA-CG-4465-01 11 10582327 10582327 T C LYVE1 Missense_Mutation p.I140V 0.28 tolerated(1) benign(0) TCGA-CG-4465-01 11 114569334 114569334 A G NXPE2 Missense_Mutation p.T234A 0.32 tolerated(0.26) benign(0.005) TCGA-CG-4465-01 11 117261607 117261607 A T CEP164 Silent p.A683A 0.31 TCGA-CG-4465-01 11 118083204 118083204 A G AMICA1 Missense_Mutation p.L39P 0.38 deleterious(0) probably_damaging(1) TCGA-CG-4465-01 11 118359351 118359351 G T KMT2A Missense_Mutation p.C1452F 0.30 probably_damaging(0.996) TCGA-CG-4465-01 11 118827661 118827661 C - UPK2 Frame_Shift_Del p.C51Vfs*10 0.29 TCGA-CG-4465-01 11 120989148 120989148 A C TECTA Missense_Mutation p.K308N 0.29 tolerated(0.17) benign(0.174) TCGA-CG-4465-01 11 120996139 120996139 C T TECTA Silent p.Y444Y 0.30 TCGA-CG-4465-01 11 123601252 123601252 C A ZNF202 Missense_Mutation p.E115D 0.27 deleterious(0) probably_damaging(0.997) TCGA-CG-4465-01 11 124756593 124756593 C - ROBO4 Frame_Shift_Del p.G854Efs*20 0.42 TCGA-CG-4465-01 11 124956241 124956241 T C SLC37A2 Intron 0.40 TCGA-CG-4465-01 11 126135974 126135974 G A SRPR Missense_Mutation p.A312V 0.33 tolerated(0.49) benign(0.002) TCGA-CG-4465-01 11 134241040 134241040 C A GLB1L2 Missense_Mutation p.Q452K 0.28 deleterious(0.01) possibly_damaging(0.661) TCGA-CG-4465-01 11 15133994 15133994 C T INSC 5'UTR 0.40 TCGA-CG-4465-01 11 17483306 17483306 G A ABCC8 Missense_Mutation p.R216C 0.35 deleterious(0) probably_damaging(0.976) TCGA-CG-4465-01 11 17742934 17742934 G A MYOD1 Missense_Mutation p.R281H 0.22 tolerated_low_confidence(0.13) benign(0.083) TCGA-CG-4465-01 11 3249927 3249927 C T MRGPRE Missense_Mutation p.G34S 0.34 tolerated(1) benign(0.001) TCGA-CG-4465-01 11 34502322 34502322 A G ELF5 Missense_Mutation p.L233P 0.11 deleterious(0) probably_damaging(1) TCGA-CG-4465-01 11 4389524 4389524 A G OR52B4 Translation_Start_Site p.M1? 0.27 deleterious(0) possibly_damaging(0.889) TCGA-CG-4465-01 11 44331661 44331661 A G ALX4 5'UTR 0.25 TCGA-CG-4465-01 11 47602323 47602323 A G NDUFS3 Intron 0.43 TCGA-CG-4465-01 11 47605980 47605980 C - NDUFS3 Frame_Shift_Del p.P249Rfs*38 0.10 TCGA-CG-4465-01 11 51515361 51515361 T C OR4C46 Missense_Mutation p.V27A 0.29 tolerated_low_confidence(0.43) benign(0.005) TCGA-CG-4465-01 11 5248013 5248013 G C HBB Missense_Mutation p.P37A 0.37 deleterious(0) probably_damaging(0.973) TCGA-CG-4465-01 11 55681941 55681941 A G OR5W2 Missense_Mutation p.S40P 0.24 deleterious(0) benign(0.039) TCGA-CG-4465-01 11 55681953 55681953 T C OR5W2 Missense_Mutation p.I36V 0.22 tolerated(0.27) benign(0.002) TCGA-CG-4465-01 11 56019856 56019856 T - OR5T3 Frame_Shift_Del p.F62Lfs*8 0.25 TCGA-CG-4465-01 11 57575717 57575717 G A CTNND1 Missense_Mutation p.E682K 0.24 deleterious(0.01) possibly_damaging(0.493) TCGA-CG-4465-01 11 58378437 58378437 A T ZFP91 Missense_Mutation p.E211V 0.27 deleterious_low_confidence(0.04) possibly_damaging(0.777) TCGA-CG-4465-01 11 59416970 59416970 A G PATL1 Silent p.Y566Y 0.48 TCGA-CG-4465-01 11 59564791 59564791 G A STX3 Silent p.L274L 0.27 TCGA-CG-4465-01 11 60476247 60476247 G - MS4A8 Frame_Shift_Del p.G177Vfs*2 0.12 TCGA-CG-4465-01 11 61917561 61917561 G A INCENP Silent p.P808P 0.29 TCGA-CG-4465-01 11 62473007 62473007 G A BSCL2 Missense_Mutation p.A57V 0.41 tolerated_low_confidence(0.09) benign(0.014) TCGA-CG-4465-01 11 62649529 62649529 A - SLC3A2 Frame_Shift_Del p.K301Rfs*31 0.33 TCGA-CG-4465-01 11 64525753 64525753 C A PYGM Missense_Mutation p.G165W 0.34 deleterious(0) probably_damaging(0.999) TCGA-CG-4465-01 11 64897791 64897791 C G SYVN1 Missense_Mutation p.G389A 0.38 tolerated(0.83) unknown(0) TCGA-CG-4465-01 11 65321785 65321785 G A LTBP3 Missense_Mutation p.P133L 0.37 deleterious(0) probably_damaging(0.999) TCGA-CG-4465-01 11 6630183 6630183 A G ILK Missense_Mutation p.T173A 0.23 tolerated(0.17) benign(0.02) TCGA-CG-4465-01 11 66325516 66325517 - G CTD-3074O7.2 3'Flank 0.36 TCGA-CG-4465-01 11 67410182 67410182 G T ACY3 3'UTR 0.38 TCGA-CG-4465-01 11 67818098 67818098 T G TCIRG1 Missense_Mutation p.L794R 0.15 deleterious(0) probably_damaging(1) TCGA-CG-4465-01 11 6898607 6898607 C T OR10A4 Silent p.S243S 0.39 TCGA-CG-4465-01 11 73007624 73007624 C T P2RY6 Missense_Mutation p.R21C 0.42 deleterious(0.01) benign(0.386) TCGA-CG-4465-01 11 73748596 73748596 G A C2CD3 Silent p.S1936S 0.29 TCGA-CG-4465-01 11 85428536 85428536 G A SYTL2 Silent p.C873C 0.28 TCGA-CG-4465-01 11 85435356 85435356 G - SYTL2 Frame_Shift_Del p.P715Qfs*41 0.29 TCGA-CG-4465-01 11 9167317 9167317 C - DENND5A Frame_Shift_Del p.G968Afs*29 0.31 TCGA-CG-4465-01 12 10251542 10251542 G T CLEC1A 5'UTR 0.39 TCGA-CG-4465-01 12 105589059 105589059 T - APPL2 Frame_Shift_Del p.K413Nfs*11 0.31 TCGA-CG-4465-01 12 108147777 108147777 T C PRDM4 Silent p.L85L 0.39 TCGA-CG-4465-01 12 110370677 110370677 C T GIT2 3'UTR 0.30 TCGA-CG-4465-01 12 113867031 113867032 - C SDSL Frame_Shift_Ins p.E96Rfs*48 0.28 TCGA-CG-4465-01 12 117615412 117615412 T - FBXO21 Frame_Shift_Del p.I169Ffs*11 0.25 TCGA-CG-4465-01 12 120208708 120208708 G A CIT Missense_Mutation p.R697C 0.12 tolerated(0.06) benign(0.14) TCGA-CG-4465-01 12 123490022 123490022 C A PITPNM2 Missense_Mutation p.M239I 0.15 tolerated(0.46) benign(0.003) TCGA-CG-4465-01 12 123794282 123794283 - T SBNO1 Frame_Shift_Ins p.N1139Kfs*5 0.39 TCGA-CG-4465-01 12 124155800 124155800 C T TCTN2 Missense_Mutation p.P5S 0.39 tolerated_low_confidence(0.21) unknown(0) TCGA-CG-4465-01 12 124265777 124265777 C T DNAH10 Missense_Mutation p.R197W 0.32 possibly_damaging(0.836) TCGA-CG-4465-01 12 12491412 12491412 G A MANSC1 Silent p.N102N 0.35 TCGA-CG-4465-01 12 129559011 129559011 C A TMEM132D Silent p.G903G 0.32 TCGA-CG-4465-01 12 129559436 129559436 C A TMEM132D Nonsense_Mutation p.G762* 0.23 TCGA-CG-4465-01 12 130884319 130884319 A T RIMBP2 Missense_Mutation p.F1013I 0.05 deleterious(0) probably_damaging(0.998) TCGA-CG-4465-01 12 130898840 130898840 G A RIMBP2 Nonsense_Mutation p.R828* 0.06 TCGA-CG-4465-01 12 132402066 132402066 C - ULK1 Frame_Shift_Del p.Q767Rfs*57 0.59 TCGA-CG-4465-01 12 132464315 132464315 C T EP400 Missense_Mutation p.A471V 0.29 unknown(0) TCGA-CG-4465-01 12 132471349 132471349 T G EP400 Silent p.T740T 0.04 TCGA-CG-4465-01 12 132511986 132511986 C T EP400 Silent p.G1673G 0.31 TCGA-CG-4465-01 12 21229503 21229503 G T SLCO1B7 Missense_Mutation p.G575V 0.33 tolerated(0.16) possibly_damaging(0.813) TCGA-CG-4465-01 12 24736450 24736450 A G LINC00477 RNA 0.17 TCGA-CG-4465-01 12 31585981 31585981 T - DENND5B Intron 0.34 TCGA-CG-4465-01 12 42840484 42840485 - A PPHLN1 3'UTR 0.42 TCGA-CG-4465-01 12 48183343 48183343 G A HDAC7 Missense_Mutation p.R704W 0.09 deleterious(0) probably_damaging(1) TCGA-CG-4465-01 12 50499353 50499353 A G GPD1 Missense_Mutation p.Q81R 0.24 tolerated(0.08) benign(0.001) TCGA-CG-4465-01 12 50848191 50848191 A - LARP4 Frame_Shift_Del p.N373Ifs*3 0.28 TCGA-CG-4465-01 12 53004555 53004555 G A KRT73 Missense_Mutation p.A392V 0.33 deleterious(0) probably_damaging(0.984) TCGA-CG-4465-01 12 53298482 53298482 A T KRT8 Missense_Mutation p.I123N 0.34 deleterious(0) possibly_damaging(0.781) TCGA-CG-4465-01 12 56078934 56078934 G - ITGA7 Frame_Shift_Del p.R1112Gfs*115 0.39 TCGA-CG-4465-01 12 56482560 56482560 C T ERBB3 Silent p.R339R 0.37 TCGA-CG-4465-01 12 56642004 56642004 T C ANKRD52 Missense_Mutation p.Y594C 0.07 deleterious(0.03) benign(0.351) TCGA-CG-4465-01 12 56915862 56915864 AAC - RBMS2 In_Frame_Del p.N20del 0.31 TCGA-CG-4465-01 12 56994529 56994529 A G BAZ2A Missense_Mutation p.L1515P 0.27 deleterious(0) probably_damaging(0.992) TCGA-CG-4465-01 12 57440668 57440668 G - MYO1A Frame_Shift_Del p.L174Sfs*15 0.27 TCGA-CG-4465-01 12 57652675 57652675 G - R3HDM2 Frame_Shift_Del p.Q753Rfs*6 0.26 TCGA-CG-4465-01 12 57858512 57858512 T C GLI1 Missense_Mutation p.S84P 0.37 deleterious(0) probably_damaging(0.993) TCGA-CG-4465-01 12 58020446 58020446 G T B4GALNT1 3'UTR 0.43 TCGA-CG-4465-01 12 58209783 58209783 G A AVIL Missense_Mutation p.P14L 0.31 deleterious(0.03) possibly_damaging(0.816) TCGA-CG-4465-01 12 64238564 64238564 G A SRGAP1 5'UTR 0.34 TCGA-CG-4465-01 12 64803776 64803776 C T XPOT 5'UTR 0.11 TCGA-CG-4465-01 12 6554270 6554270 G A CD27 Silent p.R3R 0.21 TCGA-CG-4465-01 12 6697051 6697051 C T CHD4 Missense_Mutation p.R1177H 0.32 deleterious(0.03) possibly_damaging(0.84) TCGA-CG-4465-01 12 69109437 69109437 C T NUP107 Missense_Mutation p.P334S 0.28 tolerated(0.07) possibly_damaging(0.835) TCGA-CG-4465-01 12 71094956 71094956 G A PTPRR Silent p.D385D 0.34 TCGA-CG-4465-01 12 72666574 72666574 G A TRHDE Missense_Mutation p.A6T 0.27 tolerated_low_confidence(0.76) benign(0.003) TCGA-CG-4465-01 12 75804255 75804255 A - GLIPR1L2 Frame_Shift_Del p.K94Nfs*105 0.26 TCGA-CG-4465-01 12 81657028 81657028 T C PPFIA2 Missense_Mutation p.R1233G 0.17 deleterious_low_confidence(0) benign(0.268) TCGA-CG-4465-01 12 88524079 88524079 T - CEP290 Frame_Shift_Del p.N212Tfs*14 0.30 TCGA-CG-4465-01 12 9243902 9243902 G T A2M Silent p.A788A 0.30 TCGA-CG-4465-01 12 9907700 9907700 T C CD69 Silent p.E115E 0.32 TCGA-CG-4465-01 13 111944754 111944754 C A ARHGEF7 3'UTR 0.27 TCGA-CG-4465-01 13 114514859 114514859 C - TMEM255B Frame_Shift_Del p.Y324Tfs*9 0.33 TCGA-CG-4465-01 13 21303079 21303079 C T N6AMT2 3'UTR 0.35 TCGA-CG-4465-01 13 24233283 24233283 C T TNFRSF19 Silent p.T180T 0.39 TCGA-CG-4465-01 13 36748962 36748962 G A SOHLH2 Missense_Mutation p.P306L 0.20 deleterious(0) probably_damaging(1) TCGA-CG-4465-01 13 37012966 37012966 A G CCNA1 Silent p.K285K 0.24 TCGA-CG-4465-01 13 42701682 42701682 C T DGKH Silent p.R92R 0.39 TCGA-CG-4465-01 13 42874486 42874486 A - AKAP11 Frame_Shift_Del p.N537Ifs*8 0.25 TCGA-CG-4465-01 13 44434049 44434049 A G CCDC122 Missense_Mutation p.V105A 0.31 deleterious(0.01) possibly_damaging(0.631) TCGA-CG-4465-01 13 67801050 67801050 A G PCDH9 Missense_Mutation p.L508P 0.32 deleterious(0) probably_damaging(0.999) TCGA-CG-4465-01 13 73337684 73337684 T - DIS3 Frame_Shift_Del p.I678Ffs*59 0.31 TCGA-CG-4465-01 13 76432182 76432182 T A LMO7 3'UTR 0.46 TCGA-CG-4465-01 13 79175974 79175974 C T POU4F1 Missense_Mutation p.R279H 0.41 deleterious(0) unknown(0) TCGA-CG-4465-01 13 88328786 88328786 C A SLITRK5 Missense_Mutation p.N381K 0.33 deleterious(0) benign(0.109) TCGA-CG-4465-01 13 92101092 92101092 G A GPC5 Missense_Mutation p.A81T 0.08 deleterious(0.01) possibly_damaging(0.835) TCGA-CG-4465-01 13 95840745 95840745 C T ABCC4 Missense_Mutation p.E439K 0.31 deleterious(0.05) benign(0.042) TCGA-CG-4465-01 13 99037041 99037041 A G FARP1 Missense_Mutation p.Y185C 0.11 deleterious(0) probably_damaging(0.998) TCGA-CG-4465-01 14 105174185 105174185 C - INF2 Frame_Shift_Del p.V530Wfs*28 0.32 TCGA-CG-4465-01 14 105416562 105416562 G - AHNAK2 Frame_Shift_Del p.K1743Rfs*7 0.11 TCGA-CG-4465-01 14 20818769 20818769 A G PARP2 Missense_Mutation p.R150G 0.37 deleterious(0) probably_damaging(0.992) TCGA-CG-4465-01 14 20942680 20942680 C A PNP Silent p.A77A 0.24 TCGA-CG-4465-01 14 23829429 23829429 C A EFS Missense_Mutation p.C120F 0.30 tolerated(0.18) benign(0.127) TCGA-CG-4465-01 14 23874468 23874470 AGA - MYH6 In_Frame_Del p.F155del 0.32 TCGA-CG-4465-01 14 32562346 32562346 A - ARHGAP5 Frame_Shift_Del p.R826Gfs*17 0.14 TCGA-CG-4465-01 14 38679277 38679277 T C SSTR1 Missense_Mutation p.F228S 0.26 tolerated(0.92) probably_damaging(0.976) TCGA-CG-4465-01 14 50088621 50088621 A G MGAT2 Missense_Mutation p.N212S 0.35 deleterious(0) probably_damaging(1) TCGA-CG-4465-01 14 68238816 68238816 G A ZFYVE26 Missense_Mutation p.P1811L 0.24 deleterious(0) possibly_damaging(0.865) TCGA-CG-4465-01 14 77935519 77935519 C T AHSA1 Missense_Mutation p.T315M 0.29 tolerated(0.4) possibly_damaging(0.889) TCGA-CG-4465-01 14 92058236 92058236 T - CATSPERB Frame_Shift_Del p.V941Ffs*34 0.26 TCGA-CG-4465-01 14 93954017 93954017 T C UNC79 Missense_Mutation p.S33P 0.33 tolerated(0.11) benign(0.405) TCGA-CG-4465-01 14 99182697 99182697 G A C14orf177 Missense_Mutation p.A57T 0.25 tolerated_low_confidence(0.08) possibly_damaging(0.682) TCGA-CG-4465-01 15 100649263 100649263 G A ADAMTS17 Silent p.A649A 0.27 TCGA-CG-4465-01 15 27725940 27725940 A C GABRG3 Intron 0.33 TCGA-CG-4465-01 15 28473458 28473458 G A HERC2 Silent p.L1790L 0.35 TCGA-CG-4465-01 15 32460285 32460285 G A CHRNA7 Missense_Mutation p.A408T 0.35 tolerated(0.66) benign(0.002) TCGA-CG-4465-01 15 33359423 33359423 G A FMN1 Silent p.N221N 0.36 TCGA-CG-4465-01 15 38773701 38773701 T C FAM98B Intron 0.32 TCGA-CG-4465-01 15 42000020 42000020 T - MGA Frame_Shift_Del p.W763Gfs*54 0.16 TCGA-CG-4465-01 15 42054515 42054516 - G MGA Frame_Shift_Ins p.K2569Efs*54 0.19 TCGA-CG-4465-01 15 42371822 42371822 C A PLA2G4D Silent p.R410R 0.27 TCGA-CG-4465-01 15 55912892 55912892 A - PRTG Frame_Shift_Del p.F1056Sfs*30 0.22 TCGA-CG-4465-01 15 58838067 58838067 T C LIPC Missense_Mutation p.I234T 0.08 deleterious(0) probably_damaging(0.99) TCGA-CG-4465-01 15 63446139 63446139 T G RPS27L 3'UTR 0.36 TCGA-CG-4465-01 15 63551864 63551864 C T RAB8B Silent p.S151S 0.24 TCGA-CG-4465-01 15 65450095 65450095 T G CLPX Missense_Mutation p.K349T 0.06 deleterious(0.01) probably_damaging(0.978) TCGA-CG-4465-01 15 65551732 65551732 A G PARP16 3'UTR 0.25 TCGA-CG-4465-01 15 71704113 71704113 C - THSD4 Frame_Shift_Del p.C370Vfs*23 0.08 TCGA-CG-4465-01 15 75651071 75651071 G A MAN2C1 Silent p.D757D 0.37 TCGA-CG-4465-01 15 83805312 83805312 T - TM6SF1 Frame_Shift_Del p.L336* 0.33 TCGA-CG-4465-01 15 83935708 83935708 G A BNC1 Silent p.P105P 0.37 TCGA-CG-4465-01 15 85165031 85165031 C T ZSCAN2 Silent p.C535C 0.32 TCGA-CG-4465-01 15 89811680 89811680 G T FANCI Missense_Mutation p.G269V 0.04 deleterious(0) probably_damaging(0.999) TCGA-CG-4465-01 15 91037956 91037956 A G IQGAP1 Missense_Mutation p.K1547R 0.13 tolerated(0.18) benign(0.085) TCGA-CG-4465-01 15 93588281 93588281 G C RGMA Missense_Mutation p.P442A 0.67 tolerated(0.8) unknown(0) TCGA-CG-4465-01 15 99672605 99672605 G A SYNM Missense_Mutation p.G1346D 0.36 tolerated(0.09) benign(0.009) TCGA-CG-4465-01 16 135493 135493 C A MPG Missense_Mutation p.A205D 0.29 tolerated(0.09) possibly_damaging(0.606) TCGA-CG-4465-01 16 135720 135720 G T MPG Missense_Mutation p.G281C 0.26 deleterious(0) probably_damaging(0.997) TCGA-CG-4465-01 16 1584349 1584349 G A TMEM204 Missense_Mutation p.A25T 0.24 tolerated_low_confidence(0.08) probably_damaging(0.991) TCGA-CG-4465-01 16 1652483 1652483 G A IFT140 Missense_Mutation p.T86M 0.07 tolerated(0.15) benign(0.029) TCGA-CG-4465-01 16 1817877 1817877 G T MAPK8IP3 Missense_Mutation p.G1160C 0.29 deleterious(0) probably_damaging(1) TCGA-CG-4465-01 16 19567040 19567040 G A C16orf62 Missense_Mutation p.V86M 0.10 deleterious_low_confidence(0.01) benign(0.027) TCGA-CG-4465-01 16 21261872 21261872 C T ANKS4B Silent p.L329L 0.36 TCGA-CG-4465-01 16 2164260 2164260 G T PKD1 Missense_Mutation p.L922I 0.40 benign(0.063) TCGA-CG-4465-01 16 2225603 2225603 G A TRAF7 Missense_Mutation p.G536S 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-CG-4465-01 16 24372865 24372865 A C CACNG3 Missense_Mutation p.K210T 0.14 tolerated(0.15) benign(0.004) TCGA-CG-4465-01 16 24931302 24931302 C T ARHGAP17 3'UTR 0.10 TCGA-CG-4465-01 16 28837682 28837682 G A ATXN2L Missense_Mutation p.R196Q 0.30 deleterious(0.03) possibly_damaging(0.899) TCGA-CG-4465-01 16 28970422 28970422 G C NFATC2IP Splice_Site p.X367_splice 0.19 TCGA-CG-4465-01 16 2905627 2905627 G C PRSS22 Silent p.L169L 0.26 TCGA-CG-4465-01 16 29913005 29913005 C T ASPHD1 Missense_Mutation p.P238L 0.16 deleterious(0.03) possibly_damaging(0.694) TCGA-CG-4465-01 16 30097645 30097645 C T TBX6 Silent p.A404A 0.26 TCGA-CG-4465-01 16 3170173 3170173 C T ZNF205 Silent p.Y504Y 0.12 TCGA-CG-4465-01 16 335661 335661 C A PDIA2 Silent p.S359S 0.30 TCGA-CG-4465-01 16 3647657 3647657 G - SLX4 Frame_Shift_Del p.P469Hfs*4 0.26 TCGA-CG-4465-01 16 4751097 4751097 T G ANKS3 Missense_Mutation p.Q386H 0.05 tolerated(0.19) probably_damaging(0.998) TCGA-CG-4465-01 16 50339707 50339707 G A ADCY7 Missense_Mutation p.D567N 0.15 deleterious(0.01) probably_damaging(0.986) TCGA-CG-4465-01 16 50826572 50826572 T - CYLD Frame_Shift_Del p.P771Lfs*5 0.35 TCGA-CG-4465-01 16 57060176 57060176 C T NLRC5 Nonsense_Mutation p.Q441* 0.19 TCGA-CG-4465-01 16 57060249 57060249 T C NLRC5 Missense_Mutation p.L465P 0.41 deleterious(0) probably_damaging(0.971) TCGA-CG-4465-01 16 58557362 58557362 G T CNOT1 Missense_Mutation p.P2277T 0.30 deleterious(0) probably_damaging(0.998) TCGA-CG-4465-01 16 66976054 66976054 G A CES2 Missense_Mutation p.G459E 0.33 deleterious(0.04) benign(0.422) TCGA-CG-4465-01 16 67214239 67214239 C T KIAA0895L Missense_Mutation p.R92Q 0.38 tolerated_low_confidence(0.34) benign(0.002) TCGA-CG-4465-01 16 67292327 67292327 G A SLC9A5 Missense_Mutation p.D535N 0.11 deleterious(0) possibly_damaging(0.871) TCGA-CG-4465-01 16 70422378 70422378 G T ST3GAL2 Missense_Mutation p.P202H 0.34 probably_damaging(0.996) TCGA-CG-4465-01 16 84690684 84690684 G A KLHL36 Missense_Mutation p.G91S 0.28 deleterious(0.04) probably_damaging(0.94) TCGA-CG-4465-01 16 8740057 8740057 A G METTL22 3'UTR 0.37 TCGA-CG-4465-01 16 88666204 88666204 A - ZC3H18 Frame_Shift_Del p.A315Qfs*18 0.31 TCGA-CG-4465-01 16 88748098 88748098 C T SNAI3 Missense_Mutation p.C34Y 0.19 tolerated(0.3) benign(0.008) TCGA-CG-4465-01 16 89167698 89167698 T C ACSF3 Silent p.S203S 0.26 TCGA-CG-4465-01 17 11607574 11607574 G T DNAH9 Missense_Mutation p.A1736S 0.30 benign(0.003) TCGA-CG-4465-01 17 15406175 15406175 T - TVP23C 3'UTR 0.33 TCGA-CG-4465-01 17 15902817 15902817 G A TTC19 5'UTR 0.32 TCGA-CG-4465-01 17 17046886 17046886 C - MPRIP Frame_Shift_Del p.P353Qfs*30 0.30 TCGA-CG-4465-01 17 17399230 17399230 C A RASD1 Missense_Mutation p.R89L 0.27 deleterious(0) probably_damaging(0.911) TCGA-CG-4465-01 17 18154776 18154776 G C FLII Missense_Mutation p.R467G 0.36 tolerated(0.19) benign(0) TCGA-CG-4465-01 17 21318850 21318850 C T KCNJ12 Missense_Mutation p.R66C 0.09 deleterious(0) probably_damaging(1) TCGA-CG-4465-01 17 2310297 2310297 T C AC006435.1 3'UTR 0.38 TCGA-CG-4465-01 17 26966334 26966334 T - KIAA0100 Frame_Shift_Del p.R410Efs*56 0.30 TCGA-CG-4465-01 17 30665238 30665238 T - C17orf75 Frame_Shift_Del p.G161Dfs*16 0.30 TCGA-CG-4465-01 17 3494385 3494385 C T SHPK Silent p.L159L 0.14 TCGA-CG-4465-01 17 36522218 36522218 G A SOCS7 Missense_Mutation p.S370N 0.44 tolerated(0.43) benign(0.002) TCGA-CG-4465-01 17 39974510 39974510 C T FKBP10 Silent p.D187D 0.29 TCGA-CG-4465-01 17 40474420 40474420 C A STAT3 Missense_Mutation p.D661Y 0.32 deleterious(0.03) probably_damaging(0.979) TCGA-CG-4465-01 17 41955297 41955297 C T MPP2 Missense_Mutation p.G513R 0.26 tolerated(0.18) probably_damaging(0.971) TCGA-CG-4465-01 17 43322382 43322382 C T FMNL1 Silent p.L879L 0.30 TCGA-CG-4465-01 17 45016026 45016026 G A GOSR2 Missense_Mutation p.R180Q 0.29 deleterious(0.01) benign(0.287) TCGA-CG-4465-01 17 45754442 45754442 C A KPNB1 Missense_Mutation p.N684K 0.15 tolerated(1) benign(0) TCGA-CG-4465-01 17 46189428 46189428 C T SNX11 Missense_Mutation p.S8L 0.05 tolerated(1) benign(0) TCGA-CG-4465-01 17 46627925 46627925 C - HOXB3 Frame_Shift_Del p.G356Afs*73 0.32 TCGA-CG-4465-01 17 46628177 46628177 G A HOXB3 Missense_Mutation p.T272M 0.14 tolerated(0.07) benign(0.294) TCGA-CG-4465-01 17 46628473 46628473 G A HOXB3 Silent p.G173G 0.26 TCGA-CG-4465-01 17 48154742 48154743 - C ITGA3 Frame_Shift_Ins p.G692Rfs*6 0.34 TCGA-CG-4465-01 17 48562300 48562300 G A RSAD1 3'UTR 0.24 TCGA-CG-4465-01 17 4905816 4905816 C T KIF1C Missense_Mutation p.R163W 0.36 deleterious(0) possibly_damaging(0.523) TCGA-CG-4465-01 17 4995923 4995923 G - ZFP3 Frame_Shift_Del p.N377Tfs*170 0.25 TCGA-CG-4465-01 17 5364373 5364373 G A DHX33 Silent p.G245G 0.07 TCGA-CG-4465-01 17 57297901 57297901 C T GDPD1 5'UTR 0.28 TCGA-CG-4465-01 17 58980003 58980003 G A BCAS3 Missense_Mutation p.R254H 0.35 tolerated(0.52) benign(0.018) TCGA-CG-4465-01 17 59560345 59560345 C - TBX4 Frame_Shift_Del p.P371Lfs*8 0.31 TCGA-CG-4465-01 17 61901290 61901290 C T FTSJ3 Missense_Mutation p.E393K 0.14 tolerated(0.05) probably_damaging(0.98) TCGA-CG-4465-01 17 62081214 62081214 G T ICAM2 Missense_Mutation p.L147I 0.18 tolerated(0.07) possibly_damaging(0.552) TCGA-CG-4465-01 17 62137923 62137923 G A ERN1 Missense_Mutation p.A371V 0.35 tolerated(1) possibly_damaging(0.783) TCGA-CG-4465-01 17 63532568 63532568 G - AXIN2 Frame_Shift_Del p.R671Afs*18 0.44 TCGA-CG-4465-01 17 64059082 64059082 T - CEP112 Frame_Shift_Del p.K358Sfs*6 0.31 TCGA-CG-4465-01 17 66040114 66040114 C T KPNA2 Missense_Mutation p.A364V 0.03 deleterious(0.01) benign(0.096) TCGA-CG-4465-01 17 67125767 67125767 A - ABCA6 Frame_Shift_Del p.L306Yfs*7 0.37 TCGA-CG-4465-01 17 70119056 70119115 GACTCGCCACACTCCTCCTCCGGCATGAGCGAGGTGCACTCCCCCGGCGAGCACTCGGGT - SOX9 Splice_Site p.X210_splice 0.17 TCGA-CG-4465-01 17 70120258 70120258 C T SOX9 Silent p.Y420Y 0.28 TCGA-CG-4465-01 17 7193637 7193637 G - YBX2 Frame_Shift_Del p.P226Hfs*22 0.40 TCGA-CG-4465-01 17 7246726 7246726 C T ACAP1 Missense_Mutation p.R125W 0.34 deleterious(0) probably_damaging(0.958) TCGA-CG-4465-01 17 7328966 7328966 G T C17orf74 5'UTR 0.27 TCGA-CG-4465-01 17 76045711 76045711 A G TNRC6C Missense_Mutation p.M190V 0.32 tolerated(0.13) benign(0.001) TCGA-CG-4465-01 17 76832231 76832231 C T USP36 Missense_Mutation p.R72H 0.32 tolerated(0.43) benign(0.045) TCGA-CG-4465-01 17 78069228 78069228 G A CCDC40 Missense_Mutation p.R1000Q 0.29 deleterious(0.04) possibly_damaging(0.904) TCGA-CG-4465-01 17 914045 914045 C T ABR Silent p.T720T 0.28 TCGA-CG-4465-01 18 11881145 11881145 G A GNAL 3'UTR 0.33 TCGA-CG-4465-01 18 13049878 13049878 C T CEP192 Missense_Mutation p.T1002M 0.23 deleterious(0) probably_damaging(0.984) TCGA-CG-4465-01 18 15323264 15323264 T A RNU6-721P 5'Flank 0.23 TCGA-CG-4465-01 18 28913591 28913591 C T DSG1 Nonsense_Mutation p.R242* 0.29 TCGA-CG-4465-01 18 30873148 30873148 T - CCDC178 Frame_Shift_Del p.N384Mfs*13 0.25 TCGA-CG-4465-01 18 33848647 33848647 A - MOCOS Frame_Shift_Del 0.40 TCGA-CG-4465-01 18 42532846 42532846 T G SETBP1 Missense_Mutation p.F1181V 0.20 tolerated(0.18) probably_damaging(0.99) TCGA-CG-4465-01 18 44560283 44560283 C T TCEB3B Silent p.P451P 0.32 TCGA-CG-4465-01 18 55217935 55217935 C T FECH 3'UTR 0.10 TCGA-CG-4465-01 18 56892843 56892843 C T GRP Missense_Mutation p.L87F 0.30 deleterious(0.02) benign(0.346) TCGA-CG-4465-01 18 71920841 71920841 C T CYB5A Missense_Mutation p.R128H 0.12 tolerated(0.15) benign(0.007) TCGA-CG-4465-01 18 74153438 74153438 G T ZNF516 Missense_Mutation p.R525S 0.31 deleterious(0) possibly_damaging(0.896) TCGA-CG-4465-01 18 74817183 74817183 G A MBP Missense_Mutation p.A12V 0.28 tolerated_low_confidence(0.27) benign(0.004) TCGA-CG-4465-01 18 76753543 76753543 G A SALL3 Missense_Mutation p.V518M 0.32 deleterious(0) probably_damaging(0.973) TCGA-CG-4465-01 18 77475181 77475181 A C CTDP1 Missense_Mutation p.Q574P 0.33 tolerated(0.05) probably_damaging(0.976) TCGA-CG-4465-01 19 1010864 1010864 C T TMEM259 Missense_Mutation p.E450K 0.38 deleterious(0) probably_damaging(0.999) TCGA-CG-4465-01 19 10221628 10221628 C T PPAN Silent p.F403F 0.25 TCGA-CG-4465-01 19 10277310 10277310 G A DNMT1 Silent p.G285G 0.04 TCGA-CG-4465-01 19 12637603 12637604 AT - ZNF564 Frame_Shift_Del p.M440Dfs*10 0.29 TCGA-CG-4465-01 19 12759146 12759146 G A MAN2B1 Missense_Mutation p.A836V 0.24 tolerated(0.08) benign(0.004) TCGA-CG-4465-01 19 14074062 14074062 G A RFX1 Silent p.L866L 0.37 TCGA-CG-4465-01 19 18376152 18376152 G A KIAA1683 Missense_Mutation p.A733V 0.30 tolerated(0.23) benign(0.044) TCGA-CG-4465-01 19 18700331 18700331 C T C19orf60 Silent p.F97F 0.40 TCGA-CG-4465-01 19 19115185 19115185 G A SUGP2 Silent p.P907P 0.39 TCGA-CG-4465-01 19 19166101 19166101 C A ARMC6 Missense_Mutation p.L351M 0.11 tolerated(0.12) possibly_damaging(0.607) TCGA-CG-4465-01 19 2810725 2810725 C T THOP1 Missense_Mutation p.A577V 0.20 deleterious(0.03) benign(0.125) TCGA-CG-4465-01 19 2852714 2852714 G A ZNF555 Silent p.R217R 0.34 TCGA-CG-4465-01 19 2877633 2877633 C T ZNF556 Missense_Mutation p.T226I 0.23 deleterious(0) probably_damaging(0.985) TCGA-CG-4465-01 19 3053784 3053784 C - AES 3'UTR 0.29 TCGA-CG-4465-01 19 31767997 31767998 - G TSHZ3 Frame_Shift_Ins p.Q901Pfs*79 0.19 TCGA-CG-4465-01 19 35832248 35832249 - C CD22 Frame_Shift_Ins p.R506Pfs*25 0.29 TCGA-CG-4465-01 19 36124838 36124838 C T RBM42 Silent p.L312L 0.21 TCGA-CG-4465-01 19 37368416 37368416 A C ZNF345 Missense_Mutation p.K228N 0.04 deleterious(0) probably_damaging(0.953) TCGA-CG-4465-01 19 37368636 37368636 A G ZNF345 Missense_Mutation p.T302A 0.34 tolerated(0.37) benign(0.033) TCGA-CG-4465-01 19 39871247 39871247 C T SAMD4B Missense_Mutation p.S557L 0.31 deleterious(0) possibly_damaging(0.82) TCGA-CG-4465-01 19 39879317 39879317 C T PAF1 Splice_Site p.X247_splice 0.27 TCGA-CG-4465-01 19 41123127 41123127 G A LTBP4 Missense_Mutation p.V1089M 0.29 deleterious(0.05) probably_damaging(0.957) TCGA-CG-4465-01 19 41268833 41268833 C T SNRPA Missense_Mutation p.R152C 0.11 deleterious(0.04) benign(0.001) TCGA-CG-4465-01 19 42471440 42471440 C T ATP1A3 Missense_Mutation p.D1005N 0.41 deleterious(0.04) probably_damaging(0.999) TCGA-CG-4465-01 19 42795871 42795871 C T CIC Nonsense_Mutation p.Q954* 0.24 TCGA-CG-4465-01 19 43697386 43697386 C T PSG4 3'UTR 0.17 TCGA-CG-4465-01 19 44251591 44251591 T C SMG9 Intron 0.38 TCGA-CG-4465-01 19 44278410 44278410 C T KCNN4 Missense_Mutation p.R206H 0.54 deleterious(0.02) probably_damaging(0.964) TCGA-CG-4465-01 19 44738862 44738862 G T ZNF227 Missense_Mutation p.K93N 0.35 tolerated(0.25) benign(0.002) TCGA-CG-4465-01 19 45885875 45885875 G A PPP1R13L Silent p.T786T 0.37 TCGA-CG-4465-01 19 46095200 46095200 G T GPR4 5'UTR 0.27 TCGA-CG-4465-01 19 46815457 46815457 C A HIF3A Silent p.I270I 0.35 TCGA-CG-4465-01 19 47151573 47151573 G T DACT3 3'UTR 0.32 TCGA-CG-4465-01 19 4818338 4818338 C T TICAM1 Missense_Mutation p.A18T 0.38 tolerated(0.1) benign(0.08) TCGA-CG-4465-01 19 4852210 4852210 A G PLIN3 Missense_Mutation p.V151A 0.42 deleterious(0.01) possibly_damaging(0.633) TCGA-CG-4465-01 19 49000740 49000740 C - LMTK3 Frame_Shift_Del p.D1225Tfs*120 0.37 TCGA-CG-4465-01 19 50102838 50102838 C T PRR12 Missense_Mutation p.P1330S 0.25 possibly_damaging(0.803) TCGA-CG-4465-01 19 50785086 50785086 G A MYH14 Missense_Mutation p.R1509H 0.27 deleterious(0) probably_damaging(0.977) TCGA-CG-4465-01 19 51219986 51219986 A G SHANK1 Missense_Mutation p.V64A 0.10 benign(0.294) TCGA-CG-4465-01 19 51563198 51563198 T C KLK13 Missense_Mutation p.Q131R 0.08 tolerated(0.81) benign(0.06) TCGA-CG-4465-01 19 53057635 53057635 G A ZNF808 Missense_Mutation p.R489H 0.34 deleterious(0.03) benign(0) TCGA-CG-4465-01 19 53209310 53209310 T C ZNF611 Missense_Mutation p.D333G 0.30 deleterious(0) benign(0.034) TCGA-CG-4465-01 19 54609301 54609301 C T NDUFA3 Missense_Mutation p.T49M 0.29 tolerated(0.15) benign(0.016) TCGA-CG-4465-01 19 56701679 56701680 - G ZSCAN5B Frame_Shift_Ins p.G336Rfs*23 0.31 TCGA-CG-4465-01 19 58384908 58384908 C T ZNF814 Missense_Mutation p.R617H 0.22 tolerated(0.13) benign(0.083) TCGA-CG-4465-01 19 58982366 58982366 C T ZNF324 Silent p.P169P 0.35 TCGA-CG-4465-01 19 58983128 58983128 G A ZNF324 Silent p.K423K 0.29 TCGA-CG-4465-01 19 6375771 6375771 G A PSPN Silent p.P30P 0.39 TCGA-CG-4465-01 19 7682705 7682705 C T CAMSAP3 Missense_Mutation p.A1198V 0.42 deleterious(0) benign(0.1) TCGA-CG-4465-01 19 7693109 7693109 C T XAB2 Missense_Mutation p.E43K 0.35 tolerated(0.18) benign(0.356) TCGA-CG-4465-01 19 902078 902078 A G R3HDM4 Missense_Mutation p.S42P 0.23 deleterious(0.01) benign(0.005) TCGA-CG-4465-01 19 9452461 9452461 A G ZNF559 Missense_Mutation p.T112A 0.06 deleterious(0.02) benign(0.007) TCGA-CG-4465-01 19 9452553 9452553 C T ZNF559 Silent p.I142I 0.34 TCGA-CG-4465-01 19 9721783 9721783 G A ZNF561 Missense_Mutation p.A185V 0.31 tolerated(0.16) possibly_damaging(0.706) TCGA-CG-4465-01 1 100696362 100696362 T - DBT Frame_Shift_Del p.K120Nfs*6 0.30 TCGA-CG-4465-01 1 100856294 100856294 A G CDC14A Missense_Mutation p.S75G 0.35 tolerated(0.06) benign(0.034) TCGA-CG-4465-01 1 103379199 103379199 A C COL11A1 Silent p.G1342G 0.28 TCGA-CG-4465-01 1 10356694 10356694 G A KIF1B Missense_Mutation p.R565K 0.12 tolerated(1) probably_damaging(0.958) TCGA-CG-4465-01 1 107937799 107937799 C T NTNG1 Missense_Mutation p.T304I 0.31 deleterious(0.01) benign(0.372) TCGA-CG-4465-01 1 109944524 109944524 A - PSMA5 3'UTR 0.30 TCGA-CG-4465-01 1 110302334 110302334 T G EPS8L3 Missense_Mutation p.D74A 0.08 tolerated(0.06) possibly_damaging(0.901) TCGA-CG-4465-01 1 110603359 110603359 G A ALX3 Missense_Mutation p.T343M 0.31 deleterious(0) probably_damaging(0.999) TCGA-CG-4465-01 1 111726093 111726093 A G CEPT1 Missense_Mutation p.M339V 0.33 deleterious(0) possibly_damaging(0.824) TCGA-CG-4465-01 1 115215729 115215729 T - AMPD1 3'UTR 0.36 TCGA-CG-4465-01 1 1290110 1290110 G - MXRA8 Frame_Shift_Del p.R301Gfs*107 0.33 TCGA-CG-4465-01 1 150044231 150044232 - G VPS45 Splice_Site p.X77_splice 0.24 TCGA-CG-4465-01 1 150531794 150531794 G A ADAMTSL4 Missense_Mutation p.R932H 0.31 tolerated(0.22) benign(0.032) TCGA-CG-4465-01 1 152081704 152081704 C T TCHH Missense_Mutation p.R1330H 0.28 unknown(0) TCGA-CG-4465-01 1 152186045 152186045 C G HRNR Missense_Mutation p.R2687P 0.60 unknown(0) TCGA-CG-4465-01 1 153751246 153751246 A G SLC27A3 Missense_Mutation p.K558E 0.32 deleterious(0) probably_damaging(0.998) TCGA-CG-4465-01 1 154245172 154245172 G T HAX1 5'UTR 0.28 TCGA-CG-4465-01 1 154313343 154313343 C T ATP8B2 Missense_Mutation p.R383C 0.31 deleterious(0.01) probably_damaging(0.923) TCGA-CG-4465-01 1 156264188 156264188 T C C1orf85 Missense_Mutation p.R183G 0.31 tolerated(1) benign(0.001) TCGA-CG-4465-01 1 156845323 156845323 C T NTRK1 Silent p.L456L 0.37 TCGA-CG-4465-01 1 156906671 156906671 C T ARHGEF11 Missense_Mutation p.A1523T 0.38 deleterious_low_confidence(0.02) benign(0.027) TCGA-CG-4465-01 1 158152853 158152853 G A CD1D Missense_Mutation p.A265T 0.38 deleterious(0.02) benign(0.289) TCGA-CG-4465-01 1 158449945 158449945 A G OR10R2 Missense_Mutation p.Y93C 0.06 deleterious(0) probably_damaging(1) TCGA-CG-4465-01 1 160137152 160137152 A - ATP1A4 Frame_Shift_Del p.N482Tfs*31 0.16 TCGA-CG-4465-01 1 161047443 161047443 G A PVRL4 Missense_Mutation p.P177L 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-CG-4465-01 1 162749971 162749971 G T DDR2 Missense_Mutation p.D835Y 0.32 deleterious(0) probably_damaging(0.981) TCGA-CG-4465-01 1 16534699 16534699 T C ARHGEF19 Missense_Mutation p.Q145R 0.32 tolerated_low_confidence(0.06) benign(0.075) TCGA-CG-4465-01 1 16727036 16727036 C A SPATA21 Intron 0.27 TCGA-CG-4465-01 1 17030623 17030623 A G ESPNP RNA 0.19 TCGA-CG-4465-01 1 171514739 171514739 A - PRRC2C Frame_Shift_Del p.R1629Efs*31 0.19 TCGA-CG-4465-01 1 171557571 171557571 A G PRRC2C Missense_Mutation p.Y2707C 0.29 probably_damaging(0.998) TCGA-CG-4465-01 1 17313329 17313329 G A ATP13A2 Missense_Mutation p.A1069V 0.32 tolerated(0.36) benign(0.18) TCGA-CG-4465-01 1 173776423 173776423 C T CENPL Silent p.P134P 0.36 TCGA-CG-4465-01 1 175067522 175067522 C T TNN Missense_Mutation p.T637M 0.33 deleterious(0.01) probably_damaging(0.951) TCGA-CG-4465-01 1 176525388 176525388 T A PAPPA2 5'UTR 0.09 TCGA-CG-4465-01 1 178421736 178421736 G A RASAL2 Missense_Mutation p.R653Q 0.30 deleterious(0) probably_damaging(0.992) TCGA-CG-4465-01 1 179304653 179304653 T - SOAT1 Frame_Shift_Del p.F65Lfs*2 0.32 TCGA-CG-4465-01 1 179310198 179310198 T A SOAT1 Missense_Mutation p.F178Y 0.05 deleterious(0) probably_damaging(1) TCGA-CG-4465-01 1 180063485 180063486 - A CEP350 Frame_Shift_Ins p.I2751Nfs*29 0.37 TCGA-CG-4465-01 1 182026670 182026670 G A ZNF648 Missense_Mutation p.A159V 0.33 tolerated(0.08) benign(0.01) TCGA-CG-4465-01 1 196927034 196927034 A C CFHR2 Missense_Mutation p.K148N 0.31 tolerated(0.06) benign(0.02) TCGA-CG-4465-01 1 201358401 201358401 C T LAD1 Silent p.E23E 0.36 TCGA-CG-4465-01 1 201842072 201842072 G A IPO9 Missense_Mutation p.R898H 0.38 deleterious(0) probably_damaging(0.999) TCGA-CG-4465-01 1 202910745 202910745 G A ADIPOR1 Missense_Mutation p.R362C 0.19 deleterious(0.04) possibly_damaging(0.507) TCGA-CG-4465-01 1 204924033 204924033 C - NFASC Frame_Shift_Del p.P165Rfs*12 0.29 TCGA-CG-4465-01 1 205238475 205238475 A C TMCC2 Missense_Mutation p.Q382P 0.27 deleterious(0.01) possibly_damaging(0.753) TCGA-CG-4465-01 1 206667321 206667321 A G IKBKE Missense_Mutation p.E705G 0.25 deleterious(0) possibly_damaging(0.735) TCGA-CG-4465-01 1 209799111 209799111 G T LAMB3 Missense_Mutation p.L620M 0.29 deleterious(0.02) probably_damaging(0.992) TCGA-CG-4465-01 1 209800867 209800867 C T LAMB3 Missense_Mutation p.G449E 0.18 deleterious(0) probably_damaging(0.999) TCGA-CG-4465-01 1 214830442 214830442 A T CENPF Missense_Mutation p.Q2884H 0.33 probably_damaging(0.995) TCGA-CG-4465-01 1 21551931 21551931 G A ECE1 Missense_Mutation p.R618W 0.23 deleterious(0) probably_damaging(1) TCGA-CG-4465-01 1 22155944 22155944 G T HSPG2 Missense_Mutation p.P3975H 0.08 probably_damaging(0.998) TCGA-CG-4465-01 1 22176578 22176578 C T HSPG2 Missense_Mutation p.V2468I 0.33 benign(0.047) TCGA-CG-4465-01 1 223954100 223954100 C T CAPN2 Silent p.I574I 0.14 TCGA-CG-4465-01 1 228109556 228109556 C T WNT9A Missense_Mutation p.G254D 0.13 tolerated(0.21) probably_damaging(0.925) TCGA-CG-4465-01 1 22903024 22903024 C T EPHA8 Silent p.D158D 0.33 TCGA-CG-4465-01 1 233511655 233511655 T - MLK4 Intron 0.30 TCGA-CG-4465-01 1 236721620 236721622 CTC - HEATR1 In_Frame_Del p.E1707del 0.16 TCGA-CG-4465-01 1 236749680 236749680 T C HEATR1 Silent p.S596S 0.34 TCGA-CG-4465-01 1 241904846 241904846 G A WDR64 Silent p.L440L 0.51 TCGA-CG-4465-01 1 243777027 243777027 G T AKT3 Silent p.S214S 0.37 TCGA-CG-4465-01 1 245017628 245017629 - A HNRNPU 3'UTR 0.29 TCGA-CG-4465-01 1 247769130 247769130 C T OR2G3 Silent p.T81T 0.13 TCGA-CG-4465-01 1 247769135 247769135 T G OR2G3 Missense_Mutation p.V83G 0.12 deleterious(0.02) possibly_damaging(0.613) TCGA-CG-4465-01 1 248458597 248458597 C T OR2T12 Missense_Mutation p.C95Y 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-CG-4465-01 1 248550954 248550954 G A OR2T6 Missense_Mutation p.M15I 0.41 tolerated(0.07) benign(0.001) TCGA-CG-4465-01 1 25818035 25818035 C T TMEM57 Silent p.S584S 0.30 TCGA-CG-4465-01 1 26158526 26158526 A G MTFR1L 3'UTR 0.28 TCGA-CG-4465-01 1 27088682 27088682 C - ARID1A Frame_Shift_Del p.Q766Sfs*67 0.30 TCGA-CG-4465-01 1 29632103 29632103 A G PTPRU Intron 0.48 TCGA-CG-4465-01 1 35227149 35227149 C T GJB4 Silent p.R98R 0.19 TCGA-CG-4465-01 1 35250494 35250494 G - GJB3 Frame_Shift_Del p.D46Mfs*222 0.32 TCGA-CG-4465-01 1 3551767 3551767 C T WRAP73 Missense_Mutation p.S232N 0.13 deleterious(0) probably_damaging(0.986) TCGA-CG-4465-01 1 37270641 37270641 C T GRIK3 Missense_Mutation p.V838M 0.27 deleterious(0) possibly_damaging(0.832) TCGA-CG-4465-01 1 40366987 40366987 G - MYCL Frame_Shift_Del p.T71Rfs*69 0.35 TCGA-CG-4465-01 1 41976128 41976128 G A HIVEP3 Silent p.N2405N 0.23 TCGA-CG-4465-01 1 44442008 44442008 G A ATP6V0B Missense_Mutation p.G79R 0.34 deleterious(0.01) probably_damaging(0.967) TCGA-CG-4465-01 1 46660558 46660558 G T POMGNT1 Missense_Mutation p.L204M 0.29 probably_damaging(0.992) TCGA-CG-4465-01 1 47489571 47489571 C T CYP4X1 Nonsense_Mutation p.Q28* 0.34 TCGA-CG-4465-01 1 53122577 53122577 C T FAM159A Silent p.S146S 0.33 TCGA-CG-4465-01 1 53370323 53370323 G A ECHDC2 Missense_Mutation p.P233S 0.21 deleterious(0.03) probably_damaging(0.91) TCGA-CG-4465-01 1 78001620 78001620 C A AK5 Missense_Mutation p.P506H 0.36 tolerated(0.24) benign(0) TCGA-CG-4465-01 1 78041802 78041804 TCA - ZZZ3 In_Frame_Del p.D761del 0.20 TCGA-CG-4465-01 1 8418331 8418331 C T RERE Missense_Mutation p.V1422M 0.44 unknown(0) TCGA-CG-4465-01 1 887854 887854 C T NOC2L Missense_Mutation p.A377T 0.28 deleterious(0.03) possibly_damaging(0.867) TCGA-CG-4465-01 1 899343 899343 G A KLHL17 Missense_Mutation p.A467T 0.28 deleterious(0.03) benign(0.343) TCGA-CG-4465-01 1 92445140 92445140 G A BRDT Silent p.T371T 0.08 TCGA-CG-4465-01 1 93602291 93602291 C T MTF2 Missense_Mutation p.R497W 0.29 deleterious(0.01) possibly_damaging(0.889) TCGA-CG-4465-01 1 94998700 94998700 A - F3 Frame_Shift_Del p.F179Lfs*5 0.11 TCGA-CG-4465-01 1 9784908 9784908 G A PIK3CD Missense_Mutation p.G971R 0.34 deleterious(0) probably_damaging(0.994) TCGA-CG-4465-01 1 980540 980540 G T AGRN Splice_Site p.X752_splice 0.11 TCGA-CG-4465-01 1 9990460 9990460 T - LZIC Frame_Shift_Del p.K190Nfs*16 0.15 TCGA-CG-4465-01 20 13539704 13539704 A G TASP1 Missense_Mutation p.V209A 0.24 tolerated(0.37) benign(0.017) TCGA-CG-4465-01 20 2621797 2621797 G A TMC2 Missense_Mutation p.A841T 0.29 tolerated(0.43) benign(0.003) TCGA-CG-4465-01 20 30155910 30155910 A G HM13 Missense_Mutation p.H355R 0.38 tolerated(0.19) benign(0.076) TCGA-CG-4465-01 20 3210181 3210181 T C SLC4A11 Silent p.Q620Q 0.11 TCGA-CG-4465-01 20 32441471 32441471 C T CHMP4B 3'UTR 0.29 TCGA-CG-4465-01 20 34057798 34057798 C T CEP250 Missense_Mutation p.T312I 0.43 possibly_damaging(0.887) TCGA-CG-4465-01 20 35539626 35539626 A G SAMHD1 Missense_Mutation p.L422P 0.33 deleterious(0) probably_damaging(0.977) TCGA-CG-4465-01 20 39977298 39977299 - G LPIN3 Frame_Shift_Ins p.L113Sfs*15 0.26 TCGA-CG-4465-01 20 43726532 43726532 G A KCNS1 Missense_Mutation p.A294V 0.56 deleterious(0) probably_damaging(0.983) TCGA-CG-4465-01 20 43955989 43955989 C T SDC4 Missense_Mutation p.R171H 0.31 tolerated(0.13) benign(0.262) TCGA-CG-4465-01 20 50221365 50221365 C T ATP9A Missense_Mutation p.E1000K 0.22 tolerated(0.05) benign(0.217) TCGA-CG-4465-01 20 50238695 50238695 C A ATP9A Missense_Mutation p.G678V 0.32 deleterious(0) probably_damaging(0.998) TCGA-CG-4465-01 20 50400983 50400983 C - SALL4 Frame_Shift_Del p.V995Ffs*14 0.34 TCGA-CG-4465-01 20 50769044 50769044 C T ZFP64 Missense_Mutation p.A563T 0.09 tolerated(0.53) benign(0.002) TCGA-CG-4465-01 20 51872444 51872445 - C TSHZ2 Frame_Shift_Ins p.M819Hfs*11 0.30 TCGA-CG-4465-01 20 57428667 57428667 C A GNAS Missense_Mutation p.P116H 0.25 deleterious_low_confidence(0) unknown(0) TCGA-CG-4465-01 20 62562334 62562334 C - DNAJC5 Frame_Shift_Del p.E153Rfs*68 0.29 TCGA-CG-4465-01 21 10906892 10906892 G - TPTE 3'UTR 0.19 TCGA-CG-4465-01 21 10996110 10996110 T G TPTE RNA 0.17 TCGA-CG-4465-01 21 16338330 16338330 T - NRIP1 Frame_Shift_Del p.E729Rfs*5 0.36 TCGA-CG-4465-01 21 22910227 22910227 T C NCAM2 Silent p.I821I 0.07 TCGA-CG-4465-01 21 42540489 42540489 C - BACE2 Frame_Shift_Del p.P102Rfs*25 0.32 TCGA-CG-4465-01 21 46685358 46685358 C T POFUT2 3'UTR 0.09 TCGA-CG-4465-01 22 22724194 22724194 T G IGLV7-46 Silent p.T30T 0.30 TCGA-CG-4465-01 22 24583244 24583244 G A SUSD2 Missense_Mutation p.V573M 0.08 tolerated(0.11) benign(0.067) TCGA-CG-4465-01 22 28196402 28196402 G C MN1 Missense_Mutation p.P44A 0.28 benign(0.001) TCGA-CG-4465-01 22 29182413 29182413 C T CCDC117 3'UTR 0.37 TCGA-CG-4465-01 22 29446744 29446744 C T ZNRF3 Nonsense_Mutation p.R859* 0.43 TCGA-CG-4465-01 22 30221652 30221652 C T ASCC2 Missense_Mutation p.D67N 0.38 tolerated(0.18) benign(0.014) TCGA-CG-4465-01 22 38895455 38895455 C - DDX17 Frame_Shift_Del p.G163Efs*20 0.35 TCGA-CG-4465-01 22 41735150 41735150 C T ZC3H7B Silent p.D257D 0.38 TCGA-CG-4465-01 22 45809402 45809402 C T SMC1B Missense_Mutation p.R16Q 0.15 tolerated(0.08) probably_damaging(0.993) TCGA-CG-4465-01 22 46760471 46760471 G - CELSR1 Frame_Shift_Del p.P2906Rfs*24 0.43 TCGA-CG-4465-01 22 47057337 47057337 C T GRAMD4 Missense_Mutation p.A155V 0.10 tolerated(0.15) benign(0.001) TCGA-CG-4465-01 22 50280283 50280283 C T ZBED4 Silent p.S991S 0.21 TCGA-CG-4465-01 22 50656526 50656526 G A TUBGCP6 Missense_Mutation p.A1730V 0.38 deleterious(0.01) probably_damaging(0.998) TCGA-CG-4465-01 22 50898756 50898756 G - SBF1 Frame_Shift_Del p.S1077Afs*28 0.30 TCGA-CG-4465-01 2 100022484 100022484 G A REV1 Missense_Mutation p.T900I 0.30 tolerated(0.22) benign(0.017) TCGA-CG-4465-01 2 105883890 105883890 C T TGFBRAP1 Missense_Mutation p.A845T 0.35 tolerated(0.23) benign(0.013) TCGA-CG-4465-01 2 109411120 109411120 T C CCDC138 Silent p.L173L 0.25 TCGA-CG-4465-01 2 109527396 109527396 C T EDAR Intron 0.32 TCGA-CG-4465-01 2 111408256 111408256 C A BUB1 Missense_Mutation p.E690D 0.27 tolerated(0.34) benign(0.022) TCGA-CG-4465-01 2 113890461 113890461 C A IL1RN 3'UTR 0.13 TCGA-CG-4465-01 2 121708914 121708914 C - GLI2 Frame_Shift_Del p.H119Tfs*4 0.32 TCGA-CG-4465-01 2 128238676 128238676 T - IWS1 Frame_Shift_Del p.S802Afs*7 0.10 TCGA-CG-4465-01 2 131102231 131102231 C T IMP4 Nonsense_Mutation p.R48* 0.35 TCGA-CG-4465-01 2 131521723 131521723 C T AMER3 Missense_Mutation p.A693V 0.38 tolerated(0.14) benign(0.044) TCGA-CG-4465-01 2 132259072 132259072 C T AC093838.4 RNA 0.25 TCGA-CG-4465-01 2 138030222 138030222 C T THSD7B Missense_Mutation p.P796S 0.19 tolerated(0.1) possibly_damaging(0.803) TCGA-CG-4465-01 2 143742717 143742717 G A KYNU Nonsense_Mutation p.W265* 0.30 TCGA-CG-4465-01 2 148684747 148684747 G A ACVR2A Missense_Mutation p.M482I 0.31 tolerated(0.65) possibly_damaging(0.717) TCGA-CG-4465-01 2 152235983 152235983 A C TNFAIP6 Missense_Mutation p.K257T 0.34 tolerated(0.47) probably_damaging(0.991) TCGA-CG-4465-01 2 155099258 155099258 C T GALNT13 Missense_Mutation p.P176S 0.12 tolerated(0.13) benign(0.002) TCGA-CG-4465-01 2 166166916 166166916 G A SCN2A Missense_Mutation p.V261M 0.33 deleterious(0) probably_damaging(1) TCGA-CG-4465-01 2 167992440 167992440 T G XIRP2 Missense_Mutation p.L144V 0.34 benign(0.103) TCGA-CG-4465-01 2 168102105 168102105 A C XIRP2 Missense_Mutation p.E1401D 0.19 benign(0.024) TCGA-CG-4465-01 2 171572954 171572954 G A SP5 Silent p.A79A 0.19 TCGA-CG-4465-01 2 176965452 176965452 C T HOXD12 Silent p.R259R 0.11 TCGA-CG-4465-01 2 179427391 179427391 G T TTN Missense_Mutation p.T27823N 0.33 TCGA-CG-4465-01 2 179584282 179584282 A G TTN Silent p.S7979S 0.04 TCGA-CG-4465-01 2 183792931 183792931 A G NCKAP1 Silent p.L1038L 0.34 TCGA-CG-4465-01 2 185802457 185802457 T A ZNF804A Silent p.S778S 0.43 TCGA-CG-4465-01 2 196788374 196788374 T - DNAH7 Frame_Shift_Del p.N1257Ifs*11 0.32 TCGA-CG-4465-01 2 200800752 200800752 A G TYW5 Missense_Mutation p.L198P 0.37 deleterious(0) possibly_damaging(0.908) TCGA-CG-4465-01 2 201681935 201681935 G A BZW1 Missense_Mutation p.S202N 0.33 tolerated(0.3) benign(0.08) TCGA-CG-4465-01 2 201784950 201784950 A G ORC2 Silent p.N487N 0.34 TCGA-CG-4465-01 2 202712142 202712142 A G CDK15 Missense_Mutation p.Q297R 0.26 tolerated(1) benign(0.005) TCGA-CG-4465-01 2 203242245 203242245 G A BMPR2 Nonsense_Mutation p.W16* 0.25 TCGA-CG-4465-01 2 203407105 203407105 C T BMPR2 Nonsense_Mutation p.Q450* 0.30 TCGA-CG-4465-01 2 206869417 206869417 G A INO80D Missense_Mutation p.T920M 0.39 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CG-4465-01 2 208994242 208994242 G A CRYGC Missense_Mutation p.R59W 0.34 deleterious(0.05) probably_damaging(0.994) TCGA-CG-4465-01 2 219507069 219507069 C T ZNF142 Silent p.R1390R 0.31 TCGA-CG-4465-01 2 219892428 219892428 G A CCDC108 Missense_Mutation p.P719S 0.33 deleterious(0) probably_damaging(1) TCGA-CG-4465-01 2 220478946 220478946 C - STK11IP Frame_Shift_Del p.Q940Sfs*39 0.26 TCGA-CG-4465-01 2 228118042 228118042 A G COL4A3 Missense_Mutation p.K226E 0.30 possibly_damaging(0.878) TCGA-CG-4465-01 2 228141189 228141189 A G COL4A3 Silent p.P672P 0.29 TCGA-CG-4465-01 2 231328834 231328834 A G SP100 Silent p.E370E 0.06 TCGA-CG-4465-01 2 232263248 232263248 G A B3GNT7 Missense_Mutation p.R273Q 0.34 tolerated(0.26) benign(0.037) TCGA-CG-4465-01 2 233201245 233201245 G T DIS3L2 Missense_Mutation p.A855S 0.33 deleterious(0.01) probably_damaging(0.97) TCGA-CG-4465-01 2 233898990 233898990 G A NEU2 Silent p.T122T 0.18 TCGA-CG-4465-01 2 237272542 237272542 G A IQCA1 Silent p.L584L 0.30 TCGA-CG-4465-01 2 242695175 242695175 G A D2HGDH Intron 0.31 TCGA-CG-4465-01 2 24285969 24285969 C A FKBP1B Silent p.T78T 0.21 TCGA-CG-4465-01 2 27430423 27430423 G A SLC5A6 Silent p.F32F 0.33 TCGA-CG-4465-01 2 27436083 27436083 A - ATRAID Frame_Shift_Del p.V103Wfs*11 0.12 TCGA-CG-4465-01 2 27598769 27598769 C T SNX17 Silent p.R345R 0.36 TCGA-CG-4465-01 2 27803556 27803556 C T C2orf16 Missense_Mutation p.R1373W 0.38 deleterious(0) probably_damaging(0.949) TCGA-CG-4465-01 2 46203609 46203609 C T PRKCE Missense_Mutation p.R152W 0.04 deleterious(0.02) benign(0.387) TCGA-CG-4465-01 2 48914782 48914783 - T LHCGR 3'UTR 0.28 TCGA-CG-4465-01 2 51254914 51254914 C T NRXN1 Silent p.A166A 0.17 TCGA-CG-4465-01 2 54873365 54873365 G A SPTBN1 Missense_Mutation p.R1540H 0.13 deleterious(0.01) benign(0.087) TCGA-CG-4465-01 2 54880747 54880747 T G SPTBN1 Missense_Mutation p.V1860G 0.36 deleterious(0) probably_damaging(0.992) TCGA-CG-4465-01 2 63280040 63280040 C A OTX1 5'UTR 0.14 TCGA-CG-4465-01 2 65243635 65243635 A G SLC1A4 Missense_Mutation p.I288V 0.30 tolerated(0.52) benign(0.003) TCGA-CG-4465-01 2 65540704 65540704 G A SPRED2 Silent p.P396P 0.22 TCGA-CG-4465-01 2 71825835 71825835 C T DYSF Missense_Mutation p.P1239L 0.42 deleterious(0.01) probably_damaging(0.991) TCGA-CG-4465-01 2 72562106 72562106 C T EXOC6B Silent p.T722T 0.04 TCGA-CG-4465-01 2 74513013 74513013 C T SLC4A5 Silent p.E96E 0.63 TCGA-CG-4465-01 2 74718259 74718259 A - TTC31 Frame_Shift_Del p.K185Rfs*74 0.32 TCGA-CG-4465-01 2 80646695 80646695 T C CTNNA2 Missense_Mutation p.V420A 0.12 tolerated(0.09) possibly_damaging(0.8) TCGA-CG-4465-01 2 80835350 80835350 T G CTNNA2 Silent p.L779L 0.36 TCGA-CG-4465-01 2 85617547 85617547 T C ELMOD3 Missense_Mutation p.S368P 0.34 tolerated_low_confidence(1) benign(0) TCGA-CG-4465-01 2 95775728 95775728 T - MRPS5 Frame_Shift_Del p.G113Efs*14 0.30 TCGA-CG-4465-01 2 97526589 97526589 G - SEMA4C Frame_Shift_Del p.P759Lfs*36 0.35 TCGA-CG-4465-01 2 97526833 97526833 C G SEMA4C Missense_Mutation p.V678L 0.31 tolerated(0.33) benign(0.026) TCGA-CG-4465-01 2 98351851 98351851 C T ZAP70 Silent p.A407A 0.13 TCGA-CG-4465-01 2 98392382 98392382 T C TMEM131 Missense_Mutation p.D1415G 0.35 deleterious_low_confidence(0.02) benign(0.007) TCGA-CG-4465-01 3 10074520 10074520 C T FANCD2 Silent p.T23T 0.15 TCGA-CG-4465-01 3 101477203 101477203 C T CEP97 Missense_Mutation p.R585C 0.25 deleterious(0.04) possibly_damaging(0.593) TCGA-CG-4465-01 3 110837775 110837775 T C PVRL3 Missense_Mutation p.Y259H 0.24 tolerated(0.05) possibly_damaging(0.556) TCGA-CG-4465-01 3 114057967 114057967 G - ZBTB20 Frame_Shift_Del p.P704Qfs*31 0.35 TCGA-CG-4465-01 3 119121096 119121096 C T ARHGAP31 Silent p.S499S 0.26 TCGA-CG-4465-01 3 123286614 123286614 G A PTPLB Missense_Mutation p.A96V 0.25 tolerated(0.51) possibly_damaging(0.492) TCGA-CG-4465-01 3 123699354 123699354 A - ROPN1 5'UTR 0.20 TCGA-CG-4465-01 3 128623209 128623210 - T ACAD9 Intron 0.28 TCGA-CG-4465-01 3 129284343 129284343 C T PLXND1 Missense_Mutation p.G1454D 0.33 tolerated(0.11) probably_damaging(0.939) TCGA-CG-4465-01 3 130447425 130447425 C T PIK3R4 Silent p.R563R 0.25 TCGA-CG-4465-01 3 131624148 131624148 C T CPNE4 Missense_Mutation p.C47Y 0.10 deleterious(0) probably_damaging(0.996) TCGA-CG-4465-01 3 134851733 134851733 T G EPHB1 Missense_Mutation p.V380G 0.10 tolerated(0.15) benign(0.232) TCGA-CG-4465-01 3 149678568 149678568 A - RNF13 Frame_Shift_Del p.T277Pfs*29 0.26 TCGA-CG-4465-01 3 169642908 169642908 C T SAMD7 Missense_Mutation p.R92W 0.35 deleterious(0) probably_damaging(0.976) TCGA-CG-4465-01 3 175189442 175189442 C A NAALADL2 Missense_Mutation p.L517I 0.38 deleterious(0) probably_damaging(0.993) TCGA-CG-4465-01 3 180365973 180365973 G C CCDC39 Missense_Mutation p.Q448E 0.25 deleterious(0.04) possibly_damaging(0.525) TCGA-CG-4465-01 3 186449380 186449380 G A KNG1 Missense_Mutation p.R240Q 0.35 tolerated(0.18) benign(0.016) TCGA-CG-4465-01 3 193028483 193028483 A - ATP13A5 Frame_Shift_Del p.F823Lfs*19 0.33 TCGA-CG-4465-01 3 195410688 195410688 G A SDHAP2 RNA 0.15 TCGA-CG-4465-01 3 196199236 196199237 - T RNF168 Frame_Shift_Ins p.N390Kfs*7 0.27 TCGA-CG-4465-01 3 197670673 197670673 G A IQCG Silent p.Y86Y 0.30 TCGA-CG-4465-01 3 30713390 30713390 A G TGFBR2 Missense_Mutation p.T264A 0.36 tolerated(0.11) benign(0.067) TCGA-CG-4465-01 3 32529529 32529529 C A CMTM6 Splice_Site p.X106_splice 0.27 TCGA-CG-4465-01 3 37367468 37367468 A - GOLGA4 Frame_Shift_Del p.V1389Lfs*10 0.40 TCGA-CG-4465-01 3 38035802 38035802 C T VILL Silent p.Y62Y 0.29 TCGA-CG-4465-01 3 39179046 39179046 C T TTC21A Missense_Mutation p.R1181C 0.45 deleterious(0) probably_damaging(0.991) TCGA-CG-4465-01 3 40085751 40085751 C T MYRIP Silent p.C107C 0.28 TCGA-CG-4465-01 3 41607536 41607536 A G ULK4 Missense_Mutation p.M1069T 0.59 deleterious(0) benign(0.266) TCGA-CG-4465-01 3 45077050 45077050 C T CLEC3B Silent p.C81C 0.14 TCGA-CG-4465-01 3 47035496 47035497 - C NBEAL2 Frame_Shift_Ins p.S397Lfs*7 0.21 TCGA-CG-4465-01 3 48636515 48636515 G A UQCRC1 3'UTR 0.15 TCGA-CG-4465-01 3 48789703 48789703 G A PRKAR2A Silent p.R329R 0.36 TCGA-CG-4465-01 3 49412898 49412898 T C RHOA Missense_Mutation p.Y42C 0.53 deleterious(0.01) benign(0.327) TCGA-CG-4465-01 3 49688224 49688224 C - BSN Frame_Shift_Del p.L568Cfs*68 0.11 TCGA-CG-4465-01 3 49719319 49719319 G - APEH Splice_Site p.X509_splice 0.34 TCGA-CG-4465-01 3 50253006 50253006 G A SLC38A3 RNA 0.39 TCGA-CG-4465-01 3 50655080 50655080 G - MAPKAPK3 Frame_Shift_Del p.R31Gfs*9 0.23 TCGA-CG-4465-01 3 51263118 51263118 G A DOCK3 Missense_Mutation p.G431R 0.34 deleterious(0) possibly_damaging(0.585) TCGA-CG-4465-01 3 51392352 51392352 C T DOCK3 Silent p.L1383L 0.12 TCGA-CG-4465-01 3 51430610 51430610 C T RBM15B Missense_Mutation p.R594W 0.31 deleterious(0) benign(0.055) TCGA-CG-4465-01 3 54157605 54157605 C T CACNA2D3 Missense_Mutation p.S63F 0.22 deleterious(0.01) benign(0.401) TCGA-CG-4465-01 3 56600689 56600690 - A CCDC66 Frame_Shift_Ins p.T207Nfs*2 0.26 TCGA-CG-4465-01 3 56658620 56658620 G A FAM208A Missense_Mutation p.A1457V 0.26 deleterious(0) probably_damaging(0.982) TCGA-CG-4465-01 3 58139223 58139223 C T FLNB Silent p.G2194G 0.33 TCGA-CG-4465-01 3 63981463 63981463 G A ATXN7 Silent p.T655T 0.04 TCGA-CG-4465-01 3 64582637 64582637 G A ADAMTS9 Missense_Mutation p.R1350W 0.33 deleterious(0) probably_damaging(0.997) TCGA-CG-4465-01 3 66431997 66431997 G A LRIG1 Silent p.C892C 0.39 TCGA-CG-4465-01 3 97677947 97677947 C T MINA Missense_Mutation p.S210N 0.36 tolerated(0.28) benign(0.167) TCGA-CG-4465-01 4 100451003 100451003 C A C4orf17 Missense_Mutation p.P145H 0.22 deleterious(0) probably_damaging(0.957) TCGA-CG-4465-01 4 101947132 101947132 G A PPP3CA Missense_Mutation p.R486C 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-CG-4465-01 4 110437688 110437688 G A SEC24B Missense_Mutation p.R673H 0.09 deleterious(0) probably_damaging(0.996) TCGA-CG-4465-01 4 114278230 114278230 A - ANK2 Frame_Shift_Del p.D2821Tfs*41 0.13 TCGA-CG-4465-01 4 125591592 125591592 C T ANKRD50 Missense_Mutation p.R947Q 0.25 deleterious(0.01) probably_damaging(0.977) TCGA-CG-4465-01 4 126328090 126328090 G A FAT4 Missense_Mutation p.R1788H 0.31 benign(0.021) TCGA-CG-4465-01 4 147561490 147561490 G A POU4F2 Missense_Mutation p.D254N 0.35 deleterious(0.02) probably_damaging(0.989) TCGA-CG-4465-01 4 151774054 151774054 A - LRBA Frame_Shift_Del p.F936Lfs*12 0.12 TCGA-CG-4465-01 4 158065036 158065036 A G GLRB Missense_Mutation p.T277A 0.13 deleterious(0) probably_damaging(0.994) TCGA-CG-4465-01 4 170912625 170912625 T C MFAP3L Silent p.V378V 0.32 TCGA-CG-4465-01 4 177608669 177608669 T G VEGFC Missense_Mutation p.T273P 0.16 tolerated(0.29) benign(0.001) TCGA-CG-4465-01 4 183673077 183673077 A - TENM3 Frame_Shift_Del p.N1253Mfs*32 0.36 TCGA-CG-4465-01 4 186545527 186545527 T C SORBS2 Silent p.S448S 0.18 TCGA-CG-4465-01 4 189060625 189060625 G A TRIML1 5'UTR 0.36 TCGA-CG-4465-01 4 42403032 42403032 C A SHISA3 Missense_Mutation p.P94H 0.09 deleterious(0) probably_damaging(1) TCGA-CG-4465-01 4 46099285 46099285 T G GABRG1 Silent p.G62G 0.07 TCGA-CG-4465-01 4 53304 53304 C A ZNF595 5'UTR 0.07 TCGA-CG-4465-01 4 53728803 53728803 C T RASL11B Silent p.G43G 0.32 TCGA-CG-4465-01 4 57366808 57366808 G T SRP72 Missense_Mutation p.K595N 0.13 deleterious(0.04) possibly_damaging(0.889) TCGA-CG-4465-01 4 6086667 6086667 A G JAKMIP1 Missense_Mutation p.V287A 0.26 tolerated(0.71) benign(0.002) TCGA-CG-4465-01 4 677115 677115 G T MFSD7 Silent p.T345T 0.13 TCGA-CG-4465-01 4 68547904 68547904 T C UBA6 Silent p.T54T 0.31 TCGA-CG-4465-01 4 69817137 69817137 A - UGT2A3 Frame_Shift_Del p.F114Lfs*4 0.18 TCGA-CG-4465-01 4 71660543 71660546 AAAG - RUFY3 Frame_Shift_Del p.R499Dfs*33 0.38 TCGA-CG-4465-01 4 81791254 81791254 A - C4orf22 Frame_Shift_Del p.R167Dfs*9 0.26 TCGA-CG-4465-01 4 83349475 83349475 C A HNRNPDL Nonsense_Mutation p.G190* 0.36 TCGA-CG-4465-01 4 84026050 84026050 G - PLAC8 Frame_Shift_Del p.P81Lfs*38 0.26 TCGA-CG-4465-01 4 96025645 96025646 - C BMPR1B Frame_Shift_Ins p.R56Pfs*8 0.28 TCGA-CG-4465-01 4 96163632 96163632 G A UNC5C Silent p.C352C 0.26 TCGA-CG-4465-01 5 102309949 102309949 A - PAM Frame_Shift_Del p.K433Rfs*32 0.27 TCGA-CG-4465-01 5 10442330 10442330 G A ROPN1L Silent p.P17P 0.07 TCGA-CG-4465-01 5 112137021 112137021 C T APC Missense_Mutation p.R259W 0.13 benign(0.209) TCGA-CG-4465-01 5 114606950 114606952 CTT - CCDC112 In_Frame_Del p.R431del 0.30 TCGA-CG-4465-01 5 131607852 131607852 C A PDLIM4 Missense_Mutation p.A308E 0.41 tolerated(0.42) benign(0.065) TCGA-CG-4465-01 5 132039275 132039276 - T KIF3A Frame_Shift_Ins p.M422Nfs*6 0.12 TCGA-CG-4465-01 5 133897939 133897939 C T JADE2 Missense_Mutation p.T245M 0.25 deleterious(0) probably_damaging(0.991) TCGA-CG-4465-01 5 133914284 133914284 G A JADE2 Nonsense_Mutation p.W550* 0.26 TCGA-CG-4465-01 5 138282955 138282955 G A SIL1 Missense_Mutation p.R413C 0.38 deleterious(0) benign(0.024) TCGA-CG-4465-01 5 139928919 139928919 T C EIF4EBP3 3'UTR 0.35 TCGA-CG-4465-01 5 140308103 140308103 C A PCDHAC1 Missense_Mutation p.N542K 0.28 deleterious(0.05) benign(0.15) TCGA-CG-4465-01 5 140554245 140554245 C T PCDHB7 Missense_Mutation p.T610M 0.08 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-CG-4465-01 5 140554319 140554319 G A PCDHB7 Missense_Mutation p.A635T 0.11 deleterious_low_confidence(0.03) benign(0.372) TCGA-CG-4465-01 5 140562469 140562469 A C PCDHB16 Missense_Mutation p.N112T 0.32 deleterious_low_confidence(0.04) benign(0.039) TCGA-CG-4465-01 5 140605529 140605529 T C PCDHB14 3'UTR 0.22 TCGA-CG-4465-01 5 146775259 146775259 C A DPYSL3 Missense_Mutation p.R610M 0.25 deleterious(0) probably_damaging(0.995) TCGA-CG-4465-01 5 149501535 149501535 T C PDGFRB Missense_Mutation p.Y751C 0.06 deleterious(0) possibly_damaging(0.881) TCGA-CG-4465-01 5 1501591 1501591 G A LPCAT1 Missense_Mutation p.P88L 0.32 tolerated(0.6) benign(0) TCGA-CG-4465-01 5 150310805 150310805 G T ZNF300P1 RNA 0.19 TCGA-CG-4465-01 5 156566145 156566145 G T MED7 Missense_Mutation p.P100T 0.27 deleterious(0) probably_damaging(0.999) TCGA-CG-4465-01 5 161113276 161113276 T C GABRA6 Missense_Mutation p.F27L 0.31 tolerated(1) benign(0) TCGA-CG-4465-01 5 16694521 16694521 G A MYO10 Silent p.S1253S 0.36 TCGA-CG-4465-01 5 169482374 169482374 C T DOCK2 Missense_Mutation p.P1427S 0.28 tolerated(0.44) benign(0.022) TCGA-CG-4465-01 5 171299942 171299942 C T FBXW11 Missense_Mutation p.R404Q 0.30 deleterious(0.02) possibly_damaging(0.451) TCGA-CG-4465-01 5 173035236 173035236 T G BOD1 3'UTR 0.08 TCGA-CG-4465-01 5 175795967 175795967 C T ARL10 Silent p.V181V 0.34 TCGA-CG-4465-01 5 176675269 176675269 A - NSD1 Frame_Shift_Del p.M1531Cfs*43 0.15 TCGA-CG-4465-01 5 176939616 176939616 G A DDX41 Missense_Mutation p.A477V 0.25 tolerated(0.06) benign(0.129) TCGA-CG-4465-01 5 35867540 35867541 - A IL7R Frame_Shift_Ins p.I121Nfs*8 0.27 TCGA-CG-4465-01 5 38945599 38945599 G A RICTOR Missense_Mutation p.H1543Y 0.29 deleterious(0.02) benign(0.116) TCGA-CG-4465-01 5 5436579 5436579 A G KIAA0947 Missense_Mutation p.I45V 0.67 deleterious(0.01) possibly_damaging(0.678) TCGA-CG-4465-01 5 56233480 56233481 GA - MIER3 Frame_Shift_Del p.Q121Vfs*5 0.33 TCGA-CG-4465-01 5 65081624 65081624 A G NLN Missense_Mutation p.Q282R 0.25 tolerated(0.13) benign(0.003) TCGA-CG-4465-01 5 66084576 66084576 G A MAST4 Missense_Mutation p.R199H 0.14 benign(0.218) TCGA-CG-4465-01 5 71411594 71411594 G T MAP1B Missense_Mutation p.R85L 0.29 unknown(0) TCGA-CG-4465-01 5 71756154 71756154 G - ZNF366 Frame_Shift_Del p.I391Sfs*22 0.24 TCGA-CG-4465-01 5 72469122 72469122 G A TMEM174 Missense_Mutation p.V18I 0.29 tolerated(0.21) benign(0.017) TCGA-CG-4465-01 5 82789716 82789716 T G VCAN Silent p.T238T 0.05 TCGA-CG-4465-01 5 82816658 82816658 A C VCAN Missense_Mutation p.S845R 0.32 tolerated(0.17) benign(0.048) TCGA-CG-4465-01 5 83356138 83356138 T C EDIL3 Missense_Mutation p.D373G 0.31 tolerated(0.14) probably_damaging(1) TCGA-CG-4465-01 5 83360536 83360536 A G EDIL3 Missense_Mutation p.L312P 0.30 deleterious(0) probably_damaging(0.994) TCGA-CG-4465-01 5 89938835 89938835 G T GPR98 Missense_Mutation p.A844S 0.10 benign(0) TCGA-CG-4465-01 5 94731879 94731879 A T FAM81B Missense_Mutation p.K98M 0.36 deleterious(0) probably_damaging(0.91) TCGA-CG-4465-01 5 95768891 95768891 G A PCSK1 5'UTR 0.45 TCGA-CG-4465-01 6 10751370 10751370 C T TMEM14B Silent p.S35S 0.38 TCGA-CG-4465-01 6 110448716 110448716 G A WASF1 Missense_Mutation p.T30I 0.33 deleterious(0) unknown(0) TCGA-CG-4465-01 6 11191046 11191046 C T NEDD9 Silent p.P352P 0.37 TCGA-CG-4465-01 6 114378702 114378702 C T HS3ST5 Missense_Mutation p.D254N 0.35 tolerated(0.19) possibly_damaging(0.857) TCGA-CG-4465-01 6 126359854 126359854 C T TRMT11 Missense_Mutation p.R422W 0.35 deleterious(0.03) benign(0.001) TCGA-CG-4465-01 6 138644821 138644821 A T KIAA1244 Missense_Mutation p.T1594S 0.29 tolerated(0.81) benign(0.091) TCGA-CG-4465-01 6 139203986 139203986 T C ECT2L Missense_Mutation p.V669A 0.32 tolerated(0.14) possibly_damaging(0.734) TCGA-CG-4465-01 6 139564337 139564337 C T TXLNB Missense_Mutation p.A461T 0.28 tolerated(0.06) benign(0.201) TCGA-CG-4465-01 6 149068723 149068723 G A UST Missense_Mutation p.A53T 0.36 tolerated_low_confidence(0.11) possibly_damaging(0.461) TCGA-CG-4465-01 6 152466684 152466684 A G SYNE1 Intron 0.21 TCGA-CG-4465-01 6 157511330 157511330 G T ARID1B Missense_Mutation p.G1283V 0.11 probably_damaging(0.951) TCGA-CG-4465-01 6 16328093 16328093 G - ATXN1 Frame_Shift_Del p.P150Qfs*38 0.39 TCGA-CG-4465-01 6 170105213 170105213 T - C6orf120 3'UTR 0.26 TCGA-CG-4465-01 6 17788022 17788023 - T KIF13A Frame_Shift_Ins p.V1116Sfs*4 0.38 TCGA-CG-4465-01 6 25850316 25850316 C A SLC17A3 Missense_Mutation p.K361N 0.31 tolerated(1) benign(0.003) TCGA-CG-4465-01 6 25855394 25855394 C T SLC17A3 Nonsense_Mutation p.W230* 0.32 TCGA-CG-4465-01 6 30671005 30671005 C - MDC1 Frame_Shift_Del p.G1914Efs*57 0.33 TCGA-CG-4465-01 6 31323363 31323363 G - HLA-B Frame_Shift_Del p.P209Qfs*5 0.33 TCGA-CG-4465-01 6 31833683 31833683 A G SLC44A4 Missense_Mutation p.F485S 0.16 deleterious(0.03) probably_damaging(0.965) TCGA-CG-4465-01 6 32169918 32169918 G A NOTCH4 Silent p.H1230H 0.36 TCGA-CG-4465-01 6 32975851 32975851 G A HLA-DOA Silent p.A90A 0.29 TCGA-CG-4465-01 6 33140867 33140867 G T COL11A2 Silent p.P834P 0.13 TCGA-CG-4465-01 6 33152008 33152008 C T COL11A2 Intron 0.36 TCGA-CG-4465-01 6 33632704 33632704 T C ITPR3 Silent p.N402N 0.36 TCGA-CG-4465-01 6 41766584 41766584 C A USP49 Missense_Mutation p.R585M 0.28 deleterious(0.03) possibly_damaging(0.627) TCGA-CG-4465-01 6 42974334 42974334 T C PPP2R5D Missense_Mutation p.I80T 0.27 tolerated(0.29) benign(0.004) TCGA-CG-4465-01 6 43182994 43182994 C T CUL9 Missense_Mutation p.P1956S 0.32 deleterious(0.04) probably_damaging(0.996) TCGA-CG-4465-01 6 43251219 43251219 G A TTBK1 Missense_Mutation p.G914E 0.41 benign(0.348) TCGA-CG-4465-01 6 43473430 43473430 G T TJAP1 Missense_Mutation p.R504M 0.44 tolerated(0.07) benign(0.296) TCGA-CG-4465-01 6 44102354 44102354 C A TMEM63B Silent p.T11T 0.31 TCGA-CG-4465-01 6 50807989 50807989 A C TFAP2B Missense_Mutation p.K354T 0.35 deleterious(0) possibly_damaging(0.824) TCGA-CG-4465-01 6 52878581 52878581 G - ICK Frame_Shift_Del p.P344Lfs*54 0.25 TCGA-CG-4465-01 6 69348994 69348994 A - BAI3 Frame_Shift_Del p.E146Kfs*13 0.30 TCGA-CG-4465-01 6 74528179 74528179 C A CD109 Missense_Mutation p.P1327H 0.29 deleterious(0.01) benign(0.158) TCGA-CG-4465-01 6 7727739 7727739 G A BMP6 Missense_Mutation p.R184H 0.43 tolerated(0.25) benign(0.019) TCGA-CG-4465-01 6 85446536 85446536 G A TBX18 Missense_Mutation p.T564M 0.35 deleterious_low_confidence(0.02) probably_damaging(0.994) TCGA-CG-4465-01 6 89650829 89650829 G T RNGTT Missense_Mutation p.F45L 0.09 deleterious(0) probably_damaging(0.991) TCGA-CG-4465-01 7 100855927 100855927 G - PLOD3 Frame_Shift_Del p.R297Gfs*61 0.24 TCGA-CG-4465-01 7 101892233 101892233 C A CUX1 Missense_Mutation p.R1488S 0.35 deleterious(0) probably_damaging(0.986) TCGA-CG-4465-01 7 112424190 112424191 - A TMEM168 Frame_Shift_Ins p.I231Yfs*6 0.24 TCGA-CG-4465-01 7 113519938 113519938 T C PPP1R3A Silent p.Q403Q 0.26 TCGA-CG-4465-01 7 129029550 129029550 G A AHCYL2 Missense_Mutation p.C232Y 0.28 deleterious(0.02) possibly_damaging(0.79) TCGA-CG-4465-01 7 130357652 130357652 T - TSGA13 Frame_Shift_Del p.K151Sfs*2 0.27 TCGA-CG-4465-01 7 135384207 135384207 G A SLC13A4 Silent p.C267C 0.38 TCGA-CG-4465-01 7 138394386 138394386 G A ATP6V0A4 Silent p.H804H 0.11 TCGA-CG-4465-01 7 138487855 138487855 T A TMEM213 3'UTR 0.23 TCGA-CG-4465-01 7 140273783 140273783 A - DENND2A Frame_Shift_Del p.F424Sfs*18 0.31 TCGA-CG-4465-01 7 140500228 140500228 G A BRAF Missense_Mutation p.A305V 0.29 tolerated(0.37) benign(0.003) TCGA-CG-4465-01 7 142013382 142013382 G T TRBV4-1 Silent p.V79V 0.37 TCGA-CG-4465-01 7 142997472 142997472 G T CASP2 Intron 0.33 TCGA-CG-4465-01 7 151873581 151873581 C T KMT2C Missense_Mutation p.G2986D 0.34 probably_damaging(0.988) TCGA-CG-4465-01 7 158444986 158444986 C T NCAPG2 Missense_Mutation p.R978Q 0.10 tolerated(1) benign(0.001) TCGA-CG-4465-01 7 27868391 27868391 G A TAX1BP1 Silent p.Q771Q 0.28 TCGA-CG-4465-01 7 33136933 33136933 C T RP9 Missense_Mutation p.E119K 0.29 deleterious(0) possibly_damaging(0.801) TCGA-CG-4465-01 7 37355558 37355559 - T ELMO1 Frame_Shift_Ins p.P29Tfs*11 0.19 TCGA-CG-4465-01 7 45957023 45957023 G T IGFBP3 Nonsense_Mutation p.S146* 0.19 TCGA-CG-4465-01 7 53104076 53104076 C T POM121L12 Missense_Mutation p.P238S 0.21 tolerated(0.06) possibly_damaging(0.82) TCGA-CG-4465-01 7 5781027 5781027 C A RNF216 Missense_Mutation p.E207D 0.33 tolerated_low_confidence(0.29) benign(0.013) TCGA-CG-4465-01 7 6180573 6180573 A G USP42 Silent p.S251S 0.30 TCGA-CG-4465-01 7 63726383 63726383 A G ZNF679 Silent p.Q124Q 0.07 TCGA-CG-4465-01 7 65220599 65220599 A G SNORA22 RNA 0.12 TCGA-CG-4465-01 7 72992829 72992829 C T TBL2 Silent p.G17G 0.15 TCGA-CG-4465-01 7 7613797 7613797 G A MIOS Missense_Mutation p.G455R 0.38 deleterious(0) probably_damaging(0.983) TCGA-CG-4465-01 7 81588672 81588672 A G CACNA2D1 Silent p.S1026S 0.30 TCGA-CG-4465-01 7 84649614 84649614 C T SEMA3D Missense_Mutation p.V480I 0.35 tolerated(1) benign(0.017) TCGA-CG-4465-01 7 89939466 89939466 A - C7orf63 Frame_Shift_Del p.K915Nfs*12 0.34 TCGA-CG-4465-01 7 94539504 94539504 T - PPP1R9A Frame_Shift_Del p.Q28Rfs*3 0.24 TCGA-CG-4465-01 7 96651523 96651523 C T DLX5 Missense_Mutation p.A172T 0.13 deleterious(0.04) benign(0.31) TCGA-CG-4465-01 7 98655080 98655080 G A SMURF1 Silent p.L100L 0.27 TCGA-CG-4465-01 7 99917575 99917575 C T SPDYE3 Missense_Mutation p.H538Y 0.49 tolerated(0.37) possibly_damaging(0.774) TCGA-CG-4465-01 8 10584155 10584155 G A SOX7 Missense_Mutation p.T139M 0.37 deleterious(0) possibly_damaging(0.904) TCGA-CG-4465-01 8 120844733 120844733 C T TAF2 Silent p.R24R 0.22 TCGA-CG-4465-01 8 130765066 130765066 T C GSDMC Missense_Mutation p.E241G 0.42 tolerated(0.43) benign(0.008) TCGA-CG-4465-01 8 132002705 132002705 T C ADCY8 Silent p.Q348Q 0.26 TCGA-CG-4465-01 8 133894712 133894712 A G TG Splice_Site p.X249_splice 0.32 TCGA-CG-4465-01 8 140715170 140715170 G A KCNK9 Silent p.G22G 0.19 TCGA-CG-4465-01 8 144663432 144663432 T C EEF1D Missense_Mutation p.S452G 0.34 tolerated(0.09) benign(0.002) TCGA-CG-4465-01 8 144990831 144990831 G C PLEC Silent p.R4523R 0.38 TCGA-CG-4465-01 8 145003686 145003686 G A PLEC Missense_Mutation p.R1130W 0.29 unknown(0) TCGA-CG-4465-01 8 145620377 145620377 G - CPSF1 Frame_Shift_Del p.Q1070Sfs*31 0.32 TCGA-CG-4465-01 8 145746833 145746833 C T LRRC14 Nonsense_Mutation p.R485* 0.31 TCGA-CG-4465-01 8 15621739 15621740 - T TUSC3 3'UTR 0.35 TCGA-CG-4465-01 8 21980053 21980053 A G HR Missense_Mutation p.C692R 0.16 deleterious(0) probably_damaging(0.999) TCGA-CG-4465-01 8 21996021 21996021 C T REEP4 Silent p.V251V 0.30 TCGA-CG-4465-01 8 26228024 26228024 G A PPP2R2A 3'UTR 0.27 TCGA-CG-4465-01 8 30402104 30402104 C T RBPMS Missense_Mutation p.P164L 0.35 deleterious(0.03) benign(0.139) TCGA-CG-4465-01 8 48815306 48815306 C T PRKDC Missense_Mutation p.R1031Q 0.28 benign(0.022) TCGA-CG-4465-01 8 48845618 48845618 C - PRKDC Frame_Shift_Del p.D580Ifs*23 0.45 TCGA-CG-4465-01 8 57026480 57026480 G A MOS Missense_Mutation p.A21V 0.19 tolerated(1) benign(0.057) TCGA-CG-4465-01 8 6302639 6302639 A - MCPH1 Frame_Shift_Del p.T468Pfs*32 0.29 TCGA-CG-4465-01 8 65528338 65528338 A C CYP7B1 Missense_Mutation p.L254V 0.32 tolerated(0.07) benign(0.21) TCGA-CG-4465-01 8 70617403 70617403 T - SLCO5A1 Frame_Shift_Del p.K495Nfs*2 0.30 TCGA-CG-4465-01 8 72756294 72756294 C T MSC Silent p.S40S 0.33 TCGA-CG-4465-01 8 7718335 7718335 G A SPAG11A Intron 0.36 TCGA-CG-4465-01 8 77775680 77775680 C T ZFHX4 Nonsense_Mutation p.Q3244* 0.36 TCGA-CG-4465-01 8 88885305 88885305 A C DCAF4L2 Missense_Mutation p.L299V 0.07 tolerated(0.24) benign(0.021) TCGA-CG-4465-01 8 95952350 95952350 C T TP53INP1 Missense_Mutation p.A71T 0.06 tolerated(0.62) benign(0.007) TCGA-CG-4465-01 8 97172784 97172784 C T GDF6 Missense_Mutation p.R46H 0.35 tolerated(0.12) probably_damaging(0.974) TCGA-CG-4465-01 8 98703359 98703359 A G MTDH Missense_Mutation p.T331A 0.30 tolerated(1) benign(0) TCGA-CG-4465-01 9 100367776 100367776 G T TSTD2 Missense_Mutation p.L368I 0.29 deleterious(0.03) benign(0.424) TCGA-CG-4465-01 9 100892136 100892136 C T CORO2A Missense_Mutation p.D303N 0.27 tolerated(0.05) benign(0.013) TCGA-CG-4465-01 9 101014129 101014129 G A TBC1D2 Missense_Mutation p.A150V 0.34 tolerated(0.18) benign(0.014) TCGA-CG-4465-01 9 111617137 111617137 C T ACTL7B Silent p.E358E 0.41 TCGA-CG-4465-01 9 117168749 117168749 G A DFNB31 Missense_Mutation p.P708S 0.16 tolerated(0.25) benign(0.009) TCGA-CG-4465-01 9 118974189 118974189 C G PAPPA Nonsense_Mutation p.Y632* 0.30 TCGA-CG-4465-01 9 121929790 121929790 G A BRINP1 Missense_Mutation p.R620C 0.34 deleterious(0) probably_damaging(0.973) TCGA-CG-4465-01 9 125552005 125552005 G A OR5C1 Missense_Mutation p.R265H 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-CG-4465-01 9 129377719 129377719 G T LMX1B Missense_Mutation p.R66L 0.30 deleterious(0) probably_damaging(0.999) TCGA-CG-4465-01 9 129458217 129458217 G A LMX1B Missense_Mutation p.S340N 0.38 tolerated(0.28) possibly_damaging(0.682) TCGA-CG-4465-01 9 130495689 130495689 G A TOR2A Missense_Mutation p.R190C 0.33 deleterious(0) probably_damaging(1) TCGA-CG-4465-01 9 13168535 13168535 G T MPDZ Silent p.G1028G 0.29 TCGA-CG-4465-01 9 131771011 131771011 G A SH3GLB2 Silent p.G380G 0.33 TCGA-CG-4465-01 9 132591762 132591762 G A C9orf78 Nonsense_Mutation p.Q201* 0.29 TCGA-CG-4465-01 9 135277489 135277489 C T TTF1 Silent p.S240S 0.39 TCGA-CG-4465-01 9 137681048 137681048 C T COL5A1 Silent p.G898G 0.26 TCGA-CG-4465-01 9 139412368 139412368 G A NOTCH1 Missense_Mutation p.A426V 0.32 tolerated(0.13) probably_damaging(0.964) TCGA-CG-4465-01 9 139836005 139836005 G T FBXW5 Missense_Mutation p.L410M 0.41 deleterious(0) probably_damaging(0.999) TCGA-CG-4465-01 9 139877868 139877868 T C LCNL1 5'UTR 0.39 TCGA-CG-4465-01 9 140161524 140161524 C T NELFB Silent p.P408P 0.36 TCGA-CG-4465-01 9 140449886 140449886 G A DPH7 Silent p.G388G 0.44 TCGA-CG-4465-01 9 140772606 140772606 C T CACNA1B Missense_Mutation p.S74L 0.17 deleterious(0.01) benign(0.007) TCGA-CG-4465-01 9 17332676 17332676 T C CNTLN Missense_Mutation p.L531P 0.28 deleterious(0.03) probably_damaging(0.999) TCGA-CG-4465-01 9 35295726 35295726 G A UNC13B Missense_Mutation p.R187Q 0.34 deleterious_low_confidence(0.03) benign(0.342) TCGA-CG-4465-01 9 35609504 35609504 G A TESK1 Missense_Mutation p.R549Q 0.13 tolerated(0.62) benign(0.028) TCGA-CG-4465-01 9 38395794 38395794 G A ALDH1B1 Missense_Mutation p.A17T 0.30 tolerated(0.4) benign(0) TCGA-CG-4465-01 9 88247586 88247586 C A AGTPBP1 Missense_Mutation p.G629V 0.27 deleterious(0) probably_damaging(0.999) TCGA-CG-4465-01 9 96097655 96097655 C T C9orf129 Splice_Site p.X122_splice 0.29 TCGA-CG-4465-01 X 100513355 100513355 A G DRP2 Silent p.A816A 0.29 TCGA-CG-4465-01 X 101396280 101396281 - T TCEAL6 Frame_Shift_Ins p.N8Kfs*2 0.26 TCGA-CG-4465-01 X 101969939 101969939 G A GPRASP2 Missense_Mutation p.A48T 0.17 tolerated(0.05) possibly_damaging(0.498) TCGA-CG-4465-01 X 102335077 102335077 T C NXF3 Missense_Mutation p.K332R 0.33 deleterious(0.03) benign(0.048) TCGA-CG-4465-01 X 103216754 103216754 C T TMSB15B 5'Flank 0.37 TCGA-CG-4465-01 X 103220212 103220212 T - TMSB15B 3'UTR 0.28 TCGA-CG-4465-01 X 107018613 107018613 C T TSC22D3 Missense_Mutation p.G13S 0.42 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CG-4465-01 X 107417676 107417676 T C COL4A6 Silent p.G1045G 0.04 TCGA-CG-4465-01 X 114883835 114883835 T C PLS3 Missense_Mutation p.M616T 0.03 deleterious(0) probably_damaging(0.995) TCGA-CG-4465-01 X 118370319 118370319 C G PGRMC1 5'UTR 0.27 TCGA-CG-4465-01 X 118699280 118699280 G C CXorf56 Missense_Mutation p.D13E 0.32 deleterious(0) probably_damaging(0.999) TCGA-CG-4465-01 X 119504684 119504684 G T ATP1B4 Missense_Mutation p.R148L 0.26 deleterious(0) possibly_damaging(0.878) TCGA-CG-4465-01 X 125686358 125686358 G A DCAF12L1 Silent p.Y78Y 0.33 TCGA-CG-4465-01 X 125686641 125686641 C T DCAF12L1 5'UTR 0.37 TCGA-CG-4465-01 X 127185759 127185759 C T ACTRT1 Missense_Mutation p.A143T 0.26 deleterious(0.01) probably_damaging(0.945) TCGA-CG-4465-01 X 132092270 132092270 C T HS6ST2 Missense_Mutation p.A121T 0.45 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-CG-4465-01 X 140984487 140984487 C T MAGEC3 Intron 0.30 TCGA-CG-4465-01 X 144904206 144904206 C T SLITRK2 Missense_Mutation p.A88V 0.26 tolerated(0.42) benign(0.029) TCGA-CG-4465-01 X 148037360 148037360 A G AFF2 Silent p.K595K 0.28 TCGA-CG-4465-01 X 1522152 1522152 T C ASMTL 3'UTR 0.15 TCGA-CG-4465-01 X 152818542 152818542 C T ATP2B3 Missense_Mutation p.R625W 0.11 deleterious(0) probably_damaging(0.992) TCGA-CG-4465-01 X 152938109 152938109 C T PNCK Missense_Mutation p.A121T 0.13 deleterious(0.03) benign(0.007) TCGA-CG-4465-01 X 153577261 153577261 C - FLNA Frame_Shift_Del p.D2634Tfs*71 0.39 TCGA-CG-4465-01 X 153698447 153698447 C T PLXNA3 Silent p.R1641R 0.33 TCGA-CG-4465-01 X 154128211 154128211 T C F8 Missense_Mutation p.K2068R 0.12 tolerated(0.4) benign(0.253) TCGA-CG-4465-01 X 154194366 154194366 T A F8 Missense_Mutation p.K441M 0.25 deleterious(0) probably_damaging(0.926) TCGA-CG-4465-01 X 154261743 154261743 C T FUNDC2 Missense_Mutation p.R67C 0.35 deleterious(0.04) probably_damaging(0.95) TCGA-CG-4465-01 X 18660220 18660220 G - RS1 Frame_Shift_Del p.I194Sfs*43 0.16 TCGA-CG-4465-01 X 18912406 18912406 C T PHKA2 Silent p.S1151S 0.23 TCGA-CG-4465-01 X 21674117 21674117 A T KLHL34 Missense_Mutation p.L597H 0.35 deleterious(0.01) probably_damaging(0.922) TCGA-CG-4465-01 X 24006015 24006015 T - KLHL15 3'UTR 0.30 TCGA-CG-4465-01 X 24745948 24745948 G A POLA1 Silent p.L521L 0.37 TCGA-CG-4465-01 X 31198546 31198546 A - DMD Frame_Shift_Del p.S3343Lfs*34 0.30 TCGA-CG-4465-01 X 34148626 34148626 G C FAM47A Missense_Mutation p.S590R 0.30 tolerated(0.07) benign(0.158) TCGA-CG-4465-01 X 36122657 36122657 T C CHDC2 Silent p.N298N 0.31 TCGA-CG-4465-01 X 47919908 47919908 T G ZNF630 Missense_Mutation p.K53N 0.28 tolerated(0.07) benign(0.186) TCGA-CG-4465-01 X 48759531 48759531 G A PQBP1 Missense_Mutation p.R105Q 0.26 tolerated(0.48) possibly_damaging(0.788) TCGA-CG-4465-01 X 50130606 50130606 C A DGKK RNA 0.28 TCGA-CG-4465-01 X 53457857 53457857 A G RIBC1 Missense_Mutation p.Q354R 0.28 tolerated(0.17) possibly_damaging(0.876) TCGA-CG-4465-01 X 54259313 54259313 C A WNK3 Missense_Mutation p.R1590I 0.29 deleterious(0) benign(0.131) TCGA-CG-4465-01 X 54521707 54521707 G A FGD1 Silent p.G53G 0.22 TCGA-CG-4465-01 X 55052384 55052384 C - ALAS2 Frame_Shift_Del p.G17Afs*6 0.23 TCGA-CG-4465-01 X 57619559 57619559 C T ZXDB Nonsense_Mutation p.Q360* 0.28 TCGA-CG-4465-01 X 70468355 70468355 C - ZMYM3 Frame_Shift_Del p.G586Afs*4 0.29 TCGA-CG-4465-01 X 71915722 71915722 T C PHKA1 Missense_Mutation p.D97G 0.04 deleterious(0.02) possibly_damaging(0.547) TCGA-CG-4465-01 X 77218306 77218306 T C ATP7A Intron 0.11 TCGA-CG-4465-01 X 77528208 77528208 T C CYSLTR1 3'UTR 0.29 TCGA-CG-4465-01 X 83352796 83352796 A - RPS6KA6 Frame_Shift_Del p.Y613Tfs*25 0.27 TCGA-CG-4465-01 X 84258931 84258931 A G APOOL Missense_Mutation p.R5G 0.27 deleterious(0.01) benign(0.076) TCGA-CG-4465-01 X 85404009 85404009 C T DACH2 Missense_Mutation p.R129W 0.33 deleterious(0) probably_damaging(0.999) TCGA-CG-4465-01 X 86887421 86887421 T C KLHL4 Silent p.H512H 0.34 TCGA-CG-4466-01 10 114171218 114171218 C - ACSL5 Frame_Shift_Del p.G326Efs*3 0.29 TCGA-CG-4466-01 10 120810145 120810145 C G EIF3A Missense_Mutation p.R787S 0.33 deleterious(0) unknown(0) TCGA-CG-4466-01 10 21104607 21104607 T G NEBL Missense_Mutation p.S730R 0.21 tolerated(0.13) probably_damaging(0.986) TCGA-CG-4466-01 10 26500919 26500919 C T MYO3A 3'UTR 0.42 TCGA-CG-4466-01 10 35928888 35928888 G A FZD8 Silent p.V490V 0.20 TCGA-CG-4466-01 10 37482012 37482012 T G ANKRD30A Missense_Mutation p.F789V 0.19 tolerated(0.5) benign(0.001) TCGA-CG-4466-01 10 38652434 38652434 C T HSD17B7P2 RNA 0.58 TCGA-CG-4466-01 10 55626456 55626456 T G PCDH15 Missense_Mutation p.Q1221H 0.38 deleterious(0.01) probably_damaging(0.979) TCGA-CG-4466-01 10 63852409 63852409 G A ARID5B Missense_Mutation p.G1063R 0.41 deleterious(0.01) possibly_damaging(0.633) TCGA-CG-4466-01 10 70248271 70248271 T G SLC25A16 Silent p.V242V 0.47 TCGA-CG-4466-01 10 90708675 90708675 C G ACTA2 Missense_Mutation p.E5Q 0.47 deleterious_low_confidence(0.02) benign(0.381) TCGA-CG-4466-01 10 93683822 93683822 C T BTAF1 5'UTR 0.40 TCGA-CG-4466-01 11 120180199 120180199 G A POU2F3 Silent p.V326V 0.32 TCGA-CG-4466-01 11 123624580 123624580 T C OR6X1 Missense_Mutation p.Y216C 0.36 deleterious(0) probably_damaging(1) TCGA-CG-4466-01 11 20949921 20949921 A G NELL1 Splice_Site p.X299_splice 0.43 TCGA-CG-4466-01 11 48346846 48346846 T G OR4C3 Silent p.S118S 0.07 TCGA-CG-4466-01 11 4967855 4967855 A C OR51A4 Missense_Mutation p.L159R 0.15 deleterious(0) probably_damaging(0.972) TCGA-CG-4466-01 11 5153446 5153446 A C OR52A5 Missense_Mutation p.L143V 0.49 tolerated(1) benign(0.042) TCGA-CG-4466-01 11 5289717 5289717 C G HBE1 Silent p.L142L 0.38 TCGA-CG-4466-01 11 55658885 55658885 T G TRIM51 Missense_Mutation p.L379R 0.18 deleterious(0) probably_damaging(0.967) TCGA-CG-4466-01 11 55703186 55703186 G A OR5I1 Missense_Mutation p.R231C 0.41 deleterious(0.03) possibly_damaging(0.745) TCGA-CG-4466-01 11 5905963 5905963 T G OR52E4 Silent p.A147A 0.47 TCGA-CG-4466-01 11 65485891 65485891 C A RNASEH2C 3'UTR 0.14 TCGA-CG-4466-01 11 67399229 67399229 C T TBX10 Silent p.P335P 0.60 TCGA-CG-4466-01 11 6942315 6942315 T G OR2D3 Missense_Mutation p.F28C 0.04 deleterious(0) probably_damaging(0.999) TCGA-CG-4466-01 11 6942465 6942465 T G OR2D3 Missense_Mutation p.F78C 0.13 deleterious(0) probably_damaging(0.998) TCGA-CG-4466-01 11 89402649 89402649 T A FOLH1B RNA 0.34 TCGA-CG-4466-01 11 92533693 92533693 T C FAT3 Missense_Mutation p.V2505A 0.20 probably_damaging(0.957) TCGA-CG-4466-01 11 94532886 94532886 G A AMOTL1 Missense_Mutation p.R177Q 0.14 tolerated(0.16) probably_damaging(0.99) TCGA-CG-4466-01 12 109294277 109294277 A C DAO Missense_Mutation p.K337T 0.43 deleterious(0.02) benign(0.012) TCGA-CG-4466-01 12 114397059 114397059 C G RBM19 Missense_Mutation p.G177R 0.13 deleterious(0.01) possibly_damaging(0.563) TCGA-CG-4466-01 12 12967144 12967144 C A DDX47 Missense_Mutation p.P56H 0.17 deleterious(0) probably_damaging(0.999) TCGA-CG-4466-01 12 130884319 130884319 A C RIMBP2 Missense_Mutation p.F1013V 0.44 deleterious(0) probably_damaging(0.997) TCGA-CG-4466-01 12 21033859 21033859 A C SLCO1B3 Missense_Mutation p.S468R 0.10 deleterious(0.05) benign(0.078) TCGA-CG-4466-01 12 21205069 21205069 T G SLCO1B7 Silent p.S410S 0.35 TCGA-CG-4466-01 12 21526276 21526276 T G IAPP 5'UTR 0.16 TCGA-CG-4466-01 12 28122645 28122647 TTC - PTHLH Intron 0.94 TCGA-CG-4466-01 12 53686075 53686075 C T ESPL1 Missense_Mutation p.P1937L 0.40 deleterious(0.01) benign(0.027) TCGA-CG-4466-01 12 55725817 55725817 T C OR6C3 Silent p.I111I 0.42 TCGA-CG-4466-01 12 70918302 70918302 C G PTPRB Missense_Mutation p.E2192Q 0.22 deleterious(0) probably_damaging(0.962) TCGA-CG-4466-01 12 81283099 81283099 T G LIN7A Missense_Mutation p.E44D 0.22 tolerated(0.28) benign(0.001) TCGA-CG-4466-01 12 90017964 90017964 A G ATP2B1 Missense_Mutation p.V447A 0.44 deleterious(0) probably_damaging(0.994) TCGA-CG-4466-01 12 9070318 9070318 T G PHC1 Missense_Mutation p.S15R 0.13 deleterious(0.02) unknown(0) TCGA-CG-4466-01 12 9162129 9162129 T G KLRG1 Missense_Mutation p.L189R 0.16 deleterious_low_confidence(0) probably_damaging(0.917) TCGA-CG-4466-01 12 94543497 94543497 C G PLXNC1 Silent p.P250P 0.23 TCGA-CG-4466-01 12 9847365 9847365 C T CLEC2D Missense_Mutation p.P185S 0.40 deleterious_low_confidence(0.01) benign(0.15) TCGA-CG-4466-01 12 9907796 9907796 A C CD69 Silent p.S83S 0.19 TCGA-CG-4466-01 13 31803342 31803342 G A B3GALTL Missense_Mutation p.V61I 0.27 tolerated(0.25) benign(0.066) TCGA-CG-4466-01 13 36686298 36686298 T C DCLK1 Missense_Mutation p.K144R 0.21 tolerated(0.21) unknown(0) TCGA-CG-4466-01 13 53624669 53624669 C T OLFM4 Silent p.N432N 0.29 TCGA-CG-4466-01 13 78475270 78475270 A G EDNRB Missense_Mutation p.F382L 0.28 deleterious(0) benign(0.239) TCGA-CG-4466-01 13 78492440 78492440 C T EDNRB Missense_Mutation p.C180Y 0.25 deleterious(0) probably_damaging(0.999) TCGA-CG-4466-01 13 86370123 86370123 C T SLITRK6 Missense_Mutation p.S174N 0.31 tolerated(0.33) benign(0.009) TCGA-CG-4466-01 14 104219502 104219502 G T PPP1R13B Missense_Mutation p.F221L 0.40 tolerated(0.08) possibly_damaging(0.613) TCGA-CG-4466-01 14 39649857 39649857 G A PNN Missense_Mutation p.R315Q 0.40 tolerated_low_confidence(0.82) benign(0.129) TCGA-CG-4466-01 14 47601018 47601018 A C MDGA2 Missense_Mutation p.L275R 0.57 deleterious(0) probably_damaging(0.974) TCGA-CG-4466-01 14 64699876 64699876 G A ESR2 Silent p.S524S 0.23 TCGA-CG-4466-01 14 92471267 92471267 G A TRIP11 Missense_Mutation p.T1018M 0.20 deleterious(0.04) benign(0.161) TCGA-CG-4466-01 14 95089967 95089967 T G SERPINA3 Missense_Mutation p.L363R 0.36 deleterious(0) probably_damaging(0.995) TCGA-CG-4466-01 15 102292995 102292995 C G DNM1P47 RNA 0.19 TCGA-CG-4466-01 15 25928482 25928482 T A ATP10A Missense_Mutation p.N1148I 0.22 deleterious(0) benign(0.001) TCGA-CG-4466-01 15 31295126 31295126 G A TRPM1 Silent p.I1276I 0.65 TCGA-CG-4466-01 15 35814440 35814440 G T DPH6 Intron 0.18 TCGA-CG-4466-01 15 42154357 42154357 G A SPTBN5 Missense_Mutation p.R2507C 0.40 benign(0.023) TCGA-CG-4466-01 15 43019870 43019870 G A CDAN1 Silent p.R1015R 0.88 TCGA-CG-4466-01 15 43815290 43815290 G A MAP1A Missense_Mutation p.R540H 0.50 benign(0.014) TCGA-CG-4466-01 15 49426269 49426269 A C COPS2 Missense_Mutation p.F258C 0.84 deleterious(0) possibly_damaging(0.765) TCGA-CG-4466-01 15 72556894 72556894 A G PARP6 Splice_Site p.X132_splice 0.24 TCGA-CG-4466-01 15 79051742 79051742 G A ADAMTS7 3'UTR 0.17 TCGA-CG-4466-01 15 89401172 89401172 A C ACAN Missense_Mutation p.S1786R 0.31 tolerated(0.07) probably_damaging(0.998) TCGA-CG-4466-01 16 10551372 10551372 G T ATF7IP2 Missense_Mutation p.K446N 0.38 tolerated(0.05) benign(0.01) TCGA-CG-4466-01 16 15705584 15705584 C T KIAA0430 Missense_Mutation p.G1161E 0.17 deleterious(0.02) probably_damaging(1) TCGA-CG-4466-01 16 67918061 67918061 C G EDC4 3'UTR 0.42 TCGA-CG-4466-01 16 78466499 78466499 C G WWOX Silent p.L302L 0.43 TCGA-CG-4466-01 16 87636661 87636661 G A JPH3 5'UTR 0.39 TCGA-CG-4466-01 17 20239322 20239322 T G RN7SL17P 5'Flank 0.19 TCGA-CG-4466-01 17 21731513 21731513 C G UBBP4 Missense_Mutation p.I196M 0.27 deleterious(0.03) probably_damaging(0.941) TCGA-CG-4466-01 17 27944531 27944531 C A CORO6 Missense_Mutation p.G247V 0.42 deleterious(0) benign(0.127) TCGA-CG-4466-01 17 28769455 28769455 A T CPD Missense_Mutation p.Q787L 0.93 deleterious(0.04) possibly_damaging(0.608) TCGA-CG-4466-01 17 37882863 37882863 C T ERBB2 Missense_Mutation p.S974F 0.03 deleterious(0) possibly_damaging(0.457) TCGA-CG-4466-01 17 38950093 38950093 T C KRT28 Missense_Mutation p.D395G 0.94 tolerated(0.06) benign(0.168) TCGA-CG-4466-01 17 6616707 6616707 C T SLC13A5 5'UTR 0.46 TCGA-CG-4466-01 17 70120579 70120579 C A SOX9 3'UTR 0.79 TCGA-CG-4466-01 17 7578475 7578475 G - TP53 Frame_Shift_Del p.P152Rfs*18 0.54 TCGA-CG-4466-01 17 76464876 76464876 C T DNAH17 Silent p.Q2853Q 0.30 TCGA-CG-4466-01 18 34349283 34349283 T A FHOD3 Missense_Mutation p.D1377E 0.26 deleterious(0.02) benign(0.316) TCGA-CG-4466-01 18 39607420 39607420 G A PIK3C3 Missense_Mutation p.E500K 0.28 deleterious(0) probably_damaging(0.981) TCGA-CG-4466-01 19 12738763 12738763 C G ZNF791 Silent p.A140A 0.57 TCGA-CG-4466-01 19 22156121 22156121 T G ZNF208 Missense_Mutation p.K572T 0.22 deleterious(0.01) probably_damaging(0.96) TCGA-CG-4466-01 19 22156323 22156323 C A ZNF208 Missense_Mutation p.A505S 0.28 tolerated(0.12) unknown(0) TCGA-CG-4466-01 19 30934928 30934928 G A ZNF536 Silent p.T153T 0.28 TCGA-CG-4466-01 19 39066574 39066574 C T RYR1 Silent p.N4715N 0.56 TCGA-CG-4466-01 19 54251945 54251945 C T MIR521-1 RNA 0.26 TCGA-CG-4466-01 19 55494614 55494614 C A NLRP2 Silent p.T516T 0.81 TCGA-CG-4466-01 19 9089223 9089223 T G MUC16 Missense_Mutation p.E864D 0.59 unknown(0) TCGA-CG-4466-01 19 9449168 9449168 A G ZNF559 Splice_Site 0.38 TCGA-CG-4466-01 1 115527485 115527485 T G SYCP1 Missense_Mutation p.L900R 0.33 deleterious(0) probably_damaging(0.999) TCGA-CG-4466-01 1 115829179 115829179 G A NGF Missense_Mutation p.R80W 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-CG-4466-01 1 152279959 152279959 G C FLG Nonsense_Mutation p.S2468* 0.17 TCGA-CG-4466-01 1 154926160 154926160 A C PBXIP1 Missense_Mutation p.L13R 0.25 deleterious(0) probably_damaging(0.969) TCGA-CG-4466-01 1 155650226 155650230 ATCAG - YY1AP1 Frame_Shift_Del p.L138Gfs*5 0.18 TCGA-CG-4466-01 1 157668284 157668284 T G FCRL3 Missense_Mutation p.K63T 0.31 tolerated(0.56) benign(0.02) TCGA-CG-4466-01 1 158324300 158324300 T C CD1E Silent p.T64T 0.12 TCGA-CG-4466-01 1 158627318 158627318 C A SPTA1 Missense_Mutation p.K918N 0.18 deleterious(0) probably_damaging(0.954) TCGA-CG-4466-01 1 161133410 161133410 G C USP21 Splice_Site p.X372_splice 0.28 TCGA-CG-4466-01 1 169762587 169762587 T G METTL18 Missense_Mutation p.S84R 0.27 tolerated(0.3) benign(0.003) TCGA-CG-4466-01 1 171076927 171076927 G C FMO3 Missense_Mutation p.V145L 0.38 deleterious(0.01) benign(0.259) TCGA-CG-4466-01 1 174418038 174418038 C T GPR52 Silent p.Y263Y 0.33 TCGA-CG-4466-01 1 178269183 178269185 GAG - RASAL2 In_Frame_Del p.R131del 0.16 TCGA-CG-4466-01 1 183908121 183908121 G T COLGALT2 Missense_Mutation p.A552E 0.33 deleterious(0) possibly_damaging(0.582) TCGA-CG-4466-01 1 196642135 196642135 A C CFH Missense_Mutation p.N29T 0.24 tolerated(0.09) benign(0.04) TCGA-CG-4466-01 1 196884189 196884189 C G CFHR4 Missense_Mutation p.C486W 0.22 deleterious(0) possibly_damaging(0.858) TCGA-CG-4466-01 1 198678858 198678858 T G PTPRC Missense_Mutation p.L359R 0.38 deleterious(0.01) benign(0.072) TCGA-CG-4466-01 1 214819369 214819369 T G CENPF Silent p.L2152L 0.33 TCGA-CG-4466-01 1 216420386 216420386 A C USH2A Missense_Mutation p.F784V 0.19 possibly_damaging(0.908) TCGA-CG-4466-01 1 229567787 229567787 G A ACTA1 Silent p.N254N 0.31 TCGA-CG-4466-01 1 234528274 234528274 A G TARBP1 Missense_Mutation p.Y1529H 0.13 deleterious(0) probably_damaging(0.989) TCGA-CG-4466-01 1 240656630 240656630 A T GREM2 Missense_Mutation p.I49N 0.20 tolerated(0.61) benign(0.001) TCGA-CG-4466-01 1 26612350 26612350 G A UBXN11 Silent p.D246D 0.27 TCGA-CG-4466-01 1 32138096 32138096 T C COL16A1 Missense_Mutation p.N1009S 0.25 unknown(0) TCGA-CG-4466-01 1 35824984 35824984 C T ZMYM4 Missense_Mutation p.R182W 0.06 deleterious_low_confidence(0.01) benign(0.425) TCGA-CG-4466-01 1 39800562 39800562 G A MACF1 Intron 0.24 TCGA-CG-4466-01 1 66101927 66101927 T C LEPR Silent p.G909G 0.20 TCGA-CG-4466-01 1 70618204 70618204 C A LRRC40 Missense_Mutation p.V451F 0.16 deleterious(0.01) benign(0.361) TCGA-CG-4466-01 1 71536585 71536585 C T ZRANB2 Missense_Mutation p.R203H 0.23 tolerated(0.05) unknown(0) TCGA-CG-4466-01 1 75596421 75596421 A C LHX8 Intron 0.24 TCGA-CG-4466-01 1 76378529 76378529 A T MSH4 Missense_Mutation p.D923V 0.20 deleterious(0) possibly_damaging(0.628) TCGA-CG-4466-01 1 76779494 76779494 A C ST6GALNAC3 Missense_Mutation p.K8T 0.23 benign(0.023) TCGA-CG-4466-01 1 78097749 78097749 C G ZZZ3 Missense_Mutation p.G431R 0.46 tolerated_low_confidence(0.41) benign(0.007) TCGA-CG-4466-01 1 89271420 89271420 T C PKN2 Intron 0.15 TCGA-CG-4466-01 20 3214855 3214855 C A SLC4A11 Missense_Mutation p.D176Y 0.35 deleterious(0) probably_damaging(0.997) TCGA-CG-4466-01 20 42935377 42935377 C A FITM2 Missense_Mutation p.G226V 0.05 deleterious(0) probably_damaging(0.999) TCGA-CG-4466-01 20 43379120 43379120 G A KCNK15 Missense_Mutation p.E212K 0.10 tolerated(0.19) benign(0.422) TCGA-CG-4466-01 20 44670087 44670087 G A SLC12A5 Missense_Mutation p.R348H 0.36 tolerated(0.13) benign(0.001) TCGA-CG-4466-01 20 50408026 50408026 G A SALL4 Silent p.S332S 0.67 TCGA-CG-4466-01 20 62221495 62221495 G A GMEB2 Missense_Mutation p.H514Y 0.25 deleterious(0.04) benign(0.328) TCGA-CG-4466-01 21 28306878 28306878 C G ADAMTS5 Missense_Mutation p.K532N 0.16 deleterious(0) possibly_damaging(0.733) TCGA-CG-4466-01 22 16448935 16448935 A T OR11H1 Silent p.T290T 0.28 TCGA-CG-4466-01 22 36698672 36698672 C T MYH9 Missense_Mutation p.R814Q 0.21 probably_damaging(0.956) TCGA-CG-4466-01 22 39909637 39909637 G C MIEF1 Missense_Mutation p.R234P 0.26 deleterious(0) probably_damaging(0.992) TCGA-CG-4466-01 22 40055853 40055853 C T CACNA1I Missense_Mutation p.A867V 0.48 deleterious(0) possibly_damaging(0.499) TCGA-CG-4466-01 22 44168845 44168845 C T EFCAB6 Missense_Mutation p.S93N 0.24 tolerated(1) benign(0.006) TCGA-CG-4466-01 22 50278064 50278064 G A ZBED4 Missense_Mutation p.V252M 0.24 tolerated(0.15) benign(0.1) TCGA-CG-4466-01 2 127453545 127453545 G A GYPC Missense_Mutation p.V72I 0.21 tolerated(0.31) benign(0.109) TCGA-CG-4466-01 2 135199405 135199405 G T MGAT5 Missense_Mutation p.C649F 0.26 deleterious(0) probably_damaging(1) TCGA-CG-4466-01 2 135745059 135745059 G A MAP3K19 Silent p.S461S 0.27 TCGA-CG-4466-01 2 141122309 141122309 A G LRP1B Silent p.S3684S 0.51 TCGA-CG-4466-01 2 1499798 1499798 C T TPO Nonsense_Mutation p.Q682* 0.22 TCGA-CG-4466-01 2 160901447 160901447 C T PLA2R1 Missense_Mutation p.V111I 0.41 tolerated(0.42) benign(0.005) TCGA-CG-4466-01 2 163253359 163253359 T G KCNH7 Missense_Mutation p.K835T 0.43 tolerated(0.25) benign(0.1) TCGA-CG-4466-01 2 167992437 167992437 A C XIRP2 Missense_Mutation p.S143R 0.37 possibly_damaging(0.734) TCGA-CG-4466-01 2 168726351 168726351 G T B3GALT1 Missense_Mutation p.V268L 0.51 deleterious(0.05) benign(0.277) TCGA-CG-4466-01 2 175779816 175779816 C T CHN1 Missense_Mutation p.R77Q 0.19 tolerated(0.07) benign(0.012) TCGA-CG-4466-01 2 179478896 179478896 A G TTN Missense_Mutation p.F16410L 0.17 TCGA-CG-4466-01 2 18112836 18112836 C T KCNS3 Silent p.I187I 0.34 TCGA-CG-4466-01 2 186678572 186678576 AAAAA - FSIP2 Frame_Shift_Del p.K6799Ifs*6 0.52 TCGA-CG-4466-01 2 212251753 212251753 A G ERBB4 Silent p.F1102F 0.79 TCGA-CG-4466-01 2 215301358 215301358 T C VWC2L Silent p.S132S 0.61 TCGA-CG-4466-01 2 231313845 231313845 C T SP100 Missense_Mutation p.S189L 0.49 tolerated(0.32) benign(0.009) TCGA-CG-4466-01 2 33585711 33585711 T C LTBP1 Missense_Mutation p.Y1350H 0.48 deleterious(0) probably_damaging(0.977) TCGA-CG-4466-01 2 75061723 75061723 C T HK2 Silent p.L6L 0.27 TCGA-CG-4466-01 2 86839315 86839315 C A RNF103 Missense_Mutation p.R150L 0.19 deleterious(0) probably_damaging(0.997) TCGA-CG-4466-01 2 89278029 89278029 T G IGKV3-7 Missense_Mutation p.E102D 0.19 tolerated(0.14) benign(0.281) TCGA-CG-4466-01 3 121126281 121126281 A C STXBP5L Missense_Mutation p.I951L 0.27 deleterious(0.03) benign(0.058) TCGA-CG-4466-01 3 23996233 23996233 T C NR1D2 Silent p.C74C 0.33 TCGA-CG-4466-01 3 39433036 39433036 C T SLC25A38 Silent p.V127V 0.31 TCGA-CG-4466-01 3 49764884 49764884 T C IP6K1 Missense_Mutation p.S333G 0.24 deleterious(0) probably_damaging(0.998) TCGA-CG-4466-01 3 50231619 50231619 G A GNAT1 Missense_Mutation p.A225T 0.24 tolerated(0.15) probably_damaging(0.985) TCGA-CG-4466-01 3 51980232 51980232 G A PARP3 Nonsense_Mutation p.W390* 0.26 TCGA-CG-4466-01 3 53777132 53777132 C T CACNA1D Missense_Mutation p.S989L 0.48 deleterious(0) probably_damaging(0.995) TCGA-CG-4466-01 3 77600056 77600056 C T ROBO2 Missense_Mutation p.R399C 0.27 deleterious(0.01) possibly_damaging(0.898) TCGA-CG-4466-01 3 81640313 81640313 G A GBE1 Nonsense_Mutation p.Q371* 0.40 TCGA-CG-4466-01 4 109674150 109674150 A C ETNPPL Silent p.T173T 0.26 TCGA-CG-4466-01 4 123813510 123813510 C A FGF2 Missense_Mutation p.Q276K 0.19 deleterious(0.01) probably_damaging(0.995) TCGA-CG-4466-01 4 126370110 126370110 C T FAT4 Missense_Mutation p.P2647S 0.84 probably_damaging(1) TCGA-CG-4466-01 4 134072011 134072011 G A PCDH10 Missense_Mutation p.R239Q 0.33 tolerated(0.47) benign(0.158) TCGA-CG-4466-01 4 154644505 154644505 G T RNF175 Missense_Mutation p.F169L 0.33 tolerated(0.13) benign(0.043) TCGA-CG-4466-01 4 154702901 154702901 T G SFRP2 Missense_Mutation p.K197T 0.29 deleterious(0) probably_damaging(0.997) TCGA-CG-4466-01 4 156651353 156651353 T G GUCY1A3 Missense_Mutation p.N681K 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.484) TCGA-CG-4466-01 4 166243340 166243340 G A KLHL2 3'UTR 0.56 TCGA-CG-4466-01 4 5699368 5699368 G A EVC2 Missense_Mutation p.P79S 0.06 tolerated_low_confidence(0.28) benign(0.033) TCGA-CG-4466-01 4 96123915 96123915 G T UNC5C Silent p.V701V 0.27 TCGA-CG-4466-01 5 102465386 102465386 C G PPIP5K2 Missense_Mutation p.D31E 0.72 tolerated_low_confidence(0.86) benign(0.002) TCGA-CG-4466-01 5 11364954 11364954 T C CTNND2 Missense_Mutation p.E409G 0.10 deleterious(0) benign(0.065) TCGA-CG-4466-01 5 145246082 145246082 G A GRXCR2 Silent p.P182P 0.35 TCGA-CG-4466-01 5 16676142 16676142 T C MYO10 Missense_Mutation p.N1555S 0.13 tolerated(0.71) probably_damaging(0.97) TCGA-CG-4466-01 5 19747287 19747287 C T CDH18 Missense_Mutation p.G96D 0.22 deleterious(0) probably_damaging(1) TCGA-CG-4466-01 5 21783540 21783540 G A CDH12 Silent p.T440T 0.14 TCGA-CG-4466-01 5 33937978 33937978 C T RXFP3 Missense_Mutation p.A378V 0.24 deleterious(0) probably_damaging(0.979) TCGA-CG-4466-01 5 36249553 36249553 T A RANBP3L 3'UTR 0.18 TCGA-CG-4466-01 5 37364386 37364386 T C NUP155 Silent p.R86R 0.10 TCGA-CG-4466-01 5 41061700 41061700 T G MROH2B Missense_Mutation p.K196T 0.23 tolerated(0.22) benign(0.026) TCGA-CG-4466-01 5 41803250 41803250 C G OXCT1 Missense_Mutation p.G324A 0.14 deleterious(0) probably_damaging(0.989) TCGA-CG-4466-01 5 7866882 7866882 G T FASTKD3 Missense_Mutation p.H439N 0.12 tolerated(0.11) benign(0.033) TCGA-CG-4466-01 5 9066715 9066715 T G SEMA5A Missense_Mutation p.K706T 0.13 deleterious(0.01) probably_damaging(0.978) TCGA-CG-4466-01 5 94248669 94248669 T G MCTP1 Missense_Mutation p.S455R 0.82 deleterious(0.02) possibly_damaging(0.843) TCGA-CG-4466-01 6 112671628 112671628 C G RFPL4B Missense_Mutation p.L240V 0.19 deleterious(0.01) benign(0.084) TCGA-CG-4466-01 6 13470336 13470336 A C AL583828.1 Silent p.G59G 0.52 TCGA-CG-4466-01 6 150048162 150048162 A T NUP43 Nonsense_Mutation p.C362* 0.17 TCGA-CG-4466-01 6 150290326 150290326 A G ULBP1 Missense_Mutation p.D152G 0.20 deleterious(0.02) probably_damaging(0.996) TCGA-CG-4466-01 6 152746668 152746668 T G SYNE1 Missense_Mutation p.E1705D 0.27 benign(0.006) TCGA-CG-4466-01 6 165715428 165715428 A G C6orf118 Missense_Mutation p.L128P 0.22 deleterious(0.03) benign(0.379) TCGA-CG-4466-01 6 17292294 17292294 G A RBM24 Missense_Mutation p.A219T 0.28 tolerated(0.41) benign(0.054) TCGA-CG-4466-01 6 55039587 55039587 G A HCRTR2 Missense_Mutation p.A68T 0.18 tolerated(0.05) benign(0.025) TCGA-CG-4466-01 6 7585299 7585299 T G DSP Missense_Mutation p.L2602V 0.22 benign(0.002) TCGA-CG-4466-01 7 120907303 120907303 A C CPED1 Missense_Mutation p.T890P 0.33 deleterious(0) possibly_damaging(0.892) TCGA-CG-4466-01 7 123264689 123264689 C A ASB15 Missense_Mutation p.P173H 0.20 tolerated(0.13) probably_damaging(0.927) TCGA-CG-4466-01 7 150718411 150718411 C T ATG9B Missense_Mutation p.R276H 0.38 tolerated(0.57) benign(0.003) TCGA-CG-4466-01 7 56007364 56007364 C G ZNF713 Missense_Mutation p.L320V 0.10 tolerated(0.16) probably_damaging(0.965) TCGA-CG-4466-01 7 56132002 56132002 C T SUMF2 Silent p.L19L 0.70 TCGA-CG-4466-01 7 64378004 64378004 G T ZNF273 Nonsense_Mutation p.E50* 0.14 TCGA-CG-4466-01 7 75889227 75889227 G A SRRM3 Silent p.V113V 0.18 TCGA-CG-4466-01 7 82585678 82585678 T G PCLO Missense_Mutation p.T1531P 0.20 unknown(0) TCGA-CG-4466-01 7 82595388 82595388 T G PCLO Missense_Mutation p.K1239T 0.23 unknown(0) TCGA-CG-4466-01 7 83591046 83591046 C T SEMA3A Missense_Mutation p.E653K 0.22 deleterious(0) probably_damaging(0.993) TCGA-CG-4466-01 7 96251928 96251928 C A RP11-682N22.1 RNA 0.29 TCGA-CG-4466-01 8 105263313 105263313 A C RIMS2 Missense_Mutation p.K1251N 0.22 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-CG-4466-01 8 113256673 113256673 C A CSMD3 Missense_Mutation p.R3451I 0.33 deleterious(0) probably_damaging(0.969) TCGA-CG-4466-01 8 113256738 113256738 A G CSMD3 Silent p.S3429S 0.16 TCGA-CG-4466-01 8 116631435 116631435 C T TRPS1 Missense_Mutation p.R297H 0.38 tolerated_low_confidence(0.21) probably_damaging(0.927) TCGA-CG-4466-01 8 119122980 119122981 - GACT EXT1 Frame_Shift_Ins p.C103Vfs*87 0.19 TCGA-CG-4466-01 8 120814048 120814048 G A TAF2 Missense_Mutation p.P260S 0.28 deleterious(0.03) probably_damaging(0.996) TCGA-CG-4466-01 8 13356670 13356670 T G DLC1 Missense_Mutation p.N304T 0.21 tolerated_low_confidence(0.12) possibly_damaging(0.66) TCGA-CG-4466-01 8 143562905 143562905 C T BAI1 Nonsense_Mutation p.R655* 0.38 TCGA-CG-4466-01 8 145806488 145806488 G C ARHGAP39 Missense_Mutation p.A85G 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-CG-4466-01 8 15967495 15967495 T G MSR1 3'UTR 0.40 TCGA-CG-4466-01 8 25161874 25161874 T A DOCK5 Intron 0.44 TCGA-CG-4466-01 8 30407071 30407071 G C RBPMS 3'Flank 0.40 TCGA-CG-4466-01 8 38139039 38139039 G T WHSC1L1 Silent p.I1188I 0.26 TCGA-CG-4466-01 8 55540434 55540434 A T RP1 Missense_Mutation p.E1331V 0.20 deleterious(0) possibly_damaging(0.836) TCGA-CG-4466-01 8 72971670 72971670 A T TRPA1 Silent p.A316A 0.21 TCGA-CG-4466-01 8 79645917 79645917 T G IL7 3'UTR 0.15 TCGA-CG-4466-01 8 91963378 91963378 A C NECAB1 Missense_Mutation p.S326R 0.15 tolerated(0.35) possibly_damaging(0.69) TCGA-CG-4466-01 9 107289029 107289029 G T OR13C4 Silent p.I154I 0.17 TCGA-CG-4466-01 9 112918660 112918660 T G PALM2-AKAP2 Silent p.P1019P 0.05 TCGA-CG-4466-01 9 116151291 116151291 G C ALAD Silent p.A299A 0.24 TCGA-CG-4466-01 9 120475916 120475916 T C TLR4 Missense_Mutation p.S504P 0.19 deleterious(0) probably_damaging(1) TCGA-CG-4466-01 9 131367582 131367582 C T SPTAN1 Missense_Mutation p.S1291F 0.08 deleterious(0.05) probably_damaging(0.946) TCGA-CG-4466-01 9 131857713 131857713 C T CRAT Missense_Mutation p.R615H 0.08 tolerated(0.07) benign(0.094) TCGA-CG-4466-01 9 134465308 134465308 C T RAPGEF1 Silent p.T776T 0.12 TCGA-CG-4466-01 9 135771557 135771557 C T TSC1 3'UTR 0.46 TCGA-CG-4466-01 9 136199116 136199117 - A SURF6 Frame_Shift_Ins p.K225Nfs*34 0.26 TCGA-CG-4466-01 9 137666757 137666757 A G COL5A1 Missense_Mutation p.K795R 0.12 possibly_damaging(0.472) TCGA-CG-4466-01 9 16436586 16436586 G A BNC2 Nonsense_Mutation p.R536* 0.71 TCGA-CG-4466-01 9 37746840 37746840 C T FRMPD1 3'UTR 0.22 TCGA-CG-4466-01 9 39178353 39178353 A C CNTNAP3 Silent p.S181S 0.23 TCGA-CG-4466-01 9 71628451 71628451 G A PRKACG Silent p.F186F 0.50 TCGA-CG-4466-01 9 95599704 95599704 G A ANKRD19P RNA 0.26 TCGA-CG-4466-01 9 97356064 97356064 G A FBP2 5'UTR 0.31 TCGA-CG-4466-01 X 105281009 105281009 A C SERPINA7 Missense_Mutation p.L14R 0.35 deleterious(0) probably_damaging(0.996) TCGA-CG-4466-01 X 109694940 109694940 A G RGAG1 Silent p.P365P 0.34 TCGA-CG-4466-01 X 142967261 142967261 T - UBE2NL Frame_Shift_Del p.P21Lfs*53 0.53 TCGA-CG-4466-01 X 145075866 145075866 T G MIR890 RNA 0.68 TCGA-CG-4466-01 X 148798201 148798201 T C MAGEA11 Missense_Mutation p.F352S 0.04 deleterious(0.02) possibly_damaging(0.688) TCGA-CG-4466-01 X 150348896 150348896 T G GPR50 Missense_Mutation p.F281V 0.40 deleterious(0.02) benign(0.159) TCGA-CG-4466-01 X 3239959 3239959 T G MXRA5 Missense_Mutation p.K1256T 0.82 tolerated(0.57) benign(0.001) TCGA-CG-4466-01 X 85950029 85950029 A T DACH2 Missense_Mutation p.S260C 0.37 deleterious(0.01) possibly_damaging(0.473) TCGA-CG-4469-01 10 104211268 104211268 A T C10orf95 5'UTR 0.28 TCGA-CG-4469-01 10 116198978 116198978 C A ABLIM1 Missense_Mutation p.R700I 0.36 deleterious(0) benign(0.127) TCGA-CG-4469-01 10 117059546 117059546 A C ATRNL1 Missense_Mutation p.K806N 0.28 tolerated(0.42) benign(0.156) TCGA-CG-4469-01 10 117853305 117853305 C A GFRA1 Missense_Mutation p.S308I 0.35 deleterious(0.01) probably_damaging(0.957) TCGA-CG-4469-01 10 117884933 117884933 C T GFRA1 Missense_Mutation p.R190H 0.34 tolerated(0.05) benign(0.283) TCGA-CG-4469-01 10 127461299 127461299 G A MMP21 Missense_Mutation p.R240W 0.40 tolerated(0.07) benign(0.081) TCGA-CG-4469-01 10 37431029 37431029 A G ANKRD30A Missense_Mutation p.T346A 0.36 tolerated(0.35) possibly_damaging(0.636) TCGA-CG-4469-01 10 37505290 37505290 A C ANKRD30A Missense_Mutation p.K961N 0.38 tolerated(0.08) possibly_damaging(0.788) TCGA-CG-4469-01 10 42831543 42831543 G A RP11-313J2.1 RNA 0.42 TCGA-CG-4469-01 10 44140004 44140004 C G ZNF32 Missense_Mutation p.E106Q 0.19 deleterious(0.02) possibly_damaging(0.903) TCGA-CG-4469-01 10 45798839 45798839 A T OR13A1 3'UTR 0.35 TCGA-CG-4469-01 10 49634068 49634068 C T MAPK8 Missense_Mutation p.P276S 0.34 tolerated(0.08) possibly_damaging(0.846) TCGA-CG-4469-01 10 54048563 54048563 A G PRKG1 Missense_Mutation p.K596R 0.34 tolerated(0.96) benign(0.008) TCGA-CG-4469-01 10 8115807 8115807 T G GATA3 Missense_Mutation p.F386V 0.35 tolerated(0.18) benign(0.117) TCGA-CG-4469-01 10 90733079 90733079 A T ACTA2 Intron 0.35 TCGA-CG-4469-01 10 93011167 93011167 T A PCGF5 Missense_Mutation p.N148K 0.34 tolerated(0.16) benign(0.022) TCGA-CG-4469-01 10 99969330 99969331 TT A R3HCC1L Frame_Shift_Del p.L487Rfs*8 0.32 TCGA-CG-4469-01 11 115102154 115102154 C T CADM1 Missense_Mutation p.E161K 0.32 tolerated(0.65) benign(0.374) TCGA-CG-4469-01 11 117787939 117787939 G A TMPRSS13 Missense_Mutation p.L168F 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-CG-4469-01 11 120097661 120097661 C T OAF Missense_Mutation p.A168V 0.30 deleterious(0.01) possibly_damaging(0.547) TCGA-CG-4469-01 11 120833306 120833306 G A GRIK4 Missense_Mutation p.E728K 0.41 deleterious(0.01) probably_damaging(0.991) TCGA-CG-4469-01 11 122953807 122953807 C G CLMP Missense_Mutation p.R222P 0.65 deleterious(0.02) possibly_damaging(0.726) TCGA-CG-4469-01 11 124134859 124134859 A C OR8G5 Missense_Mutation p.K46T 0.64 deleterious(0) benign(0.094) TCGA-CG-4469-01 11 124180410 124180410 A G OR8D1 Missense_Mutation p.F85L 0.45 deleterious(0.01) benign(0.341) TCGA-CG-4469-01 11 1862752 1862752 C T TNNI2 Missense_Mutation p.R174W 0.34 deleterious(0) probably_damaging(0.999) TCGA-CG-4469-01 11 3249330 3249330 C T MRGPRE Missense_Mutation p.G233S 0.25 tolerated(0.1) probably_damaging(0.998) TCGA-CG-4469-01 11 45869154 45869154 C T CRY2 Missense_Mutation p.P59L 0.22 deleterious(0.02) probably_damaging(0.937) TCGA-CG-4469-01 11 50003778 50003778 T G OR4C12 Missense_Mutation p.K87T 0.41 deleterious_low_confidence(0.02) benign(0.169) TCGA-CG-4469-01 11 5290789 5290789 A C HBE1 Silent p.T70T 0.40 TCGA-CG-4469-01 11 5323134 5323134 A G OR51B4 Missense_Mutation p.F15L 0.29 tolerated(0.1) benign(0.117) TCGA-CG-4469-01 11 55340243 55340243 T G OR4C16 Missense_Mutation p.F214V 0.46 tolerated(0.33) benign(0.02) TCGA-CG-4469-01 11 55595359 55595359 T C OR5L2 Missense_Mutation p.L222P 0.26 deleterious(0) probably_damaging(0.988) TCGA-CG-4469-01 11 55890015 55890015 T G OR8H3 Missense_Mutation p.L56R 0.32 deleterious(0) probably_damaging(0.988) TCGA-CG-4469-01 11 55999981 55999981 A C OR5T2 Silent p.S227S 0.42 TCGA-CG-4469-01 11 56043937 56043937 A C OR5T1 Missense_Mutation p.S275R 0.75 deleterious(0.02) benign(0.337) TCGA-CG-4469-01 11 56086621 56086621 T G OR8K3 Missense_Mutation p.V280G 0.37 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-CG-4469-01 11 56310202 56310202 A G OR5M11 Missense_Mutation p.C178R 0.40 deleterious(0) probably_damaging(0.988) TCGA-CG-4469-01 11 58391663 58391663 T C CNTF Silent p.L91L 0.39 TCGA-CG-4469-01 11 59271453 59271453 C T OR4D11 Silent p.I135I 0.40 TCGA-CG-4469-01 11 6007684 6007684 T C OR52L1 Missense_Mutation p.I159M 0.37 deleterious(0.02) possibly_damaging(0.903) TCGA-CG-4469-01 11 60620847 60620847 C G PTGDR2 Missense_Mutation p.A117P 0.22 deleterious(0.01) probably_damaging(0.993) TCGA-CG-4469-01 11 66192584 66192584 G A NPAS4 Silent p.S741S 0.38 TCGA-CG-4469-01 11 89133448 89133448 T G NOX4 Missense_Mutation p.S316R 0.37 tolerated(0.55) benign(0.005) TCGA-CG-4469-01 12 106461101 106461101 C A NUAK1 Nonsense_Mutation p.E489* 0.37 TCGA-CG-4469-01 12 108169333 108169333 C T ASCL4 Missense_Mutation p.T114M 0.29 deleterious(0) probably_damaging(0.991) TCGA-CG-4469-01 12 108685568 108685568 T G CMKLR1 3'UTR 0.43 TCGA-CG-4469-01 12 110841453 110841453 G A ANAPC7 Missense_Mutation p.P28S 0.52 tolerated_low_confidence(0.39) benign(0.001) TCGA-CG-4469-01 12 111779618 111779618 C T CUX2 Silent p.T1140T 0.35 TCGA-CG-4469-01 12 115112506 115112506 C T TBX3 Missense_Mutation p.V412I 0.28 tolerated(0.19) benign(0.002) TCGA-CG-4469-01 12 125453092 125453092 T A DHX37 Missense_Mutation p.M466L 0.38 tolerated(0.19) benign(0.001) TCGA-CG-4469-01 12 129559097 129559097 T C TMEM132D Missense_Mutation p.N875D 0.39 tolerated(1) benign(0) TCGA-CG-4469-01 12 14765911 14765911 T C GUCY2C 3'UTR 0.26 TCGA-CG-4469-01 12 20874854 20874854 A G SLCO1C1 Missense_Mutation p.S298G 0.41 deleterious(0) possibly_damaging(0.597) TCGA-CG-4469-01 12 20905343 20905343 A C SLCO1C1 Missense_Mutation p.K708T 0.40 deleterious_low_confidence(0.01) possibly_damaging(0.727) TCGA-CG-4469-01 12 23908618 23908618 T C SOX5 Silent p.K174K 0.36 TCGA-CG-4469-01 12 42858713 42858713 A G PRICKLE1 Silent p.L375L 0.32 TCGA-CG-4469-01 12 5021847 5021847 T G KCNA1 Missense_Mutation p.L435V 0.37 tolerated_low_confidence(0.5) benign(0.009) TCGA-CG-4469-01 12 56335328 56335328 C T DGKA Nonsense_Mutation p.R404* 0.41 TCGA-CG-4469-01 12 57113824 57113824 A C NACA Missense_Mutation p.V497G 0.46 tolerated_low_confidence(0.12) benign(0) TCGA-CG-4469-01 12 63954283 63954283 G T DPY19L2 3'UTR 0.21 TCGA-CG-4469-01 12 6933903 6933903 A G GPR162 Missense_Mutation p.Y280C 0.31 deleterious(0) probably_damaging(0.998) TCGA-CG-4469-01 12 72291645 72291645 G A TBC1D15 Missense_Mutation p.M386I 0.37 deleterious(0) possibly_damaging(0.633) TCGA-CG-4469-01 12 73046203 73046203 C G TRHDE Missense_Mutation p.A881G 0.43 deleterious(0.01) probably_damaging(0.921) TCGA-CG-4469-01 12 73046210 73046210 T C TRHDE Silent p.S883S 0.40 TCGA-CG-4469-01 12 75893499 75893499 G T KRR1 3'UTR 0.38 TCGA-CG-4469-01 12 88542204 88542204 G C TMTC3 Missense_Mutation p.D38H 0.32 deleterious(0) probably_damaging(0.993) TCGA-CG-4469-01 13 110862540 110862540 A C COL4A1 Missense_Mutation p.L163R 0.58 unknown(0) TCGA-CG-4469-01 13 23914825 23914825 G A SACS Missense_Mutation p.L1064F 0.56 probably_damaging(0.996) TCGA-CG-4469-01 13 35883675 35883675 A C NBEA Missense_Mutation p.N1950T 0.21 tolerated(0.19) possibly_damaging(0.734) TCGA-CG-4469-01 13 36049356 36049356 A C MAB21L1 Missense_Mutation p.L307R 0.52 deleterious(0) probably_damaging(0.988) TCGA-CG-4469-01 13 38357117 38357117 G T TRPC4 Missense_Mutation p.H118Q 0.52 deleterious(0.01) possibly_damaging(0.726) TCGA-CG-4469-01 13 50589942 50589942 C A KCNRG Missense_Mutation p.P105T 0.11 tolerated(0.07) benign(0.009) TCGA-CG-4469-01 13 84453564 84453564 C T SLITRK1 Silent p.S693S 0.55 TCGA-CG-4469-01 13 84454971 84454971 T C SLITRK1 Silent p.K224K 0.29 TCGA-CG-4469-01 13 88329633 88329633 T C SLITRK5 Missense_Mutation p.S664P 0.46 deleterious(0) probably_damaging(0.997) TCGA-CG-4469-01 13 96230169 96230169 G A CLDN10 Silent p.G196G 0.26 TCGA-CG-4469-01 14 21424360 21424360 C T RNASE2 Nonsense_Mutation p.R144* 0.40 TCGA-CG-4469-01 14 21840058 21840058 G A SUPT16H Missense_Mutation p.A102V 0.44 tolerated(0.12) benign(0.045) TCGA-CG-4469-01 14 22974109 22974109 A T TRAJ36 Missense_Mutation p.N6Y 0.32 unknown(0) TCGA-CG-4469-01 14 31353795 31353795 T C COCH Silent p.F222F 0.42 TCGA-CG-4469-01 14 33292964 33292964 A C AKAP6 Missense_Mutation p.K1982T 0.47 deleterious(0.02) benign(0.004) TCGA-CG-4469-01 14 39746025 39746025 G T CTAGE5 Intron 0.33 TCGA-CG-4469-01 14 47600949 47600949 T G MDGA2 Missense_Mutation p.K298T 0.06 tolerated(0.09) possibly_damaging(0.544) TCGA-CG-4469-01 14 59806819 59806819 C A DAAM1 Missense_Mutation p.L676M 0.33 tolerated(0.15) probably_damaging(0.968) TCGA-CG-4469-01 14 68217598 68217598 T C ZFYVE26 Intron 0.60 TCGA-CG-4469-01 14 69347560 69347560 G A ACTN1 Silent p.I700I 0.38 TCGA-CG-4469-01 14 79117610 79117610 A T NRXN3 Missense_Mutation p.S15C 0.33 deleterious(0) probably_damaging(0.961) TCGA-CG-4469-01 14 86089542 86089542 T G FLRT2 Missense_Mutation p.F562V 0.40 tolerated(0.39) benign(0.145) TCGA-CG-4469-01 15 25222131 25222131 T G SNRPN Silent p.A125A 0.39 TCGA-CG-4469-01 15 25304705 25304706 - A SNORD116-3 3'Flank 0.38 TCGA-CG-4469-01 15 42129382 42129382 C T JMJD7 3'UTR 0.26 TCGA-CG-4469-01 15 43622516 43622516 C T LCMT2 Missense_Mutation p.V58I 0.39 tolerated(0.31) benign(0.123) TCGA-CG-4469-01 15 48063668 48063668 C A SEMA6D Missense_Mutation p.Q970K 0.39 tolerated(0.19) benign(0.248) TCGA-CG-4469-01 15 48435085 48435085 G A MYEF2 3'UTR 0.29 TCGA-CG-4469-01 15 51017499 51017499 G C SPPL2A Missense_Mutation p.P390A 0.44 deleterious(0) probably_damaging(0.993) TCGA-CG-4469-01 15 54308071 54308071 A C UNC13C Missense_Mutation p.I991L 0.14 tolerated_low_confidence(0.08) benign(0.008) TCGA-CG-4469-01 15 54919041 54919041 A G UNC13C Silent p.E2125E 0.32 TCGA-CG-4469-01 15 70959121 70959121 G T UACA Missense_Mutation p.T1301K 0.41 tolerated(0.4) benign(0.197) TCGA-CG-4469-01 15 74367215 74367215 A G GOLGA6A Silent p.N325N 0.42 TCGA-CG-4469-01 15 76073370 76073370 G A RN7SL319P 5'Flank 0.32 TCGA-CG-4469-01 15 83790730 83790730 T G TM6SF1 Silent p.V152V 0.43 TCGA-CG-4469-01 15 84324519 84324519 T G ADAMTSL3 Silent p.A2A 0.37 TCGA-CG-4469-01 15 86124744 86124757 ACCCCAGAGATGAT - AKAP13 Frame_Shift_Del p.P1150Sfs*2 0.26 TCGA-CG-4469-01 15 93015606 93015606 A G C15orf32 Silent p.Q76Q 0.37 TCGA-CG-4469-01 15 99023856 99023856 C A FAM169B Missense_Mutation p.V53F 0.34 deleterious(0) probably_damaging(0.982) TCGA-CG-4469-01 15 99500432 99500432 G A IGF1R Missense_Mutation p.E1289K 0.39 deleterious(0.03) benign(0.07) TCGA-CG-4469-01 16 1797222 1797222 G A MAPK8IP3 Missense_Mutation p.D313N 0.42 tolerated(0.79) benign(0) TCGA-CG-4469-01 16 26147518 26147518 C A HS3ST4 Nonsense_Mutation p.Y440* 0.26 TCGA-CG-4469-01 16 26147533 26147533 A C HS3ST4 Missense_Mutation p.Q445H 0.29 tolerated(0.37) benign(0.16) TCGA-CG-4469-01 16 30750720 30750720 C T SRCAP Missense_Mutation p.T3120I 0.30 unknown(0) TCGA-CG-4469-01 16 56362638 56362638 C T GNAO1 Silent p.G133G 0.37 TCGA-CG-4469-01 16 57735855 57735855 A G CCDC135 Missense_Mutation p.H171R 0.37 tolerated(0.37) benign(0.345) TCGA-CG-4469-01 16 70698105 70698105 G A MTSS1L Silent p.T573T 0.28 TCGA-CG-4469-01 16 76513436 76513436 G A CNTNAP4 Splice_Site p.X555_splice 0.36 TCGA-CG-4469-01 16 80718652 80718652 C A CDYL2 Missense_Mutation p.K133N 0.43 tolerated(0.19) probably_damaging(0.997) TCGA-CG-4469-01 17 11726122 11726122 C T DNAH9 Missense_Mutation p.T3006I 0.62 benign(0.195) TCGA-CG-4469-01 17 21319086 21319086 C T KCNJ12 Silent p.I144I 0.26 TCGA-CG-4469-01 17 33592742 33592742 C T SLFN5 Silent p.T837T 0.39 TCGA-CG-4469-01 17 36707421 36707421 G A SRCIN1 Nonsense_Mutation p.R978* 0.57 TCGA-CG-4469-01 17 37879658 37879658 G A ERBB2 Missense_Mutation p.R678Q 0.36 tolerated(0.19) benign(0.022) TCGA-CG-4469-01 17 39388788 39388788 C A KRTAP9-3 Missense_Mutation p.T12N 0.38 deleterious(0.01) unknown(0) TCGA-CG-4469-01 17 39502714 39502714 C G KRT33A Missense_Mutation p.E361D 0.39 tolerated(0.11) benign(0.157) TCGA-CG-4469-01 17 3974169 3974169 G A ZZEF1 Missense_Mutation p.A1295V 0.04 deleterious(0.03) benign(0.03) TCGA-CG-4469-01 17 42744389 42744389 G A C17orf104 Silent p.K370K 0.49 TCGA-CG-4469-01 17 53237236 53237236 G T STXBP4 Missense_Mutation p.E542D 0.39 tolerated(0.41) benign(0.003) TCGA-CG-4469-01 17 55016467 55016467 A T COIL Missense_Mutation p.S566T 0.31 tolerated(0.6) possibly_damaging(0.571) TCGA-CG-4469-01 17 56438164 56438164 C A RNF43 Nonsense_Mutation p.E277* 0.55 TCGA-CG-4469-01 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.53 TCGA-CG-4469-01 17 79914768 79914768 C T NOTUM Missense_Mutation p.R293H 0.33 deleterious(0.02) probably_damaging(0.98) TCGA-CG-4469-01 18 12724536 12724536 T G PSMG2 Missense_Mutation p.F207C 0.37 deleterious(0) probably_damaging(0.999) TCGA-CG-4469-01 18 14542997 14542997 T C POTEC Missense_Mutation p.D50G 0.06 deleterious_low_confidence(0) possibly_damaging(0.539) TCGA-CG-4469-01 18 21096377 21096377 A G C18orf8 Missense_Mutation p.M215V 0.68 tolerated(0.33) benign(0.004) TCGA-CG-4469-01 18 23772403 23772403 A G PSMA8 3'UTR 0.59 TCGA-CG-4469-01 18 48573594 48573594 G C SMAD4 Missense_Mutation p.A60P 0.57 deleterious(0) probably_damaging(0.961) TCGA-CG-4469-01 18 58039324 58039324 C G MC4R Missense_Mutation p.A87P 0.67 deleterious(0) probably_damaging(0.999) TCGA-CG-4469-01 18 59221915 59221915 C T CDH20 Missense_Mutation p.A798V 0.89 tolerated(0.07) benign(0.023) TCGA-CG-4469-01 18 63489412 63489412 G T CDH7 Nonsense_Mutation p.G241* 0.61 TCGA-CG-4469-01 18 6977733 6977733 G A LAMA1 Missense_Mutation p.A2113V 0.46 deleterious(0) possibly_damaging(0.651) TCGA-CG-4469-01 19 16686793 16686793 C G MED26 3'UTR 0.32 TCGA-CG-4469-01 19 20044880 20044880 A C ZNF93 Missense_Mutation p.E372D 0.38 tolerated(0.08) benign(0.396) TCGA-CG-4469-01 19 22156673 22156673 T C ZNF208 Missense_Mutation p.K388R 0.33 tolerated(0.38) probably_damaging(0.992) TCGA-CG-4469-01 19 22157209 22157209 A C ZNF208 Silent p.A209A 0.34 TCGA-CG-4469-01 19 22836737 22836737 A C ZNF492 Missense_Mutation p.K17T 0.33 deleterious(0.01) possibly_damaging(0.727) TCGA-CG-4469-01 19 35174131 35174131 A T ZNF302 Nonsense_Mutation p.K68* 0.37 TCGA-CG-4469-01 19 3589487 3589487 G A GIPC3 Silent p.A213A 0.38 TCGA-CG-4469-01 19 37413699 37413699 C A ZNF568 Missense_Mutation p.S9R 0.46 tolerated_low_confidence(0.1) benign(0.307) TCGA-CG-4469-01 19 38980888 38980888 G A RYR1 Missense_Mutation p.R1996H 0.33 possibly_damaging(0.78) TCGA-CG-4469-01 19 51135608 51135608 G - SYT3 Frame_Shift_Del p.S204Vfs*35 0.43 TCGA-CG-4469-01 19 51742916 51742916 C T CD33 Silent p.T356T 0.31 TCGA-CG-4469-01 19 51771912 51771912 A T SIGLECL1 3'UTR 0.09 TCGA-CG-4469-01 19 53116874 53116874 T G ZNF83 Missense_Mutation p.K315T 0.39 deleterious(0.01) probably_damaging(0.993) TCGA-CG-4469-01 19 53208189 53208189 T C ZNF611 3'UTR 0.39 TCGA-CG-4469-01 19 54746095 54746095 C T LILRA6 Silent p.E54E 0.26 TCGA-CG-4469-01 19 55175267 55175267 G A LILRB4 Silent p.G42G 0.41 TCGA-CG-4469-01 19 56244335 56244335 G A NLRP9 Missense_Mutation p.R288W 0.36 deleterious(0) possibly_damaging(0.72) TCGA-CG-4469-01 19 57328918 57328918 A T PEG3 Missense_Mutation p.S298T 0.37 deleterious(0.04) benign(0.445) TCGA-CG-4469-01 19 57335020 57335020 T G PEG3 Missense_Mutation p.D141A 0.45 deleterious(0.01) benign(0.335) TCGA-CG-4469-01 19 58198842 58198842 T G ZNF551 Missense_Mutation p.F400C 0.39 deleterious(0) probably_damaging(1) TCGA-CG-4469-01 19 629604 629604 C T POLRMT Missense_Mutation p.R253Q 0.49 tolerated(0.65) benign(0.002) TCGA-CG-4469-01 19 8162226 8162226 C T FBN3 Missense_Mutation p.R1745H 0.23 deleterious(0.05) benign(0.048) TCGA-CG-4469-01 19 8430901 8430901 C T ANGPTL4 Missense_Mutation p.R128W 0.35 tolerated(0.14) probably_damaging(0.959) TCGA-CG-4469-01 19 9452303 9452303 A G ZNF559 Intron 0.45 TCGA-CG-4469-01 1 100964602 100964602 T G CDC14A Missense_Mutation p.F513L 0.37 tolerated_low_confidence(1) benign(0.003) TCGA-CG-4469-01 1 103449730 103449730 T C COL11A1 Silent p.P840P 0.36 TCGA-CG-4469-01 1 113657272 113657272 G A LRIG2 Missense_Mutation p.M768I 0.35 tolerated(0.08) benign(0.241) TCGA-CG-4469-01 1 115151320 115151320 T A DENND2C Missense_Mutation p.Q515L 0.44 deleterious(0) possibly_damaging(0.864) TCGA-CG-4469-01 1 115829283 115829283 T G NGF Missense_Mutation p.D45A 0.39 tolerated(0.19) possibly_damaging(0.804) TCGA-CG-4469-01 1 12416555 12416555 C T VPS13D Silent p.C3324C 0.41 TCGA-CG-4469-01 1 149883463 149883463 C T SV2A Missense_Mutation p.R231Q 0.36 deleterious(0) probably_damaging(1) TCGA-CG-4469-01 1 150936730 150936730 C T SETDB1 Missense_Mutation p.R1256W 0.39 deleterious(0) probably_damaging(0.987) TCGA-CG-4469-01 1 152277527 152277527 C T FLG Missense_Mutation p.A3279T 0.38 unknown(0) TCGA-CG-4469-01 1 153610785 153610785 T G CHTOP Missense_Mutation p.L27R 0.11 tolerated(0.14) possibly_damaging(0.766) TCGA-CG-4469-01 1 158604450 158604450 T C SPTA1 Silent p.E1816E 0.32 TCGA-CG-4469-01 1 158636127 158636127 C G SPTA1 Missense_Mutation p.E733D 0.32 deleterious(0) probably_damaging(0.999) TCGA-CG-4469-01 1 167095768 167095768 G A DUSP27 Missense_Mutation p.R467H 0.44 deleterious(0.02) benign(0.035) TCGA-CG-4469-01 1 169524509 169524509 C A F5 Missense_Mutation p.Q343H 0.47 deleterious(0) probably_damaging(0.999) TCGA-CG-4469-01 1 179414226 179414226 G A AXDND1 Missense_Mutation p.R562Q 0.40 deleterious(0.02) possibly_damaging(0.602) TCGA-CG-4469-01 1 182026551 182026551 A C ZNF648 Missense_Mutation p.W199G 0.05 tolerated(0.08) possibly_damaging(0.69) TCGA-CG-4469-01 1 185958651 185958651 A C HMCN1 Missense_Mutation p.K1027T 0.44 probably_damaging(0.996) TCGA-CG-4469-01 1 196876457 196876457 A C CFHR4 Missense_Mutation p.N209H 0.34 tolerated(0.1) possibly_damaging(0.447) TCGA-CG-4469-01 1 198685942 198685942 A T PTPRC Missense_Mutation p.M475L 0.46 tolerated(0.68) benign(0) TCGA-CG-4469-01 1 201982111 201982112 - CGGTG ELF3 Frame_Shift_Ins p.G214Afs*42 0.42 TCGA-CG-4469-01 1 216258095 216258095 G A USH2A Silent p.N1704N 0.41 TCGA-CG-4469-01 1 237617755 237617755 A C RYR2 Missense_Mutation p.S453R 0.43 possibly_damaging(0.891) TCGA-CG-4469-01 1 24082799 24082799 G A TCEB3 Missense_Mutation p.A696T 0.47 deleterious(0.01) probably_damaging(0.989) TCGA-CG-4469-01 1 247752079 247752079 C T OR2G2 Missense_Mutation p.H140Y 0.39 deleterious(0.01) possibly_damaging(0.783) TCGA-CG-4469-01 1 248201578 248201578 T G OR2L2 Missense_Mutation p.N3K 0.43 tolerated(0.32) benign(0.003) TCGA-CG-4469-01 1 27106412 27106412 T G ARID1A Missense_Mutation p.L2008R 0.76 probably_damaging(0.997) TCGA-CG-4469-01 1 28562926 28562926 G C ATPIF1 Missense_Mutation p.G48R 0.38 deleterious(0) probably_damaging(0.937) TCGA-CG-4469-01 1 3806547 3806547 C T C1orf174 Missense_Mutation p.D237N 0.42 deleterious(0.01) benign(0.131) TCGA-CG-4469-01 1 40092691 40092691 C T HEYL Missense_Mutation p.E159K 0.38 deleterious(0) probably_damaging(0.927) TCGA-CG-4469-01 1 43296699 43296699 G A ERMAP Missense_Mutation p.V116M 0.36 deleterious(0) probably_damaging(0.971) TCGA-CG-4469-01 1 47512210 47512210 C T CYP4X1 Missense_Mutation p.P382L 0.46 deleterious(0.02) benign(0.098) TCGA-CG-4469-01 1 57420479 57420479 A C C8B Missense_Mutation p.L138R 0.36 deleterious(0) probably_damaging(0.996) TCGA-CG-4469-01 1 64114271 64114271 G A PGM1 Missense_Mutation p.E428K 0.35 tolerated(0.12) benign(0.277) TCGA-CG-4469-01 1 66458598 66458599 AA - PDE4B Intron 0.30 TCGA-CG-4469-01 1 7907770 7907771 - A UTS2 3'Flank 0.29 TCGA-CG-4469-01 1 79383608 79383608 T A ELTD1 Missense_Mutation p.H530L 0.35 tolerated(0.13) probably_damaging(1) TCGA-CG-4469-01 1 82456582 82456582 T G LPHN2 Missense_Mutation p.L1322R 0.34 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-CG-4469-01 20 23016664 23016664 G A SSTR4 Missense_Mutation p.A182T 0.28 tolerated(0.28) benign(0.021) TCGA-CG-4469-01 20 31577434 31577434 T G SUN5 Missense_Mutation p.K202T 0.27 deleterious(0) probably_damaging(0.999) TCGA-CG-4469-01 20 34090802 34090802 C A CEP250 Missense_Mutation p.D1535E 0.22 benign(0.062) TCGA-CG-4469-01 21 11098719 11098719 T G BAGE2 RNA 0.13 TCGA-CG-4469-01 21 22782648 22782648 C T NCAM2 Missense_Mutation p.P417L 0.11 deleterious(0.02) benign(0.303) TCGA-CG-4469-01 21 27347535 27347535 G A APP Nonsense_Mutation p.Q436* 0.68 TCGA-CG-4469-01 22 17622071 17622071 G A CECR5 Silent p.I208I 0.10 TCGA-CG-4469-01 22 20456625 20456625 G T RIMBP3 Silent p.L1559L 0.19 TCGA-CG-4469-01 22 21327698 21327698 C T AIFM3 Missense_Mutation p.T45M 0.57 deleterious_low_confidence(0) possibly_damaging(0.717) TCGA-CG-4469-01 22 24581668 24581668 G A SUSD2 Silent p.A370A 0.32 TCGA-CG-4469-01 22 25627692 25627692 C T CRYBB2 Missense_Mutation p.R191C 0.37 deleterious(0) probably_damaging(0.989) TCGA-CG-4469-01 22 40055011 40055011 A C CACNA1I Missense_Mutation p.K740N 0.44 deleterious(0) possibly_damaging(0.728) TCGA-CG-4469-01 22 50307428 50307428 T A ALG12 5'UTR 0.40 TCGA-CG-4469-01 2 100917224 100917224 G C LONRF2 Missense_Mutation p.A316G 0.33 tolerated(0.19) benign(0.13) TCGA-CG-4469-01 2 101885796 101885796 G A CNOT11 Missense_Mutation p.R485Q 0.36 deleterious(0) probably_damaging(0.988) TCGA-CG-4469-01 2 103095555 103095555 G T SLC9A4 Missense_Mutation p.G172C 0.48 deleterious(0.02) probably_damaging(0.992) TCGA-CG-4469-01 2 1271161 1271161 T G SNTG2 Missense_Mutation p.L368V 0.22 deleterious(0.02) benign(0.098) TCGA-CG-4469-01 2 131103621 131103621 G A IMP4 Missense_Mutation p.V209M 0.41 deleterious(0.02) possibly_damaging(0.701) TCGA-CG-4469-01 2 141641574 141641574 T A LRP1B Missense_Mutation p.E1327D 0.37 benign(0.002) TCGA-CG-4469-01 2 144276860 144276860 C G ARHGAP15 Missense_Mutation p.H284Q 0.36 tolerated(0.24) benign(0.001) TCGA-CG-4469-01 2 167060511 167060511 T C SCN9A Silent p.V1565V 0.29 TCGA-CG-4469-01 2 168099123 168099123 G A XIRP2 Silent p.V407V 0.34 TCGA-CG-4469-01 2 179489281 179489281 A G TTN Missense_Mutation p.L14909P 0.35 TCGA-CG-4469-01 2 179498346 179498346 T G TTN Missense_Mutation p.E14247A 0.47 TCGA-CG-4469-01 2 179594182 179594182 T G TTN Missense_Mutation p.K6234T 0.42 TCGA-CG-4469-01 2 179644609 179644609 T G TTN Intron 0.39 TCGA-CG-4469-01 2 179720163 179720163 G T CCDC141 Missense_Mutation p.Q991K 0.34 tolerated(0.2) benign(0.072) TCGA-CG-4469-01 2 179736260 179736260 A C CCDC141 Missense_Mutation p.L700R 0.36 tolerated(0.16) benign(0.099) TCGA-CG-4469-01 2 210557509 210557509 A C MAP2 Missense_Mutation p.K205N 0.34 deleterious_low_confidence(0.03) benign(0.001) TCGA-CG-4469-01 2 210557512 210557512 T G MAP2 Silent p.T206T 0.33 TCGA-CG-4469-01 2 211476868 211476869 GA - CPS1 Frame_Shift_Del p.S814Ffs*28 0.33 TCGA-CG-4469-01 2 212589824 212589824 C T ERBB4 Missense_Mutation p.G240R 0.24 deleterious(0.01) probably_damaging(1) TCGA-CG-4469-01 2 220435229 220435229 C T OBSL1 Silent p.A242A 0.42 TCGA-CG-4469-01 2 29473982 29473982 G A ALK Silent p.T731T 0.48 TCGA-CG-4469-01 2 29754946 29754946 T C ALK Missense_Mutation p.K330R 0.33 tolerated(0.23) benign(0.007) TCGA-CG-4469-01 2 33952778 33952778 C T AC009499.1 Intron 0.40 TCGA-CG-4469-01 2 84518215 84518215 A C FUNDC2P2 RNA 0.40 TCGA-CG-4469-01 2 95815386 95815386 G A ZNF514 Missense_Mutation p.H282Y 0.36 deleterious(0) probably_damaging(0.999) TCGA-CG-4469-01 2 9676896 9676896 C G ADAM17 Missense_Mutation p.V98L 0.41 tolerated(0.24) benign(0.021) TCGA-CG-4469-01 3 121258317 121258317 G A POLQ Silent p.I198I 0.38 TCGA-CG-4469-01 3 121415806 121415806 G C GOLGB1 Silent p.A1188A 0.43 TCGA-CG-4469-01 3 123813649 123813649 G A KALRN 5'UTR 0.41 TCGA-CG-4469-01 3 147114142 147114142 A G ZIC4 Missense_Mutation p.L112P 0.20 tolerated(0.06) possibly_damaging(0.88) TCGA-CG-4469-01 3 151129179 151129179 G A MED12L Silent p.P1973P 0.41 TCGA-CG-4469-01 3 151161049 151161049 A C IGSF10 Missense_Mutation p.L1896V 0.35 tolerated(0.11) probably_damaging(0.921) TCGA-CG-4469-01 3 167245795 167245795 A C WDR49 Missense_Mutation p.L454R 0.30 deleterious(0) possibly_damaging(0.703) TCGA-CG-4469-01 3 174814756 174814756 C G NAALADL2 Missense_Mutation p.L74V 0.39 tolerated(0.45) benign(0.014) TCGA-CG-4469-01 3 179424791 179424791 G A USP13 Missense_Mutation p.E183K 0.47 deleterious(0) benign(0.359) TCGA-CG-4469-01 3 195400778 195400778 C T SDHAP2 RNA 0.44 TCGA-CG-4469-01 3 28562499 28562499 A C ZCWPW2 Missense_Mutation p.E267D 0.35 deleterious(0.03) possibly_damaging(0.628) TCGA-CG-4469-01 3 36898370 36898370 T A TRANK1 Missense_Mutation p.H904L 0.39 deleterious(0) probably_damaging(0.997) TCGA-CG-4469-01 3 41275180 41275180 G - CTNNB1 Frame_Shift_Del p.R449Lfs*23 0.36 TCGA-CG-4469-01 3 42793433 42793433 C A CCDC13 Missense_Mutation p.A200S 0.41 tolerated(0.8) possibly_damaging(0.547) TCGA-CG-4469-01 3 447213 447213 G A CHL1 Missense_Mutation p.R1165Q 0.37 tolerated(0.33) benign(0.126) TCGA-CG-4469-01 3 52404576 52404576 C T DNAH1 Silent p.S2114S 0.50 TCGA-CG-4469-01 3 62216974 62216974 G C PTPRG Missense_Mutation p.E788D 0.33 tolerated_low_confidence(0.18) benign(0.023) TCGA-CG-4469-01 3 62535631 62535631 A C CADPS Missense_Mutation p.L638R 0.37 tolerated(0.2) possibly_damaging(0.766) TCGA-CG-4469-01 3 75986752 75986752 A G ROBO2 Silent p.Q36Q 0.13 TCGA-CG-4469-01 3 97869148 97869148 A T OR5H14 Nonsense_Mutation p.R307* 0.35 TCGA-CG-4469-01 4 119202994 119202995 AG - PRSS12 3'UTR 0.36 TCGA-CG-4469-01 4 126237930 126237930 C T FAT4 Nonsense_Mutation p.R122* 0.30 TCGA-CG-4469-01 4 126336095 126336095 A C FAT4 Missense_Mutation p.T1993P 0.38 benign(0.251) TCGA-CG-4469-01 4 126372808 126372808 A C FAT4 Missense_Mutation p.Y3546S 0.40 probably_damaging(0.962) TCGA-CG-4469-01 4 126411765 126411765 T C FAT4 Silent p.T4596T 0.29 TCGA-CG-4469-01 4 149035392 149035392 T C NR3C2 Missense_Mutation p.S888G 0.37 deleterious(0.01) benign(0.098) TCGA-CG-4469-01 4 155252779 155252779 A T DCHS2 Missense_Mutation p.L774H 0.26 tolerated(0.47) benign(0.201) TCGA-CG-4469-01 4 158282799 158282799 A C GRIA2 Missense_Mutation p.S801R 0.44 tolerated(0.11) benign(0.018) TCGA-CG-4469-01 4 175898835 175898835 A C ADAM29 Missense_Mutation p.K720T 0.40 tolerated(0.12) benign(0.122) TCGA-CG-4469-01 4 3446111 3446111 C T HGFAC Silent p.H224H 0.67 TCGA-CG-4469-01 4 42122308 42122308 T G BEND4 Missense_Mutation p.S384R 0.63 tolerated_low_confidence(0.05) probably_damaging(0.944) TCGA-CG-4469-01 4 44682845 44682845 C T GUF1 Missense_Mutation p.L138F 0.73 deleterious(0) probably_damaging(1) TCGA-CG-4469-01 4 5975440 5975440 G A C4orf50 Silent p.N592N 0.64 TCGA-CG-4469-01 4 68939662 68939662 T G TMPRSS11F Missense_Mutation p.L116F 0.36 tolerated(0.63) possibly_damaging(0.876) TCGA-CG-4469-01 4 71275771 71275771 A C PROL1 Missense_Mutation p.K242N 0.47 deleterious_low_confidence(0) unknown(0) TCGA-CG-4469-01 4 79186217 79186217 G A FRAS1 Silent p.P214P 0.41 TCGA-CG-4469-01 4 96171665 96171665 T C UNC5C Missense_Mutation p.S250G 0.30 deleterious(0) probably_damaging(0.999) TCGA-CG-4469-01 5 101735362 101735362 A G SLCO6A1 Missense_Mutation p.C571R 0.42 deleterious(0) probably_damaging(1) TCGA-CG-4469-01 5 10973668 10973668 T G CTNND2 Missense_Mutation p.K1192T 0.44 deleterious(0) probably_damaging(0.994) TCGA-CG-4469-01 5 112175553 112175553 G A APC Missense_Mutation p.S1421N 0.41 probably_damaging(0.995) TCGA-CG-4469-01 5 113698592 113698592 C T KCNN2 Silent p.V40V 0.55 TCGA-CG-4469-01 5 137713489 137713489 A G KDM3B Silent p.Q185Q 0.34 TCGA-CG-4469-01 5 140250915 140250915 G A PCDHA11 Missense_Mutation p.A743T 0.42 tolerated_low_confidence(0.08) benign(0.035) TCGA-CG-4469-01 5 140262769 140262769 G C PCDHA13 Missense_Mutation p.G306R 0.41 deleterious_low_confidence(0.05) possibly_damaging(0.576) TCGA-CG-4469-01 5 140476258 140476258 C T PCDHB2 Silent p.T628T 0.34 TCGA-CG-4469-01 5 140558007 140558007 C A PCDHB8 Missense_Mutation p.S131Y 0.10 deleterious_low_confidence(0) benign(0.276) TCGA-CG-4469-01 5 140580728 140580728 C T PCDHB11 Missense_Mutation p.R461C 0.40 deleterious_low_confidence(0) benign(0.052) TCGA-CG-4469-01 5 140773889 140773889 G A PCDHGA8 Silent p.S503S 0.33 TCGA-CG-4469-01 5 149361167 149361167 C T SLC26A2 Missense_Mutation p.R671C 0.39 tolerated(0.19) benign(0.035) TCGA-CG-4469-01 5 150278009 150278009 G A ZNF300 Silent p.Y57Y 0.38 TCGA-CG-4469-01 5 172659803 172659803 G A NKX2-5 Silent p.Y248Y 0.50 TCGA-CG-4469-01 5 176919639 176919639 C T PDLIM7 Missense_Mutation p.V46M 0.42 deleterious(0.03) probably_damaging(0.954) TCGA-CG-4469-01 5 178392727 178392727 C G ZNF454 Missense_Mutation p.T441R 0.38 deleterious(0.01) benign(0.175) TCGA-CG-4469-01 5 5462906 5462906 G A KIAA0947 Silent p.T1153T 0.39 TCGA-CG-4469-01 5 63257083 63257083 G A HTR1A Missense_Mutation p.A155V 0.41 tolerated(1) benign(0.006) TCGA-CG-4469-01 5 70860616 70860616 T C BDP1 Silent p.Y2593Y 0.37 TCGA-CG-4469-01 5 79030171 79030171 G T CMYA5 Missense_Mutation p.L1861F 0.35 probably_damaging(0.986) TCGA-CG-4469-01 5 79034232 79034232 A G CMYA5 Missense_Mutation p.D3215G 0.38 benign(0.154) TCGA-CG-4469-01 5 79095378 79095378 A G CMYA5 Missense_Mutation p.K4050R 0.40 probably_damaging(0.94) TCGA-CG-4469-01 5 82817020 82817020 T G VCAN Silent p.T965T 0.42 TCGA-CG-4469-01 5 82817101 82817101 A C VCAN Silent p.S992S 0.41 TCGA-CG-4469-01 6 11190446 11190446 G A NEDD9 Silent p.N552N 0.39 TCGA-CG-4469-01 6 117127831 117127831 A C GPRC6A Missense_Mutation p.L346R 0.30 tolerated(0.69) benign(0.005) TCGA-CG-4469-01 6 117724426 117724426 C T ROS1 Silent p.P151P 0.38 TCGA-CG-4469-01 6 118813011 118813011 A C CEP85L Silent p.T428T 0.41 TCGA-CG-4469-01 6 124979358 124979358 T A NKAIN2 Missense_Mutation p.N100K 0.36 deleterious(0.01) probably_damaging(0.998) TCGA-CG-4469-01 6 132722354 132722354 G A MOXD1 Missense_Mutation p.A71V 0.60 tolerated(0.08) possibly_damaging(0.754) TCGA-CG-4469-01 6 132859575 132859575 A G TAAR9 Silent p.G49G 0.38 TCGA-CG-4469-01 6 13486905 13486905 G A GFOD1 Missense_Mutation p.P73L 0.38 deleterious(0) probably_damaging(0.997) TCGA-CG-4469-01 6 152756946 152756946 T C SYNE1 Intron 0.62 TCGA-CG-4469-01 6 153019200 153019200 A C MYCT1 Missense_Mutation p.S55R 0.64 tolerated(0.21) benign(0.01) TCGA-CG-4469-01 6 168465674 168465674 G A FRMD1 Silent p.C175C 0.76 TCGA-CG-4469-01 6 28121369 28121369 T G ZKSCAN8 Missense_Mutation p.N437K 0.41 deleterious(0.05) benign(0.243) TCGA-CG-4469-01 6 29581206 29581206 C A GABBR1 Missense_Mutation p.E460D 0.37 tolerated(0.08) benign(0.243) TCGA-CG-4469-01 6 33366122 33366122 C G KIFC1 Missense_Mutation p.P70A 0.40 tolerated(0.37) benign(0.002) TCGA-CG-4469-01 6 39893473 39893473 G A MOCS1 Missense_Mutation p.R123W 0.30 deleterious(0) probably_damaging(0.992) TCGA-CG-4469-01 6 50682950 50682950 A C TFAP2D Missense_Mutation p.E54A 0.38 tolerated(0.18) benign(0.004) TCGA-CG-4469-01 6 51612590 51612590 A G PKHD1 Missense_Mutation p.L3275P 0.18 deleterious(0) probably_damaging(0.954) TCGA-CG-4469-01 6 69349123 69349123 A G BAI3 Missense_Mutation p.T186A 0.37 tolerated(0.27) benign(0.001) TCGA-CG-4469-01 6 72011425 72011426 - A OGFRL1 Frame_Shift_Ins p.A346Sfs*15 0.30 TCGA-CG-4469-01 6 72806819 72806819 A C RIMS1 Missense_Mutation p.K138T 0.34 deleterious(0) benign(0.352) TCGA-CG-4469-01 6 88767403 88767403 A C SPACA1 Missense_Mutation p.E113D 0.35 deleterious(0.03) probably_damaging(0.998) TCGA-CG-4469-01 6 88767404 88767404 G T SPACA1 Nonsense_Mutation p.E114* 0.35 TCGA-CG-4469-01 6 97058456 97058456 T G FHL5 Silent p.T171T 0.39 TCGA-CG-4469-01 7 101943868 101943868 G A SH2B2 Missense_Mutation p.A55T 0.67 tolerated(0.09) benign(0.162) TCGA-CG-4469-01 7 107820828 107820828 C T NRCAM Missense_Mutation p.R897H 0.27 tolerated(0.23) possibly_damaging(0.485) TCGA-CG-4469-01 7 121679542 121679542 G T PTPRZ1 Missense_Mutation p.S1846I 0.22 deleterious(0.01) benign(0.009) TCGA-CG-4469-01 7 142458458 142458458 G T PRSS1 Missense_Mutation p.E31D 0.19 tolerated(0.48) benign(0) TCGA-CG-4469-01 7 142479961 142479961 G T PRSS3P2 RNA 0.55 TCGA-CG-4469-01 7 143632690 143632690 G A OR2F2 Missense_Mutation p.R122H 0.59 deleterious(0.01) benign(0.232) TCGA-CG-4469-01 7 148876789 148876789 G T ZNF398 Missense_Mutation p.G609C 0.28 deleterious_low_confidence(0) probably_damaging(1) TCGA-CG-4469-01 7 150648916 150648916 C T KCNH2 Missense_Mutation p.G522E 0.24 deleterious(0) probably_damaging(0.997) TCGA-CG-4469-01 7 151810363 151810363 C T GALNT11 Silent p.I371I 0.03 TCGA-CG-4469-01 7 21788356 21788356 T G DNAH11 Missense_Mutation p.L2897R 0.23 probably_damaging(0.951) TCGA-CG-4469-01 7 35144314 35144314 A G DPY19L2P1 RNA 0.51 TCGA-CG-4469-01 7 37252941 37252941 T C ELMO1 Missense_Mutation p.Q318R 0.24 deleterious(0) probably_damaging(0.997) TCGA-CG-4469-01 7 45139870 45139870 G A TBRG4 3'UTR 0.61 TCGA-CG-4469-01 7 63796634 63796634 C T ZNF736 Intron 0.25 TCGA-CG-4469-01 7 6620230 6620230 C T ZDHHC4 Missense_Mutation p.S13L 0.27 tolerated(1) benign(0) TCGA-CG-4469-01 7 6621869 6621869 T A ZDHHC4 Nonsense_Mutation p.C119* 0.33 TCGA-CG-4469-01 7 73530167 73530167 G A LIMK1 Silent p.A482A 0.32 TCGA-CG-4469-01 7 82764520 82764520 T G PCLO Missense_Mutation p.K782N 0.57 unknown(0) TCGA-CG-4469-01 7 82784942 82784942 T G PCLO Missense_Mutation p.T339P 0.24 unknown(0) TCGA-CG-4469-01 7 87069058 87069058 C G ABCB4 Missense_Mutation p.K552N 0.08 deleterious(0) possibly_damaging(0.789) TCGA-CG-4469-01 7 88963642 88963642 A C ZNF804B Missense_Mutation p.K449T 0.23 deleterious(0) probably_damaging(0.952) TCGA-CG-4469-01 8 103573148 103573148 G A ODF1 3'UTR 0.25 TCGA-CG-4469-01 8 104898096 104898096 T G RIMS2 Silent p.S423S 0.08 TCGA-CG-4469-01 8 105503141 105503141 A G LRP12 Silent p.S780S 0.84 TCGA-CG-4469-01 8 113301723 113301723 A G CSMD3 Missense_Mutation p.S3007P 0.86 deleterious(0.01) probably_damaging(0.985) TCGA-CG-4469-01 8 113678505 113678505 C A CSMD3 Splice_Site p.X939_splice 0.48 TCGA-CG-4469-01 8 113812478 113812478 A C CSMD3 Missense_Mutation p.L629V 0.47 deleterious(0.02) probably_damaging(0.973) TCGA-CG-4469-01 8 134232985 134232985 C T WISP1 Missense_Mutation p.R171W 0.27 deleterious(0.01) probably_damaging(0.932) TCGA-CG-4469-01 8 136657345 136657345 A G KHDRBS3 Missense_Mutation p.T312A 0.08 tolerated(0.26) benign(0.02) TCGA-CG-4469-01 8 192905 192905 G A ZNF596 Missense_Mutation p.D11N 0.27 deleterious(0) probably_damaging(0.999) TCGA-CG-4469-01 8 23429191 23429191 G A SLC25A37 Silent p.S280S 0.30 TCGA-CG-4469-01 8 23429192 23429192 G T SLC25A37 Missense_Mutation p.G281C 0.30 deleterious(0) probably_damaging(1) TCGA-CG-4469-01 8 2796225 2796225 T A CSMD1 Missense_Mutation p.E3526V 0.44 probably_damaging(0.998) TCGA-CG-4469-01 8 2944709 2944709 C G CSMD1 Missense_Mutation p.G2462R 0.56 probably_damaging(0.983) TCGA-CG-4469-01 8 3038632 3038632 T G CSMD1 Missense_Mutation p.T1909P 0.58 probably_damaging(0.947) TCGA-CG-4469-01 8 3253782 3253782 A C CSMD1 Missense_Mutation p.F843V 0.73 benign(0.007) TCGA-CG-4469-01 8 3855488 3855488 T G CSMD1 Missense_Mutation p.D252A 0.54 probably_damaging(0.999) TCGA-CG-4469-01 8 49644049 49644049 T G EFCAB1 Missense_Mutation p.E24D 0.38 deleterious(0) probably_damaging(0.999) TCGA-CG-4469-01 8 72938301 72938301 A C TRPA1 Missense_Mutation p.L982R 0.30 deleterious(0) probably_damaging(0.999) TCGA-CG-4469-01 8 73480233 73480233 C A KCNB2 Missense_Mutation p.F88L 0.53 deleterious(0) possibly_damaging(0.766) TCGA-CG-4469-01 8 73921176 73921176 A G TERF1 Missense_Mutation p.R19G 0.23 tolerated_low_confidence(0.07) benign(0.021) TCGA-CG-4469-01 9 100085179 100085179 C T CCDC180 Silent p.C452C 0.32 TCGA-CG-4469-01 9 100456040 100456040 G A XPA Silent p.G58G 0.41 TCGA-CG-4469-01 9 112705446 112705446 C T PALM2 Missense_Mutation p.T326M 0.40 deleterious(0) possibly_damaging(0.885) TCGA-CG-4469-01 9 119203072 119203072 C A ASTN2 Splice_Site p.X1149_splice 0.42 TCGA-CG-4469-01 9 120475788 120475788 T G TLR4 Missense_Mutation p.V461G 0.38 deleterious(0) probably_damaging(1) TCGA-CG-4469-01 9 140079432 140079432 G A ANAPC2 Silent p.H327H 0.31 TCGA-CG-4469-01 9 17789403 17789403 A C SH3GL2 Missense_Mutation p.K160T 0.37 deleterious(0) probably_damaging(0.969) TCGA-CG-4469-01 9 17795825 17795825 C A SH3GL2 3'UTR 0.35 TCGA-CG-4469-01 9 21202186 21202186 A T IFNA7 5'UTR 0.42 TCGA-CG-4469-01 9 33922786 33922786 C G UBAP2 Missense_Mutation p.A1055P 0.47 deleterious(0.02) unknown(0) TCGA-CG-4469-01 9 37541762 37541762 C T FBXO10 Missense_Mutation p.E2K 0.28 deleterious(0) probably_damaging(0.994) TCGA-CG-4469-01 9 43627079 43627079 A G SPATA31A6 Silent p.T536T 0.71 TCGA-CG-4469-01 9 77282711 77282711 T C RORB Silent p.S335S 0.43 TCGA-CG-4469-01 9 84531279 84531279 A - SPATA31D5P RNA 0.33 TCGA-CG-4469-01 9 94493274 94493274 G T ROR2 Missense_Mutation p.N367K 0.36 deleterious(0) probably_damaging(0.984) TCGA-CG-4469-01 X 100078953 100078953 G C CSTF2 Missense_Mutation p.A175P 0.74 deleterious(0) probably_damaging(0.999) TCGA-CG-4469-01 X 104512217 104512217 A C IL1RAPL2 Missense_Mutation p.K230N 0.80 deleterious(0.01) probably_damaging(0.925) TCGA-CG-4469-01 X 105153087 105153087 T G NRK Missense_Mutation p.V486G 0.71 tolerated(0.37) benign(0) TCGA-CG-4469-01 X 122318375 122318375 G A GRIA3 5'UTR 0.74 TCGA-CG-4469-01 X 130412103 130412103 G A IGSF1 Missense_Mutation p.L688F 0.28 deleterious(0.04) probably_damaging(1) TCGA-CG-4469-01 X 135427962 135427962 T C GPR112 Silent p.T699T 0.94 TCGA-CG-4469-01 X 144337215 144337215 T G SPANXN1 Missense_Mutation p.L34V 0.92 tolerated(0.27) possibly_damaging(0.871) TCGA-CG-4469-01 X 144905446 144905446 G C SLITRK2 Silent p.L501L 0.89 TCGA-CG-4469-01 X 147967480 147967480 T G AFF2 Missense_Mutation p.L442V 0.92 tolerated(0.41) probably_damaging(0.994) TCGA-CG-4469-01 X 152807854 152807854 C T ATP2B3 Silent p.G246G 0.88 TCGA-CG-4469-01 X 26157683 26157683 T A MAGEB18 Missense_Mutation p.I194N 0.44 deleterious(0) possibly_damaging(0.82) TCGA-CG-4469-01 X 55650731 55650731 A C FOXR2 Missense_Mutation p.N196T 0.73 deleterious(0) probably_damaging(0.982) TCGA-CG-4469-01 X 57367776 57367776 G C FAAH2 Missense_Mutation p.R232P 0.32 deleterious(0) probably_damaging(1) TCGA-CG-4469-01 X 77913151 77913151 A C ZCCHC5 Missense_Mutation p.V256G 0.67 tolerated(0.07) possibly_damaging(0.49) TCGA-CG-4469-01 X 77913452 77913452 A C ZCCHC5 Missense_Mutation p.S156A 0.86 tolerated(1) benign(0.005) TCGA-CG-4469-01 X 8434054 8434054 T C VCX3B Missense_Mutation p.L124P 0.29 deleterious(0.01) unknown(0) TCGA-CG-4469-01 X 8434114 8434114 T C VCX3B Missense_Mutation p.L144P 0.24 tolerated(0.09) unknown(0) TCGA-CG-4469-01 X 86087115 86087115 A C DACH2 Missense_Mutation p.N586T 0.69 tolerated_low_confidence(0.12) benign(0.021) TCGA-CG-4469-01 X 99551215 99551215 A C PCDH19 3'UTR 0.78 TCGA-CG-4474-01 10 1151085 1151085 G A WDR37 Silent p.T327T 0.19 TCGA-CG-4474-01 10 11971960 11971960 C T UPF2 Missense_Mutation p.R1238H 0.18 deleterious(0.02) probably_damaging(0.964) TCGA-CG-4474-01 10 121339500 121339500 T C TIAL1 Missense_Mutation p.M149V 0.14 tolerated(0.47) benign(0.02) TCGA-CG-4474-01 10 121431795 121431796 - CTCATC BAG3 In_Frame_Ins p.S184_S185dup 0.21 TCGA-CG-4474-01 10 123274809 123274809 G T FGFR2 Missense_Mutation p.T371K 0.19 tolerated(0.83) benign(0.127) TCGA-CG-4474-01 11 32610588 32610588 G C EIF3M Missense_Mutation p.K115N 0.20 tolerated(0.14) benign(0.007) TCGA-CG-4474-01 11 5537612 5537612 C A UBQLNL Silent p.L20L 0.29 TCGA-CG-4474-01 11 8246154 8246154 C T LMO1 3'UTR 0.44 TCGA-CG-4474-01 11 94602566 94602566 C T AMOTL1 Missense_Mutation p.R898W 0.25 deleterious(0) probably_damaging(0.924) TCGA-CG-4474-01 11 96124155 96124155 A G JRKL Silent p.G114G 0.30 TCGA-CG-4474-01 12 133398686 133398686 C T GOLGA3 Missense_Mutation p.G10D 0.24 tolerated_low_confidence(0.12) possibly_damaging(0.818) TCGA-CG-4474-01 12 39726737 39726737 G A KIF21A Missense_Mutation p.A887V 0.26 tolerated(0.22) benign(0.383) TCGA-CG-4474-01 12 46245192 46245192 C T ARID2 Nonsense_Mutation p.Q1096* 0.22 TCGA-CG-4474-01 12 46246525 46246528 CAAT - ARID2 Frame_Shift_Del p.I1541Vfs*24 0.30 TCGA-CG-4474-01 12 53346430 53346430 T - KRT18 Intron 0.12 TCGA-CG-4474-01 12 53586645 53586645 C T ITGB7 Silent p.T592T 0.11 TCGA-CG-4474-01 12 6680117 6680118 GG - CHD4 Frame_Shift_Del p.P1880Sfs*11 0.23 TCGA-CG-4474-01 12 81111227 81111227 C T MYF5 Missense_Mutation p.R129C 0.29 deleterious(0.02) probably_damaging(0.939) TCGA-CG-4474-01 13 52971746 52971747 AT - THSD1 Frame_Shift_Del p.Y214Cfs*21 0.25 TCGA-CG-4474-01 13 96592282 96592282 G A UGGT2 Nonsense_Mutation p.Q581* 0.18 TCGA-CG-4474-01 14 34270057 34270057 G A NPAS3 Silent p.A848A 0.44 TCGA-CG-4474-01 14 34420027 34420027 G A EGLN3 5'UTR 0.21 TCGA-CG-4474-01 14 37132608 37132608 G A PAX9 Missense_Mutation p.A171T 0.18 tolerated(0.39) probably_damaging(0.99) TCGA-CG-4474-01 15 76019658 76019658 C A ODF3L1 Missense_Mutation p.P201H 0.10 deleterious(0) probably_damaging(1) TCGA-CG-4474-01 15 89424648 89424648 G T HAPLN3 Missense_Mutation p.R145S 0.26 deleterious(0) probably_damaging(0.986) TCGA-CG-4474-01 16 23382763 23382763 A G SCNN1B Missense_Mutation p.T342A 0.12 deleterious(0) probably_damaging(0.999) TCGA-CG-4474-01 16 338058 338058 C T AXIN1 3'UTR 0.34 TCGA-CG-4474-01 16 68842627 68842627 T A CDH1 Missense_Mutation p.V188D 0.32 deleterious(0) probably_damaging(1) TCGA-CG-4474-01 16 7759122 7759122 G A RBFOX1 Missense_Mutation p.V375I 0.22 tolerated(0.46) benign(0.03) TCGA-CG-4474-01 17 21826201 21826201 C T FAM27L RNA 0.22 TCGA-CG-4474-01 17 38652436 38652436 G A TNS4 Missense_Mutation p.P81L 0.22 tolerated(0.08) benign(0.038) TCGA-CG-4474-01 17 40639324 40639324 C T ATP6V0A1 Missense_Mutation p.A328V 0.12 deleterious(0) probably_damaging(0.999) TCGA-CG-4474-01 17 46621062 46621062 G A HOXB2 Missense_Mutation p.R147C 0.12 deleterious(0) probably_damaging(1) TCGA-CG-4474-01 17 56435161 56435161 C - RNF43 Frame_Shift_Del p.G659Vfs*41 0.20 TCGA-CG-4474-01 17 61621612 61621612 G A KCNH6 Missense_Mutation p.A782T 0.21 tolerated_low_confidence(0.22) benign(0.002) TCGA-CG-4474-01 18 29056361 29056361 A T DSG3 3'UTR 0.45 TCGA-CG-4474-01 19 11123694 11123694 G A SMARCA4 Missense_Mutation p.G782S 0.13 probably_damaging(0.991) TCGA-CG-4474-01 19 18218412 18218412 C T MAST3 Missense_Mutation p.P19S 0.07 tolerated(0.18) benign(0.147) TCGA-CG-4474-01 19 18255980 18255980 C T MAST3 Missense_Mutation p.R965W 0.15 deleterious(0) probably_damaging(1) TCGA-CG-4474-01 19 19049214 19049214 C T HOMER3 Missense_Mutation p.R84H 0.32 deleterious(0.03) benign(0.071) TCGA-CG-4474-01 19 33486993 33486994 CG - RHPN2 Frame_Shift_Del p.T453Ifs*9 0.24 TCGA-CG-4474-01 19 34791377 34791377 G A KIAA0355 5'UTR 0.37 TCGA-CG-4474-01 19 36227984 36227984 C G KMT2B Intron 0.20 TCGA-CG-4474-01 19 4499495 4499495 G A HDGFRP2 Missense_Mutation p.R528H 0.45 deleterious(0) possibly_damaging(0.715) TCGA-CG-4474-01 19 50398344 50398344 G A IL4I1 Missense_Mutation p.R138C 0.05 deleterious(0) probably_damaging(1) TCGA-CG-4474-01 1 114429946 114429946 G A BCL2L15 Silent p.L18L 0.06 TCGA-CG-4474-01 1 152286817 152286817 T G FLG Missense_Mutation p.K182T 0.23 possibly_damaging(0.535) TCGA-CG-4474-01 1 161043088 161043088 G A PVRL4 Missense_Mutation p.P412L 0.20 tolerated(0.13) benign(0.002) TCGA-CG-4474-01 1 173457025 173457025 G A PRDX6 3'UTR 0.21 TCGA-CG-4474-01 1 20827537 20827537 C T MUL1 Silent p.S235S 0.21 TCGA-CG-4474-01 1 236850010 236850010 G A ACTN2 Missense_Mutation p.V13M 0.28 tolerated(0.12) benign(0.063) TCGA-CG-4474-01 1 40981216 40981216 G C EXO5 Missense_Mutation p.G334R 0.06 deleterious(0) probably_damaging(1) TCGA-CG-4474-01 1 45501806 45501806 C T ZSWIM5 Missense_Mutation p.R687H 0.18 deleterious(0.01) unknown(0) TCGA-CG-4474-01 1 46685674 46685674 G A LURAP1 Missense_Mutation p.E168K 0.24 tolerated(0.06) benign(0.162) TCGA-CG-4474-01 20 13251272 13251272 G A ISM1 Missense_Mutation p.R87Q 0.23 tolerated(0.63) benign(0.002) TCGA-CG-4474-01 20 19662610 19662610 C T SLC24A3 Silent p.D292D 0.15 TCGA-CG-4474-01 20 30742950 30742950 A G TM9SF4 Silent p.V430V 0.09 TCGA-CG-4474-01 20 3214843 3214843 G A SLC4A11 Missense_Mutation p.R180W 0.18 deleterious(0.01) probably_damaging(0.947) TCGA-CG-4474-01 20 33508432 33508432 T A ACSS2 Missense_Mutation p.C368S 0.06 deleterious(0.02) benign(0.393) TCGA-CG-4474-01 20 62421407 62421407 G A ZBTB46 Missense_Mutation p.P235L 0.23 tolerated(0.07) probably_damaging(0.999) TCGA-CG-4474-01 21 34918579 34918579 G A SON Silent p.A46A 0.26 TCGA-CG-4474-01 21 34924325 34924325 T C SON Silent p.L930L 0.05 TCGA-CG-4474-01 21 42824698 42824698 A C MX1 Missense_Mutation p.K554Q 0.27 tolerated(0.34) possibly_damaging(0.703) TCGA-CG-4474-01 22 36685273 36685273 C G MYH9 Missense_Mutation p.R1472P 0.17 probably_damaging(1) TCGA-CG-4474-01 2 109463198 109463198 C T CCDC138 Missense_Mutation p.S443L 0.20 tolerated(0.22) benign(0) TCGA-CG-4474-01 2 179604668 179604668 T G TTN Missense_Mutation p.N4431T 0.21 TCGA-CG-4474-01 2 202558645 202558645 T G MPP4 Silent p.P11P 0.07 TCGA-CG-4474-01 2 207424813 207424813 G T ADAM23 Missense_Mutation p.K380N 0.25 tolerated(0.09) benign(0.151) TCGA-CG-4474-01 2 234775774 234775774 T C MSL3P1 RNA 0.15 TCGA-CG-4474-01 2 242141701 242141701 C T ANO7 Silent p.A289A 0.18 TCGA-CG-4474-01 2 38908455 38908455 G A GALM Missense_Mutation p.V127I 0.23 tolerated(0.24) benign(0.095) TCGA-CG-4474-01 2 88890489 88890489 A - EIF2AK3 Frame_Shift_Del p.F283Lfs*23 0.16 TCGA-CG-4474-01 2 99449454 99449454 C T KIAA1211L Silent p.S82S 0.14 TCGA-CG-4474-01 3 10354288 10354288 G A SEC13 Silent p.H97H 0.28 TCGA-CG-4474-01 3 118917988 118917991 GTGA - UPK1B Splice_Site p.X244_splice 0.14 TCGA-CG-4474-01 3 16217180 16217180 C T GALNT15 Silent p.P174P 0.18 TCGA-CG-4474-01 3 173525589 173525589 G A NLGN1 Missense_Mutation p.V205I 0.31 deleterious(0.04) benign(0.324) TCGA-CG-4474-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.23 deleterious(0.04) probably_damaging(0.96) TCGA-CG-4474-01 3 38278355 38278355 G A OXSR1 Missense_Mutation p.G326E 0.04 deleterious(0.03) probably_damaging(0.955) TCGA-CG-4474-01 3 9757165 9757165 C A CPNE9 Missense_Mutation p.N259K 0.10 deleterious(0.01) probably_damaging(0.997) TCGA-CG-4474-01 4 13602962 13602962 A G BOD1L1 Silent p.I1854I 0.05 TCGA-CG-4474-01 4 155507659 155507659 G A FGA Nonsense_Mutation p.R308* 0.22 TCGA-CG-4474-01 4 5564606 5564606 T A EVC2 Missense_Mutation p.K1299I 0.21 deleterious(0) probably_damaging(0.94) TCGA-CG-4474-01 4 73175207 73175207 T A ADAMTS3 Missense_Mutation p.N696Y 0.27 tolerated(1) benign(0.004) TCGA-CG-4474-01 5 153433289 153433289 C T MFAP3 3'UTR 0.04 TCGA-CG-4474-01 5 176730061 176730061 G A RAB24 Silent p.F45F 0.10 TCGA-CG-4474-01 5 180038423 180038423 G C FLT4 Missense_Mutation p.S1198R 0.26 deleterious(0.03) benign(0.123) TCGA-CG-4474-01 5 66430465 66430465 G A MAST4 Missense_Mutation p.V781M 0.19 probably_damaging(0.997) TCGA-CG-4474-01 5 89923174 89923174 T C GPR98 Silent p.P273P 0.09 TCGA-CG-4474-01 5 96503524 96503524 G A RIOK2 Silent p.Y348Y 0.15 TCGA-CG-4474-01 6 12123037 12123037 C T HIVEP1 Silent p.P1003P 0.17 TCGA-CG-4474-01 6 126661513 126661513 C T CENPW Nonsense_Mutation p.Q32* 0.20 TCGA-CG-4474-01 6 31600597 31600597 C T PRRC2A Missense_Mutation p.R1383W 0.17 unknown(0) TCGA-CG-4474-01 6 83905791 83905791 G A RWDD2A Missense_Mutation p.V227M 0.21 tolerated(0.17) benign(0.005) TCGA-CG-4474-01 6 85446536 85446536 G A TBX18 Missense_Mutation p.T564M 0.18 deleterious_low_confidence(0.02) probably_damaging(0.994) TCGA-CG-4474-01 7 120935723 120935723 C G CPED1 3'UTR 0.33 TCGA-CG-4474-01 7 134849845 134849845 G A TMEM140 3'UTR 0.29 TCGA-CG-4474-01 7 142573294 142573294 C T TRPV6 Missense_Mutation p.R350H 0.08 deleterious(0) probably_damaging(0.996) TCGA-CG-4474-01 7 150775728 150775728 C T FASTK Missense_Mutation p.R249Q 0.08 deleterious(0.04) possibly_damaging(0.842) TCGA-CG-4474-01 7 5568970 5568970 C G ACTB Missense_Mutation p.R62T 0.19 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-CG-4474-01 7 81381520 81381520 G A HGF Nonsense_Mutation p.R181* 0.13 TCGA-CG-4474-01 7 86526893 86526893 C T KIAA1324L Missense_Mutation p.A872T 0.10 tolerated(0.16) benign(0.034) TCGA-CG-4474-01 7 89939392 89939392 G T C7orf63 Missense_Mutation p.G889V 0.05 deleterious(0) probably_damaging(0.978) TCGA-CG-4474-01 8 10583557 10583557 C T SOX7 Silent p.P338P 0.19 TCGA-CG-4474-01 8 13259102 13259102 C T DLC1 Silent p.A350A 0.14 TCGA-CG-4474-01 8 38693782 38693782 G A TACC1 Missense_Mutation p.V606M 0.13 deleterious(0.01) probably_damaging(0.995) TCGA-CG-4474-01 8 42586889 42586889 G A CHRNB3 Missense_Mutation p.A147T 0.29 deleterious(0) probably_damaging(0.953) TCGA-CG-4474-01 8 48874864 48874864 G T MCM4 Splice_Site p.X134_splice 0.09 TCGA-CG-4474-01 8 6500543 6500543 C T MCPH1 Silent p.A827A 0.06 TCGA-CG-4474-01 9 134049567 134049567 G A NUP214 Missense_Mutation p.E1007K 0.14 possibly_damaging(0.81) TCGA-CG-4474-01 X 128878049 128878049 T G XPNPEP2 Splice_Site p.X78_splice 0.20 TCGA-CG-4474-01 X 148062319 148062322 AAGT - AFF2 Splice_Site p.X1208_splice 0.19 TCGA-CG-4474-01 X 153763395 153763395 C A G6PD Missense_Mutation p.C188F 0.18 deleterious(0) probably_damaging(0.997) TCGA-CG-4474-01 X 154736649 154736649 A G TMLHE Missense_Mutation p.I302T 0.23 deleterious(0.02) possibly_damaging(0.547) TCGA-CG-4474-01 X 21995314 21995314 G A SMS Silent p.S155S 0.16 TCGA-CG-4474-01 X 31854892 31854892 C A DMD Missense_Mutation p.E2381D 0.15 benign(0.001) TCGA-CG-4474-01 X 77529189 77529189 C G CYSLTR1 Missense_Mutation p.D19H 0.18 deleterious(0) probably_damaging(0.952) TCGA-CG-4475-01 10 76789623 76789623 G A KAT6B Missense_Mutation p.E1681K 0.36 probably_damaging(0.991) TCGA-CG-4475-01 11 1016412 1016414 GAG - MUC6 In_Frame_Del p.S2130del 0.38 TCGA-CG-4475-01 11 109294681 109294681 G A C11orf87 Missense_Mutation p.G108S 0.15 tolerated(0.75) benign(0.029) TCGA-CG-4475-01 11 71821116 71821116 C G LRTOMT 3'UTR 0.20 TCGA-CG-4475-01 11 92702951 92702951 G A MTNR1B Silent p.P20P 0.22 TCGA-CG-4475-01 12 101739354 101739354 C T UTP20 Missense_Mutation p.T1543I 0.31 tolerated(0.16) benign(0.04) TCGA-CG-4475-01 12 122078977 122078982 GACCAC - ORAI1 In_Frame_Del p.H115_D116del 0.56 TCGA-CG-4475-01 12 49690240 49690240 G T PRPH Missense_Mutation p.R211L 0.19 deleterious(0) probably_damaging(0.997) TCGA-CG-4475-01 12 53673625 53673625 C T ESPL1 Missense_Mutation p.T825I 0.17 tolerated(0.42) benign(0.067) TCGA-CG-4475-01 12 72038074 72038074 T A ZFC3H1 Missense_Mutation p.Q435L 0.21 deleterious(0.01) possibly_damaging(0.629) TCGA-CG-4475-01 13 29238647 29238647 T G POMP Missense_Mutation p.F35V 0.47 tolerated(0.07) benign(0.059) TCGA-CG-4475-01 13 47351721 47351721 C A ESD Missense_Mutation p.G213V 0.42 deleterious(0.02) possibly_damaging(0.892) TCGA-CG-4475-01 14 104570728 104570728 C T ASPG Nonsense_Mutation p.Q281* 0.12 TCGA-CG-4475-01 14 50053093 50053093 A T RPS29 5'UTR 0.37 TCGA-CG-4475-01 15 33066430 33066430 C T FMN1 3'UTR 0.22 TCGA-CG-4475-01 15 41766890 41766890 C G RTF1 Missense_Mutation p.L426V 0.38 deleterious(0.01) probably_damaging(0.962) TCGA-CG-4475-01 17 10546195 10546195 G A MYH3 Missense_Mutation p.T510M 0.16 tolerated(0.08) benign(0.439) TCGA-CG-4475-01 17 21731501 21731501 G A UBBP4 Silent p.Q192Q 0.29 TCGA-CG-4475-01 17 47587929 47587929 G A NGFR Missense_Mutation p.V242M 0.18 tolerated(0.1) possibly_damaging(0.551) TCGA-CG-4475-01 17 62855907 62855907 C T LRRC37A3 Missense_Mutation p.D1453N 0.12 deleterious(0.01) possibly_damaging(0.78) TCGA-CG-4475-01 19 17025586 17025586 G A CPAMD8 Missense_Mutation p.R1270C 0.38 deleterious(0.02) benign(0.329) TCGA-CG-4475-01 19 39228254 39228254 G C CAPN12 Silent p.L330L 0.45 TCGA-CG-4475-01 19 44351768 44351768 A G ZNF283 Missense_Mutation p.I339V 0.18 deleterious(0.02) benign(0.335) TCGA-CG-4475-01 19 571480 571480 T C BSG 5'Flank 0.40 TCGA-CG-4475-01 19 58117777 58117777 A C ZNF530 Missense_Mutation p.Y295S 0.11 deleterious(0) probably_damaging(0.999) TCGA-CG-4475-01 1 145588424 145588425 TG C NUDT17 Frame_Shift_Del p.H150Afs*23 0.17 TCGA-CG-4475-01 1 148933298 148933298 T G RP11-14N7.2 RNA 0.09 TCGA-CG-4475-01 1 152283872 152283872 T G FLG Missense_Mutation p.T1164P 0.07 possibly_damaging(0.507) TCGA-CG-4475-01 1 152671750 152671750 A G LCE2A 3'UTR 0.40 TCGA-CG-4475-01 1 155449351 155449351 G C ASH1L Missense_Mutation p.P1104A 0.59 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CG-4475-01 1 155450163 155450163 G C ASH1L Missense_Mutation p.S833C 0.46 deleterious_low_confidence(0) benign(0.346) TCGA-CG-4475-01 1 232564213 232564213 C T SIPA1L2 Missense_Mutation p.D1452N 0.09 deleterious(0.01) possibly_damaging(0.744) TCGA-CG-4475-01 1 236718881 236718881 G A HEATR1 Silent p.S1908S 0.18 TCGA-CG-4475-01 1 246727680 246727680 C T TFB2M Missense_Mutation p.E124K 0.17 deleterious(0) probably_damaging(0.989) TCGA-CG-4475-01 1 248366472 248366472 T C OR2M3 Missense_Mutation p.F35L 0.28 deleterious(0.04) possibly_damaging(0.481) TCGA-CG-4475-01 1 248366498 248366498 T C OR2M3 Silent p.S43S 0.27 TCGA-CG-4475-01 1 248366499 248366499 G A OR2M3 Missense_Mutation p.V44I 0.27 tolerated(0.24) benign(0.001) TCGA-CG-4475-01 1 248487715 248487715 A G OR2M7 Silent p.D52D 0.10 TCGA-CG-4475-01 1 248487811 248487811 A G OR2M7 Silent p.H20H 0.03 TCGA-CG-4475-01 1 70716454 70716454 A G SRSF11 Missense_Mutation p.D474G 0.28 deleterious_low_confidence(0) unknown(0) TCGA-CG-4475-01 20 18297430 18297430 G A ZNF133 Silent p.G644G 0.22 TCGA-CG-4475-01 20 2641294 2641294 C T IDH3B Intron 0.11 TCGA-CG-4475-01 20 31291084 31291084 G C COMMD7 3'UTR 0.13 TCGA-CG-4475-01 20 36624824 36624824 A C TTI1 Missense_Mutation p.I1013M 0.20 tolerated(0.12) possibly_damaging(0.822) TCGA-CG-4475-01 20 49565188 49565188 T C DPM1 Silent p.P91P 0.24 TCGA-CG-4475-01 20 51872838 51872838 T G TSHZ2 Silent p.S947S 0.11 TCGA-CG-4475-01 21 42647386 42647386 C T BACE2 Silent p.S464S 0.13 TCGA-CG-4475-01 2 175213182 175213182 C T CIR1 3'UTR 0.13 TCGA-CG-4475-01 2 179543553 179543553 A G TTN Silent p.P11249P 0.46 TCGA-CG-4475-01 2 189859318 189859318 C T COL3A1 Missense_Mutation p.R449C 0.49 unknown(0) TCGA-CG-4475-01 2 20135333 20135333 G A WDR35 Missense_Mutation p.R827W 0.35 deleterious(0) possibly_damaging(0.667) TCGA-CG-4475-01 2 50724576 50724576 G T NRXN1 Missense_Mutation p.T965N 0.18 tolerated(0.07) possibly_damaging(0.694) TCGA-CG-4475-01 3 130698260 130698260 A G ATP2C1 Missense_Mutation p.I614V 0.17 tolerated(0.06) benign(0.444) TCGA-CG-4475-01 4 94436498 94436498 G A GRID2 Missense_Mutation p.R710Q 0.23 tolerated(0.1) benign(0.281) TCGA-CG-4475-01 5 140792994 140792994 C T PCDHGA10 Silent p.R84R 0.13 TCGA-CG-4475-01 5 141694444 141694444 G A SPRY4 Missense_Mutation p.T100M 0.46 tolerated(0.15) benign(0.008) TCGA-CG-4475-01 5 150934214 150934214 C A FAT2 Silent p.G1218G 0.34 TCGA-CG-4475-01 5 43294196 43294196 G C HMGCS1 Missense_Mutation p.T382S 0.36 tolerated(1) benign(0.019) TCGA-CG-4475-01 5 7869264 7869264 G T MTRR Silent p.V6V 0.20 TCGA-CG-4475-01 6 128298175 128298175 T A PTPRK Missense_Mutation p.I1252F 0.36 deleterious(0) probably_damaging(0.974) TCGA-CG-4475-01 6 161470483 161470483 C T MAP3K4 Silent p.L393L 0.15 TCGA-CG-4475-01 6 32172008 32172008 G A NOTCH4 Silent p.D1008D 0.07 TCGA-CG-4475-01 6 90605698 90605698 C G GJA10 Missense_Mutation p.P504R 0.29 tolerated_low_confidence(0.17) benign(0) TCGA-CG-4475-01 7 64639816 64639816 A G INTS4L1 RNA 0.29 TCGA-CG-4475-01 7 94293463 94293463 G A PEG10 Missense_Mutation p.E199K 0.05 deleterious(0) probably_damaging(0.999) TCGA-CG-4475-01 8 100673652 100673652 A T VPS13B Silent p.I2018I 0.09 TCGA-CG-4475-01 8 106815406 106815406 G A ZFPM2 Silent p.L1032L 0.41 TCGA-CG-4475-01 8 114186043 114186043 G A CSMD3 Missense_Mutation p.T206I 0.06 deleterious(0.02) benign(0.042) TCGA-CG-4475-01 8 145154720 145154723 GCCC CCA SHARPIN Frame_Shift_Del p.R181Lfs*25 0.28 TCGA-CG-4475-01 8 30695201 30695201 A T TEX15 Missense_Mutation p.S2484T 0.24 tolerated(0.5) benign(0.15) TCGA-CG-4475-01 8 90937575 90937575 G A OSGIN2 Missense_Mutation p.E489K 0.18 tolerated(0.05) benign(0.09) TCGA-CG-4475-01 9 101911613 101911613 T C TGFBR1 3'UTR 0.08 TCGA-CG-4475-01 9 124094717 124094717 C T GSN Missense_Mutation p.R729W 0.21 deleterious(0) probably_damaging(0.976) TCGA-CG-4475-01 9 131151545 131151545 C T URM1 Missense_Mutation p.P65L 0.11 deleterious(0) probably_damaging(0.998) TCGA-CG-4475-01 9 133948214 133948214 G A LAMC3 Missense_Mutation p.A1137T 0.24 tolerated(0.33) benign(0.004) TCGA-CG-4475-01 9 134319661 134319661 G C PRRC2B Missense_Mutation p.E187Q 0.10 deleterious(0.04) probably_damaging(0.999) TCGA-CG-4475-01 9 134319676 134319676 G A PRRC2B Missense_Mutation p.D192N 0.13 deleterious(0.04) probably_damaging(1) TCGA-CG-4476-01 10 103370992 103370992 G C FBXW4 3'UTR 0.06 TCGA-CG-4476-01 10 29769635 29769635 A T SVIL Nonsense_Mutation p.Y1736* 0.09 TCGA-CG-4476-01 10 32833207 32833209 AAG - CCDC7 In_Frame_Del p.E372del 0.12 TCGA-CG-4476-01 10 48414362 48414362 C A GDF2 Missense_Mutation p.S169I 0.32 deleterious(0.04) benign(0.053) TCGA-CG-4476-01 10 75289589 75289589 G A USP54 Missense_Mutation p.R637C 0.08 deleterious(0.03) benign(0.005) TCGA-CG-4476-01 11 132527089 132527089 T C OPCML Missense_Mutation p.Y98C 0.11 deleterious(0) probably_damaging(0.996) TCGA-CG-4476-01 11 47814468 47814468 C A NUP160 Missense_Mutation p.R1107L 0.13 deleterious(0) probably_damaging(1) TCGA-CG-4476-01 11 60184013 60184013 C T MS4A14 Silent p.G557G 0.11 TCGA-CG-4476-01 11 65743976 65743976 C T SART1 Silent p.R561R 0.21 TCGA-CG-4476-01 11 77066712 77066712 C T PAK1 Splice_Site p.X258_splice 0.11 TCGA-CG-4476-01 11 86663042 86663042 C T FZD4 Silent p.E252E 0.17 TCGA-CG-4476-01 11 89774511 89774511 G T TRIM49C Missense_Mutation p.K384N 0.08 deleterious(0) possibly_damaging(0.887) TCGA-CG-4476-01 11 93543040 93543040 C T MED17 Missense_Mutation p.S581L 0.09 deleterious(0.01) benign(0.371) TCGA-CG-4476-01 12 104118856 104118856 G A STAB2 Missense_Mutation p.R1596H 0.24 tolerated(0.05) possibly_damaging(0.782) TCGA-CG-4476-01 12 108917056 108917056 G C SART3 3'UTR 0.22 TCGA-CG-4476-01 12 112600915 112600915 C G HECTD4 Missense_Mutation p.D4205H 0.21 probably_damaging(0.984) TCGA-CG-4476-01 12 124315205 124315205 G C DNAH10 Missense_Mutation p.E1384Q 0.13 benign(0.257) TCGA-CG-4476-01 12 21995340 21995340 C T ABCC9 Missense_Mutation p.M1127I 0.05 tolerated(0.1) benign(0.001) TCGA-CG-4476-01 12 41900359 41900359 T A PDZRN4 Silent p.P315P 0.15 TCGA-CG-4476-01 12 42858256 42858256 A C PRICKLE1 Missense_Mutation p.L527R 0.11 tolerated(0.91) probably_damaging(0.959) TCGA-CG-4476-01 12 9074320 9074320 C T PHC1 Nonsense_Mutation p.Q144* 0.05 TCGA-CG-4476-01 12 91445274 91445274 C A KERA Missense_Mutation p.C303F 0.18 deleterious(0.01) benign(0.053) TCGA-CG-4476-01 12 97073407 97073407 G A C12orf55 Missense_Mutation p.V1865M 0.17 deleterious(0) possibly_damaging(0.815) TCGA-CG-4476-01 13 19751671 19751671 G C TUBA3C Missense_Mutation p.S151C 0.20 deleterious_low_confidence(0.04) probably_damaging(1) TCGA-CG-4476-01 13 36379850 36379850 G T DCLK1 Missense_Mutation p.H644N 0.07 deleterious(0.01) benign(0.216) TCGA-CG-4476-01 13 37446989 37446989 T C SMAD9 Missense_Mutation p.K159R 0.25 tolerated(0.32) benign(0.002) TCGA-CG-4476-01 13 49924993 49924993 G A CAB39L Nonsense_Mutation p.R151* 0.05 TCGA-CG-4476-01 13 84454621 84454621 C G SLITRK1 Missense_Mutation p.C341S 0.18 deleterious(0) probably_damaging(0.999) TCGA-CG-4476-01 13 88329122 88329122 C T SLITRK5 Silent p.I493I 0.08 TCGA-CG-4476-01 13 88330443 88330443 G T SLITRK5 Nonsense_Mutation p.E934* 0.18 TCGA-CG-4476-01 14 22386711 22386711 T G TRAV13-2 Missense_Mutation p.I40M 0.19 deleterious(0) benign(0.06) TCGA-CG-4476-01 14 31354979 31354979 C G COCH Intron 0.11 TCGA-CG-4476-01 14 31792845 31792845 T - HEATR5A Frame_Shift_Del p.N1238Tfs*15 0.12 TCGA-CG-4476-01 14 37739664 37739664 A C MIPOL1 Missense_Mutation p.K143Q 0.15 tolerated(0.28) possibly_damaging(0.541) TCGA-CG-4476-01 14 88945666 88945666 G A PTPN21 Silent p.D703D 0.11 TCGA-CG-4476-01 14 94120100 94120100 C T UNC79 Silent p.P1894P 0.10 TCGA-CG-4476-01 14 96789038 96789038 A T ATG2B Missense_Mutation p.S859T 0.22 tolerated(0.14) possibly_damaging(0.878) TCGA-CG-4476-01 15 25425725 25425725 C T SNORD115-6 RNA 0.21 TCGA-CG-4476-01 15 65226358 65226358 A G ANKDD1A Missense_Mutation p.Y264C 0.09 tolerated(0.07) probably_damaging(0.967) TCGA-CG-4476-01 15 81584977 81584977 C G IL16 Missense_Mutation p.R501G 0.09 deleterious(0.01) possibly_damaging(0.876) TCGA-CG-4476-01 16 14947462 14947462 G T NOMO1 Splice_Site p.X291_splice 0.08 TCGA-CG-4476-01 16 21033315 21033315 C T DNAH3 Missense_Mutation p.M1918I 0.24 tolerated(0.07) benign(0.005) TCGA-CG-4476-01 16 24918379 24918379 C T SLC5A11 Missense_Mutation p.A383V 0.20 deleterious(0) probably_damaging(0.977) TCGA-CG-4476-01 16 3647972 3647972 G A SLX4 Missense_Mutation p.R398W 0.05 deleterious(0) probably_damaging(1) TCGA-CG-4476-01 16 47007553 47007553 G A DNAJA2 5'UTR 0.25 TCGA-CG-4476-01 16 7383011 7383011 G A RBFOX1 Silent p.A3A 0.10 TCGA-CG-4476-01 16 747115 747115 C T FBXL16 Silent p.T97T 0.12 TCGA-CG-4476-01 17 10224947 10224947 C G MYH13 Missense_Mutation p.E1005Q 0.30 deleterious(0.01) benign(0.15) TCGA-CG-4476-01 17 41959871 41959871 C T MPP2 Silent p.T154T 0.22 TCGA-CG-4476-01 17 55058576 55058576 G T SCPEP1 Silent p.L70L 0.15 TCGA-CG-4476-01 17 6607272 6607272 G T SLC13A5 Missense_Mutation p.Q158K 0.26 deleterious(0.03) benign(0.276) TCGA-CG-4476-01 17 79517375 79517393 TGCTCAGGGCCCAGCGGGG - C17orf70 Frame_Shift_Del p.T376Sfs*18 0.28 TCGA-CG-4476-01 18 2539062 2539062 C T METTL4 Nonsense_Mutation p.W452* 0.22 TCGA-CG-4476-01 19 11313353 11313353 G C DOCK6 Missense_Mutation p.F1756L 0.33 deleterious(0) possibly_damaging(0.762) TCGA-CG-4476-01 19 12866462 12866462 G A BEST2 Missense_Mutation p.A250T 0.40 tolerated(0.22) benign(0.256) TCGA-CG-4476-01 19 8670006 8670006 C A ADAMTS10 Missense_Mutation p.R109L 0.08 tolerated(0.09) probably_damaging(0.912) TCGA-CG-4476-01 19 8994159 8994159 G T MUC16 Nonsense_Mutation p.C13842* 0.07 TCGA-CG-4476-01 1 110171967 110171967 G A AMPD2 Missense_Mutation p.V627M 0.10 deleterious(0) probably_damaging(0.97) TCGA-CG-4476-01 1 12062117 12062117 C T MFN2 Nonsense_Mutation p.R373* 0.25 TCGA-CG-4476-01 1 149903217 149903217 G A MTMR11 Nonsense_Mutation p.R409* 0.20 TCGA-CG-4476-01 1 156819226 156819226 T C INSRR Missense_Mutation p.N419S 0.30 deleterious(0) probably_damaging(0.995) TCGA-CG-4476-01 1 170521254 170521254 C G GORAB Missense_Mutation p.T279R 0.09 deleterious(0) probably_damaging(0.995) TCGA-CG-4476-01 1 175372750 175372750 G T TNR Missense_Mutation p.Q168K 0.16 tolerated(0.13) benign(0.065) TCGA-CG-4476-01 1 197396612 197396612 T C CRB1 Silent p.D719D 0.08 TCGA-CG-4476-01 1 215793886 215793886 C T KCTD3 Missense_Mutation p.P792S 0.23 tolerated_low_confidence(0.11) possibly_damaging(0.56) TCGA-CG-4476-01 1 218614769 218614769 C T TGFB2 3'UTR 0.27 TCGA-CG-4476-01 1 3701670 3701670 C T LRRC47 Missense_Mutation p.R392Q 0.17 tolerated(0.33) benign(0.023) TCGA-CG-4476-01 1 63128729 63128729 A C DOCK7 Silent p.L37L 0.03 TCGA-CG-4476-01 1 85020805 85020805 G C CTBS Missense_Mutation p.N345K 0.09 tolerated(1) benign(0.002) TCGA-CG-4476-01 1 98058818 98058818 C T DPYD Missense_Mutation p.V362I 0.14 tolerated(0.08) benign(0.029) TCGA-CG-4476-01 20 45239108 45239108 C A SLC13A3 Missense_Mutation p.S173I 0.26 tolerated(0.14) benign(0.016) TCGA-CG-4476-01 21 32492849 32492849 C T TIAM1 Missense_Mutation p.R1538K 0.27 tolerated(1) benign(0) TCGA-CG-4476-01 21 42770928 42770928 G T MX2 Missense_Mutation p.K418N 0.20 deleterious(0) possibly_damaging(0.899) TCGA-CG-4476-01 21 47703695 47703695 A G MCM3AP Missense_Mutation p.L426P 0.26 deleterious(0.03) probably_damaging(0.94) TCGA-CG-4476-01 22 17670888 17670888 G A CECR1 Nonsense_Mutation p.R306* 0.31 TCGA-CG-4476-01 22 22287943 22287943 C T PPM1F Silent p.V189V 0.07 TCGA-CG-4476-01 22 39909957 39909957 C A MIEF1 Missense_Mutation p.L341M 0.22 deleterious(0.02) possibly_damaging(0.77) TCGA-CG-4476-01 2 113940797 113940797 C A PSD4 Missense_Mutation p.P255H 0.07 deleterious_low_confidence(0) probably_damaging(1) TCGA-CG-4476-01 2 120078733 120078733 A G C2orf76 Missense_Mutation p.Y61H 0.07 deleterious(0) probably_damaging(0.991) TCGA-CG-4476-01 2 138373815 138373815 G A THSD7B Missense_Mutation p.C1168Y 0.18 deleterious(0) unknown(0) TCGA-CG-4476-01 2 141660534 141660534 C G LRP1B Missense_Mutation p.E1241Q 0.11 benign(0.403) TCGA-CG-4476-01 2 166755241 166755241 C T TTC21B Missense_Mutation p.E969K 0.14 deleterious(0.02) possibly_damaging(0.472) TCGA-CG-4476-01 2 167060651 167060651 C T SCN9A Missense_Mutation p.V1519I 0.16 tolerated(0.49) benign(0.183) TCGA-CG-4476-01 2 172930411 172930411 G C METAP1D Missense_Mutation p.G143A 0.15 deleterious(0.04) possibly_damaging(0.761) TCGA-CG-4476-01 2 179395550 179395550 T C TTN Silent p.V35264V 0.08 TCGA-CG-4476-01 2 184023068 184023068 A T NUP35 Nonsense_Mutation p.K223* 0.17 TCGA-CG-4476-01 2 32740737 32740740 GACT - BIRC6 Frame_Shift_Del p.T3752Lfs*28 0.35 TCGA-CG-4476-01 2 37229454 37229454 G A HEATR5B Missense_Mutation p.P1771L 0.22 deleterious(0.01) benign(0.206) TCGA-CG-4476-01 2 51254932 51254932 C T NRXN1 Silent p.P160P 0.12 TCGA-CG-4476-01 2 71886083 71886083 G A DYSF Missense_Mutation p.A1611T 0.08 tolerated(0.47) benign(0.016) TCGA-CG-4476-01 2 73115443 73115443 G C SPR Missense_Mutation p.G102A 0.17 tolerated(0.6) benign(0.066) TCGA-CG-4476-01 2 74889902 74889902 G A SEMA4F Missense_Mutation p.R167Q 0.25 deleterious(0) probably_damaging(0.999) TCGA-CG-4476-01 2 97020058 97020058 C A NCAPH Missense_Mutation p.D380E 0.09 tolerated(0.36) benign(0.116) TCGA-CG-4476-01 3 129286351 129286351 C T PLXND1 Missense_Mutation p.R1357H 0.22 deleterious(0) probably_damaging(1) TCGA-CG-4476-01 3 151155443 151155443 A T IGSF10 Missense_Mutation p.N2302K 0.27 deleterious(0) probably_damaging(1) TCGA-CG-4476-01 3 183211985 183211985 C A KLHL6 Missense_Mutation p.R411L 0.06 deleterious(0) probably_damaging(1) TCGA-CG-4476-01 3 36524518 36524518 C A STAC Silent p.A141A 0.08 TCGA-CG-4476-01 3 49065727 49065727 T C IMPDH2 Missense_Mutation p.H93R 0.17 deleterious(0.01) possibly_damaging(0.654) TCGA-CG-4476-01 3 62357828 62357828 G C FEZF2 Missense_Mutation p.P239R 0.35 deleterious(0.04) benign(0.068) TCGA-CG-4476-01 3 98110101 98110101 G C OR5K3 Missense_Mutation p.V198L 0.10 tolerated(0.27) benign(0.006) TCGA-CG-4476-01 4 102751290 102751290 A G BANK1 Silent p.Q132Q 0.04 TCGA-CG-4476-01 4 102984241 102984241 C T BANK1 Nonsense_Mutation p.R720* 0.08 TCGA-CG-4476-01 4 107252898 107252898 G A AIMP1 Missense_Mutation p.R178H 0.12 deleterious(0) probably_damaging(0.98) TCGA-CG-4476-01 4 123268875 123268897 TAAAATCCCCAGCTTCCATAAGA - KIAA1109 Frame_Shift_Del p.S4359Efs*4 0.08 TCGA-CG-4476-01 4 126336957 126336957 T G FAT4 Missense_Mutation p.L2280R 0.11 probably_damaging(0.997) TCGA-CG-4476-01 4 156775288 156775288 A G ASIC5 Missense_Mutation p.Y176H 0.09 tolerated(0.07) benign(0.14) TCGA-CG-4476-01 4 47548832 47548832 G T ATP10D Missense_Mutation p.A530S 0.08 tolerated(0.73) benign(0.021) TCGA-CG-4476-01 4 57204862 57204862 G T AASDH Silent p.I1001I 0.13 TCGA-CG-4476-01 4 6302687 6302687 G A WFS1 Missense_Mutation p.D389N 0.15 deleterious(0.02) probably_damaging(0.918) TCGA-CG-4476-01 5 112174682 112174682 C T APC Nonsense_Mutation p.Q1131* 0.45 TCGA-CG-4476-01 5 112175639 112175639 C T APC Nonsense_Mutation p.R1450* 0.09 TCGA-CG-4476-01 5 140476413 140476413 C T PCDHB2 Missense_Mutation p.P680L 0.09 tolerated_low_confidence(0.12) benign(0.002) TCGA-CG-4476-01 5 141016342 141016342 C T HDAC3 Missense_Mutation p.A6T 0.09 tolerated(0.11) benign(0.046) TCGA-CG-4476-01 5 142661400 142661400 C G NR3C1 3'UTR 0.10 TCGA-CG-4476-01 5 142661418 142661418 C A NR3C1 3'UTR 0.09 TCGA-CG-4476-01 5 142661488 142661488 C G NR3C1 Missense_Mutation p.G768A 0.09 deleterious(0) probably_damaging(0.995) TCGA-CG-4476-01 5 44388473 44388473 C T FGF10 Silent p.E104E 0.21 TCGA-CG-4476-01 5 45353212 45353212 G A HCN1 Missense_Mutation p.P456L 0.10 deleterious(0.02) benign(0.024) TCGA-CG-4476-01 5 71495024 71495024 C T MAP1B Missense_Mutation p.R1948W 0.12 probably_damaging(0.937) TCGA-CG-4476-01 5 79378239 79378239 T C THBS4 Missense_Mutation p.Y899H 0.12 deleterious(0) probably_damaging(0.935) TCGA-CG-4476-01 5 9630190 9630190 A T TAS2R1 5'UTR 0.17 TCGA-CG-4476-01 6 136173107 136173107 C T PDE7B 5'UTR 0.20 TCGA-CG-4476-01 6 27782460 27782460 G T HIST1H2AJ Missense_Mutation p.S20Y 0.19 deleterious_low_confidence(0.02) unknown(0) TCGA-CG-4476-01 6 31130473 31130473 C T TCF19 Silent p.C339C 0.05 TCGA-CG-4476-01 6 31606973 31606973 C A BAG6 Nonsense_Mutation p.E1112* 0.09 TCGA-CG-4476-01 6 31936494 31936496 AGA - SKIV2L In_Frame_Del p.K1035del 0.11 TCGA-CG-4476-01 6 3324180 3324180 C T SLC22A23 Missense_Mutation p.V324M 0.33 tolerated(0.08) benign(0.322) TCGA-CG-4476-01 6 36929321 36929321 G T PI16 Missense_Mutation p.C163F 0.27 deleterious(0) probably_damaging(1) TCGA-CG-4476-01 6 66204978 66204978 G A EYS Missense_Mutation p.T109I 0.07 tolerated_low_confidence(0.35) benign(0.024) TCGA-CG-4476-01 6 75861908 75861908 G C COL12A1 Missense_Mutation p.D1258E 0.14 possibly_damaging(0.469) TCGA-CG-4476-01 6 82925890 82925890 G A IBTK Nonsense_Mutation p.R502* 0.17 TCGA-CG-4476-01 6 85446858 85446858 A T TBX18 Missense_Mutation p.Y457N 0.13 tolerated(0.08) probably_damaging(0.991) TCGA-CG-4476-01 7 127238559 127238559 A T FSCN3 Missense_Mutation p.N344I 0.17 tolerated(0.44) possibly_damaging(0.782) TCGA-CG-4476-01 7 139737608 139737608 C T PARP12 Missense_Mutation p.A411T 0.21 deleterious(0.04) probably_damaging(0.995) TCGA-CG-4476-01 7 149148160 149148160 G A ZNF777 Silent p.R339R 0.21 TCGA-CG-4476-01 7 23000007 23000007 G A FAM126A Missense_Mutation p.P287S 0.05 tolerated(0.11) benign(0.287) TCGA-CG-4476-01 7 33946429 33946429 G A BMPER Splice_Site p.X45_splice 0.06 TCGA-CG-4476-01 7 4056825 4056825 G A SDK1 Missense_Mutation p.G815R 0.09 tolerated(0.19) possibly_damaging(0.708) TCGA-CG-4476-01 7 56087384 56087384 G C PSPH Missense_Mutation p.L62V 0.19 deleterious(0.02) benign(0.154) TCGA-CG-4476-01 7 96651426 96651426 G A DLX5 Intron 0.27 TCGA-CG-4476-01 8 110576743 110576743 G T EBAG9 Silent p.R199R 0.11 TCGA-CG-4476-01 8 36675180 36675180 C T KCNU1 Silent p.V336V 0.09 TCGA-CG-4476-01 8 48824975 48824975 C T PRKDC Missense_Mutation p.D977N 0.13 possibly_damaging(0.657) TCGA-CG-4476-01 8 67786777 67786777 G T MCMDC2 Missense_Mutation p.V81F 0.16 deleterious(0) possibly_damaging(0.526) TCGA-CG-4476-01 8 72123457 72123457 C A EYA1 Missense_Mutation p.R544S 0.07 deleterious(0.02) probably_damaging(0.992) TCGA-CG-4476-01 8 77616929 77616929 G C ZFHX4 Silent p.G202G 0.06 TCGA-CG-4476-01 8 88884993 88884993 C T DCAF4L2 3'UTR 0.17 TCGA-CG-4476-01 9 35711653 35711653 C T TLN1 Missense_Mutation p.R1273Q 0.31 tolerated(0.29) benign(0.094) TCGA-CG-4476-01 X 110496246 110496246 C T CAPN6 Missense_Mutation p.A166T 0.33 deleterious(0) probably_damaging(0.945) TCGA-CG-4476-01 X 1508415 1508415 T C SLC25A6 Missense_Mutation p.H106R 0.13 tolerated(0.93) benign(0) TCGA-CG-4476-01 X 53106025 53106025 C T GPR173 Silent p.V74V 0.26 TCGA-CG-4476-01 X 91133209 91133209 C A PCDH11X Missense_Mutation p.A657D 0.36 deleterious(0) probably_damaging(0.93) TCGA-CG-4477-01 10 101483725 101483725 G A COX15 Silent p.L246L 0.23 TCGA-CG-4477-01 10 103534663 103534664 - AGTT FGF8 Frame_Shift_Ins p.V55Nfs*7 0.33 TCGA-CG-4477-01 10 11060088 11060095 CATGATGG AA CELF2 In_Frame_Del p.D12_V15delinsEI 0.11 TCGA-CG-4477-01 10 118434813 118434813 G A HSPA12A Missense_Mutation p.R503W 0.28 deleterious(0) probably_damaging(0.994) TCGA-CG-4477-01 10 22657513 22657513 A C SPAG6 Silent p.A126A 0.21 TCGA-CG-4477-01 10 67679956 67679956 G A CTNNA3 3'UTR 0.25 TCGA-CG-4477-01 10 70986987 70986988 - GGCT HKDC1 Frame_Shift_Ins p.S32Afs*4 0.26 TCGA-CG-4477-01 11 1469091 1469092 - AGGT BRSK2 Intron 0.14 TCGA-CG-4477-01 11 55339628 55339628 G A OR4C16 Missense_Mutation p.E9K 0.23 deleterious(0.02) benign(0.394) TCGA-CG-4477-01 11 58722252 58722255 GATG - GLYATL1 Frame_Shift_Del p.D97Tfs*23 0.13 TCGA-CG-4477-01 11 62476455 62476456 - C GNG3 3'UTR 0.27 TCGA-CG-4477-01 11 64084278 64084279 - TA TRMT112 3'UTR 0.14 TCGA-CG-4477-01 11 64510268 64510268 A G RASGRP2 Missense_Mutation p.F24S 0.26 deleterious(0) probably_damaging(0.958) TCGA-CG-4477-01 11 65820188 65820189 - AGGT SF3B2 Frame_Shift_Ins 0.18 TCGA-CG-4477-01 11 67399787 67399788 AC - TBX10 Splice_Site p.X290_splice 0.11 TCGA-CG-4477-01 11 73803565 73803566 - C C2CD3 Frame_Shift_Ins p.A1138Gfs*9 0.24 TCGA-CG-4477-01 11 74109136 74109136 T CCCCGGTGTGGTA PGM2L1 In_Frame_Ins p.Q24delinsLPHRG 0.19 TCGA-CG-4477-01 11 77070042 77070042 C G PAK1 Missense_Mutation p.E166D 0.22 tolerated(0.27) benign(0.036) TCGA-CG-4477-01 11 89403629 89403629 G A FOLH1B RNA 0.07 TCGA-CG-4477-01 12 131569149 131569149 G A GPR133 Missense_Mutation p.V538I 0.43 tolerated(0.23) benign(0.008) TCGA-CG-4477-01 12 40619411 40619412 - CTC LRRK2 In_Frame_Ins p.S70dup 0.27 TCGA-CG-4477-01 12 52377884 52377884 A - ACVR1B Frame_Shift_Del p.I346Lfs*32 0.31 TCGA-CG-4477-01 12 57000427 57000428 - TAG BAZ2A In_Frame_Ins p.T729dup 0.20 TCGA-CG-4477-01 12 65564812 65564812 C - LEMD3 Frame_Shift_Del p.T479Mfs*8 0.17 TCGA-CG-4477-01 12 94976263 94976263 C T TMCC3 Missense_Mutation p.G44R 0.22 deleterious(0) probably_damaging(1) TCGA-CG-4477-01 12 97885724 97885728 CAGAG - MIR1251 RNA 0.19 TCGA-CG-4477-01 13 113795276 113795278 GTT A F10 Frame_Shift_Del p.F139Lfs*20 0.27 TCGA-CG-4477-01 14 100608121 100608122 AT C EVL Frame_Shift_Del p.I404Pfs*9 0.23 TCGA-CG-4477-01 14 51202240 51202241 - AGCT NIN Frame_Shift_Ins p.M1958Afs*14 0.15 TCGA-CG-4477-01 15 22383082 22383082 G C OR4N4 Missense_Mutation p.G204R 0.08 deleterious(0) probably_damaging(1) TCGA-CG-4477-01 15 35148890 35148890 A T AQR 3'UTR 0.19 TCGA-CG-4477-01 15 41961471 41961472 - TATC MGA Frame_Shift_Ins p.P129Ifs*5 0.34 TCGA-CG-4477-01 15 45409999 45409999 C - DUOXA1 Frame_Shift_Del p.R389Pfs*94 0.34 TCGA-CG-4477-01 15 63966586 63966587 - CACT HERC1 Frame_Shift_Ins p.V2601Sfs*15 0.24 TCGA-CG-4477-01 15 83349607 83349607 G A AP3B2 Silent p.F251F 0.22 TCGA-CG-4477-01 15 86077059 86077059 C G AKAP13 Missense_Mutation p.H142Q 0.15 deleterious(0) probably_damaging(0.996) TCGA-CG-4477-01 16 1831391 1831391 A G SPSB3 Missense_Mutation p.S32P 0.23 tolerated_low_confidence(0.17) benign(0.002) TCGA-CG-4477-01 16 21655662 21655663 - AGTG IGSF6 Frame_Shift_Ins p.L162Tfs*53 0.10 TCGA-CG-4477-01 16 31143847 31143852 CAGTTA - PRSS8 In_Frame_Del p.N202_C203del 0.31 TCGA-CG-4477-01 16 75654628 75654629 - C ADAT1 Frame_Shift_Ins p.K24Efs*3 0.30 TCGA-CG-4477-01 17 20000065 20000066 - T SPECC1 Frame_Shift_Ins p.S35Ffs*2 0.30 TCGA-CG-4477-01 17 26965392 26965392 C T KIAA0100 Missense_Mutation p.V464I 0.06 tolerated(0.19) benign(0.007) TCGA-CG-4477-01 17 37761740 37761741 GG - NEUROD2 Frame_Shift_Del p.P371Hfs*11 0.22 TCGA-CG-4477-01 17 38560458 38560458 C A TOP2A Missense_Mutation p.K743N 0.26 deleterious(0) probably_damaging(0.987) TCGA-CG-4477-01 17 39503140 39503141 - GC KRT33A Frame_Shift_Ins p.T278Afs*24 0.16 TCGA-CG-4477-01 17 40874825 40874863 GGACTTTCCCATCATAGTTATTGATCAGCTCCTCAATAA - EZH1 In_Frame_Del p.F146_H159delinsY 0.22 TCGA-CG-4477-01 17 42427601 42427601 A - GRN Frame_Shift_Del p.N119Tfs*137 0.27 TCGA-CG-4477-01 17 48776902 48776902 T - ANKRD40 Frame_Shift_Del p.V213* 0.28 TCGA-CG-4477-01 17 57743978 57743978 G - CLTC Frame_Shift_Del p.V641Ffs*11 0.17 TCGA-CG-4477-01 17 7106118 7106119 - G DLG4 Intron 0.44 TCGA-CG-4477-01 17 7578183 7578187 CGGCT - TP53 Frame_Shift_Del p.E221Afs*2 0.30 TCGA-CG-4477-01 17 79220708 79220710 TCC - SLC38A10 In_Frame_Del p.E739del 0.15 TCGA-CG-4477-01 17 80888410 80888411 - C TBCD Frame_Shift_Ins p.Q1003Pfs*5 0.24 TCGA-CG-4477-01 18 25585844 25585844 C A CDH2 Missense_Mutation p.W272C 0.24 deleterious(0) probably_damaging(0.98) TCGA-CG-4477-01 18 60563239 60563240 - CTAA PHLPP1 Frame_Shift_Ins p.R815Tfs*7 0.24 TCGA-CG-4477-01 19 12969492 12969492 C T MAST1 Silent p.V435V 0.05 TCGA-CG-4477-01 19 13255316 13255317 - CAGG STX10 Intron 0.35 TCGA-CG-4477-01 19 13259888 13259889 - ATAT STX10 Frame_Shift_Ins p.M106Ifs*15 0.37 TCGA-CG-4477-01 19 20807373 20807373 G A ZNF626 Missense_Mutation p.S437F 0.04 tolerated(0.57) benign(0.009) TCGA-CG-4477-01 19 2834817 2834817 G A ZNF554 Silent p.A528A 0.26 TCGA-CG-4477-01 19 33647447 33647448 - CA WDR88 Frame_Shift_Ins p.S333Qfs*19 0.11 TCGA-CG-4477-01 19 33870509 33870509 T - CEBPG Frame_Shift_Del p.E124Sfs*40 0.21 TCGA-CG-4477-01 19 47281994 47281994 G T SLC1A5 Missense_Mutation p.N332K 0.34 deleterious(0) probably_damaging(1) TCGA-CG-4477-01 19 50163007 50163007 G A IRF3 Missense_Mutation p.H400Y 0.26 deleterious_low_confidence(0) benign(0.063) TCGA-CG-4477-01 1 111061291 111061291 C T KCNA10 Missense_Mutation p.R40Q 0.16 tolerated_low_confidence(0.31) benign(0.002) TCGA-CG-4477-01 1 114682265 114682265 G A SYT6 Nonsense_Mutation p.Q77* 0.27 TCGA-CG-4477-01 1 11710068 11710069 - GCA FBXO2 In_Frame_Ins p.L151dup 0.09 TCGA-CG-4477-01 1 147230352 147230353 - G GJA5 Frame_Shift_Ins p.R332Pfs*8 0.20 TCGA-CG-4477-01 1 151638446 151638451 TGAATT - SNX27 In_Frame_Del p.V315_Y317delinsD 0.25 TCGA-CG-4477-01 1 156561936 156561937 - ACC APOA1BP In_Frame_Ins p.Y76_Q77insH 0.32 TCGA-CG-4477-01 1 158815551 158815551 G T MNDA Missense_Mutation p.V249L 0.10 tolerated(0.07) benign(0.16) TCGA-CG-4477-01 1 161722918 161722919 - TA DUSP12 Frame_Shift_Ins p.A245* 0.18 TCGA-CG-4477-01 1 201981535 201981536 - C ELF3 Frame_Shift_Ins p.Q151Pfs*10 0.26 TCGA-CG-4477-01 1 22222792 22222792 C - HSPG2 Frame_Shift_Del p.L26* 0.30 TCGA-CG-4477-01 1 226252043 226252046 TCTC - H3F3A 5'UTR 0.19 TCGA-CG-4477-01 1 240966205 240966205 T G RGS7 Missense_Mutation p.K453T 0.04 deleterious(0.01) probably_damaging(0.99) TCGA-CG-4477-01 1 248436538 248436538 G A OR2T33 Silent p.F193F 0.11 TCGA-CG-4477-01 1 36026335 36026336 - C NCDN Frame_Shift_Ins p.L196Pfs*32 0.19 TCGA-CG-4477-01 1 37948822 37948824 CTA - ZC3H12A In_Frame_Del p.Y471del 0.23 TCGA-CG-4477-01 1 46531734 46531734 T - PIK3R3 Frame_Shift_Del p.T205Hfs*7 0.12 TCGA-CG-4477-01 1 6639649 6639650 - G TAS1R1 3'UTR 0.25 TCGA-CG-4477-01 1 76342667 76342680 GTTCCTTGGAAGAC - MSH4 Frame_Shift_Del p.G451Efs*8 0.09 TCGA-CG-4477-01 1 9994876 9994876 C - LZIC Frame_Shift_Del p.V94Sfs*17 0.17 TCGA-CG-4477-01 20 11899738 11899738 G T BTBD3 Missense_Mutation p.A111S 0.28 tolerated(0.3) benign(0.035) TCGA-CG-4477-01 20 11900476 11900476 T A BTBD3 Silent p.A176A 0.19 TCGA-CG-4477-01 20 23029226 23029229 AGGA - THBD Frame_Shift_Del p.S305Tfs*76 0.33 TCGA-CG-4477-01 20 31609144 31609144 C T BPIFB2 Missense_Mutation p.L418F 0.13 tolerated(0.12) benign(0.335) TCGA-CG-4477-01 20 35317145 35317146 - CA NDRG3 Frame_Shift_Ins p.I46* 0.22 TCGA-CG-4477-01 20 35422968 35422968 T C SOGA1 Missense_Mutation p.S1173G 0.27 tolerated(0.21) possibly_damaging(0.888) TCGA-CG-4477-01 20 35555588 35555588 C A SAMHD1 Missense_Mutation p.W231C 0.24 deleterious(0) probably_damaging(0.999) TCGA-CG-4477-01 20 48522189 48522190 - T SPATA2 Frame_Shift_Ins p.S511Vfs*32 0.24 TCGA-CG-4477-01 22 38824167 38824167 G A KCNJ4 5'UTR 0.10 TCGA-CG-4477-01 22 44322942 44322943 TG - PNPLA3 Frame_Shift_Del p.V106Pfs*17 0.09 TCGA-CG-4477-01 22 50436169 50436170 - AACC IL17REL Frame_Shift_Ins p.F274Lfs*142 0.26 TCGA-CG-4477-01 2 10930895 10930895 G C PDIA6 Missense_Mutation p.L217V 0.19 tolerated(0.11) benign(0.206) TCGA-CG-4477-01 2 113331234 113331235 - A POLR1B Frame_Shift_Ins p.S790Kfs*2 0.25 TCGA-CG-4477-01 2 175622707 175622707 C A CHRNA1 Missense_Mutation p.L92F 0.05 tolerated_low_confidence(0.17) benign(0.007) TCGA-CG-4477-01 2 179422480 179422480 T G TTN Missense_Mutation p.K29201Q 0.09 TCGA-CG-4477-01 2 192814949 192814950 - AG TMEFF2 3'UTR 0.18 TCGA-CG-4477-01 2 202626188 202626189 - GGTA ALS2 Frame_Shift_Ins p.G177Yfs*69 0.30 TCGA-CG-4477-01 2 21233527 21233527 G A APOB Silent p.L2071L 0.24 TCGA-CG-4477-01 2 21241934 21241934 G A APOB Silent p.S1017S 0.21 TCGA-CG-4477-01 2 235951699 235951699 C A SH3BP4 Silent p.L762L 0.18 TCGA-CG-4477-01 2 44139618 44139618 T G LRPPRC Missense_Mutation p.L1076F 0.24 deleterious(0.05) benign(0.021) TCGA-CG-4477-01 2 50765393 50765393 C G NRXN1 Missense_Mutation p.R754T 0.22 deleterious(0.03) possibly_damaging(0.895) TCGA-CG-4477-01 2 64321826 64321827 - AAT PELI1 3'UTR 0.28 TCGA-CG-4477-01 2 70377542 70377543 - GGCC C2orf42 Frame_Shift_Ins p.P558Afs*43 0.25 TCGA-CG-4477-01 2 70439846 70439848 CTT - TIA1 3'UTR 0.26 TCGA-CG-4477-01 2 73678808 73678809 - ATT ALMS1 In_Frame_Ins p.I1718dup 0.31 TCGA-CG-4477-01 2 86481815 86481816 AC - REEP1 Splice_Site p.X108_splice 0.27 TCGA-CG-4477-01 3 121207265 121207266 - TAAT POLQ Frame_Shift_Ins p.P1505Ifs*3 0.11 TCGA-CG-4477-01 3 133553468 133553468 C A RAB6B Silent p.A171A 0.19 TCGA-CG-4477-01 3 138189826 138189841 CTCAGGCCTGGACAGC - ESYT3 Frame_Shift_Del p.G568Sfs*3 0.11 TCGA-CG-4477-01 3 149093465 149093466 - C TM4SF1 Splice_Site p.X89_splice 0.28 TCGA-CG-4477-01 3 158364022 158364023 TA - GFM1 Frame_Shift_Del p.I102Sfs*15 0.26 TCGA-CG-4477-01 3 169991093 169991099 ATCAGTC - PRKCI Frame_Shift_Del p.Q205Pfs*10 0.27 TCGA-CG-4477-01 3 37821476 37821477 - ATTT ITGA9 Frame_Shift_Ins p.M920Lfs*100 0.32 TCGA-CG-4477-01 3 47730865 47730876 CTGAATTGTTAC - SMARCC1 Splice_Site p.X421_splice 0.24 TCGA-CG-4477-01 3 48896993 48896993 T A SLC25A20 Silent p.G201G 0.06 TCGA-CG-4477-01 3 9792012 9792016 TACTC - OGG1 Frame_Shift_Del p.T15Sfs*16 0.35 TCGA-CG-4477-01 4 84376861 84376862 - CCCT HELQ 5'UTR 0.41 TCGA-CG-4477-01 5 135692752 135692752 G A TRPC7 Silent p.D108D 0.31 TCGA-CG-4477-01 5 139838894 139838894 A G ANKHD1 Silent p.A542A 0.13 TCGA-CG-4477-01 5 140021540 140021541 - AGCT TMCO6 Frame_Shift_Ins p.S136Afs*11 0.27 TCGA-CG-4477-01 5 140615963 140615963 G A PCDHB18 RNA 0.18 TCGA-CG-4477-01 5 141305001 141305006 GCGGGG - KIAA0141 In_Frame_Del p.G59_G60del 0.46 TCGA-CG-4477-01 5 145651186 145651187 - GTTGGAG RBM27 Frame_Shift_Ins p.F983Wfs*5 0.24 TCGA-CG-4477-01 5 37173906 37173906 G A C5orf42 Missense_Mutation p.S2041L 0.13 deleterious(0) possibly_damaging(0.827) TCGA-CG-4477-01 5 54763747 54763748 - TA PPAP2A Frame_Shift_Ins p.I149Tfs*44 0.22 TCGA-CG-4477-01 5 65465970 65465970 C T SREK1 Missense_Mutation p.R365W 0.26 tolerated(0.12) unknown(0) TCGA-CG-4477-01 6 117645542 117645542 G T ROS1 Missense_Mutation p.T1865N 0.14 tolerated(0.09) benign(0.04) TCGA-CG-4477-01 6 32150159 32150160 - CA AGER Frame_Shift_Ins p.P277Cfs*11 0.27 TCGA-CG-4477-01 6 35443212 35443212 C T TEAD3 Silent p.S365S 0.19 TCGA-CG-4477-01 6 49399501 49399501 A C MUT Silent p.A731A 0.03 TCGA-CG-4477-01 7 103123344 103123345 - C RELN Frame_Shift_Ins p.A3419Gfs*39 0.19 TCGA-CG-4477-01 7 115890233 115890237 ATGCT - TES Frame_Shift_Del p.M129Tfs*28 0.43 TCGA-CG-4477-01 7 48313582 48313582 G A ABCA13 Nonsense_Mutation p.W1440* 0.13 TCGA-CG-4477-01 7 76140366 76140366 A - UPK3B Frame_Shift_Del p.N133Mfs*22 0.15 TCGA-CG-4477-01 7 76140369 76140369 G T UPK3B Missense_Mutation p.A134S 0.17 tolerated_low_confidence(0.07) possibly_damaging(0.447) TCGA-CG-4477-01 8 132980566 132980566 C G EFR3A Missense_Mutation p.Q294E 0.21 tolerated(0.44) benign(0.259) TCGA-CG-4477-01 8 142228731 142228731 G A SLC45A4 Silent p.H285H 0.35 TCGA-CG-4477-01 8 26627606 26627606 C T ADRA1A Intron 0.24 TCGA-CG-4477-01 8 3165968 3165968 C T CSMD1 Missense_Mutation p.R1230H 0.28 possibly_damaging(0.636) TCGA-CG-4477-01 8 36768479 36768479 C T KCNU1 Missense_Mutation p.A788V 0.25 deleterious(0.02) possibly_damaging(0.536) TCGA-CG-4477-01 8 8887408 8887409 - AGC ERI1 In_Frame_Ins p.A306dup 0.20 TCGA-CG-4477-01 8 95705056 95705059 GTCA - ESRP1 Splice_Site p.X657_splice 0.21 TCGA-CG-4477-01 9 110248111 110248112 - GGT KLF4 In_Frame_Ins p.H453dup 0.29 TCGA-CG-4477-01 9 127996395 127996395 C T RABEPK 3'Flank 0.23 TCGA-CG-4477-01 9 129455583 129455583 C T LMX1B Missense_Mutation p.S241L 0.19 deleterious(0) benign(0.378) TCGA-CG-4477-01 9 132375475 132375476 - GCT C9orf50 In_Frame_Ins p.S366dup 0.17 TCGA-CG-4477-01 9 139694875 139694876 - AATG CCDC183 Frame_Shift_Ins p.I160Nfs*31 0.40 TCGA-CG-4477-01 9 14674351 14674352 - A ZDHHC21 5'UTR 0.23 TCGA-CG-4477-01 9 32633408 32633412 TATAA - TAF1L Nonsense_Mutation p.Y722* 0.31 TCGA-CG-4477-01 9 35102749 35102750 - AGT STOML2 In_Frame_Ins p.L39dup 0.35 TCGA-CG-4477-01 9 35957640 35957642 AAT - OR2S2 In_Frame_Del p.I152del 0.35 TCGA-CG-4477-01 9 40702952 40702952 T C SPATA31A3 Silent p.L203L 0.16 TCGA-CG-4477-01 9 95608610 95608610 C G ZNF484 Missense_Mutation p.S822T 0.06 tolerated(0.8) benign(0.007) TCGA-CG-4477-01 9 96030931 96030932 - T WNK2 Frame_Shift_Ins p.I1314Hfs*7 0.19 TCGA-CG-4477-01 X 151424320 151424320 C T GABRA3 Missense_Mutation p.A161T 0.22 tolerated(0.05) probably_damaging(0.997) TCGA-CG-4477-01 X 153762645 153762652 GGACAGCC - G6PD Frame_Shift_Del p.R212Qfs*9 0.38 TCGA-CG-4477-01 X 19560206 19560206 A G SH3KBP1 Missense_Mutation p.S577P 0.15 tolerated(0.24) benign(0.307) TCGA-CG-4477-01 X 24024572 24024572 G C KLHL15 Missense_Mutation p.T80S 0.13 tolerated(0.09) benign(0.061) TCGA-CG-4477-01 X 31152236 31152236 G C DMD Missense_Mutation p.S3666C 0.20 possibly_damaging(0.843) TCGA-CG-4477-01 X 50052274 50052274 T A CCNB3 Missense_Mutation p.F369I 0.14 tolerated(0.1) benign(0.387) TCGA-CG-4477-01 X 66766578 66766579 - T AR Frame_Shift_Ins p.Y531Lfs*21 0.33 TCGA-CG-4477-01 X 73043833 73043833 G C XIST RNA 0.10 TCGA-CG-4477-01 X 77245137 77245137 C T ATP7A Missense_Mutation p.P340L 0.07 deleterious(0) possibly_damaging(0.891) TCGA-CG-4477-01 X 83351320 83351320 C T RPS6KA6 Splice_Site p.X618_splice 0.23 TCGA-CG-5716-01 10 108389086 108389086 C T SORCS1 Missense_Mutation p.V846I 0.07 tolerated(0.1) benign(0.281) TCGA-CG-5716-01 10 55892712 55892712 G T PCDH15 Missense_Mutation p.P614T 0.08 deleterious(0.01) probably_damaging(0.998) TCGA-CG-5716-01 11 107288936 107288936 T C CWF19L2 Missense_Mutation p.E504G 0.06 deleterious(0) probably_damaging(0.996) TCGA-CG-5716-01 11 62398265 62398265 C A GANAB Missense_Mutation p.Q420H 0.11 deleterious(0) probably_damaging(1) TCGA-CG-5716-01 13 36396972 36396972 T C DCLK1 Missense_Mutation p.Y483C 0.11 deleterious(0) possibly_damaging(0.878) TCGA-CG-5716-01 13 60453471 60453471 G T DIAPH3 Missense_Mutation p.S833R 0.08 deleterious(0) probably_damaging(1) TCGA-CG-5716-01 17 30815527 30815527 G T CDK5R1 Missense_Mutation p.D297Y 0.05 deleterious(0) possibly_damaging(0.642) TCGA-CG-5716-01 17 40817732 40817732 C T TUBG2 Missense_Mutation p.R244C 0.06 deleterious(0) probably_damaging(0.982) TCGA-CG-5716-01 19 19655139 19655139 C T CILP2 Silent p.D595D 0.04 TCGA-CG-5716-01 19 6693046 6693046 G A C3 Silent p.I1093I 0.04 TCGA-CG-5716-01 1 182569616 182569616 C T RGS16 Silent p.T140T 0.05 TCGA-CG-5716-01 1 218609423 218609423 A G TGFB2 Missense_Mutation p.Y317C 0.04 deleterious(0.01) probably_damaging(0.995) TCGA-CG-5716-01 22 38151603 38151603 G A TRIOBP Missense_Mutation p.R1875Q 0.06 deleterious(0.01) probably_damaging(0.997) TCGA-CG-5716-01 2 1488414 1488414 C T TPO Missense_Mutation p.A462V 0.08 deleterious(0) possibly_damaging(0.893) TCGA-CG-5716-01 2 56144850 56144850 C T EFEMP1 Missense_Mutation p.R156H 0.04 tolerated(0.08) benign(0.005) TCGA-CG-5716-01 5 115177189 115177189 C G ATG12 Missense_Mutation p.G21R 0.06 tolerated(0.12) benign(0.047) TCGA-CG-5716-01 5 13793818 13793818 C T DNAH5 Missense_Mutation p.R2677Q 0.06 possibly_damaging(0.553) TCGA-CG-5716-01 6 106960219 106960219 G T AIM1 Translation_Start_Site p.M1? 0.10 deleterious(0) possibly_damaging(0.775) TCGA-CG-5716-01 7 111381245 111381245 G A DOCK4 Nonsense_Mutation p.R1640* 0.05 TCGA-CG-5716-01 7 139636047 139636047 A G TBXAS1 Missense_Mutation p.R132G 0.03 deleterious(0) probably_damaging(0.982) TCGA-CG-5716-01 7 150746220 150746220 G A ASIC3 Missense_Mutation p.R83Q 0.04 tolerated(0.66) benign(0.002) TCGA-CG-5716-01 8 12957206 12957206 G C DLC1 Missense_Mutation p.D880E 0.23 deleterious(0) probably_damaging(0.997) TCGA-CG-5716-01 9 135073844 135073844 G A NTNG2 Silent p.T235T 0.11 TCGA-CG-5716-01 X 141291626 141291626 A T MAGEC2 Missense_Mutation p.F50I 0.05 tolerated(0.45) benign(0.002) TCGA-CG-5717-01 10 17730117 17730117 C T STAM Missense_Mutation p.A130V 0.05 deleterious(0) benign(0.293) TCGA-CG-5717-01 10 50857654 50857654 T C CHAT Silent p.L495L 0.08 TCGA-CG-5717-01 10 73050856 73050856 G C UNC5B Silent p.T428T 0.07 TCGA-CG-5717-01 10 93784681 93784681 G A BTAF1 Missense_Mutation p.D1678N 0.07 deleterious(0) probably_damaging(1) TCGA-CG-5717-01 11 132527132 132527132 T C OPCML Missense_Mutation p.I84V 0.06 tolerated(0.77) benign(0.041) TCGA-CG-5717-01 11 34668128 34668128 C G EHF Missense_Mutation p.I102M 0.04 tolerated(1) possibly_damaging(0.819) TCGA-CG-5717-01 11 44105268 44105268 C A ACCS Missense_Mutation p.L478I 0.06 tolerated(0.09) probably_damaging(0.947) TCGA-CG-5717-01 11 48188947 48188947 G A PTPRJ 3'UTR 0.06 TCGA-CG-5717-01 11 55419242 55419242 G T OR4S2 Missense_Mutation p.R288I 0.08 deleterious(0) probably_damaging(0.999) TCGA-CG-5717-01 11 76062596 76062596 T G PRKRIR Missense_Mutation p.E533A 0.05 deleterious(0.01) benign(0.094) TCGA-CG-5717-01 12 102569440 102569440 C G PARPBP Missense_Mutation p.A334G 0.04 deleterious(0) possibly_damaging(0.713) TCGA-CG-5717-01 12 20903616 20903616 C A SLCO1C1 Silent p.I602I 0.05 TCGA-CG-5717-01 12 25656696 25656696 A G IFLTD1 Nonstop_Mutation p.*410Qext*10 0.08 TCGA-CG-5717-01 12 31586079 31586079 G C DENND5B Intron 0.06 TCGA-CG-5717-01 12 4737235 4737235 G A AKAP3 Missense_Mutation p.T278M 0.07 deleterious(0) probably_damaging(0.993) TCGA-CG-5717-01 12 52156331 52156331 A T SCN8A Silent p.I805I 0.05 TCGA-CG-5717-01 12 53666524 53666524 G T ESPL1 Missense_Mutation p.L463F 0.06 deleterious(0) probably_damaging(0.994) TCGA-CG-5717-01 12 55039490 55039490 A G DCD Silent p.P33P 0.04 TCGA-CG-5717-01 12 55641926 55641926 C A OR6C74 Silent p.P285P 0.05 TCGA-CG-5717-01 12 55715240 55715240 T A OR6C1 Missense_Mutation p.F286Y 0.03 deleterious_low_confidence(0.01) probably_damaging(0.911) TCGA-CG-5717-01 12 85438514 85438514 T A LRRIQ1 Missense_Mutation p.V88D 0.05 tolerated(0.06) probably_damaging(0.949) TCGA-CG-5717-01 12 94673350 94673350 A G PLXNC1 Missense_Mutation p.K1234E 0.05 deleterious(0) probably_damaging(1) TCGA-CG-5717-01 12 99640323 99640323 G C ANKS1B Silent p.T692T 0.07 TCGA-CG-5717-01 13 43643111 43643111 C G DNAJC15 Missense_Mutation p.T69R 0.04 tolerated(0.08) benign(0.086) TCGA-CG-5717-01 14 106452670 106452670 C T IGHV1-2 3'Flank 0.06 TCGA-CG-5717-01 14 22509361 22509361 A G TRAV20 Missense_Mutation p.K100R 0.09 deleterious(0.01) benign(0.016) TCGA-CG-5717-01 14 45414529 45414529 T C KLHL28 Silent p.A201A 0.03 TCGA-CG-5717-01 14 55004881 55004881 C G CGRRF1 Missense_Mutation p.S260C 0.06 tolerated(0.08) benign(0.002) TCGA-CG-5717-01 14 55451447 55451447 C G WDHD1 Missense_Mutation p.A634P 0.05 deleterious(0.02) possibly_damaging(0.739) TCGA-CG-5717-01 14 55817527 55817527 C G FBXO34 Missense_Mutation p.S140C 0.09 tolerated(0.08) probably_damaging(0.955) TCGA-CG-5717-01 14 56128189 56128189 G C KTN1 Intron 0.07 TCGA-CG-5717-01 14 58711620 58711620 T C PSMA3 5'UTR 0.05 TCGA-CG-5717-01 14 70235352 70235352 C G SRSF5 Missense_Mutation p.A53G 0.03 deleterious(0) probably_damaging(1) TCGA-CG-5717-01 14 70990979 70990979 T A ADAM20 Missense_Mutation p.T216S 0.04 deleterious(0.03) benign(0.155) TCGA-CG-5717-01 14 76928915 76928915 C G ESRRB Missense_Mutation p.T142S 0.06 tolerated(0.76) benign(0.021) TCGA-CG-5717-01 14 77948847 77948847 T C ISM2 Missense_Mutation p.E264G 0.07 tolerated(0.12) possibly_damaging(0.727) TCGA-CG-5717-01 15 27193231 27193231 G A GABRA5 Missense_Mutation p.E414K 0.07 tolerated(0.17) possibly_damaging(0.543) TCGA-CG-5717-01 15 31795994 31795994 G A OTUD7A Silent p.Y300Y 0.06 TCGA-CG-5717-01 15 40595516 40595516 G A PLCB2 Silent p.R68R 0.08 TCGA-CG-5717-01 16 23388519 23388519 C T SCNN1B Missense_Mutation p.A435V 0.10 tolerated(0.34) benign(0.009) TCGA-CG-5717-01 16 30456419 30456419 C G SEPHS2 Silent p.V210V 0.10 TCGA-CG-5717-01 16 53698873 53698873 C G RPGRIP1L Missense_Mutation p.Q384H 0.09 deleterious(0) probably_damaging(0.971) TCGA-CG-5717-01 16 67236265 67236265 T G ELMO3 Intron 0.09 TCGA-CG-5717-01 17 27944627 27944627 G A CORO6 Missense_Mutation p.A215V 0.18 tolerated(0.26) benign(0.093) TCGA-CG-5717-01 17 3119403 3119403 A G OR1A1 Silent p.T163T 0.04 TCGA-CG-5717-01 17 33520885 33520885 A G SLC35G3 Missense_Mutation p.C148R 0.06 deleterious(0.03) probably_damaging(0.999) TCGA-CG-5717-01 17 34073002 34073002 A T GAS2L2 Missense_Mutation p.I505N 0.04 deleterious(0.03) benign(0.011) TCGA-CG-5717-01 17 74157975 74157975 A G RNF157 Missense_Mutation p.C301R 0.04 deleterious(0) probably_damaging(0.991) TCGA-CG-5717-01 17 7578403 7578403 C A TP53 Missense_Mutation p.C176F 0.09 deleterious(0) probably_damaging(0.993) TCGA-CG-5717-01 18 10471557 10471557 C A APCDD1 Silent p.I91I 0.09 TCGA-CG-5717-01 18 61378588 61378588 C A SERPINB11 Missense_Mutation p.T63N 0.04 tolerated(0.11) benign(0.104) TCGA-CG-5717-01 19 15073090 15073090 G A SLC1A6 Missense_Mutation p.P220L 0.06 tolerated(0.64) benign(0) TCGA-CG-5717-01 19 33579069 33579069 C T GPATCH1 Nonsense_Mutation p.Q35* 0.08 TCGA-CG-5717-01 19 34710403 34710403 G C LSM14A Missense_Mutation p.D297H 0.03 deleterious(0) probably_damaging(1) TCGA-CG-5717-01 19 34949798 34949798 A C UBA2 Missense_Mutation p.H457P 0.05 tolerated(0.15) benign(0.084) TCGA-CG-5717-01 19 37369066 37369066 A C ZNF345 Missense_Mutation p.Q445P 0.04 deleterious(0) possibly_damaging(0.899) TCGA-CG-5717-01 19 4236942 4236942 A T EBI3 Missense_Mutation p.I183F 0.07 tolerated(0.18) benign(0.06) TCGA-CG-5717-01 19 44585178 44585178 C T ZNF284 Missense_Mutation p.T9I 0.05 deleterious(0) probably_damaging(0.995) TCGA-CG-5717-01 19 48342695 48342695 C T CRX Missense_Mutation p.S124F 0.09 tolerated(0.11) benign(0.104) TCGA-CG-5717-01 19 49244646 49244646 G T IZUMO1 Missense_Mutation p.P282T 0.10 tolerated(0.3) benign(0.014) TCGA-CG-5717-01 19 49391498 49391498 C T TULP2 Silent p.K219K 0.06 TCGA-CG-5717-01 19 50210790 50210790 C T CPT1C Silent p.S453S 0.05 TCGA-CG-5717-01 19 55401300 55401300 G A FCAR 3'UTR 0.08 TCGA-CG-5717-01 19 56538777 56538777 G C NLRP5 Missense_Mutation p.S393T 0.10 deleterious(0.01) probably_damaging(0.992) TCGA-CG-5717-01 19 56953014 56953014 T G ZNF667 Missense_Mutation p.K450N 0.07 deleterious(0) probably_damaging(0.997) TCGA-CG-5717-01 19 9015743 9015743 C A MUC16 Missense_Mutation p.A12694S 0.04 benign(0.136) TCGA-CG-5717-01 19 9325461 9325461 G C OR7D4 Nonsense_Mutation p.S18* 0.06 TCGA-CG-5717-01 1 109870198 109870198 T C SORT1 Missense_Mutation p.Y466C 0.05 deleterious(0) probably_damaging(0.972) TCGA-CG-5717-01 1 114357554 114357554 C A PTPN22 Missense_Mutation p.R799S 0.04 deleterious(0) probably_damaging(1) TCGA-CG-5717-01 1 114357555 114357555 C A PTPN22 Missense_Mutation p.R799M 0.04 deleterious(0) probably_damaging(1) TCGA-CG-5717-01 1 150680760 150680760 C T HORMAD1 Silent p.L173L 0.04 TCGA-CG-5717-01 1 151010070 151010070 A G BNIPL Silent p.E23E 0.14 TCGA-CG-5717-01 1 151680269 151680269 G T CELF3 Missense_Mutation p.A210D 0.16 deleterious(0.02) benign(0.342) TCGA-CG-5717-01 1 154493818 154493818 G A TDRD10 Missense_Mutation p.G78S 0.10 tolerated(0.16) possibly_damaging(0.672) TCGA-CG-5717-01 1 155295028 155295028 G T RUSC1 Intron 0.13 TCGA-CG-5717-01 1 155450973 155450973 G C ASH1L Missense_Mutation p.S563C 0.08 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CG-5717-01 1 160461007 160461007 G T SLAMF6 Missense_Mutation p.P185H 0.05 deleterious(0) probably_damaging(0.96) TCGA-CG-5717-01 1 167042757 167042757 G A GPA33 Silent p.A21A 0.16 TCGA-CG-5717-01 1 169511446 169511446 T G F5 Missense_Mutation p.D961A 0.03 tolerated(0.16) benign(0.02) TCGA-CG-5717-01 1 197886867 197886867 C A LHX9 5'UTR 0.06 TCGA-CG-5717-01 1 206665007 206665007 G T IKBKE Missense_Mutation p.R587I 0.03 deleterious(0) possibly_damaging(0.836) TCGA-CG-5717-01 1 228404967 228404967 G A OBSCN Silent p.V877V 0.11 TCGA-CG-5717-01 1 237060413 237060413 G C MTR Missense_Mutation p.D1236H 0.05 deleterious(0) probably_damaging(0.918) TCGA-CG-5717-01 1 60331609 60331609 G A HOOK1 Missense_Mutation p.E604K 0.05 deleterious(0.03) possibly_damaging(0.699) TCGA-CG-5717-01 1 6202355 6202356 GC - CHD5 Frame_Shift_Del p.S759Hfs*10 0.08 TCGA-CG-5717-01 1 87029424 87029424 G A CLCA4 Missense_Mutation p.A177T 0.06 tolerated(0.18) possibly_damaging(0.507) TCGA-CG-5717-01 1 89843764 89843764 C A GBP6 Missense_Mutation p.Q141K 0.04 tolerated(0.1) benign(0.145) TCGA-CG-5717-01 20 34144072 34144072 C G ERGIC3 Intron 0.12 TCGA-CG-5717-01 20 34430649 34430649 G A PHF20 Missense_Mutation p.E80K 0.07 deleterious(0.02) benign(0.06) TCGA-CG-5717-01 20 3686499 3686499 C A SIGLEC1 Nonsense_Mutation p.E200* 0.04 TCGA-CG-5717-01 20 3765196 3765196 G A CENPB 3'UTR 0.22 TCGA-CG-5717-01 20 3842020 3842020 C G MAVS Missense_Mutation p.L112V 0.25 tolerated(1) benign(0.002) TCGA-CG-5717-01 20 46300954 46300955 - T SULF2 Frame_Shift_Ins p.L522Tfs*34 0.11 TCGA-CG-5717-01 20 4680317 4680317 C T PRNP Missense_Mutation p.R151C 0.34 deleterious(0.03) benign(0.076) TCGA-CG-5717-01 20 62703649 62703649 G A TCEA2 3'UTR 0.07 TCGA-CG-5717-01 21 43645878 43645878 A C ABCG1 Missense_Mutation p.D47A 0.04 tolerated(0.2) benign(0.001) TCGA-CG-5717-01 22 20112860 20112860 G C RANBP1 Missense_Mutation p.A114P 0.05 deleterious(0.01) possibly_damaging(0.717) TCGA-CG-5717-01 22 37872993 37872993 A T MFNG Silent p.T196T 0.15 TCGA-CG-5717-01 22 39884750 39884750 C T MGAT3 Silent p.D466D 0.12 TCGA-CG-5717-01 2 158634764 158634764 A T ACVR1 Missense_Mutation p.L141Q 0.06 tolerated(0.06) possibly_damaging(0.553) TCGA-CG-5717-01 2 179597039 179597039 G A TTN Nonsense_Mutation p.Q5553* 0.07 TCGA-CG-5717-01 2 201485506 201485506 C A AOX1 Missense_Mutation p.T613N 0.05 deleterious(0.02) benign(0.281) TCGA-CG-5717-01 2 204003442 204003442 C G NBEAL1 Missense_Mutation p.L1578V 0.03 tolerated(0.16) probably_damaging(0.997) TCGA-CG-5717-01 2 239181794 239181794 C T PER2 Missense_Mutation p.G163S 0.09 tolerated(1) benign(0.001) TCGA-CG-5717-01 2 27424276 27424276 G T SLC5A6 Nonsense_Mutation p.Y530* 0.09 TCGA-CG-5717-01 2 27888079 27888079 A T SLC4A1AP Missense_Mutation p.D313V 0.06 deleterious(0) benign(0.354) TCGA-CG-5717-01 2 3730541 3730541 G C ALLC Missense_Mutation p.D130H 0.05 tolerated(0.17) benign(0.055) TCGA-CG-5717-01 2 44513062 44513062 C G SLC3A1 Intron 0.10 TCGA-CG-5717-01 2 71206308 71206308 C T ANKRD53 Silent p.T84T 0.07 TCGA-CG-5717-01 2 74154045 74154045 C T DGUOK Missense_Mutation p.A3V 0.07 tolerated_low_confidence(0.4) benign(0.005) TCGA-CG-5717-01 2 79313512 79313512 C A REG1B Missense_Mutation p.G101V 0.04 deleterious(0) probably_damaging(0.995) TCGA-CG-5717-01 3 122631107 122631107 G A SEMA5B Silent p.S990S 0.11 TCGA-CG-5717-01 3 133374275 133374275 G C TOPBP1 Missense_Mutation p.L201V 0.08 tolerated(0.11) benign(0.073) TCGA-CG-5717-01 3 154146753 154146753 A G GPR149 Missense_Mutation p.C218R 0.08 deleterious(0) probably_damaging(0.972) TCGA-CG-5717-01 3 155203145 155203145 C G PLCH1 Missense_Mutation p.A1000P 0.05 deleterious_low_confidence(0) benign(0.397) TCGA-CG-5717-01 3 164733853 164733853 C G SI Missense_Mutation p.D1259H 0.08 deleterious(0) probably_damaging(0.999) TCGA-CG-5717-01 4 187540371 187540371 G T FAT1 Missense_Mutation p.L2457M 0.04 possibly_damaging(0.491) TCGA-CG-5717-01 4 42416720 42416720 C T ATP8A1 Silent p.A1107A 0.07 TCGA-CG-5717-01 4 48524956 48524956 C T FRYL Missense_Mutation p.A2495T 0.04 tolerated(0.58) benign(0.097) TCGA-CG-5717-01 5 110411751 110411751 A T TSLP Silent p.R153R 0.04 TCGA-CG-5717-01 5 121786900 121786900 T C SNCAIP Silent p.T786T 0.06 TCGA-CG-5717-01 5 138264953 138264966 GACTCTGACTTTGA - CTNNA1 Frame_Shift_Del p.S641Rfs*4 0.10 TCGA-CG-5717-01 5 176070195 176070195 T G EIF4E1B Missense_Mutation p.L43R 0.09 tolerated(0.87) benign(0.004) TCGA-CG-5717-01 5 176070196 176070196 G C EIF4E1B Silent p.L43L 0.09 TCGA-CG-5717-01 5 52206033 52206033 G C ITGA1 Missense_Mutation p.Q547H 0.05 deleterious(0) possibly_damaging(0.897) TCGA-CG-5717-01 5 68595886 68595886 T A CCDC125 Missense_Mutation p.N257Y 0.07 deleterious(0) possibly_damaging(0.865) TCGA-CG-5717-01 5 9197366 9197366 C T SEMA5A Missense_Mutation p.A328T 0.07 tolerated(0.86) benign(0.001) TCGA-CG-5717-01 6 116289790 116289790 G A FRK Silent p.Y193Y 0.04 TCGA-CG-5717-01 6 121768767 121768767 A G GJA1 Silent p.K258K 0.09 TCGA-CG-5717-01 6 166778941 166778941 C T MPC1 Silent p.E102E 0.09 TCGA-CG-5717-01 6 26250489 26250489 G C HIST1H3F Silent p.A115A 0.03 TCGA-CG-5717-01 6 26468955 26468955 G C BTN2A1 3'UTR 0.05 TCGA-CG-5717-01 6 27115020 27115020 G A HIST1H2AH Missense_Mutation p.G38D 0.05 deleterious_low_confidence(0.03) possibly_damaging(0.779) TCGA-CG-5717-01 6 28963343 28963343 G T ZNF311 Missense_Mutation p.A479D 0.08 deleterious(0) probably_damaging(0.971) TCGA-CG-5717-01 6 34802057 34802057 C G UHRF1BP1 Missense_Mutation p.I134M 0.06 deleterious(0) possibly_damaging(0.86) TCGA-CG-5717-01 6 46787351 46787351 G A MEP1A Missense_Mutation p.E156K 0.04 deleterious(0) probably_damaging(0.999) TCGA-CG-5717-01 6 46996775 46996775 A G GPR110 Missense_Mutation p.L8P 0.05 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-CG-5717-01 6 52550899 52550899 G C TMEM14A 3'UTR 0.07 TCGA-CG-5717-01 6 56918083 56918083 T G KIAA1586 Silent p.P262P 0.09 TCGA-CG-5717-01 6 64410247 64410247 T A PHF3 Missense_Mutation p.F997Y 0.10 tolerated(0.12) probably_damaging(0.912) TCGA-CG-5717-01 6 7845400 7845400 G A BMP6 Missense_Mutation p.R231H 0.06 tolerated(0.42) benign(0.016) TCGA-CG-5717-01 7 100187902 100187902 A G FBXO24 Missense_Mutation p.I120V 0.09 tolerated_low_confidence(0.16) benign(0.112) TCGA-CG-5717-01 7 100677750 100677750 C G MUC17 Missense_Mutation p.T1018S 0.05 benign(0.243) TCGA-CG-5717-01 7 103004686 103004686 G C PSMC2 Missense_Mutation p.A230P 0.05 deleterious(0) probably_damaging(1) TCGA-CG-5717-01 7 122338599 122338599 C T RNF133 Missense_Mutation p.S125N 0.06 tolerated(0.45) benign(0.005) TCGA-CG-5717-01 7 143806809 143806809 T G OR2A2 Missense_Mutation p.F45C 0.02 deleterious(0.01) possibly_damaging(0.663) TCGA-CG-5717-01 7 3991461 3991461 G A SDK1 Silent p.T353T 0.12 TCGA-CG-5717-01 7 81372127 81372127 G C HGF Intron 0.20 TCGA-CG-5717-01 7 92733244 92733244 C G SAMD9 Missense_Mutation p.D723H 0.04 tolerated(0.09) benign(0.011) TCGA-CG-5717-01 7 98546232 98546232 G A TRRAP Missense_Mutation p.R1564Q 0.05 probably_damaging(0.975) TCGA-CG-5717-01 7 99453307 99453307 G A CYP3A43 Missense_Mutation p.R255K 0.06 tolerated(1) benign(0.001) TCGA-CG-5717-01 8 103663556 103663556 C T KLF10 Missense_Mutation p.S335N 0.08 tolerated(0.06) possibly_damaging(0.772) TCGA-CG-5717-01 8 21856712 21856712 T A XPO7 Missense_Mutation p.Y847N 0.06 deleterious(0) probably_damaging(0.996) TCGA-CG-5717-01 8 21856729 21856729 C G XPO7 Silent p.V852V 0.06 TCGA-CG-5717-01 8 42611877 42611877 C G CHRNA6 Missense_Mutation p.K155N 0.03 deleterious(0.01) probably_damaging(1) TCGA-CG-5717-01 8 43173685 43173685 T C POTEA RNA 0.07 TCGA-CG-5717-01 8 61192289 61192289 T C CA8 Missense_Mutation p.N84S 0.16 deleterious(0) probably_damaging(1) TCGA-CG-5717-01 8 75898238 75898238 C T CRISPLD1 Missense_Mutation p.R6W 0.13 tolerated(0.18) benign(0.153) TCGA-CG-5717-01 8 77690516 77690516 A G ZFHX4 Missense_Mutation p.T1056A 0.04 benign(0.001) TCGA-CG-5717-01 9 114462308 114462308 T C C9orf84 Missense_Mutation p.T973A 0.04 tolerated(0.06) possibly_damaging(0.496) TCGA-CG-5717-01 9 94488878 94488878 A G ROR2 Missense_Mutation p.L444P 0.04 tolerated(0.37) benign(0.005) TCGA-CG-5717-01 X 10535579 10535579 T C MID1 Silent p.T3T 0.14 TCGA-CG-5717-01 X 112058613 112058629 GCATCCTTCCAACTCTT - AMOT Frame_Shift_Del p.Q450Lfs*2 0.10 TCGA-CG-5717-01 X 119387473 119387473 T C ZBTB33 Missense_Mutation p.V68A 0.11 deleterious(0) possibly_damaging(0.781) TCGA-CG-5717-01 X 131540373 131540373 G T MBNL3 Missense_Mutation p.H75Q 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-CG-5717-01 X 139866570 139866570 C T CDR1 5'UTR 0.12 TCGA-CG-5717-01 X 151092840 151092840 G A MAGEA4 Missense_Mutation p.R235K 0.17 tolerated(0.38) benign(0.009) TCGA-CG-5717-01 X 54324757 54324757 C G WNK3 Missense_Mutation p.E417Q 0.16 deleterious(0) probably_damaging(0.999) TCGA-CG-5718-01 10 104809484 104809484 G A CNNM2 Missense_Mutation p.V548M 0.30 deleterious(0.01) possibly_damaging(0.783) TCGA-CG-5718-01 10 111860438 111860438 G A ADD3 Silent p.V9V 0.18 TCGA-CG-5718-01 10 24874724 24874724 C T ARHGAP21 Silent p.T1498T 0.27 TCGA-CG-5718-01 11 11400736 11400736 C T GALNT18 Missense_Mutation p.R224H 0.30 deleterious(0.03) benign(0.033) TCGA-CG-5718-01 11 26586967 26586967 C T MUC15 Missense_Mutation p.E174K 0.25 deleterious_low_confidence(0.01) benign(0.032) TCGA-CG-5718-01 11 30033281 30033281 C T KCNA4 Silent p.L315L 0.23 TCGA-CG-5718-01 11 4661733 4661733 T C OR51D1 Missense_Mutation p.V238A 0.22 deleterious(0.04) possibly_damaging(0.524) TCGA-CG-5718-01 11 76956374 76956374 G A GDPD4 Silent p.V346V 0.28 TCGA-CG-5718-01 12 70824482 70824482 G A KCNMB4 3'UTR 0.11 TCGA-CG-5718-01 12 75816820 75816820 A - GLIPR1L2 Intron 0.24 TCGA-CG-5718-01 12 83526052 83526052 G A TMTC2 Missense_Mutation p.E799K 0.26 deleterious(0.02) probably_damaging(0.989) TCGA-CG-5718-01 12 85408260 85408260 C T TSPAN19 3'UTR 0.23 TCGA-CG-5718-01 12 9222365 9222365 G T A2M Missense_Mutation p.N1413K 0.22 deleterious(0.01) benign(0.435) TCGA-CG-5718-01 14 103434850 103434850 G A CDC42BPB Silent p.I733I 0.25 TCGA-CG-5718-01 14 106236817 106236817 C T IGHG3 Splice_Site p.X130_splice 0.52 TCGA-CG-5718-01 14 21167713 21167713 G A RNASE4 Silent p.K61K 0.16 TCGA-CG-5718-01 14 31598579 31598579 T C HECTD1 Missense_Mutation p.K1333R 0.62 tolerated(0.27) benign(0.134) TCGA-CG-5718-01 14 72152300 72152300 C A SIPA1L1 Missense_Mutation p.A1109D 0.54 deleterious(0.01) benign(0.018) TCGA-CG-5718-01 15 25963546 25963546 G A ATP10A Missense_Mutation p.A455V 0.21 deleterious(0.02) probably_damaging(0.951) TCGA-CG-5718-01 15 77473569 77473569 C T PEAK1 Missense_Mutation p.E234K 0.28 tolerated(0.11) benign(0.154) TCGA-CG-5718-01 16 1129842 1129842 C T SSTR5 Missense_Mutation p.S325F 0.27 tolerated(0.06) benign(0.013) TCGA-CG-5718-01 16 14345840 14345840 C T MKL2 Missense_Mutation p.P792L 0.22 deleterious(0.01) benign(0.3) TCGA-CG-5718-01 16 18828719 18828719 T C SMG1 Missense_Mutation p.D3323G 0.40 deleterious(0.01) probably_damaging(0.984) TCGA-CG-5718-01 17 27958032 27958032 T G SSH2 Missense_Mutation p.S1367R 0.06 tolerated_low_confidence(0.09) benign(0.027) TCGA-CG-5718-01 17 68171975 68171975 C T KCNJ2 Silent p.S265S 0.21 TCGA-CG-5718-01 17 73499201 73499201 C G CASKIN2 Missense_Mutation p.E652Q 0.40 tolerated(0.08) probably_damaging(0.968) TCGA-CG-5718-01 17 7578556 7578556 T C TP53 Splice_Site p.X126_splice 0.51 TCGA-CG-5718-01 17 7797156 7797156 G A CHD3 Missense_Mutation p.R335Q 0.23 benign(0.124) TCGA-CG-5718-01 18 10681657 10681657 C T PIEZO2 Splice_Site p.X2480_splice 0.27 TCGA-CG-5718-01 18 13825858 13825858 C A MC5R Missense_Mutation p.P32T 0.30 tolerated(0.44) benign(0.154) TCGA-CG-5718-01 18 43510778 43510778 T A EPG5 Missense_Mutation p.N759I 0.57 tolerated(0.05) benign(0.375) TCGA-CG-5718-01 19 35836516 35836516 C T CD22 Silent p.A740A 0.26 TCGA-CG-5718-01 19 54818815 54818815 G A LILRA5 Silent p.Y261Y 0.16 TCGA-CG-5718-01 19 57724120 57724120 C T ZNF264 Missense_Mutation p.S552L 0.26 tolerated(0.12) possibly_damaging(0.803) TCGA-CG-5718-01 19 7977035 7977035 C T MAP2K7 Missense_Mutation p.L361F 0.06 deleterious(0) probably_damaging(0.997) TCGA-CG-5718-01 1 120906195 120906195 C A RP11-439A17.4 5'Flank 0.19 TCGA-CG-5718-01 1 12638806 12638806 C T DHRS3 Missense_Mutation p.S213N 0.26 tolerated(0.19) benign(0) TCGA-CG-5718-01 1 145301732 145301732 G A NBPF10 Missense_Mutation p.C334Y 0.07 probably_damaging(0.916) TCGA-CG-5718-01 1 152060620 152060620 C T TCHHL1 5'UTR 0.21 TCGA-CG-5718-01 1 152190595 152190595 G A HRNR Silent p.H1170H 0.62 TCGA-CG-5718-01 1 168153206 168153206 C G TIPRL Missense_Mutation p.I57M 0.03 deleterious(0) possibly_damaging(0.897) TCGA-CG-5718-01 1 196398783 196398783 A G KCNT2 Missense_Mutation p.V248A 0.24 deleterious(0) possibly_damaging(0.872) TCGA-CG-5718-01 1 196887428 196887428 G A CFHR4 Silent p.G542G 0.41 TCGA-CG-5718-01 1 198703498 198703498 T C PTPRC Missense_Mutation p.W741R 0.18 deleterious(0) probably_damaging(1) TCGA-CG-5718-01 1 22922618 22922618 G A EPHA8 Missense_Mutation p.A573T 0.26 tolerated(0.13) possibly_damaging(0.587) TCGA-CG-5718-01 1 2938675 2938675 C A ACTRT2 Missense_Mutation p.A142E 0.29 deleterious(0) probably_damaging(0.991) TCGA-CG-5718-01 1 32207043 32207043 G A BAI2 Silent p.G575G 0.36 TCGA-CG-5718-01 1 6189111 6189111 G A CHD5 Missense_Mutation p.R1136C 0.22 deleterious(0) probably_damaging(0.998) TCGA-CG-5718-01 20 10389282 10389282 C T MKKS Silent p.E385E 0.22 TCGA-CG-5718-01 20 17446060 17446060 G A PCSK2 Missense_Mutation p.R431H 0.23 tolerated(0.39) probably_damaging(0.964) TCGA-CG-5718-01 20 44506535 44506535 G A ZSWIM3 Silent p.P446P 0.19 TCGA-CG-5718-01 21 34042633 34042633 C T SYNJ1 Missense_Mutation p.M631I 0.25 tolerated(0.34) probably_damaging(0.997) TCGA-CG-5718-01 21 38494156 38494156 G A TTC3 Missense_Mutation p.E314K 0.27 tolerated(0.06) possibly_damaging(0.562) TCGA-CG-5718-01 22 32587233 32587233 G A RFPL2 Silent p.A221A 0.17 TCGA-CG-5718-01 22 40711358 40711358 A G TNRC6B Missense_Mutation p.K1584E 0.31 tolerated(1) possibly_damaging(0.809) TCGA-CG-5718-01 22 46125373 46125373 C G ATXN10 Missense_Mutation p.P266R 0.20 tolerated(0.45) benign(0.058) TCGA-CG-5718-01 2 1437238 1437238 C A TPO Missense_Mutation p.P70T 0.49 deleterious(0) possibly_damaging(0.855) TCGA-CG-5718-01 2 21238075 21238076 - T APOB Frame_Shift_Ins p.M1189Nfs*14 0.20 TCGA-CG-5718-01 2 231775023 231775023 C A GPR55 Missense_Mutation p.V219L 0.47 tolerated(0.17) benign(0.068) TCGA-CG-5718-01 2 32715111 32715111 C G BIRC6 Nonsense_Mutation p.S2700* 0.25 TCGA-CG-5718-01 2 37321291 37321291 G A GPATCH11 Missense_Mutation p.E199K 0.36 tolerated(0.28) benign(0.014) TCGA-CG-5718-01 2 45170028 45170028 G A SIX3 Missense_Mutation p.R262H 0.55 deleterious(0) probably_damaging(1) TCGA-CG-5718-01 2 66739342 66739342 G A MEIS1 Silent p.K268K 0.37 TCGA-CG-5718-01 2 84670454 84670454 C T SUCLG1 Missense_Mutation p.G91E 0.22 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-CG-5718-01 2 99008435 99008435 T A CNGA3 Splice_Site p.X225_splice 0.35 TCGA-CG-5718-01 3 105266363 105266363 A G ALCAM Missense_Mutation p.N457S 0.22 tolerated_low_confidence(0.1) benign(0.117) TCGA-CG-5718-01 3 119118073 119118073 A T ARHGAP31 Missense_Mutation p.K345I 0.27 deleterious(0) probably_damaging(0.999) TCGA-CG-5718-01 3 137822729 137822729 G A DZIP1L Missense_Mutation p.R29C 0.32 deleterious(0) probably_damaging(1) TCGA-CG-5718-01 3 157160877 157160880 GAAA - PTX3 3'UTR 0.27 TCGA-CG-5718-01 3 3078938 3078938 G A CNTN4 Missense_Mutation p.R673H 0.32 deleterious(0) probably_damaging(1) TCGA-CG-5718-01 3 46401459 46401459 A - CCR2 3'UTR 0.29 TCGA-CG-5718-01 3 46937225 46937225 C G PTH1R Missense_Mutation p.A60G 0.16 tolerated(0.27) benign(0.001) TCGA-CG-5718-01 3 46937234 46937234 T G PTH1R Missense_Mutation p.M63R 0.15 tolerated(0.28) benign(0) TCGA-CG-5718-01 3 4744539 4744539 T C ITPR1 Missense_Mutation p.L1506P 0.19 deleterious(0) probably_damaging(0.999) TCGA-CG-5718-01 4 185689562 185689562 C G ACSL1 Missense_Mutation p.G346R 0.25 deleterious(0.02) probably_damaging(0.996) TCGA-CG-5718-01 4 20530620 20530620 T A SLIT2 Missense_Mutation p.L504Q 0.07 tolerated(0.64) probably_damaging(0.999) TCGA-CG-5718-01 4 69179894 69179894 G A YTHDC1 Missense_Mutation p.R703C 0.18 deleterious_low_confidence(0) unknown(0) TCGA-CG-5718-01 4 87098 87098 A G Z95704.2 RNA 0.20 TCGA-CG-5718-01 5 112170788 112170788 T - APC Frame_Shift_Del p.L629* 0.31 TCGA-CG-5718-01 5 140755889 140755889 C T PCDHGA6 Missense_Mutation p.R747W 0.34 deleterious_low_confidence(0) benign(0.068) TCGA-CG-5718-01 5 150275535 150275535 G A ZNF300 Silent p.S438S 0.33 TCGA-CG-5718-01 5 7521010 7521010 C A ADCY2 Missense_Mutation p.Q190K 0.11 deleterious(0.05) possibly_damaging(0.489) TCGA-CG-5718-01 5 80641711 80641711 G T ACOT12 Missense_Mutation p.Q256K 0.42 tolerated(0.89) possibly_damaging(0.619) TCGA-CG-5718-01 6 142409812 142409812 G T NMBR 5'UTR 0.29 TCGA-CG-5718-01 6 146678789 146678789 C T GRM1 Missense_Mutation p.R521W 0.27 deleterious(0) probably_damaging(0.973) TCGA-CG-5718-01 6 152652266 152652266 G A SYNE1 Silent p.R4518R 0.25 TCGA-CG-5718-01 6 152748759 152748759 T G SYNE1 Intron 0.57 TCGA-CG-5718-01 6 28294157 28294157 G A ZSCAN31 Missense_Mutation p.S336L 0.27 deleterious(0) possibly_damaging(0.816) TCGA-CG-5718-01 6 29394891 29394891 G T OR11A1 Missense_Mutation p.D176E 0.34 deleterious(0.03) possibly_damaging(0.856) TCGA-CG-5718-01 6 29692871 29692871 G T HLA-F Missense_Mutation p.W225L 0.35 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-CG-5718-01 6 29911302 29911302 G A HLA-A Missense_Mutation p.E201K 0.13 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-CG-5718-01 6 51907736 51907736 G A PKHD1 Silent p.I1006I 0.42 TCGA-CG-5718-01 7 103141292 103141292 C A RELN Missense_Mutation p.C2856F 0.21 deleterious(0) benign(0.062) TCGA-CG-5718-01 7 140034937 140034937 G A SLC37A3 3'UTR 0.33 TCGA-CG-5718-01 7 20198397 20198397 A T MACC1 Silent p.S529S 0.21 TCGA-CG-5718-01 7 45931540 45931540 C T IGFBP1 Nonsense_Mutation p.R177* 0.13 TCGA-CG-5718-01 7 75517437 75517437 G A RHBDD2 Missense_Mutation p.G289R 0.22 tolerated(0.08) benign(0.224) TCGA-CG-5718-01 7 82584541 82584541 C A PCLO Missense_Mutation p.A1910S 0.18 unknown(0) TCGA-CG-5718-01 7 82784814 82784814 A C PCLO Silent p.P381P 0.20 TCGA-CG-5718-01 7 97800978 97800978 C T LMTK2 Silent p.F261F 0.16 TCGA-CG-5718-01 8 136659387 136659387 T A KHDRBS3 3'UTR 0.16 TCGA-CG-5718-01 8 22874894 22874894 G A RHOBTB2 Missense_Mutation p.R721Q 0.54 tolerated(0.11) probably_damaging(0.95) TCGA-CG-5718-01 9 137007762 137007762 A G WDR5 Missense_Mutation p.D150G 0.21 deleterious(0) probably_damaging(1) TCGA-CG-5718-01 9 43626810 43626810 G A SPATA31A6 Missense_Mutation p.S626L 0.32 tolerated(1) benign(0.006) TCGA-CG-5718-01 9 894128 894128 C T DMRT1 Missense_Mutation p.P252L 0.39 deleterious(0) possibly_damaging(0.655) TCGA-CG-5718-01 X 119243203 119243203 C T RHOXF1 Missense_Mutation p.A168T 0.20 tolerated(0.49) benign(0.141) TCGA-CG-5718-01 X 125685718 125685718 C T DCAF12L1 Missense_Mutation p.G292R 0.25 tolerated(0.88) benign(0.001) TCGA-CG-5718-01 X 153044076 153044076 T G PLXNB3 Missense_Mutation p.C1881G 0.29 tolerated(0.14) benign(0.02) TCGA-CG-5718-01 X 153661991 153661991 C A ATP6AP1 Silent p.I203I 0.23 TCGA-CG-5718-01 X 21581449 21581449 C G CNKSR2 Nonsense_Mutation p.S496* 0.13 TCGA-CG-5718-01 X 228203 228203 C T GTPBP6 Silent p.A107A 0.27 TCGA-CG-5718-01 X 73047029 73047029 A G XIST RNA 0.22 TCGA-CG-5719-01 10 104135332 104135332 C T GBF1 Missense_Mutation p.P1292S 0.27 tolerated(0.86) benign(0) TCGA-CG-5719-01 10 106927067 106927067 G A SORCS3 Missense_Mutation p.V621M 0.19 deleterious(0) possibly_damaging(0.82) TCGA-CG-5719-01 10 128193340 128193340 C T C10orf90 Silent p.T143T 0.10 TCGA-CG-5719-01 10 55755492 55755492 G A PCDH15 Nonsense_Mutation p.R929* 0.25 TCGA-CG-5719-01 10 72285718 72285718 C T PALD1 Missense_Mutation p.T4M 0.15 deleterious(0) possibly_damaging(0.897) TCGA-CG-5719-01 10 7618701 7618701 C T ITIH5 Missense_Mutation p.D565N 0.05 tolerated(0.39) possibly_damaging(0.537) TCGA-CG-5719-01 11 118986773 118986773 G A C2CD2L Missense_Mutation p.G644D 0.05 deleterious(0.01) probably_damaging(1) TCGA-CG-5719-01 11 1275540 1275540 G A MUC5B Missense_Mutation p.V5146I 0.14 unknown(0) TCGA-CG-5719-01 11 64673986 64673986 C T ATG2A Silent p.P1001P 0.10 TCGA-CG-5719-01 11 65810465 65810465 C T GAL3ST3 Missense_Mutation p.R270H 0.21 deleterious(0) probably_damaging(0.999) TCGA-CG-5719-01 11 67201943 67201943 C T RPS6KB2 Silent p.N381N 0.25 TCGA-CG-5719-01 11 67223662 67223662 C T CABP4 Missense_Mutation p.R124C 0.13 deleterious(0) probably_damaging(0.999) TCGA-CG-5719-01 11 68456365 68456365 T C GAL Missense_Mutation p.I91T 0.14 tolerated(0.05) benign(0.008) TCGA-CG-5719-01 12 104492124 104492124 G A HCFC2 Missense_Mutation p.E582K 0.05 tolerated(0.54) probably_damaging(0.931) TCGA-CG-5719-01 12 107386583 107386583 C T CRY1 Silent p.Q581Q 0.03 TCGA-CG-5719-01 12 498207 498207 T C KDM5A Silent p.P17P 0.22 TCGA-CG-5719-01 12 58087953 58087953 G C OS9 Silent p.A3A 0.06 TCGA-CG-5719-01 12 7551181 7551181 C G CD163L1 Splice_Site p.X470_splice 0.14 TCGA-CG-5719-01 12 95660360 95660360 C T VEZT Missense_Mutation p.A221V 0.24 deleterious(0) possibly_damaging(0.898) TCGA-CG-5719-01 13 23928673 23928673 G A SACS Missense_Mutation p.S693L 0.07 probably_damaging(0.989) TCGA-CG-5719-01 13 45147517 45147517 G A TSC22D1 Silent p.S898S 0.12 TCGA-CG-5719-01 14 106321163 106321163 T C IGHM Missense_Mutation p.S276G 0.05 tolerated(0.32) possibly_damaging(0.557) TCGA-CG-5719-01 14 23817454 23817454 C T SLC22A17 Missense_Mutation p.A252T 0.21 tolerated(0.07) probably_damaging(0.963) TCGA-CG-5719-01 14 24026387 24026387 C G THTPA Missense_Mutation p.Q141E 0.05 tolerated(1) benign(0) TCGA-CG-5719-01 14 24648871 24648871 A T REC8 Missense_Mutation p.M463L 0.04 tolerated(0.85) benign(0) TCGA-CG-5719-01 14 30105555 30105555 G A PRKD1 Silent p.N377N 0.03 TCGA-CG-5719-01 14 68220880 68220880 G A ZFYVE26 Missense_Mutation p.R2346W 0.03 deleterious(0) probably_damaging(0.995) TCGA-CG-5719-01 14 93273162 93273162 C G GOLGA5 Missense_Mutation p.P209R 0.20 deleterious(0.01) benign(0.018) TCGA-CG-5719-01 15 65687476 65687476 G C IGDCC4 Missense_Mutation p.A511G 0.10 deleterious(0) probably_damaging(0.973) TCGA-CG-5719-01 15 70980090 70980090 A G UACA Missense_Mutation p.V165A 0.22 tolerated(0.2) benign(0.063) TCGA-CG-5719-01 15 78917483 78917483 G A CHRNB4 Missense_Mutation p.R497C 0.40 tolerated_low_confidence(0.1) benign(0.034) TCGA-CG-5719-01 16 19883643 19883643 G A GPRC5B Silent p.I175I 0.09 TCGA-CG-5719-01 16 72158753 72158753 C G PMFBP1 Missense_Mutation p.K834N 0.08 deleterious(0.02) possibly_damaging(0.754) TCGA-CG-5719-01 17 10301947 10301947 G A MYH8 Missense_Mutation p.A1331V 0.25 deleterious(0.02) possibly_damaging(0.79) TCGA-CG-5719-01 17 34869200 34869200 C T MYO19 Intron 0.16 TCGA-CG-5719-01 17 54428147 54428147 C T ANKFN1 Missense_Mutation p.T73M 0.15 deleterious_low_confidence(0) possibly_damaging(0.719) TCGA-CG-5719-01 18 48591919 48591919 G A SMAD4 Missense_Mutation p.R361H 0.13 deleterious(0.03) probably_damaging(1) TCGA-CG-5719-01 18 8113650 8113650 C T PTPRM Missense_Mutation p.P675S 0.22 deleterious(0.03) benign(0.172) TCGA-CG-5719-01 19 18311172 18311172 G A RAB3A Silent p.I104I 0.05 TCGA-CG-5719-01 19 19369476 19369476 G A HAPLN4 Missense_Mutation p.R225W 0.32 deleterious(0.02) possibly_damaging(0.744) TCGA-CG-5719-01 19 19656451 19656451 C T CILP2 Missense_Mutation p.R1033W 0.32 deleterious(0) probably_damaging(0.998) TCGA-CG-5719-01 19 36558857 36558857 G C WDR62 Missense_Mutation p.G276A 0.18 deleterious(0) probably_damaging(0.994) TCGA-CG-5719-01 19 41600209 41600209 G A CYP2A13 Missense_Mutation p.D345N 0.24 deleterious(0.01) probably_damaging(0.993) TCGA-CG-5719-01 19 49838856 49838857 - CTG CD37 In_Frame_Ins p.L20_F21insC 0.14 TCGA-CG-5719-01 19 52149117 52149117 G A SIGLEC14 Silent p.D206D 0.05 TCGA-CG-5719-01 19 56369621 56369621 C T NLRP4 Missense_Mutation p.R288W 0.16 deleterious(0) benign(0.142) TCGA-CG-5719-01 19 59080632 59080632 C T MZF1 Intron 0.04 TCGA-CG-5719-01 19 7584405 7584405 G A ZNF358 Missense_Mutation p.D93N 0.24 tolerated(0.15) probably_damaging(0.99) TCGA-CG-5719-01 19 8959694 8959694 G A MUC16 Missense_Mutation p.R14480W 0.24 benign(0.388) TCGA-CG-5719-01 19 9089844 9089844 C T MUC16 Silent p.K657K 0.08 TCGA-CG-5719-01 1 160327004 160327004 C T NCSTN Silent p.I656I 0.28 TCGA-CG-5719-01 1 164761842 164761842 C T PBX1 Missense_Mutation p.S126L 0.15 tolerated(0.1) possibly_damaging(0.858) TCGA-CG-5719-01 1 173552664 173552664 G A SLC9C2 Silent p.I207I 0.13 TCGA-CG-5719-01 1 196274444 196274444 G A KCNT2 Silent p.L839L 0.26 TCGA-CG-5719-01 1 216741435 216741435 G T ESRRG Missense_Mutation p.R204S 0.11 deleterious(0) probably_damaging(0.956) TCGA-CG-5719-01 1 237796936 237796936 G A RYR2 Missense_Mutation p.R2205H 0.22 probably_damaging(1) TCGA-CG-5719-01 1 240256750 240256750 G A FMN2 Silent p.P447P 0.11 TCGA-CG-5719-01 1 57349320 57349320 C A C8A Nonsense_Mutation p.S274* 0.12 TCGA-CG-5719-01 20 2597930 2597930 C T TMC2 Missense_Mutation p.P718L 0.05 deleterious(0) possibly_damaging(0.703) TCGA-CG-5719-01 20 3804851 3804851 C T AP5S1 Silent p.L170L 0.20 TCGA-CG-5719-01 21 10951401 10951401 A T TPTE Missense_Mutation p.L104Q 0.06 deleterious(0) possibly_damaging(0.901) TCGA-CG-5719-01 21 47786730 47786730 C T PCNT Silent p.A947A 0.22 TCGA-CG-5719-01 3 134256003 134256003 C T CEP63 Missense_Mutation p.R150C 0.18 deleterious(0) probably_damaging(1) TCGA-CG-5719-01 3 151171512 151171512 A T IGSF10 Missense_Mutation p.F125L 0.16 tolerated(0.06) benign(0.234) TCGA-CG-5719-01 3 152554282 152554282 C T P2RY1 Silent p.Y237Y 0.14 TCGA-CG-5719-01 3 186953885 186953885 C T MASP1 Missense_Mutation p.G592S 0.29 deleterious(0) probably_damaging(1) TCGA-CG-5719-01 3 190025938 190025938 T C CLDN1 3'UTR 0.16 TCGA-CG-5719-01 3 52403955 52403955 G A DNAH1 Missense_Mutation p.E2020K 0.24 benign(0.002) TCGA-CG-5719-01 3 7494338 7494338 A T GRM7 Nonsense_Mutation p.K407* 0.24 TCGA-CG-5719-01 3 96706450 96706450 G A EPHA6 Missense_Mutation p.D243N 0.16 deleterious(0) probably_damaging(0.999) TCGA-CG-5719-01 4 162459360 162459360 C G FSTL5 Missense_Mutation p.D424H 0.06 deleterious(0) probably_damaging(0.999) TCGA-CG-5719-01 4 40438457 40438457 C T RBM47 Splice_Site p.X444_splice 0.14 TCGA-CG-5719-01 4 71458010 71458010 A C AMBN 5'UTR 0.16 TCGA-CG-5719-01 4 74447534 74447534 C T RASSF6 Missense_Mutation p.E273K 0.15 deleterious(0) probably_damaging(0.997) TCGA-CG-5719-01 4 77677626 77677626 A T SHROOM3 Silent p.T1578T 0.17 TCGA-CG-5719-01 4 94436497 94436497 C T GRID2 Missense_Mutation p.R710W 0.12 deleterious(0) probably_damaging(0.989) TCGA-CG-5719-01 5 65288672 65288672 T C ERBB2IP Silent p.F42F 0.22 TCGA-CG-5719-01 5 65342364 65342364 G C ERBB2IP Missense_Mutation p.E596Q 0.04 tolerated(0.14) possibly_damaging(0.557) TCGA-CG-5719-01 6 24596282 24596282 G A KIAA0319 Missense_Mutation p.A207V 0.11 tolerated(0.19) benign(0.003) TCGA-CG-5719-01 6 3287186 3287186 C T SLC22A23 Missense_Mutation p.V485M 0.21 tolerated(0.28) benign(0.202) TCGA-CG-5719-01 6 41196676 41196676 G A TREML4 Missense_Mutation p.M96I 0.11 tolerated(0.19) benign(0.088) TCGA-CG-5719-01 6 70459254 70459254 C A LMBRD1 Missense_Mutation p.C151F 0.20 tolerated(0.12) benign(0.02) TCGA-CG-5719-01 7 100701312 100701312 C T MUC17 Missense_Mutation p.T4490M 0.04 unknown(0) TCGA-CG-5719-01 7 127670603 127670603 G C LRRC4 Missense_Mutation p.L31V 0.18 tolerated_low_confidence(0.44) benign(0.002) TCGA-CG-5719-01 7 20421359 20421359 G C ITGB8 Missense_Mutation p.G271R 0.12 deleterious(0) probably_damaging(1) TCGA-CG-5719-01 7 86416011 86416011 C T GRM3 Silent p.D301D 0.18 TCGA-CG-5719-01 8 140630630 140630631 - T KCNK9 Nonsense_Mutation p.Y332* 0.17 TCGA-CG-5719-01 8 21976480 21976480 G A HR Missense_Mutation p.R1066C 0.05 tolerated(0.06) benign(0.219) TCGA-CG-5719-01 8 37963254 37963254 C A ASH2L Silent p.G62G 0.05 TCGA-CG-5719-01 9 127265456 127265456 C T NR5A1 Missense_Mutation p.C49Y 0.30 deleterious(0) probably_damaging(1) TCGA-CG-5719-01 X 136651179 136651179 C T ZIC3 Silent p.C393C 0.12 TCGA-CG-5719-01 X 52673686 52673686 G - SSX7 3'UTR 0.17 TCGA-CG-5719-01 X 99854068 99854068 C T TNMD Silent p.N211N 0.16 TCGA-CG-5720-01 10 105830281 105830281 C T COL17A1 Silent p.S170S 0.29 TCGA-CG-5720-01 10 25314433 25314438 AATCTC - THNSL1 3'UTR 0.29 TCGA-CG-5720-01 10 55582826 55582826 G T PCDH15 Missense_Mutation p.P1556T 0.26 deleterious_low_confidence(0) benign(0.271) TCGA-CG-5720-01 10 60566791 60566791 A C BICC1 Missense_Mutation p.E750A 0.26 deleterious(0.03) benign(0.038) TCGA-CG-5720-01 10 6265969 6265969 C T PFKFB3 Missense_Mutation p.T421M 0.35 probably_damaging(0.999) TCGA-CG-5720-01 11 117301568 117301568 G A DSCAML1 Silent p.A1912A 0.28 TCGA-CG-5720-01 12 103696020 103696020 C T C12orf42 Missense_Mutation p.G317S 0.33 tolerated(0.11) benign(0.053) TCGA-CG-5720-01 12 2024076 2024076 C T CACNA2D4 Missense_Mutation p.G85S 0.24 tolerated(0.14) benign(0.132) TCGA-CG-5720-01 12 53298464 53298466 TTG - KRT8 In_Frame_Del p.N128del 0.37 TCGA-CG-5720-01 12 6700638 6700638 A G CHD4 Missense_Mutation p.F1112L 0.34 deleterious(0) possibly_damaging(0.787) TCGA-CG-5720-01 12 7177629 7177629 C T C1S Missense_Mutation p.R581C 0.27 tolerated(0.18) possibly_damaging(0.806) TCGA-CG-5720-01 13 32912230 32912230 T C BRCA2 Silent p.N1246N 0.34 TCGA-CG-5720-01 13 41134410 41134410 C T FOXO1 Silent p.S406S 0.31 TCGA-CG-5720-01 13 42442594 42442594 G A VWA8 Missense_Mutation p.S367L 0.35 tolerated(0.15) benign(0.001) TCGA-CG-5720-01 13 52440337 52440337 A G CCDC70 3'UTR 0.25 TCGA-CG-5720-01 14 107013046 107013046 C T IGHV3-49 Silent p.A83A 0.36 TCGA-CG-5720-01 14 23881974 23881974 T G MYH7 3'UTR 0.34 TCGA-CG-5720-01 14 24841805 24841805 T C NFATC4 Missense_Mutation p.V515A 0.21 deleterious(0.01) probably_damaging(0.994) TCGA-CG-5720-01 14 55818091 55818091 C T FBXO34 Missense_Mutation p.T328I 0.37 tolerated(0.08) benign(0.189) TCGA-CG-5720-01 14 70924424 70924424 C G ADAM21 Missense_Mutation p.Q70E 0.19 deleterious(0.02) benign(0.112) TCGA-CG-5720-01 15 29398846 29398846 G A APBA2 Missense_Mutation p.V581M 0.33 deleterious(0.03) possibly_damaging(0.856) TCGA-CG-5720-01 15 33855070 33855070 G T RYR3 Missense_Mutation p.K335N 0.12 benign(0.129) TCGA-CG-5720-01 15 56032705 56032705 C T PRTG Missense_Mutation p.G91D 0.04 deleterious(0) probably_damaging(1) TCGA-CG-5720-01 15 65693267 65693267 T A IGDCC4 Missense_Mutation p.R240W 0.24 deleterious(0.02) possibly_damaging(0.447) TCGA-CG-5720-01 15 69238039 69238039 A G SPESP1 Missense_Mutation p.K56E 0.19 tolerated(0.19) benign(0.111) TCGA-CG-5720-01 15 82523297 82523297 G A EFTUD1 Silent p.A249A 0.27 TCGA-CG-5720-01 15 91432780 91432780 C A FES Missense_Mutation p.F280L 0.24 deleterious(0.05) possibly_damaging(0.606) TCGA-CG-5720-01 16 48286217 48286217 T A LONP2 Missense_Mutation p.C137S 0.05 tolerated(0.74) benign(0.001) TCGA-CG-5720-01 16 51173663 51173663 A C SALL1 Missense_Mutation p.F824V 0.28 tolerated(0.15) possibly_damaging(0.564) TCGA-CG-5720-01 16 67688711 67688711 C T RLTPR Silent p.L1205L 0.30 TCGA-CG-5720-01 16 72822363 72822363 G A ZFHX3 Missense_Mutation p.T3271M 0.05 unknown(0) TCGA-CG-5720-01 17 12043181 12043181 C T MAP2K4 Missense_Mutation p.P356S 0.26 deleterious(0.01) probably_damaging(1) TCGA-CG-5720-01 17 56435766 56435766 G T RNF43 Nonsense_Mutation p.Y457* 0.35 TCGA-CG-5720-01 17 56569162 56569162 C T MTMR4 Silent p.L1150L 0.30 TCGA-CG-5720-01 17 65899995 65899995 A G BPTF Silent p.Q878Q 0.34 TCGA-CG-5720-01 18 2544689 2544689 G A METTL4 Silent p.L382L 0.36 TCGA-CG-5720-01 18 31263444 31263444 G A ASXL3 Missense_Mutation p.R264K 0.28 probably_damaging(0.997) TCGA-CG-5720-01 19 12767489 12767489 C T MAN2B1 Missense_Mutation p.V514I 0.29 tolerated(0.6) benign(0.044) TCGA-CG-5720-01 19 12969456 12969456 C T MAST1 Silent p.R423R 0.26 TCGA-CG-5720-01 19 36215974 36215974 C T KMT2B Missense_Mutation p.R1172C 0.29 probably_damaging(0.973) TCGA-CG-5720-01 19 36216527 36216527 G A KMT2B Splice_Site p.X1263_splice 0.39 TCGA-CG-5720-01 19 39965244 39965244 A G SUPT5H Silent p.S970S 0.05 TCGA-CG-5720-01 19 42128059 42128059 G A CEACAM4 Silent p.A169A 0.24 TCGA-CG-5720-01 19 4249236 4249236 G A CCDC94 Silent p.P12P 0.38 TCGA-CG-5720-01 19 43585204 43585204 G C PSG2 Missense_Mutation p.Q87E 0.13 tolerated(0.27) benign(0.009) TCGA-CG-5720-01 19 50519372 50519372 G C VRK3 Missense_Mutation p.F16L 0.05 deleterious(0) probably_damaging(0.999) TCGA-CG-5720-01 19 51503769 51503769 C T KLK8 Silent p.Q92Q 0.34 TCGA-CG-5720-01 19 58928997 58928997 G A ZNF584 Missense_Mutation p.R371Q 0.09 tolerated(0.55) possibly_damaging(0.621) TCGA-CG-5720-01 1 110279764 110279764 G T GSTM3 Missense_Mutation p.Q203K 0.28 tolerated(1) benign(0) TCGA-CG-5720-01 1 149885391 149885391 A G SV2A Translation_Start_Site p.M1? 0.39 deleterious_low_confidence(0) possibly_damaging(0.692) TCGA-CG-5720-01 1 152648706 152648706 C G LCE2C Missense_Mutation p.S72C 0.28 tolerated_low_confidence(1) unknown(0) TCGA-CG-5720-01 1 158262407 158262407 C T CD1C Missense_Mutation p.S211F 0.23 deleterious(0) probably_damaging(1) TCGA-CG-5720-01 1 16260606 16260606 G A SPEN Missense_Mutation p.R2624Q 0.31 probably_damaging(0.99) TCGA-CG-5720-01 1 197403842 197403842 C A CRB1 Missense_Mutation p.A950E 0.30 deleterious(0.03) possibly_damaging(0.888) TCGA-CG-5720-01 1 22073598 22073598 G C USP48 Nonsense_Mutation p.S318* 0.23 TCGA-CG-5720-01 1 222802939 222802939 G A MIA3 Missense_Mutation p.E793K 0.04 tolerated(0.15) benign(0.092) TCGA-CG-5720-01 1 236906280 236906280 C T ACTN2 Missense_Mutation p.R398C 0.33 deleterious(0) probably_damaging(0.999) TCGA-CG-5720-01 1 247835708 247835708 G T OR13G1 Nonsense_Mutation p.C212* 0.04 TCGA-CG-5720-01 1 247921586 247921586 C A OR1C1 Silent p.G41G 0.26 TCGA-CG-5720-01 1 57415241 57415241 C T C8B Missense_Mutation p.R284Q 0.32 tolerated(0.16) benign(0.105) TCGA-CG-5720-01 20 31022999 31022999 C T ASXL1 Silent p.G828G 0.28 TCGA-CG-5720-01 20 35672579 35672579 T C RBL1 Silent p.E560E 0.05 TCGA-CG-5720-01 21 43539418 43539418 C T UMODL1 Silent p.G1019G 0.04 TCGA-CG-5720-01 2 148680566 148680566 C T ACVR2A Missense_Mutation p.P368S 0.06 deleterious(0) probably_damaging(1) TCGA-CG-5720-01 2 179642243 179642243 T C TTN Missense_Mutation p.I1517V 0.09 TCGA-CG-5720-01 2 1805549 1805549 G C MYT1L Missense_Mutation p.I1063M 0.04 deleterious(0.05) possibly_damaging(0.535) TCGA-CG-5720-01 2 203407071 203407072 AG - BMPR2 Frame_Shift_Del p.E439Gfs*8 0.09 TCGA-CG-5720-01 2 232326384 232326384 G A NCL Silent p.D160D 0.23 TCGA-CG-5720-01 2 241516317 241516317 C G RNPEPL1 Missense_Mutation p.N367K 0.27 deleterious(0) probably_damaging(0.999) TCGA-CG-5720-01 2 27279566 27279566 G C AGBL5 Missense_Mutation p.E481Q 0.04 deleterious(0.02) probably_damaging(0.938) TCGA-CG-5720-01 2 29295778 29295778 C A C2orf71 Silent p.L450L 0.06 TCGA-CG-5720-01 2 69053233 69053233 C T ARHGAP25 Silent p.R616R 0.27 TCGA-CG-5720-01 3 122598265 122598265 C G DIRC2 3'UTR 0.03 TCGA-CG-5720-01 3 123667796 123667796 T C CCDC14 Missense_Mutation p.K186R 0.35 tolerated(0.13) possibly_damaging(0.486) TCGA-CG-5720-01 3 38628904 38628904 C T SCN5A Missense_Mutation p.R808H 0.38 deleterious(0.02) possibly_damaging(0.859) TCGA-CG-5720-01 3 49051460 49051460 T A WDR6 Missense_Mutation p.H861Q 0.32 tolerated(1) benign(0.002) TCGA-CG-5720-01 3 49412898 49412898 T G RHOA Missense_Mutation p.Y42S 0.28 deleterious(0.01) possibly_damaging(0.527) TCGA-CG-5720-01 3 50367977 50367977 C A RASSF1 3'UTR 0.34 TCGA-CG-5720-01 3 78683085 78683085 C A ROBO1 Missense_Mutation p.G1161W 0.24 deleterious(0) probably_damaging(0.959) TCGA-CG-5720-01 4 100522851 100522851 A C MTTP Missense_Mutation p.N442H 0.28 tolerated(0.11) benign(0.102) TCGA-CG-5720-01 4 114277913 114277913 C T ANK2 Silent p.V2713V 0.30 TCGA-CG-5720-01 4 126373396 126373396 C A FAT4 Missense_Mutation p.T3742K 0.31 benign(0.159) TCGA-CG-5720-01 4 183675803 183675803 G A TENM3 Missense_Mutation p.R1428Q 0.29 deleterious(0.04) benign(0.022) TCGA-CG-5720-01 5 127673797 127673797 G A FBN2 Missense_Mutation p.R1164C 0.31 deleterious(0) probably_damaging(0.989) TCGA-CG-5720-01 5 138268343 138268343 T A CTNNA1 Missense_Mutation p.I792N 0.64 deleterious(0) possibly_damaging(0.837) TCGA-CG-5720-01 5 13919406 13919406 G A DNAH5 Missense_Mutation p.A285V 0.29 possibly_damaging(0.74) TCGA-CG-5720-01 5 140517125 140517125 G A PCDHB5 Silent p.S703S 0.32 TCGA-CG-5720-01 5 78417142 78417142 G T BHMT Missense_Mutation p.L193F 0.33 tolerated(0.19) benign(0.024) TCGA-CG-5720-01 5 89989834 89989834 C A GPR98 Missense_Mutation p.P2421T 0.43 benign(0.022) TCGA-CG-5720-01 6 131225628 131225628 A C EPB41L2 Silent p.S302S 0.29 TCGA-CG-5720-01 6 165711567 165711567 C T C6orf118 Silent p.A320A 0.22 TCGA-CG-5720-01 6 20781484 20781484 C T CDKAL1 Missense_Mutation p.S209F 0.26 deleterious(0) possibly_damaging(0.516) TCGA-CG-5720-01 6 28254891 28254891 A C PGBD1 Missense_Mutation p.E196D 0.27 deleterious_low_confidence(0.01) benign(0.002) TCGA-CG-5720-01 6 49696295 49696295 G T CRISP3 3'UTR 0.21 TCGA-CG-5720-01 6 53140993 53140993 C T ELOVL5 Missense_Mutation p.G130E 0.28 tolerated(0.1) benign(0.233) TCGA-CG-5720-01 6 73100419 73100419 A G RIMS1 Missense_Mutation p.S1496G 0.27 deleterious(0) probably_damaging(0.983) TCGA-CG-5720-01 6 74079495 74079495 G A OOEP Silent p.A7A 0.25 TCGA-CG-5720-01 7 123092689 123092689 A C IQUB 3'UTR 0.39 TCGA-CG-5720-01 8 16021714 16021714 A G MSR1 Missense_Mutation p.I226T 0.28 tolerated(0.21) possibly_damaging(0.844) TCGA-CG-5720-01 8 24771361 24771361 G A NEFM Missense_Mutation p.E19K 0.42 tolerated(0.08) unknown(0) TCGA-CG-5720-01 9 130579551 130579551 C T ENG Intron 0.29 TCGA-CG-5720-01 9 82267638 82267638 G C TLE4 Missense_Mutation p.S174T 0.31 tolerated(0.22) benign(0.211) TCGA-CG-5720-01 X 119760593 119760593 T C C1GALT1C1 Silent p.A143A 0.68 TCGA-CG-5720-01 X 122829933 122829933 C A THOC2 Missense_Mutation p.G180V 0.05 tolerated(0.15) benign(0.003) TCGA-CG-5720-01 X 16876898 16876898 G A RBBP7 Missense_Mutation p.R172C 0.57 deleterious(0.01) probably_damaging(0.997) TCGA-CG-5720-01 Y 4925026 4925026 C T PCDH11Y Silent p.G54G 0.64 TCGA-CG-5721-01 10 100167720 100167720 G A PYROXD2 Missense_Mutation p.A61V 0.14 tolerated(0.18) benign(0.019) TCGA-CG-5721-01 10 100189313 100189313 T C HPS1 Intron 0.06 TCGA-CG-5721-01 10 101373648 101373648 C T SLC25A28 Missense_Mutation p.A109T 0.14 tolerated(0.13) benign(0.326) TCGA-CG-5721-01 10 101567244 101567244 T C ABCC2 Missense_Mutation p.V545A 0.04 tolerated(0.14) benign(0.03) TCGA-CG-5721-01 10 101591749 101591749 T C ABCC2 Missense_Mutation p.I1040T 0.16 tolerated(0.23) benign(0.008) TCGA-CG-5721-01 10 101656041 101656041 T C DNMBP Missense_Mutation p.T1012A 0.17 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 10 101969415 101969417 AAG - CHUK In_Frame_Del p.L355del 0.22 TCGA-CG-5721-01 10 102249885 102249885 G A SEC31B Missense_Mutation p.R949C 0.20 tolerated(0.07) benign(0.276) TCGA-CG-5721-01 10 102690834 102690834 G A FAM178A Missense_Mutation p.R812Q 0.24 tolerated(1) benign(0.015) TCGA-CG-5721-01 10 102891274 102891274 G C TLX1 5'UTR 0.38 TCGA-CG-5721-01 10 103371117 103371117 A G FBXW4 Silent p.R390R 0.18 TCGA-CG-5721-01 10 103553747 103553747 T C MGEA5 Missense_Mutation p.S665G 0.17 tolerated(0.25) benign(0.374) TCGA-CG-5721-01 10 103560141 103560141 A G MGEA5 Silent p.S351S 0.13 TCGA-CG-5721-01 10 103990855 103990855 A G PITX3 Missense_Mutation p.W109R 0.45 deleterious(0.03) probably_damaging(0.961) TCGA-CG-5721-01 10 104127249 104127249 T A GBF1 Missense_Mutation p.N857K 0.15 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 10 104129053 104129053 A G GBF1 Missense_Mutation p.H1019R 0.25 deleterious(0) probably_damaging(0.969) TCGA-CG-5721-01 10 104129985 104129985 C T GBF1 Silent p.L1131L 0.20 TCGA-CG-5721-01 10 104183602 104183602 G A CUEDC2 Silent p.R203R 0.15 TCGA-CG-5721-01 10 104268964 104268964 A G SUFU Missense_Mutation p.Y74C 0.14 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 10 104389822 104389822 G A SUFU Splice_Site p.X456_splice 0.19 TCGA-CG-5721-01 10 104557834 104557834 T C WBP1L Missense_Mutation p.Y59H 0.22 deleterious(0.01) benign(0.238) TCGA-CG-5721-01 10 104622788 104622788 A G C10orf32 3'UTR 0.23 TCGA-CG-5721-01 10 104638614 104638614 C T AS3MT Missense_Mutation p.R251C 0.21 tolerated(0.11) benign(0.022) TCGA-CG-5721-01 10 105151956 105151956 T C USMG5 Missense_Mutation p.T58A 0.21 deleterious_low_confidence(0.01) benign(0.245) TCGA-CG-5721-01 10 105217967 105217967 C T CALHM1 Missense_Mutation p.R181H 0.16 deleterious(0.02) benign(0.026) TCGA-CG-5721-01 10 105920859 105920859 T C WDR96 Missense_Mutation p.K1159R 0.05 tolerated(0.07) benign(0.278) TCGA-CG-5721-01 10 105963294 105963294 T - WDR96 Intron 0.24 TCGA-CG-5721-01 10 1065556 1065556 G - IDI2 Frame_Shift_Del p.W196Gfs*2 0.21 TCGA-CG-5721-01 10 108434854 108434854 A - SORCS1 Frame_Shift_Del p.F631Lfs*16 0.23 TCGA-CG-5721-01 10 112769489 112769489 A G SHOC2 Missense_Mutation p.N481D 0.19 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 10 113935430 113935430 A G GPAM Missense_Mutation p.F114S 0.27 deleterious(0.01) probably_damaging(0.998) TCGA-CG-5721-01 10 113937763 113937763 T C GPAM Missense_Mutation p.Y93C 0.17 tolerated(0.17) probably_damaging(0.987) TCGA-CG-5721-01 10 115348178 115348178 C T HABP2 3'UTR 0.35 TCGA-CG-5721-01 10 115451793 115451793 T C CASP7 Silent p.G21G 0.15 TCGA-CG-5721-01 10 115980582 115980582 T C TDRD1 Missense_Mutation p.V917A 0.21 tolerated(0.28) benign(0.06) TCGA-CG-5721-01 10 116602927 116602927 T C FAM160B1 Missense_Mutation p.V253A 0.22 tolerated(0.91) benign(0.003) TCGA-CG-5721-01 10 116603563 116603563 G A FAM160B1 Missense_Mutation p.A294T 0.20 tolerated(0.21) benign(0.089) TCGA-CG-5721-01 10 116731926 116731926 T C TRUB1 Missense_Mutation p.L210P 0.17 deleterious(0) probably_damaging(0.988) TCGA-CG-5721-01 10 116930924 116930924 C T ATRNL1 Nonsense_Mutation p.Q408* 0.18 TCGA-CG-5721-01 10 117884972 117884972 G T GFRA1 Missense_Mutation p.P177Q 0.19 tolerated(0.05) probably_damaging(0.938) TCGA-CG-5721-01 10 118439100 118439100 C T HSPA12A Silent p.P400P 0.21 TCGA-CG-5721-01 10 119043331 119043331 T C PDZD8 Silent p.T971T 0.19 TCGA-CG-5721-01 10 119043801 119043801 G A PDZD8 Missense_Mutation p.P815S 0.18 tolerated(0.56) benign(0) TCGA-CG-5721-01 10 119798815 119798815 T C RAB11FIP2 Silent p.L311L 0.23 TCGA-CG-5721-01 10 120921921 120921921 A G SFXN4 Silent p.S61S 0.20 TCGA-CG-5721-01 10 121436385 121436385 A G BAG3 Missense_Mutation p.D440G 0.12 deleterious(0.01) unknown(0) TCGA-CG-5721-01 10 121658045 121658045 T C SEC23IP Silent p.S90S 0.20 TCGA-CG-5721-01 10 12221106 12221106 T C NUDT5 Missense_Mutation p.T53A 0.16 deleterious(0.01) benign(0.051) TCGA-CG-5721-01 10 122348907 122348907 C A PPAPDC1A Missense_Mutation p.P237T 0.11 deleterious(0) possibly_damaging(0.805) TCGA-CG-5721-01 10 123989903 123989903 T C TACC2 Missense_Mutation p.L2692P 0.18 probably_damaging(0.999) TCGA-CG-5721-01 10 124013541 124013541 C T TACC2 Silent p.D2939D 0.23 TCGA-CG-5721-01 10 124066813 124066813 T - BTBD16 Frame_Shift_Del p.F302Lfs*15 0.19 TCGA-CG-5721-01 10 124742484 124742484 A T PSTK Missense_Mutation p.D151V 0.19 deleterious(0) probably_damaging(0.969) TCGA-CG-5721-01 10 125426422 125426422 C A GPR26 Missense_Mutation p.L167M 0.25 tolerated(0.25) benign(0.1) TCGA-CG-5721-01 10 125426428 125426428 T C GPR26 Missense_Mutation p.F169L 0.18 deleterious(0.04) benign(0.14) TCGA-CG-5721-01 10 125447563 125447563 T C GPR26 Missense_Mutation p.Y301H 0.23 deleterious(0) probably_damaging(0.971) TCGA-CG-5721-01 10 125447602 125447602 C T GPR26 Missense_Mutation p.H314Y 0.15 deleterious(0.02) benign(0.094) TCGA-CG-5721-01 10 125526528 125526528 A G CPXM2 Silent p.Y480Y 0.27 TCGA-CG-5721-01 10 125528175 125528175 A G CPXM2 Missense_Mutation p.L389P 0.14 deleterious(0) possibly_damaging(0.903) TCGA-CG-5721-01 10 125601960 125601960 C T CPXM2 Silent p.A186A 0.19 TCGA-CG-5721-01 10 126660638 126660638 T - ZRANB1 Frame_Shift_Del p.F370Lfs*6 0.19 TCGA-CG-5721-01 10 127413917 127413917 T C EDRF1 Missense_Mutation p.Y181H 0.25 deleterious(0) probably_damaging(0.988) TCGA-CG-5721-01 10 127730732 127730732 T C ADAM12 Intron 0.13 TCGA-CG-5721-01 10 128192694 128192694 C T C10orf90 Missense_Mutation p.A359T 0.17 tolerated(1) benign(0.001) TCGA-CG-5721-01 10 128821470 128821470 T C DOCK1 Missense_Mutation p.V424A 0.21 deleterious(0) benign(0.418) TCGA-CG-5721-01 10 129871635 129871635 A G PTPRE Missense_Mutation p.Q500R 0.09 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 10 129906399 129906399 A G MKI67 Silent p.G1235G 0.15 TCGA-CG-5721-01 10 129913250 129913250 C - MKI67 Frame_Shift_Del p.M474Ifs*28 0.17 TCGA-CG-5721-01 10 131666125 131666125 C - EBF3 Frame_Shift_Del p.G269Vfs*6 0.20 TCGA-CG-5721-01 10 134218153 134218153 C T PWWP2B Missense_Mutation p.P50L 0.23 tolerated(0.18) benign(0.005) TCGA-CG-5721-01 10 134218255 134218255 C - PWWP2B Frame_Shift_Del p.P86Lfs*100 0.34 TCGA-CG-5721-01 10 134646945 134646945 A G TTC40 Missense_Mutation p.V2345A 0.18 tolerated(0.06) benign(0.442) TCGA-CG-5721-01 10 134886463 134886463 C T GPR123 Missense_Mutation p.A166V 0.23 deleterious_low_confidence(0) possibly_damaging(0.682) TCGA-CG-5721-01 10 135099060 135099060 C T TUBGCP2 Missense_Mutation p.A627T 0.24 tolerated(0.25) benign(0.287) TCGA-CG-5721-01 10 135346227 135346227 A G CYP2E1 Missense_Mutation p.Y227C 0.04 deleterious(0.05) possibly_damaging(0.491) TCGA-CG-5721-01 10 15154898 15154898 T C NMT2 Missense_Mutation p.H412R 0.22 deleterious(0) probably_damaging(0.998) TCGA-CG-5721-01 10 15255063 15255063 C T FAM171A1 Missense_Mutation p.A842T 0.14 tolerated(0.47) benign(0.004) TCGA-CG-5721-01 10 16994323 16994323 A G CUBN Missense_Mutation p.Y1641H 0.19 deleterious(0.02) probably_damaging(0.951) TCGA-CG-5721-01 10 17756845 17756845 A G STAM 3'UTR 0.22 TCGA-CG-5721-01 10 18823131 18823131 T C CACNB2 Missense_Mutation p.V394A 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-CG-5721-01 10 21414839 21414839 T C C10orf113 Missense_Mutation p.I127M 0.21 deleterious(0.01) possibly_damaging(0.506) TCGA-CG-5721-01 10 23003192 23003192 G A PIP4K2A Missense_Mutation p.H22Y 0.09 deleterious(0) possibly_damaging(0.806) TCGA-CG-5721-01 10 25314110 25314110 T C THNSL1 Missense_Mutation p.V653A 0.18 tolerated(0.06) benign(0.048) TCGA-CG-5721-01 10 25861658 25861658 T C GPR158 Missense_Mutation p.V532A 0.26 deleterious(0.04) benign(0.432) TCGA-CG-5721-01 10 25887184 25887184 T C GPR158 Missense_Mutation p.C877R 0.07 deleterious(0) probably_damaging(0.976) TCGA-CG-5721-01 10 25887641 25887641 T C GPR158 Missense_Mutation p.V1029A 0.19 deleterious(0.01) possibly_damaging(0.574) TCGA-CG-5721-01 10 27306695 27306695 C G ANKRD26 Missense_Mutation p.E1414D 0.14 tolerated(0.06) probably_damaging(0.959) TCGA-CG-5721-01 10 27311484 27311484 T C ANKRD26 Intron 0.08 TCGA-CG-5721-01 10 27382687 27382687 A G ANKRD26 Missense_Mutation p.V95A 0.18 deleterious(0.01) possibly_damaging(0.857) TCGA-CG-5721-01 10 27454351 27454351 G A MASTL Missense_Mutation p.A232T 0.23 tolerated(0.28) benign(0.008) TCGA-CG-5721-01 10 27538044 27538044 C T RP11-85G18.6 Intron 0.15 TCGA-CG-5721-01 10 27687296 27687296 A T PTCHD3 Missense_Mutation p.I744N 0.06 deleterious(0) probably_damaging(0.998) TCGA-CG-5721-01 10 28358700 28358700 C T MPP7 Splice_Site p.X402_splice 0.17 TCGA-CG-5721-01 10 28527589 28527589 A G MPP7 5'UTR 0.31 TCGA-CG-5721-01 10 28897190 28897190 C T WAC Missense_Mutation p.P332L 0.23 tolerated_low_confidence(0.05) benign(0.004) TCGA-CG-5721-01 10 29760116 29760116 C - SVIL Frame_Shift_Del p.M1863Wfs*44 0.27 TCGA-CG-5721-01 10 30316194 30316194 A G KIAA1462 Silent p.V961V 0.17 TCGA-CG-5721-01 10 30317740 30317740 A T KIAA1462 Missense_Mutation p.I446K 0.16 tolerated(0.05) benign(0.001) TCGA-CG-5721-01 10 31134202 31134202 T C ZNF438 Silent p.R725R 0.17 TCGA-CG-5721-01 10 3199640 3199640 A G PITRM1 Missense_Mutation p.L445P 0.17 deleterious(0) probably_damaging(0.95) TCGA-CG-5721-01 10 32101709 32101710 - T ARHGAP12 Frame_Shift_Ins p.T626Nfs*20 0.19 TCGA-CG-5721-01 10 32575755 32575755 T C EPC1 Missense_Mutation p.T420A 0.17 tolerated(0.87) benign(0.001) TCGA-CG-5721-01 10 32983820 32983820 A G C10ORF68 Silent p.E93E 0.24 TCGA-CG-5721-01 10 33481334 33481334 T C NRP1 Missense_Mutation p.Y646C 0.17 tolerated(0.15) possibly_damaging(0.497) TCGA-CG-5721-01 10 34620065 34620065 T C PARD3 Missense_Mutation p.D941G 0.18 deleterious(0.01) possibly_damaging(0.899) TCGA-CG-5721-01 10 34739363 34739363 T C PARD3 Missense_Mutation p.Y199C 0.27 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-CG-5721-01 10 3821740 3821740 C T KLF6 Silent p.R281R 0.15 TCGA-CG-5721-01 10 38345181 38345181 T C ZNF33A Missense_Mutation p.V710A 0.21 tolerated(0.7) benign(0.024) TCGA-CG-5721-01 10 38345257 38345257 A G ZNF33A Silent p.E735E 0.20 TCGA-CG-5721-01 10 395363 395363 T A DIP2C Missense_Mutation p.Q1006L 0.18 deleterious(0) possibly_damaging(0.6) TCGA-CG-5721-01 10 43015108 43015108 A G ZNF37BP RNA 0.29 TCGA-CG-5721-01 10 43691644 43691644 A G RASGEF1A 3'UTR 0.16 TCGA-CG-5721-01 10 43882564 43882564 T C HNRNPF Missense_Mutation p.T257A 0.15 tolerated(0.24) benign(0.044) TCGA-CG-5721-01 10 45499107 45499107 T C ZNF22 Silent p.N97N 0.14 TCGA-CG-5721-01 10 46159025 46159025 A G ZFAND4 Missense_Mutation p.V50A 0.22 deleterious(0) possibly_damaging(0.617) TCGA-CG-5721-01 10 48389232 48389232 G A RBP3 Missense_Mutation p.A549V 0.16 deleterious(0) possibly_damaging(0.717) TCGA-CG-5721-01 10 49395242 49395242 C A FRMPD2 Missense_Mutation p.M753I 0.15 tolerated(0.36) benign(0.005) TCGA-CG-5721-01 10 49400886 49400886 C T FRMPD2 Missense_Mutation p.R669Q 0.16 tolerated(1) benign(0) TCGA-CG-5721-01 10 49447676 49447676 G A FRMPD2 Missense_Mutation p.H254Y 0.14 tolerated(0.13) possibly_damaging(0.728) TCGA-CG-5721-01 10 50532305 50532305 C T C10orf71 Missense_Mutation p.P572L 0.16 tolerated(0.44) benign(0.012) TCGA-CG-5721-01 10 50946030 50946030 A G OGDHL Missense_Mutation p.V827A 0.19 tolerated(0.24) benign(0.015) TCGA-CG-5721-01 10 50957801 50957801 A G OGDHL Missense_Mutation p.F320L 0.38 deleterious(0) possibly_damaging(0.873) TCGA-CG-5721-01 10 51769276 51769276 C T AGAP6 Missense_Mutation p.A464V 0.12 deleterious(0.04) possibly_damaging(0.771) TCGA-CG-5721-01 10 51821319 51821319 G A RP11-324H6.5 RNA 0.15 TCGA-CG-5721-01 10 52389923 52389923 C T RP11-50E11.3 RNA 0.10 TCGA-CG-5721-01 10 5498073 5498073 A G NET1 Silent p.Q407Q 0.09 TCGA-CG-5721-01 10 5541219 5541219 G A CALML5 Silent p.D61D 0.20 TCGA-CG-5721-01 10 5567441 5567441 G A CALML3 Silent p.T131T 0.17 TCGA-CG-5721-01 10 60128572 60128572 T - UBE2D1 3'UTR 0.14 TCGA-CG-5721-01 10 60546761 60546761 A - BICC1 Frame_Shift_Del p.V158* 0.22 TCGA-CG-5721-01 10 60562876 60562876 T C BICC1 Silent p.A685A 0.18 TCGA-CG-5721-01 10 60994089 60994089 A G PHYHIPL Missense_Mutation p.I44M 0.22 tolerated_low_confidence(0.18) benign(0.002) TCGA-CG-5721-01 10 61112119 61112119 C T FAM13C Missense_Mutation p.V79I 0.12 deleterious_low_confidence(0.01) benign(0.008) TCGA-CG-5721-01 10 61413938 61413938 A G SLC16A9 Silent p.L282L 0.21 TCGA-CG-5721-01 10 61832609 61832609 A G ANK3 Missense_Mutation p.V2677A 0.15 benign(0) TCGA-CG-5721-01 10 63852092 63852092 T C ARID5B Missense_Mutation p.V957A 0.19 deleterious(0) probably_damaging(0.93) TCGA-CG-5721-01 10 63999501 63999501 A - RTKN2 Frame_Shift_Del p.C132Vfs*15 0.30 TCGA-CG-5721-01 10 64575968 64575968 T C EGR2 5'UTR 0.25 TCGA-CG-5721-01 10 64944406 64944406 A G JMJD1C Missense_Mutation p.V2308A 0.17 deleterious(0) probably_damaging(0.997) TCGA-CG-5721-01 10 64967249 64967249 T C JMJD1C Missense_Mutation p.T1394A 0.24 tolerated(0.05) benign(0.008) TCGA-CG-5721-01 10 67748557 67748557 T C CTNNA3 Splice_Site p.X720_splice 0.22 TCGA-CG-5721-01 10 69785304 69785304 G A HERC4 Missense_Mutation p.R303W 0.18 deleterious(0) probably_damaging(0.998) TCGA-CG-5721-01 10 70191674 70191674 T C DNA2 Missense_Mutation p.Y729C 0.22 deleterious(0) probably_damaging(0.993) TCGA-CG-5721-01 10 70405606 70405606 A G TET1 Silent p.P1040P 0.17 TCGA-CG-5721-01 10 70531074 70531074 A - CCAR1 Frame_Shift_Del p.S806Afs*85 0.18 TCGA-CG-5721-01 10 70672961 70672961 C T DDX50 Missense_Mutation p.A228V 0.14 tolerated(0.09) possibly_damaging(0.815) TCGA-CG-5721-01 10 70951476 70951476 T C SUPV3L1 Silent p.A269A 0.22 TCGA-CG-5721-01 10 71003028 71003028 G - HKDC1 Frame_Shift_Del p.A263Pfs*34 0.17 TCGA-CG-5721-01 10 71003054 71003054 C A HKDC1 Missense_Mutation p.L270M 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-CG-5721-01 10 71128328 71128328 A G HK1 Missense_Mutation p.S182G 0.10 deleterious(0) benign(0.051) TCGA-CG-5721-01 10 73498265 73498265 C T CDH23 Missense_Mutation p.T1412I 0.16 deleterious(0) probably_damaging(0.975) TCGA-CG-5721-01 10 73553070 73553070 A T CDH23 5'Flank 0.18 TCGA-CG-5721-01 10 73577125 73577125 G A PSAP 3'UTR 0.21 TCGA-CG-5721-01 10 74095633 74095633 C A DNAJB12 Missense_Mutation p.A389S 0.15 deleterious(0) probably_damaging(0.964) TCGA-CG-5721-01 10 74813265 74813265 T C P4HA1 Missense_Mutation p.T183A 0.18 tolerated(0.06) probably_damaging(0.997) TCGA-CG-5721-01 10 75051441 75051441 A G TTC18 Silent p.A729A 0.21 TCGA-CG-5721-01 10 75302625 75302625 C T USP54 Missense_Mutation p.G170S 0.16 deleterious(0.03) probably_damaging(1) TCGA-CG-5721-01 10 75331193 75331193 A G USP54 Missense_Mutation p.F76L 0.20 deleterious(0.02) probably_damaging(0.994) TCGA-CG-5721-01 10 75563406 75563406 C - NDST2 Frame_Shift_Del p.A690Lfs*36 0.26 TCGA-CG-5721-01 10 75563469 75563469 T C NDST2 Missense_Mutation p.T669A 0.19 tolerated(0.14) benign(0.06) TCGA-CG-5721-01 10 7683905 7683905 A G ITIH5 Missense_Mutation p.I95T 0.15 deleterious(0) possibly_damaging(0.856) TCGA-CG-5721-01 10 7801764 7801764 T A KIN Intron 0.14 TCGA-CG-5721-01 10 7866512 7866512 C T TAF3 Missense_Mutation p.S133F 0.15 deleterious(0) probably_damaging(0.986) TCGA-CG-5721-01 10 79589141 79589141 C T DLG5 Silent p.P719P 0.23 TCGA-CG-5721-01 10 79590513 79590513 A G DLG5 Missense_Mutation p.F623L 0.08 tolerated(0.41) benign(0.003) TCGA-CG-5721-01 10 79769355 79769355 G T POLR3A Missense_Mutation p.L617M 0.19 deleterious(0.03) possibly_damaging(0.786) TCGA-CG-5721-01 10 8006770 8006770 A G TAF3 Missense_Mutation p.T433A 0.21 deleterious(0.04) benign(0.084) TCGA-CG-5721-01 10 8007187 8007187 A G TAF3 Missense_Mutation p.T572A 0.08 tolerated_low_confidence(0.81) benign(0.001) TCGA-CG-5721-01 10 81056311 81056311 G A ZMIZ1 Silent p.R438R 0.21 TCGA-CG-5721-01 10 81373913 81373913 C T SFTPA1 3'UTR 0.23 TCGA-CG-5721-01 10 81706245 81706246 CT - SFTPD Frame_Shift_Del p.E57Gfs*108 0.25 TCGA-CG-5721-01 10 82033515 82033515 C G MAT1A 3'UTR 0.23 TCGA-CG-5721-01 10 87406932 87406932 C T GRID1 Intron 0.22 TCGA-CG-5721-01 10 87615784 87615784 A G GRID1 Splice_Site p.X371_splice 0.17 TCGA-CG-5721-01 10 88259565 88259565 T - WAPAL Frame_Shift_Del p.R479Efs*46 0.15 TCGA-CG-5721-01 10 88728350 88728350 G A ADIRF Missense_Mutation p.A17T 0.16 tolerated(0.18) benign(0.009) TCGA-CG-5721-01 10 88912390 88912390 A - FAM35A Frame_Shift_Del p.T429Hfs*3 0.11 TCGA-CG-5721-01 10 890939 890939 T - LARP4B Frame_Shift_Del p.T163Hfs*47 0.36 TCGA-CG-5721-01 10 89574266 89574266 A G ATAD1 Missense_Mutation p.Y31H 0.24 deleterious(0) probably_damaging(0.971) TCGA-CG-5721-01 10 91098570 91098570 T C IFIT3 Missense_Mutation p.M53T 0.16 tolerated(0.15) benign(0.056) TCGA-CG-5721-01 10 93185148 93185148 T C HECTD2 Silent p.V83V 0.21 TCGA-CG-5721-01 10 93596680 93596680 T C TNKS2 Silent p.G484G 0.16 TCGA-CG-5721-01 10 93740227 93740227 T C BTAF1 Missense_Mutation p.L556P 0.12 tolerated(0.28) benign(0.009) TCGA-CG-5721-01 10 93940759 93940759 A G CPEB3 Missense_Mutation p.F395L 0.16 tolerated(0.15) benign(0.015) TCGA-CG-5721-01 10 94070932 94070932 A C MARCH5 Missense_Mutation p.T26P 0.14 tolerated(0.29) possibly_damaging(0.722) TCGA-CG-5721-01 10 94834724 94834724 G A CYP26A1 Silent p.A201A 0.16 TCGA-CG-5721-01 10 95347278 95347278 T - FFAR4 Frame_Shift_Del p.C351Afs*12 0.21 TCGA-CG-5721-01 10 95399875 95399875 T C PDE6C Missense_Mutation p.F511L 0.20 deleterious(0) probably_damaging(0.998) TCGA-CG-5721-01 10 95399929 95399929 T - PDE6C Frame_Shift_Del p.F530Lfs*3 0.19 TCGA-CG-5721-01 10 95400298 95400298 T G PDE6C Missense_Mutation p.M574R 0.15 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 10 95458056 95458056 A G FRA10AC1 Splice_Site p.X58_splice 0.23 TCGA-CG-5721-01 10 95661347 95661347 T C SLC35G1 3'UTR 0.13 TCGA-CG-5721-01 10 96081696 96081696 G T PLCE1 Missense_Mutation p.E2127D 0.15 tolerated(0.08) probably_damaging(0.97) TCGA-CG-5721-01 10 96306134 96306134 G A HELLS Missense_Mutation p.G11D 0.25 tolerated_low_confidence(0.24) benign(0.05) TCGA-CG-5721-01 10 96493085 96493085 T C CYP2C18 Missense_Mutation p.V394A 0.16 deleterious(0.04) possibly_damaging(0.56) TCGA-CG-5721-01 10 97387227 97387227 A G ALDH18A1 Silent p.G350G 0.15 TCGA-CG-5721-01 10 97392721 97392721 A G ALDH18A1 Missense_Mutation p.V268A 0.15 deleterious(0) probably_damaging(0.996) TCGA-CG-5721-01 10 97916643 97916643 T A ZNF518A RNA 0.18 TCGA-CG-5721-01 10 97918869 97918869 A G ZNF518A RNA 0.30 TCGA-CG-5721-01 10 97920061 97920061 C T ZNF518A RNA 0.19 TCGA-CG-5721-01 10 98287919 98287919 C T TM9SF3 Silent p.T470T 0.18 TCGA-CG-5721-01 10 98743847 98743848 - C C10orf12 Frame_Shift_Ins p.V903Cfs*21 0.17 TCGA-CG-5721-01 10 99126849 99126849 T A RRP12 Missense_Mutation p.H999L 0.19 deleterious(0) benign(0.374) TCGA-CG-5721-01 10 99132949 99132949 G A RRP12 Missense_Mutation p.R679C 0.18 deleterious(0) possibly_damaging(0.462) TCGA-CG-5721-01 10 99148278 99148278 T C RRP12 Missense_Mutation p.K286R 0.22 deleterious(0.05) benign(0.027) TCGA-CG-5721-01 10 99330203 99330203 C T UBTD1 Missense_Mutation p.R203W 0.31 deleterious(0.02) probably_damaging(0.979) TCGA-CG-5721-01 10 99498302 99498302 T C ZFYVE27 Missense_Mutation p.L23P 0.21 tolerated_low_confidence(0.3) probably_damaging(0.975) TCGA-CG-5721-01 11 100221600 100221600 A G CNTN5 Silent p.S1066S 0.16 TCGA-CG-5721-01 11 101815143 101815143 T A KIAA1377 Splice_Site p.X132_splice 0.22 TCGA-CG-5721-01 11 1025234 1025234 A C MUC6 Missense_Mutation p.L978R 0.17 unknown(0) TCGA-CG-5721-01 11 102650475 102650475 T C MMP10 Missense_Mutation p.Q36R 0.13 tolerated(0.08) benign(0.02) TCGA-CG-5721-01 11 102713563 102713563 T - MMP3 Frame_Shift_Del p.I64Sfs*12 0.18 TCGA-CG-5721-01 11 103068666 103068666 T C DYNC2H1 Silent p.S2571S 0.50 TCGA-CG-5721-01 11 103907841 103907841 T C DDI1 Silent p.S97S 0.17 TCGA-CG-5721-01 11 104896908 104896908 T C CASP1 3'UTR 0.29 TCGA-CG-5721-01 11 104915354 104915354 A G CARD16 Silent p.F13F 0.19 TCGA-CG-5721-01 11 105732822 105732822 A - GRIA4 Frame_Shift_Del p.N188Ifs*11 0.20 TCGA-CG-5721-01 11 105758275 105758275 T C GRIA4 Missense_Mutation p.Y235H 0.15 deleterious(0.04) possibly_damaging(0.872) TCGA-CG-5721-01 11 105776013 105776013 A G GRIA4 Missense_Mutation p.T382A 0.24 tolerated(0.09) benign(0.002) TCGA-CG-5721-01 11 106810451 106810451 G A GUCY1A2 Missense_Mutation p.A314V 0.16 tolerated(0.19) benign(0.028) TCGA-CG-5721-01 11 107299652 107299652 A G CWF19L2 Missense_Mutation p.S436P 0.17 tolerated(0.27) benign(0.005) TCGA-CG-5721-01 11 107431569 107431571 CTT - ALKBH8 In_Frame_Del p.K17del 0.14 TCGA-CG-5721-01 11 107535915 107535915 A G ELMOD1 Missense_Mutation p.N333D 0.21 deleterious_low_confidence(0.02) probably_damaging(0.987) TCGA-CG-5721-01 11 107833174 107833174 T C RAB39A 3'UTR 0.18 TCGA-CG-5721-01 11 107965548 107965548 T C CUL5 Missense_Mutation p.V526A 0.15 deleterious(0.04) benign(0.057) TCGA-CG-5721-01 11 108017014 108017014 T C ACAT1 Missense_Mutation p.I364T 0.20 tolerated(0.56) possibly_damaging(0.532) TCGA-CG-5721-01 11 1081139 1081139 A G MUC2 Missense_Mutation p.T479A 0.21 benign(0.184) TCGA-CG-5721-01 11 108159816 108159816 C T ATM Missense_Mutation p.L1408F 0.14 deleterious(0) probably_damaging(0.963) TCGA-CG-5721-01 11 108202676 108202676 A G ATM Missense_Mutation p.N2567S 0.16 deleterious(0.02) benign(0.269) TCGA-CG-5721-01 11 108236086 108236086 C T ATM Missense_Mutation p.R3008C 0.16 deleterious(0) probably_damaging(0.988) TCGA-CG-5721-01 11 108345539 108345539 T C KDELC2 3'UTR 0.25 TCGA-CG-5721-01 11 108381751 108381751 T - EXPH5 Frame_Shift_Del p.M1495* 0.19 TCGA-CG-5721-01 11 108382343 108382343 T C EXPH5 Silent p.K1297K 0.16 TCGA-CG-5721-01 11 108389088 108389088 A G EXPH5 Missense_Mutation p.Y169H 0.17 tolerated(0.22) benign(0.018) TCGA-CG-5721-01 11 111385565 111385566 - C C11orf88 Frame_Shift_Ins p.L23Ifs*16 0.15 TCGA-CG-5721-01 11 111612842 111612842 A G PPP2R1B Missense_Mutation p.V575A 0.16 tolerated(0.71) benign(0.004) TCGA-CG-5721-01 11 111625257 111625257 G C PPP2R1B Missense_Mutation p.T332S 0.08 tolerated(0.37) benign(0.007) TCGA-CG-5721-01 11 111952892 111952892 G A C11orf57 Intron 0.35 TCGA-CG-5721-01 11 111953431 111953431 G A C11orf57 Missense_Mutation p.R206H 0.18 tolerated_low_confidence(0.1) benign(0.003) TCGA-CG-5721-01 11 113659978 113659978 C T ATF4P4 RNA 0.35 TCGA-CG-5721-01 11 113672318 113672318 A G USP28 Missense_Mutation p.L982P 0.17 deleterious(0.01) possibly_damaging(0.655) TCGA-CG-5721-01 11 113684655 113684655 A G USP28 Silent p.S565S 0.11 TCGA-CG-5721-01 11 113694409 113694409 T A USP28 Missense_Mutation p.S401C 0.18 deleterious(0.01) probably_damaging(0.976) TCGA-CG-5721-01 11 116717117 116717117 C T SIK3 Missense_Mutation p.V1263M 0.15 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-CG-5721-01 11 116719861 116719861 G A SIK3 Missense_Mutation p.T1159M 0.15 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CG-5721-01 11 117073798 117073798 C T TAGLN Silent p.D23D 0.30 TCGA-CG-5721-01 11 117098958 117098958 T C PCSK7 Missense_Mutation p.T193A 0.21 deleterious(0.01) probably_damaging(0.93) TCGA-CG-5721-01 11 117100293 117100293 C T PCSK7 Missense_Mutation p.G90R 0.22 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 11 117165972 117165972 T C BACE1 Missense_Mutation p.I148V 0.18 tolerated(0.14) benign(0.006) TCGA-CG-5721-01 11 117186277 117186277 T C BACE1 Missense_Mutation p.M79V 0.33 tolerated(0.16) benign(0.338) TCGA-CG-5721-01 11 117279701 117279701 A T CEP164 Missense_Mutation p.E1235D 0.07 tolerated(0.25) benign(0.013) TCGA-CG-5721-01 11 117301513 117301513 C T DSCAML1 Missense_Mutation p.A1931T 0.20 deleterious(0) probably_damaging(0.983) TCGA-CG-5721-01 11 117391895 117391895 G A DSCAML1 Missense_Mutation p.A448V 0.24 tolerated(0.47) benign(0.074) TCGA-CG-5721-01 11 118133782 118133782 T C MPZL2 Missense_Mutation p.Y30C 0.17 deleterious(0.01) probably_damaging(0.985) TCGA-CG-5721-01 11 118359442 118359442 T C KMT2A Silent p.C1482C 0.17 TCGA-CG-5721-01 11 118374582 118374582 C T KMT2A Nonsense_Mutation p.R2659* 0.18 TCGA-CG-5721-01 11 118454616 118454616 A G ARCN1 Silent p.A180A 0.18 TCGA-CG-5721-01 11 118514810 118514810 T C PHLDB1 Silent p.N1013N 0.12 TCGA-CG-5721-01 11 118630686 118630686 T - DDX6 Frame_Shift_Del p.N270Tfs*19 0.21 TCGA-CG-5721-01 11 118769574 118769574 G - BCL9L Frame_Shift_Del p.K1351Rfs*10 0.25 TCGA-CG-5721-01 11 118772844 118772844 T C BCL9L Silent p.E536E 0.19 TCGA-CG-5721-01 11 118772974 118772974 G - BCL9L Frame_Shift_Del p.P493Rfs*9 0.21 TCGA-CG-5721-01 11 118895642 118895642 C T SLC37A4 Missense_Mutation p.R445Q 0.20 tolerated(0.07) benign(0.011) TCGA-CG-5721-01 11 118899983 118899985 AGG - SLC37A4 In_Frame_Del p.S32del 0.21 TCGA-CG-5721-01 11 119044607 119044607 G A NLRX1 Missense_Mutation p.A217T 0.25 tolerated(0.77) benign(0.036) TCGA-CG-5721-01 11 119045201 119045201 C T NLRX1 Missense_Mutation p.R297C 0.22 tolerated(0.11) benign(0.022) TCGA-CG-5721-01 11 119209995 119209995 A G C1QTNF5 3'UTR 0.24 TCGA-CG-5721-01 11 11927031 11927031 A G USP47 Missense_Mutation p.D234G 0.22 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 11 119547833 119547833 G A PVRL1 Missense_Mutation p.A277V 0.32 tolerated(1) benign(0.007) TCGA-CG-5721-01 11 120175765 120175765 A T POU2F3 Silent p.G159G 0.19 TCGA-CG-5721-01 11 120996338 120996338 G A TECTA Missense_Mutation p.D511N 0.17 tolerated(0.19) possibly_damaging(0.567) TCGA-CG-5721-01 11 122722513 122722513 C T CRTAM Silent p.S102S 0.19 TCGA-CG-5721-01 11 123508962 123508962 C A SCN3B Missense_Mutation p.W172C 0.16 deleterious(0) probably_damaging(0.909) TCGA-CG-5721-01 11 124189338 124189338 A - OR8D2 Frame_Shift_Del p.F252Lfs*4 0.19 TCGA-CG-5721-01 11 124252768 124252768 C T OR8B2 Missense_Mutation p.A158T 0.31 deleterious_low_confidence(0.04) possibly_damaging(0.741) TCGA-CG-5721-01 11 124496881 124496881 A C TBRG1 Missense_Mutation p.M225L 0.19 tolerated(0.39) benign(0.023) TCGA-CG-5721-01 11 124757724 124757724 G A ROBO4 Missense_Mutation p.A654V 0.19 tolerated(0.49) benign(0.009) TCGA-CG-5721-01 11 124967560 124967562 AAG - TMEM218 In_Frame_Del p.F96del 0.24 TCGA-CG-5721-01 11 125298986 125298986 T C PKNOX2 Splice_Site p.X338_splice 0.18 TCGA-CG-5721-01 11 125301395 125301395 G T PKNOX2 3'UTR 0.50 TCGA-CG-5721-01 11 12530142 12530142 A G PARVA Silent p.G263G 0.19 TCGA-CG-5721-01 11 125476321 125476321 C T STT3A Silent p.G247G 0.19 TCGA-CG-5721-01 11 125618635 125618635 A G PATE1 3'UTR 0.23 TCGA-CG-5721-01 11 125763564 125763567 TTTC - PUS3 3'UTR 0.36 TCGA-CG-5721-01 11 1258211 1258211 C A MUC5B Silent p.A1038A 0.30 TCGA-CG-5721-01 11 125880279 125880279 T C CDON Silent p.A503A 0.21 TCGA-CG-5721-01 11 126110831 126110831 T C FAM118B Silent p.I77I 0.05 TCGA-CG-5721-01 11 126132063 126132063 C T FAM118B 3'UTR 0.20 TCGA-CG-5721-01 11 126139210 126139210 T C FOXRED1 Intron 0.11 TCGA-CG-5721-01 11 126141443 126141443 T C FOXRED1 Missense_Mutation p.V66A 0.19 deleterious(0) probably_damaging(0.981) TCGA-CG-5721-01 11 1265090 1265090 G A MUC5B Missense_Mutation p.S2327N 0.17 unknown(0) TCGA-CG-5721-01 11 1269737 1269737 C - MUC5B Frame_Shift_Del p.S3878Pfs*27 0.32 TCGA-CG-5721-01 11 12785729 12785729 T C TEAD1 5'UTR 0.18 TCGA-CG-5721-01 11 128805564 128805564 T A TP53AIP1 Silent p.T99T 0.19 TCGA-CG-5721-01 11 129724713 129724713 T C TMEM45B Splice_Site p.X129_splice 0.27 TCGA-CG-5721-01 11 130079714 130079714 T C ST14 Missense_Mutation p.V855A 0.18 deleterious(0) possibly_damaging(0.818) TCGA-CG-5721-01 11 130331434 130331434 T C ADAMTS15 Silent p.G336G 0.17 TCGA-CG-5721-01 11 133806051 133806051 C T IGSF9B Missense_Mutation p.V240I 0.27 tolerated(0.05) probably_damaging(0.996) TCGA-CG-5721-01 11 134114906 134114906 T C VPS26B Missense_Mutation p.F266L 0.12 deleterious(0.02) probably_damaging(1) TCGA-CG-5721-01 11 134118247 134118247 A G THYN1 3'UTR 0.22 TCGA-CG-5721-01 11 134253954 134253954 C T B3GAT1 Missense_Mutation p.D81N 0.27 tolerated(0.16) benign(0.004) TCGA-CG-5721-01 11 14316397 14316397 C T RRAS2 Missense_Mutation p.A70T 0.22 deleterious(0) possibly_damaging(0.857) TCGA-CG-5721-01 11 14486521 14486521 G A COPB1 Silent p.F782F 0.16 TCGA-CG-5721-01 11 14515965 14515965 T A COPB1 Nonsense_Mutation p.K38* 0.13 TCGA-CG-5721-01 11 14839924 14839924 G A PDE3B Missense_Mutation p.S573N 0.12 tolerated(0.16) benign(0.003) TCGA-CG-5721-01 11 14913534 14913534 T C CYP2R1 Missense_Mutation p.Y73C 0.21 deleterious(0.01) possibly_damaging(0.831) TCGA-CG-5721-01 11 1579347 1579347 A G DUSP8 Missense_Mutation p.F231S 0.18 deleterious(0.01) benign(0.331) TCGA-CG-5721-01 11 1605600 1605600 G A KRTAP5-1 3'UTR 0.18 TCGA-CG-5721-01 11 1651339 1651339 G C KRTAP5-5 Missense_Mutation p.G90A 0.04 deleterious_low_confidence(0.01) unknown(0) TCGA-CG-5721-01 11 17409176 17409176 C T KCNJ11 Missense_Mutation p.V155M 0.19 deleterious(0.05) possibly_damaging(0.663) TCGA-CG-5721-01 11 17531325 17531325 G A USH1C Missense_Mutation p.R531C 0.13 deleterious_low_confidence(0.02) probably_damaging(0.991) TCGA-CG-5721-01 11 17531971 17531971 G A USH1C Missense_Mutation p.A504V 0.14 tolerated_low_confidence(0.77) benign(0.006) TCGA-CG-5721-01 11 17743148 17743148 G A MYOD1 3'UTR 0.42 TCGA-CG-5721-01 11 1774614 1774614 G C CTSD 3'UTR 0.19 TCGA-CG-5721-01 11 1775320 1775320 G T CTSD Silent p.A292A 0.17 TCGA-CG-5721-01 11 18369105 18369105 A T GTF2H1 Intron 0.19 TCGA-CG-5721-01 11 18631653 18631653 G A SPTY2D1 Intron 0.25 TCGA-CG-5721-01 11 18636367 18636367 G - SPTY2D1 Frame_Shift_Del p.P485Rfs*12 0.32 TCGA-CG-5721-01 11 1955030 1955032 AGG - TNNT3 In_Frame_Del p.E88del 0.14 TCGA-CG-5721-01 11 20122663 20122663 G A NAV2 Missense_Mutation p.R2180Q 0.17 tolerated(0.15) probably_damaging(0.98) TCGA-CG-5721-01 11 20629055 20629055 T C SLC6A5 Missense_Mutation p.V281A 0.17 tolerated(0.22) benign(0.055) TCGA-CG-5721-01 11 22301380 22301380 G A ANO5 3'UTR 0.26 TCGA-CG-5721-01 11 26587159 26587159 C T MUC15 Missense_Mutation p.G110R 0.20 tolerated_low_confidence(0.44) benign(0.094) TCGA-CG-5721-01 11 2683443 2683443 C T KCNQ1 Intron 0.27 TCGA-CG-5721-01 11 27016030 27016030 A - FIBIN 5'UTR 0.25 TCGA-CG-5721-01 11 27016599 27016599 A G FIBIN Missense_Mutation p.T176A 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.457) TCGA-CG-5721-01 11 27141369 27141369 A G BBOX1 Silent p.V271V 0.23 TCGA-CG-5721-01 11 27384534 27384534 G - CCDC34 Frame_Shift_Del p.G71Afs*40 0.18 TCGA-CG-5721-01 11 281524 281524 C G NLRP6 Missense_Mutation p.A597G 0.24 tolerated(0.26) benign(0.055) TCGA-CG-5721-01 11 30032677 30032677 A G KCNA4 Missense_Mutation p.W517R 0.16 deleterious(0) probably_damaging(0.998) TCGA-CG-5721-01 11 31312290 31312290 T C DCDC1 Silent p.K288K 0.26 TCGA-CG-5721-01 11 3141762 3141762 C A OSBPL5 Missense_Mutation p.W165C 0.14 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 11 3141800 3141800 C - OSBPL5 Frame_Shift_Del p.V153Cfs*49 0.25 TCGA-CG-5721-01 11 31824298 31824298 A G PAX6 Missense_Mutation p.L32P 0.12 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 11 32118854 32118854 A G RCN1 Missense_Mutation p.Y140C 0.16 deleterious(0) possibly_damaging(0.827) TCGA-CG-5721-01 11 32635338 32635338 A G CCDC73 Silent p.N842N 0.20 TCGA-CG-5721-01 11 33763456 33763456 A - FBXO3 Frame_Shift_Del p.*472S 0.28 TCGA-CG-5721-01 11 33780074 33780074 A G FBXO3 Silent p.C144C 0.15 TCGA-CG-5721-01 11 3381419 3381419 T - ZNF195 Frame_Shift_Del p.K273Nfs*102 0.18 TCGA-CG-5721-01 11 34180846 34180846 A - ABTB2 Frame_Shift_Del p.Q899Rfs*2 0.15 TCGA-CG-5721-01 11 3423918 3423918 G A TSSC2 RNA 0.20 TCGA-CG-5721-01 11 34680429 34680429 T C EHF Missense_Mutation p.V307A 0.29 deleterious(0) probably_damaging(0.996) TCGA-CG-5721-01 11 34991757 34991757 T C PDHX Silent p.S296S 0.13 TCGA-CG-5721-01 11 35641182 35641182 C T FJX1 Missense_Mutation p.A333V 0.34 tolerated(0.29) possibly_damaging(0.752) TCGA-CG-5721-01 11 3680410 3680410 A - ART1 5'UTR 0.18 TCGA-CG-5721-01 11 3744545 3744545 T C NUP98 Missense_Mutation p.N663S 0.17 tolerated(0.78) benign(0.002) TCGA-CG-5721-01 11 375700 375700 G - B4GALNT4 Frame_Shift_Del p.R307Vfs*100 0.19 TCGA-CG-5721-01 11 40136377 40136377 A G LRRC4C Missense_Mutation p.V489A 0.20 tolerated(0.67) benign(0) TCGA-CG-5721-01 11 4150330 4150330 T C RRM1 Silent p.V573V 0.21 TCGA-CG-5721-01 11 4159522 4159522 T C RRM1 Missense_Mutation p.V763A 0.16 tolerated_low_confidence(0.88) benign(0) TCGA-CG-5721-01 11 43363975 43363975 T C API5 Intron 0.16 TCGA-CG-5721-01 11 43427103 43427103 A G TTC17 Missense_Mutation p.T507A 0.15 tolerated(0.82) benign(0) TCGA-CG-5721-01 11 44072889 44072889 C T ACCSL Missense_Mutation p.R214W 0.15 deleterious(0.05) benign(0.284) TCGA-CG-5721-01 11 4471390 4471390 T C OR52K2 Missense_Mutation p.V274A 0.24 deleterious(0.02) benign(0.047) TCGA-CG-5721-01 11 4510299 4510299 C A OR52K1 Missense_Mutation p.L57I 0.25 deleterious(0) probably_damaging(0.998) TCGA-CG-5721-01 11 45671419 45671419 T C CHST1 Missense_Mutation p.N352S 0.20 deleterious(0.01) possibly_damaging(0.519) TCGA-CG-5721-01 11 45947887 45947887 T C GYLTL1B Missense_Mutation p.S333P 0.14 deleterious(0.03) benign(0.078) TCGA-CG-5721-01 11 45992799 45992799 G A PHF21A Silent p.T160T 0.21 TCGA-CG-5721-01 11 46564329 46564329 C A AMBRA1 Missense_Mutation p.G323V 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.66) TCGA-CG-5721-01 11 46727107 46727107 G A ZNF408 Silent p.P619P 0.26 TCGA-CG-5721-01 11 46747671 46747671 C T F2 Silent p.C274C 0.18 TCGA-CG-5721-01 11 46747718 46747718 A G F2 Missense_Mutation p.Y290C 0.18 deleterious(0.01) probably_damaging(0.997) TCGA-CG-5721-01 11 4674795 4674795 A - OR51E1 3'UTR 0.16 TCGA-CG-5721-01 11 46765729 46765729 T C CKAP5 Silent p.K1981K 0.23 TCGA-CG-5721-01 11 46914603 46914603 G T LRP4 Missense_Mutation p.L540M 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-CG-5721-01 11 4702990 4702990 C A OR51E2 Nonsense_Mutation p.G318* 0.16 TCGA-CG-5721-01 11 47196853 47196853 A - ARFGAP2 Frame_Shift_Del p.R93Afs*43 0.23 TCGA-CG-5721-01 11 47203980 47203980 C T PACSIN3 Missense_Mutation p.R62Q 0.22 deleterious(0) possibly_damaging(0.448) TCGA-CG-5721-01 11 47236532 47236532 A G DDB2 5'UTR 0.16 TCGA-CG-5721-01 11 47436421 47436421 G A SLC39A13 Missense_Mutation p.A294T 0.21 tolerated(0.07) possibly_damaging(0.577) TCGA-CG-5721-01 11 47681718 47681718 G T AGBL2 3'UTR 0.17 TCGA-CG-5721-01 11 47837550 47837550 T G NUP160 Missense_Mutation p.D488A 0.16 tolerated(0.1) probably_damaging(0.995) TCGA-CG-5721-01 11 4790303 4790303 T C OR51F1 Missense_Mutation p.Y282C 0.25 deleterious(0.01) benign(0.151) TCGA-CG-5721-01 11 48152056 48152056 C T PTPRJ Missense_Mutation p.T468M 0.14 tolerated(0.1) benign(0.109) TCGA-CG-5721-01 11 48347301 48347301 T C OR4C3 Missense_Mutation p.I270T 0.15 tolerated(1) benign(0.001) TCGA-CG-5721-01 11 4903765 4903765 C T OR51T1 Silent p.D239D 0.19 TCGA-CG-5721-01 11 49197411 49197411 T C FOLH1 Missense_Mutation p.Q340R 0.20 tolerated(1) benign(0) TCGA-CG-5721-01 11 4945549 4945549 G A OR51G1 Silent p.S7S 0.20 TCGA-CG-5721-01 11 4967443 4967443 T C OR51A4 Silent p.K296K 0.21 TCGA-CG-5721-01 11 4967610 4967610 T C OR51A4 Missense_Mutation p.T241A 0.18 deleterious(0) possibly_damaging(0.558) TCGA-CG-5721-01 11 4967644 4967644 A G OR51A4 Silent p.I229I 0.20 TCGA-CG-5721-01 11 498027 498027 G A RNH1 Silent p.G357G 0.18 TCGA-CG-5721-01 11 49805433 49805433 T C RP11-707M1.1 RNA 0.17 TCGA-CG-5721-01 11 51515506 51515506 T C OR4C46 Silent p.N75N 0.23 TCGA-CG-5721-01 11 5255572 5255572 C T HBD Missense_Mutation p.R31K 0.17 deleterious(0.03) probably_damaging(0.995) TCGA-CG-5721-01 11 5373179 5373179 A G OR51B6 Missense_Mutation p.T148A 0.20 tolerated(0.26) benign(0.002) TCGA-CG-5721-01 11 5411261 5411261 A G OR51M1 Silent p.G211G 0.15 TCGA-CG-5721-01 11 55135662 55135662 T C OR4A15 Silent p.Y101Y 0.14 TCGA-CG-5721-01 11 55339775 55339775 T G OR4C16 Missense_Mutation p.F58V 0.21 deleterious(0) benign(0.028) TCGA-CG-5721-01 11 55371683 55371683 G T OR4C11 Missense_Mutation p.P56H 0.15 deleterious(0) probably_damaging(0.922) TCGA-CG-5721-01 11 55681578 55681578 T C OR5W2 Missense_Mutation p.T161A 0.16 tolerated(0.23) benign(0.026) TCGA-CG-5721-01 11 55761672 55761672 T - OR5F1 Frame_Shift_Del p.M144Wfs*11 0.31 TCGA-CG-5721-01 11 55798339 55798339 T C OR5AS1 Missense_Mutation p.Y149H 0.20 deleterious(0.02) probably_damaging(0.986) TCGA-CG-5721-01 11 55861664 55861664 A G OR8I2 Missense_Mutation p.K294R 0.15 tolerated(0.08) benign(0.006) TCGA-CG-5721-01 11 55890420 55890420 A G OR8H3 Missense_Mutation p.D191G 0.18 deleterious(0.01) benign(0.443) TCGA-CG-5721-01 11 55904915 55904915 A T OR8J3 Missense_Mutation p.F94I 0.15 deleterious(0.01) benign(0.199) TCGA-CG-5721-01 11 55944776 55944776 T G OR5J2 Missense_Mutation p.I228S 0.19 deleterious(0) probably_damaging(0.934) TCGA-CG-5721-01 11 56020656 56020656 A - OR5T3 Frame_Shift_Del p.K329Rfs*3 0.09 TCGA-CG-5721-01 11 56043602 56043602 C T OR5T1 Missense_Mutation p.A163V 0.17 tolerated(0.63) benign(0.005) TCGA-CG-5721-01 11 56128242 56128242 A G OR8J1 Missense_Mutation p.I174V 0.06 tolerated(0.09) benign(0.107) TCGA-CG-5721-01 11 56128506 56128506 C G OR8J1 Missense_Mutation p.P262A 0.18 deleterious(0) probably_damaging(0.973) TCGA-CG-5721-01 11 5625792 5625792 T G TRIM6 Missense_Mutation p.L179R 0.21 deleterious(0) probably_damaging(0.996) TCGA-CG-5721-01 11 563560 563560 G A RASSF7 Missense_Mutation p.G346D 0.22 tolerated_low_confidence(0.1) benign(0.164) TCGA-CG-5721-01 11 563570 563570 C T RASSF7 Silent p.D349D 0.17 TCGA-CG-5721-01 11 56756569 56756569 T - OR5AK2 Frame_Shift_Del p.L63Yfs*29 0.20 TCGA-CG-5721-01 11 57003976 57003976 C T APLNR Missense_Mutation p.R168H 0.17 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 11 57004036 57004036 A G APLNR Missense_Mutation p.V148A 0.16 tolerated(1) benign(0.004) TCGA-CG-5721-01 11 57077118 57077119 CT - TNKS1BP1 Frame_Shift_Del p.G1023Ifs*8 0.16 TCGA-CG-5721-01 11 57077573 57077574 TC - TNKS1BP1 Frame_Shift_Del p.D871Ffs*7 0.19 TCGA-CG-5721-01 11 57182546 57182546 C T SLC43A3 Missense_Mutation p.R268H 0.25 tolerated(0.18) benign(0.015) TCGA-CG-5721-01 11 57319863 57319863 T C UBE2L6 Missense_Mutation p.T144A 0.09 deleterious(0.04) probably_damaging(1) TCGA-CG-5721-01 11 57428563 57428563 T C CLP1 Silent p.C311C 0.19 TCGA-CG-5721-01 11 57466793 57466793 C A ZDHHC5 Missense_Mutation p.P629T 0.17 deleterious(0.01) benign(0.025) TCGA-CG-5721-01 11 57564331 57564331 T C CTNND1 Missense_Mutation p.F275L 0.17 tolerated(0.18) benign(0.146) TCGA-CG-5721-01 11 57574389 57574389 A - CTNND1 Frame_Shift_Del p.K634Nfs*3 0.24 TCGA-CG-5721-01 11 57886082 57886082 T C OR9I1 Missense_Mutation p.T279A 0.21 deleterious(0.04) benign(0.436) TCGA-CG-5721-01 11 57958080 57958080 T C OR9Q2 Silent p.L40L 0.27 TCGA-CG-5721-01 11 57995544 57995544 C T OR10Q1 Silent p.R268R 0.15 TCGA-CG-5721-01 11 5810021 5810021 A G OR52N1 Missense_Mutation p.L9P 0.16 tolerated(0.1) possibly_damaging(0.775) TCGA-CG-5721-01 11 58170499 58170499 T A OR5B3 Silent p.L128L 0.18 TCGA-CG-5721-01 11 58190571 58190572 - A OR5B2 Frame_Shift_Ins p.T55Ifs*9 0.10 TCGA-CG-5721-01 11 58190667 58190667 A C OR5B2 Missense_Mutation p.I23S 0.17 deleterious_low_confidence(0.03) benign(0.002) TCGA-CG-5721-01 11 58477923 58477923 T C GLYAT Intron 0.26 TCGA-CG-5721-01 11 59283042 59283042 G A OR4D9 Silent p.T219T 0.17 TCGA-CG-5721-01 11 59424057 59424057 G T PATL1 Missense_Mutation p.P213H 0.15 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 11 59425039 59425039 T C PATL1 Silent p.P195P 0.17 TCGA-CG-5721-01 11 59574011 59574011 C T MRPL16 Missense_Mutation p.A189T 0.22 tolerated(0.06) possibly_damaging(0.61) TCGA-CG-5721-01 11 605153 605153 C T PHRF1 Missense_Mutation p.T396M 0.22 deleterious(0.01) possibly_damaging(0.742) TCGA-CG-5721-01 11 60557963 60557963 A G MS4A10 Missense_Mutation p.K52R 0.18 tolerated(0.29) benign(0.186) TCGA-CG-5721-01 11 60689377 60689377 C T TMEM109 Missense_Mutation p.R158W 0.14 tolerated(0.07) probably_damaging(1) TCGA-CG-5721-01 11 60704386 60704386 A G TMEM132A 3'UTR 0.23 TCGA-CG-5721-01 11 61018890 61018890 G A PGA5 3'UTR 0.13 TCGA-CG-5721-01 11 61106890 61106890 A C DAK Missense_Mutation p.T157P 0.20 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 11 61111397 61111397 G A DAK Missense_Mutation p.R351Q 0.24 tolerated(0.32) benign(0.297) TCGA-CG-5721-01 11 61511005 61511005 A G DAGLA Missense_Mutation p.S725G 0.15 tolerated_low_confidence(0.06) benign(0.183) TCGA-CG-5721-01 11 61631274 61631274 C T FADS2 Intron 0.15 TCGA-CG-5721-01 11 61665591 61665591 G A RAB3IL1 3'UTR 0.21 TCGA-CG-5721-01 11 61675578 61675578 A T RAB3IL1 Missense_Mutation p.I71N 0.17 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 11 62012203 62012203 T C SCGB1D2 3'UTR 0.19 TCGA-CG-5721-01 11 62285758 62285758 A G AHNAK Silent p.S5377S 0.19 TCGA-CG-5721-01 11 62297276 62297276 T C AHNAK Missense_Mutation p.D1538G 0.22 possibly_damaging(0.702) TCGA-CG-5721-01 11 62299953 62299953 G A AHNAK Missense_Mutation p.P646S 0.18 benign(0.053) TCGA-CG-5721-01 11 6232207 6232207 G A C11orf42 Missense_Mutation p.D313N 0.16 tolerated_low_confidence(0.05) benign(0.024) TCGA-CG-5721-01 11 62342880 62342880 A G TUT1 Missense_Mutation p.W809R 0.28 tolerated(0.26) probably_damaging(0.917) TCGA-CG-5721-01 11 62364226 62364226 C A MTA2 Missense_Mutation p.Q255H 0.11 tolerated(0.05) probably_damaging(0.953) TCGA-CG-5721-01 11 62397917 62397917 G T GANAB Missense_Mutation p.L505M 0.25 deleterious(0.03) benign(0.025) TCGA-CG-5721-01 11 62417003 62417003 A G INTS5 Silent p.C183C 0.19 TCGA-CG-5721-01 11 62439509 62439509 A G C11orf83 Missense_Mutation p.T69A 0.17 tolerated(0.69) benign(0.388) TCGA-CG-5721-01 11 6244318 6244318 C T FAM160A2 Missense_Mutation p.V310I 0.18 deleterious(0.02) benign(0.111) TCGA-CG-5721-01 11 62446168 62446168 A G UBXN1 Missense_Mutation p.M36T 0.37 deleterious(0) probably_damaging(0.993) TCGA-CG-5721-01 11 62520195 62520195 T G ZBTB3 Missense_Mutation p.E364D 0.05 deleterious(0.03) possibly_damaging(0.88) TCGA-CG-5721-01 11 62567805 62567805 G - NXF1 Intron 0.29 TCGA-CG-5721-01 11 6261527 6261527 G A CNGA4 Missense_Mutation p.R168H 0.25 deleterious(0.01) probably_damaging(1) TCGA-CG-5721-01 11 62751091 62751091 T C SLC22A6 Silent p.A182A 0.50 TCGA-CG-5721-01 11 6292348 6292348 A G CCKBR Missense_Mutation p.T307A 0.25 tolerated(0.26) benign(0.002) TCGA-CG-5721-01 11 62931516 62931516 A G SLC22A25 Missense_Mutation p.F475S 0.21 tolerated(0.2) benign(0.01) TCGA-CG-5721-01 11 63273820 63273820 A C LGALS12 5'Flank 0.14 TCGA-CG-5721-01 11 63320397 63320397 T A HRASLS2 3'UTR 0.14 TCGA-CG-5721-01 11 63487482 63487482 C T RTN3 Missense_Mutation p.T503I 0.17 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 11 63681926 63681926 C T RCOR2 Missense_Mutation p.A190T 0.14 tolerated(0.06) probably_damaging(0.953) TCGA-CG-5721-01 11 63884888 63884888 G A FLRT1 Silent p.P383P 0.20 TCGA-CG-5721-01 11 63965054 63965054 C T STIP1 Nonsense_Mutation p.R297* 0.27 TCGA-CG-5721-01 11 64120560 64120560 C T CCDC88B Missense_Mutation p.R1179W 0.33 tolerated(0.06) probably_damaging(0.999) TCGA-CG-5721-01 11 64359294 64359294 G A SLC22A12 Missense_Mutation p.R89H 0.28 tolerated(0.21) probably_damaging(0.912) TCGA-CG-5721-01 11 64398015 64398015 C T NRXN2 Missense_Mutation p.V1206M 0.28 tolerated(0.13) probably_damaging(0.997) TCGA-CG-5721-01 11 64419563 64419563 C T NRXN2 Missense_Mutation p.R827K 0.27 tolerated(0.26) benign(0.045) TCGA-CG-5721-01 11 64677290 64677290 T C ATG2A Missense_Mutation p.D657G 0.19 deleterious(0.01) benign(0.165) TCGA-CG-5721-01 11 64702546 64702546 G A GPHA2 Missense_Mutation p.R69W 0.26 deleterious(0.01) probably_damaging(0.989) TCGA-CG-5721-01 11 64811817 64811817 T C SAC3D1 Missense_Mutation p.F232S 0.10 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 11 64855573 64855573 T C ZFPL1 Missense_Mutation p.V307A 0.19 deleterious(0) probably_damaging(0.949) TCGA-CG-5721-01 11 64876190 64876190 C T VPS51 Missense_Mutation p.A416V 0.19 tolerated(0.28) benign(0.001) TCGA-CG-5721-01 11 64880808 64880808 G A TM7SF2 Missense_Mutation p.A141T 0.22 tolerated(0.1) benign(0.012) TCGA-CG-5721-01 11 64940375 64940375 G A SPDYC Missense_Mutation p.R246H 0.21 tolerated_low_confidence(0.56) benign(0.001) TCGA-CG-5721-01 11 65123616 65123616 A G TIGD3 Missense_Mutation p.M113V 0.21 tolerated(0.54) benign(0.078) TCGA-CG-5721-01 11 65143909 65143909 C T SLC25A45 Missense_Mutation p.S279N 0.25 deleterious(0.02) possibly_damaging(0.794) TCGA-CG-5721-01 11 65268497 65268497 A G MALAT1 RNA 0.19 TCGA-CG-5721-01 11 65269794 65269794 A G MALAT1 RNA 0.14 TCGA-CG-5721-01 11 65271405 65271405 A G MALAT1 RNA 0.34 TCGA-CG-5721-01 11 65351025 65351025 T C EHBP1L1 Missense_Mutation p.V961A 0.29 tolerated(0.1) benign(0.01) TCGA-CG-5721-01 11 65396413 65396413 A G PCNXL3 Missense_Mutation p.D1312G 0.19 deleterious(0.01) possibly_damaging(0.893) TCGA-CG-5721-01 11 6540902 6540902 G T DNHD1 Missense_Mutation p.G489C 0.19 possibly_damaging(0.873) TCGA-CG-5721-01 11 65562117 65562117 G A OVOL1 Missense_Mutation p.V143I 0.23 deleterious(0.04) benign(0.053) TCGA-CG-5721-01 11 65635808 65635808 T C EFEMP2 Missense_Mutation p.D311G 0.13 tolerated(0.18) benign(0.232) TCGA-CG-5721-01 11 65650552 65650552 A G CTSW Missense_Mutation p.Y253C 0.05 deleterious(0.01) probably_damaging(0.951) TCGA-CG-5721-01 11 65734962 65734962 G A SART1 Missense_Mutation p.R445H 0.39 tolerated(0.24) probably_damaging(0.922) TCGA-CG-5721-01 11 65745360 65745360 C T SART1 Missense_Mutation p.T721I 0.23 deleterious(0) possibly_damaging(0.697) TCGA-CG-5721-01 11 65811111 65811111 G A GAL3ST3 Missense_Mutation p.R55W 0.24 tolerated(0.07) possibly_damaging(0.448) TCGA-CG-5721-01 11 65829239 65829239 T C SF3B2 Missense_Mutation p.V621A 0.18 tolerated(0.14) possibly_damaging(0.577) TCGA-CG-5721-01 11 6592035 6592035 C T DNHD1 Silent p.G4431G 0.22 TCGA-CG-5721-01 11 66083132 66083132 G A CD248 Missense_Mutation p.T456M 0.21 tolerated_low_confidence(0.1) benign(0.022) TCGA-CG-5721-01 11 66335072 66335072 C T CTSF Missense_Mutation p.G125D 0.17 tolerated(0.31) benign(0.02) TCGA-CG-5721-01 11 66358970 66358970 T C CCDC87 Missense_Mutation p.H506R 0.04 deleterious(0) possibly_damaging(0.799) TCGA-CG-5721-01 11 66392441 66392441 A G RBM14 Missense_Mutation p.Y365C 0.14 deleterious(0.01) unknown(0) TCGA-CG-5721-01 11 66393007 66393007 C T RBM14 Missense_Mutation p.P554S 0.17 deleterious(0.04) unknown(0) TCGA-CG-5721-01 11 66411167 66411167 C T RBM14-RBM4 Missense_Mutation p.A195V 0.21 tolerated(0.24) unknown(0) TCGA-CG-5721-01 11 66436153 66436153 T C RBM4B Missense_Mutation p.D341G 0.19 tolerated(0.38) benign(0.006) TCGA-CG-5721-01 11 66436301 66436301 C T RBM4B Missense_Mutation p.A292T 0.17 tolerated(0.52) benign(0.142) TCGA-CG-5721-01 11 66468627 66468627 G A SPTBN2 Silent p.I981I 0.24 TCGA-CG-5721-01 11 6648358 6648359 - G DCHS1 Frame_Shift_Ins p.R1971Pfs*19 0.23 TCGA-CG-5721-01 11 6662222 6662222 A G DCHS1 Missense_Mutation p.V208A 0.19 deleterious(0.03) possibly_damaging(0.513) TCGA-CG-5721-01 11 67191326 67191326 C T CARNS1 Nonsense_Mutation p.R703* 0.18 TCGA-CG-5721-01 11 67223796 67223796 G A CABP4 Missense_Mutation p.D142N 0.28 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 11 67267701 67267701 C A PITPNM1 Missense_Mutation p.A278S 0.22 tolerated(0.3) benign(0.01) TCGA-CG-5721-01 11 67399796 67399796 C T TBX10 Silent p.R287R 0.15 TCGA-CG-5721-01 11 67410319 67410319 T C ACY3 Missense_Mutation p.Y279C 0.23 deleterious(0) probably_damaging(0.991) TCGA-CG-5721-01 11 67564257 67564257 G A FAM86C2P RNA 0.18 TCGA-CG-5721-01 11 6789715 6789715 T C OR2AG2 Silent p.G158G 0.22 TCGA-CG-5721-01 11 679734 679734 G A DEAF1 Silent p.V360V 0.15 TCGA-CG-5721-01 11 68029961 68029961 C T C11orf24 Missense_Mutation p.A168T 0.15 tolerated(0.63) unknown(0) TCGA-CG-5721-01 11 68192577 68192577 T C LRP5 Missense_Mutation p.Y1082H 0.08 deleterious(0) probably_damaging(0.987) TCGA-CG-5721-01 11 68475936 68475936 A G MTL5 Missense_Mutation p.V456A 0.20 tolerated(0.08) probably_damaging(0.997) TCGA-CG-5721-01 11 68525043 68525043 A G CPT1A 3'UTR 0.22 TCGA-CG-5721-01 11 68678967 68678967 G A IGHMBP2 Missense_Mutation p.A203T 0.23 tolerated(0.05) possibly_damaging(0.764) TCGA-CG-5721-01 11 68705747 68705747 A C IGHMBP2 Silent p.T903T 0.22 TCGA-CG-5721-01 11 68846360 68846360 A T TPCN2 Missense_Mutation p.I471F 0.19 deleterious(0.01) possibly_damaging(0.752) TCGA-CG-5721-01 11 6942479 6942479 T C OR2D3 Missense_Mutation p.S83P 0.19 deleterious(0) probably_damaging(0.988) TCGA-CG-5721-01 11 6942864 6942864 C - OR2D3 Frame_Shift_Del p.T211Kfs*11 0.16 TCGA-CG-5721-01 11 69482723 69482723 A G ORAOV1 Silent p.D95D 0.21 TCGA-CG-5721-01 11 69486577 69486577 T C ORAOV1 Missense_Mutation p.Y56C 0.18 deleterious(0) possibly_damaging(0.908) TCGA-CG-5721-01 11 70220937 70220937 T C PPFIA1 Intron 0.14 TCGA-CG-5721-01 11 70265913 70265913 C A CTTN Silent p.A210A 0.21 TCGA-CG-5721-01 11 70282622 70282622 A G CTTN 3'UTR 0.14 TCGA-CG-5721-01 11 70331959 70331959 G - SHANK2 Frame_Shift_Del p.P1481Lfs*73 0.34 TCGA-CG-5721-01 11 70333642 70333642 G A SHANK2 Missense_Mutation p.T920M 0.22 deleterious(0.01) benign(0.442) TCGA-CG-5721-01 11 7059912 7059912 T C NLRP14 Missense_Mutation p.L32S 0.28 tolerated(0.26) benign(0.166) TCGA-CG-5721-01 11 71714536 71714536 G A NUMA1 3'UTR 0.20 TCGA-CG-5721-01 11 71726677 71726677 A G NUMA1 Silent p.L624L 0.15 TCGA-CG-5721-01 11 71943988 71943988 C T INPPL1 Missense_Mutation p.R641W 0.15 deleterious(0) probably_damaging(0.997) TCGA-CG-5721-01 11 72288519 72288519 G A PDE2A Missense_Mutation p.S912L 0.16 deleterious(0.01) probably_damaging(0.923) TCGA-CG-5721-01 11 72294542 72294542 T - PDE2A Frame_Shift_Del p.V557* 0.19 TCGA-CG-5721-01 11 72408664 72408664 A G ARAP1 Missense_Mutation p.L923P 0.16 deleterious(0) possibly_damaging(0.522) TCGA-CG-5721-01 11 72945161 72945161 G A P2RY2 5'UTR 0.14 TCGA-CG-5721-01 11 73584464 73584464 T C COA4 Intron 0.18 TCGA-CG-5721-01 11 73638354 73638354 T C PAAF1 Missense_Mutation p.Y376H 0.15 deleterious(0) probably_damaging(0.996) TCGA-CG-5721-01 11 73714733 73714733 T - UCP3 Intron 0.27 TCGA-CG-5721-01 11 73716934 73716934 C T UCP3 Missense_Mutation p.A128T 0.19 deleterious(0) probably_damaging(0.951) TCGA-CG-5721-01 11 73824826 73824826 T C C2CD3 Silent p.G614G 0.23 TCGA-CG-5721-01 11 74554950 74554950 C A XRRA1 Missense_Mutation p.D692Y 0.16 deleterious(0.01) probably_damaging(0.977) TCGA-CG-5721-01 11 7488101 7488101 T - SYT9 3'UTR 0.14 TCGA-CG-5721-01 11 74911354 74911354 T C SLCO2B1 Missense_Mutation p.V562A 0.20 deleterious(0.01) benign(0.109) TCGA-CG-5721-01 11 75283141 75283141 C T SERPINH1 3'UTR 0.14 TCGA-CG-5721-01 11 76730809 76730809 C T ACER3 Missense_Mutation p.P247S 0.26 tolerated(0.12) benign(0.437) TCGA-CG-5721-01 11 77320435 77320435 C T AQP11 3'UTR 0.17 TCGA-CG-5721-01 11 77884849 77884849 T C KCTD21 Missense_Mutation p.N251S 0.22 tolerated(1) benign(0.023) TCGA-CG-5721-01 11 77907363 77907363 C T USP35 Silent p.R24R 0.23 TCGA-CG-5721-01 11 78369544 78369544 T C TENM4 Silent p.G2623G 0.18 TCGA-CG-5721-01 11 78383286 78383286 C T TENM4 Missense_Mutation p.R1862Q 0.24 deleterious(0.04) benign(0.388) TCGA-CG-5721-01 11 8060343 8060343 A G TUB 5'UTR 0.16 TCGA-CG-5721-01 11 8117104 8117104 A T TUB Missense_Mutation p.I208F 0.13 tolerated(0.1) probably_damaging(0.997) TCGA-CG-5721-01 11 8132264 8132264 T C RIC3 Missense_Mutation p.N364S 0.18 tolerated_low_confidence(0.18) benign(0.019) TCGA-CG-5721-01 11 82877219 82877219 A - PCF11 Frame_Shift_Del p.K429Rfs*7 0.29 TCGA-CG-5721-01 11 83641391 83641391 T C DLG2 Silent p.L492L 0.10 TCGA-CG-5721-01 11 837482 837482 A G CD151 Missense_Mutation p.N160S 0.21 tolerated(1) benign(0.001) TCGA-CG-5721-01 11 83810087 83810087 T A DLG2 Missense_Mutation p.N210Y 0.30 deleterious(0) probably_damaging(0.995) TCGA-CG-5721-01 11 84028016 84028016 C - DLG2 Intron 0.21 TCGA-CG-5721-01 11 84634221 84634221 A C DLG2 Intron 0.14 TCGA-CG-5721-01 11 86519334 86519334 A G PRSS23 Missense_Mutation p.M217V 0.16 tolerated(0.43) benign(0.076) TCGA-CG-5721-01 11 87029214 87029214 T C TMEM135 Silent p.V371V 0.20 TCGA-CG-5721-01 11 88337911 88337911 C T GRM5 Missense_Mutation p.D457N 0.21 deleterious(0.04) probably_damaging(0.998) TCGA-CG-5721-01 11 89224368 89224368 T C NOX4 Missense_Mutation p.H16R 0.21 deleterious(0.02) possibly_damaging(0.737) TCGA-CG-5721-01 11 89880585 89880585 A G NAALAD2 Silent p.G94G 0.05 TCGA-CG-5721-01 11 89947184 89947184 A G CHORDC1 Splice_Site p.X110_splice 0.19 TCGA-CG-5721-01 11 92088049 92088049 T - FAT3 Frame_Shift_Del p.L926* 0.20 TCGA-CG-5721-01 11 92495039 92495039 T C FAT3 Silent p.G1229G 0.18 TCGA-CG-5721-01 11 92531033 92531033 G A FAT3 Silent p.P1618P 0.21 TCGA-CG-5721-01 11 92532943 92532943 A G FAT3 Missense_Mutation p.K2255R 0.17 benign(0.023) TCGA-CG-5721-01 11 92533399 92533399 C - FAT3 Frame_Shift_Del p.R2409Gfs*5 0.22 TCGA-CG-5721-01 11 92538325 92538325 A G FAT3 Missense_Mutation p.N2968S 0.13 possibly_damaging(0.734) TCGA-CG-5721-01 11 92715504 92715504 A G MTNR1B 3'UTR 0.12 TCGA-CG-5721-01 11 92901114 92901114 A G SLC36A4 Missense_Mutation p.V255A 0.16 tolerated(0.31) benign(0.043) TCGA-CG-5721-01 11 94862578 94862578 C T ENDOD1 Silent p.G446G 0.18 TCGA-CG-5721-01 11 94911072 94911072 T C SESN3 Missense_Mutation p.D353G 0.16 deleterious(0) possibly_damaging(0.73) TCGA-CG-5721-01 11 95562484 95562484 T A CEP57 Missense_Mutation p.Y421N 0.19 deleterious(0.01) possibly_damaging(0.762) TCGA-CG-5721-01 11 95712489 95712489 T C MAML2 Missense_Mutation p.M1032V 0.16 unknown(0) TCGA-CG-5721-01 11 95826382 95826382 C G MAML2 Missense_Mutation p.E271D 0.21 benign(0.358) TCGA-CG-5721-01 11 9803113 9803113 T C SBF2 Missense_Mutation p.I1798V 0.19 tolerated(0.23) benign(0.003) TCGA-CG-5721-01 11 9853940 9853940 T C SBF2 Silent p.Q1161Q 0.25 TCGA-CG-5721-01 12 100042499 100042499 A G FAM71C Missense_Mutation p.T183A 0.26 deleterious(0.02) possibly_damaging(0.803) TCGA-CG-5721-01 12 1005855 1005855 G A WNK1 Missense_Mutation p.E2068K 0.13 deleterious(0) probably_damaging(0.998) TCGA-CG-5721-01 12 100930827 100930827 T C NR1H4 Splice_Site p.X321_splice 0.16 TCGA-CG-5721-01 12 101295506 101295506 T A ANO4 5'UTR 0.16 TCGA-CG-5721-01 12 101336279 101336279 A G ANO4 Missense_Mutation p.N106S 0.19 tolerated(0.07) probably_damaging(0.999) TCGA-CG-5721-01 12 101381332 101381332 A G ANO4 Missense_Mutation p.I171M 0.21 tolerated(0.3) benign(0.025) TCGA-CG-5721-01 12 10194128 10194128 T A CLEC9A 5'UTR 0.23 TCGA-CG-5721-01 12 102158613 102158613 T C GNPTAB Silent p.K694K 0.19 TCGA-CG-5721-01 12 1023614 1023614 A G RAD52 Missense_Mutation p.V317A 0.18 tolerated(0.75) benign(0.003) TCGA-CG-5721-01 12 103306669 103306669 C A PAH Missense_Mutation p.S23I 0.18 tolerated(0.06) benign(0.019) TCGA-CG-5721-01 12 1034619 1034619 G A RAD52 Silent p.R180R 0.19 TCGA-CG-5721-01 12 104067847 104067847 A G STAB2 Missense_Mutation p.Y845C 0.17 deleterious(0.04) possibly_damaging(0.786) TCGA-CG-5721-01 12 104340627 104340627 C T HSP90B1 Missense_Mutation p.R724W 0.14 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 12 104388210 104388210 A G GLT8D2 Missense_Mutation p.C224R 0.13 deleterious(0) probably_damaging(0.931) TCGA-CG-5721-01 12 105622983 105622983 C T APPL2 Missense_Mutation p.V25M 0.20 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 12 10586526 10586526 T C KLRC2 Missense_Mutation p.H116R 0.16 tolerated(0.37) benign(0.012) TCGA-CG-5721-01 12 106460490 106460490 C T NUAK1 3'UTR 0.22 TCGA-CG-5721-01 12 106633587 106633587 C T CKAP4 Missense_Mutation p.A342T 0.21 deleterious(0.01) possibly_damaging(0.904) TCGA-CG-5721-01 12 106773822 106773822 A - POLR3B Frame_Shift_Del p.S212Afs*7 0.25 TCGA-CG-5721-01 12 107208622 107208622 G A RIC8B Missense_Mutation p.R94Q 0.22 tolerated(0.13) possibly_damaging(0.673) TCGA-CG-5721-01 12 107386601 107386601 A G CRY1 Silent p.S575S 0.19 TCGA-CG-5721-01 12 10854626 10854626 T C YBX3 Missense_Mutation p.Y329C 0.20 deleterious(0.01) probably_damaging(0.935) TCGA-CG-5721-01 12 108941702 108941702 C T SART3 Missense_Mutation p.V169M 0.15 deleterious(0) probably_damaging(0.965) TCGA-CG-5721-01 12 109520724 109520724 A G USP30 Missense_Mutation p.H342R 0.18 tolerated(0.05) probably_damaging(0.948) TCGA-CG-5721-01 12 109685423 109685423 C A ACACB Missense_Mutation p.L1862M 0.14 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 12 109898554 109898554 G C KCTD10 Missense_Mutation p.R92G 0.13 deleterious(0) probably_damaging(0.966) TCGA-CG-5721-01 12 109907347 109907348 - C KCTD10 Frame_Shift_Ins p.R64Afs*9 0.22 TCGA-CG-5721-01 12 110226519 110226519 G A TRPV4 Silent p.L632L 0.18 TCGA-CG-5721-01 12 110503729 110503729 T C C12orf76 5'UTR 0.17 TCGA-CG-5721-01 12 110989605 110989605 A G PPTC7 Missense_Mutation p.V131A 0.20 tolerated(0.76) benign(0.004) TCGA-CG-5721-01 12 111057695 111057695 G A TCTN1 Missense_Mutation p.C92Y 0.05 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 12 111317711 111317711 T C CCDC63 Missense_Mutation p.V164A 0.24 tolerated(0.06) probably_damaging(0.947) TCGA-CG-5721-01 12 111356998 111356998 C A MYL2 Splice_Site p.X2_splice 0.19 TCGA-CG-5721-01 12 112193508 112193508 G A ACAD10 Missense_Mutation p.A1031T 0.23 deleterious(0.04) probably_damaging(0.977) TCGA-CG-5721-01 12 112305379 112305379 C T MAPKAPK5 Missense_Mutation p.R64C 0.16 deleterious(0.01) possibly_damaging(0.744) TCGA-CG-5721-01 12 112460247 112460247 G A ERP29 Missense_Mutation p.E193K 0.18 deleterious(0.02) benign(0.016) TCGA-CG-5721-01 12 112525484 112525484 T C NAA25 Intron 0.19 TCGA-CG-5721-01 12 113306354 113306354 A G RPH3A Silent p.E188E 0.18 TCGA-CG-5721-01 12 113354471 113354471 A G OAS1 Missense_Mutation p.Y271C 0.13 deleterious(0) probably_damaging(0.994) TCGA-CG-5721-01 12 113532900 113532900 T C DTX1 Silent p.G480G 0.19 TCGA-CG-5721-01 12 113612693 113612693 T C DDX54 Missense_Mutation p.N308S 0.28 tolerated(1) benign(0.001) TCGA-CG-5721-01 12 113723763 113723763 A G TPCN1 Missense_Mutation p.N580S 0.12 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 12 11422608 11422608 C T PRB3 5'UTR 0.27 TCGA-CG-5721-01 12 114397151 114397151 G A RBM19 Missense_Mutation p.A146V 0.25 tolerated(1) benign(0.001) TCGA-CG-5721-01 12 114841604 114841604 C G TBX5 Missense_Mutation p.A34P 0.29 tolerated(0.09) benign(0.073) TCGA-CG-5721-01 12 115117308 115117308 A G TBX3 Splice_Site p.X288_splice 0.23 TCGA-CG-5721-01 12 116457117 116457117 A G MED13L Silent p.V307V 0.11 TCGA-CG-5721-01 12 117723943 117723943 C T NOS1 Missense_Mutation p.R419H 0.20 deleterious(0) probably_damaging(0.968) TCGA-CG-5721-01 12 118590074 118590074 T C TAOK3 Silent p.L831L 0.17 TCGA-CG-5721-01 12 120142198 120142198 G A CIT Silent p.N1758N 0.12 TCGA-CG-5721-01 12 120567101 120567101 C T GCN1L1 Silent p.R2623R 0.21 TCGA-CG-5721-01 12 120575062 120575062 A G GCN1L1 Missense_Mutation p.I2242T 0.18 benign(0.013) TCGA-CG-5721-01 12 120582814 120582814 C - GCN1L1 Frame_Shift_Del p.E1690Sfs*11 0.26 TCGA-CG-5721-01 12 120593173 120593173 C T GCN1L1 Missense_Mutation p.V1168M 0.17 possibly_damaging(0.626) TCGA-CG-5721-01 12 120635190 120635190 T C RPLP0 Missense_Mutation p.N243D 0.23 tolerated(0.05) benign(0.111) TCGA-CG-5721-01 12 121858092 121858092 C T RNF34 Silent p.D228D 0.30 TCGA-CG-5721-01 12 12273985 12273985 C - LRP6 3'UTR 0.53 TCGA-CG-5721-01 12 122958303 122958303 G A ZCCHC8 Missense_Mutation p.A622V 0.06 tolerated(0.18) benign(0.011) TCGA-CG-5721-01 12 123005956 123005956 G A RSRC2 Silent p.H61H 0.20 TCGA-CG-5721-01 12 123060422 123060422 A G KNTC1 Silent p.V854V 0.19 TCGA-CG-5721-01 12 123099602 123099602 G A KNTC1 Missense_Mutation p.G1981E 0.19 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 12 123351987 123351987 G - VPS37B Frame_Shift_Del p.R179Gfs*41 0.27 TCGA-CG-5721-01 12 123806165 123806165 T C SBNO1 Missense_Mutation p.Y747C 0.20 tolerated(0.17) benign(0.153) TCGA-CG-5721-01 12 124102328 124102328 G A DDX55 Missense_Mutation p.R358H 0.20 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 12 124330240 124330240 G A DNAH10 Silent p.A1700A 0.26 TCGA-CG-5721-01 12 124352477 124352477 G A DNAH10 Missense_Mutation p.A2326T 0.24 benign(0.008) TCGA-CG-5721-01 12 125432358 125432358 G T DHX37 Missense_Mutation p.T1155N 0.23 tolerated_low_confidence(0.1) benign(0.054) TCGA-CG-5721-01 12 129278857 129278857 C T SLC15A4 Missense_Mutation p.A540T 0.21 deleterious(0) probably_damaging(0.927) TCGA-CG-5721-01 12 13065434 13065434 C T GPRC5A Silent p.S345S 0.20 TCGA-CG-5721-01 12 130941158 130941158 G A RIMBP2 Missense_Mutation p.H64Y 0.13 deleterious(0) benign(0.159) TCGA-CG-5721-01 12 131439178 131439178 G A GPR133 Missense_Mutation p.V26I 0.13 tolerated_low_confidence(0.25) benign(0.037) TCGA-CG-5721-01 12 13215855 13215855 C T KIAA1467 Silent p.D266D 0.21 TCGA-CG-5721-01 12 132512679 132512679 A G EP400 Missense_Mutation p.S1743G 0.22 unknown(0) TCGA-CG-5721-01 12 132561083 132561083 T C EP400 Missense_Mutation p.V3015A 0.10 probably_damaging(0.99) TCGA-CG-5721-01 12 133241979 133241979 G A POLE Missense_Mutation p.R793C 0.17 deleterious(0.01) probably_damaging(0.935) TCGA-CG-5721-01 12 133245254 133245254 G A POLE Missense_Mutation p.R665W 0.29 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 12 133256634 133256634 T C POLE Splice_Site p.X111_splice 0.17 TCGA-CG-5721-01 12 133310978 133310978 G T ANKLE2 Silent p.T628T 0.21 TCGA-CG-5721-01 12 133354367 133354367 C T GOLGA3 Missense_Mutation p.G1203R 0.32 deleterious(0.05) benign(0.401) TCGA-CG-5721-01 12 133448912 133448913 - C CHFR Frame_Shift_Ins p.D101Gfs*11 0.25 TCGA-CG-5721-01 12 133502068 133502068 C A ZNF605 Missense_Mutation p.R637M 0.18 tolerated(0.1) probably_damaging(0.984) TCGA-CG-5721-01 12 13716145 13716145 A G GRIN2B Missense_Mutation p.S1343P 0.19 tolerated(0.28) benign(0) TCGA-CG-5721-01 12 14613945 14613945 T C ATF7IP Missense_Mutation p.V892A 0.21 deleterious_low_confidence(0) unknown(0) TCGA-CG-5721-01 12 14827604 14827604 T C GUCY2C Missense_Mutation p.T347A 0.15 tolerated(0.72) benign(0.005) TCGA-CG-5721-01 12 14976450 14976450 T C C12orf60 Missense_Mutation p.V194A 0.09 tolerated(1) benign(0) TCGA-CG-5721-01 12 15090939 15090939 C T ERP27 Missense_Mutation p.A48T 0.23 tolerated(0.21) benign(0.079) TCGA-CG-5721-01 12 15264338 15264338 T C RERG Silent p.R44R 0.26 TCGA-CG-5721-01 12 15734725 15734725 G A PTPRO Missense_Mutation p.R1082Q 0.21 tolerated(0.27) benign(0.006) TCGA-CG-5721-01 12 18641389 18641389 A - PIK3C2G Frame_Shift_Del p.N798Mfs*16 0.18 TCGA-CG-5721-01 12 1882025 1882025 A G ADIPOR2 Silent p.E63E 0.18 TCGA-CG-5721-01 12 1889790 1889790 C T ADIPOR2 Missense_Mutation p.R213W 0.22 deleterious(0.05) benign(0.168) TCGA-CG-5721-01 12 1904931 1904931 C T CACNA2D4 Silent p.Q1043Q 0.18 TCGA-CG-5721-01 12 2055340 2055340 A G DCP1B 3'UTR 0.11 TCGA-CG-5721-01 12 20766423 20766423 C G PDE3A Missense_Mutation p.A353G 0.07 deleterious(0) probably_damaging(0.998) TCGA-CG-5721-01 12 20792787 20792787 A G PDE3A Missense_Mutation p.Y716C 0.22 deleterious(0) probably_damaging(0.997) TCGA-CG-5721-01 12 20799759 20799759 T A PDE3A Missense_Mutation p.Y814N 0.22 deleterious(0.01) probably_damaging(0.986) TCGA-CG-5721-01 12 21174422 21174422 T C SLCO1B7 Silent p.I82I 0.21 TCGA-CG-5721-01 12 21229407 21229407 A G SLCO1B7 Missense_Mutation p.Y543C 0.18 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 12 21375266 21375266 T C SLCO1B1 Missense_Mutation p.L572P 0.20 deleterious(0) possibly_damaging(0.808) TCGA-CG-5721-01 12 21623156 21623156 G T RECQL Missense_Mutation p.A641D 0.13 tolerated_low_confidence(0.05) benign(0.193) TCGA-CG-5721-01 12 21919133 21919133 T C KCNJ8 Missense_Mutation p.I267V 0.24 tolerated(0.16) probably_damaging(0.942) TCGA-CG-5721-01 12 21970154 21970154 T C ABCC9 Missense_Mutation p.T1287A 0.17 tolerated(0.21) benign(0.039) TCGA-CG-5721-01 12 22061055 22061055 A G ABCC9 Missense_Mutation p.Y471H 0.21 deleterious(0) probably_damaging(0.917) TCGA-CG-5721-01 12 23716308 23716308 T C SOX5 Missense_Mutation p.K458E 0.12 deleterious(0.01) probably_damaging(0.991) TCGA-CG-5721-01 12 23893942 23893942 C T SOX5 Silent p.R200R 0.21 TCGA-CG-5721-01 12 25002718 25002718 A G BCAT1 Splice_Site p.X237_splice 0.15 TCGA-CG-5721-01 12 26714699 26714699 A G ITPR2 Missense_Mutation p.L1606S 0.07 deleterious(0) possibly_damaging(0.764) TCGA-CG-5721-01 12 2676928 2676928 C T CACNA1C Silent p.C621C 0.28 TCGA-CG-5721-01 12 27107161 27107161 G A FGFR1OP2 Missense_Mutation p.D24N 0.19 tolerated(1) benign(0.001) TCGA-CG-5721-01 12 2716226 2716226 T C CACNA1C Missense_Mutation p.F1116L 0.21 tolerated(0.07) possibly_damaging(0.452) TCGA-CG-5721-01 12 27475266 27475266 A G STK38L Missense_Mutation p.N425D 0.20 tolerated(0.38) benign(0.005) TCGA-CG-5721-01 12 27788110 27788110 A G PPFIBP1 Intron 0.20 TCGA-CG-5721-01 12 2909724 2909724 C T FKBP4 Missense_Mutation p.A338V 0.17 tolerated(0.21) benign(0.093) TCGA-CG-5721-01 12 2926419 2926419 G A ITFG2 Missense_Mutation p.G43R 0.17 deleterious(0) probably_damaging(0.992) TCGA-CG-5721-01 12 29485561 29485561 A G FAR2 Missense_Mutation p.N429S 0.15 deleterious(0.05) probably_damaging(0.998) TCGA-CG-5721-01 12 29524548 29524548 T C ERGIC2 Missense_Mutation p.K7E 0.07 tolerated(0.06) benign(0.007) TCGA-CG-5721-01 12 2983279 2983279 C T FOXM1 Silent p.R122R 0.18 TCGA-CG-5721-01 12 30814171 30814171 A G IPO8 Silent p.S595S 0.21 TCGA-CG-5721-01 12 30815390 30815390 A G IPO8 Silent p.P542P 0.14 TCGA-CG-5721-01 12 30873765 30873765 T A CAPRIN2 Missense_Mutation p.M710L 0.17 tolerated(1) benign(0.007) TCGA-CG-5721-01 12 3129841 3129841 C T TEAD4 Missense_Mutation p.P209S 0.29 tolerated(0.51) benign(0.01) TCGA-CG-5721-01 12 3129842 3129842 C T TEAD4 Missense_Mutation p.P209L 0.15 tolerated(0.24) benign(0.091) TCGA-CG-5721-01 12 31545266 31545266 A G DENND5B Missense_Mutation p.V1134A 0.19 tolerated(0.38) benign(0.052) TCGA-CG-5721-01 12 32754251 32754251 T C FGD4 Missense_Mutation p.S244P 0.24 deleterious(0.02) probably_damaging(0.974) TCGA-CG-5721-01 12 3649830 3649830 G A PRMT8 Missense_Mutation p.C45Y 0.21 deleterious_low_confidence(0.01) benign(0.087) TCGA-CG-5721-01 12 39703510 39703510 A G KIF21A Silent p.G1385G 0.18 TCGA-CG-5721-01 12 40013362 40013362 G T ABCD2 Missense_Mutation p.A19D 0.20 deleterious_low_confidence(0.03) benign(0.194) TCGA-CG-5721-01 12 40040225 40040225 T C C12orf40 Silent p.C99C 0.14 TCGA-CG-5721-01 12 40223949 40223949 A G SLC2A13 Silent p.C467C 0.25 TCGA-CG-5721-01 12 416989 416989 G A KDM5A Silent p.S1187S 0.15 TCGA-CG-5721-01 12 41967558 41967558 A - PDZRN4 Frame_Shift_Del p.K994Rfs*2 0.23 TCGA-CG-5721-01 12 42729685 42729685 T C PPHLN1 Intron 0.08 TCGA-CG-5721-01 12 42853620 42853620 A G PRICKLE1 Silent p.I829I 0.15 TCGA-CG-5721-01 12 42853889 42853889 C T PRICKLE1 Missense_Mutation p.D740N 0.17 deleterious(0.04) benign(0.017) TCGA-CG-5721-01 12 42858973 42858974 AA - PRICKLE1 Frame_Shift_Del p.L288Vfs*22 0.18 TCGA-CG-5721-01 12 44136258 44136258 A G PUS7L Splice_Site p.X454_splice 0.17 TCGA-CG-5721-01 12 44782204 44782204 A G TMEM117 Missense_Mutation p.T432A 0.14 tolerated(0.61) probably_damaging(0.98) TCGA-CG-5721-01 12 45170874 45170874 A G NELL2 Missense_Mutation p.V288A 0.20 tolerated(0.07) benign(0.338) TCGA-CG-5721-01 12 45771863 45771863 A G ANO6 Missense_Mutation p.T399A 0.19 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 12 46316821 46316821 C T SCAF11 Silent p.S1341S 0.24 TCGA-CG-5721-01 12 46322023 46322023 A G SCAF11 Silent p.G487G 0.18 TCGA-CG-5721-01 12 46756417 46756417 C T SLC38A2 Missense_Mutation p.R395Q 0.21 deleterious(0) probably_damaging(0.997) TCGA-CG-5721-01 12 46758170 46758170 A T SLC38A2 Splice_Site p.X291_splice 0.07 TCGA-CG-5721-01 12 46758283 46758283 G A SLC38A2 Silent p.N254N 0.22 TCGA-CG-5721-01 12 4737718 4737718 T C AKAP3 Missense_Mutation p.N117S 0.19 tolerated(0.44) benign(0.188) TCGA-CG-5721-01 12 47471555 47471555 C T AMIGO2 Missense_Mutation p.V411I 0.21 tolerated(0.58) benign(0.006) TCGA-CG-5721-01 12 47629856 47629856 C T PCED1B Missense_Mutation p.P337L 0.19 tolerated(0.14) possibly_damaging(0.544) TCGA-CG-5721-01 12 4870167 4870167 G A GALNT8 Missense_Mutation p.R406Q 0.22 deleterious(0.04) possibly_damaging(0.758) TCGA-CG-5721-01 12 49297927 49297927 A G CCDC65 5'Flank 0.12 TCGA-CG-5721-01 12 49399287 49399287 G A PRKAG1 Nonsense_Mutation p.R70* 0.24 TCGA-CG-5721-01 12 49399309 49399309 A - PRKAG1 Frame_Shift_Del p.F62Lfs*4 0.18 TCGA-CG-5721-01 12 49434235 49434235 C T KMT2D Missense_Mutation p.V2440I 0.12 probably_damaging(0.987) TCGA-CG-5721-01 12 49434492 49434492 G - KMT2D Frame_Shift_Del p.P2354Lfs*30 0.30 TCGA-CG-5721-01 12 49434729 49434729 G A KMT2D Missense_Mutation p.P2275L 0.19 probably_damaging(0.94) TCGA-CG-5721-01 12 49499707 49499707 G A LMBR1L Missense_Mutation p.A64V 0.18 deleterious(0.02) benign(0.009) TCGA-CG-5721-01 12 49689976 49689976 G A PRPH Silent p.T187T 0.17 TCGA-CG-5721-01 12 49854672 49854672 T C SPATS2 5'UTR 0.25 TCGA-CG-5721-01 12 49999368 49999368 T C FAM186B 5'UTR 0.33 TCGA-CG-5721-01 12 50196941 50196941 T G NCKAP5L Missense_Mutation p.N44T 0.17 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 12 5020786 5020786 T C KCNA1 Missense_Mutation p.F81S 0.23 deleterious(0.01) probably_damaging(1) TCGA-CG-5721-01 12 5022089 5022089 A G KCNA1 3'UTR 0.27 TCGA-CG-5721-01 12 50232114 50232114 A G BCDIN3D 3'UTR 0.20 TCGA-CG-5721-01 12 50500173 50500173 G A GPD1 Missense_Mutation p.E155K 0.18 deleterious(0.03) possibly_damaging(0.856) TCGA-CG-5721-01 12 50847269 50847269 T C LARP4 Silent p.F277F 0.25 TCGA-CG-5721-01 12 51034587 51034587 T C DIP2B Missense_Mutation p.Y85H 0.26 tolerated(0.54) benign(0.003) TCGA-CG-5721-01 12 51449688 51449688 A G LETMD1 Missense_Mutation p.I195V 0.18 tolerated(0.45) benign(0.008) TCGA-CG-5721-01 12 51458364 51458364 C T CSRNP2 Missense_Mutation p.R266Q 0.17 tolerated(0.18) probably_damaging(0.99) TCGA-CG-5721-01 12 5153912 5153912 T C KCNA5 Missense_Mutation p.I200T 0.12 deleterious(0) probably_damaging(0.991) TCGA-CG-5721-01 12 51590631 51590631 G A POU6F1 5'UTR 0.13 TCGA-CG-5721-01 12 51882561 51882561 C A SLC4A8 Missense_Mutation p.P789T 0.25 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 12 52156379 52156379 C T SCN8A Silent p.D821D 0.26 TCGA-CG-5721-01 12 52159907 52159907 A G SCN8A Intron 0.18 TCGA-CG-5721-01 12 52566892 52566892 C T KRT80 Missense_Mutation p.R296H 0.19 deleterious(0) probably_damaging(0.976) TCGA-CG-5721-01 12 52714818 52714818 T C KRT83 Missense_Mutation p.D101G 0.18 deleterious(0.03) benign(0.32) TCGA-CG-5721-01 12 52800051 52800051 T A KRT82 Missense_Mutation p.H4L 0.15 tolerated(0.13) benign(0) TCGA-CG-5721-01 12 52881872 52881872 G A KRT6A Silent p.G480G 0.22 TCGA-CG-5721-01 12 53069123 53069123 C T KRT1 Missense_Mutation p.G597S 0.27 tolerated_low_confidence(0.52) unknown(0) TCGA-CG-5721-01 12 53449467 53449467 A G TENC1 Missense_Mutation p.Y240C 0.16 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 12 53456009 53456009 G A TENC1 Missense_Mutation p.C1226Y 0.20 deleterious(0) benign(0.253) TCGA-CG-5721-01 12 53671610 53671610 T C ESPL1 Missense_Mutation p.S744P 0.18 deleterious(0.01) probably_damaging(0.969) TCGA-CG-5721-01 12 53677233 53677233 C T ESPL1 Silent p.C996C 0.20 TCGA-CG-5721-01 12 53696953 53696953 C T C12orf10 Silent p.S155S 0.20 TCGA-CG-5721-01 12 54403221 54403221 C T HOXC8 Silent p.H51H 0.24 TCGA-CG-5721-01 12 54799103 54799103 G A ITGA5 Missense_Mutation p.R358W 0.20 deleterious(0) probably_damaging(0.937) TCGA-CG-5721-01 12 55356581 55356581 T C TESPA1 Silent p.E367E 0.21 TCGA-CG-5721-01 12 56115741 56115741 A G RP11-644F5.10 3'UTR 0.12 TCGA-CG-5721-01 12 56221972 56221972 A G DNAJC14 Silent p.C157C 0.22 TCGA-CG-5721-01 12 56428913 56428913 T C IKZF4 Missense_Mutation p.V519A 0.22 deleterious(0) probably_damaging(0.997) TCGA-CG-5721-01 12 56481863 56481863 T C ERBB3 Missense_Mutation p.V264A 0.16 deleterious(0) probably_damaging(0.926) TCGA-CG-5721-01 12 56505008 56505008 C A PA2G4 Missense_Mutation p.P327H 0.19 deleterious(0.01) benign(0.399) TCGA-CG-5721-01 12 56515016 56515016 T C ZC3H10 Missense_Mutation p.S224P 0.20 tolerated(0.32) benign(0.019) TCGA-CG-5721-01 12 56565655 56565655 C T SMARCC2 Missense_Mutation p.E634K 0.22 deleterious(0) possibly_damaging(0.635) TCGA-CG-5721-01 12 56581046 56581046 C T SMARCC2 Silent p.L52L 0.14 TCGA-CG-5721-01 12 56583145 56583145 T C SMARCC2 Missense_Mutation p.N34S 0.11 tolerated(0.06) benign(0) TCGA-CG-5721-01 12 56628733 56628733 C T SLC39A5 Silent p.G199G 0.22 TCGA-CG-5721-01 12 56713165 56713165 C T PAN2 Missense_Mutation p.R1070H 0.20 deleterious(0) probably_damaging(0.998) TCGA-CG-5721-01 12 56717655 56717655 C T PAN2 Missense_Mutation p.R707Q 0.16 tolerated(0.21) benign(0.254) TCGA-CG-5721-01 12 57005600 57005600 G A BAZ2A Silent p.D524D 0.33 TCGA-CG-5721-01 12 57110704 57110704 T - NACA Intron 0.19 TCGA-CG-5721-01 12 57111810 57111810 T A NACA Intron 0.10 TCGA-CG-5721-01 12 57135217 57135217 A G PRIM1 Splice_Site p.X328_splice 0.22 TCGA-CG-5721-01 12 57389660 57389660 A G GPR182 Missense_Mutation p.T223A 0.20 tolerated(0.51) benign(0.217) TCGA-CG-5721-01 12 57397714 57397714 A G ZBTB39 Silent p.L330L 0.17 TCGA-CG-5721-01 12 57499295 57499295 C T STAT6 Silent p.S256S 0.27 TCGA-CG-5721-01 12 57532311 57532311 G A LRP1 Missense_Mutation p.R46Q 0.25 probably_damaging(0.971) TCGA-CG-5721-01 12 57556256 57556256 C - LRP1 Frame_Shift_Del p.I789Sfs*21 0.23 TCGA-CG-5721-01 12 57572242 57572242 G - LRP1 Frame_Shift_Del p.E1490Rfs*80 0.26 TCGA-CG-5721-01 12 57843705 57843705 C T INHBC Missense_Mutation p.T320M 0.23 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 12 57910686 57910686 T C DDIT3 Missense_Mutation p.E162G 0.24 deleterious(0) possibly_damaging(0.676) TCGA-CG-5721-01 12 57911081 57911081 T C DDIT3 Missense_Mutation p.T60A 0.10 tolerated(0.52) benign(0.004) TCGA-CG-5721-01 12 57963058 57963058 G A KIF5A Missense_Mutation p.R280H 0.14 deleterious(0) probably_damaging(0.997) TCGA-CG-5721-01 12 58124631 58124631 C T AGAP2 Missense_Mutation p.A751T 0.16 tolerated(0.16) benign(0.406) TCGA-CG-5721-01 12 58193644 58193644 A G AVIL Silent p.P760P 0.20 TCGA-CG-5721-01 12 58350647 58350647 C T XRCC6BP1 Missense_Mutation p.R239C 0.22 tolerated_low_confidence(0.05) probably_damaging(1) TCGA-CG-5721-01 12 62777633 62777633 C T USP15 Missense_Mutation p.R368C 0.19 deleterious(0) possibly_damaging(0.901) TCGA-CG-5721-01 12 62949836 62949836 T C MON2 Silent p.I1091I 0.14 TCGA-CG-5721-01 12 62986566 62986566 A - MON2 3'UTR 0.22 TCGA-CG-5721-01 12 63544060 63544060 T C AVPR1A Missense_Mutation p.Y186C 0.18 deleterious(0.04) benign(0.033) TCGA-CG-5721-01 12 64061918 64061918 G A DPY19L2 Missense_Mutation p.R86C 0.15 tolerated_low_confidence(0.05) benign(0.443) TCGA-CG-5721-01 12 6559390 6559390 G A CD27 Missense_Mutation p.R107H 0.23 deleterious(0.01) benign(0.243) TCGA-CG-5721-01 12 6559772 6559772 C T CD27 Missense_Mutation p.R172W 0.19 deleterious(0.01) benign(0.394) TCGA-CG-5721-01 12 66704385 66704385 T C HELB Silent p.C559C 0.16 TCGA-CG-5721-01 12 667191 667191 C T B4GALNT3 Silent p.Y848Y 0.12 TCGA-CG-5721-01 12 67691600 67691600 A G CAND1 Missense_Mutation p.Y274C 0.23 tolerated(0.14) benign(0.005) TCGA-CG-5721-01 12 67692747 67692747 A G CAND1 Missense_Mutation p.Y291C 0.19 tolerated(0.17) benign(0.26) TCGA-CG-5721-01 12 67706721 67706721 T - CAND1 3'UTR 0.22 TCGA-CG-5721-01 12 6778267 6778267 T C ZNF384 Missense_Mutation p.H421R 0.24 deleterious(0) probably_damaging(0.992) TCGA-CG-5721-01 12 68051408 68051408 G A DYRK2 Missense_Mutation p.D241N 0.17 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 12 68052075 68052075 G A DYRK2 Missense_Mutation p.R463H 0.20 deleterious(0.01) possibly_damaging(0.652) TCGA-CG-5721-01 12 68619014 68619014 A G IL26 Missense_Mutation p.V93A 0.21 deleterious(0) possibly_damaging(0.681) TCGA-CG-5721-01 12 68720795 68720795 G A MDM1 Missense_Mutation p.T47M 0.25 deleterious(0) possibly_damaging(0.9) TCGA-CG-5721-01 12 69233299 69233299 T C MDM2 Silent p.I388I 0.18 TCGA-CG-5721-01 12 6981956 6981956 G - SPSB2 Frame_Shift_Del p.P37Lfs*61 0.22 TCGA-CG-5721-01 12 7053291 7053291 T C C12orf57 Missense_Mutation p.S3P 0.14 deleterious_low_confidence(0.04) benign(0.192) TCGA-CG-5721-01 12 7066906 7066906 C T PTPN6 Silent p.T388T 0.14 TCGA-CG-5721-01 12 71056272 71056272 T C PTPRR Intron 0.12 TCGA-CG-5721-01 12 71976241 71976241 C T LGR5 Missense_Mutation p.R520C 0.19 tolerated(0.15) possibly_damaging(0.836) TCGA-CG-5721-01 12 72008422 72008422 T A ZFC3H1 Nonsense_Mutation p.K1807* 0.24 TCGA-CG-5721-01 12 75685541 75685541 A G CAPS2 Missense_Mutation p.V427A 0.17 tolerated(0.08) benign(0.049) TCGA-CG-5721-01 12 75892388 75892388 A G KRR1 3'UTR 0.36 TCGA-CG-5721-01 12 77440086 77440086 A G E2F7 Silent p.Y187Y 0.15 TCGA-CG-5721-01 12 77449892 77449892 G A E2F7 Nonsense_Mutation p.R38* 0.19 TCGA-CG-5721-01 12 7805264 7805264 G A APOBEC1 Missense_Mutation p.T71M 0.25 tolerated(0.22) possibly_damaging(0.87) TCGA-CG-5721-01 12 78562562 78562562 A G NAV3 Missense_Mutation p.T1633A 0.13 deleterious(0) possibly_damaging(0.628) TCGA-CG-5721-01 12 7869690 7869690 T - DPPA3 3'UTR 0.20 TCGA-CG-5721-01 12 80699432 80699432 T A OTOGL Missense_Mutation p.V1088E 0.13 tolerated(0.05) benign(0.436) TCGA-CG-5721-01 12 81112932 81112932 T C MYF5 3'UTR 0.10 TCGA-CG-5721-01 12 81239535 81239535 C T LIN7A Missense_Mutation p.D153N 0.11 deleterious(0) probably_damaging(0.945) TCGA-CG-5721-01 12 81688654 81688654 A G PPFIA2 Missense_Mutation p.V962A 0.14 deleterious(0.01) benign(0.299) TCGA-CG-5721-01 12 8196589 8196589 C T FOXJ2 Missense_Mutation p.R174W 0.18 deleterious(0) probably_damaging(0.991) TCGA-CG-5721-01 12 8291035 8291035 A T CLEC4A 3'UTR 0.33 TCGA-CG-5721-01 12 83290084 83290084 T C TMTC2 Missense_Mutation p.V381A 0.04 tolerated(0.51) benign(0) TCGA-CG-5721-01 12 85279318 85279318 T C SLC6A15 Missense_Mutation p.Y157C 0.15 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 12 85439837 85439837 A G LRRIQ1 Missense_Mutation p.K126E 0.20 tolerated(0.5) benign(0.006) TCGA-CG-5721-01 12 85677642 85677642 G T ALX1 Missense_Mutation p.E173D 0.15 deleterious(0) probably_damaging(0.953) TCGA-CG-5721-01 12 88436611 88436611 A G C12orf29 Missense_Mutation p.Y73C 0.10 tolerated(0.08) probably_damaging(1) TCGA-CG-5721-01 12 88939540 88939540 C A KITLG Missense_Mutation p.V40F 0.14 deleterious(0) probably_damaging(0.938) TCGA-CG-5721-01 12 9089487 9089487 T C PHC1 Missense_Mutation p.Y802H 0.26 deleterious(0) unknown(0) TCGA-CG-5721-01 12 9220622 9220622 C T A2M Intron 0.25 TCGA-CG-5721-01 12 94244136 94244136 A G CRADD 3'UTR 0.17 TCGA-CG-5721-01 12 94654559 94654559 C T PLXNC1 Silent p.S1131S 0.19 TCGA-CG-5721-01 12 95488366 95488366 A G FGD6 Splice_Site p.X1200_splice 0.26 TCGA-CG-5721-01 12 95546740 95546740 A G FGD6 Silent p.V872V 0.25 TCGA-CG-5721-01 12 95927368 95927368 G A USP44 Missense_Mutation p.S222L 0.22 tolerated(0.16) benign(0.01) TCGA-CG-5721-01 12 96263270 96263270 T C CCDC38 Silent p.Q522Q 0.18 TCGA-CG-5721-01 12 96407035 96407035 A G LTA4H Missense_Mutation p.V437A 0.17 tolerated(0.35) benign(0) TCGA-CG-5721-01 12 98849434 98849434 G A SLC9A7P1 RNA 0.19 TCGA-CG-5721-01 12 98989556 98989556 G A SLC25A3 Intron 0.19 TCGA-CG-5721-01 13 101077939 101077939 C T PCCA Missense_Mutation p.S600L 0.23 tolerated(0.27) benign(0) TCGA-CG-5721-01 13 101182503 101182503 A G PCCA 3'UTR 0.28 TCGA-CG-5721-01 13 101288800 101288800 G A TMTC4 Silent p.D396D 0.19 TCGA-CG-5721-01 13 101755586 101755586 T C NALCN Silent p.K998K 0.14 TCGA-CG-5721-01 13 103286306 103286306 C T TPP2 Silent p.D417D 0.15 TCGA-CG-5721-01 13 103421785 103421785 T A TEX30 Missense_Mutation p.D41V 0.18 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 13 103492141 103492141 A - BIVM-ERCC5 Frame_Shift_Del p.K453Rfs*9 0.21 TCGA-CG-5721-01 13 103514541 103514541 A G BIVM-ERCC5 Missense_Mutation p.M774V 0.17 tolerated_low_confidence(0.16) benign(0.004) TCGA-CG-5721-01 13 111082993 111082993 G A COL4A2 Intron 0.24 TCGA-CG-5721-01 13 111156324 111156324 C - COL4A2 Frame_Shift_Del p.G1426Efs*33 0.19 TCGA-CG-5721-01 13 113159011 113159011 G A TUBGCP3 Missense_Mutation p.H702Y 0.24 deleterious(0) benign(0.345) TCGA-CG-5721-01 13 113470490 113470490 A G ATP11A Missense_Mutation p.T179A 0.18 deleterious(0) probably_damaging(0.968) TCGA-CG-5721-01 13 113718664 113718664 A G MCF2L Missense_Mutation p.K179R 0.18 tolerated(0.31) benign(0.017) TCGA-CG-5721-01 13 113739245 113739245 A C MCF2L Missense_Mutation p.K701Q 0.15 deleterious(0) probably_damaging(0.973) TCGA-CG-5721-01 13 114083383 114083383 G C ADPRHL1 Missense_Mutation p.A177G 0.22 deleterious(0) probably_damaging(0.99) TCGA-CG-5721-01 13 114287550 114287550 C T TFDP1 Silent p.L142L 0.28 TCGA-CG-5721-01 13 114469097 114469097 C T TMEM255B Missense_Mutation p.S19L 0.18 tolerated(0.26) benign(0.019) TCGA-CG-5721-01 13 114523949 114523949 C T GAS6 Missense_Mutation p.G642D 0.19 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 13 115022679 115022679 C T CDC16 Silent p.V408V 0.23 TCGA-CG-5721-01 13 115037962 115037962 T C CDC16 Intron 0.11 TCGA-CG-5721-01 13 115051798 115051798 T C UPF3A Missense_Mutation p.V148A 0.07 deleterious(0) possibly_damaging(0.855) TCGA-CG-5721-01 13 20056655 20056655 T C TPTE2 Missense_Mutation p.E51G 0.07 tolerated(0.14) benign(0.001) TCGA-CG-5721-01 13 20245347 20245347 A G MPHOSPH8 Missense_Mutation p.D820G 0.26 tolerated(0.06) benign(0.002) TCGA-CG-5721-01 13 20356666 20356666 A G PSPC1 Missense_Mutation p.Y78H 0.15 deleterious(0) benign(0.346) TCGA-CG-5721-01 13 20399238 20399239 - T ZMYM5 Frame_Shift_Ins p.E464Gfs*35 0.12 TCGA-CG-5721-01 13 20411658 20411658 A G ZMYM5 3'UTR 0.18 TCGA-CG-5721-01 13 21311923 21311923 T C N6AMT2 Missense_Mutation p.S56G 0.22 tolerated(0.08) possibly_damaging(0.527) TCGA-CG-5721-01 13 21437114 21437114 T - XPO4 Intron 0.23 TCGA-CG-5721-01 13 21562886 21562886 G A LATS2 Nonsense_Mutation p.Q345* 0.16 TCGA-CG-5721-01 13 21562970 21562970 G A LATS2 Missense_Mutation p.H317Y 0.36 tolerated_low_confidence(0.14) benign(0.255) TCGA-CG-5721-01 13 23932488 23932488 A G SACS Missense_Mutation p.V197A 0.16 probably_damaging(0.989) TCGA-CG-5721-01 13 25268672 25268672 C T ATP12A Missense_Mutation p.R496C 0.22 deleterious(0.02) benign(0.008) TCGA-CG-5721-01 13 25338390 25338390 C T RNF17 Nonsense_Mutation p.R17* 0.25 TCGA-CG-5721-01 13 25448299 25448299 A G RNF17 Missense_Mutation p.K1499E 0.13 deleterious(0.03) probably_damaging(0.973) TCGA-CG-5721-01 13 25905746 25905746 T C NUPL1 Intron 0.29 TCGA-CG-5721-01 13 26621066 26621066 T C SHISA2 Missense_Mutation p.N158S 0.12 tolerated(1) benign(0.003) TCGA-CG-5721-01 13 27332961 27332961 T C GPR12 Nonstop_Mutation p.*335Wext*21 0.19 TCGA-CG-5721-01 13 28014141 28014141 C A MTIF3 Missense_Mutation p.A149S 0.19 tolerated(0.09) benign(0.4) TCGA-CG-5721-01 13 28610120 28610120 T C FLT3 Missense_Mutation p.Y457C 0.23 deleterious(0.01) probably_damaging(0.984) TCGA-CG-5721-01 13 28611391 28611391 C A FLT3 Nonsense_Mutation p.G414* 0.19 TCGA-CG-5721-01 13 28841299 28841299 T C PAN3 Silent p.N547N 0.21 TCGA-CG-5721-01 13 28862168 28862168 T C PAN3 Missense_Mutation p.L811S 0.26 deleterious(0.01) probably_damaging(1) TCGA-CG-5721-01 13 28896941 28896941 A G FLT1 Missense_Mutation p.V980A 0.13 tolerated(0.97) benign(0.009) TCGA-CG-5721-01 13 29012359 29012359 T - FLT1 Frame_Shift_Del p.K171Sfs*7 0.18 TCGA-CG-5721-01 13 29287455 29287455 C T SLC46A3 Missense_Mutation p.C141Y 0.13 tolerated(0.16) benign(0.165) TCGA-CG-5721-01 13 31232624 31232624 A G USPL1 Missense_Mutation p.I804V 0.20 tolerated(0.5) benign(0.004) TCGA-CG-5721-01 13 31725327 31725327 A T HSPH1 Missense_Mutation p.V222E 0.10 deleterious(0) probably_damaging(0.95) TCGA-CG-5721-01 13 32376343 32376343 T A RXFP2 Missense_Mutation p.I689N 0.15 deleterious(0) probably_damaging(0.988) TCGA-CG-5721-01 13 32653054 32653054 C T FRY Silent p.L52L 0.19 TCGA-CG-5721-01 13 32913067 32913067 T C BRCA2 Silent p.H1525H 0.20 TCGA-CG-5721-01 13 32913920 32913920 G A BRCA2 Missense_Mutation p.V1810I 0.16 tolerated(0.11) benign(0.077) TCGA-CG-5721-01 13 32914557 32914557 C T BRCA2 Missense_Mutation p.S2022L 0.22 tolerated(0.13) possibly_damaging(0.447) TCGA-CG-5721-01 13 33701537 33701537 G A STARD13 Missense_Mutation p.S632F 0.13 deleterious(0) probably_damaging(0.933) TCGA-CG-5721-01 13 34410364 34410364 T C RFC3 Missense_Mutation p.F335L 0.19 deleterious(0) probably_damaging(0.973) TCGA-CG-5721-01 13 35632906 35632906 T C NBEA Missense_Mutation p.V382A 0.25 tolerated(0.13) probably_damaging(0.983) TCGA-CG-5721-01 13 35738555 35738555 A G NBEA Missense_Mutation p.N1381S 0.24 deleterious(0) possibly_damaging(0.816) TCGA-CG-5721-01 13 35782886 35782886 A G NBEA Missense_Mutation p.T1806A 0.19 tolerated(0.31) benign(0.004) TCGA-CG-5721-01 13 36878409 36878409 A G SPG20 3'UTR 0.19 TCGA-CG-5721-01 13 37014180 37014180 A G CCNA1 Missense_Mutation p.T320A 0.17 deleterious(0.03) benign(0.159) TCGA-CG-5721-01 13 37422679 37422679 A - SMAD9 3'UTR 0.19 TCGA-CG-5721-01 13 37422755 37422755 A G SMAD9 3'UTR 0.07 TCGA-CG-5721-01 13 37598550 37598550 C T SUPT20H Silent p.S453S 0.20 TCGA-CG-5721-01 13 39263610 39263610 G A FREM2 Missense_Mutation p.R710H 0.25 tolerated(0.3) benign(0.008) TCGA-CG-5721-01 13 39544433 39544433 A G STOML3 Silent p.D135D 0.18 TCGA-CG-5721-01 13 39546706 39546706 T C STOML3 Missense_Mutation p.I85M 0.19 tolerated(0.07) benign(0.02) TCGA-CG-5721-01 13 39611480 39611480 G A PROSER1 5'UTR 0.29 TCGA-CG-5721-01 13 41766825 41766825 A G KBTBD7 Silent p.D523D 0.22 TCGA-CG-5721-01 13 41767437 41767437 G A KBTBD7 Silent p.S319S 0.20 TCGA-CG-5721-01 13 42873774 42873774 T - AKAP11 Frame_Shift_Del p.S300Rfs*30 0.25 TCGA-CG-5721-01 13 44463029 44463029 A G LACC1 Silent p.E348E 0.19 TCGA-CG-5721-01 13 45768415 45768415 T C KCTD4 Silent p.G96G 0.23 TCGA-CG-5721-01 13 46541688 46541688 C G ZC3H13 Silent p.V1424V 0.15 TCGA-CG-5721-01 13 46544099 46544099 T C ZC3H13 Silent p.K860K 0.22 TCGA-CG-5721-01 13 48919305 48919305 T C RB1 Missense_Mutation p.V157A 0.19 deleterious(0) possibly_damaging(0.715) TCGA-CG-5721-01 13 49580394 49580394 C T FNDC3A Missense_Mutation p.A23V 0.22 tolerated(0.27) benign(0.093) TCGA-CG-5721-01 13 51826294 51826294 G A FAM124A Missense_Mutation p.R300H 0.16 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 13 52548584 52548584 T C ATP7B Missense_Mutation p.T258A 0.19 tolerated(0.09) benign(0.008) TCGA-CG-5721-01 13 52676262 52676262 A - NEK5 Frame_Shift_Del p.L259* 0.18 TCGA-CG-5721-01 13 52971767 52971767 T C THSD1 Silent p.A207A 0.07 TCGA-CG-5721-01 13 53035683 53035683 T C CKAP2 Missense_Mutation p.F242S 0.19 tolerated(0.46) benign(0.002) TCGA-CG-5721-01 13 58208421 58208421 C - PCDH17 Frame_Shift_Del p.P581Qfs*2 0.28 TCGA-CG-5721-01 13 58299162 58299162 T C PCDH17 Silent p.L1072L 0.20 TCGA-CG-5721-01 13 72053400 72053400 C T DACH1 Missense_Mutation p.V593I 0.14 benign(0.155) TCGA-CG-5721-01 13 73349347 73349347 A G DIS3 Splice_Site p.X329_splice 0.17 TCGA-CG-5721-01 13 73357645 73357645 A G PIBF1 Missense_Mutation p.N13S 0.07 deleterious_low_confidence(0.01) probably_damaging(0.99) TCGA-CG-5721-01 13 74289502 74289502 T C KLF12 Intron 0.17 TCGA-CG-5721-01 13 76100731 76100731 C T COMMD6 Silent p.T97T 0.20 TCGA-CG-5721-01 13 76407252 76407252 T C LMO7 Silent p.F772F 0.18 TCGA-CG-5721-01 13 77581883 77581883 T C FBXL3 Silent p.E228E 0.23 TCGA-CG-5721-01 13 77592813 77592813 T C FBXL3 Silent p.L131L 0.23 TCGA-CG-5721-01 13 78475265 78475265 A C EDNRB Nonsense_Mutation p.Y383* 0.22 TCGA-CG-5721-01 13 79175650 79175650 G A POU4F1 Missense_Mutation p.A387V 0.20 deleterious(0) unknown(0) TCGA-CG-5721-01 13 79177482 79177482 A G POU4F1 5'UTR 0.16 TCGA-CG-5721-01 13 84455509 84455509 T - SLITRK1 Frame_Shift_Del p.K45Rfs*64 0.20 TCGA-CG-5721-01 13 86368224 86368224 C T SLITRK6 Missense_Mutation p.R807H 0.15 tolerated(0.11) possibly_damaging(0.863) TCGA-CG-5721-01 13 88329969 88329969 T C SLITRK5 Missense_Mutation p.Y776H 0.27 deleterious(0.01) probably_damaging(0.984) TCGA-CG-5721-01 13 88330275 88330275 C T SLITRK5 Missense_Mutation p.P878S 0.22 tolerated(0.39) benign(0.219) TCGA-CG-5721-01 13 92051382 92051382 C T GPC5 Nonsense_Mutation p.Q28* 0.45 TCGA-CG-5721-01 13 94938708 94938708 A - GPC6 Frame_Shift_Del p.N329Tfs*60 0.24 TCGA-CG-5721-01 13 95131364 95131364 G A DCT Missense_Mutation p.A49V 0.30 deleterious(0.01) benign(0.15) TCGA-CG-5721-01 13 95230367 95230367 T C TGDS Silent p.V239V 0.13 TCGA-CG-5721-01 13 95243105 95243105 A G TGDS Splice_Site p.X105_splice 0.14 TCGA-CG-5721-01 13 95695936 95695936 C T ABCC4 Missense_Mutation p.M1245I 0.10 deleterious(0.01) benign(0.311) TCGA-CG-5721-01 13 96361576 96361576 T C DNAJC3 Missense_Mutation p.F60L 0.14 deleterious(0.04) benign(0.076) TCGA-CG-5721-01 13 99020379 99020379 C T FARP1 Missense_Mutation p.H110Y 0.17 deleterious(0) possibly_damaging(0.722) TCGA-CG-5721-01 13 99092982 99092982 G A FARP1 Silent p.S896S 0.17 TCGA-CG-5721-01 13 99337071 99337071 G A SLC15A1 Silent p.I678I 0.17 TCGA-CG-5721-01 14 100377888 100377888 A G EML1 Missense_Mutation p.N509S 0.21 tolerated(0.29) benign(0.019) TCGA-CG-5721-01 14 100995488 100995488 T C WDR25 Silent p.L452L 0.16 TCGA-CG-5721-01 14 101526089 101526089 C T MIR541 5'Flank 0.20 TCGA-CG-5721-01 14 102028188 102028188 C T DIO3 Missense_Mutation p.H119Y 0.20 tolerated(0.28) benign(0.001) TCGA-CG-5721-01 14 102442075 102442075 G A DYNC1H1 Missense_Mutation p.E95K 0.12 benign(0.002) TCGA-CG-5721-01 14 102494083 102494083 T C DYNC1H1 Missense_Mutation p.I3059T 0.14 benign(0.063) TCGA-CG-5721-01 14 102675555 102675555 T C WDR20 Missense_Mutation p.S381P 0.19 tolerated(0.09) possibly_damaging(0.806) TCGA-CG-5721-01 14 102695953 102695953 T C MOK Silent p.R341R 0.20 TCGA-CG-5721-01 14 103187412 103187412 A G RCOR1 Silent p.R374R 0.18 TCGA-CG-5721-01 14 103404718 103404718 G A CDC42BPB Missense_Mutation p.P1620S 0.18 tolerated(0.41) benign(0.001) TCGA-CG-5721-01 14 103566731 103566731 C T EXOC3L4 Missense_Mutation p.R59W 0.31 tolerated(0.14) benign(0.009) TCGA-CG-5721-01 14 103574751 103574751 T C EXOC3L4 Silent p.L625L 0.17 TCGA-CG-5721-01 14 103601877 103601877 T C TNFAIP2 3'UTR 0.28 TCGA-CG-5721-01 14 103969654 103969654 T C MARK3 3'UTR 0.25 TCGA-CG-5721-01 14 104194125 104194125 T C ZFYVE21 Missense_Mutation p.C78R 0.19 deleterious(0) probably_damaging(0.988) TCGA-CG-5721-01 14 104206432 104206432 G - PPP1R13B Frame_Shift_Del p.P774Lfs*97 0.23 TCGA-CG-5721-01 14 104457499 104457499 A G TDRD9 Missense_Mutation p.N373S 0.08 tolerated(0.77) benign(0.002) TCGA-CG-5721-01 14 105169688 105169688 C T INF2 Silent p.S188S 0.17 TCGA-CG-5721-01 14 105241992 105241992 G A AKT1 Silent p.R144R 0.25 TCGA-CG-5721-01 14 105360905 105360905 G A CEP170B Missense_Mutation p.R1466Q 0.15 deleterious(0.02) probably_damaging(0.944) TCGA-CG-5721-01 14 105404363 105404363 T - AHNAK2 3'UTR 0.24 TCGA-CG-5721-01 14 105408451 105408451 T A AHNAK2 Missense_Mutation p.E4446V 0.17 benign(0.171) TCGA-CG-5721-01 14 105409290 105409290 G A AHNAK2 Silent p.D4166D 0.21 TCGA-CG-5721-01 14 105409652 105409652 T C AHNAK2 Missense_Mutation p.S4046G 0.12 benign(0.001) TCGA-CG-5721-01 14 105409662 105409662 G C AHNAK2 Silent p.P4042P 0.14 TCGA-CG-5721-01 14 105412200 105412200 G - AHNAK2 Frame_Shift_Del p.S3197Lfs*13 0.19 TCGA-CG-5721-01 14 105413724 105413724 T C AHNAK2 Silent p.Q2688Q 0.15 TCGA-CG-5721-01 14 105414035 105414035 G - AHNAK2 Frame_Shift_Del p.Q2585Sfs*2 0.15 TCGA-CG-5721-01 14 105843171 105843171 T C PACS2 Missense_Mutation p.Y290H 0.18 deleterious(0.01) possibly_damaging(0.891) TCGA-CG-5721-01 14 105927257 105927257 T C MTA1 Silent p.Y303Y 0.18 TCGA-CG-5721-01 14 106236467 106236467 T A IGHG3 Silent p.T152T 0.17 TCGA-CG-5721-01 14 106236655 106236655 T A IGHG3 Silent p.T137T 0.08 TCGA-CG-5721-01 14 106552490 106552490 T C IGHV3-9 Missense_Mutation p.D50G 0.10 tolerated_low_confidence(0.1) benign(0.005) TCGA-CG-5721-01 14 106586402 106586402 C - IGHV3-13 Frame_Shift_Del p.G28Efs*10 0.29 TCGA-CG-5721-01 14 106725298 106725298 C A IGHV3-23 Missense_Mutation p.G85V 0.18 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-CG-5721-01 14 106780523 106780523 T C IGHV4-28 Missense_Mutation p.Y114C 0.22 deleterious(0.02) possibly_damaging(0.889) TCGA-CG-5721-01 14 106780591 106780591 T C IGHV4-28 Silent p.V91V 0.15 TCGA-CG-5721-01 14 107114031 107114031 C T IGHV3-64 Missense_Mutation p.V22M 0.12 deleterious_low_confidence(0.02) possibly_damaging(0.694) TCGA-CG-5721-01 14 20344705 20344705 T A OR4K2 Silent p.S93S 0.14 TCGA-CG-5721-01 14 20586234 20586234 A G OR4K17 Missense_Mutation p.I223M 0.17 deleterious(0.01) possibly_damaging(0.482) TCGA-CG-5721-01 14 20781885 20781885 A G CCNB1IP1 Missense_Mutation p.Y125H 0.25 tolerated(0.21) benign(0.228) TCGA-CG-5721-01 14 20813565 20813565 C T PARP2 Missense_Mutation p.A85V 0.15 tolerated(0.13) benign(0.004) TCGA-CG-5721-01 14 20923812 20923812 A G APEX1 Missense_Mutation p.K3R 0.12 deleterious(0.04) probably_damaging(0.985) TCGA-CG-5721-01 14 21025069 21025069 T C RNASE9 Missense_Mutation p.T59A 0.22 deleterious(0.02) possibly_damaging(0.641) TCGA-CG-5721-01 14 21109390 21109390 C - OR6S1 Frame_Shift_Del p.G154Dfs*62 0.28 TCGA-CG-5721-01 14 21460342 21460342 A G METTL17 Missense_Mutation p.T142A 0.22 tolerated(0.05) possibly_damaging(0.611) TCGA-CG-5721-01 14 21486152 21486152 C T NDRG2 Missense_Mutation p.G315S 0.22 deleterious(0.04) possibly_damaging(0.905) TCGA-CG-5721-01 14 21502245 21502245 C T RNASE13 Missense_Mutation p.C68Y 0.23 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 14 21771652 21771652 T C RPGRIP1 Silent p.N250N 0.08 TCGA-CG-5721-01 14 21831045 21831045 G A SUPT16H Missense_Mutation p.R525W 0.22 deleterious(0.04) possibly_damaging(0.786) TCGA-CG-5721-01 14 21852192 21852192 T C SUPT16H 5'UTR 0.19 TCGA-CG-5721-01 14 21870577 21870578 - TC CHD8 Frame_Shift_Ins p.M1267Rfs*20 0.21 TCGA-CG-5721-01 14 21955998 21955998 C A TOX4 Intron 0.38 TCGA-CG-5721-01 14 22314979 22314979 T C TRAV8-2 Silent p.I12I 0.22 TCGA-CG-5721-01 14 22789044 22789044 A G TRAV41 Missense_Mutation p.N86S 0.17 tolerated(0.55) possibly_damaging(0.866) TCGA-CG-5721-01 14 22987474 22987474 G A TRAJ26 Missense_Mutation p.V18M 0.19 unknown(0) TCGA-CG-5721-01 14 22991074 22991074 A G TRAJ22 Silent p.L20L 0.19 TCGA-CG-5721-01 14 23072501 23072501 C T ABHD4 Nonsense_Mutation p.R107* 0.19 TCGA-CG-5721-01 14 23519067 23519067 G A CDH24 Silent p.Y521Y 0.22 TCGA-CG-5721-01 14 23549358 23549358 G A ACIN1 Missense_Mutation p.P454S 0.15 probably_damaging(0.997) TCGA-CG-5721-01 14 23828545 23828545 T C EFS Missense_Mutation p.Y381C 0.17 deleterious(0.01) probably_damaging(1) TCGA-CG-5721-01 14 23885260 23885260 C T MYH7 Missense_Mutation p.A1636T 0.17 deleterious(0.02) probably_damaging(0.952) TCGA-CG-5721-01 14 23946446 23946446 G A NGDN Missense_Mutation p.V251I 0.28 tolerated(0.13) possibly_damaging(0.592) TCGA-CG-5721-01 14 24542843 24542843 C T CPNE6 Nonsense_Mutation p.R102* 0.16 TCGA-CG-5721-01 14 24588368 24588368 G A DCAF11 Missense_Mutation p.R265H 0.21 tolerated(0.07) benign(0.017) TCGA-CG-5721-01 14 24634066 24634066 T C IRF9 Missense_Mutation p.I298T 0.21 deleterious(0) possibly_damaging(0.886) TCGA-CG-5721-01 14 24707913 24707913 G T GMPR2 Nonsense_Mutation p.E344* 0.28 TCGA-CG-5721-01 14 24723893 24723893 G A TGM1 Missense_Mutation p.R689C 0.19 deleterious(0) probably_damaging(0.998) TCGA-CG-5721-01 14 24729846 24729847 - C TGM1 Frame_Shift_Ins p.S190Qfs*49 0.20 TCGA-CG-5721-01 14 24729876 24729876 C T TGM1 Silent p.T179T 0.22 TCGA-CG-5721-01 14 24773340 24773340 G A NOP9 Missense_Mutation p.V502I 0.12 tolerated(0.43) benign(0.028) TCGA-CG-5721-01 14 29237117 29237117 T C FOXG1 Missense_Mutation p.I211T 0.16 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 14 29237605 29237605 T C FOXG1 Missense_Mutation p.Y374H 0.12 deleterious(0) possibly_damaging(0.801) TCGA-CG-5721-01 14 30066890 30066890 G A PRKD1 Silent p.P747P 0.20 TCGA-CG-5721-01 14 31364949 31364949 T - STRN3 Frame_Shift_Del p.M715* 0.24 TCGA-CG-5721-01 14 31597063 31597063 T C HECTD1 Missense_Mutation p.T1637A 0.15 tolerated_low_confidence(0.71) possibly_damaging(0.899) TCGA-CG-5721-01 14 31597105 31597105 T C HECTD1 Missense_Mutation p.T1623A 0.17 tolerated(0.6) possibly_damaging(0.899) TCGA-CG-5721-01 14 31598572 31598572 T C HECTD1 Silent p.A1335A 0.22 TCGA-CG-5721-01 14 31605831 31605831 G A HECTD1 Missense_Mutation p.P1007L 0.22 deleterious(0.03) benign(0.096) TCGA-CG-5721-01 14 32562839 32562839 A G ARHGAP5 Silent p.P988P 0.12 TCGA-CG-5721-01 14 33005003 33005003 A G AKAP6 Missense_Mutation p.T190A 0.16 tolerated(0.05) benign(0.015) TCGA-CG-5721-01 14 33015103 33015103 T C AKAP6 Missense_Mutation p.V415A 0.18 tolerated(0.08) benign(0.002) TCGA-CG-5721-01 14 34243648 34243648 C - NPAS3 Frame_Shift_Del p.P321Lfs*17 0.20 TCGA-CG-5721-01 14 35577396 35577396 A G PPP2R3C Missense_Mutation p.S151P 0.20 tolerated(1) benign(0) TCGA-CG-5721-01 14 35739731 35739731 T - KIAA0391 Frame_Shift_Del p.F518Lfs*12 0.26 TCGA-CG-5721-01 14 36004894 36004894 T C INSM2 Missense_Mutation p.F479S 0.18 deleterious(0) probably_damaging(0.965) TCGA-CG-5721-01 14 39782647 39782647 T C CTAGE5 Splice_Site p.X437_splice 0.12 TCGA-CG-5721-01 14 45370048 45370048 A G C14orf28 Missense_Mutation p.D137G 0.19 deleterious_low_confidence(0.01) benign(0.328) TCGA-CG-5721-01 14 45542710 45542710 T C FAM179B Silent p.H1703H 0.05 TCGA-CG-5721-01 14 45590703 45590703 T C FKBP3 Missense_Mutation p.T147A 0.21 deleterious(0.04) benign(0.064) TCGA-CG-5721-01 14 45636264 45636264 A G FANCM Missense_Mutation p.N634D 0.20 deleterious(0.03) benign(0.009) TCGA-CG-5721-01 14 45645728 45645728 T C FANCM Silent p.D1257D 0.13 TCGA-CG-5721-01 14 45668046 45668046 A G FANCM Silent p.A1972A 0.19 TCGA-CG-5721-01 14 50195672 50195672 C T KLHDC1 Missense_Mutation p.A199V 0.16 deleterious(0.01) probably_damaging(0.996) TCGA-CG-5721-01 14 50246358 50246358 G A KLHDC2 Missense_Mutation p.G227R 0.25 deleterious(0) probably_damaging(0.923) TCGA-CG-5721-01 14 50788253 50788253 A G ATP5S Silent p.K31K 0.19 TCGA-CG-5721-01 14 52520419 52520419 G A NID2 Missense_Mutation p.P436L 0.19 tolerated(0.79) benign(0.003) TCGA-CG-5721-01 14 52735128 52735128 A G PTGDR Missense_Mutation p.Y199C 0.19 deleterious(0) probably_damaging(0.992) TCGA-CG-5721-01 14 52907343 52907344 - T TXNDC16 Frame_Shift_Ins p.A648Sfs*36 0.16 TCGA-CG-5721-01 14 53101670 53101670 A G GPR137C Missense_Mutation p.Q376R 0.13 tolerated(0.29) possibly_damaging(0.888) TCGA-CG-5721-01 14 53250196 53250196 A - GNPNAT1 Frame_Shift_Del p.F54Lfs*7 0.21 TCGA-CG-5721-01 14 53325164 53325164 T C FERMT2 Silent p.T665T 0.24 TCGA-CG-5721-01 14 54416799 54416799 A G BMP4 Missense_Mutation p.V393A 0.22 deleterious(0) probably_damaging(0.986) TCGA-CG-5721-01 14 54976688 54976688 T C CGRRF1 Missense_Mutation p.V4A 0.11 tolerated(0.1) benign(0.002) TCGA-CG-5721-01 14 55434067 55434067 G A WDHD1 Silent p.R703R 0.18 TCGA-CG-5721-01 14 57675323 57675323 A G EXOC5 3'UTR 0.19 TCGA-CG-5721-01 14 57700561 57700561 A G EXOC5 Missense_Mutation p.I252T 0.15 tolerated(0.16) benign(0) TCGA-CG-5721-01 14 57863507 57863507 G A NAA30 Missense_Mutation p.C270Y 0.26 deleterious(0) probably_damaging(0.995) TCGA-CG-5721-01 14 58056071 58056071 T C SLC35F4 Silent p.K186K 0.12 TCGA-CG-5721-01 14 59014534 59014534 C - KIAA0586 Frame_Shift_Del p.C1594Afs*37 0.21 TCGA-CG-5721-01 14 59112667 59112667 C T DACT1 Silent p.G442G 0.12 TCGA-CG-5721-01 14 59814284 59814284 A G DAAM1 Silent p.K711K 0.13 TCGA-CG-5721-01 14 59930515 59930515 G A GPR135 Missense_Mutation p.P477L 0.21 tolerated(0.17) benign(0.004) TCGA-CG-5721-01 14 59930686 59930686 G A GPR135 Missense_Mutation p.P420L 0.41 tolerated(0.45) benign(0.004) TCGA-CG-5721-01 14 59961870 59961870 A G JKAMP Missense_Mutation p.Y129C 0.22 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 14 60212668 60212668 G A RTN1 Missense_Mutation p.S258F 0.17 deleterious(0) possibly_damaging(0.73) TCGA-CG-5721-01 14 61186582 61186582 C A SIX4 Missense_Mutation p.G482V 0.18 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 14 61509874 61509874 A - SLC38A6 Frame_Shift_Del p.K213Nfs*8 0.13 TCGA-CG-5721-01 14 62188501 62188501 T C HIF1A Silent p.C163C 0.22 TCGA-CG-5721-01 14 64591849 64591849 A G SYNE2 Missense_Mutation p.Y4492C 0.26 benign(0.033) TCGA-CG-5721-01 14 64988891 64988891 T C ZBTB1 Silent p.F223F 0.20 TCGA-CG-5721-01 14 65260381 65260381 T C SPTB Missense_Mutation p.K667R 0.11 tolerated(0.45) benign(0.074) TCGA-CG-5721-01 14 65398991 65398991 A G CHURC1 3'UTR 0.08 TCGA-CG-5721-01 14 65418332 65418332 G A RAB15 Missense_Mutation p.R79W 0.22 deleterious(0) probably_damaging(0.964) TCGA-CG-5721-01 14 66135985 66135985 A - FUT8 Frame_Shift_Del p.K209Sfs*24 0.22 TCGA-CG-5721-01 14 66975197 66975197 G A GPHN 5'UTR 0.16 TCGA-CG-5721-01 14 68250106 68250106 T C ZFYVE26 Missense_Mutation p.T1255A 0.19 tolerated(0.83) benign(0.001) TCGA-CG-5721-01 14 68353896 68353896 A G RAD51B Missense_Mutation p.Y244C 0.20 deleterious(0.03) probably_damaging(0.962) TCGA-CG-5721-01 14 69520539 69520539 T C DCAF5 3'UTR 0.19 TCGA-CG-5721-01 14 72056089 72056089 T C SIPA1L1 Splice_Site p.X500_splice 0.15 TCGA-CG-5721-01 14 72172041 72172044 CAAA - SIPA1L1 Frame_Shift_Del p.Q1274Gfs*95 0.16 TCGA-CG-5721-01 14 72202057 72202057 A G SIPA1L1 Missense_Mutation p.N1712S 0.18 tolerated(0.8) benign(0.008) TCGA-CG-5721-01 14 72985085 72985085 A C RGS6 Missense_Mutation p.K373T 0.30 deleterious(0) probably_damaging(0.998) TCGA-CG-5721-01 14 73002943 73002943 G A RGS6 Missense_Mutation p.R443Q 0.16 deleterious(0) probably_damaging(0.981) TCGA-CG-5721-01 14 73544179 73544179 A G RBM25 Missense_Mutation p.T87A 0.25 probably_damaging(0.989) TCGA-CG-5721-01 14 73718794 73718794 C T PAPLN Silent p.P277P 0.19 TCGA-CG-5721-01 14 73967394 73967394 C T HEATR4 Missense_Mutation p.A716T 0.19 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 14 74206530 74206530 G T ELMSAN1 Missense_Mutation p.P61H 0.23 deleterious(0) probably_damaging(0.922) TCGA-CG-5721-01 14 74424724 74424724 T - ENTPD5 3'Flank 0.27 TCGA-CG-5721-01 14 74522353 74522353 A G CCDC176 Silent p.R451R 0.04 TCGA-CG-5721-01 14 74531500 74531500 A G CCDC176 3'UTR 0.23 TCGA-CG-5721-01 14 74754962 74754962 A G ABCD4 Missense_Mutation p.S503P 0.28 tolerated(0.05) benign(0.053) TCGA-CG-5721-01 14 74757053 74757053 G A ABCD4 Missense_Mutation p.T423M 0.26 deleterious(0) probably_damaging(0.932) TCGA-CG-5721-01 14 74762622 74762622 G A ABCD4 Silent p.N201N 0.26 TCGA-CG-5721-01 14 75230218 75230218 G A YLPM1 Missense_Mutation p.G9D 0.28 unknown(0) TCGA-CG-5721-01 14 75265004 75265004 C T YLPM1 Missense_Mutation p.R1002W 0.21 probably_damaging(0.96) TCGA-CG-5721-01 14 75276388 75276389 - C YLPM1 Frame_Shift_Ins p.P1612Tfs*30 0.23 TCGA-CG-5721-01 14 75515935 75515935 C T MLH3 Missense_Mutation p.A142T 0.19 tolerated(0.07) benign(0.009) TCGA-CG-5721-01 14 76012903 76012903 C T BATF Silent p.H89H 0.39 TCGA-CG-5721-01 14 76088483 76088483 A G FLVCR2 Missense_Mutation p.D244G 0.17 deleterious(0.04) benign(0.03) TCGA-CG-5721-01 14 76427332 76427332 G T TGFB3 Silent p.G338G 0.26 TCGA-CG-5721-01 14 76668165 76668165 C A GPATCH2L Missense_Mutation p.P474T 0.13 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CG-5721-01 14 77745125 77745125 A G POMT2 Missense_Mutation p.V660A 0.14 deleterious(0) possibly_damaging(0.687) TCGA-CG-5721-01 14 77751306 77751306 A G POMT2 Silent p.H521H 0.21 TCGA-CG-5721-01 14 77900221 77900221 T C VIPAS39 Silent p.R381R 0.17 TCGA-CG-5721-01 14 77951099 77951099 A G ISM2 Missense_Mutation p.V102A 0.18 tolerated_low_confidence(0.51) possibly_damaging(0.857) TCGA-CG-5721-01 14 79432495 79432495 T C NRXN3 Silent p.N468N 0.19 TCGA-CG-5721-01 14 79432705 79432705 T C NRXN3 Silent p.N538N 0.22 TCGA-CG-5721-01 14 80328021 80328021 C T NRXN3 Missense_Mutation p.P967L 0.22 deleterious(0.02) benign(0) TCGA-CG-5721-01 14 81259277 81259277 T C CEP128 Missense_Mutation p.S463G 0.21 tolerated(0.4) benign(0.075) TCGA-CG-5721-01 14 81610702 81610702 A G TSHR 3'UTR 0.19 TCGA-CG-5721-01 14 88478206 88478206 A G GPR65 3'UTR 0.17 TCGA-CG-5721-01 14 88946106 88946106 T C PTPN21 Missense_Mutation p.I557V 0.27 tolerated(0.31) probably_damaging(0.982) TCGA-CG-5721-01 14 89091363 89091363 A G EML5 Missense_Mutation p.Y1617H 0.22 deleterious(0.02) probably_damaging(0.987) TCGA-CG-5721-01 14 89343845 89343845 A G TTC8 3'UTR 0.17 TCGA-CG-5721-01 14 92403440 92403440 C T FBLN5 Missense_Mutation p.R77Q 0.22 tolerated(0.59) possibly_damaging(0.716) TCGA-CG-5721-01 14 92436177 92436177 G A TRIP11 Missense_Mutation p.S1927L 0.24 deleterious(0.04) probably_damaging(0.999) TCGA-CG-5721-01 14 92560124 92560124 T C ATXN3 Missense_Mutation p.S96G 0.22 deleterious(0.01) possibly_damaging(0.826) TCGA-CG-5721-01 14 92909143 92909143 G A SLC24A4 Missense_Mutation p.G189R 0.17 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 14 93282672 93282672 T C GOLGA5 Missense_Mutation p.M466T 0.15 tolerated(0.06) benign(0.009) TCGA-CG-5721-01 14 93398722 93398722 G A CHGA Silent p.S272S 0.25 TCGA-CG-5721-01 14 93653029 93653029 T - TMEM251 3'UTR 0.17 TCGA-CG-5721-01 14 94088327 94088327 T C UNC79 Missense_Mutation p.L1406S 0.22 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CG-5721-01 14 94395058 94395058 C T FAM181A Missense_Mutation p.P205S 0.14 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 14 94849555 94849556 - A SERPINA1 Frame_Shift_Ins p.W7Lfs*19 0.18 TCGA-CG-5721-01 14 94964479 94964479 G A SERPINA12 Silent p.L86L 0.22 TCGA-CG-5721-01 14 94964535 94964535 T C SERPINA12 Missense_Mutation p.N67S 0.19 tolerated(1) benign(0.001) TCGA-CG-5721-01 14 96707338 96707338 A G BDKRB2 Missense_Mutation p.N225D 0.09 tolerated(0.17) probably_damaging(0.993) TCGA-CG-5721-01 14 96752298 96752298 T C ATG2B Missense_Mutation p.I2011V 0.14 deleterious(0) possibly_damaging(0.847) TCGA-CG-5721-01 14 96811655 96811655 A G ATG2B Silent p.C131C 0.24 TCGA-CG-5721-01 14 96998552 96998552 A G PAPOLA Intron 0.20 TCGA-CG-5721-01 15 100339850 100339850 T C DNM1P46 RNA 0.25 TCGA-CG-5721-01 15 100589167 100589167 C T ADAMTS17 Missense_Mutation p.R829Q 0.18 tolerated(0.18) benign(0.029) TCGA-CG-5721-01 15 101924598 101924598 A C PCSK6 Missense_Mutation p.L447R 0.13 deleterious(0) probably_damaging(0.99) TCGA-CG-5721-01 15 101933449 101933449 A G PCSK6 Missense_Mutation p.Y392H 0.13 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 15 101938635 101938635 G A PCSK6 Nonsense_Mutation p.Q323* 0.20 TCGA-CG-5721-01 15 102194734 102194734 T - TARSL2 3'UTR 0.29 TCGA-CG-5721-01 15 102197159 102197159 T C TARSL2 Silent p.R742R 0.22 TCGA-CG-5721-01 15 102346378 102346378 T C OR4F6 Silent p.G152G 0.21 TCGA-CG-5721-01 15 22368607 22368607 A G OR4M2 Missense_Mutation p.E11G 0.09 deleterious(0.02) possibly_damaging(0.889) TCGA-CG-5721-01 15 22368757 22368757 T A OR4M2 Missense_Mutation p.F61Y 0.09 tolerated(0.06) probably_damaging(0.995) TCGA-CG-5721-01 15 22955229 22955229 C T CYFIP1 Silent p.S541S 0.10 TCGA-CG-5721-01 15 22956392 22956392 A G CYFIP1 Intron 0.19 TCGA-CG-5721-01 15 23049143 23049143 C T NIPA1 Missense_Mutation p.A226T 0.23 tolerated(0.06) probably_damaging(0.985) TCGA-CG-5721-01 15 23049189 23049189 C T NIPA1 Silent p.G210G 0.11 TCGA-CG-5721-01 15 24921511 24921511 C T NPAP1 Missense_Mutation p.P166L 0.08 tolerated(0.65) benign(0.287) TCGA-CG-5721-01 15 24922752 24922752 A G NPAP1 Missense_Mutation p.T580A 0.21 deleterious(0) probably_damaging(0.992) TCGA-CG-5721-01 15 25223617 25223617 T - SNRPN 3'UTR 0.22 TCGA-CG-5721-01 15 25351699 25351699 T G SNORD116-29 RNA 0.21 TCGA-CG-5721-01 15 25442649 25442649 C T SNORD115-14 3'Flank 0.18 TCGA-CG-5721-01 15 25616547 25616547 T C UBE3A Silent p.V261V 0.04 TCGA-CG-5721-01 15 25924821 25924821 G A ATP10A Silent p.S1389S 0.24 TCGA-CG-5721-01 15 25940269 25940269 G C ATP10A Missense_Mutation p.Q929E 0.12 tolerated(1) benign(0.01) TCGA-CG-5721-01 15 28235761 28235761 A G OCA2 Silent p.G359G 0.16 TCGA-CG-5721-01 15 28446623 28446623 T C HERC2 Silent p.V2565V 0.11 TCGA-CG-5721-01 15 28447538 28447538 G C HERC2 Missense_Mutation p.L2479V 0.14 benign(0.107) TCGA-CG-5721-01 15 28474412 28474412 T C HERC2 Missense_Mutation p.K1734R 0.18 benign(0.046) TCGA-CG-5721-01 15 28478854 28478854 A G HERC2 Missense_Mutation p.V1436A 0.13 benign(0.444) TCGA-CG-5721-01 15 30926445 30926445 T - ARHGAP11B Frame_Shift_Del p.F125Lfs*18 0.22 TCGA-CG-5721-01 15 31197803 31197803 A G FAN1 Missense_Mutation p.K313E 0.26 tolerated(0.48) benign(0.004) TCGA-CG-5721-01 15 31247018 31247018 A G MTMR10 Silent p.N338N 0.20 TCGA-CG-5721-01 15 33855130 33855130 G A RYR3 Silent p.V355V 0.23 TCGA-CG-5721-01 15 34150099 34150099 G A RYR3 Missense_Mutation p.C4709Y 0.22 benign(0.38) TCGA-CG-5721-01 15 34444996 34444996 A - KATNBL1 Frame_Shift_Del p.S145Lfs*19 0.16 TCGA-CG-5721-01 15 34657245 34657245 A G LPCAT4 Missense_Mutation p.S148P 0.16 deleterious(0.03) probably_damaging(0.999) TCGA-CG-5721-01 15 35189126 35189126 C T AQR Missense_Mutation p.R811H 0.22 tolerated(0.2) possibly_damaging(0.462) TCGA-CG-5721-01 15 35207329 35207329 T C AQR Missense_Mutation p.Y465C 0.20 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 15 35275452 35275452 T C ZNF770 Missense_Mutation p.K62E 0.19 deleterious(0) probably_damaging(0.998) TCGA-CG-5721-01 15 35529965 35529965 G A ANP32AP1 RNA 0.22 TCGA-CG-5721-01 15 37385877 37385877 T C MEIS2 Missense_Mutation p.K182E 0.21 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 15 38786879 38786879 C T RASGRP1 Missense_Mutation p.V655M 0.20 tolerated(0.23) possibly_damaging(0.73) TCGA-CG-5721-01 15 39893115 39893115 G C FSIP1 Missense_Mutation p.T571S 0.24 tolerated_low_confidence(0.23) benign(0.013) TCGA-CG-5721-01 15 40034063 40034063 A G FSIP1 Missense_Mutation p.F200L 0.20 deleterious(0.03) probably_damaging(0.999) TCGA-CG-5721-01 15 40260054 40260054 A G EIF2AK4 Silent p.P509P 0.28 TCGA-CG-5721-01 15 40951543 40951543 A G CASC5 Silent p.R2266R 0.15 TCGA-CG-5721-01 15 41276438 41276438 G A INO80 Missense_Mutation p.S1345F 0.32 deleterious(0.01) possibly_damaging(0.896) TCGA-CG-5721-01 15 41379768 41379768 T C INO80 Missense_Mutation p.K217R 0.19 tolerated(0.19) probably_damaging(0.989) TCGA-CG-5721-01 15 41864656 41864656 G A TYRO3 Missense_Mutation p.S590N 0.18 tolerated(0.41) benign(0.053) TCGA-CG-5721-01 15 41870425 41870425 A G TYRO3 Missense_Mutation p.Q875R 0.20 tolerated_low_confidence(0.34) benign(0.002) TCGA-CG-5721-01 15 42171952 42171952 C T SPTBN5 Silent p.Q974Q 0.13 TCGA-CG-5721-01 15 42512335 42512335 T C TMEM87A Splice_Site p.X468_splice 0.17 TCGA-CG-5721-01 15 42652008 42652008 C T CAPN3 Missense_Mutation p.P2L 0.18 deleterious_low_confidence(0) benign(0.021) TCGA-CG-5721-01 15 42693866 42693866 G A CAPN3 Missense_Mutation p.R461H 0.19 tolerated(0.06) probably_damaging(0.994) TCGA-CG-5721-01 15 43244513 43244513 C T UBR1 Missense_Mutation p.A1657T 0.23 tolerated(0.73) benign(0.292) TCGA-CG-5721-01 15 43258414 43258414 G A UBR1 Missense_Mutation p.R1510C 0.22 deleterious(0) possibly_damaging(0.892) TCGA-CG-5721-01 15 43350584 43350584 A - UBR1 Frame_Shift_Del p.F379Lfs*15 0.24 TCGA-CG-5721-01 15 43441276 43441276 A G TMEM62 Missense_Mutation p.M265V 0.19 tolerated(0.46) benign(0.013) TCGA-CG-5721-01 15 43508513 43508513 C T EPB42 Missense_Mutation p.R80H 0.19 tolerated(1) benign(0.001) TCGA-CG-5721-01 15 43548792 43548792 G A TGM5 Missense_Mutation p.R177C 0.18 tolerated(0.18) benign(0.007) TCGA-CG-5721-01 15 43568758 43568758 C T TGM7 Silent p.P676P 0.13 TCGA-CG-5721-01 15 43733757 43733757 T - TP53BP1 Frame_Shift_Del p.N1022Mfs*20 0.17 TCGA-CG-5721-01 15 43817423 43817423 C T MAP1A Missense_Mutation p.A1251V 0.21 benign(0.024) TCGA-CG-5721-01 15 43819209 43819209 G A MAP1A Silent p.V1846V 0.14 TCGA-CG-5721-01 15 43928252 43928252 T C CATSPER2 Missense_Mutation p.I336M 0.13 tolerated(0.09) probably_damaging(0.985) TCGA-CG-5721-01 15 43990846 43990846 G A CKMT1A Missense_Mutation p.R340H 0.18 deleterious(0.01) possibly_damaging(0.784) TCGA-CG-5721-01 15 44065395 44065395 A G ELL3 Silent p.R371R 0.21 TCGA-CG-5721-01 15 44149345 44149345 A G WDR76 Missense_Mutation p.I465V 0.10 tolerated(0.73) benign(0.002) TCGA-CG-5721-01 15 44913997 44913997 T C SPG11 Silent p.L860L 0.22 TCGA-CG-5721-01 15 44914121 44914121 T A SPG11 Missense_Mutation p.K819M 0.19 tolerated(0.06) benign(0.15) TCGA-CG-5721-01 15 45007737 45007755 AATGGAGAGAGAATTGAAA - B2M Frame_Shift_Del p.N62Kfs*35 0.16 TCGA-CG-5721-01 15 45007825 45007825 C - B2M Frame_Shift_Del p.T93Lfs*10 0.16 TCGA-CG-5721-01 15 45007846 45007846 A G B2M Missense_Mutation p.Y98C 0.16 deleterious(0) probably_damaging(0.994) TCGA-CG-5721-01 15 45050837 45050837 C A TRIM69 Missense_Mutation p.Q200K 0.20 tolerated(0.32) benign(0.006) TCGA-CG-5721-01 15 45567685 45567685 T C SLC28A2 Missense_Mutation p.F651L 0.16 tolerated(0.81) benign(0.002) TCGA-CG-5721-01 15 45658660 45658660 T C GATM Missense_Mutation p.Q241R 0.15 tolerated(0.42) benign(0.001) TCGA-CG-5721-01 15 45702638 45702638 G A SPATA5L1 Silent p.S448S 0.19 TCGA-CG-5721-01 15 48056245 48056245 T C SEMA6D Missense_Mutation p.F316L 0.22 deleterious(0) probably_damaging(0.997) TCGA-CG-5721-01 15 48580325 48580325 A G SLC12A1 Silent p.K905K 0.25 TCGA-CG-5721-01 15 48707828 48707828 A G FBN1 Silent p.C2652C 0.14 TCGA-CG-5721-01 15 49048376 49048376 A G CEP152 Silent p.S1023S 0.17 TCGA-CG-5721-01 15 49076171 49076171 G A CEP152 Silent p.S440S 0.12 TCGA-CG-5721-01 15 49833967 49833967 T C FAM227B Missense_Mutation p.T262A 0.18 tolerated(0.48) benign(0.019) TCGA-CG-5721-01 15 50578211 50578211 T A GABPB1 Intron 0.17 TCGA-CG-5721-01 15 50786251 50786251 A G USP8 Intron 0.23 TCGA-CG-5721-01 15 50867177 50867177 A T TRPM7 Missense_Mutation p.C1631S 0.19 tolerated(0.29) possibly_damaging(0.838) TCGA-CG-5721-01 15 50897284 50897284 A G TRPM7 Missense_Mutation p.Y923H 0.14 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 15 51028334 51028334 A G SPPL2A Missense_Mutation p.V299A 0.18 tolerated(0.13) benign(0.004) TCGA-CG-5721-01 15 51350348 51350348 G A TNFAIP8L3 Silent p.T203T 0.23 TCGA-CG-5721-01 15 51503171 51503171 G A CYP19A1 Missense_Mutation p.A449V 0.17 tolerated(0.3) benign(0.001) TCGA-CG-5721-01 15 51827880 51827880 A G DMXL2 Silent p.L806L 0.17 TCGA-CG-5721-01 15 52662616 52662616 T C MYO5A Splice_Site p.X940_splice 0.23 TCGA-CG-5721-01 15 52668673 52668673 T C MYO5A Missense_Mutation p.D764G 0.10 deleterious(0) benign(0.22) TCGA-CG-5721-01 15 52902434 52902434 G A FAM214A Missense_Mutation p.T226M 0.18 deleterious(0.02) benign(0.327) TCGA-CG-5721-01 15 53049965 53049965 G A ONECUT1 Silent p.V395V 0.18 TCGA-CG-5721-01 15 53081197 53081197 T G ONECUT1 Missense_Mutation p.K295N 0.20 deleterious(0) probably_damaging(0.991) TCGA-CG-5721-01 15 54793148 54793148 T A UNC13C Nonsense_Mutation p.L1758* 0.18 TCGA-CG-5721-01 15 54803967 54803967 A G UNC13C Missense_Mutation p.N1799S 0.16 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-CG-5721-01 15 54919371 54919371 A G UNC13C 3'UTR 0.35 TCGA-CG-5721-01 15 54919390 54919390 T C UNC13C 3'UTR 0.40 TCGA-CG-5721-01 15 55632864 55632864 A G PIGB Missense_Mutation p.T301A 0.19 tolerated(0.3) benign(0.013) TCGA-CG-5721-01 15 55652756 55652756 A G CCPG1 Silent p.G405G 0.23 TCGA-CG-5721-01 15 55665187 55665187 A G CCPG1 Intron 0.21 TCGA-CG-5721-01 15 55972312 55972312 G A PRTG Missense_Mutation p.R305W 0.13 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 15 56140717 56140717 A G NEDD4 Splice_Site p.X842_splice 0.21 TCGA-CG-5721-01 15 56207860 56207860 A G NEDD4 Silent p.C390C 0.16 TCGA-CG-5721-01 15 56958612 56958612 A G ZNF280D Missense_Mutation p.Y659H 0.12 deleterious(0) probably_damaging(0.984) TCGA-CG-5721-01 15 56970887 56970887 A G ZNF280D Silent p.S379S 0.24 TCGA-CG-5721-01 15 59186298 59186298 C T SLTM Missense_Mutation p.R491K 0.25 tolerated(1) unknown(0) TCGA-CG-5721-01 15 59323671 59323672 - A RNF111 Frame_Shift_Ins p.N219Kfs*2 0.19 TCGA-CG-5721-01 15 59387292 59387292 T - RNF111 3'UTR 0.36 TCGA-CG-5721-01 15 59417071 59417071 T C CCNB2 Missense_Mutation p.S398P 0.12 deleterious_low_confidence(0.01) benign(0.174) TCGA-CG-5721-01 15 60297214 60297214 T C FOXB1 Missense_Mutation p.Y18H 0.24 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 15 60724130 60724130 T C NARG2 Intron 0.10 TCGA-CG-5721-01 15 60747243 60747243 T C NARG2 Missense_Mutation p.Q301R 0.20 deleterious(0) probably_damaging(0.939) TCGA-CG-5721-01 15 63845976 63845977 AA - USP3 Frame_Shift_Del p.E116Afs*13 0.15 TCGA-CG-5721-01 15 63952040 63952040 G A HERC1 Missense_Mutation p.R3107C 0.18 possibly_damaging(0.847) TCGA-CG-5721-01 15 64048790 64048790 A G HERC1 Missense_Mutation p.V460A 0.14 possibly_damaging(0.766) TCGA-CG-5721-01 15 64423957 64423957 T C SNX1 Silent p.L363L 0.15 TCGA-CG-5721-01 15 64966838 64966838 G A ZNF609 Silent p.G595G 0.19 TCGA-CG-5721-01 15 64972981 64972981 G A ZNF609 Missense_Mutation p.R1361H 0.19 deleterious(0.02) probably_damaging(0.941) TCGA-CG-5721-01 15 65983159 65983159 T C DENND4A Missense_Mutation p.N1257S 0.19 tolerated(0.15) benign(0.265) TCGA-CG-5721-01 15 66161946 66161946 A G RAB11A Missense_Mutation p.Y8C 0.11 deleterious_low_confidence(0) possibly_damaging(0.869) TCGA-CG-5721-01 15 66612927 66612927 C T DIS3L Missense_Mutation p.R395C 0.33 deleterious(0) probably_damaging(0.957) TCGA-CG-5721-01 15 66797597 66797597 G T ZWILCH 5'UTR 0.22 TCGA-CG-5721-01 15 66841041 66841041 A - ZWILCH 3'UTR 0.12 TCGA-CG-5721-01 15 68438968 68438968 C T PIAS1 Missense_Mutation p.T253I 0.17 deleterious(0) probably_damaging(0.998) TCGA-CG-5721-01 15 68489899 68489899 G A RP11-315D16.2 Missense_Mutation p.P51S 0.19 unknown(0) TCGA-CG-5721-01 15 68624344 68624344 T G ITGA11 Silent p.R541R 0.14 TCGA-CG-5721-01 15 69331226 69331226 T - NOX5 Frame_Shift_Del p.H470Tfs*10 0.19 TCGA-CG-5721-01 15 69732777 69732777 G A KIF23 Missense_Mutation p.R673Q 0.19 deleterious(0.04) benign(0.397) TCGA-CG-5721-01 15 71124231 71124231 T C LARP6 3'UTR 0.27 TCGA-CG-5721-01 15 72105733 72105733 T C NR2E3 RNA 0.23 TCGA-CG-5721-01 15 72837173 72837173 A G ARIH1 Silent p.G152G 0.12 TCGA-CG-5721-01 15 73995290 73995290 A G CD276 Missense_Mutation p.Q199R 0.18 tolerated(0.09) probably_damaging(0.932) TCGA-CG-5721-01 15 74536490 74536490 G T CCDC33 Splice_Site p.X62_splice 0.13 TCGA-CG-5721-01 15 75336770 75336770 G A PPCDC Missense_Mutation p.R92Q 0.26 deleterious(0) probably_damaging(0.963) TCGA-CG-5721-01 15 75646009 75646009 T C NEIL1 Intron 0.12 TCGA-CG-5721-01 15 75651057 75651057 T C MAN2C1 Missense_Mutation p.H762R 0.11 deleterious(0) probably_damaging(0.98) TCGA-CG-5721-01 15 76303588 76303588 T C NRG4 5'UTR 0.21 TCGA-CG-5721-01 15 77020934 77020934 A G SCAPER Splice_Site p.X722_splice 0.18 TCGA-CG-5721-01 15 77472351 77472351 T C PEAK1 Missense_Mutation p.I640V 0.23 tolerated(0.72) benign(0.015) TCGA-CG-5721-01 15 77474003 77474003 A G PEAK1 Missense_Mutation p.L89P 0.18 deleterious(0.01) benign(0.1) TCGA-CG-5721-01 15 77750834 77750834 A G HMG20A Missense_Mutation p.T29A 0.23 tolerated_low_confidence(0.72) benign(0) TCGA-CG-5721-01 15 78452550 78452550 T A IDH3A Splice_Site p.X97_splice 0.20 TCGA-CG-5721-01 15 78732202 78732202 T C IREB2 Missense_Mutation p.S29P 0.28 tolerated(1) benign(0) TCGA-CG-5721-01 15 79304850 79304850 T C RASGRF1 Missense_Mutation p.R616G 0.27 tolerated(0.36) benign(0) TCGA-CG-5721-01 15 79339164 79339164 G A RASGRF1 Missense_Mutation p.R268C 0.16 deleterious(0) probably_damaging(0.987) TCGA-CG-5721-01 15 79748861 79748861 G A KIAA1024 Silent p.S124S 0.21 TCGA-CG-5721-01 15 79749423 79749423 T C KIAA1024 Missense_Mutation p.Y312H 0.20 deleterious(0) possibly_damaging(0.625) TCGA-CG-5721-01 15 80253337 80253337 A G BCL2A1 3'UTR 0.18 TCGA-CG-5721-01 15 80429859 80429859 A G ZFAND6 Silent p.V172V 0.16 TCGA-CG-5721-01 15 83328679 83328679 G A AP3B2 Missense_Mutation p.R1006W 0.24 tolerated(0.2) possibly_damaging(0.689) TCGA-CG-5721-01 15 84566740 84566740 C A ADAMTSL3 Missense_Mutation p.P533Q 0.24 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 15 85164847 85164847 A G ZSCAN2 Missense_Mutation p.Y474C 0.19 deleterious(0) probably_damaging(0.998) TCGA-CG-5721-01 15 85400267 85400267 A - ALPK3 Frame_Shift_Del p.K970Nfs*12 0.20 TCGA-CG-5721-01 15 85411579 85411579 T C ALPK3 Silent p.S1872S 0.22 TCGA-CG-5721-01 15 85664157 85664157 A G PDE8A Missense_Mutation p.T622A 0.18 tolerated(0.22) benign(0.031) TCGA-CG-5721-01 15 86064750 86064750 G A AKAP13 Missense_Mutation p.R42H 0.17 tolerated(1) benign(0) TCGA-CG-5721-01 15 86278223 86278223 T C AKAP13 Missense_Mutation p.V2432A 0.04 tolerated(0.08) possibly_damaging(0.55) TCGA-CG-5721-01 15 86284281 86284281 T C AKAP13 Missense_Mutation p.V2542A 0.10 deleterious(0.04) possibly_damaging(0.55) TCGA-CG-5721-01 15 89421322 89421322 A G HAPLN3 Missense_Mutation p.V321A 0.18 tolerated(0.22) benign(0.052) TCGA-CG-5721-01 15 89694928 89694928 G - ABHD2 Frame_Shift_Del p.S75Vfs*15 0.15 TCGA-CG-5721-01 15 90021067 90021067 C T RHCG Splice_Site p.X325_splice 0.18 TCGA-CG-5721-01 15 90026320 90026320 A G RHCG Missense_Mutation p.F167S 0.12 deleterious(0) benign(0.271) TCGA-CG-5721-01 15 90167812 90167812 A G TICRR Missense_Mutation p.Q1424R 0.17 tolerated(0.07) benign(0.081) TCGA-CG-5721-01 15 90171867 90171867 G A KIF7 Missense_Mutation p.P1272L 0.21 deleterious(0) benign(0.369) TCGA-CG-5721-01 15 90346959 90346959 G T ANPEP Silent p.S452S 0.17 TCGA-CG-5721-01 15 90766816 90766816 T C SEMA4B Missense_Mutation p.L296P 0.19 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 15 90972889 90972889 A G IQGAP1 Silent p.G127G 0.20 TCGA-CG-5721-01 15 90984789 90984789 C T IQGAP1 Missense_Mutation p.A234V 0.17 tolerated(0.19) benign(0.002) TCGA-CG-5721-01 15 91435964 91435964 C T FES Missense_Mutation p.R579C 0.29 deleterious(0.03) probably_damaging(0.974) TCGA-CG-5721-01 15 91437188 91437188 C T FES Silent p.D742D 0.24 TCGA-CG-5721-01 15 91449168 91449168 G A MAN2A2 Missense_Mutation p.R210H 0.23 deleterious(0) benign(0.032) TCGA-CG-5721-01 15 91493834 91493834 C T UNC45A Silent p.S764S 0.15 TCGA-CG-5721-01 15 96877521 96877521 T C NR2F2 Missense_Mutation p.L220P 0.18 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 15 99029181 99029181 G T FAM169B 5'UTR 0.16 TCGA-CG-5721-01 16 10626674 10626674 A - EMP2 3'UTR 0.14 TCGA-CG-5721-01 16 108423 108423 G A RHBDF1 Silent p.R828R 0.16 TCGA-CG-5721-01 16 11001507 11001507 C A CIITA Missense_Mutation p.L720M 0.20 tolerated(0.11) benign(0.141) TCGA-CG-5721-01 16 11348957 11348957 G A SOCS1 Missense_Mutation p.R127C 0.19 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 16 11861389 11861389 T G ZC3H7A Missense_Mutation p.K469T 0.19 deleterious(0.02) probably_damaging(0.938) TCGA-CG-5721-01 16 11868834 11868834 A G ZC3H7A Splice_Site p.X207_splice 0.16 TCGA-CG-5721-01 16 1262117 1262117 C T CACNA1H Missense_Mutation p.R1580C 0.25 deleterious(0.01) possibly_damaging(0.891) TCGA-CG-5721-01 16 1272025 1272025 A G TPSG1 Silent p.G243G 0.21 TCGA-CG-5721-01 16 12798799 12798799 T C CPPED1 Missense_Mutation p.T133A 0.20 tolerated(0.52) benign(0.001) TCGA-CG-5721-01 16 1394813 1394813 A G BAIAP3 Missense_Mutation p.D626G 0.15 tolerated(0.13) probably_damaging(0.996) TCGA-CG-5721-01 16 14354893 14354893 A G MKL2 Silent p.P914P 0.12 TCGA-CG-5721-01 16 14761802 14761802 G A BFAR 3'UTR 0.14 TCGA-CG-5721-01 16 14989792 14989792 C A NOMO1 3'UTR 0.13 TCGA-CG-5721-01 16 15132496 15132496 A G NTAN1 Missense_Mutation p.Y230H 0.21 deleterious(0) possibly_damaging(0.844) TCGA-CG-5721-01 16 15155702 15155702 C T RRN3 Missense_Mutation p.V619M 0.26 tolerated(0.25) benign(0.003) TCGA-CG-5721-01 16 1556270 1556270 C T TELO2 Missense_Mutation p.P689L 0.29 deleterious(0) benign(0.18) TCGA-CG-5721-01 16 15725274 15725274 T C KIAA0430 Missense_Mutation p.T439A 0.23 deleterious(0.01) benign(0.428) TCGA-CG-5721-01 16 15797685 15797685 G A MYH11 3'UTR 0.23 TCGA-CG-5721-01 16 15797824 15797824 T C MYH11 3'UTR 0.18 TCGA-CG-5721-01 16 15842010 15842010 C T MYH11 Missense_Mutation p.A699T 0.18 possibly_damaging(0.745) TCGA-CG-5721-01 16 15853509 15853509 T C MYH11 Missense_Mutation p.K449R 0.21 probably_damaging(0.993) TCGA-CG-5721-01 16 1652558 1652558 G A IFT140 Missense_Mutation p.P61L 0.21 tolerated(0.14) benign(0.012) TCGA-CG-5721-01 16 17211735 17211735 T A XYLT1 Silent p.G775G 0.23 TCGA-CG-5721-01 16 17292097 17292097 T C XYLT1 Missense_Mutation p.N421D 0.29 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 16 1797135 1797135 G A MAPK8IP3 Missense_Mutation p.A284T 0.13 tolerated(0.33) benign(0.004) TCGA-CG-5721-01 16 1812944 1812944 G A MAPK8IP3 Missense_Mutation p.R611H 0.24 deleterious(0.01) probably_damaging(0.942) TCGA-CG-5721-01 16 1818228 1818228 G T MAPK8IP3 Missense_Mutation p.E1196D 0.22 tolerated(0.52) benign(0.176) TCGA-CG-5721-01 16 1836918 1836918 C T NUBP2 Missense_Mutation p.P99L 0.21 tolerated(0.11) benign(0.052) TCGA-CG-5721-01 16 18859270 18859270 A G SMG1 Silent p.S1903S 0.23 TCGA-CG-5721-01 16 18863428 18863428 A G SMG1 Silent p.G1671G 0.18 TCGA-CG-5721-01 16 19089418 19089418 G A COQ7 Missense_Mutation p.V198I 0.18 tolerated(0.45) benign(0.005) TCGA-CG-5721-01 16 19475299 19475299 A - TMC5 Frame_Shift_Del p.K481Rfs*22 0.20 TCGA-CG-5721-01 16 19514727 19514727 T C GDE1 3'UTR 0.13 TCGA-CG-5721-01 16 19613036 19613036 G A C16orf62 Missense_Mutation p.V348I 0.19 tolerated(0.34) benign(0) TCGA-CG-5721-01 16 19884072 19884072 G A GPRC5B Silent p.S32S 0.18 TCGA-CG-5721-01 16 2018579 2018579 C A RNF151 Silent p.R131R 0.21 TCGA-CG-5721-01 16 20325983 20325983 A G GP2 Silent p.T517T 0.12 TCGA-CG-5721-01 16 20451828 20451828 A G ACSM5 3'UTR 0.13 TCGA-CG-5721-01 16 2048327 2048327 A G ZNF598 Missense_Mutation p.L874P 0.17 probably_damaging(1) TCGA-CG-5721-01 16 20873427 20873427 A G DCUN1D3 Intron 0.24 TCGA-CG-5721-01 16 20946788 20946788 G T DNAH3 Missense_Mutation p.P3960H 0.17 deleterious(0) benign(0.056) TCGA-CG-5721-01 16 20966223 20966223 A G DNAH3 Silent p.C3661C 0.12 TCGA-CG-5721-01 16 21117982 21117982 A G DNAH3 Missense_Mutation p.Y705H 0.14 deleterious(0) probably_damaging(0.95) TCGA-CG-5721-01 16 21209140 21209140 C A ZP2 Missense_Mutation p.G681V 0.21 tolerated_low_confidence(0.34) benign(0.005) TCGA-CG-5721-01 16 21216742 21216742 A G ZP2 Missense_Mutation p.V231A 0.17 tolerated(0.69) benign(0.009) TCGA-CG-5721-01 16 21288787 21288787 G T CRYM Missense_Mutation p.L97I 0.15 tolerated(0.24) benign(0.394) TCGA-CG-5721-01 16 2153699 2153699 G A PKD1 Missense_Mutation p.R2787C 0.29 probably_damaging(0.995) TCGA-CG-5721-01 16 21654458 21654458 A G IGSF6 Silent p.R201R 0.34 TCGA-CG-5721-01 16 2237034 2237034 T A CASKIN1 Missense_Mutation p.Y292F 0.19 probably_damaging(0.999) TCGA-CG-5721-01 16 2259973 2259973 C T BRICD5 Missense_Mutation p.R139Q 0.29 tolerated(1) benign(0.007) TCGA-CG-5721-01 16 2278379 2278379 A G E4F1 Missense_Mutation p.D55G 0.20 deleterious(0) possibly_damaging(0.643) TCGA-CG-5721-01 16 23540844 23540844 A G EARS2 Missense_Mutation p.V444A 0.16 tolerated(0.74) benign(0.001) TCGA-CG-5721-01 16 23632760 23632760 A G PALB2 Silent p.T1012T 0.15 TCGA-CG-5721-01 16 23641278 23641278 T C PALB2 Missense_Mutation p.T733A 0.13 tolerated(0.47) benign(0.02) TCGA-CG-5721-01 16 2369674 2369674 A G ABCA3 Missense_Mutation p.Y261H 0.16 tolerated(0.49) benign(0.091) TCGA-CG-5721-01 16 23700987 23700987 A G PLK1 Missense_Mutation p.N533S 0.15 deleterious(0.02) probably_damaging(0.953) TCGA-CG-5721-01 16 23712303 23712303 A G ERN2 Missense_Mutation p.W494R 0.18 deleterious(0.01) possibly_damaging(0.898) TCGA-CG-5721-01 16 24231485 24231485 C T PRKCB 3'UTR 0.15 TCGA-CG-5721-01 16 24581291 24581291 A G RBBP6 Missense_Mutation p.K1094E 0.12 deleterious_low_confidence(0) unknown(0) TCGA-CG-5721-01 16 2522124 2522124 G A NTN3 Missense_Mutation p.G141D 0.16 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 16 27246576 27246576 T C NSMCE1 Missense_Mutation p.N61D 0.27 deleterious(0) probably_damaging(0.998) TCGA-CG-5721-01 16 27374428 27374428 T C IL4R Silent p.G585G 0.24 TCGA-CG-5721-01 16 27500487 27500487 C A GTF3C1 Missense_Mutation p.E1102D 0.13 tolerated(0.07) benign(0.038) TCGA-CG-5721-01 16 27761462 27761462 A G KIAA0556 Missense_Mutation p.T1061A 0.10 tolerated(0.35) benign(0.001) TCGA-CG-5721-01 16 2816641 2816641 C T SRRM2 Missense_Mutation p.P2038S 0.29 unknown(0) TCGA-CG-5721-01 16 28503056 28503056 G A CLN3 Missense_Mutation p.R9W 0.30 tolerated_low_confidence(0.07) benign(0.006) TCGA-CG-5721-01 16 28603680 28603680 T C SULT1A2 Missense_Mutation p.T227A 0.20 deleterious(0.01) possibly_damaging(0.885) TCGA-CG-5721-01 16 29816670 29816670 A G KIF22 3'UTR 0.20 TCGA-CG-5721-01 16 29818672 29818672 C T MAZ Missense_Mutation p.P189L 0.17 tolerated(0.06) probably_damaging(0.958) TCGA-CG-5721-01 16 29820119 29820119 C T MAZ Intron 0.39 TCGA-CG-5721-01 16 29831039 29831039 C T PAGR1 Silent p.S243S 0.25 TCGA-CG-5721-01 16 29848270 29848270 C T MVP Silent p.R300R 0.09 TCGA-CG-5721-01 16 29853294 29853294 T C MVP Missense_Mutation p.S499P 0.16 deleterious(0) probably_damaging(0.979) TCGA-CG-5721-01 16 29999006 29999006 G A TAOK2 Missense_Mutation p.R1138H 0.22 tolerated_low_confidence(0.17) benign(0.001) TCGA-CG-5721-01 16 30100530 30100530 G A TBX6 Missense_Mutation p.R119C 0.17 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 16 30106009 30106009 G A YPEL3 Intron 0.19 TCGA-CG-5721-01 16 30199327 30199327 T C CORO1A Missense_Mutation p.M309T 0.25 tolerated(1) possibly_damaging(0.451) TCGA-CG-5721-01 16 3024084 3024084 C T PKMYT1 Silent p.P409P 0.27 TCGA-CG-5721-01 16 30455783 30455783 A G SEPHS2 Silent p.V422V 0.15 TCGA-CG-5721-01 16 30507448 30507448 G T ITGAL Missense_Mutation p.G512W 0.19 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 16 30528332 30528333 - A ITGAL Frame_Shift_Ins p.T968Nfs*34 0.27 TCGA-CG-5721-01 16 3063692 3063692 A G CLDN9 Missense_Mutation p.D110G 0.13 tolerated(0.08) probably_damaging(0.931) TCGA-CG-5721-01 16 3066025 3066025 C T CLDN6 5'UTR 0.17 TCGA-CG-5721-01 16 30723629 30723629 A G SRCAP Missense_Mutation p.Y621C 0.16 unknown(0) TCGA-CG-5721-01 16 30734392 30734392 C T SRCAP Missense_Mutation p.P1334L 0.24 possibly_damaging(0.726) TCGA-CG-5721-01 16 30975497 30975497 C - SETD1A Frame_Shift_Del p.C243Afs*254 0.26 TCGA-CG-5721-01 16 31012272 31012272 T G STX1B Missense_Mutation p.N86T 0.25 deleterious(0.04) benign(0.067) TCGA-CG-5721-01 16 31073349 31073349 G A ZNF668 Silent p.R323R 0.18 TCGA-CG-5721-01 16 3119519 3119519 T G IL32 3'UTR 0.18 TCGA-CG-5721-01 16 31202336 31202336 C T FUS Silent p.G482G 0.13 TCGA-CG-5721-01 16 31228272 31228272 C T PYDC1 Silent p.K26K 0.25 TCGA-CG-5721-01 16 31288050 31288050 C T ITGAM Silent p.S356S 0.25 TCGA-CG-5721-01 16 3139421 3139421 G A ZSCAN10 Missense_Mutation p.R617C 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-CG-5721-01 16 31422138 31422138 C T ITGAD Missense_Mutation p.A432V 0.15 tolerated(1) benign(0.001) TCGA-CG-5721-01 16 31488739 31488739 C T TGFB1I1 Missense_Mutation p.L410F 0.50 deleterious(0) probably_damaging(0.974) TCGA-CG-5721-01 16 3297108 3297108 C T MEFV Missense_Mutation p.D499N 0.21 tolerated(0.44) benign(0.009) TCGA-CG-5721-01 16 3363138 3363138 T C ZNF75A Silent p.D21D 0.15 TCGA-CG-5721-01 16 3640761 3640761 T C SLX4 Missense_Mutation p.S960G 0.15 tolerated(0.2) benign(0.007) TCGA-CG-5721-01 16 364605 364605 G A AXIN1 Silent p.N319N 0.16 TCGA-CG-5721-01 16 3707235 3707235 A G DNASE1 Silent p.R199R 0.23 TCGA-CG-5721-01 16 3828788 3828788 G A CREBBP Silent p.P618P 0.23 TCGA-CG-5721-01 16 4492327 4492327 T C DNAJA3 Missense_Mutation p.V230A 0.20 deleterious(0) benign(0.405) TCGA-CG-5721-01 16 4513759 4513759 C T NMRAL1 Missense_Mutation p.V208I 0.27 tolerated(1) benign(0.004) TCGA-CG-5721-01 16 48174690 48174690 G A ABCC12 Missense_Mutation p.R189C 0.21 deleterious(0.02) probably_damaging(0.988) TCGA-CG-5721-01 16 48396053 48396053 A - SIAH1 Frame_Shift_Del p.F127Sfs*12 0.26 TCGA-CG-5721-01 16 48576961 48576961 T C N4BP1 Missense_Mutation p.R849G 0.12 deleterious(0) probably_damaging(0.998) TCGA-CG-5721-01 16 48580154 48580154 T C N4BP1 Missense_Mutation p.Y746C 0.21 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 16 48596113 48596113 T C N4BP1 Silent p.L147L 0.21 TCGA-CG-5721-01 16 4911013 4911013 G A UBN1 Silent p.G340G 0.20 TCGA-CG-5721-01 16 49313496 49313496 T C CBLN1 Missense_Mutation p.N134S 0.18 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 16 4933734 4933734 C G PPL Missense_Mutation p.G1641A 0.22 tolerated(0.31) benign(0.097) TCGA-CG-5721-01 16 4935386 4935388 CTC - PPL In_Frame_Del p.E1090del 0.16 TCGA-CG-5721-01 16 49430466 49430466 A G C16orf78 Missense_Mutation p.D176G 0.20 deleterious(0.01) benign(0.402) TCGA-CG-5721-01 16 50112751 50112751 C T HEATR3 Missense_Mutation p.A288V 0.22 tolerated(0.05) benign(0.008) TCGA-CG-5721-01 16 50347896 50347896 G A ADCY7 Missense_Mutation p.V927M 0.19 deleterious(0) probably_damaging(0.987) TCGA-CG-5721-01 16 50659415 50659415 C T NKD1 Missense_Mutation p.S129F 0.23 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 16 50707743 50707743 G A SNX20 Silent p.R175R 0.24 TCGA-CG-5721-01 16 50783754 50783754 T C CYLD Missense_Mutation p.Y49H 0.22 tolerated_low_confidence(0.41) benign(0.145) TCGA-CG-5721-01 16 50788337 50788337 T C CYLD Splice_Site p.X305_splice 0.24 TCGA-CG-5721-01 16 5094420 5094420 T C C16orf89 3'UTR 0.30 TCGA-CG-5721-01 16 511444 511444 G A RAB11FIP3 Missense_Mutation p.G252D 0.17 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 16 51173803 51173803 T C SALL1 Missense_Mutation p.N777S 0.16 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 16 51174322 51174322 T C SALL1 Missense_Mutation p.N604S 0.08 tolerated(0.79) benign(0.001) TCGA-CG-5721-01 16 53190246 53190246 T C CHD9 Missense_Mutation p.V82A 0.20 probably_damaging(0.987) TCGA-CG-5721-01 16 53730184 53730184 T C RPGRIP1L Missense_Mutation p.K37E 0.16 deleterious(0.01) benign(0.066) TCGA-CG-5721-01 16 54965177 54965177 T C IRX5 Missense_Mutation p.Y23H 0.18 deleterious(0) possibly_damaging(0.903) TCGA-CG-5721-01 16 54966639 54966639 T C IRX5 Missense_Mutation p.V160A 0.21 deleterious(0) probably_damaging(0.924) TCGA-CG-5721-01 16 54967711 54967711 T C IRX5 Silent p.L460L 0.13 TCGA-CG-5721-01 16 55358882 55358882 A G IRX6 5'UTR 0.30 TCGA-CG-5721-01 16 56396397 56396397 A G AMFR 3'UTR 0.22 TCGA-CG-5721-01 16 56533690 56533690 C T BBS2 Silent p.R509R 0.20 TCGA-CG-5721-01 16 57059448 57059448 A G NLRC5 Missense_Mutation p.D198G 0.15 tolerated(0.32) benign(0.002) TCGA-CG-5721-01 16 58036471 58036471 G A USB1 Missense_Mutation p.D63N 0.18 tolerated(0.05) possibly_damaging(0.773) TCGA-CG-5721-01 16 58324986 58324986 A G PRSS54 Missense_Mutation p.L47S 0.10 deleterious(0) possibly_damaging(0.902) TCGA-CG-5721-01 16 58555205 58555205 A G CNOT1 Silent p.L2312L 0.13 TCGA-CG-5721-01 16 58559097 58559097 T C CNOT1 Missense_Mutation p.D2257G 0.19 deleterious(0.01) possibly_damaging(0.643) TCGA-CG-5721-01 16 58614646 58614646 A G CNOT1 Missense_Mutation p.S412P 0.21 deleterious(0.05) benign(0.327) TCGA-CG-5721-01 16 624580 624580 T C PIGQ Missense_Mutation p.V169A 0.50 deleterious_low_confidence(0.03) possibly_damaging(0.817) TCGA-CG-5721-01 16 66943186 66943186 G A CDH16 Silent p.G792G 0.18 TCGA-CG-5721-01 16 67315670 67315670 C T PLEKHG4 Missense_Mutation p.T312M 0.19 tolerated(0.2) benign(0.006) TCGA-CG-5721-01 16 67316187 67316187 G - PLEKHG4 Frame_Shift_Del p.G398Afs*4 0.21 TCGA-CG-5721-01 16 67320682 67320682 C T PLEKHG4 Nonsense_Mutation p.R929* 0.19 TCGA-CG-5721-01 16 67470813 67470813 A G HSD11B2 Silent p.A375A 0.18 TCGA-CG-5721-01 16 67662300 67662300 A G CTCF Missense_Mutation p.T516A 0.12 deleterious(0.05) possibly_damaging(0.823) TCGA-CG-5721-01 16 67683765 67683765 A T RLTPR Missense_Mutation p.Q659L 0.23 tolerated(0.11) benign(0.01) TCGA-CG-5721-01 16 67683871 67683871 G A RLTPR Silent p.Q694Q 0.24 TCGA-CG-5721-01 16 67694161 67694161 T C ACD Missense_Mutation p.N74S 0.14 tolerated_low_confidence(0.28) benign(0.014) TCGA-CG-5721-01 16 67697558 67697558 A G ENKD1 Splice_Site p.X248_splice 0.15 TCGA-CG-5721-01 16 67763602 67763602 A G RANBP10 Silent p.S376S 0.19 TCGA-CG-5721-01 16 67862087 67862087 G - CENPT 3'UTR 0.21 TCGA-CG-5721-01 16 67902272 67902272 A G NUTF2 Silent p.G43G 0.20 TCGA-CG-5721-01 16 67968770 67968770 C A PSMB10 Missense_Mutation p.A214S 0.21 deleterious(0) possibly_damaging(0.499) TCGA-CG-5721-01 16 67991804 67991804 A G SLC12A4 Silent p.C164C 0.10 TCGA-CG-5721-01 16 68110607 68110607 G A DUS2 Silent p.Q385Q 0.21 TCGA-CG-5721-01 16 68266489 68266489 T C ESRP2 Missense_Mutation p.N271S 0.21 deleterious(0.01) benign(0.069) TCGA-CG-5721-01 16 68373316 68373316 T C PRMT7 Missense_Mutation p.I199T 0.21 deleterious(0) benign(0.197) TCGA-CG-5721-01 16 68380154 68380154 A G PRMT7 Missense_Mutation p.T388A 0.25 deleterious(0.02) benign(0.097) TCGA-CG-5721-01 16 68405595 68405595 G A SMPD3 Missense_Mutation p.R164W 0.32 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 16 68719188 68719188 A G CDH3 Missense_Mutation p.D502G 0.09 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 16 68894252 68894252 C T TANGO6 Missense_Mutation p.A187V 0.22 tolerated(0.54) benign(0.003) TCGA-CG-5721-01 16 69008054 69008054 G A TANGO6 Missense_Mutation p.R942Q 0.21 deleterious(0) benign(0.356) TCGA-CG-5721-01 16 69385573 69385573 A G TMED6 Silent p.S28S 0.18 TCGA-CG-5721-01 16 69729043 69729043 T C NFAT5 Silent p.C1473C 0.17 TCGA-CG-5721-01 16 69752360 69752360 C T NQO1 Missense_Mutation p.A29T 0.15 tolerated(1) benign(0.011) TCGA-CG-5721-01 16 69959116 69959116 C T WWP2 Intron 0.15 TCGA-CG-5721-01 16 69971539 69971539 T A WWP2 Missense_Mutation p.I776N 0.13 deleterious(0) probably_damaging(0.967) TCGA-CG-5721-01 16 701657 701657 G A WDR90 Silent p.P250P 0.22 TCGA-CG-5721-01 16 70690978 70690978 T C IL34 Missense_Mutation p.L119P 0.18 deleterious(0) probably_damaging(0.973) TCGA-CG-5721-01 16 71127727 71127727 C T HYDIN Missense_Mutation p.C480Y 0.18 probably_damaging(0.987) TCGA-CG-5721-01 16 71218773 71218773 G A HYDIN Nonsense_Mutation p.Q86* 0.18 TCGA-CG-5721-01 16 71317627 71317627 C T CMTR2 Missense_Mutation p.G733R 0.19 tolerated(0.15) benign(0.059) TCGA-CG-5721-01 16 71609922 71609922 A G TAT Silent p.P81P 0.20 TCGA-CG-5721-01 16 71799413 71799413 A G AP1G1 Silent p.G242G 0.21 TCGA-CG-5721-01 16 72130232 72130232 G A DHX38 Missense_Mutation p.R59Q 0.12 deleterious(0.02) benign(0.016) TCGA-CG-5721-01 16 72828908 72828908 T C ZFHX3 Missense_Mutation p.N2558S 0.14 unknown(0) TCGA-CG-5721-01 16 72829585 72829585 T - ZFHX3 Frame_Shift_Del p.K2332Nfs*44 0.21 TCGA-CG-5721-01 16 72830804 72830804 C T ZFHX3 Missense_Mutation p.G1926D 0.25 benign(0.066) TCGA-CG-5721-01 16 72830903 72830904 CT - ZFHX3 Frame_Shift_Del p.R1893Gfs*35 0.24 TCGA-CG-5721-01 16 72923801 72923801 A G ZFHX3 Missense_Mutation p.C1093R 0.22 probably_damaging(0.991) TCGA-CG-5721-01 16 74706343 74706343 C T MLKL 3'UTR 0.15 TCGA-CG-5721-01 16 74752943 74752943 G - FA2H Frame_Shift_Del p.S244Afs*37 0.23 TCGA-CG-5721-01 16 75269317 75269318 - G BCAR1 Frame_Shift_Ins p.S540Lfs*2 0.38 TCGA-CG-5721-01 16 75651057 75651057 A - ADAT1 Frame_Shift_Del p.F136Sfs*36 0.19 TCGA-CG-5721-01 16 78466543 78466543 C T WWOX Missense_Mutation p.T317M 0.18 tolerated(0.2) benign(0.066) TCGA-CG-5721-01 16 81051432 81051433 - A CENPN Frame_Shift_Ins p.N118Kfs*10 0.14 TCGA-CG-5721-01 16 81078356 81078356 A G ATMIN Missense_Mutation p.I751M 0.22 tolerated(0.16) benign(0.017) TCGA-CG-5721-01 16 81161381 81161381 C T PKD1L2 RNA 0.22 TCGA-CG-5721-01 16 81411130 81411130 A G GAN Missense_Mutation p.I575V 0.20 deleterious(0.01) benign(0.371) TCGA-CG-5721-01 16 81733390 81733390 A G CMIP Missense_Mutation p.N580S 0.15 tolerated(0.19) possibly_damaging(0.874) TCGA-CG-5721-01 16 81819728 81819728 T C PLCG2 Missense_Mutation p.V45A 0.13 deleterious(0) benign(0.341) TCGA-CG-5721-01 16 825480 825480 C T MSLNL Silent p.A427A 0.16 TCGA-CG-5721-01 16 83817018 83817018 C T CDH13 Missense_Mutation p.A739V 0.06 tolerated(0.35) benign(0.392) TCGA-CG-5721-01 16 84520276 84520276 A G TLDC1 Missense_Mutation p.F307L 0.13 deleterious(0) probably_damaging(0.98) TCGA-CG-5721-01 16 84600388 84600388 G A COTL1 3'UTR 0.29 TCGA-CG-5721-01 16 84778843 84778843 G T USP10 Missense_Mutation p.Q252H 0.21 deleterious_low_confidence(0.05) benign(0.013) TCGA-CG-5721-01 16 85100588 85100588 T C KIAA0513 5'UTR 0.14 TCGA-CG-5721-01 16 85689518 85689518 G A GSE1 Silent p.A328A 0.29 TCGA-CG-5721-01 16 85813245 85813245 A G EMC8 3'UTR 0.21 TCGA-CG-5721-01 16 85954920 85954920 G A IRF8 3'UTR 0.32 TCGA-CG-5721-01 16 87678007 87678007 G A JPH3 Missense_Mutation p.A176T 0.22 tolerated(0.11) benign(0.044) TCGA-CG-5721-01 16 87678282 87678282 C T JPH3 Silent p.G267G 0.15 TCGA-CG-5721-01 16 88599263 88599263 A G ZFPM1 Missense_Mutation p.N370S 0.13 tolerated(0.53) benign(0.074) TCGA-CG-5721-01 16 88714464 88714464 A G CYBA Silent p.G39G 0.27 TCGA-CG-5721-01 16 88724403 88724403 T C MVD Missense_Mutation p.D59G 0.21 tolerated(0.21) benign(0.007) TCGA-CG-5721-01 16 88951603 88951603 G A CBFA2T3 Missense_Mutation p.P323L 0.22 deleterious(0.04) possibly_damaging(0.805) TCGA-CG-5721-01 16 89346505 89346505 C T ANKRD11 Missense_Mutation p.A2149T 0.22 benign(0.033) TCGA-CG-5721-01 16 89348369 89348369 A G ANKRD11 Silent p.D1527D 0.20 TCGA-CG-5721-01 16 89623521 89623521 C T SPG7 3'UTR 0.13 TCGA-CG-5721-01 16 89703685 89703685 C T DPEP1 Missense_Mutation p.A222V 0.18 tolerated(0.29) benign(0.066) TCGA-CG-5721-01 16 89764463 89764463 G A SPATA2L Missense_Mutation p.A185V 0.17 tolerated(0.23) benign(0.445) TCGA-CG-5721-01 16 90002087 90002087 G A TUBB3 Missense_Mutation p.E410K 0.23 deleterious_low_confidence(0) benign(0.065) TCGA-CG-5721-01 16 90095790 90095790 T C C16orf3 5'UTR 0.12 TCGA-CG-5721-01 16 90161708 90161708 T C TUBB8P7 RNA 0.13 TCGA-CG-5721-01 17 10247249 10247249 C T MYH13 Missense_Mutation p.V588M 0.21 deleterious(0) probably_damaging(0.937) TCGA-CG-5721-01 17 10263318 10263318 T C MYH13 Missense_Mutation p.T202A 0.14 tolerated(0.47) benign(0.002) TCGA-CG-5721-01 17 10303704 10303704 T C MYH8 Intron 0.22 TCGA-CG-5721-01 17 10356187 10356187 T C MYH4 Silent p.K1058K 0.20 TCGA-CG-5721-01 17 10545866 10545866 T C MYH3 Missense_Mutation p.T586A 0.14 deleterious(0.04) benign(0.019) TCGA-CG-5721-01 17 1183350 1183350 G A TUSC5 Missense_Mutation p.A19T 0.28 tolerated(0.24) benign(0.005) TCGA-CG-5721-01 17 12639545 12639545 G A MYOCD Silent p.G161G 0.16 TCGA-CG-5721-01 17 12649294 12649294 A G MYOCD Missense_Mutation p.T344A 0.15 deleterious(0.05) benign(0.131) TCGA-CG-5721-01 17 1538649 1538649 G A SCARF1 Silent p.A632A 0.09 TCGA-CG-5721-01 17 15848647 15848647 T C ADORA2B Missense_Mutation p.C29R 0.29 deleterious(0) probably_damaging(0.998) TCGA-CG-5721-01 17 15881300 15881300 G A ZSWIM7 3'UTR 0.24 TCGA-CG-5721-01 17 15989674 15989674 C T NCOR1 Silent p.P1033P 0.21 TCGA-CG-5721-01 17 16335135 16335135 A G TRPV2 Missense_Mutation p.Y542C 0.18 deleterious(0) probably_damaging(0.984) TCGA-CG-5721-01 17 16527608 16527608 T C ZNF624 Missense_Mutation p.T198A 0.20 tolerated(0.77) benign(0) TCGA-CG-5721-01 17 17168289 17168289 A G COPS3 Silent p.L150L 0.24 TCGA-CG-5721-01 17 17712704 17712704 G A RAI1 Missense_Mutation p.G1887D 0.22 tolerated(0.13) benign(0.166) TCGA-CG-5721-01 17 17721094 17721094 G - SREBF1 Frame_Shift_Del p.L471Cfs*257 0.24 TCGA-CG-5721-01 17 17764788 17764788 A G TOM1L2 Splice_Site p.X426_splice 0.26 TCGA-CG-5721-01 17 17891390 17891390 A G LRRC48 Missense_Mutation p.N141S 0.15 deleterious(0) possibly_damaging(0.75) TCGA-CG-5721-01 17 17898317 17898317 C T LRRC48 Missense_Mutation p.A239V 0.28 deleterious(0) probably_damaging(0.985) TCGA-CG-5721-01 17 18005257 18005257 T C DRG2 Missense_Mutation p.I251T 0.23 deleterious(0.02) benign(0.013) TCGA-CG-5721-01 17 18010553 18010553 A G DRG2 Silent p.%3D 0.13 TCGA-CG-5721-01 17 18030391 18030392 GA - MYO15A Frame_Shift_Del p.S1317Rfs*6 0.18 TCGA-CG-5721-01 17 18043900 18043900 G A MYO15A Missense_Mutation p.V1761I 0.21 unknown(0) TCGA-CG-5721-01 17 18148506 18148506 G A FLII Silent p.H1252H 0.25 TCGA-CG-5721-01 17 18181368 18181368 G A TOP3A Silent p.G816G 0.20 TCGA-CG-5721-01 17 1840972 1840972 G A RTN4RL1 Silent p.I48I 0.20 TCGA-CG-5721-01 17 1841027 1841027 A G RTN4RL1 Missense_Mutation p.V30A 0.16 deleterious(0) possibly_damaging(0.788) TCGA-CG-5721-01 17 18673283 18673283 G A FBXW10 Missense_Mutation p.A631T 0.19 deleterious(0) possibly_damaging(0.803) TCGA-CG-5721-01 17 18682092 18682092 A G FBXW10 Silent p.K880K 0.15 TCGA-CG-5721-01 17 18907282 18907282 A G FAM83G Missense_Mutation p.F25L 0.23 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 17 19284578 19284578 T C MAPK7 Silent p.D352D 0.18 TCGA-CG-5721-01 17 2076067 2076067 T C SMG6 Missense_Mutation p.D1081G 0.19 deleterious(0.03) probably_damaging(0.95) TCGA-CG-5721-01 17 21147535 21147535 A C C17orf103 Missense_Mutation p.C36G 0.09 tolerated(0.42) benign(0.009) TCGA-CG-5721-01 17 21731489 21731489 C - UBBP4 Frame_Shift_Del p.D191Ifs*35 0.22 TCGA-CG-5721-01 17 2579802 2579802 A - PAFAH1B1 Frame_Shift_Del p.S304Vfs*29 0.20 TCGA-CG-5721-01 17 2604947 2604947 C T CLUH Missense_Mutation p.R197Q 0.27 deleterious(0.05) possibly_damaging(0.617) TCGA-CG-5721-01 17 26671585 26671585 G A TNFAIP1 Missense_Mutation p.D304N 0.30 deleterious_low_confidence(0.05) benign(0.035) TCGA-CG-5721-01 17 26695960 26695960 G A VTN Silent p.N253N 0.19 TCGA-CG-5721-01 17 26697198 26697198 T C VTN Missense_Mutation p.I9M 0.16 tolerated(1) unknown(0) TCGA-CG-5721-01 17 26723070 26723070 G - SARM1 Intron 0.16 TCGA-CG-5721-01 17 26900951 26900951 T C ALDOC Silent p.G267G 0.17 TCGA-CG-5721-01 17 26962262 26962262 A G KIAA0100 Silent p.S781S 0.18 TCGA-CG-5721-01 17 27011678 27011678 C T SUPT6H Silent p.D768D 0.15 TCGA-CG-5721-01 17 27014226 27014226 A G SUPT6H Missense_Mutation p.K941E 0.20 deleterious(0.01) benign(0.254) TCGA-CG-5721-01 17 27016471 27016471 A G SUPT6H Silent p.E1078E 0.17 TCGA-CG-5721-01 17 27028730 27028730 T C SUPT6H 3'UTR 0.18 TCGA-CG-5721-01 17 27208887 27208887 G A FLOT2 Missense_Mutation p.R287C 0.23 deleterious(0) possibly_damaging(0.816) TCGA-CG-5721-01 17 27400961 27400961 T C TIAF1 Missense_Mutation p.Q86R 0.17 tolerated_low_confidence(0.05) benign(0.145) TCGA-CG-5721-01 17 27425890 27425890 G A MYO18A Missense_Mutation p.P1245L 0.23 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 17 27581470 27581470 T C CRYBA1 3'UTR 0.21 TCGA-CG-5721-01 17 27802738 27802738 T C TAOK1 Silent p.H85H 0.15 TCGA-CG-5721-01 17 28417508 28417508 A G EFCAB5 Missense_Mutation p.I1251M 0.16 tolerated(0.07) possibly_damaging(0.527) TCGA-CG-5721-01 17 28542674 28542674 A G SLC6A4 Missense_Mutation p.L344P 0.12 deleterious(0) probably_damaging(0.997) TCGA-CG-5721-01 17 28545342 28545342 G T SLC6A4 Silent p.A164A 0.20 TCGA-CG-5721-01 17 28804459 28804459 C T GOSR1 Missense_Mutation p.A3V 0.16 tolerated(0.19) benign(0.008) TCGA-CG-5721-01 17 28849526 28849526 T C GOSR1 3'UTR 0.15 TCGA-CG-5721-01 17 29185289 29185289 A - ATAD5 Frame_Shift_Del p.K970Nfs*32 0.15 TCGA-CG-5721-01 17 29231314 29231314 G A TEFM Nonsense_Mutation p.R89* 0.22 TCGA-CG-5721-01 17 29550514 29550514 A G NF1 Missense_Mutation p.S592G 0.22 deleterious(0.04) benign(0.015) TCGA-CG-5721-01 17 29559874 29559874 A G NF1 Silent p.V1157V 0.12 TCGA-CG-5721-01 17 29701123 29701123 C T NF1 Nonsense_Mutation p.Q2824* 0.19 TCGA-CG-5721-01 17 2996177 2996177 C T OR1D2 Silent p.T38T 0.19 TCGA-CG-5721-01 17 30190399 30190399 C T UTP6 Missense_Mutation p.M591I 0.19 deleterious(0.01) benign(0.027) TCGA-CG-5721-01 17 30536447 30536447 C A RHOT1 Silent p.V606V 0.16 TCGA-CG-5721-01 17 30986329 30986329 G A MYO1D Missense_Mutation p.R717W 0.15 deleterious(0.04) benign(0.07) TCGA-CG-5721-01 17 3101155 3101155 T C OR1A2 Silent p.L115L 0.19 TCGA-CG-5721-01 17 31260324 31260324 G A TMEM98 Splice_Site p.X88_splice 0.17 TCGA-CG-5721-01 17 31438937 31438937 G A ASIC2 Missense_Mutation p.T286I 0.16 deleterious(0) benign(0.272) TCGA-CG-5721-01 17 3301298 3301298 A G OR1E1 Missense_Mutation p.M136T 0.22 deleterious(0) benign(0.128) TCGA-CG-5721-01 17 33289803 33289803 A G ZNF830 3'UTR 0.14 TCGA-CG-5721-01 17 33448908 33448908 A G FNDC8 Missense_Mutation p.T66A 0.27 tolerated_low_confidence(0.18) benign(0.003) TCGA-CG-5721-01 17 33467011 33467011 G T NLE1 Silent p.S79S 0.11 TCGA-CG-5721-01 17 33680769 33680769 C - SLFN11 Frame_Shift_Del p.G503Afs*15 0.11 TCGA-CG-5721-01 17 33738930 33738930 T C SLFN12 Missense_Mutation p.I388M 0.20 tolerated(0.23) benign(0.01) TCGA-CG-5721-01 17 33768197 33768197 T C SLFN13 Missense_Mutation p.Y704C 0.20 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 17 33770835 33770835 C T SLFN13 Missense_Mutation p.A391T 0.14 tolerated(0.25) benign(0.201) TCGA-CG-5721-01 17 34236486 34236486 T C AC015849.16 RNA 0.18 TCGA-CG-5721-01 17 3424299 3424299 A G TRPV3 Missense_Mutation p.V593A 0.20 deleterious(0.01) probably_damaging(0.982) TCGA-CG-5721-01 17 34499221 34499221 C T TBC1D3B Missense_Mutation p.G164R 0.06 tolerated(0.05) probably_damaging(0.993) TCGA-CG-5721-01 17 34854407 34854407 A - MYO19 Intron 0.18 TCGA-CG-5721-01 17 35300474 35300474 A G LHX1 3'UTR 0.17 TCGA-CG-5721-01 17 35550328 35550328 C T ACACA Missense_Mutation p.R1396Q 0.24 deleterious(0) probably_damaging(0.996) TCGA-CG-5721-01 17 3583033 3583033 C - P2RX5 Frame_Shift_Del p.L371Wfs*106 0.16 TCGA-CG-5721-01 17 35880674 35880674 T A SYNRG Silent p.G1248G 0.21 TCGA-CG-5721-01 17 35902351 35902351 A G SYNRG Silent p.S975S 0.18 TCGA-CG-5721-01 17 36357204 36357204 A G RP11-1407O15.2 Missense_Mutation p.V350A 0.08 TCGA-CG-5721-01 17 36483989 36483989 C A GPR179 Missense_Mutation p.E1821D 0.17 tolerated(0.18) benign(0.059) TCGA-CG-5721-01 17 36864113 36864113 T C MLLT6 Silent p.D114D 0.22 TCGA-CG-5721-01 17 37420479 37420479 T C FBXL20 Missense_Mutation p.I384M 0.24 deleterious(0) possibly_damaging(0.66) TCGA-CG-5721-01 17 37627217 37627217 C T CDK12 Missense_Mutation p.R378C 0.18 unknown(0) TCGA-CG-5721-01 17 37826227 37826227 G A PNMT Missense_Mutation p.R145H 0.29 tolerated(0.06) benign(0.005) TCGA-CG-5721-01 17 38179049 38179049 T C MED24 Missense_Mutation p.T761A 0.12 tolerated(0.62) benign(0) TCGA-CG-5721-01 17 38240097 38240097 C T THRA Missense_Mutation p.R78C 0.15 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 17 38345469 38345469 G A RAPGEFL1 Missense_Mutation p.R113H 0.18 deleterious(0) possibly_damaging(0.838) TCGA-CG-5721-01 17 3839611 3839611 C T ATP2A3 Missense_Mutation p.R825Q 0.20 tolerated(0.11) benign(0.024) TCGA-CG-5721-01 17 3850769 3850769 C T ATP2A3 Silent p.P337P 0.28 TCGA-CG-5721-01 17 38573080 38573083 ACAG - TOP2A Frame_Shift_Del p.S29Lfs*27 0.22 TCGA-CG-5721-01 17 38798685 38798685 C A SMARCE1 Intron 0.17 TCGA-CG-5721-01 17 38904579 38904579 T C KRT25 Missense_Mutation p.I435V 0.21 tolerated(1) benign(0) TCGA-CG-5721-01 17 38933833 38933833 A G KRT27 Missense_Mutation p.L375P 0.23 deleterious(0) probably_damaging(0.98) TCGA-CG-5721-01 17 38953472 38953472 G A KRT28 Missense_Mutation p.P251L 0.24 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 17 38955785 38955785 A G KRT28 Missense_Mutation p.W121R 0.14 deleterious(0.01) probably_damaging(1) TCGA-CG-5721-01 17 39019476 39019476 T A KRT12 Silent p.A405A 0.24 TCGA-CG-5721-01 17 39081783 39081783 T C KRT23 Missense_Mutation p.Y322C 0.05 deleterious(0) benign(0.144) TCGA-CG-5721-01 17 39394461 39394461 A G KRTAP9-8 Missense_Mutation p.Q53R 0.14 tolerated(0.44) unknown(0) TCGA-CG-5721-01 17 39504875 39504875 A G KRT33A Missense_Mutation p.S150P 0.20 deleterious(0) benign(0.072) TCGA-CG-5721-01 17 39538519 39538519 A - KRT34 Frame_Shift_Del p.S36Pfs*48 0.19 TCGA-CG-5721-01 17 39616434 39616434 G A KRT32 Silent p.C425C 0.12 TCGA-CG-5721-01 17 39622129 39622129 G T KRT32 Missense_Mutation p.L202M 0.16 tolerated(0.05) probably_damaging(0.955) TCGA-CG-5721-01 17 39661386 39661386 C T KRT13 Nonsense_Mutation p.W139* 0.14 TCGA-CG-5721-01 17 39883656 39883656 T C HAP1 Intron 0.12 TCGA-CG-5721-01 17 39913734 39913734 T C JUP Missense_Mutation p.Y660C 0.18 deleterious(0) benign(0.222) TCGA-CG-5721-01 17 39973321 39973321 A G FKBP10 Missense_Mutation p.N86S 0.14 tolerated(0.13) benign(0.001) TCGA-CG-5721-01 17 39973411 39973411 G A FKBP10 Missense_Mutation p.R116H 0.20 tolerated(0.62) benign(0.013) TCGA-CG-5721-01 17 40021263 40021263 A G KLHL11 Missense_Mutation p.Y121H 0.24 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 17 40070067 40070067 A G ACLY Silent p.C20C 0.18 TCGA-CG-5721-01 17 40263478 40263478 C T DHX58 Missense_Mutation p.R69H 0.16 tolerated(0.17) benign(0.014) TCGA-CG-5721-01 17 4053313 4053314 TA - CYB5D2 Frame_Shift_Del p.Y127Cfs*82 0.17 TCGA-CG-5721-01 17 40726185 40726185 T C PSMC3IP Missense_Mutation p.D90G 0.21 deleterious(0) probably_damaging(0.933) TCGA-CG-5721-01 17 40817819 40817819 T C TUBG2 Missense_Mutation p.Y273H 0.20 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 17 40821468 40821468 G A PLEKHH3 Missense_Mutation p.L729F 0.28 tolerated(0.09) probably_damaging(0.914) TCGA-CG-5721-01 17 40844011 40844011 T C CNTNAP1 Splice_Site p.X844_splice 0.19 TCGA-CG-5721-01 17 40914371 40914372 - G RAMP2 Splice_Site p.X56_splice 0.17 TCGA-CG-5721-01 17 40947729 40947730 - CT WNK4 Frame_Shift_Ins p.G1040Lfs*65 0.19 TCGA-CG-5721-01 17 40997488 40997488 T C AOC2 Missense_Mutation p.V282A 0.20 tolerated(0.06) benign(0.016) TCGA-CG-5721-01 17 4111302 4111302 A G ANKFY1 Missense_Mutation p.Y262H 0.19 tolerated(0.13) benign(0.018) TCGA-CG-5721-01 17 41165193 41165193 A G IFI35 Missense_Mutation p.T84A 0.25 deleterious(0) probably_damaging(0.926) TCGA-CG-5721-01 17 41846917 41846917 G A DUSP3 3'UTR 0.29 TCGA-CG-5721-01 17 41907449 41907449 G A MPP3 Silent p.S83S 0.17 TCGA-CG-5721-01 17 42266347 42266347 A G TMUB2 Intron 0.18 TCGA-CG-5721-01 17 42271691 42271691 C G ATXN7L3 Missense_Mutation p.K335N 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.447) TCGA-CG-5721-01 17 42334882 42334882 C T SLC4A1 Missense_Mutation p.V488M 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-CG-5721-01 17 42397576 42397576 C T SLC25A39 Missense_Mutation p.G318R 0.20 deleterious(0) probably_damaging(0.997) TCGA-CG-5721-01 17 42457166 42457166 C T ITGA2B Missense_Mutation p.R590Q 0.19 deleterious(0.01) possibly_damaging(0.861) TCGA-CG-5721-01 17 42476888 42476888 G A GPATCH8 Missense_Mutation p.R853C 0.22 tolerated_low_confidence(0.15) unknown(0) TCGA-CG-5721-01 17 42477017 42477017 G A GPATCH8 Missense_Mutation p.R810W 0.27 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-CG-5721-01 17 42745051 42745051 A G C17orf104 Missense_Mutation p.N591S 0.20 tolerated(0.28) benign(0.011) TCGA-CG-5721-01 17 42940176 42940176 C T EFTUD2 Silent p.G504G 0.15 TCGA-CG-5721-01 17 43227060 43227060 A G HEXIM1 Missense_Mutation p.Y168C 0.22 tolerated(0.1) benign(0.007) TCGA-CG-5721-01 17 43246699 43246699 C T HEXIM2 Silent p.R128R 0.13 TCGA-CG-5721-01 17 44039745 44039745 C T MAPT Silent p.H14H 0.08 TCGA-CG-5721-01 17 4462881 4462881 G C GGT6 Nonsense_Mutation p.Y105* 0.25 TCGA-CG-5721-01 17 44845745 44845745 A G WNT3 Missense_Mutation p.C337R 0.20 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 17 45199935 45199935 G A CDC27 Missense_Mutation p.A762V 0.19 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 17 45425174 45425174 C T EFCAB13 Missense_Mutation p.A173V 0.17 tolerated(0.06) possibly_damaging(0.9) TCGA-CG-5721-01 17 45451978 45451978 A - EFCAB13 Frame_Shift_Del p.S342Afs*25 0.24 TCGA-CG-5721-01 17 45897450 45897450 A G OSBPL7 Missense_Mutation p.W30R 0.09 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 17 45906036 45906036 C T MRPL10 Missense_Mutation p.G28D 0.18 deleterious(0) possibly_damaging(0.894) TCGA-CG-5721-01 17 45917722 45917722 A G SCRN2 Missense_Mutation p.V64A 0.16 deleterious(0) possibly_damaging(0.852) TCGA-CG-5721-01 17 46058547 46058547 T C CDK5RAP3 Silent p.T434T 0.23 TCGA-CG-5721-01 17 46621965 46621965 G A HOXB2 Silent p.S103S 0.33 TCGA-CG-5721-01 17 46703687 46703687 C T HOXB9 5'UTR 0.22 TCGA-CG-5721-01 17 46805884 46805884 C - HOXB13 Frame_Shift_Del p.R25Gfs*9 0.30 TCGA-CG-5721-01 17 4685894 4685894 T G TM4SF5 Missense_Mutation p.L119V 0.16 tolerated(0.33) benign(0.076) TCGA-CG-5721-01 17 47022068 47022068 G A SNF8 Missense_Mutation p.A10V 0.19 deleterious(0) benign(0.247) TCGA-CG-5721-01 17 47394489 47394489 G A ZNF652 Missense_Mutation p.A200V 0.18 tolerated(0.21) benign(0.143) TCGA-CG-5721-01 17 47677659 47677659 C T SPOP 3'UTR 0.23 TCGA-CG-5721-01 17 47781497 47781497 T C SLC35B1 Missense_Mutation p.N207S 0.17 tolerated(0.35) benign(0.035) TCGA-CG-5721-01 17 4796762 4796762 G A MINK1 Missense_Mutation p.E812K 0.15 tolerated(0.1) benign(0.358) TCGA-CG-5721-01 17 48046789 48046789 A G DLX4 5'UTR 0.14 TCGA-CG-5721-01 17 48050389 48050389 C T DLX4 Intron 0.10 TCGA-CG-5721-01 17 48158769 48158769 G A ITGA3 Silent p.T972T 0.48 TCGA-CG-5721-01 17 48462559 48462559 C T LRRC59 Missense_Mutation p.R199Q 0.24 tolerated(0.11) probably_damaging(0.992) TCGA-CG-5721-01 17 48559747 48559747 A G RSAD1 Missense_Mutation p.Y257C 0.14 deleterious(0) probably_damaging(0.997) TCGA-CG-5721-01 17 48746229 48746229 T C ABCC3 Missense_Mutation p.I629T 0.18 deleterious(0.01) possibly_damaging(0.461) TCGA-CG-5721-01 17 48765057 48765057 G A ABCC3 Missense_Mutation p.A1481T 0.24 tolerated(0.06) benign(0.337) TCGA-CG-5721-01 17 48917518 48917518 G A WFIKKN2 Missense_Mutation p.R290Q 0.20 tolerated(0.17) benign(0.007) TCGA-CG-5721-01 17 4905794 4905794 A C KIF1C Silent p.R155R 0.20 TCGA-CG-5721-01 17 49074005 49074005 C T SPAG9 Missense_Mutation p.R630H 0.16 deleterious(0) possibly_damaging(0.84) TCGA-CG-5721-01 17 49245649 49245649 G A NME1-NME2 Missense_Mutation p.R173Q 0.17 deleterious(0.04) benign(0.102) TCGA-CG-5721-01 17 4927012 4927012 G A KIF1C Missense_Mutation p.G960R 0.23 tolerated_low_confidence(0.36) benign(0) TCGA-CG-5721-01 17 4927266 4927266 T C KIF1C Silent p.G1044G 0.20 TCGA-CG-5721-01 17 49284306 49284306 T C MBTD1 Missense_Mutation p.T183A 0.20 tolerated(0.06) benign(0.006) TCGA-CG-5721-01 17 5114221 5114221 C T SCIMP Missense_Mutation p.A105T 0.19 tolerated_low_confidence(0.1) benign(0.156) TCGA-CG-5721-01 17 51900667 51900667 G A KIF2B Silent p.P91P 0.20 TCGA-CG-5721-01 17 51902014 51902014 A - KIF2B Frame_Shift_Del p.K542Nfs*2 0.16 TCGA-CG-5721-01 17 5253788 5253788 T C RABEP1 Missense_Mutation p.L276S 0.22 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 17 5264841 5264841 G A RABEP1 Silent p.A478A 0.21 TCGA-CG-5721-01 17 53040136 53040136 T C COX11 Silent p.E263E 0.19 TCGA-CG-5721-01 17 53040138 53040139 - A COX11 Frame_Shift_Ins p.E263* 0.27 TCGA-CG-5721-01 17 53078195 53078195 A G STXBP4 Silent p.V175V 0.18 TCGA-CG-5721-01 17 54912353 54912353 A G DGKE Missense_Mutation p.D66G 0.20 deleterious(0.02) benign(0.083) TCGA-CG-5721-01 17 54981735 54981735 C T TRIM25 Missense_Mutation p.V270I 0.21 tolerated(0.07) benign(0.216) TCGA-CG-5721-01 17 56291683 56291683 T C MKS1 Missense_Mutation p.N194S 0.12 tolerated(0.44) benign(0.002) TCGA-CG-5721-01 17 56385040 56385040 C T BZRAP1 Missense_Mutation p.V1639M 0.24 deleterious(0.01) benign(0.305) TCGA-CG-5721-01 17 56676460 56676460 C A TEX14 Missense_Mutation p.R755M 0.21 tolerated(0.25) possibly_damaging(0.765) TCGA-CG-5721-01 17 57057738 57057738 C A PPM1E Silent p.A538A 0.24 TCGA-CG-5721-01 17 57759679 57759679 G A CLTC Missense_Mutation p.A1164T 0.19 tolerated(0.23) benign(0.282) TCGA-CG-5721-01 17 57775295 57775295 A G PTRH2 Silent p.S15S 0.22 TCGA-CG-5721-01 17 58137347 58137347 G A HEATR6 Silent p.S509S 0.16 TCGA-CG-5721-01 17 58234823 58234823 G A CA4 Missense_Mutation p.G102R 0.21 deleterious(0) probably_damaging(0.996) TCGA-CG-5721-01 17 58286039 58286039 T C USP32 Missense_Mutation p.S917G 0.19 deleterious(0.02) probably_damaging(0.977) TCGA-CG-5721-01 17 58297062 58297062 C T USP32 Silent p.R612R 0.16 TCGA-CG-5721-01 17 58734051 58734051 C T PPM1D Missense_Mutation p.A370V 0.20 tolerated(0.62) benign(0.085) TCGA-CG-5721-01 17 59479272 59479272 A G TBX2 Missense_Mutation p.K208R 0.24 deleterious(0) probably_damaging(0.98) TCGA-CG-5721-01 17 59560530 59560530 G A TBX4 Missense_Mutation p.V431M 0.29 tolerated(0.12) benign(0.075) TCGA-CG-5721-01 17 59861749 59861749 T - BRIP1 Frame_Shift_Del p.I504Sfs*22 0.22 TCGA-CG-5721-01 17 60033126 60033126 A G MED13 Silent p.C1899C 0.17 TCGA-CG-5721-01 17 60072676 60072676 T C MED13 Missense_Mutation p.Q673R 0.18 tolerated(0.55) benign(0.008) TCGA-CG-5721-01 17 60814662 60814662 A G MARCH10 Silent p.C189C 0.21 TCGA-CG-5721-01 17 61573878 61573878 G A ACE Splice_Site p.X1168_splice 0.19 TCGA-CG-5721-01 17 61770979 61770979 G A MAP3K3 Missense_Mutation p.A606T 0.16 deleterious(0) probably_damaging(0.991) TCGA-CG-5721-01 17 61781717 61781717 G A STRADA Missense_Mutation p.R362C 0.29 tolerated(0.06) benign(0.243) TCGA-CG-5721-01 17 62018253 62018253 C T SCN4A Missense_Mutation p.E1797K 0.21 tolerated_low_confidence(0.73) benign(0) TCGA-CG-5721-01 17 62825308 62825308 T C RNU7-115P 5'Flank 0.17 TCGA-CG-5721-01 17 62856350 62856350 T A LRRC37A3 Missense_Mutation p.Y1305F 0.20 deleterious(0) probably_damaging(0.953) TCGA-CG-5721-01 17 63221143 63221143 C T RGS9 Silent p.S477S 0.25 TCGA-CG-5721-01 17 6498335 6498335 G A KIAA0753 Silent p.I799I 0.24 TCGA-CG-5721-01 17 65124796 65124796 T C HELZ Missense_Mutation p.T1120A 0.18 tolerated(0.61) benign(0.003) TCGA-CG-5721-01 17 65124955 65124955 A G HELZ Missense_Mutation p.F1067L 0.14 deleterious(0) probably_damaging(0.965) TCGA-CG-5721-01 17 65184543 65184543 C T HELZ Missense_Mutation p.A352T 0.21 tolerated(0.22) benign(0.131) TCGA-CG-5721-01 17 65362568 65362568 G A PSMD12 Missense_Mutation p.T23M 0.25 tolerated(0.09) benign(0.078) TCGA-CG-5721-01 17 65720235 65720235 G A NOL11 Missense_Mutation p.G197E 0.05 tolerated(0.74) benign(0.04) TCGA-CG-5721-01 17 65889599 65889599 C T BPTF Silent p.R723R 0.19 TCGA-CG-5721-01 17 6606404 6606404 G A SLC13A5 Missense_Mutation p.R201W 0.25 deleterious(0.04) benign(0.001) TCGA-CG-5721-01 17 663379 663379 A G GLOD4 3'UTR 0.19 TCGA-CG-5721-01 17 66416706 66416706 T C ARSG 3'UTR 0.20 TCGA-CG-5721-01 17 66526419 66526419 T C PRKAR1A Silent p.G325G 0.20 TCGA-CG-5721-01 17 66538220 66538220 A G FAM20A Missense_Mutation p.S339P 0.17 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 17 6661451 6661451 T C XAF1 Missense_Mutation p.Y26H 0.17 tolerated(1) benign(0.001) TCGA-CG-5721-01 17 66925370 66925370 A G ABCA8 Silent p.A315A 0.18 TCGA-CG-5721-01 17 67150037 67150037 C A ABCA10 Missense_Mutation p.E1300D 0.18 tolerated(0.06) benign(0.327) TCGA-CG-5721-01 17 67178813 67178813 T A ABCA10 Intron 0.21 TCGA-CG-5721-01 17 67215708 67215708 C T ABCA10 Missense_Mutation p.G170S 0.04 deleterious(0) probably_damaging(0.994) TCGA-CG-5721-01 17 7096856 7096856 C T DLG4 Missense_Mutation p.A590T 0.19 deleterious(0) benign(0.443) TCGA-CG-5721-01 17 7147467 7147467 C - CTDNEP1 3'UTR 0.27 TCGA-CG-5721-01 17 7214949 7214949 T C EIF5A Missense_Mutation p.M182T 0.21 tolerated(0.08) benign(0.045) TCGA-CG-5721-01 17 72363628 72363628 T A GPR142 5'UTR 0.29 TCGA-CG-5721-01 17 72428192 72428192 C T GPRC5C Silent p.G5G 0.19 TCGA-CG-5721-01 17 7259720 7259720 A G TMEM95 Missense_Mutation p.D148G 0.20 deleterious(0.01) possibly_damaging(0.728) TCGA-CG-5721-01 17 72691997 72691997 A G CD300LF Missense_Mutation p.V195A 0.30 tolerated(0.21) benign(0.026) TCGA-CG-5721-01 17 72832138 72832138 C T TMEM104 Missense_Mutation p.A268V 0.19 tolerated(0.13) possibly_damaging(0.649) TCGA-CG-5721-01 17 72832395 72832395 C T TMEM104 Missense_Mutation p.R354C 0.14 deleterious(0) benign(0.022) TCGA-CG-5721-01 17 72860346 72860346 C T FDXR Missense_Mutation p.R352Q 0.30 deleterious(0) possibly_damaging(0.606) TCGA-CG-5721-01 17 72959143 72959143 G A HID1 Silent p.L141L 0.47 TCGA-CG-5721-01 17 7296194 7296194 G A TMEM256-PLSCR3 Silent p.S195S 0.17 TCGA-CG-5721-01 17 73096719 73096720 GT - SLC16A5 Frame_Shift_Del p.A323Gfs*4 0.22 TCGA-CG-5721-01 17 73626707 73626707 G A RECQL5 Silent p.T570T 0.15 TCGA-CG-5721-01 17 73646745 73646745 A G RECQL5 Intron 0.08 TCGA-CG-5721-01 17 7365207 7365207 G - ZBTB4 3'UTR 0.15 TCGA-CG-5721-01 17 73745107 73745107 C A ITGB4 Silent p.T1099T 0.28 TCGA-CG-5721-01 17 73748559 73748559 G A ITGB4 Missense_Mutation p.A1337T 0.18 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CG-5721-01 17 73871509 73871509 A G TRIM47 Silent p.S416S 0.15 TCGA-CG-5721-01 17 74010507 74010509 CTT - EVPL In_Frame_Del p.K791del 0.22 TCGA-CG-5721-01 17 7406583 7406583 G T POLR2A Missense_Mutation p.R967M 0.15 probably_damaging(1) TCGA-CG-5721-01 17 74097856 74097856 C T EXOC7 Missense_Mutation p.R72Q 0.24 deleterious(0.01) possibly_damaging(0.716) TCGA-CG-5721-01 17 74134076 74134076 G A FOXJ1 Silent p.G208G 0.31 TCGA-CG-5721-01 17 74154490 74154490 A G RNF157 Missense_Mutation p.V466A 0.16 tolerated_low_confidence(1) benign(0) TCGA-CG-5721-01 17 74158016 74158016 G A RNF157 Missense_Mutation p.T287I 0.07 deleterious(0.01) possibly_damaging(0.842) TCGA-CG-5721-01 17 7417203 7417203 T C POLR2A Missense_Mutation p.Y1874H 0.18 benign(0.126) TCGA-CG-5721-01 17 74344633 74344633 A G PRPSAP1 Missense_Mutation p.V67A 0.12 tolerated(0.52) benign(0.007) TCGA-CG-5721-01 17 74392545 74392545 T G UBE2O Missense_Mutation p.K825Q 0.21 deleterious(0.02) probably_damaging(0.991) TCGA-CG-5721-01 17 7467048 7467048 C - SENP3 Frame_Shift_Del p.M221Wfs*94 0.20 TCGA-CG-5721-01 17 74714908 74714908 T C JMJD6 Missense_Mutation p.H372R 0.17 tolerated(0.21) benign(0.001) TCGA-CG-5721-01 17 74737081 74737081 T C MFSD11 Silent p.I65I 0.23 TCGA-CG-5721-01 17 75085421 75085421 C T SEC14L1 Intron 0.22 TCGA-CG-5721-01 17 75205464 75205464 A G SEC14L1 Missense_Mutation p.Y506C 0.10 deleterious(0.02) probably_damaging(1) TCGA-CG-5721-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.21 deleterious(0) probably_damaging(0.998) TCGA-CG-5721-01 17 7578407 7578407 G A TP53 Missense_Mutation p.R175C 0.26 deleterious(0) probably_damaging(0.993) TCGA-CG-5721-01 17 7578419 7578419 C T TP53 Missense_Mutation p.E171K 0.17 deleterious(0.03) possibly_damaging(0.738) TCGA-CG-5721-01 17 7591938 7591938 G A WRAP53 5'UTR 0.23 TCGA-CG-5721-01 17 76089187 76089187 A G TNRC6C Missense_Mutation p.S1379G 0.15 deleterious(0) benign(0.037) TCGA-CG-5721-01 17 7636499 7636499 G A DNAH2 Missense_Mutation p.G165D 0.23 benign(0.033) TCGA-CG-5721-01 17 7644171 7644171 T C DNAH2 Missense_Mutation p.M517T 0.22 benign(0.004) TCGA-CG-5721-01 17 7646246 7646246 T C DNAH2 Missense_Mutation p.C564R 0.14 benign(0.222) TCGA-CG-5721-01 17 76510904 76510904 G T DNAH17 Missense_Mutation p.N1351K 0.22 probably_damaging(0.955) TCGA-CG-5721-01 17 76570976 76570976 G A DNAH17 Missense_Mutation p.T55M 0.21 possibly_damaging(0.555) TCGA-CG-5721-01 17 76803062 76803062 T - USP36 Frame_Shift_Del p.K688Nfs*35 0.13 TCGA-CG-5721-01 17 7721664 7721664 G A DNAH2 Silent p.E3474E 0.16 TCGA-CG-5721-01 17 7748989 7748989 C T KDM6B Silent p.S39S 0.20 TCGA-CG-5721-01 17 77809108 77809108 C T CBX4 Silent p.A111A 0.25 TCGA-CG-5721-01 17 78063612 78063612 C T CCDC40 Missense_Mutation p.R921C 0.12 deleterious(0.03) possibly_damaging(0.829) TCGA-CG-5721-01 17 78111203 78111203 T A EIF4A3 Missense_Mutation p.E322V 0.15 deleterious(0) possibly_damaging(0.505) TCGA-CG-5721-01 17 78327287 78327287 G A RNF213 Intron 0.23 TCGA-CG-5721-01 17 78336981 78336981 C A RNF213 Missense_Mutation p.P3812Q 0.18 probably_damaging(0.976) TCGA-CG-5721-01 17 7834014 7834014 C T TRAPPC1 Silent p.P116P 0.19 TCGA-CG-5721-01 17 78345686 78345686 A G RNF213 Silent p.V4146V 0.20 TCGA-CG-5721-01 17 78899241 78899241 C T RPTOR Silent p.C960C 0.15 TCGA-CG-5721-01 17 79514735 79514735 G - C17orf70 Intron 0.26 TCGA-CG-5721-01 17 79620296 79620296 T C PDE6G Missense_Mutation p.T14A 0.19 tolerated_low_confidence(0.1) probably_damaging(0.973) TCGA-CG-5721-01 17 79857828 79857828 T C ANAPC11 Missense_Mutation p.V148A 0.15 deleterious_low_confidence(0) possibly_damaging(0.728) TCGA-CG-5721-01 17 79867402 79867402 C T PCYT2 Missense_Mutation p.V56M 0.21 deleterious(0) probably_damaging(0.988) TCGA-CG-5721-01 17 79872167 79872167 T C SIRT7 Intron 0.21 TCGA-CG-5721-01 17 79968697 79968697 T C ASPSCR1 Missense_Mutation p.F397S 0.21 deleterious(0) probably_damaging(0.982) TCGA-CG-5721-01 17 79973078 79973078 T - ASPSCR1 Frame_Shift_Del p.W496Gfs*134 0.22 TCGA-CG-5721-01 17 80159721 80159721 C T CCDC57 Missense_Mutation p.A34T 0.19 tolerated(0.62) benign(0.108) TCGA-CG-5721-01 17 80274701 80274701 G A CD7 Missense_Mutation p.T80M 0.17 deleterious(0) possibly_damaging(0.856) TCGA-CG-5721-01 17 80402337 80402337 G A C17orf62 Silent p.V143V 0.19 TCGA-CG-5721-01 17 80699241 80699241 C T FN3K Missense_Mutation p.T147M 0.17 tolerated(0.06) benign(0.228) TCGA-CG-5721-01 17 8077761 8077761 G T TMEM107 Intron 0.21 TCGA-CG-5721-01 17 80915107 80915107 C T B3GNTL1 Missense_Mutation p.V294M 0.10 deleterious(0) probably_damaging(0.962) TCGA-CG-5721-01 17 8136238 8136238 T C CTC1 Missense_Mutation p.D644G 0.22 deleterious(0.02) probably_damaging(0.937) TCGA-CG-5721-01 17 8167809 8167809 C - PFAS Frame_Shift_Del p.M649Cfs*11 0.21 TCGA-CG-5721-01 17 8222131 8222131 T C ARHGEF15 Missense_Mutation p.C646R 0.13 tolerated(0.36) possibly_damaging(0.584) TCGA-CG-5721-01 17 8384695 8384695 C T MYH10 Missense_Mutation p.A1737T 0.19 possibly_damaging(0.599) TCGA-CG-5721-01 17 8738627 8738627 T C PIK3R6 Missense_Mutation p.E203G 0.24 deleterious(0.03) benign(0.009) TCGA-CG-5721-01 17 8784052 8784052 T C PIK3R5 Silent p.P849P 0.21 TCGA-CG-5721-01 17 8794162 8794162 T C PIK3R5 Missense_Mutation p.T184A 0.22 tolerated(0.77) benign(0.002) TCGA-CG-5721-01 17 904398 904398 T C TIMM22 3'UTR 0.26 TCGA-CG-5721-01 17 9808152 9808152 T C RCVRN Missense_Mutation p.T116A 0.18 tolerated(0.13) benign(0.003) TCGA-CG-5721-01 17 986819 986819 C T ABR Missense_Mutation p.A194T 0.08 deleterious(0) possibly_damaging(0.732) TCGA-CG-5721-01 18 10691293 10691293 A G PIEZO2 Missense_Mutation p.Y2314H 0.22 deleterious(0) probably_damaging(0.96) TCGA-CG-5721-01 18 12982630 12982630 T C SEH1L Missense_Mutation p.V292A 0.15 deleterious(0) possibly_damaging(0.547) TCGA-CG-5721-01 18 13117599 13117599 C T CEP192 Missense_Mutation p.P2478S 0.15 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 18 13682058 13682058 G A FAM210A Missense_Mutation p.R7W 0.18 deleterious_low_confidence(0) possibly_damaging(0.708) TCGA-CG-5721-01 18 13731863 13731863 A G RNMT Missense_Mutation p.K116R 0.22 tolerated(0.32) benign(0.013) TCGA-CG-5721-01 18 13826335 13826335 A G MC5R Missense_Mutation p.I191V 0.18 tolerated(0.81) benign(0.055) TCGA-CG-5721-01 18 14184003 14184003 T C ANKRD20A5P RNA 0.18 TCGA-CG-5721-01 18 19153442 19153442 T - ESCO1 Frame_Shift_Del p.M455* 0.13 TCGA-CG-5721-01 18 19283615 19283615 A G ABHD3 Missense_Mutation p.C86R 0.13 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 18 19418353 19418353 A G MIB1 Silent p.L619L 0.22 TCGA-CG-5721-01 18 19762729 19762729 A G GATA6 Silent p.P480P 0.15 TCGA-CG-5721-01 18 19996570 19996570 C T CTAGE1 Missense_Mutation p.R402Q 0.19 deleterious(0) possibly_damaging(0.527) TCGA-CG-5721-01 18 20837427 20837427 A G CABLES1 3'UTR 0.24 TCGA-CG-5721-01 18 20889670 20889670 C T TMEM241 Silent p.A268A 0.22 TCGA-CG-5721-01 18 21044566 21044566 A G RIOK3 Missense_Mutation p.R173G 0.24 deleterious(0.01) probably_damaging(0.964) TCGA-CG-5721-01 18 21123433 21123433 A G NPC1 Missense_Mutation p.V744A 0.22 tolerated(0.11) benign(0.031) TCGA-CG-5721-01 18 21128008 21128008 A G NPC1 Silent p.D573D 0.18 TCGA-CG-5721-01 18 21136572 21136572 C T NPC1 Missense_Mutation p.A321T 0.10 tolerated(0.3) benign(0.005) TCGA-CG-5721-01 18 21140278 21140278 G A NPC1 Silent p.D266D 0.16 TCGA-CG-5721-01 18 21141338 21141338 G A NPC1 Missense_Mutation p.T206I 0.19 tolerated(0.34) benign(0.002) TCGA-CG-5721-01 18 21494727 21494727 G A LAMA3 Missense_Mutation p.G2516E 0.18 benign(0.008) TCGA-CG-5721-01 18 22804898 22804898 A G ZNF521 Missense_Mutation p.M995T 0.19 deleterious(0.02) benign(0.2) TCGA-CG-5721-01 18 23614972 23614972 A G SS18 Missense_Mutation p.Y365H 0.13 deleterious_low_confidence(0) unknown(0) TCGA-CG-5721-01 18 23731934 23731934 A G PSMA8 Silent p.A120A 0.18 TCGA-CG-5721-01 18 23758901 23758901 A G PSMA8 Silent p.K201K 0.23 TCGA-CG-5721-01 18 24722666 24722666 T C CHST9 Silent p.E36E 0.21 TCGA-CG-5721-01 18 2544269 2544269 C T METTL4 Missense_Mutation p.V400M 0.23 tolerated(0.09) benign(0.067) TCGA-CG-5721-01 18 2575051 2575051 G A NDC80 Silent p.S55S 0.25 TCGA-CG-5721-01 18 28602467 28602467 A G DSC3 Silent p.G259G 0.18 TCGA-CG-5721-01 18 28647936 28647936 A - DSC2 3'UTR 0.14 TCGA-CG-5721-01 18 29116366 29116366 A - DSG2 Frame_Shift_Del p.K543Nfs*4 0.25 TCGA-CG-5721-01 18 2921586 2921586 T C LPIN2 Missense_Mutation p.N796S 0.19 deleterious(0) probably_damaging(0.998) TCGA-CG-5721-01 18 29867755 29867755 G A GAREM Missense_Mutation p.H269Y 0.17 deleterious(0) probably_damaging(0.995) TCGA-CG-5721-01 18 30092752 30092752 A - WBP11P1 RNA 0.19 TCGA-CG-5721-01 18 30806795 30806796 - T CCDC178 Frame_Shift_Ins p.L540Tfs*5 0.26 TCGA-CG-5721-01 18 30846912 30846912 A T CCDC178 Missense_Mutation p.D459E 0.15 tolerated(0.77) benign(0.103) TCGA-CG-5721-01 18 30950126 30950126 T C CCDC178 Missense_Mutation p.Y79C 0.20 deleterious(0) probably_damaging(0.992) TCGA-CG-5721-01 18 3100193 3100193 G A MYOM1 Missense_Mutation p.R1231C 0.16 deleterious(0.02) benign(0.337) TCGA-CG-5721-01 18 31251755 31251755 A G ASXL3 Missense_Mutation p.M214V 0.20 benign(0.006) TCGA-CG-5721-01 18 31324921 31324921 A C ASXL3 Missense_Mutation p.Q1703H 0.19 possibly_damaging(0.606) TCGA-CG-5721-01 18 31325827 31325827 T C ASXL3 Silent p.T2005T 0.17 TCGA-CG-5721-01 18 33689425 33689425 G C SLC39A6 3'UTR 0.36 TCGA-CG-5721-01 18 33721158 33721158 T C ELP2 Silent p.N259N 0.20 TCGA-CG-5721-01 18 33750064 33750064 T C ELP2 Silent p.C770C 0.22 TCGA-CG-5721-01 18 40853990 40853990 G A SYT4 Missense_Mutation p.S135F 0.28 deleterious(0.03) probably_damaging(0.959) TCGA-CG-5721-01 18 43438628 43438628 C T EPG5 Missense_Mutation p.V2377I 0.29 deleterious(0.03) possibly_damaging(0.899) TCGA-CG-5721-01 18 43464646 43464646 T C EPG5 Missense_Mutation p.Y1747C 0.16 deleterious(0) probably_damaging(0.993) TCGA-CG-5721-01 18 43703311 43703311 C A HAUS1 Missense_Mutation p.S216Y 0.16 deleterious(0) probably_damaging(0.986) TCGA-CG-5721-01 18 44560527 44560527 A G TCEB3B Missense_Mutation p.V370A 0.16 tolerated(1) benign(0.005) TCGA-CG-5721-01 18 44639388 44639388 C T HDHD2 Silent p.G212G 0.08 TCGA-CG-5721-01 18 44662707 44662707 T C HDHD2 Intron 0.21 TCGA-CG-5721-01 18 47017228 47017228 C T RPL17 Missense_Mutation p.V51I 0.17 deleterious(0.02) benign(0.009) TCGA-CG-5721-01 18 47796300 47796300 A G MBD1 Intron 0.16 TCGA-CG-5721-01 18 47808995 47808995 T C CXXC1 Missense_Mutation p.T651A 0.25 deleterious(0.02) probably_damaging(0.971) TCGA-CG-5721-01 18 48446896 48446896 T C ME2 Missense_Mutation p.Y269H 0.17 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 18 52604149 52604149 T C CCDC68 Missense_Mutation p.N129S 0.06 tolerated(0.4) benign(0.065) TCGA-CG-5721-01 18 53254318 53254318 T C TCF4 Silent p.L112L 0.16 TCGA-CG-5721-01 18 54283492 54283492 A G TXNL1 Silent p.F182F 0.16 TCGA-CG-5721-01 18 54398627 54398627 T C WDR7 Silent p.R596R 0.13 TCGA-CG-5721-01 18 54483318 54483318 C T WDR7 Missense_Mutation p.P1083S 0.19 tolerated(0.76) benign(0) TCGA-CG-5721-01 18 55238724 55238724 C T FECH Silent p.E127E 0.19 TCGA-CG-5721-01 18 55274419 55274419 A G NARS Silent p.C316C 0.15 TCGA-CG-5721-01 18 56202354 56202355 TC - ALPK2 Frame_Shift_Del p.K1689Vfs*36 0.18 TCGA-CG-5721-01 18 56246328 56246328 A G ALPK2 Silent p.G560G 0.05 TCGA-CG-5721-01 18 56985755 56985755 A G CPLX4 5'UTR 0.21 TCGA-CG-5721-01 18 580755 580755 A G CETN1 Missense_Mutation p.D116G 0.20 deleterious(0.01) possibly_damaging(0.804) TCGA-CG-5721-01 18 59483265 59483265 A G RNF152 Silent p.G144G 0.08 TCGA-CG-5721-01 18 59777147 59777147 A - PIGN Frame_Shift_Del p.L499Cfs*2 0.19 TCGA-CG-5721-01 18 59878464 59878464 A - KIAA1468 Frame_Shift_Del p.V204Wfs*22 0.18 TCGA-CG-5721-01 18 60506064 60506064 T C PHLPP1 Silent p.S607S 0.18 TCGA-CG-5721-01 18 61064287 61064287 A G VPS4B Missense_Mutation p.S358P 0.12 deleterious(0.05) benign(0.356) TCGA-CG-5721-01 18 61582880 61582880 G A SERPINB10 Missense_Mutation p.A46T 0.20 tolerated(0.25) benign(0.06) TCGA-CG-5721-01 18 633332 633332 A G CLUL1 Silent p.L297L 0.22 TCGA-CG-5721-01 18 65178971 65178971 T - DSEL Frame_Shift_Del p.R969Efs*16 0.16 TCGA-CG-5721-01 18 65181836 65181836 T C DSEL Missense_Mutation p.M14V 0.23 tolerated_low_confidence(0.61) benign(0.14) TCGA-CG-5721-01 18 66344074 66344074 T C TMX3 3'UTR 0.26 TCGA-CG-5721-01 18 66721427 66721427 T C CCDC102B 3'UTR 0.24 TCGA-CG-5721-01 18 672816 672816 G T ENOSF1 3'Flank 0.19 TCGA-CG-5721-01 18 67697273 67697273 G T RTTN Missense_Mutation p.P1907H 0.17 deleterious(0) probably_damaging(0.984) TCGA-CG-5721-01 18 67715294 67715294 T C RTTN Silent p.L1818L 0.23 TCGA-CG-5721-01 18 677751 677751 T - ENOSF1 Frame_Shift_Del p.K354Sfs*22 0.24 TCGA-CG-5721-01 18 67781679 67781679 A T RTTN Splice_Site p.X1228_splice 0.18 TCGA-CG-5721-01 18 6909002 6909002 T C ARHGAP28 Missense_Mutation p.Y533H 0.21 tolerated(0.09) benign(0.049) TCGA-CG-5721-01 18 72347596 72347596 T C ZNF407 Missense_Mutation p.Y1541H 0.23 deleterious(0.03) probably_damaging(0.999) TCGA-CG-5721-01 18 72999834 72999834 G T TSHZ1 Silent p.V779V 0.20 TCGA-CG-5721-01 18 74091364 74091364 C T ZNF516 Silent p.Q902Q 0.14 TCGA-CG-5721-01 18 745763 745763 A T YES1 Nonsense_Mutation p.Y223* 0.19 TCGA-CG-5721-01 18 74624288 74624288 G T ZNF236 Missense_Mutation p.S963I 0.16 deleterious(0.01) benign(0.439) TCGA-CG-5721-01 18 74680433 74680433 A G ZNF236 3'UTR 0.25 TCGA-CG-5721-01 18 77133944 77133944 C T ATP9B Silent p.F1039F 0.21 TCGA-CG-5721-01 18 77456018 77456018 C T CTDP1 Missense_Mutation p.T147M 0.31 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 18 8784591 8784591 G A SOGA2 Missense_Mutation p.G494D 0.14 tolerated(0.66) benign(0.03) TCGA-CG-5721-01 19 10132286 10132286 C T RDH8 Missense_Mutation p.T286M 0.11 tolerated(0.12) benign(0.099) TCGA-CG-5721-01 19 10252877 10252877 A G DNMT1 Missense_Mutation p.S1046P 0.14 tolerated(0.1) benign(0.077) TCGA-CG-5721-01 19 10284549 10284549 T C DNMT1 Silent p.E227E 0.22 TCGA-CG-5721-01 19 10394791 10394791 C T ICAM1 Silent p.D240D 0.21 TCGA-CG-5721-01 19 1043448 1043448 T - ABCA7 Frame_Shift_Del p.F303Lfs*9 0.26 TCGA-CG-5721-01 19 10475609 10475609 T C TYK2 Missense_Mutation p.Y376C 0.17 tolerated(0.14) possibly_damaging(0.571) TCGA-CG-5721-01 19 10599954 10599954 G A KEAP1 Missense_Mutation p.T541I 0.13 tolerated(0.14) benign(0.162) TCGA-CG-5721-01 19 10602716 10602716 A G KEAP1 Missense_Mutation p.C288R 0.18 deleterious(0.02) possibly_damaging(0.456) TCGA-CG-5721-01 19 10670352 10670352 G A KRI1 Silent p.S326S 0.16 TCGA-CG-5721-01 19 1074149 1074149 G - HMHA1 Frame_Shift_Del p.G297Afs*16 0.26 TCGA-CG-5721-01 19 10794696 10794696 C T ILF3 Intron 0.17 TCGA-CG-5721-01 19 12090673 12090673 A G ZNF763 3'UTR 0.19 TCGA-CG-5721-01 19 12186294 12186294 G T ZNF844 Missense_Mutation p.R120M 0.18 tolerated(0.17) possibly_damaging(0.507) TCGA-CG-5721-01 19 12243602 12243602 G A ZNF20 Nonsense_Mutation p.R467* 0.22 TCGA-CG-5721-01 19 1234739 1234739 T C C19orf26 Missense_Mutation p.Y153C 0.23 deleterious(0) probably_damaging(0.983) TCGA-CG-5721-01 19 12501728 12501728 C T ZNF799 Missense_Mutation p.R495K 0.06 tolerated(0.28) benign(0.001) TCGA-CG-5721-01 19 12501734 12501734 T C ZNF799 Missense_Mutation p.Q493R 0.07 tolerated(0.47) benign(0.001) TCGA-CG-5721-01 19 12541723 12541723 A G ZNF443 Silent p.H421H 0.06 TCGA-CG-5721-01 19 12758258 12758258 C A MAN2B1 Missense_Mutation p.R940M 0.20 tolerated(0.06) benign(0.158) TCGA-CG-5721-01 19 12882282 12882282 A G HOOK2 Missense_Mutation p.Y177H 0.30 tolerated(0.44) possibly_damaging(0.856) TCGA-CG-5721-01 19 13035921 13035921 G A FARSA Silent p.G303G 0.28 TCGA-CG-5721-01 19 13059009 13059009 A G RAD23A Missense_Mutation p.T85A 0.17 tolerated(0.81) benign(0) TCGA-CG-5721-01 19 13084403 13084403 A G DAND5 Missense_Mutation p.I175M 0.06 tolerated(0.35) benign(0.024) TCGA-CG-5721-01 19 13323264 13323264 C A CACNA1A Missense_Mutation p.K2041N 0.15 possibly_damaging(0.607) TCGA-CG-5721-01 19 13409915 13409915 G A CACNA1A Silent p.T844T 0.22 TCGA-CG-5721-01 19 13879676 13879676 G A MRI1 Missense_Mutation p.D255N 0.24 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 19 13885340 13885340 A G C19orf53 Missense_Mutation p.K17E 0.23 deleterious(0.01) possibly_damaging(0.828) TCGA-CG-5721-01 19 13941371 13941371 C T ZSWIM4 Missense_Mutation p.T826M 0.14 tolerated(0.24) unknown(0) TCGA-CG-5721-01 19 14040219 14040219 T C CC2D1A Silent p.S849S 0.07 TCGA-CG-5721-01 19 14143218 14143218 T C IL27RA Missense_Mutation p.C41R 0.18 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 19 14159811 14159811 T C IL27RA Missense_Mutation p.V387A 0.19 deleterious(0) probably_damaging(0.914) TCGA-CG-5721-01 19 14218178 14218178 T - PRKACA Frame_Shift_Del p.K30Nfs*29 0.19 TCGA-CG-5721-01 19 14232432 14232432 T C ASF1B Missense_Mutation p.E105G 0.32 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 19 14268255 14268255 G A LPHN1 Silent p.N856N 0.23 TCGA-CG-5721-01 19 1434758 1434758 T C DAZAP1 Silent p.S357S 0.11 TCGA-CG-5721-01 19 14501875 14501875 C T CD97 Silent p.S110S 0.16 TCGA-CG-5721-01 19 14554341 14554341 G A PKN1 Missense_Mutation p.V134M 0.69 tolerated(0.06) benign(0.203) TCGA-CG-5721-01 19 14580254 14580254 T C PKN1 Missense_Mutation p.F699S 0.22 deleterious(0.01) probably_damaging(0.979) TCGA-CG-5721-01 19 14591535 14591535 C - GIPC1 Frame_Shift_Del p.G115Afs*13 0.19 TCGA-CG-5721-01 19 14629004 14629004 T C DNAJB1 Missense_Mutation p.D53G 0.15 deleterious(0.03) possibly_damaging(0.845) TCGA-CG-5721-01 19 14952342 14952342 G A OR7A10 Silent p.T116T 0.21 TCGA-CG-5721-01 19 15224736 15224737 GA - SYDE1 Frame_Shift_Del p.E726Afs*20 0.15 TCGA-CG-5721-01 19 15271701 15271701 G T NOTCH3 Silent p.T2246T 0.16 TCGA-CG-5721-01 19 15302962 15302962 C T NOTCH3 Missense_Mutation p.R163Q 0.26 tolerated(0.72) benign(0.386) TCGA-CG-5721-01 19 15376427 15376427 A G BRD4 Missense_Mutation p.V196A 0.23 unknown(0) TCGA-CG-5721-01 19 15465764 15465764 T C AKAP8 Missense_Mutation p.T681A 0.21 tolerated_low_confidence(0.13) benign(0.048) TCGA-CG-5721-01 19 15479061 15479061 T C AKAP8 Missense_Mutation p.D382G 0.26 deleterious(0.02) possibly_damaging(0.848) TCGA-CG-5721-01 19 15839069 15839069 C T OR10H2 Silent p.L72L 0.20 TCGA-CG-5721-01 19 1584655 1584655 C T MBD3 Missense_Mutation p.A98T 0.16 tolerated(0.77) benign(0.026) TCGA-CG-5721-01 19 15917849 15917849 A G OR10H1 3'UTR 0.18 TCGA-CG-5721-01 19 16319907 16319907 C T AP1M1 Silent p.N155N 0.25 TCGA-CG-5721-01 19 16596064 16596064 G A CALR3 Silent p.P134P 0.20 TCGA-CG-5721-01 19 16612295 16612295 A - C19orf44 Frame_Shift_Del p.N233Tfs*26 0.21 TCGA-CG-5721-01 19 16688193 16688193 G A MED26 Missense_Mutation p.R150W 0.17 deleterious(0) probably_damaging(0.947) TCGA-CG-5721-01 19 16942437 16942437 A G SIN3B Missense_Mutation p.I120M 0.18 deleterious(0.02) benign(0.043) TCGA-CG-5721-01 19 17039982 17039982 G A CPAMD8 Missense_Mutation p.R1019C 0.12 tolerated(0.22) benign(0.009) TCGA-CG-5721-01 19 17081839 17081839 G A CPAMD8 Missense_Mutation p.T739M 0.20 deleterious(0.03) benign(0.26) TCGA-CG-5721-01 19 17163650 17163650 T C HAUS8 Missense_Mutation p.D305G 0.16 deleterious(0.01) probably_damaging(1) TCGA-CG-5721-01 19 17312954 17312954 G A MYO9B Missense_Mutation p.V1560M 0.20 deleterious(0.05) probably_damaging(0.999) TCGA-CG-5721-01 19 17394238 17394238 T C ANKLE1 Missense_Mutation p.V222A 0.17 deleterious(0.01) benign(0.233) TCGA-CG-5721-01 19 17397362 17397362 G A ANKLE1 3'UTR 0.27 TCGA-CG-5721-01 19 17653018 17653018 G A FAM129C Missense_Mutation p.R446Q 0.20 tolerated(0.61) benign(0.016) TCGA-CG-5721-01 19 17679457 17679457 C A COLGALT1 Missense_Mutation p.P255H 0.16 deleterious(0) possibly_damaging(0.886) TCGA-CG-5721-01 19 17885203 17885203 C T FCHO1 Missense_Mutation p.A279V 0.21 tolerated(0.12) possibly_damaging(0.594) TCGA-CG-5721-01 19 17973010 17973010 C A RPL18A Silent p.T102T 0.14 TCGA-CG-5721-01 19 1802528 1802528 T C ATP8B3 Missense_Mutation p.I341V 0.18 tolerated(0.26) benign(0.074) TCGA-CG-5721-01 19 18252739 18252739 C T MAST3 Silent p.F722F 0.27 TCGA-CG-5721-01 19 18274130 18274130 C T PIK3R2 Missense_Mutation p.H450Y 0.23 deleterious(0) probably_damaging(0.99) TCGA-CG-5721-01 19 18279691 18279691 A G PIK3R2 Missense_Mutation p.Y655C 0.17 deleterious(0) probably_damaging(0.994) TCGA-CG-5721-01 19 18543405 18543405 T C SSBP4 Silent p.S247S 0.18 TCGA-CG-5721-01 19 18557206 18557206 C T ELL Silent p.L539L 0.23 TCGA-CG-5721-01 19 18648475 18648475 C T FKBP8 Missense_Mutation p.R294H 0.12 tolerated(0.32) benign(0.037) TCGA-CG-5721-01 19 18886579 18886579 G A CRTC1 Silent p.S563S 0.24 TCGA-CG-5721-01 19 18893913 18893913 G A COMP Silent p.C726C 0.21 TCGA-CG-5721-01 19 19260114 19260114 G A MEF2B Missense_Mutation p.T60M 0.22 deleterious(0) probably_damaging(0.997) TCGA-CG-5721-01 19 19308408 19308408 C T RFXANK Missense_Mutation p.T139I 0.26 deleterious(0.05) benign(0.101) TCGA-CG-5721-01 19 19387353 19387353 G A SUGP1 3'UTR 0.13 TCGA-CG-5721-01 19 19611975 19611975 G A GATAD2A Missense_Mutation p.C417Y 0.19 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 19 19640291 19640291 C T NDUFA13 3'Flank 0.17 TCGA-CG-5721-01 19 19788767 19788767 C T ZNF101 Missense_Mutation p.T33M 0.22 tolerated(1) benign(0) TCGA-CG-5721-01 19 19790797 19790797 T C ZNF101 Silent p.T333T 0.16 TCGA-CG-5721-01 19 19822072 19822072 T C ZNF14 3'UTR 0.25 TCGA-CG-5721-01 19 20117187 20117187 T C ZNF682 Missense_Mutation p.D375G 0.17 tolerated(1) benign(0.006) TCGA-CG-5721-01 19 20308530 20308530 T C ZNF486 Silent p.L337L 0.22 TCGA-CG-5721-01 19 20735323 20735324 - T ZNF737 Frame_Shift_Ins p.P62Tfs*8 0.21 TCGA-CG-5721-01 19 20959194 20959194 T C ZNF66 5'Flank 0.30 TCGA-CG-5721-01 19 2109159 2109159 G A AP3D1 Missense_Mutation p.S1133L 0.16 tolerated(0.07) benign(0.021) TCGA-CG-5721-01 19 21240516 21240516 C T ZNF430 Missense_Mutation p.R468W 0.15 tolerated(0.34) benign(0.003) TCGA-CG-5721-01 19 21299731 21299731 A G ZNF714 Silent p.K87K 0.15 TCGA-CG-5721-01 19 21300315 21300315 A G ZNF714 Missense_Mutation p.K282R 0.21 deleterious(0.03) benign(0.035) TCGA-CG-5721-01 19 2132554 2132554 G A AP3D1 Silent p.Y126Y 0.28 TCGA-CG-5721-01 19 21512032 21512032 G A ZNF708 5'UTR 0.28 TCGA-CG-5721-01 19 21606088 21606088 T G ZNF493 Silent p.S209S 0.16 TCGA-CG-5721-01 19 21606418 21606418 A G ZNF493 Silent p.K319K 0.17 TCGA-CG-5721-01 19 21991830 21991830 T C ZNF43 Missense_Mutation p.T337A 0.07 tolerated(0.06) possibly_damaging(0.595) TCGA-CG-5721-01 19 22156465 22156465 T C ZNF208 Silent p.E457E 0.19 TCGA-CG-5721-01 19 22270970 22270970 A G ZNF257 Missense_Mutation p.T140A 0.16 deleterious(0.04) benign(0.049) TCGA-CG-5721-01 19 22271493 22271493 A G ZNF257 Missense_Mutation p.K314R 0.19 deleterious(0.03) benign(0.363) TCGA-CG-5721-01 19 2229865 2229865 G A DOT1L 3'UTR 0.35 TCGA-CG-5721-01 19 22363694 22363694 A G ZNF676 Silent p.H275H 0.18 TCGA-CG-5721-01 19 23544026 23544026 A G ZNF91 Silent p.H585H 0.13 TCGA-CG-5721-01 19 2514976 2514976 G A GNG7 3'UTR 0.11 TCGA-CG-5721-01 19 2834447 2834447 A - ZNF554 Frame_Shift_Del p.K406Sfs*18 0.13 TCGA-CG-5721-01 19 2917638 2917638 A G ZNF57 Missense_Mutation p.H340R 0.05 deleterious(0.02) benign(0.001) TCGA-CG-5721-01 19 2917975 2917975 C T ZNF57 Silent p.H452H 0.21 TCGA-CG-5721-01 19 30199167 30199167 C T C19orf12 Missense_Mutation p.A63T 0.22 deleterious(0.02) possibly_damaging(0.837) TCGA-CG-5721-01 19 308808 308808 C T MIER2 Missense_Mutation p.G368R 0.20 tolerated(0.06) probably_damaging(0.999) TCGA-CG-5721-01 19 30935840 30935840 G A ZNF536 Silent p.E457E 0.21 TCGA-CG-5721-01 19 31768852 31768852 T - TSHZ3 Frame_Shift_Del p.K616Rfs*13 0.22 TCGA-CG-5721-01 19 33464114 33464114 C - C19orf40 Frame_Shift_Del p.P6Lfs*41 0.20 TCGA-CG-5721-01 19 33471032 33471032 C T RHPN2 Missense_Mutation p.G644D 0.17 deleterious(0.01) possibly_damaging(0.847) TCGA-CG-5721-01 19 336173 336173 C T MIER2 Missense_Mutation p.A4T 0.24 deleterious_low_confidence(0) possibly_damaging(0.678) TCGA-CG-5721-01 19 33647305 33647305 G A WDR88 Missense_Mutation p.G285D 0.20 deleterious(0.02) probably_damaging(0.997) TCGA-CG-5721-01 19 33693826 33693826 A G LRP3 Missense_Mutation p.N65S 0.18 tolerated(0.24) probably_damaging(0.989) TCGA-CG-5721-01 19 33700230 33700230 A G SLC7A10 Silent p.C475C 0.14 TCGA-CG-5721-01 19 33703794 33703794 G - SLC7A10 Frame_Shift_Del p.T158Pfs*12 0.21 TCGA-CG-5721-01 19 34263028 34263028 G A CHST8 Missense_Mutation p.R112H 0.15 deleterious(0.01) possibly_damaging(0.847) TCGA-CG-5721-01 19 3452546 3452546 C T NFIC Missense_Mutation p.T384M 0.22 deleterious(0.05) possibly_damaging(0.81) TCGA-CG-5721-01 19 34818956 34818956 T C KIAA0355 Missense_Mutation p.M335T 0.19 deleterious(0.03) benign(0.038) TCGA-CG-5721-01 19 35249799 35249799 A G ZNF599 3'UTR 0.19 TCGA-CG-5721-01 19 35786812 35786812 T C MAG Missense_Mutation p.Y115H 0.23 deleterious(0.04) benign(0.039) TCGA-CG-5721-01 19 35800929 35800929 T C MAG Missense_Mutation p.Y462H 0.19 tolerated(0.08) benign(0.023) TCGA-CG-5721-01 19 35828763 35828763 C T CD22 Missense_Mutation p.T275M 0.23 tolerated(0.1) possibly_damaging(0.86) TCGA-CG-5721-01 19 36024441 36024441 C T GAPDHS Silent p.R4R 0.17 TCGA-CG-5721-01 19 36047837 36047837 T C ATP4A Missense_Mutation p.K616R 0.19 tolerated(0.06) benign(0.313) TCGA-CG-5721-01 19 36049992 36049992 C T ATP4A Silent p.S386S 0.15 TCGA-CG-5721-01 19 36207454 36207454 A G ZBTB32 Missense_Mutation p.T422A 0.18 deleterious(0) benign(0.217) TCGA-CG-5721-01 19 36216188 36216189 - C KMT2B Frame_Shift_Ins p.M1202Dfs*22 0.13 TCGA-CG-5721-01 19 36218451 36218451 G - KMT2B Frame_Shift_Del p.G1412Afs*10 0.24 TCGA-CG-5721-01 19 36231374 36231374 G - IGFLR1 Frame_Shift_Del p.D84Tfs*14 0.17 TCGA-CG-5721-01 19 36236883 36236883 T C PSENEN Missense_Mutation p.Y18H 0.20 deleterious(0) probably_damaging(0.976) TCGA-CG-5721-01 19 3623876 3623876 T C CACTIN Missense_Mutation p.K151R 0.22 tolerated(0.33) unknown(0) TCGA-CG-5721-01 19 36245365 36245365 A G LIN37 Missense_Mutation p.E244G 0.18 deleterious(0) benign(0.113) TCGA-CG-5721-01 19 36336323 36336323 T C NPHS1 Missense_Mutation p.H626R 0.19 deleterious(0.03) possibly_damaging(0.555) TCGA-CG-5721-01 19 36352822 36352822 T C KIRREL2 Missense_Mutation p.L469P 0.23 deleterious(0) probably_damaging(0.977) TCGA-CG-5721-01 19 36357201 36357201 A G KIRREL2 Missense_Mutation p.H645R 0.19 tolerated(0.5) benign(0.01) TCGA-CG-5721-01 19 36357511 36357511 G T KIRREL2 3'UTR 0.38 TCGA-CG-5721-01 19 36517143 36517143 A G CLIP3 Missense_Mutation p.F196S 0.07 deleterious(0) benign(0.113) TCGA-CG-5721-01 19 36595572 36595572 C T WDR62 Missense_Mutation p.R1436C 0.19 tolerated(0.08) possibly_damaging(0.599) TCGA-CG-5721-01 19 36673869 36673869 T C ZNF565 Silent p.K333K 0.19 TCGA-CG-5721-01 19 367122 367122 G T THEG Missense_Mutation p.P286T 0.18 deleterious(0.01) probably_damaging(0.96) TCGA-CG-5721-01 19 36831647 36831647 T C ZFP14 Missense_Mutation p.I361V 0.19 tolerated(0.13) probably_damaging(0.992) TCGA-CG-5721-01 19 37038880 37038880 T C ZNF529 Missense_Mutation p.T194A 0.15 deleterious(0.02) benign(0.011) TCGA-CG-5721-01 19 37368485 37368485 T G ZNF345 Missense_Mutation p.I251M 0.18 deleterious(0.03) probably_damaging(0.981) TCGA-CG-5721-01 19 37382950 37382950 G A ZNF829 Missense_Mutation p.A329V 0.18 deleterious(0.01) possibly_damaging(0.495) TCGA-CG-5721-01 19 37619822 37619822 T C ZNF420 Silent p.Y643Y 0.13 TCGA-CG-5721-01 19 3779034 3779034 G A MATK Missense_Mutation p.R386W 0.27 deleterious(0) probably_damaging(0.953) TCGA-CG-5721-01 19 37879579 37879579 A G ZNF527 Missense_Mutation p.K210E 0.25 tolerated(0.1) benign(0.002) TCGA-CG-5721-01 19 38579367 38579367 C T SIPA1L3 Missense_Mutation p.A514V 0.26 tolerated(0.26) benign(0.003) TCGA-CG-5721-01 19 38899571 38899571 C A FAM98C 3'UTR 0.19 TCGA-CG-5721-01 19 38899594 38899594 C T FAM98C 3'UTR 0.33 TCGA-CG-5721-01 19 38993522 38993522 A G RYR1 Missense_Mutation p.Y2613C 0.10 benign(0.128) TCGA-CG-5721-01 19 39380364 39380364 C T SIRT2 Missense_Mutation p.A133T 0.21 tolerated(0.42) benign(0.024) TCGA-CG-5721-01 19 39412061 39412061 C T SARS2 Missense_Mutation p.R189Q 0.16 tolerated(0.09) benign(0.031) TCGA-CG-5721-01 19 39589225 39589225 C T PAPL Silent p.D83D 0.17 TCGA-CG-5721-01 19 39759494 39759494 C T IFNL2 Missense_Mutation p.A63V 0.27 deleterious(0.04) benign(0.275) TCGA-CG-5721-01 19 39879431 39879431 C T PAF1 Silent p.A237A 0.12 TCGA-CG-5721-01 19 40363056 40363056 G A FCGBP Missense_Mutation p.A5005V 0.15 benign(0.364) TCGA-CG-5721-01 19 40698259 40698259 G T MAP3K10 Silent p.G107G 0.14 TCGA-CG-5721-01 19 40712065 40712065 G A MAP3K10 Splice_Site p.X479_splice 0.27 TCGA-CG-5721-01 19 40721967 40721967 A G TTC9B 3'UTR 0.29 TCGA-CG-5721-01 19 41003397 41003397 C T SPTBN4 Missense_Mutation p.P224S 0.14 deleterious(0.05) benign(0.01) TCGA-CG-5721-01 19 41009954 41009954 G A SPTBN4 Missense_Mutation p.R527Q 0.23 deleterious(0) probably_damaging(0.978) TCGA-CG-5721-01 19 41125264 41125264 G A LTBP4 Missense_Mutation p.C1094Y 0.19 deleterious(0) probably_damaging(0.998) TCGA-CG-5721-01 19 41135314 41135314 T C LTBP4 Silent p.C1577C 0.12 TCGA-CG-5721-01 19 41257276 41257276 T - SNRPA 5'UTR 0.23 TCGA-CG-5721-01 19 41354549 41354549 A G CYP2A6 Missense_Mutation p.F155L 0.15 benign(0.017) TCGA-CG-5721-01 19 41386114 41386114 T C CYP2A7 Missense_Mutation p.T177A 0.16 tolerated(1) benign(0.023) TCGA-CG-5721-01 19 41450410 41450410 A G AC092071.1 5'Flank 0.14 TCGA-CG-5721-01 19 41622091 41622091 A G CYP2F1 5'UTR 0.22 TCGA-CG-5721-01 19 41712580 41712580 C A CYP2S1 3'UTR 0.19 TCGA-CG-5721-01 19 41744382 41744382 G T AXL Silent p.L334L 0.17 TCGA-CG-5721-01 19 41765876 41765876 C T AXL 3'UTR 0.29 TCGA-CG-5721-01 19 42191122 42191122 T C CEACAM7 Missense_Mutation p.N32S 0.09 deleterious(0.03) benign(0.027) TCGA-CG-5721-01 19 42301579 42301579 G A CEACAM3 Missense_Mutation p.M41I 0.18 deleterious(0.02) benign(0.009) TCGA-CG-5721-01 19 4231313 4231313 A G EBI3 Missense_Mutation p.T65A 0.28 deleterious(0) probably_damaging(0.956) TCGA-CG-5721-01 19 42383168 42383168 A G CD79A Missense_Mutation p.N63S 0.17 tolerated(0.08) possibly_damaging(0.457) TCGA-CG-5721-01 19 42463428 42463428 T C RABAC1 Missense_Mutation p.D6G 0.14 deleterious_low_confidence(0.03) unknown(0) TCGA-CG-5721-01 19 42474390 42474390 C T ATP1A3 Missense_Mutation p.R843Q 0.27 tolerated(0.32) benign(0.003) TCGA-CG-5721-01 19 42480695 42480695 T C ATP1A3 Missense_Mutation p.H669R 0.16 tolerated(0.08) probably_damaging(0.996) TCGA-CG-5721-01 19 42507556 42507556 G A GRIK5 Silent p.G814G 0.17 TCGA-CG-5721-01 19 42583295 42583295 G A ZNF574 Silent p.V179V 0.16 TCGA-CG-5721-01 19 42729973 42729973 G A ZNF526 Missense_Mutation p.R473H 0.21 tolerated(0.09) possibly_damaging(0.72) TCGA-CG-5721-01 19 42753338 42753338 T C ERF Missense_Mutation p.D309G 0.14 deleterious(0) possibly_damaging(0.876) TCGA-CG-5721-01 19 42791321 42791321 G A CIC Silent p.T127T 0.29 TCGA-CG-5721-01 19 42795161 42795161 A G CIC Silent p.G747G 0.19 TCGA-CG-5721-01 19 42911584 42911584 C T LIPE Missense_Mutation p.G627S 0.25 tolerated(0.05) probably_damaging(0.963) TCGA-CG-5721-01 19 43023277 43023277 T G CEACAM1 Missense_Mutation p.I357L 0.26 tolerated(0.08) benign(0.026) TCGA-CG-5721-01 19 4409350 4409350 A C CHAF1A Missense_Mutation p.E185A 0.23 tolerated(0.11) unknown(0) TCGA-CG-5721-01 19 44301943 44301943 G A LYPD5 Missense_Mutation p.R186W 0.14 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 19 44418119 44418119 T C ZNF45 Missense_Mutation p.H490R 0.22 deleterious(0) probably_damaging(0.998) TCGA-CG-5721-01 19 44514742 44514742 G A ZNF230 Missense_Mutation p.R184H 0.18 tolerated(0.53) benign(0.006) TCGA-CG-5721-01 19 44635769 44635769 T C ZNF225 Silent p.H334H 0.21 TCGA-CG-5721-01 19 4511061 4511061 C - PLIN4 Frame_Shift_Del p.A957Qfs*2 0.20 TCGA-CG-5721-01 19 45254502 45254502 A G BCL3 Missense_Mutation p.Y92C 0.15 deleterious(0.01) probably_damaging(0.936) TCGA-CG-5721-01 19 45315633 45315633 C T BCAM Missense_Mutation p.R140W 0.17 deleterious(0) probably_damaging(0.932) TCGA-CG-5721-01 19 45867349 45867349 G A ERCC2 Missense_Mutation p.R282W 0.38 deleterious(0) possibly_damaging(0.901) TCGA-CG-5721-01 19 45911617 45911617 C T CD3EAP Nonsense_Mutation p.Q131* 0.15 TCGA-CG-5721-01 19 45997462 45997462 G A RTN2 Missense_Mutation p.T259M 0.22 deleterious_low_confidence(0.05) benign(0.075) TCGA-CG-5721-01 19 46357726 46357726 T C SYMPK Missense_Mutation p.T10A 0.16 tolerated(0.17) benign(0) TCGA-CG-5721-01 19 4684695 4684695 C A DPP9 Missense_Mutation p.G720W 0.31 deleterious(0) probably_damaging(0.996) TCGA-CG-5721-01 19 46914891 46914891 C T CCDC8 Missense_Mutation p.A393T 0.19 benign(0.009) TCGA-CG-5721-01 19 46974297 46974297 C T PNMAL1 5'UTR 0.18 TCGA-CG-5721-01 19 47342048 47342048 G A AP2S1 Silent p.N92N 0.25 TCGA-CG-5721-01 19 47424757 47424757 T C ARHGAP35 Missense_Mutation p.V942A 0.16 tolerated(0.1) benign(0.073) TCGA-CG-5721-01 19 4792619 4792619 T G FEM1A Silent p.P251P 0.15 TCGA-CG-5721-01 19 47987271 47987271 C T KPTN Silent p.K49K 0.15 TCGA-CG-5721-01 19 48244286 48244287 - G EHD2 Frame_Shift_Ins p.A413Rfs*3 0.16 TCGA-CG-5721-01 19 4852237 4852237 G A PLIN3 Missense_Mutation p.T142M 0.16 tolerated(0.13) benign(0.04) TCGA-CG-5721-01 19 48551593 48551593 G T PLA2G4C 3'UTR 0.18 TCGA-CG-5721-01 19 48918135 48918135 C - GRIN2D Frame_Shift_Del p.R478Afs*15 0.26 TCGA-CG-5721-01 19 49012191 49012191 G - LMTK3 Frame_Shift_Del p.A188Pfs*5 0.22 TCGA-CG-5721-01 19 49113254 49113254 C T FAM83E Missense_Mutation p.V213M 0.30 tolerated(0.11) benign(0.021) TCGA-CG-5721-01 19 49119424 49119424 G A RPL18 Silent p.S111S 0.19 TCGA-CG-5721-01 19 4930731 4930731 A G MIR4747 5'Flank 0.14 TCGA-CG-5721-01 19 49671550 49671550 G A TRPM4 Missense_Mutation p.G161D 0.20 deleterious(0.01) probably_damaging(1) TCGA-CG-5721-01 19 49850573 49850573 G A TEAD2 Silent p.P265P 0.21 TCGA-CG-5721-01 19 49868877 49868877 A G DKKL1 Missense_Mutation p.T99A 0.14 deleterious_low_confidence(0) possibly_damaging(0.871) TCGA-CG-5721-01 19 49934038 49934038 A G SLC17A7 Missense_Mutation p.I474T 0.17 deleterious(0.03) possibly_damaging(0.656) TCGA-CG-5721-01 19 49973652 49973652 C T ALDH16A1 Silent p.A779A 0.31 TCGA-CG-5721-01 19 50031729 50031729 G A RCN3 5'UTR 0.20 TCGA-CG-5721-01 19 50333092 50333092 G A MED25 Missense_Mutation p.R192Q 0.50 tolerated(0.35) probably_damaging(0.979) TCGA-CG-5721-01 19 50550263 50550263 T C ZNF473 Missense_Mutation p.S855P 0.14 tolerated(0.06) benign(0.014) TCGA-CG-5721-01 19 50764738 50764738 G A MYH14 Missense_Mutation p.A811T 0.22 deleterious(0.01) possibly_damaging(0.548) TCGA-CG-5721-01 19 50826917 50826917 G A KCNC3 Silent p.F431F 0.12 TCGA-CG-5721-01 19 50868804 50868804 T C NAPSA Silent p.T25T 0.24 TCGA-CG-5721-01 19 50905562 50905562 C T POLD1 Silent p.G230G 0.13 TCGA-CG-5721-01 19 50921195 50921195 G T POLD1 Missense_Mutation p.E1105D 0.44 tolerated(0.31) probably_damaging(0.931) TCGA-CG-5721-01 19 50979589 50979589 T C FAM71E1 Silent p.S19S 0.18 TCGA-CG-5721-01 19 50979605 50979605 G - FAM71E1 Frame_Shift_Del p.P14Lfs*17 0.18 TCGA-CG-5721-01 19 51021967 51021967 T C LRRC4B Missense_Mutation p.T335A 0.33 deleterious(0.03) benign(0.004) TCGA-CG-5721-01 19 5110733 5110733 C T KDM4B Missense_Mutation p.T340M 0.17 benign(0.014) TCGA-CG-5721-01 19 51825371 51825371 T C IGLON5 Missense_Mutation p.C45R 0.19 tolerated(0.86) benign(0.012) TCGA-CG-5721-01 19 51918205 51918205 G - SIGLEC10 Frame_Shift_Del p.S497Afs*11 0.26 TCGA-CG-5721-01 19 51955734 51955734 C G SIGLEC8 Missense_Mutation p.D467H 0.18 tolerated(0.1) benign(0.359) TCGA-CG-5721-01 19 52002707 52002707 G A SIGLEC12 Nonsense_Mutation p.R358* 0.18 TCGA-CG-5721-01 19 5208286 5208286 C T PTPRS Silent p.E1868E 0.14 TCGA-CG-5721-01 19 52091376 52091376 G A ZNF175 Missense_Mutation p.G598S 0.27 tolerated(0.44) possibly_damaging(0.694) TCGA-CG-5721-01 19 52147202 52147202 G - SIGLEC14 Frame_Shift_Del p.P281Lfs*4 0.27 TCGA-CG-5721-01 19 52272320 52272320 C T FPR2 Missense_Mutation p.R137C 0.19 deleterious(0) probably_damaging(0.975) TCGA-CG-5721-01 19 52394084 52394084 A G ZNF577 5'Flank 0.21 TCGA-CG-5721-01 19 52495952 52495952 A G ZNF615 3'UTR 0.17 TCGA-CG-5721-01 19 52519395 52519395 T C ZNF614 Missense_Mutation p.T486A 0.19 deleterious(0.05) benign(0.007) TCGA-CG-5721-01 19 52569204 52569204 C T ZNF841 Missense_Mutation p.R644Q 0.20 tolerated(1) benign(0.089) TCGA-CG-5721-01 19 52569671 52569671 A G ZNF841 Silent p.N488N 0.29 TCGA-CG-5721-01 19 52618022 52618022 A G ZNF616 3'UTR 0.20 TCGA-CG-5721-01 19 52817449 52817449 C T ZNF480 Missense_Mutation p.A39V 0.18 deleterious(0) benign(0.12) TCGA-CG-5721-01 19 52825579 52825579 T C ZNF480 Missense_Mutation p.V359A 0.20 tolerated(0.76) benign(0.127) TCGA-CG-5721-01 19 52918502 52918502 A G ZNF528 Missense_Mutation p.K133E 0.22 tolerated(0.38) benign(0.039) TCGA-CG-5721-01 19 53059174 53059174 G A ZNF808 3'UTR 0.29 TCGA-CG-5721-01 19 53208359 53208359 T C ZNF611 Missense_Mutation p.Y650C 0.20 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 19 53472464 53472464 T C ZNF702P RNA 0.22 TCGA-CG-5721-01 19 53572886 53572886 T C ZNF160 Missense_Mutation p.T301A 0.17 tolerated(0.81) benign(0.166) TCGA-CG-5721-01 19 53612426 53612426 C T ZNF415 Missense_Mutation p.R291Q 0.24 tolerated(1) benign(0.002) TCGA-CG-5721-01 19 53643691 53643691 T C ZNF347 Missense_Mutation p.K798R 0.20 deleterious(0.03) benign(0.234) TCGA-CG-5721-01 19 53740671 53740672 CA - ZNF677 Frame_Shift_Del p.C436Wfs*26 0.22 TCGA-CG-5721-01 19 53741578 53741578 T C ZNF677 Silent p.Q134Q 0.20 TCGA-CG-5721-01 19 53762245 53762245 C A VN1R2 Missense_Mutation p.P206Q 0.19 tolerated(0.08) possibly_damaging(0.833) TCGA-CG-5721-01 19 53770041 53770041 T C VN1R4 Missense_Mutation p.Y293C 0.22 tolerated(0.14) benign(0.007) TCGA-CG-5721-01 19 53958506 53958506 A G ZNF761 RNA 0.21 TCGA-CG-5721-01 19 54081288 54081288 A G ZNF331 3'UTR 0.31 TCGA-CG-5721-01 19 54177496 54177496 G T MIR498 RNA 0.27 TCGA-CG-5721-01 19 54240176 54240176 T C MIR516B1 RNA 0.21 TCGA-CG-5721-01 19 54377168 54377168 T C MYADM Missense_Mutation p.S129P 0.19 tolerated(1) benign(0.004) TCGA-CG-5721-01 19 54754762 54754762 T C LILRB5 Missense_Mutation p.Y555C 0.21 deleterious(0) probably_damaging(0.987) TCGA-CG-5721-01 19 54963842 54963842 G A LENG8 Missense_Mutation p.A76T 0.21 tolerated(0.23) possibly_damaging(0.571) TCGA-CG-5721-01 19 55451007 55451007 A G NLRP7 Missense_Mutation p.F394L 0.25 tolerated(0.08) benign(0.224) TCGA-CG-5721-01 19 55489171 55489171 G A NLRP2 Missense_Mutation p.R126H 0.22 tolerated(0.24) benign(0) TCGA-CG-5721-01 19 55697344 55697344 A G PTPRH Silent p.C929C 0.15 TCGA-CG-5721-01 19 55753611 55753611 G A PPP6R1 Silent p.F256F 0.20 TCGA-CG-5721-01 19 55776758 55776758 C A HSPBP1 Splice_Site p.X298_splice 0.25 TCGA-CG-5721-01 19 55918226 55918226 G A UBE2S Silent p.N36N 0.23 TCGA-CG-5721-01 19 56413559 56413559 G A NLRP13 Silent p.C877C 0.28 TCGA-CG-5721-01 19 57036268 57036268 A T ZNF471 Missense_Mutation p.I278F 0.19 deleterious(0) possibly_damaging(0.711) TCGA-CG-5721-01 19 57065823 57065823 G A ZFP28 Missense_Mutation p.G557R 0.19 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 19 57327050 57327050 G A PEG3 Silent p.G920G 0.16 TCGA-CG-5721-01 19 57330063 57330063 T C PEG3 Missense_Mutation p.E226G 0.05 tolerated(0.12) benign(0.015) TCGA-CG-5721-01 19 57334145 57334145 A G PEG3 Missense_Mutation p.S181P 0.16 tolerated(1) benign(0) TCGA-CG-5721-01 19 57640238 57640239 - A USP29 Frame_Shift_Ins p.R68Kfs*18 0.11 TCGA-CG-5721-01 19 57641676 57641676 A G USP29 Missense_Mutation p.T545A 0.16 deleterious(0) probably_damaging(0.965) TCGA-CG-5721-01 19 57722986 57722986 A G ZNF264 Missense_Mutation p.E174G 0.20 tolerated(0.07) benign(0.009) TCGA-CG-5721-01 19 57743127 57743127 A G AURKC Missense_Mutation p.T26A 0.16 tolerated(0.38) benign(0.007) TCGA-CG-5721-01 19 57746724 57746724 A T AURKC Missense_Mutation p.H290L 0.13 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 19 57839139 57839139 A G ZNF543 Silent p.L103L 0.23 TCGA-CG-5721-01 19 57839764 57839764 G A ZNF543 Missense_Mutation p.V312M 0.26 deleterious(0.04) probably_damaging(0.977) TCGA-CG-5721-01 19 57910856 57910856 T A ZNF548 Missense_Mutation p.S413T 0.06 tolerated(0.24) benign(0.023) TCGA-CG-5721-01 19 57931169 57931169 C T AC003002.6 Silent p.D115D 0.16 TCGA-CG-5721-01 19 57956392 57956392 A G ZNF749 Missense_Mutation p.T626A 0.16 tolerated(0.86) possibly_damaging(0.874) TCGA-CG-5721-01 19 58005228 58005228 T - ZNF419 Frame_Shift_Del p.F437Lfs*151 0.18 TCGA-CG-5721-01 19 58050386 58050386 T C ZNF549 3'UTR 0.15 TCGA-CG-5721-01 19 58083888 58083888 C T ZNF416 Missense_Mutation p.A462T 0.19 deleterious(0.02) possibly_damaging(0.577) TCGA-CG-5721-01 19 58132782 58132782 A G ZNF134 3'UTR 0.20 TCGA-CG-5721-01 19 58152513 58152513 T C ZNF211 Missense_Mutation p.V285A 0.22 tolerated(0.79) benign(0.003) TCGA-CG-5721-01 19 58232449 58232449 G A ZNF671 Silent p.H335H 0.22 TCGA-CG-5721-01 19 58353255 58353255 A G ZNF587B Intron 0.15 TCGA-CG-5721-01 19 58369951 58369951 G A CTD-2583A14.10 Nonsense_Mutation p.W57* 0.15 TCGA-CG-5721-01 19 58439288 58439288 A G ZNF418 Silent p.C87C 0.23 TCGA-CG-5721-01 19 58453789 58453789 A G ZNF256 Silent p.F129F 0.19 TCGA-CG-5721-01 19 58579383 58579383 A G ZNF135 Missense_Mutation p.K535E 0.21 tolerated(0.39) benign(0.439) TCGA-CG-5721-01 19 58773028 58773028 G A ZNF544 Silent p.K352K 0.20 TCGA-CG-5721-01 19 58862876 58862876 A G A1BG Missense_Mutation p.F264S 0.21 deleterious(0) probably_damaging(0.993) TCGA-CG-5721-01 19 58869006 58869006 C T ZNF497 5'UTR 0.18 TCGA-CG-5721-01 19 58928585 58928585 A - ZNF584 Frame_Shift_Del p.K234Rfs*6 0.14 TCGA-CG-5721-01 19 58967261 58967261 T C ZNF324B Missense_Mutation p.V317A 0.13 tolerated(0.41) benign(0.006) TCGA-CG-5721-01 19 58988663 58988663 C A ZNF446 Silent p.R26R 0.18 TCGA-CG-5721-01 19 58989496 58989496 A G ZNF446 Missense_Mutation p.N192S 0.27 tolerated(0.21) benign(0) TCGA-CG-5721-01 19 59012015 59012015 T A SLC27A5 Missense_Mutation p.D414V 0.11 deleterious(0) probably_damaging(0.954) TCGA-CG-5721-01 19 59059476 59059476 C T TRIM28 Missense_Mutation p.H344Y 0.11 deleterious(0) probably_damaging(0.991) TCGA-CG-5721-01 19 59073626 59073626 C T MZF1 Missense_Mutation p.R673H 0.23 deleterious(0) probably_damaging(0.945) TCGA-CG-5721-01 19 5951588 5951588 T - RANBP3 Frame_Shift_Del p.N33Tfs*31 0.29 TCGA-CG-5721-01 19 617784 617784 A G POLRMT Missense_Mutation p.M1163T 0.16 deleterious(0) probably_damaging(0.93) TCGA-CG-5721-01 19 6187367 6187367 C A ACSBG2 Silent p.P538P 0.24 TCGA-CG-5721-01 19 621761 621761 A G POLRMT Missense_Mutation p.V646A 0.08 deleterious(0) benign(0.194) TCGA-CG-5721-01 19 6230666 6230666 G A MLLT1 Missense_Mutation p.P112L 0.22 deleterious(0) probably_damaging(0.92) TCGA-CG-5721-01 19 6230719 6230719 C T MLLT1 Silent p.E94E 0.17 TCGA-CG-5721-01 19 6309743 6309743 C T ACER1 Silent p.L151L 0.22 TCGA-CG-5721-01 19 6456459 6456459 T A SLC25A23 Missense_Mutation p.D152V 0.07 deleterious(0) possibly_damaging(0.557) TCGA-CG-5721-01 19 6467020 6467020 G A CRB3 Missense_Mutation p.C120Y 0.20 deleterious_low_confidence(0) probably_damaging(0.919) TCGA-CG-5721-01 19 6710732 6710732 T C C3 Missense_Mutation p.Y535C 0.09 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 19 6743530 6743530 G A TRIP10 Missense_Mutation p.C145Y 0.14 tolerated(0.1) benign(0.113) TCGA-CG-5721-01 19 7083669 7083669 C A ZNF557 Missense_Mutation p.P403T 0.17 deleterious(0) possibly_damaging(0.853) TCGA-CG-5721-01 19 7150506 7150506 A G INSR Splice_Site p.X756_splice 0.14 TCGA-CG-5721-01 19 7585023 7585023 G A ZNF358 Missense_Mutation p.A299T 0.27 tolerated(0.09) probably_damaging(0.999) TCGA-CG-5721-01 19 7615447 7615447 G A PNPLA6 Missense_Mutation p.R673Q 0.19 deleterious(0) probably_damaging(0.972) TCGA-CG-5721-01 19 7622065 7622065 C T PNPLA6 Missense_Mutation p.R1108W 0.17 deleterious(0) possibly_damaging(0.751) TCGA-CG-5721-01 19 7675769 7675769 C - CAMSAP3 Frame_Shift_Del p.R363Gfs*42 0.30 TCGA-CG-5721-01 19 7794978 7794978 G A CLEC4G Missense_Mutation p.T185M 0.17 deleterious(0.02) probably_damaging(0.919) TCGA-CG-5721-01 19 7831545 7831545 G A CLEC4M Missense_Mutation p.R263H 0.21 tolerated(0.17) possibly_damaging(0.573) TCGA-CG-5721-01 19 7987519 7987519 C - SNAPC2 Frame_Shift_Del p.P294Qfs*11 0.28 TCGA-CG-5721-01 19 8056606 8056606 T C ELAVL1 Missense_Mutation p.T32A 0.19 deleterious(0.05) benign(0.069) TCGA-CG-5721-01 19 808741 808741 C T PTBP1 Missense_Mutation p.T481M 0.16 deleterious(0) probably_damaging(0.986) TCGA-CG-5721-01 19 8175743 8175743 C - FBN3 Frame_Shift_Del p.G1440Vfs*14 0.21 TCGA-CG-5721-01 19 8464891 8464891 C T RAB11B Missense_Mutation p.A62V 0.13 deleterious_low_confidence(0) probably_damaging(1) TCGA-CG-5721-01 19 8550915 8550915 G A HNRNPM Missense_Mutation p.A535T 0.19 tolerated(0.26) benign(0.115) TCGA-CG-5721-01 19 8563898 8563898 T C PRAM1 Missense_Mutation p.D265G 0.19 tolerated(0.08) benign(0.05) TCGA-CG-5721-01 19 881601 881601 C T MED16 Missense_Mutation p.D367N 0.25 deleterious(0.01) possibly_damaging(0.831) TCGA-CG-5721-01 19 881679 881679 T G MED16 Missense_Mutation p.I341L 0.16 tolerated(0.63) benign(0.112) TCGA-CG-5721-01 19 9049048 9049048 G A MUC16 Silent p.S10861S 0.21 TCGA-CG-5721-01 19 9069916 9069916 T C MUC16 Missense_Mutation p.I5844V 0.20 unknown(0) TCGA-CG-5721-01 19 9074359 9074359 T C MUC16 Missense_Mutation p.T4363A 0.18 unknown(0) TCGA-CG-5721-01 19 9074482 9074482 T C MUC16 Missense_Mutation p.T4322A 0.23 unknown(0) TCGA-CG-5721-01 19 9091107 9091107 G A MUC16 Silent p.S236S 0.16 TCGA-CG-5721-01 19 9524215 9524215 T - ZNF266 Frame_Shift_Del p.K462Nfs*95 0.14 TCGA-CG-5721-01 19 965040 965041 - A ARID3A Frame_Shift_Ins p.N387Kfs*10 0.19 TCGA-CG-5721-01 19 9801167 9801167 A G ZNF812 Missense_Mutation p.C338R 0.18 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 19 9801804 9801804 A G ZNF812 Silent p.S125S 0.15 TCGA-CG-5721-01 1 100212942 100212942 G A FRRS1 Missense_Mutation p.R81C 0.17 deleterious(0) probably_damaging(0.994) TCGA-CG-5721-01 1 100316440 100316441 AC - AGL 5'UTR 0.19 TCGA-CG-5721-01 1 10067724 10067724 G A RBP7 Missense_Mutation p.S57N 0.24 deleterious(0) benign(0.076) TCGA-CG-5721-01 1 100964808 100964808 G A CDC14A Missense_Mutation p.R582H 0.24 deleterious_low_confidence(0) probably_damaging(0.97) TCGA-CG-5721-01 1 100964835 100964835 C T CDC14A Missense_Mutation p.P591L 0.22 deleterious_low_confidence(0.01) benign(0.003) TCGA-CG-5721-01 1 101194879 101194879 T A VCAM1 Missense_Mutation p.L382Q 0.21 deleterious(0.05) possibly_damaging(0.838) TCGA-CG-5721-01 1 101387377 101387377 A G SLC30A7 Missense_Mutation p.I274M 0.21 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 1 101431471 101431471 T C SLC30A7 Silent p.T360T 0.13 TCGA-CG-5721-01 1 10381867 10381867 C T KIF1B Silent p.A724A 0.21 TCGA-CG-5721-01 1 10384880 10384880 G T KIF1B Missense_Mutation p.D822Y 0.20 deleterious(0.01) possibly_damaging(0.458) TCGA-CG-5721-01 1 104160673 104160673 G C AMY2A Missense_Mutation p.G89A 0.21 deleterious(0) probably_damaging(0.987) TCGA-CG-5721-01 1 10460487 10460487 A C PGD Missense_Mutation p.D41A 0.19 tolerated(0.3) benign(0.001) TCGA-CG-5721-01 1 107867505 107867505 G A NTNG1 Missense_Mutation p.R283H 0.17 deleterious(0.03) probably_damaging(0.995) TCGA-CG-5721-01 1 108507366 108507366 C T VAV3 Silent p.L42L 0.32 TCGA-CG-5721-01 1 109560141 109560141 T - WDR47 Frame_Shift_Del p.R81Gfs*7 0.21 TCGA-CG-5721-01 1 109607261 109607261 C T TAF13 Missense_Mutation p.V87I 0.18 tolerated(0.58) benign(0.016) TCGA-CG-5721-01 1 109742806 109742806 T C KIAA1324 Silent p.C918C 0.22 TCGA-CG-5721-01 1 109793883 109793883 T A CELSR2 Missense_Mutation p.D394E 0.17 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 1 110151277 110151277 T C GNAT2 Missense_Mutation p.Y146C 0.20 deleterious(0) probably_damaging(0.995) TCGA-CG-5721-01 1 110199418 110199418 A G GSTM4 Intron 0.19 TCGA-CG-5721-01 1 110301149 110301149 G A EPS8L3 Missense_Mutation p.H201Y 0.21 tolerated(0.18) benign(0.006) TCGA-CG-5721-01 1 110734660 110734660 C A SLC6A17 Missense_Mutation p.L311M 0.11 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 1 11078874 11078874 T C TARDBP Missense_Mutation p.S163P 0.24 tolerated(0.05) benign(0.111) TCGA-CG-5721-01 1 110888167 110888168 - T RBM15 Frame_Shift_Ins p.Q959Sfs*5 0.18 TCGA-CG-5721-01 1 11131025 11131025 G A EXOSC10 Missense_Mutation p.R750W 0.22 deleterious(0) possibly_damaging(0.726) TCGA-CG-5721-01 1 11142796 11142796 T C EXOSC10 Missense_Mutation p.Y410C 0.20 deleterious(0.01) probably_damaging(0.997) TCGA-CG-5721-01 1 111490689 111490689 C T LRIF1 Silent p.P734P 0.18 TCGA-CG-5721-01 1 111857963 111857963 A C CHIA Missense_Mutation p.Q129P 0.14 deleterious(0.02) probably_damaging(0.967) TCGA-CG-5721-01 1 112031596 112031596 C T ADORA3 Missense_Mutation p.A170T 0.19 tolerated_low_confidence(0.11) benign(0.019) TCGA-CG-5721-01 1 112525069 112525069 C T KCND3 Missense_Mutation p.V94M 0.20 deleterious(0) benign(0.235) TCGA-CG-5721-01 1 11288788 11288788 G A MTOR Silent p.F989F 0.15 TCGA-CG-5721-01 1 113252813 113252813 G A PPM1J Missense_Mutation p.P497L 0.19 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 1 11333988 11333988 T C UBIAD1 Missense_Mutation p.F134L 0.19 tolerated(1) benign(0.002) TCGA-CG-5721-01 1 113471890 113471890 G - SLC16A1 Frame_Shift_Del p.P14Qfs*10 0.32 TCGA-CG-5721-01 1 113638869 113638869 C T LRIG2 Missense_Mutation p.R325C 0.24 deleterious(0) probably_damaging(0.978) TCGA-CG-5721-01 1 114442364 114442364 A G AP4B1 Intron 0.13 TCGA-CG-5721-01 1 114450657 114450657 C G DCLRE1B Missense_Mutation p.L128V 0.21 deleterious(0.04) possibly_damaging(0.876) TCGA-CG-5721-01 1 114454019 114454019 C A DCLRE1B Missense_Mutation p.H269N 0.14 deleterious(0.01) possibly_damaging(0.868) TCGA-CG-5721-01 1 115168676 115168676 T C DENND2C 5'UTR 0.19 TCGA-CG-5721-01 1 115454180 115454180 A - SYCP1 Frame_Shift_Del p.T504Lfs*13 0.17 TCGA-CG-5721-01 1 11580770 11580770 T C PTCHD2 Missense_Mutation p.S743P 0.29 deleterious(0.04) probably_damaging(0.999) TCGA-CG-5721-01 1 11586864 11586864 G A PTCHD2 Missense_Mutation p.V924M 0.16 deleterious_low_confidence(0) benign(0.214) TCGA-CG-5721-01 1 117078661 117078662 - T CD58 Frame_Shift_Ins p.I185Nfs*6 0.20 TCGA-CG-5721-01 1 117122169 117122169 G A IGSF3 Missense_Mutation p.P1080L 0.07 deleterious(0.02) possibly_damaging(0.493) TCGA-CG-5721-01 1 117122256 117122256 G A IGSF3 Missense_Mutation p.T1051M 0.15 deleterious(0.03) benign(0.006) TCGA-CG-5721-01 1 117156447 117156447 A G IGSF3 Missense_Mutation p.S258P 0.21 deleterious(0.04) possibly_damaging(0.832) TCGA-CG-5721-01 1 11721370 11721370 A G FBXO44 3'UTR 0.24 TCGA-CG-5721-01 1 117297441 117297441 T C CD2 Missense_Mutation p.Y84H 0.20 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 1 117564494 117564494 C T CD101 Missense_Mutation p.R773W 0.20 deleterious(0) possibly_damaging(0.67) TCGA-CG-5721-01 1 117658232 117658232 T C TRIM45 Missense_Mutation p.T478A 0.17 tolerated(0.68) benign(0.009) TCGA-CG-5721-01 1 117663624 117663624 C - TRIM45 Frame_Shift_Del p.G67Efs*42 0.20 TCGA-CG-5721-01 1 118530776 118530776 T C SPAG17 Missense_Mutation p.K1858R 0.25 tolerated(0.1) benign(0.234) TCGA-CG-5721-01 1 119575743 119575743 G A WARS2 Missense_Mutation p.R292C 0.16 tolerated(0.08) benign(0.007) TCGA-CG-5721-01 1 120341118 120341118 A G REG4 Splice_Site p.X137_splice 0.11 TCGA-CG-5721-01 1 12034725 12034725 T C PLOD1 Missense_Mutation p.F682L 0.12 deleterious(0.01) probably_damaging(1) TCGA-CG-5721-01 1 120458677 120458677 T C NOTCH2 Missense_Mutation p.Q2223R 0.18 tolerated(0.32) probably_damaging(0.909) TCGA-CG-5721-01 1 12057394 12057394 A G MFN2 Missense_Mutation p.Q172R 0.09 tolerated(0.51) benign(0.001) TCGA-CG-5721-01 1 12065963 12065963 G A MFN2 Missense_Mutation p.R564Q 0.27 tolerated(0.26) probably_damaging(0.984) TCGA-CG-5721-01 1 12248947 12248947 C T TNFRSF1B Missense_Mutation p.S58L 0.24 deleterious(0.03) benign(0.017) TCGA-CG-5721-01 1 12336565 12336565 T C VPS13D Missense_Mutation p.Y974H 0.17 probably_damaging(0.965) TCGA-CG-5721-01 1 1262961 1262961 C T GLTPD1 Missense_Mutation p.R155C 0.32 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 1 1269515 1269515 T G TAS1R3 Missense_Mutation p.C744G 0.38 deleterious(0.01) possibly_damaging(0.886) TCGA-CG-5721-01 1 1275137 1275137 C T DVL1 Missense_Mutation p.R322Q 0.23 deleterious(0.01) possibly_damaging(0.492) TCGA-CG-5721-01 1 12776279 12776279 C A AADACL3 5'UTR 0.17 TCGA-CG-5721-01 1 12856081 12856081 C A PRAMEF1 Missense_Mutation p.P454H 0.10 tolerated(0.2) probably_damaging(0.939) TCGA-CG-5721-01 1 12980059 12980059 T C PRAMEF7 Silent p.S417S 0.15 TCGA-CG-5721-01 1 13497743 13497743 T C PRAMEF16 Missense_Mutation p.V347A 0.14 tolerated(0.2) benign(0.001) TCGA-CG-5721-01 1 1389866 1389866 C T ATAD3C Missense_Mutation p.R122W 0.64 deleterious(0) benign(0.032) TCGA-CG-5721-01 1 14108560 14108560 A - PRDM2 Frame_Shift_Del p.N1426Ifs*3 0.18 TCGA-CG-5721-01 1 142713813 142713813 A G RP11-417J8.6 RNA 0.20 TCGA-CG-5721-01 1 144931587 144931587 A G PDE4DIP Intron 0.13 TCGA-CG-5721-01 1 145415465 145415465 G A HFE2 Missense_Mutation p.R95H 0.19 deleterious(0) probably_damaging(0.99) TCGA-CG-5721-01 1 145498816 145498816 T - LIX1L 3'UTR 0.26 TCGA-CG-5721-01 1 145534184 145534184 T C ITGA10 Silent p.G563G 0.23 TCGA-CG-5721-01 1 145580455 145580455 T C PIAS3 Intron 0.22 TCGA-CG-5721-01 1 145585737 145585737 C A PIAS3 3'UTR 0.26 TCGA-CG-5721-01 1 145811339 145811339 C T GPR89A Intron 0.18 TCGA-CG-5721-01 1 147096052 147096052 A G BCL9 Silent p.A1191A 0.07 TCGA-CG-5721-01 1 147120182 147120182 T C ACP6 Missense_Mutation p.T337A 0.17 deleterious(0.01) probably_damaging(0.933) TCGA-CG-5721-01 1 149858893 149858893 C T HIST2H2AC Silent p.S123S 0.15 TCGA-CG-5721-01 1 149859204 149859204 A G HIST2H2AB Missense_Mutation p.V88A 0.18 deleterious_low_confidence(0) possibly_damaging(0.813) TCGA-CG-5721-01 1 150235560 150235560 A G CA14 Missense_Mutation p.T228A 0.15 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 1 150445370 150445370 G A RPRD2 Missense_Mutation p.G1316R 0.16 deleterious_low_confidence(0) benign(0.342) TCGA-CG-5721-01 1 150484269 150484269 T C ECM1 Missense_Mutation p.C376R 0.10 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 1 150933482 150933482 G A SETDB1 Missense_Mutation p.A982T 0.18 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-CG-5721-01 1 151011305 151011305 G A BNIPL Missense_Mutation p.G79D 0.15 tolerated(0.07) possibly_damaging(0.873) TCGA-CG-5721-01 1 151019360 151019360 T C BNIPL 3'UTR 0.38 TCGA-CG-5721-01 1 151109535 151109535 C T SEMA6C Missense_Mutation p.V258I 0.21 deleterious(0.01) benign(0.086) TCGA-CG-5721-01 1 151149009 151149009 A G VPS72 3'UTR 0.26 TCGA-CG-5721-01 1 151259923 151259923 G C ZNF687 Missense_Mutation p.V386L 0.15 tolerated(0.26) benign(0.258) TCGA-CG-5721-01 1 151372168 151372168 G A PSMB4 Silent p.A35A 0.26 TCGA-CG-5721-01 1 151774479 151774479 C T LINGO4 Silent p.E234E 0.17 TCGA-CG-5721-01 1 152082769 152082769 C - TCHH Frame_Shift_Del p.G975Efs*30 0.31 TCGA-CG-5721-01 1 152129190 152129190 T C RPTN Missense_Mutation p.R129G 0.19 deleterious(0.02) benign(0.008) TCGA-CG-5721-01 1 152278828 152278828 T C FLG Missense_Mutation p.E2845G 0.08 benign(0.064) TCGA-CG-5721-01 1 152282840 152282840 A T FLG Missense_Mutation p.S1508T 0.21 benign(0.153) TCGA-CG-5721-01 1 152326143 152326143 A G FLG2 Silent p.A1373A 0.23 TCGA-CG-5721-01 1 152326301 152326301 T C FLG2 Missense_Mutation p.T1321A 0.16 benign(0) TCGA-CG-5721-01 1 152326625 152326625 C A FLG2 Missense_Mutation p.G1213C 0.17 unknown(0) TCGA-CG-5721-01 1 152648551 152648551 T C LCE2C Silent p.C20C 0.19 TCGA-CG-5721-01 1 153659753 153659753 C A NPR1 Silent p.R671R 0.25 TCGA-CG-5721-01 1 153908639 153908639 A G DENND4B Missense_Mutation p.L822P 0.36 deleterious(0.02) probably_damaging(0.998) TCGA-CG-5721-01 1 153955025 153955025 T C RAB13 Missense_Mutation p.M156V 0.18 tolerated(0.28) benign(0.001) TCGA-CG-5721-01 1 154185068 154185068 G A C1orf43 Missense_Mutation p.R125C 0.26 tolerated(0.14) benign(0.005) TCGA-CG-5721-01 1 154246038 154246038 G A HAX1 Missense_Mutation p.D94N 0.18 tolerated(0.12) benign(0.001) TCGA-CG-5721-01 1 154246292 154246292 G A HAX1 Missense_Mutation p.R120Q 0.23 tolerated(0.46) benign(0.013) TCGA-CG-5721-01 1 154458516 154458516 G A SHE Missense_Mutation p.R402C 0.20 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 1 154524643 154524643 C T UBE2Q1 Missense_Mutation p.A298T 0.19 tolerated(0.12) benign(0.01) TCGA-CG-5721-01 1 154525264 154525264 G A UBE2Q1 Silent p.D254D 0.16 TCGA-CG-5721-01 1 154569432 154569432 A T ADAR Missense_Mutation p.S707T 0.11 tolerated(0.48) benign(0.248) TCGA-CG-5721-01 1 154600361 154600361 G C ADAR Silent p.V38V 0.26 TCGA-CG-5721-01 1 154931981 154931981 T C PYGO2 Silent p.Q165Q 0.21 TCGA-CG-5721-01 1 154960959 154960959 G A FLAD1 Missense_Mutation p.V251I 0.11 tolerated(0.11) probably_damaging(0.98) TCGA-CG-5721-01 1 155170773 155170773 T C THBS3 Missense_Mutation p.N488S 0.18 deleterious(0) probably_damaging(0.983) TCGA-CG-5721-01 1 155255658 155255658 C T HCN3 Silent p.S460S 0.27 TCGA-CG-5721-01 1 155258286 155258286 G T HCN3 3'UTR 0.24 TCGA-CG-5721-01 1 155292385 155292385 A G RUSC1 Missense_Mutation p.D274G 0.18 deleterious_low_confidence(0.01) benign(0.05) TCGA-CG-5721-01 1 155300452 155300452 T C RUSC1 3'UTR 0.32 TCGA-CG-5721-01 1 155491319 155491319 T C ASH1L 5'UTR 0.18 TCGA-CG-5721-01 1 156108471 156108471 G A LMNA Missense_Mutation p.G631S 0.33 tolerated_low_confidence(1) benign(0.142) TCGA-CG-5721-01 1 156170077 156170077 G A SLC25A44 Missense_Mutation p.G147S 0.23 tolerated(0.15) benign(0.257) TCGA-CG-5721-01 1 156214025 156214025 T C PAQR6 Missense_Mutation p.Y228C 0.32 deleterious_low_confidence(0) unknown(0) TCGA-CG-5721-01 1 156351209 156351209 C T RHBG Missense_Mutation p.R249W 0.25 deleterious(0) probably_damaging(0.993) TCGA-CG-5721-01 1 156452281 156452281 T C MEF2D Missense_Mutation p.Y69C 0.21 deleterious(0) probably_damaging(0.997) TCGA-CG-5721-01 1 156499976 156499976 C T IQGAP3 Missense_Mutation p.R1442Q 0.46 deleterious(0.02) possibly_damaging(0.658) TCGA-CG-5721-01 1 156517928 156517928 C T IQGAP3 Silent p.R747R 0.20 TCGA-CG-5721-01 1 156532379 156532379 C T IQGAP3 Missense_Mutation p.V293I 0.25 tolerated(0.26) benign(0.013) TCGA-CG-5721-01 1 156694105 156694105 C - ISG20L2 Frame_Shift_Del p.H262Mfs*42 0.19 TCGA-CG-5721-01 1 156814367 156814367 C - INSRR Frame_Shift_Del p.G875Efs*82 0.23 TCGA-CG-5721-01 1 156914828 156914828 G - ARHGEF11 Frame_Shift_Del p.L992Wfs*15 0.24 TCGA-CG-5721-01 1 156955924 156955924 C T ARHGEF11 Missense_Mutation p.R25H 0.31 deleterious(0.04) benign(0.031) TCGA-CG-5721-01 1 1575796 1575796 C T CDK11B Missense_Mutation p.D368N 0.11 unknown(0) TCGA-CG-5721-01 1 157666960 157666960 T - FCRL3 Frame_Shift_Del p.R272Gfs*3 0.20 TCGA-CG-5721-01 1 157805670 157805672 CTT - CD5L In_Frame_Del p.E110del 0.26 TCGA-CG-5721-01 1 15817807 15817807 A G CELA2B Silent p.%3D 0.17 TCGA-CG-5721-01 1 15819329 15819329 C A CASP9 3'UTR 0.24 TCGA-CG-5721-01 1 158227593 158227594 TT - CD1A 3'UTR 0.17 TCGA-CG-5721-01 1 158262398 158262398 C A CD1C Missense_Mutation p.A208D 0.11 deleterious(0) probably_damaging(0.96) TCGA-CG-5721-01 1 158263003 158263003 A G CD1C Silent p.G297G 0.17 TCGA-CG-5721-01 1 158670434 158670434 G T OR6K2 Missense_Mutation p.S3R 0.26 tolerated(0.38) benign(0.002) TCGA-CG-5721-01 1 158687161 158687161 T A OR6K3 Missense_Mutation p.I249L 0.19 tolerated(1) benign(0.004) TCGA-CG-5721-01 1 158687464 158687464 A G OR6K3 Missense_Mutation p.S148P 0.21 deleterious(0.03) probably_damaging(0.991) TCGA-CG-5721-01 1 158725437 158725437 T - OR6K6 Frame_Shift_Del p.F279Lfs*9 0.20 TCGA-CG-5721-01 1 159163707 159163707 G A CADM3 Missense_Mutation p.V224I 0.18 deleterious(0.02) benign(0.341) TCGA-CG-5721-01 1 159284344 159284344 A G OR10J3 Missense_Mutation p.Y36H 0.18 deleterious(0) possibly_damaging(0.637) TCGA-CG-5721-01 1 159780002 159780002 A C FCRL6 Missense_Mutation p.K335N 0.13 deleterious(0) possibly_damaging(0.811) TCGA-CG-5721-01 1 159799703 159799703 G - SLAMF8 Frame_Shift_Del p.G31Afs*74 0.20 TCGA-CG-5721-01 1 159827580 159827580 A T VSIG8 Missense_Mutation p.S203T 0.17 deleterious_low_confidence(0) possibly_damaging(0.741) TCGA-CG-5721-01 1 159846559 159846559 A G CCDC19 Intron 0.08 TCGA-CG-5721-01 1 160063696 160063696 C A IGSF8 Missense_Mutation p.E236D 0.18 tolerated(0.22) benign(0.101) TCGA-CG-5721-01 1 160134082 160134082 G T ATP1A4 Silent p.V305V 0.18 TCGA-CG-5721-01 1 160267456 160267456 T C COPA Missense_Mutation p.N695S 0.17 deleterious(0.01) benign(0.12) TCGA-CG-5721-01 1 160268702 160268702 A G COPA Missense_Mutation p.V646A 0.18 deleterious(0) benign(0.082) TCGA-CG-5721-01 1 160276963 160276963 C T COPA Missense_Mutation p.R431Q 0.18 tolerated(0.11) benign(0.062) TCGA-CG-5721-01 1 160320035 160320035 A G NCSTN Missense_Mutation p.K193E 0.18 tolerated(0.14) benign(0.027) TCGA-CG-5721-01 1 16069351 16069351 T A TMEM82 Missense_Mutation p.V37D 0.30 deleterious(0) probably_damaging(0.986) TCGA-CG-5721-01 1 160718018 160718018 C T SLAMF7 Silent p.V30V 0.15 TCGA-CG-5721-01 1 160917764 160917764 G A ITLN2 Silent p.N260N 0.13 TCGA-CG-5721-01 1 161070003 161070003 G A KLHDC9 Missense_Mutation p.D347N 0.21 deleterious_low_confidence(0.01) benign(0.425) TCGA-CG-5721-01 1 161137126 161137126 T C PPOX Intron 0.14 TCGA-CG-5721-01 1 161559418 161559418 T C RP11-25K21.6 Intron 0.18 TCGA-CG-5721-01 1 16257562 16257562 A G SPEN Silent p.K1609K 0.33 TCGA-CG-5721-01 1 16271569 16271569 C T ZBTB17 Missense_Mutation p.E264K 0.38 deleterious_low_confidence(0.04) probably_damaging(0.935) TCGA-CG-5721-01 1 163315530 163315530 G T NUF2 Missense_Mutation p.Q290H 0.14 deleterious(0) probably_damaging(0.987) TCGA-CG-5721-01 1 1639006 1639006 C T CDK11A Missense_Mutation p.D363N 0.19 deleterious_low_confidence(0.02) unknown(0) TCGA-CG-5721-01 1 16462199 16462199 G - EPHA2 Frame_Shift_Del p.P460Rfs*33 0.20 TCGA-CG-5721-01 1 165386317 165386317 G A RXRG Missense_Mutation p.R195C 0.18 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 1 165632366 165632366 T C ALDH9A1 Missense_Mutation p.N493S 0.26 deleterious(0) probably_damaging(0.994) TCGA-CG-5721-01 1 16577504 16577504 C T FBXO42 Silent p.G605G 0.22 TCGA-CG-5721-01 1 166838708 166838708 C T TADA1 Missense_Mutation p.R69H 0.21 deleterious(0.01) probably_damaging(0.967) TCGA-CG-5721-01 1 166925999 166925999 T - ILDR2 Frame_Shift_Del p.N157Mfs*117 0.16 TCGA-CG-5721-01 1 166927241 166927241 G T ILDR2 Silent p.S48S 0.17 TCGA-CG-5721-01 1 167095407 167095407 G A DUSP27 Missense_Mutation p.E347K 0.31 deleterious(0) probably_damaging(0.998) TCGA-CG-5721-01 1 1685539 1685540 - G NADK Frame_Shift_Ins p.H496Pfs*23 0.21 TCGA-CG-5721-01 1 16895594 16895594 T C NBPF1 Missense_Mutation p.Q863R 0.06 tolerated(0.28) benign(0.084) TCGA-CG-5721-01 1 169677585 169677585 T C SELL Missense_Mutation p.K162E 0.23 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 1 169701051 169701051 C T SELE Missense_Mutation p.G152S 0.23 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 1 169771846 169771846 A G C1orf112 Missense_Mutation p.T51A 0.19 tolerated(0.48) benign(0.303) TCGA-CG-5721-01 1 169772333 169772333 T G C1orf112 Silent p.A65A 0.14 TCGA-CG-5721-01 1 170695482 170695482 T C PRRX1 Missense_Mutation p.V180A 0.26 tolerated(1) benign(0.11) TCGA-CG-5721-01 1 170695497 170695497 C T PRRX1 Missense_Mutation p.P185L 0.10 deleterious(0) possibly_damaging(0.603) TCGA-CG-5721-01 1 170705388 170705388 C T PRRX1 3'UTR 0.23 TCGA-CG-5721-01 1 171080111 171080111 A - FMO3 Frame_Shift_Del p.N268Tfs*4 0.20 TCGA-CG-5721-01 1 172558159 172558159 A G SUCO Missense_Mutation p.R640G 0.18 tolerated(0.51) benign(0) TCGA-CG-5721-01 1 173499145 173499145 G A SLC9C2 Missense_Mutation p.R738C 0.24 deleterious(0) possibly_damaging(0.66) TCGA-CG-5721-01 1 173726131 173726131 T C KLHL20 Silent p.S328S 0.17 TCGA-CG-5721-01 1 174927162 174927162 A G RABGAP1L 3'UTR 0.14 TCGA-CG-5721-01 1 174975919 174975919 A G CACYBP Missense_Mutation p.T92A 0.18 tolerated(0.06) benign(0.1) TCGA-CG-5721-01 1 174987603 174987603 A G MRPS14 Missense_Mutation p.L52P 0.20 deleterious(0) probably_damaging(0.954) TCGA-CG-5721-01 1 175087805 175087805 C T TNN Missense_Mutation p.T832M 0.25 deleterious(0) probably_damaging(0.996) TCGA-CG-5721-01 1 175113675 175113675 A G TNN Missense_Mutation p.K1250E 0.15 deleterious(0) probably_damaging(0.978) TCGA-CG-5721-01 1 175299227 175299227 C T TNR Missense_Mutation p.S1259N 0.19 tolerated(0.19) benign(0.063) TCGA-CG-5721-01 1 175299353 175299353 C A TNR Missense_Mutation p.R1217M 0.10 deleterious(0) possibly_damaging(0.776) TCGA-CG-5721-01 1 176085813 176085813 T C RFWD2 Missense_Mutation p.I325V 0.22 tolerated(0.3) benign(0.02) TCGA-CG-5721-01 1 176145092 176145092 A G RFWD2 Silent p.C173C 0.13 TCGA-CG-5721-01 1 176563808 176563808 C T PAPPA2 Silent p.H356H 0.18 TCGA-CG-5721-01 1 177245384 177245384 G A BRINP2 Missense_Mutation p.A276T 0.20 deleterious(0.02) possibly_damaging(0.449) TCGA-CG-5721-01 1 177249772 177249772 C G BRINP2 Missense_Mutation p.A487G 0.14 tolerated(0.3) benign(0.016) TCGA-CG-5721-01 1 17749323 17749323 T C RCC2 Missense_Mutation p.E178G 0.19 deleterious(0.01) benign(0.438) TCGA-CG-5721-01 1 179523744 179523744 T C AXDND1 3'UTR 0.18 TCGA-CG-5721-01 1 179561744 179561744 G T TDRD5 5'UTR 0.22 TCGA-CG-5721-01 1 180064806 180064806 A - CEP350 Frame_Shift_Del p.N2889Ifs*10 0.23 TCGA-CG-5721-01 1 18149614 18149614 G A ACTL8 Silent p.P37P 0.21 TCGA-CG-5721-01 1 181727985 181727985 T C CACNA1E Missense_Mutation p.V1529A 0.20 deleterious(0) benign(0.013) TCGA-CG-5721-01 1 182641997 182641997 A T RGS8 5'UTR 0.17 TCGA-CG-5721-01 1 182798102 182798102 T - NPL 3'UTR 0.11 TCGA-CG-5721-01 1 182835644 182835644 A - DHX9 Frame_Shift_Del p.S468Afs*19 0.10 TCGA-CG-5721-01 1 182836115 182836115 A G DHX9 Silent p.L498L 0.20 TCGA-CG-5721-01 1 183596507 183596507 A G ARPC5 3'UTR 0.24 TCGA-CG-5721-01 1 183881241 183881241 A G RGL1 Missense_Mutation p.T565A 0.26 tolerated(0.9) benign(0) TCGA-CG-5721-01 1 183885723 183885723 C T RGL1 Missense_Mutation p.T666M 0.17 tolerated(0.06) possibly_damaging(0.836) TCGA-CG-5721-01 1 185137497 185137497 A G SWT1 Missense_Mutation p.Y64C 0.19 tolerated(0.12) benign(0.048) TCGA-CG-5721-01 1 185962440 185962440 T C HMCN1 Silent p.H1168H 0.19 TCGA-CG-5721-01 1 186281960 186281960 A G PRG4 Missense_Mutation p.T1351A 0.17 unknown(0) TCGA-CG-5721-01 1 186313637 186313637 A G TPR Missense_Mutation p.L1096P 0.17 probably_damaging(0.928) TCGA-CG-5721-01 1 186413212 186413213 - A PDC Frame_Shift_Ins p.A214Cfs*10 0.16 TCGA-CG-5721-01 1 190067644 190067644 T C BRINP3 Missense_Mutation p.D602G 0.19 deleterious(0.01) probably_damaging(0.996) TCGA-CG-5721-01 1 19018395 19018395 A G PAX7 Missense_Mutation p.Y245C 0.12 deleterious(0) probably_damaging(0.964) TCGA-CG-5721-01 1 19029776 19029776 G T PAX7 Missense_Mutation p.G381C 0.17 tolerated_low_confidence(0.06) probably_damaging(0.99) TCGA-CG-5721-01 1 19201970 19201970 A G ALDH4A1 Missense_Mutation p.Y456H 0.10 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 1 192547467 192547467 A G RGS1 Silent p.K132K 0.21 TCGA-CG-5721-01 1 192780688 192780688 A - RGS2 Frame_Shift_Del p.K201Sfs*14 0.08 TCGA-CG-5721-01 1 193149827 193149827 T C B3GALT2 Missense_Mutation p.N289S 0.15 tolerated(0.18) probably_damaging(0.934) TCGA-CG-5721-01 1 19449347 19449347 A T UBR4 Missense_Mutation p.Y3266N 0.14 probably_damaging(0.916) TCGA-CG-5721-01 1 196928105 196928105 A G CFHR2 Missense_Mutation p.I236M 0.21 tolerated(0.3) benign(0.144) TCGA-CG-5721-01 1 197026524 197026524 G A F13B Missense_Mutation p.R293C 0.16 deleterious(0) probably_damaging(0.967) TCGA-CG-5721-01 1 197097731 197097731 C T ASPM Missense_Mutation p.R942H 0.16 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 1 197157461 197157461 G A ZBTB41 Missense_Mutation p.R503W 0.18 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 1 197168674 197168674 C T ZBTB41 Silent p.E310E 0.24 TCGA-CG-5721-01 1 197169174 197169174 A G ZBTB41 Missense_Mutation p.Y144H 0.19 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CG-5721-01 1 198492450 198492450 A G ATP6V1G3 3'UTR 0.23 TCGA-CG-5721-01 1 198668766 198668766 G A PTPRC Silent p.T124T 0.18 TCGA-CG-5721-01 1 198668804 198668804 A G PTPRC Missense_Mutation p.N137S 0.16 tolerated(0.27) benign(0.001) TCGA-CG-5721-01 1 198687384 198687384 G A PTPRC Missense_Mutation p.D538N 0.19 tolerated(0.42) benign(0.009) TCGA-CG-5721-01 1 200818150 200818150 G A CAMSAP2 Silent p.V751V 0.22 TCGA-CG-5721-01 1 200827020 200827020 A - CAMSAP2 Frame_Shift_Del p.M1426* 0.21 TCGA-CG-5721-01 1 201019592 201019593 - G CACNA1S Frame_Shift_Ins p.R1389Pfs*13 0.21 TCGA-CG-5721-01 1 201052326 201052326 G A CACNA1S Missense_Mutation p.H453Y 0.25 deleterious(0.03) benign(0.177) TCGA-CG-5721-01 1 201058550 201058550 C T CACNA1S Missense_Mutation p.A246T 0.18 tolerated(0.06) benign(0.034) TCGA-CG-5721-01 1 201617978 201617978 C T NAV1 Missense_Mutation p.A61V 0.28 tolerated(0.11) benign(0.025) TCGA-CG-5721-01 1 201751603 201751603 G A NAV1 Missense_Mutation p.A655T 0.23 tolerated(0.41) benign(0.001) TCGA-CG-5721-01 1 201983146 201983146 C T ELF3 Missense_Mutation p.A332V 0.23 deleterious(0) probably_damaging(0.998) TCGA-CG-5721-01 1 202123315 202123315 T G PTPN7 Missense_Mutation p.E307A 0.17 tolerated(0.1) probably_damaging(0.99) TCGA-CG-5721-01 1 202407353 202407353 A - PPP1R12B Intron 0.26 TCGA-CG-5721-01 1 202700079 202700079 C T KDM5B Silent p.Q1378Q 0.22 TCGA-CG-5721-01 1 202702811 202702811 A G KDM5B Silent p.I1209I 0.24 TCGA-CG-5721-01 1 203012612 203012612 C T PPFIA4 Missense_Mutation p.R108W 0.17 deleterious(0) probably_damaging(0.99) TCGA-CG-5721-01 1 203024745 203024745 A G PPFIA4 Missense_Mutation p.K166R 0.19 tolerated(0.91) benign(0.026) TCGA-CG-5721-01 1 203317279 203317279 A G FMOD Silent p.D40D 0.15 TCGA-CG-5721-01 1 204236645 204236645 G A PLEKHA6 Missense_Mutation p.R80C 0.15 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 1 204418333 204418333 G A PIK3C2B Missense_Mutation p.P776S 0.19 tolerated(0.18) probably_damaging(1) TCGA-CG-5721-01 1 204937448 204937448 C T NFASC Missense_Mutation p.R260C 0.17 deleterious(0) probably_damaging(0.99) TCGA-CG-5721-01 1 204945914 204945914 A G NFASC Missense_Mutation p.T608A 0.15 deleterious(0) probably_damaging(0.921) TCGA-CG-5721-01 1 205052683 205052683 A G TMEM81 Nonstop_Mutation p.*256Rext*23 0.23 TCGA-CG-5721-01 1 205074295 205074295 A G RBBP5 Missense_Mutation p.W74R 0.21 deleterious(0) probably_damaging(0.998) TCGA-CG-5721-01 1 205312636 205312636 C T KLHDC8A Missense_Mutation p.V33I 0.18 tolerated(0.12) benign(0.013) TCGA-CG-5721-01 1 205739514 205739514 A G RAB7L1 Missense_Mutation p.Y190H 0.23 tolerated(0.55) possibly_damaging(0.856) TCGA-CG-5721-01 1 206566999 206566999 A G SRGAP2 Missense_Mutation p.Y181C 0.07 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 1 207639972 207639972 A G CR2 Missense_Mutation p.T54A 0.17 tolerated(1) benign(0) TCGA-CG-5721-01 1 207679344 207679344 T C CR1 Missense_Mutation p.C73R 0.18 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 1 207850873 207850873 A - CR1L Frame_Shift_Del p.N81Tfs*23 0.18 TCGA-CG-5721-01 1 207867785 207867785 C T CR1L Missense_Mutation p.T184I 0.24 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 1 207867788 207867788 A G CR1L Missense_Mutation p.Y185C 0.05 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 1 207940424 207940424 A G CD46 Missense_Mutation p.Y247C 0.20 tolerated(0.13) benign(0.263) TCGA-CG-5721-01 1 208206749 208206749 T C PLXNA2 Missense_Mutation p.N1657S 0.14 deleterious(0.02) probably_damaging(0.982) TCGA-CG-5721-01 1 209803132 209803132 T A LAMB3 Missense_Mutation p.H361L 0.21 tolerated(0.28) benign(0.16) TCGA-CG-5721-01 1 209964008 209964008 T C IRF6 Missense_Mutation p.M298V 0.18 deleterious(0.01) possibly_damaging(0.869) TCGA-CG-5721-01 1 209964012 209964012 G A IRF6 Silent p.D296D 0.20 TCGA-CG-5721-01 1 209964020 209964020 G A IRF6 Silent p.L294L 0.20 TCGA-CG-5721-01 1 21009336 21009336 G A KIF17 Missense_Mutation p.A758V 0.15 deleterious(0.05) probably_damaging(0.952) TCGA-CG-5721-01 1 21083671 21083671 C A HP1BP3 Silent p.S323S 0.17 TCGA-CG-5721-01 1 21205843 21205843 G A EIF4G3 Silent p.Y815Y 0.16 TCGA-CG-5721-01 1 212142038 212142038 T C INTS7 Silent p.T609T 0.21 TCGA-CG-5721-01 1 212161324 212161324 G A INTS7 Nonsense_Mutation p.Q301* 0.13 TCGA-CG-5721-01 1 2125140 2125140 C T C1orf86 Silent p.P136P 0.24 TCGA-CG-5721-01 1 212538409 212538409 T C TMEM206 3'UTR 0.14 TCGA-CG-5721-01 1 212911845 212911845 T - NSL1 Frame_Shift_Del p.T251Pfs*6 0.18 TCGA-CG-5721-01 1 215345490 215345490 A G KCNK2 Missense_Mutation p.T263A 0.17 deleterious(0) probably_damaging(0.977) TCGA-CG-5721-01 1 215802205 215802205 A G USH2A Missense_Mutation p.L5157S 0.22 benign(0.035) TCGA-CG-5721-01 1 215953368 215953368 T C USH2A Missense_Mutation p.T3586A 0.15 benign(0.016) TCGA-CG-5721-01 1 216405425 216405425 T C USH2A Missense_Mutation p.T955A 0.16 benign(0.005) TCGA-CG-5721-01 1 216497021 216497021 G A USH2A Missense_Mutation p.R449C 0.21 benign(0.052) TCGA-CG-5721-01 1 216850574 216850574 T C ESRRG Missense_Mutation p.S111G 0.23 tolerated(0.13) probably_damaging(0.961) TCGA-CG-5721-01 1 217783709 217783709 A G GPATCH2 Missense_Mutation p.M351T 0.09 tolerated(0.41) benign(0) TCGA-CG-5721-01 1 218614599 218614599 C T TGFB2 Silent p.C408C 0.22 TCGA-CG-5721-01 1 21938061 21938061 G T RAP1GAP Missense_Mutation p.L307M 0.24 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 1 220170682 220170682 G T EPRS Silent p.T728T 0.23 TCGA-CG-5721-01 1 220826557 220826557 A G MARK1 Silent p.E617E 0.21 TCGA-CG-5721-01 1 220870179 220870179 G A C1orf115 3'UTR 0.24 TCGA-CG-5721-01 1 22169859 22169859 C T HSPG2 Missense_Mutation p.G2897R 0.19 possibly_damaging(0.595) TCGA-CG-5721-01 1 22179505 22179505 C T HSPG2 Silent p.G2166G 0.21 TCGA-CG-5721-01 1 223285544 223285544 G T TLR5 Missense_Mutation p.P277H 0.20 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 1 223437982 223437982 A - SUSD4 Frame_Shift_Del p.A239Lfs*11 0.14 TCGA-CG-5721-01 1 223567614 223567614 G A C1orf65 Missense_Mutation p.R266H 0.17 deleterious(0.01) probably_damaging(0.984) TCGA-CG-5721-01 1 224804920 224804920 T C CNIH3 Missense_Mutation p.V15A 0.16 deleterious(0) benign(0.307) TCGA-CG-5721-01 1 224868721 224868721 T C CNIH3 Missense_Mutation p.V48A 0.21 tolerated(0.53) benign(0.002) TCGA-CG-5721-01 1 224922301 224922301 C A CNIH3 Silent p.A116A 0.18 TCGA-CG-5721-01 1 225142738 225142738 A T DNAH14 Missense_Mutation p.E52V 0.19 deleterious(0) possibly_damaging(0.582) TCGA-CG-5721-01 1 226552822 226552822 G A PARP1 Missense_Mutation p.R847C 0.21 deleterious(0) probably_damaging(0.983) TCGA-CG-5721-01 1 227216861 227216861 C T CDC42BPA Missense_Mutation p.R1275H 0.14 tolerated(0.39) benign(0.111) TCGA-CG-5721-01 1 227335223 227335223 A T CDC42BPA Missense_Mutation p.I244N 0.23 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 1 227842264 227842264 A G ZNF678 Missense_Mutation p.N105D 0.19 tolerated(0.1) benign(0.023) TCGA-CG-5721-01 1 227921375 227921375 A G JMJD4 Missense_Mutation p.F234L 0.14 tolerated(0.33) benign(0.03) TCGA-CG-5721-01 1 228238516 228238516 A G WNT3A Missense_Mutation p.D158G 0.14 deleterious(0.01) benign(0.098) TCGA-CG-5721-01 1 228333221 228333221 G C GUK1 Missense_Mutation p.G24A 0.18 tolerated(0.1) possibly_damaging(0.714) TCGA-CG-5721-01 1 228346175 228346175 T C GJC2 Missense_Mutation p.V239A 0.14 deleterious(0) probably_damaging(0.989) TCGA-CG-5721-01 1 228363092 228363092 G A IBA57 Missense_Mutation p.V317M 0.19 deleterious(0.04) possibly_damaging(0.688) TCGA-CG-5721-01 1 228433238 228433238 C T OBSCN Silent p.D1294D 0.21 TCGA-CG-5721-01 1 228437904 228437904 C T OBSCN Silent p.A1516A 0.11 TCGA-CG-5721-01 1 228456347 228456347 T C OBSCN Missense_Mutation p.Y1844H 0.21 probably_damaging(0.997) TCGA-CG-5721-01 1 228509588 228509588 C T OBSCN Missense_Mutation p.R5973W 0.17 benign(0.048) TCGA-CG-5721-01 1 22902826 22902826 C T EPHA8 Silent p.D92D 0.20 TCGA-CG-5721-01 1 22927263 22927263 C T EPHA8 Missense_Mutation p.A833V 0.16 deleterious(0) possibly_damaging(0.805) TCGA-CG-5721-01 1 231064815 231064815 T C TTC13 Missense_Mutation p.H442R 0.17 tolerated(0.24) probably_damaging(0.978) TCGA-CG-5721-01 1 231487299 231487299 T G SPRTN Missense_Mutation p.L234V 0.19 tolerated(0.53) benign(0.013) TCGA-CG-5721-01 1 231673007 231673007 T C TSNAX Missense_Mutation p.V57A 0.23 deleterious(0) probably_damaging(0.984) TCGA-CG-5721-01 1 232538136 232538136 A G SIPA1L2 Splice_Site p.X1674_splice 0.27 TCGA-CG-5721-01 1 232650649 232650649 A G SIPA1L2 Missense_Mutation p.V146A 0.19 tolerated(0.55) benign(0.028) TCGA-CG-5721-01 1 233394715 233394715 C T PCNXL2 Missense_Mutation p.R298Q 0.10 tolerated_low_confidence(1) benign(0) TCGA-CG-5721-01 1 2337210 2337210 G A PEX10 Missense_Mutation p.R346C 0.31 deleterious(0) probably_damaging(0.984) TCGA-CG-5721-01 1 234563331 234563331 C T TARBP1 Missense_Mutation p.R1081H 0.21 deleterious(0) probably_damaging(0.991) TCGA-CG-5721-01 1 234565023 234565023 C T TARBP1 Silent p.A973A 0.19 TCGA-CG-5721-01 1 23520184 23520184 G A HTR1D Missense_Mutation p.R177W 0.31 deleterious(0) probably_damaging(0.998) TCGA-CG-5721-01 1 235324296 235324296 T C RBM34 Missense_Mutation p.H47R 0.48 tolerated(1) benign(0) TCGA-CG-5721-01 1 235658060 235658060 T C B3GALNT2 Missense_Mutation p.H64R 0.20 deleterious(0.03) benign(0.005) TCGA-CG-5721-01 1 235827885 235827885 T C LYST Missense_Mutation p.N3692S 0.23 deleterious(0) probably_damaging(0.978) TCGA-CG-5721-01 1 235922883 235922883 A G LYST Silent p.N2090N 0.17 TCGA-CG-5721-01 1 236148697 236148697 T C NID1 Missense_Mutation p.T1013A 0.22 tolerated(0.53) benign(0.001) TCGA-CG-5721-01 1 23637458 23637458 T C HNRNPR Missense_Mutation p.Y467C 0.20 tolerated(0.17) unknown(0) TCGA-CG-5721-01 1 236647566 236647566 A G EDARADD 3'Flank 0.17 TCGA-CG-5721-01 1 236914881 236914881 A G ACTN2 Missense_Mutation p.N590D 0.21 tolerated(0.49) benign(0.021) TCGA-CG-5721-01 1 236995292 236995292 T C MTR Missense_Mutation p.Y368H 0.10 tolerated(0.24) benign(0.001) TCGA-CG-5721-01 1 237016301 237016301 T C MTR Silent p.D622D 0.14 TCGA-CG-5721-01 1 237838135 237838135 T A RYR2 Missense_Mutation p.I2940N 0.12 possibly_damaging(0.723) TCGA-CG-5721-01 1 240071898 240071898 T C CHRM3 Silent p.L383L 0.20 TCGA-CG-5721-01 1 240286491 240286491 T C FMN2 Missense_Mutation p.L543S 0.18 unknown(0) TCGA-CG-5721-01 1 24077589 24077589 A G TCEB3 Missense_Mutation p.Y191C 0.25 deleterious(0.03) probably_damaging(0.922) TCGA-CG-5721-01 1 240966228 240966228 C T RGS7 Silent p.Q445Q 0.18 TCGA-CG-5721-01 1 242511481 242511481 T A PLD5 Missense_Mutation p.I85F 0.19 deleterious(0) probably_damaging(0.998) TCGA-CG-5721-01 1 244218042 244218042 T A ZBTB18 Missense_Mutation p.H322Q 0.13 tolerated(0.64) benign(0.013) TCGA-CG-5721-01 1 244528019 244528019 T C C1orf100 Missense_Mutation p.L6P 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-CG-5721-01 1 247013668 247013668 T C AHCTF1 Silent p.E1889E 0.23 TCGA-CG-5721-01 1 247051505 247051505 C T AHCTF1 Missense_Mutation p.V776I 0.14 tolerated(1) benign(0.003) TCGA-CG-5721-01 1 247150946 247150946 T C ZNF695 Missense_Mutation p.T291A 0.21 tolerated(0.08) probably_damaging(0.992) TCGA-CG-5721-01 1 247319909 247319909 T - ZNF124 Frame_Shift_Del p.T277Lfs*31 0.20 TCGA-CG-5721-01 1 24776017 24776017 T C NIPAL3 Silent p.G147G 0.20 TCGA-CG-5721-01 1 24795767 24795767 T C NIPAL3 3'UTR 0.38 TCGA-CG-5721-01 1 248005113 248005113 A G OR11L1 Missense_Mutation p.V29A 0.14 tolerated(0.56) benign(0.001) TCGA-CG-5721-01 1 248201952 248201952 C A OR2L2 Missense_Mutation p.P128H 0.18 deleterious(0) probably_damaging(0.987) TCGA-CG-5721-01 1 248263216 248263216 T A OR2L13 Missense_Mutation p.V180D 0.18 deleterious(0) possibly_damaging(0.903) TCGA-CG-5721-01 1 248616758 248616758 G A OR2T2 Silent p.T220T 0.22 TCGA-CG-5721-01 1 248685072 248685072 A G OR2G6 Missense_Mutation p.N42S 0.19 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 1 248756250 248756250 A G OR2T10 Missense_Mutation p.S274P 0.17 deleterious(0) benign(0.007) TCGA-CG-5721-01 1 2520904 2520904 C T FAM213B 3'UTR 0.19 TCGA-CG-5721-01 1 25678158 25678158 A G TMEM50A Missense_Mutation p.Y83C 0.17 deleterious(0) probably_damaging(0.998) TCGA-CG-5721-01 1 25715467 25715467 C T RHCE Silent p.P313P 0.22 TCGA-CG-5721-01 1 25775373 25775373 G A TMEM57 Nonsense_Mutation p.W99* 0.24 TCGA-CG-5721-01 1 25812245 25812245 A G TMEM57 Silent p.E485E 0.22 TCGA-CG-5721-01 1 26135246 26135246 A G SEPN1 Missense_Mutation p.N238S 0.16 tolerated(0.09) possibly_damaging(0.556) TCGA-CG-5721-01 1 26156176 26156176 A G MTFR1L Missense_Mutation p.S210G 0.22 deleterious(0.02) benign(0.096) TCGA-CG-5721-01 1 26162053 26162053 T C AUNIP Missense_Mutation p.T169A 0.19 tolerated(1) benign(0) TCGA-CG-5721-01 1 26228173 26228173 A G STMN1 Missense_Mutation p.S63P 0.13 tolerated(0.06) benign(0.11) TCGA-CG-5721-01 1 26517331 26517331 G A CATSPER4 Silent p.A71A 0.21 TCGA-CG-5721-01 1 26582109 26582109 A G CEP85 Missense_Mutation p.Y219C 0.21 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 1 26751895 26751895 C T LIN28A Silent p.T110T 0.20 TCGA-CG-5721-01 1 27056058 27056058 A - ARID1A Intron 0.24 TCGA-CG-5721-01 1 27057924 27057924 C - ARID1A Frame_Shift_Del p.Q546Rfs*73 0.26 TCGA-CG-5721-01 1 27278358 27278358 A G C1orf172 Missense_Mutation p.Y172H 0.14 tolerated(0.07) probably_damaging(0.998) TCGA-CG-5721-01 1 27609836 27609836 G A WDTC1 Missense_Mutation p.A63T 0.24 deleterious(0) probably_damaging(0.935) TCGA-CG-5721-01 1 27706499 27706499 G A CD164L2 3'UTR 0.20 TCGA-CG-5721-01 1 27744873 27744873 G A WASF2 Nonsense_Mutation p.Q106* 0.17 TCGA-CG-5721-01 1 27875206 27875206 C T AHDC1 Missense_Mutation p.V1141M 0.21 tolerated(0.06) possibly_damaging(0.791) TCGA-CG-5721-01 1 28209163 28209163 C T THEMIS2 Missense_Mutation p.A443V 0.29 tolerated(0.28) benign(0.052) TCGA-CG-5721-01 1 28212500 28212500 A G THEMIS2 3'UTR 0.17 TCGA-CG-5721-01 1 28241094 28241094 C A RPA2 5'UTR 0.22 TCGA-CG-5721-01 1 28862498 28862498 C T RCC1 Silent p.G290G 0.15 TCGA-CG-5721-01 1 29041308 29041308 T C GMEB1 3'UTR 0.24 TCGA-CG-5721-01 1 29070470 29070470 G A YTHDF2 Missense_Mutation p.R563H 0.27 deleterious(0) possibly_damaging(0.885) TCGA-CG-5721-01 1 29095518 29095518 A - YTHDF2 3'UTR 0.19 TCGA-CG-5721-01 1 29642617 29642617 G A PTPRU Missense_Mutation p.R1166H 0.24 deleterious(0) possibly_damaging(0.72) TCGA-CG-5721-01 1 31532150 31532150 C T PUM1 Silent p.Q88Q 0.23 TCGA-CG-5721-01 1 31838696 31838696 G A FABP3 3'UTR 0.22 TCGA-CG-5721-01 1 31899570 31899570 A G SERINC2 Missense_Mutation p.Y236C 0.14 deleterious(0) probably_damaging(0.994) TCGA-CG-5721-01 1 32118150 32118150 A G COL16A1 3'UTR 0.21 TCGA-CG-5721-01 1 32221679 32221679 G A BAI2 Silent p.P253P 0.23 TCGA-CG-5721-01 1 32256573 32256573 C - SPOCD1 Frame_Shift_Del p.R1095Gfs*32 0.29 TCGA-CG-5721-01 1 32667684 32667684 C T CCDC28B Missense_Mutation p.R50W 0.18 deleterious(0) benign(0.026) TCGA-CG-5721-01 1 32673020 32673020 C T IQCC Silent p.D326D 0.31 TCGA-CG-5721-01 1 32694367 32694367 C T EIF3I Missense_Mutation p.R227W 0.25 deleterious(0.01) possibly_damaging(0.792) TCGA-CG-5721-01 1 32796452 32796452 G A HDAC1 Missense_Mutation p.V308I 0.22 deleterious(0) probably_damaging(0.935) TCGA-CG-5721-01 1 32801637 32801637 T C MARCKSL1 5'UTR 0.17 TCGA-CG-5721-01 1 32842196 32842196 T C BSDC1 Missense_Mutation p.T292A 0.21 tolerated(0.13) benign(0.175) TCGA-CG-5721-01 1 33117607 33117607 A G RBBP4 Missense_Mutation p.T37A 0.22 deleterious(0.01) benign(0.17) TCGA-CG-5721-01 1 33360402 33360402 T C TMEM54 3'UTR 0.18 TCGA-CG-5721-01 1 33415365 33415365 T C RNF19B Missense_Mutation p.I216V 0.17 tolerated(0.06) probably_damaging(0.97) TCGA-CG-5721-01 1 3342703 3342703 C T PRDM16 Silent p.D1066D 0.23 TCGA-CG-5721-01 1 33956657 33956657 G A ZSCAN20 Missense_Mutation p.E267K 0.21 tolerated(0.13) benign(0) TCGA-CG-5721-01 1 33956724 33956724 A T ZSCAN20 Missense_Mutation p.D289V 0.11 tolerated(0.15) benign(0.424) TCGA-CG-5721-01 1 33960491 33960491 T C ZSCAN20 Silent p.A849A 0.23 TCGA-CG-5721-01 1 34128586 34128586 G - CSMD2 Frame_Shift_Del p.L1347Cfs*80 0.19 TCGA-CG-5721-01 1 3417557 3417557 C T MEGF6 Missense_Mutation p.G850R 0.27 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 1 3425206 3425206 C T MEGF6 Missense_Mutation p.D526N 0.21 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 1 34383804 34383804 T C CSMD2 Missense_Mutation p.T231A 0.14 tolerated(0.1) possibly_damaging(0.641) TCGA-CG-5721-01 1 34383824 34383824 T C CSMD2 Missense_Mutation p.N224S 0.13 tolerated(0.13) possibly_damaging(0.887) TCGA-CG-5721-01 1 35226975 35226975 G T GJB4 Silent p.A40A 0.17 TCGA-CG-5721-01 1 35250706 35250706 A G GJB3 Missense_Mutation p.K115E 0.09 tolerated(0.16) benign(0.092) TCGA-CG-5721-01 1 35260075 35260075 A G GJA4 Silent p.T87T 0.19 TCGA-CG-5721-01 1 35365852 35365852 C - DLGAP3 Frame_Shift_Del p.G377Vfs*91 0.34 TCGA-CG-5721-01 1 3544202 3544202 A G TPRG1L Silent p.T203T 0.10 TCGA-CG-5721-01 1 3547395 3547395 T C WRAP73 3'UTR 0.23 TCGA-CG-5721-01 1 35657105 35657106 AA - SFPQ Frame_Shift_Del p.L285Efs*22 0.14 TCGA-CG-5721-01 1 35836080 35836080 A - ZMYM4 Frame_Shift_Del p.I347Sfs*51 0.20 TCGA-CG-5721-01 1 35864507 35864507 T C ZMYM4 Missense_Mutation p.V1099A 0.22 tolerated(0.08) benign(0.28) TCGA-CG-5721-01 1 36202565 36202565 T C CLSPN Missense_Mutation p.T1287A 0.20 tolerated(0.06) probably_damaging(0.94) TCGA-CG-5721-01 1 36358271 36358271 A G AGO1 Missense_Mutation p.N108S 0.19 tolerated(1) benign(0) TCGA-CG-5721-01 1 36367936 36367936 C T AGO1 Silent p.L465L 0.24 TCGA-CG-5721-01 1 36557305 36557305 G A ADPRHL2 Missense_Mutation p.C132Y 0.09 tolerated(0.44) benign(0.004) TCGA-CG-5721-01 1 36602838 36602838 C T TRAPPC3 Missense_Mutation p.R170Q 0.26 tolerated(0.29) possibly_damaging(0.584) TCGA-CG-5721-01 1 36645665 36645665 A G MAP7D1 Missense_Mutation p.T838A 0.15 unknown(0) TCGA-CG-5721-01 1 3679950 3679950 G A CCDC27 Silent p.L411L 0.20 TCGA-CG-5721-01 1 36940985 36940985 G A CSF3R Silent p.R118R 0.26 TCGA-CG-5721-01 1 38005863 38005863 T C SNIP1 Missense_Mutation p.Y274C 0.24 tolerated(0.06) probably_damaging(0.954) TCGA-CG-5721-01 1 38056365 38056365 A G GNL2 Missense_Mutation p.V109A 0.22 deleterious(0) probably_damaging(0.988) TCGA-CG-5721-01 1 38056409 38056409 T - GNL2 Frame_Shift_Del p.K94Nfs*10 0.19 TCGA-CG-5721-01 1 3809519 3809519 T C C1orf174 Silent p.R19R 0.26 TCGA-CG-5721-01 1 38227235 38227235 G A EPHA10 Missense_Mutation p.S231F 0.23 deleterious(0) probably_damaging(0.992) TCGA-CG-5721-01 1 38511620 38511620 G A POU3F1 Missense_Mutation p.R266C 0.15 deleterious(0) probably_damaging(0.99) TCGA-CG-5721-01 1 39765930 39765930 G A MACF1 Missense_Mutation p.V849I 0.20 benign(0.414) TCGA-CG-5721-01 1 39920622 39920622 G A MACF1 Silent p.T4917T 0.14 TCGA-CG-5721-01 1 39950380 39950380 A G MACF1 Silent p.T5338T 0.17 TCGA-CG-5721-01 1 39951359 39951359 G - MACF1 Frame_Shift_Del p.G5397Afs*9 0.15 TCGA-CG-5721-01 1 40029377 40029377 G A PABPC4 Missense_Mutation p.A526V 0.13 tolerated(0.37) benign(0.045) TCGA-CG-5721-01 1 40038101 40038101 A G PABPC4 Silent p.D117D 0.15 TCGA-CG-5721-01 1 40362931 40362931 A G MYCL 3'UTR 0.17 TCGA-CG-5721-01 1 40661362 40661362 T C RLF Missense_Mutation p.V178A 0.17 deleterious(0) benign(0.155) TCGA-CG-5721-01 1 40773421 40773421 G - COL9A2 Frame_Shift_Del p.P303Qfs*15 0.13 TCGA-CG-5721-01 1 41012267 41012267 A C ZNF684 Missense_Mutation p.K91T 0.15 tolerated(0.07) benign(0.209) TCGA-CG-5721-01 1 41486096 41486096 C T SLFNL1 Silent p.A79A 0.17 TCGA-CG-5721-01 1 43748598 43748598 C T C1orf210 Missense_Mutation p.R67H 0.16 tolerated(0.2) benign(0.016) TCGA-CG-5721-01 1 43773195 43773195 T C TIE1 Missense_Mutation p.Y289H 0.13 deleterious(0.01) probably_damaging(0.997) TCGA-CG-5721-01 1 43785145 43785145 C T TIE1 Missense_Mutation p.R1018C 0.18 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 1 43893400 43893400 C T SZT2 Silent p.I1209I 0.08 TCGA-CG-5721-01 1 44432664 44432664 T C IPO13 Silent p.G862G 0.15 TCGA-CG-5721-01 1 44437671 44437671 C T DPH2 Missense_Mutation p.A366V 0.20 tolerated(1) benign(0.017) TCGA-CG-5721-01 1 44456112 44456113 - G B4GALT2 Frame_Shift_Ins p.*402Lfs*? 0.27 TCGA-CG-5721-01 1 44467092 44467094 GAA - SLC6A9 In_Frame_Del p.F463del 0.15 TCGA-CG-5721-01 1 44804743 44804743 A G ERI3 Missense_Mutation p.C155R 0.14 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 1 44804978 44804978 T C ERI3 Silent p.G76G 0.19 TCGA-CG-5721-01 1 45250930 45250930 G A BEST4 Silent p.G254G 0.25 TCGA-CG-5721-01 1 45270026 45270026 C - PLK3 Frame_Shift_Del p.L455Wfs*90 0.25 TCGA-CG-5721-01 1 45293332 45293332 T C PTCH2 Missense_Mutation p.T705A 0.25 tolerated(0.06) benign(0.18) TCGA-CG-5721-01 1 45794038 45794038 C T HPDL 3'UTR 0.42 TCGA-CG-5721-01 1 46206587 46206587 A - IPP Frame_Shift_Del p.L237* 0.19 TCGA-CG-5721-01 1 46496683 46496683 C T MAST2 Missense_Mutation p.R905W 0.20 deleterious_low_confidence(0) possibly_damaging(0.88) TCGA-CG-5721-01 1 47691500 47691500 C T TAL1 Missense_Mutation p.A21T 0.11 deleterious_low_confidence(0) benign(0.063) TCGA-CG-5721-01 1 4834505 4834505 G A AJAP1 Silent p.R394R 0.20 TCGA-CG-5721-01 1 49201945 49201945 T C BEND5 Silent p.P358P 0.11 TCGA-CG-5721-01 1 51767291 51767291 A G TTC39A Missense_Mutation p.S340P 0.15 deleterious(0) benign(0.158) TCGA-CG-5721-01 1 52252277 52252277 A G OSBPL9 Missense_Mutation p.Y673C 0.18 tolerated(0.15) possibly_damaging(0.886) TCGA-CG-5721-01 1 52961105 52961105 A G ZCCHC11 Silent p.P420P 0.22 TCGA-CG-5721-01 1 53513586 53513586 A G SCP2 Missense_Mutation p.T509A 0.12 tolerated(0.15) benign(0.297) TCGA-CG-5721-01 1 53554604 53554604 G A SLC1A7 Missense_Mutation p.A470V 0.27 tolerated(0.05) probably_damaging(0.957) TCGA-CG-5721-01 1 53675834 53675834 T C CPT2 Missense_Mutation p.L163P 0.19 deleterious(0.02) probably_damaging(0.997) TCGA-CG-5721-01 1 54370370 54370370 T C DIO1 Silent p.S123S 0.18 TCGA-CG-5721-01 1 54513096 54513096 C T TMEM59 Intron 0.15 TCGA-CG-5721-01 1 55065067 55065067 T C ACOT11 Missense_Mutation p.V288A 0.21 deleterious(0.01) probably_damaging(1) TCGA-CG-5721-01 1 55069590 55069590 C T ACOT11 Missense_Mutation p.P378S 0.13 deleterious(0.04) benign(0.208) TCGA-CG-5721-01 1 55175638 55175638 T C MROH7 Silent p.H1250H 0.18 TCGA-CG-5721-01 1 55624619 55624619 G A USP24 Nonsense_Mutation p.R387* 0.20 TCGA-CG-5721-01 1 57284984 57284984 T C C1orf168 5'UTR 0.18 TCGA-CG-5721-01 1 57415420 57415420 T G C8B Missense_Mutation p.Q224H 0.20 tolerated(0.16) possibly_damaging(0.789) TCGA-CG-5721-01 1 57425755 57425755 T C C8B Missense_Mutation p.I63V 0.20 tolerated(0.87) benign(0.018) TCGA-CG-5721-01 1 6196693 6196693 A - CHD5 Frame_Shift_Del p.F860Lfs*4 0.12 TCGA-CG-5721-01 1 6204099 6204099 G A CHD5 Missense_Mutation p.A640V 0.13 tolerated(0.31) benign(0.008) TCGA-CG-5721-01 1 6212526 6212526 G A CHD5 Silent p.A272A 0.23 TCGA-CG-5721-01 1 62676144 62676144 T C L1TD1 Silent p.H566H 0.10 TCGA-CG-5721-01 1 62970361 62970361 T C DOCK7 Missense_Mutation p.I1537M 0.16 deleterious(0.02) possibly_damaging(0.847) TCGA-CG-5721-01 1 6313900 6313900 C T GPR153 Missense_Mutation p.A222T 0.18 tolerated(0.07) benign(0.038) TCGA-CG-5721-01 1 6399491 6399491 A G ACOT7 Splice_Site p.X150_splice 0.16 TCGA-CG-5721-01 1 64644641 64644641 A G ROR1 3'UTR 0.42 TCGA-CG-5721-01 1 65147750 65147750 C T CACHD1 Missense_Mutation p.R1132C 0.22 deleterious(0.01) possibly_damaging(0.619) TCGA-CG-5721-01 1 65243402 65243402 A G RAVER2 Missense_Mutation p.Q138R 0.21 deleterious(0) probably_damaging(0.998) TCGA-CG-5721-01 1 65524156 65524156 A G MIR101-1 RNA 0.21 TCGA-CG-5721-01 1 65830470 65830470 T C DNAJC6 Splice_Site p.X115_splice 0.18 TCGA-CG-5721-01 1 66067119 66067119 A G LEPR Missense_Mutation p.N347D 0.04 deleterious(0.01) probably_damaging(0.996) TCGA-CG-5721-01 1 66098871 66098871 A G LEPR Intron 0.18 TCGA-CG-5721-01 1 66098926 66098926 T C LEPR Intron 0.25 TCGA-CG-5721-01 1 6631009 6631009 G A TAS1R1 Missense_Mutation p.A78T 0.27 deleterious(0.03) probably_damaging(0.996) TCGA-CG-5721-01 1 6636476 6636476 T - TAS1R1 Frame_Shift_Del p.L422Wfs*30 0.20 TCGA-CG-5721-01 1 6659354 6659354 G A KLHL21 Missense_Mutation p.R394C 0.20 tolerated(0.09) possibly_damaging(0.456) TCGA-CG-5721-01 1 6679933 6679933 A G PHF13 Missense_Mutation p.D71G 0.17 tolerated(0.1) benign(0.176) TCGA-CG-5721-01 1 67105497 67105497 A T SGIP1 Missense_Mutation p.E70V 0.20 deleterious(0) probably_damaging(0.977) TCGA-CG-5721-01 1 67185012 67185012 G A SGIP1 Missense_Mutation p.A556T 0.10 tolerated(0.3) benign(0.011) TCGA-CG-5721-01 1 67337080 67337080 A T WDR78 Missense_Mutation p.C305S 0.18 tolerated(0.12) benign(0.119) TCGA-CG-5721-01 1 68171216 68171216 T C GNG12 Missense_Mutation p.H46R 0.16 deleterious(0.03) benign(0.438) TCGA-CG-5721-01 1 68171242 68171242 C T GNG12 Silent p.A37A 0.23 TCGA-CG-5721-01 1 68564378 68564378 A T WLS Nonsense_Mutation p.Y523* 0.16 TCGA-CG-5721-01 1 68610324 68610324 A - WLS Frame_Shift_Del p.F428Lfs*16 0.12 TCGA-CG-5721-01 1 71530743 71530743 T C ZRANB2 3'UTR 0.15 TCGA-CG-5721-01 1 74957869 74957869 G A TNNI3K Missense_Mutation p.R858Q 0.19 tolerated_low_confidence(0.11) benign(0.016) TCGA-CG-5721-01 1 75072466 75072467 CT - C1orf173 Frame_Shift_Del p.E436Vfs*8 0.12 TCGA-CG-5721-01 1 75108709 75108709 A G C1orf173 Splice_Site p.X105_splice 0.21 TCGA-CG-5721-01 1 75188918 75188918 C T CRYZ Missense_Mutation p.V50M 0.16 tolerated(0.05) probably_damaging(0.916) TCGA-CG-5721-01 1 75606712 75606712 G A LHX8 Missense_Mutation p.V104I 0.18 tolerated(0.06) probably_damaging(0.998) TCGA-CG-5721-01 1 76256992 76256992 T C RABGGTB Silent p.S146S 0.14 TCGA-CG-5721-01 1 77620132 77620132 A G PIGK Splice_Site p.X329_splice 0.14 TCGA-CG-5721-01 1 77629529 77629529 A G PIGK Splice_Site p.X195_splice 0.16 TCGA-CG-5721-01 1 78326981 78326981 A G FAM73A Missense_Mutation p.T450A 0.17 deleterious(0.05) benign(0.151) TCGA-CG-5721-01 1 78329681 78329681 A G FAM73A Missense_Mutation p.N493D 0.20 deleterious(0) probably_damaging(0.984) TCGA-CG-5721-01 1 7890044 7890044 A G PER3 Missense_Mutation p.T1004A 0.10 tolerated_low_confidence(0.89) benign(0.418) TCGA-CG-5721-01 1 7998254 7998254 T - TNFRSF9 Frame_Shift_Del p.G116Vfs*33 0.27 TCGA-CG-5721-01 1 8073280 8073280 A G ERRFI1 Missense_Mutation p.V460A 0.20 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-CG-5721-01 1 8074243 8074243 A G ERRFI1 Missense_Mutation p.L139P 0.20 tolerated_low_confidence(0.28) benign(0.001) TCGA-CG-5721-01 1 8074255 8074255 T - ERRFI1 Frame_Shift_Del p.N135Tfs*40 0.22 TCGA-CG-5721-01 1 82372891 82372891 A T LPHN2 Missense_Mutation p.D88V 0.22 deleterious(0) possibly_damaging(0.895) TCGA-CG-5721-01 1 8397983 8397983 T C SLC45A1 Missense_Mutation p.Y569H 0.22 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 1 84610152 84610152 T C PRKACB Silent p.G36G 0.22 TCGA-CG-5721-01 1 85130189 85130189 T C SSX2IP Missense_Mutation p.N195S 0.14 tolerated(0.22) probably_damaging(0.994) TCGA-CG-5721-01 1 85424273 85424273 T C MCOLN2 Missense_Mutation p.Y117C 0.13 tolerated(0.07) benign(0.077) TCGA-CG-5721-01 1 85431242 85431242 A G MCOLN2 Missense_Mutation p.V76A 0.20 deleterious(0) possibly_damaging(0.849) TCGA-CG-5721-01 1 85598648 85598648 C G WDR63 Silent p.V881V 0.20 TCGA-CG-5721-01 1 86591117 86591117 A G COL24A1 Missense_Mutation p.V301A 0.18 tolerated(0.64) benign(0.003) TCGA-CG-5721-01 1 86591185 86591185 T C COL24A1 Silent p.V278V 0.14 TCGA-CG-5721-01 1 86921029 86921029 C T CLCA2 Missense_Mutation p.A884V 0.27 tolerated(0.6) benign(0.009) TCGA-CG-5721-01 1 89408756 89408756 C T CCBL2 Missense_Mutation p.V412I 0.22 tolerated(0.25) benign(0.067) TCGA-CG-5721-01 1 89479832 89479832 A G GBP3 Silent p.L187L 0.19 TCGA-CG-5721-01 1 89848299 89848299 T G GBP6 Missense_Mutation p.L410R 0.18 deleterious(0) probably_damaging(0.996) TCGA-CG-5721-01 1 90058418 90058418 A G LRRC8B Missense_Mutation p.H743R 0.20 tolerated(0.84) benign(0) TCGA-CG-5721-01 1 9005977 9005977 T C CA6 Missense_Mutation p.F11S 0.15 tolerated(0.07) possibly_damaging(0.502) TCGA-CG-5721-01 1 90493124 90493124 T C ZNF326 Missense_Mutation p.V538A 0.24 tolerated_low_confidence(0.5) unknown(0) TCGA-CG-5721-01 1 91405701 91405701 T C ZNF644 Missense_Mutation p.T404A 0.05 tolerated(0.63) benign(0.002) TCGA-CG-5721-01 1 91406703 91406703 T C ZNF644 Missense_Mutation p.N70D 0.18 tolerated(0.05) benign(0.003) TCGA-CG-5721-01 1 91977451 91977451 C T CDC7 Silent p.S181S 0.10 TCGA-CG-5721-01 1 91977476 91977476 A - CDC7 Frame_Shift_Del p.K191Sfs*5 0.17 TCGA-CG-5721-01 1 92728468 92728468 T C GLMN Silent p.L475L 0.23 TCGA-CG-5721-01 1 9305622 9305622 T C H6PD Splice_Site p.X209_splice 0.18 TCGA-CG-5721-01 1 93159366 93159366 T - EVI5 Frame_Shift_Del p.M408* 0.24 TCGA-CG-5721-01 1 93705385 93705385 A G CCDC18 Silent p.V1024V 0.16 TCGA-CG-5721-01 1 94018104 94018104 T - FNBP1L 3'UTR 0.35 TCGA-CG-5721-01 1 94544999 94544999 A G ABCA4 Missense_Mutation p.L373S 0.18 deleterious(0) probably_damaging(0.917) TCGA-CG-5721-01 1 94980753 94980753 C T ABCD3 Missense_Mutation p.H633Y 0.20 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 1 95709937 95709937 A G RWDD3 Missense_Mutation p.N86D 0.22 deleterious(0.01) benign(0.09) TCGA-CG-5721-01 1 9661349 9661349 A G TMEM201 Missense_Mutation p.T265A 0.29 tolerated(1) benign(0.001) TCGA-CG-5721-01 1 979559 979559 C T AGRN Silent p.R690R 0.12 TCGA-CG-5721-01 1 99772369 99772369 G A LPPR4 Missense_Mutation p.G699R 0.19 deleterious(0) possibly_damaging(0.587) TCGA-CG-5721-01 20 10624479 10624479 T C JAG1 Missense_Mutation p.N802S 0.21 deleterious(0) probably_damaging(0.995) TCGA-CG-5721-01 20 1161734 1161734 T C TMEM74B Missense_Mutation p.I177V 0.15 tolerated(0.94) possibly_damaging(0.69) TCGA-CG-5721-01 20 13714388 13714388 T - ESF1 Frame_Shift_Del p.R644Dfs*2 0.22 TCGA-CG-5721-01 20 13976388 13976388 A G MACROD2 5'UTR 0.13 TCGA-CG-5721-01 20 1424297 1424297 C T NSFL1C 3'UTR 0.28 TCGA-CG-5721-01 20 16348120 16348120 A - KIF16B Frame_Shift_Del p.Y1284Ifs*18 0.15 TCGA-CG-5721-01 20 16359926 16359926 G A KIF16B Silent p.R907R 0.18 TCGA-CG-5721-01 20 17943357 17943357 T C SNX5 Intron 0.24 TCGA-CG-5721-01 20 18167991 18167991 A G CSRP2BP Missense_Mutation p.Y746C 0.19 deleterious(0) probably_damaging(0.998) TCGA-CG-5721-01 20 18296188 18296188 T C ZNF133 Silent p.S230S 0.16 TCGA-CG-5721-01 20 18513351 18513351 T C SEC23B Missense_Mutation p.V426A 0.05 tolerated(0.69) benign(0.002) TCGA-CG-5721-01 20 18523751 18523751 T C SEC23B Missense_Mutation p.F534L 0.20 tolerated(0.21) benign(0.201) TCGA-CG-5721-01 20 1915403 1915403 A G SIRPA Intron 0.10 TCGA-CG-5721-01 20 20020405 20020405 G A CRNKL1 Missense_Mutation p.R626W 0.22 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 20 20144857 20144857 A G C20orf26 Missense_Mutation p.E397G 0.07 deleterious(0) probably_damaging(0.971) TCGA-CG-5721-01 20 20226821 20226821 A G C20orf26 Silent p.K707K 0.09 TCGA-CG-5721-01 20 20571891 20571891 C T RALGAPA2 Silent p.Q757Q 0.22 TCGA-CG-5721-01 20 20582381 20582381 C T RALGAPA2 Silent p.T716T 0.13 TCGA-CG-5721-01 20 21143065 21143065 T C RP4-777D9.2 Intron 0.19 TCGA-CG-5721-01 20 22563595 22563595 G A FOXA2 Silent p.G95G 0.55 TCGA-CG-5721-01 20 23334997 23334997 C T NXT1 Missense_Mutation p.R107W 0.19 deleterious(0.01) benign(0.071) TCGA-CG-5721-01 20 25003605 25003605 A G ACSS1 Missense_Mutation p.Y311H 0.27 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 20 25290206 25290206 C T ABHD12 Missense_Mutation p.G209S 0.14 deleterious(0) probably_damaging(0.977) TCGA-CG-5721-01 20 2593880 2593880 A G TMC2 Missense_Mutation p.Y595C 0.13 deleterious(0.01) benign(0.098) TCGA-CG-5721-01 20 2597830 2597830 G A TMC2 Missense_Mutation p.V685M 0.19 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 20 2816204 2816204 C - PCED1A Frame_Shift_Del p.C425Afs*11 0.36 TCGA-CG-5721-01 20 2841438 2841438 C T VPS16 Nonsense_Mutation p.R187* 0.19 TCGA-CG-5721-01 20 2845650 2845650 G A VPS16 Silent p.L651L 0.13 TCGA-CG-5721-01 20 2998463 2998463 A G PTPRA Silent p.G315G 0.13 TCGA-CG-5721-01 20 30671779 30671779 C T HCK Silent p.N205N 0.15 TCGA-CG-5721-01 20 30785129 30785129 A G PLAGL2 Missense_Mutation p.V206A 0.31 deleterious(0) possibly_damaging(0.9) TCGA-CG-5721-01 20 30789952 30789952 G - PLAGL2 Frame_Shift_Del p.W11Gfs*15 0.20 TCGA-CG-5721-01 20 30898349 30898349 G A KIF3B Missense_Mutation p.A257T 0.21 tolerated(0.09) probably_damaging(0.919) TCGA-CG-5721-01 20 31022395 31022395 C T ASXL1 Missense_Mutation p.A627V 0.42 deleterious(0.02) benign(0.369) TCGA-CG-5721-01 20 31024833 31024833 T - ASXL1 Frame_Shift_Del p.Y1441Mfs*9 0.19 TCGA-CG-5721-01 20 3127511 3127511 A G FASTKD5 Missense_Mutation p.S736P 0.15 tolerated(1) benign(0.007) TCGA-CG-5721-01 20 31372648 31372648 C T DNMT3B Missense_Mutation p.R97C 0.20 deleterious_low_confidence(0.02) possibly_damaging(0.459) TCGA-CG-5721-01 20 31577472 31577472 T C SUN5 Missense_Mutation p.I189M 0.23 tolerated(0.06) probably_damaging(0.999) TCGA-CG-5721-01 20 31672763 31672763 A G BPIFB4 Missense_Mutation p.Y248C 0.30 deleterious(0.02) possibly_damaging(0.796) TCGA-CG-5721-01 20 31890782 31890782 T - BPIFB1 Frame_Shift_Del p.F349Lfs*2 0.18 TCGA-CG-5721-01 20 31946924 31946924 G T CDK5RAP1 Silent p.T563T 0.19 TCGA-CG-5721-01 20 32005722 32005722 A G SNTA1 Silent p.Y168Y 0.19 TCGA-CG-5721-01 20 32026753 32026753 A - SNTA1 Frame_Shift_Del p.F130Lfs*9 0.27 TCGA-CG-5721-01 20 3233240 3233240 T C C20orf194 Missense_Mutation p.D1171G 0.16 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 20 32693304 32693306 CTT - EIF2S2 In_Frame_Del p.K21del 0.13 TCGA-CG-5721-01 20 33330967 33330967 T C NCOA6 Silent p.Q1031Q 0.18 TCGA-CG-5721-01 20 33338001 33338001 G - NCOA6 Frame_Shift_Del p.P666Rfs*12 0.23 TCGA-CG-5721-01 20 33872297 33872297 T C EIF6 Splice_Site 0.23 TCGA-CG-5721-01 20 33874637 33874637 G A FAM83C Missense_Mutation p.P649S 0.38 deleterious_low_confidence(0) possibly_damaging(0.874) TCGA-CG-5721-01 20 34145273 34145273 T C ERGIC3 Nonstop_Mutation p.*389Qext*? 0.17 TCGA-CG-5721-01 20 34526819 34526819 A G PHF20 Missense_Mutation p.Y834C 0.17 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 20 34618478 34618478 A G CNBD2 Missense_Mutation p.I543V 0.21 tolerated(0.41) benign(0.034) TCGA-CG-5721-01 20 34773147 34773147 T C EPB41L1 Silent p.G225G 0.29 TCGA-CG-5721-01 20 35060838 35060838 C T DLGAP4 Missense_Mutation p.R240C 0.19 deleterious(0) probably_damaging(0.931) TCGA-CG-5721-01 20 35125161 35125161 A G DLGAP4 Missense_Mutation p.T568A 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-CG-5721-01 20 35661170 35661170 A G RBL1 Silent p.G760G 0.20 TCGA-CG-5721-01 20 35882611 35882611 A G GHRH Splice_Site p.X103_splice 0.22 TCGA-CG-5721-01 20 36668870 36668870 T A RPRD1B Nonsense_Mutation p.L62* 0.21 TCGA-CG-5721-01 20 37357038 37357038 T G SLC32A1 Missense_Mutation p.L445R 0.16 deleterious(0) probably_damaging(0.981) TCGA-CG-5721-01 20 37531369 37531369 G A PPP1R16B Silent p.A210A 0.20 TCGA-CG-5721-01 20 39976200 39976200 T C LPIN3 Silent p.I67I 0.16 TCGA-CG-5721-01 20 39990405 39990405 T C EMILIN3 Missense_Mutation p.S602G 0.23 deleterious(0.02) possibly_damaging(0.449) TCGA-CG-5721-01 20 39992288 39992288 G - EMILIN3 Frame_Shift_Del p.S169Afs*45 0.21 TCGA-CG-5721-01 20 40044014 40044014 C T CHD6 Missense_Mutation p.A2251T 0.39 tolerated(0.14) benign(0.41) TCGA-CG-5721-01 20 40747089 40747089 T C PTPRT Missense_Mutation p.N979S 0.25 deleterious(0.04) possibly_damaging(0.834) TCGA-CG-5721-01 20 409723 409723 A G RBCK1 Silent p.P479P 0.09 TCGA-CG-5721-01 20 42169672 42169672 A G L3MBTL1 Silent p.G809G 0.19 TCGA-CG-5721-01 20 42203604 42203604 G T SGK2 Missense_Mutation p.W278L 0.08 deleterious(0.01) probably_damaging(0.937) TCGA-CG-5721-01 20 42315583 42315583 G A MYBL2 Missense_Mutation p.R124H 0.17 deleterious(0.01) probably_damaging(0.976) TCGA-CG-5721-01 20 42355289 42355289 G A GTSF1L Nonsense_Mutation p.R16* 0.14 TCGA-CG-5721-01 20 43109032 43109032 C T TTPAL Silent p.T131T 0.20 TCGA-CG-5721-01 20 43257798 43257798 G A ADA Silent p.I36I 0.25 TCGA-CG-5721-01 20 43837338 43837338 C T SEMG1 3'UTR 0.21 TCGA-CG-5721-01 20 44540158 44540158 G A PLTP 5'UTR 0.19 TCGA-CG-5721-01 20 44578447 44578447 C T ZNF335 Missense_Mutation p.D1221N 0.26 deleterious(0) probably_damaging(0.987) TCGA-CG-5721-01 20 44597057 44597057 C T ZNF335 Intron 0.19 TCGA-CG-5721-01 20 46295229 46295229 T C SULF2 Missense_Mutation p.Y527C 0.17 tolerated(0.06) possibly_damaging(0.838) TCGA-CG-5721-01 20 46311886 46311886 C T SULF2 Missense_Mutation p.E306K 0.25 deleterious(0) probably_damaging(0.988) TCGA-CG-5721-01 20 472935 472935 C T CSNK2A1 Missense_Mutation p.R195Q 0.14 deleterious(0) possibly_damaging(0.787) TCGA-CG-5721-01 20 47868143 47868143 T G ZNFX1 Missense_Mutation p.E1078A 0.31 deleterious(0) benign(0.059) TCGA-CG-5721-01 20 47887946 47887946 T C ZNFX1 Missense_Mutation p.T135A 0.16 tolerated(0.87) benign(0) TCGA-CG-5721-01 20 48256242 48256242 C T B4GALT5 Missense_Mutation p.G297D 0.18 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 20 4880213 4880213 G A SLC23A2 Missense_Mutation p.T157M 0.24 deleterious(0.04) possibly_damaging(0.613) TCGA-CG-5721-01 20 49184937 49184937 C T PTPN1 Silent p.C92C 0.15 TCGA-CG-5721-01 20 49196293 49196293 C - PTPN1 Frame_Shift_Del p.P308Hfs*27 0.23 TCGA-CG-5721-01 20 49247292 49247292 T C FAM65C Silent p.A31A 0.19 TCGA-CG-5721-01 20 49366647 49366647 A G PARD6B Silent p.R247R 0.20 TCGA-CG-5721-01 20 49509799 49509799 T C ADNP Missense_Mutation p.I484M 0.21 tolerated(0.38) probably_damaging(0.998) TCGA-CG-5721-01 20 49520468 49520468 T A ADNP Silent p.I22I 0.17 TCGA-CG-5721-01 20 49626525 49626525 G A KCNG1 Silent p.F117F 0.21 TCGA-CG-5721-01 20 50140511 50140511 T C NFATC2 Missense_Mutation p.D90G 0.24 deleterious(0.04) benign(0.147) TCGA-CG-5721-01 20 50400670 50400670 T C SALL4 3'UTR 0.23 TCGA-CG-5721-01 20 50705146 50705146 C T ZFP64 Missense_Mutation p.C141Y 0.16 deleterious(0.02) probably_damaging(0.936) TCGA-CG-5721-01 20 5096170 5096170 A G PCNA Missense_Mutation p.Y211H 0.13 deleterious(0) probably_damaging(0.99) TCGA-CG-5721-01 20 51870983 51870983 G T TSHZ2 Missense_Mutation p.R329L 0.21 tolerated(0.36) probably_damaging(0.998) TCGA-CG-5721-01 20 52192756 52192756 A C ZNF217 Silent p.P849P 0.17 TCGA-CG-5721-01 20 55213122 55213122 T C TFAP2C 3'UTR 0.24 TCGA-CG-5721-01 20 55758796 55758796 G A BMP7 Missense_Mutation p.R314W 0.20 deleterious(0) possibly_damaging(0.849) TCGA-CG-5721-01 20 55913380 55913380 T C SPO11 Missense_Mutation p.W265R 0.19 deleterious(0) possibly_damaging(0.86) TCGA-CG-5721-01 20 56227349 56227349 G - PMEPA1 Frame_Shift_Del p.S209Afs*61 0.31 TCGA-CG-5721-01 20 56934851 56934851 C G RAB22A 3'UTR 0.42 TCGA-CG-5721-01 20 57251459 57251459 G A STX16 3'UTR 0.32 TCGA-CG-5721-01 20 57485796 57485796 C A GNAS Missense_Mutation p.A1009D 0.18 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 20 57561870 57561870 G A NELFCD Missense_Mutation p.A98T 0.24 deleterious(0.01) probably_damaging(0.984) TCGA-CG-5721-01 20 57565009 57565009 A T NELFCD Missense_Mutation p.I270F 0.16 deleterious(0.04) possibly_damaging(0.522) TCGA-CG-5721-01 20 57568057 57568057 C G NELFCD Missense_Mutation p.P430A 0.27 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 20 57896191 57896192 - G EDN3 Frame_Shift_Ins p.R164Efs*3 0.24 TCGA-CG-5721-01 20 58330282 58330282 T C PHACTR3 Missense_Mutation p.V135A 0.23 tolerated(0.78) benign(0) TCGA-CG-5721-01 20 58467121 58467121 T - SYCP2 Frame_Shift_Del p.N763Mfs*12 0.19 TCGA-CG-5721-01 20 60509183 60509183 C T CDH4 Missense_Mutation p.R817C 0.22 deleterious(0) possibly_damaging(0.893) TCGA-CG-5721-01 20 6057833 6057833 C A FERMT1 Missense_Mutation p.G674V 0.14 deleterious(0) probably_damaging(0.979) TCGA-CG-5721-01 20 6057917 6057917 T C FERMT1 Missense_Mutation p.Y646C 0.20 deleterious(0) benign(0.013) TCGA-CG-5721-01 20 60714246 60714246 G A PSMA7 Missense_Mutation p.T119M 0.18 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 20 60885488 60885488 T C LAMA5 Silent p.G3529G 0.14 TCGA-CG-5721-01 20 60890201 60890201 T C LAMA5 Missense_Mutation p.T2644A 0.13 benign(0.04) TCGA-CG-5721-01 20 61341218 61341218 G A NTSR1 Missense_Mutation p.G220D 0.19 tolerated(0.43) benign(0.133) TCGA-CG-5721-01 20 61525226 61525226 C A DIDO1 Missense_Mutation p.G965C 0.29 probably_damaging(1) TCGA-CG-5721-01 20 61537062 61537062 G A DIDO1 Intron 0.19 TCGA-CG-5721-01 20 61939423 61939423 G - COL20A1 Frame_Shift_Del p.N255Tfs*8 0.33 TCGA-CG-5721-01 20 62163998 62163998 G T PTK6 Missense_Mutation p.A238D 0.18 deleterious(0) probably_damaging(0.986) TCGA-CG-5721-01 20 62200870 62200870 C T HELZ2 Missense_Mutation p.R240H 0.43 tolerated(0.21) benign(0.001) TCGA-CG-5721-01 20 62250679 62250679 G A GMEB2 Silent p.D24D 0.21 TCGA-CG-5721-01 20 62904640 62904640 T C PCMTD2 Missense_Mutation p.I258T 0.21 tolerated(0.41) benign(0.001) TCGA-CG-5721-01 20 6759620 6759620 G C BMP2 Missense_Mutation p.A359P 0.13 tolerated(0.11) probably_damaging(0.998) TCGA-CG-5721-01 20 7894828 7894828 T C HAO1 Silent p.K176K 0.25 TCGA-CG-5721-01 20 948715 948715 G A RSPO4 Missense_Mutation p.T49I 0.08 deleterious(0.03) possibly_damaging(0.682) TCGA-CG-5721-01 21 10916386 10916386 A G TPTE Silent p.I420I 0.08 TCGA-CG-5721-01 21 10971316 10971316 A C TPTE Missense_Mutation p.I14S 0.08 tolerated_low_confidence(0.2) benign(0.032) TCGA-CG-5721-01 21 15746385 15746385 A G HSPA13 Silent p.S323S 0.19 TCGA-CG-5721-01 21 17191087 17191087 T C USP25 Silent p.H334H 0.16 TCGA-CG-5721-01 21 19666595 19666595 G A TMPRSS15 Silent p.C826C 0.18 TCGA-CG-5721-01 21 27136558 27136558 A G GABPA Silent p.T280T 0.12 TCGA-CG-5721-01 21 27938613 27938613 A T CYYR1 Missense_Mutation p.Y50N 0.15 deleterious(0) probably_damaging(0.995) TCGA-CG-5721-01 21 28315800 28315800 T C ADAMTS5 Missense_Mutation p.D435G 0.18 tolerated(0.28) probably_damaging(0.912) TCGA-CG-5721-01 21 28338270 28338270 G A ADAMTS5 Silent p.D147D 0.33 TCGA-CG-5721-01 21 30248595 30248595 T - N6AMT1 3'UTR 0.18 TCGA-CG-5721-01 21 30380115 30380115 C T RWDD2B Missense_Mutation p.G231D 0.20 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 21 30380209 30380209 T C RWDD2B Missense_Mutation p.K200E 0.20 deleterious(0) probably_damaging(0.998) TCGA-CG-5721-01 21 30693734 30693734 T C BACH1 Missense_Mutation p.F45L 0.05 deleterious(0) benign(0.44) TCGA-CG-5721-01 21 30698571 30698571 A - BACH1 Frame_Shift_Del p.K144Nfs*22 0.16 TCGA-CG-5721-01 21 31654380 31654380 A G KRTAP24-1 3'UTR 0.24 TCGA-CG-5721-01 21 31654914 31654914 T A KRTAP24-1 Missense_Mutation p.S113C 0.17 deleterious(0.02) benign(0.269) TCGA-CG-5721-01 21 31769001 31769001 T C KRTAP13-1 3'UTR 0.18 TCGA-CG-5721-01 21 31812780 31812781 CT - KRTAP15-1 Frame_Shift_Del p.Y48Qfs*9 0.21 TCGA-CG-5721-01 21 32119274 32119274 A G KRTAP21-2 Missense_Mutation p.Y83H 0.15 deleterious_low_confidence(0) unknown(0) TCGA-CG-5721-01 21 33057462 33057462 G A SCAF4 Silent p.A796A 0.20 TCGA-CG-5721-01 21 33346910 33346910 A G HUNK Missense_Mutation p.T352A 0.22 tolerated(0.05) possibly_damaging(0.542) TCGA-CG-5721-01 21 33686877 33686877 A G MRAP 3'Flank 0.20 TCGA-CG-5721-01 21 33976433 33976433 A G AP000275.65 Splice_Site p.X178_splice 0.24 TCGA-CG-5721-01 21 34727754 34727754 A - IFNAR1 Frame_Shift_Del p.K526Nfs*36 0.28 TCGA-CG-5721-01 21 34876757 34876757 C T GART Missense_Mutation p.G935R 0.17 tolerated(0.06) probably_damaging(0.999) TCGA-CG-5721-01 21 34922190 34922190 C A SON Missense_Mutation p.S218Y 0.28 possibly_damaging(0.608) TCGA-CG-5721-01 21 34927628 34927628 T C SON Missense_Mutation p.S2031P 0.15 benign(0.184) TCGA-CG-5721-01 21 34931991 34931991 T C SON Silent p.D2189D 0.22 TCGA-CG-5721-01 21 35469761 35469761 T C SLC5A3 3'UTR 0.19 TCGA-CG-5721-01 21 35497669 35497669 C T MRPS6 Missense_Mutation p.T25M 0.16 deleterious(0.02) possibly_damaging(0.719) TCGA-CG-5721-01 21 37507591 37507591 T C CBR3 Missense_Mutation p.V34A 0.17 deleterious(0.03) probably_damaging(0.937) TCGA-CG-5721-01 21 37617727 37617728 - G DOPEY2 Frame_Shift_Ins p.R1153Qfs*38 0.12 TCGA-CG-5721-01 21 38538528 38538528 G A TTC3 Missense_Mutation p.V1338M 0.16 tolerated(0.3) benign(0.045) TCGA-CG-5721-01 21 38538886 38538886 A G TTC3 Missense_Mutation p.N1457S 0.13 tolerated(0.47) benign(0.001) TCGA-CG-5721-01 21 38597828 38597828 T C DSCR3 3'UTR 0.14 TCGA-CG-5721-01 21 38862610 38862610 G A DYRK1A Silent p.A266A 0.22 TCGA-CG-5721-01 21 39671215 39671215 C - KCNJ15 Frame_Shift_Del p.L13Wfs*2 0.19 TCGA-CG-5721-01 21 39671704 39671704 G A KCNJ15 Missense_Mutation p.R174Q 0.17 deleterious(0) probably_damaging(0.998) TCGA-CG-5721-01 21 40578152 40578152 T C BRWD1 Missense_Mutation p.K1416E 0.23 deleterious(0.01) benign(0.144) TCGA-CG-5721-01 21 41457677 41457677 A G DSCAM Silent p.S1328S 0.19 TCGA-CG-5721-01 21 42710359 42710359 C G FAM3B Missense_Mutation p.T73S 0.16 tolerated(0.92) benign(0.02) TCGA-CG-5721-01 21 42780121 42780121 A G MX2 Silent p.R703R 0.10 TCGA-CG-5721-01 21 43161503 43161503 T C RIPK4 Missense_Mutation p.Y617C 0.15 deleterious(0.01) probably_damaging(1) TCGA-CG-5721-01 21 43169342 43169342 G A RIPK4 Silent p.G215G 0.19 TCGA-CG-5721-01 21 43716527 43716527 A G ABCG1 3'UTR 0.17 TCGA-CG-5721-01 21 44270135 44270136 GA - WDR4 3'UTR 0.25 TCGA-CG-5721-01 21 44840207 44840207 G A SIK1 Silent p.S293S 0.24 TCGA-CG-5721-01 21 45050308 45050308 T C HSF2BP Missense_Mutation p.T157A 0.13 tolerated(0.89) benign(0.058) TCGA-CG-5721-01 21 45163690 45163690 T C PDXK Splice_Site p.X111_splice 0.17 TCGA-CG-5721-01 21 45509730 45509730 C T TRAPPC10 Missense_Mutation p.P929L 0.12 deleterious(0) probably_damaging(0.992) TCGA-CG-5721-01 21 45725738 45725738 C A PFKL Intron 0.14 TCGA-CG-5721-01 21 45941907 45941907 G A TSPEAR Silent p.G475G 0.22 TCGA-CG-5721-01 21 46208000 46208000 C T UBE2G2 Silent p.L18L 0.20 TCGA-CG-5721-01 21 46323290 46323290 G A ITGB2 Silent p.S163S 0.17 TCGA-CG-5721-01 21 46323305 46323305 G A ITGB2 Silent p.N158N 0.16 TCGA-CG-5721-01 21 46323369 46323369 T C ITGB2 Missense_Mutation p.Y137C 0.26 deleterious(0) probably_damaging(0.997) TCGA-CG-5721-01 21 47546134 47546134 A G COL6A2 Missense_Mutation p.E802G 0.22 tolerated(0.06) benign(0.089) TCGA-CG-5721-01 21 47676879 47676879 G A MCM3AP Silent p.A1252A 0.16 TCGA-CG-5721-01 21 47704983 47704983 A G MCM3AP Missense_Mutation p.L73S 0.17 tolerated(0.22) benign(0.006) TCGA-CG-5721-01 21 47786508 47786508 G T PCNT Missense_Mutation p.E873D 0.19 possibly_damaging(0.636) TCGA-CG-5721-01 21 47822252 47822252 A G PCNT Missense_Mutation p.D1657G 0.24 possibly_damaging(0.811) TCGA-CG-5721-01 21 48080764 48080764 T - PRMT2 Frame_Shift_Del p.S286Qfs*9 0.19 TCGA-CG-5721-01 21 9907292 9907292 A G TEKT4P2 RNA 0.19 TCGA-CG-5721-01 22 16279249 16279249 A G POTEH Missense_Mutation p.V325A 0.06 tolerated(0.12) probably_damaging(0.998) TCGA-CG-5721-01 22 16287498 16287498 T C POTEH Missense_Mutation p.T130A 0.23 deleterious_low_confidence(0.01) benign(0.196) TCGA-CG-5721-01 22 17590314 17590314 G A IL17RA Silent p.A735A 0.14 TCGA-CG-5721-01 22 17619200 17619200 T C CECR5 Missense_Mutation p.Y328C 0.14 deleterious(0.02) benign(0.304) TCGA-CG-5721-01 22 17670900 17670900 C T CECR1 Missense_Mutation p.A302T 0.23 tolerated(0.57) benign(0.008) TCGA-CG-5721-01 22 18018207 18018207 A G CECR2 Splice_Site p.X392_splice 0.05 TCGA-CG-5721-01 22 18070770 18070770 G A SLC25A18 Missense_Mutation p.A219T 0.28 tolerated(0.07) probably_damaging(0.932) TCGA-CG-5721-01 22 18613870 18613870 G A TUBA8 Silent p.S439S 0.18 TCGA-CG-5721-01 22 18644674 18644674 C A USP18 Silent p.A124A 0.09 TCGA-CG-5721-01 22 18898483 18898483 A G DGCR6 Missense_Mutation p.Q152R 0.28 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 22 19028790 19028790 C T DGCR2 Missense_Mutation p.G393S 0.22 tolerated(0.08) probably_damaging(0.977) TCGA-CG-5721-01 22 19470330 19470330 A G CDC45 Missense_Mutation p.N108D 0.24 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 22 19950294 19950294 A G COMT Missense_Mutation p.Y82C 0.19 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 22 20024561 20024561 G A TANGO2 Intron 0.16 TCGA-CG-5721-01 22 20127090 20127090 T C ZDHHC8 Missense_Mutation p.C106R 0.22 deleterious(0) probably_damaging(0.998) TCGA-CG-5721-01 22 20302122 20302122 C - DGCR6L 3'UTR 0.21 TCGA-CG-5721-01 22 20303653 20303653 G A DGCR6L Nonsense_Mutation p.R121* 0.29 TCGA-CG-5721-01 22 20760494 20760494 G A ZNF74 Missense_Mutation p.G391S 0.31 tolerated(0.63) benign(0.048) TCGA-CG-5721-01 22 20891434 20891434 A G MED15 Silent p.A33A 0.12 TCGA-CG-5721-01 22 20929471 20929471 C T MED15 Silent p.S408S 0.23 TCGA-CG-5721-01 22 21062346 21062346 T C PI4KA Missense_Mutation p.I2100V 0.19 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 22 21350351 21350351 G A LZTR1 Missense_Mutation p.M723I 0.23 tolerated(0.07) benign(0.026) TCGA-CG-5721-01 22 21799230 21799230 C T HIC2 Missense_Mutation p.R16C 0.09 tolerated_low_confidence(0.07) possibly_damaging(0.689) TCGA-CG-5721-01 22 21799327 21799327 T C HIC2 Missense_Mutation p.V48A 0.10 deleterious(0) benign(0.418) TCGA-CG-5721-01 22 21800502 21800502 A G HIC2 Missense_Mutation p.N440D 0.17 deleterious(0.01) possibly_damaging(0.636) TCGA-CG-5721-01 22 21841860 21841860 T C PI4KAP2 RNA 0.20 TCGA-CG-5721-01 22 21947247 21947247 T C UBE2L3 Splice_Site p.X99_splice 0.17 TCGA-CG-5721-01 22 21989105 21989105 C T CCDC116 Silent p.G251G 0.21 TCGA-CG-5721-01 22 22661562 22661562 T C BMS1P20 RNA 0.15 TCGA-CG-5721-01 22 22707660 22707660 T C IGLV5-48 Missense_Mutation p.V83A 0.30 deleterious(0.02) possibly_damaging(0.632) TCGA-CG-5721-01 22 23223513 23223513 G A IGLV3-1 Missense_Mutation p.G95R 0.19 tolerated(0.19) benign(0.109) TCGA-CG-5721-01 22 23438406 23438406 T C GNAZ Missense_Mutation p.I175T 0.12 deleterious(0) possibly_damaging(0.507) TCGA-CG-5721-01 22 23603710 23603710 G A BCR Missense_Mutation p.D579N 0.19 deleterious(0) probably_damaging(0.948) TCGA-CG-5721-01 22 24227111 24227111 T A SLC2A11 3'UTR 0.23 TCGA-CG-5721-01 22 24439497 24439497 C A CABIN1 Silent p.P159P 0.19 TCGA-CG-5721-01 22 24583571 24583571 T C SUSD2 Missense_Mutation p.Y642H 0.20 deleterious(0.01) probably_damaging(0.996) TCGA-CG-5721-01 22 25243746 25243746 G A SGSM1 Silent p.E95E 0.28 TCGA-CG-5721-01 22 26688424 26688424 A G SEZ6L Silent p.S49S 0.26 TCGA-CG-5721-01 22 26830248 26830248 A G ASPHD2 Missense_Mutation p.T223A 0.19 tolerated(0.29) benign(0.339) TCGA-CG-5721-01 22 26886097 26886097 A G SRRD Missense_Mutation p.N233D 0.19 deleterious(0) probably_damaging(0.998) TCGA-CG-5721-01 22 26899657 26899657 A G TFIP11 Missense_Mutation p.V208A 0.14 tolerated(0.4) benign(0.002) TCGA-CG-5721-01 22 26936888 26936888 A G TPST2 Missense_Mutation p.Y237H 0.15 tolerated(0.32) benign(0.056) TCGA-CG-5721-01 22 27024321 27024321 G A CRYBA4 Missense_Mutation p.D124N 0.24 deleterious(0.02) probably_damaging(0.998) TCGA-CG-5721-01 22 29444383 29444383 C T ZNRF3 Missense_Mutation p.R307W 0.21 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 22 29533411 29533411 C T KREMEN1 Missense_Mutation p.T238M 0.24 tolerated(0.07) possibly_damaging(0.888) TCGA-CG-5721-01 22 29696151 29696151 G T EWSR1 Nonstop_Mutation p.*662Yext*16 0.07 TCGA-CG-5721-01 22 29708221 29708221 G A GAS2L1 3'Flank 0.24 TCGA-CG-5721-01 22 29754783 29754783 C T AP1B1 Missense_Mutation p.A153T 0.19 deleterious(0) benign(0.315) TCGA-CG-5721-01 22 29837596 29837596 G A RFPL1 Missense_Mutation p.V147I 0.21 tolerated(0.11) possibly_damaging(0.612) TCGA-CG-5721-01 22 30064373 30064373 G T NF2 Missense_Mutation p.A313S 0.16 deleterious(0.05) benign(0.045) TCGA-CG-5721-01 22 31322775 31322776 CT - MORC2 3'UTR 0.18 TCGA-CG-5721-01 22 31536087 31536087 G A PLA2G3 Missense_Mutation p.A85V 0.27 tolerated(0.11) benign(0.035) TCGA-CG-5721-01 22 31669457 31669457 G A LIMK2 Silent p.T505T 0.25 TCGA-CG-5721-01 22 32010791 32010791 G C SFI1 Missense_Mutation p.A1005P 0.25 deleterious(0.05) possibly_damaging(0.636) TCGA-CG-5721-01 22 32229940 32229940 A G DEPDC5 Missense_Mutation p.D715G 0.21 tolerated(0.57) benign(0.012) TCGA-CG-5721-01 22 32293527 32293527 G - DEPDC5 Frame_Shift_Del p.P1414Lfs*151 0.15 TCGA-CG-5721-01 22 32586769 32586769 T C RFPL2 Missense_Mutation p.E376G 0.19 deleterious(0.04) benign(0.382) TCGA-CG-5721-01 22 32644771 32644771 T C SLC5A4 Missense_Mutation p.I111V 0.17 tolerated(1) benign(0.002) TCGA-CG-5721-01 22 32650198 32650198 C T SLC5A4 Silent p.A46A 0.20 TCGA-CG-5721-01 22 32794005 32794006 - T RTCB Frame_Shift_Ins p.M246Nfs*6 0.19 TCGA-CG-5721-01 22 33255366 33255366 C T TIMP3 3'UTR 0.22 TCGA-CG-5721-01 22 35661177 35661177 G T HMGXB4 Missense_Mutation p.G266C 0.17 deleterious_low_confidence(0.03) benign(0.417) TCGA-CG-5721-01 22 36661621 36661621 A G APOL1 Missense_Mutation p.S263G 0.18 tolerated(0.57) benign(0.002) TCGA-CG-5721-01 22 36960849 36960849 T C CACNG2 Missense_Mutation p.Y174C 0.21 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 22 37171821 37171821 T C IFT27 5'UTR 0.21 TCGA-CG-5721-01 22 37457578 37457578 G T KCTD17 Splice_Site p.X245_splice 0.38 TCGA-CG-5721-01 22 37637690 37637690 C T RAC2 Missense_Mutation p.G15D 0.17 deleterious_low_confidence(0) probably_damaging(1) TCGA-CG-5721-01 22 37769104 37769104 G - ELFN2 3'UTR 0.28 TCGA-CG-5721-01 22 38151115 38151115 A T TRIOBP Missense_Mutation p.E1832V 0.19 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 22 38694806 38694806 C A CSNK1E Missense_Mutation p.W290C 0.20 deleterious_low_confidence(0) possibly_damaging(0.548) TCGA-CG-5721-01 22 38694907 38694907 A G CSNK1E Missense_Mutation p.S257P 0.19 deleterious_low_confidence(0) benign(0.303) TCGA-CG-5721-01 22 38823509 38823509 C T KCNJ4 Missense_Mutation p.R210H 0.11 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 22 38884247 38884247 T C DDX17 Intron 0.22 TCGA-CG-5721-01 22 38897252 38897252 C T DDX17 Silent p.P107P 0.20 TCGA-CG-5721-01 22 38962699 38962699 T C DMC1 Missense_Mutation p.T47A 0.18 deleterious(0) benign(0.341) TCGA-CG-5721-01 22 39421596 39421596 T C APOBEC3D Silent p.N175N 0.20 TCGA-CG-5721-01 22 39884031 39884031 G A MGAT3 Missense_Mutation p.E227K 0.18 deleterious(0) probably_damaging(0.992) TCGA-CG-5721-01 22 39925608 39925608 G C RPS19BP1 Silent p.G100G 0.24 TCGA-CG-5721-01 22 40043875 40043875 G A CACNA1I Missense_Mutation p.R504Q 0.17 tolerated(0.17) unknown(0) TCGA-CG-5721-01 22 40064365 40064365 T C CACNA1I Silent p.D1391D 0.15 TCGA-CG-5721-01 22 40754911 40754911 A G ADSL Missense_Mutation p.I176V 0.16 tolerated(0.13) benign(0.028) TCGA-CG-5721-01 22 40805867 40805867 C T SGSM3 3'UTR 0.36 TCGA-CG-5721-01 22 40814987 40814987 C T MKL1 Silent p.T485T 0.19 TCGA-CG-5721-01 22 41573174 41573174 A G EP300 Missense_Mutation p.H1820R 0.18 possibly_damaging(0.888) TCGA-CG-5721-01 22 41574435 41574435 A G EP300 Silent p.G2240G 0.22 TCGA-CG-5721-01 22 41625571 41625571 G A L3MBTL2 Missense_Mutation p.R639Q 0.27 tolerated(0.12) benign(0.013) TCGA-CG-5721-01 22 41832509 41832509 C T TOB2 Missense_Mutation p.G281S 0.17 tolerated(0.8) benign(0.001) TCGA-CG-5721-01 22 41919849 41919849 G - ACO2 Frame_Shift_Del p.E464Rfs*51 0.26 TCGA-CG-5721-01 22 41974807 41974807 T C PMM1 Intron 0.22 TCGA-CG-5721-01 22 42016765 42016765 T C DESI1 Missense_Mutation p.I27V 0.14 tolerated(0.61) benign(0) TCGA-CG-5721-01 22 42262964 42262964 G A SREBF2 Missense_Mutation p.S73N 0.20 tolerated(0.43) benign(0) TCGA-CG-5721-01 22 42564716 42564716 G - TCF20 Frame_Shift_Del p.L1943Cfs*118 0.31 TCGA-CG-5721-01 22 43036028 43036028 T A ATP5L2 Missense_Mutation p.T85S 0.19 deleterious(0.01) benign(0.077) TCGA-CG-5721-01 22 43218294 43218294 A G ARFGAP3 Missense_Mutation p.V265A 0.15 tolerated(0.95) benign(0.001) TCGA-CG-5721-01 22 43529260 43529260 A G MCAT Missense_Mutation p.V321A 0.19 deleterious(0.01) probably_damaging(0.96) TCGA-CG-5721-01 22 43604189 43604189 A C SCUBE1 Missense_Mutation p.Y875D 0.15 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 22 44112809 44112809 T C EFCAB6 Silent p.E267E 0.12 TCGA-CG-5721-01 22 44258197 44258197 G A SULT4A1 Silent p.F22F 0.15 TCGA-CG-5721-01 22 44342336 44342336 G A PNPLA3 3'UTR 0.28 TCGA-CG-5721-01 22 44585064 44585064 C T PARVG Silent p.L106L 0.19 TCGA-CG-5721-01 22 44592258 44592258 A G PARVG Missense_Mutation p.D225G 0.20 tolerated(0.72) benign(0.004) TCGA-CG-5721-01 22 44681392 44681392 A G KIAA1644 Missense_Mutation p.L172P 0.15 tolerated_low_confidence(0.2) benign(0.431) TCGA-CG-5721-01 22 44893287 44893289 CTT - LDOC1L In_Frame_Del p.K50del 0.39 TCGA-CG-5721-01 22 45279040 45279040 G A PHF21B Silent p.L508L 0.19 TCGA-CG-5721-01 22 45719147 45719147 C A FAM118A Missense_Mutation p.P47T 0.14 deleterious(0.02) possibly_damaging(0.451) TCGA-CG-5721-01 22 45719217 45719217 A G FAM118A Missense_Mutation p.H70R 0.14 tolerated(0.07) possibly_damaging(0.783) TCGA-CG-5721-01 22 45958979 45958979 T C FBLN1 Intron 0.17 TCGA-CG-5721-01 22 46318891 46318891 G A WNT7B Missense_Mutation p.P299S 0.07 tolerated(0.69) benign(0.014) TCGA-CG-5721-01 22 46614282 46614282 C T PPARA Silent p.V164V 0.23 TCGA-CG-5721-01 22 46655729 46655729 A G PKDREJ Missense_Mutation p.I1164T 0.24 tolerated(0.08) benign(0.1) TCGA-CG-5721-01 22 46930187 46930187 C T CELSR1 Missense_Mutation p.V961M 0.23 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 22 47068811 47068811 T A GRAMD4 Missense_Mutation p.Y386N 0.12 deleterious(0) possibly_damaging(0.71) TCGA-CG-5721-01 22 50197911 50197911 C T BRD1 Missense_Mutation p.G489R 0.21 deleterious(0) probably_damaging(0.966) TCGA-CG-5721-01 22 50297546 50297546 G - ALG12 Frame_Shift_Del p.F470Sfs*63 0.25 TCGA-CG-5721-01 22 50635925 50635925 C - TRABD Frame_Shift_Del p.V195Sfs*46 0.23 TCGA-CG-5721-01 22 50664613 50664613 A G TUBGCP6 Silent p.L567L 0.22 TCGA-CG-5721-01 22 50716676 50716676 T - PLXNB2 Frame_Shift_Del p.N1586Tfs*23 0.16 TCGA-CG-5721-01 22 50728169 50728169 G A PLXNB2 Missense_Mutation p.A282V 0.18 deleterious(0.04) benign(0.151) TCGA-CG-5721-01 22 50897733 50897733 C T SBF1 Silent p.S1259S 0.13 TCGA-CG-5721-01 22 50898519 50898519 A G SBF1 Missense_Mutation p.M1118T 0.18 deleterious(0.02) benign(0.102) TCGA-CG-5721-01 22 50900413 50900413 G T SBF1 Silent p.T844T 0.09 TCGA-CG-5721-01 22 50906258 50906258 T C SBF1 Missense_Mutation p.Y79C 0.14 deleterious(0) probably_damaging(0.983) TCGA-CG-5721-01 22 50928213 50928213 G A MIOX Silent p.P262P 0.25 TCGA-CG-5721-01 22 50987826 50987826 G A KLHDC7B Missense_Mutation p.G411S 0.21 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 22 51018465 51018465 T C CHKB Missense_Mutation p.T289A 0.15 deleterious(0.03) benign(0.121) TCGA-CG-5721-01 22 51040316 51040316 G A MAPK8IP2 Missense_Mutation p.C55Y 0.19 tolerated(0.84) probably_damaging(0.996) TCGA-CG-5721-01 22 51177745 51177745 C T ACR Missense_Mutation p.R42C 0.18 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 2 100175428 100175428 T C AFF3 Missense_Mutation p.Y1090C 0.35 deleterious(0) probably_damaging(0.987) TCGA-CG-5721-01 2 102314966 102314966 T C MAP4K4 Missense_Mutation p.V30A 0.20 deleterious_low_confidence(0.02) unknown(0) TCGA-CG-5721-01 2 10269216 10269216 A G RRM2 Missense_Mutation p.T378A 0.20 tolerated_low_confidence(0.3) benign(0.001) TCGA-CG-5721-01 2 103119969 103119969 C T SLC9A4 Silent p.V261V 0.21 TCGA-CG-5721-01 2 103121775 103121775 A G SLC9A4 Missense_Mutation p.Y348C 0.21 tolerated(0.28) probably_damaging(0.995) TCGA-CG-5721-01 2 105716347 105716347 A G MRPS9 3'UTR 0.31 TCGA-CG-5721-01 2 107423021 107423021 T C ST6GAL2 3'UTR 0.15 TCGA-CG-5721-01 2 10822127 10822127 A G NOL10 Missense_Mutation p.S61P 0.12 deleterious(0) probably_damaging(0.996) TCGA-CG-5721-01 2 108455368 108455368 T C RGPD4 Missense_Mutation p.V118A 0.15 tolerated(0.05) possibly_damaging(0.539) TCGA-CG-5721-01 2 108488518 108488518 A G RGPD4 Missense_Mutation p.N1353S 0.19 deleterious(0.01) probably_damaging(0.997) TCGA-CG-5721-01 2 108998284 108998284 G A SULT1C4 Missense_Mutation p.R79Q 0.15 tolerated(0.07) possibly_damaging(0.564) TCGA-CG-5721-01 2 109102288 109102288 A G GCC2 Missense_Mutation p.E1239G 0.20 deleterious(0) probably_damaging(0.994) TCGA-CG-5721-01 2 109490018 109490018 T C CCDC138 Missense_Mutation p.I602T 0.23 deleterious(0) benign(0.005) TCGA-CG-5721-01 2 110259166 110259166 G A SH3RF3 Missense_Mutation p.R856H 0.21 deleterious(0.05) benign(0.26) TCGA-CG-5721-01 2 11053142 11053142 T C KCNF1 Missense_Mutation p.V197A 0.17 tolerated(0.08) benign(0.174) TCGA-CG-5721-01 2 112760715 112760717 TGT - MERTK In_Frame_Del p.V581del 0.22 TCGA-CG-5721-01 2 112817574 112817574 T A TMEM87B Missense_Mutation p.F62L 0.18 tolerated(0.27) benign(0.01) TCGA-CG-5721-01 2 112824632 112824632 T C TMEM87B Silent p.F146F 0.19 TCGA-CG-5721-01 2 113060881 113060881 A - ZC3H6 Frame_Shift_Del p.R99Efs*23 0.15 TCGA-CG-5721-01 2 113080227 113080227 T C ZC3H6 Missense_Mutation p.V363A 0.24 deleterious(0) probably_damaging(0.99) TCGA-CG-5721-01 2 11312126 11312126 A G PQLC3 Missense_Mutation p.T144A 0.22 tolerated(1) benign(0) TCGA-CG-5721-01 2 113304624 113304624 G A POLR1B Silent p.E71E 0.18 TCGA-CG-5721-01 2 113417111 113417111 G A SLC20A1 Missense_Mutation p.R460Q 0.21 deleterious(0.01) probably_damaging(0.995) TCGA-CG-5721-01 2 113504147 113504147 T C CKAP2L Silent p.V536V 0.19 TCGA-CG-5721-01 2 113509871 113509871 C T CKAP2L Silent p.L525L 0.15 TCGA-CG-5721-01 2 114398540 114398540 A G RABL2A Missense_Mutation p.R123G 0.21 tolerated(0.14) probably_damaging(0.91) TCGA-CG-5721-01 2 118586976 118586976 A G DDX18 Missense_Mutation p.N602D 0.14 tolerated(0.15) benign(0.008) TCGA-CG-5721-01 2 118701647 118701647 G A CCDC93 Missense_Mutation p.R456W 0.22 deleterious(0) benign(0.339) TCGA-CG-5721-01 2 120438936 120438936 C T TMEM177 Silent p.H169H 0.23 TCGA-CG-5721-01 2 121746705 121746705 C T GLI2 Missense_Mutation p.A1072V 0.31 deleterious(0.02) benign(0.278) TCGA-CG-5721-01 2 122038815 122038815 T C TFCP2L1 Missense_Mutation p.E32G 0.23 deleterious(0) probably_damaging(0.996) TCGA-CG-5721-01 2 122485562 122485562 C A NIFK Intron 0.30 TCGA-CG-5721-01 2 122493259 122493259 T G NIFK Missense_Mutation p.E58A 0.14 deleterious(0) probably_damaging(0.982) TCGA-CG-5721-01 2 122494368 122494368 A G NIFK Missense_Mutation p.V20A 0.12 tolerated(1) benign(0) TCGA-CG-5721-01 2 125504828 125504828 G T CNTNAP5 Missense_Mutation p.W699C 0.17 deleterious(0.01) benign(0.078) TCGA-CG-5721-01 2 1271265 1271265 C T SNTG2 Silent p.N402N 0.20 TCGA-CG-5721-01 2 128389955 128389955 G A MYO7B Missense_Mutation p.R1769H 0.30 tolerated(0.19) probably_damaging(1) TCGA-CG-5721-01 2 128525807 128525807 G A WDR33 Missense_Mutation p.R112W 0.24 deleterious(0) unknown(0) TCGA-CG-5721-01 2 128934410 128934410 C A UGGT1 Missense_Mutation p.P1188T 0.14 tolerated(0.28) benign(0.009) TCGA-CG-5721-01 2 131520855 131520855 A G AMER3 Missense_Mutation p.S404G 0.23 tolerated(0.06) benign(0.392) TCGA-CG-5721-01 2 131521980 131521980 A G AMER3 Missense_Mutation p.T779A 0.25 tolerated(0.21) benign(0.001) TCGA-CG-5721-01 2 132257787 132257787 C T AC093838.4 RNA 0.13 TCGA-CG-5721-01 2 132257818 132257818 C T AC093838.4 RNA 0.14 TCGA-CG-5721-01 2 135185960 135185960 T A MGAT5 Missense_Mutation p.F607I 0.18 deleterious(0.03) benign(0.125) TCGA-CG-5721-01 2 135848570 135848570 T C RAB3GAP1 Silent p.G51G 0.16 TCGA-CG-5721-01 2 135988440 135988440 T - ZRANB3 Frame_Shift_Del p.R533Dfs*3 0.17 TCGA-CG-5721-01 2 136548301 136548301 C T LCT Silent p.Q1754Q 0.23 TCGA-CG-5721-01 2 136872772 136872772 G A CXCR4 Silent p.V246V 0.19 TCGA-CG-5721-01 2 138169187 138169187 A G THSD7B Missense_Mutation p.R902G 0.20 deleterious(0) benign(0.291) TCGA-CG-5721-01 2 139326772 139326772 A - SPOPL 3'UTR 0.16 TCGA-CG-5721-01 2 141232837 141232837 C A LRP1B Missense_Mutation p.Q3165H 0.22 benign(0.216) TCGA-CG-5721-01 2 141243084 141243084 T C LRP1B Missense_Mutation p.N3085D 0.25 possibly_damaging(0.621) TCGA-CG-5721-01 2 143718259 143718259 G A KYNU Missense_Mutation p.V217M 0.21 deleterious(0.02) benign(0.268) TCGA-CG-5721-01 2 144525621 144525621 T C ARHGAP15 Silent p.P436P 0.16 TCGA-CG-5721-01 2 148693233 148693233 T C ORC4 Missense_Mutation p.K386R 0.21 tolerated(0.58) benign(0.007) TCGA-CG-5721-01 2 148733504 148733504 A G ORC4 Silent p.S8S 0.14 TCGA-CG-5721-01 2 149247708 149247708 A G MBD5 Missense_Mutation p.K1270E 0.18 deleterious_low_confidence(0.03) unknown(0) TCGA-CG-5721-01 2 152107765 152107765 T - RBM43 Frame_Shift_Del p.K243Nfs*5 0.20 TCGA-CG-5721-01 2 152139394 152139394 A G NMI Silent p.D23D 0.20 TCGA-CG-5721-01 2 152321218 152321218 A T RIF1 Missense_Mutation p.R1728S 0.18 deleterious(0) possibly_damaging(0.703) TCGA-CG-5721-01 2 152476094 152476094 G A NEB Silent p.I3581I 0.18 TCGA-CG-5721-01 2 152584353 152584353 T C NEB Missense_Mutation p.K49R 0.18 benign(0.005) TCGA-CG-5721-01 2 153192179 153192179 T C FMNL2 Missense_Mutation p.L21S 0.22 benign(0.113) TCGA-CG-5721-01 2 153514439 153514439 T C PRPF40A Silent p.K888K 0.20 TCGA-CG-5721-01 2 15358989 15358989 C T NBAS Missense_Mutation p.G2114R 0.08 deleterious(0.03) benign(0.221) TCGA-CG-5721-01 2 157185874 157185874 G A NR4A2 Silent p.Y275Y 0.25 TCGA-CG-5721-01 2 158152254 158152254 A G GALNT5 Silent p.L607L 0.21 TCGA-CG-5721-01 2 158182017 158182017 T C ERMN Silent p.E59E 0.18 TCGA-CG-5721-01 2 158287107 158287107 A C CYTIP Missense_Mutation p.V147G 0.18 deleterious(0) probably_damaging(0.933) TCGA-CG-5721-01 2 158412846 158412846 T C ACVR1C Splice_Site p.X102_splice 0.24 TCGA-CG-5721-01 2 158594106 158594106 C A ACVR1 Silent p.L489L 0.20 TCGA-CG-5721-01 2 158971625 158971625 G A UPP2 Missense_Mutation p.G122S 0.28 deleterious(0.03) probably_damaging(0.986) TCGA-CG-5721-01 2 159517885 159517885 C T PKP4 Missense_Mutation p.R712W 0.46 deleterious(0) probably_damaging(0.991) TCGA-CG-5721-01 2 160738648 160738648 T C LY75-CD302 Silent p.K411K 0.19 TCGA-CG-5721-01 2 161133827 161133827 G A RBMS1 Missense_Mutation p.A377V 0.22 deleterious(0.02) benign(0.155) TCGA-CG-5721-01 2 161135111 161135111 A G RBMS1 Missense_Mutation p.I337T 0.28 deleterious(0) benign(0.039) TCGA-CG-5721-01 2 161141508 161141508 G A RBMS1 Silent p.N268N 0.21 TCGA-CG-5721-01 2 162273269 162273269 G A TBR1 Silent p.A116A 0.24 TCGA-CG-5721-01 2 162275431 162275431 A G TBR1 Missense_Mutation p.Y333C 0.14 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 2 163002048 163002048 A G GCG Splice_Site p.X131_splice 0.20 TCGA-CG-5721-01 2 163027424 163027424 C A FAP 3'UTR 0.28 TCGA-CG-5721-01 2 163228312 163228312 G A KCNH7 3'UTR 0.19 TCGA-CG-5721-01 2 163230092 163230092 T C KCNH7 Missense_Mutation p.Y1071C 0.16 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 2 163393494 163393494 T C KCNH7 Missense_Mutation p.N135S 0.19 tolerated(0.41) benign(0.001) TCGA-CG-5721-01 2 164467285 164467285 C T FIGN Missense_Mutation p.D353N 0.19 deleterious(0.01) possibly_damaging(0.548) TCGA-CG-5721-01 2 1652950 1652950 G A PXDN Missense_Mutation p.R868W 0.30 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 2 166152280 166152280 T C SCN2A Intron 0.20 TCGA-CG-5721-01 2 166613688 166613688 T - GALNT3 Frame_Shift_Del p.S421Afs*11 0.13 TCGA-CG-5721-01 2 167144964 167144965 - T SCN9A Frame_Shift_Ins p.E433Rfs*6 0.12 TCGA-CG-5721-01 2 168105878 168105878 T C XIRP2 Missense_Mutation p.V2659A 0.28 benign(0.019) TCGA-CG-5721-01 2 168931518 168931518 G A STK39 Nonsense_Mutation p.R406* 0.19 TCGA-CG-5721-01 2 170044660 170044660 C T LRP2 Missense_Mutation p.V3050I 0.21 benign(0.021) TCGA-CG-5721-01 2 170097525 170097525 T C LRP2 Missense_Mutation p.N1340D 0.16 benign(0.071) TCGA-CG-5721-01 2 170413695 170413695 A G FASTKD1 Splice_Site p.X361_splice 0.27 TCGA-CG-5721-01 2 170865361 170865361 A - UBR3 Frame_Shift_Del p.N1428Ifs*32 0.12 TCGA-CG-5721-01 2 171572883 171572883 C T SP5 Nonsense_Mutation p.Q56* 0.29 TCGA-CG-5721-01 2 172823402 172823402 A G HAT1 Missense_Mutation p.H252R 0.12 deleterious(0.02) probably_damaging(0.995) TCGA-CG-5721-01 2 172965310 172965310 G A DLX2 Silent p.G316G 0.31 TCGA-CG-5721-01 2 174131421 174131421 C T MLTK Silent p.P782P 0.19 TCGA-CG-5721-01 2 174819995 174819995 A G SP3 Silent p.G415G 0.21 TCGA-CG-5721-01 2 176857025 176857025 C T KIAA1715 Nonsense_Mutation p.W64* 0.15 TCGA-CG-5721-01 2 176948405 176948405 T C EVX2 Missense_Mutation p.N34D 0.20 deleterious(0.01) possibly_damaging(0.449) TCGA-CG-5721-01 2 17698737 17698737 T - RAD51AP2 Frame_Shift_Del p.T316Lfs*2 0.17 TCGA-CG-5721-01 2 176995423 176995458 CTCCTCCTCCGCATCCTCCGCCTCCGCCGCCACCTC TCCTCCTCCGCATCATCCGCCTCCGCCGCCACCT HOXD8 Frame_Shift_Del p.P110Lfs*31 0.35 TCGA-CG-5721-01 2 176995458 176995458 C - HOXD8 Frame_Shift_Del p.C124Afs*53 0.35 TCGA-CG-5721-01 2 177016792 177016792 C T HOXD4 Missense_Mutation p.S144L 0.21 deleterious(0.01) benign(0.074) TCGA-CG-5721-01 2 177193105 177193105 A G MTX2 Missense_Mutation p.T124A 0.18 tolerated(0.15) benign(0.186) TCGA-CG-5721-01 2 178098751 178098751 T G NFE2L2 Silent p.G98G 0.12 TCGA-CG-5721-01 2 178386079 178386079 G A AGPS Missense_Mutation p.V594I 0.16 tolerated(0.12) benign(0.064) TCGA-CG-5721-01 2 17896257 17896257 T C SMC6 Missense_Mutation p.Y534C 0.14 deleterious(0) possibly_damaging(0.838) TCGA-CG-5721-01 2 179395406 179395406 T C TTN Silent p.L35312L 0.15 TCGA-CG-5721-01 2 179410270 179410270 C T TTN Missense_Mutation p.R31856H 0.19 TCGA-CG-5721-01 2 179425761 179425761 A G TTN Silent p.V28366V 0.21 TCGA-CG-5721-01 2 179426570 179426570 T C TTN Missense_Mutation p.T28097A 0.14 TCGA-CG-5721-01 2 179436182 179436182 T C TTN Missense_Mutation p.T24893A 0.20 TCGA-CG-5721-01 2 179437938 179437938 T C TTN Silent p.A24307A 0.19 TCGA-CG-5721-01 2 179440977 179440977 G A TTN Silent p.T23294T 0.20 TCGA-CG-5721-01 2 179446390 179446390 T C TTN Missense_Mutation p.N22202S 0.17 TCGA-CG-5721-01 2 179479128 179479128 T - TTN Intron 0.13 TCGA-CG-5721-01 2 179483496 179483496 T C TTN Missense_Mutation p.Y15594C 0.14 TCGA-CG-5721-01 2 179497272 179497272 A G TTN Silent p.S14487S 0.23 TCGA-CG-5721-01 2 179505298 179505298 T - TTN Frame_Shift_Del p.R13565Gfs*33 0.19 TCGA-CG-5721-01 2 179540660 179540660 G A TTN Missense_Mutation p.P11481S 0.32 TCGA-CG-5721-01 2 179553404 179553404 C A TTN Missense_Mutation p.V10733L 0.22 TCGA-CG-5721-01 2 179575918 179575918 T C TTN Missense_Mutation p.T9349A 0.23 TCGA-CG-5721-01 2 179593250 179593250 C G TTN Missense_Mutation p.C6468S 0.10 TCGA-CG-5721-01 2 179616447 179616447 A G TTN Intron 0.19 TCGA-CG-5721-01 2 179640599 179640599 G A TTN Missense_Mutation p.R1998C 0.17 TCGA-CG-5721-01 2 179659647 179659647 A C TTN Splice_Site p.X415_splice 0.21 TCGA-CG-5721-01 2 179981458 179981458 G A SESTD1 Silent p.G528G 0.21 TCGA-CG-5721-01 2 181927574 181927574 G A UBE2E3 Missense_Mutation p.D195N 0.14 tolerated(0.11) possibly_damaging(0.755) TCGA-CG-5721-01 2 182346369 182346369 G A ITGA4 Missense_Mutation p.E267K 0.24 deleterious(0) possibly_damaging(0.504) TCGA-CG-5721-01 2 182358109 182358109 A G ITGA4 Missense_Mutation p.N404S 0.05 deleterious(0.01) probably_damaging(0.998) TCGA-CG-5721-01 2 183595815 183595815 T - DNAJC10 Frame_Shift_Del p.C264Vfs*8 0.22 TCGA-CG-5721-01 2 183730857 183730857 A G FRZB Missense_Mutation p.Y142H 0.20 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 2 183817966 183817966 T C NCKAP1 Silent p.V755V 0.17 TCGA-CG-5721-01 2 185731181 185731181 A G ZNF804A Missense_Mutation p.Y66C 0.16 deleterious(0) probably_damaging(0.998) TCGA-CG-5721-01 2 186678590 186678590 A G FSIP2 Missense_Mutation p.S6805G 0.20 possibly_damaging(0.716) TCGA-CG-5721-01 2 187360023 187360023 A G ZC3H15 Missense_Mutation p.T47A 0.20 tolerated(0.25) benign(0.027) TCGA-CG-5721-01 2 187625956 187625956 T C FAM171B Missense_Mutation p.Y377H 0.24 tolerated(0.35) probably_damaging(1) TCGA-CG-5721-01 2 189873812 189873812 A G COL3A1 Missense_Mutation p.N1230D 0.16 unknown(0) TCGA-CG-5721-01 2 190541334 190541334 C T ANKAR Missense_Mutation p.R40W 0.19 deleterious(0) probably_damaging(0.987) TCGA-CG-5721-01 2 190608058 190608058 C T ANKAR Missense_Mutation p.R1290C 0.25 deleterious(0.01) probably_damaging(1) TCGA-CG-5721-01 2 191894396 191894396 C T STAT4 3'UTR 0.32 TCGA-CG-5721-01 2 192700728 192700728 G A SDPR Missense_Mutation p.A400V 0.23 tolerated_low_confidence(0.29) benign(0.001) TCGA-CG-5721-01 2 196593047 196593047 T C SLC39A10 Missense_Mutation p.F771L 0.20 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 2 196640613 196640613 T C DNAH7 Missense_Mutation p.Q3720R 0.24 tolerated(0.51) possibly_damaging(0.833) TCGA-CG-5721-01 2 196722321 196722321 T - DNAH7 Frame_Shift_Del p.I2732Lfs*15 0.23 TCGA-CG-5721-01 2 196746539 196746539 C A DNAH7 Missense_Mutation p.G1981W 0.15 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 2 196765042 196765042 G A DNAH7 Silent p.A1504A 0.15 TCGA-CG-5721-01 2 196825620 196825620 A G DNAH7 Missense_Mutation p.V752A 0.20 tolerated(0.7) benign(0) TCGA-CG-5721-01 2 197004484 197004484 T C STK17B Silent p.T232T 0.17 TCGA-CG-5721-01 2 197021224 197021224 G A STK17B Missense_Mutation p.R92C 0.20 tolerated(0.11) benign(0.012) TCGA-CG-5721-01 2 197298107 197298107 C T HECW2 Missense_Mutation p.R14H 0.19 deleterious_low_confidence(0.05) probably_damaging(0.996) TCGA-CG-5721-01 2 197643670 197643670 A G GTF3C3 Missense_Mutation p.L447P 0.13 deleterious(0) probably_damaging(0.998) TCGA-CG-5721-01 2 197662543 197662543 G T GTF3C3 Silent p.S64S 0.18 TCGA-CG-5721-01 2 198268397 198268397 A G SF3B1 Missense_Mutation p.L544P 0.23 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 2 198405143 198405143 T A HSPE1-MOB4 Silent p.A148A 0.22 TCGA-CG-5721-01 2 198953591 198953591 G A PLCL1 Missense_Mutation p.V909M 0.18 deleterious(0.04) benign(0.154) TCGA-CG-5721-01 2 198968586 198968586 G T PLCL1 Missense_Mutation p.A1011S 0.06 tolerated(0.51) benign(0.004) TCGA-CG-5721-01 2 201304024 201304024 A C SPATS2L Missense_Mutation p.K209Q 0.24 tolerated(0.41) possibly_damaging(0.529) TCGA-CG-5721-01 2 201332111 201332111 G A SPATS2L Missense_Mutation p.A316T 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-CG-5721-01 2 201950221 201950221 T C NDUFB3 Silent p.S60S 0.25 TCGA-CG-5721-01 2 202003608 202003608 A G CFLAR Intron 0.12 TCGA-CG-5721-01 2 202344807 202344807 A G STRADB Missense_Mutation p.N389S 0.17 tolerated(0.64) benign(0) TCGA-CG-5721-01 2 203242133 203242133 T C BMPR2 5'UTR 0.14 TCGA-CG-5721-01 2 204161589 204161589 A G CYP20A1 Silent p.S449S 0.14 TCGA-CG-5721-01 2 204305798 204305798 G - RAPH1 Frame_Shift_Del p.N706Mfs*23 0.26 TCGA-CG-5721-01 2 204326092 204326092 T - RAPH1 Frame_Shift_Del p.T284Qfs*2 0.22 TCGA-CG-5721-01 2 204354576 204354576 C T RAPH1 Missense_Mutation p.D155N 0.21 probably_damaging(0.996) TCGA-CG-5721-01 2 206166298 206166298 A - PARD3B Frame_Shift_Del p.T775Rfs*13 0.23 TCGA-CG-5721-01 2 206580934 206580934 T A NRP2 Missense_Mutation p.I90N 0.23 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 2 206581054 206581054 G A NRP2 Missense_Mutation p.R130Q 0.20 tolerated(0.1) possibly_damaging(0.875) TCGA-CG-5721-01 2 207172526 207172526 A - ZDBF2 Frame_Shift_Del p.I1094* 0.16 TCGA-CG-5721-01 2 207173178 207173178 T C ZDBF2 Missense_Mutation p.L1309P 0.18 deleterious(0.02) possibly_damaging(0.766) TCGA-CG-5721-01 2 207426927 207426927 T C ADAM23 Missense_Mutation p.Y419H 0.14 deleterious(0) probably_damaging(0.98) TCGA-CG-5721-01 2 208607011 208607011 T C CCNYL1 Missense_Mutation p.V144A 0.18 deleterious(0) benign(0.373) TCGA-CG-5721-01 2 208994373 208994373 C T CRYGC Missense_Mutation p.R15H 0.26 tolerated(0.11) benign(0.128) TCGA-CG-5721-01 2 209025577 209025577 C - CRYGA Frame_Shift_Del p.G159Vfs*9 0.28 TCGA-CG-5721-01 2 209150475 209150475 T C PIKFYVE Silent p.C213C 0.22 TCGA-CG-5721-01 2 209200094 209200094 G A PIKFYVE Missense_Mutation p.A1403T 0.16 tolerated(0.36) benign(0.001) TCGA-CG-5721-01 2 210560125 210560125 C T MAP2 Silent p.D1077D 0.23 TCGA-CG-5721-01 2 210594919 210594919 A C MAP2 Missense_Mutation p.K1761T 0.27 deleterious(0) probably_damaging(0.98) TCGA-CG-5721-01 2 211319864 211319864 T C LANCL1 Missense_Mutation p.N125S 0.13 tolerated(0.11) benign(0) TCGA-CG-5721-01 2 211502472 211502472 T A CPS1 Missense_Mutation p.F918I 0.17 deleterious(0) possibly_damaging(0.688) TCGA-CG-5721-01 2 212248193 212248193 A G ERBB4 3'UTR 0.38 TCGA-CG-5721-01 2 21242613 21242613 G A APOB Missense_Mutation p.P994L 0.18 probably_damaging(0.999) TCGA-CG-5721-01 2 212989574 212989574 T C ERBB4 Missense_Mutation p.Y46C 0.31 deleterious(0) probably_damaging(0.998) TCGA-CG-5721-01 2 212989624 212989624 A G ERBB4 Silent p.C29C 0.18 TCGA-CG-5721-01 2 215440456 215440456 A G VWC2L Missense_Mutation p.E194G 0.15 tolerated(0.06) benign(0.056) TCGA-CG-5721-01 2 215813766 215813766 G A ABCA12 Silent p.T2320T 0.15 TCGA-CG-5721-01 2 216240093 216240093 G A FN1 Missense_Mutation p.R2001C 0.23 deleterious(0) possibly_damaging(0.874) TCGA-CG-5721-01 2 216279450 216279450 T C FN1 Intron 0.38 TCGA-CG-5721-01 2 218682425 218682425 A G TNS1 Missense_Mutation p.Y1440H 0.17 deleterious(0) possibly_damaging(0.466) TCGA-CG-5721-01 2 219526551 219526551 G A BCS1L Missense_Mutation p.R177H 0.25 deleterious(0) possibly_damaging(0.691) TCGA-CG-5721-01 2 219536804 219536804 T C STK36 5'UTR 0.50 TCGA-CG-5721-01 2 219554645 219554645 A G STK36 Missense_Mutation p.T542A 0.13 tolerated(0.2) benign(0.002) TCGA-CG-5721-01 2 219602475 219602475 G T TTLL4 Missense_Mutation p.G26C 0.15 deleterious(0.01) possibly_damaging(0.868) TCGA-CG-5721-01 2 219603313 219603313 A G TTLL4 Missense_Mutation p.Y305C 0.22 tolerated(0.2) benign(0.003) TCGA-CG-5721-01 2 219694778 219694778 G A PRKAG3 Missense_Mutation p.R186C 0.14 deleterious(0.01) benign(0.39) TCGA-CG-5721-01 2 219746929 219746929 G A WNT10A Missense_Mutation p.V54M 0.20 deleterious(0.01) possibly_damaging(0.483) TCGA-CG-5721-01 2 219892999 219892999 G - CCDC108 Frame_Shift_Del p.P592Lfs*8 0.22 TCGA-CG-5721-01 2 219942915 219942915 G A NHEJ1 Missense_Mutation p.A201V 0.19 tolerated(0.85) benign(0.009) TCGA-CG-5721-01 2 220075831 220075831 C A ABCB6 Splice_Site p.X657_splice 0.21 TCGA-CG-5721-01 2 220080754 220080754 C T ABCB6 Silent p.A373A 0.25 TCGA-CG-5721-01 2 220136569 220136569 T C TUBA4B RNA 0.24 TCGA-CG-5721-01 2 220309422 220309422 C T SPEG Missense_Mutation p.R146C 0.19 possibly_damaging(0.518) TCGA-CG-5721-01 2 220333749 220333749 G A SPEG Missense_Mutation p.R1157Q 0.24 probably_damaging(0.964) TCGA-CG-5721-01 2 220416496 220416496 T C OBSL1 Missense_Mutation p.H1813R 0.19 tolerated(0.95) benign(0.002) TCGA-CG-5721-01 2 220428124 220428124 T C OBSL1 Missense_Mutation p.Q878R 0.30 deleterious(0.03) probably_damaging(0.909) TCGA-CG-5721-01 2 220431818 220431818 T G OBSL1 Missense_Mutation p.E623A 0.16 deleterious(0.01) benign(0.161) TCGA-CG-5721-01 2 220502890 220502890 G A SLC4A3 Missense_Mutation p.R951H 0.12 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 2 220503505 220503505 T C SLC4A3 Silent p.R1006R 0.16 TCGA-CG-5721-01 2 222298873 222298873 A G EPHA4 Missense_Mutation p.S829P 0.18 deleterious(0) possibly_damaging(0.805) TCGA-CG-5721-01 2 224763705 224763705 A G WDFY1 Missense_Mutation p.S190P 0.19 deleterious(0.03) possibly_damaging(0.632) TCGA-CG-5721-01 2 225740890 225740890 T C DOCK10 Missense_Mutation p.T266A 0.18 tolerated(0.17) probably_damaging(0.999) TCGA-CG-5721-01 2 227871956 227871956 A G COL4A4 3'UTR 0.23 TCGA-CG-5721-01 2 228121099 228121099 A G COL4A3 Missense_Mutation p.E325G 0.20 probably_damaging(0.965) TCGA-CG-5721-01 2 228125809 228125809 C - COL4A3 Frame_Shift_Del p.G378Efs*22 0.14 TCGA-CG-5721-01 2 228552887 228552887 T A SLC19A3 Missense_Mutation p.I437F 0.18 deleterious(0.01) possibly_damaging(0.616) TCGA-CG-5721-01 2 228563875 228563875 A G SLC19A3 Missense_Mutation p.F186L 0.16 tolerated(0.32) benign(0.007) TCGA-CG-5721-01 2 228973586 228973586 T - SPHKAP Frame_Shift_Del p.I70Lfs*4 0.16 TCGA-CG-5721-01 2 230683187 230683187 C T TRIP12 Missense_Mutation p.D450N 0.19 tolerated(0.05) possibly_damaging(0.684) TCGA-CG-5721-01 2 230723955 230723955 C T TRIP12 Missense_Mutation p.R145Q 0.20 tolerated_low_confidence(0.36) benign(0.019) TCGA-CG-5721-01 2 231254679 231254679 T C SP140L Missense_Mutation p.L302S 0.15 tolerated(0.65) benign(0.219) TCGA-CG-5721-01 2 231331847 231331847 A G SP100 Missense_Mutation p.D403G 0.19 tolerated(0.15) probably_damaging(0.932) TCGA-CG-5721-01 2 231941799 231941799 G A PSMD1 Missense_Mutation p.E332K 0.17 tolerated(0.12) benign(0.023) TCGA-CG-5721-01 2 231973323 231973323 T C HTR2B Missense_Mutation p.T452A 0.20 tolerated_low_confidence(0.15) benign(0.002) TCGA-CG-5721-01 2 231973661 231973661 G T HTR2B Missense_Mutation p.P339H 0.23 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 2 232577979 232577980 - A PTMA 3'UTR 0.29 TCGA-CG-5721-01 2 233194613 233194613 C - DIS3L2 Frame_Shift_Del p.P612Rfs*33 0.28 TCGA-CG-5721-01 2 233527579 233527579 G C EFHD1 Missense_Mutation p.A124P 0.30 deleterious(0) probably_damaging(0.996) TCGA-CG-5721-01 2 233744193 233744194 - G NGEF 3'UTR 0.31 TCGA-CG-5721-01 2 233897415 233897415 G A NEU2 Missense_Mutation p.V12M 0.15 tolerated(0.06) benign(0.063) TCGA-CG-5721-01 2 234590941 234590941 T - UGT1A7 Frame_Shift_Del p.S122Qfs*12 0.18 TCGA-CG-5721-01 2 236649676 236649676 G C AGAP1 Missense_Mutation p.G127A 0.17 tolerated(0.06) benign(0.058) TCGA-CG-5721-01 2 238257297 238257297 C T COL6A3 Missense_Mutation p.G2297R 0.13 unknown(0) TCGA-CG-5721-01 2 238287506 238287506 T A COL6A3 Missense_Mutation p.D757V 0.18 possibly_damaging(0.893) TCGA-CG-5721-01 2 238303834 238303834 A G COL6A3 Silent p.G35G 0.15 TCGA-CG-5721-01 2 238725821 238725821 A G RBM44 Missense_Mutation p.T88A 0.17 tolerated(0.29) benign(0.046) TCGA-CG-5721-01 2 238925217 238925217 A G UBE2F Missense_Mutation p.Y75C 0.22 deleterious(0.01) probably_damaging(0.916) TCGA-CG-5721-01 2 238990408 238990408 C T SCLY Silent p.L189L 0.06 TCGA-CG-5721-01 2 239079047 239079047 A - ILKAP 3'UTR 0.21 TCGA-CG-5721-01 2 239181712 239181712 G A PER2 Missense_Mutation p.A190V 0.17 tolerated(0.46) benign(0.004) TCGA-CG-5721-01 2 241404053 241404053 G A GPC1 Missense_Mutation p.D302N 0.18 deleterious(0.04) possibly_damaging(0.46) TCGA-CG-5721-01 2 241465157 241465157 T C ANKMY1 Missense_Mutation p.Y338C 0.21 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 2 242181959 242181959 T C HDLBP Silent p.S695S 0.21 TCGA-CG-5721-01 2 242187454 242187454 T - HDLBP Frame_Shift_Del p.K565Nfs*89 0.16 TCGA-CG-5721-01 2 242432345 242432345 A G FARP2 Missense_Mutation p.N930S 0.22 deleterious(0.01) possibly_damaging(0.491) TCGA-CG-5721-01 2 242644110 242644110 T A ING5 Missense_Mutation p.L27Q 0.24 deleterious(0) probably_damaging(0.962) TCGA-CG-5721-01 2 242662478 242662478 G A ING5 Missense_Mutation p.D203N 0.27 deleterious(0) probably_damaging(0.968) TCGA-CG-5721-01 2 24480829 24480829 A G ITSN2 Missense_Mutation p.V939A 0.18 tolerated(0.1) unknown(0) TCGA-CG-5721-01 2 24480952 24480952 A G ITSN2 Missense_Mutation p.V898A 0.13 tolerated(0.11) unknown(0) TCGA-CG-5721-01 2 24888673 24888673 T A NCOA1 Missense_Mutation p.L49I 0.20 deleterious(0) probably_damaging(0.971) TCGA-CG-5721-01 2 24928022 24928022 C T NCOA1 Silent p.S339S 0.16 TCGA-CG-5721-01 2 25039542 25039542 C T CENPO Missense_Mutation p.P208S 0.19 deleterious(0.04) probably_damaging(0.979) TCGA-CG-5721-01 2 25062829 25062829 C - ADCY3 Frame_Shift_Del p.G423Afs*19 0.22 TCGA-CG-5721-01 2 25387620 25387620 G A POMC Missense_Mutation p.R8C 0.20 tolerated(0.21) benign(0.004) TCGA-CG-5721-01 2 25468893 25468893 A G DNMT3A Silent p.I490I 0.29 TCGA-CG-5721-01 2 26531808 26531808 T C GPR113 3'Flank 0.11 TCGA-CG-5721-01 2 27000990 27000990 C T SLC35F6 Missense_Mutation p.R243C 0.16 deleterious(0) possibly_damaging(0.667) TCGA-CG-5721-01 2 271876 271876 T C ACP1 Silent p.C18C 0.20 TCGA-CG-5721-01 2 27262941 27262941 A G TMEM214 Missense_Mutation p.T556A 0.11 tolerated(0.61) benign(0.001) TCGA-CG-5721-01 2 27305042 27305042 A G EMILIN1 Silent p.G201G 0.19 TCGA-CG-5721-01 2 27351433 27351433 T C ABHD1 Missense_Mutation p.V80A 0.15 tolerated(0.53) benign(0.005) TCGA-CG-5721-01 2 27430127 27430127 T C SLC5A6 Missense_Mutation p.E131G 0.19 deleterious(0) probably_damaging(0.996) TCGA-CG-5721-01 2 27439752 27439752 C A ATRAID Missense_Mutation p.A264D 0.13 deleterious(0.02) benign(0.017) TCGA-CG-5721-01 2 27444118 27444118 A G CAD Silent p.A85A 0.20 TCGA-CG-5721-01 2 27598544 27598544 A G SNX17 Missense_Mutation p.T316A 0.16 deleterious(0.04) probably_damaging(0.947) TCGA-CG-5721-01 2 27682634 27682634 C - IFT172 Frame_Shift_Del p.D862Tfs*42 0.26 TCGA-CG-5721-01 2 27802997 27802997 A G C2orf16 Silent p.R1186R 0.20 TCGA-CG-5721-01 2 27854759 27854759 T C GPN1 Missense_Mutation p.F116L 0.21 deleterious(0.02) probably_damaging(0.986) TCGA-CG-5721-01 2 27994648 27994648 T C MRPL33 Missense_Mutation p.F2L 0.21 tolerated_low_confidence(0.15) benign(0.001) TCGA-CG-5721-01 2 28081321 28081321 C T RBKS Silent p.T69T 0.26 TCGA-CG-5721-01 2 28631696 28631696 G A FOSL2 Missense_Mutation p.R142Q 0.20 deleterious(0) probably_damaging(0.998) TCGA-CG-5721-01 2 29124900 29124900 T C WDR43 Silent p.S91S 0.11 TCGA-CG-5721-01 2 29498087 29498087 C T ALK Missense_Mutation p.G640E 0.24 deleterious(0.03) possibly_damaging(0.548) TCGA-CG-5721-01 2 30756115 30756115 G A LCLAT1 Missense_Mutation p.R138Q 0.17 deleterious(0.01) possibly_damaging(0.619) TCGA-CG-5721-01 2 31598297 31598299 GAA - XDH In_Frame_Del p.F517del 0.14 TCGA-CG-5721-01 2 32658760 32658760 T C BIRC6 Silent p.C1099C 0.28 TCGA-CG-5721-01 2 32664624 32664624 T C BIRC6 Missense_Mutation p.V1227A 0.36 benign(0.112) TCGA-CG-5721-01 2 32667130 32667130 T C BIRC6 Intron 0.21 TCGA-CG-5721-01 2 33586574 33586574 A G LTBP1 Missense_Mutation p.N1421S 0.13 tolerated(0.68) benign(0.001) TCGA-CG-5721-01 2 33810704 33810704 T - FAM98A Frame_Shift_Del p.T261Lfs*19 0.23 TCGA-CG-5721-01 2 3405587 3405588 - A TRAPPC12 Frame_Shift_Ins p.A365Sfs*81 0.19 TCGA-CG-5721-01 2 36970392 36970392 G A VIT Missense_Mutation p.V90I 0.20 tolerated(1) benign(0.012) TCGA-CG-5721-01 2 37132754 37132754 A G STRN Silent p.G140G 0.20 TCGA-CG-5721-01 2 37594397 37594397 A T QPCT Missense_Mutation p.D190V 0.18 deleterious(0.04) possibly_damaging(0.791) TCGA-CG-5721-01 2 38231304 38231304 A G RMDN2 Missense_Mutation p.Q553R 0.16 tolerated(0.3) benign(0.03) TCGA-CG-5721-01 2 38525536 38525536 T C ATL2 Missense_Mutation p.K461R 0.21 deleterious(0.04) benign(0.161) TCGA-CG-5721-01 2 39237753 39237753 T C SOS1 Missense_Mutation p.T828A 0.19 deleterious(0) probably_damaging(0.912) TCGA-CG-5721-01 2 42284920 42284920 A G PKDCC 3'UTR 0.36 TCGA-CG-5721-01 2 42578469 42578469 G A COX7A2L Nonsense_Mutation p.R79* 0.15 TCGA-CG-5721-01 2 44115637 44115637 C T LRPPRC 3'UTR 0.20 TCGA-CG-5721-01 2 44187750 44187750 A G LRPPRC Silent p.S504S 0.19 TCGA-CG-5721-01 2 45233498 45233498 G - SIX2 Frame_Shift_Del p.A230Hfs*68 0.19 TCGA-CG-5721-01 2 45236051 45236051 A G SIX2 Missense_Mutation p.Y67H 0.19 deleterious(0) probably_damaging(0.99) TCGA-CG-5721-01 2 47656978 47656978 A - MSH2 Frame_Shift_Del p.K392Rfs*20 0.21 TCGA-CG-5721-01 2 48027122 48027122 A T MSH6 Missense_Mutation p.D667V 0.18 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 2 48027725 48027725 T C MSH6 Missense_Mutation p.M868T 0.22 tolerated(0.23) benign(0.077) TCGA-CG-5721-01 2 48808756 48808756 T C STON1-GTF2A1L Silent p.C328C 0.19 TCGA-CG-5721-01 2 48872208 48872208 G A STON1-GTF2A1L Missense_Mutation p.G818S 0.15 tolerated(0.31) probably_damaging(1) TCGA-CG-5721-01 2 49190230 49190230 A G FSHR Missense_Mutation p.L577P 0.25 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 2 50464031 50464031 G A NRXN1 Nonsense_Mutation p.R1188* 0.21 TCGA-CG-5721-01 2 51254957 51254957 C T NRXN1 Missense_Mutation p.G152D 0.30 tolerated(1) benign(0.062) TCGA-CG-5721-01 2 54125072 54125072 A G PSME4 Silent p.L1181L 0.16 TCGA-CG-5721-01 2 54873365 54873365 G A SPTBN1 Missense_Mutation p.R1540H 0.19 deleterious(0.01) benign(0.087) TCGA-CG-5721-01 2 54887276 54887277 - T SPTBN1 Intron 0.26 TCGA-CG-5721-01 2 55449384 55449384 T C CLHC1 Missense_Mutation p.N55S 0.20 tolerated(0.07) possibly_damaging(0.507) TCGA-CG-5721-01 2 55470795 55470795 G A MTIF2 Missense_Mutation p.R441C 0.23 deleterious(0.02) benign(0.064) TCGA-CG-5721-01 2 55573429 55573429 T C CCDC88A Missense_Mutation p.Y308C 0.24 deleterious(0) probably_damaging(0.967) TCGA-CG-5721-01 2 61019297 61019297 G T PAPOLG Nonsense_Mutation p.G518* 0.17 TCGA-CG-5721-01 2 61361409 61361409 A G KIAA1841 Intron 0.25 TCGA-CG-5721-01 2 62228080 62228080 T C COMMD1 Missense_Mutation p.V142A 0.19 tolerated(0.07) benign(0.058) TCGA-CG-5721-01 2 62728284 62728284 T C TMEM17 3'UTR 0.17 TCGA-CG-5721-01 2 62991483 62991483 T C EHBP1 Missense_Mutation p.V82A 0.22 deleterious(0.04) probably_damaging(0.953) TCGA-CG-5721-01 2 63092036 63092036 A C EHBP1 Missense_Mutation p.I345L 0.12 tolerated(0.29) benign(0.001) TCGA-CG-5721-01 2 63176256 63176256 A G EHBP1 Missense_Mutation p.T794A 0.10 tolerated_low_confidence(0.25) benign(0.001) TCGA-CG-5721-01 2 63631685 63631685 C T WDPCP Silent p.E311E 0.21 TCGA-CG-5721-01 2 63832446 63832446 G T MDH1 Missense_Mutation p.K254N 0.28 tolerated(0.12) probably_damaging(0.926) TCGA-CG-5721-01 2 64779360 64779360 C T AFTPH Missense_Mutation p.A251V 0.14 tolerated(0.21) benign(0.005) TCGA-CG-5721-01 2 65305008 65305011 AAGA - CEP68 Frame_Shift_Del p.K673Ifs*2 0.30 TCGA-CG-5721-01 2 65482703 65482703 T C ACTR2 Missense_Mutation p.F209L 0.23 tolerated(0.16) benign(0.433) TCGA-CG-5721-01 2 70915174 70915174 C A ADD2 Missense_Mutation p.Q310H 0.18 tolerated(0.31) probably_damaging(0.995) TCGA-CG-5721-01 2 71163109 71163109 C T ATP6V1B1 Missense_Mutation p.P9S 0.17 tolerated_low_confidence(0.39) benign(0) TCGA-CG-5721-01 2 71187158 71187158 C A ATP6V1B1 Missense_Mutation p.R179S 0.24 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 2 71576963 71576963 G A ZNF638 Missense_Mutation p.M293I 0.18 tolerated(0.11) benign(0.243) TCGA-CG-5721-01 2 71626730 71626730 G - ZNF638 Frame_Shift_Del p.N849Mfs*11 0.17 TCGA-CG-5721-01 2 7170296 7170296 C T RNF144A Missense_Mutation p.R233W 0.15 deleterious(0) probably_damaging(0.982) TCGA-CG-5721-01 2 71788894 71788894 T C DYSF Silent p.G743G 0.20 TCGA-CG-5721-01 2 71906295 71906295 T - DYSF Frame_Shift_Del p.F1999Lfs*6 0.22 TCGA-CG-5721-01 2 73195648 73195648 C T SFXN5 Silent p.T252T 0.16 TCGA-CG-5721-01 2 73455993 73455993 C T PRADC1 Missense_Mutation p.V126M 0.10 deleterious(0) possibly_damaging(0.787) TCGA-CG-5721-01 2 73479961 73479961 G A CCT7 Missense_Mutation p.R535Q 0.21 tolerated(0.6) benign(0) TCGA-CG-5721-01 2 73651914 73651914 A G ALMS1 Missense_Mutation p.D374G 0.15 benign(0.027) TCGA-CG-5721-01 2 74438395 74438395 C T MTHFD2 Missense_Mutation p.A247V 0.23 deleterious(0.01) probably_damaging(0.994) TCGA-CG-5721-01 2 74438806 74438806 C T MTHFD2 Intron 0.28 TCGA-CG-5721-01 2 74474176 74474176 G A SLC4A5 Silent p.V682V 0.21 TCGA-CG-5721-01 2 74597614 74597614 C T DCTN1 Missense_Mutation p.R369H 0.21 deleterious(0) probably_damaging(0.985) TCGA-CG-5721-01 2 74654556 74654556 T C RTKN Missense_Mutation p.D417G 0.20 deleterious(0.01) benign(0.212) TCGA-CG-5721-01 2 74688480 74688480 G A MOGS Silent p.R812R 0.29 TCGA-CG-5721-01 2 74691666 74691666 T G MOGS Missense_Mutation p.Q179P 0.22 tolerated(0.23) benign(0.433) TCGA-CG-5721-01 2 74756004 74756004 T C AUP1 Missense_Mutation p.N133S 0.18 tolerated(0.35) benign(0) TCGA-CG-5721-01 2 75425766 75425766 A G TACR1 Missense_Mutation p.Y99H 0.30 deleterious(0.01) probably_damaging(1) TCGA-CG-5721-01 2 75929230 75929230 A G GCFC2 Intron 0.18 TCGA-CG-5721-01 2 77745646 77745646 T C LRRTM4 Missense_Mutation p.Y450C 0.11 tolerated(0.25) probably_damaging(0.999) TCGA-CG-5721-01 2 80816514 80816514 A C CTNNA2 Missense_Mutation p.D698A 0.12 deleterious(0) possibly_damaging(0.823) TCGA-CG-5721-01 2 85532498 85532498 C - TCF7L1 Frame_Shift_Del p.S323Afs*2 0.26 TCGA-CG-5721-01 2 85571218 85571218 C A RETSAT Missense_Mutation p.K479N 0.18 tolerated(0.16) benign(0.005) TCGA-CG-5721-01 2 85571464 85571464 G A RETSAT Missense_Mutation p.R422C 0.21 tolerated(0.05) benign(0.009) TCGA-CG-5721-01 2 85662598 85662598 T C SH2D6 Silent p.S77S 0.13 TCGA-CG-5721-01 2 86254444 86254444 T C POLR1A 3'UTR 0.20 TCGA-CG-5721-01 2 86352118 86352118 A G PTCD3 Silent p.R239R 0.34 TCGA-CG-5721-01 2 86479109 86479109 C T REEP1 Missense_Mutation p.A137T 0.14 tolerated(0.18) possibly_damaging(0.537) TCGA-CG-5721-01 2 86849989 86849990 - A RNF103-CHMP3 Intron 0.21 TCGA-CG-5721-01 2 88082493 88082493 A - RGPD2 Frame_Shift_Del p.F1350Lfs*25 0.20 TCGA-CG-5721-01 2 8870743 8870743 T C KIDINS220 3'UTR 0.18 TCGA-CG-5721-01 2 8871241 8871241 C T KIDINS220 Missense_Mutation p.R1642Q 0.19 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CG-5721-01 2 8871508 8871508 G A KIDINS220 Missense_Mutation p.P1553L 0.24 tolerated_low_confidence(0.13) benign(0.001) TCGA-CG-5721-01 2 8871749 8871749 G - KIDINS220 Frame_Shift_Del p.L1473Wfs*35 0.21 TCGA-CG-5721-01 2 88828868 88828868 A G TEX37 Missense_Mutation p.H140R 0.23 tolerated_low_confidence(1) benign(0) TCGA-CG-5721-01 2 88879087 88879087 T - EIF2AK3 Frame_Shift_Del p.N612Tfs*3 0.18 TCGA-CG-5721-01 2 88885403 88885403 T C EIF2AK3 Missense_Mutation p.T536A 0.25 deleterious(0.01) possibly_damaging(0.689) TCGA-CG-5721-01 2 8926140 8926140 T - KIDINS220 Frame_Shift_Del p.T654Hfs*34 0.21 TCGA-CG-5721-01 2 89291960 89291960 T C IGKV1-8 Missense_Mutation p.T105A 0.19 tolerated(0.08) benign(0.109) TCGA-CG-5721-01 2 89292029 89292029 A G IGKV1-8 Missense_Mutation p.F82L 0.21 deleterious(0.01) benign(0.433) TCGA-CG-5721-01 2 89545016 89545016 T C IGKV2-30 Missense_Mutation p.M12V 0.13 tolerated(0.24) benign(0.003) TCGA-CG-5721-01 2 8967216 8967216 A G KIDINS220 Missense_Mutation p.V3A 0.28 tolerated(0.18) benign(0.007) TCGA-CG-5721-01 2 90260033 90260033 C T IGKV1D-8 Missense_Mutation p.R46W 0.22 deleterious(0.04) benign(0.106) TCGA-CG-5721-01 2 90458664 90458664 A G CH17-132F21.1 Missense_Mutation p.T114A 0.03 TCGA-CG-5721-01 2 95537557 95537557 C T TEKT4 Missense_Mutation p.A78V 0.21 deleterious(0.02) benign(0.365) TCGA-CG-5721-01 2 95719178 95719178 T C MAL Missense_Mutation p.L147S 0.19 deleterious(0.02) probably_damaging(0.964) TCGA-CG-5721-01 2 95847341 95847341 A G ZNF2 Silent p.K256K 0.20 TCGA-CG-5721-01 2 95953207 95953209 GAG - PROM2 In_Frame_Del 0.23 TCGA-CG-5721-01 2 9630364 9630364 G A ADAM17 Missense_Mutation p.A806V 0.26 deleterious_low_confidence(0.04) possibly_damaging(0.792) TCGA-CG-5721-01 2 97025921 97025921 A - NCAPH Frame_Shift_Del p.D469Ifs*25 0.19 TCGA-CG-5721-01 2 97216987 97216987 G A ARID5A Missense_Mutation p.R241Q 0.22 deleterious(0.02) probably_damaging(0.997) TCGA-CG-5721-01 2 9727550 9727550 T C YWHAQ Missense_Mutation p.N224S 0.21 deleterious_low_confidence(0) benign(0.418) TCGA-CG-5721-01 2 97377619 97377619 G A LMAN2L Silent p.Y228Y 0.21 TCGA-CG-5721-01 2 97427380 97427380 G A CNNM4 Missense_Mutation p.R215H 0.18 deleterious(0) possibly_damaging(0.735) TCGA-CG-5721-01 2 97530013 97530013 G A SEMA4C Missense_Mutation p.R357C 0.23 deleterious(0) probably_damaging(0.93) TCGA-CG-5721-01 2 98275421 98275421 G A ACTR1B Missense_Mutation p.R121W 0.18 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 2 98411544 98411544 G A TMEM131 Missense_Mutation p.R1079W 0.19 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 2 98872590 98872590 C A VWA3B Silent p.R932R 0.12 TCGA-CG-5721-01 2 99006150 99006150 T C CNGA3 Missense_Mutation p.V160A 0.15 deleterious(0.01) possibly_damaging(0.698) TCGA-CG-5721-01 2 99241967 99241967 A G MGAT4A 3'UTR 0.17 TCGA-CG-5721-01 2 99454683 99454683 C T KIAA1211L Silent p.P46P 0.20 TCGA-CG-5721-01 2 99636888 99636888 C T TSGA10 Missense_Mutation p.A558T 0.14 tolerated(0.72) benign(0.011) TCGA-CG-5721-01 2 99787981 99787981 T C MITD1 Missense_Mutation p.T128A 0.17 tolerated(0.51) benign(0.002) TCGA-CG-5721-01 2 99909004 99909004 T C LYG1 Missense_Mutation p.Y48C 0.22 tolerated(0.06) benign(0.056) TCGA-CG-5721-01 3 100945648 100945648 C T IMPG2 3'UTR 0.50 TCGA-CG-5721-01 3 101060559 101060559 T C SENP7 Missense_Mutation p.Y724C 0.24 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 3 101083732 101083732 A G SENP7 Silent p.S474S 0.13 TCGA-CG-5721-01 3 101384247 101384247 G A ZBTB11 Missense_Mutation p.A395V 0.24 tolerated(0.37) benign(0) TCGA-CG-5721-01 3 101571028 101571029 AT - NFKBIZ Frame_Shift_Del p.H130Qfs*11 0.22 TCGA-CG-5721-01 3 10264468 10264468 C T IRAK2 Missense_Mutation p.R388W 0.24 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 3 105271332 105271332 A G ALCAM Missense_Mutation p.N523D 0.17 tolerated(0.11) benign(0.119) TCGA-CG-5721-01 3 105400628 105400628 T C CBLB Missense_Mutation p.T746A 0.06 tolerated_low_confidence(0.3) benign(0) TCGA-CG-5721-01 3 107938290 107938290 T C IFT57 Silent p.T114T 0.21 TCGA-CG-5721-01 3 107941070 107941070 G A IFT57 Missense_Mutation p.P34S 0.23 deleterious(0) probably_damaging(0.99) TCGA-CG-5721-01 3 108147575 108147575 T C MYH15 Missense_Mutation p.T1176A 0.04 deleterious(0.01) benign(0.052) TCGA-CG-5721-01 3 108224573 108224573 T C MYH15 Silent p.G84G 0.25 TCGA-CG-5721-01 3 108282076 108282076 T C KIAA1524 Missense_Mutation p.T511A 0.20 tolerated(0.25) benign(0.02) TCGA-CG-5721-01 3 108682336 108682336 A T MORC1 Missense_Mutation p.N908K 0.19 tolerated(0.76) benign(0) TCGA-CG-5721-01 3 10916650 10916650 T C SLC6A11 Missense_Mutation p.V254A 0.20 tolerated(0.05) benign(0.032) TCGA-CG-5721-01 3 11078588 11078588 G A SLC6A1 Missense_Mutation p.R579H 0.18 tolerated(0.44) benign(0.002) TCGA-CG-5721-01 3 111927065 111927065 T C SLC9C1 Missense_Mutation p.Y649C 0.17 deleterious(0.02) probably_damaging(0.928) TCGA-CG-5721-01 3 111997623 111997623 T C SLC9C1 Missense_Mutation p.T91A 0.17 tolerated(0.65) benign(0.004) TCGA-CG-5721-01 3 112324479 112324479 G T CCDC80 Missense_Mutation p.P880T 0.14 deleterious(0.04) probably_damaging(1) TCGA-CG-5721-01 3 113115503 113115503 A T WDR52 Missense_Mutation p.D547E 0.24 deleterious(0.01) possibly_damaging(0.714) TCGA-CG-5721-01 3 113184570 113184570 T C SPICE1 Missense_Mutation p.D406G 0.20 deleterious(0) possibly_damaging(0.794) TCGA-CG-5721-01 3 113321913 113321913 G A SIDT1 Silent p.Q393Q 0.27 TCGA-CG-5721-01 3 113329934 113329934 C T SIDT1 Silent p.S600S 0.19 TCGA-CG-5721-01 3 113847607 113847607 T C DRD3 Missense_Mutation p.N387D 0.03 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 3 113890604 113890604 G A DRD3 Missense_Mutation p.A79V 0.14 deleterious(0) probably_damaging(0.994) TCGA-CG-5721-01 3 114035389 114035389 T C MIR568 RNA 0.18 TCGA-CG-5721-01 3 114057787 114057787 T - ZBTB20 3'UTR 0.18 TCGA-CG-5721-01 3 114058003 114058003 G - ZBTB20 Frame_Shift_Del p.P692Lfs*43 0.26 TCGA-CG-5721-01 3 114069373 114069373 C T ZBTB20 Missense_Mutation p.G518S 0.18 tolerated(0.31) probably_damaging(0.986) TCGA-CG-5721-01 3 114069493 114069493 G A ZBTB20 Missense_Mutation p.R478C 0.26 deleterious(0.01) probably_damaging(0.973) TCGA-CG-5721-01 3 118945806 118945806 C T B4GALT4 Silent p.R112R 0.19 TCGA-CG-5721-01 3 119120876 119120876 G A ARHGAP31 Missense_Mutation p.R426Q 0.13 deleterious(0.01) probably_damaging(0.997) TCGA-CG-5721-01 3 119121036 119121036 C T ARHGAP31 Silent p.N479N 0.09 TCGA-CG-5721-01 3 119452224 119452224 T C MAATS1 Silent p.L405L 0.16 TCGA-CG-5721-01 3 120352070 120352071 - G HGD Frame_Shift_Ins p.H371Pfs*4 0.19 TCGA-CG-5721-01 3 121207128 121207128 A G POLQ Silent p.C1550C 0.15 TCGA-CG-5721-01 3 121263572 121263572 A G POLQ Splice_Site p.X115_splice 0.21 TCGA-CG-5721-01 3 121409831 121409831 C T GOLGB1 Missense_Mutation p.A2794T 0.19 benign(0.005) TCGA-CG-5721-01 3 121415161 121415161 T C GOLGB1 Silent p.Q1403Q 0.05 TCGA-CG-5721-01 3 121417318 121417318 A G GOLGB1 Silent p.G684G 0.22 TCGA-CG-5721-01 3 121712306 121712306 T C ILDR1 Silent p.A430A 0.22 TCGA-CG-5721-01 3 122003712 122003712 G A CASR Missense_Mutation p.G981S 0.15 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CG-5721-01 3 12208796 12208796 C T SYN2 RNA 0.19 TCGA-CG-5721-01 3 122335917 122335917 T C PARP15 Silent p.G302G 0.07 TCGA-CG-5721-01 3 122345823 122345823 A - PARP15 Frame_Shift_Del p.R463Efs*7 0.23 TCGA-CG-5721-01 3 122345871 122345871 A G PARP15 Missense_Mutation p.M477V 0.23 tolerated(0.45) benign(0.003) TCGA-CG-5721-01 3 122459176 122459176 T C HSPBAP1 3'UTR 0.19 TCGA-CG-5721-01 3 123021996 123021996 T C ADCY5 Missense_Mutation p.N877S 0.13 tolerated(0.25) benign(0.01) TCGA-CG-5721-01 3 124281903 124281903 G A KALRN Missense_Mutation p.V88M 0.25 tolerated(0.71) possibly_damaging(0.802) TCGA-CG-5721-01 3 124458976 124458976 G - UMPS Frame_Shift_Del p.C365Afs*7 0.21 TCGA-CG-5721-01 3 124487942 124487942 C T ITGB5 Silent p.L645L 0.21 TCGA-CG-5721-01 3 124826845 124826845 G A SLC12A8 Silent p.Y395Y 0.20 TCGA-CG-5721-01 3 124906230 124906230 C T SLC12A8 Missense_Mutation p.V81I 0.26 deleterious(0.02) probably_damaging(0.925) TCGA-CG-5721-01 3 126154470 126154470 G A CCDC37 Missense_Mutation p.R566H 0.11 deleterious(0) probably_damaging(0.983) TCGA-CG-5721-01 3 126222903 126222903 T C UROC1 Silent p.K279K 0.12 TCGA-CG-5721-01 3 126733642 126733642 C T PLXNA1 Missense_Mutation p.R949C 0.19 deleterious(0) probably_damaging(0.912) TCGA-CG-5721-01 3 126748346 126748346 T C PLXNA1 Missense_Mutation p.S1613P 0.15 tolerated(0.08) probably_damaging(0.999) TCGA-CG-5721-01 3 126915966 126915966 C T C3orf56 Silent p.G146G 0.23 TCGA-CG-5721-01 3 128627052 128627052 T C ACAD9 Missense_Mutation p.Y435H 0.21 deleterious(0) probably_damaging(0.943) TCGA-CG-5721-01 3 129130176 129130176 C T EFCAB12 Missense_Mutation p.R287K 0.21 tolerated(0.63) benign(0.004) TCGA-CG-5721-01 3 129202433 129202433 C T IFT122 Missense_Mutation p.R638W 0.30 deleterious(0) possibly_damaging(0.54) TCGA-CG-5721-01 3 130346189 130346189 T C COL6A6 Silent p.G1656G 0.17 TCGA-CG-5721-01 3 130394222 130394222 C A COL6A6 Missense_Mutation p.A2258D 0.21 tolerated_low_confidence(0.25) benign(0.002) TCGA-CG-5721-01 3 130613581 130613581 T C ATP2C1 Intron 0.12 TCGA-CG-5721-01 3 130743233 130743233 T C ASTE1 Silent p.L306L 0.26 TCGA-CG-5721-01 3 131082251 131082251 C T NUDT16P1 RNA 0.10 TCGA-CG-5721-01 3 132213065 132213065 T C DNAJC13 Silent p.D1301D 0.18 TCGA-CG-5721-01 3 132257170 132257170 T C DNAJC13 3'UTR 0.13 TCGA-CG-5721-01 3 133098772 133098772 C - TMEM108 Frame_Shift_Del p.S75Hfs*30 0.24 TCGA-CG-5721-01 3 133167397 133167397 A G BFSP2 Missense_Mutation p.I213V 0.19 tolerated(0.07) benign(0.291) TCGA-CG-5721-01 3 133356834 133356834 G A TOPBP1 Silent p.V802V 0.21 TCGA-CG-5721-01 3 133358933 133358933 A G TOPBP1 Silent p.G701G 0.21 TCGA-CG-5721-01 3 133467417 133467417 A G TF Missense_Mutation p.R69G 0.18 deleterious(0.02) benign(0.01) TCGA-CG-5721-01 3 13372109 13372109 G A NUP210 Missense_Mutation p.R1321C 0.26 deleterious(0) possibly_damaging(0.776) TCGA-CG-5721-01 3 135869938 135869938 T C MSL2 3'UTR 0.24 TCGA-CG-5721-01 3 135870304 135870304 A G MSL2 Silent p.V473V 0.21 TCGA-CG-5721-01 3 136057249 136057249 T C STAG1 Missense_Mutation p.D1239G 0.14 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CG-5721-01 3 13670760 13670760 T C FBLN2 Missense_Mutation p.F937S 0.30 deleterious(0.01) benign(0.444) TCGA-CG-5721-01 3 137729094 137729094 G A CLDN18 Silent p.V9V 0.19 TCGA-CG-5721-01 3 138193080 138193080 C T ESYT3 Missense_Mutation p.T785I 0.19 deleterious(0) possibly_damaging(0.688) TCGA-CG-5721-01 3 138665239 138665239 T C FOXL2 Missense_Mutation p.N109S 0.14 deleterious(0) probably_damaging(0.982) TCGA-CG-5721-01 3 13896052 13896052 G A WNT7A Missense_Mutation p.H183Y 0.16 deleterious(0.01) probably_damaging(0.955) TCGA-CG-5721-01 3 139077910 139077910 A G COPB2 Missense_Mutation p.F805S 0.17 deleterious(0.03) benign(0.053) TCGA-CG-5721-01 3 139173585 139173585 C - RBP2 Frame_Shift_Del p.D114Tfs*7 0.23 TCGA-CG-5721-01 3 140406631 140406631 G T TRIM42 Missense_Mutation p.K369N 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-CG-5721-01 3 141162874 141162875 - A ZBTB38 Frame_Shift_Ins p.T551Nfs*9 0.15 TCGA-CG-5721-01 3 141292021 141292021 T C RASA2 Silent p.D439D 0.20 TCGA-CG-5721-01 3 141300007 141300007 A G RASA2 Missense_Mutation p.I580M 0.14 tolerated(0.06) benign(0.048) TCGA-CG-5721-01 3 1414032 1414032 C T CNTN6 Silent p.G514G 0.17 TCGA-CG-5721-01 3 142137699 142137699 T C XRN1 Missense_Mutation p.T400A 0.19 tolerated(1) benign(0) TCGA-CG-5721-01 3 142188315 142188315 A - ATR Frame_Shift_Del p.L2139* 0.15 TCGA-CG-5721-01 3 142423328 142423328 A T PLS1 Missense_Mutation p.D510V 0.25 deleterious(0.05) possibly_damaging(0.796) TCGA-CG-5721-01 3 142430940 142430940 T C PLS1 3'UTR 0.14 TCGA-CG-5721-01 3 142987779 142987779 T C SLC9A9 Missense_Mutation p.T550A 0.25 tolerated(0.46) benign(0.004) TCGA-CG-5721-01 3 145914557 145914557 A G PLSCR4 Silent p.G216G 0.20 TCGA-CG-5721-01 3 147120530 147120530 T C ZIC4 Missense_Mutation p.T69A 0.22 tolerated_low_confidence(1) benign(0) TCGA-CG-5721-01 3 147128763 147128763 A G ZIC1 Silent p.K288K 0.13 TCGA-CG-5721-01 3 14768513 14768513 T C C3orf20 Missense_Mutation p.S558P 0.24 deleterious(0.01) probably_damaging(0.998) TCGA-CG-5721-01 3 149589943 149589943 T C RNF13 Splice_Site p.X107_splice 0.17 TCGA-CG-5721-01 3 150931733 150931733 T C P2RY14 Silent p.V124V 0.18 TCGA-CG-5721-01 3 15094962 15094962 T C MRPS25 Missense_Mutation p.Q85R 0.21 tolerated(0.13) benign(0.119) TCGA-CG-5721-01 3 151046137 151046137 T C P2RY13 Missense_Mutation p.Y236C 0.17 deleterious(0) probably_damaging(0.992) TCGA-CG-5721-01 3 151085530 151085530 G A MED12L Missense_Mutation p.A1107T 0.23 deleterious(0) probably_damaging(0.986) TCGA-CG-5721-01 3 151155548 151155548 T C IGSF10 Silent p.P2267P 0.21 TCGA-CG-5721-01 3 15116352 15116352 C T ZFYVE20 Missense_Mutation p.R431H 0.18 tolerated(0.24) benign(0.001) TCGA-CG-5721-01 3 15131914 15131914 T C ZFYVE20 Missense_Mutation p.Q94R 0.20 deleterious(0) possibly_damaging(0.792) TCGA-CG-5721-01 3 151475230 151475230 A G AADACL2 Missense_Mutation p.T352A 0.15 tolerated(0.16) benign(0.07) TCGA-CG-5721-01 3 155560327 155560327 A G SLC33A1 Missense_Mutation p.V286A 0.21 tolerated(0.81) benign(0.001) TCGA-CG-5721-01 3 156009680 156009680 C T KCNAB1 Intron 0.19 TCGA-CG-5721-01 3 15604967 15604967 T C HACL1 Silent p.T534T 0.22 TCGA-CG-5721-01 3 15609957 15609957 T C HACL1 Missense_Mutation p.N411S 0.17 tolerated(0.26) benign(0.102) TCGA-CG-5721-01 3 15610025 15610025 T C HACL1 Silent p.L388L 0.15 TCGA-CG-5721-01 3 156423065 156423065 T - TIPARP 3'UTR 0.12 TCGA-CG-5721-01 3 15726863 15726863 T C ANKRD28 Missense_Mutation p.I723M 0.18 deleterious(0.02) benign(0.179) TCGA-CG-5721-01 3 158402330 158402330 C T GFM1 Silent p.C594C 0.16 TCGA-CG-5721-01 3 160955951 160955951 G A NMD3 Missense_Mutation p.E210K 0.21 deleterious(0) possibly_damaging(0.456) TCGA-CG-5721-01 3 164700040 164700040 A G SI Silent p.T1802T 0.13 TCGA-CG-5721-01 3 164767648 164767648 A G SI Missense_Mutation p.S510P 0.21 deleterious(0) possibly_damaging(0.901) TCGA-CG-5721-01 3 167196498 167196498 A G WDR49 3'UTR 0.30 TCGA-CG-5721-01 3 167750468 167750468 T C GOLIM4 Missense_Mutation p.H339R 0.14 tolerated(0.86) benign(0.03) TCGA-CG-5721-01 3 170198305 170198305 T C SLC7A14 Missense_Mutation p.Y589C 0.15 tolerated(0.16) possibly_damaging(0.525) TCGA-CG-5721-01 3 171405313 171405313 T C PLD1 Missense_Mutation p.N534S 0.17 tolerated(0.98) benign(0.002) TCGA-CG-5721-01 3 171406516 171406516 C T PLD1 Missense_Mutation p.V497M 0.24 deleterious(0) benign(0.065) TCGA-CG-5721-01 3 171406526 171406526 T C PLD1 Silent p.R493R 0.20 TCGA-CG-5721-01 3 171455811 171455811 T A PLD1 Missense_Mutation p.T11S 0.14 tolerated_low_confidence(0.54) benign(0.008) TCGA-CG-5721-01 3 172065073 172065073 A G FNDC3B Silent p.E812E 0.19 TCGA-CG-5721-01 3 173322505 173322505 G A NLGN1 Silent p.Q39Q 0.20 TCGA-CG-5721-01 3 173998423 173998423 A G NLGN1 Missense_Mutation p.N601S 0.18 tolerated(0.5) benign(0.018) TCGA-CG-5721-01 3 174814922 174814922 T C NAALADL2 Missense_Mutation p.L129P 0.17 deleterious(0) possibly_damaging(0.472) TCGA-CG-5721-01 3 178745553 178745553 A G ZMAT3 Silent p.N146N 0.27 TCGA-CG-5721-01 3 178916944 178916944 A G PIK3CA Missense_Mutation p.K111E 0.17 deleterious(0.03) probably_damaging(0.983) TCGA-CG-5721-01 3 178948070 178948070 A G PIK3CA Missense_Mutation p.K948E 0.18 tolerated(0.09) possibly_damaging(0.634) TCGA-CG-5721-01 3 179322414 179322414 T C MRPL47 5'UTR 0.19 TCGA-CG-5721-01 3 179322596 179322596 T C NDUFB5 5'UTR 0.17 TCGA-CG-5721-01 3 182587084 182587085 - A ATP11B Frame_Shift_Ins p.T613Nfs*7 0.15 TCGA-CG-5721-01 3 182987868 182987868 A G B3GNT5 Silent p.V94V 0.30 TCGA-CG-5721-01 3 182987917 182987918 - G B3GNT5 Frame_Shift_Ins p.N113Qfs*2 0.22 TCGA-CG-5721-01 3 183508661 183508661 T A YEATS2 Missense_Mutation p.V997E 0.22 deleterious_low_confidence(0) benign(0.194) TCGA-CG-5721-01 3 183754156 183754156 G T HTR3D Intron 0.12 TCGA-CG-5721-01 3 183894697 183894697 C T AP2M1 Intron 0.38 TCGA-CG-5721-01 3 183906155 183906155 C T ABCF3 Missense_Mutation p.R266W 0.17 deleterious(0.01) possibly_damaging(0.773) TCGA-CG-5721-01 3 184020206 184020206 T C PSMD2 Silent p.C251C 0.18 TCGA-CG-5721-01 3 184070896 184070896 C - CLCN2 Frame_Shift_Del p.E690Rfs*6 0.26 TCGA-CG-5721-01 3 18428081 18428081 C T SATB1 Missense_Mutation p.R410Q 0.18 deleterious(0) probably_damaging(0.998) TCGA-CG-5721-01 3 184557512 184557512 T C VPS8 Silent p.G169G 0.19 TCGA-CG-5721-01 3 18462397 18462397 A G SATB1 Silent p.S21S 0.15 TCGA-CG-5721-01 3 184801194 184801194 A G C3orf70 Silent p.P118P 0.20 TCGA-CG-5721-01 3 185641624 185641624 A G TRA2B Missense_Mutation p.F161S 0.22 deleterious(0.01) probably_damaging(0.978) TCGA-CG-5721-01 3 185769827 185769827 T C ETV5 Missense_Mutation p.M435V 0.18 deleterious(0) probably_damaging(0.977) TCGA-CG-5721-01 3 186256602 186256602 A G CRYGS Silent p.Y140Y 0.20 TCGA-CG-5721-01 3 186450326 186450326 G A KNG1 Missense_Mutation p.V265M 0.26 tolerated(0.18) benign(0.27) TCGA-CG-5721-01 3 189705372 189705372 A G LEPREL1 Missense_Mutation p.Y348H 0.32 tolerated(0.05) benign(0.179) TCGA-CG-5721-01 3 190126276 190126276 T C CLDN16 Missense_Mutation p.C256R 0.19 deleterious(0) probably_damaging(0.954) TCGA-CG-5721-01 3 190999982 190999982 A - UTS2B 5'UTR 0.17 TCGA-CG-5721-01 3 192517221 192517221 A G MB21D2 Missense_Mutation p.C144R 0.21 tolerated(0.07) possibly_damaging(0.678) TCGA-CG-5721-01 3 193051570 193051570 A - ATP13A5 Frame_Shift_Del p.F414Sfs*4 0.11 TCGA-CG-5721-01 3 193183832 193183832 A G ATP13A4 Silent p.C418C 0.21 TCGA-CG-5721-01 3 194140605 194140605 T C ATP13A3 Intron 0.16 TCGA-CG-5721-01 3 194373752 194373752 T C LSG1 Silent p.S293S 0.21 TCGA-CG-5721-01 3 194387291 194387291 A G LSG1 Silent p.N79N 0.25 TCGA-CG-5721-01 3 195595229 195595229 G - TNK2 Frame_Shift_Del p.P710Rfs*84 0.35 TCGA-CG-5721-01 3 195975110 195975110 T C PCYT1A Missense_Mutation p.N101S 0.28 tolerated(0.21) benign(0.004) TCGA-CG-5721-01 3 196089374 196089376 TCT - UBXN7 In_Frame_Del p.E340del 0.14 TCGA-CG-5721-01 3 196098870 196098870 T A UBXN7 Missense_Mutation p.N171I 0.30 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 3 196460765 196460765 T C PIGX Missense_Mutation p.S275P 0.11 tolerated(0.07) benign(0.125) TCGA-CG-5721-01 3 196539109 196539109 A G PAK2 Missense_Mutation p.T265A 0.21 deleterious(0.03) benign(0.244) TCGA-CG-5721-01 3 196613083 196613083 T C SENP5 Missense_Mutation p.F344S 0.13 tolerated(0.11) benign(0.043) TCGA-CG-5721-01 3 196666226 196666226 A C NCBP2 Silent p.T52T 0.14 TCGA-CG-5721-01 3 196743098 196743098 T C MFI2 Missense_Mutation p.Y348C 0.19 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 3 197420641 197420641 C T KIAA0226 Silent p.S577S 0.10 TCGA-CG-5721-01 3 197430456 197430456 T C KIAA0226 Missense_Mutation p.N178S 0.10 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 3 197701945 197701945 T C LMLN Splice_Site p.X116_splice 0.15 TCGA-CG-5721-01 3 20225109 20225109 T C SGOL1 Silent p.E110E 0.17 TCGA-CG-5721-01 3 27490198 27490198 C T SLC4A7 Missense_Mutation p.R69Q 0.18 deleterious(0.02) benign(0.251) TCGA-CG-5721-01 3 27758600 27758600 T C EOMES Silent p.K674K 0.19 TCGA-CG-5721-01 3 31725576 31725576 G A OSBPL10 Nonsense_Mutation p.R426* 0.17 TCGA-CG-5721-01 3 32201136 32201136 G A GPD1L Missense_Mutation p.R310H 0.19 tolerated(0.3) benign(0.003) TCGA-CG-5721-01 3 32804466 32804466 G A CNOT10 Intron 0.32 TCGA-CG-5721-01 3 33135378 33135378 A G TMPPE Missense_Mutation p.F104L 0.18 tolerated(1) benign(0) TCGA-CG-5721-01 3 35731623 35731623 C T ARPP21 Missense_Mutation p.A179V 0.22 deleterious(0) benign(0.072) TCGA-CG-5721-01 3 35756944 35756944 A G ARPP21 Missense_Mutation p.Q270R 0.10 tolerated(0.78) benign(0.171) TCGA-CG-5721-01 3 36587843 36587843 A G STAC 3'UTR 0.17 TCGA-CG-5721-01 3 36873767 36873767 A T TRANK1 Missense_Mutation p.V2392D 0.17 deleterious(0) probably_damaging(0.979) TCGA-CG-5721-01 3 37032586 37032586 A - EPM2AIP1 3'UTR 0.29 TCGA-CG-5721-01 3 37033280 37033280 T - EPM2AIP1 Frame_Shift_Del p.N430Ifs*2 0.15 TCGA-CG-5721-01 3 37368264 37368264 T C GOLGA4 Silent p.L1651L 0.19 TCGA-CG-5721-01 3 38043035 38043035 A G VILL Missense_Mutation p.Y424C 0.11 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 3 38104179 38104179 A - DLEC1 Frame_Shift_Del p.N329Ifs*26 0.19 TCGA-CG-5721-01 3 38127756 38127756 A G DLEC1 Missense_Mutation p.Y487C 0.15 tolerated(0.05) benign(0.16) TCGA-CG-5721-01 3 38263180 38263180 T C OXSR1 Splice_Site p.X200_splice 0.21 TCGA-CG-5721-01 3 38287645 38287645 G A OXSR1 Missense_Mutation p.G397E 0.20 tolerated(0.32) benign(0.081) TCGA-CG-5721-01 3 38316147 38316147 G A SLC22A13 Missense_Mutation p.G179S 0.24 tolerated(0.15) possibly_damaging(0.893) TCGA-CG-5721-01 3 38603961 38603961 C T SCN5A Missense_Mutation p.R1303Q 0.18 deleterious(0.01) probably_damaging(0.997) TCGA-CG-5721-01 3 38748787 38748787 G A SCN10A Missense_Mutation p.P1457S 0.11 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 3 3886572 3886572 A G LRRN1 Missense_Mutation p.N83D 0.24 deleterious(0.01) benign(0.008) TCGA-CG-5721-01 3 38888509 38888509 A G SCN11A Silent p.D1684D 0.20 TCGA-CG-5721-01 3 38889232 38889232 A G SCN11A Silent p.S1443S 0.22 TCGA-CG-5721-01 3 39111148 39111148 G T WDR48 Missense_Mutation p.W195C 0.20 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 3 39185301 39185302 - G CSRNP1 Frame_Shift_Ins p.M339Hfs*4 0.17 TCGA-CG-5721-01 3 39449253 39449253 T C RPSA Missense_Mutation p.Y37H 0.25 deleterious(0.05) probably_damaging(0.997) TCGA-CG-5721-01 3 40529325 40529325 A G ZNF619 Missense_Mutation p.T482A 0.20 tolerated(0.65) probably_damaging(0.968) TCGA-CG-5721-01 3 41266486 41266486 C T CTNNB1 Nonsense_Mutation p.R95* 0.20 TCGA-CG-5721-01 3 42261039 42261039 A G TRAK1 Missense_Mutation p.T673A 0.20 deleterious(0) probably_damaging(0.986) TCGA-CG-5721-01 3 431057 431057 G A CHL1 Silent p.T790T 0.20 TCGA-CG-5721-01 3 43388884 43388884 C T SNRK Missense_Mutation p.T378M 0.23 tolerated(0.11) benign(0.036) TCGA-CG-5721-01 3 44489669 44489669 G A ZNF445 Silent p.S498S 0.16 TCGA-CG-5721-01 3 44598750 44598750 G A ZKSCAN7 Missense_Mutation p.A71T 0.16 deleterious(0.01) benign(0.216) TCGA-CG-5721-01 3 44683453 44683453 A G ZNF197 Silent p.A277A 0.22 TCGA-CG-5721-01 3 44700847 44700847 A - ZNF35 Frame_Shift_Del p.K332Nfs*199 0.19 TCGA-CG-5721-01 3 44700955 44700955 G A ZNF35 Missense_Mutation p.C367Y 0.19 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 3 44872475 44872475 A G KIF15 Missense_Mutation p.T1046A 0.18 tolerated(0.88) benign(0.002) TCGA-CG-5721-01 3 45000709 45000709 C T ZDHHC3 Missense_Mutation p.V74M 0.19 tolerated(0.28) benign(0.007) TCGA-CG-5721-01 3 45963180 45963181 - A FYCO1 3'UTR 0.29 TCGA-CG-5721-01 3 46062826 46062826 T C XCR1 Missense_Mutation p.Y205C 0.19 deleterious(0) probably_damaging(0.997) TCGA-CG-5721-01 3 46245390 46245390 C T CCR1 Missense_Mutation p.V139M 0.21 deleterious(0) possibly_damaging(0.56) TCGA-CG-5721-01 3 46480816 46480816 G A LTF Missense_Mutation p.R627C 0.18 tolerated(0.2) possibly_damaging(0.537) TCGA-CG-5721-01 3 46721994 46721994 G A ALS2CL Missense_Mutation p.R492C 0.19 tolerated(0.09) probably_damaging(0.989) TCGA-CG-5721-01 3 46784041 46784041 A G PRSS45 Silent p.V162V 0.10 TCGA-CG-5721-01 3 46944090 46944090 A G PTH1R Missense_Mutation p.Y429C 0.21 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 3 47147559 47147559 A G SETD2 Silent p.F1589F 0.18 TCGA-CG-5721-01 3 47161907 47161907 T - SETD2 Frame_Shift_Del p.R1407Gfs*5 0.17 TCGA-CG-5721-01 3 47282448 47282448 A G KIF9 Silent p.G589G 0.18 TCGA-CG-5721-01 3 47318859 47318859 A G KIF9 Silent p.G2G 0.18 TCGA-CG-5721-01 3 47450682 47450682 C T PTPN23 Missense_Mutation p.R558C 0.16 unknown(0) TCGA-CG-5721-01 3 47465457 47465457 C T SCAP Silent p.P372P 0.20 TCGA-CG-5721-01 3 47470135 47470135 A G SCAP Missense_Mutation p.V93A 0.18 deleterious(0) benign(0.065) TCGA-CG-5721-01 3 47651722 47651722 T C SMARCC1 Silent p.E959E 0.18 TCGA-CG-5721-01 3 47747936 47747936 T C SMARCC1 Missense_Mutation p.T335A 0.15 tolerated(0.24) benign(0.004) TCGA-CG-5721-01 3 47887884 47887884 A G DHX30 Missense_Mutation p.D441G 0.23 deleterious(0.01) possibly_damaging(0.674) TCGA-CG-5721-01 3 47889727 47889727 C T DHX30 Missense_Mutation p.R782W 0.20 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 3 47950531 47950531 C T MAP4 Intron 0.20 TCGA-CG-5721-01 3 48604159 48604159 A G COL7A1 Silent p.G2746G 0.15 TCGA-CG-5721-01 3 48630051 48630051 G T COL7A1 Missense_Mutation p.L310I 0.16 unknown(0) TCGA-CG-5721-01 3 48691211 48691211 A G CELSR3 Silent p.H1763H 0.21 TCGA-CG-5721-01 3 48696568 48696568 G T CELSR3 Missense_Mutation p.P1167H 0.19 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 3 48699915 48699915 C - CELSR3 Frame_Shift_Del p.P52Qfs*10 0.22 TCGA-CG-5721-01 3 48730461 48730461 T - IP6K2 Frame_Shift_Del p.K118Nfs*5 0.21 TCGA-CG-5721-01 3 49161917 49161917 C T LAMB2 Missense_Mutation p.A1080T 0.28 deleterious(0.03) possibly_damaging(0.79) TCGA-CG-5721-01 3 49249252 49249252 T C CCDC36 Silent p.S13S 0.14 TCGA-CG-5721-01 3 49688405 49688405 A G BSN Missense_Mutation p.T627A 0.14 unknown(0) TCGA-CG-5721-01 3 49695210 49695210 A G BSN Missense_Mutation p.S2741G 0.22 unknown(0) TCGA-CG-5721-01 3 49700635 49700635 C T BSN Missense_Mutation p.H3682Y 0.29 unknown(0) TCGA-CG-5721-01 3 49701969 49701969 G T BSN Missense_Mutation p.A3908S 0.18 possibly_damaging(0.901) TCGA-CG-5721-01 3 49936349 49936349 C T MST1R Missense_Mutation p.R500Q 0.22 tolerated(0.07) benign(0.292) TCGA-CG-5721-01 3 49940944 49940944 G - MST1R Frame_Shift_Del p.Y34Tfs*9 0.20 TCGA-CG-5721-01 3 50231251 50231251 G A GNAT1 Missense_Mutation p.R172H 0.21 tolerated(0.09) probably_damaging(1) TCGA-CG-5721-01 3 50326260 50326260 T C IFRD2 Missense_Mutation p.T396A 0.12 tolerated(0.13) benign(0.314) TCGA-CG-5721-01 3 50338063 50338063 A G HYAL1 Missense_Mutation p.F387L 0.20 deleterious(0) possibly_damaging(0.879) TCGA-CG-5721-01 3 50357862 50357862 G A HYAL2 Missense_Mutation p.A20V 0.29 deleterious(0.02) benign(0.059) TCGA-CG-5721-01 3 50416569 50416569 T C CACNA2D2 Missense_Mutation p.D405G 0.17 deleterious(0) possibly_damaging(0.846) TCGA-CG-5721-01 3 51417604 51417604 C - DOCK3 Frame_Shift_Del p.P1852Qfs*45 0.26 TCGA-CG-5721-01 3 51430017 51430017 C T RBM15B Missense_Mutation p.A396V 0.16 deleterious(0.04) possibly_damaging(0.564) TCGA-CG-5721-01 3 51991962 51991962 G A PCBP4 3'UTR 0.15 TCGA-CG-5721-01 3 52003637 52003637 G - ABHD14B Intron 0.16 TCGA-CG-5721-01 3 52256132 52256132 C T TLR9 Missense_Mutation p.A888T 0.21 tolerated(0.5) benign(0.014) TCGA-CG-5721-01 3 52257592 52257592 C T TLR9 Missense_Mutation p.R401H 0.27 deleterious(0.04) probably_damaging(0.944) TCGA-CG-5721-01 3 52258032 52258032 C T TLR9 Silent p.P254P 0.19 TCGA-CG-5721-01 3 52265209 52265209 C T TWF2 Silent p.S139S 0.14 TCGA-CG-5721-01 3 52402790 52402790 G - DNAH1 Frame_Shift_Del p.A1935Pfs*25 0.21 TCGA-CG-5721-01 3 52423490 52423490 C T DNAH1 Missense_Mutation p.T3170M 0.29 benign(0.067) TCGA-CG-5721-01 3 52439911 52439911 C T BAP1 Silent p.Q267Q 0.22 TCGA-CG-5721-01 3 52469548 52469548 G C SEMA3G 3'UTR 0.23 TCGA-CG-5721-01 3 52469661 52469661 A G SEMA3G Silent p.H769H 0.12 TCGA-CG-5721-01 3 52475363 52475363 A G SEMA3G Missense_Mutation p.Y244H 0.16 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 3 52485421 52485421 C T TNNC1 Missense_Mutation p.R147H 0.35 deleterious(0.03) benign(0.09) TCGA-CG-5721-01 3 52546401 52546401 C - STAB1 Frame_Shift_Del p.P978Lfs*57 0.24 TCGA-CG-5721-01 3 52551026 52551026 G - STAB1 Frame_Shift_Del p.G1465Afs*126 0.22 TCGA-CG-5721-01 3 52563198 52563198 T C NT5DC2 Missense_Mutation p.T129A 0.22 tolerated(0.79) benign(0.023) TCGA-CG-5721-01 3 52637747 52637747 T C PBRM1 Missense_Mutation p.T857A 0.17 deleterious(0) benign(0.319) TCGA-CG-5721-01 3 52643790 52643791 - T PBRM1 Frame_Shift_Ins p.P703Afs*20 0.18 TCGA-CG-5721-01 3 52643942 52643943 - T PBRM1 Frame_Shift_Ins p.S652Ifs*13 0.22 TCGA-CG-5721-01 3 52777458 52777458 C T NEK4 Silent p.A638A 0.17 TCGA-CG-5721-01 3 52823759 52823759 A G ITIH1 Missense_Mutation p.N737S 0.13 tolerated(0.13) benign(0.07) TCGA-CG-5721-01 3 53694220 53694220 C T CACNA1D Silent p.S228S 0.25 TCGA-CG-5721-01 3 53844236 53844236 A G CACNA1D Missense_Mutation p.T2055A 0.17 tolerated_low_confidence(0.46) benign(0.033) TCGA-CG-5721-01 3 53851805 53851805 T C CHDH Silent p.%3D 0.13 TCGA-CG-5721-01 3 53856520 53856520 T C CHDH Missense_Mutation p.R285G 0.26 tolerated(0.1) benign(0.21) TCGA-CG-5721-01 3 54661852 54661852 A G CACNA2D3 Silent p.G334G 0.21 TCGA-CG-5721-01 3 54919520 54919520 T C CACNA2D3 Missense_Mutation p.Y655H 0.10 deleterious(0) probably_damaging(0.997) TCGA-CG-5721-01 3 54959015 54959015 A G LRTM1 Silent p.L79L 0.23 TCGA-CG-5721-01 3 55513396 55513396 A G WNT5A Missense_Mutation p.W113R 0.22 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 3 56681185 56681185 A G FAM208A Missense_Mutation p.I527T 0.17 tolerated(0.11) benign(0.02) TCGA-CG-5721-01 3 57613874 57613874 G A DENND6A 3'UTR 0.19 TCGA-CG-5721-01 3 58089788 58089788 G - FLNB Frame_Shift_Del p.G531Dfs*42 0.17 TCGA-CG-5721-01 3 58110079 58110079 A G FLNB Missense_Mutation p.T1249A 0.13 tolerated(0.1) benign(0.089) TCGA-CG-5721-01 3 58260523 58260523 G A ABHD6 Missense_Mutation p.R221H 0.21 deleterious(0.05) possibly_damaging(0.873) TCGA-CG-5721-01 3 58510265 58510266 GA - ACOX2 Frame_Shift_Del p.P472Ifs*9 0.08 TCGA-CG-5721-01 3 58639425 58639425 T C FAM3D Missense_Mutation p.T33A 0.18 tolerated(0.81) benign(0.03) TCGA-CG-5721-01 3 58870331 58870331 T C C3orf67 Missense_Mutation p.T94A 0.18 tolerated(0.08) possibly_damaging(0.869) TCGA-CG-5721-01 3 61975397 61975397 G A PTPRG Missense_Mutation p.E97K 0.21 tolerated(0.88) benign(0.004) TCGA-CG-5721-01 3 62452032 62452032 T A CADPS Silent p.I1178I 0.26 TCGA-CG-5721-01 3 63824156 63824156 T C THOC7 Missense_Mutation p.M53V 0.16 deleterious(0.01) benign(0.093) TCGA-CG-5721-01 3 63898589 63898589 T C ATXN7 Silent p.P105P 0.20 TCGA-CG-5721-01 3 63976414 63976414 T C ATXN7 Missense_Mutation p.F521L 0.18 tolerated(0.06) benign(0.279) TCGA-CG-5721-01 3 64085149 64085149 G A PRICKLE2 Missense_Mutation p.R705C 0.22 deleterious(0) possibly_damaging(0.614) TCGA-CG-5721-01 3 64547309 64547309 T C ADAMTS9 Missense_Mutation p.D1548G 0.12 tolerated(0.37) benign(0.001) TCGA-CG-5721-01 3 64582593 64582593 G A ADAMTS9 Silent p.N1364N 0.16 TCGA-CG-5721-01 3 64619438 64619438 G A ADAMTS9 Silent p.D658D 0.21 TCGA-CG-5721-01 3 64636769 64636769 C T ADAMTS9 Missense_Mutation p.A463T 0.19 deleterious(0) probably_damaging(0.947) TCGA-CG-5721-01 3 65342381 65342381 C A MAGI1 Missense_Mutation p.R1354M 0.24 deleterious(0.03) unknown(0) TCGA-CG-5721-01 3 66463397 66463397 G T LRIG1 Missense_Mutation p.T230N 0.29 deleterious(0) probably_damaging(0.965) TCGA-CG-5721-01 3 68929977 68929977 A G FAM19A4 Missense_Mutation p.S12P 0.20 deleterious(0.02) benign(0.054) TCGA-CG-5721-01 3 71247404 71247404 G A FOXP1 Silent p.A43A 0.22 TCGA-CG-5721-01 3 71739244 71739244 G A EIF4E3 Missense_Mutation p.A182V 0.20 deleterious(0.04) probably_damaging(0.968) TCGA-CG-5721-01 3 72799389 72799389 A G SHQ1 3'UTR 0.19 TCGA-CG-5721-01 3 73433573 73433573 T C PDZRN3 Missense_Mutation p.Y715C 0.20 tolerated(0.41) benign(0.001) TCGA-CG-5721-01 3 77617497 77617497 G T ROBO2 Missense_Mutation p.R644M 0.17 deleterious(0.01) benign(0.35) TCGA-CG-5721-01 3 78710235 78710235 A - ROBO1 Frame_Shift_Del p.F755Lfs*28 0.22 TCGA-CG-5721-01 3 8671348 8671348 A G SSUH2 Splice_Site p.X196_splice 0.08 TCGA-CG-5721-01 3 87017791 87017791 C T VGLL3 Missense_Mutation p.G296R 0.22 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 3 87308934 87308934 A G POU1F1 3'UTR 0.25 TCGA-CG-5721-01 3 93598107 93598107 C T PROS1 Missense_Mutation p.R515H 0.18 deleterious(0.03) benign(0.365) TCGA-CG-5721-01 3 93615522 93615522 C T PROS1 Missense_Mutation p.C288Y 0.23 deleterious(0) probably_damaging(0.98) TCGA-CG-5721-01 3 93754252 93754252 T C ARL13B Missense_Mutation p.V153A 0.24 deleterious(0.03) possibly_damaging(0.888) TCGA-CG-5721-01 3 9413199 9413199 C T THUMPD3 Silent p.D262D 0.16 TCGA-CG-5721-01 3 9488951 9488951 A C SETD5 Missense_Mutation p.Q581P 0.17 tolerated(0.24) benign(0.127) TCGA-CG-5721-01 3 95373915 95373915 C T MTHFD2P1 RNA 0.40 TCGA-CG-5721-01 3 97367155 97367155 A G EPHA6 Intron 0.16 TCGA-CG-5721-01 3 97439147 97439147 G A EPHA6 Missense_Mutation p.A943T 0.13 deleterious(0.04) possibly_damaging(0.655) TCGA-CG-5721-01 3 97662280 97662280 A G CRYBG3 3'UTR 0.23 TCGA-CG-5721-01 3 9768398 9768398 T C CPNE9 Missense_Mutation p.M465T 0.20 deleterious(0) benign(0.02) TCGA-CG-5721-01 3 97711803 97711803 A G GABRR3 3'Flank 0.23 TCGA-CG-5721-01 3 9775910 9775910 G A BRPF1 Missense_Mutation p.R29Q 0.24 tolerated(0.24) probably_damaging(0.99) TCGA-CG-5721-01 3 97888382 97888382 T C OR5H15 Missense_Mutation p.V280A 0.11 deleterious(0) benign(0.395) TCGA-CG-5721-01 3 9792665 9792665 A G OGG1 Silent p.V58V 0.20 TCGA-CG-5721-01 3 98251737 98251737 G A GPR15 Missense_Mutation p.S287N 0.18 deleterious(0.01) possibly_damaging(0.82) TCGA-CG-5721-01 3 9841903 9841903 A G ARPC4 Missense_Mutation p.I72V 0.18 tolerated(0.19) benign(0.056) TCGA-CG-5721-01 3 9982597 9982597 G A CRELD1 Missense_Mutation p.R175Q 0.25 deleterious(0) possibly_damaging(0.747) TCGA-CG-5721-01 4 100052676 100052676 A G ADH4 Silent p.C274C 0.11 TCGA-CG-5721-01 4 100065391 100065391 T C ADH4 5'UTR 0.23 TCGA-CG-5721-01 4 100128683 100128683 A G ADH6 Missense_Mutation p.V295A 0.16 tolerated(0.14) benign(0.012) TCGA-CG-5721-01 4 100131424 100131424 T C ADH6 Missense_Mutation p.T128A 0.04 deleterious(0) benign(0.212) TCGA-CG-5721-01 4 100479326 100479326 T C TRMT10A Silent p.R76R 0.17 TCGA-CG-5721-01 4 100844195 100844195 A G DNAJB14 Splice_Site p.X151_splice 0.28 TCGA-CG-5721-01 4 101111136 101111136 A G DDIT4L Missense_Mutation p.V2A 0.12 deleterious_low_confidence(0.01) probably_damaging(0.987) TCGA-CG-5721-01 4 102001725 102001725 A - PPP3CA Frame_Shift_Del p.S307Qfs*6 0.18 TCGA-CG-5721-01 4 104104378 104104378 T C CENPE Silent p.K271K 0.21 TCGA-CG-5721-01 4 10445841 10445841 A G ZNF518B Silent p.S704S 0.20 TCGA-CG-5721-01 4 10446888 10446888 A G ZNF518B Silent p.G355G 0.20 TCGA-CG-5721-01 4 106156249 106156249 A G TET2 Missense_Mutation p.S384G 0.21 deleterious(0.05) benign(0.004) TCGA-CG-5721-01 4 106848587 106848587 T C NPNT Splice_Site p.X89_splice 0.21 TCGA-CG-5721-01 4 108622349 108622349 A G PAPSS1 Silent p.R51R 0.17 TCGA-CG-5721-01 4 108940769 108940769 C T HADH Nonsense_Mutation p.R165* 0.12 TCGA-CG-5721-01 4 109546411 109546411 T C RPL34 Splice_Site 0.39 TCGA-CG-5721-01 4 109675819 109675819 T G ETNPPL Missense_Mutation p.K153T 0.19 deleterious(0) probably_damaging(0.99) TCGA-CG-5721-01 4 110739135 110739135 T C GAR1 Silent p.C86C 0.15 TCGA-CG-5721-01 4 110909752 110909752 G A EGF Missense_Mutation p.C874Y 0.20 deleterious(0.02) probably_damaging(0.993) TCGA-CG-5721-01 4 110972460 110972460 A G ELOVL6 3'UTR 0.15 TCGA-CG-5721-01 4 111398135 111398135 A G ENPEP Missense_Mutation p.T189A 0.16 deleterious(0.04) benign(0.012) TCGA-CG-5721-01 4 111409702 111409702 T C ENPEP Missense_Mutation p.I217T 0.20 deleterious(0) possibly_damaging(0.816) TCGA-CG-5721-01 4 113352170 113352170 C T ALPK1 Silent p.C489C 0.20 TCGA-CG-5721-01 4 113540080 113540080 T C C4orf21 Missense_Mutation p.Q373R 0.11 tolerated(0.16) benign(0.219) TCGA-CG-5721-01 4 113568024 113568024 T C LARP7 Silent p.S162S 0.21 TCGA-CG-5721-01 4 119203203 119203203 A G PRSS12 Missense_Mutation p.V839A 0.21 tolerated(0.12) benign(0.167) TCGA-CG-5721-01 4 119216958 119216958 T A PRSS12 Missense_Mutation p.I631F 0.20 deleterious(0.01) probably_damaging(0.992) TCGA-CG-5721-01 4 1207327 1207327 G A CTBP1 Silent p.S320S 0.20 TCGA-CG-5721-01 4 121732558 121732558 A G PRDM5 Silent p.C304C 0.21 TCGA-CG-5721-01 4 121737729 121737729 A G PRDM5 Silent p.S248S 0.22 TCGA-CG-5721-01 4 123109176 123109176 G - KIAA1109 Frame_Shift_Del p.G252Efs*27 0.13 TCGA-CG-5721-01 4 123128293 123128293 T C KIAA1109 Silent p.S509S 0.22 TCGA-CG-5721-01 4 123141513 123141513 G A KIAA1109 Missense_Mutation p.C834Y 0.18 possibly_damaging(0.781) TCGA-CG-5721-01 4 123156180 123156180 T C KIAA1109 Splice_Site p.X1192_splice 0.19 TCGA-CG-5721-01 4 123161495 123161495 T C KIAA1109 Missense_Mutation p.V1553A 0.13 benign(0.101) TCGA-CG-5721-01 4 123170828 123170828 A G KIAA1109 Missense_Mutation p.T1901A 0.15 benign(0.278) TCGA-CG-5721-01 4 123175388 123175388 A T KIAA1109 Silent p.L1987L 0.28 TCGA-CG-5721-01 4 123255605 123255605 A G KIAA1109 Missense_Mutation p.D3918G 0.21 possibly_damaging(0.784) TCGA-CG-5721-01 4 123342484 123342484 A G ADAD1 Missense_Mutation p.N519S 0.17 tolerated(0.05) benign(0.057) TCGA-CG-5721-01 4 123949496 123949496 A G SPATA5 Silent p.T675T 0.19 TCGA-CG-5721-01 4 125591594 125591594 A G ANKRD50 Silent p.G946G 0.20 TCGA-CG-5721-01 4 126240723 126240723 T C FAT4 Missense_Mutation p.Y1053H 0.22 probably_damaging(0.999) TCGA-CG-5721-01 4 126328057 126328057 A G FAT4 Missense_Mutation p.Y1777C 0.20 probably_damaging(1) TCGA-CG-5721-01 4 126336235 126336235 T C FAT4 Silent p.I2039I 0.20 TCGA-CG-5721-01 4 126389698 126389698 T C FAT4 Silent p.S3977S 0.15 TCGA-CG-5721-01 4 126389840 126389840 T - FAT4 Frame_Shift_Del p.L4026Wfs*10 0.21 TCGA-CG-5721-01 4 126398439 126398439 A G FAT4 Silent p.G4141G 0.15 TCGA-CG-5721-01 4 126400953 126400953 T C FAT4 Silent p.C4177C 0.15 TCGA-CG-5721-01 4 126411790 126411790 A G FAT4 Missense_Mutation p.I4605V 0.16 benign(0.001) TCGA-CG-5721-01 4 128554306 128554306 T C INTU Silent p.G39G 0.17 TCGA-CG-5721-01 4 128627893 128627893 A G INTU Silent p.L680L 0.17 TCGA-CG-5721-01 4 128632194 128632194 A G INTU Missense_Mutation p.I832M 0.26 deleterious(0) probably_damaging(0.915) TCGA-CG-5721-01 4 128814700 128814700 A G PLK4 Missense_Mutation p.I785M 0.22 tolerated(0.07) benign(0.418) TCGA-CG-5721-01 4 129783206 129783206 T C JADE1 Silent p.P443P 0.11 TCGA-CG-5721-01 4 129878253 129878253 T C SCLT1 Silent p.E358E 0.14 TCGA-CG-5721-01 4 134071649 134071649 C - PCDH10 Frame_Shift_Del p.S121Lfs*7 0.26 TCGA-CG-5721-01 4 134073171 134073171 A G PCDH10 Missense_Mutation p.M626V 0.16 tolerated(0.39) benign(0.034) TCGA-CG-5721-01 4 13571645 13571645 G A BOD1L1 Missense_Mutation p.A3049V 0.12 benign(0.22) TCGA-CG-5721-01 4 13601895 13601895 T A BOD1L1 Missense_Mutation p.K2210M 0.24 probably_damaging(0.982) TCGA-CG-5721-01 4 13602539 13602539 T C BOD1L1 Silent p.E1995E 0.18 TCGA-CG-5721-01 4 138451686 138451686 G T PCDH18 Silent p.T519T 0.21 TCGA-CG-5721-01 4 140810714 140810714 T C MAML3 Missense_Mutation p.N626D 0.21 benign(0.195) TCGA-CG-5721-01 4 141311858 141311858 T C CLGN Missense_Mutation p.K559R 0.18 tolerated(0.24) possibly_damaging(0.451) TCGA-CG-5721-01 4 142155187 142155187 T C ZNF330 3'UTR 0.19 TCGA-CG-5721-01 4 146058524 146058524 A G OTUD4 3'UTR 0.22 TCGA-CG-5721-01 4 146059468 146059468 C T OTUD4 Missense_Mutation p.G755E 0.22 tolerated(0.22) probably_damaging(0.973) TCGA-CG-5721-01 4 146560420 146560420 G A MMAA Silent p.P43P 0.24 TCGA-CG-5721-01 4 147442959 147442959 T A SLC10A7 5'UTR 0.20 TCGA-CG-5721-01 4 147561397 147561397 G T POU4F2 Missense_Mutation p.A223S 0.27 tolerated(0.3) probably_damaging(0.935) TCGA-CG-5721-01 4 148538945 148538945 A G TMEM184C 5'UTR 0.31 TCGA-CG-5721-01 4 148993227 148993227 C T ARHGAP10 Silent p.L786L 0.19 TCGA-CG-5721-01 4 149002532 149002532 G A NR3C2 Missense_Mutation p.S973L 0.26 deleterious(0) benign(0.233) TCGA-CG-5721-01 4 149357029 149357029 A G NR3C2 Silent p.S328S 0.20 TCGA-CG-5721-01 4 151236759 151236759 T C LRBA Silent p.V2560V 0.16 TCGA-CG-5721-01 4 151356858 151356858 T C LRBA Silent p.E2319E 0.17 TCGA-CG-5721-01 4 151504269 151504269 A G MAB21L2 Missense_Mutation p.T30A 0.11 tolerated(0.79) benign(0.001) TCGA-CG-5721-01 4 151604819 151604819 A G LRBA Silent p.C1935C 0.19 TCGA-CG-5721-01 4 151788975 151788975 A - LRBA Frame_Shift_Del p.S872Lfs*15 0.20 TCGA-CG-5721-01 4 152023208 152023211 GAAT - RPS3A Intron 0.25 TCGA-CG-5721-01 4 153247360 153247360 G A FBXW7 Missense_Mutation p.A481V 0.18 deleterious(0.01) possibly_damaging(0.788) TCGA-CG-5721-01 4 153273753 153273753 A G FBXW7 Intron 0.11 TCGA-CG-5721-01 4 154636790 154636790 T C RNF175 Missense_Mutation p.T219A 0.09 tolerated(0.11) benign(0.15) TCGA-CG-5721-01 4 15511838 15511838 C T CC2D2A Missense_Mutation p.A172V 0.13 tolerated_low_confidence(1) benign(0.005) TCGA-CG-5721-01 4 155468901 155468901 G A PLRG1 Missense_Mutation p.T74M 0.16 tolerated(0.1) benign(0.051) TCGA-CG-5721-01 4 156135287 156135287 A T NPY2R Missense_Mutation p.I66F 0.20 tolerated(0.4) benign(0.004) TCGA-CG-5721-01 4 156721148 156721148 C T GUCY1B3 Missense_Mutation p.T366I 0.24 deleterious(0) possibly_damaging(0.643) TCGA-CG-5721-01 4 157684178 157684178 T C PDGFC 3'UTR 0.19 TCGA-CG-5721-01 4 157693895 157693895 A G PDGFC Missense_Mutation p.Y216H 0.14 deleterious(0.04) probably_damaging(0.995) TCGA-CG-5721-01 4 15780029 15780029 T C CD38 5'UTR 0.19 TCGA-CG-5721-01 4 15780076 15780076 A G CD38 Silent p.K13K 0.14 TCGA-CG-5721-01 4 159091420 159091420 T A FAM198B Missense_Mutation p.K330N 0.14 tolerated(1) unknown(0) TCGA-CG-5721-01 4 159559213 159559213 T C RXFP1 Missense_Mutation p.L342P 0.27 deleterious(0.01) benign(0.413) TCGA-CG-5721-01 4 159569818 159569818 A T RXFP1 Missense_Mutation p.I642L 0.23 tolerated(0.11) benign(0.052) TCGA-CG-5721-01 4 159780291 159780291 A G FNIP2 Missense_Mutation p.S314G 0.24 tolerated(0.78) benign(0.204) TCGA-CG-5721-01 4 16215413 16215413 C T TAPT1 Missense_Mutation p.R103Q 0.17 deleterious(0.02) probably_damaging(0.923) TCGA-CG-5721-01 4 162376252 162376252 G T FSTL5 Missense_Mutation p.P582H 0.08 tolerated(0.08) benign(0.387) TCGA-CG-5721-01 4 162459394 162459394 A G FSTL5 Silent p.T412T 0.18 TCGA-CG-5721-01 4 162463689 162463689 A G FSTL5 Missense_Mutation p.L391P 0.17 deleterious(0.03) probably_damaging(0.996) TCGA-CG-5721-01 4 162697185 162697185 T C FSTL5 Missense_Mutation p.M151V 0.16 tolerated(0.55) benign(0.001) TCGA-CG-5721-01 4 164049954 164049954 T C NAF1 3'UTR 0.18 TCGA-CG-5721-01 4 164393014 164393014 T G TKTL2 Missense_Mutation p.M625L 0.14 tolerated(0.22) benign(0.002) TCGA-CG-5721-01 4 164394169 164394169 T C TKTL2 Missense_Mutation p.T240A 0.21 deleterious(0.05) possibly_damaging(0.483) TCGA-CG-5721-01 4 164415857 164415857 T C TMA16 5'UTR 0.19 TCGA-CG-5721-01 4 166160048 166160048 A G KLHL2 Silent p.V130V 0.10 TCGA-CG-5721-01 4 166254547 166254547 A G MSMO1 Missense_Mutation p.I9V 0.17 tolerated(0.22) benign(0.004) TCGA-CG-5721-01 4 169146804 169146804 C A DDX60 Missense_Mutation p.E1519D 0.23 tolerated(0.11) benign(0.039) TCGA-CG-5721-01 4 169325220 169325220 A G DDX60L Missense_Mutation p.L1084S 0.27 tolerated(0.37) benign(0.001) TCGA-CG-5721-01 4 169845505 169845505 T C PALLD Missense_Mutation p.V1053A 0.14 tolerated(0.46) benign(0.042) TCGA-CG-5721-01 4 1701386 1701386 A G SLBP Silent p.F128F 0.16 TCGA-CG-5721-01 4 170498105 170498105 T C NEK1 Missense_Mutation p.K332E 0.25 deleterious(0) possibly_damaging(0.69) TCGA-CG-5721-01 4 170618838 170618838 G A CLCN3 Missense_Mutation p.A506T 0.12 tolerated(0.08) probably_damaging(0.994) TCGA-CG-5721-01 4 170913013 170913013 T C MFAP3L Missense_Mutation p.N249S 0.19 deleterious(0.04) probably_damaging(0.998) TCGA-CG-5721-01 4 170983111 170983111 C T AADAT Missense_Mutation p.D390N 0.23 tolerated(0.23) benign(0.006) TCGA-CG-5721-01 4 173232782 173232782 A G GALNTL6 Missense_Mutation p.K89E 0.19 tolerated(0.18) benign(0.144) TCGA-CG-5721-01 4 173873306 173873306 A C GALNTL6 Missense_Mutation p.K423T 0.13 tolerated(0.2) benign(0.005) TCGA-CG-5721-01 4 174219377 174219377 T C GALNT7 Silent p.S359S 0.21 TCGA-CG-5721-01 4 174242833 174242834 - A GALNT7 Frame_Shift_Ins p.W649Mfs*5 0.21 TCGA-CG-5721-01 4 175897485 175897485 G A ADAM29 Missense_Mutation p.C270Y 0.23 deleterious(0) probably_damaging(0.985) TCGA-CG-5721-01 4 178881970 178881970 T C LINC01098 5'UTR 0.25 TCGA-CG-5721-01 4 183603166 183603166 C T TENM3 Silent p.N678N 0.27 TCGA-CG-5721-01 4 183664498 183664498 T A TENM3 Missense_Mutation p.S1185R 0.23 deleterious(0) benign(0.003) TCGA-CG-5721-01 4 183675540 183675540 A G TENM3 Silent p.V1340V 0.21 TCGA-CG-5721-01 4 183710405 183710405 A G TENM3 Missense_Mutation p.T1822A 0.28 deleterious(0.02) possibly_damaging(0.636) TCGA-CG-5721-01 4 185593425 185593425 T C PRIMPOL Missense_Mutation p.F219L 0.20 benign(0.023) TCGA-CG-5721-01 4 185940960 185940960 A G HELT Silent p.A149A 0.27 TCGA-CG-5721-01 4 186168475 186168475 T C SNX25 5'UTR 0.16 TCGA-CG-5721-01 4 186274723 186274723 A G SNX25 Missense_Mutation p.M687V 0.19 tolerated(0.1) benign(0.065) TCGA-CG-5721-01 4 186435463 186435463 T C PDLIM3 Missense_Mutation p.N120S 0.13 tolerated(0.12) possibly_damaging(0.898) TCGA-CG-5721-01 4 186533064 186533064 C A SORBS2 Missense_Mutation p.R1085I 0.11 deleterious(0) probably_damaging(0.917) TCGA-CG-5721-01 4 186544622 186544622 T C SORBS2 Missense_Mutation p.H750R 0.28 deleterious(0.01) probably_damaging(0.995) TCGA-CG-5721-01 4 187000110 187000110 A G TLR3 Silent p.L186L 0.23 TCGA-CG-5721-01 4 187005313 187005313 C T TLR3 Missense_Mutation p.P825S 0.17 tolerated(0.06) possibly_damaging(0.802) TCGA-CG-5721-01 4 187549306 187549306 A G FAT1 Splice_Site p.X1604_splice 0.15 TCGA-CG-5721-01 4 187630605 187630605 T - FAT1 Frame_Shift_Del p.N126Ifs*20 0.21 TCGA-CG-5721-01 4 1978235 1978235 A - WHSC1 Frame_Shift_Del p.K1220Rfs*109 0.34 TCGA-CG-5721-01 4 2233811 2233811 T A HAUS3 Missense_Mutation p.D552V 0.11 deleterious(0) probably_damaging(0.987) TCGA-CG-5721-01 4 22425958 22425958 A G GPR125 Silent p.V487V 0.17 TCGA-CG-5721-01 4 22449096 22449096 C A GPR125 Missense_Mutation p.G171V 0.20 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 4 22750561 22750561 A G GBA3 Silent p.Q395Q 0.41 TCGA-CG-5721-01 4 24875302 24875302 C T CCDC149 Splice_Site p.X88_splice 0.23 TCGA-CG-5721-01 4 25671295 25671295 A T SLC34A2 Missense_Mutation p.D221V 0.17 deleterious(0) probably_damaging(0.996) TCGA-CG-5721-01 4 25677873 25677873 T A SLC34A2 Nonsense_Mutation p.Y525* 0.22 TCGA-CG-5721-01 4 25806334 25806334 C T SEL1L3 Silent p.G535G 0.11 TCGA-CG-5721-01 4 2986251 2986251 A - GRK4 Frame_Shift_Del p.S24Vfs*11 0.22 TCGA-CG-5721-01 4 30725028 30725028 A G PCDH7 Missense_Mutation p.T662A 0.18 deleterious(0) benign(0.159) TCGA-CG-5721-01 4 30732441 30732441 A G PCDH7 Intron 0.20 TCGA-CG-5721-01 4 3109036 3109036 G A HTT Silent p.P211P 0.19 TCGA-CG-5721-01 4 3133117 3133117 A - HTT Frame_Shift_Del p.N699Mfs*9 0.17 TCGA-CG-5721-01 4 3190708 3190708 A C HTT Missense_Mutation p.L1752F 0.22 probably_damaging(0.979) TCGA-CG-5721-01 4 3219639 3219639 G A HTT Missense_Mutation p.R2401H 0.22 probably_damaging(0.999) TCGA-CG-5721-01 4 3319065 3319065 T C RGS12 Missense_Mutation p.Y390H 0.24 deleterious(0) probably_damaging(0.921) TCGA-CG-5721-01 4 38023271 38023271 A G TBC1D1 Missense_Mutation p.K381R 0.14 tolerated(0.25) benign(0.02) TCGA-CG-5721-01 4 39409016 39409016 T C KLB Silent p.Y149Y 0.16 TCGA-CG-5721-01 4 39779998 39779998 T G UBE2K Missense_Mutation p.L183V 0.21 deleterious(0) probably_damaging(0.965) TCGA-CG-5721-01 4 39899999 39899999 A G PDS5A Intron 0.21 TCGA-CG-5721-01 4 40122482 40122482 A G N4BP2 Silent p.K917K 0.21 TCGA-CG-5721-01 4 40356386 40356386 A G CHRNA9 Missense_Mutation p.Y430C 0.20 deleterious(0.03) probably_damaging(0.992) TCGA-CG-5721-01 4 420498 420498 A G ABCA11P RNA 0.24 TCGA-CG-5721-01 4 42119623 42119623 T C BEND4 Missense_Mutation p.N506S 0.26 tolerated_low_confidence(0.69) benign(0.026) TCGA-CG-5721-01 4 4228315 4228315 G A OTOP1 Silent p.L93L 0.21 TCGA-CG-5721-01 4 42895333 42895333 G T GRXCR1 Missense_Mutation p.R17L 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-CG-5721-01 4 436007 436007 T A ZNF721 Missense_Mutation p.D750V 0.19 deleterious(0.01) benign(0.065) TCGA-CG-5721-01 4 44638028 44638028 C T YIPF7 Missense_Mutation p.G88E 0.15 deleterious(0) probably_damaging(0.985) TCGA-CG-5721-01 4 48036924 48036924 A G NIPAL1 Missense_Mutation p.N163S 0.13 tolerated(0.08) possibly_damaging(0.699) TCGA-CG-5721-01 4 48173385 48173385 C A TEC Nonsense_Mutation p.E109* 0.09 TCGA-CG-5721-01 4 48530056 48530056 T C FRYL Missense_Mutation p.T2358A 0.17 deleterious(0.01) probably_damaging(0.983) TCGA-CG-5721-01 4 48563635 48563635 A G FRYL Missense_Mutation p.F1239L 0.15 deleterious(0.04) probably_damaging(0.914) TCGA-CG-5721-01 4 48990684 48990684 T C CWH43 Silent p.I78I 0.17 TCGA-CG-5721-01 4 49046852 49046852 G A CWH43 Missense_Mutation p.R618Q 0.24 deleterious(0) possibly_damaging(0.905) TCGA-CG-5721-01 4 53468063 53468063 G A USP46 Missense_Mutation p.R294C 0.17 deleterious(0.03) benign(0.056) TCGA-CG-5721-01 4 54231560 54231560 A G SCFD2 Silent p.D183D 0.24 TCGA-CG-5721-01 4 54245411 54245411 G A FIP1L1 Silent p.R50R 0.17 TCGA-CG-5721-01 4 54325743 54325743 T - FIP1L1 3'UTR 0.26 TCGA-CG-5721-01 4 5461855 5461855 G A STK32B Missense_Mutation p.R270H 0.24 deleterious(0) probably_damaging(0.976) TCGA-CG-5721-01 4 55161570 55161570 G A PDGFRA 3'UTR 0.19 TCGA-CG-5721-01 4 5578085 5578085 C T EVC2 Missense_Mutation p.A1052T 0.15 tolerated(0.13) benign(0.282) TCGA-CG-5721-01 4 56236243 56236243 A G SRD5A3 Silent p.L314L 0.19 TCGA-CG-5721-01 4 56763012 56763012 C T EXOC1 Missense_Mutation p.R695C 0.22 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 4 56841097 56841097 G A CEP135 Missense_Mutation p.A479T 0.23 tolerated(0.42) benign(0.006) TCGA-CG-5721-01 4 57220334 57220334 T C AASDH Silent p.V418V 0.17 TCGA-CG-5721-01 4 5731079 5731079 A G EVC Missense_Mutation p.K116E 0.19 deleterious(0) probably_damaging(0.997) TCGA-CG-5721-01 4 57325733 57325733 A - PAICS 3'UTR 0.16 TCGA-CG-5721-01 4 57777024 57777024 G A REST Missense_Mutation p.A74T 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-CG-5721-01 4 57777250 57777250 A G REST Missense_Mutation p.D149G 0.15 deleterious(0.02) probably_damaging(0.997) TCGA-CG-5721-01 4 5806486 5806486 A - EVC Frame_Shift_Del p.K828Sfs*100 0.19 TCGA-CG-5721-01 4 5857879 5857879 G A CRMP1 Nonsense_Mutation p.Q271* 0.22 TCGA-CG-5721-01 4 62758502 62758502 A G LPHN3 Missense_Mutation p.T469A 0.15 tolerated(0.67) benign(0.001) TCGA-CG-5721-01 4 6610923 6610923 A G MAN2B2 Missense_Mutation p.Y635C 0.21 deleterious(0.02) possibly_damaging(0.698) TCGA-CG-5721-01 4 66197715 66197715 T G EPHA5 Missense_Mutation p.D995A 0.08 deleterious(0.02) benign(0.266) TCGA-CG-5721-01 4 671812 671812 A G MYL5 5'UTR 0.26 TCGA-CG-5721-01 4 69202829 69202829 G A YTHDC1 Nonsense_Mutation p.R267* 0.23 TCGA-CG-5721-01 4 69343161 69343161 G A TMPRSS11E Missense_Mutation p.R261Q 0.22 tolerated(0.58) benign(0.015) TCGA-CG-5721-01 4 69682128 69682128 T C UGT2B10 Missense_Mutation p.S131P 0.17 tolerated(0.17) possibly_damaging(0.555) TCGA-CG-5721-01 4 69696589 69696589 A G UGT2B10 Missense_Mutation p.R527G 0.19 deleterious(0.03) benign(0.097) TCGA-CG-5721-01 4 69817054 69817054 T C UGT2A3 Missense_Mutation p.N142S 0.23 tolerated(0.07) benign(0.14) TCGA-CG-5721-01 4 7043037 7043037 C T CCDC96 Silent p.R543R 0.29 TCGA-CG-5721-01 4 7062879 7062879 T C GRPEL1 Missense_Mutation p.T122A 0.17 tolerated(0.12) benign(0.271) TCGA-CG-5721-01 4 71201539 71201539 T C CABS1 Silent p.D261D 0.21 TCGA-CG-5721-01 4 71346984 71346984 A G MUC7 Missense_Mutation p.T175A 0.12 tolerated(0.15) unknown(0) TCGA-CG-5721-01 4 71347722 71347722 A G MUC7 3'UTR 0.09 TCGA-CG-5721-01 4 71495195 71495195 T C ENAM 5'UTR 0.20 TCGA-CG-5721-01 4 72338848 72338848 G T SLC4A4 Intron 0.23 TCGA-CG-5721-01 4 73148714 73148714 G A ADAMTS3 3'UTR 0.27 TCGA-CG-5721-01 4 73205379 73205379 A G ADAMTS3 Silent p.G231G 0.18 TCGA-CG-5721-01 4 73981536 73981536 A G ANKRD17 Splice_Site p.X1428_splice 0.14 TCGA-CG-5721-01 4 74008406 74008406 A G ANKRD17 Missense_Mutation p.V679A 0.18 probably_damaging(0.999) TCGA-CG-5721-01 4 74279175 74279175 G A ALB Silent p.S294S 0.21 TCGA-CG-5721-01 4 76551133 76551133 T C CDKL2 Missense_Mutation p.S14G 0.24 deleterious(0) probably_damaging(0.963) TCGA-CG-5721-01 4 76570767 76570767 T C G3BP2 Silent p.R432R 0.15 TCGA-CG-5721-01 4 77661944 77661944 A G SHROOM3 Missense_Mutation p.D873G 0.11 tolerated(0.41) benign(0) TCGA-CG-5721-01 4 77817393 77817393 G A SOWAHB Missense_Mutation p.T537M 0.23 deleterious(0.05) possibly_damaging(0.791) TCGA-CG-5721-01 4 7795427 7795427 T C AFAP1 Missense_Mutation p.T465A 0.17 tolerated(1) benign(0.004) TCGA-CG-5721-01 4 78804445 78804445 A - MRPL1 Frame_Shift_Del p.D67Mfs*3 0.18 TCGA-CG-5721-01 4 79205664 79205664 G A FRAS1 Missense_Mutation p.C454Y 0.21 probably_damaging(0.999) TCGA-CG-5721-01 4 80246583 80246583 T A NAA11 Missense_Mutation p.D150V 0.23 deleterious(0.04) benign(0.091) TCGA-CG-5721-01 4 80327634 80327634 C T GK2 3'UTR 0.17 TCGA-CG-5721-01 4 8229571 8229571 A G SH3TC1 Missense_Mutation p.Y717C 0.29 deleterious(0.03) possibly_damaging(0.609) TCGA-CG-5721-01 4 82348854 82348854 A G RASGEF1B 3'UTR 0.29 TCGA-CG-5721-01 4 83765642 83765642 C T SEC31A Silent p.P841P 0.17 TCGA-CG-5721-01 4 84350768 84350768 T - HELQ Frame_Shift_Del p.G810Dfs*33 0.21 TCGA-CG-5721-01 4 85553014 85553014 G A CDS1 Missense_Mutation p.R208H 0.17 deleterious(0.02) probably_damaging(0.93) TCGA-CG-5721-01 4 85569713 85569713 C T CDS1 Silent p.G420G 0.18 TCGA-CG-5721-01 4 85660161 85660161 A G WDFY3 Splice_Site p.X2192_splice 0.13 TCGA-CG-5721-01 4 85672710 85672710 G A WDFY3 Missense_Mutation p.R1967W 0.20 deleterious(0) probably_damaging(0.996) TCGA-CG-5721-01 4 85694043 85694043 C T WDFY3 Silent p.A1598A 0.17 TCGA-CG-5721-01 4 85731422 85731422 T C WDFY3 Missense_Mutation p.T655A 0.17 tolerated(0.19) benign(0.416) TCGA-CG-5721-01 4 86073 86073 A G Z95704.2 RNA 0.26 TCGA-CG-5721-01 4 86989018 86989018 A G MAPK10 Missense_Mutation p.V298A 0.23 deleterious(0) possibly_damaging(0.76) TCGA-CG-5721-01 4 870373 870373 T A GAK Missense_Mutation p.I667F 0.21 tolerated(0.08) benign(0.144) TCGA-CG-5721-01 4 87638237 87638237 A G PTPN13 Missense_Mutation p.E451G 0.19 tolerated(0.21) benign(0.137) TCGA-CG-5721-01 4 87672210 87672210 T C PTPN13 Silent p.S1033S 0.20 TCGA-CG-5721-01 4 87679930 87679930 T C PTPN13 Missense_Mutation p.L1138S 0.14 deleterious(0) probably_damaging(0.961) TCGA-CG-5721-01 4 88099686 88099686 A G KLHL8 Missense_Mutation p.F347L 0.14 tolerated(0.46) possibly_damaging(0.779) TCGA-CG-5721-01 4 88414912 88414912 T C SPARCL1 Missense_Mutation p.D347G 0.20 tolerated(0.14) possibly_damaging(0.539) TCGA-CG-5721-01 4 88766707 88766708 - A MEPE Frame_Shift_Ins p.I232Nfs*4 0.12 TCGA-CG-5721-01 4 89198180 89198180 A G PPM1K Intron 0.25 TCGA-CG-5721-01 4 89349778 89349778 A - HERC6 Frame_Shift_Del p.K663Rfs*27 0.17 TCGA-CG-5721-01 4 89425424 89425424 A G HERC5 Missense_Mutation p.D875G 0.17 deleterious(0) benign(0.154) TCGA-CG-5721-01 4 89585357 89585357 A - HERC3 Frame_Shift_Del p.I445Lfs*16 0.23 TCGA-CG-5721-01 4 89608434 89608434 G A HERC3 Missense_Mutation p.V881M 0.19 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 4 90169014 90169014 G A GPRIN3 Missense_Mutation p.H750Y 0.16 deleterious(0) possibly_damaging(0.844) TCGA-CG-5721-01 4 90171194 90171194 T C GPRIN3 Missense_Mutation p.D23G 0.20 deleterious(0) benign(0.017) TCGA-CG-5721-01 4 90816310 90816310 C T MMRN1 Missense_Mutation p.A63V 0.23 tolerated_low_confidence(0.35) benign(0.004) TCGA-CG-5721-01 4 90849013 90849013 G A MMRN1 Silent p.K341K 0.13 TCGA-CG-5721-01 4 91230144 91230144 C T CCSER1 Missense_Mutation p.R237W 0.23 tolerated(0.19) benign(0.006) TCGA-CG-5721-01 4 94436447 94436447 T C GRID2 Missense_Mutation p.M693T 0.19 tolerated(0.63) benign(0) TCGA-CG-5721-01 4 94436498 94436498 G A GRID2 Missense_Mutation p.R710Q 0.10 tolerated(0.1) benign(0.281) TCGA-CG-5721-01 4 94750593 94750593 G A ATOH1 Missense_Mutation p.M172I 0.22 deleterious(0) probably_damaging(0.954) TCGA-CG-5721-01 4 95220654 95220654 G A HPGDS Nonsense_Mutation p.R193* 0.21 TCGA-CG-5721-01 4 95220656 95220656 T C HPGDS Missense_Mutation p.K192R 0.29 tolerated(0.1) benign(0.005) TCGA-CG-5721-01 4 95506156 95506156 T C PDLIM5 Splice_Site p.X134_splice 0.19 TCGA-CG-5721-01 4 95561578 95561578 C T PDLIM5 Silent p.C449C 0.18 TCGA-CG-5721-01 4 9836555 9836555 C T SLC2A9 Missense_Mutation p.V457I 0.16 tolerated(0.06) benign(0.16) TCGA-CG-5721-01 4 99393626 99393626 C T TSPAN5 3'UTR 0.24 TCGA-CG-5721-01 5 102494895 102494895 A G PPIP5K2 Missense_Mutation p.M595V 0.13 deleterious(0) possibly_damaging(0.748) TCGA-CG-5721-01 5 10280444 10280444 A G CMBL 3'UTR 0.24 TCGA-CG-5721-01 5 1037966 1037966 G A NKD2 Silent p.S278S 0.27 TCGA-CG-5721-01 5 1074698 1074698 G - SLC12A7 Frame_Shift_Del p.H686Tfs*11 0.24 TCGA-CG-5721-01 5 108219101 108219101 A - FER Frame_Shift_Del p.T311Rfs*2 0.17 TCGA-CG-5721-01 5 109117120 109117120 T - MAN2A1 Frame_Shift_Del p.F468Lfs*22 0.17 TCGA-CG-5721-01 5 109181585 109181585 T C MAN2A1 Missense_Mutation p.L907P 0.22 deleterious(0.01) possibly_damaging(0.903) TCGA-CG-5721-01 5 110096994 110096994 C T SLC25A46 Nonsense_Mutation p.R257* 0.18 TCGA-CG-5721-01 5 110097241 110097241 A G SLC25A46 Missense_Mutation p.H339R 0.18 deleterious(0) probably_damaging(0.984) TCGA-CG-5721-01 5 11023012 11023012 C T CTNND2 Silent p.S956S 0.22 TCGA-CG-5721-01 5 110445992 110445992 C T WDR36 Silent p.G533G 0.21 TCGA-CG-5721-01 5 110462497 110462497 G T WDR36 Missense_Mutation p.Q924H 0.16 tolerated(0.16) benign(0.048) TCGA-CG-5721-01 5 110836670 110836670 A - STARD4 Intron 0.22 TCGA-CG-5721-01 5 11199700 11199700 G A CTNND2 Missense_Mutation p.A612V 0.20 deleterious(0) probably_damaging(0.954) TCGA-CG-5721-01 5 112102935 112102935 A G APC Silent p.K90K 0.15 TCGA-CG-5721-01 5 112176628 112176628 A G APC Missense_Mutation p.I1779M 0.24 benign(0) TCGA-CG-5721-01 5 112222733 112222733 C T REEP5 Missense_Mutation p.A167T 0.15 deleterious(0.05) benign(0.05) TCGA-CG-5721-01 5 112915375 112915375 T C YTHDC2 Missense_Mutation p.F1113L 0.23 tolerated(0.33) benign(0.014) TCGA-CG-5721-01 5 114469592 114469592 C T TRIM36 Missense_Mutation p.S500N 0.14 deleterious(0) probably_damaging(0.993) TCGA-CG-5721-01 5 114572137 114572137 A G PGGT1B Missense_Mutation p.W188R 0.19 deleterious(0.03) benign(0.317) TCGA-CG-5721-01 5 114916287 114916287 T C TMED7-TICAM2 Missense_Mutation p.K392E 0.12 tolerated_low_confidence(0.07) benign(0.007) TCGA-CG-5721-01 5 114916505 114916505 T C TMED7-TICAM2 Missense_Mutation p.N319S 0.23 tolerated_low_confidence(0.44) benign(0.065) TCGA-CG-5721-01 5 115338562 115338562 A - AQPEP Frame_Shift_Del p.N619Mfs*7 0.18 TCGA-CG-5721-01 5 115813736 115813736 C T SEMA6A Silent p.R514R 0.19 TCGA-CG-5721-01 5 118485923 118485923 G A DMXL1 Silent p.K1467K 0.22 TCGA-CG-5721-01 5 1221330 1221330 C T SLC6A19 Missense_Mutation p.R535C 0.22 deleterious(0.04) probably_damaging(0.997) TCGA-CG-5721-01 5 122717893 122717893 A G CEP120 Missense_Mutation p.L672P 0.20 deleterious(0) probably_damaging(0.996) TCGA-CG-5721-01 5 122726848 122726848 C T CEP120 Missense_Mutation p.V332M 0.17 deleterious(0) probably_damaging(0.988) TCGA-CG-5721-01 5 122911547 122911547 T C CSNK1G3 Missense_Mutation p.L188S 0.25 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 5 126156662 126156662 T C LMNB1 Silent p.R407R 0.24 TCGA-CG-5721-01 5 127599336 127599336 C T FBN2 Missense_Mutation p.C2658Y 0.15 deleterious(0) possibly_damaging(0.808) TCGA-CG-5721-01 5 128861990 128861990 T A ADAMTS19 Silent p.P303P 0.11 TCGA-CG-5721-01 5 129015545 129015545 T G ADAMTS19 Missense_Mutation p.H859Q 0.19 tolerated(0.14) benign(0.034) TCGA-CG-5721-01 5 130928073 130928073 T A RAPGEF6 Intron 0.16 TCGA-CG-5721-01 5 131606779 131606779 C - PDLIM4 Frame_Shift_Del p.S169Afs*50 0.23 TCGA-CG-5721-01 5 131822004 131822005 CA - IRF1 Frame_Shift_Del p.V202Afs*6 0.16 TCGA-CG-5721-01 5 131953957 131953957 T G RAD50 Missense_Mutation p.D1120E 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-CG-5721-01 5 132070038 132070038 T C KIF3A Missense_Mutation p.T47A 0.20 tolerated(0.2) benign(0.005) TCGA-CG-5721-01 5 132158969 132158969 C T SHROOM1 Silent p.A733A 0.22 TCGA-CG-5721-01 5 132220768 132220768 C A AFF4 Missense_Mutation p.S1048I 0.13 deleterious(0.01) benign(0.131) TCGA-CG-5721-01 5 132424147 132424147 G A HSPA4 Missense_Mutation p.R346Q 0.24 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 5 132428415 132428415 A G HSPA4 Silent p.E528E 0.17 TCGA-CG-5721-01 5 132535212 132535212 C T FSTL4 Missense_Mutation p.V702I 0.15 tolerated(0.12) benign(0.071) TCGA-CG-5721-01 5 1331946 1331946 T C CLPTM1L Missense_Mutation p.K315R 0.18 tolerated(0.33) benign(0.139) TCGA-CG-5721-01 5 133473800 133473800 A G TCF7 Silent p.E164E 0.16 TCGA-CG-5721-01 5 133536726 133536726 T C PPP2CA Missense_Mutation p.T176A 0.21 deleterious(0.04) benign(0.018) TCGA-CG-5721-01 5 133561534 133561534 T C PPP2CA Missense_Mutation p.T7A 0.15 tolerated_low_confidence(0.23) benign(0) TCGA-CG-5721-01 5 133997278 133997278 T C SEC24A Splice_Site p.X189_splice 0.22 TCGA-CG-5721-01 5 134044487 134044487 G A SEC24A Missense_Mutation p.R879H 0.18 tolerated(0.06) benign(0.005) TCGA-CG-5721-01 5 134109545 134109545 G A DDX46 Missense_Mutation p.D203N 0.17 tolerated(0.11) probably_damaging(0.985) TCGA-CG-5721-01 5 137056206 137056206 C T KLHL3 Missense_Mutation p.V28I 0.19 tolerated(0.41) benign(0.001) TCGA-CG-5721-01 5 13721260 13721260 G A DNAH5 Missense_Mutation p.T4043M 0.21 probably_damaging(0.938) TCGA-CG-5721-01 5 137271556 137271556 T A PKD2L2 Missense_Mutation p.I581N 0.16 deleterious(0.02) benign(0.299) TCGA-CG-5721-01 5 137454576 137454576 A C NME5 Missense_Mutation p.N162K 0.17 tolerated(0.89) benign(0.232) TCGA-CG-5721-01 5 137533902 137533902 G A CDC23 Missense_Mutation p.T333M 0.21 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 5 13753633 13753633 A - DNAH5 Frame_Shift_Del p.L3528Yfs*16 0.18 TCGA-CG-5721-01 5 137727078 137727078 G T KDM3B Missense_Mutation p.G586V 0.23 deleterious_low_confidence(0.03) benign(0.176) TCGA-CG-5721-01 5 138269585 138269585 A G CTNNA1 Missense_Mutation p.Y843C 0.14 deleterious(0.02) probably_damaging(0.976) TCGA-CG-5721-01 5 138714371 138714371 C T SLC23A1 Missense_Mutation p.G363D 0.27 deleterious(0) probably_damaging(0.988) TCGA-CG-5721-01 5 139193808 139193808 C T PSD2 Missense_Mutation p.S292L 0.14 tolerated(0.15) benign(0.329) TCGA-CG-5721-01 5 139884751 139884751 T C ANKHD1 Silent p.G1065G 0.14 TCGA-CG-5721-01 5 139947472 139947472 G A SLC35A4 Missense_Mutation p.G240S 0.21 tolerated(0.86) probably_damaging(0.999) TCGA-CG-5721-01 5 140021440 140021440 T C TMCO6 Intron 0.12 TCGA-CG-5721-01 5 140057538 140057538 C - HARS Frame_Shift_Del p.M195Ifs*5 0.18 TCGA-CG-5721-01 5 140188651 140188651 T C PCDHA4 Missense_Mutation p.Y627H 0.16 deleterious_low_confidence(0.03) benign(0.16) TCGA-CG-5721-01 5 140203141 140203141 G A PCDHA5 Missense_Mutation p.R594H 0.25 tolerated_low_confidence(0.07) benign(0.276) TCGA-CG-5721-01 5 140203465 140203465 C T PCDHA5 Missense_Mutation p.A702V 0.12 deleterious_low_confidence(0) probably_damaging(0.964) TCGA-CG-5721-01 5 140214272 140214272 T C PCDHA7 Missense_Mutation p.C102R 0.08 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CG-5721-01 5 140214480 140214480 G A PCDHA7 Missense_Mutation p.R171K 0.16 tolerated_low_confidence(0.49) benign(0.002) TCGA-CG-5721-01 5 140228384 140228384 T C PCDHA9 Missense_Mutation p.C102R 0.11 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CG-5721-01 5 140229555 140229555 A G PCDHA9 Missense_Mutation p.Y492C 0.17 deleterious_low_confidence(0) possibly_damaging(0.464) TCGA-CG-5721-01 5 140229744 140229744 T C PCDHA9 Missense_Mutation p.V555A 0.17 deleterious_low_confidence(0.01) probably_damaging(0.993) TCGA-CG-5721-01 5 140230117 140230117 G A PCDHA9 Silent p.S679S 0.15 TCGA-CG-5721-01 5 140236179 140236179 A T PCDHA10 Silent p.I182I 0.04 TCGA-CG-5721-01 5 140249416 140249416 A T PCDHA11 Missense_Mutation p.D243V 0.16 deleterious_low_confidence(0.01) benign(0.142) TCGA-CG-5721-01 5 140250295 140250295 C T PCDHA11 Missense_Mutation p.A536V 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.88) TCGA-CG-5721-01 5 140263420 140263420 T C PCDHA13 Silent p.L523L 0.15 TCGA-CG-5721-01 5 140263984 140263984 T C PCDHA13 Silent p.L711L 0.17 TCGA-CG-5721-01 5 140306707 140306707 T C PCDHAC1 Missense_Mutation p.V77A 0.11 deleterious(0) probably_damaging(0.998) TCGA-CG-5721-01 5 140516540 140516540 C T PCDHB5 Silent p.D508D 0.15 TCGA-CG-5721-01 5 140537755 140537755 A G PCDHB17 3'UTR 0.22 TCGA-CG-5721-01 5 140554005 140554005 G A PCDHB7 Missense_Mutation p.R530H 0.33 tolerated_low_confidence(0.26) benign(0.029) TCGA-CG-5721-01 5 140562720 140562720 T C PCDHB16 Silent p.L196L 0.14 TCGA-CG-5721-01 5 140564077 140564077 G C PCDHB16 Missense_Mutation p.G648A 0.24 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-CG-5721-01 5 140573462 140573462 A C PCDHB10 Missense_Mutation p.D446A 0.20 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-CG-5721-01 5 140590145 140590145 G A PCDHB12 Missense_Mutation p.D556N 0.24 deleterious_low_confidence(0.01) probably_damaging(0.992) TCGA-CG-5721-01 5 140725675 140725675 A G PCDHGA3 Missense_Mutation p.Y692C 0.13 deleterious_low_confidence(0) possibly_damaging(0.77) TCGA-CG-5721-01 5 140735157 140735157 A G PCDHGA4 Silent p.P130P 0.16 TCGA-CG-5721-01 5 140751421 140751421 T C PCDHGB3 Missense_Mutation p.V487A 0.13 deleterious(0) probably_damaging(0.991) TCGA-CG-5721-01 5 140772702 140772702 A G PCDHGA8 Missense_Mutation p.T108A 0.20 deleterious_low_confidence(0) benign(0.009) TCGA-CG-5721-01 5 140782733 140782733 A G PCDHGA9 Missense_Mutation p.T72A 0.18 tolerated_low_confidence(0.1) benign(0.057) TCGA-CG-5721-01 5 140782869 140782869 A G PCDHGA9 Missense_Mutation p.Y117C 0.17 deleterious_low_confidence(0) benign(0.239) TCGA-CG-5721-01 5 140794829 140794829 A G PCDHGA10 Missense_Mutation p.Y696C 0.13 deleterious_low_confidence(0) possibly_damaging(0.743) TCGA-CG-5721-01 5 140797840 140797840 A G PCDHGB7 Missense_Mutation p.I138M 0.27 tolerated(0.08) benign(0.378) TCGA-CG-5721-01 5 140801979 140801979 A G PCDHGA11 Silent p.L395L 0.21 TCGA-CG-5721-01 5 140812322 140812322 G A PCDHGA12 Missense_Mutation p.D666N 0.26 tolerated_low_confidence(0.13) benign(0.172) TCGA-CG-5721-01 5 140865090 140865090 A G PCDHGC4 Missense_Mutation p.Y117C 0.19 deleterious(0.04) probably_damaging(0.96) TCGA-CG-5721-01 5 140958698 140958698 G A DIAPH1 Missense_Mutation p.P297L 0.25 unknown(0) TCGA-CG-5721-01 5 141243673 141243673 G A PCDH1 Silent p.A741A 0.16 TCGA-CG-5721-01 5 141248257 141248257 G A PCDH1 Silent p.R260R 0.26 TCGA-CG-5721-01 5 143540084 143540084 T G YIPF5 Silent p.G217G 0.16 TCGA-CG-5721-01 5 143587110 143587110 G A KCTD16 Splice_Site p.X278_splice 0.17 TCGA-CG-5721-01 5 145493676 145493676 A G LARS Missense_Mutation p.V1175A 0.19 deleterious(0.05) benign(0.14) TCGA-CG-5721-01 5 145895104 145895104 T C GPR151 Silent p.V191V 0.23 TCGA-CG-5721-01 5 146236077 146236077 T C PPP2R2B Intron 0.23 TCGA-CG-5721-01 5 146792252 146792252 C T DPYSL3 Splice_Site p.X295_splice 0.17 TCGA-CG-5721-01 5 14692970 14692970 T C FAM105B Missense_Mutation p.M291T 0.21 deleterious(0) probably_damaging(0.931) TCGA-CG-5721-01 5 147019216 147019216 G A JAKMIP2 Silent p.I503I 0.06 TCGA-CG-5721-01 5 147902878 147902878 A G HTR4 Missense_Mutation p.Y129H 0.12 tolerated(0.07) benign(0.284) TCGA-CG-5721-01 5 148388499 148388499 C T SH3TC2 Silent p.K1131K 0.19 TCGA-CG-5721-01 5 148388548 148388548 A G SH3TC2 Missense_Mutation p.L1115S 0.20 deleterious(0) probably_damaging(0.912) TCGA-CG-5721-01 5 148431762 148431762 A G SH3TC2 Missense_Mutation p.C32R 0.17 tolerated(0.35) benign(0.021) TCGA-CG-5721-01 5 148617149 148617149 A G ABLIM3 Missense_Mutation p.R343G 0.19 deleterious(0) benign(0.354) TCGA-CG-5721-01 5 149003693 149003693 C T ARHGEF37 Missense_Mutation p.P485L 0.22 tolerated(0.07) possibly_damaging(0.502) TCGA-CG-5721-01 5 149669242 149669242 G A CAMK2A 5'Flank 0.33 TCGA-CG-5721-01 5 149677489 149677489 A G ARSI Missense_Mutation p.L333P 0.19 deleterious(0) probably_damaging(0.998) TCGA-CG-5721-01 5 150310313 150310313 T C ZNF300P1 RNA 0.27 TCGA-CG-5721-01 5 150410293 150410293 T C TNIP1 Missense_Mutation p.D631G 0.23 tolerated_low_confidence(0.43) benign(0.002) TCGA-CG-5721-01 5 150484828 150484828 T C ANXA6 Missense_Mutation p.D606G 0.10 deleterious(0) probably_damaging(0.98) TCGA-CG-5721-01 5 150900933 150900933 C G FAT2 Missense_Mutation p.V3741L 0.18 benign(0.059) TCGA-CG-5721-01 5 151052748 151052748 C T SPARC Silent p.V50V 0.24 TCGA-CG-5721-01 5 151170481 151170481 T C G3BP1 Missense_Mutation p.F70S 0.28 deleterious(0) possibly_damaging(0.857) TCGA-CG-5721-01 5 153792536 153792536 C T GALNT10 Missense_Mutation p.R492C 0.25 tolerated(0.05) probably_damaging(0.949) TCGA-CG-5721-01 5 154173252 154173252 A G LARP1 Silent p.R202R 0.17 TCGA-CG-5721-01 5 154284949 154284949 T C GEMIN5 Missense_Mutation p.K828R 0.11 tolerated(0.28) benign(0.047) TCGA-CG-5721-01 5 154394631 154394631 T C KIF4B Silent p.R404R 0.18 TCGA-CG-5721-01 5 154396976 154396976 C T KIF4B Missense_Mutation p.A1186V 0.11 tolerated_low_confidence(0.26) benign(0.002) TCGA-CG-5721-01 5 15500671 15500671 G - FBXL7 5'UTR 0.26 TCGA-CG-5721-01 5 156186481 156186481 A G SGCD 3'UTR 0.20 TCGA-CG-5721-01 5 156769912 156769912 C A FNDC9 Silent p.G211G 0.20 TCGA-CG-5721-01 5 157053373 157053373 T A SOX30 Missense_Mutation p.E746V 0.15 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 5 158135143 158135143 G T EBF1 Missense_Mutation p.L530I 0.25 deleterious_low_confidence(0.02) benign(0.002) TCGA-CG-5721-01 5 15928130 15928130 A G FBXL7 Missense_Mutation p.M87V 0.24 tolerated(0.63) benign(0) TCGA-CG-5721-01 5 15928377 15928377 C T FBXL7 Missense_Mutation p.A169V 0.16 tolerated(0.05) probably_damaging(0.968) TCGA-CG-5721-01 5 1593304 1593304 G A CTD-2012J19.3 5'Flank 0.17 TCGA-CG-5721-01 5 159659203 159659203 G A FABP6 Missense_Mutation p.G105R 0.26 deleterious(0.01) possibly_damaging(0.837) TCGA-CG-5721-01 5 159835377 159835377 T C SLU7 Missense_Mutation p.I260V 0.19 deleterious(0.05) possibly_damaging(0.903) TCGA-CG-5721-01 5 160757965 160757965 C - GABRB2 Frame_Shift_Del p.Q336Nfs*71 0.16 TCGA-CG-5721-01 5 161113279 161113279 T C GABRA6 Missense_Mutation p.Y28H 0.18 tolerated(0.53) benign(0.401) TCGA-CG-5721-01 5 161128810 161128810 G C GABRA6 3'UTR 0.21 TCGA-CG-5721-01 5 161318037 161318037 A G GABRA1 Silent p.V279V 0.16 TCGA-CG-5721-01 5 162886992 162886992 T C NUDCD2 Missense_Mutation p.Y22C 0.15 tolerated(0.12) benign(0.225) TCGA-CG-5721-01 5 16670845 16670845 C T MYO10 Silent p.R1891R 0.11 TCGA-CG-5721-01 5 167645692 167645692 A G TENM2 Missense_Mutation p.D1599G 0.24 deleterious(0.04) benign(0.103) TCGA-CG-5721-01 5 167850759 167850759 C T WWC1 Missense_Mutation p.T499I 0.20 deleterious(0) probably_damaging(0.996) TCGA-CG-5721-01 5 168098380 168098380 T C SLIT3 Missense_Mutation p.D1317G 0.18 deleterious(0.01) benign(0.015) TCGA-CG-5721-01 5 168176497 168176497 A C SLIT3 Missense_Mutation p.I706S 0.20 tolerated(0.62) benign(0.013) TCGA-CG-5721-01 5 169145773 169145773 C T DOCK2 Missense_Mutation p.R749W 0.16 deleterious(0) probably_damaging(0.997) TCGA-CG-5721-01 5 169454930 169454930 T C DOCK2 Missense_Mutation p.Y1149H 0.17 deleterious(0) probably_damaging(0.987) TCGA-CG-5721-01 5 171318497 171318497 T C FBXW11 Missense_Mutation p.S255G 0.14 deleterious(0) probably_damaging(0.957) TCGA-CG-5721-01 5 171638962 171638962 G A UBTD2 Missense_Mutation p.R193W 0.19 deleterious(0) probably_damaging(0.998) TCGA-CG-5721-01 5 171766816 171766816 C T SH3PXD2B Silent p.A431A 0.25 TCGA-CG-5721-01 5 171774309 171774309 G - SH3PXD2B Frame_Shift_Del p.P347Lfs*6 0.18 TCGA-CG-5721-01 5 172195808 172195808 A G DUSP1 Missense_Mutation p.L354P 0.20 deleterious(0) benign(0.049) TCGA-CG-5721-01 5 172386967 172386967 T C RPL26L1 Missense_Mutation p.S31P 0.21 deleterious(0.03) benign(0.002) TCGA-CG-5721-01 5 172517887 172517887 A - CREBRF Frame_Shift_Del p.K237Rfs*4 0.21 TCGA-CG-5721-01 5 172590823 172590823 C T BNIP1 Missense_Mutation p.R239C 0.20 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 5 172755145 172755145 T C STC2 Missense_Mutation p.T18A 0.20 tolerated(0.39) benign(0.175) TCGA-CG-5721-01 5 17354445 17354445 T C CTD-2139B15.2 RNA 0.22 TCGA-CG-5721-01 5 175772238 175772238 T C SIMC1 Silent p.I388I 0.21 TCGA-CG-5721-01 5 176004743 176004743 G A CDHR2 Missense_Mutation p.V486I 0.24 tolerated(0.36) benign(0.005) TCGA-CG-5721-01 5 176005416 176005416 A G CDHR2 Missense_Mutation p.N542S 0.23 deleterious(0.02) possibly_damaging(0.728) TCGA-CG-5721-01 5 176011443 176011443 G A CDHR2 Missense_Mutation p.A721T 0.21 deleterious(0.01) possibly_damaging(0.595) TCGA-CG-5721-01 5 176016062 176016062 G A CDHR2 Missense_Mutation p.V963I 0.18 tolerated(0.19) benign(0.015) TCGA-CG-5721-01 5 176017111 176017111 A G CDHR2 Missense_Mutation p.Y1080C 0.20 deleterious(0.01) probably_damaging(0.995) TCGA-CG-5721-01 5 176304606 176304606 A G UNC5A Missense_Mutation p.T513A 0.25 tolerated(0.07) possibly_damaging(0.669) TCGA-CG-5721-01 5 176830304 176830304 G T F12 Silent p.P494P 0.20 TCGA-CG-5721-01 5 176939332 176939332 T C DDX41 Missense_Mutation p.K538E 0.18 deleterious(0.04) benign(0.281) TCGA-CG-5721-01 5 176958383 176958383 C T FAM193B Intron 0.33 TCGA-CG-5721-01 5 177548744 177548744 C T N4BP3 Silent p.S459S 0.19 TCGA-CG-5721-01 5 177576696 177576696 A C NHP2 3'UTR 0.20 TCGA-CG-5721-01 5 177651540 177651540 C - PHYKPL Frame_Shift_Del p.G176Afs*18 0.22 TCGA-CG-5721-01 5 178040801 178040801 G A CLK4 Missense_Mutation p.R196C 0.19 tolerated(0.06) probably_damaging(0.988) TCGA-CG-5721-01 5 178413444 178413444 A G GRM6 Missense_Mutation p.V604A 0.17 tolerated(0.22) benign(0.005) TCGA-CG-5721-01 5 178552049 178552049 G A ADAMTS2 Silent p.D961D 0.24 TCGA-CG-5721-01 5 178699958 178699958 C T ADAMTS2 Silent p.R214R 0.26 TCGA-CG-5721-01 5 179021905 179021905 C T RUFY1 Silent p.I484I 0.18 TCGA-CG-5721-01 5 179050041 179050041 A - HNRNPH1 Frame_Shift_Del p.S32Lfs*40 0.24 TCGA-CG-5721-01 5 179290695 179290695 T C TBC1D9B Missense_Mutation p.D1169G 0.20 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CG-5721-01 5 179320379 179320379 G A TBC1D9B Silent p.R222R 0.22 TCGA-CG-5721-01 5 179663507 179663507 G A MAPK9 Silent p.N384N 0.16 TCGA-CG-5721-01 5 179994949 179994949 A G CNOT6 Missense_Mutation p.N325D 0.24 deleterious(0.01) possibly_damaging(0.733) TCGA-CG-5721-01 5 180374580 180374580 T - BTNL8 Frame_Shift_Del p.F249Lfs*6 0.24 TCGA-CG-5721-01 5 180477189 180477189 T C BTNL9 Missense_Mutation p.W186R 0.19 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 5 180651770 180651770 G A TRIM41 Silent p.Q257Q 0.14 TCGA-CG-5721-01 5 180661133 180661133 C T TRIM41 Intron 0.09 TCGA-CG-5721-01 5 180662116 180662116 A G TRIM41 3'UTR 0.22 TCGA-CG-5721-01 5 1880905 1880905 C - IRX4 Frame_Shift_Del p.G114Afs*71 0.23 TCGA-CG-5721-01 5 19520773 19520773 G T CDH18 Missense_Mutation p.P502H 0.13 deleterious(0.01) benign(0.006) TCGA-CG-5721-01 5 240561 240561 A G SDHA Silent p.R507R 0.09 TCGA-CG-5721-01 5 24593567 24593567 T A CDH10 Silent p.L11L 0.05 TCGA-CG-5721-01 5 26885845 26885845 C T CDH9 Missense_Mutation p.R587H 0.31 tolerated(0.07) possibly_damaging(0.787) TCGA-CG-5721-01 5 31305309 31305309 A T CDH6 Missense_Mutation p.Y343F 0.15 tolerated(0.07) benign(0.038) TCGA-CG-5721-01 5 32052721 32052721 A G PDZD2 Missense_Mutation p.Y557C 0.18 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 5 32061149 32061149 G A PDZD2 Missense_Mutation p.R787H 0.23 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 5 32390499 32390499 T C ZFR Missense_Mutation p.Q675R 0.21 tolerated(0.14) unknown(0) TCGA-CG-5721-01 5 32407032 32407032 T A ZFR Silent p.A293A 0.17 TCGA-CG-5721-01 5 32712294 32712294 T C NPR3 Missense_Mutation p.Y138H 0.16 deleterious(0.01) benign(0.196) TCGA-CG-5721-01 5 32712393 32712393 T C NPR3 Missense_Mutation p.Y171H 0.30 deleterious(0) probably_damaging(0.994) TCGA-CG-5721-01 5 33457407 33457407 C T TARS Nonsense_Mutation p.Q328* 0.15 TCGA-CG-5721-01 5 33751615 33751615 A G ADAMTS12 Silent p.I176I 0.14 TCGA-CG-5721-01 5 33937720 33937720 G A RXFP3 Missense_Mutation p.R292H 0.27 deleterious(0.03) possibly_damaging(0.881) TCGA-CG-5721-01 5 33984745 33984745 T C SLC45A2 5'UTR 0.27 TCGA-CG-5721-01 5 34824309 34824309 T C RAI14 Missense_Mutation p.S791P 0.20 tolerated(0.23) benign(0.394) TCGA-CG-5721-01 5 35026572 35026572 A G AGXT2 Silent p.D271D 0.17 TCGA-CG-5721-01 5 35065130 35065130 A G PRLR 3'UTR 0.24 TCGA-CG-5721-01 5 35957483 35957483 C T UGT3A1 Silent p.G294G 0.15 TCGA-CG-5721-01 5 3600153 3600153 A G IRX1 Missense_Mutation p.Y364C 0.18 deleterious(0) probably_damaging(0.984) TCGA-CG-5721-01 5 36035842 36035842 A G UGT3A2 Silent p.A510A 0.10 TCGA-CG-5721-01 5 36064364 36064364 A G UGT3A2 Silent p.G61G 0.16 TCGA-CG-5721-01 5 36985832 36985832 T C NIPBL Silent p.S850S 0.24 TCGA-CG-5721-01 5 37024793 37024793 G A NIPBL Missense_Mutation p.R1894H 0.17 deleterious(0) probably_damaging(0.997) TCGA-CG-5721-01 5 37703147 37703147 T C WDR70 Silent p.R458R 0.16 TCGA-CG-5721-01 5 38407115 38407115 A G EGFLAM Missense_Mutation p.I338M 0.20 tolerated(0.26) benign(0.002) TCGA-CG-5721-01 5 38464058 38464058 G A EGFLAM Silent p.G1008G 0.13 TCGA-CG-5721-01 5 38506631 38506631 A G LIFR Silent p.R365R 0.21 TCGA-CG-5721-01 5 38975672 38975672 T - RICTOR Frame_Shift_Del p.M286Wfs*4 0.18 TCGA-CG-5721-01 5 39376963 39376963 T C DAB2 Silent p.P642P 0.21 TCGA-CG-5721-01 5 39377133 39377133 T C DAB2 Missense_Mutation p.T586A 0.17 tolerated(0.53) benign(0) TCGA-CG-5721-01 5 41015568 41015568 T G MROH2B Missense_Mutation p.E966A 0.19 deleterious(0.01) benign(0.007) TCGA-CG-5721-01 5 41927177 41927177 T C FBXO4 Silent p.S84S 0.20 TCGA-CG-5721-01 5 42800733 42800733 T A SEPP1 3'UTR 0.19 TCGA-CG-5721-01 5 43161820 43161820 A G ZNF131 Missense_Mutation p.K247E 0.22 deleterious(0.01) possibly_damaging(0.796) TCGA-CG-5721-01 5 43486913 43486913 T C C5orf34 3'UTR 0.15 TCGA-CG-5721-01 5 43644365 43644365 T C NNT Silent p.L346L 0.17 TCGA-CG-5721-01 5 44811164 44811164 C T MRPS30 Missense_Mutation p.R219C 0.21 tolerated(0.12) benign(0.007) TCGA-CG-5721-01 5 49699039 49699039 A G EMB Missense_Mutation p.Y284H 0.16 tolerated(0.07) benign(0.055) TCGA-CG-5721-01 5 50123859 50123859 A - PARP8 Frame_Shift_Del p.K688Nfs*21 0.23 TCGA-CG-5721-01 5 50689512 50689512 A G ISL1 3'UTR 0.25 TCGA-CG-5721-01 5 5235263 5235263 C T ADAMTS16 Missense_Mutation p.R663W 0.16 tolerated(1) benign(0) TCGA-CG-5721-01 5 52856488 52856488 G A NDUFS4 5'UTR 0.16 TCGA-CG-5721-01 5 53839363 53839363 A G SNX18 3'UTR 0.33 TCGA-CG-5721-01 5 54569171 54569171 T C DHX29 Missense_Mutation p.T909A 0.16 deleterious(0.01) benign(0.292) TCGA-CG-5721-01 5 54591220 54591220 T C DHX29 Missense_Mutation p.D213G 0.13 tolerated(0.4) benign(0) TCGA-CG-5721-01 5 5473675 5473675 C T KIAA0947 Missense_Mutation p.A2076V 0.22 deleterious(0) probably_damaging(0.968) TCGA-CG-5721-01 5 5476116 5476116 G A KIAA0947 Nonsense_Mutation p.W2148* 0.23 TCGA-CG-5721-01 5 54948375 54948375 A - SLC38A9 Frame_Shift_Del p.S312Qfs*6 0.27 TCGA-CG-5721-01 5 56178088 56178089 AC - MAP3K1 Frame_Shift_Del p.Q1022Afs*13 0.15 TCGA-CG-5721-01 5 56509990 56509990 T C GPBP1 Silent p.L11L 0.21 TCGA-CG-5721-01 5 57755771 57755771 T C PLK2 Missense_Mutation p.T6A 0.15 deleterious_low_confidence(0.02) benign(0.052) TCGA-CG-5721-01 5 60241231 60241231 C T NDUFAF2 Intron 0.13 TCGA-CG-5721-01 5 61659541 61659541 G A KIF2A Missense_Mutation p.A428T 0.17 deleterious(0) probably_damaging(0.94) TCGA-CG-5721-01 5 61923155 61923155 A G IPO11 3'UTR 0.18 TCGA-CG-5721-01 5 63256867 63256867 C T HTR1A Missense_Mutation p.R227H 0.15 deleterious(0.04) probably_damaging(0.998) TCGA-CG-5721-01 5 63509837 63509837 A G RNF180 Silent p.S228S 0.21 TCGA-CG-5721-01 5 635582 635582 T C CEP72 Missense_Mutation p.C263R 0.14 tolerated(0.38) benign(0.014) TCGA-CG-5721-01 5 63803674 63803674 A G RGS7BP Missense_Mutation p.Q101R 0.10 tolerated_low_confidence(0.46) benign(0.145) TCGA-CG-5721-01 5 64879030 64879030 A G PPWD1 Missense_Mutation p.K506E 0.15 tolerated(0.07) benign(0.193) TCGA-CG-5721-01 5 64883278 64883278 T - PPWD1 3'UTR 0.31 TCGA-CG-5721-01 5 65084052 65084052 A G NLN Missense_Mutation p.I356V 0.17 deleterious(0.01) benign(0.182) TCGA-CG-5721-01 5 65324153 65324153 G A ERBB2IP Missense_Mutation p.M396I 0.12 deleterious(0.01) benign(0.141) TCGA-CG-5721-01 5 65350643 65350643 G A ERBB2IP Missense_Mutation p.R1166Q 0.23 tolerated(0.29) probably_damaging(0.998) TCGA-CG-5721-01 5 66478818 66478818 A G CD180 Missense_Mutation p.L618P 0.17 deleterious(0) probably_damaging(0.973) TCGA-CG-5721-01 5 66479818 66479818 G A CD180 Missense_Mutation p.R285C 0.18 deleterious(0.04) benign(0.433) TCGA-CG-5721-01 5 6668482 6668482 T C SRD5A1 3'UTR 0.25 TCGA-CG-5721-01 5 67522741 67522741 A - PIK3R1 Frame_Shift_Del p.I82Sfs*32 0.21 TCGA-CG-5721-01 5 67576486 67576487 - A PIK3R1 Frame_Shift_Ins p.N257Kfs*10 0.18 TCGA-CG-5721-01 5 678016 678016 C T TPPP Missense_Mutation p.A54T 0.14 tolerated(0.67) possibly_damaging(0.874) TCGA-CG-5721-01 5 68492938 68492938 T C CENPH Splice_Site p.X124_splice 0.27 TCGA-CG-5721-01 5 68687758 68687758 A G RAD17 Silent p.E380E 0.17 TCGA-CG-5721-01 5 68728430 68728430 A G MARVELD2 Missense_Mutation p.K420R 0.18 tolerated(0.3) benign(0.014) TCGA-CG-5721-01 5 70671642 70671643 - A RP11-136K7.2 Intron 0.21 TCGA-CG-5721-01 5 71756026 71756026 G A ZNF366 Missense_Mutation p.P433L 0.24 tolerated(0.09) possibly_damaging(0.865) TCGA-CG-5721-01 5 72173153 72173153 A G TNPO1 Silent p.V300V 0.18 TCGA-CG-5721-01 5 73048780 73048780 G A ARHGEF28 Silent p.S76S 0.15 TCGA-CG-5721-01 5 78076471 78076471 A G ARSB Missense_Mutation p.F451L 0.24 tolerated(0.21) benign(0.052) TCGA-CG-5721-01 5 78423758 78423758 G A BHMT Missense_Mutation p.S330N 0.25 tolerated(0.51) benign(0) TCGA-CG-5721-01 5 78610597 78610597 A G JMY Missense_Mutation p.H861R 0.07 tolerated(0.56) benign(0.009) TCGA-CG-5721-01 5 79031641 79031641 C T CMYA5 Silent p.I2351I 0.19 TCGA-CG-5721-01 5 79034435 79034436 - G CMYA5 Frame_Shift_Ins p.F3286Vfs*31 0.16 TCGA-CG-5721-01 5 79034494 79034494 T A CMYA5 Nonsense_Mutation p.Y3302* 0.17 TCGA-CG-5721-01 5 79095361 79095361 T C CMYA5 Silent p.P4044P 0.18 TCGA-CG-5721-01 5 79770525 79770525 C G ZFYVE16 Missense_Mutation p.T1446S 0.09 tolerated(0.39) benign(0.026) TCGA-CG-5721-01 5 79854405 79854405 T - ANKRD34B Frame_Shift_Del p.V479Cfs*20 0.19 TCGA-CG-5721-01 5 79854592 79854592 G - ANKRD34B Frame_Shift_Del p.P416Qfs*4 0.15 TCGA-CG-5721-01 5 80109433 80109433 G A MSH3 Missense_Mutation p.G896R 0.23 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 5 80503095 80503095 T A RASGRF2 Missense_Mutation p.S1000T 0.12 tolerated(1) benign(0.005) TCGA-CG-5721-01 5 80607037 80607037 T A ZCCHC9 Silent p.G212G 0.16 TCGA-CG-5721-01 5 82817461 82817461 C T VCAN Silent p.H1112H 0.17 TCGA-CG-5721-01 5 82832848 82832848 A G VCAN Silent p.V1342V 0.15 TCGA-CG-5721-01 5 82835440 82835440 C T VCAN Silent p.F2206F 0.19 TCGA-CG-5721-01 5 83360623 83360623 T C EDIL3 Missense_Mutation p.N283S 0.25 deleterious(0.01) benign(0.016) TCGA-CG-5721-01 5 87536644 87536644 T C TMEM161B Silent p.L31L 0.12 TCGA-CG-5721-01 5 89701581 89701581 T - CETN3 Frame_Shift_Del p.A64Lfs*4 0.23 TCGA-CG-5721-01 5 89949384 89949384 C T GPR98 Silent p.T1331T 0.23 TCGA-CG-5721-01 5 908157 908157 A G TRIP13 Missense_Mutation p.K243E 0.20 tolerated(1) benign(0.003) TCGA-CG-5721-01 5 9136697 9136697 C A SEMA5A Missense_Mutation p.W506C 0.15 deleterious(0) probably_damaging(0.992) TCGA-CG-5721-01 5 916037 916037 C T TRIP13 Silent p.S384S 0.19 TCGA-CG-5721-01 5 93410470 93410470 A G FAM172A 5'UTR 0.14 TCGA-CG-5721-01 5 94288931 94288931 A G MCTP1 Missense_Mutation p.Y325H 0.30 tolerated(0.18) probably_damaging(0.995) TCGA-CG-5721-01 5 94784099 94784099 A - FAM81B Frame_Shift_Del p.K387Rfs*13 0.16 TCGA-CG-5721-01 5 94859446 94859446 T C TTC37 Silent p.G515G 0.25 TCGA-CG-5721-01 5 94927320 94927320 A G ARSK Missense_Mutation p.T363A 0.19 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 5 95249473 95249473 A G ELL2 Splice_Site p.X161_splice 0.18 TCGA-CG-5721-01 5 96315402 96315402 G A LNPEP Missense_Mutation p.V194M 0.23 deleterious(0.01) probably_damaging(0.996) TCGA-CG-5721-01 5 96315595 96315595 C T LNPEP Missense_Mutation p.T258M 0.13 tolerated(0.21) possibly_damaging(0.861) TCGA-CG-5721-01 5 98209302 98209302 C T CHD1 Missense_Mutation p.R1189Q 0.16 tolerated(0.34) benign(0.001) TCGA-CG-5721-01 6 100062346 100062346 A G PRDM13 Missense_Mutation p.D612G 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-CG-5721-01 6 101054919 101054919 T C ASCC3 Missense_Mutation p.T1611A 0.17 tolerated(0.11) benign(0.163) TCGA-CG-5721-01 6 101296426 101296426 A G ASCC3 Silent p.A133A 0.16 TCGA-CG-5721-01 6 105736713 105736713 T - PREP Frame_Shift_Del p.G459Afs*2 0.18 TCGA-CG-5721-01 6 105781311 105781311 G A PREP Missense_Mutation p.T298M 0.19 deleterious(0.01) possibly_damaging(0.88) TCGA-CG-5721-01 6 107050772 107050772 C T RTN4IP1 Missense_Mutation p.G216R 0.22 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 6 107391162 107391162 G A BEND3 Silent p.A411A 0.27 TCGA-CG-5721-01 6 10764770 10764770 T C MAK Missense_Mutation p.N596S 0.21 tolerated(0.47) benign(0.003) TCGA-CG-5721-01 6 107780386 107780386 A G PDSS2 Missense_Mutation p.V35A 0.17 tolerated(0.51) benign(0.001) TCGA-CG-5721-01 6 10791920 10791920 T A MAK Missense_Mutation p.D435V 0.14 deleterious(0) benign(0.258) TCGA-CG-5721-01 6 108385478 108385478 G A OSTM1 Missense_Mutation p.A143V 0.25 tolerated(0.19) possibly_damaging(0.841) TCGA-CG-5721-01 6 108533273 108533273 C T SNX3 3'UTR 0.24 TCGA-CG-5721-01 6 109323528 109323528 G A SESN1 Missense_Mutation p.P100S 0.17 tolerated(0.15) probably_damaging(0.999) TCGA-CG-5721-01 6 109774467 109774467 C A MICAL1 Missense_Mutation p.K190N 0.19 tolerated(0.17) benign(0.438) TCGA-CG-5721-01 6 109787303 109787303 T C ZBTB24 Silent p.E615E 0.21 TCGA-CG-5721-01 6 109871543 109871543 A - AK9 Intron 0.21 TCGA-CG-5721-01 6 109962765 109962765 T C AK9 Missense_Mutation p.K297E 0.23 tolerated(0.07) possibly_damaging(0.833) TCGA-CG-5721-01 6 110300895 110300895 A T GPR6 Missense_Mutation p.T194S 0.22 tolerated(0.41) benign(0.09) TCGA-CG-5721-01 6 110434550 110434550 G A WASF1 Missense_Mutation p.L83F 0.26 deleterious(0) unknown(0) TCGA-CG-5721-01 6 110714482 110714482 C T DDO Silent p.P202P 0.16 TCGA-CG-5721-01 6 110943323 110943323 T C CDK19 Missense_Mutation p.N360D 0.17 tolerated(0.08) benign(0.071) TCGA-CG-5721-01 6 111214843 111214844 - A AMD1 3'UTR 0.14 TCGA-CG-5721-01 6 111543440 111543440 A G SLC16A10 3'UTR 0.17 TCGA-CG-5721-01 6 111587480 111587480 T - KIAA1919 Frame_Shift_Del p.Y241Mfs*6 0.14 TCGA-CG-5721-01 6 111628643 111628643 C T REV3L Missense_Mutation p.R3058Q 0.16 tolerated(0.09) probably_damaging(0.999) TCGA-CG-5721-01 6 111650832 111650832 C T REV3L Missense_Mutation p.R2715Q 0.19 deleterious(0.04) probably_damaging(0.997) TCGA-CG-5721-01 6 111880506 111880506 A - TRAF3IP2 3'UTR 0.18 TCGA-CG-5721-01 6 11190367 11190367 A G NEDD9 Missense_Mutation p.Y579H 0.12 tolerated(0.49) benign(0.008) TCGA-CG-5721-01 6 112015676 112015676 C T FYN Missense_Mutation p.R392Q 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-CG-5721-01 6 114178895 114178895 T C MARCKS 5'UTR 0.44 TCGA-CG-5721-01 6 117681045 117681045 T A ROS1 Missense_Mutation p.D1192V 0.19 deleterious(0) probably_damaging(0.987) TCGA-CG-5721-01 6 117709040 117709040 C T ROS1 Silent p.L639L 0.20 TCGA-CG-5721-01 6 118588225 118588225 A G SLC35F1 Missense_Mutation p.K182R 0.17 tolerated(1) benign(0.03) TCGA-CG-5721-01 6 118845081 118845081 A G CEP85L Silent p.V344V 0.18 TCGA-CG-5721-01 6 119252713 119252713 T C MCM9 Missense_Mutation p.N59S 0.16 tolerated(0.22) benign(0.296) TCGA-CG-5721-01 6 119345686 119345686 A G FAM184A Missense_Mutation p.I151T 0.21 deleterious(0) benign(0.197) TCGA-CG-5721-01 6 12131031 12131031 C T HIVEP1 Nonsense_Mutation p.R2081* 0.22 TCGA-CG-5721-01 6 123039072 123039072 T C PKIB Silent p.L52L 0.21 TCGA-CG-5721-01 6 125233370 125233370 A G RP11-510H23.1 RNA 0.17 TCGA-CG-5721-01 6 127768353 127768353 T - KIAA0408 Frame_Shift_Del p.R371Gfs*23 0.17 TCGA-CG-5721-01 6 127796588 127796588 G A SOGA3 Silent p.D861D 0.21 TCGA-CG-5721-01 6 128326374 128326374 T - PTPRK Frame_Shift_Del p.K783Nfs*13 0.16 TCGA-CG-5721-01 6 129511376 129511376 T C LAMA2 Silent p.S498S 0.13 TCGA-CG-5721-01 6 129649468 129649468 C T LAMA2 Missense_Mutation p.R1408C 0.21 deleterious(0) possibly_damaging(0.788) TCGA-CG-5721-01 6 129802514 129802514 C T LAMA2 Missense_Mutation p.S2560F 0.21 deleterious(0) probably_damaging(0.986) TCGA-CG-5721-01 6 131571635 131571635 T C AKAP7 Intron 0.22 TCGA-CG-5721-01 6 131911475 131911475 C T MED23 Missense_Mutation p.R1265H 0.19 tolerated(0.05) probably_damaging(0.987) TCGA-CG-5721-01 6 131944545 131944545 A G MED23 Silent p.L114L 0.16 TCGA-CG-5721-01 6 132006573 132006573 A G ENPP3 Missense_Mutation p.Y397C 0.16 tolerated(0.1) probably_damaging(0.997) TCGA-CG-5721-01 6 132892197 132892197 A G TAAR6 Missense_Mutation p.K246R 0.17 tolerated(0.14) benign(0.208) TCGA-CG-5721-01 6 133079002 133079002 T G VNN2 Silent p.P7P 0.24 TCGA-CG-5721-01 6 13486930 13486930 C T GFOD1 Missense_Mutation p.D65N 0.17 deleterious(0.05) probably_damaging(0.967) TCGA-CG-5721-01 6 135239850 135239850 C T ALDH8A1 Silent p.T389T 0.19 TCGA-CG-5721-01 6 13595769 13595769 C A SIRT5 Missense_Mutation p.P179Q 0.16 deleterious(0) possibly_damaging(0.693) TCGA-CG-5721-01 6 136599140 136599140 A G BCLAF1 Silent p.H293H 0.10 TCGA-CG-5721-01 6 136600996 136600996 G A BCLAF1 Silent p.R3R 0.27 TCGA-CG-5721-01 6 136682268 136682268 G A MAP7 Missense_Mutation p.R548C 0.12 deleterious(0) unknown(0) TCGA-CG-5721-01 6 136943991 136943992 - TC MAP3K5 Frame_Shift_Ins p.D715Efs*13 0.16 TCGA-CG-5721-01 6 137329777 137329777 C T IL20RA Missense_Mutation p.R228H 0.19 tolerated(0.56) benign(0.006) TCGA-CG-5721-01 6 138584111 138584111 C T KIAA1244 Silent p.N497N 0.32 TCGA-CG-5721-01 6 139262580 139262580 A G REPS1 Missense_Mutation p.F343L 0.17 deleterious(0) probably_damaging(0.998) TCGA-CG-5721-01 6 139488248 139488248 C T HECA Missense_Mutation p.R367C 0.29 deleterious(0) probably_damaging(0.989) TCGA-CG-5721-01 6 139563930 139563930 T A TXLNB Silent p.G596G 0.20 TCGA-CG-5721-01 6 13977682 13977682 C - RNF182 Frame_Shift_Del p.K113Rfs*19 0.18 TCGA-CG-5721-01 6 143093607 143093607 G A HIVEP2 Missense_Mutation p.R757C 0.17 deleterious(0.02) possibly_damaging(0.855) TCGA-CG-5721-01 6 145095484 145095484 A G UTRN Silent p.L2872L 0.25 TCGA-CG-5721-01 6 145956616 145956616 T C EPM2A Silent p.L161L 0.15 TCGA-CG-5721-01 6 146127309 146127309 T C FBXO30 Missense_Mutation p.E78G 0.20 tolerated(0.06) benign(0.098) TCGA-CG-5721-01 6 148865705 148865705 C T SASH1 Silent p.S1033S 0.19 TCGA-CG-5721-01 6 149911891 149911891 G A GINM1 Missense_Mutation p.V304I 0.24 tolerated(0.61) benign(0.009) TCGA-CG-5721-01 6 150004383 150004383 A G LATS1 Silent p.P614P 0.18 TCGA-CG-5721-01 6 150004895 150004895 A G LATS1 Missense_Mutation p.S444P 0.20 tolerated_low_confidence(0.31) benign(0.001) TCGA-CG-5721-01 6 151130245 151130245 T C PLEKHG1 Missense_Mutation p.I306T 0.12 deleterious(0) possibly_damaging(0.889) TCGA-CG-5721-01 6 151153218 151153218 A - PLEKHG1 Frame_Shift_Del p.N991Ifs*4 0.21 TCGA-CG-5721-01 6 151671447 151671447 G A AKAP12 Missense_Mutation p.A641T 0.22 deleterious(0.01) possibly_damaging(0.891) TCGA-CG-5721-01 6 151672364 151672365 - C AKAP12 Frame_Shift_Ins p.T949Hfs*4 0.25 TCGA-CG-5721-01 6 151674211 151674211 T C AKAP12 Missense_Mutation p.V1562A 0.18 tolerated(1) benign(0.014) TCGA-CG-5721-01 6 151917602 151917602 A C CCDC170 Missense_Mutation p.T534P 0.20 deleterious(0) possibly_damaging(0.851) TCGA-CG-5721-01 6 152454461 152454461 G A SYNE1 Missense_Mutation p.R8651C 0.18 possibly_damaging(0.677) TCGA-CG-5721-01 6 152643022 152643022 C T SYNE1 Splice_Site p.X5306_splice 0.18 TCGA-CG-5721-01 6 152786491 152786491 T C SYNE1 Missense_Mutation p.I612V 0.14 benign(0.01) TCGA-CG-5721-01 6 152831446 152831446 C T SYNE1 Missense_Mutation p.V155M 0.22 benign(0.018) TCGA-CG-5721-01 6 153315653 153315653 T C MTRF1L Missense_Mutation p.T228A 0.23 tolerated(0.45) benign(0.008) TCGA-CG-5721-01 6 155114029 155114029 T C SCAF8 Silent p.L132L 0.16 TCGA-CG-5721-01 6 157522190 157522190 C G ARID1B Missense_Mutation p.P1488A 0.16 possibly_damaging(0.578) TCGA-CG-5721-01 6 157527749 157527749 A G ARID1B Missense_Mutation p.D1825G 0.17 probably_damaging(0.996) TCGA-CG-5721-01 6 157739925 157739925 C T TMEM242 Silent p.P72P 0.19 TCGA-CG-5721-01 6 158483115 158483115 T C SYNJ2 Missense_Mutation p.L349S 0.20 deleterious(0.01) possibly_damaging(0.809) TCGA-CG-5721-01 6 159262697 159262697 A G OSTCP1 RNA 0.19 TCGA-CG-5721-01 6 159642717 159642717 G A FNDC1 Missense_Mutation p.R252Q 0.13 deleterious(0) unknown(0) TCGA-CG-5721-01 6 160197274 160197274 A G ACAT2 Missense_Mutation p.T243A 0.22 tolerated(0.08) benign(0.022) TCGA-CG-5721-01 6 160466820 160466820 C T IGF2R Silent p.G603G 0.20 TCGA-CG-5721-01 6 160494304 160494304 G A IGF2R Missense_Mutation p.V1584M 0.11 tolerated(0.11) benign(0.145) TCGA-CG-5721-01 6 160560826 160560826 C T SLC22A1 Silent p.G401G 0.24 TCGA-CG-5721-01 6 160819102 160819102 A G SLC22A3 Missense_Mutation p.Y174C 0.19 deleterious(0) probably_damaging(0.997) TCGA-CG-5721-01 6 160858109 160858109 T G SLC22A3 Missense_Mutation p.I385S 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-CG-5721-01 6 160888714 160888714 C T LPAL2 RNA 0.21 TCGA-CG-5721-01 6 160898249 160898249 A T LPAL2 RNA 0.14 TCGA-CG-5721-01 6 161007564 161007564 G A LPA Missense_Mutation p.T1349M 0.23 tolerated(0.1) probably_damaging(0.999) TCGA-CG-5721-01 6 161162399 161162399 T C PLG Missense_Mutation p.V692A 0.21 deleterious(0.03) benign(0.285) TCGA-CG-5721-01 6 16141988 16141988 G T MYLIP Missense_Mutation p.K137N 0.17 tolerated(0.34) benign(0.013) TCGA-CG-5721-01 6 161523764 161523764 C T MAP3K4 Missense_Mutation p.S1270F 0.18 deleterious(0.01) benign(0.27) TCGA-CG-5721-01 6 161653160 161653160 T C AGPAT4 Missense_Mutation p.N29S 0.18 tolerated(0.05) probably_damaging(0.997) TCGA-CG-5721-01 6 1624322 1624322 G A GMDS 3'UTR 0.64 TCGA-CG-5721-01 6 163149299 163149299 A G PACRG Missense_Mutation p.N11S 0.04 tolerated_low_confidence(0.4) benign(0.003) TCGA-CG-5721-01 6 16326924 16326924 T C ATXN1 Missense_Mutation p.T540A 0.19 tolerated(0.56) benign(0.001) TCGA-CG-5721-01 6 16326947 16326947 T C ATXN1 Missense_Mutation p.N532S 0.13 tolerated(0.81) benign(0.004) TCGA-CG-5721-01 6 167417716 167417716 T - FGFR1OP Intron 0.14 TCGA-CG-5721-01 6 168947819 168947819 T C SMOC2 Silent p.L189L 0.15 TCGA-CG-5721-01 6 169064767 169064767 T C SMOC2 Silent p.H444H 0.17 TCGA-CG-5721-01 6 169621532 169621532 A G THBS2 Missense_Mutation p.Y1122H 0.12 tolerated(0.05) probably_damaging(0.918) TCGA-CG-5721-01 6 169625316 169625316 A G THBS2 Silent p.D899D 0.17 TCGA-CG-5721-01 6 169625355 169625355 G A THBS2 Silent p.D886D 0.21 TCGA-CG-5721-01 6 169648841 169648841 C T THBS2 Missense_Mutation p.G94S 0.20 tolerated(0.06) benign(0.002) TCGA-CG-5721-01 6 170105663 170105663 A G C6orf120 3'UTR 0.13 TCGA-CG-5721-01 6 170160061 170160062 - T ERMARD Frame_Shift_Ins p.P247Sfs*2 0.15 TCGA-CG-5721-01 6 170597560 170597560 C T DLL1 Missense_Mutation p.R146H 0.16 tolerated(0.09) possibly_damaging(0.886) TCGA-CG-5721-01 6 170632185 170632185 G A FAM120B Missense_Mutation p.V585I 0.24 tolerated(0.39) benign(0.41) TCGA-CG-5721-01 6 17628924 17628924 G A NUP153 Missense_Mutation p.A1169V 0.24 tolerated(0.08) benign(0.017) TCGA-CG-5721-01 6 17637582 17637582 G A NUP153 Nonsense_Mutation p.R756* 0.24 TCGA-CG-5721-01 6 22290499 22290499 A G PRL Silent p.G132G 0.16 TCGA-CG-5721-01 6 24403466 24403466 T C MRS2 Splice_Site p.X64_splice 0.24 TCGA-CG-5721-01 6 24547310 24547310 T C KIAA0319 3'UTR 0.20 TCGA-CG-5721-01 6 24601407 24601407 T - KIAA0319 5'UTR 0.26 TCGA-CG-5721-01 6 24666997 24666997 A G TDP2 Missense_Mutation p.F32L 0.14 deleterious(0.02) benign(0.263) TCGA-CG-5721-01 6 25652698 25652698 C T SCGN Missense_Mutation p.R23C 0.12 deleterious(0.02) possibly_damaging(0.776) TCGA-CG-5721-01 6 26043727 26043727 G A HIST1H2BB Silent p.T53T 0.20 TCGA-CG-5721-01 6 26056487 26056487 A G HIST1H1C Missense_Mutation p.V57A 0.15 deleterious(0) possibly_damaging(0.855) TCGA-CG-5721-01 6 26158506 26158506 A T HIST1H2BD Missense_Mutation p.S37C 0.20 deleterious_low_confidence(0) probably_damaging(0.915) TCGA-CG-5721-01 6 26251978 26251978 C T HIST1H2BH Missense_Mutation p.R34C 0.27 tolerated_low_confidence(0.06) unknown(0) TCGA-CG-5721-01 6 26463655 26463655 C T BTN2A1 Missense_Mutation p.T205M 0.23 tolerated(0.27) benign(0.148) TCGA-CG-5721-01 6 27114940 27114940 T C HIST1H2AH Silent p.A11A 0.18 TCGA-CG-5721-01 6 27799189 27799189 A C HIST1H4K Silent p.A39A 0.14 TCGA-CG-5721-01 6 27841075 27841075 T C HIST1H4L Missense_Mutation p.T72A 0.24 tolerated(0.05) benign(0.043) TCGA-CG-5721-01 6 28056918 28056918 A T ZNF165 Missense_Mutation p.E376D 0.18 deleterious(0.01) benign(0.071) TCGA-CG-5721-01 6 28093556 28093556 C T ZSCAN16 Missense_Mutation p.A112V 0.25 tolerated(0.16) probably_damaging(0.998) TCGA-CG-5721-01 6 28200920 28200920 C T ZSCAN9 Silent p.R434R 0.16 TCGA-CG-5721-01 6 28227368 28227368 G A NKAPL Silent p.G73G 0.26 TCGA-CG-5721-01 6 28294405 28294405 T C ZSCAN31 Silent p.V253V 0.13 TCGA-CG-5721-01 6 28963503 28963503 G A ZNF311 Missense_Mutation p.R426W 0.17 tolerated(0.19) benign(0.014) TCGA-CG-5721-01 6 29054534 29054534 A G OR2B3 Silent p.L164L 0.20 TCGA-CG-5721-01 6 29141711 29141711 T C OR2J2 Missense_Mutation p.V100A 0.21 tolerated(0.83) benign(0.012) TCGA-CG-5721-01 6 29142197 29142197 A G OR2J2 Missense_Mutation p.Q262R 0.19 deleterious(0.03) probably_damaging(0.941) TCGA-CG-5721-01 6 29275052 29275052 G A OR14J1 Missense_Mutation p.A196T 0.18 deleterious(0.05) possibly_damaging(0.665) TCGA-CG-5721-01 6 29394640 29394640 T C OR11A1 Missense_Mutation p.Y260C 0.25 deleterious(0) probably_damaging(0.987) TCGA-CG-5721-01 6 29694737 29694737 T A HLA-F Missense_Mutation p.Y372N 0.19 deleterious_low_confidence(0) possibly_damaging(0.683) TCGA-CG-5721-01 6 29796520 29796520 G A HLA-G Missense_Mutation p.A182T 0.11 tolerated_low_confidence(0.11) possibly_damaging(0.519) TCGA-CG-5721-01 6 30037082 30037082 A - PPP1R11 Frame_Shift_Del 0.16 TCGA-CG-5721-01 6 30078246 30078246 C T TRIM31 Missense_Mutation p.M241I 0.19 deleterious(0.05) benign(0.23) TCGA-CG-5721-01 6 30228370 30228370 C A HCG17 Intron 0.18 TCGA-CG-5721-01 6 30310084 30310084 C T TRIM39 3'UTR 0.22 TCGA-CG-5721-01 6 30673546 30673546 A G MDC1 Silent p.T1138T 0.23 TCGA-CG-5721-01 6 30712102 30712102 A G IER3 Missense_Mutation p.V65A 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-CG-5721-01 6 30866961 30866961 C T DDR1 Missense_Mutation p.P883L 0.13 deleterious(0) probably_damaging(0.983) TCGA-CG-5721-01 6 30867847 30867847 A T DDR1 3'UTR 0.20 TCGA-CG-5721-01 6 30887979 30887979 G A VARS2 Missense_Mutation p.G457R 0.12 deleterious(0) probably_damaging(0.914) TCGA-CG-5721-01 6 31323362 31323363 - G HLA-B Frame_Shift_Ins p.T211Dfs*10 0.21 TCGA-CG-5721-01 6 31515451 31515451 G - NFKBIL1 5'UTR 0.32 TCGA-CG-5721-01 6 31525506 31525506 C - NFKBIL1 Frame_Shift_Del p.W148Gfs*122 0.15 TCGA-CG-5721-01 6 3154142 3154142 G A TUBB2A Silent p.D431D 0.25 TCGA-CG-5721-01 6 31543582 31543582 G - TNF Frame_Shift_Del p.Q25Rfs*15 0.24 TCGA-CG-5721-01 6 31544976 31544984 AACCAGCTG - TNF In_Frame_Del p.N122_L124del 0.16 TCGA-CG-5721-01 6 31594921 31594921 A G PRRC2A Silent p.L412L 0.24 TCGA-CG-5721-01 6 31779558 31779558 A G HSPA1L Silent p.N64N 0.20 TCGA-CG-5721-01 6 31851644 31851644 T C EHMT2 Missense_Mutation p.Y952C 0.25 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 6 32017065 32017065 A G TNXB 5'Flank 0.27 TCGA-CG-5721-01 6 32020473 32020473 C G TNXB Missense_Mutation p.G3028A 0.07 probably_damaging(0.959) TCGA-CG-5721-01 6 32304400 32304400 G A C6orf10 Missense_Mutation p.A141V 0.18 deleterious(0.01) benign(0.037) TCGA-CG-5721-01 6 32632719 32632719 A G HLA-DQB1 Missense_Mutation p.Y79H 0.35 tolerated(0.07) benign(0.361) TCGA-CG-5721-01 6 32944141 32944141 A G BRD2 Missense_Mutation p.H242R 0.20 tolerated(0.43) benign(0.134) TCGA-CG-5721-01 6 33177562 33177562 G A RING1 Missense_Mutation p.G80R 0.20 deleterious(0.02) probably_damaging(0.986) TCGA-CG-5721-01 6 33246996 33246996 A G WDR46 3'UTR 0.20 TCGA-CG-5721-01 6 33281604 33281604 G A TAPBP Silent p.I25I 0.24 TCGA-CG-5721-01 6 33411288 33411288 G A SYNGAP1 Missense_Mutation p.D987N 0.17 tolerated(0.17) probably_damaging(1) TCGA-CG-5721-01 6 34937796 34937796 C T ANKS1A Silent p.V96V 0.27 TCGA-CG-5721-01 6 35437285 35437285 A - RPL10A Frame_Shift_Del p.K98Nfs*19 0.23 TCGA-CG-5721-01 6 35854499 35854499 A G SRPK1 Splice_Site p.X160_splice 0.16 TCGA-CG-5721-01 6 35919034 35919034 A T SLC26A8 Missense_Mutation p.L793Q 0.16 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 6 35930388 35930388 G A SLC26A8 Missense_Mutation p.A459V 0.27 deleterious(0) probably_damaging(0.944) TCGA-CG-5721-01 6 36274133 36274133 C T PNPLA1 Silent p.T483T 0.15 TCGA-CG-5721-01 6 36452576 36452576 A - KCTD20 Frame_Shift_Del p.N316Tfs*64 0.16 TCGA-CG-5721-01 6 36463593 36463593 C - STK38 Frame_Shift_Del p.A456Qfs*6 0.20 TCGA-CG-5721-01 6 36993651 36993651 C T FGD2 Silent p.Y514Y 0.21 TCGA-CG-5721-01 6 37298880 37298880 C T TBC1D22B Silent p.L484L 0.15 TCGA-CG-5721-01 6 38723785 38723785 C T DNAH8 Missense_Mutation p.A265V 0.11 benign(0.378) TCGA-CG-5721-01 6 38738314 38738314 T - DNAH8 Frame_Shift_Del p.C366Afs*10 0.17 TCGA-CG-5721-01 6 38843564 38843564 C A DNAH8 Silent p.G2389G 0.24 TCGA-CG-5721-01 6 38919215 38919215 C T DNAH8 Missense_Mutation p.R3907W 0.18 possibly_damaging(0.883) TCGA-CG-5721-01 6 38998045 38998045 T C DNAH8 Silent p.C4450C 0.23 TCGA-CG-5721-01 6 39267322 39267322 G A KCNK17 Missense_Mutation p.P294S 0.21 tolerated(0.24) benign(0.008) TCGA-CG-5721-01 6 41166037 41166039 CTT - TREML2 In_Frame_Del p.K62del 0.16 TCGA-CG-5721-01 6 41184902 41184902 A G TREML3P RNA 0.14 TCGA-CG-5721-01 6 41739249 41739249 G - FRS3 Frame_Shift_Del p.P196Rfs*45 0.26 TCGA-CG-5721-01 6 41874716 41874716 C A MED20 3'UTR 0.15 TCGA-CG-5721-01 6 41875024 41875024 A G MED20 Missense_Mutation p.V142A 0.27 tolerated(0.06) benign(0.017) TCGA-CG-5721-01 6 42196264 42196265 - C TRERF1 Frame_Shift_Ins p.A1141Gfs*38 0.26 TCGA-CG-5721-01 6 42620271 42620271 C G UBR2 Missense_Mutation p.A886G 0.16 tolerated(0.2) benign(0) TCGA-CG-5721-01 6 42650804 42650804 A G UBR2 Missense_Mutation p.N1577S 0.16 tolerated(0.64) benign(0.001) TCGA-CG-5721-01 6 42832627 42832627 A - GLTSCR1L Frame_Shift_Del p.T897Qfs*8 0.23 TCGA-CG-5721-01 6 43012495 43012495 G A CUL7 Missense_Mutation p.S1140F 0.20 deleterious(0.03) possibly_damaging(0.789) TCGA-CG-5721-01 6 43023745 43023745 A G MRPL2 Missense_Mutation p.V174A 0.16 deleterious(0) possibly_damaging(0.902) TCGA-CG-5721-01 6 43025842 43025842 G A MRPL2 Missense_Mutation p.P76S 0.21 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 6 43226884 43226884 C T TTBK1 Silent p.P375P 0.23 TCGA-CG-5721-01 6 43251480 43251480 C - TTBK1 Frame_Shift_Del p.R1003Gfs*91 0.24 TCGA-CG-5721-01 6 43308192 43308192 G A ZNF318 Missense_Mutation p.R1182C 0.17 probably_damaging(0.987) TCGA-CG-5721-01 6 43410857 43410857 C T ABCC10 Silent p.D792D 0.17 TCGA-CG-5721-01 6 44116270 44116270 T C TMEM63B Missense_Mutation p.V381A 0.21 tolerated(1) benign(0.001) TCGA-CG-5721-01 6 44221447 44221447 T - HSP90AB1 3'UTR 0.19 TCGA-CG-5721-01 6 44222329 44222329 G A SLC35B2 3'UTR 0.14 TCGA-CG-5721-01 6 44250298 44250298 T C TCTE1 Splice_Site p.X283_splice 0.20 TCGA-CG-5721-01 6 44253990 44253990 T A TCTE1 Missense_Mutation p.N186I 0.18 deleterious(0.03) possibly_damaging(0.463) TCGA-CG-5721-01 6 45390355 45390355 C - RUNX2 Frame_Shift_Del p.S31Pfs*9 0.36 TCGA-CG-5721-01 6 46607340 46607340 T - CYP39A1 Frame_Shift_Del p.M127Wfs*13 0.18 TCGA-CG-5721-01 6 46826170 46826170 G A GPR116 Missense_Mutation p.T1157M 0.20 tolerated(0.19) benign(0.199) TCGA-CG-5721-01 6 47682298 47682298 T C GPR115 Silent p.R439R 0.23 TCGA-CG-5721-01 6 49438701 49438702 - A CENPQ Frame_Shift_Ins p.N42Kfs*2 0.22 TCGA-CG-5721-01 6 4943960 4943961 TA - CDYL Frame_Shift_Del p.M435Vfs*49 0.20 TCGA-CG-5721-01 6 49574880 49574880 A G RHAG Missense_Mutation p.V374A 0.30 tolerated(0.23) benign(0.042) TCGA-CG-5721-01 6 49753787 49753787 C T PGK2 Missense_Mutation p.G372R 0.17 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 6 50681777 50681777 T C TFAP2D Silent p.T3T 0.23 TCGA-CG-5721-01 6 52334208 52334208 A - EFHC1 Frame_Shift_Del p.D408Tfs*7 0.22 TCGA-CG-5721-01 6 52616454 52616455 - C GSTA2 Frame_Shift_Ins p.A156Gfs*2 0.18 TCGA-CG-5721-01 6 5369143 5369143 G A FARS2 Missense_Mutation p.D114N 0.18 tolerated(0.06) possibly_damaging(0.821) TCGA-CG-5721-01 6 54025582 54025582 T C MLIP Silent p.G293G 0.16 TCGA-CG-5721-01 6 54805207 54805207 C T FAM83B Nonsense_Mutation p.R480* 0.23 TCGA-CG-5721-01 6 54806569 54806569 T C FAM83B Missense_Mutation p.Y934H 0.20 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 6 55264054 55264054 A T GFRAL Silent p.G343G 0.19 TCGA-CG-5721-01 6 55441964 55441964 G A HMGCLL1 Missense_Mutation p.T37I 0.18 tolerated_low_confidence(0.29) benign(0.049) TCGA-CG-5721-01 6 55684535 55684535 A G BMP5 Missense_Mutation p.Y201H 0.22 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 6 56468029 56468029 T A DST Intron 0.15 TCGA-CG-5721-01 6 57512649 57512649 T C PRIM2 3'UTR 0.07 TCGA-CG-5721-01 6 6224953 6224953 G A F13A1 Silent p.G313G 0.21 TCGA-CG-5721-01 6 62688109 62688109 T C KHDRBS2 Silent p.E115E 0.17 TCGA-CG-5721-01 6 64394219 64394219 G - PHF3 Frame_Shift_Del p.R199Sfs*30 0.16 TCGA-CG-5721-01 6 70490403 70490403 A G LMBRD1 Missense_Mutation p.V97A 0.23 deleterious(0) probably_damaging(0.973) TCGA-CG-5721-01 6 70831829 70831829 A G COL19A1 Missense_Mutation p.N446D 0.21 tolerated(0.62) benign(0.002) TCGA-CG-5721-01 6 70909413 70909413 G A COL19A1 Missense_Mutation p.G1066R 0.24 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 6 71571705 71571705 A G SMAP1 3'UTR 0.30 TCGA-CG-5721-01 6 72806716 72806716 C T RIMS1 Missense_Mutation p.R104C 0.20 deleterious(0) probably_damaging(0.994) TCGA-CG-5721-01 6 74348179 74348179 G A SLC17A5 Missense_Mutation p.A190V 0.19 deleterious(0.01) probably_damaging(0.994) TCGA-CG-5721-01 6 74512960 74512960 C T CD109 Missense_Mutation p.L966F 0.25 deleterious(0.05) benign(0.053) TCGA-CG-5721-01 6 74516797 74516797 T C CD109 Splice_Site p.X1063_splice 0.07 TCGA-CG-5721-01 6 74528108 74528108 T C CD109 Intron 0.22 TCGA-CG-5721-01 6 7580913 7580913 G A DSP Missense_Mutation p.R1497Q 0.28 benign(0.238) TCGA-CG-5721-01 6 75848672 75848672 C T COL12A1 Missense_Mutation p.V1655M 0.20 probably_damaging(0.997) TCGA-CG-5721-01 6 76023993 76023993 T - FILIP1 Frame_Shift_Del p.I519* 0.15 TCGA-CG-5721-01 6 76072683 76072683 T C FILIP1 Intron 0.22 TCGA-CG-5721-01 6 76369098 76369099 - A SENP6 Frame_Shift_Ins p.C227Mfs*20 0.28 TCGA-CG-5721-01 6 7904918 7904918 T C TXNDC5 Missense_Mutation p.D101G 0.23 deleterious(0.01) possibly_damaging(0.464) TCGA-CG-5721-01 6 79577355 79577355 G A IRAK1BP1 Missense_Mutation p.R21Q 0.15 tolerated(0.64) benign(0.347) TCGA-CG-5721-01 6 79724917 79724917 A G PHIP Missense_Mutation p.V469A 0.21 deleterious(0.03) probably_damaging(0.973) TCGA-CG-5721-01 6 80749999 80749999 T C TTK Splice_Site p.X798_splice 0.21 TCGA-CG-5721-01 6 82950212 82950212 T C IBTK 5'UTR 0.17 TCGA-CG-5721-01 6 83819867 83819867 T C DOPEY1 Missense_Mutation p.V172A 0.21 deleterious(0) possibly_damaging(0.644) TCGA-CG-5721-01 6 83891476 83891476 T C PGM3 Missense_Mutation p.S284G 0.20 deleterious(0) possibly_damaging(0.568) TCGA-CG-5721-01 6 83933648 83933648 C T ME1 Missense_Mutation p.R427H 0.12 deleterious(0.01) possibly_damaging(0.784) TCGA-CG-5721-01 6 84234379 84234379 G A PRSS35 Missense_Mutation p.D407N 0.18 tolerated(0.35) benign(0.003) TCGA-CG-5721-01 6 86281916 86281916 T C SNX14 Missense_Mutation p.E119G 0.05 tolerated(0.06) probably_damaging(0.954) TCGA-CG-5721-01 6 87967280 87967280 G - ZNF292 Frame_Shift_Del p.G1313Vfs*12 0.22 TCGA-CG-5721-01 6 87969203 87969203 T A ZNF292 Silent p.P1952P 0.18 TCGA-CG-5721-01 6 87970974 87970974 A - ZNF292 Frame_Shift_Del p.R2545Gfs*14 0.15 TCGA-CG-5721-01 6 88210879 88210879 A G SLC35A1 Missense_Mutation p.T120A 0.19 deleterious(0) benign(0.314) TCGA-CG-5721-01 6 88229955 88229955 T - RARS2 Frame_Shift_Del p.K352Sfs*10 0.17 TCGA-CG-5721-01 6 88853864 88853864 G A CNR1 Missense_Mutation p.T377M 0.22 deleterious(0.03) probably_damaging(0.997) TCGA-CG-5721-01 6 89790771 89790771 C A PNRC1 Missense_Mutation p.P53Q 0.31 tolerated_low_confidence(0.14) probably_damaging(0.919) TCGA-CG-5721-01 6 90661192 90661192 G A BACH2 Silent p.D211D 0.21 TCGA-CG-5721-01 6 90661316 90661316 G A BACH2 Missense_Mutation p.T170M 0.23 deleterious(0.03) benign(0.416) TCGA-CG-5721-01 6 96974251 96974251 T C UFL1 Silent p.G135G 0.13 TCGA-CG-5721-01 6 97345721 97345721 A G NDUFAF4 5'UTR 0.24 TCGA-CG-5721-01 6 97562108 97562108 T C KLHL32 Silent p.S359S 0.21 TCGA-CG-5721-01 6 97679388 97679388 A T MMS22L Nonsense_Mutation p.Y481* 0.25 TCGA-CG-5721-01 6 97715821 97715821 A T MMS22L Missense_Mutation p.I252N 0.16 tolerated(0.38) benign(0.413) TCGA-CG-5721-01 6 99283815 99283815 A - POU3F2 Frame_Shift_Del p.K357Sfs*7 0.16 TCGA-CG-5721-01 6 99328484 99328484 C T FBXL4 Missense_Mutation p.S445N 0.19 tolerated(0.2) benign(0.05) TCGA-CG-5721-01 6 99828203 99828203 C T COQ3 Missense_Mutation p.R83K 0.24 tolerated(0.13) benign(0.002) TCGA-CG-5721-01 6 99936572 99936572 A - USP45 Frame_Shift_Del p.F201Lfs*17 0.17 TCGA-CG-5721-01 7 100086564 100086564 C T NYAP1 Missense_Mutation p.S407L 0.17 deleterious(0) probably_damaging(0.996) TCGA-CG-5721-01 7 100345207 100345207 A G ZAN Silent p.Q322Q 0.22 TCGA-CG-5721-01 7 100459368 100459368 T C SLC12A9 Missense_Mutation p.Y516H 0.16 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 7 100463584 100463584 G T SLC12A9 Missense_Mutation p.R701L 0.23 deleterious(0) probably_damaging(0.995) TCGA-CG-5721-01 7 100482368 100482368 A G SRRT Missense_Mutation p.N317S 0.17 tolerated(0.83) benign(0.001) TCGA-CG-5721-01 7 102113440 102113440 A G LRWD1 Missense_Mutation p.T630A 0.13 tolerated(0.12) benign(0.358) TCGA-CG-5721-01 7 102114133 102114133 T C POLR2J Splice_Site p.X107_splice 0.27 TCGA-CG-5721-01 7 102574928 102574928 G T LRRC17 Missense_Mutation p.A190S 0.23 deleterious(0.01) probably_damaging(0.946) TCGA-CG-5721-01 7 102669859 102669859 G A FBXL13 Missense_Mutation p.P3S 0.24 tolerated(0.07) possibly_damaging(0.685) TCGA-CG-5721-01 7 102738781 102738781 C T ARMC10 Silent p.H271H 0.18 TCGA-CG-5721-01 7 102963071 102963071 A G DNAJC2 Missense_Mutation p.Y274H 0.23 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 7 103029793 103029793 T C SLC26A5 Missense_Mutation p.T464A 0.17 tolerated(0.3) benign(0.325) TCGA-CG-5721-01 7 103033447 103033447 T C SLC26A5 Missense_Mutation p.I346M 0.19 deleterious(0.04) probably_damaging(0.999) TCGA-CG-5721-01 7 103179593 103179593 G A RELN Missense_Mutation p.A2371V 0.21 tolerated(0.5) benign(0.015) TCGA-CG-5721-01 7 104707256 104707256 T C KMT2E Splice_Site p.X166_splice 0.20 TCGA-CG-5721-01 7 104773245 104773245 G A SRPK2 Missense_Mutation p.A582V 0.14 deleterious(0) probably_damaging(0.981) TCGA-CG-5721-01 7 104782498 104782498 T C SRPK2 Silent p.R500R 0.20 TCGA-CG-5721-01 7 105111264 105111264 T G PUS7 Missense_Mutation p.E423D 0.18 tolerated(0.08) possibly_damaging(0.477) TCGA-CG-5721-01 7 105148916 105148917 - C PUS7 Frame_Shift_Ins p.A15Gfs*7 0.18 TCGA-CG-5721-01 7 106508581 106508581 A G PIK3CG Missense_Mutation p.D192G 0.15 deleterious(0.03) probably_damaging(0.971) TCGA-CG-5721-01 7 106519994 106519994 A - PIK3CG Frame_Shift_Del p.K809Nfs*68 0.17 TCGA-CG-5721-01 7 107334918 107334918 T C SLC26A4 Missense_Mutation p.L445S 0.21 deleterious(0) probably_damaging(0.993) TCGA-CG-5721-01 7 107564313 107564313 T C LAMB1 3'UTR 0.19 TCGA-CG-5721-01 7 107808754 107808754 A G NRCAM Missense_Mutation p.V1094A 0.18 tolerated(0.28) benign(0.033) TCGA-CG-5721-01 7 110764636 110764637 - A LRRN3 Frame_Shift_Ins p.C606Mfs*12 0.34 TCGA-CG-5721-01 7 112423920 112423920 T C TMEM168 Missense_Mutation p.T321A 0.16 tolerated(0.11) benign(0.11) TCGA-CG-5721-01 7 1131459 1131459 A G GPER1 Missense_Mutation p.N32S 0.17 tolerated_low_confidence(0.12) benign(0.007) TCGA-CG-5721-01 7 11415490 11415490 T C THSD7A Silent p.K1635K 0.16 TCGA-CG-5721-01 7 114270053 114270053 C T FOXP2 Missense_Mutation p.A222V 0.21 tolerated(0.25) unknown(0) TCGA-CG-5721-01 7 11676323 11676323 A G THSD7A Silent p.G152G 0.17 TCGA-CG-5721-01 7 116771955 116771956 GA - ST7 Frame_Shift_Del p.R197Kfs*5 0.17 TCGA-CG-5721-01 7 117003586 117003586 A - ASZ1 3'UTR 0.23 TCGA-CG-5721-01 7 120593419 120593419 A G ING3 Silent p.K54K 0.13 TCGA-CG-5721-01 7 121650430 121650430 A G PTPRZ1 Missense_Mutation p.N444D 0.18 tolerated(0.25) probably_damaging(0.993) TCGA-CG-5721-01 7 121753238 121753238 C T AASS Silent p.P404P 0.21 TCGA-CG-5721-01 7 121944256 121944256 G T FEZF1 Missense_Mutation p.P79H 0.22 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 7 123109382 123109382 C T IQUB Silent p.T489T 0.28 TCGA-CG-5721-01 7 123256454 123256454 A G ASB15 Missense_Mutation p.K66R 0.23 tolerated(0.35) benign(0.001) TCGA-CG-5721-01 7 123594255 123594255 C T SPAM1 Missense_Mutation p.R211W 0.16 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 7 123594523 123594523 T C SPAM1 Missense_Mutation p.V300A 0.22 deleterious(0) probably_damaging(0.947) TCGA-CG-5721-01 7 126173278 126173278 G - GRM8 Frame_Shift_Del p.H720Tfs*12 0.30 TCGA-CG-5721-01 7 126409971 126409971 A G GRM8 Silent p.S435S 0.15 TCGA-CG-5721-01 7 127724828 127724828 C - SND1 Frame_Shift_Del p.P723Lfs*2 0.23 TCGA-CG-5721-01 7 128451944 128451944 G - CCDC136 Frame_Shift_Del p.R708Gfs*3 0.23 TCGA-CG-5721-01 7 128505435 128505435 T C ATP6V1F Missense_Mutation p.F83L 0.15 deleterious(0.03) benign(0.311) TCGA-CG-5721-01 7 128655045 128655045 T C TNPO3 Silent p.V180V 0.04 TCGA-CG-5721-01 7 129098164 129098164 C T STRIP2 Nonsense_Mutation p.R383* 0.14 TCGA-CG-5721-01 7 129102882 129102882 G T STRIP2 Splice_Site p.X517_splice 0.19 TCGA-CG-5721-01 7 130138019 130138019 G A MEST Missense_Mutation p.V127M 0.28 tolerated(0.13) possibly_damaging(0.473) TCGA-CG-5721-01 7 131982902 131982902 T C PLXNA4 Missense_Mutation p.D484G 0.20 deleterious(0.02) probably_damaging(1) TCGA-CG-5721-01 7 133859333 133859333 A G LRGUK Missense_Mutation p.Y322C 0.23 tolerated(0.11) benign(0.062) TCGA-CG-5721-01 7 135258404 135258404 A - NUP205 Frame_Shift_Del p.N60Mfs*70 0.17 TCGA-CG-5721-01 7 138269744 138269744 A - TRIM24 3'UTR 0.21 TCGA-CG-5721-01 7 138601633 138601633 A G KIAA1549 Silent p.S913S 0.24 TCGA-CG-5721-01 7 138603524 138603524 A - KIAA1549 Frame_Shift_Del p.L283* 0.23 TCGA-CG-5721-01 7 139107145 139107145 A G LUC7L2 3'UTR 0.19 TCGA-CG-5721-01 7 139315945 139315945 T C HIPK2 Missense_Mutation p.D438G 0.15 tolerated(0.39) benign(0.013) TCGA-CG-5721-01 7 140394681 140394681 T A ADCK2 3'UTR 0.17 TCGA-CG-5721-01 7 140434564 140434564 C T BRAF Missense_Mutation p.A712T 0.22 deleterious(0.02) benign(0.284) TCGA-CG-5721-01 7 140534520 140534520 T C BRAF Silent p.L131L 0.24 TCGA-CG-5721-01 7 141301025 141301025 A - AGK Frame_Shift_Del p.N83Mfs*13 0.11 TCGA-CG-5721-01 7 141443490 141443490 T C SSBP1 Missense_Mutation p.V72A 0.20 tolerated_low_confidence(0.66) benign(0.002) TCGA-CG-5721-01 7 141731569 141731569 A G MGAM Silent p.Q520Q 0.16 TCGA-CG-5721-01 7 142448734 142448734 G A TRBV29-1 Missense_Mutation p.V110I 0.33 deleterious(0.02) benign(0.265) TCGA-CG-5721-01 7 142460323 142460323 C T PRSS1 Silent p.L166L 0.12 TCGA-CG-5721-01 7 142574268 142574268 A G TRPV6 Silent p.L219L 0.06 TCGA-CG-5721-01 7 142989724 142989724 C T CASP2 Silent p.Y136Y 0.16 TCGA-CG-5721-01 7 142991808 142991808 T C CASP2 Missense_Mutation p.V230A 0.09 tolerated(0.65) benign(0.008) TCGA-CG-5721-01 7 143095474 143095474 C T EPHA1 Silent p.A468A 0.22 TCGA-CG-5721-01 7 143556157 143556157 G A FAM115A Silent p.P755P 0.14 TCGA-CG-5721-01 7 144015756 144015756 T A OR2A1 Missense_Mutation p.I180N 0.16 deleterious(0) possibly_damaging(0.907) TCGA-CG-5721-01 7 144060468 144060468 C T ARHGEF5 Nonsense_Mutation p.Q236* 0.10 TCGA-CG-5721-01 7 148288118 148288118 G A C7orf33 Missense_Mutation p.R34H 0.24 tolerated_low_confidence(0.55) benign(0.051) TCGA-CG-5721-01 7 148875952 148875952 G A ZNF398 Missense_Mutation p.G330S 0.20 tolerated(0.23) probably_damaging(0.999) TCGA-CG-5721-01 7 148949824 148949824 C T ZNF212 Missense_Mutation p.A190V 0.15 tolerated(0.3) benign(0.004) TCGA-CG-5721-01 7 149148196 149148196 T C ZNF777 Silent p.A327A 0.20 TCGA-CG-5721-01 7 149152530 149152530 A G ZNF777 Missense_Mutation p.V195A 0.21 deleterious(0.01) probably_damaging(0.954) TCGA-CG-5721-01 7 149189961 149189961 T C ZNF746 Missense_Mutation p.D170G 0.36 deleterious(0.01) benign(0.009) TCGA-CG-5721-01 7 149191542 149191542 T C ZNF746 Missense_Mutation p.E26G 0.18 deleterious(0) probably_damaging(0.986) TCGA-CG-5721-01 7 149480000 149480000 C T SSPO RNA 0.20 TCGA-CG-5721-01 7 149522125 149522125 C T SSPO RNA 0.38 TCGA-CG-5721-01 7 150069806 150069806 C T REPIN1 Silent p.C549C 0.17 TCGA-CG-5721-01 7 150094516 150094516 G A ZNF775 Missense_Mutation p.R316H 0.33 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 7 150164279 150164279 T C GIMAP8 Missense_Mutation p.Y165H 0.19 deleterious(0.04) probably_damaging(0.997) TCGA-CG-5721-01 7 150746479 150746479 A G ASIC3 Silent p.Q169Q 0.08 TCGA-CG-5721-01 7 150936814 150936814 A G SMARCD3 Missense_Mutation p.S398P 0.15 deleterious(0.01) possibly_damaging(0.905) TCGA-CG-5721-01 7 151478262 151478262 T C PRKAG2 Missense_Mutation p.R148G 0.15 tolerated_low_confidence(0.07) benign(0.075) TCGA-CG-5721-01 7 151716998 151716998 A - GALNTL5 3'UTR 0.26 TCGA-CG-5721-01 7 151845715 151845715 C T KMT2C Missense_Mutation p.A4433T 0.25 probably_damaging(1) TCGA-CG-5721-01 7 151853312 151853312 G A KMT2C Silent p.A3930A 0.18 TCGA-CG-5721-01 7 151859654 151859654 T C KMT2C Missense_Mutation p.N3670D 0.17 benign(0.002) TCGA-CG-5721-01 7 151866269 151866269 A G KMT2C Splice_Site p.X3173_splice 0.17 TCGA-CG-5721-01 7 1527082 1527082 C - INTS1 Frame_Shift_Del p.R843Gfs*11 0.39 TCGA-CG-5721-01 7 154263973 154263973 A G DPP6 Missense_Mutation p.Y200C 0.15 deleterious(0) probably_damaging(0.953) TCGA-CG-5721-01 7 154679440 154679440 A G DPP6 Missense_Mutation p.Y767C 0.17 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 7 154748932 154748932 A G PAXIP1 Splice_Site p.X850_splice 0.13 TCGA-CG-5721-01 7 155531064 155531064 G A RBM33 Silent p.P568P 0.23 TCGA-CG-5721-01 7 156437357 156437357 A G RNF32 Missense_Mutation p.I60M 0.13 deleterious(0.03) benign(0.014) TCGA-CG-5721-01 7 157000100 157000100 T C UBE3C Missense_Mutation p.V476A 0.18 deleterious(0.04) benign(0.119) TCGA-CG-5721-01 7 157414139 157414139 G A PTPRN2 Silent p.C753C 0.20 TCGA-CG-5721-01 7 157929357 157929357 A G PTPRN2 Missense_Mutation p.L388P 0.14 tolerated(0.24) benign(0.177) TCGA-CG-5721-01 7 158472666 158472666 A G NCAPG2 Missense_Mutation p.F378L 0.18 tolerated(0.36) probably_damaging(0.984) TCGA-CG-5721-01 7 16815998 16815998 T - TSPAN13 Frame_Shift_Del p.Y78Ifs*2 0.15 TCGA-CG-5721-01 7 20698693 20698693 C - ABCB5 Intron 0.18 TCGA-CG-5721-01 7 21598618 21598618 T C DNAH11 Splice_Site p.X231_splice 0.22 TCGA-CG-5721-01 7 21744053 21744053 T C DNAH11 Missense_Mutation p.V2099A 0.15 possibly_damaging(0.61) TCGA-CG-5721-01 7 2274744 2274744 G T FTSJ2 3'UTR 0.14 TCGA-CG-5721-01 7 23340583 23340583 A G MALSU1 Missense_Mutation p.S128G 0.22 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 7 23387308 23387308 C T IGF2BP3 Silent p.S243S 0.13 TCGA-CG-5721-01 7 2472497 2472497 A G CHST12 Missense_Mutation p.S75G 0.21 tolerated(0.59) benign(0.001) TCGA-CG-5721-01 7 24881939 24881939 C T OSBPL3 Missense_Mutation p.A454T 0.17 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 7 2698073 2698073 C T TTYH3 Silent p.N468N 0.16 TCGA-CG-5721-01 7 27135357 27135357 C - HOXA1 Frame_Shift_Del p.V59Cfs*55 0.33 TCGA-CG-5721-01 7 27195919 27195919 G A HOXA7 Silent p.C82C 0.26 TCGA-CG-5721-01 7 28996503 28996503 A G AC005013.5 5'Flank 0.27 TCGA-CG-5721-01 7 2953031 2953031 T C CARD11 Missense_Mutation p.Y970C 0.21 tolerated(0.17) benign(0.144) TCGA-CG-5721-01 7 2979388 2979388 T C CARD11 Missense_Mutation p.I287V 0.25 deleterious(0.03) possibly_damaging(0.566) TCGA-CG-5721-01 7 2987388 2987388 G A CARD11 Missense_Mutation p.T14M 0.19 deleterious_low_confidence(0.04) benign(0.068) TCGA-CG-5721-01 7 29980470 29980470 A G SCRN1 Silent p.S209S 0.18 TCGA-CG-5721-01 7 29983717 29983717 A G SCRN1 Silent p.G160G 0.12 TCGA-CG-5721-01 7 30008756 30008756 A G SCRN1 Intron 0.50 TCGA-CG-5721-01 7 30825490 30825490 T C FAM188B Missense_Mutation p.I182T 0.22 tolerated(0.6) benign(0.001) TCGA-CG-5721-01 7 30931599 30931599 C T FAM188B Silent p.N751N 0.14 TCGA-CG-5721-01 7 31829718 31829718 G C PDE1C Intron 0.17 TCGA-CG-5721-01 7 32910428 32910428 A G KBTBD2 Missense_Mutation p.V134A 0.18 tolerated(0.17) benign(0.176) TCGA-CG-5721-01 7 32914664 32914664 A G KBTBD2 Silent p.G92G 0.07 TCGA-CG-5721-01 7 33303903 33303903 T C BBS9 Missense_Mutation p.Y207H 0.19 deleterious(0) possibly_damaging(0.89) TCGA-CG-5721-01 7 36462243 36462243 T C ANLN Silent p.T767T 0.18 TCGA-CG-5721-01 7 37354480 37354480 T C ELMO1 Missense_Mutation p.S56G 0.11 tolerated(1) benign(0) TCGA-CG-5721-01 7 38398364 38398364 A G TRGV3 Missense_Mutation p.S35P 0.17 deleterious(0.01) probably_damaging(0.987) TCGA-CG-5721-01 7 38505843 38505843 A G AMPH Missense_Mutation p.V199A 0.21 deleterious(0) benign(0.423) TCGA-CG-5721-01 7 38765894 38765894 A G VPS41 Silent p.S839S 0.09 TCGA-CG-5721-01 7 39500291 39500291 G A POU6F2 Silent p.A516A 0.24 TCGA-CG-5721-01 7 39503921 39503921 C T POU6F2 Missense_Mutation p.A571V 0.14 deleterious(0) unknown(0) TCGA-CG-5721-01 7 40041476 40041476 A - CDK13 Frame_Shift_Del p.V736Yfs*32 0.24 TCGA-CG-5721-01 7 4007008 4007008 A T SDK1 Silent p.T496T 0.19 TCGA-CG-5721-01 7 41729279 41729279 T C INHBA Missense_Mutation p.N417S 0.10 deleterious(0.02) possibly_damaging(0.664) TCGA-CG-5721-01 7 4198165 4198165 G A SDK1 Missense_Mutation p.V1571M 0.18 deleterious(0) benign(0.269) TCGA-CG-5721-01 7 4304866 4304866 A G SDK1 Silent p.A2164A 0.23 TCGA-CG-5721-01 7 4308313 4308313 A G SDK1 3'UTR 0.19 TCGA-CG-5721-01 7 44054286 44054286 C T SPDYE1 3'Flank 0.19 TCGA-CG-5721-01 7 44607803 44607803 G T DDX56 Missense_Mutation p.P468H 0.22 deleterious(0) probably_damaging(0.993) TCGA-CG-5721-01 7 44802571 44802571 A T ZMIZ2 Missense_Mutation p.H563L 0.21 deleterious(0.02) benign(0.289) TCGA-CG-5721-01 7 45005794 45005794 C T MYO1G Missense_Mutation p.G679R 0.10 deleterious(0) benign(0.026) TCGA-CG-5721-01 7 45717522 45717522 A G ADCY1 Missense_Mutation p.T554A 0.14 tolerated(1) benign(0.001) TCGA-CG-5721-01 7 45930221 45930221 G A IGFBP1 Missense_Mutation p.A142T 0.22 tolerated(0.49) benign(0.033) TCGA-CG-5721-01 7 47479116 47479116 A G TNS3 Missense_Mutation p.M40T 0.12 deleterious(0) probably_damaging(0.998) TCGA-CG-5721-01 7 4800720 4800720 G A FOXK1 Silent p.A574A 0.24 TCGA-CG-5721-01 7 48018405 48018405 T C HUS1 Missense_Mutation p.N21D 0.20 tolerated(0.33) benign(0.234) TCGA-CG-5721-01 7 4830774 4830774 A G AP5Z1 Missense_Mutation p.T728A 0.25 tolerated(0.14) benign(0.004) TCGA-CG-5721-01 7 48313721 48313721 T C ABCA13 Silent p.F1486F 0.17 TCGA-CG-5721-01 7 48391812 48391813 - T ABCA13 Frame_Shift_Ins p.R3474Qfs*43 0.17 TCGA-CG-5721-01 7 4856879 4856879 A G RADIL Silent p.Y573Y 0.17 TCGA-CG-5721-01 7 50467961 50467961 A G IKZF1 Missense_Mutation p.D357G 0.47 deleterious(0) probably_damaging(0.983) TCGA-CG-5721-01 7 50531075 50531075 T - DDC Frame_Shift_Del p.I433Sfs*98 0.24 TCGA-CG-5721-01 7 5104755 5104755 A G RBAK Silent p.E556E 0.23 TCGA-CG-5721-01 7 51095667 51095667 G A COBL Silent p.R1042R 0.18 TCGA-CG-5721-01 7 51096316 51096316 C T COBL Missense_Mutation p.R826Q 0.23 tolerated(0.36) benign(0.002) TCGA-CG-5721-01 7 5269339 5269339 A G WIPI2 Missense_Mutation p.T408A 0.18 tolerated(0.27) benign(0) TCGA-CG-5721-01 7 53103642 53103642 T C POM121L12 Missense_Mutation p.V93A 0.26 tolerated(0.24) benign(0.003) TCGA-CG-5721-01 7 5338952 5338952 T C SLC29A4 Missense_Mutation p.L368P 0.09 deleterious(0) probably_damaging(0.992) TCGA-CG-5721-01 7 5401582 5401582 T C TNRC18 Missense_Mutation p.Q1493R 0.25 benign(0.01) TCGA-CG-5721-01 7 55220349 55220349 G A EGFR Missense_Mutation p.D247N 0.13 deleterious(0.02) possibly_damaging(0.45) TCGA-CG-5721-01 7 56123451 56123451 T C CCT6A Silent p.R157R 0.16 TCGA-CG-5721-01 7 56128609 56128609 T C CCT6A Silent p.A441A 0.12 TCGA-CG-5721-01 7 56148962 56148962 G A PHKG1 Missense_Mutation p.R349W 0.12 deleterious(0) possibly_damaging(0.88) TCGA-CG-5721-01 7 56169481 56169481 T C CHCHD2 3'UTR 0.22 TCGA-CG-5721-01 7 5643159 5643159 G A FSCN1 Missense_Mutation p.R341H 0.14 tolerated(0.29) possibly_damaging(0.545) TCGA-CG-5721-01 7 64439903 64439903 A G ZNF117 Missense_Mutation p.Y16H 0.20 tolerated(1) benign(0.003) TCGA-CG-5721-01 7 64531410 64531410 T C SNORA22 3'Flank 0.09 TCGA-CG-5721-01 7 64863286 64863286 C T ZNF92 Missense_Mutation p.P87S 0.23 deleterious(0.05) probably_damaging(0.996) TCGA-CG-5721-01 7 65419289 65419289 G A VKORC1L1 3'UTR 0.17 TCGA-CG-5721-01 7 6624663 6624663 T C ZDHHC4 Silent p.C171C 0.16 TCGA-CG-5721-01 7 66413599 66413599 G A TMEM248 Missense_Mutation p.A172T 0.31 tolerated(0.59) benign(0.138) TCGA-CG-5721-01 7 66483036 66483036 G A TYW1 Missense_Mutation p.C256Y 0.21 deleterious(0.02) probably_damaging(0.976) TCGA-CG-5721-01 7 66660204 66660204 C A TYW1 Silent p.A619A 0.09 TCGA-CG-5721-01 7 6777346 6777346 G C PMS2CL RNA 0.29 TCGA-CG-5721-01 7 69064829 69064829 T C AUTS2 Missense_Mutation p.S64P 0.24 tolerated_low_confidence(0.31) possibly_damaging(0.566) TCGA-CG-5721-01 7 69064944 69064944 T C AUTS2 Missense_Mutation p.L102P 0.23 deleterious(0) possibly_damaging(0.528) TCGA-CG-5721-01 7 70886037 70886037 A G WBSCR17 Missense_Mutation p.Y303C 0.29 deleterious(0) probably_damaging(0.998) TCGA-CG-5721-01 7 72081820 72081820 A G TYW1B Missense_Mutation p.V167A 0.22 tolerated(0.09) probably_damaging(0.999) TCGA-CG-5721-01 7 72658488 72658488 T C GTF2IRD2P1 RNA 0.12 TCGA-CG-5721-01 7 72717250 72717250 T C NSUN5 3'UTR 0.14 TCGA-CG-5721-01 7 72717396 72717396 C G NSUN5 Nonstop_Mutation p.*471Sext*28 0.11 TCGA-CG-5721-01 7 72717856 72717856 C T NSUN5 Missense_Mutation p.R371Q 0.14 tolerated(0.5) benign(0.004) TCGA-CG-5721-01 7 72719018 72719018 C T NSUN5 Missense_Mutation p.A193T 0.27 deleterious(0.04) benign(0.006) TCGA-CG-5721-01 7 72892413 72892413 T C BAZ1B Missense_Mutation p.T460A 0.15 deleterious(0.03) benign(0.002) TCGA-CG-5721-01 7 73030508 73030508 C T MLXIPL Splice_Site p.X98_splice 0.23 TCGA-CG-5721-01 7 73471776 73471776 G A ELN Intron 0.27 TCGA-CG-5721-01 7 73646517 73646517 C T RFC2 Silent p.A328A 0.19 TCGA-CG-5721-01 7 73944085 73944085 A G GTF2IRD1 Missense_Mutation p.H403R 0.16 tolerated(0.07) benign(0.179) TCGA-CG-5721-01 7 7410437 7410437 C T COL28A1 Silent p.S995S 0.21 TCGA-CG-5721-01 7 7514247 7514247 T C COL28A1 Silent p.S429S 0.22 TCGA-CG-5721-01 7 7571101 7571101 T C COL28A1 Missense_Mutation p.T187A 0.17 tolerated(0.13) probably_damaging(0.946) TCGA-CG-5721-01 7 76241116 76241116 G A POMZP3 Silent p.C120C 0.10 TCGA-CG-5721-01 7 76254925 76254925 T C POMZP3 Silent p.V47V 0.20 TCGA-CG-5721-01 7 76254929 76254929 G C POMZP3 Missense_Mutation p.T46S 0.16 deleterious_low_confidence(0) unknown(0) TCGA-CG-5721-01 7 76883847 76883847 A G CCDC146 Missense_Mutation p.I158M 0.28 tolerated(0.07) benign(0.037) TCGA-CG-5721-01 7 76940744 76940744 A G GSAP Silent p.H832H 0.15 TCGA-CG-5721-01 7 76941475 76941475 A G GSAP Silent p.S772S 0.18 TCGA-CG-5721-01 7 77035409 77035409 G A GSAP Silent p.N41N 0.18 TCGA-CG-5721-01 7 77402579 77402579 C T RSBN1L Nonsense_Mutation p.R581* 0.21 TCGA-CG-5721-01 7 78119138 78119138 A G MAGI2 Missense_Mutation p.S329P 0.19 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 7 81372722 81372722 C T HGF Missense_Mutation p.C271Y 0.24 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 7 81372723 81372723 A G HGF Missense_Mutation p.C271R 0.24 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 7 81611899 81611899 T C CACNA2D1 Missense_Mutation p.T647A 0.15 tolerated(0.06) probably_damaging(0.998) TCGA-CG-5721-01 7 81643727 81643727 A G CACNA2D1 Silent p.C404C 0.10 TCGA-CG-5721-01 7 82453563 82453563 T C PCLO Missense_Mutation p.D4862G 0.21 unknown(0) TCGA-CG-5721-01 7 82584247 82584247 T C PCLO Missense_Mutation p.T2008A 0.20 unknown(0) TCGA-CG-5721-01 7 83037696 83037696 G A SEMA3E Missense_Mutation p.R220C 0.18 deleterious(0.01) probably_damaging(0.924) TCGA-CG-5721-01 7 83095872 83095872 T A SEMA3E Missense_Mutation p.T128S 0.23 deleterious(0.04) probably_damaging(0.997) TCGA-CG-5721-01 7 84649547 84649547 A G SEMA3D Splice_Site p.X501_splice 0.16 TCGA-CG-5721-01 7 86415866 86415866 G A GRM3 Missense_Mutation p.R253H 0.24 tolerated(0.07) benign(0.003) TCGA-CG-5721-01 7 86469092 86469092 C T GRM3 Silent p.Y754Y 0.22 TCGA-CG-5721-01 7 86811504 86811504 A G DMTF1 Intron 0.18 TCGA-CG-5721-01 7 86813838 86813838 C T DMTF1 Missense_Mutation p.R316C 0.19 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 7 86817425 86817425 A G DMTF1 Missense_Mutation p.K407E 0.17 tolerated(0.15) benign(0.012) TCGA-CG-5721-01 7 88964603 88964603 A G ZNF804B Missense_Mutation p.I769M 0.17 tolerated(0.36) benign(0.005) TCGA-CG-5721-01 7 89874693 89874693 G A C7orf63 5'UTR 0.44 TCGA-CG-5721-01 7 90895582 90895582 C G FZD1 Missense_Mutation p.L463V 0.19 deleterious(0) probably_damaging(0.979) TCGA-CG-5721-01 7 90895892 90895892 A C FZD1 Missense_Mutation p.E566A 0.13 tolerated(0.06) benign(0.3) TCGA-CG-5721-01 7 91630524 91630524 A G AKAP9 Silent p.E431E 0.18 TCGA-CG-5721-01 7 91709345 91709345 A - AKAP9 Frame_Shift_Del p.N2635Mfs*3 0.20 TCGA-CG-5721-01 7 91747922 91747922 T A CYP51A1 Missense_Mutation p.D365V 0.20 deleterious(0.01) possibly_damaging(0.51) TCGA-CG-5721-01 7 92247394 92247394 G A CDK6 Silent p.L276L 0.18 TCGA-CG-5721-01 7 92462455 92462455 C T CDK6 Silent p.E61E 0.21 TCGA-CG-5721-01 7 92760647 92760647 T C SAMD9L Missense_Mutation p.I1546M 0.16 deleterious(0) probably_damaging(0.993) TCGA-CG-5721-01 7 930607 930607 C T GET4 Missense_Mutation p.A170V 0.24 tolerated(0.25) benign(0.108) TCGA-CG-5721-01 7 94056542 94056542 A G COL1A2 Missense_Mutation p.T1068A 0.07 unknown(0) TCGA-CG-5721-01 7 94174901 94174901 A G CASD1 Silent p.V507V 0.18 TCGA-CG-5721-01 7 94293419 94293419 A G PEG10 Missense_Mutation p.Y184C 0.13 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 7 95034793 95034793 C T PON2 Missense_Mutation p.R305H 0.21 deleterious(0.02) possibly_damaging(0.553) TCGA-CG-5721-01 7 95665019 95665019 T C DYNC1I1 Missense_Mutation p.V457A 0.18 deleterious(0) probably_damaging(0.989) TCGA-CG-5721-01 7 95750584 95750584 C A SLC25A13 Silent p.G650G 0.22 TCGA-CG-5721-01 7 96639185 96639185 C - DLX6 Frame_Shift_Del p.L238Sfs*55 0.26 TCGA-CG-5721-01 7 97821801 97821801 A G LMTK2 Missense_Mutation p.N675S 0.17 tolerated(0.69) benign(0) TCGA-CG-5721-01 7 98506451 98506451 A G TRRAP Missense_Mutation p.I406V 0.13 benign(0.001) TCGA-CG-5721-01 7 99002549 99002549 G A PDAP1 Missense_Mutation p.A14V 0.15 tolerated(0.26) possibly_damaging(0.499) TCGA-CG-5721-01 7 99084556 99084556 G A ZNF789 Silent p.R241R 0.21 TCGA-CG-5721-01 7 99085182 99085182 T C ZNF789 3'UTR 0.19 TCGA-CG-5721-01 7 99091161 99091161 T C ZNF394 Silent p.S559S 0.04 TCGA-CG-5721-01 7 99129417 99129418 - A ZKSCAN5 Frame_Shift_Ins p.N691Kfs*5 0.17 TCGA-CG-5721-01 7 99441821 99441821 A G CYP3A43 Missense_Mutation p.T92A 0.20 tolerated(0.15) benign(0.009) TCGA-CG-5721-01 7 99707849 99707849 C T TAF6 Missense_Mutation p.A415T 0.22 tolerated(0.14) benign(0.346) TCGA-CG-5721-01 7 99778123 99778123 G A STAG3 5'UTR 0.19 TCGA-CG-5721-01 7 99779803 99779803 G A STAG3 Silent p.P69P 0.22 TCGA-CG-5721-01 8 100133733 100133733 T C VPS13B Intron 0.26 TCGA-CG-5721-01 8 100396469 100396469 C T VPS13B Missense_Mutation p.A953V 0.15 tolerated(0.16) probably_damaging(0.935) TCGA-CG-5721-01 8 100403908 100403908 C T VPS13B Missense_Mutation p.P1020S 0.17 deleterious(0.01) probably_damaging(0.968) TCGA-CG-5721-01 8 100711773 100711773 T A VPS13B Missense_Mutation p.S2048T 0.15 tolerated(0.09) possibly_damaging(0.483) TCGA-CG-5721-01 8 100833587 100833587 A G VPS13B Silent p.K3045K 0.18 TCGA-CG-5721-01 8 100871606 100871606 G A VPS13B Missense_Mutation p.D3673N 0.17 deleterious(0) possibly_damaging(0.555) TCGA-CG-5721-01 8 100871692 100871692 A G VPS13B Silent p.V3701V 0.23 TCGA-CG-5721-01 8 100974620 100974620 A G RGS22 Splice_Site 0.23 TCGA-CG-5721-01 8 101145885 101145885 A G FBXO43 3'UTR 0.17 TCGA-CG-5721-01 8 101154105 101154105 T - FBXO43 Frame_Shift_Del p.K126Rfs*33 0.19 TCGA-CG-5721-01 8 101270725 101270725 A G RNF19A 3'UTR 0.31 TCGA-CG-5721-01 8 103297965 103297965 G A UBR5 Missense_Mutation p.R1754W 0.20 deleterious(0) probably_damaging(0.988) TCGA-CG-5721-01 8 103312362 103312362 A G UBR5 Missense_Mutation p.M991T 0.08 deleterious(0.01) possibly_damaging(0.769) TCGA-CG-5721-01 8 103338886 103338886 A G UBR5 Missense_Mutation p.V496A 0.13 deleterious(0) possibly_damaging(0.673) TCGA-CG-5721-01 8 104330885 104330885 T C FZD6 Missense_Mutation p.V82A 0.20 tolerated(1) possibly_damaging(0.5) TCGA-CG-5721-01 8 10464358 10464358 A G RP1L1 3'UTR 0.22 TCGA-CG-5721-01 8 10469723 10469723 A G RP1L1 Missense_Mutation p.S629P 0.15 benign(0.004) TCGA-CG-5721-01 8 104898242 104898242 A - RIMS2 Frame_Shift_Del p.M474Wfs*5 0.11 TCGA-CG-5721-01 8 105263882 105263882 T C RIMS2 Missense_Mutation p.V1295A 0.18 tolerated_low_confidence(0.6) possibly_damaging(0.507) TCGA-CG-5721-01 8 105510164 105510164 G A LRP12 Missense_Mutation p.P206S 0.17 deleterious(0.03) benign(0.001) TCGA-CG-5721-01 8 10583646 10583646 G - SOX7 Frame_Shift_Del p.L309Wfs*14 0.33 TCGA-CG-5721-01 8 10677706 10677706 G A PINX1 Silent p.P156P 0.17 TCGA-CG-5721-01 8 107758085 107758085 T C OXR1 Silent p.G828G 0.13 TCGA-CG-5721-01 8 109260960 109260960 A G EIF3E 5'UTR 0.19 TCGA-CG-5721-01 8 110257628 110257628 A G NUDCD1 Missense_Mutation p.V461A 0.16 deleterious(0) probably_damaging(0.998) TCGA-CG-5721-01 8 110425663 110425663 A G PKHD1L1 Missense_Mutation p.Y750C 0.17 deleterious(0) possibly_damaging(0.784) TCGA-CG-5721-01 8 110432893 110432893 C - PKHD1L1 Frame_Shift_Del p.M892* 0.12 TCGA-CG-5721-01 8 110453524 110453524 A G PKHD1L1 Missense_Mutation p.T1374A 0.20 tolerated(0.14) benign(0.048) TCGA-CG-5721-01 8 110474095 110474095 A G PKHD1L1 Silent p.V2447V 0.30 TCGA-CG-5721-01 8 110980664 110980664 C T KCNV1 Missense_Mutation p.A386T 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-CG-5721-01 8 113256718 113256718 T C CSMD3 Missense_Mutation p.Y3436C 0.19 deleterious(0) probably_damaging(0.99) TCGA-CG-5721-01 8 113702138 113702138 T C CSMD3 Missense_Mutation p.Q705R 0.20 deleterious(0.01) probably_damaging(0.963) TCGA-CG-5721-01 8 11405571 11405571 A G BLK Missense_Mutation p.Y69C 0.10 deleterious(0) probably_damaging(0.985) TCGA-CG-5721-01 8 11420560 11420560 T C BLK Missense_Mutation p.V418A 0.18 deleterious(0.02) probably_damaging(0.989) TCGA-CG-5721-01 8 114449089 114449089 T C CSMD3 5'UTR 0.19 TCGA-CG-5721-01 8 116599390 116599390 C T TRPS1 Silent p.V846V 0.20 TCGA-CG-5721-01 8 116599584 116599585 TC - TRPS1 Frame_Shift_Del p.K782Afs*18 0.16 TCGA-CG-5721-01 8 116616290 116616290 T C TRPS1 Missense_Mutation p.T636A 0.11 tolerated_low_confidence(0.05) possibly_damaging(0.539) TCGA-CG-5721-01 8 116617019 116617019 T C TRPS1 Missense_Mutation p.N393D 0.20 tolerated_low_confidence(0.08) benign(0.133) TCGA-CG-5721-01 8 116631856 116631857 - G TRPS1 Frame_Shift_Ins p.S157Lfs*56 0.20 TCGA-CG-5721-01 8 11696164 11696164 T - FDFT1 3'UTR 0.26 TCGA-CG-5721-01 8 118825188 118825188 G A EXT1 Missense_Mutation p.R549C 0.18 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 8 118831934 118831934 T A EXT1 Missense_Mutation p.K506M 0.14 deleterious(0.04) possibly_damaging(0.547) TCGA-CG-5721-01 8 11995092 11995092 G A USP17L2 Missense_Mutation p.A393V 0.17 tolerated(0.26) benign(0.1) TCGA-CG-5721-01 8 120809270 120809270 C T TAF2 Missense_Mutation p.A351T 0.16 deleterious(0) probably_damaging(0.951) TCGA-CG-5721-01 8 120977536 120977536 A G DEPTOR Missense_Mutation p.T164A 0.15 tolerated(0.33) benign(0.03) TCGA-CG-5721-01 8 121061867 121061867 A G DEPTOR Missense_Mutation p.Y385C 0.17 tolerated(0.06) benign(0.06) TCGA-CG-5721-01 8 121327827 121327827 T C COL14A1 Splice_Site p.X1535_splice 0.19 TCGA-CG-5721-01 8 123964290 123964290 G T ZHX2 Silent p.S180S 0.24 TCGA-CG-5721-01 8 123965055 123965055 C - ZHX2 Frame_Shift_Del p.P437Rfs*15 0.29 TCGA-CG-5721-01 8 124140543 124140543 A G TBC1D31 Missense_Mutation p.N636S 0.20 tolerated(0.28) benign(0.05) TCGA-CG-5721-01 8 124164129 124164129 A G TBC1D31 Missense_Mutation p.T1051A 0.12 tolerated(0.77) benign(0.001) TCGA-CG-5721-01 8 124267009 124267009 T C ZHX1 Missense_Mutation p.Q393R 0.18 deleterious(0) possibly_damaging(0.686) TCGA-CG-5721-01 8 124348743 124348743 T C ATAD2 Silent p.Q1027Q 0.17 TCGA-CG-5721-01 8 124705988 124705988 T C ANXA13 Missense_Mutation p.K209R 0.22 tolerated(0.53) benign(0.005) TCGA-CG-5721-01 8 125015417 125015417 A G FER1L6 Silent p.G510G 0.19 TCGA-CG-5721-01 8 125498142 125498142 A G RNF139 Silent p.S84S 0.16 TCGA-CG-5721-01 8 125528239 125528239 T C TATDN1 Missense_Mutation p.T79A 0.16 deleterious(0) probably_damaging(0.996) TCGA-CG-5721-01 8 126087304 126087304 T C KIAA0196 Missense_Mutation p.E305G 0.25 deleterious(0.03) possibly_damaging(0.811) TCGA-CG-5721-01 8 12957275 12957275 G A DLC1 Silent p.S857S 0.25 TCGA-CG-5721-01 8 131812714 131812714 T C ADCY8 Silent p.E1006E 0.19 TCGA-CG-5721-01 8 132997309 132997309 T C EFR3A Splice_Site p.X623_splice 0.18 TCGA-CG-5721-01 8 133879302 133879302 C T TG Silent p.A19A 0.19 TCGA-CG-5721-01 8 133883660 133883660 C A TG Silent p.T114T 0.17 TCGA-CG-5721-01 8 133899319 133899319 C A TG Missense_Mutation p.L568I 0.19 tolerated(0.12) benign(0.037) TCGA-CG-5721-01 8 133900283 133900283 C T TG Missense_Mutation p.A744V 0.23 tolerated(0.33) benign(0.004) TCGA-CG-5721-01 8 134225274 134225274 C T WISP1 Silent p.C79C 0.21 TCGA-CG-5721-01 8 139164318 139164318 A G FAM135B Silent p.D800D 0.20 TCGA-CG-5721-01 8 139890062 139890062 C T COL22A1 Missense_Mutation p.V197I 0.13 unknown(0) TCGA-CG-5721-01 8 141542122 141542122 A G AGO2 3'UTR 0.18 TCGA-CG-5721-01 8 141542189 141542189 G A AGO2 Missense_Mutation p.A845V 0.15 deleterious(0.02) probably_damaging(0.969) TCGA-CG-5721-01 8 141566004 141566004 G A AGO2 Silent p.Y420Y 0.10 TCGA-CG-5721-01 8 142151331 142151331 G A DENND3 Silent p.T97T 0.22 TCGA-CG-5721-01 8 142160983 142160983 C T DENND3 Silent p.P182P 0.17 TCGA-CG-5721-01 8 142200505 142200505 G A DENND3 Missense_Mutation p.R1043H 0.10 tolerated(0.65) benign(0.003) TCGA-CG-5721-01 8 142228816 142228816 T C SLC45A4 Missense_Mutation p.D257G 0.20 deleterious(0) probably_damaging(0.976) TCGA-CG-5721-01 8 142367700 142367700 C T GPR20 Silent p.T108T 0.26 TCGA-CG-5721-01 8 142445294 142445294 T C PTP4A3 3'Flank 0.17 TCGA-CG-5721-01 8 143856711 143856711 G A LYNX1 Intron 0.13 TCGA-CG-5721-01 8 143867011 143867011 T C LY6D Missense_Mutation p.N49D 0.10 tolerated(0.13) benign(0.108) TCGA-CG-5721-01 8 143994741 143994741 C T CYP11B2 Missense_Mutation p.E361K 0.20 tolerated(0.17) possibly_damaging(0.907) TCGA-CG-5721-01 8 144804441 144804441 C T MAPK15 3'UTR 0.19 TCGA-CG-5721-01 8 144900634 144900634 A G PUF60 Missense_Mutation p.L140P 0.36 deleterious(0) probably_damaging(0.996) TCGA-CG-5721-01 8 144941378 144941378 C - EPPK1 Frame_Shift_Del p.G2015Vfs*36 0.22 TCGA-CG-5721-01 8 144945718 144945718 T C EPPK1 Silent p.T568T 0.12 TCGA-CG-5721-01 8 144994121 144994121 T C PLEC Missense_Mutation p.T3427A 0.18 possibly_damaging(0.864) TCGA-CG-5721-01 8 145005812 145005812 G A PLEC Missense_Mutation p.R869W 0.27 unknown(0) TCGA-CG-5721-01 8 145065457 145065457 G - GRINA Frame_Shift_Del p.Q26Sfs*142 0.28 TCGA-CG-5721-01 8 145066997 145066997 C T GRINA Silent p.R368R 0.23 TCGA-CG-5721-01 8 145134886 145134886 T C EXOSC4 Missense_Mutation p.L71P 0.18 deleterious(0.03) probably_damaging(0.942) TCGA-CG-5721-01 8 145139749 145139749 G A GPAA1 Missense_Mutation p.G379S 0.18 deleterious(0.03) probably_damaging(0.917) TCGA-CG-5721-01 8 145579255 145579255 T C FBXL6 Missense_Mutation p.Y519C 0.12 deleterious(0) probably_damaging(0.998) TCGA-CG-5721-01 8 145619366 145619366 C T CPSF1 Missense_Mutation p.R1274H 0.25 tolerated(0.24) benign(0.063) TCGA-CG-5721-01 8 145640188 145640188 G A SLC39A4 Silent p.A299A 0.17 TCGA-CG-5721-01 8 145655794 145655794 G A TONSL Silent p.G1312G 0.25 TCGA-CG-5721-01 8 145735779 145735779 T C MFSD3 Missense_Mutation p.L240P 0.20 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 8 145773654 145773654 C T ARHGAP39 Silent p.P272P 0.20 TCGA-CG-5721-01 8 145780968 145780968 G A ARHGAP39 Missense_Mutation p.A191V 0.22 tolerated(0.5) benign(0.008) TCGA-CG-5721-01 8 145999512 145999512 A G ZNF34 Silent p.T274T 0.22 TCGA-CG-5721-01 8 145999668 145999668 T C ZNF34 Silent p.T222T 0.13 TCGA-CG-5721-01 8 146054477 146054477 T C ZNF7 Splice_Site p.X1_splice 0.12 TCGA-CG-5721-01 8 146108158 146108158 T C ZNF250 Missense_Mutation p.Q142R 0.18 tolerated(0.26) benign(0.021) TCGA-CG-5721-01 8 1497600 1497600 C - DLGAP2 Frame_Shift_Del p.D249Tfs*31 0.23 TCGA-CG-5721-01 8 1626408 1626408 G A DLGAP2 Missense_Mutation p.V693I 0.18 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 8 17067923 17067924 - T ZDHHC2 Frame_Shift_Ins p.C296Lfs*4 0.20 TCGA-CG-5721-01 8 17407891 17407891 T C SLC7A2 Silent p.G300G 0.19 TCGA-CG-5721-01 8 17579472 17579472 T C MTUS1 Intron 0.15 TCGA-CG-5721-01 8 17611701 17611702 - CA MTUS1 Frame_Shift_Ins p.A539Vfs*8 0.19 TCGA-CG-5721-01 8 18393138 18393138 A G PSD3 3'UTR 0.22 TCGA-CG-5721-01 8 1893759 1893759 C T ARHGEF10 Missense_Mutation p.T1112M 0.23 deleterious(0) probably_damaging(0.969) TCGA-CG-5721-01 8 20107165 20107165 G - LZTS1 3'UTR 0.24 TCGA-CG-5721-01 8 21856749 21856749 A G XPO7 Missense_Mutation p.D859G 0.18 tolerated(0.26) benign(0.017) TCGA-CG-5721-01 8 21857143 21857143 A G XPO7 Missense_Mutation p.M914V 0.20 tolerated(0.3) benign(0.001) TCGA-CG-5721-01 8 21956814 21956814 C T FAM160B2 Missense_Mutation p.A365V 0.27 deleterious(0) probably_damaging(0.909) TCGA-CG-5721-01 8 22175773 22175773 A - PIWIL2 Frame_Shift_Del p.K798Sfs*5 0.18 TCGA-CG-5721-01 8 22460844 22460844 C A C8orf58 3'UTR 0.24 TCGA-CG-5721-01 8 22900649 22900649 A G TNFRSF10B Splice_Site p.X84_splice 0.24 TCGA-CG-5721-01 8 23112844 23112844 C A CHMP7 Missense_Mutation p.L186I 0.15 tolerated(0.08) possibly_damaging(0.625) TCGA-CG-5721-01 8 23174508 23174508 G A LOXL2 Silent p.C530C 0.22 TCGA-CG-5721-01 8 23429446 23429446 T C SLC25A37 3'UTR 0.29 TCGA-CG-5721-01 8 24249828 24249828 A - ADAMDEC1 Frame_Shift_Del p.K49Nfs*32 0.18 TCGA-CG-5721-01 8 25287452 25287452 T C KCTD9 Missense_Mutation p.N364S 0.19 deleterious(0) probably_damaging(0.998) TCGA-CG-5721-01 8 25364485 25364485 A G CDCA2 Missense_Mutation p.D768G 0.17 tolerated(0.21) benign(0.081) TCGA-CG-5721-01 8 27297910 27297910 A G PTK2B Missense_Mutation p.Y664C 0.17 deleterious(0) benign(0.351) TCGA-CG-5721-01 8 28980934 28980934 G A KIF13B Missense_Mutation p.A1143V 0.24 deleterious(0) possibly_damaging(0.863) TCGA-CG-5721-01 8 30407035 30407035 G A RBPMS 3'Flank 0.19 TCGA-CG-5721-01 8 30560691 30560691 T C GSR Missense_Mutation p.S187G 0.20 tolerated(0.24) benign(0) TCGA-CG-5721-01 8 30705316 30705316 T C TEX15 Silent p.E406E 0.17 TCGA-CG-5721-01 8 30889698 30889698 T C PURG Missense_Mutation p.T201A 0.14 deleterious(0.03) possibly_damaging(0.52) TCGA-CG-5721-01 8 30977830 30977830 T G WRN Silent p.G840G 0.13 TCGA-CG-5721-01 8 3263618 3263618 A G CSMD1 Missense_Mutation p.S733P 0.07 probably_damaging(0.999) TCGA-CG-5721-01 8 3265725 3265725 C T CSMD1 Silent p.T589T 0.28 TCGA-CG-5721-01 8 33369912 33369912 G A TTI2 Missense_Mutation p.R74W 0.13 deleterious(0.03) benign(0.001) TCGA-CG-5721-01 8 36766982 36766982 A C KCNU1 Missense_Mutation p.I754L 0.16 tolerated(0.48) benign(0.015) TCGA-CG-5721-01 8 37635559 37635559 A G PROSC Silent p.K255K 0.09 TCGA-CG-5721-01 8 37698297 37698297 G T GPR124 Missense_Mutation p.G893W 0.12 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 8 37699017 37699017 A G GPR124 Missense_Mutation p.Y1054C 0.16 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 8 37823761 37823761 A G ADRB3 Missense_Mutation p.V76A 0.24 deleterious(0) probably_damaging(0.998) TCGA-CG-5721-01 8 38092104 38092104 T C DDHD2 Splice_Site p.X137_splice 0.18 TCGA-CG-5721-01 8 38250157 38250157 A G LETM2 Missense_Mutation p.K2E 0.16 deleterious_low_confidence(0.03) benign(0.005) TCGA-CG-5721-01 8 39044429 39044429 A G ADAM32 Missense_Mutation p.Y306C 0.15 deleterious(0) probably_damaging(0.995) TCGA-CG-5721-01 8 39525631 39525631 C T ADAM18 Missense_Mutation p.R481C 0.19 deleterious(0) benign(0.05) TCGA-CG-5721-01 8 41467407 41467407 A G AGPAT6 Missense_Mutation p.S157G 0.19 deleterious(0.02) possibly_damaging(0.899) TCGA-CG-5721-01 8 42939922 42939922 T C FNTA Silent p.S305S 0.09 TCGA-CG-5721-01 8 43002198 43002198 T C HGSNAT Missense_Mutation p.C76R 0.22 deleterious(0) probably_damaging(0.99) TCGA-CG-5721-01 8 48701752 48701752 T C PRKDC Missense_Mutation p.N3572S 0.22 benign(0.013) TCGA-CG-5721-01 8 48732055 48732055 T C PRKDC Missense_Mutation p.D3117G 0.21 possibly_damaging(0.779) TCGA-CG-5721-01 8 48774943 48774943 T C PRKDC Silent p.K1969K 0.27 TCGA-CG-5721-01 8 48817531 48817531 T C PRKDC Silent p.T980T 0.20 TCGA-CG-5721-01 8 51306775 51306775 A G SNTG1 5'UTR 0.17 TCGA-CG-5721-01 8 52322005 52322005 A G PXDNL Missense_Mutation p.Y727H 0.14 deleterious(0.01) possibly_damaging(0.739) TCGA-CG-5721-01 8 52322094 52322094 G A PXDNL Missense_Mutation p.P697L 0.21 deleterious(0.04) benign(0.155) TCGA-CG-5721-01 8 53853400 53853400 C T NPBWR1 Silent p.D311D 0.18 TCGA-CG-5721-01 8 55372532 55372532 T C SOX17 Missense_Mutation p.Y408H 0.23 deleterious(0) probably_damaging(0.992) TCGA-CG-5721-01 8 55534685 55534685 C T RP1 Silent p.S208S 0.15 TCGA-CG-5721-01 8 56435964 56435964 C T XKR4 Silent p.C377C 0.22 TCGA-CG-5721-01 8 56652573 56652573 T C TMEM68 3'UTR 0.16 TCGA-CG-5721-01 8 56986428 56986428 T C RPS20 Intron 0.18 TCGA-CG-5721-01 8 57079754 57079754 T - PLAG1 Frame_Shift_Del p.K184Sfs*45 0.16 TCGA-CG-5721-01 8 57353979 57353979 C T PENK Missense_Mutation p.R219H 0.19 deleterious(0) probably_damaging(0.996) TCGA-CG-5721-01 8 57354072 57354072 C - PENK Frame_Shift_Del p.G188Afs*3 0.22 TCGA-CG-5721-01 8 59490615 59490615 G A SDCBP Silent p.Q142Q 0.23 TCGA-CG-5721-01 8 59502099 59502099 T C NSMAF Missense_Mutation p.D739G 0.20 deleterious(0.02) benign(0.214) TCGA-CG-5721-01 8 61654075 61654075 T C CHD7 Silent p.G28G 0.15 TCGA-CG-5721-01 8 61742985 61742985 G T CHD7 Missense_Mutation p.E1209D 0.20 probably_damaging(0.919) TCGA-CG-5721-01 8 61743072 61743072 A G CHD7 Silent p.V1238V 0.20 TCGA-CG-5721-01 8 61765392 61765392 G A CHD7 Silent p.P2036P 0.24 TCGA-CG-5721-01 8 6302320 6302320 A G MCPH1 Silent p.V359V 0.16 TCGA-CG-5721-01 8 6360765 6360765 A G ANGPT2 Missense_Mutation p.C450R 0.18 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 8 67357523 67357523 A G ADHFE1 Missense_Mutation p.T142A 0.18 deleterious(0.03) benign(0.034) TCGA-CG-5721-01 8 67479108 67479108 T C MYBL1 Intron 0.22 TCGA-CG-5721-01 8 67578033 67578033 C T VCPIP1 Silent p.K387K 0.18 TCGA-CG-5721-01 8 67970406 67970406 T C COPS5 Missense_Mutation p.H140R 0.17 deleterious(0) probably_damaging(0.982) TCGA-CG-5721-01 8 68007638 68007638 T A CSPP1 Silent p.T207T 0.28 TCGA-CG-5721-01 8 68107939 68107939 T C CSPP1 3'UTR 0.33 TCGA-CG-5721-01 8 68213490 68213490 C T ARFGEF1 Missense_Mutation p.R94H 0.19 deleterious(0) probably_damaging(0.985) TCGA-CG-5721-01 8 70488282 70488282 A G SULF1 Missense_Mutation p.T84A 0.20 deleterious(0) possibly_damaging(0.896) TCGA-CG-5721-01 8 70744455 70744455 C T SLCO5A1 Missense_Mutation p.V152I 0.18 deleterious(0) probably_damaging(0.932) TCGA-CG-5721-01 8 71071751 71071751 A G NCOA2 Silent p.H371H 0.21 TCGA-CG-5721-01 8 72755854 72755854 C T RP11-383H13.1 Missense_Mutation p.P73L 0.30 unknown(0) TCGA-CG-5721-01 8 72756075 72756075 G A MSC Silent p.N113N 0.13 TCGA-CG-5721-01 8 77763477 77763477 A - ZFHX4 Frame_Shift_Del p.K1442Nfs*10 0.29 TCGA-CG-5721-01 8 77764330 77764330 A G ZFHX4 Missense_Mutation p.T1725A 0.13 benign(0.388) TCGA-CG-5721-01 8 77767833 77767833 G A ZFHX4 Silent p.P2892P 0.18 TCGA-CG-5721-01 8 77895910 77895910 G A PEX2 Missense_Mutation p.R169C 0.18 deleterious(0.03) possibly_damaging(0.825) TCGA-CG-5721-01 8 80963804 80963804 G A TPD52 Missense_Mutation p.S155L 0.20 deleterious(0.02) benign(0.114) TCGA-CG-5721-01 8 8235521 8235521 A G SGK223 Missense_Mutation p.L133P 0.23 probably_damaging(0.96) TCGA-CG-5721-01 8 82586104 82586104 A G IMPA1 Silent p.G202G 0.16 TCGA-CG-5721-01 8 8560303 8560303 T G CLDN23 Missense_Mutation p.V132G 0.29 deleterious(0) probably_damaging(0.991) TCGA-CG-5721-01 8 85774581 85774581 C T RALYL Missense_Mutation p.P168L 0.29 deleterious(0.01) probably_damaging(0.923) TCGA-CG-5721-01 8 86035830 86035830 C T LRRCC1 Silent p.N371N 0.23 TCGA-CG-5721-01 8 8998516 8998516 A G PPP1R3B Missense_Mutation p.C216R 0.18 tolerated(0.06) probably_damaging(0.979) TCGA-CG-5721-01 8 90982768 90982768 G A NBN Silent p.S240S 0.19 TCGA-CG-5721-01 8 90990516 90990516 T C NBN Silent p.V172V 0.17 TCGA-CG-5721-01 8 92406197 92406197 A G SLC26A7 Missense_Mutation p.N622S 0.13 tolerated(0.49) benign(0.392) TCGA-CG-5721-01 8 92972632 92972632 A G RUNX1T1 Silent p.C562C 0.23 TCGA-CG-5721-01 8 94713550 94713550 C T FAM92A1 Missense_Mutation p.A42V 0.21 deleterious(0.01) benign(0.434) TCGA-CG-5721-01 8 94793924 94793924 A G TMEM67 Missense_Mutation p.I339M 0.17 tolerated(0.09) possibly_damaging(0.587) TCGA-CG-5721-01 8 95143161 95143161 A G CDH17 Silent p.L743L 0.16 TCGA-CG-5721-01 8 95161011 95161011 C T CDH17 Missense_Mutation p.G630R 0.20 tolerated(0.11) benign(0.108) TCGA-CG-5721-01 8 95503952 95503952 A G KIAA1429 Missense_Mutation p.V1665A 0.16 tolerated(0.1) benign(0.384) TCGA-CG-5721-01 8 95504890 95504890 T C KIAA1429 Missense_Mutation p.I1600V 0.22 tolerated(0.16) probably_damaging(0.99) TCGA-CG-5721-01 8 95523695 95523695 C T KIAA1429 Silent p.A1036A 0.16 TCGA-CG-5721-01 8 95690551 95690551 A G ESRP1 Missense_Mutation p.Y591C 0.18 deleterious(0.02) probably_damaging(0.928) TCGA-CG-5721-01 8 95746974 95746974 A G DPY19L4 Missense_Mutation p.N82D 0.10 deleterious(0.01) benign(0.122) TCGA-CG-5721-01 8 95942825 95942825 T C TP53INP1 Missense_Mutation p.Q202R 0.18 tolerated(0.17) benign(0.007) TCGA-CG-5721-01 8 9609199 9609199 A G TNKS Silent p.V971V 0.20 TCGA-CG-5721-01 8 9623891 9623891 A G TNKS Silent p.T1232T 0.12 TCGA-CG-5721-01 8 97307438 97307438 G A PTDSS1 Missense_Mutation p.S185N 0.17 tolerated(0.07) probably_damaging(0.999) TCGA-CG-5721-01 8 98041636 98041636 C T CPQ Missense_Mutation p.R323C 0.25 deleterious(0) probably_damaging(0.967) TCGA-CG-5721-01 8 98289418 98289418 C T TSPYL5 Missense_Mutation p.A219T 0.12 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 8 98289628 98289628 C G TSPYL5 Missense_Mutation p.A149P 0.23 deleterious(0.04) possibly_damaging(0.641) TCGA-CG-5721-01 8 99168468 99168468 A - POP1 Frame_Shift_Del p.T752Lfs*12 0.24 TCGA-CG-5721-01 9 100983263 100983263 T C TBC1D2 Missense_Mutation p.D409G 0.17 deleterious(0) possibly_damaging(0.697) TCGA-CG-5721-01 9 101748054 101748054 G A COL15A1 Missense_Mutation p.R103H 0.22 tolerated(0.15) benign(0.058) TCGA-CG-5721-01 9 103035332 103035332 A G INVS Silent p.E586E 0.17 TCGA-CG-5721-01 9 103063060 103063060 G A INVS 3'UTR 0.43 TCGA-CG-5721-01 9 103213194 103213194 T C MSANTD3 Silent p.F258F 0.21 TCGA-CG-5721-01 9 104239080 104239080 G - TMEM246 Frame_Shift_Del p.R99Gfs*5 0.11 TCGA-CG-5721-01 9 105768136 105768136 A G CYLC2 3'UTR 0.23 TCGA-CG-5721-01 9 107594877 107594877 C T ABCA1 Missense_Mutation p.R496Q 0.21 tolerated(0.77) benign(0) TCGA-CG-5721-01 9 108118594 108118594 T C SLC44A1 Missense_Mutation p.L201S 0.13 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 9 108118607 108118607 T C SLC44A1 Silent p.I205I 0.17 TCGA-CG-5721-01 9 108536265 108536265 A G TMEM38B Silent p.A260A 0.17 TCGA-CG-5721-01 9 109734375 109734375 C T ZNF462 Missense_Mutation p.P2173S 0.21 probably_damaging(0.998) TCGA-CG-5721-01 9 110250404 110250404 G A KLF4 Silent p.L91L 0.21 TCGA-CG-5721-01 9 111625200 111625200 T C ACTL7A Missense_Mutation p.Y200H 0.19 tolerated(0.16) probably_damaging(1) TCGA-CG-5721-01 9 111625720 111625720 G A ACTL7A Missense_Mutation p.R373H 0.14 deleterious(0.01) benign(0.235) TCGA-CG-5721-01 9 111663739 111663739 G A IKBKAP Silent p.C660C 0.21 TCGA-CG-5721-01 9 111681604 111681604 T C IKBKAP Missense_Mutation p.D193G 0.16 deleterious(0.03) possibly_damaging(0.788) TCGA-CG-5721-01 9 112029799 112029799 T C EPB41L4B Missense_Mutation p.K163E 0.23 deleterious(0) probably_damaging(0.998) TCGA-CG-5721-01 9 112166752 112166752 G A PTPN3 Silent p.S643S 0.22 TCGA-CG-5721-01 9 113166770 113166770 C T SVEP1 Missense_Mutation p.R3168H 0.21 benign(0.002) TCGA-CG-5721-01 9 113530124 113530124 C T MUSK Silent p.G315G 0.12 TCGA-CG-5721-01 9 113547866 113547866 A G MUSK Missense_Mutation p.H549R 0.18 tolerated(0.34) possibly_damaging(0.501) TCGA-CG-5721-01 9 114184265 114184265 T C KIAA0368 Missense_Mutation p.Y642C 0.23 deleterious(0) probably_damaging(0.997) TCGA-CG-5721-01 9 114338753 114338753 A G PTGR1 Intron 0.20 TCGA-CG-5721-01 9 114490230 114490230 G A C9orf84 Missense_Mutation p.A442V 0.14 tolerated(0.23) benign(0.05) TCGA-CG-5721-01 9 114911561 114911561 G C SUSD1 Missense_Mutation p.N112K 0.17 tolerated(0.06) benign(0.046) TCGA-CG-5721-01 9 114997101 114997101 T C PTBP3 Silent p.T327T 0.15 TCGA-CG-5721-01 9 116130558 116130558 A G BSPRY Missense_Mutation p.I193V 0.20 tolerated(0.42) benign(0.005) TCGA-CG-5721-01 9 116135767 116135767 C T HDHD3 3'UTR 0.15 TCGA-CG-5721-01 9 116136524 116136524 C T HDHD3 Silent p.G37G 0.22 TCGA-CG-5721-01 9 116303840 116303840 A G RGS3 Intron 0.18 TCGA-CG-5721-01 9 116356778 116356778 C T RGS3 Missense_Mutation p.A1050V 0.19 tolerated(0.07) benign(0.052) TCGA-CG-5721-01 9 117129918 117129918 C A AKNA Missense_Mutation p.G545W 0.19 deleterious(0) probably_damaging(0.988) TCGA-CG-5721-01 9 117186646 117186646 C T DFNB31 Missense_Mutation p.A462T 0.11 deleterious(0.03) possibly_damaging(0.899) TCGA-CG-5721-01 9 117266884 117266884 G A DFNB31 Silent p.H66H 0.11 TCGA-CG-5721-01 9 117563 117563 T C FOXD4 Missense_Mutation p.D186G 0.10 deleterious(0.01) possibly_damaging(0.888) TCGA-CG-5721-01 9 117826299 117826299 T C TNC Missense_Mutation p.D1179G 0.11 deleterious(0.01) possibly_damaging(0.626) TCGA-CG-5721-01 9 117853152 117853152 A G TNC Missense_Mutation p.V49A 0.14 deleterious(0) probably_damaging(0.928) TCGA-CG-5721-01 9 118974132 118974132 T C PAPPA Silent p.G613G 0.15 TCGA-CG-5721-01 9 119204810 119204810 T C ASTN2 Missense_Mutation p.T1123A 0.20 deleterious(0.02) unknown(0) TCGA-CG-5721-01 9 122011371 122011371 G A BRINP1 Silent p.R92R 0.15 TCGA-CG-5721-01 9 123737152 123737152 G A C5 Missense_Mutation p.R1308C 0.21 tolerated(0.05) benign(0.39) TCGA-CG-5721-01 9 124543794 124543794 G A DAB2IP Silent p.A1094A 0.19 TCGA-CG-5721-01 9 124751996 124751996 T C TTLL11 Silent p.K339K 0.18 TCGA-CG-5721-01 9 124801573 124801573 G A TTLL11 Silent p.S269S 0.19 TCGA-CG-5721-01 9 124914655 124914655 C T NDUFA8 Silent p.A28A 0.28 TCGA-CG-5721-01 9 125033202 125033202 T C MRRF Missense_Mutation p.V11A 0.18 tolerated(0.1) benign(0.003) TCGA-CG-5721-01 9 125673881 125673881 A G ZBTB6 Silent p.S157S 0.17 TCGA-CG-5721-01 9 125719300 125719300 A T RABGAP1 5'UTR 0.15 TCGA-CG-5721-01 9 126133465 126133465 G A CRB2 Missense_Mutation p.A682T 0.19 tolerated(0.31) possibly_damaging(0.499) TCGA-CG-5721-01 9 126212994 126212994 A C DENND1A Missense_Mutation p.V445G 0.15 deleterious(0) probably_damaging(0.995) TCGA-CG-5721-01 9 127245230 127245230 T C NR5A1 Missense_Mutation p.N398S 0.25 tolerated(0.07) benign(0.05) TCGA-CG-5721-01 9 127549284 127549284 A G OLFML2A Missense_Mutation p.T41A 0.16 tolerated(0.14) possibly_damaging(0.622) TCGA-CG-5721-01 9 127549392 127549392 G T OLFML2A Missense_Mutation p.V77L 0.11 deleterious(0) probably_damaging(0.97) TCGA-CG-5721-01 9 127996349 127996349 T C RABEPK 3'Flank 0.23 TCGA-CG-5721-01 9 129596308 129596308 A G ZBTB43 3'UTR 0.17 TCGA-CG-5721-01 9 129870558 129870558 G A ANGPTL2 Silent p.N151N 0.17 TCGA-CG-5721-01 9 130207103 130207103 A G ZNF79 Missense_Mutation p.N375S 0.27 tolerated(1) benign(0.014) TCGA-CG-5721-01 9 130416038 130416038 C T STXBP1 Silent p.C44C 0.20 TCGA-CG-5721-01 9 130476402 130476402 G T PTRH1 Missense_Mutation p.Q208K 0.26 tolerated(0.07) benign(0.11) TCGA-CG-5721-01 9 130687442 130687442 T C PIP5KL1 Silent p.Q287Q 0.10 TCGA-CG-5721-01 9 130868031 130868031 C T SLC25A25 Silent p.N257N 0.18 TCGA-CG-5721-01 9 130941627 130941627 T A CIZ1 Missense_Mutation p.M287L 0.21 tolerated(0.2) benign(0.002) TCGA-CG-5721-01 9 131021357 131021357 C T GOLGA2 Missense_Mutation p.R674H 0.16 tolerated(0.38) benign(0.031) TCGA-CG-5721-01 9 131087459 131087459 C T COQ4 Silent p.R80R 0.09 TCGA-CG-5721-01 9 131469074 131469074 G A PKN3 Missense_Mutation p.S165N 0.23 tolerated(0.16) benign(0.217) TCGA-CG-5721-01 9 131504980 131504980 G - ZER1 Frame_Shift_Del p.E469Rfs*42 0.20 TCGA-CG-5721-01 9 131584738 131584738 T C ENDOG Missense_Mutation p.V248A 0.30 deleterious(0) probably_damaging(0.95) TCGA-CG-5721-01 9 131703842 131703842 G A PHYHD1 Missense_Mutation p.R267Q 0.20 tolerated_low_confidence(0.58) benign(0) TCGA-CG-5721-01 9 131709341 131709341 A G DOLK Missense_Mutation p.L81P 0.23 deleterious(0) probably_damaging(0.952) TCGA-CG-5721-01 9 131767594 131767594 G A NUP188 Missense_Mutation p.D1508N 0.20 tolerated(0.05) benign(0.069) TCGA-CG-5721-01 9 131832578 131832578 A G FAM73B Missense_Mutation p.Y543C 0.13 deleterious(0) probably_damaging(0.99) TCGA-CG-5721-01 9 131857756 131857756 C T CRAT Missense_Mutation p.A601T 0.18 tolerated(0.39) benign(0.006) TCGA-CG-5721-01 9 132084350 132084350 T C C9orf106 RNA 0.38 TCGA-CG-5721-01 9 132620767 132620767 G A USP20 Missense_Mutation p.V74M 0.23 tolerated(0.16) possibly_damaging(0.53) TCGA-CG-5721-01 9 132687349 132687349 G A FNBP1 Missense_Mutation p.R293C 0.21 deleterious(0) benign(0.266) TCGA-CG-5721-01 9 133342148 133342148 C T ASS1 Missense_Mutation p.R153W 0.09 deleterious(0.05) benign(0.122) TCGA-CG-5721-01 9 133491810 133491810 T C FUBP3 Missense_Mutation p.I158T 0.19 tolerated(0.73) benign(0) TCGA-CG-5721-01 9 134003832 134003834 ATT - NUP214 In_Frame_Del p.I120del 0.20 TCGA-CG-5721-01 9 134073745 134073745 T C NUP214 Missense_Mutation p.S1622P 0.26 possibly_damaging(0.82) TCGA-CG-5721-01 9 134379614 134379614 A T POMT1 Silent p.G3G 0.16 TCGA-CG-5721-01 9 134398559 134398559 T C POMT1 3'UTR 0.24 TCGA-CG-5721-01 9 134405877 134405877 A T UCK1 Missense_Mutation p.H93Q 0.18 deleterious(0) probably_damaging(0.996) TCGA-CG-5721-01 9 134612879 134612879 G A RAPGEF1 5'UTR 0.11 TCGA-CG-5721-01 9 135042324 135042324 T C NTNG2 Missense_Mutation p.F36L 0.18 deleterious(0.04) benign(0.063) TCGA-CG-5721-01 9 135152521 135152521 T C SETX Silent p.R2287R 0.16 TCGA-CG-5721-01 9 135742312 135742312 G A AK8 Silent p.P66P 0.25 TCGA-CG-5721-01 9 135771466 135771466 G A TSC1 3'UTR 0.19 TCGA-CG-5721-01 9 135939927 135939927 A G CEL Missense_Mutation p.H71R 0.16 tolerated(0.08) possibly_damaging(0.534) TCGA-CG-5721-01 9 135945877 135945877 C T CEL Missense_Mutation p.S442F 0.16 deleterious(0.04) probably_damaging(0.999) TCGA-CG-5721-01 9 135985812 135985812 G A RALGDS Missense_Mutation p.T120M 0.23 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 9 136272035 136272035 T G REXO4 3'UTR 0.08 TCGA-CG-5721-01 9 136279819 136279819 T C REXO4 Missense_Mutation p.K180E 0.21 tolerated(0.06) possibly_damaging(0.742) TCGA-CG-5721-01 9 136304555 136304555 T C ADAMTS13 Missense_Mutation p.F592L 0.18 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 9 136384051 136384051 T C TMEM8C Missense_Mutation p.Y115C 0.15 deleterious(0.02) probably_damaging(0.979) TCGA-CG-5721-01 9 136641200 136641200 C T VAV2 Silent p.P656P 0.23 TCGA-CG-5721-01 9 136674187 136674187 T C VAV2 Missense_Mutation p.Y214C 0.14 deleterious(0.05) benign(0.169) TCGA-CG-5721-01 9 136917441 136917441 T C BRD3 Missense_Mutation p.Y113C 0.22 deleterious(0) possibly_damaging(0.496) TCGA-CG-5721-01 9 138376588 138376588 T C PPP1R26 Missense_Mutation p.C78R 0.14 tolerated(0.2) probably_damaging(0.919) TCGA-CG-5721-01 9 138713266 138713267 GA - CAMSAP1 Frame_Shift_Del p.P1081Hfs*40 0.27 TCGA-CG-5721-01 9 139092558 139092558 G A LHX3 Missense_Mutation p.R46C 0.18 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 9 139313291 139313291 T C PMPCA Missense_Mutation p.M374T 0.29 deleterious(0) possibly_damaging(0.875) TCGA-CG-5721-01 9 139370019 139370019 C T SEC16A Silent p.T683T 0.30 TCGA-CG-5721-01 9 139370931 139370931 T C SEC16A Silent p.G379G 0.14 TCGA-CG-5721-01 9 139752922 139752922 C A MAMDC4 Missense_Mutation p.S915R 0.21 tolerated(0.11) probably_damaging(0.999) TCGA-CG-5721-01 9 139752975 139752975 A G MAMDC4 Missense_Mutation p.D933G 0.20 deleterious(0.03) probably_damaging(0.999) TCGA-CG-5721-01 9 139814796 139814796 C T TRAF2 Silent p.H263H 0.17 TCGA-CG-5721-01 9 139911421 139911421 G A ABCA2 Silent p.D903D 0.18 TCGA-CG-5721-01 9 139912270 139912270 A G ABCA2 Missense_Mutation p.I727T 0.14 deleterious(0) possibly_damaging(0.598) TCGA-CG-5721-01 9 139972986 139972986 C A UAP1L1 Missense_Mutation p.P176H 0.24 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 9 140086680 140086680 C - TPRN Intron 0.18 TCGA-CG-5721-01 9 140110800 140110800 C T NDOR1 Missense_Mutation p.P585S 0.20 tolerated(0.71) benign(0.003) TCGA-CG-5721-01 9 140136267 140136267 A G TUBB4B Missense_Mutation p.Y51C 0.30 deleterious_low_confidence(0.02) probably_damaging(0.973) TCGA-CG-5721-01 9 140328738 140328738 G A NOXA1 Missense_Mutation p.V460M 0.19 deleterious(0.01) probably_damaging(0.993) TCGA-CG-5721-01 9 140329696 140329696 A C ENTPD8 Missense_Mutation p.F419C 0.12 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 9 140508787 140508787 G A ARRDC1 Missense_Mutation p.V219I 0.18 tolerated(0.14) benign(0.094) TCGA-CG-5721-01 9 140685319 140685319 C T EHMT1 Missense_Mutation p.T801I 0.23 tolerated(0.27) possibly_damaging(0.794) TCGA-CG-5721-01 9 140968057 140968057 G A CACNA1B Splice_Site p.X1597_splice 0.19 TCGA-CG-5721-01 9 141016370 141016370 T C CACNA1B Silent p.G2313G 0.18 TCGA-CG-5721-01 9 14746967 14746967 T C FREM1 Missense_Mutation p.Y2031C 0.16 deleterious(0.01) possibly_damaging(0.827) TCGA-CG-5721-01 9 15777690 15777690 T C CCDC171 Missense_Mutation p.C922R 0.30 tolerated(0.16) benign(0.001) TCGA-CG-5721-01 9 19083042 19083042 C A HAUS6 Splice_Site p.X234_splice 0.30 TCGA-CG-5721-01 9 19516122 19516122 G A SLC24A2 3'UTR 0.20 TCGA-CG-5721-01 9 20923715 20923715 T C FOCAD Missense_Mutation p.V970A 0.16 tolerated(0.88) benign(0.001) TCGA-CG-5721-01 9 21077708 21077708 T G IFNB1 Missense_Mutation p.K54T 0.21 tolerated(0.12) benign(0.123) TCGA-CG-5721-01 9 21227977 21227977 A G IFNA17 Missense_Mutation p.F66L 0.17 tolerated(0.45) benign(0.058) TCGA-CG-5721-01 9 21304924 21304924 T C IFNA5 Missense_Mutation p.E111G 0.18 tolerated(1) benign(0.004) TCGA-CG-5721-01 9 21441040 21441040 A G IFNA1 Silent p.S178S 0.14 TCGA-CG-5721-01 9 21441041 21441041 A G IFNA1 Missense_Mutation p.T179A 0.14 tolerated(0.51) benign(0.006) TCGA-CG-5721-01 9 21481472 21481472 T - IFNE Frame_Shift_Del p.G75Dfs*43 0.19 TCGA-CG-5721-01 9 2161726 2161726 T C SMARCA2 Missense_Mutation p.V1341A 0.15 benign(0.153) TCGA-CG-5721-01 9 26920381 26920381 A G PLAA Silent p.G347G 0.23 TCGA-CG-5721-01 9 26998038 26998038 T C LRRC19 Missense_Mutation p.N95D 0.17 deleterious(0.04) benign(0.034) TCGA-CG-5721-01 9 27009025 27009025 A G IFT74 Missense_Mutation p.K199E 0.17 tolerated(0.39) benign(0.002) TCGA-CG-5721-01 9 32457015 32457015 A G DDX58 3'UTR 0.12 TCGA-CG-5721-01 9 32485235 32485235 T C DDX58 Missense_Mutation p.Y473C 0.21 tolerated(0.24) benign(0) TCGA-CG-5721-01 9 3262957 3262957 C T RFX3 Missense_Mutation p.R528H 0.17 deleterious(0) probably_damaging(0.991) TCGA-CG-5721-01 9 32987768 32987768 A G APTX Missense_Mutation p.V86A 0.17 tolerated(0.62) benign(0.107) TCGA-CG-5721-01 9 33038770 33038770 A G DNAJA1 Missense_Mutation p.T355A 0.14 tolerated(0.47) benign(0.001) TCGA-CG-5721-01 9 33053213 33053213 C T SMU1 Missense_Mutation p.V400I 0.20 tolerated(0.38) benign(0.066) TCGA-CG-5721-01 9 33120581 33120581 A G B4GALT1 Silent p.R224R 0.15 TCGA-CG-5721-01 9 332402 332402 A - DOCK8 Frame_Shift_Del p.V352Sfs*32 0.19 TCGA-CG-5721-01 9 33386157 33386157 A G AQP7 Missense_Mutation p.V148A 0.11 deleterious(0.02) probably_damaging(0.955) TCGA-CG-5721-01 9 33948577 33948577 G A UBAP2 Silent p.V355V 0.23 TCGA-CG-5721-01 9 34401028 34401028 G - FAM219A Frame_Shift_Del p.K165Sfs*3 0.29 TCGA-CG-5721-01 9 34611198 34611198 A G RPP25L Silent p.D32D 0.15 TCGA-CG-5721-01 9 34622508 34622508 T C ARID3C Missense_Mutation p.N295S 0.19 tolerated(0.63) benign(0) TCGA-CG-5721-01 9 34635783 34635783 T C SIGMAR1 Missense_Mutation p.Y173C 0.24 deleterious(0) probably_damaging(0.997) TCGA-CG-5721-01 9 35091856 35091856 C T PIGO Silent p.A676A 0.15 TCGA-CG-5721-01 9 35100102 35100102 C A STOML2 Missense_Mutation p.G334V 0.19 tolerated(0.07) benign(0.05) TCGA-CG-5721-01 9 35378381 35378381 A G UNC13B Missense_Mutation p.T636A 0.20 deleterious(0) probably_damaging(0.998) TCGA-CG-5721-01 9 35403993 35403993 T A UNC13B Missense_Mutation p.L1580H 0.13 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 9 35609379 35609379 C T TESK1 Silent p.S507S 0.12 TCGA-CG-5721-01 9 35707150 35707150 C T TLN1 Missense_Mutation p.R1625Q 0.19 tolerated(0.05) benign(0.01) TCGA-CG-5721-01 9 35752993 35752993 C T MSMP 3'UTR 0.41 TCGA-CG-5721-01 9 35852855 35852855 T C TMEM8B Missense_Mutation p.V284A 0.18 tolerated(1) benign(0.191) TCGA-CG-5721-01 9 37541449 37541449 T C FBXO10 Missense_Mutation p.E106G 0.16 tolerated(0.28) benign(0.001) TCGA-CG-5721-01 9 37745884 37745884 T C FRMPD1 Silent p.S1285S 0.20 TCGA-CG-5721-01 9 37768227 37768227 T C TRMT10B Splice_Site p.X191_splice 0.19 TCGA-CG-5721-01 9 382641 382641 C A DOCK8 Missense_Mutation p.H912N 0.18 tolerated(0.32) benign(0.131) TCGA-CG-5721-01 9 38397185 38397185 G A ALDH1B1 Silent p.T480T 0.27 TCGA-CG-5721-01 9 40774856 40774856 T C ZNF658 Missense_Mutation p.D140G 0.17 deleterious(0.02) possibly_damaging(0.632) TCGA-CG-5721-01 9 4118618 4118618 C T GLIS3 Missense_Mutation p.R287Q 0.23 tolerated(0.16) probably_damaging(0.99) TCGA-CG-5721-01 9 43627524 43627524 T C SPATA31A6 Missense_Mutation p.N388S 0.19 tolerated(0.07) benign(0.069) TCGA-CG-5721-01 9 5811260 5811260 T G ERMP1 Missense_Mutation p.K393T 0.19 tolerated(0.07) benign(0.006) TCGA-CG-5721-01 9 5929149 5929149 T C KIAA2026 Missense_Mutation p.Y798C 0.17 deleterious(0.02) probably_damaging(0.997) TCGA-CG-5721-01 9 5968410 5968410 T C KIAA2026 Silent p.P607P 0.18 TCGA-CG-5721-01 9 5988525 5988525 G A KIAA2026 Missense_Mutation p.T205M 0.16 deleterious(0) probably_damaging(0.975) TCGA-CG-5721-01 9 6012876 6012876 A G RANBP6 Missense_Mutation p.V911A 0.20 tolerated(0.35) benign(0) TCGA-CG-5721-01 9 6486850 6486850 T C UHRF2 Silent p.H474H 0.20 TCGA-CG-5721-01 9 6536071 6536071 G A GLDC Missense_Mutation p.P944L 0.22 tolerated(0.32) possibly_damaging(0.659) TCGA-CG-5721-01 9 6984274 6984274 T G KDM4C Missense_Mutation p.D408E 0.25 tolerated(0.68) benign(0.002) TCGA-CG-5721-01 9 71628684 71628684 A G PRKACG Missense_Mutation p.F109L 0.19 tolerated(0.63) benign(0.032) TCGA-CG-5721-01 9 71628958 71628958 G A PRKACG Silent p.N17N 0.32 TCGA-CG-5721-01 9 72501762 72501762 T A C9orf135 Nonsense_Mutation p.L153* 0.19 TCGA-CG-5721-01 9 73151634 73151634 T C TRPM3 Silent p.R1453R 0.09 TCGA-CG-5721-01 9 73213424 73213424 C T TRPM3 Missense_Mutation p.V975M 0.24 deleterious(0) possibly_damaging(0.896) TCGA-CG-5721-01 9 74587771 74587771 A G C9orf85 3'UTR 0.23 TCGA-CG-5721-01 9 75524662 75524662 A G ALDH1A1 Missense_Mutation p.V405A 0.17 deleterious(0) probably_damaging(0.926) TCGA-CG-5721-01 9 77257488 77257488 A G RORB Missense_Mutation p.N132D 0.13 tolerated(0.86) benign(0) TCGA-CG-5721-01 9 77435270 77435270 A G TRPM6 Missense_Mutation p.S362P 0.15 deleterious(0) possibly_damaging(0.866) TCGA-CG-5721-01 9 77755814 77755814 C T OSTF1 Silent p.A184A 0.16 TCGA-CG-5721-01 9 78749046 78749046 C T PCSK5 Silent p.D410D 0.11 TCGA-CG-5721-01 9 78947412 78947412 C T PCSK5 Missense_Mutation p.A1518V 0.20 tolerated(0.43) benign(0.002) TCGA-CG-5721-01 9 78953321 78953321 C T PCSK5 Nonsense_Mutation p.Q1615* 0.19 TCGA-CG-5721-01 9 78973828 78973828 A G PCSK5 Missense_Mutation p.Y1858C 0.14 deleterious(0) unknown(0) TCGA-CG-5721-01 9 79321580 79321580 T C PRUNE2 Silent p.V1870V 0.22 TCGA-CG-5721-01 9 79634951 79634951 G A FOXB2 Silent p.A127A 0.31 TCGA-CG-5721-01 9 79840849 79840849 A - VPS13A Frame_Shift_Del p.T392Pfs*7 0.14 TCGA-CG-5721-01 9 79936099 79936099 A - VPS13A Frame_Shift_Del p.M1812Wfs*30 0.18 TCGA-CG-5721-01 9 79952387 79952387 A G VPS13A Missense_Mutation p.I2104M 0.23 tolerated(0.1) possibly_damaging(0.522) TCGA-CG-5721-01 9 80944071 80944071 T C PSAT1 3'UTR 0.22 TCGA-CG-5721-01 9 82308557 82308557 A G TLE4 Intron 0.22 TCGA-CG-5721-01 9 8500960 8500960 A G PTPRD Missense_Mutation p.I641T 0.17 tolerated(0.52) unknown(0) TCGA-CG-5721-01 9 8518133 8518133 C T PTPRD Missense_Mutation p.A420T 0.21 tolerated(0.06) possibly_damaging(0.781) TCGA-CG-5721-01 9 8521543 8521543 C T PTPRD Missense_Mutation p.R232H 0.07 deleterious(0) probably_damaging(0.994) TCGA-CG-5721-01 9 85925432 85925432 T G FRMD3 Missense_Mutation p.K269Q 0.17 deleterious(0) probably_damaging(0.984) TCGA-CG-5721-01 9 86292640 86292640 A G UBQLN1 Splice_Site p.X369_splice 0.10 TCGA-CG-5721-01 9 86357453 86357453 T C GKAP1 Missense_Mutation p.T323A 0.15 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 9 88236136 88236136 A G AGTPBP1 Missense_Mutation p.Y654H 0.21 deleterious(0) probably_damaging(0.997) TCGA-CG-5721-01 9 90388469 90388469 C T CTSL3P RNA 0.16 TCGA-CG-5721-01 9 916875 916875 A G DMRT1 Missense_Mutation p.D312G 0.19 deleterious(0) possibly_damaging(0.653) TCGA-CG-5721-01 9 94487006 94487006 G - ROR2 Frame_Shift_Del p.D591Tfs*32 0.28 TCGA-CG-5721-01 9 94493292 94493292 C - ROR2 Frame_Shift_Del p.H362Tfs*83 0.21 TCGA-CG-5721-01 9 95050089 95050089 T A IARS Missense_Mutation p.Y127F 0.22 deleterious(0.04) probably_damaging(0.986) TCGA-CG-5721-01 9 95165630 95165630 T C OGN Silent p.A20A 0.19 TCGA-CG-5721-01 9 95378327 95378327 C T IPPK Silent p.R421R 0.16 TCGA-CG-5721-01 9 95432206 95432206 A G IPPK Missense_Mutation p.V22A 0.14 tolerated(0.12) benign(0.132) TCGA-CG-5721-01 9 95947742 95947742 G C WNK2 Missense_Mutation p.E177D 0.36 unknown(0) TCGA-CG-5721-01 9 95947835 95947835 G A WNK2 Silent p.T208T 0.25 TCGA-CG-5721-01 9 96062342 96062342 T G WNK2 Missense_Mutation p.V2079G 0.16 unknown(0) TCGA-CG-5721-01 9 96323469 96323469 G A FAM120A Missense_Mutation p.R962Q 0.20 tolerated(0.21) probably_damaging(0.988) TCGA-CG-5721-01 9 97887409 97887409 T C FANCC Missense_Mutation p.T319A 0.23 deleterious(0) possibly_damaging(0.463) TCGA-CG-5721-01 9 98231280 98231280 T C PTCH1 Missense_Mutation p.Y668C 0.15 tolerated(0.44) benign(0.004) TCGA-CG-5721-01 9 98683534 98683534 A G ERCC6L2 Missense_Mutation p.I423M 0.18 deleterious(0.03) benign(0.091) TCGA-CG-5721-01 9 98740497 98740497 G T ERCC6L2 Missense_Mutation p.K136N 0.09 deleterious(0) possibly_damaging(0.787) TCGA-CG-5721-01 X 100538467 100538467 T - TAF7L Frame_Shift_Del p.T170Pfs*35 0.40 TCGA-CG-5721-01 X 100653514 100653514 T C GLA Silent p.V281V 0.30 TCGA-CG-5721-01 X 101382092 101382092 G T TCEAL2 Missense_Mutation p.G97V 0.37 tolerated(0.09) probably_damaging(0.988) TCGA-CG-5721-01 X 10181871 10181871 T A CLCN4 Missense_Mutation p.I576N 0.19 deleterious(0) probably_damaging(0.988) TCGA-CG-5721-01 X 101857592 101857592 T C ARMCX5 Missense_Mutation p.W175R 0.04 deleterious(0.03) probably_damaging(0.998) TCGA-CG-5721-01 X 10188763 10188763 C - CLCN4 Frame_Shift_Del p.E682Sfs*10 0.29 TCGA-CG-5721-01 X 102333485 102333485 A G NXF3 Intron 0.17 TCGA-CG-5721-01 X 102339744 102339744 A G NXF3 Silent p.S32S 0.22 TCGA-CG-5721-01 X 102754895 102754895 T G RAB40A Missense_Mutation p.S264R 0.54 tolerated_low_confidence(0.06) benign(0.033) TCGA-CG-5721-01 X 102864629 102864629 A T TCEAL3 3'UTR 0.24 TCGA-CG-5721-01 X 105280958 105280958 T C SERPINA7 Missense_Mutation p.H31R 0.25 tolerated(0.43) benign(0.235) TCGA-CG-5721-01 X 10534991 10534991 T C MID1 Silent p.K199K 0.25 TCGA-CG-5721-01 X 106846082 106846082 C A FRMPD3 Missense_Mutation p.L1638M 0.62 deleterious(0.01) probably_damaging(0.999) TCGA-CG-5721-01 X 107310235 107310235 G A VSIG1 Missense_Mutation p.D131N 0.54 tolerated(1) benign(0.006) TCGA-CG-5721-01 X 107374535 107374535 G A ATG4A Missense_Mutation p.R80H 0.05 deleterious(0) probably_damaging(0.984) TCGA-CG-5721-01 X 107408254 107408254 C T COL4A6 Missense_Mutation p.A1276T 0.75 benign(0.13) TCGA-CG-5721-01 X 108785800 108785800 A G NXT2 Silent p.G159G 0.23 TCGA-CG-5721-01 X 114540914 114540914 C T LUZP4 Nonsense_Mutation p.R163* 0.62 TCGA-CG-5721-01 X 115594128 115594128 T C CT83 5'UTR 0.70 TCGA-CG-5721-01 X 117527127 117527127 C G WDR44 Missense_Mutation p.T240S 0.09 tolerated_low_confidence(0.74) benign(0.004) TCGA-CG-5721-01 X 117770340 117770340 A G DOCK11 Silent p.S1306S 0.16 TCGA-CG-5721-01 X 11777824 11777824 A - MSL3 Intron 0.34 TCGA-CG-5721-01 X 11778586 11778586 C T MSL3 Missense_Mutation p.R84C 0.56 tolerated(0.06) benign(0.002) TCGA-CG-5721-01 X 117925753 117925753 A G IL13RA1 Missense_Mutation p.K407R 0.29 tolerated(0.16) probably_damaging(0.987) TCGA-CG-5721-01 X 118220920 118220920 G T KIAA1210 Missense_Mutation p.P1425T 0.55 tolerated(0.29) possibly_damaging(0.819) TCGA-CG-5721-01 X 118374362 118374362 A G PGRMC1 Missense_Mutation p.D140G 0.60 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 X 118979166 118979166 T C UPF3B Missense_Mutation p.D155G 0.26 deleterious(0.03) benign(0.058) TCGA-CG-5721-01 X 119007297 119007297 T C NDUFA1 Missense_Mutation p.W45R 0.22 tolerated(0.09) probably_damaging(0.986) TCGA-CG-5721-01 X 119249597 119249597 C T RHOXF1 Missense_Mutation p.G59D 0.23 tolerated(1) benign(0.066) TCGA-CG-5721-01 X 122318343 122318343 T C GRIA3 5'UTR 0.15 TCGA-CG-5721-01 X 122599637 122599637 A G GRIA3 Missense_Mutation p.K813E 0.24 tolerated(0.19) probably_damaging(0.999) TCGA-CG-5721-01 X 122766892 122766892 C A THOC2 Splice_Site p.X713_splice 0.16 TCGA-CG-5721-01 X 123504039 123504039 T C SH2D1A Missense_Mutation p.V72A 0.54 tolerated(0.2) probably_damaging(0.998) TCGA-CG-5721-01 X 123517933 123517933 T C TENM1 Missense_Mutation p.N2283S 0.55 tolerated(0.67) benign(0.017) TCGA-CG-5721-01 X 123657295 123657295 T C TENM1 Silent p.P984P 0.52 TCGA-CG-5721-01 X 12837742 12837742 C T PRPS2 Missense_Mutation p.A219V 0.27 tolerated(0.12) benign(0.222) TCGA-CG-5721-01 X 129053461 129053461 A G UTP14A Missense_Mutation p.K250E 0.19 deleterious(0) probably_damaging(0.98) TCGA-CG-5721-01 X 129189907 129189907 G A BCORL1 Silent p.P1644P 0.58 TCGA-CG-5721-01 X 129215379 129215379 A G ELF4 5'UTR 0.56 TCGA-CG-5721-01 X 129546413 129546413 C T RBMX2 Missense_Mutation p.S187L 0.65 deleterious(0.04) benign(0.013) TCGA-CG-5721-01 X 131348328 131348328 A T RAP2C Nonsense_Mutation p.C140* 0.59 TCGA-CG-5721-01 X 1321300 1321300 T C CRLF2 Missense_Mutation p.Y152C 0.28 deleterious(0.02) probably_damaging(0.969) TCGA-CG-5721-01 X 133379180 133379180 A G CCDC160 Missense_Mutation p.N117S 0.39 tolerated(0.44) benign(0) TCGA-CG-5721-01 X 134421687 134421688 - T ZNF75D Frame_Shift_Ins p.T306Dfs*17 0.49 TCGA-CG-5721-01 X 135047055 135047055 T - MMGT1 3'UTR 0.53 TCGA-CG-5721-01 X 138878614 138878614 T C ATP11C Missense_Mutation p.T345A 0.61 tolerated(0.07) probably_damaging(0.999) TCGA-CG-5721-01 X 14026810 14026810 T C GEMIN8 3'UTR 0.67 TCGA-CG-5721-01 X 14027269 14027269 A T GEMIN8 Missense_Mutation p.D164E 0.25 tolerated(1) benign(0.05) TCGA-CG-5721-01 X 140983059 140983059 G A MAGEC3 Nonsense_Mutation p.W305* 0.57 TCGA-CG-5721-01 X 140995386 140995386 G - MAGEC1 Frame_Shift_Del p.E734Rfs*11 0.41 TCGA-CG-5721-01 X 140996660 140996660 G T MAGEC1 3'UTR 0.68 TCGA-CG-5721-01 X 144903977 144903977 A G SLITRK2 Missense_Mutation p.T12A 0.12 tolerated(0.7) benign(0.005) TCGA-CG-5721-01 X 14548222 14548222 T - GLRA2 Frame_Shift_Del p.F16Sfs*2 0.28 TCGA-CG-5721-01 X 146307346 146307346 A T MIR513A2 RNA 0.17 TCGA-CG-5721-01 X 147106430 147106430 G T FMR1NB Silent p.T226T 0.55 TCGA-CG-5721-01 X 148037624 148037624 A G AFF2 Silent p.E683E 0.23 TCGA-CG-5721-01 X 148568676 148568676 A G IDS Intron 0.31 TCGA-CG-5721-01 X 14883327 14883327 A G FANCB Silent p.N102N 0.26 TCGA-CG-5721-01 X 150844591 150844591 A G PASD1 Silent p.Q766Q 0.25 TCGA-CG-5721-01 X 150869406 150869406 G A PRRG3 Silent p.A199A 0.52 TCGA-CG-5721-01 X 150869501 150869501 A G PRRG3 Missense_Mutation p.K231R 0.22 tolerated_low_confidence(0.1) probably_damaging(0.986) TCGA-CG-5721-01 X 151806730 151806730 A G GABRQ Missense_Mutation p.Y25C 0.38 deleterious_low_confidence(0.04) benign(0.26) TCGA-CG-5721-01 X 151821062 151821062 C - GABRQ Frame_Shift_Del p.L408Wfs*10 0.46 TCGA-CG-5721-01 X 152613253 152613253 C T ZNF275 3'UTR 0.60 TCGA-CG-5721-01 X 152813387 152813387 C T ATP2B3 Silent p.N351N 0.24 TCGA-CG-5721-01 X 153043053 153043053 C A PLXNB3 Missense_Mutation p.A1747D 0.21 deleterious(0) probably_damaging(0.976) TCGA-CG-5721-01 X 153095849 153095849 G A PDZD4 5'UTR 0.50 TCGA-CG-5721-01 X 15311390 15311390 C T ASB11 Missense_Mutation p.S141N 0.60 tolerated(0.06) possibly_damaging(0.752) TCGA-CG-5721-01 X 153225269 153225269 G A HCFC1 Silent p.T476T 0.44 TCGA-CG-5721-01 X 153557991 153557991 A G TKTL1 Missense_Mutation p.S582G 0.28 tolerated(0.07) benign(0.097) TCGA-CG-5721-01 X 153578115 153578115 A G FLNA Missense_Mutation p.V2485A 0.30 deleterious(0) possibly_damaging(0.559) TCGA-CG-5721-01 X 153588878 153588878 G A FLNA Silent p.A1095A 0.70 TCGA-CG-5721-01 X 153593012 153593012 T C FLNA Missense_Mutation p.Y635C 0.29 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 X 153594737 153594737 G A FLNA Silent p.P389P 0.30 TCGA-CG-5721-01 X 153674214 153674214 G A FAM50A Missense_Mutation p.R84Q 0.25 deleterious(0.04) benign(0.14) TCGA-CG-5721-01 X 153688930 153688930 A G PLXNA3 Missense_Mutation p.H136R 0.22 deleterious(0.04) benign(0.004) TCGA-CG-5721-01 X 153906491 153906491 T C GAB3 Silent p.K576K 0.31 TCGA-CG-5721-01 X 154007457 154007457 A G MPP1 Missense_Mutation p.Y466H 0.36 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 X 154113626 154113626 T - H2AFB1 Frame_Shift_Del p.F102Sfs*17 0.28 TCGA-CG-5721-01 X 154130394 154130394 C T F8 Missense_Mutation p.R2016Q 0.23 tolerated(0.05) probably_damaging(1) TCGA-CG-5721-01 X 154158195 154158195 T C F8 Silent p.K1290K 0.26 TCGA-CG-5721-01 X 154292397 154292397 T C MTCP1 3'UTR 0.23 TCGA-CG-5721-01 X 154741369 154741369 C T TMLHE Silent p.R241R 0.23 TCGA-CG-5721-01 X 155003541 155003541 C A SPRY3 Missense_Mutation p.A3D 0.06 tolerated_low_confidence(0.38) benign(0.001) TCGA-CG-5721-01 X 15555366 15555366 T C BMX Silent p.V444V 0.24 TCGA-CG-5721-01 X 16775393 16775393 G A SYAP1 Missense_Mutation p.V298M 0.34 tolerated(0.07) possibly_damaging(0.733) TCGA-CG-5721-01 X 16881118 16881118 A G RBBP7 Silent p.D133D 0.04 TCGA-CG-5721-01 X 17744010 17744010 A G NHS Missense_Mutation p.D574G 0.23 deleterious(0.01) possibly_damaging(0.82) TCGA-CG-5721-01 X 17771410 17771410 G A SCML1 Silent p.T296T 0.05 TCGA-CG-5721-01 X 17819375 17819375 C T RAI2 Missense_Mutation p.M252I 0.57 tolerated(0.87) unknown(0) TCGA-CG-5721-01 X 19020962 19020962 A G GPR64 Splice_Site p.X744_splice 0.21 TCGA-CG-5721-01 X 19031984 19031984 A G GPR64 Missense_Mutation p.S307P 0.56 tolerated_low_confidence(0.08) possibly_damaging(0.623) TCGA-CG-5721-01 X 19041550 19041550 T C GPR64 Missense_Mutation p.T178A 0.23 tolerated_low_confidence(0.17) benign(0.005) TCGA-CG-5721-01 X 19377808 19377808 A G PDHA1 3'UTR 0.26 TCGA-CG-5721-01 X 19560215 19560215 G - SH3KBP1 Frame_Shift_Del p.L574Cfs*39 0.52 TCGA-CG-5721-01 X 20190977 20190977 T C RPS6KA3 Missense_Mutation p.N414D 0.54 tolerated(0.2) benign(0.097) TCGA-CG-5721-01 X 21581506 21581506 T C CNKSR2 Missense_Mutation p.L515S 0.25 tolerated(0.38) benign(0.042) TCGA-CG-5721-01 X 21896666 21896666 A G MBTPS2 Missense_Mutation p.T373A 0.26 tolerated(0.29) benign(0.076) TCGA-CG-5721-01 X 21896713 21896713 A G MBTPS2 Missense_Mutation p.I388M 0.22 tolerated(0.22) benign(0.021) TCGA-CG-5721-01 X 22196458 22196458 T G PHEX Missense_Mutation p.D517E 0.25 tolerated(0.17) probably_damaging(0.994) TCGA-CG-5721-01 X 2406722 2406722 C G ZBED1 Missense_Mutation p.G680A 0.10 tolerated_low_confidence(1) benign(0) TCGA-CG-5721-01 X 301587 301587 G A PPP2R3B Nonsense_Mutation p.R422* 0.44 TCGA-CG-5721-01 X 30745650 30745650 C T GK Silent p.I544I 0.72 TCGA-CG-5721-01 X 31222113 31222113 T C DMD Missense_Mutation p.N3258D 0.27 benign(0.332) TCGA-CG-5721-01 X 31496459 31496459 T C DMD Missense_Mutation p.T2901A 0.48 benign(0.388) TCGA-CG-5721-01 X 3227797 3227797 A T MXRA5 Missense_Mutation p.L2816H 0.34 deleterious(0) possibly_damaging(0.896) TCGA-CG-5721-01 X 3239210 3239210 T C MXRA5 Missense_Mutation p.T1506A 0.25 tolerated(0.43) benign(0.026) TCGA-CG-5721-01 X 33229443 33229443 T A DMD 5'UTR 0.57 TCGA-CG-5721-01 X 33229458 33229458 A - DMD 5'UTR 0.61 TCGA-CG-5721-01 X 34150216 34150216 G A FAM47A Silent p.Y60Y 0.51 TCGA-CG-5721-01 X 3573212 3573212 A G PRKX Missense_Mutation p.F193L 0.19 deleterious(0.01) possibly_damaging(0.847) TCGA-CG-5721-01 X 37935887 37935887 C T SYTL5 Missense_Mutation p.R208W 0.65 deleterious(0.02) benign(0.033) TCGA-CG-5721-01 X 39911469 39911469 T A BCOR Nonsense_Mutation p.K1721* 0.65 TCGA-CG-5721-01 X 40450603 40450603 T C ATP6AP2 Missense_Mutation p.Y96H 0.28 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 X 40464919 40464919 T C ATP6AP2 Missense_Mutation p.I322T 0.28 deleterious(0.02) benign(0.084) TCGA-CG-5721-01 X 40588560 40588608 TCCATACTCACCTTTCCACATCAGATTTCCTTGGCAGTCTAAGAAGAAA CCATACTCACCTTTCCACATCAGATTTCCTTGGCAGTCTAAGAAG MED14 Splice_Site p.X72_splice 0.10 TCGA-CG-5721-01 X 40994031 40994031 A C USP9X Missense_Mutation p.I126L 0.53 tolerated(0.11) benign(0.005) TCGA-CG-5721-01 X 41333485 41333485 A G NYX Missense_Mutation p.N260S 0.67 deleterious(0.03) probably_damaging(0.995) TCGA-CG-5721-01 X 44109680 44109680 G A EFHC2 Silent p.H206H 0.62 TCGA-CG-5721-01 X 44732756 44732756 G - KDM6A 5'Flank 0.41 TCGA-CG-5721-01 X 44922891 44922891 G A KDM6A Silent p.T584T 0.53 TCGA-CG-5721-01 X 47030548 47030548 G A RBM10 Missense_Mutation p.R108Q 0.16 deleterious(0) probably_damaging(0.953) TCGA-CG-5721-01 X 47084389 47084389 T C CDK16 Silent p.G248G 0.21 TCGA-CG-5721-01 X 47087990 47087990 A T CDK16 Missense_Mutation p.E541V 0.50 deleterious(0.03) probably_damaging(0.995) TCGA-CG-5721-01 X 47100775 47100775 G A USP11 Missense_Mutation p.A359T 0.69 deleterious(0) probably_damaging(1) TCGA-CG-5721-01 X 47107040 47107040 G A USP11 Missense_Mutation p.G899D 0.31 tolerated(0.11) probably_damaging(0.994) TCGA-CG-5721-01 X 47428172 47428172 T C ARAF Missense_Mutation p.F378L 0.23 tolerated(1) benign(0.356) TCGA-CG-5721-01 X 47836190 47836190 A G ZNF182 Silent p.C432C 0.25 TCGA-CG-5721-01 X 48370833 48370833 A G PORCN Missense_Mutation p.I165V 0.48 tolerated(1) benign(0.004) TCGA-CG-5721-01 X 48545297 48545299 GAA - WAS In_Frame_Del p.K232del 0.31 TCGA-CG-5721-01 X 48826140 48826140 T C KCND1 Missense_Mutation p.H180R 0.35 deleterious(0.01) benign(0.157) TCGA-CG-5721-01 X 49020804 49020804 A G MAGIX Intron 0.27 TCGA-CG-5721-01 X 49048110 49048110 T C SYP Silent p.K242K 0.62 TCGA-CG-5721-01 X 49143293 49143293 T C PPP1R3F Missense_Mutation p.V714A 0.53 tolerated_low_confidence(0.09) possibly_damaging(0.708) TCGA-CG-5721-01 X 49143411 49143411 T C PPP1R3F Silent p.C753C 0.23 TCGA-CG-5721-01 X 49957564 49957564 T C AKAP4 Silent p.Q600Q 0.23 TCGA-CG-5721-01 X 49958802 49958802 T C AKAP4 Missense_Mutation p.N188D 0.04 tolerated(0.11) probably_damaging(0.997) TCGA-CG-5721-01 X 50146513 50146513 G A DGKK RNA 0.67 TCGA-CG-5721-01 X 52673637 52673637 A G SSX7 3'UTR 0.41 TCGA-CG-5721-01 X 53114010 53114010 A G TSPYL2 Missense_Mutation p.N320S 0.24 deleterious(0) probably_damaging(0.998) TCGA-CG-5721-01 X 53285092 53285092 G A IQSEC2 Missense_Mutation p.R297C 0.67 deleterious(0) probably_damaging(0.944) TCGA-CG-5721-01 X 53563521 53563521 C T HUWE1 Missense_Mutation p.R4082H 0.31 unknown(0) TCGA-CG-5721-01 X 54022124 54022124 A G PHF8 Splice_Site p.X477_splice 0.12 TCGA-CG-5721-01 X 54475618 54475618 A G FGD1 Silent p.N744N 0.29 TCGA-CG-5721-01 X 54492003 54492003 T A FGD1 Missense_Mutation p.N506I 0.68 deleterious(0) probably_damaging(0.977) TCGA-CG-5721-01 X 54497788 54497788 C T FGD1 Missense_Mutation p.R147H 0.18 tolerated_low_confidence(0.13) benign(0.239) TCGA-CG-5721-01 X 54840820 54840820 G - MAGED2 Intron 0.53 TCGA-CG-5721-01 X 54956700 54956700 T C TRO Silent p.G1181G 0.29 TCGA-CG-5721-01 X 55117854 55117854 A G PAGE2 Missense_Mutation p.M95V 0.23 tolerated(0.11) benign(0.021) TCGA-CG-5721-01 X 55513438 55513438 A G USP51 Silent p.N645N 0.60 TCGA-CG-5721-01 X 56296710 56296710 A G KLF8 Missense_Mutation p.Y285C 0.25 deleterious(0) probably_damaging(0.999) TCGA-CG-5721-01 X 5950733 5950733 T C NLGN4X Intron 0.27 TCGA-CG-5721-01 X 63411777 63411777 C T AMER1 Missense_Mutation p.A464T 0.57 deleterious(0) possibly_damaging(0.763) TCGA-CG-5721-01 X 63413026 63413026 G A AMER1 Silent p.S47S 0.31 TCGA-CG-5721-01 X 64140121 64140121 T C ZC4H2 Missense_Mutation p.I80V 0.62 tolerated(0.08) benign(0.019) TCGA-CG-5721-01 X 66942766 66942766 T G AR Missense_Mutation p.N849K 0.30 deleterious(0.01) possibly_damaging(0.84) TCGA-CG-5721-01 X 67412815 67412815 A G OPHN1 Missense_Mutation p.Y408H 0.24 deleterious(0) probably_damaging(0.994) TCGA-CG-5721-01 X 69606471 69606471 C T KIF4A Missense_Mutation p.R680C 0.57 deleterious(0) probably_damaging(0.979) TCGA-CG-5721-01 X 69670589 69670589 G A DLG3 Missense_Mutation p.S314N 0.18 tolerated(0.35) benign(0.027) TCGA-CG-5721-01 X 70471056 70471056 T C ZMYM3 Silent p.K250K 0.24 TCGA-CG-5721-01 X 71359174 71359174 A G NHSL2 Silent p.L592L 0.30 TCGA-CG-5721-01 X 71428266 71428266 A G ERCC6L Silent p.G117G 0.26 TCGA-CG-5721-01 X 71494808 71494808 A G RPS4X Intron 0.77 TCGA-CG-5721-01 X 71846871 71846871 A G PHKA1 Silent p.S581S 0.26 TCGA-CG-5721-01 X 73042059 73042059 A G XIST RNA 0.20 TCGA-CG-5721-01 X 73043716 73043716 T A XIST RNA 0.51 TCGA-CG-5721-01 X 73045008 73045008 A G XIST RNA 0.62 TCGA-CG-5721-01 X 73071282 73071282 A G XIST RNA 0.18 TCGA-CG-5721-01 X 77224557 77224557 A G PGAM4 Silent p.I193I 0.25 TCGA-CG-5721-01 X 78216198 78216198 C T P2RY10 Missense_Mutation p.R61C 0.50 tolerated(0.12) benign(0.056) TCGA-CG-5721-01 X 7889822 7889822 T C PNPLA4 Missense_Mutation p.I115V 0.07 tolerated(0.47) benign(0.052) TCGA-CG-5721-01 X 79931975 79931975 C T BRWD3 3'UTR 0.31 TCGA-CG-5721-01 X 82764004 82764004 T C POU3F4 Silent p.G224G 0.31 TCGA-CG-5721-01 X 83403063 83403063 T - RPS6KA6 Frame_Shift_Del p.A110Pfs*3 0.45 TCGA-CG-5721-01 X 83723662 83723662 T C HDX Missense_Mutation p.I357V 0.08 tolerated(0.43) benign(0.002) TCGA-CG-5721-01 X 84362428 84362428 A G SATL1 Missense_Mutation p.V516A 0.55 tolerated(0.75) possibly_damaging(0.762) TCGA-CG-5721-01 X 85119781 85119781 G A CHM Missense_Mutation p.P606S 0.69 deleterious(0) probably_damaging(0.995) TCGA-CG-5721-01 X 8538577 8538577 A G KAL1 Missense_Mutation p.V342A 0.25 tolerated(0.35) possibly_damaging(0.449) TCGA-CG-5721-01 X 85403701 85403701 A G DACH2 Missense_Mutation p.E26G 0.53 tolerated(0.14) benign(0.084) TCGA-CG-5721-01 X 8764320 8764320 T - FAM9A Frame_Shift_Del p.K159Nfs*3 0.58 TCGA-CG-5721-01 X 99920261 99920261 G A SRPX2 Missense_Mutation p.R185H 0.30 deleterious(0.02) benign(0.011) TCGA-CG-5722-01 10 35896709 35896709 G A GJD4 Missense_Mutation p.A90T 0.12 deleterious(0.03) possibly_damaging(0.67) TCGA-CG-5722-01 11 102195974 102195975 AC - BIRC3 Frame_Shift_Del p.T246Sfs*3 0.11 TCGA-CG-5722-01 11 4904053 4904053 G T OR51T1 Silent p.L335L 0.08 TCGA-CG-5722-01 11 59245145 59245145 T C OR4D10 Silent p.V81V 0.23 TCGA-CG-5722-01 11 65561652 65561652 C T OVOL1 Missense_Mutation p.S84F 0.04 tolerated(0.07) benign(0.033) TCGA-CG-5722-01 12 4736611 4736611 C T AKAP3 Missense_Mutation p.R486H 0.14 tolerated(0.54) benign(0.004) TCGA-CG-5722-01 12 57005736 57005736 G T BAZ2A Missense_Mutation p.A479E 0.25 tolerated(0.39) benign(0.05) TCGA-CG-5722-01 12 65085273 65085273 C T RASSF3 Missense_Mutation p.R161W 0.12 deleterious(0.02) possibly_damaging(0.766) TCGA-CG-5722-01 12 7805130 7805130 C T APOBEC1 Missense_Mutation p.V116I 0.12 tolerated(0.16) benign(0.129) TCGA-CG-5722-01 13 36046612 36046612 C T NBEA Missense_Mutation p.T2175M 0.15 deleterious(0) benign(0.327) TCGA-CG-5722-01 14 64449413 64449413 C G SYNE2 Missense_Mutation p.F634L 0.04 benign(0.036) TCGA-CG-5722-01 14 72139105 72139105 G A SIPA1L1 Missense_Mutation p.R957Q 0.13 deleterious(0) probably_damaging(0.978) TCGA-CG-5722-01 14 74946851 74946851 T C NPC2 3'UTR 0.17 TCGA-CG-5722-01 14 95234807 95234807 C T GSC 3'UTR 0.08 TCGA-CG-5722-01 15 34528245 34528245 T C SLC12A6 Silent p.E1066E 0.14 TCGA-CG-5722-01 15 35045227 35045227 G A GJD2 Nonsense_Mutation p.R140* 0.11 TCGA-CG-5722-01 15 72227776 72227776 T A MYO9A Nonsense_Mutation p.R810* 0.09 TCGA-CG-5722-01 15 84690187 84690187 G A ADAMTSL3 Nonsense_Mutation p.W1433* 0.11 TCGA-CG-5722-01 16 10274134 10274134 G A GRIN2A Silent p.D45D 0.30 TCGA-CG-5722-01 16 2946611 2946611 T G FLYWCH2 Missense_Mutation p.V54G 0.12 tolerated(0.55) possibly_damaging(0.575) TCGA-CG-5722-01 16 50750497 50750497 G C NOD2 Splice_Site p.X821_splice 0.08 TCGA-CG-5722-01 16 54967637 54967637 C T IRX5 Missense_Mutation p.P435L 0.09 tolerated(0.09) unknown(0) TCGA-CG-5722-01 16 844151 844151 C T CHTF18 Missense_Mutation p.R634C 0.18 deleterious(0) possibly_damaging(0.634) TCGA-CG-5722-01 17 18110185 18110185 C T ALKBH5 Missense_Mutation p.P303L 0.07 tolerated_low_confidence(0.23) benign(0.002) TCGA-CG-5722-01 17 26890883 26890883 C T PIGS Missense_Mutation p.R110K 0.05 tolerated(0.77) benign(0.002) TCGA-CG-5722-01 17 30349784 30349784 A G LRRC37B Missense_Mutation p.Q540R 0.22 tolerated(0.15) benign(0.403) TCGA-CG-5722-01 17 31350876 31350876 T A ASIC2 Intron 0.13 TCGA-CG-5722-01 17 4875783 4875783 G A CAMTA2 Missense_Mutation p.S874F 0.25 deleterious(0) probably_damaging(0.997) TCGA-CG-5722-01 17 57968199 57968201 CTC - TUBD1 In_Frame_Del p.E55del 0.13 TCGA-CG-5722-01 17 61568741 61568741 C T ACE Missense_Mutation p.R971W 0.27 deleterious(0) probably_damaging(1) TCGA-CG-5722-01 17 7106879 7106879 C T DLG4 Silent p.V166V 0.17 TCGA-CG-5722-01 17 8216418 8216418 C T ARHGEF15 Silent p.A260A 0.12 TCGA-CG-5722-01 17 8219149 8219149 G A ARHGEF15 Missense_Mutation p.A500T 0.10 tolerated(0.06) probably_damaging(0.995) TCGA-CG-5722-01 17 8380351 8380351 C T MYH10 Missense_Mutation p.A1908T 0.07 benign(0.002) TCGA-CG-5722-01 18 34340614 34340614 C G FHOD3 Missense_Mutation p.P1315R 0.16 deleterious(0.01) benign(0.028) TCGA-CG-5722-01 18 5291265 5291265 G A ZBTB14 Silent p.F314F 0.06 TCGA-CG-5722-01 18 77246792 77246792 G A NFATC1 Silent p.P866P 0.11 TCGA-CG-5722-01 19 15989736 15989736 C T CYP4F2 Missense_Mutation p.G470R 0.07 deleterious(0) probably_damaging(1) TCGA-CG-5722-01 19 31769496 31769496 G A TSHZ3 Silent p.L401L 0.08 TCGA-CG-5722-01 19 37039085 37039085 G T ZNF529 Missense_Mutation p.S125R 0.11 tolerated(0.15) possibly_damaging(0.898) TCGA-CG-5722-01 19 44933774 44933774 G C ZNF229 Silent p.V394V 0.19 TCGA-CG-5722-01 19 4793005 4793005 G A FEM1A Missense_Mutation p.R380H 0.37 deleterious(0) probably_damaging(0.999) TCGA-CG-5722-01 19 51322566 51322566 G A KLK1 Nonsense_Mutation p.Q225* 0.11 TCGA-CG-5722-01 19 5456204 5456204 G A ZNRF4 Silent p.A234A 0.18 TCGA-CG-5722-01 19 55317425 55317425 G A KIR2DL4 Silent p.S127S 0.29 TCGA-CG-5722-01 19 8564247 8564247 C T PRAM1 Missense_Mutation p.G149S 0.08 tolerated(1) benign(0.036) TCGA-CG-5722-01 19 9492250 9492250 A G ZNF177 Missense_Mutation p.K415E 0.08 tolerated(0.12) possibly_damaging(0.819) TCGA-CG-5722-01 1 111441780 111441780 G T CD53 Missense_Mutation p.C208F 0.09 deleterious(0.02) probably_damaging(1) TCGA-CG-5722-01 1 144917576 144917576 G A PDE4DIP Missense_Mutation p.R510C 0.07 tolerated(0.09) benign(0.008) TCGA-CG-5722-01 1 192153709 192153709 A G RGS18 3'UTR 0.07 TCGA-CG-5722-01 1 225142780 225142780 T C DNAH14 Missense_Mutation p.L66S 0.11 tolerated(0.15) possibly_damaging(0.478) TCGA-CG-5722-01 1 22927491 22927491 C T EPHA8 Missense_Mutation p.A880V 0.10 tolerated(0.06) benign(0.193) TCGA-CG-5722-01 1 232650895 232650895 G A SIPA1L2 Missense_Mutation p.P64L 0.09 tolerated(0.06) benign(0.102) TCGA-CG-5722-01 1 248457935 248457935 C A OR2T12 Missense_Mutation p.A316S 0.09 tolerated_low_confidence(0.57) benign(0.002) TCGA-CG-5722-01 20 43572151 43572151 C T TOMM34 Silent p.L256L 0.12 TCGA-CG-5722-01 21 31045467 31045467 C G GRIK1 Missense_Mutation p.E188Q 0.17 tolerated(0.06) probably_damaging(0.931) TCGA-CG-5722-01 22 50715103 50715103 C T PLXNB2 Silent p.Q1764Q 0.10 TCGA-CG-5722-01 2 12880931 12880931 C T TRIB2 3'UTR 0.12 TCGA-CG-5722-01 2 178096690 178096690 G T NFE2L2 Missense_Mutation p.P214Q 0.11 deleterious(0.03) benign(0.028) TCGA-CG-5722-01 2 179426117 179426117 G C TTN Missense_Mutation p.P28248A 0.08 TCGA-CG-5722-01 2 179581972 179581972 G A TTN Missense_Mutation p.R8497C 0.16 TCGA-CG-5722-01 2 205990415 205990415 C T PARD3B Missense_Mutation p.S463L 0.10 deleterious(0.03) probably_damaging(0.993) TCGA-CG-5722-01 2 228681804 228681805 TG - CCL20 3'UTR 0.10 TCGA-CG-5722-01 2 230910835 230910835 T C SLC16A14 Missense_Mutation p.H336R 0.14 tolerated(0.06) probably_damaging(0.999) TCGA-CG-5722-01 3 124436117 124436117 A T KALRN Missense_Mutation p.D1070V 0.12 tolerated(0.08) probably_damaging(0.998) TCGA-CG-5722-01 3 157188240 157188240 C T VEPH1 Missense_Mutation p.E73K 0.07 tolerated(0.53) benign(0.003) TCGA-CG-5722-01 3 169644391 169644391 T A SAMD7 Missense_Mutation p.I114N 0.14 deleterious(0.01) benign(0.26) TCGA-CG-5722-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.12 deleterious(0.02) probably_damaging(0.959) TCGA-CG-5722-01 3 186299790 186299790 G C DNAJB11 Silent p.V202V 0.17 TCGA-CG-5722-01 3 36896947 36896947 C T TRANK1 Silent p.S1378S 0.11 TCGA-CG-5722-01 4 167012436 167012436 C T TLL1 Missense_Mutation p.R867W 0.14 tolerated(0.06) possibly_damaging(0.832) TCGA-CG-5722-01 4 39271702 39271702 C A WDR19 Missense_Mutation p.H1155Q 0.05 deleterious(0) probably_damaging(0.99) TCGA-CG-5722-01 4 83278030 83278030 T C HNRNPD Missense_Mutation p.M258V 0.13 tolerated(0.34) benign(0.002) TCGA-CG-5722-01 4 85553014 85553014 G A CDS1 Missense_Mutation p.R208H 0.05 deleterious(0.02) probably_damaging(0.93) TCGA-CG-5722-01 5 140166324 140166324 C T PCDHA1 Missense_Mutation p.S150L 0.12 deleterious_low_confidence(0) possibly_damaging(0.72) TCGA-CG-5722-01 5 140208285 140208285 G T PCDHA6 Missense_Mutation p.E203D 0.11 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CG-5722-01 5 140222835 140222835 G A PCDHA8 Silent p.P643P 0.12 TCGA-CG-5722-01 5 140741004 140741004 C A PCDHGB2 Silent p.S434S 0.19 TCGA-CG-5722-01 5 142779330 142779330 C T NR3C1 Missense_Mutation p.V359I 0.09 deleterious(0.02) benign(0.244) TCGA-CG-5722-01 5 145969287 145969287 G T PPP2R2B 3'UTR 0.33 TCGA-CG-5722-01 5 55407173 55407173 G - ANKRD55 Frame_Shift_Del p.Q468Sfs*13 0.12 TCGA-CG-5722-01 6 152673313 152673313 G A SYNE1 Missense_Mutation p.T3810M 0.11 benign(0.256) TCGA-CG-5722-01 6 34827349 34827350 - T UHRF1BP1 Splice_Site p.X1072_splice 0.16 TCGA-CG-5722-01 6 43581728 43581728 A G POLH Missense_Mutation p.T526A 0.04 tolerated(0.78) benign(0.002) TCGA-CG-5722-01 6 49415470 49415470 C T MUT Silent p.K491K 0.05 TCGA-CG-5722-01 6 73904416 73904416 C T KCNQ5 Missense_Mutation p.T712M 0.13 deleterious(0) possibly_damaging(0.891) TCGA-CG-5722-01 6 75838110 75838110 A G COL12A1 Missense_Mutation p.I2081T 0.07 benign(0.226) TCGA-CG-5722-01 7 20198241 20198241 G A MACC1 Silent p.L581L 0.11 TCGA-CG-5722-01 7 27224468 27224468 G A HOXA11 Missense_Mutation p.A99V 0.14 tolerated(0.24) benign(0.01) TCGA-CG-5722-01 7 38393355 38393355 T G TRGV4 Missense_Mutation p.E105D 0.16 tolerated(0.09) benign(0.051) TCGA-CG-5722-01 7 45222946 45222946 G A RAMP3 Missense_Mutation p.V128I 0.09 deleterious(0.02) benign(0.049) TCGA-CG-5722-01 7 98460898 98460898 G A TMEM130 Missense_Mutation p.R71C 0.21 tolerated(0.06) benign(0.215) TCGA-CG-5722-01 8 104898187 104898187 C T RIMS2 Silent p.L454L 0.10 TCGA-CG-5722-01 8 125499249 125499249 C T RNF139 Silent p.L453L 0.11 TCGA-CG-5722-01 9 134151258 134151258 G A FAM78A Silent p.Y103Y 0.09 TCGA-CG-5722-01 9 135042158 135042158 C T NTNG2 5'UTR 0.07 TCGA-CG-5722-01 9 5772699 5772699 A G KIAA1432 Missense_Mutation p.E1251G 0.13 deleterious(0) possibly_damaging(0.844) TCGA-CG-5722-01 9 86258434 86258434 A C IDNK Silent p.V101V 0.09 TCGA-CG-5722-01 X 100417865 100417865 G A CENPI Missense_Mutation p.G727E 0.23 tolerated(0.09) benign(0.025) TCGA-CG-5722-01 X 101139539 101139539 G A ZMAT1 Missense_Mutation p.S287L 0.09 deleterious(0.05) benign(0.149) TCGA-CG-5722-01 X 102529130 102529130 T G TCEAL5 Missense_Mutation p.D121A 0.09 deleterious(0) probably_damaging(0.981) TCGA-CG-5722-01 X 105179181 105179181 A G NRK Silent p.E1174E 0.04 TCGA-CG-5722-01 X 127185408 127185408 C A ACTRT1 Nonsense_Mutation p.E260* 0.21 TCGA-CG-5722-01 X 19973635 19973635 C T CXorf23 Missense_Mutation p.A442T 0.09 deleterious(0.01) possibly_damaging(0.584) TCGA-CG-5722-01 X 34961131 34961131 C A FAM47B Silent p.A61A 0.13 TCGA-CG-5722-01 X 49236853 49236853 C T GAGE2B Missense_Mutation p.T8I 0.06 probably_damaging(0.998) TCGA-CG-5722-01 X 51076257 51076257 G A NUDT10 Missense_Mutation p.G147D 0.10 tolerated(0.88) benign(0.183) TCGA-CG-5722-01 X 53655786 53655786 C A HUWE1 Missense_Mutation p.S344I 0.11 benign(0.402) TCGA-CG-5722-01 X 73962731 73962731 A C KIAA2022 Missense_Mutation p.M554R 0.09 deleterious(0) probably_damaging(0.999) TCGA-CG-5723-01 10 101370949 101370949 T G SLC25A28 Missense_Mutation p.E251A 0.21 tolerated(0.06) possibly_damaging(0.593) TCGA-CG-5723-01 10 101455831 101455831 G A ENTPD7 Missense_Mutation p.R321Q 0.24 deleterious(0.02) probably_damaging(0.995) TCGA-CG-5723-01 10 102054754 102054754 C T PKD2L1 Missense_Mutation p.G495S 0.31 deleterious(0.04) probably_damaging(0.993) TCGA-CG-5723-01 10 103870407 103870407 C - LDB1 Frame_Shift_Del p.G135Vfs*31 0.28 TCGA-CG-5723-01 10 104128078 104128078 C T GBF1 Silent p.L915L 0.23 TCGA-CG-5723-01 10 105362048 105362048 G A SH3PXD2A Missense_Mutation p.A948V 0.34 tolerated(0.23) probably_damaging(0.998) TCGA-CG-5723-01 10 106074825 106074825 C T ITPRIP Missense_Mutation p.D329N 0.17 deleterious(0.02) possibly_damaging(0.524) TCGA-CG-5723-01 10 108448006 108448006 G A SORCS1 Missense_Mutation p.R502C 0.17 deleterious(0.02) benign(0.071) TCGA-CG-5723-01 10 111893350 111893350 A - ADD3 Frame_Shift_Del p.K701Rfs*8 0.24 TCGA-CG-5723-01 10 1126020 1126020 T C WDR37 Missense_Mutation p.L102P 0.15 tolerated(0.25) benign(0.165) TCGA-CG-5723-01 10 114911564 114911564 T G TCF7L2 Missense_Mutation p.M361R 0.23 deleterious(0) probably_damaging(0.991) TCGA-CG-5723-01 10 115987018 115987018 A - TDRD1 Frame_Shift_Del p.N1123Tfs*10 0.21 TCGA-CG-5723-01 10 115987869 115987869 A - TDRD1 Frame_Shift_Del p.K1176Nfs*3 0.20 TCGA-CG-5723-01 10 116602749 116602749 T C FAM160B1 Silent p.L194L 0.12 TCGA-CG-5723-01 10 116606441 116606441 C T FAM160B1 Missense_Mutation p.P508S 0.15 tolerated(0.34) benign(0.034) TCGA-CG-5723-01 10 117849274 117849274 A - GFRA1 Frame_Shift_Del p.L392Cfs*12 0.24 TCGA-CG-5723-01 10 118441370 118441370 C T HSPA12A Missense_Mutation p.R285H 0.24 tolerated(0.06) benign(0.33) TCGA-CG-5723-01 10 119042787 119042787 A G PDZD8 Missense_Mutation p.S1153P 0.22 deleterious_low_confidence(0.01) benign(0.035) TCGA-CG-5723-01 10 119798647 119798647 T - RAB11FIP2 Frame_Shift_Del p.D368Ifs*19 0.22 TCGA-CG-5723-01 10 120354444 120354444 A G PRLHR Missense_Mutation p.S105P 0.08 deleterious(0.03) probably_damaging(0.995) TCGA-CG-5723-01 10 121586928 121586928 C T INPP5F Missense_Mutation p.S1012L 0.17 deleterious_low_confidence(0) benign(0.231) TCGA-CG-5723-01 10 121587003 121587003 A - INPP5F Frame_Shift_Del p.T1039Pfs*17 0.18 TCGA-CG-5723-01 10 12162823 12162823 C A DHTKD1 Missense_Mutation p.A899D 0.22 deleterious(0) probably_damaging(1) TCGA-CG-5723-01 10 123353418 123353418 C T FGFR2 5'UTR 0.36 TCGA-CG-5723-01 10 124066813 124066813 T - BTBD16 Frame_Shift_Del p.F302Lfs*15 0.24 TCGA-CG-5723-01 10 126355965 126355965 C T FAM53B Intron 0.18 TCGA-CG-5723-01 10 126716332 126716332 A G CTBP2 5'UTR 0.35 TCGA-CG-5723-01 10 127730759 127730759 C A ADAM12 Intron 0.12 TCGA-CG-5723-01 10 129160405 129160405 C T DOCK1 Missense_Mutation p.R1100C 0.15 deleterious(0) benign(0.041) TCGA-CG-5723-01 10 13240764 13240764 A G MCM10 Missense_Mutation p.K733R 0.26 tolerated(0.15) benign(0.033) TCGA-CG-5723-01 10 133769302 133769302 A C PPP2R2D Missense_Mutation p.K368N 0.24 tolerated(0.08) benign(0.17) TCGA-CG-5723-01 10 13523008 13523008 C T BEND7 Silent p.A266A 0.22 TCGA-CG-5723-01 10 14816491 14816491 C T FAM107B Missense_Mutation p.A58T 0.21 deleterious_low_confidence(0) benign(0.144) TCGA-CG-5723-01 10 15161374 15161374 G - NMT2 Frame_Shift_Del p.R380Gfs*9 0.11 TCGA-CG-5723-01 10 16992003 16992003 G A CUBN Nonsense_Mutation p.R1693* 0.20 TCGA-CG-5723-01 10 17026127 17026127 G A CUBN Missense_Mutation p.A1501V 0.22 tolerated(0.2) benign(0.127) TCGA-CG-5723-01 10 17152969 17152969 C T CUBN Missense_Mutation p.V322I 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-CG-5723-01 10 18087522 18087522 A - TMEM236 3'UTR 0.27 TCGA-CG-5723-01 10 24832909 24832910 - A KIAA1217 Frame_Shift_Ins p.F1573Vfs*2 0.20 TCGA-CG-5723-01 10 25701295 25701295 G A GPR158 Missense_Mutation p.V410I 0.25 tolerated(0.31) benign(0.14) TCGA-CG-5723-01 10 25887671 25887671 A C GPR158 Missense_Mutation p.N1039T 0.26 tolerated(0.57) benign(0.002) TCGA-CG-5723-01 10 26856459 26856459 A G APBB1IP 3'UTR 0.29 TCGA-CG-5723-01 10 27512289 27512289 G A ACBD5 Silent p.G156G 0.18 TCGA-CG-5723-01 10 27551918 27551918 G T ARMC4P1 RNA 0.27 TCGA-CG-5723-01 10 28030368 28030368 A G MKX Missense_Mutation p.L85P 0.17 deleterious(0) probably_damaging(0.953) TCGA-CG-5723-01 10 28030415 28030415 C G MKX Silent p.G69G 0.21 TCGA-CG-5723-01 10 29777554 29777554 T C SVIL Missense_Mutation p.R1442G 0.21 deleterious(0.01) benign(0.016) TCGA-CG-5723-01 10 29788162 29788162 T C SVIL Missense_Mutation p.T1183A 0.17 deleterious(0) benign(0.213) TCGA-CG-5723-01 10 30336508 30336508 G A KIAA1462 Silent p.G78G 0.21 TCGA-CG-5723-01 10 32120692 32120692 T - ARHGAP12 Frame_Shift_Del p.I475Lfs*71 0.20 TCGA-CG-5723-01 10 38345312 38345312 T C ZNF33A Missense_Mutation p.C754R 0.22 deleterious(0) probably_damaging(0.924) TCGA-CG-5723-01 10 46322015 46322015 A T AGAP4 Missense_Mutation p.I447N 0.19 deleterious(0.01) benign(0.348) TCGA-CG-5723-01 10 48389993 48389993 C T RBP3 Silent p.T295T 0.33 TCGA-CG-5723-01 10 51749089 51749089 C T AGAP6 Missense_Mutation p.A82V 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.739) TCGA-CG-5723-01 10 52103731 52103731 G - SGMS1 Frame_Shift_Del p.L49Cfs*15 0.16 TCGA-CG-5723-01 10 54074424 54074424 T C DKK1 Missense_Mutation p.I77T 0.27 tolerated(0.18) benign(0.022) TCGA-CG-5723-01 10 54530516 54530516 G - MBL2 Frame_Shift_Del p.P73Lfs*68 0.23 TCGA-CG-5723-01 10 5493800 5493800 G T NET1 Missense_Mutation p.S88I 0.19 deleterious(0) probably_damaging(0.964) TCGA-CG-5723-01 10 5494448 5494448 T C NET1 Missense_Mutation p.M164T 0.30 tolerated(0.49) benign(0.002) TCGA-CG-5723-01 10 5566982 5566982 C T CALML3 5'UTR 0.22 TCGA-CG-5723-01 10 55912943 55912943 G A PCDH15 Silent p.I567I 0.27 TCGA-CG-5723-01 10 5791573 5791573 G A FAM208B Silent p.L2063L 0.21 TCGA-CG-5723-01 10 61819650 61819651 - G ANK3 Intron 0.22 TCGA-CG-5723-01 10 61846456 61846456 G A ANK3 Missense_Mutation p.R1243C 0.29 probably_damaging(0.999) TCGA-CG-5723-01 10 62149221 62149221 T - ANK3 Frame_Shift_Del p.R26Gfs*21 0.09 TCGA-CG-5723-01 10 64573060 64573060 G A EGR2 Silent p.G446G 0.20 TCGA-CG-5723-01 10 71010120 71010120 C T HKDC1 Missense_Mutation p.R549W 0.25 deleterious(0.01) benign(0.003) TCGA-CG-5723-01 10 72633180 72633180 G A SGPL1 Missense_Mutation p.V378I 0.24 tolerated(0.25) benign(0.03) TCGA-CG-5723-01 10 73375330 73375330 G A CDH23 Missense_Mutation p.R301Q 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-CG-5723-01 10 75394429 75394429 G T MYOZ1 Missense_Mutation p.F105L 0.22 tolerated(0.52) benign(0) TCGA-CG-5723-01 10 75530871 75530871 C A SEC24C 3'UTR 0.29 TCGA-CG-5723-01 10 76803726 76803726 C T DUPD1 Missense_Mutation p.V84M 0.26 deleterious(0) probably_damaging(0.985) TCGA-CG-5723-01 10 7759669 7759669 A G ITIH2 Missense_Mutation p.Y183C 0.26 deleterious(0.02) probably_damaging(1) TCGA-CG-5723-01 10 7771947 7771947 G A ITIH2 Missense_Mutation p.V438I 0.21 tolerated(0.07) probably_damaging(0.982) TCGA-CG-5723-01 10 78844418 78844418 C T KCNMA1 Silent p.A500A 0.27 TCGA-CG-5723-01 10 79764517 79764517 T G POLR3A Missense_Mutation p.K735T 0.26 tolerated(0.25) benign(0.021) TCGA-CG-5723-01 10 8006284 8006284 A - TAF3 Frame_Shift_Del p.T272Qfs*64 0.18 TCGA-CG-5723-01 10 8006390 8006390 C T TAF3 Missense_Mutation p.S306F 0.21 deleterious(0.01) possibly_damaging(0.862) TCGA-CG-5723-01 10 8056685 8056685 C T TAF3 Missense_Mutation p.H921Y 0.33 deleterious_low_confidence(0) benign(0) TCGA-CG-5723-01 10 83635626 83635626 C T NRG3 Missense_Mutation p.A177V 0.09 tolerated(0.28) probably_damaging(0.99) TCGA-CG-5723-01 10 85981602 85981602 G T LRIT2 3'UTR 0.26 TCGA-CG-5723-01 10 88854214 88854214 T G GLUD1 Missense_Mutation p.I105L 0.25 tolerated(0.08) benign(0.095) TCGA-CG-5723-01 10 90492221 90492222 - T LIPK Frame_Shift_Ins p.A197Cfs*9 0.17 TCGA-CG-5723-01 10 90661374 90661374 A - STAMBPL1 Intron 0.24 TCGA-CG-5723-01 10 91371452 91371452 C T PANK1 Splice_Site p.X352_splice 0.24 TCGA-CG-5723-01 10 91404976 91404976 C T PANK1 Silent p.A28A 0.16 TCGA-CG-5723-01 10 92634643 92634643 G A RPP30 Missense_Mutation p.A34T 0.17 deleterious(0) probably_damaging(0.983) TCGA-CG-5723-01 10 93569 93569 C T TUBB8 Missense_Mutation p.V255M 0.13 deleterious_low_confidence(0.01) probably_damaging(0.992) TCGA-CG-5723-01 10 93749219 93749219 G A BTAF1 Silent p.T912T 0.22 TCGA-CG-5723-01 10 94836985 94836985 C T CYP26A1 Missense_Mutation p.T473I 0.17 tolerated(0.15) benign(0.354) TCGA-CG-5723-01 10 97919393 97919393 T - ZNF518A RNA 0.23 TCGA-CG-5723-01 10 97951722 97951722 T C BLNK 3'UTR 0.25 TCGA-CG-5723-01 10 99211969 99211969 C T ZDHHC16 Silent p.S122S 0.23 TCGA-CG-5723-01 11 100998786 100998786 A T PGR Missense_Mutation p.F339Y 0.19 tolerated_low_confidence(0.05) possibly_damaging(0.782) TCGA-CG-5723-01 11 1024987 1024988 CC - MUC6 Frame_Shift_Del p.L1027Ffs*66 0.33 TCGA-CG-5723-01 11 102714181 102714181 G A MMP3 Missense_Mutation p.L33F 0.16 tolerated(0.46) benign(0.019) TCGA-CG-5723-01 11 102743627 102743627 C - MMP12 RNA 0.25 TCGA-CG-5723-01 11 104874019 104874020 AC - CASP5 Frame_Shift_Del p.C188* 0.16 TCGA-CG-5723-01 11 107427630 107427630 G A ALKBH8 Missense_Mutation p.P77S 0.22 deleterious(0.01) probably_damaging(0.996) TCGA-CG-5723-01 11 108117798 108117798 C T ATM Missense_Mutation p.R337C 0.19 deleterious(0) probably_damaging(0.999) TCGA-CG-5723-01 11 108216477 108216477 A - ATM Frame_Shift_Del p.K2811Sfs*46 0.20 TCGA-CG-5723-01 11 111591703 111591703 T C SIK2 Missense_Mutation p.Y621H 0.22 tolerated(0.19) probably_damaging(0.909) TCGA-CG-5723-01 11 111597740 111597740 A G PPP2R1B Silent p.L651L 0.23 TCGA-CG-5723-01 11 113660472 113660472 G A ATF4P4 RNA 0.33 TCGA-CG-5723-01 11 113853876 113853876 G A HTR3A Missense_Mutation p.V143M 0.28 deleterious(0) probably_damaging(0.972) TCGA-CG-5723-01 11 117054505 117054505 T A SIDT2 Missense_Mutation p.F238Y 0.08 tolerated(0.22) benign(0.02) TCGA-CG-5723-01 11 117152859 117152859 G A RNF214 Missense_Mutation p.A529T 0.25 tolerated(0.09) possibly_damaging(0.726) TCGA-CG-5723-01 11 117302319 117302319 C T DSCAML1 Missense_Mutation p.V1829M 0.22 tolerated(0.08) benign(0.091) TCGA-CG-5723-01 11 117303931 117303931 G A DSCAML1 Missense_Mutation p.P1710L 0.09 tolerated(1) possibly_damaging(0.804) TCGA-CG-5723-01 11 117651445 117651445 C - DSCAML1 Frame_Shift_Del p.V103Wfs*176 0.38 TCGA-CG-5723-01 11 118047235 118047235 A - SCN2B 5'UTR 0.32 TCGA-CG-5723-01 11 118765107 118765107 C T CXCR5 Missense_Mutation p.A285V 0.25 tolerated(0.3) benign(0.004) TCGA-CG-5723-01 11 121177962 121177962 G A SC5D Missense_Mutation p.R214H 0.20 tolerated(0.55) benign(0.262) TCGA-CG-5723-01 11 124310573 124310573 A G OR8B8 Missense_Mutation p.S137P 0.25 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-CG-5723-01 11 124496862 124496862 T A TBRG1 Missense_Mutation p.S218R 0.28 deleterious(0) probably_damaging(0.999) TCGA-CG-5723-01 11 124618265 124618265 C - VSIG2 Intron 0.33 TCGA-CG-5723-01 11 124794736 124794736 G A HEPACAM Silent p.G105G 0.27 TCGA-CG-5723-01 11 125484229 125484229 C A STT3A Missense_Mutation p.S561Y 0.22 deleterious(0) probably_damaging(0.981) TCGA-CG-5723-01 11 126147409 126147409 T C FOXRED1 Missense_Mutation p.V429A 0.20 tolerated(0.74) benign(0.006) TCGA-CG-5723-01 11 126284042 126284042 A C ST3GAL4 3'UTR 0.19 TCGA-CG-5723-01 11 1263618 1263618 C T MUC5B Silent p.P1836P 0.22 TCGA-CG-5723-01 11 1272678 1272678 C T MUC5B Silent p.T4856T 0.27 TCGA-CG-5723-01 11 128842466 128842466 C T ARHGAP32 Missense_Mutation p.R1298H 0.26 tolerated_low_confidence(0.05) benign(0.009) TCGA-CG-5723-01 11 128846512 128846512 T C ARHGAP32 Missense_Mutation p.T700A 0.24 deleterious(0.03) benign(0.024) TCGA-CG-5723-01 11 128851443 128851443 C A ARHGAP32 Nonsense_Mutation p.E536* 0.26 TCGA-CG-5723-01 11 130060404 130060404 G A ST14 Silent p.T230T 0.37 TCGA-CG-5723-01 11 133791085 133791085 C T IGSF9B Silent p.T845T 0.20 TCGA-CG-5723-01 11 133794769 133794769 C T IGSF9B Missense_Mutation p.V689I 0.21 tolerated(0.1) benign(0.216) TCGA-CG-5723-01 11 13393835 13393835 G A ARNTL Missense_Mutation p.A315T 0.24 tolerated(0.11) benign(0.112) TCGA-CG-5723-01 11 134014848 134014848 C T JAM3 Missense_Mutation p.R191C 0.23 tolerated(0.18) benign(0.022) TCGA-CG-5723-01 11 134022911 134022911 G T NCAPD3 Silent p.P1475P 0.21 TCGA-CG-5723-01 11 134212847 134212847 T C GLB1L2 Splice_Site p.X95_splice 0.16 TCGA-CG-5723-01 11 1651724 1651725 - A KRTAP5-5 Frame_Shift_Ins p.P220Afs*17 0.28 TCGA-CG-5723-01 11 17428178 17428178 G A ABCC8 Missense_Mutation p.A1107V 0.27 deleterious(0.01) possibly_damaging(0.606) TCGA-CG-5723-01 11 17491700 17491700 G A ABCC8 Silent p.S120S 0.20 TCGA-CG-5723-01 11 17741819 17741819 C T MYOD1 Silent p.L164L 0.22 TCGA-CG-5723-01 11 18587900 18587900 T C UEVLD Missense_Mutation p.T163A 0.28 deleterious(0.03) benign(0.405) TCGA-CG-5723-01 11 22359946 22359946 G A SLC17A6 5'UTR 0.35 TCGA-CG-5723-01 11 26556078 26556078 C T ANO3 Silent p.R315R 0.22 TCGA-CG-5723-01 11 28134963 28134963 G A METTL15 Missense_Mutation p.V28I 0.24 tolerated_low_confidence(0.23) benign(0.001) TCGA-CG-5723-01 11 32410561 32410561 A C WT1 3'UTR 0.23 TCGA-CG-5723-01 11 33087459 33087459 C T TCP11L1 Silent p.V352V 0.25 TCGA-CG-5723-01 11 33308232 33308232 C T HIPK3 Missense_Mutation p.A91V 0.17 tolerated(0.18) probably_damaging(0.997) TCGA-CG-5723-01 11 33308858 33308858 C T HIPK3 Missense_Mutation p.R300W 0.16 deleterious(0) probably_damaging(1) TCGA-CG-5723-01 11 34129782 34129782 A - NAT10 Frame_Shift_Del p.K5Rfs*14 0.18 TCGA-CG-5723-01 11 34904909 34904909 C - APIP Frame_Shift_Del p.E202Kfs*23 0.22 TCGA-CG-5723-01 11 3712640 3712640 T G NUP98 Missense_Mutation p.E1464A 0.15 deleterious(0.02) benign(0.167) TCGA-CG-5723-01 11 3733808 3733808 C T NUP98 Missense_Mutation p.A910T 0.29 tolerated(0.41) benign(0.046) TCGA-CG-5723-01 11 4510535 4510535 G A OR52K1 Silent p.T135T 0.16 TCGA-CG-5723-01 11 45671376 45671376 G A CHST1 Silent p.Y366Y 0.20 TCGA-CG-5723-01 11 45671881 45671881 C T CHST1 Missense_Mutation p.R198H 0.21 tolerated(0.29) benign(0.007) TCGA-CG-5723-01 11 45949777 45949777 C T GYLTL1B Missense_Mutation p.R602W 0.16 deleterious(0) probably_damaging(0.999) TCGA-CG-5723-01 11 45949840 45949840 C T GYLTL1B Missense_Mutation p.P623S 0.19 tolerated(0.24) benign(0.042) TCGA-CG-5723-01 11 45967444 45967444 T C PHF21A Missense_Mutation p.T466A 0.21 tolerated(0.87) benign(0.033) TCGA-CG-5723-01 11 46702224 46702224 G - ARHGAP1 Frame_Shift_Del p.L237Cfs*135 0.36 TCGA-CG-5723-01 11 46837768 46837768 T G CKAP5 Missense_Mutation p.T147P 0.15 deleterious(0.01) probably_damaging(0.991) TCGA-CG-5723-01 11 47266285 47266285 C - ACP2 Splice_Site p.X258_splice 0.21 TCGA-CG-5723-01 11 47310991 47310991 C T MADD Silent p.S921S 0.23 TCGA-CG-5723-01 11 47726206 47726206 G A AGBL2 Missense_Mutation p.R159C 0.20 tolerated(0.06) benign(0.046) TCGA-CG-5723-01 11 48157734 48157734 T C PTPRJ Missense_Mutation p.Y587H 0.25 tolerated(0.54) benign(0.009) TCGA-CG-5723-01 11 49831725 49831725 A G RP11-707M1.1 RNA 0.22 TCGA-CG-5723-01 11 5290793 5290793 A G HBE1 Missense_Mutation p.L69P 0.18 deleterious(0) probably_damaging(1) TCGA-CG-5723-01 11 5474944 5474944 G A OR51I2 Missense_Mutation p.A76T 0.19 tolerated(0.12) benign(0.027) TCGA-CG-5723-01 11 55587205 55587205 G A OR5D18 Missense_Mutation p.A34T 0.25 tolerated(1) benign(0.002) TCGA-CG-5723-01 11 56000654 56000654 T C OR5T2 Missense_Mutation p.Y3C 0.18 deleterious_low_confidence(0) benign(0.129) TCGA-CG-5723-01 11 57004240 57004240 A G APLNR Missense_Mutation p.V80A 0.29 tolerated(0.14) benign(0.075) TCGA-CG-5723-01 11 57069355 57069355 G A TNKS1BP1 Missense_Mutation p.R1633W 0.15 deleterious(0) probably_damaging(0.999) TCGA-CG-5723-01 11 57095279 57095279 C A SSRP1 Missense_Mutation p.E563D 0.27 tolerated(0.2) benign(0.007) TCGA-CG-5723-01 11 57467412 57467412 G A ZDHHC5 Missense_Mutation p.G686D 0.23 deleterious(0.02) benign(0.036) TCGA-CG-5723-01 11 57995413 57995413 C T OR10Q1 Missense_Mutation p.R312H 0.22 tolerated(0.05) benign(0.001) TCGA-CG-5723-01 11 58893587 58893587 C T FAM111B Nonsense_Mutation p.R673* 0.29 TCGA-CG-5723-01 11 59559674 59559674 G A STX3 Missense_Mutation p.R151Q 0.25 deleterious(0) probably_damaging(0.992) TCGA-CG-5723-01 11 59629106 59629106 G A TCN1 Silent p.D150D 0.23 TCGA-CG-5723-01 11 60620738 60620738 A G PTGDR2 Missense_Mutation p.L153P 0.40 deleterious(0.02) possibly_damaging(0.765) TCGA-CG-5723-01 11 60695270 60695270 C T TMEM132A Missense_Mutation p.P158L 0.24 deleterious(0) probably_damaging(0.996) TCGA-CG-5723-01 11 60886386 60886386 G T CD5 Splice_Site p.X134_splice 0.26 TCGA-CG-5723-01 11 6129484 6129484 G A OR56B4 Missense_Mutation p.G159D 0.21 tolerated(0.12) possibly_damaging(0.71) TCGA-CG-5723-01 11 613969 613969 G C IRF7 Missense_Mutation p.P263A 0.45 tolerated(0.12) benign(0.028) TCGA-CG-5723-01 11 62186559 62186559 T C SCGB1A1 5'UTR 0.13 TCGA-CG-5723-01 11 62297658 62297658 C T AHNAK Missense_Mutation p.V1411I 0.24 benign(0.008) TCGA-CG-5723-01 11 62381962 62381962 A G ROM1 Missense_Mutation p.T275A 0.19 tolerated(0.06) probably_damaging(0.997) TCGA-CG-5723-01 11 62434242 62434242 C A METTL12 Missense_Mutation p.L148M 0.22 deleterious(0.03) probably_damaging(0.999) TCGA-CG-5723-01 11 62487636 62487636 G A HNRNPUL2 Missense_Mutation p.R547W 0.24 deleterious(0) probably_damaging(0.972) TCGA-CG-5723-01 11 62496515 62496515 C T TTC9C Silent p.N65N 0.17 TCGA-CG-5723-01 11 63137671 63137671 G A SLC22A9 Missense_Mutation p.R48H 0.21 deleterious(0.03) benign(0.087) TCGA-CG-5723-01 11 63487620 63487620 A - RTN3 Frame_Shift_Del p.T551Hfs*42 0.19 TCGA-CG-5723-01 11 63884234 63884234 C T FLRT1 Silent p.T165T 0.18 TCGA-CG-5723-01 11 63994403 63994403 C A NUDT22 Silent p.T93T 0.20 TCGA-CG-5723-01 11 64367852 64367852 G A SLC22A12 Silent p.L433L 0.25 TCGA-CG-5723-01 11 64427828 64427829 - C NRXN2 Frame_Shift_Ins p.Q789Afs*19 0.20 TCGA-CG-5723-01 11 64522768 64522768 G A PYGM Missense_Mutation p.R278C 0.21 deleterious(0) probably_damaging(1) TCGA-CG-5723-01 11 64572093 64572093 G - MEN1 Frame_Shift_Del p.R521Gfs*43 0.33 TCGA-CG-5723-01 11 64678286 64678286 T C ATG2A Missense_Mutation p.Y536C 0.24 deleterious(0.01) probably_damaging(0.99) TCGA-CG-5723-01 11 64695857 64695857 C T PPP2R5B Missense_Mutation p.R228W 0.21 deleterious(0) possibly_damaging(0.902) TCGA-CG-5723-01 11 65000741 65000741 C T SLC22A20 RNA 0.29 TCGA-CG-5723-01 11 65144119 65144119 C - SLC25A45 Frame_Shift_Del p.G209Afs*14 0.25 TCGA-CG-5723-01 11 65156922 65156922 G A FRMD8 Missense_Mutation p.R59H 0.30 tolerated(0.07) benign(0.002) TCGA-CG-5723-01 11 65321528 65321528 C T LTBP3 Missense_Mutation p.A219T 0.11 tolerated(0.34) possibly_damaging(0.577) TCGA-CG-5723-01 11 65396168 65396168 G A PCNXL3 Missense_Mutation p.V1269M 0.15 deleterious(0) possibly_damaging(0.82) TCGA-CG-5723-01 11 65486698 65486698 C A KAT5 3'UTR 0.13 TCGA-CG-5723-01 11 65688801 65688801 C - DRAP1 Frame_Shift_Del p.P173Rfs*45 0.31 TCGA-CG-5723-01 11 65810516 65810516 C T GAL3ST3 Missense_Mutation p.R253H 0.26 tolerated(1) benign(0.013) TCGA-CG-5723-01 11 65810617 65810617 G A GAL3ST3 Silent p.D219D 0.22 TCGA-CG-5723-01 11 66033656 66033656 G - KLC2 Frame_Shift_Del p.G567Afs*11 0.24 TCGA-CG-5723-01 11 67047323 67047323 A T ADRBK1 Missense_Mutation p.E152V 0.19 tolerated(0.34) benign(0.326) TCGA-CG-5723-01 11 67269822 67269822 C A PITPNM1 Missense_Mutation p.G119V 0.21 tolerated(0.07) benign(0.119) TCGA-CG-5723-01 11 6789985 6789986 GA - OR2AG2 Frame_Shift_Del p.L68Hfs*41 0.19 TCGA-CG-5723-01 11 68029489 68029490 TG - C11orf24 Frame_Shift_Del p.Q325Afs*25 0.25 TCGA-CG-5723-01 11 6913632 6913632 C T OR2D2 Missense_Mutation p.V34I 0.28 tolerated(1) benign(0.002) TCGA-CG-5723-01 11 70275243 70275244 GA - CTTN Frame_Shift_Del p.R336Sfs*49 0.16 TCGA-CG-5723-01 11 7111248 7111248 G A RBMXL2 Silent p.P299P 0.42 TCGA-CG-5723-01 11 71293184 71293184 C T KRTAP5-11 3'UTR 0.67 TCGA-CG-5723-01 11 71719794 71719794 T C NUMA1 Missense_Mutation p.D1719G 0.26 probably_damaging(0.999) TCGA-CG-5723-01 11 71720329 71720329 C T NUMA1 Silent p.E1608E 0.25 TCGA-CG-5723-01 11 72091323 72091323 A G CLPB Splice_Site p.X216_splice 0.25 TCGA-CG-5723-01 11 73681192 73681192 C A DNAJB13 3'UTR 0.30 TCGA-CG-5723-01 11 74415529 74415529 A G CHRDL2 Splice_Site p.X251_splice 0.24 TCGA-CG-5723-01 11 74417543 74417543 G T CHRDL2 Missense_Mutation p.L191I 0.23 tolerated(0.39) benign(0.085) TCGA-CG-5723-01 11 74688037 74688037 T C SPCS2 Silent p.P210P 0.13 TCGA-CG-5723-01 11 75115930 75115930 G - RPS3 Intron 0.19 TCGA-CG-5723-01 11 75852178 75852178 G A UVRAG Silent p.G607G 0.27 TCGA-CG-5723-01 11 76207359 76207359 A G C11orf30 Silent p.Q403Q 0.27 TCGA-CG-5723-01 11 76371656 76371656 A G LRRC32 Silent p.I327I 0.21 TCGA-CG-5723-01 11 76825332 76825332 A C CAPN5 Missense_Mutation p.D184A 0.18 deleterious(0) probably_damaging(1) TCGA-CG-5723-01 11 77090970 77090970 A G PAK1 Missense_Mutation p.V87A 0.20 deleterious(0) possibly_damaging(0.607) TCGA-CG-5723-01 11 78369013 78369013 A - TENM4 3'UTR 0.20 TCGA-CG-5723-01 11 78412977 78412977 G A TENM4 Missense_Mutation p.R1561W 0.20 deleterious(0) possibly_damaging(0.886) TCGA-CG-5723-01 11 78449566 78449566 G - TENM4 Frame_Shift_Del p.L936Wfs*4 0.24 TCGA-CG-5723-01 11 8496262 8496262 T - STK33 Frame_Shift_Del p.N64Ifs*6 0.21 TCGA-CG-5723-01 11 8969887 8969887 G A TMEM9B Missense_Mutation p.R193W 0.25 deleterious(0) probably_damaging(0.916) TCGA-CG-5723-01 11 93212394 93212394 T G SMCO4 5'UTR 0.16 TCGA-CG-5723-01 11 93837908 93837908 G C HEPHL1 Missense_Mutation p.R966T 0.25 deleterious(0.01) benign(0.065) TCGA-CG-5723-01 11 94231221 94231221 T - ANKRD49 Intron 0.29 TCGA-CG-5723-01 11 94759423 94759423 C A KDM4E Silent p.G234G 0.19 TCGA-CG-5723-01 11 9501082 9501082 A - ZNF143 Frame_Shift_Del p.M214Cfs*12 0.20 TCGA-CG-5723-01 12 101736764 101736764 G A UTP20 Missense_Mutation p.V1448I 0.21 tolerated(0.09) benign(0.006) TCGA-CG-5723-01 12 101880330 101880330 C T SPIC Silent p.Y176Y 0.33 TCGA-CG-5723-01 12 1025516 1025516 T C RAD52 Missense_Mutation p.S287G 0.21 tolerated(0.14) benign(0.028) TCGA-CG-5723-01 12 104044321 104044321 C A STAB2 Missense_Mutation p.L408M 0.18 deleterious(0.02) probably_damaging(0.978) TCGA-CG-5723-01 12 104071360 104071360 G A STAB2 Missense_Mutation p.A926T 0.11 deleterious(0) probably_damaging(0.998) TCGA-CG-5723-01 12 10573125 10588563 12:10573125-10588563 - KLRC2 large deletion 0.09 TCGA-CG-5723-01 12 10588561 10588563 AGA - KLRC2 In_Frame_Del p.F8del 0.12 TCGA-CG-5723-01 12 106532257 106532257 C A NUAK1 Nonsense_Mutation p.E59* 0.19 TCGA-CG-5723-01 12 110206229 110206229 G A FAM222A Silent p.A165A 0.25 TCGA-CG-5723-01 12 110206380 110206380 G A FAM222A Missense_Mutation p.A216T 0.26 tolerated(0.32) benign(0.126) TCGA-CG-5723-01 12 110340853 110340853 T C TCHP Missense_Mutation p.S8P 0.19 tolerated(0.33) benign(0.01) TCGA-CG-5723-01 12 110421431 110421431 T G GIT2 Missense_Mutation p.Q158H 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-CG-5723-01 12 110783139 110783139 T C ATP2A2 Missense_Mutation p.M898T 0.24 deleterious(0) probably_damaging(0.958) TCGA-CG-5723-01 12 110929816 110929816 T - VPS29 Frame_Shift_Del p.K185Nfs*19 0.18 TCGA-CG-5723-01 12 110943485 110943485 T - RAD9B Frame_Shift_Del p.Q63Sfs*8 0.25 TCGA-CG-5723-01 12 111358330 111358330 C T MYL2 Splice_Site p.X1_splice 0.17 TCGA-CG-5723-01 12 112185167 112185167 C T ACAD10 Silent p.N852N 0.25 TCGA-CG-5723-01 12 112460088 112460088 G A ERP29 Missense_Mutation p.A140T 0.21 tolerated(0.38) possibly_damaging(0.684) TCGA-CG-5723-01 12 113906172 113906172 G A LHX5 Silent p.L145L 0.21 TCGA-CG-5723-01 12 11420746 11420746 G - PRB3 Frame_Shift_Del p.P146Hfs*174 0.11 TCGA-CG-5723-01 12 114841604 114841604 C - TBX5 Frame_Shift_Del p.A34Pfs*32 0.22 TCGA-CG-5723-01 12 116408482 116408482 T C MED13L Missense_Mutation p.H1995R 0.22 deleterious(0) probably_damaging(0.994) TCGA-CG-5723-01 12 117494684 117494684 T C TESC Missense_Mutation p.N46D 0.25 tolerated(0.47) benign(0.006) TCGA-CG-5723-01 12 117672429 117672429 G A NOS1 Missense_Mutation p.A1093V 0.28 tolerated(0.18) benign(0.01) TCGA-CG-5723-01 12 118474213 118474213 C T WSB2 Missense_Mutation p.V255I 0.13 tolerated(0.27) benign(0.11) TCGA-CG-5723-01 12 121014614 121014614 G T RNF10 3'UTR 0.20 TCGA-CG-5723-01 12 121951203 121951203 C T KDM2B Silent p.V350V 0.23 TCGA-CG-5723-01 12 123055441 123055441 T C KNTC1 Silent p.L627L 0.27 TCGA-CG-5723-01 12 123087620 123087620 A - KNTC1 Frame_Shift_Del p.K1646Nfs*2 0.33 TCGA-CG-5723-01 12 123214828 123214828 G A HCAR1 Missense_Mutation p.P20L 0.16 deleterious(0) possibly_damaging(0.677) TCGA-CG-5723-01 12 123253718 123253718 T C DENR 3'UTR 0.45 TCGA-CG-5723-01 12 124081421 124081421 A - TMED2 3'UTR 0.14 TCGA-CG-5723-01 12 124106442 124106442 G A EIF2B1 Missense_Mutation p.A260V 0.25 tolerated(0.37) benign(0.001) TCGA-CG-5723-01 12 124209219 124209219 G A ATP6V0A2 Missense_Mutation p.E105K 0.26 deleterious(0) probably_damaging(0.911) TCGA-CG-5723-01 12 124421711 124421711 T G CCDC92 Missense_Mutation p.H297P 0.23 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-CG-5723-01 12 125294823 125294823 G A SCARB1 Missense_Mutation p.H247Y 0.21 deleterious(0.05) possibly_damaging(0.499) TCGA-CG-5723-01 12 125449022 125449024 AGG - DHX37 In_Frame_Del p.S654del 0.20 TCGA-CG-5723-01 12 12917591 12917591 C T APOLD1 Intron 0.17 TCGA-CG-5723-01 12 130648515 130648515 G A FZD10 Missense_Mutation p.G343D 0.31 deleterious(0) probably_damaging(1) TCGA-CG-5723-01 12 131451073 131451073 C T GPR133 Missense_Mutation p.L57F 0.12 tolerated_low_confidence(0.22) benign(0.224) TCGA-CG-5723-01 12 13238096 13238096 G T GSG1 Missense_Mutation p.F253L 0.28 deleterious(0.02) probably_damaging(0.98) TCGA-CG-5723-01 12 132393458 132393458 C T ULK1 Missense_Mutation p.A169V 0.10 deleterious(0) probably_damaging(0.998) TCGA-CG-5723-01 12 133733098 133733098 G A ZNF10 Silent p.V422V 0.04 TCGA-CG-5723-01 12 18890366 18890366 T C PLCZ1 5'UTR 0.19 TCGA-CG-5723-01 12 19427575 19427575 A - PLEKHA5 Frame_Shift_Del p.K326Rfs*3 0.19 TCGA-CG-5723-01 12 20522723 20522723 G - PDE3A Frame_Shift_Del p.E171Kfs*36 0.26 TCGA-CG-5723-01 12 20766556 20766556 C T PDE3A Silent p.P397P 0.22 TCGA-CG-5723-01 12 21448696 21448696 C T SLCO1A2 Missense_Mutation p.G369E 0.22 deleterious(0) probably_damaging(1) TCGA-CG-5723-01 12 21693395 21693395 C T GYS2 Silent p.R586R 0.20 TCGA-CG-5723-01 12 22354586 22354586 A G ST8SIA1 Missense_Mutation p.M324T 0.22 deleterious(0.03) probably_damaging(0.997) TCGA-CG-5723-01 12 26572040 26572040 G A ITPR2 Missense_Mutation p.A2351V 0.26 tolerated(0.75) benign(0.01) TCGA-CG-5723-01 12 2705039 2705039 G T CACNA1C Splice_Site p.X888_splice 0.17 TCGA-CG-5723-01 12 27113500 27113500 G A FGFR1OP2 Missense_Mutation p.R150Q 0.20 tolerated_low_confidence(0.41) benign(0.001) TCGA-CG-5723-01 12 2968136 2968136 G - FOXM1 Frame_Shift_Del p.L692Wfs*3 0.19 TCGA-CG-5723-01 12 31254802 31254802 C T DDX11 Silent p.C696C 0.24 TCGA-CG-5723-01 12 32138395 32138395 G A KIAA1551 Silent p.V1502V 0.24 TCGA-CG-5723-01 12 32777363 32777363 C T FGD4 Nonsense_Mutation p.Q507* 0.26 TCGA-CG-5723-01 12 416792 416792 G A KDM5A Missense_Mutation p.A1253V 0.22 deleterious(0) probably_damaging(0.95) TCGA-CG-5723-01 12 42555564 42555564 T - YAF2 Frame_Shift_Del p.K76Nfs*31 0.18 TCGA-CG-5723-01 12 43837660 43837660 C T ADAMTS20 Missense_Mutation p.A742T 0.22 tolerated(0.18) benign(0.031) TCGA-CG-5723-01 12 443551 443551 G A KDM5A Missense_Mutation p.P449L 0.19 deleterious(0) probably_damaging(0.924) TCGA-CG-5723-01 12 44782314 44782314 C T TMEM117 Silent p.C468C 0.17 TCGA-CG-5723-01 12 46211569 46211569 G A ARID2 Missense_Mutation p.V179I 0.18 deleterious(0.03) probably_damaging(0.985) TCGA-CG-5723-01 12 46315709 46315709 A - SCAF11 3'UTR 0.20 TCGA-CG-5723-01 12 46322307 46322307 A G SCAF11 Missense_Mutation p.S393P 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-CG-5723-01 12 47628998 47628998 G - PCED1B Frame_Shift_Del p.E53Sfs*2 0.22 TCGA-CG-5723-01 12 48501948 48501948 C T PFKM Missense_Mutation p.T59I 0.20 tolerated(0.36) benign(0.004) TCGA-CG-5723-01 12 48577859 48577859 C G C12orf68 5'UTR 0.20 TCGA-CG-5723-01 12 48737327 48737327 G C ZNF641 Nonsense_Mutation p.S249* 0.21 TCGA-CG-5723-01 12 49225894 49225894 G A DDX23 Silent p.C677C 0.18 TCGA-CG-5723-01 12 49412461 49412461 G - PRKAG1 Intron 0.34 TCGA-CG-5723-01 12 49431874 49431874 C - KMT2D Frame_Shift_Del p.V3089Wfs*30 0.17 TCGA-CG-5723-01 12 49434005 49434005 G - KMT2D Frame_Shift_Del p.N2517Ifs*26 0.17 TCGA-CG-5723-01 12 49434444 49434444 C T KMT2D Missense_Mutation p.R2370H 0.13 probably_damaging(0.985) TCGA-CG-5723-01 12 49434492 49434492 G - KMT2D Frame_Shift_Del p.P2354Lfs*30 0.21 TCGA-CG-5723-01 12 49722991 49722991 G A TROAP Silent p.R356R 0.10 TCGA-CG-5723-01 12 49937067 49937067 G A KCNH3 Missense_Mutation p.G197R 0.31 tolerated(0.28) possibly_damaging(0.84) TCGA-CG-5723-01 12 50369362 50369362 G A AQP6 Missense_Mutation p.V253I 0.31 tolerated(0.38) benign(0.011) TCGA-CG-5723-01 12 50794705 50794705 G A LARP4 5'UTR 0.23 TCGA-CG-5723-01 12 51844755 51844755 C T SLC4A8 Missense_Mutation p.R76W 0.42 deleterious(0) possibly_damaging(0.507) TCGA-CG-5723-01 12 53044214 53044214 T C KRT2 Missense_Mutation p.K237E 0.20 deleterious(0) possibly_damaging(0.718) TCGA-CG-5723-01 12 53295004 53295004 C A KRT8 Splice_Site p.X206_splice 0.21 TCGA-CG-5723-01 12 53722463 53722463 C T SP7 Missense_Mutation p.G255R 0.22 tolerated(0.07) benign(0.326) TCGA-CG-5723-01 12 53776718 53776718 T C SP1 Silent p.T329T 0.23 TCGA-CG-5723-01 12 55039010 55039010 C - DCD Frame_Shift_Del p.G79Dfs*5 0.18 TCGA-CG-5723-01 12 55759486 55759486 T - OR6C75 Frame_Shift_Del p.L200* 0.46 TCGA-CG-5723-01 12 57537482 57537482 C T LRP1 Missense_Mutation p.R117C 0.20 benign(0.115) TCGA-CG-5723-01 12 57577935 57577935 C A LRP1 Silent p.R1999R 0.31 TCGA-CG-5723-01 12 57602495 57602495 A G LRP1 Missense_Mutation p.T4014A 0.20 benign(0.438) TCGA-CG-5723-01 12 57627077 57627077 G - SHMT2 Frame_Shift_Del p.G326Afs*10 0.20 TCGA-CG-5723-01 12 57860075 57860075 G - GLI1 Frame_Shift_Del p.G274Afs*6 0.27 TCGA-CG-5723-01 12 57920916 57920916 T - MBD6 Frame_Shift_Del p.F664Sfs*11 0.34 TCGA-CG-5723-01 12 58124639 58124639 C - AGAP2 Frame_Shift_Del p.G748Afs*13 0.30 TCGA-CG-5723-01 12 58124646 58124646 C T AGAP2 Missense_Mutation p.A746T 0.24 tolerated(0.16) probably_damaging(0.978) TCGA-CG-5723-01 12 58174183 58174183 C T METTL21B Silent p.D145D 0.29 TCGA-CG-5723-01 12 6128544 6128544 A G VWF Missense_Mutation p.V1347A 0.23 deleterious(0) benign(0.024) TCGA-CG-5723-01 12 62786091 62786091 A - USP15 Frame_Shift_Del p.K783Nfs*4 0.16 TCGA-CG-5723-01 12 62943525 62943525 G A MON2 Missense_Mutation p.C944Y 0.22 deleterious(0.03) probably_damaging(0.925) TCGA-CG-5723-01 12 63195794 63195794 G A PPM1H Silent p.V186V 0.16 TCGA-CG-5723-01 12 6427575 6427575 C T PLEKHG6 Nonsense_Mutation p.R422* 0.32 TCGA-CG-5723-01 12 65113872 65113872 T C GNS Missense_Mutation p.N504D 0.25 tolerated(0.12) benign(0.068) TCGA-CG-5723-01 12 6574049 6574052 TACT - VAMP1 Intron 0.24 TCGA-CG-5723-01 12 66839111 66839111 G - GRIP1 Frame_Shift_Del p.P459Qfs*14 0.23 TCGA-CG-5723-01 12 67692780 67692780 T C CAND1 Missense_Mutation p.L302P 0.21 deleterious(0) probably_damaging(0.943) TCGA-CG-5723-01 12 6934773 6934773 G A GPR162 Missense_Mutation p.R331H 0.50 deleterious(0) probably_damaging(0.982) TCGA-CG-5723-01 12 6935968 6935968 C A GPR162 Missense_Mutation p.L456M 0.27 tolerated_low_confidence(0.23) benign(0.302) TCGA-CG-5723-01 12 70913969 70913969 T A PTPRB 3'UTR 0.20 TCGA-CG-5723-01 12 71531789 71531789 C T TSPAN8 Missense_Mutation p.A130T 0.23 tolerated(0.46) benign(0.009) TCGA-CG-5723-01 12 7169970 7169970 C T C1S Missense_Mutation p.A66V 0.22 deleterious(0.01) benign(0.265) TCGA-CG-5723-01 12 7242010 7242010 G - C1R Frame_Shift_Del p.P215Lfs*100 0.31 TCGA-CG-5723-01 12 73057028 73057028 G A TRHDE 3'UTR 0.27 TCGA-CG-5723-01 12 7984225 7984225 C T SLC2A14 Missense_Mutation p.G106R 0.21 deleterious(0.03) probably_damaging(0.933) TCGA-CG-5723-01 12 8374755 8374755 G A FAM90A1 Missense_Mutation p.P353L 0.29 tolerated(0.33) benign(0.343) TCGA-CG-5723-01 12 85285889 85285889 T - SLC6A15 Frame_Shift_Del p.N4Ifs*5 0.18 TCGA-CG-5723-01 12 94562942 94562942 A G PLXNC1 Missense_Mutation p.Q359R 0.23 tolerated(0.68) benign(0) TCGA-CG-5723-01 12 95650969 95650969 T - VEZT Frame_Shift_Del p.S74Lfs*38 0.28 TCGA-CG-5723-01 12 989023 989023 G - WNK1 Frame_Shift_Del p.V888Yfs*16 0.24 TCGA-CG-5723-01 12 99126270 99126270 G A APAF1 Missense_Mutation p.V1225M 0.23 deleterious(0.01) possibly_damaging(0.79) TCGA-CG-5723-01 13 103436732 103436732 A C KDELC1 3'UTR 0.21 TCGA-CG-5723-01 13 107822998 107822998 T C FAM155A Silent p.S408S 0.20 TCGA-CG-5723-01 13 110838821 110838821 G - COL4A1 Frame_Shift_Del p.P603Lfs*199 0.31 TCGA-CG-5723-01 13 111953116 111953116 C T ARHGEF7 Missense_Mutation p.P562L 0.21 tolerated(0.1) benign(0.023) TCGA-CG-5723-01 13 114117175 114117175 T C DCUN1D2 Intron 0.36 TCGA-CG-5723-01 13 25457398 25457398 C T CENPJ Missense_Mutation p.G1312S 0.21 deleterious(0) probably_damaging(1) TCGA-CG-5723-01 13 28136599 28136599 C A LNX2 Missense_Mutation p.G392V 0.26 deleterious(0) probably_damaging(0.984) TCGA-CG-5723-01 13 28636133 28636133 G A FLT3 Missense_Mutation p.A80V 0.29 tolerated(0.22) benign(0.001) TCGA-CG-5723-01 13 29008007 29008007 A G FLT1 Silent p.A254A 0.20 TCGA-CG-5723-01 13 29275609 29275609 T - SLC46A3 Intron 0.24 TCGA-CG-5723-01 13 29286951 29286951 A - SLC46A3 Frame_Shift_Del p.L309* 0.21 TCGA-CG-5723-01 13 29287374 29287374 C T SLC46A3 Missense_Mutation p.R168Q 0.30 deleterious(0.03) probably_damaging(0.998) TCGA-CG-5723-01 13 32868578 32868578 A G FRY Missense_Mutation p.D2885G 0.23 tolerated(0.31) benign(0.001) TCGA-CG-5723-01 13 32972903 32972903 T G BRCA2 Missense_Mutation p.I3418S 0.27 deleterious_low_confidence(0.01) benign(0.005) TCGA-CG-5723-01 13 36900787 36900787 A G SPG20 Missense_Mutation p.C405R 0.18 tolerated(0.11) benign(0.078) TCGA-CG-5723-01 13 37453967 37453967 G A SMAD9 5'UTR 0.50 TCGA-CG-5723-01 13 39603448 39603448 T G PROSER1 Missense_Mutation p.D82A 0.18 deleterious(0) probably_damaging(0.993) TCGA-CG-5723-01 13 41379273 41379273 G A SLC25A15 Missense_Mutation p.A112T 0.31 deleterious(0) probably_damaging(0.962) TCGA-CG-5723-01 13 41705324 41767068 13:41705324-41767068 - KBTBD6 large deletion 0.11 TCGA-CG-5723-01 13 41827154 41827154 G T MTRF1 Missense_Mutation p.L174I 0.05 deleterious(0.04) benign(0.319) TCGA-CG-5723-01 13 41943362 41943362 A T NAA16 Missense_Mutation p.E630D 0.25 tolerated(1) benign(0.001) TCGA-CG-5723-01 13 43362944 43362944 A G FAM216B 3'UTR 0.21 TCGA-CG-5723-01 13 45980026 45980026 C T SLC25A30 Missense_Mutation p.R100H 0.14 tolerated(0.24) benign(0.003) TCGA-CG-5723-01 13 48919235 48919235 T G RB1 Missense_Mutation p.L134V 0.22 tolerated(0.25) possibly_damaging(0.593) TCGA-CG-5723-01 13 51936041 51936041 T - SERPINE3 Frame_Shift_Del p.F396Lfs*6 0.21 TCGA-CG-5723-01 13 52602510 52602510 C T ALG11 Silent p.G421G 0.21 TCGA-CG-5723-01 13 58208186 58208186 C G PCDH17 Silent p.G502G 0.25 TCGA-CG-5723-01 13 58208609 58208609 C T PCDH17 Silent p.G643G 0.12 TCGA-CG-5723-01 13 72146986 72146986 T C DACH1 Missense_Mutation p.T431A 0.20 benign(0.051) TCGA-CG-5723-01 13 75901914 75901914 G A TBC1D4 Missense_Mutation p.R594W 0.27 deleterious(0) possibly_damaging(0.893) TCGA-CG-5723-01 13 76179898 76179898 C T UCHL3 Missense_Mutation p.R215C 0.24 deleterious(0) probably_damaging(0.997) TCGA-CG-5723-01 13 77641917 77641917 G - MYCBP2 Frame_Shift_Del p.P4047Qfs*26 0.25 TCGA-CG-5723-01 13 95131528 95131529 - CT DCT 5'UTR 0.31 TCGA-CG-5723-01 13 95735432 95735432 A - ABCC4 Frame_Shift_Del p.L883Wfs*7 0.22 TCGA-CG-5723-01 13 96443359 96443359 A - DNAJC3 3'UTR 0.16 TCGA-CG-5723-01 13 98641389 98641389 A G IPO5 Silent p.G164G 0.05 TCGA-CG-5723-01 13 99092476 99092476 C - FARP1 Frame_Shift_Del p.P874Lfs*20 0.33 TCGA-CG-5723-01 13 99853696 99853696 T - UBAC2 Intron 0.19 TCGA-CG-5723-01 14 100820838 100820838 C - WARS Frame_Shift_Del p.G163Afs*9 0.26 TCGA-CG-5723-01 14 101488429 101488429 C T MIR379 RNA 0.19 TCGA-CG-5723-01 14 102028223 102028223 C T DIO3 Silent p.H130H 0.12 TCGA-CG-5723-01 14 102802052 102802052 T - ZNF839 Frame_Shift_Del p.F514Sfs*36 0.08 TCGA-CG-5723-01 14 102910059 102910059 G A TECPR2 Missense_Mutation p.R943Q 0.13 tolerated(0.06) benign(0.008) TCGA-CG-5723-01 14 104208418 104208418 G - PPP1R13B Frame_Shift_Del p.Q511Sfs*39 0.30 TCGA-CG-5723-01 14 105174185 105174185 C - INF2 Frame_Shift_Del p.V530Wfs*28 0.40 TCGA-CG-5723-01 14 106405782 106405782 C T IGHV6-1 Silent p.S64S 0.20 TCGA-CG-5723-01 14 106452853 106452853 G A IGHV1-2 Nonsense_Mutation p.R57* 0.24 TCGA-CG-5723-01 14 106586346 106586346 T C IGHV3-13 Missense_Mutation p.T47A 0.17 deleterious_low_confidence(0.04) benign(0.109) TCGA-CG-5723-01 14 19553815 19553815 C A POTEG Nonsense_Mutation p.Y133* 0.06 TCGA-CG-5723-01 14 20248598 20248598 A G OR4M1 Silent p.L39L 0.13 TCGA-CG-5723-01 14 20443718 20443718 A C OR4K15 Missense_Mutation p.Q14P 0.23 tolerated_low_confidence(0.11) benign(0.047) TCGA-CG-5723-01 14 20915437 20915437 A G OSGEP Missense_Mutation p.Y324H 0.23 deleterious(0) possibly_damaging(0.865) TCGA-CG-5723-01 14 21167799 21167799 T C RNASE4 Missense_Mutation p.I90T 0.23 tolerated(0.06) benign(0.409) TCGA-CG-5723-01 14 21762941 21762942 - T RPGRIP1 Frame_Shift_Ins p.W65Lfs*6 0.26 TCGA-CG-5723-01 14 21862288 21862288 C T CHD8 Missense_Mutation p.R1889H 0.28 deleterious(0) probably_damaging(0.991) TCGA-CG-5723-01 14 21868764 21868764 G A CHD8 Nonsense_Mutation p.R1460* 0.32 TCGA-CG-5723-01 14 21896123 21896123 G A CHD8 Silent p.R502R 0.21 TCGA-CG-5723-01 14 22592119 22592119 A - TRAV26-1 Frame_Shift_Del p.N70Tfs*10 0.30 TCGA-CG-5723-01 14 22675954 22675954 A C TRAV34 Missense_Mutation p.K89T 0.25 deleterious(0.03) benign(0.366) TCGA-CG-5723-01 14 23652029 23652029 C - SLC7A8 Frame_Shift_Del p.G32Afs*3 0.18 TCGA-CG-5723-01 14 23794525 23794525 A - BCL2L2-PABPN1 3'UTR 0.13 TCGA-CG-5723-01 14 23885266 23885266 G A MYH7 Missense_Mutation p.R1634C 0.22 deleterious(0.02) probably_damaging(0.997) TCGA-CG-5723-01 14 24040254 24040254 C T JPH4 Silent p.T562T 0.24 TCGA-CG-5723-01 14 24569596 24569596 A C PCK2 Intron 0.29 TCGA-CG-5723-01 14 24572402 24572402 G A PCK2 Missense_Mutation p.R469H 0.23 deleterious(0.02) possibly_damaging(0.797) TCGA-CG-5723-01 14 24607881 24607881 G T PSME1 3'UTR 0.32 TCGA-CG-5723-01 14 24617593 24617593 C A RNF31 Missense_Mutation p.L156I 0.21 deleterious(0) probably_damaging(0.996) TCGA-CG-5723-01 14 24806443 24806443 T C RIPK3 Missense_Mutation p.Q375R 0.23 tolerated(0.07) possibly_damaging(0.677) TCGA-CG-5723-01 14 24846139 24846139 A G NFATC4 Missense_Mutation p.H962R 0.31 deleterious_low_confidence(0) benign(0.402) TCGA-CG-5723-01 14 28733889 28733890 - A BNIP3P1 RNA 0.22 TCGA-CG-5723-01 14 31348147 31348147 A G COCH Missense_Mutation p.T124A 0.16 tolerated(0.28) benign(0) TCGA-CG-5723-01 14 35253125 35253125 T - BAZ1A Frame_Shift_Del p.M614* 0.20 TCGA-CG-5723-01 14 51225270 51225270 A G NIN Silent p.T826T 0.18 TCGA-CG-5723-01 14 55411081 55411081 C T WDHD1 Missense_Mutation p.R1053Q 0.20 tolerated(0.06) benign(0.311) TCGA-CG-5723-01 14 55510977 55510977 C T SOCS4 Silent p.I406I 0.23 TCGA-CG-5723-01 14 55818441 55818441 C T FBXO34 Nonsense_Mutation p.R445* 0.23 TCGA-CG-5723-01 14 55818654 55818654 G - FBXO34 Frame_Shift_Del p.G517Vfs*68 0.22 TCGA-CG-5723-01 14 55836623 55836623 C T ATG14 Missense_Mutation p.R398Q 0.08 tolerated(0.12) benign(0.048) TCGA-CG-5723-01 14 57052563 57052563 C T TMEM260 Missense_Mutation p.R93C 0.21 deleterious(0) probably_damaging(0.996) TCGA-CG-5723-01 14 57271049 57271049 G - OTX2 Frame_Shift_Del p.R44Gfs*15 0.28 TCGA-CG-5723-01 14 59014534 59014534 C - KIAA0586 Frame_Shift_Del p.C1594Afs*37 0.25 TCGA-CG-5723-01 14 64694215 64694215 A G SYNE2 3'Flank 0.24 TCGA-CG-5723-01 14 65054921 65054921 C T PPP1R36 Silent p.N330N 0.25 TCGA-CG-5723-01 14 65208796 65208796 T C PLEKHG3 Missense_Mutation p.L798P 0.17 deleterious(0) probably_damaging(0.999) TCGA-CG-5723-01 14 65520041 65520041 G A FNTB Silent p.A347A 0.33 TCGA-CG-5723-01 14 68151878 68151878 T C RDH11 Silent p.Q236Q 0.20 TCGA-CG-5723-01 14 68215124 68215124 C T ZFYVE26 3'UTR 0.30 TCGA-CG-5723-01 14 71200020 71200020 C T MAP3K9 Missense_Mutation p.R703H 0.20 tolerated(0.15) benign(0.004) TCGA-CG-5723-01 14 73554751 73554751 G A RBM25 Missense_Mutation p.R142H 0.16 probably_damaging(0.992) TCGA-CG-5723-01 14 74514756 74514756 T C CCDC176 Silent p.H257H 0.12 TCGA-CG-5723-01 14 74995349 74995349 G A LTBP2 Silent p.S735S 0.32 TCGA-CG-5723-01 14 75265268 75265268 C T YLPM1 Missense_Mutation p.R1090W 0.24 probably_damaging(0.995) TCGA-CG-5723-01 14 75643173 75643173 G A TMED10 Missense_Mutation p.P37L 0.18 tolerated(0.07) probably_damaging(0.925) TCGA-CG-5723-01 14 78183975 78183975 T C SNW1 3'UTR 0.20 TCGA-CG-5723-01 14 80328296 80328296 T C NRXN3 Missense_Mutation p.Y1059H 0.24 deleterious(0) benign(0.001) TCGA-CG-5723-01 14 81610228 81610228 G A TSHR Missense_Mutation p.R609Q 0.20 tolerated(0.29) probably_damaging(0.951) TCGA-CG-5723-01 14 86088134 86088134 G A FLRT2 Silent p.T92T 0.23 TCGA-CG-5723-01 14 88945665 88945665 C A PTPN21 Missense_Mutation p.A704S 0.17 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-CG-5723-01 14 90429630 90429630 A G TDP1 Missense_Mutation p.R58G 0.25 deleterious_low_confidence(0.03) possibly_damaging(0.627) TCGA-CG-5723-01 14 91925064 91925064 T - SMEK1 3'UTR 0.10 TCGA-CG-5723-01 14 93761193 93761193 T - BTBD7 Frame_Shift_Del p.K58Rfs*44 0.25 TCGA-CG-5723-01 14 95583999 95583999 C T DICER1 Missense_Mutation p.R490H 0.22 tolerated(0.16) probably_damaging(0.997) TCGA-CG-5723-01 14 99641079 99641079 G A BCL11B Silent p.P698P 0.12 TCGA-CG-5723-01 14 99723922 99723922 C T BCL11B Missense_Mutation p.E105K 0.23 tolerated(0.06) benign(0.001) TCGA-CG-5723-01 15 101569367 101569367 C T LRRK1 Nonsense_Mutation p.Q965* 0.22 TCGA-CG-5723-01 15 101606891 101606891 G A LRRK1 Missense_Mutation p.A1939T 0.21 tolerated(0.67) benign(0.001) TCGA-CG-5723-01 15 101717648 101717648 T - CHSY1 Frame_Shift_Del p.N785Mfs*15 0.20 TCGA-CG-5723-01 15 101821975 101821975 T C SNRPA1 Missense_Mutation p.D241G 0.18 tolerated(0.21) benign(0.104) TCGA-CG-5723-01 15 23014510 23014510 G C NIPA2 Missense_Mutation p.A72G 0.21 deleterious(0) probably_damaging(0.965) TCGA-CG-5723-01 15 23890346 23890346 C T MAGEL2 Silent p.S245S 0.20 TCGA-CG-5723-01 15 25453173 25453173 T C SNORD115-22 5'Flank 0.24 TCGA-CG-5723-01 15 25458718 25458718 G A SNORD115-22 3'Flank 0.23 TCGA-CG-5723-01 15 25474162 25474162 A - SNORD115-32 RNA 0.20 TCGA-CG-5723-01 15 28408251 28408251 C T HERC2 Missense_Mutation p.A3579T 0.36 benign(0.041) TCGA-CG-5723-01 15 28525215 28525215 T - HERC2 Frame_Shift_Del p.S181Vfs*85 0.21 TCGA-CG-5723-01 15 30011319 30011319 G A TJP1 Silent p.P1009P 0.27 TCGA-CG-5723-01 15 32928170 32928170 T - ARHGAP11A Intron 0.19 TCGA-CG-5723-01 15 33831643 33831643 G A RYR3 Missense_Mutation p.V176M 0.21 possibly_damaging(0.7) TCGA-CG-5723-01 15 33988594 33988594 C T RYR3 Silent p.S2012S 0.25 TCGA-CG-5723-01 15 34145782 34145782 C T RYR3 Silent p.Y4566Y 0.23 TCGA-CG-5723-01 15 34158800 34158800 T - AVEN 3'UTR 0.35 TCGA-CG-5723-01 15 34445071 34445071 T C KATNBL1 Missense_Mutation p.T120A 0.05 tolerated(0.72) benign(0.01) TCGA-CG-5723-01 15 34531353 34531353 C T SLC12A6 Silent p.K815K 0.21 TCGA-CG-5723-01 15 37187361 37187361 G A MEIS2 Missense_Mutation p.R380W 0.22 deleterious(0) probably_damaging(0.995) TCGA-CG-5723-01 15 39875834 39875834 T C THBS1 Missense_Mutation p.V215A 0.20 deleterious(0.01) benign(0.444) TCGA-CG-5723-01 15 40018788 40018788 A G FSIP1 Splice_Site p.X350_splice 0.14 TCGA-CG-5723-01 15 40509657 40509657 G A BUB1B Intron 0.21 TCGA-CG-5723-01 15 40683717 40683717 T G KNSTRN Missense_Mutation p.S237A 0.22 tolerated(0.28) benign(0.013) TCGA-CG-5723-01 15 41146715 41146715 A - SPINT1 Frame_Shift_Del p.K371Nfs*82 0.20 TCGA-CG-5723-01 15 41247781 41247781 G A CHAC1 Missense_Mutation p.A202T 0.21 tolerated(0.5) benign(0.388) TCGA-CG-5723-01 15 43299296 43299296 T - UBR1 Frame_Shift_Del p.K1132Nfs*3 0.27 TCGA-CG-5723-01 15 44876193 44876193 A G SPG11 Silent p.S1895S 0.07 TCGA-CG-5723-01 15 45365755 45365755 A C SORD 3'UTR 0.27 TCGA-CG-5723-01 15 45386840 45386840 G A DUOX2 Missense_Mutation p.T1482M 0.27 deleterious(0) probably_damaging(1) TCGA-CG-5723-01 15 45444515 45444515 C T DUOX1 Silent p.I1075I 0.24 TCGA-CG-5723-01 15 48459562 48459562 G A MYEF2 Missense_Mutation p.A136V 0.22 deleterious(0.01) possibly_damaging(0.804) TCGA-CG-5723-01 15 49304949 49304949 G A SECISBP2L Missense_Mutation p.P543S 0.20 tolerated(0.13) benign(0.005) TCGA-CG-5723-01 15 49493385 49493385 A G GALK2 Missense_Mutation p.N27S 0.17 tolerated(0.58) benign(0.01) TCGA-CG-5723-01 15 50215592 50215592 G A ATP8B4 Missense_Mutation p.T581M 0.20 deleterious(0) probably_damaging(0.985) TCGA-CG-5723-01 15 52194210 52194210 C T TMOD3 Missense_Mutation p.A334V 0.22 deleterious(0.01) possibly_damaging(0.601) TCGA-CG-5723-01 15 52201131 52201131 T - TMOD3 3'UTR 0.48 TCGA-CG-5723-01 15 52628675 52628675 T - MYO5A Frame_Shift_Del p.I1440Lfs*4 0.11 TCGA-CG-5723-01 15 52662454 52662454 G A MYO5A Missense_Mutation p.A993V 0.24 tolerated(0.07) benign(0.014) TCGA-CG-5723-01 15 53081384 53081384 T C ONECUT1 Missense_Mutation p.H233R 0.24 tolerated(0.08) probably_damaging(0.922) TCGA-CG-5723-01 15 53907708 53907708 C G WDR72 Missense_Mutation p.D899H 0.22 tolerated(0.12) benign(0.221) TCGA-CG-5723-01 15 54307652 54307652 A G UNC13C Missense_Mutation p.D851G 0.18 deleterious_low_confidence(0) possibly_damaging(0.697) TCGA-CG-5723-01 15 55759182 55759182 T - DYX1C1 Frame_Shift_Del p.I195* 0.25 TCGA-CG-5723-01 15 56388135 56388135 G A RFX7 Silent p.D597D 0.26 TCGA-CG-5723-01 15 58287284 58287284 T A ALDH1A2 Missense_Mutation p.I183F 0.27 deleterious(0.01) possibly_damaging(0.847) TCGA-CG-5723-01 15 62146564 62146565 - A VPS13C 3'UTR 0.20 TCGA-CG-5723-01 15 62978963 62978963 C T TLN2 Missense_Mutation p.R361C 0.19 deleterious(0) probably_damaging(0.999) TCGA-CG-5723-01 15 63004122 63004122 G A TLN2 Missense_Mutation p.R827H 0.22 deleterious(0) probably_damaging(0.972) TCGA-CG-5723-01 15 63434044 63434045 - T LACTB 3'UTR 0.24 TCGA-CG-5723-01 15 63990925 63990925 A G HERC1 Splice_Site p.X1635_splice 0.18 TCGA-CG-5723-01 15 64686305 64686305 A - TRIP4 Frame_Shift_Del p.D90Mfs*4 0.21 TCGA-CG-5723-01 15 64717782 64717782 C T TRIP4 Silent p.G509G 0.23 TCGA-CG-5723-01 15 65491212 65491212 G A CILP Missense_Mutation p.T471M 0.13 deleterious(0.03) possibly_damaging(0.621) TCGA-CG-5723-01 15 65702545 65702545 C A IGDCC4 Missense_Mutation p.K178N 0.17 deleterious(0.04) probably_damaging(1) TCGA-CG-5723-01 15 66048497 66048497 G A DENND4A Missense_Mutation p.P98S 0.21 tolerated(0.05) possibly_damaging(0.882) TCGA-CG-5723-01 15 66737006 66737006 C A MAP2K1 Missense_Mutation p.L177M 0.23 deleterious(0) probably_damaging(0.936) TCGA-CG-5723-01 15 68479955 68479955 T - PIAS1 Frame_Shift_Del p.F581Sfs*13 0.23 TCGA-CG-5723-01 15 68583129 68583129 A T FEM1B Missense_Mutation p.D478V 0.21 tolerated(0.12) benign(0.116) TCGA-CG-5723-01 15 70345628 70345628 T G TLE3 Missense_Mutation p.T641P 0.50 deleterious(0.04) probably_damaging(1) TCGA-CG-5723-01 15 72039263 72039263 C T THSD4 Missense_Mutation p.A708V 0.29 deleterious(0) probably_damaging(0.916) TCGA-CG-5723-01 15 73028236 73028236 G A BBS4 Missense_Mutation p.A393T 0.23 tolerated(0.54) benign(0.002) TCGA-CG-5723-01 15 74315304 74315304 G A PML Silent p.A246A 0.21 TCGA-CG-5723-01 15 74490099 74490099 C T STRA6 Silent p.S97S 0.27 TCGA-CG-5723-01 15 74536466 74536466 C T CCDC33 Silent p.S54S 0.24 TCGA-CG-5723-01 15 74636221 74636221 G - CYP11A1 Frame_Shift_Del p.M247Cfs*26 0.21 TCGA-CG-5723-01 15 74912515 74912515 T C CLK3 Silent p.H254H 0.17 TCGA-CG-5723-01 15 75042486 75042486 G A CYP1A2 Missense_Mutation p.R136H 0.22 tolerated(0.61) probably_damaging(0.997) TCGA-CG-5723-01 15 75047412 75047412 C T CYP1A2 Missense_Mutation p.R512C 0.21 deleterious(0.02) benign(0.214) TCGA-CG-5723-01 15 75308975 75308975 G A SCAMP5 Missense_Mutation p.A60T 0.30 deleterious(0.01) probably_damaging(0.979) TCGA-CG-5723-01 15 75968067 75968067 G A CSPG4 Missense_Mutation p.R2265C 0.23 deleterious(0) probably_damaging(0.943) TCGA-CG-5723-01 15 75981657 75981657 C T CSPG4 Silent p.P583P 0.25 TCGA-CG-5723-01 15 77426055 77426055 T C PEAK1 Silent p.P1123P 0.25 TCGA-CG-5723-01 15 78894011 78894011 C T CHRNA3 Missense_Mutation p.V325M 0.21 deleterious(0) probably_damaging(1) TCGA-CG-5723-01 15 79063957 79063957 C T ADAMTS7 Silent p.P782P 0.22 TCGA-CG-5723-01 15 81041945 81041945 G A ABHD17C Missense_Mutation p.A228T 0.24 deleterious(0) possibly_damaging(0.89) TCGA-CG-5723-01 15 81666342 81666342 G A TMC3 Missense_Mutation p.S26F 0.24 deleterious(0.03) possibly_damaging(0.73) TCGA-CG-5723-01 15 82564031 82564031 T C FAM154B Silent p.G47G 0.08 TCGA-CG-5723-01 15 84651204 84651204 T C ADAMTSL3 Missense_Mutation p.S942P 0.24 tolerated(0.35) benign(0.202) TCGA-CG-5723-01 15 85383249 85383249 C T ALPK3 Silent p.L449L 0.30 TCGA-CG-5723-01 15 87531266 87531267 - T AGBL1 Frame_Shift_Ins p.A1047Cfs*19 0.21 TCGA-CG-5723-01 15 89744315 89744315 A - ABHD2 3'UTR 0.22 TCGA-CG-5723-01 15 89848354 89848354 T C FANCI Silent p.L1023L 0.22 TCGA-CG-5723-01 15 90451554 90451554 C T C15orf38-AP3S2 Missense_Mutation p.A87T 0.25 tolerated_low_confidence(0.39) benign(0.006) TCGA-CG-5723-01 15 90799471 90799471 G A TTLL13 Missense_Mutation p.R216Q 0.25 tolerated(0.07) benign(0.035) TCGA-CG-5723-01 15 90800412 90800412 G A TTLL13 Missense_Mutation p.V250I 0.24 tolerated(0.18) possibly_damaging(0.79) TCGA-CG-5723-01 15 91019925 91019925 A - IQGAP1 Frame_Shift_Del p.N941Ifs*8 0.25 TCGA-CG-5723-01 15 93489428 93489428 C T CHD2 Silent p.I453I 0.22 TCGA-CG-5723-01 15 93595502 93595502 C T RGMA Silent p.S130S 0.29 TCGA-CG-5723-01 15 99500476 99500476 C - IGF1R Frame_Shift_Del p.L1305Wfs*45 0.30 TCGA-CG-5723-01 15 99500713 99500713 C T IGF1R 3'UTR 0.28 TCGA-CG-5723-01 15 99511846 99511846 G A PGPEP1L Missense_Mutation p.S151L 0.25 deleterious(0.01) probably_damaging(0.946) TCGA-CG-5723-01 16 11141159 11141159 T - CLEC16A Frame_Shift_Del p.L611Wfs*11 0.19 TCGA-CG-5723-01 16 1306669 1306669 G A TPSD1 Missense_Mutation p.A79T 0.27 deleterious(0.04) possibly_damaging(0.827) TCGA-CG-5723-01 16 1391384 1391384 T G BAIAP3 Missense_Mutation p.F244V 0.22 deleterious(0.02) probably_damaging(0.997) TCGA-CG-5723-01 16 14042196 14042196 A - ERCC4 Frame_Shift_Del p.K916Sfs*4 0.22 TCGA-CG-5723-01 16 14743706 14743706 G A BFAR Missense_Mutation p.D172N 0.24 tolerated(0.14) benign(0.068) TCGA-CG-5723-01 16 1537332 1537332 G - PTX4 Frame_Shift_Del p.Q256Rfs*81 0.27 TCGA-CG-5723-01 16 15788062 15788062 G A NDE1 Silent p.A248A 0.30 TCGA-CG-5723-01 16 15811163 15811163 C T MYH11 Missense_Mutation p.A1787T 0.16 possibly_damaging(0.676) TCGA-CG-5723-01 16 15814829 15814829 T C MYH11 Missense_Mutation p.D1560G 0.25 probably_damaging(1) TCGA-CG-5723-01 16 15853542 15853542 C T MYH11 Missense_Mutation p.R438H 0.28 probably_damaging(0.999) TCGA-CG-5723-01 16 1604942 1604942 C - TMEM204 Frame_Shift_Del p.R201Gfs*2 0.31 TCGA-CG-5723-01 16 16267261 16267261 C T ABCC6 Silent p.R889R 0.22 TCGA-CG-5723-01 16 1712579 1712579 G A CRAMP1L Silent p.P834P 0.28 TCGA-CG-5723-01 16 17202689 17202689 T C XYLT1 Missense_Mutation p.T915A 0.11 tolerated(0.17) benign(0.094) TCGA-CG-5723-01 16 1824335 1824335 C T EME2 Silent p.G153G 0.14 TCGA-CG-5723-01 16 1827312 1827312 A C SPSB3 Missense_Mutation p.L285R 0.26 deleterious(0) probably_damaging(0.993) TCGA-CG-5723-01 16 19278340 19278340 G A SYT17 Missense_Mutation p.S456N 0.30 deleterious(0.01) possibly_damaging(0.628) TCGA-CG-5723-01 16 1961547 1961547 C T HS3ST6 3'UTR 0.44 TCGA-CG-5723-01 16 20380924 20380924 C T PDILT Missense_Mutation p.V336I 0.24 tolerated(0.05) benign(0.223) TCGA-CG-5723-01 16 21983256 21983256 A T UQCRC2 Missense_Mutation p.E260V 0.16 tolerated(0.39) benign(0.001) TCGA-CG-5723-01 16 2258729 2258729 G A MLST8 Intron 0.24 TCGA-CG-5723-01 16 23091276 23091276 G A USP31 Missense_Mutation p.H723Y 0.27 deleterious(0) probably_damaging(0.999) TCGA-CG-5723-01 16 23096246 23096246 G T USP31 Missense_Mutation p.R589S 0.17 tolerated(0.44) benign(0.255) TCGA-CG-5723-01 16 23614847 23614847 G A PALB2 Missense_Mutation p.S1165L 0.24 deleterious(0) probably_damaging(1) TCGA-CG-5723-01 16 2514081 2514081 C - C16orf59 Frame_Shift_Del p.G338Efs*50 0.38 TCGA-CG-5723-01 16 2546053 2546053 G T RP11-20I23.1 5'UTR 0.19 TCGA-CG-5723-01 16 2577818 2577818 G A AMDHD2 Missense_Mutation p.A154T 0.50 deleterious(0.01) probably_damaging(0.999) TCGA-CG-5723-01 16 2580785 2580785 G - CEMP1 Frame_Shift_Del p.P97Lfs*69 0.26 TCGA-CG-5723-01 16 27539991 27539991 C T GTF3C1 Missense_Mutation p.G301R 0.25 deleterious(0.05) probably_damaging(0.999) TCGA-CG-5723-01 16 27751808 27751809 CT - KIAA0556 Frame_Shift_Del p.L732Hfs*14 0.23 TCGA-CG-5723-01 16 27784524 27784524 G A KIAA0556 Missense_Mutation p.E1435K 0.09 deleterious(0.04) possibly_damaging(0.687) TCGA-CG-5723-01 16 2810378 2810378 G A SRRM2 Missense_Mutation p.G304R 0.17 unknown(0) TCGA-CG-5723-01 16 28117503 28117503 C T XPO6 Missense_Mutation p.G882D 0.06 tolerated(0.11) possibly_damaging(0.56) TCGA-CG-5723-01 16 28145176 28145176 C T XPO6 Missense_Mutation p.A508T 0.24 tolerated(0.84) benign(0.007) TCGA-CG-5723-01 16 28509138 28509138 G A APOBR Missense_Mutation p.G926R 0.29 tolerated(0.15) benign(0.207) TCGA-CG-5723-01 16 28878124 28878124 G - SH2B1 Frame_Shift_Del p.G238Afs*3 0.25 TCGA-CG-5723-01 16 28906263 28906263 G A ATP2A1 Missense_Mutation p.A470T 0.19 tolerated(0.08) benign(0.026) TCGA-CG-5723-01 16 29115246 29115246 G A CTB-134H23.3 RNA 0.33 TCGA-CG-5723-01 16 29825452 29825452 T - PRRT2 Intron 0.16 TCGA-CG-5723-01 16 29828545 29828545 C T PAGR1 Missense_Mutation p.T166M 0.25 deleterious(0) probably_damaging(0.975) TCGA-CG-5723-01 16 29999115 29999115 G A TAOK2 Silent p.P1174P 0.29 TCGA-CG-5723-01 16 30018527 30018529 CTT - DOC2A In_Frame_Del p.K207del 0.31 TCGA-CG-5723-01 16 30106447 30106447 C - YPEL3 Frame_Shift_Del p.R85Vfs*9 0.28 TCGA-CG-5723-01 16 30124065 30124065 G A GDPD3 Missense_Mutation p.R78W 0.26 deleterious(0) probably_damaging(0.98) TCGA-CG-5723-01 16 30129759 30129759 G A MAPK3 Missense_Mutation p.R152W 0.25 deleterious(0) probably_damaging(0.999) TCGA-CG-5723-01 16 30593992 30593992 G A ZNF785 Silent p.R369R 0.15 TCGA-CG-5723-01 16 30666220 30666220 G A PRR14 Missense_Mutation p.R310H 0.18 tolerated(0.15) benign(0.033) TCGA-CG-5723-01 16 30723463 30723463 G A SRCAP Silent p.T600T 0.29 TCGA-CG-5723-01 16 30779279 30779279 A G RNF40 Silent p.K498K 0.18 TCGA-CG-5723-01 16 31092480 31092480 G A ZNF646 Missense_Mutation p.S1612N 0.21 tolerated(0.16) benign(0.083) TCGA-CG-5723-01 16 31123292 31123292 C - BCKDK Frame_Shift_Del p.L348Sfs*156 0.17 TCGA-CG-5723-01 16 31138555 31138555 G A KAT8 Missense_Mutation p.E188K 0.24 deleterious(0) possibly_damaging(0.648) TCGA-CG-5723-01 16 31232241 31232241 T C TRIM72 Splice_Site p.X247_splice 0.21 TCGA-CG-5723-01 16 31283278 31283278 G T ITGAM Silent p.G223G 0.15 TCGA-CG-5723-01 16 31284825 31284825 C T ITGAM Missense_Mutation p.R282C 0.30 deleterious(0.01) probably_damaging(1) TCGA-CG-5723-01 16 3191292 3191292 G A ZNF213 Missense_Mutation p.A442T 0.21 tolerated(0.66) benign(0) TCGA-CG-5723-01 16 31927586 31927586 G A ZNF267 Silent p.R672R 0.22 TCGA-CG-5723-01 16 338227 338227 G A AXIN1 Silent p.S828S 0.28 TCGA-CG-5723-01 16 3551057 3551057 A C CLUAP1 5'UTR 0.19 TCGA-CG-5723-01 16 418565 418565 C T MRPL28 Missense_Mutation p.R171Q 0.19 tolerated(0.1) benign(0.26) TCGA-CG-5723-01 16 4463375 4463375 C T CORO7 Missense_Mutation p.A31T 0.30 tolerated(0.42) benign(0.003) TCGA-CG-5723-01 16 46714715 46714715 G T VPS35 Missense_Mutation p.S125Y 0.23 deleterious(0.01) possibly_damaging(0.701) TCGA-CG-5723-01 16 4700454 4700454 T C MGRN1 Silent p.D59D 0.03 TCGA-CG-5723-01 16 48594921 48594921 G A N4BP1 Missense_Mutation p.R545C 0.19 deleterious(0.01) benign(0.007) TCGA-CG-5723-01 16 4944500 4944500 G - PPL Frame_Shift_Del p.T455Qfs*37 0.19 TCGA-CG-5723-01 16 4950862 4950862 C A PPL Missense_Mutation p.S192I 0.09 deleterious(0) benign(0.273) TCGA-CG-5723-01 16 49670430 49670430 T C ZNF423 Missense_Mutation p.D878G 0.21 tolerated(0.17) benign(0.129) TCGA-CG-5723-01 16 55358985 55358985 C T IRX6 5'UTR 0.13 TCGA-CG-5723-01 16 55903594 55903594 G A CES5A Silent p.S189S 0.27 TCGA-CG-5723-01 16 57060576 57060576 G A NLRC5 Missense_Mutation p.R574H 0.19 tolerated(0.17) benign(0.014) TCGA-CG-5723-01 16 57060597 57060597 C T NLRC5 Missense_Mutation p.A581V 0.19 deleterious(0.04) benign(0.353) TCGA-CG-5723-01 16 57503122 57503122 A G POLR2C Missense_Mutation p.T102A 0.20 tolerated(0.07) benign(0.185) TCGA-CG-5723-01 16 57695814 57695814 T A GPR56 Missense_Mutation p.F630I 0.22 deleterious(0.01) probably_damaging(0.955) TCGA-CG-5723-01 16 57918222 57918222 G A CNGB1 Missense_Mutation p.P1201L 0.15 deleterious(0.04) possibly_damaging(0.777) TCGA-CG-5723-01 16 58149340 58149340 G A C16orf80 Missense_Mutation p.R100C 0.31 deleterious(0) benign(0.15) TCGA-CG-5723-01 16 58314269 58314269 C T PRSS54 Silent p.A349A 0.18 TCGA-CG-5723-01 16 66881124 66881124 C T CA7 Nonsense_Mutation p.R78* 0.29 TCGA-CG-5723-01 16 67070569 67070570 TC - CBFB Frame_Shift_Del p.L66Pfs*16 0.28 TCGA-CG-5723-01 16 67662409 67662409 C A CTCF Missense_Mutation p.P552H 0.08 deleterious(0) probably_damaging(1) TCGA-CG-5723-01 16 67914081 67914081 G A EDC4 Missense_Mutation p.A687T 0.29 tolerated(0.58) benign(0.046) TCGA-CG-5723-01 16 69942692 69942692 C T WWP2 Missense_Mutation p.R315C 0.25 deleterious(0) probably_damaging(0.93) TCGA-CG-5723-01 16 69963368 69963368 G T WWP2 Nonsense_Mutation p.G418* 0.24 TCGA-CG-5723-01 16 70172927 70172927 G A PDPR Splice_Site p.X439_splice 0.14 TCGA-CG-5723-01 16 70501297 70501297 C T FUK Missense_Mutation p.R169W 0.25 deleterious(0.01) possibly_damaging(0.773) TCGA-CG-5723-01 16 71423797 71423797 C - CALB2 3'UTR 0.22 TCGA-CG-5723-01 16 71690580 71690580 T C PHLPP2 Missense_Mutation p.I762V 0.24 tolerated(0.13) probably_damaging(0.99) TCGA-CG-5723-01 16 71748706 71748707 - A PHLPP2 Intron 0.22 TCGA-CG-5723-01 16 722950 722950 C T RHOT2 Missense_Mutation p.T517I 0.15 tolerated(1) benign(0.013) TCGA-CG-5723-01 16 72992888 72992888 C T ZFHX3 Missense_Mutation p.G386D 0.26 possibly_damaging(0.637) TCGA-CG-5723-01 16 74423895 74423895 C - NPIPB15 Frame_Shift_Del p.P205Lfs*35 0.10 TCGA-CG-5723-01 16 75263765 75263765 C T BCAR1 Missense_Mutation p.A799T 0.18 tolerated(1) probably_damaging(0.942) TCGA-CG-5723-01 16 76555939 76555939 C T CNTNAP4 Missense_Mutation p.P774L 0.21 deleterious(0.02) probably_damaging(1) TCGA-CG-5723-01 16 77775744 77775744 A - NUDT7 Frame_Shift_Del p.K207Nfs*14 0.25 TCGA-CG-5723-01 16 77859261 77859262 - C VAT1L Frame_Shift_Ins p.M163Hfs*12 0.18 TCGA-CG-5723-01 16 81161554 81161554 C T PKD1L2 RNA 0.24 TCGA-CG-5723-01 16 81934352 81934352 G A PLCG2 Silent p.S443S 0.15 TCGA-CG-5723-01 16 81944173 81944173 C T PLCG2 Silent p.G594G 0.25 TCGA-CG-5723-01 16 81965249 81965249 T A PLCG2 Missense_Mutation p.I910N 0.14 tolerated(0.13) benign(0.001) TCGA-CG-5723-01 16 836152 836152 G A RPUSD1 Missense_Mutation p.S246L 0.23 tolerated(0.35) benign(0.013) TCGA-CG-5723-01 16 83948976 83948976 G A MLYCD Missense_Mutation p.R455H 0.20 deleterious(0) probably_damaging(0.968) TCGA-CG-5723-01 16 84218535 84218535 G A TAF1C Silent p.S20S 0.14 TCGA-CG-5723-01 16 84492752 84492752 T - ATP2C2 Frame_Shift_Del p.Y727Tfs*11 0.21 TCGA-CG-5723-01 16 84806195 84806195 G A USP10 Missense_Mutation p.V683M 0.22 deleterious(0) probably_damaging(0.999) TCGA-CG-5723-01 16 85936519 85936519 C A IRF8 Intron 0.24 TCGA-CG-5723-01 16 85948086 85948086 G A IRF8 Silent p.P187P 0.27 TCGA-CG-5723-01 16 8722955 8722957 ATC - METTL22 In_Frame_Del p.I169del 0.22 TCGA-CG-5723-01 16 88901652 88901652 G A GALNS Silent p.N289N 0.35 TCGA-CG-5723-01 16 89345633 89345633 G A ANKRD11 Silent p.F2439F 0.17 TCGA-CG-5723-01 16 89804098 89804098 T C FANCA 3'UTR 0.26 TCGA-CG-5723-01 16 90001817 90001817 C T TUBB3 Missense_Mutation p.R320C 0.22 deleterious_low_confidence(0.02) possibly_damaging(0.703) TCGA-CG-5723-01 17 1183640 1183640 C T TUSC5 Silent p.P115P 0.19 TCGA-CG-5723-01 17 12639605 12639605 C T MYOCD Silent p.D181D 0.20 TCGA-CG-5723-01 17 1549706 1549706 C T RILP 3'UTR 0.29 TCGA-CG-5723-01 17 15532000 15532000 C T TRIM16 Missense_Mutation p.A542T 0.12 tolerated(0.35) benign(0.001) TCGA-CG-5723-01 17 15973548 15973548 G A NCOR1 Missense_Mutation p.R1482W 0.20 probably_damaging(0.997) TCGA-CG-5723-01 17 16635881 16635881 G A CCDC144A Silent p.K773K 0.21 TCGA-CG-5723-01 17 16722181 16722181 G A AC022596.6 RNA 0.33 TCGA-CG-5723-01 17 17699170 17699170 G A RAI1 Missense_Mutation p.A970T 0.30 tolerated(0.5) benign(0.003) TCGA-CG-5723-01 17 18148975 18148975 C A FLII Splice_Site p.X1168_splice 0.24 TCGA-CG-5723-01 17 18167618 18167618 C T MIEF2 Missense_Mutation p.A313V 0.23 tolerated(0.42) possibly_damaging(0.449) TCGA-CG-5723-01 17 18647733 18647733 G T FBXW10 Missense_Mutation p.G59V 0.20 deleterious(0.01) benign(0.063) TCGA-CG-5723-01 17 19235367 19235367 C A EPN2 Missense_Mutation p.P538H 0.20 deleterious(0) probably_damaging(0.999) TCGA-CG-5723-01 17 19289686 19289686 G - MFAP4 Frame_Shift_Del p.S84Rfs*13 0.26 TCGA-CG-5723-01 17 19319112 19319112 G A RNF112 Missense_Mutation p.R507H 0.46 tolerated(0.11) benign(0.14) TCGA-CG-5723-01 17 19641649 19641649 G - ALDH3A1 Frame_Shift_Del p.P445Rfs*6 0.28 TCGA-CG-5723-01 17 2200581 2200581 A G SMG6 Missense_Mutation p.Y703H 0.17 deleterious(0) probably_damaging(0.996) TCGA-CG-5723-01 17 26961681 26961681 G A KIAA0100 Missense_Mutation p.A975V 0.22 tolerated(0.08) benign(0.188) TCGA-CG-5723-01 17 27017981 27017981 G A SUPT6H Missense_Mutation p.R1178H 0.26 deleterious(0) probably_damaging(0.943) TCGA-CG-5723-01 17 27028023 27028023 C T SUPT6H Missense_Mutation p.T1624M 0.25 tolerated(0.13) benign(0.213) TCGA-CG-5723-01 17 27209007 27209007 G A FLOT2 Missense_Mutation p.R247C 0.27 deleterious(0) possibly_damaging(0.453) TCGA-CG-5723-01 17 27238239 27238239 G A PHF12 Silent p.P702P 0.18 TCGA-CG-5723-01 17 27946167 27946167 G A CORO6 Missense_Mutation p.T121M 0.16 deleterious(0.01) possibly_damaging(0.572) TCGA-CG-5723-01 17 27957711 27957711 T C SSH2 3'UTR 0.25 TCGA-CG-5723-01 17 28791650 28791650 T G CPD Missense_Mutation p.C1321G 0.26 tolerated_low_confidence(0.08) possibly_damaging(0.758) TCGA-CG-5723-01 17 2894595 2894595 T C RAP1GAP2 Missense_Mutation p.L273P 0.17 deleterious(0.01) benign(0.105) TCGA-CG-5723-01 17 29280306 29280306 C T ADAP2 Missense_Mutation p.L248F 0.24 deleterious(0) probably_damaging(0.982) TCGA-CG-5723-01 17 2996177 2996177 C T OR1D2 Silent p.T38T 0.19 TCGA-CG-5723-01 17 33806619 33806620 - A SLFN12L Frame_Shift_Ins p.N204* 0.19 TCGA-CG-5723-01 17 3402247 3402247 G A ASPA Silent p.T269T 0.23 TCGA-CG-5723-01 17 34848677 34848677 C T ZNHIT3 Missense_Mutation p.R47C 0.15 tolerated(0.11) benign(0.006) TCGA-CG-5723-01 17 34869254 34869254 C T MYO19 Intron 0.24 TCGA-CG-5723-01 17 34945935 34945935 A C GGNBP2 3'UTR 0.12 TCGA-CG-5723-01 17 35487138 35487138 C T ACACA Missense_Mutation p.G1896R 0.20 deleterious(0) probably_damaging(0.979) TCGA-CG-5723-01 17 36865745 36865745 G A MLLT6 Missense_Mutation p.A157T 0.06 deleterious(0) unknown(0) TCGA-CG-5723-01 17 37234200 37234200 G T PLXDC1 Silent p.S384S 0.19 TCGA-CG-5723-01 17 37627892 37627892 C - CDK12 Frame_Shift_Del p.P604Lfs*6 0.18 TCGA-CG-5723-01 17 37922577 37922577 C T IKZF3 Silent p.S332S 0.23 TCGA-CG-5723-01 17 3851105 3851105 G T ATP2A3 Silent p.A225A 0.20 TCGA-CG-5723-01 17 38976553 38976553 T G KRT10 Missense_Mutation p.E330D 0.10 deleterious(0.05) benign(0.34) TCGA-CG-5723-01 17 3926055 3926055 T - ZZEF1 Frame_Shift_Del p.K2387Sfs*40 0.25 TCGA-CG-5723-01 17 39334156 39334156 T C KRTAP4-2 Silent p.R87R 0.19 TCGA-CG-5723-01 17 39406326 39406326 C T KRTAP9-4 Silent p.N118N 0.04 TCGA-CG-5723-01 17 39643638 39643638 C T KRT36 Missense_Mutation p.A318T 0.14 tolerated(0.29) possibly_damaging(0.699) TCGA-CG-5723-01 17 39658827 39658827 G A KRT13 Missense_Mutation p.T348M 0.21 deleterious(0.01) probably_damaging(0.953) TCGA-CG-5723-01 17 40256929 40256929 C T DHX58 Missense_Mutation p.R473Q 0.27 deleterious(0) probably_damaging(0.983) TCGA-CG-5723-01 17 40266539 40266539 C T KAT2A Silent p.R701R 0.22 TCGA-CG-5723-01 17 40825735 40825735 G A PLEKHH3 Missense_Mutation p.A139V 0.24 deleterious(0) unknown(0) TCGA-CG-5723-01 17 40839898 40839898 G A CNTNAP1 Missense_Mutation p.R402H 0.19 tolerated(0.16) benign(0.004) TCGA-CG-5723-01 17 40997823 40997823 C T AOC2 Missense_Mutation p.R394W 0.28 deleterious(0) probably_damaging(0.998) TCGA-CG-5723-01 17 41165127 41165127 G A IFI35 Missense_Mutation p.V62M 0.25 tolerated(0.67) benign(0.037) TCGA-CG-5723-01 17 41598812 41598812 G A DHX8 Missense_Mutation p.V1048M 0.25 deleterious(0) probably_damaging(0.986) TCGA-CG-5723-01 17 42089271 42089271 C A TMEM101 3'UTR 0.25 TCGA-CG-5723-01 17 42477238 42477238 G - GPATCH8 Frame_Shift_Del p.P736Lfs*373 0.29 TCGA-CG-5723-01 17 42979740 42979740 C - CCDC103 Frame_Shift_Del p.L97Sfs*82 0.18 TCGA-CG-5723-01 17 42990757 42990757 G A GFAP Silent p.V220V 0.22 TCGA-CG-5723-01 17 43475404 43475404 G A ARHGAP27 Nonsense_Mutation p.R244* 0.13 TCGA-CG-5723-01 17 4497136 4497136 G A SMTNL2 Silent p.T250T 0.16 TCGA-CG-5723-01 17 45361816 45361816 G A ITGB3 Silent p.S123S 0.18 TCGA-CG-5723-01 17 45759854 45759854 C T KPNB1 3'UTR 0.31 TCGA-CG-5723-01 17 45914298 45914298 A G LRRC46 Missense_Mutation p.T260A 0.22 tolerated(0.75) benign(0.004) TCGA-CG-5723-01 17 4638521 4638521 T - CXCL16 Frame_Shift_Del p.N214Mfs*82 0.34 TCGA-CG-5723-01 17 4646665 4646665 G A ZMYND15 Nonsense_Mutation p.W404* 0.03 TCGA-CG-5723-01 17 46606967 46606967 G A HOXB1 Missense_Mutation p.A283V 0.23 tolerated(0.21) benign(0.004) TCGA-CG-5723-01 17 46628527 46628527 G A HOXB3 Silent p.G155G 0.50 TCGA-CG-5723-01 17 46973023 46973023 G A ATP5G1 Silent p.P101P 0.26 TCGA-CG-5723-01 17 47284234 47284234 G A GNGT2 Missense_Mutation p.A32V 0.24 tolerated(0.13) benign(0.014) TCGA-CG-5723-01 17 47394604 47394604 C T ZNF652 Missense_Mutation p.A162T 0.19 tolerated(0.31) benign(0.05) TCGA-CG-5723-01 17 47486482 47486483 CT - PHB Frame_Shift_Del p.E144Afs*23 0.21 TCGA-CG-5723-01 17 47918915 47918915 T - TAC4 Frame_Shift_Del p.A84Hfs*101 0.20 TCGA-CG-5723-01 17 4805169 4805169 G A C17orf107 3'UTR 0.14 TCGA-CG-5723-01 17 48777178 48777178 A T ANKRD40 Silent p.V120V 0.27 TCGA-CG-5723-01 17 5329385 5329385 C T RPAIN Silent p.I136I 0.11 TCGA-CG-5723-01 17 56389568 56389568 G A BZRAP1 Missense_Mutation p.R872C 0.28 deleterious(0) probably_damaging(0.995) TCGA-CG-5723-01 17 57157177 57157177 G A TRIM37 Missense_Mutation p.A185V 0.24 tolerated(0.1) benign(0.005) TCGA-CG-5723-01 17 57430638 57430638 T G YPEL2 5'UTR 0.38 TCGA-CG-5723-01 17 57679949 57679949 G A DHX40 Missense_Mutation p.A625T 0.24 tolerated(0.21) benign(0.15) TCGA-CG-5723-01 17 57759076 57759076 G A CLTC Silent p.A1106A 0.23 TCGA-CG-5723-01 17 58506875 58506875 C - C17orf64 Frame_Shift_Del p.L196Cfs*16 0.26 TCGA-CG-5723-01 17 59760492 59760492 A - BRIP1 3'UTR 0.71 TCGA-CG-5723-01 17 60059997 60059997 T C MED13 Missense_Mutation p.T1123A 0.21 deleterious(0.01) benign(0.256) TCGA-CG-5723-01 17 61685395 61685396 - A TACO1 3'UTR 0.09 TCGA-CG-5723-01 17 62518978 62518978 G A CEP95 Missense_Mutation p.V292I 0.24 tolerated(0.31) benign(0.001) TCGA-CG-5723-01 17 63189717 63189717 T G RGS9 Missense_Mutation p.L268R 0.18 deleterious(0.02) benign(0.383) TCGA-CG-5723-01 17 6328845 6328845 C T AIPL1 Missense_Mutation p.A364T 0.25 tolerated_low_confidence(0.3) unknown(0) TCGA-CG-5723-01 17 63532585 63532585 C - AXIN2 Frame_Shift_Del p.G665Afs*24 0.29 TCGA-CG-5723-01 17 66036862 66036862 C G KPNA2 Silent p.L94L 0.18 TCGA-CG-5723-01 17 66538187 66538187 C T FAM20A Missense_Mutation p.A350T 0.28 deleterious(0) probably_damaging(1) TCGA-CG-5723-01 17 67031809 67031809 G T ABCA9 Missense_Mutation p.L312M 0.29 tolerated(0.06) possibly_damaging(0.702) TCGA-CG-5723-01 17 67212448 67212448 A - ABCA10 Frame_Shift_Del p.F194Lfs*6 0.22 TCGA-CG-5723-01 17 708453 708453 G A NXN Silent p.G285G 0.20 TCGA-CG-5723-01 17 72218769 72218769 C T TTYH2 Missense_Mutation p.T92M 0.44 tolerated(0.09) benign(0.16) TCGA-CG-5723-01 17 73096181 73096181 C T SLC16A5 Silent p.N141N 0.21 TCGA-CG-5723-01 17 7320376 7320376 T C NLGN2 Missense_Mutation p.V589A 0.25 deleterious(0.03) benign(0.414) TCGA-CG-5723-01 17 7339229 7339229 C - TMEM102 Frame_Shift_Del p.P14Rfs*24 0.29 TCGA-CG-5723-01 17 73555400 73555400 G A LLGL2 Missense_Mutation p.G147S 0.29 deleterious(0) probably_damaging(1) TCGA-CG-5723-01 17 74004930 74004930 C T EVPL Silent p.R1452R 0.26 TCGA-CG-5723-01 17 74080177 74080177 G A EXOC7 Missense_Mutation p.A672V 0.29 tolerated(0.05) benign(0.021) TCGA-CG-5723-01 17 7415852 7415852 A G POLR2A Missense_Mutation p.M1517V 0.06 benign(0.165) TCGA-CG-5723-01 17 7417070 7417070 G A POLR2A Silent p.S1829S 0.20 TCGA-CG-5723-01 17 74382511 74382511 C T SPHK1 Missense_Mutation p.T185I 0.26 tolerated(0.09) benign(0.012) TCGA-CG-5723-01 17 7462460 7462460 G - TNFSF13 Frame_Shift_Del p.A37Qfs*13 0.11 TCGA-CG-5723-01 17 75478334 75478334 G A SEPT9 Missense_Mutation p.G277D 0.20 deleterious(0.01) probably_damaging(0.994) TCGA-CG-5723-01 17 7578424 7578424 A G TP53 Missense_Mutation p.M169T 0.11 tolerated(0.06) benign(0.09) TCGA-CG-5723-01 17 76425217 76425217 G - DNAH17 Frame_Shift_Del p.N4125Tfs*34 0.20 TCGA-CG-5723-01 17 76430202 76430202 C A DNAH17 Missense_Mutation p.A4039S 0.21 benign(0.065) TCGA-CG-5723-01 17 76869992 76869992 G A TIMP2 Missense_Mutation p.A47V 0.27 deleterious(0.01) probably_damaging(0.991) TCGA-CG-5723-01 17 77043914 77043914 T C C1QTNF1 Missense_Mutation p.L197P 0.14 deleterious(0) probably_damaging(0.999) TCGA-CG-5723-01 17 7710586 7710586 C T DNAH2 Silent p.G3187G 0.26 TCGA-CG-5723-01 17 7761538 7761538 A T CYB5D1 Missense_Mutation p.N29I 0.28 deleterious(0) probably_damaging(0.93) TCGA-CG-5723-01 17 77769888 77769888 G A CBX8 Missense_Mutation p.R72C 0.20 deleterious(0) probably_damaging(0.973) TCGA-CG-5723-01 17 7803346 7803346 T C CHD3 Missense_Mutation p.S952P 0.29 possibly_damaging(0.637) TCGA-CG-5723-01 17 7814810 7814812 GAA - CHD3 In_Frame_Del p.K2031del 0.36 TCGA-CG-5723-01 17 78162303 78162305 AGG - CARD14 In_Frame_Del p.E270del 0.29 TCGA-CG-5723-01 17 78226605 78226605 T C SLC26A11 3'UTR 0.25 TCGA-CG-5723-01 17 78317076 78317076 C T RNF213 Missense_Mutation p.A2045V 0.12 benign(0.021) TCGA-CG-5723-01 17 7917326 7917326 A G GUCY2D Missense_Mutation p.M798V 0.23 deleterious(0.01) benign(0.033) TCGA-CG-5723-01 17 79514156 79514156 T C C17orf70 Missense_Mutation p.Q651R 0.18 deleterious(0.02) benign(0.066) TCGA-CG-5723-01 17 79612317 79612317 G - TSPAN10 Frame_Shift_Del p.L116Cfs*19 0.29 TCGA-CG-5723-01 17 80195343 80195343 G A SLC16A3 Missense_Mutation p.V233M 0.21 tolerated(0.09) benign(0.137) TCGA-CG-5723-01 17 80884364 80884364 C T TBCD Missense_Mutation p.A823V 0.20 tolerated(0.08) benign(0.356) TCGA-CG-5723-01 17 8197809 8197809 G A SLC25A35 Missense_Mutation p.A106V 0.16 tolerated(1) possibly_damaging(0.452) TCGA-CG-5723-01 17 8222163 8222163 C - ARHGEF15 Frame_Shift_Del p.R658Afs*137 0.27 TCGA-CG-5723-01 17 8381732 8381732 C T MYH10 Missense_Mutation p.R1877H 0.24 probably_damaging(0.997) TCGA-CG-5723-01 17 8638419 8638419 C T CCDC42 Missense_Mutation p.D290N 0.19 tolerated(0.33) probably_damaging(0.993) TCGA-CG-5723-01 17 9570015 9570015 T C USP43 Silent p.A229A 0.18 TCGA-CG-5723-01 17 9828912 9828912 C T GAS7 Missense_Mutation p.R340Q 0.21 deleterious(0.03) benign(0.198) TCGA-CG-5723-01 17 9923135 9923135 G A GAS7 Missense_Mutation p.S88L 0.20 deleterious(0) probably_damaging(0.955) TCGA-CG-5723-01 18 13746253 13746253 A - RNMT Frame_Shift_Del p.T394Hfs*19 0.19 TCGA-CG-5723-01 18 14478405 14478405 C T CXADRP3 RNA 0.33 TCGA-CG-5723-01 18 19996086 19996086 G T CTAGE1 Silent p.P563P 0.28 TCGA-CG-5723-01 18 21338390 21338391 - G LAMA3 Frame_Shift_Ins p.E328Gfs*4 0.30 TCGA-CG-5723-01 18 21495340 21495340 A - LAMA3 Frame_Shift_Del p.T2580Hfs*68 0.21 TCGA-CG-5723-01 18 21891961 21891961 T C OSBPL1A Missense_Mutation p.K360R 0.26 tolerated(0.31) benign(0.001) TCGA-CG-5723-01 18 23713864 23713864 C G PSMA8 5'UTR 0.36 TCGA-CG-5723-01 18 28991227 28991227 C T DSG4 Missense_Mutation p.T743M 0.14 tolerated(0.11) benign(0.064) TCGA-CG-5723-01 18 34340669 34340669 G A FHOD3 Silent p.V1333V 0.23 TCGA-CG-5723-01 18 34465570 34465570 A G KIAA1328 Missense_Mutation p.E128G 0.18 deleterious(0) possibly_damaging(0.643) TCGA-CG-5723-01 18 347267 347267 G A COLEC12 Missense_Mutation p.R119C 0.30 deleterious(0) probably_damaging(0.973) TCGA-CG-5723-01 18 34850756 34850756 G A CELF4 Silent p.F358F 0.31 TCGA-CG-5723-01 18 3879906 3879906 C A DLGAP1 Missense_Mutation p.A55S 0.23 tolerated(1) benign(0.001) TCGA-CG-5723-01 18 44260327 44260327 G A ST8SIA5 Missense_Mutation p.S270L 0.20 probably_damaging(0.946) TCGA-CG-5723-01 18 44555084 44555084 C T TCEB3C Missense_Mutation p.R377H 0.02 deleterious(0.01) probably_damaging(0.994) TCGA-CG-5723-01 18 45566726 45566726 G A ZBTB7C Silent p.F251F 0.21 TCGA-CG-5723-01 18 47812174 47812174 C - CXXC1 Frame_Shift_Del p.G195Afs*32 0.32 TCGA-CG-5723-01 18 48510955 48510956 - T ELAC1 Intron 0.11 TCGA-CG-5723-01 18 52258560 52258560 A - DYNAP Frame_Shift_Del p.N43Tfs*26 0.21 TCGA-CG-5723-01 18 54603098 54603098 G A WDR7 Missense_Mutation p.A1265T 0.31 deleterious(0) probably_damaging(0.957) TCGA-CG-5723-01 18 56586342 56586342 G A ZNF532 Missense_Mutation p.A275T 0.28 deleterious(0.02) possibly_damaging(0.764) TCGA-CG-5723-01 18 56646392 56646392 G A ZNF532 Missense_Mutation p.A1086T 0.19 tolerated(1) benign(0) TCGA-CG-5723-01 18 56979989 56979989 A G CPLX4 Silent p.A61A 0.17 TCGA-CG-5723-01 18 59895676 59895676 A G KIAA1468 Silent p.G431G 0.18 TCGA-CG-5723-01 18 61326636 61326636 T C SERPINB3 Silent p.L116L 0.24 TCGA-CG-5723-01 18 61652328 61652328 A - SERPINB8 Frame_Shift_Del p.K192Rfs*5 0.15 TCGA-CG-5723-01 18 67836303 67836303 C A RTTN Missense_Mutation p.A493S 0.23 deleterious(0.01) probably_damaging(0.925) TCGA-CG-5723-01 18 7015794 7015794 G - LAMA1 Frame_Shift_Del p.P1018Lfs*6 0.21 TCGA-CG-5723-01 18 71822600 71822600 T C TIMM21 Missense_Mutation p.Y142H 0.20 deleterious(0) probably_damaging(0.996) TCGA-CG-5723-01 18 72999246 72999246 G A TSHZ1 Silent p.T583T 0.20 TCGA-CG-5723-01 18 74700412 74700412 A G RP11-862L9.3 3'Flank 0.18 TCGA-CG-5723-01 18 77211059 77211059 C T NFATC1 Silent p.R552R 0.30 TCGA-CG-5723-01 18 8636338 8636338 G A RAB12 Missense_Mutation p.D202N 0.18 tolerated(0.33) benign(0.209) TCGA-CG-5723-01 19 10404792 10404792 T C ICAM5 Silent p.C596C 0.29 TCGA-CG-5723-01 19 10570296 10570296 G A PDE4A Missense_Mutation p.R409H 0.13 tolerated(0.25) benign(0.002) TCGA-CG-5723-01 19 1085856 1085856 G A HMHA1 Missense_Mutation p.G1104R 0.29 deleterious_low_confidence(0.03) benign(0.018) TCGA-CG-5723-01 19 10908090 10908090 G T DNM2 Missense_Mutation p.A411S 0.25 tolerated(0.13) possibly_damaging(0.664) TCGA-CG-5723-01 19 11213416 11213416 C T LDLR Silent p.C89C 0.22 TCGA-CG-5723-01 19 11446182 11446182 T G RAB3D Missense_Mutation p.D138A 0.23 deleterious(0) probably_damaging(0.949) TCGA-CG-5723-01 19 11488472 11488473 - A EPOR 3'UTR 0.31 TCGA-CG-5723-01 19 11559934 11559934 G A PRKCSH Missense_Mutation p.A462T 0.23 tolerated(0.17) benign(0.009) TCGA-CG-5723-01 19 12223806 12223806 G A ZNF788 Missense_Mutation p.A482T 0.20 tolerated(0.4) probably_damaging(0.97) TCGA-CG-5723-01 19 12256589 12256589 A G ZNF625 Silent p.T214T 0.19 TCGA-CG-5723-01 19 12501871 12501871 T G ZNF799 Missense_Mutation p.K447N 0.25 deleterious(0.03) possibly_damaging(0.471) TCGA-CG-5723-01 19 12739381 12739381 C T ZNF791 Silent p.H346H 0.22 TCGA-CG-5723-01 19 12766586 12766586 A G MAN2B1 Silent p.P584P 0.26 TCGA-CG-5723-01 19 12791075 12791075 C T DHPS Missense_Mutation p.R91H 0.28 tolerated(0.57) benign(0) TCGA-CG-5723-01 19 12800036 12800036 C T FBXW9 Silent p.Q457Q 0.24 TCGA-CG-5723-01 19 13008601 13008601 G - GCDH Frame_Shift_Del p.N392Mfs*9 0.28 TCGA-CG-5723-01 19 13184812 13184812 C T NFIX Missense_Mutation p.R264W 0.10 deleterious(0) probably_damaging(0.973) TCGA-CG-5723-01 19 13323306 13323306 G A CACNA1A Silent p.S2027S 0.50 TCGA-CG-5723-01 19 13414687 13414687 G A CACNA1A Silent p.G666G 0.24 TCGA-CG-5723-01 19 13470495 13470495 G A CACNA1A Silent p.F301F 0.18 TCGA-CG-5723-01 19 13939479 13939479 C T ZSWIM4 Silent p.N683N 0.18 TCGA-CG-5723-01 19 14000060 14000060 G A C19orf57 Silent p.L537L 0.25 TCGA-CG-5723-01 19 14288438 14288438 G A LPHN1 Silent p.Y63Y 0.21 TCGA-CG-5723-01 19 1428934 1428934 G A DAZAP1 Missense_Mutation p.A214T 0.21 tolerated(0.26) unknown(0) TCGA-CG-5723-01 19 1466376 1466376 C T APC2 Missense_Mutation p.R1026W 0.45 probably_damaging(0.965) TCGA-CG-5723-01 19 14772911 14772911 T C EMR3 Silent p.P73P 0.05 TCGA-CG-5723-01 19 14991937 14991937 T C OR7A17 Silent p.T77T 0.24 TCGA-CG-5723-01 19 15483787 15483787 A G AKAP8 Missense_Mutation p.S246P 0.21 tolerated(0.12) benign(0.015) TCGA-CG-5723-01 19 15905420 15905420 G T OR10H5 Missense_Mutation p.A188S 0.30 tolerated(0.42) benign(0.439) TCGA-CG-5723-01 19 16034738 16034738 C T CYP4F11 Missense_Mutation p.D268N 0.22 deleterious(0.04) benign(0.182) TCGA-CG-5723-01 19 16686954 16686954 C - MED26 Frame_Shift_Del p.V563* 0.23 TCGA-CG-5723-01 19 16791256 16791256 C T TMEM38A Silent p.C110C 0.23 TCGA-CG-5723-01 19 16860994 16860994 C T NWD1 Missense_Mutation p.T514M 0.30 tolerated(0.09) benign(0.363) TCGA-CG-5723-01 19 17014586 17014586 C T CPAMD8 Missense_Mutation p.A1492T 0.21 deleterious(0.02) probably_damaging(0.986) TCGA-CG-5723-01 19 17081703 17081703 G - CPAMD8 Frame_Shift_Del p.R785Efs*32 0.18 TCGA-CG-5723-01 19 17108023 17108023 G A CPAMD8 Silent p.V378V 0.12 TCGA-CG-5723-01 19 17327091 17327091 G A USE1 Silent p.A115A 0.14 TCGA-CG-5723-01 19 17476377 17476377 G A PLVAP Silent p.R299R 0.33 TCGA-CG-5723-01 19 17838387 17838387 C T MAP1S Missense_Mutation p.P732S 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-CG-5723-01 19 18177481 18177481 C T IL12RB1 Missense_Mutation p.V452I 0.21 tolerated(0.16) benign(0.349) TCGA-CG-5723-01 19 18183096 18183096 G A IL12RB1 Nonsense_Mutation p.R283* 0.20 TCGA-CG-5723-01 19 1825905 1825905 G A REXO1 Missense_Mutation p.S650L 0.25 tolerated(0.32) benign(0.001) TCGA-CG-5723-01 19 18313398 18313398 G A RAB3A Silent p.F51F 0.24 TCGA-CG-5723-01 19 18966799 18966799 C T UPF1 Missense_Mutation p.T537M 0.19 deleterious(0.02) probably_damaging(0.979) TCGA-CG-5723-01 19 19136833 19136833 G A SUGP2 Silent p.G108G 0.24 TCGA-CG-5723-01 19 19217167 19217167 C T SLC25A42 Missense_Mutation p.A157V 0.20 deleterious(0) probably_damaging(0.982) TCGA-CG-5723-01 19 19329854 19329854 C T NCAN Silent p.S68S 0.17 TCGA-CG-5723-01 19 19351447 19351447 G A NCAN Missense_Mutation p.D1149N 0.24 deleterious(0) probably_damaging(1) TCGA-CG-5723-01 19 19576260 19576260 T C GATAD2A Silent p.L36L 0.17 TCGA-CG-5723-01 19 19613299 19613299 G A GATAD2A Missense_Mutation p.A579T 0.27 tolerated(0.18) benign(0.001) TCGA-CG-5723-01 19 19791134 19791134 G A ZNF101 3'UTR 0.31 TCGA-CG-5723-01 19 21300337 21300337 T C ZNF714 Silent p.C289C 0.26 TCGA-CG-5723-01 19 2422029 2422029 C - TMPRSS9 Frame_Shift_Del p.S746Rfs*35 0.25 TCGA-CG-5723-01 19 2878389 2878389 C T ZNF556 3'UTR 0.29 TCGA-CG-5723-01 19 2917163 2917163 C T ZNF57 Missense_Mutation p.H182Y 0.19 tolerated(1) benign(0.221) TCGA-CG-5723-01 19 2987969 2987969 C T TLE6 Silent p.V233V 0.33 TCGA-CG-5723-01 19 31040042 31040042 C A ZNF536 Silent p.S1172S 0.26 TCGA-CG-5723-01 19 3119270 3119270 T G GNA11 Missense_Mutation p.S268A 0.21 deleterious(0) possibly_damaging(0.701) TCGA-CG-5723-01 19 31768425 31768425 C T TSHZ3 Silent p.A758A 0.24 TCGA-CG-5723-01 19 34838949 34838949 T C KIAA0355 Splice_Site p.X896_splice 0.19 TCGA-CG-5723-01 19 35250008 35250008 A G ZNF599 Silent p.N566N 0.28 TCGA-CG-5723-01 19 35753459 35753459 C T LSR Silent p.F262F 0.20 TCGA-CG-5723-01 19 35800979 35800979 G A MAG Silent p.G478G 0.29 TCGA-CG-5723-01 19 35993771 35993771 G - DMKN Frame_Shift_Del p.S385Afs*89 0.22 TCGA-CG-5723-01 19 3600476 3600476 G A TBXA2R Missense_Mutation p.R53W 0.39 deleterious(0.05) benign(0.033) TCGA-CG-5723-01 19 36043937 36043937 A G ATP4A Splice_Site p.X917_splice 0.15 TCGA-CG-5723-01 19 36046581 36046581 C T ATP4A Missense_Mutation p.R668H 0.22 deleterious(0.03) benign(0.273) TCGA-CG-5723-01 19 36269464 36269464 G A ARHGAP33 Silent p.P123P 0.17 TCGA-CG-5723-01 19 36278635 36278635 C - ARHGAP33 Frame_Shift_Del p.P897Hfs*115 0.39 TCGA-CG-5723-01 19 36365538 36365538 G A APLP1 Missense_Mutation p.A397T 0.22 tolerated(0.51) probably_damaging(0.994) TCGA-CG-5723-01 19 36557260 36557260 A G WDR62 Silent p.S164S 0.18 TCGA-CG-5723-01 19 3760158 3760158 G A APBA3 Silent p.S35S 0.20 TCGA-CG-5723-01 19 37975957 37975958 - T ZNF570 Frame_Shift_Ins p.S480* 0.20 TCGA-CG-5723-01 19 38706786 38706786 G A DPF1 Nonsense_Mutation p.R325* 0.28 TCGA-CG-5723-01 19 38949797 38949797 C T RYR1 Missense_Mutation p.R727C 0.17 probably_damaging(0.999) TCGA-CG-5723-01 19 39003103 39003103 A G RYR1 Missense_Mutation p.Q3151R 0.32 benign(0.027) TCGA-CG-5723-01 19 39963120 39963120 C - SUPT5H Frame_Shift_Del p.S676Vfs*19 0.18 TCGA-CG-5723-01 19 39998572 39998572 C - DLL3 Frame_Shift_Del p.P594Rfs*24 0.20 TCGA-CG-5723-01 19 40149264 40149264 G A LGALS16 Missense_Mutation p.G86D 0.21 tolerated(0.05) possibly_damaging(0.838) TCGA-CG-5723-01 19 40316485 40316485 G A DYRK1B Missense_Mutation p.P587L 0.43 tolerated_low_confidence(1) benign(0.002) TCGA-CG-5723-01 19 40730477 40730477 C T CNTD2 Missense_Mutation p.R144H 0.25 deleterious(0.02) probably_damaging(0.97) TCGA-CG-5723-01 19 40883965 40883965 G - PLD3 Frame_Shift_Del p.G454Afs*12 0.35 TCGA-CG-5723-01 19 40996012 40996012 C T SPTBN4 Missense_Mutation p.H118Y 0.33 deleterious(0) benign(0.072) TCGA-CG-5723-01 19 41132932 41132932 G A LTBP4 Silent p.P1412P 0.27 TCGA-CG-5723-01 19 41744385 41744385 C - AXL Frame_Shift_Del p.P337Lfs*29 0.22 TCGA-CG-5723-01 19 41745098 41745098 G T AXL Missense_Mutation p.E388D 0.19 tolerated(0.17) benign(0.077) TCGA-CG-5723-01 19 41798252 41798252 C A HNRNPUL1 Missense_Mutation p.L368I 0.21 deleterious(0.01) unknown(0) TCGA-CG-5723-01 19 41838133 41838133 T C TGFB1 Missense_Mutation p.D305G 0.20 deleterious(0) probably_damaging(0.999) TCGA-CG-5723-01 19 41932375 41932375 G A B3GNT8 Silent p.T103T 0.22 TCGA-CG-5723-01 19 42383610 42383610 C - CD79A Frame_Shift_Del p.R131Gfs*61 0.37 TCGA-CG-5723-01 19 42563569 42563569 G A GRIK5 Missense_Mutation p.R207C 0.15 deleterious(0) benign(0.017) TCGA-CG-5723-01 19 42621421 42621421 G A POU2F2 Missense_Mutation p.T95M 0.25 deleterious(0.02) possibly_damaging(0.714) TCGA-CG-5723-01 19 42713974 42713974 C T DEDD2 Missense_Mutation p.R156Q 0.25 tolerated(0.65) benign(0) TCGA-CG-5723-01 19 42796883 42796883 C - CIC Frame_Shift_Del p.P1116Qfs*45 0.28 TCGA-CG-5723-01 19 42861648 42861648 G A MEGF8 Silent p.P1574P 0.17 TCGA-CG-5723-01 19 4298064 4298064 C - TMIGD2 Frame_Shift_Del p.A109Rfs*8 0.16 TCGA-CG-5723-01 19 43967403 43967403 C T LYPD3 Missense_Mutation p.C140Y 0.24 deleterious(0) probably_damaging(0.989) TCGA-CG-5723-01 19 44280754 44280754 A C KCNN4 Missense_Mutation p.I65S 0.34 deleterious(0.01) possibly_damaging(0.784) TCGA-CG-5723-01 19 44635779 44635779 C A ZNF225 Missense_Mutation p.H338N 0.24 deleterious(0) probably_damaging(0.998) TCGA-CG-5723-01 19 44681808 44681808 A - ZNF226 Frame_Shift_Del p.K800Nfs*3 0.23 TCGA-CG-5723-01 19 44832877 44832877 A G ZNF112 Missense_Mutation p.L484S 0.28 tolerated(1) benign(0.001) TCGA-CG-5723-01 19 4512549 4512549 C T PLIN4 Missense_Mutation p.G461S 0.25 tolerated(0.19) possibly_damaging(0.826) TCGA-CG-5723-01 19 45202537 45202537 A G CEACAM16 Intron 0.28 TCGA-CG-5723-01 19 4523795 4523795 C T PLIN5 Silent p.A379A 0.20 TCGA-CG-5723-01 19 45574970 45574970 C T ZNF296 Silent p.T439T 0.21 TCGA-CG-5723-01 19 46288989 46288989 C T DMWD Missense_Mutation p.E589K 0.15 deleterious(0) possibly_damaging(0.874) TCGA-CG-5723-01 19 46375367 46375367 C - FOXA3 Frame_Shift_Del p.L37Sfs*5 0.25 TCGA-CG-5723-01 19 46890636 46890636 G A PPP5C Missense_Mutation p.G354D 0.29 deleterious(0) probably_damaging(1) TCGA-CG-5723-01 19 46914767 46914767 G A CCDC8 Missense_Mutation p.A434V 0.25 benign(0.129) TCGA-CG-5723-01 19 47280536 47280536 G A SLC1A5 Silent p.C395C 0.25 TCGA-CG-5723-01 19 47548656 47548656 C T NPAS1 Missense_Mutation p.P507L 0.20 tolerated(0.16) benign(0.001) TCGA-CG-5723-01 19 47991636 47991636 T C NAPA Missense_Mutation p.Y266C 0.18 deleterious(0) probably_damaging(0.996) TCGA-CG-5723-01 19 48565257 48565257 C T PLA2G4C Missense_Mutation p.E429K 0.27 deleterious(0.02) possibly_damaging(0.622) TCGA-CG-5723-01 19 49364680 49364681 - G PLEKHA4 Frame_Shift_Ins p.R115Pfs*22 0.20 TCGA-CG-5723-01 19 49448111 49448111 C T DHDH Missense_Mutation p.S309L 0.16 deleterious(0.05) benign(0) TCGA-CG-5723-01 19 49671859 49671859 T C TRPM4 Missense_Mutation p.V221A 0.19 tolerated(0.52) benign(0.007) TCGA-CG-5723-01 19 49949668 49949668 C T PIH1D1 Missense_Mutation p.A282T 0.27 tolerated(1) benign(0.009) TCGA-CG-5723-01 19 50059858 50059858 C T NOSIP Missense_Mutation p.V225M 0.38 deleterious(0) probably_damaging(0.995) TCGA-CG-5723-01 19 50548543 50548543 G A ZNF473 Nonsense_Mutation p.W281* 0.23 TCGA-CG-5723-01 19 50747580 50747580 T C MYH14 Missense_Mutation p.M399T 0.23 deleterious(0.03) benign(0.373) TCGA-CG-5723-01 19 51021091 51021091 C T LRRC4B Missense_Mutation p.A627T 0.25 tolerated_low_confidence(0.2) benign(0.009) TCGA-CG-5723-01 19 51462364 51462364 G A KLK6 3'UTR 0.23 TCGA-CG-5723-01 19 51535273 51535273 C T KLK12 Missense_Mutation p.E106K 0.50 tolerated(0.16) benign(0.324) TCGA-CG-5723-01 19 51961233 51961233 A G SIGLEC8 Missense_Mutation p.S137P 0.22 tolerated(0.28) possibly_damaging(0.637) TCGA-CG-5723-01 19 5244133 5244133 G A PTPRS Missense_Mutation p.P450L 0.07 deleterious(0) probably_damaging(0.995) TCGA-CG-5723-01 19 52659509 52659509 C T ZNF836 Missense_Mutation p.G476D 0.23 tolerated(0.12) probably_damaging(0.999) TCGA-CG-5723-01 19 52715983 52715983 G A PPP2R1A Missense_Mutation p.R183Q 0.22 deleterious(0) probably_damaging(0.997) TCGA-CG-5723-01 19 52724264 52724264 C A PPP2R1A Missense_Mutation p.L466M 0.05 deleterious(0.04) probably_damaging(0.914) TCGA-CG-5723-01 19 53158850 53158850 C T CTD-3099C6.9 5'Flank 0.26 TCGA-CG-5723-01 19 53793745 53793745 T C BIRC8 5'UTR 0.17 TCGA-CG-5723-01 19 53994075 53994075 C T ZNF813 Missense_Mutation p.R197W 0.24 tolerated(0.09) benign(0.003) TCGA-CG-5723-01 19 54314260 54314260 G A NLRP12 Missense_Mutation p.A218V 0.22 tolerated(0.07) possibly_damaging(0.821) TCGA-CG-5723-01 19 54515282 54515282 C - CACNG6 Frame_Shift_Del p.P209Rfs*21 0.35 TCGA-CG-5723-01 19 54669187 54669187 C T TMC4 Missense_Mutation p.R310Q 0.19 tolerated(0.38) benign(0.015) TCGA-CG-5723-01 19 54721312 54721312 G A LILRB3 Missense_Mutation p.T543M 0.19 tolerated(0.12) possibly_damaging(0.796) TCGA-CG-5723-01 19 54872811 54872811 G T LAIR1 Missense_Mutation p.L26M 0.20 deleterious(0.01) probably_damaging(0.969) TCGA-CG-5723-01 19 55086397 55086397 C T LILRA2 Silent p.P184P 0.21 TCGA-CG-5723-01 19 55174395 55174395 C T LILRB4 5'UTR 0.33 TCGA-CG-5723-01 19 55221981 55221981 C T AC098784.2 3'Flank 0.14 TCGA-CG-5723-01 19 55250015 55250015 C T KIR2DL3 Missense_Mutation p.S2L 0.30 tolerated_low_confidence(0.06) benign(0.004) TCGA-CG-5723-01 19 55263199 55263199 A - KIR2DL3 Frame_Shift_Del p.N274Mfs*4 0.35 TCGA-CG-5723-01 19 55295143 55295143 G A KIR2DL1 Missense_Mutation p.V309I 0.20 tolerated(0.6) possibly_damaging(0.854) TCGA-CG-5723-01 19 55451377 55451377 G A NLRP7 Silent p.C270C 0.26 TCGA-CG-5723-01 19 55481476 55481476 G A NLRP2 Silent p.T31T 0.16 TCGA-CG-5723-01 19 5592763 5592763 G A SAFB2 Silent p.I781I 0.26 TCGA-CG-5723-01 19 55993938 55993938 G T ZNF628 Missense_Mutation p.G460C 0.25 deleterious(0) probably_damaging(0.999) TCGA-CG-5723-01 19 57088950 57088950 C T ZNF470 Missense_Mutation p.R385C 0.22 deleterious(0) benign(0.116) TCGA-CG-5723-01 19 57286617 57286617 T C ZIM2 Silent p.V341V 0.18 TCGA-CG-5723-01 19 57984626 57984626 G A ZNF772 3'UTR 0.19 TCGA-CG-5723-01 19 58266024 58266024 T C ZNF776 Missense_Mutation p.V509A 0.23 deleterious(0.04) benign(0.161) TCGA-CG-5723-01 19 58385049 58385049 T C ZNF814 Missense_Mutation p.H570R 0.30 deleterious(0) benign(0.208) TCGA-CG-5723-01 19 58565039 58565039 C T ZSCAN1 Missense_Mutation p.P283S 0.07 tolerated(0.39) benign(0.017) TCGA-CG-5723-01 19 58598704 58598704 G A ZSCAN18 Silent p.D263D 0.23 TCGA-CG-5723-01 19 58806136 58806136 C T ZNF8 Missense_Mutation p.S321F 0.23 tolerated(0.15) probably_damaging(1) TCGA-CG-5723-01 19 58849911 58849911 C T ZSCAN22 Missense_Mutation p.A232V 0.22 tolerated(0.69) benign(0) TCGA-CG-5723-01 19 58967706 58967706 C T ZNF324B Silent p.G465G 0.19 TCGA-CG-5723-01 19 6002852 6002852 C T RFX2 Silent p.T510T 0.42 TCGA-CG-5723-01 19 6016119 6016119 G A RFX2 Missense_Mutation p.T254M 0.19 deleterious(0) probably_damaging(1) TCGA-CG-5723-01 19 621725 621725 G A POLRMT Missense_Mutation p.P658L 0.38 tolerated(0.05) benign(0.066) TCGA-CG-5723-01 19 6470356 6470356 G A DENND1C Missense_Mutation p.H438Y 0.42 deleterious(0.01) possibly_damaging(0.876) TCGA-CG-5723-01 19 6743586 6743586 G A TRIP10 Missense_Mutation p.A164T 0.28 tolerated(0.08) benign(0.425) TCGA-CG-5723-01 19 6754965 6754965 G - SH2D3A Frame_Shift_Del p.S287Pfs*38 0.24 TCGA-CG-5723-01 19 7573246 7573246 G A C19orf45 Missense_Mutation p.R483H 0.25 tolerated(0.54) benign(0.002) TCGA-CG-5723-01 19 758615 758615 C T MISP Missense_Mutation p.R557W 0.21 deleterious(0) probably_damaging(1) TCGA-CG-5723-01 19 7687494 7687494 G A XAB2 Silent p.P475P 0.14 TCGA-CG-5723-01 19 7754061 7754061 G A FCER2 3'UTR 0.29 TCGA-CG-5723-01 19 7805817 7805817 C T CD209 3'UTR 0.18 TCGA-CG-5723-01 19 7807842 7807842 C T CD209 3'UTR 0.19 TCGA-CG-5723-01 19 7830511 7830511 C T CLEC4M Intron 0.05 TCGA-CG-5723-01 19 7990265 7990265 C T CTXN1 Silent p.L53L 0.38 TCGA-CG-5723-01 19 815844 815844 A G LPPR3 Missense_Mutation p.I28T 0.17 deleterious(0) probably_damaging(0.923) TCGA-CG-5723-01 19 8651120 8651120 G A ADAMTS10 Missense_Mutation p.A849V 0.28 tolerated(0.29) benign(0.013) TCGA-CG-5723-01 19 877065 877065 T G MED16 Missense_Mutation p.D490A 0.12 deleterious(0.01) possibly_damaging(0.822) TCGA-CG-5723-01 19 9072974 9072974 C T MUC16 Silent p.T4824T 0.22 TCGA-CG-5723-01 19 9764462 9764462 A G ZNF562 Silent p.N148N 0.25 TCGA-CG-5723-01 1 10386385 10386385 C T KIF1B Silent p.Y918Y 0.21 TCGA-CG-5723-01 1 10425169 10425171 AGG - KIF1B In_Frame_Del p.R1416del 0.16 TCGA-CG-5723-01 1 10477532 10477532 G A PGD Missense_Mutation p.A359T 0.27 deleterious(0) probably_damaging(0.978) TCGA-CG-5723-01 1 109369851 109369851 C T AKNAD1 Missense_Mutation p.A638T 0.03 tolerated(0.13) benign(0.07) TCGA-CG-5723-01 1 109377583 109377583 G - AKNAD1 Frame_Shift_Del p.N545Tfs*13 0.22 TCGA-CG-5723-01 1 109823609 109823609 G A PSRC1 Missense_Mutation p.R232C 0.18 tolerated_low_confidence(0.11) benign(0.034) TCGA-CG-5723-01 1 109840109 109840109 C T MYBPHL Missense_Mutation p.R122H 0.21 tolerated(0.24) benign(0.005) TCGA-CG-5723-01 1 110032913 110032913 G A ATXN7L2 Silent p.R419R 0.21 TCGA-CG-5723-01 1 110129408 110129408 A G GNAI3 Missense_Mutation p.T260A 0.20 tolerated(1) benign(0.001) TCGA-CG-5723-01 1 110167985 110167985 C - AMPD2 Frame_Shift_Del p.C107Afs*80 0.25 TCGA-CG-5723-01 1 110737297 110737297 C T SLC6A17 Missense_Mutation p.L466F 0.21 deleterious(0) probably_damaging(0.983) TCGA-CG-5723-01 1 110765858 110765858 C T KCNC4 Silent p.I317I 0.22 TCGA-CG-5723-01 1 111146620 111146620 G A KCNA2 Missense_Mutation p.A262V 0.20 deleterious(0) probably_damaging(0.944) TCGA-CG-5723-01 1 11115064 11115064 G A SRM Silent p.S281S 0.22 TCGA-CG-5723-01 1 111784915 111784915 A G CHI3L2 Missense_Mutation p.T368A 0.20 tolerated(0.5) benign(0.045) TCGA-CG-5723-01 1 11307985 11307985 T C MTOR Missense_Mutation p.Y336C 0.27 tolerated(0.08) possibly_damaging(0.785) TCGA-CG-5723-01 1 11345717 11345717 C T UBIAD1 Silent p.Y182Y 0.23 TCGA-CG-5723-01 1 115118337 115118337 T - BCAS2 Frame_Shift_Del p.N98Mfs*10 0.26 TCGA-CG-5723-01 1 1153955 1153955 G A SDF4 Silent p.T265T 0.19 TCGA-CG-5723-01 1 115430252 115430252 A - SYCP1 Frame_Shift_Del p.N401Mfs*5 0.16 TCGA-CG-5723-01 1 117122210 117122210 G A IGSF3 Silent p.G1066G 0.25 TCGA-CG-5723-01 1 117156664 117156664 C T IGSF3 Silent p.R185R 0.15 TCGA-CG-5723-01 1 118527387 118527387 T G SPAG17 Silent p.T1896T 0.15 TCGA-CG-5723-01 1 11889314 11889314 G C CLCN6 Missense_Mutation p.V395L 0.24 tolerated(0.7) benign(0.002) TCGA-CG-5723-01 1 119575473 119575473 C T WARS2 3'UTR 0.21 TCGA-CG-5723-01 1 119575832 119575832 A G WARS2 Missense_Mutation p.V262A 0.17 deleterious(0) possibly_damaging(0.578) TCGA-CG-5723-01 1 120462059 120462059 C T NOTCH2 Missense_Mutation p.R1886H 0.15 deleterious(0) probably_damaging(0.998) TCGA-CG-5723-01 1 12569099 12569099 C T VPS13D 3'UTR 0.22 TCGA-CG-5723-01 1 1267095 1267095 T C TAS1R3 Missense_Mutation p.L90P 0.11 deleterious(0) probably_damaging(0.998) TCGA-CG-5723-01 1 12725975 12725975 C T AADACL4 Silent p.Y151Y 0.16 TCGA-CG-5723-01 1 12907847 12907847 C T HNRNPCL1 Missense_Mutation p.R99Q 0.10 tolerated(0.05) benign(0.028) TCGA-CG-5723-01 1 14105507 14105507 G A PRDM2 Missense_Mutation p.R406Q 0.26 probably_damaging(1) TCGA-CG-5723-01 1 14107336 14107336 G A PRDM2 Missense_Mutation p.A1016T 0.18 unknown(0) TCGA-CG-5723-01 1 144882530 144882530 T C PDE4DIP Silent p.Q1163Q 0.07 TCGA-CG-5723-01 1 144994711 144994711 A C PDE4DIP Silent p.T7T 0.05 TCGA-CG-5723-01 1 145474257 145474258 CT - ANKRD34A Frame_Shift_Del p.R313Pfs*37 0.14 TCGA-CG-5723-01 1 146696691 146696691 A G FMO5 Intron 0.27 TCGA-CG-5723-01 1 147091961 147091961 G A BCL9 Missense_Mutation p.R667H 0.22 deleterious(0.01) probably_damaging(0.984) TCGA-CG-5723-01 1 148594462 148594462 A G NBPF15 Missense_Mutation p.Y612C 0.21 deleterious(0.01) probably_damaging(0.996) TCGA-CG-5723-01 1 149872116 149872116 G T BOLA1 3'Flank 0.35 TCGA-CG-5723-01 1 150128314 150128314 T C PLEKHO1 Missense_Mutation p.C78R 0.30 deleterious(0) possibly_damaging(0.904) TCGA-CG-5723-01 1 151109008 151109008 C T SEMA6C Missense_Mutation p.R341H 0.19 tolerated(0.14) benign(0) TCGA-CG-5723-01 1 151261869 151261869 C T ZNF687 Silent p.C829C 0.15 TCGA-CG-5723-01 1 152192304 152192304 C T HRNR Missense_Mutation p.G601R 0.24 unknown(0) TCGA-CG-5723-01 1 152382676 152382676 G A CRNN Silent p.H294H 0.23 TCGA-CG-5723-01 1 153910311 153910311 G A DENND4B Missense_Mutation p.P665L 0.27 deleterious(0.01) benign(0.001) TCGA-CG-5723-01 1 154574993 154574993 T C ADAR Missense_Mutation p.K42R 0.25 tolerated(0.13) benign(0.005) TCGA-CG-5723-01 1 155152112 155152112 T C TRIM46 Silent p.P430P 0.14 TCGA-CG-5723-01 1 155920909 155920909 G A ARHGEF2 Missense_Mutation p.A805V 0.19 tolerated(0.11) benign(0.217) TCGA-CG-5723-01 1 156047125 156047125 A G MEX3A Missense_Mutation p.F268S 0.34 deleterious(0.01) probably_damaging(0.996) TCGA-CG-5723-01 1 156905713 156905713 C - ARHGEF11 3'UTR 0.31 TCGA-CG-5723-01 1 156917127 156917127 G A ARHGEF11 Silent p.F819F 0.20 TCGA-CG-5723-01 1 157665908 157665908 C T FCRL3 Missense_Mutation p.D352N 0.16 tolerated(0.17) possibly_damaging(0.67) TCGA-CG-5723-01 1 157667790 157667790 C A FCRL3 Intron 0.10 TCGA-CG-5723-01 1 158061243 158061243 C T KIRREL Silent p.L456L 0.25 TCGA-CG-5723-01 1 15892742 15892742 C T DNAJC16 Intron 0.31 TCGA-CG-5723-01 1 159796723 159796723 G T SLAMF8 Missense_Mutation p.W12L 0.21 tolerated_low_confidence(0.07) benign(0.307) TCGA-CG-5723-01 1 159799686 159799686 A G SLAMF8 Missense_Mutation p.Q24R 0.27 deleterious(0.03) benign(0.031) TCGA-CG-5723-01 1 159842872 159842872 C T CCDC19 Missense_Mutation p.R480H 0.26 deleterious(0.05) benign(0.384) TCGA-CG-5723-01 1 159889527 159889527 G A TAGLN2 Silent p.I93I 0.19 TCGA-CG-5723-01 1 159912853 159912853 C T IGSF9 Silent p.R49R 0.29 TCGA-CG-5723-01 1 160091015 160091015 C T ATP1A2 Missense_Mutation p.R51C 0.19 deleterious(0.02) possibly_damaging(0.544) TCGA-CG-5723-01 1 160104956 160104956 G A ATP1A2 Silent p.V662V 0.27 TCGA-CG-5723-01 1 16071011 16071011 G A TMEM82 Silent p.S231S 0.25 TCGA-CG-5723-01 1 161163532 161163532 G T ADAMTS4 Silent p.R545R 0.25 TCGA-CG-5723-01 1 161298208 161298208 G A SDHC Missense_Mutation p.A34T 0.19 deleterious(0.05) probably_damaging(0.96) TCGA-CG-5723-01 1 161642933 161642933 A G FCGR2B Missense_Mutation p.N187S 0.17 deleterious(0.01) possibly_damaging(0.485) TCGA-CG-5723-01 1 161969979 161969979 G T OLFML2B Silent p.S291S 0.22 TCGA-CG-5723-01 1 16377497 16377497 C T CLCNKB Missense_Mutation p.P394L 0.21 deleterious(0) probably_damaging(0.957) TCGA-CG-5723-01 1 167097443 167097443 G A DUSP27 Silent p.T1025T 0.18 TCGA-CG-5723-01 1 168059836 168059836 C T GPR161 Silent p.T410T 0.19 TCGA-CG-5723-01 1 168262443 168262443 C T TBX19 Missense_Mutation p.A177V 0.21 tolerated(0.1) benign(0.021) TCGA-CG-5723-01 1 168550351 168550351 G A XCL1 Missense_Mutation p.V80M 0.24 deleterious(0.03) benign(0.115) TCGA-CG-5723-01 1 171254496 171254496 A G FMO1 Missense_Mutation p.Y471C 0.18 deleterious(0.01) probably_damaging(0.983) TCGA-CG-5723-01 1 172520731 172520731 G A SUCO Missense_Mutation p.A48T 0.23 deleterious_low_confidence(0.01) benign(0.251) TCGA-CG-5723-01 1 172558904 172558904 A G SUCO Missense_Mutation p.Y888C 0.16 deleterious(0) probably_damaging(0.999) TCGA-CG-5723-01 1 17331318 17331318 T C ATP13A2 Splice_Site p.X116_splice 0.14 TCGA-CG-5723-01 1 173883880 173883880 C T SERPINC1 Silent p.P73P 0.24 TCGA-CG-5723-01 1 174417662 174417662 A G GPR52 Missense_Mutation p.D138G 0.26 deleterious(0) probably_damaging(0.999) TCGA-CG-5723-01 1 175067522 175067522 C T TNN Missense_Mutation p.T637M 0.25 deleterious(0.01) probably_damaging(0.951) TCGA-CG-5723-01 1 175096130 175096130 C T TNN Missense_Mutation p.T985M 0.19 deleterious(0) probably_damaging(0.989) TCGA-CG-5723-01 1 175334334 175334334 G - TNR Frame_Shift_Del p.P800Qfs*18 0.22 TCGA-CG-5723-01 1 178421675 178421675 G A RASAL2 Missense_Mutation p.A633T 0.21 deleterious(0) possibly_damaging(0.606) TCGA-CG-5723-01 1 179078139 179078139 G A ABL2 Missense_Mutation p.R755C 0.23 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CG-5723-01 1 179599927 179599928 - A TDRD5 Frame_Shift_Ins p.L336Ifs*14 0.25 TCGA-CG-5723-01 1 179887298 179887298 G A TOR1AIP1 Missense_Mutation p.G559D 0.26 deleterious(0) probably_damaging(1) TCGA-CG-5723-01 1 180241138 180241138 C T LHX4 Nonsense_Mutation p.R259* 0.19 TCGA-CG-5723-01 1 183212369 183212369 G A LAMC2 Missense_Mutation p.R1139Q 0.27 tolerated(0.26) benign(0.012) TCGA-CG-5723-01 1 183538297 183538297 C T NCF2 Silent p.P231P 0.24 TCGA-CG-5723-01 1 183881395 183881395 A - RGL1 Frame_Shift_Del p.K618Sfs*25 0.22 TCGA-CG-5723-01 1 185153933 185153936 GAAG - SWT1 Frame_Shift_Del p.G436Nfs*3 0.12 TCGA-CG-5723-01 1 18661444 18661444 G A IGSF21 Missense_Mutation p.D122N 0.28 tolerated(0.11) benign(0.109) TCGA-CG-5723-01 1 18691970 18691970 T C IGSF21 Missense_Mutation p.I265T 0.20 tolerated(0.14) benign(0.02) TCGA-CG-5723-01 1 192545493 192545493 T C RGS1 Silent p.D72D 0.24 TCGA-CG-5723-01 1 193150734 193150734 A - B3GALT2 5'UTR 0.16 TCGA-CG-5723-01 1 19401431 19401431 T A UBR4 Intron 0.31 TCGA-CG-5723-01 1 19549974 19549974 G A EMC1 Silent p.G764G 0.28 TCGA-CG-5723-01 1 197145703 197145703 T - ZBTB41 Frame_Shift_Del p.I624Yfs*88 0.17 TCGA-CG-5723-01 1 198711039 198711039 G A PTPRC Silent p.Q815Q 0.16 TCGA-CG-5723-01 1 198828243 198828243 C A MIR181A1 RNA 0.22 TCGA-CG-5723-01 1 200968549 200968549 G A KIF21B Missense_Mutation p.R605C 0.21 tolerated(0.05) benign(0.333) TCGA-CG-5723-01 1 201750232 201750232 C T NAV1 Silent p.Y486Y 0.21 TCGA-CG-5723-01 1 201779831 201779831 G A NAV1 Missense_Mutation p.R1581H 0.18 deleterious(0.02) probably_damaging(0.975) TCGA-CG-5723-01 1 201926647 201926647 C G TIMM17A Missense_Mutation p.N45K 0.19 tolerated(0.35) benign(0.004) TCGA-CG-5723-01 1 202304853 202304854 CT - UBE2T Frame_Shift_Del p.E10Afs*18 0.21 TCGA-CG-5723-01 1 202710666 202710666 T G KDM5B Missense_Mutation p.Q925P 0.22 tolerated(0.17) possibly_damaging(0.723) TCGA-CG-5723-01 1 203821512 203821512 A G ZC3H11A Silent p.E806E 0.19 TCGA-CG-5723-01 1 204091075 204091075 A G SOX13 Missense_Mutation p.K275E 0.22 tolerated(0.06) benign(0.206) TCGA-CG-5723-01 1 204170877 204170879 GAA - GOLT1A In_Frame_Del p.F60del 0.20 TCGA-CG-5723-01 1 204228411 204228411 C - PLEKHA6 Frame_Shift_Del p.V328Yfs*172 0.26 TCGA-CG-5723-01 1 206574962 206574962 C - SRGAP2 Frame_Shift_Del p.P254Lfs*2 0.09 TCGA-CG-5723-01 1 207644832 207644832 C T CR2 Missense_Mutation p.R520C 0.23 deleterious(0) possibly_damaging(0.88) TCGA-CG-5723-01 1 207850873 207850873 A - CR1L Frame_Shift_Del p.N81Tfs*23 0.20 TCGA-CG-5723-01 1 209797343 209797343 C T LAMB3 Missense_Mutation p.R660Q 0.26 tolerated(0.54) benign(0.001) TCGA-CG-5723-01 1 209963054 209963054 C T IRF6 Nonsense_Mutation p.W379* 0.17 TCGA-CG-5723-01 1 21042044 21042044 G A KIF17 Missense_Mutation p.P107L 0.16 deleterious(0.03) benign(0.024) TCGA-CG-5723-01 1 211923141 211923141 T - LPGAT1 3'UTR 0.19 TCGA-CG-5723-01 1 212532095 212532095 G A PPP2R5A Missense_Mutation p.D432N 0.24 deleterious(0.01) benign(0.058) TCGA-CG-5723-01 1 214706300 214706300 C T PTPN14 Intron 0.27 TCGA-CG-5723-01 1 218520021 218520021 T - TGFB2 5'UTR 0.33 TCGA-CG-5723-01 1 220363750 220363750 T - RAB3GAP2 Frame_Shift_Del p.T534Qfs*2 0.26 TCGA-CG-5723-01 1 220835431 220835431 C T MARK1 Missense_Mutation p.R771C 0.24 deleterious(0) probably_damaging(0.982) TCGA-CG-5723-01 1 22150206 22150206 G A HSPG2 Silent p.G4302G 0.28 TCGA-CG-5723-01 1 22214000 22214000 C T HSPG2 Missense_Mutation p.A291T 0.19 benign(0.006) TCGA-CG-5723-01 1 222716949 222716949 C A HHIPL2 Nonsense_Mutation p.E302* 0.20 TCGA-CG-5723-01 1 222802793 222802793 A - MIA3 Frame_Shift_Del p.N746Tfs*21 0.20 TCGA-CG-5723-01 1 222922880 222922880 C T FAM177B Silent p.N105N 0.17 TCGA-CG-5723-01 1 226026384 226026384 C - EPHX1 Frame_Shift_Del p.Q134Sfs*12 0.29 TCGA-CG-5723-01 1 226034752 226034752 G - TMEM63A Frame_Shift_Del p.Q805Rfs*25 0.21 TCGA-CG-5723-01 1 226259158 226259158 G A H3F3A Missense_Mutation p.R130H 0.26 tolerated_low_confidence(0.08) benign(0.005) TCGA-CG-5723-01 1 226924312 226924312 G A ITPKB Missense_Mutation p.P283L 0.30 tolerated_low_confidence(0.13) benign(0.001) TCGA-CG-5723-01 1 228345575 228345575 C T GJC2 Missense_Mutation p.T39M 0.28 deleterious(0) probably_damaging(0.999) TCGA-CG-5723-01 1 228466411 228466411 G A OBSCN Missense_Mutation p.R2723H 0.22 probably_damaging(0.968) TCGA-CG-5723-01 1 228480371 228480371 T C OBSCN Missense_Mutation p.L4013P 0.31 probably_damaging(0.964) TCGA-CG-5723-01 1 228505745 228505745 C T OBSCN Missense_Mutation p.R5625W 0.19 probably_damaging(0.989) TCGA-CG-5723-01 1 228548354 228548354 C A OBSCN Intron 0.26 TCGA-CG-5723-01 1 228645532 228645532 A - HIST3H2A 5'UTR 0.26 TCGA-CG-5723-01 1 22902954 22902954 C T EPHA8 Missense_Mutation p.A135V 0.13 tolerated(0.31) benign(0.13) TCGA-CG-5723-01 1 229606455 229606455 C T NUP133 Missense_Mutation p.A650T 0.18 tolerated(0.07) probably_damaging(0.989) TCGA-CG-5723-01 1 2318864 2318864 G A MORN1 Missense_Mutation p.R118W 0.10 deleterious(0) probably_damaging(0.998) TCGA-CG-5723-01 1 232650507 232650507 T C SIPA1L2 Silent p.G193G 0.23 TCGA-CG-5723-01 1 233802452 233802452 T C KCNK1 Missense_Mutation p.I156T 0.25 deleterious(0) benign(0.225) TCGA-CG-5723-01 1 235409788 235409788 A - ARID4B Frame_Shift_Del p.F131Lfs*6 0.22 TCGA-CG-5723-01 1 236189283 236189283 G T NID1 Missense_Mutation p.L633I 0.19 deleterious(0) possibly_damaging(0.828) TCGA-CG-5723-01 1 236371377 236371377 A G GPR137B Silent p.G373G 0.16 TCGA-CG-5723-01 1 236719118 236719118 G A HEATR1 Missense_Mutation p.A1879V 0.28 tolerated(0.12) benign(0.053) TCGA-CG-5723-01 1 236721561 236721561 G A HEATR1 Missense_Mutation p.A1727V 0.22 deleterious(0) possibly_damaging(0.528) TCGA-CG-5723-01 1 236925802 236925802 G A ACTN2 Silent p.P856P 0.18 TCGA-CG-5723-01 1 240255930 240255930 G T FMN2 Missense_Mutation p.R174M 0.14 unknown(0) TCGA-CG-5723-01 1 24078404 24078404 A - TCEB3 Frame_Shift_Del p.N465Mfs*19 0.39 TCGA-CG-5723-01 1 2415898 2415898 G A PLCH2 Silent p.T192T 0.26 TCGA-CG-5723-01 1 243289821 243289821 G A CEP170 Missense_Mutation p.A1562V 0.26 tolerated_low_confidence(0.17) benign(0.423) TCGA-CG-5723-01 1 245849899 245849899 G A KIF26B Missense_Mutation p.G1205D 0.30 deleterious(0) unknown(0) TCGA-CG-5723-01 1 246729434 246729434 T A TFB2M Missense_Mutation p.I3F 0.20 tolerated(0.08) benign(0.069) TCGA-CG-5723-01 1 246823624 246823624 A G CNST Missense_Mutation p.S654G 0.28 tolerated(0.07) benign(0.001) TCGA-CG-5723-01 1 247875954 247875954 T C OR6F1 Missense_Mutation p.Y35C 0.23 deleterious(0) probably_damaging(1) TCGA-CG-5723-01 1 26156309 26156310 AG - MTFR1L Frame_Shift_Del p.Q256Rfs*18 0.22 TCGA-CG-5723-01 1 27158994 27158996 TCT - ZDHHC18 In_Frame_Del p.F134del 0.15 TCGA-CG-5723-01 1 27177668 27177668 C T ZDHHC18 Silent p.G294G 0.29 TCGA-CG-5723-01 1 27622887 27622888 - G WDTC1 Frame_Shift_Ins 0.20 TCGA-CG-5723-01 1 28285220 28285220 C T SMPDL3B Silent p.H413H 0.20 TCGA-CG-5723-01 1 28905063 28905064 - T TRNAU1AP 3'Flank 0.28 TCGA-CG-5723-01 1 2939367 2939367 C A ACTRT2 Missense_Mutation p.Q373K 0.19 deleterious(0.01) probably_damaging(0.938) TCGA-CG-5723-01 1 31187163 31187163 A G MATN1 Missense_Mutation p.C458R 0.20 deleterious(0) probably_damaging(0.992) TCGA-CG-5723-01 1 31902257 31902257 C - AC114494.1 Frame_Shift_Del p.V120Lfs*? 0.13 TCGA-CG-5723-01 1 32084832 32084832 C - HCRTR1 Frame_Shift_Del p.P15Lfs*63 0.30 TCGA-CG-5723-01 1 32834083 32834083 G A BSDC1 Nonsense_Mutation p.Q426* 0.27 TCGA-CG-5723-01 1 33292032 33292032 C A S100PBP Missense_Mutation p.P111H 0.27 deleterious(0) probably_damaging(0.946) TCGA-CG-5723-01 1 3410383 3410383 C T MEGF6 Missense_Mutation p.G1447S 0.21 tolerated(0.07) probably_damaging(1) TCGA-CG-5723-01 1 3417655 3417655 C T MEGF6 Missense_Mutation p.C817Y 0.18 deleterious(0) probably_damaging(0.999) TCGA-CG-5723-01 1 3421847 3421847 C T MEGF6 Missense_Mutation p.V705M 0.17 deleterious(0.03) possibly_damaging(0.781) TCGA-CG-5723-01 1 35919162 35919162 T - KIAA0319L Frame_Shift_Del p.T637Hfs*19 0.24 TCGA-CG-5723-01 1 36028847 36028847 C A NCDN Missense_Mutation p.P477H 0.20 deleterious(0) probably_damaging(0.989) TCGA-CG-5723-01 1 36755130 36755130 C T THRAP3 Missense_Mutation p.R504W 0.21 deleterious(0) probably_damaging(0.978) TCGA-CG-5723-01 1 36883724 36883724 C T OSCP1 3'UTR 0.12 TCGA-CG-5723-01 1 38444662 38444662 G A SF3A3 Silent p.G275G 0.21 TCGA-CG-5723-01 1 39751055 39751055 T C MACF1 Missense_Mutation p.L454P 0.23 benign(0.028) TCGA-CG-5723-01 1 39758498 39758498 C T MACF1 Nonsense_Mutation p.Q664* 0.17 TCGA-CG-5723-01 1 39851380 39851380 T C MACF1 Missense_Mutation p.V2646A 0.30 benign(0.001) TCGA-CG-5723-01 1 40230521 40230521 G A BMP8B Intron 0.19 TCGA-CG-5723-01 1 41461820 41461820 C T CTPS1 Intron 0.18 TCGA-CG-5723-01 1 42048809 42048809 G - HIVEP3 Frame_Shift_Del p.H554Tfs*20 0.28 TCGA-CG-5723-01 1 42049096 42049096 C T HIVEP3 Missense_Mutation p.R458Q 0.20 probably_damaging(0.996) TCGA-CG-5723-01 1 43675514 43675514 G A WDR65 Missense_Mutation p.R619H 0.24 deleterious(0) probably_damaging(0.993) TCGA-CG-5723-01 1 43828733 43828733 C T CDC20 Missense_Mutation p.A478V 0.27 tolerated(0.41) benign(0) TCGA-CG-5723-01 1 44075164 44075164 C - PTPRF Frame_Shift_Del p.P1324Qfs*51 0.21 TCGA-CG-5723-01 1 45478566 45478566 A G UROD Intron 0.23 TCGA-CG-5723-01 1 45793679 45793679 T C HPDL Missense_Mutation p.Y287H 0.21 deleterious(0) probably_damaging(0.962) TCGA-CG-5723-01 1 45808454 45808454 A - TOE1 Intron 0.14 TCGA-CG-5723-01 1 46193312 46193312 C T IPP Missense_Mutation p.A347T 0.21 deleterious(0.05) probably_damaging(0.969) TCGA-CG-5723-01 1 46500323 46500323 C T MAST2 Missense_Mutation p.R1328C 0.23 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CG-5723-01 1 46978015 46978016 GT - DMBX1 Frame_Shift_Del p.W330Gfs*22 0.24 TCGA-CG-5723-01 1 47746581 47746581 G - STIL Frame_Shift_Del p.H517Ifs*37 0.19 TCGA-CG-5723-01 1 52859407 52859407 G A ORC1 Missense_Mutation p.R264W 0.20 deleterious(0) probably_damaging(0.983) TCGA-CG-5723-01 1 53732282 53732282 G A LRP8 Silent p.H430H 0.19 TCGA-CG-5723-01 1 60491079 60491079 T C C1orf87 Missense_Mutation p.E374G 0.22 tolerated(0.06) probably_damaging(0.989) TCGA-CG-5723-01 1 61554228 61554228 T C NFIA Silent p.T190T 0.19 TCGA-CG-5723-01 1 62676034 62676034 C T L1TD1 Missense_Mutation p.H530Y 0.18 tolerated_low_confidence(0.08) benign(0.141) TCGA-CG-5723-01 1 63789483 63789483 A G FOXD3 Missense_Mutation p.M252V 0.21 tolerated(0.13) benign(0.049) TCGA-CG-5723-01 1 6530390 6530390 T C PLEKHG5 Missense_Mutation p.D648G 0.34 deleterious(0) probably_damaging(0.981) TCGA-CG-5723-01 1 66085623 66085623 C A LEPR Missense_Mutation p.P803H 0.17 deleterious(0.02) probably_damaging(0.971) TCGA-CG-5723-01 1 67160137 67160137 T - SGIP1 Intron 0.20 TCGA-CG-5723-01 1 68603590 68603590 G A WLS Silent p.G461G 0.33 TCGA-CG-5723-01 1 70493956 70493956 C T LRRC7 Missense_Mutation p.R595C 0.24 deleterious(0) possibly_damaging(0.891) TCGA-CG-5723-01 1 72163744 72163744 G A NEGR1 Missense_Mutation p.A205V 0.26 deleterious(0) probably_damaging(0.997) TCGA-CG-5723-01 1 74649222 74649222 G A LRRIQ3 Silent p.C49C 0.08 TCGA-CG-5723-01 1 77333305 77333305 A G ST6GALNAC5 5'UTR 0.26 TCGA-CG-5723-01 1 77752792 77752792 G A AK5 Missense_Mutation p.R76Q 0.23 tolerated(0.13) probably_damaging(0.943) TCGA-CG-5723-01 1 8390770 8390770 G A SLC45A1 Missense_Mutation p.R406Q 0.36 tolerated(0.1) benign(0.009) TCGA-CG-5723-01 1 85136475 85136475 T C SSX2IP Missense_Mutation p.T23A 0.18 tolerated(0.13) possibly_damaging(0.471) TCGA-CG-5723-01 1 85431290 85431290 C T MCOLN2 Missense_Mutation p.R60H 0.15 tolerated(0.31) benign(0.001) TCGA-CG-5723-01 1 86249817 86249817 G T COL24A1 Missense_Mutation p.F1400L 0.22 tolerated(0.23) benign(0.061) TCGA-CG-5723-01 1 8684392 8684392 A G RERE Missense_Mutation p.C125R 0.17 possibly_damaging(0.866) TCGA-CG-5723-01 1 87026013 87026013 A - CLCA4 Frame_Shift_Del p.K142Nfs*96 0.19 TCGA-CG-5723-01 1 87029383 87029383 G C CLCA4 Missense_Mutation p.G163A 0.20 deleterious(0) probably_damaging(1) TCGA-CG-5723-01 1 886561 886561 C T NOC2L Silent p.T463T 0.25 TCGA-CG-5723-01 1 89834232 89834233 - GGC GBP6 In_Frame_Ins p.A42dup 0.26 TCGA-CG-5723-01 1 90048284 90048284 C T LRRC8B Silent p.D25D 0.17 TCGA-CG-5723-01 1 90473107 90473107 G A ZNF326 Missense_Mutation p.R138H 0.22 tolerated(0.09) probably_damaging(0.964) TCGA-CG-5723-01 1 91781412 91781412 C T HFM1 Missense_Mutation p.G1034S 0.20 deleterious(0) probably_damaging(0.999) TCGA-CG-5723-01 1 91843716 91843716 G A HFM1 Missense_Mutation p.R421C 0.25 deleterious(0) probably_damaging(1) TCGA-CG-5723-01 1 92443769 92443769 G A BRDT Silent p.A338A 0.22 TCGA-CG-5723-01 1 92595319 92595319 C T BTBD8 Silent p.Y246Y 0.20 TCGA-CG-5723-01 1 92712097 92712097 C T GLMN Missense_Mutation p.G592E 0.10 tolerated_low_confidence(0.06) benign(0.002) TCGA-CG-5723-01 1 94495142 94495142 C T ABCA4 Silent p.V1466V 0.12 TCGA-CG-5723-01 1 9714277 9714277 G A C1orf200 Missense_Mutation p.A73V 0.09 deleterious_low_confidence(0) possibly_damaging(0.682) TCGA-CG-5723-01 1 9784903 9784903 G A PIK3CD Missense_Mutation p.R969H 0.18 deleterious(0) probably_damaging(0.94) TCGA-CG-5723-01 20 10620527 10620527 G A JAG1 Silent p.C1092C 0.16 TCGA-CG-5723-01 20 1277814 1277814 C T SNPH Missense_Mutation p.R26W 0.18 deleterious(0) probably_damaging(0.992) TCGA-CG-5723-01 20 13140674 13140675 - A SPTLC3 Frame_Shift_Ins p.I483Nfs*39 0.19 TCGA-CG-5723-01 20 17417441 17417441 C T PCSK2 Silent p.S266S 0.33 TCGA-CG-5723-01 20 20586055 20586055 G A RALGAPA2 Missense_Mutation p.T601M 0.20 deleterious(0) probably_damaging(0.998) TCGA-CG-5723-01 20 210188 210188 T - DEFB129 Frame_Shift_Del p.F111Lfs*15 0.20 TCGA-CG-5723-01 20 25059455 25059455 C - VSX1 Intron 0.20 TCGA-CG-5723-01 20 30370135 30370135 G A TPX2 Missense_Mutation p.A380T 0.23 deleterious(0.01) benign(0.077) TCGA-CG-5723-01 20 30897550 30897550 T G KIF3B 5'UTR 0.16 TCGA-CG-5723-01 20 31805219 31805219 G T BPIFA3 5'UTR 0.23 TCGA-CG-5723-01 20 33331070 33331070 G - NCOA6 Frame_Shift_Del p.P997Hfs*37 0.19 TCGA-CG-5723-01 20 33582173 33582175 AGA - MYH7B In_Frame_Del p.K933del 0.36 TCGA-CG-5723-01 20 34025210 34025211 - G GDF5 Frame_Shift_Ins p.I167Hfs*18 0.29 TCGA-CG-5723-01 20 35176475 35176475 C T MYL9 Silent p.S75S 0.17 TCGA-CG-5723-01 20 36022344 36022344 G - SRC Frame_Shift_Del p.G133Afs*70 0.27 TCGA-CG-5723-01 20 37638972 37638972 T C DHX35 Silent p.R424R 0.20 TCGA-CG-5723-01 20 3780933 3780933 A C CDC25B Splice_Site p.X127_splice 0.23 TCGA-CG-5723-01 20 3844972 3844972 G A MAVS Missense_Mutation p.R232H 0.25 deleterious(0) probably_damaging(0.961) TCGA-CG-5723-01 20 41306614 41306614 G A PTPRT Missense_Mutation p.H349Y 0.22 deleterious(0) probably_damaging(0.99) TCGA-CG-5723-01 20 4164225 4164225 C T SMOX Missense_Mutation p.T485M 0.18 deleterious(0.01) probably_damaging(0.995) TCGA-CG-5723-01 20 42195105 42195105 C - SGK2 Frame_Shift_Del p.P52Qfs*10 0.21 TCGA-CG-5723-01 20 42302493 42302493 C T MYBL2 Missense_Mutation p.P23L 0.50 tolerated(0.15) benign(0.004) TCGA-CG-5723-01 20 42788479 42788479 G A JPH2 Silent p.G316G 0.22 TCGA-CG-5723-01 20 43057109 43057109 C T HNF4A Nonsense_Mutation p.R422* 0.22 TCGA-CG-5723-01 20 44518902 44518902 C A NEURL2 Missense_Mutation p.Q243H 0.15 tolerated(0.09) possibly_damaging(0.885) TCGA-CG-5723-01 20 44597067 44597067 T C ZNF335 Intron 0.25 TCGA-CG-5723-01 20 44673727 44673727 C - SLC12A5 Frame_Shift_Del p.P530Hfs*34 0.21 TCGA-CG-5723-01 20 45140720 45140720 C T ZNF334 Splice_Site p.X7_splice 0.21 TCGA-CG-5723-01 20 4680491 4680491 G A PRNP Missense_Mutation p.V209M 0.08 deleterious(0.02) benign(0.18) TCGA-CG-5723-01 20 47845427 47845427 T C DDX27 Splice_Site p.X325_splice 0.41 TCGA-CG-5723-01 20 47863656 47863656 G A ZNFX1 3'UTR 0.38 TCGA-CG-5723-01 20 47989891 47989891 G - KCNB1 Frame_Shift_Del p.R736Gfs*9 0.25 TCGA-CG-5723-01 20 4850638 4850638 G A SLC23A2 Silent p.V388V 0.27 TCGA-CG-5723-01 20 49214161 49214161 G A FAM65C Silent p.F578F 0.21 TCGA-CG-5723-01 20 49576679 49576679 T C MOCS3 Silent p.L434L 0.28 TCGA-CG-5723-01 20 49626567 49626567 G A KCNG1 Silent p.N103N 0.25 TCGA-CG-5723-01 20 50768821 50768821 T C ZFP64 Missense_Mutation p.N637S 0.19 tolerated(1) benign(0) TCGA-CG-5723-01 20 50769100 50769100 C T ZFP64 Missense_Mutation p.R544H 0.21 tolerated(0.3) benign(0.011) TCGA-CG-5723-01 20 50769117 50769117 G T ZFP64 Missense_Mutation p.S538R 0.14 deleterious(0.03) benign(0.03) TCGA-CG-5723-01 20 54579052 54579052 G - CBLN4 Frame_Shift_Del p.P59Rfs*28 0.27 TCGA-CG-5723-01 20 54978560 54978560 A G CSTF1 Missense_Mutation p.Q358R 0.21 tolerated(0.05) benign(0.064) TCGA-CG-5723-01 20 56078505 56078505 G A CTCFL Silent p.A609A 0.24 TCGA-CG-5723-01 20 57564987 57564987 G - NELFCD Frame_Shift_Del p.G264Afs*27 0.23 TCGA-CG-5723-01 20 60348097 60348097 T C CDH4 Silent p.S145S 0.22 TCGA-CG-5723-01 20 60498692 60498692 G A CDH4 Missense_Mutation p.V520M 0.20 tolerated(0.23) benign(0.149) TCGA-CG-5723-01 20 60770906 60770906 G A MTG2 Missense_Mutation p.G85R 0.17 deleterious(0) probably_damaging(1) TCGA-CG-5723-01 20 61510982 61510982 G A DIDO1 Missense_Mutation p.A2109V 0.24 benign(0.003) TCGA-CG-5723-01 20 61512957 61512957 C A DIDO1 Missense_Mutation p.D1451Y 0.25 probably_damaging(0.934) TCGA-CG-5723-01 20 61828003 61828003 G A YTHDF1 3'UTR 0.19 TCGA-CG-5723-01 20 61881322 61881322 C A NKAIN4 Missense_Mutation p.G53C 0.28 deleterious(0) probably_damaging(0.988) TCGA-CG-5723-01 20 61907543 61907543 T G ARFGAP1 Missense_Mutation p.V54G 0.25 deleterious(0) probably_damaging(0.965) TCGA-CG-5723-01 20 61939423 61939423 G - COL20A1 Frame_Shift_Del p.N255Tfs*8 0.33 TCGA-CG-5723-01 20 62194495 62194495 C T HELZ2 Missense_Mutation p.G1894S 0.33 deleterious(0) probably_damaging(1) TCGA-CG-5723-01 20 62321137 62321137 C T RTEL1 Missense_Mutation p.A711V 0.28 deleterious(0) probably_damaging(1) TCGA-CG-5723-01 20 62591325 62591325 G A ZNF512B Silent p.D865D 0.23 TCGA-CG-5723-01 20 62701593 62701593 G T TCEA2 Intron 0.22 TCGA-CG-5723-01 20 629410 629410 G A SRXN1 Missense_Mutation p.T121I 0.23 deleterious(0) probably_damaging(0.982) TCGA-CG-5723-01 20 6759236 6759236 G T BMP2 Missense_Mutation p.A231S 0.15 tolerated(0.34) benign(0.038) TCGA-CG-5723-01 20 8862510 8862510 G A PLCB1 3'UTR 0.30 TCGA-CG-5723-01 20 9520201 9520201 T C PAK7 Missense_Mutation p.T690A 0.23 deleterious(0.04) probably_damaging(0.96) TCGA-CG-5723-01 21 11098732 11098732 C T BAGE2 RNA 0.12 TCGA-CG-5723-01 21 27425591 27425591 A C APP Silent p.V143V 0.17 TCGA-CG-5723-01 21 28305340 28305340 T C ADAMTS5 Silent p.G571G 0.12 TCGA-CG-5723-01 21 30324485 30324485 T C LTN1 Missense_Mutation p.E1160G 0.22 deleterious(0) benign(0.283) TCGA-CG-5723-01 21 30909515 30909515 A G GRIK1 3'UTR 0.27 TCGA-CG-5723-01 21 31654349 31654349 T C KRTAP24-1 3'UTR 0.20 TCGA-CG-5723-01 21 31874344 31874344 C T KRTAP19-5 Missense_Mutation p.G22D 0.19 tolerated_low_confidence(0.31) unknown(0) TCGA-CG-5723-01 21 32513434 32513434 A G TIAM1 Splice_Site p.X1258_splice 0.22 TCGA-CG-5723-01 21 32582396 32582396 C T TIAM1 Missense_Mutation p.D785N 0.22 tolerated(0.07) possibly_damaging(0.711) TCGA-CG-5723-01 21 33044413 33044413 A C SCAF4 Missense_Mutation p.F915V 0.12 unknown(0) TCGA-CG-5723-01 21 33340661 33340661 C T HUNK Missense_Mutation p.T325M 0.22 tolerated(0.17) benign(0.018) TCGA-CG-5723-01 21 34971554 34971554 G A CRYZL1 Missense_Mutation p.A193V 0.20 deleterious(0.05) benign(0.12) TCGA-CG-5723-01 21 36252918 36252918 G A RUNX1 Silent p.T148T 0.26 TCGA-CG-5723-01 21 37605286 37605286 T - DOPEY2 Frame_Shift_Del p.F847Lfs*7 0.24 TCGA-CG-5723-01 21 37747623 37747623 G A MORC3 3'UTR 0.10 TCGA-CG-5723-01 21 37788576 37788576 C T CHAF1B Missense_Mutation p.T531M 0.17 tolerated_low_confidence(0.13) benign(0.001) TCGA-CG-5723-01 21 39671314 39671314 A G KCNJ15 Missense_Mutation p.D44G 0.23 tolerated(0.15) possibly_damaging(0.735) TCGA-CG-5723-01 21 40194777 40194777 C T ETS2 Silent p.H458H 0.20 TCGA-CG-5723-01 21 41151166 41151166 T C IGSF5 Missense_Mutation p.C290R 0.18 tolerated(0.87) benign(0) TCGA-CG-5723-01 21 41416171 41416171 C T DSCAM Silent p.G1739G 0.19 TCGA-CG-5723-01 21 42647470 42647470 G A BACE2 Silent p.L492L 0.28 TCGA-CG-5723-01 21 42866364 42866364 C T TMPRSS2 Missense_Mutation p.A90T 0.25 tolerated(0.72) benign(0.002) TCGA-CG-5723-01 21 43864692 43864692 C - UBASH3A Frame_Shift_Del p.T596Sfs*19 0.22 TCGA-CG-5723-01 21 45107917 45107917 C T RRP1B Silent p.P554P 0.22 TCGA-CG-5723-01 21 45504083 45504083 C - TRAPPC10 Frame_Shift_Del p.I775Lfs*41 0.25 TCGA-CG-5723-01 21 45540348 45540348 C T PWP2 Silent p.D436D 0.17 TCGA-CG-5723-01 21 45711065 45711065 C A AIRE Missense_Mutation p.L323M 0.26 deleterious(0) probably_damaging(0.999) TCGA-CG-5723-01 21 45999955 45999955 G - KRTAP10-5 Frame_Shift_Del p.C168Afs*201 0.29 TCGA-CG-5723-01 21 46047185 46047185 G A KRTAP10-9 Missense_Mutation p.A33T 0.31 tolerated(0.24) unknown(0) TCGA-CG-5723-01 21 46057386 46057386 C T KRTAP10-10 Missense_Mutation p.R18W 0.18 deleterious(0.01) benign(0.01) TCGA-CG-5723-01 21 46888199 46888199 C - COL18A1 Frame_Shift_Del p.P232Rfs*72 0.38 TCGA-CG-5723-01 21 46900038 46900038 C - COL18A1 Frame_Shift_Del p.P637Qfs*10 0.12 TCGA-CG-5723-01 21 47423577 47423577 G A COL6A1 Missense_Mutation p.A913T 0.16 deleterious(0.01) probably_damaging(0.949) TCGA-CG-5723-01 21 47697478 47697478 G A MCM3AP Silent p.Y607Y 0.25 TCGA-CG-5723-01 21 47754333 47754334 AG - PCNT Frame_Shift_Del p.E99Gfs*12 0.24 TCGA-CG-5723-01 22 17688177 17688177 G A CECR1 Missense_Mutation p.A109V 0.24 deleterious(0.02) possibly_damaging(0.774) TCGA-CG-5723-01 22 17690434 17690434 C T CECR1 Missense_Mutation p.R45Q 0.26 tolerated(0.65) benign(0.006) TCGA-CG-5723-01 22 18975310 18975310 A G DGCR5 RNA 0.26 TCGA-CG-5723-01 22 19709399 19709399 C T SEPT5 Missense_Mutation p.T290M 0.20 deleterious(0.01) probably_damaging(0.957) TCGA-CG-5723-01 22 19956143 19956143 C T COMT Missense_Mutation p.R234C 0.24 deleterious(0) probably_damaging(0.998) TCGA-CG-5723-01 22 21082088 21082088 C T PI4KA Missense_Mutation p.V1583I 0.19 deleterious(0) probably_damaging(0.993) TCGA-CG-5723-01 22 21343941 21343941 C T LZTR1 Silent p.L207L 0.17 TCGA-CG-5723-01 22 23653915 23653915 C T BCR Missense_Mutation p.R1072C 0.13 deleterious(0.02) possibly_damaging(0.898) TCGA-CG-5723-01 22 24086165 24086165 C T ZNF70 Missense_Mutation p.G388D 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-CG-5723-01 22 24964007 24964007 T C SNRPD3 Missense_Mutation p.V61A 0.22 deleterious(0.02) possibly_damaging(0.461) TCGA-CG-5723-01 22 26173682 26173682 A G MYO18B Missense_Mutation p.T668A 0.15 tolerated(0.13) benign(0.007) TCGA-CG-5723-01 22 26423370 26423370 C T MYO18B Missense_Mutation p.T2477M 0.23 tolerated(0.13) benign(0.018) TCGA-CG-5723-01 22 26747187 26747187 G A SEZ6L Silent p.T859T 0.23 TCGA-CG-5723-01 22 30413941 30413941 G A MTMR3 Missense_Mutation p.R567H 0.24 deleterious(0) probably_damaging(0.999) TCGA-CG-5723-01 22 30691728 30691728 G A TBC1D10A Silent p.H181H 0.24 TCGA-CG-5723-01 22 30951416 30951416 G A GAL3ST1 Silent p.L266L 0.15 TCGA-CG-5723-01 22 31524009 31524009 C T INPP5J Silent p.I252I 0.32 TCGA-CG-5723-01 22 31534345 31534345 G A PLA2G3 Silent p.G233G 0.27 TCGA-CG-5723-01 22 32017120 32017120 A G PISD Missense_Mutation p.C202R 0.28 tolerated(0.52) benign(0.002) TCGA-CG-5723-01 22 32108311 32108311 T - PRR14L Frame_Shift_Del p.K1838Nfs*16 0.18 TCGA-CG-5723-01 22 32200207 32200207 A G DEPDC5 Missense_Mutation p.K381E 0.20 deleterious(0) possibly_damaging(0.812) TCGA-CG-5723-01 22 32302427 32302427 C T DEPDC5 Missense_Mutation p.R1577W 0.16 deleterious(0) probably_damaging(0.999) TCGA-CG-5723-01 22 35783055 35783055 T A HMOX1 Missense_Mutation p.S174R 0.17 deleterious(0) probably_damaging(0.947) TCGA-CG-5723-01 22 36541536 36541536 G A APOL3 Missense_Mutation p.A112V 0.27 tolerated(0.24) benign(0) TCGA-CG-5723-01 22 37334294 37334294 T A CSF2RB Missense_Mutation p.V815D 0.25 deleterious(0) probably_damaging(0.986) TCGA-CG-5723-01 22 37709622 37709622 C G CYTH4 3'UTR 0.26 TCGA-CG-5723-01 22 38823826 38823826 G A KCNJ4 Silent p.G104G 0.29 TCGA-CG-5723-01 22 40066157 40066157 T C CACNA1I Missense_Mutation p.C1437R 0.24 deleterious(0) benign(0.384) TCGA-CG-5723-01 22 40066850 40066850 G A CACNA1I Missense_Mutation p.R1477Q 0.22 deleterious(0) benign(0.004) TCGA-CG-5723-01 22 40417465 40417465 T G FAM83F Silent p.T317T 0.20 TCGA-CG-5723-01 22 40661673 40661673 C T TNRC6B Missense_Mutation p.T480M 0.33 deleterious(0.03) benign(0.019) TCGA-CG-5723-01 22 40815358 40815358 G A MKL1 Nonsense_Mutation p.R362* 0.11 TCGA-CG-5723-01 22 41322429 41322429 A G XPNPEP3 Missense_Mutation p.Q505R 0.16 tolerated(1) benign(0) TCGA-CG-5723-01 22 41650427 41650429 TCC - RANGAP1 In_Frame_Del p.E382del 0.15 TCGA-CG-5723-01 22 41716681 41716681 G A ZC3H7B Missense_Mutation p.R6Q 0.16 deleterious(0) probably_damaging(1) TCGA-CG-5723-01 22 42475806 42475806 G T SMDT1 Missense_Mutation p.A12S 0.23 tolerated(0.28) benign(0.058) TCGA-CG-5723-01 22 42564716 42564717 GG - TCF20 Frame_Shift_Del p.P1942Lfs*40 0.27 TCGA-CG-5723-01 22 43218401 43218401 T - ARFGAP3 Frame_Shift_Del p.G230Efs*26 0.21 TCGA-CG-5723-01 22 44234807 44234807 G A SULT4A1 Missense_Mutation p.R150W 0.18 deleterious(0) probably_damaging(0.964) TCGA-CG-5723-01 22 45210627 45210627 G A ARHGAP8 Silent p.K247K 0.20 TCGA-CG-5723-01 22 45309814 45309814 G A PHF21B Missense_Mutation p.T240M 0.13 deleterious(0) possibly_damaging(0.694) TCGA-CG-5723-01 22 45818285 45818285 C T RIBC2 Silent p.S219S 0.23 TCGA-CG-5723-01 22 46688787 46688787 C A TTC38 3'UTR 0.21 TCGA-CG-5723-01 22 46765660 46765660 C T CELSR1 Missense_Mutation p.D2601N 0.08 deleterious(0.01) probably_damaging(1) TCGA-CG-5723-01 22 47188444 47188444 C - TBC1D22A Frame_Shift_Del p.F33Lfs*21 0.25 TCGA-CG-5723-01 22 50279276 50279276 A - ZBED4 Frame_Shift_Del p.I658Sfs*5 0.23 TCGA-CG-5723-01 22 50615711 50615711 C T PANX2 Silent p.R190R 0.36 TCGA-CG-5723-01 22 50961502 50961502 C - NCAPH2 Frame_Shift_Del p.Q531Sfs*38 0.35 TCGA-CG-5723-01 2 10140825 10140825 C T GRHL1 Missense_Mutation p.T616M 0.27 tolerated(0.15) probably_damaging(0.999) TCGA-CG-5723-01 2 101910512 101910512 G A RNF149 Silent p.G248G 0.18 TCGA-CG-5723-01 2 106013112 106013113 - A FHL2 5'UTR 0.24 TCGA-CG-5723-01 2 106497880 106497880 G A NCK2 Missense_Mutation p.R108H 0.16 tolerated(0.05) probably_damaging(0.996) TCGA-CG-5723-01 2 10908887 10908887 G A ATP6V1C2 Missense_Mutation p.A141T 0.06 tolerated(0.1) benign(0.079) TCGA-CG-5723-01 2 109964227 109964227 G A SH3RF3 Missense_Mutation p.R224Q 0.29 deleterious(0.04) possibly_damaging(0.627) TCGA-CG-5723-01 2 110303401 110303401 A G SEPT10 Intron 0.30 TCGA-CG-5723-01 2 11053802 11053802 G A KCNF1 Missense_Mutation p.R417H 0.27 tolerated(0.07) possibly_damaging(0.649) TCGA-CG-5723-01 2 112608477 112608477 A G ANAPC1 Missense_Mutation p.V509A 0.11 deleterious(0) benign(0.111) TCGA-CG-5723-01 2 113060881 113060881 A - ZC3H6 Frame_Shift_Del p.R99Efs*23 0.21 TCGA-CG-5723-01 2 113089479 113089479 C T ZC3H6 Missense_Mutation p.A995V 0.16 tolerated(0.3) benign(0.014) TCGA-CG-5723-01 2 113147712 113147712 T C RGPD8 Missense_Mutation p.E937G 0.22 deleterious(0.04) benign(0.013) TCGA-CG-5723-01 2 113174814 113174814 C T RGPD8 Silent p.T246T 0.17 TCGA-CG-5723-01 2 11332385 11332385 T - ROCK2 Frame_Shift_Del p.K1351Sfs*17 0.21 TCGA-CG-5723-01 2 113520087 113520087 T A CKAP2L Missense_Mutation p.N33Y 0.28 deleterious(0) probably_damaging(0.982) TCGA-CG-5723-01 2 11389837 11389837 A - ROCK2 Frame_Shift_Del p.W138Gfs*31 0.21 TCGA-CG-5723-01 2 11923961 11923961 G A LPIN1 Missense_Mutation p.R473Q 0.25 deleterious(0.02) probably_damaging(0.957) TCGA-CG-5723-01 2 121746587 121746587 G A GLI2 Missense_Mutation p.E1033K 0.25 deleterious(0) probably_damaging(0.981) TCGA-CG-5723-01 2 121997154 121997154 G A TFCP2L1 Silent p.N280N 0.18 TCGA-CG-5723-01 2 122286272 122286272 T C CLASP1 Missense_Mutation p.D120G 0.18 deleterious(0.01) benign(0.263) TCGA-CG-5723-01 2 128249666 128249666 T C IWS1 Splice_Site p.X644_splice 0.17 TCGA-CG-5723-01 2 128250886 128250886 G A IWS1 Missense_Mutation p.R634W 0.26 deleterious(0) probably_damaging(0.996) TCGA-CG-5723-01 2 128477655 128477655 C - WDR33 Frame_Shift_Del p.P649Hfs*69 0.33 TCGA-CG-5723-01 2 130832050 130832050 G A POTEF Silent p.L999L 0.23 TCGA-CG-5723-01 2 130832415 130832415 C T POTEF Missense_Mutation p.R877H 0.11 tolerated_low_confidence(0.11) probably_damaging(0.921) TCGA-CG-5723-01 2 132110744 132110744 G A AC073869.2 RNA 0.28 TCGA-CG-5723-01 2 132241708 132241708 G A MZT2A Missense_Mutation p.P135S 0.10 tolerated(0.08) probably_damaging(0.998) TCGA-CG-5723-01 2 132480119 132480119 G A C2orf27A 5'UTR 0.19 TCGA-CG-5723-01 2 133174929 133174929 C A GPR39 Missense_Mutation p.T105N 0.27 tolerated(1) benign(0.002) TCGA-CG-5723-01 2 133540971 133540971 T C NCKAP5 Missense_Mutation p.H1138R 0.20 tolerated(0.54) benign(0.013) TCGA-CG-5723-01 2 136610462 136610462 C - MCM6 Frame_Shift_Del p.R550Sfs*3 0.20 TCGA-CG-5723-01 2 141032034 141032034 C - LRP1B Frame_Shift_Del p.H4368Tfs*4 0.20 TCGA-CG-5723-01 2 143713778 143713778 T - KYNU Frame_Shift_Del p.F149Lfs*12 0.22 TCGA-CG-5723-01 2 149806952 149806952 A G KIF5C Missense_Mutation p.K315R 0.14 tolerated(0.14) benign(0.258) TCGA-CG-5723-01 2 152695721 152695721 T C CACNB4 Missense_Mutation p.Y492C 0.18 deleterious_low_confidence(0.03) possibly_damaging(0.789) TCGA-CG-5723-01 2 152737372 152737372 A G CACNB4 Missense_Mutation p.V111A 0.20 tolerated(0.28) probably_damaging(0.986) TCGA-CG-5723-01 2 15307394 15307394 C T NBAS Silent p.K2298K 0.06 TCGA-CG-5723-01 2 15432888 15432888 A G NBAS Silent p.A1600A 0.23 TCGA-CG-5723-01 2 155555962 155555962 C T KCNJ3 Silent p.S225S 0.20 TCGA-CG-5723-01 2 155711297 155711297 T - KCNJ3 Frame_Shift_Del p.P329Lfs*2 0.16 TCGA-CG-5723-01 2 160087129 160087129 C T TANC1 Missense_Mutation p.A1731V 0.15 tolerated_low_confidence(0.08) probably_damaging(0.999) TCGA-CG-5723-01 2 16082314 16082314 C - MYCN Frame_Shift_Del p.P45Rfs*86 0.21 TCGA-CG-5723-01 2 162274319 162274319 C T TBR1 Silent p.G275G 0.25 TCGA-CG-5723-01 2 1653400 1653400 C T PXDN Missense_Mutation p.A718T 0.25 deleterious(0) probably_damaging(0.91) TCGA-CG-5723-01 2 165578962 165578962 A - COBLL1 Frame_Shift_Del p.Q245Nfs*18 0.17 TCGA-CG-5723-01 2 169699563 169699563 A - NOSTRIN Frame_Shift_Del p.N191Tfs*9 0.28 TCGA-CG-5723-01 2 170044552 170044552 G A LRP2 Missense_Mutation p.R3086C 0.20 possibly_damaging(0.849) TCGA-CG-5723-01 2 170127462 170127462 A - LRP2 Frame_Shift_Del p.S758Qfs*7 0.16 TCGA-CG-5723-01 2 170460581 170460581 T - PPIG Frame_Shift_Del p.F12Lfs*115 0.23 TCGA-CG-5723-01 2 170806462 170806462 G A UBR3 Silent p.S1144S 0.16 TCGA-CG-5723-01 2 173686690 173686690 C T RAPGEF4 Intron 0.22 TCGA-CG-5723-01 2 175432803 175432803 T C WIPF1 Splice_Site p.X377_splice 0.13 TCGA-CG-5723-01 2 175622359 175622359 G A CHRNA1 Silent p.G118G 0.18 TCGA-CG-5723-01 2 175982979 175982979 T - ATF2 Frame_Shift_Del p.M107Cfs*3 0.22 TCGA-CG-5723-01 2 176987564 176987564 A G HOXD9 Missense_Mutation p.D23G 0.16 deleterious(0) probably_damaging(0.999) TCGA-CG-5723-01 2 17941286 17941286 A C GEN1 Missense_Mutation p.T26P 0.24 deleterious(0) probably_damaging(0.981) TCGA-CG-5723-01 2 179422756 179422756 T C TTN Missense_Mutation p.T29109A 0.25 TCGA-CG-5723-01 2 179424814 179424814 G - TTN Frame_Shift_Del p.P28682Rfs*2 0.17 TCGA-CG-5723-01 2 179474066 179474066 A G TTN Missense_Mutation p.I17324T 0.15 TCGA-CG-5723-01 2 179474465 179474465 C A TTN Missense_Mutation p.G17229C 0.28 TCGA-CG-5723-01 2 179484758 179484758 G A TTN Silent p.C15462C 0.24 TCGA-CG-5723-01 2 179498235 179498235 C T TTN Missense_Mutation p.R14284H 0.28 TCGA-CG-5723-01 2 17961961 17961961 A C GEN1 Missense_Mutation p.K494N 0.25 tolerated(0.07) benign(0.038) TCGA-CG-5723-01 2 179640257 179640257 A G TTN Missense_Mutation p.Y2112H 0.18 TCGA-CG-5723-01 2 180309623 180309623 G A ZNF385B Missense_Mutation p.R393W 0.25 deleterious(0) probably_damaging(0.999) TCGA-CG-5723-01 2 188348879 188348879 C T TFPI Silent p.P200P 0.23 TCGA-CG-5723-01 2 189907474 189907474 G T COL5A2 Missense_Mutation p.A1166D 0.20 unknown(0) TCGA-CG-5723-01 2 190617701 190617701 G A OSGEPL1 Missense_Mutation p.A323V 0.18 tolerated(1) benign(0.001) TCGA-CG-5723-01 2 191898219 191898219 T A STAT4 Missense_Mutation p.S617C 0.24 deleterious(0) benign(0.306) TCGA-CG-5723-01 2 192228478 192228478 A G MYO1B Missense_Mutation p.M264V 0.19 tolerated(0.09) benign(0.063) TCGA-CG-5723-01 2 193049142 193049142 C T TMEFF2 Missense_Mutation p.R117Q 0.28 deleterious(0.01) possibly_damaging(0.704) TCGA-CG-5723-01 2 196605585 196605585 T C DNAH7 Missense_Mutation p.I3925V 0.21 tolerated(0.6) benign(0.055) TCGA-CG-5723-01 2 200173523 200173523 C T SATB2 Missense_Mutation p.R567H 0.24 deleterious(0.02) benign(0.039) TCGA-CG-5723-01 2 200813094 200813094 A G TYW5 Silent p.I60I 0.12 TCGA-CG-5723-01 2 202070608 202070608 A C CASP10 Missense_Mutation p.N242T 0.25 tolerated(0.53) benign(0.012) TCGA-CG-5723-01 2 202141612 202141612 T A CASP8 Missense_Mutation p.N300K 0.04 deleterious(0.01) possibly_damaging(0.905) TCGA-CG-5723-01 2 203384859 203384859 C - BMPR2 Frame_Shift_Del p.S301Ffs*34 0.13 TCGA-CG-5723-01 2 20451242 20451242 A - PUM2 3'UTR 0.25 TCGA-CG-5723-01 2 20451293 20451293 A - PUM2 3'UTR 0.21 TCGA-CG-5723-01 2 206166298 206166298 A - PARD3B Frame_Shift_Del p.T775Rfs*13 0.15 TCGA-CG-5723-01 2 206587232 206587232 G A NRP2 Missense_Mutation p.S155N 0.20 tolerated(0.09) benign(0.004) TCGA-CG-5723-01 2 206874404 206874404 G A INO80D Missense_Mutation p.R553C 0.23 deleterious(0) probably_damaging(0.972) TCGA-CG-5723-01 2 206884472 206884472 G A INO80D Missense_Mutation p.H466Y 0.16 deleterious(0.02) possibly_damaging(0.594) TCGA-CG-5723-01 2 207636937 207636937 A T FASTKD2 Missense_Mutation p.I383F 0.27 deleterious(0.05) benign(0.01) TCGA-CG-5723-01 2 208988911 208988911 G A CRYGD Silent p.R59R 0.21 TCGA-CG-5723-01 2 21233212 21233212 T C APOB Silent p.T2176T 0.26 TCGA-CG-5723-01 2 21235467 21235467 A G APOB Missense_Mutation p.S1425P 0.18 possibly_damaging(0.522) TCGA-CG-5723-01 2 216274341 216274341 C T FN1 Silent p.S748S 0.33 TCGA-CG-5723-01 2 216809644 216809644 A G MREG Missense_Mutation p.V196A 0.21 tolerated_low_confidence(0.22) benign(0.005) TCGA-CG-5723-01 2 217366124 217366124 G A RPL37A Silent p.Q92Q 0.26 TCGA-CG-5723-01 2 219131233 219131233 C T AAMP Silent p.P204P 0.32 TCGA-CG-5723-01 2 219536763 219536763 T G RNF25 5'UTR 0.19 TCGA-CG-5723-01 2 219846723 219846723 A G FEV Missense_Mutation p.F128S 0.24 deleterious(0) probably_damaging(1) TCGA-CG-5723-01 2 220085516 220085516 C T ATG9A Missense_Mutation p.V823M 0.27 deleterious_low_confidence(0) possibly_damaging(0.654) TCGA-CG-5723-01 2 220342646 220342646 C T SPEG Missense_Mutation p.R1616W 0.23 probably_damaging(0.995) TCGA-CG-5723-01 2 220402406 220402406 G A ASIC4 Missense_Mutation p.R593Q 0.20 deleterious(0.04) benign(0.029) TCGA-CG-5723-01 2 220418400 220418400 C A OBSL1 Missense_Mutation p.V1629L 0.12 tolerated(0.12) benign(0.174) TCGA-CG-5723-01 2 224746715 224746715 G A WDFY1 Silent p.G336G 0.22 TCGA-CG-5723-01 2 225666646 225666646 G A DOCK10 Silent p.D1460D 0.20 TCGA-CG-5723-01 2 227663330 227663330 G A IRS1 Missense_Mutation p.A42V 0.23 deleterious(0) possibly_damaging(0.771) TCGA-CG-5723-01 2 231973769 231973769 C T HTR2B Missense_Mutation p.R303Q 0.22 tolerated(0.07) benign(0.221) TCGA-CG-5723-01 2 232576065 232576067 AGG - PTMA In_Frame_Del p.E19del 0.26 TCGA-CG-5723-01 2 233834974 233834974 C T NGEF Missense_Mutation p.M111I 0.23 tolerated_low_confidence(0.48) benign(0.002) TCGA-CG-5723-01 2 234602124 234602124 C T UGT1A6 Silent p.I158I 0.21 TCGA-CG-5723-01 2 234858731 234858731 T - TRPM8 Frame_Shift_Del p.L362Yfs*30 0.19 TCGA-CG-5723-01 2 237490250 237490250 G T ACKR3 3'UTR 0.21 TCGA-CG-5723-01 2 238728937 238728937 G A RBM44 Missense_Mutation p.R620H 0.14 tolerated(1) benign(0.003) TCGA-CG-5723-01 2 239038938 239038938 G A ESPNL Missense_Mutation p.S528N 0.27 tolerated(0.24) benign(0.013) TCGA-CG-5723-01 2 242433634 242433634 C T FARP2 3'UTR 0.23 TCGA-CG-5723-01 2 24307245 24307245 G A TP53I3 5'UTR 0.29 TCGA-CG-5723-01 2 26693574 26693574 C T OTOF Missense_Mutation p.E1304K 0.25 tolerated(1) benign(0.002) TCGA-CG-5723-01 2 26696092 26696092 C T OTOF Missense_Mutation p.R1214H 0.20 deleterious(0) probably_damaging(1) TCGA-CG-5723-01 2 27278901 27278901 C - AGBL5 Frame_Shift_Del p.E424Rfs*44 0.28 TCGA-CG-5723-01 2 27481120 27481120 C A SLC30A3 Silent p.A111A 0.20 TCGA-CG-5723-01 2 27602968 27602971 TCTC - ZNF513 Frame_Shift_Del p.R67Tfs*17 0.35 TCGA-CG-5723-01 2 27851977 27851977 C T GPN1 Missense_Mutation p.H32Y 0.14 deleterious(0.01) benign(0.006) TCGA-CG-5723-01 2 28627079 28627079 A G FOSL2 Missense_Mutation p.T70A 0.22 deleterious(0.01) benign(0.219) TCGA-CG-5723-01 2 29083987 29083987 G A TRMT61B Silent p.D330D 0.22 TCGA-CG-5723-01 2 29416400 29416400 T - ALK Frame_Shift_Del p.K1518Rfs*5 0.22 TCGA-CG-5723-01 2 30987098 30987098 A G CAPN13 Missense_Mutation p.I200T 0.20 tolerated(0.07) benign(0.216) TCGA-CG-5723-01 2 32530841 32530841 T - YIPF4 3'UTR 0.43 TCGA-CG-5723-01 2 3481504 3481504 C T TRAPPC12 Silent p.D605D 0.26 TCGA-CG-5723-01 2 36704126 36704126 C T CRIM1 Silent p.G362G 0.25 TCGA-CG-5723-01 2 37035710 37035710 C T VIT Silent p.D495D 0.22 TCGA-CG-5723-01 2 37376193 37376193 A - EIF2AK2 Intron 0.14 TCGA-CG-5723-01 2 39964026 39964026 G A THUMPD2 Missense_Mutation p.A454V 0.20 tolerated(1) benign(0) TCGA-CG-5723-01 2 43625164 43625164 G - THADA Frame_Shift_Del p.S1392Afs*41 0.23 TCGA-CG-5723-01 2 44099366 44099366 G A ABCG8 Missense_Mutation p.V378M 0.21 tolerated(0.21) benign(0.004) TCGA-CG-5723-01 2 44428501 44428501 T - PPM1B Frame_Shift_Del p.F56Lfs*21 0.25 TCGA-CG-5723-01 2 44459529 44459529 A G PPM1B 3'Flank 0.16 TCGA-CG-5723-01 2 45169972 45169972 C T SIX3 Silent p.T243T 0.29 TCGA-CG-5723-01 2 45879393 45879393 G A PRKCE Missense_Mutation p.G52S 0.15 tolerated(0.09) possibly_damaging(0.611) TCGA-CG-5723-01 2 48808788 48808788 G A STON1-GTF2A1L Missense_Mutation p.S339N 0.24 tolerated(0.39) probably_damaging(0.993) TCGA-CG-5723-01 2 49190059 49190059 C T FSHR Missense_Mutation p.R634H 0.21 deleterious(0) possibly_damaging(0.881) TCGA-CG-5723-01 2 51255151 51255151 G A NRXN1 Silent p.G87G 0.36 TCGA-CG-5723-01 2 54119956 54119956 T A PSME4 Missense_Mutation p.T1394S 0.24 tolerated(0.81) benign(0.002) TCGA-CG-5723-01 2 54570910 54570910 C T C2orf73 Silent p.Y96Y 0.22 TCGA-CG-5723-01 2 55870530 55870530 G A PNPT1 Missense_Mutation p.T646M 0.22 tolerated(0.06) benign(0.148) TCGA-CG-5723-01 2 60689254 60689254 G - BCL11A Frame_Shift_Del p.L265Cfs*15 0.35 TCGA-CG-5723-01 2 61188656 61188656 T C PUS10 Silent p.P272P 0.18 TCGA-CG-5723-01 2 63176136 63176136 A - EHBP1 Frame_Shift_Del p.T756Qfs*17 0.22 TCGA-CG-5723-01 2 63664576 63664576 T - WDPCP Frame_Shift_Del p.K204Nfs*18 0.20 TCGA-CG-5723-01 2 64111196 64111196 C T UGP2 Missense_Mutation p.R182C 0.18 deleterious(0.01) possibly_damaging(0.876) TCGA-CG-5723-01 2 65298797 65298797 C T CEP68 Silent p.S189S 0.28 TCGA-CG-5723-01 2 65541135 65541135 G A SPRED2 Missense_Mutation p.R253C 0.23 tolerated(0.07) possibly_damaging(0.719) TCGA-CG-5723-01 2 70900460 70900460 T C ADD2 Intron 0.17 TCGA-CG-5723-01 2 71043195 71043195 G A CLEC4F Nonsense_Mutation p.Q440* 0.23 TCGA-CG-5723-01 2 71060135 71060136 - C CD207 Frame_Shift_Ins p.N205Efs*14 0.19 TCGA-CG-5723-01 2 73676827 73676827 T C ALMS1 Missense_Mutation p.V1057A 0.24 benign(0.146) TCGA-CG-5723-01 2 73680921 73680921 A C ALMS1 Missense_Mutation p.N2422H 0.21 benign(0.023) TCGA-CG-5723-01 2 74042785 74042785 G A C2orf78 Missense_Mutation p.A479T 0.29 tolerated(0.36) benign(0.022) TCGA-CG-5723-01 2 74596483 74596483 C T DCTN1 Missense_Mutation p.V510I 0.24 tolerated(0.28) benign(0.311) TCGA-CG-5723-01 2 74690083 74690084 TT - MOGS Frame_Shift_Del p.K278Efs*5 0.17 TCGA-CG-5723-01 2 80085186 80085186 T A CTNNA2 Missense_Mutation p.S116T 0.18 tolerated(0.06) benign(0.017) TCGA-CG-5723-01 2 80085188 80085188 G A CTNNA2 Silent p.S116S 0.30 TCGA-CG-5723-01 2 80530111 80530111 G T LRRTM1 Silent p.T278T 0.20 TCGA-CG-5723-01 2 85051153 85051153 G A TRABD2A Missense_Mutation p.R371W 0.30 deleterious(0.02) possibly_damaging(0.606) TCGA-CG-5723-01 2 85598687 85598687 T C ELMOD3 Splice_Site p.X203_splice 0.18 TCGA-CG-5723-01 2 85893744 85893744 T C SFTPB Missense_Mutation p.Q142R 0.17 deleterious(0.04) benign(0.111) TCGA-CG-5723-01 2 86437712 86437712 C T MRPL35 Missense_Mutation p.T163M 0.28 deleterious(0) probably_damaging(0.991) TCGA-CG-5723-01 2 87012862 87012862 T C CD8A 3'UTR 0.19 TCGA-CG-5723-01 2 89976186 89976187 - G IGKV2D-30 Frame_Shift_Ins p.D21Gfs*26 0.15 TCGA-CG-5723-01 2 96040058 96040058 G A KCNIP3 Missense_Mutation p.E66K 0.16 deleterious(0.03) benign(0.441) TCGA-CG-5723-01 2 9628371 9628371 C A IAH1 Silent p.V220V 0.25 TCGA-CG-5723-01 2 96919660 96919660 T G TMEM127 Silent p.T201T 0.27 TCGA-CG-5723-01 2 96943411 96943411 T C SNRNP200 Missense_Mutation p.N1933D 0.22 tolerated(0.14) possibly_damaging(0.738) TCGA-CG-5723-01 2 97008988 97008988 G - NCAPH Frame_Shift_Del p.L183Wfs*11 0.22 TCGA-CG-5723-01 2 97463265 97463265 G A CNNM4 Missense_Mutation p.R521Q 0.32 deleterious(0.02) benign(0.1) TCGA-CG-5723-01 2 98350977 98350977 G A ZAP70 Intron 0.21 TCGA-CG-5723-01 3 100469446 100469446 T C ABI3BP Missense_Mutation p.R1041G 0.26 deleterious(0) possibly_damaging(0.879) TCGA-CG-5723-01 3 100992437 100992439 TTC - IMPG2 In_Frame_Del p.E272del 0.26 TCGA-CG-5723-01 3 101284698 101284698 G A TRMT10C Missense_Mutation p.R358H 0.28 tolerated(0.23) benign(0.243) TCGA-CG-5723-01 3 101535714 101535714 C T NXPE3 Missense_Mutation p.P333L 0.19 tolerated(0.09) benign(0.024) TCGA-CG-5723-01 3 10357003 10357004 - C SEC13 Splice_Site p.X55_splice 0.35 TCGA-CG-5723-01 3 10370385 10370385 C T ATP2B2 3'UTR 0.38 TCGA-CG-5723-01 3 108776228 108776228 C T MORC1 Missense_Mutation p.M379I 0.19 deleterious(0) possibly_damaging(0.851) TCGA-CG-5723-01 3 109049561 109049561 T C DPPA4 Silent p.T163T 0.16 TCGA-CG-5723-01 3 109050783 109050783 T C DPPA4 Missense_Mutation p.N92D 0.23 tolerated(0.07) benign(0.059) TCGA-CG-5723-01 3 111693410 111693410 G C PHLDB2 Nonstop_Mutation p.*1254Yext*1 0.28 TCGA-CG-5723-01 3 111923223 111923223 A - SLC9C1 Frame_Shift_Del p.S672Hfs*9 0.19 TCGA-CG-5723-01 3 11301400 11301400 T G HRH1 Missense_Mutation p.L226R 0.40 tolerated(0.26) benign(0.351) TCGA-CG-5723-01 3 113503111 113503111 A C ATP6V1A Missense_Mutation p.K84N 0.19 deleterious(0.03) benign(0.008) TCGA-CG-5723-01 3 113679587 113679587 T C ZDHHC23 3'UTR 0.03 TCGA-CG-5723-01 3 11382179 11382179 T C ATG7 Missense_Mutation p.V317A 0.12 tolerated(0.55) benign(0.049) TCGA-CG-5723-01 3 114057858 114057858 G A ZBTB20 Silent p.D740D 0.23 TCGA-CG-5723-01 3 114058003 114058003 G - ZBTB20 Frame_Shift_Del p.P692Lfs*43 0.19 TCGA-CG-5723-01 3 114070178 114070178 C T ZBTB20 Silent p.A249A 0.17 TCGA-CG-5723-01 3 119190219 119190219 A G POGLUT1 Silent p.V80V 0.25 TCGA-CG-5723-01 3 119198976 119198976 A G POGLUT1 Missense_Mutation p.T179A 0.20 tolerated(0.13) possibly_damaging(0.792) TCGA-CG-5723-01 3 119222428 119222428 G A TIMMDC1 Missense_Mutation p.R137H 0.16 deleterious(0) probably_damaging(1) TCGA-CG-5723-01 3 121158877 121158877 G A POLQ Missense_Mutation p.P2451S 0.19 deleterious(0.03) probably_damaging(1) TCGA-CG-5723-01 3 121980496 121980496 G A CASR Missense_Mutation p.R205H 0.27 deleterious(0.03) benign(0.018) TCGA-CG-5723-01 3 122864423 122864423 T G PDIA5 Missense_Mutation p.L322R 0.08 deleterious(0) probably_damaging(0.988) TCGA-CG-5723-01 3 123946846 123946846 G A KALRN Missense_Mutation p.R26Q 0.16 deleterious_low_confidence(0.01) benign(0.356) TCGA-CG-5723-01 3 125725501 125725501 T C SLC41A3 Intron 0.25 TCGA-CG-5723-01 3 12660191 12660191 C T RAF1 Silent p.T10T 0.22 TCGA-CG-5723-01 3 126746844 126746844 G A PLXNA1 Missense_Mutation p.G1475D 0.19 deleterious(0) probably_damaging(1) TCGA-CG-5723-01 3 127294786 127294788 GAA - TPRA1 In_Frame_Del p.F202del 0.20 TCGA-CG-5723-01 3 127327857 127327857 C T MCM2 Silent p.I473I 0.23 TCGA-CG-5723-01 3 128584202 128584202 G A RP11-723O4.9 5'Flank 0.24 TCGA-CG-5723-01 3 12977583 12977583 C T IQSEC1 Silent p.P325P 0.35 TCGA-CG-5723-01 3 130162359 130162359 C T COL6A5 Missense_Mutation p.A2176V 0.21 tolerated(0.27) benign(0.091) TCGA-CG-5723-01 3 130743595 130743595 T C ASTE1 Missense_Mutation p.I186V 0.22 tolerated(0.75) benign(0.002) TCGA-CG-5723-01 3 135720336 135720336 A G PPP2R3A 5'UTR 0.27 TCGA-CG-5723-01 3 1371501 1371501 A - CNTN6 Frame_Shift_Del p.K418Sfs*63 0.30 TCGA-CG-5723-01 3 137843629 137843629 T C A4GNT Missense_Mutation p.D167G 0.25 deleterious(0) probably_damaging(1) TCGA-CG-5723-01 3 138340266 138340266 A - FAIM Frame_Shift_Del p.M35* 0.25 TCGA-CG-5723-01 3 138739139 138739139 A G PRR23B Missense_Mutation p.L122P 0.19 tolerated(0.09) benign(0.193) TCGA-CG-5723-01 3 142840602 142840602 C T CHST2 Missense_Mutation p.A315V 0.45 tolerated(1) probably_damaging(0.995) TCGA-CG-5723-01 3 14564529 14564529 G A GRIP2 RNA 0.15 TCGA-CG-5723-01 3 14564548 14564548 C T GRIP2 RNA 0.40 TCGA-CG-5723-01 3 14769959 14769959 T C C3orf20 Silent p.I568I 0.17 TCGA-CG-5723-01 3 14863039 14863039 G A FGD5 Missense_Mutation p.V821M 0.23 deleterious(0) probably_damaging(0.999) TCGA-CG-5723-01 3 150460061 150460061 C T SIAH2 Missense_Mutation p.R281H 0.26 deleterious(0.04) benign(0.21) TCGA-CG-5723-01 3 150917219 150917219 C T GPR171 5'UTR 0.16 TCGA-CG-5723-01 3 151012131 151012131 G A GPR87 Silent p.F301F 0.18 TCGA-CG-5723-01 3 151095843 151095843 G A MED12L Missense_Mutation p.A1419T 0.18 deleterious(0) possibly_damaging(0.874) TCGA-CG-5723-01 3 158387236 158387236 G A LXN Missense_Mutation p.A119V 0.27 deleterious(0.02) benign(0.401) TCGA-CG-5723-01 3 16345145 16345145 T - OXNAD1 3'UTR 0.20 TCGA-CG-5723-01 3 16358486 16358486 A G RFTN1 Missense_Mutation p.V529A 0.09 tolerated_low_confidence(0.75) benign(0.004) TCGA-CG-5723-01 3 16419565 16419565 T C RFTN1 Missense_Mutation p.I162M 0.31 deleterious(0.05) benign(0.346) TCGA-CG-5723-01 3 164906625 164906625 A - SLITRK3 Frame_Shift_Del p.F665Sfs*128 0.35 TCGA-CG-5723-01 3 167000063 167000063 A G ZBBX Silent p.N739N 0.22 TCGA-CG-5723-01 3 169578504 169578504 G T LRRC31 Missense_Mutation p.P111H 0.04 deleterious(0) probably_damaging(0.993) TCGA-CG-5723-01 3 172163150 172163150 C T GHSR Missense_Mutation p.S301N 0.20 deleterious(0) possibly_damaging(0.516) TCGA-CG-5723-01 3 17255739 17255739 C T TBC1D5 Missense_Mutation p.R593H 0.34 deleterious(0.03) benign(0.052) TCGA-CG-5723-01 3 182947567 182947567 T A MCF2L2 Silent p.G644G 0.18 TCGA-CG-5723-01 3 182988259 182988259 C T B3GNT5 Missense_Mutation p.R225C 0.23 deleterious(0.01) probably_damaging(0.954) TCGA-CG-5723-01 3 184090982 184090982 G T THPO Intron 0.18 TCGA-CG-5723-01 3 190127782 190127782 G A CLDN16 Missense_Mutation p.R292H 0.27 deleterious(0) benign(0.104) TCGA-CG-5723-01 3 190158096 190158096 G A TMEM207 Nonsense_Mutation p.R81* 0.21 TCGA-CG-5723-01 3 194344358 194344358 G A TMEM44 Missense_Mutation p.P142L 0.29 tolerated(0.21) probably_damaging(0.969) TCGA-CG-5723-01 3 197273282 197273282 T C BDH1 Silent p.S11S 0.18 TCGA-CG-5723-01 3 25622169 25622169 G A RARB Missense_Mutation p.A248T 0.38 deleterious(0.05) probably_damaging(0.987) TCGA-CG-5723-01 3 31621466 31621466 G A STT3B Missense_Mutation p.A197T 0.19 deleterious(0.04) probably_damaging(1) TCGA-CG-5723-01 3 32932581 32932581 C T TRIM71 Missense_Mutation p.R629C 0.56 deleterious(0) probably_damaging(1) TCGA-CG-5723-01 3 37367422 37367422 T A GOLGA4 Missense_Mutation p.S1371T 0.49 possibly_damaging(0.702) TCGA-CG-5723-01 3 37523078 37523078 C T ITGA9 Missense_Mutation p.T175M 0.49 tolerated(0.05) benign(0.011) TCGA-CG-5723-01 3 38763811 38763811 C T SCN10A Missense_Mutation p.V1149M 0.49 deleterious(0) probably_damaging(1) TCGA-CG-5723-01 3 38892065 38892065 C A SCN11A Nonsense_Mutation p.E1412* 0.22 TCGA-CG-5723-01 3 38949543 38949543 T - SCN11A Frame_Shift_Del p.K457Rfs*15 0.34 TCGA-CG-5723-01 3 42794103 42794103 C T CCDC13 Silent p.K159K 0.47 TCGA-CG-5723-01 3 44828026 44828026 C T KIF15 Missense_Mutation p.A200V 0.47 tolerated(0.25) possibly_damaging(0.561) TCGA-CG-5723-01 3 46560368 46560368 T - LRRC2 3'UTR 0.45 TCGA-CG-5723-01 3 47890175 47890175 C T DHX30 Silent p.T879T 0.49 TCGA-CG-5723-01 3 4810193 4810193 A T ITPR1 Splice_Site p.X1894_splice 0.32 TCGA-CG-5723-01 3 48310845 48310845 C A ZNF589 3'UTR 0.53 TCGA-CG-5723-01 3 48310866 48310866 G T ZNF589 3'UTR 0.57 TCGA-CG-5723-01 3 48476334 48476334 G A CCDC51 Missense_Mutation p.H69Y 0.50 tolerated(0.07) benign(0.002) TCGA-CG-5723-01 3 48506346 48506346 G A ATRIP Silent p.V724V 0.37 TCGA-CG-5723-01 3 48602622 48602622 G - COL7A1 Frame_Shift_Del p.P2847Lfs*51 0.38 TCGA-CG-5723-01 3 48623373 48623373 C A COL7A1 Missense_Mutation p.K1253N 0.48 unknown(0) TCGA-CG-5723-01 3 48732686 48732686 G A IP6K2 Silent p.R13R 0.46 TCGA-CG-5723-01 3 49042326 49042326 T G P4HTM Missense_Mutation p.I307S 0.45 deleterious(0) benign(0.243) TCGA-CG-5723-01 3 49054740 49054740 A G DALRD3 Missense_Mutation p.V283A 0.46 deleterious(0) possibly_damaging(0.598) TCGA-CG-5723-01 3 49147938 49147938 A G USP19 Silent p.G1264G 0.14 TCGA-CG-5723-01 3 49149374 49149374 C T USP19 Missense_Mutation p.R956H 0.27 tolerated(0.11) probably_damaging(0.996) TCGA-CG-5723-01 3 49456495 49456495 G - AMT Frame_Shift_Del p.D262Efs*51 0.35 TCGA-CG-5723-01 3 52325906 52325906 G - GLYCTK Frame_Shift_Del p.L227Wfs*11 0.11 TCGA-CG-5723-01 3 52824813 52824813 C T ITIH1 Silent p.D790D 0.50 TCGA-CG-5723-01 3 53694205 53694205 C T CACNA1D Silent p.G223G 0.13 TCGA-CG-5723-01 3 54952711 54952711 G A LRTM1 Silent p.C271C 0.53 TCGA-CG-5723-01 3 58519212 58519212 G A ACOX2 Silent p.H181H 0.18 TCGA-CG-5723-01 3 62258734 62258734 G A PTPRG Missense_Mutation p.R1099H 0.17 deleterious(0) probably_damaging(0.993) TCGA-CG-5723-01 3 64004505 64004505 G T PSMD6 Missense_Mutation p.L236I 0.20 tolerated(0.05) probably_damaging(0.982) TCGA-CG-5723-01 3 69928397 69928397 C T MITF Missense_Mutation p.R73C 0.21 deleterious(0) probably_damaging(0.977) TCGA-CG-5723-01 3 71015109 71015109 G A FOXP1 Silent p.N609N 0.21 TCGA-CG-5723-01 3 73432878 73432878 C T PDZRN3 Missense_Mutation p.A947T 0.20 deleterious(0) probably_damaging(1) TCGA-CG-5723-01 3 74313501 74313501 T - CNTN3 3'UTR 0.22 TCGA-CG-5723-01 3 74474011 74474011 G A CNTN3 Missense_Mutation p.P147S 0.16 deleterious(0) probably_damaging(1) TCGA-CG-5723-01 3 89499405 89499405 G A EPHA3 Missense_Mutation p.D859N 0.19 deleterious(0.02) probably_damaging(0.996) TCGA-CG-5723-01 3 96706210 96706210 C T EPHA6 Missense_Mutation p.P163S 0.21 tolerated(0.05) probably_damaging(0.999) TCGA-CG-5723-01 3 9780731 9780731 C T BRPF1 Silent p.D216D 0.42 TCGA-CG-5723-01 3 98002130 98002130 A G OR5H2 Silent p.K133K 0.17 TCGA-CG-5723-01 4 101109133 101109133 G A DDIT4L Missense_Mutation p.L95F 0.13 deleterious(0.05) possibly_damaging(0.734) TCGA-CG-5723-01 4 103555971 103555971 C T MANBA Missense_Mutation p.V797M 0.21 tolerated(0.1) benign(0.028) TCGA-CG-5723-01 4 106157548 106157549 - C TET2 Frame_Shift_Ins p.Y819Lfs*2 0.19 TCGA-CG-5723-01 4 108969924 108969924 T C LEF1 Intron 0.16 TCGA-CG-5723-01 4 110451569 110451569 G T SEC24B Silent p.A1067A 0.26 TCGA-CG-5723-01 4 110605647 110605647 C A CCDC109B Missense_Mutation p.L221M 0.23 deleterious(0.04) benign(0.223) TCGA-CG-5723-01 4 110791250 110791250 A G LRIT3 Missense_Mutation p.K449E 0.20 tolerated(0.22) possibly_damaging(0.908) TCGA-CG-5723-01 4 113436263 113436263 G A NEUROG2 Silent p.N123N 0.20 TCGA-CG-5723-01 4 114823740 114823740 T C ARSJ Missense_Mutation p.N497S 0.28 deleterious(0) probably_damaging(0.999) TCGA-CG-5723-01 4 119948547 119948547 G A SYNPO2 Silent p.S341S 0.27 TCGA-CG-5723-01 4 119951141 119951141 C T SYNPO2 Missense_Mutation p.A404V 0.28 deleterious(0.03) probably_damaging(0.946) TCGA-CG-5723-01 4 121616101 121616101 T - PRDM5 3'UTR 0.31 TCGA-CG-5723-01 4 123663971 123663972 TA - BBS12 Frame_Shift_Del p.M309Vfs*2 0.23 TCGA-CG-5723-01 4 1244943 1244943 G A CTBP1 5'Flank 0.18 TCGA-CG-5723-01 4 125592090 125592090 C T ANKRD50 Missense_Mutation p.G781D 0.19 deleterious(0.01) possibly_damaging(0.903) TCGA-CG-5723-01 4 126372844 126372844 T C FAT4 Missense_Mutation p.F3558S 0.19 probably_damaging(0.973) TCGA-CG-5723-01 4 126389930 126389930 T G FAT4 Missense_Mutation p.S4055A 0.26 benign(0.012) TCGA-CG-5723-01 4 128651645 128651645 G A SLC25A31 5'UTR 0.17 TCGA-CG-5723-01 4 129783017 129783017 G - JADE1 Frame_Shift_Del p.A382Lfs*32 0.17 TCGA-CG-5723-01 4 1305821 1305821 C T MAEA Missense_Mutation p.R42W 0.30 deleterious(0) possibly_damaging(0.854) TCGA-CG-5723-01 4 134072704 134072704 T C PCDH10 Missense_Mutation p.V470A 0.17 tolerated(0.24) probably_damaging(0.997) TCGA-CG-5723-01 4 13601693 13601693 G A BOD1L1 Silent p.G2277G 0.26 TCGA-CG-5723-01 4 141264811 141264813 GAG - RP11-425I13.3 Intron 0.15 TCGA-CG-5723-01 4 141446595 141446595 T G ELMOD2 Missense_Mutation p.L5V 0.25 tolerated(0.78) benign(0.026) TCGA-CG-5723-01 4 141832231 141832231 T - RNF150 Intron 0.24 TCGA-CG-5723-01 4 143324116 143324116 T C INPP4B Missense_Mutation p.D116G 0.04 deleterious(0.03) benign(0.147) TCGA-CG-5723-01 4 145655985 145655985 C - HHIP Frame_Shift_Del p.T620Rfs*57 0.20 TCGA-CG-5723-01 4 147561385 147561385 G A POU4F2 Missense_Mutation p.A219T 0.36 tolerated(0.43) benign(0.053) TCGA-CG-5723-01 4 151511917 151511917 G A LRBA Silent p.G2058G 0.28 TCGA-CG-5723-01 4 151749498 151749498 A G LRBA Missense_Mutation p.S1669P 0.22 deleterious_low_confidence(0.05) benign(0.005) TCGA-CG-5723-01 4 152679951 152679951 A - PET112 Frame_Shift_Del p.F100Lfs*17 0.20 TCGA-CG-5723-01 4 153249385 153249385 G A FBXW7 Missense_Mutation p.R465C 0.18 deleterious(0) probably_damaging(1) TCGA-CG-5723-01 4 15437526 15437526 G A C1QTNF7 Silent p.G60G 0.28 TCGA-CG-5723-01 4 154709525 154709525 G - SFRP2 Frame_Shift_Del p.L155Sfs*31 0.25 TCGA-CG-5723-01 4 155163925 155163925 C T DCHS2 Splice_Site p.X1859_splice 0.17 TCGA-CG-5723-01 4 15601156 15601157 - A CC2D2A Frame_Shift_Ins p.I1503Nfs*19 0.22 TCGA-CG-5723-01 4 156750955 156750955 A G ASIC5 3'UTR 0.32 TCGA-CG-5723-01 4 156824926 156824926 T - TDO2 Frame_Shift_Del p.L7* 0.23 TCGA-CG-5723-01 4 158284167 158284167 G A GRIA2 Missense_Mutation p.V875I 0.23 deleterious_low_confidence(0.04) benign(0.113) TCGA-CG-5723-01 4 159782803 159782803 C T FNIP2 Missense_Mutation p.A447V 0.27 deleterious(0) probably_damaging(0.994) TCGA-CG-5723-01 4 164428219 164428219 A G TMA16 Missense_Mutation p.E13G 0.40 deleterious(0.04) possibly_damaging(0.627) TCGA-CG-5723-01 4 167921509 167921509 A C SPOCK3 Missense_Mutation p.L117R 0.04 deleterious(0) possibly_damaging(0.775) TCGA-CG-5723-01 4 170057551 170057551 G - SH3RF1 Frame_Shift_Del p.P329Lfs*31 0.20 TCGA-CG-5723-01 4 175580334 175580334 T G GLRA3 Missense_Mutation p.K314N 0.24 deleterious(0) probably_damaging(0.998) TCGA-CG-5723-01 4 17963635 17963635 A T LCORL Missense_Mutation p.D107E 0.24 tolerated(1) benign(0.046) TCGA-CG-5723-01 4 184577096 184577096 G A RWDD4 Missense_Mutation p.R15C 0.21 tolerated(0.08) probably_damaging(0.97) TCGA-CG-5723-01 4 184633808 184633808 C T TRAPPC11 3'UTR 0.25 TCGA-CG-5723-01 4 185689450 185689450 C A ACSL1 Intron 0.31 TCGA-CG-5723-01 4 188924074 188924074 C T ZFP42 Missense_Mutation p.A38V 0.21 tolerated(0.07) benign(0.032) TCGA-CG-5723-01 4 1980497 1980497 G A WHSC1 Missense_Mutation p.R1320Q 0.16 tolerated(0.55) benign(0.003) TCGA-CG-5723-01 4 22394224 22394224 T - GPR125 Frame_Shift_Del p.A858Lfs*22 0.24 TCGA-CG-5723-01 4 24572442 24572442 C T DHX15 Missense_Mutation p.R179Q 0.26 tolerated(0.66) benign(0.006) TCGA-CG-5723-01 4 24578185 24578185 G A DHX15 Missense_Mutation p.A63V 0.25 tolerated_low_confidence(0.26) benign(0.018) TCGA-CG-5723-01 4 25849480 25849480 C T SEL1L3 Missense_Mutation p.V57I 0.17 tolerated(0.16) benign(0.026) TCGA-CG-5723-01 4 26487494 26487494 T C CCKAR Missense_Mutation p.N131D 0.10 deleterious(0.01) possibly_damaging(0.852) TCGA-CG-5723-01 4 2900204 2900204 C T ADD1 Silent p.S310S 0.22 TCGA-CG-5723-01 4 30724650 30724650 G A PCDH7 Missense_Mutation p.G536S 0.30 tolerated(1) benign(0.004) TCGA-CG-5723-01 4 30725630 30725630 C T PCDH7 Silent p.T862T 0.23 TCGA-CG-5723-01 4 3237477 3237477 G - HTT Frame_Shift_Del p.G2920Afs*2 0.21 TCGA-CG-5723-01 4 3424203 3424203 C T RGS12 Missense_Mutation p.A980V 0.26 deleterious(0.04) benign(0.041) TCGA-CG-5723-01 4 38798148 38798148 A - TLR1 Frame_Shift_Del p.W769Gfs*4 0.30 TCGA-CG-5723-01 4 38830759 38830759 C T TLR6 Silent p.L112L 0.25 TCGA-CG-5723-01 4 44177000 44177000 C G KCTD8 Missense_Mutation p.S410T 0.20 tolerated(0.3) possibly_damaging(0.899) TCGA-CG-5723-01 4 47559796 47559796 A C ATP10D Missense_Mutation p.E647A 0.24 tolerated(0.38) benign(0.259) TCGA-CG-5723-01 4 47597575 47597576 - A CORIN 3'UTR 0.30 TCGA-CG-5723-01 4 48038331 48038331 T - NIPAL1 3'UTR 0.15 TCGA-CG-5723-01 4 5458560 5458560 G A STK32B Silent p.T231T 0.33 TCGA-CG-5723-01 4 55146618 55146618 T C PDGFRA Silent p.R764R 0.21 TCGA-CG-5723-01 4 5620258 5620258 G A EVC2 Nonsense_Mutation p.R885* 0.22 TCGA-CG-5723-01 4 5624349 5624349 C T EVC2 Missense_Mutation p.V806M 0.20 tolerated(0.06) probably_damaging(0.999) TCGA-CG-5723-01 4 5812121 5812121 G - EVC Frame_Shift_Del p.V948Cfs*22 0.22 TCGA-CG-5723-01 4 6610856 6610856 G A MAN2B2 Missense_Mutation p.V613M 0.17 tolerated(0.43) benign(0.014) TCGA-CG-5723-01 4 678571 678571 G - MFSD7 Frame_Shift_Del p.T221Pfs*38 0.22 TCGA-CG-5723-01 4 69095169 69095169 C T TMPRSS11B Missense_Mutation p.R251Q 0.18 tolerated(0.34) benign(0.013) TCGA-CG-5723-01 4 69433933 69433933 A - UGT2B17 Frame_Shift_Del p.F90Lfs*2 0.23 TCGA-CG-5723-01 4 69978468 69978468 T C UGT2B7 3'UTR 0.25 TCGA-CG-5723-01 4 71114945 71114945 T C CSN3 Silent p.T106T 0.21 TCGA-CG-5723-01 4 71201895 71201895 C T CABS1 Missense_Mutation p.T380M 0.23 tolerated(0.5) probably_damaging(0.98) TCGA-CG-5723-01 4 71672462 71672462 T A RUFY3 3'UTR 0.17 TCGA-CG-5723-01 4 76695833 76695833 T C USO1 Missense_Mutation p.V189A 0.14 deleterious(0) benign(0.356) TCGA-CG-5723-01 4 76793201 76793201 G A PPEF2 Silent p.T542T 0.19 TCGA-CG-5723-01 4 786350 786352 CTT - CPLX1 In_Frame_Del p.K26del 0.30 TCGA-CG-5723-01 4 8108356 8108356 G A ABLIM2 Missense_Mutation p.P7S 0.26 deleterious(0.02) possibly_damaging(0.844) TCGA-CG-5723-01 4 82377783 82377783 G A RASGEF1B Intron 0.26 TCGA-CG-5723-01 4 83785682 83785682 G A SEC31A Nonsense_Mutation p.Q423* 0.11 TCGA-CG-5723-01 4 83838784 83838784 G A THAP9 Silent p.L473L 0.25 TCGA-CG-5723-01 4 85617311 85617311 C T WDFY3 Missense_Mutation p.A2905T 0.22 tolerated(0.23) benign(0.169) TCGA-CG-5723-01 4 87696414 87696414 C T PTPN13 Nonsense_Mutation p.R1872* 0.28 TCGA-CG-5723-01 4 88584427 88584427 A C DMP1 Missense_Mutation p.K499N 0.25 deleterious(0) unknown(0) TCGA-CG-5723-01 4 887700 887700 G - GAK Frame_Shift_Del p.P280Rfs*19 0.21 TCGA-CG-5723-01 4 95173909 95173910 - A SMARCAD1 Frame_Shift_Ins p.N347Kfs*4 0.22 TCGA-CG-5723-01 4 95198191 95198191 C T SMARCAD1 Missense_Mutation p.L655F 0.22 deleterious(0) probably_damaging(0.999) TCGA-CG-5723-01 4 96035949 96035949 A C BMPR1B Silent p.L104L 0.03 TCGA-CG-5723-01 4 96761471 96761471 C T PDHA2 Missense_Mutation p.A57V 0.18 deleterious(0.01) benign(0.054) TCGA-CG-5723-01 5 100222206 100222206 C T ST8SIA4 Missense_Mutation p.R115H 0.20 benign(0.002) TCGA-CG-5723-01 5 101748695 101748695 T - SLCO6A1 Frame_Shift_Del p.K542Rfs*13 0.24 TCGA-CG-5723-01 5 102444277 102444277 G A GIN1 Silent p.F45F 0.21 TCGA-CG-5723-01 5 102895013 102895013 A - NUDT12 Frame_Shift_Del p.F121Lfs*20 0.20 TCGA-CG-5723-01 5 108380463 108380463 A G FER Missense_Mutation p.Q599R 0.17 tolerated(0.1) benign(0.01) TCGA-CG-5723-01 5 108672997 108672997 C A PJA2 Missense_Mutation p.A688S 0.26 deleterious(0.01) unknown(0) TCGA-CG-5723-01 5 112177864 112177864 A - APC Frame_Shift_Del p.V2194Ffs*5 0.17 TCGA-CG-5723-01 5 112328441 112328441 G A DCP2 Missense_Mutation p.A136T 0.17 tolerated(0.23) probably_damaging(0.967) TCGA-CG-5723-01 5 11346489 11346489 A T CTNND2 Missense_Mutation p.D541E 0.15 deleterious(0.04) possibly_damaging(0.72) TCGA-CG-5723-01 5 115361762 115361762 A - AQPEP Frame_Shift_Del p.N975Tfs*4 0.21 TCGA-CG-5723-01 5 115840539 115840539 A G SEMA6A Splice_Site p.X34_splice 0.21 TCGA-CG-5723-01 5 121780285 121780285 A G SNCAIP Missense_Mutation p.T484A 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-CG-5723-01 5 126769111 126769111 C T MEGF10 Missense_Mutation p.P584S 0.23 tolerated(1) benign(0.021) TCGA-CG-5723-01 5 128368986 128368986 T A SLC27A6 3'UTR 0.28 TCGA-CG-5723-01 5 129243787 129243787 T C CHSY3 Missense_Mutation p.F274L 0.25 tolerated(0.13) possibly_damaging(0.655) TCGA-CG-5723-01 5 130782332 130782332 T - RAPGEF6 Frame_Shift_Del p.R1097Gfs*23 0.22 TCGA-CG-5723-01 5 130840422 130840422 T C RAPGEF6 Missense_Mutation p.E384G 0.24 deleterious(0.01) probably_damaging(1) TCGA-CG-5723-01 5 133478536 133478538 AAG - TCF7 In_Frame_Del p.K294del 0.23 TCGA-CG-5723-01 5 133695646 133695646 C T CDKL3 Missense_Mutation p.R101Q 0.15 tolerated(0.12) probably_damaging(0.99) TCGA-CG-5723-01 5 133726150 133726150 A - UBE2B 3'UTR 0.24 TCGA-CG-5723-01 5 136834163 136834163 C T SPOCK1 Missense_Mutation p.G29R 0.50 tolerated(0.09) possibly_damaging(0.481) TCGA-CG-5723-01 5 137682483 137682483 C A FAM53C Silent p.P338P 0.24 TCGA-CG-5723-01 5 137756625 137756625 C - KDM3B Frame_Shift_Del p.P1317Rfs*10 0.21 TCGA-CG-5723-01 5 138253516 138253516 A - CTNNA1 Frame_Shift_Del p.K493Nfs*31 0.21 TCGA-CG-5723-01 5 138260955 138260955 T - CTNNA1 Frame_Shift_Del p.F587Lfs*5 0.21 TCGA-CG-5723-01 5 138643309 138643309 G A MATR3 Missense_Mutation p.A69T 0.28 tolerated(0.22) benign(0.026) TCGA-CG-5723-01 5 139235336 139235336 A G NRG2 Missense_Mutation p.V406A 0.17 deleterious(0) probably_damaging(0.999) TCGA-CG-5723-01 5 140167303 140167303 G A PCDHA1 Silent p.T476T 0.23 TCGA-CG-5723-01 5 140167617 140167617 T C PCDHA1 Missense_Mutation p.V581A 0.16 deleterious_low_confidence(0.03) possibly_damaging(0.757) TCGA-CG-5723-01 5 140175140 140175140 G A PCDHA2 Silent p.G197G 0.20 TCGA-CG-5723-01 5 140175673 140175673 C T PCDHA2 Missense_Mutation p.S375L 0.22 deleterious_low_confidence(0) benign(0.241) TCGA-CG-5723-01 5 140188759 140188759 G A PCDHA4 Missense_Mutation p.A663T 0.24 deleterious_low_confidence(0.01) benign(0.367) TCGA-CG-5723-01 5 140203164 140203164 T C PCDHA5 Missense_Mutation p.Y602H 0.25 deleterious_low_confidence(0) possibly_damaging(0.798) TCGA-CG-5723-01 5 140209139 140209139 C T PCDHA6 Missense_Mutation p.A488V 0.20 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-CG-5723-01 5 140229360 140229360 C T PCDHA9 Missense_Mutation p.A427V 0.23 tolerated_low_confidence(0.06) benign(0.19) TCGA-CG-5723-01 5 140250297 140250297 C A PCDHA11 Missense_Mutation p.R537S 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.714) TCGA-CG-5723-01 5 140263587 140263587 C T PCDHA13 Silent p.S578S 0.24 TCGA-CG-5723-01 5 140347691 140347691 C T PCDHAC2 Missense_Mutation p.P447L 0.27 deleterious(0) probably_damaging(0.999) TCGA-CG-5723-01 5 140531810 140531810 G A PCDHB6 Missense_Mutation p.V658M 0.18 deleterious_low_confidence(0.01) probably_damaging(0.92) TCGA-CG-5723-01 5 140532163 140532163 G T PCDHB6 Missense_Mutation p.Q775H 0.18 tolerated_low_confidence(0.2) benign(0.007) TCGA-CG-5723-01 5 140537437 140537437 C T PCDHB17 3'UTR 0.18 TCGA-CG-5723-01 5 140559277 140559277 C T PCDHB8 Silent p.D554D 0.16 TCGA-CG-5723-01 5 140563395 140563395 C A PCDHB16 Missense_Mutation p.L421I 0.23 tolerated_low_confidence(1) benign(0.001) TCGA-CG-5723-01 5 140712379 140712379 G A PCDHGA1 Missense_Mutation p.V710M 0.15 tolerated_low_confidence(0.07) benign(0.185) TCGA-CG-5723-01 5 140720690 140720690 C T PCDHGA2 Missense_Mutation p.R718C 0.26 deleterious_low_confidence(0.01) benign(0.066) TCGA-CG-5723-01 5 140725511 140725511 G A PCDHGA3 Silent p.A637A 0.18 TCGA-CG-5723-01 5 140739781 140739781 G A PCDHGB2 Missense_Mutation p.G27R 0.19 tolerated(0.64) benign(0.411) TCGA-CG-5723-01 5 140769353 140769353 C T PCDHGB4 Silent p.D634D 0.29 TCGA-CG-5723-01 5 140773871 140773871 G - PCDHGA8 Frame_Shift_Del p.A499Rfs*34 0.28 TCGA-CG-5723-01 5 140795052 140795052 T A PCDHGA10 Missense_Mutation p.S770R 0.19 deleterious_low_confidence(0) possibly_damaging(0.867) TCGA-CG-5723-01 5 140801469 140801469 C T PCDHGA11 Silent p.G225G 0.21 TCGA-CG-5723-01 5 141358224 141358224 T C RNF14 Silent p.S221S 0.24 TCGA-CG-5723-01 5 145439558 145439558 C - SH3RF2 Frame_Shift_Del p.S564Qfs*64 0.32 TCGA-CG-5723-01 5 145886723 145886723 A - TCERG1 Frame_Shift_Del p.K957Rfs*17 0.23 TCGA-CG-5723-01 5 146788339 146788339 T C DPYSL3 Silent p.E328E 0.24 TCGA-CG-5723-01 5 147582503 147582503 T C SPINK6 5'UTR 0.20 TCGA-CG-5723-01 5 148619446 148619446 G A ABLIM3 Missense_Mutation p.R400H 0.28 tolerated(0.06) benign(0.378) TCGA-CG-5723-01 5 148687114 148687114 C T AFAP1L1 Missense_Mutation p.R229W 0.18 deleterious(0) probably_damaging(0.999) TCGA-CG-5723-01 5 149433568 149433568 G A CSF1R 3'UTR 0.18 TCGA-CG-5723-01 5 149447811 149447811 C G CSF1R Silent p.L531L 0.17 TCGA-CG-5723-01 5 149677060 149677060 T C ARSI Missense_Mutation p.D476G 0.16 deleterious(0) probably_damaging(1) TCGA-CG-5723-01 5 149826384 149826384 G A RPS14 Missense_Mutation p.R98W 0.16 tolerated(0.06) benign(0.132) TCGA-CG-5723-01 5 149927860 149927860 G A NDST1 Silent p.S742S 0.19 TCGA-CG-5723-01 5 150310667 150310667 T G ZNF300P1 RNA 0.13 TCGA-CG-5723-01 5 150505975 150505975 C A ANXA6 Silent p.V348V 0.17 TCGA-CG-5723-01 5 150900904 150900904 C T FAT2 Silent p.T3750T 0.27 TCGA-CG-5723-01 5 153674465 153674465 C T GALNT10 Silent p.D83D 0.17 TCGA-CG-5723-01 5 159776084 159776084 C - C1QTNF2 3'UTR 0.31 TCGA-CG-5723-01 5 16474817 16474817 T - FAM134B 3'UTR 0.35 TCGA-CG-5723-01 5 16694613 16694613 C T MYO10 Missense_Mutation p.G1223R 0.23 deleterious(0) probably_damaging(1) TCGA-CG-5723-01 5 167915644 167915644 G A RARS Missense_Mutation p.R28Q 0.29 tolerated(0.58) benign(0.001) TCGA-CG-5723-01 5 167991059 167991059 C - PANK3 Frame_Shift_Del p.G216Vfs*10 0.27 TCGA-CG-5723-01 5 168093623 168093623 C A SLIT3 Missense_Mutation p.A1470S 0.26 tolerated(0.26) benign(0.15) TCGA-CG-5723-01 5 169496192 169496192 C A DOCK2 Missense_Mutation p.L1566M 0.17 deleterious(0) probably_damaging(0.952) TCGA-CG-5723-01 5 171765830 171765831 - G SH3PXD2B Frame_Shift_Ins p.R760Pfs*25 0.17 TCGA-CG-5723-01 5 171833291 171833291 G - SH3PXD2B Frame_Shift_Del p.L76Cfs*20 0.19 TCGA-CG-5723-01 5 175933771 175933771 A G FAF2 Silent p.V386V 0.21 TCGA-CG-5723-01 5 176003174 176003174 C T CDHR2 Silent p.Y394Y 0.23 TCGA-CG-5723-01 5 176517487 176517487 G A FGFR4 Missense_Mutation p.G63D 0.14 tolerated(0.47) benign(0.221) TCGA-CG-5723-01 5 176734722 176734722 C T MXD3 Intron 0.12 TCGA-CG-5723-01 5 176761333 176761333 C T LMAN2 Missense_Mutation p.D288N 0.29 deleterious(0.05) probably_damaging(0.952) TCGA-CG-5723-01 5 177473894 177473894 G A FAM153C Missense_Mutation p.A99T 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.682) TCGA-CG-5723-01 5 178413540 178413540 C T GRM6 Missense_Mutation p.R572H 0.21 tolerated(0.4) benign(0.008) TCGA-CG-5723-01 5 178413854 178413854 C T GRM6 Silent p.E495E 0.29 TCGA-CG-5723-01 5 179743769 179743769 C T GFPT2 Missense_Mutation p.V383M 0.29 tolerated(0.26) benign(0.069) TCGA-CG-5723-01 5 180053236 180053236 C T FLT4 Missense_Mutation p.R378H 0.10 deleterious(0.03) benign(0.052) TCGA-CG-5723-01 5 180166230 180166230 A - OR2Y1 Frame_Shift_Del p.Y277Ifs*3 0.22 TCGA-CG-5723-01 5 180625788 180625788 C - TRIM7 Frame_Shift_Del p.G297Afs*11 0.22 TCGA-CG-5723-01 5 180687440 180687440 T C TRIM52 Silent p.E125E 0.20 TCGA-CG-5723-01 5 19838877 19838877 A G CDH18 Silent p.Y73Y 0.23 TCGA-CG-5723-01 5 31449476 31449476 A G DROSHA Silent p.D911D 0.23 TCGA-CG-5723-01 5 31553181 31553181 T - C5orf22 3'UTR 0.40 TCGA-CG-5723-01 5 32090071 32090071 T C PDZD2 Missense_Mutation p.S2173P 0.27 tolerated(0.35) probably_damaging(0.921) TCGA-CG-5723-01 5 32097388 32097390 GAA - PDZD2 In_Frame_Del p.E2618del 0.18 TCGA-CG-5723-01 5 32355834 32355834 T - ZFR 3'UTR 0.20 TCGA-CG-5723-01 5 32712294 32712294 T C NPR3 Missense_Mutation p.Y138H 0.18 deleterious(0.01) benign(0.196) TCGA-CG-5723-01 5 34823324 34823324 C T RAI14 Silent p.L462L 0.22 TCGA-CG-5723-01 5 35691158 35691158 C T SPEF2 Missense_Mutation p.A515V 0.19 tolerated(0.05) possibly_damaging(0.686) TCGA-CG-5723-01 5 3599722 3599722 C T IRX1 Silent p.D220D 0.18 TCGA-CG-5723-01 5 37017251 37017251 G A NIPBL Missense_Mutation p.R1636H 0.10 tolerated(0.07) benign(0.29) TCGA-CG-5723-01 5 37815784 37815784 T G GDNF Missense_Mutation p.K219T 0.17 deleterious(0) probably_damaging(0.958) TCGA-CG-5723-01 5 38947433 38947433 G A RICTOR Missense_Mutation p.A1416V 0.22 tolerated(0.25) benign(0.019) TCGA-CG-5723-01 5 40852450 40852450 C T CARD6 Missense_Mutation p.T339I 0.26 deleterious(0) possibly_damaging(0.706) TCGA-CG-5723-01 5 41862805 41862805 A G OXCT1 Silent p.F42F 0.22 TCGA-CG-5723-01 5 43161497 43161497 C T ZNF131 Missense_Mutation p.A173V 0.18 deleterious(0.03) benign(0.178) TCGA-CG-5723-01 5 52177731 52177731 C T ITGA1 Silent p.N217N 0.12 TCGA-CG-5723-01 5 52377476 52377478 TCT - ITGA2 In_Frame_Del p.S1034del 0.18 TCGA-CG-5723-01 5 5463182 5463182 A - KIAA0947 Frame_Shift_Del p.N1247Ifs*17 0.21 TCGA-CG-5723-01 5 66461665 66461665 G - MAST4 Frame_Shift_Del p.A2221Pfs*62 0.34 TCGA-CG-5723-01 5 70806878 70806878 A - BDP1 Frame_Shift_Del p.N1321Tfs*3 0.22 TCGA-CG-5723-01 5 70942086 70942086 T C MCCC2 Missense_Mutation p.F400L 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.572) TCGA-CG-5723-01 5 71491429 71491429 A - MAP1B Frame_Shift_Del p.K751Nfs*5 0.24 TCGA-CG-5723-01 5 71533950 71533950 C T MRPS27 Missense_Mutation p.R96Q 0.33 deleterious(0) probably_damaging(0.97) TCGA-CG-5723-01 5 71739855 71739855 C T ZNF366 Missense_Mutation p.A655T 0.21 tolerated_low_confidence(0.48) benign(0.001) TCGA-CG-5723-01 5 76932754 76932754 G - OTP Frame_Shift_Del p.A114Hfs*30 0.11 TCGA-CG-5723-01 5 82815203 82815203 G A VCAN Missense_Mutation p.A360T 0.25 tolerated(0.24) benign(0.048) TCGA-CG-5723-01 5 85913901 85913901 C T COX7C Missense_Mutation p.T10I 0.21 tolerated(0.07) possibly_damaging(0.575) TCGA-CG-5723-01 5 9044506 9044506 G A SEMA5A Silent p.Y1028Y 0.20 TCGA-CG-5723-01 5 90449208 90449208 A - GPR98 Frame_Shift_Del p.T6267Lfs*22 0.19 TCGA-CG-5723-01 5 9108327 9108327 T G SEMA5A Silent p.T666T 0.14 TCGA-CG-5723-01 5 95234467 95234467 T - ELL2 Frame_Shift_Del p.A335Pfs*6 0.19 TCGA-CG-5723-01 5 95748029 95748029 A G PCSK1 Missense_Mutation p.V292A 0.20 deleterious(0.02) possibly_damaging(0.546) TCGA-CG-5723-01 5 96363452 96363452 C A LNPEP Silent p.S960S 0.15 TCGA-CG-5723-01 6 100838779 100838779 C T SIM1 Missense_Mutation p.A587T 0.25 tolerated_low_confidence(0.71) benign(0.002) TCGA-CG-5723-01 6 101037604 101037604 G A ASCC3 Missense_Mutation p.A1819V 0.18 deleterious(0) probably_damaging(0.954) TCGA-CG-5723-01 6 101315870 101315870 C A ASCC3 Missense_Mutation p.A2S 0.16 tolerated_low_confidence(0.44) benign(0.002) TCGA-CG-5723-01 6 107390422 107390422 C T BEND3 Missense_Mutation p.R658H 0.24 deleterious(0.01) probably_damaging(0.997) TCGA-CG-5723-01 6 107908293 107908293 G T SOBP Nonsense_Mutation p.E195* 0.19 TCGA-CG-5723-01 6 111498462 111498462 G T SLC16A10 Missense_Mutation p.G179V 0.22 deleterious(0) probably_damaging(1) TCGA-CG-5723-01 6 111697578 111697578 A - REV3L Frame_Shift_Del p.F660Lfs*53 0.12 TCGA-CG-5723-01 6 11191366 11191366 G A NEDD9 Missense_Mutation p.P246S 0.26 tolerated(0.25) benign(0.005) TCGA-CG-5723-01 6 116580017 116580017 T C TSPYL4 5'Flank 0.10 TCGA-CG-5723-01 6 117237372 117237372 T - RFX6 Frame_Shift_Del p.L291Yfs*53 0.23 TCGA-CG-5723-01 6 117706978 117706978 G A ROS1 Silent p.G724G 0.06 TCGA-CG-5723-01 6 117860470 117860470 T C DCBLD1 Silent p.S343S 0.20 TCGA-CG-5723-01 6 121412168 121412168 G A TBC1D32 Missense_Mutation p.T1162I 0.15 deleterious(0.03) possibly_damaging(0.813) TCGA-CG-5723-01 6 122743435 122743435 T C HSF2 Silent p.D274D 0.21 TCGA-CG-5723-01 6 127796999 127796999 G A SOGA3 Silent p.Y724Y 0.22 TCGA-CG-5723-01 6 128134568 128134568 T - THEMIS Frame_Shift_Del p.V407Wfs*2 0.13 TCGA-CG-5723-01 6 128297891 128297891 G A PTPRK Nonsense_Mutation p.R1300* 0.26 TCGA-CG-5723-01 6 131602673 131602673 A - AKAP7 Frame_Shift_Del p.K286Rfs*11 0.21 TCGA-CG-5723-01 6 131914253 131914253 A T MED23 Missense_Mutation p.F1097L 0.20 deleterious(0) probably_damaging(0.966) TCGA-CG-5723-01 6 13365145 13365145 C T GFOD1 Missense_Mutation p.A335T 0.27 deleterious(0) probably_damaging(0.962) TCGA-CG-5723-01 6 138601240 138601240 A C KIAA1244 Silent p.G800G 0.25 TCGA-CG-5723-01 6 138632618 138632618 G A KIAA1244 Missense_Mutation p.A1391T 0.19 deleterious(0) possibly_damaging(0.589) TCGA-CG-5723-01 6 147684582 147684582 A - STXBP5 Frame_Shift_Del p.D888Tfs*6 0.31 TCGA-CG-5723-01 6 148865429 148865429 C T SASH1 Silent p.H941H 0.18 TCGA-CG-5723-01 6 149342593 149342593 G A UST Missense_Mutation p.V305M 0.25 deleterious(0.01) possibly_damaging(0.829) TCGA-CG-5723-01 6 151869460 151869460 A G CCDC170 Missense_Mutation p.N204D 0.17 deleterious(0.02) benign(0.238) TCGA-CG-5723-01 6 15496493 15496493 C A JARID2 Missense_Mutation p.A346D 0.20 tolerated_low_confidence(0.66) benign(0.013) TCGA-CG-5723-01 6 155776222 155776222 C T NOX3 Silent p.T30T 0.17 TCGA-CG-5723-01 6 155776956 155776956 G A NOX3 5'UTR 0.18 TCGA-CG-5723-01 6 157522175 157522175 G T ARID1B Missense_Mutation p.G1483C 0.30 probably_damaging(0.994) TCGA-CG-5723-01 6 157803268 157803268 T G ZDHHC14 Missense_Mutation p.L72R 0.12 deleterious(0) probably_damaging(0.921) TCGA-CG-5723-01 6 158449969 158449969 A G SYNJ2 Silent p.S132S 0.08 TCGA-CG-5723-01 6 160196216 160196216 A - ACAT2 Frame_Shift_Del p.K170Nfs*4 0.22 TCGA-CG-5723-01 6 161014990 161014990 C T LPA Missense_Mutation p.G1210D 0.20 tolerated(0.1) possibly_damaging(0.7) TCGA-CG-5723-01 6 161134156 161134156 A C PLG Missense_Mutation p.E182D 0.20 tolerated(0.07) benign(0.012) TCGA-CG-5723-01 6 161159605 161159605 C T PLG Missense_Mutation p.S613F 0.14 tolerated(0.08) possibly_damaging(0.755) TCGA-CG-5723-01 6 163956101 163956101 G A QKI Missense_Mutation p.A164T 0.15 deleterious(0) probably_damaging(0.989) TCGA-CG-5723-01 6 163984455 163984455 C G QKI Missense_Mutation p.A213G 0.18 tolerated(0.13) benign(0.005) TCGA-CG-5723-01 6 163987695 163987695 T - QKI Intron 0.37 TCGA-CG-5723-01 6 163987788 163987788 C T QKI Missense_Mutation p.R324C 0.28 tolerated(0.08) probably_damaging(0.997) TCGA-CG-5723-01 6 166571818 166571818 C T T Silent p.S431S 0.21 TCGA-CG-5723-01 6 167352465 167352465 C T RNASET2 Missense_Mutation p.A122T 0.22 deleterious(0) probably_damaging(0.995) TCGA-CG-5723-01 6 168949813 168949813 T C SMOC2 Silent p.I200I 0.23 TCGA-CG-5723-01 6 170117976 170117977 TG - PHF10 Frame_Shift_Del p.H117Qfs*14 0.18 TCGA-CG-5723-01 6 170592611 170592611 C - DLL1 Frame_Shift_Del p.E586Rfs*5 0.25 TCGA-CG-5723-01 6 170597466 170597466 G A DLL1 Silent p.F177F 0.18 TCGA-CG-5723-01 6 18258595 18258596 - T DEK Frame_Shift_Ins p.V63Sfs*28 0.20 TCGA-CG-5723-01 6 18399734 18399734 T C RNF144B 5'UTR 0.21 TCGA-CG-5723-01 6 20490696 20490697 - T E2F3 3'UTR 0.21 TCGA-CG-5723-01 6 24588957 24588957 G A KIAA0319 Silent p.T286T 0.19 TCGA-CG-5723-01 6 25966795 25966795 C A TRIM38 Silent p.T15T 0.22 TCGA-CG-5723-01 6 26018017 26018017 A - HIST1H1A 5'UTR 0.21 TCGA-CG-5723-01 6 26184455 26184455 C A HIST1H2BE 3'Flank 0.29 TCGA-CG-5723-01 6 26250706 26250706 C A HIST1H3F Missense_Mutation p.R43M 0.23 deleterious_low_confidence(0) possibly_damaging(0.605) TCGA-CG-5723-01 6 26465541 26465541 G - BTN2A1 Frame_Shift_Del p.E282Kfs*13 0.15 TCGA-CG-5723-01 6 27833428 27833428 G A HIST1H2AL Missense_Mutation p.G99D 0.21 deleterious_low_confidence(0.03) benign(0.012) TCGA-CG-5723-01 6 28227419 28227419 G A NKAPL Silent p.S90S 0.27 TCGA-CG-5723-01 6 28334042 28334042 A - ZKSCAN3 Frame_Shift_Del p.N534Tfs*31 0.19 TCGA-CG-5723-01 6 29323994 29323994 A G OR5V1 5'UTR 0.22 TCGA-CG-5723-01 6 29408492 29408492 C T OR10C1 Missense_Mutation p.R234C 0.26 tolerated(0.11) benign(0.012) TCGA-CG-5723-01 6 30621048 30621048 T - DHX16 Frame_Shift_Del p.I1033* 0.23 TCGA-CG-5723-01 6 30889916 30889916 C - VARS2 Frame_Shift_Del p.L642Cfs*48 0.20 TCGA-CG-5723-01 6 31508954 31508954 G A DDX39B Intron 0.29 TCGA-CG-5723-01 6 31626716 31626716 C G C6orf47 3'UTR 0.27 TCGA-CG-5723-01 6 31704062 31704062 G A CLIC1 Missense_Mutation p.P6S 0.24 deleterious(0.04) benign(0.009) TCGA-CG-5723-01 6 31829855 31829855 G A NEU1 Silent p.L91L 0.17 TCGA-CG-5723-01 6 32117390 32117390 T C PRRT1 Missense_Mutation p.Y223C 0.12 deleterious(0) possibly_damaging(0.903) TCGA-CG-5723-01 6 32137211 32137211 G A AGPAT1 Missense_Mutation p.R232W 0.21 deleterious(0) possibly_damaging(0.676) TCGA-CG-5723-01 6 32803500 32803500 C T TAP2 Missense_Mutation p.R220Q 0.21 deleterious(0.01) possibly_damaging(0.627) TCGA-CG-5723-01 6 32948441 32948443 CTC - BRD2 In_Frame_Del p.S828del 0.36 TCGA-CG-5723-01 6 33373357 33373357 G T KIFC1 Missense_Mutation p.E495D 0.31 tolerated(0.19) benign(0.158) TCGA-CG-5723-01 6 33423605 33423605 T - ZBTB9 Frame_Shift_Del p.R246Vfs*10 0.21 TCGA-CG-5723-01 6 33643506 33643506 G A ITPR3 Missense_Mutation p.G1052D 0.26 deleterious(0) probably_damaging(1) TCGA-CG-5723-01 6 34008452 34008452 G A GRM4 Silent p.Y414Y 0.16 TCGA-CG-5723-01 6 34101128 34101128 A T GRM4 Missense_Mutation p.I49N 0.16 deleterious(0) possibly_damaging(0.583) TCGA-CG-5723-01 6 34499507 34499507 G A PACSIN1 Missense_Mutation p.V390M 0.25 deleterious(0) probably_damaging(0.999) TCGA-CG-5723-01 6 34804017 34804017 C T UHRF1BP1 Missense_Mutation p.R309C 0.26 tolerated(0.07) possibly_damaging(0.485) TCGA-CG-5723-01 6 35088275 35088275 G - TCP11 Frame_Shift_Del p.T302Qfs*9 0.25 TCGA-CG-5723-01 6 35213108 35213108 C - SCUBE3 Frame_Shift_Del p.P837Hfs*27 0.23 TCGA-CG-5723-01 6 35392439 35392439 C T PPARD Missense_Mutation p.R321C 0.17 deleterious(0) probably_damaging(1) TCGA-CG-5723-01 6 35543611 35543611 G A FKBP5 3'UTR 0.24 TCGA-CG-5723-01 6 35755818 35755818 T A CLPSL1 3'UTR 0.09 TCGA-CG-5723-01 6 36343699 36343699 C T ETV7 Missense_Mutation p.A86T 0.20 deleterious(0) probably_damaging(0.996) TCGA-CG-5723-01 6 3850865 3850865 G A FAM50B Missense_Mutation p.V274M 0.17 deleterious(0) probably_damaging(0.977) TCGA-CG-5723-01 6 40360464 40360464 G A LRFN2 Silent p.L530L 0.19 TCGA-CG-5723-01 6 40400212 40400212 G - LRFN2 Frame_Shift_Del p.P214Lfs*13 0.36 TCGA-CG-5723-01 6 41029581 41029583 GAG - APOBEC2 In_Frame_Del p.E217del 0.18 TCGA-CG-5723-01 6 41533495 41533495 C T FOXP4 5'UTR 0.20 TCGA-CG-5723-01 6 41533592 41533592 G A FOXP4 Missense_Mutation p.G32S 0.28 tolerated_low_confidence(0.06) benign(0.004) TCGA-CG-5723-01 6 41752759 41752759 G - PRICKLE4 Frame_Shift_Del p.V111* 0.20 TCGA-CG-5723-01 6 41773695 41773695 C A USP49 Nonsense_Mutation p.E343* 0.33 TCGA-CG-5723-01 6 42227276 42227276 C T TRERF1 Silent p.P690P 0.20 TCGA-CG-5723-01 6 42689868 42689868 C - PRPH2 Frame_Shift_Del p.V69Cfs*30 0.29 TCGA-CG-5723-01 6 42832627 42832627 A - GLTSCR1L Frame_Shift_Del p.T897Qfs*8 0.20 TCGA-CG-5723-01 6 43010580 43010580 G A CUL7 Missense_Mutation p.A1286V 0.29 deleterious(0.01) possibly_damaging(0.521) TCGA-CG-5723-01 6 43222808 43222808 C T TTBK1 Nonsense_Mutation p.R200* 0.31 TCGA-CG-5723-01 6 43418412 43418413 - G DLK2 Frame_Shift_Ins p.G340Wfs*22 0.15 TCGA-CG-5723-01 6 43480020 43480020 G A YIPF3 Missense_Mutation p.P313L 0.28 tolerated(0.06) benign(0.182) TCGA-CG-5723-01 6 43612906 43612906 G A RSPH9 Missense_Mutation p.R24H 0.30 tolerated(0.08) probably_damaging(0.923) TCGA-CG-5723-01 6 44198398 44198398 G A SLC29A1 Missense_Mutation p.R228H 0.27 tolerated(0.58) benign(0.032) TCGA-CG-5723-01 6 4943797 4943797 T C CDYL Missense_Mutation p.F380S 0.22 deleterious(0) probably_damaging(0.988) TCGA-CG-5723-01 6 4952537 4952537 C T CDYL Missense_Mutation p.A457V 0.20 deleterious(0.01) possibly_damaging(0.545) TCGA-CG-5723-01 6 49825053 49825053 T C CRISP1 Missense_Mutation p.M21V 0.24 tolerated(0.59) benign(0) TCGA-CG-5723-01 6 51892954 51892954 C T PKHD1 Missense_Mutation p.G1187E 0.09 tolerated(0.07) possibly_damaging(0.901) TCGA-CG-5723-01 6 52883237 52883237 G A ICK Missense_Mutation p.A185V 0.24 deleterious(0) probably_damaging(0.998) TCGA-CG-5723-01 6 53519759 53519759 T - KLHL31 Frame_Shift_Del p.D105Tfs*15 0.27 TCGA-CG-5723-01 6 5369002 5369002 A G FARS2 Missense_Mutation p.T67A 0.25 deleterious(0.02) benign(0.015) TCGA-CG-5723-01 6 56047377 56047377 G A COL21A1 Silent p.L14L 0.16 TCGA-CG-5723-01 6 56382024 56382024 C T DST Missense_Mutation p.C3487Y 0.19 benign(0.002) TCGA-CG-5723-01 6 56489995 56489995 C T DST Missense_Mutation p.R1060H 0.18 probably_damaging(0.977) TCGA-CG-5723-01 6 56501366 56501366 C T DST Missense_Mutation p.A480T 0.18 benign(0.012) TCGA-CG-5723-01 6 64423498 64423500 AGA - PHF3 In_Frame_Del p.K2006del 0.31 TCGA-CG-5723-01 6 70944498 70944498 G A COL9A1 Missense_Mutation p.P753L 0.28 possibly_damaging(0.575) TCGA-CG-5723-01 6 70991121 70991121 G - COL9A1 Frame_Shift_Del p.P283Lfs*45 0.22 TCGA-CG-5723-01 6 72011140 72011140 G A OGFRL1 Silent p.E248E 0.22 TCGA-CG-5723-01 6 7248924 7248924 C T RREB1 Missense_Mutation p.A1651V 0.19 deleterious(0) benign(0.22) TCGA-CG-5723-01 6 7576615 7576615 C T DSP Missense_Mutation p.R907C 0.22 probably_damaging(0.989) TCGA-CG-5723-01 6 7580509 7580509 A - DSP Frame_Shift_Del p.N1364Ifs*32 0.19 TCGA-CG-5723-01 6 7585193 7585193 T C DSP Silent p.G2566G 0.22 TCGA-CG-5723-01 6 75875263 75875263 A G COL12A1 Silent p.S981S 0.22 TCGA-CG-5723-01 6 75899298 75899298 T - COL12A1 Frame_Shift_Del p.I210Ffs*9 0.23 TCGA-CG-5723-01 6 75968604 75968604 G A TMEM30A Missense_Mutation p.R262C 0.24 deleterious(0) probably_damaging(0.998) TCGA-CG-5723-01 6 76425219 76425219 G T SENP6 Missense_Mutation p.S1083I 0.21 deleterious(0.02) benign(0.424) TCGA-CG-5723-01 6 76623846 76623846 G A MYO6 Missense_Mutation p.R1169H 0.24 deleterious(0) probably_damaging(1) TCGA-CG-5723-01 6 76624589 76624589 C T MYO6 Missense_Mutation p.R1240C 0.22 deleterious(0) probably_damaging(0.998) TCGA-CG-5723-01 6 82933262 82933262 A C IBTK Missense_Mutation p.I340S 0.17 deleterious(0) benign(0.041) TCGA-CG-5723-01 6 84870551 84870551 T - KIAA1009 Frame_Shift_Del p.I921Ffs*15 0.21 TCGA-CG-5723-01 6 88136278 88136278 T C C6ORF165 Missense_Mutation p.M292T 0.17 tolerated(0.59) benign(0.005) TCGA-CG-5723-01 6 88775919 88775920 - G SPACA1 Frame_Shift_Ins p.A253Gfs*7 0.23 TCGA-CG-5723-01 6 88854388 88854388 G T CNR1 Silent p.A202A 0.20 TCGA-CG-5723-01 6 89888394 89888394 T - GABRR1 3'UTR 0.33 TCGA-CG-5723-01 6 90077659 90077659 T A RRAGD 3'UTR 0.24 TCGA-CG-5723-01 6 99956514 99956514 A C USP45 Missense_Mutation p.I82S 0.22 deleterious(0) possibly_damaging(0.697) TCGA-CG-5723-01 7 100201128 100201128 C - PCOLCE Frame_Shift_Del p.P59Lfs*9 0.18 TCGA-CG-5723-01 7 100276081 100276081 G A GNB2 Missense_Mutation p.D254N 0.23 deleterious(0) probably_damaging(0.997) TCGA-CG-5723-01 7 100390033 100390033 C T ZAN Silent p.C2572C 0.24 TCGA-CG-5723-01 7 100469273 100469273 C T TRIP6 Missense_Mutation p.R370C 0.15 tolerated(0.22) benign(0.01) TCGA-CG-5723-01 7 100853896 100853896 G A PLOD3 Missense_Mutation p.R473W 0.30 deleterious(0) probably_damaging(0.943) TCGA-CG-5723-01 7 100855927 100855927 G - PLOD3 Frame_Shift_Del p.R297Gfs*61 0.30 TCGA-CG-5723-01 7 102760123 102760123 A - NAPEPLD Frame_Shift_Del p.F281Sfs*14 0.20 TCGA-CG-5723-01 7 106508673 106508673 G A PIK3CG Missense_Mutation p.V223I 0.29 tolerated(0.34) benign(0.027) TCGA-CG-5723-01 7 107822325 107822325 C T NRCAM Missense_Mutation p.E863K 0.23 tolerated(0.63) benign(0.021) TCGA-CG-5723-01 7 107834488 107834488 C A NRCAM Missense_Mutation p.R586S 0.29 tolerated(0.49) benign(0.001) TCGA-CG-5723-01 7 111372303 111372303 A G DOCK4 Silent p.P1811P 0.06 TCGA-CG-5723-01 7 11142222 11142223 - AT PHF14 3'UTR 0.24 TCGA-CG-5723-01 7 112127036 112127037 - T LSMEM1 Frame_Shift_Ins p.V65Cfs*30 0.27 TCGA-CG-5723-01 7 116955281 116955281 G A WNT2 Silent p.S144S 0.25 TCGA-CG-5723-01 7 122635425 122635425 A - TAS2R16 Frame_Shift_Del p.F88Lfs*8 0.23 TCGA-CG-5723-01 7 123593853 123593853 G A SPAM1 Missense_Mutation p.G77R 0.16 deleterious(0) probably_damaging(0.92) TCGA-CG-5723-01 7 127014342 127014342 A G ZNF800 Missense_Mutation p.S350P 0.25 tolerated(0.06) possibly_damaging(0.497) TCGA-CG-5723-01 7 127236393 127236393 C T FSCN3 Missense_Mutation p.R285C 0.23 tolerated(0.21) benign(0) TCGA-CG-5723-01 7 127955004 127955004 G A RBM28 Nonsense_Mutation p.Q620* 0.18 TCGA-CG-5723-01 7 128481391 128481391 G - FLNC Frame_Shift_Del p.A661Pfs*10 0.22 TCGA-CG-5723-01 7 128588011 128588011 G A IRF5 Missense_Mutation p.R339H 0.15 deleterious(0) probably_damaging(0.998) TCGA-CG-5723-01 7 128845469 128845469 T C SMO Missense_Mutation p.W256R 0.25 deleterious(0) probably_damaging(0.998) TCGA-CG-5723-01 7 129770479 129770479 C T KLHDC10 Silent p.L408L 0.05 TCGA-CG-5723-01 7 131848964 131848964 G A PLXNA4 Silent p.G1479G 0.19 TCGA-CG-5723-01 7 132192606 132192606 G T PLXNA4 Missense_Mutation p.L283I 0.25 tolerated(0.26) probably_damaging(0.996) TCGA-CG-5723-01 7 132973835 132973835 G A EXOC4 Missense_Mutation p.A146T 0.19 tolerated(0.21) possibly_damaging(0.663) TCGA-CG-5723-01 7 133164813 133164813 G A EXOC4 Silent p.S446S 0.21 TCGA-CG-5723-01 7 133863282 133863282 C - LRGUK Frame_Shift_Del p.P380Lfs*10 0.19 TCGA-CG-5723-01 7 135047807 135047807 C T CNOT4 Missense_Mutation p.A658T 0.26 tolerated_low_confidence(0.61) benign(0.004) TCGA-CG-5723-01 7 141795515 141795515 T C MGAM Splice_Site p.X1640_splice 0.05 TCGA-CG-5723-01 7 148921352 148921352 G A ZNF282 Silent p.E543E 0.17 TCGA-CG-5723-01 7 149318586 149318586 G A ZNF767 RNA 0.34 TCGA-CG-5723-01 7 149508775 149508775 G A SSPO RNA 0.23 TCGA-CG-5723-01 7 150647278 150647278 G A KCNH2 Silent p.G792G 0.24 TCGA-CG-5723-01 7 150671835 150671835 C T KCNH2 Missense_Mutation p.E91K 0.36 deleterious(0) benign(0.262) TCGA-CG-5723-01 7 150696110 150696110 A C NOS3 Missense_Mutation p.D298A 0.19 tolerated(0.21) benign(0.066) TCGA-CG-5723-01 7 150725583 150725583 T A ABCB8 5'UTR 0.44 TCGA-CG-5723-01 7 150752436 150752436 G A CDK5 Missense_Mutation p.P170S 0.27 deleterious(0) probably_damaging(1) TCGA-CG-5723-01 7 150814817 150814817 G A AGAP3 Missense_Mutation p.S220N 0.24 tolerated(0.38) benign(0.002) TCGA-CG-5723-01 7 157041136 157041136 C T UBE3C Silent p.A852A 0.24 TCGA-CG-5723-01 7 158935152 158935152 G A VIPR2 Missense_Mutation p.T46I 0.23 tolerated(0.06) benign(0.011) TCGA-CG-5723-01 7 20682918 20682919 - T ABCB5 Frame_Shift_Ins p.H145Sfs*12 0.19 TCGA-CG-5723-01 7 20698756 20698756 G A ABCB5 Intron 0.26 TCGA-CG-5723-01 7 22197474 22197474 T - RAPGEF5 Frame_Shift_Del p.K366Rfs*22 0.15 TCGA-CG-5723-01 7 2279097 2279097 G A FTSJ2 Missense_Mutation p.A85V 0.17 deleterious(0) probably_damaging(0.949) TCGA-CG-5723-01 7 23164385 23164385 T C KLHL7 Missense_Mutation p.F101S 0.24 deleterious(0) benign(0.177) TCGA-CG-5723-01 7 23547109 23547109 G A TRA2A Missense_Mutation p.R191W 0.26 deleterious(0) probably_damaging(1) TCGA-CG-5723-01 7 24738827 24738827 T G DFNA5 Missense_Mutation p.T437P 0.31 deleterious(0.01) benign(0.09) TCGA-CG-5723-01 7 2594050 2594050 C T BRAT1 Missense_Mutation p.A6T 0.30 tolerated(0.11) benign(0.007) TCGA-CG-5723-01 7 27135386 27135386 C T HOXA1 Missense_Mutation p.G49D 0.21 tolerated(0.07) benign(0.43) TCGA-CG-5723-01 7 27194919 27194919 C T HOXA7 Intron 0.35 TCGA-CG-5723-01 7 2968323 2968323 G - CARD11 Frame_Shift_Del p.R555Gfs*45 0.24 TCGA-CG-5723-01 7 29963489 29963489 A G SCRN1 3'UTR 0.22 TCGA-CG-5723-01 7 30673453 30673453 A - GARS Frame_Shift_Del p.E735Rfs*13 0.22 TCGA-CG-5723-01 7 30795381 30795381 C A INMT Missense_Mutation p.L236I 0.23 tolerated(0.25) possibly_damaging(0.488) TCGA-CG-5723-01 7 33136929 33136929 C T RP9 Missense_Mutation p.C120Y 0.18 deleterious(0) probably_damaging(0.919) TCGA-CG-5723-01 7 33296948 33296948 T G BBS9 Silent p.P181P 0.16 TCGA-CG-5723-01 7 33397489 33397489 T C BBS9 Silent p.C525C 0.20 TCGA-CG-5723-01 7 34917721 34917721 G A NPSR1 Silent p.A353A 0.25 TCGA-CG-5723-01 7 41729889 41729889 G A INHBA Missense_Mutation p.R214W 0.14 deleterious(0) probably_damaging(0.978) TCGA-CG-5723-01 7 42085063 42085063 C T GLI3 Missense_Mutation p.S249N 0.23 tolerated(0.13) probably_damaging(0.995) TCGA-CG-5723-01 7 42950002 42950002 G A C7orf25 Silent p.I224I 0.23 TCGA-CG-5723-01 7 43684886 43684886 G A COA1 Silent p.I76I 0.22 TCGA-CG-5723-01 7 44120414 44120414 G - POLM Frame_Shift_Del p.P97Qfs*6 0.26 TCGA-CG-5723-01 7 44576448 44576448 C - NPC1L1 Frame_Shift_Del p.Y559Tfs*12 0.23 TCGA-CG-5723-01 7 44579262 44579262 T G NPC1L1 Missense_Mutation p.E245A 0.32 tolerated(0.08) benign(0.009) TCGA-CG-5723-01 7 44579700 44579700 A G NPC1L1 Missense_Mutation p.L99P 0.27 deleterious(0) probably_damaging(0.999) TCGA-CG-5723-01 7 47408881 47408881 G T TNS3 Silent p.T454T 0.25 TCGA-CG-5723-01 7 48028463 48028463 T - SUN3 Frame_Shift_Del p.K292Nfs*9 0.20 TCGA-CG-5723-01 7 48319362 48319362 C T ABCA13 Silent p.T2857T 0.21 TCGA-CG-5723-01 7 4876168 4876168 C - RADIL Frame_Shift_Del p.D202Mfs*19 0.19 TCGA-CG-5723-01 7 51096683 51096683 C T COBL Missense_Mutation p.G704S 0.27 deleterious(0) probably_damaging(1) TCGA-CG-5723-01 7 53104026 53104026 G T POM121L12 Missense_Mutation p.S221I 0.14 tolerated(1) benign(0) TCGA-CG-5723-01 7 53104101 53104102 - T POM121L12 Frame_Shift_Ins p.C248Lfs*2 0.23 TCGA-CG-5723-01 7 5567738 5567738 T C ACTB Missense_Mutation p.Y294C 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.891) TCGA-CG-5723-01 7 56148844 56148844 C T PHKG1 Missense_Mutation p.G388D 0.32 deleterious(0) probably_damaging(0.984) TCGA-CG-5723-01 7 6037037 6037037 A C PMS2 Silent p.P241P 0.18 TCGA-CG-5723-01 7 6210912 6210912 C T CYTH3 Silent p.E161E 0.27 TCGA-CG-5723-01 7 63538469 63538469 G A ZNF727 Missense_Mutation p.A348T 0.13 deleterious(0.04) probably_damaging(0.992) TCGA-CG-5723-01 7 65225080 65225080 G A SNORA15 RNA 0.24 TCGA-CG-5723-01 7 70255700 70255700 G A AUTS2 Silent p.R1166R 0.32 TCGA-CG-5723-01 7 71177209 71177209 C T WBSCR17 3'UTR 0.12 TCGA-CG-5723-01 7 72159779 72159779 A G MIR4650-2 5'Flank 0.26 TCGA-CG-5723-01 7 72884801 72884801 C T BAZ1B Missense_Mutation p.R869H 0.21 deleterious(0.01) benign(0.444) TCGA-CG-5723-01 7 73009996 73009996 G A MLXIPL Missense_Mutation p.R761C 0.18 tolerated(0.06) benign(0.242) TCGA-CG-5723-01 7 75034218 75034218 G - TRIM73 Frame_Shift_Del p.G199Vfs*80 0.27 TCGA-CG-5723-01 7 75517524 75517524 A G RHBDD2 Missense_Mutation p.S318G 0.23 tolerated_low_confidence(0.96) benign(0) TCGA-CG-5723-01 7 7557425 7557426 - C COL28A1 Splice_Site p.X285_splice 0.22 TCGA-CG-5723-01 7 76959580 76959581 CT - GSAP Frame_Shift_Del p.E550Vfs*7 0.09 TCGA-CG-5723-01 7 77256248 77256248 A - PTPN12 Frame_Shift_Del p.N419Mfs*8 0.17 TCGA-CG-5723-01 7 81346622 81346622 T C HGF Missense_Mutation p.D444G 0.22 deleterious(0) probably_damaging(1) TCGA-CG-5723-01 7 81588629 81588629 G A CACNA2D1 Nonsense_Mutation p.R1041* 0.22 TCGA-CG-5723-01 7 83277848 83277848 G A SEMA3E Missense_Mutation p.A4V 0.20 tolerated(0.06) benign(0) TCGA-CG-5723-01 7 87073078 87073078 A G ABCB4 Silent p.I377I 0.22 TCGA-CG-5723-01 7 881705 881705 G A SUN1 Missense_Mutation p.R130Q 0.30 tolerated(0.12) possibly_damaging(0.475) TCGA-CG-5723-01 7 88963047 88963047 T C ZNF804B Missense_Mutation p.S251P 0.25 deleterious(0.05) benign(0.113) TCGA-CG-5723-01 7 88964676 88964676 G T ZNF804B Nonsense_Mutation p.E794* 0.30 TCGA-CG-5723-01 7 92028112 92028112 A C ANKIB1 Missense_Mutation p.N1040T 0.26 tolerated_low_confidence(0.66) benign(0.007) TCGA-CG-5723-01 7 96651419 96651419 T C DLX5 Intron 0.24 TCGA-CG-5723-01 7 97861206 97861206 G A TECPR1 Silent p.D628D 0.23 TCGA-CG-5723-01 7 97944910 97944910 A G BAIAP2L1 Silent p.V167V 0.26 TCGA-CG-5723-01 7 98453803 98453803 G A TMEM130 Silent p.T185T 0.20 TCGA-CG-5723-01 7 98609946 98609946 C T TRRAP Missense_Mutation p.R3850C 0.29 probably_damaging(0.993) TCGA-CG-5723-01 7 99091496 99091496 C A ZNF394 Missense_Mutation p.G448W 0.18 deleterious(0) probably_damaging(0.994) TCGA-CG-5723-01 7 99170525 99170525 A - ZNF655 Frame_Shift_Del p.K301Nfs*25 0.20 TCGA-CG-5723-01 7 99917282 99917282 C T SPDYE3 Missense_Mutation p.R481C 0.19 deleterious_low_confidence(0.03) benign(0.014) TCGA-CG-5723-01 8 100866205 100866205 G A VPS13B Missense_Mutation p.A3555T 0.21 tolerated(0.24) possibly_damaging(0.483) TCGA-CG-5723-01 8 101165723 101165723 T - POLR2K 3'UTR 0.28 TCGA-CG-5723-01 8 101585974 101585974 A - SNX31 3'UTR 0.23 TCGA-CG-5723-01 8 10285908 10285908 C T MSRA 3'UTR 0.27 TCGA-CG-5723-01 8 103297393 103297393 C T UBR5 Silent p.A1886A 0.21 TCGA-CG-5723-01 8 104340619 104340619 T - FZD6 Frame_Shift_Del p.F507Lfs*25 0.16 TCGA-CG-5723-01 8 105361783 105361783 G T DCSTAMP Nonsense_Mutation p.E335* 0.22 TCGA-CG-5723-01 8 105459576 105459576 C T DPYS Silent p.A193A 0.30 TCGA-CG-5723-01 8 106815064 106815064 A G ZFPM2 Silent p.K918K 0.23 TCGA-CG-5723-01 8 109001362 109001362 G A RSPO2 Missense_Mutation p.R69C 0.22 deleterious(0) probably_damaging(0.976) TCGA-CG-5723-01 8 109797345 109797345 C - TMEM74 5'UTR 0.21 TCGA-CG-5723-01 8 110348379 110348379 C T ENY2 Missense_Mutation p.A10V 0.16 tolerated(0.14) benign(0.01) TCGA-CG-5723-01 8 110509434 110509434 T - PKHD1L1 Frame_Shift_Del p.P3513Qfs*2 0.17 TCGA-CG-5723-01 8 110588045 110588045 T A SYBU Missense_Mutation p.D361V 0.05 deleterious(0) probably_damaging(1) TCGA-CG-5723-01 8 113871489 113871489 G A CSMD3 Missense_Mutation p.T547M 0.25 tolerated(0.59) possibly_damaging(0.816) TCGA-CG-5723-01 8 11643587 11643587 T C NEIL2 Silent p.S268S 0.24 TCGA-CG-5723-01 8 118847717 118847717 G A EXT1 Missense_Mutation p.A377V 0.24 deleterious(0) probably_damaging(0.989) TCGA-CG-5723-01 8 121823613 121823613 G A SNTB1 Silent p.G157G 0.31 TCGA-CG-5723-01 8 123965008 123965008 C T ZHX2 Missense_Mutation p.R420C 0.24 deleterious(0) probably_damaging(0.999) TCGA-CG-5723-01 8 124371546 124371546 T C ATAD2 Missense_Mutation p.N433D 0.26 tolerated(1) benign(0.001) TCGA-CG-5723-01 8 125022838 125022838 T C FER1L6 Missense_Mutation p.Y569H 0.23 deleterious(0.05) probably_damaging(0.987) TCGA-CG-5723-01 8 125332355 125332355 A G TMEM65 Missense_Mutation p.M198T 0.14 deleterious(0.05) possibly_damaging(0.524) TCGA-CG-5723-01 8 125463124 125463124 C G TRMT12 5'UTR 0.19 TCGA-CG-5723-01 8 131226887 131226887 A - ASAP1 Frame_Shift_Del p.L107* 0.24 TCGA-CG-5723-01 8 134232963 134232963 G A WISP1 Silent p.P163P 0.15 TCGA-CG-5723-01 8 135614542 135614542 G A ZFAT Missense_Mutation p.R474C 0.13 deleterious(0) probably_damaging(0.998) TCGA-CG-5723-01 8 139263228 139263228 A C FAM135B Missense_Mutation p.V133G 0.27 deleterious(0) possibly_damaging(0.533) TCGA-CG-5723-01 8 142221700 142221700 T - SLC45A4 Frame_Shift_Del p.K746Nfs*13 0.24 TCGA-CG-5723-01 8 144643943 144643943 G A GSDMD Nonsense_Mutation p.W256* 0.25 TCGA-CG-5723-01 8 144688646 144688646 G A PYCRL Silent p.G192G 0.29 TCGA-CG-5723-01 8 144733328 144733328 G T ZNF623 Missense_Mutation p.R429M 0.04 deleterious(0) probably_damaging(0.99) TCGA-CG-5723-01 8 144990747 144990747 G A PLEC Silent p.R4551R 0.22 TCGA-CG-5723-01 8 145150876 145150876 C - CYC1 Frame_Shift_Del p.S93Afs*161 0.34 TCGA-CG-5723-01 8 145694141 145694141 G A KIFC2 Missense_Mutation p.G346D 0.24 tolerated(0.62) probably_damaging(1) TCGA-CG-5723-01 8 145771001 145771001 T C ARHGAP39 Missense_Mutation p.N718S 0.14 deleterious(0) benign(0.437) TCGA-CG-5723-01 8 145948088 145948088 T G ZNF251 Missense_Mutation p.K319N 0.24 deleterious(0) possibly_damaging(0.461) TCGA-CG-5723-01 8 146015267 146015267 G A RPL8 Silent p.G232G 0.25 TCGA-CG-5723-01 8 17409424 17409424 G A SLC7A2 Silent p.A368A 0.27 TCGA-CG-5723-01 8 17726129 17726129 G A FGL1 Missense_Mutation p.T236M 0.10 deleterious(0) probably_damaging(0.998) TCGA-CG-5723-01 8 18257712 18257712 T C NAT2 Missense_Mutation p.W67R 0.22 deleterious(0.02) probably_damaging(1) TCGA-CG-5723-01 8 19263296 19263296 T - CSGALNACT1 Frame_Shift_Del p.T532Hfs*43 0.23 TCGA-CG-5723-01 8 20070374 20070374 T C ATP6V1B2 Silent p.V295V 0.24 TCGA-CG-5723-01 8 21891687 21891687 A T NPM2 Missense_Mutation p.E144D 0.14 tolerated(0.33) benign(0.034) TCGA-CG-5723-01 8 21997010 21997010 C T REEP4 Silent p.E112E 0.27 TCGA-CG-5723-01 8 22140652 22140652 G A PIWIL2 Silent p.P177P 0.20 TCGA-CG-5723-01 8 22415705 22415705 G A SORBS3 Missense_Mutation p.D160N 0.06 deleterious(0.01) possibly_damaging(0.9) TCGA-CG-5723-01 8 22452098 22452098 T C PDLIM2 3'Flank 0.24 TCGA-CG-5723-01 8 25718687 25718687 C T EBF2 Missense_Mutation p.R407K 0.19 deleterious(0.04) possibly_damaging(0.815) TCGA-CG-5723-01 8 26623494 26623494 T C ADRA1A Intron 0.30 TCGA-CG-5723-01 8 27516154 27516154 C T SCARA3 Missense_Mutation p.A156V 0.06 deleterious(0.01) benign(0.164) TCGA-CG-5723-01 8 28409242 28409242 T - FZD3 Frame_Shift_Del p.H512Mfs*8 0.19 TCGA-CG-5723-01 8 3000078 3000078 G A CSMD1 Silent p.P2050P 0.20 TCGA-CG-5723-01 8 3045475 3045475 T C CSMD1 Missense_Mutation p.S1846G 0.33 benign(0.287) TCGA-CG-5723-01 8 30889719 30889719 G A PURG Missense_Mutation p.R194C 0.25 deleterious(0) probably_damaging(0.999) TCGA-CG-5723-01 8 3200920 3200920 T - CSMD1 Frame_Shift_Del p.N1176Mfs*6 0.10 TCGA-CG-5723-01 8 32505416 32505416 G A NRG1 Intron 0.20 TCGA-CG-5723-01 8 32617802 32617802 C T NRG1 Silent p.S387S 0.22 TCGA-CG-5723-01 8 37597886 37597886 C T ERLIN2 Silent p.G37G 0.22 TCGA-CG-5723-01 8 37688981 37688981 G A GPR124 Missense_Mutation p.E325K 0.27 tolerated(0.07) benign(0.386) TCGA-CG-5723-01 8 38851132 38851132 G A TM2D2 Silent p.C121C 0.19 TCGA-CG-5723-01 8 41791956 41791956 G T KAT6A Missense_Mutation p.P1261H 0.27 unknown(0) TCGA-CG-5723-01 8 42178357 42178357 C T IKBKB Silent p.D561D 0.21 TCGA-CG-5723-01 8 49647733 49647733 C T EFCAB1 5'UTR 0.26 TCGA-CG-5723-01 8 49647808 49647808 G A EFCAB1 5'Flank 0.08 TCGA-CG-5723-01 8 53569498 53569498 T - RB1CC1 Frame_Shift_Del p.K964Sfs*13 0.19 TCGA-CG-5723-01 8 53852765 53852765 C T NPBWR1 Missense_Mutation p.R100W 0.14 deleterious(0.01) possibly_damaging(0.638) TCGA-CG-5723-01 8 55372559 55372559 G C SOX17 3'UTR 0.08 TCGA-CG-5723-01 8 57358398 57358398 G A PENK Missense_Mutation p.R39C 0.37 deleterious(0.01) possibly_damaging(0.901) TCGA-CG-5723-01 8 57358505 57358505 C T PENK Missense_Mutation p.R3Q 0.50 tolerated_low_confidence(0.3) probably_damaging(0.988) TCGA-CG-5723-01 8 59409729 59409729 A C CYP7A1 Missense_Mutation p.I114M 0.24 tolerated(0.34) benign(0.035) TCGA-CG-5723-01 8 65509466 65509466 A - CYP7B1 Frame_Shift_Del p.F418Lfs*2 0.23 TCGA-CG-5723-01 8 66534566 66534566 G A ARMC1 Silent p.C69C 0.27 TCGA-CG-5723-01 8 67547088 67547088 C T VCPIP1 Missense_Mutation p.R1106Q 0.26 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-CG-5723-01 8 68396023 68396023 T C CPA6 Missense_Mutation p.N273S 0.23 deleterious(0) probably_damaging(0.999) TCGA-CG-5723-01 8 68942753 68942753 C T PREX2 Missense_Mutation p.R189W 0.23 deleterious(0.01) possibly_damaging(0.89) TCGA-CG-5723-01 8 72754665 72754665 T - MSC 3'UTR 0.26 TCGA-CG-5723-01 8 73480396 73480397 - A KCNB2 Frame_Shift_Ins p.E146Rfs*23 0.26 TCGA-CG-5723-01 8 73849351 73849351 C T KCNB2 Silent p.A587A 0.24 TCGA-CG-5723-01 8 73849869 73849869 C - KCNB2 Frame_Shift_Del p.S762Pfs*46 0.22 TCGA-CG-5723-01 8 75737662 75737662 C T PI15 Missense_Mutation p.R60C 0.20 deleterious(0.02) probably_damaging(0.996) TCGA-CG-5723-01 8 76471161 76471161 C T HNF4G Missense_Mutation p.L328F 0.27 deleterious(0) probably_damaging(0.982) TCGA-CG-5723-01 8 77765551 77765551 C A ZFHX4 Missense_Mutation p.P2132T 0.17 possibly_damaging(0.706) TCGA-CG-5723-01 8 95502202 95502202 C T KIAA1429 Missense_Mutation p.G1750D 0.22 deleterious(0.04) probably_damaging(0.976) TCGA-CG-5723-01 8 9567544 9567544 A - TNKS Frame_Shift_Del p.N555Ifs*5 0.16 TCGA-CG-5723-01 8 97156813 97156813 A G GDF6 Missense_Mutation p.V449A 0.23 deleterious(0) probably_damaging(1) TCGA-CG-5723-01 8 97270799 97270799 G A MTERFD1 Silent p.G40G 0.19 TCGA-CG-5723-01 9 100125964 100125964 C T CCDC180 Intron 0.33 TCGA-CG-5723-01 9 100245400 100245400 C T TDRD7 Silent p.S894S 0.26 TCGA-CG-5723-01 9 100353681 100353681 C T TMOD1 Missense_Mutation p.R327W 0.22 deleterious(0) probably_damaging(0.998) TCGA-CG-5723-01 9 101258740 101258740 G A GABBR2 Silent p.T229T 0.19 TCGA-CG-5723-01 9 101706337 101706337 C A COL15A1 5'UTR 0.17 TCGA-CG-5723-01 9 102590423 102590423 C T NR4A3 Silent p.P44P 0.25 TCGA-CG-5723-01 9 103111633 103111633 T - TEX10 Frame_Shift_Del p.R5Efs*10 0.17 TCGA-CG-5723-01 9 103204533 103204533 G A MSANTD3 Missense_Mutation p.V105I 0.22 tolerated(0.48) benign(0.001) TCGA-CG-5723-01 9 110062486 110062486 A - RAD23B Frame_Shift_Del p.K45Nfs*2 0.13 TCGA-CG-5723-01 9 111617246 111617246 C T ACTL7B Missense_Mutation p.C322Y 0.21 deleterious(0.02) possibly_damaging(0.899) TCGA-CG-5723-01 9 111617489 111617489 C T ACTL7B Missense_Mutation p.G241D 0.23 deleterious(0) probably_damaging(1) TCGA-CG-5723-01 9 112900030 112900030 G A PALM2-AKAP2 Missense_Mutation p.A736T 0.28 deleterious(0.04) probably_damaging(0.999) TCGA-CG-5723-01 9 113197545 113197545 C T SVEP1 Missense_Mutation p.D1622N 0.20 benign(0.081) TCGA-CG-5723-01 9 113228188 113228188 G A SVEP1 Silent p.T1093T 0.19 TCGA-CG-5723-01 9 116079151 116079151 A G WDR31 Silent p.L328L 0.24 TCGA-CG-5723-01 9 116171195 116171195 T - POLE3 Frame_Shift_Del p.T114Qfs*32 0.20 TCGA-CG-5723-01 9 116187629 116187629 A C C9orf43 Silent p.R291R 0.09 TCGA-CG-5723-01 9 116269753 116269753 C A RGS3 Nonsense_Mutation p.C424* 0.24 TCGA-CG-5723-01 9 116276899 116276899 G A RGS3 Missense_Mutation p.A547T 0.23 deleterious(0.01) benign(0.091) TCGA-CG-5723-01 9 116811442 116811442 G T ZNF618 Silent p.R527R 0.17 TCGA-CG-5723-01 9 116930239 116930239 C T COL27A1 Missense_Mutation p.T135M 0.25 unknown(0) TCGA-CG-5723-01 9 116930829 116930829 G A COL27A1 Missense_Mutation p.A332T 0.22 unknown(0) TCGA-CG-5723-01 9 117052381 117052381 G - COL27A1 Frame_Shift_Del p.V1419Sfs*148 0.33 TCGA-CG-5723-01 9 117085980 117085980 G A ORM1 Missense_Mutation p.R51Q 0.25 deleterious(0.04) possibly_damaging(0.474) TCGA-CG-5723-01 9 117139520 117139520 G A AKNA Silent p.V189V 0.25 TCGA-CG-5723-01 9 123165217 123165217 C T CDK5RAP2 Missense_Mutation p.R1725H 0.29 tolerated(0.32) benign(0.128) TCGA-CG-5723-01 9 123742388 123742388 C T C5 Missense_Mutation p.A1211T 0.22 tolerated(0.14) benign(0.012) TCGA-CG-5723-01 9 123914741 123914741 T - CNTRL Intron 0.19 TCGA-CG-5723-01 9 125289221 125289221 A C OR1N1 Missense_Mutation p.Y118D 0.15 deleterious(0) probably_damaging(0.998) TCGA-CG-5723-01 9 125424142 125424142 C T OR1L1 Missense_Mutation p.R50C 0.22 tolerated(0.21) benign(0.006) TCGA-CG-5723-01 9 126776328 126776328 A G LHX2 Missense_Mutation p.D70G 0.18 deleterious(0.02) benign(0.322) TCGA-CG-5723-01 9 127616498 127616498 C A WDR38 Silent p.A28A 0.23 TCGA-CG-5723-01 9 127911922 127911922 A - PPP6C 3'UTR 0.16 TCGA-CG-5723-01 9 128725361 128725361 A G PBX3 Missense_Mutation p.Y398C 0.22 deleterious(0) possibly_damaging(0.832) TCGA-CG-5723-01 9 130269612 130269612 C T FAM129B Missense_Mutation p.A585T 0.27 tolerated(0.63) benign(0.001) TCGA-CG-5723-01 9 130486431 130486431 A G TTC16 Missense_Mutation p.D302G 0.24 deleterious(0.01) probably_damaging(0.973) TCGA-CG-5723-01 9 13140138 13140138 T C MPDZ Missense_Mutation p.Q1284R 0.20 tolerated(0.18) benign(0.018) TCGA-CG-5723-01 9 131589411 131589411 G A C9orf114 Missense_Mutation p.P90S 0.15 tolerated(0.05) benign(0.098) TCGA-CG-5723-01 9 131847515 131847515 G A DOLPP1 Missense_Mutation p.G98R 0.25 deleterious(0) benign(0.114) TCGA-CG-5723-01 9 132637208 132637208 C T USP20 Silent p.N674N 0.19 TCGA-CG-5723-01 9 133760024 133760024 C - ABL1 Frame_Shift_Del p.R804Gfs*3 0.30 TCGA-CG-5723-01 9 133901719 133901719 C T LAMC3 Missense_Mutation p.R141C 0.34 deleterious(0) probably_damaging(1) TCGA-CG-5723-01 9 135102276 135102276 G A NTNG2 Missense_Mutation p.E300K 0.23 tolerated(0.65) benign(0.019) TCGA-CG-5723-01 9 135554690 135554691 - A GTF3C4 Frame_Shift_Ins p.I565Dfs*2 0.22 TCGA-CG-5723-01 9 135690055 135690055 T C AK8 Missense_Mutation p.I317V 0.24 tolerated(0.25) probably_damaging(0.998) TCGA-CG-5723-01 9 135906432 135906432 G A GTF3C5 Missense_Mutation p.A12T 0.37 tolerated_low_confidence(0.11) benign(0.023) TCGA-CG-5723-01 9 136219368 136219368 A C SURF1 Missense_Mutation p.H228Q 0.16 tolerated(0.07) possibly_damaging(0.722) TCGA-CG-5723-01 9 136262382 136262382 A G C9orf96 Missense_Mutation p.T320A 0.19 tolerated(0.34) benign(0.009) TCGA-CG-5723-01 9 136662911 136662911 T C VAV2 Missense_Mutation p.Y286C 0.07 deleterious(0) probably_damaging(1) TCGA-CG-5723-01 9 137591897 137591897 C T COL5A1 Silent p.Y140Y 0.21 TCGA-CG-5723-01 9 137804344 137804344 G T FCN1 Missense_Mutation p.L196M 0.31 deleterious(0) probably_damaging(0.999) TCGA-CG-5723-01 9 138011566 138011566 C T OLFM1 Missense_Mutation p.R316C 0.37 deleterious(0) probably_damaging(0.965) TCGA-CG-5723-01 9 139278455 139278455 G A SNAPC4 Missense_Mutation p.P484S 0.18 deleterious(0.01) probably_damaging(0.98) TCGA-CG-5723-01 9 139369409 139369412 CAGA - SEC16A Frame_Shift_Del p.S886Gfs*80 0.29 TCGA-CG-5723-01 9 139726288 139726288 C T RABL6 Missense_Mutation p.R192C 0.11 deleterious(0) probably_damaging(0.981) TCGA-CG-5723-01 9 139748023 139748023 C T MAMDC4 Nonsense_Mutation p.R119* 0.23 TCGA-CG-5723-01 9 139814907 139814907 C A TRAF2 Silent p.A300A 0.25 TCGA-CG-5723-01 9 139929124 139929124 G A C9orf139 Missense_Mutation p.R64K 0.19 tolerated_low_confidence(1) benign(0.14) TCGA-CG-5723-01 9 139929602 139929602 G T C9orf139 3'UTR 0.43 TCGA-CG-5723-01 9 140093439 140093441 CTT - TPRN In_Frame_Del p.K575del 0.26 TCGA-CG-5723-01 9 140130434 140130434 G A SLC34A3 Missense_Mutation p.A456T 0.20 tolerated(0.2) probably_damaging(0.975) TCGA-CG-5723-01 9 140130512 140130512 G A SLC34A3 Missense_Mutation p.A482T 0.19 deleterious(0.03) probably_damaging(0.99) TCGA-CG-5723-01 9 140147666 140147666 G A C9orf173 Silent p.A304A 0.33 TCGA-CG-5723-01 9 140356679 140356679 G - PNPLA7 Frame_Shift_Del p.I1200Sfs*148 0.24 TCGA-CG-5723-01 9 140481542 140481542 C - ZMYND19 Frame_Shift_Del p.G79Afs*14 0.23 TCGA-CG-5723-01 9 140508392 140508392 C G ARRDC1 Intron 0.16 TCGA-CG-5723-01 9 14674299 14674299 A G ZDHHC21 Missense_Mutation p.W14R 0.25 deleterious(0.01) possibly_damaging(0.782) TCGA-CG-5723-01 9 15171910 15171910 T - TTC39B 3'UTR 0.25 TCGA-CG-5723-01 9 17484293 17484293 G A CNTLN Missense_Mutation p.A1286T 0.20 tolerated(0.22) probably_damaging(0.983) TCGA-CG-5723-01 9 19058515 19058515 T G HAUS6 Missense_Mutation p.K750N 0.10 tolerated(0.15) benign(0.066) TCGA-CG-5723-01 9 20953057 20953057 A - FOCAD Frame_Shift_Del p.G1378Vfs*12 0.26 TCGA-CG-5723-01 9 2104016 2104016 C T SMARCA2 Missense_Mutation p.R1047W 0.21 possibly_damaging(0.689) TCGA-CG-5723-01 9 2820070 2820070 G A KIAA0020 Missense_Mutation p.A406V 0.22 deleterious(0.03) benign(0.109) TCGA-CG-5723-01 9 2831004 2831004 G A KIAA0020 Missense_Mutation p.A212V 0.33 deleterious(0.02) benign(0.028) TCGA-CG-5723-01 9 32450127 32450127 C T ACO1 3'UTR 0.30 TCGA-CG-5723-01 9 33167076 33167076 G A B4GALT1 Missense_Mutation p.A31V 0.24 tolerated(0.19) benign(0.004) TCGA-CG-5723-01 9 33442934 33442934 A - AQP3 Frame_Shift_Del p.F136Lfs*22 0.20 TCGA-CG-5723-01 9 33462740 33462740 T C NOL6 Silent p.A1121A 0.25 TCGA-CG-5723-01 9 34311229 34311229 T C KIF24 Missense_Mutation p.D39G 0.27 deleterious(0) probably_damaging(1) TCGA-CG-5723-01 9 35067913 35067913 G A VCP Missense_Mutation p.R93C 0.05 deleterious(0.02) benign(0.233) TCGA-CG-5723-01 9 35403768 35403768 C A UNC13B Missense_Mutation p.P1505H 0.29 deleterious(0) probably_damaging(0.995) TCGA-CG-5723-01 9 35555607 35555607 G A RUSC2 Silent p.P855P 0.29 TCGA-CG-5723-01 9 35563290 35563290 C T FAM166B Nonsense_Mutation p.W53* 0.28 TCGA-CG-5723-01 9 35609368 35609368 C T TESK1 Nonsense_Mutation p.Q504* 0.13 TCGA-CG-5723-01 9 37428512 37428512 C T GRHPR Silent p.L146L 0.24 TCGA-CG-5723-01 9 37746591 37746591 C T FRMPD1 Missense_Mutation p.A1521V 0.30 tolerated(0.48) benign(0.027) TCGA-CG-5723-01 9 40772691 40772691 T - ZNF658 Frame_Shift_Del p.T862Rfs*190 0.18 TCGA-CG-5723-01 9 43624517 43624518 - AT SPATA31A6 3'UTR 0.46 TCGA-CG-5723-01 9 5089751 5089751 G A JAK2 Silent p.K883K 0.29 TCGA-CG-5723-01 9 5753614 5753614 A - KIAA1432 Frame_Shift_Del p.K525Nfs*14 0.15 TCGA-CG-5723-01 9 6805770 6805770 G A KDM4C Missense_Mutation p.G106S 0.29 tolerated(0.06) benign(0.003) TCGA-CG-5723-01 9 6814672 6814672 G A KDM4C Missense_Mutation p.R121H 0.21 deleterious(0) probably_damaging(0.944) TCGA-CG-5723-01 9 71006490 71006490 G - PGM5 Frame_Shift_Del p.A248Pfs*7 0.14 TCGA-CG-5723-01 9 71628327 71628327 G A PRKACG Missense_Mutation p.L228F 0.19 deleterious(0.01) probably_damaging(0.988) TCGA-CG-5723-01 9 74329881 74329881 C A TMEM2 Missense_Mutation p.D854Y 0.16 deleterious(0) possibly_damaging(0.466) TCGA-CG-5723-01 9 75539031 75539031 T G ALDH1A1 Silent p.G217G 0.23 TCGA-CG-5723-01 9 79952237 79952237 G C VPS13A Missense_Mutation p.E2054D 0.30 tolerated(0.18) benign(0.02) TCGA-CG-5723-01 9 90252903 90252904 TT - DAPK1 Frame_Shift_Del p.L111Nfs*2 0.20 TCGA-CG-5723-01 9 91657048 91657048 G A SHC3 Missense_Mutation p.T418M 0.26 tolerated(0.11) benign(0.013) TCGA-CG-5723-01 9 91978832 91978834 TTC - SECISBP2 3'Flank 0.18 TCGA-CG-5723-01 9 91994251 91994251 C T SEMA4D Missense_Mutation p.V653I 0.22 tolerated(0.42) benign(0.018) TCGA-CG-5723-01 9 94495680 94495680 C A ROR2 Missense_Mutation p.D221Y 0.21 deleterious(0) probably_damaging(0.934) TCGA-CG-5723-01 9 95481241 95481241 G A BICD2 Silent p.G562G 0.21 TCGA-CG-5723-01 9 95481833 95481833 G A BICD2 Missense_Mutation p.T365M 0.22 deleterious(0.01) probably_damaging(0.95) TCGA-CG-5723-01 9 95993293 95993293 T C WNK2 Silent p.C326C 0.20 TCGA-CG-5723-01 9 95997109 95997109 G A WNK2 Silent p.A365A 0.13 TCGA-CG-5723-01 9 96261170 96261170 T C FAM120A Splice_Site p.X344_splice 0.19 TCGA-CG-5723-01 9 96438043 96438043 C T PHF2 Missense_Mutation p.A935V 0.26 deleterious(0) unknown(0) TCGA-CG-5723-01 9 98268780 98268780 G A PTCH1 Silent p.F101F 0.25 TCGA-CG-5723-01 9 99285991 99285991 C A CDC14B Silent p.T321T 0.32 TCGA-CG-5723-01 X 100088274 100088274 G A CSTF2 Missense_Mutation p.R438H 0.52 tolerated_low_confidence(0.1) probably_damaging(0.976) TCGA-CG-5723-01 X 100098874 100098874 C T NOX1 3'UTR 0.40 TCGA-CG-5723-01 X 100292967 100292967 A G TRMT2B Missense_Mutation p.V126A 0.44 tolerated(0.83) benign(0.001) TCGA-CG-5723-01 X 101857120 101857120 C T ARMCX5 Silent p.G17G 0.41 TCGA-CG-5723-01 X 101909665 101909665 C A GPRASP1 Missense_Mutation p.P275H 0.09 deleterious(0) possibly_damaging(0.707) TCGA-CG-5723-01 X 102529176 102529176 G A TCEAL5 Missense_Mutation p.R106C 0.48 tolerated(0.08) benign(0.329) TCGA-CG-5723-01 X 102564733 102564733 C T BEX2 Missense_Mutation p.V90I 0.44 tolerated(0.07) benign(0.103) TCGA-CG-5723-01 X 106069300 106069300 T - TBC1D8B Frame_Shift_Del p.F291Lfs*9 0.38 TCGA-CG-5723-01 X 106358698 106358698 C T RBM41 Missense_Mutation p.C136Y 0.35 deleterious(0.01) benign(0.11) TCGA-CG-5723-01 X 106957913 106957913 G A TSC22D3 Nonsense_Mutation p.R147* 0.49 TCGA-CG-5723-01 X 107977803 107977803 C - IRS4 Frame_Shift_Del p.G591Afs*20 0.40 TCGA-CG-5723-01 X 108868075 108868075 C T KCNE1L Missense_Mutation p.A59T 0.29 tolerated(0.05) benign(0.007) TCGA-CG-5723-01 X 109697380 109697380 T G RGAG1 Missense_Mutation p.F1179V 0.34 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CG-5723-01 X 11133052 11133052 T C HCCS Silent p.C66C 0.48 TCGA-CG-5723-01 X 114540853 114540853 T A LUZP4 Missense_Mutation p.N142K 0.49 tolerated(0.17) benign(0.139) TCGA-CG-5723-01 X 117043783 117043783 G A KLHL13 Nonsense_Mutation p.R286* 0.47 TCGA-CG-5723-01 X 117532356 117532356 C T WDR44 Silent p.D399D 0.42 TCGA-CG-5723-01 X 118587102 118587102 C T SLC25A43 3'UTR 0.35 TCGA-CG-5723-01 X 118975216 118975217 CA - UPF3B Frame_Shift_Del p.M210Kfs*55 0.32 TCGA-CG-5723-01 X 119070803 119070803 A - NKAP Intron 0.33 TCGA-CG-5723-01 X 125299494 125299494 G A DCAF12L2 Silent p.D138D 0.48 TCGA-CG-5723-01 X 129149743 129149744 - C BCORL1 Frame_Shift_Ins p.Q1001Pfs*5 0.44 TCGA-CG-5723-01 X 129190011 129190011 C - BCORL1 Frame_Shift_Del p.P1681Qfs*20 0.56 TCGA-CG-5723-01 X 129215409 129215409 A G ELF4 5'UTR 0.33 TCGA-CG-5723-01 X 132091108 132091108 G A HS6ST2 Silent p.G225G 0.40 TCGA-CG-5723-01 X 135956553 135956553 A T RBMX Missense_Mutation p.S308R 0.36 tolerated(0.16) benign(0.01) TCGA-CG-5723-01 X 137717759 137717759 T C FGF13 Missense_Mutation p.T164A 0.42 tolerated(0.14) possibly_damaging(0.622) TCGA-CG-5723-01 X 14027102 14027102 T C GEMIN8 Missense_Mutation p.Q220R 0.06 deleterious(0) probably_damaging(0.992) TCGA-CG-5723-01 X 147019098 147019098 T C FMR1 Silent p.P368P 0.39 TCGA-CG-5723-01 X 1499988 1499988 C T IL3RA Silent p.N351N 0.24 TCGA-CG-5723-01 X 150842425 150842425 C - PASD1 Frame_Shift_Del p.V650* 0.37 TCGA-CG-5723-01 X 150869231 150869231 G A PRRG3 Missense_Mutation p.S141N 0.46 tolerated(0.18) benign(0.285) TCGA-CG-5723-01 X 152135749 152135749 A C ZNF185 Missense_Mutation p.K644T 0.48 deleterious(0) probably_damaging(0.99) TCGA-CG-5723-01 X 1522430 1522430 T G ASMTL Intron 0.14 TCGA-CG-5723-01 X 153209078 153209078 G A RENBP Nonsense_Mutation p.Q128* 0.19 TCGA-CG-5723-01 X 153218045 153218045 G T HCFC1 Missense_Mutation p.A1621D 0.38 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-CG-5723-01 X 153591075 153591075 G A FLNA Silent p.A786A 0.55 TCGA-CG-5723-01 X 1734092 1734092 G T ASMT 5'UTR 0.44 TCGA-CG-5723-01 X 21896785 21896785 A G MBTPS2 Silent p.G412G 0.45 TCGA-CG-5723-01 X 24760164 24760164 T C POLA1 Silent p.L792L 0.52 TCGA-CG-5723-01 X 3228890 3228890 C T MXRA5 Missense_Mutation p.V2452M 0.45 deleterious(0) probably_damaging(0.996) TCGA-CG-5723-01 X 37587584 37587585 - A XK Frame_Shift_Ins p.P404Tfs*3 0.45 TCGA-CG-5723-01 X 38271179 38271179 T G OTC Missense_Mutation p.V311G 0.54 deleterious(0) probably_damaging(0.999) TCGA-CG-5723-01 X 40496296 40496296 A T CXorf38 Missense_Mutation p.I195N 0.42 deleterious(0) possibly_damaging(0.898) TCGA-CG-5723-01 X 47044527 47044527 C A RBM10 Missense_Mutation p.P675H 0.44 deleterious(0) probably_damaging(0.945) TCGA-CG-5723-01 X 49955569 49955569 G - AKAP4 3'UTR 0.41 TCGA-CG-5723-01 X 50053307 50053307 T C CCNB3 Missense_Mutation p.L713S 0.44 deleterious(0) probably_damaging(0.972) TCGA-CG-5723-01 X 50054263 50054263 G A CCNB3 Missense_Mutation p.A1032T 0.47 tolerated(0.28) possibly_damaging(0.483) TCGA-CG-5723-01 X 50130583 50130583 T C DGKK RNA 0.60 TCGA-CG-5723-01 X 53172598 53172598 G C LINC01155 RNA 0.78 TCGA-CG-5723-01 X 53246393 53246393 G - KDM5C Frame_Shift_Del p.L197Yfs*37 0.47 TCGA-CG-5723-01 X 53586338 53586338 T C HUWE1 Missense_Mutation p.Q2631R 0.34 benign(0.069) TCGA-CG-5723-01 X 54228568 54228568 T - WNK3 Frame_Shift_Del p.M1645Cfs*18 0.30 TCGA-CG-5723-01 X 57162586 57162586 C A SPIN2A Missense_Mutation p.G149W 0.38 deleterious(0) probably_damaging(1) TCGA-CG-5723-01 X 64139884 64139885 GT - ZC4H2 Intron 0.29 TCGA-CG-5723-01 X 65413405 65413405 C T HEPH Nonsense_Mutation p.R486* 0.44 TCGA-CG-5723-01 X 66943842 66943842 T - AR 3'UTR 0.50 TCGA-CG-5723-01 X 71359790 71359790 C T NHSL2 Missense_Mutation p.R798W 0.52 deleterious(0) probably_damaging(0.995) TCGA-CG-5723-01 X 73040758 73040758 C T XIST RNA 0.40 TCGA-CG-5723-01 X 79699146 79699146 C - FAM46D Frame_Shift_Del p.V372Lfs*17 0.36 TCGA-CG-5723-01 X 92927070 92927070 C T NAP1L3 Missense_Mutation p.V412I 0.33 deleterious(0.03) possibly_damaging(0.739) TCGA-CG-5723-01 Y 22741514 22741514 C T EIF1AY Missense_Mutation p.R13C 0.38 deleterious(0.04) unknown(0) TCGA-CG-5724-01 10 11894067 11894067 C T PROSER2 5'UTR 0.33 TCGA-CG-5724-01 10 126172767 126172767 C A LHPP Missense_Mutation p.A62E 0.09 tolerated(1) benign(0.001) TCGA-CG-5724-01 11 55653609 55653610 - A TRIM51 Frame_Shift_Ins p.M144Nfs*10 0.39 TCGA-CG-5724-01 11 66241318 66241318 T - PELI3 Frame_Shift_Del p.V255Sfs*61 0.39 TCGA-CG-5724-01 11 89431668 89431668 A C FOLH1B RNA 0.24 TCGA-CG-5724-01 11 92086454 92086454 T C FAT3 Silent p.G392G 0.64 TCGA-CG-5724-01 11 94731169 94731169 T C KDM4D Silent p.T211T 0.68 TCGA-CG-5724-01 11 9810669 9810669 G A SBF2 Missense_Mutation p.T1640I 0.61 deleterious(0.01) benign(0.197) TCGA-CG-5724-01 12 112685929 112685929 G A HECTD4 Missense_Mutation p.A1251V 0.06 benign(0.08) TCGA-CG-5724-01 12 122091042 122091042 C A MORN3 Missense_Mutation p.G196V 0.06 deleterious(0) probably_damaging(0.998) TCGA-CG-5724-01 12 31435569 31435569 G T FAM60A 3'UTR 0.07 TCGA-CG-5724-01 12 42858814 42858814 C T PRICKLE1 Missense_Mutation p.R341Q 0.44 tolerated(0.25) benign(0.046) TCGA-CG-5724-01 12 44148392 44148392 A T PUS7L Missense_Mutation p.F219L 0.19 tolerated(0.12) benign(0.02) TCGA-CG-5724-01 12 50156859 50156859 G T TMBIM6 3'UTR 0.22 TCGA-CG-5724-01 12 50821557 50821557 A G LARP4 Missense_Mutation p.K11E 0.45 deleterious(0) probably_damaging(0.998) TCGA-CG-5724-01 12 52964594 52964594 G A KRT74 Silent p.H289H 0.14 TCGA-CG-5724-01 12 86373791 86373791 T G MGAT4C Missense_Mutation p.K238T 0.47 deleterious(0.01) possibly_damaging(0.799) TCGA-CG-5724-01 12 86383296 86383296 A C MGAT4C Missense_Mutation p.I10S 0.23 tolerated_low_confidence(0.38) benign(0) TCGA-CG-5724-01 13 36700071 36700071 G A DCLK1 Silent p.Y68Y 0.11 TCGA-CG-5724-01 13 78492471 78492471 A G EDNRB Missense_Mutation p.S170P 0.18 tolerated(0.25) benign(0.007) TCGA-CG-5724-01 14 55655676 55655676 C T DLGAP5 Silent p.K74K 0.45 TCGA-CG-5724-01 14 89878584 89878584 C T FOXN3 Silent p.S79S 0.23 TCGA-CG-5724-01 14 93176169 93176169 C T LGMN Missense_Mutation p.A290T 0.41 tolerated(0.36) benign(0.002) TCGA-CG-5724-01 14 94088466 94088466 C T UNC79 Silent p.S1452S 0.23 TCGA-CG-5724-01 15 101445802 101445802 C T ALDH1A3 Silent p.C381C 0.51 TCGA-CG-5724-01 15 23445548 23445548 T A AC100757.1 3'Flank 0.21 TCGA-CG-5724-01 15 25349927 25349927 T A SNORD116-30 5'Flank 0.66 TCGA-CG-5724-01 15 75760969 75760969 C T PTPN9 3'UTR 0.75 TCGA-CG-5724-01 15 75974714 75974714 G A CSPG4 Missense_Mutation p.R1624W 0.60 deleterious(0) possibly_damaging(0.677) TCGA-CG-5724-01 15 90617399 90617399 C T ZNF710 Silent p.L568L 0.42 TCGA-CG-5724-01 15 93444414 93444414 G A CHD2 5'UTR 0.64 TCGA-CG-5724-01 16 30536081 30536081 G A ZNF768 Silent p.P460P 0.32 TCGA-CG-5724-01 16 65016134 65016134 T G CDH11 Missense_Mutation p.K357T 0.66 deleterious(0.01) benign(0.223) TCGA-CG-5724-01 16 67961298 67961298 G C PSKH1 Missense_Mutation p.R343P 0.67 deleterious(0) probably_damaging(0.999) TCGA-CG-5724-01 16 68325560 68325560 T G SLC7A6 Missense_Mutation p.S340A 0.32 deleterious(0.04) possibly_damaging(0.791) TCGA-CG-5724-01 17 2604521 2604521 G T CLUH Missense_Mutation p.P275H 0.23 tolerated(0.13) benign(0.127) TCGA-CG-5724-01 17 33802111 33802111 G A SLFN12L Missense_Mutation p.S533L 0.35 tolerated(0.73) benign(0.003) TCGA-CG-5724-01 17 37650864 37650864 G A CDK12 Missense_Mutation p.R779H 0.16 probably_damaging(0.999) TCGA-CG-5724-01 17 37829375 37829375 C T PGAP3 Silent p.P276P 0.50 TCGA-CG-5724-01 17 43481878 43481878 G - ARHGAP27 Frame_Shift_Del p.P108Lfs*44 0.18 TCGA-CG-5724-01 17 48462540 48462540 G A LRRC59 Silent p.A205A 0.19 TCGA-CG-5724-01 17 7258584 7258584 C T TMEM95 Missense_Mutation p.R21C 0.51 deleterious(0) possibly_damaging(0.835) TCGA-CG-5724-01 17 74081411 74081411 G A EXOC7 Nonsense_Mutation p.Q617* 0.44 TCGA-CG-5724-01 17 75196749 75196749 G A SEC14L1 Missense_Mutation p.D335N 0.39 deleterious(0) probably_damaging(0.999) TCGA-CG-5724-01 18 30260165 30260165 G A KLHL14 Missense_Mutation p.R519C 0.52 deleterious(0) probably_damaging(0.973) TCGA-CG-5724-01 18 30847015 30847015 T G CCDC178 Missense_Mutation p.K425T 0.29 deleterious(0.02) probably_damaging(0.985) TCGA-CG-5724-01 18 31538236 31538236 G A NOL4 Silent p.D401D 0.24 TCGA-CG-5724-01 18 32621719 32621719 C A MAPRE2 Intron 0.54 TCGA-CG-5724-01 18 43843012 43843012 T C C18orf25 Silent p.T381T 0.70 TCGA-CG-5724-01 18 50731602 50731602 A G DCC Silent p.P530P 0.55 TCGA-CG-5724-01 18 8113545 8113545 T G PTPRM Missense_Mutation p.L640V 0.32 tolerated(0.59) benign(0.051) TCGA-CG-5724-01 19 19349171 19349171 C T NCAN Silent p.S1120S 0.65 TCGA-CG-5724-01 19 37314605 37314605 C T ZNF790 Missense_Mutation p.V33M 0.13 deleterious(0.05) probably_damaging(0.998) TCGA-CG-5724-01 19 38983186 38983186 C T RYR1 Missense_Mutation p.R2062C 0.07 benign(0.34) TCGA-CG-5724-01 19 4816472 4816472 T G TICAM1 Missense_Mutation p.T640P 0.38 tolerated(0.24) possibly_damaging(0.642) TCGA-CG-5724-01 19 48718604 48718606 AGG - CARD8 In_Frame_Del p.P447del 0.09 TCGA-CG-5724-01 19 52569312 52569312 T A ZNF841 Missense_Mutation p.D608V 0.13 tolerated(0.74) benign(0.047) TCGA-CG-5724-01 19 9010689 9010689 A C MUC16 Missense_Mutation p.L12991R 0.58 possibly_damaging(0.53) TCGA-CG-5724-01 1 114201842 114201842 A G MAGI3 Missense_Mutation p.K924E 0.23 deleterious(0) probably_damaging(0.999) TCGA-CG-5724-01 1 146408168 146408168 G A NBPF12 Splice_Site p.X601_splice 0.55 TCGA-CG-5724-01 1 150936523 150936523 A G SETDB1 Missense_Mutation p.D1241G 0.31 deleterious(0) probably_damaging(0.997) TCGA-CG-5724-01 1 151847259 151847259 G A THEM4 3'UTR 0.21 TCGA-CG-5724-01 1 17084545 17084545 G T MST1L RNA 0.11 TCGA-CG-5724-01 1 197059184 197059184 C T ASPM Missense_Mutation p.C3287Y 0.59 deleterious(0) probably_damaging(0.999) TCGA-CG-5724-01 1 207243623 207243623 A C PFKFB2 Splice_Site p.X365_splice 0.73 TCGA-CG-5724-01 1 213415558 213415558 G A RPS6KC1 Missense_Mutation p.M913I 0.62 tolerated(0.29) probably_damaging(0.949) TCGA-CG-5724-01 1 44467189 44467189 C T SLC6A9 Missense_Mutation p.R431H 0.43 tolerated(0.05) benign(0.024) TCGA-CG-5724-01 1 52260202 52260202 C T NRD1 Missense_Mutation p.C974Y 0.59 deleterious(0.01) probably_damaging(0.934) TCGA-CG-5724-01 1 70728369 70728369 C T ANKRD13C 3'UTR 0.25 TCGA-CG-5724-01 20 18005276 18005276 C T OVOL2 3'UTR 0.44 TCGA-CG-5724-01 21 34876432 34876432 C A GART Nonstop_Mutation p.*1011Lext*33 0.32 TCGA-CG-5724-01 21 41450635 41450635 C T DSCAM Missense_Mutation p.A1564T 0.25 tolerated(0.17) possibly_damaging(0.696) TCGA-CG-5724-01 22 16278052 16278052 A C POTEH Intron 0.11 TCGA-CG-5724-01 2 131522305 131522305 T C AMER3 3'UTR 0.20 TCGA-CG-5724-01 2 141625236 141625236 T G LRP1B Missense_Mutation p.Q1501P 0.54 benign(0.003) TCGA-CG-5724-01 2 1488506 1488506 G A TPO Missense_Mutation p.G493S 0.68 deleterious(0) probably_damaging(0.99) TCGA-CG-5724-01 2 160176909 160176909 A G BAZ2B Missense_Mutation p.F2125S 0.55 probably_damaging(1) TCGA-CG-5724-01 2 188210976 188210976 A C CALCRL Missense_Mutation p.L441V 0.55 tolerated(0.14) benign(0.08) TCGA-CG-5724-01 2 21229171 21229171 G C APOB Silent p.S3523S 0.23 TCGA-CG-5724-01 2 237405873 237405873 A T IQCA1 Missense_Mutation p.M90K 0.44 deleterious(0) probably_damaging(0.943) TCGA-CG-5724-01 2 238449573 238449573 C G MLPH Silent p.A473A 0.80 TCGA-CG-5724-01 2 70933534 70933534 C T ADD2 Missense_Mutation p.E3K 0.67 tolerated(0.46) benign(0.012) TCGA-CG-5724-01 2 74867167 74867167 A G M1AP Missense_Mutation p.F79S 0.50 deleterious(0) probably_damaging(0.999) TCGA-CG-5724-01 3 133099271 133099271 C T TMEM108 Missense_Mutation p.T239I 0.34 deleterious_low_confidence(0.02) possibly_damaging(0.648) TCGA-CG-5724-01 3 151056447 151056447 G A P2RY12 Missense_Mutation p.L63F 0.71 deleterious(0) probably_damaging(0.998) TCGA-CG-5724-01 3 15613246 15613246 G A HACL1 Nonsense_Mutation p.Q342* 0.13 TCGA-CG-5724-01 3 178785396 178785396 C T ZMAT3 Missense_Mutation p.G49R 0.66 tolerated(0.82) benign(0.027) TCGA-CG-5724-01 3 27216205 27216205 G A NEK10 Silent p.D875D 0.33 TCGA-CG-5724-01 3 32525444 32525444 C A CMTM6 3'UTR 0.27 TCGA-CG-5724-01 3 42733380 42733380 C T KLHL40 Silent p.N587N 0.28 TCGA-CG-5724-01 4 101109017 101109017 A C DDIT4L Silent p.T133T 0.19 TCGA-CG-5724-01 4 122853995 122853995 C T TRPC3 Missense_Mutation p.V140I 0.33 tolerated(0.38) benign(0.376) TCGA-CG-5724-01 4 177608362 177608362 T C VEGFC Missense_Mutation p.K375R 0.41 tolerated(1) benign(0.023) TCGA-CG-5724-01 4 3317869 3317869 C T RGS12 5'UTR 0.39 TCGA-CG-5724-01 4 68964625 68964625 A C TMPRSS11F Missense_Mutation p.V48G 0.39 deleterious(0) probably_damaging(0.996) TCGA-CG-5724-01 4 69197837 69197837 G C YTHDC1 Missense_Mutation p.S369C 0.36 deleterious(0) probably_damaging(0.93) TCGA-CG-5724-01 4 7043264 7043264 C T CCDC96 Missense_Mutation p.E468K 0.43 deleterious(0) probably_damaging(0.99) TCGA-CG-5724-01 4 7795508 7795508 C T AFAP1 Missense_Mutation p.A438T 0.16 deleterious(0.01) possibly_damaging(0.61) TCGA-CG-5724-01 5 140209731 140209731 C T PCDHA6 Silent p.G685G 0.26 TCGA-CG-5724-01 5 140242291 140242291 G A AC005609.1 3'UTR 0.17 TCGA-CG-5724-01 5 140735929 140735929 G A PCDHGA4 Missense_Mutation p.D388N 0.23 tolerated_low_confidence(0.38) benign(0.029) TCGA-CG-5724-01 5 140755518 140755518 C T PCDHGA6 Missense_Mutation p.T623M 0.25 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-CG-5724-01 5 140792993 140792998 GCAGCG - PCDHGA10 In_Frame_Del p.G86_S87del 0.36 TCGA-CG-5724-01 5 17354528 17354528 G A CTD-2139B15.2 RNA 0.40 TCGA-CG-5724-01 5 24537713 24537713 A G CDH10 Missense_Mutation p.L101P 0.35 deleterious(0) probably_damaging(0.998) TCGA-CG-5724-01 5 33549454 33549454 C T ADAMTS12 Missense_Mutation p.R1387H 0.36 deleterious(0) probably_damaging(0.995) TCGA-CG-5724-01 5 60448836 60448840 AAAAG - NDUFAF2 3'UTR 0.36 TCGA-CG-5724-01 5 7698445 7698445 A G ADCY2 Missense_Mutation p.K356R 0.18 tolerated(0.93) benign(0.026) TCGA-CG-5724-01 5 90012394 90012394 G A GPR98 Missense_Mutation p.A3099T 0.21 probably_damaging(0.956) TCGA-CG-5724-01 6 118028340 118028347 GTGTGTGC - NUS1 3'UTR 0.53 TCGA-CG-5724-01 6 132938378 132938378 G A TAAR2 Missense_Mutation p.R323C 0.51 deleterious(0.02) possibly_damaging(0.8) TCGA-CG-5724-01 6 152485429 152485429 C T SYNE1 Missense_Mutation p.V7887M 0.39 probably_damaging(0.992) TCGA-CG-5724-01 6 152711423 152711423 G A SYNE1 Silent p.H2723H 0.21 TCGA-CG-5724-01 6 27798960 27798960 C A HIST1H4K 3'UTR 0.42 TCGA-CG-5724-01 6 30675783 30675783 T C MDC1 Missense_Mutation p.D858G 0.37 tolerated(0.05) benign(0.002) TCGA-CG-5724-01 6 32095981 32095981 C T ATF6B Missense_Mutation p.A2T 0.24 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-CG-5724-01 6 44197722 44197722 G A SLC29A1 Silent p.K131K 0.35 TCGA-CG-5724-01 6 47547178 47547178 C T CD2AP Missense_Mutation p.P321S 0.22 deleterious(0) probably_damaging(1) TCGA-CG-5724-01 6 51637574 51637574 T G PKHD1 Missense_Mutation p.K2856N 0.29 deleterious(0.03) benign(0.443) TCGA-CG-5724-01 6 53989433 53989433 G C MLIP Missense_Mutation p.E128Q 0.26 deleterious(0) probably_damaging(0.997) TCGA-CG-5724-01 6 564037 564037 C T EXOC2 Silent p.A595A 0.16 TCGA-CG-5724-01 6 86238069 86238069 C T SNX14 Missense_Mutation p.D636N 0.29 deleterious(0.03) probably_damaging(0.998) TCGA-CG-5724-01 7 29519880 29519880 T G CHN2 Intron 0.38 TCGA-CG-5724-01 7 39612376 39612376 G A YAE1D1 3'UTR 0.44 TCGA-CG-5724-01 7 88965033 88965033 T G ZNF804B Missense_Mutation p.S913A 0.25 tolerated(0.69) benign(0.021) TCGA-CG-5724-01 7 94057073 94057073 A C COL1A2 Missense_Mutation p.E1134D 0.47 unknown(0) TCGA-CG-5724-01 7 98994334 98994334 G C PDAP1 Missense_Mutation p.R173G 0.25 tolerated_low_confidence(0.24) benign(0) TCGA-CG-5724-01 8 10583429 10583429 C T SOX7 Missense_Mutation p.R381H 0.24 deleterious(0.03) probably_damaging(0.998) TCGA-CG-5724-01 8 121219265 121219265 C A COL14A1 Missense_Mutation p.H375N 0.25 tolerated(0.09) benign(0.297) TCGA-CG-5724-01 8 134042185 134042185 C T TG Missense_Mutation p.R2386C 0.60 deleterious(0) probably_damaging(0.998) TCGA-CG-5724-01 8 144696357 144696357 G A TSTA3 Missense_Mutation p.R214W 0.68 deleterious(0) probably_damaging(0.93) TCGA-CG-5724-01 8 19192367 19192367 G A SH2D4A Missense_Mutation p.R171Q 0.38 tolerated(1) benign(0) TCGA-CG-5724-01 8 2820151 2820151 G A CSMD1 Silent p.C3155C 0.38 TCGA-CG-5724-01 8 3245020 3245020 G A CSMD1 Silent p.C926C 0.30 TCGA-CG-5724-01 8 3253803 3253803 A C CSMD1 Missense_Mutation p.F836V 0.40 probably_damaging(0.999) TCGA-CG-5724-01 8 68165687 68165687 C A ARFGEF1 Missense_Mutation p.Q899H 0.73 tolerated(0.11) benign(0.002) TCGA-CG-5724-01 8 69104587 69104587 C T PREX2 Silent p.N1477N 0.57 TCGA-CG-5724-01 8 77765163 77765163 G A ZFHX4 Silent p.T2002T 0.72 TCGA-CG-5724-01 8 97620628 97620628 C T SDC2 Silent p.A124A 0.65 TCGA-CG-5724-01 9 101589068 101589068 G A GALNT12 Silent p.S192S 0.46 TCGA-CG-5724-01 9 104187255 104187255 C A ALDOB Missense_Mutation p.C290F 0.06 tolerated(0.25) benign(0.041) TCGA-CG-5724-01 9 115216406 115216406 A G HSDL2 Missense_Mutation p.K327E 0.51 tolerated(0.06) benign(0.398) TCGA-CG-5724-01 9 120475218 120475218 A C TLR4 Missense_Mutation p.K271T 0.71 tolerated(0.43) benign(0.012) TCGA-CG-5724-01 9 125486451 125486452 - T OR1L4 Frame_Shift_Ins p.L64Sfs*18 0.17 TCGA-CG-5724-01 9 16437105 16437105 A T BNC2 Missense_Mutation p.Y363N 0.67 tolerated(0.25) benign(0.091) TCGA-CG-5724-01 9 19331981 19331981 A G DENND4C Missense_Mutation p.I753M 0.34 tolerated(0.13) probably_damaging(0.981) TCGA-CG-5724-01 9 6460623 6460623 G A UHRF2 Missense_Mutation p.R232Q 0.49 deleterious(0) probably_damaging(0.99) TCGA-CG-5724-01 9 72746492 72746492 A G MAMDC2 Missense_Mutation p.I320V 0.72 tolerated(0.13) probably_damaging(0.997) TCGA-CG-5724-01 9 80336110 80336110 C T GNAQ 3'UTR 0.62 TCGA-CG-5724-01 X 106070658 106070658 C T TBC1D8B Intron 0.26 TCGA-CG-5724-01 X 39932171 39932171 G A BCOR Nonsense_Mutation p.R810* 0.66 TCGA-CG-5725-01 10 104416942 104416943 - AGTG TRIM8 Frame_Shift_Ins p.P498Sfs*30 0.61 TCGA-CG-5725-01 10 12291586 12291586 C T CDC123 Missense_Mutation p.P285S 0.08 deleterious(0.01) probably_damaging(0.993) TCGA-CG-5725-01 10 27529251 27529252 - C ACBD5 Frame_Shift_Ins p.N60Efs*9 0.28 TCGA-CG-5725-01 10 35930230 35930237 CACAGCGG - FZD8 Frame_Shift_Del p.P41* 0.41 TCGA-CG-5725-01 10 43294033 43294033 G A BMS1 Missense_Mutation p.R736K 0.46 tolerated(0.73) benign(0.005) TCGA-CG-5725-01 10 89711879 89711880 - A PTEN Frame_Shift_Ins p.T167Nfs*13 0.39 TCGA-CG-5725-01 10 91099105 91099105 A C IFIT3 Missense_Mutation p.E231D 0.73 deleterious(0.04) benign(0.006) TCGA-CG-5725-01 10 98031175 98031184 AGACACGAAT - BLNK 5'UTR 0.77 TCGA-CG-5725-01 11 3381028 3381028 C A ZNF195 Nonsense_Mutation p.E404* 0.78 TCGA-CG-5725-01 11 47183053 47183053 C G C11orf49 Missense_Mutation p.A293G 0.37 tolerated_low_confidence(0.46) benign(0.234) TCGA-CG-5725-01 11 47183076 47183076 C T C11orf49 Missense_Mutation p.P301S 0.33 tolerated_low_confidence(0.33) benign(0.015) TCGA-CG-5725-01 11 47183225 47183225 C T C11orf49 3'UTR 0.36 TCGA-CG-5725-01 11 47183230 47183230 C A C11orf49 3'UTR 0.29 TCGA-CG-5725-01 11 47510448 47510451 CCAT - CELF1 Frame_Shift_Del p.Y66Lfs*9 0.36 TCGA-CG-5725-01 11 51412276 51412276 G A OR4A5 Silent p.N40N 0.43 TCGA-CG-5725-01 11 5274499 5274499 C A HBG2 3'UTR 0.74 TCGA-CG-5725-01 11 56237947 56237947 C A OR5M3 Missense_Mutation p.E9D 0.09 deleterious(0.04) benign(0.049) TCGA-CG-5725-01 11 57243814 57243815 - CT RTN4RL2 Frame_Shift_Ins p.Y233Sfs*55 0.45 TCGA-CG-5725-01 11 62446163 62446165 AGT - UBXN1 In_Frame_Del p.D37_W38delinsG 0.42 TCGA-CG-5725-01 11 64514700 64514704 CATGG - PYGM Frame_Shift_Del p.H768Qfs*4 0.33 TCGA-CG-5725-01 11 65268390 65268402 TTTTTCAGGCTTA - MALAT1 RNA 0.47 TCGA-CG-5725-01 11 65362982 65362983 - GCAG KCNK7 Frame_Shift_Ins p.R88Lfs*172 0.39 TCGA-CG-5725-01 11 65480413 65480414 - G KAT5 Frame_Shift_Ins p.V91Gfs*4 0.31 TCGA-CG-5725-01 12 109637263 109637267 CAGTC - ACACB Frame_Shift_Del p.V896Efs*20 0.85 TCGA-CG-5725-01 12 57970599 57970599 C A KIF5A Missense_Mutation p.L752M 0.37 deleterious(0.03) probably_damaging(0.91) TCGA-CG-5725-01 13 25840027 25840029 ATT - MTMR6 In_Frame_Del p.I174del 0.08 TCGA-CG-5725-01 13 86370044 86370044 A T SLITRK6 Nonsense_Mutation p.Y200* 0.21 TCGA-CG-5725-01 13 86370045 86370045 T G SLITRK6 Missense_Mutation p.Y200S 0.21 deleterious(0) probably_damaging(0.999) TCGA-CG-5725-01 14 100793646 100793646 C T SLC25A47 Missense_Mutation p.P89L 0.45 tolerated(0.31) benign(0.027) TCGA-CG-5725-01 14 75469676 75469692 AAGGCAGCTACCTTAAA - EIF2B2 5'UTR 0.64 TCGA-CG-5725-01 14 91247181 91247195 CTTCTTTATAATCAC - TTC7B In_Frame_Del p.G111_E115del 0.36 TCGA-CG-5725-01 14 92625468 92625468 G A CPSF2 Missense_Mutation p.D655N 0.37 tolerated(0.29) benign(0.005) TCGA-CG-5725-01 15 24922006 24922006 C T NPAP1 Missense_Mutation p.S331L 0.88 tolerated(0.23) benign(0.148) TCGA-CG-5725-01 15 39885837 39885837 G A THBS1 Missense_Mutation p.A1079T 0.18 deleterious(0) probably_damaging(0.998) TCGA-CG-5725-01 15 41961590 41961590 T - MGA Frame_Shift_Del p.H167Ifs*49 0.31 TCGA-CG-5725-01 15 42057159 42057188 TAAAAGGTCCCCTATTCTCAGGACCAGTGG - MGA In_Frame_Del p.K2608_V2617del 0.14 TCGA-CG-5725-01 15 45777428 45777429 AT - SLC30A4 Frame_Shift_Del p.I408Sfs*20 0.27 TCGA-CG-5725-01 15 77769900 77769900 G A HMG20A Missense_Mutation p.E207K 0.26 tolerated(0.55) benign(0.029) TCGA-CG-5725-01 16 1889459 1889461 ATG - FAHD1 3'UTR 0.46 TCGA-CG-5725-01 16 2156661 2156661 C T PKD1 Silent p.T2409T 0.38 TCGA-CG-5725-01 16 29883844 29883845 - TCAC SEZ6L2 Frame_Shift_Ins p.T831Sfs*70 0.42 TCGA-CG-5725-01 16 50258847 50258848 - AG PAPD5 Frame_Shift_Ins p.D505Efs*10 0.28 TCGA-CG-5725-01 16 70697913 70697913 C T MTSS1L Silent p.R637R 0.40 TCGA-CG-5725-01 17 18833952 18833977 CGGATCCACAATGGGGAGTCCATGTC - PRPSAP2 Frame_Shift_Del p.R351Lfs*10 0.35 TCGA-CG-5725-01 17 20406524 20406524 C T RP11-434D2.7 3'Flank 0.31 TCGA-CG-5725-01 17 35930790 35930791 - C SYNRG Frame_Shift_Ins p.G432Wfs*8 0.27 TCGA-CG-5725-01 17 38560458 38560458 C A TOP2A Missense_Mutation p.K743N 0.42 deleterious(0) probably_damaging(0.987) TCGA-CG-5725-01 17 61498904 61498904 G A TANC2 Missense_Mutation p.R1854Q 0.37 deleterious_low_confidence(0) possibly_damaging(0.644) TCGA-CG-5725-01 17 65341955 65341956 - T PSMD12 Frame_Shift_Ins p.L272Tfs*9 0.17 TCGA-CG-5725-01 17 72785005 72785005 T G TMEM104 Missense_Mutation p.L82R 0.57 tolerated(0.39) benign(0) TCGA-CG-5725-01 17 73498181 73498181 G A CASKIN2 Missense_Mutation p.R992W 0.29 deleterious(0) probably_damaging(0.973) TCGA-CG-5725-01 17 74533626 74533626 A T CYGB 5'UTR 0.56 TCGA-CG-5725-01 17 9490044 9490045 - AG WDR16 Frame_Shift_Ins p.L103Sfs*28 0.44 TCGA-CG-5725-01 19 31039824 31039824 G A ZNF536 Missense_Mutation p.V1100M 0.44 tolerated_low_confidence(1) benign(0.003) TCGA-CG-5725-01 19 41071336 41071337 - CATC SPTBN4 Frame_Shift_Ins p.V1977Ifs*15 0.20 TCGA-CG-5725-01 19 5692159 5692159 C T LONP1 Missense_Mutation p.D922N 0.76 tolerated(0.11) probably_damaging(0.955) TCGA-CG-5725-01 19 6829798 6829799 - ATGC VAV1 Frame_Shift_Ins p.F425Cfs*12 0.58 TCGA-CG-5725-01 1 117640055 117640061 GGTAATG - TTF2 Splice_Site p.X1090_splice 0.35 TCGA-CG-5725-01 1 150266866 150266875 ACAGGTAACT - MRPS21 Splice_Site p.X27_splice 0.35 TCGA-CG-5725-01 1 160389028 160389028 G A VANGL2 Silent p.T143T 0.48 TCGA-CG-5725-01 1 174340152 174340153 - TGTC RABGAP1L Frame_Shift_Ins p.K503Vfs*2 0.40 TCGA-CG-5725-01 1 197112645 197112657 GTAGTAGATCGAC - ASPM Frame_Shift_Del p.R242Pfs*14 0.22 TCGA-CG-5725-01 1 225755107 225755108 - CT ENAH Frame_Shift_Ins p.S5Rfs*10 0.08 TCGA-CG-5725-01 1 228645463 228645463 G A HIST3H2A Missense_Mutation p.S19L 0.37 deleterious_low_confidence(0) unknown(0) TCGA-CG-5725-01 1 235916498 235916503 TCTCTA - LYST In_Frame_Del p.I2434_E2435del 0.35 TCGA-CG-5725-01 1 27683543 27683544 - AGT MAP3K6 In_Frame_Ins p.L1108dup 0.76 TCGA-CG-5725-01 1 44159762 44159762 C T KDM4A Missense_Mutation p.R825C 0.95 deleterious(0) probably_damaging(0.993) TCGA-CG-5725-01 1 55307376 55307381 GTACCT - C1orf177 Intron 0.40 TCGA-CG-5725-01 1 8415164 8415166 CTT - RERE In_Frame_Del p.E1561del 0.44 TCGA-CG-5725-01 20 24995855 24995856 - G ACSS1 Frame_Shift_Ins p.I420Hfs*4 0.31 TCGA-CG-5725-01 20 62161438 62161439 GG - PTK6 Frame_Shift_Del p.P387Lfs*8 0.21 TCGA-CG-5725-01 22 42607130 42607161 TTCAGGAGGACCACTCTTCAAAGACAGTATAT - TCF20 Frame_Shift_Del p.D1384Gfs*10 0.77 TCGA-CG-5725-01 2 109087107 109087107 A G GCC2 Missense_Mutation p.N441S 0.46 tolerated(0.27) benign(0.036) TCGA-CG-5725-01 2 163133243 163133249 TGGTGGG - IFIH1 Frame_Shift_Del p.A751Vfs*2 0.63 TCGA-CG-5725-01 2 207651491 207651496 GGTTAT AAC FASTKD2 In_Frame_Del p.G488_Y489delinsN 0.31 TCGA-CG-5725-01 2 215843526 215843528 ACC - ABCA12 Splice_Site p.X1659_splice 0.44 TCGA-CG-5725-01 2 240078399 240078408 GGTGGTTATA - HDAC4 Frame_Shift_Del p.Y225Rfs*23 0.32 TCGA-CG-5725-01 2 71781054 71781055 - CCAG DYSF Frame_Shift_Ins p.R702Qfs*33 0.28 TCGA-CG-5725-01 2 79363175 79363176 - C REG1P RNA 0.31 TCGA-CG-5725-01 2 85255125 85255133 ACAAGGCAT - KCMF1 In_Frame_Del p.R45_T47del 0.24 TCGA-CG-5725-01 2 85778178 85778183 GTACTC - GGCX In_Frame_Del p.E585_Y586del 0.43 TCGA-CG-5725-01 3 108677644 108677644 G T MORC1 3'UTR 0.31 TCGA-CG-5725-01 3 133485263 133485264 - C TF Frame_Shift_Ins p.H492Pfs*5 0.40 TCGA-CG-5725-01 3 142681655 142681656 - G PAQR9 Frame_Shift_Ins p.Y175Sfs*202 0.14 TCGA-CG-5725-01 3 158390244 158390245 - TAGT LXN Nonsense_Mutation p.Y8* 0.19 TCGA-CG-5725-01 3 164786938 164786941 AGTC - SI Frame_Shift_Del p.D100Lfs*19 0.55 TCGA-CG-5725-01 3 171377000 171377001 - CA PLD1 Intron 0.17 TCGA-CG-5725-01 3 186449361 186449366 TACATC G KNG1 Frame_Shift_Del p.Y234Gfs*14 0.14 TCGA-CG-5725-01 3 196051187 196051188 - TC TM4SF19 Frame_Shift_Ins p.T135Rfs*111 0.41 TCGA-CG-5725-01 3 20202702 20202703 - GA SGOL1 Frame_Shift_Ins p.P528Hfs*34 0.43 TCGA-CG-5725-01 3 35723279 35723279 A - ARPP21 Frame_Shift_Del p.E13Rfs*53 0.33 TCGA-CG-5725-01 3 53836195 53836209 CATTAGGTATGTGCT - CACNA1D Splice_Site p.X1832_splice 0.64 TCGA-CG-5725-01 3 9792006 9792007 - C OGG1 Frame_Shift_Ins p.H13Pfs*20 0.47 TCGA-CG-5725-01 4 24529563 24529564 - CC DHX15 Frame_Shift_Ins p.E791Gfs*11 0.26 TCGA-CG-5725-01 4 57244590 57244591 - TATCA AASDH Frame_Shift_Ins p.T131Mfs*11 0.20 TCGA-CG-5725-01 4 74736276 74736282 CTGGTGG - CXCL1 3'UTR 0.30 TCGA-CG-5725-01 5 140869709 140869709 C A PCDHGC5 Missense_Mutation p.A301E 0.10 tolerated(1) benign(0.009) TCGA-CG-5725-01 5 140951490 140951492 CAC - DIAPH1 Splice_Site p.X825_splice 0.80 TCGA-CG-5725-01 5 150922741 150922741 C A FAT2 Silent p.L2649L 0.06 TCGA-CG-5725-01 5 180218745 180218745 C T MGAT1 Silent p.S409S 0.74 TCGA-CG-5725-01 5 35033644 35033644 C A AGXT2 Missense_Mutation p.G199V 0.36 deleterious(0) probably_damaging(0.999) TCGA-CG-5725-01 5 78981056 78981065 ACAGTATACT - PAPD4 Frame_Shift_Del p.S473Lfs*2 0.84 TCGA-CG-5725-01 6 2783745 2783746 - C WRNIP1 Frame_Shift_Ins p.L533Tfs*40 0.36 TCGA-CG-5725-01 6 30460197 30460198 - T HLA-E Frame_Shift_Ins p.Y341Lfs*3 0.27 TCGA-CG-5725-01 6 69349199 69349199 C T BAI3 Missense_Mutation p.S211L 0.81 deleterious(0.05) probably_damaging(0.921) TCGA-CG-5725-01 6 76376638 76376638 A C SENP6 Missense_Mutation p.K402T 0.13 deleterious(0) probably_damaging(0.996) TCGA-CG-5725-01 6 89977396 89977397 AC - GABRR2 Splice_Site p.X246_splice 0.47 TCGA-CG-5725-01 7 27147975 27147975 G A HOXA3 Silent p.F297F 0.31 TCGA-CG-5725-01 7 87144608 87144608 C A ABCB1 Missense_Mutation p.C1074F 0.25 deleterious(0) probably_damaging(0.989) TCGA-CG-5725-01 8 124094943 124094943 T G TBC1D31 Missense_Mutation p.F76V 0.40 deleterious(0.01) benign(0.076) TCGA-CG-5725-01 8 125132062 125132063 - TACT FER1L6 3'UTR 0.39 TCGA-CG-5725-01 8 128428332 128428332 C T POU5F1B Missense_Mutation p.A74V 0.27 tolerated(0.17) benign(0.018) TCGA-CG-5725-01 8 133045361 133045361 C A OC90 Missense_Mutation p.V262F 0.27 deleterious(0.02) possibly_damaging(0.824) TCGA-CG-5725-01 8 21767077 21767078 - G DOK2 Frame_Shift_Ins p.L329Sfs*6 0.20 TCGA-CG-5725-01 9 100053767 100053767 G C CCDC180 Intron 0.40 TCGA-CG-5725-01 9 125330644 125330650 ACCAGGT - OR1L8 Frame_Shift_Del p.Y36Sfs*3 0.13 TCGA-CG-5725-01 9 127262899 127262899 G A NR5A1 Missense_Mutation p.R114W 0.34 deleterious(0) probably_damaging(0.973) TCGA-CG-5725-01 9 131344986 131344986 G A SPTAN1 Missense_Mutation p.R555H 0.04 deleterious(0.01) possibly_damaging(0.837) TCGA-CG-5725-01 9 136901394 136901424 CTTCCTCTGAGTCGTAGGAGGCAGATGCCTG - BRD3 Frame_Shift_Del p.Q556Rfs*7 0.18 TCGA-CG-5725-01 9 138523289 138523289 C A GLT6D1 Missense_Mutation p.W36L 0.42 deleterious(0.01) probably_damaging(0.995) TCGA-CG-5725-01 X 22291218 22291218 G A ZNF645 Missense_Mutation p.R37H 0.85 deleterious(0.05) benign(0) TCGA-CG-5726-01 10 101439083 101439085 TTG - ENTPD7 In_Frame_Del p.V88del 0.43 TCGA-CG-5726-01 10 101472987 101472987 T G COX15 3'Flank 0.34 TCGA-CG-5726-01 10 102676537 102676537 G A FAM178A Missense_Mutation p.R132H 0.46 tolerated(0.18) benign(0.01) TCGA-CG-5726-01 10 103221770 103221770 C T BTRC Silent p.G63G 0.35 TCGA-CG-5726-01 10 103558790 103558790 G A MGEA5 Missense_Mutation p.P540S 0.08 tolerated(0.25) possibly_damaging(0.89) TCGA-CG-5726-01 10 104158163 104158163 C - NFKB2 Frame_Shift_Del p.Y294Ifs*4 0.34 TCGA-CG-5726-01 10 104164452 104164452 C T PSD Missense_Mutation p.R863H 0.42 deleterious(0) probably_damaging(0.999) TCGA-CG-5726-01 10 104414974 104414974 G A TRIM8 Silent p.Q268Q 0.08 TCGA-CG-5726-01 10 104491919 104491919 C T SFXN2 Missense_Mutation p.A222V 0.34 tolerated(0.79) benign(0.004) TCGA-CG-5726-01 10 105172931 105172931 G A PDCD11 Missense_Mutation p.R346H 0.43 tolerated(0.05) benign(0.189) TCGA-CG-5726-01 10 105215352 105215352 C T CALHM1 Silent p.T236T 0.19 TCGA-CG-5726-01 10 105727517 105727517 A T SLK Missense_Mutation p.N5I 0.36 deleterious(0) probably_damaging(0.999) TCGA-CG-5726-01 10 105819448 105819448 T - COL17A1 Frame_Shift_Del p.E391Kfs*12 0.30 TCGA-CG-5726-01 10 106865213 106865213 T - SORCS3 Frame_Shift_Del p.F385Lfs*21 0.31 TCGA-CG-5726-01 10 1142283 1142283 C - WDR37 Intron 0.24 TCGA-CG-5726-01 10 115481532 115481532 A - CASP7 Frame_Shift_Del p.A159Lfs*17 0.29 TCGA-CG-5726-01 10 115917415 115917415 A G C10orf118 Silent p.H219H 0.34 TCGA-CG-5726-01 10 116057097 116057097 C T AFAP1L2 Missense_Mutation p.R730H 0.36 deleterious(0) probably_damaging(0.957) TCGA-CG-5726-01 10 118196370 118196370 C T PNLIPRP3 Missense_Mutation p.A66V 0.04 tolerated(0.24) benign(0.005) TCGA-CG-5726-01 10 118891601 118891601 C T VAX1 3'Flank 0.47 TCGA-CG-5726-01 10 118897523 118897523 G A VAX1 Silent p.D15D 0.40 TCGA-CG-5726-01 10 120354266 120354266 A G PRLHR Missense_Mutation p.V164A 0.30 tolerated(0.79) benign(0.007) TCGA-CG-5726-01 10 123847469 123847469 T C TACC2 Silent p.T1818T 0.32 TCGA-CG-5726-01 10 125805497 125805498 - C CHST15 Frame_Shift_Ins p.K78Efs*4 0.37 TCGA-CG-5726-01 10 126086392 126086392 A - OAT 3'UTR 0.44 TCGA-CG-5726-01 10 126370273 126370273 G A FAM53B Missense_Mutation p.P270L 0.42 deleterious(0) probably_damaging(0.958) TCGA-CG-5726-01 10 127542779 127542779 A - DHX32 Intron 0.38 TCGA-CG-5726-01 10 129908709 129908709 C G MKI67 Missense_Mutation p.L783F 0.05 tolerated(0.1) benign(0.286) TCGA-CG-5726-01 10 13151192 13151192 C - OPTN Frame_Shift_Del p.H26Tfs*19 0.36 TCGA-CG-5726-01 10 133784266 133784266 G A BNIP3 Missense_Mutation p.R139C 0.13 tolerated(0.07) benign(0.284) TCGA-CG-5726-01 10 13696452 13696452 G - FRMD4A Frame_Shift_Del p.P1005Qfs*8 0.52 TCGA-CG-5726-01 10 14867476 14867476 A G CDNF Splice_Site p.X129_splice 0.42 TCGA-CG-5726-01 10 17865318 17865318 A - MRC1L1 Frame_Shift_Del p.N104Mfs*57 0.32 TCGA-CG-5726-01 10 20453421 20453421 A T PLXDC2 Missense_Mutation p.S270C 0.06 deleterious(0) benign(0.053) TCGA-CG-5726-01 10 21117557 21117557 A G NEBL Missense_Mutation p.Y560H 0.29 deleterious(0) probably_damaging(0.999) TCGA-CG-5726-01 10 21462728 21462730 ACG - NEBL-AS1 5'Flank 0.14 TCGA-CG-5726-01 10 27702960 27702960 C T PTCHD3 Missense_Mutation p.A74T 0.30 tolerated_low_confidence(0.07) possibly_damaging(0.682) TCGA-CG-5726-01 10 29754537 29754537 G A SVIL Silent p.S2040S 0.41 TCGA-CG-5726-01 10 29760116 29760116 C - SVIL Frame_Shift_Del p.M1863Wfs*44 0.36 TCGA-CG-5726-01 10 3143641 3143641 C T PFKP Nonsense_Mutation p.R117* 0.35 TCGA-CG-5726-01 10 3193501 3193501 G A PITRM1 Missense_Mutation p.A559V 0.10 tolerated(0.06) benign(0.41) TCGA-CG-5726-01 10 43882582 43882582 C T HNRNPF Missense_Mutation p.D251N 0.36 tolerated(0.21) benign(0.01) TCGA-CG-5726-01 10 45496243 45496243 G - C10orf25 Frame_Shift_Del p.P22Qfs*25 0.37 TCGA-CG-5726-01 10 46121505 46121505 C T ZFAND4 Missense_Mutation p.G589D 0.34 deleterious(0.05) probably_damaging(0.976) TCGA-CG-5726-01 10 50678501 50678501 A - ERCC6 Frame_Shift_Del p.W1169Gfs*32 0.12 TCGA-CG-5726-01 10 50943176 50943176 A G OGDHL 3'UTR 0.35 TCGA-CG-5726-01 10 51754188 51754188 A G AGAP6 Missense_Mutation p.H132R 0.11 deleterious_low_confidence(0.03) benign(0.012) TCGA-CG-5726-01 10 54074209 54074209 C T DKK1 Silent p.G5G 0.13 TCGA-CG-5726-01 10 58119262 58119262 A G ZWINT Missense_Mutation p.V152A 0.38 tolerated(1) benign(0) TCGA-CG-5726-01 10 61833637 61833637 G A ANK3 Silent p.I2334I 0.05 TCGA-CG-5726-01 10 61835708 61835708 G - ANK3 Frame_Shift_Del p.P1644Lfs*27 0.27 TCGA-CG-5726-01 10 64936152 64936152 G A JMJD1C Missense_Mutation p.R2436C 0.35 deleterious(0.01) probably_damaging(1) TCGA-CG-5726-01 10 64958334 64958334 A G JMJD1C Silent p.G1810G 0.36 TCGA-CG-5726-01 10 69792621 69792621 A G HERC4 Missense_Mutation p.Y231H 0.38 tolerated(0.54) benign(0.005) TCGA-CG-5726-01 10 71144668 71144668 C T HK1 Silent p.D616D 0.44 TCGA-CG-5726-01 10 73059067 73059067 C T UNC5B 3'UTR 0.40 TCGA-CG-5726-01 10 73594172 73594172 G A PSAP Missense_Mutation p.A44V 0.36 deleterious(0.03) probably_damaging(0.919) TCGA-CG-5726-01 10 73767332 73767332 C T CHST3 Silent p.A181A 0.27 TCGA-CG-5726-01 10 75113422 75113422 T - TTC18 Frame_Shift_Del p.I48Lfs*37 0.14 TCGA-CG-5726-01 10 75530210 75530210 G A SEC24C Missense_Mutation p.S1012N 0.33 tolerated(0.05) benign(0.005) TCGA-CG-5726-01 10 75560431 75560431 C T ZSWIM8 Missense_Mutation p.A1687V 0.28 tolerated(0.92) possibly_damaging(0.866) TCGA-CG-5726-01 10 75834640 75834640 T C VCL Silent p.D254D 0.13 TCGA-CG-5726-01 10 7621950 7621950 G A ITIH5 Missense_Mutation p.R396W 0.27 deleterious(0) probably_damaging(0.975) TCGA-CG-5726-01 10 76790391 76790391 G A KAT6B Missense_Mutation p.A1937T 0.40 probably_damaging(0.991) TCGA-CG-5726-01 10 79567608 79567608 C T DLG5 Missense_Mutation p.R1581H 0.31 tolerated(0.31) probably_damaging(0.989) TCGA-CG-5726-01 10 79745713 79745713 T C POLR3A Missense_Mutation p.T1007A 0.47 deleterious(0.03) possibly_damaging(0.734) TCGA-CG-5726-01 10 8100470 8100470 G A GATA3 Silent p.P148P 0.46 TCGA-CG-5726-01 10 81072446 81072446 C - ZMIZ1 Frame_Shift_Del p.D1051Tfs*73 0.41 TCGA-CG-5726-01 10 85984521 85984521 T A LRIT2 Missense_Mutation p.T154S 0.08 deleterious(0.02) probably_damaging(0.99) TCGA-CG-5726-01 10 88211855 88211855 T C WAPAL Missense_Mutation p.S995G 0.15 deleterious(0.02) probably_damaging(0.996) TCGA-CG-5726-01 10 88820771 88820771 T C GLUD1 Silent p.L320L 0.09 TCGA-CG-5726-01 10 88988681 88988681 C A NUTM2A Silent p.P348P 0.09 TCGA-CG-5726-01 10 90701123 90701123 C G ACTA2 Missense_Mutation p.G160A 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.626) TCGA-CG-5726-01 10 95079635 95079635 C T MYOF Silent p.A1864A 0.29 TCGA-CG-5726-01 10 95347331 95347331 G A FFAR4 Missense_Mutation p.V367I 0.15 tolerated(0.29) benign(0.003) TCGA-CG-5726-01 10 97975104 97975104 G A BLNK Missense_Mutation p.P217S 0.44 tolerated(0.37) benign(0.004) TCGA-CG-5726-01 10 98743674 98743674 A T C10orf12 Nonsense_Mutation p.K843* 0.41 TCGA-CG-5726-01 11 100998808 100998808 C T PGR Missense_Mutation p.G332R 0.57 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-CG-5726-01 11 102562575 102562575 C A MMP27 Missense_Mutation p.K488N 0.42 tolerated_low_confidence(0.07) benign(0.035) TCGA-CG-5726-01 11 102738724 102738724 G A MMP12 RNA 0.48 TCGA-CG-5726-01 11 102953515 102953515 A - DCUN1D5 Frame_Shift_Del p.F101Lfs*7 0.28 TCGA-CG-5726-01 11 104874011 104874011 T - CASP5 Frame_Shift_Del p.N191Ifs*8 0.36 TCGA-CG-5726-01 11 10508889 10508889 G T AMPD3 Missense_Mutation p.R315L 0.44 deleterious(0) probably_damaging(0.999) TCGA-CG-5726-01 11 105481658 105481658 T C GRIA4 5'UTR 0.50 TCGA-CG-5726-01 11 10615772 10615772 A G MRVI1 Intron 0.30 TCGA-CG-5726-01 11 108788854 108788854 T - DDX10 Intron 0.26 TCGA-CG-5726-01 11 111425991 111425991 A - LAYN Frame_Shift_Del p.T222Hfs*10 0.34 TCGA-CG-5726-01 11 113287617 113287617 G A DRD2 Missense_Mutation p.S167F 0.38 deleterious(0) probably_damaging(0.999) TCGA-CG-5726-01 11 11643032 11643032 C T GALNT18 Missense_Mutation p.A37T 0.15 tolerated(0.7) benign(0.383) TCGA-CG-5726-01 11 116706810 116706810 C T APOA1 Missense_Mutation p.R173H 0.42 deleterious(0) probably_damaging(0.999) TCGA-CG-5726-01 11 117389401 117389401 C T DSCAML1 Silent p.A490A 0.33 TCGA-CG-5726-01 11 118074193 118074193 A T AMICA1 Missense_Mutation p.L241Q 0.41 tolerated(0.09) possibly_damaging(0.791) TCGA-CG-5726-01 11 118074310 118074310 A T AMICA1 Missense_Mutation p.F202Y 0.39 deleterious(0.02) probably_damaging(0.979) TCGA-CG-5726-01 11 118184512 118184512 T C CD3E Missense_Mutation p.V148A 0.14 deleterious(0.03) probably_damaging(0.968) TCGA-CG-5726-01 11 118354898 118354898 G A KMT2A Missense_Mutation p.E1363K 0.32 probably_damaging(0.991) TCGA-CG-5726-01 11 118771337 118771337 T G BCL9L Missense_Mutation p.M1039L 0.40 benign(0) TCGA-CG-5726-01 11 123777411 123777411 C T OR8D4 Silent p.S91S 0.30 TCGA-CG-5726-01 11 124120790 124120790 A G OR8G1 Missense_Mutation p.Y123C 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.608) TCGA-CG-5726-01 11 125478022 125478022 C T STT3A Missense_Mutation p.H267Y 0.41 deleterious(0) probably_damaging(0.961) TCGA-CG-5726-01 11 12549518 12549518 C T PARVA 3'UTR 0.41 TCGA-CG-5726-01 11 125765842 125765842 C T PUS3 Missense_Mutation p.R113Q 0.34 deleterious(0) probably_damaging(0.999) TCGA-CG-5726-01 11 1261421 1261421 C T MUC5B Silent p.T1262T 0.31 TCGA-CG-5726-01 11 128843372 128843372 A G ARHGAP32 Intron 0.09 TCGA-CG-5726-01 11 129784663 129784663 G A PRDM10 Missense_Mutation p.S930L 0.06 deleterious(0.01) benign(0.277) TCGA-CG-5726-01 11 129993525 129993525 C T APLP2 Missense_Mutation p.A314V 0.32 deleterious(0.02) probably_damaging(0.965) TCGA-CG-5726-01 11 130784286 130784286 T C SNX19 Missense_Mutation p.S517G 0.36 deleterious(0.04) possibly_damaging(0.76) TCGA-CG-5726-01 11 134050984 134050984 G A NCAPD3 Silent p.D849D 0.30 TCGA-CG-5726-01 11 134079287 134079287 G A NCAPD3 Missense_Mutation p.H218Y 0.26 tolerated(1) benign(0.002) TCGA-CG-5726-01 11 134118831 134118831 A G THYN1 Missense_Mutation p.M168T 0.18 tolerated(0.22) benign(0.022) TCGA-CG-5726-01 11 13466713 13466713 A G BTBD10 5'UTR 0.17 TCGA-CG-5726-01 11 14529273 14529273 T C PSMA1 Missense_Mutation p.T228A 0.38 tolerated(0.49) benign(0) TCGA-CG-5726-01 11 1587134 1587134 G A DUSP8 5'UTR 0.32 TCGA-CG-5726-01 11 16816067 16816067 G - PLEKHA7 Frame_Shift_Del p.L905Ffs*69 0.25 TCGA-CG-5726-01 11 17190949 17190949 T - PIK3C2A Frame_Shift_Del p.T114Hfs*10 0.36 TCGA-CG-5726-01 11 17449860 17449860 G A ABCC8 Silent p.G672G 0.39 TCGA-CG-5726-01 11 17531369 17531369 G A USH1C Missense_Mutation p.P516L 0.55 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-CG-5726-01 11 17809839 17809839 G T SERGEF Silent p.G390G 0.41 TCGA-CG-5726-01 11 18636367 18636367 G - SPTY2D1 Frame_Shift_Del p.P485Rfs*12 0.37 TCGA-CG-5726-01 11 19256510 19256510 G A E2F8 Nonsense_Mutation p.R183* 0.05 TCGA-CG-5726-01 11 20066528 20066528 G A NAV2 Missense_Mutation p.A1095T 0.46 deleterious(0.02) probably_damaging(0.996) TCGA-CG-5726-01 11 26529809 26529809 G A ANO3 Silent p.E197E 0.36 TCGA-CG-5726-01 11 28112174 28112174 G T KIF18A Missense_Mutation p.A230D 0.31 deleterious(0) probably_damaging(1) TCGA-CG-5726-01 11 3023796 3023796 G A CARS Missense_Mutation p.A751V 0.06 tolerated(0.08) benign(0.207) TCGA-CG-5726-01 11 33689769 33689769 C T KIAA1549L 3'UTR 0.31 TCGA-CG-5726-01 11 4080587 4080587 C T STIM1 Silent p.L192L 0.26 TCGA-CG-5726-01 11 44129758 44129758 C T EXT2 Missense_Mutation p.R199C 0.09 deleterious(0.02) possibly_damaging(0.828) TCGA-CG-5726-01 11 45671728 45671728 T C CHST1 Missense_Mutation p.D249G 0.38 tolerated(0.39) probably_damaging(0.986) TCGA-CG-5726-01 11 45955388 45955389 TC - PHF21A 3'UTR 0.41 TCGA-CG-5726-01 11 46419362 46419362 C T AMBRA1 Missense_Mutation p.G1089S 0.29 deleterious_low_confidence(0) probably_damaging(1) TCGA-CG-5726-01 11 46690085 46690085 T C ATG13 Missense_Mutation p.F430L 0.18 tolerated(0.13) probably_damaging(0.942) TCGA-CG-5726-01 11 46744981 46744981 C T F2 Missense_Mutation p.R158C 0.10 deleterious(0) probably_damaging(1) TCGA-CG-5726-01 11 47445735 47445735 C A PSMC3 Splice_Site p.X152_splice 0.38 TCGA-CG-5726-01 11 48346882 48346882 T - OR4C3 Frame_Shift_Del p.L132Wfs*11 0.19 TCGA-CG-5726-01 11 502079 502079 C T RNH1 Silent p.Q28Q 0.33 TCGA-CG-5726-01 11 51515297 51515297 A G OR4C46 Missense_Mutation p.N6D 0.17 deleterious_low_confidence(0.02) benign(0.157) TCGA-CG-5726-01 11 5153679 5153679 A - OR52A5 Frame_Shift_Del p.L65Wfs*20 0.36 TCGA-CG-5726-01 11 5221605 5221605 T C OR51V1 Missense_Mutation p.Q109R 0.09 deleterious(0.01) probably_damaging(1) TCGA-CG-5726-01 11 55587636 55587638 CTT - OR5D18 In_Frame_Del p.F179del 0.42 TCGA-CG-5726-01 11 558069 558069 G - C11orf35 Intron 0.23 TCGA-CG-5726-01 11 55861672 55861672 A - OR8I2 Frame_Shift_Del p.N298Mfs*4 0.43 TCGA-CG-5726-01 11 55944701 55944701 C A OR5J2 Missense_Mutation p.S203Y 0.45 tolerated(0.18) probably_damaging(0.934) TCGA-CG-5726-01 11 56409724 56409724 G T OR5AP2 Silent p.P64P 0.06 TCGA-CG-5726-01 11 57004323 57004323 G A APLNR Silent p.T52T 0.36 TCGA-CG-5726-01 11 5701141 5701141 C - TRIM5 Frame_Shift_Del p.Q90Rfs*51 0.30 TCGA-CG-5726-01 11 57254576 57254576 G A SLC43A1 Missense_Mutation p.P509S 0.08 deleterious(0.01) benign(0.128) TCGA-CG-5726-01 11 596998 596998 G A PHRF1 Silent p.A232A 0.28 TCGA-CG-5726-01 11 60468386 60468386 C A MS4A8 Missense_Mutation p.A18E 0.40 deleterious(0.02) possibly_damaging(0.691) TCGA-CG-5726-01 11 61405019 61405019 G C RPLP0P2 RNA 0.39 TCGA-CG-5726-01 11 61511425 61511425 G A DAGLA Missense_Mutation p.V865I 0.51 tolerated_low_confidence(0.41) benign(0) TCGA-CG-5726-01 11 61897562 61897562 C A INCENP Missense_Mutation p.S188Y 0.40 tolerated(0.06) unknown(0) TCGA-CG-5726-01 11 621608 621608 C T CDHR5 Missense_Mutation p.R154H 0.31 tolerated(0.12) benign(0.135) TCGA-CG-5726-01 11 62289273 62289273 G T AHNAK Missense_Mutation p.P4206T 0.44 probably_damaging(0.999) TCGA-CG-5726-01 11 62482999 62482999 T C HNRNPUL2 Silent p.R712R 0.06 TCGA-CG-5726-01 11 62752081 62752081 G - SLC22A6 Frame_Shift_Del p.L28Cfs*3 0.28 TCGA-CG-5726-01 11 63680346 63680346 G - RCOR2 Frame_Shift_Del p.P322Rfs*36 0.32 TCGA-CG-5726-01 11 64419616 64419616 G A NRXN2 Silent p.P809P 0.45 TCGA-CG-5726-01 11 65265646 65265646 C T MALAT1 RNA 0.49 TCGA-CG-5726-01 11 65268925 65268925 C - MALAT1 RNA 0.36 TCGA-CG-5726-01 11 65365835 65365835 C - MAP3K11 Frame_Shift_Del p.G824Afs*123 0.38 TCGA-CG-5726-01 11 65822610 65822610 C - SF3B2 Frame_Shift_Del p.P109Hfs*39 0.43 TCGA-CG-5726-01 11 66457628 66457628 C T SPTBN2 Missense_Mutation p.A1898T 0.05 tolerated(0.17) possibly_damaging(0.502) TCGA-CG-5726-01 11 6655386 6655386 G T DCHS1 Missense_Mutation p.P650H 0.18 deleterious(0.02) probably_damaging(0.986) TCGA-CG-5726-01 11 6662142 6662142 G - DCHS1 Frame_Shift_Del p.R235Gfs*9 0.33 TCGA-CG-5726-01 11 66625774 66625774 G A LRFN4 Missense_Mutation p.G187S 0.49 deleterious(0) probably_damaging(0.988) TCGA-CG-5726-01 11 67048958 67048958 C T ADRBK1 Missense_Mutation p.R226C 0.29 deleterious(0) probably_damaging(1) TCGA-CG-5726-01 11 67925991 67925991 C A SUV420H1 Missense_Mutation p.G608C 0.09 tolerated(0.39) benign(0.008) TCGA-CG-5726-01 11 68707031 68707031 C A IGHMBP2 Silent p.A938A 0.18 TCGA-CG-5726-01 11 71201915 71201915 C T NADSYN1 Silent p.Y529Y 0.06 TCGA-CG-5726-01 11 71716312 71716313 - G NUMA1 Frame_Shift_Ins p.H1933Tfs*22 0.43 TCGA-CG-5726-01 11 75898133 75898133 G A WNT11 Silent p.T347T 0.31 TCGA-CG-5726-01 11 7981709 7981709 G T NLRP10 Missense_Mutation p.Q484K 0.05 tolerated(0.36) benign(0.007) TCGA-CG-5726-01 11 7982707 7982707 G A NLRP10 Missense_Mutation p.T151M 0.32 tolerated(0.26) benign(0.003) TCGA-CG-5726-01 11 8496404 8496404 A G STK33 Missense_Mutation p.S17P 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.836) TCGA-CG-5726-01 11 86267648 86267648 C T ME3 Silent p.T138T 0.34 TCGA-CG-5726-01 11 88386447 88386447 G A GRM5 Missense_Mutation p.P346S 0.42 tolerated(0.08) probably_damaging(1) TCGA-CG-5726-01 11 8969711 8969711 A - TMEM9B 3'UTR 0.36 TCGA-CG-5726-01 11 89892496 89892496 A G NAALAD2 Missense_Mutation p.D327G 0.31 tolerated(0.47) benign(0.001) TCGA-CG-5726-01 11 9005478 9005478 C - NRIP3 Frame_Shift_Del p.K219Rfs*15 0.33 TCGA-CG-5726-01 11 92538325 92538325 A G FAT3 Missense_Mutation p.N2968S 0.23 possibly_damaging(0.734) TCGA-CG-5726-01 11 92539641 92539641 T C FAT3 Silent p.Y3069Y 0.50 TCGA-CG-5726-01 11 93212119 93212119 C T SMCO4 3'UTR 0.35 TCGA-CG-5726-01 11 93454921 93454921 G - KIAA1731 Intron 0.37 TCGA-CG-5726-01 11 93468345 93468345 T - KIAA1731 3'Flank 0.30 TCGA-CG-5726-01 11 94353244 94353244 C T PIWIL4 Silent p.N792N 0.40 TCGA-CG-5726-01 11 9499965 9499965 G A ZNF143 Silent p.A134A 0.41 TCGA-CG-5726-01 12 100551322 100551322 G A AC010203.1 5'Flank 0.11 TCGA-CG-5726-01 12 10373153 10373153 A G GABARAPL1 Missense_Mutation p.Y95C 0.32 deleterious(0) probably_damaging(1) TCGA-CG-5726-01 12 105388388 105388388 A G C12orf45 Missense_Mutation p.I158V 0.39 tolerated(0.94) benign(0.003) TCGA-CG-5726-01 12 105553918 105553918 C - KIAA1033 Frame_Shift_Del p.P1019Lfs*2 0.33 TCGA-CG-5726-01 12 10601870 10601870 G T KLRC1 Missense_Mutation p.S152Y 0.32 deleterious(0) probably_damaging(0.999) TCGA-CG-5726-01 12 106460493 106460493 C T NUAK1 3'UTR 0.06 TCGA-CG-5726-01 12 106460846 106460846 C T NUAK1 Missense_Mutation p.D574N 0.53 deleterious(0.02) benign(0.018) TCGA-CG-5726-01 12 106977064 106977064 T - RP11-144F15.1 Intron 0.36 TCGA-CG-5726-01 12 108169061 108169061 C T ASCL4 Silent p.G23G 0.16 TCGA-CG-5726-01 12 108169097 108169097 C - ASCL4 Frame_Shift_Del p.L37Sfs*53 0.38 TCGA-CG-5726-01 12 112167624 112167624 C T ACAD10 Missense_Mutation p.R451C 0.42 deleterious(0.01) possibly_damaging(0.534) TCGA-CG-5726-01 12 112229927 112229927 G - ALDH2 Frame_Shift_Del p.K289Rfs*122 0.32 TCGA-CG-5726-01 12 11244407 11244407 G A TAS2R43 Missense_Mutation p.A141V 0.47 tolerated(1) benign(0.001) TCGA-CG-5726-01 12 112846235 112846235 C T RPL6 Missense_Mutation p.A76T 0.35 tolerated(0.62) benign(0.023) TCGA-CG-5726-01 12 113386827 113386827 C T OAS3 Silent p.I397I 0.36 TCGA-CG-5726-01 12 113698206 113698206 C - TPCN1 Frame_Shift_Del p.S123Vfs*19 0.44 TCGA-CG-5726-01 12 115121113 115121113 A - TBX3 5'UTR 0.32 TCGA-CG-5726-01 12 116446528 116446528 G A MED13L Nonsense_Mutation p.R564* 0.36 TCGA-CG-5726-01 12 121014523 121014523 C T RNF10 3'UTR 0.34 TCGA-CG-5726-01 12 121756174 121756174 G A ANAPC5 Missense_Mutation p.A600V 0.45 tolerated(0.1) probably_damaging(0.998) TCGA-CG-5726-01 12 122078974 122078974 G A ORAI1 Missense_Mutation p.A113T 0.45 tolerated(0.77) benign(0.016) TCGA-CG-5726-01 12 123307941 123307941 A - CCDC62 Frame_Shift_Del p.N679Ifs*18 0.32 TCGA-CG-5726-01 12 123419951 123419951 G A ABCB9 Silent p.L591L 0.10 TCGA-CG-5726-01 12 124359903 124359903 A G DNAH10 Silent p.A2570A 0.40 TCGA-CG-5726-01 12 124839388 124839388 T - NCOR2 Frame_Shift_Del p.K1160Sfs*8 0.21 TCGA-CG-5726-01 12 124915272 124915272 C T NCOR2 Missense_Mutation p.R315H 0.42 unknown(0) TCGA-CG-5726-01 12 132393481 132393481 A G ULK1 Missense_Mutation p.M177V 0.08 deleterious(0.01) probably_damaging(0.976) TCGA-CG-5726-01 12 132394489 132394489 C T ULK1 Silent p.L251L 0.39 TCGA-CG-5726-01 12 132688118 132688118 G A GALNT9 Missense_Mutation p.R33C 0.34 deleterious(0) probably_damaging(1) TCGA-CG-5726-01 12 133210876 133210876 G A POLE Missense_Mutation p.A1967V 0.46 tolerated(0.27) benign(0.001) TCGA-CG-5726-01 12 14650647 14650648 - C ATF7IP Frame_Shift_Ins p.E1154Rfs*41 0.43 TCGA-CG-5726-01 12 14650878 14650878 T C ATF7IP Silent p.C1228C 0.05 TCGA-CG-5726-01 12 22631335 22631335 C T C2CD5 Missense_Mutation p.G605D 0.05 tolerated(0.25) benign(0.01) TCGA-CG-5726-01 12 248074 248074 G A IQSEC3 Silent p.T515T 0.35 TCGA-CG-5726-01 12 25232195 25232195 C T LRMP Silent p.R14R 0.34 TCGA-CG-5726-01 12 27820253 27820253 G T PPFIBP1 Missense_Mutation p.E399D 0.11 tolerated(0.19) probably_damaging(0.983) TCGA-CG-5726-01 12 34179326 34179326 T - ALG10 Frame_Shift_Del p.S302Pfs*17 0.31 TCGA-CG-5726-01 12 3757704 3757704 G A EFCAB4B Intron 0.45 TCGA-CG-5726-01 12 39763645 39763645 A G KIF21A Silent p.G112G 0.04 TCGA-CG-5726-01 12 41408095 41408095 T C CNTN1 Missense_Mutation p.W727R 0.42 deleterious(0) probably_damaging(1) TCGA-CG-5726-01 12 41967474 41967474 C T PDZRN4 Nonsense_Mutation p.R965* 0.30 TCGA-CG-5726-01 12 42835202 42835202 T A PPHLN1 Missense_Mutation p.F332Y 0.40 deleterious(0.02) probably_damaging(0.955) TCGA-CG-5726-01 12 45784262 45784262 C T ANO6 Missense_Mutation p.A477V 0.35 tolerated(0.63) benign(0.141) TCGA-CG-5726-01 12 46582675 46582677 AAG - SLC38A1 3'UTR 0.47 TCGA-CG-5726-01 12 49048764 49048764 T C KANSL2 Missense_Mutation p.H436R 0.19 tolerated_low_confidence(0.42) benign(0.002) TCGA-CG-5726-01 12 49169835 49169835 G A ADCY6 Missense_Mutation p.R573W 0.32 deleterious(0) probably_damaging(0.991) TCGA-CG-5726-01 12 49230468 49230468 G A DDX23 Missense_Mutation p.R374C 0.40 tolerated(0.05) benign(0.246) TCGA-CG-5726-01 12 49396580 49396580 A G PRKAG1 3'UTR 0.33 TCGA-CG-5726-01 12 49412460 49412461 - G PRKAG1 Intron 0.48 TCGA-CG-5726-01 12 49425937 49425937 C T KMT2D Missense_Mutation p.G4184D 0.06 unknown(0) TCGA-CG-5726-01 12 51112539 51112539 C T DIP2B Missense_Mutation p.R967C 0.36 deleterious(0) probably_damaging(0.998) TCGA-CG-5726-01 12 53344642 53344642 C T KRT18 Silent p.I203I 0.69 TCGA-CG-5726-01 12 53433914 53433914 C T EIF4B Intron 0.34 TCGA-CG-5726-01 12 53679780 53679780 A G ESPL1 Missense_Mutation p.Q1087R 0.05 tolerated(0.7) benign(0.001) TCGA-CG-5726-01 12 53686642 53686642 C T ESPL1 Missense_Mutation p.R2017W 0.39 deleterious(0) probably_damaging(0.969) TCGA-CG-5726-01 12 55641767 55641767 A - OR6C74 Frame_Shift_Del p.A235Hfs*24 0.33 TCGA-CG-5726-01 12 56482369 56482369 C A ERBB3 Missense_Mutation p.P306H 0.38 deleterious(0) probably_damaging(1) TCGA-CG-5726-01 12 56552151 56552151 T C MYL6 5'UTR 0.37 TCGA-CG-5726-01 12 56868375 56868375 T C GLS2 Missense_Mutation p.M393V 0.32 deleterious(0) probably_damaging(0.997) TCGA-CG-5726-01 12 57036610 57036610 C T ATP5B Silent p.A266A 0.12 TCGA-CG-5726-01 12 57114912 57114912 T C NACA Silent p.S134S 0.09 TCGA-CG-5726-01 12 57406624 57406624 T C TAC3 Missense_Mutation p.K92E 0.40 deleterious(0) possibly_damaging(0.811) TCGA-CG-5726-01 12 57432281 57432281 G A MYO1A Missense_Mutation p.R559C 0.39 deleterious(0) probably_damaging(0.999) TCGA-CG-5726-01 12 57861144 57861144 G A GLI1 Missense_Mutation p.R314H 0.47 deleterious(0) probably_damaging(0.997) TCGA-CG-5726-01 12 58006732 58006732 C A ARHGEF25 Silent p.G78G 0.34 TCGA-CG-5726-01 12 58114724 58114724 C T OS9 3'UTR 0.09 TCGA-CG-5726-01 12 6424299 6424299 C T PLEKHG6 Silent p.I141I 0.35 TCGA-CG-5726-01 12 6428126 6428126 G A PLEKHG6 Intron 0.43 TCGA-CG-5726-01 12 6497628 6497630 CTC - LTBR In_Frame_Del p.S245del 0.50 TCGA-CG-5726-01 12 65113930 65113930 G A GNS Silent p.D484D 0.39 TCGA-CG-5726-01 12 68709980 68709980 C T MDM1 Silent p.T353T 0.33 TCGA-CG-5726-01 12 6926429 6926429 T C CD4 Silent p.P363P 0.24 TCGA-CG-5726-01 12 69744010 69744010 A - LYZ Frame_Shift_Del p.T88Pfs*24 0.31 TCGA-CG-5726-01 12 75601374 75601374 G A KCNC2 Silent p.C130C 0.35 TCGA-CG-5726-01 12 75893593 75893593 T - KRR1 Frame_Shift_Del p.K381Sfs*8 0.40 TCGA-CG-5726-01 12 7651478 7651478 C A CD163 Missense_Mutation p.G255V 0.03 deleterious(0.01) possibly_damaging(0.85) TCGA-CG-5726-01 12 77254062 77254062 A G CSRP2 Splice_Site p.X137_splice 0.33 TCGA-CG-5726-01 12 78553055 78553055 G T NAV3 Missense_Mutation p.A1620S 0.33 tolerated(0.08) possibly_damaging(0.46) TCGA-CG-5726-01 12 81839361 81839364 CAAA - PPFIA2 Frame_Shift_Del p.F181Sfs*10 0.44 TCGA-CG-5726-01 12 85518280 85518280 T C LRRIQ1 Silent p.I1330I 0.37 TCGA-CG-5726-01 12 85638604 85638604 T - LRRIQ1 Frame_Shift_Del p.S1687Pfs*2 0.28 TCGA-CG-5726-01 12 9020604 9020604 C A A2ML1 Missense_Mutation p.P1295H 0.37 deleterious(0) probably_damaging(0.999) TCGA-CG-5726-01 12 91371989 91371989 T C EPYC Silent p.P72P 0.10 TCGA-CG-5726-01 12 96259866 96259866 T - SNRPF 3'UTR 0.36 TCGA-CG-5726-01 13 100909900 100909900 G A PCCA Missense_Mutation p.R230H 0.45 deleterious(0) possibly_damaging(0.851) TCGA-CG-5726-01 13 103317270 103317270 A - TPP2 Frame_Shift_Del p.N1111Mfs*11 0.29 TCGA-CG-5726-01 13 108863110 108863111 - T LIG4 Frame_Shift_Ins p.S170Efs*13 0.25 TCGA-CG-5726-01 13 111156281 111156281 G T COL4A2 Missense_Mutation p.R1409M 0.18 possibly_damaging(0.803) TCGA-CG-5726-01 13 113975961 113975961 C T LAMP1 Missense_Mutation p.R345C 0.41 tolerated(0.17) possibly_damaging(0.806) TCGA-CG-5726-01 13 114005253 114005253 G A GRTP1 Missense_Mutation p.R126W 0.41 deleterious(0) possibly_damaging(0.901) TCGA-CG-5726-01 13 114469190 114469190 C T TMEM255B Missense_Mutation p.T50M 0.34 deleterious(0) probably_damaging(0.996) TCGA-CG-5726-01 13 20277356 20277357 - T PSPC1 Frame_Shift_Ins p.G511Rfs*5 0.18 TCGA-CG-5726-01 13 20398930 20398930 C T ZMYM5 Missense_Mutation p.R566Q 0.30 deleterious(0.02) benign(0.205) TCGA-CG-5726-01 13 20411871 20411871 G T ZMYM5 Silent p.P321P 0.45 TCGA-CG-5726-01 13 23910322 23910322 A G SACS Missense_Mutation p.F2565L 0.03 probably_damaging(0.983) TCGA-CG-5726-01 13 23911920 23911920 G A SACS Missense_Mutation p.S2032L 0.35 benign(0.062) TCGA-CG-5726-01 13 23928948 23928948 A G SACS Silent p.I601I 0.41 TCGA-CG-5726-01 13 23942624 23942624 G A SACS Nonsense_Mutation p.R88* 0.41 TCGA-CG-5726-01 13 24515851 24515851 C T ANKRD20A19P RNA 0.39 TCGA-CG-5726-01 13 24823742 24823742 G A SPATA13 Missense_Mutation p.G594D 0.40 deleterious(0.03) benign(0.105) TCGA-CG-5726-01 13 25832819 25832819 C T MTMR6 Missense_Mutation p.M246I 0.42 tolerated(0.18) benign(0.015) TCGA-CG-5726-01 13 28834653 28834653 G A PAN3 Missense_Mutation p.A440T 0.38 tolerated(0.16) possibly_damaging(0.652) TCGA-CG-5726-01 13 29599620 29599621 - G MTUS2 Frame_Shift_Ins p.A274Gfs*9 0.20 TCGA-CG-5726-01 13 31803392 31803392 A - B3GALTL Frame_Shift_Del p.S80Afs*3 0.27 TCGA-CG-5726-01 13 42772702 42772702 G A DGKH Silent p.T752T 0.15 TCGA-CG-5726-01 13 43462232 43462232 C - EPSTI1 3'UTR 0.25 TCGA-CG-5726-01 13 45976499 45976499 T A SLC25A30 Missense_Mutation p.M134L 0.33 tolerated(0.14) benign(0.162) TCGA-CG-5726-01 13 46721114 46721114 G A LCP1 Missense_Mutation p.A368V 0.04 deleterious(0) probably_damaging(0.979) TCGA-CG-5726-01 13 46946248 46946248 A G KIAA0226L Silent p.S121S 0.49 TCGA-CG-5726-01 13 49918315 49918315 A G CAB39L Silent p.T208T 0.05 TCGA-CG-5726-01 13 50097359 50097359 G T PHF11 Nonsense_Mutation p.E207* 0.06 TCGA-CG-5726-01 13 52796726 52796726 C - TPTE2P2 RNA 0.22 TCGA-CG-5726-01 13 53254127 53254129 CAT - SUGT1 In_Frame_Del p.S281del 0.34 TCGA-CG-5726-01 13 58207120 58207120 C T PCDH17 Missense_Mutation p.P147L 0.27 deleterious(0) probably_damaging(0.976) TCGA-CG-5726-01 13 60240695 60240695 T - DIAPH3 3'UTR 0.43 TCGA-CG-5726-01 13 70681728 70681728 C - KLHL1 Frame_Shift_Del p.G35Efs*31 0.24 TCGA-CG-5726-01 13 77632491 77632491 G A MYCBP2 Silent p.C4359C 0.45 TCGA-CG-5726-01 13 77725048 77725048 T - MYCBP2 Frame_Shift_Del p.M2280Cfs*20 0.30 TCGA-CG-5726-01 13 78320722 78320722 A - SLAIN1 Frame_Shift_Del p.T170Hfs*96 0.32 TCGA-CG-5726-01 13 84453682 84453682 G A SLITRK1 Missense_Mutation p.A654V 0.40 tolerated(0.19) benign(0.232) TCGA-CG-5726-01 13 84454544 84454544 A C SLITRK1 Missense_Mutation p.L367V 0.06 tolerated(0.13) benign(0.006) TCGA-CG-5726-01 13 84455457 84455457 A G SLITRK1 Silent p.H62H 0.40 TCGA-CG-5726-01 13 95131277 95131277 C T DCT Missense_Mutation p.R78Q 0.40 tolerated(0.3) benign(0.063) TCGA-CG-5726-01 13 95279495 95279495 T - GPR180 3'UTR 0.33 TCGA-CG-5726-01 13 95686970 95686970 T A ABCC4 Missense_Mutation p.K1253N 0.05 tolerated(0.31) benign(0.123) TCGA-CG-5726-01 13 96589179 96589179 A - UGGT2 Frame_Shift_Del p.L659Wfs*4 0.35 TCGA-CG-5726-01 13 99992580 99992580 G A UBAC2 Missense_Mutation p.G190S 0.04 deleterious(0.01) probably_damaging(0.998) TCGA-CG-5726-01 14 100380563 100380563 C T EML1 Silent p.G533G 0.36 TCGA-CG-5726-01 14 102472436 102472436 C - DYNC1H1 Frame_Shift_Del p.L1884Sfs*7 0.36 TCGA-CG-5726-01 14 102916927 102916927 G T TECPR2 Missense_Mutation p.G1116V 0.08 deleterious(0) possibly_damaging(0.852) TCGA-CG-5726-01 14 104204115 104204115 A C PPP1R13B Missense_Mutation p.S983A 0.24 tolerated(0.32) benign(0.02) TCGA-CG-5726-01 14 105178032 105178032 G A INF2 Missense_Mutation p.A829T 0.47 tolerated(0.17) unknown(0) TCGA-CG-5726-01 14 105406621 105406621 C - AHNAK2 Frame_Shift_Del p.G5056Vfs*30 0.35 TCGA-CG-5726-01 14 105418613 105418613 C T AHNAK2 Missense_Mutation p.A1059T 0.44 possibly_damaging(0.719) TCGA-CG-5726-01 14 105419812 105419812 T - AHNAK2 Frame_Shift_Del p.K659Rfs*5 0.38 TCGA-CG-5726-01 14 105818792 105818794 CTT - PACS2 In_Frame_Del p.F96del 0.39 TCGA-CG-5726-01 14 105849842 105849842 T A PACS2 Missense_Mutation p.I591N 0.36 deleterious(0) probably_damaging(0.991) TCGA-CG-5726-01 14 106321322 106321322 G A IGHM Missense_Mutation p.R223W 0.34 deleterious(0.01) possibly_damaging(0.78) TCGA-CG-5726-01 14 20824816 20824817 - C PARP2 Frame_Shift_Ins p.P448Tfs*2 0.32 TCGA-CG-5726-01 14 21542132 21542132 G A ARHGEF40 Silent p.P81P 0.37 TCGA-CG-5726-01 14 21967125 21967127 AAT - TOX4 3'UTR 0.43 TCGA-CG-5726-01 14 22315374 22315374 C T TRAV8-2 Silent p.D104D 0.48 TCGA-CG-5726-01 14 23397733 23397733 G A PRMT5 Nonsense_Mutation p.R68* 0.07 TCGA-CG-5726-01 14 23845057 23845058 TG - IL25 Frame_Shift_Del p.V171Afs*41 0.29 TCGA-CG-5726-01 14 23898199 23898199 C T MYH7 Missense_Mutation p.G458R 0.33 deleterious(0.01) probably_damaging(0.915) TCGA-CG-5726-01 14 24569425 24569425 A G PCK2 Intron 0.32 TCGA-CG-5726-01 14 24620520 24620520 G T RNF31 Missense_Mutation p.A557S 0.42 deleterious(0.01) probably_damaging(0.942) TCGA-CG-5726-01 14 24641958 24641958 C T REC8 Silent p.R31R 0.23 TCGA-CG-5726-01 14 24729846 24729847 - C TGM1 Frame_Shift_Ins p.S190Qfs*49 0.34 TCGA-CG-5726-01 14 24884675 24884675 G A NYNRIN Silent p.A1240A 0.32 TCGA-CG-5726-01 14 24898055 24898055 G - CBLN3 Frame_Shift_Del p.P69Lfs*35 0.31 TCGA-CG-5726-01 14 37132207 37132207 T C PAX9 Missense_Mutation p.I37T 0.08 deleterious(0.04) probably_damaging(0.995) TCGA-CG-5726-01 14 50116955 50116955 G A POLE2 Intron 0.06 TCGA-CG-5726-01 14 51224918 51224918 G A NIN Missense_Mutation p.H944Y 0.04 tolerated(0.48) possibly_damaging(0.736) TCGA-CG-5726-01 14 56755227 56755227 G A PELI2 Missense_Mutation p.E128K 0.31 tolerated(0.44) possibly_damaging(0.616) TCGA-CG-5726-01 14 57741440 57741440 A G AP5M1 Missense_Mutation p.N185D 0.31 tolerated(0.73) benign(0.021) TCGA-CG-5726-01 14 58678087 58678087 T A ACTR10 Missense_Mutation p.D140E 0.47 deleterious(0.01) probably_damaging(1) TCGA-CG-5726-01 14 58718839 58718839 C - PSMA3 Frame_Shift_Del p.T36Kfs*15 0.26 TCGA-CG-5726-01 14 60072086 60072086 T - RTN1 Frame_Shift_Del p.K704Nfs*5 0.32 TCGA-CG-5726-01 14 60097276 60097276 C T RTN1 Intron 0.31 TCGA-CG-5726-01 14 62248987 62248987 G A SNAPC1 Missense_Mutation p.R283H 0.40 deleterious(0.03) benign(0.133) TCGA-CG-5726-01 14 64522715 64522715 C T SYNE2 Silent p.T3266T 0.37 TCGA-CG-5726-01 14 67745753 67745753 T A MPP5 5'UTR 0.45 TCGA-CG-5726-01 14 67853996 67853996 G A PLEK2 3'UTR 0.16 TCGA-CG-5726-01 14 67940344 67940344 G A TMEM229B Silent p.N99N 0.27 TCGA-CG-5726-01 14 69521972 69521972 G A DCAF5 Silent p.A477A 0.32 TCGA-CG-5726-01 14 69890833 69890833 T - SLC39A9 Frame_Shift_Del p.L41Wfs*40 0.34 TCGA-CG-5726-01 14 72190527 72190527 G A SIPA1L1 Missense_Mutation p.A1479T 0.42 deleterious(0.01) probably_damaging(0.981) TCGA-CG-5726-01 14 73137952 73137952 C T DPF3 Silent p.T322T 0.48 TCGA-CG-5726-01 14 73425339 73425339 G A DCAF4 Silent p.T438T 0.35 TCGA-CG-5726-01 14 73727431 73727431 C A PAPLN Missense_Mutation p.P640H 0.33 deleterious(0.05) probably_damaging(0.994) TCGA-CG-5726-01 14 73789849 73789849 T - NUMB Frame_Shift_Del p.R64Dfs*2 0.41 TCGA-CG-5726-01 14 74371775 74371775 G A ZNF410 Missense_Mutation p.R318H 0.43 deleterious(0) probably_damaging(0.998) TCGA-CG-5726-01 14 75373815 75373815 C T RPS6KL1 Missense_Mutation p.E518K 0.48 deleterious(0) benign(0.196) TCGA-CG-5726-01 14 75509174 75509174 T G MLH3 Missense_Mutation p.Q1096P 0.05 deleterious(0) probably_damaging(0.996) TCGA-CG-5726-01 14 76249812 76249812 C A TTLL5 Silent p.S975S 0.37 TCGA-CG-5726-01 14 78063576 78063576 A G SPTLC2 Missense_Mutation p.W94R 0.41 tolerated(0.34) benign(0.03) TCGA-CG-5726-01 14 78174534 78174534 C T SLIRP Missense_Mutation p.P27L 0.40 deleterious(0) probably_damaging(0.995) TCGA-CG-5726-01 14 79181439 79181439 C T NRXN3 Silent p.C294C 0.36 TCGA-CG-5726-01 14 81744393 81744393 C T STON2 Missense_Mutation p.R421Q 0.41 tolerated(0.39) benign(0.002) TCGA-CG-5726-01 14 81744680 81744680 G T STON2 Silent p.P325P 0.36 TCGA-CG-5726-01 14 90783061 90783061 T - NRDE2 Frame_Shift_Del p.R90Gfs*69 0.18 TCGA-CG-5726-01 14 93142923 93142923 C A RIN3 Silent p.L813L 0.40 TCGA-CG-5726-01 14 93760502 93760502 A - BTBD7 Frame_Shift_Del p.R289Efs*19 0.34 TCGA-CG-5726-01 15 100649204 100649204 C T ADAMTS17 Missense_Mutation p.G669D 0.13 deleterious(0) possibly_damaging(0.798) TCGA-CG-5726-01 15 100692868 100692868 C T ADAMTS17 Silent p.E474E 0.09 TCGA-CG-5726-01 15 101565157 101565157 G T LRRK1 Missense_Mutation p.W739C 0.04 deleterious(0) probably_damaging(1) TCGA-CG-5726-01 15 20496756 20496756 T - CHEK2P2 RNA 0.15 TCGA-CG-5726-01 15 25310193 25310193 A - SNORD116-6 RNA 0.33 TCGA-CG-5726-01 15 25315599 25315599 A - SNORD116-8 RNA 0.19 TCGA-CG-5726-01 15 25344728 25344728 G C SNORD116-26 RNA 0.36 TCGA-CG-5726-01 15 25477382 25477382 A T SNORD115-33 3'Flank 0.35 TCGA-CG-5726-01 15 26828515 26828515 G - GABRB3 Frame_Shift_Del p.L170Wfs*66 0.23 TCGA-CG-5726-01 15 28443768 28443768 A T HERC2 Missense_Mutation p.Y2622N 0.37 probably_damaging(0.989) TCGA-CG-5726-01 15 28446681 28446681 G A HERC2 Missense_Mutation p.T2546M 0.38 possibly_damaging(0.846) TCGA-CG-5726-01 15 29092258 29092258 G A GOLGA6L7P RNA 0.26 TCGA-CG-5726-01 15 29406137 29406137 G A APBA2 Missense_Mutation p.R699H 0.42 deleterious(0.01) probably_damaging(0.976) TCGA-CG-5726-01 15 33359153 33359153 C T FMN1 Silent p.T311T 0.42 TCGA-CG-5726-01 15 34049794 34049794 C T RYR3 Missense_Mutation p.A2901V 0.18 benign(0.196) TCGA-CG-5726-01 15 34445168 34445168 T - KATNBL1 Frame_Shift_Del p.K87Nfs*77 0.32 TCGA-CG-5726-01 15 35182476 35182476 C T AQR Missense_Mutation p.R874H 0.13 deleterious(0) possibly_damaging(0.901) TCGA-CG-5726-01 15 38786607 38786607 C T RASGRP1 Silent p.L745L 0.33 TCGA-CG-5726-01 15 40396430 40396430 C T BMF Missense_Mutation p.R135Q 0.14 tolerated(0.39) benign(0.255) TCGA-CG-5726-01 15 41060090 41060090 T C DNAJC17 3'UTR 0.22 TCGA-CG-5726-01 15 41191717 41191717 G A VPS18 Missense_Mutation p.R234Q 0.43 tolerated(0.57) benign(0.001) TCGA-CG-5726-01 15 41192111 41192111 G A VPS18 Silent p.P365P 0.05 TCGA-CG-5726-01 15 41192635 41192635 G A VPS18 Missense_Mutation p.R540Q 0.35 deleterious(0.05) probably_damaging(0.928) TCGA-CG-5726-01 15 41770764 41770764 A - RTF1 Frame_Shift_Del p.N588Tfs*33 0.34 TCGA-CG-5726-01 15 42041783 42041783 T G MGA Missense_Mutation p.V1993G 0.38 tolerated_low_confidence(0.17) benign(0.001) TCGA-CG-5726-01 15 43819801 43819801 C - MAP1A Frame_Shift_Del p.P2045Qfs*25 0.41 TCGA-CG-5726-01 15 44087241 44087241 C T SERINC4 Missense_Mutation p.R505H 0.35 tolerated_low_confidence(0.58) benign(0) TCGA-CG-5726-01 15 44105302 44105302 C T MFAP1 Missense_Mutation p.R257Q 0.02 tolerated(0.54) benign(0.016) TCGA-CG-5726-01 15 45249094 45249094 T C C15orf43 Missense_Mutation p.V22A 0.10 tolerated(0.19) benign(0.015) TCGA-CG-5726-01 15 48054512 48054512 A - SEMA6D Frame_Shift_Del p.E220Sfs*8 0.18 TCGA-CG-5726-01 15 48634180 48634180 A - DUT Intron 0.31 TCGA-CG-5726-01 15 49030679 49030679 G A CEP152 Missense_Mutation p.R1634C 0.03 deleterious(0.04) benign(0.398) TCGA-CG-5726-01 15 50534778 50534778 C T HDC Silent p.E556E 0.38 TCGA-CG-5726-01 15 51504657 51504657 G A CYP19A1 Missense_Mutation p.R375C 0.37 deleterious(0) probably_damaging(1) TCGA-CG-5726-01 15 52244164 52244164 C T LEO1 Silent p.T496T 0.39 TCGA-CG-5726-01 15 52606371 52606371 T C MYO5A Silent p.P1788P 0.31 TCGA-CG-5726-01 15 54025295 54025295 G - WDR72 Frame_Shift_Del p.H18Tfs*7 0.15 TCGA-CG-5726-01 15 54586261 54586261 A C UNC13C Missense_Mutation p.L1329F 0.05 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CG-5726-01 15 62261614 62261616 TCT - VPS13C In_Frame_Del p.E931del 0.26 TCGA-CG-5726-01 15 63044602 63044602 T A TLN2 Nonsense_Mutation p.C1436* 0.41 TCGA-CG-5726-01 15 63053883 63053883 C A TLN2 Missense_Mutation p.L1548M 0.06 deleterious(0) benign(0.024) TCGA-CG-5726-01 15 63356328 63356328 G A TPM1 Intron 0.39 TCGA-CG-5726-01 15 64792134 64792134 C T ZNF609 Silent p.S172S 0.10 TCGA-CG-5726-01 15 65110214 65110214 C T PIF1 Silent p.G535G 0.55 TCGA-CG-5726-01 15 65621335 65621335 G - IGDCC3 Frame_Shift_Del p.P786Qfs*122 0.50 TCGA-CG-5726-01 15 69011561 69011561 G T CORO2B Missense_Mutation p.G387C 0.35 deleterious(0) probably_damaging(1) TCGA-CG-5726-01 15 69733281 69733281 C T KIF23 Missense_Mutation p.R748C 0.48 tolerated(0.13) benign(0.394) TCGA-CG-5726-01 15 72873215 72873215 T C ARIH1 Silent p.I453I 0.04 TCGA-CG-5726-01 15 74427347 74427347 C T ISLR2 3'UTR 0.21 TCGA-CG-5726-01 15 74467395 74467395 C A ISLR Missense_Mutation p.P66T 0.15 tolerated(0.56) benign(0.322) TCGA-CG-5726-01 15 74920982 74920982 A C CLK3 Missense_Mutation p.K536T 0.35 deleterious(0.02) benign(0.169) TCGA-CG-5726-01 15 75641567 75641567 C - NEIL1 Frame_Shift_Del p.R109Gfs*44 0.27 TCGA-CG-5726-01 15 75664509 75664509 C A SIN3A Missense_Mutation p.Q1211H 0.41 tolerated(0.32) benign(0.004) TCGA-CG-5726-01 15 77471360 77471360 C T PEAK1 Missense_Mutation p.R970H 0.14 deleterious(0.03) benign(0.062) TCGA-CG-5726-01 15 78894269 78894269 G A CHRNA3 Missense_Mutation p.R239C 0.44 deleterious(0) probably_damaging(1) TCGA-CG-5726-01 15 81176550 81176550 C T KIAA1199 Missense_Mutation p.R218C 0.15 deleterious(0) probably_damaging(0.999) TCGA-CG-5726-01 15 82444436 82444436 C T EFTUD1 Missense_Mutation p.E787K 0.36 tolerated(0.83) benign(0) TCGA-CG-5726-01 15 83451733 83451733 G A FSD2 Silent p.N260N 0.39 TCGA-CG-5726-01 15 83499687 83499687 C T WHAMM Missense_Mutation p.R660C 0.42 deleterious(0) benign(0.015) TCGA-CG-5726-01 15 85342439 85342439 C T ZNF592 Silent p.C1045C 0.45 TCGA-CG-5726-01 15 86312998 86312998 G A KLHL25 Missense_Mutation p.T15M 0.40 tolerated(0.14) benign(0.149) TCGA-CG-5726-01 15 89173290 89173290 T C AEN Missense_Mutation p.V248A 0.25 tolerated(0.08) benign(0.143) TCGA-CG-5726-01 15 99491899 99491899 C T IGF1R Silent p.G1228G 0.14 TCGA-CG-5726-01 16 1255203 1255203 C T CACNA1H Silent p.C847C 0.38 TCGA-CG-5726-01 16 1257402 1257402 C T CACNA1H Missense_Mutation p.A1012V 0.22 deleterious(0) probably_damaging(0.998) TCGA-CG-5726-01 16 1476183 1476183 G - C16orf91 Frame_Shift_Del p.P147Lfs*27 0.09 TCGA-CG-5726-01 16 15719582 15719582 G A KIAA0430 Missense_Mutation p.R534C 0.47 deleterious(0) probably_damaging(0.994) TCGA-CG-5726-01 16 16291913 16291913 C T ABCC6 Missense_Mutation p.V435I 0.32 tolerated(0.56) benign(0.002) TCGA-CG-5726-01 16 1842147 1842147 G - IGFALS Frame_Shift_Del p.P129Rfs*31 0.35 TCGA-CG-5726-01 16 19033117 19033117 G T TMC7 Missense_Mutation p.M209I 0.42 tolerated(0.75) benign(0) TCGA-CG-5726-01 16 20634788 20634788 C T ACSM1 3'UTR 0.48 TCGA-CG-5726-01 16 21109957 21109957 G A DNAH3 Missense_Mutation p.R834W 0.37 deleterious(0.01) benign(0.031) TCGA-CG-5726-01 16 21245076 21245076 C T ANKS4B Silent p.H6H 0.35 TCGA-CG-5726-01 16 2140354 2140354 C T PKD1 Missense_Mutation p.D4126N 0.32 probably_damaging(1) TCGA-CG-5726-01 16 21624076 21624076 G A METTL9 Silent p.S92S 0.40 TCGA-CG-5726-01 16 2164381 2164381 G A PKD1 Silent p.F881F 0.39 TCGA-CG-5726-01 16 22447127 22447127 C T RRN3P3 RNA 0.04 TCGA-CG-5726-01 16 22926941 22926941 G T HS3ST2 3'UTR 0.34 TCGA-CG-5726-01 16 23119471 23119471 C T USP31 Missense_Mutation p.G223R 0.37 deleterious(0) probably_damaging(1) TCGA-CG-5726-01 16 23769008 23769008 C T CHP2 3'UTR 0.40 TCGA-CG-5726-01 16 24582802 24582802 A T RBBP6 Missense_Mutation p.D1472V 0.06 deleterious_low_confidence(0) unknown(0) TCGA-CG-5726-01 16 24817979 24817979 C T TNRC6A Missense_Mutation p.P1472S 0.41 tolerated(0.06) benign(0.012) TCGA-CG-5726-01 16 25258441 25258441 C T ZKSCAN2 Missense_Mutation p.R359H 0.44 tolerated(0.14) probably_damaging(0.998) TCGA-CG-5726-01 16 28854161 28854161 C T TUFM 3'UTR 0.39 TCGA-CG-5726-01 16 28943679 28943679 C T CD19 Missense_Mutation p.A34V 0.26 tolerated(0.15) probably_damaging(0.971) TCGA-CG-5726-01 16 29820043 29820043 C T MAZ Silent p.V420V 0.41 TCGA-CG-5726-01 16 29888190 29888190 C T SEZ6L2 Missense_Mutation p.R664Q 0.46 tolerated(0.09) possibly_damaging(0.67) TCGA-CG-5726-01 16 29913086 29913086 G A ASPHD1 Missense_Mutation p.C265Y 0.32 deleterious(0) probably_damaging(0.993) TCGA-CG-5726-01 16 30749660 30749660 C T SRCAP Missense_Mutation p.R2767W 0.44 unknown(0) TCGA-CG-5726-01 16 3077501 3077501 G A THOC6 Silent p.K315K 0.49 TCGA-CG-5726-01 16 30779458 30779458 C - RNF40 Frame_Shift_Del p.N531Tfs*47 0.38 TCGA-CG-5726-01 16 30904250 30904250 C T BCL7C Missense_Mutation p.G64D 0.05 deleterious(0.04) benign(0.035) TCGA-CG-5726-01 16 30941646 30941646 G - FBXL19 Frame_Shift_Del p.R370Gfs*97 0.45 TCGA-CG-5726-01 16 31089231 31089231 C - ZNF646 Frame_Shift_Del p.S531Afs*5 0.32 TCGA-CG-5726-01 16 31154711 31154711 G A PRSS36 Missense_Mutation p.A351V 0.19 tolerated(0.2) benign(0.034) TCGA-CG-5726-01 16 3115769 3115769 T C IL32 Intron 0.42 TCGA-CG-5726-01 16 3115808 3115808 C T IL32 5'UTR 0.35 TCGA-CG-5726-01 16 31194048 31194049 - T FUS Intron 0.28 TCGA-CG-5726-01 16 3139421 3139421 G A ZSCAN10 Missense_Mutation p.R617C 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-CG-5726-01 16 3188482 3188482 C - ZNF213 Frame_Shift_Del p.P156Rfs*75 0.29 TCGA-CG-5726-01 16 3562425 3562425 A G CLUAP1 Missense_Mutation p.T148A 0.26 deleterious(0) benign(0.395) TCGA-CG-5726-01 16 426284 426285 - C TMEM8A Frame_Shift_Ins p.E359Gfs*119 0.48 TCGA-CG-5726-01 16 4292031 4292031 G A SRL Missense_Mutation p.S13L 0.19 tolerated_low_confidence(0.42) benign(0.011) TCGA-CG-5726-01 16 46715400 46715400 G A VPS35 Missense_Mutation p.S71F 0.36 tolerated(0.96) benign(0.078) TCGA-CG-5726-01 16 4924216 4924216 C T UBN1 Missense_Mutation p.S602L 0.15 tolerated(0.13) benign(0.022) TCGA-CG-5726-01 16 4925259 4925259 G A UBN1 Missense_Mutation p.V950I 0.54 tolerated(0.45) benign(0.002) TCGA-CG-5726-01 16 4943363 4943363 C T PPL Missense_Mutation p.D501N 0.41 tolerated(0.11) benign(0.185) TCGA-CG-5726-01 16 50349490 50349490 C T BRD7 3'Flank 0.16 TCGA-CG-5726-01 16 50357571 50357571 T A BRD7 Missense_Mutation p.Y457F 0.39 tolerated(0.25) probably_damaging(0.997) TCGA-CG-5726-01 16 51175249 51175249 G A SALL1 Missense_Mutation p.A295V 0.34 tolerated(0.16) benign(0.025) TCGA-CG-5726-01 16 54966406 54966406 G A IRX5 Intron 0.42 TCGA-CG-5726-01 16 55363164 55363164 C T IRX6 Missense_Mutation p.A425V 0.40 tolerated(0.08) benign(0.015) TCGA-CG-5726-01 16 55527106 55527106 C - MMP2 Frame_Shift_Del p.T460Rfs*38 0.35 TCGA-CG-5726-01 16 55690817 55690817 G A SLC6A2 Missense_Mutation p.G71S 0.34 deleterious(0) probably_damaging(1) TCGA-CG-5726-01 16 57181369 57181369 C T CPNE2 Intron 0.49 TCGA-CG-5726-01 16 603569 603569 G A CAPN15 3'UTR 0.30 TCGA-CG-5726-01 16 61687979 61687979 G A CDH8 Missense_Mutation p.R645W 0.43 deleterious(0) probably_damaging(0.998) TCGA-CG-5726-01 16 66426078 66426078 G A CDH5 Missense_Mutation p.V337I 0.42 tolerated(0.96) benign(0.025) TCGA-CG-5726-01 16 67183783 67183783 A - B3GNT9 Frame_Shift_Del p.F202Lfs*3 0.30 TCGA-CG-5726-01 16 67183811 67183811 A T B3GNT9 Missense_Mutation p.L193Q 0.21 deleterious(0) probably_damaging(1) TCGA-CG-5726-01 16 67322195 67322195 C A PLEKHG4 Missense_Mutation p.L1116M 0.06 tolerated(0.38) possibly_damaging(0.596) TCGA-CG-5726-01 16 67859956 67859956 G A TSNAXIP1 Missense_Mutation p.R320Q 0.52 deleterious(0.02) probably_damaging(0.999) TCGA-CG-5726-01 16 68289275 68289275 G A PLA2G15 Missense_Mutation p.R165Q 0.12 deleterious(0.05) benign(0.42) TCGA-CG-5726-01 16 68349807 68349807 A G PRMT7 5'UTR 0.24 TCGA-CG-5726-01 16 68597365 68597365 G T ZFP90 Silent p.S225S 0.40 TCGA-CG-5726-01 16 68732231 68732231 C T CDH3 Silent p.Y806Y 0.38 TCGA-CG-5726-01 16 69377541 69377541 G A TMED6 Silent p.D164D 0.40 TCGA-CG-5726-01 16 69390712 69390713 - G TERF2 3'UTR 0.26 TCGA-CG-5726-01 16 70400155 70400155 C T DDX19A Missense_Mutation p.R258C 0.30 deleterious(0) possibly_damaging(0.762) TCGA-CG-5726-01 16 70917932 70917932 G A HYDIN Silent p.D3290D 0.42 TCGA-CG-5726-01 16 71683907 71683907 A C PHLPP2 Missense_Mutation p.L953R 0.38 deleterious(0) probably_damaging(1) TCGA-CG-5726-01 16 72993370 72993370 G A ZFHX3 Silent p.S225S 0.32 TCGA-CG-5726-01 16 74706327 74706328 - GA MLKL 3'UTR 0.29 TCGA-CG-5726-01 16 75513508 75513508 C T CHST6 Silent p.A73A 0.32 TCGA-CG-5726-01 16 77401409 77401409 G T ADAMTS18 Missense_Mutation p.S236Y 0.31 tolerated(0.2) benign(0.001) TCGA-CG-5726-01 16 774189 774189 G - CCDC78 Frame_Shift_Del p.Q324Kfs*6 0.37 TCGA-CG-5726-01 16 774354 774354 G A CCDC78 Silent p.S307S 0.40 TCGA-CG-5726-01 16 81944273 81944273 G A PLCG2 Missense_Mutation p.E628K 0.38 tolerated(0.11) benign(0.074) TCGA-CG-5726-01 16 84096957 84096957 A G MBTPS1 Missense_Mutation p.V842A 0.44 tolerated(1) benign(0.006) TCGA-CG-5726-01 16 84270891 84270892 - C KCNG4 Frame_Shift_Ins p.R68Qfs*36 0.34 TCGA-CG-5726-01 16 84940242 84940242 G A CRISPLD2 Silent p.R496R 0.38 TCGA-CG-5726-01 16 8722842 8722842 C T METTL22 Missense_Mutation p.A130V 0.42 tolerated(0.06) benign(0.022) TCGA-CG-5726-01 16 87445308 87445308 A G ZCCHC14 Missense_Mutation p.F870L 0.34 tolerated(0.33) unknown(0) TCGA-CG-5726-01 16 87445883 87445883 G - ZCCHC14 Frame_Shift_Del p.T678Kfs*11 0.30 TCGA-CG-5726-01 16 89291990 89291990 C T ZNF778 Missense_Mutation p.A91V 0.08 tolerated(0.06) possibly_damaging(0.584) TCGA-CG-5726-01 16 90002143 90002143 C T TUBB3 Silent p.A428A 0.48 TCGA-CG-5726-01 17 10214487 10214487 G A MYH13 Missense_Mutation p.A1530V 0.35 tolerated(0.1) benign(0.001) TCGA-CG-5726-01 17 10427956 10427956 G A MYH2 Missense_Mutation p.R1668W 0.35 deleterious(0) probably_damaging(0.98) TCGA-CG-5726-01 17 10535238 10535238 G A MYH3 Silent p.A1684A 0.10 TCGA-CG-5726-01 17 10600694 10600694 A T SCO1 Missense_Mutation p.F44Y 0.37 tolerated_low_confidence(0.4) benign(0.063) TCGA-CG-5726-01 17 11775064 11775064 C - DNAH9 Frame_Shift_Del p.L3402Wfs*9 0.26 TCGA-CG-5726-01 17 1456410 1456410 C T PITPNA Missense_Mutation p.A29T 0.18 tolerated(0.15) probably_damaging(0.999) TCGA-CG-5726-01 17 15341260 15341260 A T CDRT4 Missense_Mutation p.S96T 0.16 tolerated(1) benign(0.044) TCGA-CG-5726-01 17 16221154 16221154 C T PIGL Missense_Mutation p.P198S 0.26 deleterious(0.02) possibly_damaging(0.774) TCGA-CG-5726-01 17 17062044 17062044 C T MPRIP Missense_Mutation p.R592C 0.30 deleterious(0) probably_damaging(0.999) TCGA-CG-5726-01 17 17772673 17772673 C T TOM1L2 Missense_Mutation p.V298I 0.30 tolerated(0.52) benign(0.045) TCGA-CG-5726-01 17 17900948 17900948 G A LRRC48 Silent p.S333S 0.43 TCGA-CG-5726-01 17 18023744 18023744 C T MYO15A Missense_Mutation p.R544C 0.54 possibly_damaging(0.689) TCGA-CG-5726-01 17 18631034 18631034 C T TRIM16L Missense_Mutation p.T55M 0.34 deleterious(0) benign(0.081) TCGA-CG-5726-01 17 19827816 19827816 T C AKAP10 Silent p.K552K 0.10 TCGA-CG-5726-01 17 20108263 20108263 A - SPECC1 Frame_Shift_Del p.N303Tfs*63 0.49 TCGA-CG-5726-01 17 2595920 2595920 C T CLUH Missense_Mutation p.R1089H 0.31 deleterious(0) probably_damaging(0.996) TCGA-CG-5726-01 17 26723121 26723121 A G SARM1 Intron 0.34 TCGA-CG-5726-01 17 26817568 26817568 G A SLC13A2 Missense_Mutation p.A159T 0.29 deleterious(0) probably_damaging(1) TCGA-CG-5726-01 17 26942696 26942696 C T KIAA0100 Missense_Mutation p.A2171T 0.38 tolerated(0.14) benign(0.407) TCGA-CG-5726-01 17 29111122 29111122 T - CRLF3 3'UTR 0.25 TCGA-CG-5726-01 17 29185289 29185289 A - ATAD5 Frame_Shift_Del p.K970Nfs*32 0.23 TCGA-CG-5726-01 17 30648240 30648240 C - RHBDL3 Frame_Shift_Del p.*405Efs*48 0.41 TCGA-CG-5726-01 17 30814938 30814938 G A CDK5R1 Silent p.Q100Q 0.13 TCGA-CG-5726-01 17 32614701 32614701 A G CCL11 Missense_Mutation p.K96E 0.17 deleterious(0.03) benign(0.062) TCGA-CG-5726-01 17 33690471 33690471 C T SLFN11 Missense_Mutation p.R119H 0.40 tolerated(0.14) benign(0.001) TCGA-CG-5726-01 17 33902725 33902725 T A PEX12 3'UTR 0.04 TCGA-CG-5726-01 17 34233554 34233554 G A AC015849.16 RNA 0.20 TCGA-CG-5726-01 17 34856778 34856778 G A MYO19 Missense_Mutation p.R757C 0.40 deleterious(0.01) benign(0.064) TCGA-CG-5726-01 17 34943636 34943636 C T GGNBP2 Silent p.P617P 0.35 TCGA-CG-5726-01 17 35300395 35300395 C - LHX1 Frame_Shift_Del p.E399Kfs*2 0.43 TCGA-CG-5726-01 17 35445936 35445936 T C ACACA Missense_Mutation p.H2322R 0.45 tolerated(1) benign(0) TCGA-CG-5726-01 17 35583264 35583264 C T ACACA Missense_Mutation p.R1119H 0.41 deleterious(0) probably_damaging(0.998) TCGA-CG-5726-01 17 35591892 35591892 T C ACACA Missense_Mutation p.I1082V 0.04 deleterious(0.02) benign(0.006) TCGA-CG-5726-01 17 3635754 3635754 A - ITGAE Frame_Shift_Del p.S888Lfs*16 0.11 TCGA-CG-5726-01 17 36482648 36482648 G A GPR179 Silent p.P2268P 0.39 TCGA-CG-5726-01 17 36912143 36912143 C T PSMB3 Missense_Mutation p.R66C 0.43 tolerated(0.06) benign(0.01) TCGA-CG-5726-01 17 3846007 3846007 G A ATP2A3 Missense_Mutation p.R480W 0.05 deleterious(0) possibly_damaging(0.742) TCGA-CG-5726-01 17 38546381 38546381 T - TOP2A Frame_Shift_Del p.R1435Gfs*13 0.37 TCGA-CG-5726-01 17 38936701 38936701 T C KRT27 Missense_Mutation p.N179D 0.17 deleterious(0.01) possibly_damaging(0.472) TCGA-CG-5726-01 17 38955765 38955765 A G KRT28 Silent p.P127P 0.02 TCGA-CG-5726-01 17 39020028 39020028 T A KRT12 Missense_Mutation p.N299I 0.17 deleterious(0) probably_damaging(0.98) TCGA-CG-5726-01 17 39279857 39279857 C T KRTAP4-12 Missense_Mutation p.R173Q 0.31 tolerated(0.79) unknown(0) TCGA-CG-5726-01 17 39642761 39642761 G - KRT36 Frame_Shift_Del p.P424Rfs*98 0.26 TCGA-CG-5726-01 17 40174474 40174474 G - NKIRAS2 Frame_Shift_Del p.V53Cfs*78 0.40 TCGA-CG-5726-01 17 40843980 40843980 G A CNTNAP1 Missense_Mutation p.R834H 0.41 tolerated(0.54) possibly_damaging(0.703) TCGA-CG-5726-01 17 40936583 40936583 C T WNK4 Missense_Mutation p.R386C 0.27 deleterious(0) unknown(0) TCGA-CG-5726-01 17 41063035 41063035 A T G6PC Silent p.G222G 0.40 TCGA-CG-5726-01 17 41143833 41143833 T - RUNDC1 3'UTR 0.22 TCGA-CG-5726-01 17 42636437 42636437 C T FZD2 Missense_Mutation p.R461C 0.28 deleterious(0) probably_damaging(1) TCGA-CG-5726-01 17 43545801 43545801 G A PLEKHM1 Missense_Mutation p.A361V 0.40 tolerated(0.14) benign(0.007) TCGA-CG-5726-01 17 4451551 4451551 A G MYBBP1A Silent p.G537G 0.38 TCGA-CG-5726-01 17 44770370 44770370 T G NSF Silent p.T349T 0.09 TCGA-CG-5726-01 17 45299152 45299152 C T MYL4 Missense_Mutation p.R140C 0.13 deleterious(0.03) probably_damaging(1) TCGA-CG-5726-01 17 45748109 45748109 C T KPNB1 Silent p.D486D 0.39 TCGA-CG-5726-01 17 45773476 45773476 A G TBKBP1 5'UTR 0.18 TCGA-CG-5726-01 17 4722789 4722789 G A PLD2 Missense_Mutation p.E792K 0.52 tolerated(0.1) benign(0.013) TCGA-CG-5726-01 17 48559584 48559584 C T RSAD1 Nonsense_Mutation p.Q203* 0.35 TCGA-CG-5726-01 17 4856581 4856581 G A ENO3 Silent p.V85V 0.39 TCGA-CG-5726-01 17 4876497 4876497 G A CAMTA2 Silent p.N774N 0.15 TCGA-CG-5726-01 17 4876881 4876881 G A CAMTA2 Missense_Mutation p.R757W 0.32 deleterious(0) probably_damaging(0.998) TCGA-CG-5726-01 17 4906103 4906103 G T KIF1C Missense_Mutation p.C229F 0.37 deleterious(0) benign(0.067) TCGA-CG-5726-01 17 55197710 55197710 T - AKAP1 3'UTR 0.40 TCGA-CG-5726-01 17 56291179 56291179 G A MKS1 Silent p.S232S 0.09 TCGA-CG-5726-01 17 56435160 56435160 A - RNF43 Frame_Shift_Del p.S661Pfs*39 0.25 TCGA-CG-5726-01 17 56536295 56536295 G T HSF5 Missense_Mutation p.N518K 0.37 tolerated(0.08) benign(0.003) TCGA-CG-5726-01 17 57050270 57050270 G A PPM1E Silent p.S398S 0.43 TCGA-CG-5726-01 17 57215235 57215235 T - SKA2 Intron 0.29 TCGA-CG-5726-01 17 58988001 58988001 C T BCAS3 Missense_Mutation p.R311W 0.05 deleterious(0.01) probably_damaging(0.965) TCGA-CG-5726-01 17 60558534 60558534 G A TLK2 Silent p.L16L 0.36 TCGA-CG-5726-01 17 61620997 61620997 T C KCNH6 Missense_Mutation p.F737L 0.33 tolerated(0.66) benign(0.001) TCGA-CG-5726-01 17 62025282 62025282 C T SCN4A Missense_Mutation p.A1096T 0.41 deleterious(0) probably_damaging(1) TCGA-CG-5726-01 17 62049998 62049998 G A SCN4A Silent p.Y68Y 0.47 TCGA-CG-5726-01 17 62291193 62291193 T C TEX2 Missense_Mutation p.T129A 0.16 tolerated_low_confidence(0.72) benign(0.011) TCGA-CG-5726-01 17 63554010 63554010 A G AXIN2 Silent p.L243L 0.07 TCGA-CG-5726-01 17 6374548 6374548 G A PITPNM3 Silent p.S519S 0.31 TCGA-CG-5726-01 17 65105425 65105425 A - HELZ Frame_Shift_Del p.F1432Lfs*17 0.37 TCGA-CG-5726-01 17 6538462 6538462 A G KIAA0753 5'UTR 0.36 TCGA-CG-5726-01 17 68171571 68171571 G A KCNJ2 Missense_Mutation p.A131T 0.35 tolerated(0.09) probably_damaging(0.968) TCGA-CG-5726-01 17 7221432 7221432 C T NEURL4 Missense_Mutation p.E1338K 0.12 deleterious(0.01) benign(0.158) TCGA-CG-5726-01 17 72227069 72227069 C T TTYH2 Silent p.N115N 0.36 TCGA-CG-5726-01 17 7306339 7306339 A T TMEM256 3'UTR 0.60 TCGA-CG-5726-01 17 76557880 76557880 G A DNAH17 Silent p.P584P 0.47 TCGA-CG-5726-01 17 7671512 7671512 C T DNAH2 Missense_Mutation p.R1290C 0.42 probably_damaging(0.953) TCGA-CG-5726-01 17 76851711 76851711 T - TIMP2 3'UTR 0.29 TCGA-CG-5726-01 17 78090907 78090907 C T GAA Missense_Mutation p.T777M 0.42 tolerated(0.11) benign(0.223) TCGA-CG-5726-01 17 78351588 78351588 G A RNF213 Missense_Mutation p.V4513M 0.41 probably_damaging(0.992) TCGA-CG-5726-01 17 78356807 78356807 A G RNF213 Silent p.S4669S 0.42 TCGA-CG-5726-01 17 78363150 78363150 A G RNF213 Missense_Mutation p.T5060A 0.06 benign(0.022) TCGA-CG-5726-01 17 79411726 79411726 C - RP11-1055B8.7 Frame_Shift_Del p.G851Afs*123 0.40 TCGA-CG-5726-01 17 80014934 80014934 G A GPS1 Silent p.P505P 0.24 TCGA-CG-5726-01 17 80039558 80039558 A G FASN Missense_Mutation p.F2109L 0.04 tolerated(0.07) benign(0.188) TCGA-CG-5726-01 17 80400208 80400208 C - HEXDC Frame_Shift_Del p.R502Afs*71 0.29 TCGA-CG-5726-01 17 80789385 80789385 G A ZNF750 Missense_Mutation p.P316S 0.04 tolerated(0.08) benign(0.241) TCGA-CG-5726-01 17 8135356 8135357 - G CTC1 Frame_Shift_Ins p.G751Rfs*40 0.31 TCGA-CG-5726-01 17 970393 970393 A G ABR Missense_Mutation p.V369A 0.17 tolerated(0.08) benign(0.174) TCGA-CG-5726-01 18 12325459 12325459 A T TUBB6 Missense_Mutation p.D224V 0.27 deleterious_low_confidence(0) benign(0.042) TCGA-CG-5726-01 18 19282375 19282375 G A ABHD3 Silent p.S137S 0.37 TCGA-CG-5726-01 18 19395628 19395628 G A MIB1 Missense_Mutation p.A511T 0.07 tolerated(0.29) benign(0.01) TCGA-CG-5726-01 18 22804681 22804681 G A ZNF521 Silent p.C1067C 0.49 TCGA-CG-5726-01 18 23713842 23713842 C T PSMA8 5'UTR 0.46 TCGA-CG-5726-01 18 24442217 24442217 C - AQP4 Frame_Shift_Del p.A126Pfs*39 0.36 TCGA-CG-5726-01 18 25543417 25543417 G A CDH2 Silent p.I806I 0.12 TCGA-CG-5726-01 18 29111033 29111033 T C DSG2 Silent p.S366S 0.05 TCGA-CG-5726-01 18 335158 335158 C T COLEC12 Missense_Mutation p.G467E 0.30 deleterious(0) unknown(0) TCGA-CG-5726-01 18 33718382 33718382 T C ELP2 Silent p.G146G 0.35 TCGA-CG-5726-01 18 42281711 42281711 A G SETBP1 Missense_Mutation p.K134E 0.12 deleterious(0) probably_damaging(0.991) TCGA-CG-5726-01 18 42532057 42532057 C T SETBP1 Missense_Mutation p.R918W 0.12 deleterious(0.04) probably_damaging(0.998) TCGA-CG-5726-01 18 43418864 43418864 G A SIGLEC15 Silent p.L226L 0.67 TCGA-CG-5726-01 18 47788456 47788456 T C CCDC11 Missense_Mutation p.Q68R 0.36 tolerated(0.32) benign(0.004) TCGA-CG-5726-01 18 47812478 47812478 C A CXXC1 Missense_Mutation p.G125W 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.795) TCGA-CG-5726-01 18 50976988 50976988 C T DCC Silent p.I1116I 0.29 TCGA-CG-5726-01 18 51729157 51729157 A G MBD2 Intron 0.12 TCGA-CG-5726-01 18 52262284 52262284 G T DYNAP Nonsense_Mutation p.G84* 0.03 TCGA-CG-5726-01 18 52899750 52899750 A T TCF4 Missense_Mutation p.S649T 0.12 tolerated(0.63) benign(0.082) TCGA-CG-5726-01 18 55020053 55020053 T C ST8SIA3 5'UTR 0.27 TCGA-CG-5726-01 18 55221591 55221591 C - FECH Frame_Shift_Del p.R333Gfs*9 0.11 TCGA-CG-5726-01 18 55319829 55319829 T C ATP8B1 Missense_Mutation p.I1050V 0.05 tolerated(0.36) benign(0.003) TCGA-CG-5726-01 18 56651281 56651281 G A ZNF532 Silent p.L1163L 0.13 TCGA-CG-5726-01 18 56651741 56651741 A - ZNF532 3'UTR 0.33 TCGA-CG-5726-01 18 65179868 65179869 - T DSEL Frame_Shift_Ins p.R670Tfs*7 0.29 TCGA-CG-5726-01 18 67671383 67671383 G A RTTN 3'UTR 0.21 TCGA-CG-5726-01 18 67836277 67836277 C T RTTN Missense_Mutation p.M501I 0.11 tolerated(0.09) benign(0.001) TCGA-CG-5726-01 18 77893685 77893685 C A ADNP2 Missense_Mutation p.P130H 0.06 deleterious(0.02) probably_damaging(0.957) TCGA-CG-5726-01 18 9263859 9263861 ACT - ANKRD12 In_Frame_Del p.L1913del 0.38 TCGA-CG-5726-01 19 10257153 10257153 A G DNMT1 Missense_Mutation p.I923T 0.36 tolerated(0.48) benign(0.004) TCGA-CG-5726-01 19 10415729 10415729 G A ZGLP1 3'UTR 0.12 TCGA-CG-5726-01 19 10479000 10479000 A G TYK2 Silent p.D96D 0.03 TCGA-CG-5726-01 19 10800327 10800327 G A ILF3 3'UTR 0.55 TCGA-CG-5726-01 19 11145784 11145784 A G SMARCA4 Silent p.S1382S 0.37 TCGA-CG-5726-01 19 11303705 11303705 C T KANK2 Missense_Mutation p.A351T 0.13 tolerated(0.17) probably_damaging(0.998) TCGA-CG-5726-01 19 11569310 11569310 G A ELAVL3 Silent p.R150R 0.40 TCGA-CG-5726-01 19 12759984 12759984 C - MAN2B1 Frame_Shift_Del p.G801Afs*4 0.30 TCGA-CG-5726-01 19 12772078 12772078 G A MAN2B1 Missense_Mutation p.A341V 0.17 deleterious(0.02) benign(0.184) TCGA-CG-5726-01 19 12883718 12883718 C T HOOK2 Silent p.A88A 0.28 TCGA-CG-5726-01 19 13010838 13010838 C T SYCE2 Missense_Mutation p.V198M 0.19 tolerated_low_confidence(0.26) benign(0.024) TCGA-CG-5726-01 19 13056717 13056717 A G RAD23A 5'UTR 0.19 TCGA-CG-5726-01 19 13985688 13985688 C T NANOS3 5'Flank 0.34 TCGA-CG-5726-01 19 14090271 14090271 G A RFX1 Silent p.H274H 0.41 TCGA-CG-5726-01 19 14273457 14273457 G A LPHN1 Missense_Mutation p.R391C 0.40 deleterious(0) probably_damaging(0.987) TCGA-CG-5726-01 19 15082660 15082660 G A SLC1A6 Missense_Mutation p.P78S 0.41 tolerated(0.38) benign(0.015) TCGA-CG-5726-01 19 15224480 15224480 C T SYDE1 Silent p.R638R 0.11 TCGA-CG-5726-01 19 15479059 15479059 G A AKAP8 Missense_Mutation p.R383C 0.53 deleterious(0) probably_damaging(0.939) TCGA-CG-5726-01 19 15582709 15582709 G A PGLYRP2 Silent p.I445I 0.21 TCGA-CG-5726-01 19 15640536 15640536 C T CYP4F22 Missense_Mutation p.A80V 0.14 tolerated(0.06) benign(0.059) TCGA-CG-5726-01 19 15905054 15905054 C A OR10H5 Missense_Mutation p.L66I 0.31 deleterious(0) probably_damaging(0.999) TCGA-CG-5726-01 19 16860457 16860457 C - NWD1 Frame_Shift_Del p.L337Wfs*14 0.29 TCGA-CG-5726-01 19 17036177 17036177 C T CPAMD8 Missense_Mutation p.V1173I 0.39 tolerated(0.13) benign(0.343) TCGA-CG-5726-01 19 17298813 17298813 C T MYO9B Missense_Mutation p.R883C 0.52 deleterious(0) probably_damaging(1) TCGA-CG-5726-01 19 18120836 18120836 C G ARRDC2 Missense_Mutation p.D279E 0.06 tolerated(1) benign(0.006) TCGA-CG-5726-01 19 18779651 18779651 G A KLHL26 Missense_Mutation p.D482N 0.40 tolerated(0.21) possibly_damaging(0.899) TCGA-CG-5726-01 19 19312663 19312665 CTT - RFXANK 3'UTR 0.54 TCGA-CG-5726-01 19 19388563 19388563 G A SUGP1 Silent p.G587G 0.17 TCGA-CG-5726-01 19 19654065 19654065 A G CILP2 Missense_Mutation p.N329S 0.45 deleterious(0) probably_damaging(0.999) TCGA-CG-5726-01 19 19741100 19741100 C T GMIP Missense_Mutation p.R862H 0.45 deleterious(0.02) probably_damaging(0.999) TCGA-CG-5726-01 19 23406702 23406702 T - ZNF724P Frame_Shift_Del p.G116Afs*22 0.24 TCGA-CG-5726-01 19 23836431 23836431 C T ZNF675 Missense_Mutation p.R435Q 0.34 tolerated(0.59) benign(0.088) TCGA-CG-5726-01 19 2717194 2717194 C T DIRAS1 3'UTR 0.23 TCGA-CG-5726-01 19 29698468 29698468 A G UQCRFS1 Missense_Mutation p.V271A 0.13 deleterious(0) benign(0.441) TCGA-CG-5726-01 19 33693789 33693789 C T LRP3 Missense_Mutation p.R53W 0.38 deleterious(0) probably_damaging(0.986) TCGA-CG-5726-01 19 34263795 34263795 C A CHST8 Missense_Mutation p.L368M 0.10 deleterious(0) probably_damaging(0.967) TCGA-CG-5726-01 19 34292185 34292185 C T KCTD15 Silent p.I60I 0.37 TCGA-CG-5726-01 19 34791601 34791601 G A KIAA0355 Missense_Mutation p.D75N 0.42 deleterious_low_confidence(0.04) probably_damaging(0.982) TCGA-CG-5726-01 19 36034433 36034433 G A GAPDHS Intron 0.36 TCGA-CG-5726-01 19 36049337 36049337 C T ATP4A Missense_Mutation p.G476D 0.62 deleterious(0.03) probably_damaging(0.962) TCGA-CG-5726-01 19 3619215 3619215 G A CACTIN Missense_Mutation p.R304W 0.41 deleterious(0) probably_damaging(1) TCGA-CG-5726-01 19 36215889 36215889 G T KMT2B Splice_Site p.X1144_splice 0.36 TCGA-CG-5726-01 19 36223476 36223476 C T KMT2B Missense_Mutation p.A2009V 0.75 benign(0.239) TCGA-CG-5726-01 19 36430917 36430917 C T LRFN3 Missense_Mutation p.A197V 0.33 deleterious(0.02) benign(0.105) TCGA-CG-5726-01 19 36616721 36616721 G A TBCB 3'UTR 0.43 TCGA-CG-5726-01 19 37488248 37488248 G A ZNF568 Missense_Mutation p.R488Q 0.30 tolerated(1) probably_damaging(0.998) TCGA-CG-5726-01 19 37647242 37647242 T C CTC-454I21.3 Missense_Mutation p.R18G 0.38 deleterious(0.03) possibly_damaging(0.686) TCGA-CG-5726-01 19 37676764 37676764 A G ZNF585B Missense_Mutation p.F559L 0.33 deleterious(0.02) probably_damaging(0.997) TCGA-CG-5726-01 19 38597247 38597247 C A SIPA1L3 Silent p.T700T 0.36 TCGA-CG-5726-01 19 39281375 39281375 G A LGALS7B Missense_Mutation p.A48T 0.06 deleterious(0.01) possibly_damaging(0.891) TCGA-CG-5726-01 19 39690989 39690989 C T NCCRP1 Silent p.F184F 0.40 TCGA-CG-5726-01 19 40321029 40321029 C A DYRK1B Missense_Mutation p.G120C 0.46 deleterious(0) probably_damaging(0.998) TCGA-CG-5726-01 19 40321086 40321086 C T DYRK1B Missense_Mutation p.V101M 0.36 deleterious(0.02) possibly_damaging(0.667) TCGA-CG-5726-01 19 40321350 40321350 C T DYRK1B Missense_Mutation p.R46H 0.37 deleterious(0.04) benign(0.046) TCGA-CG-5726-01 19 40434017 40434017 G A FCGBP Silent p.P84P 0.41 TCGA-CG-5726-01 19 40541678 40541678 C T ZNF780B Missense_Mutation p.C363Y 0.05 deleterious(0.01) probably_damaging(0.99) TCGA-CG-5726-01 19 40900414 40900414 G A PRX Missense_Mutation p.S1282L 0.31 deleterious(0) possibly_damaging(0.519) TCGA-CG-5726-01 19 41066342 41066342 C - SPTBN4 Intron 0.58 TCGA-CG-5726-01 19 41081489 41081489 G T SPTBN4 3'UTR 0.33 TCGA-CG-5726-01 19 41113279 41113279 G A LTBP4 Missense_Mutation p.V401M 0.41 deleterious(0) probably_damaging(0.992) TCGA-CG-5726-01 19 4154961 4154961 C A CREB3L3 Missense_Mutation p.D31E 0.42 deleterious(0.03) probably_damaging(0.991) TCGA-CG-5726-01 19 41627521 41627521 G A CYP2F1 Missense_Mutation p.E215K 0.41 deleterious(0.04) benign(0.067) TCGA-CG-5726-01 19 41893465 41893465 C T EXOSC5 Missense_Mutation p.R190Q 0.27 tolerated(0.46) benign(0.001) TCGA-CG-5726-01 19 42406477 42406479 GAG - ARHGEF1 In_Frame_Del p.E506del 0.46 TCGA-CG-5726-01 19 42473602 42473602 A T ATP1A3 Missense_Mutation p.S904R 0.29 deleterious(0) possibly_damaging(0.876) TCGA-CG-5726-01 19 42946996 42946996 G A CXCL17 5'UTR 0.31 TCGA-CG-5726-01 19 43576030 43576030 G A PSG2 Silent p.F262F 0.38 TCGA-CG-5726-01 19 4511671 4511671 G A PLIN4 Silent p.S753S 0.34 TCGA-CG-5726-01 19 4523866 4523866 C T PLIN5 Missense_Mutation p.A356T 0.46 tolerated(0.21) benign(0.024) TCGA-CG-5726-01 19 45989049 45989049 T G RTN2 Splice_Site p.X519_splice 0.09 TCGA-CG-5726-01 19 46087972 46087972 C T OPA3 Silent p.R17R 0.28 TCGA-CG-5726-01 19 46128026 46128026 G A EML2 Silent p.G465G 0.12 TCGA-CG-5726-01 19 46190926 46190926 C T SNRPD2 Missense_Mutation p.G81D 0.06 tolerated(0.05) benign(0.028) TCGA-CG-5726-01 19 46283130 46283130 G - DMPK Frame_Shift_Del p.P63Qfs*7 0.20 TCGA-CG-5726-01 19 47197162 47197162 C T PRKD2 Missense_Mutation p.A516T 0.33 tolerated(0.3) possibly_damaging(0.825) TCGA-CG-5726-01 19 47424841 47424841 C - ARHGAP35 Frame_Shift_Del p.R972Gfs*55 0.31 TCGA-CG-5726-01 19 47597337 47597337 G A ZC3H4 Missense_Mutation p.R128C 0.34 probably_damaging(0.991) TCGA-CG-5726-01 19 48254791 48254791 C T GLTSCR2 Missense_Mutation p.P205S 0.13 deleterious(0.05) benign(0.41) TCGA-CG-5726-01 19 4852236 4852236 C T PLIN3 Silent p.T142T 0.37 TCGA-CG-5726-01 19 48558274 48558274 G A PLA2G4C Silent p.R440R 0.17 TCGA-CG-5726-01 19 48654587 48654587 G T LIG1 Missense_Mutation p.T159N 0.36 tolerated(0.2) benign(0.265) TCGA-CG-5726-01 19 49494706 49494706 C T GYS1 Silent p.A51A 0.14 TCGA-CG-5726-01 19 49510289 49510289 C A RUVBL2 Missense_Mutation p.L94M 0.48 deleterious(0.01) possibly_damaging(0.508) TCGA-CG-5726-01 19 49878158 49878158 G A DKKL1 Missense_Mutation p.R201Q 0.37 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CG-5726-01 19 51021955 51021955 G A LRRC4B Missense_Mutation p.R339C 0.44 deleterious(0) probably_damaging(0.951) TCGA-CG-5726-01 19 51628989 51628989 C T SIGLEC9 Missense_Mutation p.S186F 0.10 deleterious(0.03) benign(0.119) TCGA-CG-5726-01 19 52033142 52033142 T C SIGLEC6 Missense_Mutation p.H283R 0.31 tolerated(1) benign(0.001) TCGA-CG-5726-01 19 5212459 5212459 G A PTPRS Missense_Mutation p.T1553M 0.36 tolerated(0.37) probably_damaging(1) TCGA-CG-5726-01 19 52618234 52618234 C T ZNF616 Missense_Mutation p.R728Q 0.46 tolerated(0.84) benign(0.018) TCGA-CG-5726-01 19 52826122 52826122 T A ZNF480 3'UTR 0.45 TCGA-CG-5726-01 19 53304072 53304072 T C ZNF28 Silent p.L342L 0.37 TCGA-CG-5726-01 19 54416192 54416192 T C CACNG7 Missense_Mutation p.M36T 0.31 tolerated(0.53) benign(0.012) TCGA-CG-5726-01 19 54445306 54445306 C T CACNG7 Missense_Mutation p.S196F 0.25 deleterious(0) probably_damaging(0.968) TCGA-CG-5726-01 19 54466537 54466537 G A CACNG8 Silent p.T47T 0.81 TCGA-CG-5726-01 19 549785 549785 G A GZMM Silent p.S256S 0.06 TCGA-CG-5726-01 19 55354348 55354348 A G KIR2DS4 Missense_Mutation p.H223R 0.33 deleterious_low_confidence(0) benign(0.043) TCGA-CG-5726-01 19 55597494 55597494 C A EPS8L1 Silent p.P528P 0.10 TCGA-CG-5726-01 19 56153895 56153895 G A ZNF580 Silent p.R7R 0.26 TCGA-CG-5726-01 19 56160396 56160396 C T CCDC106 5'UTR 0.32 TCGA-CG-5726-01 19 56459621 56459621 G A NLRP8 Missense_Mutation p.R118H 0.30 tolerated(0.1) benign(0.002) TCGA-CG-5726-01 19 57133281 57133281 C T ZNF71 Missense_Mutation p.T209M 0.31 deleterious(0) probably_damaging(0.998) TCGA-CG-5726-01 19 57646387 57646387 T - ZIM3 Frame_Shift_Del p.T440Pfs*98 0.29 TCGA-CG-5726-01 19 57955692 57955692 T C ZNF749 Silent p.S392S 0.13 TCGA-CG-5726-01 19 58005549 58005549 C T ZNF419 3'UTR 0.44 TCGA-CG-5726-01 19 58199066 58199066 T C ZNF551 Missense_Mutation p.Y475H 0.39 tolerated(0.09) probably_damaging(0.998) TCGA-CG-5726-01 19 58320135 58320135 C A ZNF552 Missense_Mutation p.G166V 0.38 tolerated(0.05) benign(0.432) TCGA-CG-5726-01 19 58439171 58439171 C T ZNF418 Silent p.P126P 0.06 TCGA-CG-5726-01 19 58565294 58565294 C A ZSCAN1 Missense_Mutation p.Q368K 0.42 tolerated(0.94) benign(0.019) TCGA-CG-5726-01 19 58797158 58797158 A G ZNF8 Missense_Mutation p.I48V 0.40 tolerated(0.07) benign(0.006) TCGA-CG-5726-01 19 6742993 6742993 G T TRIP10 Missense_Mutation p.Q71H 0.04 tolerated(0.11) benign(0.258) TCGA-CG-5726-01 19 7621376 7621376 C T PNPLA6 Missense_Mutation p.T1054M 0.34 deleterious(0) probably_damaging(0.998) TCGA-CG-5726-01 19 7692684 7692684 C T XAB2 Missense_Mutation p.R85H 0.29 tolerated(0.55) benign(0.028) TCGA-CG-5726-01 19 8193949 8193949 G - FBN3 Frame_Shift_Del p.G754Afs*23 0.50 TCGA-CG-5726-01 19 9071463 9071463 G - MUC16 Frame_Shift_Del p.P5328Lfs*11 0.12 TCGA-CG-5726-01 1 100584676 100584676 T - SASS6 Frame_Shift_Del p.K189Nfs*4 0.34 TCGA-CG-5726-01 1 100614483 100614483 A - LRRC39 3'UTR 0.23 TCGA-CG-5726-01 1 10207065 10207065 C T UBE4B Silent p.D836D 0.47 TCGA-CG-5726-01 1 104160223 104160223 G A AMY2A Missense_Mutation p.G54E 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-CG-5726-01 1 10510294 10510294 C A CORT Missense_Mutation p.P5H 0.12 deleterious_low_confidence(0.03) unknown(0) TCGA-CG-5726-01 1 10659294 10659294 G T PEX14 Splice_Site p.X57_splice 0.28 TCGA-CG-5726-01 1 109813153 109813153 C T CELSR2 Missense_Mutation p.R2472C 0.05 deleterious(0) probably_damaging(0.998) TCGA-CG-5726-01 1 110199841 110199841 T C GSTM4 Silent p.P39P 0.30 TCGA-CG-5726-01 1 11086923 11086923 T G MASP2 3'UTR 0.36 TCGA-CG-5726-01 1 110889132 110889132 A - RBM15 3'UTR 0.38 TCGA-CG-5726-01 1 111147202 111147202 T A KCNA2 Missense_Mutation p.Y68F 0.36 tolerated(0.34) probably_damaging(0.993) TCGA-CG-5726-01 1 111216300 111216300 A G KCNA3 Missense_Mutation p.S378P 0.36 deleterious(0) probably_damaging(1) TCGA-CG-5726-01 1 111216362 111216362 G A KCNA3 Missense_Mutation p.A357V 0.42 deleterious(0.03) possibly_damaging(0.893) TCGA-CG-5726-01 1 111667451 111667451 T C DRAM2 Silent p.E84E 0.40 TCGA-CG-5726-01 1 114308955 114308955 A G RSBN1 Missense_Mutation p.F686L 0.42 deleterious(0) probably_damaging(0.979) TCGA-CG-5726-01 1 114454003 114454003 C T DCLRE1B Silent p.S263S 0.42 TCGA-CG-5726-01 1 114516066 114516066 C T HIPK1 Nonsense_Mutation p.R1189* 0.41 TCGA-CG-5726-01 1 11580806 11580806 C T PTCHD2 Missense_Mutation p.R755W 0.44 deleterious(0) probably_damaging(0.999) TCGA-CG-5726-01 1 11728893 11728893 C T FBXO6 Nonsense_Mutation p.R60* 0.40 TCGA-CG-5726-01 1 118537093 118537093 T - SPAG17 Frame_Shift_Del p.K1705Rfs*45 0.36 TCGA-CG-5726-01 1 120298076 120298076 G A HMGCS2 Silent p.Y387Y 0.41 TCGA-CG-5726-01 1 12202468 12202468 T C TNFRSF8 Silent p.H556H 0.56 TCGA-CG-5726-01 1 13497928 13497928 C A PRAMEF16 Missense_Mutation p.L409M 0.29 tolerated(0.12) probably_damaging(0.987) TCGA-CG-5726-01 1 145762320 145762320 A - PDZK1 Frame_Shift_Del p.E501Nfs*24 0.29 TCGA-CG-5726-01 1 145765043 145765043 T C GPR89A Silent p.A448A 0.25 TCGA-CG-5726-01 1 147090982 147090982 C - BCL9 Frame_Shift_Del p.T343Hfs*53 0.32 TCGA-CG-5726-01 1 147230513 147230513 T - GJA5 Frame_Shift_Del p.K278Nfs*106 0.29 TCGA-CG-5726-01 1 149884981 149884981 C - SV2A Frame_Shift_Del p.E138Rfs*39 0.40 TCGA-CG-5726-01 1 150131589 150131589 C T PLEKHO1 Silent p.S367S 0.23 TCGA-CG-5726-01 1 150526845 150526846 - C ADAMTSL4 Frame_Shift_Ins p.E382* 0.44 TCGA-CG-5726-01 1 150528719 150528719 C T ADAMTSL4 Missense_Mutation p.R485C 0.38 deleterious(0) probably_damaging(0.967) TCGA-CG-5726-01 1 151219440 151219440 A G PIP5K1A Missense_Mutation p.H562R 0.13 deleterious_low_confidence(0.01) benign(0.075) TCGA-CG-5726-01 1 151380627 151380628 AG - POGZ Frame_Shift_Del p.L775Vfs*4 0.30 TCGA-CG-5726-01 1 151538676 151538676 C A TUFT1 Missense_Mutation p.P151H 0.43 tolerated(0.05) possibly_damaging(0.834) TCGA-CG-5726-01 1 152286203 152286203 C T FLG Missense_Mutation p.G387S 0.04 possibly_damaging(0.85) TCGA-CG-5726-01 1 153520175 153520175 G A S100A3 Missense_Mutation p.P97S 0.42 tolerated(0.14) benign(0.212) TCGA-CG-5726-01 1 153580513 153580513 G A S100A16 Missense_Mutation p.R39C 0.46 deleterious(0) possibly_damaging(0.889) TCGA-CG-5726-01 1 153732081 153732081 T C INTS3 Missense_Mutation p.M410T 0.33 deleterious(0) probably_damaging(0.974) TCGA-CG-5726-01 1 154302881 154302881 G T ATP8B2 Missense_Mutation p.R47M 0.22 deleterious(0) probably_damaging(0.919) TCGA-CG-5726-01 1 154924376 154924376 C A PBXIP1 Missense_Mutation p.G25C 0.43 deleterious(0) probably_damaging(1) TCGA-CG-5726-01 1 155209427 155209427 T C GBA Missense_Mutation p.K145R 0.37 tolerated(1) benign(0.004) TCGA-CG-5726-01 1 155233743 155233743 G A CLK2 Missense_Mutation p.R438W 0.14 deleterious(0.02) probably_damaging(0.979) TCGA-CG-5726-01 1 155234303 155234303 C A CLK2 Missense_Mutation p.G367C 0.19 deleterious(0) probably_damaging(1) TCGA-CG-5726-01 1 156286984 156286984 C A CCT3 Missense_Mutation p.R316L 0.42 deleterious(0) possibly_damaging(0.71) TCGA-CG-5726-01 1 156694023 156694023 G - ISG20L2 Frame_Shift_Del p.L289Sfs*15 0.29 TCGA-CG-5726-01 1 156707482 156707482 G T MRPL24 Missense_Mutation p.P157H 0.11 deleterious(0) probably_damaging(0.996) TCGA-CG-5726-01 1 157666960 157666960 T - FCRL3 Frame_Shift_Del p.R272Gfs*3 0.32 TCGA-CG-5726-01 1 15771162 15771162 G A CTRC Silent p.T185T 0.36 TCGA-CG-5726-01 1 158549613 158549613 T C OR10X1 Missense_Mutation p.K26R 0.04 tolerated(0.17) benign(0.118) TCGA-CG-5726-01 1 158639307 158639307 C T SPTA1 Missense_Mutation p.R575H 0.36 tolerated(0.08) probably_damaging(0.982) TCGA-CG-5726-01 1 158653211 158653211 T - SPTA1 Frame_Shift_Del p.T114Qfs*20 0.15 TCGA-CG-5726-01 1 158911972 158911972 A G PYHIN1 Missense_Mutation p.K262R 0.41 deleterious(0.01) probably_damaging(0.99) TCGA-CG-5726-01 1 159284045 159284045 G T OR10J3 Silent p.V135V 0.06 TCGA-CG-5726-01 1 160851038 160851038 G T ITLN1 Missense_Mutation p.P157H 0.30 deleterious(0) probably_damaging(0.994) TCGA-CG-5726-01 1 16091539 16091539 C T FBLIM1 Missense_Mutation p.R21C 0.43 deleterious(0) probably_damaging(0.989) TCGA-CG-5726-01 1 161199504 161199504 G A NR1I3 3'UTR 0.41 TCGA-CG-5726-01 1 161695678 161695678 C T FCRLB Silent p.R125R 0.19 TCGA-CG-5726-01 1 161697204 161697204 G A FCRLB Missense_Mutation p.G345S 0.16 tolerated(0.8) benign(0.001) TCGA-CG-5726-01 1 161697453 161697453 G - FCRLB 3'UTR 0.43 TCGA-CG-5726-01 1 16200878 16200878 A G SPEN Intron 0.36 TCGA-CG-5726-01 1 16203108 16203108 C T SPEN Silent p.S272S 0.46 TCGA-CG-5726-01 1 16458656 16458656 C T EPHA2 Missense_Mutation p.R743H 0.13 deleterious(0) probably_damaging(1) TCGA-CG-5726-01 1 166827446 166827446 C T TADA1 Silent p.Q255Q 0.37 TCGA-CG-5726-01 1 167038309 167038309 C T GPA33 Missense_Mutation p.V89I 0.41 tolerated(0.36) possibly_damaging(0.867) TCGA-CG-5726-01 1 168054869 168054869 C - GPR161 Frame_Shift_Del p.G517Afs*13 0.44 TCGA-CG-5726-01 1 169498918 169498918 A G F5 Missense_Mutation p.Y1783H 0.04 deleterious(0) probably_damaging(1) TCGA-CG-5726-01 1 169771865 169771868 AAGT - C1orf112 Splice_Site p.X57_splice 0.09 TCGA-CG-5726-01 1 169822809 169822809 A - C1orf112 3'UTR 0.27 TCGA-CG-5726-01 1 17030539 17030539 T A ESPNP RNA 0.22 TCGA-CG-5726-01 1 17266547 17266547 C T CROCC Silent p.R589R 0.37 TCGA-CG-5726-01 1 173881070 173881070 C T SERPINC1 Missense_Mutation p.R164Q 0.38 deleterious(0.01) possibly_damaging(0.72) TCGA-CG-5726-01 1 174418476 174418476 T - GPR52 3'UTR 0.32 TCGA-CG-5726-01 1 176762724 176762724 C - PAPPA2 Frame_Shift_Del p.S1686Vfs*4 0.37 TCGA-CG-5726-01 1 177198951 177198951 G T BRINP2 5'UTR 0.41 TCGA-CG-5726-01 1 179063240 179063240 C T TOR3A Silent p.G277G 0.29 TCGA-CG-5726-01 1 179852002 179852002 T C TOR1AIP1 Missense_Mutation p.M122T 0.42 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-CG-5726-01 1 181702035 181702035 G A CACNA1E Missense_Mutation p.R938Q 0.10 tolerated(0.2) benign(0) TCGA-CG-5726-01 1 182026619 182026619 G A ZNF648 Missense_Mutation p.A176V 0.06 tolerated(0.26) benign(0.005) TCGA-CG-5726-01 1 182638780 182638780 G A RGS8 Intron 0.48 TCGA-CG-5726-01 1 185986140 185986140 T C HMCN1 Missense_Mutation p.V1746A 0.13 possibly_damaging(0.9) TCGA-CG-5726-01 1 186083133 186083133 C - HMCN1 Frame_Shift_Del p.Q3720Rfs*4 0.30 TCGA-CG-5726-01 1 186114659 186114659 G T HMCN1 Silent p.G4797G 0.39 TCGA-CG-5726-01 1 186325512 186325512 C T TPR Silent p.Q598Q 0.46 TCGA-CG-5726-01 1 18661448 18661448 G A IGSF21 Missense_Mutation p.R123H 0.06 deleterious(0) probably_damaging(0.966) TCGA-CG-5726-01 1 186862228 186862228 A - PLA2G4A Frame_Shift_Del p.N68Tfs*24 0.32 TCGA-CG-5726-01 1 18809556 18809556 G A KLHDC7A Missense_Mutation p.R694H 0.33 deleterious(0) probably_damaging(1) TCGA-CG-5726-01 1 196759035 196759037 AAG - CFHR3 Intron 0.25 TCGA-CG-5726-01 1 200377574 200377574 G A ZNF281 Silent p.T420T 0.41 TCGA-CG-5726-01 1 201750154 201750154 A C NAV1 Silent p.S460S 0.07 TCGA-CG-5726-01 1 202092489 202092489 T C GPR37L1 Missense_Mutation p.I133T 0.40 deleterious(0.01) benign(0.003) TCGA-CG-5726-01 1 202300886 202300886 A - UBE2T 3'UTR 0.34 TCGA-CG-5726-01 1 203044731 203044731 G A PPFIA4 Silent p.A634A 0.48 TCGA-CG-5726-01 1 205039153 205039153 G A CNTN2 Missense_Mutation p.E799K 0.43 tolerated(0.12) possibly_damaging(0.547) TCGA-CG-5726-01 1 206821441 206821441 A - DYRK3 Frame_Shift_Del p.N302Ifs*35 0.29 TCGA-CG-5726-01 1 21048381 21048381 G A SH2D5 Silent p.Y392Y 0.31 TCGA-CG-5726-01 1 211469082 211469082 T A RCOR3 Missense_Mutation p.F335Y 0.35 tolerated(0.82) benign(0.006) TCGA-CG-5726-01 1 211842578 211842578 G T NEK2 Silent p.R288R 0.04 TCGA-CG-5726-01 1 212180670 212180670 C T INTS7 Silent p.P226P 0.39 TCGA-CG-5726-01 1 214170355 214170355 T A PROX1 Missense_Mutation p.D159E 0.43 deleterious(0.02) probably_damaging(0.983) TCGA-CG-5726-01 1 214705800 214705800 C T PTPN14 Intron 0.29 TCGA-CG-5726-01 1 220324483 220324483 A - RAB3GAP2 3'UTR 0.27 TCGA-CG-5726-01 1 223177115 223177115 C T DISP1 Silent p.G792G 0.44 TCGA-CG-5726-01 1 2234752 2234752 G A SKI Missense_Mutation p.R375H 0.41 deleterious(0.02) probably_damaging(0.987) TCGA-CG-5726-01 1 226127115 226127115 G A LEFTY2 Missense_Mutation p.A228V 0.31 tolerated(0.21) benign(0.112) TCGA-CG-5726-01 1 227152949 227152949 C T ADCK3 Silent p.N142N 0.42 TCGA-CG-5726-01 1 227843652 227843652 G A ZNF678 3'UTR 0.25 TCGA-CG-5726-01 1 228033279 228033279 C A PRSS38 Missense_Mutation p.A231D 0.05 deleterious(0) probably_damaging(1) TCGA-CG-5726-01 1 228109597 228109597 G A WNT9A Silent p.G240G 0.17 TCGA-CG-5726-01 1 228466970 228466970 G A OBSCN Silent p.V2836V 0.14 TCGA-CG-5726-01 1 228504492 228504492 C T OBSCN Silent p.S5413S 0.43 TCGA-CG-5726-01 1 228528927 228528927 C A OBSCN Silent p.V6900V 0.19 TCGA-CG-5726-01 1 228550350 228550350 C T OBSCN Silent p.G7202G 0.19 TCGA-CG-5726-01 1 22927816 22927816 G A EPHA8 Missense_Mutation p.R918Q 0.13 tolerated(0.23) probably_damaging(0.995) TCGA-CG-5726-01 1 229635518 229635518 C T NUP133 Nonsense_Mutation p.W187* 0.05 TCGA-CG-5726-01 1 229683388 229683388 A G ABCB10 Missense_Mutation p.V260A 0.37 tolerated(0.23) benign(0.14) TCGA-CG-5726-01 1 231374652 231374652 T C C1orf131 Missense_Mutation p.H134R 0.04 tolerated(0.17) benign(0.098) TCGA-CG-5726-01 1 23233308 23233308 G A EPHB2 Missense_Mutation p.R666Q 0.26 deleterious(0.01) probably_damaging(0.981) TCGA-CG-5726-01 1 232626679 232626679 G A SIPA1L2 Nonsense_Mutation p.R583* 0.04 TCGA-CG-5726-01 1 233807425 233807425 A - KCNK1 3'UTR 0.33 TCGA-CG-5726-01 1 235887386 235887386 G T LYST Missense_Mutation p.A3086D 0.14 deleterious(0) probably_damaging(0.997) TCGA-CG-5726-01 1 236144978 236144978 G A NID1 Nonsense_Mutation p.Q1054* 0.48 TCGA-CG-5726-01 1 238090546 238090546 G A RP11-193H5.1 RNA 0.29 TCGA-CG-5726-01 1 23954331 23954331 G A MDS2 5'UTR 0.43 TCGA-CG-5726-01 1 243328299 243328300 - T CEP170 Frame_Shift_Ins p.M988Nfs*20 0.09 TCGA-CG-5726-01 1 243349251 243349251 T G CEP170 Missense_Mutation p.S466R 0.38 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-CG-5726-01 1 247319909 247319909 T - ZNF124 Frame_Shift_Del p.T277Lfs*31 0.15 TCGA-CG-5726-01 1 247588075 247588075 G A NLRP3 Missense_Mutation p.V444I 0.37 tolerated(0.45) benign(0.001) TCGA-CG-5726-01 1 248039478 248039478 C A TRIM58 Missense_Mutation p.A383D 0.34 deleterious(0.02) probably_damaging(0.992) TCGA-CG-5726-01 1 248039617 248039617 T C TRIM58 Silent p.D429D 0.36 TCGA-CG-5726-01 1 248112583 248112583 C T OR2L8 Silent p.L142L 0.14 TCGA-CG-5726-01 1 248525057 248525058 - T OR2T4 Frame_Shift_Ins p.C60Lfs*25 0.30 TCGA-CG-5726-01 1 248637306 248637306 A G OR2T3 Missense_Mutation p.I219V 0.78 tolerated(0.15) benign(0.022) TCGA-CG-5726-01 1 24978984 24978984 A - SRRM1 Frame_Shift_Del p.N264Ifs*82 0.31 TCGA-CG-5726-01 1 2522446 2522446 G A MMEL1 Nonsense_Mutation p.R775* 0.33 TCGA-CG-5726-01 1 25611170 25611170 G A RHD Silent p.A85A 0.20 TCGA-CG-5726-01 1 26104628 26104629 - G MAN1C1 Frame_Shift_Ins p.L433Afs*67 0.35 TCGA-CG-5726-01 1 27057936 27057937 - C ARID1A Frame_Shift_Ins p.Y551Lfs*72 0.42 TCGA-CG-5726-01 1 27682908 27682908 C T MAP3K6 Missense_Mutation p.R1203Q 0.41 tolerated(0.3) benign(0.002) TCGA-CG-5726-01 1 28176659 28176659 G A PPP1R8 Missense_Mutation p.R253H 0.39 tolerated(0.4) benign(0.002) TCGA-CG-5726-01 1 28476914 28476914 G T PTAFR Missense_Mutation p.L207M 0.37 deleterious(0.04) benign(0.301) TCGA-CG-5726-01 1 29644308 29644308 G A PTPRU Missense_Mutation p.A1198T 0.36 deleterious(0) benign(0.283) TCGA-CG-5726-01 1 32745227 32745227 C - LCK Intron 0.38 TCGA-CG-5726-01 1 3328339 3328339 G A PRDM16 Silent p.P526P 0.40 TCGA-CG-5726-01 1 3394493 3394493 T C ARHGEF16 Silent p.L510L 0.05 TCGA-CG-5726-01 1 34088992 34088992 T C CSMD2 Silent p.V1860V 0.41 TCGA-CG-5726-01 1 34174924 34174924 G A CSMD2 Intron 0.42 TCGA-CG-5726-01 1 3428619 3428619 G A MEGF6 Silent p.C309C 0.14 TCGA-CG-5726-01 1 35453279 35453279 G A ZMYM6 Missense_Mutation p.T1135I 0.42 tolerated(0.21) possibly_damaging(0.894) TCGA-CG-5726-01 1 35474381 35474381 A G ZMYM6 Missense_Mutation p.M546T 0.14 tolerated(0.13) benign(0.012) TCGA-CG-5726-01 1 35485090 35485090 T - ZMYM6 Frame_Shift_Del p.M98Cfs*49 0.31 TCGA-CG-5726-01 1 36935323 36935323 G - CSF3R Frame_Shift_Del p.S469Afs*22 0.32 TCGA-CG-5726-01 1 3703715 3703715 G A LRRC47 Missense_Mutation p.R259C 0.31 deleterious(0) probably_damaging(0.971) TCGA-CG-5726-01 1 40150278 40150278 C T HPCAL4 5'UTR 0.12 TCGA-CG-5726-01 1 40704624 40704624 T - RLF Frame_Shift_Del p.Y1419Ifs*6 0.18 TCGA-CG-5726-01 1 42049803 42049803 G A HIVEP3 Silent p.C222C 0.06 TCGA-CG-5726-01 1 42050512 42050512 C T HIVEP3 5'UTR 0.07 TCGA-CG-5726-01 1 43162317 43162317 C T YBX1 Missense_Mutation p.A120V 0.31 tolerated(0.15) benign(0.013) TCGA-CG-5726-01 1 43215906 43215906 C T LEPRE1 Silent p.T557T 0.45 TCGA-CG-5726-01 1 43828871 43828872 TA - CDC20 3'UTR 0.09 TCGA-CG-5726-01 1 44436283 44436283 C T DPH2 Missense_Mutation p.P55S 0.05 deleterious(0.02) probably_damaging(0.918) TCGA-CG-5726-01 1 44685744 44685744 C T DMAP1 Silent p.S369S 0.40 TCGA-CG-5726-01 1 45216216 45216216 G A KIF2C Missense_Mutation p.R140H 0.56 tolerated(0.08) possibly_damaging(0.582) TCGA-CG-5726-01 1 45268997 45268997 C - PLK3 Frame_Shift_Del p.N338Tfs*35 0.32 TCGA-CG-5726-01 1 45293142 45293142 G A PTCH2 Missense_Mutation p.A768V 0.49 tolerated(0.4) benign(0.069) TCGA-CG-5726-01 1 45476257 45476257 T C HECTD3 Missense_Mutation p.Q164R 0.32 tolerated(0.08) benign(0.067) TCGA-CG-5726-01 1 47152515 47152515 T - EFCAB14 Frame_Shift_Del p.R339Dfs*14 0.17 TCGA-CG-5726-01 1 48764290 48764291 - T SPATA6 3'UTR 0.37 TCGA-CG-5726-01 1 51323599 51323599 A G FAF1 Splice_Site p.X38_splice 0.07 TCGA-CG-5726-01 1 53546514 53546514 G A PODN Missense_Mutation p.D591N 0.49 tolerated(0.54) benign(0.013) TCGA-CG-5726-01 1 53925671 53925671 G A DMRTB1 Missense_Mutation p.R182Q 0.25 tolerated(0.19) benign(0.054) TCGA-CG-5726-01 1 54506485 54506485 C T TMEM59 Silent p.A217A 0.33 TCGA-CG-5726-01 1 55081757 55081757 G - FAM151A Frame_Shift_Del p.T118Lfs*43 0.50 TCGA-CG-5726-01 1 59248342 59248342 G T JUN Missense_Mutation p.A134E 0.34 tolerated(0.31) possibly_damaging(0.838) TCGA-CG-5726-01 1 6021934 6021934 G A NPHP4 Missense_Mutation p.A198V 0.30 tolerated(1) benign(0.002) TCGA-CG-5726-01 1 6257785 6257785 T - RPL22 Frame_Shift_Del p.K15Rfs*5 0.35 TCGA-CG-5726-01 1 62740642 62740642 T C KANK4 Missense_Mutation p.D45G 0.06 deleterious(0) probably_damaging(0.999) TCGA-CG-5726-01 1 63789164 63789164 G A FOXD3 Silent p.S145S 0.38 TCGA-CG-5726-01 1 63991248 63991248 C T EFCAB7 Missense_Mutation p.A2V 0.27 tolerated_low_confidence(0.05) possibly_damaging(0.634) TCGA-CG-5726-01 1 64608333 64608333 G A ROR1 Missense_Mutation p.D392N 0.25 tolerated(0.43) benign(0.005) TCGA-CG-5726-01 1 65243369 65243369 C T RAVER2 Missense_Mutation p.S127F 0.38 deleterious(0.02) benign(0.073) TCGA-CG-5726-01 1 6688663 6688663 G A THAP3 Missense_Mutation p.R60Q 0.44 tolerated(0.19) benign(0.249) TCGA-CG-5726-01 1 6688716 6688716 G A THAP3 Missense_Mutation p.V78M 0.55 deleterious(0) probably_damaging(0.997) TCGA-CG-5726-01 1 6704674 6704674 G A DNAJC11 Silent p.S347S 0.40 TCGA-CG-5726-01 1 75681465 75681465 A C SLC44A5 Missense_Mutation p.F568V 0.36 deleterious(0.03) possibly_damaging(0.862) TCGA-CG-5726-01 1 76253656 76253656 T C RABGGTB Intron 0.31 TCGA-CG-5726-01 1 78426155 78426155 G T FUBP1 Missense_Mutation p.P457H 0.33 tolerated(0.26) unknown(0) TCGA-CG-5726-01 1 78958519 78958519 T - PTGFR Frame_Shift_Del p.S33Qfs*2 0.38 TCGA-CG-5726-01 1 8420552 8420552 G - RERE Frame_Shift_Del p.L1007* 0.33 TCGA-CG-5726-01 1 85115559 85115559 T - SSX2IP Intron 0.28 TCGA-CG-5726-01 1 87188335 87188337 AGG - SH3GLB1 In_Frame_Del p.G153del 0.26 TCGA-CG-5726-01 1 8921375 8921375 T C ENO1 3'UTR 0.12 TCGA-CG-5726-01 1 89426867 89426867 T A CCBL2 Missense_Mutation p.N257I 0.39 tolerated(0.3) possibly_damaging(0.739) TCGA-CG-5726-01 1 89449327 89449327 G A RBMXL1 Silent p.D61D 0.04 TCGA-CG-5726-01 1 89478880 89478880 C T GBP3 Missense_Mutation p.V286I 0.28 tolerated(0.08) benign(0.222) TCGA-CG-5726-01 1 900458 900458 G A KLHL17 Missense_Mutation p.A606T 0.16 tolerated(0.23) benign(0.032) TCGA-CG-5726-01 1 91382293 91382293 A - ZNF644 3'UTR 0.36 TCGA-CG-5726-01 1 9305054 9305054 G A H6PD Missense_Mutation p.E21K 0.18 tolerated(0.18) benign(0.005) TCGA-CG-5726-01 1 9305488 9305488 C T H6PD Silent p.G165G 0.40 TCGA-CG-5726-01 1 97279050 97279050 T - PTBP2 3'UTR 0.22 TCGA-CG-5726-01 1 989347 989347 G A AGRN Missense_Mutation p.V1956M 0.29 deleterious(0) probably_damaging(0.93) TCGA-CG-5726-01 20 13279916 13279916 C T ISM1 Missense_Mutation p.T402M 0.54 tolerated(0.08) probably_damaging(1) TCGA-CG-5726-01 20 1424269 1424269 G A NSFL1C 3'UTR 0.18 TCGA-CG-5726-01 20 1559137 1559137 C T RP4-576H24.4 Missense_Mutation p.E93K 0.03 deleterious(0) benign(0.155) TCGA-CG-5726-01 20 15948247 15948247 T C MACROD2 Silent p.H319H 0.04 TCGA-CG-5726-01 20 17639446 17639446 T - RRBP1 Intron 0.25 TCGA-CG-5726-01 20 18143418 18143418 G A CSRP2BP Silent p.A500A 0.25 TCGA-CG-5726-01 20 19646521 19646521 A - SLC24A3 Frame_Shift_Del p.V236Ffs*7 0.24 TCGA-CG-5726-01 20 2308960 2308960 G C TGM3 Missense_Mutation p.V428L 0.24 deleterious(0) benign(0.18) TCGA-CG-5726-01 20 23346237 23346237 G A GZF1 Missense_Mutation p.R406Q 0.33 deleterious(0.02) benign(0.327) TCGA-CG-5726-01 20 23431071 23431071 C A CST11 3'UTR 0.28 TCGA-CG-5726-01 20 25059284 25059285 - A VSX1 Intron 0.23 TCGA-CG-5726-01 20 25300924 25300924 G A ABHD12 Silent p.N151N 0.30 TCGA-CG-5726-01 20 25456719 25456719 G A NINL Missense_Mutation p.R1070W 0.23 tolerated(0.21) benign(0.001) TCGA-CG-5726-01 20 2777036 2777036 G A CPXM1 Missense_Mutation p.R367W 0.27 deleterious(0) probably_damaging(1) TCGA-CG-5726-01 20 30432967 30432967 C T FOXS1 Missense_Mutation p.A127T 0.27 tolerated(0.35) benign(0.003) TCGA-CG-5726-01 20 30784139 30784139 T - PLAGL2 3'UTR 0.51 TCGA-CG-5726-01 20 31671314 31671314 G A BPIFB4 Missense_Mutation p.R104Q 0.33 tolerated_low_confidence(0.06) benign(0.009) TCGA-CG-5726-01 20 3212106 3212106 C T SLC4A11 Missense_Mutation p.R316H 0.12 tolerated(0.19) benign(0.139) TCGA-CG-5726-01 20 3215425 3215425 A - SLC4A11 Frame_Shift_Del p.F111Lfs*32 0.33 TCGA-CG-5726-01 20 32336863 32336863 C - ZNF341 Frame_Shift_Del p.P160Hfs*7 0.26 TCGA-CG-5726-01 20 32441411 32441411 C T CHMP4B 3'UTR 0.13 TCGA-CG-5726-01 20 3329232 3329232 G A C20orf194 Silent p.F243F 0.26 TCGA-CG-5726-01 20 33330511 33330511 T C NCOA6 Silent p.Q1183Q 0.29 TCGA-CG-5726-01 20 34207646 34207646 C - SPAG4 Frame_Shift_Del p.R354Afs*46 0.28 TCGA-CG-5726-01 20 35521646 35521646 C T TLDC2 3'UTR 0.50 TCGA-CG-5726-01 20 35742483 35742484 - T MROH8 Frame_Shift_Ins p.N894Kfs*4 0.17 TCGA-CG-5726-01 20 35783525 35783525 G A MROH8 Missense_Mutation p.R366W 0.27 deleterious(0.03) benign(0.086) TCGA-CG-5726-01 20 36627613 36627613 G - TTI1 Frame_Shift_Del p.L924Wfs*37 0.10 TCGA-CG-5726-01 20 36888920 36888920 G A KIAA1755 5'UTR 0.32 TCGA-CG-5726-01 20 3782594 3782594 C A CDC25B Nonsense_Mutation p.C315* 0.16 TCGA-CG-5726-01 20 3904078 3904078 A G PANK2 3'UTR 0.09 TCGA-CG-5726-01 20 40122502 40122502 C A CHD6 Missense_Mutation p.G392V 0.20 deleterious(0.01) probably_damaging(0.971) TCGA-CG-5726-01 20 40143482 40143482 G A CHD6 Missense_Mutation p.R222W 0.25 deleterious(0.01) possibly_damaging(0.462) TCGA-CG-5726-01 20 41408874 41408874 G A PTPRT Silent p.V184V 0.21 TCGA-CG-5726-01 20 42143950 42143952 CTC - L3MBTL1 In_Frame_Del p.S204del 0.25 TCGA-CG-5726-01 20 43703810 43703810 A C STK4 Missense_Mutation p.N486T 0.12 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-CG-5726-01 20 43723366 43723366 G A KCNS1 3'UTR 0.12 TCGA-CG-5726-01 20 44045332 44045335 TGAG - PIGT Splice_Site p.X122_splice 0.33 TCGA-CG-5726-01 20 44050026 44050026 C - PIGT Frame_Shift_Del p.P348Qfs*11 0.33 TCGA-CG-5726-01 20 47865238 47865238 G A ZNFX1 Silent p.C1441C 0.25 TCGA-CG-5726-01 20 49508350 49508350 G A ADNP Silent p.D967D 0.28 TCGA-CG-5726-01 20 49510942 49510943 - T ADNP Frame_Shift_Ins p.N103Kfs*2 0.25 TCGA-CG-5726-01 20 49620572 49620572 G A KCNG1 3'UTR 0.25 TCGA-CG-5726-01 20 50245609 50245609 A G ATP9A Silent p.D557D 0.27 TCGA-CG-5726-01 20 50768713 50768713 A T ZFP64 Missense_Mutation p.L673H 0.08 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-CG-5726-01 20 52188288 52188288 T - ZNF217 Frame_Shift_Del p.T1048Lfs*59 0.22 TCGA-CG-5726-01 20 54972482 54972482 C T CSTF1 Missense_Mutation p.A130V 0.26 deleterious(0.02) possibly_damaging(0.589) TCGA-CG-5726-01 20 57485424 57485424 C T GNAS Missense_Mutation p.R979W 0.07 deleterious(0) probably_damaging(0.998) TCGA-CG-5726-01 20 58514315 58514315 G A PPP1R3D Silent p.R224R 0.34 TCGA-CG-5726-01 20 5903916 5903916 C T CHGB Nonsense_Mutation p.Q376* 0.25 TCGA-CG-5726-01 20 60499487 60499487 A G CDH4 Missense_Mutation p.Y575C 0.08 tolerated(0.05) probably_damaging(0.928) TCGA-CG-5726-01 20 60511828 60511828 C - CDH4 Frame_Shift_Del p.Y862Mfs*22 0.28 TCGA-CG-5726-01 20 60551204 60551205 - C TAF4 3'UTR 0.28 TCGA-CG-5726-01 20 60791877 60791877 C T HRH3 Missense_Mutation p.E175K 0.28 deleterious(0.02) probably_damaging(0.996) TCGA-CG-5726-01 20 61431073 61431073 C - MRGBP 3'UTR 0.21 TCGA-CG-5726-01 20 61833652 61833652 T A YTHDF1 Missense_Mutation p.E547V 0.29 deleterious(0.01) probably_damaging(0.972) TCGA-CG-5726-01 20 61845261 61845261 A C YTHDF1 Silent p.V29V 0.28 TCGA-CG-5726-01 20 61981128 61981128 C T CHRNA4 Silent p.T545T 0.44 TCGA-CG-5726-01 20 62223462 62223462 C A GMEB2 Missense_Mutation p.G289C 0.12 deleterious(0) probably_damaging(0.994) TCGA-CG-5726-01 20 62321727 62321729 CTT - RTEL1 In_Frame_Del p.F808del 0.36 TCGA-CG-5726-01 20 62407140 62407140 G A ZBTB46 Silent p.R371R 0.31 TCGA-CG-5726-01 20 62559804 62559804 C T DNAJC5 Missense_Mutation p.R36W 0.18 deleterious(0) probably_damaging(0.999) TCGA-CG-5726-01 20 62871228 62871228 G C MYT1 Missense_Mutation p.S1070T 0.21 probably_damaging(0.993) TCGA-CG-5726-01 20 8755367 8755367 G A PLCB1 Splice_Site p.X1037_splice 0.07 TCGA-CG-5726-01 21 15591970 15591970 A C RBM11 Missense_Mutation p.E61D 0.09 deleterious(0.03) probably_damaging(0.996) TCGA-CG-5726-01 21 22664432 22664432 G A NCAM2 Missense_Mutation p.A164T 0.47 tolerated(0.54) benign(0.104) TCGA-CG-5726-01 21 28296534 28296534 C T ADAMTS5 Silent p.P877P 0.28 TCGA-CG-5726-01 21 30380870 30380870 G A RWDD2B Missense_Mutation p.A47V 0.07 tolerated(0.24) benign(0.003) TCGA-CG-5726-01 21 30426572 30426572 A - USP16 3'UTR 0.31 TCGA-CG-5726-01 21 33044468 33044468 G A SCAF4 Silent p.G896G 0.07 TCGA-CG-5726-01 21 33641271 33641271 G T MIS18A 3'UTR 0.41 TCGA-CG-5726-01 21 35138206 35138206 A - ITSN1 Frame_Shift_Del p.K273Nfs*16 0.30 TCGA-CG-5726-01 21 38555103 38555103 C T TTC3 Missense_Mutation p.L1549F 0.42 tolerated(0.7) possibly_damaging(0.536) TCGA-CG-5726-01 21 45479047 45479047 G A TRAPPC10 Missense_Mutation p.E248K 0.39 deleterious(0) probably_damaging(0.999) TCGA-CG-5726-01 21 45745850 45745850 G A PFKL Missense_Mutation p.A666T 0.29 tolerated(0.5) benign(0.269) TCGA-CG-5726-01 21 46011198 46011198 G A KRTAP10-6 3'UTR 0.68 TCGA-CG-5726-01 21 46703299 46703299 T C POFUT2 Missense_Mutation p.R176G 0.05 deleterious(0) possibly_damaging(0.872) TCGA-CG-5726-01 21 47808787 47808787 G A PCNT Missense_Mutation p.A1199T 0.65 possibly_damaging(0.811) TCGA-CG-5726-01 21 47953472 47953472 C A DIP2A Silent p.G447G 0.47 TCGA-CG-5726-01 22 17590410 17590410 C T IL17RA Silent p.G767G 0.40 TCGA-CG-5726-01 22 18613670 18613670 C T TUBA8 Missense_Mutation p.R373W 0.43 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CG-5726-01 22 19808240 19808240 C A GNB1L Missense_Mutation p.Q45H 0.45 tolerated(0.12) possibly_damaging(0.796) TCGA-CG-5726-01 22 19882652 19882652 C T TXNRD2 Intron 0.39 TCGA-CG-5726-01 22 21097019 21097019 C A PI4KA Missense_Mutation p.G1164C 0.33 tolerated(0.09) benign(0.009) TCGA-CG-5726-01 22 21348214 21348216 AGG - LZTR1 In_Frame_Del p.E454del 0.39 TCGA-CG-5726-01 22 23438056 23438056 C T GNAZ Silent p.S58S 0.35 TCGA-CG-5726-01 22 23631789 23631789 G A BCR Silent p.P896P 0.35 TCGA-CG-5726-01 22 24219426 24219426 A C SLC2A11 Intron 0.49 TCGA-CG-5726-01 22 24718011 24718011 C T SPECC1L Missense_Mutation p.P355S 0.34 tolerated(0.36) benign(0.437) TCGA-CG-5726-01 22 26830109 26830109 G A ASPHD2 Silent p.T176T 0.41 TCGA-CG-5726-01 22 29115460 29115460 A - CHEK2 Frame_Shift_Del p.F245Lfs*3 0.26 TCGA-CG-5726-01 22 30951194 30951194 G A GAL3ST1 Missense_Mutation p.R340C 0.38 deleterious(0) possibly_damaging(0.846) TCGA-CG-5726-01 22 31672811 31672811 C T LIMK2 Silent p.C582C 0.47 TCGA-CG-5726-01 22 31822637 31822637 T C DRG1 Silent p.I250I 0.37 TCGA-CG-5726-01 22 31979888 31979888 C T SFI1 Missense_Mutation p.R426W 0.15 deleterious(0.03) benign(0) TCGA-CG-5726-01 22 32302250 32302250 C T DEPDC5 Missense_Mutation p.R1518W 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-CG-5726-01 22 32797740 32797740 T C RTCB Missense_Mutation p.N164S 0.46 tolerated(1) benign(0.002) TCGA-CG-5726-01 22 33402720 33402720 C T SYN3 5'UTR 0.38 TCGA-CG-5726-01 22 36236338 36236338 C - RBFOX2 Intron 0.33 TCGA-CG-5726-01 22 36537601 36537601 C T APOL3 Missense_Mutation p.E286K 0.41 tolerated(0.46) benign(0.035) TCGA-CG-5726-01 22 37319309 37319309 C T CSF2RB Missense_Mutation p.R34C 0.36 deleterious(0) possibly_damaging(0.798) TCGA-CG-5726-01 22 37325759 37325759 G A CSF2RB Missense_Mutation p.A210T 0.38 deleterious(0) probably_damaging(0.966) TCGA-CG-5726-01 22 37870636 37870636 G A MFNG Silent p.L243L 0.16 TCGA-CG-5726-01 22 38897211 38897211 T - DDX17 Frame_Shift_Del p.K121Sfs*4 0.33 TCGA-CG-5726-01 22 39219123 39219123 T C NPTXR Missense_Mutation p.K415E 0.35 deleterious(0) possibly_damaging(0.492) TCGA-CG-5726-01 22 39621845 39621845 C T PDGFB Silent p.T203T 0.36 TCGA-CG-5726-01 22 43088985 43088985 G A A4GALT Missense_Mutation p.R325W 0.44 deleterious(0) possibly_damaging(0.79) TCGA-CG-5726-01 22 43219661 43219661 C T ARFGAP3 Splice_Site p.X224_splice 0.26 TCGA-CG-5726-01 22 44645466 44645466 G A KIAA1644 3'UTR 0.33 TCGA-CG-5726-01 22 46929835 46929835 G A CELSR1 Missense_Mutation p.S1078L 0.40 deleterious(0) probably_damaging(0.97) TCGA-CG-5726-01 22 50886875 50886875 T G SBF1 Splice_Site p.X1718_splice 0.35 TCGA-CG-5726-01 22 50941800 50941800 G A LMF2 3'UTR 0.43 TCGA-CG-5726-01 22 51115076 51115076 C A SHANK3 Silent p.A98A 0.24 TCGA-CG-5726-01 22 51237135 51237135 C T RPL23AP82 RNA 0.26 TCGA-CG-5726-01 2 100022521 100022521 A G REV1 Missense_Mutation p.C888R 0.32 tolerated(0.21) benign(0.04) TCGA-CG-5726-01 2 100029342 100029342 T G REV1 Missense_Mutation p.T675P 0.04 tolerated(0.31) benign(0.045) TCGA-CG-5726-01 2 100038096 100038096 C T REV1 Missense_Mutation p.A566T 0.39 deleterious(0) probably_damaging(1) TCGA-CG-5726-01 2 100343570 100343571 - TG AFF3 Frame_Shift_Ins p.E379Qfs*20 0.10 TCGA-CG-5726-01 2 10130834 10130834 G A GRHL1 Missense_Mutation p.R427Q 0.14 deleterious(0) probably_damaging(0.999) TCGA-CG-5726-01 2 103095325 103095325 G A SLC9A4 Missense_Mutation p.G95D 0.27 tolerated(0.4) possibly_damaging(0.505) TCGA-CG-5726-01 2 103322334 103322334 C A SLC9A2 Silent p.S669S 0.33 TCGA-CG-5726-01 2 108625008 108625008 G T SLC5A7 Missense_Mutation p.C328F 0.41 deleterious(0.02) probably_damaging(0.954) TCGA-CG-5726-01 2 11273484 11273484 G A C2orf50 Silent p.G8G 0.33 TCGA-CG-5726-01 2 113081979 113081979 C T ZC3H6 Nonsense_Mutation p.Q531* 0.42 TCGA-CG-5726-01 2 113877668 113877668 A T IL1RN Silent p.G12G 0.15 TCGA-CG-5726-01 2 1161257 1161257 C T SNTG2 Silent p.G145G 0.13 TCGA-CG-5726-01 2 11944622 11944622 G A LPIN1 Missense_Mutation p.R745H 0.38 deleterious(0) probably_damaging(0.999) TCGA-CG-5726-01 2 127944844 127944844 G T CYP27C1 3'UTR 0.34 TCGA-CG-5726-01 2 128015230 128015230 G A ERCC3 Missense_Mutation p.S764L 0.38 deleterious(0.03) benign(0.001) TCGA-CG-5726-01 2 128096511 128096511 T - MAP3K2 Frame_Shift_Del p.K40Nfs*29 0.37 TCGA-CG-5726-01 2 130951418 130951418 C T TUBA3E Missense_Mutation p.A333T 0.40 deleterious_low_confidence(0.04) benign(0.049) TCGA-CG-5726-01 2 136546022 136546022 C T LCT Missense_Mutation p.V1886I 0.04 tolerated(0.28) benign(0.003) TCGA-CG-5726-01 2 140990876 140990876 G A LRP1B Missense_Mutation p.P4560L 0.46 possibly_damaging(0.726) TCGA-CG-5726-01 2 148683686 148683686 A - ACVR2A Frame_Shift_Del p.K437Rfs*5 0.38 TCGA-CG-5726-01 2 149226053 149226053 C T MBD5 Silent p.L181L 0.04 TCGA-CG-5726-01 2 149861973 149861973 A - KIF5C Frame_Shift_Del p.S816Vfs*68 0.40 TCGA-CG-5726-01 2 152293790 152293790 T - RIF1 Frame_Shift_Del p.S472Pfs*34 0.18 TCGA-CG-5726-01 2 152319553 152319553 A - RIF1 Frame_Shift_Del p.A1176Lfs*2 0.24 TCGA-CG-5726-01 2 152342260 152342260 A C NEB 3'UTR 0.08 TCGA-CG-5726-01 2 153512706 153512706 T - PRPF40A 3'UTR 0.56 TCGA-CG-5726-01 2 155566208 155566208 T C KCNJ3 Missense_Mutation p.S266P 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-CG-5726-01 2 159077217 159077217 T - CCDC148 Frame_Shift_Del p.K420Nfs*15 0.24 TCGA-CG-5726-01 2 159481795 159481795 T C PKP4 Missense_Mutation p.S337P 0.16 tolerated(0.09) probably_damaging(0.976) TCGA-CG-5726-01 2 160181408 160181408 T C BAZ2B Silent p.V2089V 0.30 TCGA-CG-5726-01 2 161223762 161223762 G A RBMS1 Silent p.H72H 0.13 TCGA-CG-5726-01 2 163695045 163695045 C T KCNH7 5'UTR 0.43 TCGA-CG-5726-01 2 165353779 165353779 T C GRB14 Silent p.L412L 0.40 TCGA-CG-5726-01 2 1658274 1658274 T C PXDN Missense_Mutation p.D615G 0.06 tolerated(0.17) benign(0.007) TCGA-CG-5726-01 2 165997164 165997165 - G SCN3A Frame_Shift_Ins p.E673Rfs*48 0.36 TCGA-CG-5726-01 2 167055359 167055359 T - SCN9A Frame_Shift_Del p.D1920Ifs*31 0.30 TCGA-CG-5726-01 2 168106521 168106521 A G XIRP2 Silent p.Q2873Q 0.30 TCGA-CG-5726-01 2 169938083 169938083 G - DHRS9 5'UTR 0.31 TCGA-CG-5726-01 2 170097542 170097542 C T LRP2 Missense_Mutation p.G1334D 0.05 benign(0.077) TCGA-CG-5726-01 2 170417153 170417153 G A FASTKD1 Nonsense_Mutation p.R239* 0.25 TCGA-CG-5726-01 2 170897447 170897447 T C UBR3 Missense_Mutation p.S1538P 0.04 deleterious(0.01) probably_damaging(0.99) TCGA-CG-5726-01 2 17884436 17884436 A G SMC6 Silent p.Y710Y 0.38 TCGA-CG-5726-01 2 179411522 179411522 G A TTN Missense_Mutation p.R31545C 0.08 TCGA-CG-5726-01 2 179441417 179441417 C T TTN Missense_Mutation p.R23185Q 0.07 TCGA-CG-5726-01 2 179590542 179590542 T C TTN Missense_Mutation p.Q6836R 0.36 TCGA-CG-5726-01 2 179590718 179590718 T C TTN Silent p.E6777E 0.50 TCGA-CG-5726-01 2 179612257 179612257 T G TTN Intron 0.38 TCGA-CG-5726-01 2 179612262 179612262 T A TTN Intron 0.38 TCGA-CG-5726-01 2 179615191 179615191 T A TTN Intron 0.39 TCGA-CG-5726-01 2 179621109 179621109 T A TTN Silent p.A3698A 0.44 TCGA-CG-5726-01 2 179669352 179669352 C T TTN Silent p.P6P 0.39 TCGA-CG-5726-01 2 179986628 179986628 T - SESTD1 Frame_Shift_Del p.G438Vfs*20 0.33 TCGA-CG-5726-01 2 180823790 180823790 C T CWC22 Missense_Mutation p.A473T 0.16 deleterious(0.02) benign(0.089) TCGA-CG-5726-01 2 186672757 186672757 C A FSIP2 Missense_Mutation p.P6331T 0.43 possibly_damaging(0.82) TCGA-CG-5726-01 2 187605148 187605148 C T FAM171B Silent p.Y144Y 0.09 TCGA-CG-5726-01 2 189599261 189599261 A - DIRC1 3'UTR 0.35 TCGA-CG-5726-01 2 191898700 191898701 - A STAT4 Frame_Shift_Ins p.W551Lfs*5 0.21 TCGA-CG-5726-01 2 192711639 192711639 C T SDPR Missense_Mutation p.A5T 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.811) TCGA-CG-5726-01 2 196602560 196602560 A - DNAH7 3'UTR 0.47 TCGA-CG-5726-01 2 197629314 197629314 C T GTF3C3 Silent p.T878T 0.43 TCGA-CG-5726-01 2 198966086 198966086 T A PLCL1 Splice_Site p.X999_splice 0.43 TCGA-CG-5726-01 2 201469483 201469483 C - AOX1 Frame_Shift_Del p.V247* 0.37 TCGA-CG-5726-01 2 201477410 201477410 T - AOX1 Frame_Shift_Del p.F449Lfs*44 0.34 TCGA-CG-5726-01 2 202552029 202552029 C A MPP4 Missense_Mutation p.Q115H 0.50 tolerated(0.09) possibly_damaging(0.722) TCGA-CG-5726-01 2 202622177 202622177 T C ALS2 Silent p.E473E 0.04 TCGA-CG-5726-01 2 204255835 204255835 A G ABI2 Missense_Mutation p.S177G 0.29 deleterious(0) probably_damaging(0.967) TCGA-CG-5726-01 2 20451242 20451242 A - PUM2 3'UTR 0.80 TCGA-CG-5726-01 2 206607957 206607957 T C NRP2 Missense_Mutation p.L441P 0.17 deleterious(0.04) possibly_damaging(0.585) TCGA-CG-5726-01 2 208633251 208633251 C T FZD5 Nonsense_Mutation p.W71* 0.17 TCGA-CG-5726-01 2 208633259 208633259 G A FZD5 Nonsense_Mutation p.Q69* 0.14 TCGA-CG-5726-01 2 208841408 208841408 G A PLEKHM3 Nonsense_Mutation p.R505* 0.05 TCGA-CG-5726-01 2 209025753 209025753 G A CRYGA Silent p.G100G 0.47 TCGA-CG-5726-01 2 210559300 210559300 G T MAP2 Missense_Mutation p.M802I 0.37 deleterious(0) possibly_damaging(0.643) TCGA-CG-5726-01 2 211019062 211019062 A - KANSL1L Frame_Shift_Del p.L82* 0.32 TCGA-CG-5726-01 2 21230729 21230729 G T APOB Missense_Mutation p.A3004D 0.36 possibly_damaging(0.796) TCGA-CG-5726-01 2 216251612 216251612 G A FN1 Missense_Mutation p.A1471V 0.33 tolerated(0.09) benign(0.368) TCGA-CG-5726-01 2 218700768 218700768 G A TNS1 Silent p.I933I 0.36 TCGA-CG-5726-01 2 219895549 219895549 G A CCDC108 Silent p.C341C 0.29 TCGA-CG-5726-01 2 220034745 220034746 CA - SLC23A3 5'UTR 0.43 TCGA-CG-5726-01 2 220404779 220404779 G A CHPF Missense_Mutation p.R552C 0.33 tolerated(0.17) possibly_damaging(0.86) TCGA-CG-5726-01 2 220409549 220409549 T C TMEM198 Missense_Mutation p.Y34H 0.33 deleterious(0) benign(0.403) TCGA-CG-5726-01 2 224866442 224866442 G A SERPINE2 Missense_Mutation p.A71V 0.28 deleterious(0) probably_damaging(0.973) TCGA-CG-5726-01 2 227662389 227662389 C T IRS1 Missense_Mutation p.A356T 0.30 tolerated(0.7) possibly_damaging(0.67) TCGA-CG-5726-01 2 228882351 228882351 G A SPHKAP Silent p.D1073D 0.44 TCGA-CG-5726-01 2 230642151 230642151 C T TRIP12 Silent p.R1728R 0.03 TCGA-CG-5726-01 2 232458553 232458553 C T C2orf57 Silent p.S297S 0.33 TCGA-CG-5726-01 2 233348859 233348859 G A ECEL1 Missense_Mutation p.A420V 0.51 deleterious(0) possibly_damaging(0.666) TCGA-CG-5726-01 2 234247319 234247319 C T SAG Intron 0.42 TCGA-CG-5726-01 2 234652528 234652528 C A UGT1A10 Intron 0.44 TCGA-CG-5726-01 2 237032595 237032595 C T AGAP1 Silent p.H801H 0.41 TCGA-CG-5726-01 2 237489456 237489456 G A ACKR3 Silent p.T116T 0.29 TCGA-CG-5726-01 2 239186494 239186494 C T PER2 Silent p.L28L 0.33 TCGA-CG-5726-01 2 239344354 239344354 G A ASB1 Missense_Mutation p.R65H 0.50 tolerated(0.54) probably_damaging(0.986) TCGA-CG-5726-01 2 241401788 241401788 G A GPC1 Missense_Mutation p.R169H 0.42 deleterious(0.03) probably_damaging(0.934) TCGA-CG-5726-01 2 241468876 241468876 G A ANKMY1 Silent p.P88P 0.36 TCGA-CG-5726-01 2 242169029 242169029 C - HDLBP Frame_Shift_Del p.G1265Afs*29 0.08 TCGA-CG-5726-01 2 242438541 242438541 C - STK25 Frame_Shift_Del p.E212Sfs*15 0.35 TCGA-CG-5726-01 2 24262011 24262011 G A C2orf44 Silent p.G118G 0.32 TCGA-CG-5726-01 2 242662669 242662669 G A ING5 Silent p.T221T 0.40 TCGA-CG-5726-01 2 27460681 27460681 C T CAD Silent p.A1553A 0.36 TCGA-CG-5726-01 2 27688651 27688651 G A IFT172 Silent p.I597I 0.42 TCGA-CG-5726-01 2 29063081 29063081 G A SPDYA Missense_Mutation p.R199H 0.39 deleterious(0) probably_damaging(1) TCGA-CG-5726-01 2 33487837 33487837 C T LTBP1 Missense_Mutation p.P823S 0.15 tolerated(0.1) possibly_damaging(0.77) TCGA-CG-5726-01 2 36749246 36749246 C T CRIM1 Missense_Mutation p.R740W 0.06 deleterious(0.01) benign(0.288) TCGA-CG-5726-01 2 37872789 37872789 T - CDC42EP3 3'UTR 0.32 TCGA-CG-5726-01 2 38201322 38201323 GA - RMDN2 Frame_Shift_Del p.S377Ffs*2 0.30 TCGA-CG-5726-01 2 38545705 38545705 G T ATL2 Missense_Mutation p.A192D 0.14 deleterious(0) probably_damaging(0.999) TCGA-CG-5726-01 2 43787479 43787479 C T THADA Missense_Mutation p.G786D 0.26 tolerated(0.31) benign(0.002) TCGA-CG-5726-01 2 45235919 45235919 C T SIX2 Missense_Mutation p.V111M 0.46 deleterious(0) probably_damaging(0.978) TCGA-CG-5726-01 2 45832557 45832557 C T SRBD1 Silent p.A8A 0.03 TCGA-CG-5726-01 2 48602092 48602092 A - FOXN2 Frame_Shift_Del p.K271Rfs*22 0.28 TCGA-CG-5726-01 2 48941140 48941140 G A LHCGR Missense_Mutation p.T197M 0.40 deleterious(0) probably_damaging(0.994) TCGA-CG-5726-01 2 49217744 49217744 G T FSHR Missense_Mutation p.P136Q 0.13 deleterious(0) probably_damaging(1) TCGA-CG-5726-01 2 50573835 50573835 C T NRXN1 Intron 0.34 TCGA-CG-5726-01 2 54080672 54080672 G A GPR75 Nonsense_Mutation p.R408* 0.05 TCGA-CG-5726-01 2 55771388 55771388 G A CCDC104 Silent p.R270R 0.39 TCGA-CG-5726-01 2 55870544 55870544 C T PNPT1 Silent p.Q641Q 0.10 TCGA-CG-5726-01 2 5833158 5833158 C T SOX11 Missense_Mutation p.A102V 0.23 deleterious(0) probably_damaging(0.999) TCGA-CG-5726-01 2 61304055 61304055 G A KIAA1841 Silent p.G144G 0.38 TCGA-CG-5726-01 2 61475795 61475795 C T USP34 Missense_Mutation p.R2082H 0.06 tolerated(0.23) benign(0.188) TCGA-CG-5726-01 2 64323400 64323401 - A PELI1 Frame_Shift_Ins p.L183Ffs*4 0.34 TCGA-CG-5726-01 2 68691370 68691370 C - FBXO48 Frame_Shift_Del p.E147Kfs*3 0.29 TCGA-CG-5726-01 2 69472360 69472360 C T ANTXR1 Missense_Mutation p.R480C 0.31 deleterious(0.01) probably_damaging(0.977) TCGA-CG-5726-01 2 70031679 70031679 G A ANXA4 Missense_Mutation p.A38T 0.35 tolerated(0.23) benign(0.162) TCGA-CG-5726-01 2 71012593 71012593 T C FIGLA Missense_Mutation p.H188R 0.04 tolerated(0.2) benign(0.004) TCGA-CG-5726-01 2 73827831 73827831 A - ALMS1 Frame_Shift_Del p.K3899Nfs*8 0.27 TCGA-CG-5726-01 2 73868259 73868259 C T NAT8 Missense_Mutation p.R166Q 0.11 tolerated(0.32) benign(0.216) TCGA-CG-5726-01 2 74590160 74590160 T A DCTN1 Missense_Mutation p.T1164S 0.23 tolerated(0.15) benign(0.001) TCGA-CG-5726-01 2 74759794 74759794 G A HTRA2 Silent p.Q388Q 0.20 TCGA-CG-5726-01 2 75113685 75113685 C T HK2 Missense_Mutation p.R702W 0.18 deleterious(0.01) benign(0.015) TCGA-CG-5726-01 2 80831288 80831288 G A CTNNA2 Missense_Mutation p.R760H 0.44 deleterious(0) probably_damaging(0.993) TCGA-CG-5726-01 2 85769177 85769177 A - MAT2A Intron 0.36 TCGA-CG-5726-01 2 85827471 85827471 T C TMEM150A Missense_Mutation p.M89V 0.06 deleterious(0.01) possibly_damaging(0.472) TCGA-CG-5726-01 2 85852763 85852763 T C USP39 Silent p.I224I 0.17 TCGA-CG-5726-01 2 86373208 86373208 A C IMMT Missense_Mutation p.I549S 0.32 deleterious(0) probably_damaging(0.998) TCGA-CG-5726-01 2 86693713 86693713 C T KDM3A Missense_Mutation p.A409V 0.03 deleterious_low_confidence(0.01) benign(0.011) TCGA-CG-5726-01 2 86992214 86992214 A G RMND5A Missense_Mutation p.R196G 0.03 deleterious(0) probably_damaging(0.98) TCGA-CG-5726-01 2 95815928 95815928 T C ZNF514 Missense_Mutation p.E101G 0.18 tolerated(0.13) benign(0.013) TCGA-CG-5726-01 2 96697827 96697827 C T GPAT2 Missense_Mutation p.R44H 0.09 deleterious(0.02) unknown(0) TCGA-CG-5726-01 2 96992973 96992973 C T ITPRIPL1 Missense_Mutation p.R210W 0.38 deleterious(0) possibly_damaging(0.781) TCGA-CG-5726-01 2 97007608 97007608 G A NCAPH Missense_Mutation p.R83H 0.40 tolerated(0.62) benign(0.001) TCGA-CG-5726-01 2 97526890 97526890 G - SEMA4C Frame_Shift_Del p.L659Wfs*87 0.19 TCGA-CG-5726-01 2 98201579 98201579 G T ANKRD36B Intron 0.04 TCGA-CG-5726-01 3 100972552 100972552 C T IMPG2 Silent p.P409P 0.40 TCGA-CG-5726-01 3 101044872 101044872 C T SENP7 Missense_Mutation p.R1023H 0.45 deleterious(0) probably_damaging(0.999) TCGA-CG-5726-01 3 101083705 101083705 T C SENP7 Silent p.L483L 0.43 TCGA-CG-5726-01 3 10114936 10114936 G T FANCD2 Splice_Site p.X869_splice 0.11 TCGA-CG-5726-01 3 112991965 112991965 C T BOC Silent p.G337G 0.07 TCGA-CG-5726-01 3 113378505 113378505 G T KIAA2018 Missense_Mutation p.P675H 0.07 probably_damaging(0.999) TCGA-CG-5726-01 3 114058003 114058003 G - ZBTB20 Frame_Shift_Del p.P692Lfs*43 0.34 TCGA-CG-5726-01 3 121388136 121388136 G A GOLGB1 Missense_Mutation p.R3082C 0.04 benign(0.289) TCGA-CG-5726-01 3 124560272 124560272 A G ITGB5 Silent p.P246P 0.27 TCGA-CG-5726-01 3 125166495 125166495 A G SNX4 3'UTR 0.57 TCGA-CG-5726-01 3 125872123 125872123 G A ALDH1L1 Intron 0.70 TCGA-CG-5726-01 3 126741073 126741073 C T PLXNA1 Missense_Mutation p.T1395M 0.33 deleterious(0) probably_damaging(0.976) TCGA-CG-5726-01 3 126747142 126747142 T C PLXNA1 Missense_Mutation p.V1543A 0.08 tolerated(0.14) benign(0.232) TCGA-CG-5726-01 3 12783970 12783970 T G TMEM40 Missense_Mutation p.E113A 0.41 tolerated(0.06) possibly_damaging(0.558) TCGA-CG-5726-01 3 128181303 128181303 A G DNAJB8 3'UTR 0.33 TCGA-CG-5726-01 3 128979597 128979597 C T COPG1 Missense_Mutation p.R359C 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-CG-5726-01 3 130435316 130435316 C T PIK3R4 Missense_Mutation p.R752Q 0.41 deleterious(0) probably_damaging(0.999) TCGA-CG-5726-01 3 132184906 132184906 C T DNAJC13 Missense_Mutation p.R654C 0.31 deleterious(0) probably_damaging(0.915) TCGA-CG-5726-01 3 134280384 134280384 A - CEP63 3'UTR 0.25 TCGA-CG-5726-01 3 138724625 138724625 G A PRR23A Silent p.P162P 0.54 TCGA-CG-5726-01 3 141497732 141497732 T G GRK7 Missense_Mutation p.F202L 0.38 deleterious(0) possibly_damaging(0.706) TCGA-CG-5726-01 3 14183281 14183281 A - TMEM43 Frame_Shift_Del p.K398Sfs*17 0.51 TCGA-CG-5726-01 3 142142409 142142409 T - XRN1 Frame_Shift_Del p.T235Hfs*19 0.31 TCGA-CG-5726-01 3 14239580 14239580 C T LSM3 Silent p.G91G 0.11 TCGA-CG-5726-01 3 14554310 14554310 G A GRIP2 RNA 0.12 TCGA-CG-5726-01 3 151545776 151545776 C A AADAC Missense_Mutation p.T339N 0.40 deleterious(0) probably_damaging(0.999) TCGA-CG-5726-01 3 15297405 15297405 T C SH3BP5 3'UTR 0.40 TCGA-CG-5726-01 3 154022719 154022719 A C DHX36 Missense_Mutation p.H337Q 0.28 deleterious(0) probably_damaging(1) TCGA-CG-5726-01 3 16419244 16419244 A G RFTN1 Silent p.H269H 0.39 TCGA-CG-5726-01 3 167189546 167189546 T - SERPINI2 Frame_Shift_Del p.N26Ifs*27 0.33 TCGA-CG-5726-01 3 170611037 170611037 A - EIF5A2 3'UTR 0.33 TCGA-CG-5726-01 3 170625513 170625513 T - EIF5A2 Frame_Shift_Del p.N28Tfs*13 0.31 TCGA-CG-5726-01 3 176769342 176769342 T - TBL1XR1 Frame_Shift_Del p.N126Mfs*16 0.38 TCGA-CG-5726-01 3 179076773 179076774 - A MFN1 Frame_Shift_Ins p.S135Efs*6 0.08 TCGA-CG-5726-01 3 179298929 179298929 G A ACTL6A Missense_Mutation p.G316E 0.30 tolerated(0.09) benign(0.261) TCGA-CG-5726-01 3 180694181 180694181 G A FXR1 3'UTR 0.30 TCGA-CG-5726-01 3 183685490 183685490 A - ABCC5 Frame_Shift_Del p.L609* 0.36 TCGA-CG-5726-01 3 184052772 184052772 C T EIF4G1 3'UTR 0.46 TCGA-CG-5726-01 3 184105786 184105786 G A CHRD Missense_Mutation p.R840H 0.34 deleterious(0) probably_damaging(1) TCGA-CG-5726-01 3 185212517 185212518 - A TMEM41A Frame_Shift_Ins p.L158Ifs*40 0.27 TCGA-CG-5726-01 3 186917755 186917755 C T RTP1 Missense_Mutation p.T230M 0.38 tolerated(0.12) benign(0.003) TCGA-CG-5726-01 3 196857450 196857450 T - DLG1 Frame_Shift_Del p.K404Nfs*7 0.34 TCGA-CG-5726-01 3 197703560 197703560 G A LMLN Missense_Mutation p.V175I 0.18 tolerated(0.13) benign(0.076) TCGA-CG-5726-01 3 197751646 197751646 G A LMLN Missense_Mutation p.S585N 0.31 deleterious(0) possibly_damaging(0.783) TCGA-CG-5726-01 3 24138609 24138609 A G LINC00691 RNA 0.43 TCGA-CG-5726-01 3 30713226 30713226 T A TGFBR2 Missense_Mutation p.I209N 0.43 tolerated(0.06) benign(0.066) TCGA-CG-5726-01 3 33866811 33866811 T - PDCD6IP Frame_Shift_Del p.L201* 0.37 TCGA-CG-5726-01 3 33907899 33907899 A T PDCD6IP Missense_Mutation p.N835I 0.36 deleterious(0.03) possibly_damaging(0.902) TCGA-CG-5726-01 3 38136374 38136374 G A DLEC1 Missense_Mutation p.V642M 0.43 deleterious(0) probably_damaging(0.992) TCGA-CG-5726-01 3 39139895 39139895 C T GORASP1 Silent p.Q385Q 0.31 TCGA-CG-5726-01 3 39227515 39227515 C A XIRP1 Missense_Mutation p.G1141V 0.34 deleterious(0) possibly_damaging(0.902) TCGA-CG-5726-01 3 39433004 39433004 C T SLC25A38 Nonsense_Mutation p.R117* 0.36 TCGA-CG-5726-01 3 40192665 40192665 C T MYRIP Silent p.F153F 0.36 TCGA-CG-5726-01 3 40528780 40528780 A G ZNF619 Missense_Mutation p.Y300C 0.47 deleterious(0) probably_damaging(1) TCGA-CG-5726-01 3 40574091 40574092 TT - ZNF621 Frame_Shift_Del p.F278Yfs*16 0.15 TCGA-CG-5726-01 3 41607548 41607548 T G ULK4 Missense_Mutation p.K1065T 0.05 tolerated(0.31) benign(0.125) TCGA-CG-5726-01 3 42244033 42244033 G A TRAK1 Silent p.S511S 0.34 TCGA-CG-5726-01 3 42299537 42299537 C T CCK 3'UTR 0.07 TCGA-CG-5726-01 3 42772008 42772008 C T CCDC13 Missense_Mutation p.E557K 0.46 deleterious(0.04) benign(0.1) TCGA-CG-5726-01 3 42915802 42915802 C T CYP8B1 3'UTR 0.17 TCGA-CG-5726-01 3 42916909 42916909 C - CYP8B1 Frame_Shift_Del p.D134Mfs*3 0.15 TCGA-CG-5726-01 3 44775776 44775776 T C ZNF501 5'UTR 0.62 TCGA-CG-5726-01 3 45745000 45745000 C G SACM1L Missense_Mutation p.R35G 0.37 deleterious(0) probably_damaging(0.995) TCGA-CG-5726-01 3 46560368 46560368 T - LRRC2 3'UTR 0.30 TCGA-CG-5726-01 3 47037248 47037248 C T NBEAL2 Missense_Mutation p.A648V 0.47 tolerated(0.45) benign(0.009) TCGA-CG-5726-01 3 47103666 47103666 T - SETD2 Frame_Shift_Del p.R2094Gfs*53 0.19 TCGA-CG-5726-01 3 47452322 47452322 C - PTPN23 Frame_Shift_Del p.L1014Yfs*146 0.26 TCGA-CG-5726-01 3 48422396 48422396 A G FBXW12 Missense_Mutation p.I327V 0.44 tolerated(0.83) benign(0) TCGA-CG-5726-01 3 48619157 48619157 G A COL7A1 Silent p.T1568T 0.38 TCGA-CG-5726-01 3 49720820 49720820 G A APEH 3'UTR 0.45 TCGA-CG-5726-01 3 50330907 50330907 A C HYAL3 Missense_Mutation p.L342V 0.48 deleterious(0) probably_damaging(1) TCGA-CG-5726-01 3 51430740 51430742 AGG - RBM15B In_Frame_Del p.E638del 0.39 TCGA-CG-5726-01 3 51664851 51664851 C T RAD54L2 Silent p.D243D 0.43 TCGA-CG-5726-01 3 51733548 51733548 C T TEX264 Missense_Mutation p.R203W 0.39 deleterious(0.03) benign(0.007) TCGA-CG-5726-01 3 51991946 51991946 G - PCBP4 3'UTR 0.37 TCGA-CG-5726-01 3 52257576 52257576 G A TLR9 Silent p.G406G 0.15 TCGA-CG-5726-01 3 52378637 52378639 AGG - DNAH1 In_Frame_Del p.E476del 0.27 TCGA-CG-5726-01 3 52731828 52731828 C - GLT8D1 Frame_Shift_Del p.A80Pfs*5 0.41 TCGA-CG-5726-01 3 52883893 52883893 G A TMEM110 Silent p.G114G 0.21 TCGA-CG-5726-01 3 52945098 52945098 G A SFMBT1 Silent p.C609C 0.03 TCGA-CG-5726-01 3 53883679 53883679 C A IL17RB Intron 0.20 TCGA-CG-5726-01 3 54922040 54922040 T A CACNA2D3 Missense_Mutation p.I704N 0.44 deleterious(0) possibly_damaging(0.646) TCGA-CG-5726-01 3 56597857 56597857 A - CCDC66 Frame_Shift_Del p.N85Mfs*3 0.37 TCGA-CG-5726-01 3 56657683 56657683 C T FAM208A 3'UTR 0.51 TCGA-CG-5726-01 3 56675690 56675690 T C FAM208A Missense_Mutation p.H769R 0.42 tolerated(0.3) benign(0.005) TCGA-CG-5726-01 3 57528532 57528532 G - DNAH12 Frame_Shift_Del p.I23Lfs*8 0.35 TCGA-CG-5726-01 3 58121816 58121816 C T FLNB Silent p.Y1625Y 0.35 TCGA-CG-5726-01 3 58631238 58631238 G A FAM3D Silent p.R87R 0.30 TCGA-CG-5726-01 3 66428192 66428192 G A SLC25A26 Silent p.T262T 0.03 TCGA-CG-5726-01 3 73112038 73112038 G A EBLN2 Missense_Mutation p.R269H 0.05 deleterious_low_confidence(0) benign(0) TCGA-CG-5726-01 3 74313501 74313501 T - CNTN3 3'UTR 0.14 TCGA-CG-5726-01 3 78648053 78648053 T A ROBO1 3'UTR 0.37 TCGA-CG-5726-01 3 78710235 78710235 A - ROBO1 Frame_Shift_Del p.F755Lfs*28 0.26 TCGA-CG-5726-01 3 93611853 93611853 T A PROS1 Missense_Mutation p.E360V 0.32 deleterious(0) probably_damaging(1) TCGA-CG-5726-01 3 93733837 93733837 T C STX19 Missense_Mutation p.T93A 0.38 tolerated(0.29) benign(0.003) TCGA-CG-5726-01 3 9512161 9512161 C T SETD5 Silent p.L915L 0.38 TCGA-CG-5726-01 3 9781094 9781094 C T BRPF1 Silent p.G337G 0.05 TCGA-CG-5726-01 3 98216757 98216757 C - OR5K2 Frame_Shift_Del p.M81Cfs*2 0.30 TCGA-CG-5726-01 3 9848089 9848089 A C ARPC4 3'UTR 0.50 TCGA-CG-5726-01 3 9877137 9877137 G A TTLL3 Silent p.A904A 0.42 TCGA-CG-5726-01 4 105412064 105412064 T C CXXC4 Missense_Mutation p.N299S 0.36 tolerated(0.06) possibly_damaging(0.473) TCGA-CG-5726-01 4 106552376 106552376 T - ARHGEF38 Intron 0.64 TCGA-CG-5726-01 4 108870643 108870643 A - CYP2U1 Frame_Shift_Del p.E478Kfs*8 0.15 TCGA-CG-5726-01 4 113570754 113570754 A - LARP7 Frame_Shift_Del p.T412Qfs*5 0.42 TCGA-CG-5726-01 4 119203370 119203372 TTG - PRSS12 In_Frame_Del p.Q783del 0.08 TCGA-CG-5726-01 4 121774642 121774642 C T PRDM5 Silent p.R77R 0.03 TCGA-CG-5726-01 4 121958294 121958294 G A NDNF Missense_Mutation p.R278C 0.06 deleterious(0.01) possibly_damaging(0.634) TCGA-CG-5726-01 4 121961098 121961098 G A NDNF Silent p.S100S 0.15 TCGA-CG-5726-01 4 124235284 124235287 TTTT CTC SPATA5 3'UTR 0.36 TCGA-CG-5726-01 4 126239229 126239229 C T FAT4 Missense_Mutation p.R555W 0.42 probably_damaging(0.978) TCGA-CG-5726-01 4 138452975 138452975 C T PCDH18 Missense_Mutation p.A90T 0.33 tolerated(0.77) benign(0.003) TCGA-CG-5726-01 4 146700596 146700596 A - ZNF827 Frame_Shift_Del p.C819Vfs*42 0.30 TCGA-CG-5726-01 4 151504117 151504117 C T MAB21L2 5'UTR 0.37 TCGA-CG-5726-01 4 154523729 154523729 G A KIAA0922 Missense_Mutation p.R830Q 0.35 deleterious(0) probably_damaging(0.999) TCGA-CG-5726-01 4 155155579 155155579 T C DCHS2 3'UTR 0.38 TCGA-CG-5726-01 4 155155840 155155840 C A DCHS2 Nonsense_Mutation p.E2867* 0.37 TCGA-CG-5726-01 4 155157007 155157007 C A DCHS2 Nonsense_Mutation p.G2478* 0.37 TCGA-CG-5726-01 4 156784774 156784774 C T ASIC5 Missense_Mutation p.S58N 0.37 tolerated(0.22) benign(0.06) TCGA-CG-5726-01 4 157684333 157684333 C T PDGFC Missense_Mutation p.G316D 0.45 deleterious(0.05) probably_damaging(1) TCGA-CG-5726-01 4 158262574 158262574 A G GRIA2 Missense_Mutation p.Y668C 0.16 deleterious(0) probably_damaging(0.992) TCGA-CG-5726-01 4 162577602 162577602 T C FSTL5 Missense_Mutation p.T258A 0.41 tolerated(0.12) probably_damaging(0.987) TCGA-CG-5726-01 4 166231877 166231877 T C KLHL2 Silent p.A408A 0.38 TCGA-CG-5726-01 4 169351672 169351672 C T DDX60L Missense_Mutation p.R545Q 0.26 tolerated(0.46) benign(0.001) TCGA-CG-5726-01 4 170912461 170912461 G A MFAP3L 3'UTR 0.34 TCGA-CG-5726-01 4 1729454 1729454 G A TACC3 Missense_Mutation p.V109M 0.14 tolerated(0.15) benign(0.374) TCGA-CG-5726-01 4 173803946 173803946 C T GALNTL6 Missense_Mutation p.P310L 0.38 deleterious(0) probably_damaging(1) TCGA-CG-5726-01 4 17585226 17585226 A - LAP3 Frame_Shift_Del p.K169Rfs*34 0.37 TCGA-CG-5726-01 4 183815681 183815681 A C DCTD Missense_Mutation p.F119V 0.27 deleterious(0) probably_damaging(0.999) TCGA-CG-5726-01 4 184596387 184596387 T G TRAPPC11 Missense_Mutation p.L244R 0.38 deleterious(0.01) possibly_damaging(0.766) TCGA-CG-5726-01 4 185339729 185339729 C A IRF2 Missense_Mutation p.R107S 0.40 deleterious(0) probably_damaging(0.99) TCGA-CG-5726-01 4 186295603 186295603 C A LRP2BP Missense_Mutation p.D115Y 0.39 deleterious(0) possibly_damaging(0.634) TCGA-CG-5726-01 4 186336370 186336370 T - UFSP2 Frame_Shift_Del p.N208Ifs*3 0.39 TCGA-CG-5726-01 4 186380474 186380474 G A CCDC110 Nonsense_Mutation p.Q423* 0.38 TCGA-CG-5726-01 4 186515044 186515044 C - SORBS2 Frame_Shift_Del p.E1144Nfs*65 0.34 TCGA-CG-5726-01 4 187075716 187075716 C T FAM149A Missense_Mutation p.R103C 0.05 tolerated(0.22) benign(0.001) TCGA-CG-5726-01 4 187173268 187173268 T G KLKB1 Silent p.A414A 0.36 TCGA-CG-5726-01 4 187509854 187509854 G A FAT1 Silent p.C4553C 0.41 TCGA-CG-5726-01 4 1941423 1941423 G A WHSC1 Missense_Mutation p.R600Q 0.46 deleterious(0) probably_damaging(0.999) TCGA-CG-5726-01 4 24542527 24542527 A G DHX15 Silent p.V510V 0.04 TCGA-CG-5726-01 4 30724436 30724436 C T PCDH7 Silent p.G464G 0.11 TCGA-CG-5726-01 4 3182362 3182362 T C HTT Missense_Mutation p.L1578P 0.16 probably_damaging(0.999) TCGA-CG-5726-01 4 3429895 3429895 C T RGS12 Missense_Mutation p.T1137M 0.38 tolerated(0.07) benign(0.104) TCGA-CG-5726-01 4 3449219 3449219 C - HGFAC Frame_Shift_Del p.R455Gfs*19 0.15 TCGA-CG-5726-01 4 3487306 3487306 G A DOK7 Silent p.Q191Q 0.34 TCGA-CG-5726-01 4 37636679 37636679 C T RELL1 Silent p.T170T 0.44 TCGA-CG-5726-01 4 4199303 4199303 G - OTOP1 Frame_Shift_Del p.R420Afs*86 0.37 TCGA-CG-5726-01 4 42466947 42466947 A C ATP8A1 Missense_Mutation p.L824R 0.16 tolerated(0.08) possibly_damaging(0.621) TCGA-CG-5726-01 4 44450429 44450429 C T KCTD8 Missense_Mutation p.A38T 0.25 tolerated_low_confidence(0.32) benign(0.002) TCGA-CG-5726-01 4 52951146 52951146 G A SPATA18 Missense_Mutation p.S515N 0.43 tolerated(0.15) probably_damaging(0.916) TCGA-CG-5726-01 4 55143602 55143602 G A PDGFRA Missense_Mutation p.A612T 0.37 deleterious(0.02) probably_damaging(0.999) TCGA-CG-5726-01 4 57181050 57181050 G A KIAA1211 Missense_Mutation p.R461Q 0.50 tolerated(0.59) unknown(0) TCGA-CG-5726-01 4 57333773 57333773 T G SRP72 5'UTR 0.56 TCGA-CG-5726-01 4 57839340 57839340 T C NOA1 Missense_Mutation p.T497A 0.05 deleterious(0.01) probably_damaging(0.99) TCGA-CG-5726-01 4 5838577 5838577 G A CRMP1 Missense_Mutation p.A456V 0.34 deleterious(0.01) probably_damaging(0.982) TCGA-CG-5726-01 4 69433562 69433562 T - UGT2B17 Frame_Shift_Del p.N214Ifs*2 0.33 TCGA-CG-5726-01 4 69693173 69693173 T C UGT2B10 Missense_Mutation p.M405T 0.35 deleterious(0) probably_damaging(0.979) TCGA-CG-5726-01 4 70156391 70156391 T C UGT2B28 Missense_Mutation p.V391A 0.28 deleterious(0) probably_damaging(0.977) TCGA-CG-5726-01 4 76797712 76797712 C T PPEF2 Missense_Mutation p.E350K 0.32 tolerated(0.52) benign(0.002) TCGA-CG-5726-01 4 77230640 77230640 C T FAM47E-STBD1 Silent p.S188S 0.32 TCGA-CG-5726-01 4 77255321 77255321 C T CCDC158 Splice_Site p.X889_splice 0.11 TCGA-CG-5726-01 4 77816917 77816917 G A SOWAHB Missense_Mutation p.R696W 0.41 deleterious(0) possibly_damaging(0.898) TCGA-CG-5726-01 4 77969731 77969731 C T CCNI Missense_Mutation p.V259I 0.38 tolerated(0.06) probably_damaging(0.996) TCGA-CG-5726-01 4 82126113 82126113 A G PRKG2 Missense_Mutation p.V30A 0.17 deleterious(0) possibly_damaging(0.805) TCGA-CG-5726-01 4 8293275 8293275 C T HTRA3 Missense_Mutation p.T296M 0.11 deleterious(0) probably_damaging(0.995) TCGA-CG-5726-01 4 8394073 8394073 G A ACOX3 Silent p.H429H 0.43 TCGA-CG-5726-01 4 87691032 87691032 A - PTPN13 Frame_Shift_Del p.K1540Sfs*16 0.31 TCGA-CG-5726-01 4 88903934 88903934 A T SPP1 Missense_Mutation p.E277D 0.49 deleterious(0.02) possibly_damaging(0.848) TCGA-CG-5726-01 4 94750420 94750420 A G ATOH1 Missense_Mutation p.S115G 0.27 tolerated(0.24) benign(0) TCGA-CG-5726-01 5 11082809 11082809 G A CTNND2 Silent p.I929I 0.43 TCGA-CG-5726-01 5 112176242 112176243 TT - APC Frame_Shift_Del p.S1652Hfs*7 0.32 TCGA-CG-5726-01 5 112227916 112227916 C T ZRSR1 Missense_Mutation p.R194C 0.05 deleterious(0.05) possibly_damaging(0.891) TCGA-CG-5726-01 5 112327834 112327834 G A DCP2 Silent p.P74P 0.35 TCGA-CG-5726-01 5 11384949 11384949 G - CTNND2 Frame_Shift_Del p.T336Pfs*14 0.50 TCGA-CG-5726-01 5 114573623 114573623 G A PGGT1B Silent p.D137D 0.37 TCGA-CG-5726-01 5 118486082 118486082 C T DMXL1 Silent p.S1520S 0.42 TCGA-CG-5726-01 5 122734964 122734964 C T CEP120 Missense_Mutation p.A160T 0.36 tolerated(0.53) benign(0.01) TCGA-CG-5726-01 5 127800499 127800499 G A FBN2 Silent p.G248G 0.37 TCGA-CG-5726-01 5 129070744 129070744 C T ADAMTS19 Silent p.C1138C 0.12 TCGA-CG-5726-01 5 132232627 132232627 T - AFF4 Frame_Shift_Del p.K565Nfs*18 0.17 TCGA-CG-5726-01 5 134235216 134235216 C T TXNDC15 Silent p.A308A 0.05 TCGA-CG-5726-01 5 135513177 135513177 T C SMAD5 3'UTR 0.48 TCGA-CG-5726-01 5 137486467 137486467 A G BRD8 Silent p.C1029C 0.36 TCGA-CG-5726-01 5 137600037 137600037 G A GFRA3 Silent p.L98L 0.39 TCGA-CG-5726-01 5 138715466 138715466 C T SLC23A1 Missense_Mutation p.V280M 0.36 deleterious(0.01) benign(0.218) TCGA-CG-5726-01 5 139197119 139197119 C T PSD2 Missense_Mutation p.S357L 0.40 deleterious(0.01) possibly_damaging(0.858) TCGA-CG-5726-01 5 139574044 139574044 G C CYSTM1 5'UTR 0.42 TCGA-CG-5726-01 5 140182832 140182832 G A PCDHA3 Missense_Mutation p.A684T 0.48 tolerated_low_confidence(0.2) benign(0.012) TCGA-CG-5726-01 5 140189048 140189048 G A PCDHA4 Missense_Mutation p.C759Y 0.20 deleterious_low_confidence(0.01) benign(0.175) TCGA-CG-5726-01 5 140203040 140203040 C T PCDHA5 Silent p.N560N 0.49 TCGA-CG-5726-01 5 140203226 140203226 C T PCDHA5 Silent p.R622R 0.06 TCGA-CG-5726-01 5 140242457 140242457 T C AC005609.1 Missense_Mutation p.I173M 0.31 possibly_damaging(0.506) TCGA-CG-5726-01 5 140262616 140262616 G A PCDHA13 Missense_Mutation p.A255T 0.31 tolerated_low_confidence(0.46) benign(0.044) TCGA-CG-5726-01 5 140530204 140530204 C T PCDHB6 Silent p.V122V 0.33 TCGA-CG-5726-01 5 140588928 140588928 C T PCDHB12 Missense_Mutation p.A150V 0.36 deleterious_low_confidence(0) benign(0.047) TCGA-CG-5726-01 5 140604247 140604247 T - PCDHB14 Frame_Shift_Del p.F392Sfs*2 0.29 TCGA-CG-5726-01 5 140615866 140615866 C T PCDHB18 RNA 0.08 TCGA-CG-5726-01 5 140730469 140730469 C T PCDHGB1 Silent p.G214G 0.29 TCGA-CG-5726-01 5 140753737 140753737 G A PCDHGA6 Silent p.A29A 0.41 TCGA-CG-5726-01 5 140773115 140773115 G A PCDHGA8 Silent p.P245P 0.47 TCGA-CG-5726-01 5 140799314 140799314 C T PCDHGB7 Missense_Mutation p.R630C 0.40 deleterious(0.01) probably_damaging(0.983) TCGA-CG-5726-01 5 140951529 140951529 C T DIAPH1 Missense_Mutation p.A813T 0.38 benign(0.274) TCGA-CG-5726-01 5 141242815 141242815 G - PCDH1 Frame_Shift_Del p.K1028Nfs*71 0.43 TCGA-CG-5726-01 5 141309272 141309272 A T KIAA0141 Nonsense_Mutation p.R180* 0.44 TCGA-CG-5726-01 5 141694197 141694197 G A SPRY4 Silent p.C182C 0.34 TCGA-CG-5726-01 5 145719822 145719822 C T POU4F3 Missense_Mutation p.R278C 0.36 deleterious(0) probably_damaging(1) TCGA-CG-5726-01 5 145843206 145843206 G - TCERG1 Frame_Shift_Del p.V329Cfs*33 0.35 TCGA-CG-5726-01 5 147505129 147505129 T - SPINK5 Frame_Shift_Del p.F928Lfs*14 0.33 TCGA-CG-5726-01 5 148697298 148697298 T C AFAP1L1 Missense_Mutation p.L425P 0.15 deleterious(0) probably_damaging(0.994) TCGA-CG-5726-01 5 148730613 148730613 T - GRPEL2 Frame_Shift_Del p.L150* 0.28 TCGA-CG-5726-01 5 149433613 149433613 A G CSF1R 3'UTR 0.34 TCGA-CG-5726-01 5 149502704 149502704 C T PDGFRB Missense_Mutation p.R695H 0.14 deleterious(0) probably_damaging(0.963) TCGA-CG-5726-01 5 151042963 151042963 A G SPARC 3'UTR 0.14 TCGA-CG-5726-01 5 151179857 151179857 G A G3BP1 Missense_Mutation p.G345D 0.07 deleterious(0.01) possibly_damaging(0.798) TCGA-CG-5726-01 5 154339601 154339602 TA - MRPL22 Frame_Shift_Del p.I136Sfs*2 0.13 TCGA-CG-5726-01 5 158526597 158526597 T - EBF1 5'UTR 0.43 TCGA-CG-5726-01 5 161524835 161524835 G A GABRG2 Nonsense_Mutation p.W173* 0.05 TCGA-CG-5726-01 5 16711279 16711279 G A MYO10 Missense_Mutation p.R669C 0.49 deleterious(0) probably_damaging(0.998) TCGA-CG-5726-01 5 169015404 169015404 A - SPDL1 5'UTR 0.45 TCGA-CG-5726-01 5 169477281 169477281 G A DOCK2 Missense_Mutation p.G1365R 0.41 deleterious(0) probably_damaging(1) TCGA-CG-5726-01 5 171386 171386 G - PLEKHG4B Frame_Shift_Del p.V937Cfs*59 0.33 TCGA-CG-5726-01 5 171517344 171517345 - T STK10 Frame_Shift_Ins p.T526Nfs*27 0.13 TCGA-CG-5726-01 5 175110616 175110616 C A HRH2 Missense_Mutation p.P127H 0.41 tolerated(0.08) benign(0.201) TCGA-CG-5726-01 5 176004529 176004529 G A CDHR2 Missense_Mutation p.E442K 0.19 deleterious(0) probably_damaging(1) TCGA-CG-5726-01 5 176056582 176056582 C T SNCB Missense_Mutation p.G25E 0.50 deleterious(0) probably_damaging(0.998) TCGA-CG-5726-01 5 176951928 176951928 T C FAM193B Silent p.S518S 0.49 TCGA-CG-5726-01 5 179250925 179250925 C - SQSTM1 Frame_Shift_Del p.N125Mfs*2 0.37 TCGA-CG-5726-01 5 180047183 180047183 C T FLT4 Silent p.R844R 0.13 TCGA-CG-5726-01 5 180432460 180432460 T A BTNL3 Missense_Mutation p.V330E 0.41 deleterious(0) probably_damaging(1) TCGA-CG-5726-01 5 191707 191707 C - LRRC14B Frame_Shift_Del p.Q20Rfs*30 0.30 TCGA-CG-5726-01 5 32235098 32235100 GAA - MTMR12 In_Frame_Del p.F494del 0.34 TCGA-CG-5726-01 5 32355834 32355834 T - ZFR 3'UTR 0.20 TCGA-CG-5726-01 5 32406984 32406984 A T ZFR Silent p.T309T 0.05 TCGA-CG-5726-01 5 33937420 33937420 G A RXFP3 Missense_Mutation p.R192Q 0.32 tolerated(0.06) benign(0.016) TCGA-CG-5726-01 5 35867541 35867541 A - IL7R Frame_Shift_Del p.I121* 0.35 TCGA-CG-5726-01 5 35955903 35955903 C T UGT3A1 Missense_Mutation p.R380H 0.37 tolerated(0.43) benign(0.001) TCGA-CG-5726-01 5 38942984 38942984 G A RICTOR Missense_Mutation p.P1668L 0.42 tolerated(0.24) benign(0.324) TCGA-CG-5726-01 5 40853916 40853916 G A CARD6 Missense_Mutation p.A828T 0.03 tolerated(0.25) benign(0.015) TCGA-CG-5726-01 5 41004528 41004528 T - MROH2B Frame_Shift_Del p.I1372Sfs*5 0.28 TCGA-CG-5726-01 5 42800608 42800608 C T SEPP1 3'UTR 0.45 TCGA-CG-5726-01 5 54573111 54573111 C G DHX29 Splice_Site p.X704_splice 0.34 TCGA-CG-5726-01 5 5464464 5464464 C T KIAA0947 Missense_Mutation p.R1673C 0.15 tolerated(0.18) benign(0) TCGA-CG-5726-01 5 56778450 56778450 G - ACTBL2 Frame_Shift_Del p.R29Gfs*7 0.38 TCGA-CG-5726-01 5 58295328 58295328 C A PDE4D Intron 0.18 TCGA-CG-5726-01 5 6742688 6742688 A T PAPD7 Missense_Mutation p.E115V 0.32 tolerated(0.12) benign(0.016) TCGA-CG-5726-01 5 68417584 68417584 A G SLC30A5 Missense_Mutation p.S545G 0.55 tolerated(0.52) benign(0.003) TCGA-CG-5726-01 5 70805815 70805815 C A BDP1 Missense_Mutation p.P966T 0.39 tolerated(0.1) probably_damaging(0.957) TCGA-CG-5726-01 5 7414769 7414769 C T ADCY2 Silent p.I98I 0.35 TCGA-CG-5726-01 5 76264715 76264715 C T CRHBP 3'UTR 0.05 TCGA-CG-5726-01 5 77536745 77536745 T C AP3B1 Missense_Mutation p.K74E 0.06 deleterious(0) benign(0.18) TCGA-CG-5726-01 5 7892923 7892923 G A MTRR Missense_Mutation p.R512Q 0.34 deleterious(0.04) probably_damaging(0.987) TCGA-CG-5726-01 5 82835880 82835880 C T VCAN Missense_Mutation p.T2353M 0.36 tolerated(0.23) benign(0.042) TCGA-CG-5726-01 5 82850774 82850774 G T VCAN Splice_Site p.X3218_splice 0.32 TCGA-CG-5726-01 5 86659293 86659293 T C RASA1 Missense_Mutation p.Y528H 0.42 tolerated(0.12) probably_damaging(0.995) TCGA-CG-5726-01 5 87491918 87491918 T - TMEM161B 3'UTR 0.72 TCGA-CG-5726-01 5 89814745 89814748 TCTC - LYSMD3 Frame_Shift_Del p.R270Kfs*39 0.47 TCGA-CG-5726-01 5 89939634 89939634 C G GPR98 Nonsense_Mutation p.Y856* 0.35 TCGA-CG-5726-01 5 89939651 89939651 G T GPR98 Missense_Mutation p.S862I 0.25 possibly_damaging(0.766) TCGA-CG-5726-01 6 107780431 107780431 G - PDSS2 Frame_Shift_Del p.P20Rfs*33 0.47 TCGA-CG-5726-01 6 10830846 10830846 G A MAK Silent p.D12D 0.41 TCGA-CG-5726-01 6 108985249 108985249 G - FOXO3 Frame_Shift_Del p.G406Dfs*35 0.32 TCGA-CG-5726-01 6 109481930 109481930 T G CEP57L1 Intron 0.10 TCGA-CG-5726-01 6 111695978 111695978 G A REV3L Nonsense_Mutation p.R1194* 0.30 TCGA-CG-5726-01 6 11575811 11575811 T G TMEM170B 3'UTR 0.39 TCGA-CG-5726-01 6 117894769 117894769 C T GOPC Missense_Mutation p.R226Q 0.41 tolerated(0.09) possibly_damaging(0.581) TCGA-CG-5726-01 6 12120205 12120206 - A HIVEP1 Frame_Shift_Ins p.I62Nfs*15 0.27 TCGA-CG-5726-01 6 123376954 123376954 T - CLVS2 Frame_Shift_Del p.L228Cfs*6 0.34 TCGA-CG-5726-01 6 125619868 125619868 G A HDDC2 Nonsense_Mutation p.R101* 0.05 TCGA-CG-5726-01 6 128291226 128291226 A - PTPRK 3'UTR 0.53 TCGA-CG-5726-01 6 129766950 129766950 G A LAMA2 Missense_Mutation p.R2138Q 0.42 deleterious(0) probably_damaging(1) TCGA-CG-5726-01 6 133108570 133108570 T C SLC18B1 Intron 0.37 TCGA-CG-5726-01 6 13365208 13365208 G A GFOD1 Missense_Mutation p.R314C 0.17 deleterious(0) probably_damaging(0.978) TCGA-CG-5726-01 6 133846386 133846386 A - EYA4 Frame_Shift_Del p.K613Sfs*24 0.25 TCGA-CG-5726-01 6 135240004 135240004 A G ALDH8A1 Missense_Mutation p.V338A 0.16 deleterious(0.01) possibly_damaging(0.753) TCGA-CG-5726-01 6 13639807 13639807 C T RANBP9 Missense_Mutation p.A505T 0.34 tolerated(0.34) benign(0.013) TCGA-CG-5726-01 6 136926362 136926362 T C MAP3K5 Silent p.Q888Q 0.39 TCGA-CG-5726-01 6 151672225 151672225 C T AKAP12 Missense_Mutation p.T900M 0.47 tolerated(0.11) benign(0.074) TCGA-CG-5726-01 6 151773568 151773568 T - C6orf211 5'UTR 0.42 TCGA-CG-5726-01 6 151790214 151790214 A G C6orf211 Missense_Mutation p.Y432C 0.16 deleterious(0) probably_damaging(0.981) TCGA-CG-5726-01 6 152540160 152540160 C T SYNE1 Missense_Mutation p.C7341Y 0.04 benign(0.141) TCGA-CG-5726-01 6 152623111 152623111 C T SYNE1 Missense_Mutation p.A5812T 0.17 probably_damaging(0.995) TCGA-CG-5726-01 6 155114112 155114112 T C SCAF8 Splice_Site p.X159_splice 0.21 TCGA-CG-5726-01 6 158925205 158925205 C T TULP4 Missense_Mutation p.R1504W 0.50 deleterious(0) probably_damaging(0.999) TCGA-CG-5726-01 6 159399331 159399331 T - RSPH3 Frame_Shift_Del p.T445Pfs*15 0.35 TCGA-CG-5726-01 6 166844007 166844007 C T RPS6KA2 Silent p.S513S 0.07 TCGA-CG-5726-01 6 167417716 167417716 T - FGFR1OP Intron 0.32 TCGA-CG-5726-01 6 170059556 170059556 C A WDR27 Silent p.A396A 0.26 TCGA-CG-5726-01 6 17616300 17616300 A G NUP153 3'UTR 0.04 TCGA-CG-5726-01 6 18122487 18122487 G A NHLRC1 Silent p.H117H 0.43 TCGA-CG-5726-01 6 18222307 18222307 A - KDM1B 3'UTR 0.30 TCGA-CG-5726-01 6 20126880 20126880 A C MBOAT1 Missense_Mutation p.S194R 0.15 deleterious(0.03) probably_damaging(0.988) TCGA-CG-5726-01 6 24436892 24436892 C T GPLD1 Missense_Mutation p.R757Q 0.45 deleterious(0.04) benign(0.22) TCGA-CG-5726-01 6 24437377 24437377 C T GPLD1 Missense_Mutation p.V721I 0.32 tolerated(0.21) benign(0.009) TCGA-CG-5726-01 6 24718771 24718773 CTC - C6orf62 In_Frame_Del p.E42del 0.31 TCGA-CG-5726-01 6 24718988 24718989 TT - C6orf62 5'UTR 0.29 TCGA-CG-5726-01 6 26156607 26156607 C T HIST1H1E 5'UTR 0.29 TCGA-CG-5726-01 6 26509183 26509183 C - BTN1A1 Frame_Shift_Del p.L456Sfs*15 0.34 TCGA-CG-5726-01 6 26598635 26598635 G A ABT1 Missense_Mutation p.R194H 0.35 tolerated(0.28) benign(0.006) TCGA-CG-5726-01 6 2749574 2749574 G A MYLK4 5'UTR 0.40 TCGA-CG-5726-01 6 27835239 27835241 CTT - HIST1H1B In_Frame_Del p.K23del 0.58 TCGA-CG-5726-01 6 29408484 29408484 C T OR10C1 Missense_Mutation p.A231V 0.36 deleterious(0.05) benign(0.002) TCGA-CG-5726-01 6 30229066 30229066 G A HCG17 Intron 0.06 TCGA-CG-5726-01 6 30571998 30571998 G A PPP1R10 Missense_Mutation p.A432V 0.41 deleterious(0.04) possibly_damaging(0.603) TCGA-CG-5726-01 6 30954121 30954121 G A MUC21 Missense_Mutation p.V57I 0.05 tolerated_low_confidence(0.61) unknown(0) TCGA-CG-5726-01 6 31323280 31323280 T A HLA-B Missense_Mutation p.I237F 0.11 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-CG-5726-01 6 31610030 31610031 - A BAG6 Frame_Shift_Ins p.T702Yfs*23 0.39 TCGA-CG-5726-01 6 31691442 31691442 C T C6orf25 Missense_Mutation p.R30W 0.32 deleterious_low_confidence(0) possibly_damaging(0.884) TCGA-CG-5726-01 6 31749307 31749307 C T VARS Missense_Mutation p.R832Q 0.45 deleterious(0) probably_damaging(0.995) TCGA-CG-5726-01 6 31779305 31779305 G A HSPA1L Missense_Mutation p.P149S 0.12 deleterious_low_confidence(0) benign(0.092) TCGA-CG-5726-01 6 31783569 31783569 C T HSPA1A Silent p.G12G 0.30 TCGA-CG-5726-01 6 31868445 31868445 A G ZBTB12 Missense_Mutation p.V213A 0.38 deleterious(0.03) benign(0.153) TCGA-CG-5726-01 6 32166717 32166717 G A NOTCH4 Silent p.D1507D 0.05 TCGA-CG-5726-01 6 32805788 32805788 G - TAP2 Frame_Shift_Del p.L75* 0.16 TCGA-CG-5726-01 6 32818901 32818902 CT - TAP1 Frame_Shift_Del p.E350Gfs*7 0.21 TCGA-CG-5726-01 6 33169558 33169558 T - SLC39A7 Frame_Shift_Del p.F151Lfs*87 0.27 TCGA-CG-5726-01 6 33245224 33245226 CTT - B3GALT4 In_Frame_Del p.L11del 0.30 TCGA-CG-5726-01 6 34951143 34951143 C - ANKS1A Frame_Shift_Del p.P320Hfs*25 0.35 TCGA-CG-5726-01 6 39895325 39895325 C T MOCS1 5'UTR 0.41 TCGA-CG-5726-01 6 401701 401701 G A IRF4 Silent p.A341A 0.35 TCGA-CG-5726-01 6 41129134 41129134 G A TREM2 Silent p.D86D 0.04 TCGA-CG-5726-01 6 41657522 41657522 G A TFEB Missense_Mutation p.R166C 0.33 deleterious(0.04) benign(0.005) TCGA-CG-5726-01 6 41752759 41752759 G - PRICKLE4 Frame_Shift_Del p.V111* 0.26 TCGA-CG-5726-01 6 44081904 44081904 T C MRPL14 Silent p.V38V 0.03 TCGA-CG-5726-01 6 44144338 44144338 T C CAPN11 Missense_Mutation p.V341A 0.38 deleterious(0) possibly_damaging(0.802) TCGA-CG-5726-01 6 44145055 44145057 TGT - CAPN11 In_Frame_Del p.V441del 0.48 TCGA-CG-5726-01 6 44249924 44249924 C T TCTE1 Missense_Mutation p.A407T 0.40 deleterious(0.02) probably_damaging(0.99) TCGA-CG-5726-01 6 46660256 46660256 A C TDRD6 Missense_Mutation p.D1464A 0.38 deleterious(0) probably_damaging(0.998) TCGA-CG-5726-01 6 46968003 46968003 A G GPR110 Missense_Mutation p.S897P 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.888) TCGA-CG-5726-01 6 49753713 49753713 G A PGK2 Silent p.G396G 0.18 TCGA-CG-5726-01 6 53989529 53989529 C T MLIP Missense_Mutation p.R160W 0.34 deleterious(0) probably_damaging(0.95) TCGA-CG-5726-01 6 56469171 56469171 G T DST Intron 0.33 TCGA-CG-5726-01 6 56485185 56485185 C A DST Intron 0.44 TCGA-CG-5726-01 6 57013493 57013493 T C ZNF451 Splice_Site p.X870_splice 0.20 TCGA-CG-5726-01 6 70500356 70500357 - A LMBRD1 Frame_Shift_Ins p.L26Ffs*10 0.27 TCGA-CG-5726-01 6 71235557 71235558 - T FAM135A Frame_Shift_Ins p.S926Ffs*3 0.28 TCGA-CG-5726-01 6 74304881 74304881 A - SLC17A5 Frame_Shift_Del p.F469Lfs*33 0.34 TCGA-CG-5726-01 6 74472143 74472143 G A CD109 Silent p.T265T 0.17 TCGA-CG-5726-01 6 76751759 76751760 - T IMPG1 Frame_Shift_Ins p.M51Nfs*29 0.28 TCGA-CG-5726-01 6 7879334 7879334 C T BMP6 Missense_Mutation p.A411V 0.41 tolerated(0.61) probably_damaging(0.928) TCGA-CG-5726-01 6 7883385 7883385 C T TXNDC5 Missense_Mutation p.E431K 0.35 deleterious(0) probably_damaging(0.998) TCGA-CG-5726-01 6 80629257 80629257 A - ELOVL4 Frame_Shift_Del p.F183Lfs*5 0.10 TCGA-CG-5726-01 6 8097536 8097536 C T EEF1E1 Silent p.G84G 0.37 TCGA-CG-5726-01 6 88776181 88776181 G A SPACA1 3'UTR 0.42 TCGA-CG-5726-01 6 89554159 89554159 T - RNGTT Frame_Shift_Del p.M396* 0.19 TCGA-CG-5726-01 6 89871856 89871856 G A PM20D2 Silent p.L395L 0.33 TCGA-CG-5726-01 6 90039279 90039279 A - UBE2J1 3'UTR 0.32 TCGA-CG-5726-01 6 90354841 90354841 G A MDN1 Nonsense_Mutation p.R5499* 0.48 TCGA-CG-5726-01 6 97711302 97711302 A G MMS22L Missense_Mutation p.M284T 0.09 tolerated(0.84) benign(0) TCGA-CG-5726-01 6 99282812 99282812 C T POU3F2 Silent p.A21A 0.35 TCGA-CG-5726-01 7 100200003 100200003 C T PCOLCE 5'UTR 0.15 TCGA-CG-5726-01 7 100279327 100279327 G - GIGYF1 3'UTR 0.45 TCGA-CG-5726-01 7 100468329 100468329 C A TRIP6 Silent p.A321A 0.21 TCGA-CG-5726-01 7 100479844 100479844 C G SRRT Missense_Mutation p.A190G 0.24 deleterious(0.03) probably_damaging(0.994) TCGA-CG-5726-01 7 100487991 100487991 G T ACHE 3'UTR 0.43 TCGA-CG-5726-01 7 100488859 100488859 G A ACHE Missense_Mutation p.R552W 0.20 tolerated(0.17) possibly_damaging(0.872) TCGA-CG-5726-01 7 100800008 100800008 T C AP1S1 Missense_Mutation p.M46T 0.17 tolerated(0.1) benign(0.02) TCGA-CG-5726-01 7 102760123 102760123 A - NAPEPLD Frame_Shift_Del p.F281Sfs*14 0.25 TCGA-CG-5726-01 7 102962984 102962984 G A DNAJC2 Missense_Mutation p.R303W 0.21 deleterious(0) possibly_damaging(0.803) TCGA-CG-5726-01 7 103124100 103124101 - G RELN Frame_Shift_Ins p.L3394Pfs*23 0.25 TCGA-CG-5726-01 7 104783602 104783602 T C SRPK2 Missense_Mutation p.Y330C 0.04 tolerated(0.18) benign(0.003) TCGA-CG-5726-01 7 1049694 1049694 T - C7orf50 Frame_Shift_Del p.K72Rfs*87 0.45 TCGA-CG-5726-01 7 105182902 105182902 A - RINT1 Frame_Shift_Del p.N109Mfs*28 0.13 TCGA-CG-5726-01 7 105656435 105656435 C T CDHR3 Missense_Mutation p.P464S 0.24 tolerated(0.58) benign(0.063) TCGA-CG-5726-01 7 105908966 105908966 T - NAMPT Frame_Shift_Del p.K229Nfs*22 0.42 TCGA-CG-5726-01 7 111540481 111540481 C T DOCK4 Missense_Mutation p.V477M 0.33 deleterious(0.03) possibly_damaging(0.885) TCGA-CG-5726-01 7 112423986 112423986 A G TMEM168 Missense_Mutation p.S299P 0.04 tolerated(0.09) possibly_damaging(0.629) TCGA-CG-5726-01 7 116165024 116165024 C T CAV1 5'UTR 0.28 TCGA-CG-5726-01 7 11630185 11630185 G A THSD7A Missense_Mutation p.T452M 0.32 deleterious(0.01) probably_damaging(0.978) TCGA-CG-5726-01 7 117003505 117003505 A - ASZ1 3'UTR 0.62 TCGA-CG-5726-01 7 117120192 117120192 T - CFTR Frame_Shift_Del p.F17Sfs*8 0.27 TCGA-CG-5726-01 7 117432425 117432425 G A CTTNBP2 Silent p.S275S 0.57 TCGA-CG-5726-01 7 120629903 120629903 T C CPED1 Silent p.G76G 0.57 TCGA-CG-5726-01 7 120911388 120911388 A - CPED1 Frame_Shift_Del p.K926Nfs*6 0.24 TCGA-CG-5726-01 7 121651782 121651782 T C PTPRZ1 Silent p.S894S 0.31 TCGA-CG-5726-01 7 122033276 122033276 C T CADPS2 Silent p.S994S 0.67 TCGA-CG-5726-01 7 122808565 122808565 C G SLC13A1 Missense_Mutation p.V202L 0.06 tolerated(0.53) benign(0.006) TCGA-CG-5726-01 7 126746712 126746712 A C GRM8 Missense_Mutation p.Y189D 0.56 deleterious(0) probably_damaging(0.999) TCGA-CG-5726-01 7 127014002 127014002 G A ZNF800 Missense_Mutation p.P463L 0.51 tolerated(0.21) benign(0.007) TCGA-CG-5726-01 7 127225285 127225285 G A GCC1 5'UTR 0.30 TCGA-CG-5726-01 7 128496836 128496836 C T FLNC Silent p.G2474G 0.53 TCGA-CG-5726-01 7 132470338 132470338 A - CHCHD3 3'UTR 0.34 TCGA-CG-5726-01 7 133948672 133948672 G A LRGUK Missense_Mutation p.R808H 0.56 tolerated(0.24) benign(0.002) TCGA-CG-5726-01 7 138145487 138145487 G A TRIM24 Missense_Mutation p.S65N 0.68 tolerated(0.16) benign(0.443) TCGA-CG-5726-01 7 138394473 138394473 G A ATP6V0A4 Silent p.I775I 0.55 TCGA-CG-5726-01 7 138764890 138764890 G A ZC3HAV1 Missense_Mutation p.A266V 0.10 tolerated(0.08) probably_damaging(0.939) TCGA-CG-5726-01 7 138774379 138774379 A - ZC3HAV1 Frame_Shift_Del p.F145Lfs*49 0.13 TCGA-CG-5726-01 7 138872157 138872157 C T TTC26 Silent p.G475G 0.03 TCGA-CG-5726-01 7 139107068 139107068 C T LUC7L2 Silent p.R453R 0.04 TCGA-CG-5726-01 7 13971290 13971290 G C ETV1 Silent p.R213R 0.55 TCGA-CG-5726-01 7 140500184 140500184 C T BRAF Missense_Mutation p.A320T 0.23 tolerated(0.46) benign(0) TCGA-CG-5726-01 7 142494849 142494849 C T TRBJ2-5 Silent p.L16L 0.16 TCGA-CG-5726-01 7 142562074 142562074 C T EPHB6 Silent p.S172S 0.31 TCGA-CG-5726-01 7 142880943 142880943 C - TAS2R39 Frame_Shift_Del p.L146Ffs*5 0.10 TCGA-CG-5726-01 7 143748348 143748348 T G OR2A5 Missense_Mutation p.L285R 0.47 deleterious(0) probably_damaging(0.986) TCGA-CG-5726-01 7 143881391 143881391 C A CTAGE4 Missense_Mutation p.H265Q 0.34 tolerated(1) benign(0.004) TCGA-CG-5726-01 7 146997331 146997331 C A CNTNAP2 Silent p.R483R 0.62 TCGA-CG-5726-01 7 1478544 1478544 G - MICALL2 Frame_Shift_Del p.P685Lfs*40 0.28 TCGA-CG-5726-01 7 148910865 148910865 G A ZNF282 Missense_Mutation p.R380H 0.15 tolerated(0.08) possibly_damaging(0.67) TCGA-CG-5726-01 7 149515850 149515850 G - SSPO RNA 0.24 TCGA-CG-5726-01 7 150217889 150217889 T - GIMAP7 Frame_Shift_Del p.F277Lfs*28 0.19 TCGA-CG-5726-01 7 150711125 150711125 C T NOS3 Silent p.F1160F 0.27 TCGA-CG-5726-01 7 150932267 150932267 T C CHPF2 Missense_Mutation p.Y133H 0.20 deleterious(0) probably_damaging(0.947) TCGA-CG-5726-01 7 151127139 151127139 G T CRYGN Missense_Mutation p.L182I 0.04 benign(0.364) TCGA-CG-5726-01 7 151921130 151921132 TCT - KMT2C In_Frame_Del p.E1097del 0.51 TCGA-CG-5726-01 7 1538951 1538951 G A INTS1 Missense_Mutation p.T297M 0.10 deleterious(0.02) benign(0.205) TCGA-CG-5726-01 7 154754138 154754138 C T PAXIP1 Missense_Mutation p.A674T 0.57 deleterious(0) unknown(0) TCGA-CG-5726-01 7 156554834 156554834 C A LMBR1 Missense_Mutation p.K226N 0.61 deleterious(0.03) probably_damaging(0.999) TCGA-CG-5726-01 7 156746803 156746803 T C NOM1 Silent p.S373S 0.54 TCGA-CG-5726-01 7 157049683 157049683 G A UBE3C Missense_Mutation p.R1009H 0.10 deleterious(0.01) probably_damaging(0.993) TCGA-CG-5726-01 7 157177588 157177588 A G DNAJB6 Missense_Mutation p.H169R 0.21 tolerated(0.14) unknown(0) TCGA-CG-5726-01 7 22533351 22533351 G A STEAP1B Silent p.H63H 0.27 TCGA-CG-5726-01 7 2290718 2290718 C T NUDT1 3'UTR 0.22 TCGA-CG-5726-01 7 2472864 2472864 G A CHST12 Missense_Mutation p.R197H 0.31 tolerated(0.18) benign(0.024) TCGA-CG-5726-01 7 2618149 2618149 G A IQCE Missense_Mutation p.D207N 0.62 tolerated(0.09) possibly_damaging(0.586) TCGA-CG-5726-01 7 26245999 26245999 A - CBX3 Frame_Shift_Del p.K14Nfs*23 0.27 TCGA-CG-5726-01 7 27194723 27194723 C T HOXA7 Silent p.A166A 0.11 TCGA-CG-5726-01 7 30363271 30363271 T G ZNRF2 Silent p.P161P 0.20 TCGA-CG-5726-01 7 30721549 30721549 C T CRHR2 Missense_Mutation p.V98I 0.16 tolerated(0.5) benign(0.03) TCGA-CG-5726-01 7 32110073 32110073 G A PDE1C Intron 0.26 TCGA-CG-5726-01 7 32909149 32909149 C T KBTBD2 Silent p.R560R 0.26 TCGA-CG-5726-01 7 33139022 33139022 G A RP9 Silent p.C70C 0.05 TCGA-CG-5726-01 7 35673349 35673349 G A HERPUD2 Missense_Mutation p.T391I 0.27 deleterious(0) probably_damaging(0.935) TCGA-CG-5726-01 7 38268436 38268436 A G STARD3NL Missense_Mutation p.K229R 0.10 tolerated(0.18) probably_damaging(0.98) TCGA-CG-5726-01 7 4198100 4198100 A G SDK1 Missense_Mutation p.Y1549C 0.28 deleterious(0) probably_damaging(1) TCGA-CG-5726-01 7 42004864 42004864 G A GLI3 Silent p.D1269D 0.27 TCGA-CG-5726-01 7 42005573 42005573 G - GLI3 Frame_Shift_Del p.P1033Rfs*46 0.20 TCGA-CG-5726-01 7 43447289 43447289 A G HECW1 Missense_Mutation p.K254E 0.25 tolerated(0.43) benign(0.392) TCGA-CG-5726-01 7 4901238 4901238 T - PAPOLB Frame_Shift_Del p.K67Nfs*2 0.21 TCGA-CG-5726-01 7 5267771 5267771 C T WIPI2 Silent p.A350A 0.13 TCGA-CG-5726-01 7 5334518 5334519 - G SLC29A4 Frame_Shift_Ins p.M193Dfs*75 0.34 TCGA-CG-5726-01 7 5347923 5347923 C T TNRC18 Silent p.S2907S 0.22 TCGA-CG-5726-01 7 5391519 5391519 A - TNRC18 Frame_Shift_Del p.C1801Vfs*232 0.57 TCGA-CG-5726-01 7 5399108 5399108 G A TNRC18 Missense_Mutation p.A1585V 0.08 benign(0.093) TCGA-CG-5726-01 7 55229284 55229284 C T EGFR Nonsense_Mutation p.R531* 0.28 TCGA-CG-5726-01 7 5963564 5963564 A - CCZ1 Frame_Shift_Del p.N457Mfs*4 0.16 TCGA-CG-5726-01 7 5965976 5965977 TG - RSPH10B 3'UTR 0.25 TCGA-CG-5726-01 7 65595732 65595732 T C AC068533.7 Missense_Mutation p.V199A 0.19 deleterious(0.05) possibly_damaging(0.517) TCGA-CG-5726-01 7 69064844 69064844 C T AUTS2 Missense_Mutation p.R69W 0.21 deleterious_low_confidence(0.01) probably_damaging(0.988) TCGA-CG-5726-01 7 70236607 70236607 C A AUTS2 Missense_Mutation p.L603I 0.04 deleterious(0.01) probably_damaging(0.998) TCGA-CG-5726-01 7 70597946 70597946 C T WBSCR17 Missense_Mutation p.A53V 0.32 tolerated_low_confidence(0.32) benign(0) TCGA-CG-5726-01 7 73279593 73279593 A G WBSCR28 Missense_Mutation p.S115G 0.12 tolerated(1) benign(0) TCGA-CG-5726-01 7 75398905 75398906 - C CCL26 3'UTR 0.23 TCGA-CG-5726-01 7 81372788 81372788 C T HGF Splice_Site p.X249_splice 0.06 TCGA-CG-5726-01 7 91502949 91502949 T - MTERF Frame_Shift_Del p.R387Dfs*6 0.25 TCGA-CG-5726-01 7 92762390 92762390 T A SAMD9L Silent p.G965G 0.04 TCGA-CG-5726-01 7 94024188 94024188 A G COL1A2 5'UTR 0.60 TCGA-CG-5726-01 7 94040372 94040372 C A COL1A2 Missense_Mutation p.P419H 0.74 probably_damaging(0.993) TCGA-CG-5726-01 7 98608719 98608719 G T TRRAP Silent p.P3647P 0.11 TCGA-CG-5726-01 7 99171232 99171235 TATC - ZNF655 3'UTR 0.35 TCGA-CG-5726-01 7 99313472 99313472 G A CYP3A7 Silent p.I193I 0.60 TCGA-CG-5726-01 8 100523708 100523709 - A VPS13B Frame_Shift_Ins p.T1561Nfs*9 0.16 TCGA-CG-5726-01 8 103237206 103237206 C T RRM2B Missense_Mutation p.R121H 0.28 deleterious_low_confidence(0.02) possibly_damaging(0.466) TCGA-CG-5726-01 8 103289349 103289349 T - UBR5 Frame_Shift_Del p.E2121Kfs*28 0.24 TCGA-CG-5726-01 8 103840907 103840907 C A AZIN1 Splice_Site p.X412_splice 0.19 TCGA-CG-5726-01 8 104415469 104415469 G A SLC25A32 Missense_Mutation p.P159S 0.22 tolerated(0.77) benign(0) TCGA-CG-5726-01 8 105257232 105257232 G T RIMS2 Missense_Mutation p.Q1141H 0.17 deleterious_low_confidence(0) possibly_damaging(0.891) TCGA-CG-5726-01 8 10583646 10583646 G - SOX7 Frame_Shift_Del p.L309Wfs*14 0.35 TCGA-CG-5726-01 8 108913151 108913151 C T RSPO2 3'UTR 0.21 TCGA-CG-5726-01 8 110510973 110510973 G A PKHD1L1 Missense_Mutation p.A3601T 0.15 tolerated(0.06) possibly_damaging(0.662) TCGA-CG-5726-01 8 119936627 119936627 T - TNFRSF11B Frame_Shift_Del p.I398* 0.19 TCGA-CG-5726-01 8 120118226 120118226 C T COLEC10 Silent p.G210G 0.13 TCGA-CG-5726-01 8 121256240 121256240 A - COL14A1 Frame_Shift_Del p.T826Pfs*31 0.26 TCGA-CG-5726-01 8 121823609 121823609 C T SNTB1 Missense_Mutation p.A159T 0.05 deleterious(0) probably_damaging(0.969) TCGA-CG-5726-01 8 123964440 123964440 C T ZHX2 Silent p.G230G 0.22 TCGA-CG-5726-01 8 124664458 124664458 C T KLHL38 Missense_Mutation p.A237T 0.03 deleterious(0.04) benign(0.056) TCGA-CG-5726-01 8 125498553 125498554 AC - RNF139 Frame_Shift_Del p.Q222Vfs*40 0.18 TCGA-CG-5726-01 8 126062904 126062904 C T KIAA0196 Missense_Mutation p.D701N 0.15 deleterious(0) probably_damaging(1) TCGA-CG-5726-01 8 12950293 12950293 T A DLC1 Missense_Mutation p.I1190F 0.23 deleterious(0) possibly_damaging(0.737) TCGA-CG-5726-01 8 12957673 12957673 T C DLC1 Missense_Mutation p.N725D 0.21 tolerated(0.13) benign(0.097) TCGA-CG-5726-01 8 132052107 132052107 C T ADCY8 Missense_Mutation p.R158H 0.13 tolerated(0.23) possibly_damaging(0.816) TCGA-CG-5726-01 8 135649909 135649909 C T ZFAT Silent p.T81T 0.24 TCGA-CG-5726-01 8 140630506 140630506 C T KCNK9 Missense_Mutation p.V374I 0.17 tolerated(0.77) benign(0.001) TCGA-CG-5726-01 8 140630715 140630715 G A KCNK9 Missense_Mutation p.S304L 0.20 tolerated(0.76) benign(0) TCGA-CG-5726-01 8 141799597 141799597 G A PTK2 Missense_Mutation p.R385W 0.22 deleterious(0.01) probably_damaging(0.947) TCGA-CG-5726-01 8 143857448 143857448 G A LYNX1 5'UTR 0.33 TCGA-CG-5726-01 8 143958488 143958488 C - CYP11B1 Frame_Shift_Del p.S183Afs*2 0.23 TCGA-CG-5726-01 8 144650000 144650000 C T MROH6 Missense_Mutation p.R608Q 0.20 tolerated(0.18) benign(0.069) TCGA-CG-5726-01 8 144695077 144695077 G A TSTA3 3'UTR 0.18 TCGA-CG-5726-01 8 144695756 144695756 C T TSTA3 Missense_Mutation p.V250I 0.21 tolerated(0.32) benign(0.016) TCGA-CG-5726-01 8 144697076 144697076 C T TSTA3 Missense_Mutation p.V91M 0.23 tolerated(0.59) benign(0.025) TCGA-CG-5726-01 8 144920885 144920885 G A NRBP2 Silent p.R269R 0.19 TCGA-CG-5726-01 8 144992113 144992113 C T PLEC Missense_Mutation p.R4096H 0.16 probably_damaging(0.999) TCGA-CG-5726-01 8 144997254 144997254 C T PLEC Silent p.A2418A 0.35 TCGA-CG-5726-01 8 145052082 145052082 G A PARP10 Silent p.G908G 0.19 TCGA-CG-5726-01 8 145106174 145106174 C T OPLAH 3'UTR 0.18 TCGA-CG-5726-01 8 145235115 145235115 G A MROH1 Missense_Mutation p.G112D 0.16 tolerated(0.17) benign(0) TCGA-CG-5726-01 8 145660224 145660224 A G TONSL Missense_Mutation p.Y1019H 0.19 deleterious(0) probably_damaging(0.999) TCGA-CG-5726-01 8 145948631 145948631 G A ZNF251 Silent p.G138G 0.19 TCGA-CG-5726-01 8 17611619 17611619 T - MTUS1 Frame_Shift_Del p.A567Qfs*4 0.19 TCGA-CG-5726-01 8 1774246 1774246 C T ARHGEF10 Intron 0.10 TCGA-CG-5726-01 8 17810630 17810630 A - PCM1 Frame_Shift_Del p.M410Wfs*39 0.18 TCGA-CG-5726-01 8 19816811 19816811 G C LPL Missense_Mutation p.E353D 0.17 tolerated(0.39) benign(0.003) TCGA-CG-5726-01 8 20112701 20112701 G - LZTS1 5'UTR 0.23 TCGA-CG-5726-01 8 2056577 2056577 A G MYOM2 Missense_Mutation p.E1000G 0.18 tolerated(0.15) probably_damaging(0.999) TCGA-CG-5726-01 8 21840230 21840230 A G XPO7 Missense_Mutation p.K395R 0.04 tolerated(0.22) benign(0.002) TCGA-CG-5726-01 8 22550362 22550362 C T EGR3 Silent p.A32A 0.16 TCGA-CG-5726-01 8 23429052 23429052 C A SLC25A37 Missense_Mutation p.P234Q 0.18 deleterious(0) probably_damaging(1) TCGA-CG-5726-01 8 25325861 25325861 G A CDCA2 Missense_Mutation p.G223S 0.19 tolerated(0.76) benign(0.108) TCGA-CG-5726-01 8 25364584 25364584 C T CDCA2 Missense_Mutation p.T801M 0.04 tolerated(0.27) benign(0.002) TCGA-CG-5726-01 8 26481759 26481759 T C DPYSL2 Silent p.H138H 0.21 TCGA-CG-5726-01 8 26722629 26722629 C T ADRA1A 5'UTR 0.28 TCGA-CG-5726-01 8 27097516 27097516 G T STMN4 Missense_Mutation p.A188D 0.04 deleterious(0) possibly_damaging(0.903) TCGA-CG-5726-01 8 27398071 27398071 G T EPHX2 Missense_Mutation p.G426V 0.20 deleterious(0.01) benign(0.174) TCGA-CG-5726-01 8 2818731 2818731 C A CSMD1 Missense_Mutation p.A3212S 0.17 possibly_damaging(0.452) TCGA-CG-5726-01 8 28574452 28574452 T C EXTL3 Silent p.S292S 0.04 TCGA-CG-5726-01 8 2886894 2886894 C T CSMD1 Missense_Mutation p.R2601Q 0.14 benign(0.001) TCGA-CG-5726-01 8 30210344 30210344 C T TUBBP1 RNA 0.21 TCGA-CG-5726-01 8 30889958 30889958 T C PURG Missense_Mutation p.E114G 0.12 deleterious(0) possibly_damaging(0.572) TCGA-CG-5726-01 8 35608257 35608257 G A UNC5D Missense_Mutation p.C698Y 0.05 deleterious(0) benign(0.332) TCGA-CG-5726-01 8 37735089 37735089 G A RAB11FIP1 Intron 0.12 TCGA-CG-5726-01 8 3855606 3855606 G A CSMD1 Missense_Mutation p.R213C 0.22 probably_damaging(0.999) TCGA-CG-5726-01 8 38775508 38775508 A G PLEKHA2 Missense_Mutation p.N21D 0.18 deleterious(0.03) benign(0.068) TCGA-CG-5726-01 8 38851177 38851177 G A TM2D2 Silent p.F106F 0.22 TCGA-CG-5726-01 8 41753883 41753883 C T ANK1 Missense_Mutation p.R39Q 0.23 tolerated(0.07) benign(0.3) TCGA-CG-5726-01 8 41792077 41792077 C T KAT6A Missense_Mutation p.E1221K 0.04 unknown(0) TCGA-CG-5726-01 8 42587259 42587259 C T CHRNB3 Missense_Mutation p.S270L 0.17 deleterious(0) probably_damaging(1) TCGA-CG-5726-01 8 48752574 48752574 T C PRKDC Intron 0.33 TCGA-CG-5726-01 8 48883979 48883979 A - MCM4 Frame_Shift_Del p.T629Qfs*18 0.23 TCGA-CG-5726-01 8 49647753 49647753 C T EFCAB1 5'UTR 0.26 TCGA-CG-5726-01 8 53852514 53852514 G A NPBWR1 Missense_Mutation p.G16D 0.30 tolerated(0.44) benign(0.001) TCGA-CG-5726-01 8 55533629 55533629 G A RP1 Missense_Mutation p.A35T 0.22 deleterious(0) probably_damaging(0.914) TCGA-CG-5726-01 8 57080054 57080054 G T PLAG1 Missense_Mutation p.A84D 0.15 deleterious(0) probably_damaging(0.995) TCGA-CG-5726-01 8 59404268 59404268 T C CYP7A1 Silent p.G427G 0.03 TCGA-CG-5726-01 8 62593555 62593555 A - ASPH Frame_Shift_Del p.F98Lfs*10 0.17 TCGA-CG-5726-01 8 6420295 6420295 C T ANGPT2 Missense_Mutation p.R54H 0.20 tolerated(0.18) probably_damaging(0.927) TCGA-CG-5726-01 8 68062155 68062155 G A CSPP1 Missense_Mutation p.A700T 0.14 tolerated(0.75) benign(0.011) TCGA-CG-5726-01 8 68172074 68172074 T C ARFGEF1 Silent p.L737L 0.21 TCGA-CG-5726-01 8 68658444 68658444 C T CPA6 5'UTR 0.24 TCGA-CG-5726-01 8 71087086 71087086 C T NCOA2 Missense_Mutation p.A90T 0.06 tolerated(0.1) possibly_damaging(0.459) TCGA-CG-5726-01 8 75233270 75233270 C - JPH1 Frame_Shift_Del p.E85Sfs*70 0.36 TCGA-CG-5726-01 8 77616635 77616635 C T ZFHX4 Silent p.R104R 0.21 TCGA-CG-5726-01 8 77763270 77763270 C A ZFHX4 Silent p.P1371P 0.21 TCGA-CG-5726-01 8 8185961 8185961 C G SGK223 Silent p.L777L 0.29 TCGA-CG-5726-01 8 82196891 82196891 T C FABP5 3'UTR 0.19 TCGA-CG-5726-01 8 8234853 8234853 C T SGK223 Missense_Mutation p.V356I 0.28 benign(0) TCGA-CG-5726-01 8 92261830 92261830 T - SLC26A7 5'UTR 0.24 TCGA-CG-5726-01 8 93027002 93027002 G - RUNX1T1 Frame_Shift_Del p.S103Hfs*35 0.23 TCGA-CG-5726-01 8 97157104 97157104 A G GDF6 Missense_Mutation p.L352P 0.12 tolerated(0.27) probably_damaging(0.979) TCGA-CG-5726-01 8 99441238 99441238 C A KCNS2 Missense_Mutation p.S344Y 0.24 deleterious(0) probably_damaging(0.996) TCGA-CG-5726-01 8 99441332 99441332 G - KCNS2 Frame_Shift_Del p.Y377Tfs*13 0.23 TCGA-CG-5726-01 8 99468226 99468226 C T STK3 Silent p.L468L 0.14 TCGA-CG-5726-01 9 100405604 100405604 T A NCBP1 Missense_Mutation p.S115T 0.39 tolerated(0.57) benign(0.008) TCGA-CG-5726-01 9 100617364 100617364 G A FOXE1 3'UTR 0.42 TCGA-CG-5726-01 9 101540564 101540565 - G ANKS6 Frame_Shift_Ins p.Q504Pfs*11 0.13 TCGA-CG-5726-01 9 104152596 104152596 A - MRPL50 3'UTR 0.52 TCGA-CG-5726-01 9 106901627 106901627 T - SMC2 3'UTR 0.27 TCGA-CG-5726-01 9 116191654 116191655 - G C9orf43 Frame_Shift_Ins p.A460Gfs*52 0.29 TCGA-CG-5726-01 9 116269742 116269742 C T RGS3 Missense_Mutation p.R421C 0.14 deleterious(0) probably_damaging(0.98) TCGA-CG-5726-01 9 116812587 116812587 T - ZNF618 3'UTR 0.35 TCGA-CG-5726-01 9 117848975 117848975 G T TNC Silent p.T345T 0.45 TCGA-CG-5726-01 9 123898189 123898189 C T CNTRL Missense_Mutation p.R711W 0.36 possibly_damaging(0.582) TCGA-CG-5726-01 9 125643021 125643021 C T RC3H2 Missense_Mutation p.R271Q 0.33 deleterious(0) probably_damaging(0.921) TCGA-CG-5726-01 9 127616484 127616484 G C WDR38 Missense_Mutation p.V24L 0.31 deleterious(0.03) possibly_damaging(0.873) TCGA-CG-5726-01 9 129453292 129453292 C T LMX1B Silent p.D168D 0.31 TCGA-CG-5726-01 9 130864731 130864731 G A SLC25A25 Missense_Mutation p.E187K 0.31 deleterious(0) probably_damaging(0.966) TCGA-CG-5726-01 9 131482711 131482711 G T PKN3 Missense_Mutation p.Q832H 0.39 deleterious(0.01) possibly_damaging(0.534) TCGA-CG-5726-01 9 132484663 132484663 C A PRRX2 3'UTR 0.38 TCGA-CG-5726-01 9 132863396 132863396 C T GPR107 Missense_Mutation p.A342V 0.34 deleterious(0.02) benign(0.259) TCGA-CG-5726-01 9 133488372 133488372 C T FUBP3 Missense_Mutation p.R102W 0.37 deleterious(0) probably_damaging(0.997) TCGA-CG-5726-01 9 133779540 133779540 C T FIBCD1 Missense_Mutation p.D433N 0.43 tolerated(0.17) probably_damaging(0.968) TCGA-CG-5726-01 9 134072678 134072678 A G NUP214 Missense_Mutation p.E1266G 0.45 benign(0.013) TCGA-CG-5726-01 9 134183576 134183576 G A PPAPDC3 Missense_Mutation p.V240I 0.33 deleterious(0.01) benign(0.251) TCGA-CG-5726-01 9 134346320 134346320 C T PRRC2B Missense_Mutation p.T686M 0.11 tolerated(0.62) possibly_damaging(0.677) TCGA-CG-5726-01 9 134385313 134385313 C T POMT1 Missense_Mutation p.T210M 0.36 deleterious(0) probably_damaging(0.994) TCGA-CG-5726-01 9 135073412 135073412 G A NTNG2 Silent p.P91P 0.32 TCGA-CG-5726-01 9 135073809 135073809 G A NTNG2 Missense_Mutation p.G224S 0.37 deleterious(0) probably_damaging(0.998) TCGA-CG-5726-01 9 136277417 136277417 A G REXO4 Splice_Site p.X304_splice 0.03 TCGA-CG-5726-01 9 138642852 138642852 C T KCNT1 Silent p.R133R 0.47 TCGA-CG-5726-01 9 138670649 138670649 A G KCNT1 Missense_Mutation p.N904D 0.57 deleterious(0.04) possibly_damaging(0.597) TCGA-CG-5726-01 9 139390651 139390651 G T NOTCH1 Missense_Mutation p.P2514T 0.41 deleterious(0) probably_damaging(0.967) TCGA-CG-5726-01 9 139739734 139739734 T G C9orf172 Missense_Mutation p.F290V 0.27 tolerated(0.19) benign(0.047) TCGA-CG-5726-01 9 139946009 139946009 C T ENTPD2 Silent p.A113A 0.39 TCGA-CG-5726-01 9 140005168 140005168 C T DPP7 Missense_Mutation p.E471K 0.61 tolerated(0.69) benign(0.001) TCGA-CG-5726-01 9 17484353 17484353 A - CNTLN Frame_Shift_Del p.M1308* 0.18 TCGA-CG-5726-01 9 19063047 19063047 T - HAUS6 Frame_Shift_Del p.S530Vfs*12 0.34 TCGA-CG-5726-01 9 20346388 20346395 AAAACCAA CC MLLT3 3'UTR 0.38 TCGA-CG-5726-01 9 20862680 20862680 C A FOCAD Missense_Mutation p.P675H 0.42 deleterious(0) probably_damaging(1) TCGA-CG-5726-01 9 27556644 27556644 G C C9orf72 Missense_Mutation p.L336V 0.03 deleterious(0) probably_damaging(0.996) TCGA-CG-5726-01 9 312043 312043 T C DOCK8 Silent p.P206P 0.42 TCGA-CG-5726-01 9 35091693 35091693 G - PIGO Frame_Shift_Del p.R731Vfs*17 0.32 TCGA-CG-5726-01 9 35558263 35558263 G A RUSC2 Missense_Mutation p.V1044I 0.38 tolerated(0.39) probably_damaging(0.997) TCGA-CG-5726-01 9 35680775 35680777 CCT - CA9 In_Frame_Del p.L423del 0.32 TCGA-CG-5726-01 9 35811534 35811534 C T SPAG8 Missense_Mutation p.G170D 0.53 deleterious_low_confidence(0.05) unknown(0) TCGA-CG-5726-01 9 35957386 35957386 T - OR2S2 Frame_Shift_Del p.K237Rfs*13 0.34 TCGA-CG-5726-01 9 40705698 40705699 - A SPATA31A3 Frame_Shift_Ins p.H1121Tfs*2 0.14 TCGA-CG-5726-01 9 40772887 40772887 T G ZNF658 Missense_Mutation p.K796N 0.31 deleterious(0) probably_damaging(0.992) TCGA-CG-5726-01 9 70177694 70177694 G A FOXD4L5 Missense_Mutation p.A97V 0.19 tolerated(0.16) possibly_damaging(0.689) TCGA-CG-5726-01 9 72047539 72047539 C T APBA1 Silent p.G785G 0.22 TCGA-CG-5726-01 9 75404223 75404223 A - TMC1 Frame_Shift_Del p.N407Mfs*3 0.31 TCGA-CG-5726-01 9 841907 841907 G A DMRT1 Silent p.P23P 0.53 TCGA-CG-5726-01 9 86465140 86465140 G A KIF27 Missense_Mutation p.R1144W 0.45 deleterious(0) possibly_damaging(0.582) TCGA-CG-5726-01 9 86482717 86482717 C T KIF27 Missense_Mutation p.R939H 0.38 tolerated(0.16) benign(0.035) TCGA-CG-5726-01 9 92020414 92020414 G A SEMA4D 5'UTR 0.36 TCGA-CG-5726-01 9 94171958 94171958 T C NFIL3 Silent p.S353S 0.03 TCGA-CG-5726-01 9 95482892 95482892 C T BICD2 Missense_Mutation p.R251H 0.38 deleterious(0) probably_damaging(1) TCGA-CG-5726-01 9 96080171 96080171 C T WNK2 Silent p.T2252T 0.48 TCGA-CG-5726-01 9 98229700 98229700 A G PTCH1 Missense_Mutation p.V753A 0.28 deleterious(0.03) possibly_damaging(0.781) TCGA-CG-5726-01 X 102884959 102884973 TCGGAGGAGCAGTCC - TCEAL1 In_Frame_Del p.Q42_E46del 0.77 TCGA-CG-5726-01 X 107978669 107978669 G A IRS4 Silent p.I302I 0.81 TCGA-CG-5726-01 X 114239869 114239869 A G IL13RA2 Missense_Mutation p.L336P 0.05 tolerated(0.33) benign(0.002) TCGA-CG-5726-01 X 118752622 118752622 G - SEPT6 3'UTR 0.45 TCGA-CG-5726-01 X 119211093 119211093 G A RHOXF2B Silent p.G80G 0.19 TCGA-CG-5726-01 X 122551612 122551612 A C GRIA3 Silent p.G620G 0.08 TCGA-CG-5726-01 X 124097630 124097630 A - TENM1 5'UTR 0.50 TCGA-CG-5726-01 X 12728602 12728602 A G FRMPD4 Missense_Mutation p.R519G 0.73 deleterious(0.01) probably_damaging(0.999) TCGA-CG-5726-01 X 130222789 130222789 G - ARHGAP36 3'UTR 0.33 TCGA-CG-5726-01 X 135080679 135080679 C T SLC9A6 Silent p.Y214Y 0.24 TCGA-CG-5726-01 X 135314105 135314105 T C MAP7D3 Silent p.S337S 0.79 TCGA-CG-5726-01 X 140995606 140995606 G T MAGEC1 Missense_Mutation p.A806S 0.81 tolerated_low_confidence(0.51) benign(0.364) TCGA-CG-5726-01 X 153215718 153215718 C T HCFC1 Missense_Mutation p.A1994T 0.75 deleterious(0) probably_damaging(0.928) TCGA-CG-5726-01 X 15402024 15402024 G A FIGF Silent p.Y15Y 0.71 TCGA-CG-5726-01 X 1712814 1712814 G A AKAP17A Silent p.G153G 0.69 TCGA-CG-5726-01 X 1748728 1748728 G A ASMT Missense_Mutation p.R153Q 0.61 tolerated(0.08) benign(0.021) TCGA-CG-5726-01 X 17739629 17739629 T C NHS Silent p.N307N 0.06 TCGA-CG-5726-01 X 19013015 19013015 A T GPR64 Missense_Mutation p.N956K 0.81 deleterious(0) probably_damaging(0.995) TCGA-CG-5726-01 X 19983736 19983736 T C CXorf23 Missense_Mutation p.R234G 0.04 deleterious(0.03) possibly_damaging(0.519) TCGA-CG-5726-01 X 209708 209708 C T PLCXD1 Missense_Mutation p.P186S 0.57 deleterious(0.04) possibly_damaging(0.905) TCGA-CG-5726-01 X 30870901 30870901 G A TAB3 Silent p.I568I 0.20 TCGA-CG-5726-01 X 36117910 36117910 A - CHDC2 Frame_Shift_Del p.K257Nfs*6 0.20 TCGA-CG-5726-01 X 37312611 37312611 C - PRRG1 Frame_Shift_Del p.P134Hfs*19 0.80 TCGA-CG-5726-01 X 38132647 38132647 T - TM4SF2 Intron 0.16 TCGA-CG-5726-01 X 41469154 41469159 TACATC - CASK Splice_Site p.X385_splice 0.83 TCGA-CG-5726-01 X 44703614 44703614 C T DUSP21 Missense_Mutation p.S79L 0.85 deleterious(0.04) benign(0.167) TCGA-CG-5726-01 X 44879953 44879953 C T KDM6A Missense_Mutation p.T181I 0.20 deleterious(0.01) benign(0.365) TCGA-CG-5726-01 X 47104300 47104301 - A USP11 Frame_Shift_Ins p.T732Nfs*4 0.26 TCGA-CG-5726-01 X 48046187 48046187 T C SSX5 3'UTR 0.23 TCGA-CG-5726-01 X 49110450 49110450 G A FOXP3 Missense_Mutation p.R299W 0.31 deleterious(0.01) benign(0.339) TCGA-CG-5726-01 X 64959042 64959042 C A MSN Missense_Mutation p.Q519K 0.78 tolerated(0.24) benign(0.03) TCGA-CG-5726-01 X 69478799 69478799 G A P2RY4 Missense_Mutation p.R226C 0.44 deleterious(0.03) benign(0.083) TCGA-CG-5726-01 X 70340970 70340970 T C MED12 Missense_Mutation p.Y235H 0.70 possibly_damaging(0.757) TCGA-CG-5726-01 X 75004754 75004754 G - MAGEE2 Frame_Shift_Del p.Q45Sfs*27 0.52 TCGA-CG-5726-01 X 77387116 77387118 ATC - TAF9B In_Frame_Del p.D249del 0.84 TCGA-CG-5726-01 X 78010355 78010355 A - LPAR4 5'UTR 0.62 TCGA-CG-5726-01 X 78426931 78426931 C A GPR174 Missense_Mutation p.L143M 0.76 tolerated(0.07) benign(0.078) TCGA-CG-5727-01 10 18250745 18250745 A G SLC39A12 Missense_Mutation p.D166G 0.37 deleterious(0.02) probably_damaging(0.952) TCGA-CG-5727-01 10 31812911 31812911 G C ZEB1 Missense_Mutation p.Q885H 0.05 deleterious(0.01) probably_damaging(0.995) TCGA-CG-5727-01 10 53893600 53893600 G T PRKG1 Silent p.G312G 0.38 TCGA-CG-5727-01 10 55663110 55663110 T C PCDH15 Missense_Mutation p.I1132V 0.14 tolerated(0.17) possibly_damaging(0.776) TCGA-CG-5727-01 10 60556153 60556153 G T BICC1 Missense_Mutation p.R411S 0.13 deleterious(0) probably_damaging(0.997) TCGA-CG-5727-01 10 69700775 69700775 G A HERC4 Missense_Mutation p.P817S 0.12 deleterious(0) probably_damaging(1) TCGA-CG-5727-01 11 109294891 109294891 G A C11orf87 Missense_Mutation p.A178T 0.34 tolerated_low_confidence(0.29) benign(0.004) TCGA-CG-5727-01 11 113650534 113650534 G A CLDN25 Missense_Mutation p.R6H 0.16 tolerated(0.21) benign(0.014) TCGA-CG-5727-01 11 17450207 17450207 G A ABCC8 Silent p.L610L 0.35 TCGA-CG-5727-01 11 17482049 17482049 C T ABCC8 Missense_Mutation p.V333I 0.16 tolerated(0.35) benign(0.005) TCGA-CG-5727-01 11 20180794 20180794 C T DBX1 Missense_Mutation p.A138T 0.16 tolerated(0.32) benign(0.047) TCGA-CG-5727-01 11 26538454 26538454 G A ANO3 Silent p.L224L 0.44 TCGA-CG-5727-01 11 47681771 47681771 G A AGBL2 Missense_Mutation p.A888V 0.20 tolerated_low_confidence(0.09) benign(0.004) TCGA-CG-5727-01 11 48177607 48177607 G A PTPRJ Missense_Mutation p.R1125H 0.05 deleterious(0.04) probably_damaging(0.999) TCGA-CG-5727-01 11 55322894 55322894 A T OR4C15 Nonstop_Mutation p.*371Lext*? 0.12 TCGA-CG-5727-01 11 55904988 55904988 G T OR8J3 Silent p.I69I 0.35 TCGA-CG-5727-01 11 56043418 56043418 A G OR5T1 Missense_Mutation p.K102E 0.38 deleterious(0.02) benign(0.167) TCGA-CG-5727-01 11 62575109 62575109 A C STX5 Intron 0.15 TCGA-CG-5727-01 11 66330604 66330604 G A CTSF 3'Flank 0.28 TCGA-CG-5727-01 11 83182758 83182758 C T DLG2 Missense_Mutation p.R786Q 0.19 deleterious(0.01) probably_damaging(0.995) TCGA-CG-5727-01 11 94231299 94231299 T C ANKRD49 Silent p.D107D 0.14 TCGA-CG-5727-01 12 101017746 101017746 C T GAS2L3 Missense_Mutation p.S388L 0.12 tolerated(0.38) benign(0.002) TCGA-CG-5727-01 12 110345342 110345342 C T TCHP Silent p.T179T 0.24 TCGA-CG-5727-01 12 11060990 11060990 C T TAS2R13 Missense_Mutation p.R303Q 0.15 tolerated(0.29) benign(0) TCGA-CG-5727-01 12 111158052 111158052 A G PPP1CC Intron 0.25 TCGA-CG-5727-01 12 132464291 132464291 C T EP400 Missense_Mutation p.T463M 0.32 unknown(0) TCGA-CG-5727-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.30 deleterious(0) benign(0.361) TCGA-CG-5727-01 12 32458680 32458680 C A BICD1 Missense_Mutation p.T210K 0.20 tolerated(0.11) possibly_damaging(0.5) TCGA-CG-5727-01 12 52775182 52775182 C T KRT84 Missense_Mutation p.R347H 0.35 deleterious(0.03) benign(0.155) TCGA-CG-5727-01 12 53042031 53042031 C T KRT2 Missense_Mutation p.A350T 0.30 tolerated(0.07) benign(0.28) TCGA-CG-5727-01 12 53900562 53900562 A T NPFF Nonstop_Mutation p.*114Rext*5 0.29 TCGA-CG-5727-01 12 54790125 54790125 G A ITGA5 Silent p.T1034T 0.34 TCGA-CG-5727-01 12 58111650 58111650 C - OS9 Intron 0.26 TCGA-CG-5727-01 12 6103071 6103071 C A VWF Silent p.R2185R 0.27 TCGA-CG-5727-01 12 78594292 78594292 G A NAV3 Missense_Mutation p.G2230D 0.15 tolerated(0.22) probably_damaging(1) TCGA-CG-5727-01 12 8077053 8077053 C A SLC2A3 Missense_Mutation p.G341W 0.15 deleterious(0) probably_damaging(1) TCGA-CG-5727-01 13 31724249 31724249 G C HSPH1 Missense_Mutation p.Q327E 0.02 tolerated(0.21) probably_damaging(0.994) TCGA-CG-5727-01 13 78492731 78492731 G A EDNRB Missense_Mutation p.T83M 0.21 deleterious_low_confidence(0) possibly_damaging(0.649) TCGA-CG-5727-01 13 86369237 86369237 G T SLITRK6 Missense_Mutation p.N469K 0.36 deleterious(0) probably_damaging(1) TCGA-CG-5727-01 13 88328906 88328906 C T SLITRK5 Silent p.I421I 0.14 TCGA-CG-5727-01 14 101531868 101531868 G A MIR412 RNA 0.21 TCGA-CG-5727-01 14 102918810 102918810 G A TECPR2 Silent p.T1162T 0.41 TCGA-CG-5727-01 14 105415602 105415602 G A AHNAK2 Silent p.P2062P 0.44 TCGA-CG-5727-01 14 78374153 78374153 G A ADCK1 Missense_Mutation p.R250Q 0.20 tolerated(0.21) benign(0.003) TCGA-CG-5727-01 14 95088714 95088714 C T SERPINA3 Silent p.I318I 0.30 TCGA-CG-5727-01 15 101717818 101717818 G T CHSY1 Silent p.V728V 0.33 TCGA-CG-5727-01 15 23931569 23931569 C G NDN Missense_Mutation p.A266P 0.06 deleterious(0) probably_damaging(1) TCGA-CG-5727-01 15 69339812 69339812 C T NOX5 Silent p.A584A 0.38 TCGA-CG-5727-01 15 81440853 81440853 C A C15orf26 Silent p.A295A 0.29 TCGA-CG-5727-01 15 81627266 81627266 C T TMC3 Missense_Mutation p.D752N 0.05 tolerated(0.08) benign(0.077) TCGA-CG-5727-01 15 92988117 92988117 G A ST8SIA2 Missense_Mutation p.R267H 0.37 benign(0.052) TCGA-CG-5727-01 16 2329025 2329025 C T ABCA3 Missense_Mutation p.R1489H 0.42 tolerated(0.25) benign(0.003) TCGA-CG-5727-01 16 4431585 4431585 G A VASN Missense_Mutation p.R236Q 0.36 tolerated(0.31) benign(0.043) TCGA-CG-5727-01 16 55883653 55883653 G A CES5A Missense_Mutation p.R465W 0.17 deleterious(0.01) benign(0.007) TCGA-CG-5727-01 16 69404367 69404367 G A TERF2 Intron 0.15 TCGA-CG-5727-01 16 69404369 69404369 G A TERF2 Intron 0.15 TCGA-CG-5727-01 16 70708398 70708398 G A MTSS1L Silent p.G288G 0.09 TCGA-CG-5727-01 16 89623299 89623299 C T SPG7 Missense_Mutation p.A729V 0.06 deleterious(0) possibly_damaging(0.794) TCGA-CG-5727-01 17 1478995 1478995 T C SLC43A2 Missense_Mutation p.Y538C 0.27 deleterious(0.01) possibly_damaging(0.885) TCGA-CG-5727-01 17 36971114 36971114 C T CWC25 Missense_Mutation p.R143K 0.23 tolerated(0.35) benign(0.429) TCGA-CG-5727-01 17 39975631 39975631 C T FKBP10 Silent p.D299D 0.22 TCGA-CG-5727-01 17 40820258 40820258 T A PLEKHH3 Missense_Mutation p.S757C 0.19 deleterious(0) possibly_damaging(0.89) TCGA-CG-5727-01 17 56598621 56598621 C T SEPT4 Missense_Mutation p.V385M 0.15 deleterious(0.01) possibly_damaging(0.85) TCGA-CG-5727-01 17 59093117 59093117 C G BCAS3 Missense_Mutation p.L498V 0.19 tolerated(0.42) benign(0.071) TCGA-CG-5727-01 17 61949672 61949672 G A CSH2 Silent p.D156D 0.19 TCGA-CG-5727-01 17 70118940 70118941 - T SOX9 Frame_Shift_Ins p.Y172Lfs*80 0.15 TCGA-CG-5727-01 17 72350375 72350375 A C KIF19 Missense_Mutation p.T795P 0.29 tolerated(0.34) benign(0.001) TCGA-CG-5727-01 17 7577130 7577130 A G TP53 Missense_Mutation p.F270L 0.43 deleterious(0) probably_damaging(0.973) TCGA-CG-5727-01 18 23615079 23615079 T G SS18 Missense_Mutation p.Y329S 0.15 tolerated_low_confidence(0.09) unknown(0) TCGA-CG-5727-01 18 55268941 55268941 C A NARS Missense_Mutation p.R530S 0.18 deleterious(0.01) benign(0.439) TCGA-CG-5727-01 19 1235849 1235849 G T C19orf26 Silent p.G58G 0.37 TCGA-CG-5727-01 19 15905399 15905399 G A OR10H5 Missense_Mutation p.V181M 0.16 tolerated(0.53) benign(0.269) TCGA-CG-5727-01 19 1612362 1612362 C T TCF3 Intron 0.17 TCGA-CG-5727-01 19 19414582 19414582 C T SUGP1 Missense_Mutation p.E205K 0.16 deleterious(0.01) probably_damaging(1) TCGA-CG-5727-01 19 31769042 31769042 C T TSHZ3 Missense_Mutation p.A553T 0.18 deleterious(0) probably_damaging(0.998) TCGA-CG-5727-01 19 32930708 32930708 A T DPY19L3 Silent p.I249I 0.07 TCGA-CG-5727-01 19 32930709 32930709 T A DPY19L3 Missense_Mutation p.S250T 0.07 tolerated(0.33) benign(0.129) TCGA-CG-5727-01 19 38573359 38573359 C T SIPA1L3 Missense_Mutation p.T385M 0.29 deleterious(0.01) possibly_damaging(0.556) TCGA-CG-5727-01 19 38976356 38976356 C T RYR1 Silent p.H1687H 0.28 TCGA-CG-5727-01 19 42753352 42753352 G A ERF Silent p.S304S 0.13 TCGA-CG-5727-01 19 43683290 43683290 G T PSG5 Intron 0.19 TCGA-CG-5727-01 19 43683291 43683291 G T PSG5 Intron 0.18 TCGA-CG-5727-01 19 52714526 52714526 C T PPP2R1A Missense_Mutation p.S95L 0.33 tolerated(0.1) benign(0.002) TCGA-CG-5727-01 19 53086371 53086371 A - ZNF701 Frame_Shift_Del p.Y420Tfs*21 0.12 TCGA-CG-5727-01 19 54080995 54080995 A G ZNF331 Missense_Mutation p.Y394C 0.21 tolerated(0.2) probably_damaging(0.999) TCGA-CG-5727-01 19 55316320 55316320 G A KIR2DL4 Missense_Mutation p.R50Q 0.45 tolerated(1) benign(0.01) TCGA-CG-5727-01 19 57133750 57133750 G C ZNF71 Missense_Mutation p.K365N 0.21 tolerated(0.05) possibly_damaging(0.495) TCGA-CG-5727-01 19 57705342 57705342 G A ZNF264 Missense_Mutation p.E45K 0.20 deleterious(0) possibly_damaging(0.718) TCGA-CG-5727-01 19 6680225 6680225 A T C3 Missense_Mutation p.F1467Y 0.18 tolerated(0.11) possibly_damaging(0.752) TCGA-CG-5727-01 19 6711199 6711199 C T C3 Silent p.T426T 0.19 TCGA-CG-5727-01 1 103387081 103387081 C T COL11A1 Missense_Mutation p.G1234E 0.16 unknown(0) TCGA-CG-5727-01 1 111660643 111660643 C G DRAM2 3'UTR 0.23 TCGA-CG-5727-01 1 120529603 120529603 C T NOTCH2 Missense_Mutation p.R285H 0.13 deleterious(0.05) benign(0.059) TCGA-CG-5727-01 1 1222237 1222237 G T SCNN1D Missense_Mutation p.G334V 0.31 tolerated(0.05) possibly_damaging(0.451) TCGA-CG-5727-01 1 149859253 149859253 G A HIST2H2AB Missense_Mutation p.R72W 0.12 deleterious_low_confidence(0) benign(0.409) TCGA-CG-5727-01 1 151337403 151337403 T C SELENBP1 Missense_Mutation p.R419G 0.07 deleterious(0.01) benign(0.219) TCGA-CG-5727-01 1 152275879 152275879 G A FLG Missense_Mutation p.S3828L 0.36 unknown(0) TCGA-CG-5727-01 1 154570392 154570392 C T ADAR Missense_Mutation p.V616I 0.38 tolerated(0.53) possibly_damaging(0.747) TCGA-CG-5727-01 1 159169578 159169578 C G CADM3 Missense_Mutation p.H364Q 0.04 deleterious(0.01) probably_damaging(0.993) TCGA-CG-5727-01 1 162740230 162740230 C G DDR2 Missense_Mutation p.R478G 0.20 tolerated(0.54) benign(0) TCGA-CG-5727-01 1 178427010 178427010 G A RASAL2 Silent p.V861V 0.39 TCGA-CG-5727-01 1 220971337 220971337 G T MARC1 Missense_Mutation p.G245V 0.04 deleterious(0) probably_damaging(0.998) TCGA-CG-5727-01 1 235345675 235345675 G A ARID4B Silent p.C853C 0.18 TCGA-CG-5727-01 1 46972811 46972811 G A DMBX1 Silent p.A43A 0.17 TCGA-CG-5727-01 1 49193689 49193689 C G BEND5 Missense_Mutation p.E379Q 0.13 deleterious(0.02) possibly_damaging(0.519) TCGA-CG-5727-01 1 91178119 91178119 G A BARHL2 Missense_Mutation p.S305L 0.28 deleterious(0) unknown(0) TCGA-CG-5727-01 1 91977205 91977205 T C CDC7 Silent p.H129H 0.22 TCGA-CG-5727-01 1 92941605 92941605 G A GFI1 Missense_Mutation p.T417M 0.49 deleterious(0) probably_damaging(0.943) TCGA-CG-5727-01 20 13098334 13098334 A C SPTLC3 Missense_Mutation p.S372R 0.15 deleterious(0.02) probably_damaging(1) TCGA-CG-5727-01 20 23807102 23807102 G A CST2 Missense_Mutation p.R66C 0.28 deleterious(0.04) possibly_damaging(0.594) TCGA-CG-5727-01 20 33122521 33122521 G A DYNLRB1 Missense_Mutation p.V57M 0.14 deleterious(0.04) possibly_damaging(0.629) TCGA-CG-5727-01 20 409672 409672 G C RBCK1 Missense_Mutation p.W462C 0.05 deleterious(0) probably_damaging(0.948) TCGA-CG-5727-01 20 41100955 41100955 G A PTPRT Silent p.P467P 0.20 TCGA-CG-5727-01 20 43836661 43836661 G A SEMG1 Silent p.A241A 0.09 TCGA-CG-5727-01 20 4771170 4771170 A G RASSF2 Missense_Mutation p.V155A 0.25 tolerated(0.85) benign(0) TCGA-CG-5727-01 20 50705101 50705101 G T ZFP64 Missense_Mutation p.T156N 0.03 deleterious(0) probably_damaging(0.998) TCGA-CG-5727-01 21 10941947 10941947 T C TPTE Silent p.P252P 0.06 TCGA-CG-5727-01 21 31768846 31768846 C T KRTAP13-1 Missense_Mutation p.R148C 0.17 tolerated(0.29) benign(0.013) TCGA-CG-5727-01 21 34924449 34924449 G A SON Missense_Mutation p.R971K 0.18 benign(0.067) TCGA-CG-5727-01 21 43413582 43413582 C A ZBTB21 Missense_Mutation p.W208L 0.10 tolerated(0.12) probably_damaging(0.92) TCGA-CG-5727-01 21 48081793 48081793 C T PRMT2 Nonsense_Mutation p.Q348* 0.36 TCGA-CG-5727-01 22 37209779 37209779 G T PVALB Missense_Mutation p.S72Y 0.19 deleterious(0.03) benign(0.129) TCGA-CG-5727-01 22 37331471 37331471 T C CSF2RB Missense_Mutation p.I465T 0.06 tolerated(0.55) benign(0.002) TCGA-CG-5727-01 2 113818509 113818509 T C IL36RN Missense_Mutation p.I37T 0.19 tolerated(0.57) benign(0.021) TCGA-CG-5727-01 2 145157076 145157076 G A ZEB2 Missense_Mutation p.R560C 0.12 deleterious(0.02) benign(0.018) TCGA-CG-5727-01 2 166187901 166187901 G C SCN2A Missense_Mutation p.L737F 0.38 deleterious(0) probably_damaging(1) TCGA-CG-5727-01 2 179581831 179581831 C G TTN Missense_Mutation p.G8544R 0.15 TCGA-CG-5727-01 2 196877523 196877523 G C DNAH7 Missense_Mutation p.T326S 0.17 tolerated(0.87) benign(0.004) TCGA-CG-5727-01 2 202626541 202626541 T C ALS2 Missense_Mutation p.D59G 0.35 tolerated(1) benign(0.001) TCGA-CG-5727-01 2 220168525 220168525 C G PTPRN Missense_Mutation p.Q103H 0.04 deleterious(0) probably_damaging(0.995) TCGA-CG-5727-01 2 70015260 70015260 C T ANXA4 Silent p.A28A 0.30 TCGA-CG-5727-01 2 71780317 71780317 C T DYSF Silent p.D661D 0.23 TCGA-CG-5727-01 2 71825803 71825803 C T DYSF Silent p.I1228I 0.33 TCGA-CG-5727-01 2 90260200 90260200 G C IGKV1D-8 Missense_Mutation p.Q101H 0.23 deleterious(0) probably_damaging(0.917) TCGA-CG-5727-01 2 99636757 99636757 C T TSGA10 Silent p.L601L 0.26 TCGA-CG-5727-01 3 108195277 108195277 G A MYH15 Silent p.N420N 0.26 TCGA-CG-5727-01 3 15270563 15270563 C T CAPN7 Missense_Mutation p.T312I 0.04 deleterious(0) probably_damaging(0.98) TCGA-CG-5727-01 3 166960346 166960346 T G ZBBX Silent p.T780T 0.22 TCGA-CG-5727-01 3 183368270 183368270 C A KLHL24 Missense_Mutation p.F42L 0.04 tolerated(0.85) benign(0.258) TCGA-CG-5727-01 3 186504980 186504980 T C EIF4A2 Missense_Mutation p.F279S 0.37 deleterious(0) probably_damaging(1) TCGA-CG-5727-01 3 41266113 41266113 C G CTNNB1 Missense_Mutation p.S37C 0.34 deleterious(0) probably_damaging(0.986) TCGA-CG-5727-01 3 45987961 45987961 C A CXCR6 5'UTR 0.16 TCGA-CG-5727-01 3 46718164 46718164 C T ALS2CL Missense_Mutation p.E666K 0.18 tolerated(0.33) benign(0.008) TCGA-CG-5727-01 3 47284533 47284533 C A KIF9 Intron 0.30 TCGA-CG-5727-01 3 47888357 47888357 T A DHX30 Missense_Mutation p.F599I 0.23 tolerated(0.2) possibly_damaging(0.735) TCGA-CG-5727-01 3 69988303 69988303 A G MITF Missense_Mutation p.N213D 0.07 tolerated(0.45) benign(0.333) TCGA-CG-5727-01 3 9746659 9746659 C T CPNE9 Nonsense_Mutation p.Q81* 0.15 TCGA-CG-5727-01 3 9788874 9788874 G C BRPF1 Silent p.L1168L 0.24 TCGA-CG-5727-01 4 126372210 126372210 C A FAT4 Missense_Mutation p.Q3347K 0.45 benign(0.309) TCGA-CG-5727-01 4 126411351 126411351 G A FAT4 Silent p.T4458T 0.30 TCGA-CG-5727-01 4 158060076 158060076 C A GLRB Missense_Mutation p.N242K 0.06 tolerated(0.29) benign(0.109) TCGA-CG-5727-01 4 164506905 164506905 C T MARCH1 Missense_Mutation p.R140Q 0.05 deleterious(0.02) benign(0.03) TCGA-CG-5727-01 4 39505505 39505505 A G UGDH Missense_Mutation p.I455T 0.21 deleterious(0) possibly_damaging(0.479) TCGA-CG-5727-01 4 40439969 40439969 C T RBM47 Silent p.T314T 0.36 TCGA-CG-5727-01 4 66509144 66509144 C A EPHA5 Silent p.V61V 0.20 TCGA-CG-5727-01 4 69433646 69433646 C T UGT2B17 Missense_Mutation p.G186E 0.28 deleterious(0) possibly_damaging(0.878) TCGA-CG-5727-01 4 76489343 76489343 G A C4orf26 Missense_Mutation p.R44H 0.23 tolerated_low_confidence(0.18) benign(0.001) TCGA-CG-5727-01 5 112868662 112868662 C T YTHDC2 Silent p.I254I 0.19 TCGA-CG-5727-01 5 133478792 133478792 G A TCF7 Splice_Site p.X342_splice 0.40 TCGA-CG-5727-01 5 140229470 140229470 G A PCDHA9 Missense_Mutation p.V464M 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.73) TCGA-CG-5727-01 5 140256833 140256833 G A PCDHA12 Silent p.A592A 0.15 TCGA-CG-5727-01 5 140595315 140595315 G A PCDHB13 Silent p.A540A 0.18 TCGA-CG-5727-01 5 141993608 141993608 G T FGF1 Missense_Mutation p.L29I 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-CG-5727-01 5 150891882 150891882 C T FAT2 Missense_Mutation p.V3917M 0.17 benign(0.013) TCGA-CG-5727-01 5 168175345 168175345 G A SLIT3 Silent p.R744R 0.22 TCGA-CG-5727-01 5 179763495 179763495 G A GFPT2 Silent p.L66L 0.33 TCGA-CG-5727-01 5 256491 256491 G A SDHA Missense_Mutation p.E651K 0.21 tolerated_low_confidence(0.13) benign(0.026) TCGA-CG-5727-01 5 75587088 75587088 G A SV2C Missense_Mutation p.E394K 0.05 tolerated(0.07) probably_damaging(0.974) TCGA-CG-5727-01 6 126249822 126249822 G A NCOA7 Missense_Mutation p.G912R 0.15 deleterious(0) probably_damaging(1) TCGA-CG-5727-01 6 138413398 138413398 G C PERP Missense_Mutation p.F121L 0.14 tolerated(0.48) benign(0.113) TCGA-CG-5727-01 6 158296134 158296134 G A SNX9 Missense_Mutation p.D76N 0.23 tolerated(0.2) probably_damaging(0.996) TCGA-CG-5727-01 6 160526045 160526045 C T IGF2R Nonsense_Mutation p.Q2469* 0.46 TCGA-CG-5727-01 6 24559301 24559301 G A KIAA0319 Missense_Mutation p.R892W 0.12 deleterious(0.03) benign(0.02) TCGA-CG-5727-01 6 56462620 56462620 T C DST Missense_Mutation p.N1415S 0.35 possibly_damaging(0.591) TCGA-CG-5727-01 6 56919487 56919487 A T KIAA1586 Silent p.V730V 0.50 TCGA-CG-5727-01 6 75796182 75796182 A G COL12A1 3'UTR 0.43 TCGA-CG-5727-01 6 75797371 75797371 G A COL12A1 Nonsense_Mutation p.R3035* 0.47 TCGA-CG-5727-01 6 80745071 80745071 C T TTK Missense_Mutation p.P621S 0.24 tolerated(0.07) benign(0.045) TCGA-CG-5727-01 6 84646074 84646074 G C CYB5R4 Missense_Mutation p.E363Q 0.17 tolerated(0.29) benign(0.024) TCGA-CG-5727-01 7 120387763 120387763 G T KCND2 Nonsense_Mutation p.E582* 0.32 TCGA-CG-5727-01 7 128846389 128846389 G A SMO Missense_Mutation p.G409S 0.62 tolerated(0.21) benign(0.364) TCGA-CG-5727-01 7 142659403 142659403 A C KEL 5'UTR 0.42 TCGA-CG-5727-01 7 147844745 147844745 G A CNTNAP2 Missense_Mutation p.R906H 0.50 tolerated(0.19) benign(0.139) TCGA-CG-5727-01 7 149191094 149191094 G A ZNF746 Missense_Mutation p.T131M 0.77 deleterious(0.03) benign(0.095) TCGA-CG-5727-01 7 21598554 21598554 T G DNAH11 Silent p.T210T 0.62 TCGA-CG-5727-01 7 62752433 62752433 C A ZNF733P RNA 0.35 TCGA-CG-5727-01 7 72734221 72734221 G T TRIM50 Silent p.I140I 0.15 TCGA-CG-5727-01 7 82544530 82544530 A G PCLO Missense_Mutation p.S4258P 0.10 unknown(0) TCGA-CG-5727-01 7 87074291 87074291 C A ABCB4 Missense_Mutation p.V336F 0.43 deleterious(0) probably_damaging(0.993) TCGA-CG-5727-01 7 87174159 87174159 G A ABCB1 Missense_Mutation p.L682F 0.59 tolerated(0.15) benign(0.002) TCGA-CG-5727-01 8 105509670 105509670 T G LRP12 Missense_Mutation p.Q370H 0.46 tolerated(0.21) probably_damaging(0.99) TCGA-CG-5727-01 8 107763372 107763372 G A OXR1 3'UTR 0.21 TCGA-CG-5727-01 8 113392635 113392635 T G CSMD3 Missense_Mutation p.N2028H 0.16 tolerated(1) benign(0.318) TCGA-CG-5727-01 8 134042166 134042166 C T TG Silent p.R2379R 0.47 TCGA-CG-5727-01 8 15601095 15601095 C T TUSC3 Missense_Mutation p.S304L 0.06 deleterious(0.02) possibly_damaging(0.657) TCGA-CG-5727-01 8 70512983 70512983 G A SULF1 Missense_Mutation p.E294K 0.39 deleterious(0.01) possibly_damaging(0.491) TCGA-CG-5727-01 9 113234518 113234518 G A SVEP1 Silent p.I895I 0.43 TCGA-CG-5727-01 9 132484623 132484623 G T PRRX2 Missense_Mutation p.V252L 0.20 deleterious_low_confidence(0.01) benign(0.039) TCGA-CG-5727-01 9 133963174 133963174 G A LAMC3 Missense_Mutation p.E1483K 0.27 tolerated(1) benign(0.002) TCGA-CG-5727-01 9 136220821 136220821 G A SURF1 Intron 0.15 TCGA-CG-5727-01 9 141016271 141016271 C T CACNA1B Silent p.F2280F 0.14 TCGA-CG-5727-01 9 26906075 26906075 C G PLAA Splice_Site p.X608_splice 0.21 TCGA-CG-5727-01 X 123505295 123505295 T C SH2D1A 3'UTR 0.88 TCGA-CG-5727-01 X 138864763 138864763 A G ATP11C Missense_Mutation p.V635A 0.19 tolerated(0.82) benign(0.202) TCGA-CG-5727-01 X 67940949 67940949 C A STARD8 Missense_Mutation p.L745I 0.08 tolerated(0.06) possibly_damaging(0.484) TCGA-CG-5727-01 X 69719090 69719090 C A DLG3 Silent p.I645I 0.37 TCGA-CG-5728-01 10 101486739 101486739 G T COX15 Missense_Mutation p.L190I 0.10 deleterious(0.01) probably_damaging(0.954) TCGA-CG-5728-01 10 101489383 101489383 G A COX15 Missense_Mutation p.R67W 0.21 deleterious(0) possibly_damaging(0.556) TCGA-CG-5728-01 10 102265160 102265160 T - SEC31B Frame_Shift_Del p.K379Nfs*40 0.19 TCGA-CG-5728-01 10 102748985 102748985 C - C10orf2 Frame_Shift_Del p.R341Vfs*6 0.17 TCGA-CG-5728-01 10 102987152 102987152 C T LBX1 Missense_Mutation p.A241T 0.27 tolerated_low_confidence(0.25) benign(0.054) TCGA-CG-5728-01 10 103827571 103827571 G T HPS6 3'UTR 0.06 TCGA-CG-5728-01 10 104160088 104160088 G T NFKB2 Silent p.L546L 0.13 TCGA-CG-5728-01 10 104678648 104678648 C G CNNM2 Silent p.G137G 0.30 TCGA-CG-5728-01 10 105215212 105215212 G A CALHM1 Missense_Mutation p.A283V 0.16 tolerated(0.28) benign(0.002) TCGA-CG-5728-01 10 105809853 105809853 G T COL17A1 Missense_Mutation p.L720I 0.23 probably_damaging(0.952) TCGA-CG-5728-01 10 106074030 106074030 G A ITPRIP 3'UTR 0.39 TCGA-CG-5728-01 10 108923852 108923852 G A SORCS1 Missense_Mutation p.R145W 0.35 deleterious(0) possibly_damaging(0.888) TCGA-CG-5728-01 10 111878421 111878421 C A ADD3 Missense_Mutation p.P215H 0.32 deleterious(0.01) probably_damaging(1) TCGA-CG-5728-01 10 112338430 112338430 G A SMC3 Missense_Mutation p.R132Q 0.20 tolerated(0.11) possibly_damaging(0.703) TCGA-CG-5728-01 10 118404543 118404543 A G PNLIPRP2 Splice_Site p.X448_splice 0.36 TCGA-CG-5728-01 10 118700118 118700118 G T KIAA1598 Missense_Mutation p.F239L 0.13 tolerated(1) benign(0.123) TCGA-CG-5728-01 10 118896101 118896101 C T VAX1 Missense_Mutation p.R104H 0.20 deleterious(0) unknown(0) TCGA-CG-5728-01 10 119805326 119805326 T - RAB11FIP2 Frame_Shift_Del p.T117Qfs*6 0.13 TCGA-CG-5728-01 10 120796733 120796733 G A EIF3A Missense_Mutation p.R1273C 0.06 deleterious_low_confidence(0) unknown(0) TCGA-CG-5728-01 10 121275031 121275031 A G RGS10 Missense_Mutation p.L130P 0.22 tolerated(0.15) probably_damaging(0.986) TCGA-CG-5728-01 10 121618608 121618608 T C MCMBP Missense_Mutation p.D77G 0.15 tolerated(0.07) possibly_damaging(0.516) TCGA-CG-5728-01 10 123843197 123843197 C T TACC2 Silent p.G394G 0.20 TCGA-CG-5728-01 10 124924459 124924485 TAATTCTTTTGATACAGAGAAGGGTCT AATTCTTTTGATACAGAGAAGGGTC BUB3 3'UTR 0.19 TCGA-CG-5728-01 10 126100644 126100644 T - OAT Frame_Shift_Del p.T33Qfs*28 0.30 TCGA-CG-5728-01 10 128150089 128150089 T C C10orf90 Missense_Mutation p.T534A 0.17 tolerated(0.46) benign(0.013) TCGA-CG-5728-01 10 129903773 129903773 T C MKI67 Missense_Mutation p.M2111V 0.06 tolerated(1) benign(0) TCGA-CG-5728-01 10 129904519 129904519 G A MKI67 Missense_Mutation p.P1862L 0.19 tolerated(0.2) possibly_damaging(0.766) TCGA-CG-5728-01 10 134230688 134230688 C - PWWP2B 3'UTR 0.33 TCGA-CG-5728-01 10 135347279 135347279 G A CYP2E1 Missense_Mutation p.R282H 0.19 deleterious(0.04) benign(0.001) TCGA-CG-5728-01 10 14867588 14867588 G A CDNF Missense_Mutation p.A92V 0.14 deleterious(0) possibly_damaging(0.592) TCGA-CG-5728-01 10 15256478 15256478 G A FAM171A1 Missense_Mutation p.A370V 0.26 tolerated(0.18) benign(0.375) TCGA-CG-5728-01 10 16547037 16547038 AG - PTER Frame_Shift_Del p.E240Afs*14 0.14 TCGA-CG-5728-01 10 21823702 21823702 C T MLLT10 Silent p.D43D 0.17 TCGA-CG-5728-01 10 24762792 24762792 C - KIAA1217 Frame_Shift_Del p.P496Lfs*26 0.13 TCGA-CG-5728-01 10 27324556 27324560 TTTCT - ANKRD26 Frame_Shift_Del p.K940Mfs*3 0.19 TCGA-CG-5728-01 10 27459056 27459056 A - MASTL Frame_Shift_Del p.K391Nfs*12 0.18 TCGA-CG-5728-01 10 29812506 29812506 C - SVIL Frame_Shift_Del p.D1013Mfs*11 0.20 TCGA-CG-5728-01 10 37508154 37508154 A G ANKRD30A Missense_Mutation p.I1116V 0.26 tolerated(0.07) benign(0.003) TCGA-CG-5728-01 10 43287077 43287077 T G BMS1 Silent p.G213G 0.08 TCGA-CG-5728-01 10 43326431 43326431 G A BMS1 Missense_Mutation p.E1246K 0.25 tolerated(0.69) benign(0.008) TCGA-CG-5728-01 10 44874043 44874043 G A CXCL12 Intron 0.06 TCGA-CG-5728-01 10 45956953 45956953 A T MARCH8 Intron 0.18 TCGA-CG-5728-01 10 47751190 47751190 C A ANXA8L2 Missense_Mutation p.P23T 0.10 deleterious(0.04) possibly_damaging(0.556) TCGA-CG-5728-01 10 48414360 48414360 C T GDF2 Missense_Mutation p.V170M 0.22 tolerated(0.59) benign(0.01) TCGA-CG-5728-01 10 50667115 50667115 C T ERCC6 Missense_Mutation p.G1410R 0.25 tolerated(0.42) benign(0.006) TCGA-CG-5728-01 10 50682250 50682250 G A ERCC6 Silent p.N807N 0.18 TCGA-CG-5728-01 10 50686478 50686478 A G ERCC6 Silent p.D736D 0.15 TCGA-CG-5728-01 10 50863468 50863468 C T CHAT Missense_Mutation p.R605C 0.17 tolerated(0.1) benign(0.013) TCGA-CG-5728-01 10 5144691 5144691 C - AKR1C3 Frame_Shift_Del p.P233Rfs*22 0.12 TCGA-CG-5728-01 10 54074806 54074806 C T DKK1 Missense_Mutation p.R123C 0.30 deleterious(0) probably_damaging(1) TCGA-CG-5728-01 10 5766449 5766449 G - FAM208B Frame_Shift_Del p.E103Kfs*3 0.11 TCGA-CG-5728-01 10 5931081 5931081 G T ANKRD16 Silent p.A79A 0.11 TCGA-CG-5728-01 10 61941099 61941099 G A ANK3 Silent p.D724D 0.07 TCGA-CG-5728-01 10 64575932 64575932 A - EGR2 5'UTR 0.15 TCGA-CG-5728-01 10 71020998 71020998 C T HKDC1 Missense_Mutation p.R774C 0.18 tolerated(0.16) benign(0.014) TCGA-CG-5728-01 10 73577214 73577214 C T PSAP Missense_Mutation p.R520H 0.12 tolerated(0.06) possibly_damaging(0.749) TCGA-CG-5728-01 10 74135630 74135630 A G MICU1 Missense_Mutation p.V394A 0.12 tolerated(1) benign(0.001) TCGA-CG-5728-01 10 75296060 75296060 A G USP54 Missense_Mutation p.Y371H 0.18 tolerated(0.19) possibly_damaging(0.878) TCGA-CG-5728-01 10 76074474 76074474 T G ADK Missense_Mutation p.S82A 0.25 tolerated(1) benign(0.055) TCGA-CG-5728-01 10 76158266 76158266 A - ADK Frame_Shift_Del p.K163Rfs*14 0.26 TCGA-CG-5728-01 10 7618870 7618870 G A ITIH5 Silent p.N508N 0.18 TCGA-CG-5728-01 10 76784854 76784854 C T KAT6B Nonsense_Mutation p.Q1171* 0.09 TCGA-CG-5728-01 10 76910646 76910646 C T SAMD8 Silent p.D120D 0.11 TCGA-CG-5728-01 10 81053206 81053206 G - ZMIZ1 Frame_Shift_Del p.G344Afs*3 0.21 TCGA-CG-5728-01 10 82280496 82280496 C T TSPAN14 3'UTR 0.06 TCGA-CG-5728-01 10 88811360 88811360 C T GLUD1 3'UTR 0.25 TCGA-CG-5728-01 10 890939 890939 T - LARP4B Frame_Shift_Del p.T163Hfs*47 0.19 TCGA-CG-5728-01 10 89118005 89118005 C T NUTM2D 5'UTR 0.10 TCGA-CG-5728-01 10 89717770 89717770 A - PTEN Frame_Shift_Del p.K267Rfs*9 0.17 TCGA-CG-5728-01 10 90699305 90699305 C T ACTA2 Missense_Mutation p.R256H 0.19 deleterious_low_confidence(0) probably_damaging(0.947) TCGA-CG-5728-01 10 91066258 91066258 G T IFIT2 Missense_Mutation p.S182I 0.12 tolerated(0.45) benign(0.04) TCGA-CG-5728-01 10 91478615 91478615 G A KIF20B Missense_Mutation p.A474T 0.20 deleterious(0.04) possibly_damaging(0.491) TCGA-CG-5728-01 10 92672639 92672639 C T ANKRD1 Missense_Mutation p.R315H 0.17 tolerated_low_confidence(0.58) benign(0.001) TCGA-CG-5728-01 10 93721 93721 T A TUBB8 Missense_Mutation p.N204I 0.05 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CG-5728-01 10 94452213 94452213 C T HHEX Silent p.I150I 0.13 TCGA-CG-5728-01 10 94837049 94837050 - G CYP26A1 Frame_Shift_Ins p.E496Gfs*11 0.26 TCGA-CG-5728-01 10 95111464 95111464 A G MYOF Silent p.N1207N 0.07 TCGA-CG-5728-01 10 95518094 95518094 G A LGI1 Missense_Mutation p.V65I 0.22 tolerated(0.19) benign(0.068) TCGA-CG-5728-01 10 97779109 97779109 A G CC2D2B Intron 0.22 TCGA-CG-5728-01 10 98362066 98362066 G - PIK3AP1 Frame_Shift_Del p.R778Gfs*33 0.15 TCGA-CG-5728-01 10 99079988 99079988 C T FRAT1 Missense_Mutation p.P260S 0.33 tolerated_low_confidence(0.06) benign(0.03) TCGA-CG-5728-01 10 99120328 99120330 CTC - RRP12 In_Frame_Del p.E1205del 0.20 TCGA-CG-5728-01 11 102962501 102962501 G - DCUN1D5 Intron 0.23 TCGA-CG-5728-01 11 102992131 102992131 G A DYNC2H1 Missense_Mutation p.R464Q 0.10 benign(0.01) TCGA-CG-5728-01 11 105880739 105880739 A - MSANTD4 Frame_Shift_Del p.F187Lfs*19 0.20 TCGA-CG-5728-01 11 107299981 107299981 T - CWF19L2 Frame_Shift_Del p.N326Ifs*19 0.15 TCGA-CG-5728-01 11 1075884 1075884 T C MUC2 Missense_Mutation p.Y104H 0.42 probably_damaging(1) TCGA-CG-5728-01 11 108160489 108160489 G A ATM Missense_Mutation p.R1466Q 0.22 tolerated(0.12) possibly_damaging(0.756) TCGA-CG-5728-01 11 1082685 1082685 T C MUC2 Missense_Mutation p.M645T 0.24 benign(0.194) TCGA-CG-5728-01 11 108351905 108351905 A G KDELC2 Splice_Site p.X366_splice 0.25 TCGA-CG-5728-01 11 113126681 113126681 C T NCAM1 Silent p.D686D 0.28 TCGA-CG-5728-01 11 113196305 113196305 C T TTC12 Missense_Mutation p.R128C 0.20 tolerated(0.19) benign(0.001) TCGA-CG-5728-01 11 117710514 117710514 A G FXYD6 3'UTR 0.14 TCGA-CG-5728-01 11 118375926 118375926 T C KMT2A Silent p.L3107L 0.17 TCGA-CG-5728-01 11 118379858 118379858 G A KMT2A Missense_Mutation p.A3615T 0.09 benign(0.001) TCGA-CG-5728-01 11 118405304 118405304 C T TMEM25 3'UTR 0.14 TCGA-CG-5728-01 11 118427698 118427698 A G IFT46 Silent p.D87D 0.24 TCGA-CG-5728-01 11 118780673 118780673 G A BCL9L 5'UTR 0.22 TCGA-CG-5728-01 11 119057184 119057184 C T PDZD3 Intron 0.24 TCGA-CG-5728-01 11 119216273 119216273 G - MFRP Frame_Shift_Del p.N167Tfs*25 0.14 TCGA-CG-5728-01 11 120298860 120298860 G A ARHGEF12 Silent p.P163P 0.22 TCGA-CG-5728-01 11 121037453 121037453 C A TECTA Silent p.I1850I 0.21 TCGA-CG-5728-01 11 121460806 121460806 G A SORL1 Missense_Mutation p.G1379D 0.18 deleterious(0) probably_damaging(0.984) TCGA-CG-5728-01 11 121475905 121475905 A - SORL1 Frame_Shift_Del p.M1581Cfs*34 0.19 TCGA-CG-5728-01 11 122659877 122659877 A G UBASH3B Missense_Mutation p.I281V 0.18 tolerated(0.26) benign(0.136) TCGA-CG-5728-01 11 122944466 122944466 G C CLMP Missense_Mutation p.P280A 0.19 deleterious(0) probably_damaging(0.998) TCGA-CG-5728-01 11 123597620 123597620 T C ZNF202 Silent p.G344G 0.06 TCGA-CG-5728-01 11 124135342 124135342 A G OR8G5 Missense_Mutation p.D207G 0.15 deleterious_low_confidence(0.03) benign(0.101) TCGA-CG-5728-01 11 124626554 124626554 G A ESAM Missense_Mutation p.R112W 0.09 tolerated(0.18) possibly_damaging(0.901) TCGA-CG-5728-01 11 124749423 124749423 C T ROBO3 Missense_Mutation p.R1250W 0.09 deleterious_low_confidence(0.02) probably_damaging(0.996) TCGA-CG-5728-01 11 125472242 125472242 T C STT3A Missense_Mutation p.F65S 0.16 deleterious(0.03) probably_damaging(0.948) TCGA-CG-5728-01 11 128851757 128851757 T - ARHGAP32 Frame_Shift_Del p.N520Ifs*2 0.21 TCGA-CG-5728-01 11 130275355 130275355 T C ADAMTS8 3'UTR 0.20 TCGA-CG-5728-01 11 130275418 130275418 T C ADAMTS8 3'UTR 0.20 TCGA-CG-5728-01 11 134120196 134120198 TGT - THYN1 In_Frame_Del p.T88del 0.23 TCGA-CG-5728-01 11 134238664 134238664 T C GLB1L2 Missense_Mutation p.V339A 0.26 deleterious(0.04) benign(0.236) TCGA-CG-5728-01 11 13750163 13750163 C T FAR1 Missense_Mutation p.R464W 0.19 tolerated(0.06) benign(0.273) TCGA-CG-5728-01 11 16340017 16340017 C A SOX6 Missense_Mutation p.E140D 0.18 tolerated(0.43) probably_damaging(0.995) TCGA-CG-5728-01 11 17414551 17414551 C T ABCC8 Missense_Mutation p.R1578H 0.07 deleterious(0.01) benign(0.003) TCGA-CG-5728-01 11 17418493 17418493 G A ABCC8 Silent p.H1363H 0.08 TCGA-CG-5728-01 11 17452333 17452333 A G ABCC8 Intron 0.18 TCGA-CG-5728-01 11 18531139 18531139 C T TSG101 Missense_Mutation p.R144H 0.19 deleterious(0) possibly_damaging(0.777) TCGA-CG-5728-01 11 20078096 20078096 G A NAV2 Missense_Mutation p.V1641M 0.25 tolerated(0.22) benign(0.043) TCGA-CG-5728-01 11 30928236 30928236 T - DCDC1 Frame_Shift_Del p.T1319Lfs*11 0.20 TCGA-CG-5728-01 11 32637520 32637520 T - CCDC73 Frame_Shift_Del p.E448Kfs*5 0.18 TCGA-CG-5728-01 11 32998173 32998173 C T QSER1 3'UTR 0.17 TCGA-CG-5728-01 11 33308272 33308272 G A HIPK3 Silent p.V104V 0.20 TCGA-CG-5728-01 11 36293368 36293368 C T COMMD9 3'Flank 0.16 TCGA-CG-5728-01 11 43364043 43364043 C T API5 Missense_Mutation p.R520W 0.22 deleterious_low_confidence(0) unknown(0) TCGA-CG-5728-01 11 43876365 43876365 C A HSD17B12 Missense_Mutation p.T262K 0.22 deleterious(0.02) probably_damaging(0.979) TCGA-CG-5728-01 11 43918795 43918795 G A ALKBH3 Intron 0.07 TCGA-CG-5728-01 11 44102795 44102795 G A ACCS Missense_Mutation p.V346M 0.25 tolerated(0.2) possibly_damaging(0.903) TCGA-CG-5728-01 11 45935754 45935754 A G PEX16 Missense_Mutation p.L232S 0.40 deleterious(0) probably_damaging(0.982) TCGA-CG-5728-01 11 47283337 47283337 G A NR1H3 Intron 0.24 TCGA-CG-5728-01 11 47746252 47746252 A C FNBP4 Missense_Mutation p.L696R 0.24 deleterious(0.01) possibly_damaging(0.716) TCGA-CG-5728-01 11 49190753 49190753 T C FOLH1 Missense_Mutation p.I456V 0.06 tolerated(0.68) benign(0.011) TCGA-CG-5728-01 11 498463 498463 G A RNH1 Missense_Mutation p.S317L 0.22 tolerated(0.11) benign(0.419) TCGA-CG-5728-01 11 5322905 5322905 G A OR51B4 Missense_Mutation p.A91V 0.09 deleterious(0.03) benign(0.004) TCGA-CG-5728-01 11 5528897 5528897 C T UBQLN3 Missense_Mutation p.R631H 0.21 tolerated(0.07) benign(0.003) TCGA-CG-5728-01 11 5529850 5529850 T C UBQLN3 Silent p.S313S 0.19 TCGA-CG-5728-01 11 55339686 55339686 T - OR4C16 Frame_Shift_Del p.L30Cfs*13 0.17 TCGA-CG-5728-01 11 55735845 55735845 C T OR10AG1 Missense_Mutation p.C32Y 0.20 deleterious(0) possibly_damaging(0.658) TCGA-CG-5728-01 11 55890069 55890069 A C OR8H3 Missense_Mutation p.Y74S 0.14 deleterious(0) probably_damaging(0.95) TCGA-CG-5728-01 11 55944465 55944465 G T OR5J2 Silent p.V124V 0.14 TCGA-CG-5728-01 11 57115716 57115716 C T P2RX3 Missense_Mutation p.T155M 0.17 deleterious(0.01) benign(0.276) TCGA-CG-5728-01 11 58035201 58035201 T C OR10W1 Missense_Mutation p.T44A 0.13 tolerated(0.9) benign(0) TCGA-CG-5728-01 11 60704345 60704345 G A TMEM132A Missense_Mutation p.R1014H 0.23 tolerated(0.14) possibly_damaging(0.907) TCGA-CG-5728-01 11 61131767 61131767 C A TMEM138 5'UTR 0.21 TCGA-CG-5728-01 11 61257273 61257273 A G PPP1R32 Missense_Mutation p.K355E 0.07 tolerated(0.13) probably_damaging(1) TCGA-CG-5728-01 11 61504660 61504660 G A DAGLA Missense_Mutation p.G460R 0.05 deleterious(0.01) probably_damaging(1) TCGA-CG-5728-01 11 61563431 61563431 A - FEN1 Frame_Shift_Del p.K201Sfs*9 0.24 TCGA-CG-5728-01 11 62287437 62287437 C T AHNAK Missense_Mutation p.V4818I 0.21 benign(0.014) TCGA-CG-5728-01 11 62381299 62381299 G T ROM1 Missense_Mutation p.W182C 0.14 deleterious(0) probably_damaging(0.999) TCGA-CG-5728-01 11 62434112 62434112 G - METTL12 Frame_Shift_Del p.V106Wfs*11 0.14 TCGA-CG-5728-01 11 62455710 62455710 C A LRRN4CL Missense_Mutation p.V91L 0.21 deleterious(0) probably_damaging(0.997) TCGA-CG-5728-01 11 62483058 62483058 G A HNRNPUL2 Nonsense_Mutation p.R693* 0.05 TCGA-CG-5728-01 11 6260711 6260711 T G CNGA4 Missense_Mutation p.C54G 0.05 tolerated(0.27) possibly_damaging(0.632) TCGA-CG-5728-01 11 62744711 62744711 G A SLC22A6 Silent p.L504L 0.23 TCGA-CG-5728-01 11 63666286 63666286 C T MARK2 Missense_Mutation p.A152V 0.21 deleterious(0) probably_damaging(0.999) TCGA-CG-5728-01 11 63669730 63669730 G A MARK2 Missense_Mutation p.A388T 0.27 tolerated(0.56) possibly_damaging(0.509) TCGA-CG-5728-01 11 63782731 63782731 G A MACROD1 Silent p.G180G 0.29 TCGA-CG-5728-01 11 64054328 64054328 C T GPR137 Missense_Mutation p.T169M 0.05 deleterious(0.01) probably_damaging(0.975) TCGA-CG-5728-01 11 640597 640597 C G DRD4 Missense_Mutation p.C418W 0.28 deleterious(0.01) probably_damaging(0.949) TCGA-CG-5728-01 11 6412983 6412983 C T SMPD1 Missense_Mutation p.R230C 0.22 deleterious(0) probably_damaging(1) TCGA-CG-5728-01 11 64604405 64604405 C A CDC42BPG Missense_Mutation p.R431M 0.17 deleterious(0.03) possibly_damaging(0.45) TCGA-CG-5728-01 11 64677365 64677365 G A ATG2A Missense_Mutation p.T632M 0.15 tolerated(0.15) benign(0.012) TCGA-CG-5728-01 11 64702507 64702509 TGT - GPHA2 In_Frame_Del p.N81del 0.30 TCGA-CG-5728-01 11 64825848 64825848 A G NAALADL1 Missense_Mutation p.M49T 0.17 deleterious(0) benign(0.066) TCGA-CG-5728-01 11 65123714 65123714 C - TIGD3 Frame_Shift_Del p.P147Lfs*18 0.26 TCGA-CG-5728-01 11 65272957 65272957 G C MALAT1 RNA 0.21 TCGA-CG-5728-01 11 65360486 65360486 G - KCNK7 Frame_Shift_Del p.P305Lfs*? 0.22 TCGA-CG-5728-01 11 66083272 66083272 G T CD248 Silent p.A409A 0.06 TCGA-CG-5728-01 11 66238785 66238785 C T PELI3 Silent p.H99H 0.20 TCGA-CG-5728-01 11 66373260 66373260 G T CCS Missense_Mutation p.E253D 0.14 tolerated(1) benign(0.037) TCGA-CG-5728-01 11 6646598 6646598 C T DCHS1 Missense_Mutation p.R2326H 0.26 deleterious(0.05) possibly_damaging(0.749) TCGA-CG-5728-01 11 6703278 6703279 AG - MRPL17 3'UTR 0.18 TCGA-CG-5728-01 11 67069033 67069033 C T ANKRD13D Missense_Mutation p.R475C 0.24 deleterious(0) probably_damaging(0.997) TCGA-CG-5728-01 11 67075730 67075730 C T SSH3 Missense_Mutation p.A324V 0.19 deleterious(0) probably_damaging(1) TCGA-CG-5728-01 11 67267200 67267200 T C PITPNM1 Missense_Mutation p.T389A 0.17 tolerated(0.52) benign(0) TCGA-CG-5728-01 11 67267649 67267649 G - PITPNM1 Frame_Shift_Del p.P295Qfs*74 0.28 TCGA-CG-5728-01 11 68133093 68133093 C - LRP5 Frame_Shift_Del p.P314Qfs*70 0.32 TCGA-CG-5728-01 11 68840103 68840103 T C TPCN2 Missense_Mutation p.V357A 0.16 deleterious(0.02) probably_damaging(0.997) TCGA-CG-5728-01 11 69488006 69488006 T C ORAOV1 Missense_Mutation p.H45R 0.25 deleterious(0.03) benign(0.012) TCGA-CG-5728-01 11 70333142 70333142 C T SHANK2 Missense_Mutation p.V1087I 0.18 deleterious(0.01) benign(0.002) TCGA-CG-5728-01 11 75282937 75282937 G A SERPINH1 Missense_Mutation p.A356T 0.13 tolerated(0.26) benign(0.393) TCGA-CG-5728-01 11 75298694 75298694 C A MAP6 Missense_Mutation p.G618C 0.22 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-CG-5728-01 11 77649864 77649864 C T INTS4 Missense_Mutation p.R333H 0.14 deleterious(0.03) benign(0.025) TCGA-CG-5728-01 11 78440583 78440583 G A TENM4 Missense_Mutation p.P1082S 0.08 tolerated(1) benign(0.001) TCGA-CG-5728-01 11 83172958 83172958 A T DLG2 Intron 0.31 TCGA-CG-5728-01 11 8457623 8457623 T - STK33 Frame_Shift_Del p.G338Efs*13 0.12 TCGA-CG-5728-01 11 8739392 8739392 G A ST5 Nonsense_Mutation p.R509* 0.11 TCGA-CG-5728-01 11 87883091 87883091 A G RAB38 Missense_Mutation p.Y79H 0.22 deleterious(0) probably_damaging(0.998) TCGA-CG-5728-01 11 88027300 88027300 G A CTSC Silent p.Y422Y 0.08 TCGA-CG-5728-01 11 89935552 89935552 A G CHORDC1 3'UTR 0.21 TCGA-CG-5728-01 11 9202415 9202415 T C DENND5A Missense_Mutation p.I452V 0.14 tolerated(0.63) benign(0) TCGA-CG-5728-01 11 92532253 92532253 A C FAT3 Missense_Mutation p.K2025T 0.15 possibly_damaging(0.698) TCGA-CG-5728-01 11 92577560 92577560 C T FAT3 Missense_Mutation p.A3676V 0.18 benign(0.003) TCGA-CG-5728-01 11 94180539 94180539 A G MRE11A Silent p.D543D 0.17 TCGA-CG-5728-01 12 100042354 100042354 A - FAM71C Frame_Shift_Del p.K136Nfs*5 0.28 TCGA-CG-5728-01 12 102590055 102590055 T - PARPBP Frame_Shift_Del p.F577Lfs*11 0.17 TCGA-CG-5728-01 12 102813396 102813396 C T IGF1 Missense_Mutation p.R98Q 0.27 tolerated(0.64) benign(0.277) TCGA-CG-5728-01 12 104476625 104476625 A - HCFC2 Frame_Shift_Del p.A339Hfs*2 0.20 TCGA-CG-5728-01 12 105540906 105540906 G A KIAA1033 Silent p.T832T 0.22 TCGA-CG-5728-01 12 108168949 108168954 ATTGAG - ASCL4 5'UTR 0.24 TCGA-CG-5728-01 12 108169016 108169016 G A ASCL4 Silent p.A8A 0.08 TCGA-CG-5728-01 12 109017999 109017999 C T SELPLG Missense_Mutation p.E45K 0.16 tolerated(1) unknown(0) TCGA-CG-5728-01 12 109972426 109972426 C T UBE3B Missense_Mutation p.R1016W 0.32 deleterious(0) probably_damaging(0.988) TCGA-CG-5728-01 12 110457005 110457005 C T ANKRD13A Silent p.F202F 0.19 TCGA-CG-5728-01 12 111954043 111954043 C T ATXN2 Silent p.S590S 0.30 TCGA-CG-5728-01 12 112513482 112513482 T - NAA25 Frame_Shift_Del p.N259Tfs*9 0.19 TCGA-CG-5728-01 12 11286356 11286356 G C TAS2R30 Missense_Mutation p.T163S 0.18 deleterious(0.02) possibly_damaging(0.591) TCGA-CG-5728-01 12 113830675 113830675 G A SDS 3'UTR 0.15 TCGA-CG-5728-01 12 114841733 114841733 G T TBX5 5'UTR 0.27 TCGA-CG-5728-01 12 117013731 117013731 G A MAP1LC3B2 5'UTR 0.24 TCGA-CG-5728-01 12 117768908 117768908 C T NOS1 5'Flank 0.15 TCGA-CG-5728-01 12 120575372 120575373 CC - GCN1L1 Nonsense_Mutation p.W2213* 0.08 TCGA-CG-5728-01 12 120884195 120884195 G A TRIAP1 5'UTR 0.24 TCGA-CG-5728-01 12 121775094 121775094 C T ANAPC5 Silent p.A253A 0.19 TCGA-CG-5728-01 12 122016853 122016853 T C KDM2B Splice_Site p.X43_splice 0.09 TCGA-CG-5728-01 12 12273985 12273985 C - LRP6 3'UTR 0.47 TCGA-CG-5728-01 12 122975046 122975046 T - ZCCHC8 Frame_Shift_Del p.N129Mfs*19 0.11 TCGA-CG-5728-01 12 122992836 122992836 C T RSRC2 Missense_Mutation p.A322T 0.20 deleterious(0.04) unknown(0) TCGA-CG-5728-01 12 123110787 123110787 T - KNTC1 3'UTR 0.20 TCGA-CG-5728-01 12 123213725 123213725 A G HCAR1 3'UTR 0.46 TCGA-CG-5728-01 12 12629784 12629784 T G DUSP16 Missense_Mutation p.I661L 0.24 tolerated(0.06) benign(0.021) TCGA-CG-5728-01 12 132632321 132632321 C - NOC4L Frame_Shift_Del p.E201Rfs*17 0.31 TCGA-CG-5728-01 12 133197083 133197083 G A P2RX2 Missense_Mutation p.E230K 0.15 tolerated(0.36) benign(0.064) TCGA-CG-5728-01 12 133256104 133256104 G A POLE Missense_Mutation p.A186V 0.05 tolerated(0.51) benign(0.003) TCGA-CG-5728-01 12 133319798 133319798 G A ANKLE2 Missense_Mutation p.S432L 0.18 tolerated(0.73) benign(0.14) TCGA-CG-5728-01 12 133374948 133374948 G A GOLGA3 Missense_Mutation p.A639V 0.20 deleterious(0) probably_damaging(0.999) TCGA-CG-5728-01 12 14706188 14706188 T G PLBD1 Missense_Mutation p.T92P 0.06 tolerated(0.44) benign(0.004) TCGA-CG-5728-01 12 14781623 14781623 G A GUCY2C Missense_Mutation p.P736S 0.22 deleterious(0) probably_damaging(0.962) TCGA-CG-5728-01 12 14794028 14794028 G A GUCY2C Missense_Mutation p.R686W 0.21 tolerated(0.23) benign(0.024) TCGA-CG-5728-01 12 14993971 14993971 T - ART4 Frame_Shift_Del p.I87Mfs*16 0.17 TCGA-CG-5728-01 12 15067565 15067565 T C ERP27 3'UTR 0.27 TCGA-CG-5728-01 12 1748923 1748923 C T WNT5B Silent p.R134R 0.22 TCGA-CG-5728-01 12 1983828 1983828 A G CACNA2D4 Missense_Mutation p.M607T 0.14 deleterious(0) probably_damaging(0.973) TCGA-CG-5728-01 12 20522723 20522723 G - PDE3A Frame_Shift_Del p.E171Kfs*36 0.26 TCGA-CG-5728-01 12 20833254 20833255 CT - PDE3A 3'UTR 0.22 TCGA-CG-5728-01 12 22624384 22624384 G T C2CD5 Nonsense_Mutation p.C769* 0.11 TCGA-CG-5728-01 12 26572039 26572039 C T ITPR2 Silent p.A2351A 0.19 TCGA-CG-5728-01 12 27950767 27950767 G A KLHL42 Missense_Mutation p.V396M 0.22 tolerated(0.18) probably_damaging(0.999) TCGA-CG-5728-01 12 28122392 28122392 C T PTHLH Silent p.A12A 0.55 TCGA-CG-5728-01 12 30784848 30784848 C T IPO8 Silent p.E999E 0.29 TCGA-CG-5728-01 12 33529700 33529700 T - SYT10 3'UTR 0.18 TCGA-CG-5728-01 12 38714491 38714491 T - ALG10B Frame_Shift_Del p.S302Lfs*17 0.17 TCGA-CG-5728-01 12 40717061 40717061 T C LRRK2 Missense_Mutation p.L1870S 0.18 deleterious(0) probably_damaging(0.965) TCGA-CG-5728-01 12 42840484 42840485 - A PPHLN1 3'UTR 0.21 TCGA-CG-5728-01 12 45269072 45269072 C T NELL2 Silent p.E90E 0.20 TCGA-CG-5728-01 12 48477525 48477525 G A SENP1 Missense_Mutation p.A134V 0.17 tolerated(1) benign(0) TCGA-CG-5728-01 12 49391215 49391215 C - DDN Frame_Shift_Del p.V482* 0.15 TCGA-CG-5728-01 12 49445038 49445038 T C KMT2D Missense_Mutation p.T810A 0.14 unknown(0) TCGA-CG-5728-01 12 49948198 49948198 C T KCNH3 Missense_Mutation p.T666M 0.18 deleterious(0) probably_damaging(0.999) TCGA-CG-5728-01 12 50191010 50191010 G - NCKAP5L Frame_Shift_Del p.W212Gfs*35 0.21 TCGA-CG-5728-01 12 5021148 5021148 G A KCNA1 Missense_Mutation p.V202I 0.29 tolerated(0.52) benign(0) TCGA-CG-5728-01 12 50232905 50232905 G T BCDIN3D Intron 0.16 TCGA-CG-5728-01 12 50369275 50369275 G A AQP6 Missense_Mutation p.A224T 0.21 deleterious(0) probably_damaging(0.986) TCGA-CG-5728-01 12 51054033 51054033 G A DIP2B Missense_Mutation p.A120T 0.23 deleterious(0.03) benign(0.12) TCGA-CG-5728-01 12 53009982 53009982 G A KRT73 Silent p.S210S 0.08 TCGA-CG-5728-01 12 53189265 53189265 C T KRT3 Missense_Mutation p.D188N 0.16 deleterious(0) probably_damaging(0.999) TCGA-CG-5728-01 12 53448186 53448186 G A TENC1 Silent p.L171L 0.15 TCGA-CG-5728-01 12 53586138 53586138 C T ITGB7 Missense_Mutation p.V711M 0.15 tolerated(0.25) benign(0.003) TCGA-CG-5728-01 12 53679949 53679949 A G ESPL1 Silent p.S1143S 0.15 TCGA-CG-5728-01 12 53818998 53818998 C G AMHR2 Silent p.L158L 0.16 TCGA-CG-5728-01 12 53877706 53877708 CCT - MAP3K12 In_Frame_Del p.R449del 0.20 TCGA-CG-5728-01 12 54338951 54338951 C T HOXC13 Missense_Mutation p.R302C 0.17 deleterious(0) probably_damaging(0.998) TCGA-CG-5728-01 12 54379398 54379398 C T HOXC10 Missense_Mutation p.R119W 0.16 deleterious(0.02) possibly_damaging(0.841) TCGA-CG-5728-01 12 54427288 54427288 C T HOXC5 Missense_Mutation p.P128S 0.62 tolerated(0.19) benign(0.021) TCGA-CG-5728-01 12 54428259 54428259 A G HOXC5 Missense_Mutation p.S218G 0.25 deleterious(0.01) benign(0.094) TCGA-CG-5728-01 12 54576034 54576034 C T SMUG1 Missense_Mutation p.R220Q 0.25 deleterious(0.02) probably_damaging(0.947) TCGA-CG-5728-01 12 55524524 55524524 A - OR9K2 Frame_Shift_Del p.K326Nfs*3 0.24 TCGA-CG-5728-01 12 56566437 56566438 TC - SMARCC2 Frame_Shift_Del p.K568Tfs*32 0.17 TCGA-CG-5728-01 12 56629008 56629008 G A SLC39A5 Silent p.L234L 0.06 TCGA-CG-5728-01 12 56630979 56630979 T G SLC39A5 Missense_Mutation p.L445R 0.21 deleterious(0.01) probably_damaging(0.997) TCGA-CG-5728-01 12 56639302 56639302 G A ANKRD52 Missense_Mutation p.R755C 0.22 deleterious(0) probably_damaging(0.998) TCGA-CG-5728-01 12 56664223 56664223 T C COQ10A 3'UTR 0.18 TCGA-CG-5728-01 12 56755073 56755073 T C APOF Missense_Mutation p.Y306C 0.23 tolerated(0.14) benign(0.01) TCGA-CG-5728-01 12 56818849 56818851 CTT - TIMELESS In_Frame_Del p.E555del 0.09 TCGA-CG-5728-01 12 57111304 57111304 G A NACA Intron 0.11 TCGA-CG-5728-01 12 57111308 57111308 G C NACA Intron 0.07 TCGA-CG-5728-01 12 5721879 5721879 C T ANO2 Missense_Mutation p.S677N 0.16 deleterious(0.01) probably_damaging(0.997) TCGA-CG-5728-01 12 57567028 57567028 C T LRP1 Missense_Mutation p.R1081C 0.17 probably_damaging(0.932) TCGA-CG-5728-01 12 58000970 58000970 G - DTX3 Frame_Shift_Del p.G110Vfs*86 0.22 TCGA-CG-5728-01 12 6092336 6092336 C T VWF Missense_Mutation p.C2354Y 0.12 deleterious(0) possibly_damaging(0.831) TCGA-CG-5728-01 12 62104161 62104161 T G FAM19A2 3'UTR 0.17 TCGA-CG-5728-01 12 63976277 63976277 A G DPY19L2 Missense_Mutation p.V545A 0.11 tolerated(1) benign(0) TCGA-CG-5728-01 12 64061905 64061905 G A DPY19L2 Missense_Mutation p.A90V 0.20 tolerated_low_confidence(0.31) benign(0.003) TCGA-CG-5728-01 12 6437383 6437383 G A PLEKHG6 3'UTR 0.19 TCGA-CG-5728-01 12 65110520 65110520 G A GNS 3'UTR 0.12 TCGA-CG-5728-01 12 66990656 66990656 G A GRIP1 Missense_Mutation p.A36V 0.22 deleterious(0) benign(0.314) TCGA-CG-5728-01 12 6711546 6711546 T - CHD4 Frame_Shift_Del p.K73Rfs*129 0.19 TCGA-CG-5728-01 12 67706561 67706561 T C CAND1 Missense_Mutation p.I1215T 0.20 deleterious(0.03) benign(0.275) TCGA-CG-5728-01 12 6776787 6776787 T G ZNF384 3'UTR 0.10 TCGA-CG-5728-01 12 6806618 6806618 G A PIANP Missense_Mutation p.P120S 0.23 tolerated_low_confidence(0.74) possibly_damaging(0.803) TCGA-CG-5728-01 12 69753804 69753804 G A YEATS4 Splice_Site p.X17_splice 0.19 TCGA-CG-5728-01 12 7293944 7293944 G A CLSTN3 Missense_Mutation p.G477D 0.03 tolerated(0.11) possibly_damaging(0.788) TCGA-CG-5728-01 12 73050744 73050744 A G TRHDE Missense_Mutation p.S963G 0.20 tolerated(0.29) benign(0.008) TCGA-CG-5728-01 12 75764054 75764054 T G GLIPR1L1 3'UTR 0.18 TCGA-CG-5728-01 12 78569092 78569092 G A NAV3 Missense_Mutation p.R1663H 0.17 deleterious(0) probably_damaging(0.979) TCGA-CG-5728-01 12 83455558 83455558 T C TMTC2 Missense_Mutation p.L760P 0.06 tolerated(0.15) possibly_damaging(0.864) TCGA-CG-5728-01 12 89864258 89864258 T C POC1B Silent p.G230G 0.05 TCGA-CG-5728-01 12 93213103 93213103 T - EEA1 Frame_Shift_Del p.N570Tfs*8 0.20 TCGA-CG-5728-01 12 95443007 95443007 G A NR2C1 Missense_Mutation p.A323V 0.22 deleterious(0) probably_damaging(0.993) TCGA-CG-5728-01 12 95604038 95604038 G A FGD6 Missense_Mutation p.P341L 0.20 tolerated_low_confidence(0.15) benign(0.024) TCGA-CG-5728-01 12 96350720 96350720 C T AMDHD1 Silent p.C189C 0.17 TCGA-CG-5728-01 12 96361642 96361642 T - AMDHD1 3'UTR 0.10 TCGA-CG-5728-01 12 96641215 96641215 C T ELK3 Silent p.S235S 0.20 TCGA-CG-5728-01 13 100925452 100925452 T - PCCA Frame_Shift_Del p.L308Wfs*14 0.22 TCGA-CG-5728-01 13 101277913 101277913 G A TMTC4 Missense_Mutation p.A571V 0.09 deleterious(0.03) probably_damaging(0.948) TCGA-CG-5728-01 13 110838865 110838866 - G COL4A1 Frame_Shift_Ins p.G589Wfs*11 0.18 TCGA-CG-5728-01 13 111109772 111109772 G T COL4A2 Missense_Mutation p.K474N 0.10 probably_damaging(0.968) TCGA-CG-5728-01 13 113740563 113740563 C T MCF2L Silent p.D791D 0.07 TCGA-CG-5728-01 13 113803259 113803259 G A F10 Missense_Mutation p.G299S 0.23 tolerated(0.42) benign(0.006) TCGA-CG-5728-01 13 113833353 113833353 G A PCID2 Missense_Mutation p.A400V 0.23 tolerated(0.06) possibly_damaging(0.692) TCGA-CG-5728-01 13 113851338 113851338 T C PCID2 Silent p.S140S 0.20 TCGA-CG-5728-01 13 114542718 114542718 C - GAS6 Frame_Shift_Del p.G150Afs*49 0.26 TCGA-CG-5728-01 13 21264849 21264849 G A IFT88 Missense_Mutation p.G759S 0.20 tolerated(0.5) benign(0.206) TCGA-CG-5728-01 13 21995217 21995217 C T ZDHHC20 Missense_Mutation p.A78T 0.34 tolerated(0.19) benign(0.345) TCGA-CG-5728-01 13 25009229 25009229 G A PARP4 Silent p.F1350F 0.24 TCGA-CG-5728-01 13 26273359 26273359 C T ATP8A2 Silent p.L754L 0.17 TCGA-CG-5728-01 13 27255288 27255288 G A WASF3 Missense_Mutation p.V272M 0.22 tolerated(0.16) benign(0.172) TCGA-CG-5728-01 13 28908179 28908179 G A FLT1 Missense_Mutation p.A859V 0.18 deleterious(0) probably_damaging(1) TCGA-CG-5728-01 13 30088599 30088599 G - SLC7A1 3'UTR 0.18 TCGA-CG-5728-01 13 32705925 32705925 G A FRY Missense_Mutation p.R278Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-CG-5728-01 13 32914985 32914985 T C BRCA2 Silent p.L2165L 0.19 TCGA-CG-5728-01 13 33017684 33017685 - T N4BP2L2 Frame_Shift_Ins p.N330Kfs*5 0.13 TCGA-CG-5728-01 13 33700225 33700225 A G STARD13 Missense_Mutation p.L692P 0.05 deleterious(0) probably_damaging(0.996) TCGA-CG-5728-01 13 36396959 36396959 G A DCLK1 Silent p.D487D 0.17 TCGA-CG-5728-01 13 37599472 37599472 T C SUPT20H Silent p.P438P 0.15 TCGA-CG-5728-01 13 41894849 41894849 T C NAA16 Silent p.D97D 0.19 TCGA-CG-5728-01 13 42873557 42873557 T C AKAP11 Silent p.G225G 0.10 TCGA-CG-5728-01 13 43181067 43181067 G A TNFSF11 3'UTR 0.11 TCGA-CG-5728-01 13 43930086 43930086 G A ENOX1 Silent p.H264H 0.06 TCGA-CG-5728-01 13 46661878 46661878 A G CPB2 Splice_Site p.X50_splice 0.20 TCGA-CG-5728-01 13 51854975 51854975 G T FAM124A Silent p.G444G 0.14 TCGA-CG-5728-01 13 52960165 52960165 G A THSD1 Missense_Mutation p.A393V 0.26 tolerated(0.66) benign(0.007) TCGA-CG-5728-01 13 67801400 67801400 C A PCDH9 Missense_Mutation p.K391N 0.23 deleterious(0) possibly_damaging(0.891) TCGA-CG-5728-01 13 78176201 78176201 A G SCEL Missense_Mutation p.I307V 0.08 deleterious_low_confidence(0.02) benign(0.005) TCGA-CG-5728-01 13 78318470 78318470 G A SLAIN1 Silent p.E109E 0.07 TCGA-CG-5728-01 13 88329581 88329581 C T SLITRK5 Silent p.T646T 0.08 TCGA-CG-5728-01 13 92345891 92345891 C A GPC5 Missense_Mutation p.P259Q 0.16 deleterious(0) probably_damaging(0.993) TCGA-CG-5728-01 13 95714990 95714990 C T ABCC4 Missense_Mutation p.D1112N 0.05 deleterious(0.02) probably_damaging(0.938) TCGA-CG-5728-01 13 95735432 95735432 A - ABCC4 Frame_Shift_Del p.L883Wfs*7 0.22 TCGA-CG-5728-01 13 96529620 96529620 T C UGGT2 Splice_Site p.X1130_splice 0.18 TCGA-CG-5728-01 13 99087849 99087849 G T FARP1 Silent p.T721T 0.27 TCGA-CG-5728-01 13 99515326 99515326 C T DOCK9 Missense_Mutation p.V1176I 0.10 tolerated(0.73) probably_damaging(0.997) TCGA-CG-5728-01 14 100808882 100808882 G A WARS Silent p.D322D 0.20 TCGA-CG-5728-01 14 104165790 104165790 C T XRCC3 Missense_Mutation p.A229T 0.10 tolerated(0.39) benign(0.038) TCGA-CG-5728-01 14 105414613 105414613 G A AHNAK2 Missense_Mutation p.P2392L 0.20 benign(0.002) TCGA-CG-5728-01 14 105517868 105517868 G T GPR132 Silent p.A202A 0.32 TCGA-CG-5728-01 14 105716569 105716569 C T BTBD6 Nonsense_Mutation p.R340* 0.09 TCGA-CG-5728-01 14 106110840 106110840 C T IGHG2 Silent p.K96K 0.14 TCGA-CG-5728-01 14 106725223 106725223 G A IGHV3-23 Missense_Mutation p.T110M 0.10 tolerated_low_confidence(0.08) benign(0.387) TCGA-CG-5728-01 14 106829805 106829805 C G IGHV4-34 Missense_Mutation p.G53A 0.13 tolerated(0.47) benign(0.007) TCGA-CG-5728-01 14 19553784 19553784 A G POTEG Missense_Mutation p.Y123C 0.08 deleterious(0.02) possibly_damaging(0.848) TCGA-CG-5728-01 14 20779552 20779552 T - CCNB1IP1 3'UTR 0.40 TCGA-CG-5728-01 14 20813247 20813247 G A PARP2 Missense_Mutation p.G68D 0.15 tolerated_low_confidence(0.58) benign(0.005) TCGA-CG-5728-01 14 20928395 20928395 G T TMEM55B Silent p.I139I 0.16 TCGA-CG-5728-01 14 21498712 21498712 C T TPPP2 5'UTR 0.19 TCGA-CG-5728-01 14 21871355 21871355 T C CHD8 Missense_Mutation p.I1179V 0.19 deleterious(0) probably_damaging(0.97) TCGA-CG-5728-01 14 23532172 23532172 C - ACIN1 Frame_Shift_Del p.G1008Afs*18 0.16 TCGA-CG-5728-01 14 23549510 23549510 G A ACIN1 Missense_Mutation p.A403V 0.23 benign(0) TCGA-CG-5728-01 14 23567408 23567408 G A C14orf119 3'UTR 0.19 TCGA-CG-5728-01 14 23859423 23859423 G A MYH6 Missense_Mutation p.A1192V 0.22 deleterious(0.04) possibly_damaging(0.597) TCGA-CG-5728-01 14 23901953 23901953 C T MYH7 Missense_Mutation p.V133M 0.16 deleterious(0.01) probably_damaging(0.965) TCGA-CG-5728-01 14 24546935 24546935 C T CPNE6 Missense_Mutation p.P557L 0.18 deleterious(0) probably_damaging(0.913) TCGA-CG-5728-01 14 24613431 24613431 T C PSME2 Missense_Mutation p.K156R 0.15 deleterious(0.02) possibly_damaging(0.882) TCGA-CG-5728-01 14 24649726 24649726 G A IPO4 Silent p.T1056T 0.17 TCGA-CG-5728-01 14 29237480 29237480 C T FOXG1 Missense_Mutation p.S332L 0.18 deleterious(0.01) benign(0.097) TCGA-CG-5728-01 14 36003451 36003451 A G INSM2 5'UTR 0.11 TCGA-CG-5728-01 14 36005057 36005057 T - INSM2 Frame_Shift_Del p.F535Lfs*6 0.23 TCGA-CG-5728-01 14 36300660 36300660 G A BRMS1L Missense_Mutation p.D63N 0.05 tolerated(0.09) benign(0.38) TCGA-CG-5728-01 14 36780790 36780790 C T MBIP Missense_Mutation p.R260Q 0.11 deleterious(0.02) probably_damaging(0.999) TCGA-CG-5728-01 14 37132270 37132270 C T PAX9 Missense_Mutation p.A58V 0.15 deleterious(0) probably_damaging(0.996) TCGA-CG-5728-01 14 37180581 37180581 A - SLC25A21 Frame_Shift_Del p.F182Sfs*15 0.14 TCGA-CG-5728-01 14 39532546 39532546 A G SEC23A Silent p.Y460Y 0.32 TCGA-CG-5728-01 14 39565194 39565194 T C SEC23A Silent p.T43T 0.20 TCGA-CG-5728-01 14 45475281 45475281 A C FAM179B Silent p.R905R 0.16 TCGA-CG-5728-01 14 50649247 50649248 TG - SOS2 Frame_Shift_Del p.T264Sfs*2 0.13 TCGA-CG-5728-01 14 50863894 50863894 T C CDKL1 5'Flank 0.28 TCGA-CG-5728-01 14 52186842 52186842 G T FRMD6 Missense_Mutation p.R365L 0.25 tolerated(0.16) benign(0.23) TCGA-CG-5728-01 14 53250196 53250196 A - GNPNAT1 Frame_Shift_Del p.F54Lfs*7 0.23 TCGA-CG-5728-01 14 54418806 54418806 G T BMP4 Silent p.R45R 0.23 TCGA-CG-5728-01 14 57698340 57698340 G T EXOC5 Silent p.S344S 0.11 TCGA-CG-5728-01 14 60600981 60600981 T - PCNXL4 3'UTR 0.15 TCGA-CG-5728-01 14 61518564 61518564 T - SLC38A6 Frame_Shift_Del p.L372* 0.23 TCGA-CG-5728-01 14 64587756 64587757 - A SYNE2 Frame_Shift_Ins p.D4381Rfs*25 0.17 TCGA-CG-5728-01 14 64954534 64954534 T - ZBTB25 Frame_Shift_Del p.T139Qfs*75 0.16 TCGA-CG-5728-01 14 70235592 70235592 G A SRSF5 Missense_Mutation p.R92H 0.17 tolerated(0.06) benign(0.111) TCGA-CG-5728-01 14 70925078 70925078 T C ADAM21 Missense_Mutation p.S288P 0.06 tolerated(0.17) benign(0.012) TCGA-CG-5728-01 14 70925869 70925869 A - ADAM21 Frame_Shift_Del p.K552Nfs*17 0.14 TCGA-CG-5728-01 14 73029147 73029147 G A RGS6 Missense_Mutation p.R482H 0.14 deleterious(0.01) possibly_damaging(0.635) TCGA-CG-5728-01 14 73959137 73959137 G A HEATR4 Intron 0.17 TCGA-CG-5728-01 14 74196464 74196464 G - ELMSAN1 Frame_Shift_Del p.I659Sfs*45 0.14 TCGA-CG-5728-01 14 74205773 74205773 G - ELMSAN1 Frame_Shift_Del p.N314Tfs*4 0.27 TCGA-CG-5728-01 14 74424920 74424920 C A COQ6 Missense_Mutation p.D184E 0.03 tolerated(0.29) benign(0.008) TCGA-CG-5728-01 14 74969608 74969608 G A LTBP2 Missense_Mutation p.R1640C 0.15 deleterious(0) probably_damaging(0.999) TCGA-CG-5728-01 14 77257053 77257053 G A ANGEL1 Missense_Mutation p.R585C 0.19 deleterious(0.02) possibly_damaging(0.67) TCGA-CG-5728-01 14 78397874 78397874 G A ADCK1 Missense_Mutation p.R407H 0.29 deleterious(0.01) probably_damaging(0.923) TCGA-CG-5728-01 14 81366324 81366324 C T CEP128 Missense_Mutation p.R177H 0.19 deleterious(0.02) benign(0.394) TCGA-CG-5728-01 14 92480822 92480823 - T TRIP11 Frame_Shift_Ins p.M308Nfs*5 0.16 TCGA-CG-5728-01 14 92905714 92905714 C T SLC24A4 Silent p.C118C 0.07 TCGA-CG-5728-01 14 93125676 93125676 G A RIN3 Missense_Mutation p.V733M 0.23 deleterious(0) probably_damaging(0.997) TCGA-CG-5728-01 14 94158100 94158100 C T UNC79 Silent p.S2288S 0.19 TCGA-CG-5728-01 14 94776106 94776106 G A SERPINA6 Missense_Mutation p.T284M 0.22 deleterious(0.02) probably_damaging(0.978) TCGA-CG-5728-01 14 95921913 95921913 C T SYNE3 Missense_Mutation p.R313H 0.16 deleterious(0.01) possibly_damaging(0.817) TCGA-CG-5728-01 14 95923557 95923557 C T SYNE3 Missense_Mutation p.R249Q 0.09 tolerated(0.18) benign(0.002) TCGA-CG-5728-01 14 96986463 96986463 G A PAPOLA Missense_Mutation p.S27N 0.06 deleterious(0.02) probably_damaging(0.988) TCGA-CG-5728-01 14 99969288 99969288 G T CCNK Missense_Mutation p.Q326H 0.20 deleterious(0) unknown(0) TCGA-CG-5728-01 15 101845535 101845537 CAC - PCSK6 In_Frame_Del p.V945del 0.30 TCGA-CG-5728-01 15 23048857 23048857 A G NIPA1 Missense_Mutation p.M321T 0.25 deleterious(0.04) benign(0) TCGA-CG-5728-01 15 23048996 23048996 C T NIPA1 Missense_Mutation p.A275T 0.09 tolerated(0.3) probably_damaging(0.985) TCGA-CG-5728-01 15 23049218 23049218 A C NIPA1 Missense_Mutation p.F201V 0.10 deleterious(0) probably_damaging(0.91) TCGA-CG-5728-01 15 23932081 23932081 G A NDN Missense_Mutation p.P95L 0.23 deleterious(0.04) probably_damaging(0.998) TCGA-CG-5728-01 15 25456782 25456782 A G SNORD115-22 3'Flank 0.16 TCGA-CG-5728-01 15 25953381 25953381 G A ATP10A Missense_Mutation p.A804V 0.16 deleterious(0) probably_damaging(0.983) TCGA-CG-5728-01 15 27777969 27777969 T C GABRG3 Missense_Mutation p.F449S 0.06 deleterious(0) probably_damaging(0.999) TCGA-CG-5728-01 15 28090167 28090167 G A OCA2 Silent p.N790N 0.16 TCGA-CG-5728-01 15 28499646 28499647 - T HERC2 Frame_Shift_Ins p.E964Rfs*9 0.14 TCGA-CG-5728-01 15 29346438 29346438 C T APBA2 Silent p.N117N 0.23 TCGA-CG-5728-01 15 33192185 33192185 T - FMN1 Frame_Shift_Del p.S994Vfs*51 0.19 TCGA-CG-5728-01 15 33873743 33873743 G A RYR3 Missense_Mutation p.R491H 0.20 benign(0.158) TCGA-CG-5728-01 15 34455847 34455848 - T KATNBL1 Frame_Shift_Ins p.R11Tfs*5 0.21 TCGA-CG-5728-01 15 40308866 40308866 A G EIF2AK4 Missense_Mutation p.K1308R 0.22 tolerated(0.06) benign(0.38) TCGA-CG-5728-01 15 41029864 41029864 T C RMDN3 Missense_Mutation p.S396G 0.16 deleterious(0.03) benign(0.02) TCGA-CG-5728-01 15 41362706 41362706 T C INO80 Missense_Mutation p.K549E 0.14 deleterious(0) probably_damaging(0.998) TCGA-CG-5728-01 15 41794637 41794637 C T ITPKA Missense_Mutation p.T349M 0.11 deleterious(0) probably_damaging(0.96) TCGA-CG-5728-01 15 42459039 42459039 C T VPS39 Missense_Mutation p.V484M 0.19 deleterious(0.03) benign(0.3) TCGA-CG-5728-01 15 42743481 42743481 G T ZNF106 Missense_Mutation p.P307H 0.22 deleterious(0.02) benign(0.015) TCGA-CG-5728-01 15 43427812 43427812 A - TMEM62 Frame_Shift_Del p.T134Pfs*53 0.12 TCGA-CG-5728-01 15 43826846 43826846 A T PPIP5K1 3'UTR 0.10 TCGA-CG-5728-01 15 45003781 45003782 CT - B2M Frame_Shift_Del p.L15Ffs*41 0.16 TCGA-CG-5728-01 15 45007896 45007897 - G B2M Frame_Shift_Ins 0.19 TCGA-CG-5728-01 15 45388103 45388103 C T DUOX2 Missense_Mutation p.A1335T 0.17 deleterious(0) possibly_damaging(0.715) TCGA-CG-5728-01 15 45725301 45725301 C T C15orf48 3'UTR 0.20 TCGA-CG-5728-01 15 48752456 48752456 G C FBN1 Silent p.T1761T 0.19 TCGA-CG-5728-01 15 52903363 52903364 AC - FAM214A Frame_Shift_Del p.V165Ffs*17 0.15 TCGA-CG-5728-01 15 56134223 56134223 A T NEDD4 Missense_Mutation p.L930M 0.08 deleterious(0) probably_damaging(0.988) TCGA-CG-5728-01 15 62209578 62209578 G T VPS13C Silent p.R2673R 0.21 TCGA-CG-5728-01 15 63000709 63000709 C T TLN2 Silent p.S727S 0.18 TCGA-CG-5728-01 15 65553245 65553245 A G PARP16 Missense_Mutation p.Y271H 0.07 deleterious(0.03) possibly_damaging(0.632) TCGA-CG-5728-01 15 69561347 69561347 C T GLCE Missense_Mutation p.R540C 0.22 deleterious(0.01) probably_damaging(0.91) TCGA-CG-5728-01 15 71276445 71276445 T C LRRC49 Silent p.L345L 0.26 TCGA-CG-5728-01 15 72063445 72063445 C T THSD4 Missense_Mutation p.R938W 0.21 deleterious(0) probably_damaging(0.993) TCGA-CG-5728-01 15 72501132 72501132 C T PKM Silent p.S222S 0.25 TCGA-CG-5728-01 15 73541998 73541998 G T NEO1 Silent p.V610V 0.13 TCGA-CG-5728-01 15 74328323 74328323 C T PML Intron 0.19 TCGA-CG-5728-01 15 75042781 75042781 C - CYP1A2 Frame_Shift_Del p.L236Wfs*99 0.18 TCGA-CG-5728-01 15 75981164 75981164 G A CSPG4 Missense_Mutation p.P748S 0.05 tolerated(0.37) benign(0.005) TCGA-CG-5728-01 15 78401632 78401632 C T CIB2 Silent p.V97V 0.19 TCGA-CG-5728-01 15 78633393 78633393 G A CRABP1 Missense_Mutation p.A27T 0.25 tolerated(0.37) benign(0.002) TCGA-CG-5728-01 15 81234220 81234221 - GA KIAA1199 Frame_Shift_Ins p.K1150Rfs*8 0.19 TCGA-CG-5728-01 15 83346060 83346060 A T AP3B2 Missense_Mutation p.I485N 0.16 deleterious(0) possibly_damaging(0.688) TCGA-CG-5728-01 15 83430979 83430979 C A FSD2 Missense_Mutation p.W624C 0.14 deleterious(0) probably_damaging(1) TCGA-CG-5728-01 15 83805312 83805312 T - TM6SF1 Frame_Shift_Del p.L336* 0.09 TCGA-CG-5728-01 15 90904478 90904478 C T ZNF774 Missense_Mutation p.A472V 0.23 tolerated(0.07) possibly_damaging(0.883) TCGA-CG-5728-01 15 91832792 91832792 T - SV2B Frame_Shift_Del p.F585Lfs*8 0.13 TCGA-CG-5728-01 15 93528814 93528816 TGA - CHD2 In_Frame_Del p.D1111del 0.30 TCGA-CG-5728-01 15 99670499 99670499 G A SYNM Missense_Mutation p.S644N 0.16 tolerated(0.16) benign(0.117) TCGA-CG-5728-01 15 99671083 99671083 G - SYNM Frame_Shift_Del p.H841Tfs*47 0.23 TCGA-CG-5728-01 16 11000726 11000726 G - CIITA Frame_Shift_Del p.D461Mfs*28 0.25 TCGA-CG-5728-01 16 11017143 11017143 C T CIITA Missense_Mutation p.R1126W 0.19 deleterious(0) probably_damaging(1) TCGA-CG-5728-01 16 12162983 12162983 G A SNX29 Missense_Mutation p.R438Q 0.05 tolerated(0.92) benign(0.002) TCGA-CG-5728-01 16 1551487 1551487 G A TELO2 Missense_Mutation p.A450T 0.23 tolerated(0.56) benign(0.001) TCGA-CG-5728-01 16 1556320 1556320 C T TELO2 Missense_Mutation p.R706C 0.15 deleterious(0.05) benign(0.209) TCGA-CG-5728-01 16 16349625 16349625 G A NOMO3 Missense_Mutation p.G338R 0.19 tolerated(0.12) possibly_damaging(0.656) TCGA-CG-5728-01 16 1709952 1709952 G A CRAMP1L Silent p.T767T 0.07 TCGA-CG-5728-01 16 19867941 19867942 CT - IQCK 3'UTR 0.26 TCGA-CG-5728-01 16 2004000 2004000 C T RPL3L Silent p.A51A 0.23 TCGA-CG-5728-01 16 20084900 20084900 C T GPR139 Silent p.S13S 0.20 TCGA-CG-5728-01 16 2027994 2027994 G A TBL3 Missense_Mutation p.R665Q 0.12 tolerated(0.29) benign(0.023) TCGA-CG-5728-01 16 20386166 20386166 T A PDILT Missense_Mutation p.D220V 0.14 deleterious(0) probably_damaging(1) TCGA-CG-5728-01 16 20974905 20974905 C T DNAH3 Missense_Mutation p.G3434D 0.15 deleterious(0.03) benign(0.098) TCGA-CG-5728-01 16 23563615 23563615 G A EARS2 Silent p.H50H 0.13 TCGA-CG-5728-01 16 24581665 24581665 A C RBBP6 Missense_Mutation p.K1218N 0.20 deleterious_low_confidence(0) unknown(0) TCGA-CG-5728-01 16 27503681 27503681 G A GTF3C1 Silent p.C1043C 0.06 TCGA-CG-5728-01 16 28997465 28997465 C - LAT Frame_Shift_Del p.W96Gfs*14 0.20 TCGA-CG-5728-01 16 29814245 29814245 A G KIF22 Missense_Mutation p.D479G 0.28 tolerated(0.33) benign(0.242) TCGA-CG-5728-01 16 30018218 30018218 G A DOC2A Silent p.L256L 0.18 TCGA-CG-5728-01 16 3085468 3085468 C T CCDC64B Silent p.P10P 0.23 TCGA-CG-5728-01 16 30990750 30990750 G A SETD1A Missense_Mutation p.A1215T 0.25 unknown(0) TCGA-CG-5728-01 16 31073394 31073394 G A ZNF668 Silent p.C308C 0.19 TCGA-CG-5728-01 16 31151942 31151942 G - PRSS36 Frame_Shift_Del p.L680Wfs*6 0.28 TCGA-CG-5728-01 16 31485238 31485238 G A TGFB1I1 Missense_Mutation p.G89R 0.21 deleterious(0.01) probably_damaging(0.96) TCGA-CG-5728-01 16 31500366 31500366 G T SLC5A2 Missense_Mutation p.E482D 0.23 deleterious(0) probably_damaging(0.93) TCGA-CG-5728-01 16 3169295 3169295 G A ZNF205 Missense_Mutation p.V212M 0.27 tolerated(0.11) benign(0.013) TCGA-CG-5728-01 16 3493164 3493164 G T ZNF597 5'UTR 0.19 TCGA-CG-5728-01 16 3640549 3640549 C T SLX4 Silent p.P1030P 0.07 TCGA-CG-5728-01 16 3658536 3658536 G A SLX4 Missense_Mutation p.L144F 0.26 tolerated(0.07) possibly_damaging(0.548) TCGA-CG-5728-01 16 4562627 4562627 C T CDIP1 Silent p.T191T 0.18 TCGA-CG-5728-01 16 46705645 46705645 C T VPS35 Missense_Mutation p.R499H 0.22 tolerated(0.66) benign(0.001) TCGA-CG-5728-01 16 4723609 4723609 C T MGRN1 Silent p.C302C 0.26 TCGA-CG-5728-01 16 50347950 50347950 G A ADCY7 Missense_Mutation p.V945I 0.25 tolerated(0.33) benign(0.027) TCGA-CG-5728-01 16 50830467 50830467 T C CYLD 3'UTR 0.13 TCGA-CG-5728-01 16 5094401 5094401 G - C16orf89 3'UTR 0.20 TCGA-CG-5728-01 16 56485619 56485619 A G OGFOD1 Missense_Mutation p.E32G 0.06 tolerated(0.08) benign(0.008) TCGA-CG-5728-01 16 57059906 57059909 CTGC - NLRC5 Frame_Shift_Del p.P356Qfs*20 0.10 TCGA-CG-5728-01 16 57060239 57060240 GA - NLRC5 Frame_Shift_Del p.E462Gfs*92 0.22 TCGA-CG-5728-01 16 57509501 57509501 G A DOK4 Missense_Mutation p.T69M 0.25 deleterious(0.04) possibly_damaging(0.509) TCGA-CG-5728-01 16 57789830 57789830 G A KATNB1 Splice_Site p.X548_splice 0.10 TCGA-CG-5728-01 16 58318533 58318533 G A PRSS54 Silent p.C205C 0.22 TCGA-CG-5728-01 16 58537768 58537768 C T NDRG4 Missense_Mutation p.R82C 0.17 deleterious(0) probably_damaging(0.982) TCGA-CG-5728-01 16 66670346 66670346 G T CMTM4 Missense_Mutation p.L109M 0.21 deleterious(0.01) probably_damaging(0.988) TCGA-CG-5728-01 16 67183705 67183705 G A B3GNT9 Silent p.G228G 0.18 TCGA-CG-5728-01 16 67190446 67190448 CCA - TRADD In_Frame_Del p.V39del 0.28 TCGA-CG-5728-01 16 67235944 67235944 T C ELMO3 Missense_Mutation p.L425S 0.09 tolerated(0.07) benign(0.197) TCGA-CG-5728-01 16 67290816 67290816 G A SLC9A5 Missense_Mutation p.V379I 0.17 deleterious(0.01) probably_damaging(0.997) TCGA-CG-5728-01 16 67304676 67304676 C - SLC9A5 Frame_Shift_Del p.S754Pfs*48 0.22 TCGA-CG-5728-01 16 68373230 68373230 T A PRMT7 Missense_Mutation p.N170K 0.21 tolerated(0.2) benign(0.066) TCGA-CG-5728-01 16 69155070 69155070 C T CHTF8 Silent p.A9A 0.15 TCGA-CG-5728-01 16 69681374 69681374 C T NFAT5 Nonsense_Mutation p.R233* 0.20 TCGA-CG-5728-01 16 72141255 72141255 G A DHX38 Missense_Mutation p.A873T 0.17 deleterious(0.02) possibly_damaging(0.511) TCGA-CG-5728-01 16 72834006 72834006 A G ZFHX3 Missense_Mutation p.M1296T 0.08 benign(0.34) TCGA-CG-5728-01 16 72993954 72993954 G T ZFHX3 Missense_Mutation p.H31N 0.20 benign(0.346) TCGA-CG-5728-01 16 731710 731710 A C JMJD8 3'UTR 0.26 TCGA-CG-5728-01 16 74335455 74335456 - G PSMD7 Frame_Shift_Ins p.E89Gfs*12 0.21 TCGA-CG-5728-01 16 74706168 74706168 A G MLKL 3'UTR 0.09 TCGA-CG-5728-01 16 79245555 79245555 G A WWOX Silent p.E369E 0.06 TCGA-CG-5728-01 16 80638416 80638416 G A CDYL2 Missense_Mutation p.R464W 0.18 deleterious(0) probably_damaging(1) TCGA-CG-5728-01 16 81398967 81398967 G A GAN Silent p.V462V 0.20 TCGA-CG-5728-01 16 830412 830412 C T MSLNL Missense_Mutation p.V197M 0.19 benign(0.004) TCGA-CG-5728-01 16 84217343 84217343 C T TAF1C Silent p.P60P 0.17 TCGA-CG-5728-01 16 84227613 84227613 A - ADAD2 Frame_Shift_Del p.V142Cfs*12 0.11 TCGA-CG-5728-01 16 86575788 86575788 G A MTHFSD Silent p.A158A 0.25 TCGA-CG-5728-01 16 88695190 88695190 C T ZC3H18 Missense_Mutation p.R832C 0.08 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-CG-5728-01 16 8987926 8987926 C T USP7 Missense_Mutation p.D1080N 0.23 deleterious(0) probably_damaging(0.98) TCGA-CG-5728-01 17 10293647 10293647 A G MYH8 3'UTR 0.07 TCGA-CG-5728-01 17 11648122 11648122 C T DNAH9 Silent p.Y2040Y 0.22 TCGA-CG-5728-01 17 12016623 12016623 G A MAP2K4 Silent p.Q253Q 0.17 TCGA-CG-5728-01 17 12028690 12028690 T C MAP2K4 Splice_Site p.X297_splice 0.15 TCGA-CG-5728-01 17 1264466 1264466 C T YWHAE Silent p.T166T 0.19 TCGA-CG-5728-01 17 1373490 1373490 C T MYO1C Silent p.T835T 0.15 TCGA-CG-5728-01 17 14110390 14110390 C T COX10 Missense_Mutation p.R398C 0.21 deleterious(0) probably_damaging(0.982) TCGA-CG-5728-01 17 1549887 1549887 G T RILP Missense_Mutation p.A352D 0.17 deleterious(0.02) benign(0.367) TCGA-CG-5728-01 17 16365691 16365691 T C FAM211A Missense_Mutation p.M86V 0.21 deleterious(0.01) probably_damaging(0.915) TCGA-CG-5728-01 17 1637274 1637274 C T WDR81 Missense_Mutation p.S1648L 0.17 deleterious(0.02) benign(0.027) TCGA-CG-5728-01 17 18062941 18062941 A G MYO15A Missense_Mutation p.D3084G 0.11 unknown(0) TCGA-CG-5728-01 17 18219725 18219725 G A SMCR8 Missense_Mutation p.V208M 0.23 deleterious(0) probably_damaging(1) TCGA-CG-5728-01 17 18653319 18653319 C T FBXW10 Intron 0.16 TCGA-CG-5728-01 17 1936832 1936833 - C DPH1 Frame_Shift_Ins p.E40* 0.28 TCGA-CG-5728-01 17 19729489 19729489 A - ULK2 Frame_Shift_Del p.F266Lfs*11 0.10 TCGA-CG-5728-01 17 19839741 19839741 T C AKAP10 Missense_Mutation p.Y442C 0.08 deleterious(0) probably_damaging(0.999) TCGA-CG-5728-01 17 21826146 21826146 C T FAM27L RNA 0.13 TCGA-CG-5728-01 17 2222212 2222212 C T SRR Missense_Mutation p.P130S 0.07 tolerated(0.07) benign(0.015) TCGA-CG-5728-01 17 2594064 2594065 - T CLUH Frame_Shift_Ins p.D1252Rfs*24 0.25 TCGA-CG-5728-01 17 27042506 27042506 G T RAB34 Missense_Mutation p.N190K 0.21 deleterious(0) possibly_damaging(0.637) TCGA-CG-5728-01 17 29654775 29654780 ACCAAG - NF1 In_Frame_Del p.T1843_K1844del 0.19 TCGA-CG-5728-01 17 30183884 30183884 C T COPRS Missense_Mutation p.A34T 0.08 tolerated_low_confidence(0.08) benign(0.056) TCGA-CG-5728-01 17 31048090 31048090 G A MYO1D Missense_Mutation p.R622C 0.05 deleterious(0) probably_damaging(1) TCGA-CG-5728-01 17 33954650 33954650 G A AP2B1 Missense_Mutation p.V354I 0.23 deleterious(0.04) benign(0.072) TCGA-CG-5728-01 17 34050800 34050800 G A AP2B1 3'UTR 0.16 TCGA-CG-5728-01 17 34182245 34182245 C A C17orf66 Missense_Mutation p.R512L 0.18 deleterious(0.01) benign(0.349) TCGA-CG-5728-01 17 3432285 3432285 C T TRPV3 Missense_Mutation p.R416Q 0.04 deleterious(0.03) probably_damaging(0.999) TCGA-CG-5728-01 17 35486328 35486328 G A ACACA Silent p.Y1969Y 0.24 TCGA-CG-5728-01 17 36861965 36861965 G T MLLT6 Missense_Mutation p.G27V 0.14 deleterious(0) unknown(0) TCGA-CG-5728-01 17 36896593 36896593 G A PCGF2 Silent p.C21C 0.15 TCGA-CG-5728-01 17 37822429 37822429 A G TCAP 3'UTR 0.17 TCGA-CG-5728-01 17 38026975 38026975 T A ZPBP2 Missense_Mutation p.N49K 0.10 tolerated(0.26) benign(0.221) TCGA-CG-5728-01 17 38153851 38153851 G - PSMD3 3'UTR 0.15 TCGA-CG-5728-01 17 3819462 3819462 G - P2RX1 Frame_Shift_Del p.R20Afs*16 0.25 TCGA-CG-5728-01 17 3850844 3850844 C T ATP2A3 Silent p.P312P 0.25 TCGA-CG-5728-01 17 38793825 38793825 C A SMARCE1 Splice_Site p.X53_splice 0.22 TCGA-CG-5728-01 17 38935850 38935850 G A KRT27 Silent p.D292D 0.19 TCGA-CG-5728-01 17 38938700 38938700 C T KRT27 Missense_Mutation p.G16R 0.17 deleterious(0.04) benign(0.004) TCGA-CG-5728-01 17 39150246 39150246 G A KRTAP3-3 Missense_Mutation p.T35I 0.16 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CG-5728-01 17 39596889 39596889 A G KRT38 Silent p.Y95Y 0.20 TCGA-CG-5728-01 17 39596907 39596907 A G KRT38 Silent p.I89I 0.23 TCGA-CG-5728-01 17 39623520 39623520 G - KRT32 Frame_Shift_Del p.R20Gfs*10 0.19 TCGA-CG-5728-01 17 39674627 39674627 G A KRT15 Silent p.C151C 0.31 TCGA-CG-5728-01 17 40011390 40011390 C T KLHL11 Silent p.T243T 0.23 TCGA-CG-5728-01 17 40371806 40371806 G A STAT5B Missense_Mutation p.T202M 0.32 deleterious(0.03) probably_damaging(0.977) TCGA-CG-5728-01 17 40375459 40375459 T - STAT5B Frame_Shift_Del p.K164Sfs*17 0.28 TCGA-CG-5728-01 17 40459717 40459717 A G STAT5A Missense_Mutation p.T628A 0.21 deleterious(0) possibly_damaging(0.86) TCGA-CG-5728-01 17 40716828 40716828 G A COASY Silent p.A412A 0.20 TCGA-CG-5728-01 17 41246445 41246445 T C BRCA1 Missense_Mutation p.E368G 0.07 deleterious(0.01) benign(0.037) TCGA-CG-5728-01 17 41908667 41908667 T C MPP3 Missense_Mutation p.Y56C 0.25 deleterious(0.03) probably_damaging(0.99) TCGA-CG-5728-01 17 42397752 42397752 A G SLC25A39 Missense_Mutation p.V285A 0.09 deleterious(0.01) benign(0.032) TCGA-CG-5728-01 17 42475537 42475537 G A GPATCH8 Missense_Mutation p.A1303V 0.05 deleterious(0.03) unknown(0) TCGA-CG-5728-01 17 42476193 42476193 G A GPATCH8 Silent p.D1084D 0.17 TCGA-CG-5728-01 17 42635082 42635082 G A FZD2 Missense_Mutation p.R9H 0.36 tolerated_low_confidence(0.13) unknown(0) TCGA-CG-5728-01 17 43531400 43531400 G A PLEKHM1 Silent p.R606R 0.11 TCGA-CG-5728-01 17 43553069 43553069 T C PLEKHM1 Missense_Mutation p.H107R 0.16 tolerated(0.52) benign(0.016) TCGA-CG-5728-01 17 43906680 43906680 C T CRHR1 Missense_Mutation p.R143W 0.31 tolerated(0.18) benign(0.002) TCGA-CG-5728-01 17 43922863 43922863 A G SPPL2C Silent p.T197T 0.14 TCGA-CG-5728-01 17 45377889 45377889 C T ITGB3 Silent p.D653D 0.11 TCGA-CG-5728-01 17 45888185 45888185 G - OSBPL7 Frame_Shift_Del p.P585Lfs*18 0.13 TCGA-CG-5728-01 17 46628219 46628219 C - HOXB3 Frame_Shift_Del p.G258Afs*19 0.21 TCGA-CG-5728-01 17 47004503 47004503 C A UBE2Z 3'UTR 0.18 TCGA-CG-5728-01 17 47587858 47587858 C A NGFR Missense_Mutation p.P218H 0.14 deleterious(0) possibly_damaging(0.72) TCGA-CG-5728-01 17 48433494 48433494 G A XYLT2 Missense_Mutation p.V452M 0.24 deleterious(0.04) probably_damaging(0.988) TCGA-CG-5728-01 17 48435836 48435836 C T XYLT2 Missense_Mutation p.P737L 0.17 tolerated(0.72) benign(0.027) TCGA-CG-5728-01 17 48561095 48561095 C T RSAD1 Missense_Mutation p.R361C 0.19 deleterious(0) probably_damaging(1) TCGA-CG-5728-01 17 4883674 4883674 G A CAMTA2 Nonsense_Mutation p.R338* 0.11 TCGA-CG-5728-01 17 49247316 49247316 G A NME1-NME2 Missense_Mutation p.V198M 0.13 deleterious(0.01) probably_damaging(0.929) TCGA-CG-5728-01 17 51900915 51900915 G A KIF2B Missense_Mutation p.R174H 0.05 deleterious(0) probably_damaging(0.977) TCGA-CG-5728-01 17 5337060 5337060 C T C1QBP Missense_Mutation p.V169M 0.20 tolerated(0.12) probably_damaging(0.987) TCGA-CG-5728-01 17 56348170 56348170 G T MPO Silent p.A695A 0.07 TCGA-CG-5728-01 17 56584616 56584616 G A MTMR4 Missense_Mutation p.R244C 0.07 deleterious(0) probably_damaging(1) TCGA-CG-5728-01 17 56598229 56598229 G A SEPT4 Intron 0.22 TCGA-CG-5728-01 17 56620624 56620624 G A C17orf47 Silent p.S308S 0.26 TCGA-CG-5728-01 17 57760780 57760780 G A CLTC Nonsense_Mutation p.W1358* 0.05 TCGA-CG-5728-01 17 58343335 58343335 A G USP32 Splice_Site p.X309_splice 0.21 TCGA-CG-5728-01 17 59560552 59560552 C T TBX4 Missense_Mutation p.P438L 0.18 deleterious(0) probably_damaging(0.999) TCGA-CG-5728-01 17 60059688 60059688 G A MED13 Missense_Mutation p.R1226C 0.20 deleterious(0.02) possibly_damaging(0.847) TCGA-CG-5728-01 17 61466684 61466684 A G TANC2 Missense_Mutation p.I870V 0.32 tolerated(0.06) benign(0.088) TCGA-CG-5728-01 17 61611294 61611294 G A KCNH6 Silent p.A241A 0.23 TCGA-CG-5728-01 17 61710073 61710073 G A MAP3K3 Missense_Mutation p.D13N 0.15 deleterious(0) probably_damaging(1) TCGA-CG-5728-01 17 61908237 61908237 G A PSMC5 Silent p.T207T 0.07 TCGA-CG-5728-01 17 61987659 61987659 G A CSHL1 Silent p.L112L 0.08 TCGA-CG-5728-01 17 64216830 64216830 G A APOH Missense_Mutation p.T149M 0.22 tolerated(0.09) benign(0.002) TCGA-CG-5728-01 17 65628318 65628318 C T PITPNC1 Silent p.C142C 0.08 TCGA-CG-5728-01 17 66039402 66039402 C T KPNA2 Nonsense_Mutation p.R285* 0.19 TCGA-CG-5728-01 17 66265357 66265357 T C SLC16A6 Silent p.S484S 0.13 TCGA-CG-5728-01 17 66924149 66924149 C T ABCA8 Missense_Mutation p.G394D 0.23 tolerated(1) benign(0.004) TCGA-CG-5728-01 17 679152 679152 G A GLOD4 Missense_Mutation p.T90M 0.16 deleterious(0.02) possibly_damaging(0.888) TCGA-CG-5728-01 17 7131021 7131021 C T DVL2 Missense_Mutation p.G395D 0.09 tolerated(0.64) possibly_damaging(0.811) TCGA-CG-5728-01 17 7216419 7216419 G - GPS2 Frame_Shift_Del p.Q277Rfs*68 0.18 TCGA-CG-5728-01 17 73491708 73491708 C T KIAA0195 Silent p.T976T 0.23 TCGA-CG-5728-01 17 73888555 73888555 C A TRIM65 Missense_Mutation p.W179C 0.18 tolerated(0.11) benign(0.032) TCGA-CG-5728-01 17 73919411 73919411 A G FBF1 Missense_Mutation p.L412P 0.15 tolerated(0.46) benign(0.187) TCGA-CG-5728-01 17 73947496 73947496 C A ACOX1 Missense_Mutation p.E369D 0.31 deleterious(0.01) probably_damaging(0.965) TCGA-CG-5728-01 17 7794025 7794025 G A CHD3 Missense_Mutation p.R176Q 0.19 benign(0.238) TCGA-CG-5728-01 17 78023884 78023884 C A CCDC40 Silent p.R321R 0.14 TCGA-CG-5728-01 17 7803219 7803219 G T CHD3 Missense_Mutation p.E909D 0.08 possibly_damaging(0.523) TCGA-CG-5728-01 17 79508401 79508401 G A C17orf70 Silent p.A816A 0.44 TCGA-CG-5728-01 17 79517607 79517607 C T C17orf70 Missense_Mutation p.E305K 0.24 tolerated(0.41) benign(0.027) TCGA-CG-5728-01 17 79991663 79991663 G A RAC3 Silent p.P179P 0.25 TCGA-CG-5728-01 17 80017938 80017938 C T DUS1L Missense_Mutation p.A352T 0.21 tolerated(0.57) benign(0.001) TCGA-CG-5728-01 17 8215418 8215418 C T ARHGEF15 Missense_Mutation p.R21C 0.28 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-CG-5728-01 17 8396271 8396273 CTT - MYH10 In_Frame_Del p.K1427del 0.30 TCGA-CG-5728-01 17 8404186 8404186 T C MYH10 Silent p.T1234T 0.18 TCGA-CG-5728-01 17 9804356 9804356 G A RCVRN Missense_Mutation p.P148L 0.21 deleterious(0.02) probably_damaging(1) TCGA-CG-5728-01 18 12308711 12308711 A G TUBB6 Missense_Mutation p.H28R 0.05 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CG-5728-01 18 12454398 12454398 G C SPIRE1 Missense_Mutation p.L575V 0.22 deleterious(0) probably_damaging(0.999) TCGA-CG-5728-01 18 12830993 12830993 C T PTPN2 Silent p.Q103Q 0.09 TCGA-CG-5728-01 18 12987078 12987078 G T SEH1L 3'UTR 0.12 TCGA-CG-5728-01 18 14542736 14542736 C T POTEC Missense_Mutation p.R137Q 0.20 tolerated(0.52) benign(0) TCGA-CG-5728-01 18 224097 224097 T - THOC1 Frame_Shift_Del p.I431Ffs*2 0.24 TCGA-CG-5728-01 18 24722722 24722722 G A CHST9 Silent p.L18L 0.17 TCGA-CG-5728-01 18 31323658 31323658 A - ASXL3 Frame_Shift_Del p.T1284Pfs*10 0.17 TCGA-CG-5728-01 18 319924 319945 TCAGTAATTGGTTTTCAGTGCT CAGTAATTGGTTTTCAGTGC COLEC12 3'UTR 0.20 TCGA-CG-5728-01 18 33775270 33775270 C T MOCOS Missense_Mutation p.L65F 0.21 deleterious(0) probably_damaging(0.968) TCGA-CG-5728-01 18 34854283 34854283 G A CELF4 Silent p.Y264Y 0.08 TCGA-CG-5728-01 18 40695505 40695505 A - RIT2 5'UTR 0.16 TCGA-CG-5728-01 18 42531185 42531185 G A SETBP1 Missense_Mutation p.R627H 0.21 tolerated(0.42) probably_damaging(0.997) TCGA-CG-5728-01 18 43328373 43328373 G A SLC14A1 Missense_Mutation p.A383T 0.21 tolerated(0.35) benign(0.02) TCGA-CG-5728-01 18 53252552 53252552 T - TCF4 Frame_Shift_Del p.N137Mfs*16 0.16 TCGA-CG-5728-01 18 5443867 5443867 G T EPB41L3 Missense_Mutation p.P167T 0.20 deleterious(0) probably_damaging(0.967) TCGA-CG-5728-01 18 55019998 55019998 C T ST8SIA3 5'UTR 0.24 TCGA-CG-5728-01 18 5891983 5891983 C T TMEM200C Missense_Mutation p.R27H 0.19 deleterious(0.02) probably_damaging(0.991) TCGA-CG-5728-01 18 59221564 59221564 C T CDH20 Missense_Mutation p.A681V 0.26 tolerated(0.15) possibly_damaging(0.902) TCGA-CG-5728-01 18 60609077 60609077 G A PHLPP1 Silent p.V1029V 0.12 TCGA-CG-5728-01 18 61654298 61654298 C T SERPINB8 Missense_Mutation p.T304I 0.18 tolerated(0.06) benign(0.214) TCGA-CG-5728-01 18 66504311 66504311 A - CCDC102B Frame_Shift_Del p.K105Nfs*21 0.11 TCGA-CG-5728-01 18 67563239 67563239 G A CD226 Missense_Mutation p.S142L 0.05 tolerated(0.06) benign(0.298) TCGA-CG-5728-01 18 71825638 71825638 C T TIMM21 Nonsense_Mutation p.R224* 0.20 TCGA-CG-5728-01 18 74639309 74639309 T C ZNF236 Missense_Mutation p.L1415P 0.20 deleterious(0.03) benign(0.003) TCGA-CG-5728-01 18 76757103 76757103 C T SALL3 Silent p.N1228N 0.23 TCGA-CG-5728-01 18 77170868 77170868 C T NFATC1 Missense_Mutation p.A185V 0.21 tolerated(0.16) benign(0.368) TCGA-CG-5728-01 18 77287538 77287538 A G NFATC1 Missense_Mutation p.I918M 0.06 deleterious(0.01) benign(0.191) TCGA-CG-5728-01 18 77475153 77475153 G A CTDP1 Missense_Mutation p.G565R 0.23 deleterious(0) probably_damaging(1) TCGA-CG-5728-01 18 8370934 8370934 A G PTPRM Missense_Mutation p.D1034G 0.20 deleterious(0) probably_damaging(1) TCGA-CG-5728-01 18 9887504 9887504 A G TXNDC2 Missense_Mutation p.D343G 0.16 tolerated(0.24) benign(0.099) TCGA-CG-5728-01 18 9887579 9887579 A T TXNDC2 Missense_Mutation p.Q368L 0.14 tolerated(0.66) benign(0.034) TCGA-CG-5728-01 19 1004645 1004645 C T GRIN3B Missense_Mutation p.A382V 0.26 tolerated(0.09) benign(0.058) TCGA-CG-5728-01 19 10419286 10419286 G - ZGLP1 Frame_Shift_Del p.W25Gfs*107 0.23 TCGA-CG-5728-01 19 11097631 11097631 G A SMARCA4 Missense_Mutation p.G271R 0.13 possibly_damaging(0.559) TCGA-CG-5728-01 19 11488473 11488473 A - EPOR 3'UTR 0.55 TCGA-CG-5728-01 19 11527510 11527510 C T RGL3 Missense_Mutation p.G124E 0.16 tolerated(0.08) probably_damaging(0.946) TCGA-CG-5728-01 19 11552119 11552119 C T PRKCSH Missense_Mutation p.R139C 0.18 deleterious(0.01) probably_damaging(0.985) TCGA-CG-5728-01 19 12155486 12155486 T - ZNF878 Frame_Shift_Del p.R244Dfs*102 0.22 TCGA-CG-5728-01 19 12384448 12384448 A - ZNF44 Frame_Shift_Del p.W256Gfs*34 0.21 TCGA-CG-5728-01 19 13063564 13063564 C T RAD23A Missense_Mutation p.A292V 0.21 tolerated(0.09) benign(0.002) TCGA-CG-5728-01 19 1468467 1468467 G A APC2 Missense_Mutation p.G1723R 0.10 benign(0.026) TCGA-CG-5728-01 19 15839381 15839381 T - OR10H2 Frame_Shift_Del p.L178Yfs*8 0.20 TCGA-CG-5728-01 19 15839703 15839703 C T OR10H2 Missense_Mutation p.P284S 0.06 deleterious(0.03) possibly_damaging(0.895) TCGA-CG-5728-01 19 16003188 16003188 C T CYP4F2 Silent p.T152T 0.12 TCGA-CG-5728-01 19 1619109 1619109 C T TCF3 Splice_Site p.X484_splice 0.11 TCGA-CG-5728-01 19 16632356 16632356 G A CHERP Missense_Mutation p.P697L 0.19 deleterious(0.02) benign(0.431) TCGA-CG-5728-01 19 16689216 16689216 C T MED26 Missense_Mutation p.R26Q 0.25 tolerated(0.35) benign(0.07) TCGA-CG-5728-01 19 16874647 16874647 G A NWD1 Silent p.P714P 0.18 TCGA-CG-5728-01 19 17476311 17476311 C T PLVAP Silent p.A321A 0.21 TCGA-CG-5728-01 19 18368203 18368203 C T KIAA1683 Silent p.P1297P 0.16 TCGA-CG-5728-01 19 18368702 18368702 C T KIAA1683 Missense_Mutation p.R1131H 0.11 deleterious(0.04) benign(0.087) TCGA-CG-5728-01 19 19638818 19638818 G - NDUFA13 Frame_Shift_Del p.E108Sfs*13 0.29 TCGA-CG-5728-01 19 19790992 19790992 G C ZNF101 Missense_Mutation p.Q398H 0.20 tolerated(0.06) benign(0.414) TCGA-CG-5728-01 19 19905597 19905598 TC - ZNF506 Frame_Shift_Del p.K367Tfs*5 0.18 TCGA-CG-5728-01 19 20003659 20003659 T C ZNF253 3'UTR 0.15 TCGA-CG-5728-01 19 22363169 22363169 T C ZNF676 Silent p.K450K 0.07 TCGA-CG-5728-01 19 22363511 22363511 G A ZNF676 Silent p.P336P 0.07 TCGA-CG-5728-01 19 22375886 22375886 A T ZNF676 Missense_Mutation p.I21N 0.06 deleterious(0) possibly_damaging(0.601) TCGA-CG-5728-01 19 23543818 23543818 C G ZNF91 Missense_Mutation p.E655Q 0.05 deleterious(0.03) probably_damaging(0.975) TCGA-CG-5728-01 19 23927062 23927062 A C ZNF681 Silent p.A430A 0.15 TCGA-CG-5728-01 19 2737213 2737213 C T SLC39A3 Missense_Mutation p.V15M 0.08 tolerated(0.09) benign(0.047) TCGA-CG-5728-01 19 287508 287508 A G PPAP2C Missense_Mutation p.C171R 0.18 deleterious(0.01) probably_damaging(1) TCGA-CG-5728-01 19 287537 287537 C T PPAP2C Missense_Mutation p.C161Y 0.05 deleterious(0.02) probably_damaging(0.993) TCGA-CG-5728-01 19 2877353 2877353 A G ZNF556 Missense_Mutation p.N133D 0.18 tolerated(0.17) benign(0.292) TCGA-CG-5728-01 19 30313408 30313408 G T CCNE1 Missense_Mutation p.M336I 0.19 tolerated(0.31) benign(0.004) TCGA-CG-5728-01 19 32845518 32845521 GAGA - ZNF507 Frame_Shift_Del p.R595Kfs*13 0.22 TCGA-CG-5728-01 19 33487079 33487079 G A RHPN2 Missense_Mutation p.R425W 0.22 deleterious(0.02) probably_damaging(1) TCGA-CG-5728-01 19 3382066 3382066 G A NFIC Silent p.R129R 0.25 TCGA-CG-5728-01 19 35791095 35791095 A T MAG Missense_Mutation p.E253V 0.25 deleterious(0) possibly_damaging(0.801) TCGA-CG-5728-01 19 36149530 36149530 C T COX6B1 Missense_Mutation p.T81M 0.11 tolerated(0.06) benign(0.223) TCGA-CG-5728-01 19 36276343 36276343 G A ARHGAP33 Missense_Mutation p.A634T 0.23 tolerated_low_confidence(0.09) possibly_damaging(0.682) TCGA-CG-5728-01 19 36293120 36293120 T C PRODH2 Missense_Mutation p.M467V 0.15 deleterious(0) probably_damaging(0.998) TCGA-CG-5728-01 19 36369799 36369799 C T APLP1 Missense_Mutation p.A553V 0.05 tolerated(0.66) benign(0.002) TCGA-CG-5728-01 19 36501765 36501765 G - ALKBH6 Intron 0.24 TCGA-CG-5728-01 19 3767394 3767394 T C MRPL54 3'UTR 0.17 TCGA-CG-5728-01 19 37871245 37871245 A C ZNF527 Missense_Mutation p.E76A 0.16 tolerated(0.07) benign(0.022) TCGA-CG-5728-01 19 38103018 38103018 T - ZNF540 Frame_Shift_Del p.F281Lfs*4 0.12 TCGA-CG-5728-01 19 3834969 3834969 C T ZFR2 Silent p.P22P 0.26 TCGA-CG-5728-01 19 38876360 38876360 G A GGN Silent p.P514P 0.26 TCGA-CG-5728-01 19 39592114 39592114 C T PAPL Silent p.N350N 0.16 TCGA-CG-5728-01 19 39868176 39868178 ATC - SAMD4B In_Frame_Del p.I388del 0.16 TCGA-CG-5728-01 19 39964163 39964163 T C SUPT5H Splice_Site p.X831_splice 0.14 TCGA-CG-5728-01 19 4024034 4024034 T C PIAS4 Missense_Mutation p.V152A 0.13 tolerated(0.53) possibly_damaging(0.827) TCGA-CG-5728-01 19 40832280 40832280 G A C19orf47 Missense_Mutation p.R222C 0.28 deleterious(0) probably_damaging(0.982) TCGA-CG-5728-01 19 40993644 40993644 G T SPTBN4 Missense_Mutation p.W70C 0.16 deleterious(0) probably_damaging(0.931) TCGA-CG-5728-01 19 41086826 41086826 C T SHKBP1 Silent p.G276G 0.08 TCGA-CG-5728-01 19 42128059 42128059 G T CEACAM4 Silent p.A169A 0.27 TCGA-CG-5728-01 19 42462889 42462889 C T RABAC1 Missense_Mutation p.V90M 0.16 deleterious(0.01) possibly_damaging(0.541) TCGA-CG-5728-01 19 42752808 42752808 G A ERF Missense_Mutation p.R486W 0.18 deleterious(0) possibly_damaging(0.876) TCGA-CG-5728-01 19 42752834 42752834 C T ERF Missense_Mutation p.C477Y 0.16 deleterious(0) possibly_damaging(0.831) TCGA-CG-5728-01 19 42795609 42795609 C - CIC Frame_Shift_Del p.A900Pfs*24 0.32 TCGA-CG-5728-01 19 42848707 42848707 G A MEGF8 Missense_Mutation p.V635M 0.41 deleterious(0) probably_damaging(0.957) TCGA-CG-5728-01 19 42914843 42914843 C T LIPE Silent p.A345A 0.28 TCGA-CG-5728-01 19 43372462 43372462 C T PSG1 Missense_Mutation p.R345H 0.18 tolerated(0.41) benign(0.003) TCGA-CG-5728-01 19 4361746 4361746 C T SH3GL1 Missense_Mutation p.E320K 0.28 deleterious(0.03) possibly_damaging(0.464) TCGA-CG-5728-01 19 4361778 4361778 G A SH3GL1 Missense_Mutation p.P309L 0.10 deleterious(0) possibly_damaging(0.815) TCGA-CG-5728-01 19 44223764 44223764 G A IRGC Missense_Mutation p.D352N 0.30 tolerated(0.5) benign(0.255) TCGA-CG-5728-01 19 4428859 4428859 T C CHAF1A Missense_Mutation p.S526P 0.20 tolerated(0.4) benign(0.052) TCGA-CG-5728-01 19 45162145 45162145 G T PVR Missense_Mutation p.W376L 0.12 tolerated(0.4) benign(0.001) TCGA-CG-5728-01 19 45322873 45322873 C T BCAM Silent p.V551V 0.27 TCGA-CG-5728-01 19 46997818 46997818 G - PNMAL2 Frame_Shift_Del p.P302Rfs*50 0.28 TCGA-CG-5728-01 19 47884148 47884149 - C DHX34 Frame_Shift_Ins p.H1022Pfs*24 0.19 TCGA-CG-5728-01 19 48511920 48511920 C T ELSPBP1 5'UTR 0.12 TCGA-CG-5728-01 19 48789060 48789060 C T ZNF114 Missense_Mutation p.P60L 0.24 tolerated(0.16) benign(0) TCGA-CG-5728-01 19 49245072 49245072 G A IZUMO1 Missense_Mutation p.A243V 0.08 deleterious(0) probably_damaging(0.993) TCGA-CG-5728-01 19 49601926 49601926 C T SNRNP70 Missense_Mutation p.R120W 0.16 deleterious(0.01) probably_damaging(1) TCGA-CG-5728-01 19 49994179 49994179 G A RPL13A Intron 0.16 TCGA-CG-5728-01 19 50392998 50393001 CTTC - IL4I1 Frame_Shift_Del p.E566Kfs*? 0.29 TCGA-CG-5728-01 19 50399296 50399296 C T IL4I1 Missense_Mutation p.V32I 0.19 tolerated(0.19) benign(0.005) TCGA-CG-5728-01 19 50412020 50412020 G A NUP62 Missense_Mutation p.R349W 0.06 deleterious(0.03) benign(0.052) TCGA-CG-5728-01 19 5047640 5047640 T C KDM4B Missense_Mutation p.Y196H 0.12 probably_damaging(1) TCGA-CG-5728-01 19 50735186 50735186 G A MYH14 Splice_Site p.X325_splice 0.16 TCGA-CG-5728-01 19 50837608 50837609 - A KCNC3 5'Flank 0.12 TCGA-CG-5728-01 19 50951604 50951604 G A MYBPC2 Missense_Mutation p.E477K 0.19 tolerated(0.08) probably_damaging(0.969) TCGA-CG-5728-01 19 51021132 51021132 C T LRRC4B Missense_Mutation p.R613H 0.17 deleterious(0) probably_damaging(0.973) TCGA-CG-5728-01 19 5111407 5111407 G A KDM4B Intron 0.16 TCGA-CG-5728-01 19 51561877 51561877 T C KLK13 Missense_Mutation p.E188G 0.22 deleterious(0.04) probably_damaging(0.999) TCGA-CG-5728-01 19 51645558 51645558 G A SIGLEC7 5'UTR 0.33 TCGA-CG-5728-01 19 52147202 52147202 G - SIGLEC14 Frame_Shift_Del p.P281Lfs*4 0.15 TCGA-CG-5728-01 19 52272775 52272775 C T FPR2 Silent p.S288S 0.11 TCGA-CG-5728-01 19 52619216 52619216 G A ZNF616 Nonsense_Mutation p.R401* 0.16 TCGA-CG-5728-01 19 53050886 53050886 C T ZNF808 Missense_Mutation p.A62V 0.21 deleterious(0.03) benign(0.292) TCGA-CG-5728-01 19 53269926 53269926 A G ZNF600 Silent p.N361N 0.20 TCGA-CG-5728-01 19 53385079 53385079 C T ZNF320 Silent p.Q100Q 0.21 TCGA-CG-5728-01 19 53911017 53911017 A G ZNF765 Missense_Mutation p.H70R 0.13 tolerated(0.07) possibly_damaging(0.704) TCGA-CG-5728-01 19 54720953 54720953 C - LILRB3 3'UTR 0.36 TCGA-CG-5728-01 19 54744212 54744212 G T LILRA6 Nonsense_Mutation p.S399* 0.04 TCGA-CG-5728-01 19 55316444 55316444 C T KIR2DL4 Silent p.H91H 0.47 TCGA-CG-5728-01 19 55740217 55740218 TG - TMEM86B 5'UTR 0.47 TCGA-CG-5728-01 19 5587937 5587937 G A SAFB2 Silent p.R860R 0.26 TCGA-CG-5728-01 19 5621342 5621344 CTT - SAFB2 In_Frame_Del p.K84del 0.20 TCGA-CG-5728-01 19 57133126 57133126 G A ZNF71 Silent p.P157P 0.21 TCGA-CG-5728-01 19 58132911 58132911 T - ZNF134 3'UTR 0.16 TCGA-CG-5728-01 19 58189820 58189820 T C ZSCAN4 Silent p.P283P 0.08 TCGA-CG-5728-01 19 58904820 58904820 C T RPS5 Missense_Mutation p.A138V 0.18 deleterious(0) possibly_damaging(0.878) TCGA-CG-5728-01 19 58980635 58980635 G A ZNF324 Missense_Mutation p.R28H 0.16 tolerated(0.6) benign(0.001) TCGA-CG-5728-01 19 59082545 59082545 T C MZF1 Missense_Mutation p.Q71R 0.12 tolerated(0.21) benign(0.01) TCGA-CG-5728-01 19 6475354 6475354 C T DENND1C Silent p.V328V 0.14 TCGA-CG-5728-01 19 6678248 6678248 T C C3 Missense_Mutation p.K1589E 0.20 tolerated(0.07) possibly_damaging(0.595) TCGA-CG-5728-01 19 6690640 6690640 G A C3 Silent p.N1163N 0.12 TCGA-CG-5728-01 19 6736719 6736719 C - GPR108 Frame_Shift_Del p.E42Rfs*8 0.32 TCGA-CG-5728-01 19 681536 681536 G A FSTL3 Missense_Mutation p.V237M 0.28 deleterious(0) probably_damaging(1) TCGA-CG-5728-01 19 7523449 7523449 G A ARHGEF18 Missense_Mutation p.A557T 0.15 deleterious(0) probably_damaging(0.999) TCGA-CG-5728-01 19 8520329 8520329 A - HNRNPM Frame_Shift_Del p.N53Tfs*2 0.20 TCGA-CG-5728-01 19 9049967 9049967 C A MUC16 Missense_Mutation p.R10555M 0.06 possibly_damaging(0.702) TCGA-CG-5728-01 19 9083647 9083647 T C MUC16 Missense_Mutation p.H2723R 0.23 unknown(0) TCGA-CG-5728-01 1 100684226 100684226 T - DBT Frame_Shift_Del p.T171Hfs*18 0.18 TCGA-CG-5728-01 1 10364070 10364070 C T KIF1B Intron 0.25 TCGA-CG-5728-01 1 10700075 10700075 G A CASZ1 Missense_Mutation p.R1402C 0.19 deleterious_low_confidence(0) probably_damaging(1) TCGA-CG-5728-01 1 10713999 10713999 C T CASZ1 Silent p.L705L 0.08 TCGA-CG-5728-01 1 10720396 10720396 G A CASZ1 Missense_Mutation p.R235W 0.30 deleterious_low_confidence(0) probably_damaging(1) TCGA-CG-5728-01 1 107599519 107599519 T A PRMT6 Missense_Mutation p.I61N 0.10 deleterious(0) probably_damaging(0.95) TCGA-CG-5728-01 1 108303435 108303435 G A VAV3 Missense_Mutation p.R330C 0.16 deleterious(0) probably_damaging(0.996) TCGA-CG-5728-01 1 110173650 110173650 G A AMPD2 Missense_Mutation p.R839H 0.26 deleterious(0) probably_damaging(0.998) TCGA-CG-5728-01 1 111217053 111217053 C T KCNA3 Missense_Mutation p.E127K 0.16 tolerated(0.06) benign(0.278) TCGA-CG-5728-01 1 111857901 111857901 C T CHIA Silent p.A108A 0.18 TCGA-CG-5728-01 1 112305362 112305362 T C DDX20 Missense_Mutation p.W390R 0.06 tolerated(0.07) possibly_damaging(0.819) TCGA-CG-5728-01 1 11273546 11273547 - C MTOR Frame_Shift_Ins p.E1066* 0.23 TCGA-CG-5728-01 1 113253204 113253204 C T PPM1J Silent p.E416E 0.22 TCGA-CG-5728-01 1 114976275 114976277 TTC - TRIM33 In_Frame_Del p.K334del 0.25 TCGA-CG-5728-01 1 116206712 116206712 G A VANGL1 Missense_Mutation p.R212Q 0.20 tolerated(0.33) benign(0.026) TCGA-CG-5728-01 1 117122481 117122481 T G IGSF3 Missense_Mutation p.D976A 0.16 deleterious(0.04) benign(0.027) TCGA-CG-5728-01 1 1192586 1192586 A G UBE2J2 Splice_Site p.X108_splice 0.17 TCGA-CG-5728-01 1 120465373 120465373 G A NOTCH2 Missense_Mutation p.R1630C 0.17 deleterious(0) probably_damaging(0.984) TCGA-CG-5728-01 1 12089171 12089173 AGG - MIIP In_Frame_Del p.E212del 0.23 TCGA-CG-5728-01 1 12460264 12460264 G A VPS13D Silent p.T3887T 0.14 TCGA-CG-5728-01 1 1326184 1326184 C T CCNL2 Missense_Mutation p.A241T 0.19 deleterious(0) probably_damaging(1) TCGA-CG-5728-01 1 143767651 143767651 G A PPIAL4G Silent p.D66D 0.12 TCGA-CG-5728-01 1 145015864 145015864 T C RP11-326G21.1 5'Flank 0.05 TCGA-CG-5728-01 1 147091501 147091501 C - BCL9 Frame_Shift_Del p.P516Lfs*5 0.40 TCGA-CG-5728-01 1 149784833 149784833 C T HIST2H3D Missense_Mutation p.R135Q 0.18 deleterious_low_confidence(0.02) possibly_damaging(0.846) TCGA-CG-5728-01 1 149884981 149884981 C - SV2A Frame_Shift_Del p.E138Rfs*39 0.24 TCGA-CG-5728-01 1 149935967 149935967 T C OTUD7B Intron 0.24 TCGA-CG-5728-01 1 150940936 150940936 G A CERS2 Silent p.L76L 0.08 TCGA-CG-5728-01 1 150959137 150959137 G T ANXA9 Missense_Mutation p.Q204H 0.09 deleterious(0.03) benign(0.017) TCGA-CG-5728-01 1 150971889 150971889 C T FAM63A Missense_Mutation p.V361I 0.17 deleterious(0) probably_damaging(0.98) TCGA-CG-5728-01 1 151131332 151131333 - C TNFAIP8L2 Frame_Shift_Ins p.Q55Pfs*29 0.21 TCGA-CG-5728-01 1 151206963 151206963 T C PIP5K1A Silent p.R310R 0.17 TCGA-CG-5728-01 1 151259493 151259493 C T ZNF687 Silent p.S242S 0.10 TCGA-CG-5728-01 1 151785515 151785515 C T RORC Missense_Mutation p.S398N 0.28 tolerated(0.37) benign(0.122) TCGA-CG-5728-01 1 15386668 15386668 C T KAZN Missense_Mutation p.A306V 0.23 deleterious(0.05) benign(0.001) TCGA-CG-5728-01 1 154042791 154042791 T C NUP210L Missense_Mutation p.M838V 0.15 tolerated(0.09) benign(0.034) TCGA-CG-5728-01 1 154987838 154987838 G T ZBTB7B Missense_Mutation p.E268D 0.26 tolerated(0.41) benign(0.016) TCGA-CG-5728-01 1 155629928 155629928 G A YY1AP1 Silent p.A729A 0.23 TCGA-CG-5728-01 1 155726824 155726824 C T GON4L Silent p.E1814E 0.19 TCGA-CG-5728-01 1 156047022 156047022 G A MEX3A Silent p.N302N 0.17 TCGA-CG-5728-01 1 1563724 1563724 T C MIB2 Missense_Mutation p.L753P 0.26 deleterious(0) probably_damaging(0.997) TCGA-CG-5728-01 1 156616629 156616629 C T BCAN Missense_Mutation p.A43V 0.17 deleterious(0.03) benign(0.36) TCGA-CG-5728-01 1 156621265 156621265 G A BCAN Missense_Mutation p.A361T 0.19 tolerated(0.55) benign(0.005) TCGA-CG-5728-01 1 156641614 156641614 T G NES Missense_Mutation p.K789T 0.25 tolerated(0.09) benign(0.111) TCGA-CG-5728-01 1 156713188 156713188 G A HDGF 3'UTR 0.10 TCGA-CG-5728-01 1 156819062 156819062 G - INSRR Frame_Shift_Del p.R474Afs*20 0.24 TCGA-CG-5728-01 1 156821927 156821927 C T INSRR Missense_Mutation p.E232K 0.22 tolerated(0.2) benign(0.06) TCGA-CG-5728-01 1 157803265 157803265 G T CD5L Silent p.L252L 0.13 TCGA-CG-5728-01 1 158063221 158063221 C T KIRREL Missense_Mutation p.R522W 0.26 deleterious(0) probably_damaging(0.998) TCGA-CG-5728-01 1 15905525 15905525 G A AGMAT Silent p.H183H 0.16 TCGA-CG-5728-01 1 160165298 160165298 C A CASQ1 Missense_Mutation p.P209T 0.19 tolerated(0.06) benign(0.358) TCGA-CG-5728-01 1 161026241 161026241 G A ARHGAP30 Silent p.C94C 0.25 TCGA-CG-5728-01 1 161697329 161697329 C T FCRLB Silent p.S386S 0.16 TCGA-CG-5728-01 1 16199371 16199371 T C SPEN Silent p.A48A 0.21 TCGA-CG-5728-01 1 16261133 16261133 G A SPEN Missense_Mutation p.A2800T 0.08 benign(0.001) TCGA-CG-5728-01 1 16377403 16377403 G A CLCNKB Missense_Mutation p.D363N 0.16 deleterious(0) possibly_damaging(0.811) TCGA-CG-5728-01 1 16378782 16378782 C T CLCNKB Missense_Mutation p.P500S 0.20 deleterious(0) probably_damaging(1) TCGA-CG-5728-01 1 164768972 164768972 C A PBX1 Missense_Mutation p.L183M 0.08 deleterious(0.02) probably_damaging(1) TCGA-CG-5728-01 1 165182974 165182974 G A LMX1A Silent p.D191D 0.14 TCGA-CG-5728-01 1 167024259 167024259 A G GPA33 Missense_Mutation p.C261R 0.18 deleterious(0) probably_damaging(0.959) TCGA-CG-5728-01 1 167792355 167792355 C T ADCY10 Silent p.P1353P 0.25 TCGA-CG-5728-01 1 168054846 168054846 T C GPR161 Missense_Mutation p.S525G 0.17 tolerated_low_confidence(0.11) benign(0.005) TCGA-CG-5728-01 1 169694870 169694870 C A SELE Intron 0.10 TCGA-CG-5728-01 1 172389910 172389911 - A C1orf105 5'UTR 0.22 TCGA-CG-5728-01 1 175372559 175372559 G A TNR Silent p.S231S 0.14 TCGA-CG-5728-01 1 176525653 176525653 T G PAPPA2 Missense_Mutation p.H65Q 0.21 deleterious_low_confidence(0.02) benign(0.361) TCGA-CG-5728-01 1 176659457 176659457 C T PAPPA2 Silent p.T774T 0.17 TCGA-CG-5728-01 1 177001708 177001708 C T ASTN1 Missense_Mutation p.R250H 0.20 tolerated_low_confidence(0.06) probably_damaging(0.997) TCGA-CG-5728-01 1 180243505 180243505 T C LHX4 Missense_Mutation p.S322P 0.22 tolerated(0.29) benign(0.07) TCGA-CG-5728-01 1 180904834 180904835 AC - KIAA1614 Frame_Shift_Del p.I599Rfs*20 0.21 TCGA-CG-5728-01 1 181018395 181018395 A G MR1 Missense_Mutation p.Q92R 0.27 deleterious(0) possibly_damaging(0.744) TCGA-CG-5728-01 1 182555837 182555837 G A RNASEL Silent p.N35N 0.24 TCGA-CG-5728-01 1 183920195 183920195 C T COLGALT2 Missense_Mutation p.R361H 0.22 tolerated(0.24) benign(0.081) TCGA-CG-5728-01 1 185962394 185962394 C T HMCN1 Missense_Mutation p.T1153I 0.23 probably_damaging(0.997) TCGA-CG-5728-01 1 186083133 186083133 C - HMCN1 Frame_Shift_Del p.Q3720Rfs*4 0.15 TCGA-CG-5728-01 1 186114613 186114613 G A HMCN1 Missense_Mutation p.R4782H 0.21 probably_damaging(0.994) TCGA-CG-5728-01 1 190067293 190067293 C T BRINP3 Missense_Mutation p.R719H 0.22 tolerated(0.19) benign(0.002) TCGA-CG-5728-01 1 193205392 193205392 C T CDC73 Silent p.R441R 0.23 TCGA-CG-5728-01 1 196706662 196706662 G T CFH Missense_Mutation p.R885M 0.32 tolerated(0.09) possibly_damaging(0.59) TCGA-CG-5728-01 1 197128451 197128451 T G ZBTB41 3'UTR 0.04 TCGA-CG-5728-01 1 200377909 200377909 T G ZNF281 Missense_Mutation p.K309Q 0.22 deleterious(0) probably_damaging(0.997) TCGA-CG-5728-01 1 200635401 200635401 A G DDX59 Silent p.S156S 0.23 TCGA-CG-5728-01 1 201356058 201356058 C T LAD1 Missense_Mutation p.R144Q 0.10 deleterious(0.02) possibly_damaging(0.676) TCGA-CG-5728-01 1 202128473 202128473 C - PTPN7 Frame_Shift_Del p.A125Qfs*3 0.24 TCGA-CG-5728-01 1 202722105 202722105 C T KDM5B Silent p.V543V 0.20 TCGA-CG-5728-01 1 204518448 204518448 G A MDM4 Missense_Mutation p.V371I 0.26 tolerated(0.79) benign(0.052) TCGA-CG-5728-01 1 205031109 205031109 G A CNTN2 Missense_Mutation p.G364R 0.32 deleterious(0) probably_damaging(0.997) TCGA-CG-5728-01 1 205053001 205053001 C T TMEM81 Missense_Mutation p.A150T 0.06 tolerated(0.4) benign(0.024) TCGA-CG-5728-01 1 205588888 205588888 T - ELK4 Intron 0.14 TCGA-CG-5728-01 1 207111045 207111045 G A PIGR Missense_Mutation p.T147M 0.27 deleterious(0) probably_damaging(0.953) TCGA-CG-5728-01 1 209790820 209790820 C - LAMB3 Frame_Shift_Del p.A1055Qfs*18 0.32 TCGA-CG-5728-01 1 209803987 209803987 C T LAMB3 Missense_Mutation p.E306K 0.34 deleterious(0.02) benign(0.297) TCGA-CG-5728-01 1 21051063 21051063 C T SH2D5 Silent p.E152E 0.26 TCGA-CG-5728-01 1 210637863 210637863 G A HHAT Missense_Mutation p.A292T 0.21 tolerated(0.06) probably_damaging(0.996) TCGA-CG-5728-01 1 211444604 211444604 G T RCOR3 Missense_Mutation p.G85V 0.11 tolerated(0.27) probably_damaging(1) TCGA-CG-5728-01 1 213445950 213445950 T C RPS6KC1 Silent p.P1058P 0.24 TCGA-CG-5728-01 1 214178556 214178556 T - PROX1 Frame_Shift_Del p.Y594Ifs*10 0.18 TCGA-CG-5728-01 1 214638039 214638039 C T PTPN14 Silent p.T36T 0.09 TCGA-CG-5728-01 1 216850489 216850489 A G ESRRG Missense_Mutation p.I139T 0.23 tolerated(0.06) benign(0.39) TCGA-CG-5728-01 1 21890655 21890655 C T ALPL Silent p.S198S 0.11 TCGA-CG-5728-01 1 22206641 22206641 C A HSPG2 Missense_Mutation p.G768C 0.15 probably_damaging(1) TCGA-CG-5728-01 1 223176686 223176686 C T DISP1 Silent p.V649V 0.18 TCGA-CG-5728-01 1 223178672 223178672 C T DISP1 Silent p.G1311G 0.18 TCGA-CG-5728-01 1 223465929 223465929 G A SUSD4 Silent p.S71S 0.21 TCGA-CG-5728-01 1 2237529 2237529 G A SKI Missense_Mutation p.R613Q 0.44 tolerated(0.42) possibly_damaging(0.744) TCGA-CG-5728-01 1 223998198 223998199 GA - TP53BP2 Frame_Shift_Del p.Q103Gfs*14 0.18 TCGA-CG-5728-01 1 224001956 224001956 G - TP53BP2 Frame_Shift_Del p.P92Lfs*6 0.20 TCGA-CG-5728-01 1 227171262 227171262 G A ADCK3 Missense_Mutation p.V364M 0.24 deleterious(0) probably_damaging(0.997) TCGA-CG-5728-01 1 228466971 228466971 C T OBSCN Missense_Mutation p.R2837W 0.16 probably_damaging(0.992) TCGA-CG-5728-01 1 228495060 228495060 C T OBSCN Silent p.A5055A 0.38 TCGA-CG-5728-01 1 229568041 229568041 G A ACTA1 Missense_Mutation p.R198C 0.23 deleterious_low_confidence(0.01) probably_damaging(0.97) TCGA-CG-5728-01 1 22965531 22965531 C - C1QA Frame_Shift_Del p.P125Qfs*157 0.21 TCGA-CG-5728-01 1 229772467 229772467 G A URB2 Missense_Mutation p.D703N 0.12 tolerated(0.49) possibly_damaging(0.806) TCGA-CG-5728-01 1 232649957 232649957 A G SIPA1L2 Missense_Mutation p.C377R 0.08 tolerated(0.32) possibly_damaging(0.781) TCGA-CG-5728-01 1 23419294 23419294 C T LUZP1 Silent p.A487A 0.19 TCGA-CG-5728-01 1 237777646 237777646 C T RYR2 Missense_Mutation p.P1740S 0.18 benign(0.243) TCGA-CG-5728-01 1 244218598 244218598 A G ZBTB18 Missense_Mutation p.K508E 0.22 deleterious_low_confidence(0.01) probably_damaging(0.94) TCGA-CG-5728-01 1 2445527 2445527 C T PANK4 Missense_Mutation p.A497T 0.08 deleterious(0.02) possibly_damaging(0.499) TCGA-CG-5728-01 1 245927443 245927443 A - SMYD3 Frame_Shift_Del p.F362Sfs*12 0.09 TCGA-CG-5728-01 1 247614857 247614857 G A OR2B11 Missense_Mutation p.A143V 0.11 deleterious(0.01) benign(0.089) TCGA-CG-5728-01 1 247654874 247654874 T C OR2W5 RNA 0.22 TCGA-CG-5728-01 1 248844882 248844882 G - OR14I1 Frame_Shift_Del p.Q242Sfs*17 0.19 TCGA-CG-5728-01 1 25245743 25245743 G A RUNX3 Missense_Mutation p.R192W 0.20 deleterious(0) probably_damaging(1) TCGA-CG-5728-01 1 26163989 26163992 CTTT - AUNIP Frame_Shift_Del p.K45Lfs*58 0.18 TCGA-CG-5728-01 1 26881655 26881655 C T RPS6KA1 Missense_Mutation p.T266M 0.12 deleterious(0) probably_damaging(0.995) TCGA-CG-5728-01 1 27101612 27101612 C - ARID1A Frame_Shift_Del p.M1634* 0.21 TCGA-CG-5728-01 1 27426921 27426921 G A SLC9A1 Silent p.D775D 0.17 TCGA-CG-5728-01 1 27436222 27436222 C T SLC9A1 Missense_Mutation p.G287D 0.12 tolerated(0.31) benign(0.369) TCGA-CG-5728-01 1 28476770 28476770 A G PTAFR Missense_Mutation p.W255R 0.17 deleterious(0) probably_damaging(1) TCGA-CG-5728-01 1 2938781 2938781 C T ACTRT2 Silent p.H177H 0.20 TCGA-CG-5728-01 1 29587410 29587410 G A PTPRU Missense_Mutation p.C380Y 0.20 deleterious(0) probably_damaging(0.964) TCGA-CG-5728-01 1 32148593 32148593 C A COL16A1 Missense_Mutation p.G827V 0.22 unknown(0) TCGA-CG-5728-01 1 32221745 32221745 G A BAI2 Silent p.A231A 0.18 TCGA-CG-5728-01 1 32280436 32280436 C T SPOCD1 Missense_Mutation p.A167T 0.21 deleterious(0.01) possibly_damaging(0.734) TCGA-CG-5728-01 1 32508218 32508218 G A KHDRBS1 Missense_Mutation p.R442H 0.16 deleterious(0) probably_damaging(0.976) TCGA-CG-5728-01 1 32566073 32566073 C T TMEM39B Silent p.G382G 0.19 TCGA-CG-5728-01 1 32568262 32568262 C T TMEM39B Silent p.H489H 0.21 TCGA-CG-5728-01 1 33276252 33276252 C A YARS Missense_Mutation p.S107I 0.16 deleterious(0) probably_damaging(0.996) TCGA-CG-5728-01 1 34042964 34042964 C A CSMD2 Missense_Mutation p.S2505I 0.21 deleterious(0.01) possibly_damaging(0.883) TCGA-CG-5728-01 1 34209180 34209180 G A CSMD2 Missense_Mutation p.P585L 0.21 deleterious(0.02) probably_damaging(0.909) TCGA-CG-5728-01 1 35370066 35370066 C T DLGAP3 Missense_Mutation p.G307R 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-CG-5728-01 1 35650046 35650046 A G SFPQ 3'UTR 0.05 TCGA-CG-5728-01 1 36026091 36026092 - T NCDN Frame_Shift_Ins p.C115Lfs*3 0.20 TCGA-CG-5728-01 1 36557382 36557382 G A ADPRHL2 Missense_Mutation p.A158T 0.23 deleterious(0.01) probably_damaging(0.93) TCGA-CG-5728-01 1 36785329 36785329 G A SH3D21 Missense_Mutation p.M355I 0.28 deleterious(0.01) benign(0.019) TCGA-CG-5728-01 1 37948726 37948726 G A ZC3H12A Silent p.S438S 0.15 TCGA-CG-5728-01 1 38338648 38338648 A G INPP5B Missense_Mutation p.M714T 0.17 deleterious(0) possibly_damaging(0.907) TCGA-CG-5728-01 1 41250056 41250056 G T KCNQ4 Missense_Mutation p.W97C 0.19 deleterious(0.01) possibly_damaging(0.897) TCGA-CG-5728-01 1 41284205 41284205 C T KCNQ4 Silent p.A187A 0.16 TCGA-CG-5728-01 1 42657107 42657107 T C FOXJ3 Silent p.Q406Q 0.05 TCGA-CG-5728-01 1 43664312 43664312 G A WDR65 Missense_Mutation p.G475R 0.17 tolerated(1) benign(0.001) TCGA-CG-5728-01 1 43888980 43888980 C T SZT2 Missense_Mutation p.L750F 0.13 deleterious(0) probably_damaging(0.92) TCGA-CG-5728-01 1 45407190 45407190 T C EIF2B3 Missense_Mutation p.K148E 0.17 deleterious(0.04) benign(0.016) TCGA-CG-5728-01 1 45480642 45480642 G T UROD Missense_Mutation p.Q302H 0.16 deleterious(0) probably_damaging(1) TCGA-CG-5728-01 1 45973071 45973071 C T MMACHC Missense_Mutation p.P42L 0.10 deleterious(0.04) benign(0.009) TCGA-CG-5728-01 1 46496962 46496962 G T MAST2 Missense_Mutation p.A998S 0.31 tolerated_low_confidence(0.34) benign(0.129) TCGA-CG-5728-01 1 48771536 48771536 T C SPATA6 Silent p.L403L 0.06 TCGA-CG-5728-01 1 53543377 53543377 C - PODN Frame_Shift_Del p.P303Rfs*7 0.16 TCGA-CG-5728-01 1 53544350 53544350 A - PODN Frame_Shift_Del p.N438Tfs*67 0.16 TCGA-CG-5728-01 1 6246782 6246782 G A RPL22 Missense_Mutation p.R113C 0.17 tolerated(0.09) benign(0.094) TCGA-CG-5728-01 1 62916272 62916272 A - USP1 Frame_Shift_Del p.N662Mfs*2 0.26 TCGA-CG-5728-01 1 63063625 63063626 - A ANGPTL3 Frame_Shift_Ins p.I132Nfs*16 0.22 TCGA-CG-5728-01 1 65311293 65311293 C - JAK1 Frame_Shift_Del p.G673Vfs*30 0.18 TCGA-CG-5728-01 1 66834549 66834549 G A PDE4B Missense_Mutation p.R581H 0.20 deleterious(0) probably_damaging(0.989) TCGA-CG-5728-01 1 78958817 78958817 C A PTGFR Missense_Mutation p.A130D 0.04 deleterious(0) probably_damaging(1) TCGA-CG-5728-01 1 7993307 7993307 C T TNFRSF9 Silent p.A198A 0.15 TCGA-CG-5728-01 1 84647913 84647913 A - PRKACB Frame_Shift_Del p.T96Pfs*13 0.19 TCGA-CG-5728-01 1 89206848 89206848 A - PKN2 Frame_Shift_Del p.S78Vfs*5 0.11 TCGA-CG-5728-01 1 89523904 89523904 T - GBP1 Frame_Shift_Del p.D216Mfs*51 0.19 TCGA-CG-5728-01 1 89849285 89849285 C T GBP6 Silent p.A480A 0.21 TCGA-CG-5728-01 1 90398726 90398726 T C LRRC8D Silent p.V33V 0.22 TCGA-CG-5728-01 1 90400443 90400443 A G LRRC8D Missense_Mutation p.I606V 0.07 tolerated(1) benign(0.038) TCGA-CG-5728-01 1 92979232 92979232 G A EVI5 Missense_Mutation p.S805L 0.18 tolerated_low_confidence(0.1) benign(0.213) TCGA-CG-5728-01 1 93303108 93303108 T C RPL5 Missense_Mutation p.M208T 0.06 deleterious(0.03) benign(0.029) TCGA-CG-5728-01 1 95368702 95368702 G A CNN3 Silent p.N74N 0.25 TCGA-CG-5728-01 1 98165042 98165043 - T DPYD Frame_Shift_Ins p.M182Nfs*3 0.18 TCGA-CG-5728-01 20 10625879 10625879 C T JAG1 Silent p.T713T 0.20 TCGA-CG-5728-01 20 10628735 10628735 A G JAG1 Silent p.P531P 0.12 TCGA-CG-5728-01 20 13098152 13098152 G A SPTLC3 Splice_Site p.X311_splice 0.20 TCGA-CG-5728-01 20 21329003 21329003 G A XRN2 Missense_Mutation p.G600R 0.04 deleterious(0) possibly_damaging(0.903) TCGA-CG-5728-01 20 21346276 21346276 C G XRN2 Missense_Mutation p.P797R 0.20 deleterious(0.02) probably_damaging(1) TCGA-CG-5728-01 20 23377795 23377795 T C NAPB Missense_Mutation p.K70R 0.18 tolerated(0.37) benign(0.002) TCGA-CG-5728-01 20 23545639 23545639 G T CST9L Silent p.P130P 0.04 TCGA-CG-5728-01 20 30897800 30897800 G A KIF3B Missense_Mutation p.D74N 0.16 tolerated(0.06) benign(0.052) TCGA-CG-5728-01 20 30898711 30898711 G T KIF3B Missense_Mutation p.R377S 0.27 tolerated(0.17) benign(0) TCGA-CG-5728-01 20 33337956 33337956 T C NCOA6 Missense_Mutation p.K681R 0.21 probably_damaging(0.991) TCGA-CG-5728-01 20 33345770 33345770 G A NCOA6 Nonsense_Mutation p.Q261* 0.15 TCGA-CG-5728-01 20 33584501 33584501 C T MYH7B Missense_Mutation p.T1111M 0.12 probably_damaging(0.931) TCGA-CG-5728-01 20 34025412 34025412 G - GDF5 Frame_Shift_Del p.R100Dfs*23 0.18 TCGA-CG-5728-01 20 35689589 35689589 T C RBL1 Silent p.S389S 0.25 TCGA-CG-5728-01 20 36640782 36640784 GAA - TTI1 In_Frame_Del p.F479del 0.19 TCGA-CG-5728-01 20 3669851 3669851 C T SIGLEC1 Missense_Mutation p.S1674N 0.22 tolerated(0.56) benign(0.001) TCGA-CG-5728-01 20 37580194 37580194 G A FAM83D Silent p.T293T 0.07 TCGA-CG-5728-01 20 37639048 37639048 G A DHX35 Splice_Site p.X449_splice 0.20 TCGA-CG-5728-01 20 3846576 3846576 C A MAVS Missense_Mutation p.H469N 0.20 tolerated(0.05) possibly_damaging(0.794) TCGA-CG-5728-01 20 40944615 40944615 C A PTPRT Missense_Mutation p.K629N 0.08 deleterious(0) benign(0.116) TCGA-CG-5728-01 20 42232493 42232493 T - IFT52 Frame_Shift_Del p.L102Yfs*2 0.14 TCGA-CG-5728-01 20 44052984 44052984 G A PIGT Missense_Mutation p.E455K 0.14 deleterious(0) probably_damaging(0.962) TCGA-CG-5728-01 20 44506069 44506069 G A ZSWIM3 Missense_Mutation p.R291Q 0.29 tolerated(0.17) benign(0.156) TCGA-CG-5728-01 20 44640898 44640898 G A MMP9 Missense_Mutation p.A374T 0.15 deleterious(0) probably_damaging(0.972) TCGA-CG-5728-01 20 45811964 45811964 A G EYA2 Missense_Mutation p.I487M 0.08 deleterious(0) possibly_damaging(0.761) TCGA-CG-5728-01 20 47691907 47691908 - T CSE1L Frame_Shift_Ins p.E398* 0.13 TCGA-CG-5728-01 20 4913259 4913259 A G SLC23A2 5'UTR 0.09 TCGA-CG-5728-01 20 50701307 50701307 G A ZFP64 Missense_Mutation p.T576M 0.21 deleterious(0.01) probably_damaging(0.993) TCGA-CG-5728-01 20 50768705 50768705 C T ZFP64 Missense_Mutation p.A676T 0.05 deleterious_low_confidence(0.01) probably_damaging(0.99) TCGA-CG-5728-01 20 57415346 57415346 G A RP4-806M20.3 5'Flank 0.13 TCGA-CG-5728-01 20 6021879 6021879 C T LRRN4 Missense_Mutation p.C671Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-CG-5728-01 20 60589624 60589624 G A TAF4 Silent p.P500P 0.28 TCGA-CG-5728-01 20 60885264 60885264 G - LAMA5 Frame_Shift_Del p.Y3569Tfs*6 0.19 TCGA-CG-5728-01 20 60921226 60921226 A G LAMA5 Missense_Mutation p.L443P 0.11 probably_damaging(0.986) TCGA-CG-5728-01 20 61472005 61472005 C T COL9A3 Missense_Mutation p.P659L 0.38 deleterious(0) probably_damaging(1) TCGA-CG-5728-01 20 61522201 61522201 C A DIDO1 Intron 0.10 TCGA-CG-5728-01 20 61637673 61637673 G A BHLHE23 Missense_Mutation p.R136C 0.34 deleterious(0) probably_damaging(0.995) TCGA-CG-5728-01 20 61981656 61981656 C T CHRNA4 Silent p.R369R 0.16 TCGA-CG-5728-01 20 62236254 62236254 C T GMEB2 Intron 0.26 TCGA-CG-5728-01 20 62663288 62663288 G A PRPF6 Missense_Mutation p.R855Q 0.22 deleterious(0.01) possibly_damaging(0.88) TCGA-CG-5728-01 20 62664288 62664290 AGA - PRPF6 In_Frame_Del p.K925del 0.14 TCGA-CG-5728-01 20 62871235 62871235 C T MYT1 Silent p.A1072A 0.17 TCGA-CG-5728-01 20 9353043 9353043 A - PLCB4 Frame_Shift_Del p.I229Sfs*9 0.20 TCGA-CG-5728-01 21 10969092 10969092 C T TPTE Silent p.V52V 0.15 TCGA-CG-5728-01 21 16337566 16337566 C T NRIP1 Missense_Mutation p.G983E 0.15 tolerated(0.27) benign(0.263) TCGA-CG-5728-01 21 22658687 22658687 G A NCAM2 Missense_Mutation p.V146I 0.07 tolerated(0.81) benign(0.067) TCGA-CG-5728-01 21 28210011 28210011 T - ADAMTS1 Frame_Shift_Del p.R931Efs*3 0.22 TCGA-CG-5728-01 21 28337870 28337870 G A ADAMTS5 Missense_Mutation p.R281W 0.29 deleterious(0) probably_damaging(0.916) TCGA-CG-5728-01 21 30407165 30407165 G A USP16 Missense_Mutation p.G83D 0.17 tolerated(0.06) probably_damaging(0.973) TCGA-CG-5728-01 21 33840140 33840140 G A EVA1C Silent p.E206E 0.36 TCGA-CG-5728-01 21 34799320 34799320 A - IFNGR2 Frame_Shift_Del p.G183Efs*20 0.11 TCGA-CG-5728-01 21 38997732 38997732 T C KCNJ6 Missense_Mutation p.Y334C 0.11 deleterious(0) possibly_damaging(0.783) TCGA-CG-5728-01 21 43413803 43413803 T - ZBTB21 Frame_Shift_Del p.V135Cfs*3 0.21 TCGA-CG-5728-01 21 45076572 45076572 A G HSF2BP Missense_Mutation p.L28P 0.21 deleterious(0) probably_damaging(0.991) TCGA-CG-5728-01 21 45947252 45947252 C T TSPEAR Missense_Mutation p.E358K 0.23 tolerated(0.13) benign(0.005) TCGA-CG-5728-01 21 47862415 47862416 - T PCNT Frame_Shift_Ins p.L3212Ffs*3 0.21 TCGA-CG-5728-01 21 48071869 48071869 C T PRMT2 Intron 0.18 TCGA-CG-5728-01 22 17473042 17473042 G T GAB4 Missense_Mutation p.L67M 0.20 deleterious(0.02) probably_damaging(0.961) TCGA-CG-5728-01 22 18609266 18609266 C - TUBA8 Frame_Shift_Del p.Q176Rfs*14 0.16 TCGA-CG-5728-01 22 19048348 19048348 G A DGCR2 Intron 0.40 TCGA-CG-5728-01 22 19124850 19124850 C T DGCR14 Missense_Mutation p.G341S 0.18 deleterious(0.01) probably_damaging(0.989) TCGA-CG-5728-01 22 19207438 19207438 C T CLTCL1 Missense_Mutation p.V959I 0.29 deleterious(0.02) probably_damaging(0.943) TCGA-CG-5728-01 22 19381879 19381879 C T HIRA Missense_Mutation p.A270T 0.05 deleterious(0) probably_damaging(1) TCGA-CG-5728-01 22 19808148 19808148 G A GNB1L Missense_Mutation p.T76M 0.16 tolerated(0.13) benign(0.026) TCGA-CG-5728-01 22 19960457 19960457 C T ARVCF Silent p.A847A 0.15 TCGA-CG-5728-01 22 19960698 19960698 C A ARVCF Silent p.A794A 0.19 TCGA-CG-5728-01 22 20094868 20094869 - G DGCR8 Frame_Shift_Ins p.S693Vfs*9 0.19 TCGA-CG-5728-01 22 20097546 20097548 AGG - DGCR8 Splice_Site p.X748_splice 0.14 TCGA-CG-5728-01 22 20920907 20920907 C T MED15 Missense_Mutation p.P282S 0.06 deleterious_low_confidence(0.01) unknown(0) TCGA-CG-5728-01 22 21363262 21363262 C T AC002472.1 5'Flank 0.26 TCGA-CG-5728-01 22 21800421 21800421 G A HIC2 Missense_Mutation p.G413R 0.10 tolerated(0.35) benign(0.095) TCGA-CG-5728-01 22 21988657 21988657 C T CCDC116 Missense_Mutation p.P140L 0.16 deleterious(0) probably_damaging(0.998) TCGA-CG-5728-01 22 22724301 22724301 G T IGLV7-46 Missense_Mutation p.R66M 0.11 TCGA-CG-5728-01 22 23603147 23603147 A G BCR Missense_Mutation p.D491G 0.17 deleterious(0.01) possibly_damaging(0.811) TCGA-CG-5728-01 22 26688613 26688613 C T SEZ6L Silent p.A112A 0.15 TCGA-CG-5728-01 22 33670314 33670314 A G LARGE 3'UTR 0.22 TCGA-CG-5728-01 22 37578651 37578651 C T C1QTNF6 Silent p.P138P 0.19 TCGA-CG-5728-01 22 38373997 38373997 C A SOX10 Missense_Mutation p.G192C 0.23 deleterious(0.05) benign(0.366) TCGA-CG-5728-01 22 39095945 39095946 - A JOSD1 Frame_Shift_Ins p.L16Ffs*14 0.19 TCGA-CG-5728-01 22 39626130 39626130 C T PDGFB Missense_Mutation p.R187Q 0.18 tolerated(0.31) benign(0.075) TCGA-CG-5728-01 22 39884756 39884756 G A MGAT3 Silent p.T468T 0.15 TCGA-CG-5728-01 22 40662758 40662758 G T TNRC6B Missense_Mutation p.G842C 0.26 deleterious(0.01) possibly_damaging(0.778) TCGA-CG-5728-01 22 40807339 40807339 G A MKL1 3'UTR 0.19 TCGA-CG-5728-01 22 40814610 40814610 G T MKL1 Missense_Mutation p.P611H 0.12 tolerated(0.1) benign(0.169) TCGA-CG-5728-01 22 41832815 41832815 C T TOB2 Missense_Mutation p.A179T 0.20 deleterious(0) probably_damaging(0.986) TCGA-CG-5728-01 22 43435868 43435868 G T TTLL1 Missense_Mutation p.L396M 0.12 tolerated(0.23) benign(0.117) TCGA-CG-5728-01 22 44287040 44287040 C T PNPLA5 Missense_Mutation p.V110I 0.20 tolerated(1) benign(0.011) TCGA-CG-5728-01 22 45970515 45970515 G A FBLN1 Missense_Mutation p.E608K 0.22 tolerated(0.2) possibly_damaging(0.651) TCGA-CG-5728-01 22 46631044 46631044 C A PPARA Missense_Mutation p.L392I 0.25 tolerated(0.3) benign(0.007) TCGA-CG-5728-01 22 46794456 46794456 C G CELSR1 Missense_Mutation p.V1831L 0.25 tolerated(0.68) benign(0.029) TCGA-CG-5728-01 22 50277679 50277679 T - ZBED4 Frame_Shift_Del p.F125Lfs*16 0.22 TCGA-CG-5728-01 22 50686680 50686680 G T HDAC10 Missense_Mutation p.P352Q 0.16 tolerated(0.11) probably_damaging(1) TCGA-CG-5728-01 22 50714329 50714329 A G PLXNB2 Missense_Mutation p.Y1801H 0.11 deleterious(0) probably_damaging(1) TCGA-CG-5728-01 22 50898726 50898727 - G SBF1 Frame_Shift_Ins p.E1087* 0.24 TCGA-CG-5728-01 2 10045054 10045054 C T TAF1B Missense_Mutation p.R292C 0.25 tolerated(0.1) possibly_damaging(0.64) TCGA-CG-5728-01 2 102452432 102452433 AA - MAP4K4 Frame_Shift_Del p.K257Mfs*7 0.25 TCGA-CG-5728-01 2 109382947 109382947 T C RANBP2 Silent p.G1984G 0.07 TCGA-CG-5728-01 2 11317996 11317996 A G PQLC3 3'UTR 0.14 TCGA-CG-5728-01 2 113940003 113940003 G A PSD4 5'UTR 0.11 TCGA-CG-5728-01 2 114715138 114715138 A T ACTR3 3'UTR 0.22 TCGA-CG-5728-01 2 118583908 118583909 - T DDX18 Frame_Shift_Ins p.L530Ffs*21 0.28 TCGA-CG-5728-01 2 120236486 120236486 C A SCTR Missense_Mutation p.G68W 0.07 tolerated(0.12) probably_damaging(0.999) TCGA-CG-5728-01 2 120439310 120439310 G A TMEM177 Missense_Mutation p.R294H 0.08 deleterious(0.01) probably_damaging(0.998) TCGA-CG-5728-01 2 130738469 130738469 A C RAB6C 3'UTR 0.10 TCGA-CG-5728-01 2 135988440 135988440 T - ZRANB3 Frame_Shift_Del p.R533Dfs*3 0.21 TCGA-CG-5728-01 2 141081589 141081590 AT - LRP1B Frame_Shift_Del p.Y4129Wfs*5 0.22 TCGA-CG-5728-01 2 149226158 149226158 G T MBD5 Missense_Mutation p.G216C 0.05 deleterious(0.03) probably_damaging(0.984) TCGA-CG-5728-01 2 152544188 152544188 G A NEB Silent p.D825D 0.09 TCGA-CG-5728-01 2 155102337 155102337 C T GALNT13 Silent p.V233V 0.16 TCGA-CG-5728-01 2 158390497 158390497 C T ACVR1C Missense_Mutation p.R472H 0.24 deleterious(0) probably_damaging(0.999) TCGA-CG-5728-01 2 159660856 159660856 A - DAPL1 Frame_Shift_Del p.T43Qfs*21 0.17 TCGA-CG-5728-01 2 160295638 160295638 C T BAZ2B Missense_Mutation p.S261N 0.07 benign(0.213) TCGA-CG-5728-01 2 160676356 160676356 T - LY75-CD302 Frame_Shift_Del p.N1345Mfs*8 0.20 TCGA-CG-5728-01 2 160755441 160755441 A G LY75-CD302 Missense_Mutation p.L75P 0.17 deleterious(0) probably_damaging(0.991) TCGA-CG-5728-01 2 163215634 163215634 G T GCA Missense_Mutation p.V179F 0.18 deleterious(0) probably_damaging(0.913) TCGA-CG-5728-01 2 165551064 165551064 G T COBLL1 Silent p.A984A 0.13 TCGA-CG-5728-01 2 165986605 165986605 G A SCN3A Missense_Mutation p.R923W 0.07 deleterious(0) possibly_damaging(0.858) TCGA-CG-5728-01 2 167144965 167144965 T - SCN9A Frame_Shift_Del p.E433Sfs*36 0.16 TCGA-CG-5728-01 2 168106895 168106895 A G XIRP2 Missense_Mutation p.H2998R 0.15 benign(0.004) TCGA-CG-5728-01 2 168115079 168115080 - A XIRP2 3'UTR 0.19 TCGA-CG-5728-01 2 170101368 170101368 G A LRP2 Missense_Mutation p.R1089C 0.14 benign(0.195) TCGA-CG-5728-01 2 172583353 172583353 A C DYNC1I2 Missense_Mutation p.E308A 0.19 deleterious(0) benign(0.146) TCGA-CG-5728-01 2 175436236 175436236 C T WIPF1 Intron 0.19 TCGA-CG-5728-01 2 175664964 175664964 G A CHN1 Silent p.I420I 0.07 TCGA-CG-5728-01 2 17696566 17696566 A G RAD51AP2 Silent p.N1039N 0.05 TCGA-CG-5728-01 2 179428524 179428524 C T TTN Missense_Mutation p.M27445I 0.17 TCGA-CG-5728-01 2 179434204 179434204 C T TTN Missense_Mutation p.R25552Q 0.06 TCGA-CG-5728-01 2 179460530 179460530 G A TTN Missense_Mutation p.P19184L 0.25 TCGA-CG-5728-01 2 179472135 179472135 T G TTN Missense_Mutation p.E17760D 0.23 TCGA-CG-5728-01 2 17954558 17954560 TTG - GEN1 In_Frame_Del p.L355del 0.21 TCGA-CG-5728-01 2 179552924 179552924 G A TTN Missense_Mutation p.S10742L 0.17 TCGA-CG-5728-01 2 179605532 179605532 A G TTN Missense_Mutation p.L4143P 0.07 TCGA-CG-5728-01 2 179710387 179710387 T - CCDC141 Frame_Shift_Del p.N1147Ifs*35 0.25 TCGA-CG-5728-01 2 17997959 17997959 T G MSGN1 Silent p.S58S 0.18 TCGA-CG-5728-01 2 179986571 179986571 A T SESTD1 Missense_Mutation p.D456E 0.24 tolerated(0.11) benign(0) TCGA-CG-5728-01 2 179986627 179986628 - T SESTD1 Frame_Shift_Ins p.G438Rfs*23 0.23 TCGA-CG-5728-01 2 180809835 180809835 A G CWC22 3'UTR 0.14 TCGA-CG-5728-01 2 182852584 182852584 A G PPP1R1C Missense_Mutation p.T41A 0.11 deleterious(0) probably_damaging(0.994) TCGA-CG-5728-01 2 183822241 183822241 A G NCKAP1 Silent p.P661P 0.25 TCGA-CG-5728-01 2 186673611 186673611 A - FSIP2 Frame_Shift_Del p.K6617Nfs*5 0.15 TCGA-CG-5728-01 2 18765855 18765855 G A NT5C1B Silent p.D276D 0.36 TCGA-CG-5728-01 2 190620089 190620089 T - OSGEPL1 Frame_Shift_Del p.K140Sfs*18 0.22 TCGA-CG-5728-01 2 197878289 197878289 C T HNRNPA3P15 5'Flank 0.18 TCGA-CG-5728-01 2 201438019 201438019 A - SGOL2 Frame_Shift_Del p.K985Nfs*14 0.17 TCGA-CG-5728-01 2 201477410 201477410 T - AOX1 Frame_Shift_Del p.F449Lfs*44 0.16 TCGA-CG-5728-01 2 202272204 202272204 T C TRAK2 Missense_Mutation p.T70A 0.11 tolerated(0.15) benign(0.004) TCGA-CG-5728-01 2 202352370 202352372 TAT AA ALS2CR11 Frame_Shift_Del p.H1809Lfs*? 0.16 TCGA-CG-5728-01 2 203384875 203384875 T G BMPR2 Missense_Mutation p.H306Q 0.09 tolerated(0.25) probably_damaging(0.97) TCGA-CG-5728-01 2 204045236 204045236 G A NBEAL1 Splice_Site p.X2170_splice 0.22 TCGA-CG-5728-01 2 204075771 204075771 G A NBEAL1 Missense_Mutation p.G2597R 0.21 tolerated(0.07) benign(0.081) TCGA-CG-5728-01 2 215823039 215823039 C T ABCA12 Missense_Mutation p.V2027M 0.20 tolerated(0.21) possibly_damaging(0.643) TCGA-CG-5728-01 2 216226782 216226782 G A FN1 Silent p.C2424C 0.16 TCGA-CG-5728-01 2 216229623 216229623 G A FN1 Silent p.C2410C 0.27 TCGA-CG-5728-01 2 216248175 216248175 G A FN1 Silent p.T1642T 0.23 TCGA-CG-5728-01 2 216262429 216262429 G A FN1 Missense_Mutation p.A1164V 0.15 deleterious(0.04) benign(0.321) TCGA-CG-5728-01 2 216930130 216930132 CCT - PECR In_Frame_Del p.G110del 0.25 TCGA-CG-5728-01 2 216992312 216992312 A - XRCC5 Frame_Shift_Del p.E287Kfs*11 0.19 TCGA-CG-5728-01 2 217285159 217285159 C T SMARCAL1 Nonsense_Mutation p.R334* 0.09 TCGA-CG-5728-01 2 220136455 220136455 G A TUBA4B RNA 0.23 TCGA-CG-5728-01 2 223159014 223159014 G T PAX3 Missense_Mutation p.S153Y 0.15 deleterious(0) possibly_damaging(0.9) TCGA-CG-5728-01 2 223505594 223505594 A C FARSB Missense_Mutation p.I109S 0.20 tolerated(0.39) benign(0.009) TCGA-CG-5728-01 2 224463172 224463172 G C SCG2 Missense_Mutation p.Q277E 0.07 tolerated(0.97) benign(0.014) TCGA-CG-5728-01 2 225265913 225265913 C T FAM124B Silent p.L191L 0.13 TCGA-CG-5728-01 2 228153918 228153918 A G COL4A3 Silent p.P978P 0.18 TCGA-CG-5728-01 2 228211948 228211948 A G MFF Silent p.T200T 0.20 TCGA-CG-5728-01 2 228228629 228228629 C T TM4SF20 Silent p.A167A 0.22 TCGA-CG-5728-01 2 229890462 229890462 G A PID1 Silent p.H211H 0.20 TCGA-CG-5728-01 2 230020592 230020592 G A PID1 Missense_Mutation p.A71V 0.18 deleterious(0.02) benign(0.445) TCGA-CG-5728-01 2 231313824 231313824 G A SP100 Missense_Mutation p.R182Q 0.16 tolerated(0.39) benign(0) TCGA-CG-5728-01 2 231334889 231334889 G A SP100 Intron 0.24 TCGA-CG-5728-01 2 232263030 232263030 C T B3GNT7 Silent p.Y200Y 0.21 TCGA-CG-5728-01 2 232373716 232373716 G A LINC00471 RNA 0.22 TCGA-CG-5728-01 2 233721609 233721609 C T GIGYF2 3'UTR 0.21 TCGA-CG-5728-01 2 233759451 233759451 C - NGEF Intron 0.32 TCGA-CG-5728-01 2 236649677 236649677 C - AGAP1 Frame_Shift_Del p.P129Rfs*22 0.16 TCGA-CG-5728-01 2 237074908 237074908 C T GBX2 Silent p.P232P 0.24 TCGA-CG-5728-01 2 238253469 238253469 C T COL6A3 Missense_Mutation p.V2398I 0.14 unknown(0) TCGA-CG-5728-01 2 238277420 238277420 C A COL6A3 Silent p.V1562V 0.22 TCGA-CG-5728-01 2 239167156 239167156 C A PER2 Missense_Mutation p.C586F 0.20 deleterious(0) probably_damaging(0.999) TCGA-CG-5728-01 2 24098756 24098756 T - ATAD2B Frame_Shift_Del p.K307Rfs*57 0.27 TCGA-CG-5728-01 2 242194469 242194469 T C HDLBP Silent p.P395P 0.06 TCGA-CG-5728-01 2 242664463 242664463 G A ING5 3'UTR 0.12 TCGA-CG-5728-01 2 24929854 24929854 C T NCOA1 Silent p.N505N 0.23 TCGA-CG-5728-01 2 24974860 24974860 C T NCOA1 Missense_Mutation p.P1239L 0.19 tolerated(0.05) benign(0.119) TCGA-CG-5728-01 2 25964955 25964955 G A ASXL2 Silent p.C1417C 0.23 TCGA-CG-5728-01 2 27282344 27282344 G A AGBL5 Intron 0.17 TCGA-CG-5728-01 2 27423438 27423438 C T SLC5A6 Missense_Mutation p.D592N 0.19 tolerated(0.12) benign(0.003) TCGA-CG-5728-01 2 28631709 28631709 G T FOSL2 Silent p.R146R 0.19 TCGA-CG-5728-01 2 30790958 30790959 - A LCLAT1 Frame_Shift_Ins p.N222Kfs*7 0.09 TCGA-CG-5728-01 2 3261132 3261132 G A TSSC1 Silent p.S118S 0.22 TCGA-CG-5728-01 2 32800338 32800338 T C BIRC6 Silent p.G4420G 0.11 TCGA-CG-5728-01 2 3625326 3625326 A - RPS7 Frame_Shift_Del p.S108Afs*15 0.16 TCGA-CG-5728-01 2 37129804 37129804 C T STRN Silent p.T194T 0.14 TCGA-CG-5728-01 2 37334430 37334430 G A EIF2AK2 Nonsense_Mutation p.R548* 0.21 TCGA-CG-5728-01 2 37376315 37376315 G A EIF2AK2 Intron 0.15 TCGA-CG-5728-01 2 37454928 37454928 G A CEBPZ Missense_Mutation p.R470W 0.17 deleterious(0.01) probably_damaging(0.931) TCGA-CG-5728-01 2 38523609 38523609 A G ATL2 Intron 0.07 TCGA-CG-5728-01 2 54483258 54483258 C T TSPYL6 Missense_Mutation p.A11T 0.05 tolerated(0.69) benign(0.001) TCGA-CG-5728-01 2 54877104 54877104 A T SPTBN1 Missense_Mutation p.D1852V 0.14 deleterious(0) probably_damaging(0.994) TCGA-CG-5728-01 2 55490777 55490777 T - MTIF2 Frame_Shift_Del p.K73Rfs*19 0.16 TCGA-CG-5728-01 2 63540407 63540407 G A WDPCP Silent p.D596D 0.16 TCGA-CG-5728-01 2 63824675 63824675 A C MDH1 Silent p.A132A 0.12 TCGA-CG-5728-01 2 64111165 64111166 - A UGP2 Frame_Shift_Ins p.I174Nfs*24 0.12 TCGA-CG-5728-01 2 64174549 64174549 T - VPS54 Frame_Shift_Del p.M405Wfs*13 0.09 TCGA-CG-5728-01 2 64322001 64322001 A - PELI1 Frame_Shift_Del p.F364Lfs*54 0.20 TCGA-CG-5728-01 2 69045039 69045039 A G ARHGAP25 Missense_Mutation p.N306D 0.06 deleterious(0) probably_damaging(0.953) TCGA-CG-5728-01 2 69046341 69046341 C - ARHGAP25 Frame_Shift_Del p.P365Lfs*17 0.20 TCGA-CG-5728-01 2 69207960 69207960 T - GKN1 3'UTR 0.15 TCGA-CG-5728-01 2 71361201 71361203 GAA - MPHOSPH10 In_Frame_Del p.E300del 0.10 TCGA-CG-5728-01 2 72362528 72362528 G A CYP26B1 Silent p.S150S 0.16 TCGA-CG-5728-01 2 73518651 73518651 C T EGR4 Silent p.A568A 0.35 TCGA-CG-5728-01 2 74043913 74043913 C T C2orf78 Missense_Mutation p.R855C 0.14 deleterious(0) possibly_damaging(0.854) TCGA-CG-5728-01 2 80136908 80136908 C T CTNNA2 Silent p.S347S 0.15 TCGA-CG-5728-01 2 85827121 85827123 GCA - TMEM150A In_Frame_Del p.L96del 0.24 TCGA-CG-5728-01 2 85890587 85890587 C T SFTPB Missense_Mutation p.R307Q 0.22 tolerated(1) benign(0) TCGA-CG-5728-01 2 85894899 85894899 G C SFTPB Missense_Mutation p.A45G 0.22 deleterious(0.01) possibly_damaging(0.61) TCGA-CG-5728-01 2 88882965 88882966 - T EIF2AK3 Frame_Shift_Ins p.N582Kfs*11 0.23 TCGA-CG-5728-01 2 89084303 89084303 T C ANKRD36BP2 RNA 0.10 TCGA-CG-5728-01 2 9491025 9491025 G A ASAP2 Splice_Site p.X371_splice 0.26 TCGA-CG-5728-01 2 95539788 95539788 C T TEKT4 Silent p.C216C 0.18 TCGA-CG-5728-01 2 96944058 96944058 G A SNRNP200 Nonsense_Mutation p.R1843* 0.19 TCGA-CG-5728-01 2 97261292 97261292 C A KANSL3 3'UTR 0.17 TCGA-CG-5728-01 2 97365388 97365388 T C FER1L5 RNA 0.07 TCGA-CG-5728-01 2 97505471 97505471 C T ANKRD23 Missense_Mutation p.R272Q 0.22 tolerated(0.37) benign(0.005) TCGA-CG-5728-01 3 10049076 10049077 TG - AC022007.5 RNA 0.20 TCGA-CG-5728-01 3 100964765 100964765 G T IMPG2 Missense_Mutation p.S475Y 0.20 deleterious(0.02) possibly_damaging(0.867) TCGA-CG-5728-01 3 101520160 101520160 C T NXPE3 Nonsense_Mutation p.R59* 0.06 TCGA-CG-5728-01 3 101540650 101540650 G A NXPE3 Missense_Mutation p.R511K 0.31 tolerated(0.84) benign(0) TCGA-CG-5728-01 3 111766741 111766741 G A TMPRSS7 Missense_Mutation p.A170T 0.18 tolerated(0.13) possibly_damaging(0.734) TCGA-CG-5728-01 3 112647931 112647931 A - CD200R1 Intron 0.20 TCGA-CG-5728-01 3 113375850 113375850 T C KIAA2018 Missense_Mutation p.Q1560R 0.16 benign(0.354) TCGA-CG-5728-01 3 113497599 113497599 T A ATP6V1A 5'UTR 0.16 TCGA-CG-5728-01 3 119120974 119120974 G A ARHGAP31 Missense_Mutation p.D459N 0.08 tolerated(0.2) possibly_damaging(0.856) TCGA-CG-5728-01 3 120469477 120469477 T G GTF2E1 Nonsense_Mutation p.Y26* 0.05 TCGA-CG-5728-01 3 121179017 121179017 A G POLQ Silent p.H2344H 0.20 TCGA-CG-5728-01 3 121206610 121206610 C T POLQ Missense_Mutation p.R1723H 0.11 tolerated(0.54) benign(0.001) TCGA-CG-5728-01 3 121411357 121411357 T C GOLGB1 Missense_Mutation p.D2285G 0.05 benign(0.381) TCGA-CG-5728-01 3 122345823 122345823 A - PARP15 Frame_Shift_Del p.R463Efs*7 0.16 TCGA-CG-5728-01 3 122512524 122512524 C T HSPBAP1 Missense_Mutation p.A2T 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.538) TCGA-CG-5728-01 3 122646807 122646807 G A SEMA5B Missense_Mutation p.A281V 0.09 tolerated(0.07) possibly_damaging(0.64) TCGA-CG-5728-01 3 12421297 12421297 C A PPARG Silent p.S59S 0.21 TCGA-CG-5728-01 3 124438126 124438126 C T RP11-71H17.7 5'Flank 0.23 TCGA-CG-5728-01 3 124578267 124578267 G T ITGB5 Silent p.T61T 0.21 TCGA-CG-5728-01 3 125787084 125787084 G A SLC41A3 5'UTR 0.17 TCGA-CG-5728-01 3 126185161 126185161 G A ZXDC Silent p.C426C 0.20 TCGA-CG-5728-01 3 126730890 126730890 G A PLXNA1 Silent p.Q734Q 0.23 TCGA-CG-5728-01 3 127396605 127396605 C - ABTB1 Frame_Shift_Del p.P318Qfs*36 0.14 TCGA-CG-5728-01 3 127642914 127642914 C T KBTBD12 Missense_Mutation p.A337V 0.17 deleterious(0.03) benign(0.303) TCGA-CG-5728-01 3 128127069 128127069 C T EEFSEC Silent p.F586F 0.23 TCGA-CG-5728-01 3 12856772 12856772 T C CAND2 Missense_Mutation p.V380A 0.19 tolerated(1) benign(0) TCGA-CG-5728-01 3 129290521 129290521 T C PLXND1 Missense_Mutation p.S1082G 0.30 tolerated(0.09) possibly_damaging(0.781) TCGA-CG-5728-01 3 129370183 129370183 A - TMCC1 3'UTR 0.20 TCGA-CG-5728-01 3 130744175 130744175 C T ASTE1 Intron 0.20 TCGA-CG-5728-01 3 132324009 132324009 C A ACAD11 Missense_Mutation p.E485D 0.13 tolerated(0.14) benign(0.001) TCGA-CG-5728-01 3 140251228 140251228 C T CLSTN2 Silent p.Y469Y 0.17 TCGA-CG-5728-01 3 142840665 142840665 C T CHST2 Missense_Mutation p.A336V 0.15 deleterious(0) probably_damaging(0.995) TCGA-CG-5728-01 3 148714687 148714687 T C GYG1 Silent p.F159F 0.12 TCGA-CG-5728-01 3 149220541 149220543 CTT - TM4SF4 3'UTR 0.20 TCGA-CG-5728-01 3 150387141 150387141 G T FAM194A Missense_Mutation p.L481I 0.20 tolerated(0.1) probably_damaging(0.911) TCGA-CG-5728-01 3 153839836 153839836 C T ARHGEF26 Missense_Mutation p.R19W 0.24 tolerated_low_confidence(0.07) benign(0.006) TCGA-CG-5728-01 3 155282736 155282736 C T PLCH1 Missense_Mutation p.R334Q 0.24 tolerated(0.41) probably_damaging(0.992) TCGA-CG-5728-01 3 158537447 158537447 C T MFSD1 Missense_Mutation p.T270M 0.16 deleterious(0.04) benign(0.165) TCGA-CG-5728-01 3 164735854 164735854 A G SI Missense_Mutation p.Y1142H 0.22 tolerated(0.07) probably_damaging(0.986) TCGA-CG-5728-01 3 167272480 167272480 C A WDR49 Missense_Mutation p.G253V 0.11 deleterious(0) probably_damaging(0.957) TCGA-CG-5728-01 3 169642898 169642898 A G SAMD7 Silent p.E88E 0.24 TCGA-CG-5728-01 3 169802469 169802469 A - GPR160 Frame_Shift_Del p.I239Yfs*22 0.19 TCGA-CG-5728-01 3 170857333 170857333 G A TNIK Nonsense_Mutation p.R449* 0.18 TCGA-CG-5728-01 3 17255753 17255753 A - TBC1D5 Frame_Shift_Del p.F588Lfs*23 0.21 TCGA-CG-5728-01 3 178916876 178916876 G A PIK3CA Missense_Mutation p.R88Q 0.12 tolerated(0.06) probably_damaging(0.998) TCGA-CG-5728-01 3 183017896 183017896 C T MCF2L2 Missense_Mutation p.R401Q 0.30 tolerated(0.18) benign(0.006) TCGA-CG-5728-01 3 189028328 189028328 G T TPRG1 Missense_Mutation p.K211N 0.14 deleterious(0.05) benign(0.425) TCGA-CG-5728-01 3 190341140 190341140 A - IL1RAP Frame_Shift_Del p.N239Mfs*6 0.19 TCGA-CG-5728-01 3 190345194 190345194 A - IL1RAP Frame_Shift_Del p.K288Nfs*15 0.13 TCGA-CG-5728-01 3 194118298 194118298 G A GP5 Silent p.F238F 0.17 TCGA-CG-5728-01 3 195022892 195022892 C G ACAP2 Missense_Mutation p.K376N 0.25 tolerated(0.08) benign(0.002) TCGA-CG-5728-01 3 195473937 195473937 T C MUC4 3'UTR 0.38 TCGA-CG-5728-01 3 195497165 195497165 G A MUC4 Silent p.N4440N 0.31 TCGA-CG-5728-01 3 19575324 19575324 G A KCNH8 Silent p.T1019T 0.05 TCGA-CG-5728-01 3 197547200 197547200 T C LRCH3 Missense_Mutation p.V180A 0.17 deleterious(0.01) benign(0.041) TCGA-CG-5728-01 3 25650830 25650830 T C TOP2B Missense_Mutation p.R1308G 0.17 tolerated(0.09) benign(0.149) TCGA-CG-5728-01 3 25668765 25668765 T A TOP2B Missense_Mutation p.K638N 0.21 tolerated(0.06) benign(0.141) TCGA-CG-5728-01 3 29938929 29938929 C T RBMS3 Missense_Mutation p.T284M 0.15 deleterious(0.04) probably_damaging(0.999) TCGA-CG-5728-01 3 31703433 31703434 TC - OSBPL10 3'UTR 0.20 TCGA-CG-5728-01 3 32932817 32932817 G A TRIM71 Silent p.A707A 0.21 TCGA-CG-5728-01 3 33543196 33543196 G A CLASP2 Missense_Mutation p.A1469V 0.14 deleterious(0.04) benign(0.422) TCGA-CG-5728-01 3 33729800 33729800 C T CLASP2 Missense_Mutation p.V147M 0.20 deleterious(0) possibly_damaging(0.88) TCGA-CG-5728-01 3 36874710 36874710 C T TRANK1 Missense_Mutation p.V2078M 0.20 deleterious(0.03) possibly_damaging(0.823) TCGA-CG-5728-01 3 36897192 36897192 A G TRANK1 Missense_Mutation p.Y1297H 0.19 deleterious(0.02) benign(0.151) TCGA-CG-5728-01 3 37162993 37162993 C T LRRFIP2 Missense_Mutation p.G107D 0.05 deleterious(0.03) possibly_damaging(0.493) TCGA-CG-5728-01 3 37292888 37292888 G A GOLGA4 Silent p.A25A 0.10 TCGA-CG-5728-01 3 38037234 38037234 A G VILL Missense_Mutation p.R116G 0.16 deleterious(0) possibly_damaging(0.811) TCGA-CG-5728-01 3 38601896 38601896 G A SCN5A Silent p.G1329G 0.12 TCGA-CG-5728-01 3 38608015 38608015 G A SCN5A Missense_Mutation p.A1242V 0.20 deleterious(0.03) possibly_damaging(0.566) TCGA-CG-5728-01 3 38620974 38620974 G C SCN5A Missense_Mutation p.P1081A 0.27 tolerated(0.18) benign(0.043) TCGA-CG-5728-01 3 38639229 38639229 G A SCN5A Silent p.V751V 0.23 TCGA-CG-5728-01 3 38739639 38739639 T C SCN10A Missense_Mutation p.D1691G 0.21 deleterious(0) benign(0.217) TCGA-CG-5728-01 3 39307753 39307753 G A CX3CR1 Missense_Mutation p.T115I 0.06 deleterious(0) probably_damaging(0.982) TCGA-CG-5728-01 3 40251387 40251387 C T MYRIP Missense_Mutation p.R570W 0.21 deleterious(0.01) benign(0.443) TCGA-CG-5728-01 3 42678379 42678379 A T NKTR Missense_Mutation p.S395C 0.15 deleterious_low_confidence(0) unknown(0) TCGA-CG-5728-01 3 42740589 42740589 C T HHATL Missense_Mutation p.V75I 0.20 tolerated(0.39) benign(0.001) TCGA-CG-5728-01 3 439979 439979 C T CHL1 Missense_Mutation p.P1055L 0.05 deleterious(0) possibly_damaging(0.704) TCGA-CG-5728-01 3 44612251 44612251 C A ZKSCAN7 Missense_Mutation p.P550H 0.20 deleterious(0) probably_damaging(0.991) TCGA-CG-5728-01 3 46008705 46008705 G A FYCO1 Silent p.G707G 0.08 TCGA-CG-5728-01 3 46482949 46482949 C T LTF Missense_Mutation p.V561I 0.26 deleterious(0.01) probably_damaging(0.947) TCGA-CG-5728-01 3 47462130 47462130 A T SCAP Missense_Mutation p.S493T 0.28 tolerated(0.06) benign(0.179) TCGA-CG-5728-01 3 47467488 47467488 C T SCAP Silent p.T303T 0.12 TCGA-CG-5728-01 3 47619165 47619165 G A CSPG5 Silent p.S117S 0.31 TCGA-CG-5728-01 3 48689915 48689915 G - CELSR3 Frame_Shift_Del p.G1903Afs*36 0.21 TCGA-CG-5728-01 3 48698284 48698284 A G CELSR3 Missense_Mutation p.I595T 0.12 deleterious(0) possibly_damaging(0.794) TCGA-CG-5728-01 3 49042564 49042565 - T P4HTM Frame_Shift_Ins p.P387Sfs*57 0.16 TCGA-CG-5728-01 3 49201445 49201445 C T CCDC71 Missense_Mutation p.R66H 0.22 deleterious(0) probably_damaging(0.999) TCGA-CG-5728-01 3 49212181 49212181 G A KLHDC8B Missense_Mutation p.R183H 0.21 deleterious(0) probably_damaging(0.999) TCGA-CG-5728-01 3 49332009 49332009 C T USP4 Missense_Mutation p.V572M 0.15 tolerated(0.11) benign(0.009) TCGA-CG-5728-01 3 49548116 49548116 T C DAG1 Missense_Mutation p.M50T 0.24 deleterious(0.03) benign(0.434) TCGA-CG-5728-01 3 49694496 49694496 C - BSN Frame_Shift_Del p.T2506Hfs*63 0.35 TCGA-CG-5728-01 3 49713595 49713595 C T APEH Silent p.D183D 0.21 TCGA-CG-5728-01 3 49723549 49723549 G A MST1 Missense_Mutation p.R365C 0.15 deleterious(0) probably_damaging(0.999) TCGA-CG-5728-01 3 49936356 49936356 C T MST1R Missense_Mutation p.V498M 0.04 deleterious(0.02) possibly_damaging(0.532) TCGA-CG-5728-01 3 50155809 50155809 G A RBM5 Missense_Mutation p.A790T 0.08 tolerated(0.14) benign(0.026) TCGA-CG-5728-01 3 51458110 51458110 G T VPRBP Silent p.R343R 0.24 TCGA-CG-5728-01 3 52259650 52259650 G T TLR9 5'UTR 0.25 TCGA-CG-5728-01 3 52551965 52551965 C T STAB1 Silent p.C1569C 0.20 TCGA-CG-5728-01 3 52558385 52558385 T C STAB1 3'UTR 0.22 TCGA-CG-5728-01 3 52610623 52610623 T - PBRM1 Frame_Shift_Del p.M1184Cfs*9 0.12 TCGA-CG-5728-01 3 58414314 58414314 T C PDHB Missense_Mutation p.M274V 0.22 deleterious(0) benign(0.312) TCGA-CG-5728-01 3 58619877 58619877 C T FAM3D 3'UTR 0.16 TCGA-CG-5728-01 3 62189498 62189498 C - PTPRG Frame_Shift_Del p.T679Pfs*48 0.24 TCGA-CG-5728-01 3 62423862 62423862 C T CADPS Missense_Mutation p.A1232T 0.08 tolerated(0.65) benign(0.177) TCGA-CG-5728-01 3 64133159 64133159 C T PRICKLE2 Missense_Mutation p.R336H 0.22 tolerated(0.15) benign(0.052) TCGA-CG-5728-01 3 64592738 64592738 T A ADAMTS9 Silent p.G1124G 0.20 TCGA-CG-5728-01 3 89259309 89259309 T C EPHA3 Silent p.S151S 0.18 TCGA-CG-5728-01 3 89499363 89499363 C - EPHA3 Frame_Shift_Del p.M847Wfs*10 0.15 TCGA-CG-5728-01 3 89528690 89528690 C T EPHA3 3'UTR 0.15 TCGA-CG-5728-01 3 93755447 93755447 A - ARL13B Frame_Shift_Del p.G182Afs*16 0.13 TCGA-CG-5728-01 3 97711889 97711889 A T GABRR3 3'Flank 0.30 TCGA-CG-5728-01 3 98251024 98251024 G - GPR15 Frame_Shift_Del p.N51Tfs*17 0.19 TCGA-CG-5728-01 3 9839372 9839372 C T ARPC4-TTLL3 Silent p.A11A 0.17 TCGA-CG-5728-01 3 9859427 9859428 - A TTLL3 Frame_Shift_Ins p.A284Sfs*22 0.21 TCGA-CG-5728-01 4 1017838 1017838 G A FGFRL1 Missense_Mutation p.V223M 0.29 deleterious(0) probably_damaging(0.999) TCGA-CG-5728-01 4 106863655 106863655 A G NPNT Missense_Mutation p.T349A 0.04 tolerated(0.21) benign(0.002) TCGA-CG-5728-01 4 109675790 109675791 - T ETNPPL Frame_Shift_Ins p.E163Rfs*17 0.15 TCGA-CG-5728-01 4 111397859 111397859 G A ENPEP Missense_Mutation p.V97I 0.21 tolerated(1) benign(0.005) TCGA-CG-5728-01 4 113352134 113352135 - A ALPK1 Frame_Shift_Ins p.N479Kfs*2 0.22 TCGA-CG-5728-01 4 114294543 114294543 G - ANK2 Frame_Shift_Del p.D3934Mfs*7 0.18 TCGA-CG-5728-01 4 118975701 118975701 A G NDST3 Silent p.K212K 0.19 TCGA-CG-5728-01 4 119237471 119237471 G A PRSS12 Silent p.V386V 0.18 TCGA-CG-5728-01 4 122731160 122731160 G A EXOSC9 Missense_Mutation p.R215H 0.16 deleterious(0.01) possibly_damaging(0.715) TCGA-CG-5728-01 4 123171679 123171679 G A KIAA1109 Missense_Mutation p.R1958Q 0.15 benign(0.002) TCGA-CG-5728-01 4 126328095 126328095 G A FAT4 Missense_Mutation p.D1790N 0.24 probably_damaging(1) TCGA-CG-5728-01 4 134072881 134072881 G A PCDH10 Missense_Mutation p.R529H 0.24 tolerated(0.05) probably_damaging(0.999) TCGA-CG-5728-01 4 134111428 134111428 G T PCDH10 3'UTR 0.12 TCGA-CG-5728-01 4 140275179 140275179 G T NAA15 Splice_Site p.X339_splice 0.24 TCGA-CG-5728-01 4 144469153 144469155 GAA - SMARCA5 In_Frame_Del p.E951del 0.12 TCGA-CG-5728-01 4 145658978 145658978 A - HHIP Frame_Shift_Del p.G660Dfs*17 0.15 TCGA-CG-5728-01 4 148984398 148984398 G A ARHGAP10 Silent p.S709S 0.21 TCGA-CG-5728-01 4 15067858 15067858 T - CPEB2 Frame_Shift_Del p.C989Vfs*31 0.18 TCGA-CG-5728-01 4 151169505 151169505 G A DCLK2 Missense_Mutation p.A659T 0.05 deleterious(0) probably_damaging(0.969) TCGA-CG-5728-01 4 151504961 151504961 C - MAB21L2 Frame_Shift_Del p.H261Tfs*14 0.15 TCGA-CG-5728-01 4 153244114 153244115 - T FBXW7 Frame_Shift_Ins p.L682Afs*12 0.22 TCGA-CG-5728-01 4 153691221 153691221 A G TIGD4 Silent p.S312S 0.09 TCGA-CG-5728-01 4 155488796 155488797 TA - FGB Frame_Shift_Del p.I183Rfs*2 0.20 TCGA-CG-5728-01 4 155880 155880 C A ZNF718 RNA 0.20 TCGA-CG-5728-01 4 158224771 158224771 C A GRIA2 Silent p.T99T 0.07 TCGA-CG-5728-01 4 16900030 16900030 G A LDB2 Nonsense_Mutation p.Q27* 0.06 TCGA-CG-5728-01 4 183714567 183714567 T - TENM3 Frame_Shift_Del p.Y2250Mfs*4 0.19 TCGA-CG-5728-01 4 184166576 184166576 A - WWC2 Frame_Shift_Del p.M206Cfs*17 0.23 TCGA-CG-5728-01 4 185550325 185550325 C T CASP3 3'UTR 0.06 TCGA-CG-5728-01 4 185599425 185599425 C A PRIMPOL Nonsense_Mutation p.S295* 0.18 TCGA-CG-5728-01 4 187195464 187195464 A - F11 Intron 0.20 TCGA-CG-5728-01 4 1962797 1962797 C T WHSC1 Silent p.I1097I 0.21 TCGA-CG-5728-01 4 20620460 20620460 C G SLIT2 Missense_Mutation p.T1473R 0.20 deleterious(0) possibly_damaging(0.625) TCGA-CG-5728-01 4 22415322 22415322 C T GPR125 Missense_Mutation p.R642H 0.20 deleterious(0.02) benign(0.097) TCGA-CG-5728-01 4 23830129 23830129 G A PPARGC1A Silent p.N217N 0.21 TCGA-CG-5728-01 4 27024705 27024706 - G STIM2 3'UTR 0.22 TCGA-CG-5728-01 4 2899982 2899982 T C ADD1 Silent p.H271H 0.05 TCGA-CG-5728-01 4 2952779 2952780 - A NOP14 Intron 0.12 TCGA-CG-5728-01 4 3388122 3388123 TC - RGS12 Intron 0.12 TCGA-CG-5728-01 4 38691476 38691476 C - KLF3 Frame_Shift_Del p.P226Rfs*52 0.25 TCGA-CG-5728-01 4 38830853 38830853 A - TLR6 Frame_Shift_Del p.L81* 0.23 TCGA-CG-5728-01 4 38910256 38910256 T C FAM114A1 Missense_Mutation p.I234T 0.18 deleterious(0) probably_damaging(0.999) TCGA-CG-5728-01 4 38910296 38910296 G A FAM114A1 Silent p.P247P 0.06 TCGA-CG-5728-01 4 39104951 39104951 A G KLHL5 Missense_Mutation p.T495A 0.12 tolerated(0.82) possibly_damaging(0.507) TCGA-CG-5728-01 4 39512462 39512462 G T UGDH Missense_Mutation p.T95N 0.21 tolerated(0.05) benign(0.013) TCGA-CG-5728-01 4 41687824 41687824 C T LIMCH1 Silent p.I971I 0.18 TCGA-CG-5728-01 4 41691639 41691639 T C LIMCH1 Missense_Mutation p.I1037T 0.15 deleterious(0) probably_damaging(0.948) TCGA-CG-5728-01 4 41984149 41984149 G T DCAF4L1 Missense_Mutation p.V114L 0.17 deleterious(0.01) benign(0.423) TCGA-CG-5728-01 4 48862931 48862931 A - OCIAD1 3'UTR 0.16 TCGA-CG-5728-01 4 5016813 5016813 C T CYTL1 3'UTR 0.31 TCGA-CG-5728-01 4 54244047 54244047 C T FIP1L1 Silent p.S14S 0.33 TCGA-CG-5728-01 4 54967794 54967794 C T GSX2 Missense_Mutation p.T207M 0.16 deleterious(0) probably_damaging(0.999) TCGA-CG-5728-01 4 55569973 55569973 G A KIT Silent p.A280A 0.20 TCGA-CG-5728-01 4 56277913 56277913 T - TMEM165 Frame_Shift_Del p.F115Lfs*2 0.31 TCGA-CG-5728-01 4 5633548 5633549 - T EVC2 Frame_Shift_Ins p.M561Nfs*8 0.23 TCGA-CG-5728-01 4 56765964 56765965 - A EXOC1 Frame_Shift_Ins p.E754Rfs*23 0.21 TCGA-CG-5728-01 4 5785435 5785435 C T EVC Missense_Mutation p.R574C 0.26 tolerated(0.06) benign(0.041) TCGA-CG-5728-01 4 5806514 5806514 C T EVC Missense_Mutation p.S836L 0.15 tolerated(0.37) benign(0.003) TCGA-CG-5728-01 4 5982061 5982061 C T C4orf50 Missense_Mutation p.R477Q 0.18 tolerated(1) benign(0) TCGA-CG-5728-01 4 6711156 6711156 G C MRFAP1L1 Missense_Mutation p.I67M 0.15 tolerated(0.19) benign(0.014) TCGA-CG-5728-01 4 6864819 6864819 T A KIAA0232 Missense_Mutation p.S904T 0.11 deleterious(0.05) benign(0.234) TCGA-CG-5728-01 4 68812182 68812182 T C TMPRSS11A Missense_Mutation p.H40R 0.22 deleterious(0.03) benign(0.022) TCGA-CG-5728-01 4 70719960 70719960 G A SULT1E1 Missense_Mutation p.A115V 0.10 tolerated(0.19) benign(0.005) TCGA-CG-5728-01 4 71472342 71472342 C T AMBN Silent p.T413T 0.05 TCGA-CG-5728-01 4 72338444 72338444 C T SLC4A4 Missense_Mutation p.R554C 0.19 deleterious(0) probably_damaging(1) TCGA-CG-5728-01 4 76836121 76836121 G A NAAA Missense_Mutation p.T339M 0.16 deleterious(0) probably_damaging(0.991) TCGA-CG-5728-01 4 8021936 8021937 - T ABLIM2 Frame_Shift_Ins p.H454Qfs*10 0.24 TCGA-CG-5728-01 4 80329115 80329115 A G GK2 Silent p.I80I 0.19 TCGA-CG-5728-01 4 81123201 81123201 C T PRDM8 Silent p.G195G 0.21 TCGA-CG-5728-01 4 82355838 82355838 A G RASGEF1B Silent p.N385N 0.26 TCGA-CG-5728-01 4 8411994 8411994 G A ACOX3 Missense_Mutation p.A211V 0.28 deleterious(0.02) probably_damaging(0.98) TCGA-CG-5728-01 4 844859 844860 TT - GAK Frame_Shift_Del p.K1174Sfs*3 0.21 TCGA-CG-5728-01 4 85609395 85609395 G A WDFY3 Silent p.T3129T 0.19 TCGA-CG-5728-01 4 85722917 85722917 C T WDFY3 Missense_Mutation p.R903Q 0.24 tolerated(0.68) benign(0.026) TCGA-CG-5728-01 4 87808959 87808959 A G C4orf36 Missense_Mutation p.L103P 0.20 deleterious(0) probably_damaging(0.955) TCGA-CG-5728-01 4 87968255 87968255 G T AFF1 Nonsense_Mutation p.G190* 0.22 TCGA-CG-5728-01 4 88533595 88533595 C A DSPP Missense_Mutation p.A86E 0.16 probably_damaging(0.93) TCGA-CG-5728-01 4 90830464 90830464 A G MMRN1 Missense_Mutation p.T221A 0.16 deleterious(0.04) possibly_damaging(0.832) TCGA-CG-5728-01 4 95199819 95199819 C T SMARCAD1 Missense_Mutation p.S744L 0.18 deleterious(0.03) benign(0.248) TCGA-CG-5728-01 4 99962266 99962266 G A METAP1 Missense_Mutation p.A169T 0.15 deleterious(0.02) benign(0.042) TCGA-CG-5728-01 5 102442607 102442607 T - GIN1 Frame_Shift_Del p.K49Sfs*15 0.15 TCGA-CG-5728-01 5 10264815 10264815 C T CCT5 Nonsense_Mutation p.Q516* 0.18 TCGA-CG-5728-01 5 110409325 110409325 A G TSLP Silent p.P111P 0.13 TCGA-CG-5728-01 5 118970280 118970280 G A FAM170A Silent p.E279E 0.22 TCGA-CG-5728-01 5 121309939 121309939 C T SRFBP1 Nonsense_Mutation p.R29* 0.13 TCGA-CG-5728-01 5 121488306 121488306 C T ZNF474 Silent p.G207G 0.14 TCGA-CG-5728-01 5 127728848 127728848 C T FBN2 Missense_Mutation p.G482E 0.16 tolerated(0.09) possibly_damaging(0.53) TCGA-CG-5728-01 5 130782332 130782332 T - RAPGEF6 Frame_Shift_Del p.R1097Gfs*23 0.20 TCGA-CG-5728-01 5 131329853 131329854 - A ACSL6 Frame_Shift_Ins p.R48Pfs*65 0.26 TCGA-CG-5728-01 5 131726528 131726528 G A SLC22A5 Missense_Mutation p.R400H 0.19 tolerated(0.05) probably_damaging(0.998) TCGA-CG-5728-01 5 131729993 131729993 G T SLC22A5 3'UTR 0.05 TCGA-CG-5728-01 5 133481550 133481550 G A TCF7 Intron 0.25 TCGA-CG-5728-01 5 133541549 133541549 A G PPP2CA Intron 0.26 TCGA-CG-5728-01 5 133914938 133914938 T C JADE2 Silent p.G768G 0.24 TCGA-CG-5728-01 5 134364597 134364597 C T PITX1 Missense_Mutation p.V273I 0.21 deleterious(0.03) benign(0.036) TCGA-CG-5728-01 5 135272337 135272337 A C FBXL21 5'Flank 0.13 TCGA-CG-5728-01 5 137275855 137275855 C T FAM13B 3'UTR 0.17 TCGA-CG-5728-01 5 137715371 137715371 C T KDM3B Missense_Mutation p.R227C 0.19 deleterious(0) probably_damaging(0.993) TCGA-CG-5728-01 5 13786321 13786321 C T DNAH5 Silent p.V2929V 0.19 TCGA-CG-5728-01 5 139193918 139193918 C T PSD2 Missense_Mutation p.R329C 0.15 deleterious(0) probably_damaging(0.993) TCGA-CG-5728-01 5 139508231 139508231 C T IGIP 3'UTR 0.23 TCGA-CG-5728-01 5 140011637 140011637 C A CD14 Missense_Mutation p.R311M 0.29 deleterious(0.01) possibly_damaging(0.781) TCGA-CG-5728-01 5 140186806 140186806 C T PCDHA4 Missense_Mutation p.R12W 0.19 tolerated_low_confidence(0.08) benign(0.01) TCGA-CG-5728-01 5 140188497 140188497 C T PCDHA4 Silent p.G575G 0.17 TCGA-CG-5728-01 5 140207942 140207942 G A PCDHA6 Missense_Mutation p.R89Q 0.19 deleterious_low_confidence(0.02) possibly_damaging(0.769) TCGA-CG-5728-01 5 140208825 140208825 G A PCDHA6 Silent p.G383G 0.21 TCGA-CG-5728-01 5 140215089 140215089 T C PCDHA7 Missense_Mutation p.V374A 0.17 deleterious_low_confidence(0) possibly_damaging(0.666) TCGA-CG-5728-01 5 140249919 140249919 G A PCDHA11 Missense_Mutation p.A411T 0.20 tolerated_low_confidence(0.21) benign(0.16) TCGA-CG-5728-01 5 140306856 140306856 G A PCDHAC1 Missense_Mutation p.G127S 0.23 tolerated(1) benign(0.005) TCGA-CG-5728-01 5 140347356 140347356 G A PCDHAC2 Silent p.V335V 0.22 TCGA-CG-5728-01 5 140517107 140517107 G A PCDHB5 Silent p.S697S 0.22 TCGA-CG-5728-01 5 140531423 140531423 G A PCDHB6 Missense_Mutation p.V529M 0.25 deleterious(0) probably_damaging(0.985) TCGA-CG-5728-01 5 140531506 140531506 G A PCDHB6 Silent p.S556S 0.21 TCGA-CG-5728-01 5 140537175 140537175 C T PCDHB17 Silent p.G533G 0.24 TCGA-CG-5728-01 5 140537573 140537573 C T PCDHB17 3'UTR 0.18 TCGA-CG-5728-01 5 140559225 140559225 G A PCDHB8 Missense_Mutation p.R537H 0.14 deleterious_low_confidence(0.05) benign(0.041) TCGA-CG-5728-01 5 140579303 140579303 C T PCDHB11 5'Flank 0.20 TCGA-CG-5728-01 5 140605165 140605165 G A PCDHB14 Silent p.S696S 0.20 TCGA-CG-5728-01 5 140740782 140740782 G A PCDHGB2 Silent p.S360S 0.14 TCGA-CG-5728-01 5 140798770 140798770 C T PCDHGB7 Silent p.N448N 0.19 TCGA-CG-5728-01 5 140807322 140807322 A G PCDHGB6 Intron 0.22 TCGA-CG-5728-01 5 141014481 141014481 G A HDAC3 Missense_Mutation p.R60C 0.13 deleterious(0) probably_damaging(0.977) TCGA-CG-5728-01 5 141033493 141033493 C A ARAP3 3'UTR 0.18 TCGA-CG-5728-01 5 141051787 141051787 G A ARAP3 Silent p.Y489Y 0.06 TCGA-CG-5728-01 5 141694062 141694062 C A SPRY4 Missense_Mutation p.Q227H 0.22 deleterious(0) possibly_damaging(0.735) TCGA-CG-5728-01 5 14419959 14419959 C T TRIO Nonsense_Mutation p.R1678* 0.22 TCGA-CG-5728-01 5 14508749 14508749 C T TRIO 3'UTR 0.38 TCGA-CG-5728-01 5 146781177 146781177 C T DPYSL3 Silent p.A412A 0.35 TCGA-CG-5728-01 5 147481387 147481387 T - SPINK5 Frame_Shift_Del p.C451Afs*53 0.21 TCGA-CG-5728-01 5 147805103 147805103 G A FBXO38 Missense_Mutation p.R586H 0.17 tolerated_low_confidence(0.2) probably_damaging(0.993) TCGA-CG-5728-01 5 148406585 148406585 G A SH3TC2 Nonsense_Mutation p.R904* 0.22 TCGA-CG-5728-01 5 149006814 149006814 G A ARHGEF37 Missense_Mutation p.R547H 0.22 deleterious(0) probably_damaging(1) TCGA-CG-5728-01 5 149453020 149453020 A G CSF1R Missense_Mutation p.L309P 0.22 deleterious(0.03) possibly_damaging(0.636) TCGA-CG-5728-01 5 149460476 149460476 G - CSF1R Frame_Shift_Del p.P54Hfs*58 0.16 TCGA-CG-5728-01 5 149677808 149677808 G A ARSI Missense_Mutation p.R227C 0.19 deleterious(0) possibly_damaging(0.773) TCGA-CG-5728-01 5 150028880 150028881 - C SYNPO Frame_Shift_Ins p.K594Qfs*55 0.17 TCGA-CG-5728-01 5 152873596 152873596 T C GRIA1 Missense_Mutation p.I74T 0.08 tolerated(0.81) benign(0.031) TCGA-CG-5728-01 5 153085355 153085355 G A GRIA1 Missense_Mutation p.M527I 0.20 deleterious(0) probably_damaging(0.989) TCGA-CG-5728-01 5 153144175 153144175 A G GRIA1 Missense_Mutation p.T679A 0.13 deleterious(0) possibly_damaging(0.893) TCGA-CG-5728-01 5 153382463 153382465 CTT - FAM114A2 In_Frame_Del p.E353del 0.17 TCGA-CG-5728-01 5 154065380 154065383 TTTA - MIR1303 RNA 0.26 TCGA-CG-5728-01 5 154396385 154396385 T C KIF4B Missense_Mutation p.I989T 0.06 tolerated(0.57) benign(0.002) TCGA-CG-5728-01 5 15500671 15500671 G - FBXL7 5'UTR 0.21 TCGA-CG-5728-01 5 157214796 157214796 A G CLINT1 Missense_Mutation p.M597T 0.13 tolerated(0.14) benign(0.159) TCGA-CG-5728-01 5 167674458 167674458 A G TENM2 Missense_Mutation p.M2172V 0.25 tolerated(0.42) possibly_damaging(0.54) TCGA-CG-5728-01 5 170632540 170632540 G A RANBP17 Missense_Mutation p.G719R 0.25 deleterious(0) probably_damaging(0.999) TCGA-CG-5728-01 5 17275415 17275415 G A BASP1 Silent p.A30A 0.27 TCGA-CG-5728-01 5 176295907 176295907 C T UNC5A Silent p.C221C 0.12 TCGA-CG-5728-01 5 177548793 177548793 C T N4BP3 Nonsense_Mutation p.R476* 0.19 TCGA-CG-5728-01 5 178408747 178408747 G A GRM6 Nonsense_Mutation p.Q849* 0.17 TCGA-CG-5728-01 5 178566909 178566909 C T ADAMTS2 Missense_Mutation p.R586H 0.29 deleterious(0) probably_damaging(1) TCGA-CG-5728-01 5 179201712 179201712 C A MAML1 Missense_Mutation p.P962H 0.20 tolerated(0.09) possibly_damaging(0.77) TCGA-CG-5728-01 5 179264901 179264901 G A SQSTM1 3'UTR 0.17 TCGA-CG-5728-01 5 179991555 179991555 A G CNOT6 Missense_Mutation p.N151S 0.16 tolerated(0.8) benign(0.001) TCGA-CG-5728-01 5 1879766 1879766 C T IRX4 Silent p.A196A 0.21 TCGA-CG-5728-01 5 19591227 19591227 A G CDH18 Missense_Mutation p.M313T 0.16 tolerated(0.72) benign(0.008) TCGA-CG-5728-01 5 21842351 21842351 G A CDH12 Nonsense_Mutation p.Q245* 0.19 TCGA-CG-5728-01 5 23527974 23527974 C T PRDM9 3'UTR 0.24 TCGA-CG-5728-01 5 24487730 24487730 T C CDH10 3'UTR 0.23 TCGA-CG-5728-01 5 31526774 31526774 G A DROSHA Missense_Mutation p.A89V 0.35 tolerated_low_confidence(0.13) benign(0.001) TCGA-CG-5728-01 5 32058117 32058117 C T PDZD2 Missense_Mutation p.A703V 0.16 tolerated(0.82) benign(0.002) TCGA-CG-5728-01 5 33989221 33989221 T C AMACR Missense_Mutation p.N376D 0.21 tolerated(0.15) benign(0.003) TCGA-CG-5728-01 5 34033499 34033499 G A C1QTNF3 Silent p.G160G 0.31 TCGA-CG-5728-01 5 37000602 37000602 T C NIPBL Silent p.G1144G 0.15 TCGA-CG-5728-01 5 37350336 37350336 C T NUP155 Missense_Mutation p.R252K 0.04 tolerated(0.09) possibly_damaging(0.759) TCGA-CG-5728-01 5 37815867 37815867 T C GDNF Silent p.V191V 0.05 TCGA-CG-5728-01 5 41149542 41149542 G A C6 Silent p.N808N 0.23 TCGA-CG-5728-01 5 424025 424025 C T AHRR Missense_Mutation p.S218L 0.13 deleterious(0) possibly_damaging(0.903) TCGA-CG-5728-01 5 52394418 52394418 A - MOCS2 3'UTR 0.18 TCGA-CG-5728-01 5 56527097 56527097 C T GPBP1 Silent p.T127T 0.19 TCGA-CG-5728-01 5 56546783 56546783 T C GPBP1 Silent p.D332D 0.17 TCGA-CG-5728-01 5 63256803 63256803 C T HTR1A Silent p.P248P 0.12 TCGA-CG-5728-01 5 64769520 64769520 T - ADAMTS6 5'UTR 0.20 TCGA-CG-5728-01 5 64910016 64910016 T A TRIM23 Missense_Mutation p.N92I 0.13 deleterious(0) probably_damaging(0.998) TCGA-CG-5728-01 5 65320250 65320250 T G ERBB2IP Missense_Mutation p.N263K 0.07 deleterious(0) probably_damaging(1) TCGA-CG-5728-01 5 66448592 66448592 G A MAST4 Silent p.P1141P 0.21 TCGA-CG-5728-01 5 66478727 66478727 A - CD180 Frame_Shift_Del p.F648Lfs*41 0.14 TCGA-CG-5728-01 5 71491093 71491093 G A MAP1B Silent p.T637T 0.20 TCGA-CG-5728-01 5 73163798 73163798 A T ARHGEF28 Silent p.G750G 0.16 TCGA-CG-5728-01 5 76344774 76344774 G C AGGF1 Missense_Mutation p.E443Q 0.23 tolerated(0.18) benign(0.111) TCGA-CG-5728-01 5 77717683 77717683 T C SCAMP1 Silent p.D177D 0.14 TCGA-CG-5728-01 5 79031505 79031505 T C CMYA5 Missense_Mutation p.V2306A 0.16 benign(0.023) TCGA-CG-5728-01 5 79735824 79735824 G A ZFYVE16 Missense_Mutation p.V798I 0.05 tolerated(0.67) benign(0.09) TCGA-CG-5728-01 5 82400785 82400785 T A XRCC4 Missense_Mutation p.I16K 0.06 tolerated(0.35) probably_damaging(0.979) TCGA-CG-5728-01 5 83360539 83360539 A C EDIL3 Missense_Mutation p.L311R 0.21 deleterious(0) probably_damaging(0.995) TCGA-CG-5728-01 5 89701581 89701581 T - CETN3 Frame_Shift_Del p.A64Lfs*4 0.13 TCGA-CG-5728-01 5 89924611 89924611 A G GPR98 Missense_Mutation p.T491A 0.04 possibly_damaging(0.636) TCGA-CG-5728-01 5 93386492 93386492 T G FAM172A Missense_Mutation p.N85H 0.14 deleterious(0) probably_damaging(0.972) TCGA-CG-5728-01 6 100838484 100838484 T C SIM1 Missense_Mutation p.H685R 0.18 tolerated_low_confidence(0.1) benign(0.055) TCGA-CG-5728-01 6 105198303 105198303 G T HACE1 Silent p.A752A 0.16 TCGA-CG-5728-01 6 10796519 10796519 T G MAK Missense_Mutation p.Q285H 0.24 tolerated(0.15) benign(0.152) TCGA-CG-5728-01 6 108222672 108222672 C T SEC63 Missense_Mutation p.R420H 0.13 deleterious(0) probably_damaging(0.998) TCGA-CG-5728-01 6 108985139 108985139 G A FOXO3 Missense_Mutation p.R368Q 0.13 deleterious(0.02) benign(0.087) TCGA-CG-5728-01 6 109294701 109294701 C A ARMC2 Missense_Mutation p.P863H 0.15 deleterious(0) possibly_damaging(0.642) TCGA-CG-5728-01 6 114379084 114379084 A - HS3ST5 Frame_Shift_Del p.F126Lfs*47 0.21 TCGA-CG-5728-01 6 116892728 116892728 G A RWDD1 5'UTR 0.13 TCGA-CG-5728-01 6 117884289 117884289 T C GOPC 3'UTR 0.09 TCGA-CG-5728-01 6 119345777 119345777 T - FAM184A Frame_Shift_Del p.M121* 0.15 TCGA-CG-5728-01 6 121768103 121768103 T C GJA1 Missense_Mutation p.L37P 0.13 deleterious(0) probably_damaging(1) TCGA-CG-5728-01 6 128316642 128316642 G A PTPRK Missense_Mutation p.P937S 0.10 tolerated(0.14) probably_damaging(0.98) TCGA-CG-5728-01 6 129419458 129419458 T C LAMA2 Silent p.L179L 0.19 TCGA-CG-5728-01 6 129813110 129813110 A G LAMA2 Missense_Mutation p.I2655V 0.24 tolerated(0.14) benign(0.026) TCGA-CG-5728-01 6 133035130 133035131 AT - VNN1 Frame_Shift_Del p.Y15Cfs*16 0.12 TCGA-CG-5728-01 6 13584404 13584404 C A SIRT5 Missense_Mutation p.P21H 0.21 deleterious_low_confidence(0.02) benign(0.013) TCGA-CG-5728-01 6 136913687 136913687 A G MAP3K5 Missense_Mutation p.Y982H 0.06 tolerated(0.97) benign(0.017) TCGA-CG-5728-01 6 137329811 137329811 G A IL20RA Missense_Mutation p.H217Y 0.04 tolerated(0.26) possibly_damaging(0.544) TCGA-CG-5728-01 6 138201244 138201244 C T TNFAIP3 Missense_Mutation p.A648V 0.13 tolerated(0.06) benign(0.029) TCGA-CG-5728-01 6 139487945 139487945 G A HECA Missense_Mutation p.G266S 0.20 tolerated(0.28) benign(0.021) TCGA-CG-5728-01 6 142718831 142718831 A - GPR126 Frame_Shift_Del p.N504Ifs*9 0.21 TCGA-CG-5728-01 6 146126057 146126057 C T FBXO30 Silent p.P495P 0.21 TCGA-CG-5728-01 6 146480484 146480484 G T GRM1 Missense_Mutation p.G234V 0.20 deleterious(0) probably_damaging(0.989) TCGA-CG-5728-01 6 147124761 147124762 - T ADGB Intron 0.11 TCGA-CG-5728-01 6 147885753 147885753 A C SAMD5 3'UTR 0.23 TCGA-CG-5728-01 6 151857487 151857487 C T CCDC170 Missense_Mutation p.T31M 0.12 deleterious(0.05) probably_damaging(0.939) TCGA-CG-5728-01 6 152466625 152466625 A G SYNE1 Intron 0.07 TCGA-CG-5728-01 6 152702327 152702327 C A SYNE1 Missense_Mutation p.Q2941H 0.07 possibly_damaging(0.613) TCGA-CG-5728-01 6 152776602 152776602 C T SYNE1 Missense_Mutation p.E951K 0.22 benign(0.001) TCGA-CG-5728-01 6 15496926 15496926 G A JARID2 Silent p.P490P 0.21 TCGA-CG-5728-01 6 155577810 155577810 T C TIAM2 Missense_Mutation p.L1554S 0.18 tolerated(0.25) benign(0.002) TCGA-CG-5728-01 6 155581523 155581523 G A TFB1M Silent p.G226G 0.31 TCGA-CG-5728-01 6 157522620 157522620 T A ARID1B Missense_Mutation p.I1631N 0.17 probably_damaging(0.995) TCGA-CG-5728-01 6 158499313 158499313 G T SYNJ2 Missense_Mutation p.R856I 0.23 deleterious(0) probably_damaging(0.99) TCGA-CG-5728-01 6 158509770 158509770 C T SYNJ2 Missense_Mutation p.T1141M 0.20 tolerated_low_confidence(0.14) benign(0.027) TCGA-CG-5728-01 6 158834150 158834150 G A TULP4 Silent p.A102A 0.25 TCGA-CG-5728-01 6 159084246 159084246 G A SYTL3 5'UTR 0.19 TCGA-CG-5728-01 6 159654471 159654471 C T FNDC1 Missense_Mutation p.A976V 0.15 tolerated_low_confidence(0.63) unknown(0) TCGA-CG-5728-01 6 161135861 161135861 G T PLG Missense_Mutation p.G195C 0.06 deleterious(0) probably_damaging(1) TCGA-CG-5728-01 6 161139823 161139823 C T PLG Missense_Mutation p.P350L 0.17 deleterious(0.01) possibly_damaging(0.855) TCGA-CG-5728-01 6 163987695 163987695 T - QKI Intron 0.12 TCGA-CG-5728-01 6 167549868 167549868 G A CCR6 Silent p.P50P 0.19 TCGA-CG-5728-01 6 168319457 168319457 G A MLLT4 Missense_Mutation p.D911N 0.12 deleterious(0) probably_damaging(0.999) TCGA-CG-5728-01 6 24601407 24601407 T - KIAA0319 5'UTR 0.24 TCGA-CG-5728-01 6 25515955 25515955 T C LRRC16A Missense_Mutation p.I562T 0.40 deleterious(0.04) possibly_damaging(0.885) TCGA-CG-5728-01 6 25921412 25921412 C T SLC17A2 Missense_Mutation p.A157T 0.07 tolerated(0.15) benign(0.219) TCGA-CG-5728-01 6 26452153 26452153 C T BTN3A3 Silent p.V423V 0.26 TCGA-CG-5728-01 6 28219672 28219674 CTT - ZKSCAN4 In_Frame_Del p.K29del 0.24 TCGA-CG-5728-01 6 28269629 28269630 - A PGBD1 Frame_Shift_Ins p.M669Nfs*7 0.18 TCGA-CG-5728-01 6 28547153 28547153 A G SCAND3 Missense_Mutation p.M155T 0.20 deleterious_low_confidence(0.02) benign(0.004) TCGA-CG-5728-01 6 28964030 28964030 G A ZNF311 Missense_Mutation p.A250V 0.21 tolerated(0.28) benign(0.265) TCGA-CG-5728-01 6 30166679 30166679 C T TRIM26 Missense_Mutation p.V68M 0.06 tolerated(0.1) probably_damaging(0.992) TCGA-CG-5728-01 6 30571948 30571948 G A PPP1R10 Missense_Mutation p.R449C 0.23 deleterious(0) probably_damaging(0.93) TCGA-CG-5728-01 6 30673671 30673671 C A MDC1 Nonsense_Mutation p.E1097* 0.20 TCGA-CG-5728-01 6 31133735 31133735 G A POU5F1 Silent p.A165A 0.07 TCGA-CG-5728-01 6 31322412 31322412 G A HLA-B Missense_Mutation p.A348V 0.17 deleterious_low_confidence(0.04) probably_damaging(0.997) TCGA-CG-5728-01 6 31583458 31583458 C T AIF1 Silent p.D33D 0.26 TCGA-CG-5728-01 6 31868916 31868916 G T ZBTB12 Missense_Mutation p.P56H 0.23 deleterious(0) probably_damaging(0.971) TCGA-CG-5728-01 6 32011609 32011609 A T TNXB Missense_Mutation p.I245N 0.16 tolerated(0.12) possibly_damaging(0.648) TCGA-CG-5728-01 6 32117369 32117369 G A PRRT1 Missense_Mutation p.T230I 0.15 deleterious(0.01) benign(0.369) TCGA-CG-5728-01 6 32134513 32134513 G A EGFL8 Missense_Mutation p.R87Q 0.21 deleterious(0.02) possibly_damaging(0.784) TCGA-CG-5728-01 6 32847201 32847201 T - PPP1R2P1 RNA 0.23 TCGA-CG-5728-01 6 33424006 33424006 C - ZBTB9 Frame_Shift_Del p.P378Lfs*17 0.23 TCGA-CG-5728-01 6 33561013 33561013 A G GGNBP1 3'Flank 0.24 TCGA-CG-5728-01 6 33693227 33693227 G A IP6K3 Silent p.C252C 0.26 TCGA-CG-5728-01 6 33703227 33703227 G A IP6K3 Silent p.A9A 0.29 TCGA-CG-5728-01 6 34494033 34494033 G A PACSIN1 5'UTR 0.23 TCGA-CG-5728-01 6 35773664 35773664 C A LHFPL5 Missense_Mutation p.L73M 0.19 tolerated(0.08) probably_damaging(0.971) TCGA-CG-5728-01 6 38120049 38120049 C T ZFAND3 Missense_Mutation p.H190Y 0.19 deleterious(0) probably_damaging(1) TCGA-CG-5728-01 6 38690893 38690893 T C DNAH8 5'Flank 0.22 TCGA-CG-5728-01 6 39159505 39159505 C T KCNK5 Missense_Mutation p.A221T 0.17 tolerated(0.57) benign(0.096) TCGA-CG-5728-01 6 39693056 39693056 T G KIF6 Silent p.R11R 0.19 TCGA-CG-5728-01 6 4037685 4037685 C T PRPF4B Silent p.S431S 0.18 TCGA-CG-5728-01 6 4052975 4052975 A - PRPF4B Frame_Shift_Del p.K780Nfs*13 0.09 TCGA-CG-5728-01 6 4117629 4117629 T C ECI2 Silent p.Q314Q 0.19 TCGA-CG-5728-01 6 43017887 43017887 G A CUL7 Silent p.A545A 0.04 TCGA-CG-5728-01 6 43181612 43181612 G A CUL9 Missense_Mutation p.G1884R 0.22 deleterious_low_confidence(0.02) benign(0.017) TCGA-CG-5728-01 6 43192051 43192051 C T CUL9 Silent p.P2474P 0.25 TCGA-CG-5728-01 6 44344861 44344862 - T SPATS1 3'UTR 0.09 TCGA-CG-5728-01 6 45390650 45390650 C A RUNX2 Missense_Mutation p.P127T 0.09 deleterious(0) probably_damaging(0.915) TCGA-CG-5728-01 6 47846151 47846151 A - PTCHD4 Frame_Shift_Del p.F810Sfs*25 0.19 TCGA-CG-5728-01 6 4892486 4892486 A G CDYL Silent p.G188G 0.18 TCGA-CG-5728-01 6 50696582 50696582 G A TFAP2D Silent p.V204V 0.21 TCGA-CG-5728-01 6 52615254 52615254 A G GSTA2 3'UTR 0.09 TCGA-CG-5728-01 6 56382399 56382399 G A DST Missense_Mutation p.A3427V 0.36 benign(0.301) TCGA-CG-5728-01 6 56480956 56480956 G A DST Intron 0.16 TCGA-CG-5728-01 6 56499695 56499695 T - DST Frame_Shift_Del p.A545Qfs*4 0.23 TCGA-CG-5728-01 6 599181 599181 G A EXOC2 Missense_Mutation p.R263W 0.10 deleterious(0) probably_damaging(0.973) TCGA-CG-5728-01 6 62887178 62887178 T A KHDRBS2 Missense_Mutation p.D44V 0.21 tolerated(0.05) benign(0.039) TCGA-CG-5728-01 6 71004218 71004218 C T COL9A1 Silent p.T116T 0.19 TCGA-CG-5728-01 6 7232077 7232077 C - RREB1 Frame_Shift_Del p.H1250Tfs*55 0.16 TCGA-CG-5728-01 6 75893269 75893269 A - COL12A1 Frame_Shift_Del p.L463Wfs*5 0.22 TCGA-CG-5728-01 6 76388688 76388688 C T SENP6 Intron 0.19 TCGA-CG-5728-01 6 76425169 76425169 A - SENP6 Frame_Shift_Del p.R1068Efs*7 0.17 TCGA-CG-5728-01 6 79650339 79650339 A G PHIP 3'UTR 0.06 TCGA-CG-5728-01 6 80720630 80720630 A - TTK Frame_Shift_Del p.K192Sfs*18 0.17 TCGA-CG-5728-01 6 82949955 82949956 TT - IBTK Frame_Shift_Del p.K83Rfs*17 0.20 TCGA-CG-5728-01 6 86332349 86332350 CT - SYNCRIP Frame_Shift_Del p.G287Lfs*5 0.13 TCGA-CG-5728-01 6 89614482 89614482 G A RNGTT Silent p.P212P 0.20 TCGA-CG-5728-01 6 90661494 90661494 G A BACH2 Missense_Mutation p.R111C 0.27 tolerated(0.07) probably_damaging(0.926) TCGA-CG-5728-01 6 99894246 99894246 C - USP45 Frame_Shift_Del p.D468Ifs*3 0.16 TCGA-CG-5728-01 7 100192158 100192158 G A FBXO24 Missense_Mutation p.V354I 0.24 tolerated(1) benign(0) TCGA-CG-5728-01 7 100283673 100283673 C T GIGYF1 Silent p.E326E 0.09 TCGA-CG-5728-01 7 100403278 100403278 C T EPHB4 Silent p.P841P 0.29 TCGA-CG-5728-01 7 100454739 100454739 C T SLC12A9 Missense_Mutation p.P233L 0.22 tolerated(0.69) benign(0) TCGA-CG-5728-01 7 100732369 100732369 C T TRIM56 Silent p.H592H 0.22 TCGA-CG-5728-01 7 101845475 101845475 C T CUX1 Silent p.F977F 0.26 TCGA-CG-5728-01 7 102574619 102574619 C T LRRC17 Silent p.L87L 0.13 TCGA-CG-5728-01 7 106791470 106791470 T C PRKAR2B Splice_Site p.X281_splice 0.19 TCGA-CG-5728-01 7 107427311 107427311 T - SLC26A3 Frame_Shift_Del p.N311Tfs*11 0.21 TCGA-CG-5728-01 7 107816975 107816976 - T NRCAM Frame_Shift_Ins p.N1017Kfs*9 0.19 TCGA-CG-5728-01 7 112407336 112407336 A - TMEM168 Frame_Shift_Del p.F670Lfs*4 0.16 TCGA-CG-5728-01 7 1132152 1132152 C T GPER1 Missense_Mutation p.A263V 0.14 tolerated(0.38) benign(0.079) TCGA-CG-5728-01 7 113519436 113519436 C T PPP1R3A Missense_Mutation p.A571T 0.19 tolerated(1) benign(0) TCGA-CG-5728-01 7 117171005 117171005 A G CFTR Missense_Mutation p.Y109C 0.15 deleterious(0) possibly_damaging(0.902) TCGA-CG-5728-01 7 119915439 119915439 G A KCND2 Silent p.A251A 0.18 TCGA-CG-5728-01 7 120781026 120781026 G C CPED1 Missense_Mutation p.K615N 0.05 tolerated(0.97) benign(0.003) TCGA-CG-5728-01 7 12263969 12263969 C T TMEM106B Silent p.V133V 0.16 TCGA-CG-5728-01 7 123508820 123508820 C A HYAL4 Missense_Mutation p.Q165K 0.06 tolerated(0.37) benign(0.032) TCGA-CG-5728-01 7 127223030 127223030 C T GCC1 Missense_Mutation p.V456M 0.19 tolerated(0.13) benign(0.008) TCGA-CG-5728-01 7 127235709 127235709 C T FSCN3 Missense_Mutation p.R165C 0.17 tolerated(0.1) benign(0.007) TCGA-CG-5728-01 7 127732228 127732229 CA - SND1 3'UTR 0.17 TCGA-CG-5728-01 7 128483862 128483862 G A FLNC Missense_Mutation p.V942M 0.05 deleterious(0) possibly_damaging(0.878) TCGA-CG-5728-01 7 128494555 128494555 C T FLNC Silent p.S2272S 0.33 TCGA-CG-5728-01 7 129122851 129122851 C T STRIP2 Missense_Mutation p.R740C 0.09 deleterious(0) probably_damaging(0.993) TCGA-CG-5728-01 7 130351756 130351756 T C COPG2 Missense_Mutation p.N35S 0.32 deleterious(0.04) probably_damaging(0.992) TCGA-CG-5728-01 7 131895805 131895805 G T PLXNA4 Missense_Mutation p.S732Y 0.29 deleterious(0.01) probably_damaging(0.962) TCGA-CG-5728-01 7 132659927 132659927 A G CHCHD3 Splice_Site p.X123_splice 0.19 TCGA-CG-5728-01 7 134870852 134870852 C - WDR91 3'UTR 0.14 TCGA-CG-5728-01 7 135079001 135079001 C T CNOT4 Silent p.S432S 0.26 TCGA-CG-5728-01 7 137270094 137270094 T C DGKI Splice_Site p.X476_splice 0.16 TCGA-CG-5728-01 7 138758625 138758625 T C ZC3HAV1 Missense_Mutation p.T617A 0.16 tolerated(0.36) benign(0.027) TCGA-CG-5728-01 7 139315949 139315949 G A HIPK2 Missense_Mutation p.R437C 0.20 deleterious(0) possibly_damaging(0.531) TCGA-CG-5728-01 7 140255465 140255465 G A DENND2A Missense_Mutation p.R670C 0.04 deleterious(0) probably_damaging(1) TCGA-CG-5728-01 7 141351372 141351372 G A AGK Missense_Mutation p.C365Y 0.16 tolerated(1) benign(0.001) TCGA-CG-5728-01 7 141386388 141386388 A G KIAA1147 Silent p.S113S 0.18 TCGA-CG-5728-01 7 142568426 142568426 A G EPHB6 Missense_Mutation p.Q982R 0.19 tolerated(0.66) benign(0.002) TCGA-CG-5728-01 7 143140741 143140741 C T TAS2R60 Missense_Mutation p.R66C 0.25 tolerated(0.08) benign(0.109) TCGA-CG-5728-01 7 143701922 143701922 T C OR6B1 Missense_Mutation p.I278T 0.19 deleterious(0.02) probably_damaging(0.909) TCGA-CG-5728-01 7 143826976 143826976 G A OR2A14 Silent p.T257T 0.17 TCGA-CG-5728-01 7 148768017 148768017 G A ZNF786 Missense_Mutation p.T616M 0.33 deleterious(0) probably_damaging(0.996) TCGA-CG-5728-01 7 149152696 149152696 G - ZNF777 Frame_Shift_Del p.L140* 0.22 TCGA-CG-5728-01 7 149171723 149171723 C T ZNF746 Missense_Mutation p.V564M 0.37 deleterious(0.04) probably_damaging(0.987) TCGA-CG-5728-01 7 150945713 150945713 T - SMARCD3 5'UTR 0.35 TCGA-CG-5728-01 7 151856005 151856005 G A KMT2C Silent p.D3871D 0.23 TCGA-CG-5728-01 7 154263935 154263935 A T DPP6 Missense_Mutation p.L187F 0.22 tolerated(0.74) benign(0.088) TCGA-CG-5728-01 7 1588314 1588314 C T TMEM184A Missense_Mutation p.G219S 0.11 tolerated(0.13) probably_damaging(0.937) TCGA-CG-5728-01 7 158896468 158896468 C T VIPR2 Missense_Mutation p.D113N 0.14 tolerated(0.11) possibly_damaging(0.463) TCGA-CG-5728-01 7 17908067 17908067 C T SNX13 Missense_Mutation p.S267N 0.25 deleterious(0) probably_damaging(0.994) TCGA-CG-5728-01 7 19156576 19156576 C T TWIST1 Silent p.S123S 0.16 TCGA-CG-5728-01 7 22197498 22197498 A G RAPGEF5 Missense_Mutation p.V358A 0.10 tolerated(0.38) probably_damaging(0.99) TCGA-CG-5728-01 7 23018028 23018028 G A FAM126A Missense_Mutation p.R65C 0.16 deleterious(0) probably_damaging(1) TCGA-CG-5728-01 7 2402723 2402723 C G EIF3B Missense_Mutation p.D277E 0.05 tolerated(0.44) benign(0.011) TCGA-CG-5728-01 7 2687619 2687619 T C TTYH3 Missense_Mutation p.L218P 0.22 deleterious(0) probably_damaging(1) TCGA-CG-5728-01 7 30465314 30465314 G A NOD1 Silent p.N934N 0.07 TCGA-CG-5728-01 7 31792779 31792779 C T PDE1C 3'UTR 0.15 TCGA-CG-5728-01 7 33195315 33195315 G A BBS9 Splice_Site p.X110_splice 0.12 TCGA-CG-5728-01 7 38402707 38402707 C A TRGV2 Nonsense_Mutation p.E38* 0.17 TCGA-CG-5728-01 7 38402757 38402757 T C TRGV2 Missense_Mutation p.N21S 0.08 deleterious(0) possibly_damaging(0.481) TCGA-CG-5728-01 7 40899966 40899966 C T SUGCT Missense_Mutation p.P435L 0.16 deleterious(0) probably_damaging(1) TCGA-CG-5728-01 7 42004994 42004994 G T GLI3 Missense_Mutation p.P1226Q 0.16 tolerated_low_confidence(0.79) benign(0.004) TCGA-CG-5728-01 7 43635706 43635706 T G STK17A Missense_Mutation p.L138R 0.23 deleterious(0) probably_damaging(0.997) TCGA-CG-5728-01 7 44113278 44113278 G A POLM Silent p.S448S 0.16 TCGA-CG-5728-01 7 44151594 44151594 G A AEBP1 Missense_Mutation p.R661H 0.16 deleterious(0) probably_damaging(1) TCGA-CG-5728-01 7 45103550 45103550 C A CCM2 Missense_Mutation p.L101M 0.16 deleterious(0) probably_damaging(1) TCGA-CG-5728-01 7 45142994 45142994 C T TBRG4 Missense_Mutation p.V372I 0.11 tolerated(0.77) benign(0.004) TCGA-CG-5728-01 7 45748012 45748012 G A ADCY1 Missense_Mutation p.V961I 0.17 tolerated(0.09) probably_damaging(0.978) TCGA-CG-5728-01 7 48068665 48068665 C T SUN3 5'UTR 0.19 TCGA-CG-5728-01 7 50468283 50468283 G A IKZF1 Silent p.S464S 0.15 TCGA-CG-5728-01 7 5330864 5330864 C T SLC29A4 Silent p.T137T 0.23 TCGA-CG-5728-01 7 54610361 54610361 C T VSTM2A 5'UTR 0.23 TCGA-CG-5728-01 7 55240694 55240694 C T EGFR Silent p.I646I 0.18 TCGA-CG-5728-01 7 57528542 57528542 A - ZNF716 Frame_Shift_Del p.K127Nfs*6 0.17 TCGA-CG-5728-01 7 64004763 64004765 CTC - ZNF680 In_Frame_Del p.E26del 0.22 TCGA-CG-5728-01 7 64452895 64452895 C T ERV3-1 Silent p.T170T 0.14 TCGA-CG-5728-01 7 6505847 6505847 G A KDELR2 Silent p.F153F 0.19 TCGA-CG-5728-01 7 70252292 70252292 G A AUTS2 Silent p.S802S 0.18 TCGA-CG-5728-01 7 71142200 71142200 G A WBSCR17 Missense_Mutation p.R470H 0.21 deleterious(0) probably_damaging(0.986) TCGA-CG-5728-01 7 72738518 72738518 C T TRIM50 Missense_Mutation p.V90M 0.19 tolerated(0.05) benign(0.009) TCGA-CG-5728-01 7 73245910 73245910 T A CLDN4 Missense_Mutation p.L127M 0.11 deleterious(0.03) benign(0.246) TCGA-CG-5728-01 7 73604058 73604058 C T EIF4H Silent p.Y101Y 0.17 TCGA-CG-5728-01 7 73638506 73638506 C T LAT2 Missense_Mutation p.R203C 0.16 deleterious(0) probably_damaging(0.984) TCGA-CG-5728-01 7 74564631 74564631 T C GTF2IRD2B Missense_Mutation p.L793P 0.20 deleterious(0) probably_damaging(0.997) TCGA-CG-5728-01 7 86827314 86827314 C T TMEM243 Silent p.P59P 0.18 TCGA-CG-5728-01 7 87912268 87912268 G C STEAP4 Missense_Mutation p.I224M 0.15 deleterious(0) possibly_damaging(0.617) TCGA-CG-5728-01 7 88963633 88963633 T G ZNF804B Missense_Mutation p.V446G 0.20 deleterious(0) probably_damaging(0.999) TCGA-CG-5728-01 7 92027163 92027163 A G ANKIB1 Missense_Mutation p.D841G 0.14 tolerated_low_confidence(0.53) benign(0.003) TCGA-CG-5728-01 7 92147069 92147069 A - PEX1 Frame_Shift_Del p.S254Pfs*14 0.14 TCGA-CG-5728-01 7 94539376 94539376 T - PPP1R9A 5'UTR 0.20 TCGA-CG-5728-01 7 95775901 95775901 G A SLC25A13 Silent p.V474V 0.20 TCGA-CG-5728-01 7 99303025 99303025 C T CYP3A7 3'UTR 0.09 TCGA-CG-5728-01 7 99690627 99690627 C T MCM7 Silent p.A696A 0.12 TCGA-CG-5728-01 7 99818219 99818219 C T PVRIG Silent p.A173A 0.17 TCGA-CG-5728-01 8 100990287 100990288 - C RGS22 Frame_Shift_Ins p.V1126Gfs*4 0.19 TCGA-CG-5728-01 8 103292622 103292623 TT - UBR5 Frame_Shift_Del p.S2001Cfs*5 0.09 TCGA-CG-5728-01 8 103663847 103663847 G A KLF10 Missense_Mutation p.T238M 0.26 tolerated(0.07) possibly_damaging(0.708) TCGA-CG-5728-01 8 10583646 10583646 G - SOX7 Frame_Shift_Del p.L309Wfs*14 0.18 TCGA-CG-5728-01 8 106813836 106813836 T C ZFPM2 Missense_Mutation p.M509T 0.06 tolerated(0.21) benign(0.031) TCGA-CG-5728-01 8 107763096 107763096 C T OXR1 Missense_Mutation p.T851M 0.06 deleterious(0) probably_damaging(1) TCGA-CG-5728-01 8 108306187 108306188 TT - ANGPT1 Frame_Shift_Del p.G340Lfs*5 0.17 TCGA-CG-5728-01 8 110432768 110432768 C T PKHD1L1 Missense_Mutation p.P849L 0.09 deleterious(0) possibly_damaging(0.726) TCGA-CG-5728-01 8 113529433 113529433 C T CSMD3 Missense_Mutation p.R1529H 0.14 deleterious(0.04) probably_damaging(0.993) TCGA-CG-5728-01 8 116426159 116426160 - T TRPS1 3'UTR 0.13 TCGA-CG-5728-01 8 116426706 116426706 C T TRPS1 Missense_Mutation p.V1144M 0.13 tolerated_low_confidence(0.12) probably_damaging(0.999) TCGA-CG-5728-01 8 116430602 116430602 C T TRPS1 Missense_Mutation p.G927R 0.14 deleterious(0) probably_damaging(1) TCGA-CG-5728-01 8 117950492 117950492 G A AARD Missense_Mutation p.G4R 0.11 tolerated(0.19) benign(0.001) TCGA-CG-5728-01 8 119123086 119123086 G T EXT1 Missense_Mutation p.P67H 0.16 tolerated(0.05) benign(0.002) TCGA-CG-5728-01 8 12044028 12044028 C T FAM86B1 Missense_Mutation p.R158Q 0.12 tolerated(0.63) benign(0.004) TCGA-CG-5728-01 8 124267604 124267604 G A ZHX1 Missense_Mutation p.R195W 0.14 deleterious(0) probably_damaging(0.997) TCGA-CG-5728-01 8 124663913 124663913 G A KLHL38 Silent p.P418P 0.07 TCGA-CG-5728-01 8 134471899 134471899 A G ST3GAL1 3'UTR 0.22 TCGA-CG-5728-01 8 135596140 135596140 A G ZFAT Missense_Mutation p.M941T 0.09 tolerated(0.07) possibly_damaging(0.706) TCGA-CG-5728-01 8 135612794 135612794 C T ZFAT Missense_Mutation p.R787H 0.13 deleterious(0) probably_damaging(0.999) TCGA-CG-5728-01 8 135614222 135614222 G A ZFAT Silent p.T580T 0.14 TCGA-CG-5728-01 8 139164785 139164785 T G FAM135B Missense_Mutation p.S645R 0.06 tolerated(0.13) benign(0.303) TCGA-CG-5728-01 8 139609210 139609210 C - COL22A1 Frame_Shift_Del p.E1457Sfs*36 0.08 TCGA-CG-5728-01 8 13965704 13965704 C T SGCZ Silent p.P196P 0.12 TCGA-CG-5728-01 8 139833475 139833475 C T COL22A1 Silent p.A383A 0.09 TCGA-CG-5728-01 8 142221699 142221699 A T SLC45A4 Missense_Mutation p.F747I 0.05 deleterious_low_confidence(0) possibly_damaging(0.504) TCGA-CG-5728-01 8 143399948 143399948 C G TSNARE1 Missense_Mutation p.S314T 0.05 tolerated(0.29) benign(0.002) TCGA-CG-5728-01 8 143747230 143747230 G A JRK RNA 0.19 TCGA-CG-5728-01 8 143957721 143957721 G A CYP11B1 Missense_Mutation p.A297V 0.19 deleterious(0.01) probably_damaging(0.912) TCGA-CG-5728-01 8 144406745 144406745 G A TOP1MT Silent p.S242S 0.16 TCGA-CG-5728-01 8 144804319 144804319 G - MAPK15 Frame_Shift_Del p.G513Vfs*? 0.21 TCGA-CG-5728-01 8 144810854 144810854 C T FAM83H Silent p.A259A 0.20 TCGA-CG-5728-01 8 144942069 144942069 G A EPPK1 Missense_Mutation p.R1785C 0.23 benign(0.153) TCGA-CG-5728-01 8 144993399 144993399 G A PLEC Silent p.C3667C 0.10 TCGA-CG-5728-01 8 145066190 145066190 G A GRINA Missense_Mutation p.V213I 0.19 tolerated(0.29) benign(0.202) TCGA-CG-5728-01 8 145150906 145150908 CCT - CYC1 In_Frame_Del p.L102del 0.20 TCGA-CG-5728-01 8 145583773 145583773 A G SLC52A2 Silent p.S207S 0.06 TCGA-CG-5728-01 8 145666225 145666225 G A TONSL Missense_Mutation p.P347L 0.07 deleterious(0) probably_damaging(0.916) TCGA-CG-5728-01 8 145746672 145746672 C A LRRC14 Missense_Mutation p.P431H 0.08 deleterious(0) probably_damaging(0.998) TCGA-CG-5728-01 8 145770865 145770865 T C ARHGAP39 Silent p.P763P 0.16 TCGA-CG-5728-01 8 145773483 145773483 G - ARHGAP39 Frame_Shift_Del p.M330Wfs*54 0.09 TCGA-CG-5728-01 8 145773530 145773530 C T ARHGAP39 Missense_Mutation p.E314K 0.16 deleterious(0) possibly_damaging(0.891) TCGA-CG-5728-01 8 145999295 145999295 A G ZNF34 Missense_Mutation p.Y347H 0.13 tolerated(0.17) probably_damaging(0.987) TCGA-CG-5728-01 8 146156790 146156790 G A ZNF16 Silent p.H461H 0.08 TCGA-CG-5728-01 8 146157713 146157713 C T ZNF16 Missense_Mutation p.D154N 0.19 tolerated(0.13) benign(0.002) TCGA-CG-5728-01 8 17503472 17503472 G A MTUS1 Missense_Mutation p.S1259L 0.18 deleterious(0) probably_damaging(1) TCGA-CG-5728-01 8 17611433 17611433 C T MTUS1 Silent p.G628G 0.19 TCGA-CG-5728-01 8 17612446 17612446 C T MTUS1 Missense_Mutation p.A291T 0.04 tolerated(0.2) benign(0.084) TCGA-CG-5728-01 8 19277935 19277935 T C CSGALNACT1 Missense_Mutation p.S350G 0.17 tolerated(1) benign(0.03) TCGA-CG-5728-01 8 20003253 20003253 T G SLC18A1 3'UTR 0.15 TCGA-CG-5728-01 8 21882970 21882970 C T NPM2 Missense_Mutation p.R28W 0.16 deleterious(0) probably_damaging(0.99) TCGA-CG-5728-01 8 22452116 22452116 G A PDLIM2 3'Flank 0.19 TCGA-CG-5728-01 8 22868169 22868169 G A RHOBTB2 Missense_Mutation p.R602H 0.21 deleterious(0.02) probably_damaging(0.977) TCGA-CG-5728-01 8 23003346 23003347 - C TNFRSF10D Frame_Shift_Ins p.K191Efs*92 0.18 TCGA-CG-5728-01 8 23106740 23106740 G A CHMP7 Missense_Mutation p.R106Q 0.17 deleterious(0.02) possibly_damaging(0.753) TCGA-CG-5728-01 8 23291937 23291937 C T ENTPD4 Silent p.S505S 0.12 TCGA-CG-5728-01 8 23292942 23292942 C T ENTPD4 Missense_Mutation p.G475R 0.08 tolerated(0.09) possibly_damaging(0.766) TCGA-CG-5728-01 8 24171018 24171018 C T ADAM28 Silent p.S167S 0.13 TCGA-CG-5728-01 8 24187564 24187564 A T ADAM28 Missense_Mutation p.M347L 0.16 deleterious(0) probably_damaging(0.997) TCGA-CG-5728-01 8 24773137 24773137 A - NEFM Frame_Shift_Del p.N368Mfs*29 0.19 TCGA-CG-5728-01 8 25364716 25364716 A - CDCA2 Frame_Shift_Del p.N847Mfs*14 0.22 TCGA-CG-5728-01 8 26513311 26513311 T G DPYSL2 3'UTR 0.27 TCGA-CG-5728-01 8 27319109 27319109 C T CHRNA2 3'UTR 0.18 TCGA-CG-5728-01 8 27633949 27633949 A - ESCO2 Frame_Shift_Del p.N43Mfs*15 0.17 TCGA-CG-5728-01 8 28902895 28902895 A G HMBOX1 Missense_Mutation p.Q290R 0.05 deleterious(0.01) probably_damaging(0.995) TCGA-CG-5728-01 8 29921333 29921333 T - TMEM66 3'UTR 0.21 TCGA-CG-5728-01 8 30702292 30702292 T C TEX15 Silent p.S1414S 0.04 TCGA-CG-5728-01 8 3245111 3245111 G T CSMD1 Missense_Mutation p.T896N 0.14 benign(0.373) TCGA-CG-5728-01 8 35544067 35544067 T C UNC5D Silent p.D308D 0.21 TCGA-CG-5728-01 8 37967974 37967974 G A ASH2L Missense_Mutation p.R160Q 0.14 deleterious(0.03) probably_damaging(0.99) TCGA-CG-5728-01 8 38175410 38175410 G A WHSC1L1 Intron 0.19 TCGA-CG-5728-01 8 38840069 38840069 T C HTRA4 Silent p.T389T 0.16 TCGA-CG-5728-01 8 39131867 39131867 C T ADAM32 Silent p.S746S 0.18 TCGA-CG-5728-01 8 41522389 41522389 G A ANK1 Intron 0.10 TCGA-CG-5728-01 8 42812253 42812253 C A HOOK3 Missense_Mutation p.S162Y 0.13 deleterious(0.04) possibly_damaging(0.478) TCGA-CG-5728-01 8 43048942 43048942 C A HGSNAT Missense_Mutation p.L474M 0.12 deleterious(0) probably_damaging(0.963) TCGA-CG-5728-01 8 43054695 43054696 - T HGSNAT Frame_Shift_Ins p.W633Lfs*34 0.12 TCGA-CG-5728-01 8 48641512 48641512 G T SPIDR Missense_Mutation p.G818V 0.08 tolerated(0.18) benign(0.424) TCGA-CG-5728-01 8 48701555 48701555 T - PRKDC Frame_Shift_Del p.N3604Tfs*48 0.17 TCGA-CG-5728-01 8 49831439 49831439 T - SNAI2 Frame_Shift_Del p.N245Tfs*22 0.16 TCGA-CG-5728-01 8 49832564 49832564 G A SNAI2 Silent p.G172G 0.22 TCGA-CG-5728-01 8 49833856 49833856 G A SNAI2 5'UTR 0.21 TCGA-CG-5728-01 8 53852565 53852565 C T NPBWR1 Missense_Mutation p.P33L 0.14 deleterious(0.04) benign(0.001) TCGA-CG-5728-01 8 55542602 55542602 C G RP1 Missense_Mutation p.L2054V 0.06 tolerated(0.5) benign(0.013) TCGA-CG-5728-01 8 56723563 56723563 A G TGS1 Missense_Mutation p.K756R 0.17 tolerated(0.05) probably_damaging(0.997) TCGA-CG-5728-01 8 59512542 59512542 G A NSMAF Missense_Mutation p.T471M 0.18 deleterious(0) probably_damaging(0.997) TCGA-CG-5728-01 8 59872540 59872540 T G TOX Missense_Mutation p.M44L 0.16 tolerated(0.07) benign(0.267) TCGA-CG-5728-01 8 61769375 61769375 G A CHD7 Silent p.R2512R 0.07 TCGA-CG-5728-01 8 65527711 65527711 C T CYP7B1 Missense_Mutation p.R310Q 0.07 tolerated(0.29) benign(0.101) TCGA-CG-5728-01 8 67369066 67369066 A G ADHFE1 Missense_Mutation p.Y334C 0.11 deleterious(0.01) possibly_damaging(0.539) TCGA-CG-5728-01 8 67590095 67590095 C T C8orf44 Missense_Mutation p.A51V 0.08 tolerated_low_confidence(0.12) benign(0.001) TCGA-CG-5728-01 8 6794409 6794409 C T DEFA4 Missense_Mutation p.A5T 0.22 tolerated(0.67) unknown(0) TCGA-CG-5728-01 8 68170430 68170430 G A ARFGEF1 Silent p.F777F 0.19 TCGA-CG-5728-01 8 73849681 73849681 C T KCNB2 Silent p.T697T 0.12 TCGA-CG-5728-01 8 74859040 74859040 T C TCEB1 Missense_Mutation p.N55S 0.19 tolerated(0.2) benign(0.053) TCGA-CG-5728-01 8 74903693 74903693 T - LY96 Frame_Shift_Del p.S8Pfs*45 0.15 TCGA-CG-5728-01 8 76456166 76456166 A C HNF4G Missense_Mutation p.K70T 0.14 deleterious(0) probably_damaging(0.994) TCGA-CG-5728-01 8 77766792 77766792 G A ZFHX4 Silent p.P2545P 0.18 TCGA-CG-5728-01 8 77767737 77767737 C T ZFHX4 Silent p.C2860C 0.13 TCGA-CG-5728-01 8 77768336 77768336 C T ZFHX4 Missense_Mutation p.A3060V 0.13 probably_damaging(0.92) TCGA-CG-5728-01 8 7806751 7806751 A - ZNF705B Frame_Shift_Del p.N39Ifs*12 0.09 TCGA-CG-5728-01 8 80567284 80567284 G A STMN2 Missense_Mutation p.R156H 0.14 deleterious(0.01) possibly_damaging(0.767) TCGA-CG-5728-01 8 81411872 81411872 A G ZBTB10 Silent p.G372G 0.10 TCGA-CG-5728-01 8 86047209 86047209 A - LRRCC1 Frame_Shift_Del p.T701Qfs*9 0.12 TCGA-CG-5728-01 8 87473498 87473498 T C WWP1 Missense_Mutation p.F849L 0.11 deleterious(0) probably_damaging(0.999) TCGA-CG-5728-01 8 88885973 88885973 C T DCAF4L2 Missense_Mutation p.R76H 0.07 deleterious(0.01) benign(0.223) TCGA-CG-5728-01 8 89198806 89198806 G A MMP16 Silent p.C101C 0.22 TCGA-CG-5728-01 8 95686611 95686611 A - ESRP1 Frame_Shift_Del p.N512Tfs*2 0.23 TCGA-CG-5728-01 8 9590873 9590873 T C TNKS Silent p.N744N 0.04 TCGA-CG-5728-01 8 9609295 9609295 C T TNKS Silent p.A1003A 0.07 TCGA-CG-5728-01 9 100245161 100245161 G A TDRD7 Missense_Mutation p.A815T 0.15 tolerated(0.25) benign(0.003) TCGA-CG-5728-01 9 101552841 101552841 T C ANKS6 Missense_Mutation p.D136G 0.29 deleterious(0) possibly_damaging(0.823) TCGA-CG-5728-01 9 101787222 101787222 T C COL15A1 Missense_Mutation p.F641L 0.17 tolerated(0.71) benign(0.01) TCGA-CG-5728-01 9 104133686 104133686 T - BAAT Frame_Shift_Del p.M1? 0.20 TCGA-CG-5728-01 9 105767324 105767324 A - CYLC2 Frame_Shift_Del p.D140Ifs*8 0.17 TCGA-CG-5728-01 9 106862450 106862450 A - SMC2 Frame_Shift_Del p.K188Rfs*5 0.20 TCGA-CG-5728-01 9 114125875 114125875 T - KIAA0368 Frame_Shift_Del p.K1969Nfs*11 0.18 TCGA-CG-5728-01 9 114137450 114137450 G A KIAA0368 Silent p.G1529G 0.29 TCGA-CG-5728-01 9 115421992 115421992 G A KIAA1958 Silent p.T598T 0.21 TCGA-CG-5728-01 9 116135765 116135765 C T HDHD3 3'UTR 0.28 TCGA-CG-5728-01 9 116246469 116246469 G A RGS3 Missense_Mutation p.V193I 0.22 tolerated(0.45) benign(0.003) TCGA-CG-5728-01 9 117786296 117786296 G A TNC Missense_Mutation p.R2151C 0.20 deleterious(0) probably_damaging(1) TCGA-CG-5728-01 9 119188076 119188076 A G ASTN2 3'UTR 0.12 TCGA-CG-5728-01 9 119188284 119188284 C T ASTN2 Missense_Mutation p.R1238H 0.22 tolerated(0.1) unknown(0) TCGA-CG-5728-01 9 119382602 119382602 G - ASTN2 Frame_Shift_Del p.L1014Ffs*58 0.20 TCGA-CG-5728-01 9 125330568 125330568 G C OR1L8 Missense_Mutation p.F63L 0.19 deleterious(0.04) benign(0.076) TCGA-CG-5728-01 9 125748541 125748541 G A RABGAP1 Missense_Mutation p.V145I 0.24 tolerated(0.22) benign(0.15) TCGA-CG-5728-01 9 126125190 126125190 C T CRB2 Silent p.C47C 0.23 TCGA-CG-5728-01 9 127495601 127495601 A G NR6A1 Missense_Mutation p.L43P 0.19 tolerated_low_confidence(0.23) benign(0) TCGA-CG-5728-01 9 127994881 127994881 T C RABEPK Missense_Mutation p.M228T 0.08 deleterious(0) probably_damaging(0.985) TCGA-CG-5728-01 9 130656852 130656852 C T ST6GALNAC6 Missense_Mutation p.R79Q 0.07 benign(0.004) TCGA-CG-5728-01 9 131399202 131399202 G A WDR34 Silent p.Y180Y 0.15 TCGA-CG-5728-01 9 131456213 131456213 A T SET Missense_Mutation p.E247D 0.23 tolerated(0.84) unknown(0) TCGA-CG-5728-01 9 131493530 131493530 G A ZER1 3'UTR 0.30 TCGA-CG-5728-01 9 131784632 131784632 C T SH3GLB2 Missense_Mutation p.R45Q 0.18 deleterious(0.02) possibly_damaging(0.871) TCGA-CG-5728-01 9 131847046 131847046 C T DOLPP1 Missense_Mutation p.T59M 0.22 deleterious(0) probably_damaging(1) TCGA-CG-5728-01 9 13217262 13217262 C A MPDZ Missense_Mutation p.S373I 0.10 tolerated(0.28) benign(0.002) TCGA-CG-5728-01 9 132400635 132400635 T C ASB6 Missense_Mutation p.M234V 0.15 tolerated(0.31) benign(0.005) TCGA-CG-5728-01 9 133779552 133779552 C T FIBCD1 Missense_Mutation p.A429T 0.19 tolerated(0.45) benign(0.044) TCGA-CG-5728-01 9 134165480 134165480 C G PPAPDC3 Silent p.G32G 0.21 TCGA-CG-5728-01 9 135102370 135102370 G A NTNG2 Missense_Mutation p.G331D 0.19 deleterious(0) probably_damaging(0.996) TCGA-CG-5728-01 9 135251548 135251548 G A TTF1 Silent p.I824I 0.24 TCGA-CG-5728-01 9 135553527 135553527 G A GTF3C4 Missense_Mutation p.C174Y 0.22 deleterious(0) probably_damaging(0.998) TCGA-CG-5728-01 9 135771569 135771571 CCT - TSC1 3'UTR 0.18 TCGA-CG-5728-01 9 135919245 135919245 C - GTF3C5 Frame_Shift_Del p.P170Hfs*35 0.27 TCGA-CG-5728-01 9 135946427 135946427 C T CEL Missense_Mutation p.T516M 0.10 tolerated(0.12) benign(0.004) TCGA-CG-5728-01 9 136304557 136304557 C T ADAMTS13 Silent p.F592F 0.18 TCGA-CG-5728-01 9 136389958 136389958 C T TMEM8C Silent p.T3T 0.22 TCGA-CG-5728-01 9 136577755 136577755 A G SARDH Silent p.H438H 0.30 TCGA-CG-5728-01 9 137660308 137660308 C T COL5A1 Missense_Mutation p.P762L 0.10 benign(0.133) TCGA-CG-5728-01 9 138903414 138903414 G A NACC2 Missense_Mutation p.T571M 0.16 deleterious_low_confidence(0) unknown(0) TCGA-CG-5728-01 9 139407849 139407849 A G NOTCH1 Missense_Mutation p.F783S 0.31 deleterious(0.01) probably_damaging(0.99) TCGA-CG-5728-01 9 139887571 139887572 - G C9orf142 Frame_Shift_Ins p.P102Afs*7 0.25 TCGA-CG-5728-01 9 139925145 139925145 C - FUT7 3'UTR 0.20 TCGA-CG-5728-01 9 140087050 140087050 C G TPRN Missense_Mutation p.E607Q 0.12 deleterious(0.05) benign(0.366) TCGA-CG-5728-01 9 140344457 140344457 C T NSMF Missense_Mutation p.R446H 0.20 tolerated(0.08) benign(0.02) TCGA-CG-5728-01 9 140773593 140773593 G A CACNA1B Silent p.T124T 0.14 TCGA-CG-5728-01 9 15678851 15678851 A G CCDC171 Missense_Mutation p.Y391C 0.17 tolerated(0.09) possibly_damaging(0.893) TCGA-CG-5728-01 9 16582983 16582983 T C BNC2 Missense_Mutation p.H144R 0.19 deleterious(0) probably_damaging(0.994) TCGA-CG-5728-01 9 19346646 19346646 T G DENND4C Missense_Mutation p.S1244R 0.24 deleterious(0) possibly_damaging(0.885) TCGA-CG-5728-01 9 2076291 2076291 C T SMARCA2 Silent p.S666S 0.04 TCGA-CG-5728-01 9 20912931 20912931 A - FOCAD Frame_Shift_Del p.S931Afs*11 0.16 TCGA-CG-5728-01 9 20988400 20988400 C T FOCAD Missense_Mutation p.T1659I 0.26 tolerated(0.28) benign(0.003) TCGA-CG-5728-01 9 311983 311983 C T DOCK8 Silent p.C186C 0.20 TCGA-CG-5728-01 9 32784413 32784413 C T TMEM215 Missense_Mutation p.R78C 0.18 deleterious_low_confidence(0.03) probably_damaging(0.997) TCGA-CG-5728-01 9 34269331 34269331 T C KIF24 Missense_Mutation p.E456G 0.21 deleterious(0) probably_damaging(0.989) TCGA-CG-5728-01 9 34371111 34371111 G A KIAA1161 Missense_Mutation p.R577W 0.21 deleterious(0) probably_damaging(0.971) TCGA-CG-5728-01 9 34977144 34977144 G - KIAA1045 Frame_Shift_Del p.G306Afs*91 0.34 TCGA-CG-5728-01 9 4118541 4118541 C T GLIS3 Missense_Mutation p.G313R 0.20 deleterious(0) probably_damaging(1) TCGA-CG-5728-01 9 4663310 4663310 T - PPAPDC2 3'UTR 0.17 TCGA-CG-5728-01 9 5065030 5065030 G A JAK2 Missense_Mutation p.G402S 0.21 deleterious(0) probably_damaging(0.997) TCGA-CG-5728-01 9 5335449 5335449 C T RLN1 Silent p.K120K 0.38 TCGA-CG-5728-01 9 5805191 5805191 A - ERMP1 Frame_Shift_Del p.Y584Tfs*49 0.24 TCGA-CG-5728-01 9 75420425 75420425 A G TMC1 Missense_Mutation p.Y565C 0.23 deleterious(0) probably_damaging(0.932) TCGA-CG-5728-01 9 75555148 75555148 C T ALDH1A1 Nonsense_Mutation p.W29* 0.15 TCGA-CG-5728-01 9 77681726 77681726 T C NMRK1 Missense_Mutation p.D176G 0.18 deleterious(0.02) benign(0.026) TCGA-CG-5728-01 9 7798583 7798583 C T TMEM261 Missense_Mutation p.R110H 0.18 tolerated(0.08) benign(0.037) TCGA-CG-5728-01 9 79322121 79322121 T C PRUNE2 Missense_Mutation p.D1690G 0.16 tolerated(0.1) benign(0.004) TCGA-CG-5728-01 9 79984308 79984308 T - VPS13A Frame_Shift_Del p.Y2885Mfs*20 0.17 TCGA-CG-5728-01 9 8465548 8465548 T C PTPRD Missense_Mutation p.Y1211C 0.22 deleterious(0) probably_damaging(0.998) TCGA-CG-5728-01 9 8518185 8518185 C - PTPRD Frame_Shift_Del p.P403Lfs*7 0.21 TCGA-CG-5728-01 9 86284162 86284164 ACA - UBQLN1 In_Frame_Del p.L395del 0.19 TCGA-CG-5728-01 9 86457221 86457221 G A KIF27 Missense_Mutation p.R1218W 0.22 deleterious(0) probably_damaging(1) TCGA-CG-5728-01 9 95481509 95481509 C T BICD2 Missense_Mutation p.R473H 0.28 tolerated(0.14) possibly_damaging(0.832) TCGA-CG-5728-01 9 95610559 95610559 G T ZNF484 Silent p.S172S 0.04 TCGA-CG-5728-01 9 95784667 95784667 C G FGD3 Missense_Mutation p.A518G 0.05 tolerated(0.39) benign(0.004) TCGA-CG-5728-01 9 99250411 99250411 G A HABP4 Missense_Mutation p.R347Q 0.25 deleterious(0.01) probably_damaging(0.924) TCGA-CG-5728-01 X 102004167 102004167 G A BHLHB9 Missense_Mutation p.G82S 0.19 tolerated(0.54) benign(0.058) TCGA-CG-5728-01 X 105937256 105937257 TT - RNF128 Frame_Shift_Del p.F10Lfs*11 0.26 TCGA-CG-5728-01 X 119387854 119387857 TCAT ATGTCA ZBTB33 Frame_Shift_Ins p.V195Dfs*47 0.30 TCGA-CG-5728-01 X 119389224 119389225 - T ZBTB33 Frame_Shift_Ins p.K654* 0.17 TCGA-CG-5728-01 X 119760722 119760722 G A C1GALT1C1 Silent p.F100F 0.09 TCGA-CG-5728-01 X 122759791 122759791 T A THOC2 Missense_Mutation p.N1010I 0.22 deleterious(0) probably_damaging(0.986) TCGA-CG-5728-01 X 123695633 123695633 T C TENM1 Silent p.R774R 0.24 TCGA-CG-5728-01 X 129272624 129272624 G A AIFM1 Missense_Mutation p.T304M 0.28 deleterious(0) probably_damaging(0.991) TCGA-CG-5728-01 X 132161368 132161368 C T USP26 Missense_Mutation p.C294Y 0.07 tolerated(0.12) benign(0.028) TCGA-CG-5728-01 X 134166475 134166475 G A FAM127A Missense_Mutation p.R21H 0.07 deleterious_low_confidence(0.04) possibly_damaging(0.57) TCGA-CG-5728-01 X 134186202 134186202 G A FAM127B 5'UTR 0.30 TCGA-CG-5728-01 X 134494414 134494414 C T ZNF449 Nonsense_Mutation p.R324* 0.19 TCGA-CG-5728-01 X 134680317 134680317 T - DDX26B Frame_Shift_Del p.L120* 0.25 TCGA-CG-5728-01 X 135494507 135494507 C T GPR112 Nonsense_Mutation p.R3007* 0.07 TCGA-CG-5728-01 X 142596637 142596637 T C SPANXN3 3'UTR 0.26 TCGA-CG-5728-01 X 148037970 148037970 A - AFF2 Frame_Shift_Del p.N800Tfs*4 0.25 TCGA-CG-5728-01 X 151366116 151366116 C T GABRA3 Missense_Mutation p.R307H 0.23 deleterious(0) probably_damaging(0.997) TCGA-CG-5728-01 X 152226635 152226635 G A PNMA3 Missense_Mutation p.R408Q 0.28 tolerated(0.15) benign(0) TCGA-CG-5728-01 X 152721027 152721027 C T HAUS7 Silent p.T311T 0.28 TCGA-CG-5728-01 X 155235745 155235745 C T IL9R Intron 0.08 TCGA-CG-5728-01 X 15619104 15619105 TC - ACE2 5'UTR 0.28 TCGA-CG-5728-01 X 15870579 15870579 T G AP1S2 Silent p.S23S 0.22 TCGA-CG-5728-01 X 18913264 18913264 T C PHKA2 Missense_Mutation p.T1110A 0.20 deleterious(0) probably_damaging(0.954) TCGA-CG-5728-01 X 24229411 24229411 A G ZFX Missense_Mutation p.E779G 0.30 deleterious(0) possibly_damaging(0.676) TCGA-CG-5728-01 X 30268697 30268697 C T MAGEB1 Silent p.H29H 0.30 TCGA-CG-5728-01 X 31164461 31164461 C T DMD Missense_Mutation p.S3623N 0.31 benign(0.383) TCGA-CG-5728-01 X 32591746 32591746 A - DMD Frame_Shift_Del p.F571Lfs*12 0.13 TCGA-CG-5728-01 X 37587768 37587768 G A XK 3'UTR 0.26 TCGA-CG-5728-01 X 41587149 41587149 A - GPR82 Frame_Shift_Del p.N292Tfs*21 0.22 TCGA-CG-5728-01 X 45051067 45051067 G T CXorf36 Missense_Mutation p.R143S 0.18 deleterious(0.02) benign(0.271) TCGA-CG-5728-01 X 46513103 46513103 G A SLC9A7 Missense_Mutation p.A362V 0.21 deleterious(0.02) possibly_damaging(0.658) TCGA-CG-5728-01 X 47085414 47085414 G A CDK16 Missense_Mutation p.M334I 0.21 tolerated(0.1) benign(0.035) TCGA-CG-5728-01 X 51487864 51487865 - A GSPT2 Frame_Shift_Ins p.D384Gfs*16 0.20 TCGA-CG-5728-01 X 51638686 51638686 A G MAGED1 Missense_Mutation p.T251A 0.24 tolerated_low_confidence(0.4) unknown(0) TCGA-CG-5728-01 X 52677309 52677309 A G SSX7 Splice_Site p.X156_splice 0.25 TCGA-CG-5728-01 X 5827153 5827153 A C NLGN4X Missense_Mutation p.F251L 0.20 tolerated(0.1) probably_damaging(0.968) TCGA-CG-5728-01 X 591587 591587 G A SHOX 5'UTR 0.13 TCGA-CG-5728-01 X 62974233 62974233 C - ARHGEF9 5'UTR 0.27 TCGA-CG-5728-01 X 64749749 64749749 A G LAS1L Missense_Mutation p.F175S 0.19 deleterious(0.01) probably_damaging(0.958) TCGA-CG-5728-01 X 70327614 70327614 G - IL2RG Frame_Shift_Del p.P361Hfs*5 0.32 TCGA-CG-5728-01 X 76225900 76225900 A C MIR325 RNA 0.24 TCGA-CG-5728-01 X 77224579 77224579 T C PGAM4 Missense_Mutation p.H186R 0.29 deleterious(0) possibly_damaging(0.596) TCGA-CG-5728-01 X 83141586 83141586 G T CYLC1 Silent p.L650L 0.19 TCGA-CG-5728-01 X 83724297 83724297 T - HDX Frame_Shift_Del p.N145Mfs*15 0.13 TCGA-CG-5728-01 X 84526621 84526621 A - ZNF711 Frame_Shift_Del p.K693Nfs*3 0.20 TCGA-CG-5728-01 X 91133388 91133388 G T PCDH11X Nonsense_Mutation p.G717* 0.22 TCGA-CG-5730-01 10 115608783 115608783 C T DCLRE1A Missense_Mutation p.G694E 0.20 tolerated(0.19) benign(0.012) TCGA-CG-5730-01 10 132965080 132965080 C T TCERG1L Missense_Mutation p.D309N 0.22 tolerated(0.49) benign(0) TCGA-CG-5730-01 10 17908673 17908673 C A MRC1L1 Missense_Mutation p.A629E 0.33 probably_damaging(0.995) TCGA-CG-5730-01 10 31610347 31610348 - TA ZEB1 Intron 0.18 TCGA-CG-5730-01 10 50732109 50732109 C T ERCC6-PGBD3 Missense_Mutation p.G456E 0.39 deleterious_low_confidence(0.02) unknown(0) TCGA-CG-5730-01 10 88818962 88818962 G A GLUD1 Silent p.V449V 0.03 TCGA-CG-5730-01 11 118764730 118764730 C T CXCR5 Silent p.R159R 0.22 TCGA-CG-5730-01 11 118772974 118772974 G A BCL9L Missense_Mutation p.P493L 0.24 benign(0.024) TCGA-CG-5730-01 11 123900713 123900713 G A OR10G8 Silent p.P128P 0.25 TCGA-CG-5730-01 11 20403748 20403748 G T HTATIP2 Nonsense_Mutation p.E190* 0.30 TCGA-CG-5730-01 11 28098559 28098559 C G KIF18A Missense_Mutation p.E474Q 0.32 tolerated(0.08) possibly_damaging(0.798) TCGA-CG-5730-01 11 4825678 4825678 G C OR52R1 5'Flank 0.31 TCGA-CG-5730-01 11 58477536 58477536 C T GLYAT Silent p.E198E 0.21 TCGA-CG-5730-01 11 65649722 65649722 T A CTSW Silent p.S121S 0.29 TCGA-CG-5730-01 11 69625121 69625121 G A FGF3 Silent p.H224H 0.33 TCGA-CG-5730-01 11 724768 724768 T G EPS8L2 Missense_Mutation p.L500R 0.37 tolerated(0.8) benign(0.029) TCGA-CG-5730-01 12 112119630 112119630 T A BRAP Missense_Mutation p.K85I 0.27 tolerated(0.18) benign(0.011) TCGA-CG-5730-01 12 119592119 119592119 G A SRRM4 Missense_Mutation p.R488Q 0.19 deleterious_low_confidence(0.01) probably_damaging(0.947) TCGA-CG-5730-01 12 123087726 123087726 C T KNTC1 Silent p.L1679L 0.30 TCGA-CG-5730-01 12 130647946 130647946 C T FZD10 Silent p.N153N 0.05 TCGA-CG-5730-01 12 6103352 6103352 C T VWF Missense_Mutation p.G2092R 0.20 tolerated(0.15) probably_damaging(0.995) TCGA-CG-5730-01 12 95602789 95602789 T C FGD6 Missense_Mutation p.I757M 0.28 deleterious(0) possibly_damaging(0.897) TCGA-CG-5730-01 13 41768160 41768160 C T KBTBD7 Silent p.T78T 0.07 TCGA-CG-5730-01 13 58207716 58207716 G A PCDH17 Missense_Mutation p.D346N 0.19 deleterious(0) probably_damaging(1) TCGA-CG-5730-01 13 77785411 77785411 G A MYCBP2 Missense_Mutation p.L1065F 0.15 probably_damaging(0.966) TCGA-CG-5730-01 13 95050742 95050742 G A GPC6 Missense_Mutation p.D438N 0.05 tolerated(0.44) benign(0.06) TCGA-CG-5730-01 14 101520685 101520685 G T MIR382 RNA 0.29 TCGA-CG-5730-01 14 20876371 20876371 G A TEP1 Silent p.S76S 0.25 TCGA-CG-5730-01 14 45431744 45431744 C T FAM179B Silent p.G40G 0.13 TCGA-CG-5730-01 14 51390727 51390727 A G PYGL Missense_Mutation p.V207A 0.29 deleterious(0) possibly_damaging(0.581) TCGA-CG-5730-01 14 51561331 51561331 C T TRIM9 Silent p.P109P 0.24 TCGA-CG-5730-01 14 70991149 70991149 C T ADAM20 Missense_Mutation p.C159Y 0.21 deleterious(0) probably_damaging(0.99) TCGA-CG-5730-01 15 20588514 20588514 C A HERC2P3 RNA 0.19 TCGA-CG-5730-01 15 25605639 25605639 C T UBE3A Silent p.L551L 0.07 TCGA-CG-5730-01 15 48451038 48451038 C T MYEF2 Missense_Mutation p.D267N 0.24 deleterious(0) probably_damaging(0.925) TCGA-CG-5730-01 15 90169262 90169262 A T TICRR Missense_Mutation p.T1858S 0.04 deleterious(0.02) possibly_damaging(0.487) TCGA-CG-5730-01 16 2031221 2031221 G A NOXO1 5'Flank 0.31 TCGA-CG-5730-01 16 2226124 2226124 C T TRAF7 Silent p.V607V 0.11 TCGA-CG-5730-01 16 29818144 29818144 C G MAZ Missense_Mutation p.P41R 0.14 deleterious_low_confidence(0) possibly_damaging(0.904) TCGA-CG-5730-01 16 5077160 5077160 G A NAGPA Missense_Mutation p.A439V 0.37 benign(0.028) TCGA-CG-5730-01 16 88722698 88722698 G A MVD Missense_Mutation p.R140C 0.16 tolerated(0.08) benign(0.004) TCGA-CG-5730-01 17 33749495 33749495 A T SLFN12 Missense_Mutation p.F185I 0.06 deleterious(0.01) probably_damaging(0.991) TCGA-CG-5730-01 17 34073428 34073428 C T GAS2L2 Missense_Mutation p.C363Y 0.07 tolerated(1) benign(0.001) TCGA-CG-5730-01 17 34171858 34171858 C T TAF15 Nonsense_Mutation p.R519* 0.09 TCGA-CG-5730-01 17 37815008 37815008 G T STARD3 Missense_Mutation p.G194V 0.72 deleterious(0.02) possibly_damaging(0.507) TCGA-CG-5730-01 17 37868208 37868208 C T ERBB2 Missense_Mutation p.S310F 0.96 deleterious(0) probably_damaging(0.994) TCGA-CG-5730-01 17 39596697 39596697 C T KRT38 Silent p.E159E 0.02 TCGA-CG-5730-01 17 42171083 42171083 G A HDAC5 Missense_Mutation p.R73W 0.39 deleterious_low_confidence(0.03) probably_damaging(0.992) TCGA-CG-5730-01 17 45776813 45776813 C T TBKBP1 Silent p.C254C 0.20 TCGA-CG-5730-01 17 62801173 62801173 G A PLEKHM1P RNA 0.06 TCGA-CG-5730-01 17 67280173 67280173 G T ABCA5 Silent p.V771V 0.05 TCGA-CG-5730-01 17 73235959 73235959 G A GGA3 Silent p.P498P 0.05 TCGA-CG-5730-01 17 74003189 74003189 G A EVPL Missense_Mutation p.R2033C 0.50 deleterious_low_confidence(0) possibly_damaging(0.869) TCGA-CG-5730-01 17 7416391 7416391 G A POLR2A Missense_Mutation p.R1603H 0.37 possibly_damaging(0.531) TCGA-CG-5730-01 17 7578190 7578190 T C TP53 Missense_Mutation p.Y220C 0.82 deleterious(0) probably_damaging(1) TCGA-CG-5730-01 18 265478 265478 G A THOC1 Missense_Mutation p.T36I 0.32 tolerated(0.23) benign(0) TCGA-CG-5730-01 18 31324706 31324706 G A ASXL3 Missense_Mutation p.E1632K 0.25 benign(0.092) TCGA-CG-5730-01 18 39575919 39575919 C T PIK3C3 Silent p.H284H 0.29 TCGA-CG-5730-01 18 43221171 43221171 T C SLC14A2 Intron 0.36 TCGA-CG-5730-01 18 70532420 70532420 C A NETO1 Intron 0.19 TCGA-CG-5730-01 19 15166303 15166303 T A CASP14 Missense_Mutation p.F195I 0.42 tolerated(0.19) possibly_damaging(0.663) TCGA-CG-5730-01 19 22940729 22940729 G T ZNF99 Missense_Mutation p.S661Y 0.12 tolerated(1) possibly_damaging(0.51) TCGA-CG-5730-01 19 43680066 43680066 C T PSG5 Missense_Mutation p.R222Q 0.21 deleterious(0.04) benign(0.015) TCGA-CG-5730-01 19 45593700 45593700 C T GEMIN7 Missense_Mutation p.P110S 0.22 deleterious(0.01) probably_damaging(1) TCGA-CG-5730-01 19 45997638 45997638 G A RTN2 Silent p.P200P 0.07 TCGA-CG-5730-01 19 48543884 48543884 G A CABP5 Silent p.L72L 0.53 TCGA-CG-5730-01 19 49867939 49867939 C T DKKL1 Silent p.D37D 0.15 TCGA-CG-5730-01 19 50103130 50103130 C T PRR12 Missense_Mutation p.A1427V 0.21 benign(0.024) TCGA-CG-5730-01 19 51301810 51301810 C T C19orf48 5'UTR 0.29 TCGA-CG-5730-01 19 53015310 53015310 G A ZNF578 Missense_Mutation p.R559K 0.07 tolerated(0.14) probably_damaging(0.921) TCGA-CG-5730-01 19 56925784 56925784 G A ZNF583 Silent p.K69K 0.41 TCGA-CG-5730-01 19 58152366 58152366 C T ZNF211 Missense_Mutation p.S236L 0.22 tolerated(0.23) benign(0.009) TCGA-CG-5730-01 1 117663878 117663879 AG - TRIM45 5'UTR 0.34 TCGA-CG-5730-01 1 118566057 118566057 C T SPAG17 Silent p.R1313R 0.10 TCGA-CG-5730-01 1 149895490 149895490 T A SF3B4 Missense_Mutation p.T407S 0.43 tolerated_low_confidence(0.24) unknown(0) TCGA-CG-5730-01 1 152277533 152277533 G A FLG Missense_Mutation p.R3277C 0.12 unknown(0) TCGA-CG-5730-01 1 155028289 155028289 C G ADAM15 Silent p.T212T 0.22 TCGA-CG-5730-01 1 160105320 160105320 G A ATP1A2 Missense_Mutation p.V738I 0.72 deleterious(0.01) benign(0.095) TCGA-CG-5730-01 1 160607204 160607204 G A SLAMF1 Silent p.V64V 0.16 TCGA-CG-5730-01 1 180062030 180062030 A G CEP350 Missense_Mutation p.T2264A 0.41 benign(0.001) TCGA-CG-5730-01 1 186055473 186055473 C G HMCN1 Missense_Mutation p.P2994A 0.20 probably_damaging(0.998) TCGA-CG-5730-01 1 192335230 192335231 - A RGS21 Frame_Shift_Ins p.W148Mfs*13 0.11 TCGA-CG-5730-01 1 206776401 206776401 G A EIF2D Missense_Mutation p.H230Y 0.22 deleterious(0.05) benign(0.024) TCGA-CG-5730-01 1 22032676 22032676 G A USP48 Missense_Mutation p.T739M 0.33 deleterious(0.02) benign(0.357) TCGA-CG-5730-01 1 231056309 231056309 G A TTC13 Missense_Mutation p.R644W 0.20 deleterious(0) probably_damaging(0.959) TCGA-CG-5730-01 1 237886549 237886549 T C RYR2 Missense_Mutation p.F3559S 0.35 benign(0.074) TCGA-CG-5730-01 1 237961336 237961336 G A RYR2 Splice_Site p.X4653_splice 0.22 TCGA-CG-5730-01 1 27176839 27176839 C T ZDHHC18 Missense_Mutation p.R232W 0.41 deleterious(0.01) possibly_damaging(0.751) TCGA-CG-5730-01 1 27721178 27721178 C T GPR3 Silent p.I292I 0.12 TCGA-CG-5730-01 1 34238227 34238227 T C CSMD2 Missense_Mutation p.K557E 0.34 deleterious(0.02) possibly_damaging(0.689) TCGA-CG-5730-01 1 38351367 38351367 C T INPP5B Missense_Mutation p.R421Q 0.31 deleterious(0) probably_damaging(0.999) TCGA-CG-5730-01 1 42050416 42050416 C T HIVEP3 Missense_Mutation p.R18Q 0.26 probably_damaging(0.996) TCGA-CG-5730-01 1 43393459 43393459 G T SLC2A1 Silent p.S365S 0.23 TCGA-CG-5730-01 1 57257958 57257958 C A C1orf168 Silent p.G176G 0.30 TCGA-CG-5730-01 1 9011622 9011622 G A CA6 Intron 0.55 TCGA-CG-5730-01 20 18395078 18395078 A G DZANK1 Missense_Mutation p.C386R 0.20 deleterious(0) probably_damaging(0.996) TCGA-CG-5730-01 20 24524024 24524024 C T SYNDIG1 Silent p.G97G 0.21 TCGA-CG-5730-01 20 3065299 3065299 C T AVP Missense_Mutation p.A8T 0.43 tolerated(0.27) benign(0.015) TCGA-CG-5730-01 20 39992409 39992409 C T EMILIN3 Missense_Mutation p.R128H 0.07 deleterious(0.01) benign(0.384) TCGA-CG-5730-01 20 43804672 43804672 G A PI3 Missense_Mutation p.A84T 0.26 tolerated(0.36) probably_damaging(0.942) TCGA-CG-5730-01 20 5905665 5905665 G T CHGB Missense_Mutation p.K668N 0.13 deleterious(0.02) possibly_damaging(0.591) TCGA-CG-5730-01 20 61040939 61040939 C T GATA5 Silent p.Q288Q 0.21 TCGA-CG-5730-01 21 43912907 43912907 G C RSPH1 Missense_Mutation p.Q79E 0.03 tolerated(0.1) possibly_damaging(0.525) TCGA-CG-5730-01 21 46047148 46047148 C G KRTAP10-9 Missense_Mutation p.D20E 0.28 tolerated(0.06) unknown(0) TCGA-CG-5730-01 22 18363991 18363991 G C MICAL3 Intron 0.10 TCGA-CG-5730-01 22 45914594 45914594 G A FBLN1 Missense_Mutation p.A38T 0.29 tolerated(0.56) probably_damaging(0.945) TCGA-CG-5730-01 2 101654162 101654162 G C TBC1D8 Silent p.L413L 0.30 TCGA-CG-5730-01 2 108999963 108999963 G A SULT1C4 Silent p.K204K 0.22 TCGA-CG-5730-01 2 111399257 111399257 C G BUB1 Missense_Mutation p.V863L 0.26 deleterious(0.04) benign(0.018) TCGA-CG-5730-01 2 112576471 112576471 A G ANAPC1 Missense_Mutation p.S1091P 0.21 deleterious(0) probably_damaging(0.959) TCGA-CG-5730-01 2 11720988 11720988 G T GREB1 Intron 0.24 TCGA-CG-5730-01 2 135848643 135848643 C T RAB3GAP1 Missense_Mutation p.H76Y 0.28 tolerated(0.45) benign(0.008) TCGA-CG-5730-01 2 136575399 136575399 C G LCT Missense_Mutation p.G407R 0.25 deleterious(0) probably_damaging(0.999) TCGA-CG-5730-01 2 141459402 141459402 G A LRP1B Silent p.N2105N 0.49 TCGA-CG-5730-01 2 175346609 175346609 G T GPR155 Missense_Mutation p.H26N 0.18 tolerated_low_confidence(0.16) benign(0) TCGA-CG-5730-01 2 179410279 179410279 C T TTN Missense_Mutation p.R31853H 0.03 TCGA-CG-5730-01 2 179456552 179456552 C T TTN Nonsense_Mutation p.W19998* 0.25 TCGA-CG-5730-01 2 179489303 179489303 C T TTN Missense_Mutation p.A14902T 0.48 TCGA-CG-5730-01 2 187490295 187490295 G T ITGAV Missense_Mutation p.E168D 0.32 deleterious(0) possibly_damaging(0.529) TCGA-CG-5730-01 2 220421289 220421289 G A OBSL1 Missense_Mutation p.A1408V 0.31 tolerated(0.39) benign(0.033) TCGA-CG-5730-01 2 234750099 234750099 G A HJURP Missense_Mutation p.R443W 0.21 deleterious(0) possibly_damaging(0.684) TCGA-CG-5730-01 2 28785965 28785965 C T PLB1 Missense_Mutation p.T402M 0.33 deleterious(0) probably_damaging(1) TCGA-CG-5730-01 2 3196198 3196198 G A TSSC1 Missense_Mutation p.R326C 0.32 deleterious(0.04) benign(0.063) TCGA-CG-5730-01 2 32399183 32399183 C T SLC30A6 Silent p.L48L 0.20 TCGA-CG-5730-01 2 49195900 49195900 A T FSHR Missense_Mutation p.L264H 0.12 deleterious(0) probably_damaging(1) TCGA-CG-5730-01 2 79364391 79364391 A T REG1P RNA 0.27 TCGA-CG-5730-01 2 97031660 97031660 C T NCAPH Missense_Mutation p.P582L 0.22 tolerated(0.22) benign(0.014) TCGA-CG-5730-01 3 10400407 10400407 C T ATP2B2 Missense_Mutation p.V702M 0.31 deleterious(0) probably_damaging(0.999) TCGA-CG-5730-01 3 108107879 108107879 T C MYH15 Missense_Mutation p.S1845G 0.06 tolerated(0.5) benign(0.14) TCGA-CG-5730-01 3 150480301 150480301 C T SIAH2 Silent p.P112P 0.29 TCGA-CG-5730-01 3 179525543 179525543 G A PEX5L Missense_Mutation p.T532M 0.29 tolerated(0.22) probably_damaging(0.993) TCGA-CG-5730-01 3 180359946 180359946 C T CCDC39 Missense_Mutation p.R570H 0.20 deleterious(0) probably_damaging(0.977) TCGA-CG-5730-01 3 42794186 42794186 C T CCDC13 Missense_Mutation p.V132M 0.39 tolerated(0.2) benign(0.018) TCGA-CG-5730-01 3 44611508 44611509 - G ZKSCAN7 Frame_Shift_Ins p.V304Gfs*13 0.30 TCGA-CG-5730-01 3 46062453 46062453 G A XCR1 Silent p.G329G 0.33 TCGA-CG-5730-01 3 52420183 52420183 C T DNAH1 Missense_Mutation p.T2878M 0.25 probably_damaging(0.982) TCGA-CG-5730-01 3 62467417 62467417 C T CADPS Missense_Mutation p.A1052T 0.33 tolerated(0.2) possibly_damaging(0.483) TCGA-CG-5730-01 3 74334622 74334623 - C CNTN3 Frame_Shift_Ins p.G847Wfs*8 0.27 TCGA-CG-5730-01 3 9704013 9704013 G A MTMR14 Missense_Mutation p.R124Q 0.55 deleterious(0) probably_damaging(0.945) TCGA-CG-5730-01 4 126411278 126411278 C T FAT4 Missense_Mutation p.P4434L 0.33 probably_damaging(0.999) TCGA-CG-5730-01 4 128807158 128807158 C T PLK4 Silent p.F211F 0.36 TCGA-CG-5730-01 4 20525651 20525651 A C SLIT2 Missense_Mutation p.N430T 0.31 deleterious(0) probably_damaging(0.995) TCGA-CG-5730-01 4 48578238 48578238 T A FRYL Missense_Mutation p.S844C 0.26 deleterious(0) probably_damaging(0.985) TCGA-CG-5730-01 4 5564562 5564562 T G EVC2 3'UTR 0.20 TCGA-CG-5730-01 4 98633896 98633896 C T STPG2 Missense_Mutation p.R425H 0.26 deleterious(0.01) possibly_damaging(0.749) TCGA-CG-5730-01 5 140175691 140175691 C T PCDHA2 Missense_Mutation p.T381M 0.82 deleterious_low_confidence(0) benign(0.247) TCGA-CG-5730-01 5 145894703 145894705 ATC - GPR151 In_Frame_Del p.M324del 0.54 TCGA-CG-5730-01 5 17275368 17275368 A T BASP1 Missense_Mutation p.N15Y 0.17 deleterious(0) unknown(0) TCGA-CG-5730-01 5 42629152 42629152 T A GHR Missense_Mutation p.I28N 0.37 tolerated_low_confidence(0.07) benign(0.075) TCGA-CG-5730-01 5 5237152 5237152 C T ADAMTS16 Silent p.V698V 0.04 TCGA-CG-5730-01 5 9227046 9227046 C A SEMA5A Missense_Mutation p.V123L 0.16 tolerated(0.1) possibly_damaging(0.512) TCGA-CG-5730-01 5 95748060 95748060 G A PCSK1 Missense_Mutation p.R282W 0.29 deleterious(0) probably_damaging(0.993) TCGA-CG-5730-01 5 96320901 96320901 C T LNPEP Silent p.T326T 0.31 TCGA-CG-5730-01 6 133595917 133595917 A G EYA4 5'UTR 0.05 TCGA-CG-5730-01 6 160543066 160543066 G A SLC22A1 Silent p.A33A 0.22 TCGA-CG-5730-01 6 163991799 163991799 C T QKI 3'UTR 0.19 TCGA-CG-5730-01 6 169051367 169051367 C T SMOC2 Missense_Mutation p.P316L 0.41 deleterious(0) probably_damaging(0.995) TCGA-CG-5730-01 6 18256032 18256032 C G DEK Missense_Mutation p.R168T 0.28 deleterious(0) probably_damaging(0.946) TCGA-CG-5730-01 6 26188949 26188949 G C HIST1H4D 3'UTR 0.25 TCGA-CG-5730-01 6 28227362 28227362 G A NKAPL Silent p.S71S 0.62 TCGA-CG-5730-01 6 32029299 32029299 C T TNXB Missense_Mutation p.R2456H 0.25 benign(0.005) TCGA-CG-5730-01 6 34214426 34214426 G A C6orf1 Silent p.A115A 0.20 TCGA-CG-5730-01 6 35466196 35466196 C T TULP1 Missense_Mutation p.A513T 0.25 tolerated(0.18) benign(0.363) TCGA-CG-5730-01 6 49976943 49976943 C T DEFB110 Missense_Mutation p.E33K 0.05 tolerated_low_confidence(0.69) benign(0.031) TCGA-CG-5730-01 6 69772895 69772895 G A BAI3 Silent p.S801S 0.30 TCGA-CG-5730-01 7 100454554 100454554 C T SLC12A9 Silent p.G171G 0.29 TCGA-CG-5730-01 7 107594141 107594141 C - LAMB1 Frame_Shift_Del p.S972Rfs*89 0.26 TCGA-CG-5730-01 7 111386415 111386415 C T DOCK4 Missense_Mutation p.R1542Q 0.32 tolerated(0.82) benign(0.012) TCGA-CG-5730-01 7 112129968 112129968 C T LSMEM1 Silent p.L120L 0.25 TCGA-CG-5730-01 7 141491098 141491098 C T TAS2R5 3'UTR 0.25 TCGA-CG-5730-01 7 142000777 142000777 G T TRBV2 5'UTR 0.57 TCGA-CG-5730-01 7 15425182 15425182 G A AGMO Silent p.T321T 0.23 TCGA-CG-5730-01 7 30544315 30544315 G T GGCT Nonsense_Mutation p.S4* 0.25 TCGA-CG-5730-01 7 42004251 42004251 C T GLI3 Missense_Mutation p.A1474T 0.25 tolerated(0.61) benign(0) TCGA-CG-5730-01 7 62753047 62753047 T C ZNF733P RNA 0.20 TCGA-CG-5730-01 7 66774084 66774084 G T STAG3L4 RNA 0.30 TCGA-CG-5730-01 7 73638356 73638356 C T LAT2 Nonsense_Mutation p.Q153* 0.26 TCGA-CG-5730-01 7 76140158 76140158 G A UPK3B Silent p.E63E 0.58 TCGA-CG-5730-01 7 97860371 97860371 C T TECPR1 Silent p.P728P 0.50 TCGA-CG-5730-01 7 98586497 98586497 C T TRRAP Missense_Mutation p.R3171W 0.34 probably_damaging(0.995) TCGA-CG-5730-01 8 114031299 114031299 G C CSMD3 Missense_Mutation p.Q343E 0.53 tolerated(0.11) benign(0.196) TCGA-CG-5730-01 8 141034153 141034153 G A TRAPPC9 Silent p.F958F 0.20 TCGA-CG-5730-01 8 49985432 49985432 C A C8orf22 Missense_Mutation p.Q15K 0.19 deleterious(0.01) probably_damaging(0.987) TCGA-CG-5730-01 8 73849466 73849466 G A KCNB2 Missense_Mutation p.A626T 0.44 tolerated_low_confidence(0.45) benign(0.021) TCGA-CG-5730-01 8 87470223 87470223 G A WWP1 Missense_Mutation p.R823K 0.06 tolerated(0.48) probably_damaging(0.996) TCGA-CG-5730-01 8 87656093 87656093 C T CNGB3 Missense_Mutation p.R355Q 0.22 deleterious(0.02) possibly_damaging(0.805) TCGA-CG-5730-01 9 123624899 123624899 G A PHF19 Missense_Mutation p.S366F 0.07 tolerated(0.67) benign(0.049) TCGA-CG-5730-01 9 125315995 125315995 G A OR1N2 Missense_Mutation p.V183M 0.49 deleterious(0.01) possibly_damaging(0.705) TCGA-CG-5730-01 9 20413763 20413763 G T MLLT3 Missense_Mutation p.P361T 0.69 tolerated(0.13) benign(0.417) TCGA-CG-5730-01 9 5185416 5185416 G A INSL6 Missense_Mutation p.R63W 0.74 deleterious(0.01) benign(0.293) TCGA-CG-5730-01 9 90500615 90500615 C T SPATA31E1 Missense_Mutation p.P405S 0.29 tolerated(0.68) benign(0.047) TCGA-CG-5730-01 X 111078194 111078194 C T TRPC5 Silent p.L617L 0.19 TCGA-CG-5730-01 X 11136637 11136637 G A HCCS Missense_Mutation p.E140K 0.16 deleterious(0.01) possibly_damaging(0.493) TCGA-CG-5730-01 X 137714902 137714902 G T FGF13 3'Flank 0.11 TCGA-CG-5730-01 X 140995050 140995050 A T MAGEC1 Missense_Mutation p.E620D 0.22 tolerated_low_confidence(1) benign(0) TCGA-CG-5730-01 X 142718454 142718454 C T SLITRK4 Silent p.L157L 0.17 TCGA-CG-5730-01 X 148037715 148037715 G C AFF2 Missense_Mutation p.D714H 0.40 deleterious(0) probably_damaging(0.999) TCGA-CG-5730-01 X 148798510 148798510 C T MAGEA11 3'UTR 0.18 TCGA-CG-5730-01 X 149641985 149641985 G A MAMLD1 Intron 0.23 TCGA-CG-5730-01 X 152482314 152482314 C A MAGEA1 Missense_Mutation p.G233W 0.23 deleterious(0.02) possibly_damaging(0.766) TCGA-CG-5730-01 X 154743754 154743754 C T TMLHE Silent p.L177L 0.07 TCGA-CG-5730-01 X 21609255 21609256 - A CNKSR2 Frame_Shift_Ins p.Y594Ifs*15 0.16 TCGA-CG-5730-01 X 26212461 26212461 T C MAGEB6 Silent p.Y166Y 0.19 TCGA-CG-5730-01 X 48372643 48372643 C T PORCN Silent p.Y245Y 0.36 TCGA-CG-5730-01 X 48652490 48652490 G T GATA1 Silent p.L387L 0.36 TCGA-CG-5730-01 X 54043133 54043133 C T PHF8 Missense_Mutation p.R200H 0.48 deleterious(0) possibly_damaging(0.652) TCGA-CG-5730-01 X 55479506 55479506 T A MAGEH1 3'UTR 0.26 TCGA-CG-5730-01 X 73507007 73507007 T G MIR545 RNA 0.25 TCGA-CG-5730-01 X 76939715 76939715 C T ATRX Missense_Mutation p.A345T 0.03 probably_damaging(0.995) TCGA-CG-5730-01 X 83576868 83576868 A T HDX 3'UTR 0.04 TCGA-CG-5732-01 10 104859733 104859733 G A NT5C2 Missense_Mutation p.R195W 0.20 deleterious(0.05) benign(0.014) TCGA-CG-5732-01 10 115963311 115963311 G C TDRD1 Missense_Mutation p.K322N 0.04 deleterious(0) probably_damaging(0.978) TCGA-CG-5732-01 10 132944909 132944909 G A TCERG1L Missense_Mutation p.T350M 0.16 deleterious(0) probably_damaging(0.999) TCGA-CG-5732-01 10 27400956 27400956 C G YME1L1 Missense_Mutation p.A758P 0.20 deleterious(0.01) benign(0.25) TCGA-CG-5732-01 10 64967507 64967507 G A JMJD1C Missense_Mutation p.R1308C 0.03 tolerated(0.07) probably_damaging(0.999) TCGA-CG-5732-01 11 107299860 107299860 A G CWF19L2 Silent p.A366A 0.20 TCGA-CG-5732-01 11 117059426 117059426 C T SIDT2 Missense_Mutation p.R388C 0.06 deleterious(0) possibly_damaging(0.9) TCGA-CG-5732-01 11 55541123 55541123 G T OR5D13 Missense_Mutation p.L70F 0.02 tolerated(1) benign(0.001) TCGA-CG-5732-01 11 60971605 60971605 T G PGA3 Missense_Mutation p.L28W 0.28 deleterious(0.01) benign(0.445) TCGA-CG-5732-01 11 8704279 8704279 A C RPL27A 5'UTR 0.07 TCGA-CG-5732-01 12 111785892 111785892 G T CUX2 Missense_Mutation p.M1408I 0.06 tolerated_low_confidence(0.09) benign(0.005) TCGA-CG-5732-01 12 41967067 41967067 A T PDZRN4 Missense_Mutation p.Y829F 0.09 deleterious(0.04) possibly_damaging(0.844) TCGA-CG-5732-01 12 55356738 55356738 A C TESPA1 Missense_Mutation p.V315G 0.28 deleterious(0) possibly_damaging(0.878) TCGA-CG-5732-01 13 20568054 20568054 A G ZMYM2 Missense_Mutation p.N281S 0.03 tolerated(0.78) benign(0.014) TCGA-CG-5732-01 13 31037926 31037929 TTAT - HMGB1 Intron 0.43 TCGA-CG-5732-01 14 101193435 101193435 C T DLK1 Silent p.V10V 0.33 TCGA-CG-5732-01 14 76245989 76245989 C A TTLL5 Missense_Mutation p.T820N 0.18 tolerated(0.06) possibly_damaging(0.889) TCGA-CG-5732-01 14 92471128 92471128 T G TRIP11 Missense_Mutation p.K1064N 0.03 deleterious(0) probably_damaging(0.992) TCGA-CG-5732-01 15 31776401 31776401 C A OTUD7A Missense_Mutation p.R626L 0.15 deleterious(0) probably_damaging(0.991) TCGA-CG-5732-01 15 43067923 43067923 T C TTBK2 Splice_Site p.X470_splice 0.31 TCGA-CG-5732-01 15 48788332 48788332 C T FBN1 Missense_Mutation p.G795E 0.06 probably_damaging(1) TCGA-CG-5732-01 16 23706580 23706580 C T ERN2 Missense_Mutation p.E629K 0.18 deleterious(0) probably_damaging(0.998) TCGA-CG-5732-01 16 4934484 4934484 C T PPL Missense_Mutation p.R1391Q 0.34 tolerated(0.72) benign(0.004) TCGA-CG-5732-01 17 37107867 37107867 G A FBXO47 Missense_Mutation p.R195C 0.38 deleterious(0) possibly_damaging(0.776) TCGA-CG-5732-01 17 58024163 58024163 T C RPS6KB1 3'UTR 0.11 TCGA-CG-5732-01 17 66899633 66899633 A G ABCA8 Silent p.A762A 0.03 TCGA-CG-5732-01 17 79278703 79278703 G A LINC00482 RNA 0.20 TCGA-CG-5732-01 18 61649024 61649024 G T SERPINB8 Nonsense_Mutation p.E126* 0.30 TCGA-CG-5732-01 19 38709248 38709248 C T DPF1 Missense_Mutation p.D188N 0.45 deleterious(0.04) benign(0.089) TCGA-CG-5732-01 19 49671854 49671854 C T TRPM4 Silent p.D219D 0.06 TCGA-CG-5732-01 1 12954419 12954419 G A PRAMEF10 Silent p.L288L 0.30 TCGA-CG-5732-01 1 152280076 152280076 C T FLG Missense_Mutation p.G2429E 0.27 probably_damaging(0.999) TCGA-CG-5732-01 1 152281163 152281163 G T FLG Missense_Mutation p.P2067T 0.09 possibly_damaging(0.641) TCGA-CG-5732-01 1 159175316 159175316 C A DARC Silent p.S31S 0.31 TCGA-CG-5732-01 1 180885845 180885845 G A KIAA1614 Silent p.L202L 0.28 TCGA-CG-5732-01 1 229737813 229737813 C G TAF5L Intron 0.17 TCGA-CG-5732-01 1 237947621 237947621 G T RYR2 Silent p.A4203A 0.04 TCGA-CG-5732-01 1 39877376 39877377 - A KIAA0754 Frame_Shift_Ins p.T345Nfs*5 0.22 TCGA-CG-5732-01 20 31395813 31395813 G A DNMT3B 3'UTR 0.15 TCGA-CG-5732-01 20 45839356 45839356 G A ZMYND8 3'Flank 0.04 TCGA-CG-5732-01 20 48732031 48732031 G T UBE2V1 Missense_Mutation p.H28N 0.09 tolerated_low_confidence(0.1) benign(0.002) TCGA-CG-5732-01 20 51872060 51872060 C A TSHZ2 Missense_Mutation p.A688D 0.07 tolerated(0.07) benign(0.002) TCGA-CG-5732-01 21 32617948 32617948 G A TIAM1 Silent p.D480D 0.32 TCGA-CG-5732-01 21 38538093 38538093 G C TTC3 Missense_Mutation p.E1193Q 0.10 deleterious(0.01) benign(0.429) TCGA-CG-5732-01 22 39122390 39122390 G A GTPBP1 Missense_Mutation p.R449H 0.05 deleterious(0) probably_damaging(0.999) TCGA-CG-5732-01 2 141283892 141283892 C T LRP1B Missense_Mutation p.R2597H 0.17 possibly_damaging(0.812) TCGA-CG-5732-01 2 167055546 167055546 A C SCN9A Missense_Mutation p.M1857R 0.07 deleterious(0) possibly_damaging(0.873) TCGA-CG-5732-01 2 170060760 170060760 A C LRP2 Silent p.T2579T 0.05 TCGA-CG-5732-01 2 179654210 179654210 G A TTN Silent p.A651A 0.29 TCGA-CG-5732-01 2 231067427 231067427 G A SP110 Missense_Mutation p.H306Y 0.27 tolerated(0.15) unknown(0) TCGA-CG-5732-01 2 49295370 49295370 T C FSHR Missense_Mutation p.D71G 0.06 tolerated(0.38) benign(0.002) TCGA-CG-5732-01 2 56420153 56420153 C G CCDC85A Missense_Mutation p.A273G 0.15 tolerated_low_confidence(0.64) benign(0.11) TCGA-CG-5732-01 3 121648191 121648191 G A SLC15A2 Missense_Mutation p.V517M 0.11 deleterious(0.04) benign(0.085) TCGA-CG-5732-01 3 175473204 175473204 T C NAALADL2 Silent p.Y729Y 0.23 TCGA-CG-5732-01 3 48448490 48448490 C T PLXNB1 Silent p.P2032P 0.05 TCGA-CG-5732-01 3 55107475 55107475 C G CACNA2D3 Silent p.S997S 0.27 TCGA-CG-5732-01 4 103747782 103747782 A T UBE2D3 Intron 0.13 TCGA-CG-5732-01 4 96761832 96761832 G A PDHA2 Silent p.L177L 0.11 TCGA-CG-5732-01 5 111601943 111601943 C T EPB41L4A Silent p.A140A 0.51 TCGA-CG-5732-01 5 132272875 132272875 G A AFF4 Missense_Mutation p.R3C 0.18 deleterious_low_confidence(0) possibly_damaging(0.636) TCGA-CG-5732-01 5 142689712 142689712 C A NR3C1 Missense_Mutation p.C474F 0.11 deleterious(0) probably_damaging(1) TCGA-CG-5732-01 5 147475439 147475440 - A SPINK5 Frame_Shift_Ins p.T287Nfs*2 0.26 TCGA-CG-5732-01 5 153833058 153833058 G A SAP30L Missense_Mutation p.E141K 0.27 deleterious(0.03) possibly_damaging(0.877) TCGA-CG-5732-01 5 171305130 171305130 A G FBXW11 Missense_Mutation p.W265R 0.20 deleterious(0) probably_damaging(0.985) TCGA-CG-5732-01 5 72178338 72178338 A G TNPO1 Missense_Mutation p.D322G 0.02 deleterious(0) probably_damaging(0.937) TCGA-CG-5732-01 5 76249963 76249963 C T CRHBP Silent p.I95I 0.16 TCGA-CG-5732-01 6 31729612 31729612 G A MSH5 Silent p.E734E 0.08 TCGA-CG-5732-01 7 121608163 121608163 A C PTPRZ1 Missense_Mutation p.I95L 0.06 deleterious(0.01) probably_damaging(0.994) TCGA-CG-5732-01 7 77998505 77998505 G A MAGI2 Silent p.I357I 0.32 TCGA-CG-5732-01 7 91864762 91864762 A G KRIT1 Silent p.C228C 0.08 TCGA-CG-5732-01 7 99956991 99956991 C T PILRB Silent p.S162S 0.06 TCGA-CG-5732-01 8 10623284 10623284 G A PINX1 Missense_Mutation p.T205M 0.05 deleterious(0.02) possibly_damaging(0.874) TCGA-CG-5732-01 8 113276010 113276010 A G CSMD3 Silent p.S3240S 0.03 TCGA-CG-5732-01 8 116426974 116426974 A C TRPS1 Missense_Mutation p.S1054R 0.06 deleterious_low_confidence(0) possibly_damaging(0.795) TCGA-CG-5732-01 8 42611522 42611522 G A CHRNA6 Missense_Mutation p.L274F 0.04 deleterious(0) probably_damaging(1) TCGA-CG-5732-01 9 140437210 140437210 T G PNPLA7 Missense_Mutation p.K184Q 0.06 deleterious(0.03) possibly_damaging(0.691) TCGA-CG-5732-01 9 8518230 8518230 C T PTPRD Silent p.S387S 0.18 TCGA-CG-5732-01 X 118767373 118767373 C T SEPT6 Missense_Mutation p.V347I 0.42 tolerated(0.06) probably_damaging(0.987) TCGA-CG-5732-01 X 120182259 120182259 G A GLUD2 Missense_Mutation p.A241T 0.17 tolerated(0.13) benign(0.123) TCGA-CG-5732-01 X 1743214 1743214 G A ASMT Silent p.P99P 0.34 TCGA-CG-5732-01 X 65476001 65476001 G T HEPH Nonsense_Mutation p.E963* 0.08 TCGA-CG-5732-01 X 66941727 66941727 C A AR Missense_Mutation p.L791I 0.05 tolerated(0.39) possibly_damaging(0.673) TCGA-CG-5733-01 10 100155183 100155183 G A PYROXD2 Nonsense_Mutation p.R218* 0.17 TCGA-CG-5733-01 10 100219428 100219428 C T HPSE2 Missense_Mutation p.R561H 0.34 deleterious(0) possibly_damaging(0.891) TCGA-CG-5733-01 10 102247505 102247505 C A SEC31B Silent p.V1136V 0.22 TCGA-CG-5733-01 10 102763814 102763814 C T LZTS2 Missense_Mutation p.S320L 0.33 deleterious(0.02) benign(0.031) TCGA-CG-5733-01 10 103900371 103900371 G - PPRC1 Frame_Shift_Del p.G704Vfs*30 0.23 TCGA-CG-5733-01 10 108389108 108389108 G A SORCS1 Silent p.G838G 0.19 TCGA-CG-5733-01 10 115348747 115348747 G C NRAP Missense_Mutation p.A1727G 0.30 tolerated_low_confidence(0.17) benign(0.001) TCGA-CG-5733-01 10 116603550 116603550 T C FAM160B1 Silent p.S289S 0.20 TCGA-CG-5733-01 10 120797783 120797784 TC - EIF3A Frame_Shift_Del p.D1232Cfs*11 0.15 TCGA-CG-5733-01 10 123974941 123974943 CTC - TACC2 In_Frame_Del p.P2441del 0.31 TCGA-CG-5733-01 10 124266334 124266334 G A HTRA1 Missense_Mutation p.R302Q 0.43 deleterious(0) probably_damaging(1) TCGA-CG-5733-01 10 124457494 124457495 - T C10orf120 Frame_Shift_Ins p.C255Mfs*8 0.30 TCGA-CG-5733-01 10 124648172 124648172 C T RP11-564D11.3 RNA 0.11 TCGA-CG-5733-01 10 126691672 126691672 A G CTBP2 Missense_Mutation p.V612A 0.31 deleterious(0.02) probably_damaging(0.971) TCGA-CG-5733-01 10 127530280 127530280 A - BCCIP Intron 0.27 TCGA-CG-5733-01 10 129903109 129903109 G A MKI67 Missense_Mutation p.T2332M 0.35 tolerated(0.51) benign(0.001) TCGA-CG-5733-01 10 131334634 131334634 G A MGMT Missense_Mutation p.A71T 0.24 tolerated(0.56) benign(0.268) TCGA-CG-5733-01 10 134595384 134595384 G A INPP5A Missense_Mutation p.R393Q 0.21 tolerated(0.11) possibly_damaging(0.602) TCGA-CG-5733-01 10 14890639 14890639 G A HSPA14 Missense_Mutation p.A85T 0.30 tolerated(0.55) benign(0.002) TCGA-CG-5733-01 10 18828395 18828395 C A CACNB2 Silent p.S575S 0.26 TCGA-CG-5733-01 10 25313576 25313576 G A THNSL1 Missense_Mutation p.R475Q 0.30 deleterious(0.04) probably_damaging(0.981) TCGA-CG-5733-01 10 294978 294978 C T ZMYND11 Silent p.L546L 0.33 TCGA-CG-5733-01 10 30315526 30315526 C T KIAA1462 Missense_Mutation p.S1184N 0.21 tolerated(0.09) possibly_damaging(0.809) TCGA-CG-5733-01 10 33137556 33137556 G A C10ORF68 Missense_Mutation p.V512I 0.27 tolerated(0.88) benign(0) TCGA-CG-5733-01 10 43088863 43088863 A G ZNF33B Missense_Mutation p.L512P 0.27 deleterious(0) probably_damaging(1) TCGA-CG-5733-01 10 43622073 43622073 C T RET Silent p.D1030D 0.03 TCGA-CG-5733-01 10 47943647 47943647 G T FAM21B Missense_Mutation p.G924C 0.30 deleterious(0) probably_damaging(0.999) TCGA-CG-5733-01 10 5008192 5008192 T C AKR1C1 Silent p.N57N 0.34 TCGA-CG-5733-01 10 50530853 50530853 A G C10orf71 Missense_Mutation p.Q88R 0.18 tolerated(0.18) probably_damaging(0.999) TCGA-CG-5733-01 10 51465087 51465087 C T AGAP7 Missense_Mutation p.V457M 0.29 deleterious(0) probably_damaging(0.992) TCGA-CG-5733-01 10 55582989 55582989 G A PCDH15 Silent p.D1501D 0.34 TCGA-CG-5733-01 10 64159513 64159513 A - ZNF365 Intron 0.37 TCGA-CG-5733-01 10 64958470 64958470 T - JMJD1C Frame_Shift_Del p.N1765Tfs*3 0.17 TCGA-CG-5733-01 10 69959203 69959203 C A MYPN Missense_Mutation p.L1122M 0.19 deleterious(0) probably_damaging(1) TCGA-CG-5733-01 10 70191618 70191618 C T DNA2 Splice_Site p.X747_splice 0.21 TCGA-CG-5733-01 10 70644505 70644505 G A STOX1 Missense_Mutation p.R318H 0.22 deleterious(0) probably_damaging(0.999) TCGA-CG-5733-01 10 72299395 72299395 C T PALD1 Silent p.P595P 0.17 TCGA-CG-5733-01 10 74033961 74033961 C T DDIT4 5'UTR 0.17 TCGA-CG-5733-01 10 75574930 75574930 G A CAMK2G Missense_Mutation p.A505V 0.32 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-CG-5733-01 10 75864868 75864868 A - VCL Frame_Shift_Del p.D733Tfs*7 0.24 TCGA-CG-5733-01 10 7618675 7618675 G A ITIH5 Silent p.I573I 0.19 TCGA-CG-5733-01 10 78651453 78651453 T C KCNMA1 Missense_Mutation p.T1041A 0.27 tolerated(0.34) probably_damaging(0.985) TCGA-CG-5733-01 10 82039973 82039973 G A MAT1A Missense_Mutation p.R169C 0.22 deleterious(0) benign(0.091) TCGA-CG-5733-01 10 86001143 86001144 - G LRIT1 Frame_Shift_Ins p.Q18Pfs*19 0.31 TCGA-CG-5733-01 10 88651973 88651974 - T BMPR1A Frame_Shift_Ins p.Q109Sfs*23 0.18 TCGA-CG-5733-01 10 890939 890939 T - LARP4B Frame_Shift_Del p.T163Hfs*47 0.29 TCGA-CG-5733-01 10 91162510 91162510 G A IFIT1 Missense_Mutation p.A160T 0.17 deleterious(0) probably_damaging(0.997) TCGA-CG-5733-01 10 91203598 91203598 A - SLC16A12 Frame_Shift_Del p.F73Lfs*22 0.23 TCGA-CG-5733-01 10 91343951 91343951 A - PANK1 3'UTR 0.47 TCGA-CG-5733-01 10 91403496 91403498 AAG - PANK1 Intron 0.20 TCGA-CG-5733-01 10 93667912 93667912 G A FGFBP3 3'UTR 0.35 TCGA-CG-5733-01 10 93756173 93756173 T C BTAF1 Silent p.S1119S 0.13 TCGA-CG-5733-01 10 96609690 96609690 C T CYP2C19 Missense_Mutation p.T389I 0.04 tolerated(0.17) benign(0.03) TCGA-CG-5733-01 10 96609804 96609804 C G CYP2C19 Missense_Mutation p.P427R 0.16 deleterious(0) probably_damaging(0.986) TCGA-CG-5733-01 10 97096319 97096319 C T SORBS1 Missense_Mutation p.E1200K 0.22 tolerated_low_confidence(0.27) benign(0.004) TCGA-CG-5733-01 10 97918856 97918856 A - ZNF518A RNA 0.53 TCGA-CG-5733-01 10 99422723 99422723 C T PI4K2A Missense_Mutation p.R298W 0.43 deleterious(0.01) possibly_damaging(0.892) TCGA-CG-5733-01 10 99625339 99625339 G A CRTAC1 Missense_Mutation p.S651L 0.34 deleterious_low_confidence(0) benign(0.32) TCGA-CG-5733-01 11 102650394 102650395 - T MMP10 Frame_Shift_Ins p.I63Nfs*19 0.25 TCGA-CG-5733-01 11 104878019 104878019 A G CASP5 Missense_Mutation p.L88P 0.24 deleterious(0.01) probably_damaging(0.916) TCGA-CG-5733-01 11 105483240 105483240 A T GRIA4 Intron 0.26 TCGA-CG-5733-01 11 107427670 107427670 C T ALKBH8 Silent p.P63P 0.30 TCGA-CG-5733-01 11 108811067 108811067 G T DDX10 Missense_Mutation p.D849Y 0.09 deleterious(0.01) benign(0.44) TCGA-CG-5733-01 11 1093743 1093743 T C MUC2 Silent p.P1854P 0.25 TCGA-CG-5733-01 11 111953316 111953316 A - C11orf57 Frame_Shift_Del p.K169Nfs*12 0.29 TCGA-CG-5733-01 11 114278448 114278448 G T RBM7 Missense_Mutation p.R240S 0.25 deleterious(0.02) possibly_damaging(0.548) TCGA-CG-5733-01 11 116655132 116655132 C T ZNF259 Missense_Mutation p.A285T 0.30 deleterious(0) probably_damaging(0.999) TCGA-CG-5733-01 11 117152818 117152818 G A RNF214 Missense_Mutation p.G515D 0.31 deleterious(0.01) possibly_damaging(0.854) TCGA-CG-5733-01 11 118038845 118038845 G A SCN2B Missense_Mutation p.R135C 0.25 tolerated(0.05) probably_damaging(1) TCGA-CG-5733-01 11 118765004 118765004 C T CXCR5 Missense_Mutation p.R251C 0.22 deleterious(0.02) probably_damaging(0.996) TCGA-CG-5733-01 11 118918525 118918526 - C HYOU1 Frame_Shift_Ins p.A839Gfs*13 0.26 TCGA-CG-5733-01 11 118951928 118951928 T C VPS11 Silent p.A854A 0.24 TCGA-CG-5733-01 11 119155727 119155727 C - CBL Frame_Shift_Del p.P495Rfs*120 0.22 TCGA-CG-5733-01 11 120097609 120097609 G T OAF Missense_Mutation p.G151W 0.29 deleterious(0) probably_damaging(0.98) TCGA-CG-5733-01 11 12284142 12284142 G A MICAL2 Intron 0.35 TCGA-CG-5733-01 11 122848567 122848567 C T BSX Silent p.K164K 0.17 TCGA-CG-5733-01 11 123847892 123847892 G A OR10S1 Silent p.H169H 0.27 TCGA-CG-5733-01 11 123988930 123988930 G A VWA5A Missense_Mutation p.G94D 0.27 deleterious(0) probably_damaging(0.997) TCGA-CG-5733-01 11 124135700 124135700 C T OR8G5 Silent p.S326S 0.29 TCGA-CG-5733-01 11 124294398 124294398 C T OR8B4 Missense_Mutation p.A124T 0.28 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-CG-5733-01 11 124745497 124745497 G - ROBO3 Frame_Shift_Del p.G781Vfs*223 0.28 TCGA-CG-5733-01 11 125778397 125778397 A G DDX25 Missense_Mutation p.Q169R 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-CG-5733-01 11 126306785 126306785 G A KIRREL3 Silent p.A491A 0.25 TCGA-CG-5733-01 11 1265530 1265530 G A MUC5B Missense_Mutation p.V2474M 0.21 unknown(0) TCGA-CG-5733-01 11 1266053 1266053 C - MUC5B Frame_Shift_Del p.S2650Pfs*13 0.17 TCGA-CG-5733-01 11 1267481 1267481 C - MUC5B Frame_Shift_Del p.S3126Pfs*13 0.28 TCGA-CG-5733-01 11 1271471 1271472 GC - MUC5B Frame_Shift_Del p.S4454Nfs*216 0.19 TCGA-CG-5733-01 11 130013273 130013273 A G APLP2 Missense_Mutation p.H741R 0.28 deleterious(0) probably_damaging(0.999) TCGA-CG-5733-01 11 130278368 130278368 G A ADAMTS8 Missense_Mutation p.T697I 0.24 deleterious(0.02) benign(0.093) TCGA-CG-5733-01 11 134037945 134037945 G A NCAPD3 Silent p.D1173D 0.28 TCGA-CG-5733-01 11 134104900 134104900 C T VPS26B Silent p.H111H 0.22 TCGA-CG-5733-01 11 134131231 134131231 C T ACAD8 Missense_Mutation p.R302W 0.23 deleterious(0) probably_damaging(1) TCGA-CG-5733-01 11 14880754 14880754 A - PDE3B Frame_Shift_Del p.K897Sfs*16 0.24 TCGA-CG-5733-01 11 17113183 17113183 T C PIK3C2A Missense_Mutation p.T1555A 0.23 tolerated(0.37) benign(0.007) TCGA-CG-5733-01 11 17333455 17333455 T C NUCB2 Missense_Mutation p.L266S 0.27 deleterious(0) probably_damaging(0.997) TCGA-CG-5733-01 11 17351800 17351800 C T NUCB2 Missense_Mutation p.R377C 0.30 deleterious(0) possibly_damaging(0.776) TCGA-CG-5733-01 11 18231889 18231889 G A RP11-113D6.10 3'UTR 0.10 TCGA-CG-5733-01 11 18291466 18291466 C T SAA1 3'UTR 0.34 TCGA-CG-5733-01 11 20112451 20112451 C T NAV2 Nonsense_Mutation p.Q1906* 0.14 TCGA-CG-5733-01 11 22387120 22387120 T G SLC17A6 Missense_Mutation p.F259C 0.31 deleterious(0.02) benign(0.125) TCGA-CG-5733-01 11 27679623 27679623 C T BDNF Silent p.T245T 0.29 TCGA-CG-5733-01 11 279855 279855 C T NLRP6 Missense_Mutation p.T111M 0.36 deleterious(0.02) benign(0.084) TCGA-CG-5733-01 11 2950458 2950458 C G PHLDA2 Missense_Mutation p.R46P 0.33 deleterious(0) benign(0.017) TCGA-CG-5733-01 11 31477872 31477872 T C IMMP1L Missense_Mutation p.I86V 0.38 tolerated(0.52) benign(0.01) TCGA-CG-5733-01 11 31822302 31822302 C T PAX6 Missense_Mutation p.G168R 0.29 tolerated(0.06) benign(0.001) TCGA-CG-5733-01 11 32456481 32456481 G A WT1 Silent p.H137H 0.30 TCGA-CG-5733-01 11 36298658 36298658 G A COMMD9 Silent p.T111T 0.29 TCGA-CG-5733-01 11 36512014 36512014 C T TRAF6 Missense_Mutation p.E315K 0.25 deleterious(0.02) probably_damaging(0.991) TCGA-CG-5733-01 11 3849105 3849105 C T RHOG Silent p.P88P 0.38 TCGA-CG-5733-01 11 44072905 44072905 G A ACCSL Missense_Mutation p.R219Q 0.25 tolerated(0.28) benign(0.041) TCGA-CG-5733-01 11 4510990 4510990 C A OR52K1 Missense_Mutation p.P287H 0.07 deleterious(0.01) benign(0.247) TCGA-CG-5733-01 11 45992812 45992812 A T PHF21A Missense_Mutation p.I156N 0.24 deleterious(0) probably_damaging(0.929) TCGA-CG-5733-01 11 4615836 4615836 A G OR52I1 Missense_Mutation p.R190G 0.25 deleterious(0) benign(0.158) TCGA-CG-5733-01 11 4674217 4674217 G - OR51E1 Frame_Shift_Del p.A156Lfs*3 0.29 TCGA-CG-5733-01 11 47689154 47689154 A C AGBL2 Missense_Mutation p.M770R 0.31 tolerated(0.33) benign(0.002) TCGA-CG-5733-01 11 47776215 47776215 G A FNBP4 Silent p.G105G 0.29 TCGA-CG-5733-01 11 47828647 47828648 AG - NUP160 Frame_Shift_Del p.S807Wfs*7 0.22 TCGA-CG-5733-01 11 5079943 5079943 C A OR52E2 Missense_Mutation p.K305N 0.26 tolerated(0.1) benign(0.004) TCGA-CG-5733-01 11 55860815 55860815 T C OR8I2 Missense_Mutation p.V11A 0.29 tolerated(0.05) benign(0.014) TCGA-CG-5733-01 11 55890135 55890135 G A OR8H3 Missense_Mutation p.G96D 0.28 deleterious(0.02) benign(0.078) TCGA-CG-5733-01 11 55944530 55944530 C T OR5J2 Missense_Mutation p.T146I 0.26 tolerated(0.6) benign(0.004) TCGA-CG-5733-01 11 55999773 55999773 T C OR5T2 Missense_Mutation p.M297V 0.27 deleterious(0.02) benign(0.271) TCGA-CG-5733-01 11 57369521 57369521 C A SERPING1 Missense_Mutation p.N188K 0.22 tolerated(0.25) benign(0.036) TCGA-CG-5733-01 11 57995679 57995679 G A OR10Q1 Silent p.Y223Y 0.23 TCGA-CG-5733-01 11 58892216 58892216 T G FAM111B Missense_Mutation p.L216V 0.29 tolerated(0.05) benign(0.257) TCGA-CG-5733-01 11 59368824 59368824 A G OSBP Silent p.D352D 0.28 TCGA-CG-5733-01 11 618899 618900 - G CDHR5 Frame_Shift_Ins p.G554Rfs*161 0.31 TCGA-CG-5733-01 11 62284419 62284419 T C AHNAK Missense_Mutation p.T5824A 0.27 probably_damaging(0.997) TCGA-CG-5733-01 11 6231598 6231598 C T C11orf42 Silent p.C197C 0.33 TCGA-CG-5733-01 11 62445451 62445451 G A UBXN1 Missense_Mutation p.R144C 0.31 deleterious(0) probably_damaging(0.909) TCGA-CG-5733-01 11 62677433 62677433 C T CHRM1 Silent p.P380P 0.30 TCGA-CG-5733-01 11 63177451 63177451 G A SLC22A9 3'UTR 0.24 TCGA-CG-5733-01 11 63256439 63256439 A G HRASLS5 Silent p.A93A 0.33 TCGA-CG-5733-01 11 63680357 63680357 T A RCOR2 Silent p.P318P 0.30 TCGA-CG-5733-01 11 63884462 63884462 C T FLRT1 Silent p.D241D 0.33 TCGA-CG-5733-01 11 64087315 64087315 G T PRDX5 Missense_Mutation p.G94V 0.03 deleterious(0) probably_damaging(0.999) TCGA-CG-5733-01 11 64132907 64132907 C - RPS6KA4 Frame_Shift_Del p.P349Hfs*26 0.27 TCGA-CG-5733-01 11 64621945 64621945 C T EHD1 Missense_Mutation p.D489N 0.32 deleterious(0) probably_damaging(0.999) TCGA-CG-5733-01 11 6478040 6478040 G A TRIM3 Missense_Mutation p.R306W 0.25 deleterious(0) probably_damaging(0.999) TCGA-CG-5733-01 11 65298178 65298178 C T SCYL1 Missense_Mutation p.R310W 0.26 deleterious(0) possibly_damaging(0.881) TCGA-CG-5733-01 11 65396147 65396147 G A PCNXL3 Missense_Mutation p.A1262T 0.33 deleterious(0) probably_damaging(0.995) TCGA-CG-5733-01 11 66033664 66033664 C - KLC2 Frame_Shift_Del p.Q570Rfs*8 0.31 TCGA-CG-5733-01 11 6638584 6638584 C T TPP1 Silent p.R152R 0.24 TCGA-CG-5733-01 11 67225877 67225877 G T CABP4 Silent p.A229A 0.26 TCGA-CG-5733-01 11 67766761 67766761 T C UNC93B1 Missense_Mutation p.Y190C 0.27 deleterious(0) probably_damaging(0.996) TCGA-CG-5733-01 11 68696803 68696803 C - IGHMBP2 Frame_Shift_Del p.T407Pfs*16 0.24 TCGA-CG-5733-01 11 68747812 68747812 T C MRGPRD Missense_Mutation p.Q215R 0.24 tolerated(1) benign(0.027) TCGA-CG-5733-01 11 68822754 68822754 C A TPCN2 Silent p.P121P 0.28 TCGA-CG-5733-01 11 69513976 69513976 G A FGF19 3'UTR 0.24 TCGA-CG-5733-01 11 71293816 71293816 C - KRTAP5-11 Frame_Shift_Del p.G23Afs*148 0.23 TCGA-CG-5733-01 11 72712093 72712093 T - FCHSD2 Frame_Shift_Del p.N110Tfs*10 0.25 TCGA-CG-5733-01 11 72945082 72945082 G T P2RY2 5'UTR 0.50 TCGA-CG-5733-01 11 75160160 75160160 C A GDPD5 Missense_Mutation p.Q192H 0.40 deleterious(0.01) probably_damaging(0.99) TCGA-CG-5733-01 11 800567 800567 C T PIDD Missense_Mutation p.E673K 0.21 deleterious(0) probably_damaging(0.999) TCGA-CG-5733-01 11 93148249 93148249 C A CCDC67 Missense_Mutation p.P536H 0.26 deleterious(0.03) possibly_damaging(0.626) TCGA-CG-5733-01 12 101017470 101017470 A - GAS2L3 Frame_Shift_Del p.G298Efs*20 0.25 TCGA-CG-5733-01 12 101693522 101693522 A G UTP20 Missense_Mutation p.D498G 0.24 deleterious(0.04) benign(0.005) TCGA-CG-5733-01 12 109017078 109017078 C T SELPLG Missense_Mutation p.V352M 0.31 deleterious(0) probably_damaging(0.998) TCGA-CG-5733-01 12 110032921 110032921 G A MVK Missense_Mutation p.R325H 0.28 tolerated(1) benign(0) TCGA-CG-5733-01 12 111348947 111348947 G A MYL2 Silent p.D145D 0.28 TCGA-CG-5733-01 12 111907981 111907981 C T ATXN2 Missense_Mutation p.A1083T 0.28 possibly_damaging(0.686) TCGA-CG-5733-01 12 111990178 111990178 C T ATXN2 Silent p.P319P 0.29 TCGA-CG-5733-01 12 112674831 112674831 G A HECTD4 Nonsense_Mutation p.R1642* 0.29 TCGA-CG-5733-01 12 112926888 112926888 G T PTPN11 Missense_Mutation p.G503V 0.25 deleterious(0) probably_damaging(1) TCGA-CG-5733-01 12 1137726 1137726 G T ERC1 Missense_Mutation p.Q219H 0.37 tolerated(0.43) probably_damaging(0.93) TCGA-CG-5733-01 12 118841254 118841254 C T SUDS3 Silent p.P245P 0.13 TCGA-CG-5733-01 12 120106123 120106124 - G PRKAB1 Frame_Shift_Ins p.T28Hfs*39 0.17 TCGA-CG-5733-01 12 123187766 123187766 C T HCAR2 Missense_Mutation p.R22Q 0.28 tolerated(0.26) benign(0.004) TCGA-CG-5733-01 12 124144856 124144856 A - GTF2H3 3'UTR 0.11 TCGA-CG-5733-01 12 124315113 124315113 A - DNAH10 Frame_Shift_Del p.T1355Rfs*7 0.23 TCGA-CG-5733-01 12 124950800 124950800 G A NCOR2 Silent p.P208P 0.25 TCGA-CG-5733-01 12 12514140 12514140 T C LOH12CR1 Missense_Mutation p.V20A 0.24 tolerated(0.93) benign(0) TCGA-CG-5733-01 12 12630724 12630724 T C DUSP16 Silent p.S347S 0.07 TCGA-CG-5733-01 12 12974263 12974263 T C DDX47 Silent p.T101T 0.28 TCGA-CG-5733-01 12 12974623 12974623 A G DDX47 Silent p.Q135Q 0.30 TCGA-CG-5733-01 12 130184705 130184705 G - TMEM132D Frame_Shift_Del p.T207Rfs*75 0.36 TCGA-CG-5733-01 12 132474611 132474611 G A EP400 Missense_Mutation p.A838T 0.33 unknown(0) TCGA-CG-5733-01 12 132624231 132624231 C T DDX51 Silent p.P641P 0.24 TCGA-CG-5733-01 12 15091448 15091448 C A ERP27 5'UTR 0.17 TCGA-CG-5733-01 12 27455095 27455097 GAA - STK38L In_Frame_Del p.E56del 0.20 TCGA-CG-5733-01 12 27908478 27908478 T - MRPS35 3'UTR 0.29 TCGA-CG-5733-01 12 31136068 31136068 G A TSPAN11 Missense_Mutation p.G229R 0.20 deleterious(0.02) possibly_damaging(0.879) TCGA-CG-5733-01 12 32897883 32897883 T - DNM1L 3'Flank 0.29 TCGA-CG-5733-01 12 33535371 33535371 G T SYT10 Missense_Mutation p.P428H 0.25 deleterious(0) probably_damaging(1) TCGA-CG-5733-01 12 42499815 42499816 - A GXYLT1 Frame_Shift_Ins p.L223Ffs*5 0.21 TCGA-CG-5733-01 12 44139909 44139909 T - PUS7L Frame_Shift_Del p.K401Nfs*3 0.20 TCGA-CG-5733-01 12 4553334 4553334 C T FGF6 Missense_Mutation p.V139I 0.20 tolerated(0.14) benign(0.004) TCGA-CG-5733-01 12 46211518 46211518 G T ARID2 Missense_Mutation p.V162L 0.23 tolerated(0.09) probably_damaging(0.926) TCGA-CG-5733-01 12 46215214 46215214 T - ARID2 Frame_Shift_Del p.S218Pfs*74 0.23 TCGA-CG-5733-01 12 46761057 46761057 A G SLC38A2 Silent p.N127N 0.05 TCGA-CG-5733-01 12 47630075 47630075 C T PCED1B Missense_Mutation p.T410M 0.29 tolerated(0.15) benign(0) TCGA-CG-5733-01 12 48723422 48723422 C T H1FNT Silent p.A116A 0.36 TCGA-CG-5733-01 12 50186659 50186659 G A NCKAP5L Missense_Mutation p.R1151W 0.29 deleterious(0) probably_damaging(0.993) TCGA-CG-5733-01 12 5021140 5021140 C T KCNA1 Missense_Mutation p.T199M 0.25 tolerated(0.15) benign(0.007) TCGA-CG-5733-01 12 50615953 50615953 T - LIMA1 Frame_Shift_Del p.M161Wfs*5 0.27 TCGA-CG-5733-01 12 51856144 51856144 G A SLC4A8 Silent p.A384A 0.32 TCGA-CG-5733-01 12 520943 520943 C T CCDC77 Silent p.A23A 0.24 TCGA-CG-5733-01 12 52379121 52379121 G - ACVR1B Frame_Shift_Del p.T418Pfs*16 0.16 TCGA-CG-5733-01 12 52385715 52385715 C T ACVR1B Nonsense_Mutation p.R485* 0.27 TCGA-CG-5733-01 12 52470862 52470862 T C C12orf44 Missense_Mutation p.L182S 0.30 deleterious(0) possibly_damaging(0.737) TCGA-CG-5733-01 12 52881626 52881626 C A KRT6A Missense_Mutation p.G525C 0.24 tolerated(0.1) unknown(0) TCGA-CG-5733-01 12 53227574 53227574 G A KRT79 Silent p.I157I 0.29 TCGA-CG-5733-01 12 53565712 53565712 C T CSAD Silent p.L162L 0.28 TCGA-CG-5733-01 12 54379619 54379619 G - HOXC10 Frame_Shift_Del p.G194Afs*3 0.20 TCGA-CG-5733-01 12 54812816 54812816 G A ITGA5 Missense_Mutation p.P56L 0.35 tolerated(0.08) benign(0.001) TCGA-CG-5733-01 12 55863619 55863619 A - OR6C70 Frame_Shift_Del p.Y102Tfs*12 0.28 TCGA-CG-5733-01 12 56222358 56222358 C T DNAJC14 Missense_Mutation p.V29M 0.27 deleterious_low_confidence(0) benign(0.21) TCGA-CG-5733-01 12 56355192 56355192 A G PMEL Silent p.N81N 0.09 TCGA-CG-5733-01 12 56527633 56527633 C T ESYT1 Silent p.Y483Y 0.29 TCGA-CG-5733-01 12 56717366 56717366 A G PAN2 Missense_Mutation p.I734T 0.22 deleterious(0.01) probably_damaging(0.915) TCGA-CG-5733-01 12 56868363 56868363 C T GLS2 Missense_Mutation p.G397S 0.28 deleterious(0.02) probably_damaging(0.928) TCGA-CG-5733-01 12 57009170 57009170 G T BAZ2A Missense_Mutation p.P122T 0.04 deleterious(0.04) benign(0.425) TCGA-CG-5733-01 12 57600317 57600317 C G LRP1 Silent p.G3884G 0.32 TCGA-CG-5733-01 12 57858503 57858503 C T GLI1 Missense_Mutation p.R81W 0.32 deleterious(0) probably_damaging(0.997) TCGA-CG-5733-01 12 57864125 57864125 C - GLI1 Frame_Shift_Del p.P536Qfs*77 0.29 TCGA-CG-5733-01 12 57957459 57957459 A - KIF5A Frame_Shift_Del p.T93Hfs*13 0.23 TCGA-CG-5733-01 12 58160653 58160654 - C CYP27B1 Frame_Shift_Ins p.L58Afs*275 0.27 TCGA-CG-5733-01 12 58204896 58204896 C - AVIL Frame_Shift_Del p.G118Vfs*6 0.28 TCGA-CG-5733-01 12 6472695 6472695 C T SCNN1A Missense_Mutation p.A259T 0.27 tolerated(0.41) benign(0.283) TCGA-CG-5733-01 12 66788074 66788074 C - GRIP1 Frame_Shift_Del p.G632Afs*14 0.27 TCGA-CG-5733-01 12 67706721 67706721 T - CAND1 3'UTR 0.25 TCGA-CG-5733-01 12 69980100 69980101 AG - CCT2 Frame_Shift_Del p.R20Sfs*46 0.32 TCGA-CG-5733-01 12 70150275 70150276 AG - RAB3IP Frame_Shift_Del p.E133Vfs*15 0.28 TCGA-CG-5733-01 12 7087667 7087667 T G LPCAT3 Missense_Mutation p.E292D 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-CG-5733-01 12 72667121 72667121 C T TRHDE Missense_Mutation p.A188V 0.07 tolerated(0.11) benign(0.003) TCGA-CG-5733-01 12 7277310 7277310 T C RBP5 Missense_Mutation p.E90G 0.29 deleterious(0.02) possibly_damaging(0.877) TCGA-CG-5733-01 12 7310180 7310180 C T CLSTN3 Missense_Mutation p.R875C 0.48 deleterious(0) possibly_damaging(0.677) TCGA-CG-5733-01 12 81226314 81226314 T C LIN7A Intron 0.12 TCGA-CG-5733-01 12 8242847 8242847 G A NECAP1 Missense_Mutation p.V85M 0.30 deleterious(0) probably_damaging(1) TCGA-CG-5733-01 12 82746900 82746900 C T CCDC59 3'UTR 0.24 TCGA-CG-5733-01 12 94244125 94244126 - T CRADD 3'UTR 0.31 TCGA-CG-5733-01 12 95927734 95927734 C T USP44 Missense_Mutation p.R100H 0.32 deleterious(0.01) benign(0.009) TCGA-CG-5733-01 12 96292432 96292432 T - CCDC38 Frame_Shift_Del p.A150Qfs*24 0.31 TCGA-CG-5733-01 12 97306377 97306377 A C NEDD1 Intron 0.20 TCGA-CG-5733-01 13 100925452 100925452 T - PCCA Frame_Shift_Del p.L308Wfs*14 0.29 TCGA-CG-5733-01 13 101077918 101077918 C T PCCA Missense_Mutation p.T593I 0.36 tolerated(0.26) benign(0.004) TCGA-CG-5733-01 13 101321023 101321023 G A TMTC4 Missense_Mutation p.A10V 0.26 tolerated_low_confidence(0.23) benign(0.023) TCGA-CG-5733-01 13 101717877 101717877 G A NALCN Missense_Mutation p.R1495W 0.33 deleterious(0) probably_damaging(0.999) TCGA-CG-5733-01 13 102047698 102047698 G A NALCN Missense_Mutation p.R43C 0.25 deleterious(0) probably_damaging(0.985) TCGA-CG-5733-01 13 102359214 102359215 TG - ITGBL1 Frame_Shift_Del p.C415* 0.28 TCGA-CG-5733-01 13 112722290 112722290 G A SOX1 Silent p.R106R 0.30 TCGA-CG-5733-01 13 113744018 113744018 A G MCF2L Missense_Mutation p.T977A 0.22 tolerated(0.32) benign(0) TCGA-CG-5733-01 13 20638677 20638677 A - ZMYM2 Frame_Shift_Del p.K1044Rfs*33 0.43 TCGA-CG-5733-01 13 25399806 25399806 A G RNF17 Missense_Mutation p.Y714C 0.29 deleterious(0) probably_damaging(0.996) TCGA-CG-5733-01 13 25744142 25744142 C G AMER2 Missense_Mutation p.S539T 0.32 tolerated(0.32) benign(0.401) TCGA-CG-5733-01 13 29284952 29284952 C T SLC46A3 Silent p.V363V 0.25 TCGA-CG-5733-01 13 29600876 29600876 G A MTUS2 Missense_Mutation p.E691K 0.23 deleterious(0.04) possibly_damaging(0.902) TCGA-CG-5733-01 13 30002933 30002933 C T MTUS2 Intron 0.24 TCGA-CG-5733-01 13 30072657 30072657 C T MTUS2 Missense_Mutation p.L1271F 0.41 deleterious(0.02) possibly_damaging(0.603) TCGA-CG-5733-01 13 32906658 32906658 T C BRCA2 Missense_Mutation p.V348A 0.31 tolerated(0.52) benign(0.029) TCGA-CG-5733-01 13 33591317 33591317 G A KL Missense_Mutation p.G247S 0.39 deleterious(0) probably_damaging(0.997) TCGA-CG-5733-01 13 33638206 33638206 T - KL Frame_Shift_Del p.H977Tfs*10 0.28 TCGA-CG-5733-01 13 36026370 36026370 C T NBEA Missense_Mutation p.A2149V 0.19 tolerated(0.22) benign(0.011) TCGA-CG-5733-01 13 36401891 36401891 C T DCLK1 Missense_Mutation p.E430K 0.21 deleterious(0.01) possibly_damaging(0.486) TCGA-CG-5733-01 13 36764121 36764122 - T SOHLH2 Frame_Shift_Ins p.I279Dfs*21 0.22 TCGA-CG-5733-01 13 76432063 76432063 G A LMO7 Missense_Mutation p.G1358S 0.28 tolerated_low_confidence(0.93) benign(0.032) TCGA-CG-5733-01 13 84454725 84454725 G A SLITRK1 Silent p.N306N 0.29 TCGA-CG-5733-01 13 98829144 98829144 T C RNF113B Missense_Mutation p.Q116R 0.27 deleterious(0.04) benign(0) TCGA-CG-5733-01 13 99092237 99092237 G - FARP1 Frame_Shift_Del p.V821Cfs*5 0.31 TCGA-CG-5733-01 14 20846338 20846338 C - TEP1 Frame_Shift_Del p.V1856Lfs*45 0.34 TCGA-CG-5733-01 14 20871978 20871978 C T TEP1 Silent p.T366T 0.33 TCGA-CG-5733-01 14 23776970 23776970 C T BCL2L2-PABPN1 Intron 0.26 TCGA-CG-5733-01 14 23884861 23884861 G A MYH7 Missense_Mutation p.R1712W 0.26 deleterious(0) possibly_damaging(0.558) TCGA-CG-5733-01 14 24842494 24842494 G A NFATC4 Missense_Mutation p.A556T 0.28 tolerated(0.36) possibly_damaging(0.621) TCGA-CG-5733-01 14 31355427 31355427 G T COCH Missense_Mutation p.R462S 0.07 deleterious(0.03) possibly_damaging(0.457) TCGA-CG-5733-01 14 34266683 34266683 C T NPAS3 Missense_Mutation p.T441I 0.25 tolerated(0.28) probably_damaging(0.969) TCGA-CG-5733-01 14 42373470 42373470 A G LRFN5 3'UTR 0.30 TCGA-CG-5733-01 14 50249176 50249176 G T KLHDC2 Splice_Site p.X348_splice 0.27 TCGA-CG-5733-01 14 51561482 51561482 T G TRIM9 Missense_Mutation p.D59A 0.28 tolerated(0.1) benign(0.009) TCGA-CG-5733-01 14 52948967 52948967 A G TXNDC16 Silent p.D431D 0.25 TCGA-CG-5733-01 14 55531369 55531369 C T MAPK1IP1L 3'UTR 0.25 TCGA-CG-5733-01 14 56137475 56137475 A - KTN1 Frame_Shift_Del p.K1101Rfs*18 0.20 TCGA-CG-5733-01 14 57747008 57747008 A G AP5M1 Silent p.V272V 0.29 TCGA-CG-5733-01 14 63671636 63671636 G A RHOJ Missense_Mutation p.D17N 0.19 tolerated_low_confidence(0.49) benign(0) TCGA-CG-5733-01 14 63851161 63851161 C T PPP2R5E Splice_Site p.X401_splice 0.27 TCGA-CG-5733-01 14 64867549 64867549 T C MTHFD1 Missense_Mutation p.L27S 0.29 deleterious(0.02) benign(0.223) TCGA-CG-5733-01 14 65198835 65198835 G A PLEKHG3 Missense_Mutation p.R327Q 0.18 deleterious(0) possibly_damaging(0.847) TCGA-CG-5733-01 14 65260557 65260557 G A SPTB Silent p.I608I 0.25 TCGA-CG-5733-01 14 68246963 68246963 C T ZFYVE26 Missense_Mutation p.A1557T 0.28 tolerated(0.19) possibly_damaging(0.772) TCGA-CG-5733-01 14 69695627 69695627 G A EXD2 Missense_Mutation p.C143Y 0.06 tolerated(1) benign(0.001) TCGA-CG-5733-01 14 73985743 73985743 C A HEATR4 Missense_Mutation p.Q398H 0.23 deleterious(0.01) possibly_damaging(0.906) TCGA-CG-5733-01 14 74824432 74824432 G A VRTN Missense_Mutation p.A316T 0.25 deleterious(0) probably_damaging(0.999) TCGA-CG-5733-01 14 74969544 74969544 G A LTBP2 Missense_Mutation p.P1661L 0.23 tolerated(0.88) benign(0.014) TCGA-CG-5733-01 14 75284986 75284986 G A YLPM1 Missense_Mutation p.R2000H 0.34 probably_damaging(0.992) TCGA-CG-5733-01 14 75388057 75388057 C T RPS6KL1 Missense_Mutation p.R63H 0.30 deleterious(0.02) probably_damaging(1) TCGA-CG-5733-01 14 77492010 77492010 T C IRF2BPL Missense_Mutation p.N709S 0.23 tolerated(0.76) unknown(0) TCGA-CG-5733-01 14 78197430 78197430 T - SNW1 Frame_Shift_Del p.M312Wfs*152 0.24 TCGA-CG-5733-01 14 88448557 88448557 A G GALC Missense_Mutation p.Y205H 0.24 deleterious(0) probably_damaging(0.999) TCGA-CG-5733-01 14 88654340 88654340 G A KCNK10 Missense_Mutation p.R328W 0.28 deleterious(0) probably_damaging(0.992) TCGA-CG-5733-01 14 89069238 89069238 C - ZC3H14 Frame_Shift_Del p.P529Qfs*16 0.27 TCGA-CG-5733-01 14 91282553 91282553 G A TTC7B Silent p.L29L 0.19 TCGA-CG-5733-01 14 91875074 91875074 C T CCDC88C Missense_Mutation p.V67I 0.20 tolerated(0.08) probably_damaging(0.999) TCGA-CG-5733-01 14 92472698 92472698 T - TRIP11 Frame_Shift_Del p.K541Rfs*17 0.24 TCGA-CG-5733-01 14 93652902 93652903 - A TMEM251 Frame_Shift_Ins p.T134Nfs*26 0.26 TCGA-CG-5733-01 14 95033560 95033560 G A SERPINA4 Nonsense_Mutation p.W301* 0.19 TCGA-CG-5733-01 14 95557666 95557666 C T DICER1 Missense_Mutation p.D1801N 0.29 deleterious(0.01) probably_damaging(0.959) TCGA-CG-5733-01 15 23889184 23889184 C T MAGEL2 Missense_Mutation p.G633S 0.33 tolerated_low_confidence(0.46) benign(0.007) TCGA-CG-5733-01 15 25227226 25227226 G A SNRPN 3'Flank 0.25 TCGA-CG-5733-01 15 25334966 25334966 A G SNORD116-23 5'Flank 0.31 TCGA-CG-5733-01 15 25449309 25449309 C - SNORD115-20 5'Flank 0.33 TCGA-CG-5733-01 15 31862339 31862339 T G OTUD7A Silent p.T71T 0.31 TCGA-CG-5733-01 15 33938602 33938602 G A RYR3 Silent p.T1272T 0.27 TCGA-CG-5733-01 15 34032146 34032146 C A RYR3 Silent p.I2590I 0.27 TCGA-CG-5733-01 15 34102805 34102805 A G RYR3 Silent p.P3384P 0.21 TCGA-CG-5733-01 15 35044711 35044711 T C GJD2 Missense_Mutation p.R312G 0.08 deleterious_low_confidence(0.05) possibly_damaging(0.529) TCGA-CG-5733-01 15 40661129 40661129 C A DISP2 Missense_Mutation p.P939H 0.10 deleterious(0) probably_damaging(1) TCGA-CG-5733-01 15 40764637 40764637 C T CHST14 3'UTR 0.27 TCGA-CG-5733-01 15 41384315 41384317 TTC - INO80 In_Frame_Del p.E149del 0.32 TCGA-CG-5733-01 15 42185101 42185101 G A SPTBN5 Silent p.L125L 0.08 TCGA-CG-5733-01 15 42646646 42646646 A - GANC 3'Flank 0.32 TCGA-CG-5733-01 15 42742957 42742957 A - ZNF106 Frame_Shift_Del p.S482Pfs*33 0.27 TCGA-CG-5733-01 15 49917367 49917367 G A DTWD1 Translation_Start_Site p.M1? 0.28 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-CG-5733-01 15 50931674 50931674 C T TRPM7 Missense_Mutation p.G203R 0.28 deleterious(0) probably_damaging(1) TCGA-CG-5733-01 15 52611494 52611494 A G MYO5A Missense_Mutation p.V1641A 0.22 tolerated(0.12) benign(0.094) TCGA-CG-5733-01 15 63893593 63893593 C A FBXL22 Missense_Mutation p.P151H 0.31 tolerated_low_confidence(0.13) benign(0) TCGA-CG-5733-01 15 69737166 69737166 G A KIF23 Missense_Mutation p.R806H 0.24 tolerated(0.38) benign(0.009) TCGA-CG-5733-01 15 71952908 71952908 G A THSD4 Missense_Mutation p.V398M 0.31 tolerated(0.28) benign(0.02) TCGA-CG-5733-01 15 74276451 74276451 C T STOML1 Missense_Mutation p.G342R 0.23 deleterious(0) probably_damaging(0.958) TCGA-CG-5733-01 15 74630343 74630343 C A CYP11A1 Missense_Mutation p.W512C 0.32 deleterious(0) benign(0.17) TCGA-CG-5733-01 15 75699401 75699402 - A SIN3A Frame_Shift_Ins p.D468* 0.19 TCGA-CG-5733-01 15 75819488 75819488 G A PTPN9 Missense_Mutation p.R60C 0.29 deleterious(0) benign(0.312) TCGA-CG-5733-01 15 79382869 79382869 C T RASGRF1 5'UTR 0.39 TCGA-CG-5733-01 15 79382913 79382913 G A RASGRF1 5'UTR 0.47 TCGA-CG-5733-01 15 83348969 83348969 G A AP3B2 Silent p.Y356Y 0.32 TCGA-CG-5733-01 15 83395899 83395899 C T AC105339.2 5'Flank 0.46 TCGA-CG-5733-01 15 85164613 85164613 G T ZSCAN2 Missense_Mutation p.G396V 0.04 deleterious(0) probably_damaging(0.941) TCGA-CG-5733-01 15 90188351 90188351 G - KIF7 Frame_Shift_Del p.P695Lfs*25 0.23 TCGA-CG-5733-01 15 93015568 93015569 - T C15orf32 Frame_Shift_Ins p.G65Wfs*47 0.25 TCGA-CG-5733-01 15 99486214 99486214 C T IGF1R Silent p.L1174L 0.36 TCGA-CG-5733-01 16 11785525 11785525 T C TXNDC11 Silent p.A507A 0.29 TCGA-CG-5733-01 16 11931769 11931770 - T RSL1D1 Frame_Shift_Ins p.D450Rfs*18 0.26 TCGA-CG-5733-01 16 11933782 11933784 TCT - RSL1D1 In_Frame_Del p.K305del 0.22 TCGA-CG-5733-01 16 11979123 11979123 G A GSPT1 Missense_Mutation p.P421L 0.29 deleterious(0.01) benign(0.3) TCGA-CG-5733-01 16 15788039 15788039 G - NDE1 Frame_Shift_Del p.T243Pfs*115 0.24 TCGA-CG-5733-01 16 1709993 1709993 G A CRAMP1L Missense_Mutation p.R781H 0.20 tolerated(0.11) possibly_damaging(0.897) TCGA-CG-5733-01 16 19063046 19063046 G A TMC7 Silent p.P593P 0.31 TCGA-CG-5733-01 16 20471449 20471449 C T ACSM2A Nonsense_Mutation p.R5* 0.38 TCGA-CG-5733-01 16 20994175 20994175 C T DNAH3 Missense_Mutation p.R2576H 0.29 deleterious(0.01) possibly_damaging(0.449) TCGA-CG-5733-01 16 2215906 2215906 C T TRAF7 Silent p.P36P 0.29 TCGA-CG-5733-01 16 23359943 23359943 T C SCNN1B Missense_Mutation p.L8P 0.42 deleterious_low_confidence(0.01) possibly_damaging(0.498) TCGA-CG-5733-01 16 24802952 24802952 C T TNRC6A Missense_Mutation p.R997C 0.23 deleterious(0) probably_damaging(0.999) TCGA-CG-5733-01 16 25255513 25255513 T C ZKSCAN2 Missense_Mutation p.H525R 0.26 deleterious(0) probably_damaging(0.999) TCGA-CG-5733-01 16 26147212 26147212 G A HS3ST4 Silent p.L338L 0.24 TCGA-CG-5733-01 16 27231806 27231806 G T KDM8 Missense_Mutation p.Q400H 0.30 deleterious(0) probably_damaging(0.973) TCGA-CG-5733-01 16 2822060 2822060 C T TCEB2 Silent p.P96P 0.07 TCGA-CG-5733-01 16 28354076 28354076 C T NPIPB6 Missense_Mutation p.R377Q 0.21 tolerated_low_confidence(0.1) probably_damaging(0.974) TCGA-CG-5733-01 16 28883900 28883900 C T SH2B1 Missense_Mutation p.H591Y 0.29 deleterious(0) probably_damaging(0.976) TCGA-CG-5733-01 16 30440564 30440564 C T DCTPP1 Intron 0.48 TCGA-CG-5733-01 16 30616043 30616043 G A ZNF689 Missense_Mutation p.H349Y 0.36 deleterious(0.01) benign(0.245) TCGA-CG-5733-01 16 30734020 30734020 C A SRCAP Missense_Mutation p.S1281R 0.28 unknown(0) TCGA-CG-5733-01 16 31088784 31088784 G A ZNF646 Missense_Mutation p.G380D 0.38 deleterious(0) probably_damaging(1) TCGA-CG-5733-01 16 31372506 31372506 A T ITGAX Missense_Mutation p.Q328H 0.26 deleterious(0.03) possibly_damaging(0.551) TCGA-CG-5733-01 16 31498660 31498660 G A SLC5A2 Missense_Mutation p.M198I 0.05 tolerated(1) probably_damaging(0.997) TCGA-CG-5733-01 16 31512030 31512030 G A C16orf58 Silent p.R146R 0.19 TCGA-CG-5733-01 16 34712235 34712235 C T RP11-80F22.9 RNA 0.16 TCGA-CG-5733-01 16 3789629 3789629 A - CREBBP Frame_Shift_Del p.F1410Lfs*49 0.32 TCGA-CG-5733-01 16 47165885 47165886 - T NETO2 Frame_Shift_Ins p.T29Nfs*36 0.27 TCGA-CG-5733-01 16 47165899 47165899 G A NETO2 Silent p.A24A 0.27 TCGA-CG-5733-01 16 48226616 48226616 G A ABCC11 Nonsense_Mutation p.R841* 0.34 TCGA-CG-5733-01 16 4862174 4862174 A G GLYR1 Silent p.L399L 0.14 TCGA-CG-5733-01 16 51170979 51170979 C T SALL1 3'UTR 0.28 TCGA-CG-5733-01 16 51175241 51175241 C T SALL1 Missense_Mutation p.G298R 0.06 tolerated(0.18) probably_damaging(1) TCGA-CG-5733-01 16 55600706 55600706 G A CAPNS2 Missense_Mutation p.R13Q 0.27 tolerated_low_confidence(0.27) benign(0.001) TCGA-CG-5733-01 16 56401438 56401438 C T AMFR Missense_Mutation p.R506Q 0.30 tolerated(0.46) benign(0.018) TCGA-CG-5733-01 16 56862946 56862946 C T NUP93 Silent p.G284G 0.24 TCGA-CG-5733-01 16 57595970 57595970 C T GPR114 Intron 0.21 TCGA-CG-5733-01 16 61747844 61747844 C T CDH8 Missense_Mutation p.A519T 0.04 deleterious(0) probably_damaging(0.965) TCGA-CG-5733-01 16 66974142 66974142 C T CES2 Silent p.H211H 0.08 TCGA-CG-5733-01 16 67199519 67199519 G A HSF4 Missense_Mutation p.R73H 0.40 deleterious(0) probably_damaging(1) TCGA-CG-5733-01 16 67293791 67293791 G A SLC9A5 Missense_Mutation p.R595H 0.38 tolerated(0.11) possibly_damaging(0.742) TCGA-CG-5733-01 16 67314221 67314221 G C PLEKHG4 Missense_Mutation p.V92L 0.28 tolerated(0.53) benign(0.003) TCGA-CG-5733-01 16 67472975 67472975 T C ATP6V0D1 Missense_Mutation p.K239E 0.26 tolerated(0.1) benign(0.158) TCGA-CG-5733-01 16 67917843 67917844 - C EDC4 Intron 0.28 TCGA-CG-5733-01 16 67968747 67968747 G A PSMB10 Silent p.G221G 0.37 TCGA-CG-5733-01 16 68862117 68862117 G A CDH1 Silent p.A735A 0.26 TCGA-CG-5733-01 16 69687167 69687167 G A NFAT5 Missense_Mutation p.V281I 0.28 benign(0.002) TCGA-CG-5733-01 16 70778435 70778435 G - VAC14 Frame_Shift_Del p.A474Qfs*33 0.22 TCGA-CG-5733-01 16 70954971 70954971 C A HYDIN Missense_Mutation p.Q2436H 0.27 probably_damaging(0.977) TCGA-CG-5733-01 16 71052314 71052314 T - HYDIN Frame_Shift_Del p.N1121Tfs*3 0.13 TCGA-CG-5733-01 16 71803538 71803538 C T AP1G1 Silent p.A210A 0.25 TCGA-CG-5733-01 16 72831632 72831632 G T ZFHX3 Missense_Mutation p.S1650Y 0.27 possibly_damaging(0.809) TCGA-CG-5733-01 16 72991509 72991509 G A ZFHX3 Missense_Mutation p.R846C 0.28 probably_damaging(0.993) TCGA-CG-5733-01 16 72992629 72992629 C T ZFHX3 Silent p.A472A 0.30 TCGA-CG-5733-01 16 77359782 77359782 T G ADAMTS18 Missense_Mutation p.K671N 0.25 deleterious(0) possibly_damaging(0.675) TCGA-CG-5733-01 16 81076065 81076065 C T ATMIN Silent p.H214H 0.29 TCGA-CG-5733-01 16 81390563 81390563 G T GAN Silent p.R269R 0.04 TCGA-CG-5733-01 16 83378575 83378575 C T CDH13 Missense_Mutation p.P296S 0.28 deleterious(0.04) probably_damaging(0.924) TCGA-CG-5733-01 16 84005769 84005769 C T NECAB2 Missense_Mutation p.A72V 0.34 deleterious(0) possibly_damaging(0.683) TCGA-CG-5733-01 16 86612470 86612470 G A FOXL1 Silent p.P47P 0.35 TCGA-CG-5733-01 16 88725067 88725067 G A MVD Silent p.H44H 0.24 TCGA-CG-5733-01 16 88748006 88748006 C T SNAI3 Missense_Mutation p.V65I 0.45 tolerated(1) benign(0) TCGA-CG-5733-01 16 89986279 89986279 G A MC1R Missense_Mutation p.V205M 0.40 tolerated(0.1) possibly_damaging(0.841) TCGA-CG-5733-01 16 90124446 90124447 TG - PRDM7 3'UTR 0.34 TCGA-CG-5733-01 17 10222241 10222241 C A MYH13 Missense_Mutation p.D1202Y 0.27 deleterious(0) probably_damaging(0.999) TCGA-CG-5733-01 17 10362680 10362680 A - MYH4 Frame_Shift_Del p.F492Sfs*46 0.30 TCGA-CG-5733-01 17 10428368 10428368 A G MYH2 Silent p.H1559H 0.25 TCGA-CG-5733-01 17 10428789 10428789 G A MYH2 Nonsense_Mutation p.R1506* 0.31 TCGA-CG-5733-01 17 11572475 11572475 G - DNAH9 Frame_Shift_Del p.G944Vfs*56 0.26 TCGA-CG-5733-01 17 1378128 1378128 A G MYO1C Missense_Mutation p.L565P 0.29 deleterious(0.01) probably_damaging(0.984) TCGA-CG-5733-01 17 15975514 15975514 C - NCOR1 Frame_Shift_Del p.S1281Vfs*16 0.25 TCGA-CG-5733-01 17 16320901 16320901 G A TRPV2 5'UTR 0.31 TCGA-CG-5733-01 17 17117098 17117098 G A FLCN Silent p.S537S 0.24 TCGA-CG-5733-01 17 18133328 18133328 G A LLGL1 Missense_Mutation p.G52D 0.29 deleterious(0) probably_damaging(0.979) TCGA-CG-5733-01 17 18138263 18138263 G A LLGL1 Missense_Mutation p.R339H 0.30 deleterious(0) probably_damaging(0.993) TCGA-CG-5733-01 17 18881935 18881935 C T FAM83G Silent p.K348K 0.34 TCGA-CG-5733-01 17 19452949 19452949 C T SLC47A1 Missense_Mutation p.L153F 0.18 deleterious(0) possibly_damaging(0.812) TCGA-CG-5733-01 17 2236284 2236284 G A TSR1 Missense_Mutation p.H426Y 0.05 tolerated(0.44) benign(0.001) TCGA-CG-5733-01 17 27001457 27001457 G A SUPT6H Missense_Mutation p.R89H 0.24 tolerated(0.25) unknown(0) TCGA-CG-5733-01 17 27064381 27064381 C T NEK8 Missense_Mutation p.R226W 0.18 deleterious(0) possibly_damaging(0.846) TCGA-CG-5733-01 17 27207775 27207775 G A FLOT2 Silent p.L402L 0.29 TCGA-CG-5733-01 17 27977813 27977813 C T SSH2 Missense_Mutation p.R335Q 0.25 tolerated(0.06) possibly_damaging(0.79) TCGA-CG-5733-01 17 28296060 28296061 - A EFCAB5 Frame_Shift_Ins p.L151Tfs*3 0.33 TCGA-CG-5733-01 17 28296322 28296322 A G EFCAB5 Missense_Mutation p.Q235R 0.31 tolerated(0.25) probably_damaging(0.988) TCGA-CG-5733-01 17 31416001 31416001 C T ASIC2 Silent p.T289T 0.26 TCGA-CG-5733-01 17 31439005 31439005 C - ASIC2 Frame_Shift_Del p.T264Qfs*32 0.28 TCGA-CG-5733-01 17 33586247 33586247 C T SLFN5 Missense_Mutation p.R180W 0.28 deleterious(0.01) possibly_damaging(0.613) TCGA-CG-5733-01 17 34251608 34251608 C A RDM1 Nonsense_Mutation p.G190* 0.28 TCGA-CG-5733-01 17 36499438 36499438 G A GPR179 Missense_Mutation p.R79C 0.09 deleterious(0) possibly_damaging(0.677) TCGA-CG-5733-01 17 36880978 36880978 C T MLLT6 Silent p.L997L 0.27 TCGA-CG-5733-01 17 37657601 37657601 A G CDK12 Missense_Mutation p.M840V 0.26 probably_damaging(0.976) TCGA-CG-5733-01 17 38153813 38153813 T A PSMD3 Missense_Mutation p.D528E 0.07 tolerated(0.41) benign(0.028) TCGA-CG-5733-01 17 38933343 38933343 G T KRT27 Missense_Mutation p.P430T 0.24 tolerated(0.32) benign(0.001) TCGA-CG-5733-01 17 39674981 39674981 C - KRT15 Frame_Shift_Del p.S34Vfs*31 0.38 TCGA-CG-5733-01 17 39888507 39888507 G A HAP1 Missense_Mutation p.A230V 0.30 deleterious(0.02) possibly_damaging(0.682) TCGA-CG-5733-01 17 39975559 39975559 C - FKBP10 Frame_Shift_Del p.G278Afs*20 0.45 TCGA-CG-5733-01 17 39994259 39994259 C A KLHL10 Silent p.A25A 0.11 TCGA-CG-5733-01 17 40705607 40705607 T C HSD17B1 Missense_Mutation p.L139S 0.21 deleterious(0) probably_damaging(1) TCGA-CG-5733-01 17 40856673 40856673 C T EZH1 Missense_Mutation p.R655H 0.33 deleterious(0) probably_damaging(0.998) TCGA-CG-5733-01 17 41001154 41001154 C - AOC2 Frame_Shift_Del p.W549Gfs*12 0.20 TCGA-CG-5733-01 17 42293150 42293150 G T UBTF Missense_Mutation p.L116M 0.30 tolerated(0.06) probably_damaging(0.999) TCGA-CG-5733-01 17 42476878 42476878 G T GPATCH8 Missense_Mutation p.S856Y 0.23 deleterious_low_confidence(0.03) unknown(0) TCGA-CG-5733-01 17 42478310 42478310 T - GPATCH8 Frame_Shift_Del p.R379Gfs*2 0.10 TCGA-CG-5733-01 17 42837126 42837126 G - ADAM11 Frame_Shift_Del p.G35Afs*52 0.20 TCGA-CG-5733-01 17 43009431 43009431 G A KIF18B Missense_Mutation p.A461V 0.27 tolerated(0.32) benign(0.023) TCGA-CG-5733-01 17 4352608 4352608 G A SPNS3 Silent p.K283K 0.29 TCGA-CG-5733-01 17 44828940 44828940 A G NSF Missense_Mutation p.I705M 0.32 deleterious(0) probably_damaging(0.914) TCGA-CG-5733-01 17 44950021 44950021 C T WNT9B Silent p.P72P 0.15 TCGA-CG-5733-01 17 45787930 45787930 G A TBKBP1 Missense_Mutation p.G596R 0.27 deleterious(0) unknown(0) TCGA-CG-5733-01 17 46154355 46154355 T - CBX1 Frame_Shift_Del p.K4Nfs*11 0.25 TCGA-CG-5733-01 17 4635160 4635160 G A MED11 Missense_Mutation p.V59M 0.32 deleterious(0) probably_damaging(0.989) TCGA-CG-5733-01 17 47778696 47778696 T - SLC35B1 3'UTR 0.14 TCGA-CG-5733-01 17 48434049 48434049 A G XYLT2 Missense_Mutation p.M554V 0.33 tolerated(0.49) benign(0.004) TCGA-CG-5733-01 17 48753735 48753735 C T ABCC3 Missense_Mutation p.S1055L 0.33 tolerated(0.08) benign(0.072) TCGA-CG-5733-01 17 56424577 56424577 C T SUPT4H1 Silent p.A86A 0.22 TCGA-CG-5733-01 17 56435161 56435161 C - RNF43 Frame_Shift_Del p.G659Vfs*41 0.31 TCGA-CG-5733-01 17 56436149 56436149 G A RNF43 Nonsense_Mutation p.R330* 0.22 TCGA-CG-5733-01 17 56437515 56437515 A G RNF43 Missense_Mutation p.I316T 0.28 deleterious(0) probably_damaging(0.999) TCGA-CG-5733-01 17 57058168 57058168 A G PPM1E Missense_Mutation p.R682G 0.24 tolerated_low_confidence(0.1) benign(0.018) TCGA-CG-5733-01 17 57684403 57684403 C T DHX40 Missense_Mutation p.S737L 0.27 tolerated(0.1) benign(0.021) TCGA-CG-5733-01 17 57743872 57743872 T C CLTC Missense_Mutation p.F605S 0.24 deleterious(0) probably_damaging(1) TCGA-CG-5733-01 17 58285492 58285492 T - USP32 Frame_Shift_Del p.K951Nfs*3 0.19 TCGA-CG-5733-01 17 60741989 60741989 G A MRC2 Missense_Mutation p.A67T 0.27 tolerated(0.48) benign(0.044) TCGA-CG-5733-01 17 61781922 61781922 G A STRADA Silent p.N293N 0.27 TCGA-CG-5733-01 17 61958092 61958092 G A GH2 Silent p.L166L 0.31 TCGA-CG-5733-01 17 62525505 62525505 G A CEP95 Missense_Mutation p.R469H 0.09 tolerated(0.6) benign(0.003) TCGA-CG-5733-01 17 66924066 66924066 T - ABCA8 Frame_Shift_Del p.I422Ffs*16 0.09 TCGA-CG-5733-01 17 6927489 6927489 C T BCL6B Silent p.F89F 0.31 TCGA-CG-5733-01 17 72916266 72916266 C T USH1G Missense_Mutation p.R222Q 0.26 deleterious(0.04) benign(0.173) TCGA-CG-5733-01 17 73627686 73627686 C T RECQL5 Missense_Mutation p.C431Y 0.23 deleterious(0) probably_damaging(0.998) TCGA-CG-5733-01 17 74324878 74324878 G A PRPSAP1 Missense_Mutation p.T234M 0.26 deleterious(0.05) possibly_damaging(0.541) TCGA-CG-5733-01 17 74396261 74396262 - T UBE2O Frame_Shift_Ins p.N374Kfs*60 0.15 TCGA-CG-5733-01 17 7473800 7473800 C T SENP3 Missense_Mutation p.R490C 0.31 deleterious(0.02) benign(0.314) TCGA-CG-5733-01 17 76798447 76798447 C T USP36 Missense_Mutation p.C994Y 0.45 tolerated(0.06) benign(0) TCGA-CG-5733-01 17 7750430 7750430 G A KDM6B Missense_Mutation p.R306Q 0.30 unknown(0) TCGA-CG-5733-01 17 7752175 7752175 G A KDM6B Missense_Mutation p.A857T 0.26 possibly_damaging(0.695) TCGA-CG-5733-01 17 78090814 78090814 G - GAA Frame_Shift_Del p.E748Rfs*16 0.22 TCGA-CG-5733-01 17 78319326 78319326 C A RNF213 Silent p.T2397T 0.20 TCGA-CG-5733-01 17 79202797 79202797 C T ENTHD2 Silent p.S503S 0.39 TCGA-CG-5733-01 17 79220848 79220848 C T SLC38A10 Silent p.A693A 0.31 TCGA-CG-5733-01 17 79573742 79573742 G A NPLOC4 Missense_Mutation p.P210L 0.13 deleterious(0) probably_damaging(1) TCGA-CG-5733-01 17 79894022 79894022 G A PYCR1 Silent p.L39L 0.28 TCGA-CG-5733-01 17 79968693 79968693 C A ASPSCR1 Missense_Mutation p.L396M 0.31 tolerated(0.14) benign(0.382) TCGA-CG-5733-01 17 79973185 79973185 G A ASPSCR1 Missense_Mutation p.D530N 0.33 tolerated_low_confidence(0.33) benign(0.202) TCGA-CG-5733-01 17 80085655 80085655 C T CCDC57 Missense_Mutation p.A827T 0.24 tolerated(0.26) benign(0.017) TCGA-CG-5733-01 17 80274765 80274765 G T CD7 Missense_Mutation p.L59M 0.27 deleterious(0.05) probably_damaging(0.974) TCGA-CG-5733-01 17 8726318 8726318 G T PIK3R6 Missense_Mutation p.P571H 0.21 tolerated(0.41) probably_damaging(0.98) TCGA-CG-5733-01 18 12325560 12325560 G A TUBB6 Missense_Mutation p.V258M 0.12 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-CG-5733-01 18 12699829 12699829 T - CEP76 Frame_Shift_Del p.T99Lfs*90 0.35 TCGA-CG-5733-01 18 13049146 13049146 A - CEP192 Frame_Shift_Del p.T788Qfs*40 0.26 TCGA-CG-5733-01 18 18566911 18566911 T G ROCK1 Missense_Mutation p.E768D 0.22 tolerated(0.23) benign(0.076) TCGA-CG-5733-01 18 22805217 22805217 C T ZNF521 Missense_Mutation p.D889N 0.25 tolerated(0.35) possibly_damaging(0.893) TCGA-CG-5733-01 18 25570168 25570168 A - CDH2 Frame_Shift_Del p.F497Lfs*20 0.22 TCGA-CG-5733-01 18 29868123 29868123 A G GAREM Missense_Mutation p.I146T 0.25 tolerated(0.11) possibly_damaging(0.636) TCGA-CG-5733-01 18 30349862 30349862 G - KLHL14 Frame_Shift_Del p.V232Wfs*30 0.44 TCGA-CG-5733-01 18 31318770 31318771 - A ASXL3 Frame_Shift_Ins p.N469Kfs*3 0.28 TCGA-CG-5733-01 18 34298660 34298660 G T FHOD3 Missense_Mutation p.K958N 0.03 deleterious(0.02) possibly_damaging(0.583) TCGA-CG-5733-01 18 34833844 34833844 C T CELF4 Missense_Mutation p.G464D 0.26 deleterious(0) probably_damaging(1) TCGA-CG-5733-01 18 42531906 42531906 C T SETBP1 Silent p.S867S 0.25 TCGA-CG-5733-01 18 44634940 44634940 A - HDHD2 3'UTR 0.43 TCGA-CG-5733-01 18 46288052 46288052 A G CTIF Missense_Mutation p.M457V 0.31 tolerated(0.08) benign(0.005) TCGA-CG-5733-01 18 51052985 51052985 A G DCC Splice_Site p.X1371_splice 0.24 TCGA-CG-5733-01 18 54424020 54424020 T - WDR7 Frame_Shift_Del p.L734* 0.23 TCGA-CG-5733-01 18 54483305 54483305 T C WDR7 Silent p.P1078P 0.29 TCGA-CG-5733-01 18 54629676 54629676 C T WDR7 Silent p.S1360S 0.06 TCGA-CG-5733-01 18 74091691 74091691 C T ZNF516 Silent p.P793P 0.21 TCGA-CG-5733-01 18 74620360 74620360 C A ZNF236 Silent p.A792A 0.05 TCGA-CG-5733-01 18 74639295 74639295 G T ZNF236 Silent p.T1410T 0.30 TCGA-CG-5733-01 18 76753440 76753440 G A SALL3 Silent p.P483P 0.26 TCGA-CG-5733-01 18 77037089 77037089 A G ATP9B Missense_Mutation p.Y435C 0.05 deleterious(0) probably_damaging(1) TCGA-CG-5733-01 18 77679353 77679353 C T PQLC1 Missense_Mutation p.V147M 0.21 tolerated(0.1) benign(0.042) TCGA-CG-5733-01 18 77794583 77794583 T C RBFA Missense_Mutation p.C30R 0.30 tolerated(0.35) benign(0.001) TCGA-CG-5733-01 18 8636350 8636350 A - RAB12 Frame_Shift_Del p.K207Rfs*7 0.20 TCGA-CG-5733-01 19 10404943 10404943 G A ICAM5 Missense_Mutation p.A647T 0.29 deleterious(0) possibly_damaging(0.783) TCGA-CG-5733-01 19 11488473 11488473 A - EPOR 3'UTR 0.35 TCGA-CG-5733-01 19 11504929 11504929 A - RGL3 3'Flank 0.15 TCGA-CG-5733-01 19 11617215 11617215 G A ECSIT Silent p.C360C 0.28 TCGA-CG-5733-01 19 12257031 12257031 A G ZNF625 Missense_Mutation p.M67T 0.29 tolerated(0.09) benign(0.001) TCGA-CG-5733-01 19 12384334 12384334 T - ZNF44 Frame_Shift_Del p.I294Yfs*24 0.26 TCGA-CG-5733-01 19 12790343 12790343 C T DHPS Silent p.T202T 0.06 TCGA-CG-5733-01 19 12969475 12969475 G A MAST1 Missense_Mutation p.E430K 0.34 deleterious(0) possibly_damaging(0.854) TCGA-CG-5733-01 19 13059096 13059096 C - RAD23A Frame_Shift_Del p.P115Hfs*43 0.26 TCGA-CG-5733-01 19 1398901 1398901 T A GAMT Missense_Mutation p.E195V 0.22 tolerated_low_confidence(0.15) benign(0.002) TCGA-CG-5733-01 19 1433740 1433740 C A DAZAP1 Intron 0.30 TCGA-CG-5733-01 19 15512143 15512143 T C AKAP8L Missense_Mutation p.M212V 0.23 tolerated(0.58) benign(0.015) TCGA-CG-5733-01 19 15533942 15533942 G - WIZ Frame_Shift_Del p.P777Hfs*152 0.25 TCGA-CG-5733-01 19 1578342 1578342 G A MBD3 Silent p.V291V 0.29 TCGA-CG-5733-01 19 16942458 16942458 G T SIN3B Missense_Mutation p.Q127H 0.23 deleterious(0.04) benign(0.005) TCGA-CG-5733-01 19 16980513 16980513 G A SIN3B Silent p.E715E 0.31 TCGA-CG-5733-01 19 17283255 17283255 C T MYO9B Missense_Mutation p.H635Y 0.29 deleterious(0) probably_damaging(0.998) TCGA-CG-5733-01 19 17330563 17330563 G A USE1 Missense_Mutation p.V241I 0.29 deleterious(0) probably_damaging(0.972) TCGA-CG-5733-01 19 17648229 17648229 G A FAM129C Missense_Mutation p.V189M 0.32 tolerated(0.08) probably_damaging(0.946) TCGA-CG-5733-01 19 1827647 1827647 T - REXO1 Frame_Shift_Del p.T381Pfs*112 0.27 TCGA-CG-5733-01 19 18368642 18368642 C T KIAA1683 Missense_Mutation p.R1151H 0.48 tolerated(0.2) benign(0.008) TCGA-CG-5733-01 19 18557279 18557279 G A ELL Missense_Mutation p.A515V 0.33 tolerated(0.39) benign(0.081) TCGA-CG-5733-01 19 19032668 19032668 G A DDX49 Silent p.A114A 0.08 TCGA-CG-5733-01 19 19906351 19906351 T - ZNF506 Frame_Shift_Del p.G116Afs*5 0.24 TCGA-CG-5733-01 19 20828055 20828056 - A ZNF626 Intron 0.28 TCGA-CG-5733-01 19 2193687 2193687 G A DOT1L Splice_Site p.X165_splice 0.35 TCGA-CG-5733-01 19 2213960 2213960 C T DOT1L Missense_Mutation p.A591V 0.34 tolerated(0.11) benign(0.151) TCGA-CG-5733-01 19 2291504 2291504 G A LINGO3 Missense_Mutation p.A91V 0.33 tolerated(0.05) benign(0.086) TCGA-CG-5733-01 19 2515096 2515096 C T GNG7 Missense_Mutation p.R44Q 0.15 tolerated(0.35) benign(0.045) TCGA-CG-5733-01 19 30311678 30311678 G A CCNE1 Missense_Mutation p.A178T 0.24 tolerated(0.06) probably_damaging(0.966) TCGA-CG-5733-01 19 33623259 33623259 G A WDR88 Missense_Mutation p.A62T 0.24 tolerated(0.05) benign(0.421) TCGA-CG-5733-01 19 33666454 33666454 G A WDR88 Silent p.P465P 0.28 TCGA-CG-5733-01 19 34263265 34263265 G A CHST8 Missense_Mutation p.R191H 0.35 deleterious(0) possibly_damaging(0.557) TCGA-CG-5733-01 19 34263278 34263278 C T CHST8 Silent p.C195C 0.26 TCGA-CG-5733-01 19 34943022 34943022 G - UBA2 Frame_Shift_Del p.D338Mfs*31 0.22 TCGA-CG-5733-01 19 35085149 35085149 G A SCGB2B2 Silent p.S59S 0.09 TCGA-CG-5733-01 19 35175800 35175800 A G ZNF302 Silent p.E286E 0.25 TCGA-CG-5733-01 19 35231879 35231880 - A ZNF181 Frame_Shift_Ins p.N200Kfs*2 0.27 TCGA-CG-5733-01 19 35719007 35719007 G A FAM187B Missense_Mutation p.R193W 0.28 deleterious(0) probably_damaging(0.998) TCGA-CG-5733-01 19 36109010 36109010 C T HAUS5 Missense_Mutation p.A245V 0.36 deleterious(0.02) probably_damaging(0.992) TCGA-CG-5733-01 19 36278096 36278096 C - ARHGAP33 Frame_Shift_Del p.P717Lfs*79 0.41 TCGA-CG-5733-01 19 3644115 3644115 C - PIP5K1C Frame_Shift_Del p.A494Pfs*117 0.44 TCGA-CG-5733-01 19 36611634 36611634 G A TBCB Missense_Mutation p.R94H 0.31 deleterious(0.04) benign(0.003) TCGA-CG-5733-01 19 3733835 3733835 G A TJP3 Missense_Mutation p.V277M 0.33 deleterious(0) probably_damaging(0.995) TCGA-CG-5733-01 19 38573616 38573616 G A SIPA1L3 Missense_Mutation p.A471T 0.14 deleterious(0) possibly_damaging(0.905) TCGA-CG-5733-01 19 39294176 39294176 G T LGALS4 Missense_Mutation p.P186T 0.34 deleterious(0.02) benign(0.021) TCGA-CG-5733-01 19 39799075 39799075 G A LRFN1 Missense_Mutation p.P505L 0.36 deleterious(0) benign(0.109) TCGA-CG-5733-01 19 39870681 39870681 C T SAMD4B Missense_Mutation p.R536C 0.16 deleterious(0) probably_damaging(0.953) TCGA-CG-5733-01 19 40373995 40373995 G A FCGBP Missense_Mutation p.P4028L 0.17 probably_damaging(0.913) TCGA-CG-5733-01 19 40480513 40480513 G A PSMC4 Silent p.P184P 0.27 TCGA-CG-5733-01 19 40581188 40581188 T - ZNF780A Frame_Shift_Del p.K388Nfs*28 0.26 TCGA-CG-5733-01 19 40739397 40739397 G A AKT2 3'UTR 0.39 TCGA-CG-5733-01 19 40947828 40947828 T G SERTAD3 Silent p.R54R 0.15 TCGA-CG-5733-01 19 41062146 41062146 G A SPTBN4 Silent p.E1747E 0.19 TCGA-CG-5733-01 19 41132911 41132911 C - LTBP4 Frame_Shift_Del p.A1408Hfs*20 0.29 TCGA-CG-5733-01 19 41600201 41600201 A C CYP2A13 Missense_Mutation p.K342T 0.07 tolerated(0.7) possibly_damaging(0.784) TCGA-CG-5733-01 19 41631480 41631481 - T CYP2F1 Frame_Shift_Ins p.L414Ffs*89 0.12 TCGA-CG-5733-01 19 41822288 41822288 G T CCDC97 Splice_Site p.X16_splice 0.23 TCGA-CG-5733-01 19 41863901 41863901 C T B9D2 Missense_Mutation p.V39M 0.36 tolerated(0.25) benign(0.023) TCGA-CG-5733-01 19 4217166 4217166 C T ANKRD24 Missense_Mutation p.T670I 0.18 tolerated_low_confidence(0.06) benign(0.001) TCGA-CG-5733-01 19 42354596 42354596 C A DMRTC2 Silent p.A273A 0.23 TCGA-CG-5733-01 19 42492739 42492739 G A ATP1A3 Silent p.D7D 0.16 TCGA-CG-5733-01 19 42794892 42794892 G - CIC Frame_Shift_Del p.A659Pfs*69 0.24 TCGA-CG-5733-01 19 42796883 42796883 C - CIC Frame_Shift_Del p.P1116Qfs*45 0.41 TCGA-CG-5733-01 19 42798378 42798378 C T CIC Missense_Mutation p.R1417C 0.05 probably_damaging(0.973) TCGA-CG-5733-01 19 44112175 44112180 TCCTCT - ZNF428 In_Frame_Del p.E53_E54del 0.30 TCGA-CG-5733-01 19 44130991 44130991 C T CADM4 Silent p.P148P 0.27 TCGA-CG-5733-01 19 4445334 4445334 A G UBXN6 3'UTR 0.29 TCGA-CG-5733-01 19 4445590 4445590 C T UBXN6 Missense_Mutation p.D411N 0.24 tolerated(0.06) possibly_damaging(0.88) TCGA-CG-5733-01 19 4538452 4538453 - G LRG1 Frame_Shift_Ins p.G182Rfs*13 0.32 TCGA-CG-5733-01 19 45573322 45573322 C T CLASRP Silent p.R639R 0.23 TCGA-CG-5733-01 19 45797635 45797635 G A MARK4 Missense_Mutation p.R508H 0.27 deleterious(0.02) probably_damaging(0.964) TCGA-CG-5733-01 19 45998164 45998165 - G RTN2 Frame_Shift_Ins p.R60Pfs*11 0.18 TCGA-CG-5733-01 19 46190721 46190721 A - SNRPD2 3'UTR 0.39 TCGA-CG-5733-01 19 46387358 46387358 C T IRF2BP1 Missense_Mutation p.V559M 0.27 deleterious(0) probably_damaging(0.927) TCGA-CG-5733-01 19 46973314 46973314 C T PNMAL1 Missense_Mutation p.E327K 0.31 tolerated(0.26) possibly_damaging(0.502) TCGA-CG-5733-01 19 47912499 47912499 C T MEIS3 Missense_Mutation p.G239R 0.32 deleterious(0.02) possibly_damaging(0.807) TCGA-CG-5733-01 19 4816465 4816465 G - TICAM1 Frame_Shift_Del p.P642Hfs*50 0.29 TCGA-CG-5733-01 19 4817190 4817190 G T TICAM1 Silent p.L400L 0.32 TCGA-CG-5733-01 19 48845964 48845964 C T TMEM143 Silent p.L266L 0.26 TCGA-CG-5733-01 19 49132082 49132082 C T SPHK2 Silent p.F339F 0.31 TCGA-CG-5733-01 19 49253910 49253910 C T FUT1 Missense_Mutation p.R210H 0.35 tolerated(0.06) benign(0.015) TCGA-CG-5733-01 19 49651461 49651461 A G PPFIA3 Missense_Mutation p.H986R 0.24 deleterious(0) probably_damaging(0.999) TCGA-CG-5733-01 19 49843440 49843440 G - CD37 Intron 0.26 TCGA-CG-5733-01 19 50169016 50169016 T - IRF3 5'UTR 0.25 TCGA-CG-5733-01 19 50332236 50332236 G T MED25 Silent p.T138T 0.07 TCGA-CG-5733-01 19 50411536 50411536 C T NUP62 Missense_Mutation p.R510H 0.26 tolerated(0.08) benign(0.242) TCGA-CG-5733-01 19 50837601 50837602 - C KCNC3 5'Flank 0.23 TCGA-CG-5733-01 19 50918097 50918097 G A POLD1 Missense_Mutation p.S805N 0.16 tolerated(1) benign(0.013) TCGA-CG-5733-01 19 5110750 5110750 C T KDM4B Missense_Mutation p.R346W 0.41 possibly_damaging(0.821) TCGA-CG-5733-01 19 52034029 52034030 - G SIGLEC6 Frame_Shift_Ins p.R205Tfs*71 0.26 TCGA-CG-5733-01 19 52131208 52131208 G - SIGLEC5 Frame_Shift_Del p.I293Sfs*12 0.27 TCGA-CG-5733-01 19 53015138 53015138 C T ZNF578 Missense_Mutation p.R502C 0.25 tolerated(0.05) possibly_damaging(0.804) TCGA-CG-5733-01 19 53611976 53611976 T C ZNF415 Missense_Mutation p.K441R 0.30 deleterious(0.04) possibly_damaging(0.716) TCGA-CG-5733-01 19 53770718 53770718 T C VN1R4 Silent p.A67A 0.18 TCGA-CG-5733-01 19 53901257 53901257 A G ZNF765 5'UTR 0.23 TCGA-CG-5733-01 19 54967257 54967257 G A LENG8 Silent p.P379P 0.29 TCGA-CG-5733-01 19 55144563 55144563 T C LILRB1 Missense_Mutation p.M352T 0.27 tolerated(0.44) benign(0.001) TCGA-CG-5733-01 19 55602837 55602837 G T PPP1R12C 3'UTR 0.24 TCGA-CG-5733-01 19 55686555 55686555 C T SYT5 Silent p.A231A 0.33 TCGA-CG-5733-01 19 55994335 55994335 G A ZNF628 Missense_Mutation p.R592Q 0.36 deleterious(0.03) probably_damaging(0.947) TCGA-CG-5733-01 19 56203184 56203184 G - EPN1 Frame_Shift_Del p.G364Afs*164 0.38 TCGA-CG-5733-01 19 57839961 57839961 C T ZNF543 Silent p.C377C 0.17 TCGA-CG-5733-01 19 57999203 57999203 G A ZNF419 5'UTR 0.24 TCGA-CG-5733-01 19 58232616 58232616 T C ZNF671 Missense_Mutation p.M280V 0.35 tolerated(0.12) benign(0.003) TCGA-CG-5733-01 19 58319437 58319437 G A ZNF552 Nonsense_Mutation p.Q399* 0.03 TCGA-CG-5733-01 19 58565272 58565272 C T ZSCAN1 Silent p.S360S 0.31 TCGA-CG-5733-01 19 59074394 59074394 C A MZF1 Missense_Mutation p.C417F 0.41 deleterious(0) probably_damaging(0.996) TCGA-CG-5733-01 19 617821 617821 C T POLRMT Missense_Mutation p.D1151N 0.22 deleterious(0) probably_damaging(0.996) TCGA-CG-5733-01 19 6590986 6590986 C T CD70 Missense_Mutation p.V10M 0.30 tolerated(0.07) benign(0.099) TCGA-CG-5733-01 19 7585040 7585040 G A ZNF358 Silent p.S304S 0.32 TCGA-CG-5733-01 19 7928374 7928374 C T EVI5L Missense_Mutation p.A735V 0.33 tolerated_low_confidence(1) benign(0) TCGA-CG-5733-01 19 7975260 7975260 T C MAP2K7 Splice_Site p.X149_splice 0.26 TCGA-CG-5733-01 19 7975970 7975970 G A MAP2K7 Missense_Mutation p.D261N 0.28 deleterious(0) probably_damaging(1) TCGA-CG-5733-01 19 8194245 8194245 G A FBN3 Silent p.I683I 0.33 TCGA-CG-5733-01 19 9024942 9024942 T C MUC16 Missense_Mutation p.D12307G 0.10 possibly_damaging(0.565) TCGA-CG-5733-01 19 9046900 9046900 C T MUC16 Nonsense_Mutation p.W11577* 0.06 TCGA-CG-5733-01 19 9059157 9059157 T - MUC16 Frame_Shift_Del p.N9430Tfs*13 0.29 TCGA-CG-5733-01 19 9068944 9068944 C A MUC16 Missense_Mutation p.G6168C 0.21 unknown(0) TCGA-CG-5733-01 19 9076908 9076908 G A MUC16 Missense_Mutation p.A3513V 0.22 unknown(0) TCGA-CG-5733-01 19 9965341 9965341 G A OLFM2 Missense_Mutation p.R296C 0.30 deleterious(0.02) probably_damaging(0.973) TCGA-CG-5733-01 1 101705754 101705754 A - S1PR1 3'UTR 0.28 TCGA-CG-5733-01 1 10231281 10231281 A C UBE4B Missense_Mutation p.N1140T 0.28 tolerated(0.11) possibly_damaging(0.823) TCGA-CG-5733-01 1 109242695 109242695 T - PRPF38B 3'UTR 0.25 TCGA-CG-5733-01 1 109560141 109560141 T - WDR47 Frame_Shift_Del p.R81Gfs*7 0.25 TCGA-CG-5733-01 1 109792844 109792844 C T CELSR2 Missense_Mutation p.S48L 0.33 deleterious_low_confidence(0.02) benign(0.007) TCGA-CG-5733-01 1 109810552 109810552 C T CELSR2 Missense_Mutation p.T2063M 0.36 deleterious(0.04) possibly_damaging(0.867) TCGA-CG-5733-01 1 110086921 110086921 T C GPR61 Missense_Mutation p.L426P 0.26 deleterious(0.01) possibly_damaging(0.694) TCGA-CG-5733-01 1 110087112 110087112 C T GPR61 3'UTR 0.30 TCGA-CG-5733-01 1 110146144 110146144 C T GNAT2 Silent p.A299A 0.19 TCGA-CG-5733-01 1 110944145 110944145 T C LAMTOR5 Nonstop_Mutation p.*174Wext*11 0.28 TCGA-CG-5733-01 1 111061012 111061012 C T KCNA10 Missense_Mutation p.R133Q 0.04 deleterious(0) probably_damaging(0.999) TCGA-CG-5733-01 1 113244211 113244211 C T RHOC Missense_Mutation p.G178D 0.05 deleterious(0) benign(0.004) TCGA-CG-5733-01 1 114225581 114225581 C - MAGI3 Frame_Shift_Del p.P1132Hfs*16 0.24 TCGA-CG-5733-01 1 114438321 114438321 A G AP4B1 Intron 0.30 TCGA-CG-5733-01 1 115263163 115263163 A T CSDE1 Missense_Mutation p.D729E 0.27 tolerated(0.16) benign(0.374) TCGA-CG-5733-01 1 11596562 11596562 C T PTCHD2 Missense_Mutation p.T1333M 0.29 deleterious(0) probably_damaging(0.996) TCGA-CG-5733-01 1 116926744 116926744 A G ATP1A1 Missense_Mutation p.M41V 0.32 tolerated(0.1) benign(0.001) TCGA-CG-5733-01 1 117663856 117663856 G C TRIM45 5'UTR 0.05 TCGA-CG-5733-01 1 1225650 1225650 G T SCNN1D Splice_Site p.X555_splice 0.32 TCGA-CG-5733-01 1 1249315 1249315 G A CPSF3L Intron 0.33 TCGA-CG-5733-01 1 1262694 1262694 C T GLTPD1 Missense_Mutation p.R66C 0.28 deleterious(0.04) benign(0.017) TCGA-CG-5733-01 1 12979762 12979762 C T PRAMEF7 Silent p.I318I 0.25 TCGA-CG-5733-01 1 145527707 145527708 - G ITGA10 Frame_Shift_Ins p.G52Wfs*42 0.24 TCGA-CG-5733-01 1 146680415 146680415 T C FMO5 Missense_Mutation p.R277G 0.04 tolerated(0.24) benign(0.17) TCGA-CG-5733-01 1 149858742 149858744 ACA - HIST2H2AC In_Frame_Del p.N74del 0.48 TCGA-CG-5733-01 1 150531071 150531071 C A ADAMTSL4 Silent p.A835A 0.22 TCGA-CG-5733-01 1 150933382 150933382 C - SETDB1 Frame_Shift_Del p.P950Qfs*16 0.29 TCGA-CG-5733-01 1 150990325 150990325 C T PRUNE Missense_Mutation p.A26V 0.24 tolerated(0.05) probably_damaging(0.96) TCGA-CG-5733-01 1 152082655 152082655 C T TCHH Missense_Mutation p.R1013H 0.26 unknown(0) TCGA-CG-5733-01 1 152283237 152283237 G A FLG Silent p.H1375H 0.29 TCGA-CG-5733-01 1 152286331 152286331 G A FLG Missense_Mutation p.A344V 0.28 probably_damaging(0.954) TCGA-CG-5733-01 1 152484105 152484105 G A LCE5A Missense_Mutation p.C32Y 0.27 deleterious_low_confidence(0.04) unknown(0) TCGA-CG-5733-01 1 153533766 153533766 G A S100A2 3'UTR 0.21 TCGA-CG-5733-01 1 153536253 153536254 - C S100A2 Frame_Shift_Ins p.E33Gfs*20 0.29 TCGA-CG-5733-01 1 153732007 153732007 T C INTS3 Silent p.N385N 0.31 TCGA-CG-5733-01 1 153915482 153915482 G A DENND4B Missense_Mutation p.R148W 0.32 deleterious(0) probably_damaging(0.984) TCGA-CG-5733-01 1 154408549 154408549 C T IL6R Silent p.S304S 0.32 TCGA-CG-5733-01 1 154960591 154960591 A G FLAD1 Missense_Mutation p.Q128R 0.27 tolerated(0.25) benign(0.261) TCGA-CG-5733-01 1 155161828 155161828 G A MUC1 Missense_Mutation p.P102L 0.36 tolerated(0.2) benign(0.021) TCGA-CG-5733-01 1 155209816 155209817 - AC GBA Frame_Shift_Ins p.C57Sfs*35 0.24 TCGA-CG-5733-01 1 155287966 155287966 G A FDPS Missense_Mutation p.V190M 0.07 deleterious(0.05) benign(0.428) TCGA-CG-5733-01 1 155823172 155823172 T - GON4L Frame_Shift_Del p.M134* 0.25 TCGA-CG-5733-01 1 156020296 156020296 G A UBQLN4 Missense_Mutation p.A176V 0.37 deleterious(0.04) possibly_damaging(0.711) TCGA-CG-5733-01 1 1560532 1560532 G A MIB2 Missense_Mutation p.G345S 0.31 tolerated(0.11) possibly_damaging(0.451) TCGA-CG-5733-01 1 157666959 157666960 - T FCRL3 Frame_Shift_Ins p.R272Kfs*16 0.22 TCGA-CG-5733-01 1 157805636 157805637 - C CD5L Frame_Shift_Ins p.A122Gfs*4 0.27 TCGA-CG-5733-01 1 158368943 158368943 A - OR10T2 Frame_Shift_Del p.F105Sfs*14 0.24 TCGA-CG-5733-01 1 158548958 158548958 G T OR10X1 Silent p.I244I 0.32 TCGA-CG-5733-01 1 159505535 159505535 T C OR10J5 Missense_Mutation p.H88R 0.31 tolerated(0.6) benign(0) TCGA-CG-5733-01 1 160011433 160011433 C T KCNJ10 Missense_Mutation p.R297H 0.26 deleterious(0) probably_damaging(1) TCGA-CG-5733-01 1 160064939 160064939 A G IGSF8 Silent p.Y54Y 0.23 TCGA-CG-5733-01 1 160146362 160146362 C T ATP1A4 Missense_Mutation p.R854C 0.22 deleterious(0) probably_damaging(0.999) TCGA-CG-5733-01 1 160722026 160722026 A G SLAMF7 Silent p.E308E 0.42 TCGA-CG-5733-01 1 161140288 161140288 C - PPOX Frame_Shift_Del p.P361Lfs*5 0.21 TCGA-CG-5733-01 1 161183934 161183934 C T NDUFS2 Intron 0.24 TCGA-CG-5733-01 1 161989766 161989766 G T OLFML2B Silent p.P127P 0.29 TCGA-CG-5733-01 1 162343898 162343898 G T C1orf111 Silent p.A242A 0.28 TCGA-CG-5733-01 1 16263839 16263839 G A SPEN Missense_Mutation p.R3403H 0.18 benign(0.059) TCGA-CG-5733-01 1 16458607 16458607 G A EPHA2 Silent p.G759G 0.26 TCGA-CG-5733-01 1 165678737 165678737 C T RP11-466F5.10 5'Flank 0.40 TCGA-CG-5733-01 1 167992232 167992234 CTT - DCAF6 In_Frame_Del p.S521del 0.29 TCGA-CG-5733-01 1 16893734 16893734 A G NBPF1 Missense_Mutation p.Y927H 0.01 tolerated(0.07) probably_damaging(0.93) TCGA-CG-5733-01 1 169446628 169446628 T C SLC19A2 Missense_Mutation p.N191S 0.33 tolerated(0.09) benign(0.392) TCGA-CG-5733-01 1 169560682 169560682 C A SELP Missense_Mutation p.C807F 0.29 tolerated(0.09) benign(0.004) TCGA-CG-5733-01 1 170508634 170508634 C A GORAB Silent p.S140S 0.30 TCGA-CG-5733-01 1 170633439 170633439 C T PRRX1 Missense_Mutation p.T27I 0.19 deleterious_low_confidence(0.04) benign(0.026) TCGA-CG-5733-01 1 171227206 171227206 A G FMO1 5'UTR 0.08 TCGA-CG-5733-01 1 172410734 172410734 T - PIGC 3'UTR 0.25 TCGA-CG-5733-01 1 17331307 17331307 C T ATP13A2 Silent p.P119P 0.22 TCGA-CG-5733-01 1 175096159 175096159 C T TNN Missense_Mutation p.P995S 0.04 deleterious(0.02) possibly_damaging(0.483) TCGA-CG-5733-01 1 175331848 175331848 G A TNR Silent p.S935S 0.32 TCGA-CG-5733-01 1 176564398 176564398 C T PAPPA2 Missense_Mutation p.A553V 0.22 tolerated(0.18) benign(0.008) TCGA-CG-5733-01 1 17914103 17914103 C - ARHGEF10L Frame_Shift_Del p.P64Hfs*2 0.11 TCGA-CG-5733-01 1 181706711 181706711 G A CACNA1E Missense_Mutation p.C1158Y 0.26 deleterious(0) possibly_damaging(0.761) TCGA-CG-5733-01 1 182908622 182908622 A G SHCBP1L Silent p.L279L 0.36 TCGA-CG-5733-01 1 183190045 183190045 C T LAMC2 Missense_Mutation p.R197C 0.06 tolerated(0.05) benign(0.39) TCGA-CG-5733-01 1 183206601 183206601 G A LAMC2 Missense_Mutation p.A906T 0.24 tolerated(0.54) benign(0) TCGA-CG-5733-01 1 186037087 186037087 G A HMCN1 Nonsense_Mutation p.W2609* 0.29 TCGA-CG-5733-01 1 186277106 186277106 C T PRG4 Missense_Mutation p.T752I 0.26 unknown(0) TCGA-CG-5733-01 1 192545020 192545020 T G RGS1 Missense_Mutation p.L33R 0.29 tolerated(0.43) benign(0.039) TCGA-CG-5733-01 1 193149798 193149798 G A B3GALT2 Missense_Mutation p.P299S 0.33 tolerated(0.44) possibly_damaging(0.762) TCGA-CG-5733-01 1 19431150 19431150 C T UBR4 Missense_Mutation p.R4219H 0.30 benign(0.08) TCGA-CG-5733-01 1 19467923 19467923 G - UBR4 Frame_Shift_Del p.M2803Cfs*16 0.28 TCGA-CG-5733-01 1 19481550 19481550 G A UBR4 Missense_Mutation p.A2107V 0.32 possibly_damaging(0.889) TCGA-CG-5733-01 1 19553887 19553887 C T EMC1 Missense_Mutation p.V708I 0.26 tolerated(0.19) benign(0.03) TCGA-CG-5733-01 1 200880697 200880697 C T C1orf106 Missense_Mutation p.P359L 0.29 tolerated(0.11) benign(0.01) TCGA-CG-5733-01 1 201039450 201039450 G A CACNA1S Silent p.A770A 0.33 TCGA-CG-5733-01 1 201291200 201291200 G A PKP1 Missense_Mutation p.R502H 0.26 deleterious(0.01) probably_damaging(0.98) TCGA-CG-5733-01 1 201984366 201984366 G T ELF3 Missense_Mutation p.R344L 0.24 deleterious(0) probably_damaging(0.998) TCGA-CG-5733-01 1 202128510 202128510 C - PTPN7 Frame_Shift_Del p.R113Afs*7 0.42 TCGA-CG-5733-01 1 203138136 203138136 G T MYBPH Missense_Mutation p.L439I 0.27 deleterious(0) probably_damaging(0.999) TCGA-CG-5733-01 1 204214839 204214839 G A PLEKHA6 Missense_Mutation p.R646W 0.18 deleterious(0) possibly_damaging(0.893) TCGA-CG-5733-01 1 204438816 204438816 G T PIK3C2B Silent p.R39R 0.29 TCGA-CG-5733-01 1 204924033 204924033 C - NFASC Frame_Shift_Del p.P165Rfs*12 0.28 TCGA-CG-5733-01 1 207107960 207107960 G A PIGR Nonsense_Mutation p.Q504* 0.25 TCGA-CG-5733-01 1 208218053 208218053 G A PLXNA2 Missense_Mutation p.S1225L 0.26 tolerated(0.27) probably_damaging(0.979) TCGA-CG-5733-01 1 20987835 20987835 G A DDOST Silent p.P20P 0.22 TCGA-CG-5733-01 1 216052336 216052336 T C USH2A Silent p.L2776L 0.27 TCGA-CG-5733-01 1 222721257 222721257 G - HHIPL2 Frame_Shift_Del p.Q44Sfs*48 0.21 TCGA-CG-5733-01 1 222828037 222828037 A C MIA3 Missense_Mutation p.Q1503H 0.23 tolerated(0.08) benign(0.345) TCGA-CG-5733-01 1 223285360 223285360 G A TLR5 Silent p.L338L 0.28 TCGA-CG-5733-01 1 2234480 2234480 G A SKI Missense_Mutation p.A345T 0.32 tolerated(0.46) benign(0.001) TCGA-CG-5733-01 1 225591105 225591105 C T LBR Missense_Mutation p.R583Q 0.30 deleterious(0) probably_damaging(1) TCGA-CG-5733-01 1 226044616 226044616 C T TMEM63A Nonsense_Mutation p.W493* 0.26 TCGA-CG-5733-01 1 227170378 227170380 GAT - ADCK3 Splice_Site p.X286_splice 0.35 TCGA-CG-5733-01 1 22817980 22817981 - A ZBTB40 Frame_Shift_Ins p.L265Tfs*8 0.28 TCGA-CG-5733-01 1 228444500 228444500 G A OBSCN Silent p.S1578S 0.31 TCGA-CG-5733-01 1 228538569 228538569 G A OBSCN Missense_Mutation p.R7072Q 0.18 benign(0.129) TCGA-CG-5733-01 1 229653865 229653865 T - ABCB10 3'UTR 0.33 TCGA-CG-5733-01 1 230372168 230372168 T C GALNT2 Splice_Site p.X181_splice 0.33 TCGA-CG-5733-01 1 230839055 230839055 A - AGT Frame_Shift_Del p.F430Lfs*25 0.26 TCGA-CG-5733-01 1 23111124 23111124 G A EPHB2 Silent p.S122S 0.34 TCGA-CG-5733-01 1 23419547 23419547 C T LUZP1 Missense_Mutation p.R403Q 0.28 tolerated(0.09) possibly_damaging(0.822) TCGA-CG-5733-01 1 236715409 236715409 T C HEATR1 Splice_Site p.X2080_splice 0.24 TCGA-CG-5733-01 1 241767854 241767854 A G OPN3 Missense_Mutation p.V134A 0.24 tolerated(0.3) benign(0.074) TCGA-CG-5733-01 1 242045292 242045292 A - EXO1 Frame_Shift_Del p.D731Tfs*4 0.11 TCGA-CG-5733-01 1 24406652 24406652 G A MYOM3 Missense_Mutation p.R814W 0.25 deleterious(0) probably_damaging(0.988) TCGA-CG-5733-01 1 24669404 24669404 G A GRHL3 Silent p.S436S 0.29 TCGA-CG-5733-01 1 249150585 249150585 T C ZNF692 Silent p.P192P 0.24 TCGA-CG-5733-01 1 26603770 26603771 TG - CEP85 Frame_Shift_Del p.V760Hfs*20 0.22 TCGA-CG-5733-01 1 27100176 27100176 C - ARID1A Frame_Shift_Del p.P1326Rfs*155 0.25 TCGA-CG-5733-01 1 27943449 27943449 G A FGR Missense_Mutation p.R201C 0.30 deleterious(0) probably_damaging(0.999) TCGA-CG-5733-01 1 28293415 28293417 CTC - XKR8 In_Frame_Del p.L299del 0.42 TCGA-CG-5733-01 1 28819557 28819557 A - PHACTR4 Frame_Shift_Del p.S694Afs*24 0.24 TCGA-CG-5733-01 1 28823268 28823268 T - PHACTR4 3'UTR 0.30 TCGA-CG-5733-01 1 31437642 31437642 G A PUM1 Silent p.G734G 0.31 TCGA-CG-5733-01 1 32096305 32096305 T G PEF1 Missense_Mutation p.E255A 0.29 deleterious(0.01) possibly_damaging(0.761) TCGA-CG-5733-01 1 32573699 32573699 C A KPNA6 5'UTR 0.26 TCGA-CG-5733-01 1 36074928 36074928 C T PSMB2 Missense_Mutation p.A123T 0.34 tolerated(0.68) benign(0.073) TCGA-CG-5733-01 1 36769406 36769406 C T THRAP3 Missense_Mutation p.R886C 0.27 deleterious(0) possibly_damaging(0.738) TCGA-CG-5733-01 1 3688087 3688087 G T CCDC27 Nonstop_Mutation p.*657Yext*34 0.23 TCGA-CG-5733-01 1 37356650 37356650 C T GRIK3 Missense_Mutation p.A55T 0.29 tolerated(0.17) benign(0.034) TCGA-CG-5733-01 1 38227403 38227403 G A EPHA10 Missense_Mutation p.T175I 0.27 deleterious(0.01) possibly_damaging(0.524) TCGA-CG-5733-01 1 40980783 40980783 G - EXO5 Frame_Shift_Del p.E191Nfs*43 0.27 TCGA-CG-5733-01 1 44463398 44463398 G A SLC6A9 Missense_Mutation p.A647V 0.25 tolerated(0.69) benign(0.367) TCGA-CG-5733-01 1 45115605 45115605 C T RNF220 Silent p.C535C 0.23 TCGA-CG-5733-01 1 45120473 45120473 G T TMEM53 Missense_Mutation p.H198N 0.07 tolerated(0.77) benign(0.001) TCGA-CG-5733-01 1 45793585 45793585 C T HPDL Silent p.G255G 0.31 TCGA-CG-5733-01 1 48698138 48698138 G A SLC5A9 Missense_Mutation p.V358I 0.24 tolerated(0.2) benign(0.117) TCGA-CG-5733-01 1 52824825 52824825 G A CC2D1B Silent p.A377A 0.23 TCGA-CG-5733-01 1 52850933 52850933 G A ORC1 Silent p.L495L 0.27 TCGA-CG-5733-01 1 54389533 54389533 A G HSPB11 Intron 0.31 TCGA-CG-5733-01 1 55118746 55118746 G A MROH7 Silent p.L49L 0.28 TCGA-CG-5733-01 1 62979269 62979269 T - DOCK7 Frame_Shift_Del p.V1346Cfs*5 0.26 TCGA-CG-5733-01 1 6393549 6393549 C T ACOT7 Silent p.V176V 0.22 TCGA-CG-5733-01 1 64671363 64671363 G T UBE2U Missense_Mutation p.W36C 0.26 deleterious(0) probably_damaging(1) TCGA-CG-5733-01 1 6639380 6639380 G A TAS1R1 Silent p.E754E 0.27 TCGA-CG-5733-01 1 67207114 67207114 C T SGIP1 Missense_Mutation p.A820V 0.27 tolerated(0.11) benign(0.19) TCGA-CG-5733-01 1 71437291 71437291 A - PTGER3 Intron 0.16 TCGA-CG-5733-01 1 74671498 74671498 A - FPGT Frame_Shift_Del p.S591Afs*3 0.22 TCGA-CG-5733-01 1 8390958 8390958 G A SLC45A1 Missense_Mutation p.E469K 0.32 tolerated(0.25) benign(0.037) TCGA-CG-5733-01 1 86307793 86307793 G A COL24A1 Silent p.G1176G 0.04 TCGA-CG-5733-01 1 89735377 89735377 A - GBP5 Intron 0.35 TCGA-CG-5733-01 1 9171541 9171541 C - GPR157 Frame_Shift_Del p.V131Sfs*12 0.19 TCGA-CG-5733-01 1 94995983 94995983 A G F3 3'UTR 0.25 TCGA-CG-5733-01 1 95290108 95290108 T C SLC44A3 Silent p.Y65Y 0.26 TCGA-CG-5733-01 1 95657379 95657379 A G TMEM56 Silent p.R249R 0.05 TCGA-CG-5733-01 1 9809959 9809959 T - CLSTN1 Frame_Shift_Del p.N221Tfs*5 0.23 TCGA-CG-5733-01 20 13260475 13260475 C - ISM1 Frame_Shift_Del p.R194Gfs*82 0.35 TCGA-CG-5733-01 20 13773858 13773858 T C NDUFAF5 Silent p.I120I 0.05 TCGA-CG-5733-01 20 1444988 1444988 T C NSFL1C Silent p.R63R 0.26 TCGA-CG-5733-01 20 16729076 16729076 G A OTOR Silent p.P10P 0.29 TCGA-CG-5733-01 20 17587777 17587777 G T DSTN Nonsense_Mutation p.G162* 0.23 TCGA-CG-5733-01 20 18163930 18163930 T - CSRP2BP Frame_Shift_Del p.W660Gfs*35 0.26 TCGA-CG-5733-01 20 18541492 18541492 A G SEC23B 3'UTR 0.34 TCGA-CG-5733-01 20 23065495 23065495 G A CD93 Silent p.N445N 0.29 TCGA-CG-5733-01 20 23346303 23346303 C T GZF1 Missense_Mutation p.T428I 0.29 tolerated(0.14) probably_damaging(0.982) TCGA-CG-5733-01 20 25277218 25277218 T - PYGB 3'UTR 0.28 TCGA-CG-5733-01 20 30610484 30610484 G A CCM2L Missense_Mutation p.A319T 0.03 deleterious(0.01) possibly_damaging(0.896) TCGA-CG-5733-01 20 31656644 31656644 A G BPIFB3 Silent p.L338L 0.07 TCGA-CG-5733-01 20 31661412 31661412 G T BPIFB3 3'UTR 0.23 TCGA-CG-5733-01 20 3362099 3362099 A G C20orf194 Silent p.Y70Y 0.25 TCGA-CG-5733-01 20 34214277 34214277 G A CPNE1 Silent p.T505T 0.25 TCGA-CG-5733-01 20 35521567 35521567 C T TLDC2 3'UTR 0.38 TCGA-CG-5733-01 20 35668582 35668582 C T RBL1 Missense_Mutation p.R626Q 0.27 tolerated(0.05) probably_damaging(0.96) TCGA-CG-5733-01 20 37146233 37146233 C - RALGAPB Frame_Shift_Del p.P381Hfs*11 0.27 TCGA-CG-5733-01 20 3897602 3897602 C T PANK2 Nonsense_Mutation p.R481* 0.30 TCGA-CG-5733-01 20 39791364 39791364 C T PLCG1 Missense_Mutation p.T227M 0.23 tolerated(0.24) benign(0.029) TCGA-CG-5733-01 20 43379051 43379051 G A KCNK15 Missense_Mutation p.A189T 0.35 deleterious(0) probably_damaging(0.982) TCGA-CG-5733-01 20 43926646 43926646 C T MATN4 Silent p.S497S 0.23 TCGA-CG-5733-01 20 43926973 43926973 G A MATN4 Silent p.G421G 0.35 TCGA-CG-5733-01 20 44003782 44003782 G A TP53TG5 Missense_Mutation p.A222V 0.31 deleterious(0) possibly_damaging(0.607) TCGA-CG-5733-01 20 44569462 44569462 G A PCIF1 Silent p.V134V 0.29 TCGA-CG-5733-01 20 44645043 44645043 C T MMP9 3'UTR 0.36 TCGA-CG-5733-01 20 44979495 44979501 AGCAGAT - SLC35C2 Frame_Shift_Del p.H289Rfs*8 0.23 TCGA-CG-5733-01 20 45905096 45905096 G A ZMYND8 Missense_Mutation p.A481V 0.12 deleterious_low_confidence(0) possibly_damaging(0.526) TCGA-CG-5733-01 20 46282351 46282351 T - NCOA3 3'UTR 0.13 TCGA-CG-5733-01 20 47266655 47266655 G T PREX1 Silent p.P969P 0.29 TCGA-CG-5733-01 20 47734382 47734382 C T STAU1 Missense_Mutation p.V481I 0.39 tolerated(0.36) benign(0.002) TCGA-CG-5733-01 20 4776521 4776521 C T RASSF2 Missense_Mutation p.R76H 0.32 deleterious(0.02) probably_damaging(0.939) TCGA-CG-5733-01 20 55033652 55033652 G A CASS4 Missense_Mutation p.S737N 0.23 deleterious(0) probably_damaging(1) TCGA-CG-5733-01 20 55803373 55803373 G T BMP7 Silent p.R175R 0.06 TCGA-CG-5733-01 20 55840772 55840772 A G BMP7 Missense_Mutation p.F136S 0.20 deleterious(0) probably_damaging(0.999) TCGA-CG-5733-01 20 57769451 57769451 C - ZNF831 Frame_Shift_Del p.L1128Sfs*50 0.21 TCGA-CG-5733-01 20 57769496 57769496 A G ZNF831 Missense_Mutation p.Q1141R 0.27 tolerated(0.47) possibly_damaging(0.641) TCGA-CG-5733-01 20 58348498 58348498 C T PHACTR3 Missense_Mutation p.R306C 0.24 deleterious(0) probably_damaging(0.999) TCGA-CG-5733-01 20 6017905 6017905 A - CRLS1 3'UTR 0.28 TCGA-CG-5733-01 20 60503309 60503309 C T CDH4 Silent p.N611N 0.27 TCGA-CG-5733-01 20 60904112 60904112 C T LAMA5 Splice_Site p.X1412_splice 0.31 TCGA-CG-5733-01 20 61959716 61959716 A G COL20A1 Missense_Mutation p.N1216S 0.28 tolerated(0.75) benign(0.002) TCGA-CG-5733-01 20 62126345 62126345 A G EEF1A2 Missense_Mutation p.V145A 0.20 deleterious_low_confidence(0) benign(0.082) TCGA-CG-5733-01 20 8782772 8782772 C - PLCB1 Intron 0.30 TCGA-CG-5733-01 21 11098836 11098836 C T BAGE2 RNA 0.17 TCGA-CG-5733-01 21 15352090 15352090 C T ANKRD20A11P RNA 0.16 TCGA-CG-5733-01 21 16338330 16338330 T - NRIP1 Frame_Shift_Del p.E729Rfs*5 0.23 TCGA-CG-5733-01 21 33975375 33975375 A G C21orf59 Intron 0.30 TCGA-CG-5733-01 21 34921957 34921957 G A SON Silent p.T140T 0.22 TCGA-CG-5733-01 21 37597930 37597930 G A DOPEY2 Missense_Mutation p.A480T 0.29 tolerated(1) benign(0) TCGA-CG-5733-01 21 37603085 37603085 C T DOPEY2 Missense_Mutation p.T668M 0.19 tolerated(0.12) benign(0.011) TCGA-CG-5733-01 21 38117346 38117346 C - SIM2 Frame_Shift_Del p.L497* 0.21 TCGA-CG-5733-01 21 43411449 43411449 G A ZBTB21 Missense_Mutation p.T919M 0.33 deleterious(0.02) probably_damaging(0.927) TCGA-CG-5733-01 21 43897412 43897412 G A RSPH1 Missense_Mutation p.P239L 0.31 tolerated(0.27) benign(0.006) TCGA-CG-5733-01 21 45175603 45175603 A G PDXK Missense_Mutation p.T262A 0.36 tolerated(0.81) benign(0.004) TCGA-CG-5733-01 21 45833838 45833838 C A TRPM2 Silent p.P1009P 0.10 TCGA-CG-5733-01 21 46932171 46932171 G A COL18A1 Silent p.T1473T 0.17 TCGA-CG-5733-01 21 47754538 47754538 A G PCNT Silent p.P165P 0.04 TCGA-CG-5733-01 21 47855992 47855992 A G PCNT Missense_Mutation p.E2976G 0.07 possibly_damaging(0.727) TCGA-CG-5733-01 22 18300751 18300751 G A MICAL3 Missense_Mutation p.P1559L 0.30 benign(0) TCGA-CG-5733-01 22 19026239 19026239 T C DGCR2 3'UTR 0.30 TCGA-CG-5733-01 22 19898899 19898899 C T TXNRD2 Splice_Site p.X221_splice 0.26 TCGA-CG-5733-01 22 20100980 20100980 G A TRMT2A Silent p.D469D 0.23 TCGA-CG-5733-01 22 20819491 20819491 G A KLHL22 Missense_Mutation p.R256W 0.27 deleterious(0) probably_damaging(0.983) TCGA-CG-5733-01 22 20825700 20825700 G T KLHL22 Silent p.T110T 0.36 TCGA-CG-5733-01 22 22285570 22285570 G A PPM1F Nonsense_Mutation p.Q281* 0.18 TCGA-CG-5733-01 22 23742494 23742495 - G ZDHHC8P1 RNA 0.44 TCGA-CG-5733-01 22 24034818 24034818 A - RGL4 Intron 0.34 TCGA-CG-5733-01 22 24036430 24036430 A G RGL4 Intron 0.26 TCGA-CG-5733-01 22 26423430 26423430 A G MYO18B Missense_Mutation p.E2497G 0.31 tolerated(0.1) benign(0.046) TCGA-CG-5733-01 22 26937534 26937534 C T TPST2 Silent p.A21A 0.38 TCGA-CG-5733-01 22 28146839 28146839 A G MN1 3'UTR 0.26 TCGA-CG-5733-01 22 29754808 29754808 G A AP1B1 Silent p.C144C 0.32 TCGA-CG-5733-01 22 30639806 30639808 AGG - LIF In_Frame_Del p.L148del 0.34 TCGA-CG-5733-01 22 30886002 30886002 G A SEC14L4 3'UTR 0.21 TCGA-CG-5733-01 22 32302472 32302472 A G DEPDC5 Missense_Mutation p.S1592G 0.25 deleterious_low_confidence(0) benign(0.1) TCGA-CG-5733-01 22 32794005 32794006 - T RTCB Frame_Shift_Ins p.M246Nfs*6 0.24 TCGA-CG-5733-01 22 33700243 33700243 G A LARGE Missense_Mutation p.P568S 0.27 deleterious(0) probably_damaging(1) TCGA-CG-5733-01 22 36537420 36537420 C T APOL3 Missense_Mutation p.G346D 0.31 deleterious(0) probably_damaging(0.999) TCGA-CG-5733-01 22 38165162 38165162 C T TRIOBP Nonsense_Mutation p.Q2235* 0.24 TCGA-CG-5733-01 22 38698968 38698968 G A CSNK1E Silent p.N78N 0.26 TCGA-CG-5733-01 22 40417800 40417800 G - FAM83F Frame_Shift_Del p.E431Rfs*40 0.30 TCGA-CG-5733-01 22 40814864 40814864 C T MKL1 Missense_Mutation p.M526I 0.34 deleterious(0.03) possibly_damaging(0.577) TCGA-CG-5733-01 22 40816542 40816542 G - MKL1 Frame_Shift_Del p.P307Qfs*30 0.35 TCGA-CG-5733-01 22 42908940 42908940 G A RRP7A Silent p.A273A 0.14 TCGA-CG-5733-01 22 43926756 43926756 C T EFCAB6 Missense_Mutation p.R1441H 0.26 deleterious(0.02) probably_damaging(1) TCGA-CG-5733-01 22 45719228 45719228 G A FAM118A Missense_Mutation p.V74I 0.29 tolerated(0.38) benign(0.005) TCGA-CG-5733-01 22 46318884 46318884 G A WNT7B Missense_Mutation p.A301V 0.25 tolerated(0.48) benign(0.027) TCGA-CG-5733-01 22 46725365 46725365 C T GTSE1 Silent p.H679H 0.03 TCGA-CG-5733-01 22 46931227 46931227 C - CELSR1 Frame_Shift_Del p.G614Afs*54 0.26 TCGA-CG-5733-01 22 50437729 50437730 - G IL17REL Frame_Shift_Ins p.F198Lfs*2 0.27 TCGA-CG-5733-01 22 51065135 51065135 G A ARSA Silent p.R246R 0.30 TCGA-CG-5733-01 2 102998141 102998141 A G IL18R1 Silent p.L229L 0.23 TCGA-CG-5733-01 2 105716250 105716251 - TA MRPS9 3'UTR 0.27 TCGA-CG-5733-01 2 109367742 109367742 T C RANBP2 Silent p.G432G 0.25 TCGA-CG-5733-01 2 113591101 113591101 G A IL1B Nonsense_Mutation p.R51* 0.36 TCGA-CG-5733-01 2 114198989 114198989 G A CBWD2 Silent p.A72A 0.28 TCGA-CG-5733-01 2 128238536 128238536 A - IWS1 3'UTR 0.31 TCGA-CG-5733-01 2 128322852 128322852 G A MYO7B Missense_Mutation p.M59I 0.27 deleterious(0) benign(0.445) TCGA-CG-5733-01 2 132240260 132240260 A G TUBA3D Missense_Mutation p.M398V 0.24 deleterious_low_confidence(0) probably_damaging(0.963) TCGA-CG-5733-01 2 132285712 132285712 C A CCDC74A Missense_Mutation p.L57M 0.30 deleterious(0) probably_damaging(0.999) TCGA-CG-5733-01 2 133403742 133403742 C T LYPD1 Missense_Mutation p.C101Y 0.37 deleterious(0) probably_damaging(0.989) TCGA-CG-5733-01 2 1497702 1497702 G A TPO Missense_Mutation p.D633N 0.24 deleterious(0) probably_damaging(0.999) TCGA-CG-5733-01 2 149864536 149864536 C A KIF5C Silent p.S835S 0.41 TCGA-CG-5733-01 2 152132079 152132079 G C NMI Missense_Mutation p.R185G 0.29 tolerated(0.07) possibly_damaging(0.657) TCGA-CG-5733-01 2 152470851 152470851 G A NEB Missense_Mutation p.T3847I 0.27 benign(0.023) TCGA-CG-5733-01 2 152520210 152520210 G - NEB Frame_Shift_Del p.P1872Rfs*25 0.26 TCGA-CG-5733-01 2 154800913 154800913 G A GALNT13 5'UTR 0.24 TCGA-CG-5733-01 2 157185013 157185013 A G NR4A2 Silent p.C299C 0.24 TCGA-CG-5733-01 2 158178061 158178062 - ATC ERMN In_Frame_Ins p.D205dup 0.20 TCGA-CG-5733-01 2 160697448 160697448 G A LY75-CD302 Missense_Mutation p.T1100M 0.05 deleterious(0.01) probably_damaging(0.994) TCGA-CG-5733-01 2 165551508 165551508 C T COBLL1 Silent p.P836P 0.28 TCGA-CG-5733-01 2 165987821 165987821 C T SCN3A Missense_Mutation p.S833N 0.12 deleterious(0.01) possibly_damaging(0.842) TCGA-CG-5733-01 2 170103223 170103223 C T LRP2 Missense_Mutation p.G1061D 0.30 benign(0.111) TCGA-CG-5733-01 2 170668386 170668386 T - SSB 3'UTR 0.23 TCGA-CG-5733-01 2 174987938 174987938 T C OLA1 Missense_Mutation p.E233G 0.22 deleterious(0) probably_damaging(0.924) TCGA-CG-5733-01 2 176948225 176948225 A C EVX2 Missense_Mutation p.S94A 0.12 tolerated(0.13) benign(0.002) TCGA-CG-5733-01 2 178592398 178592398 G A PDE11A Silent p.F677F 0.32 TCGA-CG-5733-01 2 179401671 179401671 G T TTN Missense_Mutation p.P33389T 0.08 TCGA-CG-5733-01 2 179583963 179583963 T C TTN Missense_Mutation p.T8052A 0.29 TCGA-CG-5733-01 2 179594857 179594857 A G TTN Silent p.V6090V 0.28 TCGA-CG-5733-01 2 179612275 179612275 T C TTN Intron 0.09 TCGA-CG-5733-01 2 179616558 179616558 A - TTN Intron 0.26 TCGA-CG-5733-01 2 179989230 179989230 G A SESTD1 Missense_Mutation p.A343V 0.31 tolerated(0.13) benign(0.003) TCGA-CG-5733-01 2 182543334 182543334 C T NEUROD1 Missense_Mutation p.G85D 0.07 deleterious(0) probably_damaging(0.998) TCGA-CG-5733-01 2 183641958 183641958 C T DNAJC10 3'UTR 0.35 TCGA-CG-5733-01 2 191797646 191797646 T - GLS Intron 0.38 TCGA-CG-5733-01 2 192265123 192265123 C T MYO1B Missense_Mutation p.R771W 0.32 deleterious(0) probably_damaging(0.913) TCGA-CG-5733-01 2 196723270 196723270 G A DNAH7 Silent p.C2665C 0.22 TCGA-CG-5733-01 2 196729215 196729215 C T DNAH7 Silent p.A2388A 0.30 TCGA-CG-5733-01 2 197183522 197183522 G A HECW2 Nonsense_Mutation p.Q698* 0.21 TCGA-CG-5733-01 2 197183576 197183576 C T HECW2 Missense_Mutation p.E680K 0.28 deleterious_low_confidence(0.02) benign(0.004) TCGA-CG-5733-01 2 198334842 198334842 C T COQ10B Missense_Mutation p.R166C 0.23 deleterious(0.01) probably_damaging(1) TCGA-CG-5733-01 2 198621225 198621225 T C BOLL Missense_Mutation p.Q231R 0.32 deleterious(0.03) probably_damaging(0.984) TCGA-CG-5733-01 2 198622118 198622118 T C BOLL Missense_Mutation p.T199A 0.27 tolerated(0.58) benign(0) TCGA-CG-5733-01 2 200789807 200789807 G A C2orf69 Missense_Mutation p.R119H 0.31 tolerated(0.56) benign(0.004) TCGA-CG-5733-01 2 201434523 201434523 C T SGOL2 Missense_Mutation p.S204L 0.05 tolerated(1) benign(0) TCGA-CG-5733-01 2 201722492 201722492 G A CLK1 Nonsense_Mutation p.R303* 0.26 TCGA-CG-5733-01 2 205986445 205986445 G A PARD3B Missense_Mutation p.V313I 0.30 tolerated(0.39) benign(0.002) TCGA-CG-5733-01 2 207006783 207006783 G A NDUFS1 Missense_Mutation p.R396C 0.09 deleterious(0) possibly_damaging(0.66) TCGA-CG-5733-01 2 208420450 208420450 C T CREB1 Missense_Mutation p.P31S 0.10 tolerated(0.29) benign(0.049) TCGA-CG-5733-01 2 216236885 216236885 G T FN1 Missense_Mutation p.P2154H 0.24 tolerated(0.41) possibly_damaging(0.866) TCGA-CG-5733-01 2 218762658 218762658 A G TNS1 Missense_Mutation p.C11R 0.20 tolerated(0.37) probably_damaging(0.998) TCGA-CG-5733-01 2 218925585 218925585 A G CXCR2P1 RNA 0.36 TCGA-CG-5733-01 2 218925711 218925711 A G CXCR2P1 RNA 0.12 TCGA-CG-5733-01 2 219252307 219252307 T - SLC11A1 Frame_Shift_Del p.F199Lfs*5 0.29 TCGA-CG-5733-01 2 220078361 220078361 A G ABCB6 Missense_Mutation p.Y536H 0.27 deleterious(0) probably_damaging(0.999) TCGA-CG-5733-01 2 220348655 220348655 G T SPEG Missense_Mutation p.G2157V 0.29 benign(0.253) TCGA-CG-5733-01 2 220352920 220352920 C - SPEG Frame_Shift_Del p.P2584Qfs*35 0.21 TCGA-CG-5733-01 2 220414512 220414512 C T TMEM198 Missense_Mutation p.A340V 0.27 tolerated(0.3) benign(0) TCGA-CG-5733-01 2 220466796 220466796 G T STK11IP Missense_Mutation p.Q154H 0.34 tolerated(0.08) probably_damaging(0.999) TCGA-CG-5733-01 2 220496734 220496734 A G SLC4A3 Missense_Mutation p.K313E 0.29 deleterious(0.03) benign(0.329) TCGA-CG-5733-01 2 228564113 228564113 C T SLC19A3 Missense_Mutation p.M106I 0.32 tolerated(0.2) probably_damaging(0.992) TCGA-CG-5733-01 2 230655860 230655860 T - TRIP12 Frame_Shift_Del p.K1433Sfs*18 0.27 TCGA-CG-5733-01 2 233410459 233410459 A G CHRNG 3'UTR 0.25 TCGA-CG-5733-01 2 233421145 233421145 G - EIF4E2 Frame_Shift_Del p.D15Tfs*93 0.20 TCGA-CG-5733-01 2 233899156 233899156 G A NEU2 Missense_Mutation p.A178T 0.26 deleterious(0.01) probably_damaging(1) TCGA-CG-5733-01 2 234750577 234750579 GAT - HJURP In_Frame_Del p.I283del 0.34 TCGA-CG-5733-01 2 235404565 235404568 CATC - ARL4C 3'UTR 0.29 TCGA-CG-5733-01 2 238434402 238434402 G A MLPH Silent p.P278P 0.26 TCGA-CG-5733-01 2 240078398 240078398 G A HDAC4 Missense_Mutation p.P228L 0.29 deleterious(0) possibly_damaging(0.734) TCGA-CG-5733-01 2 24253699 24253699 C T C2orf44 3'UTR 0.42 TCGA-CG-5733-01 2 242572334 242572334 C T THAP4 Missense_Mutation p.R413H 0.14 tolerated(0.53) benign(0.387) TCGA-CG-5733-01 2 242815482 242815482 C - CXXC11 3'UTR 0.27 TCGA-CG-5733-01 2 24307265 24307265 G A TP53I3 5'UTR 0.25 TCGA-CG-5733-01 2 24930579 24930579 A G NCOA1 Missense_Mutation p.Q747R 0.26 tolerated(0.1) probably_damaging(0.985) TCGA-CG-5733-01 2 24975018 24975020 AAC - NCOA1 In_Frame_Del p.N1294del 0.26 TCGA-CG-5733-01 2 25013233 25013233 T C PTRHD1 3'UTR 0.32 TCGA-CG-5733-01 2 26750774 26750774 C T OTOF Silent p.P51P 0.24 TCGA-CG-5733-01 2 27716887 27716887 C T FNDC4 Missense_Mutation p.G122S 0.39 tolerated(0.88) possibly_damaging(0.513) TCGA-CG-5733-01 2 27730607 27730607 G A GCKR Silent p.T401T 0.23 TCGA-CG-5733-01 2 31467249 31467249 G A EHD3 Missense_Mutation p.A113T 0.35 deleterious(0.03) possibly_damaging(0.529) TCGA-CG-5733-01 2 32466128 32466128 A G NLRC4 Missense_Mutation p.M775T 0.22 deleterious(0.01) benign(0.197) TCGA-CG-5733-01 2 3483008 3483009 GT - TRAPPC12 Frame_Shift_Del p.C663Sfs*87 0.26 TCGA-CG-5733-01 2 45169609 45169609 C T SIX3 Silent p.C122C 0.39 TCGA-CG-5733-01 2 46986855 46986855 G A SOCS5 Missense_Mutation p.E396K 0.27 deleterious(0) probably_damaging(0.988) TCGA-CG-5733-01 2 48035330 48035330 T C FBXO11 Missense_Mutation p.E904G 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.857) TCGA-CG-5733-01 2 50318473 50318473 G A NRXN1 Missense_Mutation p.R1276C 0.31 deleterious(0) probably_damaging(0.987) TCGA-CG-5733-01 2 62099382 62099382 T C CCT4 Silent p.T442T 0.27 TCGA-CG-5733-01 2 63169987 63169987 T C EHBP1 Silent p.G475G 0.29 TCGA-CG-5733-01 2 68385209 68385209 A T PNO1 Missense_Mutation p.D48V 0.32 deleterious(0.02) benign(0.221) TCGA-CG-5733-01 2 71191573 71191573 C - ATP6V1B1 Frame_Shift_Del p.I386Sfs*10 0.30 TCGA-CG-5733-01 2 73268057 73268057 G A SFXN5 Missense_Mutation p.R59C 0.27 tolerated(0.06) benign(0.062) TCGA-CG-5733-01 2 74475528 74475528 C T SLC4A5 Missense_Mutation p.S580N 0.29 deleterious(0) probably_damaging(1) TCGA-CG-5733-01 2 74689928 74689928 T C MOGS Missense_Mutation p.I330V 0.31 deleterious(0.02) benign(0.027) TCGA-CG-5733-01 2 74779707 74779707 G A LOXL3 Silent p.L19L 0.40 TCGA-CG-5733-01 2 77748890 77748890 C T LRRTM4 Intron 0.07 TCGA-CG-5733-01 2 86067102 86067102 A - ST3GAL5 3'UTR 0.31 TCGA-CG-5733-01 2 89265997 89265997 G A IGKV1-6 Silent p.C45C 0.03 TCGA-CG-5733-01 2 89309670 89309670 A C IGKV1-9 Missense_Mutation p.Y54D 0.25 tolerated(0.13) benign(0.016) TCGA-CG-5733-01 2 9531313 9531313 G A ASAP2 Missense_Mutation p.V836M 0.34 tolerated(0.27) benign(0.214) TCGA-CG-5733-01 2 9558782 9558782 T A ITGB1BP1 Missense_Mutation p.Q15H 0.27 deleterious_low_confidence(0) unknown(0) TCGA-CG-5733-01 2 95847751 95847751 C T ZNF2 Missense_Mutation p.T393M 0.04 deleterious(0) probably_damaging(0.999) TCGA-CG-5733-01 2 96687157 96687157 C - GPAT2 3'Flank 0.26 TCGA-CG-5733-01 2 97498336 97498336 C T CNNM3 Missense_Mutation p.R703W 0.32 deleterious_low_confidence(0) probably_damaging(0.937) TCGA-CG-5733-01 2 98844745 98844745 G T VWA3B Missense_Mutation p.E700D 0.28 deleterious(0) probably_damaging(0.91) TCGA-CG-5733-01 2 99261956 99261956 T - MGAT4A Frame_Shift_Del p.N275Ifs*12 0.27 TCGA-CG-5733-01 3 101283606 101283619 TTTTACAGGGGTTT - TRMT10C Splice_Site 0.17 TCGA-CG-5733-01 3 10401789 10401789 C T ATP2B2 Missense_Mutation p.A560T 0.38 deleterious(0.03) benign(0.282) TCGA-CG-5733-01 3 109049268 109049268 G A DPPA4 Intron 0.45 TCGA-CG-5733-01 3 10979960 10979960 A G SLC6A11 Missense_Mutation p.S591G 0.28 tolerated(0.27) benign(0.004) TCGA-CG-5733-01 3 112724442 112724442 A G C3orf17 Missense_Mutation p.S549P 0.21 tolerated(0.48) benign(0.009) TCGA-CG-5733-01 3 113679760 113679761 - A ZDHHC23 3'UTR 0.29 TCGA-CG-5733-01 3 114058003 114058003 G - ZBTB20 Frame_Shift_Del p.P692Lfs*43 0.37 TCGA-CG-5733-01 3 119434506 119434506 G A MAATS1 Missense_Mutation p.V200I 0.28 tolerated(0.07) benign(0.008) TCGA-CG-5733-01 3 121206287 121206287 C T POLQ Missense_Mutation p.A1831T 0.26 deleterious(0.04) probably_damaging(1) TCGA-CG-5733-01 3 121647836 121647836 C T SLC15A2 Missense_Mutation p.P450L 0.26 tolerated(0.2) benign(0.006) TCGA-CG-5733-01 3 121838326 121838326 G A CD86 Missense_Mutation p.R312H 0.28 tolerated(0.42) benign(0) TCGA-CG-5733-01 3 122631702 122631702 G - SEMA5B Frame_Shift_Del p.Q959Rfs*147 0.34 TCGA-CG-5733-01 3 124437898 124437898 G A RP11-71H17.7 5'Flank 0.33 TCGA-CG-5733-01 3 126062510 126062510 A - KLF15 3'UTR 0.31 TCGA-CG-5733-01 3 126138594 126138595 - A CCDC37 Frame_Shift_Ins p.A285Gfs*14 0.26 TCGA-CG-5733-01 3 126178522 126178522 T - ZXDC Frame_Shift_Del p.K729Sfs*19 0.29 TCGA-CG-5733-01 3 129289882 129289882 C T PLXND1 Splice_Site p.X1200_splice 0.22 TCGA-CG-5733-01 3 129694799 129694799 G A TRH Missense_Mutation p.R47H 0.33 tolerated(0.28) probably_damaging(0.948) TCGA-CG-5733-01 3 130289947 130289947 A G COL6A6 Missense_Mutation p.D896G 0.27 tolerated(0.12) possibly_damaging(0.582) TCGA-CG-5733-01 3 130398201 130398201 G A PIK3R4 Silent p.I1345I 0.30 TCGA-CG-5733-01 3 131197993 131197993 T C MRPL3 Intron 0.26 TCGA-CG-5733-01 3 133647384 133647384 C T C3orf36 Silent p.A88A 0.20 TCGA-CG-5733-01 3 134880926 134880926 C T EPHB1 Missense_Mutation p.R497W 0.28 deleterious(0) benign(0.056) TCGA-CG-5733-01 3 134968296 134968296 T C EPHB1 Missense_Mutation p.F937L 0.21 tolerated(0.23) benign(0.074) TCGA-CG-5733-01 3 135870677 135870677 C T MSL2 Missense_Mutation p.S349N 0.19 deleterious(0.04) probably_damaging(0.991) TCGA-CG-5733-01 3 13655590 13655590 G T FBLN2 Missense_Mutation p.C552F 0.29 deleterious(0) probably_damaging(1) TCGA-CG-5733-01 3 136574264 136574264 T G SLC35G2 Missense_Mutation p.L321R 0.02 deleterious(0) probably_damaging(0.99) TCGA-CG-5733-01 3 13679441 13679441 C T FBLN2 3'UTR 0.06 TCGA-CG-5733-01 3 138665150 138665150 C T FOXL2 Missense_Mutation p.E139K 0.40 deleterious(0) possibly_damaging(0.834) TCGA-CG-5733-01 3 139173610 139173610 G A RBP2 Silent p.R105R 0.28 TCGA-CG-5733-01 3 141164024 141164024 A - ZBTB38 Frame_Shift_Del p.M934* 0.25 TCGA-CG-5733-01 3 141499527 141499527 T C GRK7 Silent p.H308H 0.25 TCGA-CG-5733-01 3 142840569 142840569 A G CHST2 Missense_Mutation p.K304R 0.33 deleterious(0) probably_damaging(0.992) TCGA-CG-5733-01 3 148890140 148890140 C T HPS3 3'UTR 0.23 TCGA-CG-5733-01 3 149678725 149678725 C T RNF13 Missense_Mutation p.S327L 0.34 deleterious(0.01) benign(0.221) TCGA-CG-5733-01 3 150917110 150917110 A - GPR171 Frame_Shift_Del p.Y22Ifs*2 0.29 TCGA-CG-5733-01 3 151056359 151056359 A G P2RY12 Missense_Mutation p.L92P 0.29 deleterious(0) probably_damaging(0.995) TCGA-CG-5733-01 3 151072930 151072930 C T MED12L Missense_Mutation p.A772V 0.33 tolerated(0.61) benign(0.001) TCGA-CG-5733-01 3 151531947 151531947 C A AADAC 5'UTR 0.30 TCGA-CG-5733-01 3 152553984 152553984 G A P2RY1 Missense_Mutation p.S138N 0.27 deleterious(0) probably_damaging(0.992) TCGA-CG-5733-01 3 156867298 156867298 T C CCNL1 Missense_Mutation p.Q370R 0.05 tolerated(0.83) benign(0.395) TCGA-CG-5733-01 3 160119879 160119879 A G SMC4 Missense_Mutation p.K106E 0.07 deleterious(0) possibly_damaging(0.816) TCGA-CG-5733-01 3 160142781 160142781 C T SMC4 Silent p.L818L 0.31 TCGA-CG-5733-01 3 160395131 160395131 T C ARL14 5'UTR 0.31 TCGA-CG-5733-01 3 164754250 164754250 T C SI Silent p.L814L 0.32 TCGA-CG-5733-01 3 164786978 164786978 A G SI Silent p.I87I 0.25 TCGA-CG-5733-01 3 165548072 165548072 C A BCHE Silent p.L250L 0.24 TCGA-CG-5733-01 3 168861605 168861605 A - MECOM Frame_Shift_Del p.Y7Tfs*3 0.29 TCGA-CG-5733-01 3 170218995 170218995 C T SLC7A14 Silent p.A148A 0.38 TCGA-CG-5733-01 3 170885050 170885050 T - TNIK Frame_Shift_Del p.K261Nfs*11 0.23 TCGA-CG-5733-01 3 172013305 172013305 G A FNDC3B Splice_Site p.X334_splice 0.24 TCGA-CG-5733-01 3 178927980 178927980 T C PIK3CA Missense_Mutation p.C420R 0.28 tolerated(0.21) possibly_damaging(0.893) TCGA-CG-5733-01 3 178960921 178960921 T - KCNMB3 Frame_Shift_Del p.K204Sfs*16 0.17 TCGA-CG-5733-01 3 183097179 183097179 C T MCF2L2 Missense_Mutation p.A61T 0.29 deleterious(0.03) possibly_damaging(0.703) TCGA-CG-5733-01 3 183273148 183273148 C - KLHL6 Splice_Site p.X98_splice 0.29 TCGA-CG-5733-01 3 183639017 183639017 C T ABCC5 3'UTR 0.26 TCGA-CG-5733-01 3 183882993 183882993 G A DVL3 Missense_Mutation p.R231Q 0.40 deleterious(0.02) possibly_damaging(0.602) TCGA-CG-5733-01 3 18390730 18390730 A - SATB1 Frame_Shift_Del p.S774Qfs*2 0.24 TCGA-CG-5733-01 3 184570321 184570321 G A VPS8 Missense_Mutation p.D263N 0.23 deleterious(0.02) possibly_damaging(0.87) TCGA-CG-5733-01 3 186954047 186954047 G A MASP1 Nonsense_Mutation p.R538* 0.31 TCGA-CG-5733-01 3 193153486 193153486 A G ATP13A4 Missense_Mutation p.M907T 0.05 deleterious(0.01) possibly_damaging(0.535) TCGA-CG-5733-01 3 194080146 194080146 C T LRRC15 Missense_Mutation p.A549T 0.29 tolerated(0.08) probably_damaging(0.978) TCGA-CG-5733-01 3 194147932 194147932 C T ATP13A3 Silent p.S999S 0.23 TCGA-CG-5733-01 3 194947467 194947467 G A XXYLT1 Missense_Mutation p.S208L 0.23 deleterious(0) probably_damaging(0.999) TCGA-CG-5733-01 3 20212215 20212216 - T SGOL1 Frame_Shift_Ins p.R522Kfs*29 0.25 TCGA-CG-5733-01 3 24206919 24206919 C A THRB Intron 0.29 TCGA-CG-5733-01 3 29910399 29910399 C T RBMS3 Nonsense_Mutation p.R230* 0.18 TCGA-CG-5733-01 3 3085297 3085297 A C CNTN4 Missense_Mutation p.N907T 0.12 deleterious(0) benign(0) TCGA-CG-5733-01 3 30880509 30880509 T C GADL1 Missense_Mutation p.S295G 0.15 tolerated(1) benign(0) TCGA-CG-5733-01 3 33249394 33249394 A G SUSD5 Silent p.S105S 0.25 TCGA-CG-5733-01 3 38182912 38182912 A G MYD88 3'UTR 0.10 TCGA-CG-5733-01 3 38317132 38317132 C T SLC22A13 Missense_Mutation p.R331W 0.27 deleterious(0.03) possibly_damaging(0.466) TCGA-CG-5733-01 3 39141917 39141917 C T GORASP1 Missense_Mutation p.G215D 0.23 tolerated(0.13) benign(0.003) TCGA-CG-5733-01 3 42576492 42576492 C T VIPR1 Silent p.L346L 0.31 TCGA-CG-5733-01 3 42632334 42632334 C T SS18L2 5'UTR 0.36 TCGA-CG-5733-01 3 44488004 44488004 T C ZNF445 3'UTR 0.22 TCGA-CG-5733-01 3 44598791 44598791 G A ZKSCAN7 Missense_Mutation p.M84I 0.21 tolerated(0.06) possibly_damaging(0.841) TCGA-CG-5733-01 3 45435951 45435951 T G LARS2 Silent p.A2A 0.08 TCGA-CG-5733-01 3 46571410 46571410 G A LRRC2 Missense_Mutation p.P253L 0.32 deleterious(0) probably_damaging(0.984) TCGA-CG-5733-01 3 47891514 47891514 C T DHX30 Silent p.S1163S 0.21 TCGA-CG-5733-01 3 48200921 48200922 - TC CDC25A Frame_Shift_Ins p.D449Efs*19 0.26 TCGA-CG-5733-01 3 49140833 49140833 C T QARS Missense_Mutation p.R154Q 0.34 deleterious(0.01) possibly_damaging(0.474) TCGA-CG-5733-01 3 49694830 49694830 C T BSN Missense_Mutation p.T2614M 0.33 benign(0.194) TCGA-CG-5733-01 3 51417604 51417604 C - DOCK3 Frame_Shift_Del p.P1852Qfs*45 0.24 TCGA-CG-5733-01 3 52027966 52027966 G A RPL29 Silent p.L93L 0.29 TCGA-CG-5733-01 3 52475387 52475387 A G SEMA3G Missense_Mutation p.S236P 0.25 tolerated(0.05) benign(0.008) TCGA-CG-5733-01 3 52539927 52539927 G A STAB1 Missense_Mutation p.R575Q 0.24 deleterious(0.01) possibly_damaging(0.819) TCGA-CG-5733-01 3 52613112 52613113 AC - PBRM1 Frame_Shift_Del p.V1139Lfs*16 0.27 TCGA-CG-5733-01 3 52712570 52712570 T G PBRM1 Missense_Mutation p.K61T 0.30 deleterious(0.03) possibly_damaging(0.645) TCGA-CG-5733-01 3 58118574 58118575 - CA FLNB Frame_Shift_Ins p.V1512Qfs*2 0.22 TCGA-CG-5733-01 3 58629428 58629428 T C FAM3D Missense_Mutation p.N95D 0.24 tolerated(0.14) benign(0.398) TCGA-CG-5733-01 3 58817562 58817562 C A C3orf67 Missense_Mutation p.Q424H 0.25 tolerated(0.11) benign(0.209) TCGA-CG-5733-01 3 63825343 63825343 G A THOC7 Silent p.S42S 0.06 TCGA-CG-5733-01 3 64619547 64619547 T - ADAMTS9 Frame_Shift_Del p.N622Mfs*7 0.25 TCGA-CG-5733-01 3 66434452 66434452 G A LRIG1 Silent p.A678A 0.36 TCGA-CG-5733-01 3 77666706 77666706 T A ROBO2 Silent p.T1128T 0.32 TCGA-CG-5733-01 3 97677936 97677936 C T MINA Missense_Mutation p.E214K 0.26 deleterious(0.02) possibly_damaging(0.786) TCGA-CG-5733-01 4 1066733 1066733 C T RNF212 Missense_Mutation p.D275N 0.29 deleterious_low_confidence(0) benign(0.104) TCGA-CG-5733-01 4 108871407 108871407 G A CYP2U1 Missense_Mutation p.R488Q 0.24 deleterious(0) probably_damaging(0.954) TCGA-CG-5733-01 4 114823494 114823494 T - ARSJ Frame_Shift_Del p.K579Rfs*30 0.32 TCGA-CG-5733-01 4 119163208 119163208 A G NDST3 Missense_Mutation p.D768G 0.31 deleterious(0) probably_damaging(0.999) TCGA-CG-5733-01 4 128651810 128651810 C T SLC25A31 Missense_Mutation p.A37V 0.38 tolerated(0.25) benign(0.106) TCGA-CG-5733-01 4 128751951 128751951 A G HSPA4L Silent p.S775S 0.22 TCGA-CG-5733-01 4 129121797 129121797 G T LARP1B Missense_Mutation p.W762C 0.24 deleterious(0.02) possibly_damaging(0.593) TCGA-CG-5733-01 4 1389154 1389154 G A CRIPAK Silent p.P285P 0.35 TCGA-CG-5733-01 4 145567902 145567903 - G HHIP Frame_Shift_Ins p.E27Gfs*57 0.20 TCGA-CG-5733-01 4 146436032 146436032 C T SMAD1 Silent p.C89C 0.32 TCGA-CG-5733-01 4 147561827 147561827 T G POU4F2 Missense_Mutation p.I366S 0.26 deleterious(0) possibly_damaging(0.53) TCGA-CG-5733-01 4 153249385 153249385 G A FBXW7 Missense_Mutation p.R465C 0.24 deleterious(0) probably_damaging(1) TCGA-CG-5733-01 4 153549556 153549556 C T TMEM154 3'UTR 0.36 TCGA-CG-5733-01 4 155254496 155254496 C T DCHS2 Missense_Mutation p.G456D 0.24 tolerated(0.22) possibly_damaging(0.654) TCGA-CG-5733-01 4 16026930 16026930 C T PROM1 Missense_Mutation p.G172D 0.31 deleterious(0) probably_damaging(1) TCGA-CG-5733-01 4 160271311 160271311 A - RAPGEF2 Frame_Shift_Del p.I1087Ffs*98 0.12 TCGA-CG-5733-01 4 166795140 166795140 C T TLL1 Silent p.C28C 0.31 TCGA-CG-5733-01 4 17838932 17838932 G A NCAPG Missense_Mutation p.V754M 0.23 tolerated(0.05) probably_damaging(0.977) TCGA-CG-5733-01 4 178911801 178911801 A - LINC01098 3'UTR 0.20 TCGA-CG-5733-01 4 183959379 183959379 A - FAM92A1P2 RNA 0.85 TCGA-CG-5733-01 4 186112159 186112159 A G KIAA1430 Silent p.L64L 0.26 TCGA-CG-5733-01 4 186267704 186267705 - A SNX25 Frame_Shift_Ins p.V573Sfs*7 0.27 TCGA-CG-5733-01 4 187509732 187509732 G T FAT1 3'UTR 0.31 TCGA-CG-5733-01 4 1906092 1906092 T C WHSC1 Silent p.Y249Y 0.27 TCGA-CG-5733-01 4 20715115 20715115 G A PACRGL Missense_Mutation p.V188I 0.21 tolerated(0.15) benign(0.022) TCGA-CG-5733-01 4 2306773 2306773 C T ZFYVE28 Missense_Mutation p.D432N 0.34 tolerated_low_confidence(0.29) benign(0.004) TCGA-CG-5733-01 4 36231038 36231038 A C ARAP2 Missense_Mutation p.L24R 0.24 tolerated(0.08) benign(0.428) TCGA-CG-5733-01 4 38691476 38691476 C - KLF3 Frame_Shift_Del p.P226Rfs*52 0.30 TCGA-CG-5733-01 4 38775306 38775306 C T TLR10 Missense_Mutation p.A636T 0.23 deleterious(0.03) benign(0.019) TCGA-CG-5733-01 4 39109197 39109197 G A KLHL5 Missense_Mutation p.V558I 0.07 deleterious(0.02) probably_damaging(0.992) TCGA-CG-5733-01 4 39310612 39310612 T - RFC1 Frame_Shift_Del p.N510Mfs*33 0.26 TCGA-CG-5733-01 4 40800843 40800843 T - NSUN7 Frame_Shift_Del p.P443Qfs*36 0.19 TCGA-CG-5733-01 4 44450036 44450036 C T KCTD8 Missense_Mutation p.V169I 0.36 tolerated(0.33) benign(0.011) TCGA-CG-5733-01 4 47455198 47455198 G A COMMD8 Nonsense_Mutation p.R137* 0.27 TCGA-CG-5733-01 4 47942795 47942795 C T CNGA1 Missense_Mutation p.V286I 0.26 tolerated(0.23) benign(0.041) TCGA-CG-5733-01 4 48595988 48595988 T C FRYL Missense_Mutation p.S432G 0.22 tolerated(0.57) benign(0.264) TCGA-CG-5733-01 4 48621329 48621329 A G FRYL Missense_Mutation p.F125L 0.19 deleterious(0.02) possibly_damaging(0.754) TCGA-CG-5733-01 4 5399935 5399935 G A STK32B Missense_Mutation p.D146N 0.03 deleterious(0.01) possibly_damaging(0.848) TCGA-CG-5733-01 4 55573423 55573423 A G KIT Missense_Mutation p.Y362C 0.39 deleterious(0.03) possibly_damaging(0.879) TCGA-CG-5733-01 4 56883935 56883935 C T CEP135 Missense_Mutation p.S975L 0.23 deleterious(0.01) benign(0.392) TCGA-CG-5733-01 4 57907077 57907077 G - IGFBP7 Frame_Shift_Del p.K167Rfs*13 0.29 TCGA-CG-5733-01 4 62862015 62862015 G A LPHN3 Nonsense_Mutation p.W1013* 0.20 TCGA-CG-5733-01 4 6302928 6302928 C T WFS1 Missense_Mutation p.S469L 0.33 deleterious(0.02) possibly_damaging(0.81) TCGA-CG-5733-01 4 68355753 68355753 A - CENPC Frame_Shift_Del p.S868Lfs*5 0.24 TCGA-CG-5733-01 4 68442967 68442967 C T STAP1 Missense_Mutation p.T118I 0.19 deleterious(0) possibly_damaging(0.907) TCGA-CG-5733-01 4 69973972 69973972 A G UGT2B7 Silent p.R414R 0.34 TCGA-CG-5733-01 4 7043252 7043252 C T CCDC96 Missense_Mutation p.A472T 0.29 tolerated(0.06) possibly_damaging(0.894) TCGA-CG-5733-01 4 76891521 76891521 T - SDAD1 Frame_Shift_Del p.K275Rfs*15 0.27 TCGA-CG-5733-01 4 79308595 79308595 C A FRAS1 Missense_Mutation p.Q1239K 0.05 benign(0.043) TCGA-CG-5733-01 4 79791998 79791998 G A BMP2K Silent p.P431P 0.23 TCGA-CG-5733-01 4 8079394 8079394 A G ABLIM2 Silent p.C212C 0.21 TCGA-CG-5733-01 4 81196160 81196160 T C FGF5 Silent p.H151H 0.28 TCGA-CG-5733-01 4 82090857 82090857 C A PRKG2 Missense_Mutation p.A270S 0.25 deleterious(0.01) possibly_damaging(0.844) TCGA-CG-5733-01 4 88416218 88416218 T C SPARCL1 Missense_Mutation p.N39S 0.33 tolerated(0.11) benign(0.015) TCGA-CG-5733-01 4 89425506 89425506 C T HERC5 Silent p.P902P 0.28 TCGA-CG-5733-01 4 99064238 99064238 C A STPG2 Missense_Mutation p.G22C 0.14 deleterious(0) probably_damaging(1) TCGA-CG-5733-01 4 9943581 9943581 C T SLC2A9 Missense_Mutation p.R257H 0.38 tolerated(0.07) benign(0.027) TCGA-CG-5733-01 5 101631731 101631731 G A SLCO4C1 Missense_Mutation p.S79L 0.22 tolerated(0.23) benign(0.001) TCGA-CG-5733-01 5 10227606 10227606 G T FAM173B Missense_Mutation p.R217S 0.36 tolerated(0.94) benign(0.001) TCGA-CG-5733-01 5 112103087 112103087 G T APC Missense_Mutation p.R141M 0.06 probably_damaging(0.996) TCGA-CG-5733-01 5 112860771 112860771 A G YTHDC2 Silent p.K124K 0.24 TCGA-CG-5733-01 5 122713213 122713213 T - CEP120 Frame_Shift_Del p.K738Rfs*29 0.28 TCGA-CG-5733-01 5 131398085 131398085 C T IL3 Silent p.S95S 0.30 TCGA-CG-5733-01 5 132334371 132334372 - GAG ZCCHC10 In_Frame_Ins p.S139dup 0.13 TCGA-CG-5733-01 5 132534817 132534817 C - FSTL4 Frame_Shift_Del p.T834Pfs*59 0.35 TCGA-CG-5733-01 5 133328691 133328691 G A VDAC1 Missense_Mutation p.P5S 0.30 deleterious(0.03) possibly_damaging(0.69) TCGA-CG-5733-01 5 133473836 133473836 G A TCF7 Silent p.A176A 0.24 TCGA-CG-5733-01 5 133948427 133948427 A G SAR1B Silent p.I66I 0.29 TCGA-CG-5733-01 5 134907389 134907389 T C CXCL14 3'UTR 0.29 TCGA-CG-5733-01 5 137451362 137451362 T - NME5 3'UTR 0.37 TCGA-CG-5733-01 5 137501568 137501568 T G BRD8 Missense_Mutation p.E409D 0.28 tolerated(0.38) benign(0.145) TCGA-CG-5733-01 5 138268591 138268591 C T CTNNA1 Intron 0.30 TCGA-CG-5733-01 5 13913929 13913929 A C DNAH5 Missense_Mutation p.F487V 0.18 possibly_damaging(0.637) TCGA-CG-5733-01 5 140168055 140168055 C A PCDHA1 Missense_Mutation p.P727H 0.24 deleterious_low_confidence(0.01) benign(0.18) TCGA-CG-5733-01 5 140180869 140180869 C T PCDHA3 Silent p.G29G 0.27 TCGA-CG-5733-01 5 140182434 140182434 T G PCDHA3 Missense_Mutation p.L551R 0.29 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CG-5733-01 5 140215070 140215070 G A PCDHA7 Missense_Mutation p.V368I 0.33 deleterious_low_confidence(0.04) benign(0.228) TCGA-CG-5733-01 5 140230119 140230119 C T PCDHA9 Missense_Mutation p.S680L 0.24 tolerated_low_confidence(0.11) benign(0.009) TCGA-CG-5733-01 5 140256419 140256419 G A PCDHA12 Silent p.A454A 0.37 TCGA-CG-5733-01 5 140531448 140531448 C G PCDHB6 Missense_Mutation p.P537R 0.26 deleterious(0) probably_damaging(0.998) TCGA-CG-5733-01 5 140563826 140563826 G A PCDHB16 Silent p.P564P 0.09 TCGA-CG-5733-01 5 140762928 140762928 A G PCDHGA7 Silent p.L154L 0.33 TCGA-CG-5733-01 5 140789521 140789521 C T PCDHGB6 Silent p.P584P 0.28 TCGA-CG-5733-01 5 140798879 140798879 G A PCDHGB7 Missense_Mutation p.G485S 0.33 tolerated(0.12) probably_damaging(0.918) TCGA-CG-5733-01 5 140811594 140811594 C T PCDHGA12 Missense_Mutation p.T423I 0.33 tolerated_low_confidence(0.1) benign(0.418) TCGA-CG-5733-01 5 14477004 14477004 T - TRIO Frame_Shift_Del p.L2031* 0.27 TCGA-CG-5733-01 5 145665677 145665677 A - RBM27 3'UTR 0.28 TCGA-CG-5733-01 5 145894693 145894693 T - GPR151 Frame_Shift_Del p.K328Nfs*59 0.27 TCGA-CG-5733-01 5 146619223 146619223 C G STK32A Missense_Mutation p.P9R 0.22 tolerated(0.51) benign(0.001) TCGA-CG-5733-01 5 149782828 149782828 G T CD74 Missense_Mutation p.P225T 0.22 deleterious(0.04) probably_damaging(0.985) TCGA-CG-5733-01 5 150029083 150029083 G A SYNPO Missense_Mutation p.V660M 0.26 tolerated(0.14) benign(0.02) TCGA-CG-5733-01 5 150723790 150723790 A C SLC36A2 Missense_Mutation p.M68R 0.43 deleterious(0) benign(0.435) TCGA-CG-5733-01 5 157182397 157182397 G A LSM11 3'UTR 0.46 TCGA-CG-5733-01 5 169021159 169021161 AAG - SPDL1 In_Frame_Del p.E183del 0.43 TCGA-CG-5733-01 5 170863205 170863205 C T FGF18 Missense_Mutation p.R60W 0.18 deleterious(0.01) probably_damaging(1) TCGA-CG-5733-01 5 171517345 171517345 T - STK10 Frame_Shift_Del p.T526Pfs*15 0.09 TCGA-CG-5733-01 5 173380104 173380104 G A CPEB4 Silent p.A597A 0.31 TCGA-CG-5733-01 5 176070250 176070250 G A EIF4E1B Silent p.L61L 0.28 TCGA-CG-5733-01 5 176675269 176675269 A - NSD1 Frame_Shift_Del p.M1531Cfs*43 0.44 TCGA-CG-5733-01 5 179193438 179193438 G A MAML1 Missense_Mutation p.R476Q 0.30 tolerated(0.06) benign(0.312) TCGA-CG-5733-01 5 180687467 180687467 G A TRIM52 Silent p.N116N 0.03 TCGA-CG-5733-01 5 23527981 23527981 C T PRDM9 3'UTR 0.23 TCGA-CG-5733-01 5 251215 251215 C T SDHA Missense_Mutation p.R554W 0.34 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-CG-5733-01 5 26906221 26906221 C T CDH9 Missense_Mutation p.A220T 0.27 deleterious(0.01) probably_damaging(0.997) TCGA-CG-5733-01 5 31983467 31983467 A G PDZD2 Missense_Mutation p.N228S 0.24 tolerated(1) benign(0.004) TCGA-CG-5733-01 5 31995817 31995817 G A PDZD2 Missense_Mutation p.A372T 0.38 deleterious(0.03) possibly_damaging(0.809) TCGA-CG-5733-01 5 33937053 33937053 G A RXFP3 Missense_Mutation p.G70R 0.40 tolerated(0.06) benign(0.001) TCGA-CG-5733-01 5 353927 353927 A G AHRR Missense_Mutation p.S53G 0.22 deleterious(0.03) possibly_damaging(0.467) TCGA-CG-5733-01 5 35874637 35874637 A - IL7R Frame_Shift_Del p.R267Gfs*28 0.25 TCGA-CG-5733-01 5 37002815 37002815 A C NIPBL Missense_Mutation p.N1239T 0.08 tolerated(0.2) benign(0.021) TCGA-CG-5733-01 5 41018876 41018876 G A MROH2B Nonsense_Mutation p.R864* 0.42 TCGA-CG-5733-01 5 41382280 41382280 G A PLCXD3 Missense_Mutation p.H154Y 0.10 deleterious(0) probably_damaging(0.997) TCGA-CG-5733-01 5 5303565 5303565 G A ADAMTS16 Missense_Mutation p.A992T 0.42 tolerated(1) benign(0.006) TCGA-CG-5733-01 5 53751959 53751959 T C HSPB3 Missense_Mutation p.F114L 0.31 deleterious(0) possibly_damaging(0.896) TCGA-CG-5733-01 5 56178223 56178223 A G MAP3K1 Missense_Mutation p.T1066A 0.34 tolerated_low_confidence(0.13) benign(0) TCGA-CG-5733-01 5 6652020 6652020 C T SRD5A1 Missense_Mutation p.A120V 0.30 deleterious(0) probably_damaging(0.995) TCGA-CG-5733-01 5 68490522 68490522 C T CENPH Missense_Mutation p.A80V 0.25 tolerated(0.24) benign(0.005) TCGA-CG-5733-01 5 71757157 71757157 C T ZNF366 Missense_Mutation p.R56Q 0.32 tolerated_low_confidence(0.17) benign(0.043) TCGA-CG-5733-01 5 74026203 74026203 C A GFM2 Silent p.G536G 0.24 TCGA-CG-5733-01 5 79733691 79733692 - T ZFYVE16 Frame_Shift_Ins p.L398Ffs*5 0.23 TCGA-CG-5733-01 5 80382721 80382721 G A RASGRF2 Missense_Mutation p.V447M 0.06 deleterious(0) probably_damaging(0.932) TCGA-CG-5733-01 5 82817797 82817797 G T VCAN Missense_Mutation p.K1224N 0.28 deleterious(0.02) benign(0.347) TCGA-CG-5733-01 6 102503432 102503432 A - GRIK2 Frame_Shift_Del p.N849Tfs*14 0.33 TCGA-CG-5733-01 6 105609533 105609533 C T POPDC3 Silent p.L84L 0.19 TCGA-CG-5733-01 6 107390480 107390480 G A BEND3 Silent p.L639L 0.30 TCGA-CG-5733-01 6 107390687 107390687 T C BEND3 Missense_Mutation p.I570V 0.25 tolerated(0.14) probably_damaging(0.977) TCGA-CG-5733-01 6 109786988 109786988 G A ZBTB24 3'UTR 0.28 TCGA-CG-5733-01 6 11105335 11105335 G A ERVFRD-1 Missense_Mutation p.A70V 0.05 tolerated(0.42) benign(0.01) TCGA-CG-5733-01 6 111527861 111527861 G A SLC16A10 Missense_Mutation p.V337I 0.30 tolerated(1) benign(0.005) TCGA-CG-5733-01 6 111695488 111695488 T - REV3L Frame_Shift_Del p.N1357Ifs*12 0.22 TCGA-CG-5733-01 6 111695520 111695520 A G REV3L Silent p.F1346F 0.08 TCGA-CG-5733-01 6 116442752 116442752 T - COL10A1 Frame_Shift_Del p.K176Rfs*9 0.25 TCGA-CG-5733-01 6 116758028 116758028 A G DSE Silent p.Q799Q 0.22 TCGA-CG-5733-01 6 123673709 123673709 C A TRDN Missense_Mutation p.E448D 0.21 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-CG-5733-01 6 126080753 126080753 G A HEY2 Silent p.A273A 0.25 TCGA-CG-5733-01 6 127796641 127796641 G A SOGA3 Missense_Mutation p.R844C 0.31 deleterious(0) probably_damaging(0.917) TCGA-CG-5733-01 6 128291226 128291226 A - PTPRK 3'UTR 0.33 TCGA-CG-5733-01 6 130407306 130407306 A - L3MBTL3 Frame_Shift_Del p.M479* 0.26 TCGA-CG-5733-01 6 132022010 132022010 A - OR2A4 Frame_Shift_Del p.C178Vfs*37 0.18 TCGA-CG-5733-01 6 134349987 134349987 C T SLC2A12 Missense_Mutation p.V326I 0.37 tolerated(0.32) possibly_damaging(0.801) TCGA-CG-5733-01 6 135787084 135787084 C A AHI1 Missense_Mutation p.R206M 0.09 deleterious(0) benign(0.305) TCGA-CG-5733-01 6 136600998 136600998 G A BCLAF1 Missense_Mutation p.R3C 0.11 deleterious_low_confidence(0) unknown(0) TCGA-CG-5733-01 6 142691311 142691311 C T GPR126 Silent p.A150A 0.23 TCGA-CG-5733-01 6 144093509 144093509 C T PHACTR2 Silent p.Y449Y 0.32 TCGA-CG-5733-01 6 144183260 144183260 C A LTV1 Missense_Mutation p.L315I 0.21 tolerated(0.13) benign(0.014) TCGA-CG-5733-01 6 150004580 150004580 C A LATS1 Missense_Mutation p.A549S 0.27 tolerated(0.47) benign(0.219) TCGA-CG-5733-01 6 151151939 151151939 G A PLEKHG1 Silent p.P564P 0.32 TCGA-CG-5733-01 6 151687420 151687420 G A ZBTB2 Missense_Mutation p.R261W 0.28 deleterious(0.01) probably_damaging(0.998) TCGA-CG-5733-01 6 152453304 152453304 A G SYNE1 Missense_Mutation p.S8683P 0.05 probably_damaging(0.96) TCGA-CG-5733-01 6 152737700 152737700 C A SYNE1 Nonsense_Mutation p.E1958* 0.27 TCGA-CG-5733-01 6 152783719 152783720 - T SYNE1 Intron 0.26 TCGA-CG-5733-01 6 152783944 152783944 C T SYNE1 Missense_Mutation p.A727T 0.31 benign(0.032) TCGA-CG-5733-01 6 155574159 155574159 G A TIAM2 Silent p.A1399A 0.27 TCGA-CG-5733-01 6 158487683 158487683 T C SYNJ2 Intron 0.23 TCGA-CG-5733-01 6 158492692 158492692 G A SYNJ2 Missense_Mutation p.A667T 0.32 deleterious(0) probably_damaging(0.995) TCGA-CG-5733-01 6 160679811 160679811 C T SLC22A2 5'UTR 0.35 TCGA-CG-5733-01 6 163510322 163510322 C T PACRG Silent p.I165I 0.05 TCGA-CG-5733-01 6 165693544 165693544 C T C6orf118 3'UTR 0.11 TCGA-CG-5733-01 6 170592537 170592537 C T DLL1 Silent p.T610T 0.35 TCGA-CG-5733-01 6 18122226 18122226 A - NHLRC1 Frame_Shift_Del p.F204Lfs*28 0.31 TCGA-CG-5733-01 6 24357791 24357791 C T DCDC2 Missense_Mutation p.R63K 0.32 deleterious(0) probably_damaging(0.999) TCGA-CG-5733-01 6 26234786 26234786 C G HIST1H1D Missense_Mutation p.A126P 0.30 tolerated(0.1) unknown(0) TCGA-CG-5733-01 6 26502055 26502055 G A BTN1A1 Missense_Mutation p.R106H 0.12 tolerated(0.32) benign(0.01) TCGA-CG-5733-01 6 27420090 27420090 T - ZNF184 Frame_Shift_Del p.K416Nfs*50 0.25 TCGA-CG-5733-01 6 27806590 27806590 C T HIST1H2BN Missense_Mutation p.P51S 0.30 deleterious_low_confidence(0.02) benign(0.063) TCGA-CG-5733-01 6 28094637 28094637 C T ZSCAN16 Missense_Mutation p.T155I 0.23 tolerated(0.35) benign(0.218) TCGA-CG-5733-01 6 28134627 28134627 G T ZNF192P1 RNA 0.25 TCGA-CG-5733-01 6 28213420 28213420 G A ZKSCAN4 Missense_Mutation p.T371I 0.28 deleterious(0) probably_damaging(1) TCGA-CG-5733-01 6 28219831 28219831 G A ZKSCAN4 5'UTR 0.05 TCGA-CG-5733-01 6 28554244 28554244 T C SCAND3 Missense_Mutation p.E84G 0.28 deleterious_low_confidence(0) probably_damaging(0.975) TCGA-CG-5733-01 6 29599375 29599375 A G GABBR1 Silent p.G29G 0.09 TCGA-CG-5733-01 6 30552301 30552302 AG - ABCF1 Frame_Shift_Del p.K451Vfs*26 0.15 TCGA-CG-5733-01 6 30688217 30688217 A - TUBB 5'UTR 0.40 TCGA-CG-5733-01 6 30889738 30889738 T C VARS2 Missense_Mutation p.L621P 0.19 deleterious(0) probably_damaging(0.998) TCGA-CG-5733-01 6 30890692 30890692 C T VARS2 Silent p.H738H 0.19 TCGA-CG-5733-01 6 31750063 31750063 G A VARS Missense_Mutation p.R717W 0.32 deleterious(0) probably_damaging(0.999) TCGA-CG-5733-01 6 32147867 32147867 G A RNF5 Missense_Mutation p.V137I 0.32 tolerated(0.36) benign(0.015) TCGA-CG-5733-01 6 32908589 32908589 T C XXbac-BPG181M17.5 Missense_Mutation p.Q31R 0.24 tolerated_low_confidence(0.05) benign(0.413) TCGA-CG-5733-01 6 33652652 33652652 G A ITPR3 Missense_Mutation p.E1747K 0.29 tolerated(0.07) benign(0.065) TCGA-CG-5733-01 6 34825148 34825148 C T UHRF1BP1 Missense_Mutation p.L492F 0.25 deleterious(0.01) probably_damaging(0.95) TCGA-CG-5733-01 6 35258107 35258107 G A ZNF76 Missense_Mutation p.R166H 0.03 tolerated(0.06) benign(0.006) TCGA-CG-5733-01 6 36106213 36106213 G A MAPK13 Missense_Mutation p.D252N 0.52 deleterious(0.01) probably_damaging(0.997) TCGA-CG-5733-01 6 36298038 36298038 G T C6orf222 Missense_Mutation p.L144I 0.35 tolerated(0.44) benign(0.013) TCGA-CG-5733-01 6 36334250 36334250 C - ETV7 3'UTR 0.41 TCGA-CG-5733-01 6 38903419 38903419 C T DNAH8 Missense_Mutation p.R3620W 0.25 probably_damaging(1) TCGA-CG-5733-01 6 39304212 39304212 T C KIF6 3'UTR 0.30 TCGA-CG-5733-01 6 4031881 4031881 A - PRPF4B Frame_Shift_Del p.K46Rfs*58 0.22 TCGA-CG-5733-01 6 41657475 41657475 G T TFEB Silent p.P181P 0.06 TCGA-CG-5733-01 6 42231171 42231171 T C TRERF1 Missense_Mutation p.K591E 0.25 deleterious(0.03) benign(0.292) TCGA-CG-5733-01 6 43114416 43114416 C - PTK7 Frame_Shift_Del p.L910Sfs*13 0.21 TCGA-CG-5733-01 6 43155673 43155673 G A CUL9 Missense_Mutation p.A602T 0.25 tolerated(0.05) benign(0.002) TCGA-CG-5733-01 6 43181594 43181594 C T CUL9 Missense_Mutation p.R1878C 0.32 deleterious(0) probably_damaging(0.984) TCGA-CG-5733-01 6 43267525 43267525 G A SLC22A7 Intron 0.29 TCGA-CG-5733-01 6 43415559 43415559 C T ABCC10 Silent p.R1281R 0.34 TCGA-CG-5733-01 6 44797534 44797534 G A SUPT3H 3'UTR 0.26 TCGA-CG-5733-01 6 47650252 47650252 G A GPR111 Missense_Mutation p.A653T 0.33 deleterious(0) probably_damaging(1) TCGA-CG-5733-01 6 49936566 49936566 T - DEFB113 Frame_Shift_Del p.T25Qfs*? 0.25 TCGA-CG-5733-01 6 51897950 51897950 C T PKHD1 Missense_Mutation p.R1081H 0.27 tolerated(0.54) benign(0) TCGA-CG-5733-01 6 51913367 51913367 G A PKHD1 Missense_Mutation p.T777M 0.25 deleterious(0.02) benign(0.189) TCGA-CG-5733-01 6 51930836 51930836 C - PKHD1 Frame_Shift_Del p.G273Efs*46 0.19 TCGA-CG-5733-01 6 52999038 52999038 G A GCM1 Missense_Mutation p.R54W 0.32 deleterious(0) probably_damaging(1) TCGA-CG-5733-01 6 5404836 5404836 C T FARS2 Missense_Mutation p.A225V 0.08 tolerated(0.35) benign(0.003) TCGA-CG-5733-01 6 64423103 64423103 A G PHF3 Silent p.S1873S 0.09 TCGA-CG-5733-01 6 70942332 70942332 C T COL9A1 Silent p.P819P 0.47 TCGA-CG-5733-01 6 72809676 72809678 AGG - RIMS1 Splice_Site p.X154_splice 0.27 TCGA-CG-5733-01 6 74492412 74492413 - G CD109 Frame_Shift_Ins p.S682* 0.25 TCGA-CG-5733-01 6 75843658 75843658 C A COL12A1 Missense_Mutation p.L1860F 0.27 probably_damaging(0.999) TCGA-CG-5733-01 6 79655834 79655834 C T PHIP Missense_Mutation p.R1505Q 0.04 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-CG-5733-01 6 79770253 79770253 C T PHIP Silent p.A127A 0.21 TCGA-CG-5733-01 6 80720630 80720630 A - TTK Frame_Shift_Del p.K192Sfs*18 0.25 TCGA-CG-5733-01 6 82924026 82924027 - T IBTK Frame_Shift_Ins p.G708Rfs*5 0.20 TCGA-CG-5733-01 6 82950191 82950191 T C IBTK Missense_Mutation p.M5V 0.30 tolerated(1) benign(0) TCGA-CG-5733-01 6 83877831 83877831 A - DOPEY1 Frame_Shift_Del p.I2450* 0.28 TCGA-CG-5733-01 6 83884156 83884156 T A PGM3 Missense_Mutation p.Q421H 0.31 deleterious(0.05) benign(0) TCGA-CG-5733-01 6 85472393 85472393 C T TBX18 Silent p.P122P 0.27 TCGA-CG-5733-01 6 87725557 87725557 C - HTR1E Frame_Shift_Del p.P170Lfs*26 0.29 TCGA-CG-5733-01 6 88239291 88239291 G A RARS2 Silent p.L283L 0.22 TCGA-CG-5733-01 6 89888394 89888394 T - GABRR1 3'UTR 0.35 TCGA-CG-5733-01 6 89890064 89890064 C T GABRR1 Missense_Mutation p.V365I 0.07 deleterious(0.01) possibly_damaging(0.591) TCGA-CG-5733-01 6 94068094 94068094 C A EPHA7 Missense_Mutation p.D290Y 0.24 deleterious(0.03) possibly_damaging(0.604) TCGA-CG-5733-01 7 100192820 100192820 C T FBXO24 Missense_Mutation p.P388S 0.42 deleterious(0.01) possibly_damaging(0.641) TCGA-CG-5733-01 7 100680596 100680596 C T MUC17 Missense_Mutation p.P1967S 0.43 unknown(0) TCGA-CG-5733-01 7 102098296 102098296 C T ALKBH4 Missense_Mutation p.E152K 0.18 deleterious(0) probably_damaging(0.999) TCGA-CG-5733-01 7 102584826 102584826 G A LRRC17 Silent p.K366K 0.23 TCGA-CG-5733-01 7 104787044 104787044 G A SRPK2 Missense_Mutation p.P228L 0.37 deleterious(0) probably_damaging(0.985) TCGA-CG-5733-01 7 106797745 106797745 G A PRKAR2B Missense_Mutation p.A367T 0.41 deleterious(0) probably_damaging(0.99) TCGA-CG-5733-01 7 106800139 106800140 - T PRKAR2B 3'UTR 0.22 TCGA-CG-5733-01 7 107542201 107542201 T G DLD Missense_Mutation p.V46G 0.05 deleterious(0) probably_damaging(1) TCGA-CG-5733-01 7 107599833 107599833 A G LAMB1 Missense_Mutation p.C851R 0.05 deleterious(0) probably_damaging(1) TCGA-CG-5733-01 7 111409728 111409728 C T DOCK4 Missense_Mutation p.A1220T 0.36 deleterious(0) benign(0.26) TCGA-CG-5733-01 7 116955140 116955140 G T WNT2 Missense_Mutation p.N191K 0.22 deleterious(0) probably_damaging(0.997) TCGA-CG-5733-01 7 123508376 123508376 G A HYAL4 Missense_Mutation p.V17I 0.15 tolerated_low_confidence(0.62) benign(0) TCGA-CG-5733-01 7 127637804 127637804 T C SND1 Intron 0.44 TCGA-CG-5733-01 7 131825463 131825463 A G PLXNA4 Missense_Mutation p.F1778S 0.17 deleterious(0) probably_damaging(0.999) TCGA-CG-5733-01 7 135047689 135047689 G T CNOT4 Missense_Mutation p.P697H 0.48 deleterious_low_confidence(0) possibly_damaging(0.874) TCGA-CG-5733-01 7 138603298 138603298 A G KIAA1549 Silent p.H358H 0.44 TCGA-CG-5733-01 7 138774379 138774379 A - ZC3HAV1 Frame_Shift_Del p.F145Lfs*49 0.27 TCGA-CG-5733-01 7 138969242 138969242 G T UBN2 Missense_Mutation p.Q1197H 0.19 deleterious_low_confidence(0.01) probably_damaging(0.993) TCGA-CG-5733-01 7 146997372 146997373 - T CNTNAP2 Frame_Shift_Ins p.G499Wfs*9 0.21 TCGA-CG-5733-01 7 148484193 148484193 G A CUL1 Missense_Mutation p.S487N 0.19 tolerated(0.08) benign(0.183) TCGA-CG-5733-01 7 148767724 148767724 G A ZNF786 Missense_Mutation p.R714W 0.22 deleterious(0) probably_damaging(1) TCGA-CG-5733-01 7 149171807 149171807 C T ZNF746 Missense_Mutation p.E536K 0.27 deleterious(0) probably_damaging(0.956) TCGA-CG-5733-01 7 150174379 150174379 C T GIMAP8 Silent p.V503V 0.26 TCGA-CG-5733-01 7 150915664 150915664 T C ABCF2 Missense_Mutation p.K404E 0.16 tolerated(0.15) benign(0.005) TCGA-CG-5733-01 7 1539187 1539187 C T INTS1 Missense_Mutation p.A256T 0.46 deleterious(0) possibly_damaging(0.864) TCGA-CG-5733-01 7 154684199 154684199 C T DPP6 3'UTR 0.34 TCGA-CG-5733-01 7 1594983 1594983 G - TMEM184A Frame_Shift_Del p.W47Gfs*90 0.19 TCGA-CG-5733-01 7 21939668 21939669 - A DNAH11 Frame_Shift_Ins p.T4421Nfs*34 0.49 TCGA-CG-5733-01 7 22197474 22197474 T - RAPGEF5 Frame_Shift_Del p.K366Rfs*22 0.21 TCGA-CG-5733-01 7 23286460 23286460 G A GPNMB 5'UTR 0.43 TCGA-CG-5733-01 7 27185513 27185513 G A HOXA6 Missense_Mutation p.R156C 0.42 deleterious(0) possibly_damaging(0.684) TCGA-CG-5733-01 7 30363339 30363339 G A ZNRF2 Missense_Mutation p.R184Q 0.24 deleterious(0) benign(0.194) TCGA-CG-5733-01 7 36763673 36763673 G A AOAH Silent p.N27N 0.30 TCGA-CG-5733-01 7 37896881 37896881 A G NME8 Silent p.E68E 0.31 TCGA-CG-5733-01 7 38398598 38398598 C T TRGV3 5'UTR 0.60 TCGA-CG-5733-01 7 42949153 42949153 T - C7orf25 3'UTR 0.35 TCGA-CG-5733-01 7 43484813 43484813 C T HECW1 Missense_Mutation p.S681L 0.44 deleterious_low_confidence(0.04) benign(0.241) TCGA-CG-5733-01 7 47408471 47408471 C A TNS3 Missense_Mutation p.R591L 0.19 deleterious(0.02) possibly_damaging(0.666) TCGA-CG-5733-01 7 48318519 48318519 A - ABCA13 Frame_Shift_Del p.I2579* 0.39 TCGA-CG-5733-01 7 49842417 49842417 C T VWC2 Silent p.C269C 0.46 TCGA-CG-5733-01 7 5545127 5545127 G A FBXL18 Silent p.N51N 0.07 TCGA-CG-5733-01 7 55755475 55755475 C T RNU6-389P 3'Flank 0.52 TCGA-CG-5733-01 7 63726809 63726809 A C ZNF679 Missense_Mutation p.K266N 0.27 deleterious(0.01) possibly_damaging(0.876) TCGA-CG-5733-01 7 6442041 6442041 C T RAC1 Silent p.P200P 0.15 TCGA-CG-5733-01 7 70597984 70597984 C T WBSCR17 Missense_Mutation p.R66C 0.30 deleterious_low_confidence(0) possibly_damaging(0.551) TCGA-CG-5733-01 7 72412620 72412620 G A POM121 Silent p.P431P 0.14 TCGA-CG-5733-01 7 72419905 72419905 G A POM121 3'UTR 0.17 TCGA-CG-5733-01 7 72756821 72756821 A G FKBP6 Missense_Mutation p.Y303C 0.42 tolerated(0.06) probably_damaging(0.971) TCGA-CG-5733-01 7 73770775 73770775 C T CLIP2 Missense_Mutation p.A280V 0.15 deleterious(0) benign(0.312) TCGA-CG-5733-01 7 75044876 75044877 - T POM121C 3'Flank 0.25 TCGA-CG-5733-01 7 87178807 87178808 CT - ABCB1 Frame_Shift_Del p.A529Pfs*27 0.20 TCGA-CG-5733-01 7 87183124 87183124 T C ABCB1 Missense_Mutation p.T318A 0.20 deleterious(0.05) benign(0.009) TCGA-CG-5733-01 7 87507389 87507389 A - DBF4 Frame_Shift_Del p.N25Tfs*5 0.35 TCGA-CG-5733-01 7 87737537 87737537 A G ADAM22 Missense_Mutation p.D146G 0.22 tolerated(1) benign(0) TCGA-CG-5733-01 7 91726097 91726097 A - AKAP9 Frame_Shift_Del p.I3277* 0.17 TCGA-CG-5733-01 7 927116 927116 C - GET4 Frame_Shift_Del p.R144Gfs*63 0.22 TCGA-CG-5733-01 7 94055071 94055071 G A COL1A2 Missense_Mutation p.G949S 0.25 unknown(0) TCGA-CG-5733-01 7 94185017 94185017 T - CASD1 Frame_Shift_Del p.C783Vfs*21 0.20 TCGA-CG-5733-01 7 94293701 94293701 G A PEG10 Missense_Mutation p.R278H 0.40 deleterious(0.04) benign(0.01) TCGA-CG-5733-01 7 95614280 95614280 A - DYNC1I1 Frame_Shift_Del p.D264Mfs*39 0.34 TCGA-CG-5733-01 7 99695360 99695360 A C MCM7 Missense_Mutation p.F332V 0.19 tolerated(0.91) benign(0.248) TCGA-CG-5733-01 8 10102690 10102692 AGG - MSRA In_Frame_Del p.G98del 0.22 TCGA-CG-5733-01 8 101054050 101054050 C T RGS22 Missense_Mutation p.A640T 0.19 tolerated(1) benign(0) TCGA-CG-5733-01 8 101092489 101092490 - T RGS22 Frame_Shift_Ins p.I71Nfs*13 0.21 TCGA-CG-5733-01 8 101206483 101206483 C A SPAG1 Silent p.G361G 0.28 TCGA-CG-5733-01 8 101585974 101585974 A - SNX31 3'UTR 0.29 TCGA-CG-5733-01 8 10177409 10177409 C T MSRA Silent p.N151N 0.23 TCGA-CG-5733-01 8 101961019 101961019 T C YWHAZ Silent p.G33G 0.25 TCGA-CG-5733-01 8 102589666 102589666 A - GRHL2 Frame_Shift_Del p.N309Tfs*53 0.23 TCGA-CG-5733-01 8 103297902 103297902 T G UBR5 Missense_Mutation p.S1775R 0.23 tolerated(0.36) probably_damaging(0.974) TCGA-CG-5733-01 8 10464633 10464633 G A RP1L1 Silent p.S2325S 0.22 TCGA-CG-5733-01 8 105235897 105235897 G - RIMS2 Intron 0.17 TCGA-CG-5733-01 8 105263283 105263283 C T RIMS2 Silent p.N1241N 0.17 TCGA-CG-5733-01 8 110587156 110587156 G A SYBU Silent p.T657T 0.24 TCGA-CG-5733-01 8 116426160 116426160 T - TRPS1 3'UTR 0.14 TCGA-CG-5733-01 8 118543004 118543004 G A MED30 Missense_Mutation p.D127N 0.05 tolerated(0.11) benign(0.057) TCGA-CG-5733-01 8 119122904 119122904 C T EXT1 Missense_Mutation p.A128T 0.20 deleterious(0.02) benign(0.129) TCGA-CG-5733-01 8 120581581 120581581 C A ENPP2 Silent p.L701L 0.21 TCGA-CG-5733-01 8 124798813 124798813 G A FAM91A1 Silent p.S347S 0.23 TCGA-CG-5733-01 8 125565503 125565503 G A MTSS1 Silent p.S666S 0.25 TCGA-CG-5733-01 8 131130877 131130877 C A ASAP1 Missense_Mutation p.R551M 0.04 deleterious(0) possibly_damaging(0.598) TCGA-CG-5733-01 8 133883670 133883670 C T TG Missense_Mutation p.P118S 0.04 deleterious(0.01) probably_damaging(0.996) TCGA-CG-5733-01 8 134125772 134125772 C T TG Missense_Mutation p.A2560V 0.28 deleterious(0.03) possibly_damaging(0.578) TCGA-CG-5733-01 8 134292508 134292508 G T NDRG1 Silent p.T22T 0.21 TCGA-CG-5733-01 8 142228524 142228524 G T SLC45A4 Silent p.P354P 0.10 TCGA-CG-5733-01 8 142500310 142500310 G A MROH5 3'Flank 0.35 TCGA-CG-5733-01 8 144810216 144810216 A G FAM83H Missense_Mutation p.L472P 0.45 deleterious(0.02) benign(0.038) TCGA-CG-5733-01 8 144944068 144944068 A G EPPK1 Silent p.S1118S 0.23 TCGA-CG-5733-01 8 145059434 145059434 G - PARP10 Frame_Shift_Del p.H246Tfs*33 0.30 TCGA-CG-5733-01 8 145059498 145059498 T A PARP10 Splice_Site p.X225_splice 0.20 TCGA-CG-5733-01 8 145060298 145060298 G A PARP10 Missense_Mutation p.R36C 0.28 deleterious(0) probably_damaging(0.93) TCGA-CG-5733-01 8 145617902 145617902 A G ADCK5 Missense_Mutation p.M504V 0.20 deleterious(0) possibly_damaging(0.529) TCGA-CG-5733-01 8 145619218 145619218 G A CPSF1 Missense_Mutation p.R1299W 0.22 deleterious(0.04) probably_damaging(0.998) TCGA-CG-5733-01 8 145736269 145736269 G C MFSD3 Missense_Mutation p.A350P 0.14 deleterious(0) probably_damaging(0.969) TCGA-CG-5733-01 8 1626650 1626650 C T DLGAP2 Silent p.I773I 0.18 TCGA-CG-5733-01 8 17921978 17921980 CTG - ASAH1 In_Frame_Del p.A164del 0.16 TCGA-CG-5733-01 8 17927303 17927303 A T ASAH1 Missense_Mutation p.L117M 0.18 tolerated(0.13) benign(0.107) TCGA-CG-5733-01 8 20112440 20112440 G A LZTS1 Silent p.L85L 0.23 TCGA-CG-5733-01 8 21956068 21956068 C T FAM160B2 Silent p.Y301Y 0.09 TCGA-CG-5733-01 8 22058651 22058651 C - BMP1 Intron 0.23 TCGA-CG-5733-01 8 22472975 22472975 C - CCAR2 Frame_Shift_Del p.R417Gfs*89 0.26 TCGA-CG-5733-01 8 22473623 22473623 C T CCAR2 Silent p.S569S 0.24 TCGA-CG-5733-01 8 22487477 22487477 T - BIN3 Frame_Shift_Del p.K113Sfs*13 0.36 TCGA-CG-5733-01 8 22548028 22548028 C T EGR3 Silent p.A374A 0.14 TCGA-CG-5733-01 8 22862901 22862901 G A RHOBTB2 Missense_Mutation p.R92Q 0.22 tolerated(0.35) probably_damaging(0.974) TCGA-CG-5733-01 8 23709800 23709800 G A STC1 Silent p.D72D 0.16 TCGA-CG-5733-01 8 25257429 25257429 T - DOCK5 Frame_Shift_Del p.F1571Lfs*19 0.26 TCGA-CG-5733-01 8 25290078 25290078 T - KCTD9 Frame_Shift_Del p.N332Mfs*4 0.19 TCGA-CG-5733-01 8 27145136 27145136 G A TRIM35 Silent p.G471G 0.26 TCGA-CG-5733-01 8 27145457 27145457 C - TRIM35 Frame_Shift_Del p.L365Cfs*47 0.30 TCGA-CG-5733-01 8 28420583 28420583 T G FZD3 3'UTR 0.25 TCGA-CG-5733-01 8 2855694 2855694 C T CSMD1 Missense_Mutation p.G2739D 0.21 probably_damaging(1) TCGA-CG-5733-01 8 30982073 30982073 G A WRN Missense_Mutation p.R889Q 0.24 deleterious(0.04) benign(0.271) TCGA-CG-5733-01 8 37611432 37611432 G A ERLIN2 Splice_Site p.X274_splice 0.24 TCGA-CG-5733-01 8 41467268 41467268 C T AGPAT6 Silent p.F110F 0.23 TCGA-CG-5733-01 8 41798418 41798418 G A KAT6A Missense_Mutation p.P994L 0.25 possibly_damaging(0.86) TCGA-CG-5733-01 8 48701555 48701555 T - PRKDC Frame_Shift_Del p.N3604Tfs*48 0.28 TCGA-CG-5733-01 8 52322009 52322009 C T PXDNL Silent p.A725A 0.29 TCGA-CG-5733-01 8 53038681 53038681 T C ST18 Missense_Mutation p.N896D 0.26 tolerated(0.13) probably_damaging(0.979) TCGA-CG-5733-01 8 54906257 54906257 C A TCEA1 Silent p.S97S 0.04 TCGA-CG-5733-01 8 55534132 55534132 C T RP1 Silent p.D202D 0.17 TCGA-CG-5733-01 8 55538400 55538400 G A RP1 Missense_Mutation p.G653D 0.22 tolerated(0.13) benign(0.05) TCGA-CG-5733-01 8 59498296 59498296 G A NSMAF Silent p.S889S 0.18 TCGA-CG-5733-01 8 623803 623803 A G ERICH1 Silent p.A183A 0.20 TCGA-CG-5733-01 8 6338339 6338339 G A MCPH1 Missense_Mutation p.R693H 0.28 deleterious(0) probably_damaging(0.996) TCGA-CG-5733-01 8 69380980 69380980 C T C8orf34 Missense_Mutation p.R221C 0.18 deleterious(0.04) benign(0.067) TCGA-CG-5733-01 8 72935106 72935106 C T TRPA1 3'UTR 0.48 TCGA-CG-5733-01 8 77765696 77765696 C T ZFHX4 Missense_Mutation p.T2180M 0.21 probably_damaging(0.999) TCGA-CG-5733-01 8 87424099 87424099 T G WWP1 Missense_Mutation p.S353A 0.24 tolerated(0.43) benign(0.007) TCGA-CG-5733-01 8 90937134 90937134 C T OSGIN2 Missense_Mutation p.R342C 0.20 tolerated(0.1) benign(0.002) TCGA-CG-5733-01 8 90937459 90937459 T G OSGIN2 Missense_Mutation p.L450R 0.04 deleterious(0) possibly_damaging(0.5) TCGA-CG-5733-01 8 94745625 94745626 CT - RBM12B 3'UTR 0.20 TCGA-CG-5733-01 8 94794663 94794663 C T TMEM67 Missense_Mutation p.S369L 0.19 tolerated(0.16) benign(0.078) TCGA-CG-5733-01 8 97978250 97978250 G A CPQ Missense_Mutation p.A313T 0.15 deleterious(0.02) probably_damaging(0.939) TCGA-CG-5733-01 9 100088885 100088885 G T CCDC180 Missense_Mutation p.S576I 0.30 deleterious(0) probably_damaging(0.977) TCGA-CG-5733-01 9 100849874 100849874 C T TRIM14 Missense_Mutation p.A403T 0.25 tolerated(0.1) benign(0.037) TCGA-CG-5733-01 9 101216327 101216327 G A GABBR2 Missense_Mutation p.T391M 0.27 tolerated(0.1) possibly_damaging(0.867) TCGA-CG-5733-01 9 111617761 111617761 G A ACTL7B Silent p.S150S 0.21 TCGA-CG-5733-01 9 113704261 113704261 C T LPAR1 Missense_Mutation p.R78H 0.30 deleterious(0.03) possibly_damaging(0.564) TCGA-CG-5733-01 9 115421658 115421658 G A KIAA1958 Missense_Mutation p.R487H 0.38 deleterious(0) benign(0.175) TCGA-CG-5733-01 9 115941002 115941002 T - FKBP15 Frame_Shift_Del p.K665Rfs*9 0.27 TCGA-CG-5733-01 9 116812557 116812557 A G ZNF618 3'UTR 0.29 TCGA-CG-5733-01 9 121929368 121929368 G T BRINP1 Silent p.L760L 0.03 TCGA-CG-5733-01 9 123620372 123620372 G T PHF19 Silent p.S531S 0.15 TCGA-CG-5733-01 9 123943560 123943561 - T RAB14 3'UTR 0.31 TCGA-CG-5733-01 9 124081159 124081159 G A GSN Splice_Site p.X448_splice 0.30 TCGA-CG-5733-01 9 125861042 125861042 A - RABGAP1 Frame_Shift_Del p.N930Tfs*15 0.27 TCGA-CG-5733-01 9 126132397 126132397 T C CRB2 Silent p.C355C 0.25 TCGA-CG-5733-01 9 130416038 130416038 C T STXBP1 Silent p.C44C 0.29 TCGA-CG-5733-01 9 131050962 131050962 G A SWI5 Silent p.L225L 0.30 TCGA-CG-5733-01 9 131254775 131254775 T C ODF2 Missense_Mutation p.V536A 0.40 tolerated(0.1) benign(0.007) TCGA-CG-5733-01 9 135470282 135470282 G A DDX31 Missense_Mutation p.R843W 0.32 deleterious_low_confidence(0) benign(0) TCGA-CG-5733-01 9 135975816 135975816 G A RALGDS Intron 0.36 TCGA-CG-5733-01 9 136234223 136234223 G A SURF4 Silent p.S49S 0.28 TCGA-CG-5733-01 9 137806229 137806229 A G FCN1 Splice_Site p.X103_splice 0.26 TCGA-CG-5733-01 9 137809680 137809680 G T FCN1 Missense_Mutation p.A13D 0.29 tolerated(0.42) benign(0.056) TCGA-CG-5733-01 9 137990338 137990338 C T OLFM1 Silent p.C203C 0.29 TCGA-CG-5733-01 9 139229058 139229058 G A GPSM1 Missense_Mutation p.A75T 0.20 deleterious(0.03) probably_damaging(0.975) TCGA-CG-5733-01 9 139748339 139748339 C T MAMDC4 Missense_Mutation p.R189C 0.35 deleterious(0) probably_damaging(0.999) TCGA-CG-5733-01 9 140058231 140058231 G - GRIN1 Frame_Shift_Del p.G844Afs*8 0.29 TCGA-CG-5733-01 9 140328791 140328791 C A NOXA1 Silent p.S477S 0.04 TCGA-CG-5733-01 9 140330594 140330594 A G ENTPD8 Silent p.V307V 0.26 TCGA-CG-5733-01 9 140729301 140729301 C T EHMT1 Missense_Mutation p.H1265Y 0.38 tolerated(0.6) benign(0.011) TCGA-CG-5733-01 9 18706941 18706941 A G ADAMTSL1 Missense_Mutation p.N591D 0.25 tolerated(0.56) benign(0) TCGA-CG-5733-01 9 2192784 2192784 C T SMARCA2 3'UTR 0.33 TCGA-CG-5733-01 9 26842535 26842535 C T CAAP1 Missense_Mutation p.V284I 0.06 tolerated(0.05) possibly_damaging(0.487) TCGA-CG-5733-01 9 26919401 26919401 T C PLAA Missense_Mutation p.M442V 0.26 tolerated(0.16) benign(0.065) TCGA-CG-5733-01 9 32418455 32418455 G A ACO1 Missense_Mutation p.V202M 0.04 deleterious(0) probably_damaging(0.971) TCGA-CG-5733-01 9 32450190 32450190 C G ACO1 3'UTR 0.67 TCGA-CG-5733-01 9 33386192 33386192 C T AQP7 Silent p.T136T 0.14 TCGA-CG-5733-01 9 33466943 33466944 - C NOL6 Frame_Shift_Ins p.L641Pfs*16 0.25 TCGA-CG-5733-01 9 34271901 34271901 T C KIF24 Missense_Mutation p.S415G 0.33 deleterious(0) probably_damaging(0.911) TCGA-CG-5733-01 9 34339041 34339041 G A NUDT2 Missense_Mutation p.A2T 0.32 tolerated(0.16) benign(0.296) TCGA-CG-5733-01 9 35091522 35091523 - G PIGO Frame_Shift_Ins p.T788Hfs*5 0.26 TCGA-CG-5733-01 9 35101481 35101481 C T STOML2 Missense_Mutation p.R174H 0.28 deleterious(0) probably_damaging(0.975) TCGA-CG-5733-01 9 35609590 35609590 T G TESK1 Missense_Mutation p.F578V 0.21 deleterious(0) probably_damaging(0.981) TCGA-CG-5733-01 9 35810888 35810888 G A SPAG8 Missense_Mutation p.P344L 0.25 deleterious(0.03) probably_damaging(0.988) TCGA-CG-5733-01 9 36209304 36209304 G A CLTA Missense_Mutation p.V176M 0.31 deleterious(0.04) benign(0.037) TCGA-CG-5733-01 9 38396879 38396879 G T ALDH1B1 Missense_Mutation p.Q378H 0.23 deleterious(0) possibly_damaging(0.66) TCGA-CG-5733-01 9 428479 428479 C T DOCK8 Missense_Mutation p.R1486C 0.24 deleterious(0) probably_damaging(0.999) TCGA-CG-5733-01 9 676999 676999 C T KANK1 Silent p.G9G 0.26 TCGA-CG-5733-01 9 70993145 70993145 A G PGM5 Missense_Mutation p.I98V 0.25 deleterious(0.01) possibly_damaging(0.573) TCGA-CG-5733-01 9 712829 712829 C T KANK1 Missense_Mutation p.T688M 0.32 tolerated(0.26) benign(0.018) TCGA-CG-5733-01 9 72003185 72003185 G A FAM189A2 Missense_Mutation p.R323Q 0.25 tolerated(1) benign(0.01) TCGA-CG-5733-01 9 72727953 72727953 G A MAMDC2 Missense_Mutation p.R183H 0.36 tolerated(0.33) benign(0.007) TCGA-CG-5733-01 9 73152286 73152286 T C TRPM3 Missense_Mutation p.N1236S 0.27 tolerated(0.06) probably_damaging(0.994) TCGA-CG-5733-01 9 73213485 73213485 G A TRPM3 Silent p.V954V 0.29 TCGA-CG-5733-01 9 74817634 74817636 AGA - GDA In_Frame_Del p.E122del 0.29 TCGA-CG-5733-01 9 75263574 75263574 A - TMC1 Frame_Shift_Del p.V6Yfs*33 0.28 TCGA-CG-5733-01 9 78773924 78773924 C T PCSK5 Missense_Mutation p.R486C 0.24 deleterious(0) probably_damaging(0.97) TCGA-CG-5733-01 9 80336221 80336221 G A GNAQ 3'UTR 0.34 TCGA-CG-5733-01 9 84198990 84198990 G A TLE1 3'UTR 0.39 TCGA-CG-5733-01 9 89763701 89763701 G T C9orf170 Missense_Mutation p.G19V 0.14 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-CG-5733-01 9 94486805 94486805 G A ROR2 Silent p.R657R 0.24 TCGA-CG-5733-01 9 94984874 94984874 A G IARS Missense_Mutation p.Y1212H 0.29 tolerated_low_confidence(1) benign(0) TCGA-CG-5733-01 9 95076606 95076606 C T NOL8 Silent p.A767A 0.35 TCGA-CG-5733-01 9 95480885 95480885 G A BICD2 Missense_Mutation p.S681L 0.31 deleterious(0) probably_damaging(0.988) TCGA-CG-5733-01 9 95610073 95610073 G A ZNF484 Silent p.D334D 0.09 TCGA-CG-5733-01 9 96080443 96080443 A - WNK2 3'UTR 0.17 TCGA-CG-5733-01 9 96278468 96278468 C T FAM120A Silent p.P445P 0.28 TCGA-CG-5733-01 9 96859910 96859910 G A PTPDC1 Silent p.A352A 0.37 TCGA-CG-5733-01 9 97380085 97380086 - A FBP1 Frame_Shift_Ins p.V131Cfs*11 0.24 TCGA-CG-5733-01 9 98678714 98678714 C T ERCC6L2 Missense_Mutation p.R397W 0.29 deleterious(0) probably_damaging(0.999) TCGA-CG-5733-01 X 100505520 100505520 C T DRP2 Missense_Mutation p.A550V 0.14 deleterious(0) probably_damaging(0.943) TCGA-CG-5733-01 X 100536709 100536709 T - TAF7L Frame_Shift_Del p.K240Rfs*26 0.31 TCGA-CG-5733-01 X 100912688 100912688 G T ARMCX2 5'UTR 0.68 TCGA-CG-5733-01 X 101912901 101912901 G A GPRASP1 Missense_Mutation p.V1354M 0.38 tolerated(0.86) benign(0.016) TCGA-CG-5733-01 X 105937331 105937332 TG - RNF128 Frame_Shift_Del p.V7Dfs*5 0.34 TCGA-CG-5733-01 X 106046064 106046065 - G TBC1D8B 5'UTR 0.35 TCGA-CG-5733-01 X 107978396 107978396 C T IRS4 Missense_Mutation p.M393I 0.40 tolerated(0.06) benign(0.029) TCGA-CG-5733-01 X 131212732 131212733 - A FRMD7 Frame_Shift_Ins p.S438Ffs*14 0.36 TCGA-CG-5733-01 X 135630855 135630855 G A VGLL1 Missense_Mutation p.G108S 0.41 tolerated(0.13) benign(0.245) TCGA-CG-5733-01 X 138856898 138856898 G A ATP11C Missense_Mutation p.R726C 0.35 tolerated(0.06) possibly_damaging(0.901) TCGA-CG-5733-01 X 149013706 149013706 G A MAGEA8 Silent p.P220P 0.36 TCGA-CG-5733-01 X 152482678 152482678 A C MAGEA1 Silent p.G111G 0.39 TCGA-CG-5733-01 X 153069625 153069625 C T PDZD4 Missense_Mutation p.G498D 0.55 tolerated(0.51) benign(0.119) TCGA-CG-5733-01 X 153944504 153944504 C T GAB3 Missense_Mutation p.R58Q 0.40 deleterious(0) probably_damaging(0.999) TCGA-CG-5733-01 X 1585333 1585333 C T P2RY8 Missense_Mutation p.G40D 0.31 deleterious(0.03) probably_damaging(0.966) TCGA-CG-5733-01 X 21675213 21675213 C T KLHL34 Missense_Mutation p.V232I 0.35 tolerated(0.7) benign(0.005) TCGA-CG-5733-01 X 3241263 3241263 A - MXRA5 Frame_Shift_Del p.P822Lfs*14 0.54 TCGA-CG-5733-01 X 33229458 33229458 A - DMD 5'UTR 0.43 TCGA-CG-5733-01 X 34648479 34648479 C - TMEM47 Frame_Shift_Del p.G166Vfs*7 0.30 TCGA-CG-5733-01 X 37026509 37026509 G A FAM47C Missense_Mutation p.R9Q 0.27 tolerated(0.26) benign(0.2) TCGA-CG-5733-01 X 37027955 37027955 C A FAM47C Missense_Mutation p.P491H 0.45 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-CG-5733-01 X 37663304 37663304 G A CYBB Missense_Mutation p.V358I 0.55 deleterious(0.05) probably_damaging(0.952) TCGA-CG-5733-01 X 38019423 38019423 G T SRPX Missense_Mutation p.P268T 0.32 deleterious(0) probably_damaging(1) TCGA-CG-5733-01 X 40588560 40588608 TCCATACTCACCTTTCCACATCAGATTTCCTTGGCAGTCTAAGAAGAAA CCATACTCACCTTTCCACATCAGATTTCCTTGGCAGTCTAAGAAG MED14 Splice_Site p.X72_splice 0.12 TCGA-CG-5733-01 X 65392355 65392355 A G HEPH Missense_Mutation p.D163G 0.43 deleterious(0) probably_damaging(1) TCGA-CG-5733-01 X 66765796 66765796 G A AR Missense_Mutation p.A270T 0.35 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CG-5733-01 X 70321277 70321277 G - FOXO4 Frame_Shift_Del p.L402Ffs*18 0.41 TCGA-CG-5733-01 X 83126520 83126520 C T CYLC1 Missense_Mutation p.P40L 0.39 deleterious(0.01) possibly_damaging(0.87) TCGA-CG-5734-01 10 106907471 106907471 C T SORCS3 Missense_Mutation p.R467C 0.04 deleterious(0) possibly_damaging(0.856) TCGA-CG-5734-01 10 108458997 108458997 C T SORCS1 Missense_Mutation p.G463D 0.06 tolerated(0.14) benign(0.149) TCGA-CG-5734-01 10 49420007 49420007 T G FRMPD2 Missense_Mutation p.K534T 0.13 deleterious(0.01) benign(0.009) TCGA-CG-5734-01 10 87482893 87482893 C T GRID1 Missense_Mutation p.E622K 0.11 deleterious(0.01) benign(0.36) TCGA-CG-5734-01 11 114320834 114320834 G A REXO2 3'UTR 0.12 TCGA-CG-5734-01 11 116718205 116718205 A T SIK3 Missense_Mutation p.D1207E 0.10 tolerated_low_confidence(0.13) benign(0.002) TCGA-CG-5734-01 11 123624910 123624910 C T OR6X1 Missense_Mutation p.G106D 0.07 deleterious(0.01) benign(0.395) TCGA-CG-5734-01 11 130278390 130278390 T C ADAMTS8 Missense_Mutation p.R690G 0.12 deleterious(0) probably_damaging(0.948) TCGA-CG-5734-01 11 47837151 47837151 A G NUP160 Silent p.N522N 0.03 TCGA-CG-5734-01 11 60285672 60285672 T A MS4A13 Nonsense_Mutation p.L39* 0.07 TCGA-CG-5734-01 11 99827732 99827732 C T CNTN5 Missense_Mutation p.R290C 0.16 deleterious(0) possibly_damaging(0.837) TCGA-CG-5734-01 12 101551045 101551045 A G SLC5A8 3'UTR 0.08 TCGA-CG-5734-01 12 132497672 132497672 G A EP400 Missense_Mutation p.R1187H 0.12 unknown(0) TCGA-CG-5734-01 12 48359740 48359740 C A TMEM106C Missense_Mutation p.T124K 0.16 tolerated(0.44) possibly_damaging(0.588) TCGA-CG-5734-01 12 4920073 4920073 C T KCNA6 Missense_Mutation p.P289L 0.14 tolerated(0.84) possibly_damaging(0.889) TCGA-CG-5734-01 12 66935616 66935616 C T GRIP1 Missense_Mutation p.R84Q 0.04 deleterious(0) possibly_damaging(0.653) TCGA-CG-5734-01 13 103446097 103446097 C T KDELC1 Missense_Mutation p.E150K 0.09 tolerated(0.86) benign(0.079) TCGA-CG-5734-01 13 24190168 24190168 G A TNFRSF19 Missense_Mutation p.G115R 0.13 deleterious(0.03) probably_damaging(1) TCGA-CG-5734-01 13 95859004 95859004 A T ABCC4 Missense_Mutation p.C315S 0.06 deleterious(0) benign(0) TCGA-CG-5734-01 14 101531948 101531948 G A MIR369 RNA 0.03 TCGA-CG-5734-01 14 20529107 20529107 C T OR4L1 Missense_Mutation p.R302W 0.08 tolerated(0.24) benign(0.002) TCGA-CG-5734-01 15 42143986 42143986 G A SPTBN5 Silent p.G3549G 0.07 TCGA-CG-5734-01 15 58920052 58920052 C T ADAM10 Missense_Mutation p.E403K 0.08 tolerated(0.06) benign(0.444) TCGA-CG-5734-01 16 14970589 14970589 C T NOMO1 Missense_Mutation p.A862V 0.07 tolerated(0.22) benign(0.167) TCGA-CG-5734-01 16 30750658 30750658 C T SRCAP Silent p.S3099S 0.08 TCGA-CG-5734-01 16 31213016 31213016 G A PYCARD Missense_Mutation p.R160W 0.11 deleterious(0) probably_damaging(0.983) TCGA-CG-5734-01 16 3639390 3639390 T C SLX4 Missense_Mutation p.S1417G 0.07 tolerated(0.77) benign(0.01) TCGA-CG-5734-01 16 66759770 66759770 G A DYNC1LI2 Missense_Mutation p.P447S 0.07 tolerated(0.17) benign(0.209) TCGA-CG-5734-01 16 67237416 67237416 C A ELMO3 Missense_Mutation p.A680D 0.05 deleterious(0) probably_damaging(0.994) TCGA-CG-5734-01 16 7383011 7383011 G A RBFOX1 Silent p.A3A 0.07 TCGA-CG-5734-01 17 45822578 45822578 C T TBX21 Missense_Mutation p.P485L 0.15 tolerated(0.29) benign(0.267) TCGA-CG-5734-01 17 48155636 48155636 C T ITGA3 Missense_Mutation p.T762I 0.05 tolerated(0.28) benign(0.009) TCGA-CG-5734-01 17 61987336 61987336 C T CSHL1 Intron 0.09 TCGA-CG-5734-01 17 7579855 7579855 A - TP53 Frame_Shift_Del p.S20Qfs*24 0.12 TCGA-CG-5734-01 17 8390909 8390909 G A MYH10 Missense_Mutation p.R1630W 0.13 probably_damaging(0.998) TCGA-CG-5734-01 17 8508154 8508154 G A MYH10 Silent p.C164C 0.03 TCGA-CG-5734-01 18 77246937 77246937 G A NFATC1 Missense_Mutation p.V915I 0.10 deleterious(0.01) benign(0.115) TCGA-CG-5734-01 19 11832637 11832637 C T ZNF823 Missense_Mutation p.R571Q 0.10 tolerated(0.59) benign(0.03) TCGA-CG-5734-01 19 51021776 51021776 C T LRRC4B Silent p.T398T 0.12 TCGA-CG-5734-01 19 8028580 8028580 G A ELAVL1 Silent p.D256D 0.06 TCGA-CG-5734-01 19 9047614 9047614 C A MUC16 Missense_Mutation p.E11339D 0.12 benign(0.003) TCGA-CG-5734-01 1 120437529 120437529 G T ADAM30 Nonsense_Mutation p.C477* 0.09 TCGA-CG-5734-01 1 13001329 13001329 T G PRAMEF6 Missense_Mutation p.E118D 0.03 deleterious(0.03) possibly_damaging(0.547) TCGA-CG-5734-01 1 147381081 147381081 C T GJA8 Silent p.G333G 0.38 TCGA-CG-5734-01 1 152285654 152285654 G T FLG Missense_Mutation p.Q570K 0.20 benign(0.118) TCGA-CG-5734-01 1 167487722 167487722 A T CD247 5'UTR 0.15 TCGA-CG-5734-01 1 170967420 170967420 G T MROH9 Intron 0.06 TCGA-CG-5734-01 1 176526217 176526217 C A PAPPA2 Silent p.T253T 0.12 TCGA-CG-5734-01 1 192127860 192127860 A C RGS18 Missense_Mutation p.E31D 0.03 tolerated(0.09) possibly_damaging(0.888) TCGA-CG-5734-01 1 203055095 203055095 C T MYOG 5'UTR 0.10 TCGA-CG-5734-01 1 21076258 21076258 A G HP1BP3 Missense_Mutation p.Y367H 0.11 tolerated(0.08) possibly_damaging(0.899) TCGA-CG-5734-01 1 2290081 2290081 G C MORN1 Missense_Mutation p.N273K 0.19 deleterious(0) benign(0.01) TCGA-CG-5734-01 1 240286542 240286542 A C FMN2 Missense_Mutation p.K560T 0.04 unknown(0) TCGA-CG-5734-01 1 48764299 48764299 A T SPATA6 3'UTR 0.08 TCGA-CG-5734-01 1 9770626 9770626 G A PIK3CD Missense_Mutation p.R38H 0.11 tolerated(0.18) benign(0.009) TCGA-CG-5734-01 20 1592289 1592289 C A SIRPB1 Intron 0.13 TCGA-CG-5734-01 20 23545570 23545570 G A CST9L 3'UTR 0.13 TCGA-CG-5734-01 20 30753261 30753261 C T TM9SF4 3'UTR 0.08 TCGA-CG-5734-01 21 31015233 31015233 C T GRIK1 Silent p.R337R 0.10 TCGA-CG-5734-01 22 20819530 20819530 T C KLHL22 Missense_Mutation p.T243A 0.07 tolerated(0.86) benign(0.005) TCGA-CG-5734-01 22 24621533 24621533 G A GGT5 Silent p.S439S 0.09 TCGA-CG-5734-01 22 36054692 36054692 C T APOL6 Silent p.D27D 0.06 TCGA-CG-5734-01 2 132508372 132508372 T G C2orf27A 5'UTR 0.11 TCGA-CG-5734-01 2 166806309 166806309 C T TTC21B Intron 0.08 TCGA-CG-5734-01 2 203378463 203378463 G A BMPR2 Missense_Mutation p.R147Q 0.03 tolerated(0.25) benign(0.022) TCGA-CG-5734-01 2 219128380 219128380 C T GPBAR1 Silent p.P311P 0.11 TCGA-CG-5734-01 2 219508125 219508125 G C ZNF142 Silent p.L1038L 0.07 TCGA-CG-5734-01 2 46203682 46203682 A G PRKCE Missense_Mutation p.Y176C 0.09 deleterious(0) possibly_damaging(0.852) TCGA-CG-5734-01 3 100058731 100058731 C T NIT2 Nonsense_Mutation p.Q67* 0.08 TCGA-CG-5734-01 3 121350700 121350700 A G HCLS1 Missense_Mutation p.L485P 0.09 deleterious(0) possibly_damaging(0.766) TCGA-CG-5734-01 3 3085346 3085346 A C CNTN4 Missense_Mutation p.Q923H 0.08 tolerated(0.51) benign(0.009) TCGA-CG-5734-01 3 44879787 44879787 C T KIF15 Silent p.D1064D 0.08 TCGA-CG-5734-01 3 9832967 9832967 G C TADA3 Missense_Mutation p.R62G 0.11 deleterious(0.01) probably_damaging(0.956) TCGA-CG-5734-01 4 20533667 20533667 T C SLIT2 Silent p.P558P 0.13 TCGA-CG-5734-01 4 73957913 73957913 C T ANKRD17 Missense_Mutation p.S1811N 0.05 benign(0.012) TCGA-CG-5734-01 5 131398068 131398068 G A IL3 Missense_Mutation p.A90T 0.03 tolerated(0.56) benign(0.001) TCGA-CG-5734-01 5 140181583 140181583 C T PCDHA3 Silent p.T267T 0.08 TCGA-CG-5734-01 5 140188293 140188293 C T PCDHA4 Silent p.Y507Y 0.16 TCGA-CG-5734-01 5 140531925 140531925 C T PCDHB6 Missense_Mutation p.S696L 0.09 deleterious(0.02) probably_damaging(0.944) TCGA-CG-5734-01 5 141243883 141243883 C T PCDH1 Silent p.L671L 0.19 TCGA-CG-5734-01 5 141244796 141244796 T - PCDH1 Frame_Shift_Del p.K367Rfs*9 0.19 TCGA-CG-5734-01 5 154397183 154397183 C T KIF4B 3'UTR 0.18 TCGA-CG-5734-01 5 159776736 159776736 G A C1QTNF2 Silent p.A144A 0.10 TCGA-CG-5734-01 5 176304597 176304597 G A UNC5A Missense_Mutation p.V510I 0.20 tolerated(0.17) probably_damaging(0.997) TCGA-CG-5734-01 5 70763277 70763277 T A BDP1 Missense_Mutation p.F294L 0.13 deleterious(0) probably_damaging(0.997) TCGA-CG-5734-01 6 20124775 20124775 C T MBOAT1 Silent p.T257T 0.04 TCGA-CG-5734-01 6 29342887 29342887 A C OR12D3 Missense_Mutation p.F60V 0.08 deleterious(0) probably_damaging(0.959) TCGA-CG-5734-01 6 31604895 31604895 G A PRRC2A Missense_Mutation p.R2075Q 0.05 unknown(0) TCGA-CG-5734-01 6 39304245 39304245 C T KIF6 3'UTR 0.13 TCGA-CG-5734-01 6 43191861 43191861 C - CUL9 Frame_Shift_Del p.S2438* 0.08 TCGA-CG-5734-01 7 127725833 127725833 G A SND1 Splice_Site p.X768_splice 0.14 TCGA-CG-5734-01 7 16900174 16900174 C T AGR3 Missense_Mutation p.G134E 0.11 deleterious(0) probably_damaging(1) TCGA-CG-5734-01 7 32910203 32910203 C T KBTBD2 Missense_Mutation p.R209Q 0.13 deleterious(0) probably_damaging(1) TCGA-CG-5734-01 7 73753314 73753314 C T CLIP2 Missense_Mutation p.R220C 0.08 deleterious(0) possibly_damaging(0.832) TCGA-CG-5734-01 7 7421221 7421221 A T COL28A1 Missense_Mutation p.F720Y 0.07 tolerated(0.62) benign(0.162) TCGA-CG-5734-01 7 82582923 82582923 A C PCLO Missense_Mutation p.V2449G 0.13 unknown(0) TCGA-CG-5734-01 7 93536131 93536131 G T GNGT1 Nonsense_Mutation p.E25* 0.08 TCGA-CG-5734-01 8 10468213 10468213 A G RP1L1 Missense_Mutation p.L1132P 0.09 benign(0.002) TCGA-CG-5734-01 8 105368424 105368424 T C DCSTAMP Nonstop_Mutation p.*471Rext*18 0.16 TCGA-CG-5734-01 8 113256718 113256718 T C CSMD3 Missense_Mutation p.Y3436C 0.07 deleterious(0) probably_damaging(0.99) TCGA-CG-5734-01 8 121222070 121222070 T C COL14A1 Missense_Mutation p.V466A 0.06 tolerated(1) benign(0.37) TCGA-CG-5734-01 8 36691097 36691097 A C KCNU1 Missense_Mutation p.T378P 0.09 deleterious(0.05) probably_damaging(0.965) TCGA-CG-5734-01 8 42012342 42012342 C T AP3M2 Missense_Mutation p.P46L 0.06 deleterious(0.02) probably_damaging(0.955) TCGA-CG-5734-01 8 69032431 69032431 G T PREX2 Missense_Mutation p.V1169L 0.07 deleterious(0.01) benign(0.001) TCGA-CG-5734-01 9 119380718 119380718 A T ASTN2 Missense_Mutation p.S1029R 0.10 deleterious(0) unknown(0) TCGA-CG-5734-01 9 135205649 135205649 G A SETX Nonsense_Mutation p.Q446* 0.09 TCGA-CG-5734-01 9 20720434 20720434 G A FOCAD Missense_Mutation p.R63Q 0.04 tolerated(0.06) benign(0.293) TCGA-CG-5734-01 9 99086398 99086398 G T SLC35D2 Missense_Mutation p.T269K 0.05 deleterious(0) probably_damaging(0.966) TCGA-CG-5734-01 X 100630297 100630297 T C BTK 5'UTR 0.17 TCGA-CG-5734-01 X 135455081 135455081 G A GPR112 Missense_Mutation p.R2545H 0.03 tolerated(0.23) benign(0.003) TCGA-CG-5734-01 X 13790914 13790914 G A GPM6B 3'UTR 0.14 TCGA-CG-5734-01 X 153760800 153760800 G A G6PD Silent p.T453T 0.13 TCGA-CG-5734-01 X 49854898 49854898 C T CLCN5 Missense_Mutation p.R624W 0.23 deleterious(0) probably_damaging(0.997) TCGA-CG-5734-01 X 77912678 77912678 T A ZCCHC5 Missense_Mutation p.S414C 0.10 deleterious(0.03) benign(0.017) TCGA-CG-5734-01 X 79932138 79932138 C T BRWD3 Silent p.R1793R 0.05 TCGA-D7-5577-01 10 103909733 103909733 T C PPRC1 Missense_Mutation p.S1648P 0.30 deleterious(0) benign(0.307) TCGA-D7-5577-01 10 112764475 112764475 A G SHOC2 Missense_Mutation p.M362V 0.03 tolerated(0.08) benign(0.002) TCGA-D7-5577-01 10 17735260 17735260 A C STAM Missense_Mutation p.K162Q 0.32 deleterious(0.01) benign(0.358) TCGA-D7-5577-01 10 26482178 26482178 C T MYO3A Nonsense_Mutation p.R1495* 0.53 TCGA-D7-5577-01 10 75556659 75556659 C T ZSWIM8 Missense_Mutation p.A1054V 0.23 tolerated_low_confidence(0.19) benign(0.003) TCGA-D7-5577-01 10 89692893 89692893 C A PTEN Missense_Mutation p.A126D 0.50 deleterious(0) probably_damaging(0.988) TCGA-D7-5577-01 11 1279575 1279575 C T MUC5B Missense_Mutation p.S5524L 0.27 unknown(0) TCGA-D7-5577-01 11 1776147 1776147 G A CTSD Silent p.V272V 0.43 TCGA-D7-5577-01 11 45928464 45928464 G T C11orf94 Missense_Mutation p.S44Y 0.18 deleterious(0.01) possibly_damaging(0.837) TCGA-D7-5577-01 11 49597836 49597836 A C RP11-707M1.1 RNA 0.35 TCGA-D7-5577-01 11 57003375 57003375 T A APLNR Missense_Mutation p.K368N 0.28 deleterious_low_confidence(0.01) probably_damaging(0.995) TCGA-D7-5577-01 11 799981 799981 C G PIDD Missense_Mutation p.A770P 0.16 tolerated(0.34) benign(0.001) TCGA-D7-5577-01 12 100887051 100887051 T - NR1H4 5'UTR 0.43 TCGA-D7-5577-01 12 117665383 117665383 C T NOS1 Missense_Mutation p.E1191K 0.28 deleterious(0) probably_damaging(0.977) TCGA-D7-5577-01 12 26818914 26818914 G T ITPR2 Missense_Mutation p.L494M 0.29 deleterious(0) probably_damaging(0.996) TCGA-D7-5577-01 13 101747983 101747983 A G NALCN Silent p.L1071L 0.36 TCGA-D7-5577-01 13 28239925 28239925 C T POLR1D Silent p.G68G 0.05 TCGA-D7-5577-01 13 36124666 36124666 G A NBEA Missense_Mutation p.R2213Q 0.26 deleterious(0.03) possibly_damaging(0.724) TCGA-D7-5577-01 13 70275859 70275859 C T KLHL1 Missense_Mutation p.C741Y 0.18 deleterious(0) possibly_damaging(0.864) TCGA-D7-5577-01 14 104027227 104027227 A G BAG5 Missense_Mutation p.I133T 0.31 deleterious(0.04) benign(0.117) TCGA-D7-5577-01 14 20296524 20296526 TAG AA OR4N2 Frame_Shift_Del p.I306Kfs*? 0.14 TCGA-D7-5577-01 15 40462775 40462775 G A BUB1B Missense_Mutation p.G93R 0.28 deleterious(0) probably_damaging(1) TCGA-D7-5577-01 15 50152452 50152452 A T ATP8B4 Nonsense_Mutation p.L1173* 0.33 TCGA-D7-5577-01 15 66774131 66774131 G A MAP2K1 Missense_Mutation p.E203K 0.36 deleterious(0) probably_damaging(0.995) TCGA-D7-5577-01 15 82335987 82335987 G A MEX3B Silent p.S408S 0.30 TCGA-D7-5577-01 16 1129558 1129558 G A SSTR5 Silent p.A230A 0.35 TCGA-D7-5577-01 16 2350053 2350053 C T ABCA3 Missense_Mutation p.E522K 0.37 deleterious(0) probably_damaging(0.971) TCGA-D7-5577-01 17 10397924 10397924 G A MYH1 Missense_Mutation p.R1845C 0.25 deleterious(0.02) probably_damaging(0.971) TCGA-D7-5577-01 17 15522558 15522558 G A CDRT1 Missense_Mutation p.S90F 0.07 deleterious(0) possibly_damaging(0.794) TCGA-D7-5577-01 17 1577953 1577953 A T PRPF8 Missense_Mutation p.Y1028N 0.27 deleterious(0.01) possibly_damaging(0.756) TCGA-D7-5577-01 17 26101464 26101464 G A NOS2 Missense_Mutation p.T432I 0.29 deleterious(0) probably_damaging(0.987) TCGA-D7-5577-01 17 33289127 33289127 G A ZNF830 Missense_Mutation p.S181N 0.06 tolerated(0.29) benign(0.138) TCGA-D7-5577-01 17 46700468 46700468 G A HOXB9 Missense_Mutation p.R183C 0.30 deleterious(0) probably_damaging(0.988) TCGA-D7-5577-01 17 60769610 60769610 C T MRC2 Missense_Mutation p.A1413V 0.24 tolerated(1) benign(0.003) TCGA-D7-5577-01 17 65689056 65689056 T G PITPNC1 3'UTR 0.35 TCGA-D7-5577-01 18 19383901 19383901 C T MIB1 Nonsense_Mutation p.Q469* 0.33 TCGA-D7-5577-01 18 31325922 31325922 C T ASXL3 Missense_Mutation p.P2037L 0.44 probably_damaging(0.997) TCGA-D7-5577-01 18 480756 480756 G A COLEC12 Silent p.D3D 0.20 TCGA-D7-5577-01 18 51813768 51813768 G A POLI Silent p.Q395Q 0.31 TCGA-D7-5577-01 18 8076563 8076563 G T PTPRM Splice_Site p.X517_splice 0.20 TCGA-D7-5577-01 19 11565632 11565632 C T ELAVL3 Silent p.A271A 0.07 TCGA-D7-5577-01 19 14015710 14015710 T C C19orf57 5'UTR 0.32 TCGA-D7-5577-01 19 17450345 17450345 C T GTPBP3 Missense_Mutation p.T336M 0.43 deleterious(0) probably_damaging(0.998) TCGA-D7-5577-01 19 22362735 22362735 C - ZNF676 3'UTR 0.14 TCGA-D7-5577-01 19 33090904 33090904 G A ANKRD27 Silent p.Y940Y 0.17 TCGA-D7-5577-01 19 35823667 35823667 G A CD22 Silent p.K84K 0.11 TCGA-D7-5577-01 19 55330051 55330051 A C KIR3DL1 Missense_Mutation p.T118P 0.50 deleterious(0.03) possibly_damaging(0.795) TCGA-D7-5577-01 19 57058966 57058966 G C ZFP28 Missense_Mutation p.K130N 0.20 tolerated(0.31) benign(0.01) TCGA-D7-5577-01 19 57328826 57328826 C T PEG3 Silent p.S328S 0.22 TCGA-D7-5577-01 19 57335782 57335782 G A PEG3 Missense_Mutation p.T81I 0.57 deleterious(0.01) possibly_damaging(0.631) TCGA-D7-5577-01 19 58982663 58982663 G C ZNF324 Missense_Mutation p.K268N 0.14 tolerated(0.07) probably_damaging(0.998) TCGA-D7-5577-01 1 100152261 100152261 A C PALMD Missense_Mutation p.K94T 0.38 tolerated(0.3) probably_damaging(0.938) TCGA-D7-5577-01 1 100203814 100203814 G A FRRS1 Missense_Mutation p.S196L 0.21 tolerated(0.23) benign(0.012) TCGA-D7-5577-01 1 100949859 100949859 C T CDC14A Missense_Mutation p.S330L 0.29 tolerated(0.55) benign(0.032) TCGA-D7-5577-01 1 119428075 119428075 A G TBX15 Silent p.S257S 0.42 TCGA-D7-5577-01 1 13365903 13365903 G C PRAMEF5 Missense_Mutation p.W116S 0.19 deleterious(0.01) possibly_damaging(0.881) TCGA-D7-5577-01 1 146397414 146397414 C G NBPF12 Missense_Mutation p.F77L 0.22 benign(0.302) TCGA-D7-5577-01 1 156756800 156756800 C T PRCC Missense_Mutation p.T306M 0.29 tolerated(0.18) benign(0.019) TCGA-D7-5577-01 1 167095276 167095276 G A DUSP27 Missense_Mutation p.S303N 0.21 deleterious(0) possibly_damaging(0.791) TCGA-D7-5577-01 1 167805735 167805735 C T ADCY10 Missense_Mutation p.V1041I 0.30 tolerated(0.72) benign(0.002) TCGA-D7-5577-01 1 201618005 201618005 G T NAV1 Missense_Mutation p.G70V 0.22 deleterious(0.01) benign(0.053) TCGA-D7-5577-01 1 22178378 22178378 G A HSPG2 Silent p.A2304A 0.42 TCGA-D7-5577-01 1 231678314 231678314 A T TSNAX Silent p.L108L 0.33 TCGA-D7-5577-01 1 234367425 234367425 G A SLC35F3 Silent p.P182P 0.06 TCGA-D7-5577-01 1 240072304 240072304 A G CHRM3 Missense_Mutation p.D518G 0.03 tolerated(0.22) benign(0.005) TCGA-D7-5577-01 1 26104716 26104716 G A MAN1C1 Missense_Mutation p.A460T 0.37 deleterious(0.02) probably_damaging(0.919) TCGA-D7-5577-01 1 27101054 27101054 C T ARID1A Nonsense_Mutation p.R1446* 0.28 TCGA-D7-5577-01 1 33147381 33147381 A G SYNC 3'UTR 0.34 TCGA-D7-5577-01 1 9009453 9009453 T A CA6 Missense_Mutation p.Y71N 0.23 deleterious(0) probably_damaging(1) TCGA-D7-5577-01 1 92184966 92184966 T G TGFBR3 Missense_Mutation p.K490T 0.31 tolerated(0.5) benign(0.019) TCGA-D7-5577-01 20 1902326 1902326 G A SIRPA Missense_Mutation p.R241H 0.20 deleterious(0.03) benign(0.007) TCGA-D7-5577-01 20 29632693 29632693 G A FRG1B Missense_Mutation p.G170R 0.04 deleterious(0) probably_damaging(0.98) TCGA-D7-5577-01 20 39832021 39832021 G A ZHX3 Silent p.S512S 0.26 TCGA-D7-5577-01 20 44430674 44430674 G A DNTTIP1 Missense_Mutation p.D179N 0.21 tolerated(0.08) benign(0.162) TCGA-D7-5577-01 20 45852980 45852980 G T ZMYND8 Nonsense_Mutation p.C1036* 0.26 TCGA-D7-5577-01 20 62654204 62654204 C T PRPF6 Missense_Mutation p.A581V 0.17 tolerated(0.07) possibly_damaging(0.777) TCGA-D7-5577-01 21 15517057 15517057 A - LIPI Frame_Shift_Del p.F415Lfs*2 0.19 TCGA-D7-5577-01 22 23029496 23029496 C A IGLV3-25 Missense_Mutation p.P33Q 0.33 tolerated(0.1) benign(0.019) TCGA-D7-5577-01 22 30416326 30416326 C T MTMR3 Missense_Mutation p.P893L 0.33 tolerated_low_confidence(0.11) benign(0.003) TCGA-D7-5577-01 22 42321482 42321484 AGG - TNFRSF13C In_Frame_Del p.P148del 0.30 TCGA-D7-5577-01 22 44335951 44335951 A G PNPLA3 Missense_Mutation p.Y353C 0.30 deleterious(0) possibly_damaging(0.728) TCGA-D7-5577-01 2 125547588 125547588 G A CNTNAP5 Silent p.R953R 0.26 TCGA-D7-5577-01 2 130832580 130832580 A C POTEF Missense_Mutation p.I822S 0.39 deleterious_low_confidence(0.01) probably_damaging(0.92) TCGA-D7-5577-01 2 135926202 135926202 C A RAB3GAP1 Missense_Mutation p.P940T 0.36 tolerated(0.29) benign(0.014) TCGA-D7-5577-01 2 179404632 179404632 G A TTN Silent p.G32720G 0.26 TCGA-D7-5577-01 2 179553493 179553493 T G TTN Missense_Mutation p.K10703T 0.37 TCGA-D7-5577-01 2 179590293 179590293 C T TTN Missense_Mutation p.A6880T 0.30 TCGA-D7-5577-01 2 21252873 21252873 T C APOB Missense_Mutation p.N456S 0.29 benign(0.027) TCGA-D7-5577-01 2 66795951 66795951 A C MEIS1 Intron 0.37 TCGA-D7-5577-01 2 85770889 85770889 A G MAT2A Silent p.K394K 0.30 TCGA-D7-5577-01 2 99443575 99443575 C T KIAA1211L Missense_Mutation p.D200N 0.33 deleterious(0.04) possibly_damaging(0.728) TCGA-D7-5577-01 3 120495484 120495484 G A GTF2E1 Missense_Mutation p.A289T 0.23 deleterious(0.03) benign(0.11) TCGA-D7-5577-01 3 13679190 13679190 C T FBLN2 Missense_Mutation p.A1156V 0.24 tolerated(0.31) benign(0.019) TCGA-D7-5577-01 3 154866382 154866382 A T MME Missense_Mutation p.N514I 0.67 tolerated(0.16) probably_damaging(0.995) TCGA-D7-5577-01 3 156395626 156395626 G A TIPARP Missense_Mutation p.R47K 0.35 tolerated_low_confidence(0.56) benign(0.047) TCGA-D7-5577-01 3 170102413 170102413 C T SKIL Missense_Mutation p.A430V 0.61 tolerated(0.66) benign(0.001) TCGA-D7-5577-01 3 178916876 178916876 G A PIK3CA Missense_Mutation p.R88Q 0.33 tolerated(0.06) probably_damaging(0.998) TCGA-D7-5577-01 3 178952074 178952074 G T PIK3CA Missense_Mutation p.M1043I 0.65 tolerated(0.11) benign(0.054) TCGA-D7-5577-01 3 195453120 195453120 C A MUC20 Missense_Mutation p.A549E 0.23 deleterious_low_confidence(0.02) unknown(0) TCGA-D7-5577-01 3 44636501 44636501 A C ZNF660 Missense_Mutation p.K272N 0.08 deleterious(0) probably_damaging(0.998) TCGA-D7-5577-01 4 119978661 119978661 G A SYNPO2 Missense_Mutation p.D1120N 0.33 tolerated(0.42) benign(0.018) TCGA-D7-5577-01 4 153897817 153897817 G A FHDC1 Missense_Mutation p.R1125H 0.32 deleterious(0.01) possibly_damaging(0.833) TCGA-D7-5577-01 4 178358635 178358635 G T AGA Nonsense_Mutation p.Y182* 0.29 TCGA-D7-5577-01 4 42414995 42414995 C T ATP8A1 Missense_Mutation p.V1145I 0.32 tolerated(0.29) possibly_damaging(0.897) TCGA-D7-5577-01 4 4864504 4864504 G A MSX1 Silent p.A182A 0.28 TCGA-D7-5577-01 4 6602463 6602463 G A MAN2B2 Missense_Mutation p.G507S 0.21 deleterious(0) probably_damaging(0.992) TCGA-D7-5577-01 5 11199625 11199625 C A CTNND2 Missense_Mutation p.G637V 0.25 deleterious(0) probably_damaging(1) TCGA-D7-5577-01 5 140175138 140175138 G A PCDHA2 Missense_Mutation p.G197R 0.34 tolerated_low_confidence(1) benign(0) TCGA-D7-5577-01 5 140188221 140188221 C T PCDHA4 Silent p.D483D 0.28 TCGA-D7-5577-01 5 156667170 156667170 C G ITK Missense_Mutation p.P317R 0.32 deleterious(0) possibly_damaging(0.86) TCGA-D7-5577-01 5 161522503 161522503 A C GABRG2 Missense_Mutation p.K88Q 0.14 deleterious(0.02) benign(0.121) TCGA-D7-5577-01 5 21755818 21755818 G T CDH12 Silent p.V589V 0.22 TCGA-D7-5577-01 5 43656015 43656015 T G NNT Silent p.G711G 0.27 TCGA-D7-5577-01 5 5463516 5463516 G T KIAA0947 Missense_Mutation p.D1357Y 0.20 deleterious(0.04) possibly_damaging(0.472) TCGA-D7-5577-01 5 72424237 72424237 C T TMEM171 Missense_Mutation p.P221S 0.30 deleterious(0.04) probably_damaging(1) TCGA-D7-5577-01 5 78076130 78076130 C T ARSB 3'UTR 0.09 TCGA-D7-5577-01 5 847644 847644 C T ZDHHC11 Missense_Mutation p.G163E 0.24 deleterious(0) probably_damaging(0.999) TCGA-D7-5577-01 6 118887330 118887330 T G CEP85L Missense_Mutation p.S131R 0.30 tolerated(0.1) benign(0.377) TCGA-D7-5577-01 6 125397843 125397843 G T RNF217 Missense_Mutation p.C149F 0.30 deleterious(0) probably_damaging(0.999) TCGA-D7-5577-01 6 41304116 41304116 C A NCR2 Missense_Mutation p.S115Y 0.31 deleterious(0) possibly_damaging(0.484) TCGA-D7-5577-01 6 44219805 44219805 T C HSP90AB1 Missense_Mutation p.V511A 0.34 deleterious(0) possibly_damaging(0.489) TCGA-D7-5577-01 6 87971005 87971005 C T ZNF292 Missense_Mutation p.A2553V 0.27 tolerated(0.44) benign(0.001) TCGA-D7-5577-01 6 90459388 90459388 C T MDN1 Silent p.A1163A 0.20 TCGA-D7-5577-01 7 104377336 104377336 G T LHFPL3 Missense_Mutation p.E220D 0.54 tolerated(0.35) probably_damaging(0.911) TCGA-D7-5577-01 7 123276961 123276970 CTACCACCAG - ASB15 Frame_Shift_Del p.P566Ffs*17 0.19 TCGA-D7-5577-01 7 24681385 24681385 C G MPP6 Missense_Mutation p.N56K 0.35 deleterious(0) probably_damaging(0.959) TCGA-D7-5577-01 7 57528910 57528910 A G ZNF716 Missense_Mutation p.K248R 0.29 deleterious(0.02) benign(0.021) TCGA-D7-5577-01 7 99997468 99997468 C T PILRA Missense_Mutation p.P284S 0.03 tolerated(0.07) benign(0.22) TCGA-D7-5577-01 8 104427608 104427608 G A DCAF13 Silent p.G130G 0.08 TCGA-D7-5577-01 8 11403589 11403589 C T BLK Missense_Mutation p.P51L 0.20 tolerated(0.08) benign(0.002) TCGA-D7-5577-01 8 116617160 116617160 A C TRPS1 Missense_Mutation p.F346V 0.33 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-D7-5577-01 8 22459490 22459490 C T C8orf58 Silent p.P221P 0.25 TCGA-D7-5577-01 8 2820858 2820858 G A CSMD1 Missense_Mutation p.R3114C 0.32 benign(0.017) TCGA-D7-5577-01 8 38704287 38704287 C T TACC1 Missense_Mutation p.R767C 0.29 deleterious(0) probably_damaging(0.99) TCGA-D7-5577-01 8 57905926 57905926 G A IMPAD1 Silent p.A73A 0.32 TCGA-D7-5577-01 8 69046341 69046341 G T PREX2 Missense_Mutation p.V1272L 0.35 deleterious(0.03) benign(0.235) TCGA-D7-5577-01 8 94935067 94935067 C T PDP1 Silent p.L285L 0.29 TCGA-D7-5577-01 9 102590479 102590479 C A NR4A3 Missense_Mutation p.T63N 0.33 deleterious(0.03) probably_damaging(0.999) TCGA-D7-5577-01 9 125681219 125681219 C T ZBTB26 Missense_Mutation p.G332E 0.27 tolerated(0.35) possibly_damaging(0.484) TCGA-D7-5577-01 9 35809900 35809900 T G SPAG8 Intron 0.35 TCGA-D7-5577-01 9 79933352 79933352 G A VPS13A Missense_Mutation p.E1720K 0.34 deleterious(0) possibly_damaging(0.852) TCGA-D7-5577-01 X 10093130 10093130 G A WWC3 Silent p.A631A 0.18 TCGA-D7-5577-01 X 11308531 11308531 A C ARHGAP6 Intron 0.30 TCGA-D7-5577-01 X 129185952 129185952 T G BCORL1 Missense_Mutation p.L1605R 0.33 probably_damaging(0.999) TCGA-D7-5577-01 X 150869083 150869084 - T PRRG3 Frame_Shift_Ins p.I93Dfs*49 0.31 TCGA-D7-5577-01 X 154088774 154088774 T G F8 Missense_Mutation p.E2278A 0.29 deleterious(0) possibly_damaging(0.548) TCGA-D7-5577-01 X 49846487 49846487 G A CLCN5 Missense_Mutation p.E306K 0.08 deleterious(0) probably_damaging(0.997) TCGA-D7-5577-01 X 54823454 54823454 A T ITIH6 Missense_Mutation p.F60I 0.30 tolerated(0.17) benign(0.016) TCGA-D7-5577-01 X 5810979 5810979 T A NLGN4X Missense_Mutation p.N777I 0.25 deleterious_low_confidence(0) benign(0.368) TCGA-D7-5577-01 X 65242139 65242139 T G VSIG4 Missense_Mutation p.E389A 0.13 deleterious(0.01) benign(0.162) TCGA-D7-5577-01 X 91132785 91132785 G T PCDH11X Missense_Mutation p.D516Y 0.28 deleterious(0) probably_damaging(1) TCGA-D7-5578-01 10 103826688 103826688 C A HPS6 Missense_Mutation p.A486E 0.38 deleterious(0.01) probably_damaging(0.972) TCGA-D7-5578-01 10 127542584 127542584 C A DHX32 Missense_Mutation p.L346F 0.29 tolerated(0.18) benign(0.143) TCGA-D7-5578-01 10 13178767 13178767 G A OPTN Silent p.R545R 0.04 TCGA-D7-5578-01 10 134006169 134006169 G A DPYSL4 Missense_Mutation p.G46R 0.16 deleterious(0.01) probably_damaging(1) TCGA-D7-5578-01 10 26800822 26800822 G A APBB1IP Silent p.P226P 0.24 TCGA-D7-5578-01 10 71332375 71332375 G T NEUROG3 Missense_Mutation p.A142E 0.19 deleterious(0.01) possibly_damaging(0.855) TCGA-D7-5578-01 10 76803766 76803766 C T DUPD1 Silent p.A70A 0.25 TCGA-D7-5578-01 10 84711235 84711235 A C NRG3 Missense_Mutation p.E355D 0.21 tolerated(0.18) benign(0.019) TCGA-D7-5578-01 10 96972614 96972614 G C C10orf129 Splice_Site p.X305_splice 0.19 TCGA-D7-5578-01 11 101362341 101362341 G A TRPC6 Silent p.H358H 0.22 TCGA-D7-5578-01 11 102937031 102937031 C T DCUN1D5 Nonsense_Mutation p.W174* 0.22 TCGA-D7-5578-01 11 106558256 106558256 C G GUCY1A2 3'UTR 0.22 TCGA-D7-5578-01 11 129775606 129775606 G T PRDM10 Missense_Mutation p.P1069Q 0.20 tolerated_low_confidence(0.53) benign(0.005) TCGA-D7-5578-01 11 14276115 14276115 G A SPON1 RNA 0.26 TCGA-D7-5578-01 11 3697502 3697502 G A NUP98 Missense_Mutation p.R1764C 0.09 tolerated(0.12) possibly_damaging(0.885) TCGA-D7-5578-01 11 47350618 47350618 G A MADD Missense_Mutation p.V1621I 0.05 deleterious(0.03) probably_damaging(0.993) TCGA-D7-5578-01 11 48510526 48510526 T C OR4A47 Missense_Mutation p.L61P 0.27 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-D7-5578-01 11 51411522 51411522 T G OR4A5 Silent p.R292R 0.12 TCGA-D7-5578-01 11 55340006 55340006 A C OR4C16 Missense_Mutation p.S135R 0.25 tolerated(0.34) benign(0.342) TCGA-D7-5578-01 11 55432670 55432670 T A OR4C6 Missense_Mutation p.F10I 0.26 deleterious_low_confidence(0) possibly_damaging(0.838) TCGA-D7-5578-01 11 55890015 55890015 T G OR8H3 Missense_Mutation p.L56R 0.19 deleterious(0) probably_damaging(0.988) TCGA-D7-5578-01 11 56000460 56000460 A C OR5T2 Missense_Mutation p.F68V 0.21 tolerated(0.79) benign(0.009) TCGA-D7-5578-01 11 56044028 56044028 G A OR5T1 Missense_Mutation p.R305Q 0.23 deleterious(0.01) probably_damaging(0.935) TCGA-D7-5578-01 11 56184767 56184767 T C OR5R1 Missense_Mutation p.I314M 0.32 tolerated(0.6) benign(0.002) TCGA-D7-5578-01 11 5758135 5758136 AT - OR56B1 Frame_Shift_Del p.D130Efs*46 0.20 TCGA-D7-5578-01 11 65650818 65650818 C G CTSW Missense_Mutation p.Q315E 0.09 tolerated(1) benign(0.039) TCGA-D7-5578-01 11 67766770 67766770 G A UNC93B1 Missense_Mutation p.A187V 0.33 deleterious(0.01) possibly_damaging(0.718) TCGA-D7-5578-01 11 71907066 71907066 G A FOLR1 Missense_Mutation p.G207S 0.26 deleterious(0) probably_damaging(0.934) TCGA-D7-5578-01 11 92087018 92087018 A G FAT3 Silent p.K580K 0.21 TCGA-D7-5578-01 11 93844120 93844120 C T HEPHL1 Nonsense_Mutation p.Q1033* 0.20 TCGA-D7-5578-01 12 104157271 104157271 C A STAB2 Nonsense_Mutation p.S2497* 0.30 TCGA-D7-5578-01 12 118198882 118198882 G A KSR2 Missense_Mutation p.A307V 0.30 deleterious(0.02) benign(0.035) TCGA-D7-5578-01 12 122763599 122763599 G A CLIP1 Silent p.A1247A 0.25 TCGA-D7-5578-01 12 14949824 14949824 C T WBP11 Missense_Mutation p.D102N 0.32 deleterious(0.01) unknown(0) TCGA-D7-5578-01 12 19427792 19427792 T C PLEKHA5 Silent p.N396N 0.34 TCGA-D7-5578-01 12 20833192 20833192 A C PDE3A Missense_Mutation p.K1138T 0.22 deleterious_low_confidence(0.02) benign(0.403) TCGA-D7-5578-01 12 20903812 20903812 C A SLCO1C1 Missense_Mutation p.H668N 0.05 tolerated(0.5) benign(0) TCGA-D7-5578-01 12 21728967 21728967 C A GYS2 Nonsense_Mutation p.E110* 0.24 TCGA-D7-5578-01 12 3047401 3047401 G A TULP3 Missense_Mutation p.R382Q 0.34 deleterious(0) probably_damaging(1) TCGA-D7-5578-01 12 3649831 3649831 C T PRMT8 Silent p.C45C 0.05 TCGA-D7-5578-01 12 4735889 4735889 C A AKAP3 Nonsense_Mutation p.E727* 0.12 TCGA-D7-5578-01 12 49689232 49689232 C T PRPH Silent p.A83A 0.20 TCGA-D7-5578-01 12 52818108 52818108 G A KRT75 3'UTR 0.30 TCGA-D7-5578-01 12 52818448 52818448 G A KRT75 Silent p.S503S 0.31 TCGA-D7-5578-01 12 53421886 53421886 A G EIF4B Missense_Mutation p.Y298C 0.33 tolerated(0.16) possibly_damaging(0.759) TCGA-D7-5578-01 12 53900648 53900648 C T NPFF Missense_Mutation p.R85K 0.28 tolerated(0.2) benign(0.008) TCGA-D7-5578-01 12 55862995 55862995 A T OR6C70 Missense_Mutation p.S310T 0.07 tolerated_low_confidence(0.13) benign(0.004) TCGA-D7-5578-01 12 56118266 56118266 A C RDH5 Silent p.P298P 0.20 TCGA-D7-5578-01 12 56383868 56383868 G A RAB5B Missense_Mutation p.D101N 0.27 deleterious(0.01) probably_damaging(0.984) TCGA-D7-5578-01 12 6670217 6670217 C G NOP2 Silent p.T442T 0.25 TCGA-D7-5578-01 12 7055884 7055884 G C PTPN6 5'Flank 0.32 TCGA-D7-5578-01 12 78515734 78515734 A T NAV3 Missense_Mutation p.K1255M 0.30 deleterious(0) probably_damaging(1) TCGA-D7-5578-01 12 93148040 93148040 C T PLEKHG7 Missense_Mutation p.R164W 0.22 tolerated(0.09) benign(0.032) TCGA-D7-5578-01 13 102527574 102527574 C A FGF14 Missense_Mutation p.G94V 0.54 deleterious(0) probably_damaging(0.983) TCGA-D7-5578-01 13 113803380 113803380 C T F10 Missense_Mutation p.A339V 0.60 tolerated(1) probably_damaging(0.956) TCGA-D7-5578-01 13 22033233 22033233 G A ZDHHC20 Silent p.V26V 0.44 TCGA-D7-5578-01 13 25744011 25744011 G A AMER2 Missense_Mutation p.R583W 0.62 deleterious(0) probably_damaging(1) TCGA-D7-5578-01 13 35733293 35733293 A C NBEA Missense_Mutation p.K995N 0.60 tolerated_low_confidence(0.49) benign(0.002) TCGA-D7-5578-01 13 36049942 36049942 G C MAB21L1 Missense_Mutation p.L112V 0.29 tolerated(0.4) probably_damaging(0.994) TCGA-D7-5578-01 13 37014128 37014128 G A CCNA1 Silent p.E302E 0.59 TCGA-D7-5578-01 13 86370524 86370524 T G SLITRK6 Missense_Mutation p.K40N 0.27 deleterious(0.01) probably_damaging(0.968) TCGA-D7-5578-01 14 100381009 100381009 G A EML1 Missense_Mutation p.R595H 0.25 tolerated(0.06) benign(0.005) TCGA-D7-5578-01 14 105211180 105211180 G A ADSSL1 Missense_Mutation p.V412I 0.21 tolerated(0.19) benign(0.079) TCGA-D7-5578-01 14 105408763 105408763 T C AHNAK2 Missense_Mutation p.K4342R 0.30 possibly_damaging(0.907) TCGA-D7-5578-01 14 106321184 106321184 T G IGHM Missense_Mutation p.T269P 0.28 deleterious(0.03) possibly_damaging(0.809) TCGA-D7-5578-01 14 20249095 20249095 T C OR4M1 Missense_Mutation p.L205P 0.19 deleterious(0) probably_damaging(0.997) TCGA-D7-5578-01 14 21992247 21992247 C T SALL2 Missense_Mutation p.V539M 0.25 tolerated(0.16) possibly_damaging(0.534) TCGA-D7-5578-01 14 22217974 22217974 T G TRAV5 Missense_Mutation p.F109V 0.31 deleterious(0.01) probably_damaging(0.954) TCGA-D7-5578-01 14 23887536 23887536 G A MYH7 Missense_Mutation p.T1351M 0.17 deleterious(0.03) benign(0.029) TCGA-D7-5578-01 14 62550996 62550996 C T SYT16 Missense_Mutation p.A506V 0.23 tolerated(1) benign(0.001) TCGA-D7-5578-01 14 65507516 65507516 A G FNTB Missense_Mutation p.N234S 0.20 deleterious(0.03) benign(0.021) TCGA-D7-5578-01 14 69347567 69347567 G A ACTN1 Missense_Mutation p.A698V 0.26 deleterious(0.01) benign(0.196) TCGA-D7-5578-01 14 86089096 86089096 G A FLRT2 Missense_Mutation p.G413D 0.26 tolerated(0.42) benign(0.001) TCGA-D7-5578-01 15 23811376 23811376 C T MKRN3 Silent p.I149I 0.30 TCGA-D7-5578-01 15 27184420 27184420 A T GABRA5 Intron 0.24 TCGA-D7-5578-01 15 56208746 56208746 C T NEDD4 Missense_Mutation p.R95K 0.05 tolerated_low_confidence(0.43) benign(0.004) TCGA-D7-5578-01 15 60789633 60789633 G C RORA 3'UTR 0.07 TCGA-D7-5578-01 15 80743252 80743252 G A ARNT2 Silent p.T21T 0.31 TCGA-D7-5578-01 16 15797934 15797934 G A MYH11 Missense_Mutation p.R1952C 0.24 possibly_damaging(0.634) TCGA-D7-5578-01 16 23360100 23360100 C T SCNN1B Silent p.A60A 0.26 TCGA-D7-5578-01 16 28890083 28890083 C T ATP2A1 Missense_Mutation p.R31W 0.25 deleterious(0.02) possibly_damaging(0.899) TCGA-D7-5578-01 16 49313471 49313471 G A CBLN1 Silent p.F142F 0.23 TCGA-D7-5578-01 16 61851476 61851476 G T CDH8 Missense_Mutation p.T395N 0.34 tolerated(0.35) benign(0.057) TCGA-D7-5578-01 16 64981966 64981966 T G CDH11 Missense_Mutation p.K644T 0.34 deleterious(0) probably_damaging(0.998) TCGA-D7-5578-01 16 67261014 67261014 G A FHOD1 3'Flank 0.29 TCGA-D7-5578-01 16 70367615 70367615 T C DDX19B 3'UTR 0.23 TCGA-D7-5578-01 16 70986528 70986528 T G HYDIN Silent p.A2109A 0.20 TCGA-D7-5578-01 16 84024157 84024157 C T NECAB2 Missense_Mutation p.T173M 0.33 deleterious(0.02) probably_damaging(0.971) TCGA-D7-5578-01 16 84163759 84163759 G A HSDL1 Silent p.S166S 0.25 TCGA-D7-5578-01 16 89807289 89807289 G A ZNF276 3'Flank 0.25 TCGA-D7-5578-01 17 16042436 16042436 C T NCOR1 Missense_Mutation p.R413K 0.36 benign(0.298) TCGA-D7-5578-01 17 18208465 18208465 C T TOP3A Missense_Mutation p.E154K 0.17 deleterious(0) probably_damaging(1) TCGA-D7-5578-01 17 263226 263226 C T C17orf97 Missense_Mutation p.R198W 0.51 tolerated(0.12) possibly_damaging(0.656) TCGA-D7-5578-01 17 27613685 27613685 G C NUFIP2 Missense_Mutation p.L443V 0.16 tolerated(1) benign(0.003) TCGA-D7-5578-01 17 3181605 3181605 A T OR3A2 Missense_Mutation p.F209I 0.29 deleterious(0) possibly_damaging(0.838) TCGA-D7-5578-01 17 41063341 41063341 C A G6PC Silent p.V324V 0.31 TCGA-D7-5578-01 17 64880742 64880742 G A CACNG5 Silent p.S178S 0.28 TCGA-D7-5578-01 17 73500726 73500726 C A CASKIN2 Missense_Mutation p.R414L 0.24 deleterious(0) probably_damaging(0.953) TCGA-D7-5578-01 17 7577127 7577127 C T TP53 Missense_Mutation p.E271K 0.55 deleterious(0) probably_damaging(0.999) TCGA-D7-5578-01 17 79077493 79077493 G T BAIAP2 Silent p.P278P 0.25 TCGA-D7-5578-01 17 79864773 79864773 C T PCYT2 Missense_Mutation p.C198Y 0.14 tolerated(0.49) benign(0.196) TCGA-D7-5578-01 17 9808519 9808519 G A RCVRN 5'UTR 0.33 TCGA-D7-5578-01 18 40323674 40323674 T G RIT2 Missense_Mutation p.E146D 0.52 tolerated(0.2) benign(0.015) TCGA-D7-5578-01 19 10795448 10795448 C - ILF3 Intron 0.55 TCGA-D7-5578-01 19 15063786 15063786 A T SLC1A6 Missense_Mutation p.L485M 0.04 deleterious(0) probably_damaging(0.977) TCGA-D7-5578-01 19 15289981 15289981 G A NOTCH3 Silent p.C1191C 0.15 TCGA-D7-5578-01 19 19413155 19413155 T C SUGP1 Missense_Mutation p.K269R 0.70 tolerated(0.16) benign(0.216) TCGA-D7-5578-01 19 21606405 21606405 A G ZNF493 Missense_Mutation p.H315R 0.72 deleterious(0.01) unknown(0) TCGA-D7-5578-01 19 21992435 21992435 T C ZNF43 Missense_Mutation p.N135S 0.28 tolerated(0.21) possibly_damaging(0.777) TCGA-D7-5578-01 19 22270892 22270892 A C ZNF257 Silent p.R114R 0.05 TCGA-D7-5578-01 19 22362555 22362555 G A ZNF676 3'UTR 0.45 TCGA-D7-5578-01 19 22574847 22574847 T G ZNF98 Missense_Mutation p.K397T 0.27 deleterious(0) benign(0.404) TCGA-D7-5578-01 19 23927705 23927705 T G ZNF681 Missense_Mutation p.H216P 0.35 deleterious(0) possibly_damaging(0.904) TCGA-D7-5578-01 19 31040340 31040340 A G ZNF536 Missense_Mutation p.S1272G 0.26 deleterious_low_confidence(0.02) benign(0.001) TCGA-D7-5578-01 19 37904498 37904498 A T ZNF569 Nonsense_Mutation p.Y354* 0.29 TCGA-D7-5578-01 19 37904499 37904499 T A ZNF569 Missense_Mutation p.Y354F 0.29 tolerated(0.09) probably_damaging(0.99) TCGA-D7-5578-01 19 38945944 38945944 G A RYR1 Missense_Mutation p.E504K 0.32 probably_damaging(0.953) TCGA-D7-5578-01 19 43358304 43358304 T C PSG10P RNA 0.28 TCGA-D7-5578-01 19 58640356 58640356 T G ZNF329 Missense_Mutation p.K172T 0.36 deleterious(0.04) benign(0.264) TCGA-D7-5578-01 19 8841983 8841983 C T OR2Z1 Missense_Mutation p.A198V 0.42 tolerated(0.66) benign(0.099) TCGA-D7-5578-01 19 9922149 9922149 T C FBXL12 Missense_Mutation p.E135G 0.24 deleterious(0) probably_damaging(0.959) TCGA-D7-5578-01 1 11808641 11808641 G A AGTRAP Missense_Mutation p.R113H 0.29 deleterious(0) probably_damaging(1) TCGA-D7-5578-01 1 120462932 120462932 C T NOTCH2 Missense_Mutation p.R1800H 0.16 deleterious(0) benign(0.444) TCGA-D7-5578-01 1 14105854 14105854 G C PRDM2 Missense_Mutation p.E522Q 0.06 possibly_damaging(0.723) TCGA-D7-5578-01 1 142803429 142803429 A C RP11-423O2.5 RNA 0.09 TCGA-D7-5578-01 1 151039794 151039794 C G MLLT11 Missense_Mutation p.L32V 0.25 tolerated(0.09) probably_damaging(0.996) TCGA-D7-5578-01 1 152084947 152084947 C T TCHH Missense_Mutation p.R249H 0.25 unknown(0) TCGA-D7-5578-01 1 152671739 152671739 T G LCE2A 3'UTR 0.28 TCGA-D7-5578-01 1 153274943 153274943 C T PGLYRP3 Missense_Mutation p.V224I 0.25 tolerated(0.1) benign(0.05) TCGA-D7-5578-01 1 153653765 153653765 G A NPR1 Missense_Mutation p.G344D 0.43 tolerated(0.23) benign(0.04) TCGA-D7-5578-01 1 155583270 155583270 C A MSTO1 Missense_Mutation p.T434K 0.19 tolerated(0.42) benign(0.027) TCGA-D7-5578-01 1 158589972 158589972 A G SPTA1 Silent p.S2135S 0.25 TCGA-D7-5578-01 1 158647617 158647617 T C SPTA1 Missense_Mutation p.T274A 0.40 tolerated(0.13) benign(0.03) TCGA-D7-5578-01 1 159805121 159805121 A C SLAMF8 3'UTR 0.46 TCGA-D7-5578-01 1 159846399 159846399 G A CCDC19 Silent p.H433H 0.41 TCGA-D7-5578-01 1 167992232 167992234 CTT - DCAF6 In_Frame_Del p.S521del 0.15 TCGA-D7-5578-01 1 171249946 171249946 G A FMO1 Missense_Mutation p.G217R 0.20 deleterious(0) probably_damaging(0.989) TCGA-D7-5578-01 1 18809393 18809393 G A KLHDC7A Missense_Mutation p.G640S 0.25 deleterious(0) probably_damaging(1) TCGA-D7-5578-01 1 19181079 19181079 G A TAS1R2 Silent p.G295G 0.33 TCGA-D7-5578-01 1 19181261 19181261 C T TAS1R2 Missense_Mutation p.A235T 0.25 deleterious(0.02) probably_damaging(1) TCGA-D7-5578-01 1 197008422 197008422 A C F13B 3'UTR 0.27 TCGA-D7-5578-01 1 211654555 211654555 C T RD3 Missense_Mutation p.R68Q 0.47 tolerated(0.08) benign(0.105) TCGA-D7-5578-01 1 221057864 221057864 G A HLX Missense_Mutation p.G429S 0.29 tolerated_low_confidence(0.44) benign(0.051) TCGA-D7-5578-01 1 236730096 236730096 C G HEATR1 Silent p.A1386A 0.18 TCGA-D7-5578-01 1 237753203 237753203 G C RYR2 Missense_Mutation p.E1237Q 0.33 benign(0.05) TCGA-D7-5578-01 1 237777344 237777344 T C RYR2 Missense_Mutation p.V1639A 0.28 benign(0.001) TCGA-D7-5578-01 1 248512384 248512384 T - OR14C36 Frame_Shift_Del p.F105Lfs*28 0.24 TCGA-D7-5578-01 1 25229132 25229132 G A RUNX3 Silent p.S257S 0.31 TCGA-D7-5578-01 1 38058379 38058379 G C GNL2 Missense_Mutation p.L60V 0.07 tolerated(0.36) probably_damaging(0.932) TCGA-D7-5578-01 1 45292345 45292345 G A PTCH2 Missense_Mutation p.R931W 0.25 deleterious(0.02) probably_damaging(0.96) TCGA-D7-5578-01 1 76878075 76878075 T A ST6GALNAC3 Missense_Mutation p.V199D 0.30 probably_damaging(0.912) TCGA-D7-5578-01 1 86826217 86826217 A G ODF2L Silent p.T382T 0.24 TCGA-D7-5578-01 20 25484648 25484648 G A NINL Silent p.P267P 0.27 TCGA-D7-5578-01 20 33578612 33578612 C T MYH7B Silent p.N725N 0.20 TCGA-D7-5578-01 20 43955966 43955966 T C SDC4 Missense_Mutation p.S179G 0.25 deleterious(0) possibly_damaging(0.796) TCGA-D7-5578-01 20 57767362 57767362 C T ZNF831 Missense_Mutation p.R430W 0.29 deleterious(0) probably_damaging(0.999) TCGA-D7-5578-01 20 62837128 62837128 G C MYT1 Missense_Mutation p.E124D 0.25 benign(0.001) TCGA-D7-5578-01 21 28211920 28211920 C G ADAMTS1 Missense_Mutation p.V672L 0.07 deleterious(0) possibly_damaging(0.9) TCGA-D7-5578-01 21 31709567 31709567 A G KRTAP27-1 Silent p.S140S 0.24 TCGA-D7-5578-01 21 38494204 38494204 A - TTC3 Frame_Shift_Del p.N331Mfs*9 0.27 TCGA-D7-5578-01 21 46326905 46326905 C T ITGB2 Missense_Mutation p.A85T 0.24 tolerated(0.47) benign(0.037) TCGA-D7-5578-01 21 46603400 46603400 C T ADARB1 Silent p.F457F 0.36 TCGA-D7-5578-01 21 47532203 47532203 G A COL6A2 Silent p.T142T 0.31 TCGA-D7-5578-01 22 16448935 16448935 A T OR11H1 Silent p.T290T 0.42 TCGA-D7-5578-01 22 21347143 21347143 G A LZTR1 Missense_Mutation p.G404R 0.50 deleterious(0.01) probably_damaging(0.997) TCGA-D7-5578-01 22 39883517 39883517 G A MGAT3 Silent p.P55P 0.44 TCGA-D7-5578-01 22 40036887 40036887 C T CACNA1I Silent p.A252A 0.42 TCGA-D7-5578-01 2 144728242 144728242 T A GTDC1 Silent p.G321G 0.26 TCGA-D7-5578-01 2 152397971 152397971 A C NEB Missense_Mutation p.L6891R 0.28 probably_damaging(0.976) TCGA-D7-5578-01 2 167992437 167992437 A C XIRP2 Missense_Mutation p.S143R 0.18 possibly_damaging(0.734) TCGA-D7-5578-01 2 169707670 169707670 T C NOSTRIN Missense_Mutation p.L293P 0.25 tolerated(0.31) benign(0.284) TCGA-D7-5578-01 2 185803164 185803164 G A ZNF804A Missense_Mutation p.G1014D 0.26 deleterious(0.02) probably_damaging(0.998) TCGA-D7-5578-01 2 198949309 198949309 C T PLCL1 Silent p.I356I 0.06 TCGA-D7-5578-01 2 198949329 198949329 C G PLCL1 Missense_Mutation p.S363C 0.06 deleterious(0.04) probably_damaging(0.997) TCGA-D7-5578-01 2 210557512 210557512 T G MAP2 Silent p.T206T 0.20 TCGA-D7-5578-01 2 215891609 215891609 C A ABCA12 Missense_Mutation p.S372I 0.26 tolerated(0.35) possibly_damaging(0.759) TCGA-D7-5578-01 2 227729651 227729651 T C RHBDD1 Missense_Mutation p.L81S 0.23 deleterious(0) probably_damaging(1) TCGA-D7-5578-01 2 228882341 228882341 G A SPHKAP Missense_Mutation p.R1077W 0.16 deleterious(0) probably_damaging(1) TCGA-D7-5578-01 2 27799411 27799411 C T C2orf16 5'UTR 0.24 TCGA-D7-5578-01 2 3391965 3391965 G A TRAPPC12 Missense_Mutation p.A191T 0.40 tolerated_low_confidence(1) benign(0.003) TCGA-D7-5578-01 2 38804623 38804623 G A HNRNPLL Missense_Mutation p.S280L 0.07 tolerated(0.27) benign(0.43) TCGA-D7-5578-01 2 49217713 49217713 T G FSHR Missense_Mutation p.K146N 0.31 tolerated(0.84) benign(0.005) TCGA-D7-5578-01 2 73900074 73900074 G A ALMS1P RNA 0.27 TCGA-D7-5578-01 2 74042217 74042217 G T C2orf78 Silent p.G289G 0.17 TCGA-D7-5578-01 3 111936286 111936286 T G SLC9C1 Intron 0.27 TCGA-D7-5578-01 3 115571349 115571349 T C LSAMP Silent p.Q210Q 0.23 TCGA-D7-5578-01 3 123419605 123419605 T G MYLK Missense_Mutation p.K904Q 0.30 deleterious(0.01) benign(0.403) TCGA-D7-5578-01 3 142234270 142234270 C A ATR Missense_Mutation p.W1490C 0.29 deleterious(0) probably_damaging(0.999) TCGA-D7-5578-01 3 160156416 160156416 G C TRIM59 Missense_Mutation p.L186V 0.03 tolerated(0.69) benign(0.011) TCGA-D7-5578-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.09 deleterious(0.02) probably_damaging(0.959) TCGA-D7-5578-01 3 183756164 183756164 C T HTR3D Missense_Mutation p.P296L 0.31 deleterious(0.02) benign(0.154) TCGA-D7-5578-01 3 40429568 40429568 G A ENTPD3 Missense_Mutation p.R7H 0.19 deleterious_low_confidence(0.04) benign(0.037) TCGA-D7-5578-01 3 46899746 46899746 G T MYL3 Silent p.I192I 0.25 TCGA-D7-5578-01 3 56026192 56026192 G A ERC2 Silent p.R716R 0.03 TCGA-D7-5578-01 3 71803291 71803291 G A GPR27 Missense_Mutation p.V31M 0.17 deleterious(0.03) benign(0.194) TCGA-D7-5578-01 3 74349045 74349045 G A CNTN3 Missense_Mutation p.R714W 0.15 deleterious(0) probably_damaging(1) TCGA-D7-5578-01 3 93733918 93733918 C A STX19 Missense_Mutation p.D66Y 0.18 deleterious(0.04) possibly_damaging(0.663) TCGA-D7-5578-01 3 97124019 97124019 G T EPHA6 Missense_Mutation p.R544S 0.22 tolerated(0.09) possibly_damaging(0.574) TCGA-D7-5578-01 3 98507289 98507289 A C ST3GAL6 Missense_Mutation p.K246N 0.33 tolerated(0.34) benign(0.102) TCGA-D7-5578-01 4 10023015 10023015 G A SLC2A9 Silent p.G13G 0.10 TCGA-D7-5578-01 4 118006001 118006001 G C TRAM1L1 Silent p.L183L 0.14 TCGA-D7-5578-01 4 126239277 126239277 A C FAT4 Missense_Mutation p.T571P 0.29 possibly_damaging(0.742) TCGA-D7-5578-01 4 126372259 126372259 G A FAT4 Missense_Mutation p.R3363Q 0.33 probably_damaging(0.999) TCGA-D7-5578-01 4 126372585 126372585 A C FAT4 Missense_Mutation p.T3472P 0.25 possibly_damaging(0.742) TCGA-D7-5578-01 4 126411255 126411255 T C FAT4 Silent p.P4426P 0.29 TCGA-D7-5578-01 4 149181165 149181165 C T NR3C2 Missense_Mutation p.G621D 0.04 deleterious(0) probably_damaging(0.982) TCGA-D7-5578-01 4 159568065 159568065 T G RXFP1 Missense_Mutation p.S490A 0.11 tolerated(1) benign(0.007) TCGA-D7-5578-01 4 175896943 175896943 C T ADAM29 Silent p.I89I 0.37 TCGA-D7-5578-01 4 17844978 17844978 G A NCAPG Missense_Mutation p.R993Q 0.32 deleterious(0.02) probably_damaging(0.992) TCGA-D7-5578-01 4 44624465 44624465 A T YIPF7 Missense_Mutation p.L270H 0.30 deleterious(0) probably_damaging(0.988) TCGA-D7-5578-01 4 46252227 46252227 G C GABRA2 3'UTR 0.26 TCGA-D7-5578-01 4 54966475 54966475 G T GSX2 5'UTR 0.32 TCGA-D7-5578-01 4 6086631 6086631 G T JAKMIP1 Nonsense_Mutation p.S299* 0.24 TCGA-D7-5578-01 5 111500702 111500702 G A EPB41L4A Silent p.L682L 0.05 TCGA-D7-5578-01 5 112174378 112174378 T G APC Silent p.L1029L 0.31 TCGA-D7-5578-01 5 112197085 112197085 T A SRP19 Silent p.A4A 0.19 TCGA-D7-5578-01 5 11236905 11236905 C T CTNND2 Silent p.P553P 0.27 TCGA-D7-5578-01 5 135276812 135276812 G A FBXL21 RNA 0.24 TCGA-D7-5578-01 5 140182291 140182291 G A PCDHA3 Silent p.A503A 0.27 TCGA-D7-5578-01 5 140236909 140236909 G A PCDHA10 Missense_Mutation p.A426T 0.24 deleterious_low_confidence(0.02) possibly_damaging(0.606) TCGA-D7-5578-01 5 140237036 140237036 C T PCDHA10 Missense_Mutation p.P468L 0.27 deleterious_low_confidence(0.02) benign(0.11) TCGA-D7-5578-01 5 140242853 140242853 G A AC005609.1 Silent p.S41S 0.34 TCGA-D7-5578-01 5 140559578 140559578 G C PCDHB8 Missense_Mutation p.A655P 0.28 deleterious_low_confidence(0) possibly_damaging(0.7) TCGA-D7-5578-01 5 140594941 140594941 G C PCDHB13 Missense_Mutation p.E416Q 0.29 tolerated_low_confidence(0.15) benign(0.072) TCGA-D7-5578-01 5 140734966 140734966 G A PCDHGA4 Missense_Mutation p.V67I 0.30 tolerated_low_confidence(0.12) benign(0.171) TCGA-D7-5578-01 5 153795429 153795429 C T GALNT10 Silent p.T530T 0.20 TCGA-D7-5578-01 5 177309397 177309397 C T RP11-423H2.1 RNA 0.13 TCGA-D7-5578-01 5 35670363 35670363 A G SPEF2 Intron 0.30 TCGA-D7-5578-01 5 42719406 42719406 T C GHR Silent p.H599H 0.32 TCGA-D7-5578-01 5 74135907 74135907 G A FAM169A Missense_Mutation p.S75L 0.06 tolerated(0.17) benign(0.276) TCGA-D7-5578-01 5 78417157 78417157 C T BHMT Silent p.P198P 0.10 TCGA-D7-5578-01 5 79026957 79026957 G A CMYA5 Missense_Mutation p.R790H 0.26 benign(0) TCGA-D7-5578-01 5 79031339 79031339 G A CMYA5 Missense_Mutation p.G2251S 0.29 benign(0.098) TCGA-D7-5578-01 5 98262168 98262168 T A CHD1 5'UTR 0.24 TCGA-D7-5578-01 5 99921994 99921994 G A FAM174A 3'UTR 0.25 TCGA-D7-5578-01 6 102069961 102069961 C A GRIK2 Missense_Mutation p.L85I 0.20 tolerated(0.43) benign(0.004) TCGA-D7-5578-01 6 123786070 123786070 C T TRDN Silent p.P304P 0.24 TCGA-D7-5578-01 6 133072431 133072431 A G VNN2 Silent p.L351L 0.23 TCGA-D7-5578-01 6 143095201 143095201 A C HIVEP2 Silent p.S225S 0.05 TCGA-D7-5578-01 6 15497183 15497183 C T JARID2 Missense_Mutation p.S576L 0.15 tolerated(0.13) benign(0.168) TCGA-D7-5578-01 6 168351867 168351867 G A MLLT4 Missense_Mutation p.R1271H 0.26 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-D7-5578-01 6 24205380 24205380 G A DCDC2 Intron 0.15 TCGA-D7-5578-01 6 26156642 26156642 G T HIST1H1E Silent p.A8A 0.17 TCGA-D7-5578-01 6 3273341 3273341 G A SLC22A23 Missense_Mutation p.A670V 0.31 tolerated(0.7) benign(0) TCGA-D7-5578-01 6 43400000 43400000 C T ABCC10 Silent p.G94G 0.17 TCGA-D7-5578-01 6 69653817 69653817 C G BAI3 Missense_Mutation p.Q376E 0.28 deleterious(0.02) possibly_damaging(0.867) TCGA-D7-5578-01 6 69666609 69666609 G A BAI3 Missense_Mutation p.R478Q 0.28 deleterious(0.01) probably_damaging(0.994) TCGA-D7-5578-01 6 88855022 88855022 A C CNR1 5'UTR 0.25 TCGA-D7-5578-01 6 90371258 90371258 T C MDN1 Missense_Mutation p.N4869D 0.30 benign(0.03) TCGA-D7-5578-01 6 90457135 90457135 G A MDN1 Missense_Mutation p.R1273C 0.22 probably_damaging(1) TCGA-D7-5578-01 7 1097720 1097720 C T GPR146 Missense_Mutation p.T190M 0.37 deleterious(0.02) benign(0) TCGA-D7-5578-01 7 110763771 110763771 G A LRRN3 Missense_Mutation p.E315K 0.16 deleterious(0) probably_damaging(1) TCGA-D7-5578-01 7 112462090 112462090 T G C7orf60 Missense_Mutation p.K309N 0.25 deleterious(0) probably_damaging(1) TCGA-D7-5578-01 7 136700588 136700588 A G CHRM2 Missense_Mutation p.R326G 0.26 tolerated(0.11) benign(0.155) TCGA-D7-5578-01 7 18630090 18630090 C A HDAC9 Silent p.G132G 0.20 TCGA-D7-5578-01 7 21639427 21639427 C A DNAH11 Missense_Mutation p.A897D 0.18 probably_damaging(0.979) TCGA-D7-5578-01 7 92826556 92826556 G T HEPACAM2 Nonsense_Mutation p.S400* 0.24 TCGA-D7-5578-01 7 94052411 94052411 C G COL1A2 Missense_Mutation p.S849C 0.32 unknown(0) TCGA-D7-5578-01 8 101092395 101092395 T C RGS22 Silent p.E102E 0.22 TCGA-D7-5578-01 8 101253380 101253380 A G SPAG1 3'UTR 0.27 TCGA-D7-5578-01 8 102504966 102504966 A T GRHL2 5'UTR 0.11 TCGA-D7-5578-01 8 104898096 104898096 T G RIMS2 Silent p.S423S 0.23 TCGA-D7-5578-01 8 104898323 104898323 A T RIMS2 Missense_Mutation p.H499L 0.15 deleterious_low_confidence(0) possibly_damaging(0.774) TCGA-D7-5578-01 8 105161047 105161047 G T RIMS2 Intron 0.14 TCGA-D7-5578-01 8 11994792 11994792 G T USP17L2 Missense_Mutation p.T493N 0.05 tolerated(0.35) benign(0) TCGA-D7-5578-01 8 121587425 121587425 A C SNTB1 Missense_Mutation p.V346G 0.10 deleterious(0) benign(0.072) TCGA-D7-5578-01 8 141381153 141381153 C T TRAPPC9 Missense_Mutation p.A519T 0.05 tolerated(0.14) benign(0.113) TCGA-D7-5578-01 8 29927339 29927339 C T TMEM66 Missense_Mutation p.M173I 0.26 tolerated(0.51) benign(0.001) TCGA-D7-5578-01 8 3432554 3432554 G A CSMD1 Silent p.S419S 0.36 TCGA-D7-5578-01 8 52370214 52370214 A C PXDNL Missense_Mutation p.L276V 0.14 tolerated(0.25) benign(0.34) TCGA-D7-5578-01 8 52384802 52384802 A C PXDNL Missense_Mutation p.F253V 0.16 deleterious(0) probably_damaging(0.982) TCGA-D7-5578-01 8 59410883 59410883 C T CYP7A1 Missense_Mutation p.V76I 0.03 tolerated(1) benign(0.052) TCGA-D7-5578-01 8 67341800 67341800 G A RRS1 Missense_Mutation p.G145D 0.16 deleterious(0) probably_damaging(1) TCGA-D7-5578-01 8 70533427 70533427 G A SULF1 Missense_Mutation p.R512H 0.40 tolerated(0.13) benign(0.022) TCGA-D7-5578-01 8 71078867 71078867 G A NCOA2 Nonsense_Mutation p.Q222* 0.18 TCGA-D7-5578-01 9 113261413 113261413 C T SVEP1 Missense_Mutation p.R530H 0.26 benign(0.002) TCGA-D7-5578-01 9 120476158 120476158 T G TLR4 Silent p.T584T 0.21 TCGA-D7-5578-01 9 125563076 125563076 C T OR1K1 Silent p.A225A 0.04 TCGA-D7-5578-01 9 130869718 130869718 C T SLC25A25 Missense_Mutation p.R503W 0.29 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-D7-5578-01 9 135205095 135205095 C T SETX Silent p.T630T 0.05 TCGA-D7-5578-01 9 140904511 140904511 C T CACNA1B Silent p.N714N 0.28 TCGA-D7-5578-01 9 67952005 67952005 G C ANKRD20A1 Missense_Mutation p.G323A 0.14 tolerated(0.11) probably_damaging(0.91) TCGA-D7-5578-01 9 8518071 8518071 T G PTPRD Missense_Mutation p.E440D 0.39 tolerated(0.07) possibly_damaging(0.578) TCGA-D7-5578-01 9 96051437 96051437 C T WNK2 Silent p.D1504D 0.19 TCGA-D7-5578-01 X 104512136 104512136 A C IL1RAPL2 Missense_Mutation p.E203D 0.49 tolerated(0.1) benign(0.06) TCGA-D7-5578-01 X 105450084 105450084 T C MUM1L1 Missense_Mutation p.V220A 0.59 tolerated(0.27) benign(0.005) TCGA-D7-5578-01 X 140985099 140985099 G T MAGEC3 Missense_Mutation p.D519Y 0.61 deleterious(0.04) possibly_damaging(0.64) TCGA-D7-5578-01 X 148039901 148039901 A C AFF2 Missense_Mutation p.K868T 0.05 deleterious(0.05) probably_damaging(0.998) TCGA-D7-5578-01 X 151820193 151820193 G A GABRQ Missense_Mutation p.R369Q 0.68 tolerated(0.28) benign(0.159) TCGA-D7-5578-01 X 19372671 19372671 G C PDHA1 Silent p.L229L 0.63 TCGA-D7-5578-01 X 63409832 63409832 T G AMER1 Missense_Mutation p.E1112A 0.53 tolerated(0.17) possibly_damaging(0.556) TCGA-D7-5578-01 X 66941796 66941796 T G AR Missense_Mutation p.F814V 0.20 deleterious(0) probably_damaging(0.934) TCGA-D7-5578-01 X 71549911 71549911 A G HDAC8 Missense_Mutation p.V376A 0.06 deleterious(0.05) benign(0.002) TCGA-D7-5578-01 X 76944359 76944359 T C ATRX Silent p.Q182Q 0.61 TCGA-D7-5578-01 X 83124879 83124879 A C CYLC1 Missense_Mutation p.K8N 0.62 tolerated(0.1) benign(0.051) TCGA-D7-5578-01 X 83129288 83129288 T C CYLC1 Silent p.F524F 0.60 TCGA-D7-5578-01 X 85950165 85950165 A T DACH2 Missense_Mutation p.N305I 0.17 tolerated(0.07) possibly_damaging(0.522) TCGA-D7-5578-01 X 92965165 92965165 A T FAM133A Nonstop_Mutation p.*249Yext*8 0.57 TCGA-D7-5579-01 10 102748498 102748498 T C C10orf2 Silent p.D177D 0.15 TCGA-D7-5579-01 10 115341635 115341635 A T HABP2 Missense_Mutation p.D280V 0.09 tolerated(0.13) benign(0.013) TCGA-D7-5579-01 10 115341702 115341702 A T HABP2 Silent p.G302G 0.09 TCGA-D7-5579-01 10 18789832 18789832 G T CACNB2 Missense_Mutation p.R183M 0.10 deleterious(0) probably_damaging(0.994) TCGA-D7-5579-01 10 18789833 18789833 G T CACNB2 Missense_Mutation p.R183S 0.12 deleterious(0) probably_damaging(0.995) TCGA-D7-5579-01 10 18795432 18795432 G T CACNB2 Missense_Mutation p.G209V 0.08 deleterious(0.01) probably_damaging(1) TCGA-D7-5579-01 10 21097588 21097588 T A NEBL Missense_Mutation p.E871V 0.11 tolerated(0.21) benign(0.376) TCGA-D7-5579-01 10 72291092 72291092 G A PALD1 Missense_Mutation p.R172H 0.13 tolerated(0.29) benign(0.031) TCGA-D7-5579-01 10 7327660 7327660 C A SFMBT2 Intron 0.25 TCGA-D7-5579-01 10 90427329 90427330 - A LIPF Frame_Shift_Ins p.M48Dfs*10 0.12 TCGA-D7-5579-01 10 95441348 95441348 C A FRA10AC1 Nonsense_Mutation p.E226* 0.18 TCGA-D7-5579-01 11 111594234 111594234 G A SIK2 Missense_Mutation p.R721Q 0.04 deleterious(0) probably_damaging(0.997) TCGA-D7-5579-01 11 113222820 113222820 C T TTC12 Missense_Mutation p.S446L 0.14 tolerated(0.05) benign(0.014) TCGA-D7-5579-01 11 123813599 123813599 A C OR6T1 Missense_Mutation p.L316R 0.11 tolerated(0.65) benign(0.005) TCGA-D7-5579-01 11 26552850 26552850 A C ANO3 Missense_Mutation p.Y279S 0.15 deleterious(0) probably_damaging(0.917) TCGA-D7-5579-01 11 404061 404061 C - PKP3 Frame_Shift_Del p.I734Sfs*66 0.21 TCGA-D7-5579-01 11 4510935 4510935 C T OR52K1 Missense_Mutation p.H269Y 0.16 deleterious(0.01) benign(0.063) TCGA-D7-5579-01 11 58978631 58978631 C T MPEG1 Missense_Mutation p.D570N 0.16 deleterious(0.04) benign(0.204) TCGA-D7-5579-01 11 60164004 60164004 G A MS4A14 5'UTR 0.24 TCGA-D7-5579-01 11 6265440 6265440 A C CNGA4 Missense_Mutation p.K510T 0.08 deleterious(0) benign(0.08) TCGA-D7-5579-01 11 70506018 70506018 A G SHANK2 Missense_Mutation p.F660S 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-D7-5579-01 12 10271125 10271125 A G CLEC7A Missense_Mutation p.S226P 0.11 deleterious(0.04) probably_damaging(0.952) TCGA-D7-5579-01 12 110943579 110943579 T A RAD9B Splice_Site p.X91_splice 0.10 TCGA-D7-5579-01 12 40745528 40745528 C T LRRK2 Missense_Mutation p.T2190I 0.09 tolerated(0.06) benign(0.003) TCGA-D7-5579-01 12 41966968 41966968 A C PDZRN4 Missense_Mutation p.K796T 0.11 tolerated(0.13) benign(0.004) TCGA-D7-5579-01 12 49168189 49168189 T C ADCY6 Missense_Mutation p.N760S 0.11 tolerated(0.14) benign(0.006) TCGA-D7-5579-01 12 50344542 50344542 A G AQP2 5'UTR 0.06 TCGA-D7-5579-01 12 54651321 54651321 T G CBX5 Silent p.L38L 0.07 TCGA-D7-5579-01 12 55420235 55420235 T G NEUROD4 Silent p.T4T 0.20 TCGA-D7-5579-01 12 55846327 55846327 T C OR6C2 Silent p.F110F 0.07 TCGA-D7-5579-01 12 56120706 56120706 C T CD63 Missense_Mutation p.A100T 0.09 tolerated(0.08) benign(0.258) TCGA-D7-5579-01 12 81719569 81719569 T G PPFIA2 Silent p.R877R 0.15 TCGA-D7-5579-01 13 40293448 40293448 G C COG6 Missense_Mutation p.A454P 0.23 deleterious(0.03) possibly_damaging(0.751) TCGA-D7-5579-01 13 46287709 46287709 C T SPERT Silent p.R183R 0.13 TCGA-D7-5579-01 14 106539268 106539268 G A IGHV1-8 Silent p.N54N 0.06 TCGA-D7-5579-01 14 20443925 20443925 T G OR4K15 Missense_Mutation p.M83R 0.20 deleterious(0) probably_damaging(0.998) TCGA-D7-5579-01 14 21840168 21840168 G A SUPT16H Silent p.I65I 0.20 TCGA-D7-5579-01 14 64443311 64443311 G A SYNE2 Missense_Mutation p.A387T 0.23 benign(0.364) TCGA-D7-5579-01 14 79117586 79117586 T G NRXN3 Missense_Mutation p.F7V 0.21 tolerated(0.13) benign(0.42) TCGA-D7-5579-01 14 95081072 95081072 G A SERPINA3 Silent p.E98E 0.32 TCGA-D7-5579-01 15 101434165 101434165 T G ALDH1A3 Missense_Mutation p.F182V 0.12 deleterious(0.03) probably_damaging(1) TCGA-D7-5579-01 15 33954944 33954945 - TGA RYR3 In_Frame_Ins p.D1742dup 0.08 TCGA-D7-5579-01 15 40675071 40675071 T G KNSTRN Missense_Mutation p.V12G 0.23 tolerated_low_confidence(0.17) benign(0.003) TCGA-D7-5579-01 15 48051998 48051998 G T SEMA6D Translation_Start_Site p.M1? 0.06 deleterious_low_confidence(0.01) benign(0.027) TCGA-D7-5579-01 15 66797765 66797765 G A RPL4 5'Flank 0.10 TCGA-D7-5579-01 15 72533830 72533830 A G PARP6 Missense_Mutation p.M620T 0.13 deleterious(0.01) benign(0.031) TCGA-D7-5579-01 15 85341579 85341579 C G ZNF592 Missense_Mutation p.F870L 0.07 deleterious(0) probably_damaging(0.994) TCGA-D7-5579-01 16 28975126 28975126 G A NFATC2IP Missense_Mutation p.R401K 0.14 tolerated(1) benign(0.002) TCGA-D7-5579-01 16 29825520 29825522 CTC - PRRT2 Intron 0.13 TCGA-D7-5579-01 16 53529186 53529186 G A AKTIP Missense_Mutation p.R101C 0.11 deleterious(0.02) possibly_damaging(0.72) TCGA-D7-5579-01 16 7568390 7568390 C G RBFOX1 Missense_Mutation p.T110R 0.13 deleterious(0) probably_damaging(0.999) TCGA-D7-5579-01 16 89349184 89349184 G A ANKRD11 Missense_Mutation p.H1256Y 0.23 probably_damaging(0.985) TCGA-D7-5579-01 17 19687104 19687104 C T ULK2 Missense_Mutation p.S789N 0.17 tolerated(0.09) possibly_damaging(0.579) TCGA-D7-5579-01 17 33749727 33749727 C G SLFN12 Silent p.V107V 0.12 TCGA-D7-5579-01 17 48244954 48244954 G A SGCA Missense_Mutation p.A57T 0.10 tolerated(1) benign(0.001) TCGA-D7-5579-01 17 67260956 67260957 - A ABCA5 Frame_Shift_Ins p.I1079Yfs*50 0.22 TCGA-D7-5579-01 17 72578366 72578366 G A CD300LD Missense_Mutation p.P155L 0.11 deleterious(0.02) benign(0.002) TCGA-D7-5579-01 17 7579312 7579312 C G TP53 Silent p.T125T 0.25 TCGA-D7-5579-01 18 10680265 10680265 T C PIEZO2 Missense_Mutation p.Q2515R 0.13 tolerated(0.43) benign(0.005) TCGA-D7-5579-01 18 31432850 31432850 G A NOL4 Nonsense_Mutation p.R625* 0.22 TCGA-D7-5579-01 19 10230359 10230359 G T EIF3G Missense_Mutation p.A13D 0.14 deleterious(0) possibly_damaging(0.863) TCGA-D7-5579-01 19 11979776 11979776 C G ZNF439 3'UTR 0.25 TCGA-D7-5579-01 19 17628610 17628610 G A PGLS Missense_Mutation p.R197Q 0.09 deleterious(0.05) benign(0.087) TCGA-D7-5579-01 19 19378459 19378459 G A TM6SF2 Missense_Mutation p.R259W 0.13 deleterious(0) probably_damaging(0.956) TCGA-D7-5579-01 19 23159255 23159255 T C ZNF728 Missense_Mutation p.K295R 0.11 tolerated(0.57) benign(0.005) TCGA-D7-5579-01 19 40827891 40827891 C A C19orf47 Silent p.L389L 0.17 TCGA-D7-5579-01 19 41063307 41063307 C T SPTBN4 Nonsense_Mutation p.Q1890* 0.08 TCGA-D7-5579-01 19 43421880 43421880 C A PSG6 Splice_Site p.X22_splice 0.10 TCGA-D7-5579-01 19 45406290 45406290 C G TOMM40 Missense_Mutation p.S317C 0.11 tolerated(0.08) benign(0.413) TCGA-D7-5579-01 19 56466423 56466423 G A NLRP8 Missense_Mutation p.M333I 0.19 tolerated(0.36) benign(0.013) TCGA-D7-5579-01 19 8976841 8976841 C T MUC16 Silent p.K14075K 0.43 TCGA-D7-5579-01 19 8976844 8976844 C T MUC16 Silent p.L14074L 0.45 TCGA-D7-5579-01 1 11596541 11596541 C T PTCHD2 Missense_Mutation p.T1326M 0.12 deleterious(0) probably_damaging(0.997) TCGA-D7-5579-01 1 11851278 11851278 A G MTHFR Missense_Mutation p.F580L 0.08 deleterious(0) probably_damaging(0.998) TCGA-D7-5579-01 1 12785715 12785715 C A AADACL3 Missense_Mutation p.L269M 0.16 deleterious(0.02) possibly_damaging(0.873) TCGA-D7-5579-01 1 13475226 13475226 A C PRAMEF18 Silent p.T301T 0.14 TCGA-D7-5579-01 1 153661701 153661701 C A NPR1 Missense_Mutation p.Q868K 0.35 tolerated(0.26) possibly_damaging(0.902) TCGA-D7-5579-01 1 155300220 155300220 C G RUSC1 Missense_Mutation p.T856S 0.07 deleterious(0.02) benign(0.217) TCGA-D7-5579-01 1 158617463 158617463 T C SPTA1 Silent p.P1254P 0.12 TCGA-D7-5579-01 1 159409696 159409696 T G OR10J1 Missense_Mutation p.L50V 0.10 tolerated(0.06) benign(0.252) TCGA-D7-5579-01 1 171956837 171956837 G C DNM3 Missense_Mutation p.D93H 0.06 deleterious(0) probably_damaging(0.974) TCGA-D7-5579-01 1 178269224 178269224 A C RASAL2 Missense_Mutation p.E143A 0.08 tolerated(0.1) possibly_damaging(0.631) TCGA-D7-5579-01 1 186038897 186038897 T C HMCN1 Missense_Mutation p.V2661A 0.31 probably_damaging(0.993) TCGA-D7-5579-01 1 201058563 201058563 C A CACNA1S Missense_Mutation p.E241D 0.27 tolerated(1) benign(0.005) TCGA-D7-5579-01 1 207135614 207135614 C T FCAMR Missense_Mutation p.G199D 0.10 deleterious(0) probably_damaging(0.997) TCGA-D7-5579-01 1 216138706 216138706 A T USH2A Missense_Mutation p.L2358H 0.20 benign(0) TCGA-D7-5579-01 1 248551739 248551739 T G OR2T6 Missense_Mutation p.F277C 0.10 deleterious(0) probably_damaging(1) TCGA-D7-5579-01 1 26584166 26584166 A G CEP85 Missense_Mutation p.S328G 0.12 tolerated(0.22) benign(0.036) TCGA-D7-5579-01 1 40705333 40705333 G A RLF Silent p.G1653G 0.37 TCGA-D7-5579-01 1 44878227 44878227 T A RNF220 Nonsense_Mutation p.L153* 0.06 TCGA-D7-5579-01 1 84650783 84650783 G T PRKACB Missense_Mutation p.D160Y 0.10 deleterious(0) probably_damaging(0.998) TCGA-D7-5579-01 1 92467670 92467670 G A BRDT Silent p.T784T 0.09 TCGA-D7-5579-01 20 16348116 16348116 G T KIF16B Missense_Mutation p.P1285Q 0.11 deleterious_low_confidence(0) benign(0.047) TCGA-D7-5579-01 20 3683946 3683946 G A SIGLEC1 Missense_Mutation p.R376W 0.08 tolerated(0.19) benign(0.009) TCGA-D7-5579-01 20 43251555 43251555 T A ADA Missense_Mutation p.K232M 0.13 deleterious(0.01) probably_damaging(0.929) TCGA-D7-5579-01 20 46254223 46254223 C T NCOA3 Nonsense_Mutation p.Q119* 0.08 TCGA-D7-5579-01 20 472990 472990 C T CSNK2A1 Missense_Mutation p.G177S 0.05 tolerated(0.05) probably_damaging(0.975) TCGA-D7-5579-01 20 57829420 57829420 A C ZNF831 Missense_Mutation p.R1552S 0.17 deleterious(0.02) benign(0.098) TCGA-D7-5579-01 21 31812843 31812843 T G KRTAP15-1 Silent p.T66T 0.19 TCGA-D7-5579-01 22 17072656 17072656 G T CCT8L2 Missense_Mutation p.S262Y 0.13 tolerated(0.12) benign(0.039) TCGA-D7-5579-01 22 20759891 20759891 C T ZNF74 Missense_Mutation p.R190C 0.18 deleterious(0.05) benign(0.27) TCGA-D7-5579-01 22 24095278 24095278 C T VPREB3 Missense_Mutation p.G53S 0.16 tolerated(0.15) benign(0.227) TCGA-D7-5579-01 22 42458845 42458845 G T NAGA Missense_Mutation p.R315S 0.08 deleterious(0.03) benign(0.012) TCGA-D7-5579-01 2 128476972 128476972 C T WDR33 Missense_Mutation p.G876D 0.11 tolerated_low_confidence(0.27) benign(0.278) TCGA-D7-5579-01 2 132021412 132021412 G A POTEE Missense_Mutation p.R795H 0.12 deleterious_low_confidence(0.02) possibly_damaging(0.839) TCGA-D7-5579-01 2 166179794 166179794 C A SCN2A Silent p.T600T 0.12 TCGA-D7-5579-01 2 168108240 168108240 A C XIRP2 Missense_Mutation p.K3446N 0.13 possibly_damaging(0.742) TCGA-D7-5579-01 2 179247957 179247957 G A OSBPL6 Missense_Mutation p.E635K 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-D7-5579-01 2 179534986 179534986 T G TTN Missense_Mutation p.K11782T 0.17 TCGA-D7-5579-01 2 179644744 179644744 T G TTN Missense_Mutation p.T1238P 0.11 TCGA-D7-5579-01 2 220379473 220379473 C T ASIC4 Silent p.I136I 0.08 TCGA-D7-5579-01 2 238274401 238274401 C T COL6A3 Silent p.T1926T 0.08 TCGA-D7-5579-01 2 241666280 241666280 C T KIF1A Missense_Mutation p.R1362Q 0.12 deleterious(0.01) possibly_damaging(0.594) TCGA-D7-5579-01 2 27293108 27293108 C A AGBL5 Missense_Mutation p.L880M 0.22 deleterious_low_confidence(0.03) benign(0.22) TCGA-D7-5579-01 2 48809617 48809617 T G STON1-GTF2A1L Missense_Mutation p.I615M 0.18 tolerated(0.87) probably_damaging(0.999) TCGA-D7-5579-01 2 97427431 97427431 T G CNNM4 Missense_Mutation p.I232S 0.10 deleterious(0) probably_damaging(0.999) TCGA-D7-5579-01 3 100494156 100494156 T G ABI3BP Missense_Mutation p.T742P 0.15 tolerated(0.19) probably_damaging(0.969) TCGA-D7-5579-01 3 101051685 101051685 T G SENP7 Missense_Mutation p.K834N 0.14 deleterious(0.01) probably_damaging(0.984) TCGA-D7-5579-01 3 101051696 101051696 T C SENP7 Missense_Mutation p.R831G 0.11 deleterious(0) probably_damaging(0.976) TCGA-D7-5579-01 3 101062680 101062680 A C SENP7 Silent p.S652S 0.11 TCGA-D7-5579-01 3 11340313 11340313 G T ATG7 Missense_Mutation p.K48N 0.07 tolerated(0.22) benign(0.001) TCGA-D7-5579-01 3 15046076 15046076 G T NR2C2 Missense_Mutation p.A29S 0.10 tolerated_low_confidence(0.19) benign(0.403) TCGA-D7-5579-01 3 15292720 15292720 T A CAPN7 Missense_Mutation p.L799M 0.13 deleterious(0) probably_damaging(0.998) TCGA-D7-5579-01 3 184045790 184045790 G A EIF4G1 Missense_Mutation p.G1325E 0.11 deleterious(0) probably_damaging(0.984) TCGA-D7-5579-01 3 32932136 32932136 C T TRIM71 Silent p.S480S 0.09 TCGA-D7-5579-01 3 37366613 37366613 A G GOLGA4 Missense_Mutation p.K1101R 0.12 benign(0.03) TCGA-D7-5579-01 3 46063301 46063301 C G XCR1 Missense_Mutation p.V47L 0.10 tolerated(0.73) benign(0.008) TCGA-D7-5579-01 3 9804849 9804849 C A CAMK1 Silent p.G88G 0.11 TCGA-D7-5579-01 4 109088797 109088797 G A LEF1 Missense_Mutation p.H43Y 0.23 tolerated(0.52) possibly_damaging(0.89) TCGA-D7-5579-01 4 155156977 155156977 G T DCHS2 Missense_Mutation p.L2488I 0.20 tolerated(0.13) possibly_damaging(0.494) TCGA-D7-5579-01 4 169108527 169108527 C A ANXA10 Nonsense_Mutation p.S306* 0.10 TCGA-D7-5579-01 4 39921961 39921961 G C PDS5A Missense_Mutation p.T238S 0.20 tolerated(0.17) benign(0.01) TCGA-D7-5579-01 4 46979471 46979471 C T GABRA4 Silent p.K150K 0.09 TCGA-D7-5579-01 4 6043885 6043885 C T JAKMIP1 Splice_Site p.X699_splice 0.23 TCGA-D7-5579-01 4 68919748 68919748 T G TMPRSS11F Missense_Mutation p.D399A 0.15 tolerated(0.08) benign(0.263) TCGA-D7-5579-01 5 160033905 160033905 T C ATP10B Silent p.G1009G 0.06 TCGA-D7-5579-01 5 176721760 176721760 G A NSD1 Missense_Mutation p.R2464H 0.14 deleterious_low_confidence(0.04) benign(0.003) TCGA-D7-5579-01 5 176941765 176941765 A G DDX41 Missense_Mutation p.L291P 0.19 tolerated(0.28) benign(0) TCGA-D7-5579-01 5 23509147 23509147 G A PRDM9 Missense_Mutation p.S2N 0.27 tolerated_low_confidence(0.16) unknown(0) TCGA-D7-5579-01 5 33637846 33637846 T C ADAMTS12 Missense_Mutation p.K575R 0.29 deleterious(0.03) possibly_damaging(0.752) TCGA-D7-5579-01 5 35921154 35921154 G A CAPSL Silent p.T23T 0.06 TCGA-D7-5579-01 5 80083395 80083395 A G MSH3 Missense_Mutation p.E816G 0.14 tolerated(0.09) benign(0.021) TCGA-D7-5579-01 5 80409671 80409671 C T RASGRF2 Missense_Mutation p.T801M 0.15 tolerated_low_confidence(0.1) benign(0.002) TCGA-D7-5579-01 5 94353092 94353092 A G MCTP1 Silent p.L273L 0.12 TCGA-D7-5579-01 5 96332176 96332176 C G LNPEP Missense_Mutation p.S497C 0.11 deleterious(0) probably_damaging(0.971) TCGA-D7-5579-01 5 98236677 98236677 G A CHD1 Missense_Mutation p.R233C 0.10 deleterious(0) probably_damaging(0.943) TCGA-D7-5579-01 6 111680134 111680134 G C REV3L Missense_Mutation p.I2321M 0.10 deleterious(0.01) probably_damaging(1) TCGA-D7-5579-01 6 152777106 152777106 T A SYNE1 Missense_Mutation p.K881M 0.18 possibly_damaging(0.738) TCGA-D7-5579-01 6 26468104 26468104 C A BTN2A1 Intron 0.09 TCGA-D7-5579-01 6 32026099 32026099 C T TNXB Missense_Mutation p.E2521K 0.30 possibly_damaging(0.469) TCGA-D7-5579-01 6 37605066 37605066 C T MDGA1 3'UTR 0.36 TCGA-D7-5579-01 6 44116537 44116537 T G TMEM63B Missense_Mutation p.L423R 0.09 deleterious(0) probably_damaging(0.988) TCGA-D7-5579-01 7 100285026 100285026 C T GIGYF1 Missense_Mutation p.R126H 0.11 deleterious(0) unknown(0) TCGA-D7-5579-01 7 100684635 100684635 C A MUC17 Missense_Mutation p.T3313N 0.12 possibly_damaging(0.535) TCGA-D7-5579-01 7 103014763 103014763 A C SLC26A5 3'UTR 0.28 TCGA-D7-5579-01 7 19184940 19184940 A G FERD3L Missense_Mutation p.F16L 0.12 tolerated(0.06) possibly_damaging(0.64) TCGA-D7-5579-01 7 42949301 42949301 A T C7orf25 Missense_Mutation p.L458H 0.11 deleterious(0) probably_damaging(1) TCGA-D7-5579-01 7 72658360 72658360 C T GTF2IRD2P1 RNA 0.17 TCGA-D7-5579-01 7 83035322 83035322 T A SEMA3E Missense_Mutation p.K289N 0.08 deleterious(0) probably_damaging(1) TCGA-D7-5579-01 8 106800943 106800943 T C ZFPM2 Intron 0.08 TCGA-D7-5579-01 8 108334272 108334272 T C ANGPT1 Silent p.Q220Q 0.22 TCGA-D7-5579-01 8 144995359 144995359 G A PLEC Missense_Mutation p.T3014M 0.07 probably_damaging(0.999) TCGA-D7-5579-01 8 19192368 19192368 A C SH2D4A Silent p.R171R 0.10 TCGA-D7-5579-01 8 19700363 19700363 G A INTS10 Silent p.S548S 0.30 TCGA-D7-5579-01 8 24358384 24358384 G T ADAM7 Missense_Mutation p.C695F 0.09 tolerated(0.14) possibly_damaging(0.8) TCGA-D7-5579-01 8 3256965 3256965 C T CSMD1 Missense_Mutation p.E785K 0.06 possibly_damaging(0.607) TCGA-D7-5579-01 8 59407090 59407090 T C CYP7A1 Silent p.A338A 0.21 TCGA-D7-5579-01 8 65509449 65509449 T G CYP7B1 Missense_Mutation p.K424T 0.07 deleterious(0.03) probably_damaging(0.988) TCGA-D7-5579-01 9 107568522 107568522 T C ABCA1 Silent p.Q1488Q 0.07 TCGA-D7-5579-01 9 119488112 119488112 G T ASTN2 Missense_Mutation p.T864N 0.22 deleterious(0) unknown(0) TCGA-D7-5579-01 9 123714914 123714914 T A C5 3'UTR 0.14 TCGA-D7-5579-01 9 127619662 127619662 A G WDR38 Missense_Mutation p.N263S 0.12 tolerated(0.73) benign(0.012) TCGA-D7-5579-01 9 35546783 35546783 C T RUSC2 Missense_Mutation p.R89W 0.07 deleterious(0.01) benign(0.006) TCGA-D7-5579-01 9 79952416 79952416 G A VPS13A Missense_Mutation p.R2114Q 0.09 deleterious(0.03) benign(0.087) TCGA-D7-5579-01 9 87482253 87482253 C T NTRK2 Missense_Mutation p.P514S 0.19 tolerated(0.37) probably_damaging(0.999) TCGA-D7-5579-01 X 114239848 114239848 C T IL13RA2 Missense_Mutation p.R343H 0.24 tolerated(0.52) benign(0) TCGA-D7-5579-01 X 132351941 132351941 A G TFDP3 Missense_Mutation p.M116T 0.19 tolerated(0.15) benign(0.08) TCGA-D7-5579-01 X 142967341 142967341 C G UBE2NL Missense_Mutation p.P47A 0.18 deleterious(0.05) benign(0.366) TCGA-D7-5579-01 X 147007109 147007115 TGTAGGT - FMR1 Frame_Shift_Del p.V53Ifs*5 0.19 TCGA-D7-5579-01 X 83357064 83357064 G T RPS6KA6 Missense_Mutation p.A586E 0.14 deleterious(0.01) possibly_damaging(0.906) TCGA-D7-6518-01 10 101124191 101124191 G A CNNM1 Silent p.E682E 0.11 TCGA-D7-6518-01 11 117307909 117307909 C T DSCAML1 Missense_Mutation p.R1610H 0.05 deleterious(0.03) benign(0.024) TCGA-D7-6518-01 11 1213383 1213383 C A MUC5AC RNA 0.03 TCGA-D7-6518-01 11 9192306 9192306 C T DENND5A Missense_Mutation p.R642H 0.05 deleterious(0) probably_damaging(0.996) TCGA-D7-6518-01 12 107209073 107209073 G T RIC8B Silent p.V244V 0.20 TCGA-D7-6518-01 12 108134886 108134886 T G PRDM4 Missense_Mutation p.E587D 0.03 tolerated(0.19) benign(0.001) TCGA-D7-6518-01 12 20769164 20769164 C T PDE3A Missense_Mutation p.R424C 0.08 deleterious(0.03) probably_damaging(1) TCGA-D7-6518-01 12 29670442 29670457 GTGTTGTAATACAGTG - TMTC1 Frame_Shift_Del p.A691Vfs*34 0.10 TCGA-D7-6518-01 12 40697868 40697868 T G LRRK2 Missense_Mutation p.L1237V 0.06 deleterious(0.01) benign(0.405) TCGA-D7-6518-01 12 57398420 57398420 T C ZBTB39 Silent p.T94T 0.14 TCGA-D7-6518-01 12 67699937 67699937 C G CAND1 Missense_Mutation p.S830C 0.15 tolerated(0.06) possibly_damaging(0.784) TCGA-D7-6518-01 13 103295620 103295620 T G TPP2 Missense_Mutation p.L690R 0.16 deleterious(0) probably_damaging(0.987) TCGA-D7-6518-01 13 31326239 31326239 C T ALOX5AP Missense_Mutation p.A74V 0.25 deleterious(0) probably_damaging(0.946) TCGA-D7-6518-01 13 41705946 41705946 C G KBTBD6 Missense_Mutation p.E234D 0.13 tolerated(0.78) benign(0.006) TCGA-D7-6518-01 13 78492238 78492238 G A EDNRB Silent p.I247I 0.09 TCGA-D7-6518-01 14 101488430 101488430 G A MIR379 RNA 0.11 TCGA-D7-6518-01 14 32902831 32902831 G - AKAP6 Frame_Shift_Del p.D45Tfs*35 0.11 TCGA-D7-6518-01 14 70712554 70712554 T G ADAM21P1 RNA 0.07 TCGA-D7-6518-01 14 71060070 71060075 GATATA - MED6 In_Frame_Del p.Y99_I100del 0.11 TCGA-D7-6518-01 14 94053116 94053116 A C UNC79 Missense_Mutation p.K788T 0.04 tolerated(0.4) benign(0.387) TCGA-D7-6518-01 15 25481277 25481277 C G SNORD115-36 RNA 0.03 TCGA-D7-6518-01 15 43656493 43656493 C T ZSCAN29 Missense_Mutation p.R437H 0.06 deleterious(0.03) probably_damaging(0.97) TCGA-D7-6518-01 15 75982987 75982987 A - CSPG4 Frame_Shift_Del p.L140Qfs*20 0.24 TCGA-D7-6518-01 15 89837116 89837116 T G FANCI Missense_Mutation p.S782A 0.12 tolerated(0.21) benign(0.011) TCGA-D7-6518-01 16 28909608 28909608 C A ATP2A1 Silent p.R534R 0.16 TCGA-D7-6518-01 16 30768315 30768315 T C PHKG2 Missense_Mutation p.L373P 0.04 deleterious(0) probably_damaging(0.999) TCGA-D7-6518-01 16 68845623 68845623 A G CDH1 Missense_Mutation p.D290G 0.06 deleterious(0) probably_damaging(1) TCGA-D7-6518-01 16 701703 701703 C T WDR90 Missense_Mutation p.R266W 0.08 tolerated(0.05) benign(0.001) TCGA-D7-6518-01 17 10219280 10219280 G A MYH13 Silent p.D1267D 0.34 TCGA-D7-6518-01 17 15604534 15604534 C T ZNF286A Missense_Mutation p.R36C 0.13 tolerated(0.19) benign(0.001) TCGA-D7-6518-01 17 32483077 32483077 G A ASIC2 Missense_Mutation p.R159C 0.29 deleterious(0) probably_damaging(1) TCGA-D7-6518-01 17 38447833 38447833 T A CDC6 Nonsense_Mutation p.C191* 0.09 TCGA-D7-6518-01 17 48776919 48776919 G A ANKRD40 Missense_Mutation p.P207S 0.27 tolerated(0.22) benign(0.177) TCGA-D7-6518-01 17 4891775 4891775 C T INCA1 Silent p.S212S 0.07 TCGA-D7-6518-01 17 7578407 7578407 G C TP53 Missense_Mutation p.R175G 0.15 deleterious(0) probably_damaging(0.985) TCGA-D7-6518-01 18 18625285 18625286 - AAA ROCK1 In_Frame_Ins p.A185_L186insF 0.13 TCGA-D7-6518-01 18 29435730 29435730 G A TRAPPC8 Missense_Mutation p.R1077W 0.33 deleterious(0) probably_damaging(0.978) TCGA-D7-6518-01 18 3456231 3456233 CTT - TGIF1 Intron 0.11 TCGA-D7-6518-01 18 65180164 65180164 G T DSEL Missense_Mutation p.S571Y 0.07 deleterious(0.02) possibly_damaging(0.898) TCGA-D7-6518-01 18 7080074 7080074 A T LAMA1 Missense_Mutation p.I82K 0.16 deleterious(0) probably_damaging(0.999) TCGA-D7-6518-01 18 74607109 74607109 G A ZNF236 Missense_Mutation p.A518T 0.10 deleterious(0) probably_damaging(0.996) TCGA-D7-6518-01 19 15063868 15063868 C T SLC1A6 Silent p.T457T 0.34 TCGA-D7-6518-01 19 23328922 23328922 A C ZNF730 Missense_Mutation p.K359T 0.13 deleterious(0.01) probably_damaging(0.934) TCGA-D7-6518-01 19 35251150 35251150 G T ZNF599 Missense_Mutation p.P186T 0.13 tolerated(0.1) benign(0.073) TCGA-D7-6518-01 19 37368633 37368633 C A ZNF345 Missense_Mutation p.L301I 0.04 deleterious(0.01) probably_damaging(0.989) TCGA-D7-6518-01 19 38126844 38126844 G T ZFP30 Missense_Mutation p.H200N 0.12 tolerated(0.15) benign(0.033) TCGA-D7-6518-01 19 40886895 40886895 G A HIPK4 Missense_Mutation p.R335C 0.06 deleterious(0) probably_damaging(1) TCGA-D7-6518-01 19 50149863 50149863 C T SCAF1 Silent p.R114R 0.20 TCGA-D7-6518-01 19 56901826 56901826 T G ZNF582 Missense_Mutation p.E18D 0.06 deleterious(0.04) probably_damaging(0.992) TCGA-D7-6518-01 19 58083815 58083815 C A ZNF416 Missense_Mutation p.R486I 0.07 deleterious(0) probably_damaging(0.935) TCGA-D7-6518-01 19 7081985 7081985 G A ZNF557 Silent p.V116V 0.12 TCGA-D7-6518-01 19 9271728 9271728 G A ZNF317 Silent p.T469T 0.08 TCGA-D7-6518-01 1 10527274 10527274 G A DFFA Silent p.I138I 0.05 TCGA-D7-6518-01 1 109793708 109793708 C T CELSR2 Missense_Mutation p.P336L 0.08 tolerated(0.13) benign(0.098) TCGA-D7-6518-01 1 114940396 114940396 G A TRIM33 Silent p.F1086F 0.06 TCGA-D7-6518-01 1 158325888 158325888 C G CD1E Missense_Mutation p.I299M 0.06 deleterious(0) benign(0.337) TCGA-D7-6518-01 1 203152776 203152776 A G CHI3L1 Missense_Mutation p.L153P 0.13 deleterious(0.01) probably_damaging(1) TCGA-D7-6518-01 1 204966334 204966334 C T NFASC Missense_Mutation p.T940M 0.13 tolerated(0.09) unknown(0) TCGA-D7-6518-01 1 220824034 220824034 G A MARK1 Missense_Mutation p.V515I 0.13 deleterious(0.02) benign(0.018) TCGA-D7-6518-01 1 232942122 232942122 G T MAP10 Missense_Mutation p.L451F 0.04 tolerated(0.13) benign(0.141) TCGA-D7-6518-01 1 236142365 236142365 C T NID1 Silent p.T1184T 0.14 TCGA-D7-6518-01 1 240256644 240256644 C T FMN2 Missense_Mutation p.P412L 0.18 unknown(0) TCGA-D7-6518-01 1 26655305 26655305 G A AIM1L Silent p.I584I 0.13 TCGA-D7-6518-01 20 13415717 13415717 G A TASP1 Missense_Mutation p.S357F 0.17 tolerated(0.07) benign(0.049) TCGA-D7-6518-01 20 31394056 31394056 C T DNMT3B Silent p.I781I 0.14 TCGA-D7-6518-01 20 34563887 34563887 G A CNBD2 Missense_Mutation p.R69Q 0.17 tolerated(0.11) benign(0.221) TCGA-D7-6518-01 20 56098150 56098150 G C CTCFL Missense_Mutation p.S243C 0.03 deleterious(0.01) possibly_damaging(0.864) TCGA-D7-6518-01 21 34399355 34399355 C T OLIG2 Missense_Mutation p.A62V 0.24 tolerated(0.13) benign(0.01) TCGA-D7-6518-01 21 47549167 47549167 C T COL6A2 Intron 0.03 TCGA-D7-6518-01 22 49042406 49042406 C T FAM19A5 Intron 0.17 TCGA-D7-6518-01 2 145274864 145274864 G T ZEB2 Silent p.A18A 0.04 TCGA-D7-6518-01 2 169791908 169791908 G A ABCB11 Missense_Mutation p.R948C 0.14 deleterious(0.01) probably_damaging(0.994) TCGA-D7-6518-01 2 214727351 214727351 A G SPAG16 Missense_Mutation p.S405G 0.05 tolerated(0.14) benign(0.006) TCGA-D7-6518-01 2 219029327 219029327 C T CXCR1 Missense_Mutation p.R203Q 0.11 deleterious(0) benign(0.076) TCGA-D7-6518-01 2 227875130 227875130 G A COL4A4 Missense_Mutation p.T1474M 0.25 unknown(0) TCGA-D7-6518-01 2 242196205 242196205 G A HDLBP Missense_Mutation p.A156V 0.19 tolerated(0.17) benign(0.016) TCGA-D7-6518-01 2 68613709 68613709 C T PLEK Missense_Mutation p.S183L 0.07 tolerated(0.31) possibly_damaging(0.622) TCGA-D7-6518-01 3 47155459 47155459 T C SETD2 Missense_Mutation p.N1541S 0.28 deleterious(0) probably_damaging(0.993) TCGA-D7-6518-01 3 49167420 49167420 G A LAMB2 Silent p.D419D 0.10 TCGA-D7-6518-01 4 189068387 189068387 G A TRIML1 Missense_Mutation p.G423E 0.22 deleterious(0.02) benign(0.388) TCGA-D7-6518-01 4 23815403 23815403 C T PPARGC1A Missense_Mutation p.R568H 0.11 deleterious_low_confidence(0.02) unknown(0) TCGA-D7-6518-01 4 47746513 47746513 C T CORIN Silent p.P235P 0.07 TCGA-D7-6518-01 4 70455255 70455255 G C UGT2A1 Missense_Mutation p.H639Q 0.19 deleterious(0) probably_damaging(0.983) TCGA-D7-6518-01 4 75246757 75246757 G T EREG Missense_Mutation p.A61S 0.11 deleterious(0.02) benign(0.373) TCGA-D7-6518-01 4 89383350 89383350 C A HERC5 Silent p.P177P 0.15 TCGA-D7-6518-01 5 131995141 131995141 G A IL13 Missense_Mutation p.S69N 0.11 tolerated(0.12) benign(0.084) TCGA-D7-6518-01 5 134044579 134044579 G T SEC24A Splice_Site p.X909_splice 0.22 TCGA-D7-6518-01 5 49699147 49699147 C A EMB Nonsense_Mutation p.E248* 0.04 TCGA-D7-6518-01 5 55407441 55407441 G T ANKRD55 Silent p.V378V 0.04 TCGA-D7-6518-01 5 65088312 65088312 G A NLN Missense_Mutation p.G453S 0.09 tolerated(0.08) possibly_damaging(0.56) TCGA-D7-6518-01 6 143095264 143095264 C T HIVEP2 Silent p.L204L 0.15 TCGA-D7-6518-01 6 170594221 170594221 A T DLL1 Missense_Mutation p.D345E 0.26 tolerated(0.06) possibly_damaging(0.648) TCGA-D7-6518-01 6 31686897 31686897 G C LY6G6C Silent p.G118G 0.17 TCGA-D7-6518-01 6 55216354 55216354 G A GFRAL Missense_Mutation p.R225H 0.21 tolerated(1) benign(0.001) TCGA-D7-6518-01 6 8430176 8430176 C A SLC35B3 Missense_Mutation p.S73I 0.18 deleterious(0.03) possibly_damaging(0.726) TCGA-D7-6518-01 7 107572693 107572693 C T LAMB1 Missense_Mutation p.A1440T 0.09 deleterious(0.04) possibly_damaging(0.657) TCGA-D7-6518-01 7 127222337 127222337 G A GCC1 Missense_Mutation p.R687W 0.07 deleterious(0) benign(0.329) TCGA-D7-6518-01 7 152346034 152346034 C T XRCC2 Missense_Mutation p.C179Y 0.03 tolerated(0.1) benign(0) TCGA-D7-6518-01 7 21784532 21784532 C A DNAH11 Nonsense_Mutation p.C2794* 0.12 TCGA-D7-6518-01 7 31735216 31735216 C T PPP1R17 Silent p.H72H 0.06 TCGA-D7-6518-01 7 4273010 4273010 C T SDK1 Missense_Mutation p.A1984V 0.04 tolerated(0.26) benign(0.002) TCGA-D7-6518-01 9 113018741 113018741 G C TXN 5'UTR 0.18 TCGA-D7-6518-01 9 125487043 125487043 G A OR1L4 Missense_Mutation p.V259I 0.18 deleterious(0.03) probably_damaging(0.998) TCGA-D7-6518-01 9 32784506 32784506 G A TMEM215 Missense_Mutation p.D109N 0.08 tolerated(0.24) possibly_damaging(0.521) TCGA-D7-6518-01 9 34976588 34976588 G A KIAA1045 Missense_Mutation p.G234R 0.13 tolerated(0.45) probably_damaging(1) TCGA-D7-6518-01 9 43625124 43625125 - T SPATA31A6 Frame_Shift_Ins p.T1188Nfs*14 0.26 TCGA-D7-6518-01 9 95004524 95004524 G C IARS Missense_Mutation p.T1030R 0.09 tolerated(0.48) benign(0.001) TCGA-D7-6518-01 X 148048538 148048538 C G AFF2 Silent p.S1044S 0.05 TCGA-D7-6518-01 X 70462830 70462830 G A ZMYM3 Silent p.L1179L 0.12 TCGA-D7-6518-01 X 90690785 90690785 C T PABPC5 Missense_Mutation p.A70V 0.22 tolerated(0.08) possibly_damaging(0.635) TCGA-D7-6518-01 X 91873417 91873417 C T PCDH11X Silent p.S1174S 0.05 TCGA-D7-6519-01 10 101979084 101979084 G C CHUK Silent p.A169A 0.31 TCGA-D7-6519-01 10 37431066 37431066 C A ANKRD30A Missense_Mutation p.P358H 0.36 tolerated(0.16) probably_damaging(0.953) TCGA-D7-6519-01 10 75290191 75290194 CTGA - USP54 Frame_Shift_Del p.V512Afs*3 0.51 TCGA-D7-6519-01 11 55681260 55681260 A T OR5W2 Missense_Mutation p.S267T 0.07 deleterious(0.02) benign(0.399) TCGA-D7-6519-01 11 56380308 56380308 G A OR5M1 Missense_Mutation p.A224V 0.42 deleterious(0) possibly_damaging(0.756) TCGA-D7-6519-01 11 56467944 56467944 C A OR9G1 Missense_Mutation p.F27L 0.14 deleterious(0.04) benign(0.32) TCGA-D7-6519-01 11 60641001 60641001 C A ZP1 Missense_Mutation p.P465H 0.40 deleterious(0.01) probably_damaging(0.998) TCGA-D7-6519-01 11 64375009 64375009 C T NRXN2 Missense_Mutation p.V1600M 0.50 deleterious_low_confidence(0.02) benign(0.029) TCGA-D7-6519-01 11 99872816 99872816 G T CNTN5 Missense_Mutation p.V310F 0.56 deleterious(0.02) benign(0.264) TCGA-D7-6519-01 12 109536126 109536126 C T UNG Intron 0.34 TCGA-D7-6519-01 12 130841471 130841471 C A PIWIL1 Nonsense_Mutation p.Y471* 0.29 TCGA-D7-6519-01 12 25222316 25222316 G T LRMP 5'UTR 0.05 TCGA-D7-6519-01 13 72440210 72440210 G T DACH1 Missense_Mutation p.T233N 0.16 probably_damaging(1) TCGA-D7-6519-01 14 60194301 60194301 C T RTN1 Silent p.S367S 0.21 TCGA-D7-6519-01 14 62207881 62207881 G A HIF1A Missense_Mutation p.V714M 0.78 tolerated(0.13) benign(0.078) TCGA-D7-6519-01 15 45444704 45444704 C T DUOX1 Silent p.I1138I 0.72 TCGA-D7-6519-01 15 88576112 88576112 G T NTRK3 Missense_Mutation p.H521N 0.34 tolerated(1) benign(0.008) TCGA-D7-6519-01 16 1510888 1510888 C T CLCN7 Missense_Mutation p.G138D 0.06 deleterious(0) possibly_damaging(0.905) TCGA-D7-6519-01 16 71894501 71894501 C T ZNF821 Missense_Mutation p.G220E 0.08 tolerated(0.62) benign(0.011) TCGA-D7-6519-01 17 1383891 1383891 T C MYO1C Missense_Mutation p.N279S 0.25 tolerated(0.2) benign(0.04) TCGA-D7-6519-01 17 14204920 14204920 G A HS3ST3B1 Missense_Mutation p.V29M 0.52 deleterious_low_confidence(0.01) probably_damaging(0.986) TCGA-D7-6519-01 17 4721623 4721623 G T PLD2 Missense_Mutation p.R651L 0.12 tolerated(0.06) benign(0.18) TCGA-D7-6519-01 17 74382134 74382134 A G SPHK1 Missense_Mutation p.K113E 0.50 deleterious(0.02) benign(0.373) TCGA-D7-6519-01 19 18966037 18966037 C T UPF1 Silent p.A510A 0.43 TCGA-D7-6519-01 19 39912813 39912813 C G PLEKHG2 Missense_Mutation p.S521C 0.22 deleterious_low_confidence(0.02) benign(0.024) TCGA-D7-6519-01 19 41847896 41847896 T G TGFB1 Missense_Mutation p.H251P 0.18 tolerated(0.21) benign(0.104) TCGA-D7-6519-01 19 49637939 49637939 A G PPFIA3 Missense_Mutation p.D474G 0.08 deleterious(0.01) probably_damaging(0.992) TCGA-D7-6519-01 19 51656357 51656357 G A SIGLEC7 Missense_Mutation p.R420Q 0.39 tolerated(0.55) benign(0.049) TCGA-D7-6519-01 19 52327718 52327734 CTTACGTGTCTTCGCTG - FPR3 Frame_Shift_Del p.L240Cfs*13 0.32 TCGA-D7-6519-01 19 55086410 55086410 C T LILRA2 Missense_Mutation p.R189C 0.47 deleterious(0.03) possibly_damaging(0.478) TCGA-D7-6519-01 1 152192589 152192589 G A HRNR Nonsense_Mutation p.R506* 0.40 TCGA-D7-6519-01 1 156909511 156909511 C T ARHGEF11 Missense_Mutation p.G1309R 0.49 tolerated_low_confidence(0.12) benign(0.037) TCGA-D7-6519-01 1 161018192 161018192 G A ARHGAP30 Silent p.D873D 0.33 TCGA-D7-6519-01 1 171162660 171162660 C A FMO2 Missense_Mutation p.Q107K 0.08 tolerated(1) benign(0.005) TCGA-D7-6519-01 1 186057138 186057138 T A HMCN1 Missense_Mutation p.N3146K 0.09 probably_damaging(0.982) TCGA-D7-6519-01 1 201023635 201023635 C T CACNA1S Missense_Mutation p.V1222I 0.14 tolerated_low_confidence(0.26) benign(0.014) TCGA-D7-6519-01 1 204429064 204429064 G C PIK3C2B Missense_Mutation p.A503G 0.19 tolerated(0.29) probably_damaging(0.996) TCGA-D7-6519-01 1 248616513 248616513 C T OR2T2 Missense_Mutation p.R139C 0.14 tolerated(0.1) benign(0.003) TCGA-D7-6519-01 1 31188944 31188944 G A MATN1 Missense_Mutation p.A340V 0.77 tolerated(0.06) possibly_damaging(0.819) TCGA-D7-6519-01 1 40033125 40033125 C A PABPC4 Intron 0.06 TCGA-D7-6519-01 20 60883474 60883474 C T ADRM1 Silent p.L355L 0.56 TCGA-D7-6519-01 2 136872386 136872386 G - CXCR4 3'UTR 0.17 TCGA-D7-6519-01 2 166802093 166802093 G A TTC21B Missense_Mutation p.H124Y 0.48 tolerated(0.33) benign(0.006) TCGA-D7-6519-01 2 200797977 200797977 G A TYW5 Missense_Mutation p.P254L 0.37 deleterious(0.03) benign(0.077) TCGA-D7-6519-01 2 207619947 207619947 C T MDH1B Silent p.R232R 0.49 TCGA-D7-6519-01 2 87013019 87013019 T C CD8A 3'UTR 0.46 TCGA-D7-6519-01 3 131197966 131197966 C G MRPL3 Intron 0.59 TCGA-D7-6519-01 3 167543114 167543114 T A SERPINI1 3'UTR 0.34 TCGA-D7-6519-01 3 56468846 56468846 G A ERC2 Silent p.L64L 0.44 TCGA-D7-6519-01 4 152023242 152023242 G A RPS3A Intron 0.62 TCGA-D7-6519-01 5 149437078 149437078 A - CSF1R Frame_Shift_Del p.F737Sfs*26 0.27 TCGA-D7-6519-01 5 154394974 154394974 C A KIF4B Missense_Mutation p.Q519K 0.34 deleterious(0.01) probably_damaging(0.967) TCGA-D7-6519-01 5 172661792 172661792 C T NKX2-5 Missense_Mutation p.D99N 0.38 tolerated(0.16) probably_damaging(0.959) TCGA-D7-6519-01 6 119228836 119228836 C G ASF1A 3'UTR 0.40 TCGA-D7-6519-01 6 26225435 26225435 G T HIST1H3E Missense_Mutation p.R18L 0.70 deleterious_low_confidence(0) possibly_damaging(0.835) TCGA-D7-6519-01 6 31124558 31124558 C T CCHCR1 Missense_Mutation p.M149I 0.67 tolerated(0.24) benign(0.149) TCGA-D7-6519-01 6 76623819 76623819 G A MYO6 Missense_Mutation p.R1160Q 0.32 tolerated(1) benign(0.014) TCGA-D7-6519-01 6 90576103 90576103 C T CASP8AP2 RNA 0.33 TCGA-D7-6519-01 7 104758271 104758271 A G SRPK2 3'UTR 0.29 TCGA-D7-6519-01 7 107053002 107053002 C T COG5 Missense_Mutation p.R236Q 0.40 tolerated(0.05) possibly_damaging(0.891) TCGA-D7-6519-01 7 37890317 37890317 G A NME8 Missense_Mutation p.E60K 0.44 deleterious(0.04) possibly_damaging(0.477) TCGA-D7-6519-01 7 42005045 42005045 G T GLI3 Missense_Mutation p.P1209H 0.41 tolerated_low_confidence(0.51) benign(0.004) TCGA-D7-6519-01 8 69002905 69002905 C T PREX2 Silent p.V735V 0.41 TCGA-D7-6519-01 8 87917328 87917328 T G CNBD1 Missense_Mutation p.L60V 0.38 tolerated(0.32) benign(0.016) TCGA-D7-6519-01 9 35853551 35853551 G A TMEM8B Missense_Mutation p.R378H 0.77 deleterious(0) probably_damaging(0.999) TCGA-D7-6519-01 X 50056925 50056925 G T CCNB3 Missense_Mutation p.V1165L 0.39 deleterious(0.01) probably_damaging(0.941) TCGA-D7-6519-01 X 54817436 54817436 T C ITIH6 Silent p.E150E 0.24 TCGA-D7-6519-01 X 6451825 6451825 C A VCX3A Silent p.L174L 0.17 TCGA-D7-6519-01 X 73524418 73524418 G A ZCCHC13 Missense_Mutation p.R106H 0.57 tolerated(1) benign(0.01) TCGA-D7-6519-01 X 7812018 7812018 G T VCX Silent p.P194P 0.11 TCGA-D7-6519-01 X 83319320 83319320 G A RPS6KA6 Missense_Mutation p.R735W 0.55 deleterious(0) probably_damaging(0.999) TCGA-D7-6520-01 10 104121522 104121522 G C GBF1 Missense_Mutation p.K512N 0.09 tolerated(0.07) benign(0.292) TCGA-D7-6520-01 10 106124545 106124545 C A CCDC147 Silent p.L165L 0.10 TCGA-D7-6520-01 10 123842259 123842259 A G TACC2 Missense_Mutation p.K82E 0.14 benign(0.06) TCGA-D7-6520-01 10 85968592 85968592 C A CDHR1 Missense_Mutation p.N425K 0.10 deleterious(0) benign(0.359) TCGA-D7-6520-01 10 90342921 90342921 G A RNLS Silent p.A9A 0.29 TCGA-D7-6520-01 11 118267178 118267178 A C UBE4A 3'UTR 0.24 TCGA-D7-6520-01 11 124739005 124739005 C T ROBO3 Silent p.N156N 0.33 TCGA-D7-6520-01 11 56954951 56954951 C A LRRC55 Silent p.I341I 0.30 TCGA-D7-6520-01 11 57573377 57573377 T A CTNND1 Silent p.L582L 0.19 TCGA-D7-6520-01 11 6007312 6007312 A G OR52L1 Silent p.G283G 0.30 TCGA-D7-6520-01 11 74800481 74800481 C T OR2AT4 Missense_Mutation p.G93E 0.28 tolerated(0.2) benign(0.062) TCGA-D7-6520-01 12 106786900 106786900 G T POLR3B Missense_Mutation p.C272F 0.31 deleterious(0.01) possibly_damaging(0.702) TCGA-D7-6520-01 12 108985737 108985737 A G TMEM119 Silent p.S141S 0.40 TCGA-D7-6520-01 12 130834487 130834487 T C PIWIL1 Missense_Mutation p.V340A 0.10 deleterious(0) benign(0.387) TCGA-D7-6520-01 12 133764473 133764473 G C ZNF268 Missense_Mutation p.E17Q 0.21 tolerated_low_confidence(0.06) probably_damaging(0.968) TCGA-D7-6520-01 12 1992095 1992095 G A CACNA2D4 Missense_Mutation p.R475C 0.34 deleterious(0) probably_damaging(1) TCGA-D7-6520-01 12 53007513 53007513 G A KRT73 Missense_Mutation p.R315W 0.27 deleterious(0.03) benign(0.003) TCGA-D7-6520-01 12 6080794 6080794 G A VWF Missense_Mutation p.R2507W 0.29 deleterious(0.01) possibly_damaging(0.876) TCGA-D7-6520-01 13 32911048 32911048 C G BRCA2 Missense_Mutation p.N852K 0.24 deleterious(0.01) possibly_damaging(0.452) TCGA-D7-6520-01 13 53016581 53016581 C G VPS36 Splice_Site p.X33_splice 0.27 TCGA-D7-6520-01 13 58208916 58208916 G A PCDH17 Missense_Mutation p.E746K 0.33 tolerated(0.17) benign(0.046) TCGA-D7-6520-01 14 24845524 24845524 C T NFATC4 Missense_Mutation p.P757L 0.26 deleterious(0.02) benign(0.378) TCGA-D7-6520-01 14 90650473 90650473 C T KCNK13 Missense_Mutation p.P118L 0.42 deleterious(0) probably_damaging(1) TCGA-D7-6520-01 15 72699483 72699483 A G TMEM202 Missense_Mutation p.R182G 0.26 tolerated(0.08) benign(0.382) TCGA-D7-6520-01 15 84245455 84245455 T G SH3GL3 Missense_Mutation p.L196V 0.17 tolerated(0.29) probably_damaging(0.989) TCGA-D7-6520-01 16 75681861 75681861 C G TERF2IP Missense_Mutation p.S27R 0.09 tolerated(0.11) benign(0.047) TCGA-D7-6520-01 17 4577819 4577819 G A PELP1 Missense_Mutation p.A523V 0.06 benign(0.061) TCGA-D7-6520-01 17 72708985 72708985 G T CD300LF Nonsense_Mutation p.Y7* 0.30 TCGA-D7-6520-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.47 tolerated(0.11) benign(0.308) TCGA-D7-6520-01 19 10077045 10077046 - A COL5A3 Frame_Shift_Ins p.C1576Lfs*18 0.56 TCGA-D7-6520-01 19 54313731 54313731 G A NLRP12 Silent p.N394N 0.38 TCGA-D7-6520-01 1 152327123 152327123 G A FLG2 Nonsense_Mutation p.Q1047* 0.17 TCGA-D7-6520-01 1 173876592 173876592 A C SERPINC1 Missense_Mutation p.L405R 0.31 deleterious(0) probably_damaging(0.995) TCGA-D7-6520-01 1 192779562 192779563 - T RGS2 Splice_Site p.X92_splice 0.30 TCGA-D7-6520-01 1 23234547 23234547 C T EPHB2 Silent p.D747D 0.32 TCGA-D7-6520-01 1 234458881 234458881 C G SLC35F3 Silent p.L455L 0.34 TCGA-D7-6520-01 1 237586400 237586400 G T RYR2 Missense_Mutation p.G286V 0.29 probably_damaging(0.973) TCGA-D7-6520-01 1 247751887 247751887 T G OR2G2 Missense_Mutation p.F76V 0.27 deleterious(0) benign(0.378) TCGA-D7-6520-01 1 248059821 248059821 A G OR2W3 Silent p.L311L 0.34 TCGA-D7-6520-01 1 76257946 76257946 T A RABGGTB Nonsense_Mutation p.C220* 0.20 TCGA-D7-6520-01 1 94964197 94964197 G A ABCD3 Missense_Mutation p.G476S 0.22 deleterious(0) probably_damaging(1) TCGA-D7-6520-01 20 44845476 44845476 C T CDH22 Missense_Mutation p.R276H 0.21 tolerated(0.07) benign(0.002) TCGA-D7-6520-01 20 45204220 45204220 C A SLC13A3 Missense_Mutation p.G442C 0.33 deleterious(0) probably_damaging(0.996) TCGA-D7-6520-01 21 43496251 43496292 AAGATGGTTTACCGGACACAGTACCTGGTAGTGGAGGTCCCC - UMODL1 In_Frame_Del p.K72_P85del 0.23 TCGA-D7-6520-01 22 38038466 38038466 T A SH3BP1 Intron 0.27 TCGA-D7-6520-01 2 163230084 163230084 C A KCNH7 Missense_Mutation p.V1074L 0.37 deleterious(0.04) possibly_damaging(0.614) TCGA-D7-6520-01 2 168108443 168108443 C G XIRP2 Missense_Mutation p.S3514C 0.25 probably_damaging(0.937) TCGA-D7-6520-01 2 179443626 179443626 C T TTN Missense_Mutation p.G22711S 0.22 TCGA-D7-6520-01 2 21225842 21225842 A G APOB Missense_Mutation p.L4151P 0.26 probably_damaging(0.998) TCGA-D7-6520-01 2 222320295 222320295 G A EPHA4 Missense_Mutation p.L563F 0.25 tolerated(0.13) probably_damaging(0.969) TCGA-D7-6520-01 2 225639637 225639637 G A DOCK10 Missense_Mutation p.R2000W 0.36 deleterious(0) probably_damaging(0.989) TCGA-D7-6520-01 2 225661722 225661722 C G DOCK10 Missense_Mutation p.E1596Q 0.29 deleterious(0) probably_damaging(0.998) TCGA-D7-6520-01 2 60679675 60679675 C T BCL11A 3'Flank 0.26 TCGA-D7-6520-01 2 70187695 70187695 G A ASPRV1 3'UTR 0.14 TCGA-D7-6520-01 3 138669507 138669507 C T C3orf72 3'UTR 0.27 TCGA-D7-6520-01 3 49405953 49405953 C T RHOA Missense_Mutation p.G62E 0.51 deleterious(0) probably_damaging(0.952) TCGA-D7-6520-01 4 26483296 26483296 C T CCKAR Silent p.S417S 0.25 TCGA-D7-6520-01 4 71255426 71255426 C T SMR3B Missense_Mutation p.P34L 0.24 deleterious_low_confidence(0) unknown(0) TCGA-D7-6520-01 5 140773983 140773983 A G PCDHGA8 Missense_Mutation p.S535G 0.40 tolerated_low_confidence(0.1) benign(0.064) TCGA-D7-6520-01 5 173376580 173376580 A G CPEB4 Missense_Mutation p.K509R 0.22 deleterious(0.03) benign(0.154) TCGA-D7-6520-01 5 175110886 175110886 A G HRH2 Missense_Mutation p.N217S 0.18 tolerated(0.68) benign(0.035) TCGA-D7-6520-01 5 74325257 74325257 T A GCNT4 Missense_Mutation p.R202S 0.37 deleterious(0) probably_damaging(1) TCGA-D7-6520-01 5 76932916 76932916 G A OTP Silent p.P59P 0.29 TCGA-D7-6520-01 6 127836184 127836184 G A SOGA3 Silent p.I370I 0.51 TCGA-D7-6520-01 6 160555103 160555103 G A SLC22A1 Missense_Mutation p.R262H 0.47 deleterious(0) probably_damaging(1) TCGA-D7-6520-01 6 22570002 22570002 C T HDGFL1 Silent p.F66F 0.44 TCGA-D7-6520-01 6 27834888 27834888 C T HIST1H1B Silent p.K140K 0.23 TCGA-D7-6520-01 6 31625241 31625241 G A APOM Missense_Mutation p.R143H 0.44 deleterious(0) probably_damaging(1) TCGA-D7-6520-01 6 31730316 31730316 T C MSH5 3'UTR 0.41 TCGA-D7-6520-01 6 49667600 49667600 C T CRISP2 Nonsense_Mutation p.W63* 0.17 TCGA-D7-6520-01 6 53706991 53706991 C T LRRC1 Silent p.F81F 0.17 TCGA-D7-6520-01 7 143701159 143701159 C T OR6B1 Missense_Mutation p.R24W 0.42 deleterious(0.02) possibly_damaging(0.487) TCGA-D7-6520-01 7 81579693 81579693 T C CACNA2D1 3'UTR 0.43 TCGA-D7-6520-01 8 125528240 125528240 A C TATDN1 Silent p.P78P 0.22 TCGA-D7-6520-01 8 32621813 32621813 C T NRG1 Missense_Mutation p.R611C 0.30 deleterious(0) probably_damaging(0.988) TCGA-D7-6520-01 8 76471222 76471222 T A HNF4G Missense_Mutation p.L348H 0.31 deleterious(0) benign(0.228) TCGA-D7-6520-01 X 132161318 132161318 G C USP26 Missense_Mutation p.Q311E 0.66 deleterious(0) probably_damaging(1) TCGA-D7-6520-01 X 32429956 32429956 G A DMD Silent p.I1382I 0.59 TCGA-D7-6520-01 X 67273626 67273626 G A OPHN1 Missense_Mutation p.R729W 0.08 deleterious_low_confidence(0.03) benign(0.014) TCGA-D7-6521-01 10 69676111 69676111 A G SIRT1 Missense_Mutation p.S669G 0.22 deleterious_low_confidence(0.05) probably_damaging(0.977) TCGA-D7-6521-01 11 110453059 110453059 C T ARHGAP20 Missense_Mutation p.R569K 0.13 tolerated(0.23) benign(0.006) TCGA-D7-6521-01 11 117389392 117389392 G A DSCAML1 Silent p.G493G 0.10 TCGA-D7-6521-01 11 130784835 130784835 C T SNX19 Missense_Mutation p.E334K 0.16 tolerated(0.07) benign(0.041) TCGA-D7-6521-01 11 14808127 14808127 G A PDE3B Missense_Mutation p.G392S 0.10 tolerated(0.25) benign(0.391) TCGA-D7-6521-01 11 35496285 35496285 G T PAMR1 Silent p.G129G 0.18 TCGA-D7-6521-01 11 70332291 70332291 G A SHANK2 Silent p.T1370T 0.06 TCGA-D7-6521-01 11 7111052 7111052 C T RBMXL2 Missense_Mutation p.S234L 0.14 tolerated(0.05) benign(0.32) TCGA-D7-6521-01 11 92430579 92430579 G C FAT3 Missense_Mutation p.D1213H 0.09 probably_damaging(1) TCGA-D7-6521-01 12 108641966 108641966 A G WSCD2 Missense_Mutation p.D515G 0.23 deleterious(0) probably_damaging(0.929) TCGA-D7-6521-01 12 113379558 113379558 C T OAS3 Missense_Mutation p.P121S 0.12 tolerated(0.91) benign(0.01) TCGA-D7-6521-01 12 49724178 49724178 C T TROAP Missense_Mutation p.P517L 0.10 tolerated_low_confidence(0.17) benign(0.078) TCGA-D7-6521-01 12 76449896 76449896 C A NAP1L1 Nonsense_Mutation p.E159* 0.14 TCGA-D7-6521-01 12 96377755 96377755 C T HAL Silent p.V407V 0.09 TCGA-D7-6521-01 13 106119489 106119489 T G DAOA Missense_Mutation p.I44M 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.506) TCGA-D7-6521-01 13 29001982 29001982 C T FLT1 Missense_Mutation p.V395I 0.08 deleterious(0) probably_damaging(0.999) TCGA-D7-6521-01 13 38211356 38211356 C T TRPC4 Missense_Mutation p.R878H 0.17 deleterious_low_confidence(0.03) possibly_damaging(0.763) TCGA-D7-6521-01 14 33684530 33684530 C A NPAS3 Silent p.R95R 0.12 TCGA-D7-6521-01 14 59113725 59113725 C T DACT1 Missense_Mutation p.T795M 0.05 tolerated(0.1) possibly_damaging(0.711) TCGA-D7-6521-01 15 43577123 43577123 C T TGM7 Missense_Mutation p.R298H 0.16 deleterious(0.01) probably_damaging(0.99) TCGA-D7-6521-01 15 74912538 74912538 G A CLK3 Missense_Mutation p.R262H 0.09 tolerated(0.06) possibly_damaging(0.869) TCGA-D7-6521-01 16 67762350 67762350 G A RANBP10 Missense_Mutation p.R473C 0.06 tolerated(0.05) possibly_damaging(0.908) TCGA-D7-6521-01 16 68056517 68056517 C G DDX28 Missense_Mutation p.D197H 0.28 tolerated(0.13) benign(0.006) TCGA-D7-6521-01 17 10408543 10408543 C T MYH1 Missense_Mutation p.R791Q 0.15 tolerated(0.12) benign(0.252) TCGA-D7-6521-01 17 15890590 15890590 C T ZSWIM7 Missense_Mutation p.R64H 0.11 tolerated(0.24) benign(0.002) TCGA-D7-6521-01 17 18882956 18882956 C T FAM83G Missense_Mutation p.E241K 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-D7-6521-01 17 45009523 45009523 G A GOSR2 Silent p.E98E 0.03 TCGA-D7-6521-01 17 53042077 53042077 G A COX11 Missense_Mutation p.P168L 0.04 deleterious(0) probably_damaging(0.986) TCGA-D7-6521-01 17 73627718 73627718 G A RECQL5 Silent p.F420F 0.15 TCGA-D7-6521-01 17 7578526 7578526 C T TP53 Missense_Mutation p.C135Y 0.20 deleterious(0) probably_damaging(1) TCGA-D7-6521-01 17 78013951 78013951 C T CCDC40 Missense_Mutation p.A145V 0.12 tolerated(0.17) benign(0.014) TCGA-D7-6521-01 18 76752182 76752182 C A SALL3 Missense_Mutation p.A64E 0.50 deleterious(0) unknown(0) TCGA-D7-6521-01 19 18092786 18092786 C T KCNN1 Missense_Mutation p.S256L 0.19 deleterious(0) benign(0.301) TCGA-D7-6521-01 19 23844925 23844925 C T ZNF675 Missense_Mutation p.E73K 0.09 tolerated(1) benign(0) TCGA-D7-6521-01 19 36363501 36363501 C T APLP1 Missense_Mutation p.R323C 0.10 tolerated(0.1) probably_damaging(0.998) TCGA-D7-6521-01 19 58640848 58640850 CGA - ZNF329 In_Frame_Del p.R8del 0.27 TCGA-D7-6521-01 1 104114275 104114275 T A AMY2B Nonsense_Mutation p.Y17* 0.11 TCGA-D7-6521-01 1 167871064 167871064 C T ADCY10 Intron 0.54 TCGA-D7-6521-01 1 200967659 200967659 C T KIF21B Missense_Mutation p.E644K 0.21 tolerated(0.13) probably_damaging(0.986) TCGA-D7-6521-01 1 228566460 228566460 G T OBSCN Silent p.L8912L 0.09 TCGA-D7-6521-01 1 248458186 248458186 C T OR2T12 Missense_Mutation p.R232H 0.60 tolerated(0.06) benign(0.117) TCGA-D7-6521-01 1 27056214 27056214 C T ARID1A Nonsense_Mutation p.Q404* 0.41 TCGA-D7-6521-01 1 33764671 33764671 C A ZNF362 3'UTR 0.36 TCGA-D7-6521-01 1 45288225 45288225 G A PTCH2 Silent p.T1158T 0.35 TCGA-D7-6521-01 20 10626625 10626625 C T JAG1 Missense_Mutation p.E665K 0.09 deleterious(0.02) benign(0.214) TCGA-D7-6521-01 20 20144800 20144800 G A C20orf26 Missense_Mutation p.R378H 0.27 tolerated(0.41) benign(0.016) TCGA-D7-6521-01 20 3146981 3146981 G A LZTS3 Missense_Mutation p.S162L 0.15 deleterious(0) possibly_damaging(0.885) TCGA-D7-6521-01 20 31644485 31644485 G A BPIFB3 Missense_Mutation p.V88I 0.23 tolerated(0.25) benign(0.034) TCGA-D7-6521-01 20 52773733 52773733 C T CYP24A1 Silent p.A510A 0.10 TCGA-D7-6521-01 21 34399178 34399178 C T OLIG2 Missense_Mutation p.S3L 0.07 deleterious_low_confidence(0) possibly_damaging(0.823) TCGA-D7-6521-01 21 47918652 47918652 G A DIP2A Silent p.P187P 0.07 TCGA-D7-6521-01 22 21224688 21224688 G A SNAP29 Missense_Mutation p.D101N 0.08 deleterious(0.01) probably_damaging(0.994) TCGA-D7-6521-01 22 39262882 39262882 C T CBX6 Missense_Mutation p.G191R 0.30 deleterious(0) benign(0.093) TCGA-D7-6521-01 2 131976323 131976323 G C POTEE Missense_Mutation p.K116N 0.22 tolerated_low_confidence(1) benign(0) TCGA-D7-6521-01 2 131976365 131976365 G T POTEE Missense_Mutation p.E130D 0.16 tolerated_low_confidence(0.08) benign(0.217) TCGA-D7-6521-01 2 158167802 158167802 C T GALNT5 Missense_Mutation p.A922V 0.07 tolerated(0.19) benign(0.006) TCGA-D7-6521-01 2 197987478 197987478 C T ANKRD44 Missense_Mutation p.A197T 0.15 deleterious(0.01) probably_damaging(0.981) TCGA-D7-6521-01 2 20990056 20990056 G A C2orf43 Missense_Mutation p.A86V 0.05 tolerated(0.61) benign(0.004) TCGA-D7-6521-01 2 43452831 43452832 - C ZFP36L2 Frame_Shift_Ins p.T38Dfs*46 0.20 TCGA-D7-6521-01 3 112998786 112998786 C T BOC Silent p.P712P 0.28 TCGA-D7-6521-01 3 11880697 11880697 G A TAMM41 Missense_Mutation p.P137L 0.05 deleterious(0) probably_damaging(1) TCGA-D7-6521-01 3 173322317 173322317 C A NLGN1 5'UTR 0.22 TCGA-D7-6521-01 3 180397169 180397169 G A CCDC39 5'UTR 0.10 TCGA-D7-6521-01 3 185335332 185335332 C T SENP2 Missense_Mutation p.A392V 0.14 deleterious(0) benign(0.44) TCGA-D7-6521-01 3 49405963 49405963 C A RHOA Missense_Mutation p.D59Y 0.16 deleterious(0) probably_damaging(1) TCGA-D7-6521-01 3 49412898 49412898 T G RHOA Missense_Mutation p.Y42S 0.13 deleterious(0.01) possibly_damaging(0.527) TCGA-D7-6521-01 3 58923454 58923454 A G C3orf67 5'UTR 0.20 TCGA-D7-6521-01 4 111398070 111398070 A C ENPEP Missense_Mutation p.E167A 0.13 deleterious(0) probably_damaging(0.981) TCGA-D7-6521-01 4 56448359 56448359 C T PDCL2 Missense_Mutation p.G18S 0.11 deleterious(0) probably_damaging(1) TCGA-D7-6521-01 5 13885264 13885264 C T DNAH5 Silent p.T939T 0.22 TCGA-D7-6521-01 5 140481829 140481829 C T PCDHB3 Silent p.G532G 0.12 TCGA-D7-6521-01 5 140554097 140554097 G A PCDHB7 Missense_Mutation p.V561M 0.07 deleterious_low_confidence(0) possibly_damaging(0.834) TCGA-D7-6521-01 6 129823901 129823901 C A LAMA2 Missense_Mutation p.T2781N 0.24 tolerated(0.23) benign(0.006) TCGA-D7-6521-01 6 151670244 151670244 G A AKAP12 Missense_Mutation p.E240K 0.21 tolerated(0.06) benign(0.07) TCGA-D7-6521-01 6 1961067 1961067 C T GMDS Missense_Mutation p.G160E 0.05 deleterious_low_confidence(0) probably_damaging(1) TCGA-D7-6521-01 6 26017492 26017492 T C HIST1H1A Missense_Mutation p.K157E 0.10 tolerated(0.07) unknown(0) TCGA-D7-6521-01 7 131878892 131878892 A G PLXNA4 Missense_Mutation p.F929L 0.10 tolerated(0.71) benign(0.079) TCGA-D7-6521-01 7 142569461 142569461 C T TRPV6 Silent p.%3D 0.07 TCGA-D7-6521-01 7 55211010 55211010 G A EGFR Missense_Mutation p.V85M 0.07 deleterious(0) probably_damaging(1) TCGA-D7-6521-01 7 57187764 57187764 G A ZNF479 Missense_Mutation p.T453I 0.10 tolerated(0.12) benign(0.025) TCGA-D7-6521-01 7 76126705 76126705 G A DTX2 Missense_Mutation p.R354H 0.19 tolerated(0.07) benign(0.002) TCGA-D7-6521-01 8 55539912 55539912 C T RP1 Missense_Mutation p.S1157F 0.16 deleterious(0.02) possibly_damaging(0.907) TCGA-D7-6521-01 8 93004103 93004103 C T RUNX1T1 Missense_Mutation p.G263D 0.12 deleterious(0.01) possibly_damaging(0.703) TCGA-D7-6521-01 9 136444287 136444287 G C FAM163B Missense_Mutation p.R120G 0.22 deleterious(0) possibly_damaging(0.856) TCGA-D7-6521-01 9 32630240 32630240 C T TAF1L Missense_Mutation p.E1780K 0.15 tolerated_low_confidence(0.15) benign(0.426) TCGA-D7-6521-01 9 71002420 71002420 C T PGM5 Missense_Mutation p.R205W 0.22 deleterious(0.01) probably_damaging(0.996) TCGA-D7-6521-01 X 154197692 154197692 G A F8 Missense_Mutation p.S308L 0.27 deleterious(0) probably_damaging(0.995) TCGA-D7-6521-01 X 22263519 22263519 C T PHEX Nonsense_Mutation p.Q714* 0.07 TCGA-D7-6521-01 X 31792190 31792190 G A DMD Missense_Mutation p.R2477W 0.61 benign(0.082) TCGA-D7-6521-01 X 75004703 75004703 C A MAGEE2 Missense_Mutation p.V62F 0.30 tolerated(0.12) benign(0.042) TCGA-D7-6522-01 10 1053033 1053033 C T GTPBP4 Silent p.L360L 0.09 TCGA-D7-6522-01 10 54041923 54041923 G C PRKG1 Missense_Mutation p.G519A 0.06 deleterious(0) probably_damaging(1) TCGA-D7-6522-01 10 60588555 60588555 G A BICC1 Silent p.S943S 0.09 TCGA-D7-6522-01 11 124794667 124794667 G A HEPACAM Silent p.D128D 0.05 TCGA-D7-6522-01 11 56128624 56128624 C A OR8J1 Missense_Mutation p.A301D 0.06 deleterious(0) possibly_damaging(0.883) TCGA-D7-6522-01 12 124171418 124171418 G T TCTN2 Silent p.R200R 0.11 TCGA-D7-6522-01 12 21531349 21531349 T A IAPP Missense_Mutation p.L87M 0.04 deleterious(0.02) possibly_damaging(0.831) TCGA-D7-6522-01 12 41946487 41946487 A C PDZRN4 Missense_Mutation p.Q411H 0.04 deleterious(0.04) probably_damaging(0.999) TCGA-D7-6522-01 12 4553300 4553300 G A FGF6 Missense_Mutation p.T150M 0.13 deleterious(0) probably_damaging(0.999) TCGA-D7-6522-01 12 77417916 77417916 G A E2F7 Missense_Mutation p.T872M 0.13 deleterious(0.03) benign(0.066) TCGA-D7-6522-01 13 32760399 32760399 C G FRY Missense_Mutation p.H1108D 0.05 tolerated(0.28) benign(0.012) TCGA-D7-6522-01 14 72976881 72976881 C T RGS6 Nonsense_Mutation p.R329* 0.04 TCGA-D7-6522-01 15 89382268 89382268 G A ACAN Missense_Mutation p.V149M 0.09 tolerated(0.08) unknown(0) TCGA-D7-6522-01 16 20563552 20563552 A G ACSM2B Silent p.L270L 0.03 TCGA-D7-6522-01 16 27472881 27472881 G T GTF3C1 Silent p.G2040G 0.08 TCGA-D7-6522-01 16 48594664 48594664 C T N4BP1 Splice_Site p.X630_splice 0.05 TCGA-D7-6522-01 16 68847399 68847399 G T CDH1 Splice_Site p.X440_splice 0.05 TCGA-D7-6522-01 17 42992568 42992568 G A GFAP Missense_Mutation p.A96V 0.05 tolerated(0.65) benign(0.006) TCGA-D7-6522-01 17 4717978 4717978 G A PLD2 Missense_Mutation p.R382K 0.06 deleterious(0.01) probably_damaging(0.967) TCGA-D7-6522-01 17 73723521 73723521 C T ITGB4 Silent p.L67L 0.07 TCGA-D7-6522-01 18 30092593 30092593 G A WBP11P1 RNA 0.04 TCGA-D7-6522-01 18 30349740 30349740 G A KLHL14 Missense_Mutation p.P272L 0.05 tolerated(0.1) probably_damaging(0.925) TCGA-D7-6522-01 18 61654618 61654618 C T SERPINB8 3'UTR 0.09 TCGA-D7-6522-01 19 19646380 19646380 G A YJEFN3 Missense_Mutation p.V196I 0.09 tolerated(0.86) benign(0.136) TCGA-D7-6522-01 19 22939932 22939932 T G ZNF99 3'Flank 0.03 TCGA-D7-6522-01 19 6904148 6904148 C A EMR1 Missense_Mutation p.P302T 0.04 tolerated(0.07) probably_damaging(0.969) TCGA-D7-6522-01 1 150256881 150256881 G A C1orf51 Missense_Mutation p.R163H 0.08 deleterious(0) probably_damaging(0.999) TCGA-D7-6522-01 1 157737336 157737336 G A FCRL2 Intron 0.06 TCGA-D7-6522-01 1 185956605 185956606 - TT HMCN1 Frame_Shift_Ins p.E994Lfs*6 0.09 TCGA-D7-6522-01 1 235629002 235629002 G A B3GALNT2 Silent p.F264F 0.03 TCGA-D7-6522-01 1 247875986 247875986 C A OR6F1 Missense_Mutation p.Q24H 0.04 tolerated(0.11) benign(0.027) TCGA-D7-6522-01 1 248402739 248402739 G T OR2M4 Missense_Mutation p.S170I 0.03 deleterious(0) possibly_damaging(0.482) TCGA-D7-6522-01 21 33068535 33068535 C T SCAF4 Splice_Site p.X320_splice 0.04 TCGA-D7-6522-01 21 33825767 33825767 C T EVA1C Missense_Mutation p.A103V 0.08 tolerated(0.29) benign(0.008) TCGA-D7-6522-01 22 51237177 51237177 G A RPL23AP82 RNA 0.05 TCGA-D7-6522-01 2 33748980 33748980 G T RASGRP3 Missense_Mutation p.C184F 0.04 deleterious(0) possibly_damaging(0.55) TCGA-D7-6522-01 2 71744167 71744167 C T DYSF Missense_Mutation p.R334W 0.05 deleterious(0) probably_damaging(0.944) TCGA-D7-6522-01 2 80101439 80101439 G A CTNNA2 Missense_Mutation p.E275K 0.06 tolerated(0.21) benign(0.313) TCGA-D7-6522-01 2 89416981 89416981 C T IGKV1-17 Missense_Mutation p.R68H 0.06 deleterious(0.02) benign(0.005) TCGA-D7-6522-01 3 133098617 133098617 T C TMEM108 Missense_Mutation p.L21P 0.04 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-D7-6522-01 3 15686531 15686531 G T BTD Missense_Mutation p.A390S 0.05 tolerated(0.34) benign(0.009) TCGA-D7-6522-01 3 30715667 30715667 T C TGFBR2 Missense_Mutation p.F467S 0.07 deleterious(0) probably_damaging(0.999) TCGA-D7-6522-01 3 49412898 49412898 T C RHOA Missense_Mutation p.Y42C 0.04 deleterious(0.01) benign(0.327) TCGA-D7-6522-01 4 155506853 155506853 A C FGA Silent p.S576S 0.06 TCGA-D7-6522-01 4 57181091 57181091 G A KIAA1211 Missense_Mutation p.D475N 0.09 tolerated(0.07) possibly_damaging(0.741) TCGA-D7-6522-01 5 129521520 129521520 A T CHSY3 3'UTR 0.10 TCGA-D7-6522-01 5 140474440 140474440 G T PCDHB2 Missense_Mutation p.L22F 0.06 tolerated_low_confidence(0.43) benign(0.003) TCGA-D7-6522-01 5 5242289 5242289 G A ADAMTS16 Missense_Mutation p.V883M 0.07 deleterious(0.04) possibly_damaging(0.466) TCGA-D7-6522-01 6 152563476 152563476 G T SYNE1 Missense_Mutation p.L6598M 0.07 possibly_damaging(0.897) TCGA-D7-6522-01 6 30228380 30228380 C T HCG17 Intron 0.06 TCGA-D7-6522-01 6 4087935 4087935 C T C6orf201 Silent p.R20R 0.04 TCGA-D7-6522-01 7 121652018 121652018 A C PTPRZ1 Missense_Mutation p.K973T 0.04 deleterious_low_confidence(0.04) benign(0.034) TCGA-D7-6522-01 7 42011956 42011956 C T GLI3 Missense_Mutation p.V695I 0.06 tolerated(1) benign(0.053) TCGA-D7-6522-01 7 87564386 87564386 T C ADAM22 Missense_Mutation p.F44S 0.04 deleterious_low_confidence(0.04) benign(0.063) TCGA-D7-6522-01 8 104384809 104384809 C T CTHRC1 Intron 0.10 TCGA-D7-6522-01 8 1513926 1513926 G C DLGAP2 Silent p.G356G 0.16 TCGA-D7-6522-01 8 22037329 22037329 T C BMP1 Silent p.L316L 0.09 TCGA-D7-6522-01 X 107431078 107431078 C T COL4A6 Silent p.P590P 0.05 TCGA-D7-6522-01 X 117895118 117895118 C T IL13RA1 Missense_Mutation p.H232Y 0.08 tolerated(0.1) benign(0.135) TCGA-D7-6522-01 X 11793170 11793170 G A MSL3 Missense_Mutation p.S513N 0.09 tolerated_low_confidence(0.07) benign(0.189) TCGA-D7-6522-01 X 134989523 134989523 C T SAGE1 Missense_Mutation p.P310L 0.07 deleterious(0.02) benign(0.083) TCGA-D7-6522-01 X 135310825 135310825 C A MAP7D3 Nonsense_Mutation p.E615* 0.10 TCGA-D7-6522-01 X 140983168 140983168 C T MAGEC3 Silent p.S341S 0.12 TCGA-D7-6522-01 X 30254217 30254217 G A MAGEB3 Missense_Mutation p.R59H 0.18 tolerated(0.61) benign(0.004) TCGA-D7-6522-01 X 54161998 54161998 C T FAM120C Missense_Mutation p.R433Q 0.15 tolerated(0.6) benign(0.005) TCGA-D7-6522-01 X 75650723 75650723 A G MAGEE1 Silent p.T800T 0.08 TCGA-D7-6522-01 X 77912593 77912593 C T ZCCHC5 Missense_Mutation p.G442D 0.11 tolerated(0.08) benign(0.017) TCGA-D7-6524-01 10 104184490 104184490 G T CUEDC2 Nonsense_Mutation p.S45* 0.06 TCGA-D7-6524-01 10 126715832 126715832 C T CTBP2 Missense_Mutation p.R166Q 0.08 tolerated_low_confidence(0.09) benign(0.002) TCGA-D7-6524-01 10 55569287 55569287 T A PCDH15 Nonsense_Mutation p.K1525* 0.09 TCGA-D7-6524-01 10 74767978 74767978 T G P4HA1 3'UTR 0.07 TCGA-D7-6524-01 10 75206306 75206306 G T PPP3CB Silent p.I405I 0.12 TCGA-D7-6524-01 11 103797732 103797732 C A PDGFD Missense_Mutation p.V299L 0.05 deleterious(0) possibly_damaging(0.826) TCGA-D7-6524-01 11 121028582 121028582 G A TECTA Silent p.T1446T 0.10 TCGA-D7-6524-01 11 133801565 133801565 C A IGSF9B Silent p.A412A 0.12 TCGA-D7-6524-01 11 134062600 134062600 C T NCAPD3 Missense_Mutation p.E677K 0.15 deleterious(0.04) benign(0.298) TCGA-D7-6524-01 11 49974543 49974543 C A OR4C13 Missense_Mutation p.T190N 0.12 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-D7-6524-01 11 5443929 5443929 C T OR51Q1 Nonsense_Mutation p.R167* 0.10 TCGA-D7-6524-01 11 6478559 6478559 G A TRIM3 Silent p.S221S 0.11 TCGA-D7-6524-01 11 65374207 65374207 C T MAP3K11 Missense_Mutation p.G520R 0.16 tolerated(0.05) probably_damaging(0.996) TCGA-D7-6524-01 11 67287547 67287547 C T CABP2 Missense_Mutation p.R155Q 0.09 tolerated(0.15) benign(0.004) TCGA-D7-6524-01 11 68560791 68560791 T C CPT1A Missense_Mutation p.E320G 0.18 tolerated(0.47) benign(0.442) TCGA-D7-6524-01 11 89424640 89424640 T A FOLH1B RNA 0.14 TCGA-D7-6524-01 11 93796676 93796676 G T HEPHL1 Missense_Mutation p.A140S 0.21 tolerated(0.26) probably_damaging(1) TCGA-D7-6524-01 12 106897897 106897897 G A POLR3B Missense_Mutation p.R1046H 0.15 deleterious(0) probably_damaging(1) TCGA-D7-6524-01 12 109723285 109723285 C T FOXN4 Missense_Mutation p.R242Q 0.07 deleterious(0) probably_damaging(1) TCGA-D7-6524-01 12 109872885 109872885 G A MYO1H Missense_Mutation p.E687K 0.13 deleterious(0) possibly_damaging(0.836) TCGA-D7-6524-01 12 133358998 133358998 C T GOLGA3 Missense_Mutation p.E1117K 0.12 deleterious(0) probably_damaging(0.999) TCGA-D7-6524-01 12 43750286 43750286 C T ADAMTS20 Splice_Site p.X1881_splice 0.29 TCGA-D7-6524-01 12 52682158 52682158 C T KRT81 Missense_Mutation p.R241Q 0.11 tolerated(0.56) benign(0.015) TCGA-D7-6524-01 12 53002086 53002086 C A KRT73 Missense_Mutation p.S506I 0.15 deleterious_low_confidence(0.03) benign(0.004) TCGA-D7-6524-01 12 8376676 8376676 G A FAM90A1 Missense_Mutation p.P87S 0.13 tolerated(0.69) probably_damaging(0.948) TCGA-D7-6524-01 13 100622658 100622658 C T ZIC5 Silent p.P424P 0.42 TCGA-D7-6524-01 13 38266344 38266344 G T TRPC4 Silent p.V342V 0.09 TCGA-D7-6524-01 13 84454165 84454165 C G SLITRK1 Missense_Mutation p.G493A 0.10 deleterious(0.01) possibly_damaging(0.833) TCGA-D7-6524-01 13 86370028 86370028 G A SLITRK6 Missense_Mutation p.H206Y 0.17 deleterious(0) probably_damaging(0.997) TCGA-D7-6524-01 14 52478332 52478332 G A NID2 Missense_Mutation p.R1164W 0.13 deleterious(0) probably_damaging(0.999) TCGA-D7-6524-01 14 62567184 62567184 G A SYT16 Missense_Mutation p.R566H 0.22 deleterious(0) probably_damaging(0.999) TCGA-D7-6524-01 14 64723960 64723960 C A ESR2 Missense_Mutation p.D359Y 0.17 deleterious(0.02) probably_damaging(0.963) TCGA-D7-6524-01 14 74976494 74976494 C T LTBP2 Missense_Mutation p.A1074T 0.12 tolerated(1) benign(0.003) TCGA-D7-6524-01 15 42164501 42164501 G A SPTBN5 Missense_Mutation p.R1722W 0.14 probably_damaging(1) TCGA-D7-6524-01 16 2096147 2096147 G C NTHL1 Missense_Mutation p.D120E 0.14 tolerated(0.09) benign(0.17) TCGA-D7-6524-01 16 2510643 2510646 GCTT CTA C16orf59 Frame_Shift_Del p.A49Lfs*2 0.21 TCGA-D7-6524-01 16 30964856 30964856 G T ORAI3 Silent p.V193V 0.11 TCGA-D7-6524-01 16 46943744 46943744 C T GPT2 Missense_Mutation p.A242V 0.06 deleterious(0) possibly_damaging(0.731) TCGA-D7-6524-01 16 50830292 50830292 A G CYLD Missense_Mutation p.Y915C 0.09 deleterious(0) probably_damaging(0.998) TCGA-D7-6524-01 16 68293500 68293500 C T PLA2G15 Silent p.I393I 0.16 TCGA-D7-6524-01 16 69418513 69418513 G A TERF2 Silent p.V150V 0.17 TCGA-D7-6524-01 16 69418514 69418514 A T TERF2 Missense_Mutation p.V150D 0.16 deleterious(0) probably_damaging(0.909) TCGA-D7-6524-01 16 84270705 84270705 G A KCNG4 Silent p.A129A 0.07 TCGA-D7-6524-01 17 18420672 18420672 G A CTD-2303H24.2 RNA 0.18 TCGA-D7-6524-01 17 27380077 27380077 C T PIPOX Missense_Mutation p.P135S 0.21 tolerated(0.32) benign(0.103) TCGA-D7-6524-01 17 4805140 4805140 C T C17orf107 3'UTR 0.17 TCGA-D7-6524-01 17 7077074 7077074 G A ASGR1 Silent p.D260D 0.15 TCGA-D7-6524-01 17 7404941 7404941 G A POLR2A Missense_Mutation p.A748T 0.17 probably_damaging(0.99) TCGA-D7-6524-01 17 74261636 74261636 T C UBALD2 Missense_Mutation p.F17S 0.10 deleterious(0) probably_damaging(0.997) TCGA-D7-6524-01 17 8647479 8647479 G A CCDC42 Missense_Mutation p.A36V 0.18 tolerated(0.06) benign(0.02) TCGA-D7-6524-01 18 25572744 25572744 C T CDH2 Missense_Mutation p.D407N 0.14 deleterious(0) probably_damaging(1) TCGA-D7-6524-01 19 12059220 12059220 C T ZNF700 Silent p.D127D 0.13 TCGA-D7-6524-01 19 19655192 19655192 G A CILP2 Missense_Mutation p.R613Q 0.13 deleterious(0) probably_damaging(0.999) TCGA-D7-6524-01 19 40368334 40368334 G A FCGBP Silent p.V4338V 0.05 TCGA-D7-6524-01 19 45535866 45535866 C A RELB Missense_Mutation p.Q356K 0.20 deleterious(0) probably_damaging(0.992) TCGA-D7-6524-01 19 54800025 54800025 G A LILRA3 3'UTR 0.15 TCGA-D7-6524-01 1 145474330 145474330 C T ANKRD34A Silent p.S334S 0.18 TCGA-D7-6524-01 1 152128681 152128681 C T RPTN Silent p.T298T 0.13 TCGA-D7-6524-01 1 158623143 158623143 C T SPTA1 Missense_Mutation p.D1037N 0.14 tolerated(0.08) probably_damaging(0.998) TCGA-D7-6524-01 1 177199156 177199156 C T BRINP2 Silent p.S48S 0.12 TCGA-D7-6524-01 1 228333243 228333243 C T GUK1 Silent p.S31S 0.19 TCGA-D7-6524-01 1 22924249 22924249 G T EPHA8 Missense_Mutation p.A671S 0.13 tolerated(0.21) benign(0.014) TCGA-D7-6524-01 1 23637402 23637402 G A HNRNPR Missense_Mutation p.R486C 0.16 tolerated(0.21) unknown(0) TCGA-D7-6524-01 1 26898396 26898396 G T RPS6KA1 Silent p.L612L 0.22 TCGA-D7-6524-01 1 27107151 27107151 C A ARID1A Nonsense_Mutation p.Y2254* 0.23 TCGA-D7-6524-01 1 39877622 39877622 G A KIAA0754 Missense_Mutation p.R426K 0.14 benign(0.001) TCGA-D7-6524-01 1 46782256 46782256 A G UQCRH Silent p.%3D 0.09 TCGA-D7-6524-01 1 72058615 72058615 A C NEGR1 Missense_Mutation p.N275K 0.16 deleterious(0.01) possibly_damaging(0.825) TCGA-D7-6524-01 1 74836071 74836071 G T FPGT-TNNI3K Missense_Mutation p.L703F 0.09 deleterious(0) probably_damaging(0.999) TCGA-D7-6524-01 1 75037596 75037596 G A C1orf173 Silent p.V1266V 0.14 TCGA-D7-6524-01 1 89236101 89236101 C T PKN2 Nonsense_Mutation p.R191* 0.15 TCGA-D7-6524-01 1 89237394 89237395 - ATTC PKN2 Frame_Shift_Ins p.L275Ffs*21 0.11 TCGA-D7-6524-01 20 2945695 2945695 A G PTPRA Missense_Mutation p.T88A 0.09 tolerated_low_confidence(0.13) benign(0.079) TCGA-D7-6524-01 20 52583468 52583468 G T BCAS1 Missense_Mutation p.L443M 0.08 deleterious(0) probably_damaging(0.988) TCGA-D7-6524-01 21 40608631 40608631 G A BRWD1 Nonsense_Mutation p.R886* 0.13 TCGA-D7-6524-01 22 40803534 40803534 G C SGSM3 Missense_Mutation p.D496H 0.14 deleterious(0) probably_damaging(0.994) TCGA-D7-6524-01 2 159028732 159028732 G A CCDC148 Nonsense_Mutation p.R557* 0.10 TCGA-D7-6524-01 2 1643087 1643087 G A PXDN Missense_Mutation p.R1354W 0.19 deleterious(0.01) benign(0.258) TCGA-D7-6524-01 2 170063685 170063685 C T LRP2 Missense_Mutation p.R2182H 0.19 benign(0.049) TCGA-D7-6524-01 2 175618085 175618085 C T CHRNA1 Intron 0.15 TCGA-D7-6524-01 2 179613044 179613044 C A TTN Intron 0.12 TCGA-D7-6524-01 2 203420137 203420137 C A BMPR2 Missense_Mutation p.N583K 0.09 deleterious(0.03) possibly_damaging(0.685) TCGA-D7-6524-01 2 219846752 219846752 A G FEV Silent p.H118H 0.10 TCGA-D7-6524-01 2 234431906 234431906 A T USP40 Missense_Mutation p.I715N 0.13 deleterious(0.01) possibly_damaging(0.667) TCGA-D7-6524-01 2 31165143 31165143 G A GALNT14 Silent p.F290F 0.18 TCGA-D7-6524-01 2 70527986 70527986 G C FAM136A Missense_Mutation p.L72V 0.14 deleterious(0.02) possibly_damaging(0.558) TCGA-D7-6524-01 3 194158159 194158159 G T ATP13A3 Missense_Mutation p.P627Q 0.19 deleterious(0) possibly_damaging(0.895) TCGA-D7-6524-01 3 36534690 36534690 C T STAC Silent p.G245G 0.09 TCGA-D7-6524-01 3 41266453 41266453 G A CTNNB1 Missense_Mutation p.G84R 0.15 tolerated(0.62) benign(0.001) TCGA-D7-6524-01 3 41266572 41266572 G T CTNNB1 Missense_Mutation p.Q123H 0.23 deleterious(0.02) benign(0.198) TCGA-D7-6524-01 3 64633635 64633635 G A ADAMTS9 Missense_Mutation p.T564M 0.10 deleterious(0) probably_damaging(1) TCGA-D7-6524-01 3 77526667 77526667 C G ROBO2 Missense_Mutation p.T180S 0.17 tolerated(0.34) benign(0.238) TCGA-D7-6524-01 4 114254248 114254248 G A ANK2 Missense_Mutation p.R1088Q 0.12 probably_damaging(1) TCGA-D7-6524-01 4 13612673 13612673 C A BOD1L1 Missense_Mutation p.S459I 0.08 possibly_damaging(0.595) TCGA-D7-6524-01 4 187516845 187516845 T C FAT1 Missense_Mutation p.N4379S 0.13 probably_damaging(0.997) TCGA-D7-6524-01 5 140054699 140054699 C T HARS Missense_Mutation p.R405Q 0.06 deleterious(0.02) benign(0.133) TCGA-D7-6524-01 5 140554375 140554375 G A PCDHB7 Silent p.S653S 0.05 TCGA-D7-6524-01 5 149499084 149499084 T C PDGFRB Missense_Mutation p.N915S 0.10 tolerated(0.24) possibly_damaging(0.679) TCGA-D7-6524-01 5 157078284 157078284 G A SOX30 Missense_Mutation p.P268L 0.11 tolerated(0.13) benign(0.059) TCGA-D7-6524-01 5 179393912 179393912 G A RNF130 Silent p.G348G 0.06 TCGA-D7-6524-01 5 54405923 54405923 C T GZMA Silent p.C234C 0.06 TCGA-D7-6524-01 5 5463370 5463370 C T KIAA0947 Missense_Mutation p.T1308M 0.15 deleterious(0.02) benign(0.024) TCGA-D7-6524-01 5 78347179 78347179 A G DMGDH Missense_Mutation p.S226P 0.11 tolerated(0.37) benign(0.002) TCGA-D7-6524-01 6 10430539 10430539 C T LINC00518 RNA 0.16 TCGA-D7-6524-01 6 110300361 110300361 G T GPR6 Missense_Mutation p.V16L 0.09 tolerated_low_confidence(0.27) benign(0.001) TCGA-D7-6524-01 6 111654434 111654434 T C REV3L Missense_Mutation p.Y2606C 0.21 deleterious(0.01) probably_damaging(1) TCGA-D7-6524-01 6 152671459 152671459 G T SYNE1 Missense_Mutation p.F3915L 0.19 benign(0.001) TCGA-D7-6524-01 6 152708291 152708291 G A SYNE1 Silent p.Y2801Y 0.13 TCGA-D7-6524-01 6 166844054 166844054 G A RPS6KA2 Missense_Mutation p.R498C 0.12 deleterious(0) benign(0.014) TCGA-D7-6524-01 6 37414202 37414202 G A CMTR1 Missense_Mutation p.V141M 0.14 deleterious(0.01) benign(0.168) TCGA-D7-6524-01 6 42992783 42992783 C T RRP36 Missense_Mutation p.T64M 0.15 tolerated(0.07) benign(0.036) TCGA-D7-6524-01 6 74229773 74229775 ACG - EEF1A1 5'UTR 0.12 TCGA-D7-6524-01 7 102453857 102453857 A T FBXL13 Missense_Mutation p.S714T 0.12 tolerated_low_confidence(0.83) benign(0.001) TCGA-D7-6524-01 7 140037083 140037083 C T SLC37A3 Splice_Site p.X464_splice 0.14 TCGA-D7-6524-01 7 141727496 141727496 G A MGAM Silent p.R394R 0.14 TCGA-D7-6524-01 8 116599450 116599450 C A TRPS1 Silent p.L826L 0.10 TCGA-D7-6524-01 8 1626397 1626397 G A DLGAP2 Missense_Mutation p.R689H 0.10 deleterious(0.03) probably_damaging(1) TCGA-D7-6524-01 8 23538802 23538802 C T NKX3-1 Missense_Mutation p.V213M 0.14 tolerated(1) benign(0.012) TCGA-D7-6524-01 8 41906091 41906091 G T KAT6A Missense_Mutation p.F135L 0.07 benign(0.014) TCGA-D7-6524-01 9 101891357 101891357 C A TGFBR1 Nonsense_Mutation p.C106* 0.26 TCGA-D7-6524-01 9 107266848 107266848 A G OR13F1 Missense_Mutation p.Y102C 0.28 tolerated(0.2) probably_damaging(0.999) TCGA-D7-6524-01 9 134165439 134165439 C A PPAPDC3 Silent p.R19R 0.16 TCGA-D7-6524-01 9 99521449 99521449 G A ZNF510 Nonsense_Mutation p.R555* 0.12 TCGA-D7-6524-01 X 100533036 100533036 C T TAF7L Splice_Site p.X279_splice 0.29 TCGA-D7-6524-01 X 147084750 147084750 C A FMR1NB Missense_Mutation p.H103N 0.28 tolerated(0.3) benign(0) TCGA-D7-6524-01 X 155255036 155255036 C G WASH6P RNA 0.14 TCGA-D7-6524-01 X 2867487 2867487 G A ARSE Missense_Mutation p.L238F 0.23 tolerated(1) benign(0.002) TCGA-D7-6525-01 10 101835745 101835745 C T CPN1 Missense_Mutation p.V115I 0.23 tolerated(0.23) benign(0.01) TCGA-D7-6525-01 10 114136171 114136171 C T ACSL5 Missense_Mutation p.S35L 0.31 deleterious_low_confidence(0.03) possibly_damaging(0.504) TCGA-D7-6525-01 10 11523795 11523795 C T USP6NL Missense_Mutation p.R368Q 0.16 deleterious(0) probably_damaging(0.985) TCGA-D7-6525-01 10 117059577 117059577 A C ATRNL1 Missense_Mutation p.N817H 0.21 tolerated(0.07) probably_damaging(0.999) TCGA-D7-6525-01 10 16562644 16562644 C T C1QL3 Missense_Mutation p.E141K 0.35 deleterious(0.02) possibly_damaging(0.642) TCGA-D7-6525-01 10 60560026 60560026 G T BICC1 Missense_Mutation p.D600Y 0.32 deleterious(0) probably_damaging(0.94) TCGA-D7-6525-01 11 113295233 113295233 G T DRD2 Silent p.V47V 0.27 TCGA-D7-6525-01 11 124294043 124294043 G C OR8B4 Missense_Mutation p.S242C 0.35 deleterious_low_confidence(0) probably_damaging(0.964) TCGA-D7-6525-01 11 132290089 132290089 A G OPCML Nonstop_Mutation p.*346Rext*1 0.22 TCGA-D7-6525-01 11 20959354 20959354 A C NELL1 Missense_Mutation p.K340N 0.25 tolerated(0.16) benign(0.002) TCGA-D7-6525-01 11 35232982 35232982 A G CD44 Missense_Mutation p.N599S 0.29 tolerated(0.08) benign(0.005) TCGA-D7-6525-01 11 36594879 36594879 T G RAG1 Missense_Mutation p.L9V 0.41 tolerated_low_confidence(0.64) probably_damaging(0.931) TCGA-D7-6525-01 11 40136913 40136913 C A LRRC4C Silent p.L310L 0.26 TCGA-D7-6525-01 11 45671646 45671646 G A CHST1 Silent p.C276C 0.36 TCGA-D7-6525-01 11 48510689 48510689 G T OR4A47 Silent p.V115V 0.25 TCGA-D7-6525-01 11 5246817 5246817 A G HBB 3'UTR 0.28 TCGA-D7-6525-01 11 5411155 5411155 A G OR51M1 Missense_Mutation p.K176R 0.25 tolerated(0.23) benign(0.006) TCGA-D7-6525-01 11 55890635 55890635 A G OR8H3 Missense_Mutation p.R263G 0.30 deleterious(0.04) benign(0.008) TCGA-D7-6525-01 11 57958763 57958763 C A OR9Q2 Silent p.S267S 0.26 TCGA-D7-6525-01 11 88961116 88961116 C A TYR Missense_Mutation p.L388I 0.15 tolerated(0.08) probably_damaging(0.999) TCGA-D7-6525-01 11 89774393 89774393 T G TRIM49C Missense_Mutation p.V345G 0.28 deleterious(0) probably_damaging(0.967) TCGA-D7-6525-01 11 95509183 95509183 G A FAM76B Missense_Mutation p.T278I 0.23 deleterious(0) probably_damaging(0.991) TCGA-D7-6525-01 12 111779799 111779799 C A CUX2 Missense_Mutation p.L1201I 0.33 deleterious(0) probably_damaging(0.997) TCGA-D7-6525-01 12 12022503 12022503 C G ETV6 Silent p.S203S 0.11 TCGA-D7-6525-01 12 129563232 129563232 C A TMEM132D Missense_Mutation p.K654N 0.15 deleterious(0) probably_damaging(0.962) TCGA-D7-6525-01 12 133357449 133357449 G - GOLGA3 Frame_Shift_Del p.V1174Sfs*8 0.17 TCGA-D7-6525-01 12 22408298 22408298 T G ST8SIA1 Missense_Mutation p.K136T 0.28 deleterious(0.01) benign(0.406) TCGA-D7-6525-01 12 46231349 46231349 C T ARID2 Nonsense_Mutation p.Q397* 0.50 TCGA-D7-6525-01 12 5020801 5020801 G A KCNA1 Missense_Mutation p.R86Q 0.36 deleterious(0) probably_damaging(0.999) TCGA-D7-6525-01 12 52100394 52100394 G A SCN8A Silent p.G510G 0.20 TCGA-D7-6525-01 12 54423485 54423485 G A HOXC6 Silent p.S149S 0.27 TCGA-D7-6525-01 12 6647006 6647006 T C GAPDH Missense_Mutation p.V261A 0.22 tolerated_low_confidence(0.53) benign(0.43) TCGA-D7-6525-01 12 78444720 78444720 G A NAV3 Missense_Mutation p.R770Q 0.46 tolerated(0.1) possibly_damaging(0.806) TCGA-D7-6525-01 12 81283099 81283099 T G LIN7A Missense_Mutation p.E44D 0.28 tolerated(0.28) benign(0.001) TCGA-D7-6525-01 12 99007790 99007790 T - IKBIP Frame_Shift_Del p.N209Ifs*3 0.29 TCGA-D7-6525-01 13 102030937 102030937 A G NALCN Missense_Mutation p.V120A 0.34 tolerated(0.19) benign(0.102) TCGA-D7-6525-01 13 112722355 112722355 C T SOX1 Missense_Mutation p.T128M 0.56 deleterious(0) probably_damaging(0.957) TCGA-D7-6525-01 13 23905184 23905184 A G SACS Silent p.P4277P 0.16 TCGA-D7-6525-01 13 31725791 31725791 T C HSPH1 Silent p.S206S 0.47 TCGA-D7-6525-01 13 38229234 38229234 T C TRPC4 Silent p.Q625Q 0.31 TCGA-D7-6525-01 13 88329829 88329829 C T SLITRK5 Missense_Mutation p.A729V 0.27 tolerated(0.19) benign(0.011) TCGA-D7-6525-01 13 93879587 93879588 - G GPC6 5'UTR 0.44 TCGA-D7-6525-01 13 98654779 98654779 C T IPO5 Silent p.C407C 0.41 TCGA-D7-6525-01 13 99336893 99336893 G A SLC15A1 3'UTR 0.18 TCGA-D7-6525-01 14 103934456 103934456 G A MARK3 Silent p.Q399Q 0.33 TCGA-D7-6525-01 14 105416442 105416442 C G AHNAK2 Silent p.V1782V 0.24 TCGA-D7-6525-01 14 51561231 51561231 G A TRIM9 Missense_Mutation p.R143C 0.37 deleterious(0.01) possibly_damaging(0.872) TCGA-D7-6525-01 14 51721136 51721136 G A TMX1 Missense_Mutation p.E248K 0.38 tolerated(0.18) benign(0.223) TCGA-D7-6525-01 14 55818684 55818684 G T FBXO34 Missense_Mutation p.G526W 0.22 tolerated(0.07) possibly_damaging(0.475) TCGA-D7-6525-01 14 75143434 75143434 G A AREL1 Missense_Mutation p.T168I 0.37 deleterious(0) benign(0.018) TCGA-D7-6525-01 15 42641627 42641627 A G GANC Missense_Mutation p.Q822R 0.21 benign(0.002) TCGA-D7-6525-01 15 43494042 43494042 C T EPB42 Missense_Mutation p.R668K 0.05 tolerated(0.06) benign(0.329) TCGA-D7-6525-01 15 43701941 43701941 T C TP53BP1 Splice_Site p.X1769_splice 0.33 TCGA-D7-6525-01 15 48056124 48056124 T G SEMA6D Silent p.T275T 0.19 TCGA-D7-6525-01 15 51349973 51349973 T G TNFAIP8L3 3'UTR 0.40 TCGA-D7-6525-01 15 81440951 81440951 C A C15orf26 3'UTR 0.20 TCGA-D7-6525-01 15 84651800 84651800 C A ADAMTSL3 Silent p.G1140G 0.35 TCGA-D7-6525-01 15 89760498 89760498 G T RLBP1 Missense_Mutation p.Q67K 0.28 deleterious(0.02) benign(0.011) TCGA-D7-6525-01 15 91035841 91035841 C T IQGAP1 Missense_Mutation p.T1509I 0.24 deleterious(0) probably_damaging(0.998) TCGA-D7-6525-01 15 93467679 93467679 C T CHD2 Missense_Mutation p.S64L 0.36 deleterious(0.01) unknown(0) TCGA-D7-6525-01 16 1634361 1634361 C T IFT140 Missense_Mutation p.E406K 0.23 deleterious(0) possibly_damaging(0.901) TCGA-D7-6525-01 16 17352902 17352902 G A XYLT1 Missense_Mutation p.R286C 0.34 deleterious(0.02) possibly_damaging(0.776) TCGA-D7-6525-01 16 22130291 22130291 C T VWA3A Silent p.H353H 0.38 TCGA-D7-6525-01 16 2546135 2546135 G A RP11-20I23.1 5'UTR 0.25 TCGA-D7-6525-01 16 31500028 31500028 C T SLC5A2 Silent p.F405F 0.35 TCGA-D7-6525-01 16 55857581 55857581 G T CES1 Silent p.I140I 0.13 TCGA-D7-6525-01 16 67325601 67325601 C T KCTD19 Silent p.T786T 0.39 TCGA-D7-6525-01 16 720267 720267 G A RHOT2 Silent p.V116V 0.31 TCGA-D7-6525-01 16 7703860 7703860 C T RBFOX1 Silent p.Y287Y 0.27 TCGA-D7-6525-01 16 87451107 87451107 G A ZCCHC14 Missense_Mutation p.H311Y 0.31 deleterious(0) probably_damaging(0.999) TCGA-D7-6525-01 17 34160922 34160922 G A TAF15 Missense_Mutation p.R206H 0.25 deleterious_low_confidence(0) probably_damaging(0.964) TCGA-D7-6525-01 17 34493394 34493394 T C TBC1D3B Missense_Mutation p.Q544R 0.43 deleterious_low_confidence(0) benign(0.255) TCGA-D7-6525-01 17 39633390 39633390 G A KRT35 Missense_Mutation p.A429V 0.05 tolerated(0.47) benign(0.002) TCGA-D7-6525-01 17 729219 729219 T A NXN Missense_Mutation p.I154F 0.33 deleterious(0) benign(0.383) TCGA-D7-6525-01 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.48 TCGA-D7-6525-01 17 7611546 7611546 G T EFNB3 Silent p.S131S 0.47 TCGA-D7-6525-01 17 80017925 80017925 C T DUS1L Missense_Mutation p.R356Q 0.12 deleterious(0.03) benign(0.102) TCGA-D7-6525-01 17 80039961 80039961 C A FASN Silent p.A2029A 0.20 TCGA-D7-6525-01 18 19997725 19997725 C T CTAGE1 Missense_Mutation p.R17H 0.07 tolerated(0.06) benign(0.001) TCGA-D7-6525-01 18 22806953 22806955 TTC - ZNF521 In_Frame_Del p.K309del 0.29 TCGA-D7-6525-01 18 51053126 51053126 C A DCC Silent p.A1417A 0.26 TCGA-D7-6525-01 18 6239858 6239858 G T L3MBTL4 Missense_Mutation p.S189Y 0.41 deleterious(0.01) benign(0.109) TCGA-D7-6525-01 18 6859866 6859866 G C ARHGAP28 Silent p.G73G 0.16 TCGA-D7-6525-01 19 11978219 11978219 A C ZNF439 Missense_Mutation p.K112T 0.43 tolerated(0.3) probably_damaging(0.931) TCGA-D7-6525-01 19 37676443 37676443 C G ZNF585B Missense_Mutation p.E666Q 0.25 tolerated(0.4) probably_damaging(0.981) TCGA-D7-6525-01 19 45368587 45368587 G A PVRL2 Missense_Mutation p.V50M 0.37 deleterious(0) probably_damaging(0.99) TCGA-D7-6525-01 19 53645699 53645699 C T ZNF347 Missense_Mutation p.G129R 0.32 deleterious(0.01) possibly_damaging(0.541) TCGA-D7-6525-01 19 55107788 55107789 - C LILRA1 Frame_Shift_Ins p.L367Pfs*11 0.29 TCGA-D7-6525-01 19 55693420 55693420 C G PTPRH Missense_Mutation p.K1054N 0.28 probably_damaging(0.992) TCGA-D7-6525-01 19 55823347 55823347 C T BRSK1 Missense_Mutation p.R750C 0.42 deleterious_low_confidence(0.01) possibly_damaging(0.723) TCGA-D7-6525-01 19 56466131 56466131 A G NLRP8 Missense_Mutation p.K236R 0.26 tolerated(0.16) probably_damaging(0.999) TCGA-D7-6525-01 19 57088868 57088868 T C ZNF470 Silent p.H357H 0.31 TCGA-D7-6525-01 19 57335788 57335788 G T PEG3 Missense_Mutation p.T79N 0.26 deleterious(0.04) benign(0.417) TCGA-D7-6525-01 19 872114 872114 G A MED16 Missense_Mutation p.S637F 0.56 tolerated(0.27) possibly_damaging(0.788) TCGA-D7-6525-01 19 9066275 9066275 C A MUC16 Missense_Mutation p.K7057N 0.43 unknown(0) TCGA-D7-6525-01 19 9489708 9489708 A - ZNF177 Frame_Shift_Del p.N37Ifs*6 0.37 TCGA-D7-6525-01 1 145075742 145075742 G A PDE4DIP Nonsense_Mutation p.Q41* 0.06 TCGA-D7-6525-01 1 145562224 145562224 C T ANKRD35 Missense_Mutation p.R638W 0.08 deleterious(0) possibly_damaging(0.876) TCGA-D7-6525-01 1 157062655 157062655 C T ETV3L Missense_Mutation p.G291E 0.32 deleterious(0.01) possibly_damaging(0.751) TCGA-D7-6525-01 1 158057640 158057640 T G KIRREL Missense_Mutation p.L253V 0.35 tolerated(0.1) benign(0.039) TCGA-D7-6525-01 1 193107220 193107221 AG - CDC73 Frame_Shift_Del p.E144Vfs*5 0.29 TCGA-D7-6525-01 1 202715452 202715452 C G KDM5B Splice_Site p.X673_splice 0.09 TCGA-D7-6525-01 1 220440984 220440985 - GT RAB3GAP2 Intron 0.24 TCGA-D7-6525-01 1 247752185 247752185 G A OR2G2 Missense_Mutation p.R175H 0.26 tolerated(0.59) benign(0.01) TCGA-D7-6525-01 1 247769166 247769166 T C OR2G3 Silent p.T93T 0.25 TCGA-D7-6525-01 1 248402821 248402821 A G OR2M4 Silent p.R197R 0.35 TCGA-D7-6525-01 1 28807116 28807116 G C PHACTR4 Missense_Mutation p.R597P 0.19 deleterious(0) probably_damaging(1) TCGA-D7-6525-01 1 28823079 28823079 G C PHACTR4 3'UTR 0.29 TCGA-D7-6525-01 1 45293539 45293539 C A PTCH2 Silent p.P678P 0.15 TCGA-D7-6525-01 1 49201942 49201942 G A BEND5 Silent p.P359P 0.33 TCGA-D7-6525-01 1 75037172 75037172 A C C1orf173 Missense_Mutation p.L1408V 0.28 tolerated(0.28) benign(0.047) TCGA-D7-6525-01 1 79093642 79093642 T A IFI44L Missense_Mutation p.H14Q 0.25 tolerated(0.59) benign(0.16) TCGA-D7-6525-01 1 909420 909420 G A PLEKHN1 Missense_Mutation p.A548T 0.27 tolerated(0.11) benign(0.007) TCGA-D7-6525-01 1 92944272 92944272 G A GFI1 Silent p.F321F 0.30 TCGA-D7-6525-01 20 21687213 21687213 G A PAX1 Missense_Mutation p.V142I 0.28 deleterious(0.03) probably_damaging(0.992) TCGA-D7-6525-01 20 2638596 2638598 AAG - NOP56 In_Frame_Del p.K484del 0.46 TCGA-D7-6525-01 20 43964515 43964515 G A SDC4 Nonsense_Mutation p.R36* 0.18 TCGA-D7-6525-01 20 5099508 5099508 A G PCNA Missense_Mutation p.S76P 0.44 deleterious(0.01) benign(0.086) TCGA-D7-6525-01 21 11039010 11039010 C A BAGE2 RNA 0.06 TCGA-D7-6525-01 21 11097600 11097600 T G BAGE2 RNA 0.09 TCGA-D7-6525-01 21 15538737 15538737 A C LIPI Missense_Mutation p.F248V 0.31 deleterious(0) probably_damaging(0.999) TCGA-D7-6525-01 21 19725236 19725236 A G TMPRSS15 Silent p.T385T 0.33 TCGA-D7-6525-01 21 28212865 28212865 G T ADAMTS1 Missense_Mutation p.D465E 0.47 deleterious(0) probably_damaging(0.996) TCGA-D7-6525-01 21 47731399 47731399 G T C21orf58 Missense_Mutation p.P231H 0.18 deleterious(0) probably_damaging(0.912) TCGA-D7-6525-01 22 22057704 22057704 G A YPEL1 Silent p.A75A 0.15 TCGA-D7-6525-01 22 24953726 24953726 T C SNRPD3 Silent p.Y28Y 0.24 TCGA-D7-6525-01 22 36690198 36690198 G T MYH9 Silent p.V1259V 0.22 TCGA-D7-6525-01 2 100009484 100009484 G A EIF5B Missense_Mutation p.G935R 0.31 probably_damaging(0.986) TCGA-D7-6525-01 2 113500376 113500376 C A NT5DC4 3'UTR 0.30 TCGA-D7-6525-01 2 141250255 141250255 T G LRP1B Missense_Mutation p.E3014D 0.20 benign(0.217) TCGA-D7-6525-01 2 148693027 148693027 G A ORC4 3'UTR 0.23 TCGA-D7-6525-01 2 1652213 1652213 G T PXDN Silent p.G1113G 0.25 TCGA-D7-6525-01 2 166020363 166020363 G C SCN3A Intron 0.19 TCGA-D7-6525-01 2 167141141 167141141 C T SCN9A Missense_Mutation p.S599N 0.26 tolerated(0.63) benign(0.004) TCGA-D7-6525-01 2 1677547 1677547 A C PXDN Missense_Mutation p.L296V 0.25 tolerated(0.26) benign(0.259) TCGA-D7-6525-01 2 179654102 179654102 T G TTN Missense_Mutation p.Q687H 0.31 TCGA-D7-6525-01 2 179702352 179702352 T G CCDC141 Missense_Mutation p.E1198D 0.28 tolerated(0.12) possibly_damaging(0.673) TCGA-D7-6525-01 2 196673538 196673538 G A DNAH7 Silent p.A3317A 0.21 TCGA-D7-6525-01 2 20511426 20511426 T C PUM2 Splice_Site p.X117_splice 0.28 TCGA-D7-6525-01 2 207620121 207620121 T C MDH1B Silent p.E174E 0.36 TCGA-D7-6525-01 2 210558112 210558112 A C MAP2 Missense_Mutation p.K406N 0.30 tolerated_low_confidence(0.08) benign(0.008) TCGA-D7-6525-01 2 223488429 223488429 A C FARSB Silent p.T397T 0.30 TCGA-D7-6525-01 2 228881277 228881277 A G SPHKAP Silent p.I1431I 0.24 TCGA-D7-6525-01 2 233322819 233322819 G A ALPI Missense_Mutation p.R323H 0.19 deleterious(0.01) benign(0.017) TCGA-D7-6525-01 2 26688846 26688846 G A OTOF Silent p.I1533I 0.31 TCGA-D7-6525-01 2 27465519 27465519 G A CAD Missense_Mutation p.R2085H 0.23 deleterious(0) probably_damaging(0.999) TCGA-D7-6525-01 2 37873541 37873541 C T CDC42EP3 Missense_Mutation p.E64K 0.27 deleterious(0.04) possibly_damaging(0.857) TCGA-D7-6525-01 2 69555475 69555475 C T GFPT1 Silent p.V607V 0.31 TCGA-D7-6525-01 2 96697824 96697824 G A GPAT2 Missense_Mutation p.P45L 0.20 deleterious(0) unknown(0) TCGA-D7-6525-01 3 130095348 130095348 G A COL6A5 Silent p.K112K 0.40 TCGA-D7-6525-01 3 140397174 140397174 C T TRIM42 Missense_Mutation p.R35W 0.36 deleterious(0) probably_damaging(0.991) TCGA-D7-6525-01 3 1418726 1418726 A G CNTN6 Silent p.G711G 0.43 TCGA-D7-6525-01 3 183979028 183979028 C A CAMK2N2 Missense_Mutation p.G16C 0.14 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-D7-6525-01 3 42260998 42260998 G A TRAK1 Missense_Mutation p.G659E 0.44 deleterious(0) probably_damaging(1) TCGA-D7-6525-01 3 52968852 52968852 G A SFMBT1 Missense_Mutation p.P144S 0.19 tolerated(0.09) benign(0.166) TCGA-D7-6525-01 3 99569565 99569565 G A FILIP1L Nonsense_Mutation p.Q319* 0.23 TCGA-D7-6525-01 4 122853799 122853799 C T TRPC3 Missense_Mutation p.R205H 0.35 deleterious(0) probably_damaging(0.987) TCGA-D7-6525-01 4 148457038 148457038 G A EDNRA Missense_Mutation p.D253N 0.18 tolerated(0.29) benign(0.02) TCGA-D7-6525-01 4 155242139 155242139 G A DCHS2 Missense_Mutation p.T1016M 0.31 tolerated(0.54) benign(0.142) TCGA-D7-6525-01 4 178896959 178896959 A G LINC01098 Silent p.G54G 0.29 TCGA-D7-6525-01 4 20487885 20487885 T G SLIT2 Missense_Mutation p.L201R 0.15 deleterious(0) probably_damaging(0.999) TCGA-D7-6525-01 4 41648596 41648596 A C LIMCH1 Missense_Mutation p.T451P 0.08 deleterious(0) probably_damaging(0.993) TCGA-D7-6525-01 4 42145964 42145964 G T BEND4 Missense_Mutation p.L179I 0.36 deleterious_low_confidence(0) possibly_damaging(0.899) TCGA-D7-6525-01 4 42895343 42895343 C T GRXCR1 Silent p.I20I 0.16 TCGA-D7-6525-01 4 509771 509771 G A PIGG Missense_Mutation p.R304Q 0.23 tolerated(0.33) benign(0.124) TCGA-D7-6525-01 4 6303278 6303278 G A WFS1 Missense_Mutation p.A586T 0.31 tolerated(0.26) benign(0.016) TCGA-D7-6525-01 4 70146482 70146482 T A UGT2B28 Missense_Mutation p.N88K 0.05 tolerated(0.69) benign(0.016) TCGA-D7-6525-01 4 71020099 71020099 C A C4orf40 Missense_Mutation p.L3I 0.25 deleterious(0.02) benign(0.135) TCGA-D7-6525-01 4 77955707 77955707 G T SEPT11 3'UTR 0.14 TCGA-D7-6525-01 5 110427984 110427984 T G WDR36 5'UTR 0.28 TCGA-D7-6525-01 5 127614390 127614390 G A FBN2 Missense_Mutation p.P2428S 0.22 deleterious(0.02) possibly_damaging(0.734) TCGA-D7-6525-01 5 13824336 13824336 A T DNAH5 Missense_Mutation p.V2184E 0.33 benign(0.403) TCGA-D7-6525-01 5 140168138 140168138 C T PCDHA1 Missense_Mutation p.R755W 0.25 deleterious_low_confidence(0) benign(0.062) TCGA-D7-6525-01 5 140263569 140263569 C T PCDHA13 Silent p.S572S 0.26 TCGA-D7-6525-01 5 140590358 140590358 G A PCDHB12 Missense_Mutation p.A627T 0.16 tolerated_low_confidence(0.23) benign(0.032) TCGA-D7-6525-01 5 156816394 156816394 C T CYFIP2 Silent p.F1109F 0.21 TCGA-D7-6525-01 5 162901197 162901197 C A HMMR Missense_Mutation p.L347M 0.26 deleterious(0) probably_damaging(0.996) TCGA-D7-6525-01 5 37020626 37020626 G A NIPBL Missense_Mutation p.M1692I 0.30 tolerated(0.34) benign(0) TCGA-D7-6525-01 5 37183749 37183749 T C C5orf42 Missense_Mutation p.R1512G 0.28 tolerated(0.08) benign(0.02) TCGA-D7-6525-01 5 79031976 79031976 G T CMYA5 Missense_Mutation p.R2463I 0.29 probably_damaging(0.979) TCGA-D7-6525-01 5 89949196 89949196 T G GPR98 Missense_Mutation p.F1269V 0.22 possibly_damaging(0.587) TCGA-D7-6525-01 6 130761908 130761908 G A TMEM200A Missense_Mutation p.R114H 0.51 tolerated(0.06) benign(0.002) TCGA-D7-6525-01 6 17675564 17675564 G C NUP153 Missense_Mutation p.L207V 0.35 deleterious(0.04) probably_damaging(0.951) TCGA-D7-6525-01 7 100395420 100395420 G A ZAN 3'Flank 0.19 TCGA-D7-6525-01 7 142032390 142032390 C A TRBV7-1 Silent p.G70G 0.24 TCGA-D7-6525-01 7 157177654 157177654 T C DNAJB6 Missense_Mutation p.I191T 0.45 deleterious(0.02) unknown(0) TCGA-D7-6525-01 7 37780254 37780254 T G GPR141 Missense_Mutation p.F87V 0.36 deleterious(0.02) benign(0.202) TCGA-D7-6525-01 7 38534094 38534094 G A AMPH Missense_Mutation p.S80L 0.28 deleterious(0) probably_damaging(0.945) TCGA-D7-6525-01 7 64168394 64168394 A G ZNF107 Missense_Mutation p.K571R 0.33 tolerated(0.15) possibly_damaging(0.636) TCGA-D7-6525-01 7 90546950 90546950 A T CDK14 Missense_Mutation p.Y228F 0.40 tolerated(0.18) possibly_damaging(0.628) TCGA-D7-6525-01 7 94937461 94937461 A G PON1 Missense_Mutation p.L187P 0.29 tolerated(0.1) benign(0.131) TCGA-D7-6525-01 8 100729456 100729456 G A VPS13B Missense_Mutation p.S2196N 0.23 tolerated(0.17) benign(0.213) TCGA-D7-6525-01 8 106431376 106431376 G T ZFPM2 Silent p.P15P 0.22 TCGA-D7-6525-01 8 13357278 13357278 T C DLC1 Silent p.E101E 0.32 TCGA-D7-6525-01 8 142490526 142490526 A - MROH5 3'UTR 0.31 TCGA-D7-6525-01 8 145998712 145998712 C A ZNF34 Missense_Mutation p.R541L 0.33 deleterious(0.04) possibly_damaging(0.667) TCGA-D7-6525-01 8 18729760 18729760 G A PSD3 Missense_Mutation p.T205M 0.30 deleterious_low_confidence(0.05) benign(0.032) TCGA-D7-6525-01 8 35425650 35425650 T C UNC5D Silent p.T119T 0.04 TCGA-D7-6525-01 8 42231770 42231770 C G DKK4 Missense_Mutation p.V175L 0.06 deleterious(0.02) possibly_damaging(0.494) TCGA-D7-6525-01 8 52323896 52323896 G A PXDNL Missense_Mutation p.A659V 0.53 deleterious(0) possibly_damaging(0.656) TCGA-D7-6525-01 8 54891686 54891686 T C TCEA1 Missense_Mutation p.K242E 0.13 tolerated(0.07) possibly_damaging(0.609) TCGA-D7-6525-01 8 6312749 6312749 G T MCPH1 Missense_Mutation p.L637F 0.26 deleterious(0.03) benign(0.01) TCGA-D7-6525-01 9 135202556 135202556 T A SETX Missense_Mutation p.M1477L 0.04 tolerated(0.59) benign(0) TCGA-D7-6525-01 9 135462862 135462862 G A BARHL1 Missense_Mutation p.V205M 0.80 deleterious(0) probably_damaging(1) TCGA-D7-6525-01 9 16436469 16436469 T G BNC2 Missense_Mutation p.S575R 0.42 deleterious(0) benign(0.155) TCGA-D7-6525-01 X 138856961 138856961 T G ATP11C Missense_Mutation p.T705P 0.51 tolerated(0.08) possibly_damaging(0.756) TCGA-D7-6525-01 X 150869097 150869097 C G PRRG3 Silent p.A96A 0.58 TCGA-D7-6525-01 X 152813388 152813388 G A ATP2B3 Missense_Mutation p.A352T 0.53 tolerated(0.6) benign(0.003) TCGA-D7-6525-01 X 54956444 54956444 A T TRO Missense_Mutation p.N1096I 0.57 tolerated(0.12) probably_damaging(0.946) TCGA-D7-6525-01 X 64949468 64949468 A G MSN Missense_Mutation p.T121A 0.66 tolerated(0.37) probably_damaging(0.937) TCGA-D7-6525-01 X 91133636 91133636 G A PCDH11X Silent p.E799E 0.63 TCGA-D7-6526-01 10 112360880 112360880 G A SMC3 Missense_Mutation p.R879Q 0.14 tolerated(0.72) possibly_damaging(0.701) TCGA-D7-6526-01 10 11371132 11371132 G C CELF2 Intron 0.18 TCGA-D7-6526-01 10 115423707 115423707 C A NRAP 5'UTR 0.14 TCGA-D7-6526-01 10 124008317 124008317 A G TACC2 Missense_Mutation p.K2851R 0.11 probably_damaging(0.991) TCGA-D7-6526-01 10 21962549 21962549 G A MLLT10 Missense_Mutation p.G441D 0.23 tolerated(0.06) benign(0.305) TCGA-D7-6526-01 10 33197334 33197334 T C ITGB1 Missense_Mutation p.K765E 0.28 deleterious(0) probably_damaging(0.996) TCGA-D7-6526-01 10 37508073 37508073 G A ANKRD30A Missense_Mutation p.E1089K 0.13 deleterious(0.01) possibly_damaging(0.636) TCGA-D7-6526-01 10 55566448 55566448 T G PCDH15 Missense_Mutation p.K1646T 0.13 tolerated_low_confidence(0.53) benign(0) TCGA-D7-6526-01 10 64573486 64573486 G T EGR2 Silent p.A304A 0.18 TCGA-D7-6526-01 10 6470192 6470192 C T PRKCQ Missense_Mutation p.G700R 0.30 tolerated(0.4) benign(0.002) TCGA-D7-6526-01 10 68526056 68526056 G A CTNNA3 Missense_Mutation p.A416V 0.24 tolerated(0.1) benign(0.046) TCGA-D7-6526-01 10 68535270 68535271 - T CTNNA3 Frame_Shift_Ins p.E354Rfs*4 0.15 TCGA-D7-6526-01 10 68535278 68535278 C G CTNNA3 Missense_Mutation p.G351A 0.19 deleterious(0.01) possibly_damaging(0.458) TCGA-D7-6526-01 11 100920672 100920672 G C PGR Missense_Mutation p.L826V 0.13 deleterious(0) probably_damaging(0.984) TCGA-D7-6526-01 11 103306730 103306730 A G DYNC2H1 Silent p.R4149R 0.06 TCGA-D7-6526-01 11 118498963 118498963 G A PHLDB1 Missense_Mutation p.R475Q 0.07 tolerated(0.26) possibly_damaging(0.833) TCGA-D7-6526-01 11 130288995 130288995 C T ADAMTS8 Missense_Mutation p.D305N 0.24 deleterious(0) probably_damaging(0.97) TCGA-D7-6526-01 11 134014823 134014823 G A JAM3 Silent p.T182T 0.16 TCGA-D7-6526-01 11 44297059 44297059 C T ALX4 Missense_Mutation p.D206N 0.20 deleterious(0.01) benign(0.369) TCGA-D7-6526-01 11 46884284 46884284 T C LRP4 Missense_Mutation p.K1753R 0.17 tolerated(0.24) benign(0.175) TCGA-D7-6526-01 11 5462125 5462125 A C OR51I1 Missense_Mutation p.F207C 0.10 tolerated(0.16) possibly_damaging(0.868) TCGA-D7-6526-01 11 55904650 55904650 G T OR8J3 Missense_Mutation p.A182E 0.23 deleterious(0.01) benign(0.197) TCGA-D7-6526-01 11 56000013 56000013 A G OR5T2 Missense_Mutation p.F217L 0.37 deleterious(0.01) possibly_damaging(0.766) TCGA-D7-6526-01 11 56237885 56237885 A G OR5M3 Missense_Mutation p.L30P 0.30 deleterious(0) probably_damaging(0.966) TCGA-D7-6526-01 11 58379103 58379103 C T ZFP91 Missense_Mutation p.S250L 0.37 tolerated(0.05) benign(0.002) TCGA-D7-6526-01 11 61257335 61257335 C T PPP1R32 Silent p.Y375Y 0.11 TCGA-D7-6526-01 11 64009967 64009967 G C FKBP2 Missense_Mutation p.K36N 0.14 deleterious(0.01) probably_damaging(0.991) TCGA-D7-6526-01 11 64940349 64940349 C T SPDYC Silent p.C237C 0.17 TCGA-D7-6526-01 11 66444414 66444414 G T RBM4B Missense_Mutation p.T46K 0.25 tolerated(0.5) benign(0.03) TCGA-D7-6526-01 11 821985 821985 G A PNPLA2 Missense_Mutation p.V150M 0.16 deleterious(0.01) probably_damaging(0.994) TCGA-D7-6526-01 11 89774338 89774338 A C TRIM49C Missense_Mutation p.S327R 0.06 tolerated(0.19) benign(0.01) TCGA-D7-6526-01 12 100995421 100995421 A T GAS2L3 Nonsense_Mutation p.K65* 0.14 TCGA-D7-6526-01 12 102155373 102155373 C T GNPTAB Missense_Mutation p.D962N 0.26 tolerated(0.06) benign(0.242) TCGA-D7-6526-01 12 114390388 114390388 A T RBM19 Missense_Mutation p.V310D 0.37 deleterious(0) probably_damaging(0.956) TCGA-D7-6526-01 12 21626568 21626568 C A RECQL Missense_Mutation p.R455L 0.60 deleterious(0) probably_damaging(0.997) TCGA-D7-6526-01 12 31586168 31586168 C T DENND5B Missense_Mutation p.R676Q 0.07 deleterious(0.02) possibly_damaging(0.573) TCGA-D7-6526-01 12 32908614 32908614 G A YARS2 Silent p.F65F 0.14 TCGA-D7-6526-01 12 32994053 32994053 T C PKP2 Missense_Mutation p.I533V 0.04 tolerated(0.3) benign(0.338) TCGA-D7-6526-01 12 40728856 40728856 T G LRRK2 Missense_Mutation p.L1949V 0.53 deleterious(0) probably_damaging(0.999) TCGA-D7-6526-01 12 49443503 49443503 G A KMT2D Missense_Mutation p.R1290W 0.24 probably_damaging(0.989) TCGA-D7-6526-01 12 52943836 52943836 G A KRT71 Silent p.D211D 0.27 TCGA-D7-6526-01 12 53454673 53454673 C T TENC1 Missense_Mutation p.H1005Y 0.40 tolerated(0.36) benign(0.002) TCGA-D7-6526-01 12 57605723 57605723 C T LRP1 Silent p.I4424I 0.14 TCGA-D7-6526-01 12 65857134 65857134 T G MSRB3 3'UTR 0.22 TCGA-D7-6526-01 12 91348076 91348076 G A CCER1 Silent p.R148R 0.11 TCGA-D7-6526-01 12 91502123 91502123 A C LUM Missense_Mutation p.L212V 0.43 deleterious(0.04) possibly_damaging(0.685) TCGA-D7-6526-01 13 102379130 102379130 C - FGF14 Frame_Shift_Del p.E152Nfs*9 0.08 TCGA-D7-6526-01 13 109793645 109793645 C T MYO16 Silent p.D1673D 0.21 TCGA-D7-6526-01 13 113512571 113512571 G A ATP11A Silent p.R878R 0.06 TCGA-D7-6526-01 13 114304735 114304735 C T ATP4B Missense_Mutation p.G234R 0.42 deleterious(0) probably_damaging(0.988) TCGA-D7-6526-01 13 46276463 46276463 C G SPERT 5'UTR 0.14 TCGA-D7-6526-01 13 58299162 58299162 T C PCDH17 Silent p.L1072L 0.15 TCGA-D7-6526-01 14 20344477 20344477 C T OR4K2 Silent p.L17L 0.19 TCGA-D7-6526-01 14 20612797 20612797 G T OR4N5 Missense_Mutation p.L301F 0.18 deleterious(0.01) benign(0.02) TCGA-D7-6526-01 14 22314952 22314952 G A TRAV8-2 Silent p.L3L 0.34 TCGA-D7-6526-01 14 47530771 47530771 T - MDGA2 Frame_Shift_Del p.G403Dfs*22 0.17 TCGA-D7-6526-01 14 60903742 60903742 C A C14orf39 Nonsense_Mutation p.G529* 0.34 TCGA-D7-6526-01 14 88904692 88904694 AAT - SPATA7 In_Frame_Del p.N577del 0.25 TCGA-D7-6526-01 14 95058668 95058668 A T SERPINA5 3'UTR 0.19 TCGA-D7-6526-01 15 22382668 22382668 T C OR4N4 Silent p.L66L 0.04 TCGA-D7-6526-01 15 42479994 42479994 G A VPS39 Missense_Mutation p.L135F 0.34 tolerated(0.16) benign(0.032) TCGA-D7-6526-01 15 43552280 43552280 A C TGM5 Missense_Mutation p.F136V 0.36 deleterious(0) probably_damaging(0.997) TCGA-D7-6526-01 15 50838805 50838805 C T USP50 5'UTR 0.89 TCGA-D7-6526-01 15 59192084 59192084 T C SLTM Silent p.S214S 0.74 TCGA-D7-6526-01 15 60806883 60806883 C T RORA Missense_Mutation p.R152Q 0.36 deleterious(0) probably_damaging(1) TCGA-D7-6526-01 16 21080793 21080793 T A DNAH3 Missense_Mutation p.E1108D 0.10 deleterious(0.04) benign(0.366) TCGA-D7-6526-01 16 23421679 23421679 A C COG7 Missense_Mutation p.I471R 0.26 deleterious(0) probably_damaging(0.981) TCGA-D7-6526-01 16 2903991 2903996 GCTTCT - PRSS22 In_Frame_Del p.Q196_K197del 0.10 TCGA-D7-6526-01 16 29913170 29913170 C G ASPHD1 Missense_Mutation p.S293C 0.06 deleterious(0) probably_damaging(0.997) TCGA-D7-6526-01 16 31232220 31232220 T C TRIM72 Missense_Mutation p.Y241H 0.18 deleterious(0.01) benign(0.006) TCGA-D7-6526-01 16 427758 427758 C T TMEM8A Missense_Mutation p.R71H 0.21 tolerated(0.52) benign(0.017) TCGA-D7-6526-01 16 57953078 57953078 C T CNGB1 Missense_Mutation p.D628N 0.43 tolerated(0.16) benign(0.002) TCGA-D7-6526-01 16 71318662 71318662 C A CMTR2 Missense_Mutation p.A388S 0.26 tolerated(0.13) benign(0.011) TCGA-D7-6526-01 16 7703854 7703854 C T RBFOX1 Silent p.A285A 0.08 TCGA-D7-6526-01 16 81953086 81953086 C T PLCG2 Intron 0.35 TCGA-D7-6526-01 17 1562830 1562830 G A PRPF8 Silent p.D1653D 0.51 TCGA-D7-6526-01 17 26961094 26961094 C T KIAA0100 Silent p.R1027R 0.42 TCGA-D7-6526-01 17 35945511 35945511 G A SYNRG Silent p.L133L 0.09 TCGA-D7-6526-01 17 36977249 36977249 A C CWC25 Silent p.A32A 0.05 TCGA-D7-6526-01 17 48618642 48618642 C A EPN3 Silent p.T434T 0.25 TCGA-D7-6526-01 17 57058392 57058393 - T PPM1E 3'UTR 0.11 TCGA-D7-6526-01 17 7573993 7573994 - TCAGC TP53 Nonsense_Mutation p.N345Sfs*2 0.36 TCGA-D7-6526-01 18 31323104 31323104 A C ASXL3 Missense_Mutation p.T1098P 0.13 probably_damaging(0.999) TCGA-D7-6526-01 18 44013342 44013342 C T RNF165 Missense_Mutation p.P84L 0.17 tolerated(0.06) benign(0.171) TCGA-D7-6526-01 18 5489118 5489118 G A EPB41L3 Missense_Mutation p.A22V 0.36 deleterious(0.01) benign(0.251) TCGA-D7-6526-01 18 7017344 7017344 C T LAMA1 Missense_Mutation p.C914Y 0.14 deleterious(0) probably_damaging(1) TCGA-D7-6526-01 18 70209211 70209211 C T CBLN2 Missense_Mutation p.G62D 0.21 deleterious(0) probably_damaging(1) TCGA-D7-6526-01 19 22585671 22585671 T C ZNF98 Missense_Mutation p.K58R 0.33 deleterious(0) possibly_damaging(0.899) TCGA-D7-6526-01 19 30935982 30935982 C T ZNF536 Missense_Mutation p.R505W 0.56 deleterious(0) probably_damaging(0.997) TCGA-D7-6526-01 19 31767432 31767432 C A TSHZ3 3'UTR 0.02 TCGA-D7-6526-01 19 35941123 35941123 C T FFAR2 Silent p.T169T 0.13 TCGA-D7-6526-01 19 37441191 37441191 T C ZNF568 Missense_Mutation p.L379P 0.20 tolerated(0.31) probably_damaging(1) TCGA-D7-6526-01 19 41263268 41263268 C T SNRPA Silent p.S35S 0.76 TCGA-D7-6526-01 19 45992707 45992707 C A RTN2 Missense_Mutation p.A380S 0.09 tolerated(0.05) benign(0.044) TCGA-D7-6526-01 19 49469092 49469092 C G FTL Silent p.A56A 0.67 TCGA-D7-6526-01 19 52519689 52519689 C T ZNF614 Missense_Mutation p.V388I 0.67 tolerated(0.33) probably_damaging(0.963) TCGA-D7-6526-01 19 53384221 53384221 T A ZNF320 Silent p.T386T 0.16 TCGA-D7-6526-01 19 53668541 53668541 G A ZNF665 Missense_Mutation p.P401L 0.14 deleterious(0.04) probably_damaging(0.996) TCGA-D7-6526-01 19 54483128 54483128 C T CACNG8 Silent p.V125V 0.15 TCGA-D7-6526-01 19 57325987 57325987 T C PEG3 Missense_Mutation p.S1275G 0.18 tolerated(0.17) possibly_damaging(0.571) TCGA-D7-6526-01 19 5784313 5784313 C T CTB-54O9.9 3'UTR 0.19 TCGA-D7-6526-01 19 58048765 58048765 T G ZNF549 Silent p.P131P 0.68 TCGA-D7-6526-01 19 58048993 58048993 A T ZNF549 Missense_Mutation p.Q207H 0.12 tolerated(0.05) benign(0) TCGA-D7-6526-01 1 111146041 111146041 T G KCNA2 Missense_Mutation p.K455T 0.28 deleterious_low_confidence(0.03) benign(0.162) TCGA-D7-6526-01 1 111147160 111147160 C T KCNA2 Missense_Mutation p.R82H 0.47 deleterious(0.04) probably_damaging(0.996) TCGA-D7-6526-01 1 115428890 115428890 G C SYCP1 Missense_Mutation p.V384L 0.24 deleterious(0.02) benign(0.027) TCGA-D7-6526-01 1 142713645 142713645 A T RP11-417J8.6 RNA 0.16 TCGA-D7-6526-01 1 144921933 144921933 C T PDE4DIP Missense_Mutation p.E366K 0.03 deleterious(0) possibly_damaging(0.769) TCGA-D7-6526-01 1 145441272 145441272 C A TXNIP 3'UTR 0.29 TCGA-D7-6526-01 1 148017549 148017549 A C NBPF14 Missense_Mutation p.F251C 0.07 deleterious(0) probably_damaging(0.999) TCGA-D7-6526-01 1 152277559 152277559 G T FLG Missense_Mutation p.A3268E 0.33 unknown(0) TCGA-D7-6526-01 1 152279828 152279828 T C FLG Missense_Mutation p.S2512G 0.09 probably_damaging(0.937) TCGA-D7-6526-01 1 152282729 152282729 T G FLG Silent p.R1545R 0.13 TCGA-D7-6526-01 1 152681619 152681620 - A LCE4A Frame_Shift_Ins p.C25Mfs*30 0.12 TCGA-D7-6526-01 1 155207192 155207192 G A GBA Silent p.H313H 0.09 TCGA-D7-6526-01 1 156568060 156568060 A C GPATCH4 Missense_Mutation p.F74V 0.13 deleterious(0) possibly_damaging(0.802) TCGA-D7-6526-01 1 158517000 158517000 T G OR6Y1 Missense_Mutation p.N299T 0.36 deleterious(0) probably_damaging(0.999) TCGA-D7-6526-01 1 170934299 170934299 T C MROH9 Missense_Mutation p.L128P 0.11 deleterious(0.05) benign(0.408) TCGA-D7-6526-01 1 172501623 172501623 T A SUCO 5'Flank 0.12 TCGA-D7-6526-01 1 181764055 181764055 G A CACNA1E Missense_Mutation p.R2028H 0.15 tolerated(0.06) possibly_damaging(0.848) TCGA-D7-6526-01 1 182555272 182555272 G A RNASEL Silent p.L224L 0.17 TCGA-D7-6526-01 1 202571672 202571672 A T SYT2 Missense_Mutation p.L156H 0.14 deleterious(0) probably_damaging(0.996) TCGA-D7-6526-01 1 204197347 204197347 G A PLEKHA6 Silent p.N965N 0.10 TCGA-D7-6526-01 1 206943236 206943236 G C IL10 Missense_Mutation p.R128G 0.14 deleterious(0) probably_damaging(0.921) TCGA-D7-6526-01 1 214815817 214815817 T G CENPF Missense_Mutation p.V1379G 0.12 benign(0.073) TCGA-D7-6526-01 1 216692702 216692702 A C ESRRG Missense_Mutation p.I320M 0.11 deleterious(0.02) probably_damaging(0.994) TCGA-D7-6526-01 1 216692733 216692733 A C ESRRG Missense_Mutation p.M310R 0.11 deleterious(0) probably_damaging(0.954) TCGA-D7-6526-01 1 23417805 23417805 C T LUZP1 Missense_Mutation p.D984N 0.16 tolerated(0.48) benign(0.023) TCGA-D7-6526-01 1 235323865 235323870 TTCGCT - RBM34 In_Frame_Del p.A108_K109del 0.28 TCGA-D7-6526-01 1 236212088 236212088 G A NID1 Missense_Mutation p.P143S 0.09 deleterious(0) possibly_damaging(0.847) TCGA-D7-6526-01 1 237756796 237756796 C A RYR2 Silent p.I1432I 0.14 TCGA-D7-6526-01 1 237758906 237758906 C A RYR2 Missense_Mutation p.S1515R 0.12 possibly_damaging(0.479) TCGA-D7-6526-01 1 24416562 24416562 A T MYOM3 Silent p.A493A 0.10 TCGA-D7-6526-01 1 247263752 247263752 T C ZNF669 Missense_Mutation p.H440R 0.16 deleterious(0.01) benign(0.001) TCGA-D7-6526-01 1 248202430 248202430 C T OR2L2 Silent p.I287I 0.32 TCGA-D7-6526-01 1 26370885 26370885 G A SLC30A2 Missense_Mutation p.L108F 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-D7-6526-01 1 49201993 49201993 G A BEND5 Silent p.S342S 0.16 TCGA-D7-6526-01 1 67301455 67301455 T C WDR78 Silent p.P529P 0.24 TCGA-D7-6526-01 1 8390428 8390428 C T SLC45A1 Missense_Mutation p.P292L 0.27 deleterious(0.01) probably_damaging(0.909) TCGA-D7-6526-01 1 86046635 86046635 C G CYR61 5'UTR 0.31 TCGA-D7-6526-01 1 9097965 9097965 C T SLC2A5 Silent p.P431P 0.36 TCGA-D7-6526-01 1 9790620 9790620 C T CLSTN1 Silent p.Q964Q 0.23 TCGA-D7-6526-01 1 97915763 97915763 A C DPYD Missense_Mutation p.V586G 0.11 deleterious(0) probably_damaging(0.999) TCGA-D7-6526-01 20 20054980 20054980 C T C20orf26 Missense_Mutation p.A110V 0.28 deleterious(0) possibly_damaging(0.869) TCGA-D7-6526-01 20 44983860 44983860 C G SLC35C2 Silent p.V143V 0.30 TCGA-D7-6526-01 20 54573661 54573661 T C CBLN4 Silent p.G186G 0.21 TCGA-D7-6526-01 20 8719977 8719977 C T PLCB1 Missense_Mutation p.R760C 0.23 deleterious(0) probably_damaging(0.998) TCGA-D7-6526-01 21 10862949 10862949 A C IGHV1OR21-1 Missense_Mutation p.K82T 0.03 deleterious(0.04) benign(0.182) TCGA-D7-6526-01 22 17473066 17473066 C G GAB4 Missense_Mutation p.A59P 0.19 deleterious(0) probably_damaging(0.975) TCGA-D7-6526-01 22 21328990 21328990 C T AIFM3 Intron 0.16 TCGA-D7-6526-01 22 22550502 22550502 C A IGLV6-57 Missense_Mutation p.P60Q 0.09 deleterious_low_confidence(0.03) benign(0.168) TCGA-D7-6526-01 22 45928994 45928994 G T FBLN1 Missense_Mutation p.C199F 0.31 deleterious(0) possibly_damaging(0.831) TCGA-D7-6526-01 2 105889361 105889361 C T TGFBRAP1 Silent p.L641L 0.09 TCGA-D7-6526-01 2 108488826 108488826 T A RGPD4 Missense_Mutation p.S1456T 0.30 tolerated(0.41) benign(0.349) TCGA-D7-6526-01 2 113286266 113286266 A G TTL Missense_Mutation p.Y343C 0.36 deleterious(0.04) probably_damaging(0.975) TCGA-D7-6526-01 2 119739960 119739960 G T MARCO Missense_Mutation p.G346V 0.16 deleterious(0) unknown(0) TCGA-D7-6526-01 2 135884189 135884190 - AA RAB3GAP1 Frame_Shift_Ins p.R313Kfs*13 0.12 TCGA-D7-6526-01 2 148705692 148705692 A C ORC4 Missense_Mutation p.F230L 0.19 tolerated(0.19) benign(0.206) TCGA-D7-6526-01 2 149526718 149526718 A G EPC2 Splice_Site p.X381_splice 0.12 TCGA-D7-6526-01 2 165950892 165950892 G A SCN3A Missense_Mutation p.R1510C 0.56 deleterious(0) probably_damaging(0.977) TCGA-D7-6526-01 2 167760240 167760240 A T XIRP2 Missense_Mutation p.K83M 0.34 possibly_damaging(0.893) TCGA-D7-6526-01 2 179400404 179400404 G C TTN Silent p.V33646V 0.42 TCGA-D7-6526-01 2 197757109 197757109 A G PGAP1 Silent p.V350V 0.44 TCGA-D7-6526-01 2 210559045 210559045 C G MAP2 Missense_Mutation p.N717K 0.18 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-D7-6526-01 2 219297563 219297563 C T VIL1 Silent p.A463A 0.59 TCGA-D7-6526-01 2 49217713 49217713 T A FSHR Missense_Mutation p.K146N 0.32 tolerated(0.84) benign(0.005) TCGA-D7-6526-01 2 55209688 55209688 C T RTN4 Missense_Mutation p.R1108H 0.25 deleterious(0.03) probably_damaging(0.979) TCGA-D7-6526-01 2 71795359 71795359 T A DYSF Missense_Mutation p.Y919N 0.31 tolerated(0.11) possibly_damaging(0.828) TCGA-D7-6526-01 3 118931416 118931416 C G B4GALT4 Missense_Mutation p.D339H 0.15 deleterious(0) probably_damaging(0.957) TCGA-D7-6526-01 3 121554150 121554150 A C EAF2 Silent p.G6G 0.21 TCGA-D7-6526-01 3 136141289 136141289 T C STAG1 Missense_Mutation p.D667G 0.17 tolerated(0.11) benign(0.039) TCGA-D7-6526-01 3 136141290 136141290 C A STAG1 Missense_Mutation p.D667Y 0.18 deleterious(0) benign(0.062) TCGA-D7-6526-01 3 156978873 156978873 G T VEPH1 3'UTR 0.13 TCGA-D7-6526-01 3 164735642 164735642 A C SI Silent p.T1180T 0.24 TCGA-D7-6526-01 3 164764774 164764774 T G SI Missense_Mutation p.K581T 0.30 tolerated(0.11) benign(0.333) TCGA-D7-6526-01 3 166960393 166960393 A C ZBBX Missense_Mutation p.F765V 0.19 deleterious(0.02) benign(0.02) TCGA-D7-6526-01 3 167159899 167159899 A G SERPINI2 Nonstop_Mutation p.*406Rext*8 0.11 TCGA-D7-6526-01 3 3030113 3030113 C A CNTN4 Missense_Mutation p.N481K 0.37 deleterious(0) probably_damaging(1) TCGA-D7-6526-01 3 431150 431150 A T CHL1 Silent p.G821G 0.09 TCGA-D7-6526-01 3 44607107 44607107 T A ZKSCAN7 Silent p.P184P 0.19 TCGA-D7-6526-01 3 87027822 87027822 G C VGLL3 Missense_Mutation p.S86C 0.15 deleterious(0) probably_damaging(0.999) TCGA-D7-6526-01 4 115891689 115891689 T A NDST4 Missense_Mutation p.E373V 0.23 deleterious(0) benign(0.133) TCGA-D7-6526-01 4 122754433 122754433 A C BBS7 Missense_Mutation p.F543L 0.14 tolerated(0.75) benign(0.004) TCGA-D7-6526-01 4 158060078 158060078 G C GLRB Missense_Mutation p.C243S 0.11 deleterious(0) possibly_damaging(0.781) TCGA-D7-6526-01 4 158257859 158257859 T G GRIA2 Missense_Mutation p.L602V 0.41 deleterious(0) probably_damaging(0.999) TCGA-D7-6526-01 4 3015511 3015511 C T GRK4 Silent p.L233L 0.12 TCGA-D7-6526-01 4 42524204 42524204 G A ATP8A1 Silent p.L640L 0.44 TCGA-D7-6526-01 4 48611786 48611786 A T FRYL Missense_Mutation p.F156I 0.35 deleterious(0) probably_damaging(0.999) TCGA-D7-6526-01 4 54364820 54364820 G T LNX1 Missense_Mutation p.D322E 0.19 deleterious(0) probably_damaging(0.999) TCGA-D7-6526-01 4 65275058 65275058 C A TECRL Missense_Mutation p.R4S 0.19 deleterious_low_confidence(0.04) benign(0.007) TCGA-D7-6526-01 4 66286191 66286191 T C EPHA5 Missense_Mutation p.I499V 0.39 tolerated(0.14) possibly_damaging(0.881) TCGA-D7-6526-01 4 69094501 69094501 A G TMPRSS11B Silent p.L350L 0.19 TCGA-D7-6526-01 4 83852254 83852254 C A LIN54 Missense_Mutation p.K630N 0.16 deleterious(0) probably_damaging(0.997) TCGA-D7-6526-01 5 135276293 135276293 A G FBXL21 RNA 0.21 TCGA-D7-6526-01 5 137854434 137854434 G A ETF1 Missense_Mutation p.S70L 0.13 deleterious(0.02) probably_damaging(1) TCGA-D7-6526-01 5 140051080 140051080 C T DND1 Missense_Mutation p.R287H 0.25 tolerated(0.13) benign(0.008) TCGA-D7-6526-01 5 140769109 140769109 G A PCDHGB4 Missense_Mutation p.R553H 0.14 deleterious(0.02) benign(0.021) TCGA-D7-6526-01 5 14291233 14291233 C T TRIO Missense_Mutation p.R317W 0.14 probably_damaging(0.922) TCGA-D7-6526-01 5 151234726 151234726 A G GLRA1 Missense_Mutation p.M191T 0.14 tolerated(0.57) benign(0.287) TCGA-D7-6526-01 5 156590152 156590152 G A FAM71B Missense_Mutation p.A375V 0.20 tolerated(1) benign(0.003) TCGA-D7-6526-01 5 156635914 156635914 G A ITK Silent p.L51L 0.20 TCGA-D7-6526-01 5 31983689 31983689 C A PDZD2 Missense_Mutation p.T302N 0.12 tolerated(0.21) benign(0.081) TCGA-D7-6526-01 5 35646909 35646909 A C SPEF2 Missense_Mutation p.E242D 0.34 deleterious(0.01) possibly_damaging(0.684) TCGA-D7-6526-01 5 36197731 36197731 G T NADK2 Missense_Mutation p.P368T 0.15 deleterious(0.01) possibly_damaging(0.874) TCGA-D7-6526-01 5 38448449 38448449 C A EGFLAM Nonsense_Mutation p.Y845* 0.13 TCGA-D7-6526-01 5 39201957 39201957 G A FYB Missense_Mutation p.T379M 0.16 deleterious(0.04) possibly_damaging(0.8) TCGA-D7-6526-01 5 43454123 43454123 T C C5orf28 5'UTR 0.13 TCGA-D7-6526-01 5 73930697 73930697 G T ENC1 Missense_Mutation p.N538K 0.23 tolerated(0.1) probably_damaging(0.982) TCGA-D7-6526-01 5 75932871 75932871 G C IQGAP2 Missense_Mutation p.G598A 0.26 tolerated(0.29) benign(0.403) TCGA-D7-6526-01 6 112460964 112460964 G A LAMA4 Missense_Mutation p.P1034S 0.05 deleterious(0) probably_damaging(0.999) TCGA-D7-6526-01 6 117632273 117632273 C T ROS1 Missense_Mutation p.G2048D 0.17 tolerated(0.19) probably_damaging(0.978) TCGA-D7-6526-01 6 136597399 136597399 T G BCLAF1 Missense_Mutation p.S422R 0.06 tolerated(0.24) benign(0.025) TCGA-D7-6526-01 6 145073047 145073047 C T UTRN Missense_Mutation p.R2772C 0.08 deleterious(0.01) benign(0.146) TCGA-D7-6526-01 6 146350944 146350944 C A GRM1 Silent p.P97P 0.15 TCGA-D7-6526-01 6 152804313 152804313 G A SYNE1 Silent p.Y419Y 0.18 TCGA-D7-6526-01 6 159457507 159457507 G T TAGAP Missense_Mutation p.H516Q 0.30 tolerated(0.16) benign(0.062) TCGA-D7-6526-01 6 160679467 160679467 G T SLC22A2 Missense_Mutation p.A108D 0.14 tolerated(0.22) benign(0.073) TCGA-D7-6526-01 6 27879098 27879098 A C OR2B2 Missense_Mutation p.F334V 0.32 tolerated_low_confidence(0.26) benign(0) TCGA-D7-6526-01 6 27925096 27925097 - CTCC OR2B6 Frame_Shift_Ins p.L28Pfs*85 0.14 TCGA-D7-6526-01 6 30680770 30680770 G A MDC1 Missense_Mutation p.H317Y 0.10 deleterious(0.01) benign(0.221) TCGA-D7-6526-01 6 41774582 41774582 C A USP49 Missense_Mutation p.G47V 0.26 deleterious(0) probably_damaging(1) TCGA-D7-6526-01 6 42987057 42987057 C T KLHDC3 Silent p.A345A 0.11 TCGA-D7-6526-01 6 76072590 76072590 T G FILIP1 Missense_Mutation p.K107T 0.31 tolerated(0.26) benign(0.253) TCGA-D7-6526-01 7 105893567 105893567 G T NAMPT Missense_Mutation p.P421T 0.07 tolerated(0.14) benign(0.037) TCGA-D7-6526-01 7 107542829 107542829 T G DLD Missense_Mutation p.I86M 0.12 tolerated(0.05) possibly_damaging(0.569) TCGA-D7-6526-01 7 108154736 108154736 A C PNPLA8 Missense_Mutation p.I353S 0.24 deleterious(0) benign(0.24) TCGA-D7-6526-01 7 111375153 111375153 C A DOCK4 Silent p.G1783G 0.33 TCGA-D7-6526-01 7 126086390 126086390 T C GRM8 Missense_Mutation p.S823G 0.17 deleterious(0.03) benign(0.052) TCGA-D7-6526-01 7 127950817 127950817 C G RBM28 3'UTR 0.16 TCGA-D7-6526-01 7 143632632 143632632 T G OR2F2 Missense_Mutation p.F103V 0.24 tolerated(0.97) benign(0.016) TCGA-D7-6526-01 7 143807484 143807484 A C OR2A2 Missense_Mutation p.E270A 0.38 deleterious(0.02) benign(0.355) TCGA-D7-6526-01 7 149480254 149480254 C T SSPO RNA 0.47 TCGA-D7-6526-01 7 66773946 66773946 G T STAG3L4 RNA 0.24 TCGA-D7-6526-01 7 7572474 7572474 C G COL28A1 Silent p.L11L 0.21 TCGA-D7-6526-01 7 81331826 81331826 T C HGF 3'UTR 0.11 TCGA-D7-6526-01 7 91972459 91972459 A T ANKIB1 Silent p.P303P 0.08 TCGA-D7-6526-01 8 106573610 106573610 G A ZFPM2 Silent p.Q107Q 0.09 TCGA-D7-6526-01 8 109796429 109796429 G A TMEM74 Missense_Mutation p.A300V 0.58 tolerated(1) benign(0.008) TCGA-D7-6526-01 8 110986286 110986286 C T KCNV1 Missense_Mutation p.R111Q 0.11 tolerated(0.46) benign(0.004) TCGA-D7-6526-01 8 113249424 113249424 A G CSMD3 Missense_Mutation p.L3541P 0.18 deleterious(0) possibly_damaging(0.811) TCGA-D7-6526-01 8 113349775 113349775 C T CSMD3 Missense_Mutation p.E2280K 0.14 deleterious(0.02) possibly_damaging(0.766) TCGA-D7-6526-01 8 43171053 43171053 A G POTEA RNA 0.21 TCGA-D7-6526-01 8 55540286 55540286 C T RP1 Missense_Mutation p.P1282S 0.19 tolerated(0.14) benign(0.01) TCGA-D7-6526-01 8 99006715 99006715 C A MATN2 Missense_Mutation p.D363E 0.09 deleterious(0) possibly_damaging(0.859) TCGA-D7-6526-01 9 101797335 101797335 A - COL15A1 Frame_Shift_Del p.K708Rfs*44 0.16 TCGA-D7-6526-01 9 120474710 120474710 A G TLR4 Missense_Mutation p.S102G 0.07 tolerated(0.17) benign(0.044) TCGA-D7-6526-01 9 122011416 122011416 A T BRINP1 Silent p.R77R 0.24 TCGA-D7-6526-01 9 135942255 135942255 C T CEL Missense_Mutation p.R237W 0.27 deleterious(0) probably_damaging(0.939) TCGA-D7-6526-01 9 139744542 139744542 T C PHPT1 Missense_Mutation p.S80P 0.28 tolerated(0.19) possibly_damaging(0.829) TCGA-D7-6526-01 9 139903860 139903860 G T ABCA2 Silent p.R2263R 0.21 TCGA-D7-6526-01 9 14720054 14720054 T G CER1 3'UTR 0.27 TCGA-D7-6526-01 9 20456715 20456720 TAAACT - MLLT3 In_Frame_Del p.E86_Y88delinsD 0.25 TCGA-D7-6526-01 9 27203086 27203086 T C TEK Silent p.S726S 0.34 TCGA-D7-6526-01 9 33246723 33246723 G A SPINK4 Missense_Mutation p.R71Q 0.12 tolerated(0.24) benign(0.167) TCGA-D7-6526-01 9 35675761 35675761 A T CA9 Missense_Mutation p.D146V 0.07 tolerated(0.18) benign(0.183) TCGA-D7-6526-01 9 72785543 72785543 G C MAMDC2 Silent p.G549G 0.08 TCGA-D7-6526-01 9 84605815 84605815 C A SPATA31D1 Missense_Mutation p.L144M 0.16 deleterious(0.03) possibly_damaging(0.894) TCGA-D7-6526-01 9 91954828 91954828 G A SECISBP2 Missense_Mutation p.R421K 0.16 tolerated(0.2) benign(0.134) TCGA-D7-6526-01 9 98268846 98268846 C T PTCH1 Silent p.L79L 0.27 TCGA-D7-6526-01 X 100075404 100075404 C T CSTF2 5'UTR 0.34 TCGA-D7-6526-01 X 101138598 101138598 T A ZMAT1 Missense_Mutation p.S601C 0.14 deleterious(0.01) possibly_damaging(0.906) TCGA-D7-6526-01 X 107978448 107978448 C T IRS4 Missense_Mutation p.R376H 0.38 deleterious(0) probably_damaging(0.987) TCGA-D7-6526-01 X 108638688 108638688 G A GUCY2F Missense_Mutation p.P769L 0.11 deleterious(0.02) possibly_damaging(0.575) TCGA-D7-6526-01 X 109444244 109444244 C T AMMECR1 Silent p.L275L 0.39 TCGA-D7-6526-01 X 110644397 110644397 A C DCX Missense_Mutation p.F257V 0.09 tolerated(0.13) probably_damaging(0.973) TCGA-D7-6526-01 X 114249023 114249023 T G IL13RA2 Missense_Mutation p.S121R 0.09 deleterious(0) probably_damaging(0.999) TCGA-D7-6526-01 X 120009353 120009353 C T CT47B1 Missense_Mutation p.V58M 0.38 tolerated(0.63) benign(0.011) TCGA-D7-6526-01 X 129629816 129629816 G A RP1-274L7.1 Intron 0.15 TCGA-D7-6526-01 X 135427615 135427615 T G GPR112 Missense_Mutation p.L584V 0.11 deleterious(0) benign(0.176) TCGA-D7-6526-01 X 135738537 135738537 G A CD40LG Silent p.A123A 0.12 TCGA-D7-6526-01 X 146340278 146340278 G A MIR509-2 RNA 0.52 TCGA-D7-6526-01 X 151909301 151909301 G A CSAG1 3'UTR 0.07 TCGA-D7-6526-01 X 31089731 31089731 T C FTHL17 Missense_Mutation p.S114G 0.21 deleterious(0.02) possibly_damaging(0.589) TCGA-D7-6526-01 X 40511086 40511086 A C MED14 Missense_Mutation p.L1446R 0.27 deleterious(0) probably_damaging(0.999) TCGA-D7-6526-01 X 49032441 49032441 G A PRICKLE3 Missense_Mutation p.R477C 0.29 deleterious_low_confidence(0) possibly_damaging(0.855) TCGA-D7-6526-01 X 62570762 62570762 C G SPIN4 5'UTR 0.16 TCGA-D7-6526-01 X 70389196 70389196 G A NLGN3 Missense_Mutation p.R599Q 0.12 tolerated(0.12) benign(0.015) TCGA-D7-6526-01 X 73046140 73046140 A T XIST RNA 0.14 TCGA-D7-6526-01 X 73740839 73740839 C T SLC16A2 Missense_Mutation p.L149F 0.13 deleterious(0) probably_damaging(0.93) TCGA-D7-6526-01 X 75650661 75650661 A G MAGEE1 Missense_Mutation p.S780G 0.14 deleterious(0.03) possibly_damaging(0.767) TCGA-D7-6526-01 X 91456413 91456413 G A PCDH11X Missense_Mutation p.E1025K 0.13 tolerated(0.43) benign(0.002) TCGA-D7-6527-01 10 118116988 118116988 T C CCDC172 Missense_Mutation p.L182P 0.25 deleterious(0.01) probably_damaging(0.969) TCGA-D7-6527-01 10 120796691 120796691 G A EIF3A Nonsense_Mutation p.R1287* 0.34 TCGA-D7-6527-01 10 17113494 17113494 T G CUBN Missense_Mutation p.Q852H 0.14 tolerated(0.17) probably_damaging(0.918) TCGA-D7-6527-01 10 25684866 25684866 C T GPR158 Silent p.F345F 0.20 TCGA-D7-6527-01 10 37486355 37486355 A C ANKRD30A Missense_Mutation p.K832T 0.08 tolerated(0.32) benign(0.009) TCGA-D7-6527-01 10 37505169 37505169 T G ANKRD30A Missense_Mutation p.L921R 0.29 deleterious(0) possibly_damaging(0.902) TCGA-D7-6527-01 10 43088461 43088461 A G ZNF33B Missense_Mutation p.F646S 0.08 deleterious(0) probably_damaging(1) TCGA-D7-6527-01 10 92508669 92508669 G A HTR7 Missense_Mutation p.R408W 0.19 deleterious(0) probably_damaging(0.999) TCGA-D7-6527-01 11 26582734 26582734 T C MUC15 Missense_Mutation p.S322G 0.30 tolerated(0.13) possibly_damaging(0.682) TCGA-D7-6527-01 11 31327864 31327864 A C DCDC1 Missense_Mutation p.L169R 0.29 tolerated(0.3) benign(0.015) TCGA-D7-6527-01 11 5536964 5536964 T C UBQLNL Silent p.Q236Q 0.34 TCGA-D7-6527-01 11 55433005 55433005 C T OR4C6 Silent p.Y121Y 0.23 TCGA-D7-6527-01 11 55594726 55594726 A C OR5L2 Missense_Mutation p.E11A 0.29 deleterious(0.02) benign(0.118) TCGA-D7-6527-01 11 55606858 55606858 A C OR5D16 Missense_Mutation p.S211R 0.24 deleterious(0.01) probably_damaging(0.945) TCGA-D7-6527-01 11 55762007 55762007 A G OR5F1 Missense_Mutation p.L32P 0.29 deleterious(0) possibly_damaging(0.577) TCGA-D7-6527-01 11 56113544 56113544 G C OR8K1 Silent p.T10T 0.29 TCGA-D7-6527-01 11 56345194 56345194 A C OR5M10 Missense_Mutation p.L2V 0.28 tolerated(0.23) benign(0.013) TCGA-D7-6527-01 11 6646065 6646065 G A DCHS1 Missense_Mutation p.A2394V 0.30 tolerated(0.42) benign(0.135) TCGA-D7-6527-01 12 10313422 10313422 T A OLR1 Missense_Mutation p.D176V 0.46 deleterious(0.01) probably_damaging(0.939) TCGA-D7-6527-01 12 10584760 10584760 G A KLRC2 Missense_Mutation p.R177C 0.17 deleterious(0) possibly_damaging(0.74) TCGA-D7-6527-01 12 21627837 21627837 C A RECQL Silent p.V431V 0.28 TCGA-D7-6527-01 12 45568183 45568183 T C PLEKHA8P1 RNA 0.25 TCGA-D7-6527-01 12 72332847 72332847 G A TPH2 Silent p.E27E 0.23 TCGA-D7-6527-01 12 72969063 72969063 A C TRHDE Missense_Mutation p.K675N 0.10 tolerated(0.42) benign(0.001) TCGA-D7-6527-01 12 75804385 75804385 A C GLIPR1L2 Missense_Mutation p.S136R 0.23 deleterious(0) probably_damaging(0.962) TCGA-D7-6527-01 13 19748138 19748138 G C TUBA3C Missense_Mutation p.H406Q 0.10 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-D7-6527-01 13 44455464 44455464 A G LACC1 Missense_Mutation p.M115V 0.75 tolerated(0.13) benign(0.003) TCGA-D7-6527-01 13 46946153 46946153 A C KIAA0226L Missense_Mutation p.I153S 0.11 tolerated(0.46) benign(0.025) TCGA-D7-6527-01 13 78472431 78472431 T - EDNRB Frame_Shift_Del p.K501Nfs*11 0.16 TCGA-D7-6527-01 14 102910107 102910107 G A TECPR2 Missense_Mutation p.R959Q 0.24 deleterious(0) probably_damaging(0.989) TCGA-D7-6527-01 14 20248567 20248567 T C OR4M1 Missense_Mutation p.V29A 0.07 tolerated(0.13) benign(0.004) TCGA-D7-6527-01 14 20389631 20389631 T G OR4K5 Missense_Mutation p.L289R 0.16 deleterious(0) probably_damaging(0.999) TCGA-D7-6527-01 14 24505711 24505711 T G RP11-468E2.9 RNA 0.21 TCGA-D7-6527-01 14 24839461 24839461 G A NFATC4 Missense_Mutation p.R349H 0.41 tolerated(0.33) probably_damaging(0.995) TCGA-D7-6527-01 14 33293932 33293932 A C AKAP6 Missense_Mutation p.N2305H 0.09 deleterious_low_confidence(0.04) benign(0.429) TCGA-D7-6527-01 14 38310789 38310789 C G TTC6 Missense_Mutation p.P1813R 0.20 deleterious(0) probably_damaging(1) TCGA-D7-6527-01 14 44975262 44975262 G A FSCB Missense_Mutation p.A310V 0.28 tolerated(0.23) possibly_damaging(0.564) TCGA-D7-6527-01 14 47120380 47120380 T G RPL10L Missense_Mutation p.K187T 0.25 deleterious(0.02) benign(0.001) TCGA-D7-6527-01 14 67790529 67790529 G A MPP5 Silent p.K617K 0.26 TCGA-D7-6527-01 14 79746659 79746659 C T NRXN3 Intron 0.26 TCGA-D7-6527-01 14 88729593 88729593 G A KCNK10 Missense_Mutation p.R119W 0.25 deleterious(0) possibly_damaging(0.634) TCGA-D7-6527-01 14 91655360 91655360 T G C14orf159 Missense_Mutation p.H347Q 0.29 deleterious(0.01) possibly_damaging(0.885) TCGA-D7-6527-01 15 34028450 34028450 C T RYR3 Missense_Mutation p.S2480F 0.23 possibly_damaging(0.836) TCGA-D7-6527-01 15 40675071 40675071 T G KNSTRN Missense_Mutation p.V12G 0.21 tolerated_low_confidence(0.17) benign(0.003) TCGA-D7-6527-01 15 44813530 44813530 G - CTDSPL2 Frame_Shift_Del p.E421Kfs*13 0.22 TCGA-D7-6527-01 15 99251142 99251142 T A IGF1R Missense_Mutation p.L149H 0.39 deleterious(0) probably_damaging(1) TCGA-D7-6527-01 16 21709177 21709177 C T OTOA Missense_Mutation p.T274M 0.39 tolerated(0.61) benign(0.001) TCGA-D7-6527-01 16 27226219 27226219 G A KDM8 Missense_Mutation p.A268T 0.45 deleterious(0) probably_damaging(0.999) TCGA-D7-6527-01 16 65016134 65016134 T G CDH11 Missense_Mutation p.K357T 0.15 deleterious(0.01) benign(0.223) TCGA-D7-6527-01 16 66972139 66972139 G A CES2 Silent p.P156P 0.12 TCGA-D7-6527-01 16 70208146 70208146 G C CLEC18C 5'UTR 0.16 TCGA-D7-6527-01 17 21318761 21318761 T C KCNJ12 Missense_Mutation p.V36A 0.14 tolerated(0.29) benign(0.009) TCGA-D7-6527-01 17 34493614 34493614 G T TBC1D3B Missense_Mutation p.H471N 0.42 deleterious_low_confidence(0.01) benign(0.274) TCGA-D7-6527-01 17 39305930 39305930 G T KRTAP4-5 Nonsense_Mutation p.C30* 0.18 TCGA-D7-6527-01 17 43196223 43196223 C T PLCD3 Missense_Mutation p.R291H 0.11 tolerated(0.84) benign(0.002) TCGA-D7-6527-01 17 7579585 7579585 G - TP53 Frame_Shift_Del p.L35Cfs*9 0.42 TCGA-D7-6527-01 18 14542810 14542810 G A POTEC Silent p.S112S 0.21 TCGA-D7-6527-01 18 14543009 14543009 G C POTEC Missense_Mutation p.S46C 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.7) TCGA-D7-6527-01 18 21331030 21331030 G A LAMA3 Missense_Mutation p.R278Q 0.20 benign(0.273) TCGA-D7-6527-01 18 31322938 31322938 T C ASXL3 Silent p.S1042S 0.28 TCGA-D7-6527-01 18 3879367 3879379 CTGTGAGGCCGAG - DLGAP1 Frame_Shift_Del p.S231Tfs*14 0.19 TCGA-D7-6527-01 18 44549211 44549211 A G TCEB3CL Missense_Mutation p.L363P 0.02 deleterious(0) probably_damaging(0.973) TCGA-D7-6527-01 18 51013247 51013247 C A DCC Missense_Mutation p.P1273T 0.22 tolerated(0.62) benign(0.05) TCGA-D7-6527-01 19 11685996 11685996 C T ACP5 Silent p.R269R 0.06 TCGA-D7-6527-01 19 15760856 15760856 C T CYP4F3 Missense_Mutation p.R261C 0.34 deleterious(0.03) benign(0.112) TCGA-D7-6527-01 19 18376589 18376589 A G KIAA1683 Silent p.H587H 0.13 TCGA-D7-6527-01 19 22363964 22363964 A C ZNF676 Silent p.T185T 0.33 TCGA-D7-6527-01 19 22847417 22847417 A G ZNF492 Missense_Mutation p.K316E 0.33 deleterious(0.02) benign(0.111) TCGA-D7-6527-01 19 22940468 22940468 A C ZNF99 Missense_Mutation p.L748R 0.34 deleterious(0) probably_damaging(1) TCGA-D7-6527-01 19 29698476 29698476 G A UQCRFS1 Silent p.D268D 0.07 TCGA-D7-6527-01 19 31040275 31040275 A T ZNF536 Missense_Mutation p.K1250M 0.23 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-D7-6527-01 19 36271381 36271381 G A ARHGAP33 Missense_Mutation p.R228Q 0.19 deleterious_low_confidence(0) benign(0.417) TCGA-D7-6527-01 19 36832163 36832163 G C ZFP14 Missense_Mutation p.Q189E 0.27 tolerated(0.31) possibly_damaging(0.895) TCGA-D7-6527-01 19 38056875 38056875 G A ZNF571 Missense_Mutation p.S152L 0.41 tolerated(0.06) benign(0.126) TCGA-D7-6527-01 19 39515852 39515852 G A FBXO27 3'UTR 0.31 TCGA-D7-6527-01 19 49918217 49918217 A C CCDC155 Missense_Mutation p.R446S 0.37 tolerated_low_confidence(0.12) benign(0.144) TCGA-D7-6527-01 19 51462299 51462299 G A KLK6 3'UTR 0.67 TCGA-D7-6527-01 19 52130978 52130978 G C SIGLEC5 Missense_Mutation p.P340R 0.13 deleterious(0) probably_damaging(0.991) TCGA-D7-6527-01 19 54255679 54255679 G A MIR519A1 RNA 0.10 TCGA-D7-6527-01 19 55363480 55363480 C A KIR3DL2 Missense_Mutation p.A33D 0.29 deleterious(0) probably_damaging(0.993) TCGA-D7-6527-01 19 58084932 58084932 T C ZNF416 Missense_Mutation p.T114A 0.32 deleterious(0) benign(0.014) TCGA-D7-6527-01 19 58190208 58190208 C T ZSCAN4 Missense_Mutation p.R413C 0.54 deleterious(0.02) probably_damaging(0.992) TCGA-D7-6527-01 1 102290763 102290763 G A OLFM3 Silent p.I137I 0.11 TCGA-D7-6527-01 1 110527708 110527708 G T AHCYL1 Missense_Mutation p.V12F 0.24 tolerated_low_confidence(0.08) benign(0.011) TCGA-D7-6527-01 1 13001288 13001288 T G PRAMEF6 Missense_Mutation p.K132T 0.15 tolerated(0.58) benign(0.354) TCGA-D7-6527-01 1 152659494 152659494 A G LCE2B Missense_Mutation p.S59G 0.15 tolerated_low_confidence(0.31) unknown(0) TCGA-D7-6527-01 1 152882716 152882716 A C IVL Missense_Mutation p.K148T 0.26 deleterious_low_confidence(0.01) unknown(0) TCGA-D7-6527-01 1 154179928 154179928 G A C1orf43 3'UTR 0.14 TCGA-D7-6527-01 1 156921411 156921411 G A ARHGEF11 Nonsense_Mutation p.R627* 0.21 TCGA-D7-6527-01 1 157804351 157804351 T G CD5L Missense_Mutation p.Q188H 0.18 tolerated(0.26) benign(0.003) TCGA-D7-6527-01 1 158151963 158151963 T C CD1D Missense_Mutation p.L157P 0.20 tolerated(0.28) benign(0.001) TCGA-D7-6527-01 1 158576362 158576362 T G OR10Z1 Missense_Mutation p.I45S 0.18 deleterious(0) probably_damaging(0.991) TCGA-D7-6527-01 1 158576477 158576477 T C OR10Z1 Silent p.S83S 0.16 TCGA-D7-6527-01 1 158651366 158651366 T C SPTA1 Missense_Mutation p.Q161R 0.18 tolerated(0.35) benign(0.41) TCGA-D7-6527-01 1 159023489 159023489 G C IFI16 Missense_Mutation p.R695T 0.06 tolerated(0.18) benign(0.072) TCGA-D7-6527-01 1 159032456 159032456 G C AIM2 3'UTR 0.12 TCGA-D7-6527-01 1 165514020 165514020 C T LRRC52 Nonsense_Mutation p.Q163* 0.22 TCGA-D7-6527-01 1 170965747 170965747 A C MROH9 Missense_Mutation p.E479D 0.04 tolerated(0.07) benign(0.02) TCGA-D7-6527-01 1 176668476 176668476 T G PAPPA2 Missense_Mutation p.L996R 0.11 deleterious(0) probably_damaging(0.992) TCGA-D7-6527-01 1 176708800 176708800 T A PAPPA2 Missense_Mutation p.F1279L 0.09 tolerated(0.74) benign(0.003) TCGA-D7-6527-01 1 186072686 186072686 T G HMCN1 Silent p.A3552A 0.05 TCGA-D7-6527-01 1 196227454 196227454 T C KCNT2 Silent p.K1027K 0.17 TCGA-D7-6527-01 1 196251449 196251449 A C KCNT2 Missense_Mutation p.L912R 0.10 deleterious(0) probably_damaging(0.973) TCGA-D7-6527-01 1 196887413 196887413 T G CFHR4 Nonsense_Mutation p.Y537* 0.23 TCGA-D7-6527-01 1 197021923 197021923 T C F13B Missense_Mutation p.I466V 0.21 tolerated(0.07) benign(0.053) TCGA-D7-6527-01 1 20490553 20490553 G A PLA2G2C Silent p.P127P 0.33 TCGA-D7-6527-01 1 207791438 207791438 C G CR1 Missense_Mutation p.I2304M 0.12 deleterious(0.01) possibly_damaging(0.743) TCGA-D7-6527-01 1 215824071 215824071 C T USH2A Missense_Mutation p.E4736K 0.24 possibly_damaging(0.806) TCGA-D7-6527-01 1 216258110 216258110 T G USH2A Missense_Mutation p.Q1699H 0.15 benign(0.009) TCGA-D7-6527-01 1 227081737 227081737 A G PSEN2 Missense_Mutation p.I368V 0.15 tolerated(0.06) possibly_damaging(0.699) TCGA-D7-6527-01 1 240555817 240555817 T G FMN2 Missense_Mutation p.I1622S 0.15 benign(0.127) TCGA-D7-6527-01 1 248129071 248129071 T G OR2AK2 Missense_Mutation p.H146Q 0.18 deleterious(0.04) possibly_damaging(0.459) TCGA-D7-6527-01 1 248129218 248129218 A G OR2AK2 Silent p.E195E 0.15 TCGA-D7-6527-01 1 248309375 248309375 A G OR2M5 Missense_Mutation p.K309R 0.11 tolerated(0.53) benign(0.071) TCGA-D7-6527-01 1 248343833 248343833 T G OR2M2 Silent p.P182P 0.17 TCGA-D7-6527-01 1 248487102 248487102 A C OR2M7 Missense_Mutation p.F257V 0.09 deleterious(0.03) probably_damaging(0.994) TCGA-D7-6527-01 1 248525883 248525883 A G OR2T4 Missense_Mutation p.K334R 0.11 tolerated(0.93) benign(0.011) TCGA-D7-6527-01 1 248637137 248637137 G T OR2T3 Missense_Mutation p.L162F 0.07 tolerated(1) benign(0.028) TCGA-D7-6527-01 1 39907918 39907918 G C MACF1 Missense_Mutation p.D4233H 0.29 probably_damaging(1) TCGA-D7-6527-01 1 75596421 75596421 A C LHX8 Intron 0.33 TCGA-D7-6527-01 1 75672255 75672255 T G SLC44A5 3'UTR 0.30 TCGA-D7-6527-01 20 21687401 21687401 C T PAX1 Silent p.G204G 0.14 TCGA-D7-6527-01 20 29632656 29632656 A C FRG1B Missense_Mutation p.K157N 0.02 deleterious(0.04) possibly_damaging(0.77) TCGA-D7-6527-01 20 29960728 29960728 G T DEFB118 Missense_Mutation p.A43S 0.21 deleterious(0.05) probably_damaging(0.918) TCGA-D7-6527-01 20 44695694 44695694 T C NCOA5 Missense_Mutation p.K210R 0.28 tolerated(0.54) possibly_damaging(0.517) TCGA-D7-6527-01 20 52198276 52198276 C T ZNF217 Missense_Mutation p.D364N 0.03 deleterious(0.03) possibly_damaging(0.798) TCGA-D7-6527-01 20 52198327 52198327 C G ZNF217 Missense_Mutation p.E347Q 0.03 deleterious(0.03) benign(0.094) TCGA-D7-6527-01 20 6064684 6064684 C T FERMT1 Intron 0.18 TCGA-D7-6527-01 21 10952958 10952958 T C TPTE Missense_Mutation p.K80R 0.19 tolerated(0.18) possibly_damaging(0.582) TCGA-D7-6527-01 21 15858241 15858241 T G SAMSN1 Missense_Mutation p.S440R 0.05 deleterious_low_confidence(0) possibly_damaging(0.754) TCGA-D7-6527-01 21 17962589 17962589 T G MIR125B2 RNA 0.11 TCGA-D7-6527-01 21 27264118 27264118 A G APP Silent p.G709G 0.23 TCGA-D7-6527-01 21 28304387 28304387 G A ADAMTS5 Missense_Mutation p.A662V 0.40 deleterious(0.02) benign(0.049) TCGA-D7-6527-01 22 50659547 50659547 C T TUBGCP6 Missense_Mutation p.G1081R 0.27 tolerated(0.05) possibly_damaging(0.672) TCGA-D7-6527-01 2 128335741 128335741 G A MYO7B Missense_Mutation p.A295T 0.42 tolerated(0.09) benign(0.021) TCGA-D7-6527-01 2 145156170 145156170 A C ZEB2 Missense_Mutation p.L862V 0.22 deleterious(0) possibly_damaging(0.584) TCGA-D7-6527-01 2 152331523 152331523 A G RIF1 Missense_Mutation p.N2453D 0.18 tolerated(0.08) possibly_damaging(0.751) TCGA-D7-6527-01 2 166172074 166172074 T G SCN2A Missense_Mutation p.L493V 0.06 deleterious(0.05) possibly_damaging(0.67) TCGA-D7-6527-01 2 179422434 179422434 T G TTN Missense_Mutation p.N29216T 0.03 TCGA-D7-6527-01 2 179426489 179426489 C T TTN Missense_Mutation p.E28124K 0.81 TCGA-D7-6527-01 2 179587167 179587167 T G TTN Missense_Mutation p.Q7449H 0.15 TCGA-D7-6527-01 2 180011150 180011150 G A SESTD1 Missense_Mutation p.P206S 0.13 deleterious(0) possibly_damaging(0.787) TCGA-D7-6527-01 2 181846772 181846772 G A UBE2E3 Translation_Start_Site p.M1? 0.25 tolerated_low_confidence(0.08) benign(0.019) TCGA-D7-6527-01 2 185731152 185731152 T - ZNF804A Frame_Shift_Del p.Y58Tfs*33 0.24 TCGA-D7-6527-01 2 185802610 185802610 A C ZNF804A Missense_Mutation p.K829N 0.23 tolerated(0.09) benign(0.329) TCGA-D7-6527-01 2 196774920 196774920 C G DNAH7 Splice_Site p.X1312_splice 0.11 TCGA-D7-6527-01 2 197086947 197086947 T G HECW2 Missense_Mutation p.E1378D 0.17 deleterious(0.04) benign(0.21) TCGA-D7-6527-01 2 198352641 198352641 C T HSPD1 Missense_Mutation p.D504N 0.13 tolerated(0.31) benign(0.252) TCGA-D7-6527-01 2 198949915 198949915 A C PLCL1 Missense_Mutation p.E558D 0.08 tolerated(0.12) possibly_damaging(0.473) TCGA-D7-6527-01 2 204820607 204820607 C A ICOS Missense_Mutation p.H103N 0.06 deleterious(0.01) possibly_damaging(0.888) TCGA-D7-6527-01 2 207174274 207174274 T C ZDBF2 Silent p.H1674H 0.12 TCGA-D7-6527-01 2 21231570 21231570 G T APOB Missense_Mutation p.P2724T 0.35 probably_damaging(0.997) TCGA-D7-6527-01 2 79384298 79384298 T C REG3A 3'UTR 0.09 TCGA-D7-6527-01 2 89049502 89049502 G T RPIA Silent p.V281V 0.33 TCGA-D7-6527-01 2 89100708 89100708 A G ANKRD36BP2 RNA 0.35 TCGA-D7-6527-01 2 99251709 99251709 A C MGAT4A Missense_Mutation p.L482V 0.14 tolerated(0.13) benign(0.007) TCGA-D7-6527-01 3 108572596 108572596 G T TRAT1 Missense_Mutation p.A145S 0.23 tolerated(0.21) benign(0.311) TCGA-D7-6527-01 3 118621778 118621780 AGA - IGSF11 In_Frame_Del p.S295del 0.26 TCGA-D7-6527-01 3 121591406 121591406 A C EAF2 Silent p.L169L 0.16 TCGA-D7-6527-01 3 1269539 1269539 A C CNTN6 Missense_Mutation p.S74R 0.13 tolerated(0.07) possibly_damaging(0.661) TCGA-D7-6527-01 3 127339719 127339719 G A MCM2 Missense_Mutation p.R815H 0.22 deleterious(0.03) possibly_damaging(0.775) TCGA-D7-6527-01 3 1415424 1415424 G A CNTN6 Silent p.V641V 0.39 TCGA-D7-6527-01 3 15643304 15643304 C G BTD 5'UTR 0.20 TCGA-D7-6527-01 3 170078371 170078371 C T SKIL Silent p.P84P 0.22 TCGA-D7-6527-01 3 174814787 174814787 T G NAALADL2 Missense_Mutation p.L84R 0.08 deleterious(0) possibly_damaging(0.907) TCGA-D7-6527-01 3 186954073 186954073 G A MASP1 Missense_Mutation p.S529L 0.20 tolerated(0.26) benign(0.002) TCGA-D7-6527-01 3 190986175 190986175 T G UTS2B 3'UTR 0.20 TCGA-D7-6527-01 3 24001267 24001267 C T NR1D2 Missense_Mutation p.R160C 0.16 deleterious(0) probably_damaging(0.999) TCGA-D7-6527-01 3 361419 361419 A C CHL1 5'UTR 0.09 TCGA-D7-6527-01 3 36887808 36887808 G A TRANK1 Missense_Mutation p.R1664W 0.24 deleterious(0) probably_damaging(0.999) TCGA-D7-6527-01 3 38539262 38539262 G A EXOG Silent p.K102K 0.10 TCGA-D7-6527-01 3 38592796 38592796 G A SCN5A Silent p.D1689D 0.13 TCGA-D7-6527-01 3 38938681 38938681 A C SCN11A Silent p.T686T 0.18 TCGA-D7-6527-01 3 39162529 39162529 C T TTC21A Silent p.F322F 0.35 TCGA-D7-6527-01 3 39162565 39162565 C G TTC21A Silent p.V334V 0.35 TCGA-D7-6527-01 3 39162590 39162590 C G TTC21A Missense_Mutation p.L343V 0.32 tolerated(0.1) benign(0.089) TCGA-D7-6527-01 3 423943 423943 A C CHL1 Missense_Mutation p.D653A 0.05 deleterious(0.05) benign(0.012) TCGA-D7-6527-01 3 49052400 49052400 G A WDR6 Silent p.E1045E 0.44 TCGA-D7-6527-01 3 49052464 49052464 G T WDR6 Nonsense_Mutation p.E1067* 0.35 TCGA-D7-6527-01 3 54603875 54603875 C T CACNA2D3 Nonsense_Mutation p.R244* 0.54 TCGA-D7-6527-01 3 56605277 56605277 T C CCDC66 Missense_Mutation p.S295P 0.28 tolerated(0.52) benign(0.005) TCGA-D7-6527-01 3 69075185 69075185 C T TMF1 Missense_Mutation p.V941I 0.22 tolerated(0.42) benign(0.002) TCGA-D7-6527-01 3 89462402 89462402 A C EPHA3 Missense_Mutation p.K625T 0.49 deleterious(0.02) benign(0.001) TCGA-D7-6527-01 3 97202873 97202873 A G EPHA6 Missense_Mutation p.R724G 0.28 tolerated(0.31) possibly_damaging(0.679) TCGA-D7-6527-01 4 10445604 10445604 G A ZNF518B Silent p.S783S 0.43 TCGA-D7-6527-01 4 114176918 114176918 G T ANK2 Missense_Mutation p.A340S 0.34 possibly_damaging(0.599) TCGA-D7-6527-01 4 122739317 122739317 G C CCNA2 Missense_Mutation p.R378G 0.10 tolerated(0.35) benign(0.059) TCGA-D7-6527-01 4 122774116 122774116 C G BBS7 Missense_Mutation p.D282H 0.09 tolerated(0.14) benign(0.435) TCGA-D7-6527-01 4 123161001 123161001 G A KIAA1109 Missense_Mutation p.M1388I 0.37 benign(0.002) TCGA-D7-6527-01 4 138451176 138451176 A G PCDH18 Silent p.T689T 0.08 TCGA-D7-6527-01 4 156136287 156136287 A C NPY2R 3'UTR 0.21 TCGA-D7-6527-01 4 156632253 156632253 A G GUCY1A3 Silent p.R312R 0.14 TCGA-D7-6527-01 4 162697220 162697220 T C FSTL5 Missense_Mutation p.K139R 0.27 tolerated(0.5) benign(0) TCGA-D7-6527-01 4 20258306 20258306 G A SLIT2 Missense_Mutation p.G64E 0.20 deleterious(0.04) possibly_damaging(0.805) TCGA-D7-6527-01 4 20525501 20525501 T G SLIT2 Missense_Mutation p.S417A 0.15 tolerated(1) benign(0.002) TCGA-D7-6527-01 4 2695327 2695327 G A FAM193A Missense_Mutation p.G649S 0.12 tolerated(0.35) benign(0.045) TCGA-D7-6527-01 4 47647108 47647108 C T CORIN Silent p.E649E 0.22 TCGA-D7-6527-01 4 47647114 47647114 C A CORIN Missense_Mutation p.M647I 0.21 tolerated(0.45) benign(0.027) TCGA-D7-6527-01 4 56301504 56301504 C G CLOCK 3'UTR 0.10 TCGA-D7-6527-01 4 73186470 73186470 A C ADAMTS3 Missense_Mutation p.F355V 0.45 deleterious(0) possibly_damaging(0.897) TCGA-D7-6527-01 4 87685813 87685813 A C PTPN13 Missense_Mutation p.K1362T 0.47 deleterious(0) probably_damaging(0.925) TCGA-D7-6527-01 4 96470095 96470095 G T UNC5C 5'UTR 0.07 TCGA-D7-6527-01 5 100192067 100192067 T A ST8SIA4 Silent p.A179A 0.38 TCGA-D7-6527-01 5 136324212 136324212 T G SPOCK1 Missense_Mutation p.K276T 0.11 deleterious(0) probably_damaging(0.999) TCGA-D7-6527-01 5 140590324 140590324 C T PCDHB12 Silent p.F615F 0.20 TCGA-D7-6527-01 5 140794089 140794089 C T PCDHGA10 Silent p.I449I 0.03 TCGA-D7-6527-01 5 172590860 172590860 C T BNIP1 Missense_Mutation p.A251V 0.19 deleterious(0) probably_damaging(0.992) TCGA-D7-6527-01 5 19721530 19721530 G A CDH18 Missense_Mutation p.T190I 0.07 deleterious(0) probably_damaging(0.997) TCGA-D7-6527-01 5 24498534 24498534 A G CDH10 Silent p.F496F 0.12 TCGA-D7-6527-01 5 35704684 35704684 C T SPEF2 Silent p.H809H 0.13 TCGA-D7-6527-01 5 38370543 38370543 A G EGFLAM Missense_Mutation p.S231G 0.11 tolerated_low_confidence(0.06) possibly_damaging(0.643) TCGA-D7-6527-01 5 44813250 44813250 T G MRPS30 Missense_Mutation p.F299C 0.13 deleterious(0) probably_damaging(0.998) TCGA-D7-6527-01 5 86629108 86629108 C T RASA1 Nonsense_Mutation p.R285* 0.17 TCGA-D7-6527-01 6 127899908 127899910 TGG - C6orf58 In_Frame_Del p.W128del 0.19 TCGA-D7-6527-01 6 162206827 162206827 A C PARK2 Missense_Mutation p.L283R 0.10 tolerated(0.1) possibly_damaging(0.83) TCGA-D7-6527-01 6 27775400 27775400 G C HIST1H2BL Missense_Mutation p.I95M 0.38 deleterious_low_confidence(0.01) probably_damaging(0.939) TCGA-D7-6527-01 6 27783251 27783251 C G HIST1H2BM 3'UTR 0.11 TCGA-D7-6527-01 6 28227548 28227548 G A NKAPL Silent p.A133A 0.19 TCGA-D7-6527-01 6 46659618 46659618 T G TDRD6 Missense_Mutation p.F1251L 0.22 tolerated(0.7) benign(0.001) TCGA-D7-6527-01 6 50682950 50682950 A T TFAP2D Missense_Mutation p.E54V 0.14 deleterious(0.04) benign(0.025) TCGA-D7-6527-01 6 52661050 52661050 T C GSTA1 Missense_Mutation p.T68A 0.42 deleterious(0.03) benign(0.11) TCGA-D7-6527-01 6 69653787 69653787 A C BAI3 Silent p.R366R 0.25 TCGA-D7-6527-01 6 73830234 73830234 A T KCNQ5 Missense_Mutation p.E385V 0.23 deleterious(0.05) benign(0.027) TCGA-D7-6527-01 6 73900325 73900325 A G KCNQ5 Missense_Mutation p.K555R 0.26 tolerated(0.09) probably_damaging(0.98) TCGA-D7-6527-01 6 75865381 75865381 A C COL12A1 Missense_Mutation p.L1147R 0.14 probably_damaging(0.999) TCGA-D7-6527-01 7 113518863 113518863 T G PPP1R3A Missense_Mutation p.S762R 0.24 deleterious(0.01) probably_damaging(0.938) TCGA-D7-6527-01 7 120876821 120876821 T G CPED1 Silent p.S703S 0.16 TCGA-D7-6527-01 7 136700337 136700337 A G CHRM2 Missense_Mutation p.K242R 0.30 tolerated(0.3) benign(0.05) TCGA-D7-6527-01 7 13971158 13971158 T G ETV1 Missense_Mutation p.K257N 0.12 deleterious(0) probably_damaging(0.983) TCGA-D7-6527-01 7 143701562 143701562 C T OR6B1 Missense_Mutation p.A158V 0.19 tolerated(0.7) benign(0.017) TCGA-D7-6527-01 7 148876198 148876198 A C ZNF398 Silent p.R412R 0.16 TCGA-D7-6527-01 7 151181842 151181842 A C RHEB Missense_Mutation p.L58R 0.21 deleterious(0) probably_damaging(0.997) TCGA-D7-6527-01 7 20371449 20371450 - T ITGB8 Frame_Shift_Ins p.T10Yfs*34 0.26 TCGA-D7-6527-01 7 30092397 30092397 G A PLEKHA8 Missense_Mutation p.M237I 0.26 tolerated(0.8) benign(0) TCGA-D7-6527-01 7 4008964 4008964 C T SDK1 Missense_Mutation p.A541V 0.53 deleterious(0.02) benign(0.009) TCGA-D7-6527-01 7 48411843 48411843 A C ABCA13 Missense_Mutation p.S3628R 0.14 probably_damaging(0.999) TCGA-D7-6527-01 7 56171922 56171922 G T CHCHD2 Nonsense_Mutation p.Y99* 0.14 TCGA-D7-6527-01 7 62752683 62752683 C A ZNF733P RNA 0.13 TCGA-D7-6527-01 7 69064894 69064894 G C AUTS2 Missense_Mutation p.E85D 0.12 deleterious(0) probably_damaging(0.953) TCGA-D7-6527-01 7 75167410 75167410 G T HIP1 3'UTR 0.04 TCGA-D7-6527-01 7 81746366 81746366 C T CACNA2D1 Missense_Mutation p.E174K 0.16 tolerated(0.94) possibly_damaging(0.716) TCGA-D7-6527-01 7 82544696 82544696 T G PCLO Missense_Mutation p.K4202N 0.25 unknown(0) TCGA-D7-6527-01 7 88964949 88964949 A G ZNF804B Missense_Mutation p.K885E 0.29 deleterious(0.04) possibly_damaging(0.713) TCGA-D7-6527-01 7 99459298 99459298 G A CYP3A43 Silent p.T363T 0.25 TCGA-D7-6527-01 8 133150175 133150175 C T KCNQ3 Missense_Mutation p.G553R 0.30 deleterious(0) probably_damaging(0.977) TCGA-D7-6527-01 8 19218776 19218776 G A SH2D4A Silent p.T219T 0.22 TCGA-D7-6527-01 8 2807839 2807839 A C CSMD1 Missense_Mutation p.L3410V 0.20 probably_damaging(0.982) TCGA-D7-6527-01 8 42620260 42620260 G C CHRNA6 Missense_Mutation p.S56C 0.22 deleterious(0) probably_damaging(0.984) TCGA-D7-6527-01 8 69046292 69046292 A T PREX2 Splice_Site p.X1256_splice 0.27 TCGA-D7-6527-01 8 69069558 69069558 A T PREX2 Silent p.A1411A 0.17 TCGA-D7-6527-01 8 70744764 70744764 T C SLCO5A1 Missense_Mutation p.S49G 0.33 tolerated_low_confidence(0.38) benign(0) TCGA-D7-6527-01 8 77620259 77620259 C G ZFHX4 Missense_Mutation p.H1023Q 0.15 possibly_damaging(0.555) TCGA-D7-6527-01 9 118949522 118949522 C T PAPPA Missense_Mutation p.R169C 0.30 deleterious(0.01) possibly_damaging(0.898) TCGA-D7-6527-01 9 120475722 120475722 A C TLR4 Missense_Mutation p.E439A 0.19 tolerated(0.62) benign(0.006) TCGA-D7-6527-01 9 121929271 121929271 A C BRINP1 3'UTR 0.16 TCGA-D7-6527-01 9 137778358 137778358 C T FCN2 Silent p.D214D 0.31 TCGA-D7-6527-01 9 139747813 139747813 C T MAMDC4 Silent p.D77D 0.25 TCGA-D7-6527-01 9 21227998 21227998 A G IFNA17 Missense_Mutation p.F59L 0.15 deleterious(0) probably_damaging(0.925) TCGA-D7-6527-01 9 35661081 35661081 G A CCDC107 Missense_Mutation p.R250Q 0.22 deleterious_low_confidence(0) probably_damaging(0.947) TCGA-D7-6527-01 9 8500770 8500770 A G PTPRD Silent p.I704I 0.10 TCGA-D7-6527-01 X 100242442 100242442 C T ARL13A Missense_Mutation p.R184C 0.51 deleterious(0.05) probably_damaging(0.996) TCGA-D7-6527-01 X 108785790 108785790 A C NXT2 Missense_Mutation p.K156T 0.32 deleterious(0.03) probably_damaging(0.996) TCGA-D7-6527-01 X 122319754 122319754 C T GRIA3 Silent p.T60T 0.09 TCGA-D7-6527-01 X 138630607 138630607 G C F9 Missense_Mutation p.E159D 0.48 tolerated(0.52) benign(0.001) TCGA-D7-6527-01 X 144904233 144904233 G A SLITRK2 Missense_Mutation p.G97E 0.39 tolerated(1) benign(0.003) TCGA-D7-6527-01 X 147088344 147088344 T G FMR1NB Missense_Mutation p.F174V 0.10 deleterious(0) possibly_damaging(0.504) TCGA-D7-6527-01 X 151092883 151092883 A C MAGEA4 Missense_Mutation p.Q249H 0.35 tolerated(0.15) benign(0.05) TCGA-D7-6527-01 X 15593858 15593858 T G ACE2 Missense_Mutation p.K458T 0.56 tolerated(0.06) possibly_damaging(0.726) TCGA-D7-6527-01 X 30326665 30326665 C T NR0B1 Silent p.L272L 0.50 TCGA-D7-6527-01 X 41075642 41075642 G A USP9X Missense_Mutation p.R1941H 0.86 deleterious(0) probably_damaging(0.963) TCGA-D7-6527-01 X 66765865 66765865 T C AR Missense_Mutation p.S293P 0.28 tolerated_low_confidence(0.14) benign(0.006) TCGA-D7-6527-01 X 70375090 70375090 G A NLGN3 Missense_Mutation p.V202I 0.10 deleterious(0) possibly_damaging(0.884) TCGA-D7-6527-01 X 73961616 73961616 T G KIAA2022 Missense_Mutation p.N926H 0.20 deleterious(0.01) possibly_damaging(0.652) TCGA-D7-6527-01 X 86919826 86919826 T G KLHL4 Missense_Mutation p.V663G 0.27 deleterious(0) probably_damaging(0.952) TCGA-D7-6527-01 X 95993746 95993746 C A DIAPH2 Silent p.L109L 0.32 TCGA-D7-6528-01 10 101595995 101595995 G A ABCC2 Missense_Mutation p.V1188M 0.09 tolerated(0.12) benign(0.027) TCGA-D7-6528-01 10 103870449 103870449 C T LDB1 Missense_Mutation p.R121Q 0.53 deleterious(0) possibly_damaging(0.589) TCGA-D7-6528-01 10 120896041 120896041 C T FAM45A Missense_Mutation p.S319L 0.40 tolerated(0.27) benign(0.002) TCGA-D7-6528-01 10 126301905 126301905 G A LHPP Silent p.L263L 0.34 TCGA-D7-6528-01 10 135372434 135372434 T C SYCE1 Missense_Mutation p.D73G 0.09 deleterious(0) benign(0.228) TCGA-D7-6528-01 10 15650283 15650283 A C ITGA8 Silent p.S520S 0.20 TCGA-D7-6528-01 10 17277380 17277380 G T VIM Missense_Mutation p.E407D 0.18 deleterious(0) possibly_damaging(0.672) TCGA-D7-6528-01 10 29599960 29599960 A C LYZL1 Missense_Mutation p.E186A 0.53 tolerated(0.05) benign(0.096) TCGA-D7-6528-01 10 31810825 31810825 A G ZEB1 Silent p.Q855Q 0.11 TCGA-D7-6528-01 10 50122031 50122031 A C LRRC18 Missense_Mutation p.L57R 0.05 deleterious(0) probably_damaging(0.995) TCGA-D7-6528-01 10 51465608 51465608 G A AGAP7 Missense_Mutation p.T283I 0.41 deleterious(0) probably_damaging(0.989) TCGA-D7-6528-01 10 54074118 54074118 G A DKK1 5'UTR 0.06 TCGA-D7-6528-01 10 54074383 54074383 G A DKK1 Silent p.A63A 0.11 TCGA-D7-6528-01 10 61112135 61112135 G A FAM13C Silent p.T73T 0.45 TCGA-D7-6528-01 10 73051239 73051239 G A UNC5B Missense_Mutation p.A449T 0.64 tolerated(0.69) probably_damaging(0.93) TCGA-D7-6528-01 10 73498303 73498303 T G CDH23 Missense_Mutation p.F1425V 0.24 tolerated(0.93) benign(0.068) TCGA-D7-6528-01 10 97915980 97915980 A G ZNF518A RNA 0.53 TCGA-D7-6528-01 11 103175338 103175338 A C DYNC2H1 Missense_Mutation p.Q3764H 0.13 possibly_damaging(0.509) TCGA-D7-6528-01 11 104900547 104900547 G A CASP1 Missense_Mutation p.S236F 0.09 deleterious(0) probably_damaging(1) TCGA-D7-6528-01 11 105881326 105881326 G C MSANTD4 Missense_Mutation p.L107V 0.17 tolerated(0.95) benign(0.007) TCGA-D7-6528-01 11 107925631 107925631 A T CUL5 Missense_Mutation p.K243N 0.28 tolerated(0.49) benign(0.079) TCGA-D7-6528-01 11 108380425 108380425 T C EXPH5 Missense_Mutation p.S1937G 0.35 tolerated(0.07) benign(0.036) TCGA-D7-6528-01 11 111724443 111724443 C T ALG9 Missense_Mutation p.D69N 0.15 deleterious(0) probably_damaging(1) TCGA-D7-6528-01 11 11394149 11394149 A G GALNT18 Silent p.I335I 0.41 TCGA-D7-6528-01 11 115109343 115109343 T G CADM1 Missense_Mutation p.N101H 0.06 tolerated(0.07) benign(0.115) TCGA-D7-6528-01 11 118083275 118083275 A G AMICA1 Silent p.D15D 0.15 TCGA-D7-6528-01 11 120169080 120169080 T A POU2F3 Missense_Mutation p.L82Q 0.04 deleterious(0.02) benign(0.07) TCGA-D7-6528-01 11 122817501 122817501 G C C11orf63 Splice_Site p.X643_splice 0.19 TCGA-D7-6528-01 11 123811129 123811129 A C OR4D5 Missense_Mutation p.K269T 0.04 tolerated(0.07) probably_damaging(0.998) TCGA-D7-6528-01 11 124135362 124135362 T C OR8G5 Missense_Mutation p.C214R 0.04 deleterious(0) probably_damaging(1) TCGA-D7-6528-01 11 124252930 124252930 A C OR8B2 Missense_Mutation p.F104V 0.17 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-D7-6528-01 11 124294715 124294715 G C OR8B4 Nonsense_Mutation p.S18* 0.15 TCGA-D7-6528-01 11 22248854 22248854 G A ANO5 Missense_Mutation p.E124K 0.14 tolerated(0.63) probably_damaging(0.993) TCGA-D7-6528-01 11 22381048 22381048 T G SLC17A6 Missense_Mutation p.V183G 0.19 deleterious(0) possibly_damaging(0.908) TCGA-D7-6528-01 11 22833429 22833429 G A GAS2 Missense_Mutation p.R270Q 0.19 tolerated(0.21) probably_damaging(1) TCGA-D7-6528-01 11 26620487 26620487 A G ANO3 Missense_Mutation p.Q538R 0.06 tolerated(0.36) probably_damaging(0.997) TCGA-D7-6528-01 11 26692571 26692571 A C SLC5A12 3'UTR 0.31 TCGA-D7-6528-01 11 49831409 49831409 T C RP11-707M1.1 RNA 0.52 TCGA-D7-6528-01 11 49974148 49974148 C A OR4C13 Nonsense_Mutation p.Y58* 0.19 TCGA-D7-6528-01 11 51412114 51412114 A C OR4A5 Silent p.G94G 0.35 TCGA-D7-6528-01 11 5344612 5344612 A G OR51B2 Missense_Mutation p.S306P 0.38 tolerated(0.05) possibly_damaging(0.474) TCGA-D7-6528-01 11 56258219 56258219 G C OR5M8 Missense_Mutation p.L210V 0.53 tolerated(0.05) benign(0.438) TCGA-D7-6528-01 11 57004241 57004241 C A APLNR Missense_Mutation p.V80L 0.43 deleterious(0.05) benign(0.192) TCGA-D7-6528-01 11 5757774 5757774 A G OR56B1 Missense_Mutation p.I10V 0.36 tolerated(0.7) benign(0) TCGA-D7-6528-01 11 5809861 5809861 A T OR52N1 Nonsense_Mutation p.Y62* 0.41 TCGA-D7-6528-01 11 6416828 6416828 C T APBB1 Missense_Mutation p.R688H 0.48 deleterious(0) probably_damaging(0.909) TCGA-D7-6528-01 11 7060049 7060049 A C NLRP14 Missense_Mutation p.I78L 0.08 tolerated(0.17) benign(0.014) TCGA-D7-6528-01 11 85445318 85445318 G A SYTL2 Missense_Mutation p.R351W 0.06 deleterious(0) possibly_damaging(0.677) TCGA-D7-6528-01 11 92531644 92531644 A C FAT3 Missense_Mutation p.K1822T 0.10 benign(0.023) TCGA-D7-6528-01 12 101759288 101759288 T G UTP20 Missense_Mutation p.L2004V 0.19 deleterious(0.01) possibly_damaging(0.887) TCGA-D7-6528-01 12 10954529 10954529 C T TAS2R7 Missense_Mutation p.R214Q 0.10 tolerated(1) benign(0.005) TCGA-D7-6528-01 12 109637357 109637357 G A ACACB Silent p.E926E 0.17 TCGA-D7-6528-01 12 112460298 112460298 T G ERP29 Missense_Mutation p.L210V 0.18 tolerated(0.16) benign(0.012) TCGA-D7-6528-01 12 113705654 113705654 G A TPCN1 Missense_Mutation p.A213T 0.59 tolerated(0.22) benign(0.178) TCGA-D7-6528-01 12 123812541 123812541 A C SBNO1 Missense_Mutation p.L444V 0.08 tolerated(0.13) benign(0.308) TCGA-D7-6528-01 12 12967079 12967079 G C DDX47 Silent p.V34V 0.05 TCGA-D7-6528-01 12 14958991 14958991 T G SMCO3 Missense_Mutation p.K208N 0.37 tolerated(0.05) benign(0.005) TCGA-D7-6528-01 12 21958148 21958148 T G ABCC9 Intron 0.15 TCGA-D7-6528-01 12 46322668 46322669 - C SCAF11 Intron 0.36 TCGA-D7-6528-01 12 48723523 48723523 C T H1FNT Missense_Mutation p.A150V 0.43 tolerated(0.56) possibly_damaging(0.695) TCGA-D7-6528-01 12 49259624 49259624 T C RND1 5'UTR 0.33 TCGA-D7-6528-01 12 50794697 50794697 A C LARP4 5'UTR 0.19 TCGA-D7-6528-01 12 52908759 52908759 G A KRT5 Silent p.T580T 0.24 TCGA-D7-6528-01 12 53233611 53233611 G A KRT78 Missense_Mutation p.T402M 0.27 tolerated(0.06) benign(0.259) TCGA-D7-6528-01 12 54914575 54914575 T G NCKAP1L Missense_Mutation p.F575V 0.06 deleterious(0) probably_damaging(0.989) TCGA-D7-6528-01 12 6080778 6080778 G T VWF Missense_Mutation p.S2512Y 0.29 deleterious(0.02) possibly_damaging(0.831) TCGA-D7-6528-01 12 657427 657427 A T B4GALNT3 Missense_Mutation p.T273S 0.21 tolerated(0.42) benign(0.052) TCGA-D7-6528-01 12 7177878 7177878 C G C1S Missense_Mutation p.L664V 0.12 tolerated(1) benign(0.052) TCGA-D7-6528-01 12 8758006 8758006 C T AICDA Missense_Mutation p.V78I 0.34 tolerated(0.32) benign(0.026) TCGA-D7-6528-01 12 9254148 9254148 G A A2M Silent p.P463P 0.20 TCGA-D7-6528-01 12 95397430 95397430 G C NDUFA12 Silent p.R9R 0.41 TCGA-D7-6528-01 12 98927559 98927559 A G TMPO Silent p.Q508Q 0.13 TCGA-D7-6528-01 12 9994946 9994946 A C KLRF1 Missense_Mutation p.Q168H 0.23 deleterious(0.02) possibly_damaging(0.451) TCGA-D7-6528-01 13 110831661 110831661 T C COL4A1 Silent p.G767G 0.08 TCGA-D7-6528-01 13 114290350 114290350 G A TFDP1 Missense_Mutation p.R249Q 0.22 tolerated(0.75) benign(0.006) TCGA-D7-6528-01 13 23905608 23905608 A C SACS Missense_Mutation p.L4136R 0.42 probably_damaging(0.996) TCGA-D7-6528-01 13 25262594 25262594 C T ATP12A Silent p.G122G 0.20 TCGA-D7-6528-01 13 32376379 32376379 A C RXFP2 Missense_Mutation p.K701T 0.17 tolerated(0.25) benign(0.064) TCGA-D7-6528-01 13 33859652 33859652 T G STARD13 Missense_Mutation p.S42R 0.42 tolerated(0.16) possibly_damaging(0.616) TCGA-D7-6528-01 13 52439824 52439824 G A CCDC70 Missense_Mutation p.E104K 0.10 deleterious(0.03) probably_damaging(0.998) TCGA-D7-6528-01 13 58299162 58299162 T A PCDH17 Missense_Mutation p.L1072M 0.49 tolerated_low_confidence(0.09) benign(0.006) TCGA-D7-6528-01 13 76427387 76427387 G A LMO7 Silent p.R1275R 0.14 TCGA-D7-6528-01 13 78492700 78492700 C T EDNRB Silent p.P93P 0.46 TCGA-D7-6528-01 13 79940817 79940817 G A RBM26 Silent p.P362P 0.17 TCGA-D7-6528-01 13 84453455 84453455 C T SLITRK1 3'UTR 0.58 TCGA-D7-6528-01 13 84454576 84454576 T G SLITRK1 Missense_Mutation p.K356T 0.10 tolerated(0.09) benign(0.004) TCGA-D7-6528-01 13 88329798 88329798 G A SLITRK5 Missense_Mutation p.G719S 0.46 tolerated(0.55) benign(0) TCGA-D7-6528-01 13 96579548 96579548 C T UGGT2 Missense_Mutation p.D674N 0.34 tolerated(0.89) benign(0.007) TCGA-D7-6528-01 14 102028220 102028220 G T DIO3 Silent p.A129A 0.17 TCGA-D7-6528-01 14 20502077 20502077 G T OR4K13 Missense_Mutation p.L281I 0.47 tolerated(0.35) possibly_damaging(0.578) TCGA-D7-6528-01 14 72926380 72926380 A C RGS6 Missense_Mutation p.N128T 0.08 tolerated(0.06) probably_damaging(0.96) TCGA-D7-6528-01 14 75139568 75139568 G C AREL1 Missense_Mutation p.T463S 0.41 tolerated(0.78) benign(0.007) TCGA-D7-6528-01 14 77778318 77778318 A G POMT2 Missense_Mutation p.F103L 0.38 deleterious(0) probably_damaging(1) TCGA-D7-6528-01 14 94112973 94112973 T A UNC79 Missense_Mutation p.F1884I 0.17 deleterious(0.02) possibly_damaging(0.89) TCGA-D7-6528-01 14 95669187 95669187 C A CLMN Missense_Mutation p.M833I 0.12 tolerated(0.16) benign(0.005) TCGA-D7-6528-01 15 102312686 102312686 C G RN7SL209P 3'Flank 0.28 TCGA-D7-6528-01 15 20170343 20170343 A T IGHV1OR15-9 Silent p.T4T 0.25 TCGA-D7-6528-01 15 25339114 25339114 T C SNORD116-25 5'Flank 0.40 TCGA-D7-6528-01 15 25423709 25423709 G A SNORD115-6 5'Flank 0.20 TCGA-D7-6528-01 15 26792910 26792910 T C GABRB3 3'UTR 0.57 TCGA-D7-6528-01 15 34649257 34649257 T G NUTM1 Silent p.T988T 0.11 TCGA-D7-6528-01 15 35530228 35530228 A C ANP32AP1 RNA 0.22 TCGA-D7-6528-01 15 62945507 62945507 G A TLN2 Missense_Mutation p.D171N 0.36 deleterious(0) probably_damaging(0.992) TCGA-D7-6528-01 15 63926976 63926976 G A HERC1 Missense_Mutation p.L4176F 0.20 probably_damaging(0.999) TCGA-D7-6528-01 16 21854796 21854796 T G NPIPB4 Missense_Mutation p.K152N 0.21 probably_damaging(0.953) TCGA-D7-6528-01 16 23080245 23080245 G C USP31 Missense_Mutation p.P1061A 0.43 tolerated_low_confidence(0.18) benign(0.065) TCGA-D7-6528-01 16 27238064 27238064 T C NSMCE1 Missense_Mutation p.I193V 0.38 tolerated(0.16) benign(0.014) TCGA-D7-6528-01 16 2882108 2882108 C T ZG16B Missense_Mutation p.T192I 0.23 tolerated(0.15) benign(0.072) TCGA-D7-6528-01 16 50825577 50825577 C G CYLD Missense_Mutation p.I739M 0.29 tolerated(0.14) possibly_damaging(0.646) TCGA-D7-6528-01 16 57707259 57707259 A C GPR97 Silent p.R29R 0.16 TCGA-D7-6528-01 16 705073 705073 G A WDR90 Silent p.E494E 0.13 TCGA-D7-6528-01 16 70955079 70955079 G T HYDIN Silent p.I2400I 0.40 TCGA-D7-6528-01 16 81095607 81095607 T C C16orf46 Missense_Mutation p.K116R 0.04 tolerated(1) benign(0.002) TCGA-D7-6528-01 16 88748082 88748082 C T SNAI3 Silent p.V39V 0.66 TCGA-D7-6528-01 16 9934899 9934899 A G GRIN2A Missense_Mutation p.L464P 0.18 deleterious(0.01) probably_damaging(1) TCGA-D7-6528-01 17 10415739 10415739 G A MYH1 Missense_Mutation p.P378L 0.05 deleterious(0.02) probably_damaging(0.934) TCGA-D7-6528-01 17 18044113 18044113 G A MYO15A Silent p.L1791L 0.62 TCGA-D7-6528-01 17 33802293 33802293 T G SLFN12L Silent p.P472P 0.20 TCGA-D7-6528-01 17 38520012 38520012 G A CTD-2267D19.3 Missense_Mutation p.R275Q 0.32 tolerated_low_confidence(0.14) benign(0.009) TCGA-D7-6528-01 17 38633833 38633833 C G TNS4 3'UTR 0.06 TCGA-D7-6528-01 17 40721590 40721590 C T MLX Missense_Mutation p.R202C 0.29 deleterious(0) probably_damaging(0.999) TCGA-D7-6528-01 17 44623673 44623673 G C LRRC37A2 Missense_Mutation p.E1036Q 0.20 deleterious(0) benign(0.34) TCGA-D7-6528-01 17 60033154 60033154 T G MED13 Missense_Mutation p.K1890T 0.17 deleterious(0) benign(0.404) TCGA-D7-6528-01 17 60742114 60742114 C T MRC2 Silent p.G108G 0.18 TCGA-D7-6528-01 17 65888127 65888127 A G BPTF Missense_Mutation p.K678E 0.37 benign(0.087) TCGA-D7-6528-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.36 tolerated(0.13) possibly_damaging(0.631) TCGA-D7-6528-01 17 76167882 76167882 T A SYNGR2 Missense_Mutation p.N180K 0.06 tolerated(0.35) possibly_damaging(0.52) TCGA-D7-6528-01 17 9792877 9792877 C A GLP2R Missense_Mutation p.A506D 0.40 tolerated(0.16) benign(0.017) TCGA-D7-6528-01 18 12463377 12463377 C T SPIRE1 Silent p.P537P 0.29 TCGA-D7-6528-01 18 14542958 14542958 T G POTEC Missense_Mutation p.K63T 0.23 deleterious_low_confidence(0) benign(0.403) TCGA-D7-6528-01 18 29172975 29172975 G T TTR Missense_Mutation p.E62D 0.32 tolerated(0.11) benign(0.011) TCGA-D7-6528-01 18 34205506 34205506 C T FHOD3 Silent p.T330T 0.42 TCGA-D7-6528-01 18 34289206 34289206 G A FHOD3 Silent p.P620P 0.32 TCGA-D7-6528-01 18 59157803 59157803 G T CDH20 Missense_Mutation p.R6I 0.37 deleterious_low_confidence(0.02) benign(0.11) TCGA-D7-6528-01 18 633357 633357 G A CLUL1 Missense_Mutation p.G306R 0.33 tolerated(0.9) probably_damaging(0.956) TCGA-D7-6528-01 18 67802494 67802494 A T RTTN Missense_Mutation p.D937E 0.06 tolerated(0.14) benign(0.138) TCGA-D7-6528-01 18 77679395 77679395 C T PQLC1 Missense_Mutation p.D133N 0.37 tolerated(0.12) benign(0.032) TCGA-D7-6528-01 18 9256587 9256587 G A ANKRD12 Missense_Mutation p.E1108K 0.10 deleterious(0.01) probably_damaging(0.998) TCGA-D7-6528-01 19 1257094 1257094 G C MIDN Silent p.R410R 0.08 TCGA-D7-6528-01 19 17108002 17108002 G T CPAMD8 Silent p.P385P 0.30 TCGA-D7-6528-01 19 17283571 17283571 T G MYO9B Missense_Mutation p.F647V 0.06 deleterious(0) probably_damaging(1) TCGA-D7-6528-01 19 17322769 17322769 G A MYO9B 3'UTR 0.38 TCGA-D7-6528-01 19 17877620 17877623 GTGT - FCHO1 Splice_Site p.X112_splice 0.35 TCGA-D7-6528-01 19 18180500 18180500 C T IL12RB1 Missense_Mutation p.V349I 0.26 tolerated(0.16) benign(0.026) TCGA-D7-6528-01 19 22155008 22155008 T G ZNF208 Missense_Mutation p.K943T 0.08 deleterious(0.01) unknown(0) TCGA-D7-6528-01 19 22364289 22364289 T A ZNF676 Missense_Mutation p.E77V 0.29 deleterious(0) benign(0.059) TCGA-D7-6528-01 19 22941224 22941224 A G ZNF99 Missense_Mutation p.L496P 0.29 deleterious(0) probably_damaging(0.999) TCGA-D7-6528-01 19 36515470 36515470 G T CLIP3 Missense_Mutation p.A249E 0.15 tolerated(0.14) benign(0.005) TCGA-D7-6528-01 19 36831555 36831555 A G ZFP14 Silent p.T391T 0.50 TCGA-D7-6528-01 19 43412006 43412006 G A PSG6 Missense_Mutation p.P236L 0.51 tolerated(0.67) benign(0.002) TCGA-D7-6528-01 19 43441274 43441274 A G PSG7 5'UTR 0.06 TCGA-D7-6528-01 19 43866347 43866347 G A CD177 3'UTR 0.15 TCGA-D7-6528-01 19 46915030 46915030 C A CCDC8 Silent p.G346G 0.08 TCGA-D7-6528-01 19 50461825 50461825 G A SIGLEC11 Missense_Mutation p.P456S 0.33 tolerated(0.08) benign(0.098) TCGA-D7-6528-01 19 50949194 50949194 C T MYBPC2 Silent p.F397F 0.20 TCGA-D7-6528-01 19 52520427 52520427 T A ZNF614 Missense_Mutation p.S142C 0.12 tolerated(0.1) benign(0.01) TCGA-D7-6528-01 19 55693409 55693412 CTCT - PTPRH Frame_Shift_Del p.E1057Vfs*4 0.14 TCGA-D7-6528-01 19 56572901 56572901 G A NLRP5 3'UTR 0.10 TCGA-D7-6528-01 19 56935669 56935669 T G ZNF583 Missense_Mutation p.L548V 0.44 tolerated_low_confidence(0.2) possibly_damaging(0.696) TCGA-D7-6528-01 19 9046074 9046074 G A MUC16 Missense_Mutation p.H11853Y 0.53 benign(0.003) TCGA-D7-6528-01 19 9062990 9062990 T G MUC16 Missense_Mutation p.E8152D 0.39 unknown(0) TCGA-D7-6528-01 1 100598738 100598738 C G TRMT13 Missense_Mutation p.A5G 0.09 tolerated_low_confidence(0.17) benign(0.002) TCGA-D7-6528-01 1 104160072 104160072 T A AMY2A Missense_Mutation p.F4I 0.44 tolerated(0.22) benign(0.009) TCGA-D7-6528-01 1 109270515 109270515 A G FNDC7 Silent p.E399E 0.11 TCGA-D7-6528-01 1 11561886 11561886 C T PTCHD2 Silent p.F279F 0.44 TCGA-D7-6528-01 1 151006649 151006649 T A PRUNE Missense_Mutation p.F434Y 0.45 tolerated(0.19) possibly_damaging(0.824) TCGA-D7-6528-01 1 151380596 151380596 A C POGZ Silent p.A785A 0.11 TCGA-D7-6528-01 1 152059360 152059360 T C TCHHL1 Silent p.K266K 0.09 TCGA-D7-6528-01 1 152280800 152280800 T G FLG Missense_Mutation p.S2188R 0.19 benign(0.307) TCGA-D7-6528-01 1 152329336 152329336 T C FLG2 Missense_Mutation p.Q309R 0.12 unknown(0) TCGA-D7-6528-01 1 165218827 165218827 T G LMX1A Missense_Mutation p.E105A 0.18 deleterious(0) probably_damaging(0.958) TCGA-D7-6528-01 1 166831580 166831580 C T TADA1 Missense_Mutation p.D134N 0.06 tolerated(0.33) benign(0.288) TCGA-D7-6528-01 1 173517591 173517591 T G SLC9C2 Missense_Mutation p.E466D 0.37 tolerated(0.53) probably_damaging(0.996) TCGA-D7-6528-01 1 186375301 186375301 G A C1orf27 Missense_Mutation p.D363N 0.27 tolerated(0.09) benign(0.016) TCGA-D7-6528-01 1 203188382 203188382 A C CHIT1 Missense_Mutation p.W331G 0.36 deleterious(0) probably_damaging(1) TCGA-D7-6528-01 1 209785553 209785554 - A CAMK1G Frame_Shift_Ins p.Q447Tfs*12 0.26 TCGA-D7-6528-01 1 216420388 216420388 T A USH2A Missense_Mutation p.N783I 0.31 possibly_damaging(0.857) TCGA-D7-6528-01 1 237813289 237813289 C T RYR2 Missense_Mutation p.A2542V 0.33 possibly_damaging(0.804) TCGA-D7-6528-01 1 243858949 243858949 T A AKT3 Missense_Mutation p.K39I 0.26 deleterious(0) probably_damaging(0.982) TCGA-D7-6528-01 1 243858952 243858952 T A AKT3 Missense_Mutation p.Y38F 0.29 tolerated(0.5) probably_damaging(0.961) TCGA-D7-6528-01 1 248636867 248636867 G A OR2T3 Silent p.A72A 0.06 TCGA-D7-6528-01 1 248685027 248685027 T G OR2G6 Missense_Mutation p.L27R 0.31 deleterious(0) probably_damaging(0.988) TCGA-D7-6528-01 1 3328335 3328335 G A PRDM16 Missense_Mutation p.R525Q 0.08 deleterious(0.01) probably_damaging(0.991) TCGA-D7-6528-01 1 44878323 44878323 A C RNF220 Missense_Mutation p.K185T 0.09 deleterious(0.01) probably_damaging(0.994) TCGA-D7-6528-01 1 57537289 57537289 C T DAB1 Missense_Mutation p.R155K 0.23 tolerated(0.67) possibly_damaging(0.49) TCGA-D7-6528-01 1 61872278 61872278 C T NFIA Silent p.P478P 0.09 TCGA-D7-6528-01 1 62271131 62271131 G C INADL Missense_Mutation p.D521H 0.34 tolerated(0.22) benign(0.103) TCGA-D7-6528-01 1 68512611 68512611 G A DIRAS3 Silent p.L124L 0.06 TCGA-D7-6528-01 1 77558019 77558019 A C PIGK 3'UTR 0.14 TCGA-D7-6528-01 1 7887365 7887365 C T PER3 Silent p.T784T 0.46 TCGA-D7-6528-01 1 84369788 84369788 T G TTLL7 Missense_Mutation p.K728Q 0.29 deleterious(0) benign(0.314) TCGA-D7-6528-01 1 95303425 95303425 T G SLC44A3 Nonsense_Mutation p.L223* 0.08 TCGA-D7-6528-01 20 10025099 10025099 C T ANKEF1 Nonsense_Mutation p.R202* 0.22 TCGA-D7-6528-01 20 15866408 15866408 G C MACROD2 Splice_Site p.X243_splice 0.14 TCGA-D7-6528-01 20 24952138 24952138 C A APMAP Missense_Mutation p.A166S 0.23 tolerated(0.06) benign(0.05) TCGA-D7-6528-01 20 31763239 31763239 T C BPIFA2 Missense_Mutation p.L146P 0.04 deleterious(0) probably_damaging(1) TCGA-D7-6528-01 20 3296404 3296404 T C C20orf194 Missense_Mutation p.E523G 0.06 deleterious(0) probably_damaging(0.999) TCGA-D7-6528-01 20 34025104 34025104 A G GDF5 Missense_Mutation p.I202T 0.29 deleterious(0) probably_damaging(0.954) TCGA-D7-6528-01 20 35152740 35152740 A C DLGAP4 Missense_Mutation p.N864T 0.05 deleterious(0) probably_damaging(0.994) TCGA-D7-6528-01 20 40033690 40033690 A G CHD6 Missense_Mutation p.V2564A 0.35 tolerated(0.81) benign(0) TCGA-D7-6528-01 20 42232466 42232466 G C IFT52 Missense_Mutation p.E92Q 0.31 tolerated(0.06) possibly_damaging(0.859) TCGA-D7-6528-01 20 48129614 48129614 T C PTGIS Intron 0.28 TCGA-D7-6528-01 20 51872267 51872267 T G TSHZ2 Missense_Mutation p.L757R 0.29 tolerated(0.15) possibly_damaging(0.682) TCGA-D7-6528-01 20 57246276 57246276 G C STX16 Missense_Mutation p.E239Q 0.23 deleterious(0.01) probably_damaging(0.986) TCGA-D7-6528-01 20 57415578 57415578 C T RP4-806M20.3 5'Flank 0.19 TCGA-D7-6528-01 20 58545194 58545194 G A CDH26 Missense_Mutation p.E62K 0.23 deleterious(0.04) possibly_damaging(0.58) TCGA-D7-6528-01 20 62891494 62891494 G C PCMTD2 Missense_Mutation p.G59A 0.26 deleterious(0) probably_damaging(0.997) TCGA-D7-6528-01 21 16338789 16338789 G C NRIP1 Missense_Mutation p.I575M 0.38 tolerated(0.1) possibly_damaging(0.884) TCGA-D7-6528-01 21 32624154 32624154 C T TIAM1 Missense_Mutation p.A439T 0.04 tolerated(0.37) benign(0.022) TCGA-D7-6528-01 21 41033300 41033300 C T B3GALT5 Missense_Mutation p.R272C 0.37 tolerated(0.1) benign(0.258) TCGA-D7-6528-01 21 41414515 41414515 C G DSCAM Missense_Mutation p.M1823I 0.32 deleterious(0.01) benign(0.23) TCGA-D7-6528-01 21 45838438 45838438 A C TRPM2 Missense_Mutation p.K1154T 0.11 deleterious(0) benign(0.394) TCGA-D7-6528-01 22 18016838 18016838 G C CECR2 Silent p.L364L 0.27 TCGA-D7-6528-01 22 22313991 22313991 C T TOP3B Missense_Mutation p.R591K 0.45 tolerated(0.88) benign(0.004) TCGA-D7-6528-01 22 22930865 22930865 A C IGLV2-33 Missense_Mutation p.Q20H 0.18 deleterious_low_confidence(0) possibly_damaging(0.56) TCGA-D7-6528-01 22 23248693 23248693 A C IGLC3 Missense_Mutation p.Q61H 0.15 benign(0.155) TCGA-D7-6528-01 22 29695814 29695814 G T EWSR1 Missense_Mutation p.G640V 0.18 deleterious_low_confidence(0.01) unknown(0) TCGA-D7-6528-01 22 29885713 29885713 A T NEFH Missense_Mutation p.K695M 0.03 deleterious_low_confidence(0) possibly_damaging(0.891) TCGA-D7-6528-01 22 38151151 38151151 A G TRIOBP Missense_Mutation p.D1844G 0.25 deleterious(0.02) probably_damaging(0.999) TCGA-D7-6528-01 22 38823739 38823739 C T KCNJ4 Silent p.T133T 0.47 TCGA-D7-6528-01 22 44342321 44342321 T C PNPLA3 3'UTR 0.53 TCGA-D7-6528-01 2 106781218 106781218 G C UXS1 Missense_Mutation p.L54V 0.24 tolerated_low_confidence(0.32) benign(0.001) TCGA-D7-6528-01 2 114483031 114483031 G C SLC35F5 Missense_Mutation p.P392A 0.39 deleterious(0) probably_damaging(1) TCGA-D7-6528-01 2 125262020 125262020 T G CNTNAP5 Missense_Mutation p.L404R 0.30 deleterious(0.01) probably_damaging(1) TCGA-D7-6528-01 2 133489583 133489583 T G NCKAP5 Missense_Mutation p.T1724P 0.37 deleterious(0) probably_damaging(0.999) TCGA-D7-6528-01 2 137814006 137814006 T C THSD7B Silent p.C52C 0.05 TCGA-D7-6528-01 2 137852465 137852465 C T THSD7B Missense_Mutation p.P325S 0.14 tolerated(0.06) probably_damaging(0.991) TCGA-D7-6528-01 2 141004675 141004675 T G LRP1B Missense_Mutation p.K4435T 0.50 benign(0.403) TCGA-D7-6528-01 2 168115002 168115002 A T XIRP2 3'UTR 0.17 TCGA-D7-6528-01 2 169952128 169952128 G A DHRS9 Missense_Mutation p.A271T 0.39 deleterious(0.01) probably_damaging(0.989) TCGA-D7-6528-01 2 170038698 170038698 A T LRP2 Missense_Mutation p.L3326H 0.14 possibly_damaging(0.755) TCGA-D7-6528-01 2 179586841 179586841 A C TTN Missense_Mutation p.F7517V 0.13 TCGA-D7-6528-01 2 179595331 179595331 C T TTN Missense_Mutation p.E5977K 0.11 TCGA-D7-6528-01 2 179612541 179612541 T G TTN Intron 0.16 TCGA-D7-6528-01 2 179614133 179614133 T G TTN Intron 0.13 TCGA-D7-6528-01 2 179644153 179644153 T C TTN Missense_Mutation p.K1256E 0.30 TCGA-D7-6528-01 2 17998077 17998077 T G MSGN1 Missense_Mutation p.L98V 0.07 tolerated(0.11) benign(0.222) TCGA-D7-6528-01 2 187455200 187455201 GG - ITGAV Frame_Shift_Del p.G46Kfs*44 0.12 TCGA-D7-6528-01 2 191796341 191796341 G A GLS Missense_Mutation p.R543Q 0.14 deleterious(0) possibly_damaging(0.899) TCGA-D7-6528-01 2 196762419 196762419 A C DNAH7 Missense_Mutation p.F1540C 0.34 deleterious(0) probably_damaging(0.998) TCGA-D7-6528-01 2 207170929 207170929 A C ZDBF2 Missense_Mutation p.E559D 0.61 tolerated(0.07) possibly_damaging(0.585) TCGA-D7-6528-01 2 210558338 210558338 T G MAP2 Missense_Mutation p.S482A 0.09 tolerated_low_confidence(0.21) benign(0.021) TCGA-D7-6528-01 2 223160324 223160324 T G PAX3 Missense_Mutation p.N125T 0.17 deleterious(0.01) benign(0.014) TCGA-D7-6528-01 2 224462806 224462806 A C SCG2 Missense_Mutation p.L399V 0.48 tolerated(0.36) benign(0.006) TCGA-D7-6528-01 2 227662033 227662033 G A IRS1 Silent p.S474S 0.61 TCGA-D7-6528-01 2 27503062 27503062 A C DNAJC5G Missense_Mutation p.E183D 0.44 tolerated(0.44) benign(0.006) TCGA-D7-6528-01 2 27880285 27880285 C T SUPT7L Missense_Mutation p.G224D 0.49 deleterious(0) probably_damaging(0.986) TCGA-D7-6528-01 2 29383324 29383324 T G CLIP4 Missense_Mutation p.F509V 0.06 deleterious(0) probably_damaging(0.99) TCGA-D7-6528-01 2 29450510 29450510 G A ALK Silent p.P948P 0.18 TCGA-D7-6528-01 2 29754908 29754908 C G ALK Missense_Mutation p.E343Q 0.56 tolerated(0.23) possibly_damaging(0.724) TCGA-D7-6528-01 2 33952741 33952741 G T AC009499.1 Intron 0.49 TCGA-D7-6528-01 2 37096829 37096829 T G STRN Missense_Mutation p.K456T 0.08 deleterious(0) probably_damaging(0.986) TCGA-D7-6528-01 2 37289138 37289138 A G HEATR5B Missense_Mutation p.L547P 0.27 deleterious(0) possibly_damaging(0.565) TCGA-D7-6528-01 2 48896962 48896962 A C STON1-GTF2A1L Missense_Mutation p.E1064D 0.07 tolerated(0.07) benign(0.05) TCGA-D7-6528-01 2 48896972 48896972 A G STON1-GTF2A1L Missense_Mutation p.T1068A 0.09 tolerated(0.41) benign(0.003) TCGA-D7-6528-01 2 55527028 55527028 C G CCDC88A Missense_Mutation p.G1590A 0.47 tolerated(0.21) benign(0.018) TCGA-D7-6528-01 2 62069423 62069423 G T FAM161A Missense_Mutation p.P86T 0.25 deleterious(0.02) benign(0.026) TCGA-D7-6528-01 2 68544218 68544218 G T CNRIP1 Intron 0.43 TCGA-D7-6528-01 2 71039670 71039670 A G CLEC4F Missense_Mutation p.F483S 0.23 deleterious(0) benign(0.36) TCGA-D7-6528-01 2 85584355 85584355 G C ELMOD3 Missense_Mutation p.E12Q 0.42 deleterious_low_confidence(0.02) benign(0.164) TCGA-D7-6528-01 2 88874887 88874887 G T EIF2AK3 Missense_Mutation p.T705K 0.28 tolerated(0.66) benign(0.071) TCGA-D7-6528-01 2 96458242 96458242 A C AC008268.2 RNA 0.14 TCGA-D7-6528-01 2 98996761 98996761 A G CNGA3 Silent p.Q113Q 0.13 TCGA-D7-6528-01 3 109046804 109046804 T G DPPA4 3'UTR 0.08 TCGA-D7-6528-01 3 121641917 121641917 A C SLC15A2 Missense_Mutation p.T300P 0.06 tolerated(0.09) probably_damaging(0.926) TCGA-D7-6528-01 3 122629130 122629130 A G SEMA5B Silent p.L1160L 0.43 TCGA-D7-6528-01 3 123383036 123383036 G A MYLK Missense_Mutation p.R1301C 0.16 tolerated(0.08) benign(0.005) TCGA-D7-6528-01 3 158538076 158538076 G A MFSD1 Missense_Mutation p.C324Y 0.74 tolerated(0.33) benign(0.196) TCGA-D7-6528-01 3 184049780 184049780 G A EIF4G1 Silent p.A1515A 0.12 TCGA-D7-6528-01 3 18427901 18427901 C T SATB1 Missense_Mutation p.R470H 0.10 deleterious(0.01) probably_damaging(0.987) TCGA-D7-6528-01 3 19498345 19498345 T G KCNH8 Missense_Mutation p.C637W 0.26 deleterious(0) probably_damaging(1) TCGA-D7-6528-01 3 30769726 30769726 A C GADL1 3'UTR 0.08 TCGA-D7-6528-01 3 38616871 38616871 G A SCN5A Missense_Mutation p.R1195C 0.80 deleterious(0) probably_damaging(0.961) TCGA-D7-6528-01 3 50971428 50971428 G T DOCK3 Missense_Mutation p.V79F 0.67 deleterious(0) probably_damaging(0.957) TCGA-D7-6528-01 3 53906522 53906522 A C ACTR8 Silent p.T397T 0.28 TCGA-D7-6528-01 3 56183132 56183132 T G ERC2 Missense_Mutation p.N393T 0.24 deleterious(0.04) benign(0.309) TCGA-D7-6528-01 4 128627894 128627894 C A INTU Missense_Mutation p.Q681K 0.57 tolerated(0.11) benign(0.062) TCGA-D7-6528-01 4 138451451 138451451 A C PCDH18 Missense_Mutation p.F598V 0.08 tolerated(0.14) benign(0.063) TCGA-D7-6528-01 4 153333005 153333005 G A FBXW7 5'UTR 0.50 TCGA-D7-6528-01 4 187197505 187197505 T G F11 Missense_Mutation p.F239C 0.07 deleterious(0) probably_damaging(1) TCGA-D7-6528-01 4 20751288 20751288 G A KCNIP4 Silent p.F142F 0.38 TCGA-D7-6528-01 4 48853965 48853965 A G OCIAD1 Missense_Mutation p.T174A 0.47 tolerated(0.05) benign(0.348) TCGA-D7-6528-01 4 57221402 57221402 G A AASDH Missense_Mutation p.S350L 0.22 deleterious(0) probably_damaging(1) TCGA-D7-6528-01 4 66356240 66356240 G A EPHA5 Silent p.S419S 0.51 TCGA-D7-6528-01 4 68383923 68383923 T A CENPC Missense_Mutation p.S261C 0.38 deleterious(0) possibly_damaging(0.615) TCGA-D7-6528-01 4 69101927 69101927 T G TMPRSS11B Missense_Mutation p.N61T 0.23 tolerated(0.25) benign(0.002) TCGA-D7-6528-01 4 8233834 8233834 C T SH3TC1 Nonsense_Mutation p.Q1028* 0.19 TCGA-D7-6528-01 4 88104378 88104378 G A KLHL8 Missense_Mutation p.T310I 0.11 tolerated(0.06) benign(0.135) TCGA-D7-6528-01 5 112175951 112175952 - A APC Frame_Shift_Ins p.T1556Nfs*3 0.33 TCGA-D7-6528-01 5 121780267 121780267 G A SNCAIP Missense_Mutation p.E478K 0.17 tolerated(0.05) probably_damaging(0.999) TCGA-D7-6528-01 5 128320858 128320858 A T SLC27A6 Missense_Mutation p.S172C 0.12 deleterious(0.02) possibly_damaging(0.895) TCGA-D7-6528-01 5 138210621 138210621 C G LRRTM2 5'UTR 0.09 TCGA-D7-6528-01 5 140216062 140216062 G T PCDHA7 Silent p.V698V 0.07 TCGA-D7-6528-01 5 140476166 140476166 T C PCDHB2 Missense_Mutation p.S598P 0.21 deleterious_low_confidence(0) possibly_damaging(0.908) TCGA-D7-6528-01 5 140554036 140554036 G A PCDHB7 Silent p.A540A 0.39 TCGA-D7-6528-01 5 140559856 140559856 T C PCDHB8 Silent p.S747S 0.15 TCGA-D7-6528-01 5 140588829 140588829 T A PCDHB12 Nonsense_Mutation p.L117* 0.40 TCGA-D7-6528-01 5 140734980 140734980 G A PCDHGA4 Silent p.R71R 0.05 TCGA-D7-6528-01 5 143586929 143586929 G A KCTD16 Missense_Mutation p.A218T 0.09 tolerated(0.08) benign(0.003) TCGA-D7-6528-01 5 156186425 156186425 T A SGCD 3'UTR 0.67 TCGA-D7-6528-01 5 156918907 156918907 C T ADAM19 Missense_Mutation p.G641E 0.17 tolerated(0.17) probably_damaging(1) TCGA-D7-6528-01 5 161322838 161322838 T G GABRA1 Silent p.G341G 0.08 TCGA-D7-6528-01 5 178505938 178505938 T C ZNF354C Silent p.L169L 0.07 TCGA-D7-6528-01 5 34796122 34796122 A C RAI14 Missense_Mutation p.Q85H 0.04 tolerated(0.1) probably_damaging(0.967) TCGA-D7-6528-01 5 34941212 34941212 G A DNAJC21 Missense_Mutation p.D303N 0.31 tolerated(0.16) benign(0.444) TCGA-D7-6528-01 5 38490328 38490328 A G LIFR Silent p.L711L 0.34 TCGA-D7-6528-01 5 38933614 38933614 C T OSMR 3'UTR 0.12 TCGA-D7-6528-01 5 39002699 39002699 G A RICTOR Silent p.L110L 0.34 TCGA-D7-6528-01 5 43619206 43619206 A C NNT Missense_Mutation p.K224N 0.13 deleterious(0.04) possibly_damaging(0.896) TCGA-D7-6528-01 5 620252 620252 A C CEP72 Missense_Mutation p.E93D 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-D7-6528-01 5 67575545 67575545 G - PIK3R1 Frame_Shift_Del p.M206Ifs*4 0.38 TCGA-D7-6528-01 5 7820785 7820785 G T ADCY2 Missense_Mutation p.V1036F 0.41 deleterious(0.03) probably_damaging(0.982) TCGA-D7-6528-01 5 80643590 80643590 A - ACOT12 Intron 0.38 TCGA-D7-6528-01 6 116911490 116911490 A C RWDD1 Missense_Mutation p.K157T 0.08 deleterious(0.04) benign(0.072) TCGA-D7-6528-01 6 117632217 117632217 A C ROS1 Missense_Mutation p.C2067G 0.10 deleterious(0) probably_damaging(1) TCGA-D7-6528-01 6 123102375 123102375 T G FABP7 Intron 0.14 TCGA-D7-6528-01 6 127911272 127911272 A C C6orf58 Missense_Mutation p.S239R 0.82 deleterious(0.04) possibly_damaging(0.632) TCGA-D7-6528-01 6 129636643 129636643 C A LAMA2 Missense_Mutation p.T1193N 0.04 tolerated(0.2) possibly_damaging(0.501) TCGA-D7-6528-01 6 129636644 129636644 C T LAMA2 Silent p.T1193T 0.04 TCGA-D7-6528-01 6 137814944 137814944 A T OLIG3 Missense_Mutation p.S122T 0.08 deleterious(0) probably_damaging(0.973) TCGA-D7-6528-01 6 152603109 152603109 A C SYNE1 Missense_Mutation p.L6072V 0.72 benign(0.414) TCGA-D7-6528-01 6 167754541 167754541 T G TTLL2 Missense_Mutation p.L385V 0.11 deleterious(0) probably_damaging(0.93) TCGA-D7-6528-01 6 170105654 170105654 A C C6orf120 3'UTR 0.67 TCGA-D7-6528-01 6 24873165 24873165 T C FAM65B Missense_Mutation p.T94A 0.66 tolerated(0.49) benign(0.045) TCGA-D7-6528-01 6 31591675 31591675 C T PRRC2A Silent p.S93S 0.76 TCGA-D7-6528-01 6 38783350 38783350 G A DNAH8 Missense_Mutation p.R930H 0.20 benign(0.001) TCGA-D7-6528-01 6 47846507 47846507 G A PTCHD4 Silent p.S691S 0.39 TCGA-D7-6528-01 6 50712857 50712857 T C TFAP2D Silent p.T307T 0.05 TCGA-D7-6528-01 6 55192338 55192338 C T GFRAL 5'UTR 0.11 TCGA-D7-6528-01 6 56504281 56504281 G A DST Silent p.N405N 0.29 TCGA-D7-6528-01 6 6266940 6266940 C A F13A1 Missense_Mutation p.R141M 0.15 deleterious(0.01) benign(0.226) TCGA-D7-6528-01 6 75799948 75799948 T C COL12A1 Missense_Mutation p.Q2940R 0.04 probably_damaging(0.994) TCGA-D7-6528-01 6 83889610 83889610 A G PGM3 Silent p.D316D 0.12 TCGA-D7-6528-01 6 90405430 90405430 C T MDN1 Missense_Mutation p.S3222N 0.12 benign(0.25) TCGA-D7-6528-01 7 100490117 100490117 C T ACHE Missense_Mutation p.R464H 0.51 deleterious(0.03) probably_damaging(1) TCGA-D7-6528-01 7 103191603 103191603 G A RELN Silent p.T2071T 0.43 TCGA-D7-6528-01 7 103338447 103338447 A G RELN Silent p.N332N 0.09 TCGA-D7-6528-01 7 106545572 106545572 T C PIK3CG Missense_Mutation p.Y1017H 0.47 deleterious(0) probably_damaging(0.999) TCGA-D7-6528-01 7 106924093 106924093 G C COG5 Missense_Mutation p.I497M 0.15 deleterious(0) probably_damaging(0.952) TCGA-D7-6528-01 7 112461723 112461723 G T C7orf60 3'UTR 0.47 TCGA-D7-6528-01 7 114303506 114303506 A C FOXP2 Missense_Mutation p.S616R 0.45 deleterious(0) possibly_damaging(0.833) TCGA-D7-6528-01 7 123302861 123302861 C T LMOD2 Silent p.V407V 0.07 TCGA-D7-6528-01 7 140082276 140082276 G A SLC37A3 Silent p.S17S 0.27 TCGA-D7-6528-01 7 21631031 21631031 A T DNAH11 Nonsense_Mutation p.K835* 0.24 TCGA-D7-6528-01 7 31690791 31690791 A T CCDC129 Silent p.I899I 0.41 TCGA-D7-6528-01 7 39247145 39247145 T C POU6F2 Missense_Mutation p.L146P 0.07 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-D7-6528-01 7 45956889 45956889 G A IGFBP3 Missense_Mutation p.R191C 0.47 deleterious(0.03) probably_damaging(1) TCGA-D7-6528-01 7 47698868 47698868 A C C7orf65 3'UTR 0.17 TCGA-D7-6528-01 7 56087373 56087373 G C PSPH Silent p.R65R 0.47 TCGA-D7-6528-01 7 62752534 62752534 T C ZNF733P RNA 0.33 TCGA-D7-6528-01 7 64388278 64388278 C G ZNF273 Nonsense_Mutation p.S191* 0.42 TCGA-D7-6528-01 7 86468386 86468386 A C GRM3 Missense_Mutation p.K519T 0.40 deleterious(0) probably_damaging(1) TCGA-D7-6528-01 7 86539263 86539263 T G KIAA1324L Missense_Mutation p.I742L 0.30 tolerated(0.67) benign(0.001) TCGA-D7-6528-01 7 90675256 90675256 T A CDK14 Silent p.S344S 0.06 TCGA-D7-6528-01 7 95664938 95664938 T C DYNC1I1 Missense_Mutation p.M430T 0.48 deleterious(0) probably_damaging(0.956) TCGA-D7-6528-01 8 101252743 101252743 T G SPAG1 Missense_Mutation p.L798R 0.26 deleterious(0.01) benign(0.349) TCGA-D7-6528-01 8 105361735 105361735 C T DCSTAMP Missense_Mutation p.R319W 0.51 tolerated(0.3) benign(0.006) TCGA-D7-6528-01 8 141745365 141745365 A G PTK2 Missense_Mutation p.L672P 0.17 deleterious(0) probably_damaging(0.955) TCGA-D7-6528-01 8 145725526 145725526 A T PPP1R16A Missense_Mutation p.D175V 0.32 deleterious(0) probably_damaging(1) TCGA-D7-6528-01 8 15621747 15621747 A G TUSC3 3'UTR 0.43 TCGA-D7-6528-01 8 17409284 17409284 C T SLC7A2 Missense_Mutation p.R322W 0.53 deleterious(0) probably_damaging(0.963) TCGA-D7-6528-01 8 20112401 20112401 A C LZTS1 Missense_Mutation p.F98V 0.11 tolerated(0.48) probably_damaging(0.985) TCGA-D7-6528-01 8 22442530 22442530 G A PDLIM2 Missense_Mutation p.G356S 0.09 deleterious(0.04) possibly_damaging(0.493) TCGA-D7-6528-01 8 28309947 28309947 G A FBXO16 Missense_Mutation p.T185I 0.13 tolerated(0.15) benign(0.041) TCGA-D7-6528-01 8 33246606 33246606 G A FUT10 Nonsense_Mutation p.R363* 0.11 TCGA-D7-6528-01 8 37791994 37791994 C T GOT1L1 Silent p.V361V 0.14 TCGA-D7-6528-01 8 55540472 55540472 T - RP1 Frame_Shift_Del p.L1345* 0.09 TCGA-D7-6528-01 8 59059700 59059700 T C FAM110B Missense_Mutation p.I304T 0.50 deleterious(0) benign(0.087) TCGA-D7-6528-01 8 88365898 88365898 T C CNBD1 Missense_Mutation p.L396P 0.33 deleterious(0) probably_damaging(0.999) TCGA-D7-6528-01 8 89058904 89058904 T A MMP16 Missense_Mutation p.K494N 0.23 tolerated(0.37) probably_damaging(1) TCGA-D7-6528-01 8 99101943 99101943 G C C8orf47 Missense_Mutation p.G233A 0.37 tolerated(0.08) probably_damaging(0.959) TCGA-D7-6528-01 9 105767737 105767737 A C CYLC2 Missense_Mutation p.K275T 0.08 tolerated(0.27) unknown(0) TCGA-D7-6528-01 9 114454528 114454529 - A C9orf84 Frame_Shift_Ins p.L1179Ffs*19 0.28 TCGA-D7-6528-01 9 13192277 13192277 T A MPDZ Missense_Mutation p.L607F 0.41 deleterious(0) probably_damaging(1) TCGA-D7-6528-01 9 137622253 137622253 C T COL5A1 Nonsense_Mutation p.Q366* 0.36 TCGA-D7-6528-01 9 141006876 141006876 G A CACNA1B Missense_Mutation p.A1819T 0.38 deleterious(0.03) possibly_damaging(0.781) TCGA-D7-6528-01 9 17273831 17273831 T G CNTLN Missense_Mutation p.L317R 0.16 deleterious(0.04) probably_damaging(0.994) TCGA-D7-6528-01 9 18795443 18795443 A C ADAMTSL1 Missense_Mutation p.E1242D 0.08 deleterious(0.01) possibly_damaging(0.689) TCGA-D7-6528-01 9 36118751 36118751 C T RECK Intron 0.29 TCGA-D7-6528-01 9 4719266 4719266 C A AK3 Missense_Mutation p.A105S 0.33 tolerated(0.66) benign(0.005) TCGA-D7-6528-01 9 6012492 6012492 T C RANBP6 Missense_Mutation p.N1039S 0.40 deleterious(0.05) possibly_damaging(0.589) TCGA-D7-6528-01 9 84610036 84610036 T G SPATA31D1 Missense_Mutation p.F1551V 0.39 deleterious(0.04) benign(0.356) TCGA-D7-6528-01 9 86518567 86518567 G A KIF27 Missense_Mutation p.S289L 0.42 deleterious(0.03) benign(0.297) TCGA-D7-6528-01 9 90344590 90344590 G A CTSL Missense_Mutation p.V242M 0.16 tolerated(0.05) possibly_damaging(0.768) TCGA-D7-6528-01 9 90503371 90503371 G - SPATA31E1 Frame_Shift_Del p.G1324Dfs*49 0.25 TCGA-D7-6528-01 X 102612766 102612766 T A WBP5 Missense_Mutation p.S52T 0.08 tolerated(0.51) probably_damaging(0.949) TCGA-D7-6528-01 X 102864315 102864315 G A TCEAL3 Missense_Mutation p.R108Q 0.32 tolerated(0.05) possibly_damaging(0.782) TCGA-D7-6528-01 X 103431172 103431172 T C FAM199X Missense_Mutation p.V200A 0.06 tolerated(0.13) probably_damaging(0.98) TCGA-D7-6528-01 X 105450489 105450489 C A MUM1L1 Missense_Mutation p.S355Y 0.14 deleterious(0.02) probably_damaging(0.971) TCGA-D7-6528-01 X 107396918 107396918 A C ATG4A Missense_Mutation p.E391D 0.14 tolerated(0.24) probably_damaging(0.952) TCGA-D7-6528-01 X 109764906 109764906 T G TDGF1P3 RNA 0.05 TCGA-D7-6528-01 X 11316822 11316822 T G AMELX Missense_Mutation p.M114R 0.06 tolerated(0.07) unknown(0) TCGA-D7-6528-01 X 117700536 117700536 G A DOCK11 Splice_Site p.X291_splice 0.24 TCGA-D7-6528-01 X 118694316 118694316 G - CXorf56 Frame_Shift_Del p.R53Gfs*6 0.37 TCGA-D7-6528-01 X 119760554 119760555 - C C1GALT1C1 Nonsense_Mutation p.Y156* 0.19 TCGA-D7-6528-01 X 120182817 120182817 G T GLUD2 Missense_Mutation p.D427Y 0.18 deleterious(0.01) probably_damaging(0.968) TCGA-D7-6528-01 X 123540219 123540219 G T TENM1 Silent p.V1701V 0.29 TCGA-D7-6528-01 X 123775705 123775705 A C TENM1 Silent p.T671T 0.27 TCGA-D7-6528-01 X 12905418 12905418 T A TLR7 Silent p.V597V 0.31 TCGA-D7-6528-01 X 129159091 129159091 A G BCORL1 Missense_Mutation p.Q1272R 0.07 benign(0.351) TCGA-D7-6528-01 X 133700336 133700336 T A PLAC1 Missense_Mutation p.K126M 0.05 tolerated(0.21) benign(0.008) TCGA-D7-6528-01 X 135279258 135279258 T A FHL1 Intron 0.08 TCGA-D7-6528-01 X 140271010 140271010 T A LDOC1 Missense_Mutation p.E66V 0.37 tolerated(0.07) probably_damaging(0.994) TCGA-D7-6528-01 X 147743468 147743468 A T AFF2 Missense_Mutation p.T74S 0.13 deleterious(0) probably_damaging(0.987) TCGA-D7-6528-01 X 148586601 148586601 C T IDS Missense_Mutation p.A23T 0.49 tolerated(0.47) benign(0.004) TCGA-D7-6528-01 X 153296057 153296057 A G MECP2 Silent p.L420L 0.10 TCGA-D7-6528-01 X 153668347 153668347 T C GDI1 Missense_Mutation p.F150L 0.09 deleterious(0.02) benign(0.097) TCGA-D7-6528-01 X 155127890 155127890 T C VAMP7 Missense_Mutation p.S107P 0.03 deleterious(0.01) probably_damaging(0.964) TCGA-D7-6528-01 X 15599426 15599426 T G ACE2 Missense_Mutation p.N330H 0.12 tolerated(0.07) probably_damaging(0.959) TCGA-D7-6528-01 X 18221885 18221885 T G BEND2 Missense_Mutation p.S215R 0.04 tolerated(0.34) benign(0) TCGA-D7-6528-01 X 19431562 19431562 G C MAP3K15 Silent p.T537T 0.50 TCGA-D7-6528-01 X 31645908 31645908 T G DMD Missense_Mutation p.K2700T 0.09 possibly_damaging(0.607) TCGA-D7-6528-01 X 35820769 35820769 T C MAGEB16 Silent p.S152S 0.28 TCGA-D7-6528-01 X 40460100 40460100 G C ATP6AP2 Missense_Mutation p.R275S 0.46 deleterious(0) probably_damaging(0.999) TCGA-D7-6528-01 X 40552032 40552032 G C MED14 Missense_Mutation p.F591L 0.22 tolerated(0.34) possibly_damaging(0.53) TCGA-D7-6528-01 X 47104478 47104478 A T USP11 Missense_Mutation p.E760V 0.08 tolerated(0.1) probably_damaging(0.955) TCGA-D7-6528-01 X 47434138 47434138 T C SYN1 Missense_Mutation p.T448A 0.33 tolerated(0.78) benign(0.002) TCGA-D7-6528-01 X 47775719 47775719 T A ZNF81 Missense_Mutation p.D558E 0.11 tolerated(0.6) benign(0.01) TCGA-D7-6528-01 X 53265548 53265548 T G IQSEC2 Missense_Mutation p.K1136T 0.17 deleterious(0) probably_damaging(1) TCGA-D7-6528-01 X 55041235 55041235 A C ALAS2 Missense_Mutation p.L461R 0.40 deleterious(0) probably_damaging(0.999) TCGA-D7-6528-01 X 57162840 57162840 G T SPIN2A Missense_Mutation p.P64H 0.29 deleterious(0.04) benign(0.03) TCGA-D7-6528-01 X 64738169 64738169 G A LAS1L Missense_Mutation p.A542V 0.09 tolerated(0.15) benign(0.15) TCGA-D7-6528-01 X 70323883 70323883 T G CXorf65 Missense_Mutation p.K169T 0.10 tolerated_low_confidence(0.13) benign(0.368) TCGA-D7-6528-01 X 70523493 70523493 A T ITGB1BP2 Missense_Mutation p.E162V 0.10 deleterious(0.03) possibly_damaging(0.666) TCGA-D7-6528-01 X 71360037 71360037 G A NHSL2 Missense_Mutation p.R880K 0.14 deleterious(0.04) benign(0.145) TCGA-D7-6528-01 X 71360088 71360088 T C NHSL2 Missense_Mutation p.L897P 0.42 tolerated(0.06) benign(0.174) TCGA-D7-6528-01 X 72433801 72433801 A G NAP1L2 Silent p.D176D 0.06 TCGA-D7-6528-01 X 73812036 73812036 G T RLIM Silent p.R372R 0.14 TCGA-D7-6528-01 X 73963244 73963244 T C KIAA2022 Missense_Mutation p.K383R 0.03 tolerated(0.05) benign(0.131) TCGA-D7-6528-01 X 76918897 76918897 T G ATRX Missense_Mutation p.E1365A 0.12 benign(0.132) TCGA-D7-6528-01 X 76939970 76939970 T G ATRX Missense_Mutation p.N260H 0.11 probably_damaging(0.997) TCGA-D7-6528-01 X 85155675 85155675 G A CHM Silent p.V463V 0.28 TCGA-D7-6528-01 X 91132001 91132001 T G PCDH11X Missense_Mutation p.I254M 0.20 deleterious(0.03) possibly_damaging(0.714) TCGA-D7-6528-01 X 91873823 91873823 A G PCDH11X Missense_Mutation p.R1310G 0.04 tolerated_low_confidence(0.14) probably_damaging(0.972) TCGA-D7-6528-01 X 9679769 9679769 T G TBL1X Missense_Mutation p.L520V 0.15 tolerated(0.07) possibly_damaging(0.777) TCGA-D7-6815-01 10 18134102 18134102 A G MRC1 Intron 0.12 TCGA-D7-6815-01 10 60573731 60573731 A G BICC1 Missense_Mutation p.K840E 0.30 tolerated(0.08) probably_damaging(0.993) TCGA-D7-6815-01 10 64977091 64977091 C A JMJD1C Missense_Mutation p.G185V 0.16 deleterious(0.03) possibly_damaging(0.456) TCGA-D7-6815-01 11 111782347 111782347 C T CRYAB Silent p.E34E 0.30 TCGA-D7-6815-01 11 119063944 119063944 C T CCDC153 Missense_Mutation p.R89H 0.19 tolerated(0.05) probably_damaging(0.96) TCGA-D7-6815-01 11 125764059 125764059 G A PUS3 Missense_Mutation p.A356V 0.05 deleterious(0.01) benign(0.044) TCGA-D7-6815-01 11 19252213 19252213 T - E2F8 Frame_Shift_Del p.N412Ifs*37 0.20 TCGA-D7-6815-01 11 56058005 56058005 G A OR8H1 Silent p.C178C 0.44 TCGA-D7-6815-01 11 65273753 65273753 C G MALAT1 RNA 0.33 TCGA-D7-6815-01 11 93104248 93104248 G A CCDC67 Silent p.Q197Q 0.53 TCGA-D7-6815-01 12 123200189 123200189 A C HCAR3 Missense_Mutation p.S366A 0.12 tolerated_low_confidence(1) benign(0) TCGA-D7-6815-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.16 deleterious(0.04) probably_damaging(0.993) TCGA-D7-6815-01 12 41957359 41957359 G C PDZRN4 Missense_Mutation p.E459Q 0.08 tolerated(0.38) benign(0.134) TCGA-D7-6815-01 12 50036741 50036741 G A PRPF40B Missense_Mutation p.G716D 0.22 tolerated(0.05) probably_damaging(0.969) TCGA-D7-6815-01 12 56115030 56115030 G C RDH5 Missense_Mutation p.R21P 0.09 deleterious(0.02) possibly_damaging(0.796) TCGA-D7-6815-01 12 57918174 57918174 C T MBD6 Nonsense_Mutation p.R30* 0.29 TCGA-D7-6815-01 12 62147508 62147508 T A FAM19A2 Missense_Mutation p.K93N 0.08 deleterious(0) possibly_damaging(0.734) TCGA-D7-6815-01 12 63976297 63976297 A C DPY19L2 Missense_Mutation p.F538L 0.10 deleterious(0) possibly_damaging(0.491) TCGA-D7-6815-01 13 23929289 23929289 G A SACS Missense_Mutation p.P488S 0.10 probably_damaging(0.999) TCGA-D7-6815-01 13 36445395 36445395 G T DCLK1 Silent p.S302S 0.10 TCGA-D7-6815-01 13 36445396 36445396 G T DCLK1 Missense_Mutation p.S302Y 0.11 deleterious(0.01) possibly_damaging(0.781) TCGA-D7-6815-01 13 41517138 41517138 C T ELF1 Silent p.K252K 0.44 TCGA-D7-6815-01 14 102931611 102931611 T A TECPR2 Silent p.I1258I 0.19 TCGA-D7-6815-01 14 103600064 103600064 G T TNFAIP2 Nonsense_Mutation p.E583* 0.42 TCGA-D7-6815-01 14 104639830 104639831 - GAC KIF26A In_Frame_Ins p.E616_K617insT 0.33 TCGA-D7-6815-01 14 20020001 20020001 C T POTEM Missense_Mutation p.G74R 0.04 tolerated_low_confidence(0.15) probably_damaging(0.997) TCGA-D7-6815-01 14 36300638 36300640 AAG - BRMS1L In_Frame_Del p.R58del 0.14 TCGA-D7-6815-01 14 65259772 65259772 C A SPTB Missense_Mutation p.W870L 0.32 tolerated(0.27) probably_damaging(0.967) TCGA-D7-6815-01 14 88895764 88895764 T C SPATA7 Missense_Mutation p.W329R 0.20 deleterious(0.01) probably_damaging(0.991) TCGA-D7-6815-01 15 43622421 43622421 G A LCMT2 Silent p.G89G 0.45 TCGA-D7-6815-01 15 43622422 43622422 C A LCMT2 Missense_Mutation p.G89V 0.45 deleterious(0) probably_damaging(1) TCGA-D7-6815-01 15 65140916 65140916 C - AC069368.3 Frame_Shift_Del p.Q47Sfs*83 0.32 TCGA-D7-6815-01 15 89382194 89382194 G A ACAN Missense_Mutation p.R124H 0.12 deleterious(0.02) unknown(0) TCGA-D7-6815-01 16 1306318 1306318 C T TPSD1 Silent p.L13L 0.07 TCGA-D7-6815-01 16 1398100 1398100 C T BAIAP3 Silent p.S1086S 0.32 TCGA-D7-6815-01 16 24942343 24942343 C T ARHGAP17 Silent p.T759T 0.26 TCGA-D7-6815-01 16 28602110 28602110 C T CCDC101 Missense_Mutation p.R207W 0.45 deleterious(0.02) benign(0.113) TCGA-D7-6815-01 16 3139286 3139286 G A ZSCAN10 Nonsense_Mutation p.Q662* 0.25 TCGA-D7-6815-01 16 31435274 31435274 C T ITGAD Missense_Mutation p.R1052C 0.21 deleterious(0.02) benign(0.217) TCGA-D7-6815-01 16 3613636 3613636 C T NLRC3 Silent p.P481P 0.33 TCGA-D7-6815-01 16 3779597 3779597 C T CREBBP Silent p.P1817P 0.22 TCGA-D7-6815-01 16 4802675 4802675 G A ZNF500 Missense_Mutation p.P382L 0.29 tolerated(0.21) benign(0.07) TCGA-D7-6815-01 16 66946243 66946243 G A CDH16 Missense_Mutation p.R484C 0.12 deleterious(0) benign(0.168) TCGA-D7-6815-01 16 67321045 67321045 C T PLEKHG4 Missense_Mutation p.S1023F 0.24 deleterious(0.01) possibly_damaging(0.885) TCGA-D7-6815-01 16 75203864 75203865 - CACAG ZFP1 Frame_Shift_Ins p.H286Pfs*60 0.45 TCGA-D7-6815-01 16 85143910 85143910 G A FAM92B Silent p.S59S 0.26 TCGA-D7-6815-01 16 88643772 88643772 C T ZC3H18 Nonsense_Mutation p.Q81* 0.32 TCGA-D7-6815-01 16 88747615 88747616 - GGC SNAI3 In_Frame_Ins p.S194_L195insR 0.28 TCGA-D7-6815-01 17 2236864 2236864 C T TSR1 Silent p.L376L 0.21 TCGA-D7-6815-01 17 27807468 27807468 C A TAOK1 Missense_Mutation p.P178T 0.42 deleterious(0) probably_damaging(0.983) TCGA-D7-6815-01 17 34958585 34958585 C T MRM1 Missense_Mutation p.H116Y 0.08 deleterious(0) probably_damaging(0.998) TCGA-D7-6815-01 17 36708247 36708247 G T SRCIN1 Missense_Mutation p.P868T 0.03 deleterious(0.03) probably_damaging(0.95) TCGA-D7-6815-01 17 36874191 36874191 G C MLLT6 Missense_Mutation p.E643Q 0.04 tolerated(0.21) unknown(0) TCGA-D7-6815-01 17 36991427 36991427 A G C17orf98 3'UTR 0.02 TCGA-D7-6815-01 17 57287385 57287385 G A SMG8 5'UTR 0.14 TCGA-D7-6815-01 17 58235657 58235657 G A CA4 Silent p.T198T 0.36 TCGA-D7-6815-01 17 60758158 60758158 C A MRC2 Intron 0.17 TCGA-D7-6815-01 17 61613084 61613084 G A KCNH6 Missense_Mutation p.V386I 0.40 deleterious(0.03) probably_damaging(0.97) TCGA-D7-6815-01 17 61958860 61958860 G A GH2 Silent p.L10L 0.25 TCGA-D7-6815-01 17 74080608 74080608 G A EXOC7 Missense_Mutation p.P640L 0.14 tolerated(0.14) benign(0.441) TCGA-D7-6815-01 17 75483600 75483600 C - SEPT9 Frame_Shift_Del p.K338Rfs*19 0.18 TCGA-D7-6815-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.86 tolerated(0.11) benign(0.308) TCGA-D7-6815-01 17 8770971 8770971 G T PIK3R6 5'UTR 0.84 TCGA-D7-6815-01 18 48593481 48593482 - T SMAD4 Frame_Shift_Ins p.Y412Lfs*17 0.28 TCGA-D7-6815-01 18 48604674 48604674 G A SMAD4 Missense_Mutation p.C499Y 0.24 deleterious(0) probably_damaging(0.992) TCGA-D7-6815-01 18 61309051 61309051 T C SERPINB4 Silent p.A98A 0.17 TCGA-D7-6815-01 18 674121 674121 A G ENOSF1 3'UTR 0.70 TCGA-D7-6815-01 19 19141867 19141867 C T SUGP2 Missense_Mutation p.R5Q 0.26 deleterious(0) probably_damaging(0.999) TCGA-D7-6815-01 19 39879402 39879404 CTA - PAF1 In_Frame_Del p.I246_R247delinsM 0.17 TCGA-D7-6815-01 19 47569645 47569645 A G ZC3H4 Missense_Mutation p.F1294L 0.24 unknown(0) TCGA-D7-6815-01 19 50666388 50666388 G A IZUMO2 Silent p.L22L 0.50 TCGA-D7-6815-01 19 51981863 51981863 G A CEACAM18 Silent p.E50E 0.31 TCGA-D7-6815-01 19 54254543 54254543 G A MIR522 RNA 0.46 TCGA-D7-6815-01 19 54307212 54307212 G A NLRP12 Missense_Mutation p.T860I 0.29 tolerated(0.37) benign(0.011) TCGA-D7-6815-01 19 57889486 57889486 G A ZNF547 Missense_Mutation p.S381N 0.38 tolerated(0.18) benign(0.006) TCGA-D7-6815-01 19 805530 805530 G A PTBP1 Missense_Mutation p.A311T 0.17 tolerated(0.05) benign(0.002) TCGA-D7-6815-01 1 10399860 10399860 G A KIF1B Silent p.T1106T 0.14 TCGA-D7-6815-01 1 10527292 10527292 T A DFFA Missense_Mutation p.K132N 0.16 deleterious(0) probably_damaging(0.984) TCGA-D7-6815-01 1 11907410 11907410 C T NPPA Silent p.A70A 0.31 TCGA-D7-6815-01 1 12835687 12835687 C T PRAMEF12 Missense_Mutation p.R97W 0.05 deleterious(0) benign(0.001) TCGA-D7-6815-01 1 152279018 152279018 C T FLG Missense_Mutation p.G2782S 0.08 benign(0.271) TCGA-D7-6815-01 1 152279524 152279524 C A FLG Missense_Mutation p.R2613I 0.08 possibly_damaging(0.624) TCGA-D7-6815-01 1 155223695 155223695 T G FAM189B Missense_Mutation p.K156N 0.12 deleterious(0.05) benign(0.383) TCGA-D7-6815-01 1 156236454 156236454 C T SMG5 Missense_Mutation p.S378N 0.15 deleterious(0.04) benign(0.06) TCGA-D7-6815-01 1 160099970 160099970 C T ATP1A2 Missense_Mutation p.R514W 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-D7-6815-01 1 166891981 166891981 G A ILDR2 Missense_Mutation p.H354Y 0.26 deleterious(0.01) benign(0.222) TCGA-D7-6815-01 1 169356434 169356434 G A BLZF1 3'UTR 0.31 TCGA-D7-6815-01 1 181732633 181732633 G A CACNA1E Missense_Mutation p.R1594H 0.22 deleterious(0) possibly_damaging(0.812) TCGA-D7-6815-01 1 202121712 202121712 G - PTPN7 Frame_Shift_Del p.P383Rfs*11 0.21 TCGA-D7-6815-01 1 202842892 202842892 G A RP11-480I12.7 RNA 0.21 TCGA-D7-6815-01 1 228444584 228444584 C T OBSCN Silent p.C1606C 0.26 TCGA-D7-6815-01 1 33747303 33747303 G A ZNF362 Missense_Mutation p.A267T 0.12 tolerated(0.13) possibly_damaging(0.788) TCGA-D7-6815-01 1 36563353 36563353 C T COL8A2 Silent p.P643P 0.07 TCGA-D7-6815-01 1 44137280 44137280 G A KDM4A Missense_Mutation p.V490M 0.26 tolerated(0.12) probably_damaging(0.969) TCGA-D7-6815-01 1 52082772 52082772 C T OSBPL9 5'UTR 0.22 TCGA-D7-6815-01 20 23066171 23066171 G A CD93 Missense_Mutation p.A220V 0.13 tolerated(1) benign(0.002) TCGA-D7-6815-01 20 32341059 32341059 C T ZNF341 Missense_Mutation p.P191S 0.38 tolerated(0.67) benign(0.281) TCGA-D7-6815-01 20 36975024 36975024 C T LBP Silent p.T35T 0.09 TCGA-D7-6815-01 20 39728846 39728846 C T TOP1 Nonsense_Mutation p.R376* 0.22 TCGA-D7-6815-01 21 40555269 40555269 G C PSMG1 Missense_Mutation p.R15G 0.44 deleterious(0) probably_damaging(0.999) TCGA-D7-6815-01 22 21988517 21988517 G A CCDC116 Silent p.A93A 0.29 TCGA-D7-6815-01 22 28193748 28193748 C T MN1 Silent p.S928S 0.37 TCGA-D7-6815-01 22 42271599 42271599 G T SREBF2 Silent p.L419L 0.22 TCGA-D7-6815-01 2 119988587 119988587 G A STEAP3 5'UTR 0.25 TCGA-D7-6815-01 2 1670014 1670014 G C PXDN Silent p.V421V 0.08 TCGA-D7-6815-01 2 204735610 204735610 G A CTLA4 Silent p.P137P 0.49 TCGA-D7-6815-01 2 21230333 21230333 C T APOB Missense_Mutation p.R3136H 0.09 benign(0.004) TCGA-D7-6815-01 2 238280465 238280466 - G COL6A3 Frame_Shift_Ins p.S1399Qfs*33 0.15 TCGA-D7-6815-01 2 27454962 27454962 C T CAD Nonsense_Mutation p.R839* 0.43 TCGA-D7-6815-01 2 27485807 27485807 G A SLC30A3 5'UTR 0.39 TCGA-D7-6815-01 2 27801051 27801051 G A C2orf16 Missense_Mutation p.E538K 0.14 tolerated(0.76) benign(0.007) TCGA-D7-6815-01 2 33952443 33952443 C T AC009499.1 Intron 0.55 TCGA-D7-6815-01 2 8870881 8870881 C G KIDINS220 Missense_Mutation p.G1762A 0.24 tolerated_low_confidence(0.51) benign(0.003) TCGA-D7-6815-01 3 111603367 111603367 A G PHLDB2 Missense_Mutation p.Y148C 0.31 deleterious(0.01) benign(0.117) TCGA-D7-6815-01 3 151073819 151073819 G A MED12L Missense_Mutation p.A850T 0.27 deleterious(0.02) benign(0.042) TCGA-D7-6815-01 3 165503997 165503997 C T BCHE Silent p.T540T 0.34 TCGA-D7-6815-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.16 deleterious(0.02) probably_damaging(0.959) TCGA-D7-6815-01 3 183823112 183823112 G A HTR3E Missense_Mutation p.R232Q 0.33 tolerated(0.5) benign(0.005) TCGA-D7-6815-01 3 184041232 184041232 C T EIF4G1 Nonsense_Mutation p.R716* 0.25 TCGA-D7-6815-01 3 191861866 191861866 G A FGF12 Missense_Mutation p.R222C 0.33 deleterious(0.04) possibly_damaging(0.854) TCGA-D7-6815-01 3 24185037 24185037 C T THRB Silent p.A231A 0.24 TCGA-D7-6815-01 3 37368302 37368302 G T GOLGA4 Missense_Mutation p.R1664I 0.10 possibly_damaging(0.622) TCGA-D7-6815-01 3 42264549 42264549 C T TRAK1 Missense_Mutation p.R728C 0.37 deleterious(0) probably_damaging(0.999) TCGA-D7-6815-01 3 4699844 4699844 C T ITPR1 Missense_Mutation p.R330W 0.43 deleterious(0.01) possibly_damaging(0.806) TCGA-D7-6815-01 3 49691693 49691693 G A BSN Silent p.Q1568Q 0.46 TCGA-D7-6815-01 3 50220987 50220987 G A SEMA3F Missense_Mutation p.R408Q 0.20 deleterious(0) probably_damaging(1) TCGA-D7-6815-01 4 16258166 16258166 C T TAPT1-AS1 RNA 0.30 TCGA-D7-6815-01 5 131530693 131530693 T C P4HA2 Missense_Mutation p.N488S 0.09 deleterious(0) probably_damaging(0.999) TCGA-D7-6815-01 5 140188676 140188676 G A PCDHA4 Missense_Mutation p.R635H 0.51 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-D7-6815-01 5 140207964 140207964 C T PCDHA6 Silent p.C96C 0.52 TCGA-D7-6815-01 5 140755558 140755558 C T PCDHGA6 Silent p.D636D 0.10 TCGA-D7-6815-01 5 148758792 148758792 G A IL17B 5'UTR 0.09 TCGA-D7-6815-01 5 149754631 149754631 C A TCOF1 Missense_Mutation p.Q465K 0.08 deleterious(0.02) possibly_damaging(0.672) TCGA-D7-6815-01 5 150907625 150907625 G T FAT2 Missense_Mutation p.L3366I 0.71 probably_damaging(0.967) TCGA-D7-6815-01 5 153190663 153190663 G T GRIA1 Missense_Mutation p.A877S 0.52 tolerated_low_confidence(1) benign(0.103) TCGA-D7-6815-01 5 86672329 86672329 C T RASA1 Nonsense_Mutation p.R711* 0.15 TCGA-D7-6815-01 6 100390958 100390958 G A MCHR2 Missense_Mutation p.R152W 0.07 tolerated(0.18) possibly_damaging(0.803) TCGA-D7-6815-01 6 10398591 10398591 G A TFAP2A 3'UTR 0.38 TCGA-D7-6815-01 6 129937433 129937434 - A ARHGAP18 Frame_Shift_Ins p.C323Lfs*32 0.17 TCGA-D7-6815-01 6 142721726 142721726 C A GPR126 Silent p.R558R 0.10 TCGA-D7-6815-01 6 152651740 152651740 A T SYNE1 Missense_Mutation p.F4694I 0.15 benign(0.342) TCGA-D7-6815-01 6 29408180 29408180 C T OR10C1 Missense_Mutation p.R130C 0.25 deleterious(0.04) benign(0.003) TCGA-D7-6815-01 6 31797805 31797805 A C HSPA1B 3'UTR 0.14 TCGA-D7-6815-01 6 35705852 35705852 G A ARMC12 Missense_Mutation p.R98Q 0.33 tolerated(0.1) probably_damaging(1) TCGA-D7-6815-01 6 41001837 41001837 G C UNC5CL Missense_Mutation p.Q157E 0.11 tolerated(0.19) probably_damaging(0.995) TCGA-D7-6815-01 6 46823761 46823761 G A GPR116 Missense_Mutation p.S1304F 0.19 deleterious(0) probably_damaging(0.996) TCGA-D7-6815-01 6 49698923 49698923 C A CRISP3 Missense_Mutation p.G211V 0.43 deleterious(0) probably_damaging(0.996) TCGA-D7-6815-01 6 80751871 80751871 T C TTK Silent p.H842H 0.21 TCGA-D7-6815-01 7 100350655 100350655 T G ZAN Missense_Mutation p.L976R 0.51 unknown(0) TCGA-D7-6815-01 7 100417377 100417377 C T EPHB4 Missense_Mutation p.G367R 0.35 tolerated(0.3) benign(0.003) TCGA-D7-6815-01 7 103848396 103848396 G A ORC5 5'UTR 0.56 TCGA-D7-6815-01 7 111398842 111398842 C T DOCK4 Silent p.L1380L 0.14 TCGA-D7-6815-01 7 136938377 136938377 T - PTN Frame_Shift_Del p.V42* 0.20 TCGA-D7-6815-01 7 13971291 13971291 C T ETV1 Missense_Mutation p.R213H 0.25 tolerated(0.21) benign(0.119) TCGA-D7-6815-01 7 148921431 148921431 G A ZNF282 Missense_Mutation p.G570S 0.53 deleterious(0.05) possibly_damaging(0.631) TCGA-D7-6815-01 7 150775086 150775086 C T FASTK Missense_Mutation p.E307K 0.35 tolerated(0.81) possibly_damaging(0.734) TCGA-D7-6815-01 7 151254294 151254294 G A PRKAG2 Missense_Mutation p.T568M 0.48 tolerated_low_confidence(0.12) benign(0.256) TCGA-D7-6815-01 7 15470727 15470727 T A AGMO Missense_Mutation p.N139I 0.11 deleterious(0) probably_damaging(0.979) TCGA-D7-6815-01 7 21779199 21779199 C A DNAH11 Missense_Mutation p.Q2615K 0.42 possibly_damaging(0.516) TCGA-D7-6815-01 7 23205329 23205329 A G KLHL7 Missense_Mutation p.T317A 0.22 tolerated(0.15) benign(0) TCGA-D7-6815-01 7 84629053 84629053 C A SEMA3D Silent p.L679L 0.10 TCGA-D7-6815-01 8 106815221 106815221 G A ZFPM2 Missense_Mutation p.A971T 0.09 deleterious(0.05) possibly_damaging(0.905) TCGA-D7-6815-01 8 106815458 106815458 C T ZFPM2 Nonsense_Mutation p.Q1050* 0.07 TCGA-D7-6815-01 8 121530251 121530251 G C MTBP Missense_Mutation p.A803P 0.12 tolerated(0.21) benign(0.005) TCGA-D7-6815-01 8 125072955 125072955 G A FER1L6 Intron 0.23 TCGA-D7-6815-01 8 144809765 144809765 G A FAM83H Silent p.A622A 0.12 TCGA-D7-6815-01 8 26237332 26237332 C T BNIP3L 5'Flank 0.33 TCGA-D7-6815-01 8 62212794 62212794 C T CLVS1 Silent p.Y136Y 0.43 TCGA-D7-6815-01 8 98973727 98973727 C T MATN2 Silent p.Y309Y 0.22 TCGA-D7-6815-01 9 101904870 101904870 A T TGFBR1 Silent p.G286G 0.25 TCGA-D7-6815-01 9 105767016 105767016 C A CYLC2 Missense_Mutation p.P74T 0.07 deleterious(0) probably_damaging(1) TCGA-D7-6815-01 9 115818962 115818962 C T ZFP37 Missense_Mutation p.V3I 0.33 tolerated_low_confidence(0.13) benign(0.054) TCGA-D7-6815-01 9 15846777 15846777 G T CCDC171 Silent p.L1115L 0.73 TCGA-D7-6815-01 9 5089674 5089674 G A JAK2 Missense_Mutation p.G858S 0.10 deleterious(0) probably_damaging(0.973) TCGA-D7-6815-01 9 79002415 79002415 A G RFK Missense_Mutation p.I123T 0.27 deleterious(0.04) probably_damaging(0.923) TCGA-D7-6815-01 X 100178029 100178029 C T XKRX Silent p.K119K 0.12 TCGA-D7-6815-01 X 118223121 118223121 G T KIAA1210 Missense_Mutation p.A691D 0.26 tolerated(0.17) possibly_damaging(0.609) TCGA-D7-6815-01 X 131351389 131351389 C T RAP2C 5'UTR 0.32 TCGA-D7-6815-01 X 19002097 19002097 C T PHKA2 5'UTR 0.12 TCGA-D7-6815-01 X 30326860 30326860 C T NR0B1 Silent p.P207P 0.35 TCGA-D7-6815-01 X 41446216 41446216 G T CASK Missense_Mutation p.P420T 0.10 tolerated(0.6) benign(0.205) TCGA-D7-6815-01 X 48776164 48776164 G A PIM2 5'UTR 0.25 TCGA-D7-6815-01 X 64754491 64754491 T G LAS1L Silent p.P35P 0.48 TCGA-D7-6815-01 X 91090711 91090711 G A PCDH11X Missense_Mutation p.G70R 0.35 tolerated(0.07) possibly_damaging(0.868) TCGA-D7-6817-01 10 133106478 133106478 G C TCERG1L Missense_Mutation p.I222M 0.14 tolerated(0.16) benign(0.018) TCGA-D7-6817-01 10 43089832 43089832 T C ZNF33B Missense_Mutation p.E189G 0.30 tolerated(0.06) possibly_damaging(0.597) TCGA-D7-6817-01 10 85962839 85962839 G A CDHR1 Missense_Mutation p.G248D 0.04 deleterious(0.02) possibly_damaging(0.768) TCGA-D7-6817-01 10 95276832 95276832 A G CEP55 Missense_Mutation p.K274E 0.09 tolerated(0.1) possibly_damaging(0.6) TCGA-D7-6817-01 11 100999722 100999722 A G PGR Missense_Mutation p.L27P 0.24 deleterious_low_confidence(0.05) possibly_damaging(0.679) TCGA-D7-6817-01 11 14504693 14504693 G A COPB1 Missense_Mutation p.A281V 0.23 deleterious(0.03) probably_damaging(0.998) TCGA-D7-6817-01 11 45924104 45924104 G A MAPK8IP1 Silent p.S262S 0.12 TCGA-D7-6817-01 11 49168243 49168243 C G FOLH1 3'UTR 0.12 TCGA-D7-6817-01 11 56468183 56468183 C A OR9G1 Missense_Mutation p.A107D 0.10 tolerated(0.09) benign(0.027) TCGA-D7-6817-01 11 62572934 62572934 G A NXF1 5'UTR 0.36 TCGA-D7-6817-01 11 66330310 66330310 A T CTSF 3'Flank 0.16 TCGA-D7-6817-01 11 67068796 67068796 C T ANKRD13D Silent p.S425S 0.13 TCGA-D7-6817-01 11 78387401 78387401 G A TENM4 Silent p.A1764A 0.38 TCGA-D7-6817-01 12 130648028 130648028 C G FZD10 Missense_Mutation p.P181A 0.30 tolerated(0.21) benign(0.001) TCGA-D7-6817-01 12 40689398 40689398 G T LRRK2 Silent p.L1016L 0.13 TCGA-D7-6817-01 12 56650822 56650822 G A ANKRD52 Missense_Mutation p.R80C 0.20 deleterious(0) probably_damaging(0.999) TCGA-D7-6817-01 13 101753166 101753166 G A NALCN Missense_Mutation p.A1044V 0.07 deleterious(0) probably_damaging(0.996) TCGA-D7-6817-01 13 29933476 29933476 C T MTUS2 Missense_Mutation p.R1005W 0.23 deleterious(0) possibly_damaging(0.85) TCGA-D7-6817-01 13 32869526 32869526 C T FRY Missense_Mutation p.R2991C 0.12 deleterious_low_confidence(0.02) benign(0.066) TCGA-D7-6817-01 13 52509058 52509058 C T ATP7B Missense_Mutation p.R1411Q 0.27 tolerated(0.06) benign(0.133) TCGA-D7-6817-01 14 24538052 24538052 C T LRRC16B Missense_Mutation p.R1287C 0.16 deleterious_low_confidence(0.01) unknown(0) TCGA-D7-6817-01 14 56757012 56757012 C T PELI2 Silent p.P178P 0.16 TCGA-D7-6817-01 14 64746715 64746715 A T ESR2 Missense_Mutation p.F173L 0.18 deleterious(0) probably_damaging(0.954) TCGA-D7-6817-01 14 76905997 76905997 C T ESRRB Missense_Mutation p.R101C 0.18 deleterious(0) probably_damaging(1) TCGA-D7-6817-01 16 15703512 15703512 T C KIAA0430 Silent p.Q1274Q 0.15 TCGA-D7-6817-01 16 732036 732036 A C STUB1 Missense_Mutation p.D210A 0.04 tolerated(0.05) benign(0.047) TCGA-D7-6817-01 17 10300235 10300235 G A MYH8 Missense_Mutation p.S1416F 0.13 deleterious(0) benign(0.247) TCGA-D7-6817-01 17 11713560 11713560 C G DNAH9 Intron 0.10 TCGA-D7-6817-01 17 29631298 29631298 G T EVI2B Missense_Mutation p.P444T 0.08 deleterious(0) probably_damaging(0.958) TCGA-D7-6817-01 17 51900738 51900738 G C KIF2B Missense_Mutation p.W115S 0.11 tolerated(0.87) benign(0.398) TCGA-D7-6817-01 17 60742129 60742129 C G MRC2 Missense_Mutation p.D113E 0.09 deleterious(0) probably_damaging(0.999) TCGA-D7-6817-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.30 tolerated(0.13) possibly_damaging(0.631) TCGA-D7-6817-01 17 76989937 76989937 G A CANT1 Missense_Mutation p.R301C 0.23 deleterious(0) probably_damaging(1) TCGA-D7-6817-01 19 19312898 19312898 C T NR2C2AP Intron 0.42 TCGA-D7-6817-01 19 3600344 3600344 C T TBXA2R Missense_Mutation p.A97T 0.56 tolerated(0.53) benign(0.026) TCGA-D7-6817-01 19 42510819 42510819 C T GRIK5 Missense_Mutation p.G672D 0.38 deleterious(0) probably_damaging(1) TCGA-D7-6817-01 19 9063102 9063102 G T MUC16 Missense_Mutation p.P8115Q 0.34 unknown(0) TCGA-D7-6817-01 1 155340643 155340643 C T ASH1L Missense_Mutation p.R2155K 0.17 tolerated_low_confidence(0.06) possibly_damaging(0.792) TCGA-D7-6817-01 1 245022628 245022628 T C HNRNPU Missense_Mutation p.I356V 0.13 tolerated(0.93) unknown(0) TCGA-D7-6817-01 1 248844940 248844940 C T OR14I1 Silent p.T222T 0.47 TCGA-D7-6817-01 20 33324511 33324511 G A NCOA6 Missense_Mutation p.A1982V 0.07 benign(0.001) TCGA-D7-6817-01 20 42744524 42744524 C T JPH2 Silent p.S597S 0.07 TCGA-D7-6817-01 20 57036311 57036311 G A APCDD1L Silent p.G347G 0.18 TCGA-D7-6817-01 20 62326251 62326251 C T RTEL1 Silent p.D1113D 0.08 TCGA-D7-6817-01 21 44949700 44949700 G A HSF2BP Silent p.N313N 0.32 TCGA-D7-6817-01 2 103334867 103334867 G C MFSD9 3'UTR 0.19 TCGA-D7-6817-01 2 11727567 11727567 C T GREB1 Intron 0.17 TCGA-D7-6817-01 2 136594316 136594316 G A LCT Missense_Mutation p.R142W 0.23 tolerated(0.06) benign(0.001) TCGA-D7-6817-01 2 149227248 149227248 T G MBD5 Nonsense_Mutation p.L579* 0.14 TCGA-D7-6817-01 2 166848778 166848778 C T SCN1A Silent p.A1669A 0.18 TCGA-D7-6817-01 2 170591630 170591630 A T KLHL23 Missense_Mutation p.T36S 0.22 tolerated(0.33) possibly_damaging(0.735) TCGA-D7-6817-01 2 175436475 175436475 C T WIPF1 Missense_Mutation p.R353H 0.20 tolerated(0.07) probably_damaging(0.976) TCGA-D7-6817-01 2 179433173 179433173 C T TTN Missense_Mutation p.G25896R 0.16 TCGA-D7-6817-01 2 197298041 197298041 G C HECW2 Missense_Mutation p.S36C 0.21 tolerated_low_confidence(0.07) benign(0.237) TCGA-D7-6817-01 2 229890556 229890556 C G PID1 Missense_Mutation p.W180S 0.12 deleterious(0) probably_damaging(0.998) TCGA-D7-6817-01 2 27560303 27560305 GTG - GTF3C2 Intron 0.19 TCGA-D7-6817-01 2 33747139 33747139 T C RASGRP3 Silent p.F162F 0.17 TCGA-D7-6817-01 2 48915510 48915510 G C LHCGR Missense_Mutation p.Q476E 0.13 deleterious(0.01) benign(0.103) TCGA-D7-6817-01 2 50149136 50149136 A G NRXN1 Silent p.S1530S 0.16 TCGA-D7-6817-01 2 51254917 51254917 C A NRXN1 Silent p.A165A 0.17 TCGA-D7-6817-01 2 85981419 85981419 G C ATOH8 Missense_Mutation p.R36P 0.20 tolerated_low_confidence(0.08) probably_damaging(0.995) TCGA-D7-6817-01 2 96047430 96047430 G T KCNIP3 Missense_Mutation p.K178N 0.16 deleterious(0.02) probably_damaging(0.997) TCGA-D7-6817-01 3 100348472 100348472 C T GPR128 Missense_Mutation p.T49I 0.37 tolerated(0.75) benign(0.002) TCGA-D7-6817-01 3 128780696 128780696 C T GP9 Silent p.C38C 0.21 TCGA-D7-6817-01 3 27326454 27326454 T A NEK10 Splice_Site p.X597_splice 0.11 TCGA-D7-6817-01 3 35778692 35778692 T A ARPP21 Missense_Mutation p.D460E 0.11 deleterious(0.02) probably_damaging(0.992) TCGA-D7-6817-01 3 49689341 49689341 C T BSN Silent p.D784D 0.16 TCGA-D7-6817-01 4 103790019 103790019 A C UBE2D3 5'UTR 0.42 TCGA-D7-6817-01 4 122722979 122722979 C G EXOSC9 Intron 0.07 TCGA-D7-6817-01 4 20611744 20611744 G C SLIT2 Missense_Mutation p.L1267F 0.16 tolerated(0.22) possibly_damaging(0.784) TCGA-D7-6817-01 4 3182315 3182315 A C HTT Missense_Mutation p.K1562N 0.10 possibly_damaging(0.753) TCGA-D7-6817-01 4 48994096 48994096 G A CWH43 Missense_Mutation p.R167H 0.17 deleterious(0.05) probably_damaging(0.919) TCGA-D7-6817-01 4 57261654 57261654 A G PPAT Missense_Mutation p.I473T 0.14 deleterious(0.01) benign(0.011) TCGA-D7-6817-01 4 90170079 90170079 G C GPRIN3 Missense_Mutation p.Q395E 0.19 tolerated(0.1) possibly_damaging(0.69) TCGA-D7-6817-01 5 5462426 5462426 C A KIAA0947 Missense_Mutation p.D993E 0.21 tolerated(0.11) possibly_damaging(0.465) TCGA-D7-6817-01 6 133783490 133783490 T G EYA4 Missense_Mutation p.L152R 0.10 deleterious(0) probably_damaging(0.999) TCGA-D7-6817-01 6 136590668 136590668 C T BCLAF1 Missense_Mutation p.G709E 0.06 tolerated(0.24) probably_damaging(0.969) TCGA-D7-6817-01 6 152265607 152265607 C A ESR1 Missense_Mutation p.L354M 0.14 deleterious(0) probably_damaging(0.989) TCGA-D7-6817-01 6 169632105 169632105 G A THBS2 Silent p.C707C 0.19 TCGA-D7-6817-01 6 26184287 26184287 G C HIST1H2BE Silent p.S88S 0.22 TCGA-D7-6817-01 6 28120096 28120096 G C ZKSCAN8 Missense_Mutation p.D237H 0.17 tolerated(0.09) possibly_damaging(0.746) TCGA-D7-6817-01 6 38877309 38877309 C G DNAH8 Missense_Mutation p.R2960G 0.12 probably_damaging(0.994) TCGA-D7-6817-01 6 97051544 97051544 A C FHL5 Missense_Mutation p.K19Q 0.20 deleterious(0.05) benign(0.327) TCGA-D7-6817-01 7 136849031 136849031 A C hsa-mir-490 Intron 0.27 TCGA-D7-6817-01 7 2262355 2262355 C T MAD1L1 Missense_Mutation p.R109H 0.08 deleterious(0.01) benign(0.262) TCGA-D7-6817-01 7 2701401 2701401 G C TTYH3 3'UTR 0.26 TCGA-D7-6817-01 7 37960772 37960772 G A EPDR1 Silent p.R77R 0.08 TCGA-D7-6817-01 7 57187881 57187881 C G ZNF479 Missense_Mutation p.C414S 0.13 deleterious(0.01) probably_damaging(0.987) TCGA-D7-6817-01 7 71252650 71252650 G A CALN1 3'UTR 0.17 TCGA-D7-6817-01 7 77523312 77523312 T G PHTF2 Splice_Site p.X38_splice 0.23 TCGA-D7-6817-01 8 117671101 117671101 A G EIF3H Silent p.S136S 0.13 TCGA-D7-6817-01 8 121256184 121256184 G C COL14A1 Missense_Mutation p.V806L 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-D7-6817-01 8 41530028 41530034 TCTGACC - ANK1 Frame_Shift_Del p.R1686Kfs*43 0.07 TCGA-D7-6817-01 8 68930132 68930132 G T PREX2 Missense_Mutation p.V65L 0.26 tolerated(0.73) benign(0.069) TCGA-D7-6817-01 8 68930133 68930133 T A PREX2 Missense_Mutation p.V65E 0.26 deleterious(0) possibly_damaging(0.659) TCGA-D7-6817-01 8 68982086 68982086 G T PREX2 Missense_Mutation p.C487F 0.05 deleterious(0.05) probably_damaging(0.993) TCGA-D7-6817-01 8 70594509 70594509 G T SLCO5A1 Missense_Mutation p.H564Q 0.13 deleterious(0.02) benign(0.174) TCGA-D7-6817-01 8 77690640 77690640 T A ZFHX4 Missense_Mutation p.I1097N 0.09 benign(0.04) TCGA-D7-6817-01 8 92355626 92355626 T G SLC26A7 Missense_Mutation p.F358V 0.12 tolerated(0.22) possibly_damaging(0.732) TCGA-D7-6817-01 9 118974146 118974146 G T PAPPA Missense_Mutation p.G618V 0.21 tolerated(0.55) probably_damaging(0.988) TCGA-D7-6817-01 9 82335006 82335006 C T TLE4 Missense_Mutation p.R546C 0.41 tolerated(0.09) benign(0.006) TCGA-D7-6817-01 X 125299536 125299536 G A DCAF12L2 Silent p.D124D 0.69 TCGA-D7-6817-01 X 139865927 139865927 C T CDR1 Missense_Mutation p.G202D 0.32 tolerated(0.21) probably_damaging(0.969) TCGA-D7-6817-01 X 22244557 22244557 T C PHEX Intron 0.17 TCGA-D7-6817-01 X 30269232 30269232 A G MAGEB1 Missense_Mutation p.I208V 0.70 deleterious(0.01) probably_damaging(1) TCGA-D7-6817-01 X 591691 591691 A G SHOX Missense_Mutation p.N20S 0.10 tolerated_low_confidence(1) benign(0) TCGA-D7-6817-01 X 83128313 83128313 T A CYLC1 Missense_Mutation p.D199E 0.15 tolerated(0.36) possibly_damaging(0.621) TCGA-D7-6818-01 10 129900854 129900854 G A MKI67 Missense_Mutation p.P3084S 0.16 tolerated(0.52) benign(0.276) TCGA-D7-6818-01 10 17113494 17113494 T C CUBN Silent p.Q852Q 0.16 TCGA-D7-6818-01 10 23292249 23292249 A C ARMC3 Missense_Mutation p.K546T 0.25 tolerated(0.15) possibly_damaging(0.517) TCGA-D7-6818-01 10 4995103 4995103 C T AKR1C1 5'UTR 0.09 TCGA-D7-6818-01 10 5242199 5242199 G A AKR1C4 Missense_Mutation p.R47H 0.34 tolerated(0.08) benign(0.041) TCGA-D7-6818-01 10 55582808 55582808 T C PCDH15 Missense_Mutation p.S1562G 0.16 tolerated_low_confidence(0.09) benign(0.045) TCGA-D7-6818-01 10 84711261 84711261 T G NRG3 Missense_Mutation p.I364S 0.21 deleterious(0) benign(0.423) TCGA-D7-6818-01 11 103124033 103124033 A C DYNC2H1 Missense_Mutation p.Q3361H 0.43 possibly_damaging(0.708) TCGA-D7-6818-01 11 113220875 113220875 C T TTC12 Missense_Mutation p.A412V 0.05 tolerated(0.06) benign(0.277) TCGA-D7-6818-01 11 114118040 114118040 A C ZBTB16 Missense_Mutation p.K582T 0.06 tolerated(0.24) possibly_damaging(0.833) TCGA-D7-6818-01 11 118771672 118771672 G A BCL9L Missense_Mutation p.P927L 0.18 probably_damaging(0.983) TCGA-D7-6818-01 11 17741264 17741264 A G MYOD1 5'UTR 0.26 TCGA-D7-6818-01 11 18134215 18134215 A G SAA3P RNA 0.15 TCGA-D7-6818-01 11 20077343 20077343 C T NAV2 Silent p.S1580S 0.28 TCGA-D7-6818-01 11 22833442 22833442 C T GAS2 Silent p.I274I 0.09 TCGA-D7-6818-01 11 4904025 4904025 A G OR51T1 Missense_Mutation p.K326R 0.21 deleterious(0.05) benign(0.034) TCGA-D7-6818-01 11 5364505 5364505 A G OR51B5 Missense_Mutation p.W84R 0.31 deleterious(0) probably_damaging(0.928) TCGA-D7-6818-01 11 55563186 55563186 A T OR5D14 Missense_Mutation p.K52M 0.05 deleterious(0) possibly_damaging(0.687) TCGA-D7-6818-01 11 55563610 55563610 T A OR5D14 Missense_Mutation p.D193E 0.16 deleterious(0) possibly_damaging(0.571) TCGA-D7-6818-01 11 56409864 56409864 A C OR5AP2 Missense_Mutation p.F18V 0.10 deleterious(0) probably_damaging(0.997) TCGA-D7-6818-01 11 6265440 6265440 A C CNGA4 Missense_Mutation p.K510T 0.21 deleterious(0) benign(0.08) TCGA-D7-6818-01 11 64056123 64056123 T G GPR137 Missense_Mutation p.F379V 0.37 deleterious(0) probably_damaging(0.959) TCGA-D7-6818-01 11 64329765 64329765 A G SLC22A11 Missense_Mutation p.R227G 0.06 deleterious(0.02) benign(0.345) TCGA-D7-6818-01 11 64496457 64496457 C T RASGRP2 Missense_Mutation p.R550H 0.23 deleterious(0) possibly_damaging(0.903) TCGA-D7-6818-01 11 66468026 66468026 G - SPTBN2 Frame_Shift_Del p.R1182Vfs*37 0.24 TCGA-D7-6818-01 11 89880537 89880537 A C NAALAD2 Missense_Mutation p.Q78H 0.10 deleterious(0.03) benign(0.014) TCGA-D7-6818-01 12 118619209 118619209 C A TAOK3 Silent p.L511L 0.15 TCGA-D7-6818-01 12 21200120 21200120 T G SLCO1B7 Silent p.G321G 0.21 TCGA-D7-6818-01 12 23687116 23687116 T C SOX5 3'UTR 0.22 TCGA-D7-6818-01 12 24970853 24970853 A T BCAT1 3'UTR 0.62 TCGA-D7-6818-01 12 34177047 34177047 T C ALG10 Missense_Mutation p.F108L 0.19 tolerated(0.74) benign(0.174) TCGA-D7-6818-01 12 43777757 43777757 T C ADAMTS20 Silent p.G1492G 0.43 TCGA-D7-6818-01 12 53002152 53002152 G T KRT73 Missense_Mutation p.P484H 0.12 deleterious_low_confidence(0.03) benign(0.016) TCGA-D7-6818-01 12 54960855 54960855 T C PDE1B Missense_Mutation p.Y71H 0.28 deleterious(0.01) probably_damaging(0.99) TCGA-D7-6818-01 12 7531837 7531837 A C CD163L1 Missense_Mutation p.V703G 0.20 deleterious(0) probably_damaging(1) TCGA-D7-6818-01 12 85449826 85449826 A C LRRIQ1 Missense_Mutation p.K419Q 0.09 deleterious(0.01) possibly_damaging(0.776) TCGA-D7-6818-01 12 88388493 88388493 A C C12orf50 Missense_Mutation p.L170R 0.26 deleterious(0.04) possibly_damaging(0.452) TCGA-D7-6818-01 13 101717888 101717888 T G NALCN Missense_Mutation p.K1491T 0.12 deleterious(0) probably_damaging(0.986) TCGA-D7-6818-01 13 102051417 102051417 C T NALCN Missense_Mutation p.D21N 0.65 tolerated(0.06) probably_damaging(0.954) TCGA-D7-6818-01 14 100123443 100123443 G A HHIPL1 Missense_Mutation p.G337R 0.06 deleterious(0) probably_damaging(0.998) TCGA-D7-6818-01 14 106622096 106622096 T G IGHV3-16 Missense_Mutation p.N50T 0.23 tolerated_low_confidence(0.09) benign(0.014) TCGA-D7-6818-01 14 106667790 106667790 A C IGHV3-20 Missense_Mutation p.F48V 0.26 deleterious_low_confidence(0.03) benign(0.165) TCGA-D7-6818-01 14 22508884 22508884 T G TRAV20 5'UTR 0.32 TCGA-D7-6818-01 14 23530626 23530626 C A ACIN1 Missense_Mutation p.R1160L 0.25 probably_damaging(0.987) TCGA-D7-6818-01 14 23889146 23889146 G A MYH7 Missense_Mutation p.R1212W 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-D7-6818-01 14 33292966 33292966 T C AKAP6 Missense_Mutation p.S1983P 0.17 tolerated(1) benign(0.004) TCGA-D7-6818-01 14 42356853 42356853 T C LRFN5 Missense_Mutation p.L342P 0.23 deleterious(0) probably_damaging(1) TCGA-D7-6818-01 14 60976152 60976152 G T SIX6 Missense_Mutation p.Q12H 0.23 deleterious(0.02) benign(0.003) TCGA-D7-6818-01 14 69349291 69349291 G A ACTN1 Missense_Mutation p.R613W 0.12 deleterious(0) possibly_damaging(0.773) TCGA-D7-6818-01 15 49303966 49303966 A C SECISBP2L Missense_Mutation p.F609C 0.18 tolerated(0.07) possibly_damaging(0.806) TCGA-D7-6818-01 15 85619125 85619125 C T PDE8A Missense_Mutation p.T156I 0.19 deleterious(0) probably_damaging(0.988) TCGA-D7-6818-01 16 15841950 15841950 G A MYH11 Missense_Mutation p.R719W 0.14 probably_damaging(1) TCGA-D7-6818-01 16 160567 160567 C T NPRL3 Silent p.L195L 0.18 TCGA-D7-6818-01 16 20481029 20481029 A G ACSM2A Missense_Mutation p.K195R 0.13 tolerated(0.78) benign(0.025) TCGA-D7-6818-01 16 21416254 21416254 C T NPIPB3 Missense_Mutation p.A152T 0.04 probably_damaging(0.989) TCGA-D7-6818-01 16 23079341 23079341 G A USP31 3'UTR 0.33 TCGA-D7-6818-01 16 24801035 24801035 C T TNRC6A Missense_Mutation p.P358S 0.14 deleterious(0.02) probably_damaging(0.999) TCGA-D7-6818-01 16 30035099 30035099 G A C16orf92 Missense_Mutation p.R61H 0.16 tolerated(0.54) benign(0.106) TCGA-D7-6818-01 16 51174365 51174365 A G SALL1 Missense_Mutation p.S590P 0.16 tolerated(0.3) benign(0.009) TCGA-D7-6818-01 16 61687413 61687413 T G CDH8 3'UTR 0.31 TCGA-D7-6818-01 17 11696975 11696975 T G DNAH9 Silent p.T2739T 0.31 TCGA-D7-6818-01 17 16041498 16041498 G T NCOR1 Missense_Mutation p.L461I 0.15 probably_damaging(0.992) TCGA-D7-6818-01 17 17077319 17077319 C G MPRIP Missense_Mutation p.A840G 0.06 deleterious(0.01) possibly_damaging(0.489) TCGA-D7-6818-01 17 33592994 33592994 C G SLFN5 3'UTR 0.86 TCGA-D7-6818-01 17 4086708 4086708 G A ANKFY1 Missense_Mutation p.A688V 0.30 deleterious(0.04) possibly_damaging(0.705) TCGA-D7-6818-01 17 73945808 73945808 C T ACOX1 Missense_Mutation p.R490H 0.24 deleterious(0) probably_damaging(1) TCGA-D7-6818-01 17 7491725 7491725 C G SOX15 Missense_Mutation p.G225R 0.43 tolerated_low_confidence(0.06) probably_damaging(0.999) TCGA-D7-6818-01 17 7577090 7577096 CGCCGGT - TP53 Frame_Shift_Del p.D281Afs*62 0.44 TCGA-D7-6818-01 17 8791715 8791715 C T PIK3R5 Silent p.L463L 0.36 TCGA-D7-6818-01 17 8926512 8926512 C T NTN1 Silent p.Y274Y 0.25 TCGA-D7-6818-01 18 47101837 47101837 C T LIPG Missense_Mutation p.R224C 0.19 deleterious(0.01) benign(0.052) TCGA-D7-6818-01 19 19032555 19032555 T C DDX49 Missense_Mutation p.M108T 0.40 tolerated(0.3) benign(0.091) TCGA-D7-6818-01 19 22574432 22574432 T C ZNF98 Silent p.R535R 0.23 TCGA-D7-6818-01 19 22574473 22574473 C T ZNF98 Missense_Mutation p.E522K 0.14 tolerated(0.06) benign(0.147) TCGA-D7-6818-01 19 40361014 40361014 G C FCGBP Missense_Mutation p.R5132G 0.16 possibly_damaging(0.765) TCGA-D7-6818-01 19 40382289 40382289 A C FCGBP Missense_Mutation p.F3533V 0.09 possibly_damaging(0.637) TCGA-D7-6818-01 19 49547340 49547340 C T CGB5 5'UTR 0.12 TCGA-D7-6818-01 19 55773938 55773938 G T HSPBP1 3'UTR 0.28 TCGA-D7-6818-01 19 56243743 56243743 T C NLRP9 Missense_Mutation p.Q485R 0.20 tolerated(0.17) benign(0.01) TCGA-D7-6818-01 19 58004370 58004370 A T ZNF419 Missense_Mutation p.S150C 0.31 deleterious(0) benign(0.111) TCGA-D7-6818-01 19 9062878 9062878 T C MUC16 Missense_Mutation p.S8190G 0.17 unknown(0) TCGA-D7-6818-01 1 150230435 150230435 C T CA14 5'UTR 0.45 TCGA-D7-6818-01 1 152328611 152328611 T G FLG2 Missense_Mutation p.S551R 0.53 unknown(0) TCGA-D7-6818-01 1 157811573 157811573 A G CD5L 5'UTR 0.77 TCGA-D7-6818-01 1 158390476 158390476 A C OR10K2 Missense_Mutation p.F61V 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-D7-6818-01 1 160147396 160147396 G A ATP1A4 Missense_Mutation p.R893H 0.05 deleterious(0.01) probably_damaging(1) TCGA-D7-6818-01 1 160518103 160518103 T G CD84 Missense_Mutation p.K327N 0.17 deleterious(0) possibly_damaging(0.839) TCGA-D7-6818-01 1 180155295 180155295 A G QSOX1 Missense_Mutation p.K332R 0.16 tolerated(0.3) benign(0.016) TCGA-D7-6818-01 1 186055375 186055375 T G HMCN1 Intron 0.31 TCGA-D7-6818-01 1 215914804 215914804 A G USH2A Missense_Mutation p.L3875P 0.16 probably_damaging(0.928) TCGA-D7-6818-01 1 216373317 216373317 T G USH2A Missense_Mutation p.S1155R 0.26 benign(0.392) TCGA-D7-6818-01 1 226923713 226923713 C A ITPKB Missense_Mutation p.D483Y 0.11 deleterious_low_confidence(0) benign(0.048) TCGA-D7-6818-01 1 23520606 23520606 G A HTR1D Missense_Mutation p.A36V 0.24 tolerated(0.17) benign(0.004) TCGA-D7-6818-01 1 24387551 24387551 C A MYOM3 Missense_Mutation p.K1331N 0.21 deleterious(0) possibly_damaging(0.479) TCGA-D7-6818-01 1 248201728 248201728 T C OR2L2 Silent p.H53H 0.08 TCGA-D7-6818-01 1 248366812 248366812 C T OR2M3 Missense_Mutation p.S148F 0.21 deleterious(0.02) possibly_damaging(0.451) TCGA-D7-6818-01 1 28241024 28241024 C T RPA2 5'UTR 0.56 TCGA-D7-6818-01 1 34112430 34112430 T G CSMD2 Missense_Mutation p.N1491T 0.24 deleterious(0) possibly_damaging(0.557) TCGA-D7-6818-01 1 4772679 4772679 T G AJAP1 Missense_Mutation p.V250G 0.37 deleterious(0) benign(0.013) TCGA-D7-6818-01 1 67292601 67292601 A T WDR78 Silent p.T747T 0.28 TCGA-D7-6818-01 1 79095598 79095598 C T IFI44L Missense_Mutation p.R241W 0.24 tolerated(0.07) benign(0.003) TCGA-D7-6818-01 20 30458971 30458980 TGCCATTAGG - TTLL9 Frame_Shift_Del p.I16Pfs*33 0.09 TCGA-D7-6818-01 21 40608669 40608669 C T BRWD1 Missense_Mutation p.G873D 0.17 deleterious(0) probably_damaging(0.999) TCGA-D7-6818-01 2 152727081 152727081 C T CACNB4 Silent p.P221P 0.10 TCGA-D7-6818-01 2 166536175 166536175 C T CSRNP3 Missense_Mutation p.P557L 0.05 tolerated_low_confidence(0.07) benign(0.006) TCGA-D7-6818-01 2 167334146 167334146 T G SCN7A Missense_Mutation p.I21L 0.31 deleterious(0.04) benign(0.017) TCGA-D7-6818-01 2 170034354 170034354 G T LRP2 Missense_Mutation p.P3451Q 0.19 probably_damaging(1) TCGA-D7-6818-01 2 179583903 179583903 G A TTN Silent p.L8072L 0.16 TCGA-D7-6818-01 2 187693166 187693166 A C ZSWIM2 Missense_Mutation p.L483V 0.15 tolerated(0.15) possibly_damaging(0.457) TCGA-D7-6818-01 2 192815182 192815182 A C TMEFF2 Intron 0.16 TCGA-D7-6818-01 2 27878399 27878399 G A SUPT7L Missense_Mutation p.P272L 0.14 tolerated(0.15) benign(0.004) TCGA-D7-6818-01 2 75276845 75276845 C T TACR1 Missense_Mutation p.R313H 0.14 deleterious(0.01) probably_damaging(0.992) TCGA-D7-6818-01 3 114069713 114069713 A C ZBTB20 Silent p.A404A 0.15 TCGA-D7-6818-01 3 129696060 129696060 A T TRH 3'UTR 0.21 TCGA-D7-6818-01 3 134322598 134322598 A G KY Silent p.G603G 0.07 TCGA-D7-6818-01 3 147128310 147128310 C T ZIC1 Silent p.A137A 0.36 TCGA-D7-6818-01 3 171965423 171965423 A G FNDC3B Missense_Mutation p.H122R 0.24 tolerated(0.25) possibly_damaging(0.54) TCGA-D7-6818-01 3 178560470 178560470 T G KCNMB2 Missense_Mutation p.N151K 0.21 deleterious(0.01) benign(0.371) TCGA-D7-6818-01 3 18457585 18457585 A C SATB1 Silent p.S143S 0.14 TCGA-D7-6818-01 3 192516834 192516834 A C MB21D2 Missense_Mutation p.L273V 0.11 deleterious(0) probably_damaging(1) TCGA-D7-6818-01 3 195474111 195474111 C T MUC4 Missense_Mutation p.R5392H 0.19 benign(0.006) TCGA-D7-6818-01 3 37365106 37365107 - A GOLGA4 Frame_Shift_Ins p.S601Kfs*19 0.26 TCGA-D7-6818-01 3 52428625 52428625 G A DNAH1 Missense_Mutation p.V3591M 0.23 benign(0.047) TCGA-D7-6818-01 3 64635379 64635379 G A ADAMTS9 Silent p.I513I 0.24 TCGA-D7-6818-01 3 73432439 73432439 T G PDZRN3 3'UTR 0.30 TCGA-D7-6818-01 4 126336146 126336146 A G FAT4 Missense_Mutation p.S2010G 0.23 benign(0.393) TCGA-D7-6818-01 4 20521042 20521042 A G SLIT2 Missense_Mutation p.S366G 0.12 tolerated(1) benign(0) TCGA-D7-6818-01 4 68780403 68780403 C T TMPRSS11A Missense_Mutation p.S336N 0.23 tolerated(0.07) possibly_damaging(0.697) TCGA-D7-6818-01 4 73169658 73169658 A T ADAMTS3 Silent p.P800P 0.23 TCGA-D7-6818-01 4 76442037 76442037 G C THAP6 Missense_Mutation p.D46H 0.25 tolerated(0.1) possibly_damaging(0.766) TCGA-D7-6818-01 4 83822021 83822021 C A THAP9 Silent p.G22G 0.29 TCGA-D7-6818-01 4 96140365 96140365 T C UNC5C Missense_Mutation p.N467S 0.21 tolerated(0.07) benign(0.205) TCGA-D7-6818-01 5 112478959 112478959 C T MCC Silent p.A280A 0.49 TCGA-D7-6818-01 5 140208881 140208881 A G PCDHA6 Missense_Mutation p.K402R 0.15 tolerated_low_confidence(0.12) benign(0.396) TCGA-D7-6818-01 5 147040689 147040689 A G JAKMIP2 Missense_Mutation p.L150P 0.19 deleterious(0.02) possibly_damaging(0.777) TCGA-D7-6818-01 5 147480060 147480060 T C SPINK5 Missense_Mutation p.L379P 0.08 deleterious(0.02) probably_damaging(0.99) TCGA-D7-6818-01 5 149227238 149227238 C T PPARGC1B 3'UTR 0.50 TCGA-D7-6818-01 5 169535259 169535259 A G FOXI1 Missense_Mutation p.T261A 0.24 tolerated(0.51) benign(0) TCGA-D7-6818-01 5 33588882 33588882 G A ADAMTS12 Missense_Mutation p.A896V 0.10 tolerated(0.12) benign(0.212) TCGA-D7-6818-01 5 35991293 35991293 A G UGT3A1 Missense_Mutation p.V17A 0.09 tolerated(0.5) benign(0.05) TCGA-D7-6818-01 5 37292998 37292998 T G NUP155 Missense_Mutation p.Q1340H 0.17 tolerated(0.55) benign(0.004) TCGA-D7-6818-01 5 39381699 39381699 A C DAB2 Missense_Mutation p.L454R 0.10 deleterious(0) possibly_damaging(0.786) TCGA-D7-6818-01 5 61747732 61747732 T G IPO11 Missense_Mutation p.L203R 0.22 deleterious(0) probably_damaging(1) TCGA-D7-6818-01 5 7698445 7698445 A C ADCY2 Missense_Mutation p.K356T 0.17 deleterious(0.02) benign(0.376) TCGA-D7-6818-01 6 109766483 109766483 C T MICAL1 Missense_Mutation p.R933Q 0.15 deleterious(0) probably_damaging(0.975) TCGA-D7-6818-01 6 118556704 118556704 A C SLC35F1 Silent p.R128R 0.14 TCGA-D7-6818-01 6 144844177 144844177 T G UTRN Missense_Mutation p.L1920R 0.14 tolerated(0.14) possibly_damaging(0.796) TCGA-D7-6818-01 6 152809633 152809633 T G SYNE1 Missense_Mutation p.E315D 0.15 benign(0.001) TCGA-D7-6818-01 6 26156698 26156698 C T HIST1H1E Missense_Mutation p.S27F 0.10 deleterious(0.01) benign(0.265) TCGA-D7-6818-01 6 31691171 31691171 T C C6orf25 Missense_Mutation p.F4S 0.19 tolerated_low_confidence(0.21) possibly_damaging(0.504) TCGA-D7-6818-01 6 4892402 4892402 C T CDYL Silent p.S160S 0.18 TCGA-D7-6818-01 6 54191625 54191625 T A TINAG Missense_Mutation p.F179I 0.30 deleterious(0) possibly_damaging(0.49) TCGA-D7-6818-01 6 55406891 55406891 T A HMGCLL1 Missense_Mutation p.E82D 0.22 deleterious(0.01) probably_damaging(0.992) TCGA-D7-6818-01 6 70042852 70042852 T C BAI3 Missense_Mutation p.L1047P 0.20 deleterious(0) probably_damaging(0.999) TCGA-D7-6818-01 6 88173942 88173942 T G C6ORF165 Missense_Mutation p.L615V 0.16 deleterious(0) probably_damaging(0.989) TCGA-D7-6818-01 6 97626443 97626443 T A MMS22L Missense_Mutation p.Q852L 0.20 deleterious(0) probably_damaging(0.979) TCGA-D7-6818-01 7 111640575 111640575 A G DOCK4 Missense_Mutation p.F46L 0.30 deleterious(0.04) benign(0.013) TCGA-D7-6818-01 7 11676525 11676525 C T THSD7A Nonsense_Mutation p.W85* 0.15 TCGA-D7-6818-01 7 157931083 157931083 A T PTPRN2 Missense_Mutation p.H345Q 0.30 tolerated(0.59) benign(0.001) TCGA-D7-6818-01 7 31682809 31682809 T G CCDC129 Missense_Mutation p.F635V 0.14 tolerated(0.33) benign(0.064) TCGA-D7-6818-01 7 42005998 42005998 C T GLI3 Silent p.V891V 0.19 TCGA-D7-6818-01 7 64452191 64452191 A T ERV3-1 Missense_Mutation p.L405H 0.21 deleterious(0.01) possibly_damaging(0.895) TCGA-D7-6818-01 7 96651605 96651605 A C DLX5 Nonsense_Mutation p.Y144* 0.26 TCGA-D7-6818-01 7 98630646 98630646 G A SMURF1 Intron 0.28 TCGA-D7-6818-01 8 10466216 10466216 T G RP1L1 Missense_Mutation p.S1798R 0.12 unknown(0) TCGA-D7-6818-01 8 105263871 105263871 T G RIMS2 Silent p.S1291S 0.15 TCGA-D7-6818-01 8 108264166 108264166 T C ANGPT1 Missense_Mutation p.N472D 0.17 tolerated(0.06) probably_damaging(0.998) TCGA-D7-6818-01 8 145998889 145998889 T C ZNF34 Missense_Mutation p.K482R 0.13 deleterious(0.03) probably_damaging(0.998) TCGA-D7-6818-01 8 15480646 15480646 T G TUSC3 Missense_Mutation p.F66V 0.15 tolerated(0.17) benign(0.001) TCGA-D7-6818-01 8 2823471 2823471 T G CSMD1 Missense_Mutation p.S3036R 0.34 possibly_damaging(0.462) TCGA-D7-6818-01 8 61655158 61655158 T G CHD7 Silent p.T389T 0.21 TCGA-D7-6818-01 8 65527645 65527645 T G CYP7B1 Missense_Mutation p.K332T 0.11 deleterious(0.03) probably_damaging(0.988) TCGA-D7-6818-01 8 73848300 73848300 A T KCNB2 Missense_Mutation p.E237V 0.15 deleterious(0) probably_damaging(1) TCGA-D7-6818-01 8 77616403 77616403 T C ZFHX4 Missense_Mutation p.L27P 0.19 possibly_damaging(0.883) TCGA-D7-6818-01 8 92030645 92030645 C G TMEM55A Silent p.V153V 0.10 TCGA-D7-6818-01 9 116155727 116155727 G A ALAD Missense_Mutation p.T38M 0.16 deleterious(0.01) benign(0.369) TCGA-D7-6818-01 9 121976287 121976287 A G BRINP1 Missense_Mutation p.C278R 0.30 deleterious(0.02) probably_damaging(0.962) TCGA-D7-6818-01 9 138378915 138378916 GA - PPP1R26 Frame_Shift_Del p.S854Qfs*116 0.23 TCGA-D7-6818-01 9 139091542 139091542 C T LHX3 Missense_Mutation p.E151K 0.11 deleterious(0) probably_damaging(0.924) TCGA-D7-6818-01 9 19346825 19346825 A C DENND4C Missense_Mutation p.K1304T 0.15 deleterious(0.03) possibly_damaging(0.682) TCGA-D7-6818-01 9 8341129 8341129 C A PTPRD Missense_Mutation p.G1696V 0.15 deleterious(0) probably_damaging(1) TCGA-D7-6818-01 9 90581974 90581974 T G CDK20 3'UTR 0.13 TCGA-D7-6818-01 X 105132295 105132295 A C NRK Missense_Mutation p.E87D 0.30 deleterious(0) probably_damaging(0.916) TCGA-D7-6818-01 X 105189886 105189886 A G NRK Missense_Mutation p.D1362G 0.35 tolerated_low_confidence(0.05) probably_damaging(0.993) TCGA-D7-6818-01 X 106110054 106110054 A G TBC1D8B Missense_Mutation p.E897G 0.09 deleterious(0) benign(0.001) TCGA-D7-6818-01 X 109695009 109695009 G T RGAG1 Silent p.P388P 0.28 TCGA-D7-6818-01 X 109919383 109919383 T G CHRDL1 3'UTR 0.28 TCGA-D7-6818-01 X 12940244 12940244 C T TLR8 Missense_Mutation p.R1029W 0.62 deleterious(0.03) probably_damaging(0.915) TCGA-D7-6818-01 X 139866175 139866175 T G CDR1 Missense_Mutation p.E119D 0.21 deleterious(0.02) benign(0.014) TCGA-D7-6818-01 X 140995251 140995251 T G MAGEC1 Missense_Mutation p.D687E 0.58 tolerated_low_confidence(0.08) benign(0.417) TCGA-D7-6818-01 X 141290853 141290853 T C MAGEC2 Silent p.S307S 0.26 TCGA-D7-6818-01 X 148797474 148797474 A G MAGEA11 Missense_Mutation p.I110V 0.64 tolerated(0.1) benign(0.002) TCGA-D7-6818-01 X 26212865 26212865 G A MAGEB6 Missense_Mutation p.C301Y 0.21 tolerated(0.08) benign(0.123) TCGA-D7-6818-01 X 32430014 32430014 T G DMD Missense_Mutation p.K1363T 0.39 possibly_damaging(0.888) TCGA-D7-6818-01 X 34961619 34961619 G A FAM47B Missense_Mutation p.R224H 0.23 tolerated(0.56) benign(0.002) TCGA-D7-6818-01 X 52825285 52825285 T A SPANXN5 3'UTR 0.31 TCGA-D7-6818-01 X 64959795 64959795 T G MSN 3'UTR 0.33 TCGA-D7-6820-01 10 119133926 119133926 G A PDZD8 Silent p.I271I 0.36 TCGA-D7-6820-01 10 61424004 61424004 C T SLC16A9 Silent p.A139A 0.21 TCGA-D7-6820-01 11 121032936 121032936 C T TECTA Missense_Mutation p.P1710L 0.07 deleterious(0) benign(0.038) TCGA-D7-6820-01 11 124189623 124189623 T C OR8D2 Silent p.T157T 0.18 TCGA-D7-6820-01 11 1774867 1774867 C T CTSD Missense_Mutation p.G369S 0.19 deleterious(0.03) probably_damaging(0.996) TCGA-D7-6820-01 11 5410875 5410875 C G OR51M1 Missense_Mutation p.L83V 0.11 tolerated(0.14) probably_damaging(0.998) TCGA-D7-6820-01 11 5474876 5474876 C A OR51I2 Missense_Mutation p.P53H 0.18 deleterious(0.05) possibly_damaging(0.681) TCGA-D7-6820-01 11 55037971 55037971 G A TRIM48 3'UTR 0.50 TCGA-D7-6820-01 11 55135528 55135528 G T OR4A15 Missense_Mutation p.V57F 0.45 deleterious_low_confidence(0.03) benign(0.037) TCGA-D7-6820-01 11 60183390 60183390 C A MS4A14 Missense_Mutation p.P350T 0.42 tolerated(0.18) benign(0.093) TCGA-D7-6820-01 11 64702220 64702220 G A GPHA2 3'UTR 0.06 TCGA-D7-6820-01 11 76829348 76829348 C T CAPN5 Missense_Mutation p.R373C 0.50 deleterious(0) probably_damaging(1) TCGA-D7-6820-01 11 7982173 7982173 G A NLRP10 Missense_Mutation p.T329M 0.07 tolerated(0.31) benign(0.073) TCGA-D7-6820-01 11 82874885 82874885 G A PCF11 Silent p.V161V 0.11 TCGA-D7-6820-01 12 100206067 100206067 G A ANKS1B Nonsense_Mutation p.Q80* 0.30 TCGA-D7-6820-01 12 112891073 112891073 T A PTPN11 Missense_Mutation p.L136H 0.25 deleterious(0) probably_damaging(0.999) TCGA-D7-6820-01 12 121458498 121458498 T A OASL Nonsense_Mutation p.K471* 0.37 TCGA-D7-6820-01 12 121757590 121757620 AACTGTATTTTTTGATCACATAGCATCCATA C ANAPC5 Intron p.L506_F516delinsC 0.14 TCGA-D7-6820-01 12 122750940 122750940 A C VPS33A Missense_Mutation p.S6A 0.04 tolerated(0.06) benign(0.007) TCGA-D7-6820-01 12 132380356 132380356 T A ULK1 Missense_Mutation p.L78Q 0.12 deleterious(0) probably_damaging(1) TCGA-D7-6820-01 12 32136728 32136728 A G KIAA1551 Missense_Mutation p.T947A 0.19 tolerated(0.15) benign(0.004) TCGA-D7-6820-01 12 48367927 48367927 A G COL2A1 Missense_Mutation p.I1421T 0.32 unknown(0) TCGA-D7-6820-01 12 4874570 4874570 A G GALNT8 Missense_Mutation p.E540G 0.34 deleterious(0.01) probably_damaging(0.997) TCGA-D7-6820-01 12 72863563 72863563 G A TRHDE Silent p.P402P 0.43 TCGA-D7-6820-01 12 81112803 81112803 T - MYF5 Frame_Shift_Del p.S248Pfs*16 0.14 TCGA-D7-6820-01 13 101797186 101797186 A C NALCN Missense_Mutation p.F634C 0.29 deleterious(0) probably_damaging(0.996) TCGA-D7-6820-01 13 73303150 73303150 T A BORA Silent p.P24P 0.32 TCGA-D7-6820-01 13 77636799 77636799 C G MYCBP2 Missense_Mutation p.D4198H 0.41 probably_damaging(0.997) TCGA-D7-6820-01 13 77671759 77671759 G A MYCBP2 Missense_Mutation p.A3139V 0.06 probably_damaging(0.986) TCGA-D7-6820-01 14 104053664 104053664 T A APOPT1 Missense_Mutation p.L160I 0.21 deleterious(0) probably_damaging(1) TCGA-D7-6820-01 14 105201396 105201396 A T ADSSL1 Nonsense_Mutation p.K121* 0.13 TCGA-D7-6820-01 14 51467488 51467488 C T TRIM9 Silent p.T459T 0.35 TCGA-D7-6820-01 15 25327987 25327987 T G SNORD116-16 RNA 0.28 TCGA-D7-6820-01 15 65621754 65621754 C A IGDCC3 Missense_Mutation p.A727S 0.29 tolerated_low_confidence(0.37) benign(0.004) TCGA-D7-6820-01 16 19468202 19468202 C T TMC5 Intron 0.11 TCGA-D7-6820-01 16 2258681 2258681 G C MLST8 Intron 0.15 TCGA-D7-6820-01 16 354405 354405 G C AXIN1 Missense_Mutation p.P385A 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-D7-6820-01 16 67241591 67241591 T C LRRC29 Missense_Mutation p.R197G 0.16 deleterious(0.03) benign(0.016) TCGA-D7-6820-01 16 88884510 88884510 C G GALNS Missense_Mutation p.E463Q 0.29 tolerated(0.26) benign(0.004) TCGA-D7-6820-01 17 16704352 16704352 C G CCDC144A Intron 0.39 TCGA-D7-6820-01 17 21319829 21319829 C T KCNJ12 Missense_Mutation p.A392V 0.08 tolerated(0.28) benign(0) TCGA-D7-6820-01 17 27383346 27383346 C T PIPOX 3'UTR 0.30 TCGA-D7-6820-01 17 46805729 46805729 G A HOXB13 Missense_Mutation p.A76V 0.56 deleterious(0) benign(0.253) TCGA-D7-6820-01 17 62783407 62783407 A T PLEKHM1P RNA 0.21 TCGA-D7-6820-01 17 6927474 6927474 C T BCL6B Silent p.P84P 0.48 TCGA-D7-6820-01 17 7369455 7369455 G A ZBTB4 Silent p.A222A 0.13 TCGA-D7-6820-01 17 7577570 7577570 C T TP53 Missense_Mutation p.M237I 0.38 deleterious(0) probably_damaging(0.997) TCGA-D7-6820-01 17 76167968 76167968 C T SYNGR2 Missense_Mutation p.T209I 0.08 deleterious(0.03) probably_damaging(0.999) TCGA-D7-6820-01 18 14533160 14533160 T C POTEC Missense_Mutation p.S319G 0.25 tolerated(0.14) probably_damaging(0.95) TCGA-D7-6820-01 18 22805131 22805131 G T ZNF521 Silent p.A917A 0.06 TCGA-D7-6820-01 18 24035839 24035839 T C KCTD1 Silent p.G214G 0.46 TCGA-D7-6820-01 18 44549225 44549225 G A TCEB3CL Silent p.V358V 0.03 TCGA-D7-6820-01 18 9255014 9255014 T C ANKRD12 Silent p.Y583Y 0.28 TCGA-D7-6820-01 19 1488005 1488005 G A PCSK4 Silent p.D158D 0.56 TCGA-D7-6820-01 19 48967993 48967993 C T KCNJ14 Nonsense_Mutation p.R424* 0.56 TCGA-D7-6820-01 19 58755353 58755353 C T ZNF544 5'UTR 0.37 TCGA-D7-6820-01 19 58944795 58944795 C T ZNF132 Silent p.R672R 0.39 TCGA-D7-6820-01 1 104118115 104118115 C T AMY2B Nonsense_Mutation p.R352* 0.04 TCGA-D7-6820-01 1 116941382 116941382 T G ATP1A1 Missense_Mutation p.F755C 0.42 deleterious(0) probably_damaging(1) TCGA-D7-6820-01 1 120439012 120439012 C T ADAM30 5'UTR 0.60 TCGA-D7-6820-01 1 152190998 152190998 C T HRNR Missense_Mutation p.S1036N 0.03 unknown(0) TCGA-D7-6820-01 1 152285533 152285533 C T FLG Missense_Mutation p.G610E 0.34 probably_damaging(1) TCGA-D7-6820-01 1 152636662 152636662 G C LCE2D Missense_Mutation p.K27N 0.31 deleterious_low_confidence(0.04) unknown(0) TCGA-D7-6820-01 1 160340766 160340766 C T NHLH1 Missense_Mutation p.T82M 0.35 deleterious(0.02) probably_damaging(0.938) TCGA-D7-6820-01 1 176709162 176709162 G C PAPPA2 Silent p.V1327V 0.16 TCGA-D7-6820-01 1 197021789 197021789 C A F13B Silent p.V510V 0.29 TCGA-D7-6820-01 1 203134527 203134527 C T ADORA1 Silent p.G160G 0.12 TCGA-D7-6820-01 1 232600638 232600638 G A SIPA1L2 Missense_Mutation p.S923F 0.04 deleterious(0) probably_damaging(0.998) TCGA-D7-6820-01 20 21306950 21306950 G A XRN2 Missense_Mutation p.D37N 0.12 tolerated(0.13) possibly_damaging(0.812) TCGA-D7-6820-01 20 23016831 23016831 G C SSTR4 Missense_Mutation p.K237N 0.40 deleterious(0) probably_damaging(0.969) TCGA-D7-6820-01 20 25597072 25597072 G C NANP Missense_Mutation p.A79G 0.07 deleterious(0.01) benign(0.405) TCGA-D7-6820-01 20 60582625 60582625 G C TAF4 Missense_Mutation p.P651R 0.18 probably_damaging(0.977) TCGA-D7-6820-01 22 26224916 26224916 C T MYO18B Missense_Mutation p.T987M 0.52 deleterious(0.03) possibly_damaging(0.739) TCGA-D7-6820-01 22 36690172 36690172 C T MYH9 Missense_Mutation p.R1268H 0.47 possibly_damaging(0.77) TCGA-D7-6820-01 22 40719270 40719270 C T TNRC6B 3'UTR 0.08 TCGA-D7-6820-01 2 107423080 107423080 A T ST6GAL2 3'UTR 0.28 TCGA-D7-6820-01 2 132285734 132285734 A C CCDC74A Missense_Mutation p.H64P 0.36 deleterious(0) probably_damaging(0.999) TCGA-D7-6820-01 2 174047608 174047608 G A MLTK Missense_Mutation p.D92N 0.34 deleterious(0.01) probably_damaging(0.94) TCGA-D7-6820-01 2 186678562 186678562 G T FSIP2 Silent p.T6795T 0.62 TCGA-D7-6820-01 2 188348868 188348868 T A TFPI Missense_Mutation p.K204M 0.13 deleterious(0) possibly_damaging(0.765) TCGA-D7-6820-01 2 196729058 196729058 C G DNAH7 Missense_Mutation p.D2441H 0.05 tolerated(0.06) probably_damaging(1) TCGA-D7-6820-01 2 212288966 212288966 C T ERBB4 Missense_Mutation p.R927Q 0.35 deleterious(0.03) possibly_damaging(0.549) TCGA-D7-6820-01 2 238280910 238280910 G A COL6A3 Silent p.Y1250Y 0.35 TCGA-D7-6820-01 2 25656795 25656795 G C DTNB Missense_Mutation p.L443V 0.10 deleterious(0) probably_damaging(0.967) TCGA-D7-6820-01 2 25966067 25966067 A C ASXL2 Missense_Mutation p.S1047A 0.25 tolerated(0.64) benign(0.008) TCGA-D7-6820-01 2 27838091 27838091 G A ZNF512 Nonsense_Mutation p.W396* 0.23 TCGA-D7-6820-01 2 37455880 37455880 A G CEBPZ Silent p.N152N 0.33 TCGA-D7-6820-01 2 86378626 86378626 C T IMMT Missense_Mutation p.D399N 0.09 deleterious(0) benign(0.305) TCGA-D7-6820-01 3 170244454 170244454 A T SLC7A14 Missense_Mutation p.F91Y 0.51 deleterious(0.01) probably_damaging(1) TCGA-D7-6820-01 3 182587059 182587059 C G ATP11B Silent p.L602L 0.19 TCGA-D7-6820-01 3 33195166 33195166 C A SUSD5 Missense_Mutation p.A320S 0.13 tolerated(0.31) benign(0.01) TCGA-D7-6820-01 3 47364083 47364083 G T KLHL18 Missense_Mutation p.A96S 0.18 tolerated(0.07) possibly_damaging(0.739) TCGA-D7-6820-01 3 62459960 62459960 G T CADPS Missense_Mutation p.T1122N 0.24 tolerated(0.26) benign(0.403) TCGA-D7-6820-01 3 78656095 78656095 A G ROBO1 Missense_Mutation p.L1511P 0.03 tolerated(0.14) probably_damaging(0.991) TCGA-D7-6820-01 3 89390956 89390956 T C EPHA3 Missense_Mutation p.V341A 0.05 deleterious(0.02) probably_damaging(0.995) TCGA-D7-6820-01 3 9100112 9100112 C T SRGAP3 Silent p.R282R 0.07 TCGA-D7-6820-01 3 99569912 99569912 A T FILIP1L Nonsense_Mutation p.L203* 0.10 TCGA-D7-6820-01 4 186097014 186097014 C T KIAA1430 Missense_Mutation p.D416N 0.61 tolerated(0.39) benign(0.124) TCGA-D7-6820-01 5 140250587 140250587 G A PCDHA11 Silent p.T633T 0.12 TCGA-D7-6820-01 5 167858361 167858361 G A WWC1 Nonsense_Mutation p.W731* 0.43 TCGA-D7-6820-01 5 61659532 61659532 C G KIF2A Missense_Mutation p.Q425E 0.45 deleterious(0) probably_damaging(0.931) TCGA-D7-6820-01 6 106991352 106991352 G A AIM1 Missense_Mutation p.C1232Y 0.34 tolerated(0.28) probably_damaging(0.939) TCGA-D7-6820-01 6 168440804 168440804 C T KIF25 Missense_Mutation p.A185V 0.09 tolerated(0.47) benign(0.172) TCGA-D7-6820-01 6 169626379 169626379 G A THBS2 Nonsense_Mutation p.R812* 0.29 TCGA-D7-6820-01 6 33636823 33636823 G C ITPR3 Missense_Mutation p.W693C 0.32 deleterious(0.02) benign(0.104) TCGA-D7-6820-01 6 52101719 52101719 T G IL17F 3'UTR 0.36 TCGA-D7-6820-01 6 71562283 71562283 G A SMAP1 Silent p.T235T 0.22 TCGA-D7-6820-01 6 7373546 7373546 T G CAGE1 Missense_Mutation p.R502S 0.09 deleterious(0.03) benign(0.06) TCGA-D7-6820-01 6 91269867 91269867 C T MAP3K7 Missense_Mutation p.C137Y 0.37 deleterious(0) probably_damaging(0.999) TCGA-D7-6820-01 7 127953233 127953233 C T RBM28 Missense_Mutation p.E714K 0.09 tolerated(1) benign(0) TCGA-D7-6820-01 7 150745867 150745867 C A ASIC3 5'Flank 0.56 TCGA-D7-6820-01 7 20824871 20824871 C T SP8 Missense_Mutation p.G189R 0.14 deleterious(0.01) possibly_damaging(0.681) TCGA-D7-6820-01 7 44054212 44054212 C A SPDYE1 3'Flank 0.34 TCGA-D7-6820-01 8 11842018 11842018 C T DEFB135 Silent p.N51N 0.83 TCGA-D7-6820-01 8 143993297 143993297 G C CYP11B2 3'UTR 0.24 TCGA-D7-6820-01 8 32505536 32505536 G A NRG1 Intron 0.45 TCGA-D7-6820-01 8 72977792 72977792 A G TRPA1 Missense_Mutation p.V149A 0.39 tolerated(0.18) possibly_damaging(0.64) TCGA-D7-6820-01 9 127642779 127642779 C T GOLGA1 3'UTR 0.05 TCGA-D7-6820-01 9 135374805 135374805 C T C9orf171 Silent p.H150H 0.57 TCGA-D7-6820-01 9 140128709 140128709 G C SLC34A3 Silent p.V358V 0.67 TCGA-D7-6820-01 9 39178303 39178303 T C CNTNAP3 Missense_Mutation p.K198R 0.21 tolerated(0.1) benign(0.008) TCGA-D7-6820-01 X 132351883 132351883 G A TFDP3 Silent p.G135G 0.61 TCGA-D7-6820-01 X 48418150 48418150 G T TBC1D25 Missense_Mutation p.R285L 0.50 tolerated(0.06) probably_damaging(0.97) TCGA-D7-6822-01 10 117026287 117026287 T A ATRNL1 Missense_Mutation p.F596I 0.32 deleterious(0) possibly_damaging(0.622) TCGA-D7-6822-01 10 124273782 124273782 C T HTRA1 Silent p.D450D 0.10 TCGA-D7-6822-01 10 125528097 125528097 C T CPXM2 Missense_Mutation p.R415Q 0.32 deleterious(0) probably_damaging(0.999) TCGA-D7-6822-01 10 134579334 134579334 A G INPP5A Missense_Mutation p.I321V 0.33 tolerated(0.08) benign(0.015) TCGA-D7-6822-01 10 13698746 13698746 G A FRMD4A Missense_Mutation p.T948I 0.49 tolerated(0.3) benign(0.068) TCGA-D7-6822-01 10 31810641 31810641 T A ZEB1 Missense_Mutation p.I794N 0.32 tolerated(0.44) possibly_damaging(0.713) TCGA-D7-6822-01 10 31815887 31815887 G A ZEB1 Missense_Mutation p.E1025K 0.49 deleterious(0.01) probably_damaging(0.991) TCGA-D7-6822-01 10 32323763 32323763 G C KIF5B Silent p.A322A 0.18 TCGA-D7-6822-01 10 53667323 53667323 T C PRKG1 Missense_Mutation p.L252P 0.41 deleterious(0) probably_damaging(0.994) TCGA-D7-6822-01 10 71868938 71868938 G A H2AFY2 Missense_Mutation p.A310T 0.34 deleterious(0) probably_damaging(0.997) TCGA-D7-6822-01 10 75391755 75391755 G T MYOZ1 Missense_Mutation p.S278Y 0.36 deleterious(0) probably_damaging(0.951) TCGA-D7-6822-01 10 79770279 79770279 G T POLR3A Missense_Mutation p.T531N 0.42 deleterious(0) possibly_damaging(0.757) TCGA-D7-6822-01 10 82369292 82369292 G A SH2D4B Missense_Mutation p.A324T 0.36 deleterious(0) probably_damaging(0.977) TCGA-D7-6822-01 10 87362286 87362286 A C GRID1 Missense_Mutation p.L925R 0.22 tolerated_low_confidence(0.07) probably_damaging(0.999) TCGA-D7-6822-01 11 100920697 100920697 C T PGR Silent p.E817E 0.32 TCGA-D7-6822-01 11 107518203 107518203 T G ELMOD1 Missense_Mutation p.F144V 0.32 tolerated(0.05) benign(0.03) TCGA-D7-6822-01 11 124179779 124179779 T C OR8D1 Missense_Mutation p.K295R 0.41 deleterious(0.02) possibly_damaging(0.543) TCGA-D7-6822-01 11 22294501 22294501 T G ANO5 Missense_Mutation p.L734R 0.36 deleterious(0) probably_damaging(0.949) TCGA-D7-6822-01 11 30516921 30516921 T C MPPED2 Missense_Mutation p.Q153R 0.44 tolerated(0.66) possibly_damaging(0.751) TCGA-D7-6822-01 11 3661431 3661431 C G ART5 Missense_Mutation p.E76D 0.51 tolerated(0.06) benign(0.213) TCGA-D7-6822-01 11 3716775 3716775 C T NUP98 Silent p.L1357L 0.55 TCGA-D7-6822-01 11 43284628 43284628 T G HNRNPKP3 RNA 0.16 TCGA-D7-6822-01 11 49170270 49170270 T G FOLH1 Silent p.R662R 0.33 TCGA-D7-6822-01 11 5021135 5021135 A G OR51L1 Missense_Mutation p.K308R 0.29 tolerated(0.28) benign(0.002) TCGA-D7-6822-01 11 55541616 55541616 G T OR5D13 Missense_Mutation p.G235W 0.41 deleterious(0) probably_damaging(0.998) TCGA-D7-6822-01 11 56058469 56058469 G A OR8H1 Nonsense_Mutation p.Q24* 0.30 TCGA-D7-6822-01 11 56113852 56113852 T C OR8K1 Missense_Mutation p.F113S 0.33 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-D7-6822-01 11 7982281 7982281 C T NLRP10 Missense_Mutation p.R293Q 0.39 tolerated(0.07) possibly_damaging(0.557) TCGA-D7-6822-01 11 82645281 82645281 T C C11orf82 Silent p.S967S 0.44 TCGA-D7-6822-01 11 83177774 83177774 T G DLG2 Missense_Mutation p.K902N 0.32 deleterious(0) probably_damaging(0.995) TCGA-D7-6822-01 11 89768415 89768415 A C TRIM49C Missense_Mutation p.E12D 0.40 tolerated(0.06) benign(0.424) TCGA-D7-6822-01 11 89774338 89774338 A C TRIM49C Missense_Mutation p.S327R 0.30 tolerated(0.19) benign(0.01) TCGA-D7-6822-01 11 89891405 89891405 C T NAALAD2 Missense_Mutation p.R297C 0.26 deleterious(0) possibly_damaging(0.745) TCGA-D7-6822-01 11 94113910 94113910 G A GPR83 Missense_Mutation p.P226L 0.28 tolerated(0.07) possibly_damaging(0.768) TCGA-D7-6822-01 12 118673381 118673381 A C TAOK3 Missense_Mutation p.F178C 0.33 deleterious(0) probably_damaging(0.995) TCGA-D7-6822-01 12 13103044 13103044 C T GPRC5D Missense_Mutation p.R92H 0.60 deleterious(0.01) possibly_damaging(0.529) TCGA-D7-6822-01 12 43771298 43771298 T C ADAMTS20 Missense_Mutation p.K1622R 0.43 tolerated(0.27) benign(0.007) TCGA-D7-6822-01 12 56211464 56211464 G A SARNP Missense_Mutation p.L8F 0.33 deleterious(0.03) benign(0.002) TCGA-D7-6822-01 12 56532198 56532198 T A ESYT1 Missense_Mutation p.V793E 0.57 tolerated(0.27) benign(0.305) TCGA-D7-6822-01 12 56863084 56863084 G T SPRYD4 Missense_Mutation p.G116V 0.28 deleterious(0) probably_damaging(1) TCGA-D7-6822-01 12 57588239 57588239 A G LRP1 Missense_Mutation p.D2674G 0.28 probably_damaging(0.931) TCGA-D7-6822-01 12 77423789 77423789 G A E2F7 Missense_Mutation p.S569L 0.34 tolerated(0.18) benign(0.002) TCGA-D7-6822-01 12 78362351 78362351 T C NAV3 Silent p.S180S 0.39 TCGA-D7-6822-01 12 97098562 97098562 A C C12orf55 Missense_Mutation p.K2172N 0.41 tolerated(0.51) benign(0.002) TCGA-D7-6822-01 13 110822922 110822922 G A COL4A1 Silent p.R1238R 0.33 TCGA-D7-6822-01 13 115057210 115057211 - A UPF3A Frame_Shift_Ins p.E267Rfs*4 0.49 TCGA-D7-6822-01 13 35735957 35735957 C G NBEA Missense_Mutation p.P1311R 0.29 deleterious_low_confidence(0.03) benign(0.003) TCGA-D7-6822-01 13 46357648 46357648 G A SIAH3 Missense_Mutation p.S227L 0.42 deleterious(0.02) possibly_damaging(0.68) TCGA-D7-6822-01 13 61987191 61987191 T G PCDH20 Missense_Mutation p.K347N 0.41 deleterious(0.02) benign(0.07) TCGA-D7-6822-01 13 84453706 84453706 C T SLITRK1 Missense_Mutation p.R646Q 0.32 deleterious(0.02) probably_damaging(0.98) TCGA-D7-6822-01 13 84455053 84455053 A C SLITRK1 Missense_Mutation p.V197G 0.37 deleterious(0) possibly_damaging(0.772) TCGA-D7-6822-01 13 96443303 96443303 C G DNAJC3 3'UTR 0.37 TCGA-D7-6822-01 14 23634555 23634555 C T SLC7A8 Silent p.P149P 0.34 TCGA-D7-6822-01 14 23816789 23816789 C T SLC22A17 Missense_Mutation p.G366S 0.30 tolerated(0.07) probably_damaging(1) TCGA-D7-6822-01 14 45432289 45432289 G C FAM179B Missense_Mutation p.G222A 0.30 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D7-6822-01 14 75296047 75296047 G A YLPM1 Splice_Site p.X2098_splice 0.28 TCGA-D7-6822-01 14 79117589 79117589 T G NRXN3 Missense_Mutation p.F8V 0.21 deleterious(0.02) possibly_damaging(0.834) TCGA-D7-6822-01 14 97000859 97000859 C - PAPOLA Frame_Shift_Del p.P290Lfs*15 0.23 TCGA-D7-6822-01 15 100537680 100537680 G C ADAMTS17 Silent p.P902P 0.17 TCGA-D7-6822-01 15 22382782 22382782 T G OR4N4 Missense_Mutation p.L104V 0.33 tolerated(0.22) probably_damaging(0.997) TCGA-D7-6822-01 15 25320988 25320988 T C SNORD116-9 3'Flank 0.31 TCGA-D7-6822-01 15 33916158 33916158 T A RYR3 Missense_Mutation p.D836E 0.04 possibly_damaging(0.453) TCGA-D7-6822-01 15 34157482 34157482 G A RYR3 3'UTR 0.19 TCGA-D7-6822-01 15 83933195 83933195 G A BNC1 Missense_Mutation p.H270Y 0.32 tolerated(0.09) benign(0.081) TCGA-D7-6822-01 16 21995670 21995670 G A PDZD9 Missense_Mutation p.S178F 0.56 deleterious(0) probably_damaging(0.98) TCGA-D7-6822-01 16 26147171 26147171 G A HS3ST4 Missense_Mutation p.D325N 0.53 tolerated(0.19) possibly_damaging(0.708) TCGA-D7-6822-01 16 31336626 31336626 G C ITGAM Silent p.V803V 0.19 TCGA-D7-6822-01 16 49313480 49313480 A C CBLN1 Missense_Mutation p.I139M 0.29 deleterious(0) probably_damaging(0.971) TCGA-D7-6822-01 16 58572769 58572769 A G CNOT1 Missense_Mutation p.L1681P 0.25 tolerated(0.08) benign(0.162) TCGA-D7-6822-01 16 65016134 65016134 T G CDH11 Missense_Mutation p.K357T 0.26 deleterious(0.01) benign(0.223) TCGA-D7-6822-01 16 67063330 67063330 A C CBFB Missense_Mutation p.D7A 0.33 deleterious(0) benign(0.17) TCGA-D7-6822-01 17 26666522 26666522 G A TNFAIP1 5'UTR 0.35 TCGA-D7-6822-01 17 37618685 37618685 G C CDK12 Missense_Mutation p.D121H 0.41 unknown(0) TCGA-D7-6822-01 17 38433367 38433367 G A WIPF2 Missense_Mutation p.V405I 0.28 tolerated(0.2) benign(0.018) TCGA-D7-6822-01 17 41832885 41832885 G A SOST Missense_Mutation p.A156V 0.40 deleterious(0) benign(0.079) TCGA-D7-6822-01 17 46262095 46262095 C T SKAP1 Missense_Mutation p.R186H 0.51 deleterious(0.02) possibly_damaging(0.72) TCGA-D7-6822-01 17 4995828 4995828 G A ZFP3 Silent p.G343G 0.22 TCGA-D7-6822-01 17 73831582 73831582 G A UNC13D Missense_Mutation p.H586Y 0.89 deleterious(0.01) possibly_damaging(0.72) TCGA-D7-6822-01 17 7577087 7577087 G - TP53 Frame_Shift_Del p.T284Kfs*61 0.40 TCGA-D7-6822-01 17 76394412 76394412 A C PGS1 Missense_Mutation p.D164A 0.24 deleterious(0) probably_damaging(0.994) TCGA-D7-6822-01 17 7918766 7918766 C T GUCY2D Missense_Mutation p.R964C 0.29 deleterious(0) probably_damaging(0.94) TCGA-D7-6822-01 18 25532149 25532149 G C CDH2 Missense_Mutation p.L897V 0.36 deleterious(0) probably_damaging(0.999) TCGA-D7-6822-01 18 25593870 25593870 T G CDH2 Missense_Mutation p.K59T 0.43 tolerated(0.37) benign(0.003) TCGA-D7-6822-01 18 30093154 30093154 C T WBP11P1 RNA 0.45 TCGA-D7-6822-01 18 8113616 8113616 A G PTPRM Silent p.A663A 0.36 TCGA-D7-6822-01 18 8824700 8824700 G A SOGA2 Silent p.A1064A 0.36 TCGA-D7-6822-01 19 12061363 12061363 G T ZNF700 3'UTR 0.15 TCGA-D7-6822-01 19 14730285 14730285 T C EMR3 Splice_Site p.X641_splice 0.08 TCGA-D7-6822-01 19 18054554 18054554 C T CCDC124 3'UTR 0.30 TCGA-D7-6822-01 19 19356206 19356206 G A NCAN Missense_Mutation p.G1193R 0.35 deleterious(0) probably_damaging(1) TCGA-D7-6822-01 19 22942268 22942268 T C ZNF99 Missense_Mutation p.N148S 0.32 tolerated(0.27) benign(0.212) TCGA-D7-6822-01 19 31040160 31040160 A G ZNF536 Missense_Mutation p.T1212A 0.22 tolerated_low_confidence(1) benign(0) TCGA-D7-6822-01 19 3433553 3433553 C T NFIC Silent p.G224G 0.24 TCGA-D7-6822-01 19 37579980 37579980 A G ZNF420 5'UTR 0.22 TCGA-D7-6822-01 19 39233129 39233129 A G CAPN12 Missense_Mutation p.L116P 0.27 deleterious(0) probably_damaging(1) TCGA-D7-6822-01 19 39233131 39233131 A G CAPN12 Silent p.T115T 0.24 TCGA-D7-6822-01 19 3938712 3938712 A G NMRK2 Missense_Mutation p.D93G 0.23 tolerated(0.15) benign(0.012) TCGA-D7-6822-01 19 41269579 41269579 C T SNRPA Nonsense_Mutation p.Q230* 0.06 TCGA-D7-6822-01 19 42181400 42181400 G A CEACAM7 Silent p.L246L 0.11 TCGA-D7-6822-01 19 43372508 43372508 C G PSG1 Splice_Site p.X330_splice 0.14 TCGA-D7-6822-01 19 47424393 47424393 T G ARHGAP35 Missense_Mutation p.L821V 0.39 tolerated(0.57) benign(0.232) TCGA-D7-6822-01 19 50840306 50840306 C T NAPSB RNA 0.22 TCGA-D7-6822-01 19 51021951 51021951 C G LRRC4B Missense_Mutation p.C340S 0.26 deleterious(0) probably_damaging(1) TCGA-D7-6822-01 19 53669151 53669151 T A ZNF665 Nonsense_Mutation p.R198* 0.21 TCGA-D7-6822-01 19 53669240 53669240 T G ZNF665 Missense_Mutation p.E168A 0.20 deleterious(0.02) benign(0.02) TCGA-D7-6822-01 19 53912969 53912969 G T ZNF765 3'UTR 0.13 TCGA-D7-6822-01 19 54496071 54496071 G A CACNG6 5'UTR 0.29 TCGA-D7-6822-01 19 54866947 54866947 C T LAIR1 Missense_Mutation p.R265Q 0.21 tolerated(0.95) benign(0) TCGA-D7-6822-01 19 56918453 56918453 A G ZNF583 5'UTR 0.22 TCGA-D7-6822-01 19 57066167 57066167 A C ZFP28 Missense_Mutation p.K671N 0.16 deleterious(0) probably_damaging(0.992) TCGA-D7-6822-01 19 9492522 9492522 A C ZNF177 3'UTR 0.39 TCGA-D7-6822-01 1 112308719 112308719 C A DDX20 Missense_Mutation p.T558N 0.04 tolerated(0.44) benign(0.002) TCGA-D7-6822-01 1 12169629 12169629 C T TNFRSF8 Missense_Mutation p.A143V 0.80 deleterious(0) probably_damaging(0.969) TCGA-D7-6822-01 1 152283455 152283455 T C FLG Missense_Mutation p.R1303G 0.15 benign(0.152) TCGA-D7-6822-01 1 152329104 152329104 T G FLG2 Silent p.G386G 0.11 TCGA-D7-6822-01 1 152329376 152329376 T G FLG2 Missense_Mutation p.S296R 0.09 unknown(0) TCGA-D7-6822-01 1 156377704 156377704 G A C1orf61 Missense_Mutation p.R79W 0.21 tolerated_low_confidence(0.08) probably_damaging(0.942) TCGA-D7-6822-01 1 158324317 158324317 T A CD1E Missense_Mutation p.V70D 0.28 tolerated(0.62) benign(0.001) TCGA-D7-6822-01 1 175048581 175048581 G A TNN Silent p.A174A 0.84 TCGA-D7-6822-01 1 181726082 181726082 T C CACNA1E Silent p.D1383D 0.18 TCGA-D7-6822-01 1 183253135 183253135 T C NMNAT2 Missense_Mutation p.E190G 0.16 tolerated(0.08) probably_damaging(0.946) TCGA-D7-6822-01 1 186024787 186024787 A C HMCN1 Missense_Mutation p.K2375N 0.15 probably_damaging(0.997) TCGA-D7-6822-01 1 186060048 186060048 C T HMCN1 Nonsense_Mutation p.R3296* 0.23 TCGA-D7-6822-01 1 196311337 196311337 T G KCNT2 Missense_Mutation p.E475D 0.39 tolerated(0.09) probably_damaging(0.992) TCGA-D7-6822-01 1 196796126 196796126 A T CFHR1 Missense_Mutation p.R141W 0.12 deleterious(0.02) probably_damaging(0.914) TCGA-D7-6822-01 1 196797212 196797212 T C CFHR1 Missense_Mutation p.V148A 0.43 tolerated(1) unknown(0) TCGA-D7-6822-01 1 196927034 196927034 A C CFHR2 Missense_Mutation p.K148N 0.16 tolerated(0.06) benign(0.02) TCGA-D7-6822-01 1 197159959 197159959 A T ZBTB41 Missense_Mutation p.F444Y 0.39 tolerated(0.06) benign(0.137) TCGA-D7-6822-01 1 200569554 200569554 A G KIF14 Missense_Mutation p.C744R 0.44 deleterious(0) possibly_damaging(0.635) TCGA-D7-6822-01 1 205814505 205814505 C T PM20D1 Missense_Mutation p.R146H 0.17 tolerated(0.42) benign(0.013) TCGA-D7-6822-01 1 216369967 216369967 T G USH2A Missense_Mutation p.K1393N 0.18 benign(0.158) TCGA-D7-6822-01 1 216372990 216372990 A T USH2A Missense_Mutation p.S1264T 0.42 benign(0.022) TCGA-D7-6822-01 1 218607762 218607762 A C TGFB2 Missense_Mutation p.K270N 0.17 tolerated(0.25) benign(0.106) TCGA-D7-6822-01 1 224444779 224444779 T G NVL Intron 0.26 TCGA-D7-6822-01 1 225590925 225590925 A G LBR 3'UTR 0.22 TCGA-D7-6822-01 1 237666672 237666672 T C RYR2 Missense_Mutation p.L827P 0.20 benign(0.025) TCGA-D7-6822-01 1 237841399 237841399 A C RYR2 Missense_Mutation p.K2961T 0.31 probably_damaging(0.913) TCGA-D7-6822-01 1 247836046 247836046 A C OR13G1 Missense_Mutation p.L100V 0.25 tolerated(0.05) benign(0) TCGA-D7-6822-01 1 248402431 248402431 C T OR2M4 Silent p.S67S 0.28 TCGA-D7-6822-01 1 35370218 35370218 T C DLGAP3 Missense_Mutation p.K256R 0.35 tolerated(0.72) probably_damaging(0.971) TCGA-D7-6822-01 1 43775063 43775063 C T TIE1 Missense_Mutation p.T398I 0.31 tolerated(0.39) possibly_damaging(0.685) TCGA-D7-6822-01 1 45484944 45484944 A T ZSWIM5 Missense_Mutation p.F914I 0.40 deleterious(0) unknown(0) TCGA-D7-6822-01 1 70501901 70501901 G A LRRC7 Missense_Mutation p.G660E 0.30 deleterious(0) benign(0.305) TCGA-D7-6822-01 1 71477911 71477911 T C PTGER3 Intron 0.35 TCGA-D7-6822-01 1 71477912 71477912 G T PTGER3 Intron 0.35 TCGA-D7-6822-01 1 79392725 79392725 G A ELTD1 Missense_Mutation p.S310L 0.36 tolerated(0.11) benign(0.072) TCGA-D7-6822-01 1 809763 809763 C A FAM41C 5'Flank 0.39 TCGA-D7-6822-01 20 10030351 10030351 C T ANKEF1 Silent p.I378I 0.25 TCGA-D7-6822-01 20 13140736 13140736 G A SPTLC3 Missense_Mutation p.R501Q 0.24 deleterious(0) probably_damaging(1) TCGA-D7-6822-01 20 21687603 21687603 G T PAX1 Missense_Mutation p.G272W 0.22 deleterious(0) probably_damaging(0.985) TCGA-D7-6822-01 20 31021453 31021453 G C ASXL1 Missense_Mutation p.E484D 0.16 tolerated(0.1) benign(0.283) TCGA-D7-6822-01 20 3578562 3578562 T G ATRN Missense_Mutation p.L1160R 0.29 deleterious(0.01) probably_damaging(0.954) TCGA-D7-6822-01 20 44587966 44587966 C T ZNF335 Silent p.G709G 0.27 TCGA-D7-6822-01 20 44596236 44596236 A T ZNF335 Silent p.R284R 0.38 TCGA-D7-6822-01 20 61939894 61939894 G A COL20A1 Missense_Mutation p.G259D 0.17 deleterious(0) probably_damaging(1) TCGA-D7-6822-01 20 62851193 62851193 C T MYT1 Missense_Mutation p.A700V 0.23 benign(0.013) TCGA-D7-6822-01 20 8696857 8696858 - T PLCB1 Intron 0.21 TCGA-D7-6822-01 20 8755266 8755266 A C PLCB1 Missense_Mutation p.K1004T 0.30 deleterious(0.04) possibly_damaging(0.665) TCGA-D7-6822-01 21 11039362 11039362 T G BAGE2 RNA 0.08 TCGA-D7-6822-01 21 28327188 28327188 A C ADAMTS5 Missense_Mutation p.D369E 0.66 deleterious(0) possibly_damaging(0.615) TCGA-D7-6822-01 21 30927571 30927571 T G GRIK1 Missense_Mutation p.E803D 0.27 tolerated(0.19) benign(0.003) TCGA-D7-6822-01 21 38390197 38390197 G A RIPPLY3 Missense_Mutation p.R88H 0.34 deleterious(0.01) possibly_damaging(0.666) TCGA-D7-6822-01 21 39755499 39755499 G A ERG Silent p.H429H 0.54 TCGA-D7-6822-01 22 25251628 25251628 A G SGSM1 Missense_Mutation p.N261S 0.29 deleterious(0.02) possibly_damaging(0.78) TCGA-D7-6822-01 22 36623750 36623750 C T APOL2 Silent p.A238A 0.30 TCGA-D7-6822-01 22 41670686 41670686 G A RANGAP1 Missense_Mutation p.A53V 0.36 deleterious(0.04) possibly_damaging(0.78) TCGA-D7-6822-01 2 107050724 107050724 A T RGPD3 Missense_Mutation p.I722N 0.23 deleterious(0) benign(0.346) TCGA-D7-6822-01 2 125521689 125521689 T G CNTNAP5 Missense_Mutation p.L832R 0.34 deleterious(0.02) probably_damaging(0.918) TCGA-D7-6822-01 2 167284375 167284375 T G SCN7A Missense_Mutation p.T926P 0.26 deleterious(0) probably_damaging(1) TCGA-D7-6822-01 2 167297957 167297957 T G SCN7A Missense_Mutation p.Q702H 0.43 deleterious(0.02) benign(0.06) TCGA-D7-6822-01 2 168101280 168101280 T C XIRP2 Silent p.T1126T 0.39 TCGA-D7-6822-01 2 168114459 168114459 T G XIRP2 3'UTR 0.34 TCGA-D7-6822-01 2 169659047 169659047 C G NOSTRIN 5'UTR 0.38 TCGA-D7-6822-01 2 169780314 169780314 C A ABCB11 Missense_Mutation p.D1262Y 0.34 deleterious(0) probably_damaging(1) TCGA-D7-6822-01 2 176945351 176945351 C T EVX2 Silent p.A305A 0.50 TCGA-D7-6822-01 2 179391989 179391989 T A TTN Missense_Mutation p.D35909V 0.32 TCGA-D7-6822-01 2 179466402 179466402 C A TTN Missense_Mutation p.C18472F 0.24 TCGA-D7-6822-01 2 179500379 179500379 G T TTN Missense_Mutation p.A13891D 0.50 TCGA-D7-6822-01 2 179522877 179522877 T G TTN Missense_Mutation p.E12573D 0.30 TCGA-D7-6822-01 2 179583663 179583663 T G TTN Missense_Mutation p.E8088D 0.36 TCGA-D7-6822-01 2 179595679 179595679 T G TTN Missense_Mutation p.S5905R 0.33 TCGA-D7-6822-01 2 179604391 179604391 T C TTN Silent p.E4523E 0.34 TCGA-D7-6822-01 2 179640745 179640745 A C TTN Missense_Mutation p.F1949C 0.34 TCGA-D7-6822-01 2 179640748 179640748 T G TTN Missense_Mutation p.E1948A 0.34 TCGA-D7-6822-01 2 179643981 179643981 T C TTN Missense_Mutation p.K1313R 0.36 TCGA-D7-6822-01 2 198968559 198968559 T G PLCL1 Missense_Mutation p.F1002V 0.35 deleterious(0.02) benign(0.434) TCGA-D7-6822-01 2 210517892 210517892 A C MAP2 5'UTR 0.33 TCGA-D7-6822-01 2 210561456 210561456 A C MAP2 Missense_Mutation p.E1457D 0.41 deleterious(0.02) probably_damaging(0.959) TCGA-D7-6822-01 2 215797379 215797379 T C ABCA12 Silent p.Q2589Q 0.43 TCGA-D7-6822-01 2 215840651 215840651 G A ABCA12 Missense_Mutation p.L1747F 0.26 tolerated(0.52) benign(0.011) TCGA-D7-6822-01 2 223773616 223773616 T G ACSL3 Nonsense_Mutation p.Y42* 0.24 TCGA-D7-6822-01 2 225796292 225796292 A C DOCK10 Missense_Mutation p.L73V 0.29 deleterious(0) benign(0.12) TCGA-D7-6822-01 2 229890475 229890475 T C PID1 Missense_Mutation p.K207R 0.30 tolerated(0.33) probably_damaging(0.994) TCGA-D7-6822-01 2 234652384 234652384 T A UGT1A10 Intron 0.39 TCGA-D7-6822-01 2 27560307 27560307 T C GTF3C2 Intron 0.24 TCGA-D7-6822-01 2 50724791 50724791 T C NRXN1 Silent p.T893T 0.34 TCGA-D7-6822-01 2 62106082 62106082 C A CCT4 Missense_Mutation p.L148F 0.49 deleterious(0.01) probably_damaging(0.995) TCGA-D7-6822-01 2 68480181 68480181 T A PPP3R1 5'Flank 0.27 TCGA-D7-6822-01 2 74689328 74689328 C T MOGS Missense_Mutation p.D530N 0.37 tolerated(0.2) benign(0.178) TCGA-D7-6822-01 2 99778961 99778961 T C LIPT1 Silent p.L181L 0.28 TCGA-D7-6822-01 3 126194495 126194495 C G ZXDC Missense_Mutation p.G72R 0.35 deleterious_low_confidence(0) benign(0.001) TCGA-D7-6822-01 3 132319585 132319585 C T ACKR4 Missense_Mutation p.T115I 0.14 deleterious(0.04) possibly_damaging(0.486) TCGA-D7-6822-01 3 140281094 140281094 A C CLSTN2 Missense_Mutation p.E719A 0.28 tolerated(0.83) benign(0.002) TCGA-D7-6822-01 3 164758792 164758792 G A SI Missense_Mutation p.L699F 0.29 deleterious(0.03) benign(0.404) TCGA-D7-6822-01 3 167240189 167240189 A C WDR49 Missense_Mutation p.I544M 0.39 tolerated(0.1) benign(0.302) TCGA-D7-6822-01 3 195515821 195515821 G C MUC4 Missense_Mutation p.S877C 0.21 unknown(0) TCGA-D7-6822-01 3 26751365 26751365 T G LRRC3B Missense_Mutation p.L68V 0.22 tolerated(0.67) benign(0.15) TCGA-D7-6822-01 3 37365440 37365440 C T GOLGA4 Missense_Mutation p.S710L 0.20 possibly_damaging(0.844) TCGA-D7-6822-01 3 3886560 3886560 T C LRRN1 Silent p.L79L 0.21 TCGA-D7-6822-01 3 41266113 41266113 C T CTNNB1 Missense_Mutation p.S37F 0.18 deleterious(0) probably_damaging(0.962) TCGA-D7-6822-01 3 41268778 41268778 C A CTNNB1 Missense_Mutation p.T339N 0.11 deleterious(0) possibly_damaging(0.616) TCGA-D7-6822-01 3 51673938 51673938 A C RAD54L2 Missense_Mutation p.E718D 0.24 tolerated(0.1) benign(0.14) TCGA-D7-6822-01 3 8775516 8775516 C T CAV3 5'UTR 0.60 TCGA-D7-6822-01 4 115891689 115891689 T G NDST4 Missense_Mutation p.E373A 0.29 deleterious(0.01) benign(0.005) TCGA-D7-6822-01 4 118005450 118005450 T G TRAM1L1 Missense_Mutation p.K367T 0.40 deleterious(0) probably_damaging(0.984) TCGA-D7-6822-01 4 122301756 122301756 C T QRFPR Missense_Mutation p.R16Q 0.25 tolerated(0.43) benign(0.005) TCGA-D7-6822-01 4 128626767 128626767 T A INTU Missense_Mutation p.L530M 0.36 deleterious(0) probably_damaging(0.997) TCGA-D7-6822-01 4 155250772 155250772 C T DCHS2 Missense_Mutation p.R819Q 0.60 tolerated(0.25) benign(0.122) TCGA-D7-6822-01 4 156717663 156717663 G T GUCY1B3 Splice_Site p.X326_splice 0.62 TCGA-D7-6822-01 4 20255569 20255569 T G SLIT2 Missense_Mutation p.L44R 0.31 tolerated(1) benign(0.405) TCGA-D7-6822-01 5 1073883 1073883 C A SLC12A7 Silent p.A702A 0.36 TCGA-D7-6822-01 5 110710585 110710585 T G CAMK4 Missense_Mutation p.L93R 0.57 deleterious(0) probably_damaging(0.998) TCGA-D7-6822-01 5 127873078 127873078 G A FBN2 Silent p.R73R 0.57 TCGA-D7-6822-01 5 140432474 140432474 A T PCDHB1 Missense_Mutation p.K473N 0.56 deleterious(0.04) probably_damaging(0.999) TCGA-D7-6822-01 5 141244931 141244931 G A PCDH1 Missense_Mutation p.A322V 0.67 tolerated(0.71) benign(0.177) TCGA-D7-6822-01 5 158588590 158588590 T G RNF145 Missense_Mutation p.E467A 0.46 deleterious(0) probably_damaging(0.992) TCGA-D7-6822-01 5 161277869 161277869 T C GABRA1 Missense_Mutation p.L18P 0.55 deleterious(0) benign(0.058) TCGA-D7-6822-01 5 161324259 161324259 A G GABRA1 Missense_Mutation p.K401R 0.56 tolerated(0.54) benign(0.132) TCGA-D7-6822-01 5 31313505 31313505 T G CDH6 Missense_Mutation p.L445R 0.32 tolerated(0.23) benign(0.247) TCGA-D7-6822-01 5 43412389 43412389 G C CCL28 Silent p.A10A 0.13 TCGA-D7-6822-01 5 44310564 44310564 A C FGF10 Missense_Mutation p.L132V 0.34 tolerated(0.09) probably_damaging(0.998) TCGA-D7-6822-01 5 54585143 54585144 - C DHX29 Frame_Shift_Ins p.F341Vfs*2 0.16 TCGA-D7-6822-01 6 100369098 100369098 C T MCHR2 Missense_Mutation p.M247I 0.22 tolerated(0.59) benign(0.05) TCGA-D7-6822-01 6 109770864 109770864 T - MICAL1 Frame_Shift_Del p.N477Ifs*10 0.23 TCGA-D7-6822-01 6 117047700 117047700 C T KPNA5 Missense_Mutation p.L390F 0.21 deleterious(0) possibly_damaging(0.785) TCGA-D7-6822-01 6 123653049 123653049 T G TRDN Missense_Mutation p.K482N 0.29 tolerated_low_confidence(0.1) possibly_damaging(0.766) TCGA-D7-6822-01 6 133827363 133827363 T C EYA4 Intron 0.40 TCGA-D7-6822-01 6 144178565 144178565 G A LTV1 Missense_Mutation p.E175K 0.33 tolerated(0.22) benign(0.006) TCGA-D7-6822-01 6 145157547 145157547 C T UTRN Missense_Mutation p.S3312L 0.26 deleterious(0) possibly_damaging(0.589) TCGA-D7-6822-01 6 152639292 152639292 T G SYNE1 Missense_Mutation p.K5499T 0.25 benign(0.046) TCGA-D7-6822-01 6 161966430 161966430 T A PARK2 Intron 0.22 TCGA-D7-6822-01 6 24502805 24502805 G T ALDH5A1 Missense_Mutation p.D137Y 0.31 deleterious(0.01) benign(0.107) TCGA-D7-6822-01 6 29080491 29080491 A C OR2J3 Missense_Mutation p.K275T 0.23 deleterious(0) probably_damaging(0.984) TCGA-D7-6822-01 6 36982750 36982750 G A FGD2 Missense_Mutation p.R322H 0.22 deleterious(0) probably_damaging(0.956) TCGA-D7-6822-01 6 44119697 44119697 C A TMEM63B Silent p.I596I 0.30 TCGA-D7-6822-01 6 55360220 55360220 A T HMGCLL1 Silent p.L294L 0.19 TCGA-D7-6822-01 6 55639011 55639011 A G BMP5 Missense_Mutation p.L288P 0.18 deleterious(0) probably_damaging(0.992) TCGA-D7-6822-01 6 69666638 69666638 A C BAI3 Missense_Mutation p.T488P 0.17 deleterious(0.02) probably_damaging(0.998) TCGA-D7-6822-01 6 72011128 72011128 A C OGFRL1 Missense_Mutation p.K244N 0.22 deleterious(0.02) possibly_damaging(0.708) TCGA-D7-6822-01 6 72957723 72957723 A C RIMS1 Missense_Mutation p.S712R 0.19 deleterious(0) benign(0.029) TCGA-D7-6822-01 6 75818831 75818831 T C COL12A1 Missense_Mutation p.E2668G 0.20 benign(0.16) TCGA-D7-6822-01 6 80717577 80717596 ACTGGTTGAGTTTGTTGCTC - TTK Frame_Shift_Del p.D64Efs*11 0.45 TCGA-D7-6822-01 6 90425395 90425398 CGTG - MDN1 Frame_Shift_Del p.T2279* 0.13 TCGA-D7-6822-01 7 104681366 104681366 T A KMT2E 5'UTR 0.30 TCGA-D7-6822-01 7 113518368 113518368 T C PPP1R3A Missense_Mutation p.T927A 0.25 tolerated(0.46) benign(0.001) TCGA-D7-6822-01 7 120446741 120446741 C A TSPAN12 Missense_Mutation p.K158N 0.30 deleterious(0) probably_damaging(0.913) TCGA-D7-6822-01 7 137170147 137170147 A T DGKI Silent p.S800S 0.54 TCGA-D7-6822-01 7 13950864 13950864 C - ETV1 Frame_Shift_Del p.G291Afs*52 0.27 TCGA-D7-6822-01 7 143510053 143510053 C T RP11-61L23.2 RNA 0.16 TCGA-D7-6822-01 7 18806774 18806774 T G HDAC9 Missense_Mutation p.L737R 0.13 deleterious(0.01) benign(0.011) TCGA-D7-6822-01 7 21516783 21516783 A T SP4 Missense_Mutation p.T589S 0.26 tolerated(0.89) benign(0.003) TCGA-D7-6822-01 7 31617987 31617987 A C CCDC129 Missense_Mutation p.N396T 0.05 deleterious(0.03) benign(0.212) TCGA-D7-6822-01 7 32909492 32909492 G T KBTBD2 Missense_Mutation p.S446Y 0.09 tolerated(0.05) benign(0.248) TCGA-D7-6822-01 7 32909937 32909937 A G KBTBD2 Silent p.L298L 0.15 TCGA-D7-6822-01 7 38505774 38505774 A T AMPH Missense_Mutation p.V222E 0.15 tolerated(0.17) possibly_damaging(0.868) TCGA-D7-6822-01 7 51111178 51111178 C T COBL Silent p.Q436Q 0.28 TCGA-D7-6822-01 7 64863616 64863616 A G ZNF92 Missense_Mutation p.R197G 0.41 tolerated(0.48) benign(0.005) TCGA-D7-6822-01 7 77789342 77789342 T G MAGI2 Missense_Mutation p.T949P 0.32 tolerated(0.1) possibly_damaging(0.716) TCGA-D7-6822-01 7 81335016 81335016 C T HGF Missense_Mutation p.C604Y 0.32 tolerated(0.23) probably_damaging(1) TCGA-D7-6822-01 7 82387933 82387933 G A PCLO Silent p.V5129V 0.33 TCGA-D7-6822-01 7 82582534 82582534 T G PCLO Missense_Mutation p.T2579P 0.36 unknown(0) TCGA-D7-6822-01 7 88963087 88963087 A C ZNF804B Missense_Mutation p.K264T 0.36 tolerated(0.34) benign(0.035) TCGA-D7-6822-01 8 106813376 106813376 T C ZFPM2 Missense_Mutation p.S356P 0.39 tolerated(0.07) probably_damaging(0.997) TCGA-D7-6822-01 8 113243805 113243805 T G CSMD3 Missense_Mutation p.K3599N 0.18 deleterious(0.01) benign(0.368) TCGA-D7-6822-01 8 113563095 113563095 A G CSMD3 Missense_Mutation p.F1457L 0.39 deleterious(0.03) benign(0.261) TCGA-D7-6822-01 8 113662404 113662404 A C CSMD3 Missense_Mutation p.L1060R 0.17 deleterious(0) probably_damaging(0.978) TCGA-D7-6822-01 8 118174111 118174111 T G SLC30A8 Missense_Mutation p.L236R 0.21 deleterious(0.02) probably_damaging(0.988) TCGA-D7-6822-01 8 120886012 120886012 T G DEPTOR 5'UTR 0.14 TCGA-D7-6822-01 8 139715560 139715560 A C COL22A1 Missense_Mutation p.L850V 0.17 possibly_damaging(0.771) TCGA-D7-6822-01 8 2077170 2077170 G A MYOM2 Silent p.Q1250Q 0.22 TCGA-D7-6822-01 8 25702017 25702017 C A EBF2 3'UTR 0.25 TCGA-D7-6822-01 8 2857642 2857642 C T CSMD1 Missense_Mutation p.G2681S 0.25 possibly_damaging(0.85) TCGA-D7-6822-01 8 35606063 35606063 T C UNC5D Silent p.S595S 0.19 TCGA-D7-6822-01 8 38135877 38135877 C G WHSC1L1 Missense_Mutation p.E1272Q 0.16 tolerated(0.1) benign(0.06) TCGA-D7-6822-01 8 39091556 39091556 A G ADAM32 Silent p.P591P 0.20 TCGA-D7-6822-01 8 48647875 48647875 G A SPIDR Missense_Mutation p.E871K 0.04 tolerated(0.05) possibly_damaging(0.521) TCGA-D7-6822-01 8 49831428 49831428 T G SNAI2 Missense_Mutation p.T249P 0.19 deleterious(0) probably_damaging(0.999) TCGA-D7-6822-01 8 52321405 52321405 G A PXDNL Missense_Mutation p.P927S 0.23 tolerated(0.75) benign(0.006) TCGA-D7-6822-01 8 70970953 70970953 G A PRDM14 Silent p.L436L 0.24 TCGA-D7-6822-01 8 72964896 72964896 A C TRPA1 Missense_Mutation p.F583L 0.24 deleterious(0.01) benign(0.014) TCGA-D7-6822-01 8 76456063 76456063 A G HNF4G Missense_Mutation p.T36A 0.24 tolerated(0.9) benign(0.001) TCGA-D7-6822-01 9 101818614 101818614 T A COL15A1 Missense_Mutation p.F1089I 0.37 tolerated(0.21) benign(0.177) TCGA-D7-6822-01 9 106864469 106864469 G C SMC2 Missense_Mutation p.D289H 0.32 deleterious(0) possibly_damaging(0.486) TCGA-D7-6822-01 9 120474967 120474967 T G TLR4 Missense_Mutation p.I187M 0.32 deleterious(0) probably_damaging(1) TCGA-D7-6822-01 9 124535628 124535628 A C DAB2IP Missense_Mutation p.S913R 0.27 tolerated(0.22) benign(0.009) TCGA-D7-6822-01 9 129158013 129158013 G A MVB12B Intron 0.37 TCGA-D7-6822-01 9 129455843 129455843 G A LMX1B Missense_Mutation p.R261H 0.64 deleterious(0) probably_damaging(0.996) TCGA-D7-6822-01 9 135277625 135277625 T C TTF1 Missense_Mutation p.E195G 0.28 deleterious(0.03) benign(0.129) TCGA-D7-6822-01 9 15971891 15971891 A G CCDC171 3'UTR 0.74 TCGA-D7-6822-01 9 34517452 34517452 G A DNAI1 Missense_Mutation p.R663H 0.23 deleterious(0) probably_damaging(0.996) TCGA-D7-6822-01 9 74319525 74319525 G A TMEM2 Silent p.L1060L 0.25 TCGA-D7-6822-01 9 8341911 8341911 T A PTPRD Nonsense_Mutation p.K1577* 0.18 TCGA-D7-6822-01 X 12736165 12736165 C A FRMPD4 Missense_Mutation p.Q1074K 0.69 tolerated_low_confidence(0.15) benign(0.062) TCGA-D7-6822-01 X 140993256 140993256 T C MAGEC1 Silent p.P22P 0.40 TCGA-D7-6822-01 X 144337294 144337294 A T SPANXN1 Missense_Mutation p.K60M 0.45 deleterious(0.01) probably_damaging(0.961) TCGA-D7-6822-01 X 148607451 148607451 T - IDS Intron 0.30 TCGA-D7-6822-01 X 149945911 149945911 A G CD99L2 Intron 0.44 TCGA-D7-6822-01 X 27765043 27765043 T C DCAF8L2 Silent p.L11L 0.70 TCGA-D7-6822-01 X 29935668 29935668 T G IL1RAPL1 Missense_Mutation p.F289C 0.65 tolerated(0.17) probably_damaging(0.998) TCGA-D7-6822-01 X 3002505 3002505 G A ARSF Missense_Mutation p.G210S 0.79 tolerated(0.08) benign(0.283) TCGA-D7-6822-01 X 67937258 67937258 G A STARD8 Missense_Mutation p.E168K 0.41 tolerated(0.51) benign(0.014) TCGA-D7-6822-01 X 72434461 72434461 C T NAP1L2 5'UTR 0.41 TCGA-D7-6822-01 X 74698782 74698782 A C ZDHHC15 Missense_Mutation p.F68V 0.50 deleterious(0.02) probably_damaging(0.968) TCGA-D7-6822-01 X 79698243 79698243 A C FAM46D Missense_Mutation p.S69R 0.39 deleterious(0) probably_damaging(1) TCGA-D7-6822-01 X 83599419 83599419 T G HDX Missense_Mutation p.E500A 0.36 deleterious(0.01) benign(0.125) TCGA-D7-6822-01 X 8434381 8434381 C A VCX3B Missense_Mutation p.P233Q 0.70 deleterious_low_confidence(0) unknown(0) TCGA-D7-6822-01 X 91090643 91090643 T G PCDH11X Missense_Mutation p.L47R 0.27 deleterious(0.04) probably_damaging(1) TCGA-D7-8570-01 10 101590129 101590129 G A ABCC2 Missense_Mutation p.E896K 0.17 tolerated(0.17) benign(0.222) TCGA-D7-8570-01 10 117884945 117884945 A G GFRA1 Missense_Mutation p.V186A 0.26 tolerated(0.56) benign(0.022) TCGA-D7-8570-01 10 122349030 122349030 G A PPAPDC1A 3'UTR 0.13 TCGA-D7-8570-01 10 134598811 134598811 C T NKX6-2 Silent p.S184S 0.17 TCGA-D7-8570-01 10 58120068 58120068 C G ZWINT Missense_Mutation p.V40L 0.18 deleterious(0.01) benign(0.086) TCGA-D7-8570-01 10 71142523 71142523 G A HK1 Missense_Mutation p.V520I 0.15 tolerated(0.05) benign(0.129) TCGA-D7-8570-01 10 71921409 71921409 G C SAR1A Missense_Mutation p.D48E 0.17 tolerated(0.28) benign(0.291) TCGA-D7-8570-01 10 93753597 93753597 T A BTAF1 Missense_Mutation p.N1064K 0.16 tolerated(0.77) benign(0.001) TCGA-D7-8570-01 10 95360237 95360237 C T RBP4 Missense_Mutation p.D90N 0.19 tolerated(0.14) benign(0.008) TCGA-D7-8570-01 10 96702172 96702178 CAGGGGT AAGGGG CYP2C9 Intron 0.10 TCGA-D7-8570-01 11 102220931 102220931 C G BIRC2 Missense_Mutation p.L116V 0.14 tolerated(0.07) benign(0.259) TCGA-D7-8570-01 11 1155765 1155765 C T MUC5AC Silent p.S151S 0.32 TCGA-D7-8570-01 11 118771876 118771876 A G BCL9L Missense_Mutation p.M859T 0.13 benign(0.018) TCGA-D7-8570-01 11 121000456 121000456 A C TECTA Missense_Mutation p.Q826P 0.04 tolerated(0.16) benign(0.433) TCGA-D7-8570-01 11 121495981 121495981 G C SORL1 Missense_Mutation p.G2120A 0.15 tolerated(0.43) benign(0.005) TCGA-D7-8570-01 11 27528282 27528282 T C LIN7C Silent p.E6E 0.05 TCGA-D7-8570-01 11 27720926 27720926 C T BDNF Intron 0.09 TCGA-D7-8570-01 11 48177352 48177352 G C PTPRJ Splice_Site p.X1077_splice 0.11 TCGA-D7-8570-01 11 5068474 5068484 GCACGTGTGGC - OR52J3 Frame_Shift_Del p.T241Sfs*66 0.11 TCGA-D7-8570-01 11 58956751 58956751 G T DTX4 Missense_Mutation p.V372F 0.33 tolerated(0.14) benign(0.021) TCGA-D7-8570-01 11 60531284 60531284 G A MS4A15 Silent p.P26P 0.14 TCGA-D7-8570-01 11 62037723 62037723 T A SCGB2A2 Missense_Mutation p.L12H 0.14 deleterious(0) possibly_damaging(0.869) TCGA-D7-8570-01 11 77409649 77409649 G A RSF1 Silent p.G866G 0.15 TCGA-D7-8570-01 11 8715531 8715531 A C ST5 3'UTR 0.27 TCGA-D7-8570-01 11 88781018 88781018 G C GRM5 Nonsense_Mutation p.S8* 0.10 TCGA-D7-8570-01 11 94923017 94923017 T G SESN3 Silent p.R151R 0.11 TCGA-D7-8570-01 12 11150144 11150144 C T TAS2R20 Missense_Mutation p.V111I 0.13 deleterious(0) benign(0.22) TCGA-D7-8570-01 12 124827739 124827739 C T NCOR2 Missense_Mutation p.R1583Q 0.14 probably_damaging(0.993) TCGA-D7-8570-01 12 133209266 133209266 C G POLE Silent p.A2040A 0.13 TCGA-D7-8570-01 12 14664633 14664633 G C PLBD1 Missense_Mutation p.S286C 0.19 deleterious(0) probably_damaging(1) TCGA-D7-8570-01 12 49421805 49421805 T A KMT2D Missense_Mutation p.E4834D 0.20 unknown(0) TCGA-D7-8570-01 12 53689700 53689700 G C PFDN5 Silent p.L50L 0.19 TCGA-D7-8570-01 12 5603686 5603686 G A NTF3 Silent p.P115P 0.13 TCGA-D7-8570-01 12 58090082 58090082 C T OS9 Missense_Mutation p.R169C 0.11 deleterious(0) probably_damaging(0.998) TCGA-D7-8570-01 12 66638317 66638317 C G IRAK3 Silent p.A313A 0.16 TCGA-D7-8570-01 13 23824841 23824841 G A SGCG Missense_Mutation p.G124S 0.17 tolerated(0.07) probably_damaging(0.973) TCGA-D7-8570-01 13 31891748 31891748 G A B3GALTL Silent p.E370E 0.12 TCGA-D7-8570-01 13 35731227 35731230 GTGT - NBEA Frame_Shift_Del p.Q888Hfs*40 0.13 TCGA-D7-8570-01 13 40251606 40251606 C T COG6 Nonsense_Mutation p.Q144* 0.14 TCGA-D7-8570-01 13 61987362 61987362 G C PCDH20 Missense_Mutation p.I290M 0.21 deleterious(0) probably_damaging(0.988) TCGA-D7-8570-01 14 23652065 23652065 T A SLC7A8 Missense_Mutation p.E20V 0.15 tolerated(0.12) benign(0.007) TCGA-D7-8570-01 14 23848585 23848585 C G CMTM5 Silent p.A150A 0.18 TCGA-D7-8570-01 14 31071327 31071327 G C G2E3 Missense_Mutation p.D334H 0.13 tolerated(0.3) benign(0.332) TCGA-D7-8570-01 14 73739421 73739421 G A PAPLN 3'UTR 0.10 TCGA-D7-8570-01 14 90735757 90735757 G A PSMC1 Missense_Mutation p.G300S 0.15 tolerated(0.19) benign(0.154) TCGA-D7-8570-01 15 20876538 20876538 G T NBEAP1 RNA 0.06 TCGA-D7-8570-01 15 25616254 25616254 C T UBE3A Missense_Mutation p.R359Q 0.21 tolerated(0.56) benign(0.012) TCGA-D7-8570-01 15 40703835 40703835 C G IVD Missense_Mutation p.T214R 0.08 deleterious(0) probably_damaging(1) TCGA-D7-8570-01 15 40751171 40751171 C T BAHD1 Missense_Mutation p.R170W 0.08 deleterious(0) probably_damaging(0.994) TCGA-D7-8570-01 15 44888535 44888535 A C SPG11 Missense_Mutation p.Y1394D 0.18 tolerated(0.65) probably_damaging(0.991) TCGA-D7-8570-01 15 45007747 45007751 GAATT - B2M Frame_Shift_Del p.I66Kfs*22 0.12 TCGA-D7-8570-01 16 1245993 1245993 C T CACNA1H Missense_Mutation p.R205W 0.15 deleterious(0) probably_damaging(0.999) TCGA-D7-8570-01 16 21328460 21328460 C T CRYM-AS1 RNA 0.07 TCGA-D7-8570-01 16 24942523 24942523 C A ARHGAP17 Silent p.R699R 0.19 TCGA-D7-8570-01 16 61687567 61687567 C T CDH8 Missense_Mutation p.R782H 0.17 tolerated(0.11) probably_damaging(0.91) TCGA-D7-8570-01 16 70190507 70190507 A T PDPR Missense_Mutation p.I789F 0.09 deleterious(0) probably_damaging(0.979) TCGA-D7-8570-01 16 7568355 7568355 G A RBFOX1 Silent p.A98A 0.14 TCGA-D7-8570-01 16 81061838 81061838 C - CENPN Frame_Shift_Del p.R292Dfs*3 0.12 TCGA-D7-8570-01 17 11774939 11774939 G A DNAH9 Missense_Mutation p.V3360M 0.15 possibly_damaging(0.819) TCGA-D7-8570-01 17 27614063 27614063 C T NUFIP2 Missense_Mutation p.D317N 0.16 tolerated(0.06) probably_damaging(0.948) TCGA-D7-8570-01 17 31323877 31323888 TTTCACAAGCGG - SPACA3 In_Frame_Del p.T122_F125del 0.20 TCGA-D7-8570-01 17 39023097 39023097 C T KRT12 Silent p.S114S 0.15 TCGA-D7-8570-01 17 39992190 39992190 G T NT5C3B Missense_Mutation p.A11D 0.31 tolerated(0.22) benign(0.004) TCGA-D7-8570-01 17 40935985 40935985 G A WNK4 Silent p.P274P 0.17 TCGA-D7-8570-01 17 42989090 42989090 G A GFAP Missense_Mutation p.R286W 0.07 deleterious(0) probably_damaging(1) TCGA-D7-8570-01 17 43221032 43221032 G A ACBD4 3'UTR 0.18 TCGA-D7-8570-01 17 43320665 43320665 C T FMNL1 Missense_Mutation p.R731C 0.12 deleterious(0) probably_damaging(0.964) TCGA-D7-8570-01 17 4873788 4873788 G A CAMTA2 Missense_Mutation p.P974L 0.21 deleterious(0) probably_damaging(0.999) TCGA-D7-8570-01 17 67212089 67212089 C G ABCA10 Missense_Mutation p.G242A 0.11 tolerated(0.09) possibly_damaging(0.479) TCGA-D7-8570-01 17 76129507 76129507 C G TMC8 Silent p.L184L 0.19 TCGA-D7-8570-01 17 76354545 76354545 G A SOCS3 Missense_Mutation p.P211L 0.14 deleterious(0) probably_damaging(1) TCGA-D7-8570-01 17 7662770 7662770 C T DNAH2 Missense_Mutation p.R827W 0.21 possibly_damaging(0.776) TCGA-D7-8570-01 18 2913136 2913136 G T EMILIN2 Missense_Mutation p.V966L 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-D7-8570-01 18 5415871 5415871 C T EPB41L3 Silent p.A671A 0.12 TCGA-D7-8570-01 19 17644500 17644500 T A FAM129C Silent p.P170P 0.10 TCGA-D7-8570-01 19 36231285 36231285 C T IGFLR1 Missense_Mutation p.R113K 0.30 tolerated(0.42) benign(0.001) TCGA-D7-8570-01 19 41704707 41704707 C T CYP2S1 Missense_Mutation p.R250W 0.26 deleterious(0.02) benign(0.016) TCGA-D7-8570-01 19 47998675 47998675 G A NAPA Intron 0.20 TCGA-D7-8570-01 19 49132886 49132886 C T SPHK2 Silent p.A607A 0.24 TCGA-D7-8570-01 19 49217246 49217246 C A MAMSTR Silent p.P260P 0.06 TCGA-D7-8570-01 19 49858438 49858438 G T TEAD2 Missense_Mutation p.S169Y 0.10 tolerated(0.07) benign(0.35) TCGA-D7-8570-01 19 53741803 53741803 A G ZNF677 Silent p.S59S 0.25 TCGA-D7-8570-01 19 54401213 54401213 C T PRKCG Missense_Mutation p.R314W 0.09 deleterious(0) possibly_damaging(0.884) TCGA-D7-8570-01 19 54621676 54621676 G A PRPF31 Silent p.E6E 0.10 TCGA-D7-8570-01 19 54657452 54657452 G T CNOT3 Missense_Mutation p.G680C 0.19 deleterious(0) probably_damaging(0.991) TCGA-D7-8570-01 19 55329954 55329954 G A KIR3DL1 Silent p.V85V 0.16 TCGA-D7-8570-01 19 57746683 57746683 C A AURKC Nonsense_Mutation p.Y276* 0.08 TCGA-D7-8570-01 19 58601477 58601477 C T ZSCAN18 Missense_Mutation p.R109Q 0.24 deleterious(0) probably_damaging(1) TCGA-D7-8570-01 19 9087354 9087354 A G MUC16 Silent p.A1487A 0.18 TCGA-D7-8570-01 1 143767879 143767879 G A PPIAL4G 5'UTR 0.22 TCGA-D7-8570-01 1 155408474 155408474 G A ASH1L Silent p.D1824D 0.08 TCGA-D7-8570-01 1 158623116 158623116 G A SPTA1 Nonsense_Mutation p.R1046* 0.15 TCGA-D7-8570-01 1 161042415 161042415 A T PVRL4 3'UTR 0.38 TCGA-D7-8570-01 1 16359716 16359716 C T CLCNKA Missense_Mutation p.R661W 0.26 tolerated(0.17) benign(0.023) TCGA-D7-8570-01 1 165513859 165513859 G C LRRC52 Missense_Mutation p.S109T 0.08 deleterious(0) probably_damaging(1) TCGA-D7-8570-01 1 205132996 205132996 C T DSTYK Missense_Mutation p.R471Q 0.25 tolerated(0.2) benign(0.006) TCGA-D7-8570-01 1 209933511 209933511 C T TRAF3IP3 Missense_Mutation p.R43C 0.33 deleterious(0) probably_damaging(0.975) TCGA-D7-8570-01 1 214818018 214818018 T A CENPF Missense_Mutation p.L1702H 0.12 probably_damaging(0.977) TCGA-D7-8570-01 1 223285526 223285526 G C TLR5 Missense_Mutation p.A283G 0.09 deleterious(0.02) benign(0.067) TCGA-D7-8570-01 1 243303453 243303453 A C CEP170 Intron 0.16 TCGA-D7-8570-01 1 248085005 248085005 C A OR2T8 Missense_Mutation p.T229K 0.14 tolerated(0.08) benign(0.005) TCGA-D7-8570-01 20 1161386 1161386 A C TMEM74B 3'UTR 0.11 TCGA-D7-8570-01 20 20350144 20350144 C T INSM1 Silent p.Y411Y 0.30 TCGA-D7-8570-01 20 22564961 22564961 C G FOXA2 5'UTR 0.40 TCGA-D7-8570-01 20 23967200 23967200 C T GGTLC1 Missense_Mutation p.D17N 0.09 tolerated(0.86) benign(0.008) TCGA-D7-8570-01 20 34775685 34775685 G C EPB41L1 Missense_Mutation p.K291N 0.18 deleterious(0) probably_damaging(0.977) TCGA-D7-8570-01 20 44574499 44574499 A T PCIF1 Missense_Mutation p.S440C 0.04 deleterious(0) benign(0.412) TCGA-D7-8570-01 20 61287965 61287965 C T SLCO4A1 Silent p.D53D 0.24 TCGA-D7-8570-01 20 61542173 61542173 G A DIDO1 Silent p.Y264Y 0.12 TCGA-D7-8570-01 20 896872 896872 A G ANGPT4 5'UTR 0.19 TCGA-D7-8570-01 22 19967604 19967604 G A ARVCF Missense_Mutation p.P353L 0.30 deleterious(0) probably_damaging(0.999) TCGA-D7-8570-01 22 43933323 43933323 G T EFCAB6 Missense_Mutation p.L1328I 0.23 tolerated(0.36) benign(0.02) TCGA-D7-8570-01 2 149240903 149240903 A T MBD5 Missense_Mutation p.N915Y 0.15 deleterious(0) unknown(0) TCGA-D7-8570-01 2 166848344 166848344 T G SCN1A Missense_Mutation p.K1814T 0.13 deleterious(0) probably_damaging(1) TCGA-D7-8570-01 2 177017437 177017437 C G HOXD4 Missense_Mutation p.L179V 0.09 deleterious(0) probably_damaging(0.999) TCGA-D7-8570-01 2 202151266 202151266 G C CASP8 Missense_Mutation p.M522I 0.09 deleterious(0) possibly_damaging(0.795) TCGA-D7-8570-01 2 238249128 238249128 G A COL6A3 Missense_Mutation p.R2811C 0.11 unknown(0) TCGA-D7-8570-01 2 29383251 29383251 A T CLIP4 Missense_Mutation p.E484D 0.14 tolerated(0.24) benign(0.004) TCGA-D7-8570-01 2 95713846 95713846 G T MAL Missense_Mutation p.G79V 0.14 deleterious(0.02) possibly_damaging(0.905) TCGA-D7-8570-01 2 9580739 9580739 C T CPSF3 Missense_Mutation p.R294C 0.14 deleterious(0) probably_damaging(0.995) TCGA-D7-8570-01 2 95847608 95847608 C T ZNF2 Silent p.N345N 0.10 TCGA-D7-8570-01 3 134276999 134276999 C G CEP63 Missense_Mutation p.L495V 0.12 tolerated(0.14) benign(0.06) TCGA-D7-8570-01 3 52725622 52725622 T G GNL3 Silent p.V282V 0.14 TCGA-D7-8570-01 4 113435806 113435806 G A NEUROG2 3'UTR 0.14 TCGA-D7-8570-01 4 123161241 123161241 G A KIAA1109 Silent p.A1468A 0.09 TCGA-D7-8570-01 4 134072398 134072398 G T PCDH10 Missense_Mutation p.S368I 0.18 tolerated(0.18) probably_damaging(0.999) TCGA-D7-8570-01 4 143007328 143007328 T A INPP4B Missense_Mutation p.K819M 0.15 deleterious(0) probably_damaging(0.996) TCGA-D7-8570-01 4 155533323 155533323 C T FGG Missense_Mutation p.A52T 0.16 tolerated(0.11) possibly_damaging(0.854) TCGA-D7-8570-01 4 53579527 53579527 G C SNORA26 RNA 0.15 TCGA-D7-8570-01 5 140237313 140237313 C T PCDHA10 Silent p.N560N 0.36 TCGA-D7-8570-01 5 140474846 140474846 C T PCDHB2 Missense_Mutation p.R158C 0.36 tolerated_low_confidence(0.18) benign(0.035) TCGA-D7-8570-01 5 26988325 26988325 C A CDH9 Missense_Mutation p.G39V 0.39 deleterious(0.04) benign(0.049) TCGA-D7-8570-01 5 37333694 37333694 C T NUP155 Silent p.A463A 0.07 TCGA-D7-8570-01 6 154439830 154439830 G T OPRM1 Nonsense_Mutation p.E486* 0.20 TCGA-D7-8570-01 6 27215755 27215755 C T PRSS16 Silent p.A55A 0.17 TCGA-D7-8570-01 6 29054811 29054811 C T OR2B3 Missense_Mutation p.C72Y 0.13 deleterious(0) probably_damaging(0.968) TCGA-D7-8570-01 6 31760235 31760246 TTTCTTTGCCTC - VARS In_Frame_Del p.E237_K240del 0.16 TCGA-D7-8570-01 6 40359728 40359728 C T LRFN2 Missense_Mutation p.R775Q 0.13 tolerated(0.06) benign(0.041) TCGA-D7-8570-01 6 42185576 42185576 C T MRPS10 Silent p.R4R 0.18 TCGA-D7-8570-01 6 66204885 66204885 C A EYS Missense_Mutation p.W140L 0.13 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-D7-8570-01 6 72984077 72984077 A T RIMS1 Missense_Mutation p.R1142W 0.19 deleterious(0) probably_damaging(0.994) TCGA-D7-8570-01 7 128487899 128487899 G C FLNC Silent p.V1479V 0.16 TCGA-D7-8570-01 7 150417616 150417616 G A GIMAP1 Missense_Mutation p.R175H 0.20 deleterious(0.01) probably_damaging(0.99) TCGA-D7-8570-01 7 23221774 23221774 G C NUPL2 Missense_Mutation p.G24R 0.12 tolerated(1) benign(0.198) TCGA-D7-8570-01 7 24905023 24905023 C T OSBPL3 Missense_Mutation p.G204D 0.23 deleterious(0.03) benign(0.06) TCGA-D7-8570-01 7 41740049 41740049 G T INHBA 5'UTR 0.18 TCGA-D7-8570-01 7 45145579 45145579 C T TBRG4 Intron 0.09 TCGA-D7-8570-01 7 53103907 53103907 G A POM121L12 Silent p.A181A 0.13 TCGA-D7-8570-01 7 72399003 72399003 A T POM121 Missense_Mutation p.K103M 0.11 deleterious(0) probably_damaging(0.983) TCGA-D7-8570-01 7 90419944 90419944 C T CDK14 Missense_Mutation p.T156I 0.07 tolerated(0.12) possibly_damaging(0.693) TCGA-D7-8570-01 7 90896065 90896065 G A FZD1 Missense_Mutation p.G624S 0.18 tolerated(0.32) benign(0.416) TCGA-D7-8570-01 8 106814853 106814853 A G ZFPM2 Missense_Mutation p.K848R 0.21 tolerated(0.31) benign(0.235) TCGA-D7-8570-01 8 145059422 145059422 G C PARP10 Missense_Mutation p.L250V 0.28 deleterious(0) possibly_damaging(0.794) TCGA-D7-8570-01 8 53073962 53073962 C T ST18 Missense_Mutation p.G523R 0.19 deleterious(0.03) possibly_damaging(0.814) TCGA-D7-8570-01 8 69434170 69434170 G A C8orf34 Nonsense_Mutation p.W301* 0.12 TCGA-D7-8570-01 8 81605248 81605248 G A ZNF704 Missense_Mutation p.R106W 0.29 deleterious(0.01) probably_damaging(0.944) TCGA-D7-8570-01 9 127643517 127643517 G C GOLGA1 Missense_Mutation p.A719G 0.14 deleterious(0) probably_damaging(0.943) TCGA-D7-8570-01 9 127734104 127734104 G C SCAI Missense_Mutation p.S496R 0.15 tolerated(0.06) possibly_damaging(0.743) TCGA-D7-8570-01 9 17484457 17484457 A G CNTLN Missense_Mutation p.I1340M 0.15 tolerated(0.2) possibly_damaging(0.526) TCGA-D7-8570-01 X 101858779 101858779 T G ARMCX5 3'UTR 0.19 TCGA-D7-8570-01 X 73063365 73063365 A T XIST RNA 0.26 TCGA-D7-8572-01 10 133781989 133781989 G A BNIP3 3'UTR 0.19 TCGA-D7-8572-01 10 134219456 134219456 C T PWWP2B Silent p.D484D 0.05 TCGA-D7-8572-01 10 25314060 25314060 G A THNSL1 Silent p.G636G 0.09 TCGA-D7-8572-01 10 35500714 35500714 C T CREM Missense_Mutation p.P296S 0.05 tolerated(0.46) benign(0.012) TCGA-D7-8572-01 10 55581798 55581798 T G PCDH15 Silent p.V1898V 0.15 TCGA-D7-8572-01 10 55581808 55581808 T C PCDH15 Missense_Mutation p.E1895G 0.13 deleterious_low_confidence(0) unknown(0) TCGA-D7-8572-01 10 61552441 61552441 C T CCDC6 3'UTR 0.10 TCGA-D7-8572-01 10 61894095 61894095 C A ANK3 Missense_Mutation p.L925F 0.21 probably_damaging(0.92) TCGA-D7-8572-01 10 70450738 70450738 G C TET1 Missense_Mutation p.A1860P 0.28 tolerated(0.14) benign(0.014) TCGA-D7-8572-01 10 85912147 85912147 T C GHITM 3'UTR 0.19 TCGA-D7-8572-01 10 96354483 96354483 G A HELLS Missense_Mutation p.R707K 0.47 deleterious(0) probably_damaging(1) TCGA-D7-8572-01 10 99371384 99371384 C T HOGA1 Missense_Mutation p.R318C 0.19 deleterious(0) possibly_damaging(0.77) TCGA-D7-8572-01 11 105850358 105850358 G C GRIA4 Silent p.V867V 0.23 TCGA-D7-8572-01 11 107965145 107965145 A G CUL5 Missense_Mutation p.N491D 0.21 deleterious(0.02) benign(0.295) TCGA-D7-8572-01 11 116619288 116619288 G C BUD13 Silent p.S590S 0.26 TCGA-D7-8572-01 11 120352120 120352120 C A ARHGEF12 Silent p.S1463S 0.28 TCGA-D7-8572-01 11 124266663 124266663 G A OR8B3 Silent p.N195N 0.21 TCGA-D7-8572-01 11 134238567 134238567 G A GLB1L2 Missense_Mutation p.D307N 0.16 tolerated(0.29) benign(0.008) TCGA-D7-8572-01 11 33375082 33375082 C A HIPK3 Missense_Mutation p.P1206T 0.09 deleterious(0) probably_damaging(0.999) TCGA-D7-8572-01 11 46750965 46750965 G C F2 Missense_Mutation p.G503A 0.21 deleterious(0) probably_damaging(1) TCGA-D7-8572-01 11 46912013 46912013 G A LRP4 Missense_Mutation p.P577L 0.17 deleterious(0) probably_damaging(0.998) TCGA-D7-8572-01 11 57080878 57080878 G A TNKS1BP1 Silent p.F428F 0.16 TCGA-D7-8572-01 11 6816802 6816802 G T OR6A2 Silent p.I46I 0.22 TCGA-D7-8572-01 11 68679026 68679026 G C IGHMBP2 Silent p.T222T 0.14 TCGA-D7-8572-01 11 76255390 76255390 C T C11orf30 Missense_Mutation p.P933S 0.27 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-D7-8572-01 11 92087849 92087849 C A FAT3 Missense_Mutation p.D857E 0.28 probably_damaging(0.999) TCGA-D7-8572-01 11 99690317 99690317 C A CNTN5 Missense_Mutation p.A33D 0.08 deleterious_low_confidence(0.01) possibly_damaging(0.897) TCGA-D7-8572-01 12 109972568 109972568 C T UBE3B Missense_Mutation p.T1063M 0.10 deleterious(0) probably_damaging(0.998) TCGA-D7-8572-01 12 110318161 110318161 G A GLTP Missense_Mutation p.H7Y 0.20 deleterious(0.03) benign(0.005) TCGA-D7-8572-01 12 110350867 110350867 T A TCHP Missense_Mutation p.L375Q 0.17 deleterious(0) probably_damaging(0.999) TCGA-D7-8572-01 12 120635143 120635143 G C RPLP0 Silent p.T258T 0.22 TCGA-D7-8572-01 12 12588569 12588569 G C LOH12CR1 Missense_Mutation p.L70F 0.12 deleterious(0.02) benign(0.395) TCGA-D7-8572-01 12 13061936 13061936 C T GPRC5A Silent p.A251A 0.15 TCGA-D7-8572-01 12 20709624 20709624 C G PDE3A Missense_Mutation p.R331G 0.12 deleterious(0.01) probably_damaging(0.946) TCGA-D7-8572-01 12 25263069 25263069 C T CASC1 Missense_Mutation p.V629I 0.22 tolerated(0.17) benign(0.069) TCGA-D7-8572-01 12 39047804 39047804 T C CPNE8 Silent p.K525K 0.13 TCGA-D7-8572-01 12 51470289 51470289 C T CSRNP2 Missense_Mutation p.G19D 0.14 deleterious(0.02) probably_damaging(0.935) TCGA-D7-8572-01 12 5154411 5154411 C A KCNA5 Missense_Mutation p.F366L 0.22 tolerated(0.6) possibly_damaging(0.714) TCGA-D7-8572-01 12 53009973 53009973 T A KRT73 Missense_Mutation p.E213D 0.22 tolerated(1) benign(0.001) TCGA-D7-8572-01 12 56525997 56525997 C T ESYT1 Missense_Mutation p.L289F 0.19 tolerated(0.17) benign(0.18) TCGA-D7-8572-01 12 56664067 56664067 G A COQ10A Missense_Mutation p.R237H 0.17 deleterious(0) benign(0.348) TCGA-D7-8572-01 12 78513117 78513117 T C NAV3 Silent p.D1047D 0.18 TCGA-D7-8572-01 13 101717887 101717887 C T NALCN Silent p.K1491K 0.25 TCGA-D7-8572-01 13 26542759 26542759 C A ATP8A2 Missense_Mutation p.L1107M 0.16 tolerated(0.5) benign(0.144) TCGA-D7-8572-01 13 67800353 67800353 T C PCDH9 Silent p.K740K 0.15 TCGA-D7-8572-01 13 76381790 76381790 C T LMO7 Silent p.D224D 0.19 TCGA-D7-8572-01 13 86370408 86370408 A C SLITRK6 Missense_Mutation p.L79R 0.17 deleterious(0) probably_damaging(0.982) TCGA-D7-8572-01 13 93518574 93518574 T G GPC5 Missense_Mutation p.I534S 0.16 deleterious(0.03) benign(0.063) TCGA-D7-8572-01 14 21862288 21862288 C T CHD8 Missense_Mutation p.R1889H 0.23 deleterious(0) probably_damaging(0.991) TCGA-D7-8572-01 14 32034253 32034253 C T NUBPL Missense_Mutation p.S97L 0.24 tolerated(0.5) benign(0.024) TCGA-D7-8572-01 14 35483028 35483028 C T SRP54 Missense_Mutation p.P269L 0.16 deleterious(0) probably_damaging(0.981) TCGA-D7-8572-01 14 65251009 65251009 C T SPTB Missense_Mutation p.A1320T 0.24 deleterious(0.01) probably_damaging(0.969) TCGA-D7-8572-01 15 28260028 28260028 G A OCA2 Missense_Mutation p.A313V 0.20 tolerated(0.66) benign(0.001) TCGA-D7-8572-01 15 30019161 30019161 G T TJP1 Missense_Mutation p.A712E 0.17 deleterious(0) probably_damaging(0.98) TCGA-D7-8572-01 15 39874701 39874701 G A THBS1 Silent p.A125A 0.09 TCGA-D7-8572-01 15 48829849 48829849 C T FBN1 Missense_Mutation p.R232H 0.16 probably_damaging(0.999) TCGA-D7-8572-01 15 50570977 50570977 C G GABPB1 Missense_Mutation p.R347T 0.07 deleterious(0) possibly_damaging(0.549) TCGA-D7-8572-01 15 54307303 54307303 G T UNC13C Missense_Mutation p.V735F 0.23 tolerated_low_confidence(0.1) benign(0.044) TCGA-D7-8572-01 15 63984726 63984726 C A HERC1 Missense_Mutation p.G1905V 0.30 possibly_damaging(0.844) TCGA-D7-8572-01 15 75901916 75901916 C T SNUPN Missense_Mutation p.R162Q 0.06 tolerated(0.53) benign(0) TCGA-D7-8572-01 16 15719275 15719275 G C KIAA0430 Missense_Mutation p.A636G 0.17 tolerated(0.32) benign(0.138) TCGA-D7-8572-01 16 21108730 21108730 G A DNAH3 Nonsense_Mutation p.Q871* 0.20 TCGA-D7-8572-01 16 2482985 2482985 G C CCNF Silent p.L65L 0.18 TCGA-D7-8572-01 16 2647782 2647782 C T PDPK1 3'UTR 0.20 TCGA-D7-8572-01 16 2814071 2814071 C G SRRM2 Missense_Mutation p.P1181R 0.05 unknown(0) TCGA-D7-8572-01 16 68847282 68847282 G C CDH1 Missense_Mutation p.D402H 0.07 deleterious(0) probably_damaging(1) TCGA-D7-8572-01 16 74524978 74524978 C T GLG1 Missense_Mutation p.R457Q 0.22 tolerated(0.38) benign(0.216) TCGA-D7-8572-01 16 8948932 8948932 C T CARHSP1 3'UTR 0.33 TCGA-D7-8572-01 17 14110524 14110524 C T COX10 Silent p.P442P 0.48 TCGA-D7-8572-01 17 17119728 17119728 C T FLCN Silent p.P422P 0.12 TCGA-D7-8572-01 17 36865461 36865461 C A MLLT6 Missense_Mutation p.S130R 0.17 deleterious(0.01) unknown(0) TCGA-D7-8572-01 17 37809760 37809760 C T STARD3 5'UTR 0.27 TCGA-D7-8572-01 17 3920947 3920947 G A ZZEF1 Silent p.S2573S 0.20 TCGA-D7-8572-01 17 39240780 39240780 A T KRTAP4-7 Missense_Mutation p.T108S 0.35 tolerated(0.83) unknown(0) TCGA-D7-8572-01 17 40476813 40476813 C T STAT3 Missense_Mutation p.E506K 0.07 tolerated(0.08) possibly_damaging(0.646) TCGA-D7-8572-01 17 40557205 40557205 C T PTRF Missense_Mutation p.G225S 0.18 tolerated(1) probably_damaging(0.994) TCGA-D7-8572-01 17 4442216 4442216 C T SPNS2 3'UTR 0.18 TCGA-D7-8572-01 17 76563093 76563093 G C DNAH17 Missense_Mutation p.D480E 0.20 benign(0.089) TCGA-D7-8572-01 17 8012632 8012632 G A ALOXE3 Silent p.I606I 0.28 TCGA-D7-8572-01 18 21751427 21751427 C T OSBPL1A Missense_Mutation p.C746Y 0.06 tolerated(0.05) probably_damaging(0.967) TCGA-D7-8572-01 18 28651610 28651610 C A DSC2 Missense_Mutation p.A696S 0.22 deleterious(0.03) probably_damaging(0.999) TCGA-D7-8572-01 18 32822695 32822695 G A ZNF397 Silent p.E87E 0.30 TCGA-D7-8572-01 18 50734058 50734058 G T DCC Missense_Mutation p.V578F 0.15 deleterious(0) probably_damaging(0.995) TCGA-D7-8572-01 18 51800426 51800426 G T POLI Silent p.L124L 0.33 TCGA-D7-8572-01 19 11224398 11224398 G A LDLR Missense_Mutation p.G516S 0.23 tolerated(0.09) benign(0.251) TCGA-D7-8572-01 19 21365482 21365482 T A ZNF431 Missense_Mutation p.F126I 0.24 deleterious(0) benign(0.443) TCGA-D7-8572-01 19 34935939 34935939 A C UBA2 Silent p.A228A 0.23 TCGA-D7-8572-01 19 37642476 37642476 C A ZNF585A 3'UTR 0.22 TCGA-D7-8572-01 19 38986957 38986957 C T RYR1 Silent p.G2217G 0.07 TCGA-D7-8572-01 19 46998642 46998642 C T PNMAL2 Silent p.P27P 0.08 TCGA-D7-8572-01 19 50156700 50156700 A C SCAF1 Silent p.R1018R 0.31 TCGA-D7-8572-01 19 53302027 53302027 A G ZNF28 3'UTR 0.19 TCGA-D7-8572-01 19 53612111 53612111 G T ZNF415 Missense_Mutation p.T396N 0.21 tolerated(0.56) benign(0.029) TCGA-D7-8572-01 19 53994018 53994018 C G ZNF813 Missense_Mutation p.Q178E 0.17 tolerated(0.07) benign(0.049) TCGA-D7-8572-01 19 5831739 5831739 G A FUT6 Silent p.Y280Y 0.20 TCGA-D7-8572-01 19 59073782 59073782 C T MZF1 Missense_Mutation p.G621D 0.30 deleterious(0.01) possibly_damaging(0.893) TCGA-D7-8572-01 19 7704638 7704638 G A STXBP2 Missense_Mutation p.R64Q 0.25 tolerated(0.16) possibly_damaging(0.816) TCGA-D7-8572-01 19 9297113 9297113 C G OR7D2 Nonsense_Mutation p.S219* 0.23 TCGA-D7-8572-01 1 108145689 108145689 T C VAV3 Silent p.G704G 0.20 TCGA-D7-8572-01 1 112525240 112525240 G A KCND3 Missense_Mutation p.R37W 0.22 deleterious(0) benign(0.182) TCGA-D7-8572-01 1 114640394 114640394 G A SYT6 Silent p.I405I 0.18 TCGA-D7-8572-01 1 118538991 118538991 A C SPAG17 Splice_Site p.X1685_splice 0.23 TCGA-D7-8572-01 1 145273434 145273434 C T NOTCH2NL Silent p.V96V 0.04 TCGA-D7-8572-01 1 152275264 152275264 T C FLG Missense_Mutation p.N4033S 0.19 unknown(0) TCGA-D7-8572-01 1 158725554 158725554 T C OR6K6 Missense_Mutation p.Y317H 0.05 deleterious(0) probably_damaging(0.998) TCGA-D7-8572-01 1 159410409 159410409 C G OR10J1 Silent p.T287T 0.18 TCGA-D7-8572-01 1 169200055 169200055 G A NME7 Silent p.D297D 0.17 TCGA-D7-8572-01 1 170015873 170015873 C T KIFAP3 Missense_Mutation p.R100H 0.16 deleterious(0) possibly_damaging(0.775) TCGA-D7-8572-01 1 216692635 216692635 T A ESRRG Missense_Mutation p.I343L 0.07 tolerated(0.32) benign(0.055) TCGA-D7-8572-01 1 235403717 235403717 T A ARID4B Missense_Mutation p.R166W 0.17 deleterious(0) probably_damaging(0.997) TCGA-D7-8572-01 1 241912907 241912907 G A WDR64 Silent p.G541G 0.15 TCGA-D7-8572-01 1 33060694 33060694 C A ZBTB8A Missense_Mutation p.T288K 0.28 benign(0.227) TCGA-D7-8572-01 1 43738884 43738884 G A TMEM125 Missense_Mutation p.G164D 0.11 deleterious(0.02) probably_damaging(1) TCGA-D7-8572-01 1 46073520 46073520 G A NASP Missense_Mutation p.E313K 0.17 deleterious_low_confidence(0.05) benign(0.027) TCGA-D7-8572-01 1 79093939 79093939 G T IFI44L Silent p.V113V 0.09 TCGA-D7-8572-01 1 92979379 92979379 C T EVI5 Missense_Mutation p.G756D 0.08 tolerated_low_confidence(0.16) benign(0.069) TCGA-D7-8572-01 20 25187932 25187932 G A ENTPD6 Missense_Mutation p.G92E 0.14 tolerated(0.18) benign(0.025) TCGA-D7-8572-01 20 30605902 30605902 C A CCM2L Missense_Mutation p.H135N 0.27 deleterious(0) probably_damaging(0.999) TCGA-D7-8572-01 20 34063452 34063452 T G CEP250 Missense_Mutation p.V566G 0.17 probably_damaging(0.945) TCGA-D7-8572-01 20 43851491 43851491 A G SEMG2 Missense_Mutation p.I406M 0.10 tolerated(0.56) possibly_damaging(0.703) TCGA-D7-8572-01 20 43851686 43851686 A G SEMG2 Silent p.S471S 0.05 TCGA-D7-8572-01 20 61990948 61990948 G T CHRNA4 Missense_Mutation p.D60E 0.34 tolerated(0.06) probably_damaging(0.999) TCGA-D7-8572-01 21 31654953 31654953 C A KRTAP24-1 Missense_Mutation p.A100S 0.25 tolerated(0.28) benign(0.004) TCGA-D7-8572-01 21 31709591 31709591 T G KRTAP27-1 Missense_Mutation p.Q132H 0.18 deleterious(0.04) benign(0.09) TCGA-D7-8572-01 21 32624274 32624274 C T TIAM1 Missense_Mutation p.E399K 0.15 deleterious(0.02) possibly_damaging(0.509) TCGA-D7-8572-01 21 38128941 38128941 G T HLCS Silent p.I637I 0.17 TCGA-D7-8572-01 21 40590130 40590130 A T BRWD1 Missense_Mutation p.Y1203N 0.08 deleterious(0) probably_damaging(0.999) TCGA-D7-8572-01 21 44514835 44514835 G A U2AF1 Nonsense_Mutation p.Q138* 0.22 TCGA-D7-8572-01 22 21385491 21385491 A C SLC7A4 Missense_Mutation p.L204R 0.11 deleterious(0.02) possibly_damaging(0.56) TCGA-D7-8572-01 22 24313812 24313812 C T DDT Silent p.R95R 0.17 TCGA-D7-8572-01 22 38111817 38111817 C G TRIOBP Missense_Mutation p.D168E 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.595) TCGA-D7-8572-01 22 40365500 40365500 G A GRAP2 Missense_Mutation p.R259Q 0.27 deleterious(0.01) benign(0.231) TCGA-D7-8572-01 2 103335079 103335079 C T MFSD9 Missense_Mutation p.G409S 0.25 deleterious(0) probably_damaging(1) TCGA-D7-8572-01 2 113514603 113514603 C T CKAP2L Silent p.K115K 0.20 TCGA-D7-8572-01 2 166011006 166011006 G T SCN3A Missense_Mutation p.Q446K 0.13 tolerated(0.13) possibly_damaging(0.828) TCGA-D7-8572-01 2 169018346 169018346 C A STK39 Missense_Mutation p.L193F 0.11 deleterious(0) benign(0.285) TCGA-D7-8572-01 2 178362447 178362447 T - AGPS Frame_Shift_Del p.F440Lfs*8 0.10 TCGA-D7-8572-01 2 20166586 20166586 T A WDR35 Missense_Mutation p.N365Y 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-D7-8572-01 2 202003708 202003708 G C CFLAR Intron 0.17 TCGA-D7-8572-01 2 20507793 20507793 T G PUM2 Missense_Mutation p.T277P 0.18 deleterious_low_confidence(0) probably_damaging(0.955) TCGA-D7-8572-01 2 233350955 233350955 G A ECEL1 Missense_Mutation p.R137C 0.21 deleterious(0.02) probably_damaging(0.916) TCGA-D7-8572-01 2 242794972 242794972 C T PDCD1 Silent p.L79L 0.18 TCGA-D7-8572-01 2 85924685 85924685 C T GNLY Silent p.R104R 0.06 TCGA-D7-8572-01 2 89246993 89246993 C T IGKV1-5 Silent p.Q59Q 0.24 TCGA-D7-8572-01 3 160148502 160148502 G A SMC4 Missense_Mutation p.E971K 0.16 tolerated(0.23) benign(0.038) TCGA-D7-8572-01 3 160150896 160150896 T G SMC4 Missense_Mutation p.F1205V 0.18 deleterious(0) probably_damaging(1) TCGA-D7-8572-01 3 182733324 182733324 C T MCCC1 Missense_Mutation p.V694I 0.20 tolerated(0.57) benign(0.022) TCGA-D7-8572-01 3 184801261 184801261 T G C3orf70 Missense_Mutation p.Q96P 0.17 deleterious_low_confidence(0.04) benign(0.126) TCGA-D7-8572-01 3 187447510 187447510 C T BCL6 Missense_Mutation p.R228Q 0.23 tolerated(0.62) benign(0.288) TCGA-D7-8572-01 3 3192625 3192625 G A CRBN Missense_Mutation p.T418M 0.20 deleterious(0.01) possibly_damaging(0.835) TCGA-D7-8572-01 3 33194911 33194911 C T SUSD5 Missense_Mutation p.V405I 0.22 tolerated(0.56) benign(0.003) TCGA-D7-8572-01 3 37114295 37114295 C G LRRFIP2 Missense_Mutation p.D484H 0.11 deleterious(0) probably_damaging(0.999) TCGA-D7-8572-01 3 48677857 48677857 C A CELSR3 Missense_Mutation p.G3054V 0.06 deleterious_low_confidence(0) probably_damaging(0.948) TCGA-D7-8572-01 3 48683606 48683606 C T CELSR3 Silent p.E2460E 0.26 TCGA-D7-8572-01 3 52521725 52521725 C T NISCH Silent p.F739F 0.23 TCGA-D7-8572-01 3 52977610 52977610 C A SFMBT1 Splice_Site p.X42_splice 0.04 TCGA-D7-8572-01 3 93768322 93768322 A T ARL13B Missense_Mutation p.D366V 0.27 deleterious_low_confidence(0) possibly_damaging(0.703) TCGA-D7-8572-01 3 97185297 97185297 T A EPHA6 Intron 0.20 TCGA-D7-8572-01 3 9934908 9934908 C T JAGN1 Silent p.G133G 0.13 TCGA-D7-8572-01 4 126369708 126369708 T A FAT4 Missense_Mutation p.F2513I 0.06 probably_damaging(0.999) TCGA-D7-8572-01 4 55133725 55133725 G T PDGFRA Missense_Mutation p.G313V 0.11 deleterious(0) possibly_damaging(0.881) TCGA-D7-8572-01 4 56277800 56277800 C T TMEM165 Missense_Mutation p.A76V 0.17 tolerated(0.24) benign(0.008) TCGA-D7-8572-01 4 77253601 77253605 ATCTC - CCDC158 Frame_Shift_Del p.S952Hfs*4 0.09 TCGA-D7-8572-01 4 89388332 89388332 C T HERC5 Missense_Mutation p.S345L 0.23 tolerated(0.34) benign(0.004) TCGA-D7-8572-01 4 90856716 90856716 G C MMRN1 Missense_Mutation p.D629H 0.16 deleterious(0) probably_damaging(0.961) TCGA-D7-8572-01 4 96762399 96762399 C A PDHA2 Silent p.I366I 0.22 TCGA-D7-8572-01 5 137271538 137271538 A T PKD2L2 Missense_Mutation p.K575M 0.19 deleterious(0.01) probably_damaging(0.916) TCGA-D7-8572-01 5 140167716 140167716 C A PCDHA1 Missense_Mutation p.A614E 0.20 tolerated_low_confidence(0.19) benign(0.082) TCGA-D7-8572-01 5 141053171 141053171 C A ARAP3 Splice_Site p.X301_splice 0.16 TCGA-D7-8572-01 5 175919208 175919208 T G FAF2 Missense_Mutation p.F120V 0.23 tolerated(0.08) benign(0.253) TCGA-D7-8572-01 5 23521209 23521209 T A PRDM9 Missense_Mutation p.S143R 0.14 tolerated_low_confidence(0.09) benign(0.037) TCGA-D7-8572-01 5 40764627 40764627 C T PRKAA1 Missense_Mutation p.R490H 0.18 deleterious(0) possibly_damaging(0.897) TCGA-D7-8572-01 5 67589663 67589663 G A PIK3R1 Splice_Site p.X475_splice 0.18 TCGA-D7-8572-01 5 68692242 68692242 G A RAD17 Missense_Mutation p.E492K 0.11 tolerated(0.3) benign(0.012) TCGA-D7-8572-01 5 80655815 80655815 C T ACOT12 Missense_Mutation p.V135M 0.17 tolerated(0.37) benign(0.064) TCGA-D7-8572-01 6 101094585 101094585 G A ASCC3 Missense_Mutation p.P1180L 0.15 deleterious(0.01) probably_damaging(1) TCGA-D7-8572-01 6 108234618 108234618 C T SEC63 Missense_Mutation p.E156K 0.21 deleterious(0.01) possibly_damaging(0.904) TCGA-D7-8572-01 6 112393234 112393234 C T TUBE1 Nonsense_Mutation p.W380* 0.19 TCGA-D7-8572-01 6 122766247 122766247 A T SERINC1 Missense_Mutation p.V435E 0.18 tolerated(0.11) benign(0.148) TCGA-D7-8572-01 6 27100904 27100904 C G HIST1H2AG Silent p.R18R 0.29 TCGA-D7-8572-01 6 29323142 29323142 C A OR5V1 Missense_Mutation p.L277F 0.17 tolerated(0.56) benign(0.29) TCGA-D7-8572-01 6 38835970 38835970 C A DNAH8 Missense_Mutation p.L2059M 0.23 probably_damaging(0.995) TCGA-D7-8572-01 6 69348940 69348940 A G BAI3 Missense_Mutation p.K125E 0.28 deleterious(0) probably_damaging(0.931) TCGA-D7-8572-01 6 72678732 72678732 A G RIMS1 Missense_Mutation p.R71G 0.21 deleterious(0.04) probably_damaging(0.942) TCGA-D7-8572-01 6 7373629 7373629 G A CAGE1 Missense_Mutation p.R475W 0.29 deleterious(0) possibly_damaging(0.656) TCGA-D7-8572-01 6 74123758 74123758 G C DDX43 Missense_Mutation p.R521T 0.20 deleterious(0.01) possibly_damaging(0.817) TCGA-D7-8572-01 6 74351547 74351547 C T SLC17A5 Missense_Mutation p.S131N 0.19 tolerated(0.4) benign(0.014) TCGA-D7-8572-01 6 7880471 7880471 G A BMP6 Silent p.A479A 0.21 TCGA-D7-8572-01 6 83900610 83900610 C G PGM3 Missense_Mutation p.R69P 0.21 deleterious(0) probably_damaging(0.997) TCGA-D7-8572-01 6 99860566 99860571 TTCTCT - PNISR In_Frame_Del p.R45_E46del 0.17 TCGA-D7-8572-01 7 128478750 128478750 C T FLNC Missense_Mutation p.T435M 0.06 tolerated(0.12) possibly_damaging(0.833) TCGA-D7-8572-01 7 138265374 138265374 C T TRIM24 Missense_Mutation p.P885S 0.24 tolerated(0.63) benign(0.001) TCGA-D7-8572-01 7 140171773 140171773 C G MKRN1 Missense_Mutation p.C75S 0.18 deleterious(0) probably_damaging(0.99) TCGA-D7-8572-01 7 146471365 146471365 A G CNTNAP2 Missense_Mutation p.K34E 0.18 tolerated(0.43) benign(0.01) TCGA-D7-8572-01 7 18631206 18631206 A C HDAC9 Missense_Mutation p.K161N 0.26 deleterious(0.02) probably_damaging(0.983) TCGA-D7-8572-01 7 44555510 44555510 C T NPC1L1 Missense_Mutation p.A1257T 0.08 deleterious(0) probably_damaging(0.999) TCGA-D7-8572-01 7 71036364 71036364 G C WBSCR17 Missense_Mutation p.E353Q 0.20 deleterious(0) possibly_damaging(0.61) TCGA-D7-8572-01 7 77797390 77797390 G A MAGI2 Silent p.A813A 0.23 TCGA-D7-8572-01 7 82997332 82997332 A G SEMA3E Missense_Mutation p.V633A 0.18 deleterious(0.02) benign(0.209) TCGA-D7-8572-01 7 91743061 91743061 C A CYP51A1 Missense_Mutation p.G483V 0.21 deleterious(0.01) probably_damaging(0.945) TCGA-D7-8572-01 8 113318256 113318256 T A CSMD3 Missense_Mutation p.N2684I 0.21 deleterious(0.02) probably_damaging(0.983) TCGA-D7-8572-01 8 113348959 113348959 C A CSMD3 Missense_Mutation p.R2314I 0.15 tolerated(0.11) benign(0.063) TCGA-D7-8572-01 8 128428897 128428897 C T POU5F1B Silent p.I262I 0.21 TCGA-D7-8572-01 8 145106219 145106219 C T OPLAH 3'UTR 0.13 TCGA-D7-8572-01 8 27634042 27634042 C T ESCO2 Nonsense_Mutation p.Q73* 0.16 TCGA-D7-8572-01 8 38874807 38874807 C T ADAM9 Silent p.H160H 0.17 TCGA-D7-8572-01 8 41798853 41798853 T C KAT6A Missense_Mutation p.Q849R 0.16 possibly_damaging(0.451) TCGA-D7-8572-01 8 73849089 73849089 C T KCNB2 Missense_Mutation p.S500L 0.15 deleterious(0.01) benign(0.343) TCGA-D7-8572-01 8 74526145 74526145 C A STAU2 Missense_Mutation p.R242L 0.29 deleterious(0.04) possibly_damaging(0.81) TCGA-D7-8572-01 8 8185863 8185863 G A SGK223 Missense_Mutation p.P810L 0.16 probably_damaging(0.997) TCGA-D7-8572-01 9 130206660 130206660 G A ZNF79 Silent p.G227G 0.18 TCGA-D7-8572-01 9 21206570 21206570 G A IFNA10 Missense_Mutation p.S176L 0.06 tolerated(0.05) probably_damaging(0.983) TCGA-D7-8572-01 9 21350353 21350353 T C IFNA6 Silent p.S178S 0.20 TCGA-D7-8572-01 9 39175978 39175978 C A CNTNAP3 Missense_Mutation p.A347S 0.11 tolerated(0.08) benign(0.056) TCGA-D7-8572-01 9 5069141 5069141 G A JAK2 Silent p.Q482Q 0.17 TCGA-D7-8572-01 9 84531747 84531747 C A SPATA31D5P RNA 0.09 TCGA-D7-8572-01 9 86585140 86585140 C T HNRNPK Missense_Mutation p.R433Q 0.20 tolerated(0.09) benign(0.034) TCGA-D7-8572-01 9 991171 991171 G C DMRT3 3'UTR 0.18 TCGA-D7-8572-01 X 120008811 120008811 C T CT47B1 Silent p.E238E 0.41 TCGA-D7-8572-01 X 28807512 28807512 A G IL1RAPL1 Missense_Mutation p.S18G 0.36 tolerated(0.68) benign(0) TCGA-D7-8572-01 X 54263436 54263436 G T WNK3 Missense_Mutation p.S1521R 0.39 deleterious(0) possibly_damaging(0.774) TCGA-D7-8572-01 X 57934628 57934628 T G ZXDA Missense_Mutation p.S743R 0.40 deleterious(0.03) possibly_damaging(0.535) TCGA-D7-8572-01 X 57935041 57935041 G A ZXDA Missense_Mutation p.S605F 0.33 deleterious(0) possibly_damaging(0.794) TCGA-D7-8572-01 X 83129025 83129025 G A CYLC1 Missense_Mutation p.V437I 0.33 tolerated(0.55) benign(0.198) TCGA-D7-8572-01 X 86880644 86880644 C A KLHL4 Missense_Mutation p.T391N 0.54 tolerated(0.43) benign(0.197) TCGA-D7-8573-01 10 51580946 51580946 C T NCOA4 Nonsense_Mutation p.Q133* 0.30 TCGA-D7-8573-01 11 108121429 108121429 C A ATM Missense_Mutation p.L413I 0.14 deleterious(0) probably_damaging(0.999) TCGA-D7-8573-01 11 132016184 132016184 T G NTM Missense_Mutation p.I59S 0.30 deleterious(0) benign(0.109) TCGA-D7-8573-01 11 32956285 32956285 A T QSER1 Missense_Mutation p.S1032C 0.47 deleterious(0.03) benign(0.376) TCGA-D7-8573-01 11 89028354 89028354 A C TYR Missense_Mutation p.Q470H 0.18 deleterious(0.04) probably_damaging(0.998) TCGA-D7-8573-01 11 9534124 9534124 C A ZNF143 Missense_Mutation p.S502Y 0.29 deleterious(0) possibly_damaging(0.736) TCGA-D7-8573-01 12 103352565 103352565 C T ASCL1 Silent p.S181S 0.09 TCGA-D7-8573-01 12 10373115 10373115 C T GABARAPL1 Silent p.N82N 0.14 TCGA-D7-8573-01 12 10588583 10588583 C A KLRC2 Translation_Start_Site p.M1? 0.14 deleterious(0) probably_damaging(0.999) TCGA-D7-8573-01 12 109680320 109680320 C G ACACB Missense_Mutation p.L1701V 0.13 tolerated(0.28) benign(0.028) TCGA-D7-8573-01 12 22089622 22089622 G C ABCC9 5'Flank 0.23 TCGA-D7-8573-01 12 32481286 32481286 C T BICD1 Missense_Mutation p.R633W 0.42 deleterious(0.01) probably_damaging(1) TCGA-D7-8573-01 12 45269417 45269417 C T NELL2 Intron 0.32 TCGA-D7-8573-01 12 48091496 48091496 T C RPAP3 Missense_Mutation p.I101V 0.29 tolerated(0.44) possibly_damaging(0.456) TCGA-D7-8573-01 12 57348759 57348759 C T RDH16 Missense_Mutation p.R168Q 0.18 deleterious(0.01) possibly_damaging(0.453) TCGA-D7-8573-01 12 58139600 58139600 A G TSPAN31 Missense_Mutation p.I46V 0.30 tolerated(1) probably_damaging(0.998) TCGA-D7-8573-01 12 6232000 6232000 G A VWF Intron 0.47 TCGA-D7-8573-01 13 51921358 51921358 G A SERPINE3 Missense_Mutation p.E230K 0.15 deleterious(0) probably_damaging(0.941) TCGA-D7-8573-01 13 84454740 84454740 T C SLITRK1 Silent p.P301P 0.08 TCGA-D7-8573-01 14 104624226 104624226 G A KIF26A Silent p.P290P 0.31 TCGA-D7-8573-01 15 27128531 27128531 G T GABRA5 Missense_Mutation p.R108S 0.59 deleterious(0) probably_damaging(0.999) TCGA-D7-8573-01 15 55657471 55657474 CTGA - CCPG1 Frame_Shift_Del p.V247Efs*8 0.08 TCGA-D7-8573-01 15 77907869 77907869 C T LINGO1 Missense_Mutation p.R127H 0.14 deleterious(0.04) probably_damaging(0.982) TCGA-D7-8573-01 15 78526816 78526816 C T ACSBG1 Missense_Mutation p.G10S 0.37 tolerated_low_confidence(0.81) benign(0.001) TCGA-D7-8573-01 17 39919515 39919515 T C JUP Missense_Mutation p.N406S 0.40 tolerated(0.13) benign(0.111) TCGA-D7-8573-01 17 48655546 48655546 C T CACNA1G Intron 0.25 TCGA-D7-8573-01 17 79846121 79846121 G C ALYREF Missense_Mutation p.A259G 0.38 deleterious(0.02) possibly_damaging(0.87) TCGA-D7-8573-01 18 32398276 32398276 G A DTNA Missense_Mutation p.M286I 0.29 deleterious(0.05) benign(0.259) TCGA-D7-8573-01 19 20808112 20808116 GTGTA - ZNF626 Frame_Shift_Del p.T190* 0.18 TCGA-D7-8573-01 19 38818044 38818044 C T KCNK6 3'UTR 0.47 TCGA-D7-8573-01 19 41888765 41888765 T C TMEM91 Missense_Mutation p.V100A 0.09 deleterious(0) possibly_damaging(0.556) TCGA-D7-8573-01 19 49136834 49136834 G A DBP Missense_Mutation p.A210V 0.41 deleterious(0) possibly_damaging(0.621) TCGA-D7-8573-01 19 51192535 51192535 C T SHANK1 Missense_Mutation p.D656N 0.23 benign(0.242) TCGA-D7-8573-01 19 51918541 51918541 C T SIGLEC10 Silent p.G408G 0.22 TCGA-D7-8573-01 19 55451653 55451653 G A NLRP7 Silent p.G178G 0.18 TCGA-D7-8573-01 19 56419268 56419268 C A NLRP13 Missense_Mutation p.Q779H 0.52 tolerated(0.58) benign(0) TCGA-D7-8573-01 19 58199305 58199305 T A ZNF551 Silent p.T554T 0.08 TCGA-D7-8573-01 1 149754281 149754281 C T FCGR1A 5'UTR 0.45 TCGA-D7-8573-01 1 155263039 155263039 G A PKLR Silent p.T455T 0.48 TCGA-D7-8573-01 1 161188816 161188816 C T FCER1G 3'UTR 0.62 TCGA-D7-8573-01 1 208061454 208061454 G T CD34 Intron 0.08 TCGA-D7-8573-01 1 225590936 225590936 T C LBR 3'UTR 0.22 TCGA-D7-8573-01 1 228109319 228109319 C A WNT9A Missense_Mutation p.R333L 0.19 tolerated(0.05) benign(0.027) TCGA-D7-8573-01 1 243727110 243727110 A C AKT3 Missense_Mutation p.I287S 0.51 deleterious(0) probably_damaging(0.977) TCGA-D7-8573-01 1 46746843 46746843 C G LRRC41 Silent p.G570G 0.31 TCGA-D7-8573-01 1 89657071 89657071 A G GBP4 Silent p.H263H 0.20 TCGA-D7-8573-01 20 30671747 30671747 G A HCK Missense_Mutation p.V195M 0.62 deleterious(0) probably_damaging(0.979) TCGA-D7-8573-01 20 57269511 57269511 G A NPEPL1 Missense_Mutation p.A124T 0.27 deleterious(0.04) benign(0.304) TCGA-D7-8573-01 20 61637750 61637750 C T BHLHE23 Missense_Mutation p.R110Q 0.35 deleterious(0) probably_damaging(0.999) TCGA-D7-8573-01 20 61981757 61981757 G A CHRNA4 Missense_Mutation p.R336C 0.39 deleterious(0.01) probably_damaging(0.967) TCGA-D7-8573-01 21 27254029 27254029 G A APP Silent p.N755N 0.09 TCGA-D7-8573-01 21 28214836 28214836 T C ADAMTS1 Missense_Mutation p.N300S 0.28 deleterious(0) possibly_damaging(0.651) TCGA-D7-8573-01 22 16449180 16449180 T G OR11H1 Silent p.R209R 0.14 TCGA-D7-8573-01 22 35789509 35789509 G A HMOX1 Missense_Mutation p.R262H 0.20 tolerated(0.61) benign(0) TCGA-D7-8573-01 2 153572629 153572629 A G PRPF40A Silent p.P32P 0.39 TCGA-D7-8573-01 2 173335747 173335747 A C ITGA6 Missense_Mutation p.N230T 0.09 deleterious(0.03) benign(0.173) TCGA-D7-8573-01 2 225714253 225714253 G A DOCK10 Missense_Mutation p.H736Y 0.53 deleterious(0) probably_damaging(0.997) TCGA-D7-8573-01 2 238303388 238303388 G A COL6A3 Missense_Mutation p.A184V 0.05 possibly_damaging(0.835) TCGA-D7-8573-01 2 39213093 39213093 C A SOS1 Missense_Mutation p.V1292F 0.08 deleterious_low_confidence(0) benign(0.093) TCGA-D7-8573-01 2 9676834 9676834 G A ADAM17 Silent p.H118H 0.20 TCGA-D7-8573-01 3 148889990 148889990 G A HPS3 Missense_Mutation p.R999Q 0.19 tolerated(0.93) benign(0.003) TCGA-D7-8573-01 3 154139263 154139263 G A GPR149 Silent p.G396G 0.39 TCGA-D7-8573-01 3 33135527 33135527 G C TMPPE Missense_Mutation p.S54W 0.12 deleterious(0.01) probably_damaging(0.958) TCGA-D7-8573-01 3 41266123 41266143 TACCACAGCTCCTTCTCTGAG - CTNNB1 In_Frame_Del p.T41_S47del 0.40 TCGA-D7-8573-01 4 110882065 110882065 G A EGF Missense_Mutation p.G370E 0.17 deleterious(0) probably_damaging(0.994) TCGA-D7-8573-01 4 155254019 155254019 T C DCHS2 Missense_Mutation p.Q615R 0.32 tolerated(0.45) benign(0.014) TCGA-D7-8573-01 4 1843118 1843118 G A LETM1 Missense_Mutation p.R184C 0.29 deleterious(0) probably_damaging(0.953) TCGA-D7-8573-01 4 85701357 85701357 A G WDFY3 Silent p.D1423D 0.27 TCGA-D7-8573-01 4 983161 983161 G A SLC26A1 Silent p.Y522Y 0.33 TCGA-D7-8573-01 5 140573784 140573784 C T PCDHB10 Silent p.D553D 0.04 TCGA-D7-8573-01 5 140736646 140736646 C T PCDHGA4 Missense_Mutation p.R627C 0.68 deleterious_low_confidence(0.02) benign(0.344) TCGA-D7-8573-01 5 149505106 149505106 T G PDGFRB Missense_Mutation p.E570A 0.14 deleterious(0) probably_damaging(0.97) TCGA-D7-8573-01 5 156770404 156770404 G A FNDC9 Silent p.S47S 0.62 TCGA-D7-8573-01 5 161300176 161300176 A C GABRA1 Missense_Mutation p.K103N 0.71 deleterious(0.04) probably_damaging(0.995) TCGA-D7-8573-01 5 169535494 169535494 A C FOXI1 Missense_Mutation p.N339T 0.54 tolerated(0.19) benign(0.146) TCGA-D7-8573-01 5 169535495 169535495 C A FOXI1 Missense_Mutation p.N339K 0.57 tolerated(0.11) benign(0.146) TCGA-D7-8573-01 5 33951681 33951681 G A SLC45A2 Silent p.S378S 0.58 TCGA-D7-8573-01 5 72419284 72419284 C T TMEM171 Silent p.F28F 0.67 TCGA-D7-8573-01 6 138617959 138617959 C T KIAA1244 Missense_Mutation p.S1172F 0.08 deleterious(0.01) possibly_damaging(0.724) TCGA-D7-8573-01 6 146214432 146214432 T C SHPRH Missense_Mutation p.H1598R 0.12 deleterious(0) possibly_damaging(0.812) TCGA-D7-8573-01 6 150322612 150322612 G A RAET1K RNA 0.34 TCGA-D7-8573-01 6 165809927 165809927 A G PDE10A Missense_Mutation p.S434P 0.11 deleterious(0) probably_damaging(0.972) TCGA-D7-8573-01 6 25813353 25813353 C T SLC17A1 Silent p.K235K 0.23 TCGA-D7-8573-01 6 31605358 31605358 C T PRRC2A Missense_Mutation p.R2157C 0.30 unknown(0) TCGA-D7-8573-01 6 52137104 52137104 C T MCM3 Missense_Mutation p.A653T 0.22 tolerated(0.27) possibly_damaging(0.557) TCGA-D7-8573-01 6 70049284 70049284 C T BAI3 Missense_Mutation p.A1116V 0.41 deleterious(0) possibly_damaging(0.504) TCGA-D7-8573-01 6 76023075 76023075 G A FILIP1 Missense_Mutation p.R825W 0.42 deleterious(0) probably_damaging(0.977) TCGA-D7-8573-01 6 90387382 90387382 C T MDN1 Missense_Mutation p.R4149H 0.11 benign(0.051) TCGA-D7-8573-01 6 96651315 96651315 C T FUT9 Missense_Mutation p.T95M 0.06 tolerated(0.23) possibly_damaging(0.475) TCGA-D7-8573-01 7 140045671 140045671 C T SLC37A3 Missense_Mutation p.S375N 0.24 deleterious(0.04) benign(0.098) TCGA-D7-8573-01 7 156755738 156755738 C T NOM1 Missense_Mutation p.R594C 0.30 deleterious(0) probably_damaging(0.962) TCGA-D7-8573-01 7 20824781 20824781 C T SP8 Missense_Mutation p.E219K 0.33 tolerated(0.16) benign(0.067) TCGA-D7-8573-01 7 38299670 38299670 C T TRGC1 3'UTR 0.17 TCGA-D7-8573-01 7 48312083 48312083 A C ABCA13 Missense_Mutation p.E940D 0.28 benign(0.012) TCGA-D7-8573-01 7 6623050 6623050 T A ZDHHC4 Missense_Mutation p.S162T 0.34 deleterious(0) probably_damaging(0.99) TCGA-D7-8573-01 7 94293259 94293259 C T PEG10 Missense_Mutation p.R131C 0.45 deleterious(0) probably_damaging(0.94) TCGA-D7-8573-01 8 142165949 142165949 A T DENND3 Missense_Mutation p.E279V 0.06 deleterious(0) probably_damaging(1) TCGA-D7-8573-01 8 145150852 145150852 G C CYC1 Silent p.V82V 0.40 TCGA-D7-8573-01 9 100447318 100447318 A G XPA Missense_Mutation p.V187A 0.36 tolerated(0.52) benign(0.012) TCGA-D7-8573-01 9 130478571 130478571 G A PTRH1 5'UTR 0.29 TCGA-D7-8573-01 9 131517699 131517699 C T ZER1 Missense_Mutation p.R49Q 0.43 tolerated(0.06) benign(0.004) TCGA-D7-8573-01 9 35792588 35792588 C T NPR2 Silent p.P61P 0.18 TCGA-D7-8573-01 9 71852827 71852827 C G TJP2 Missense_Mutation p.P769R 0.51 deleterious(0) probably_damaging(0.998) TCGA-D7-8573-01 9 78711019 78711019 G A PCSK5 Splice_Site p.X369_splice 0.26 TCGA-D7-8573-01 9 79322403 79322403 A G PRUNE2 Missense_Mutation p.V1596A 0.20 tolerated(0.62) benign(0.079) TCGA-D7-8573-01 X 125686669 125686669 C T DCAF12L1 5'UTR 0.15 TCGA-D7-8573-01 X 27998138 27998138 G A DCAF8L1 Silent p.D438D 0.20 TCGA-D7-8573-01 X 5821348 5821348 G A NLGN4X Silent p.A457A 0.81 TCGA-D7-8574-01 10 15634288 15634288 G A ITGA8 Nonsense_Mutation p.R743* 0.11 TCGA-D7-8574-01 12 100811871 100811871 C T SLC17A8 Silent p.N454N 0.06 TCGA-D7-8574-01 12 130840101 130840101 C T PIWIL1 Silent p.N431N 0.04 TCGA-D7-8574-01 12 27841317 27841317 G A PPFIBP1 Silent p.A825A 0.06 TCGA-D7-8574-01 15 81589340 81589340 C T IL16 Silent p.A658A 0.10 TCGA-D7-8574-01 16 58619350 58619350 T G CNOT1 Missense_Mutation p.D233A 0.09 deleterious(0.03) possibly_damaging(0.478) TCGA-D7-8574-01 16 68842595 68842595 G T CDH1 Splice_Site p.X178_splice 0.15 TCGA-D7-8574-01 17 43923555 43923555 G A SPPL2C Missense_Mutation p.R428Q 0.08 tolerated(0.08) benign(0.093) TCGA-D7-8574-01 17 48680542 48680542 G A CACNA1G Missense_Mutation p.R1384Q 0.11 deleterious(0) probably_damaging(0.983) TCGA-D7-8574-01 18 48443718 48443718 C T ME2 Missense_Mutation p.A157V 0.07 tolerated(0.37) benign(0.173) TCGA-D7-8574-01 18 61067862 61067862 C A VPS4B Missense_Mutation p.V187L 0.08 deleterious(0.01) probably_damaging(0.99) TCGA-D7-8574-01 18 67365769 67365769 C T DOK6 Missense_Mutation p.P180L 0.06 deleterious(0) probably_damaging(1) TCGA-D7-8574-01 19 19168421 19168421 G A ARMC6 Missense_Mutation p.G497D 0.07 deleterious(0) probably_damaging(0.992) TCGA-D7-8574-01 19 4154997 4154997 C T CREB3L3 Silent p.G43G 0.06 TCGA-D7-8574-01 1 12887623 12887623 T G PRAMEF11 Missense_Mutation p.E78D 0.05 deleterious(0.02) possibly_damaging(0.547) TCGA-D7-8574-01 1 161967627 161967627 G A OLFML2B Missense_Mutation p.R488W 0.06 deleterious(0) probably_damaging(0.953) TCGA-D7-8574-01 1 175292512 175292512 C T TNR Missense_Mutation p.R1353Q 0.06 deleterious(0.01) possibly_damaging(0.826) TCGA-D7-8574-01 1 53558323 53558323 G A SLC1A7 Silent p.L312L 0.08 TCGA-D7-8574-01 1 95367785 95367785 A G CNN3 Silent p.A92A 0.15 TCGA-D7-8574-01 20 14066374 14066374 G A MACROD2 Missense_Mutation p.A91T 0.10 deleterious(0) probably_damaging(0.998) TCGA-D7-8574-01 20 23065099 23065099 G A CD93 Silent p.D577D 0.07 TCGA-D7-8574-01 20 3355774 3355774 C T C20orf194 Splice_Site p.X137_splice 0.08 TCGA-D7-8574-01 20 57484421 57484421 G A GNAS Missense_Mutation p.R844H 0.08 deleterious(0.01) probably_damaging(1) TCGA-D7-8574-01 2 109399073 109399073 C A RANBP2 Missense_Mutation p.Q3042K 0.09 tolerated(0.53) benign(0.063) TCGA-D7-8574-01 2 113590381 113590381 C T IL1B Nonsense_Mutation p.W108* 0.05 TCGA-D7-8574-01 2 179483430 179483430 G A TTN Missense_Mutation p.T15616M 0.06 TCGA-D7-8574-01 2 179612559 179612559 T C TTN Intron 0.05 TCGA-D7-8574-01 2 28635103 28635103 G A FOSL2 Missense_Mutation p.G257S 0.07 tolerated(0.74) benign(0.06) TCGA-D7-8574-01 3 108159995 108159995 T C MYH15 Missense_Mutation p.E943G 0.06 deleterious(0.05) possibly_damaging(0.521) TCGA-D7-8574-01 3 126751309 126751309 G A PLXNA1 Missense_Mutation p.A1771T 0.05 deleterious(0) probably_damaging(1) TCGA-D7-8574-01 3 154886414 154886414 C T MME Silent p.H638H 0.10 TCGA-D7-8574-01 3 184073198 184073198 G A CLCN2 Silent p.N430N 0.08 TCGA-D7-8574-01 3 49405933 49405933 G T RHOA Missense_Mutation p.L69M 0.05 deleterious(0) possibly_damaging(0.881) TCGA-D7-8574-01 3 49405956 49405956 G T RHOA Missense_Mutation p.A61D 0.06 deleterious(0) probably_damaging(0.998) TCGA-D7-8574-01 3 64527016 64527016 G C ADAMTS9 Missense_Mutation p.F1789L 0.04 deleterious(0) probably_damaging(0.926) TCGA-D7-8574-01 5 148754004 148754004 C T IL17B Silent p.P157P 0.08 TCGA-D7-8574-01 6 122743424 122743424 G A HSF2 Missense_Mutation p.V271I 0.05 tolerated(0.29) benign(0.001) TCGA-D7-8574-01 6 146720605 146720605 C A GRM1 Nonsense_Mutation p.Y810* 0.06 TCGA-D7-8574-01 6 29274611 29274611 G A OR14J1 Missense_Mutation p.V49M 0.09 tolerated(0.11) benign(0.007) TCGA-D7-8574-01 6 34214824 34214824 G A C6orf1 Missense_Mutation p.P41L 0.10 tolerated_low_confidence(0.07) probably_damaging(0.988) TCGA-D7-8574-01 6 42231269 42231269 G A TRERF1 Missense_Mutation p.P558L 0.06 tolerated(0.19) possibly_damaging(0.713) TCGA-D7-8574-01 6 47501376 47501376 G T CD2AP Missense_Mutation p.L68F 0.07 tolerated(0.54) benign(0.03) TCGA-D7-8574-01 7 146536823 146536823 T C CNTNAP2 Missense_Mutation p.S77P 0.06 deleterious(0.01) possibly_damaging(0.625) TCGA-D7-8574-01 7 22896252 22896252 A T SNORD93 RNA 0.08 TCGA-D7-8574-01 7 2594051 2594051 G A BRAT1 Silent p.C5C 0.12 TCGA-D7-8574-01 9 127990211 127990211 A G RABEPK Silent p.P183P 0.09 TCGA-D7-8574-01 X 17745826 17745826 G A NHS Silent p.L1179L 0.22 TCGA-D7-8574-01 X 27840218 27840218 C A MAGEB10 Missense_Mutation p.N265K 0.16 deleterious(0) possibly_damaging(0.904) TCGA-D7-8574-01 X 99551591 99551591 C A PCDH19 Missense_Mutation p.C1044F 0.16 deleterious_low_confidence(0) benign(0.088) TCGA-D7-8575-01 10 108336956 108336957 - T SORCS1 3'Flank 0.31 TCGA-D7-8575-01 11 108172425 108172426 - A ATM Frame_Shift_Ins p.T1745Dfs*4 0.21 TCGA-D7-8575-01 11 46726259 46726259 C G ZNF408 Missense_Mutation p.R337G 0.35 tolerated(0.32) benign(0.003) TCGA-D7-8575-01 11 48510483 48510483 G A OR4A47 Missense_Mutation p.V47I 0.34 tolerated_low_confidence(0.65) benign(0.013) TCGA-D7-8575-01 11 609019 609019 G A PHRF1 Missense_Mutation p.R1187Q 0.57 tolerated(0.1) benign(0.033) TCGA-D7-8575-01 11 61102195 61102195 C T DAK 5'UTR 0.22 TCGA-D7-8575-01 11 64084799 64084799 G A TRMT112 Silent p.P39P 0.26 TCGA-D7-8575-01 11 67021038 67021038 A G KDM2A Missense_Mutation p.D1016G 0.24 deleterious(0) probably_damaging(0.941) TCGA-D7-8575-01 11 67191316 67191316 C T CARNS1 Silent p.S699S 0.19 TCGA-D7-8575-01 11 77921697 77921697 G A USP35 Silent p.E932E 0.28 TCGA-D7-8575-01 12 111052045 111052045 G A TCTN1 Missense_Mutation p.V20M 0.40 tolerated_low_confidence(0.05) benign(0.21) TCGA-D7-8575-01 12 29639273 29639273 G A OVCH1 Missense_Mutation p.R301W 0.31 tolerated(0.06) benign(0.057) TCGA-D7-8575-01 12 53722839 53722840 - AGAG SP7 Frame_Shift_Ins p.D130Sfs*48 0.24 TCGA-D7-8575-01 12 55714592 55714592 C T OR6C1 Missense_Mutation p.S70L 0.26 deleterious_low_confidence(0.05) possibly_damaging(0.509) TCGA-D7-8575-01 12 9264996 9264996 G T A2M Nonsense_Mutation p.S136* 0.21 TCGA-D7-8575-01 13 84453672 84453672 G A SLITRK1 Silent p.S657S 0.24 TCGA-D7-8575-01 14 22038803 22038804 - CCTTA OR10G3 Nonsense_Mutation p.T25* 0.28 TCGA-D7-8575-01 15 88680668 88680668 G A NTRK3 Missense_Mutation p.L197F 0.59 tolerated(0.54) benign(0.058) TCGA-D7-8575-01 16 332693 332693 C T ARHGDIG Missense_Mutation p.A186V 0.33 tolerated(0.08) benign(0.114) TCGA-D7-8575-01 16 3781465 3781465 C T CREBBP Missense_Mutation p.V1634M 0.57 unknown(0) TCGA-D7-8575-01 16 84209614 84209614 C A DNAAF1 Missense_Mutation p.L592I 0.46 deleterious(0.04) benign(0.426) TCGA-D7-8575-01 17 11687794 11687794 C T DNAH9 Silent p.L2667L 0.17 TCGA-D7-8575-01 17 30660530 30660530 C T C17orf75 Missense_Mutation p.R294Q 0.32 tolerated(0.18) benign(0.01) TCGA-D7-8575-01 17 38859549 38859549 C T KRT24 Missense_Mutation p.G133R 0.34 deleterious(0.03) unknown(0) TCGA-D7-8575-01 17 62144105 62144105 C T ERN1 Missense_Mutation p.M256I 0.19 tolerated(0.21) benign(0.01) TCGA-D7-8575-01 19 34824689 34824689 T A KIAA0355 Silent p.V448V 0.38 TCGA-D7-8575-01 19 47700550 47700550 A T SAE1 Missense_Mutation p.D265V 0.31 deleterious(0) probably_damaging(1) TCGA-D7-8575-01 19 7593728 7593728 C T MCOLN1 Missense_Mutation p.R336W 0.17 deleterious(0.02) benign(0.258) TCGA-D7-8575-01 1 110883151 110883151 C T RBM15 Missense_Mutation p.T375M 0.32 deleterious(0) probably_damaging(0.997) TCGA-D7-8575-01 1 159162373 159162373 C T CADM3 Nonsense_Mutation p.R113* 0.27 TCGA-D7-8575-01 1 227171740 227171740 G A ADCK3 Intron 0.47 TCGA-D7-8575-01 1 32042921 32042921 C G TINAGL1 Missense_Mutation p.R58G 0.32 deleterious(0) probably_damaging(0.999) TCGA-D7-8575-01 1 45500007 45500008 - A ZSWIM5 Frame_Shift_Ins p.S809Ffs*48 0.24 TCGA-D7-8575-01 1 78958499 78958499 C A PTGFR Missense_Mutation p.T24K 0.31 tolerated(0.93) benign(0.124) TCGA-D7-8575-01 2 189863014 189863014 C G COL3A1 Missense_Mutation p.P649R 0.74 unknown(0) TCGA-D7-8575-01 2 44059008 44059008 T G ABCG5 Splice_Site p.X135_splice 0.56 TCGA-D7-8575-01 4 1821128 1821130 CTT - LETM1 In_Frame_Del p.K560del 0.43 TCGA-D7-8575-01 5 112868584 112868584 G T YTHDC2 Missense_Mutation p.Q228H 0.28 deleterious(0) probably_damaging(0.994) TCGA-D7-8575-01 5 145435659 145435659 C T SH3RF2 Missense_Mutation p.R480C 0.23 deleterious(0.02) possibly_damaging(0.762) TCGA-D7-8575-01 5 150901209 150901209 G A FAT2 Missense_Mutation p.R3649W 0.34 probably_damaging(1) TCGA-D7-8575-01 5 169141406 169141406 T C DOCK2 Missense_Mutation p.L629P 0.40 tolerated(0.28) benign(0.006) TCGA-D7-8575-01 5 24487742 24487742 C A CDH10 3'UTR 0.38 TCGA-D7-8575-01 5 71495819 71495819 C T MAP1B Missense_Mutation p.R2213C 0.32 probably_damaging(0.986) TCGA-D7-8575-01 5 96116195 96116195 A C ERAP1 Missense_Mutation p.S868A 0.19 deleterious(0) probably_damaging(0.911) TCGA-D7-8575-01 6 109770634 109770636 GTT - MICAL1 In_Frame_Del p.N495del 0.28 TCGA-D7-8575-01 6 44274912 44274912 C T AARS2 Intron 0.26 TCGA-D7-8575-01 6 84291982 84291982 G T SNAP91 Missense_Mutation p.T703K 0.34 tolerated(0.06) benign(0.444) TCGA-D7-8575-01 7 130144838 130144838 C T MEST Nonsense_Mutation p.Q317* 0.52 TCGA-D7-8575-01 7 50459524 50459524 C T IKZF1 Silent p.V229V 0.60 TCGA-D7-8575-01 7 57522201 57522201 T C ZNF716 Silent p.F25F 0.50 TCGA-D7-8575-01 7 71488683 71488683 C T CALN1 Missense_Mutation p.D154N 0.18 deleterious(0) benign(0.053) TCGA-D7-8575-01 7 81372752 81372752 C T HGF Missense_Mutation p.R261H 0.39 deleterious(0) probably_damaging(0.999) TCGA-D7-8575-01 7 99161724 99161724 C T ZNF655 Intron 0.58 TCGA-D7-8575-01 8 15967658 15967658 A C MSR1 Missense_Mutation p.I431S 0.60 deleterious(0.01) benign(0.044) TCGA-D7-8575-01 8 27293800 27293800 G A PTK2B Missense_Mutation p.V426I 0.47 tolerated(0.32) benign(0.001) TCGA-D7-8575-01 8 2886955 2886955 C A CSMD1 Missense_Mutation p.G2581C 0.17 probably_damaging(0.994) TCGA-D7-8575-01 9 116191236 116191236 T C C9orf43 Silent p.S388S 0.15 TCGA-D7-8575-01 9 139100598 139100598 G C QSOX2 Silent p.V691V 0.58 TCGA-D7-8575-01 9 90502005 90502005 C T SPATA31E1 Missense_Mutation p.P868L 0.11 tolerated(1) benign(0.001) TCGA-D7-8575-01 X 101908902 101908902 G T GPRASP1 Nonsense_Mutation p.E21* 0.64 TCGA-D7-8575-01 X 142717775 142717775 C T SLITRK4 Missense_Mutation p.V384I 0.58 deleterious(0.01) benign(0.056) TCGA-D7-8575-01 X 151900012 151900012 G T MAGEA12 Silent p.G263G 0.68 TCGA-D7-8575-01 X 91132496 91132496 G C PCDH11X Missense_Mutation p.E419D 0.69 deleterious(0.01) probably_damaging(0.998) TCGA-D7-8575-01 Y 4968065 4968065 G C PCDH11Y Missense_Mutation p.E816Q 0.63 tolerated(0.24) probably_damaging(0.962) TCGA-D7-8576-01 10 61847969 61847969 A G ANK3 Missense_Mutation p.V1159A 0.45 benign(0.443) TCGA-D7-8576-01 11 2334953 2334953 C T TSPAN32 Missense_Mutation p.R142W 0.25 tolerated(0.08) benign(0) TCGA-D7-8576-01 11 45671199 45671199 G A CHST1 3'UTR 0.35 TCGA-D7-8576-01 11 83252774 83252774 T C DLG2 Missense_Mutation p.M690V 0.14 tolerated(0.07) benign(0) TCGA-D7-8576-01 12 117768839 117768839 C A NOS1 Missense_Mutation p.Q12H 0.21 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-D7-8576-01 12 132195869 132195869 G A SFSWAP Missense_Mutation p.R32Q 0.13 tolerated_low_confidence(0.08) probably_damaging(0.988) TCGA-D7-8576-01 12 21958215 21958215 G C ABCC9 Intron 0.33 TCGA-D7-8576-01 12 40618972 40618972 G A LRRK2 Silent p.E13E 0.14 TCGA-D7-8576-01 12 53585371 53585371 C T ITGB7 Missense_Mutation p.R789H 0.17 tolerated(0.21) benign(0.007) TCGA-D7-8576-01 12 80717514 80717514 G - OTOGL Frame_Shift_Del p.A1356Qfs*29 0.26 TCGA-D7-8576-01 12 85277582 85277582 G T SLC6A15 Intron 0.13 TCGA-D7-8576-01 13 30077317 30077317 G A MTUS2 Missense_Mutation p.A1372T 0.06 deleterious(0) probably_damaging(0.998) TCGA-D7-8576-01 14 105223032 105223032 C T SIVA1 Silent p.C135C 0.61 TCGA-D7-8576-01 14 24897156 24897156 C G CBLN3 Missense_Mutation p.A153P 0.07 deleterious(0) probably_damaging(1) TCGA-D7-8576-01 15 25227090 25227090 T C SNRPN 3'Flank 0.06 TCGA-D7-8576-01 15 43661186 43661186 C A ZSCAN29 Missense_Mutation p.S153I 0.10 tolerated(0.1) benign(0.157) TCGA-D7-8576-01 15 48741086 48741086 A G FBN1 Silent p.R1850R 0.37 TCGA-D7-8576-01 16 21698948 21698948 G A OTOA Missense_Mutation p.R205H 0.27 tolerated(0.25) benign(0.003) TCGA-D7-8576-01 17 10368834 10368834 G A MYH4 Nonsense_Mutation p.R144* 0.46 TCGA-D7-8576-01 17 40936102 40936102 T C WNK4 Silent p.P313P 0.08 TCGA-D7-8576-01 17 51901905 51901905 G A KIF2B Missense_Mutation p.R504Q 0.36 deleterious(0) probably_damaging(0.999) TCGA-D7-8576-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.63 deleterious(0) probably_damaging(0.998) TCGA-D7-8576-01 17 8159798 8159798 A T PFAS Intron 0.08 TCGA-D7-8576-01 18 21399825 21399825 T A LAMA3 Missense_Mutation p.F723Y 0.05 probably_damaging(0.998) TCGA-D7-8576-01 18 43490580 43490580 G A EPG5 Missense_Mutation p.R1371C 0.52 deleterious(0) probably_damaging(0.988) TCGA-D7-8576-01 19 17756598 17756598 G A UNC13A Silent p.D747D 0.47 TCGA-D7-8576-01 19 2877321 2877321 G T ZNF556 Missense_Mutation p.R122L 0.25 tolerated(0.62) benign(0.031) TCGA-D7-8576-01 19 31767753 31767753 C T TSHZ3 Silent p.A982A 0.31 TCGA-D7-8576-01 19 43372111 43372120 GGAGGGTTCA - PSG1 3'UTR 0.16 TCGA-D7-8576-01 19 49552205 49552205 G A CGB8 5'UTR 0.26 TCGA-D7-8576-01 19 5033012 5033012 G A KDM4B Silent p.S37S 0.40 TCGA-D7-8576-01 1 160011396 160011396 G A KCNJ10 Silent p.Y309Y 0.11 TCGA-D7-8576-01 1 16460017 16460017 A C EPHA2 Missense_Mutation p.I608S 0.11 deleterious(0) probably_damaging(0.972) TCGA-D7-8576-01 1 169822808 169822808 T A C1orf112 3'UTR 0.21 TCGA-D7-8576-01 1 173570946 173570948 TGA - SLC9C2 5'UTR 0.13 TCGA-D7-8576-01 1 200818182 200818182 G A CAMSAP2 Missense_Mutation p.R762H 0.43 deleterious(0) probably_damaging(0.996) TCGA-D7-8576-01 1 40150246 40150246 G A HPCAL4 Silent p.P10P 0.44 TCGA-D7-8576-01 1 7725168 7725168 C A CAMTA1 Missense_Mutation p.A854D 0.52 deleterious_low_confidence(0.03) probably_damaging(0.997) TCGA-D7-8576-01 21 27425588 27425588 G A APP Silent p.C144C 0.15 TCGA-D7-8576-01 21 31691973 31691973 C T KRTAP26-1 Silent p.P127P 0.37 TCGA-D7-8576-01 22 18347703 18347703 C T MICAL3 Missense_Mutation p.R856Q 0.21 benign(0.027) TCGA-D7-8576-01 22 19341023 19341023 G C HIRA Missense_Mutation p.R902G 0.70 deleterious(0) benign(0.193) TCGA-D7-8576-01 22 21304209 21304209 C G CRKL 3'UTR 0.13 TCGA-D7-8576-01 2 217142429 217142429 G A MARCH4 Silent p.Y277Y 0.49 TCGA-D7-8576-01 2 241709052 241709052 C A KIF1A Silent p.R471R 0.22 TCGA-D7-8576-01 2 31489161 31489161 A G EHD3 Missense_Mutation p.E400G 0.09 deleterious(0.01) possibly_damaging(0.821) TCGA-D7-8576-01 2 77746894 77746894 C G LRRTM4 Missense_Mutation p.C34S 0.55 deleterious(0) probably_damaging(0.996) TCGA-D7-8576-01 3 48310616 48310616 C T ZNF589 3'UTR 0.24 TCGA-D7-8576-01 3 48630223 48630223 C T COL7A1 Silent p.P277P 0.20 TCGA-D7-8576-01 3 49049728 49049728 G A WDR6 Missense_Mutation p.C284Y 0.22 deleterious(0) probably_damaging(0.931) TCGA-D7-8576-01 3 51747088 51747088 G C GRM2 Missense_Mutation p.E350D 0.36 deleterious(0) possibly_damaging(0.903) TCGA-D7-8576-01 4 110460756 110460756 G A SEC24B Silent p.L1244L 0.16 TCGA-D7-8576-01 4 1164196 1164196 C T SPON2 Missense_Mutation p.A269T 0.30 tolerated(0.27) benign(0.103) TCGA-D7-8576-01 4 147755035 147755035 G A TTC29 Silent p.Y300Y 0.16 TCGA-D7-8576-01 4 166000864 166000864 C T TMEM192 Silent p.K254K 0.10 TCGA-D7-8576-01 4 85617299 85617299 C T WDFY3 Missense_Mutation p.E2909K 0.10 tolerated(0.06) possibly_damaging(0.877) TCGA-D7-8576-01 5 140229393 140229393 C T PCDHA9 Missense_Mutation p.T438M 0.34 deleterious_low_confidence(0.01) probably_damaging(0.947) TCGA-D7-8576-01 5 140749 140749 G A PLEKHG4B Silent p.R109R 0.38 TCGA-D7-8576-01 5 140782934 140782934 G A PCDHGA9 Missense_Mutation p.E139K 0.34 tolerated_low_confidence(0.13) benign(0.135) TCGA-D7-8576-01 5 140782949 140782949 G A PCDHGA9 Missense_Mutation p.E144K 0.32 deleterious_low_confidence(0) probably_damaging(1) TCGA-D7-8576-01 5 33989517 33989517 T G AMACR Missense_Mutation p.E277A 0.06 tolerated(0.22) benign(0.009) TCGA-D7-8576-01 5 5237184 5237184 G A ADAMTS16 Missense_Mutation p.R709H 0.25 tolerated(0.35) benign(0.006) TCGA-D7-8576-01 6 128643430 128643430 T G PTPRK Silent p.S83S 0.10 TCGA-D7-8576-01 6 35754860 35754860 C T CLPSL1 Missense_Mutation p.A62V 0.33 tolerated(0.15) benign(0.076) TCGA-D7-8576-01 7 17379566 17379566 C T AHR Missense_Mutation p.P706L 0.27 deleterious_low_confidence(0) benign(0.119) TCGA-D7-8576-01 7 18705931 18705931 C T HDAC9 Silent p.D521D 0.32 TCGA-D7-8576-01 8 120942125 120942125 C G DEPTOR Missense_Mutation p.F124L 0.40 tolerated(0.16) benign(0.024) TCGA-D7-8576-01 8 30977918 30977918 C T WRN Missense_Mutation p.P870S 0.24 tolerated(0.12) benign(0.311) TCGA-D7-8576-01 8 33230241 33230241 G A FUT10 Missense_Mutation p.R432W 0.27 deleterious(0.02) benign(0.001) TCGA-D7-8576-01 8 42611731 42611732 CT - CHRNA6 Frame_Shift_Del p.S204* 0.23 TCGA-D7-8576-01 X 100274308 100274308 A G TRMT2B Missense_Mutation p.I418T 0.16 tolerated(0.09) benign(0.021) TCGA-D7-8576-01 X 138633424 138633424 G A F9 Splice_Site p.X241_splice 0.47 TCGA-D7-8576-01 X 140984592 140984592 C A MAGEC3 Intron 0.19 TCGA-D7-8576-01 X 154157239 154157240 - T F8 Frame_Shift_Ins p.T1609Nfs*4 0.24 TCGA-D7-8576-01 X 34962140 34962140 C T FAM47B Missense_Mutation p.R398C 0.09 tolerated(0.19) benign(0.015) TCGA-D7-8576-01 X 50376816 50376816 C T SHROOM4 Missense_Mutation p.E753K 0.10 tolerated(0.06) possibly_damaging(0.718) TCGA-D7-8578-01 10 27702994 27702994 C T PTCHD3 Silent p.S62S 0.14 TCGA-D7-8578-01 11 1031906 1031906 C T MUC6 Missense_Mutation p.R88Q 0.15 unknown(0) TCGA-D7-8578-01 11 72695249 72695249 G T FCHSD2 Silent p.R197R 0.19 TCGA-D7-8578-01 11 92616530 92616530 G A FAT3 Missense_Mutation p.R4303Q 0.13 benign(0.336) TCGA-D7-8578-01 11 94861549 94861549 C T ENDOD1 Silent p.D103D 0.22 TCGA-D7-8578-01 12 7045235 7045235 G A ATN1 Missense_Mutation p.G269S 0.17 benign(0) TCGA-D7-8578-01 12 83250837 83250837 G A TMTC2 Silent p.T44T 0.08 TCGA-D7-8578-01 14 73190342 73190342 C T DPF3 Missense_Mutation p.R175Q 0.10 deleterious(0.01) possibly_damaging(0.776) TCGA-D7-8578-01 14 90767687 90767687 G A NRDE2 Missense_Mutation p.R481W 0.14 deleterious(0) possibly_damaging(0.781) TCGA-D7-8578-01 15 74325745 74325745 C T PML Silent p.A549A 0.10 TCGA-D7-8578-01 16 24583196 24583197 - A RBBP6 Frame_Shift_Ins p.T1604Nfs*5 0.13 TCGA-D7-8578-01 16 4797531 4797531 G T C16orf71 Missense_Mutation p.A490S 0.18 deleterious(0.01) probably_damaging(0.986) TCGA-D7-8578-01 16 57059473 57059473 C T NLRC5 Silent p.D206D 0.17 TCGA-D7-8578-01 16 57609350 57609350 G T GPR114 Missense_Mutation p.G496V 0.10 deleterious(0) probably_damaging(0.992) TCGA-D7-8578-01 17 1264542 1264542 C T YWHAE Missense_Mutation p.R141K 0.20 tolerated_low_confidence(0.08) probably_damaging(0.997) TCGA-D7-8578-01 17 26818792 26818792 T A SLC13A2 Missense_Mutation p.F316Y 0.36 deleterious(0) probably_damaging(1) TCGA-D7-8578-01 17 649304 649304 A C GEMIN4 Missense_Mutation p.L660W 0.08 deleterious(0) probably_damaging(0.991) TCGA-D7-8578-01 17 7577121 7577121 G T TP53 Missense_Mutation p.R273S 0.35 deleterious(0) probably_damaging(0.996) TCGA-D7-8578-01 18 14763871 14763871 C T ANKRD30B Missense_Mutation p.P336L 0.12 tolerated(0.09) possibly_damaging(0.685) TCGA-D7-8578-01 18 44260212 44260212 C T ST8SIA5 Silent p.A308A 0.23 TCGA-D7-8578-01 18 9535916 9535916 G A RALBP1 Missense_Mutation p.R650K 0.15 tolerated_low_confidence(0.3) benign(0.005) TCGA-D7-8578-01 19 15224376 15224376 C T SYDE1 Missense_Mutation p.R604C 0.22 deleterious(0.03) benign(0.003) TCGA-D7-8578-01 19 41920017 41920017 G A BCKDHA Missense_Mutation p.A147T 0.12 deleterious(0) probably_damaging(0.999) TCGA-D7-8578-01 19 55494535 55494535 G A NLRP2 Missense_Mutation p.R490H 0.17 deleterious(0.05) possibly_damaging(0.773) TCGA-D7-8578-01 1 109794776 109794776 G A CELSR2 Missense_Mutation p.R692Q 0.19 deleterious(0.05) probably_damaging(0.99) TCGA-D7-8578-01 1 114483281 114483281 G T HIPK1 Silent p.S92S 0.18 TCGA-D7-8578-01 1 150722491 150722491 A G CTSS Missense_Mutation p.Y262H 0.18 deleterious(0) probably_damaging(0.999) TCGA-D7-8578-01 1 185988786 185988786 A C HMCN1 Missense_Mutation p.K1862Q 0.18 probably_damaging(0.998) TCGA-D7-8578-01 1 192544903 192544903 G A RGS1 5'UTR 0.13 TCGA-D7-8578-01 1 196398803 196398803 A T KCNT2 Silent p.S241S 0.23 TCGA-D7-8578-01 1 201195249 201195249 G A IGFN1 Missense_Mutation p.R3595H 0.14 benign(0.304) TCGA-D7-8578-01 1 222892355 222892355 T C BROX Missense_Mutation p.Y64H 0.18 deleterious(0) probably_damaging(1) TCGA-D7-8578-01 1 41304234 41304234 G A KCNQ4 3'UTR 0.24 TCGA-D7-8578-01 1 76378585 76378585 T C MSH4 3'UTR 0.15 TCGA-D7-8578-01 1 79102793 79102793 G A IFI44L Missense_Mutation p.C318Y 0.15 deleterious(0) probably_damaging(1) TCGA-D7-8578-01 1 85736384 85736384 C T BCL10 Missense_Mutation p.R88Q 0.12 tolerated(0.12) probably_damaging(0.998) TCGA-D7-8578-01 20 30414609 30414609 C T MYLK2 Silent p.G364G 0.08 TCGA-D7-8578-01 20 3766016 3766016 C G CENPB Missense_Mutation p.W372S 0.29 deleterious(0) unknown(0) TCGA-D7-8578-01 20 47324856 47324856 C T PREX1 Missense_Mutation p.R242Q 0.11 deleterious(0) possibly_damaging(0.887) TCGA-D7-8578-01 20 48263510 48263510 G A B4GALT5 Missense_Mutation p.P119L 0.13 deleterious(0.01) probably_damaging(0.994) TCGA-D7-8578-01 22 19444143 19444143 G A UFD1L Silent p.D215D 0.12 TCGA-D7-8578-01 2 128937376 128937376 G A UGGT1 Missense_Mutation p.V1278M 0.05 deleterious(0) probably_damaging(0.999) TCGA-D7-8578-01 2 233347170 233347170 G A ECEL1 Missense_Mutation p.A585V 0.03 deleterious(0) probably_damaging(0.982) TCGA-D7-8578-01 2 25044392 25044392 G A ADCY3 Missense_Mutation p.R1041C 0.18 deleterious(0) probably_damaging(1) TCGA-D7-8578-01 2 30966280 30966280 G A CAPN13 Nonsense_Mutation p.R472* 0.11 TCGA-D7-8578-01 3 138724598 138724598 G A PRR23A Silent p.S171S 0.17 TCGA-D7-8578-01 3 38739948 38739948 C T SCN10A Missense_Mutation p.R1588Q 0.04 deleterious(0) benign(0.377) TCGA-D7-8578-01 3 48698891 48698891 G A CELSR3 Missense_Mutation p.R393C 0.10 deleterious(0) probably_damaging(0.982) TCGA-D7-8578-01 4 109010376 109010376 A G LEF1 Missense_Mutation p.V151A 0.22 deleterious(0.02) possibly_damaging(0.491) TCGA-D7-8578-01 4 122749209 122749209 T C BBS7 Intron 0.08 TCGA-D7-8578-01 4 183675916 183675916 G A TENM3 Missense_Mutation p.A1466T 0.16 deleterious(0.02) benign(0.042) TCGA-D7-8578-01 4 72313451 72313451 G T SLC4A4 Splice_Site p.X351_splice 0.30 TCGA-D7-8578-01 5 108698688 108698688 C A PJA2 Missense_Mutation p.W502L 0.13 deleterious(0.01) possibly_damaging(0.677) TCGA-D7-8578-01 5 150921854 150921854 T A FAT2 Missense_Mutation p.Y2945F 0.19 probably_damaging(0.999) TCGA-D7-8578-01 5 41934278 41934278 A C FBXO4 Missense_Mutation p.N256H 0.20 deleterious(0) probably_damaging(0.959) TCGA-D7-8578-01 5 7766854 7766854 A G ADCY2 Missense_Mutation p.T717A 0.21 tolerated(0.76) benign(0.001) TCGA-D7-8578-01 5 83476332 83476332 G T EDIL3 Nonsense_Mutation p.C78* 0.12 TCGA-D7-8578-01 6 100054944 100054945 - T PRDM13 Frame_Shift_Ins p.S13Efs*34 0.11 TCGA-D7-8578-01 6 31848468 31848468 C T EHMT2 Missense_Mutation p.R1145Q 0.25 tolerated(0.66) benign(0.005) TCGA-D7-8578-01 6 35260365 35260365 C T ZNF76 Silent p.C322C 0.16 TCGA-D7-8578-01 6 42141400 42141400 G A GUCA1A Missense_Mutation p.E17K 0.20 deleterious(0.02) benign(0.047) TCGA-D7-8578-01 7 40134360 40134360 C T CDK13 Silent p.S1440S 0.14 TCGA-D7-8578-01 7 95157511 95157511 G A ASB4 Missense_Mutation p.V292M 0.09 deleterious(0) possibly_damaging(0.526) TCGA-D7-8578-01 8 134233084 134233084 G A WISP1 Missense_Mutation p.D204N 0.09 tolerated(0.47) benign(0.026) TCGA-D7-8578-01 8 139323096 139323096 C T FAM135B Missense_Mutation p.A49T 0.06 tolerated(0.42) benign(0.001) TCGA-D7-8578-01 9 111741743 111741743 G A CTNNAL1 Missense_Mutation p.R307W 0.33 deleterious(0.01) benign(0.077) TCGA-D7-8578-01 9 73233887 73233887 C T TRPM3 Missense_Mutation p.V740M 0.14 deleterious(0.03) possibly_damaging(0.833) TCGA-D7-8578-01 X 54107882 54107882 T C FAM120C Missense_Mutation p.I951V 0.11 tolerated(0.39) probably_damaging(0.978) TCGA-D7-8578-01 X 72433514 72433514 A T NAP1L2 Missense_Mutation p.I272N 0.28 deleterious(0) possibly_damaging(0.837) TCGA-D7-8579-01 10 102257863 102257863 C A SEC31B Missense_Mutation p.A596S 0.12 tolerated(0.11) probably_damaging(0.922) TCGA-D7-8579-01 10 115910947 115910947 T G C10orf118 Missense_Mutation p.E264D 0.17 tolerated(0.06) benign(0.309) TCGA-D7-8579-01 10 118101582 118101582 A G CCDC172 Missense_Mutation p.D106G 0.21 deleterious(0.04) benign(0.142) TCGA-D7-8579-01 10 120354492 120354492 G A PRLHR Missense_Mutation p.R89C 0.12 deleterious(0) possibly_damaging(0.906) TCGA-D7-8579-01 10 15146039 15146039 T G RPP38 Silent p.P242P 0.09 TCGA-D7-8579-01 10 20465942 20465942 A C PLXDC2 Missense_Mutation p.T300P 0.15 deleterious(0) probably_damaging(0.999) TCGA-D7-8579-01 10 26462823 26462823 A C MYO3A Missense_Mutation p.E1210D 0.12 tolerated_low_confidence(0.16) benign(0.009) TCGA-D7-8579-01 10 31810825 31810825 A C ZEB1 Missense_Mutation p.Q855H 0.10 tolerated(0.13) benign(0.006) TCGA-D7-8579-01 10 5008119 5008119 A C AKR1C1 Missense_Mutation p.K33T 0.09 tolerated(0.18) benign(0.072) TCGA-D7-8579-01 10 98773796 98773796 T C SLIT1 Missense_Mutation p.Q1030R 0.13 tolerated(0.58) benign(0.001) TCGA-D7-8579-01 11 124294552 124294552 A C OR8B4 Missense_Mutation p.C72W 0.09 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-D7-8579-01 11 36614484 36614484 T C RAG2 Missense_Mutation p.E412G 0.12 deleterious(0.03) benign(0) TCGA-D7-8579-01 11 50003180 50003180 T C OR4C12 Silent p.T286T 0.11 TCGA-D7-8579-01 11 55595336 55595336 C A OR5L2 Silent p.I214I 0.17 TCGA-D7-8579-01 11 56258416 56258416 A G OR5M8 Missense_Mutation p.I144T 0.19 deleterious(0) benign(0.363) TCGA-D7-8579-01 11 5700392 5700392 A T TRIM5 Missense_Mutation p.L142H 0.08 deleterious(0) probably_damaging(0.999) TCGA-D7-8579-01 11 57193027 57193027 G A SLC43A3 Missense_Mutation p.R101C 0.19 deleterious(0) probably_damaging(1) TCGA-D7-8579-01 11 58189803 58189803 A C OR5B2 3'UTR 0.08 TCGA-D7-8579-01 11 73022184 73022184 G A ARHGEF17 Missense_Mutation p.R834H 0.18 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-D7-8579-01 11 88241767 88241767 G A GRM5 Missense_Mutation p.S1211L 0.12 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D7-8579-01 12 101477501 101477501 C T ANO4 Missense_Mutation p.R446W 0.11 deleterious(0) probably_damaging(0.986) TCGA-D7-8579-01 12 121438927 121438928 - T HNF1A Frame_Shift_Ins p.L611Afs*38 0.13 TCGA-D7-8579-01 12 130884319 130884319 A C RIMBP2 Missense_Mutation p.F1013V 0.08 deleterious(0) probably_damaging(0.997) TCGA-D7-8579-01 12 130935764 130935764 G A RIMBP2 Silent p.S143S 0.10 TCGA-D7-8579-01 12 132688116 132688116 G A GALNT9 Silent p.R33R 0.16 TCGA-D7-8579-01 12 58013948 58013948 T C SLC26A10 5'UTR 0.13 TCGA-D7-8579-01 12 9020616 9020616 C T A2ML1 Missense_Mutation p.T1299M 0.08 tolerated(0.08) benign(0.053) TCGA-D7-8579-01 12 97158901 97158901 A C C12orf55 Missense_Mutation p.N2729T 0.10 tolerated(0.12) benign(0) TCGA-D7-8579-01 13 109704747 109704747 A C MYO16 Missense_Mutation p.K969T 0.10 deleterious(0.01) probably_damaging(0.952) TCGA-D7-8579-01 13 26788949 26788949 C T RNF6 Missense_Mutation p.R357Q 0.12 tolerated(0.61) benign(0.013) TCGA-D7-8579-01 13 36699995 36699995 T G DCLK1 Missense_Mutation p.T94P 0.21 tolerated(0.11) unknown(0) TCGA-D7-8579-01 13 58208321 58208321 T C PCDH17 Silent p.A547A 0.13 TCGA-D7-8579-01 13 98828825 98828825 G A RNF113B Silent p.L222L 0.06 TCGA-D7-8579-01 14 42356155 42356155 C A LRFN5 Missense_Mutation p.N109K 0.17 deleterious(0) probably_damaging(0.998) TCGA-D7-8579-01 14 80669227 80669227 T G DIO2 Silent p.R245R 0.07 TCGA-D7-8579-01 14 94936126 94936126 T C SERPINA9 Missense_Mutation p.I36V 0.11 tolerated(0.38) benign(0.016) TCGA-D7-8579-01 15 24923084 24923084 A T NPAP1 Silent p.S690S 0.08 TCGA-D7-8579-01 15 25326477 25326477 A C SNORD116-15 RNA 0.08 TCGA-D7-8579-01 16 2813747 2813747 G A SRRM2 Missense_Mutation p.S1073N 0.13 benign(0.184) TCGA-D7-8579-01 16 29996795 29996795 C T TAOK2 Missense_Mutation p.R562W 0.12 deleterious(0) probably_damaging(0.96) TCGA-D7-8579-01 16 55909170 55909170 G A CES5A Intron 0.14 TCGA-D7-8579-01 16 81819590 81819590 C T PLCG2 5'UTR 0.10 TCGA-D7-8579-01 16 88017672 88017672 C T BANP Intron 0.12 TCGA-D7-8579-01 17 2298250 2298250 G A MNT Missense_Mutation p.P191L 0.15 tolerated(0.08) possibly_damaging(0.82) TCGA-D7-8579-01 17 3119769 3119769 T G OR1A1 Silent p.P285P 0.12 TCGA-D7-8579-01 17 34625653 34625653 G A CCL3L1 5'UTR 0.42 TCGA-D7-8579-01 17 38323766 38323766 C T CASC3 Nonsense_Mutation p.R518* 0.07 TCGA-D7-8579-01 17 44626381 44626381 G A LRRC37A2 Silent p.T1292T 0.08 TCGA-D7-8579-01 17 71223362 71223362 G A FAM104A Missense_Mutation p.P88L 0.10 tolerated(0.1) benign(0.013) TCGA-D7-8579-01 17 73124926 73124926 C G ARMC7 Silent p.R130R 0.14 TCGA-D7-8579-01 17 78348265 78348265 G A RNF213 Missense_Mutation p.R4317Q 0.08 benign(0.001) TCGA-D7-8579-01 17 8700939 8700939 G A MFSD6L Silent p.Y500Y 0.26 TCGA-D7-8579-01 18 40851687 40851687 G C SYT4 Silent p.S320S 0.13 TCGA-D7-8579-01 18 6958572 6958572 A G LAMA1 Missense_Mutation p.L2623P 0.12 deleterious(0) probably_damaging(0.994) TCGA-D7-8579-01 19 13936482 13936482 A G ZSWIM4 Silent p.P661P 0.08 TCGA-D7-8579-01 19 23836911 23836911 T G ZNF675 Missense_Mutation p.K275T 0.14 deleterious(0.01) probably_damaging(0.998) TCGA-D7-8579-01 19 35502408 35502408 C T GRAMD1A Missense_Mutation p.R186C 0.08 deleterious(0) probably_damaging(0.953) TCGA-D7-8579-01 19 36884252 36884252 T G ZFP82 Missense_Mutation p.K330N 0.11 tolerated(0.09) probably_damaging(0.952) TCGA-D7-8579-01 19 37238748 37238748 T A ZNF850 Missense_Mutation p.Y1065F 0.14 tolerated(0.17) benign(0.059) TCGA-D7-8579-01 19 55325333 55325333 G A KIR2DL4 Missense_Mutation p.A266T 0.18 tolerated(0.25) benign(0.032) TCGA-D7-8579-01 19 56954050 56954050 T C ZNF667 Missense_Mutation p.Q105R 0.10 tolerated(0.24) benign(0.027) TCGA-D7-8579-01 19 58723899 58723899 G A ZNF274 Missense_Mutation p.R450H 0.09 tolerated(0.61) benign(0.158) TCGA-D7-8579-01 1 142713900 142713900 A G RP11-417J8.6 RNA 0.11 TCGA-D7-8579-01 1 145699047 145699047 G A CD160 Silent p.H148H 0.10 TCGA-D7-8579-01 1 152280800 152280800 T G FLG Missense_Mutation p.S2188R 0.13 benign(0.307) TCGA-D7-8579-01 1 157667628 157667628 T G FCRL3 Missense_Mutation p.N127T 0.12 tolerated(0.55) benign(0.044) TCGA-D7-8579-01 1 158449668 158449668 A T OR10R2 Translation_Start_Site p.M1? 0.16 tolerated_low_confidence(0.33) benign(0) TCGA-D7-8579-01 1 169564011 169564011 C G SELP Missense_Mutation p.E736Q 0.17 deleterious(0.01) benign(0.412) TCGA-D7-8579-01 1 177250278 177250278 A G BRINP2 Missense_Mutation p.S656G 0.18 tolerated(0.35) benign(0.036) TCGA-D7-8579-01 1 181727164 181727164 G A CACNA1E Missense_Mutation p.V1471M 0.16 tolerated(1) possibly_damaging(0.623) TCGA-D7-8579-01 1 19181198 19181198 G A TAS1R2 Missense_Mutation p.R256C 0.16 deleterious(0) probably_damaging(0.969) TCGA-D7-8579-01 1 208390683 208390683 G A PLXNA2 Silent p.F195F 0.12 TCGA-D7-8579-01 1 213349743 213349743 C T RPS6KC1 Missense_Mutation p.P318S 0.13 tolerated(0.09) probably_damaging(0.928) TCGA-D7-8579-01 1 23836399 23836399 G A E2F2 Silent p.Y429Y 0.18 TCGA-D7-8579-01 1 26566316 26566316 C T CEP85 Silent p.H14H 0.15 TCGA-D7-8579-01 1 27100357 27100357 C T ARID1A Nonsense_Mutation p.Q1357* 0.10 TCGA-D7-8579-01 1 75038657 75038657 A C C1orf173 Missense_Mutation p.L913V 0.11 tolerated(0.15) benign(0.05) TCGA-D7-8579-01 1 92573497 92573497 G T BTBD8 Missense_Mutation p.V201L 0.19 tolerated(0.19) benign(0.009) TCGA-D7-8579-01 20 62664391 62664391 G A PRPF6 3'UTR 0.12 TCGA-D7-8579-01 21 10862949 10862949 A T IGHV1OR21-1 Missense_Mutation p.K82M 0.08 deleterious(0.05) benign(0.198) TCGA-D7-8579-01 21 10906876 10906876 T G TPTE 3'UTR 0.08 TCGA-D7-8579-01 21 31538305 31538305 T G CLDN17 Silent p.R211R 0.09 TCGA-D7-8579-01 22 30823179 30823179 C T MTFP1 Missense_Mutation p.R73C 0.12 tolerated(0.1) benign(0.022) TCGA-D7-8579-01 22 33265093 33265093 A G SYN3 Missense_Mutation p.F161L 0.15 deleterious(0) unknown(0) TCGA-D7-8579-01 2 10015998 10015998 G A TAF1B Silent p.T186T 0.14 TCGA-D7-8579-01 2 125660638 125660638 T C CNTNAP5 Missense_Mutation p.S1205P 0.24 tolerated(0.18) benign(0.221) TCGA-D7-8579-01 2 153001434 153001434 T C STAM2 Missense_Mutation p.N162S 0.15 tolerated(1) benign(0.003) TCGA-D7-8579-01 2 179583304 179583304 A C TTN Missense_Mutation p.L8177V 0.07 TCGA-D7-8579-01 2 185803464 185803464 C T ZNF804A Missense_Mutation p.A1114V 0.10 deleterious(0) benign(0.414) TCGA-D7-8579-01 2 215275115 215275115 G T SPAG16 3'UTR 0.17 TCGA-D7-8579-01 2 220497074 220497074 G A SLC4A3 Missense_Mutation p.V378M 0.08 deleterious(0.03) probably_damaging(0.977) TCGA-D7-8579-01 2 33740177 33740177 T C RASGRP3 5'UTR 0.06 TCGA-D7-8579-01 2 73518869 73518869 G A EGR4 Missense_Mutation p.R496C 0.10 deleterious(0) probably_damaging(0.998) TCGA-D7-8579-01 2 74077571 74077571 C T STAMBP Silent p.N312N 0.15 TCGA-D7-8579-01 3 13678019 13678019 C T FBLN2 Missense_Mutation p.R1097C 0.11 deleterious(0) probably_damaging(1) TCGA-D7-8579-01 3 178560673 178560673 T C KCNMB2 Missense_Mutation p.L219P 0.18 deleterious(0) possibly_damaging(0.866) TCGA-D7-8579-01 4 1377628 1377628 G A UVSSA Missense_Mutation p.G646R 0.09 tolerated(0.26) benign(0.017) TCGA-D7-8579-01 4 155157144 155157144 A G DCHS2 Missense_Mutation p.F2432S 0.12 deleterious(0) probably_damaging(0.999) TCGA-D7-8579-01 4 156136124 156136124 C T NPY2R Missense_Mutation p.R345W 0.12 deleterious(0) benign(0.386) TCGA-D7-8579-01 4 159136418 159136418 C G TMEM144 Missense_Mutation p.P62R 0.17 deleterious(0) possibly_damaging(0.882) TCGA-D7-8579-01 4 39439478 39439478 C T KLB Missense_Mutation p.R490W 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-D7-8579-01 4 96163619 96163619 A G UNC5C Silent p.L357L 0.17 TCGA-D7-8579-01 5 140257231 140257231 C T PCDHA12 Missense_Mutation p.A725V 0.14 tolerated_low_confidence(0.11) benign(0.027) TCGA-D7-8579-01 5 140558400 140558400 T C PCDHB8 Missense_Mutation p.V262A 0.04 deleterious_low_confidence(0.02) benign(0.22) TCGA-D7-8579-01 5 5239960 5239960 T G ADAMTS16 Silent p.T815T 0.13 TCGA-D7-8579-01 5 7804726 7804726 T G ADCY2 Missense_Mutation p.V935G 0.10 deleterious(0.01) probably_damaging(0.997) TCGA-D7-8579-01 6 114378466 114378466 A T HS3ST5 Missense_Mutation p.N332K 0.10 deleterious(0) probably_damaging(1) TCGA-D7-8579-01 6 133783490 133783490 T C EYA4 Missense_Mutation p.L152P 0.15 deleterious(0.04) probably_damaging(1) TCGA-D7-8579-01 6 138196897 138196897 C T TNFAIP3 Nonsense_Mutation p.Q187* 0.14 TCGA-D7-8579-01 6 151672610 151672610 C T AKAP12 Silent p.G1028G 0.13 TCGA-D7-8579-01 6 152737734 152737734 A C SYNE1 Silent p.T1946T 0.11 TCGA-D7-8579-01 6 152782807 152782807 A G SYNE1 Silent p.I773I 0.17 TCGA-D7-8579-01 6 160963737 160963737 T G LPA Missense_Mutation p.Q1834H 0.13 tolerated(0.08) possibly_damaging(0.778) TCGA-D7-8579-01 6 161969947 161969947 A G PARK2 Missense_Mutation p.L341P 0.10 deleterious(0) probably_damaging(0.999) TCGA-D7-8579-01 6 26234540 26234540 G C HIST1H1D Missense_Mutation p.P208A 0.14 tolerated(0.59) unknown(0) TCGA-D7-8579-01 6 43019974 43019974 T G CUL7 Missense_Mutation p.I237L 0.14 tolerated(1) benign(0.012) TCGA-D7-8579-01 6 43020260 43020260 G A CUL7 Silent p.I141I 0.12 TCGA-D7-8579-01 7 115580853 115580853 T C TFEC Missense_Mutation p.T266A 0.14 tolerated(0.66) benign(0.021) TCGA-D7-8579-01 7 137237206 137237206 A C DGKI Missense_Mutation p.L686V 0.15 tolerated(0.1) possibly_damaging(0.855) TCGA-D7-8579-01 7 141424832 141424832 C T WEE2 Missense_Mutation p.R410W 0.06 deleterious(0.03) probably_damaging(0.932) TCGA-D7-8579-01 7 21639582 21639582 A T DNAH11 Missense_Mutation p.I949F 0.13 benign(0.018) TCGA-D7-8579-01 7 21658722 21658722 A C DNAH11 Missense_Mutation p.K1425T 0.27 benign(0.003) TCGA-D7-8579-01 7 42005807 42005807 G A GLI3 Missense_Mutation p.T955M 0.16 deleterious(0) probably_damaging(0.997) TCGA-D7-8579-01 7 44147232 44147232 G A AEBP1 Silent p.P224P 0.09 TCGA-D7-8579-01 7 44579660 44579660 G A NPC1L1 Silent p.R112R 0.12 TCGA-D7-8579-01 7 63726871 63726871 A G ZNF679 Missense_Mutation p.K287R 0.11 tolerated(0.07) benign(0.03) TCGA-D7-8579-01 7 82544222 82544222 T G PCLO Missense_Mutation p.E4360D 0.14 unknown(0) TCGA-D7-8579-01 7 90338810 90338811 AT - CDK14 5'UTR 0.11 TCGA-D7-8579-01 7 90896057 90896057 T A FZD1 Missense_Mutation p.I621N 0.11 deleterious(0) probably_damaging(0.988) TCGA-D7-8579-01 8 104930678 104930678 G A RIMS2 Silent p.P682P 0.13 TCGA-D7-8579-01 8 59412593 59412593 A G CYP7A1 Missense_Mutation p.L22P 0.10 deleterious(0.01) possibly_damaging(0.553) TCGA-D7-8579-01 9 118950303 118950303 A G PAPPA Missense_Mutation p.N429S 0.31 tolerated(0.06) possibly_damaging(0.621) TCGA-D7-8579-01 9 8484153 8484153 G T PTPRD Missense_Mutation p.Q1127K 0.10 tolerated(0.57) benign(0.001) TCGA-D7-8579-01 X 103267793 103267793 G A H2BFWT Missense_Mutation p.P147L 0.10 deleterious(0) benign(0.091) TCGA-D7-8579-01 X 117577561 117577561 A C WDR44 Missense_Mutation p.K808T 0.15 deleterious(0.01) possibly_damaging(0.568) TCGA-D7-8579-01 X 118222914 118222914 T G KIAA1210 Missense_Mutation p.K760T 0.11 deleterious(0.03) possibly_damaging(0.472) TCGA-D7-8579-01 X 125298618 125298618 C T DCAF12L2 Silent p.A430A 0.17 TCGA-D7-8579-01 X 14863287 14863287 A C FANCB Missense_Mutation p.L540V 0.12 tolerated(1) benign(0.311) TCGA-D7-8579-01 X 153924213 153924213 G A GAB3 Silent p.D503D 0.10 TCGA-D7-8579-01 X 154283029 154283029 C T FUNDC2 3'UTR 0.10 TCGA-D7-8579-01 X 1584751 1584751 C T P2RY8 Missense_Mutation p.R234H 0.12 tolerated(0.09) possibly_damaging(0.864) TCGA-D7-8579-01 X 37027957 37027957 G A FAM47C Missense_Mutation p.D492N 0.14 tolerated_low_confidence(0.09) benign(0.348) TCGA-D7-8579-01 X 41002634 41002634 C T USP9X Missense_Mutation p.R418C 0.10 deleterious(0) probably_damaging(0.974) TCGA-D7-8579-01 X 78618190 78618190 T A ITM2A Splice_Site p.X148_splice 0.24 TCGA-D7-8579-01 X 83128538 83128538 G T CYLC1 Missense_Mutation p.K274N 0.16 deleterious(0) unknown(0) TCGA-D7-A4YT-01 10 102289218 102289218 G T NDUFB8 Missense_Mutation p.T44N 0.58 deleterious(0) probably_damaging(0.93) TCGA-D7-A4YT-01 10 103899167 103899167 G C PPRC1 Missense_Mutation p.S301T 0.28 deleterious(0) probably_damaging(0.965) TCGA-D7-A4YT-01 10 107005390 107005390 C A SORCS3 Missense_Mutation p.L987I 0.10 tolerated(0.69) benign(0.016) TCGA-D7-A4YT-01 10 113933596 113933596 C A GPAM Nonsense_Mutation p.E141* 0.29 TCGA-D7-A4YT-01 10 129237406 129237406 A C DOCK1 Missense_Mutation p.K1705Q 0.23 tolerated(0.15) possibly_damaging(0.788) TCGA-D7-A4YT-01 10 21101759 21101759 A C NEBL Silent p.A819A 0.08 TCGA-D7-A4YT-01 10 27412510 27412510 C G YME1L1 Silent p.V413V 0.30 TCGA-D7-A4YT-01 10 46999887 46999887 G T GPRIN2 Missense_Mutation p.G336V 0.17 deleterious(0.02) probably_damaging(0.973) TCGA-D7-A4YT-01 10 50948874 50948874 G T OGDHL Missense_Mutation p.H674Q 0.31 deleterious(0) probably_damaging(0.999) TCGA-D7-A4YT-01 10 74885141 74885141 A T NUDT13 Intron 0.64 TCGA-D7-A4YT-01 10 89501024 89501040 TGGAGACCTTCAGGTGC - PAPSS2 Frame_Shift_Del p.D375Efs*6 0.59 TCGA-D7-A4YT-01 11 107578660 107578660 C T SLN 5'UTR 0.36 TCGA-D7-A4YT-01 11 113704991 113704991 C A USP28 Nonsense_Mutation p.E201* 0.49 TCGA-D7-A4YT-01 11 117335803 117335803 C A DSCAML1 Silent p.V1100V 0.49 TCGA-D7-A4YT-01 11 118889967 118889967 G T TRAPPC4 Missense_Mutation p.R97L 0.61 deleterious(0) possibly_damaging(0.765) TCGA-D7-A4YT-01 11 122775027 122775027 C T C11orf63 Missense_Mutation p.R247W 0.07 deleterious(0) probably_damaging(0.999) TCGA-D7-A4YT-01 11 122930073 122930073 T G HSPA8 Intron 0.57 TCGA-D7-A4YT-01 11 126110710 126110710 C G FAM118B Missense_Mutation p.T37S 0.15 tolerated_low_confidence(0.48) benign(0.001) TCGA-D7-A4YT-01 11 134240919 134240919 G A GLB1L2 Silent p.K411K 0.31 TCGA-D7-A4YT-01 11 32124954 32124972 GATCCTCCCTCAAGATTAT - RCN1 Frame_Shift_Del p.L274Mfs*21 0.53 TCGA-D7-A4YT-01 11 4936194 4936194 C T OR51G2 Missense_Mutation p.A234T 0.09 tolerated(0.13) benign(0.125) TCGA-D7-A4YT-01 11 63585493 63585493 C G C11orf84 Missense_Mutation p.P115R 0.39 deleterious(0) probably_damaging(1) TCGA-D7-A4YT-01 11 8009235 8009235 T G EIF3F Silent p.G112G 0.20 TCGA-D7-A4YT-01 11 92085453 92085453 A T FAT3 Missense_Mutation p.R59W 0.44 probably_damaging(1) TCGA-D7-A4YT-01 12 109182012 109182012 T A SSH1 Missense_Mutation p.T968S 0.32 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-D7-A4YT-01 12 110341905 110341905 G A TCHP Missense_Mutation p.E118K 0.55 deleterious(0.04) probably_damaging(0.955) TCGA-D7-A4YT-01 12 110566889 110566889 C G IFT81 Missense_Mutation p.P128R 0.12 deleterious(0) probably_damaging(0.999) TCGA-D7-A4YT-01 12 120586045 120586071 TGGGAGTCGGTCAGCACCTCCGTAAGC - GCN1L1 In_Frame_Del p.K1542_H1551delinsN 0.30 TCGA-D7-A4YT-01 12 49221573 49221573 G C CACNB3 Missense_Mutation p.S449T 0.35 tolerated_low_confidence(0.2) benign(0.007) TCGA-D7-A4YT-01 12 50471146 50471146 G A ASIC1 Missense_Mutation p.D237N 0.34 tolerated(0.48) benign(0.099) TCGA-D7-A4YT-01 12 50560935 50560935 G C CERS5 Missense_Mutation p.S49W 0.44 tolerated(0.15) possibly_damaging(0.504) TCGA-D7-A4YT-01 12 52200766 52200766 G A SCN8A Missense_Mutation p.M1832I 0.50 deleterious(0) probably_damaging(0.972) TCGA-D7-A4YT-01 12 54394041 54394041 C T HOXC9 Silent p.L23L 0.33 TCGA-D7-A4YT-01 12 57828874 57828875 AG - INHBC Frame_Shift_Del p.R69Sfs*28 0.21 TCGA-D7-A4YT-01 12 79693214 79693214 T C SYT1 Silent p.D231D 0.62 TCGA-D7-A4YT-01 12 80214680 80214680 T G PPP1R12A Missense_Mutation p.N330H 0.31 tolerated(0.21) benign(0.002) TCGA-D7-A4YT-01 12 8808404 8808404 T G MFAP5 Silent p.P39P 0.61 TCGA-D7-A4YT-01 13 23912295 23912295 C T SACS Missense_Mutation p.R1907Q 0.35 benign(0.006) TCGA-D7-A4YT-01 13 32913836 32913837 - A BRCA2 Frame_Shift_Ins p.N1784Kfs*3 0.16 TCGA-D7-A4YT-01 13 38154009 38154009 T A POSTN Missense_Mutation p.E550V 0.62 tolerated(0.12) benign(0.297) TCGA-D7-A4YT-01 13 47409208 47409208 A G HTR2A Missense_Mutation p.Y394H 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-D7-A4YT-01 13 78318553 78318553 G T SLAIN1 Missense_Mutation p.R137L 0.27 deleterious(0) unknown(0) TCGA-D7-A4YT-01 13 84454661 84454661 C A SLITRK1 Missense_Mutation p.G328C 0.32 tolerated(0.15) benign(0.007) TCGA-D7-A4YT-01 14 105609319 105609319 G A JAG2 Missense_Mutation p.H1144Y 0.60 deleterious(0.01) benign(0.24) TCGA-D7-A4YT-01 14 20845494 20845494 G T TEP1 Missense_Mutation p.F2011L 0.24 tolerated(0.2) benign(0.005) TCGA-D7-A4YT-01 14 21058905 21058905 T A RNASE12 5'UTR 0.42 TCGA-D7-A4YT-01 14 21623524 21623524 C T OR5AU1 Missense_Mutation p.G221S 0.30 tolerated(0.15) benign(0.202) TCGA-D7-A4YT-01 14 29237814 29237814 G A FOXG1 Silent p.T443T 0.36 TCGA-D7-A4YT-01 14 37754628 37754628 A G MIPOL1 Missense_Mutation p.K200R 0.32 tolerated(0.37) possibly_damaging(0.69) TCGA-D7-A4YT-01 14 38723691 38723691 C - CLEC14A 3'UTR 0.28 TCGA-D7-A4YT-01 14 52471144 52471144 A G C14orf166 Silent p.L215L 0.34 TCGA-D7-A4YT-01 14 58953857 58953857 C T KIAA0586 Missense_Mutation p.P1146S 0.26 tolerated(0.2) benign(0.406) TCGA-D7-A4YT-01 14 64990077 64990077 C T ZBTB1 Missense_Mutation p.R619C 0.28 deleterious(0) probably_damaging(0.982) TCGA-D7-A4YT-01 14 65268106 65268106 G A SPTB Silent p.I220I 0.30 TCGA-D7-A4YT-01 14 74825436 74825436 G T VRTN Missense_Mutation p.K650N 0.42 tolerated(0.65) possibly_damaging(0.621) TCGA-D7-A4YT-01 14 77809767 77809767 T C TMED8 Missense_Mutation p.K172E 0.37 deleterious(0) probably_damaging(0.997) TCGA-D7-A4YT-01 14 77857387 77857387 G A SAMD15 Missense_Mutation p.E609K 0.28 deleterious(0.03) benign(0.196) TCGA-D7-A4YT-01 14 91044497 91044497 C G TTC7B Missense_Mutation p.E755Q 0.55 deleterious(0.04) probably_damaging(0.995) TCGA-D7-A4YT-01 15 102358635 102358635 T C OR4F15 Silent p.I82I 0.70 TCGA-D7-A4YT-01 15 25322132 25322132 G A SNORD116-9 3'Flank 0.45 TCGA-D7-A4YT-01 15 31339349 31339349 G A TRPM1 Missense_Mutation p.R594W 0.42 deleterious(0) probably_damaging(0.997) TCGA-D7-A4YT-01 15 34440952 34440952 C G KATNBL1 Splice_Site p.X147_splice 0.40 TCGA-D7-A4YT-01 15 35082638 35082638 G C ACTC1 Missense_Mutation p.S370C 0.42 deleterious_low_confidence(0.02) possibly_damaging(0.623) TCGA-D7-A4YT-01 15 48797306 48797306 C G FBN1 Missense_Mutation p.G626R 0.32 probably_damaging(0.999) TCGA-D7-A4YT-01 15 57838432 57838432 C T CGNL1 Silent p.D1256D 0.38 TCGA-D7-A4YT-01 15 63040577 63040577 C G TLN2 Silent p.L1351L 0.35 TCGA-D7-A4YT-01 15 63335135 63335135 G A TPM1 Missense_Mutation p.S36N 0.57 tolerated(0.21) possibly_damaging(0.725) TCGA-D7-A4YT-01 15 65792991 65792991 C T DPP8 Missense_Mutation p.G183S 0.30 tolerated(1) possibly_damaging(0.483) TCGA-D7-A4YT-01 15 74180816 74180816 G T TBC1D21 Missense_Mutation p.A314S 0.26 tolerated(0.16) benign(0.003) TCGA-D7-A4YT-01 15 75500588 75500588 G A C15orf39 Silent p.Q733Q 0.27 TCGA-D7-A4YT-01 15 82336071 82336071 G A MEX3B Silent p.F380F 0.31 TCGA-D7-A4YT-01 15 83499525 83499525 A C WHAMM Missense_Mutation p.S606R 0.23 deleterious(0.04) benign(0.064) TCGA-D7-A4YT-01 15 99500476 99500476 C T IGF1R Silent p.V1303V 0.13 TCGA-D7-A4YT-01 16 14960412 14960412 T G NOMO1 Missense_Mutation p.I557R 0.34 deleterious(0) benign(0.282) TCGA-D7-A4YT-01 16 14960427 14960427 A C NOMO1 Missense_Mutation p.E562A 0.31 deleterious(0.02) possibly_damaging(0.783) TCGA-D7-A4YT-01 16 17252692 17252692 T A XYLT1 Missense_Mutation p.N455I 0.35 tolerated(0.05) probably_damaging(0.988) TCGA-D7-A4YT-01 16 30393094 30393094 C G SEPT1 Missense_Mutation p.D103H 0.34 probably_damaging(0.929) TCGA-D7-A4YT-01 16 57505056 57505056 A C POLR2C 3'UTR 0.51 TCGA-D7-A4YT-01 16 57714457 57714457 G A GPR97 Missense_Mutation p.R270H 0.46 tolerated(0.44) benign(0.06) TCGA-D7-A4YT-01 16 841339 841339 G T CHTF18 Missense_Mutation p.G358V 0.43 deleterious(0) benign(0.146) TCGA-D7-A4YT-01 16 84270991 84270991 G A KCNG4 Missense_Mutation p.P34L 0.68 tolerated(0.17) benign(0.084) TCGA-D7-A4YT-01 16 8870335 8870335 G A ABAT Silent p.L419L 0.28 TCGA-D7-A4YT-01 16 9862770 9862770 G C GRIN2A Missense_Mutation p.L845V 0.34 deleterious(0) probably_damaging(0.999) TCGA-D7-A4YT-01 17 17698318 17698318 C G RAI1 Missense_Mutation p.L686V 0.35 tolerated(0.79) benign(0.065) TCGA-D7-A4YT-01 17 2090057 2090057 G A SMG6 Silent p.L1019L 0.45 TCGA-D7-A4YT-01 17 26960977 26960983 AAGCCCC - KIAA0100 Frame_Shift_Del p.L1064Ffs*42 0.25 TCGA-D7-A4YT-01 17 33428247 33428247 C A RAD51L3-RFFL Missense_Mutation p.M133I 0.15 tolerated(0.71) benign(0.002) TCGA-D7-A4YT-01 17 33806402 33806402 G T SLFN12L Missense_Mutation p.T276N 0.18 tolerated(0.64) benign(0.006) TCGA-D7-A4YT-01 17 34313725 34313725 G C CTB-186H2.3 Missense_Mutation p.W57C 0.17 unknown(0) TCGA-D7-A4YT-01 17 39334306 39334306 G T KRTAP4-2 Silent p.R37R 0.13 TCGA-D7-A4YT-01 17 39871710 39871710 G A GAST Missense_Mutation p.V8M 0.18 tolerated_low_confidence(0.41) benign(0.108) TCGA-D7-A4YT-01 17 40169516 40169516 G C NKIRAS2 5'UTR 0.26 TCGA-D7-A4YT-01 17 40269797 40269797 C T KAT2A Missense_Mutation p.E443K 0.19 tolerated(0.18) benign(0.065) TCGA-D7-A4YT-01 17 40966663 40966663 T C BECN1 Missense_Mutation p.N287D 0.50 tolerated(0.09) benign(0.032) TCGA-D7-A4YT-01 17 47041686 47041686 C G GIP Missense_Mutation p.K81N 0.24 deleterious(0) possibly_damaging(0.884) TCGA-D7-A4YT-01 17 48817692 48817692 A G LUC7L3 Silent p.E64E 0.60 TCGA-D7-A4YT-01 17 56440698 56440720 CCATCAGCTTCTCAGCGTCATTA - RNF43 Frame_Shift_Del p.N167Vfs*13 0.59 TCGA-D7-A4YT-01 17 60765989 60765989 C G MRC2 Silent p.P1063P 0.41 TCGA-D7-A4YT-01 17 62049151 62049151 A C SCN4A Missense_Mutation p.F181C 0.46 deleterious(0) possibly_damaging(0.867) TCGA-D7-A4YT-01 17 7468308 7468308 A C SENP3 Missense_Mutation p.S330R 0.42 deleterious(0.01) probably_damaging(0.991) TCGA-D7-A4YT-01 17 77077146 77077146 A T ENGASE Missense_Mutation p.Q288L 0.78 deleterious(0.01) benign(0.014) TCGA-D7-A4YT-01 17 80016246 80016246 C T DUS1L Missense_Mutation p.R418Q 0.04 deleterious(0.05) benign(0.006) TCGA-D7-A4YT-01 17 80019827 80019827 C T DUS1L Silent p.Q181Q 0.78 TCGA-D7-A4YT-01 17 80320543 80320543 C G TEX19 3'UTR 0.59 TCGA-D7-A4YT-01 18 21736628 21736628 C G CABYR Intron 0.36 TCGA-D7-A4YT-01 18 60646462 60646462 A G PHLPP1 Missense_Mutation p.Y1651C 0.58 deleterious(0) probably_damaging(0.999) TCGA-D7-A4YT-01 18 74962768 74962768 C T GALR1 Silent p.C88C 0.32 TCGA-D7-A4YT-01 19 1109765 1109765 C T SBNO2 Missense_Mutation p.G1014S 0.13 tolerated(0.07) possibly_damaging(0.577) TCGA-D7-A4YT-01 19 11687884 11687884 G A ACP5 Silent p.D83D 0.37 TCGA-D7-A4YT-01 19 1219322 1219322 C G STK11 Splice_Site p.X125_splice 0.33 TCGA-D7-A4YT-01 19 12384018 12384024 GAACCAG - ZNF44 Frame_Shift_Del p.P397Qfs*11 0.36 TCGA-D7-A4YT-01 19 12996891 12996891 G T KLF1 Silent p.L51L 0.33 TCGA-D7-A4YT-01 19 18311163 18311163 C T RAB3A Silent p.E107E 0.46 TCGA-D7-A4YT-01 19 3547943 3547943 G T MFSD12 Missense_Mutation p.A247E 0.14 benign(0.01) TCGA-D7-A4YT-01 19 35510135 35510135 C G GRAMD1A Missense_Mutation p.H418Q 0.40 deleterious(0.02) benign(0.028) TCGA-D7-A4YT-01 19 36273737 36273737 A C ARHGAP33 Missense_Mutation p.N463H 0.22 deleterious_low_confidence(0) probably_damaging(0.945) TCGA-D7-A4YT-01 19 39207941 39207941 G A ACTN4 Silent p.E376E 0.50 TCGA-D7-A4YT-01 19 41009957 41009957 G A SPTBN4 Missense_Mutation p.R528Q 0.12 tolerated(0.05) probably_damaging(0.978) TCGA-D7-A4YT-01 19 41115559 41115559 G C LTBP4 Missense_Mutation p.R584P 0.40 tolerated(0.12) possibly_damaging(0.53) TCGA-D7-A4YT-01 19 42510076 42510076 G A GRIK5 Missense_Mutation p.R688C 0.38 deleterious(0) probably_damaging(0.999) TCGA-D7-A4YT-01 19 42736796 42736796 G A GSK3A Silent p.L379L 0.29 TCGA-D7-A4YT-01 19 44223739 44223739 C G IRGC Silent p.V343V 0.30 TCGA-D7-A4YT-01 19 44514462 44514462 C A ZNF230 Missense_Mutation p.P91T 0.25 deleterious(0.03) benign(0) TCGA-D7-A4YT-01 19 44778486 44778486 A G ZNF233 Missense_Mutation p.H558R 0.39 deleterious(0) possibly_damaging(0.846) TCGA-D7-A4YT-01 19 45574995 45574995 C T ZNF296 Missense_Mutation p.R431H 0.34 deleterious(0) probably_damaging(0.994) TCGA-D7-A4YT-01 19 46002514 46002514 C A PPM1N Missense_Mutation p.R262S 0.10 deleterious(0) probably_damaging(0.989) TCGA-D7-A4YT-01 19 47774720 47774720 C T CCDC9 Missense_Mutation p.P461S 0.10 deleterious(0.04) unknown(0) TCGA-D7-A4YT-01 19 48244185 48244185 G A EHD2 Silent p.P376P 0.31 TCGA-D7-A4YT-01 19 52149659 52149659 C T SIGLEC14 Missense_Mutation p.R91H 0.28 tolerated(1) benign(0.003) TCGA-D7-A4YT-01 19 5218806 5218806 T G PTPRS Missense_Mutation p.K1309N 0.25 deleterious(0) benign(0.075) TCGA-D7-A4YT-01 19 53741187 53741187 A G ZNF677 Missense_Mutation p.C265R 0.30 deleterious(0.02) benign(0.013) TCGA-D7-A4YT-01 19 54409676 54409676 C T PRKCG Nonsense_Mutation p.R624* 0.45 TCGA-D7-A4YT-01 19 55889085 55889085 C G TMEM190 Missense_Mutation p.D73E 0.40 tolerated(0.06) possibly_damaging(0.753) TCGA-D7-A4YT-01 19 56388502 56388502 C T NLRP4 Missense_Mutation p.T889M 0.33 tolerated(0.1) benign(0.011) TCGA-D7-A4YT-01 19 58189625 58189625 C T ZSCAN4 Silent p.S218S 0.36 TCGA-D7-A4YT-01 19 6444244 6444244 C T SLC25A23 Silent p.L380L 0.24 TCGA-D7-A4YT-01 19 7523439 7523439 G T ARHGEF18 Silent p.V553V 0.43 TCGA-D7-A4YT-01 19 7711164 7711164 G A STXBP2 Silent p.P462P 0.47 TCGA-D7-A4YT-01 19 7741943 7741943 T C C19orf59 5'UTR 0.75 TCGA-D7-A4YT-01 1 109395133 109395133 C G AKNAD1 Missense_Mutation p.D52H 0.35 deleterious(0.05) probably_damaging(0.979) TCGA-D7-A4YT-01 1 11008300 11008300 C G C1orf127 Missense_Mutation p.G631A 0.34 tolerated(0.09) probably_damaging(0.934) TCGA-D7-A4YT-01 1 114442411 114442411 T C AP4B1 Intron 0.26 TCGA-D7-A4YT-01 1 114641809 114641809 A C SYT6 Missense_Mutation p.L339R 0.33 deleterious(0) probably_damaging(1) TCGA-D7-A4YT-01 1 11721234 11721234 G A FBXO44 Nonsense_Mutation p.W224* 0.73 TCGA-D7-A4YT-01 1 1341166 1341166 G A MRPL20 Intron 0.42 TCGA-D7-A4YT-01 1 150238630 150238630 T G APH1A Intron 0.21 TCGA-D7-A4YT-01 1 151006687 151006687 A C PRUNE Missense_Mutation p.T447P 0.26 tolerated(0.13) benign(0.003) TCGA-D7-A4YT-01 1 151026763 151026763 C A CDC42SE1 Missense_Mutation p.G67V 0.20 deleterious(0) possibly_damaging(0.658) TCGA-D7-A4YT-01 1 151314602 151314602 A T RFX5 3'UTR 0.28 TCGA-D7-A4YT-01 1 151314729 151314729 A T RFX5 Nonsense_Mutation p.L595* 0.59 TCGA-D7-A4YT-01 1 151634671 151634671 G C SNX27 Silent p.L277L 0.23 TCGA-D7-A4YT-01 1 152059360 152059360 T C TCHHL1 Silent p.K266K 0.29 TCGA-D7-A4YT-01 1 152086500 152086500 G A TCHH Silent p.V19V 0.23 TCGA-D7-A4YT-01 1 152187700 152187700 T C HRNR Silent p.Q2135Q 0.04 TCGA-D7-A4YT-01 1 152733487 152733487 C T KPRP Nonsense_Mutation p.R475* 0.48 TCGA-D7-A4YT-01 1 155297948 155297948 T C RUSC1 Missense_Mutation p.S808P 0.06 deleterious(0.01) probably_damaging(0.998) TCGA-D7-A4YT-01 1 158390537 158390537 G T OR10K2 Silent p.G40G 0.55 TCGA-D7-A4YT-01 1 158669861 158669861 G A OR6K2 Silent p.I194I 0.30 TCGA-D7-A4YT-01 1 158813857 158813857 A T MNDA Missense_Mutation p.H172L 0.27 tolerated(0.3) benign(0.138) TCGA-D7-A4YT-01 1 160786398 160786398 C G LY9 Missense_Mutation p.P363A 0.43 deleterious(0.02) probably_damaging(0.942) TCGA-D7-A4YT-01 1 163044202 163044202 T C RGS4 Missense_Mutation p.F254S 0.26 deleterious(0.01) probably_damaging(0.984) TCGA-D7-A4YT-01 1 164815989 164815989 C T PBX1 3'UTR 0.36 TCGA-D7-A4YT-01 1 166818400 166818400 G T POGK Missense_Mutation p.G195V 0.19 deleterious(0.01) possibly_damaging(0.839) TCGA-D7-A4YT-01 1 16775642 16775642 C A NECAP2 Silent p.G145G 0.61 TCGA-D7-A4YT-01 1 169559386 169559386 T G SELP Nonstop_Mutation p.*831Yext*7 0.26 TCGA-D7-A4YT-01 1 169559420 169559420 A C SELP Missense_Mutation p.V820G 0.26 deleterious(0) probably_damaging(0.989) TCGA-D7-A4YT-01 1 1696699 1696699 G C NADK Silent p.A49A 0.23 TCGA-D7-A4YT-01 1 171484978 171484978 G A PRRC2C Missense_Mutation p.G167E 0.27 unknown(0) TCGA-D7-A4YT-01 1 201081537 201081537 G T CACNA1S 5'UTR 0.22 TCGA-D7-A4YT-01 1 202287851 202287851 C A LGR6 Missense_Mutation p.A807D 0.37 deleterious(0) probably_damaging(0.968) TCGA-D7-A4YT-01 1 20249208 20249208 C A PLA2G2E Missense_Mutation p.M27I 0.30 deleterious(0.04) probably_damaging(0.914) TCGA-D7-A4YT-01 1 205041208 205041208 G C CNTN2 Missense_Mutation p.R893P 0.04 tolerated(0.06) probably_damaging(0.969) TCGA-D7-A4YT-01 1 205156872 205156872 A C DSTYK Missense_Mutation p.C110G 0.10 tolerated(0.5) benign(0.001) TCGA-D7-A4YT-01 1 206154011 206154024 AAGATGTGTTAAAT - FAM72A Frame_Shift_Del p.E137Dfs*8 0.13 TCGA-D7-A4YT-01 1 20964478 20964478 A G PINK1 Silent p.T177T 0.33 TCGA-D7-A4YT-01 1 212238293 212238293 A G DTL Silent p.G187G 0.33 TCGA-D7-A4YT-01 1 227174341 227174341 C G ADCK3 Missense_Mutation p.S616C 0.06 tolerated(0.11) benign(0.042) TCGA-D7-A4YT-01 1 228487034 228487034 G A OBSCN Missense_Mutation p.E4429K 0.16 possibly_damaging(0.9) TCGA-D7-A4YT-01 1 233136182 233136182 G T PCNXL2 Missense_Mutation p.P1733T 0.31 deleterious(0.01) probably_damaging(0.975) TCGA-D7-A4YT-01 1 237026804 237026804 C T MTR Silent p.H785H 0.39 TCGA-D7-A4YT-01 1 24447294 24447294 C G IL22RA1 3'UTR 0.22 TCGA-D7-A4YT-01 1 244541857 244541857 C A C1orf100 Missense_Mutation p.L81I 0.42 deleterious(0.01) benign(0.005) TCGA-D7-A4YT-01 1 246754949 246754949 G A CNST Missense_Mutation p.V29M 0.31 tolerated(0.07) possibly_damaging(0.704) TCGA-D7-A4YT-01 1 247599290 247599290 C A NLRP3 Silent p.L839L 0.40 TCGA-D7-A4YT-01 1 27100321 27100321 A T ARID1A Missense_Mutation p.T1345S 0.23 unknown(0) TCGA-D7-A4YT-01 1 31214496 31214496 G A LAPTM5 Silent p.G83G 0.50 TCGA-D7-A4YT-01 1 34238273 34238273 G A CSMD2 Silent p.D541D 0.79 TCGA-D7-A4YT-01 1 36938265 36938265 C T CSF3R Silent p.L232L 0.19 TCGA-D7-A4YT-01 1 38197083 38197083 C T EPHA10 Missense_Mutation p.A555T 0.63 tolerated(0.45) benign(0.014) TCGA-D7-A4YT-01 1 39801326 39801342 AAGTGAAAAAGGGAAAG - MACF1 Intron 0.14 TCGA-D7-A4YT-01 1 40768858 40768858 C G COL9A2 Splice_Site p.X517_splice 0.18 TCGA-D7-A4YT-01 1 40770188 40770188 T C COL9A2 Missense_Mutation p.E392G 0.19 deleterious(0.01) possibly_damaging(0.728) TCGA-D7-A4YT-01 1 52499468 52499468 G A TXNDC12 Intron 0.25 TCGA-D7-A4YT-01 1 60456444 60456444 C T C1orf87 Silent p.L514L 0.58 TCGA-D7-A4YT-01 1 65858259 65858259 C A DNAJC6 Silent p.P538P 0.71 TCGA-D7-A4YT-01 20 13763319 13763319 C A ESF1 Missense_Mutation p.K156N 0.33 tolerated_low_confidence(0.06) probably_damaging(0.994) TCGA-D7-A4YT-01 20 2384321 2384321 C T TGM6 Silent p.N396N 0.06 TCGA-D7-A4YT-01 20 3211489 3211489 C T SLC4A11 Missense_Mutation p.V434M 0.43 deleterious(0) probably_damaging(0.987) TCGA-D7-A4YT-01 20 32224501 32224501 T C CBFA2T2 Silent p.F437F 0.39 TCGA-D7-A4YT-01 20 37174983 37174983 C A RALGAPB Missense_Mutation p.P938T 0.36 tolerated(0.2) benign(0.01) TCGA-D7-A4YT-01 20 40790084 40790084 G T PTPRT Missense_Mutation p.Q864K 0.18 deleterious(0) benign(0.15) TCGA-D7-A4YT-01 20 52774059 52774059 C T CYP24A1 Silent p.Q434Q 0.25 TCGA-D7-A4YT-01 20 62724306 62724306 G T OPRL1 Missense_Mutation p.R78M 0.72 deleterious(0) probably_damaging(0.998) TCGA-D7-A4YT-01 21 10863003 10863003 T C IGHV1OR21-1 Missense_Mutation p.M100T 0.13 deleterious(0.03) benign(0.433) TCGA-D7-A4YT-01 21 37617880 37617880 A T DOPEY2 Missense_Mutation p.E1201V 0.71 deleterious(0) probably_damaging(0.917) TCGA-D7-A4YT-01 21 43916250 43916257 TCATTCTC - RSPH1 Frame_Shift_Del p.E14Yfs*5 0.56 TCGA-D7-A4YT-01 21 47786946 47786946 G A PCNT Silent p.L1019L 0.59 TCGA-D7-A4YT-01 22 16448951 16448952 - T OR11H1 Frame_Shift_Ins p.M285Nfs*5 0.22 TCGA-D7-A4YT-01 22 16449739 16449739 A T OR11H1 Silent p.A22A 0.29 TCGA-D7-A4YT-01 22 17577950 17577950 A T IL17RA Splice_Site p.X47_splice 0.36 TCGA-D7-A4YT-01 22 21333869 21333869 T A AIFM3 Intron 0.28 TCGA-D7-A4YT-01 22 36123193 36123193 A G APOL5 Missense_Mutation p.S360G 0.39 deleterious_low_confidence(0.02) benign(0.153) TCGA-D7-A4YT-01 22 37690712 37690712 T A CYTH4 Missense_Mutation p.D38E 0.46 tolerated(0.46) benign(0) TCGA-D7-A4YT-01 22 38322052 38322052 T C MICALL1 Splice_Site p.X489_splice 0.25 TCGA-D7-A4YT-01 22 44221877 44221877 G A SULT4A1 3'UTR 0.32 TCGA-D7-A4YT-01 22 45312274 45312274 G A PHF21B Silent p.Y150Y 0.42 TCGA-D7-A4YT-01 2 102476248 102476248 G A MAP4K4 Silent p.P542P 0.42 TCGA-D7-A4YT-01 2 102959963 102959963 G C IL1RL1 Intron 0.44 TCGA-D7-A4YT-01 2 130897829 130897829 G A CCDC74B Nonsense_Mutation p.R267* 0.40 TCGA-D7-A4YT-01 2 136566925 136566925 C A LCT Missense_Mutation p.D998Y 0.38 deleterious(0) probably_damaging(0.972) TCGA-D7-A4YT-01 2 155566194 155566194 A C KCNJ3 Missense_Mutation p.Q261P 0.42 deleterious(0) probably_damaging(0.994) TCGA-D7-A4YT-01 2 166026964 166026964 A C SCN3A Missense_Mutation p.I120S 0.31 tolerated(0.1) benign(0.069) TCGA-D7-A4YT-01 2 169763222 169763222 T A G6PC2 Missense_Mutation p.S163R 0.34 tolerated(0.26) possibly_damaging(0.529) TCGA-D7-A4YT-01 2 177036786 177036786 C T HOXD3 Silent p.N361N 0.29 TCGA-D7-A4YT-01 2 179470142 179470142 T A TTN Missense_Mutation p.E17960D 0.38 TCGA-D7-A4YT-01 2 179631273 179631273 A G TTN Missense_Mutation p.Y3180H 0.06 TCGA-D7-A4YT-01 2 179635333 179635333 T G TTN Missense_Mutation p.E2729A 0.36 TCGA-D7-A4YT-01 2 188343424 188343454 ATCCAATCCTAGAAAGAACATGGATGCATGA - TFPI Intron 0.27 TCGA-D7-A4YT-01 2 1926074 1926075 - T MYT1L Frame_Shift_Ins p.P490Afs*4 0.45 TCGA-D7-A4YT-01 2 210641998 210641998 G T UNC80 Missense_Mutation p.L105F 0.24 probably_damaging(0.962) TCGA-D7-A4YT-01 2 211319933 211319933 C T LANCL1 Missense_Mutation p.R102H 0.29 tolerated(0.1) benign(0.003) TCGA-D7-A4YT-01 2 220353257 220353257 C A SPEG Silent p.I2632I 0.38 TCGA-D7-A4YT-01 2 233599885 233599885 C G GIGYF2 5'UTR 0.55 TCGA-D7-A4YT-01 2 234627873 234627873 C T UGT1A4 Missense_Mutation p.A136V 0.35 tolerated(0.05) benign(0.027) TCGA-D7-A4YT-01 2 237247012 237247012 C T IQCA1 Missense_Mutation p.R657H 0.41 deleterious(0.02) possibly_damaging(0.839) TCGA-D7-A4YT-01 2 239344628 239344628 G T ASB1 Silent p.R156R 0.57 TCGA-D7-A4YT-01 2 242186471 242186472 - T HDLBP Frame_Shift_Ins p.I607Dfs*3 0.24 TCGA-D7-A4YT-01 2 26699838 26699838 G A OTOF Missense_Mutation p.P866L 0.55 deleterious(0.02) probably_damaging(0.969) TCGA-D7-A4YT-01 2 48035080 48035080 C T FBXO11 3'UTR 0.57 TCGA-D7-A4YT-01 2 61310371 61310371 A C KIAA1841 Missense_Mutation p.N271T 0.19 tolerated(0.14) possibly_damaging(0.738) TCGA-D7-A4YT-01 2 64144060 64144060 G A VPS54 Silent p.V734V 0.26 TCGA-D7-A4YT-01 2 71653954 71653954 A T ZNF638 Missense_Mutation p.D1652V 0.26 deleterious(0) possibly_damaging(0.851) TCGA-D7-A4YT-01 2 71747335 71747335 C A DYSF Missense_Mutation p.P344T 0.23 deleterious(0.03) benign(0.109) TCGA-D7-A4YT-01 2 71883377 71883377 C T DYSF Missense_Mutation p.T1571M 0.22 deleterious(0.03) probably_damaging(0.925) TCGA-D7-A4YT-01 2 73784420 73784420 A C ALMS1 Silent p.T3383T 0.30 TCGA-D7-A4YT-01 2 85536584 85536584 A G TCF7L1 Silent p.%3D 0.36 TCGA-D7-A4YT-01 2 96789646 96789646 T C ASTL Silent p.P413P 0.40 TCGA-D7-A4YT-01 3 100362456 100362456 G A GPR128 Missense_Mutation p.V309I 0.40 tolerated(1) benign(0.003) TCGA-D7-A4YT-01 3 119133205 119133205 C G ARHGAP31 Missense_Mutation p.S810C 0.31 tolerated(0.14) benign(0.004) TCGA-D7-A4YT-01 3 130279257 130279257 G C COL6A6 Missense_Mutation p.V17L 0.31 tolerated(0.17) benign(0.001) TCGA-D7-A4YT-01 3 138248274 138248274 T G CEP70 Missense_Mutation p.E241D 0.41 tolerated(0.12) possibly_damaging(0.561) TCGA-D7-A4YT-01 3 138665218 138665218 G T FOXL2 Missense_Mutation p.P116Q 0.39 deleterious(0) probably_damaging(0.968) TCGA-D7-A4YT-01 3 142188342 142188342 G C ATR Missense_Mutation p.T2130R 0.39 tolerated(0.05) possibly_damaging(0.489) TCGA-D7-A4YT-01 3 14545116 14545116 G A GRIP2 RNA 0.33 TCGA-D7-A4YT-01 3 151463297 151463297 C A AADACL2 Missense_Mutation p.D144E 0.30 tolerated(0.52) possibly_damaging(0.724) TCGA-D7-A4YT-01 3 159614509 159614509 C G IQCJ-SCHIP1 Intron 0.19 TCGA-D7-A4YT-01 3 179459996 179459996 C T USP13 Silent p.I464I 0.38 TCGA-D7-A4YT-01 3 184573502 184573502 G T VPS8 Missense_Mutation p.D347Y 0.46 deleterious(0) possibly_damaging(0.778) TCGA-D7-A4YT-01 3 193031864 193031864 G A ATP13A5 Silent p.T759T 0.42 TCGA-D7-A4YT-01 3 193120419 193120419 C T ATP13A4 3'UTR 0.31 TCGA-D7-A4YT-01 3 195594114 195594114 C T TNK2 Intron 0.11 TCGA-D7-A4YT-01 3 30713543 30713543 G A TGFBR2 Missense_Mutation p.E315K 0.60 deleterious(0) probably_damaging(0.999) TCGA-D7-A4YT-01 3 50148182 50148182 C G RBM5 Silent p.L478L 0.08 TCGA-D7-A4YT-01 3 63968005 63968005 C A ATXN7 Missense_Mutation p.T299N 0.38 tolerated(0.32) benign(0.011) TCGA-D7-A4YT-01 3 8590314 8590314 G A LMCD1 Missense_Mutation p.A150T 0.26 deleterious(0.04) probably_damaging(0.989) TCGA-D7-A4YT-01 3 9859368 9859368 G C TTLL3 Missense_Mutation p.D262H 0.36 tolerated(0.07) benign(0.373) TCGA-D7-A4YT-01 3 9948410 9948410 T A IL17RE Silent p.R129R 0.37 TCGA-D7-A4YT-01 4 122053661 122053661 C A TNIP3 3'UTR 0.62 TCGA-D7-A4YT-01 4 123336756 123336756 G T ADAD1 Missense_Mutation p.G491V 0.33 deleterious(0) probably_damaging(0.981) TCGA-D7-A4YT-01 4 126237620 126237629 TCTATCAGTA - FAT4 Frame_Shift_Del p.V21Sfs*38 0.12 TCGA-D7-A4YT-01 4 128632186 128632186 C T INTU Nonsense_Mutation p.Q830* 0.44 TCGA-D7-A4YT-01 4 128725170 128725170 C G HSPA4L Missense_Mutation p.Q305E 0.33 tolerated(0.26) benign(0.017) TCGA-D7-A4YT-01 4 13606144 13606144 T A BOD1L1 Missense_Mutation p.R794W 0.33 probably_damaging(0.992) TCGA-D7-A4YT-01 4 143191883 143191883 A G INPP4B Missense_Mutation p.V183A 0.57 tolerated(0.52) benign(0.002) TCGA-D7-A4YT-01 4 47427764 47427764 C G GABRB1 Missense_Mutation p.T385R 0.29 tolerated(0.56) benign(0.015) TCGA-D7-A4YT-01 4 67142636 67142636 T C MIR1269A RNA 0.28 TCGA-D7-A4YT-01 4 70346533 70346533 C T UGT2B4 Missense_Mutation p.R469H 0.34 deleterious(0.04) benign(0.159) TCGA-D7-A4YT-01 4 70596360 70596360 C T SULT1B1 Missense_Mutation p.E213K 0.43 deleterious(0.04) benign(0.118) TCGA-D7-A4YT-01 4 86491782 86491782 G T ARHGAP24 Nonsense_Mutation p.G30* 0.15 TCGA-D7-A4YT-01 4 89385112 89385112 G A HERC5 Missense_Mutation p.R296K 0.40 tolerated(0.47) probably_damaging(0.997) TCGA-D7-A4YT-01 5 100191819 100191819 T G ST8SIA4 Missense_Mutation p.H262P 0.07 benign(0.013) TCGA-D7-A4YT-01 5 108521949 108521949 G C FER Missense_Mutation p.W751S 0.63 deleterious(0) probably_damaging(1) TCGA-D7-A4YT-01 5 131607543 131607543 G C PDLIM4 Missense_Mutation p.A244P 0.43 tolerated(0.22) benign(0.379) TCGA-D7-A4YT-01 5 138269667 138269667 G A CTNNA1 Silent p.V870V 0.27 TCGA-D7-A4YT-01 5 138269676 138269676 G C CTNNA1 Missense_Mutation p.E873D 0.32 tolerated(0.06) possibly_damaging(0.889) TCGA-D7-A4YT-01 5 140719889 140719889 G A PCDHGA2 Missense_Mutation p.A451T 0.43 tolerated_low_confidence(0.9) benign(0.028) TCGA-D7-A4YT-01 5 145439568 145439568 C T SH3RF2 Silent p.A565A 0.28 TCGA-D7-A4YT-01 5 148885058 148885058 G C CSNK1A1 Missense_Mutation p.Q348E 0.38 tolerated_low_confidence(0.64) probably_damaging(0.977) TCGA-D7-A4YT-01 5 162880981 162880981 C G NUDCD2 Missense_Mutation p.E156Q 0.30 tolerated_low_confidence(0.24) benign(0.003) TCGA-D7-A4YT-01 5 176306895 176306895 C A UNC5A 3'UTR 0.80 TCGA-D7-A4YT-01 5 177022391 177022391 T G TMED9 Missense_Mutation p.F228V 0.39 deleterious(0.01) probably_damaging(1) TCGA-D7-A4YT-01 5 19721493 19721493 G A CDH18 Silent p.L202L 0.41 TCGA-D7-A4YT-01 5 32135789 32135789 T C GOLPH3 Missense_Mutation p.I121V 0.44 tolerated(0.52) benign(0.003) TCGA-D7-A4YT-01 5 35086401 35086401 A G PRLR Missense_Mutation p.S38P 0.41 deleterious(0) probably_damaging(0.992) TCGA-D7-A4YT-01 5 41033142 41033143 - CAAT MROH2B Frame_Shift_Ins p.D788Ifs*5 0.35 TCGA-D7-A4YT-01 5 41203351 41203351 C T C6 Intron 0.42 TCGA-D7-A4YT-01 5 50687164 50687164 C A ISL1 Missense_Mutation p.D274E 0.12 tolerated(0.69) benign(0.02) TCGA-D7-A4YT-01 5 55395932 55395932 T A ANKRD55 3'UTR 0.37 TCGA-D7-A4YT-01 5 64946672 64946672 G C TRAPPC13 Missense_Mutation p.G155A 0.09 deleterious(0.01) possibly_damaging(0.69) TCGA-D7-A4YT-01 6 118556701 118556701 C T SLC35F1 Nonsense_Mutation p.R127* 0.26 TCGA-D7-A4YT-01 6 130465893 130465893 G C SAMD3 Missense_Mutation p.C445W 0.11 deleterious(0) probably_damaging(0.924) TCGA-D7-A4YT-01 6 138192409 138192409 G T TNFAIP3 Missense_Mutation p.M15I 0.19 deleterious(0.02) benign(0.239) TCGA-D7-A4YT-01 6 144749929 144749929 C A UTRN Missense_Mutation p.S198R 0.21 deleterious(0.01) benign(0.363) TCGA-D7-A4YT-01 6 144749936 144749936 A G UTRN Missense_Mutation p.K201E 0.18 tolerated(0.17) benign(0.002) TCGA-D7-A4YT-01 6 151670624 151670624 C T AKAP12 Silent p.H366H 0.31 TCGA-D7-A4YT-01 6 160328818 160328818 T A MAS1 Silent p.P277P 0.36 TCGA-D7-A4YT-01 6 16326666 16326666 C T ATXN1 Missense_Mutation p.V626M 0.27 tolerated(0.24) benign(0.395) TCGA-D7-A4YT-01 6 166580155 166580155 G T T Missense_Mutation p.F132L 0.32 deleterious(0) benign(0.322) TCGA-D7-A4YT-01 6 17675805 17675822 ATCATGCTGAGAGGTAGA - NUP153 In_Frame_Del p.S172_D177del 0.42 TCGA-D7-A4YT-01 6 24146300 24146300 A C NRSN1 3'UTR 0.30 TCGA-D7-A4YT-01 6 28543077 28543077 T A SCAND3 Missense_Mutation p.S469C 0.23 deleterious_low_confidence(0.03) possibly_damaging(0.498) TCGA-D7-A4YT-01 6 30554043 30554043 G C ABCF1 Missense_Mutation p.D616H 0.20 deleterious(0.01) benign(0.322) TCGA-D7-A4YT-01 6 31686911 31686912 - A LY6G6C Frame_Shift_Ins p.T114Yfs*53 0.11 TCGA-D7-A4YT-01 6 31938570 31938570 C T DXO Missense_Mutation p.E209K 0.22 tolerated(0.28) benign(0.021) TCGA-D7-A4YT-01 6 36181868 36181868 G C BRPF3 Missense_Mutation p.L898F 0.27 tolerated(0.22) possibly_damaging(0.815) TCGA-D7-A4YT-01 6 36882162 36882162 T A C6orf89 Missense_Mutation p.L176Q 0.12 deleterious(0.04) possibly_damaging(0.812) TCGA-D7-A4YT-01 6 37336407 37336407 G C RNF8 Missense_Mutation p.E130Q 0.22 deleterious(0.02) possibly_damaging(0.552) TCGA-D7-A4YT-01 6 42141310 42141310 G C GUCA1A 5'UTR 0.25 TCGA-D7-A4YT-01 6 42141311 42141311 G T GUCA1A 5'UTR 0.24 TCGA-D7-A4YT-01 6 43970920 43970920 G T C6orf223 3'UTR 0.62 TCGA-D7-A4YT-01 6 47575752 47575752 C G CD2AP Missense_Mutation p.C540W 0.38 tolerated(0.08) benign(0.325) TCGA-D7-A4YT-01 6 52869936 52869936 A C ICK 3'UTR 0.38 TCGA-D7-A4YT-01 6 90333683 90333683 C T ANKRD6 Silent p.N375N 0.31 TCGA-D7-A4YT-01 7 136939673 136939673 G T PTN Silent p.A16A 0.39 TCGA-D7-A4YT-01 7 141673474 141673474 G C TAS2R38 Missense_Mutation p.R6G 0.33 deleterious_low_confidence(0.02) benign(0.005) TCGA-D7-A4YT-01 7 150068727 150068727 C T REPIN1 Silent p.L190L 0.65 TCGA-D7-A4YT-01 7 150690874 150690874 G T NOS3 5'UTR 0.32 TCGA-D7-A4YT-01 7 151711795 151711795 C A GALNTL5 Missense_Mutation p.Q365K 0.28 deleterious(0.01) benign(0.05) TCGA-D7-A4YT-01 7 151845953 151845953 T G KMT2C Missense_Mutation p.R4353S 0.24 benign(0.284) TCGA-D7-A4YT-01 7 157369463 157369463 C A PTPRN2 Silent p.L875L 0.27 TCGA-D7-A4YT-01 7 21941787 21941787 G A CDCA7L 3'UTR 0.42 TCGA-D7-A4YT-01 7 23309691 23309691 G C GPNMB Silent p.V454V 0.26 TCGA-D7-A4YT-01 7 30491602 30491602 G C NOD1 Silent p.V477V 0.34 TCGA-D7-A4YT-01 7 37947099 37947099 T C SFRP4 Silent p.T341T 0.40 TCGA-D7-A4YT-01 7 41729775 41729775 C T INHBA Missense_Mutation p.A252T 0.38 deleterious(0.01) probably_damaging(0.956) TCGA-D7-A4YT-01 7 43548495 43548495 G C HECW1 Intron 0.39 TCGA-D7-A4YT-01 7 70227930 70227930 G T AUTS2 Missense_Mutation p.G273C 0.32 deleterious(0.01) probably_damaging(1) TCGA-D7-A4YT-01 7 70228154 70228154 G T AUTS2 Missense_Mutation p.E347D 0.52 tolerated(0.53) benign(0.288) TCGA-D7-A4YT-01 7 87436707 87436707 G A RUNDC3B Missense_Mutation p.D343N 0.31 tolerated(0.12) benign(0.225) TCGA-D7-A4YT-01 7 91752481 91752481 G A CYP51A1 Nonsense_Mutation p.Q347* 0.25 TCGA-D7-A4YT-01 7 97863002 97863002 C G TECPR1 Missense_Mutation p.R468T 0.13 tolerated(0.55) benign(0.001) TCGA-D7-A4YT-01 7 99753485 99753485 G C C7orf43 Intron 0.29 TCGA-D7-A4YT-01 7 99757827 99757827 C T GAL3ST4 Silent p.E395E 0.05 TCGA-D7-A4YT-01 8 116616365 116616373 AGAGTGCAC - TRPS1 In_Frame_Del p.C608_L610del 0.47 TCGA-D7-A4YT-01 8 12040041 12040041 C G FAM86B1 3'UTR 0.21 TCGA-D7-A4YT-01 8 12043996 12043996 G C FAM86B1 Missense_Mutation p.L169V 0.08 deleterious(0.02) probably_damaging(0.93) TCGA-D7-A4YT-01 8 123966231 123966231 C T ZHX2 Silent p.S827S 0.34 TCGA-D7-A4YT-01 8 124219604 124219604 T G FAM83A Missense_Mutation p.S327R 0.06 deleterious(0.01) possibly_damaging(0.851) TCGA-D7-A4YT-01 8 124359446 124359446 C T ATAD2 Missense_Mutation p.A700T 0.23 deleterious(0) possibly_damaging(0.627) TCGA-D7-A4YT-01 8 125740259 125740259 G T MTSS1 5'UTR 0.20 TCGA-D7-A4YT-01 8 133980211 133980211 G T TG Missense_Mutation p.K1953N 0.12 deleterious(0) probably_damaging(0.92) TCGA-D7-A4YT-01 8 144620387 144620387 G A ZC3H3 Missense_Mutation p.P384S 0.24 tolerated(0.21) benign(0.259) TCGA-D7-A4YT-01 8 42202482 42202482 C G POLB Missense_Mutation p.S44C 0.39 deleterious(0.01) possibly_damaging(0.53) TCGA-D7-A4YT-01 8 53062442 53062442 G T ST18 Missense_Mutation p.N634K 0.12 tolerated(0.77) benign(0.014) TCGA-D7-A4YT-01 8 67342340 67342340 G C RRS1 Missense_Mutation p.G325A 0.40 tolerated(0.11) unknown(0) TCGA-D7-A4YT-01 8 99761538 99761538 G A STK3 Missense_Mutation p.S134F 0.30 deleterious(0) probably_damaging(1) TCGA-D7-A4YT-01 9 104433073 104433073 G T GRIN3A Missense_Mutation p.Q541K 0.56 tolerated(0.08) probably_damaging(0.964) TCGA-D7-A4YT-01 9 114348359 114348359 C G PTGR1 Missense_Mutation p.G99A 0.27 tolerated(0.12) benign(0.093) TCGA-D7-A4YT-01 9 123620386 123620386 C T PHF19 Missense_Mutation p.E527K 0.38 tolerated(0.07) benign(0.009) TCGA-D7-A4YT-01 9 123620439 123620439 A T PHF19 Missense_Mutation p.V509D 0.40 tolerated(0.62) benign(0) TCGA-D7-A4YT-01 9 126794769 126794769 A T LHX2 Missense_Mutation p.K335M 0.75 tolerated(0.05) probably_damaging(0.993) TCGA-D7-A4YT-01 9 128246724 128246724 A G MAPKAP1 Missense_Mutation p.L402P 0.44 deleterious(0) probably_damaging(1) TCGA-D7-A4YT-01 9 131186865 131186865 C A CERCAM Silent p.I246I 0.39 TCGA-D7-A4YT-01 9 132597529 132597529 C T C9orf78 5'UTR 0.51 TCGA-D7-A4YT-01 9 135932246 135932246 G A GTF3C5 Silent p.R455R 0.08 TCGA-D7-A4YT-01 9 137778399 137778399 A T FCN2 Missense_Mutation p.E228V 0.15 deleterious(0.01) benign(0.196) TCGA-D7-A4YT-01 9 138712788 138712788 T G CAMSAP1 Missense_Mutation p.D1240A 0.15 deleterious(0.02) benign(0.011) TCGA-D7-A4YT-01 9 138825266 138825266 G A UBAC1 Nonsense_Mutation p.Q400* 0.15 TCGA-D7-A4YT-01 9 139995507 139995507 G T MAN1B1 Missense_Mutation p.D323Y 0.10 deleterious(0.03) benign(0.042) TCGA-D7-A4YT-01 9 140435144 140435144 G A PNPLA7 Silent p.L233L 0.11 TCGA-D7-A4YT-01 9 17795579 17795579 C T SH3GL2 Silent p.Y299Y 0.54 TCGA-D7-A4YT-01 9 37740986 37740986 C A FRMPD1 Intron 0.38 TCGA-D7-A4YT-01 9 37785059 37785059 A C EXOSC3 5'Flank 0.63 TCGA-D7-A4YT-01 9 4697116 4697116 G C CDC37L1 Missense_Mutation p.D177H 0.26 deleterious(0) probably_damaging(0.977) TCGA-D7-A4YT-01 9 6013104 6013104 G C RANBP6 Missense_Mutation p.S835C 0.45 deleterious(0.04) possibly_damaging(0.662) TCGA-D7-A4YT-01 9 84531479 84531479 C T SPATA31D5P RNA 0.78 TCGA-D7-A4YT-01 X 11162130 11162130 C T ARHGAP6 Missense_Mutation p.E716K 0.85 tolerated(0.1) possibly_damaging(0.642) TCGA-D7-A4YT-01 X 148037909 148037909 T A AFF2 Missense_Mutation p.F778L 0.07 tolerated(0.16) benign(0.002) TCGA-D7-A4YT-01 X 29301315 29301315 C T IL1RAPL1 Missense_Mutation p.L115F 0.73 tolerated(0.62) benign(0.045) TCGA-D7-A4YT-01 X 48460231 48460231 G A WDR13 Silent p.K297K 0.52 TCGA-D7-A4YT-01 X 48651642 48651642 C T GATA1 Missense_Mutation p.R270W 0.76 deleterious(0) probably_damaging(0.996) TCGA-D7-A4YT-01 X 77378856 77378856 A T PGK1 Silent p.I307I 0.62 TCGA-D7-A4YT-01 X 83129174 83129174 G A CYLC1 Missense_Mutation p.M486I 0.78 deleterious(0.04) benign(0.119) TCGA-D7-A4YT-01 X 84526498 84526498 G C ZNF711 Missense_Mutation p.R650S 0.75 deleterious(0) probably_damaging(1) TCGA-D7-A4YT-01 X 8995918 8995918 T C FAM9B Silent p.Q161Q 0.30 TCGA-D7-A4YU-01 10 104210877 104210877 C G C10orf95 Missense_Mutation p.K37N 0.31 tolerated_low_confidence(0.5) possibly_damaging(0.607) TCGA-D7-A4YU-01 10 118228808 118228808 G T PNLIPRP3 Missense_Mutation p.G347W 0.09 deleterious(0) probably_damaging(0.94) TCGA-D7-A4YU-01 10 129869126 129869126 G A PTPRE Missense_Mutation p.A450T 0.05 tolerated(0.05) benign(0.287) TCGA-D7-A4YU-01 10 17061928 17061928 G T CUBN Missense_Mutation p.P1358T 0.05 tolerated(0.08) benign(0.009) TCGA-D7-A4YU-01 10 21112165 21112165 A C NEBL Missense_Mutation p.V645G 0.49 deleterious(0) benign(0.278) TCGA-D7-A4YU-01 10 61012739 61012739 T G FAM13C Missense_Mutation p.D451A 0.07 deleterious(0.03) probably_damaging(0.953) TCGA-D7-A4YU-01 10 64425905 64425905 A C ZNF365 Missense_Mutation p.S413R 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.504) TCGA-D7-A4YU-01 10 7409728 7409728 G A SFMBT2 Missense_Mutation p.R107C 0.14 deleterious(0) probably_damaging(0.999) TCGA-D7-A4YU-01 10 78709036 78709036 C T KCNMA1 Missense_Mutation p.R841Q 0.31 tolerated(0.16) probably_damaging(0.989) TCGA-D7-A4YU-01 10 91484893 91484893 G T KIF20B Missense_Mutation p.C660F 0.26 tolerated(0.26) benign(0.317) TCGA-D7-A4YU-01 10 94409609 94409610 AA - KIF11 Frame_Shift_Del p.S931Lfs*11 0.27 TCGA-D7-A4YU-01 11 114453577 114453577 A G NXPE4 Missense_Mutation p.F88S 0.30 deleterious(0.03) probably_damaging(0.97) TCGA-D7-A4YU-01 11 123886648 123886648 T C OR10G4 Silent p.L123L 0.21 TCGA-D7-A4YU-01 11 124189952 124189952 A G OR8D2 Silent p.L48L 0.29 TCGA-D7-A4YU-01 11 132177683 132177683 G A NTM Silent p.A209A 0.16 TCGA-D7-A4YU-01 11 2683419 2683419 C G KCNQ1 Intron 0.27 TCGA-D7-A4YU-01 11 30928202 30928202 C A DCDC1 Missense_Mutation p.R1330I 0.09 deleterious(0.02) possibly_damaging(0.506) TCGA-D7-A4YU-01 11 48267435 48267435 C A OR4X2 Missense_Mutation p.D260E 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-D7-A4YU-01 11 49831795 49831795 C A RP11-707M1.1 RNA 0.09 TCGA-D7-A4YU-01 11 5153446 5153446 A C OR52A5 Missense_Mutation p.L143V 0.19 tolerated(1) benign(0.042) TCGA-D7-A4YU-01 11 55065012 55065012 T G TRIM51HP RNA 0.15 TCGA-D7-A4YU-01 11 5862280 5862280 A T OR52E6 Missense_Mutation p.V283D 0.15 deleterious(0) probably_damaging(0.95) TCGA-D7-A4YU-01 11 58711067 58711067 C T GLYATL1 Nonsense_Mutation p.R26* 0.10 TCGA-D7-A4YU-01 11 60235957 60235957 T G MS4A1 3'UTR 0.32 TCGA-D7-A4YU-01 11 61511242 61511242 C T DAGLA Missense_Mutation p.R804W 0.16 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-D7-A4YU-01 11 62299852 62299852 T C AHNAK Silent p.K679K 0.15 TCGA-D7-A4YU-01 11 6292166 6292166 G A CCKBR Intron 0.27 TCGA-D7-A4YU-01 11 63994300 63994300 C G NUDT22 Missense_Mutation p.P59R 0.12 deleterious(0.01) benign(0.246) TCGA-D7-A4YU-01 11 6898077 6898077 T G OR10A4 Missense_Mutation p.L67V 0.12 deleterious(0) probably_damaging(0.998) TCGA-D7-A4YU-01 11 72553748 72553748 C T FCHSD2 Missense_Mutation p.R615H 0.31 tolerated(0.32) benign(0.007) TCGA-D7-A4YU-01 11 75134734 75134734 A G KLHL35 Splice_Site p.X521_splice 0.11 TCGA-D7-A4YU-01 11 89537579 89537579 T G TRIM49 Missense_Mutation p.N20T 0.11 deleterious(0) benign(0.11) TCGA-D7-A4YU-01 11 9009769 9009769 C T NRIP3 Missense_Mutation p.G79S 0.28 tolerated(1) benign(0) TCGA-D7-A4YU-01 11 92534886 92534886 T G FAT3 Missense_Mutation p.S2903A 0.32 possibly_damaging(0.824) TCGA-D7-A4YU-01 12 102590369 102590369 C T PARPBP 3'UTR 0.14 TCGA-D7-A4YU-01 12 106461395 106461395 T G NUAK1 Missense_Mutation p.K391Q 0.16 tolerated(0.05) benign(0.393) TCGA-D7-A4YU-01 12 112480946 112480946 T C NAA25 Missense_Mutation p.I774V 0.15 tolerated(1) benign(0) TCGA-D7-A4YU-01 12 130648665 130648665 C T FZD10 Missense_Mutation p.A393V 0.30 deleterious(0.04) probably_damaging(0.998) TCGA-D7-A4YU-01 12 132624651 132624651 G A DDX51 Silent p.Y589Y 0.30 TCGA-D7-A4YU-01 12 133196274 133196274 G A P2RX2 Missense_Mutation p.V107M 0.29 deleterious(0.02) probably_damaging(0.939) TCGA-D7-A4YU-01 12 20523121 20523121 C T PDE3A Silent p.S301S 0.27 TCGA-D7-A4YU-01 12 40692165 40692165 T C LRRK2 Missense_Mutation p.S1073P 0.14 tolerated(0.21) benign(0.221) TCGA-D7-A4YU-01 12 49224310 49224310 T C DDX23 Missense_Mutation p.Q802R 0.09 deleterious(0.04) benign(0.285) TCGA-D7-A4YU-01 12 53009982 53009982 G A KRT73 Silent p.S210S 0.30 TCGA-D7-A4YU-01 12 56478854 56478854 G A ERBB3 Missense_Mutation p.V104M 0.15 deleterious(0.05) possibly_damaging(0.789) TCGA-D7-A4YU-01 12 71016170 71016170 C G PTPRB Missense_Mutation p.E236D 0.18 deleterious_low_confidence(0.05) benign(0.138) TCGA-D7-A4YU-01 12 77436957 77436957 G C E2F7 Missense_Mutation p.D337E 0.17 deleterious(0) probably_damaging(1) TCGA-D7-A4YU-01 12 9354986 9354986 G A PZP Intron 0.22 TCGA-D7-A4YU-01 12 94976035 94976035 G C TMCC3 Missense_Mutation p.Q120E 0.28 deleterious(0) possibly_damaging(0.678) TCGA-D7-A4YU-01 13 20235930 20235930 C T MPHOSPH8 Silent p.N628N 0.12 TCGA-D7-A4YU-01 13 37014301 37014301 G A CCNA1 Missense_Mutation p.R360K 0.09 tolerated(1) benign(0.054) TCGA-D7-A4YU-01 13 38172767 38172767 G A POSTN Missense_Mutation p.R33C 0.16 deleterious(0) probably_damaging(0.999) TCGA-D7-A4YU-01 13 46946558 46946558 C T KIAA0226L Missense_Mutation p.G18E 0.21 tolerated(0.48) benign(0.069) TCGA-D7-A4YU-01 13 77635848 77635848 G A MYCBP2 Silent p.D4246D 0.13 TCGA-D7-A4YU-01 13 99109504 99109504 G A STK24 Nonsense_Mutation p.R405* 0.28 TCGA-D7-A4YU-01 14 101456498 101456498 C T SNORD114-28 3'Flank 0.20 TCGA-D7-A4YU-01 14 102552358 102552358 A G HSP90AA1 Missense_Mutation p.L211P 0.13 deleterious_low_confidence(0) probably_damaging(1) TCGA-D7-A4YU-01 14 21543200 21543200 C T ARHGEF40 Silent p.G437G 0.13 TCGA-D7-A4YU-01 14 24805445 24805445 T C RIPK3 Missense_Mutation p.E498G 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.537) TCGA-D7-A4YU-01 14 34270197 34270197 C T NPAS3 Missense_Mutation p.T895M 0.33 deleterious_low_confidence(0.01) probably_damaging(0.965) TCGA-D7-A4YU-01 14 63757714 63757715 - G RHOJ Frame_Shift_Ins p.H208Sfs*21 0.10 TCGA-D7-A4YU-01 15 22382738 22382738 A C OR4N4 Missense_Mutation p.K89T 0.10 tolerated(0.21) possibly_damaging(0.786) TCGA-D7-A4YU-01 15 24922935 24922936 AA C NPAP1 Frame_Shift_Del p.K641Qfs*28 0.11 TCGA-D7-A4YU-01 15 25963402 25963402 C T ATP10A Missense_Mutation p.R503Q 0.27 tolerated(0.42) benign(0.028) TCGA-D7-A4YU-01 15 40564645 40564645 G A PAK6 Missense_Mutation p.S360N 0.29 tolerated(0.11) benign(0.024) TCGA-D7-A4YU-01 15 48807654 48807654 A C FBN1 Missense_Mutation p.I466M 0.23 possibly_damaging(0.715) TCGA-D7-A4YU-01 15 48807655 48807655 A T FBN1 Missense_Mutation p.I466N 0.23 possibly_damaging(0.837) TCGA-D7-A4YU-01 15 48818420 48818420 A G FBN1 Missense_Mutation p.C299R 0.26 probably_damaging(0.999) TCGA-D7-A4YU-01 15 59381897 59381897 G A RNF111 Missense_Mutation p.R870H 0.25 tolerated(0.07) benign(0.304) TCGA-D7-A4YU-01 15 60741737 60741737 C A NARG2 Missense_Mutation p.G477C 0.12 deleterious(0.02) possibly_damaging(0.868) TCGA-D7-A4YU-01 15 63008619 63008619 C A TLN2 Silent p.A908A 0.08 TCGA-D7-A4YU-01 15 65862541 65862541 G A PTPLAD1 Missense_Mutation p.R258K 0.06 deleterious(0) probably_damaging(0.999) TCGA-D7-A4YU-01 15 75983006 75983006 C A CSPG4 Missense_Mutation p.A134S 0.24 tolerated(0.7) benign(0.007) TCGA-D7-A4YU-01 15 83296110 83296110 T G CPEB1 Missense_Mutation p.E8D 0.33 tolerated_low_confidence(0.76) benign(0.001) TCGA-D7-A4YU-01 15 91537729 91537729 G A PRC1 5'Flank 0.39 TCGA-D7-A4YU-01 15 93595502 93595502 C T RGMA Silent p.S130S 0.15 TCGA-D7-A4YU-01 16 19126013 19126013 G C ITPRIPL2 Missense_Mutation p.G77A 0.18 tolerated(0.74) benign(0.001) TCGA-D7-A4YU-01 16 2070128 2070128 G A NPW Missense_Mutation p.D76N 0.18 tolerated(0.24) benign(0.008) TCGA-D7-A4YU-01 16 30035367 30035367 G A C16orf92 Missense_Mutation p.V113M 0.17 deleterious(0.04) probably_damaging(0.934) TCGA-D7-A4YU-01 16 54967412 54967412 C T IRX5 Missense_Mutation p.P360L 0.23 deleterious(0.01) unknown(0) TCGA-D7-A4YU-01 16 68011675 68011675 C T DPEP3 Missense_Mutation p.D297N 0.34 tolerated(0.34) benign(0.26) TCGA-D7-A4YU-01 16 68335220 68335222 CTT - SLC7A6OS In_Frame_Del p.K296del 0.16 TCGA-D7-A4YU-01 16 68842415 68842415 C T CDH1 Missense_Mutation p.P159L 0.16 deleterious(0) probably_damaging(0.996) TCGA-D7-A4YU-01 17 1264561 1264561 A T YWHAE Missense_Mutation p.F135I 0.19 deleterious_low_confidence(0) possibly_damaging(0.773) TCGA-D7-A4YU-01 17 27284988 27284988 T C SEZ6 Missense_Mutation p.E760G 0.19 tolerated(1) benign(0.023) TCGA-D7-A4YU-01 17 27939281 27939281 A G ANKRD13B Silent p.P416P 0.22 TCGA-D7-A4YU-01 17 37762570 37762570 C T NEUROD2 Missense_Mutation p.E95K 0.24 tolerated(0.12) benign(0.039) TCGA-D7-A4YU-01 17 38978350 38978350 T C KRT10 Missense_Mutation p.K163R 0.13 deleterious(0.01) probably_damaging(0.998) TCGA-D7-A4YU-01 17 39041346 39041346 G A KRT20 Missense_Mutation p.T31M 0.08 tolerated(0.18) benign(0.004) TCGA-D7-A4YU-01 17 40839908 40839908 C T CNTNAP1 Silent p.D405D 0.20 TCGA-D7-A4YU-01 17 41833119 41833119 T G SOST Missense_Mutation p.Y78S 0.29 tolerated(0.11) benign(0.223) TCGA-D7-A4YU-01 17 72353345 72353345 C T BTBD17 Silent p.S296S 0.36 TCGA-D7-A4YU-01 17 72832361 72832361 C T TMEM104 Silent p.F342F 0.32 TCGA-D7-A4YU-01 17 7578275 7578275 G A TP53 Nonsense_Mutation p.Q192* 0.45 TCGA-D7-A4YU-01 18 13049226 13049226 T G CEP192 Silent p.S812S 0.23 TCGA-D7-A4YU-01 18 19995611 19995611 C T CTAGE1 Missense_Mutation p.V722I 0.24 tolerated(0.33) benign(0.018) TCGA-D7-A4YU-01 18 22806293 22806293 T C ZNF521 Missense_Mutation p.E530G 0.22 deleterious(0) probably_damaging(0.983) TCGA-D7-A4YU-01 18 22806855 22806855 T C ZNF521 Missense_Mutation p.S343G 0.40 deleterious(0) probably_damaging(0.977) TCGA-D7-A4YU-01 18 34833871 34833871 G A CELF4 Missense_Mutation p.A455V 0.14 deleterious(0) benign(0.228) TCGA-D7-A4YU-01 18 40854178 40854178 C A SYT4 Missense_Mutation p.K72N 0.13 deleterious(0.03) benign(0.104) TCGA-D7-A4YU-01 18 43510773 43510773 C T EPG5 Missense_Mutation p.E761K 0.17 tolerated(0.05) probably_damaging(0.953) TCGA-D7-A4YU-01 18 51013309 51013309 C T DCC Silent p.F1293F 0.40 TCGA-D7-A4YU-01 18 59483266 59483266 C A RNF152 Missense_Mutation p.G144V 0.15 tolerated(0.48) benign(0.009) TCGA-D7-A4YU-01 18 74620433 74620433 G A ZNF236 Missense_Mutation p.E817K 0.28 tolerated(0.06) benign(0.102) TCGA-D7-A4YU-01 18 8343485 8343485 C G PTPRM Missense_Mutation p.I1007M 0.35 deleterious(0) probably_damaging(0.982) TCGA-D7-A4YU-01 19 2043500 2043500 A T MKNK2 Splice_Site p.X140_splice 0.17 TCGA-D7-A4YU-01 19 21131694 21131694 A C ZNF85 Missense_Mutation p.K125T 0.21 deleterious(0.04) benign(0.066) TCGA-D7-A4YU-01 19 21203499 21203499 C T ZNF430 5'UTR 0.31 TCGA-D7-A4YU-01 19 22157195 22157195 G T ZNF208 Nonsense_Mutation p.S214* 0.20 TCGA-D7-A4YU-01 19 22271400 22271400 A C ZNF257 Missense_Mutation p.K283T 0.25 deleterious(0) probably_damaging(0.986) TCGA-D7-A4YU-01 19 3656413 3656413 C A PIP5K1C Missense_Mutation p.G204V 0.13 deleterious(0) probably_damaging(0.955) TCGA-D7-A4YU-01 19 367066 367066 G T THEG Silent p.A304A 0.18 TCGA-D7-A4YU-01 19 37310610 37310610 T G ZNF790 Missense_Mutation p.E212D 0.24 tolerated(0.22) benign(0.173) TCGA-D7-A4YU-01 19 4047779 4047779 C T ZBTB7A Missense_Mutation p.D576N 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.555) TCGA-D7-A4YU-01 19 45575376 45575376 G A ZNF296 Missense_Mutation p.P304L 0.24 deleterious(0) possibly_damaging(0.894) TCGA-D7-A4YU-01 19 50098208 50098208 G A PRR12 Missense_Mutation p.E206K 0.27 possibly_damaging(0.502) TCGA-D7-A4YU-01 19 50204612 50204612 G A CPT1C Silent p.L164L 0.20 TCGA-D7-A4YU-01 19 50885722 50885722 C T NR1H2 Missense_Mutation p.R416C 0.17 deleterious(0.03) probably_damaging(0.991) TCGA-D7-A4YU-01 19 52497583 52497583 T C ZNF615 Missense_Mutation p.D260G 0.22 tolerated(0.35) benign(0.025) TCGA-D7-A4YU-01 19 54194212 54194212 G T MIR520A RNA 0.28 TCGA-D7-A4YU-01 19 54201711 54201711 G T MIR523 RNA 0.20 TCGA-D7-A4YU-01 19 5668283 5668283 G A SAFB Missense_Mutation p.R912H 0.17 tolerated_low_confidence(0.58) unknown(0) TCGA-D7-A4YU-01 19 57062027 57062027 T G ZFP28 Intron 0.33 TCGA-D7-A4YU-01 19 58491010 58491010 A G ZNF606 Silent p.N346N 0.27 TCGA-D7-A4YU-01 19 6495840 6495840 C A TUBB4A Missense_Mutation p.D224Y 0.08 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-D7-A4YU-01 19 6707206 6707206 C T C3 Missense_Mutation p.R709H 0.07 tolerated(0.11) benign(0.098) TCGA-D7-A4YU-01 19 9325365 9325365 C T OR7D4 Missense_Mutation p.S50N 0.19 tolerated(0.08) possibly_damaging(0.467) TCGA-D7-A4YU-01 1 102302454 102302454 A C OLFM3 Missense_Mutation p.L66R 0.19 deleterious(0) probably_damaging(0.999) TCGA-D7-A4YU-01 1 103343695 103343695 G T COL11A1 Silent p.V1767V 0.15 TCGA-D7-A4YU-01 1 111060346 111060346 G A KCNA10 Missense_Mutation p.S355L 0.12 deleterious(0) probably_damaging(1) TCGA-D7-A4YU-01 1 114454003 114454003 C A DCLRE1B Missense_Mutation p.S263R 0.13 tolerated(0.65) benign(0.008) TCGA-D7-A4YU-01 1 149858669 149858669 C G HIST2H2AC Missense_Mutation p.P49A 0.22 tolerated_low_confidence(0.06) possibly_damaging(0.776) TCGA-D7-A4YU-01 1 152278692 152278692 A C FLG Missense_Mutation p.S2890R 0.12 possibly_damaging(0.46) TCGA-D7-A4YU-01 1 157737549 157737549 C T FCRL2 Intron 0.30 TCGA-D7-A4YU-01 1 157803243 157803243 G T CD5L Missense_Mutation p.L260M 0.09 deleterious(0.02) probably_damaging(0.992) TCGA-D7-A4YU-01 1 158259792 158259792 A T CD1C 5'UTR 0.27 TCGA-D7-A4YU-01 1 158606546 158606546 T G SPTA1 Missense_Mutation p.K1732T 0.30 deleterious(0) probably_damaging(0.998) TCGA-D7-A4YU-01 1 158607915 158607915 T C SPTA1 Silent p.Q1699Q 0.17 TCGA-D7-A4YU-01 1 165177350 165177350 C T LMX1A Missense_Mutation p.R256Q 0.24 deleterious(0.01) possibly_damaging(0.573) TCGA-D7-A4YU-01 1 204515962 204515962 C G MDM4 Missense_Mutation p.S287C 0.14 deleterious(0.01) possibly_damaging(0.839) TCGA-D7-A4YU-01 1 207753894 207753894 G T CR1 Missense_Mutation p.G1718C 0.17 deleterious(0) probably_damaging(1) TCGA-D7-A4YU-01 1 214816265 214816265 C A CENPF Nonsense_Mutation p.C1528* 0.22 TCGA-D7-A4YU-01 1 241798734 241798734 T C CHML Missense_Mutation p.N112S 0.12 tolerated(0.35) benign(0.001) TCGA-D7-A4YU-01 1 248308749 248308749 A C OR2M5 Missense_Mutation p.Q100H 0.21 deleterious(0.01) benign(0.167) TCGA-D7-A4YU-01 1 248845550 248845550 C A OR14I1 Missense_Mutation p.W19L 0.15 tolerated(0.23) benign(0.064) TCGA-D7-A4YU-01 1 27100390 27100390 G C ARID1A Splice_Site p.X1367_splice 0.21 TCGA-D7-A4YU-01 1 27742538 27742538 A G WASF2 Missense_Mutation p.W160R 0.10 deleterious(0) unknown(0) TCGA-D7-A4YU-01 1 55319136 55319136 C A DHCR24 Missense_Mutation p.Q456H 0.06 tolerated(0.21) benign(0.009) TCGA-D7-A4YU-01 1 86826191 86826191 A T ODF2L Missense_Mutation p.V391D 0.15 deleterious(0.01) probably_damaging(0.921) TCGA-D7-A4YU-01 1 9030988 9030988 C A CA6 Silent p.R264R 0.23 TCGA-D7-A4YU-01 20 30602748 30602748 C T CCM2L Silent p.A24A 0.06 TCGA-D7-A4YU-01 20 36147344 36147344 G A BLCAP Missense_Mutation p.S78L 0.14 tolerated_low_confidence(0.18) benign(0.01) TCGA-D7-A4YU-01 20 44174305 44174305 C T EPPIN-WFDC6 Missense_Mutation p.G66R 0.38 deleterious(0.02) probably_damaging(0.978) TCGA-D7-A4YU-01 20 49626481 49626481 C T KCNG1 Missense_Mutation p.R132H 0.08 deleterious(0.02) possibly_damaging(0.882) TCGA-D7-A4YU-01 21 19653531 19653531 A C TMPRSS15 Missense_Mutation p.L832V 0.29 tolerated(0.24) benign(0.019) TCGA-D7-A4YU-01 21 32493119 32493119 C T TIAM1 Missense_Mutation p.R1448Q 0.45 tolerated(0.12) benign(0.388) TCGA-D7-A4YU-01 22 28194004 28194004 T A MN1 Missense_Mutation p.N843I 0.23 probably_damaging(0.972) TCGA-D7-A4YU-01 22 29837692 29837692 C T RFPL1 Missense_Mutation p.R179C 0.18 tolerated(0.11) benign(0.029) TCGA-D7-A4YU-01 2 109524386 109524386 G A EDAR Missense_Mutation p.P298L 0.18 deleterious(0) possibly_damaging(0.565) TCGA-D7-A4YU-01 2 111542390 111542390 A G ACOXL Missense_Mutation p.K53E 0.20 deleterious(0) benign(0.037) TCGA-D7-A4YU-01 2 131486823 131486823 C A GPR148 Missense_Mutation p.S33R 0.13 tolerated(0.12) possibly_damaging(0.502) TCGA-D7-A4YU-01 2 137852666 137852666 G A THSD7B Missense_Mutation p.G392R 0.26 deleterious(0.05) probably_damaging(0.996) TCGA-D7-A4YU-01 2 141299347 141299347 C A LRP1B Splice_Site p.X2463_splice 0.17 TCGA-D7-A4YU-01 2 160295025 160295025 G A BAZ2B Missense_Mutation p.S361F 0.18 possibly_damaging(0.485) TCGA-D7-A4YU-01 2 179398461 179398461 G T TTN Nonsense_Mutation p.S34294* 0.21 TCGA-D7-A4YU-01 2 179434772 179434772 G T TTN Missense_Mutation p.R25363S 0.06 TCGA-D7-A4YU-01 2 179443586 179443586 T C TTN Missense_Mutation p.Y22724C 0.25 TCGA-D7-A4YU-01 2 197185083 197185083 A C HECW2 Missense_Mutation p.V322G 0.13 deleterious(0) benign(0.022) TCGA-D7-A4YU-01 2 202208958 202208958 G T ALS2CR12 Missense_Mutation p.Q133K 0.19 deleterious(0) possibly_damaging(0.71) TCGA-D7-A4YU-01 2 208988868 208988868 C T CRYGD Missense_Mutation p.D74N 0.20 deleterious(0.04) benign(0.083) TCGA-D7-A4YU-01 2 212251789 212251789 T C ERBB4 Silent p.E1090E 0.22 TCGA-D7-A4YU-01 2 219856890 219856890 G A CRYBA2 Silent p.S79S 0.14 TCGA-D7-A4YU-01 2 230223363 230223363 C A DNER Nonsense_Mutation p.G703* 0.19 TCGA-D7-A4YU-01 2 231371021 231371021 C A SP100 Missense_Mutation p.T625N 0.09 deleterious(0.05) benign(0.099) TCGA-D7-A4YU-01 2 242155602 242155602 G A ANO7 Missense_Mutation p.D695N 0.19 tolerated(0.07) possibly_damaging(0.858) TCGA-D7-A4YU-01 2 26950835 26950835 T C KCNK3 Missense_Mutation p.I195T 0.29 deleterious(0.05) probably_damaging(0.999) TCGA-D7-A4YU-01 2 40657239 40657239 A G SLC8A1 Missense_Mutation p.L61S 0.21 deleterious(0) probably_damaging(0.98) TCGA-D7-A4YU-01 2 44554027 44554027 G A PREPL Missense_Mutation p.R524C 0.14 tolerated(0.09) benign(0.008) TCGA-D7-A4YU-01 2 55920812 55920812 C G PNPT1 Silent p.V49V 0.08 TCGA-D7-A4YU-01 2 84518223 84518223 G A FUNDC2P2 RNA 0.22 TCGA-D7-A4YU-01 2 86847542 86847543 - TGC RNF103-CHMP3 In_Frame_Ins p.A14dup 0.10 TCGA-D7-A4YU-01 2 88327339 88327339 C T KRCC1 Silent p.E248E 0.13 TCGA-D7-A4YU-01 2 97400258 97400258 A T LMAN2L Nonsense_Mutation p.C104* 0.24 TCGA-D7-A4YU-01 2 99439596 99439596 C T KIAA1211L Silent p.P380P 0.40 TCGA-D7-A4YU-01 3 102187912 102187912 T A ZPLD1 Missense_Mutation p.M305K 0.21 deleterious(0) benign(0.159) TCGA-D7-A4YU-01 3 107474490 107474490 C T BBX Missense_Mutation p.R291C 0.19 tolerated(0.21) probably_damaging(0.999) TCGA-D7-A4YU-01 3 113002434 113002434 G A BOC Missense_Mutation p.V870I 0.10 tolerated(0.17) probably_damaging(0.997) TCGA-D7-A4YU-01 3 114014537 114014537 T G TIGIT Missense_Mutation p.C69W 0.25 tolerated(0.05) possibly_damaging(0.779) TCGA-D7-A4YU-01 3 132418811 132418811 C T NPHP3 Missense_Mutation p.R613H 0.09 deleterious(0.03) benign(0.175) TCGA-D7-A4YU-01 3 133653654 133653654 C T SLCO2A1 Missense_Mutation p.G612D 0.12 deleterious(0.05) possibly_damaging(0.707) TCGA-D7-A4YU-01 3 150877793 150877793 G A MED12L Missense_Mutation p.G338S 0.24 tolerated(0.86) probably_damaging(0.989) TCGA-D7-A4YU-01 3 151095885 151095885 G T MED12L Missense_Mutation p.A1433S 0.08 tolerated(0.06) probably_damaging(0.997) TCGA-D7-A4YU-01 3 159614519 159614519 G T IQCJ-SCHIP1 Nonsense_Mutation p.E550* 0.27 TCGA-D7-A4YU-01 3 167083738 167083738 C T ZBBX Missense_Mutation p.G70E 0.09 deleterious(0) probably_damaging(0.993) TCGA-D7-A4YU-01 3 169557820 169557820 C T LRRC31 Missense_Mutation p.D537N 0.29 tolerated(1) benign(0) TCGA-D7-A4YU-01 3 190338192 190338192 G A IL1RAP Silent p.T222T 0.05 TCGA-D7-A4YU-01 3 195505242 195505242 G A MUC4 Missense_Mutation p.S4292F 0.31 probably_damaging(0.994) TCGA-D7-A4YU-01 3 35778739 35778739 G A ARPP21 Missense_Mutation p.R476Q 0.13 deleterious(0.04) benign(0.135) TCGA-D7-A4YU-01 3 39229243 39229243 C T XIRP1 Missense_Mutation p.R565Q 0.21 tolerated(0.51) benign(0.014) TCGA-D7-A4YU-01 3 4494657 4494657 G A SUMF1 Missense_Mutation p.A116V 0.09 tolerated(0.28) benign(0.226) TCGA-D7-A4YU-01 3 49412900 49412900 G C RHOA Missense_Mutation p.N41K 0.22 deleterious(0.01) benign(0.309) TCGA-D7-A4YU-01 3 49756171 49756171 C T AMIGO3 Missense_Mutation p.R243H 0.08 tolerated(0.26) benign(0.007) TCGA-D7-A4YU-01 3 52702550 52702550 G A PBRM1 Silent p.F116F 0.12 TCGA-D7-A4YU-01 3 69028852 69028852 A C EOGT Missense_Mutation p.L350R 0.23 deleterious(0) probably_damaging(0.955) TCGA-D7-A4YU-01 4 138452262 138452262 T C PCDH18 Silent p.Q327Q 0.37 TCGA-D7-A4YU-01 4 177082116 177082116 T A WDR17 Missense_Mutation p.S929T 0.15 tolerated(0.34) benign(0.132) TCGA-D7-A4YU-01 4 4304670 4304670 C T ZBTB49 Silent p.C369C 0.19 TCGA-D7-A4YU-01 4 70723267 70723267 C T SULT1E1 Silent p.A32A 0.38 TCGA-D7-A4YU-01 5 129039996 129039996 A C ADAMTS19 Missense_Mutation p.K1069T 0.15 deleterious(0.03) probably_damaging(0.978) TCGA-D7-A4YU-01 5 130825266 130825266 C G RAPGEF6 Missense_Mutation p.A605P 0.21 deleterious(0) possibly_damaging(0.868) TCGA-D7-A4YU-01 5 136324155 136324155 T G SPOCK1 Missense_Mutation p.K295T 0.22 tolerated(0.28) probably_damaging(0.999) TCGA-D7-A4YU-01 5 137088877 137088877 G A HNRNPA0 Silent p.G293G 0.39 TCGA-D7-A4YU-01 5 137661584 137661584 G C CDC25C Missense_Mutation p.L127V 0.11 deleterious(0.04) benign(0.088) TCGA-D7-A4YU-01 5 140222910 140222910 G A PCDHA8 Silent p.S668S 0.17 TCGA-D7-A4YU-01 5 140230657 140230657 A G PCDHA9 Intron 0.11 TCGA-D7-A4YU-01 5 140562740 140562740 G A PCDHB16 Silent p.R202R 0.10 TCGA-D7-A4YU-01 5 156929870 156929870 G A ADAM19 Missense_Mutation p.R417W 0.23 deleterious(0) possibly_damaging(0.828) TCGA-D7-A4YU-01 5 24487971 24487971 A G CDH10 Missense_Mutation p.L723P 0.28 tolerated(0.26) benign(0.031) TCGA-D7-A4YU-01 5 33614400 33614400 G T ADAMTS12 Missense_Mutation p.Q824K 0.28 tolerated(0.33) benign(0.001) TCGA-D7-A4YU-01 5 33936965 33936965 C T RXFP3 Silent p.N40N 0.18 TCGA-D7-A4YU-01 5 52229783 52229783 A G ITGA1 Missense_Mutation p.N974S 0.15 tolerated(0.22) benign(0.019) TCGA-D7-A4YU-01 5 72469041 72469041 C T TMEM174 5'UTR 0.08 TCGA-D7-A4YU-01 5 82837805 82837805 A C VCAN Missense_Mutation p.S2995R 0.09 tolerated(0.3) benign(0.052) TCGA-D7-A4YU-01 5 9044528 9044528 T G SEMA5A Missense_Mutation p.H1021P 0.18 tolerated(0.19) possibly_damaging(0.589) TCGA-D7-A4YU-01 5 94749783 94749783 C G FAM81B Missense_Mutation p.C142W 0.09 deleterious(0.02) probably_damaging(0.999) TCGA-D7-A4YU-01 6 100382309 100382309 A C MCHR2 Silent p.T224T 0.24 TCGA-D7-A4YU-01 6 107088263 107088263 G A QRSL1 Missense_Mutation p.E22K 0.34 deleterious(0.01) probably_damaging(0.991) TCGA-D7-A4YU-01 6 112512889 112512889 G A LAMA4 Missense_Mutation p.R223C 0.42 deleterious(0) probably_damaging(0.913) TCGA-D7-A4YU-01 6 132909837 132909837 C T TAAR5 Missense_Mutation p.R330H 0.18 deleterious(0) benign(0.063) TCGA-D7-A4YU-01 6 134305750 134305750 G A TBPL1 Missense_Mutation p.R141Q 0.14 deleterious(0) possibly_damaging(0.507) TCGA-D7-A4YU-01 6 143093770 143093770 G A HIVEP2 Silent p.S702S 0.11 TCGA-D7-A4YU-01 6 144507996 144507996 C T STX11 Missense_Mutation p.R78C 0.27 deleterious(0) probably_damaging(1) TCGA-D7-A4YU-01 6 144801088 144801088 A C UTRN Missense_Mutation p.E1159D 0.27 tolerated(0.28) benign(0.162) TCGA-D7-A4YU-01 6 163735984 163735984 G A PACRG Missense_Mutation p.V286M 0.28 tolerated(1) benign(0.002) TCGA-D7-A4YU-01 6 170592364 170592364 T G DLL1 Missense_Mutation p.Q668P 0.32 tolerated(0.21) benign(0.001) TCGA-D7-A4YU-01 6 170594140 170594140 G A DLL1 Silent p.D372D 0.17 TCGA-D7-A4YU-01 6 21595667 21595667 G A SOX4 Missense_Mutation p.G301D 0.34 deleterious(0) unknown(0) TCGA-D7-A4YU-01 6 28057156 28057156 T A ZNF165 Missense_Mutation p.Y456N 0.26 deleterious(0) probably_damaging(0.93) TCGA-D7-A4YU-01 6 28217613 28217613 C G ZKSCAN4 Splice_Site p.X142_splice 0.11 TCGA-D7-A4YU-01 6 30680604 30680604 C G MDC1 Missense_Mutation p.S372T 0.34 tolerated(0.06) benign(0.132) TCGA-D7-A4YU-01 6 43096749 43096749 G A PTK7 Silent p.P46P 0.08 TCGA-D7-A4YU-01 6 62390958 62390958 T A KHDRBS2 Missense_Mutation p.E320D 0.17 tolerated(0.99) benign(0.079) TCGA-D7-A4YU-01 7 103143594 103143594 C T RELN Nonsense_Mutation p.W2786* 0.24 TCGA-D7-A4YU-01 7 108524044 108524044 A T C7orf66 3'UTR 0.12 TCGA-D7-A4YU-01 7 121650904 121650904 A G PTPRZ1 Missense_Mutation p.N602D 0.29 tolerated_low_confidence(0.16) benign(0.004) TCGA-D7-A4YU-01 7 126086287 126086287 T G GRM8 Missense_Mutation p.K857T 0.18 deleterious(0.03) possibly_damaging(0.494) TCGA-D7-A4YU-01 7 126086390 126086390 T G GRM8 Missense_Mutation p.S823R 0.20 deleterious(0) possibly_damaging(0.892) TCGA-D7-A4YU-01 7 127223170 127223170 G A GCC1 Missense_Mutation p.A409V 0.25 deleterious(0) probably_damaging(0.998) TCGA-D7-A4YU-01 7 137096916 137096916 C T DGKI Silent p.K941K 0.20 TCGA-D7-A4YU-01 7 141619330 141619330 G A OR9A4 Missense_Mutation p.A219T 0.18 tolerated(1) benign(0) TCGA-D7-A4YU-01 7 150034324 150034324 A C LRRC61 Missense_Mutation p.E125A 0.19 deleterious(0.01) possibly_damaging(0.608) TCGA-D7-A4YU-01 7 151927304 151927304 C T KMT2C Splice_Site p.X957_splice 0.17 TCGA-D7-A4YU-01 7 156762348 156762348 C G NOM1 Missense_Mutation p.A845G 0.20 deleterious(0) possibly_damaging(0.877) TCGA-D7-A4YU-01 7 37907454 37907454 G A NME8 Missense_Mutation p.V258I 0.28 tolerated(0.45) benign(0.001) TCGA-D7-A4YU-01 7 4218127 4218127 G T SDK1 Missense_Mutation p.K1669N 0.12 deleterious(0.01) probably_damaging(0.948) TCGA-D7-A4YU-01 7 4247869 4247869 G A SDK1 Missense_Mutation p.G1785R 0.13 deleterious(0) probably_damaging(0.998) TCGA-D7-A4YU-01 7 43917267 43917267 T C URGCP Missense_Mutation p.T599A 0.21 tolerated(0.77) benign(0) TCGA-D7-A4YU-01 7 54612434 54612434 C T VSTM2A Missense_Mutation p.R67W 0.28 deleterious(0.01) probably_damaging(0.971) TCGA-D7-A4YU-01 7 57522244 57522244 T A ZNF716 Missense_Mutation p.L40I 0.18 deleterious(0) probably_damaging(0.996) TCGA-D7-A4YU-01 7 57529438 57529438 A G ZNF716 Missense_Mutation p.K424R 0.23 tolerated(0.09) benign(0.029) TCGA-D7-A4YU-01 7 66479483 66479483 C A TYW1 Missense_Mutation p.L169M 0.21 deleterious(0) probably_damaging(1) TCGA-D7-A4YU-01 7 72683282 72683282 G A GTF2IRD2P1 RNA 0.12 TCGA-D7-A4YU-01 7 82545713 82545713 T G PCLO Missense_Mutation p.E3863D 0.23 unknown(0) TCGA-D7-A4YU-01 7 83590815 83590815 G A SEMA3A Nonsense_Mutation p.R730* 0.20 TCGA-D7-A4YU-01 7 94038121 94038121 G A COL1A2 Missense_Mutation p.A260T 0.29 unknown(0) TCGA-D7-A4YU-01 8 105235985 105235985 T C RIMS2 Intron 0.44 TCGA-D7-A4YU-01 8 139164936 139164936 T G FAM135B Missense_Mutation p.K594N 0.12 tolerated(0.09) possibly_damaging(0.478) TCGA-D7-A4YU-01 8 139263121 139263121 G A FAM135B Missense_Mutation p.H169Y 0.11 deleterious(0) probably_damaging(0.988) TCGA-D7-A4YU-01 8 25301820 25301820 C G KCTD9 Missense_Mutation p.E68Q 0.23 tolerated(0.11) possibly_damaging(0.464) TCGA-D7-A4YU-01 8 26238487 26238487 A G BNIP3L 5'Flank 0.33 TCGA-D7-A4YU-01 8 4852000 4852000 A G CSMD1 5'Flank 0.38 TCGA-D7-A4YU-01 8 65494391 65494391 G A BHLHE22 Silent p.P348P 0.33 TCGA-D7-A4YU-01 8 65536986 65536986 C G CYP7B1 Missense_Mutation p.G78A 0.08 deleterious(0.01) probably_damaging(1) TCGA-D7-A4YU-01 9 112899268 112899268 G A PALM2-AKAP2 Missense_Mutation p.E482K 0.12 deleterious(0) probably_damaging(0.998) TCGA-D7-A4YU-01 9 117791715 117791715 G A TNC Silent p.N2031N 0.35 TCGA-D7-A4YU-01 9 118973933 118973933 A C PAPPA Missense_Mutation p.N547T 0.25 deleterious(0) possibly_damaging(0.728) TCGA-D7-A4YU-01 9 137300121 137300121 G A RXRA Missense_Mutation p.A136T 0.07 tolerated(0.06) benign(0.072) TCGA-D7-A4YU-01 9 141070135 141070135 G T TUBBP5 RNA 0.30 TCGA-D7-A4YU-01 9 18706804 18706804 G A ADAMTSL1 Missense_Mutation p.R545Q 0.21 deleterious(0) probably_damaging(1) TCGA-D7-A4YU-01 9 77377031 77377031 A C TRPM6 Missense_Mutation p.L1519R 0.09 tolerated_low_confidence(0.1) benign(0.235) TCGA-D7-A4YU-01 X 125298766 125298766 T G DCAF12L2 Missense_Mutation p.K381T 0.44 deleterious(0) benign(0.049) TCGA-D7-A4YU-01 X 12627882 12627882 G A FRMPD4 Silent p.E67E 0.45 TCGA-D7-A4YU-01 X 1327788 1327788 C G CRLF2 Missense_Mutation p.Q31H 0.20 tolerated(0.09) benign(0.04) TCGA-D7-A4YU-01 X 151123878 151123878 T G GABRE Missense_Mutation p.N367H 0.26 tolerated(0.07) probably_damaging(0.939) TCGA-D7-A4YU-01 X 152226465 152226465 A T PNMA3 Missense_Mutation p.E351D 0.42 tolerated(0.52) benign(0.002) TCGA-D7-A4YU-01 X 38176655 38176655 C G RPGR Missense_Mutation p.S178T 0.10 benign(0.055) TCGA-D7-A4YU-01 X 70347218 70347218 G A MED12 Missense_Mutation p.R961Q 0.31 benign(0.227) TCGA-D7-A4YU-01 X 86887303 86887303 T C KLHL4 Missense_Mutation p.V473A 0.36 deleterious(0.03) probably_damaging(0.999) TCGA-D7-A4YU-01 X 88008710 88008710 A T CPXCR1 Nonsense_Mutation p.K99* 0.60 TCGA-D7-A4YU-01 Y 2655179 2655179 C T SRY Missense_Mutation p.E156K 0.64 tolerated(0.74) benign(0.002) TCGA-D7-A4YV-01 10 103825418 103825418 C G HPS6 Missense_Mutation p.P63A 0.33 tolerated(0.93) benign(0.003) TCGA-D7-A4YV-01 10 104161261 104161261 C T NFKB2 Missense_Mutation p.P760L 0.19 deleterious(0.04) probably_damaging(0.988) TCGA-D7-A4YV-01 10 104231116 104231116 G A TMEM180 Missense_Mutation p.R264Q 0.22 tolerated(0.21) benign(0.02) TCGA-D7-A4YV-01 10 111893350 111893350 A - ADD3 Frame_Shift_Del p.K701Rfs*8 0.24 TCGA-D7-A4YV-01 10 112258088 112258088 C T DUSP5 Missense_Mutation p.A70V 0.36 tolerated(0.15) benign(0.151) TCGA-D7-A4YV-01 10 116049200 116049200 G A VWA2 Missense_Mutation p.A692T 0.20 tolerated(0.44) benign(0.001) TCGA-D7-A4YV-01 10 122263340 122263340 T - PPAPDC1A Frame_Shift_Del p.L24Wfs*46 0.22 TCGA-D7-A4YV-01 10 124266390 124266390 G A HTRA1 Missense_Mutation p.A321T 0.22 deleterious(0.02) probably_damaging(0.999) TCGA-D7-A4YV-01 10 124896863 124896863 G A HMX3 Silent p.T230T 0.26 TCGA-D7-A4YV-01 10 124896921 124896921 C T HMX3 Missense_Mutation p.R250C 0.18 deleterious(0) probably_damaging(0.999) TCGA-D7-A4YV-01 10 127462428 127462428 C T MMP21 Silent p.A223A 0.26 TCGA-D7-A4YV-01 10 129913669 129913669 C T MKI67 Missense_Mutation p.A335T 0.26 tolerated(0.43) benign(0.028) TCGA-D7-A4YV-01 10 134647007 134647007 G A TTC40 Silent p.A2324A 0.10 TCGA-D7-A4YV-01 10 134671251 134671251 G A TTC40 Missense_Mutation p.A1806V 0.46 tolerated(0.09) benign(0.016) TCGA-D7-A4YV-01 10 134999993 134999993 C T KNDC1 Missense_Mutation p.R381C 0.19 tolerated(0.11) benign(0.095) TCGA-D7-A4YV-01 10 135233645 135233645 C - MTG1 Frame_Shift_Del p.P329Rfs*28 0.15 TCGA-D7-A4YV-01 10 14709682 14709684 TTC - FAM107B In_Frame_Del p.E140del 0.28 TCGA-D7-A4YV-01 10 16562483 16562484 - T C1QL3 Frame_Shift_Ins p.N194Kfs*7 0.27 TCGA-D7-A4YV-01 10 17632370 17632370 T A PTPLA Missense_Mutation p.D287V 0.21 deleterious(0) possibly_damaging(0.892) TCGA-D7-A4YV-01 10 18834894 18834895 - A NSUN6 Frame_Shift_Ins p.I460Yfs*64 0.22 TCGA-D7-A4YV-01 10 21101815 21101815 C T NEBL Missense_Mutation p.V801M 0.32 tolerated(0.09) benign(0.104) TCGA-D7-A4YV-01 10 24909463 24909463 C A ARHGAP21 Missense_Mutation p.R454L 0.11 tolerated(0.09) benign(0.275) TCGA-D7-A4YV-01 10 27539025 27539025 C - RP11-85G18.6 RNA 0.27 TCGA-D7-A4YV-01 10 28272792 28272792 C A ARMC4 Nonsense_Mutation p.G267* 0.05 TCGA-D7-A4YV-01 10 29760116 29760116 C - SVIL Frame_Shift_Del p.M1863Wfs*44 0.30 TCGA-D7-A4YV-01 10 34759114 34759114 A - PARD3 Frame_Shift_Del p.S161Pfs*62 0.08 TCGA-D7-A4YV-01 10 43606743 43606743 C T RET Missense_Mutation p.T451M 0.24 deleterious(0.01) benign(0.069) TCGA-D7-A4YV-01 10 50315810 50315810 G A VSTM4 Missense_Mutation p.R96W 0.24 tolerated(0.26) probably_damaging(0.956) TCGA-D7-A4YV-01 10 50955158 50955158 A G OGDHL Missense_Mutation p.S362P 0.21 deleterious(0.03) probably_damaging(1) TCGA-D7-A4YV-01 10 50955201 50955201 G A OGDHL Silent p.R347R 0.21 TCGA-D7-A4YV-01 10 5415694 5415694 C T UCN3 Missense_Mutation p.P4L 0.17 deleterious(0) possibly_damaging(0.726) TCGA-D7-A4YV-01 10 55581906 55581906 G T PCDH15 Silent p.S1862S 0.19 TCGA-D7-A4YV-01 10 5791440 5791440 C A FAM208B Missense_Mutation p.P2019H 0.05 deleterious(0.02) benign(0.426) TCGA-D7-A4YV-01 10 61014012 61014012 G A FAM13C Intron 0.20 TCGA-D7-A4YV-01 10 61666191 61666191 C T CCDC6 5'UTR 0.33 TCGA-D7-A4YV-01 10 61831291 61831291 T C ANK3 Silent p.K3116K 0.22 TCGA-D7-A4YV-01 10 61958143 61958143 G A ANK3 Silent p.A548A 0.16 TCGA-D7-A4YV-01 10 70202690 70202690 T C DNA2 Missense_Mutation p.M553V 0.13 tolerated(0.1) benign(0.005) TCGA-D7-A4YV-01 10 70332865 70332865 C - TET1 Frame_Shift_Del p.V260Lfs*11 0.24 TCGA-D7-A4YV-01 10 70332938 70332938 G T TET1 Missense_Mutation p.K281N 0.19 deleterious(0) possibly_damaging(0.901) TCGA-D7-A4YV-01 10 70450669 70450669 G A TET1 Missense_Mutation p.A1837T 0.31 tolerated(0.91) benign(0.003) TCGA-D7-A4YV-01 10 73405660 73405660 G A CDH23 Missense_Mutation p.V405I 0.33 tolerated(0.57) benign(0.02) TCGA-D7-A4YV-01 10 75535344 75535344 G - FUT11 Frame_Shift_Del p.E462Kfs*6 0.27 TCGA-D7-A4YV-01 10 7820854 7820854 T - KIN Frame_Shift_Del p.T169Lfs*9 0.26 TCGA-D7-A4YV-01 10 78713616 78713616 G A KCNMA1 Silent p.Y751Y 0.29 TCGA-D7-A4YV-01 10 87406943 87406943 G A GRID1 Intron 0.22 TCGA-D7-A4YV-01 10 88911847 88911847 A T FAM35A Missense_Mutation p.I246F 0.27 deleterious(0) benign(0.012) TCGA-D7-A4YV-01 10 93038067 93038067 C T PCGF5 Silent p.F255F 0.25 TCGA-D7-A4YV-01 10 97605164 97605164 C A ENTPD1 Silent p.T220T 0.32 TCGA-D7-A4YV-01 10 98079060 98079060 G A DNTT Silent p.P140P 0.22 TCGA-D7-A4YV-01 11 1011371 1011371 C T AP2A2 3'UTR 0.28 TCGA-D7-A4YV-01 11 102248749 102248749 G A BIRC2 Silent p.R564R 0.30 TCGA-D7-A4YV-01 11 102586154 102586154 C A MMP8 Missense_Mutation p.R306M 0.34 deleterious(0.01) probably_damaging(0.964) TCGA-D7-A4YV-01 11 108129784 108129784 A C ATM Silent p.A816A 0.17 TCGA-D7-A4YV-01 11 1094719 1094719 C T MUC2 Missense_Mutation p.T1936I 0.08 unknown(0) TCGA-D7-A4YV-01 11 112042549 112042549 A T TEX12 Missense_Mutation p.K94N 0.21 deleterious(0.01) possibly_damaging(0.891) TCGA-D7-A4YV-01 11 113078710 113078710 A G NCAM1 Missense_Mutation p.H360R 0.26 tolerated(0.41) benign(0.054) TCGA-D7-A4YV-01 11 113270239 113270239 G - ANKK1 Frame_Shift_Del p.A518Lfs*10 0.36 TCGA-D7-A4YV-01 11 115102146 115102146 T G CADM1 Missense_Mutation p.E163D 0.24 tolerated(0.12) possibly_damaging(0.809) TCGA-D7-A4YV-01 11 117261922 117261922 G T CEP164 Missense_Mutation p.E758D 0.10 deleterious(0) possibly_damaging(0.907) TCGA-D7-A4YV-01 11 118039430 118039430 G A SCN2B Missense_Mutation p.A36V 0.29 tolerated(0.25) benign(0.026) TCGA-D7-A4YV-01 11 12183704 12183705 - G MICAL2 Frame_Shift_Ins p.E3Gfs*5 0.21 TCGA-D7-A4YV-01 11 12225871 12225871 C T MICAL2 Silent p.V113V 0.31 TCGA-D7-A4YV-01 11 12264287 12264287 G A MICAL2 Missense_Mutation p.A876T 0.28 tolerated_low_confidence(0.11) probably_damaging(0.998) TCGA-D7-A4YV-01 11 122930436 122930436 C T HSPA8 Missense_Mutation p.E289K 0.22 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-D7-A4YV-01 11 123065677 123065677 G T CLMP 5'UTR 0.23 TCGA-D7-A4YV-01 11 124524549 124524549 A G SIAE Splice_Site p.X182_splice 0.20 TCGA-D7-A4YV-01 11 1253735 1253735 G A MUC5B Silent p.S633S 0.47 TCGA-D7-A4YV-01 11 1268790 1268790 G A MUC5B Silent p.S3560S 0.19 TCGA-D7-A4YV-01 11 130058082 130058083 - G ST14 Frame_Shift_Ins p.R54Afs*46 0.21 TCGA-D7-A4YV-01 11 132204964 132204964 G A NTM Missense_Mutation p.S331N 0.23 tolerated(1) benign(0.001) TCGA-D7-A4YV-01 11 134182352 134182352 G A GLB1L3 Missense_Mutation p.R466H 0.25 tolerated(0.57) benign(0.001) TCGA-D7-A4YV-01 11 13749177 13749177 C T FAR1 Silent p.Y444Y 0.06 TCGA-D7-A4YV-01 11 1605918 1605918 C T KRTAP5-1 Missense_Mutation p.G188S 0.25 tolerated_low_confidence(0.17) unknown(0) TCGA-D7-A4YV-01 11 16133369 16133369 G - SOX6 Frame_Shift_Del p.P293Lfs*3 0.14 TCGA-D7-A4YV-01 11 18636246 18636249 ACTA - SPTY2D1 Frame_Shift_Del p.S525Afs*6 0.11 TCGA-D7-A4YV-01 11 20078176 20078176 T C NAV2 Splice_Site p.X1667_splice 0.31 TCGA-D7-A4YV-01 11 33087384 33087384 A G TCP11L1 Silent p.L327L 0.25 TCGA-D7-A4YV-01 11 36293244 36293244 G T COMMD9 3'Flank 0.18 TCGA-D7-A4YV-01 11 36595554 36595554 A - RAG1 Frame_Shift_Del p.K235Nfs*29 0.16 TCGA-D7-A4YV-01 11 420496 420496 G A ANO9 Missense_Mutation p.R585W 0.38 deleterious(0) probably_damaging(0.997) TCGA-D7-A4YV-01 11 45672341 45672341 G A CHST1 Nonsense_Mutation p.R45* 0.24 TCGA-D7-A4YV-01 11 46339020 46339020 G A CREB3L1 Missense_Mutation p.V414I 0.34 tolerated(1) benign(0) TCGA-D7-A4YV-01 11 46726912 46726912 G A ZNF408 Silent p.P554P 0.26 TCGA-D7-A4YV-01 11 46918528 46918528 C T LRP4 Missense_Mutation p.A272T 0.24 tolerated(0.39) benign(0.039) TCGA-D7-A4YV-01 11 47202237 47202237 G T PACSIN3 Silent p.P72P 0.22 TCGA-D7-A4YV-01 11 55406142 55406142 T - OR4P4 Frame_Shift_Del p.F105Lfs*4 0.38 TCGA-D7-A4YV-01 11 57982468 57982468 T C OR1S1 Silent p.I84I 0.26 TCGA-D7-A4YV-01 11 58190331 58190331 G A OR5B2 Missense_Mutation p.T135M 0.31 deleterious_low_confidence(0.01) benign(0.414) TCGA-D7-A4YV-01 11 58602201 58602201 G T GLYATL2 Missense_Mutation p.L196I 0.30 tolerated(1) probably_damaging(0.997) TCGA-D7-A4YV-01 11 59344479 59344479 A G OSBP Missense_Mutation p.Y694H 0.31 tolerated(0.08) probably_damaging(1) TCGA-D7-A4YV-01 11 59419061 59419061 G A PATL1 Nonsense_Mutation p.R494* 0.22 TCGA-D7-A4YV-01 11 62303479 62303479 C T AHNAK Missense_Mutation p.G31D 0.19 probably_damaging(0.996) TCGA-D7-A4YV-01 11 6239210 6239210 G A FAM160A2 Nonsense_Mutation p.R550* 0.18 TCGA-D7-A4YV-01 11 6261463 6261463 G A CNGA4 Missense_Mutation p.A147T 0.26 tolerated(0.17) benign(0.002) TCGA-D7-A4YV-01 11 63283104 63283104 A G LGALS12 Silent p.R262R 0.21 TCGA-D7-A4YV-01 11 63307030 63307030 C T RARRES3 Missense_Mutation p.R18C 0.22 deleterious(0) probably_damaging(0.988) TCGA-D7-A4YV-01 11 64540917 64540917 G - SF1 Frame_Shift_Del p.P199Lfs*63 0.24 TCGA-D7-A4YV-01 11 64622143 64622143 C T EHD1 Missense_Mutation p.G423R 0.30 tolerated(0.31) benign(0.008) TCGA-D7-A4YV-01 11 64876853 64876853 G - VPS51 Frame_Shift_Del p.G517Vfs*42 0.25 TCGA-D7-A4YV-01 11 64981434 64981434 G A CAPN1 3'Flank 0.27 TCGA-D7-A4YV-01 11 65308615 65308616 - T LTBP3 Frame_Shift_Ins p.C959Mfs*35 0.15 TCGA-D7-A4YV-01 11 65347567 65347567 C T EHBP1L1 Missense_Mutation p.R110W 0.10 deleterious(0) probably_damaging(1) TCGA-D7-A4YV-01 11 65632486 65632486 A G MUS81 Splice_Site p.X425_splice 0.22 TCGA-D7-A4YV-01 11 6622702 6622702 A G RRP8 Silent p.C198C 0.25 TCGA-D7-A4YV-01 11 66287195 66287195 C T BBS1 Silent p.P233P 0.08 TCGA-D7-A4YV-01 11 6651257 6651257 C T DCHS1 Missense_Mutation p.G1590S 0.39 deleterious(0.01) probably_damaging(0.962) TCGA-D7-A4YV-01 11 66638891 66638891 C T PC Missense_Mutation p.A128T 0.05 deleterious(0) probably_damaging(0.975) TCGA-D7-A4YV-01 11 66638919 66638919 G A PC Silent p.Y118Y 0.28 TCGA-D7-A4YV-01 11 67203083 67203083 G - PTPRCAP 3'UTR 0.35 TCGA-D7-A4YV-01 11 67207611 67207611 C T CORO1B Missense_Mutation p.V329I 0.17 tolerated(0.08) benign(0.308) TCGA-D7-A4YV-01 11 688398 688398 G A DEAF1 Silent p.V150V 0.25 TCGA-D7-A4YV-01 11 6913341 6913341 G A OR2D2 Missense_Mutation p.R131C 0.21 deleterious(0.01) benign(0.012) TCGA-D7-A4YV-01 11 74554923 74554923 G A XRRA1 Missense_Mutation p.R701W 0.21 deleterious(0.01) possibly_damaging(0.816) TCGA-D7-A4YV-01 11 76910863 76910863 G A MYO7A Missense_Mutation p.A1618T 0.15 tolerated(0.15) benign(0.006) TCGA-D7-A4YV-01 11 770850 770850 T C PDDC1 3'UTR 0.21 TCGA-D7-A4YV-01 11 869797 869797 C A CHID1 3'UTR 0.32 TCGA-D7-A4YV-01 11 94189473 94189473 T - MRE11A Frame_Shift_Del p.N511Ifs*13 0.22 TCGA-D7-A4YV-01 12 10321711 10321711 A G OLR1 Missense_Mutation p.L47P 0.24 deleterious(0) probably_damaging(0.943) TCGA-D7-A4YV-01 12 104031830 104031830 A G STAB2 Missense_Mutation p.H249R 0.38 tolerated(0.11) benign(0.016) TCGA-D7-A4YV-01 12 108010875 108010875 G C BTBD11 Missense_Mutation p.D671H 0.36 deleterious(0) probably_damaging(0.997) TCGA-D7-A4YV-01 12 108169097 108169097 C - ASCL4 Frame_Shift_Del p.L37Sfs*53 0.16 TCGA-D7-A4YV-01 12 108600079 108600079 C A WSCD2 Silent p.G132G 0.19 TCGA-D7-A4YV-01 12 109181783 109181783 G A SSH1 Missense_Mutation p.S1044L 0.26 tolerated_low_confidence(0.22) benign(0) TCGA-D7-A4YV-01 12 109998867 109998867 C T MMAB Missense_Mutation p.V188M 0.38 deleterious(0.01) possibly_damaging(0.862) TCGA-D7-A4YV-01 12 111786141 111786141 G - CUX2 3'UTR 0.11 TCGA-D7-A4YV-01 12 112647918 112647918 C T HECTD4 Missense_Mutation p.A2444T 0.21 possibly_damaging(0.689) TCGA-D7-A4YV-01 12 112669482 112669482 G A HECTD4 Missense_Mutation p.A1866V 0.54 possibly_damaging(0.777) TCGA-D7-A4YV-01 12 113354535 113354535 G A OAS1 Silent p.T292T 0.12 TCGA-D7-A4YV-01 12 113448306 113448306 G A OAS2 3'UTR 0.46 TCGA-D7-A4YV-01 12 113733862 113733862 G A TPCN1 Missense_Mutation p.R883H 0.14 deleterious_low_confidence(0.01) unknown(0) TCGA-D7-A4YV-01 12 114793421 114793421 A G TBX5 Silent p.H491H 0.18 TCGA-D7-A4YV-01 12 120750797 120750797 T C SIRT4 Silent p.N301N 0.18 TCGA-D7-A4YV-01 12 121104744 121104744 C T CABP1 3'UTR 0.19 TCGA-D7-A4YV-01 12 121660807 121660807 C T P2RX4 Missense_Mutation p.A178V 0.37 deleterious(0.03) benign(0.219) TCGA-D7-A4YV-01 12 122691861 122691861 G A B3GNT4 Missense_Mutation p.E355K 0.18 deleterious(0.01) probably_damaging(0.964) TCGA-D7-A4YV-01 12 124826544 124826544 G A NCOR2 Silent p.R1671R 0.18 TCGA-D7-A4YV-01 12 125613904 125613904 G A AACS Missense_Mutation p.G483S 0.05 deleterious(0) probably_damaging(0.99) TCGA-D7-A4YV-01 12 130648101 130648101 C T FZD10 Missense_Mutation p.A205V 0.12 tolerated(0.25) benign(0.098) TCGA-D7-A4YV-01 12 130856060 130856060 G T PIWIL1 Missense_Mutation p.A835S 0.34 deleterious(0) probably_damaging(0.99) TCGA-D7-A4YV-01 12 132393282 132393282 G A ULK1 Missense_Mutation p.R137H 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-D7-A4YV-01 12 132549334 132549334 C A EP400 Missense_Mutation p.P2819Q 0.09 probably_damaging(0.91) TCGA-D7-A4YV-01 12 132551511 132551511 G A EP400 Missense_Mutation p.A2916T 0.12 possibly_damaging(0.552) TCGA-D7-A4YV-01 12 13716251 13716251 G A GRIN2B Silent p.F1307F 0.22 TCGA-D7-A4YV-01 12 15035053 15035053 T - MGP 3'UTR 0.37 TCGA-D7-A4YV-01 12 20792849 20792849 A G PDE3A Missense_Mutation p.N737D 0.36 deleterious(0) possibly_damaging(0.833) TCGA-D7-A4YV-01 12 26640046 26640046 T - ITPR2 Frame_Shift_Del p.R1837Gfs*7 0.19 TCGA-D7-A4YV-01 12 27813828 27813829 - A PPFIBP1 Frame_Shift_Ins p.M308Nfs*13 0.18 TCGA-D7-A4YV-01 12 27829455 27829455 G A PPFIBP1 Missense_Mutation p.R519Q 0.22 deleterious(0.03) benign(0.246) TCGA-D7-A4YV-01 12 27829478 27829478 C G PPFIBP1 Missense_Mutation p.R527G 0.22 deleterious(0.02) probably_damaging(0.934) TCGA-D7-A4YV-01 12 2789628 2789628 G T CACNA1C Intron 0.53 TCGA-D7-A4YV-01 12 28116399 28116399 G A PTHLH Nonsense_Mutation p.Q136* 0.13 TCGA-D7-A4YV-01 12 2936456 2936456 C T NRIP2 Missense_Mutation p.D255N 0.37 tolerated(0.36) probably_damaging(0.986) TCGA-D7-A4YV-01 12 31135580 31135580 G A TSPAN11 Silent p.V190V 0.50 TCGA-D7-A4YV-01 12 3763474 3763474 C A EFCAB4B Missense_Mutation p.R317L 0.21 tolerated(0.08) benign(0.01) TCGA-D7-A4YV-01 12 46244967 46244967 C - ARID2 Frame_Shift_Del p.P1022Hfs*38 0.15 TCGA-D7-A4YV-01 12 46285562 46285562 G C ARID2 Splice_Site p.X1641_splice 0.29 TCGA-D7-A4YV-01 12 4708291 4708291 A G DYRK4 Missense_Mutation p.M220V 0.20 tolerated(0.19) benign(0.034) TCGA-D7-A4YV-01 12 49170977 49170977 C T ADCY6 Missense_Mutation p.C429Y 0.48 deleterious(0) probably_damaging(0.999) TCGA-D7-A4YV-01 12 4920472 4920472 C T KCNA6 Missense_Mutation p.T422M 0.27 deleterious(0) probably_damaging(1) TCGA-D7-A4YV-01 12 49374303 49374303 C T WNT1 Missense_Mutation p.T152M 0.14 deleterious(0.02) probably_damaging(0.966) TCGA-D7-A4YV-01 12 49434384 49434384 G - KMT2D Frame_Shift_Del p.P2390Rfs*36 0.21 TCGA-D7-A4YV-01 12 5020503 5020503 G A KCNA1 5'UTR 0.22 TCGA-D7-A4YV-01 12 52867151 52867151 C - KRT6C Frame_Shift_Del p.G124Afs*22 0.25 TCGA-D7-A4YV-01 12 52981443 52981443 G A KRT72 Missense_Mutation p.R428C 0.40 deleterious(0.03) probably_damaging(1) TCGA-D7-A4YV-01 12 53452869 53452869 C - TENC1 Frame_Shift_Del p.P492Lfs*38 0.28 TCGA-D7-A4YV-01 12 56142639 56142639 G A GDF11 Missense_Mutation p.D239N 0.24 deleterious(0) possibly_damaging(0.828) TCGA-D7-A4YV-01 12 56478854 56478854 G A ERBB3 Missense_Mutation p.V104M 0.14 deleterious(0.05) possibly_damaging(0.789) TCGA-D7-A4YV-01 12 56563591 56563593 CTT - SMARCC2 In_Frame_Del p.K808del 0.22 TCGA-D7-A4YV-01 12 56993984 56993984 C T BAZ2A Splice_Site p.X1633_splice 0.30 TCGA-D7-A4YV-01 12 57112756 57112756 G A NACA Intron 0.22 TCGA-D7-A4YV-01 12 57127957 57127957 C T PRIM1 Missense_Mutation p.R406Q 0.36 tolerated(0.32) benign(0.002) TCGA-D7-A4YV-01 12 57910907 57910907 C A DDIT3 Missense_Mutation p.E88D 0.50 tolerated(0.38) benign(0.388) TCGA-D7-A4YV-01 12 57966494 57966494 C T KIF5A Silent p.N567N 0.18 TCGA-D7-A4YV-01 12 58006728 58006728 C T ARHGEF25 Missense_Mutation p.A77V 0.40 deleterious(0) benign(0.266) TCGA-D7-A4YV-01 12 64062189 64062189 T C DPY19L2 5'UTR 0.32 TCGA-D7-A4YV-01 12 6705221 6705221 C T CHD4 Missense_Mutation p.V659M 0.05 tolerated(1) benign(0.215) TCGA-D7-A4YV-01 12 69995115 69995115 C T CCT2 3'UTR 0.44 TCGA-D7-A4YV-01 12 72335393 72335393 C T TPH2 Silent p.D45D 0.27 TCGA-D7-A4YV-01 12 7303192 7303192 G A CLSTN3 Silent p.R766R 0.33 TCGA-D7-A4YV-01 12 76442093 76442093 A - NAP1L1 3'UTR 0.35 TCGA-D7-A4YV-01 12 77417772 77417772 C - E2F7 3'UTR 0.24 TCGA-D7-A4YV-01 12 85450035 85450035 A - LRRIQ1 Frame_Shift_Del p.K490Nfs*28 0.16 TCGA-D7-A4YV-01 12 8906585 8906585 A T RIMKLB Missense_Mutation p.E198V 0.36 tolerated(0.06) probably_damaging(0.983) TCGA-D7-A4YV-01 12 91348255 91348255 C A CCER1 Nonsense_Mutation p.G89* 0.25 TCGA-D7-A4YV-01 12 9318785 9318785 T G PZP Silent p.V707V 0.16 TCGA-D7-A4YV-01 12 98848682 98848682 G T SLC9A7P1 RNA 0.25 TCGA-D7-A4YV-01 13 101735484 101735484 C T NALCN Missense_Mutation p.A1217T 0.21 tolerated(0.05) possibly_damaging(0.581) TCGA-D7-A4YV-01 13 111372025 111372025 C T ING1 Nonsense_Mutation p.R339* 0.23 TCGA-D7-A4YV-01 13 113772750 113772750 G A F7 Missense_Mutation p.D277N 0.04 deleterious(0) possibly_damaging(0.753) TCGA-D7-A4YV-01 13 20608469 20608469 G A ZMYM2 Missense_Mutation p.E682K 0.27 deleterious(0) probably_damaging(0.99) TCGA-D7-A4YV-01 13 24233255 24233255 C T TNFRSF19 Missense_Mutation p.A171V 0.21 tolerated(0.17) probably_damaging(0.955) TCGA-D7-A4YV-01 13 24413805 24413805 C T MIPEP Missense_Mutation p.A441T 0.15 tolerated(0.51) benign(0.027) TCGA-D7-A4YV-01 13 28592636 28592636 T G FLT3 Missense_Mutation p.M837L 0.20 tolerated(1) benign(0) TCGA-D7-A4YV-01 13 29287531 29287531 C T SLC46A3 Missense_Mutation p.V116I 0.19 tolerated(0.93) benign(0.004) TCGA-D7-A4YV-01 13 33703176 33703176 C T STARD13 Silent p.T546T 0.27 TCGA-D7-A4YV-01 13 39338488 39338488 A T FREM2 Missense_Mutation p.I1771F 0.04 deleterious(0) probably_damaging(0.982) TCGA-D7-A4YV-01 13 39541050 39541050 G A STOML3 Missense_Mutation p.T263M 0.22 deleterious(0) probably_damaging(0.999) TCGA-D7-A4YV-01 13 42740695 42740696 - T DGKH Frame_Shift_Ins p.V337Cfs*4 0.10 TCGA-D7-A4YV-01 13 46542109 46542109 C T ZC3H13 Missense_Mutation p.R1284Q 0.24 unknown(0) TCGA-D7-A4YV-01 13 46543691 46543691 T - ZC3H13 Frame_Shift_Del p.G997Dfs*40 0.24 TCGA-D7-A4YV-01 13 50590127 50590127 G A KCNRG Silent p.L166L 0.25 TCGA-D7-A4YV-01 13 61109249 61109249 G - TDRD3 Frame_Shift_Del p.A668Qfs*11 0.20 TCGA-D7-A4YV-01 13 76055593 76055593 C - TBC1D4 Frame_Shift_Del p.G104Afs*39 0.18 TCGA-D7-A4YV-01 13 88329509 88329509 G A SLITRK5 Silent p.T622T 0.22 TCGA-D7-A4YV-01 13 98009823 98009823 G A MBNL2 Missense_Mutation p.V298I 0.23 tolerated(0.25) benign(0.008) TCGA-D7-A4YV-01 13 99533825 99533825 C A DOCK9 Missense_Mutation p.R911M 0.25 deleterious(0.02) probably_damaging(0.999) TCGA-D7-A4YV-01 13 99630097 99630097 G - DOCK9 Frame_Shift_Del p.L23Cfs*25 0.35 TCGA-D7-A4YV-01 14 100992293 100992293 C T WDR25 Silent p.D396D 0.26 TCGA-D7-A4YV-01 14 103573763 103573763 G A EXOC3L4 Silent p.P528P 0.19 TCGA-D7-A4YV-01 14 104199060 104199060 C T ZFYVE21 Silent p.G228G 0.08 TCGA-D7-A4YV-01 14 105414282 105414282 G A AHNAK2 Silent p.I2502I 0.28 TCGA-D7-A4YV-01 14 106053635 106053635 G A IGHA2 Missense_Mutation p.P221L 0.21 deleterious(0) probably_damaging(0.999) TCGA-D7-A4YV-01 14 106173866 106173866 G A IGHA1 Missense_Mutation p.P234L 0.05 deleterious(0) probably_damaging(0.998) TCGA-D7-A4YV-01 14 106311932 106311932 G T IGHD Missense_Mutation p.A27E 0.24 tolerated(0.61) possibly_damaging(0.521) TCGA-D7-A4YV-01 14 21961062 21961062 T A TOX4 Silent p.A429A 0.26 TCGA-D7-A4YV-01 14 22217797 22217797 T C TRAV5 Missense_Mutation p.S50P 0.27 tolerated(0.12) probably_damaging(0.936) TCGA-D7-A4YV-01 14 23375437 23375437 C T RBM23 Missense_Mutation p.R123H 0.17 tolerated(0.08) benign(0.064) TCGA-D7-A4YV-01 14 23746064 23746064 G A HOMEZ Nonsense_Mutation p.R125* 0.26 TCGA-D7-A4YV-01 14 24546405 24546405 G A CPNE6 Missense_Mutation p.D448N 0.16 deleterious(0.02) probably_damaging(1) TCGA-D7-A4YV-01 14 24651519 24651519 A C IPO4 Missense_Mutation p.F855V 0.14 deleterious(0.01) possibly_damaging(0.883) TCGA-D7-A4YV-01 14 25077550 25077550 G A GZMH Nonsense_Mutation p.Q42* 0.25 TCGA-D7-A4YV-01 14 33684481 33684481 G A NPAS3 Silent p.L78L 0.27 TCGA-D7-A4YV-01 14 36005056 36005057 - T INSM2 Frame_Shift_Ins p.S536* 0.21 TCGA-D7-A4YV-01 14 37969213 37969213 T A MIPOL1 Missense_Mutation p.S378T 0.30 tolerated(0.34) possibly_damaging(0.574) TCGA-D7-A4YV-01 14 42356114 42356114 G A LRFN5 Missense_Mutation p.A96T 0.27 tolerated(0.07) benign(0.055) TCGA-D7-A4YV-01 14 42360855 42360855 C T LRFN5 Silent p.H596H 0.26 TCGA-D7-A4YV-01 14 45497476 45497476 A - FAM179B Frame_Shift_Del p.N1203Ifs*6 0.25 TCGA-D7-A4YV-01 14 47530771 47530771 T - MDGA2 Frame_Shift_Del p.G403Dfs*22 0.24 TCGA-D7-A4YV-01 14 50789395 50789395 G A ATP5S Missense_Mutation p.A107T 0.29 deleterious(0) probably_damaging(0.998) TCGA-D7-A4YV-01 14 51443933 51443933 C T TRIM9 3'UTR 0.30 TCGA-D7-A4YV-01 14 55004968 55004968 G A CGRRF1 Missense_Mutation p.C289Y 0.22 deleterious(0) probably_damaging(0.999) TCGA-D7-A4YV-01 14 59930776 59930776 C T GPR135 Missense_Mutation p.R390H 0.20 deleterious(0) probably_damaging(0.999) TCGA-D7-A4YV-01 14 60619659 60619659 G A DHRS7 Missense_Mutation p.R211W 0.35 deleterious(0) possibly_damaging(0.901) TCGA-D7-A4YV-01 14 62242911 62242911 T - SNAPC1 Frame_Shift_Del p.F213Lfs*7 0.17 TCGA-D7-A4YV-01 14 65035126 65035126 A - PPP1R36 Frame_Shift_Del p.N167Tfs*12 0.22 TCGA-D7-A4YV-01 14 69520750 69520750 C T DCAF5 Missense_Mutation p.G885R 0.14 tolerated_low_confidence(0.06) possibly_damaging(0.708) TCGA-D7-A4YV-01 14 73440842 73440842 C T ZFYVE1 Missense_Mutation p.E683K 0.34 deleterious(0) probably_damaging(0.994) TCGA-D7-A4YV-01 14 75295977 75295977 C T YLPM1 Silent p.S2075S 0.26 TCGA-D7-A4YV-01 14 76045412 76045412 G A FLVCR2 Missense_Mutation p.V33I 0.38 tolerated_low_confidence(0.09) benign(0.001) TCGA-D7-A4YV-01 14 90528631 90528631 G A KCNK13 Missense_Mutation p.V28M 0.54 deleterious(0.02) benign(0.069) TCGA-D7-A4YV-01 14 95662949 95662949 T - CLMN Frame_Shift_Del p.K865Rfs*10 0.32 TCGA-D7-A4YV-01 14 99641282 99641282 C T BCL11B Missense_Mutation p.G631R 0.27 tolerated(0.79) benign(0.003) TCGA-D7-A4YV-01 14 99641913 99641913 C T BCL11B Silent p.P420P 0.24 TCGA-D7-A4YV-01 15 101833235 101833236 TC - SNRPA1 Frame_Shift_Del p.R75Nfs*6 0.17 TCGA-D7-A4YV-01 15 101938761 101938761 C T PCSK6 Missense_Mutation p.D281N 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-D7-A4YV-01 15 22997854 22997854 C T CYFIP1 Nonsense_Mutation p.R1034* 0.21 TCGA-D7-A4YV-01 15 23330960 23330960 C T HERC2P2 RNA 0.24 TCGA-D7-A4YV-01 15 23932077 23932077 C T NDN Silent p.A96A 0.21 TCGA-D7-A4YV-01 15 25333948 25333948 C T SNORD116-20 RNA 0.24 TCGA-D7-A4YV-01 15 25477424 25477424 G A SNORD115-33 3'Flank 0.29 TCGA-D7-A4YV-01 15 26866614 26866614 G T GABRB3 Missense_Mutation p.P103H 0.24 deleterious(0.04) probably_damaging(1) TCGA-D7-A4YV-01 15 31776256 31776256 G A OTUD7A Silent p.R674R 0.73 TCGA-D7-A4YV-01 15 35174732 35174732 G A AQR Nonsense_Mutation p.R1046* 0.22 TCGA-D7-A4YV-01 15 35273570 35273570 G A ZNF770 Missense_Mutation p.S689L 0.20 deleterious_low_confidence(0.02) benign(0.025) TCGA-D7-A4YV-01 15 42379564 42379564 C T PLA2G4D Silent p.T63T 0.23 TCGA-D7-A4YV-01 15 43021535 43021535 C T CDAN1 Silent p.S811S 0.23 TCGA-D7-A4YV-01 15 44066858 44066858 T G ELL3 Missense_Mutation p.E253D 0.20 tolerated(0.14) benign(0.186) TCGA-D7-A4YV-01 15 44089043 44089044 CT - SERINC4 Frame_Shift_Del p.R313Sfs*17 0.20 TCGA-D7-A4YV-01 15 44856842 44856842 A G SPG11 Missense_Mutation p.Y2352H 0.32 deleterious(0.04) probably_damaging(0.934) TCGA-D7-A4YV-01 15 45364620 45364620 T C SORD Missense_Mutation p.F298L 0.56 deleterious(0.03) benign(0.358) TCGA-D7-A4YV-01 15 45392007 45392007 C T DUOX2 Missense_Mutation p.V1090I 0.19 tolerated(1) benign(0.009) TCGA-D7-A4YV-01 15 51250726 51250726 C T AP4E1 Missense_Mutation p.T529M 0.28 tolerated(0.11) benign(0.042) TCGA-D7-A4YV-01 15 52668563 52668563 G A MYO5A Missense_Mutation p.R801W 0.06 deleterious(0) probably_damaging(0.995) TCGA-D7-A4YV-01 15 54307148 54307148 T - UNC13C Frame_Shift_Del p.F684Lfs*12 0.18 TCGA-D7-A4YV-01 15 57730401 57730401 G A CGNL1 Silent p.S68S 0.12 TCGA-D7-A4YV-01 15 59182634 59182634 C T SLTM Missense_Mutation p.R642H 0.22 deleterious(0.03) unknown(0) TCGA-D7-A4YV-01 15 59376343 59376343 C - RNF111 Frame_Shift_Del p.P782Hfs*44 0.22 TCGA-D7-A4YV-01 15 59911770 59911770 C T GCNT3 3'UTR 0.21 TCGA-D7-A4YV-01 15 65627671 65627671 C T IGDCC3 Missense_Mutation p.A215T 0.22 deleterious(0.01) probably_damaging(0.993) TCGA-D7-A4YV-01 15 66797782 66797782 T C RPL4 5'Flank 0.26 TCGA-D7-A4YV-01 15 68119726 68119726 A G SKOR1 Intron 0.27 TCGA-D7-A4YV-01 15 68466135 68466135 C T PIAS1 Silent p.D358D 0.21 TCGA-D7-A4YV-01 15 68583314 68583314 G A FEM1B Missense_Mutation p.V540I 0.30 tolerated(0.08) probably_damaging(0.979) TCGA-D7-A4YV-01 15 69329504 69329504 G A NOX5 Missense_Mutation p.R442H 0.27 tolerated(0.09) benign(0.008) TCGA-D7-A4YV-01 15 69677138 69677138 C T PAQR5 Missense_Mutation p.A101V 0.31 deleterious(0) probably_damaging(0.999) TCGA-D7-A4YV-01 15 73052857 73052857 G A ADPGK Silent p.C178C 0.18 TCGA-D7-A4YV-01 15 74281035 74281035 G A STOML1 Missense_Mutation p.R167C 0.23 deleterious(0) probably_damaging(0.979) TCGA-D7-A4YV-01 15 75091203 75091203 C T CSK Missense_Mutation p.R56C 0.20 deleterious(0.03) benign(0.044) TCGA-D7-A4YV-01 15 75499804 75499804 C - C15orf39 Frame_Shift_Del p.P474Qfs*91 0.29 TCGA-D7-A4YV-01 15 75500385 75500385 G A C15orf39 Missense_Mutation p.V666M 0.25 tolerated(0.18) benign(0.001) TCGA-D7-A4YV-01 15 79220087 79220087 C T CTSH Missense_Mutation p.G223S 0.26 tolerated(0.06) benign(0.069) TCGA-D7-A4YV-01 15 82444713 82444713 T C EFTUD1 Silent p.E694E 0.25 TCGA-D7-A4YV-01 15 91453768 91453768 G A MAN2A2 Missense_Mutation p.A539T 0.32 tolerated(0.09) benign(0.04) TCGA-D7-A4YV-01 16 10274018 10274018 G A GRIN2A Missense_Mutation p.T84M 0.25 deleterious(0) probably_damaging(0.993) TCGA-D7-A4YV-01 16 11850178 11850178 T - ZC3H7A Frame_Shift_Del p.N826Mfs*7 0.26 TCGA-D7-A4YV-01 16 15820852 15820852 G A MYH11 Silent p.A1244A 0.24 TCGA-D7-A4YV-01 16 1810419 1810419 A C MAPK8IP3 Missense_Mutation p.K447T 0.23 deleterious(0) probably_damaging(0.968) TCGA-D7-A4YV-01 16 18806821 18806821 G A ARL6IP1 Missense_Mutation p.R125C 0.21 tolerated(0.11) benign(0.012) TCGA-D7-A4YV-01 16 20548601 20548601 G A ACSM2B Silent p.S571S 0.21 TCGA-D7-A4YV-01 16 2256037 2256037 C G MLST8 5'UTR 0.16 TCGA-D7-A4YV-01 16 23676952 23676952 C T DCTN5 Silent p.R118R 0.22 TCGA-D7-A4YV-01 16 24802783 24802783 A T TNRC6A Silent p.P940P 0.17 TCGA-D7-A4YV-01 16 25239905 25239905 G A AQP8 3'UTR 0.29 TCGA-D7-A4YV-01 16 27445682 27445682 G A IL21R Missense_Mutation p.D22N 0.30 tolerated(0.61) benign(0.036) TCGA-D7-A4YV-01 16 27499592 27499592 C T GTF3C1 Missense_Mutation p.R1219Q 0.22 deleterious(0.01) benign(0.16) TCGA-D7-A4YV-01 16 27761440 27761440 G A KIAA0556 Silent p.T1053T 0.18 TCGA-D7-A4YV-01 16 28997873 28997873 C T LAT Missense_Mutation p.A144V 0.05 deleterious_low_confidence(0.02) benign(0.072) TCGA-D7-A4YV-01 16 30124114 30124114 G A GDPD3 Silent p.N61N 0.22 TCGA-D7-A4YV-01 16 3065456 3065456 C - CLDN6 Frame_Shift_Del p.S190Pfs*70 0.29 TCGA-D7-A4YV-01 16 31075642 31075642 C T ZNF668 Missense_Mutation p.A70T 0.17 tolerated(0.45) benign(0.001) TCGA-D7-A4YV-01 16 31368597 31368597 C T ITGAX Silent p.H114H 0.19 TCGA-D7-A4YV-01 16 31422475 31422475 G A ITGAD Missense_Mutation p.A479T 0.23 deleterious(0.04) benign(0.406) TCGA-D7-A4YV-01 16 31487822 31487822 C T TGFB1I1 Silent p.G303G 0.22 TCGA-D7-A4YV-01 16 47493063 47493063 C T ITFG1 Missense_Mutation p.A78T 0.14 deleterious(0.02) probably_damaging(0.981) TCGA-D7-A4YV-01 16 58073847 58073847 T C MMP15 Missense_Mutation p.V170A 0.10 deleterious(0.02) probably_damaging(0.971) TCGA-D7-A4YV-01 16 602866 602866 C T CAPN15 Missense_Mutation p.R970C 0.26 deleterious(0) probably_damaging(0.999) TCGA-D7-A4YV-01 16 67221678 67221678 C T EXOC3L1 Missense_Mutation p.V164M 0.31 tolerated(0.05) benign(0.04) TCGA-D7-A4YV-01 16 67322100 67322100 C - PLEKHG4 Frame_Shift_Del p.P1085Rfs*67 0.20 TCGA-D7-A4YV-01 16 67580399 67580399 C - FAM65A 3'UTR 0.32 TCGA-D7-A4YV-01 16 67862087 67862087 G - CENPT 3'UTR 0.22 TCGA-D7-A4YV-01 16 68405383 68405383 G A SMPD3 Silent p.V234V 0.33 TCGA-D7-A4YV-01 16 71682776 71682777 TG - PHLPP2 3'UTR 0.23 TCGA-D7-A4YV-01 16 71779166 71779166 T A AP1G1 Missense_Mutation p.D630V 0.35 tolerated(0.24) benign(0.197) TCGA-D7-A4YV-01 16 726267 726267 C A RHBDL1 Missense_Mutation p.P56T 0.60 deleterious_low_confidence(0.01) benign(0) TCGA-D7-A4YV-01 16 74752943 74752943 G - FA2H Frame_Shift_Del p.S244Afs*37 0.24 TCGA-D7-A4YV-01 16 80718950 80718950 C T CDYL2 Missense_Mutation p.S34N 0.26 deleterious(0) possibly_damaging(0.848) TCGA-D7-A4YV-01 16 820111 820111 C G MSLNL Silent p.G958G 0.36 TCGA-D7-A4YV-01 16 84214674 84214674 G - TAF1C Frame_Shift_Del p.P454Lfs*14 0.22 TCGA-D7-A4YV-01 16 84690609 84690609 G A KLHL36 Missense_Mutation p.V66M 0.23 tolerated(0.06) benign(0.218) TCGA-D7-A4YV-01 16 85121950 85121950 C T KIAA0513 3'UTR 0.13 TCGA-D7-A4YV-01 16 85814059 85814059 C T EMC8 Silent p.T133T 0.24 TCGA-D7-A4YV-01 16 87445497 87445497 C T ZCCHC14 Missense_Mutation p.A807T 0.40 tolerated(0.07) unknown(0) TCGA-D7-A4YV-01 16 89257844 89257844 G A CDH15 Missense_Mutation p.G447S 0.35 tolerated(0.14) possibly_damaging(0.744) TCGA-D7-A4YV-01 16 89341276 89341276 G A ANKRD11 Silent p.S2553S 0.22 TCGA-D7-A4YV-01 16 9000392 9000393 - T USP7 Frame_Shift_Ins p.T440Nfs*4 0.19 TCGA-D7-A4YV-01 16 918962 918962 G A LMF1 Missense_Mutation p.A504V 0.20 tolerated(0.16) benign(0.108) TCGA-D7-A4YV-01 17 10248819 10248819 C T MYH13 Missense_Mutation p.G460R 0.17 deleterious(0.01) probably_damaging(1) TCGA-D7-A4YV-01 17 10448726 10448726 G A MYH2 Missense_Mutation p.R148C 0.25 deleterious(0) probably_damaging(0.997) TCGA-D7-A4YV-01 17 10535908 10535908 C T MYH3 Missense_Mutation p.R1614Q 0.24 deleterious(0.02) benign(0.083) TCGA-D7-A4YV-01 17 13400128 13400128 T G HS3ST3A1 Missense_Mutation p.M203L 0.14 deleterious(0) benign(0.177) TCGA-D7-A4YV-01 17 16012111 16012111 T A NCOR1 Missense_Mutation p.E724V 0.34 probably_damaging(0.996) TCGA-D7-A4YV-01 17 16285784 16285785 - C UBB Frame_Shift_Ins p.D191Rfs*20 0.25 TCGA-D7-A4YV-01 17 18042911 18042911 C T MYO15A Missense_Mutation p.R1733W 0.23 unknown(0) TCGA-D7-A4YV-01 17 18220410 18220410 A C SMCR8 Missense_Mutation p.E436A 0.17 tolerated(0.26) benign(0.005) TCGA-D7-A4YV-01 17 20135577 20135577 A T SPECC1 Missense_Mutation p.D737V 0.24 deleterious(0) probably_damaging(0.964) TCGA-D7-A4YV-01 17 2232416 2232417 - A TSR1 Intron 0.23 TCGA-D7-A4YV-01 17 26851931 26851931 G T FOXN1 Missense_Mutation p.E178D 0.28 deleterious_low_confidence(0.03) benign(0.044) TCGA-D7-A4YV-01 17 27613259 27613259 T C NUFIP2 Missense_Mutation p.T585A 0.24 tolerated(1) benign(0.001) TCGA-D7-A4YV-01 17 27938981 27938981 C T ANKRD13B Missense_Mutation p.R353C 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-D7-A4YV-01 17 29226569 29226570 - T TEFM Frame_Shift_Ins p.T234Nfs*30 0.22 TCGA-D7-A4YV-01 17 30348872 30348872 G A LRRC37B Missense_Mutation p.S236N 0.04 tolerated(0.35) probably_damaging(0.961) TCGA-D7-A4YV-01 17 33330096 33330096 C T LIG3 Intron 0.30 TCGA-D7-A4YV-01 17 33690288 33690288 G A SLFN11 Missense_Mutation p.S180L 0.21 tolerated(0.31) benign(0.006) TCGA-D7-A4YV-01 17 35300395 35300395 C - LHX1 Frame_Shift_Del p.E399Kfs*2 0.15 TCGA-D7-A4YV-01 17 3599322 3599322 C G P2RX5 5'UTR 0.18 TCGA-D7-A4YV-01 17 36925808 36925808 C T PIP4K2B 3'UTR 0.20 TCGA-D7-A4YV-01 17 37921981 37921981 C T IKZF3 3'UTR 0.33 TCGA-D7-A4YV-01 17 38296715 38296715 G A CASC3 5'UTR 0.29 TCGA-D7-A4YV-01 17 39020063 39020063 G A KRT12 Silent p.D287D 0.19 TCGA-D7-A4YV-01 17 39092801 39092801 C T KRT23 Missense_Mutation p.G19R 0.20 tolerated(0.08) benign(0.04) TCGA-D7-A4YV-01 17 40475061 40475063 CTT - STAT3 In_Frame_Del p.E616del 0.08 TCGA-D7-A4YV-01 17 40721266 40721266 G A MLX Silent p.Q161Q 0.21 TCGA-D7-A4YV-01 17 40839042 40839042 G A CNTNAP1 Missense_Mutation p.R341H 0.23 deleterious(0) benign(0.247) TCGA-D7-A4YV-01 17 43008979 43008979 C T KIF18B Missense_Mutation p.R503H 0.07 tolerated(0.66) benign(0.002) TCGA-D7-A4YV-01 17 43227526 43227531 GGAGCT - HEXIM1 In_Frame_Del p.E328_L329del 0.10 TCGA-D7-A4YV-01 17 45056238 45056238 C T RPRML Missense_Mutation p.A46T 0.38 tolerated(0.39) benign(0) TCGA-D7-A4YV-01 17 4585839 4585839 C A PELP1 Missense_Mutation p.K200N 0.29 probably_damaging(0.999) TCGA-D7-A4YV-01 17 46622001 46622002 - G HOXB2 Frame_Shift_Ins p.A92Gfs*74 0.24 TCGA-D7-A4YV-01 17 47014454 47014454 C T SNF8 Missense_Mutation p.V93M 0.26 tolerated(0.18) benign(0.416) TCGA-D7-A4YV-01 17 4722104 4722104 G A PLD2 Missense_Mutation p.R720H 0.27 deleterious(0) probably_damaging(0.985) TCGA-D7-A4YV-01 17 4883437 4883438 - C CAMTA2 Frame_Shift_Ins p.Q417Afs*54 0.25 TCGA-D7-A4YV-01 17 49098699 49098699 C T SPAG9 Missense_Mutation p.G271R 0.32 deleterious(0.02) benign(0.02) TCGA-D7-A4YV-01 17 50235179 50235179 C T CA10 5'UTR 0.28 TCGA-D7-A4YV-01 17 5291184 5291184 G A NUP88 Missense_Mutation p.L562F 0.14 tolerated(0.27) benign(0.308) TCGA-D7-A4YV-01 17 54672075 54672087 TGGGCAGCCGCTT - NOG Frame_Shift_Del p.S166Rfs*4 0.19 TCGA-D7-A4YV-01 17 55019433 55019433 G A COIL Missense_Mutation p.A537V 0.23 tolerated(0.13) benign(0.108) TCGA-D7-A4YV-01 17 56233062 56233062 A G OR4D1 Missense_Mutation p.Q183R 0.26 tolerated(0.15) probably_damaging(0.911) TCGA-D7-A4YV-01 17 56663303 56663303 C G TEX14 Missense_Mutation p.E983Q 0.27 tolerated(0.17) benign(0.046) TCGA-D7-A4YV-01 17 57774695 57774695 T A PTRH2 3'UTR 0.21 TCGA-D7-A4YV-01 17 59763509 59763509 G A BRIP1 Missense_Mutation p.R865W 0.27 deleterious(0) probably_damaging(1) TCGA-D7-A4YV-01 17 59949813 59949813 G - INTS2 Frame_Shift_Del p.P872Hfs*2 0.20 TCGA-D7-A4YV-01 17 61497894 61497894 C - TANC2 Frame_Shift_Del p.P1519Lfs*33 0.16 TCGA-D7-A4YV-01 17 61574527 61574527 G A ACE Missense_Mutation p.G1241S 0.17 tolerated(0.39) benign(0.006) TCGA-D7-A4YV-01 17 62892219 62892219 G T LRRC37A3 Missense_Mutation p.P386H 0.10 deleterious(0.03) possibly_damaging(0.894) TCGA-D7-A4YV-01 17 63532585 63532585 C - AXIN2 Frame_Shift_Del p.G665Afs*24 0.20 TCGA-D7-A4YV-01 17 65971983 65971985 TAC - BPTF In_Frame_Del p.Y2880del 0.20 TCGA-D7-A4YV-01 17 66925743 66925743 T C ABCA8 Missense_Mutation p.M300V 0.13 tolerated(1) benign(0.006) TCGA-D7-A4YV-01 17 67041434 67041434 T A ABCA9 Missense_Mutation p.E116D 0.13 tolerated(0.11) benign(0.02) TCGA-D7-A4YV-01 17 6930927 6930927 G - BCL6B Frame_Shift_Del p.*480Sfs*2 0.22 TCGA-D7-A4YV-01 17 694859 694859 G T RNMTL1 Missense_Mutation p.W271C 0.27 deleterious(0) probably_damaging(1) TCGA-D7-A4YV-01 17 71429901 71429901 C - SDK2 Frame_Shift_Del p.A428Rfs*63 0.19 TCGA-D7-A4YV-01 17 73274374 73274374 T C SLC25A19 Missense_Mutation p.S168G 0.30 tolerated(0.07) benign(0.003) TCGA-D7-A4YV-01 17 7399624 7399624 C T POLR2A Missense_Mutation p.R108C 0.19 probably_damaging(0.999) TCGA-D7-A4YV-01 17 74019498 74019498 T C EVPL Missense_Mutation p.I119V 0.26 tolerated(0.53) benign(0.257) TCGA-D7-A4YV-01 17 7572786 7572786 G A TP53 3'UTR 0.18 TCGA-D7-A4YV-01 17 76525611 76525611 G A DNAH17 Silent p.I1150I 0.23 TCGA-D7-A4YV-01 17 77768605 77768608 GAGG - CBX8 Frame_Shift_Del p.L333Sfs*22 0.28 TCGA-D7-A4YV-01 17 7814849 7814849 C T CHD3 Silent p.D2042D 0.05 TCGA-D7-A4YV-01 17 78156499 78156499 G A CARD14 Missense_Mutation p.A87T 0.29 deleterious(0) probably_damaging(1) TCGA-D7-A4YV-01 17 80049217 80049217 G A FASN Missense_Mutation p.A458V 0.25 tolerated(0.11) benign(0.369) TCGA-D7-A4YV-01 17 80559219 80559219 C T FOXK2 Silent p.S609S 0.15 TCGA-D7-A4YV-01 17 8243371 8243371 T C ODF4 Translation_Start_Site p.M1? 0.17 deleterious_low_confidence(0.01) benign(0.402) TCGA-D7-A4YV-01 17 8451698 8451698 T C MYH10 Silent p.L364L 0.24 TCGA-D7-A4YV-01 18 12325604 12325604 G A TUBB6 Silent p.P272P 0.23 TCGA-D7-A4YV-01 18 12325851 12325851 G A TUBB6 Missense_Mutation p.D355N 0.21 deleterious_low_confidence(0.05) benign(0.005) TCGA-D7-A4YV-01 18 14105730 14105730 C T ZNF519 Missense_Mutation p.R270H 0.20 deleterious(0.01) benign(0.01) TCGA-D7-A4YV-01 18 21114441 21114441 G A NPC1 Missense_Mutation p.A1187V 0.22 tolerated(0.12) probably_damaging(0.993) TCGA-D7-A4YV-01 18 22057071 22057071 G A HRH4 Missense_Mutation p.A240T 0.22 tolerated(0.49) benign(0.021) TCGA-D7-A4YV-01 18 24722666 24722666 T G CHST9 Missense_Mutation p.E36D 0.29 tolerated(0.11) possibly_damaging(0.725) TCGA-D7-A4YV-01 18 30349862 30349862 G - KLHL14 Frame_Shift_Del p.V232Wfs*30 0.16 TCGA-D7-A4YV-01 18 30926291 30926291 C T CCDC178 Missense_Mutation p.R181Q 0.24 deleterious(0) probably_damaging(1) TCGA-D7-A4YV-01 18 31319986 31319986 A - ASXL3 Frame_Shift_Del p.V876Cfs*59 0.18 TCGA-D7-A4YV-01 18 43459143 43459143 A - EPG5 Frame_Shift_Del p.Y1902Ifs*26 0.16 TCGA-D7-A4YV-01 18 45567085 45567085 C - ZBTB7C Frame_Shift_Del p.D132Tfs*90 0.30 TCGA-D7-A4YV-01 18 59806256 59806256 C A PIGN Missense_Mutation p.S359I 0.21 deleterious(0) possibly_damaging(0.769) TCGA-D7-A4YV-01 18 677824 677824 G A ENOSF1 Nonsense_Mutation p.Q330* 0.21 TCGA-D7-A4YV-01 18 7049225 7049225 C T LAMA1 Missense_Mutation p.S207N 0.19 deleterious(0) probably_damaging(0.948) TCGA-D7-A4YV-01 18 8370957 8370957 A G PTPRM Missense_Mutation p.T1042A 0.22 deleterious(0) benign(0.29) TCGA-D7-A4YV-01 19 10087919 10087919 C T COL5A3 Missense_Mutation p.D1092N 0.30 possibly_damaging(0.679) TCGA-D7-A4YV-01 19 1063545 1063545 C T ABCA7 Silent p.T1905T 0.16 TCGA-D7-A4YV-01 19 10940910 10940910 C T DNM2 Missense_Mutation p.A800V 0.19 tolerated_low_confidence(0.29) benign(0) TCGA-D7-A4YV-01 19 14521142 14521142 C T DDX39A Missense_Mutation p.M206I 0.21 deleterious(0.02) possibly_damaging(0.533) TCGA-D7-A4YV-01 19 14561788 14561788 C T PKN1 Silent p.P285P 0.25 TCGA-D7-A4YV-01 19 1460271 1460271 C T APC2 Silent p.Y465Y 0.35 TCGA-D7-A4YV-01 19 14675085 14675085 C T TECR Missense_Mutation p.R159C 0.24 tolerated(0.07) benign(0.126) TCGA-D7-A4YV-01 19 1483747 1483747 G A PCSK4 Silent p.Y431Y 0.23 TCGA-D7-A4YV-01 19 14876168 14876168 T G EMR2 Missense_Mutation p.R290S 0.22 deleterious(0.04) benign(0.096) TCGA-D7-A4YV-01 19 1584646 1584646 C - MBD3 Frame_Shift_Del p.V101Cfs*12 0.16 TCGA-D7-A4YV-01 19 15917904 15917904 T - OR10H1 Frame_Shift_Del p.N315Mfs*2 0.22 TCGA-D7-A4YV-01 19 16591434 16591434 G A CALR3 Silent p.G334G 0.31 TCGA-D7-A4YV-01 19 17316104 17316104 C T MYO9B Missense_Mutation p.H1675Y 0.20 tolerated(0.1) benign(0.003) TCGA-D7-A4YV-01 19 17679366 17679366 C T COLGALT1 Missense_Mutation p.R225C 0.21 deleterious(0) possibly_damaging(0.886) TCGA-D7-A4YV-01 19 19453672 19453672 A G MAU2 Missense_Mutation p.K324E 0.05 deleterious(0.01) probably_damaging(0.99) TCGA-D7-A4YV-01 19 19655136 19655136 C T CILP2 Silent p.A594A 0.25 TCGA-D7-A4YV-01 19 23926579 23926579 T G ZNF681 Missense_Mutation p.Q591H 0.16 deleterious(0) probably_damaging(0.934) TCGA-D7-A4YV-01 19 2807737 2807737 G A THOP1 Missense_Mutation p.R395Q 0.30 tolerated(0.77) benign(0.001) TCGA-D7-A4YV-01 19 3009578 3009578 G - TLE2 Frame_Shift_Del p.Q379Rfs*13 0.17 TCGA-D7-A4YV-01 19 3207443 3207443 C T NCLN Silent p.L536L 0.21 TCGA-D7-A4YV-01 19 3590055 3590055 C T GIPC3 Missense_Mutation p.T269M 0.35 tolerated(0.29) benign(0.01) TCGA-D7-A4YV-01 19 36045880 36045880 C T ATP4A Missense_Mutation p.V809M 0.30 deleterious(0.04) possibly_damaging(0.889) TCGA-D7-A4YV-01 19 36431206 36431206 C T LRFN3 Silent p.C293C 0.25 TCGA-D7-A4YV-01 19 37440779 37440779 C T ZNF568 Nonsense_Mutation p.R242* 0.18 TCGA-D7-A4YV-01 19 38655373 38655373 C T SIPA1L3 Silent p.G1345G 0.28 TCGA-D7-A4YV-01 19 38877282 38877282 C T GGN Missense_Mutation p.R207H 0.35 tolerated_low_confidence(0.05) unknown(0) TCGA-D7-A4YV-01 19 38933087 38933087 C A RYR1 Silent p.G88G 0.06 TCGA-D7-A4YV-01 19 38951153 38951153 C T RYR1 Silent p.P833P 0.28 TCGA-D7-A4YV-01 19 38956958 38956958 G A RYR1 Missense_Mutation p.S1033N 0.17 possibly_damaging(0.561) TCGA-D7-A4YV-01 19 3964788 3964788 G A DAPK3 Silent p.D88D 0.21 TCGA-D7-A4YV-01 19 3964830 3964830 G - DAPK3 Frame_Shift_Del p.N75Tfs*37 0.14 TCGA-D7-A4YV-01 19 3982258 3982260 CTT - EEF2 In_Frame_Del p.K259del 0.20 TCGA-D7-A4YV-01 19 40363174 40363176 CAT - FCGBP In_Frame_Del p.D4965del 0.21 TCGA-D7-A4YV-01 19 40421158 40421158 G A FCGBP Silent p.R921R 0.18 TCGA-D7-A4YV-01 19 40487259 40487259 C T PSMC4 3'UTR 0.36 TCGA-D7-A4YV-01 19 40718777 40718777 C T MAP3K10 Missense_Mutation p.R540C 0.39 deleterious(0.01) probably_damaging(0.997) TCGA-D7-A4YV-01 19 41454964 41454964 G A AC092071.1 3'Flank 0.27 TCGA-D7-A4YV-01 19 42406062 42406062 C T ARHGEF1 Silent p.H446H 0.31 TCGA-D7-A4YV-01 19 42583217 42583217 C T ZNF574 Silent p.P153P 0.24 TCGA-D7-A4YV-01 19 42863307 42863307 G - MEGF8 Frame_Shift_Del p.R1736Afs*68 0.31 TCGA-D7-A4YV-01 19 44223329 44223329 G A IRGC Missense_Mutation p.V207M 0.23 tolerated(0.18) benign(0.238) TCGA-D7-A4YV-01 19 4446914 4446914 G A UBXN6 Missense_Mutation p.R207C 0.12 deleterious(0) probably_damaging(0.996) TCGA-D7-A4YV-01 19 44470166 44470166 G A ZNF221 Missense_Mutation p.R171H 0.19 tolerated(0.1) benign(0.002) TCGA-D7-A4YV-01 19 45029181 45029181 G T CEACAM20 RNA 0.22 TCGA-D7-A4YV-01 19 45207422 45207422 G A CEACAM16 Missense_Mutation p.V173I 0.36 tolerated(0.88) benign(0.007) TCGA-D7-A4YV-01 19 45209019 45209019 G A CEACAM16 Missense_Mutation p.G274D 0.25 tolerated(0.84) benign(0.037) TCGA-D7-A4YV-01 19 45412333 45412333 G A APOE Silent p.K260K 0.44 TCGA-D7-A4YV-01 19 45655517 45655517 G A NKPD1 Silent p.G726G 0.26 TCGA-D7-A4YV-01 19 45997939 45997939 C T RTN2 Missense_Mutation p.R135H 0.25 tolerated_low_confidence(0.29) benign(0.006) TCGA-D7-A4YV-01 19 46216144 46216144 C T FBXO46 Missense_Mutation p.A204T 0.30 tolerated(0.31) probably_damaging(0.982) TCGA-D7-A4YV-01 19 47177820 47177820 T C PRKD2 Missense_Mutation p.H866R 0.29 tolerated_low_confidence(0.56) benign(0.073) TCGA-D7-A4YV-01 19 48220236 48220236 C T EHD2 Missense_Mutation p.R123C 0.25 deleterious(0) probably_damaging(0.953) TCGA-D7-A4YV-01 19 49253904 49253904 C T FUT1 Missense_Mutation p.R212H 0.28 tolerated(0.53) benign(0.016) TCGA-D7-A4YV-01 19 49260233 49260233 G A FGF21 Missense_Mutation p.V96I 0.23 tolerated(0.1) benign(0.065) TCGA-D7-A4YV-01 19 49300467 49300467 G A BCAT2 Silent p.Y273Y 0.11 TCGA-D7-A4YV-01 19 50099902 50099902 G A PRR12 Silent p.T770T 0.34 TCGA-D7-A4YV-01 19 50912024 50912024 C T POLD1 Intron 0.25 TCGA-D7-A4YV-01 19 51169601 51169601 A G SHANK1 Silent p.S1872S 0.35 TCGA-D7-A4YV-01 19 51296990 51296990 G A ACPT Missense_Mutation p.R232Q 0.18 tolerated(1) benign(0.007) TCGA-D7-A4YV-01 19 52002870 52002870 C T SIGLEC12 Silent p.T303T 0.28 TCGA-D7-A4YV-01 19 5220166 5220166 C A PTPRS Splice_Site p.X1184_splice 0.30 TCGA-D7-A4YV-01 19 52271988 52271988 G A FPR2 Missense_Mutation p.R26Q 0.34 tolerated(0.57) benign(0.002) TCGA-D7-A4YV-01 19 52869924 52869924 T C ZNF610 Silent p.N431N 0.21 TCGA-D7-A4YV-01 19 53854380 53854380 T C ZNF845 Missense_Mutation p.L151P 0.25 deleterious(0.02) probably_damaging(0.949) TCGA-D7-A4YV-01 19 54312988 54312988 G A NLRP12 Missense_Mutation p.A642V 0.29 tolerated(0.18) possibly_damaging(0.521) TCGA-D7-A4YV-01 19 55966693 55966693 G A ISOC2 Missense_Mutation p.T134M 0.27 deleterious(0.02) probably_damaging(0.998) TCGA-D7-A4YV-01 19 55995151 55995151 C T ZNF628 Missense_Mutation p.T864M 0.24 deleterious(0.01) unknown(0) TCGA-D7-A4YV-01 19 56904840 56904840 G A ZNF582 5'UTR 0.18 TCGA-D7-A4YV-01 19 57802724 57802724 G A ZNF460 Missense_Mutation p.R272Q 0.28 deleterious(0.01) probably_damaging(0.998) TCGA-D7-A4YV-01 19 58565161 58565161 C T ZSCAN1 Silent p.P323P 0.22 TCGA-D7-A4YV-01 19 58806666 58806666 C T ZNF8 Nonsense_Mutation p.R498* 0.23 TCGA-D7-A4YV-01 19 58904472 58904472 G A RPS5 Missense_Mutation p.G80S 0.15 deleterious(0.02) probably_damaging(0.967) TCGA-D7-A4YV-01 19 58945448 58945448 C T ZNF132 Missense_Mutation p.G455R 0.24 deleterious(0.01) probably_damaging(0.993) TCGA-D7-A4YV-01 19 59082434 59082434 C A MZF1 Missense_Mutation p.R108L 0.39 tolerated(0.08) benign(0.075) TCGA-D7-A4YV-01 19 651816 651816 C T RNF126 Missense_Mutation p.G80R 0.21 deleterious(0) probably_damaging(0.951) TCGA-D7-A4YV-01 19 6665011 6665011 C T TNFSF14 Missense_Mutation p.V217I 0.23 deleterious(0.04) probably_damaging(0.954) TCGA-D7-A4YV-01 19 6732382 6732382 G A GPR108 Silent p.G339G 0.30 TCGA-D7-A4YV-01 19 7676686 7676687 - C CAMSAP3 Frame_Shift_Ins p.R466Afs*17 0.35 TCGA-D7-A4YV-01 19 7999073 7999073 G T TIMM44 Silent p.G148G 0.34 TCGA-D7-A4YV-01 19 805125 805125 G A PTBP1 Missense_Mutation p.R277H 0.22 deleterious(0.03) benign(0.053) TCGA-D7-A4YV-01 19 8056648 8056648 C T ELAVL1 Missense_Mutation p.G18R 0.25 tolerated(0.26) benign(0.013) TCGA-D7-A4YV-01 19 855752 855752 C T ELANE Silent p.N185N 0.21 TCGA-D7-A4YV-01 19 8841803 8841803 G A OR2Z1 Missense_Mutation p.R138H 0.04 tolerated(0.27) benign(0.003) TCGA-D7-A4YV-01 19 9965006 9965006 G A OLFM2 Silent p.D407D 0.26 TCGA-D7-A4YV-01 19 9965191 9965191 C T OLFM2 Missense_Mutation p.V346M 0.29 deleterious(0.05) possibly_damaging(0.788) TCGA-D7-A4YV-01 1 10032227 10032227 G A NMNAT1 Silent p.K32K 0.25 TCGA-D7-A4YV-01 1 100330092 100330093 - A AGL Frame_Shift_Ins p.E207Gfs*9 0.15 TCGA-D7-A4YV-01 1 110033760 110033760 C T ATXN7L2 Silent p.C525C 0.16 TCGA-D7-A4YV-01 1 110086193 110086193 C A GPR61 Silent p.S183S 0.05 TCGA-D7-A4YV-01 1 110765765 110765765 C T KCNC4 Silent p.G286G 0.27 TCGA-D7-A4YV-01 1 110882916 110882916 G T RBM15 Missense_Mutation p.G297C 0.24 deleterious(0.01) possibly_damaging(0.887) TCGA-D7-A4YV-01 1 113052050 113052050 G A WNT2B Missense_Mutation p.V56I 0.34 tolerated(0.07) benign(0.013) TCGA-D7-A4YV-01 1 120493447 120493447 C A NOTCH2 Missense_Mutation p.Q793H 0.26 deleterious(0.02) benign(0.332) TCGA-D7-A4YV-01 1 12569085 12569085 G A VPS13D 3'UTR 0.23 TCGA-D7-A4YV-01 1 12853598 12853598 T C PRAMEF1 Silent p.H74H 0.23 TCGA-D7-A4YV-01 1 12908041 12908041 C A HNRNPCL1 Missense_Mutation p.E34D 0.09 deleterious(0) possibly_damaging(0.673) TCGA-D7-A4YV-01 1 144922001 144922001 T A PDE4DIP Missense_Mutation p.D343V 0.11 deleterious(0) possibly_damaging(0.777) TCGA-D7-A4YV-01 1 145415461 145415461 G A HFE2 Missense_Mutation p.A94T 0.18 deleterious(0) probably_damaging(0.939) TCGA-D7-A4YV-01 1 150784509 150784509 G - ARNT Frame_Shift_Del p.S788Qfs*21 0.22 TCGA-D7-A4YV-01 1 151753980 151753980 G A TDRKH Missense_Mutation p.R70W 0.25 tolerated(0.09) benign(0.262) TCGA-D7-A4YV-01 1 151774063 151774063 C T LINGO4 Missense_Mutation p.R373H 0.29 tolerated(0.11) benign(0.02) TCGA-D7-A4YV-01 1 152081442 152081442 G A TCHH Silent p.R1417R 0.21 TCGA-D7-A4YV-01 1 152882397 152882397 C - IVL Frame_Shift_Del p.P43Hfs*22 0.21 TCGA-D7-A4YV-01 1 155291940 155291940 C A RUSC1 Missense_Mutation p.L126I 0.19 deleterious_low_confidence(0.02) benign(0.219) TCGA-D7-A4YV-01 1 155630355 155630355 C T YY1AP1 Missense_Mutation p.R587Q 0.21 tolerated_low_confidence(0.5) benign(0.022) TCGA-D7-A4YV-01 1 155717778 155717778 G T GON4L 3'Flank 0.24 TCGA-D7-A4YV-01 1 156639679 156639679 G T NES Missense_Mutation p.A1434D 0.33 deleterious(0) possibly_damaging(0.86) TCGA-D7-A4YV-01 1 157660199 157660199 G A FCRL3 Silent p.H512H 0.17 TCGA-D7-A4YV-01 1 157665355 157665355 G C FCRL3 Missense_Mutation p.A392G 0.24 deleterious(0.02) possibly_damaging(0.794) TCGA-D7-A4YV-01 1 158647573 158647573 G T SPTA1 Silent p.T288T 0.26 TCGA-D7-A4YV-01 1 158813189 158813189 G T MNDA Missense_Mutation p.R129M 0.17 tolerated(0.07) benign(0.254) TCGA-D7-A4YV-01 1 158914815 158914815 A G PYHIN1 Missense_Mutation p.S448G 0.06 deleterious(0.02) possibly_damaging(0.483) TCGA-D7-A4YV-01 1 159174659 159174659 G A DARC 5'Flank 0.33 TCGA-D7-A4YV-01 1 159900491 159900491 C A IGSF9 Missense_Mutation p.A602S 0.17 tolerated(0.55) benign(0.002) TCGA-D7-A4YV-01 1 161487843 161487843 G A FCGR2A Missense_Mutation p.G287S 0.17 tolerated(0.15) probably_damaging(0.987) TCGA-D7-A4YV-01 1 162372593 162372593 C A SH2D1B Splice_Site p.X45_splice 0.31 TCGA-D7-A4YV-01 1 16378297 16378297 G - CLCNKB Frame_Shift_Del p.Y466Mfs*13 0.24 TCGA-D7-A4YV-01 1 167024308 167024308 G A GPA33 Silent p.G244G 0.20 TCGA-D7-A4YV-01 1 169446634 169446634 C T SLC19A2 Missense_Mutation p.S189N 0.25 tolerated(0.21) benign(0.012) TCGA-D7-A4YV-01 1 171504578 171504578 G A PRRC2C Missense_Mutation p.V627I 0.22 unknown(0) TCGA-D7-A4YV-01 1 172411046 172411046 G A PIGC Silent p.A239A 0.22 TCGA-D7-A4YV-01 1 181620522 181620522 C A CACNA1E Missense_Mutation p.L334I 0.05 deleterious(0) possibly_damaging(0.694) TCGA-D7-A4YV-01 1 182353567 182353567 G A GLUL Silent p.G365G 0.29 TCGA-D7-A4YV-01 1 182856560 182856560 C T DHX9 Silent p.G1268G 0.34 TCGA-D7-A4YV-01 1 186030998 186030998 G A HMCN1 Missense_Mutation p.R2443Q 0.15 probably_damaging(0.993) TCGA-D7-A4YV-01 1 186105833 186105833 C T HMCN1 Missense_Mutation p.T4449I 0.15 probably_damaging(0.998) TCGA-D7-A4YV-01 1 186310500 186310500 G A TPR Nonsense_Mutation p.Q1258* 0.10 TCGA-D7-A4YV-01 1 19166144 19166144 C T TAS1R2 Silent p.T823T 0.27 TCGA-D7-A4YV-01 1 1919973 1919973 C A C1orf222 Nonsense_Mutation p.E83* 0.23 TCGA-D7-A4YV-01 1 193066820 193066820 T - GLRX2 Frame_Shift_Del p.K86Sfs*6 0.23 TCGA-D7-A4YV-01 1 19423058 19423058 C T UBR4 Missense_Mutation p.A4493T 0.22 benign(0.001) TCGA-D7-A4YV-01 1 19992867 19992867 C A HTR6 Silent p.T207T 0.25 TCGA-D7-A4YV-01 1 201286806 201286806 G T PKP1 Missense_Mutation p.S318I 0.29 deleterious(0) benign(0.015) TCGA-D7-A4YV-01 1 201351409 201351409 G A LAD1 Nonsense_Mutation p.Q507* 0.18 TCGA-D7-A4YV-01 1 204234135 204234135 G - PLEKHA6 Frame_Shift_Del p.L106Sfs*2 0.21 TCGA-D7-A4YV-01 1 205138544 205138544 A G DSTYK Silent p.D357D 0.22 TCGA-D7-A4YV-01 1 214542949 214542949 G C PTPN14 Missense_Mutation p.T1041S 0.22 tolerated(0.08) possibly_damaging(0.636) TCGA-D7-A4YV-01 1 214638021 214638021 T C PTPN14 Silent p.T42T 0.32 TCGA-D7-A4YV-01 1 220791774 220791774 C T MARK1 Silent p.P225P 0.25 TCGA-D7-A4YV-01 1 223283695 223283695 A - TLR5 3'UTR 0.46 TCGA-D7-A4YV-01 1 225152272 225152272 C T DNAH14 Silent p.Y153Y 0.20 TCGA-D7-A4YV-01 1 226187014 226187014 G A SDE2 5'UTR 0.21 TCGA-D7-A4YV-01 1 228404781 228404781 G A OBSCN Silent p.A815A 0.34 TCGA-D7-A4YV-01 1 228476477 228476477 G A OBSCN Silent p.R3838R 0.38 TCGA-D7-A4YV-01 1 229653865 229653865 T - ABCB10 3'UTR 0.38 TCGA-D7-A4YV-01 1 231502214 231502214 T - EGLN1 Frame_Shift_Del p.G409Vfs*2 0.12 TCGA-D7-A4YV-01 1 2318864 2318864 G A MORN1 Missense_Mutation p.R118W 0.16 deleterious(0) probably_damaging(0.998) TCGA-D7-A4YV-01 1 232629283 232629283 C A SIPA1L2 Missense_Mutation p.R536M 0.22 deleterious(0) probably_damaging(0.998) TCGA-D7-A4YV-01 1 233514889 233514890 - C MLK4 Frame_Shift_Ins p.Q715Pfs*30 0.21 TCGA-D7-A4YV-01 1 235301432 235301434 CTC - RBM34 In_Frame_Del p.E253del 0.25 TCGA-D7-A4YV-01 1 236755385 236755385 A T HEATR1 Missense_Mutation p.L444I 0.21 tolerated(0.07) possibly_damaging(0.831) TCGA-D7-A4YV-01 1 247921546 247921546 G A OR1C1 Missense_Mutation p.L55F 0.26 deleterious(0) probably_damaging(0.986) TCGA-D7-A4YV-01 1 248202124 248202124 G A OR2L2 Silent p.T185T 0.19 TCGA-D7-A4YV-01 1 26610635 26610635 G T UBXN11 Missense_Mutation p.Q359K 0.24 deleterious(0.03) benign(0.021) TCGA-D7-A4YV-01 1 27105931 27105931 G - ARID1A Frame_Shift_Del p.D1850Tfs*33 0.34 TCGA-D7-A4YV-01 1 27180338 27180338 C T ZDHHC18 3'UTR 0.24 TCGA-D7-A4YV-01 1 27680355 27680356 CT - SYTL1 3'UTR 0.30 TCGA-D7-A4YV-01 1 32207741 32207741 G A BAI2 Missense_Mutation p.R444W 0.27 deleterious(0) probably_damaging(0.997) TCGA-D7-A4YV-01 1 34238278 34238278 C T CSMD2 Missense_Mutation p.G540S 0.26 deleterious(0.01) probably_damaging(0.993) TCGA-D7-A4YV-01 1 34401395 34401395 G A CSMD2 Silent p.S186S 0.30 TCGA-D7-A4YV-01 1 40758422 40758422 T - ZMPSTE24 3'UTR 0.45 TCGA-D7-A4YV-01 1 40775807 40775807 G A COL9A2 Silent p.G256G 0.32 TCGA-D7-A4YV-01 1 42045430 42045430 G A HIVEP3 Missense_Mutation p.S1680F 0.22 probably_damaging(0.998) TCGA-D7-A4YV-01 1 42620422 42620422 C - GUCA2B Frame_Shift_Del p.R56Afs*37 0.26 TCGA-D7-A4YV-01 1 43317170 43317170 G A ZNF691 Missense_Mutation p.A212T 0.23 tolerated(0.4) benign(0.006) TCGA-D7-A4YV-01 1 44069448 44069448 G A PTPRF Silent p.Q875Q 0.17 TCGA-D7-A4YV-01 1 44443535 44443546 TCATATATCTCT - ATP6V0B Intron 0.43 TCGA-D7-A4YV-01 1 44595246 44595246 C - KLF17 Frame_Shift_Del p.Q103Kfs*9 0.24 TCGA-D7-A4YV-01 1 45120567 45120567 G A TMEM53 Silent p.A166A 0.24 TCGA-D7-A4YV-01 1 45292983 45292983 T C PTCH2 Splice_Site p.X791_splice 0.23 TCGA-D7-A4YV-01 1 46744526 46744526 T C LRRC41 3'UTR 0.24 TCGA-D7-A4YV-01 1 48701406 48701406 C T SLC5A9 Missense_Mutation p.R408W 0.23 deleterious(0) possibly_damaging(0.595) TCGA-D7-A4YV-01 1 54060252 54060253 - G GLIS1 Frame_Shift_Ins p.L109Sfs*23 0.25 TCGA-D7-A4YV-01 1 65852598 65852598 C T DNAJC6 Missense_Mutation p.R367W 0.23 deleterious(0) probably_damaging(0.994) TCGA-D7-A4YV-01 1 67724745 67724745 T C IL23R Silent p.I608I 0.22 TCGA-D7-A4YV-01 1 70820683 70820683 C T HHLA3 Missense_Mutation p.P17S 0.09 deleterious_low_confidence(0.04) possibly_damaging(0.803) TCGA-D7-A4YV-01 1 74648472 74648472 C A LRRIQ3 Missense_Mutation p.G108V 0.27 deleterious(0) possibly_damaging(0.833) TCGA-D7-A4YV-01 1 77333317 77333317 C T ST6GALNAC5 5'UTR 0.18 TCGA-D7-A4YV-01 1 85136860 85136860 C A SSX2IP Nonsense_Mutation p.E15* 0.16 TCGA-D7-A4YV-01 1 87025638 87025638 G A CLCA4 Silent p.T61T 0.21 TCGA-D7-A4YV-01 1 87043755 87043755 G A CLCA4 Missense_Mutation p.G708R 0.21 deleterious(0) probably_damaging(0.965) TCGA-D7-A4YV-01 1 9118284 9118284 G A SLC2A5 Missense_Mutation p.A20V 0.28 tolerated(0.44) benign(0.095) TCGA-D7-A4YV-01 1 91781980 91781980 T - HFM1 Frame_Shift_Del p.I956* 0.27 TCGA-D7-A4YV-01 1 92568203 92568203 G T BTBD8 Missense_Mutation p.R174I 0.18 tolerated(0.24) benign(0.032) TCGA-D7-A4YV-01 1 94520763 94520763 C A ABCA4 Missense_Mutation p.G831W 0.31 deleterious(0) probably_damaging(0.996) TCGA-D7-A4YV-01 1 99771242 99771242 G A LPPR4 Missense_Mutation p.G323D 0.06 deleterious(0.01) probably_damaging(1) TCGA-D7-A4YV-01 20 23066072 23066072 G A CD93 Missense_Mutation p.S253L 0.33 deleterious(0.03) benign(0.023) TCGA-D7-A4YV-01 20 23350249 23350249 C T GZF1 Silent p.C552C 0.31 TCGA-D7-A4YV-01 20 23858244 23858244 C A CST5 Silent p.G81G 0.17 TCGA-D7-A4YV-01 20 24524045 24524045 C T SYNDIG1 Silent p.D104D 0.38 TCGA-D7-A4YV-01 20 25011536 25011536 G A ACSS1 Missense_Mutation p.R164C 0.15 deleterious(0) probably_damaging(0.953) TCGA-D7-A4YV-01 20 32354681 32354681 C T ZNF341 Missense_Mutation p.A409V 0.17 tolerated(0.4) benign(0.004) TCGA-D7-A4YV-01 20 33128468 33128469 - C DYNLRB1 3'UTR 0.12 TCGA-D7-A4YV-01 20 36641193 36641193 A G TTI1 Silent p.D342D 0.14 TCGA-D7-A4YV-01 20 37634810 37634810 G A DHX35 Missense_Mutation p.A345T 0.17 deleterious(0) probably_damaging(1) TCGA-D7-A4YV-01 20 39725955 39725955 A - TOP1 Frame_Shift_Del p.N277Ifs*10 0.32 TCGA-D7-A4YV-01 20 39831389 39831389 C T ZHX3 Missense_Mutation p.S723N 0.17 tolerated(0.63) benign(0.085) TCGA-D7-A4YV-01 20 39980542 39980542 C T LPIN3 Missense_Mutation p.A395V 0.20 deleterious(0.01) possibly_damaging(0.907) TCGA-D7-A4YV-01 20 39989982 39989982 C G EMILIN3 Missense_Mutation p.A743P 0.11 deleterious(0.01) probably_damaging(0.972) TCGA-D7-A4YV-01 20 408048 408048 C A RBCK1 Missense_Mutation p.P374Q 0.15 deleterious(0.01) probably_damaging(0.938) TCGA-D7-A4YV-01 20 42789012 42789012 G T JPH2 Missense_Mutation p.H139N 0.21 deleterious(0) probably_damaging(0.999) TCGA-D7-A4YV-01 20 42907672 42907672 G A GDAP1L1 Missense_Mutation p.R279H 0.20 deleterious(0) probably_damaging(0.997) TCGA-D7-A4YV-01 20 43386791 43386791 C T RIMS4 Missense_Mutation p.A92T 0.17 deleterious_low_confidence(0) benign(0.089) TCGA-D7-A4YV-01 20 43850595 43850595 A C SEMG2 Missense_Mutation p.N108H 0.31 tolerated(0.32) benign(0.008) TCGA-D7-A4YV-01 20 43850598 43850598 T A SEMG2 Missense_Mutation p.Y109N 0.31 tolerated(0.45) benign(0.006) TCGA-D7-A4YV-01 20 43964515 43964515 G A SDC4 Nonsense_Mutation p.R36* 0.19 TCGA-D7-A4YV-01 20 44569201 44569201 C T PCIF1 Missense_Mutation p.R113W 0.38 deleterious(0) probably_damaging(1) TCGA-D7-A4YV-01 20 56137185 56137185 G A PCK1 Missense_Mutation p.V95I 0.20 tolerated(0.14) benign(0.005) TCGA-D7-A4YV-01 20 57876698 57876698 C T EDN3 Missense_Mutation p.R96C 0.39 deleterious(0) probably_damaging(1) TCGA-D7-A4YV-01 20 60887584 60887584 G A LAMA5 Nonsense_Mutation p.R3078* 0.46 TCGA-D7-A4YV-01 20 61833646 61833646 A G YTHDF1 Missense_Mutation p.V549A 0.17 tolerated(0.06) benign(0.008) TCGA-D7-A4YV-01 20 62197486 62197486 C T HELZ2 Missense_Mutation p.V897M 0.25 deleterious(0) probably_damaging(1) TCGA-D7-A4YV-01 21 11021169 11021169 T C BAGE2 RNA 0.03 TCGA-D7-A4YV-01 21 16338967 16338967 T - NRIP1 Frame_Shift_Del p.N516Tfs*11 0.20 TCGA-D7-A4YV-01 21 30715090 30715090 G A BACH1 Missense_Mutation p.R716H 0.24 tolerated(0.46) benign(0.434) TCGA-D7-A4YV-01 21 32559328 32559328 G T TIAM1 Missense_Mutation p.A884D 0.20 deleterious(0) probably_damaging(1) TCGA-D7-A4YV-01 21 33103990 33103990 C T SCAF4 Missense_Mutation p.A6T 0.13 benign(0.109) TCGA-D7-A4YV-01 21 37617999 37617999 C T DOPEY2 Missense_Mutation p.L1241F 0.32 deleterious(0) possibly_damaging(0.847) TCGA-D7-A4YV-01 21 37747468 37747468 C T MORC3 Silent p.N898N 0.16 TCGA-D7-A4YV-01 21 43242266 43242266 C T PRDM15 Missense_Mutation p.R996Q 0.17 tolerated(0.2) possibly_damaging(0.651) TCGA-D7-A4YV-01 21 46321619 46321619 G A ITGB2 Silent p.L177L 0.23 TCGA-D7-A4YV-01 21 47851682 47851682 C T PCNT Silent p.T2768T 0.18 TCGA-D7-A4YV-01 22 17601118 17601119 - C CECR6 Frame_Shift_Ins p.G301Rfs*304 0.33 TCGA-D7-A4YV-01 22 19967344 19967344 G A ARVCF Missense_Mutation p.R440W 0.31 deleterious(0) probably_damaging(0.996) TCGA-D7-A4YV-01 22 22123444 22123444 G A MAPK1 Intron 0.24 TCGA-D7-A4YV-01 22 24717327 24717327 C T SPECC1L Missense_Mutation p.R127C 0.28 deleterious(0.01) probably_damaging(0.997) TCGA-D7-A4YV-01 22 25747816 25747816 G A LRP5L Missense_Mutation p.R237C 0.13 deleterious(0) probably_damaging(0.972) TCGA-D7-A4YV-01 22 29707029 29707029 G - GAS2L1 3'UTR 0.17 TCGA-D7-A4YV-01 22 29833658 29833658 C T RFPL1 5'Flank 0.29 TCGA-D7-A4YV-01 22 32011260 32011260 G T SFI1 Missense_Mutation p.A1099S 0.20 tolerated(0.22) possibly_damaging(0.797) TCGA-D7-A4YV-01 22 35947942 35947942 G A RASD2 Missense_Mutation p.V222I 0.28 tolerated(0.42) benign(0.001) TCGA-D7-A4YV-01 22 37962639 37962639 C - CDC42EP1 Frame_Shift_Del p.R97Gfs*115 0.25 TCGA-D7-A4YV-01 22 38027048 38027048 C T GGA1 Silent p.P490P 0.25 TCGA-D7-A4YV-01 22 38621523 38621523 A G TMEM184B Missense_Mutation p.F232S 0.34 deleterious(0) probably_damaging(0.986) TCGA-D7-A4YV-01 22 38823526 38823526 C T KCNJ4 Nonsense_Mutation p.W204* 0.21 TCGA-D7-A4YV-01 22 39477208 39477208 A G APOBEC3G Missense_Mutation p.T148A 0.24 tolerated(0.54) benign(0.297) TCGA-D7-A4YV-01 22 40762510 40762510 C T ADSL Missense_Mutation p.A480V 0.20 tolerated(0.45) benign(0.001) TCGA-D7-A4YV-01 22 41904043 41904043 G A ACO2 Missense_Mutation p.R141H 0.17 tolerated_low_confidence(0.05) benign(0.227) TCGA-D7-A4YV-01 22 43460205 43460205 C T TTLL1 Missense_Mutation p.R210H 0.10 deleterious(0.01) possibly_damaging(0.849) TCGA-D7-A4YV-01 22 45802421 45802421 C T SMC1B Missense_Mutation p.E179K 0.23 tolerated(0.15) benign(0.03) TCGA-D7-A4YV-01 22 46134638 46134638 G A ATXN10 Missense_Mutation p.D308N 0.20 deleterious(0.03) probably_damaging(0.91) TCGA-D7-A4YV-01 22 46652994 46652994 G A PKDREJ Missense_Mutation p.R2076C 0.19 deleterious(0) probably_damaging(1) TCGA-D7-A4YV-01 22 46658610 46658610 C T PKDREJ Missense_Mutation p.V204I 0.09 tolerated(1) benign(0.001) TCGA-D7-A4YV-01 22 50277799 50277799 C T ZBED4 Silent p.R163R 0.24 TCGA-D7-A4YV-01 22 50470379 50470379 C T TTLL8 Silent p.P497P 0.30 TCGA-D7-A4YV-01 22 50616018 50616018 G A PANX2 Missense_Mutation p.V293M 0.26 deleterious(0) probably_damaging(0.998) TCGA-D7-A4YV-01 22 50728320 50728320 A C PLXNB2 Missense_Mutation p.F232V 0.26 deleterious(0) possibly_damaging(0.592) TCGA-D7-A4YV-01 2 100170816 100170816 G A AFF3 Silent p.Y1197Y 0.24 TCGA-D7-A4YV-01 2 103324646 103324646 C T SLC9A2 Missense_Mutation p.R713C 0.19 deleterious(0.03) benign(0.003) TCGA-D7-A4YV-01 2 105472918 105472918 C T POU3F3 Missense_Mutation p.P317L 0.13 deleterious(0.01) possibly_damaging(0.883) TCGA-D7-A4YV-01 2 107459935 107459935 G A ST6GAL2 Nonsense_Mutation p.Q167* 0.25 TCGA-D7-A4YV-01 2 108875249 108875249 C T SULT1C3 Missense_Mutation p.R196W 0.31 deleterious(0.04) possibly_damaging(0.893) TCGA-D7-A4YV-01 2 11727563 11727563 G A GREB1 Intron 0.21 TCGA-D7-A4YV-01 2 119915206 119915206 C T C1QL2 Missense_Mutation p.G214S 0.15 tolerated(0.06) probably_damaging(0.995) TCGA-D7-A4YV-01 2 127806030 127806031 - A BIN1 3'UTR 0.41 TCGA-D7-A4YV-01 2 127828171 127828171 C A BIN1 Missense_Mutation p.E91D 0.21 deleterious(0.04) possibly_damaging(0.702) TCGA-D7-A4YV-01 2 131520251 131520251 C - AMER3 Frame_Shift_Del p.P204Rfs*62 0.14 TCGA-D7-A4YV-01 2 131813195 131813197 GGA - FAM168B In_Frame_Del p.S76del 0.13 TCGA-D7-A4YV-01 2 135099177 135099177 G A MGAT5 Missense_Mutation p.G275E 0.17 deleterious(0) probably_damaging(1) TCGA-D7-A4YV-01 2 136670055 136670055 C T DARS Splice_Site p.X410_splice 0.28 TCGA-D7-A4YV-01 2 139316735 139316735 A G SPOPL Silent p.G208G 0.32 TCGA-D7-A4YV-01 2 149270475 149270475 C - MBD5 Frame_Shift_Del p.K1486Nfs*55 0.17 TCGA-D7-A4YV-01 2 155566208 155566209 - C KCNJ3 Frame_Shift_Ins p.L268Pfs*15 0.22 TCGA-D7-A4YV-01 2 160206241 160206241 G A BAZ2B Missense_Mutation p.P1614L 0.18 benign(0.05) TCGA-D7-A4YV-01 2 170394546 170394546 C T FASTKD1 Missense_Mutation p.R684H 0.26 tolerated(0.1) benign(0.133) TCGA-D7-A4YV-01 2 176982219 176982219 G A HOXD10 Missense_Mutation p.E220K 0.16 tolerated(0.4) benign(0.162) TCGA-D7-A4YV-01 2 177016724 177016724 G A HOXD4 Silent p.P121P 0.30 TCGA-D7-A4YV-01 2 179482697 179482697 A G TTN Missense_Mutation p.V15794A 0.24 TCGA-D7-A4YV-01 2 186673640 186673640 T - FSIP2 Frame_Shift_Del p.I6626Ffs*5 0.21 TCGA-D7-A4YV-01 2 18766000 18766000 C T NT5C1B Missense_Mutation p.R228Q 0.18 deleterious_low_confidence(0.02) benign(0.02) TCGA-D7-A4YV-01 2 191818296 191818296 G T GLS Missense_Mutation p.K552N 0.19 tolerated(0.19) benign(0.029) TCGA-D7-A4YV-01 2 191848451 191848451 C T STAT1 Missense_Mutation p.V455I 0.27 tolerated(0.24) benign(0.11) TCGA-D7-A4YV-01 2 197657712 197657712 C T GTF3C3 Missense_Mutation p.V127I 0.17 tolerated_low_confidence(0.07) benign(0.099) TCGA-D7-A4YV-01 2 198353798 198353798 T C HSPD1 Silent p.T381T 0.25 TCGA-D7-A4YV-01 2 201943745 201943745 G A NDUFB3 Missense_Mutation p.R47H 0.21 tolerated(0.05) benign(0.042) TCGA-D7-A4YV-01 2 202151290 202151290 A - CASP8 Frame_Shift_Del p.K532Nfs*73 0.21 TCGA-D7-A4YV-01 2 203157521 203157521 C T NOP58 Nonsense_Mutation p.R268* 0.24 TCGA-D7-A4YV-01 2 207174428 207174428 A - ZDBF2 Frame_Shift_Del p.K1728Nfs*5 0.41 TCGA-D7-A4YV-01 2 207631411 207631411 T C FASTKD2 5'UTR 0.22 TCGA-D7-A4YV-01 2 208631779 208631779 G A FZD5 Missense_Mutation p.A562V 0.34 tolerated_low_confidence(0.06) possibly_damaging(0.674) TCGA-D7-A4YV-01 2 208633129 208633129 G T FZD5 Missense_Mutation p.A112D 0.27 deleterious(0) probably_damaging(1) TCGA-D7-A4YV-01 2 209307125 209307125 G A PTH2R Missense_Mutation p.V150I 0.23 tolerated(0.36) benign(0.02) TCGA-D7-A4YV-01 2 213403254 213403254 T - ERBB4 Frame_Shift_Del p.M1? 0.22 TCGA-D7-A4YV-01 2 215884358 215884358 C T ABCA12 Missense_Mutation p.A484T 0.15 tolerated(0.46) benign(0.002) TCGA-D7-A4YV-01 2 216811832 216811832 C T MREG Nonsense_Mutation p.W87* 0.19 TCGA-D7-A4YV-01 2 220075526 220075526 G A ABCB6 Silent p.G721G 0.14 TCGA-D7-A4YV-01 2 220371039 220371039 G A GMPPA Missense_Mutation p.V353M 0.27 deleterious(0) probably_damaging(0.976) TCGA-D7-A4YV-01 2 220505288 220505288 A - SLC4A3 Frame_Shift_Del p.K1166Nfs*9 0.20 TCGA-D7-A4YV-01 2 222429021 222429021 G A EPHA4 Nonsense_Mutation p.R85* 0.24 TCGA-D7-A4YV-01 2 226447216 226447216 G A NYAP2 Silent p.T361T 0.19 TCGA-D7-A4YV-01 2 231931679 231931680 - A PSMD1 Frame_Shift_Ins p.P125Tfs*3 0.21 TCGA-D7-A4YV-01 2 232263333 232263333 T C B3GNT7 Silent p.G301G 0.22 TCGA-D7-A4YV-01 2 233346258 233346258 G A ECEL1 Silent p.C649C 0.26 TCGA-D7-A4YV-01 2 234627977 234627977 T - UGT1A4 Frame_Shift_Del p.W173Gfs*8 0.21 TCGA-D7-A4YV-01 2 234875353 234875353 C T TRPM8 Missense_Mutation p.A660V 0.26 deleterious(0) benign(0.202) TCGA-D7-A4YV-01 2 238277427 238277427 G T COL6A3 Missense_Mutation p.A1560D 0.18 probably_damaging(0.955) TCGA-D7-A4YV-01 2 239079299 239079299 G A ILKAP Missense_Mutation p.R353W 0.33 deleterious(0) probably_damaging(0.97) TCGA-D7-A4YV-01 2 241697895 241697895 G A KIF1A Missense_Mutation p.R822W 0.42 deleterious(0) probably_damaging(1) TCGA-D7-A4YV-01 2 242002305 242002305 C T SNED1 Silent p.G785G 0.18 TCGA-D7-A4YV-01 2 26204561 26204561 C T KIF3C Missense_Mutation p.E76K 0.23 probably_damaging(0.954) TCGA-D7-A4YV-01 2 27157486 27157486 G A DPYSL5 Silent p.T277T 0.28 TCGA-D7-A4YV-01 2 272080 272081 - C ACP1 Intron 0.28 TCGA-D7-A4YV-01 2 27535564 27535564 T C MPV17 Missense_Mutation p.K88E 0.25 deleterious(0) possibly_damaging(0.695) TCGA-D7-A4YV-01 2 27560090 27560090 G A GTF3C2 Intron 0.26 TCGA-D7-A4YV-01 2 27565017 27565017 A G GTF3C2 Missense_Mutation p.V218A 0.25 tolerated(0.8) benign(0) TCGA-D7-A4YV-01 2 29416153 29416153 T C ALK Silent p.G1600G 0.20 TCGA-D7-A4YV-01 2 30863560 30863560 T - LCLAT1 3'UTR 0.25 TCGA-D7-A4YV-01 2 31360988 31360988 T C GALNT14 5'UTR 0.26 TCGA-D7-A4YV-01 2 37297377 37297377 G A HEATR5B Missense_Mutation p.T308M 0.21 deleterious(0) benign(0.435) TCGA-D7-A4YV-01 2 40656208 40656208 G T SLC8A1 Missense_Mutation p.P405T 0.28 tolerated(0.61) benign(0.098) TCGA-D7-A4YV-01 2 42935094 42935094 G A MTA3 Missense_Mutation p.R401K 0.27 tolerated(0.22) benign(0.121) TCGA-D7-A4YV-01 2 43452232 43452232 G C ZFP36L2 Silent p.G237G 0.09 TCGA-D7-A4YV-01 2 44078772 44078772 C T ABCG8 Silent p.G124G 0.27 TCGA-D7-A4YV-01 2 48602243 48602243 C T FOXN2 Silent p.S319S 0.31 TCGA-D7-A4YV-01 2 48808508 48808508 A C STON1-GTF2A1L Silent p.R246R 0.23 TCGA-D7-A4YV-01 2 51254659 51254659 G A NRXN1 Silent p.R251R 0.22 TCGA-D7-A4YV-01 2 54122183 54122183 C T PSME4 Silent p.E1291E 0.18 TCGA-D7-A4YV-01 2 54483380 54483380 G A TSPYL6 5'UTR 0.24 TCGA-D7-A4YV-01 2 55436777 55436777 T - CLHC1 Frame_Shift_Del p.K230Nfs*11 0.24 TCGA-D7-A4YV-01 2 60688530 60688530 G A BCL11A Missense_Mutation p.T506M 0.20 tolerated(0.11) possibly_damaging(0.791) TCGA-D7-A4YV-01 2 65296839 65296839 C T CEP68 Silent p.N87N 0.29 TCGA-D7-A4YV-01 2 71148374 71148374 C T VAX2 Missense_Mutation p.R132C 0.25 deleterious(0) probably_damaging(1) TCGA-D7-A4YV-01 2 71191897 71191897 A C ATP6V1B1 Missense_Mutation p.Q427P 0.30 deleterious(0.01) probably_damaging(0.953) TCGA-D7-A4YV-01 2 71801492 71801492 G - DYSF Frame_Shift_Del p.A1133Pfs*5 0.27 TCGA-D7-A4YV-01 2 73455925 73455925 G A PRADC1 Silent p.D148D 0.42 TCGA-D7-A4YV-01 2 74653396 74653396 G A RTKN Missense_Mutation p.R556C 0.21 deleterious_low_confidence(0) benign(0.28) TCGA-D7-A4YV-01 2 75278554 75278554 G A TACR1 Silent p.V252V 0.29 TCGA-D7-A4YV-01 2 86993070 86993070 G A RMND5A Nonsense_Mutation p.W259* 0.05 TCGA-D7-A4YV-01 2 88328096 88328096 C T KRCC1 5'UTR 0.15 TCGA-D7-A4YV-01 2 97366180 97366180 A G FER1L5 RNA 0.22 TCGA-D7-A4YV-01 2 97368480 97368480 T C LMAN2L 3'Flank 0.19 TCGA-D7-A4YV-01 2 98744813 98744813 G A VWA3B Missense_Mutation p.A272T 0.27 deleterious(0) probably_damaging(0.982) TCGA-D7-A4YV-01 3 10370624 10370624 C T ATP2B2 Silent p.P1202P 0.24 TCGA-D7-A4YV-01 3 11070970 11070970 C T SLC6A1 Missense_Mutation p.R419C 0.15 deleterious(0.01) benign(0.224) TCGA-D7-A4YV-01 3 111432785 111432785 C T PLCXD2 Missense_Mutation p.P226S 0.07 tolerated(0.06) possibly_damaging(0.539) TCGA-D7-A4YV-01 3 111849201 111849201 C A GCSAM Intron 0.09 TCGA-D7-A4YV-01 3 112998694 112998694 C T BOC Missense_Mutation p.R682W 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-D7-A4YV-01 3 113679540 113679540 T - ZDHHC23 Intron 0.21 TCGA-D7-A4YV-01 3 119379220 119379220 C T POPDC2 Silent p.A17A 0.23 TCGA-D7-A4YV-01 3 119526207 119526207 G A NR1I2 Missense_Mutation p.G76D 0.22 tolerated(0.51) benign(0.079) TCGA-D7-A4YV-01 3 121658339 121658339 T C SLC15A2 Silent p.S635S 0.04 TCGA-D7-A4YV-01 3 124462820 124462820 C T UMPS Silent p.S444S 0.34 TCGA-D7-A4YV-01 3 126735442 126735442 G A PLXNA1 Missense_Mutation p.A1033T 0.28 deleterious(0.04) probably_damaging(1) TCGA-D7-A4YV-01 3 127703079 127703079 C - KBTBD12 Frame_Shift_Del p.P612Rfs*78 0.17 TCGA-D7-A4YV-01 3 129202444 129202444 G A IFT122 Silent p.L641L 0.22 TCGA-D7-A4YV-01 3 130285684 130285684 G A COL6A6 Missense_Mutation p.R474Q 0.21 tolerated(0.08) benign(0.161) TCGA-D7-A4YV-01 3 130368359 130368359 G A COL6A6 Missense_Mutation p.V1896M 0.23 deleterious(0.01) possibly_damaging(0.859) TCGA-D7-A4YV-01 3 134967327 134967327 A C EPHB1 Missense_Mutation p.K889T 0.22 deleterious(0.01) probably_damaging(0.98) TCGA-D7-A4YV-01 3 13613154 13613154 C T FBLN2 Silent p.S433S 0.47 TCGA-D7-A4YV-01 3 138724463 138724463 G A PRR23A Silent p.F216F 0.33 TCGA-D7-A4YV-01 3 138739117 138739117 G A PRR23B Silent p.G129G 0.25 TCGA-D7-A4YV-01 3 142681852 142681852 G A PAQR9 Silent p.G109G 0.37 TCGA-D7-A4YV-01 3 142720440 142720440 T C U2SURP 5'UTR 0.23 TCGA-D7-A4YV-01 3 147130449 147130449 C T ZIC1 Missense_Mutation p.S376L 0.26 deleterious(0) probably_damaging(0.996) TCGA-D7-A4YV-01 3 14861613 14861613 C T FGD5 Silent p.S345S 0.23 TCGA-D7-A4YV-01 3 148741948 148741948 C T GYG1 Silent p.N239N 0.05 TCGA-D7-A4YV-01 3 157820483 157820483 G A SHOX2 Missense_Mutation p.S204L 0.26 deleterious(0) probably_damaging(0.985) TCGA-D7-A4YV-01 3 165547357 165547357 C A BCHE Nonsense_Mutation p.E489* 0.28 TCGA-D7-A4YV-01 3 165547582 165547582 G A BCHE Missense_Mutation p.R414C 0.30 deleterious(0) probably_damaging(1) TCGA-D7-A4YV-01 3 172834946 172834946 G A SPATA16 Silent p.Y192Y 0.18 TCGA-D7-A4YV-01 3 178916936 178916936 G A PIK3CA Missense_Mutation p.R108H 0.22 deleterious(0.03) probably_damaging(0.983) TCGA-D7-A4YV-01 3 182662919 182662919 C T DCUN1D1 Missense_Mutation p.R248H 0.31 deleterious(0.02) possibly_damaging(0.834) TCGA-D7-A4YV-01 3 182872122 182872122 T C LAMP3 Missense_Mutation p.Y36C 0.27 tolerated(0.14) benign(0.016) TCGA-D7-A4YV-01 3 183368193 183368193 C T KLHL24 Missense_Mutation p.R17C 0.24 deleterious_low_confidence(0) benign(0.446) TCGA-D7-A4YV-01 3 183898974 183898975 - A AP2M1 Frame_Shift_Ins p.Q225Afs*7 0.19 TCGA-D7-A4YV-01 3 195481223 195481223 G A MUC4 Silent p.D5063D 0.27 TCGA-D7-A4YV-01 3 196743090 196743090 C T MFI2 Missense_Mutation p.A351T 0.41 tolerated(0.08) possibly_damaging(0.49) TCGA-D7-A4YV-01 3 197239128 197239128 A G BDH1 Missense_Mutation p.Y224H 0.19 tolerated(0.07) possibly_damaging(0.591) TCGA-D7-A4YV-01 3 33626368 33626368 C T CLASP2 Missense_Mutation p.A706T 0.27 tolerated(0.65) benign(0.012) TCGA-D7-A4YV-01 3 36874817 36874817 C A TRANK1 Missense_Mutation p.G2042V 0.21 tolerated(0.34) benign(0.01) TCGA-D7-A4YV-01 3 38139232 38139232 C T DLEC1 Intron 0.16 TCGA-D7-A4YV-01 3 38524874 38524874 A - ACVR2B 3'UTR 0.20 TCGA-D7-A4YV-01 3 42751226 42751226 G T CCDC13 Silent p.A646A 0.18 TCGA-D7-A4YV-01 3 44684230 44684230 A C ZNF197 Missense_Mutation p.K536N 0.22 deleterious(0) probably_damaging(0.999) TCGA-D7-A4YV-01 3 4669509 4669509 G A ITPR1 Missense_Mutation p.A76T 0.20 tolerated(0.47) probably_damaging(0.997) TCGA-D7-A4YV-01 3 46754425 46754425 C T PRSS50 Missense_Mutation p.C296Y 0.22 deleterious(0) probably_damaging(0.999) TCGA-D7-A4YV-01 3 47452631 47452631 G A PTPN23 Missense_Mutation p.A1115T 0.25 benign(0.195) TCGA-D7-A4YV-01 3 4810245 4810245 G A ITPR1 Missense_Mutation p.E1911K 0.20 tolerated(0.12) benign(0.15) TCGA-D7-A4YV-01 3 49680380 49680381 - A BSN Frame_Shift_Ins p.H440Afs*44 0.18 TCGA-D7-A4YV-01 3 49688124 49688124 C T BSN Missense_Mutation p.P533L 0.29 unknown(0) TCGA-D7-A4YV-01 3 49712736 49712736 G - APEH Frame_Shift_Del p.E91Nfs*3 0.21 TCGA-D7-A4YV-01 3 49764604 49764604 A G IP6K1 Missense_Mutation p.L426P 0.27 deleterious(0) probably_damaging(1) TCGA-D7-A4YV-01 3 49842206 49842206 G A FAM212A Missense_Mutation p.R217H 0.27 deleterious(0.03) probably_damaging(0.998) TCGA-D7-A4YV-01 3 51417604 51417604 C - DOCK3 Frame_Shift_Del p.P1852Qfs*45 0.21 TCGA-D7-A4YV-01 3 51675812 51675812 G A RAD54L2 Missense_Mutation p.R760Q 0.29 tolerated(0.07) possibly_damaging(0.475) TCGA-D7-A4YV-01 3 52255795 52255795 C T TLR9 Missense_Mutation p.C1000Y 0.28 deleterious(0) probably_damaging(0.999) TCGA-D7-A4YV-01 3 52552802 52552802 C T STAB1 Missense_Mutation p.R1651W 0.34 deleterious(0.02) possibly_damaging(0.893) TCGA-D7-A4YV-01 3 52557118 52557118 G A STAB1 Missense_Mutation p.A2330T 0.31 deleterious(0) possibly_damaging(0.858) TCGA-D7-A4YV-01 3 57135251 57135251 C T IL17RD Missense_Mutation p.V374I 0.29 tolerated(0.71) benign(0.03) TCGA-D7-A4YV-01 3 9488801 9488801 G A SETD5 Missense_Mutation p.R531Q 0.27 deleterious(0) probably_damaging(0.996) TCGA-D7-A4YV-01 3 97595964 97595964 G A CRYBG3 Missense_Mutation p.E28K 0.29 deleterious_low_confidence(0.03) benign(0.021) TCGA-D7-A4YV-01 3 9780731 9780731 C T BRPF1 Silent p.D216D 0.23 TCGA-D7-A4YV-01 4 100479244 100479244 T C TRMT10A Missense_Mutation p.I104V 0.24 tolerated(0.73) benign(0.002) TCGA-D7-A4YV-01 4 100824939 100824939 A G DNAJB14 Missense_Mutation p.V320A 0.18 deleterious(0) possibly_damaging(0.833) TCGA-D7-A4YV-01 4 107846975 107846975 G T DKK2 Silent p.P118P 0.25 TCGA-D7-A4YV-01 4 113350368 113350368 G A ALPK1 Missense_Mutation p.A287T 0.24 tolerated(0.07) benign(0.285) TCGA-D7-A4YV-01 4 114267082 114267082 C T ANK2 Silent p.C1425C 0.24 TCGA-D7-A4YV-01 4 120527968 120527968 G A PDE5A Silent p.L213L 0.27 TCGA-D7-A4YV-01 4 123949476 123949476 C T SPATA5 Missense_Mutation p.P669S 0.28 deleterious(0) probably_damaging(0.999) TCGA-D7-A4YV-01 4 129783052 129783052 C - JADE1 Frame_Shift_Del p.R394Gfs*20 0.22 TCGA-D7-A4YV-01 4 134073642 134073642 A G PCDH10 Missense_Mutation p.S783G 0.28 tolerated(0.06) probably_damaging(0.977) TCGA-D7-A4YV-01 4 134084249 134084249 A T PCDH10 Missense_Mutation p.N972I 0.29 deleterious(0) probably_damaging(0.997) TCGA-D7-A4YV-01 4 13600885 13600885 C T BOD1L1 Missense_Mutation p.A2547T 0.10 benign(0.004) TCGA-D7-A4YV-01 4 138452481 138452481 T C PCDH18 Silent p.Q254Q 0.33 TCGA-D7-A4YV-01 4 140264042 140264042 T C NAA15 Silent p.A155A 0.19 TCGA-D7-A4YV-01 4 142143532 142143532 A - ZNF330 Frame_Shift_Del p.K5Rfs*18 0.29 TCGA-D7-A4YV-01 4 146770683 146770683 T G ZNF827 Missense_Mutation p.K671T 0.29 tolerated(0.26) benign(0.005) TCGA-D7-A4YV-01 4 15067858 15067858 T - CPEB2 Frame_Shift_Del p.C989Vfs*31 0.23 TCGA-D7-A4YV-01 4 152024210 152024210 T C RPS3A Missense_Mutation p.L181S 0.19 deleterious(0.01) possibly_damaging(0.846) TCGA-D7-A4YV-01 4 153249360 153249361 - T FBXW7 Frame_Shift_Ins p.R473Kfs*4 0.24 TCGA-D7-A4YV-01 4 154702746 154702746 C A SFRP2 Nonsense_Mutation p.E249* 0.29 TCGA-D7-A4YV-01 4 155163835 155163835 G A DCHS2 Missense_Mutation p.A1889V 0.20 tolerated(0.08) benign(0.282) TCGA-D7-A4YV-01 4 159789592 159789592 C A FNIP2 Missense_Mutation p.P602T 0.21 tolerated_low_confidence(0.1) benign(0.098) TCGA-D7-A4YV-01 4 170628202 170628204 AAG - CLCN3 In_Frame_Del p.E647del 0.26 TCGA-D7-A4YV-01 4 177713407 177713407 G A VEGFC Missense_Mutation p.P20L 0.20 tolerated_low_confidence(0.68) benign(0.001) TCGA-D7-A4YV-01 4 178257356 178257356 A - NEIL3 Frame_Shift_Del p.K171Nfs*7 0.22 TCGA-D7-A4YV-01 4 184627978 184627978 G A TRAPPC11 Missense_Mutation p.R1025H 0.22 tolerated(0.54) possibly_damaging(0.908) TCGA-D7-A4YV-01 4 185631317 185631317 G A CENPU Missense_Mutation p.H236Y 0.28 tolerated(0.59) benign(0.023) TCGA-D7-A4YV-01 4 187206920 187206920 G T F11 Missense_Mutation p.G478V 0.17 tolerated(0.06) probably_damaging(1) TCGA-D7-A4YV-01 4 187517817 187517817 G A FAT1 Missense_Mutation p.H4293Y 0.25 possibly_damaging(0.489) TCGA-D7-A4YV-01 4 187584590 187584590 A G FAT1 Missense_Mutation p.I1148T 0.26 benign(0.142) TCGA-D7-A4YV-01 4 187628366 187628366 G A FAT1 Silent p.S872S 0.32 TCGA-D7-A4YV-01 4 206480 206480 G A ZNF876P RNA 0.20 TCGA-D7-A4YV-01 4 3769727 3769727 C T ADRA2C 3'UTR 0.29 TCGA-D7-A4YV-01 4 38690460 38690460 A - KLF3 Frame_Shift_Del p.K106Nfs*21 0.34 TCGA-D7-A4YV-01 4 39188158 39188158 G T WDR19 Splice_Site p.X33_splice 0.30 TCGA-D7-A4YV-01 4 420357 420357 C T ABCA11P RNA 0.26 TCGA-D7-A4YV-01 4 47788851 47788851 A G CORIN Silent p.N100N 0.32 TCGA-D7-A4YV-01 4 5624401 5624401 G A EVC2 Silent p.A788A 0.24 TCGA-D7-A4YV-01 4 57220355 57220355 A - AASDH Frame_Shift_Del p.D413Mfs*4 0.20 TCGA-D7-A4YV-01 4 5733348 5733348 G T EVC Missense_Mutation p.R194L 0.25 deleterious(0.02) benign(0.148) TCGA-D7-A4YV-01 4 6303575 6303575 C T WFS1 Missense_Mutation p.R685C 0.30 deleterious(0) probably_damaging(0.993) TCGA-D7-A4YV-01 4 6474045 6474045 G A PPP2R2C 5'UTR 0.39 TCGA-D7-A4YV-01 4 66189849 66189849 C T EPHA5 Missense_Mutation p.G1033R 0.10 tolerated(0.57) benign(0.436) TCGA-D7-A4YV-01 4 68688175 68688175 C T TMPRSS11D Silent p.R379R 0.17 TCGA-D7-A4YV-01 4 7032218 7032218 G A TBC1D14 3'UTR 0.42 TCGA-D7-A4YV-01 4 71232500 71232500 C A SMR3A Missense_Mutation p.P65Q 0.19 deleterious_low_confidence(0.01) unknown(0) TCGA-D7-A4YV-01 4 75178917 75178917 T C EPGN Intron 0.25 TCGA-D7-A4YV-01 4 7728548 7728548 G A SORCS2 Silent p.S929S 0.24 TCGA-D7-A4YV-01 4 80328918 80328918 C T GK2 Missense_Mutation p.S146N 0.28 deleterious(0.04) possibly_damaging(0.6) TCGA-D7-A4YV-01 4 85676453 85676453 A - WDFY3 Frame_Shift_Del p.L1842Yfs*10 0.13 TCGA-D7-A4YV-01 4 860170 860170 C T GAK Missense_Mutation p.A1009T 0.20 tolerated(0.44) benign(0.001) TCGA-D7-A4YV-01 4 89859380 89859380 C T FAM13A Silent p.G206G 0.23 TCGA-D7-A4YV-01 4 96140425 96140425 G A UNC5C Missense_Mutation p.A447V 0.26 tolerated(0.16) benign(0.334) TCGA-D7-A4YV-01 5 112173858 112173858 G A APC Missense_Mutation p.R856H 0.24 probably_damaging(0.964) TCGA-D7-A4YV-01 5 113831808 113831808 C T KCNN2 Missense_Mutation p.R557W 0.13 deleterious_low_confidence(0.01) unknown(0) TCGA-D7-A4YV-01 5 1216779 1216779 C T SLC6A19 Missense_Mutation p.R332C 0.23 deleterious(0.02) probably_damaging(0.934) TCGA-D7-A4YV-01 5 123982598 123982598 G A ZNF608 Missense_Mutation p.P1160L 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-D7-A4YV-01 5 1246084 1246084 G A SLC6A18 Missense_Mutation p.R593Q 0.33 tolerated(0.14) unknown(0) TCGA-D7-A4YV-01 5 126769169 126769169 C T MEGF10 Missense_Mutation p.A603V 0.34 deleterious(0.03) probably_damaging(0.917) TCGA-D7-A4YV-01 5 129240751 129240751 C - CHSY3 Frame_Shift_Del p.A79Rfs*99 0.33 TCGA-D7-A4YV-01 5 129243833 129243833 C G CHSY3 Missense_Mutation p.T289S 0.31 deleterious(0.02) possibly_damaging(0.474) TCGA-D7-A4YV-01 5 134686547 134686547 C T H2AFY Intron 0.17 TCGA-D7-A4YV-01 5 138210079 138210079 G A LRRTM2 Silent p.N57N 0.25 TCGA-D7-A4YV-01 5 138266343 138266343 G A CTNNA1 Missense_Mutation p.R731Q 0.29 deleterious(0.03) probably_damaging(0.947) TCGA-D7-A4YV-01 5 138715404 138715404 G A SLC23A1 Silent p.I300I 0.28 TCGA-D7-A4YV-01 5 139189281 139189281 G T PSD2 Missense_Mutation p.D86Y 0.29 deleterious_low_confidence(0) possibly_damaging(0.855) TCGA-D7-A4YV-01 5 140021628 140021628 C G TMCO6 Nonsense_Mutation p.S163* 0.22 TCGA-D7-A4YV-01 5 140039781 140039781 G A IK Splice_Site p.X452_splice 0.24 TCGA-D7-A4YV-01 5 140182211 140182211 G A PCDHA3 Missense_Mutation p.V477M 0.21 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-D7-A4YV-01 5 140221632 140221632 C T PCDHA8 Silent p.F242F 0.14 TCGA-D7-A4YV-01 5 140237471 140237471 C T PCDHA10 Missense_Mutation p.A613V 0.42 tolerated_low_confidence(0.22) benign(0.014) TCGA-D7-A4YV-01 5 140257310 140257310 G A PCDHA12 Silent p.S751S 0.26 TCGA-D7-A4YV-01 5 140740030 140740030 G A PCDHGB2 Missense_Mutation p.A110T 0.25 tolerated(0.16) benign(0.229) TCGA-D7-A4YV-01 5 140746185 140746185 C T PCDHGA5 Missense_Mutation p.S763L 0.21 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-D7-A4YV-01 5 140763130 140763130 C T PCDHGA7 Nonsense_Mutation p.R222* 0.14 TCGA-D7-A4YV-01 5 140768795 140768795 G A PCDHGB4 Silent p.P448P 0.05 TCGA-D7-A4YV-01 5 140773876 140773876 C T PCDHGA8 Missense_Mutation p.A499V 0.35 tolerated_low_confidence(0.38) benign(0.028) TCGA-D7-A4YV-01 5 141334608 141334608 G A PCDH12 Missense_Mutation p.R937W 0.17 deleterious(0) probably_damaging(1) TCGA-D7-A4YV-01 5 1414836 1414836 T C SLC6A3 Missense_Mutation p.S376G 0.18 tolerated(0.85) benign(0.001) TCGA-D7-A4YV-01 5 141694395 141694395 G A SPRY4 Silent p.S116S 0.32 TCGA-D7-A4YV-01 5 143853254 143853254 C T KCTD16 Silent p.C288C 0.18 TCGA-D7-A4YV-01 5 145562148 145562148 C T LARS 5'UTR 0.10 TCGA-D7-A4YV-01 5 147029959 147029959 C T JAKMIP2 Missense_Mutation p.S260N 0.18 deleterious(0.02) probably_damaging(0.943) TCGA-D7-A4YV-01 5 147516641 147516641 T - SPINK5 3'UTR 0.26 TCGA-D7-A4YV-01 5 147818048 147818048 G A FBXO38 Missense_Mutation p.R929H 0.17 deleterious(0) probably_damaging(0.978) TCGA-D7-A4YV-01 5 150718651 150718651 G A SLC36A2 Silent p.Y165Y 0.29 TCGA-D7-A4YV-01 5 159821572 159821572 C T C5orf54 Missense_Mutation p.R309H 0.16 deleterious(0) probably_damaging(0.999) TCGA-D7-A4YV-01 5 159835380 159835380 G A SLU7 Nonsense_Mutation p.R259* 0.23 TCGA-D7-A4YV-01 5 162943693 162943693 G A MAT2B Silent p.R232R 0.27 TCGA-D7-A4YV-01 5 167891734 167891734 C T WWC1 Missense_Mutation p.P979S 0.23 deleterious(0.04) benign(0.046) TCGA-D7-A4YV-01 5 170883891 170883891 A - FGF18 3'UTR 0.26 TCGA-D7-A4YV-01 5 177548704 177548704 A C N4BP3 Missense_Mutation p.D446A 0.09 deleterious(0.03) probably_damaging(0.983) TCGA-D7-A4YV-01 5 179044892 179044892 C T HNRNPH1 Missense_Mutation p.G277R 0.21 tolerated(0.09) possibly_damaging(0.516) TCGA-D7-A4YV-01 5 179306143 179306143 G A TBC1D9B Missense_Mutation p.R491C 0.30 deleterious(0) possibly_damaging(0.901) TCGA-D7-A4YV-01 5 179676069 179676069 G A MAPK9 Missense_Mutation p.R174W 0.20 deleterious(0) probably_damaging(1) TCGA-D7-A4YV-01 5 23527861 23527861 C T PRDM9 Silent p.Y888Y 0.29 TCGA-D7-A4YV-01 5 24535293 24535293 C A CDH10 Missense_Mutation p.G248C 0.19 deleterious(0) probably_damaging(0.999) TCGA-D7-A4YV-01 5 353844 353844 G A AHRR Splice_Site p.X25_splice 0.17 TCGA-D7-A4YV-01 5 40981654 40981654 T G C7 Silent p.P837P 0.21 TCGA-D7-A4YV-01 5 45303883 45303883 G A HCN1 Missense_Mutation p.A479V 0.05 deleterious(0) probably_damaging(0.98) TCGA-D7-A4YV-01 5 64020298 64020298 T - SREK1IP1 Frame_Shift_Del p.K129Nfs*29 0.12 TCGA-D7-A4YV-01 5 65457976 65457976 G A SREK1 Missense_Mutation p.A151T 0.33 tolerated(0.22) benign(0.061) TCGA-D7-A4YV-01 5 70766233 70766233 T - BDP1 Frame_Shift_Del p.L313* 0.36 TCGA-D7-A4YV-01 5 7784525 7784525 C A ADCY2 Missense_Mutation p.S811Y 0.19 deleterious(0.01) benign(0.092) TCGA-D7-A4YV-01 5 79095310 79095310 C T CMYA5 Silent p.S4027S 0.20 TCGA-D7-A4YV-01 5 79854592 79854592 G - ANKRD34B Frame_Shift_Del p.P416Qfs*4 0.24 TCGA-D7-A4YV-01 5 80770364 80770364 T C SSBP2 Silent p.P150P 0.35 TCGA-D7-A4YV-01 5 82808252 82808252 A T VCAN Intron 0.25 TCGA-D7-A4YV-01 5 92923744 92923744 C T NR2F1 Silent p.A195A 0.24 TCGA-D7-A4YV-01 5 96071876 96071876 A - CAST Frame_Shift_Del p.E172Kfs*5 0.20 TCGA-D7-A4YV-01 6 10530035 10530035 C T GCNT2 Silent p.D297D 0.21 TCGA-D7-A4YV-01 6 107854724 107854724 C A SOBP Silent p.R161R 0.18 TCGA-D7-A4YV-01 6 111196240 111196240 A G AMD1 5'UTR 0.33 TCGA-D7-A4YV-01 6 111654417 111654417 C T REV3L Missense_Mutation p.V2612I 0.15 deleterious(0) probably_damaging(0.999) TCGA-D7-A4YV-01 6 112024133 112024133 G A FYN Missense_Mutation p.R218W 0.39 deleterious(0) probably_damaging(0.998) TCGA-D7-A4YV-01 6 116542291 116542291 A - NT5DC1 Frame_Shift_Del p.K203Nfs*6 0.23 TCGA-D7-A4YV-01 6 116580003 116580003 G A TSPYL4 5'Flank 0.26 TCGA-D7-A4YV-01 6 121401846 121401847 - A TBC1D32 3'Flank 0.39 TCGA-D7-A4YV-01 6 127796885 127796885 G A SOGA3 Silent p.S762S 0.32 TCGA-D7-A4YV-01 6 133846244 133846244 C T EYA4 Intron 0.34 TCGA-D7-A4YV-01 6 138428376 138428376 G A PERP Silent p.G34G 0.30 TCGA-D7-A4YV-01 6 152708388 152708388 T G SYNE1 Missense_Mutation p.K2769T 0.23 probably_damaging(0.999) TCGA-D7-A4YV-01 6 152737985 152737985 G A SYNE1 Missense_Mutation p.R1863W 0.25 probably_damaging(0.999) TCGA-D7-A4YV-01 6 155596997 155596997 C - CLDN20 Frame_Shift_Del p.H48Qfs*19 0.21 TCGA-D7-A4YV-01 6 161135924 161135924 G T PLG Missense_Mutation p.A216S 0.28 tolerated(0.91) benign(0.01) TCGA-D7-A4YV-01 6 161523007 161523007 C A MAP3K4 Missense_Mutation p.P1253H 0.21 deleterious(0) probably_damaging(0.995) TCGA-D7-A4YV-01 6 161966406 161966406 C T PARK2 Intron 0.23 TCGA-D7-A4YV-01 6 170858188 170858188 T A PSMB1 Missense_Mutation p.I43F 0.33 deleterious(0) possibly_damaging(0.785) TCGA-D7-A4YV-01 6 20144502 20144502 A C MBOAT1 Missense_Mutation p.I123S 0.27 deleterious(0) benign(0.371) TCGA-D7-A4YV-01 6 25727363 25727363 C T HIST1H2BA Missense_Mutation p.A76V 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.754) TCGA-D7-A4YV-01 6 25777084 25777084 A G SLC17A4 Missense_Mutation p.R389G 0.23 tolerated(0.09) possibly_damaging(0.527) TCGA-D7-A4YV-01 6 26199464 26199464 C T HIST1H2AD Missense_Mutation p.G3E 0.12 deleterious_low_confidence(0.03) unknown(0) TCGA-D7-A4YV-01 6 26501501 26501501 C T BTN1A1 5'UTR 0.24 TCGA-D7-A4YV-01 6 27100413 27100413 G A HIST1H2BJ Silent p.S39S 0.08 TCGA-D7-A4YV-01 6 27115219 27115219 G A HIST1H2AH Silent p.A104A 0.31 TCGA-D7-A4YV-01 6 27782855 27782855 A - HIST1H2BM Frame_Shift_Del p.G14Afs*33 0.19 TCGA-D7-A4YV-01 6 30681832 30681832 G T MDC1 Missense_Mutation p.L89I 0.17 deleterious(0.01) probably_damaging(0.988) TCGA-D7-A4YV-01 6 31474135 31474135 C T MICB Missense_Mutation p.R181C 0.29 tolerated(0.18) possibly_damaging(0.717) TCGA-D7-A4YV-01 6 31500674 31500674 G A DDX39B Silent p.F250F 0.36 TCGA-D7-A4YV-01 6 31919130 31919131 GA - CFB Frame_Shift_Del p.D1161Cfs*8 0.21 TCGA-D7-A4YV-01 6 33288600 33288600 G A DAXX Nonsense_Mutation p.R318* 0.21 TCGA-D7-A4YV-01 6 33423758 33423758 A C ZBTB9 Missense_Mutation p.E294A 0.27 tolerated(0.07) benign(0.355) TCGA-D7-A4YV-01 6 34101001 34101001 G A GRM4 Silent p.N91N 0.28 TCGA-D7-A4YV-01 6 35210956 35210956 C T SCUBE3 Nonsense_Mutation p.R618* 0.26 TCGA-D7-A4YV-01 6 36339242 36339242 G T ETV7 Missense_Mutation p.P177T 0.27 deleterious(0.04) benign(0.066) TCGA-D7-A4YV-01 6 38831683 38831683 T C DNAH8 Silent p.D1898D 0.25 TCGA-D7-A4YV-01 6 41562613 41562613 C T FOXP4 Silent p.A514A 0.19 TCGA-D7-A4YV-01 6 42141263 42141263 G A GUCA1A 5'UTR 0.21 TCGA-D7-A4YV-01 6 42641611 42641611 G - UBR2 Frame_Shift_Del p.C1390Lfs*20 0.14 TCGA-D7-A4YV-01 6 43325106 43325106 G A ZNF318 Nonsense_Mutation p.R316* 0.22 TCGA-D7-A4YV-01 6 46107818 46107818 T C ENPP4 Silent p.N166N 0.38 TCGA-D7-A4YV-01 6 47254169 47254169 C T TNFRSF21 Missense_Mutation p.V87I 0.25 tolerated(0.1) benign(0.116) TCGA-D7-A4YV-01 6 49754076 49754076 C A PGK2 Missense_Mutation p.K275N 0.26 deleterious(0.05) benign(0.018) TCGA-D7-A4YV-01 6 53989505 53989505 G - MLIP Frame_Shift_Del p.I154Lfs*11 0.25 TCGA-D7-A4YV-01 6 55623807 55623807 G A BMP5 Missense_Mutation p.T404I 0.27 deleterious(0) probably_damaging(0.976) TCGA-D7-A4YV-01 6 56470699 56470699 A T DST Intron 0.24 TCGA-D7-A4YV-01 6 66044985 66044985 A G EYS Missense_Mutation p.Y552H 0.24 tolerated(0.11) benign(0.027) TCGA-D7-A4YV-01 6 7727711 7727711 C - BMP6 Frame_Shift_Del p.P176Rfs*25 0.29 TCGA-D7-A4YV-01 6 80751906 80751906 G - TTK Frame_Shift_Del p.G855Efs*38 0.29 TCGA-D7-A4YV-01 6 83845559 83845559 G A DOPEY1 Missense_Mutation p.S1031N 0.32 tolerated(0.83) benign(0) TCGA-D7-A4YV-01 6 88234285 88234286 AG - RARS2 Frame_Shift_Del p.Y322Cfs*16 0.21 TCGA-D7-A4YV-01 6 89808605 89808605 G A SRSF12 Missense_Mutation p.R160W 0.25 deleterious(0) benign(0.09) TCGA-D7-A4YV-01 6 90052126 90052126 C T UBE2J1 Missense_Mutation p.D52N 0.14 deleterious(0) probably_damaging(0.951) TCGA-D7-A4YV-01 6 96652014 96652014 G A FUT9 Missense_Mutation p.R328Q 0.27 tolerated(0.58) benign(0.001) TCGA-D7-A4YV-01 7 100153232 100153232 G A AGFG2 Splice_Site p.X251_splice 0.27 TCGA-D7-A4YV-01 7 100285170 100285170 G - GIGYF1 Frame_Shift_Del p.L111Wfs*234 0.32 TCGA-D7-A4YV-01 7 100350136 100350136 C - ZAN Frame_Shift_Del p.T805Lfs*196 0.22 TCGA-D7-A4YV-01 7 100457805 100457805 G A SLC12A9 Missense_Mutation p.R390Q 0.22 tolerated(0.37) benign(0.006) TCGA-D7-A4YV-01 7 100609602 100609602 G T MUC3A Missense_Mutation p.R778S 0.26 deleterious(0) probably_damaging(0.911) TCGA-D7-A4YV-01 7 100679976 100679976 C T MUC17 Missense_Mutation p.P1760L 0.23 benign(0.059) TCGA-D7-A4YV-01 7 100684965 100684965 C A MUC17 Missense_Mutation p.P3423H 0.06 possibly_damaging(0.89) TCGA-D7-A4YV-01 7 101845023 101845023 C T CUX1 Missense_Mutation p.R827C 0.19 deleterious(0.01) unknown(0) TCGA-D7-A4YV-01 7 107340600 107340600 A - SLC26A4 Frame_Shift_Del p.K564Nfs*19 0.21 TCGA-D7-A4YV-01 7 10973243 10973243 G A NDUFA4 3'UTR 0.25 TCGA-D7-A4YV-01 7 112127027 112127027 C T LSMEM1 Silent p.S59S 0.25 TCGA-D7-A4YV-01 7 117067496 117067496 G A ASZ1 Nonsense_Mutation p.R7* 0.26 TCGA-D7-A4YV-01 7 117067501 117067501 G C ASZ1 Missense_Mutation p.A5G 0.23 tolerated(0.42) benign(0) TCGA-D7-A4YV-01 7 123269054 123269054 A G ASB15 Missense_Mutation p.T336A 0.15 tolerated(0.48) benign(0.001) TCGA-D7-A4YV-01 7 123269134 123269134 C T ASB15 Silent p.D362D 0.19 TCGA-D7-A4YV-01 7 127225311 127225311 C T GCC1 5'UTR 0.23 TCGA-D7-A4YV-01 7 128470896 128470896 C T FLNC Missense_Mutation p.R69W 0.30 deleterious(0) probably_damaging(0.948) TCGA-D7-A4YV-01 7 129948150 129948150 C T CPA4 Nonsense_Mutation p.R236* 0.23 TCGA-D7-A4YV-01 7 134223007 134223007 C T AKR1B10 Missense_Mutation p.A268V 0.23 tolerated(0.1) benign(0.003) TCGA-D7-A4YV-01 7 134851523 134851523 C T C7orf49 Missense_Mutation p.G105E 0.32 tolerated(0.08) probably_damaging(0.999) TCGA-D7-A4YV-01 7 138269680 138269680 G A TRIM24 Missense_Mutation p.R1046H 0.24 tolerated(0.07) benign(0.26) TCGA-D7-A4YV-01 7 139833448 139833448 T - KDM7A Frame_Shift_Del p.R97Gfs*41 0.18 TCGA-D7-A4YV-01 7 141721431 141721431 G A MGAM Missense_Mutation p.V202M 0.18 deleterious(0.03) possibly_damaging(0.857) TCGA-D7-A4YV-01 7 148767808 148767808 G A ZNF786 Missense_Mutation p.R686C 0.23 deleterious(0) probably_damaging(0.998) TCGA-D7-A4YV-01 7 148768294 148768294 G A ZNF786 Missense_Mutation p.L524F 0.33 deleterious(0) probably_damaging(1) TCGA-D7-A4YV-01 7 148768295 148768295 C A ZNF786 Missense_Mutation p.K523N 0.32 deleterious(0.02) probably_damaging(0.986) TCGA-D7-A4YV-01 7 149129661 149129661 G A ZNF777 Missense_Mutation p.H568Y 0.22 deleterious(0.02) possibly_damaging(0.713) TCGA-D7-A4YV-01 7 150164346 150164346 G A GIMAP8 Missense_Mutation p.R187H 0.24 tolerated(0.28) benign(0.004) TCGA-D7-A4YV-01 7 150721322 150721322 G - ATG9B Frame_Shift_Del p.S64Pfs*42 0.43 TCGA-D7-A4YV-01 7 150747867 150747867 G - ASIC3 Frame_Shift_Del p.G280Afs*8 0.13 TCGA-D7-A4YV-01 7 151970829 151970829 G A KMT2C Silent p.L325L 0.06 TCGA-D7-A4YV-01 7 152007084 152007084 G A KMT2C Silent p.N272N 0.18 TCGA-D7-A4YV-01 7 15240865 15240865 G C AGMO 3'UTR 0.21 TCGA-D7-A4YV-01 7 154585857 154585857 C T DPP6 Missense_Mutation p.A402V 0.29 tolerated(0.07) possibly_damaging(0.857) TCGA-D7-A4YV-01 7 154598810 154598810 C T DPP6 Missense_Mutation p.L552F 0.29 deleterious(0) probably_damaging(1) TCGA-D7-A4YV-01 7 20824584 20824584 G A SP8 Silent p.G284G 0.44 TCGA-D7-A4YV-01 7 21470090 21470090 T C SP4 Missense_Mutation p.I436T 0.26 tolerated(0.1) benign(0.076) TCGA-D7-A4YV-01 7 23651149 23651149 A G CCDC126 Missense_Mutation p.N72S 0.28 tolerated(0.46) benign(0.002) TCGA-D7-A4YV-01 7 2749293 2749293 G A AMZ1 Missense_Mutation p.C264Y 0.25 deleterious(0.03) probably_damaging(0.999) TCGA-D7-A4YV-01 7 31682938 31682938 T C CCDC129 Missense_Mutation p.Y678H 0.07 tolerated(0.42) benign(0.055) TCGA-D7-A4YV-01 7 34867042 34867042 G A NPSR1 Missense_Mutation p.A170T 0.31 deleterious(0) probably_damaging(0.942) TCGA-D7-A4YV-01 7 34888209 34888209 C T NPSR1 Missense_Mutation p.A320V 0.21 tolerated(0.06) benign(0.109) TCGA-D7-A4YV-01 7 36447449 36447449 C T ANLN Missense_Mutation p.T327M 0.23 deleterious(0.01) probably_damaging(0.997) TCGA-D7-A4YV-01 7 41729812 41729812 G A INHBA Silent p.D239D 0.11 TCGA-D7-A4YV-01 7 43647881 43647881 A T STK17A Missense_Mutation p.Q149L 0.24 tolerated(0.27) benign(0.219) TCGA-D7-A4YV-01 7 43664516 43664516 G A STK17A 3'UTR 0.27 TCGA-D7-A4YV-01 7 43966106 43966106 G A UBE2D4 5'UTR 0.31 TCGA-D7-A4YV-01 7 45614596 45614596 G A ADCY1 Missense_Mutation p.A152T 0.19 tolerated(0.37) benign(0.021) TCGA-D7-A4YV-01 7 47409180 47409180 C T TNS3 Missense_Mutation p.A355T 0.19 deleterious(0) probably_damaging(0.93) TCGA-D7-A4YV-01 7 56136300 56136300 G A SUMF2 Missense_Mutation p.D84N 0.14 deleterious_low_confidence(0.01) probably_damaging(0.934) TCGA-D7-A4YV-01 7 5633137 5633137 C T FSCN1 Silent p.T190T 0.10 TCGA-D7-A4YV-01 7 57188741 57188741 T - ZNF479 Frame_Shift_Del p.K127Nfs*74 0.21 TCGA-D7-A4YV-01 7 65444796 65444796 G A GUSB Nonsense_Mutation p.R167* 0.18 TCGA-D7-A4YV-01 7 70255373 70255373 C T AUTS2 Silent p.G1057G 0.19 TCGA-D7-A4YV-01 7 72418920 72418920 C A POM121 Missense_Mutation p.L971I 0.33 tolerated_low_confidence(0.16) unknown(0) TCGA-D7-A4YV-01 7 72951688 72951688 C T BCL7B Silent p.P183P 0.05 TCGA-D7-A4YV-01 7 74197373 74197373 C T NCF1 Silent p.D181D 0.26 TCGA-D7-A4YV-01 7 74211661 74211661 G A GTF2IRD2 Silent p.I730I 0.21 TCGA-D7-A4YV-01 7 751062 751062 G A PRKAR1B Silent p.I27I 0.27 TCGA-D7-A4YV-01 7 87258228 87258228 C T RUNDC3B Missense_Mutation p.A30V 0.22 tolerated(0.16) benign(0.024) TCGA-D7-A4YV-01 7 90042012 90042012 G A CLDN12 Missense_Mutation p.A8T 0.12 deleterious(0) probably_damaging(0.998) TCGA-D7-A4YV-01 7 97823250 97823250 G A LMTK2 Missense_Mutation p.S1158N 0.13 tolerated(0.2) benign(0.009) TCGA-D7-A4YV-01 7 99709365 99709368 AGAG - TAF6 Frame_Shift_Del p.L332Ifs*2 0.31 TCGA-D7-A4YV-01 7 99752626 99752626 G A C7orf43 3'UTR 0.20 TCGA-D7-A4YV-01 7 99950250 99950250 G A PILRB 5'UTR 0.42 TCGA-D7-A4YV-01 8 103289349 103289349 T - UBR5 Frame_Shift_Del p.E2121Kfs*28 0.14 TCGA-D7-A4YV-01 8 105502897 105502897 G A LRP12 3'UTR 0.20 TCGA-D7-A4YV-01 8 105503644 105503644 G A LRP12 Missense_Mutation p.R613C 0.16 deleterious(0) possibly_damaging(0.77) TCGA-D7-A4YV-01 8 10623027 10623027 G A PINX1 Silent p.L291L 0.08 TCGA-D7-A4YV-01 8 110477474 110477474 G T PKHD1L1 Missense_Mutation p.G2805W 0.07 deleterious(0) probably_damaging(0.997) TCGA-D7-A4YV-01 8 11058331 11058331 G A XKR6 Missense_Mutation p.S173L 0.23 deleterious(0) probably_damaging(0.998) TCGA-D7-A4YV-01 8 113529433 113529433 C T CSMD3 Missense_Mutation p.R1529H 0.18 deleterious(0.04) probably_damaging(0.993) TCGA-D7-A4YV-01 8 12040122 12040122 C A FAM86B1 3'UTR 0.14 TCGA-D7-A4YV-01 8 120435322 120435322 G T NOV Nonsense_Mutation p.E342* 0.16 TCGA-D7-A4YV-01 8 124266059 124266059 C - ZHX1 Frame_Shift_Del p.D710Tfs*11 0.19 TCGA-D7-A4YV-01 8 124338217 124338217 C T ATAD2 Silent p.Q1306Q 0.04 TCGA-D7-A4YV-01 8 124382152 124382152 A T ATAD2 Missense_Mutation p.D280E 0.24 tolerated(1) benign(0) TCGA-D7-A4YV-01 8 124449545 124449545 C T WDYHV1 Missense_Mutation p.P160L 0.22 deleterious(0) benign(0.323) TCGA-D7-A4YV-01 8 124696923 124696923 C T ANXA13 Missense_Mutation p.R294H 0.15 deleterious(0.02) benign(0.042) TCGA-D7-A4YV-01 8 124810440 124810440 A G FAM91A1 Missense_Mutation p.T508A 0.15 tolerated(0.07) benign(0.041) TCGA-D7-A4YV-01 8 134025948 134025948 G T TG Silent p.L2167L 0.24 TCGA-D7-A4YV-01 8 139153505 139153505 C T FAM135B Silent p.T1242T 0.18 TCGA-D7-A4YV-01 8 139160899 139160899 T - FAM135B Frame_Shift_Del p.E1105Nfs*2 0.14 TCGA-D7-A4YV-01 8 13947853 13947853 G A SGCZ 3'UTR 0.15 TCGA-D7-A4YV-01 8 141566043 141566043 G A AGO2 Silent p.D407D 0.19 TCGA-D7-A4YV-01 8 142458045 142458045 C T SNORD5 3'Flank 0.11 TCGA-D7-A4YV-01 8 144378347 144378347 G A ZNF696 Missense_Mutation p.V168M 0.11 deleterious(0.01) probably_damaging(0.987) TCGA-D7-A4YV-01 8 144391637 144391637 T C TOP1MT Missense_Mutation p.M594V 0.21 tolerated(0.26) possibly_damaging(0.872) TCGA-D7-A4YV-01 8 144620765 144620765 G A ZC3H3 Nonsense_Mutation p.Q258* 0.16 TCGA-D7-A4YV-01 8 144877464 144877464 C T SCRIB Missense_Mutation p.E1252K 0.26 benign(0.315) TCGA-D7-A4YV-01 8 144918173 144918173 G A NRBP2 Missense_Mutation p.R449W 0.41 deleterious(0) possibly_damaging(0.884) TCGA-D7-A4YV-01 8 144994837 144994837 G A PLEC Missense_Mutation p.S3188F 0.20 possibly_damaging(0.837) TCGA-D7-A4YV-01 8 145557015 145557015 C T SCRT1 Silent p.A293A 0.12 TCGA-D7-A4YV-01 8 145693130 145693130 G C KIFC2 Missense_Mutation p.E217Q 0.21 deleterious(0.01) probably_damaging(0.997) TCGA-D7-A4YV-01 8 145740361 145740361 T C RECQL4 Missense_Mutation p.T527A 0.21 deleterious(0.05) possibly_damaging(0.584) TCGA-D7-A4YV-01 8 17612310 17612310 T - MTUS1 Frame_Shift_Del p.N336Ifs*2 0.17 TCGA-D7-A4YV-01 8 17722224 17722224 G T FGL1 Missense_Mutation p.S272R 0.10 tolerated(0.47) benign(0.003) TCGA-D7-A4YV-01 8 1893747 1893747 G A ARHGEF10 Missense_Mutation p.R1108H 0.24 tolerated(0.1) probably_damaging(0.979) TCGA-D7-A4YV-01 8 20077788 20077788 C T ATP6V1B2 Missense_Mutation p.R471C 0.13 deleterious(0) probably_damaging(1) TCGA-D7-A4YV-01 8 22548121 22548121 C T EGR3 Silent p.A343A 0.21 TCGA-D7-A4YV-01 8 23290496 23290496 G C ENTPD4 Silent p.A598A 0.20 TCGA-D7-A4YV-01 8 27311779 27311779 C - PTK2B Frame_Shift_Del p.E904Rfs*7 0.20 TCGA-D7-A4YV-01 8 27922054 27922054 G A NUGGC Silent p.D302D 0.21 TCGA-D7-A4YV-01 8 30977901 30977901 G A WRN Missense_Mutation p.C864Y 0.23 deleterious(0) probably_damaging(0.999) TCGA-D7-A4YV-01 8 35624417 35624417 C T UNC5D Intron 0.21 TCGA-D7-A4YV-01 8 37732311 37732311 C A RAB11FIP1 Missense_Mutation p.K448N 0.17 deleterious(0) probably_damaging(0.992) TCGA-D7-A4YV-01 8 38067995 38067995 A - BAG4 Frame_Shift_Del p.G456Dfs*6 0.20 TCGA-D7-A4YV-01 8 38178604 38178606 TCT - WHSC1L1 In_Frame_Del p.K598del 0.17 TCGA-D7-A4YV-01 8 38275752 38275752 C T FGFR1 Missense_Mutation p.R506Q 0.19 deleterious(0) possibly_damaging(0.537) TCGA-D7-A4YV-01 8 38810883 38810883 T G PLEKHA2 Silent p.S257S 0.17 TCGA-D7-A4YV-01 8 38832633 38832633 G A HTRA4 Missense_Mutation p.V184M 0.21 deleterious(0.01) benign(0.002) TCGA-D7-A4YV-01 8 48649857 48649857 C T CEBPD 3'UTR 0.11 TCGA-D7-A4YV-01 8 49833819 49833819 C T SNAI2 Silent p.P2P 0.18 TCGA-D7-A4YV-01 8 53548618 53548618 T C RB1CC1 Missense_Mutation p.H1450R 0.22 tolerated(0.12) benign(0.001) TCGA-D7-A4YV-01 8 61504440 61504441 - A RAB2A Frame_Shift_Ins p.E132Rfs*4 0.17 TCGA-D7-A4YV-01 8 61763086 61763086 C T CHD7 Silent p.P1813P 0.14 TCGA-D7-A4YV-01 8 62415991 62415991 C T ASPH Missense_Mutation p.R735Q 0.13 deleterious(0) probably_damaging(1) TCGA-D7-A4YV-01 8 72945932 72945932 C A TRPA1 Missense_Mutation p.A939S 0.18 tolerated(0.4) benign(0.078) TCGA-D7-A4YV-01 8 72948688 72948688 C A TRPA1 Missense_Mutation p.R797M 0.24 tolerated(0.24) benign(0.076) TCGA-D7-A4YV-01 8 75276516 75276516 G A GDAP1 Missense_Mutation p.G331R 0.15 deleterious(0) possibly_damaging(0.859) TCGA-D7-A4YV-01 8 88885496 88885496 A G DCAF4L2 Missense_Mutation p.M235T 0.18 tolerated(0.31) benign(0.002) TCGA-D7-A4YV-01 8 89053574 89053574 C T MMP16 3'UTR 0.13 TCGA-D7-A4YV-01 8 89339518 89339518 A - MMP16 5'UTR 0.22 TCGA-D7-A4YV-01 9 101014205 101014205 C T TBC1D2 Missense_Mutation p.A125T 0.21 tolerated(0.35) benign(0.012) TCGA-D7-A4YV-01 9 105757627 105757627 C T CYLC2 5'UTR 0.23 TCGA-D7-A4YV-01 9 109689884 109689884 G A ZNF462 Missense_Mutation p.A1231T 0.30 probably_damaging(0.993) TCGA-D7-A4YV-01 9 115806463 115806463 A G ZFP37 Silent p.T145T 0.18 TCGA-D7-A4YV-01 9 116811801 116811801 C T ZNF618 Missense_Mutation p.T647M 0.19 deleterious(0.01) possibly_damaging(0.616) TCGA-D7-A4YV-01 9 117849200 117849200 G A TNC Silent p.C270C 0.21 TCGA-D7-A4YV-01 9 119495677 119495677 C T ASTN2 Splice_Site p.X790_splice 0.20 TCGA-D7-A4YV-01 9 119943431 119943431 C T ASTN2 Intron 0.44 TCGA-D7-A4YV-01 9 123673661 123673661 C T TRAF1 Missense_Mutation p.R279Q 0.13 deleterious(0.01) possibly_damaging(0.906) TCGA-D7-A4YV-01 9 124906501 124906501 G A NDUFA8 3'UTR 0.25 TCGA-D7-A4YV-01 9 128347904 128347904 C T MAPKAP1 Missense_Mutation p.A201T 0.22 deleterious(0) possibly_damaging(0.792) TCGA-D7-A4YV-01 9 132397705 132397705 G A NTMT1 Missense_Mutation p.D212N 0.26 deleterious(0.04) benign(0.028) TCGA-D7-A4YV-01 9 134165625 134165625 G A PPAPDC3 Missense_Mutation p.A81T 0.18 tolerated(0.12) probably_damaging(0.99) TCGA-D7-A4YV-01 9 134404971 134404971 T A UCK1 Missense_Mutation p.D95V 0.23 deleterious(0) probably_damaging(0.954) TCGA-D7-A4YV-01 9 134405956 134405956 A G UCK1 Missense_Mutation p.L67P 0.21 deleterious(0) probably_damaging(0.999) TCGA-D7-A4YV-01 9 135114621 135114621 C T NTNG2 Silent p.N395N 0.19 TCGA-D7-A4YV-01 9 135202830 135202830 G A SETX Silent p.D1385D 0.23 TCGA-D7-A4YV-01 9 135285799 135285799 C T C9orf171 Silent p.N47N 0.33 TCGA-D7-A4YV-01 9 136513045 136513045 G T DBH Nonsense_Mutation p.G368* 0.09 TCGA-D7-A4YV-01 9 138591262 138591262 C T SOHLH1 Missense_Mutation p.V18I 0.15 tolerated(0.47) benign(0.011) TCGA-D7-A4YV-01 9 139270819 139270819 G A SNAPC4 Missense_Mutation p.R1467W 0.24 tolerated(0.08) unknown(0) TCGA-D7-A4YV-01 9 139325467 139325467 G A INPP5E Missense_Mutation p.T551M 0.35 deleterious(0) probably_damaging(0.994) TCGA-D7-A4YV-01 9 139368831 139368831 C T SEC16A Silent p.S1079S 0.38 TCGA-D7-A4YV-01 9 139390736 139390736 G - NOTCH1 Frame_Shift_Del p.S2486Rfs*103 0.40 TCGA-D7-A4YV-01 9 139402689 139402689 C T NOTCH1 Missense_Mutation p.R1107Q 0.22 tolerated(1) benign(0.001) TCGA-D7-A4YV-01 9 139904678 139904678 G A ABCA2 Missense_Mutation p.T2107M 0.31 tolerated(0.05) possibly_damaging(0.842) TCGA-D7-A4YV-01 9 139945517 139945517 C - ENTPD2 Frame_Shift_Del p.G204Vfs*171 0.19 TCGA-D7-A4YV-01 9 139994162 139994162 C T MAN1B1 Missense_Mutation p.R249C 0.29 deleterious(0) possibly_damaging(0.772) TCGA-D7-A4YV-01 9 140242530 140242530 G A EXD3 Missense_Mutation p.A664V 0.20 deleterious(0) probably_damaging(0.973) TCGA-D7-A4YV-01 9 17457549 17457549 C T CNTLN Missense_Mutation p.R1048W 0.18 deleterious(0) probably_damaging(0.96) TCGA-D7-A4YV-01 9 2644970 2644970 C T VLDLR Silent p.C400C 0.24 TCGA-D7-A4YV-01 9 27217741 27217741 C T TEK Missense_Mutation p.T1016I 0.23 deleterious(0) probably_damaging(1) TCGA-D7-A4YV-01 9 33469244 33469244 G A NOL6 Missense_Mutation p.R275C 0.31 deleterious(0) probably_damaging(1) TCGA-D7-A4YV-01 9 34381502 34381502 G A C9orf24 Intron 0.16 TCGA-D7-A4YV-01 9 35101939 35101939 C T STOML2 Missense_Mutation p.D102N 0.23 deleterious(0.03) possibly_damaging(0.883) TCGA-D7-A4YV-01 9 37861193 37861193 C T DCAF10 Silent p.R456R 0.26 TCGA-D7-A4YV-01 9 37887779 37887779 T - SLC25A51 Frame_Shift_Del p.I257Sfs*9 0.13 TCGA-D7-A4YV-01 9 70993145 70993145 A G PGM5 Missense_Mutation p.I98V 0.09 deleterious(0.01) possibly_damaging(0.573) TCGA-D7-A4YV-01 9 79910753 79910753 G A VPS13A Missense_Mutation p.R1268Q 0.16 deleterious(0.02) benign(0.279) TCGA-D7-A4YV-01 9 80430566 80430566 G A GNAQ Nonsense_Mutation p.R148* 0.30 TCGA-D7-A4YV-01 9 88272486 88272486 C T AGTPBP1 Missense_Mutation p.R258H 0.36 tolerated(0.2) benign(0.139) TCGA-D7-A4YV-01 9 95179158 95179158 G T OMD Missense_Mutation p.P228H 0.23 deleterious(0) probably_damaging(1) TCGA-D7-A4YV-01 9 96080728 96080728 C T C9orf129 Silent p.P181P 0.14 TCGA-D7-A4YV-01 9 96715033 96715033 C T BARX1 Missense_Mutation p.R193Q 0.30 deleterious(0) possibly_damaging(0.704) TCGA-D7-A4YV-01 X 102529121 102529121 G A TCEAL5 Missense_Mutation p.T124M 0.25 tolerated(0.11) possibly_damaging(0.73) TCGA-D7-A4YV-01 X 102612760 102612760 A G WBP5 Missense_Mutation p.I50V 0.24 tolerated(0.58) probably_damaging(0.987) TCGA-D7-A4YV-01 X 103432819 103432819 C T FAM199X Silent p.S276S 0.26 TCGA-D7-A4YV-01 X 105011292 105011292 T G IL1RAPL2 Missense_Mutation p.C567G 0.21 tolerated(0.31) benign(0.003) TCGA-D7-A4YV-01 X 105137885 105137885 C T NRK Nonsense_Mutation p.Q147* 0.29 TCGA-D7-A4YV-01 X 114384409 114384409 A C LRCH2 Missense_Mutation p.I559S 0.22 tolerated(0.07) benign(0.164) TCGA-D7-A4YV-01 X 128880625 128880625 G A XPNPEP2 Missense_Mutation p.R153H 0.29 tolerated(0.21) benign(0.052) TCGA-D7-A4YV-01 X 129318301 129318301 A G RAB33A Missense_Mutation p.S101G 0.07 deleterious(0) possibly_damaging(0.825) TCGA-D7-A4YV-01 X 130222771 130222771 T A ARHGAP36 3'UTR 0.28 TCGA-D7-A4YV-01 X 13058875 13058875 A G FAM9C Splice_Site p.X110_splice 0.42 TCGA-D7-A4YV-01 X 135426784 135426784 G A GPR112 Missense_Mutation p.V307I 0.20 tolerated(1) benign(0.001) TCGA-D7-A4YV-01 X 136112821 136112821 C T GPR101 Missense_Mutation p.R338H 0.24 tolerated_low_confidence(0.39) benign(0.003) TCGA-D7-A4YV-01 X 136113350 136113350 G A GPR101 Nonsense_Mutation p.Q162* 0.11 TCGA-D7-A4YV-01 X 142596775 142596775 C T SPANXN3 Missense_Mutation p.D99N 0.25 tolerated_low_confidence(0.11) possibly_damaging(0.852) TCGA-D7-A4YV-01 X 150349107 150349107 G A GPR50 Missense_Mutation p.R351H 0.26 tolerated(0.33) benign(0.001) TCGA-D7-A4YV-01 X 151869697 151869697 G T MAGEA6 Silent p.P129P 0.07 TCGA-D7-A4YV-01 X 151870148 151870148 G T MAGEA6 Nonsense_Mutation p.E280* 0.25 TCGA-D7-A4YV-01 X 151935399 151935399 C G MAGEA3 Silent p.L256L 0.27 TCGA-D7-A4YV-01 X 152225667 152225667 G - PNMA3 Frame_Shift_Del p.W89Gfs*3 0.15 TCGA-D7-A4YV-01 X 152813354 152813354 G A ATP2B3 Silent p.G340G 0.15 TCGA-D7-A4YV-01 X 153068801 153068801 G A PDZD4 3'UTR 0.18 TCGA-D7-A4YV-01 X 153599632 153599632 G - FLNA 5'UTR 0.31 TCGA-D7-A4YV-01 X 154250906 154250906 A - F8 5'UTR 0.15 TCGA-D7-A4YV-01 X 16836812 16836812 G A TXLNG Missense_Mutation p.G73D 0.06 deleterious(0.04) benign(0.02) TCGA-D7-A4YV-01 X 1712983 1712983 G A AKAP17A Missense_Mutation p.G210R 0.28 tolerated(0.07) possibly_damaging(0.854) TCGA-D7-A4YV-01 X 19560215 19560215 G - SH3KBP1 Frame_Shift_Del p.L574Cfs*39 0.11 TCGA-D7-A4YV-01 X 20153954 20153954 C T EIF1AX Missense_Mutation p.A36T 0.22 deleterious(0.03) probably_damaging(0.912) TCGA-D7-A4YV-01 X 20205970 20205970 G A RPS6KA3 Silent p.D250D 0.24 TCGA-D7-A4YV-01 X 2407150 2407150 C T ZBED1 Silent p.T537T 0.19 TCGA-D7-A4YV-01 X 2407741 2407741 G A ZBED1 Silent p.N340N 0.23 TCGA-D7-A4YV-01 X 30268938 30268938 T C MAGEB1 Missense_Mutation p.W110R 0.29 tolerated(1) benign(0) TCGA-D7-A4YV-01 X 32235152 32235152 G A DMD Missense_Mutation p.R2107W 0.18 possibly_damaging(0.835) TCGA-D7-A4YV-01 X 3235934 3235934 C T MXRA5 Missense_Mutation p.A1930T 0.24 deleterious(0) probably_damaging(0.999) TCGA-D7-A4YV-01 X 34960964 34960964 C T FAM47B Missense_Mutation p.P6S 0.17 tolerated(0.47) possibly_damaging(0.718) TCGA-D7-A4YV-01 X 46433662 46433662 G A CHST7 Missense_Mutation p.R99H 0.18 tolerated(0.17) benign(0.001) TCGA-D7-A4YV-01 X 46433912 46433912 G A CHST7 Silent p.P182P 0.20 TCGA-D7-A4YV-01 X 46434160 46434160 G A CHST7 Missense_Mutation p.R265H 0.31 deleterious(0.01) probably_damaging(0.992) TCGA-D7-A4YV-01 X 47424204 47424204 C T ARAF Missense_Mutation p.T70M 0.31 tolerated(0.13) probably_damaging(0.938) TCGA-D7-A4YV-01 X 48666716 48666716 C T HDAC6 Silent p.T263T 0.41 TCGA-D7-A4YV-01 X 48687744 48687744 G A ERAS Missense_Mutation p.D71N 0.27 deleterious(0.02) probably_damaging(0.989) TCGA-D7-A4YV-01 X 49067892 49067892 C T CACNA1F Missense_Mutation p.G1395R 0.25 tolerated(0.06) probably_damaging(0.935) TCGA-D7-A4YV-01 X 50146496 50146496 T A DGKK RNA 0.23 TCGA-D7-A4YV-01 X 51487865 51487865 A - GSPT2 Frame_Shift_Del p.K383Rfs*11 0.24 TCGA-D7-A4YV-01 X 53285133 53285133 C G IQSEC2 Missense_Mutation p.G283A 0.30 tolerated_low_confidence(0.46) benign(0.012) TCGA-D7-A4YV-01 X 53454959 53454959 C T RIBC1 Silent p.V42V 0.28 TCGA-D7-A4YV-01 X 53631667 53631667 A C HUWE1 Silent p.A875A 0.28 TCGA-D7-A4YV-01 X 57020676 57020676 T - SPIN3 Frame_Shift_Del p.K235Nfs*21 0.20 TCGA-D7-A4YV-01 X 63555963 63555963 G T MTMR8 Missense_Mutation p.Q383K 0.18 tolerated(0.08) benign(0.071) TCGA-D7-A4YV-01 X 69243069 69243069 C T EDA Silent p.G168G 0.21 TCGA-D7-A4YV-01 X 70325942 70325942 A - CXorf65 Frame_Shift_Del p.F53Sfs*2 0.25 TCGA-D7-A4YV-01 X 70757854 70757854 G A OGT Missense_Mutation p.A132T 0.22 tolerated(0.15) possibly_damaging(0.529) TCGA-D7-A4YV-01 X 74376093 74376093 C T ABCB7 Silent p.A5A 0.32 TCGA-D7-A4YV-01 X 75393486 75393489 GTGA - PBDC1 Splice_Site p.X32_splice 0.25 TCGA-D7-A4YV-01 X 76939918 76939918 A G ATRX Missense_Mutation p.V277A 0.21 probably_damaging(0.994) TCGA-D7-A4YV-01 X 77150883 77150883 A G MAGT1 Missense_Mutation p.C41R 0.24 tolerated(0.38) benign(0.001) TCGA-D7-A4YV-01 X 82763852 82763852 G A POU3F4 Missense_Mutation p.E174K 0.26 tolerated(0.74) benign(0.018) TCGA-D7-A4YV-01 X 8503632 8503632 G A KAL1 Silent p.S614S 0.23 TCGA-D7-A4YV-01 X 91873765 91873765 C T PCDH11X Silent p.C1290C 0.04 TCGA-D7-A4YV-01 X 96013170 96013170 C T DIAPH2 Silent p.N120N 0.21 TCGA-D7-A4YV-01 X 96724833 96724833 T C DIAPH2 Intron 0.33 TCGA-D7-A4YV-01 X 99956505 99956505 C T SYTL4 Missense_Mutation p.R92H 0.26 deleterious(0.03) possibly_damaging(0.79) TCGA-D7-A4YX-01 10 30611466 30611466 C T MTPAP Missense_Mutation p.R358Q 0.22 deleterious(0) probably_damaging(0.98) TCGA-D7-A4YX-01 10 64565194 64565194 C T ADO Silent p.Y125Y 0.45 TCGA-D7-A4YX-01 11 123481039 123481039 C T GRAMD1B Nonsense_Mutation p.R495* 0.20 TCGA-D7-A4YX-01 11 130341220 130341220 G C ADAMTS15 Missense_Mutation p.V674L 0.24 deleterious(0.02) benign(0.153) TCGA-D7-A4YX-01 11 133402180 133402180 T A OPCML Missense_Mutation p.T14S 0.35 tolerated(0.51) benign(0.017) TCGA-D7-A4YX-01 11 33689480 33689480 C A KIAA1549L Missense_Mutation p.S1777Y 0.28 deleterious(0) probably_damaging(0.994) TCGA-D7-A4YX-01 11 47498889 47498889 G C CELF1 Silent p.L310L 0.22 TCGA-D7-A4YX-01 11 56043465 56043465 T C OR5T1 Silent p.C117C 0.28 TCGA-D7-A4YX-01 11 57381834 57381834 G A SERPING1 Missense_Mutation p.C428Y 0.29 deleterious(0) probably_damaging(1) TCGA-D7-A4YX-01 11 62416322 62416322 C T INTS5 Silent p.L410L 0.15 TCGA-D7-A4YX-01 11 65688066 65688066 G A DRAP1 Missense_Mutation p.R119Q 0.35 deleterious(0.05) possibly_damaging(0.602) TCGA-D7-A4YX-01 11 72295692 72295692 G A PDE2A Silent p.D480D 0.20 TCGA-D7-A4YX-01 12 13716623 13716623 C T GRIN2B Silent p.T1183T 0.29 TCGA-D7-A4YX-01 12 29423539 29423539 C A FAR2 Missense_Mutation p.Q53K 0.26 tolerated(0.09) probably_damaging(0.994) TCGA-D7-A4YX-01 12 6442257 6442257 T C TNFRSF1A Missense_Mutation p.N177D 0.17 tolerated(0.12) benign(0.102) TCGA-D7-A4YX-01 12 7585200 7585200 C A CD163L1 Missense_Mutation p.C193F 0.29 deleterious(0) probably_damaging(0.99) TCGA-D7-A4YX-01 12 77417809 77417809 C T E2F7 Missense_Mutation p.G908S 0.23 tolerated_low_confidence(1) benign(0.002) TCGA-D7-A4YX-01 13 114265370 114265370 C T TFDP1 Silent p.P24P 0.26 TCGA-D7-A4YX-01 13 34409298 34409298 C T RFC3 Missense_Mutation p.R275C 0.34 deleterious(0) probably_damaging(1) TCGA-D7-A4YX-01 13 53421999 53421999 G A PCDH8 Silent p.G191G 0.23 TCGA-D7-A4YX-01 14 71542925 71542925 C T PCNX Missense_Mutation p.T1709M 0.27 deleterious(0.02) benign(0.337) TCGA-D7-A4YX-01 14 92908491 92908491 C T SLC24A4 Missense_Mutation p.T151M 0.24 deleterious(0) probably_damaging(0.953) TCGA-D7-A4YX-01 15 27018115 27018115 C T GABRB3 5'UTR 0.38 TCGA-D7-A4YX-01 15 48782211 48782211 G A FBN1 Silent p.G973G 0.24 TCGA-D7-A4YX-01 15 92459375 92459375 C T SLCO3A1 Silent p.C111C 0.34 TCGA-D7-A4YX-01 16 84256365 84256365 G A KCNG4 Nonsense_Mutation p.R340* 0.16 TCGA-D7-A4YX-01 17 20911279 20911279 G A USP22 Silent p.S378S 0.32 TCGA-D7-A4YX-01 17 40263479 40263479 G A DHX58 Missense_Mutation p.R69C 0.26 deleterious(0.01) possibly_damaging(0.901) TCGA-D7-A4YX-01 17 74169807 74169807 C T RNF157 Missense_Mutation p.R91Q 0.29 deleterious(0) probably_damaging(0.966) TCGA-D7-A4YX-01 18 30672724 30672724 C A CCDC178 Splice_Site p.X796_splice 0.15 TCGA-D7-A4YX-01 18 6975032 6975032 C G LAMA1 Missense_Mutation p.D2165H 0.48 deleterious(0) probably_damaging(0.999) TCGA-D7-A4YX-01 19 38985210 38985210 C T RYR1 Silent p.L2165L 0.26 TCGA-D7-A4YX-01 19 56693573 56693573 G A GALP Missense_Mutation p.G57R 0.19 tolerated(1) benign(0) TCGA-D7-A4YX-01 1 107867165 107867165 C T NTNG1 Nonsense_Mutation p.R170* 0.22 TCGA-D7-A4YX-01 1 11766500 11766500 C T DRAXIN Missense_Mutation p.P62L 0.57 tolerated(1) benign(0.003) TCGA-D7-A4YX-01 1 120263849 120263849 C T PHGDH Silent p.N65N 0.20 TCGA-D7-A4YX-01 1 145304580 145304580 G C NBPF10 Missense_Mutation p.D505H 0.11 probably_damaging(0.945) TCGA-D7-A4YX-01 1 153277444 153277444 C T PGLYRP3 Missense_Mutation p.A119T 0.23 tolerated(0.22) possibly_damaging(0.668) TCGA-D7-A4YX-01 1 156841515 156841515 G A NTRK1 Missense_Mutation p.R273Q 0.25 tolerated(0.57) probably_damaging(0.998) TCGA-D7-A4YX-01 1 158390292 158390292 C T OR10K2 Missense_Mutation p.R122H 0.26 deleterious(0.02) possibly_damaging(0.548) TCGA-D7-A4YX-01 1 158624513 158624513 C T SPTA1 Missense_Mutation p.G975E 0.31 tolerated(0.56) benign(0.023) TCGA-D7-A4YX-01 1 17914087 17914087 C G ARHGEF10L Missense_Mutation p.P57R 0.58 tolerated_low_confidence(0.07) benign(0.031) TCGA-D7-A4YX-01 1 182025649 182025649 G A ZNF648 Silent p.S499S 0.28 TCGA-D7-A4YX-01 1 220320847 220320847 G T IARS2 Missense_Mutation p.R970L 0.33 deleterious(0.04) benign(0.115) TCGA-D7-A4YX-01 1 223990025 223990025 G A TP53BP2 Missense_Mutation p.P340S 0.32 tolerated(0.09) benign(0.309) TCGA-D7-A4YX-01 1 241959601 241959601 G A WDR64 Missense_Mutation p.V1031I 0.33 tolerated(0.63) benign(0.001) TCGA-D7-A4YX-01 1 248458154 248458154 C A OR2T12 Missense_Mutation p.V243L 0.21 tolerated(1) benign(0.002) TCGA-D7-A4YX-01 1 27101189 27101196 GTTGCTCA - ARID1A Frame_Shift_Del p.V1491Afs*9 0.51 TCGA-D7-A4YX-01 1 31188062 31188062 C T MATN1 Silent p.T434T 0.20 TCGA-D7-A4YX-01 20 2308983 2308983 C T TGM3 Silent p.D435D 0.18 TCGA-D7-A4YX-01 20 44686280 44686280 G A SLC12A5 3'UTR 0.31 TCGA-D7-A4YX-01 20 62642823 62642823 C T PRPF6 Silent p.N497N 0.16 TCGA-D7-A4YX-01 21 31538677 31538677 C T CLDN17 Missense_Mutation p.A87T 0.27 deleterious(0) probably_damaging(0.911) TCGA-D7-A4YX-01 22 18355614 18355614 T C MICAL3 Intron 0.25 TCGA-D7-A4YX-01 2 128263154 128263154 C G IWS1 Missense_Mutation p.E109Q 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.521) TCGA-D7-A4YX-01 2 166535217 166535217 C T CSRNP3 Missense_Mutation p.R238C 0.16 deleterious(0) probably_damaging(0.997) TCGA-D7-A4YX-01 2 170361605 170361605 C G BBS5 3'UTR 0.38 TCGA-D7-A4YX-01 2 186673370 186673370 C A FSIP2 Missense_Mutation p.T6535K 0.24 benign(0.052) TCGA-D7-A4YX-01 2 26203456 26203456 G A KIF3C Missense_Mutation p.P444L 0.21 probably_damaging(0.913) TCGA-D7-A4YX-01 2 26781408 26781408 G A OTOF Missense_Mutation p.S11L 0.26 tolerated(0.06) benign(0.15) TCGA-D7-A4YX-01 3 128200036 128200038 CTC - GATA2 In_Frame_Del p.E423del 0.34 TCGA-D7-A4YX-01 3 133467336 133467336 C T TF Missense_Mutation p.R42C 0.23 deleterious(0) probably_damaging(0.988) TCGA-D7-A4YX-01 3 164716350 164716350 G T SI Missense_Mutation p.D1506E 0.23 tolerated(0.13) benign(0.035) TCGA-D7-A4YX-01 3 178917478 178917478 G A PIK3CA Missense_Mutation p.G118D 0.24 tolerated(0.05) possibly_damaging(0.704) TCGA-D7-A4YX-01 3 27184958 27184958 C A NEK10 Missense_Mutation p.Q1006H 0.35 tolerated(0.16) benign(0.119) TCGA-D7-A4YX-01 3 41266599 41266599 G A CTNNB1 Silent p.L132L 0.91 TCGA-D7-A4YX-01 3 41266671 41266671 G C CTNNB1 Silent p.L156L 0.91 TCGA-D7-A4YX-01 3 49739039 49739039 G A RNF123 Missense_Mutation p.E465K 0.33 deleterious(0.03) probably_damaging(0.985) TCGA-D7-A4YX-01 3 53842763 53842763 G A CACNA1D Missense_Mutation p.R1966H 0.30 deleterious_low_confidence(0.04) possibly_damaging(0.754) TCGA-D7-A4YX-01 3 97655739 97655739 G A CRYBG3 Missense_Mutation p.R883H 0.29 deleterious(0.02) possibly_damaging(0.806) TCGA-D7-A4YX-01 4 134073082 134073082 C T PCDH10 Missense_Mutation p.P596L 0.30 deleterious(0) probably_damaging(1) TCGA-D7-A4YX-01 4 5586352 5586352 G A EVC2 Missense_Mutation p.R1019W 0.35 deleterious(0.01) possibly_damaging(0.517) TCGA-D7-A4YX-01 4 75971375 75971375 A T PARM1 Missense_Mutation p.H284L 0.32 deleterious(0) probably_damaging(0.999) TCGA-D7-A4YX-01 4 85660241 85660241 C T WDFY3 Missense_Mutation p.A2166T 0.20 tolerated(0.43) benign(0.032) TCGA-D7-A4YX-01 5 14291165 14291165 A T TRIO Missense_Mutation p.K294I 0.28 possibly_damaging(0.522) TCGA-D7-A4YX-01 5 150901482 150901482 G C FAT2 Missense_Mutation p.R3558G 0.21 possibly_damaging(0.577) TCGA-D7-A4YX-01 5 159830242 159830242 G T SLU7 3'UTR 0.24 TCGA-D7-A4YX-01 5 172744700 172744700 G A STC2 3'UTR 0.30 TCGA-D7-A4YX-01 5 180659794 180659794 G A TRIM41 Missense_Mutation p.A349T 0.20 tolerated(0.35) benign(0.01) TCGA-D7-A4YX-01 5 61681398 61681398 C T KIF2A 3'UTR 0.36 TCGA-D7-A4YX-01 5 79041267 79041267 G A CMYA5 Missense_Mutation p.V3653I 0.34 possibly_damaging(0.53) TCGA-D7-A4YX-01 5 95067361 95067361 G A RHOBTB3 5'UTR 0.26 TCGA-D7-A4YX-01 5 96066545 96066545 C T CAST Missense_Mutation p.S163F 0.26 deleterious(0) probably_damaging(0.978) TCGA-D7-A4YX-01 6 169648658 169648658 G T THBS2 Missense_Mutation p.Q155K 0.21 tolerated(0.29) benign(0.437) TCGA-D7-A4YX-01 6 32168694 32168694 C T NOTCH4 Missense_Mutation p.R1410H 0.28 tolerated(0.07) probably_damaging(0.961) TCGA-D7-A4YX-01 7 100403165 100403165 C T EPHB4 Missense_Mutation p.R879Q 0.22 tolerated(0.06) probably_damaging(0.986) TCGA-D7-A4YX-01 7 20198552 20198553 TG - MACC1 Frame_Shift_Del p.H477Qfs*7 0.14 TCGA-D7-A4YX-01 7 20668315 20668315 G A ABCB5 Missense_Mutation p.R38H 0.18 deleterious(0.02) probably_damaging(0.919) TCGA-D7-A4YX-01 7 5984811 5984811 T C RSPH10B Splice_Site p.X472_splice 0.11 TCGA-D7-A4YX-01 8 102705079 102705079 C T NCALD Missense_Mutation p.E142K 0.12 deleterious(0.01) benign(0.138) TCGA-D7-A4YX-01 8 10388948 10388948 C T PRSS55 Missense_Mutation p.S164L 0.17 deleterious(0.03) benign(0.212) TCGA-D7-A4YX-01 8 133811379 133811379 C T PHF20L1 Silent p.I156I 0.33 TCGA-D7-A4YX-01 8 1900886 1900886 C T ARHGEF10 Missense_Mutation p.S1138L 0.19 tolerated(0.64) benign(0.031) TCGA-D7-A4YX-01 8 27288802 27288802 G T PTK2B Intron 0.44 TCGA-D7-A4YX-01 8 2820838 2820838 A G CSMD1 Silent p.S3120S 0.20 TCGA-D7-A4YX-01 8 65494237 65494237 C T BHLHE22 Missense_Mutation p.A297V 0.14 deleterious(0.01) possibly_damaging(0.734) TCGA-D7-A4YX-01 8 81905488 81905488 C T PAG1 5'UTR 0.41 TCGA-D7-A4YX-01 8 95892417 95892417 A G INTS8 Silent p.R981R 0.38 TCGA-D7-A4YX-01 9 136310894 136310894 C T ADAMTS13 Silent p.H895H 0.17 TCGA-D7-A4YX-01 9 32633111 32633111 G A TAF1L Nonsense_Mutation p.R823* 0.25 TCGA-D7-A4YX-01 X 117575479 117575479 T C WDR44 Missense_Mutation p.V708A 0.50 deleterious(0.03) possibly_damaging(0.841) TCGA-D7-A4YX-01 X 153713852 153713853 - T UBL4A 3'UTR 0.38 TCGA-D7-A4YX-01 X 15402066 15402066 C T FIGF Translation_Start_Site p.M1? 0.55 deleterious(0) probably_damaging(0.991) TCGA-D7-A4YX-01 X 50350385 50350385 C T SHROOM4 Missense_Mutation p.A1253T 0.40 tolerated(0.45) benign(0.056) TCGA-D7-A4YY-01 10 100904111 100904111 T C HPSE2 Missense_Mutation p.K165R 0.38 tolerated(0.16) benign(0.012) TCGA-D7-A4YY-01 10 101180555 101180555 G A GOT1 Silent p.R42R 0.33 TCGA-D7-A4YY-01 10 104182697 104182697 G T FBXL15 Missense_Mutation p.V284L 0.39 tolerated(0.06) probably_damaging(0.935) TCGA-D7-A4YY-01 10 108469079 108469079 G A SORCS1 Nonsense_Mutation p.R349* 0.49 TCGA-D7-A4YY-01 10 118236283 118236283 A G PNLIPRP3 Missense_Mutation p.K431R 0.46 tolerated(0.23) benign(0.081) TCGA-D7-A4YY-01 10 119307706 119307706 C T EMX2 Missense_Mutation p.A241V 0.23 tolerated(0.34) benign(0.003) TCGA-D7-A4YY-01 10 131666125 131666125 C - EBF3 Frame_Shift_Del p.G269Vfs*6 0.31 TCGA-D7-A4YY-01 10 135096606 135096606 G A TUBGCP2 Silent p.C783C 0.30 TCGA-D7-A4YY-01 10 20290822 20290822 G A PLXDC2 Silent p.T77T 0.42 TCGA-D7-A4YY-01 10 24832909 24832909 G T KIAA1217 Missense_Mutation p.K1570N 0.34 deleterious(0) probably_damaging(0.998) TCGA-D7-A4YY-01 10 43650701 43650701 C - CSGALNACT2 Frame_Shift_Del p.Q37Rfs*39 0.28 TCGA-D7-A4YY-01 10 50532451 50532451 G T C10orf71 Nonsense_Mutation p.G621* 0.38 TCGA-D7-A4YY-01 10 53457958 53457958 C A CSTF2T Missense_Mutation p.R451M 0.29 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-D7-A4YY-01 10 5435603 5435603 G A TUBAL3 Silent p.Y406Y 0.48 TCGA-D7-A4YY-01 10 61932125 61932125 C T ANK3 Missense_Mutation p.G807S 0.40 probably_damaging(1) TCGA-D7-A4YY-01 10 64966902 64966903 - T JMJD1C Frame_Shift_Ins p.N1509Kfs*12 0.23 TCGA-D7-A4YY-01 10 71139813 71139813 G A HK1 Silent p.T413T 0.34 TCGA-D7-A4YY-01 10 7269899 7269899 C A SFMBT2 Missense_Mutation p.G374V 0.39 deleterious(0) probably_damaging(0.991) TCGA-D7-A4YY-01 10 75187827 75187829 TTC - MSS51 In_Frame_Del p.E72del 0.36 TCGA-D7-A4YY-01 10 75574931 75574931 C T CAMK2G Missense_Mutation p.A505T 0.32 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-D7-A4YY-01 10 79789145 79789145 C T POLR3A Silent p.R7R 0.33 TCGA-D7-A4YY-01 10 85901266 85901266 G A GHITM Missense_Mutation p.A4T 0.37 deleterious(0.05) probably_damaging(0.985) TCGA-D7-A4YY-01 10 85992427 85992427 G A LRIT1 Silent p.N376N 0.36 TCGA-D7-A4YY-01 11 100168355 100168355 A C CNTN5 Splice_Site p.X772_splice 0.47 TCGA-D7-A4YY-01 11 102711277 102711277 C A MMP3 Missense_Mutation p.G225C 0.30 deleterious(0) probably_damaging(1) TCGA-D7-A4YY-01 11 107207380 107207381 - A CWF19L2 Frame_Shift_Ins p.L754Ffs*4 0.67 TCGA-D7-A4YY-01 11 107832989 107832989 G A RAB39A Missense_Mutation p.G182E 0.27 deleterious(0) probably_damaging(0.957) TCGA-D7-A4YY-01 11 111965589 111965589 G T SDHD Missense_Mutation p.K125N 0.46 tolerated(0.5) benign(0.005) TCGA-D7-A4YY-01 11 113222930 113222930 G A TTC12 Splice_Site p.X482_splice 0.32 TCGA-D7-A4YY-01 11 114442059 114442059 C A NXPE4 Missense_Mutation p.E412D 0.29 tolerated(1) benign(0.09) TCGA-D7-A4YY-01 11 115047097 115047097 A - CADM1 3'UTR 0.26 TCGA-D7-A4YY-01 11 116717249 116717249 C A SIK3 Missense_Mutation p.G1219C 0.29 deleterious_low_confidence(0) possibly_damaging(0.759) TCGA-D7-A4YY-01 11 117691435 117691435 A G FXYD2 Intron 0.44 TCGA-D7-A4YY-01 11 118392022 118392022 G A KMT2A Missense_Mutation p.G3845S 0.36 probably_damaging(1) TCGA-D7-A4YY-01 11 118770112 118770112 G - BCL9L Frame_Shift_Del p.P1171Rfs*32 0.36 TCGA-D7-A4YY-01 11 120837915 120837915 C T GRIK4 Missense_Mutation p.R760W 0.33 deleterious(0) probably_damaging(1) TCGA-D7-A4YY-01 11 17417236 17417236 C T ABCC8 Missense_Mutation p.A1410T 0.60 tolerated(0.11) benign(0.104) TCGA-D7-A4YY-01 11 18736137 18736137 G A IGSF22 Silent p.D522D 0.38 TCGA-D7-A4YY-01 11 2167646 2167646 G A INS-IGF2 3'Flank 0.40 TCGA-D7-A4YY-01 11 27360303 27360303 A - CCDC34 3'UTR 0.32 TCGA-D7-A4YY-01 11 30926580 30926580 C T DCDC1 Silent p.V1412V 0.36 TCGA-D7-A4YY-01 11 43413370 43413370 G T TTC17 Splice_Site p.X178_splice 0.07 TCGA-D7-A4YY-01 11 46403891 46403892 - G MDK Frame_Shift_Ins p.P44Afs*46 0.17 TCGA-D7-A4YY-01 11 62397125 62397125 C T GANAB Missense_Mutation p.R612H 0.24 deleterious(0) probably_damaging(1) TCGA-D7-A4YY-01 11 62567923 62567923 C T NXF1 Silent p.G314G 0.17 TCGA-D7-A4YY-01 11 64064727 64064727 C T KCNK4 Silent p.I150I 0.38 TCGA-D7-A4YY-01 11 64714903 64714903 A G C11orf85 Missense_Mutation p.M139T 0.27 tolerated(0.15) possibly_damaging(0.774) TCGA-D7-A4YY-01 11 65714876 65714876 C - TSGA10IP RNA 0.29 TCGA-D7-A4YY-01 11 65810630 65810630 C T GAL3ST3 Missense_Mutation p.R215H 0.38 tolerated(0.64) benign(0.017) TCGA-D7-A4YY-01 11 65828076 65828076 A - SF3B2 Frame_Shift_Del p.M553Cfs*32 0.28 TCGA-D7-A4YY-01 11 72410591 72410591 C A ARAP1 Missense_Mutation p.S770I 0.25 deleterious(0) possibly_damaging(0.904) TCGA-D7-A4YY-01 11 75282887 75282887 G A SERPINH1 Missense_Mutation p.R339H 0.32 tolerated(0.07) possibly_damaging(0.597) TCGA-D7-A4YY-01 11 76796090 76796090 G A CAPN5 Missense_Mutation p.R53Q 0.48 deleterious(0) probably_damaging(0.999) TCGA-D7-A4YY-01 11 801298 801299 - G PIDD Frame_Shift_Ins p.L517Pfs*50 0.22 TCGA-D7-A4YY-01 11 82643006 82643006 A G C11orf82 Missense_Mutation p.H209R 0.10 deleterious(0.02) benign(0.006) TCGA-D7-A4YY-01 11 89431599 89431599 C A FOLH1B RNA 0.32 TCGA-D7-A4YY-01 11 93471453 93471453 T - TAF1D Frame_Shift_Del p.K94Rfs*26 0.35 TCGA-D7-A4YY-01 11 95520842 95520842 G A FAM76B Silent p.S51S 0.43 TCGA-D7-A4YY-01 12 102179837 102179837 T - GNPTAB Frame_Shift_Del p.N175Tfs*38 0.14 TCGA-D7-A4YY-01 12 120612992 120612992 C T GCN1L1 Missense_Mutation p.V356I 0.33 benign(0.002) TCGA-D7-A4YY-01 12 124094579 124094579 G A DDX55 Silent p.A215A 0.30 TCGA-D7-A4YY-01 12 124399436 124399436 G A DNAH10 Missense_Mutation p.V3420I 0.29 benign(0.104) TCGA-D7-A4YY-01 12 15067594 15067594 G A ERP27 3'UTR 0.33 TCGA-D7-A4YY-01 12 23689453 23689453 C T SOX5 Missense_Mutation p.R641H 0.43 deleterious(0) probably_damaging(0.996) TCGA-D7-A4YY-01 12 27908309 27908309 A - MRPS35 Frame_Shift_Del p.N301Mfs*16 0.29 TCGA-D7-A4YY-01 12 34179403 34179404 - T ALG10 Frame_Shift_Ins p.V328Cfs*18 0.27 TCGA-D7-A4YY-01 12 3806150 3806150 C T EFCAB4B Missense_Mutation p.G6R 0.37 tolerated_low_confidence(0.91) benign(0.001) TCGA-D7-A4YY-01 12 41967761 41967761 T C PDZRN4 3'UTR 0.50 TCGA-D7-A4YY-01 12 438150 438150 G A KDM5A Missense_Mutation p.R607C 0.24 deleterious(0) probably_damaging(0.975) TCGA-D7-A4YY-01 12 4460533 4460533 C T C12orf5 Missense_Mutation p.T124M 0.29 deleterious(0) probably_damaging(0.996) TCGA-D7-A4YY-01 12 48106392 48106392 T - ENDOU Frame_Shift_Del p.G294Afs*82 0.33 TCGA-D7-A4YY-01 12 5154292 5154292 G A KCNA5 Missense_Mutation p.V327M 0.34 deleterious(0.02) probably_damaging(0.994) TCGA-D7-A4YY-01 12 53499020 53499020 T C SOAT2 Silent p.L90L 0.67 TCGA-D7-A4YY-01 12 54910752 54910752 T C NCKAP1L Silent p.D357D 0.38 TCGA-D7-A4YY-01 12 55759657 55759657 T G OR6C75 Missense_Mutation p.F255V 0.38 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-D7-A4YY-01 12 56075989 56075989 C T METTL7B Nonsense_Mutation p.Q151* 0.38 TCGA-D7-A4YY-01 12 57574523 57574523 C T LRP1 Silent p.S1820S 0.32 TCGA-D7-A4YY-01 12 57843601 57843601 A C INHBC Silent p.A285A 0.38 TCGA-D7-A4YY-01 12 6631161 6631162 - T NCAPD2 Frame_Shift_Ins p.G639Wfs*9 0.22 TCGA-D7-A4YY-01 12 66731961 66731962 - A HELB 3'UTR 0.50 TCGA-D7-A4YY-01 12 69753780 69753780 C T YEATS4 Missense_Mutation p.P10S 0.33 tolerated(0.21) benign(0.028) TCGA-D7-A4YY-01 12 76784264 76784264 G T OSBPL8 Missense_Mutation p.P368H 0.24 tolerated(0.09) benign(0.443) TCGA-D7-A4YY-01 12 8670815 8670815 G T CLEC4D Missense_Mutation p.E59D 0.22 tolerated(0.57) benign(0.006) TCGA-D7-A4YY-01 13 30096482 30096482 G A SLC7A1 Silent p.I387I 0.32 TCGA-D7-A4YY-01 13 33275470 33275470 C G PDS5B Missense_Mutation p.T584S 0.29 tolerated(0.11) benign(0.198) TCGA-D7-A4YY-01 13 35733663 35733663 A - NBEA Frame_Shift_Del p.N1121Mfs*9 0.28 TCGA-D7-A4YY-01 13 36049807 36049807 C T MAB21L1 Missense_Mutation p.E157K 0.43 tolerated(0.06) possibly_damaging(0.895) TCGA-D7-A4YY-01 13 52277737 52277737 T C WDFY2 Silent p.F95F 0.44 TCGA-D7-A4YY-01 13 52539057 52539057 T G ATP7B Missense_Mutation p.K607T 0.38 tolerated(0.08) probably_damaging(0.961) TCGA-D7-A4YY-01 13 53422475 53422475 G A PCDH8 Nonsense_Mutation p.R33* 0.34 TCGA-D7-A4YY-01 13 92051456 92051456 G A GPC5 Silent p.P52P 0.34 TCGA-D7-A4YY-01 13 95723915 95723915 C T ABCC4 Splice_Site p.X1070_splice 0.19 TCGA-D7-A4YY-01 13 97995278 97995278 C T MBNL2 Silent p.F116F 0.32 TCGA-D7-A4YY-01 13 99554673 99554673 C T DOCK9 Missense_Mutation p.V417I 0.34 tolerated(0.05) probably_damaging(0.997) TCGA-D7-A4YY-01 14 102551151 102551151 T G HSP90AA1 Missense_Mutation p.K405T 0.43 tolerated_low_confidence(0.28) unknown(0) TCGA-D7-A4YY-01 14 104518407 104518407 G A TDRD9 Silent p.V1379V 0.33 TCGA-D7-A4YY-01 14 104639558 104639558 C A KIF26A Missense_Mutation p.D555E 0.31 deleterious(0) possibly_damaging(0.707) TCGA-D7-A4YY-01 14 105346656 105346656 C T CEP170B Silent p.S122S 0.31 TCGA-D7-A4YY-01 14 105517684 105517684 C T GPR132 Missense_Mutation p.V264I 0.06 tolerated(1) benign(0.024) TCGA-D7-A4YY-01 14 22251221 22251221 G A TRAV7 Missense_Mutation p.M4I 0.42 tolerated(1) benign(0.004) TCGA-D7-A4YY-01 14 22592222 22592222 T C TRAV26-1 Missense_Mutation p.Y103H 0.38 deleterious(0) possibly_damaging(0.901) TCGA-D7-A4YY-01 14 23794614 23794614 A T PABPN1 3'UTR 0.44 TCGA-D7-A4YY-01 14 24040545 24040545 G T JPH4 Silent p.A465A 0.45 TCGA-D7-A4YY-01 14 24572425 24572425 G A PCK2 Missense_Mutation p.A477T 0.37 tolerated(0.8) benign(0.336) TCGA-D7-A4YY-01 14 24646359 24646359 G A REC8 Missense_Mutation p.E212K 0.35 deleterious(0) benign(0.033) TCGA-D7-A4YY-01 14 24649408 24649410 CTT - REC8 3'UTR 0.23 TCGA-D7-A4YY-01 14 52174877 52174877 G A FRMD6 Missense_Mutation p.E214K 0.44 deleterious(0.02) probably_damaging(0.986) TCGA-D7-A4YY-01 14 56146293 56146295 AGA - KTN1 In_Frame_Del p.K1321del 0.29 TCGA-D7-A4YY-01 14 56757067 56757067 G - PELI2 Frame_Shift_Del p.G198Afs*73 0.22 TCGA-D7-A4YY-01 14 60337173 60337173 G A RTN1 Missense_Mutation p.A59V 0.32 deleterious_low_confidence(0.01) benign(0.043) TCGA-D7-A4YY-01 14 63511946 63511946 G - KCNH5 5'UTR 0.14 TCGA-D7-A4YY-01 14 65009232 65009232 G T HSPA2 Silent p.T555T 0.21 TCGA-D7-A4YY-01 14 73686006 73686006 C T PSEN1 3'UTR 0.33 TCGA-D7-A4YY-01 14 74706508 74706508 G - VSX2 Frame_Shift_Del p.L84Sfs*57 0.47 TCGA-D7-A4YY-01 14 78325429 78325429 G A ADCK1 Missense_Mutation p.R77H 0.36 tolerated(0.06) probably_damaging(0.99) TCGA-D7-A4YY-01 14 92913724 92913724 C G SLC24A4 Silent p.G231G 0.29 TCGA-D7-A4YY-01 14 94770749 94770749 G A SERPINA6 3'UTR 0.22 TCGA-D7-A4YY-01 15 102346035 102346035 G A OR4F6 Missense_Mutation p.S38N 0.34 tolerated_low_confidence(0.08) benign(0.049) TCGA-D7-A4YY-01 15 29406136 29406136 C T APBA2 Missense_Mutation p.R699C 0.39 deleterious(0) probably_damaging(1) TCGA-D7-A4YY-01 15 35529998 35529998 T C ANP32AP1 RNA 0.40 TCGA-D7-A4YY-01 15 40259735 40259735 G A EIF2AK4 Missense_Mutation p.R403H 0.39 deleterious(0.02) probably_damaging(0.996) TCGA-D7-A4YY-01 15 41961969 41961969 C A MGA Missense_Mutation p.R293S 0.28 tolerated(0.06) benign(0.079) TCGA-D7-A4YY-01 15 43815307 43815307 C T MAP1A Silent p.L546L 0.35 TCGA-D7-A4YY-01 15 54307469 54307469 A C UNC13C Missense_Mutation p.K790T 0.51 tolerated_low_confidence(0.06) possibly_damaging(0.791) TCGA-D7-A4YY-01 15 54529879 54529879 T C UNC13C Silent p.N1073N 0.15 TCGA-D7-A4YY-01 15 61521385 61521385 G A RORA Silent p.A11A 0.27 TCGA-D7-A4YY-01 15 70960355 70960356 - T UACA Frame_Shift_Ins p.F890Ifs*2 0.27 TCGA-D7-A4YY-01 15 76484307 76484307 A C C15orf27 Splice_Site p.X257_splice 0.25 TCGA-D7-A4YY-01 15 77407583 77407583 T A PEAK1 Missense_Mutation p.N1386Y 0.35 deleterious(0) probably_damaging(0.999) TCGA-D7-A4YY-01 15 77407588 77407588 T A PEAK1 Missense_Mutation p.H1384L 0.36 deleterious(0) possibly_damaging(0.649) TCGA-D7-A4YY-01 15 78834913 78834913 T C PSMA4 Silent p.L45L 0.41 TCGA-D7-A4YY-01 15 79750766 79750766 C T KIAA1024 Silent p.D759D 0.29 TCGA-D7-A4YY-01 15 83349359 83349359 C T AP3B2 Missense_Mutation p.R307H 0.36 deleterious(0) possibly_damaging(0.608) TCGA-D7-A4YY-01 15 99467876 99467876 G A IGF1R Silent p.S915S 0.37 TCGA-D7-A4YY-01 15 99670282 99670283 - GA SYNM Frame_Shift_Ins p.V576Rfs*6 0.28 TCGA-D7-A4YY-01 16 1248668 1248668 G A CACNA1H Missense_Mutation p.V233I 0.07 tolerated(0.15) possibly_damaging(0.534) TCGA-D7-A4YY-01 16 1252244 1252244 C T CACNA1H Silent p.A598A 0.36 TCGA-D7-A4YY-01 16 14530594 14530594 C T PARN Missense_Mutation p.E634K 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.496) TCGA-D7-A4YY-01 16 16357002 16357002 C T NOMO3 Silent p.T489T 0.35 TCGA-D7-A4YY-01 16 1814167 1814167 C T MAPK8IP3 Missense_Mutation p.P692S 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-D7-A4YY-01 16 20996456 20996456 G A DNAH3 Silent p.T2536T 0.24 TCGA-D7-A4YY-01 16 2156158 2156158 T C PKD1 Missense_Mutation p.H2546R 0.35 benign(0.006) TCGA-D7-A4YY-01 16 29857217 29857217 C T MVP Silent p.R685R 0.46 TCGA-D7-A4YY-01 16 3063917 3063918 - C CLDN9 Frame_Shift_Ins p.P188Afs*96 0.25 TCGA-D7-A4YY-01 16 4492271 4492271 C T DNAJA3 Silent p.Y211Y 0.36 TCGA-D7-A4YY-01 16 57057705 57057705 C T NLRC5 Missense_Mutation p.R122C 0.50 deleterious(0) probably_damaging(0.944) TCGA-D7-A4YY-01 16 67208556 67208556 C A NOL3 Silent p.A106A 0.38 TCGA-D7-A4YY-01 16 676060 676060 G A RAB40C Silent p.T168T 0.33 TCGA-D7-A4YY-01 16 72153332 72153332 G A PMFBP1 Intron 0.11 TCGA-D7-A4YY-01 16 76483708 76483708 G T CNTNAP4 Intron 0.58 TCGA-D7-A4YY-01 16 8722866 8722866 G T METTL22 Missense_Mutation p.G138V 0.11 tolerated(0.16) benign(0.04) TCGA-D7-A4YY-01 16 88951490 88951490 C T CBFA2T3 Missense_Mutation p.D361N 0.35 tolerated(0.08) benign(0.25) TCGA-D7-A4YY-01 17 10317533 10317533 G A MYH8 Silent p.D328D 0.34 TCGA-D7-A4YY-01 17 11872784 11872784 G A DNAH9 Silent p.K4467K 0.30 TCGA-D7-A4YY-01 17 1657783 1657784 - C SERPINF2 Frame_Shift_Ins p.M480Hfs*179 0.22 TCGA-D7-A4YY-01 17 18220238 18220238 G A SMCR8 Missense_Mutation p.D379N 0.38 deleterious(0.03) benign(0.004) TCGA-D7-A4YY-01 17 19318461 19318461 G A RNF112 Missense_Mutation p.A413T 0.50 tolerated_low_confidence(0.21) benign(0.005) TCGA-D7-A4YY-01 17 2227356 2227356 A - SRR 3'UTR 0.40 TCGA-D7-A4YY-01 17 30376229 30376229 C A LRRC37B Nonsense_Mutation p.S831* 0.61 TCGA-D7-A4YY-01 17 31039133 31039133 C T MYO1D Missense_Mutation p.R665Q 0.32 tolerated(0.9) benign(0.001) TCGA-D7-A4YY-01 17 33586177 33586177 G T SLFN5 Missense_Mutation p.Q156H 0.36 tolerated(0.15) benign(0.016) TCGA-D7-A4YY-01 17 35300395 35300395 C - LHX1 Frame_Shift_Del p.E399Kfs*2 0.21 TCGA-D7-A4YY-01 17 37817248 37817248 T C STARD3 Missense_Mutation p.V350A 0.29 tolerated(0.08) benign(0.159) TCGA-D7-A4YY-01 17 39978604 39978604 G A FKBP10 Missense_Mutation p.D565N 0.42 tolerated(0.07) benign(0.169) TCGA-D7-A4YY-01 17 40087077 40087077 A G TTC25 RNA 0.36 TCGA-D7-A4YY-01 17 40441453 40441453 G T STAT5A Missense_Mutation p.Q8H 0.12 deleterious(0) probably_damaging(0.996) TCGA-D7-A4YY-01 17 40693036 40693036 C T NAGLU Missense_Mutation p.S278F 0.34 deleterious(0.01) possibly_damaging(0.707) TCGA-D7-A4YY-01 17 41003845 41003846 - C AOC3 Frame_Shift_Ins p.L164Pfs*92 0.26 TCGA-D7-A4YY-01 17 42430079 42430079 C T GRN Silent p.C565C 0.35 TCGA-D7-A4YY-01 17 43226476 43226478 TTC - HEXIM1 5'UTR 0.42 TCGA-D7-A4YY-01 17 43333097 43333097 G A SPATA32 Missense_Mutation p.A151V 0.39 tolerated(1) benign(0.016) TCGA-D7-A4YY-01 17 43922586 43922586 C T SPPL2C Missense_Mutation p.T105M 0.31 deleterious(0.01) possibly_damaging(0.883) TCGA-D7-A4YY-01 17 46629614 46629614 T G HOXB3 Silent p.R75R 0.09 TCGA-D7-A4YY-01 17 4805130 4805130 G A C17orf107 3'UTR 0.41 TCGA-D7-A4YY-01 17 48628247 48628247 T A SPATA20 Missense_Mutation p.L451H 0.31 deleterious(0) possibly_damaging(0.818) TCGA-D7-A4YY-01 17 52991190 52991191 CA - TOM1L1 Frame_Shift_Del p.Q152Vfs*9 0.27 TCGA-D7-A4YY-01 17 56166684 56166684 G A DYNLL2 3'UTR 0.57 TCGA-D7-A4YY-01 17 57344479 57344479 C A GDPD1 Silent p.P218P 0.32 TCGA-D7-A4YY-01 17 72916026 72916026 C T USH1G Missense_Mutation p.G302D 0.31 tolerated(0.05) probably_damaging(0.999) TCGA-D7-A4YY-01 17 7365532 7365532 C T ZBTB4 Silent p.P923P 0.26 TCGA-D7-A4YY-01 17 80430462 80430462 G A NARF Silent p.T136T 0.24 TCGA-D7-A4YY-01 17 96929 96929 G A RPH3AL Missense_Mutation p.R196C 0.08 deleterious(0) probably_damaging(0.912) TCGA-D7-A4YY-01 18 14478737 14478737 T G CXADRP3 RNA 0.23 TCGA-D7-A4YY-01 18 18586553 18586553 T A ROCK1 Missense_Mutation p.E548D 0.26 tolerated(0.54) benign(0.005) TCGA-D7-A4YY-01 18 47432990 47432990 T C MYO5B Missense_Mutation p.K738R 0.19 deleterious(0.03) benign(0.297) TCGA-D7-A4YY-01 18 5416287 5416287 T C EPB41L3 Missense_Mutation p.K533E 0.27 tolerated(0.1) benign(0.242) TCGA-D7-A4YY-01 18 6955508 6955508 G A LAMA1 Intron 0.22 TCGA-D7-A4YY-01 18 7040146 7040146 A C LAMA1 Missense_Mutation p.C451G 0.16 deleterious(0) probably_damaging(0.999) TCGA-D7-A4YY-01 18 74083441 74083441 G T ZNF516 Silent p.A1115A 0.08 TCGA-D7-A4YY-01 18 77894218 77894218 C T ADNP2 Missense_Mutation p.P308S 0.29 tolerated(0.05) benign(0.032) TCGA-D7-A4YY-01 18 8609828 8609828 C - RAB12 Frame_Shift_Del p.R37Gfs*22 0.20 TCGA-D7-A4YY-01 19 10446426 10446426 G A ICAM3 Silent p.C190C 0.27 TCGA-D7-A4YY-01 19 11356341 11356341 C - DOCK6 Frame_Shift_Del p.L308Cfs*22 0.35 TCGA-D7-A4YY-01 19 11594503 11594503 G A ZNF653 Silent p.P614P 0.27 TCGA-D7-A4YY-01 19 11759225 11759225 C T ZNF833P RNA 0.41 TCGA-D7-A4YY-01 19 12155555 12155555 G A ZNF878 Missense_Mutation p.H221Y 0.36 deleterious(0) probably_damaging(0.999) TCGA-D7-A4YY-01 19 12766648 12766648 G T MAN2B1 Missense_Mutation p.L564M 0.35 deleterious(0) probably_damaging(0.999) TCGA-D7-A4YY-01 19 12858229 12858229 C T ASNA1 Silent p.C246C 0.23 TCGA-D7-A4YY-01 19 12936719 12936719 C T RTBDN Missense_Mutation p.R196H 0.48 tolerated(0.1) benign(0.168) TCGA-D7-A4YY-01 19 13051426 13051426 C T CALR Silent p.D258D 0.35 TCGA-D7-A4YY-01 19 13941297 13941297 C G ZSWIM4 Silent p.G801G 0.27 TCGA-D7-A4YY-01 19 15364459 15364459 C T BRD4 Intron 0.47 TCGA-D7-A4YY-01 19 15483797 15483797 C A AKAP8 Silent p.R242R 0.35 TCGA-D7-A4YY-01 19 15760823 15760824 - C CYP4F3 Frame_Shift_Ins p.D252* 0.23 TCGA-D7-A4YY-01 19 18085055 18085055 G A KCNN1 Missense_Mutation p.V120I 0.39 tolerated(0.08) benign(0.053) TCGA-D7-A4YY-01 19 20728628 20728628 T G ZNF737 Missense_Mutation p.K127N 0.39 deleterious(0.02) possibly_damaging(0.756) TCGA-D7-A4YY-01 19 22256357 22256357 A G ZNF257 Missense_Mutation p.K73E 0.36 tolerated(0.33) benign(0.001) TCGA-D7-A4YY-01 19 22363534 22363534 T C ZNF676 Missense_Mutation p.R329G 0.13 tolerated(0.13) benign(0.104) TCGA-D7-A4YY-01 19 22785186 22785186 C T AC011467.1 5'Flank 0.24 TCGA-D7-A4YY-01 19 22952753 22952753 A C ZNF99 Intron 0.28 TCGA-D7-A4YY-01 19 23329342 23329342 A C ZNF730 Missense_Mutation p.K499T 0.30 deleterious(0.01) benign(0.03) TCGA-D7-A4YY-01 19 23926764 23926764 C T ZNF681 Missense_Mutation p.G530R 0.34 tolerated(0.08) benign(0.001) TCGA-D7-A4YY-01 19 2476174 2476174 A G GADD45B 5'UTR 0.27 TCGA-D7-A4YY-01 19 2477069 2477069 G C GADD45B Missense_Mutation p.E63D 0.30 tolerated(0.1) possibly_damaging(0.817) TCGA-D7-A4YY-01 19 3009543 3009543 G A TLE2 Silent p.P390P 0.39 TCGA-D7-A4YY-01 19 3053823 3053823 C T AES Silent p.S263S 0.42 TCGA-D7-A4YY-01 19 39668365 39668366 - C PAK4 Frame_Shift_Ins p.Y515Lfs*124 0.38 TCGA-D7-A4YY-01 19 41765646 41765647 - C AXL Frame_Shift_Ins p.T844Nfs*6 0.30 TCGA-D7-A4YY-01 19 41822657 41822657 G T CCDC97 Missense_Mutation p.V139L 0.59 tolerated(0.26) probably_damaging(0.914) TCGA-D7-A4YY-01 19 42462919 42462919 A G RABAC1 Missense_Mutation p.F80L 0.49 tolerated(0.09) possibly_damaging(0.745) TCGA-D7-A4YY-01 19 46526308 46526308 C T PGLYRP1 5'UTR 0.85 TCGA-D7-A4YY-01 19 48638989 48638989 C T LIG1 Missense_Mutation p.A491T 0.36 tolerated(0.21) benign(0.002) TCGA-D7-A4YY-01 19 49686010 49686010 C T TRPM4 Missense_Mutation p.A480V 0.35 tolerated(0.25) benign(0.004) TCGA-D7-A4YY-01 19 50138860 50138860 G A RRAS Silent p.G210G 0.37 TCGA-D7-A4YY-01 19 51537807 51537807 A G KLK12 Intron 0.28 TCGA-D7-A4YY-01 19 52250073 52250074 - TG FPR1 Frame_Shift_Ins p.V59Qfs*8 0.28 TCGA-D7-A4YY-01 19 52328103 52328103 C T FPR3 3'UTR 0.31 TCGA-D7-A4YY-01 19 54206031 54206031 T C MIR518B RNA 0.35 TCGA-D7-A4YY-01 19 54849824 54849824 T C LILRA4 Silent p.S66S 0.37 TCGA-D7-A4YY-01 19 55086848 55086848 C T LILRA2 Missense_Mutation p.R261C 0.36 tolerated(0.08) benign(0.051) TCGA-D7-A4YY-01 19 55451015 55451015 G A NLRP7 Missense_Mutation p.T391M 0.35 deleterious(0) probably_damaging(0.997) TCGA-D7-A4YY-01 19 55451098 55451098 G - NLRP7 Frame_Shift_Del p.A364Rfs*10 0.24 TCGA-D7-A4YY-01 19 55512184 55512184 A - NLRP2 Frame_Shift_Del p.N1038Tfs*4 0.34 TCGA-D7-A4YY-01 19 56133410 56133410 C T ZNF784 Missense_Mutation p.G227S 0.27 tolerated(0.3) benign(0.151) TCGA-D7-A4YY-01 19 5667167 5667168 - C SAFB Frame_Shift_Ins p.R818Qfs*5 0.24 TCGA-D7-A4YY-01 19 56981329 56981329 T G ZNF667 Intron 0.36 TCGA-D7-A4YY-01 19 57326838 57326838 T C PEG3 Missense_Mutation p.H991R 0.20 tolerated(0.09) probably_damaging(0.992) TCGA-D7-A4YY-01 19 5789651 5789651 G A DUS3L Missense_Mutation p.A156V 0.17 tolerated(0.05) benign(0.043) TCGA-D7-A4YY-01 19 58361288 58361288 T G ZNF587 5'UTR 0.10 TCGA-D7-A4YY-01 19 58370281 58370281 G T ZNF587 Missense_Mutation p.Q167H 0.14 deleterious(0.01) benign(0.216) TCGA-D7-A4YY-01 19 59028678 59028678 A G ZBTB45 Silent p.I121I 0.19 TCGA-D7-A4YY-01 19 59081816 59081817 CA - MZF1 Frame_Shift_Del p.E159Afs*13 0.16 TCGA-D7-A4YY-01 19 6495121 6495121 G A TUBB4A 3'UTR 0.44 TCGA-D7-A4YY-01 19 7691040 7691040 G T XAB2 Silent p.A213A 0.38 TCGA-D7-A4YY-01 19 812972 812972 C T LPPR3 Silent p.A613A 0.29 TCGA-D7-A4YY-01 19 8953952 8953952 A C MBD3L1 3'UTR 0.31 TCGA-D7-A4YY-01 19 9085983 9085983 T C MUC16 Silent p.E1944E 0.39 TCGA-D7-A4YY-01 1 10177642 10177642 A - UBE4B Frame_Shift_Del p.A444Hfs*14 0.30 TCGA-D7-A4YY-01 1 103388939 103388939 G A COL11A1 Missense_Mutation p.P1203S 0.26 unknown(0) TCGA-D7-A4YY-01 1 10715849 10715849 C A CASZ1 Missense_Mutation p.V508L 0.33 deleterious(0.03) probably_damaging(0.991) TCGA-D7-A4YY-01 1 10720568 10720568 G A CASZ1 Silent p.Y177Y 0.49 TCGA-D7-A4YY-01 1 108700182 108700183 - T SLC25A24 Frame_Shift_Ins p.S191Ifs*74 0.31 TCGA-D7-A4YY-01 1 11008361 11008361 C T C1orf127 Missense_Mutation p.G611R 0.05 tolerated(0.91) benign(0.006) TCGA-D7-A4YY-01 1 110766127 110766127 C T KCNC4 Missense_Mutation p.A407V 0.33 tolerated(0.06) benign(0.146) TCGA-D7-A4YY-01 1 11141285 11141285 C T EXOSC10 Missense_Mutation p.E431K 0.31 tolerated(0.14) benign(0.156) TCGA-D7-A4YY-01 1 111957202 111957202 G A OVGP1 Missense_Mutation p.R641C 0.25 deleterious_low_confidence(0.02) benign(0.197) TCGA-D7-A4YY-01 1 112329567 112329567 T - KCND3 Frame_Shift_Del p.K423Rfs*34 0.29 TCGA-D7-A4YY-01 1 114512809 114512809 C A HIPK1 Silent p.T1001T 0.30 TCGA-D7-A4YY-01 1 145075832 145075832 G A PDE4DIP Missense_Mutation p.R11C 0.08 tolerated_low_confidence(0.09) possibly_damaging(0.835) TCGA-D7-A4YY-01 1 147122094 147122094 G A ACP6 Intron 0.30 TCGA-D7-A4YY-01 1 153330873 153330873 A G S100A9 Silent p.K38K 0.42 TCGA-D7-A4YY-01 1 154543684 154543684 G A CHRNB2 Missense_Mutation p.V129M 0.34 deleterious(0) probably_damaging(0.993) TCGA-D7-A4YY-01 1 154897604 154897604 A G PMVK 3'UTR 0.09 TCGA-D7-A4YY-01 1 155265023 155265023 G A PKLR Missense_Mutation p.T193M 0.31 deleterious(0.01) benign(0.01) TCGA-D7-A4YY-01 1 155289741 155289742 - TCCCTGAGT FDPS Intron 0.18 TCGA-D7-A4YY-01 1 155290689 155290689 T C RUSC1 5'Flank 0.34 TCGA-D7-A4YY-01 1 15545911 15545912 - A TMEM51 Frame_Shift_Ins p.R146Kfs*17 0.16 TCGA-D7-A4YY-01 1 155886421 155886422 - CT KIAA0907 Frame_Shift_Ins p.D517Gfs*5 0.33 TCGA-D7-A4YY-01 1 156437907 156437907 A G MEF2D Missense_Mutation p.Y478H 0.27 tolerated(0.18) benign(0.014) TCGA-D7-A4YY-01 1 157648335 157648335 C T FCRL3 3'UTR 0.44 TCGA-D7-A4YY-01 1 157771340 157771340 A C FCRL1 Missense_Mutation p.L305R 0.42 deleterious(0) probably_damaging(0.957) TCGA-D7-A4YY-01 1 158549530 158549530 T C OR10X1 Missense_Mutation p.T54A 0.31 deleterious(0.01) benign(0.059) TCGA-D7-A4YY-01 1 158607915 158607915 T G SPTA1 Missense_Mutation p.Q1699H 0.40 deleterious(0.02) probably_damaging(0.933) TCGA-D7-A4YY-01 1 158735638 158735638 A C OR6N1 Missense_Mutation p.S279A 0.39 tolerated(0.73) benign(0.371) TCGA-D7-A4YY-01 1 160011129 160011129 G A KCNJ10 3'UTR 0.26 TCGA-D7-A4YY-01 1 161254130 161254130 A - PCP4L1 Frame_Shift_Del p.A24Lfs*17 0.25 TCGA-D7-A4YY-01 1 161833061 161833061 C T ATF6 Missense_Mutation p.R560C 0.38 deleterious(0.01) possibly_damaging(0.556) TCGA-D7-A4YY-01 1 16199321 16199321 G A SPEN Missense_Mutation p.V32M 0.34 probably_damaging(0.999) TCGA-D7-A4YY-01 1 16254696 16254696 G A SPEN Missense_Mutation p.G654E 0.38 probably_damaging(1) TCGA-D7-A4YY-01 1 170633330 170633330 G - PRRX1 5'UTR 0.15 TCGA-D7-A4YY-01 1 171178190 171178190 A T FMO2 3'UTR 0.43 TCGA-D7-A4YY-01 1 172222791 172222791 C T DNM3 Missense_Mutation p.H580Y 0.23 tolerated(0.12) benign(0.031) TCGA-D7-A4YY-01 1 172558656 172558658 TAT - SUCO In_Frame_Del p.I807del 0.34 TCGA-D7-A4YY-01 1 172628524 172628524 A G FASLG Silent p.P61P 0.47 TCGA-D7-A4YY-01 1 173822937 173822937 G A DARS2 Missense_Mutation p.R523H 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-D7-A4YY-01 1 185703895 185703895 G - HMCN1 5'UTR 0.28 TCGA-D7-A4YY-01 1 186114998 186114998 C A HMCN1 Missense_Mutation p.R4851S 0.10 probably_damaging(0.988) TCGA-D7-A4YY-01 1 190067922 190067922 T G BRINP3 Missense_Mutation p.E509D 0.40 tolerated(0.09) probably_damaging(0.978) TCGA-D7-A4YY-01 1 196748981 196748981 A G CFHR3 Missense_Mutation p.K103R 0.46 tolerated(0.79) benign(0.26) TCGA-D7-A4YY-01 1 200143338 200143338 A C NR5A2 Nonstop_Mutation p.*542Yext*43 0.28 TCGA-D7-A4YY-01 1 201196203 201196203 G A IGFN1 Silent p.V3660V 0.39 TCGA-D7-A4YY-01 1 20141050 20141050 A T RNF186 Missense_Mutation p.L182H 0.33 deleterious(0) probably_damaging(0.951) TCGA-D7-A4YY-01 1 201980293 201980293 T - ELF3 Frame_Shift_Del p.F11Lfs*32 0.29 TCGA-D7-A4YY-01 1 207679281 207679281 G T CR1 Missense_Mutation p.A52S 0.38 tolerated(0.07) probably_damaging(0.918) TCGA-D7-A4YY-01 1 21900205 21900205 G A ALPL Missense_Mutation p.V304M 0.31 deleterious(0.02) benign(0.028) TCGA-D7-A4YY-01 1 22447972 22447972 G A WNT4 Silent p.G137G 0.39 TCGA-D7-A4YY-01 1 22920095 22920095 C T EPHA8 Missense_Mutation p.R507C 0.23 tolerated(0.15) possibly_damaging(0.863) TCGA-D7-A4YY-01 1 229738209 229738209 G A TAF5L Silent p.N235N 0.07 TCGA-D7-A4YY-01 1 235292003 235292003 C T TOMM20 Missense_Mutation p.A10T 0.33 deleterious(0.03) probably_damaging(0.957) TCGA-D7-A4YY-01 1 236849887 236849887 G A ACTN2 5'UTR 0.52 TCGA-D7-A4YY-01 1 236966834 236966834 C T MTR Silent p.N47N 0.38 TCGA-D7-A4YY-01 1 237947304 237947304 G A RYR2 Missense_Mutation p.V4098I 0.44 benign(0.115) TCGA-D7-A4YY-01 1 245017759 245017759 T C HNRNPU Missense_Mutation p.Y824C 0.52 deleterious_low_confidence(0) unknown(0) TCGA-D7-A4YY-01 1 24766677 24766677 G A NIPAL3 Missense_Mutation p.A37T 0.32 tolerated(0.6) benign(0.07) TCGA-D7-A4YY-01 1 248004739 248004739 T C OR11L1 Missense_Mutation p.S154G 0.40 tolerated(0.44) benign(0) TCGA-D7-A4YY-01 1 248309059 248309059 A G OR2M5 Missense_Mutation p.I204V 0.04 tolerated(1) benign(0.009) TCGA-D7-A4YY-01 1 248366510 248366510 C G OR2M3 Silent p.L47L 0.33 TCGA-D7-A4YY-01 1 249107334 249107334 G T SH3BP5L Silent p.R189R 0.40 TCGA-D7-A4YY-01 1 27432576 27432576 C G SLC9A1 Missense_Mutation p.V429L 0.23 deleterious(0) probably_damaging(0.968) TCGA-D7-A4YY-01 1 27648737 27648737 C - TMEM222 Frame_Shift_Del p.P18Rfs*17 0.27 TCGA-D7-A4YY-01 1 27680310 27680310 A G SYTL1 Silent p.L552L 0.30 TCGA-D7-A4YY-01 1 32157042 32157043 - G COL16A1 Frame_Shift_Ins p.G459Wfs*47 0.24 TCGA-D7-A4YY-01 1 35846960 35846960 A - ZMYM4 Frame_Shift_Del p.K430Nfs*6 0.30 TCGA-D7-A4YY-01 1 43055135 43055135 A - CCDC30 Frame_Shift_Del p.R457Efs*35 0.27 TCGA-D7-A4YY-01 1 44086837 44086837 C T PTPRF Silent p.G1863G 0.20 TCGA-D7-A4YY-01 1 44685093 44685093 G A DMAP1 Missense_Mutation p.A308T 0.40 tolerated(0.28) benign(0.085) TCGA-D7-A4YY-01 1 52838759 52838759 G A ORC1 3'UTR 0.39 TCGA-D7-A4YY-01 1 55563749 55563749 C T USP24 Missense_Mutation p.R1821H 0.31 deleterious(0) possibly_damaging(0.879) TCGA-D7-A4YY-01 1 59042211 59042211 C T TACSTD2 Silent p.R206R 0.36 TCGA-D7-A4YY-01 1 62913077 62913077 C T USP1 Missense_Mutation p.R439C 0.34 deleterious(0.02) possibly_damaging(0.636) TCGA-D7-A4YY-01 1 6409812 6409812 G A ACOT7 Silent p.N96N 0.39 TCGA-D7-A4YY-01 1 70225942 70225942 G T LRRC7 Missense_Mutation p.G19C 0.23 deleterious(0) probably_damaging(1) TCGA-D7-A4YY-01 1 70446067 70446067 A C LRRC7 Missense_Mutation p.E201D 0.37 tolerated(0.15) benign(0.057) TCGA-D7-A4YY-01 1 75037321 75037321 T C C1orf173 Missense_Mutation p.E1358G 0.37 deleterious(0) probably_damaging(0.913) TCGA-D7-A4YY-01 1 76779497 76779497 C A ST6GALNAC3 Missense_Mutation p.S9Y 0.35 benign(0.069) TCGA-D7-A4YY-01 1 8384692 8384692 C T SLC45A1 Silent p.Y101Y 0.41 TCGA-D7-A4YY-01 1 8415098 8415099 - C RERE 3'UTR 0.24 TCGA-D7-A4YY-01 1 85130166 85130166 G A SSX2IP Missense_Mutation p.R203C 0.36 deleterious(0) probably_damaging(0.998) TCGA-D7-A4YY-01 1 85135370 85135370 T - SSX2IP Frame_Shift_Del p.K140Nfs*13 0.10 TCGA-D7-A4YY-01 20 18296519 18296519 G A ZNF133 Missense_Mutation p.V341M 0.41 deleterious(0) possibly_damaging(0.622) TCGA-D7-A4YY-01 20 2097952 2097952 T C STK35 Silent p.A511A 0.38 TCGA-D7-A4YY-01 20 21492887 21492887 G A NKX2-2 Missense_Mutation p.R166C 0.07 deleterious(0) probably_damaging(0.998) TCGA-D7-A4YY-01 20 2297997 2297997 G A TGM3 Silent p.A283A 0.43 TCGA-D7-A4YY-01 20 23016142 23016142 C - SSTR4 Frame_Shift_Del p.G11Afs*61 0.18 TCGA-D7-A4YY-01 20 31044128 31044128 C T C20orf112 Silent p.T60T 0.38 TCGA-D7-A4YY-01 20 31996264 31996264 A G SNTA1 3'UTR 0.37 TCGA-D7-A4YY-01 20 37198625 37198625 G A RALGAPB Missense_Mutation p.R1350H 0.29 tolerated(0.06) possibly_damaging(0.822) TCGA-D7-A4YY-01 20 3766349 3766349 T C CENPB Missense_Mutation p.Y261C 0.40 deleterious(0.02) unknown(0) TCGA-D7-A4YY-01 20 4228498 4228498 C T ADRA1D Silent p.P369P 0.37 TCGA-D7-A4YY-01 20 44512182 44512182 A G ZSWIM1 Silent p.K317K 0.29 TCGA-D7-A4YY-01 20 44806663 44806663 T C CDH22 Missense_Mutation p.T613A 0.30 tolerated(1) benign(0.192) TCGA-D7-A4YY-01 20 49508906 49508906 G A ADNP Missense_Mutation p.T782I 0.33 deleterious(0.04) possibly_damaging(0.503) TCGA-D7-A4YY-01 20 50133423 50133423 C T NFATC2 Missense_Mutation p.R411Q 0.43 tolerated(0.45) benign(0.13) TCGA-D7-A4YY-01 20 5903413 5903414 - A CHGB Frame_Shift_Ins p.E211Rfs*21 0.09 TCGA-D7-A4YY-01 20 61512787 61512787 G A DIDO1 Silent p.V1507V 0.33 TCGA-D7-A4YY-01 20 62200595 62200595 C T HELZ2 Missense_Mutation p.V332M 0.37 tolerated(0.1) benign(0.015) TCGA-D7-A4YY-01 21 15352180 15352180 C A ANKRD20A11P RNA 0.30 TCGA-D7-A4YY-01 21 31744257 31744257 C T KRTAP13-2 Missense_Mutation p.C92Y 0.30 deleterious(0.05) benign(0.443) TCGA-D7-A4YY-01 21 31964786 31964786 A T KRTAP6-3 Translation_Start_Site p.M1? 0.30 unknown(0) TCGA-D7-A4YY-01 21 35174739 35174740 - G ITSN1 Frame_Shift_Ins p.E772Gfs*5 0.29 TCGA-D7-A4YY-01 21 35260498 35260503 AAGACC - ITSN1 In_Frame_Del p.D1688_Q1689del 0.23 TCGA-D7-A4YY-01 21 38308767 38308768 - C HLCS Frame_Shift_Ins p.E327Rfs*25 0.23 TCGA-D7-A4YY-01 21 41648155 41648155 C A DSCAM Missense_Mutation p.R742L 0.42 deleterious(0) probably_damaging(0.973) TCGA-D7-A4YY-01 21 43711671 43711671 G A ABCG1 Missense_Mutation p.V532M 0.38 tolerated(0.24) benign(0.029) TCGA-D7-A4YY-01 21 45999669 45999669 G A KRTAP10-5 Missense_Mutation p.R263C 0.40 deleterious(0.02) possibly_damaging(0.459) TCGA-D7-A4YY-01 21 46000448 46000448 G A KRTAP10-5 Missense_Mutation p.A3V 0.35 tolerated(0.08) unknown(0) TCGA-D7-A4YY-01 21 47858188 47858188 A G PCNT Missense_Mutation p.R3071G 0.23 possibly_damaging(0.587) TCGA-D7-A4YY-01 22 19124873 19124873 G A DGCR14 Missense_Mutation p.T333M 0.38 deleterious(0) probably_damaging(0.938) TCGA-D7-A4YY-01 22 20130375 20130375 G - ZDHHC8 Frame_Shift_Del p.G409Afs*25 0.25 TCGA-D7-A4YY-01 22 21799578 21799578 G A HIC2 Missense_Mutation p.A132T 0.42 deleterious(0.01) possibly_damaging(0.787) TCGA-D7-A4YY-01 22 24734371 24734371 G A SPECC1L Missense_Mutation p.A860T 0.34 tolerated(0.73) benign(0.015) TCGA-D7-A4YY-01 22 28193118 28193118 C T MN1 Silent p.P1138P 0.38 TCGA-D7-A4YY-01 22 28193441 28193441 C T MN1 Missense_Mutation p.G1031R 0.39 possibly_damaging(0.468) TCGA-D7-A4YY-01 22 29907262 29907262 C T THOC5 Silent p.V607V 0.05 TCGA-D7-A4YY-01 22 30414048 30414048 C - MTMR3 Frame_Shift_Del p.L605* 0.25 TCGA-D7-A4YY-01 22 32629011 32629011 T C SLC5A4 Missense_Mutation p.Q299R 0.21 deleterious(0) probably_damaging(0.999) TCGA-D7-A4YY-01 22 35802675 35802675 C T MCM5 Missense_Mutation p.R185C 0.31 deleterious(0.03) possibly_damaging(0.776) TCGA-D7-A4YY-01 22 35811891 35811891 C T MCM5 Missense_Mutation p.R425W 0.37 deleterious(0) probably_damaging(0.998) TCGA-D7-A4YY-01 22 36013256 36013257 - C MB Frame_Shift_Ins p.K17Efs*5 0.22 TCGA-D7-A4YY-01 22 36236338 36236338 C - RBFOX2 Intron 0.27 TCGA-D7-A4YY-01 22 39267747 39267747 C T CBX6 Silent p.E43E 0.27 TCGA-D7-A4YY-01 22 41609927 41609927 C T L3MBTL2 Missense_Mutation p.T98I 0.30 deleterious(0.05) benign(0.01) TCGA-D7-A4YY-01 2 107460225 107460225 G A ST6GAL2 Missense_Mutation p.P70L 0.37 benign(0) TCGA-D7-A4YY-01 2 109381418 109381419 - T RANBP2 Frame_Shift_Ins p.S1477Ffs*17 0.25 TCGA-D7-A4YY-01 2 109388223 109388223 C T RANBP2 Missense_Mutation p.T2639I 0.32 tolerated(0.21) benign(0.376) TCGA-D7-A4YY-01 2 120439107 120439107 C T TMEM177 Silent p.A226A 0.34 TCGA-D7-A4YY-01 2 125262112 125262112 C T CNTNAP5 Missense_Mutation p.R435C 0.21 tolerated(0.07) possibly_damaging(0.67) TCGA-D7-A4YY-01 2 131522032 131522032 G A AMER3 Missense_Mutation p.R796H 0.43 tolerated(0.47) benign(0) TCGA-D7-A4YY-01 2 131803583 131803583 T C ARHGEF4 Intron 0.31 TCGA-D7-A4YY-01 2 141283810 141283810 G T LRP1B Missense_Mutation p.N2624K 0.39 possibly_damaging(0.728) TCGA-D7-A4YY-01 2 141751623 141751623 C T LRP1B Nonsense_Mutation p.W862* 0.28 TCGA-D7-A4YY-01 2 144764988 144764988 C A GTDC1 Missense_Mutation p.E212D 0.24 tolerated_low_confidence(0.26) benign(0.09) TCGA-D7-A4YY-01 2 1652415 1652415 G A PXDN Missense_Mutation p.T1046M 0.24 tolerated(1) benign(0.002) TCGA-D7-A4YY-01 2 1653207 1653207 T - PXDN Frame_Shift_Del p.N782Tfs*21 0.27 TCGA-D7-A4YY-01 2 169699563 169699563 A - NOSTRIN Frame_Shift_Del p.N191Tfs*9 0.24 TCGA-D7-A4YY-01 2 169985072 169985073 - T LRP2 3'UTR 0.32 TCGA-D7-A4YY-01 2 175613394 175613394 G A CHRNA1 Silent p.L411L 0.28 TCGA-D7-A4YY-01 2 176958221 176958221 G A HOXD13 Silent p.Q201Q 0.38 TCGA-D7-A4YY-01 2 177016313 177016313 A - HOXD3 5'UTR 0.26 TCGA-D7-A4YY-01 2 179587840 179587840 C A TTN Silent p.G7298G 0.18 TCGA-D7-A4YY-01 2 186670735 186670735 A C FSIP2 Silent p.R5657R 0.37 TCGA-D7-A4YY-01 2 191227411 191227411 G T INPP1 Missense_Mutation p.W88L 0.25 tolerated(1) benign(0) TCGA-D7-A4YY-01 2 197172768 197172768 C T HECW2 Missense_Mutation p.V826M 0.12 deleterious(0) probably_damaging(0.998) TCGA-D7-A4YY-01 2 198572027 198572027 G A MARS2 3'UTR 0.50 TCGA-D7-A4YY-01 2 202626159 202626159 G T ALS2 Silent p.A186A 0.31 TCGA-D7-A4YY-01 2 211521259 211521259 A G CPS1 Missense_Mutation p.H1196R 0.38 tolerated(0.14) possibly_damaging(0.488) TCGA-D7-A4YY-01 2 215843156 215843156 T - ABCA12 Frame_Shift_Del p.N1671Ifs*4 0.38 TCGA-D7-A4YY-01 2 217543602 217543602 C T IGFBP5 Missense_Mutation p.A180T 0.40 tolerated(0.71) benign(0.002) TCGA-D7-A4YY-01 2 219247695 219247695 C A SLC11A1 Missense_Mutation p.P7H 0.31 deleterious(0.01) probably_damaging(0.997) TCGA-D7-A4YY-01 2 219892362 219892362 G A CCDC108 Intron 0.07 TCGA-D7-A4YY-01 2 227662442 227662442 C T IRS1 Missense_Mutation p.R338H 0.35 deleterious(0) possibly_damaging(0.456) TCGA-D7-A4YY-01 2 228552892 228552892 A G SLC19A3 Missense_Mutation p.V435A 0.36 deleterious(0.02) benign(0.202) TCGA-D7-A4YY-01 2 228563510 228563510 C T SLC19A3 Silent p.A307A 0.38 TCGA-D7-A4YY-01 2 240002823 240002823 G - HDAC4 Frame_Shift_Del p.M902Wfs*55 0.27 TCGA-D7-A4YY-01 2 241659198 241659198 G A KIF1A Nonsense_Mutation p.R1672* 0.41 TCGA-D7-A4YY-01 2 242793198 242793199 - A PDCD1 3'UTR 0.25 TCGA-D7-A4YY-01 2 24484521 24484521 T - ITSN2 Frame_Shift_Del p.M816Cfs*41 0.27 TCGA-D7-A4YY-01 2 27530301 27530301 G A UCN 3'UTR 0.57 TCGA-D7-A4YY-01 2 27865301 27865301 C T GPN1 Silent p.N296N 0.23 TCGA-D7-A4YY-01 2 31168647 31168648 - C GALNT14 Splice_Site p.X253_splice 0.23 TCGA-D7-A4YY-01 2 36994320 36994320 A G VIT Missense_Mutation p.T191A 0.08 tolerated_low_confidence(0.27) benign(0.209) TCGA-D7-A4YY-01 2 37480415 37480415 C T PRKD3 Missense_Mutation p.A860T 0.31 tolerated(0.13) benign(0.033) TCGA-D7-A4YY-01 2 42280399 42280399 G A PKDCC Silent p.Q220Q 0.27 TCGA-D7-A4YY-01 2 68691329 68691329 T - FBXO48 3'UTR 0.32 TCGA-D7-A4YY-01 2 7005402 7005402 G T CMPK2 Silent p.T142T 0.53 TCGA-D7-A4YY-01 2 73677769 73677769 G A ALMS1 Missense_Mutation p.G1371D 0.37 benign(0.141) TCGA-D7-A4YY-01 2 74701639 74701639 G A CCDC142 3'UTR 0.31 TCGA-D7-A4YY-01 2 79363886 79363886 A C REG1P RNA 0.18 TCGA-D7-A4YY-01 2 86073607 86073607 C T ST3GAL5 Missense_Mutation p.A248T 0.31 tolerated(0.18) possibly_damaging(0.86) TCGA-D7-A4YY-01 2 90060947 90060947 A G IGKV6D-21 Silent p.E98E 0.39 TCGA-D7-A4YY-01 2 90078253 90078253 G A IGKV3D-20 Missense_Mutation p.S97N 0.22 tolerated(0.08) benign(0.165) TCGA-D7-A4YY-01 2 95537373 95537373 G A TEKT4 Missense_Mutation p.V17M 0.27 deleterious(0.02) benign(0.14) TCGA-D7-A4YY-01 2 97165004 97165004 C T NEURL3 RNA 0.42 TCGA-D7-A4YY-01 2 99294914 99294914 G A MGAT4A Nonsense_Mutation p.R39* 0.25 TCGA-D7-A4YY-01 2 99448925 99448925 C - KIAA1211L Frame_Shift_Del p.L143Ffs*11 0.32 TCGA-D7-A4YY-01 2 99936110 99936110 A - TXNDC9 3'UTR 0.39 TCGA-D7-A4YY-01 2 99999375 99999375 A G EIF5B Silent p.A754A 0.40 TCGA-D7-A4YY-01 3 10206600 10206600 C G IRAK2 5'UTR 0.65 TCGA-D7-A4YY-01 3 107517482 107517482 C T BBX Silent p.S822S 0.42 TCGA-D7-A4YY-01 3 111603826 111603826 A G PHLDB2 Missense_Mutation p.Y301C 0.30 deleterious(0.01) benign(0.235) TCGA-D7-A4YY-01 3 119533867 119533867 C G NR1I2 Missense_Mutation p.A318G 0.29 deleterious(0.02) benign(0.087) TCGA-D7-A4YY-01 3 122545714 122545714 C T DIRC2 Missense_Mutation p.L169F 0.41 deleterious(0.01) benign(0.435) TCGA-D7-A4YY-01 3 122869088 122869089 - C PDIA5 Frame_Shift_Ins p.P387Afs*44 0.30 TCGA-D7-A4YY-01 3 125007067 125007067 G A ZNF148 Silent p.S113S 0.30 TCGA-D7-A4YY-01 3 126260936 126260936 G A CHST13 Missense_Mutation p.A181T 0.32 deleterious(0.03) probably_damaging(0.999) TCGA-D7-A4YY-01 3 126676385 126676385 C T CHCHD6 Silent p.A231A 0.75 TCGA-D7-A4YY-01 3 126915945 126915945 C T C3orf56 Silent p.S139S 0.37 TCGA-D7-A4YY-01 3 128984519 128984519 T C COPG1 Missense_Mutation p.L451P 0.43 deleterious(0) possibly_damaging(0.874) TCGA-D7-A4YY-01 3 129324787 129324787 G A PLXND1 Silent p.F232F 0.37 TCGA-D7-A4YY-01 3 12978181 12978181 C T IQSEC1 Missense_Mutation p.R126Q 0.45 tolerated(0.07) probably_damaging(0.998) TCGA-D7-A4YY-01 3 130174365 130174365 T C COL6A5 Silent p.S2215S 0.33 TCGA-D7-A4YY-01 3 133647584 133647584 G T C3orf36 Missense_Mutation p.L22I 0.32 tolerated_low_confidence(0.1) possibly_damaging(0.567) TCGA-D7-A4YY-01 3 134670649 134670649 T A EPHB1 Missense_Mutation p.L187H 0.37 deleterious(0) probably_damaging(0.98) TCGA-D7-A4YY-01 3 13661294 13661294 C T FBLN2 Silent p.P706P 0.26 TCGA-D7-A4YY-01 3 138665453 138665453 C T FOXL2 Missense_Mutation p.G38S 0.42 tolerated(0.13) unknown(0) TCGA-D7-A4YY-01 3 138739336 138739336 C T PRR23B Silent p.A56A 0.37 TCGA-D7-A4YY-01 3 139096964 139096964 G A COPB2 Silent p.H141H 0.36 TCGA-D7-A4YY-01 3 150916403 150916403 G A GPR171 Silent p.C257C 0.35 TCGA-D7-A4YY-01 3 154032978 154032978 T - DHX36 Frame_Shift_Del p.M154Cfs*27 0.45 TCGA-D7-A4YY-01 3 156395504 156395504 C T TIPARP Silent p.T6T 0.35 TCGA-D7-A4YY-01 3 169820467 169820469 TCT - PHC3 In_Frame_Del p.E877del 0.36 TCGA-D7-A4YY-01 3 183824403 183824403 G T HTR3E Missense_Mutation p.M457I 0.08 tolerated(0.18) benign(0.023) TCGA-D7-A4YY-01 3 184953084 184953084 G A EHHADH Silent p.H115H 0.39 TCGA-D7-A4YY-01 3 196547438 196547438 G T PAK2 Missense_Mutation p.R450S 0.36 deleterious(0.02) probably_damaging(0.994) TCGA-D7-A4YY-01 3 36888771 36888771 G A TRANK1 Missense_Mutation p.R1608W 0.69 tolerated(0.19) benign(0.005) TCGA-D7-A4YY-01 3 38035889 38035889 C T VILL Silent p.T91T 0.55 TCGA-D7-A4YY-01 3 47050870 47050870 C T NBEAL2 3'UTR 0.64 TCGA-D7-A4YY-01 3 48616694 48616694 G - COL7A1 Frame_Shift_Del p.P1775Lfs*66 0.35 TCGA-D7-A4YY-01 3 50390758 50390758 C T CYB561D2 Silent p.R84R 0.63 TCGA-D7-A4YY-01 3 51669622 51669622 C T RAD54L2 Missense_Mutation p.R386C 0.63 deleterious(0) probably_damaging(0.995) TCGA-D7-A4YY-01 3 52551026 52551026 G - STAB1 Frame_Shift_Del p.G1465Afs*126 0.32 TCGA-D7-A4YY-01 3 75480030 75480030 G A RP11-803B1.8 5'Flank 0.07 TCGA-D7-A4YY-01 3 85932472 85932472 C T CADM2 Silent p.R83R 0.40 TCGA-D7-A4YY-01 3 88040823 88040823 T - HTR1F Frame_Shift_Del p.F310Lfs*2 0.28 TCGA-D7-A4YY-01 3 9739422 9739423 CT - MTMR14 Frame_Shift_Del p.S550Hfs*34 0.23 TCGA-D7-A4YY-01 3 99514765 99514765 G A COL8A1 Missense_Mutation p.V674M 0.35 deleterious(0.01) probably_damaging(1) TCGA-D7-A4YY-01 4 106640591 106640591 C A GSTCD Silent p.A267A 0.33 TCGA-D7-A4YY-01 4 123140538 123140547 AGGTTATCTC - KIAA1109 Frame_Shift_Del p.I766Lfs*78 0.26 TCGA-D7-A4YY-01 4 126238850 126238850 C T FAT4 Silent p.R428R 0.38 TCGA-D7-A4YY-01 4 126241256 126241256 A C FAT4 Missense_Mutation p.L1230F 0.36 probably_damaging(0.997) TCGA-D7-A4YY-01 4 126373025 126373025 G T FAT4 Missense_Mutation p.E3618D 0.33 benign(0.022) TCGA-D7-A4YY-01 4 134072270 134072270 A G PCDH10 Silent p.Q325Q 0.40 TCGA-D7-A4YY-01 4 141592064 141592064 T - TBC1D9 Frame_Shift_Del p.K359Rfs*20 0.30 TCGA-D7-A4YY-01 4 155157276 155157276 T C DCHS2 Missense_Mutation p.E2388G 0.43 deleterious(0) probably_damaging(1) TCGA-D7-A4YY-01 4 155219587 155219587 T G DCHS2 Missense_Mutation p.K1505T 0.31 tolerated(0.07) possibly_damaging(0.601) TCGA-D7-A4YY-01 4 155491807 155491807 C T FGB 3'UTR 0.30 TCGA-D7-A4YY-01 4 156751149 156751149 C T ASIC5 Silent p.T459T 0.18 TCGA-D7-A4YY-01 4 16164914 16164914 C T TAPT1 3'UTR 0.34 TCGA-D7-A4YY-01 4 162306896 162306896 T - FSTL5 3'UTR 0.30 TCGA-D7-A4YY-01 4 175649803 175649803 C T GLRA3 Missense_Mutation p.R105H 0.43 deleterious(0) probably_damaging(0.999) TCGA-D7-A4YY-01 4 17579176 17579176 G A LAP3 Missense_Mutation p.A30T 0.19 tolerated(0.25) benign(0.004) TCGA-D7-A4YY-01 4 177046415 177046415 T A WDR17 Silent p.S257S 0.34 TCGA-D7-A4YY-01 4 184368545 184368545 C A CDKN2AIP Missense_Mutation p.P570T 0.38 deleterious(0) probably_damaging(0.996) TCGA-D7-A4YY-01 4 185940639 185940639 G A HELT Silent p.A86A 0.34 TCGA-D7-A4YY-01 4 186583287 186583287 C T SORBS2 Missense_Mutation p.S122N 0.42 tolerated(0.37) benign(0.024) TCGA-D7-A4YY-01 4 40946923 40946923 A G APBB2 Missense_Mutation p.S335P 0.35 tolerated(0.14) benign(0.397) TCGA-D7-A4YY-01 4 420862 420862 A G ABCA11P Intron 0.19 TCGA-D7-A4YY-01 4 4283536 4283536 C T LYAR Missense_Mutation p.D71N 0.04 deleterious(0) possibly_damaging(0.468) TCGA-D7-A4YY-01 4 52765513 52765513 T G DCUN1D4 Missense_Mutation p.L195R 0.29 tolerated(0.5) benign(0.326) TCGA-D7-A4YY-01 4 6087300 6087300 G A JAKMIP1 Silent p.G227G 0.05 TCGA-D7-A4YY-01 4 6107371 6107371 C T JAKMIP1 Silent p.L151L 0.46 TCGA-D7-A4YY-01 4 728799 728799 C - PCGF3 Frame_Shift_Del p.L65Cfs*26 0.28 TCGA-D7-A4YY-01 4 7435572 7435572 G T PSAPL1 Silent p.P345P 0.30 TCGA-D7-A4YY-01 4 77317535 77317535 C T CCDC158 Missense_Mutation p.V59M 0.24 tolerated(0.34) possibly_damaging(0.502) TCGA-D7-A4YY-01 5 127681117 127681117 G A FBN2 Missense_Mutation p.T1050M 0.34 deleterious(0.05) possibly_damaging(0.594) TCGA-D7-A4YY-01 5 131409493 131409494 - G CSF2 5'UTR 0.29 TCGA-D7-A4YY-01 5 132070141 132070141 G A KIF3A Silent p.C12C 0.07 TCGA-D7-A4YY-01 5 13719115 13719115 C T DNAH5 Silent p.A4125A 0.35 TCGA-D7-A4YY-01 5 137727492 137727492 G A KDM3B Missense_Mutation p.R724H 0.40 deleterious_low_confidence(0.02) benign(0.003) TCGA-D7-A4YY-01 5 140481106 140481106 T G PCDHB3 Silent p.T291T 0.44 TCGA-D7-A4YY-01 5 140502924 140502924 C T PCDHB4 Silent p.P448P 0.31 TCGA-D7-A4YY-01 5 140563640 140563640 C T PCDHB16 Silent p.S502S 0.35 TCGA-D7-A4YY-01 5 140953602 140953602 A G DIAPH1 Silent p.S605S 0.56 TCGA-D7-A4YY-01 5 145719806 145719806 C T POU4F3 Silent p.S272S 0.35 TCGA-D7-A4YY-01 5 146777407 146777407 G A DPYSL3 Missense_Mutation p.A542V 0.41 tolerated(0.07) benign(0.015) TCGA-D7-A4YY-01 5 151166156 151166156 C T G3BP1 Intron 0.07 TCGA-D7-A4YY-01 5 158601053 158601053 G A RNF145 Silent p.S275S 0.23 TCGA-D7-A4YY-01 5 167617365 167617365 C A TENM2 Missense_Mutation p.P865T 0.55 deleterious(0) probably_damaging(0.999) TCGA-D7-A4YY-01 5 169141082 169141082 T G DOCK2 Silent p.S570S 0.36 TCGA-D7-A4YY-01 5 176831539 176831539 T C F12 Missense_Mutation p.Q254R 0.38 tolerated(0.16) benign(0.271) TCGA-D7-A4YY-01 5 178392714 178392714 G T ZNF454 Nonsense_Mutation p.E437* 0.34 TCGA-D7-A4YY-01 5 178581083 178581083 C T ADAMTS2 Missense_Mutation p.R450H 0.30 deleterious(0.02) probably_damaging(0.967) TCGA-D7-A4YY-01 5 21760759 21760759 T C CDH12 Missense_Mutation p.D514G 0.41 deleterious(0) probably_damaging(1) TCGA-D7-A4YY-01 5 33937581 33937581 C A RXFP3 Missense_Mutation p.L246M 0.36 deleterious(0) probably_damaging(0.989) TCGA-D7-A4YY-01 5 34922810 34922810 C T BRIX1 Silent p.L149L 0.31 TCGA-D7-A4YY-01 5 35857056 35857057 CT - IL7R 5'UTR 0.31 TCGA-D7-A4YY-01 5 43245764 43245764 T - NIM1K 5'UTR 0.26 TCGA-D7-A4YY-01 5 63256881 63256881 C T HTR1A Silent p.A222A 0.38 TCGA-D7-A4YY-01 5 65460649 65460649 C T SREK1 Missense_Mutation p.R309C 0.05 deleterious(0) unknown(0) TCGA-D7-A4YY-01 5 76376288 76376288 C T ZBED3 Intron 0.37 TCGA-D7-A4YY-01 5 80366158 80366158 C T RASGRF2 Intron 0.24 TCGA-D7-A4YY-01 5 80689868 80689868 C T ACOT12 Silent p.A22A 0.11 TCGA-D7-A4YY-01 5 85913866 85913866 C T COX7C 5'UTR 0.28 TCGA-D7-A4YY-01 5 89948236 89948236 C T GPR98 Nonsense_Mutation p.Q1164* 0.28 TCGA-D7-A4YY-01 5 93076713 93076713 T - POU5F2 Frame_Shift_Del p.K186Sfs*3 0.27 TCGA-D7-A4YY-01 5 94956654 94956654 G A GPR150 Silent p.P225P 0.44 TCGA-D7-A4YY-01 6 109787369 109787370 - GTAAGATTA ZBTB24 In_Frame_Ins p.N591_T593dup 0.18 TCGA-D7-A4YY-01 6 10995330 10995330 T - ELOVL2 Frame_Shift_Del p.T139Rfs*23 0.34 TCGA-D7-A4YY-01 6 111336988 111336988 C T RPF2 Silent p.I175I 0.55 TCGA-D7-A4YY-01 6 112024169 112024169 G A FYN Missense_Mutation p.R206C 0.69 deleterious(0) probably_damaging(0.998) TCGA-D7-A4YY-01 6 127797312 127797312 T A SOGA3 Missense_Mutation p.D620V 0.48 deleterious(0.03) possibly_damaging(0.722) TCGA-D7-A4YY-01 6 135318688 135318688 C A HBS1L Missense_Mutation p.A216S 0.29 tolerated(0.56) benign(0.002) TCGA-D7-A4YY-01 6 13622721 13622721 G A RANBP9 Missense_Mutation p.T688I 0.66 deleterious(0.02) benign(0.044) TCGA-D7-A4YY-01 6 13644826 13644826 G C RANBP9 Missense_Mutation p.R355G 0.68 tolerated(0.12) benign(0.248) TCGA-D7-A4YY-01 6 139564084 139564084 G - TXLNB Frame_Shift_Del p.P545Lfs*2 0.26 TCGA-D7-A4YY-01 6 144507972 144507972 G A STX11 Missense_Mutation p.A70T 0.42 tolerated(1) benign(0.004) TCGA-D7-A4YY-01 6 146256569 146256570 - A SHPRH Frame_Shift_Ins p.G860Wfs*9 0.30 TCGA-D7-A4YY-01 6 152679642 152679642 G A SYNE1 Missense_Mutation p.R3492C 0.40 possibly_damaging(0.794) TCGA-D7-A4YY-01 6 158923160 158923160 C - TULP4 Frame_Shift_Del p.Q824Rfs*5 0.30 TCGA-D7-A4YY-01 6 159183138 159183141 TTTG - SYTL3 Frame_Shift_Del p.C483Wfs*2 0.09 TCGA-D7-A4YY-01 6 161071490 161071490 T C LPA Missense_Mutation p.H30R 0.05 tolerated(0.35) probably_damaging(0.993) TCGA-D7-A4YY-01 6 167550897 167550898 - A CCR6 3'UTR 0.29 TCGA-D7-A4YY-01 6 169639759 169639759 C T THBS2 Missense_Mutation p.C355Y 0.26 deleterious(0) probably_damaging(1) TCGA-D7-A4YY-01 6 18122551 18122551 G A NHLRC1 Missense_Mutation p.A96V 0.89 tolerated(0.33) benign(0.001) TCGA-D7-A4YY-01 6 24178723 24178723 T G DCDC2 Missense_Mutation p.Q387H 0.70 tolerated(0.11) benign(0.003) TCGA-D7-A4YY-01 6 24357600 24357601 - G KAAG1 5'UTR 0.47 TCGA-D7-A4YY-01 6 24436860 24436860 G C GPLD1 Missense_Mutation p.L768V 0.64 tolerated(0.55) benign(0.008) TCGA-D7-A4YY-01 6 26409922 26409922 A C BTN3A1 Missense_Mutation p.M293L 0.23 tolerated(0.87) benign(0) TCGA-D7-A4YY-01 6 31608571 31608571 G - BAG6 Frame_Shift_Del p.Q948Sfs*85 0.37 TCGA-D7-A4YY-01 6 32149201 32149201 C T AGER Missense_Mutation p.G349R 0.58 deleterious_low_confidence(0.01) possibly_damaging(0.802) TCGA-D7-A4YY-01 6 32411022 32411024 TCA - HLA-DRA In_Frame_Del p.I131del 0.53 TCGA-D7-A4YY-01 6 33273073 33273073 G - TAPBP Frame_Shift_Del p.T188Pfs*17 0.33 TCGA-D7-A4YY-01 6 33626517 33626517 C T ITPR3 Missense_Mutation p.A147V 0.67 deleterious(0) probably_damaging(0.978) TCGA-D7-A4YY-01 6 39282792 39282792 C A KCNK16 3'UTR 0.46 TCGA-D7-A4YY-01 6 41774065 41774065 C T USP49 Silent p.A219A 0.36 TCGA-D7-A4YY-01 6 42204007 42204007 G A TRERF1 Missense_Mutation p.P1001L 0.16 tolerated(0.12) possibly_damaging(0.726) TCGA-D7-A4YY-01 6 43155045 43155045 C T CUL9 Silent p.P483P 0.39 TCGA-D7-A4YY-01 6 51637556 51637556 A C PKHD1 Silent p.A2862A 0.31 TCGA-D7-A4YY-01 6 52147569 52147569 C G MCM3 Missense_Mutation p.Q139H 0.31 tolerated(0.07) possibly_damaging(0.634) TCGA-D7-A4YY-01 6 52998929 52998929 T C GCM1 Missense_Mutation p.E90G 0.34 tolerated(0.06) benign(0.045) TCGA-D7-A4YY-01 6 73904777 73904777 A C KCNQ5 Missense_Mutation p.E832D 0.52 tolerated_low_confidence(0.24) benign(0.004) TCGA-D7-A4YY-01 7 100283658 100283658 G A GIGYF1 Silent p.F331F 0.35 TCGA-D7-A4YY-01 7 101183279 101183279 A G COL26A1 Missense_Mutation p.I185V 0.22 tolerated(0.34) benign(0.314) TCGA-D7-A4YY-01 7 1049623 1049623 G A C7orf50 Missense_Mutation p.R96C 0.43 tolerated(0.06) benign(0.003) TCGA-D7-A4YY-01 7 113519924 113519924 G A PPP1R3A Missense_Mutation p.T408I 0.07 tolerated(1) benign(0) TCGA-D7-A4YY-01 7 120740134 120740134 C T CPED1 Missense_Mutation p.R302C 0.37 tolerated(0.2) possibly_damaging(0.814) TCGA-D7-A4YY-01 7 121652741 121652741 T G PTPRZ1 Missense_Mutation p.V1214G 0.30 tolerated_low_confidence(0.06) benign(0.004) TCGA-D7-A4YY-01 7 122338523 122338523 G A RNF133 Silent p.V150V 0.34 TCGA-D7-A4YY-01 7 127668602 127668603 - T LRRC4 3'UTR 0.28 TCGA-D7-A4YY-01 7 128447448 128447448 A T CCDC136 Missense_Mutation p.K485M 0.27 deleterious(0) probably_damaging(0.99) TCGA-D7-A4YY-01 7 131912276 131912276 C T PLXNA4 Missense_Mutation p.V606M 0.24 tolerated(0.11) benign(0.02) TCGA-D7-A4YY-01 7 134853534 134853534 G A C7orf49 Intron 0.42 TCGA-D7-A4YY-01 7 138417723 138417723 C T ATP6V0A4 Missense_Mutation p.V603I 0.31 deleterious(0.05) possibly_damaging(0.628) TCGA-D7-A4YY-01 7 141773916 141773916 C A MGAM Intron 0.27 TCGA-D7-A4YY-01 7 142206734 142206734 T C TRBV10-2 Missense_Mutation p.M41V 0.09 deleterious(0.04) benign(0) TCGA-D7-A4YY-01 7 142231769 142231769 T A TRBV10-1 Missense_Mutation p.N50Y 0.25 tolerated(1) benign(0.002) TCGA-D7-A4YY-01 7 142231771 142231771 T C TRBV10-1 Missense_Mutation p.N49S 0.24 tolerated(0.14) benign(0.004) TCGA-D7-A4YY-01 7 142231777 142231777 T C TRBV10-1 Missense_Mutation p.N47S 0.21 tolerated(0.16) benign(0.086) TCGA-D7-A4YY-01 7 142231832 142231832 G A TRBV10-1 Missense_Mutation p.H29Y 0.23 tolerated(1) benign(0.007) TCGA-D7-A4YY-01 7 142231852 142231852 T C TRBV10-1 Missense_Mutation p.E22G 0.24 tolerated(1) benign(0) TCGA-D7-A4YY-01 7 151884817 151884817 G A KMT2C Silent p.S1592S 0.34 TCGA-D7-A4YY-01 7 154863077 154863077 C T HTR5A Silent p.C156C 0.33 TCGA-D7-A4YY-01 7 21920488 21920488 A G DNAH11 Missense_Mutation p.N4129D 0.20 probably_damaging(0.999) TCGA-D7-A4YY-01 7 23728932 23728932 G T FAM221A Missense_Mutation p.C95F 0.26 deleterious(0) benign(0.012) TCGA-D7-A4YY-01 7 27934891 27934891 G - JAZF1 Frame_Shift_Del p.V112* 0.24 TCGA-D7-A4YY-01 7 33014948 33014948 C T FKBP9 Silent p.N174N 0.32 TCGA-D7-A4YY-01 7 37780680 37780680 T - GPR141 Frame_Shift_Del p.F230Lfs*2 0.28 TCGA-D7-A4YY-01 7 45002262 45002262 G A MYO1G 3'Flank 0.33 TCGA-D7-A4YY-01 7 5427549 5427549 G A TNRC18 Missense_Mutation p.R636C 0.53 benign(0.043) TCGA-D7-A4YY-01 7 65842409 65842409 G A LINC00174 RNA 0.50 TCGA-D7-A4YY-01 7 71130460 71130460 A C WBSCR17 Missense_Mutation p.K382T 0.35 tolerated(0.54) benign(0.001) TCGA-D7-A4YY-01 7 71252708 71252708 C T CALN1 3'UTR 0.39 TCGA-D7-A4YY-01 7 75191425 75191425 C T HIP1 Missense_Mutation p.S357N 0.35 tolerated(0.19) benign(0.008) TCGA-D7-A4YY-01 7 7530221 7530221 C T COL28A1 Silent p.Q361Q 0.43 TCGA-D7-A4YY-01 7 77200395 77200395 C T PTPN12 Missense_Mutation p.R34W 0.39 deleterious(0) benign(0.189) TCGA-D7-A4YY-01 7 87104745 87104745 G A ABCB4 Missense_Mutation p.R13C 0.33 tolerated_low_confidence(0.07) benign(0.001) TCGA-D7-A4YY-01 7 98609737 98609737 C T TRRAP Missense_Mutation p.A3780V 0.32 probably_damaging(0.909) TCGA-D7-A4YY-01 7 98638150 98638150 C T SMURF1 Silent p.G493G 0.41 TCGA-D7-A4YY-01 7 99711374 99711374 C T TAF6 Missense_Mutation p.A125T 0.36 tolerated(0.34) benign(0.014) TCGA-D7-A4YY-01 7 99767927 99767927 C - GPC2 Frame_Shift_Del p.A556Hfs*31 0.35 TCGA-D7-A4YY-01 8 10755454 10755454 A C XKR6 3'UTR 0.28 TCGA-D7-A4YY-01 8 131916177 131916177 A G ADCY8 Silent p.T584T 0.55 TCGA-D7-A4YY-01 8 139618653 139618653 G T COL22A1 Missense_Mutation p.P1359T 0.63 unknown(0) TCGA-D7-A4YY-01 8 140715004 140715004 A G KCNK9 Missense_Mutation p.W78R 0.51 deleterious(0) probably_damaging(0.999) TCGA-D7-A4YY-01 8 142367316 142367316 G A GPR20 Silent p.R236R 0.33 TCGA-D7-A4YY-01 8 143558811 143558811 C T BAI1 Missense_Mutation p.R430W 0.37 deleterious(0) possibly_damaging(0.898) TCGA-D7-A4YY-01 8 144810229 144810229 G A FAM83H Missense_Mutation p.R468C 0.36 deleterious(0) probably_damaging(0.999) TCGA-D7-A4YY-01 8 144885864 144885864 C T SCRIB Missense_Mutation p.A1123T 0.37 possibly_damaging(0.861) TCGA-D7-A4YY-01 8 145001034 145001034 G A PLEC Missense_Mutation p.T1458M 0.38 unknown(0) TCGA-D7-A4YY-01 8 145101823 145101823 C G SPATC1 Missense_Mutation p.A581G 0.36 deleterious(0.01) possibly_damaging(0.713) TCGA-D7-A4YY-01 8 145109481 145109481 C - OPLAH Frame_Shift_Del p.G890Afs*8 0.18 TCGA-D7-A4YY-01 8 145722779 145722779 C A PPP1R16A Missense_Mutation p.L68I 0.41 tolerated(0.41) benign(0.094) TCGA-D7-A4YY-01 8 16007762 16007762 G A MSR1 Silent p.L319L 0.10 TCGA-D7-A4YY-01 8 195481 195481 C T ZNF596 Nonsense_Mutation p.R212* 0.37 TCGA-D7-A4YY-01 8 22173817 22173817 C T PIWIL2 Silent p.S756S 0.22 TCGA-D7-A4YY-01 8 23425872 23425872 G A SLC25A37 Silent p.A159A 0.31 TCGA-D7-A4YY-01 8 27308396 27308398 AGG - PTK2B In_Frame_Del p.E826del 0.35 TCGA-D7-A4YY-01 8 28210871 28210871 C T ZNF395 Missense_Mutation p.G213D 0.31 deleterious(0.01) probably_damaging(1) TCGA-D7-A4YY-01 8 28929687 28929687 C - KIF13B Frame_Shift_Del p.S1559Afs*3 0.32 TCGA-D7-A4YY-01 8 33247216 33247216 A G FUT10 Silent p.F159F 0.39 TCGA-D7-A4YY-01 8 41753957 41753957 G A ANK1 Silent p.I14I 0.31 TCGA-D7-A4YY-01 8 41834610 41834610 G A KAT6A Missense_Mutation p.R427W 0.33 probably_damaging(0.987) TCGA-D7-A4YY-01 8 54792097 54792097 C - RGS20 Frame_Shift_Del p.H151Ifs*3 0.47 TCGA-D7-A4YY-01 8 72754805 72754805 T G MSC 3'UTR 0.32 TCGA-D7-A4YY-01 8 77617679 77617679 C A ZFHX4 Missense_Mutation p.N452K 0.29 benign(0.005) TCGA-D7-A4YY-01 8 77775430 77775430 G T ZFHX4 Missense_Mutation p.Q3160H 0.44 benign(0.011) TCGA-D7-A4YY-01 8 89339521 89339521 A C MMP16 5'UTR 0.24 TCGA-D7-A4YY-01 9 100983416 100983416 C T TBC1D2 Missense_Mutation p.R358Q 0.48 tolerated(0.06) probably_damaging(0.995) TCGA-D7-A4YY-01 9 101536344 101536344 G T ANKS6 Missense_Mutation p.L546I 0.15 tolerated(0.23) benign(0.021) TCGA-D7-A4YY-01 9 101544793 101544793 T - ANKS6 Frame_Shift_Del p.N392Mfs*9 0.36 TCGA-D7-A4YY-01 9 104193132 104193132 T G ALDOB Missense_Mutation p.K13T 0.30 deleterious(0.03) possibly_damaging(0.715) TCGA-D7-A4YY-01 9 117087179 117087179 T C ORM1 Splice_Site p.X146_splice 0.23 TCGA-D7-A4YY-01 9 123723779 123723779 G A C5 Silent p.A1523A 0.36 TCGA-D7-A4YY-01 9 125004207 125004207 T - RBM18 Frame_Shift_Del p.R177Gfs*21 0.28 TCGA-D7-A4YY-01 9 125562773 125562773 C T OR1K1 Silent p.Y124Y 0.34 TCGA-D7-A4YY-01 9 129642652 129642652 G A ZBTB34 Missense_Mutation p.R321H 0.43 deleterious(0) probably_damaging(0.978) TCGA-D7-A4YY-01 9 131482918 131482918 C T PKN3 3'UTR 0.24 TCGA-D7-A4YY-01 9 131512933 131512933 C A ZER1 Missense_Mutation p.V441L 0.35 tolerated(0.1) benign(0.003) TCGA-D7-A4YY-01 9 131862838 131862838 G A CRAT Silent p.G312G 0.38 TCGA-D7-A4YY-01 9 135553727 135553727 A T GTF3C4 Missense_Mutation p.R241W 0.35 deleterious(0) probably_damaging(0.998) TCGA-D7-A4YY-01 9 138011444 138011444 G A OLFM1 Missense_Mutation p.R275H 0.42 tolerated(0.56) probably_damaging(0.954) TCGA-D7-A4YY-01 9 139753497 139753497 C T MAMDC4 Silent p.G999G 0.25 TCGA-D7-A4YY-01 9 140086489 140086489 C T TPRN 3'UTR 0.32 TCGA-D7-A4YY-01 9 140110805 140110805 C T NDOR1 Silent p.D586D 0.38 TCGA-D7-A4YY-01 9 19334985 19334985 G A DENND4C Missense_Mutation p.R824Q 0.28 deleterious(0) probably_damaging(0.987) TCGA-D7-A4YY-01 9 2039502 2039502 C A SMARCA2 Missense_Mutation p.P131Q 0.28 probably_damaging(0.983) TCGA-D7-A4YY-01 9 20881873 20881873 T C FOCAD Missense_Mutation p.L774S 0.32 deleterious(0) benign(0.28) TCGA-D7-A4YY-01 9 32973661 32973661 G T APTX Intron 0.27 TCGA-D7-A4YY-01 9 35748547 35748547 C A GBA2 Missense_Mutation p.R52L 0.41 tolerated_low_confidence(0.12) benign(0.039) TCGA-D7-A4YY-01 9 90497878 90497878 C G SPATA31E1 Silent p.P24P 0.31 TCGA-D7-A4YY-01 9 96715468 96715468 G A BARX1 Silent p.A75A 0.27 TCGA-D7-A4YY-01 9 98231285 98231285 C T PTCH1 Silent p.T666T 0.36 TCGA-D7-A4YY-01 X 103495216 103495216 G T ESX1 Missense_Mutation p.P305H 0.09 deleterious_low_confidence(0.02) unknown(0) TCGA-D7-A4YY-01 X 110035370 110035370 A C CHRDL1 Missense_Mutation p.F14V 0.62 tolerated(0.08) benign(0) TCGA-D7-A4YY-01 X 110491974 110491974 A C CAPN6 Missense_Mutation p.L436R 0.67 deleterious(0) probably_damaging(0.973) TCGA-D7-A4YY-01 X 118726484 118726484 A C NKRF Intron 0.71 TCGA-D7-A4YY-01 X 129205342 129205342 G A ELF4 Silent p.I195I 0.21 TCGA-D7-A4YY-01 X 130220338 130220338 C T ARHGAP36 Silent p.R439R 0.73 TCGA-D7-A4YY-01 X 13787306 13787306 T A OFD1 3'UTR 0.63 TCGA-D7-A4YY-01 X 148579806 148579806 G T IDS Silent p.A180A 0.66 TCGA-D7-A4YY-01 X 14868779 14868779 A C FANCB Silent p.P448P 0.84 TCGA-D7-A4YY-01 X 1584492 1584492 C T P2RY8 Silent p.T320T 0.54 TCGA-D7-A4YY-01 X 46434041 46434041 C T CHST7 Silent p.C225C 0.73 TCGA-D7-A4YY-01 X 48337473 48337473 G A FTSJ1 Silent p.A110A 0.67 TCGA-D7-A4YY-01 X 49065045 49065045 T C CACNA1F Missense_Mutation p.S1696G 0.09 tolerated(0.08) benign(0.134) TCGA-D7-A4YY-01 X 51076061 51076061 G A NUDT10 Missense_Mutation p.V82I 0.76 tolerated(0.66) benign(0.002) TCGA-D7-A4YY-01 X 70320595 70320595 C T FOXO4 Missense_Mutation p.T172I 0.67 deleterious(0) probably_damaging(0.937) TCGA-D7-A4YY-01 X 73071762 73071762 A - XIST RNA 0.69 TCGA-D7-A4YY-01 X 8538707 8538707 C T KAL1 Missense_Mutation p.A299T 0.09 tolerated(0.13) benign(0.009) TCGA-D7-A4YY-01 X 90690958 90690958 G T PABPC5 Missense_Mutation p.A128S 0.77 deleterious(0.03) benign(0.233) TCGA-D7-A4Z0-01 10 125506356 125506356 T G CPXM2 Missense_Mutation p.K732T 0.12 tolerated(0.3) benign(0.014) TCGA-D7-A4Z0-01 10 20568801 20568801 A C PLXDC2 3'UTR 0.09 TCGA-D7-A4Z0-01 10 20568879 20568879 A C PLXDC2 3'UTR 0.36 TCGA-D7-A4Z0-01 10 28270420 28270420 T G ARMC4 Missense_Mutation p.K304T 0.11 tolerated(0.43) benign(0.001) TCGA-D7-A4Z0-01 10 50681583 50681583 G C ERCC6 Silent p.L883L 0.10 TCGA-D7-A4Z0-01 10 55581742 55581742 A C PCDH15 Missense_Mutation p.L1917R 0.17 deleterious_low_confidence(0.03) unknown(0) TCGA-D7-A4Z0-01 10 64913946 64913946 G A NRBF2 Missense_Mutation p.E278K 0.16 deleterious(0) probably_damaging(0.947) TCGA-D7-A4Z0-01 10 69597785 69597785 A T DNAJC12 5'UTR 0.21 TCGA-D7-A4Z0-01 10 98742710 98742710 A G C10orf12 Silent p.L521L 0.17 TCGA-D7-A4Z0-01 11 103907453 103907453 A G DDI1 5'UTR 0.23 TCGA-D7-A4Z0-01 11 103908695 103908695 A C DDI1 Missense_Mutation p.K382T 0.10 deleterious(0.04) benign(0.104) TCGA-D7-A4Z0-01 11 105845156 105845156 A C GRIA4 Missense_Mutation p.E843D 0.11 tolerated(0.13) probably_damaging(0.988) TCGA-D7-A4Z0-01 11 116653713 116653713 T C ZNF259 Silent p.L338L 0.07 TCGA-D7-A4Z0-01 11 116653717 116653717 T C ZNF259 Missense_Mutation p.E337G 0.07 deleterious(0) probably_damaging(0.998) TCGA-D7-A4Z0-01 11 117332257 117332257 G A DSCAML1 Silent p.A1167A 0.07 TCGA-D7-A4Z0-01 11 123810958 123810958 T C OR4D5 Missense_Mutation p.L212P 0.20 deleterious(0) probably_damaging(0.999) TCGA-D7-A4Z0-01 11 123894603 123894603 A C OR10G9 Missense_Mutation p.K295T 0.14 deleterious(0.01) benign(0.367) TCGA-D7-A4Z0-01 11 124756666 124756666 A T ROBO4 Missense_Mutation p.Y830N 0.14 deleterious(0) possibly_damaging(0.485) TCGA-D7-A4Z0-01 11 134010576 134010576 C T JAM3 Missense_Mutation p.T56M 0.13 tolerated(0.06) benign(0.223) TCGA-D7-A4Z0-01 11 20066813 20066813 T G NAV2 Missense_Mutation p.S1190A 0.12 tolerated(0.08) benign(0.001) TCGA-D7-A4Z0-01 11 2154862 2154862 C T IGF2 Missense_Mutation p.R120H 0.18 deleterious(0.01) probably_damaging(0.995) TCGA-D7-A4Z0-01 11 48510658 48510658 T C OR4A47 Missense_Mutation p.F105S 0.10 deleterious_low_confidence(0.04) benign(0.082) TCGA-D7-A4Z0-01 11 5172765 5172765 A G OR52A1 Missense_Mutation p.F279L 0.12 tolerated(1) benign(0.002) TCGA-D7-A4Z0-01 11 5255610 5255610 T G HBD Missense_Mutation p.K18N 0.18 deleterious(0.03) possibly_damaging(0.52) TCGA-D7-A4Z0-01 11 55595086 55595086 T C OR5L2 Missense_Mutation p.L131P 0.18 deleterious(0) probably_damaging(0.999) TCGA-D7-A4Z0-01 11 55595254 55595254 T G OR5L2 Missense_Mutation p.L187R 0.15 deleterious(0) probably_damaging(0.992) TCGA-D7-A4Z0-01 11 57577603 57577603 C T CTNND1 Nonsense_Mutation p.R820* 0.12 TCGA-D7-A4Z0-01 11 5799454 5799454 G C OR52N5 Nonsense_Mutation p.Y137* 0.14 TCGA-D7-A4Z0-01 11 58979956 58979956 T C MPEG1 Missense_Mutation p.K128R 0.18 tolerated(0.06) probably_damaging(0.998) TCGA-D7-A4Z0-01 11 62430750 62430752 GGA - C11orf48 In_Frame_Del p.P240del 0.25 TCGA-D7-A4Z0-01 12 100043118 100043118 T G FAM71C Missense_Mutation p.L223R 0.25 tolerated(0.05) probably_damaging(0.957) TCGA-D7-A4Z0-01 12 10124213 10124213 T G CLEC12A Silent p.T16T 0.09 TCGA-D7-A4Z0-01 12 108045467 108045467 A C BTBD11 Missense_Mutation p.K1003T 0.19 tolerated(0.44) probably_damaging(0.957) TCGA-D7-A4Z0-01 12 111342574 111342574 T G CCDC63 Missense_Mutation p.F509V 0.15 tolerated(0.32) benign(0.015) TCGA-D7-A4Z0-01 12 114395629 114395629 C T RBM19 Silent p.G266G 0.15 TCGA-D7-A4Z0-01 12 116457702 116457702 T G MED13L Missense_Mutation p.K234T 0.06 deleterious(0) unknown(0) TCGA-D7-A4Z0-01 12 129558890 129558890 T G TMEM132D Missense_Mutation p.K944Q 0.15 deleterious(0) possibly_damaging(0.839) TCGA-D7-A4Z0-01 12 13240138 13240138 A C GSG1 Missense_Mutation p.L209V 0.22 tolerated(0.07) benign(0.073) TCGA-D7-A4Z0-01 12 15262280 15262280 A G RERG Silent p.L122L 0.16 TCGA-D7-A4Z0-01 12 24736348 24736348 G A LINC00477 RNA 0.12 TCGA-D7-A4Z0-01 12 29644030 29644030 T G OVCH1 Missense_Mutation p.T184P 0.13 deleterious(0.04) possibly_damaging(0.905) TCGA-D7-A4Z0-01 12 4479439 4479439 A G FGF23 3'UTR 0.23 TCGA-D7-A4Z0-01 12 55420426 55420426 A G NEUROD4 Missense_Mutation p.K68R 0.17 tolerated(0.37) benign(0.03) TCGA-D7-A4Z0-01 12 97085072 97085072 T G C12orf55 Missense_Mutation p.V2083G 0.20 deleterious(0.01) benign(0) TCGA-D7-A4Z0-01 12 97158013 97158013 A C C12orf55 Silent p.R2709R 0.11 TCGA-D7-A4Z0-01 13 20041386 20041386 T G TPTE2 Missense_Mutation p.K164T 0.21 tolerated(0.53) benign(0.014) TCGA-D7-A4Z0-01 13 23908498 23908498 A C SACS Missense_Mutation p.F3173V 0.07 probably_damaging(0.977) TCGA-D7-A4Z0-01 13 23908500 23908500 T G SACS Missense_Mutation p.K3172T 0.07 benign(0.196) TCGA-D7-A4Z0-01 13 25367370 25367370 T G RNF17 Missense_Mutation p.F376V 0.25 tolerated(0.58) possibly_damaging(0.879) TCGA-D7-A4Z0-01 13 26436488 26436488 T C ATP8A2 Missense_Mutation p.F1042S 0.10 deleterious(0) probably_damaging(0.988) TCGA-D7-A4Z0-01 13 28959121 28959121 C T FLT1 Missense_Mutation p.A673T 0.09 tolerated(0.12) benign(0.025) TCGA-D7-A4Z0-01 13 35758142 35758142 A G NBEA Missense_Mutation p.S1621G 0.22 tolerated_low_confidence(0.12) benign(0.01) TCGA-D7-A4Z0-01 13 38160293 38160293 T C POSTN Missense_Mutation p.D293G 0.22 deleterious(0.02) probably_damaging(0.942) TCGA-D7-A4Z0-01 13 38162024 38162024 T G POSTN Missense_Mutation p.N181H 0.09 tolerated(0.5) benign(0.062) TCGA-D7-A4Z0-01 13 46732680 46732680 A C LCP1 Missense_Mutation p.V112G 0.25 deleterious(0.05) benign(0.002) TCGA-D7-A4Z0-01 13 46917551 46917551 A C KIAA0226L Missense_Mutation p.L653R 0.22 deleterious(0.04) benign(0.111) TCGA-D7-A4Z0-01 13 47409690 47409690 T G HTR2A Missense_Mutation p.N233T 0.13 deleterious(0.01) possibly_damaging(0.596) TCGA-D7-A4Z0-01 13 52604528 52604528 G A UTP14C Missense_Mutation p.V530M 0.17 tolerated(0.14) benign(0.048) TCGA-D7-A4Z0-01 13 78477428 78477428 T G EDNRB Missense_Mutation p.I312L 0.22 tolerated(0.1) benign(0.307) TCGA-D7-A4Z0-01 13 78492671 78492671 A C EDNRB Missense_Mutation p.V103G 0.14 deleterious_low_confidence(0) benign(0.311) TCGA-D7-A4Z0-01 13 88328833 88328833 A C SLITRK5 Missense_Mutation p.K397T 0.09 tolerated(0.06) possibly_damaging(0.874) TCGA-D7-A4Z0-01 13 94197663 94197663 A T GPC6 Missense_Mutation p.K103M 0.20 deleterious(0) benign(0.309) TCGA-D7-A4Z0-01 13 94680041 94680041 G C GPC6 Missense_Mutation p.C257S 0.13 deleterious(0) probably_damaging(0.999) TCGA-D7-A4Z0-01 14 20586335 20586335 A G OR4K17 Missense_Mutation p.K257R 0.14 tolerated(1) benign(0.002) TCGA-D7-A4Z0-01 14 22090628 22090628 T G TRAV1-1 Silent p.S78S 0.08 TCGA-D7-A4Z0-01 14 26917982 26917982 A C NOVA1 Missense_Mutation p.L236R 0.21 deleterious(0.01) unknown(0) TCGA-D7-A4Z0-01 14 33293936 33293936 T G AKAP6 Missense_Mutation p.L2306R 0.20 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D7-A4Z0-01 14 51467557 51467557 A C TRIM9 Silent p.A436A 0.16 TCGA-D7-A4Z0-01 14 56755305 56755305 C T PELI2 Missense_Mutation p.R154W 0.14 deleterious(0) probably_damaging(0.992) TCGA-D7-A4Z0-01 14 68241785 68241785 G A ZFYVE26 Silent p.P1756P 0.21 TCGA-D7-A4Z0-01 14 72944985 72944985 T G RGS6 Missense_Mutation p.L268V 0.20 deleterious(0.01) probably_damaging(0.954) TCGA-D7-A4Z0-01 14 94929303 94929303 A G SERPINA9 3'UTR 0.33 TCGA-D7-A4Z0-01 15 20170078 20170078 T G IGHV1OR15-9 Missense_Mutation p.E65A 0.09 deleterious(0) possibly_damaging(0.628) TCGA-D7-A4Z0-01 15 25315642 25315642 T C SNORD116-8 RNA 0.15 TCGA-D7-A4Z0-01 15 25958965 25958965 A C ATP10A Missense_Mutation p.F734V 0.22 tolerated(0.07) benign(0.431) TCGA-D7-A4Z0-01 15 42116181 42116181 T C MAPKBP1 Silent p.L1385L 0.15 TCGA-D7-A4Z0-01 15 56152694 56152694 A C NEDD4 Missense_Mutation p.L638V 0.11 tolerated(0.22) benign(0.005) TCGA-D7-A4Z0-01 15 83790679 83790679 T G TM6SF1 Silent p.T135T 0.09 TCGA-D7-A4Z0-01 15 84582078 84582078 T G ADAMTSL3 Silent p.T645T 0.24 TCGA-D7-A4Z0-01 15 84651194 84651194 A C ADAMTSL3 Silent p.R938R 0.19 TCGA-D7-A4Z0-01 15 87089239 87089239 T C AGBL1 Missense_Mutation p.C852R 0.18 deleterious(0) probably_damaging(1) TCGA-D7-A4Z0-01 16 20998712 20998712 C T DNAH3 Missense_Mutation p.R2314H 0.11 deleterious(0) probably_damaging(1) TCGA-D7-A4Z0-01 16 3063438 3063438 C T CLDN9 Silent p.C25C 0.12 TCGA-D7-A4Z0-01 16 3779644 3779644 C T CREBBP Missense_Mutation p.V1802M 0.08 unknown(0) TCGA-D7-A4Z0-01 16 56832411 56832411 C T NUP93 Silent p.D107D 0.11 TCGA-D7-A4Z0-01 16 57760055 57760055 G A CCDC135 Missense_Mutation p.A612T 0.18 tolerated(0.8) benign(0.001) TCGA-D7-A4Z0-01 17 11520913 11520913 G A DNAH9 Missense_Mutation p.E364K 0.14 probably_damaging(0.974) TCGA-D7-A4Z0-01 17 11671828 11671828 A C DNAH9 Missense_Mutation p.K2410T 0.17 probably_damaging(0.986) TCGA-D7-A4Z0-01 17 12655799 12655799 G T MYOCD Missense_Mutation p.M398I 0.07 tolerated(0.85) benign(0.192) TCGA-D7-A4Z0-01 17 29231427 29231427 T G TEFM Missense_Mutation p.D51A 0.11 tolerated(0.17) benign(0.025) TCGA-D7-A4Z0-01 17 3195720 3195720 A C OR3A1 Missense_Mutation p.L53V 0.17 tolerated(0.36) benign(0.013) TCGA-D7-A4Z0-01 17 51902173 51902173 A T KIF2B Missense_Mutation p.K593N 0.13 tolerated(0.16) benign(0.007) TCGA-D7-A4Z0-01 17 5463142 5463142 G T NLRP1 Missense_Mutation p.Q292K 0.12 tolerated(0.33) benign(0.002) TCGA-D7-A4Z0-01 17 61957795 61957795 G A GH2 3'UTR 0.20 TCGA-D7-A4Z0-01 17 8093038 8093038 C G C17orf59 Missense_Mutation p.E141Q 0.07 tolerated_low_confidence(0.47) benign(0.001) TCGA-D7-A4Z0-01 17 9757876 9757876 T G GLP2R Missense_Mutation p.L190R 0.14 deleterious(0) probably_damaging(0.961) TCGA-D7-A4Z0-01 18 25565074 25565074 A C CDH2 Missense_Mutation p.V700G 0.17 deleterious(0) probably_damaging(1) TCGA-D7-A4Z0-01 18 42531540 42531540 C T SETBP1 Silent p.A745A 0.16 TCGA-D7-A4Z0-01 18 42532135 42532135 A C SETBP1 Missense_Mutation p.S944R 0.16 tolerated(0.14) possibly_damaging(0.553) TCGA-D7-A4Z0-01 18 47488655 47488655 A C MYO5B Missense_Mutation p.L509R 0.07 deleterious(0) probably_damaging(0.995) TCGA-D7-A4Z0-01 18 50961524 50961524 A G DCC Silent p.G1058G 0.14 TCGA-D7-A4Z0-01 18 61597380 61597380 T G SERPINB10 Missense_Mutation p.L198V 0.15 tolerated(0.23) benign(0.345) TCGA-D7-A4Z0-01 19 15795950 15795950 G A CYP4F12 Missense_Mutation p.R353H 0.17 tolerated(0.08) benign(0.032) TCGA-D7-A4Z0-01 19 16942380 16942380 C T SIN3B Silent p.N101N 0.16 TCGA-D7-A4Z0-01 19 19339180 19339180 G A NCAN Silent p.P917P 0.07 TCGA-D7-A4Z0-01 19 20808392 20808392 T G ZNF626 Missense_Mutation p.K97N 0.13 deleterious(0.04) possibly_damaging(0.688) TCGA-D7-A4Z0-01 19 21992583 21992583 A C ZNF43 Missense_Mutation p.F86V 0.10 tolerated(0.07) benign(0.008) TCGA-D7-A4Z0-01 19 22836737 22836737 A G ZNF492 Missense_Mutation p.K17R 0.09 deleterious(0) possibly_damaging(0.636) TCGA-D7-A4Z0-01 19 22846703 22846703 A C ZNF492 Missense_Mutation p.N78H 0.25 deleterious(0) possibly_damaging(0.902) TCGA-D7-A4Z0-01 19 37005915 37005915 T G ZNF260 Missense_Mutation p.S76R 0.15 deleterious(0.01) benign(0.257) TCGA-D7-A4Z0-01 19 37440630 37440630 T G ZNF568 Missense_Mutation p.L192R 0.13 tolerated(0.36) benign(0.001) TCGA-D7-A4Z0-01 19 37441098 37441098 A C ZNF568 Missense_Mutation p.N348T 0.10 tolerated(0.26) probably_damaging(0.998) TCGA-D7-A4Z0-01 19 38190535 38190535 C T ZNF607 Missense_Mutation p.R166H 0.14 deleterious(0.01) possibly_damaging(0.738) TCGA-D7-A4Z0-01 19 43097731 43097731 A T CEACAM8 Missense_Mutation p.L129H 0.15 tolerated(0.53) possibly_damaging(0.497) TCGA-D7-A4Z0-01 19 43579745 43579745 T - PSG2 Frame_Shift_Del p.N157Tfs*9 0.13 TCGA-D7-A4Z0-01 19 43697417 43697417 A C PSG4 3'UTR 0.16 TCGA-D7-A4Z0-01 19 44679669 44679669 A T ZNF226 Missense_Mutation p.K85M 0.20 deleterious(0.03) benign(0.258) TCGA-D7-A4Z0-01 19 49814455 49814455 T C SLC6A16 Silent p.Q50Q 0.11 TCGA-D7-A4Z0-01 19 51135733 51135733 A C SYT3 Missense_Mutation p.L162V 0.21 tolerated(0.21) probably_damaging(0.991) TCGA-D7-A4Z0-01 19 51890495 51890495 C T LIM2 Missense_Mutation p.R68H 0.16 tolerated_low_confidence(0.54) benign(0) TCGA-D7-A4Z0-01 19 54299255 54299255 C A NLRP12 Missense_Mutation p.A986S 0.12 tolerated(0.25) unknown(0) TCGA-D7-A4Z0-01 19 54696123 54696123 C T TSEN34 Missense_Mutation p.P215L 0.18 deleterious(0.01) possibly_damaging(0.76) TCGA-D7-A4Z0-01 19 56952809 56952809 T C ZNF667 Missense_Mutation p.R519G 0.10 deleterious(0) probably_damaging(0.999) TCGA-D7-A4Z0-01 19 57326640 57326640 T C PEG3 Missense_Mutation p.K1057R 0.12 tolerated(0.27) benign(0.045) TCGA-D7-A4Z0-01 19 57327880 57327880 C A PEG3 Nonsense_Mutation p.E644* 0.10 TCGA-D7-A4Z0-01 19 57328104 57328104 T G PEG3 Missense_Mutation p.K569T 0.11 deleterious(0.01) benign(0.001) TCGA-D7-A4Z0-01 19 58048993 58048993 A G ZNF549 Silent p.Q207Q 0.12 TCGA-D7-A4Z0-01 19 7809855 7809855 A G CD209 Missense_Mutation p.L291P 0.10 deleterious(0) probably_damaging(1) TCGA-D7-A4Z0-01 19 9060081 9060081 A C MUC16 Missense_Mutation p.L9122R 0.18 unknown(0) TCGA-D7-A4Z0-01 19 9061830 9061830 A C MUC16 Missense_Mutation p.L8539R 0.14 unknown(0) TCGA-D7-A4Z0-01 19 9076366 9076366 T G MUC16 Missense_Mutation p.S3694R 0.15 unknown(0) TCGA-D7-A4Z0-01 19 9086887 9086887 A G MUC16 Missense_Mutation p.V1643A 0.15 unknown(0) TCGA-D7-A4Z0-01 19 9639571 9639571 T G ZNF426 Silent p.R384R 0.12 TCGA-D7-A4Z0-01 1 103449740 103449740 A T COL11A1 Missense_Mutation p.L837H 0.17 unknown(0) TCGA-D7-A4Z0-01 1 10700034 10700034 C T CASZ1 Silent p.R1415R 0.16 TCGA-D7-A4Z0-01 1 108023350 108023350 A G NTNG1 Missense_Mutation p.E503G 0.20 deleterious(0.02) possibly_damaging(0.49) TCGA-D7-A4Z0-01 1 119958041 119958041 C T HSD3B2 5'UTR 0.15 TCGA-D7-A4Z0-01 1 1268161 1268161 C T TAS1R3 Missense_Mutation p.A417V 0.10 tolerated(0.39) benign(0.004) TCGA-D7-A4Z0-01 1 12887678 12887678 A C PRAMEF11 Missense_Mutation p.L60R 0.13 deleterious(0) probably_damaging(0.951) TCGA-D7-A4Z0-01 1 153390570 153390570 T A S100A7A Silent p.T4T 0.10 TCGA-D7-A4Z0-01 1 158064484 158064484 T C KIRREL Silent p.S616S 0.17 TCGA-D7-A4Z0-01 1 158151310 158151310 C T CD1D Missense_Mutation p.R43C 0.13 deleterious(0.05) benign(0.049) TCGA-D7-A4Z0-01 1 158368853 158368853 A G OR10T2 Missense_Mutation p.L135P 0.07 deleterious(0) possibly_damaging(0.701) TCGA-D7-A4Z0-01 1 158585082 158585082 A C SPTA1 Missense_Mutation p.L2238V 0.18 deleterious(0) probably_damaging(0.999) TCGA-D7-A4Z0-01 1 158612297 158612297 T G SPTA1 Missense_Mutation p.E1547D 0.22 deleterious(0.01) benign(0.186) TCGA-D7-A4Z0-01 1 160793532 160793532 A C LY9 Missense_Mutation p.E592D 0.16 tolerated(0.25) benign(0.173) TCGA-D7-A4Z0-01 1 186026528 186026528 T G HMCN1 Missense_Mutation p.L2436R 0.16 probably_damaging(0.999) TCGA-D7-A4Z0-01 1 186122892 186122892 A C HMCN1 Missense_Mutation p.E5010A 0.21 probably_damaging(0.982) TCGA-D7-A4Z0-01 1 197390846 197390846 T G CRB1 Missense_Mutation p.F630V 0.12 tolerated(0.2) benign(0.002) TCGA-D7-A4Z0-01 1 211093380 211093380 A C KCNH1 Missense_Mutation p.V355G 0.14 deleterious(0) probably_damaging(0.969) TCGA-D7-A4Z0-01 1 240370433 240370433 A G FMN2 Missense_Mutation p.E774G 0.09 unknown(0) TCGA-D7-A4Z0-01 1 240555835 240555835 A G FMN2 Missense_Mutation p.E1628G 0.21 possibly_damaging(0.684) TCGA-D7-A4Z0-01 1 247902445 247902445 T G OR14K1 Missense_Mutation p.C177G 0.06 deleterious(0) probably_damaging(0.999) TCGA-D7-A4Z0-01 1 31414062 31414062 T A PUM1 Nonsense_Mutation p.K1060* 0.14 TCGA-D7-A4Z0-01 1 65157095 65157095 G A CACHD1 Missense_Mutation p.D1175N 0.11 tolerated_low_confidence(0.27) benign(0.007) TCGA-D7-A4Z0-01 1 66827326 66827326 T C PDE4B Silent p.S290S 0.19 TCGA-D7-A4Z0-01 1 74621436 74621436 A C LRRIQ3 Missense_Mutation p.L230V 0.09 deleterious(0.02) benign(0.346) TCGA-D7-A4Z0-01 1 74621467 74621467 A C LRRIQ3 Silent p.V219V 0.08 TCGA-D7-A4Z0-01 1 79387375 79387375 A G ELTD1 Missense_Mutation p.S394P 0.18 deleterious(0) probably_damaging(0.936) TCGA-D7-A4Z0-01 1 79387376 79387376 G T ELTD1 Nonsense_Mutation p.Y393* 0.17 TCGA-D7-A4Z0-01 20 35261962 35261962 C T SLA2 Missense_Mutation p.A88T 0.16 deleterious(0.02) probably_damaging(0.998) TCGA-D7-A4Z0-01 20 43355923 43355923 G A WISP2 Missense_Mutation p.R243H 0.08 tolerated(0.24) benign(0.002) TCGA-D7-A4Z0-01 21 19687479 19687479 T G TMPRSS15 Silent p.S672S 0.11 TCGA-D7-A4Z0-01 21 28210466 28210466 A C ADAMTS1 Missense_Mutation p.L779R 0.13 deleterious(0) probably_damaging(1) TCGA-D7-A4Z0-01 21 28210864 28210864 C T ADAMTS1 Missense_Mutation p.G700S 0.14 deleterious(0) probably_damaging(1) TCGA-D7-A4Z0-01 21 28211926 28211926 A C ADAMTS1 Missense_Mutation p.F670V 0.16 deleterious(0) probably_damaging(0.998) TCGA-D7-A4Z0-01 22 23063474 23063474 G T IGLV3-19 Missense_Mutation p.A61S 0.07 tolerated(0.16) benign(0.123) TCGA-D7-A4Z0-01 22 26890067 26890067 T G SRRD 3'UTR 0.08 TCGA-D7-A4Z0-01 22 39417452 39417452 G A APOBEC3D 5'UTR 0.09 TCGA-D7-A4Z0-01 22 42522680 42522680 A C CYP2D6 Missense_Mutation p.F464V 0.20 deleterious(0) probably_damaging(0.998) TCGA-D7-A4Z0-01 22 46859806 46859806 G A CELSR1 Silent p.S1327S 0.07 TCGA-D7-A4Z0-01 22 50217634 50217634 G A BRD1 Missense_Mutation p.P111L 0.10 tolerated(0.12) benign(0.002) TCGA-D7-A4Z0-01 2 116599979 116599979 G T DPP10 3'Flank 0.17 TCGA-D7-A4Z0-01 2 125530496 125530496 A T CNTNAP5 Missense_Mutation p.K884M 0.15 deleterious(0) probably_damaging(1) TCGA-D7-A4Z0-01 2 137852673 137852673 T G THSD7B Missense_Mutation p.L394R 0.18 tolerated(0.35) probably_damaging(0.975) TCGA-D7-A4Z0-01 2 138169270 138169270 A C THSD7B Missense_Mutation p.Q929H 0.19 tolerated(0.05) benign(0.387) TCGA-D7-A4Z0-01 2 141641403 141641403 A T LRP1B Silent p.A1384A 0.07 TCGA-D7-A4Z0-01 2 168103841 168103841 A T XIRP2 Missense_Mutation p.K1980M 0.08 benign(0.012) TCGA-D7-A4Z0-01 2 171242770 171242770 T G MYO3B Silent p.T454T 0.19 TCGA-D7-A4Z0-01 2 177036916 177036916 G A HOXD3 Missense_Mutation p.D405N 0.12 deleterious(0.02) probably_damaging(0.948) TCGA-D7-A4Z0-01 2 179415900 179415900 T G TTN Missense_Mutation p.K30453T 0.17 TCGA-D7-A4Z0-01 2 179472589 179472589 A C TTN Missense_Mutation p.L17642R 0.08 TCGA-D7-A4Z0-01 2 179578774 179578774 T G TTN Missense_Mutation p.T8871P 0.14 TCGA-D7-A4Z0-01 2 179613894 179613894 T C TTN Intron 0.12 TCGA-D7-A4Z0-01 2 179616053 179616053 T G TTN Intron 0.18 TCGA-D7-A4Z0-01 2 196771459 196771459 A C DNAH7 Missense_Mutation p.L1420R 0.13 deleterious(0) probably_damaging(1) TCGA-D7-A4Z0-01 2 202150023 202150024 GA - CASP8 Frame_Shift_Del p.E490Afs*7 0.15 TCGA-D7-A4Z0-01 2 210561388 210561388 A G MAP2 Missense_Mutation p.R1435G 0.18 deleterious(0) probably_damaging(0.998) TCGA-D7-A4Z0-01 2 212248599 212248599 T A ERBB4 Missense_Mutation p.K1223M 0.11 tolerated(0.05) possibly_damaging(0.702) TCGA-D7-A4Z0-01 2 212426795 212426795 T C ERBB4 Missense_Mutation p.S774G 0.12 tolerated(0.35) probably_damaging(0.996) TCGA-D7-A4Z0-01 2 212483974 212483974 A G ERBB4 Silent p.T743T 0.17 TCGA-D7-A4Z0-01 2 220409502 220409502 A G TMEM198 Missense_Mutation p.D18G 0.14 tolerated(0.56) possibly_damaging(0.539) TCGA-D7-A4Z0-01 2 225702525 225702525 T A DOCK10 Missense_Mutation p.K935M 0.22 tolerated(0.18) probably_damaging(0.998) TCGA-D7-A4Z0-01 2 226447427 226447427 A G NYAP2 Missense_Mutation p.S432G 0.16 deleterious(0) benign(0.253) TCGA-D7-A4Z0-01 2 227953493 227953493 C A COL4A4 Missense_Mutation p.G500V 0.11 probably_damaging(0.993) TCGA-D7-A4Z0-01 2 228886451 228886451 T C SPHKAP Missense_Mutation p.S225G 0.17 deleterious(0.03) benign(0.22) TCGA-D7-A4Z0-01 2 25384357 25384357 G A POMC Missense_Mutation p.R133C 0.17 deleterious(0) possibly_damaging(0.87) TCGA-D7-A4Z0-01 2 26671585 26671585 G A DRC1 Missense_Mutation p.A475T 0.15 tolerated(0.34) benign(0.01) TCGA-D7-A4Z0-01 2 31215824 31215824 C G GALNT14 Intron 0.10 TCGA-D7-A4Z0-01 2 33952773 33952773 A G AC009499.1 Intron 0.13 TCGA-D7-A4Z0-01 2 39664044 39664044 C T MAP4K3 Missense_Mutation p.D29N 0.12 deleterious(0.02) possibly_damaging(0.857) TCGA-D7-A4Z0-01 2 40656259 40656259 T G SLC8A1 Silent p.R388R 0.12 TCGA-D7-A4Z0-01 2 44531329 44531329 T C SLC3A1 Missense_Mutation p.M395T 0.07 tolerated(0.18) benign(0.008) TCGA-D7-A4Z0-01 2 49191058 49191058 A C FSHR Missense_Mutation p.V301G 0.14 tolerated(0.59) benign(0.003) TCGA-D7-A4Z0-01 2 64144075 64144075 A G VPS54 Silent p.A729A 0.13 TCGA-D7-A4Z0-01 2 71058947 71058947 A C CD207 Missense_Mutation p.F241V 0.12 deleterious(0.01) probably_damaging(1) TCGA-D7-A4Z0-01 2 71060118 71060118 A G CD207 Silent p.S210S 0.20 TCGA-D7-A4Z0-01 2 72606879 72606879 A C EXOC6B Missense_Mutation p.L701V 0.11 deleterious(0.03) benign(0.005) TCGA-D7-A4Z0-01 2 73747132 73747132 G A ALMS1 Missense_Mutation p.R3256H 0.04 benign(0.002) TCGA-D7-A4Z0-01 2 89399387 89399387 C G IGKV1-16 Missense_Mutation p.A106P 0.06 deleterious(0) probably_damaging(0.991) TCGA-D7-A4Z0-01 3 164735642 164735642 A C SI Silent p.T1180T 0.07 TCGA-D7-A4Z0-01 3 164735779 164735779 A C SI Missense_Mutation p.L1167V 0.05 deleterious(0) possibly_damaging(0.452) TCGA-D7-A4Z0-01 3 167034828 167034828 G A ZBBX Missense_Mutation p.P387S 0.09 tolerated(0.17) benign(0.221) TCGA-D7-A4Z0-01 3 178560470 178560470 T G KCNMB2 Missense_Mutation p.N151K 0.13 deleterious(0.01) benign(0.371) TCGA-D7-A4Z0-01 3 183273168 183273168 C T KLHL6 Missense_Mutation p.A92T 0.14 deleterious(0.03) probably_damaging(0.999) TCGA-D7-A4Z0-01 3 21462673 21462673 A C ZNF385D 3'UTR 0.12 TCGA-D7-A4Z0-01 3 25833414 25833414 A C OXSM Missense_Mutation p.E301D 0.14 deleterious(0) probably_damaging(0.998) TCGA-D7-A4Z0-01 3 35778853 35778853 A G ARPP21 Missense_Mutation p.Q514R 0.15 deleterious(0.03) benign(0.007) TCGA-D7-A4Z0-01 3 38739228 38739228 T G SCN10A Missense_Mutation p.K1828T 0.07 deleterious(0) probably_damaging(0.999) TCGA-D7-A4Z0-01 3 74350894 74350894 A G CNTN3 Missense_Mutation p.S617P 0.12 deleterious(0) probably_damaging(0.999) TCGA-D7-A4Z0-01 3 7456743 7456743 A C GRM7 Missense_Mutation p.E356A 0.18 tolerated(0.25) possibly_damaging(0.492) TCGA-D7-A4Z0-01 3 7721845 7721845 T C GRM7 Missense_Mutation p.L854P 0.14 deleterious(0.01) possibly_damaging(0.559) TCGA-D7-A4Z0-01 3 77530266 77530266 T C ROBO2 Missense_Mutation p.L204P 0.21 deleterious(0) probably_damaging(0.968) TCGA-D7-A4Z0-01 3 97356863 97356863 A C EPHA6 Missense_Mutation p.K907N 0.19 deleterious(0.03) probably_damaging(0.999) TCGA-D7-A4Z0-01 3 97454923 97454923 A C EPHA6 Missense_Mutation p.N1030T 0.10 deleterious(0.02) probably_damaging(0.998) TCGA-D7-A4Z0-01 4 101946953 101946953 C G PPP3CA 3'UTR 0.30 TCGA-D7-A4Z0-01 4 126370822 126370822 T G FAT4 Missense_Mutation p.L2884R 0.14 probably_damaging(0.965) TCGA-D7-A4Z0-01 4 154768 154768 T G ZNF718 RNA 0.13 TCGA-D7-A4Z0-01 4 155191053 155191053 T A DCHS2 Silent p.S1737S 0.16 TCGA-D7-A4Z0-01 4 155720087 155720087 A C RBM46 Missense_Mutation p.K258T 0.16 tolerated(0.21) benign(0.13) TCGA-D7-A4Z0-01 4 156629419 156629419 A C GUCY1A3 Missense_Mutation p.T117P 0.17 deleterious(0.04) benign(0.363) TCGA-D7-A4Z0-01 4 183664404 183664404 G A TENM3 Missense_Mutation p.R1154Q 0.11 deleterious(0.03) benign(0.045) TCGA-D7-A4Z0-01 4 189020226 189020226 T C TRIML2 Missense_Mutation p.E145G 0.20 deleterious(0) possibly_damaging(0.743) TCGA-D7-A4Z0-01 4 57860970 57860970 T A POLR2B Missense_Mutation p.C172S 0.16 tolerated(0.37) benign(0) TCGA-D7-A4Z0-01 4 62812667 62812667 T C LPHN3 Silent p.L751L 0.15 TCGA-D7-A4Z0-01 4 76787343 76787343 T G PPEF2 Missense_Mutation p.E640A 0.16 deleterious(0.01) benign(0.26) TCGA-D7-A4Z0-01 4 81967513 81967513 A C BMP3 Missense_Mutation p.E313A 0.16 tolerated(0.22) benign(0.066) TCGA-D7-A4Z0-01 4 88534300 88534300 A C DSPP Missense_Mutation p.K321T 0.27 benign(0.02) TCGA-D7-A4Z0-01 5 121787094 121787094 A C SNCAIP Missense_Mutation p.N851T 0.12 tolerated(0.13) benign(0.04) TCGA-D7-A4Z0-01 5 128302234 128302234 T A SLC27A6 Missense_Mutation p.L135H 0.11 deleterious(0) probably_damaging(0.999) TCGA-D7-A4Z0-01 5 13729585 13729585 A C DNAH5 Missense_Mutation p.L3949R 0.16 probably_damaging(0.928) TCGA-D7-A4Z0-01 5 13769199 13769199 T G DNAH5 Missense_Mutation p.K3256T 0.15 benign(0.011) TCGA-D7-A4Z0-01 5 140203177 140203177 T C PCDHA5 Missense_Mutation p.L606P 0.10 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-D7-A4Z0-01 5 140482134 140482134 A G PCDHB3 Missense_Mutation p.D634G 0.16 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-D7-A4Z0-01 5 140723787 140723787 G A PCDHGA3 Missense_Mutation p.G63R 0.18 tolerated_low_confidence(0.09) possibly_damaging(0.712) TCGA-D7-A4Z0-01 5 147470754 147470754 G C SPINK5 Missense_Mutation p.R210P 0.17 deleterious(0.02) possibly_damaging(0.589) TCGA-D7-A4Z0-01 5 150925275 150925275 A G FAT2 Silent p.L1805L 0.15 TCGA-D7-A4Z0-01 5 153390808 153390808 A C FAM114A2 Missense_Mutation p.L329R 0.10 deleterious(0) probably_damaging(0.933) TCGA-D7-A4Z0-01 5 156590352 156590352 T G FAM71B Missense_Mutation p.Q308H 0.16 deleterious(0.03) probably_damaging(0.931) TCGA-D7-A4Z0-01 5 32789795 32789795 T G AC026703.1 Silent p.T96T 0.12 TCGA-D7-A4Z0-01 5 35641550 35641550 T C SPEF2 Missense_Mutation p.L60P 0.16 deleterious(0) probably_damaging(0.983) TCGA-D7-A4Z0-01 5 37187931 37187931 T G C5orf42 Missense_Mutation p.E1275D 0.20 deleterious(0.03) probably_damaging(0.987) TCGA-D7-A4Z0-01 5 63257405 63257405 A C HTR1A Missense_Mutation p.F48V 0.14 tolerated(0.08) benign(0.055) TCGA-D7-A4Z0-01 5 76358896 76358896 G A AGGF1 Missense_Mutation p.R655Q 0.12 tolerated(0.38) benign(0.041) TCGA-D7-A4Z0-01 5 82815417 82815417 A C VCAN Missense_Mutation p.K431T 0.19 tolerated(0.26) benign(0.093) TCGA-D7-A4Z0-01 5 82815448 82815448 T G VCAN Silent p.P441P 0.20 TCGA-D7-A4Z0-01 5 82836092 82836092 T C VCAN Silent p.L2424L 0.15 TCGA-D7-A4Z0-01 5 82836790 82836790 T G VCAN Silent p.T2656T 0.11 TCGA-D7-A4Z0-01 5 9197384 9197384 A G SEMA5A Missense_Mutation p.F322L 0.17 deleterious(0) probably_damaging(0.997) TCGA-D7-A4Z0-01 6 10903119 10903119 T C SYCP2L Silent p.T188T 0.23 TCGA-D7-A4Z0-01 6 121412189 121412189 T G TBC1D32 Splice_Site p.X1156_splice 0.16 TCGA-D7-A4Z0-01 6 127767947 127767947 T C KIAA0408 Missense_Mutation p.E506G 0.15 deleterious(0.04) benign(0.033) TCGA-D7-A4Z0-01 6 153347643 153347643 G A RGS17 Missense_Mutation p.A52V 0.15 tolerated(0.18) benign(0.011) TCGA-D7-A4Z0-01 6 24291223 24291223 T G DCDC2 Missense_Mutation p.K214T 0.12 deleterious(0) probably_damaging(0.923) TCGA-D7-A4Z0-01 6 29080491 29080491 A C OR2J3 Missense_Mutation p.K275T 0.16 deleterious(0) probably_damaging(0.984) TCGA-D7-A4Z0-01 6 29231675 29231675 A C XXbac-BPG308J9.3 RNA 0.14 TCGA-D7-A4Z0-01 6 31627482 31627482 C T C6orf47 Silent p.E81E 0.16 TCGA-D7-A4Z0-01 6 6145969 6145969 T G F13A1 Missense_Mutation p.E694D 0.12 tolerated(0.1) benign(0.244) TCGA-D7-A4Z0-01 6 70745826 70745826 T G COL19A1 Missense_Mutation p.L389V 0.24 tolerated(0.13) unknown(0) TCGA-D7-A4Z0-01 6 99819343 99819343 A C COQ3 Missense_Mutation p.F284V 0.17 deleterious(0) probably_damaging(0.992) TCGA-D7-A4Z0-01 7 100853686 100853686 G A PLOD3 Missense_Mutation p.R514W 0.10 deleterious(0.01) benign(0.057) TCGA-D7-A4Z0-01 7 110526690 110526690 C G IMMP2L Missense_Mutation p.D123H 0.18 deleterious(0) probably_damaging(0.998) TCGA-D7-A4Z0-01 7 155537721 155537721 G A RBM33 Missense_Mutation p.E802K 0.31 deleterious(0) unknown(0) TCGA-D7-A4Z0-01 7 158695154 158695154 C A WDR60 Missense_Mutation p.P409T 0.13 deleterious(0.04) possibly_damaging(0.908) TCGA-D7-A4Z0-01 7 20685666 20685666 T C ABCB5 Missense_Mutation p.F296L 0.25 tolerated(1) benign(0.008) TCGA-D7-A4Z0-01 7 23292999 23292999 T G GPNMB Silent p.S48S 0.14 TCGA-D7-A4Z0-01 7 33397593 33397593 T G BBS9 Missense_Mutation p.L560R 0.13 tolerated(0.35) benign(0.009) TCGA-D7-A4Z0-01 7 42006192 42006192 G T GLI3 Missense_Mutation p.L827I 0.13 tolerated(0.16) benign(0.033) TCGA-D7-A4Z0-01 7 64389422 64389422 T C ZNF273 3'UTR 0.17 TCGA-D7-A4Z0-01 7 64439906 64439906 A G ZNF117 Missense_Mutation p.Y15H 0.26 deleterious(0.01) possibly_damaging(0.543) TCGA-D7-A4Z0-01 7 70597831 70597831 T G WBSCR17 Missense_Mutation p.L15V 0.19 tolerated_low_confidence(0.3) possibly_damaging(0.636) TCGA-D7-A4Z0-01 7 79082699 79082699 G A MAGI2 5'UTR 0.22 TCGA-D7-A4Z0-01 7 82544559 82544559 T G PCLO Missense_Mutation p.N4248T 0.12 unknown(0) TCGA-D7-A4Z0-01 7 82545733 82545733 T G PCLO Silent p.R3857R 0.18 TCGA-D7-A4Z0-01 7 94057067 94057068 - TATGA COL1A2 Frame_Shift_Ins p.E1134Dfs*8 0.11 TCGA-D7-A4Z0-01 8 103357767 103357767 A C UBR5 Missense_Mutation p.L248R 0.12 deleterious(0) probably_damaging(0.974) TCGA-D7-A4Z0-01 8 105436539 105436539 T C DPYS Missense_Mutation p.R391G 0.10 deleterious(0) benign(0.183) TCGA-D7-A4Z0-01 8 110100172 110100172 A T TRHR Missense_Mutation p.K144M 0.09 deleterious(0) possibly_damaging(0.842) TCGA-D7-A4Z0-01 8 110445390 110445390 T G PKHD1L1 Missense_Mutation p.S1095R 0.12 tolerated(0.09) benign(0.424) TCGA-D7-A4Z0-01 8 113304877 113304877 A G CSMD3 Missense_Mutation p.F2893L 0.08 tolerated(1) benign(0.023) TCGA-D7-A4Z0-01 8 113348960 113348960 T C CSMD3 Missense_Mutation p.R2314G 0.11 tolerated(0.1) benign(0.012) TCGA-D7-A4Z0-01 8 113933896 113933896 T A CSMD3 Missense_Mutation p.E531D 0.09 tolerated(1) possibly_damaging(0.557) TCGA-D7-A4Z0-01 8 116631822 116631822 T G TRPS1 Missense_Mutation p.K168T 0.13 deleterious_low_confidence(0.02) benign(0.102) TCGA-D7-A4Z0-01 8 122626941 122626941 T G HAS2 Missense_Mutation p.K356T 0.11 deleterious(0) probably_damaging(1) TCGA-D7-A4Z0-01 8 133912519 133912519 G A TG Missense_Mutation p.G1123D 0.20 tolerated(0.44) possibly_damaging(0.828) TCGA-D7-A4Z0-01 8 134477158 134477158 C T ST3GAL1 Silent p.G182G 0.14 TCGA-D7-A4Z0-01 8 139165017 139165017 T - FAM135B Frame_Shift_Del p.E567Dfs*21 0.14 TCGA-D7-A4Z0-01 8 13959935 13959935 A C SGCZ Missense_Mutation p.F232V 0.09 tolerated(0.22) benign(0.015) TCGA-D7-A4Z0-01 8 143956698 143956698 T A CYP11B1 Silent p.R384R 0.10 TCGA-D7-A4Z0-01 8 15480646 15480646 T A TUSC3 Missense_Mutation p.F66I 0.10 tolerated(1) benign(0) TCGA-D7-A4Z0-01 8 15605922 15605922 T C TUSC3 Missense_Mutation p.F326L 0.12 deleterious(0.02) benign(0.346) TCGA-D7-A4Z0-01 8 3265708 3265708 A C CSMD1 Missense_Mutation p.I595S 0.17 possibly_damaging(0.875) TCGA-D7-A4Z0-01 8 55537320 55537320 C G RP1 Missense_Mutation p.S293C 0.11 deleterious(0) benign(0.437) TCGA-D7-A4Z0-01 8 55542278 55542278 T A RP1 Missense_Mutation p.F1946I 0.14 tolerated(0.39) benign(0.008) TCGA-D7-A4Z0-01 8 69017601 69017601 T G PREX2 Intron 0.14 TCGA-D7-A4Z0-01 8 72951153 72951153 A G TRPA1 Missense_Mutation p.S748P 0.10 deleterious(0.03) probably_damaging(0.998) TCGA-D7-A4Z0-01 8 72965013 72965013 A C RP11-383H13.1 3'UTR 0.07 TCGA-D7-A4Z0-01 8 75924709 75924709 T A CRISPLD1 Silent p.A100A 0.06 TCGA-D7-A4Z0-01 8 88885921 88885921 T G DCAF4L2 Missense_Mutation p.E93D 0.11 tolerated(0.29) benign(0.008) TCGA-D7-A4Z0-01 8 89131066 89131066 A C MMP16 Missense_Mutation p.V245G 0.19 deleterious(0) probably_damaging(0.944) TCGA-D7-A4Z0-01 8 89339369 89339369 A C MMP16 Missense_Mutation p.L23V 0.13 tolerated(0.08) benign(0.002) TCGA-D7-A4Z0-01 8 92407400 92407400 T G SLC26A7 3'Flank 0.10 TCGA-D7-A4Z0-01 8 97797501 97797501 A C CPQ Silent p.R126R 0.11 TCGA-D7-A4Z0-01 9 104433163 104433163 T G GRIN3A Missense_Mutation p.S511R 0.29 tolerated(0.34) benign(0.003) TCGA-D7-A4Z0-01 9 113276307 113276307 G A SVEP1 Silent p.H348H 0.38 TCGA-D7-A4Z0-01 9 115142436 115142436 C G HSDL2 5'UTR 0.44 TCGA-D7-A4Z0-01 9 116191605 116191605 T G C9orf43 Missense_Mutation p.L442R 0.08 deleterious(0) probably_damaging(0.976) TCGA-D7-A4Z0-01 9 118164548 118164548 T C DEC1 3'UTR 0.33 TCGA-D7-A4Z0-01 9 121929578 121929578 C T BRINP1 Silent p.S690S 0.05 TCGA-D7-A4Z0-01 9 124751548 124751548 C T TTLL11 Missense_Mutation p.A489T 0.05 deleterious(0) probably_damaging(0.919) TCGA-D7-A4Z0-01 9 124751858 124751858 C G TTLL11 Missense_Mutation p.K385N 0.06 deleterious(0) probably_damaging(1) TCGA-D7-A4Z0-01 9 131117714 131117714 C A SLC27A4 Nonsense_Mutation p.Y500* 0.19 TCGA-D7-A4Z0-01 9 18776993 18776993 G A ADAMTSL1 Silent p.T922T 0.31 TCGA-D7-A4Z0-01 9 72783642 72783642 A T MAMDC2 Missense_Mutation p.S477C 0.29 deleterious(0) probably_damaging(0.941) TCGA-D7-A4Z0-01 9 8436611 8436611 T G PTPRD Missense_Mutation p.K1356T 0.36 deleterious(0) benign(0.122) TCGA-D7-A4Z0-01 X 101139416 101139416 T C ZMAT1 Missense_Mutation p.K328R 0.18 tolerated(0.2) benign(0.005) TCGA-D7-A4Z0-01 X 107331217 107331217 G A PSMD10 Missense_Mutation p.P109L 0.15 deleterious(0) probably_damaging(0.992) TCGA-D7-A4Z0-01 X 108785927 108785927 A C NXT2 3'UTR 0.07 TCGA-D7-A4Z0-01 X 110951264 110951264 T G ALG13 Silent p.T131T 0.18 TCGA-D7-A4Z0-01 X 111698541 111698541 A C ZCCHC16 Missense_Mutation p.E195D 0.16 tolerated(0.05) benign(0.09) TCGA-D7-A4Z0-01 X 114238661 114238661 T G IL13RA2 Missense_Mutation p.E375D 0.12 deleterious_low_confidence(0) benign(0) TCGA-D7-A4Z0-01 X 119068469 119068469 T G NKAP Missense_Mutation p.K242T 0.08 deleterious(0) unknown(0) TCGA-D7-A4Z0-01 X 122769999 122769999 A T THOC2 Missense_Mutation p.F650Y 0.23 tolerated(0.34) benign(0.034) TCGA-D7-A4Z0-01 X 123556129 123556129 A C TENM1 Missense_Mutation p.C1488W 0.20 deleterious(0) probably_damaging(0.999) TCGA-D7-A4Z0-01 X 135427928 135427928 A G GPR112 Missense_Mutation p.E688G 0.16 tolerated(1) benign(0) TCGA-D7-A4Z0-01 X 137717662 137717662 T G FGF13 Missense_Mutation p.K196T 0.21 deleterious(0.03) probably_damaging(0.986) TCGA-D7-A4Z0-01 X 138828012 138828012 T C ATP11C Missense_Mutation p.I948V 0.19 tolerated(0.29) benign(0.011) TCGA-D7-A4Z0-01 X 144906229 144906229 A G SLITRK2 Silent p.R762R 0.15 TCGA-D7-A4Z0-01 X 147011719 147011719 T G FMR1 Missense_Mutation p.L196V 0.13 tolerated(0.22) possibly_damaging(0.473) TCGA-D7-A4Z0-01 X 147744022 147744022 A T AFF2 Missense_Mutation p.L258F 0.15 deleterious(0.04) probably_damaging(0.996) TCGA-D7-A4Z0-01 X 148568741 148568741 T G IDS Intron 0.19 TCGA-D7-A4Z0-01 X 14913459 14913459 T G MOSPD2 Missense_Mutation p.L89V 0.13 tolerated(0.07) benign(0.072) TCGA-D7-A4Z0-01 X 150844474 150844474 A C PASD1 Missense_Mutation p.Q727H 0.16 tolerated(0.05) benign(0.387) TCGA-D7-A4Z0-01 X 150885864 150885864 A T FATE1 Missense_Mutation p.K76M 0.10 deleterious(0) probably_damaging(0.993) TCGA-D7-A4Z0-01 X 151304051 151304051 T G MAGEA10 Missense_Mutation p.E14D 0.16 tolerated(0.25) possibly_damaging(0.484) TCGA-D7-A4Z0-01 X 151393246 151393246 T C GABRA3 Missense_Mutation p.K208R 0.15 tolerated(0.12) probably_damaging(0.917) TCGA-D7-A4Z0-01 X 153666940 153666940 C T GDI1 Silent p.Y39Y 0.11 TCGA-D7-A4Z0-01 X 154507113 154507113 T C CLIC2 3'UTR 0.14 TCGA-D7-A4Z0-01 X 3240515 3240515 T G MXRA5 Missense_Mutation p.N1071H 0.15 tolerated(0.06) benign(0.087) TCGA-D7-A4Z0-01 X 45060041 45060041 C T CXorf36 Missense_Mutation p.A11T 0.22 tolerated_low_confidence(0.12) benign(0.002) TCGA-D7-A4Z0-01 X 47836329 47836329 T G ZNF182 Missense_Mutation p.K386T 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-D7-A4Z0-01 X 48559088 48559088 G A SUV39H1 Missense_Mutation p.V258I 0.10 deleterious(0.02) probably_damaging(0.926) TCGA-D7-A4Z0-01 X 50090646 50090646 A G CCNB3 Missense_Mutation p.T1278A 0.06 deleterious(0.01) probably_damaging(0.998) TCGA-D7-A4Z0-01 X 54037563 54037563 A G PHF8 Missense_Mutation p.I349T 0.19 deleterious(0) probably_damaging(1) TCGA-D7-A4Z0-01 X 54578117 54578117 A C GNL3L Missense_Mutation p.K327T 0.16 tolerated(0.46) benign(0.226) TCGA-D7-A4Z0-01 X 54783779 54783779 T C ITIH6 Missense_Mutation p.S910G 0.08 deleterious(0.05) benign(0.027) TCGA-D7-A4Z0-01 X 54783936 54783936 T G ITIH6 Missense_Mutation p.K857N 0.11 tolerated(0.11) benign(0.005) TCGA-D7-A4Z0-01 X 54951444 54951444 A G TRO Silent p.Q476Q 0.23 TCGA-D7-A4Z0-01 X 55033430 55033430 A G APEX2 Silent p.Q373Q 0.14 TCGA-D7-A4Z0-01 X 5821156 5821156 G A NLGN4X Silent p.A521A 0.13 TCGA-D7-A4Z0-01 X 6069148 6069148 C T NLGN4X Silent p.L120L 0.11 TCGA-D7-A4Z0-01 X 6069402 6069402 A C NLGN4X Missense_Mutation p.F36V 0.14 tolerated(0.7) benign(0.001) TCGA-D7-A4Z0-01 X 63411809 63411809 A G AMER1 Missense_Mutation p.L453P 0.11 deleterious(0) probably_damaging(0.953) TCGA-D7-A4Z0-01 X 68381908 68381908 T C PJA1 Missense_Mutation p.S392G 0.13 deleterious(0) possibly_damaging(0.858) TCGA-D7-A4Z0-01 X 70598122 70598122 A T TAF1 Missense_Mutation p.Q344L 0.13 tolerated(0.12) benign(0.209) TCGA-D7-A4Z0-01 X 77380399 77380399 A G PGK1 Missense_Mutation p.K322R 0.14 tolerated(0.08) benign(0.008) TCGA-D7-A4Z0-01 X 78216571 78216571 T C P2RY10 Missense_Mutation p.L185P 0.21 deleterious(0) possibly_damaging(0.775) TCGA-D7-A4Z0-01 X 85211343 85211343 T G CHM Missense_Mutation p.Q327H 0.14 deleterious(0.01) possibly_damaging(0.839) TCGA-D7-A4Z0-01 X 8763146 8763146 T G FAM9A Missense_Mutation p.E268D 0.18 tolerated_low_confidence(0.09) unknown(0) TCGA-D7-A4Z0-01 X 90691203 90691203 C T PABPC5 Silent p.D209D 0.18 TCGA-D7-A4Z0-01 X 99663303 99663303 T C PCDH19 Missense_Mutation p.K98R 0.15 deleterious(0.05) possibly_damaging(0.458) TCGA-D7-A6ET-01 10 118960783 118960783 G A KCNK18 Missense_Mutation p.V113M 0.11 deleterious(0) probably_damaging(0.999) TCGA-D7-A6ET-01 10 121674302 121674302 A G SEC23IP Missense_Mutation p.D458G 0.05 deleterious(0) probably_damaging(0.951) TCGA-D7-A6ET-01 10 29773703 29773703 A T SVIL Missense_Mutation p.L1613I 0.06 deleterious(0) probably_damaging(0.999) TCGA-D7-A6ET-01 11 108385484 108385484 G A EXPH5 Silent p.N250N 0.10 TCGA-D7-A6ET-01 12 107372096 107372096 T G MTERFD3 Missense_Mutation p.I133L 0.07 deleterious(0.01) possibly_damaging(0.678) TCGA-D7-A6ET-01 13 24895861 24895861 C T C1QTNF9 Silent p.D319D 0.05 TCGA-D7-A6ET-01 14 105206963 105206963 G A ADSSL1 Missense_Mutation p.G211R 0.05 deleterious(0) probably_damaging(1) TCGA-D7-A6ET-01 14 51477195 51477195 G A TRIM9 Silent p.I353I 0.06 TCGA-D7-A6ET-01 14 73721299 73721299 G A PAPLN Missense_Mutation p.A434T 0.04 tolerated(0.68) benign(0.002) TCGA-D7-A6ET-01 16 30002108 30002108 C T TAOK2 3'Flank 0.05 TCGA-D7-A6ET-01 17 53798077 53798077 G A TMEM100 Missense_Mutation p.R119W 0.05 deleterious(0.05) probably_damaging(0.997) TCGA-D7-A6ET-01 17 5462596 5462596 G A NLRP1 Missense_Mutation p.R474C 0.08 tolerated(0.31) benign(0.036) TCGA-D7-A6ET-01 18 22057102 22057102 C T HRH4 Missense_Mutation p.S250L 0.06 tolerated(0.1) benign(0.049) TCGA-D7-A6ET-01 18 24722744 24722744 G T CHST9 Silent p.P10P 0.05 TCGA-D7-A6ET-01 18 34380233 34380233 T A TPGS2 Missense_Mutation p.S142C 0.05 deleterious(0.02) benign(0.05) TCGA-D7-A6ET-01 19 35941517 35941517 C T FFAR2 Missense_Mutation p.R301C 0.05 tolerated(0.29) benign(0.003) TCGA-D7-A6ET-01 19 7810611 7810611 C G CD209 Missense_Mutation p.G181R 0.06 deleterious(0.01) benign(0.055) TCGA-D7-A6ET-01 1 210856611 210856611 T A KCNH1 3'UTR 0.05 TCGA-D7-A6ET-01 1 28595728 28595728 G A SESN2 Missense_Mutation p.R42Q 0.05 tolerated(0.17) probably_damaging(0.932) TCGA-D7-A6ET-01 1 46657847 46657847 G A POMGNT1 Nonsense_Mutation p.R488* 0.12 TCGA-D7-A6ET-01 20 23614458 23614458 C T CST3 Intron 0.16 TCGA-D7-A6ET-01 20 35399587 35399587 G A DSN1 Missense_Mutation p.P15L 0.04 deleterious_low_confidence(0.01) benign(0.282) TCGA-D7-A6ET-01 2 209025555 209025555 A T CRYGA Silent p.S166S 0.07 TCGA-D7-A6ET-01 2 218669196 218669196 C T TNS1 Missense_Mutation p.G1732S 0.06 tolerated(0.68) benign(0.039) TCGA-D7-A6ET-01 3 169637347 169637347 C T SAMD7 Missense_Mutation p.P21S 0.06 tolerated(0.12) benign(0.109) TCGA-D7-A6ET-01 3 186943167 186943167 T C MASP1 Silent p.P562P 0.09 TCGA-D7-A6ET-01 6 28543000 28543000 G A SCAND3 Silent p.H494H 0.05 TCGA-D7-A6ET-01 6 31238153 31238153 C T HLA-C Silent p.R243R 0.05 TCGA-D7-A6ET-01 8 73849388 73849388 A T KCNB2 Missense_Mutation p.T600S 0.06 tolerated_low_confidence(0.42) benign(0.016) TCGA-D7-A6ET-01 9 138454248 138454248 G A PAEP Missense_Mutation p.E69K 0.05 tolerated(0.09) probably_damaging(0.941) TCGA-D7-A6ET-01 X 144337534 144337534 C A SPANXN1 3'UTR 0.09 TCGA-D7-A6ET-01 X 39932987 39932987 G A BCOR Nonsense_Mutation p.Q538* 0.13 TCGA-D7-A6ET-01 X 48419180 48419180 G A TBC1D25 Silent p.E628E 0.09 TCGA-D7-A6ET-01 X 55290278 55290278 G C PAGE3 Missense_Mutation p.S20C 0.09 deleterious(0.05) probably_damaging(0.963) TCGA-D7-A6EV-01 10 108431013 108431013 G C SORCS1 Missense_Mutation p.T724S 0.46 tolerated(0.27) benign(0.09) TCGA-D7-A6EV-01 10 134563059 134563059 C T INPP5A Silent p.A257A 0.19 TCGA-D7-A6EV-01 10 30736750 30736750 G A MAP3K8 Missense_Mutation p.D126N 0.12 deleterious(0.02) probably_damaging(0.998) TCGA-D7-A6EV-01 10 75871828 75871828 G A VCL Silent p.A969A 0.10 TCGA-D7-A6EV-01 10 78943183 78943183 C A KCNMA1 Missense_Mutation p.W268C 0.11 deleterious(0.03) probably_damaging(0.986) TCGA-D7-A6EV-01 11 1088003 1088003 C A MUC2 Missense_Mutation p.L1160M 0.41 probably_damaging(0.996) TCGA-D7-A6EV-01 11 113686013 113686013 G A USP28 Missense_Mutation p.R519W 0.20 deleterious(0) possibly_damaging(0.579) TCGA-D7-A6EV-01 11 120996089 120996089 G C TECTA Missense_Mutation p.A428P 0.19 deleterious(0.01) probably_damaging(0.978) TCGA-D7-A6EV-01 11 123894108 123894108 G C OR10G9 Missense_Mutation p.R130T 0.17 deleterious(0) possibly_damaging(0.493) TCGA-D7-A6EV-01 11 130332450 130332450 C T ADAMTS15 Silent p.G439G 0.21 TCGA-D7-A6EV-01 11 132527171 132527171 G A OPCML Missense_Mutation p.R71C 0.42 deleterious(0) probably_damaging(1) TCGA-D7-A6EV-01 11 33566811 33566811 G A KIAA1549L Missense_Mutation p.R794Q 0.24 tolerated(0.58) benign(0.001) TCGA-D7-A6EV-01 11 46563752 46563752 G A AMBRA1 Silent p.S515S 0.50 TCGA-D7-A6EV-01 11 46819477 46819477 C T CKAP5 Missense_Mutation p.D406N 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-D7-A6EV-01 11 5510028 5510028 C T OR52D1 Missense_Mutation p.A31V 0.08 deleterious(0.02) benign(0.016) TCGA-D7-A6EV-01 11 55606243 55606243 A G OR5D16 Missense_Mutation p.R6G 0.33 tolerated(0.69) benign(0.005) TCGA-D7-A6EV-01 11 56020077 56020077 T C OR5T3 Silent p.F134F 0.16 TCGA-D7-A6EV-01 11 65744004 65744004 C T SART1 Silent p.L571L 0.08 TCGA-D7-A6EV-01 11 67399790 67399790 T G TBX10 Missense_Mutation p.K289N 0.06 tolerated(0.07) benign(0.394) TCGA-D7-A6EV-01 11 76371463 76371463 G A LRRC32 Missense_Mutation p.L392F 0.05 tolerated(0.39) benign(0.013) TCGA-D7-A6EV-01 11 78423707 78423707 C T TENM4 Missense_Mutation p.V1292I 0.84 tolerated(0.05) benign(0.001) TCGA-D7-A6EV-01 11 92088136 92088136 C A FAT3 Missense_Mutation p.T953N 0.15 probably_damaging(0.976) TCGA-D7-A6EV-01 11 93464141 93464144 AATC - KIAA1731 3'Flank 0.08 TCGA-D7-A6EV-01 12 118511512 118511512 C G VSIG10 Missense_Mutation p.S404T 0.06 tolerated(1) benign(0.01) TCGA-D7-A6EV-01 12 122294267 122294267 A G HPD Missense_Mutation p.I96T 0.09 deleterious(0) possibly_damaging(0.738) TCGA-D7-A6EV-01 12 3126664 3126664 G A TEAD4 Missense_Mutation p.R152Q 0.28 tolerated(0.68) benign(0.162) TCGA-D7-A6EV-01 12 53185088 53185088 C T KRT3 Silent p.A479A 0.34 TCGA-D7-A6EV-01 12 6882468 6882468 C T LAG3 Nonsense_Mutation p.R57* 0.21 TCGA-D7-A6EV-01 12 7045535 7045535 C - ATN1 Frame_Shift_Del p.M371* 0.08 TCGA-D7-A6EV-01 12 81205402 81205402 C T LIN7A Missense_Mutation p.V182I 0.15 tolerated(0.08) benign(0.005) TCGA-D7-A6EV-01 12 91502281 91502281 A C LUM Missense_Mutation p.V159G 0.28 tolerated(0.34) benign(0.102) TCGA-D7-A6EV-01 13 100617777 100617777 G C ZIC5 Missense_Mutation p.Q616E 0.09 tolerated(0.07) possibly_damaging(0.522) TCGA-D7-A6EV-01 13 100622789 100622789 C T ZIC5 Missense_Mutation p.A381T 0.22 tolerated(0.14) unknown(0) TCGA-D7-A6EV-01 13 102367976 102367976 A G ITGBL1 Missense_Mutation p.E486G 0.06 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-D7-A6EV-01 13 39448679 39448679 A G FREM2 Missense_Mutation p.K2746R 0.06 tolerated(0.64) benign(0.002) TCGA-D7-A6EV-01 13 46554082 46554082 T G ZC3H13 Missense_Mutation p.H593P 0.18 probably_damaging(0.993) TCGA-D7-A6EV-01 13 53624273 53624273 G A OLFM4 Silent p.L300L 0.10 TCGA-D7-A6EV-01 13 97485336 97485336 C T HS6ST3 Missense_Mutation p.R434W 0.30 deleterious(0) probably_damaging(0.986) TCGA-D7-A6EV-01 13 98009766 98009766 C T MBNL2 Missense_Mutation p.P279S 0.50 deleterious(0.01) probably_damaging(0.923) TCGA-D7-A6EV-01 14 20296283 20296283 C T OR4N2 Nonsense_Mutation p.R226* 0.14 TCGA-D7-A6EV-01 14 78023404 78023404 G C SPTLC2 Missense_Mutation p.I312M 0.07 deleterious(0) probably_damaging(0.998) TCGA-D7-A6EV-01 15 22382535 22382535 A C OR4N4 Missense_Mutation p.Q21H 0.25 tolerated(0.42) benign(0.002) TCGA-D7-A6EV-01 15 22382668 22382668 T G OR4N4 Missense_Mutation p.L66V 0.09 deleterious(0) probably_damaging(0.997) TCGA-D7-A6EV-01 15 31776696 31776696 G T OTUD7A Missense_Mutation p.L528M 0.29 deleterious(0) probably_damaging(0.997) TCGA-D7-A6EV-01 15 44094030 44094030 T C HYPK 3'UTR 0.26 TCGA-D7-A6EV-01 15 45400422 45400422 T C DUOX2 Splice_Site p.X467_splice 0.08 TCGA-D7-A6EV-01 15 65313926 65313926 C G MTFMT Missense_Mutation p.E191Q 0.15 tolerated(0.08) possibly_damaging(0.531) TCGA-D7-A6EV-01 15 68582280 68582280 C T FEM1B Missense_Mutation p.A195V 0.42 deleterious(0) probably_damaging(0.998) TCGA-D7-A6EV-01 15 93557943 93557943 C G CHD2 Missense_Mutation p.D1570E 0.16 tolerated(0.87) benign(0.002) TCGA-D7-A6EV-01 15 99696476 99696476 G A TTC23 Silent p.S340S 0.25 TCGA-D7-A6EV-01 16 29916255 29916255 C T ASPHD1 Silent p.D344D 0.08 TCGA-D7-A6EV-01 16 31368360 31368360 G T ITGAX Nonsense_Mutation p.E86* 0.19 TCGA-D7-A6EV-01 16 48382148 48382148 C T LONP2 Missense_Mutation p.R762C 0.19 deleterious(0.03) benign(0.01) TCGA-D7-A6EV-01 16 4942154 4942154 C T PPL Missense_Mutation p.E571K 0.10 tolerated(0.1) benign(0.003) TCGA-D7-A6EV-01 16 57760171 57760171 G A CCDC135 Silent p.T650T 0.07 TCGA-D7-A6EV-01 16 69350022 69350022 T C VPS4A Missense_Mutation p.Y45H 0.08 deleterious(0.02) benign(0.114) TCGA-D7-A6EV-01 16 69968021 69968021 T C WWP2 Missense_Mutation p.F611L 0.20 deleterious(0.01) probably_damaging(0.997) TCGA-D7-A6EV-01 16 8738515 8738515 G A METTL22 Missense_Mutation p.R371H 0.15 tolerated(0.09) possibly_damaging(0.858) TCGA-D7-A6EV-01 16 89800360 89800360 G A ZNF276 Missense_Mutation p.R463Q 0.08 deleterious(0) probably_damaging(0.997) TCGA-D7-A6EV-01 17 2203106 2203106 C G SMG6 Missense_Mutation p.G314A 0.09 tolerated_low_confidence(0.68) benign(0) TCGA-D7-A6EV-01 17 26875115 26875115 C G UNC119 Silent p.R113R 0.30 TCGA-D7-A6EV-01 17 29664575 29664575 C G NF1 Missense_Mutation p.T2206R 0.50 deleterious(0) probably_damaging(0.986) TCGA-D7-A6EV-01 17 42636437 42636437 C T FZD2 Missense_Mutation p.R461C 0.10 deleterious(0) probably_damaging(1) TCGA-D7-A6EV-01 17 49350769 49350769 T C UTP18 Silent p.N223N 0.22 TCGA-D7-A6EV-01 17 7077306 7077306 G A ASGR1 Silent p.D225D 0.61 TCGA-D7-A6EV-01 17 72368021 72368021 G A GPR142 Missense_Mutation p.R224H 0.67 tolerated(0.07) probably_damaging(0.909) TCGA-D7-A6EV-01 17 74569351 74569351 G A ST6GALNAC2 Silent p.A152A 0.38 TCGA-D7-A6EV-01 17 7578395 7578395 G T TP53 Missense_Mutation p.H179N 0.55 deleterious(0) probably_damaging(1) TCGA-D7-A6EV-01 18 47809061 47809061 C T CXXC1 Missense_Mutation p.A629T 0.22 tolerated(0.09) probably_damaging(0.99) TCGA-D7-A6EV-01 18 48604690 48604690 T G SMAD4 Missense_Mutation p.S504R 0.15 deleterious(0) probably_damaging(0.989) TCGA-D7-A6EV-01 19 15230059 15230059 C - ILVBL Frame_Shift_Del p.L324Cfs*2 0.08 TCGA-D7-A6EV-01 19 3025051 3025051 G C TLE2 Missense_Mutation p.I87M 0.40 deleterious(0) probably_damaging(0.998) TCGA-D7-A6EV-01 19 3192527 3192527 C T NCLN Missense_Mutation p.R82C 0.22 deleterious(0) probably_damaging(0.98) TCGA-D7-A6EV-01 19 3905589 3905589 C T ATCAY Silent p.I98I 0.63 TCGA-D7-A6EV-01 19 39961098 39961098 G A SUPT5H Missense_Mutation p.E538K 0.28 deleterious(0) benign(0.29) TCGA-D7-A6EV-01 19 39963888 39963888 G A SUPT5H Silent p.T768T 0.11 TCGA-D7-A6EV-01 19 42730555 42730555 C T ZNF526 Missense_Mutation p.T667M 0.25 deleterious_low_confidence(0) possibly_damaging(0.664) TCGA-D7-A6EV-01 19 46915631 46915631 C T CCDC8 Missense_Mutation p.S146N 0.16 probably_damaging(0.976) TCGA-D7-A6EV-01 19 47424159 47424159 G A ARHGAP35 Missense_Mutation p.G743R 0.48 tolerated(0.09) probably_damaging(1) TCGA-D7-A6EV-01 19 48946588 48946588 C T GRIN2D Silent p.A1135A 0.64 TCGA-D7-A6EV-01 19 48956330 48956330 G A GRWD1 3'UTR 0.16 TCGA-D7-A6EV-01 19 49303279 49303279 C T BCAT2 Missense_Mutation p.G164S 0.49 tolerated(0.88) benign(0.003) TCGA-D7-A6EV-01 19 49363621 49363621 C T PLEKHA4 Silent p.A154A 0.06 TCGA-D7-A6EV-01 19 50747567 50747567 G A MYH14 Missense_Mutation p.D395N 0.31 deleterious(0) possibly_damaging(0.622) TCGA-D7-A6EV-01 19 51581384 51581384 T C KLK14 Silent p.G228G 0.11 TCGA-D7-A6EV-01 19 52090760 52090760 A T ZNF175 Missense_Mutation p.E392D 0.16 tolerated(0.09) possibly_damaging(0.766) TCGA-D7-A6EV-01 19 5587142 5587142 C T SAFB2 3'UTR 0.15 TCGA-D7-A6EV-01 19 58439374 58439374 T A ZNF418 Nonsense_Mutation p.K59* 0.19 TCGA-D7-A6EV-01 19 8376455 8376455 C T NDUFA7 Silent p.K92K 0.19 TCGA-D7-A6EV-01 19 9056410 9056410 G T MUC16 Missense_Mutation p.P10346T 0.32 benign(0.007) TCGA-D7-A6EV-01 1 111724892 111724892 C T CEPT1 Silent p.F266F 0.55 TCGA-D7-A6EV-01 1 1153080 1153080 C T SDF4 Intron 0.06 TCGA-D7-A6EV-01 1 12979899 12979899 A T PRAMEF7 Missense_Mutation p.Q364L 0.24 probably_damaging(0.995) TCGA-D7-A6EV-01 1 152784825 152784825 G A LCE1B 5'UTR 0.71 TCGA-D7-A6EV-01 1 15959937 15959937 A C DDI2 Missense_Mutation p.K170T 0.22 tolerated(0.76) benign(0.002) TCGA-D7-A6EV-01 1 160261191 160261191 G A COPA Silent p.F1127F 0.09 TCGA-D7-A6EV-01 1 160771608 160771608 C T LY9 Intron 0.14 TCGA-D7-A6EV-01 1 161019053 161019053 G - ARHGAP30 Frame_Shift_Del p.S587Afs*24 0.12 TCGA-D7-A6EV-01 1 16269159 16269159 T C ZBTB17 Missense_Mutation p.T635A 0.06 deleterious(0.02) probably_damaging(0.952) TCGA-D7-A6EV-01 1 197316519 197316519 A T CRB1 Missense_Mutation p.T300S 0.05 tolerated(0.09) benign(0.045) TCGA-D7-A6EV-01 1 197397015 197397015 G C CRB1 Missense_Mutation p.D854H 0.23 deleterious(0) probably_damaging(1) TCGA-D7-A6EV-01 1 19983476 19983476 G A MINOS1-NBL1 Missense_Mutation p.V134I 0.33 tolerated_low_confidence(0.18) benign(0.136) TCGA-D7-A6EV-01 1 205156703 205156703 G A DSTYK Missense_Mutation p.A166V 0.36 tolerated(0.28) benign(0.011) TCGA-D7-A6EV-01 1 212538673 212538673 C T TMEM206 Missense_Mutation p.A374T 0.17 deleterious(0.04) probably_damaging(0.923) TCGA-D7-A6EV-01 1 237044081 237044081 C T MTR Missense_Mutation p.P874L 0.43 deleterious(0) probably_damaging(1) TCGA-D7-A6EV-01 1 75038061 75038061 A T C1orf173 Silent p.A1111A 0.05 TCGA-D7-A6EV-01 20 17641141 17641141 G A RRBP1 Silent p.Y4Y 0.08 TCGA-D7-A6EV-01 20 45905114 45905114 G A ZMYND8 Missense_Mutation p.T475M 0.08 deleterious_low_confidence(0.05) benign(0.024) TCGA-D7-A6EV-01 20 5081451 5081451 C G TMEM230 Missense_Mutation p.D180H 0.12 deleterious(0) probably_damaging(0.971) TCGA-D7-A6EV-01 20 57019334 57019334 C T VAPB 3'UTR 0.20 TCGA-D7-A6EV-01 20 62641597 62641597 G A PRPF6 Missense_Mutation p.V411I 0.14 tolerated(0.15) benign(0.348) TCGA-D7-A6EV-01 21 31874233 31874233 C T KRTAP19-5 Missense_Mutation p.R59H 0.10 tolerated_low_confidence(0.4) unknown(0) TCGA-D7-A6EV-01 21 46841474 46841474 A C COL18A1-AS1 RNA 0.12 TCGA-D7-A6EV-01 21 47549115 47549115 C G COL6A2 Intron 0.10 TCGA-D7-A6EV-01 22 21800189 21800191 GAA - HIC2 In_Frame_Del p.K337del 0.17 TCGA-D7-A6EV-01 22 29708283 29708283 C T GAS2L1 3'Flank 0.21 TCGA-D7-A6EV-01 22 35785935 35785935 C T HMOX1 Missense_Mutation p.R239W 0.31 deleterious(0.01) probably_damaging(0.972) TCGA-D7-A6EV-01 22 36680483 36680484 - CATC MYH9 Nonsense_Mutation p.D1853Gfs*2 0.40 TCGA-D7-A6EV-01 22 41253175 41253176 GT - XPNPEP3 5'UTR 0.32 TCGA-D7-A6EV-01 22 44892765 44892765 G A LDOC1L Silent p.N224N 0.21 TCGA-D7-A6EV-01 22 50647110 50647110 G A SELO Missense_Mutation p.D302N 0.62 tolerated(0.41) benign(0.031) TCGA-D7-A6EV-01 2 107423073 107423073 T A ST6GAL2 3'UTR 0.27 TCGA-D7-A6EV-01 2 11750852 11750852 T C GREB1 Missense_Mutation p.V902A 0.08 deleterious(0.03) probably_damaging(0.952) TCGA-D7-A6EV-01 2 128250857 128250857 C A IWS1 Missense_Mutation p.E643D 0.27 tolerated(0.15) benign(0.238) TCGA-D7-A6EV-01 2 130738474 130738474 A - RAB6C 3'UTR 0.15 TCGA-D7-A6EV-01 2 135738887 135738887 A G MAP3K19 Missense_Mutation p.F1142L 0.08 deleterious(0.02) probably_damaging(0.973) TCGA-D7-A6EV-01 2 136581480 136581480 G T LCT Missense_Mutation p.L300I 0.14 tolerated(0.44) benign(0.009) TCGA-D7-A6EV-01 2 141986942 141986942 A T LRP1B Missense_Mutation p.N220K 0.11 benign(0.403) TCGA-D7-A6EV-01 2 173830358 173830358 C T RAPGEF4 Missense_Mutation p.T256I 0.07 tolerated(0.23) benign(0.011) TCGA-D7-A6EV-01 2 179456368 179456368 G C TTN Missense_Mutation p.L20060V 0.04 TCGA-D7-A6EV-01 2 179542889 179542889 T C TTN Silent p.T11319T 0.05 TCGA-D7-A6EV-01 2 179569437 179569437 A G TTN Missense_Mutation p.I9921T 0.18 TCGA-D7-A6EV-01 2 179604151 179604151 C T TTN Silent p.E4603E 0.15 TCGA-D7-A6EV-01 2 196825170 196825170 T A DNAH7 Missense_Mutation p.E902V 0.30 deleterious(0) probably_damaging(0.999) TCGA-D7-A6EV-01 2 21231486 21231486 C A APOB Missense_Mutation p.V2752L 0.22 benign(0.022) TCGA-D7-A6EV-01 2 227661352 227661352 G A IRS1 Silent p.N701N 0.17 TCGA-D7-A6EV-01 2 28004516 28004516 G T RBKS Missense_Mutation p.P312H 0.08 deleterious(0) probably_damaging(0.996) TCGA-D7-A6EV-01 2 71796969 71796969 G A DYSF Missense_Mutation p.A962T 0.25 tolerated(0.09) possibly_damaging(0.53) TCGA-D7-A6EV-01 2 73829377 73829377 G A ALMS1 Silent p.K4059K 0.29 TCGA-D7-A6EV-01 2 80529332 80529332 C T LRRTM1 3'UTR 0.14 TCGA-D7-A6EV-01 3 119534625 119534625 C T NR1I2 Silent p.F408F 0.27 TCGA-D7-A6EV-01 3 133337188 133337188 C G TOPBP1 Missense_Mutation p.R1154T 0.10 deleterious(0) probably_damaging(0.978) TCGA-D7-A6EV-01 3 14724179 14724179 T G C3orf20 5'UTR 0.07 TCGA-D7-A6EV-01 3 150911453 150911453 G A MED12L Silent p.L715L 0.10 TCGA-D7-A6EV-01 3 171410122 171410122 C T PLD1 Silent p.K446K 0.12 TCGA-D7-A6EV-01 3 187388055 187388055 C T SST Missense_Mutation p.A9T 0.33 tolerated(0.4) possibly_damaging(0.464) TCGA-D7-A6EV-01 3 196746374 196746374 T C MFI2 Intron 0.16 TCGA-D7-A6EV-01 3 27760377 27760377 A T EOMES Missense_Mutation p.V389D 0.07 deleterious(0) probably_damaging(0.999) TCGA-D7-A6EV-01 3 35758821 35758821 G C ARPP21 Missense_Mutation p.E289Q 0.15 deleterious(0.04) benign(0.017) TCGA-D7-A6EV-01 3 38740047 38740047 A T SCN10A Missense_Mutation p.I1555N 0.05 tolerated(0.06) possibly_damaging(0.633) TCGA-D7-A6EV-01 3 49742579 49742579 C T RNF123 Missense_Mutation p.R708C 0.29 deleterious(0.01) possibly_damaging(0.724) TCGA-D7-A6EV-01 3 51430426 51430426 G A RBM15B Silent p.T532T 0.06 TCGA-D7-A6EV-01 3 9990327 9990327 A C PRRT3 Intron 0.16 TCGA-D7-A6EV-01 4 140375544 140375544 G T RAB33B Silent p.T65T 0.15 TCGA-D7-A6EV-01 4 17832636 17832636 T G NCAPG Missense_Mutation p.I594R 0.13 tolerated(0.05) benign(0.18) TCGA-D7-A6EV-01 4 1953858 1953858 C G WHSC1 Silent p.L679L 0.17 TCGA-D7-A6EV-01 4 25677886 25677886 G A SLC34A2 Missense_Mutation p.V530I 0.13 tolerated(0.7) benign(0.008) TCGA-D7-A6EV-01 4 5624672 5624672 C G EVC2 Missense_Mutation p.R698P 0.09 deleterious(0.02) benign(0.286) TCGA-D7-A6EV-01 4 677102 677102 C T MFSD7 Missense_Mutation p.G350R 0.56 deleterious(0) probably_damaging(1) TCGA-D7-A6EV-01 4 8394125 8394125 G A ACOX3 Missense_Mutation p.S412L 0.08 deleterious(0) possibly_damaging(0.46) TCGA-D7-A6EV-01 5 140248894 140248894 A G PCDHA11 Missense_Mutation p.K69R 0.37 tolerated_low_confidence(0.07) benign(0.044) TCGA-D7-A6EV-01 5 140503014 140503014 C A PCDHB4 Missense_Mutation p.D478E 0.06 deleterious(0) probably_damaging(0.993) TCGA-D7-A6EV-01 5 140532152 140532152 T G PCDHB6 Missense_Mutation p.F772V 0.17 tolerated_low_confidence(0.13) benign(0.007) TCGA-D7-A6EV-01 5 169435576 169435576 G A DOCK2 Missense_Mutation p.A1050T 0.53 tolerated(0.44) benign(0.024) TCGA-D7-A6EV-01 5 176882106 176882106 G T PRR7 Missense_Mutation p.C13F 0.29 deleterious(0) benign(0.126) TCGA-D7-A6EV-01 5 179541481 179541481 C T RASGEF1C Missense_Mutation p.A382T 0.17 tolerated(0.39) benign(0.187) TCGA-D7-A6EV-01 5 65350294 65350294 C G ERBB2IP Missense_Mutation p.P1050A 0.30 tolerated(0.09) benign(0.089) TCGA-D7-A6EV-01 5 677912 677912 G C TPPP Silent p.G88G 0.14 TCGA-D7-A6EV-01 5 70835476 70835476 G A BDP1 Missense_Mutation p.V2008I 0.25 tolerated(0.12) benign(0.032) TCGA-D7-A6EV-01 5 76028910 76028910 C T F2R Missense_Mutation p.T287M 0.14 deleterious(0.02) benign(0.298) TCGA-D7-A6EV-01 5 78746929 78746929 T C HOMER1 Missense_Mutation p.T60A 0.13 deleterious(0) possibly_damaging(0.532) TCGA-D7-A6EV-01 6 108068008 108068008 G A SCML4 Silent p.P124P 0.12 TCGA-D7-A6EV-01 6 112512954 112512954 T C LAMA4 Missense_Mutation p.D201G 0.19 tolerated(0.09) probably_damaging(1) TCGA-D7-A6EV-01 6 146673402 146673402 A C GRM1 Missense_Mutation p.E401D 0.06 tolerated(0.3) benign(0.065) TCGA-D7-A6EV-01 6 154360878 154360878 A G OPRM1 Missense_Mutation p.M160V 0.09 tolerated(0.28) benign(0.003) TCGA-D7-A6EV-01 6 26468672 26468672 G T BTN2A1 Missense_Mutation p.E493D 0.06 tolerated(1) benign(0.001) TCGA-D7-A6EV-01 6 28121105 28121105 C T ZKSCAN8 Silent p.P349P 0.34 TCGA-D7-A6EV-01 6 38881725 38881725 C G DNAH8 Missense_Mutation p.D3103E 0.11 possibly_damaging(0.79) TCGA-D7-A6EV-01 6 39162019 39162019 C A KCNK5 Missense_Mutation p.G187V 0.17 deleterious(0) possibly_damaging(0.632) TCGA-D7-A6EV-01 6 40400076 40400076 G A LRFN2 Silent p.D259D 0.27 TCGA-D7-A6EV-01 6 44219501 44219501 C T HSP90AB1 Missense_Mutation p.R448C 0.05 deleterious(0) probably_damaging(0.999) TCGA-D7-A6EV-01 7 100683865 100683865 G A MUC17 Silent p.T3056T 0.14 TCGA-D7-A6EV-01 7 137531284 137531284 C T DGKI Missense_Mutation p.A109T 0.20 tolerated_low_confidence(0.38) unknown(0) TCGA-D7-A6EV-01 7 19184648 19184648 C T FERD3L Missense_Mutation p.R113Q 0.62 deleterious(0) probably_damaging(1) TCGA-D7-A6EV-01 7 43581480 43581480 G C HECW1 Missense_Mutation p.L1377F 0.32 deleterious(0) probably_damaging(0.981) TCGA-D7-A6EV-01 7 57528738 57528738 G A ZNF716 Missense_Mutation p.G191S 0.33 tolerated(0.07) possibly_damaging(0.884) TCGA-D7-A6EV-01 7 72892862 72892862 G C BAZ1B Missense_Mutation p.T310S 0.33 tolerated(0.53) benign(0) TCGA-D7-A6EV-01 7 87225100 87225103 AGTT - ABCB1 Frame_Shift_Del p.T33Sfs*35 0.19 TCGA-D7-A6EV-01 8 104342150 104342150 C T FZD6 Silent p.D603D 0.19 TCGA-D7-A6EV-01 8 10555407 10555407 C T C8orf74 Silent p.A180A 0.19 TCGA-D7-A6EV-01 8 108334260 108334260 A G ANGPT1 Silent p.T224T 0.07 TCGA-D7-A6EV-01 8 113668544 113668544 A C CSMD3 Missense_Mutation p.V948G 0.20 tolerated(0.11) probably_damaging(0.959) TCGA-D7-A6EV-01 8 121292216 121292216 C T COL14A1 Missense_Mutation p.S1175L 0.09 tolerated(0.19) benign(0.407) TCGA-D7-A6EV-01 8 131916177 131916177 A C ADCY8 Silent p.T584T 0.10 TCGA-D7-A6EV-01 8 133881991 133881991 A C TG Missense_Mutation p.N65T 0.09 tolerated(0.46) benign(0.345) TCGA-D7-A6EV-01 8 139153550 139153550 G A FAM135B Silent p.V1227V 0.08 TCGA-D7-A6EV-01 8 139164840 139164840 C T FAM135B Silent p.G626G 0.08 TCGA-D7-A6EV-01 8 144803821 144803821 C T MAPK15 Missense_Mutation p.A436V 0.04 tolerated(0.24) benign(0.006) TCGA-D7-A6EV-01 8 144810212 144810212 G A FAM83H Silent p.F473F 0.18 TCGA-D7-A6EV-01 8 15605922 15605922 T G TUSC3 Missense_Mutation p.F326V 0.06 deleterious(0.02) possibly_damaging(0.734) TCGA-D7-A6EV-01 8 16026119 16026119 T G MSR1 Missense_Mutation p.S160R 0.06 tolerated(0.26) benign(0.042) TCGA-D7-A6EV-01 8 22548006 22548006 C T EGR3 Missense_Mutation p.V382M 0.10 tolerated_low_confidence(0.09) possibly_damaging(0.623) TCGA-D7-A6EV-01 8 24813063 24813063 G A CTD-2168K21.2 5'Flank 0.45 TCGA-D7-A6EV-01 8 25899686 25899686 C T EBF2 Silent p.L71L 0.06 TCGA-D7-A6EV-01 9 105767641 105767641 A C CYLC2 Missense_Mutation p.K243T 0.14 deleterious(0) unknown(0) TCGA-D7-A6EV-01 9 121929771 121929771 G T BRINP1 Missense_Mutation p.P626H 0.05 tolerated(0.12) probably_damaging(0.99) TCGA-D7-A6EV-01 9 130829338 130829338 G A NAIF1 Missense_Mutation p.R15W 0.08 deleterious(0) probably_damaging(0.966) TCGA-D7-A6EV-01 9 136337238 136337238 C T SLC2A6 Missense_Mutation p.V477M 0.09 deleterious(0.04) benign(0.145) TCGA-D7-A6EV-01 9 21384858 21384861 TTTC - IFNA2 Frame_Shift_Del p.K156Nfs*15 0.28 TCGA-D7-A6EV-01 9 27950415 27950415 C A LINGO2 Missense_Mutation p.E85D 0.27 tolerated(0.35) benign(0.002) TCGA-D7-A6EV-01 9 95491355 95491355 G A BICD2 Missense_Mutation p.T135M 0.11 deleterious(0.01) possibly_damaging(0.537) TCGA-D7-A6EV-01 X 108708371 108708371 T C GUCY2F Silent p.Q344Q 0.49 TCGA-D7-A6EV-01 X 140335633 140335633 A G SPANXC 3'UTR 0.36 TCGA-D7-A6EV-01 X 142596578 142596578 T C SPANXN3 3'UTR 0.23 TCGA-D7-A6EX-01 10 104176767 104176767 G A PSD Missense_Mutation p.S10L 0.16 deleterious_low_confidence(0.01) probably_damaging(0.968) TCGA-D7-A6EX-01 10 120354644 120354644 G A PRLHR Missense_Mutation p.S38L 0.52 tolerated(0.17) benign(0) TCGA-D7-A6EX-01 10 16893327 16893327 A C CUBN Missense_Mutation p.I3190M 0.18 tolerated(0.09) possibly_damaging(0.756) TCGA-D7-A6EX-01 10 26506587 26506587 A C GAD2 Missense_Mutation p.N42T 0.23 tolerated_low_confidence(1) benign(0.001) TCGA-D7-A6EX-01 10 27382637 27382637 C T ANKRD26 Missense_Mutation p.E112K 0.17 deleterious(0.01) benign(0.101) TCGA-D7-A6EX-01 10 5772730 5772730 T G FAM208B Silent p.S256S 0.22 TCGA-D7-A6EX-01 10 69366706 69366706 C A CTNNA3 Missense_Mutation p.W67C 0.16 tolerated(0.06) probably_damaging(0.926) TCGA-D7-A6EX-01 10 77158912 77158912 G A ZNF503 Silent p.L512L 0.13 TCGA-D7-A6EX-01 10 85981706 85981706 C A LRIT2 Missense_Mutation p.K541N 0.15 tolerated(0.23) benign(0.037) TCGA-D7-A6EX-01 11 117391949 117391949 G A DSCAML1 Missense_Mutation p.T430M 0.26 tolerated(0.06) probably_damaging(0.975) TCGA-D7-A6EX-01 11 58979598 58979598 G C MPEG1 Silent p.T247T 0.18 TCGA-D7-A6EX-01 11 6629388 6629388 G A ILK Missense_Mutation p.D68N 0.28 deleterious(0) probably_damaging(1) TCGA-D7-A6EX-01 11 66384208 66384208 G C RBM14-RBM4 Missense_Mutation p.G6A 0.26 deleterious(0.01) probably_damaging(1) TCGA-D7-A6EX-01 11 82877703 82877703 G A PCF11 Nonsense_Mutation p.W588* 0.23 TCGA-D7-A6EX-01 12 109889571 109889571 C G KCTD10 Missense_Mutation p.L257F 0.06 deleterious(0) probably_damaging(0.999) TCGA-D7-A6EX-01 12 118673390 118673390 G A TAOK3 Missense_Mutation p.A175V 0.28 deleterious(0) possibly_damaging(0.826) TCGA-D7-A6EX-01 12 119943017 119943017 C A CCDC60 Silent p.P264P 0.51 TCGA-D7-A6EX-01 12 120995448 120995448 C T RNF10 Silent p.S310S 0.25 TCGA-D7-A6EX-01 12 26377248 26377248 G T SSPN Missense_Mutation p.G101V 0.06 deleterious(0) probably_damaging(1) TCGA-D7-A6EX-01 12 26377249 26377249 C T SSPN Silent p.G101G 0.06 TCGA-D7-A6EX-01 12 47629392 47629392 G T PCED1B Silent p.R182R 0.16 TCGA-D7-A6EX-01 12 6664943 6664943 G A IFFO1 Missense_Mutation p.R85C 0.03 deleterious(0) possibly_damaging(0.736) TCGA-D7-A6EX-01 12 72288103 72288103 A T TBC1D15 Splice_Site p.X220_splice 0.31 TCGA-D7-A6EX-01 13 103295577 103295577 A G TPP2 Missense_Mutation p.T676A 0.25 tolerated(0.59) benign(0.114) TCGA-D7-A6EX-01 13 103443378 103443378 A T KDELC1 Missense_Mutation p.L319Q 0.24 deleterious(0) probably_damaging(0.995) TCGA-D7-A6EX-01 13 39438623 39438623 C T FREM2 Silent p.S2621S 0.85 TCGA-D7-A6EX-01 13 77581388 77581388 C T FBXL3 Missense_Mutation p.M393I 0.24 deleterious(0.04) probably_damaging(0.958) TCGA-D7-A6EX-01 14 102028724 102028724 C T DIO3 Silent p.H297H 0.38 TCGA-D7-A6EX-01 14 105169749 105169749 G A INF2 Missense_Mutation p.E209K 0.25 deleterious(0.02) probably_damaging(0.991) TCGA-D7-A6EX-01 14 105752690 105752690 C G BRF1 Missense_Mutation p.G70R 0.38 deleterious(0) probably_damaging(0.977) TCGA-D7-A6EX-01 14 92601793 92601795 AGA - CPSF2 In_Frame_Del p.E169del 0.29 TCGA-D7-A6EX-01 15 50189559 50189559 A G ATP8B4 Missense_Mutation p.F876S 0.06 deleterious(0) probably_damaging(0.997) TCGA-D7-A6EX-01 15 65756155 65756155 C T DPP8 Missense_Mutation p.D655N 0.14 tolerated(1) benign(0.001) TCGA-D7-A6EX-01 15 73614941 73614941 G T HCN4 Missense_Mutation p.L1165M 0.76 deleterious_low_confidence(0.02) probably_damaging(0.924) TCGA-D7-A6EX-01 16 22325003 22325003 G T POLR3E Missense_Mutation p.D143Y 0.14 deleterious(0) probably_damaging(0.995) TCGA-D7-A6EX-01 16 25251032 25251032 C T ZKSCAN2 3'UTR 0.33 TCGA-D7-A6EX-01 16 31308895 31308895 G A ITGAM Missense_Mutation p.D473N 0.34 tolerated(0.06) benign(0.177) TCGA-D7-A6EX-01 16 3614464 3614464 G A NLRC3 Silent p.F205F 0.33 TCGA-D7-A6EX-01 16 57108564 57108564 C A NLRC5 Missense_Mutation p.L1574I 0.40 deleterious(0.04) probably_damaging(0.999) TCGA-D7-A6EX-01 16 57741405 57741405 G A CCDC135 Missense_Mutation p.G298S 0.36 deleterious(0) probably_damaging(1) TCGA-D7-A6EX-01 16 67197743 67197743 C T HSF4 5'UTR 0.48 TCGA-D7-A6EX-01 16 71012941 71012941 T A HYDIN Missense_Mutation p.N1505I 0.09 possibly_damaging(0.743) TCGA-D7-A6EX-01 17 10358965 10358965 G A MYH4 Missense_Mutation p.P714S 0.38 deleterious(0.02) possibly_damaging(0.632) TCGA-D7-A6EX-01 17 1264554 1264554 G A YWHAE Missense_Mutation p.T137I 0.76 tolerated_low_confidence(0.1) benign(0.017) TCGA-D7-A6EX-01 17 35899297 35899297 C T SYNRG Silent p.L1139L 0.43 TCGA-D7-A6EX-01 17 36486448 36486448 C A GPR179 Missense_Mutation p.A1002S 0.08 tolerated(0.78) benign(0.002) TCGA-D7-A6EX-01 17 38285676 38285676 C T MSL1 Missense_Mutation p.R128W 0.38 deleterious(0) possibly_damaging(0.721) TCGA-D7-A6EX-01 17 39021123 39021123 C T KRT12 Missense_Mutation p.D248N 0.39 deleterious(0.04) probably_damaging(1) TCGA-D7-A6EX-01 17 67031410 67031410 C T ABCA9 Missense_Mutation p.A369T 0.30 deleterious(0.02) probably_damaging(0.913) TCGA-D7-A6EX-01 17 72541894 72541894 G A CD300C Missense_Mutation p.R10W 0.31 deleterious(0.02) unknown(0) TCGA-D7-A6EX-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.76 tolerated(0.11) benign(0.308) TCGA-D7-A6EX-01 18 12971249 12971249 A T SEH1L Missense_Mutation p.R207W 0.27 deleterious(0) probably_damaging(0.997) TCGA-D7-A6EX-01 18 43535237 43535237 C A EPG5 Missense_Mutation p.R44I 0.12 tolerated_low_confidence(0.15) benign(0.147) TCGA-D7-A6EX-01 18 5398078 5398078 G A EPB41L3 Missense_Mutation p.A805V 0.26 tolerated(0.06) benign(0.231) TCGA-D7-A6EX-01 18 77134098 77134098 T A ATP9B Missense_Mutation p.F1091I 0.30 deleterious(0) possibly_damaging(0.562) TCGA-D7-A6EX-01 19 19653766 19653766 C A CILP2 Missense_Mutation p.P321H 0.38 deleterious(0.01) probably_damaging(0.974) TCGA-D7-A6EX-01 19 40366185 40366185 G A FCGBP Silent p.G4683G 0.36 TCGA-D7-A6EX-01 19 41860824 41860824 C T B9D2 Silent p.P103P 0.43 TCGA-D7-A6EX-01 19 46375695 46375695 C G FOXA3 Nonsense_Mutation p.Y144* 0.08 TCGA-D7-A6EX-01 19 49131786 49131786 C A SPHK2 Intron 0.43 TCGA-D7-A6EX-01 19 5772830 5772830 G A CATSPERD Missense_Mutation p.D599N 0.52 tolerated(0.61) benign(0.01) TCGA-D7-A6EX-01 19 8665978 8665978 G A ADAMTS10 Missense_Mutation p.P215L 0.29 tolerated(0.19) benign(0.001) TCGA-D7-A6EX-01 1 110586377 110586377 G A STRIP1 Silent p.T395T 0.29 TCGA-D7-A6EX-01 1 147091941 147091941 G A BCL9 Silent p.R660R 0.32 TCGA-D7-A6EX-01 1 155217734 155217734 G T FAM189B Missense_Mutation p.L616M 0.11 tolerated(0.06) benign(0.014) TCGA-D7-A6EX-01 1 158061169 158061169 T G KIRREL Missense_Mutation p.F432V 0.69 tolerated(1) benign(0.002) TCGA-D7-A6EX-01 1 158607932 158607932 G A SPTA1 Missense_Mutation p.R1694C 0.21 deleterious(0) probably_damaging(1) TCGA-D7-A6EX-01 1 158906861 158906861 A G PYHIN1 Missense_Mutation p.E54G 0.21 deleterious(0.02) possibly_damaging(0.796) TCGA-D7-A6EX-01 1 161254257 161254257 G T PCP4L1 Missense_Mutation p.D65Y 0.12 deleterious(0) probably_damaging(0.996) TCGA-D7-A6EX-01 1 197069766 197069766 G A ASPM Missense_Mutation p.T2872M 0.20 tolerated(0.21) benign(0.065) TCGA-D7-A6EX-01 1 201973563 201973563 T G RNPEP Missense_Mutation p.I578S 0.37 deleterious(0.02) benign(0.158) TCGA-D7-A6EX-01 1 203669982 203669982 T C ATP2B4 Missense_Mutation p.S278P 0.09 deleterious(0) probably_damaging(0.999) TCGA-D7-A6EX-01 1 216348525 216348525 G C USH2A Intron 0.21 TCGA-D7-A6EX-01 1 222923272 222923272 A T FAM177B Missense_Mutation p.N117Y 0.05 deleterious(0.01) benign(0.178) TCGA-D7-A6EX-01 1 233335973 233335973 C G PCNXL2 Silent p.G967G 0.40 TCGA-D7-A6EX-01 1 236718952 236718952 C T HEATR1 Missense_Mutation p.D1885N 0.17 tolerated(0.08) benign(0.04) TCGA-D7-A6EX-01 1 246754904 246754904 G C CNST Missense_Mutation p.E14Q 0.08 deleterious(0.03) possibly_damaging(0.782) TCGA-D7-A6EX-01 1 247902442 247902442 T G OR14K1 Missense_Mutation p.F176V 0.18 deleterious(0) probably_damaging(1) TCGA-D7-A6EX-01 1 248039484 248039484 G C TRIM58 Missense_Mutation p.W385S 0.18 tolerated(0.21) probably_damaging(0.992) TCGA-D7-A6EX-01 1 32672180 32672180 A T IQCC Missense_Mutation p.H166L 0.05 tolerated(0.09) benign(0.159) TCGA-D7-A6EX-01 1 39818804 39818804 G A MACF1 Silent p.S1713S 0.25 TCGA-D7-A6EX-01 1 40208962 40208962 C T PPIE Silent p.S92S 0.34 TCGA-D7-A6EX-01 1 67299381 67299381 G A WDR78 Nonsense_Mutation p.R634* 0.18 TCGA-D7-A6EX-01 20 5169758 5169758 T C CDS2 Missense_Mutation p.S343P 0.53 deleterious(0) probably_damaging(0.993) TCGA-D7-A6EX-01 20 5169759 5169759 C T CDS2 Missense_Mutation p.S343F 0.52 deleterious(0) probably_damaging(0.997) TCGA-D7-A6EX-01 20 54575874 54575874 T A CBLN4 Silent p.T107T 0.14 TCGA-D7-A6EX-01 21 32624423 32624423 C T TIAM1 Missense_Mutation p.R349Q 0.62 tolerated(0.23) benign(0.063) TCGA-D7-A6EX-01 22 32215101 32215101 G T DEPDC5 Missense_Mutation p.R587L 0.33 deleterious(0) probably_damaging(0.959) TCGA-D7-A6EX-01 22 39268251 39268251 C T CBX6 5'UTR 0.27 TCGA-D7-A6EX-01 2 105885782 105885782 G A TGFBRAP1 Nonsense_Mutation p.Q785* 0.32 TCGA-D7-A6EX-01 2 106497999 106497999 T A NCK2 Missense_Mutation p.W148R 0.25 deleterious(0) probably_damaging(0.999) TCGA-D7-A6EX-01 2 113514012 113514012 T A CKAP2L Missense_Mutation p.R312S 0.27 tolerated(0.11) benign(0.016) TCGA-D7-A6EX-01 2 179443704 179443704 C A TTN Missense_Mutation p.D22685Y 0.37 TCGA-D7-A6EX-01 2 180348015 180348015 G T ZNF385B Missense_Mutation p.N218K 0.24 tolerated(0.63) benign(0.05) TCGA-D7-A6EX-01 2 182394271 182394271 A G ITGA4 Missense_Mutation p.I812V 0.19 tolerated(0.16) possibly_damaging(0.578) TCGA-D7-A6EX-01 2 188243688 188243688 A T CALCRL Missense_Mutation p.L160H 0.29 deleterious(0) probably_damaging(0.996) TCGA-D7-A6EX-01 2 202900917 202900917 C T FZD7 Missense_Mutation p.P516L 0.23 tolerated(0.11) possibly_damaging(0.614) TCGA-D7-A6EX-01 2 238249500 238249500 A C COL6A3 Missense_Mutation p.F2687V 0.20 unknown(0) TCGA-D7-A6EX-01 2 27157486 27157486 G A DPYSL5 Silent p.T277T 0.57 TCGA-D7-A6EX-01 2 56420319 56420319 C T CCDC85A Silent p.H328H 0.35 TCGA-D7-A6EX-01 2 75720303 75720303 C A EVA1A 3'UTR 0.20 TCGA-D7-A6EX-01 2 9525431 9525431 C T ASAP2 Nonsense_Mutation p.R692* 0.26 TCGA-D7-A6EX-01 3 127983461 127983461 T G EEFSEC Missense_Mutation p.L208R 0.26 tolerated(0.32) benign(0.14) TCGA-D7-A6EX-01 3 134670439 134670439 C T EPHB1 Missense_Mutation p.T117I 0.10 deleterious(0) possibly_damaging(0.756) TCGA-D7-A6EX-01 3 138724458 138724458 G A PRR23A Missense_Mutation p.P218L 0.41 tolerated(1) benign(0.009) TCGA-D7-A6EX-01 3 38263105 38263105 A G OXSR1 Missense_Mutation p.D176G 0.37 deleterious(0.04) possibly_damaging(0.707) TCGA-D7-A6EX-01 3 38278446 38278446 A G OXSR1 Silent p.Q356Q 0.39 TCGA-D7-A6EX-01 3 41266097 41266097 G C CTNNB1 Missense_Mutation p.D32H 0.37 deleterious(0) probably_damaging(0.988) TCGA-D7-A6EX-01 3 45637009 45637009 G T LIMD1 Missense_Mutation p.G213V 0.07 deleterious(0.03) benign(0.141) TCGA-D7-A6EX-01 3 45785060 45785060 T C SACM1L Missense_Mutation p.F555L 0.06 deleterious(0) benign(0.302) TCGA-D7-A6EX-01 3 48965115 48965115 G T ARIH2 Missense_Mutation p.V42L 0.37 tolerated(0.37) benign(0.007) TCGA-D7-A6EX-01 3 49052578 49052578 C T WDR6 Missense_Mutation p.H1105Y 0.35 deleterious(0.04) benign(0.169) TCGA-D7-A6EX-01 3 51399383 51399383 C T DOCK3 Silent p.D1700D 0.20 TCGA-D7-A6EX-01 3 74347290 74347290 A T CNTN3 Missense_Mutation p.F740Y 0.11 deleterious(0.04) probably_damaging(0.998) TCGA-D7-A6EX-01 4 186545502 186545502 C T SORBS2 Missense_Mutation p.G457S 0.32 tolerated(0.21) probably_damaging(1) TCGA-D7-A6EX-01 4 515679 515679 G C PIGG Silent p.V521V 0.45 TCGA-D7-A6EX-01 4 55979504 55979504 T A KDR Missense_Mutation p.T315S 0.05 tolerated(0.7) benign(0.026) TCGA-D7-A6EX-01 4 6083437 6083437 C A JAKMIP1 Nonsense_Mutation p.E334* 0.39 TCGA-D7-A6EX-01 4 858996 858996 G A GAK Missense_Mutation p.S1027L 0.28 deleterious(0.02) probably_damaging(0.952) TCGA-D7-A6EX-01 5 140202818 140202818 C T PCDHA5 Silent p.N486N 0.27 TCGA-D7-A6EX-01 5 140604711 140604711 C T PCDHB14 Missense_Mutation p.A545V 0.29 tolerated_low_confidence(0.05) benign(0.099) TCGA-D7-A6EX-01 5 154393634 154393634 T A KIF4B Missense_Mutation p.L72H 0.49 deleterious(0) probably_damaging(1) TCGA-D7-A6EX-01 5 161580118 161580118 G T GABRG2 Missense_Mutation p.R431L 0.40 tolerated(0.21) benign(0.047) TCGA-D7-A6EX-01 5 176517594 176517594 T C FGFR4 Missense_Mutation p.Y99H 0.39 deleterious(0) probably_damaging(0.998) TCGA-D7-A6EX-01 5 42719504 42719504 A C GHR Missense_Mutation p.Q632P 0.06 deleterious(0.01) possibly_damaging(0.732) TCGA-D7-A6EX-01 6 112400915 112400915 C T TUBE1 Silent p.Q123Q 0.24 TCGA-D7-A6EX-01 6 45405767 45405767 G C RUNX2 Missense_Mutation p.D222H 0.38 deleterious(0) probably_damaging(1) TCGA-D7-A6EX-01 6 76551089 76551089 T C MYO6 Silent p.N270N 0.35 TCGA-D7-A6EX-01 7 141427331 141427331 G A WEE2 Intron 0.48 TCGA-D7-A6EX-01 7 141770793 141770793 G A MGAM Intron 0.33 TCGA-D7-A6EX-01 7 16823261 16823261 A G TSPAN13 3'UTR 0.24 TCGA-D7-A6EX-01 7 82583635 82583635 C T PCLO Missense_Mutation p.E2212K 0.04 unknown(0) TCGA-D7-A6EX-01 7 87370836 87370836 G T RUNDC3B Silent p.G207G 0.62 TCGA-D7-A6EX-01 7 88963268 88963268 C T ZNF804B Silent p.F324F 0.03 TCGA-D7-A6EX-01 8 100866130 100866130 C T VPS13B Missense_Mutation p.R3530W 0.13 deleterious(0) possibly_damaging(0.689) TCGA-D7-A6EX-01 8 101277003 101277003 C A RNF19A Missense_Mutation p.R401L 0.09 deleterious(0.01) possibly_damaging(0.783) TCGA-D7-A6EX-01 8 110984808 110984808 T G KCNV1 Missense_Mutation p.I224L 0.08 tolerated(0.1) benign(0.084) TCGA-D7-A6EX-01 8 11142367 11142367 C T MTMR9 5'UTR 0.38 TCGA-D7-A6EX-01 8 124992960 124992960 C T FER1L6 Missense_Mutation p.A440V 0.16 tolerated(0.28) benign(0.021) TCGA-D7-A6EX-01 8 131916177 131916177 A C ADCY8 Silent p.T584T 0.21 TCGA-D7-A6EX-01 8 143958622 143958622 G A CYP11B1 Missense_Mutation p.R138C 0.39 deleterious(0.01) benign(0.299) TCGA-D7-A6EX-01 8 1496967 1496967 G A DLGAP2 Silent p.A36A 0.29 TCGA-D7-A6EX-01 8 27516485 27516485 C T SCARA3 Silent p.R266R 0.18 TCGA-D7-A6EX-01 8 59750733 59750733 G A TOX Silent p.A277A 0.29 TCGA-D7-A6EX-01 8 71044188 71044188 C A NCOA2 Missense_Mutation p.A1070S 0.33 tolerated(0.86) benign(0.001) TCGA-D7-A6EX-01 8 72938259 72938259 C T TRPA1 Missense_Mutation p.R996H 0.16 tolerated(0.28) benign(0.003) TCGA-D7-A6EX-01 8 86126071 86126071 T G E2F5 Missense_Mutation p.F339V 0.16 deleterious(0) probably_damaging(0.995) TCGA-D7-A6EX-01 9 126132659 126132659 G C CRB2 Missense_Mutation p.V443L 0.15 tolerated(0.49) benign(0.097) TCGA-D7-A6EX-01 9 131019452 131019452 C T GOLGA2 Missense_Mutation p.R968H 0.20 tolerated(0.34) benign(0.018) TCGA-D7-A6EX-01 9 131495706 131495706 G A ZER1 Missense_Mutation p.R748C 0.14 tolerated(0.1) benign(0.425) TCGA-D7-A6EX-01 9 134019765 134019765 G T NUP214 Missense_Mutation p.A465S 0.10 possibly_damaging(0.567) TCGA-D7-A6EX-01 9 40774871 40774872 - T ZNF658 Frame_Shift_Ins p.I135Nfs*4 0.22 TCGA-D7-A6EX-01 9 8499815 8499815 G A PTPRD Silent p.V718V 0.62 TCGA-D7-A6EX-01 X 64719798 64719798 G A ZC3H12B Missense_Mutation p.G340D 0.03 deleterious(0.01) probably_damaging(0.986) TCGA-D7-A6EX-01 X 76907602 76907602 A C ATRX Splice_Site p.X1519_splice 0.34 TCGA-D7-A6EY-01 10 101120678 101120678 C T CNNM1 Missense_Mutation p.R602W 0.14 deleterious(0) possibly_damaging(0.579) TCGA-D7-A6EY-01 10 101656145 101656145 T C DNMBP Missense_Mutation p.Y977C 0.13 deleterious(0) probably_damaging(1) TCGA-D7-A6EY-01 10 103609552 103609552 G A C10orf76 Missense_Mutation p.A653V 0.14 tolerated(0.98) benign(0.006) TCGA-D7-A6EY-01 10 104247992 104247992 T C ACTR1A Missense_Mutation p.H77R 0.16 deleterious(0.04) probably_damaging(0.917) TCGA-D7-A6EY-01 10 106059062 106059062 C T GSTO2 3'UTR 0.23 TCGA-D7-A6EY-01 10 106075561 106075561 G A ITPRIP Silent p.R83R 0.20 TCGA-D7-A6EY-01 10 108378020 108378020 G A SORCS1 Missense_Mutation p.T936I 0.18 deleterious(0.01) probably_damaging(0.972) TCGA-D7-A6EY-01 10 115618425 115618425 C T NHLRC2 Missense_Mutation p.T106I 0.10 tolerated(0.09) benign(0.063) TCGA-D7-A6EY-01 10 115664653 115664653 A C NHLRC2 Silent p.L594L 0.09 TCGA-D7-A6EY-01 10 115896980 115896980 G A C10orf118 Nonsense_Mutation p.R431* 0.17 TCGA-D7-A6EY-01 10 115977310 115977310 A C TDRD1 Missense_Mutation p.K740T 0.15 tolerated(0.4) benign(0.075) TCGA-D7-A6EY-01 10 115986880 115986880 A - TDRD1 Frame_Shift_Del p.N1077Ifs*4 0.19 TCGA-D7-A6EY-01 10 118310665 118310665 C A PNLIP Missense_Mutation p.S127Y 0.17 deleterious(0) probably_damaging(0.991) TCGA-D7-A6EY-01 10 11963196 11963196 G A UPF2 3'UTR 0.06 TCGA-D7-A6EY-01 10 121602088 121602088 G A MCMBP Silent p.S342S 0.10 TCGA-D7-A6EY-01 10 12203088 12203088 T C SEC61A2 Missense_Mutation p.W379R 0.15 deleterious(0) probably_damaging(0.992) TCGA-D7-A6EY-01 10 12219815 12219815 C - NUDT5 Frame_Shift_Del p.G89Afs*4 0.24 TCGA-D7-A6EY-01 10 123600765 123600765 G - ATE1 Frame_Shift_Del p.P330Lfs*26 0.26 TCGA-D7-A6EY-01 10 124339284 124339284 C T DMBT1 Silent p.G290G 0.12 TCGA-D7-A6EY-01 10 124358534 124358534 T C DMBT1 Silent p.S1067S 0.10 TCGA-D7-A6EY-01 10 126715332 126715332 C T CTBP2 Missense_Mutation p.A333T 0.12 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-D7-A6EY-01 10 13213021 13213021 A C MCM10 Missense_Mutation p.N36T 0.13 tolerated_low_confidence(0.41) benign(0.002) TCGA-D7-A6EY-01 10 13375848 13375848 T C SEPHS1 Missense_Mutation p.T177A 0.22 deleterious(0) possibly_damaging(0.676) TCGA-D7-A6EY-01 10 135012650 135012650 G T KNDC1 Missense_Mutation p.D880Y 0.19 deleterious(0) probably_damaging(0.979) TCGA-D7-A6EY-01 10 135350628 135350628 T C CYP2E1 Silent p.D343D 0.23 TCGA-D7-A6EY-01 10 15089211 15089211 G A OLAH 5'UTR 0.23 TCGA-D7-A6EY-01 10 17151670 17151670 G A CUBN Silent p.C360C 0.13 TCGA-D7-A6EY-01 10 22617601 22617601 A - BMI1 Frame_Shift_Del p.M183Wfs*18 0.09 TCGA-D7-A6EY-01 10 29760116 29760116 C - SVIL Frame_Shift_Del p.M1863Wfs*44 0.28 TCGA-D7-A6EY-01 10 30629220 30629220 G A MTPAP Missense_Mutation p.R164W 0.21 deleterious(0.01) possibly_damaging(0.462) TCGA-D7-A6EY-01 10 35929104 35929104 C T FZD8 Silent p.S418S 0.14 TCGA-D7-A6EY-01 10 43695140 43695140 G T RASGEF1A Missense_Mutation p.A278D 0.22 deleterious(0) probably_damaging(0.996) TCGA-D7-A6EY-01 10 46965734 46965734 A G SYT15 Missense_Mutation p.L268P 0.07 deleterious(0) probably_damaging(0.993) TCGA-D7-A6EY-01 10 46969318 46969318 G A SYT15 Missense_Mutation p.A48V 0.10 tolerated(0.26) benign(0.01) TCGA-D7-A6EY-01 10 48413794 48413794 G A GDF2 Silent p.G358G 0.23 TCGA-D7-A6EY-01 10 49687769 49687769 C T ARHGAP22 Missense_Mutation p.E121K 0.14 deleterious(0) possibly_damaging(0.842) TCGA-D7-A6EY-01 10 50732704 50732704 T C ERCC6-PGBD3 Missense_Mutation p.K258E 0.19 deleterious_low_confidence(0) possibly_damaging(0.746) TCGA-D7-A6EY-01 10 5969498 5969498 G T FBXO18 Missense_Mutation p.L992F 0.10 tolerated(0.09) possibly_damaging(0.723) TCGA-D7-A6EY-01 10 61926408 61926408 C T ANK3 Missense_Mutation p.R852H 0.24 possibly_damaging(0.743) TCGA-D7-A6EY-01 10 64573486 64573486 G T EGR2 Silent p.A304A 0.31 TCGA-D7-A6EY-01 10 70513668 70513668 A G CCAR1 Missense_Mutation p.D393G 0.12 deleterious(0) probably_damaging(0.956) TCGA-D7-A6EY-01 10 70530982 70530982 T C CCAR1 Missense_Mutation p.L773P 0.17 deleterious(0) probably_damaging(0.979) TCGA-D7-A6EY-01 10 70968515 70968515 C T SUPV3L1 Silent p.S695S 0.08 TCGA-D7-A6EY-01 10 71690203 71690203 C - COL13A1 Frame_Shift_Del p.P517Qfs*9 0.22 TCGA-D7-A6EY-01 10 71977567 71977567 C G PPA1 Splice_Site p.X99_splice 0.12 TCGA-D7-A6EY-01 10 72468361 72468361 C A ADAMTS14 Missense_Mutation p.L233I 0.11 deleterious(0.02) probably_damaging(0.998) TCGA-D7-A6EY-01 10 7326073 7326073 C A SFMBT2 Missense_Mutation p.G189C 0.21 deleterious(0) benign(0.323) TCGA-D7-A6EY-01 10 73767293 73767293 C T CHST3 Silent p.I168I 0.22 TCGA-D7-A6EY-01 10 73767317 73767317 G - CHST3 Frame_Shift_Del p.G178Afs*38 0.25 TCGA-D7-A6EY-01 10 75160584 75160584 A G ANXA7 Missense_Mutation p.Y11H 0.14 tolerated(0.05) unknown(0) TCGA-D7-A6EY-01 10 75204509 75204509 G A PPP3CB Missense_Mutation p.A448V 0.13 tolerated(0.05) benign(0.045) TCGA-D7-A6EY-01 10 75407872 75407872 T C SYNPO2L Missense_Mutation p.Q513R 0.24 tolerated(0.51) benign(0.248) TCGA-D7-A6EY-01 10 75451802 75451802 T C AGAP5 Missense_Mutation p.H132R 0.08 deleterious_low_confidence(0) benign(0.027) TCGA-D7-A6EY-01 10 75550923 75550923 A G ZSWIM8 Missense_Mutation p.T378A 0.13 tolerated(1) benign(0.124) TCGA-D7-A6EY-01 10 88854379 88854379 G - GLUD1 Frame_Shift_Del p.R50Gfs*40 0.11 TCGA-D7-A6EY-01 10 88992578 88992578 A G NUTM2A Missense_Mutation p.M524V 0.17 deleterious(0.01) probably_damaging(0.989) TCGA-D7-A6EY-01 10 89272954 89272954 T C MINPP1 Silent p.D303D 0.20 TCGA-D7-A6EY-01 10 93024278 93024278 G A PCGF5 Splice_Site p.X221_splice 0.22 TCGA-D7-A6EY-01 10 930435 930435 A G LARP4B Silent p.P31P 0.18 TCGA-D7-A6EY-01 10 93487 93487 C T TUBB8 Missense_Mutation p.R282Q 0.19 tolerated_low_confidence(0.07) benign(0.019) TCGA-D7-A6EY-01 10 95259896 95259896 T - CEP55 Frame_Shift_Del p.L30* 0.08 TCGA-D7-A6EY-01 10 97402772 97402772 G A ALDH18A1 Missense_Mutation p.R94C 0.24 deleterious(0) probably_damaging(0.999) TCGA-D7-A6EY-01 10 97987266 97987266 G A BLNK Silent p.P87P 0.22 TCGA-D7-A6EY-01 10 98145927 98145927 C A TLL2 Missense_Mutation p.S633I 0.10 deleterious(0.03) possibly_damaging(0.885) TCGA-D7-A6EY-01 10 98714922 98714922 A T LCOR Missense_Mutation p.N182I 0.26 deleterious(0.01) benign(0.136) TCGA-D7-A6EY-01 10 99968034 99968035 TC - R3HCC1L Frame_Shift_Del p.S57Pfs*6 0.15 TCGA-D7-A6EY-01 11 102221012 102221012 T A BIRC2 Missense_Mutation p.L143M 0.11 tolerated(0.22) benign(0.04) TCGA-D7-A6EY-01 11 102221453 102221453 C A BIRC2 Missense_Mutation p.L290I 0.07 deleterious(0) probably_damaging(1) TCGA-D7-A6EY-01 11 102465465 102465465 T C MMP20 Missense_Mutation p.H326R 0.14 tolerated(0.5) benign(0.001) TCGA-D7-A6EY-01 11 102663443 102663443 T C MMP1 Missense_Mutation p.Y309C 0.09 tolerated(0.16) possibly_damaging(0.819) TCGA-D7-A6EY-01 11 102713455 102713455 A C MMP3 Missense_Mutation p.F100V 0.14 deleterious(0) possibly_damaging(0.509) TCGA-D7-A6EY-01 11 102713563 102713563 T - MMP3 Frame_Shift_Del p.I64Sfs*12 0.23 TCGA-D7-A6EY-01 11 108032847 108032847 T - NPAT Frame_Shift_Del p.T1025Lfs*28 0.18 TCGA-D7-A6EY-01 11 1086014 1086014 C T MUC2 Missense_Mutation p.R952W 0.27 probably_damaging(0.991) TCGA-D7-A6EY-01 11 111156426 111156426 C A C11orf53 Missense_Mutation p.P120T 0.19 tolerated(0.42) benign(0.028) TCGA-D7-A6EY-01 11 111591459 111591459 A C SIK2 Silent p.R585R 0.22 TCGA-D7-A6EY-01 11 113675422 113675422 T C USP28 Silent p.P877P 0.11 TCGA-D7-A6EY-01 11 113711433 113711433 G A USP28 Missense_Mutation p.R141C 0.20 deleterious(0) probably_damaging(1) TCGA-D7-A6EY-01 11 114316804 114316804 G A REXO2 Silent p.L175L 0.24 TCGA-D7-A6EY-01 11 114401614 114401614 T G NXPE1 5'UTR 0.16 TCGA-D7-A6EY-01 11 1156159 1156159 C T MUC5AC Missense_Mutation p.P162S 0.20 deleterious(0) probably_damaging(0.992) TCGA-D7-A6EY-01 11 116691961 116691961 G A APOA4 Silent p.A271A 0.23 TCGA-D7-A6EY-01 11 117214935 117214935 C T CEP164 Silent p.L46L 0.14 TCGA-D7-A6EY-01 11 118343989 118343989 T C KMT2A Silent p.S705S 0.12 TCGA-D7-A6EY-01 11 118851386 118851386 C T FOXR1 Silent p.R266R 0.19 TCGA-D7-A6EY-01 11 118982338 118982338 C T C2CD2L Silent p.L340L 0.16 TCGA-D7-A6EY-01 11 119045329 119045329 T C NLRX1 Silent p.G339G 0.16 TCGA-D7-A6EY-01 11 119063905 119063905 C T CCDC153 Missense_Mutation p.S102N 0.19 tolerated(0.07) benign(0.013) TCGA-D7-A6EY-01 11 119182586 119182586 C T MCAM Missense_Mutation p.R406H 0.19 tolerated(0.06) possibly_damaging(0.871) TCGA-D7-A6EY-01 11 120200688 120200688 T G TMEM136 Missense_Mutation p.S90A 0.09 tolerated(0.21) benign(0.008) TCGA-D7-A6EY-01 11 121023729 121023729 C T TECTA Silent p.N1415N 0.12 TCGA-D7-A6EY-01 11 121448043 121448043 C T SORL1 Missense_Mutation p.R1172C 0.23 deleterious(0.02) probably_damaging(0.997) TCGA-D7-A6EY-01 11 121454237 121454237 G A SORL1 Silent p.A1217A 0.24 TCGA-D7-A6EY-01 11 121454270 121454270 C T SORL1 Silent p.S1228S 0.14 TCGA-D7-A6EY-01 11 121461769 121461769 C T SORL1 Missense_Mutation p.R1425C 0.09 deleterious(0) possibly_damaging(0.883) TCGA-D7-A6EY-01 11 122829967 122829967 C T C11orf63 Silent p.Y717Y 0.14 TCGA-D7-A6EY-01 11 123900612 123900612 A C OR10G8 Missense_Mutation p.S95R 0.13 deleterious(0) benign(0.197) TCGA-D7-A6EY-01 11 125476316 125476316 C A STT3A Missense_Mutation p.L246M 0.18 deleterious(0.02) possibly_damaging(0.517) TCGA-D7-A6EY-01 11 126305200 126305200 T C KIRREL3 Splice_Site p.X518_splice 0.27 TCGA-D7-A6EY-01 11 1272919 1272919 T C MUC5B Missense_Mutation p.S4937P 0.14 unknown(0) TCGA-D7-A6EY-01 11 1275426 1275426 C T MUC5B Missense_Mutation p.R5108C 0.13 unknown(0) TCGA-D7-A6EY-01 11 128781788 128781788 T C KCNJ5 Missense_Mutation p.V207A 0.12 deleterious(0.02) probably_damaging(1) TCGA-D7-A6EY-01 11 129321068 129321068 A C BARX2 Missense_Mutation p.K204T 0.11 deleterious(0) probably_damaging(0.999) TCGA-D7-A6EY-01 11 130343474 130343474 G A ADAMTS15 Missense_Mutation p.G871R 0.22 deleterious(0) probably_damaging(0.909) TCGA-D7-A6EY-01 11 14891207 14891207 C T PDE3B 3'UTR 0.15 TCGA-D7-A6EY-01 11 17743066 17743066 G A MYOD1 3'UTR 0.20 TCGA-D7-A6EY-01 11 18194860 18194860 G T MRGPRX4 Missense_Mutation p.E19D 0.16 tolerated(1) benign(0) TCGA-D7-A6EY-01 11 18231990 18231990 A - RP11-113D6.10 3'UTR 0.08 TCGA-D7-A6EY-01 11 18330492 18330492 C A HPS5 Splice_Site p.X204_splice 0.18 TCGA-D7-A6EY-01 11 18424437 18424437 C T LDHA Missense_Mutation p.R186C 0.07 tolerated(0.09) possibly_damaging(0.549) TCGA-D7-A6EY-01 11 18764870 18764870 G A PTPN5 Missense_Mutation p.T133M 0.09 tolerated_low_confidence(0.3) benign(0.002) TCGA-D7-A6EY-01 11 20409659 20409659 C - PRMT3 Frame_Shift_Del p.H43Tfs*50 0.13 TCGA-D7-A6EY-01 11 25100244 25100244 T C LUZP2 3'UTR 0.33 TCGA-D7-A6EY-01 11 314210 314210 C - IFITM1 Frame_Shift_Del p.S16Afs*9 0.16 TCGA-D7-A6EY-01 11 32676507 32676507 T - CCDC73 Frame_Shift_Del p.A220Qfs*5 0.19 TCGA-D7-A6EY-01 11 3781846 3781846 C T NUP98 Missense_Mutation p.G366D 0.10 deleterious(0.01) probably_damaging(0.988) TCGA-D7-A6EY-01 11 397114 397114 G A PKP3 Missense_Mutation p.A205T 0.13 tolerated(0.51) benign(0.001) TCGA-D7-A6EY-01 11 43465025 43465025 G A TTC17 Missense_Mutation p.R801H 0.20 tolerated(0.05) probably_damaging(0.98) TCGA-D7-A6EY-01 11 44069815 44069815 C T ACCSL Missense_Mutation p.R77W 0.13 deleterious(0) benign(0.232) TCGA-D7-A6EY-01 11 45117336 45117336 C T PRDM11 5'UTR 0.22 TCGA-D7-A6EY-01 11 45987063 45987063 G A PHF21A Silent p.L266L 0.16 TCGA-D7-A6EY-01 11 46760822 46760822 T G F2 Missense_Mutation p.F578C 0.11 tolerated(0.18) possibly_damaging(0.651) TCGA-D7-A6EY-01 11 46897504 46897504 T C LRP4 Missense_Mutation p.T1184A 0.14 tolerated(0.11) benign(0.181) TCGA-D7-A6EY-01 11 47196853 47196853 A - ARFGAP2 Frame_Shift_Del p.R93Afs*43 0.21 TCGA-D7-A6EY-01 11 47198137 47198137 A T ARFGAP2 Missense_Mutation p.Y41N 0.18 deleterious(0) probably_damaging(0.982) TCGA-D7-A6EY-01 11 47612307 47612307 G A C1QTNF4 Missense_Mutation p.P19L 0.25 tolerated(0.41) benign(0) TCGA-D7-A6EY-01 11 47648652 47648652 A T MTCH2 Missense_Mutation p.Y221N 0.33 deleterious(0) probably_damaging(0.959) TCGA-D7-A6EY-01 11 5462721 5462721 G - OR51I1 Frame_Shift_Del p.F9Sfs*8 0.21 TCGA-D7-A6EY-01 11 55595518 55595518 C T OR5L2 Missense_Mutation p.T275I 0.14 deleterious(0.01) probably_damaging(0.971) TCGA-D7-A6EY-01 11 55761972 55761972 C T OR5F1 Missense_Mutation p.G44R 0.13 deleterious(0) probably_damaging(0.95) TCGA-D7-A6EY-01 11 5664533 5664533 A G TRIM34 Missense_Mutation p.D354G 0.20 deleterious(0) probably_damaging(0.996) TCGA-D7-A6EY-01 11 57244386 57244386 T A RTN4RL2 3'UTR 0.09 TCGA-D7-A6EY-01 11 592634 592634 C T PHRF1 Missense_Mutation p.R194C 0.22 deleterious(0) benign(0.403) TCGA-D7-A6EY-01 11 607382 607382 T C PHRF1 Silent p.L641L 0.10 TCGA-D7-A6EY-01 11 615287 615287 G T IRF7 Missense_Mutation p.P11H 0.29 deleterious_low_confidence(0.01) benign(0.104) TCGA-D7-A6EY-01 11 61563408 61563408 G A FEN1 Missense_Mutation p.R192Q 0.21 deleterious(0) possibly_damaging(0.718) TCGA-D7-A6EY-01 11 61647523 61647523 C T FADS3 Missense_Mutation p.G105E 0.16 tolerated(0.8) possibly_damaging(0.521) TCGA-D7-A6EY-01 11 62374436 62374436 C T EML3 Missense_Mutation p.A500T 0.21 tolerated(0.61) benign(0.035) TCGA-D7-A6EY-01 11 62374502 62374502 A G EML3 Missense_Mutation p.S478P 0.15 deleterious(0) probably_damaging(0.998) TCGA-D7-A6EY-01 11 6245066 6245066 C T FAM160A2 Missense_Mutation p.C184Y 0.23 deleterious(0) probably_damaging(0.998) TCGA-D7-A6EY-01 11 62455848 62455848 C T LRRN4CL Missense_Mutation p.A45T 0.14 tolerated(0.39) benign(0.162) TCGA-D7-A6EY-01 11 62558340 62558340 G A TMEM223 Missense_Mutation p.R122C 0.17 deleterious(0.01) probably_damaging(0.984) TCGA-D7-A6EY-01 11 62622763 62622763 T C SLC3A2 5'Flank 0.13 TCGA-D7-A6EY-01 11 6265540 6265540 G A CNGA4 Silent p.E543E 0.16 TCGA-D7-A6EY-01 11 62766540 62766540 C T SLC22A8 Missense_Mutation p.R205Q 0.11 tolerated(0.4) benign(0.003) TCGA-D7-A6EY-01 11 64037781 64037781 C T BAD Missense_Mutation p.G136D 0.21 deleterious(0) probably_damaging(1) TCGA-D7-A6EY-01 11 64084543 64084543 T C TRMT112 Missense_Mutation p.H86R 0.07 tolerated(0.15) benign(0.101) TCGA-D7-A6EY-01 11 64358964 64358964 G A SLC22A12 5'UTR 0.09 TCGA-D7-A6EY-01 11 64532803 64532803 T A SF1 3'UTR 0.14 TCGA-D7-A6EY-01 11 64594190 64594190 C G CDC42BPG Missense_Mutation p.R1489P 0.21 tolerated(0.17) possibly_damaging(0.693) TCGA-D7-A6EY-01 11 64602414 64602414 T C CDC42BPG Silent p.S694S 0.20 TCGA-D7-A6EY-01 11 6470355 6470355 A C TRIM3 Missense_Mutation p.L713R 0.07 deleterious(0) probably_damaging(1) TCGA-D7-A6EY-01 11 64888221 64888221 A G FAU Missense_Mutation p.Y112H 0.08 deleterious(0.02) probably_damaging(0.924) TCGA-D7-A6EY-01 11 64895929 64895929 A G SYVN1 Silent p.P593P 0.22 TCGA-D7-A6EY-01 11 65113757 65113757 C T DPF2 Missense_Mutation p.A315V 0.21 tolerated(0.19) benign(0.129) TCGA-D7-A6EY-01 11 65266625 65266625 T C MALAT1 RNA 0.18 TCGA-D7-A6EY-01 11 65269191 65269191 A G MALAT1 RNA 0.28 TCGA-D7-A6EY-01 11 65270096 65270096 T A MALAT1 RNA 0.13 TCGA-D7-A6EY-01 11 65270819 65270819 T A MALAT1 RNA 0.07 TCGA-D7-A6EY-01 11 65310639 65310639 T A LTBP3 Missense_Mutation p.N845Y 0.11 deleterious(0.04) benign(0.014) TCGA-D7-A6EY-01 11 65314283 65314283 C - LTBP3 Frame_Shift_Del p.G739Afs*7 0.18 TCGA-D7-A6EY-01 11 65349628 65349628 C T EHBP1L1 Silent p.L495L 0.20 TCGA-D7-A6EY-01 11 65361212 65361212 T A KCNK7 Silent p.P151P 0.08 TCGA-D7-A6EY-01 11 66002812 66002812 C T PACS1 Silent p.N715N 0.23 TCGA-D7-A6EY-01 11 66033664 66033664 C - KLC2 Frame_Shift_Del p.Q570Rfs*8 0.13 TCGA-D7-A6EY-01 11 6624664 6624664 T C RRP8 Silent p.R23R 0.16 TCGA-D7-A6EY-01 11 66322812 66322812 A G CTD-3074O7.2 3'Flank 0.11 TCGA-D7-A6EY-01 11 66325362 66325362 C T CTD-3074O7.2 3'Flank 0.17 TCGA-D7-A6EY-01 11 66330629 66330629 T G CTSF 3'Flank 0.07 TCGA-D7-A6EY-01 11 66625383 66625383 T C LRFN4 Silent p.A56A 0.25 TCGA-D7-A6EY-01 11 6703513 6703513 C A MRPL17 Missense_Mutation p.V122L 0.18 deleterious(0.04) possibly_damaging(0.819) TCGA-D7-A6EY-01 11 67079326 67079326 G A SSH3 Missense_Mutation p.V650M 0.14 tolerated_low_confidence(0.05) benign(0.104) TCGA-D7-A6EY-01 11 67132908 67132908 G A CLCF1 Missense_Mutation p.T126I 0.13 tolerated(0.24) benign(0.059) TCGA-D7-A6EY-01 11 67166585 67166585 C T PPP1CA Silent p.R202R 0.20 TCGA-D7-A6EY-01 11 67264892 67264892 G A PITPNM1 Silent p.P652P 0.24 TCGA-D7-A6EY-01 11 67412625 67412625 T C ACY3 Splice_Site p.X176_splice 0.08 TCGA-D7-A6EY-01 11 67814961 67814961 C T TCIRG1 Silent p.H409H 0.13 TCGA-D7-A6EY-01 11 67925352 67925352 A G SUV420H1 Missense_Mutation p.Y821H 0.25 tolerated(0.43) benign(0.029) TCGA-D7-A6EY-01 11 67926254 67926254 T A SUV420H1 Missense_Mutation p.N520I 0.16 deleterious(0.01) benign(0.197) TCGA-D7-A6EY-01 11 68475691 68475691 C A MTL5 3'UTR 0.11 TCGA-D7-A6EY-01 11 70189942 70189942 G A PPFIA1 Silent p.A625A 0.11 TCGA-D7-A6EY-01 11 71806460 71806460 C T LRTOMT Intron 0.11 TCGA-D7-A6EY-01 11 73020911 73020911 T C ARHGEF17 Missense_Mutation p.S410P 0.13 tolerated_low_confidence(0.08) benign(0.143) TCGA-D7-A6EY-01 11 73101832 73101832 C - RELT Frame_Shift_Del p.P53Qfs*178 0.18 TCGA-D7-A6EY-01 11 73429864 73429864 A T RAB6A Missense_Mutation p.D85E 0.17 deleterious(0.02) benign(0.088) TCGA-D7-A6EY-01 11 73795974 73795974 G A C2CD3 Missense_Mutation p.L1318F 0.14 deleterious(0) probably_damaging(1) TCGA-D7-A6EY-01 11 73825523 73825523 C T C2CD3 Missense_Mutation p.E546K 0.26 deleterious(0.03) probably_damaging(0.924) TCGA-D7-A6EY-01 11 74347277 74347277 C T POLD3 Silent p.R385R 0.12 TCGA-D7-A6EY-01 11 74554413 74554413 C A XRRA1 Missense_Mutation p.Q737H 0.26 tolerated(0.12) possibly_damaging(0.62) TCGA-D7-A6EY-01 11 75136621 75136621 G A KLHL35 Silent p.F397F 0.14 TCGA-D7-A6EY-01 11 76506688 76506688 G A TSKU Missense_Mutation p.A10T 0.18 tolerated(0.14) benign(0.001) TCGA-D7-A6EY-01 11 76823777 76823779 TCA - CAPN5 In_Frame_Del p.I148del 0.29 TCGA-D7-A6EY-01 11 76826568 76826568 A G CAPN5 Missense_Mutation p.K276R 0.08 tolerated(0.24) benign(0.311) TCGA-D7-A6EY-01 11 78433881 78433881 C T TENM4 Missense_Mutation p.R1211H 0.21 tolerated(0.3) benign(0.425) TCGA-D7-A6EY-01 11 82909605 82909605 G A ANKRD42 Intron 0.23 TCGA-D7-A6EY-01 11 85468698 85468698 G A SYTL2 Missense_Mutation p.A24V 0.11 deleterious(0.05) benign(0.021) TCGA-D7-A6EY-01 11 85725960 85725960 T - PICALM Frame_Shift_Del p.T167Lfs*26 0.16 TCGA-D7-A6EY-01 11 88242070 88242070 G A GRM5 Missense_Mutation p.T1110M 0.17 tolerated_low_confidence(0.05) probably_damaging(0.999) TCGA-D7-A6EY-01 11 9111258 9111258 A C SCUBE2 Missense_Mutation p.C84W 0.10 deleterious(0) probably_damaging(0.977) TCGA-D7-A6EY-01 11 9215216 9215216 A G DENND5A Missense_Mutation p.L321P 0.16 deleterious(0) probably_damaging(1) TCGA-D7-A6EY-01 11 92543235 92543235 C T FAT3 Silent p.P3158P 0.14 TCGA-D7-A6EY-01 11 93800808 93800808 C T HEPHL1 Missense_Mutation p.R319W 0.16 deleterious(0) probably_damaging(1) TCGA-D7-A6EY-01 11 94924679 94924679 C A SESN3 Missense_Mutation p.Q77H 0.20 tolerated(0.11) possibly_damaging(0.828) TCGA-D7-A6EY-01 11 994244 994244 T C AP2A2 Missense_Mutation p.V652A 0.16 tolerated(0.9) benign(0) TCGA-D7-A6EY-01 12 101333221 101333221 G - ANO4 Frame_Shift_Del p.G63Efs*58 0.16 TCGA-D7-A6EY-01 12 104155148 104155148 A G STAB2 Missense_Mutation p.H2440R 0.22 deleterious(0) probably_damaging(0.999) TCGA-D7-A6EY-01 12 104335416 104335416 C T HSP90B1 Missense_Mutation p.R414C 0.16 deleterious(0) probably_damaging(0.991) TCGA-D7-A6EY-01 12 104519899 104519899 G A NFYB Missense_Mutation p.T75M 0.16 deleterious(0.05) benign(0.05) TCGA-D7-A6EY-01 12 10532376 10532376 A - KLRK1 Frame_Shift_Del p.F55Sfs*7 0.30 TCGA-D7-A6EY-01 12 109186436 109186436 G - SSH1 Frame_Shift_Del p.L507Sfs*62 0.15 TCGA-D7-A6EY-01 12 109194657 109194657 A - SSH1 Frame_Shift_Del p.P350Lfs*30 0.15 TCGA-D7-A6EY-01 12 109684178 109684178 C T ACACB Silent p.G1832G 0.09 TCGA-D7-A6EY-01 12 109717586 109717586 T C FOXN4 Missense_Mutation p.T482A 0.16 deleterious(0.02) probably_damaging(0.927) TCGA-D7-A6EY-01 12 109889607 109889607 G A KCTD10 Silent p.P245P 0.20 TCGA-D7-A6EY-01 12 110293504 110293504 G T GLTP Missense_Mutation p.L123I 0.13 deleterious(0.05) benign(0.049) TCGA-D7-A6EY-01 12 110788137 110788137 T G ATP2A2 3'Flank 0.24 TCGA-D7-A6EY-01 12 110929813 110929813 A T VPS29 Silent p.P186P 0.18 TCGA-D7-A6EY-01 12 112229918 112229918 C A ALDH2 Silent p.T283T 0.13 TCGA-D7-A6EY-01 12 112654721 112654721 G A HECTD4 Missense_Mutation p.P2268L 0.16 possibly_damaging(0.787) TCGA-D7-A6EY-01 12 113543654 113543654 C T RASAL1 Silent p.S566S 0.20 TCGA-D7-A6EY-01 12 113565960 113565960 A T RASAL1 Missense_Mutation p.L49Q 0.13 deleterious(0) probably_damaging(0.998) TCGA-D7-A6EY-01 12 113873175 113873175 T C SDSL Missense_Mutation p.L162P 0.35 deleterious(0) probably_damaging(1) TCGA-D7-A6EY-01 12 117681194 117681194 T - NOS1 Frame_Shift_Del p.K991Rfs*93 0.25 TCGA-D7-A6EY-01 12 118599792 118599792 G A TAOK3 Missense_Mutation p.A647V 0.06 tolerated(0.07) benign(0.094) TCGA-D7-A6EY-01 12 120599364 120599364 T - GCN1L1 Frame_Shift_Del p.K789Rfs*4 0.16 TCGA-D7-A6EY-01 12 122218895 122218895 C T RHOF Silent p.T118T 0.08 TCGA-D7-A6EY-01 12 122359307 122359307 A C WDR66 Missense_Mutation p.E32D 0.15 deleterious_low_confidence(0.02) benign(0.042) TCGA-D7-A6EY-01 12 123187303 123187303 C T HCAR2 Silent p.L176L 0.22 TCGA-D7-A6EY-01 12 123355557 123355557 G T VPS37B Missense_Mutation p.L55M 0.19 deleterious(0) probably_damaging(0.999) TCGA-D7-A6EY-01 12 124950766 124950766 C T NCOR2 Missense_Mutation p.E220K 0.26 unknown(0) TCGA-D7-A6EY-01 12 125621344 125621344 C T AACS Silent p.D605D 0.13 TCGA-D7-A6EY-01 12 131283099 131283100 - T STX2 Frame_Shift_Ins p.A253Sfs*111 0.19 TCGA-D7-A6EY-01 12 132238940 132238940 C - SFSWAP Frame_Shift_Del p.P452Rfs*8 0.18 TCGA-D7-A6EY-01 12 133304629 133304629 C T ANKLE2 Silent p.S868S 0.21 TCGA-D7-A6EY-01 12 133418030 133418030 G A CHFR 3'UTR 0.12 TCGA-D7-A6EY-01 12 14778829 14778829 T - GUCY2C Frame_Shift_Del p.N757Mfs*8 0.21 TCGA-D7-A6EY-01 12 15131004 15131004 C T PDE6H Missense_Mutation p.R20C 0.10 tolerated_low_confidence(0.07) possibly_damaging(0.861) TCGA-D7-A6EY-01 12 15654731 15654731 C A PTPRO Missense_Mutation p.S280Y 0.21 deleterious_low_confidence(0) possibly_damaging(0.653) TCGA-D7-A6EY-01 12 19410381 19410381 A - PLEKHA5 Frame_Shift_Del p.V152Ffs*33 0.17 TCGA-D7-A6EY-01 12 21712605 21712605 T - GYS2 Frame_Shift_Del p.K403Nfs*7 0.24 TCGA-D7-A6EY-01 12 22063140 22063140 A G ABCC9 Missense_Mutation p.L424P 0.08 deleterious(0) probably_damaging(0.993) TCGA-D7-A6EY-01 12 22408309 22408309 C T ST8SIA1 Silent p.Q132Q 0.12 TCGA-D7-A6EY-01 12 22487142 22487142 G A ST8SIA1 Nonsense_Mutation p.R9* 0.23 TCGA-D7-A6EY-01 12 24736562 24736562 A - LINC00477 RNA 0.29 TCGA-D7-A6EY-01 12 26275580 26275580 C G BHLHE41 Missense_Mutation p.G290R 0.32 tolerated(0.41) unknown(0) TCGA-D7-A6EY-01 12 27840397 27840397 A G PPFIBP1 Missense_Mutation p.N782S 0.13 deleterious(0) possibly_damaging(0.744) TCGA-D7-A6EY-01 12 2997144 2997144 C T RHNO1 Missense_Mutation p.A79V 0.17 tolerated(0.08) benign(0.018) TCGA-D7-A6EY-01 12 4409106 4409106 C T CCND2 Silent p.D267D 0.24 TCGA-D7-A6EY-01 12 45567322 45567322 G A PLEKHA8P1 RNA 0.19 TCGA-D7-A6EY-01 12 46315821 46315821 G A SCAF11 3'UTR 0.18 TCGA-D7-A6EY-01 12 48104614 48104614 C T ENDOU Missense_Mutation p.A402T 0.28 deleterious(0.03) probably_damaging(0.998) TCGA-D7-A6EY-01 12 48132503 48132503 T C RAPGEF3 Silent p.L832L 0.09 TCGA-D7-A6EY-01 12 49162414 49162415 - C ADCY6 Frame_Shift_Ins p.E1156Gfs*23 0.29 TCGA-D7-A6EY-01 12 49420109 49420109 G A KMT2D Missense_Mutation p.R5214C 0.26 unknown(0) TCGA-D7-A6EY-01 12 49447831 49447831 G A KMT2D Silent p.S201S 0.24 TCGA-D7-A6EY-01 12 49920083 49920083 T C SPATS2 3'UTR 0.10 TCGA-D7-A6EY-01 12 49996976 49996976 C T FAM186B Missense_Mutation p.R166K 0.23 tolerated(0.53) benign(0.027) TCGA-D7-A6EY-01 12 50501870 50501870 C T GPD1 Missense_Mutation p.R304W 0.22 deleterious(0.02) benign(0.39) TCGA-D7-A6EY-01 12 51402362 51402362 A G SLC11A2 Missense_Mutation p.I56T 0.14 tolerated(0.41) benign(0.005) TCGA-D7-A6EY-01 12 5154747 5154747 G A KCNA5 Missense_Mutation p.M478I 0.14 deleterious(0) probably_damaging(0.989) TCGA-D7-A6EY-01 12 52404705 52404705 G A GRASP Missense_Mutation p.G113S 0.19 deleterious(0) probably_damaging(0.998) TCGA-D7-A6EY-01 12 52886929 52886929 C T KRT6A Missense_Mutation p.R15H 0.11 tolerated(0.28) unknown(0) TCGA-D7-A6EY-01 12 52967153 52967153 G A KRT74 Missense_Mutation p.R137C 0.23 deleterious(0.01) benign(0.117) TCGA-D7-A6EY-01 12 53227696 53227696 C T KRT79 Missense_Mutation p.V117I 0.05 deleterious(0.01) probably_damaging(0.991) TCGA-D7-A6EY-01 12 53345404 53345404 A T KRT18 Missense_Mutation p.E266V 0.10 deleterious(0) possibly_damaging(0.905) TCGA-D7-A6EY-01 12 53666523 53666523 T A ESPL1 Nonsense_Mutation p.L463* 0.20 TCGA-D7-A6EY-01 12 56397531 56397531 G T SUOX Missense_Mutation p.G120W 0.22 deleterious(0) probably_damaging(1) TCGA-D7-A6EY-01 12 56489493 56489493 T A ERBB3 Missense_Mutation p.V653E 0.13 deleterious(0.01) benign(0.036) TCGA-D7-A6EY-01 12 56492321 56492321 T C ERBB3 Missense_Mutation p.F885S 0.07 deleterious(0.01) probably_damaging(0.997) TCGA-D7-A6EY-01 12 56630405 56630405 A G SLC39A5 Missense_Mutation p.H361R 0.13 tolerated(0.68) benign(0.109) TCGA-D7-A6EY-01 12 56846858 56846858 A G MIP Missense_Mutation p.W202R 0.21 deleterious(0) probably_damaging(1) TCGA-D7-A6EY-01 12 56866478 56866478 G A GLS2 Nonsense_Mutation p.R503* 0.27 TCGA-D7-A6EY-01 12 57113614 57113614 G A NACA Missense_Mutation p.P567L 0.09 tolerated_low_confidence(0.05) possibly_damaging(0.851) TCGA-D7-A6EY-01 12 57493106 57493106 T C STAT6 Missense_Mutation p.K621R 0.10 deleterious(0) probably_damaging(0.997) TCGA-D7-A6EY-01 12 57493155 57493155 G A STAT6 Nonsense_Mutation p.R605* 0.20 TCGA-D7-A6EY-01 12 57588842 57588842 A G LRP1 Missense_Mutation p.S2756G 0.12 benign(0.122) TCGA-D7-A6EY-01 12 57589752 57589752 C T LRP1 Silent p.D2889D 0.14 TCGA-D7-A6EY-01 12 57592031 57592031 C A LRP1 Silent p.T3125T 0.15 TCGA-D7-A6EY-01 12 57642910 57642910 T C STAC3 Missense_Mutation p.K83R 0.15 tolerated(0.43) benign(0) TCGA-D7-A6EY-01 12 58158323 58158323 G A CYP27B1 Missense_Mutation p.T325M 0.16 deleterious(0) probably_damaging(1) TCGA-D7-A6EY-01 12 58174307 58174307 G A METTL21B Missense_Mutation p.G187R 0.36 tolerated(0.46) benign(0.026) TCGA-D7-A6EY-01 12 6204656 6204656 T C VWF Silent p.S209S 0.19 TCGA-D7-A6EY-01 12 64456870 64456870 G A SRGAP1 Silent p.A325A 0.21 TCGA-D7-A6EY-01 12 64812690 64812690 G A XPOT Missense_Mutation p.R102Q 0.20 tolerated(0.09) probably_damaging(0.948) TCGA-D7-A6EY-01 12 662790 662790 G A B4GALNT3 Silent p.S567S 0.06 TCGA-D7-A6EY-01 12 69085796 69085796 C T NUP107 Missense_Mutation p.R118C 0.19 deleterious(0.02) possibly_damaging(0.696) TCGA-D7-A6EY-01 12 6939061 6939063 CTT - GPR162 3'Flank 0.16 TCGA-D7-A6EY-01 12 7047777 7047777 G A ATN1 Missense_Mutation p.R884H 0.17 probably_damaging(0.996) TCGA-D7-A6EY-01 12 7050172 7050172 G A ATN1 Missense_Mutation p.R1115H 0.16 probably_damaging(0.997) TCGA-D7-A6EY-01 12 70671919 70671919 C T CNOT2 5'UTR 0.29 TCGA-D7-A6EY-01 12 72278612 72278612 G T TBC1D15 Missense_Mutation p.G122V 0.16 tolerated(0.15) possibly_damaging(0.748) TCGA-D7-A6EY-01 12 78571018 78571018 C T NAV3 Missense_Mutation p.P1741L 0.19 deleterious(0) probably_damaging(1) TCGA-D7-A6EY-01 12 7867837 7867837 C T DPPA3 Silent p.N47N 0.25 TCGA-D7-A6EY-01 12 80660352 80660352 G A OTOGL Silent p.P773P 0.12 TCGA-D7-A6EY-01 12 81610701 81610701 C T ACSS3 Missense_Mutation p.A459V 0.16 deleterious(0) probably_damaging(0.976) TCGA-D7-A6EY-01 12 8902524 8902524 C A RIMKLB Missense_Mutation p.P81H 0.11 deleterious(0.05) possibly_damaging(0.873) TCGA-D7-A6EY-01 12 94543551 94543551 G A PLXNC1 Silent p.A268A 0.22 TCGA-D7-A6EY-01 12 95422176 95422176 T C NR2C1 Silent p.V506V 0.10 TCGA-D7-A6EY-01 12 95535227 95535228 - AGT FGD6 In_Frame_Ins p.Y924dup 0.14 TCGA-D7-A6EY-01 12 96259873 96259873 T A SNRPF 3'UTR 0.18 TCGA-D7-A6EY-01 12 96348701 96348702 CA - AMDHD1 Frame_Shift_Del p.H89Sfs*6 0.12 TCGA-D7-A6EY-01 13 106142384 106142384 A G DAOA Missense_Mutation p.D139G 0.44 deleterious_low_confidence(0) possibly_damaging(0.728) TCGA-D7-A6EY-01 13 107145763 107145763 G A EFNB2 Silent p.D209D 0.06 TCGA-D7-A6EY-01 13 108518531 108518531 G A FAM155A Silent p.G138G 0.12 TCGA-D7-A6EY-01 13 113812994 113812994 T C PROZ Missense_Mutation p.L7P 0.22 deleterious_low_confidence(0) probably_damaging(0.955) TCGA-D7-A6EY-01 13 20412966 20412966 T C ZMYM5 Missense_Mutation p.K249R 0.11 tolerated(0.07) possibly_damaging(0.486) TCGA-D7-A6EY-01 13 21555716 21555716 C - LATS2 Frame_Shift_Del p.D852Tfs*3 0.26 TCGA-D7-A6EY-01 13 23928788 23928788 G A SACS Missense_Mutation p.L655F 0.15 probably_damaging(0.997) TCGA-D7-A6EY-01 13 24515468 24515468 T - ANKRD20A19P RNA 0.16 TCGA-D7-A6EY-01 13 25029208 25029208 G A PARP4 Missense_Mutation p.A902V 0.19 tolerated(0.39) benign(0.34) TCGA-D7-A6EY-01 13 26788260 26788260 G A RNF6 Missense_Mutation p.R587C 0.24 deleterious(0) probably_damaging(0.999) TCGA-D7-A6EY-01 13 32823682 32823682 G A FRY Missense_Mutation p.R2343Q 0.10 deleterious(0.01) possibly_damaging(0.669) TCGA-D7-A6EY-01 13 40268775 40268775 G A COG6 Missense_Mutation p.R360Q 0.21 deleterious(0) probably_damaging(1) TCGA-D7-A6EY-01 13 44433981 44433981 A G CCDC122 Missense_Mutation p.Y128H 0.09 deleterious(0) probably_damaging(1) TCGA-D7-A6EY-01 13 45725872 45725872 A - GTF2F2 Frame_Shift_Del p.K71Nfs*23 0.15 TCGA-D7-A6EY-01 13 45983198 45983198 T G SLC25A30 Missense_Mutation p.I26L 0.26 tolerated(0.08) benign(0.181) TCGA-D7-A6EY-01 13 53286891 53286891 A G LECT1 Silent p.G194G 0.11 TCGA-D7-A6EY-01 13 58208729 58208729 G A PCDH17 Silent p.S683S 0.19 TCGA-D7-A6EY-01 13 67800017 67800017 T G PCDH9 Missense_Mutation p.Q852H 0.15 deleterious(0.02) probably_damaging(0.997) TCGA-D7-A6EY-01 13 75911143 75911143 T A TBC1D4 Missense_Mutation p.T549S 0.24 tolerated(0.72) benign(0.006) TCGA-D7-A6EY-01 13 77631192 77631192 G A MYCBP2 Missense_Mutation p.R4418W 0.15 possibly_damaging(0.636) TCGA-D7-A6EY-01 13 78202088 78202088 G T SCEL Missense_Mutation p.Q545H 0.12 deleterious(0) probably_damaging(0.919) TCGA-D7-A6EY-01 13 79175619 79175619 G A POU4F1 Silent p.N397N 0.08 TCGA-D7-A6EY-01 13 95264512 95264512 T - GPR180 Frame_Shift_Del p.Y126Mfs*26 0.15 TCGA-D7-A6EY-01 14 100402386 100402386 G T EML1 Missense_Mutation p.G663C 0.06 deleterious(0.02) probably_damaging(0.998) TCGA-D7-A6EY-01 14 102391511 102391511 G A PPP2R5C Missense_Mutation p.A524T 0.21 tolerated_low_confidence(0.12) benign(0.008) TCGA-D7-A6EY-01 14 102516130 102516130 A C DYNC1H1 Missense_Mutation p.N4532T 0.16 benign(0.3) TCGA-D7-A6EY-01 14 103447137 103447137 G A CDC42BPB Silent p.D371D 0.17 TCGA-D7-A6EY-01 14 104056525 104056525 T C APOPT1 Missense_Mutation p.Y175H 0.09 deleterious(0.01) probably_damaging(1) TCGA-D7-A6EY-01 14 104573194 104573194 C T ASPG Missense_Mutation p.A411V 0.18 tolerated(0.15) benign(0.048) TCGA-D7-A6EY-01 14 105406513 105406513 A G AHNAK2 Missense_Mutation p.V5092A 0.20 benign(0.097) TCGA-D7-A6EY-01 14 105693010 105693010 G - BRF1 Frame_Shift_Del p.S293Rfs*11 0.18 TCGA-D7-A6EY-01 14 105995526 105995526 G C TMEM121 Missense_Mutation p.V119L 0.31 tolerated(0.11) benign(0.082) TCGA-D7-A6EY-01 14 20847140 20847140 C T TEP1 Missense_Mutation p.R1751Q 0.19 deleterious(0.01) probably_damaging(0.978) TCGA-D7-A6EY-01 14 21467544 21467544 C A SLC39A2 5'UTR 0.24 TCGA-D7-A6EY-01 14 21542367 21542367 G A ARHGEF40 Missense_Mutation p.G160S 0.23 tolerated(0.59) benign(0.012) TCGA-D7-A6EY-01 14 21860365 21860365 A C CHD8 Intron 0.08 TCGA-D7-A6EY-01 14 21868426 21868426 T - CHD8 Frame_Shift_Del p.V1538* 0.08 TCGA-D7-A6EY-01 14 21966442 21966442 C A METTL3 Missense_Mutation p.R568M 0.10 deleterious(0.03) possibly_damaging(0.781) TCGA-D7-A6EY-01 14 22181007 22181007 G A TRAV2 Silent p.S93S 0.18 TCGA-D7-A6EY-01 14 22934767 22934767 A C TRDC 3'UTR 0.21 TCGA-D7-A6EY-01 14 23311827 23311827 G A MMP14 Missense_Mutation p.G197S 0.19 deleterious(0.02) probably_damaging(1) TCGA-D7-A6EY-01 14 23313912 23313912 A G MMP14 Silent p.R408R 0.12 TCGA-D7-A6EY-01 14 23391719 23391719 C A PRMT5 Missense_Mutation p.E543D 0.15 tolerated(0.42) benign(0.013) TCGA-D7-A6EY-01 14 23511754 23511754 T C PSMB11 Missense_Mutation p.V107A 0.09 tolerated(0.09) benign(0.164) TCGA-D7-A6EY-01 14 23892782 23892782 C T MYH7 Missense_Mutation p.V1025I 0.20 tolerated(0.43) benign(0.007) TCGA-D7-A6EY-01 14 24624887 24624887 C T RNF31 Missense_Mutation p.R827C 0.21 deleterious(0) probably_damaging(0.935) TCGA-D7-A6EY-01 14 24910108 24910108 G A SDR39U1 Missense_Mutation p.A118V 0.24 tolerated(0.22) benign(0.005) TCGA-D7-A6EY-01 14 31763206 31763206 T G RP11-596D21.1 Intron 0.33 TCGA-D7-A6EY-01 14 35264883 35264883 T G BAZ1A Missense_Mutation p.D406A 0.12 deleterious(0) probably_damaging(0.968) TCGA-D7-A6EY-01 14 39565321 39565321 A G SEC23A Translation_Start_Site p.M1? 0.19 deleterious(0) probably_damaging(0.986) TCGA-D7-A6EY-01 14 42355861 42355861 T A LRFN5 Silent p.I11I 0.27 TCGA-D7-A6EY-01 14 50809753 50809753 G T CDKL1 Intron 0.18 TCGA-D7-A6EY-01 14 51290059 51290059 A - NIN Intron 0.22 TCGA-D7-A6EY-01 14 53177883 53177883 T A PSMC6 Missense_Mutation p.M122K 0.08 deleterious(0) probably_damaging(0.953) TCGA-D7-A6EY-01 14 53513552 53513552 A - DDHD1 Frame_Shift_Del p.L880Ffs*2 0.10 TCGA-D7-A6EY-01 14 55531410 55531410 T C MAPK1IP1L 3'UTR 0.16 TCGA-D7-A6EY-01 14 57268654 57268654 A G OTX2 Silent p.G231G 0.23 TCGA-D7-A6EY-01 14 63174814 63174814 T - KCNH5 Frame_Shift_Del p.K793Nfs*9 0.23 TCGA-D7-A6EY-01 14 64416693 64416693 C A SYNE2 Missense_Mutation p.L187I 0.08 probably_damaging(0.946) TCGA-D7-A6EY-01 14 64682920 64682920 G A SYNE2 Intron 0.16 TCGA-D7-A6EY-01 14 64727199 64727199 A G ESR2 Missense_Mutation p.V307A 0.17 deleterious(0) possibly_damaging(0.899) TCGA-D7-A6EY-01 14 65009431 65009431 A G HSPA2 Missense_Mutation p.S622G 0.22 tolerated_low_confidence(1) benign(0) TCGA-D7-A6EY-01 14 67815817 67815817 T C ATP6V1D Missense_Mutation p.T82A 0.08 tolerated(0.82) benign(0.014) TCGA-D7-A6EY-01 14 68114795 68114795 A G ARG2 Missense_Mutation p.I252V 0.28 tolerated(0.73) benign(0.424) TCGA-D7-A6EY-01 14 68221792 68221792 T G ZFYVE26 Missense_Mutation p.K2321T 0.12 tolerated(0.22) benign(0.152) TCGA-D7-A6EY-01 14 72191386 72191386 G T SIPA1L1 Splice_Site p.X1504_splice 0.22 TCGA-D7-A6EY-01 14 72205763 72205763 C T SIPA1L1 Missense_Mutation p.A1767V 0.10 tolerated(0.12) probably_damaging(0.972) TCGA-D7-A6EY-01 14 72936763 72936763 A G RGS6 Missense_Mutation p.I170V 0.17 tolerated(0.1) benign(0.135) TCGA-D7-A6EY-01 14 74041708 74041708 G A ACOT2 Missense_Mutation p.V315I 0.31 tolerated(0.59) benign(0.002) TCGA-D7-A6EY-01 14 74194173 74194173 A G ELMSAN1 Missense_Mutation p.V717A 0.10 tolerated(0.05) probably_damaging(0.98) TCGA-D7-A6EY-01 14 74398252 74398252 T C ZNF410 3'UTR 0.13 TCGA-D7-A6EY-01 14 79746449 79746449 T C NRXN3 Intron 0.38 TCGA-D7-A6EY-01 14 81609785 81609785 C T TSHR Silent p.F461F 0.21 TCGA-D7-A6EY-01 14 81659127 81659127 A G GTF2A1 Silent p.P223P 0.11 TCGA-D7-A6EY-01 14 91247167 91247167 G A TTC7B Silent p.Y120Y 0.18 TCGA-D7-A6EY-01 14 91787503 91787503 G A CCDC88C Silent p.C496C 0.25 TCGA-D7-A6EY-01 14 94546087 94546087 A G DDX24 Translation_Start_Site p.M1? 0.11 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-D7-A6EY-01 14 94718175 94718175 T G PPP4R4 Missense_Mutation p.C603G 0.16 tolerated(0.67) possibly_damaging(0.553) TCGA-D7-A6EY-01 14 94914663 94914663 C T SERPINA11 Missense_Mutation p.R150Q 0.08 tolerated(0.59) benign(0.004) TCGA-D7-A6EY-01 14 95569830 95569830 C T DICER1 Silent p.L1301L 0.16 TCGA-D7-A6EY-01 14 96706659 96706659 A G BDKRB2 Intron 0.18 TCGA-D7-A6EY-01 14 97321591 97321591 C T VRK1 Missense_Mutation p.R203W 0.20 deleterious(0) possibly_damaging(0.792) TCGA-D7-A6EY-01 15 25315599 25315599 A - SNORD116-8 RNA 0.12 TCGA-D7-A6EY-01 15 27017881 27017881 G A GABRB3 Missense_Mutation p.T40M 0.37 deleterious(0) probably_damaging(0.976) TCGA-D7-A6EY-01 15 31197927 31197927 G A FAN1 Missense_Mutation p.S354N 0.15 tolerated(0.51) benign(0.004) TCGA-D7-A6EY-01 15 31359302 31359303 - C TRPM1 Frame_Shift_Ins p.I212Hfs*5 0.21 TCGA-D7-A6EY-01 15 39874929 39874929 G - THBS1 Frame_Shift_Del p.G203Afs*13 0.24 TCGA-D7-A6EY-01 15 40700167 40700167 C T IVD Silent p.G91G 0.23 TCGA-D7-A6EY-01 15 41555004 41555004 G A CHP1 Missense_Mutation p.R91H 0.17 deleterious(0) probably_damaging(0.926) TCGA-D7-A6EY-01 15 42059287 42059287 G A MGA Missense_Mutation p.A3003T 0.20 tolerated(0.18) benign(0.003) TCGA-D7-A6EY-01 15 42139594 42139594 G A PLA2G4B Silent p.S900S 0.19 TCGA-D7-A6EY-01 15 42192866 42192866 T A EHD4 Nonsense_Mutation p.K535* 0.15 TCGA-D7-A6EY-01 15 42457942 42457942 A T VPS39 Missense_Mutation p.F585I 0.21 tolerated(0.43) benign(0.133) TCGA-D7-A6EY-01 15 42641675 42641675 C A GANC Missense_Mutation p.S838Y 0.19 benign(0.022) TCGA-D7-A6EY-01 15 43548763 43548763 C A TGM5 Intron 0.08 TCGA-D7-A6EY-01 15 43622719 43622719 C T LCMT2 5'UTR 0.17 TCGA-D7-A6EY-01 15 43658906 43658906 G A ZSCAN29 Silent p.G208G 0.10 TCGA-D7-A6EY-01 15 44102107 44102107 T C MFAP1 Missense_Mutation p.E298G 0.23 deleterious(0.03) benign(0.099) TCGA-D7-A6EY-01 15 44858099 44858099 G A SPG11 Missense_Mutation p.R2318C 0.15 deleterious(0.01) benign(0.193) TCGA-D7-A6EY-01 15 44876563 44876563 C T SPG11 Missense_Mutation p.R1772H 0.08 deleterious(0.05) benign(0.252) TCGA-D7-A6EY-01 15 45007753 45007753 A - B2M Frame_Shift_Del p.V69Wfs*34 0.22 TCGA-D7-A6EY-01 15 45668934 45668934 T G GATM Silent p.A51A 0.24 TCGA-D7-A6EY-01 15 48434400 48434400 T - SLC24A5 Frame_Shift_Del p.L454* 0.16 TCGA-D7-A6EY-01 15 51240349 51240349 G T AP4E1 Missense_Mutation p.A437S 0.11 deleterious(0) possibly_damaging(0.609) TCGA-D7-A6EY-01 15 52194104 52194104 A T TMOD3 Missense_Mutation p.T299S 0.14 tolerated(0.45) benign(0.115) TCGA-D7-A6EY-01 15 53082076 53082076 G A ONECUT1 Silent p.N2N 0.24 TCGA-D7-A6EY-01 15 53997240 53997240 G T WDR72 Silent p.T431T 0.06 TCGA-D7-A6EY-01 15 56923914 56923917 AACT - ZNF280D Frame_Shift_Del p.S907Lfs*14 0.23 TCGA-D7-A6EY-01 15 59009803 59009803 A - ADAM10 Frame_Shift_Del p.L60Yfs*3 0.15 TCGA-D7-A6EY-01 15 62945497 62945497 G A TLN2 Silent p.L167L 0.10 TCGA-D7-A6EY-01 15 63883060 63883060 A G USP3 3'UTR 0.22 TCGA-D7-A6EY-01 15 64419432 64419432 C T SNX1 Missense_Mutation p.R238W 0.18 deleterious(0.04) possibly_damaging(0.823) TCGA-D7-A6EY-01 15 65447360 65447360 T C CLPX Silent p.A457A 0.12 TCGA-D7-A6EY-01 15 65458981 65458981 A G CLPX Silent p.P167P 0.26 TCGA-D7-A6EY-01 15 66191139 66191139 C T MEGF11 Silent p.S967S 0.14 TCGA-D7-A6EY-01 15 67665746 67665746 G T IQCH Missense_Mutation p.R449S 0.12 deleterious(0) probably_damaging(0.999) TCGA-D7-A6EY-01 15 71197048 71197049 - T LRRC49 Frame_Shift_Ins p.S158Ffs*42 0.19 TCGA-D7-A6EY-01 15 74911648 74911648 G A CLK3 Silent p.P185P 0.16 TCGA-D7-A6EY-01 15 75131055 75131055 A G ULK3 Missense_Mutation p.L344P 0.29 deleterious(0) probably_damaging(1) TCGA-D7-A6EY-01 15 75137387 75137387 G A SCAMP2 3'UTR 0.11 TCGA-D7-A6EY-01 15 75648256 75648256 C T MAN2C1 Silent p.P1055P 0.22 TCGA-D7-A6EY-01 15 75942629 75942629 A G SNX33 Missense_Mutation p.S396G 0.31 tolerated(0.08) benign(0.082) TCGA-D7-A6EY-01 15 76189396 76189396 A - UBE2Q2 Frame_Shift_Del p.N365Mfs*25 0.09 TCGA-D7-A6EY-01 15 77025671 77025673 CAT - SCAPER In_Frame_Del p.D640del 0.19 TCGA-D7-A6EY-01 15 77236173 77236173 T C RCN2 Silent p.F174F 0.20 TCGA-D7-A6EY-01 15 77471152 77471152 C A PEAK1 Missense_Mutation p.Q1039H 0.24 tolerated(0.11) benign(0.004) TCGA-D7-A6EY-01 15 78768646 78768646 T C IREB2 Silent p.A380A 0.26 TCGA-D7-A6EY-01 15 79059229 79059229 G A ADAMTS7 Silent p.S1008S 0.10 TCGA-D7-A6EY-01 15 82564107 82564107 A - FAM154B Frame_Shift_Del p.G75Efs*35 0.18 TCGA-D7-A6EY-01 15 83805312 83805312 T - TM6SF1 Frame_Shift_Del p.L336* 0.20 TCGA-D7-A6EY-01 15 83932799 83932799 G A BNC1 Missense_Mutation p.R402W 0.21 deleterious(0.01) probably_damaging(1) TCGA-D7-A6EY-01 15 85634360 85634360 A - PDE8A Frame_Shift_Del p.K269Rfs*8 0.12 TCGA-D7-A6EY-01 15 86124320 86124320 G A AKAP13 Silent p.L1007L 0.15 TCGA-D7-A6EY-01 15 86284609 86284609 C T AKAP13 Silent p.Y2651Y 0.20 TCGA-D7-A6EY-01 15 86312183 86312183 A C KLHL25 Missense_Mutation p.C287G 0.22 deleterious(0.05) benign(0.177) TCGA-D7-A6EY-01 15 89876439 89876439 C - POLG Frame_Shift_Del p.E183Rfs*83 0.23 TCGA-D7-A6EY-01 15 90802111 90802111 G A TTLL13 Missense_Mutation p.R435Q 0.13 tolerated(0.13) benign(0.065) TCGA-D7-A6EY-01 15 90903714 90903714 C T ZNF774 Silent p.S217S 0.16 TCGA-D7-A6EY-01 15 91169093 91169093 A T CRTC3 Missense_Mutation p.N279Y 0.18 deleterious(0) probably_damaging(0.982) TCGA-D7-A6EY-01 15 91811773 91811773 C T SV2B Silent p.G437G 0.09 TCGA-D7-A6EY-01 15 99491899 99491899 C T IGF1R Silent p.G1228G 0.06 TCGA-D7-A6EY-01 15 99673025 99673025 G A SYNM Missense_Mutation p.R1486H 0.16 tolerated(0.39) benign(0.009) TCGA-D7-A6EY-01 16 111433 111433 C T RHBDF1 Missense_Mutation p.E449K 0.16 deleterious(0) probably_damaging(0.998) TCGA-D7-A6EY-01 16 12162925 12162925 G A SNX29 Missense_Mutation p.G419R 0.10 deleterious(0.02) benign(0.003) TCGA-D7-A6EY-01 16 1396490 1396490 T C BAIAP3 Silent p.P882P 0.25 TCGA-D7-A6EY-01 16 1416381 1416381 G A UNKL Missense_Mutation p.R635C 0.12 deleterious(0.04) possibly_damaging(0.806) TCGA-D7-A6EY-01 16 1451628 1451628 C A UNKL Missense_Mutation p.G180V 0.21 deleterious(0) benign(0.018) TCGA-D7-A6EY-01 16 15978017 15978017 T G FOPNL Missense_Mutation p.K25T 0.14 deleterious(0) probably_damaging(0.964) TCGA-D7-A6EY-01 16 1652483 1652483 G A IFT140 Missense_Mutation p.T86M 0.21 tolerated(0.15) benign(0.029) TCGA-D7-A6EY-01 16 19883185 19883185 C T GPRC5B Missense_Mutation p.R328Q 0.17 tolerated(0.1) probably_damaging(0.996) TCGA-D7-A6EY-01 16 202930 202930 A G HBZ Missense_Mutation p.R8G 0.10 deleterious(0.03) benign(0.138) TCGA-D7-A6EY-01 16 20975852 20975852 C T DNAH3 Silent p.A3118A 0.17 TCGA-D7-A6EY-01 16 21031017 21031017 A G DNAH3 Missense_Mutation p.M1984T 0.23 tolerated(0.76) benign(0) TCGA-D7-A6EY-01 16 2120492 2120492 G A TSC2 Silent p.T584T 0.17 TCGA-D7-A6EY-01 16 21273443 21273443 T C CRYM Missense_Mutation p.D237G 0.12 tolerated(0.05) possibly_damaging(0.522) TCGA-D7-A6EY-01 16 21655611 21655611 T G IGSF6 Missense_Mutation p.K178N 0.08 deleterious(0.01) possibly_damaging(0.856) TCGA-D7-A6EY-01 16 22320326 22320326 C T POLR3E Silent p.D82D 0.09 TCGA-D7-A6EY-01 16 2257280 2257280 C T MLST8 Silent p.P169P 0.13 TCGA-D7-A6EY-01 16 22587939 22587939 T C RP11-368J21.3 RNA 0.08 TCGA-D7-A6EY-01 16 2259686 2259686 T A BRICD5 Missense_Mutation p.S154C 0.05 deleterious(0.04) possibly_damaging(0.698) TCGA-D7-A6EY-01 16 23652886 23652888 ACA - DCTN5 In_Frame_Del p.N9del 0.20 TCGA-D7-A6EY-01 16 2367744 2367744 G T ABCA3 Missense_Mutation p.L299I 0.24 deleterious(0) probably_damaging(0.99) TCGA-D7-A6EY-01 16 24268070 24268070 A C CACNG3 5'UTR 0.07 TCGA-D7-A6EY-01 16 24807240 24807240 A - TNRC6A Frame_Shift_Del p.R1183Gfs*7 0.21 TCGA-D7-A6EY-01 16 2580411 2580411 G A CEMP1 Missense_Mutation p.L222F 0.21 deleterious_low_confidence(0) possibly_damaging(0.765) TCGA-D7-A6EY-01 16 27363879 27363879 A G IL4R Missense_Mutation p.T178A 0.20 deleterious(0.01) benign(0.082) TCGA-D7-A6EY-01 16 27506203 27506203 G A GTF3C1 Missense_Mutation p.R887C 0.17 deleterious(0) probably_damaging(1) TCGA-D7-A6EY-01 16 2814058 2814058 A G SRRM2 Missense_Mutation p.T1177A 0.08 benign(0.184) TCGA-D7-A6EY-01 16 2814676 2814676 A G SRRM2 Missense_Mutation p.S1383G 0.09 benign(0.184) TCGA-D7-A6EY-01 16 2871562 2871562 T - PRSS21 Frame_Shift_Del p.F302Sfs*17 0.18 TCGA-D7-A6EY-01 16 28845493 28845495 CTC - ATXN2L In_Frame_Del p.S712del 0.11 TCGA-D7-A6EY-01 16 2949098 2949098 C T FLYWCH2 Missense_Mutation p.A124V 0.12 tolerated_low_confidence(0.23) benign(0.034) TCGA-D7-A6EY-01 16 2983494 2983494 G A FLYWCH1 Missense_Mutation p.R386Q 0.32 tolerated(0.12) benign(0.001) TCGA-D7-A6EY-01 16 30081398 30081398 G A ALDOA Intron 0.20 TCGA-D7-A6EY-01 16 3024104 3024104 A C PKMYT1 Missense_Mutation p.W403G 0.18 deleterious(0.04) probably_damaging(0.997) TCGA-D7-A6EY-01 16 304581 304581 T - ITFG3 Frame_Shift_Del p.L58Sfs*27 0.19 TCGA-D7-A6EY-01 16 30581188 30581188 G A ZNF688 3'UTR 0.15 TCGA-D7-A6EY-01 16 30666199 30666199 T A PRR14 Missense_Mutation p.V303D 0.07 deleterious(0) probably_damaging(0.98) TCGA-D7-A6EY-01 16 30749490 30749490 C T SRCAP Missense_Mutation p.S2710L 0.23 unknown(0) TCGA-D7-A6EY-01 16 30793803 30793803 A G ZNF629 Missense_Mutation p.S616P 0.30 tolerated(0.34) benign(0) TCGA-D7-A6EY-01 16 31106713 31106713 A G VKORC1 5'Flank 0.27 TCGA-D7-A6EY-01 16 31123662 31123662 G A BCKDK 3'UTR 0.32 TCGA-D7-A6EY-01 16 31151942 31151942 G - PRSS36 Frame_Shift_Del p.L680Wfs*6 0.28 TCGA-D7-A6EY-01 16 3191181 3191181 G A ZNF213 Missense_Mutation p.D405N 0.26 deleterious(0) benign(0.001) TCGA-D7-A6EY-01 16 3349406 3349408 AAG - TIGD7 In_Frame_Del p.L403del 0.19 TCGA-D7-A6EY-01 16 335160 335160 T G PDIA2 Missense_Mutation p.V252G 0.25 tolerated(0.28) benign(0.008) TCGA-D7-A6EY-01 16 3487150 3487150 T - ZNF597 Frame_Shift_Del p.K183Nfs*17 0.16 TCGA-D7-A6EY-01 16 3779497 3779497 G T CREBBP Missense_Mutation p.R1851S 0.09 unknown(0) TCGA-D7-A6EY-01 16 4163993 4163993 A G ADCY9 Missense_Mutation p.V484A 0.22 deleterious(0) probably_damaging(0.999) TCGA-D7-A6EY-01 16 4311902 4311902 C T TFAP4 Missense_Mutation p.E135K 0.17 deleterious(0.03) benign(0.28) TCGA-D7-A6EY-01 16 450249 450249 G - NME4 Frame_Shift_Del p.A159Pfs*15 0.30 TCGA-D7-A6EY-01 16 4504854 4504854 G A DNAJA3 Missense_Mutation p.R461H 0.19 tolerated(0.09) benign(0.163) TCGA-D7-A6EY-01 16 457459 457459 G A DECR2 Missense_Mutation p.R79H 0.12 tolerated(0.17) benign(0.022) TCGA-D7-A6EY-01 16 46638005 46638005 C T SHCBP1 Missense_Mutation p.R325H 0.25 tolerated(0.05) possibly_damaging(0.488) TCGA-D7-A6EY-01 16 49430375 49430375 C T C16orf78 Missense_Mutation p.R146W 0.14 deleterious(0.01) benign(0) TCGA-D7-A6EY-01 16 49672395 49672395 T C ZNF423 Missense_Mutation p.K223R 0.21 deleterious(0.05) probably_damaging(0.987) TCGA-D7-A6EY-01 16 50733771 50733771 T C NOD2 Missense_Mutation p.V149A 0.08 deleterious(0.01) probably_damaging(0.957) TCGA-D7-A6EY-01 16 511424 511424 C T RAB11FIP3 Silent p.Y245Y 0.19 TCGA-D7-A6EY-01 16 55857537 55857537 C A CES1 Missense_Mutation p.G155V 0.08 deleterious(0.01) probably_damaging(0.972) TCGA-D7-A6EY-01 16 57470614 57470614 T C CIAPIN1 Missense_Mutation p.K114R 0.25 tolerated(0.13) benign(0.071) TCGA-D7-A6EY-01 16 57790353 57790353 T C KATNB1 Missense_Mutation p.S602P 0.09 deleterious(0.01) probably_damaging(0.956) TCGA-D7-A6EY-01 16 57994752 57994753 - T CNGB1 Frame_Shift_Ins p.S176Ifs*3 0.11 TCGA-D7-A6EY-01 16 58562480 58562480 A T CNOT1 Missense_Mutation p.C2118S 0.20 deleterious(0) probably_damaging(0.965) TCGA-D7-A6EY-01 16 58592417 58592417 A G CNOT1 Silent p.T764T 0.15 TCGA-D7-A6EY-01 16 61891051 61891051 C A CDH8 Missense_Mutation p.Q213H 0.18 tolerated(0.06) probably_damaging(0.993) TCGA-D7-A6EY-01 16 633170 633170 T C PIGQ Missense_Mutation p.C607R 0.09 deleterious_low_confidence(0) benign(0.088) TCGA-D7-A6EY-01 16 66420974 66420974 C T CDH5 Missense_Mutation p.A158V 0.15 tolerated(0.13) possibly_damaging(0.576) TCGA-D7-A6EY-01 16 66885451 66885451 T - CA7 Frame_Shift_Del p.L150Wfs*10 0.14 TCGA-D7-A6EY-01 16 66887506 66887506 A G CA7 3'UTR 0.29 TCGA-D7-A6EY-01 16 67516576 67516576 T C AGRP Missense_Mutation p.K121R 0.14 tolerated(0.09) probably_damaging(0.999) TCGA-D7-A6EY-01 16 67699032 67699032 C A ENKD1 Missense_Mutation p.R107L 0.16 deleterious(0) probably_damaging(0.997) TCGA-D7-A6EY-01 16 67859964 67859964 T C TSNAXIP1 Missense_Mutation p.W323R 0.07 deleterious(0) probably_damaging(1) TCGA-D7-A6EY-01 16 67865164 67865164 C T CENPT Missense_Mutation p.G220S 0.14 deleterious(0.05) possibly_damaging(0.878) TCGA-D7-A6EY-01 16 67912921 67912921 T A EDC4 Missense_Mutation p.I450N 0.24 deleterious(0) possibly_damaging(0.779) TCGA-D7-A6EY-01 16 67984390 67984390 G A SLC12A4 Silent p.G489G 0.24 TCGA-D7-A6EY-01 16 68845667 68845667 C A CDH1 Missense_Mutation p.L305I 0.12 tolerated(0.17) benign(0.037) TCGA-D7-A6EY-01 16 69353327 69353328 - C VPS4A Frame_Shift_Ins p.G170Wfs*37 0.21 TCGA-D7-A6EY-01 16 703538 703538 C T WDR90 Missense_Mutation p.A416V 0.21 deleterious(0) possibly_damaging(0.627) TCGA-D7-A6EY-01 16 715651 715651 C - WDR90 Intron 0.13 TCGA-D7-A6EY-01 16 74339455 74339455 C T PSMD7 Missense_Mutation p.R267C 0.14 deleterious(0) probably_damaging(0.999) TCGA-D7-A6EY-01 16 75513474 75513474 C T CHST6 Missense_Mutation p.A85T 0.18 deleterious(0.01) probably_damaging(0.977) TCGA-D7-A6EY-01 16 75690320 75690320 A - TERF2IP Frame_Shift_Del p.N339Ifs*12 0.16 TCGA-D7-A6EY-01 16 76389240 76389240 G A CNTNAP4 Silent p.V49V 0.12 TCGA-D7-A6EY-01 16 77353960 77353960 C T ADAMTS18 Missense_Mutation p.G773D 0.15 deleterious(0) probably_damaging(0.996) TCGA-D7-A6EY-01 16 78143722 78143722 T G WWOX Missense_Mutation p.F74V 0.12 tolerated(0.6) benign(0.004) TCGA-D7-A6EY-01 16 783400 783400 C T NARFL Missense_Mutation p.V241I 0.10 tolerated(0.08) benign(0.176) TCGA-D7-A6EY-01 16 81293328 81293328 A G BCMO1 Missense_Mutation p.T81A 0.11 tolerated(1) benign(0) TCGA-D7-A6EY-01 16 816088 816088 C T MSLN Missense_Mutation p.R309C 0.11 deleterious(0.03) benign(0.289) TCGA-D7-A6EY-01 16 817404 817404 G A MSLN Silent p.A518A 0.17 TCGA-D7-A6EY-01 16 81740617 81740617 A T CMIP Splice_Site p.X733_splice 0.05 TCGA-D7-A6EY-01 16 81990400 81990400 G A PLCG2 Missense_Mutation p.R1224H 0.08 tolerated(0.32) possibly_damaging(0.878) TCGA-D7-A6EY-01 16 84695317 84695317 C T KLHL36 Missense_Mutation p.R477W 0.21 deleterious(0.02) probably_damaging(0.937) TCGA-D7-A6EY-01 16 84778966 84778966 G - USP10 Frame_Shift_Del p.G294Vfs*17 0.11 TCGA-D7-A6EY-01 16 87730193 87730193 C T JPH3 Missense_Mutation p.A725V 0.09 deleterious(0.01) benign(0.415) TCGA-D7-A6EY-01 16 88705624 88705624 G T IL17C Missense_Mutation p.R81M 0.22 deleterious(0.05) possibly_damaging(0.711) TCGA-D7-A6EY-01 16 88891252 88891252 T C GALNS Missense_Mutation p.T389A 0.27 tolerated(0.27) benign(0.034) TCGA-D7-A6EY-01 16 89348343 89348343 T C ANKRD11 Missense_Mutation p.D1536G 0.19 benign(0.145) TCGA-D7-A6EY-01 16 89348687 89348687 T A ANKRD11 Missense_Mutation p.E1421D 0.17 benign(0.007) TCGA-D7-A6EY-01 16 89350985 89350985 T A ANKRD11 Missense_Mutation p.K655N 0.05 benign(0.19) TCGA-D7-A6EY-01 16 89724045 89724045 T A CHMP1A 5'UTR 0.17 TCGA-D7-A6EY-01 16 89805284 89805284 C T FANCA Intron 0.11 TCGA-D7-A6EY-01 17 10296257 10296257 A G MYH8 Missense_Mutation p.M1785T 0.11 deleterious(0.02) possibly_damaging(0.799) TCGA-D7-A6EY-01 17 12626278 12626278 A - MYOCD Frame_Shift_Del p.N125Tfs*9 0.11 TCGA-D7-A6EY-01 17 16323473 16323473 C T TRPV2 Missense_Mutation p.A82V 0.13 tolerated(0.21) benign(0.022) TCGA-D7-A6EY-01 17 17719529 17719529 A T SREBF1 Missense_Mutation p.F766I 0.19 deleterious(0) probably_damaging(0.945) TCGA-D7-A6EY-01 17 18166173 18166173 G - MIEF2 Frame_Shift_Del p.V58* 0.12 TCGA-D7-A6EY-01 17 18814472 18814472 C T PRPSAP2 Missense_Mutation p.A214V 0.22 tolerated(0.33) benign(0.016) TCGA-D7-A6EY-01 17 2202995 2202995 C T SMG6 Missense_Mutation p.R351H 0.07 tolerated_low_confidence(0.17) benign(0.005) TCGA-D7-A6EY-01 17 2290871 2290871 C T MNT Missense_Mutation p.R358H 0.18 deleterious(0.05) probably_damaging(0.991) TCGA-D7-A6EY-01 17 26820745 26820745 C A SLC13A2 Silent p.T394T 0.28 TCGA-D7-A6EY-01 17 26969888 26969888 T C KIAA0100 Missense_Mutation p.R172G 0.08 tolerated(0.1) benign(0.111) TCGA-D7-A6EY-01 17 27022421 27022421 A G SUPT6H Missense_Mutation p.S1276G 0.09 deleterious(0.04) benign(0.208) TCGA-D7-A6EY-01 17 27208843 27208843 G A FLOT2 Silent p.A301A 0.11 TCGA-D7-A6EY-01 17 27210148 27210148 C A FLOT2 Missense_Mutation p.E108D 0.12 deleterious(0.01) possibly_damaging(0.836) TCGA-D7-A6EY-01 17 27889521 27889521 C - ABHD15 3'UTR 0.11 TCGA-D7-A6EY-01 17 27903235 27903236 CA - GIT1 Splice_Site p.X546_splice 0.17 TCGA-D7-A6EY-01 17 29161911 29161912 - A ATAD5 Frame_Shift_Ins p.S273Kfs*6 0.15 TCGA-D7-A6EY-01 17 29687536 29687538 TTG - NF1 In_Frame_Del p.V2732del 0.26 TCGA-D7-A6EY-01 17 30349562 30349562 C T LRRC37B Missense_Mutation p.A466V 0.17 tolerated(0.11) benign(0) TCGA-D7-A6EY-01 17 30594937 30594937 T G RHBDL3 Missense_Mutation p.F43C 0.12 tolerated(0.06) benign(0.003) TCGA-D7-A6EY-01 17 33255998 33255998 T - CCT6B Frame_Shift_Del p.K502Nfs*9 0.09 TCGA-D7-A6EY-01 17 33318078 33318078 T - LIG3 Frame_Shift_Del p.F330Sfs*16 0.16 TCGA-D7-A6EY-01 17 33323127 33323127 C T LIG3 Silent p.G552G 0.20 TCGA-D7-A6EY-01 17 33495121 33495121 C T UNC45B Missense_Mutation p.A398V 0.16 tolerated(0.19) possibly_damaging(0.824) TCGA-D7-A6EY-01 17 33586620 33586620 C T SLFN5 Missense_Mutation p.A304V 0.14 tolerated(0.22) possibly_damaging(0.737) TCGA-D7-A6EY-01 17 36499264 36499264 C T GPR179 Missense_Mutation p.V137M 0.10 tolerated(0.07) benign(0.053) TCGA-D7-A6EY-01 17 37879601 37879601 T A ERBB2 Missense_Mutation p.V659D 0.08 deleterious(0.01) probably_damaging(0.918) TCGA-D7-A6EY-01 17 37881392 37881392 A G ERBB2 Missense_Mutation p.T862A 0.05 deleterious(0) probably_damaging(0.968) TCGA-D7-A6EY-01 17 38818255 38818255 C A KRT222 Missense_Mutation p.E46D 0.18 deleterious(0.03) probably_damaging(0.982) TCGA-D7-A6EY-01 17 39019472 39019472 G A KRT12 Missense_Mutation p.R407C 0.29 tolerated(0.27) benign(0.132) TCGA-D7-A6EY-01 17 39134454 39134454 A C KRT40 Missense_Mutation p.L431V 0.25 tolerated_low_confidence(1) benign(0) TCGA-D7-A6EY-01 17 39140442 39140442 G A KRT40 Silent p.S28S 0.14 TCGA-D7-A6EY-01 17 3968022 3968022 T A ZZEF1 Missense_Mutation p.S1451C 0.09 deleterious(0.04) benign(0.246) TCGA-D7-A6EY-01 17 40332934 40332934 C T KCNH4 Silent p.P10P 0.19 TCGA-D7-A6EY-01 17 40362446 40362447 - T STAT5B Frame_Shift_Ins p.H584Tfs*8 0.21 TCGA-D7-A6EY-01 17 40557269 40557269 C T PTRF Silent p.S203S 0.17 TCGA-D7-A6EY-01 17 40957798 40957800 AAG - CNTD1 In_Frame_Del p.E161del 0.18 TCGA-D7-A6EY-01 17 41606991 41606991 G A ETV4 Missense_Mutation p.R337C 0.26 deleterious(0) probably_damaging(0.999) TCGA-D7-A6EY-01 17 43227536 43227536 C T HEXIM1 Silent p.L327L 0.19 TCGA-D7-A6EY-01 17 43531274 43531274 G - PLEKHM1 Frame_Shift_Del p.E649Rfs*62 0.26 TCGA-D7-A6EY-01 17 45368454 45368454 G A ITGB3 Silent p.T420T 0.05 TCGA-D7-A6EY-01 17 45913838 45913838 C T LRRC46 Nonsense_Mutation p.R198* 0.36 TCGA-D7-A6EY-01 17 45914497 45914497 A G LRRC46 3'UTR 0.07 TCGA-D7-A6EY-01 17 45916296 45916296 A G SCRN2 Silent p.H211H 0.07 TCGA-D7-A6EY-01 17 46128992 46128992 T G NFE2L1 Splice_Site p.X170_splice 0.23 TCGA-D7-A6EY-01 17 4688653 4688653 C G VMO1 3'UTR 0.09 TCGA-D7-A6EY-01 17 48166586 48166586 A C ITGA3 Missense_Mutation p.K1053T 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-D7-A6EY-01 17 4850151 4850151 G A PFN1 Intron 0.18 TCGA-D7-A6EY-01 17 48646247 48646247 A G CACNA1G Missense_Mutation p.S87G 0.08 deleterious(0) probably_damaging(0.963) TCGA-D7-A6EY-01 17 48683419 48683419 A G CACNA1G Intron 0.10 TCGA-D7-A6EY-01 17 48742573 48742573 C T ABCC3 Silent p.N466N 0.15 TCGA-D7-A6EY-01 17 48778049 48778049 T C ANKRD40 Missense_Mutation p.N55D 0.15 deleterious(0.01) probably_damaging(0.973) TCGA-D7-A6EY-01 17 48917696 48917696 G T WFIKKN2 Missense_Mutation p.Q349H 0.07 deleterious(0.01) probably_damaging(0.914) TCGA-D7-A6EY-01 17 53155491 53155491 G A STXBP4 Missense_Mutation p.R414Q 0.07 deleterious(0) probably_damaging(0.992) TCGA-D7-A6EY-01 17 54981616 54981616 C T TRIM25 Silent p.E309E 0.08 TCGA-D7-A6EY-01 17 55917298 55917298 T C MRPS23 Splice_Site p.X141_splice 0.21 TCGA-D7-A6EY-01 17 59489855 59489855 A T C17orf82 Missense_Mutation p.E173D 0.23 tolerated_low_confidence(0.4) benign(0.388) TCGA-D7-A6EY-01 17 60742222 60742222 T C MRC2 Silent p.P144P 0.10 TCGA-D7-A6EY-01 17 63010659 63010659 C T GNA13 Missense_Mutation p.V284I 0.16 tolerated(0.23) benign(0.375) TCGA-D7-A6EY-01 17 63533583 63533583 A T AXIN2 Missense_Mutation p.V524D 0.17 tolerated(0.26) benign(0.165) TCGA-D7-A6EY-01 17 65184691 65184691 A C HELZ Silent p.A302A 0.05 TCGA-D7-A6EY-01 17 66303599 66303599 G A ARSG 5'UTR 0.06 TCGA-D7-A6EY-01 17 6903748 6903748 G A ALOX12 Missense_Mutation p.V301I 0.23 deleterious(0.05) benign(0.044) TCGA-D7-A6EY-01 17 7077305 7077305 C T ASGR1 Missense_Mutation p.G226R 0.19 deleterious(0) probably_damaging(0.988) TCGA-D7-A6EY-01 17 71232449 71232449 A T C17orf80 Missense_Mutation p.E276D 0.12 tolerated(0.1) possibly_damaging(0.554) TCGA-D7-A6EY-01 17 7123931 7123931 G T ACADVL Missense_Mutation p.K94N 0.11 tolerated(0.27) possibly_damaging(0.735) TCGA-D7-A6EY-01 17 71418542 71418542 C A SDK2 Silent p.V643V 0.13 TCGA-D7-A6EY-01 17 7218402 7218402 G A GPS2 5'UTR 0.33 TCGA-D7-A6EY-01 17 72440035 72440035 T C GPRC5C Missense_Mutation p.L422P 0.09 deleterious(0) possibly_damaging(0.899) TCGA-D7-A6EY-01 17 7296656 7296656 C T TMEM256-PLSCR3 Missense_Mutation p.R105Q 0.12 tolerated(0.13) benign(0.034) TCGA-D7-A6EY-01 17 73094211 73094211 G A SLC16A5 Missense_Mutation p.G93D 0.42 deleterious(0) probably_damaging(0.996) TCGA-D7-A6EY-01 17 7329696 7329696 G A C17orf74 Missense_Mutation p.R129H 0.17 tolerated(0.37) probably_damaging(0.923) TCGA-D7-A6EY-01 17 7369945 7369945 A G ZBTB4 Missense_Mutation p.L59P 0.08 unknown(0) TCGA-D7-A6EY-01 17 73847693 73847693 A G WBP2 Missense_Mutation p.F42L 0.24 tolerated(0.22) benign(0.1) TCGA-D7-A6EY-01 17 73888403 73888403 T C TRIM65 Missense_Mutation p.H230R 0.11 deleterious(0.02) benign(0.005) TCGA-D7-A6EY-01 17 7492805 7492805 G A SOX15 Missense_Mutation p.R64C 0.32 deleterious_low_confidence(0) probably_damaging(1) TCGA-D7-A6EY-01 17 7611436 7611436 C - EFNB3 Frame_Shift_Del p.P96Lfs*62 0.24 TCGA-D7-A6EY-01 17 76166922 76166922 T C SYNGR2 Missense_Mutation p.C42R 0.16 deleterious(0) probably_damaging(1) TCGA-D7-A6EY-01 17 76219623 76219623 T C BIRC5 Silent p.A162A 0.50 TCGA-D7-A6EY-01 17 76471533 76471533 C T DNAH17 Missense_Mutation p.V2766M 0.26 benign(0.025) TCGA-D7-A6EY-01 17 76989803 76989803 C T CANT1 Silent p.S345S 0.39 TCGA-D7-A6EY-01 17 7758956 7758956 G A TMEM88 Missense_Mutation p.R135H 0.16 tolerated(0.17) probably_damaging(0.923) TCGA-D7-A6EY-01 17 77758904 77758904 A G CBX2 3'UTR 0.12 TCGA-D7-A6EY-01 17 78321601 78321601 G A RNF213 Missense_Mutation p.V3156I 0.14 benign(0.036) TCGA-D7-A6EY-01 17 7843489 7843489 C T CNTROB Missense_Mutation p.R414W 0.28 deleterious(0.01) possibly_damaging(0.901) TCGA-D7-A6EY-01 17 79207194 79207194 C A ENTHD2 Intron 0.38 TCGA-D7-A6EY-01 17 79792786 79792786 T C PPP1R27 Missense_Mutation p.Q15R 0.09 tolerated(0.49) benign(0.023) TCGA-D7-A6EY-01 17 79857371 79857371 T C ANAPC11 Silent p.L121L 0.20 TCGA-D7-A6EY-01 17 79910898 79910898 A G NOTUM Missense_Mutation p.V477A 0.05 tolerated(0.12) benign(0.001) TCGA-D7-A6EY-01 17 80043164 80043165 - G FASN Frame_Shift_Ins p.I1413Hfs*22 0.16 TCGA-D7-A6EY-01 17 80274674 80274674 T G CD7 Missense_Mutation p.D89A 0.06 tolerated(0.57) benign(0.023) TCGA-D7-A6EY-01 17 80332343 80332343 T A UTS2R Missense_Mutation p.L48Q 0.20 tolerated(0.07) benign(0.058) TCGA-D7-A6EY-01 17 80400468 80400468 A G HEXDC Nonstop_Mutation p.*586Wext*11 0.08 TCGA-D7-A6EY-01 17 80401836 80401836 A G C17orf62 3'UTR 0.08 TCGA-D7-A6EY-01 17 8110514 8110514 G A AURKB Silent p.I126I 0.10 TCGA-D7-A6EY-01 17 8159913 8159913 A C PFAS Missense_Mutation p.Q298P 0.21 tolerated(0.26) benign(0.005) TCGA-D7-A6EY-01 17 8383629 8383629 G A MYH10 Missense_Mutation p.T1799I 0.19 possibly_damaging(0.553) TCGA-D7-A6EY-01 17 8791602 8791602 C T PIK3R5 Missense_Mutation p.R501H 0.18 deleterious(0.04) benign(0.048) TCGA-D7-A6EY-01 18 13825821 13825821 C T MC5R Silent p.G19G 0.27 TCGA-D7-A6EY-01 18 22806910 22806910 T - ZNF521 Frame_Shift_Del p.E324Dfs*70 0.23 TCGA-D7-A6EY-01 18 23937693 23937693 G A TAF4B Missense_Mutation p.A786T 0.18 deleterious(0) probably_damaging(1) TCGA-D7-A6EY-01 18 28991213 28991213 T C DSG4 Silent p.Y738Y 0.23 TCGA-D7-A6EY-01 18 33706484 33706484 C A SLC39A6 Missense_Mutation p.G163W 0.17 deleterious(0.01) possibly_damaging(0.888) TCGA-D7-A6EY-01 18 34853110 34853110 G A CELF4 Missense_Mutation p.A273V 0.13 tolerated(0.05) probably_damaging(0.995) TCGA-D7-A6EY-01 18 3502440 3502440 A G DLGAP1 Intron 0.22 TCGA-D7-A6EY-01 18 43496050 43496050 A G EPG5 Missense_Mutation p.M1169T 0.15 deleterious(0) possibly_damaging(0.774) TCGA-D7-A6EY-01 18 47796137 47796137 G A MBD1 Silent p.T610T 0.33 TCGA-D7-A6EY-01 18 48255583 48255583 G A MAPK4 Missense_Mutation p.A375T 0.09 tolerated_low_confidence(0.57) benign(0) TCGA-D7-A6EY-01 18 52571503 52571503 C T CCDC68 3'UTR 0.15 TCGA-D7-A6EY-01 18 5397249 5397249 C A EPB41L3 Missense_Mutation p.Q883H 0.13 tolerated_low_confidence(0.1) benign(0.177) TCGA-D7-A6EY-01 18 54694328 54694328 G A WDR7 Missense_Mutation p.A1455T 0.13 tolerated(0.29) probably_damaging(0.993) TCGA-D7-A6EY-01 18 55247367 55247367 G T FECH Silent p.A44A 0.06 TCGA-D7-A6EY-01 18 60241909 60241909 G A ZCCHC2 Silent p.T865T 0.12 TCGA-D7-A6EY-01 18 60985761 60985761 C T BCL2 Missense_Mutation p.G47S 0.32 tolerated(0.39) benign(0.002) TCGA-D7-A6EY-01 18 67563064 67563064 G A CD226 Silent p.S200S 0.20 TCGA-D7-A6EY-01 18 72344920 72344920 T C ZNF407 Silent p.L649L 0.20 TCGA-D7-A6EY-01 18 72632589 72632589 A C ZNF407 Missense_Mutation p.N1790T 0.29 deleterious(0.02) probably_damaging(0.999) TCGA-D7-A6EY-01 18 72913423 72913423 T - ZADH2 Frame_Shift_Del p.N361Tfs*6 0.19 TCGA-D7-A6EY-01 18 74090902 74090902 T A ZNF516 Missense_Mutation p.D1056V 0.13 deleterious(0) probably_damaging(0.997) TCGA-D7-A6EY-01 18 76755442 76755442 A G SALL3 Missense_Mutation p.T1151A 0.29 deleterious(0) probably_damaging(0.92) TCGA-D7-A6EY-01 18 8378288 8378288 C T PTPRM Missense_Mutation p.A1163V 0.14 deleterious(0.01) probably_damaging(0.951) TCGA-D7-A6EY-01 18 8806949 8806949 C T SOGA2 Missense_Mutation p.A832V 0.13 tolerated(0.38) benign(0.005) TCGA-D7-A6EY-01 19 1005179 1005179 G A GRIN3B Missense_Mutation p.R560Q 0.09 tolerated(0.08) benign(0.047) TCGA-D7-A6EY-01 19 10259645 10259645 A G DNMT1 Missense_Mutation p.Y879H 0.07 deleterious(0) probably_damaging(0.951) TCGA-D7-A6EY-01 19 10398394 10398394 T C ICAM4 Missense_Mutation p.L167P 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.766) TCGA-D7-A6EY-01 19 10444093 10444093 C T RAVER1 Missense_Mutation p.A48T 0.17 tolerated(0.31) benign(0) TCGA-D7-A6EY-01 19 10465245 10465245 C T TYK2 Silent p.A886A 0.06 TCGA-D7-A6EY-01 19 1054088 1054088 G A ABCA7 Missense_Mutation p.A1186T 0.19 tolerated(0.38) benign(0.004) TCGA-D7-A6EY-01 19 10625152 10625152 A G S1PR5 Missense_Mutation p.L179P 0.23 deleterious(0) probably_damaging(1) TCGA-D7-A6EY-01 19 10694742 10694742 A G AP1M2 Missense_Mutation p.L16S 0.24 deleterious(0) probably_damaging(0.978) TCGA-D7-A6EY-01 19 10787940 10787940 G A ILF3 Silent p.L171L 0.22 TCGA-D7-A6EY-01 19 11304488 11304488 T C KANK2 Missense_Mutation p.N90D 0.15 deleterious(0.03) benign(0.034) TCGA-D7-A6EY-01 19 11505033 11505033 A G RGL3 3'UTR 0.06 TCGA-D7-A6EY-01 19 11541818 11541818 A - CCDC151 Frame_Shift_Del p.F89Lfs*27 0.21 TCGA-D7-A6EY-01 19 11664579 11664579 G A ELOF1 Silent p.C78C 0.17 TCGA-D7-A6EY-01 19 12781601 12781601 A C WDR83 Missense_Mutation p.S158R 0.17 deleterious(0) probably_damaging(0.918) TCGA-D7-A6EY-01 19 12874103 12874103 T G HOOK2 Missense_Mutation p.K718T 0.18 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-D7-A6EY-01 19 12875861 12875861 T G HOOK2 Silent p.R559R 0.06 TCGA-D7-A6EY-01 19 1295646 1295646 G A EFNA2 Silent p.P81P 0.26 TCGA-D7-A6EY-01 19 13007123 13007123 C - GCDH Frame_Shift_Del p.R249Gfs*15 0.09 TCGA-D7-A6EY-01 19 1425903 1425903 G A DAZAP1 Missense_Mutation p.E164K 0.14 deleterious(0) unknown(0) TCGA-D7-A6EY-01 19 1430254 1430254 C - DAZAP1 Frame_Shift_Del p.P257Rfs*78 0.19 TCGA-D7-A6EY-01 19 14707965 14707965 G A CLEC17A Missense_Mutation p.R213Q 0.28 tolerated(0.83) benign(0.006) TCGA-D7-A6EY-01 19 15079239 15079239 C T SLC1A6 Missense_Mutation p.A142T 0.12 deleterious(0) benign(0.257) TCGA-D7-A6EY-01 19 1619184 1619184 A G TCF3 Missense_Mutation p.M459T 0.21 tolerated(0.17) benign(0.002) TCGA-D7-A6EY-01 19 16222674 16222674 G T RAB8A 5'UTR 0.15 TCGA-D7-A6EY-01 19 16495978 16495978 T C EPS15L1 Missense_Mutation p.S737G 0.17 tolerated(0.31) benign(0.002) TCGA-D7-A6EY-01 19 16620764 16620764 C T C19orf44 Missense_Mutation p.T535M 0.08 deleterious(0) probably_damaging(0.979) TCGA-D7-A6EY-01 19 17366213 17366214 - C USHBP1 Frame_Shift_Ins p.D558Gfs*20 0.09 TCGA-D7-A6EY-01 19 1785607 1785607 T C ATP8B3 Missense_Mutation p.H1085R 0.09 deleterious(0.02) possibly_damaging(0.852) TCGA-D7-A6EY-01 19 17942133 17942133 G A JAK3 Missense_Mutation p.A961V 0.23 tolerated(0.26) benign(0.135) TCGA-D7-A6EY-01 19 18311206 18311206 C T RAB3A Missense_Mutation p.R93Q 0.10 deleterious(0) probably_damaging(0.987) TCGA-D7-A6EY-01 19 18546592 18546592 G A ISYNA1 Missense_Mutation p.T372M 0.22 tolerated(0.06) benign(0.002) TCGA-D7-A6EY-01 19 1880893 1880893 A G ABHD17A Splice_Site p.X162_splice 0.24 TCGA-D7-A6EY-01 19 18870897 18870897 C A CRTC1 Missense_Mutation p.L265M 0.05 deleterious(0) probably_damaging(1) TCGA-D7-A6EY-01 19 18976945 18976945 C T UPF1 Silent p.G1110G 0.14 TCGA-D7-A6EY-01 19 19447980 19447980 A T MAU2 Missense_Mutation p.N121I 0.10 tolerated(0.07) possibly_damaging(0.87) TCGA-D7-A6EY-01 19 2043141 2043141 A C MKNK2 Missense_Mutation p.F159V 0.09 deleterious(0) benign(0.328) TCGA-D7-A6EY-01 19 2118678 2118678 G A AP3D1 Silent p.G545G 0.21 TCGA-D7-A6EY-01 19 30165133 30165133 C T PLEKHF1 Silent p.C129C 0.11 TCGA-D7-A6EY-01 19 30500155 30500155 C T URI1 Silent p.D310D 0.23 TCGA-D7-A6EY-01 19 31767888 31767888 C G TSHZ3 Missense_Mutation p.R937S 0.16 deleterious(0) probably_damaging(0.954) TCGA-D7-A6EY-01 19 31770119 31770119 C T TSHZ3 Missense_Mutation p.V194M 0.16 deleterious(0) probably_damaging(1) TCGA-D7-A6EY-01 19 33579129 33579129 G A GPATCH1 Missense_Mutation p.G55R 0.08 deleterious(0) probably_damaging(0.999) TCGA-D7-A6EY-01 19 34263784 34263784 C T CHST8 Missense_Mutation p.A364V 0.20 tolerated(0.09) probably_damaging(0.99) TCGA-D7-A6EY-01 19 35630989 35630989 G A FXYD1 Silent p.A2A 0.18 TCGA-D7-A6EY-01 19 36210709 36210709 C T KMT2B Missense_Mutation p.R154C 0.15 unknown(0) TCGA-D7-A6EY-01 19 36322039 36322039 T G NPHS1 Missense_Mutation p.T1133P 0.10 deleterious(0.04) benign(0.037) TCGA-D7-A6EY-01 19 36357367 36357367 C T KIRREL2 Silent p.S700S 0.14 TCGA-D7-A6EY-01 19 37130626 37130626 A - ZNF461 Frame_Shift_Del p.F207Lfs*58 0.15 TCGA-D7-A6EY-01 19 3734377 3734377 A C TJP3 Silent p.P319P 0.11 TCGA-D7-A6EY-01 19 37733610 37733610 A G ZNF383 Missense_Mutation p.T158A 0.11 tolerated(0.1) benign(0.159) TCGA-D7-A6EY-01 19 37854555 37854555 T C HKR1 Missense_Mutation p.S620P 0.15 deleterious(0.01) probably_damaging(0.987) TCGA-D7-A6EY-01 19 38028170 38028170 A G ZNF793 Missense_Mutation p.M204V 0.16 tolerated(0.16) benign(0) TCGA-D7-A6EY-01 19 38684260 38684260 C T SIPA1L3 Silent p.P1560P 0.20 TCGA-D7-A6EY-01 19 38931487 38931487 C T RYR1 Missense_Mutation p.P50S 0.22 benign(0.349) TCGA-D7-A6EY-01 19 38987143 38987143 A G RYR1 Missense_Mutation p.H2253R 0.06 benign(0.003) TCGA-D7-A6EY-01 19 39220032 39220032 A G ACTN4 Missense_Mutation p.K899R 0.08 tolerated(0.52) benign(0.224) TCGA-D7-A6EY-01 19 39667303 39667303 C T PAK4 Missense_Mutation p.T478M 0.20 deleterious(0) probably_damaging(1) TCGA-D7-A6EY-01 19 40827881 40827881 G - C19orf47 Frame_Shift_Del p.R393Gfs*19 0.11 TCGA-D7-A6EY-01 19 40895497 40895497 A G HIPK4 Missense_Mutation p.F105L 0.09 deleterious(0) probably_damaging(0.998) TCGA-D7-A6EY-01 19 41516003 41516003 C T CYP2B6 Silent p.Y309Y 0.10 TCGA-D7-A6EY-01 19 42583760 42583760 C T ZNF574 Silent p.G334G 0.16 TCGA-D7-A6EY-01 19 42585228 42585228 T C ZNF574 Missense_Mutation p.C824R 0.11 deleterious(0) probably_damaging(0.999) TCGA-D7-A6EY-01 19 42736274 42736274 G A GSK3A Missense_Mutation p.A438V 0.12 tolerated(0.23) benign(0.065) TCGA-D7-A6EY-01 19 42796825 42796825 T G CIC Missense_Mutation p.F1095V 0.12 possibly_damaging(0.879) TCGA-D7-A6EY-01 19 43268391 43268391 A T PSG8 Missense_Mutation p.V36D 0.22 deleterious(0) probably_damaging(0.99) TCGA-D7-A6EY-01 19 43430620 43430620 G A PSG7 Missense_Mutation p.R320C 0.07 tolerated(0.22) benign(0.116) TCGA-D7-A6EY-01 19 44096695 44096695 G - IRGQ Frame_Shift_Del p.P452Qfs*100 0.24 TCGA-D7-A6EY-01 19 44635701 44635701 C T ZNF225 Nonsense_Mutation p.R312* 0.20 TCGA-D7-A6EY-01 19 44662403 44662403 T - ZNF234 3'UTR 0.31 TCGA-D7-A6EY-01 19 45515294 45515294 G A RELB Silent p.A88A 0.16 TCGA-D7-A6EY-01 19 45868176 45868176 C T ERCC2 Missense_Mutation p.A172T 0.30 tolerated(0.14) benign(0.003) TCGA-D7-A6EY-01 19 46215461 46215461 C T FBXO46 Silent p.A431A 0.18 TCGA-D7-A6EY-01 19 4704208 4704208 G T DPP9 Missense_Mutation p.L179I 0.16 tolerated(0.46) possibly_damaging(0.9) TCGA-D7-A6EY-01 19 47421989 47421989 G T ARHGAP35 Silent p.V19V 0.18 TCGA-D7-A6EY-01 19 47588577 47588577 C A ZC3H4 Missense_Mutation p.R322L 0.23 unknown(0) TCGA-D7-A6EY-01 19 47858523 47858523 G A DHX34 Silent p.S311S 0.12 TCGA-D7-A6EY-01 19 47884214 47884214 G A DHX34 Missense_Mutation p.A1042T 0.19 tolerated(0.42) benign(0.003) TCGA-D7-A6EY-01 19 47960233 47960233 G A SLC8A2 Missense_Mutation p.R432C 0.14 tolerated(0.21) benign(0.006) TCGA-D7-A6EY-01 19 48800319 48800319 C T CCDC114 Missense_Mutation p.G643R 0.22 tolerated_low_confidence(0.19) benign(0.001) TCGA-D7-A6EY-01 19 48968065 48968065 C - KCNJ14 3'UTR 0.21 TCGA-D7-A6EY-01 19 48981328 48981328 G A CYTH2 Missense_Mutation p.G271S 0.17 tolerated(0.11) possibly_damaging(0.451) TCGA-D7-A6EY-01 19 49106838 49106838 G - FAM83E Frame_Shift_Del p.S364Afs*14 0.16 TCGA-D7-A6EY-01 19 49133085 49133085 A G SPHK2 3'UTR 0.14 TCGA-D7-A6EY-01 19 49254323 49254323 C T FUT1 Silent p.Q72Q 0.19 TCGA-D7-A6EY-01 19 49422025 49422025 C T NUCB1 Missense_Mutation p.A267V 0.14 deleterious(0.04) probably_damaging(1) TCGA-D7-A6EY-01 19 49507566 49507566 A T RUVBL2 Silent p.A52A 0.10 TCGA-D7-A6EY-01 19 49513070 49513070 A T RUVBL2 Missense_Mutation p.E167V 0.17 deleterious(0) probably_damaging(0.918) TCGA-D7-A6EY-01 19 49519922 49519922 C T LHB Missense_Mutation p.R22K 0.18 tolerated(0.68) benign(0.002) TCGA-D7-A6EY-01 19 49983865 49983865 A G FLT3LG 3'UTR 0.43 TCGA-D7-A6EY-01 19 51890410 51890410 C A LIM2 Missense_Mutation p.K96N 0.22 tolerated_low_confidence(0.45) benign(0.036) TCGA-D7-A6EY-01 19 52376178 52376178 T C ZNF577 Silent p.S355S 0.18 TCGA-D7-A6EY-01 19 52497089 52497089 A G ZNF615 Missense_Mutation p.C425R 0.09 tolerated(0.61) possibly_damaging(0.725) TCGA-D7-A6EY-01 19 52619685 52619685 A G ZNF616 Silent p.D244D 0.08 TCGA-D7-A6EY-01 19 53571351 53571351 G A ZNF160 Silent p.T812T 0.16 TCGA-D7-A6EY-01 19 53770112 53770112 A G VN1R4 Silent p.T269T 0.16 TCGA-D7-A6EY-01 19 53855133 53855133 G A ZNF845 Missense_Mutation p.R402H 0.15 tolerated(0.14) benign(0.029) TCGA-D7-A6EY-01 19 54327404 54327404 C T NLRP12 Missense_Mutation p.G9S 0.09 tolerated_low_confidence(0.22) benign(0.014) TCGA-D7-A6EY-01 19 55143553 55143553 G A LILRB1 Missense_Mutation p.G176R 0.23 deleterious(0.04) benign(0.039) TCGA-D7-A6EY-01 19 55174491 55174491 C A LILRB4 Silent p.I2I 0.13 TCGA-D7-A6EY-01 19 55570577 55570577 C T RDH13 Silent p.T44T 0.25 TCGA-D7-A6EY-01 19 55607456 55607456 G - PPP1R12C Frame_Shift_Del p.I373Sfs*51 0.19 TCGA-D7-A6EY-01 19 5684870 5684870 G - HSD11B1L Frame_Shift_Del p.A11Pfs*24 0.16 TCGA-D7-A6EY-01 19 57175758 57175758 C T ZNF835 Missense_Mutation p.R270H 0.22 deleterious(0) possibly_damaging(0.516) TCGA-D7-A6EY-01 19 57647396 57647396 T G ZIM3 Missense_Mutation p.E103D 0.05 tolerated(0.3) benign(0.003) TCGA-D7-A6EY-01 19 57746858 57746858 T - AURKC 3'UTR 0.24 TCGA-D7-A6EY-01 19 5783101 5783101 T G PRR22 Missense_Mutation p.K386T 0.09 tolerated(0.1) possibly_damaging(0.814) TCGA-D7-A6EY-01 19 58421256 58421256 A G ZNF417 Silent p.D130D 0.11 TCGA-D7-A6EY-01 19 5844264 5844264 G A FUT3 Missense_Mutation p.A196V 0.19 tolerated(1) benign(0.004) TCGA-D7-A6EY-01 19 58600183 58600183 G A ZSCAN18 Missense_Mutation p.A198V 0.15 tolerated(0.27) benign(0.365) TCGA-D7-A6EY-01 19 59074333 59074333 T A MZF1 Missense_Mutation p.E437D 0.10 deleterious(0.04) possibly_damaging(0.626) TCGA-D7-A6EY-01 19 59080616 59080616 T A MZF1 Intron 0.09 TCGA-D7-A6EY-01 19 6470366 6470366 G A DENND1C Silent p.G434G 0.50 TCGA-D7-A6EY-01 19 6479033 6479033 A G DENND1C Missense_Mutation p.F71L 0.10 deleterious(0) probably_damaging(0.999) TCGA-D7-A6EY-01 19 7585101 7585101 G T ZNF358 Missense_Mutation p.G325C 0.09 deleterious(0) probably_damaging(0.999) TCGA-D7-A6EY-01 19 7585312 7585321 GGGTGCATGA - ZNF358 Frame_Shift_Del p.H397Qfs*25 0.19 TCGA-D7-A6EY-01 19 7833781 7833781 G A CLEC4M Silent p.A369A 0.10 TCGA-D7-A6EY-01 19 8175836 8175836 G A FBN3 Missense_Mutation p.A1409V 0.24 tolerated(0.38) benign(0.005) TCGA-D7-A6EY-01 19 8657735 8657735 C A ADAMTS10 Missense_Mutation p.W500L 0.17 deleterious(0) benign(0.415) TCGA-D7-A6EY-01 19 9057431 9057431 T G MUC16 Missense_Mutation p.E10005D 0.17 unknown(0) TCGA-D7-A6EY-01 19 9062515 9062515 T C MUC16 Missense_Mutation p.M8311V 0.14 unknown(0) TCGA-D7-A6EY-01 19 9064309 9064310 - G MUC16 Frame_Shift_Ins p.S7713Lfs*40 0.20 TCGA-D7-A6EY-01 19 9067750 9067750 A G MUC16 Silent p.L6566L 0.10 TCGA-D7-A6EY-01 19 9087688 9087688 A G MUC16 Missense_Mutation p.L1376P 0.21 unknown(0) TCGA-D7-A6EY-01 19 9213598 9213599 - A OR7G2 Frame_Shift_Ins p.A129Cfs*14 0.15 TCGA-D7-A6EY-01 19 9325000 9325000 T C OR7D4 Missense_Mutation p.T172A 0.17 tolerated(0.19) probably_damaging(0.976) TCGA-D7-A6EY-01 1 100472647 100472647 A - SLC35A3 Frame_Shift_Del p.K135Nfs*10 0.13 TCGA-D7-A6EY-01 1 103540183 103540183 T G COL11A1 Missense_Mutation p.E214D 0.23 possibly_damaging(0.75) TCGA-D7-A6EY-01 1 108703903 108703903 A G SLC25A24 Silent p.D137D 0.13 TCGA-D7-A6EY-01 1 109446858 109446858 A G GPSM2 Missense_Mutation p.I392V 0.10 tolerated(0.56) benign(0) TCGA-D7-A6EY-01 1 109466819 109466819 A C GPSM2 Missense_Mutation p.I600L 0.29 tolerated(0.11) benign(0.048) TCGA-D7-A6EY-01 1 109795976 109795976 G T CELSR2 Missense_Mutation p.R1092L 0.26 deleterious(0.02) probably_damaging(0.992) TCGA-D7-A6EY-01 1 109811254 109811254 T C CELSR2 Missense_Mutation p.W2124R 0.12 deleterious(0) probably_damaging(1) TCGA-D7-A6EY-01 1 110260147 110260147 C A GSTM5 3'UTR 0.22 TCGA-D7-A6EY-01 1 110740210 110740210 A T SLC6A17 Missense_Mutation p.I602F 0.16 tolerated(0.06) possibly_damaging(0.632) TCGA-D7-A6EY-01 1 111060811 111060811 C T KCNA10 Missense_Mutation p.R200H 0.10 deleterious(0.01) benign(0.293) TCGA-D7-A6EY-01 1 111060976 111060976 T C KCNA10 Missense_Mutation p.Y145C 0.11 deleterious(0) probably_damaging(1) TCGA-D7-A6EY-01 1 111216712 111216712 G A KCNA3 Silent p.S240S 0.18 TCGA-D7-A6EY-01 1 11147582 11147582 A C EXOSC10 Missense_Mutation p.F338V 0.23 deleterious(0) probably_damaging(0.981) TCGA-D7-A6EY-01 1 11204706 11204706 T C MTOR Missense_Mutation p.Q1624R 0.09 tolerated(0.4) probably_damaging(0.988) TCGA-D7-A6EY-01 1 11346203 11346203 C - UBIAD1 3'UTR 0.19 TCGA-D7-A6EY-01 1 114497277 114497277 G A HIPK1 Missense_Mutation p.R402H 0.28 deleterious(0) probably_damaging(0.998) TCGA-D7-A6EY-01 1 116666771 116666771 T C MAB21L3 Missense_Mutation p.Y92H 0.18 deleterious(0) probably_damaging(0.996) TCGA-D7-A6EY-01 1 1168187 1168187 C A B3GALT6 Missense_Mutation p.R177S 0.27 tolerated(0.27) benign(0.101) TCGA-D7-A6EY-01 1 117620607 117620607 G A TTF2 Missense_Mutation p.R548H 0.25 deleterious(0) possibly_damaging(0.775) TCGA-D7-A6EY-01 1 11982665 11982665 G T KIAA2013 Intron 0.18 TCGA-D7-A6EY-01 1 12025621 12025621 G A PLOD1 Missense_Mutation p.D519N 0.16 deleterious(0) probably_damaging(0.947) TCGA-D7-A6EY-01 1 12198423 12198424 - G TNFRSF8 Frame_Shift_Ins p.S495Lfs*8 0.25 TCGA-D7-A6EY-01 1 1269091 1269091 G - TAS1R3 Frame_Shift_Del p.L606Wfs*43 0.17 TCGA-D7-A6EY-01 1 1290110 1290110 G - MXRA8 Frame_Shift_Del p.R301Gfs*107 0.31 TCGA-D7-A6EY-01 1 13910573 13910573 G A PDPN Silent p.S91S 0.22 TCGA-D7-A6EY-01 1 144921875 144921875 T G PDE4DIP Missense_Mutation p.E385A 0.09 deleterious(0) possibly_damaging(0.792) TCGA-D7-A6EY-01 1 145281636 145281636 C T NOTCH2NL Missense_Mutation p.S189L 0.08 deleterious(0.01) benign(0.013) TCGA-D7-A6EY-01 1 145498816 145498816 T - LIX1L 3'UTR 0.16 TCGA-D7-A6EY-01 1 145580583 145580583 C T PIAS3 Missense_Mutation p.R295W 0.12 deleterious(0) probably_damaging(1) TCGA-D7-A6EY-01 1 149399189 149399189 A - HIST2H3PS2 3'Flank 0.13 TCGA-D7-A6EY-01 1 150259389 150259389 T G C1orf51 3'UTR 0.07 TCGA-D7-A6EY-01 1 150476863 150476863 T A TARS2 Missense_Mutation p.I557N 0.11 deleterious(0) probably_damaging(0.969) TCGA-D7-A6EY-01 1 150483523 150483523 A C ECM1 Missense_Mutation p.Q213P 0.17 tolerated(0.07) benign(0.059) TCGA-D7-A6EY-01 1 150689667 150689667 G A HORMAD1 Missense_Mutation p.T42M 0.17 deleterious(0) probably_damaging(0.999) TCGA-D7-A6EY-01 1 150971953 150971953 C T FAM63A Silent p.A339A 0.14 TCGA-D7-A6EY-01 1 151006689 151006689 A G PRUNE Silent p.T447T 0.12 TCGA-D7-A6EY-01 1 151266533 151266533 T C PI4KB Missense_Mutation p.M756V 0.16 deleterious(0.03) probably_damaging(0.917) TCGA-D7-A6EY-01 1 151337121 151337121 G A SELENBP1 Silent p.N439N 0.19 TCGA-D7-A6EY-01 1 151380950 151380950 G T POGZ Missense_Mutation p.D723E 0.21 tolerated(0.42) benign(0.084) TCGA-D7-A6EY-01 1 151493103 151493103 C A CGN Missense_Mutation p.A359E 0.07 tolerated(0.77) benign(0.208) TCGA-D7-A6EY-01 1 152080674 152080674 T - TCHH Frame_Shift_Del p.E1673Dfs*78 0.12 TCGA-D7-A6EY-01 1 152193015 152193015 G A HRNR Missense_Mutation p.H364Y 0.12 unknown(0) TCGA-D7-A6EY-01 1 153516120 153516120 A T S100A4 3'UTR 0.11 TCGA-D7-A6EY-01 1 154246391 154246391 C - HAX1 Frame_Shift_Del p.Q155Nfs*59 0.19 TCGA-D7-A6EY-01 1 154842106 154842106 G - KCNN3 Frame_Shift_Del p.P112Lfs*64 0.26 TCGA-D7-A6EY-01 1 154932221 154932221 G - PYGO2 Frame_Shift_Del p.V87Wfs*74 0.18 TCGA-D7-A6EY-01 1 154988725 154988725 A G ZBTB7B Missense_Mutation p.K429R 0.06 deleterious(0) probably_damaging(0.969) TCGA-D7-A6EY-01 1 155014015 155014015 G A DCST1 Missense_Mutation p.R225H 0.19 tolerated(0.35) benign(0.001) TCGA-D7-A6EY-01 1 155148108 155148108 C T TRIM46 Missense_Mutation p.R104W 0.13 deleterious(0) possibly_damaging(0.717) TCGA-D7-A6EY-01 1 155171899 155171899 G A THBS3 Intron 0.23 TCGA-D7-A6EY-01 1 155239307 155239307 C T CLK2 Missense_Mutation p.R124H 0.17 tolerated(0.23) benign(0.01) TCGA-D7-A6EY-01 1 155300241 155300241 T A RUSC1 Nonsense_Mutation p.L863* 0.09 TCGA-D7-A6EY-01 1 155638508 155638508 G C YY1AP1 Missense_Mutation p.S401R 0.05 deleterious(0.05) probably_damaging(0.999) TCGA-D7-A6EY-01 1 155790395 155790395 A C GON4L Splice_Site p.X338_splice 0.21 TCGA-D7-A6EY-01 1 155791289 155791289 A G GON4L Silent p.S313S 0.11 TCGA-D7-A6EY-01 1 156046288 156046288 T - MEX3A 3'UTR 0.12 TCGA-D7-A6EY-01 1 156146235 156146235 T C SEMA4A Missense_Mutation p.L578P 0.10 deleterious(0) probably_damaging(1) TCGA-D7-A6EY-01 1 156617399 156617399 C T BCAN Missense_Mutation p.P189L 0.16 deleterious(0) probably_damaging(1) TCGA-D7-A6EY-01 1 156702120 156702120 C T RRNAD1 Missense_Mutation p.A95V 0.12 deleterious(0) possibly_damaging(0.459) TCGA-D7-A6EY-01 1 156845893 156845893 G A NTRK1 Missense_Mutation p.R508Q 0.18 tolerated(0.35) benign(0.009) TCGA-D7-A6EY-01 1 158064543 158064543 G A KIRREL Missense_Mutation p.R636H 0.26 deleterious(0) possibly_damaging(0.847) TCGA-D7-A6EY-01 1 158226062 158226062 C A CD1A Silent p.L198L 0.16 TCGA-D7-A6EY-01 1 15905361 15905361 C T AGMAT Missense_Mutation p.R238Q 0.21 tolerated(0.11) benign(0.031) TCGA-D7-A6EY-01 1 160523852 160523852 T G CD84 Missense_Mutation p.E158A 0.07 deleterious(0) probably_damaging(0.967) TCGA-D7-A6EY-01 1 160914976 160914976 C T ITLN2 Missense_Mutation p.C311Y 0.22 deleterious(0.02) benign(0.105) TCGA-D7-A6EY-01 1 161039499 161039499 T C ARHGAP30 5'UTR 0.22 TCGA-D7-A6EY-01 1 16202981 16202981 G T SPEN Missense_Mutation p.G230V 0.10 probably_damaging(1) TCGA-D7-A6EY-01 1 165379995 165379995 C T RXRG Missense_Mutation p.R286H 0.17 tolerated(0.22) probably_damaging(0.991) TCGA-D7-A6EY-01 1 1670383 1670383 T A SLC35E2 Missense_Mutation p.M146L 0.18 deleterious(0.02) probably_damaging(0.997) TCGA-D7-A6EY-01 1 16774557 16774557 C T NECAP2 Nonsense_Mutation p.R101* 0.20 TCGA-D7-A6EY-01 1 172558174 172558174 C T SUCO Missense_Mutation p.R645W 0.28 deleterious(0.02) benign(0.003) TCGA-D7-A6EY-01 1 17431488 17431488 C T PADI2 Missense_Mutation p.R54H 0.33 tolerated(0.84) benign(0.004) TCGA-D7-A6EY-01 1 175331808 175331809 - A TNR Frame_Shift_Ins p.V949Cfs*31 0.20 TCGA-D7-A6EY-01 1 178411970 178411971 - T RASAL2 Frame_Shift_Ins p.E365* 0.12 TCGA-D7-A6EY-01 1 180849394 180849394 A G XPR1 Missense_Mutation p.N664S 0.14 tolerated(1) benign(0.001) TCGA-D7-A6EY-01 1 180885382 180885383 - C KIAA1614 Frame_Shift_Ins p.R51Kfs*99 0.14 TCGA-D7-A6EY-01 1 181706742 181706742 C T CACNA1E Silent p.I1168I 0.18 TCGA-D7-A6EY-01 1 181727135 181727135 C T CACNA1E Missense_Mutation p.P1461L 0.07 deleterious(0) possibly_damaging(0.726) TCGA-D7-A6EY-01 1 182849650 182849650 C T DHX9 Missense_Mutation p.A844V 0.11 tolerated(0.17) benign(0.011) TCGA-D7-A6EY-01 1 183947595 183947595 T - COLGALT2 Frame_Shift_Del p.N108Mfs*37 0.17 TCGA-D7-A6EY-01 1 184792782 184792782 G A FAM129A Missense_Mutation p.T271M 0.15 deleterious(0.04) possibly_damaging(0.52) TCGA-D7-A6EY-01 1 186084010 186084010 G T HMCN1 Missense_Mutation p.G3779V 0.08 probably_damaging(1) TCGA-D7-A6EY-01 1 18809393 18809393 G T KLHDC7A Missense_Mutation p.G640C 0.17 deleterious(0) probably_damaging(1) TCGA-D7-A6EY-01 1 18809471 18809471 A T KLHDC7A Nonsense_Mutation p.K666* 0.19 TCGA-D7-A6EY-01 1 19499675 19499675 C T UBR4 Silent p.Q1097Q 0.17 TCGA-D7-A6EY-01 1 197390846 197390846 T G CRB1 Missense_Mutation p.F630V 0.20 tolerated(0.2) benign(0.002) TCGA-D7-A6EY-01 1 19992231 19992231 T C HTR6 5'UTR 0.20 TCGA-D7-A6EY-01 1 200843134 200843134 C T GPR25 Silent p.C323C 0.09 TCGA-D7-A6EY-01 1 200948728 200948728 G A KIF21B Silent p.S1365S 0.19 TCGA-D7-A6EY-01 1 201081567 201081567 G A CACNA1S 5'UTR 0.12 TCGA-D7-A6EY-01 1 201185790 201185790 A G IGFN1 Silent p.P3168P 0.07 TCGA-D7-A6EY-01 1 201454493 201454493 C A CSRP1 Missense_Mutation p.K141N 0.10 deleterious(0.01) possibly_damaging(0.587) TCGA-D7-A6EY-01 1 202097020 202097020 C T GPR37L1 Missense_Mutation p.T261M 0.10 tolerated(0.13) benign(0.06) TCGA-D7-A6EY-01 1 203134422 203134422 G A ADORA1 Silent p.A125A 0.17 TCGA-D7-A6EY-01 1 205042274 205042274 G A CNTN2 Missense_Mutation p.E975K 0.09 tolerated(0.35) benign(0.13) TCGA-D7-A6EY-01 1 205156906 205156906 A G DSTYK Silent p.P98P 0.14 TCGA-D7-A6EY-01 1 205549930 205549930 C G MFSD4 Missense_Mutation p.L191V 0.07 tolerated(0.15) possibly_damaging(0.738) TCGA-D7-A6EY-01 1 207112537 207112537 G A PIGR Silent p.S105S 0.20 TCGA-D7-A6EY-01 1 207224175 207224175 G T YOD1 Silent p.T67T 0.14 TCGA-D7-A6EY-01 1 207868046 207868046 A G CR1L Missense_Mutation p.K271R 0.08 tolerated(0.82) benign(0.001) TCGA-D7-A6EY-01 1 207890816 207890816 T G CR1L Missense_Mutation p.F474L 0.09 tolerated(0.65) benign(0.013) TCGA-D7-A6EY-01 1 208200450 208200450 C T PLXNA2 3'UTR 0.20 TCGA-D7-A6EY-01 1 20977094 20977094 A - PINK1 Frame_Shift_Del p.M554* 0.22 TCGA-D7-A6EY-01 1 21042005 21042005 T C KIF17 Missense_Mutation p.H120R 0.08 deleterious(0) probably_damaging(0.963) TCGA-D7-A6EY-01 1 21154129 21154129 T C EIF4G3 Missense_Mutation p.H1367R 0.33 tolerated(0.21) benign(0.03) TCGA-D7-A6EY-01 1 212538546 212538546 G A TMEM206 3'UTR 0.22 TCGA-D7-A6EY-01 1 212798505 212798505 G A FAM71A Missense_Mutation p.E96K 0.14 deleterious(0) benign(0.016) TCGA-D7-A6EY-01 1 214492252 214492252 G T SMYD2 Missense_Mutation p.A154S 0.19 tolerated(0.14) benign(0.009) TCGA-D7-A6EY-01 1 21924941 21924941 T C RAP1GAP Missense_Mutation p.T675A 0.23 tolerated(0.31) benign(0.023) TCGA-D7-A6EY-01 1 22150069 22150069 C T LDLRAD2 3'UTR 0.19 TCGA-D7-A6EY-01 1 22202409 22202409 C T HSPG2 Missense_Mutation p.A1044T 0.14 benign(0.155) TCGA-D7-A6EY-01 1 22216952 22216952 G A HSPG2 Silent p.P127P 0.25 TCGA-D7-A6EY-01 1 223177026 223177026 C T DISP1 Missense_Mutation p.R763C 0.17 deleterious(0) probably_damaging(0.997) TCGA-D7-A6EY-01 1 223985981 223985982 - T TP53BP2 Frame_Shift_Ins p.N628Kfs*26 0.20 TCGA-D7-A6EY-01 1 22408234 22408234 T G CDC42 Missense_Mutation p.V42G 0.10 deleterious(0) probably_damaging(0.991) TCGA-D7-A6EY-01 1 22446524 22446524 C T WNT4 3'UTR 0.11 TCGA-D7-A6EY-01 1 226125452 226125452 A G LEFTY2 Missense_Mutation p.C264R 0.16 deleterious(0) probably_damaging(0.999) TCGA-D7-A6EY-01 1 227203899 227203899 C A CDC42BPA Splice_Site p.X1545_splice 0.16 TCGA-D7-A6EY-01 1 227262051 227262051 T - CDC42BPA Frame_Shift_Del p.K832Rfs*10 0.16 TCGA-D7-A6EY-01 1 227920195 227920195 C T JMJD4 Silent p.A430A 0.14 TCGA-D7-A6EY-01 1 228400200 228400200 C T OBSCN Missense_Mutation p.P239L 0.11 probably_damaging(0.973) TCGA-D7-A6EY-01 1 228492183 228492183 A C OBSCN Missense_Mutation p.I4728L 0.11 probably_damaging(0.963) TCGA-D7-A6EY-01 1 229580735 229580735 T C NUP133 Missense_Mutation p.D1087G 0.18 deleterious(0.03) probably_damaging(0.989) TCGA-D7-A6EY-01 1 229653865 229653865 T - ABCB10 3'UTR 0.40 TCGA-D7-A6EY-01 1 231885809 231885809 G - DISC1 Frame_Shift_Del p.A420Pfs*14 0.13 TCGA-D7-A6EY-01 1 234744260 234744260 C A IRF2BP2 Missense_Mutation p.K327N 0.23 deleterious(0) probably_damaging(0.95) TCGA-D7-A6EY-01 1 237550661 237550661 A G RYR2 Silent p.S219S 0.15 TCGA-D7-A6EY-01 1 23954440 23954440 A G MDS2 5'UTR 0.08 TCGA-D7-A6EY-01 1 241753558 241753558 A - KMO Frame_Shift_Del p.K420Rfs*2 0.13 TCGA-D7-A6EY-01 1 242253037 242253037 T - PLD5 3'UTR 0.22 TCGA-D7-A6EY-01 1 243328299 243328300 - T CEP170 Frame_Shift_Ins p.M988Nfs*20 0.09 TCGA-D7-A6EY-01 1 244218632 244218632 A T ZBTB18 Missense_Mutation p.D519V 0.05 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-D7-A6EY-01 1 247655019 247655019 C T OR2W5 RNA 0.09 TCGA-D7-A6EY-01 1 247978699 247978699 G C OR14A16 Silent p.L111L 0.15 TCGA-D7-A6EY-01 1 2541187 2541187 G A MMEL1 Missense_Mutation p.R126C 0.10 deleterious(0) probably_damaging(0.95) TCGA-D7-A6EY-01 1 26316044 26316044 T C PAFAH2 Missense_Mutation p.M47V 0.16 tolerated(0.51) benign(0) TCGA-D7-A6EY-01 1 26620779 26620779 A G UBXN11 Missense_Mutation p.M159T 0.08 tolerated(0.57) benign(0.002) TCGA-D7-A6EY-01 1 26688423 26688423 G T ZNF683 Silent p.R412R 0.17 TCGA-D7-A6EY-01 1 26800609 26800609 A - HMGN2 Frame_Shift_Del p.K43Rfs*61 0.21 TCGA-D7-A6EY-01 1 27106424 27106424 G A ARID1A Missense_Mutation p.G2012D 0.15 probably_damaging(0.998) TCGA-D7-A6EY-01 1 27219176 27219176 A G GPATCH3 Silent p.F406F 0.04 TCGA-D7-A6EY-01 1 27876706 27876706 T A AHDC1 Missense_Mutation p.S641C 0.10 deleterious(0) possibly_damaging(0.843) TCGA-D7-A6EY-01 1 28233741 28233741 G A RPA2 Missense_Mutation p.A57V 0.18 deleterious(0) possibly_damaging(0.834) TCGA-D7-A6EY-01 1 28598946 28598946 G A SESN2 Missense_Mutation p.R169Q 0.20 tolerated(0.14) probably_damaging(0.999) TCGA-D7-A6EY-01 1 28861886 28861886 G C RCC1 Missense_Mutation p.G250R 0.16 deleterious(0) possibly_damaging(0.827) TCGA-D7-A6EY-01 1 29379716 29379717 - A EPB41 Frame_Shift_Ins p.T582Nfs*5 0.14 TCGA-D7-A6EY-01 1 32626257 32626257 T A KPNA6 Silent p.V200V 0.15 TCGA-D7-A6EY-01 1 33272092 33272092 G A YARS Silent p.P167P 0.19 TCGA-D7-A6EY-01 1 33560207 33560207 G A ADC Missense_Mutation p.A216T 0.25 deleterious(0.02) probably_damaging(1) TCGA-D7-A6EY-01 1 3545083 3545083 C T TPRG1L Silent p.I245I 0.19 TCGA-D7-A6EY-01 1 36025969 36025969 C T NCDN Missense_Mutation p.R73W 0.08 deleterious(0.02) probably_damaging(0.993) TCGA-D7-A6EY-01 1 36212440 36212440 T C CLSPN Silent p.L927L 0.15 TCGA-D7-A6EY-01 1 36557274 36557274 A C ADPRHL2 Missense_Mutation p.T122P 0.15 tolerated(0.15) possibly_damaging(0.518) TCGA-D7-A6EY-01 1 36614988 36614988 C T TRAPPC3 5'UTR 0.24 TCGA-D7-A6EY-01 1 37947355 37947355 A G ZC3H12A Missense_Mutation p.Y246C 0.11 deleterious(0) probably_damaging(1) TCGA-D7-A6EY-01 1 38155545 38155545 T C C1orf109 Missense_Mutation p.Q3R 0.26 deleterious(0.03) benign(0.156) TCGA-D7-A6EY-01 1 38411520 38411520 C T INPP5B Silent p.A20A 0.08 TCGA-D7-A6EY-01 1 38511619 38511619 C T POU3F1 Missense_Mutation p.R266H 0.18 deleterious(0) probably_damaging(0.956) TCGA-D7-A6EY-01 1 40131298 40131298 G T NT5C1A Missense_Mutation p.L110M 0.13 deleterious(0) probably_damaging(0.989) TCGA-D7-A6EY-01 1 40702285 40702285 A C RLF Silent p.P637P 0.17 TCGA-D7-A6EY-01 1 40735799 40735799 G A ZMPSTE24 Silent p.L209L 0.12 TCGA-D7-A6EY-01 1 40960996 40960996 A G ZFP69 Silent p.Q282Q 0.15 TCGA-D7-A6EY-01 1 41540951 41540952 - G SCMH1 Frame_Shift_Ins p.S297Ifs*5 0.19 TCGA-D7-A6EY-01 1 42046170 42046170 T C HIVEP3 Silent p.S1433S 0.16 TCGA-D7-A6EY-01 1 42048715 42048715 C T HIVEP3 Missense_Mutation p.R585Q 0.09 probably_damaging(0.996) TCGA-D7-A6EY-01 1 42620453 42620453 G A GUCA2B Missense_Mutation p.A65T 0.07 tolerated(0.18) benign(0.012) TCGA-D7-A6EY-01 1 43775150 43775150 G A TIE1 Missense_Mutation p.R427H 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-D7-A6EY-01 1 43824985 43824985 G A CDC20 Silent p.K33K 0.10 TCGA-D7-A6EY-01 1 43826885 43826885 C T CDC20 Missense_Mutation p.A391V 0.14 tolerated(0.06) benign(0.006) TCGA-D7-A6EY-01 1 44463618 44463618 A C SLC6A9 Missense_Mutation p.I612S 0.09 deleterious(0) possibly_damaging(0.861) TCGA-D7-A6EY-01 1 44685902 44685902 C T DMAP1 Missense_Mutation p.A422V 0.18 tolerated(0.28) benign(0.004) TCGA-D7-A6EY-01 1 45218905 45218905 T G KIF2C Missense_Mutation p.S181A 0.07 tolerated(0.48) benign(0.002) TCGA-D7-A6EY-01 1 46714036 46714036 T C RAD54L 5'UTR 0.13 TCGA-D7-A6EY-01 1 46751711 46751711 C T LRRC41 Missense_Mutation p.R273Q 0.21 tolerated(0.79) benign(0.014) TCGA-D7-A6EY-01 1 47717264 47717264 T C STIL Silent p.E1137E 0.08 TCGA-D7-A6EY-01 1 50885133 50885133 G A DMRTA2 Missense_Mutation p.P278L 0.11 deleterious(0) probably_damaging(0.913) TCGA-D7-A6EY-01 1 52941046 52941047 - C ZCCHC11 Frame_Shift_Ins p.K729Efs*5 0.08 TCGA-D7-A6EY-01 1 52981488 52981488 A - ZCCHC11 Intron 0.14 TCGA-D7-A6EY-01 1 53925243 53925243 G A DMRTB1 Silent p.K39K 0.24 TCGA-D7-A6EY-01 1 61818185 61818185 A G NFIA Missense_Mutation p.Y300C 0.06 deleterious(0) probably_damaging(1) TCGA-D7-A6EY-01 1 62545184 62545184 A G INADL Missense_Mutation p.I1396M 0.06 deleterious(0.03) benign(0.027) TCGA-D7-A6EY-01 1 6257785 6257785 T - RPL22 Frame_Shift_Del p.K15Rfs*5 0.29 TCGA-D7-A6EY-01 1 6272464 6272464 C T RNF207 Silent p.V490V 0.28 TCGA-D7-A6EY-01 1 62740426 62740427 - G KANK4 Frame_Shift_Ins p.Q117Pfs*8 0.18 TCGA-D7-A6EY-01 1 6314953 6314953 G A GPR153 Missense_Mutation p.R5W 0.22 deleterious(0.04) benign(0.027) TCGA-D7-A6EY-01 1 63790037 63790037 G A FOXD3 Silent p.S436S 0.29 TCGA-D7-A6EY-01 1 63836566 63836570 AAGAA - ALG6 5'UTR 0.31 TCGA-D7-A6EY-01 1 63876949 63876950 - T ALG6 Frame_Shift_Ins p.C212Lfs*9 0.14 TCGA-D7-A6EY-01 1 6681475 6681475 C T PHF13 Silent p.D227D 0.17 TCGA-D7-A6EY-01 1 70505179 70505179 G A LRRC7 Silent p.A1186A 0.16 TCGA-D7-A6EY-01 1 70766510 70766510 C T ANKRD13C Silent p.A286A 0.14 TCGA-D7-A6EY-01 1 74797186 74797186 T - FPGT-TNNI3K Frame_Shift_Del p.F282Sfs*15 0.25 TCGA-D7-A6EY-01 1 75626507 75626507 A G LHX8 Missense_Mutation p.H333R 0.17 tolerated(0.15) benign(0.01) TCGA-D7-A6EY-01 1 77333294 77333294 A G ST6GALNAC5 5'UTR 0.15 TCGA-D7-A6EY-01 1 77334221 77334221 T C ST6GALNAC5 Missense_Mutation p.C19R 0.18 possibly_damaging(0.878) TCGA-D7-A6EY-01 1 78478836 78478836 T C DNAJB4 Missense_Mutation p.S105P 0.09 tolerated(0.07) benign(0.043) TCGA-D7-A6EY-01 1 89521895 89521895 T - GBP1 Frame_Shift_Del p.K391Sfs*28 0.12 TCGA-D7-A6EY-01 1 89579764 89579765 - CT GBP2 Frame_Shift_Ins p.A362Rfs*7 0.20 TCGA-D7-A6EY-01 1 92729250 92729250 T C GLMN Missense_Mutation p.I447V 0.21 tolerated(0.29) benign(0.01) TCGA-D7-A6EY-01 1 92946569 92946569 G A GFI1 Silent p.S125S 0.15 TCGA-D7-A6EY-01 1 9416276 9416276 G - SPSB1 Frame_Shift_Del p.G110Afs*70 0.19 TCGA-D7-A6EY-01 1 9427640 9427640 G A SPSB1 3'UTR 0.28 TCGA-D7-A6EY-01 1 95001576 95001576 A C F3 Silent p.G119G 0.07 TCGA-D7-A6EY-01 1 97658740 97658740 G A DPYD Missense_Mutation p.A836V 0.12 tolerated(0.06) possibly_damaging(0.628) TCGA-D7-A6EY-01 1 97771791 97771791 A - DPYD Frame_Shift_Del p.F707Lfs*4 0.14 TCGA-D7-A6EY-01 1 97915675 97915675 C T DPYD Silent p.E615E 0.20 TCGA-D7-A6EY-01 1 99469994 99469994 G A LPPR5 Silent p.L78L 0.15 TCGA-D7-A6EY-01 20 13509077 13509077 T A TASP1 Intron 0.08 TCGA-D7-A6EY-01 20 139554 139555 - A DEFB127 Frame_Shift_Ins p.I66Nfs*50 0.13 TCGA-D7-A6EY-01 20 16253882 16253882 T G KIF16B 3'UTR 0.14 TCGA-D7-A6EY-01 20 1915366 1915366 A G SIRPA Missense_Mutation p.H411R 0.24 deleterious(0) possibly_damaging(0.84) TCGA-D7-A6EY-01 20 20552181 20552181 C T RALGAPA2 Missense_Mutation p.R1026H 0.17 tolerated(0.18) benign(0.02) TCGA-D7-A6EY-01 20 21689276 21689276 G A PAX1 Missense_Mutation p.A333T 0.19 tolerated_low_confidence(0.1) benign(0.027) TCGA-D7-A6EY-01 20 30789769 30789769 A T PLAGL2 Silent p.P71P 0.20 TCGA-D7-A6EY-01 20 30789999 30789999 A G PLAGL2 5'UTR 0.17 TCGA-D7-A6EY-01 20 30790000 30790000 G T PLAGL2 5'UTR 0.17 TCGA-D7-A6EY-01 20 30825530 30825530 A G POFUT1 3'UTR 0.25 TCGA-D7-A6EY-01 20 31017757 31017757 A G ASXL1 Missense_Mutation p.S207G 0.25 deleterious(0.05) benign(0.011) TCGA-D7-A6EY-01 20 31768343 31768343 A C BPIFA2 Missense_Mutation p.T243P 0.15 tolerated_low_confidence(0.32) benign(0.178) TCGA-D7-A6EY-01 20 31961920 31961920 C - CDK5RAP1 Splice_Site p.X402_splice 0.20 TCGA-D7-A6EY-01 20 33440201 33440201 G A GGT7 Missense_Mutation p.A487V 0.09 deleterious(0.03) benign(0.271) TCGA-D7-A6EY-01 20 34263044 34263044 T C NFS1 Missense_Mutation p.M291V 0.15 tolerated(0.06) benign(0.024) TCGA-D7-A6EY-01 20 35506355 35506355 G A TLDC2 Silent p.E29E 0.07 TCGA-D7-A6EY-01 20 36627613 36627613 G - TTI1 Frame_Shift_Del p.L924Wfs*37 0.15 TCGA-D7-A6EY-01 20 3802809 3802809 T A AP5S1 Silent p.T15T 0.14 TCGA-D7-A6EY-01 20 44526408 44526409 - G CTSA Frame_Shift_Ins p.D426Gfs*2 0.19 TCGA-D7-A6EY-01 20 44540136 44540136 A G PLTP 5'UTR 0.09 TCGA-D7-A6EY-01 20 45354455 45354455 C A SLC2A10 Silent p.S260S 0.21 TCGA-D7-A6EY-01 20 47770494 47770494 A G STAU1 Missense_Mutation p.M107T 0.09 tolerated(0.25) benign(0.388) TCGA-D7-A6EY-01 20 49509194 49509194 T G ADNP Missense_Mutation p.H686P 0.09 deleterious(0.01) probably_damaging(0.994) TCGA-D7-A6EY-01 20 50159030 50159030 G A NFATC2 Silent p.A3A 0.07 TCGA-D7-A6EY-01 20 50405478 50405478 G A SALL4 Silent p.H888H 0.21 TCGA-D7-A6EY-01 20 52773992 52773992 C T CYP24A1 Missense_Mutation p.V457I 0.18 tolerated(1) benign(0.004) TCGA-D7-A6EY-01 20 60921821 60921821 A T LAMA5 Missense_Mutation p.Y370N 0.15 probably_damaging(0.999) TCGA-D7-A6EY-01 20 60963281 60963281 T C RPS21 Intron 0.33 TCGA-D7-A6EY-01 20 62120306 62120306 A G EEF1A2 Missense_Mutation p.M410T 0.18 deleterious_low_confidence(0.01) probably_damaging(0.987) TCGA-D7-A6EY-01 20 62597524 62597524 C T ZNF512B Missense_Mutation p.R335H 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-D7-A6EY-01 20 62871174 62871174 A C MYT1 Missense_Mutation p.Q1052P 0.22 possibly_damaging(0.898) TCGA-D7-A6EY-01 21 19715873 19715873 C T TMPRSS15 Missense_Mutation p.D460N 0.12 tolerated(0.78) benign(0.005) TCGA-D7-A6EY-01 21 30316743 30316743 A T LTN1 Missense_Mutation p.I1361N 0.13 deleterious(0) probably_damaging(0.996) TCGA-D7-A6EY-01 21 30409707 30409707 A G USP16 Missense_Mutation p.M187V 0.14 tolerated(0.3) benign(0) TCGA-D7-A6EY-01 21 30419304 30419304 A G USP16 Missense_Mutation p.N558S 0.19 tolerated(0.14) benign(0.37) TCGA-D7-A6EY-01 21 32589954 32589954 G A TIAM1 Missense_Mutation p.A686V 0.22 tolerated(0.64) benign(0.017) TCGA-D7-A6EY-01 21 33065711 33065711 C T SCAF4 Missense_Mutation p.R470H 0.18 possibly_damaging(0.522) TCGA-D7-A6EY-01 21 33297021 33297021 G A HUNK Missense_Mutation p.R168Q 0.24 tolerated(0.14) probably_damaging(0.994) TCGA-D7-A6EY-01 21 33974546 33974546 G A C21orf59 Intron 0.17 TCGA-D7-A6EY-01 21 34839404 34839404 A T TMEM50B Missense_Mutation p.I42N 0.12 deleterious(0) probably_damaging(0.986) TCGA-D7-A6EY-01 21 34925215 34925215 G A SON Silent p.V1226V 0.18 TCGA-D7-A6EY-01 21 37833792 37833792 G T CLDN14 Silent p.R68R 0.23 TCGA-D7-A6EY-01 21 38569989 38569989 A C TTC3 Missense_Mutation p.K1900Q 0.24 tolerated(0.08) benign(0.128) TCGA-D7-A6EY-01 21 40558989 40558989 A - BRWD1 Frame_Shift_Del p.L2309* 0.22 TCGA-D7-A6EY-01 21 40768930 40768930 T A WRB 3'UTR 0.16 TCGA-D7-A6EY-01 21 40824066 40824066 C T SH3BGR Missense_Mutation p.A78V 0.07 deleterious(0.03) possibly_damaging(0.593) TCGA-D7-A6EY-01 21 42647438 42647438 A G BACE2 Missense_Mutation p.I482V 0.09 tolerated(0.61) benign(0.047) TCGA-D7-A6EY-01 21 42866320 42866320 C T TMPRSS2 Silent p.T104T 0.17 TCGA-D7-A6EY-01 21 43529725 43529725 T C UMODL1 Missense_Mutation p.C525R 0.18 deleterious(0) probably_damaging(0.999) TCGA-D7-A6EY-01 21 43697008 43697008 T C ABCG1 Missense_Mutation p.S181P 0.21 deleterious(0) possibly_damaging(0.568) TCGA-D7-A6EY-01 21 43710184 43710184 T G ABCG1 Missense_Mutation p.S429A 0.28 tolerated(0.27) benign(0.241) TCGA-D7-A6EY-01 21 43962555 43962555 C T SLC37A1 Silent p.V176V 0.28 TCGA-D7-A6EY-01 21 45746780 45746780 C A PFKL 3'UTR 0.33 TCGA-D7-A6EY-01 21 45929123 45929123 G A TSPEAR Silent p.T571T 0.14 TCGA-D7-A6EY-01 21 46032513 46032513 T C KRTAP10-8 Missense_Mutation p.C166R 0.11 deleterious(0) unknown(0) TCGA-D7-A6EY-01 21 46276178 46276178 G A PTTG1IP Missense_Mutation p.R127W 0.13 deleterious(0.03) probably_damaging(0.981) TCGA-D7-A6EY-01 21 46951980 46951980 C T SLC19A1 Missense_Mutation p.R91H 0.06 deleterious(0.01) probably_damaging(0.996) TCGA-D7-A6EY-01 21 47648418 47648418 G T LSS Missense_Mutation p.T37N 0.10 tolerated(0.05) benign(0.036) TCGA-D7-A6EY-01 22 17073446 17073446 G A CCT8L2 5'UTR 0.22 TCGA-D7-A6EY-01 22 19164421 19164421 T C SLC25A1 Missense_Mutation p.K190R 0.20 tolerated(0.15) possibly_damaging(0.669) TCGA-D7-A6EY-01 22 19839744 19839744 G T C22orf29 Missense_Mutation p.P14H 0.13 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-D7-A6EY-01 22 20920870 20920870 A G MED15 Silent p.P269P 0.09 TCGA-D7-A6EY-01 22 20920873 20920873 T G MED15 Missense_Mutation p.I270M 0.09 tolerated_low_confidence(0.86) unknown(0) TCGA-D7-A6EY-01 22 21242091 21242091 A - SNAP29 Frame_Shift_Del p.S250Afs*19 0.19 TCGA-D7-A6EY-01 22 21347167 21347167 C T LZTR1 Missense_Mutation p.R412C 0.20 deleterious(0) probably_damaging(0.998) TCGA-D7-A6EY-01 22 21384406 21384406 G A SLC7A4 Missense_Mutation p.A406V 0.14 deleterious(0.01) possibly_damaging(0.58) TCGA-D7-A6EY-01 22 23090338 23090338 A G IGLV3-16 Missense_Mutation p.I93V 0.20 deleterious(0.01) benign(0.188) TCGA-D7-A6EY-01 22 24837129 24837129 G A ADORA2A Missense_Mutation p.R304H 0.18 tolerated(0.15) benign(0.001) TCGA-D7-A6EY-01 22 25756077 25756077 C T LRP5L 5'UTR 0.30 TCGA-D7-A6EY-01 22 28196403 28196403 C - MN1 Frame_Shift_Del p.P45Lfs*8 0.11 TCGA-D7-A6EY-01 22 29656464 29656464 A G RHBDD3 Silent p.A278A 0.28 TCGA-D7-A6EY-01 22 29708396 29708396 C - GAS2L1 3'Flank 0.22 TCGA-D7-A6EY-01 22 36684892 36684892 T C MYH9 Missense_Mutation p.T1551A 0.17 benign(0.006) TCGA-D7-A6EY-01 22 37578513 37578513 A C C1QTNF6 Silent p.A184A 0.16 TCGA-D7-A6EY-01 22 37770353 37770353 T C ELFN2 Missense_Mutation p.M408V 0.17 deleterious(0) probably_damaging(0.993) TCGA-D7-A6EY-01 22 38120107 38120107 C T TRIOBP Missense_Mutation p.T515I 0.11 tolerated_low_confidence(0.09) unknown(0) TCGA-D7-A6EY-01 22 38155263 38155263 A T TRIOBP Missense_Mutation p.I2106F 0.18 deleterious(0.01) probably_damaging(0.993) TCGA-D7-A6EY-01 22 39132304 39132304 G A SUN2 Missense_Mutation p.R729C 0.18 deleterious(0) probably_damaging(1) TCGA-D7-A6EY-01 22 39222542 39222542 G A NPTXR Missense_Mutation p.A354V 0.21 deleterious(0.02) possibly_damaging(0.473) TCGA-D7-A6EY-01 22 39537389 39537389 C T CBX7 Missense_Mutation p.A56T 0.19 deleterious(0.04) possibly_damaging(0.673) TCGA-D7-A6EY-01 22 40161237 40161237 T C ENTHD1 Missense_Mutation p.T404A 0.24 tolerated(0.32) benign(0.002) TCGA-D7-A6EY-01 22 40417669 40417670 - C FAM83F Frame_Shift_Ins p.V388Rfs*79 0.15 TCGA-D7-A6EY-01 22 41075396 41075396 T C MCHR1 5'UTR 0.17 TCGA-D7-A6EY-01 22 41574565 41574565 A G EP300 Missense_Mutation p.M2284V 0.08 benign(0.267) TCGA-D7-A6EY-01 22 41923962 41923964 ACA - ACO2 In_Frame_Del p.N716del 0.08 TCGA-D7-A6EY-01 22 42191458 42191458 T C MEI1 Missense_Mutation p.V1193A 0.13 deleterious(0) probably_damaging(0.98) TCGA-D7-A6EY-01 22 42606139 42606139 A - TCF20 Frame_Shift_Del p.Y1725Ifs*157 0.14 TCGA-D7-A6EY-01 22 43203153 43203153 C T ARFGAP3 Missense_Mutation p.R446H 0.24 deleterious(0) probably_damaging(0.999) TCGA-D7-A6EY-01 22 46931227 46931227 C - CELSR1 Frame_Shift_Del p.G614Afs*54 0.30 TCGA-D7-A6EY-01 22 47087536 47087536 A T CERK Missense_Mutation p.L422H 0.09 deleterious(0) probably_damaging(0.995) TCGA-D7-A6EY-01 22 50312905 50312905 T G CRELD2 Missense_Mutation p.F53V 0.23 deleterious(0) probably_damaging(0.987) TCGA-D7-A6EY-01 22 50316962 50316962 G A CRELD2 Missense_Mutation p.E306K 0.09 tolerated(0.82) benign(0.184) TCGA-D7-A6EY-01 22 50660956 50660956 A T TUBGCP6 Missense_Mutation p.L779Q 0.21 deleterious(0.05) probably_damaging(0.986) TCGA-D7-A6EY-01 22 50718156 50718156 T C PLXNB2 Missense_Mutation p.Q1431R 0.09 deleterious(0) probably_damaging(0.998) TCGA-D7-A6EY-01 22 50718488 50718489 CA - PLXNB2 Frame_Shift_Del p.V1396Gfs*61 0.15 TCGA-D7-A6EY-01 22 50754805 50754805 C A DENND6B Nonsense_Mutation p.E185* 0.55 TCGA-D7-A6EY-01 22 50900005 50900005 A C SBF1 Missense_Mutation p.V929G 0.26 deleterious(0) possibly_damaging(0.707) TCGA-D7-A6EY-01 22 50943866 50943866 A G LMF2 Silent p.V339V 0.24 TCGA-D7-A6EY-01 22 51007615 51007615 A T CPT1B 3'UTR 0.18 TCGA-D7-A6EY-01 22 51013014 51013014 T C CPT1B Missense_Mutation p.K265E 0.20 tolerated(0.86) benign(0.01) TCGA-D7-A6EY-01 2 100015270 100015270 A - EIF5B Frame_Shift_Del p.G1154Dfs*6 0.22 TCGA-D7-A6EY-01 2 101885600 101885600 T C CNOT11 Splice_Site p.X445_splice 0.23 TCGA-D7-A6EY-01 2 103011054 103011054 T C IL18R1 Missense_Mutation p.C413R 0.14 deleterious(0) probably_damaging(0.999) TCGA-D7-A6EY-01 2 103335430 103335430 G A MFSD9 Missense_Mutation p.R292C 0.19 deleterious(0) probably_damaging(1) TCGA-D7-A6EY-01 2 112779028 112779028 C T MERTK Missense_Mutation p.A740V 0.16 deleterious(0) probably_damaging(1) TCGA-D7-A6EY-01 2 113958951 113958951 T C PSD4 Missense_Mutation p.Y1044H 0.23 deleterious(0.05) probably_damaging(0.939) TCGA-D7-A6EY-01 2 119729110 119729110 G T MARCO Missense_Mutation p.G154C 0.22 deleterious(0.05) probably_damaging(0.984) TCGA-D7-A6EY-01 2 120677773 120677773 T - PTPN4 Frame_Shift_Del p.F321Lfs*7 0.17 TCGA-D7-A6EY-01 2 121744079 121744079 C T GLI2 Missense_Mutation p.R728W 0.27 tolerated(0.25) probably_damaging(0.983) TCGA-D7-A6EY-01 2 1271276 1271276 G A SNTG2 Missense_Mutation p.G406D 0.14 tolerated(0.37) possibly_damaging(0.883) TCGA-D7-A6EY-01 2 128408857 128408857 A T GPR17 Missense_Mutation p.Q211L 0.07 tolerated(0.06) benign(0.147) TCGA-D7-A6EY-01 2 135621197 135621197 A G ACMSD Missense_Mutation p.Y161C 0.21 deleterious(0) probably_damaging(0.978) TCGA-D7-A6EY-01 2 136872937 136872937 G A CXCR4 Silent p.D191D 0.22 TCGA-D7-A6EY-01 2 141259315 141259315 A C LRP1B Missense_Mutation p.L2931V 0.17 benign(0.364) TCGA-D7-A6EY-01 2 160885389 160885389 C T PLA2R1 Silent p.T309T 0.09 TCGA-D7-A6EY-01 2 162929958 162929958 A G DPP4 Silent p.A15A 0.07 TCGA-D7-A6EY-01 2 163230098 163230098 G - KCNH7 Frame_Shift_Del p.P1069Qfs*6 0.15 TCGA-D7-A6EY-01 2 1652558 1652558 A G PXDN Silent p.I998I 0.25 TCGA-D7-A6EY-01 2 1652960 1652960 G - PXDN Frame_Shift_Del p.N865Mfs*25 0.21 TCGA-D7-A6EY-01 2 166536039 166536039 G A CSRNP3 Missense_Mutation p.G512S 0.29 tolerated_low_confidence(0.95) benign(0.003) TCGA-D7-A6EY-01 2 168115749 168115750 - T XIRP2 3'UTR 0.11 TCGA-D7-A6EY-01 2 172187108 172187108 A G METTL8 Missense_Mutation p.I274T 0.21 deleterious(0) possibly_damaging(0.861) TCGA-D7-A6EY-01 2 172725276 172725276 G A SLC25A12 Missense_Mutation p.R42C 0.19 deleterious(0.01) possibly_damaging(0.677) TCGA-D7-A6EY-01 2 179312289 179312289 G A PRKRA Missense_Mutation p.A87V 0.17 deleterious(0.01) probably_damaging(0.99) TCGA-D7-A6EY-01 2 179718336 179718336 C T CCDC141 Missense_Mutation p.E1026K 0.14 tolerated(0.11) probably_damaging(0.977) TCGA-D7-A6EY-01 2 182780823 182780823 G A SSFA2 Missense_Mutation p.R819Q 0.14 tolerated(0.43) benign(0.004) TCGA-D7-A6EY-01 2 191919252 191919252 C A STAT4 Missense_Mutation p.K405N 0.20 deleterious(0) probably_damaging(0.962) TCGA-D7-A6EY-01 2 192228909 192228909 C T MYO1B Silent p.T313T 0.08 TCGA-D7-A6EY-01 2 196545469 196545469 A - SLC39A10 Frame_Shift_Del p.R238Gfs*84 0.09 TCGA-D7-A6EY-01 2 197085637 197085637 C - HECW2 Frame_Shift_Del p.G1392Vfs*19 0.09 TCGA-D7-A6EY-01 2 197872607 197872607 C T ANKRD44 Missense_Mutation p.A660T 0.06 tolerated(0.06) probably_damaging(0.998) TCGA-D7-A6EY-01 2 200213735 200213735 C T SATB2 Missense_Mutation p.A288T 0.21 tolerated(0.62) benign(0.001) TCGA-D7-A6EY-01 2 20162057 20162057 G A WDR35 Missense_Mutation p.T409M 0.14 tolerated(0.12) benign(0.001) TCGA-D7-A6EY-01 2 202082560 202082560 A T CASP10 3'UTR 0.14 TCGA-D7-A6EY-01 2 202467983 202467983 T C ALS2CR11 Missense_Mutation p.I112V 0.23 tolerated(0.51) benign(0.022) TCGA-D7-A6EY-01 2 202571652 202571652 G A ALS2 Silent p.R1499R 0.25 TCGA-D7-A6EY-01 2 204305625 204305625 G T RAPH1 Missense_Mutation p.P763H 0.20 benign(0.184) TCGA-D7-A6EY-01 2 207041601 207041601 C T GPR1 Missense_Mutation p.S124N 0.10 deleterious(0) probably_damaging(1) TCGA-D7-A6EY-01 2 210896239 210896239 T A KANSL1L Silent p.G687G 0.23 TCGA-D7-A6EY-01 2 21231146 21231146 T - APOB Frame_Shift_Del p.N2865Ifs*9 0.15 TCGA-D7-A6EY-01 2 21238075 21238076 - T APOB Frame_Shift_Ins p.M1189Nfs*14 0.19 TCGA-D7-A6EY-01 2 218683387 218683387 C T TNS1 Missense_Mutation p.S1119N 0.11 tolerated(0.38) benign(0.002) TCGA-D7-A6EY-01 2 219127775 219127775 C T GPBAR1 Missense_Mutation p.R110C 0.20 deleterious(0) probably_damaging(0.999) TCGA-D7-A6EY-01 2 219251888 219251888 C A SLC11A1 Missense_Mutation p.P169Q 0.26 deleterious(0) probably_damaging(1) TCGA-D7-A6EY-01 2 219302021 219302021 C A VIL1 Missense_Mutation p.P716T 0.13 deleterious(0.02) possibly_damaging(0.696) TCGA-D7-A6EY-01 2 219612339 219612339 C A TTLL4 Missense_Mutation p.L757I 0.15 deleterious(0) probably_damaging(0.98) TCGA-D7-A6EY-01 2 220037592 220037592 T C CNPPD1 Missense_Mutation p.T317A 0.16 tolerated_low_confidence(0.12) benign(0) TCGA-D7-A6EY-01 2 220108288 220108288 G T GLB1L Missense_Mutation p.P3H 0.16 deleterious_low_confidence(0.04) possibly_damaging(0.893) TCGA-D7-A6EY-01 2 220370392 220370392 T A GMPPA Intron 0.15 TCGA-D7-A6EY-01 2 220405041 220405041 C T CHPF Silent p.T464T 0.21 TCGA-D7-A6EY-01 2 220427342 220427342 C T OBSL1 Missense_Mutation p.R912H 0.38 tolerated(0.21) possibly_damaging(0.686) TCGA-D7-A6EY-01 2 223066639 223066639 C T PAX3 Intron 0.09 TCGA-D7-A6EY-01 2 223096997 223096997 C T PAX3 Missense_Mutation p.A198T 0.20 tolerated(0.13) benign(0.035) TCGA-D7-A6EY-01 2 231256879 231256879 G A SP140L Missense_Mutation p.A348T 0.20 tolerated(0.25) benign(0.058) TCGA-D7-A6EY-01 2 231741676 231741676 C T ITM2C Silent p.N185N 0.14 TCGA-D7-A6EY-01 2 234177 234181 CGCCA AGC SH3YL1 Frame_Shift_Del p.V128Gfs*43 0.23 TCGA-D7-A6EY-01 2 234591149 234591149 A G UGT1A7 Missense_Mutation p.Y189C 0.20 deleterious(0) probably_damaging(0.999) TCGA-D7-A6EY-01 2 242793327 242793327 G T PDCD1 Silent p.T250T 0.06 TCGA-D7-A6EY-01 2 242794488 242794488 G A PDCD1 Missense_Mutation p.P152S 0.28 tolerated(0.25) benign(0.236) TCGA-D7-A6EY-01 2 25180758 25180758 G A DNAJC27 Missense_Mutation p.A109V 0.16 tolerated(0.3) benign(0.01) TCGA-D7-A6EY-01 2 25387530 25387530 T C POMC Missense_Mutation p.T38A 0.20 tolerated(0.34) possibly_damaging(0.765) TCGA-D7-A6EY-01 2 26203974 26203974 G A KIF3C Silent p.G271G 0.15 TCGA-D7-A6EY-01 2 26204545 26204545 A G KIF3C Missense_Mutation p.L81P 0.09 probably_damaging(1) TCGA-D7-A6EY-01 2 26414132 26414132 T C HADHA Missense_Mutation p.K760R 0.14 tolerated(0.1) benign(0.074) TCGA-D7-A6EY-01 2 27278919 27278919 C T AGBL5 Silent p.G426G 0.18 TCGA-D7-A6EY-01 2 27322381 27322381 C T KHK Silent p.R249R 0.14 TCGA-D7-A6EY-01 2 27535898 27535898 C T MPV17 Missense_Mutation p.R50Q 0.08 deleterious(0) probably_damaging(0.92) TCGA-D7-A6EY-01 2 27587323 27587323 T C EIF2B4 Missense_Mutation p.M526V 0.13 tolerated(0.06) benign(0.219) TCGA-D7-A6EY-01 2 27707102 27707102 T C IFT172 Missense_Mutation p.I110V 0.09 tolerated(1) benign(0.002) TCGA-D7-A6EY-01 2 30454499 30454499 G A LBH 5'UTR 0.19 TCGA-D7-A6EY-01 2 31483592 31483593 - G EHD3 Frame_Shift_Ins p.K242Efs*25 0.21 TCGA-D7-A6EY-01 2 33413835 33413835 C A LTBP1 Missense_Mutation p.H540N 0.12 tolerated(0.42) benign(0.016) TCGA-D7-A6EY-01 2 3750034 3750034 G T ALLC Missense_Mutation p.V353F 0.18 tolerated(0.72) benign(0.004) TCGA-D7-A6EY-01 2 39262443 39262443 G A SOS1 Silent p.G328G 0.10 TCGA-D7-A6EY-01 2 39983101 39983101 C A THUMPD2 Splice_Site p.X298_splice 0.15 TCGA-D7-A6EY-01 2 44549898 44549898 G A PREPL Silent p.I664I 0.21 TCGA-D7-A6EY-01 2 48046160 48046160 C A FBXO11 Nonsense_Mutation p.G619* 0.09 TCGA-D7-A6EY-01 2 48589834 48589834 C T FOXN2 Nonsense_Mutation p.R231* 0.12 TCGA-D7-A6EY-01 2 54858499 54858499 G A SPTBN1 Silent p.E1105E 0.18 TCGA-D7-A6EY-01 2 60688143 60688143 C T BCL11A Missense_Mutation p.R635H 0.24 deleterious(0) possibly_damaging(0.522) TCGA-D7-A6EY-01 2 61236034 61236034 A G PUS10 Silent p.D81D 0.19 TCGA-D7-A6EY-01 2 68352342 68352342 A - WDR92 3'Flank 0.19 TCGA-D7-A6EY-01 2 68384436 68384436 T G WDR92 Missense_Mutation p.Q47P 0.16 deleterious(0.01) possibly_damaging(0.804) TCGA-D7-A6EY-01 2 68691336 68691336 T C FBXO48 3'UTR 0.09 TCGA-D7-A6EY-01 2 69351759 69351759 T C ANTXR1 Missense_Mutation p.I312T 0.23 deleterious(0) probably_damaging(0.99) TCGA-D7-A6EY-01 2 69664502 69664502 A G NFU1 Missense_Mutation p.L18P 0.15 tolerated(0.1) unknown(0) TCGA-D7-A6EY-01 2 70188545 70188545 A G ASPRV1 Silent p.S92S 0.11 TCGA-D7-A6EY-01 2 71825816 71825816 G A DYSF Missense_Mutation p.A1233T 0.17 deleterious(0.02) benign(0.009) TCGA-D7-A6EY-01 2 73172140 73172140 G A SFXN5 3'UTR 0.16 TCGA-D7-A6EY-01 2 74275221 74275222 - C TET3 Frame_Shift_Ins p.S594Ffs*18 0.20 TCGA-D7-A6EY-01 2 74757945 74757945 T A HTRA2 Silent p.T236T 0.21 TCGA-D7-A6EY-01 2 75196554 75196554 C T POLE4 3'UTR 0.18 TCGA-D7-A6EY-01 2 75921512 75921512 T C GCFC2 Missense_Mutation p.E292G 0.10 deleterious(0) probably_damaging(0.949) TCGA-D7-A6EY-01 2 80530420 80530420 A G LRRTM1 Silent p.F175F 0.27 TCGA-D7-A6EY-01 2 95481185 95481186 TT - ANKRD20A8P RNA 0.15 TCGA-D7-A6EY-01 2 95775728 95775728 T - MRPS5 Frame_Shift_Del p.G113Efs*14 0.20 TCGA-D7-A6EY-01 2 9630312 9630313 CT - ADAM17 Frame_Shift_Del p.E823Vfs*4 0.20 TCGA-D7-A6EY-01 2 96698081 96698081 G A GPAT2 Silent p.C9C 0.36 TCGA-D7-A6EY-01 2 99439662 99439662 C T KIAA1211L Silent p.P358P 0.23 TCGA-D7-A6EY-01 2 99788042 99788042 A - MITD1 Frame_Shift_Del p.R108Afs*13 0.10 TCGA-D7-A6EY-01 3 10133910 10133910 T C FANCD2 Missense_Mutation p.F1275L 0.17 tolerated(0.09) benign(0.379) TCGA-D7-A6EY-01 3 101383941 101383941 C T ZBTB11 Missense_Mutation p.G497D 0.19 tolerated_low_confidence(0.15) benign(0.046) TCGA-D7-A6EY-01 3 10145913 10145913 A C FANCD2OS 3'UTR 0.09 TCGA-D7-A6EY-01 3 101484459 101484459 T - CEP97 3'UTR 0.28 TCGA-D7-A6EY-01 3 10167974 10167974 A G BRK1 Missense_Mutation p.T75A 0.58 deleterious(0.01) benign(0.081) TCGA-D7-A6EY-01 3 10290943 10290943 C A TATDN2 Missense_Mutation p.P20H 0.24 deleterious_low_confidence(0) possibly_damaging(0.823) TCGA-D7-A6EY-01 3 10291294 10291294 T G TATDN2 Missense_Mutation p.L137R 0.13 tolerated(0.18) benign(0.035) TCGA-D7-A6EY-01 3 111936299 111936299 C A SLC9C1 Missense_Mutation p.G594C 0.12 tolerated(0.11) possibly_damaging(0.525) TCGA-D7-A6EY-01 3 112299704 112299704 A G SLC35A5 Missense_Mutation p.N247S 0.20 deleterious(0.05) possibly_damaging(0.639) TCGA-D7-A6EY-01 3 114058003 114058003 G - ZBTB20 Frame_Shift_Del p.P692Lfs*43 0.22 TCGA-D7-A6EY-01 3 119222827 119222827 A G TIMMDC1 Missense_Mutation p.Y159C 0.15 deleterious(0) probably_damaging(0.985) TCGA-D7-A6EY-01 3 121207488 121207489 - A POLQ Frame_Shift_Ins p.L1430Ffs*5 0.16 TCGA-D7-A6EY-01 3 121634166 121634166 T G SLC15A2 Splice_Site p.X207_splice 0.17 TCGA-D7-A6EY-01 3 122552268 122552268 C T DIRC2 Missense_Mutation p.R270W 0.05 tolerated(0.18) benign(0.206) TCGA-D7-A6EY-01 3 122944101 122944101 A G SEC22A Silent p.S166S 0.10 TCGA-D7-A6EY-01 3 126138588 126138588 G A CCDC37 Silent p.S280S 0.23 TCGA-D7-A6EY-01 3 127390319 127390319 C T PODXL2 Missense_Mutation p.R490W 0.18 deleterious(0) probably_damaging(0.932) TCGA-D7-A6EY-01 3 130285992 130285992 C A COL6A6 Missense_Mutation p.Q577K 0.12 tolerated(1) benign(0.006) TCGA-D7-A6EY-01 3 132320091 132320091 G A ACKR4 Missense_Mutation p.A284T 0.06 deleterious(0) probably_damaging(0.993) TCGA-D7-A6EY-01 3 134670658 134670658 G A EPHB1 Missense_Mutation p.R190H 0.06 tolerated(0.05) benign(0.117) TCGA-D7-A6EY-01 3 141164860 141164860 T - ZBTB38 3'UTR 0.20 TCGA-D7-A6EY-01 3 14200186 14200186 G A XPC Silent p.S399S 0.09 TCGA-D7-A6EY-01 3 142681230 142681230 A G PAQR9 Missense_Mutation p.F317L 0.08 tolerated(0.15) probably_damaging(0.973) TCGA-D7-A6EY-01 3 143691559 143691559 G A C3orf58 Missense_Mutation p.A129T 0.25 tolerated(0.1) probably_damaging(0.964) TCGA-D7-A6EY-01 3 14712474 14712474 C T CCDC174 Missense_Mutation p.P393S 0.27 deleterious(0) possibly_damaging(0.857) TCGA-D7-A6EY-01 3 149095199 149095199 A G TM4SF1 Missense_Mutation p.F46L 0.13 tolerated(0.79) possibly_damaging(0.527) TCGA-D7-A6EY-01 3 14940282 14940282 C T FGD5 Missense_Mutation p.R1035W 0.33 tolerated(0.13) possibly_damaging(0.899) TCGA-D7-A6EY-01 3 150804783 150804783 G A MED12L Missense_Mutation p.V24I 0.24 deleterious(0.03) possibly_damaging(0.796) TCGA-D7-A6EY-01 3 151545749 151545749 G A AADAC Missense_Mutation p.R330H 0.22 tolerated(0.22) benign(0.02) TCGA-D7-A6EY-01 3 153840069 153840069 G A ARHGEF26 Silent p.T96T 0.23 TCGA-D7-A6EY-01 3 16475359 16475359 T A RFTN1 Nonsense_Mutation p.R111* 0.18 TCGA-D7-A6EY-01 3 167248983 167248983 T A WDR49 Missense_Mutation p.N361I 0.10 tolerated(0.17) benign(0.003) TCGA-D7-A6EY-01 3 171452687 171452687 T A PLD1 Missense_Mutation p.M170L 0.13 tolerated(1) benign(0.01) TCGA-D7-A6EY-01 3 183966533 183966533 A G ALG3 Missense_Mutation p.Y66H 0.21 deleterious(0.01) possibly_damaging(0.9) TCGA-D7-A6EY-01 3 184018161 184018161 C A PSMD2 Missense_Mutation p.L96I 0.17 deleterious(0) probably_damaging(0.998) TCGA-D7-A6EY-01 3 185252634 185252634 A G LIPH Silent p.A112A 0.06 TCGA-D7-A6EY-01 3 186437926 186437926 C T KNG1 Silent p.Y76Y 0.09 TCGA-D7-A6EY-01 3 186953746 186953746 G A MASP1 Missense_Mutation p.S638L 0.27 tolerated(0.08) benign(0.031) TCGA-D7-A6EY-01 3 194117340 194117341 CT - GP5 Frame_Shift_Del p.R557Sfs*14 0.22 TCGA-D7-A6EY-01 3 194117442 194117442 A G GP5 Missense_Mutation p.F524L 0.17 tolerated(1) benign(0) TCGA-D7-A6EY-01 3 19575438 19575438 G T KCNH8 Missense_Mutation p.Q1057H 0.19 tolerated_low_confidence(0.16) benign(0.001) TCGA-D7-A6EY-01 3 196530020 196530020 A G PAK2 Missense_Mutation p.S141G 0.20 tolerated(0.1) benign(0.005) TCGA-D7-A6EY-01 3 196678828 196678828 C T PIGZ Nonsense_Mutation p.W25* 0.13 TCGA-D7-A6EY-01 3 36873242 36873242 A G TRANK1 Missense_Mutation p.L2567P 0.12 deleterious(0) probably_damaging(1) TCGA-D7-A6EY-01 3 38592986 38592986 C T SCN5A Missense_Mutation p.R1626H 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-D7-A6EY-01 3 38674719 38674719 C T SCN5A Missense_Mutation p.R27H 0.11 deleterious(0) possibly_damaging(0.9) TCGA-D7-A6EY-01 3 42605033 42605033 A G SEC22C Missense_Mutation p.Y110H 0.07 deleterious(0) probably_damaging(0.997) TCGA-D7-A6EY-01 3 44803035 44803035 G A KIAA1143 Silent p.R20R 0.12 TCGA-D7-A6EY-01 3 44945444 44945444 A G TGM4 Missense_Mutation p.Q347R 0.20 deleterious(0) probably_damaging(0.998) TCGA-D7-A6EY-01 3 45000851 45000851 T C ZDHHC3 Silent p.P26P 0.18 TCGA-D7-A6EY-01 3 46939588 46939588 G A PTH1R Missense_Mutation p.R150H 0.19 tolerated(0.55) benign(0.009) TCGA-D7-A6EY-01 3 47284551 47284551 G A KIF9 Missense_Mutation p.R567C 0.16 deleterious(0.03) possibly_damaging(0.676) TCGA-D7-A6EY-01 3 47742848 47742848 T A SMARCC1 Missense_Mutation p.D362V 0.17 deleterious(0) benign(0.058) TCGA-D7-A6EY-01 3 48436037 48436037 T C FBXW12 Silent p.S436S 0.10 TCGA-D7-A6EY-01 3 48456363 48456363 G A PLXNB1 Missense_Mutation p.R1352W 0.17 deleterious(0) possibly_damaging(0.713) TCGA-D7-A6EY-01 3 48500804 48500804 G A ATRIP Silent p.E292E 0.20 TCGA-D7-A6EY-01 3 48506423 48506423 A G ATRIP Missense_Mutation p.Q750R 0.21 deleterious(0.01) possibly_damaging(0.649) TCGA-D7-A6EY-01 3 48629533 48629533 A T COL7A1 Splice_Site p.X414_splice 0.10 TCGA-D7-A6EY-01 3 49137627 49137627 A T QARS Missense_Mutation p.F387Y 0.13 deleterious(0) probably_damaging(0.999) TCGA-D7-A6EY-01 3 51418535 51418535 G A DOCK3 Missense_Mutation p.G1880S 0.15 tolerated_low_confidence(0.17) probably_damaging(0.999) TCGA-D7-A6EY-01 3 51431408 51431408 G A RBM15B Missense_Mutation p.D860N 0.28 tolerated(0.09) benign(0.079) TCGA-D7-A6EY-01 3 52416377 52416377 A G DNAH1 Missense_Mutation p.Y2616C 0.09 probably_damaging(1) TCGA-D7-A6EY-01 3 52491936 52491936 T C NISCH Silent p.H57H 0.05 TCGA-D7-A6EY-01 3 52557042 52557042 T G STAB1 Missense_Mutation p.D2304E 0.15 tolerated(0.12) possibly_damaging(0.831) TCGA-D7-A6EY-01 3 52833463 52833463 A G ITIH3 Missense_Mutation p.I289V 0.14 deleterious(0.03) probably_damaging(0.964) TCGA-D7-A6EY-01 3 55504442 55504442 G A WNT5A Missense_Mutation p.A274V 0.24 tolerated(0.22) benign(0.021) TCGA-D7-A6EY-01 3 56207547 56207547 T G ERC2 Missense_Mutation p.E359A 0.13 deleterious(0) possibly_damaging(0.507) TCGA-D7-A6EY-01 3 58619910 58619910 C - FAM3D 3'UTR 0.14 TCGA-D7-A6EY-01 3 65342509 65342509 G A MAGI1 Silent p.R1311R 0.18 TCGA-D7-A6EY-01 3 67570962 67570962 G - SUCLG2 Frame_Shift_Del p.Q172Rfs*28 0.15 TCGA-D7-A6EY-01 3 71804120 71804120 G A GPR27 Missense_Mutation p.R307Q 0.08 deleterious(0.03) probably_damaging(0.997) TCGA-D7-A6EY-01 3 87018160 87018160 T C VGLL3 Missense_Mutation p.T173A 0.16 tolerated(0.14) benign(0.001) TCGA-D7-A6EY-01 3 96533505 96533505 C T EPHA6 Missense_Mutation p.P13L 0.14 tolerated_low_confidence(0.63) unknown(0) TCGA-D7-A6EY-01 3 97869016 97869016 G A OR5H14 Missense_Mutation p.A263T 0.23 tolerated(0.11) benign(0.014) TCGA-D7-A6EY-01 3 9959028 9959028 T A IL17RC Nonsense_Mutation p.L10* 0.09 TCGA-D7-A6EY-01 4 103870469 103870469 T C SLC9B1 Silent p.G109G 0.22 TCGA-D7-A6EY-01 4 103952952 103952952 T - SLC9B2 Frame_Shift_Del p.K387Rfs*2 0.17 TCGA-D7-A6EY-01 4 113333120 113333120 G A ALPK1 Silent p.Q138Q 0.13 TCGA-D7-A6EY-01 4 113351686 113351686 C T ALPK1 Missense_Mutation p.A328V 0.07 deleterious(0) probably_damaging(1) TCGA-D7-A6EY-01 4 113475112 113475112 C T C4orf21 Missense_Mutation p.S1742N 0.10 tolerated(1) benign(0.003) TCGA-D7-A6EY-01 4 129920943 129920943 T - SCLT1 Frame_Shift_Del p.T145Lfs*25 0.18 TCGA-D7-A6EY-01 4 13543850 13543850 G A NKX3-2 Missense_Mutation p.R257C 0.17 deleterious(0) probably_damaging(1) TCGA-D7-A6EY-01 4 13606035 13606035 C T BOD1L1 Missense_Mutation p.R830H 0.19 benign(0) TCGA-D7-A6EY-01 4 1388791 1388791 G A CRIPAK Silent p.V164V 0.05 TCGA-D7-A6EY-01 4 140468077 140468077 C T SETD7 Missense_Mutation p.G56D 0.06 tolerated(0.08) possibly_damaging(0.533) TCGA-D7-A6EY-01 4 142643156 142643156 A G IL15 Missense_Mutation p.I64V 0.20 tolerated(0.06) benign(0.259) TCGA-D7-A6EY-01 4 144135652 144135652 A G USP38 Silent p.L841L 0.18 TCGA-D7-A6EY-01 4 146823515 146823515 G A ZNF827 Missense_Mutation p.A299V 0.09 deleterious(0) probably_damaging(0.994) TCGA-D7-A6EY-01 4 148800405 148800405 T A ARHGAP10 Missense_Mutation p.S285R 0.17 deleterious(0) probably_damaging(0.994) TCGA-D7-A6EY-01 4 149115967 149115967 A G NR3C2 Silent p.D648D 0.06 TCGA-D7-A6EY-01 4 151504263 151504263 G A MAB21L2 Missense_Mutation p.A28T 0.14 tolerated(0.57) benign(0.002) TCGA-D7-A6EY-01 4 153249385 153249385 G A FBXW7 Missense_Mutation p.R465C 0.17 deleterious(0) probably_damaging(1) TCGA-D7-A6EY-01 4 153897640 153897640 A T FHDC1 Missense_Mutation p.Q1066L 0.16 tolerated(0.09) benign(0.139) TCGA-D7-A6EY-01 4 15539567 15539567 G A CC2D2A Missense_Mutation p.G604S 0.14 tolerated(0.6) benign(0.01) TCGA-D7-A6EY-01 4 156136004 156136004 C T NPY2R Missense_Mutation p.L305F 0.25 deleterious(0) probably_damaging(0.975) TCGA-D7-A6EY-01 4 160275098 160275098 C T RAPGEF2 Silent p.A1356A 0.06 TCGA-D7-A6EY-01 4 164534608 164534608 T - MARCH1 Intron 0.14 TCGA-D7-A6EY-01 4 166243282 166243282 A C KLHL2 3'UTR 0.38 TCGA-D7-A6EY-01 4 166795224 166795224 C T TLL1 Silent p.A56A 0.22 TCGA-D7-A6EY-01 4 169294890 169294890 A G DDX60L Missense_Mutation p.V1568A 0.06 tolerated(0.51) benign(0.001) TCGA-D7-A6EY-01 4 170077694 170077694 T C SH3RF1 Missense_Mutation p.N177S 0.21 tolerated(0.13) benign(0.019) TCGA-D7-A6EY-01 4 170523229 170523229 T C NEK1 Silent p.S48S 0.20 TCGA-D7-A6EY-01 4 170674860 170674860 A G C4orf27 Missense_Mutation p.F59L 0.11 deleterious(0.03) possibly_damaging(0.728) TCGA-D7-A6EY-01 4 170926834 170926835 - A MFAP3L Frame_Shift_Ins p.L65Ffs*3 0.11 TCGA-D7-A6EY-01 4 1730092 1730092 A T TACC3 Missense_Mutation p.E321D 0.24 deleterious(0.02) possibly_damaging(0.856) TCGA-D7-A6EY-01 4 177142692 177142692 A T ASB5 Missense_Mutation p.S148R 0.14 deleterious(0.01) probably_damaging(0.964) TCGA-D7-A6EY-01 4 185320161 185320161 T G IRF2 Missense_Mutation p.Q201P 0.10 tolerated(0.1) probably_damaging(0.986) TCGA-D7-A6EY-01 4 186299233 186299233 A G LRP2BP Splice_Site p.X36_splice 0.13 TCGA-D7-A6EY-01 4 187454960 187454960 C T MTNR1A Silent p.S312S 0.18 TCGA-D7-A6EY-01 4 187539921 187539921 A G FAT1 Missense_Mutation p.S2607P 0.17 possibly_damaging(0.799) TCGA-D7-A6EY-01 4 1957069 1957069 T C WHSC1 Splice_Site p.X840_splice 0.19 TCGA-D7-A6EY-01 4 2306283 2306283 T C ZFYVE28 Missense_Mutation p.Y595C 0.21 tolerated_low_confidence(0.07) possibly_damaging(0.765) TCGA-D7-A6EY-01 4 24839015 24839015 G A CCDC149 Missense_Mutation p.S166F 0.21 deleterious(0.02) possibly_damaging(0.789) TCGA-D7-A6EY-01 4 2695450 2695450 T C FAM193A Missense_Mutation p.S690P 0.10 tolerated(0.39) probably_damaging(0.969) TCGA-D7-A6EY-01 4 2877675 2877675 C A ADD1 Silent p.T11T 0.09 TCGA-D7-A6EY-01 4 36083891 36083891 T C ARAP2 Missense_Mutation p.Y1509C 0.15 tolerated(0.06) benign(0.018) TCGA-D7-A6EY-01 4 39450218 39450218 T - KLB Frame_Shift_Del p.Q1018Kfs*19 0.17 TCGA-D7-A6EY-01 4 41621388 41621389 - AG LIMCH1 Frame_Shift_Ins p.E293Rfs*61 0.14 TCGA-D7-A6EY-01 4 42088254 42088254 T - SLC30A9 3'UTR 0.27 TCGA-D7-A6EY-01 4 493128 493128 C T PIGG Missense_Mutation p.R2W 0.19 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-D7-A6EY-01 4 56316280 56316280 G A CLOCK Silent p.H442H 0.26 TCGA-D7-A6EY-01 4 57181595 57181595 G A KIAA1211 Missense_Mutation p.G643S 0.13 tolerated(0.82) probably_damaging(0.935) TCGA-D7-A6EY-01 4 57181887 57181887 C T KIAA1211 Missense_Mutation p.T740M 0.07 tolerated(0.09) benign(0.035) TCGA-D7-A6EY-01 4 5838533 5838533 C T CRMP1 Missense_Mutation p.G471R 0.24 deleterious(0) probably_damaging(1) TCGA-D7-A6EY-01 4 6082017 6082017 G A JAKMIP1 Missense_Mutation p.A375V 0.14 tolerated(0.34) benign(0.044) TCGA-D7-A6EY-01 4 6325191 6325191 G A PPP2R2C Silent p.C394C 0.06 TCGA-D7-A6EY-01 4 68725389 68725389 G A TMPRSS11D Missense_Mutation p.R6C 0.23 tolerated(0.15) possibly_damaging(0.794) TCGA-D7-A6EY-01 4 68919690 68919690 T - TMPRSS11F Frame_Shift_Del p.K418Nfs*8 0.10 TCGA-D7-A6EY-01 4 76894534 76894534 G A SDAD1 Missense_Mutation p.A216V 0.16 deleterious(0.01) benign(0.24) TCGA-D7-A6EY-01 4 7714482 7714482 C T SORCS2 Missense_Mutation p.R631C 0.23 deleterious(0) probably_damaging(1) TCGA-D7-A6EY-01 4 77274364 77274364 T - CCDC158 Frame_Shift_Del p.N786Tfs*17 0.23 TCGA-D7-A6EY-01 4 77691990 77691990 G A SHROOM3 Missense_Mutation p.R1854H 0.23 deleterious(0) probably_damaging(0.988) TCGA-D7-A6EY-01 4 77817773 77817773 A G SOWAHB Silent p.S410S 0.15 TCGA-D7-A6EY-01 4 77969357 77969357 T C CCNI 3'UTR 0.17 TCGA-D7-A6EY-01 4 82065395 82065396 - T PRKG2 Frame_Shift_Ins p.R415Kfs*9 0.17 TCGA-D7-A6EY-01 4 8214443 8214443 T A SH3TC1 Missense_Mutation p.L88Q 0.07 deleterious(0) probably_damaging(0.989) TCGA-D7-A6EY-01 4 85678302 85678302 C T WDFY3 Missense_Mutation p.G1734D 0.08 tolerated(0.12) benign(0.443) TCGA-D7-A6EY-01 4 89591035 89591035 C T HERC3 Missense_Mutation p.P553L 0.14 deleterious(0.05) benign(0.129) TCGA-D7-A6EY-01 4 90170124 90170124 G - GPRIN3 Frame_Shift_Del p.Q380Rfs*61 0.19 TCGA-D7-A6EY-01 4 90170781 90170781 T C GPRIN3 Missense_Mutation p.T161A 0.20 tolerated(0.11) benign(0.435) TCGA-D7-A6EY-01 4 94751046 94751046 G A ATOH1 Silent p.V323V 0.07 TCGA-D7-A6EY-01 4 96090351 96090351 T - UNC5C 3'UTR 0.22 TCGA-D7-A6EY-01 4 984935 984935 A G SLC26A1 Missense_Mutation p.L186P 0.14 deleterious(0) possibly_damaging(0.878) TCGA-D7-A6EY-01 4 985155 985155 A G SLC26A1 Missense_Mutation p.F113L 0.06 deleterious(0.02) possibly_damaging(0.872) TCGA-D7-A6EY-01 4 99397428 99397428 G A TSPAN5 Missense_Mutation p.T218M 0.08 deleterious(0.03) benign(0.137) TCGA-D7-A6EY-01 5 1081834 1081834 G A SLC12A7 Silent p.H385H 0.08 TCGA-D7-A6EY-01 5 112178969 112178969 C T APC Nonsense_Mutation p.R2560* 0.10 TCGA-D7-A6EY-01 5 1255506 1255506 T C TERT Missense_Mutation p.Q1018R 0.13 tolerated(0.09) benign(0.082) TCGA-D7-A6EY-01 5 126774179 126774179 G A MEGF10 Missense_Mutation p.C718Y 0.14 deleterious(0.04) probably_damaging(0.998) TCGA-D7-A6EY-01 5 126776437 126776437 C T MEGF10 Missense_Mutation p.P747L 0.18 deleterious(0.03) probably_damaging(0.999) TCGA-D7-A6EY-01 5 127782174 127782174 C A FBN2 Missense_Mutation p.D318Y 0.17 deleterious(0) probably_damaging(0.917) TCGA-D7-A6EY-01 5 131007941 131007941 T - FNIP1 Frame_Shift_Del p.K732Nfs*23 0.11 TCGA-D7-A6EY-01 5 132101190 132101190 A G SEPT8 Missense_Mutation p.L21P 0.10 tolerated(0.06) probably_damaging(0.968) TCGA-D7-A6EY-01 5 132545933 132545934 - T FSTL4 Frame_Shift_Ins p.V556Sfs*40 0.17 TCGA-D7-A6EY-01 5 132561501 132561501 G A FSTL4 Silent p.V342V 0.14 TCGA-D7-A6EY-01 5 132648366 132648366 C T FSTL4 Missense_Mutation p.R236H 0.22 tolerated(0.52) benign(0.001) TCGA-D7-A6EY-01 5 133643944 133643944 C A CDKL3 Missense_Mutation p.G417C 0.06 deleterious(0.02) possibly_damaging(0.572) TCGA-D7-A6EY-01 5 133895541 133895541 C - JADE2 Frame_Shift_Del p.P113Lfs*53 0.18 TCGA-D7-A6EY-01 5 137504163 137504163 C A BRD8 Intron 0.12 TCGA-D7-A6EY-01 5 137515433 137515434 - A KIF20A Frame_Shift_Ins p.P22Hfs*4 0.13 TCGA-D7-A6EY-01 5 138456784 138456784 G A SIL1 Silent p.L62L 0.05 TCGA-D7-A6EY-01 5 138700371 138700371 A T PAIP2 Missense_Mutation p.Q86L 0.19 deleterious(0.01) benign(0.009) TCGA-D7-A6EY-01 5 139006444 139006444 A T UBE2D2 3'UTR 0.12 TCGA-D7-A6EY-01 5 139947625 139947625 G A SLC35A4 Missense_Mutation p.A291T 0.09 tolerated(0.61) probably_damaging(0.948) TCGA-D7-A6EY-01 5 140167575 140167575 C T PCDHA1 Missense_Mutation p.A567V 0.16 tolerated_low_confidence(0.15) benign(0.013) TCGA-D7-A6EY-01 5 140167983 140167983 C A PCDHA1 Missense_Mutation p.A703D 0.07 deleterious_low_confidence(0) possibly_damaging(0.788) TCGA-D7-A6EY-01 5 140222026 140222026 G A PCDHA8 Missense_Mutation p.V374M 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.83) TCGA-D7-A6EY-01 5 140237173 140237173 G A PCDHA10 Missense_Mutation p.G514S 0.14 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-D7-A6EY-01 5 140257217 140257217 G A PCDHA12 Silent p.A720A 0.13 TCGA-D7-A6EY-01 5 140433152 140433152 C T PCDHB1 Silent p.S699S 0.17 TCGA-D7-A6EY-01 5 140529755 140529755 G A PCDHB6 5'Flank 0.14 TCGA-D7-A6EY-01 5 140589820 140589820 C T PCDHB12 Silent p.N447N 0.18 TCGA-D7-A6EY-01 5 140723859 140723859 G A PCDHGA3 Missense_Mutation p.A87T 0.22 deleterious_low_confidence(0.01) benign(0.396) TCGA-D7-A6EY-01 5 140736441 140736441 T C PCDHGA4 Silent p.N558N 0.06 TCGA-D7-A6EY-01 5 140753794 140753794 C T PCDHGA6 Silent p.I48I 0.15 TCGA-D7-A6EY-01 5 140754512 140754512 A G PCDHGA6 Missense_Mutation p.I288V 0.09 tolerated_low_confidence(0.3) benign(0.021) TCGA-D7-A6EY-01 5 140762853 140762853 C T PCDHGA7 Silent p.N129N 0.21 TCGA-D7-A6EY-01 5 140810464 140810464 C T PCDHGA12 Silent p.G46G 0.08 TCGA-D7-A6EY-01 5 145428715 145428716 - G SH3RF2 Frame_Shift_Ins p.K412Efs*34 0.18 TCGA-D7-A6EY-01 5 145442268 145442268 T C SH3RF2 3'UTR 0.06 TCGA-D7-A6EY-01 5 145895251 145895251 G A GPR151 Silent p.D142D 0.08 TCGA-D7-A6EY-01 5 147813008 147813008 G A FBXO38 Missense_Mutation p.R817H 0.10 deleterious(0.01) benign(0.356) TCGA-D7-A6EY-01 5 149247314 149247314 G A PDE6A Missense_Mutation p.R750C 0.23 deleterious(0) probably_damaging(0.998) TCGA-D7-A6EY-01 5 150050180 150050180 T G MYOZ3 Missense_Mutation p.L66V 0.33 tolerated(0.48) benign(0.41) TCGA-D7-A6EY-01 5 150914046 150914046 G A FAT2 Silent p.H3117H 0.16 TCGA-D7-A6EY-01 5 151266343 151266343 G - GLRA1 Frame_Shift_Del p.P64Qfs*2 0.13 TCGA-D7-A6EY-01 5 154065380 154065383 TTTA - MIR1303 RNA 0.08 TCGA-D7-A6EY-01 5 154183217 154183217 G A LARP1 Missense_Mutation p.R707H 0.22 deleterious(0.03) probably_damaging(0.999) TCGA-D7-A6EY-01 5 167642184 167642184 G A TENM2 Missense_Mutation p.V1329M 0.18 deleterious(0.01) possibly_damaging(0.808) TCGA-D7-A6EY-01 5 167826546 167826546 A G WWC1 Silent p.K188K 0.11 TCGA-D7-A6EY-01 5 168201356 168201356 G A SLIT3 Silent p.C393C 0.17 TCGA-D7-A6EY-01 5 175819794 175819794 T A CLTB Missense_Mutation p.Q224L 0.09 deleterious(0) probably_damaging(0.999) TCGA-D7-A6EY-01 5 176518710 176518710 G A FGFR4 Missense_Mutation p.V210M 0.19 deleterious(0) probably_damaging(1) TCGA-D7-A6EY-01 5 176734602 176734602 C G MXD3 Missense_Mutation p.G203A 0.15 tolerated(0.6) benign(0.001) TCGA-D7-A6EY-01 5 176824038 176824038 T A SLC34A1 Missense_Mutation p.L460Q 0.08 deleterious(0) probably_damaging(0.996) TCGA-D7-A6EY-01 5 177548911 177548911 A G N4BP3 Missense_Mutation p.Y515C 0.19 deleterious(0) probably_damaging(0.999) TCGA-D7-A6EY-01 5 177636438 177636438 T A HNRNPAB Silent p.G259G 0.19 TCGA-D7-A6EY-01 5 180166230 180166230 A - OR2Y1 Frame_Shift_Del p.Y277Ifs*3 0.08 TCGA-D7-A6EY-01 5 180376246 180376246 A T BTNL8 Missense_Mutation p.R281S 0.10 tolerated(0.05) possibly_damaging(0.477) TCGA-D7-A6EY-01 5 256535 256535 A G SDHA Nonstop_Mutation p.*665Wext*1 0.12 TCGA-D7-A6EY-01 5 39202748 39202748 C T FYB Silent p.A115A 0.18 TCGA-D7-A6EY-01 5 40771943 40771943 C T PRKAA1 Missense_Mutation p.R144H 0.11 tolerated(0.12) probably_damaging(0.999) TCGA-D7-A6EY-01 5 43280273 43280273 C T NIM1K Silent p.Y251Y 0.09 TCGA-D7-A6EY-01 5 54654434 54654434 C T SKIV2L2 Missense_Mutation p.R523C 0.12 deleterious(0) probably_damaging(1) TCGA-D7-A6EY-01 5 59064326 59064326 G A PDE4D Intron 0.17 TCGA-D7-A6EY-01 5 65320161 65320161 T C ERBB2IP Missense_Mutation p.Y234H 0.23 tolerated(0.09) probably_damaging(1) TCGA-D7-A6EY-01 5 6742670 6742670 C T PAPD7 Missense_Mutation p.T109M 0.16 deleterious(0) probably_damaging(0.993) TCGA-D7-A6EY-01 5 67569270 67569270 G A PIK3R1 Silent p.P129P 0.06 TCGA-D7-A6EY-01 5 70808205 70808205 G T BDP1 Missense_Mutation p.Q1399H 0.06 tolerated(0.06) possibly_damaging(0.591) TCGA-D7-A6EY-01 5 71491223 71491223 A - MAP1B Frame_Shift_Del p.E683Kfs*39 0.36 TCGA-D7-A6EY-01 5 72182911 72182911 G A TNPO1 Missense_Mutation p.A389T 0.13 deleterious(0.03) benign(0.009) TCGA-D7-A6EY-01 5 72868365 72868365 T G UTP15 Missense_Mutation p.V242G 0.06 tolerated(0.05) possibly_damaging(0.465) TCGA-D7-A6EY-01 5 79616966 79616966 G A SPZ1 Missense_Mutation p.S311N 0.14 tolerated(0.64) benign(0.002) TCGA-D7-A6EY-01 5 86628364 86628364 C T RASA1 Missense_Mutation p.R245C 0.17 deleterious(0) probably_damaging(0.916) TCGA-D7-A6EY-01 5 95734632 95734632 A C PCSK1 Missense_Mutation p.I513M 0.13 tolerated(0.06) possibly_damaging(0.683) TCGA-D7-A6EY-01 5 96086366 96086366 C - CAST Frame_Shift_Del p.P462Lfs*6 0.12 TCGA-D7-A6EY-01 5 96333777 96333777 T C LNPEP Silent p.S527S 0.08 TCGA-D7-A6EY-01 5 96430438 96430438 G C LIX1 3'UTR 0.13 TCGA-D7-A6EY-01 5 96460266 96460266 A G LIX1 Silent p.S50S 0.08 TCGA-D7-A6EY-01 6 10764689 10764689 C T MAK Missense_Mutation p.R623Q 0.16 deleterious(0.02) possibly_damaging(0.465) TCGA-D7-A6EY-01 6 10874697 10874697 A C GCM2 Missense_Mutation p.F351C 0.19 tolerated(0.26) benign(0.002) TCGA-D7-A6EY-01 6 109286219 109286219 T A ARMC2 Missense_Mutation p.D774E 0.07 deleterious(0) probably_damaging(1) TCGA-D7-A6EY-01 6 109767595 109767595 C G MICAL1 Missense_Mutation p.E775D 0.09 tolerated(0.36) benign(0.002) TCGA-D7-A6EY-01 6 110763589 110763589 T C SLC22A16 Silent p.S347S 0.11 TCGA-D7-A6EY-01 6 112671149 112671149 T G RFPL4B Missense_Mutation p.L80R 0.19 deleterious(0) possibly_damaging(0.794) TCGA-D7-A6EY-01 6 116836954 116836954 T - FAM26E Frame_Shift_Del p.F246Lfs*75 0.12 TCGA-D7-A6EY-01 6 117127708 117127708 T G GPRC6A Missense_Mutation p.K387T 0.07 tolerated(0.27) benign(0.002) TCGA-D7-A6EY-01 6 117715401 117715402 - A ROS1 Frame_Shift_Ins p.Y363Lfs*25 0.26 TCGA-D7-A6EY-01 6 119301423 119301423 C T FAM184A Silent p.Q727Q 0.14 TCGA-D7-A6EY-01 6 121638708 121638709 - T TBC1D32 Frame_Shift_Ins p.I143Nfs*8 0.11 TCGA-D7-A6EY-01 6 125584120 125584120 G A TPD52L1 3'UTR 0.24 TCGA-D7-A6EY-01 6 126210258 126210258 A G NCOA7 Missense_Mutation p.K353R 0.12 tolerated_low_confidence(0.06) benign(0.15) TCGA-D7-A6EY-01 6 129621928 129621928 C T LAMA2 Nonsense_Mutation p.R1029* 0.13 TCGA-D7-A6EY-01 6 131222276 131222276 C T EPB41L2 Missense_Mutation p.R325H 0.14 deleterious(0.02) benign(0.003) TCGA-D7-A6EY-01 6 131915392 131915392 C T MED23 Missense_Mutation p.V1027I 0.20 deleterious(0.03) benign(0.084) TCGA-D7-A6EY-01 6 133046036 133046036 T G VNN3 Missense_Mutation p.N207T 0.09 deleterious_low_confidence(0) unknown(0) TCGA-D7-A6EY-01 6 13306757 13306757 A C TBC1D7 Missense_Mutation p.V223G 0.20 deleterious(0) possibly_damaging(0.859) TCGA-D7-A6EY-01 6 133783496 133783496 C T EYA4 Missense_Mutation p.T154I 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-D7-A6EY-01 6 134210721 134210721 G A TCF21 Silent p.A62A 0.26 TCGA-D7-A6EY-01 6 134582973 134582973 A - SGK1 Intron 0.33 TCGA-D7-A6EY-01 6 135286382 135286382 A G HBS1L 3'UTR 0.12 TCGA-D7-A6EY-01 6 144081763 144081763 C T PHACTR2 Missense_Mutation p.T227M 0.06 deleterious(0.01) possibly_damaging(0.708) TCGA-D7-A6EY-01 6 151673958 151673958 G A AKAP12 Missense_Mutation p.D1478N 0.27 tolerated(0.06) benign(0.034) TCGA-D7-A6EY-01 6 158294203 158294203 G A SNX9 Missense_Mutation p.V57I 0.10 tolerated(0.17) probably_damaging(0.99) TCGA-D7-A6EY-01 6 158735158 158735158 G T TULP4 Missense_Mutation p.R37M 0.11 deleterious(0) probably_damaging(0.997) TCGA-D7-A6EY-01 6 160963770 160963770 C - LPA Frame_Shift_Del p.C1824Vfs*27 0.19 TCGA-D7-A6EY-01 6 161470589 161470589 A T MAP3K4 Missense_Mutation p.I429F 0.08 tolerated(0.1) probably_damaging(0.998) TCGA-D7-A6EY-01 6 168265375 168265375 C T MLLT4 Nonsense_Mutation p.R84* 0.18 TCGA-D7-A6EY-01 6 169648548 169648548 G A THBS2 Silent p.Y191Y 0.07 TCGA-D7-A6EY-01 6 25600666 25600666 C T LRRC16A Nonsense_Mutation p.R1082* 0.24 TCGA-D7-A6EY-01 6 25600904 25600904 A G LRRC16A Missense_Mutation p.Q1161R 0.24 tolerated_low_confidence(0.26) probably_damaging(0.968) TCGA-D7-A6EY-01 6 2623926 2623926 G A C6orf195 Missense_Mutation p.A44V 0.23 tolerated_low_confidence(0.06) possibly_damaging(0.682) TCGA-D7-A6EY-01 6 26448645 26448645 C T BTN3A3 Silent p.Y295Y 0.24 TCGA-D7-A6EY-01 6 27783154 27783154 C T HIST1H2BM Silent p.A111A 0.20 TCGA-D7-A6EY-01 6 29591129 29591129 A G GABBR1 Missense_Mutation p.W306R 0.12 deleterious(0) probably_damaging(0.997) TCGA-D7-A6EY-01 6 29794819 29794819 A G HLA-G Intron 0.39 TCGA-D7-A6EY-01 6 30080441 30080443 ATG - TRIM31 In_Frame_Del p.S47del 0.21 TCGA-D7-A6EY-01 6 30309799 30309799 A G TRIM39 Silent p.A440A 0.17 TCGA-D7-A6EY-01 6 30576685 30576685 A T PPP1R10 Silent p.I67I 0.10 TCGA-D7-A6EY-01 6 30623093 30623094 AG - DHX16 Frame_Shift_Del p.S894Ffs*6 0.12 TCGA-D7-A6EY-01 6 31083712 31083712 C A CDSN 3'UTR 0.14 TCGA-D7-A6EY-01 6 31644849 31644849 A G LY6G5C Missense_Mutation p.M113T 0.10 tolerated(0.05) possibly_damaging(0.471) TCGA-D7-A6EY-01 6 31696720 31696720 C T DDAH2 Silent p.P73P 0.22 TCGA-D7-A6EY-01 6 31765402 31765402 A - LSM2 3'UTR 0.20 TCGA-D7-A6EY-01 6 31918063 31918063 C T CFB Missense_Mutation p.R1005C 0.20 deleterious(0) probably_damaging(1) TCGA-D7-A6EY-01 6 32037370 32037370 G A TNXB Silent p.H1849H 0.12 TCGA-D7-A6EY-01 6 32805986 32805986 A G TAP2 Missense_Mutation p.W9R 0.09 deleterious_low_confidence(0) unknown(0) TCGA-D7-A6EY-01 6 32940575 32940576 - C BRD2 5'UTR 0.10 TCGA-D7-A6EY-01 6 33281098 33281098 G T TAPBP Missense_Mutation p.A122D 0.17 tolerated(0.95) benign(0.003) TCGA-D7-A6EY-01 6 33284315 33284315 A G ZBTB22 Missense_Mutation p.F127L 0.12 deleterious(0.03) benign(0.223) TCGA-D7-A6EY-01 6 33374112 33374112 C - KIFC1 Frame_Shift_Del p.L561Sfs*16 0.20 TCGA-D7-A6EY-01 6 33643504 33643504 C T ITPR3 Silent p.G1051G 0.17 TCGA-D7-A6EY-01 6 34498086 34498086 A G PACSIN1 Silent p.R285R 0.09 TCGA-D7-A6EY-01 6 34512099 34512099 G T SPDEF Missense_Mutation p.P45H 0.11 deleterious_low_confidence(0) probably_damaging(0.945) TCGA-D7-A6EY-01 6 348269 348269 C A DUSP22 Missense_Mutation p.H144N 0.08 tolerated(0.49) benign(0) TCGA-D7-A6EY-01 6 34850723 34850723 C T TAF11 Silent p.E102E 0.12 TCGA-D7-A6EY-01 6 35047321 35047322 - C ANKS1A Frame_Shift_Ins p.S774* 0.18 TCGA-D7-A6EY-01 6 35289041 35289041 C T DEF6 Missense_Mutation p.R584C 0.15 tolerated(0.06) benign(0.072) TCGA-D7-A6EY-01 6 35393770 35393770 G A PPARD Missense_Mutation p.A414T 0.23 deleterious(0.01) probably_damaging(0.954) TCGA-D7-A6EY-01 6 35704937 35704937 G A ARMC12 Missense_Mutation p.V18I 0.28 tolerated(0.15) benign(0.016) TCGA-D7-A6EY-01 6 36930811 36930811 T C PI16 Silent p.G231G 0.12 TCGA-D7-A6EY-01 6 39284038 39284038 G T KCNK16 Intron 0.30 TCGA-D7-A6EY-01 6 39304311 39304311 A T KIF6 Missense_Mutation p.N814K 0.19 deleterious_low_confidence(0.01) benign(0.243) TCGA-D7-A6EY-01 6 39864707 39864707 C T DAAM2 Missense_Mutation p.R821W 0.10 deleterious(0) probably_damaging(0.958) TCGA-D7-A6EY-01 6 39869787 39869787 C T DAAM2 Missense_Mutation p.R1061W 0.13 deleterious(0) probably_damaging(0.997) TCGA-D7-A6EY-01 6 41557870 41557870 G A FOXP4 Missense_Mutation p.R440Q 0.16 deleterious(0) probably_damaging(0.991) TCGA-D7-A6EY-01 6 41565595 41565595 T A FOXP4 Missense_Mutation p.L601Q 0.19 deleterious(0.04) probably_damaging(0.999) TCGA-D7-A6EY-01 6 42034054 42034054 A G TAF8 Missense_Mutation p.Y165C 0.08 deleterious(0.03) possibly_damaging(0.905) TCGA-D7-A6EY-01 6 42832619 42832619 A C GLTSCR1L Missense_Mutation p.N892T 0.22 tolerated_low_confidence(0.91) benign(0.004) TCGA-D7-A6EY-01 6 43016171 43016171 T C CUL7 Silent p.P738P 0.04 TCGA-D7-A6EY-01 6 43016176 43016176 T A CUL7 Nonsense_Mutation p.K737* 0.04 TCGA-D7-A6EY-01 6 43267740 43267740 C T SLC22A7 Missense_Mutation p.R255W 0.14 deleterious(0.02) probably_damaging(1) TCGA-D7-A6EY-01 6 43412532 43412532 G A ABCC10 Missense_Mutation p.R899Q 0.23 deleterious(0.01) possibly_damaging(0.501) TCGA-D7-A6EY-01 6 43415452 43415452 G A ABCC10 Missense_Mutation p.V1246M 0.23 deleterious(0.02) possibly_damaging(0.542) TCGA-D7-A6EY-01 6 43581996 43581996 A C POLH Missense_Mutation p.E615A 0.14 tolerated(0.19) benign(0.002) TCGA-D7-A6EY-01 6 44147858 44147858 A G CAPN11 Missense_Mutation p.D533G 0.29 deleterious(0) probably_damaging(0.993) TCGA-D7-A6EY-01 6 44226931 44226931 T C NFKBIE 3'UTR 0.06 TCGA-D7-A6EY-01 6 44272267 44272267 C - AARS2 Frame_Shift_Del p.V586Cfs*5 0.19 TCGA-D7-A6EY-01 6 44278774 44278774 G - AARS2 Frame_Shift_Del p.Q236Sfs*3 0.21 TCGA-D7-A6EY-01 6 46830807 46830807 C T GPR116 Missense_Mutation p.V673I 0.07 tolerated(0.73) benign(0.001) TCGA-D7-A6EY-01 6 48036205 48036205 G A PTCHD4 Missense_Mutation p.R63C 0.06 tolerated(0.08) probably_damaging(0.988) TCGA-D7-A6EY-01 6 49403193 49403193 C T MUT Missense_Mutation p.M700I 0.22 tolerated_low_confidence(0.96) benign(0.001) TCGA-D7-A6EY-01 6 52992935 52992935 T C GCM1 3'UTR 0.24 TCGA-D7-A6EY-01 6 53519520 53519520 A T KLHL31 Missense_Mutation p.L184Q 0.10 deleterious(0) probably_damaging(1) TCGA-D7-A6EY-01 6 56391227 56391227 G A DST Nonsense_Mutation p.R3398* 0.23 TCGA-D7-A6EY-01 6 56392463 56392463 A C DST Missense_Mutation p.L3294R 0.11 benign(0.202) TCGA-D7-A6EY-01 6 56499277 56499277 C T DST Silent p.A622A 0.23 TCGA-D7-A6EY-01 6 57512699 57512699 T G PRIM2 3'UTR 0.05 TCGA-D7-A6EY-01 6 64421676 64421676 T - PHF3 Frame_Shift_Del p.F1399Lfs*30 0.19 TCGA-D7-A6EY-01 6 66205064 66205064 C T EYS Silent p.L80L 0.16 TCGA-D7-A6EY-01 6 74490205 74490206 - T CD109 Frame_Shift_Ins p.A631Cfs*22 0.14 TCGA-D7-A6EY-01 6 75892895 75892895 C A COL12A1 Missense_Mutation p.A588S 0.11 probably_damaging(0.998) TCGA-D7-A6EY-01 6 80732118 80732118 A T TTK Missense_Mutation p.I396F 0.23 tolerated(0.21) benign(0.058) TCGA-D7-A6EY-01 6 83849979 83849979 C T DOPEY1 Missense_Mutation p.R1758C 0.19 deleterious(0.01) probably_damaging(0.991) TCGA-D7-A6EY-01 6 84269853 84269853 G - SNAP91 Frame_Shift_Del p.F868Lfs*31 0.19 TCGA-D7-A6EY-01 6 87971031 87971031 C T ZNF292 Missense_Mutation p.R2562C 0.19 tolerated(0.19) benign(0.001) TCGA-D7-A6EY-01 6 88210914 88210914 C T SLC35A1 Silent p.C131C 0.15 TCGA-D7-A6EY-01 6 89808271 89808271 C T SRSF12 3'UTR 0.12 TCGA-D7-A6EY-01 6 89888394 89888394 T - GABRR1 3'UTR 0.33 TCGA-D7-A6EY-01 6 94120695 94120695 C A EPHA7 Missense_Mutation p.C119F 0.15 deleterious(0) probably_damaging(0.999) TCGA-D7-A6EY-01 6 99819383 99819383 A G COQ3 Silent p.I270I 0.27 TCGA-D7-A6EY-01 7 100193217 100193217 G A FBXO24 Missense_Mutation p.G403D 0.13 deleterious(0.03) probably_damaging(0.931) TCGA-D7-A6EY-01 7 100320671 100320671 G A EPO Missense_Mutation p.R166H 0.13 tolerated(0.14) benign(0.007) TCGA-D7-A6EY-01 7 100348484 100348484 G A ZAN Missense_Mutation p.V496I 0.40 possibly_damaging(0.596) TCGA-D7-A6EY-01 7 100683507 100683507 C A MUC17 Missense_Mutation p.T2937N 0.21 probably_damaging(0.98) TCGA-D7-A6EY-01 7 100692247 100692247 G A MUC17 Silent p.T4219T 0.25 TCGA-D7-A6EY-01 7 101183294 101183294 C T COL26A1 Missense_Mutation p.P190S 0.09 tolerated(0.11) probably_damaging(0.999) TCGA-D7-A6EY-01 7 102584868 102584868 G A LRRC17 Silent p.T380T 0.18 TCGA-D7-A6EY-01 7 1037311 1037311 G - C7orf50 Frame_Shift_Del p.L179Cfs*136 0.12 TCGA-D7-A6EY-01 7 104741971 104741971 G A KMT2E Missense_Mutation p.A608T 0.14 deleterious(0.05) possibly_damaging(0.483) TCGA-D7-A6EY-01 7 104746985 104746985 A - KMT2E Frame_Shift_Del p.K873Nfs*8 0.14 TCGA-D7-A6EY-01 7 104752567 104752567 C T KMT2E Missense_Mutation p.T1455M 0.15 deleterious_low_confidence(0) possibly_damaging(0.791) TCGA-D7-A6EY-01 7 107258929 107258929 A G BCAP29 Missense_Mutation p.H309R 0.18 deleterious_low_confidence(0) possibly_damaging(0.702) TCGA-D7-A6EY-01 7 107395909 107395909 A - CBLL1 Frame_Shift_Del p.K140Rfs*52 0.13 TCGA-D7-A6EY-01 7 107399402 107399402 C - CBLL1 Frame_Shift_Del p.P420Lfs*20 0.14 TCGA-D7-A6EY-01 7 107599831 107599831 A G LAMB1 Silent p.C851C 0.10 TCGA-D7-A6EY-01 7 107738872 107738872 C T LAMB4 Missense_Mutation p.A446T 0.12 deleterious(0.03) possibly_damaging(0.763) TCGA-D7-A6EY-01 7 108143062 108143062 G A PNPLA8 Nonsense_Mutation p.R411* 0.09 TCGA-D7-A6EY-01 7 123332584 123332585 - G WASL Frame_Shift_Ins p.P389Afs*6 0.21 TCGA-D7-A6EY-01 7 127253851 127253851 C T PAX4 Missense_Mutation p.R166Q 0.25 deleterious(0) probably_damaging(0.999) TCGA-D7-A6EY-01 7 130023259 130023259 G T CPA1 Missense_Mutation p.A171S 0.15 deleterious(0.03) possibly_damaging(0.575) TCGA-D7-A6EY-01 7 136912740 136912740 C T PTN 3'UTR 0.12 TCGA-D7-A6EY-01 7 138552750 138552750 C T KIAA1549 Missense_Mutation p.V1634I 0.21 deleterious(0) probably_damaging(0.999) TCGA-D7-A6EY-01 7 138601985 138601985 G A KIAA1549 Missense_Mutation p.T796M 0.20 deleterious(0) possibly_damaging(0.694) TCGA-D7-A6EY-01 7 138732537 138732537 C T ZC3HAV1 Missense_Mutation p.V838I 0.17 tolerated(1) benign(0.001) TCGA-D7-A6EY-01 7 138957170 138957170 C T UBN2 Nonsense_Mutation p.Q567* 0.18 TCGA-D7-A6EY-01 7 139416654 139416654 C T HIPK2 Silent p.S60S 0.30 TCGA-D7-A6EY-01 7 139657496 139657496 T A TBXAS1 Missense_Mutation p.L298Q 0.09 deleterious(0) possibly_damaging(0.908) TCGA-D7-A6EY-01 7 139724574 139724574 T C PARP12 Missense_Mutation p.N631S 0.22 tolerated(0.82) benign(0) TCGA-D7-A6EY-01 7 141464155 141464156 - T TAS2R3 Frame_Shift_Ins p.L68Ffs*10 0.19 TCGA-D7-A6EY-01 7 143098453 143098453 A C EPHA1 Missense_Mutation p.D132E 0.14 tolerated(0.15) probably_damaging(0.997) TCGA-D7-A6EY-01 7 149489158 149489158 T G SSPO RNA 0.07 TCGA-D7-A6EY-01 7 150488605 150488605 G T TMEM176B 3'UTR 0.19 TCGA-D7-A6EY-01 7 155596351 155596351 C T SHH Missense_Mutation p.G211D 0.21 tolerated(0.53) probably_damaging(0.961) TCGA-D7-A6EY-01 7 157926586 157926586 C T PTPRN2 Missense_Mutation p.V447I 0.20 deleterious(0.04) benign(0.058) TCGA-D7-A6EY-01 7 2054221 2054221 G A MAD1L1 Silent p.A425A 0.17 TCGA-D7-A6EY-01 7 23358755 23358755 A G IGF2BP3 Splice_Site p.X440_splice 0.18 TCGA-D7-A6EY-01 7 2577779 2577780 TT - BRAT1 Frame_Shift_Del p.K797Efs*81 0.16 TCGA-D7-A6EY-01 7 29690683 29690683 C T ZNRF2P2 RNA 0.41 TCGA-D7-A6EY-01 7 30921892 30921892 C T FAM188B Missense_Mutation p.R690C 0.17 tolerated(0.14) benign(0.015) TCGA-D7-A6EY-01 7 4153771 4153771 A G SDK1 Missense_Mutation p.S1230G 0.17 tolerated(0.31) benign(0.005) TCGA-D7-A6EY-01 7 44099697 44099697 C T DBNL Silent p.G375G 0.18 TCGA-D7-A6EY-01 7 44161617 44161617 A G POLD2 Silent p.T12T 0.16 TCGA-D7-A6EY-01 7 44579278 44579278 C - NPC1L1 Frame_Shift_Del p.V240Lfs*27 0.08 TCGA-D7-A6EY-01 7 45614403 45614403 G A ADCY1 Silent p.A87A 0.40 TCGA-D7-A6EY-01 7 48313033 48313033 T C ABCA13 Missense_Mutation p.L1257P 0.14 probably_damaging(0.935) TCGA-D7-A6EY-01 7 48319446 48319446 T C ABCA13 Silent p.C2885C 0.29 TCGA-D7-A6EY-01 7 48684303 48684303 T G ABCA13 Missense_Mutation p.F5012V 0.09 benign(0.05) TCGA-D7-A6EY-01 7 4900105 4900105 T - PAPOLB Frame_Shift_Del p.K445Sfs*28 0.25 TCGA-D7-A6EY-01 7 5352330 5352330 G A TNRC18 Missense_Mutation p.P2731L 0.12 unknown(0) TCGA-D7-A6EY-01 7 5410759 5410759 G A TNRC18 Missense_Mutation p.R1156W 0.19 probably_damaging(0.983) TCGA-D7-A6EY-01 7 55224230 55224230 T C EGFR Silent p.C337C 0.18 TCGA-D7-A6EY-01 7 5528993 5528993 T C FBXL18 Intron 0.20 TCGA-D7-A6EY-01 7 56126090 56126091 - AG CCT6A Frame_Shift_Ins p.L259Nfs*3 0.19 TCGA-D7-A6EY-01 7 5680955 5680955 C T RNF216 Missense_Mutation p.G738S 0.12 tolerated(0.56) benign(0.173) TCGA-D7-A6EY-01 7 6057602 6057602 A G AIMP2 Missense_Mutation p.K167R 0.11 tolerated(0.43) benign(0.007) TCGA-D7-A6EY-01 7 6063241 6063241 A G AIMP2 Silent p.T294T 0.16 TCGA-D7-A6EY-01 7 6196618 6196618 G A USP42 Missense_Mutation p.R1292H 0.25 tolerated(0.28) possibly_damaging(0.809) TCGA-D7-A6EY-01 7 63726730 63726730 A G ZNF679 Missense_Mutation p.Y240C 0.08 deleterious(0.03) benign(0.078) TCGA-D7-A6EY-01 7 64452896 64452896 G A ERV3-1 Missense_Mutation p.T170M 0.11 tolerated(0.06) possibly_damaging(0.817) TCGA-D7-A6EY-01 7 6470224 6470224 A T DAGLB Missense_Mutation p.D272E 0.29 tolerated(0.52) probably_damaging(0.993) TCGA-D7-A6EY-01 7 70231245 70231245 G A AUTS2 Silent p.T538T 0.10 TCGA-D7-A6EY-01 7 72985266 72985266 C T TBL2 Silent p.L305L 0.17 TCGA-D7-A6EY-01 7 73012008 73012008 G A MLXIPL Silent p.S369S 0.13 TCGA-D7-A6EY-01 7 73151664 73151664 C T ABHD11 Missense_Mutation p.V174I 0.20 tolerated(0.42) benign(0.014) TCGA-D7-A6EY-01 7 73634118 73634118 G A LAT2 Splice_Site p.X60_splice 0.11 TCGA-D7-A6EY-01 7 74539001 74539001 G A GTF2IRD2B Silent p.S141S 0.13 TCGA-D7-A6EY-01 7 76111866 76111866 T G DTX2 Missense_Mutation p.S104A 0.09 deleterious(0) benign(0.075) TCGA-D7-A6EY-01 7 77221548 77221548 C T PTPN12 Missense_Mutation p.T156M 0.06 deleterious(0.02) possibly_damaging(0.549) TCGA-D7-A6EY-01 7 77256457 77256457 C T PTPN12 Silent p.V487V 0.13 TCGA-D7-A6EY-01 7 77265153 77265153 A - PTPN12 Frame_Shift_Del p.K712Sfs*5 0.23 TCGA-D7-A6EY-01 7 8095099 8095099 A G GLCCI1 Missense_Mutation p.K245E 0.11 deleterious(0) possibly_damaging(0.487) TCGA-D7-A6EY-01 7 8167646 8167646 G T ICA1 Missense_Mutation p.A396D 0.20 tolerated(0.69) benign(0.33) TCGA-D7-A6EY-01 7 87037390 87037390 A C ABCB4 Missense_Mutation p.L1081R 0.06 deleterious(0) probably_damaging(1) TCGA-D7-A6EY-01 7 87329803 87329803 G A RUNDC3B Missense_Mutation p.R119Q 0.19 deleterious(0.05) possibly_damaging(0.464) TCGA-D7-A6EY-01 7 87399959 87399959 G A RUNDC3B Missense_Mutation p.S248N 0.24 tolerated(0.38) benign(0.045) TCGA-D7-A6EY-01 7 87797530 87797530 C T ADAM22 Missense_Mutation p.A757V 0.24 tolerated(0.06) benign(0.124) TCGA-D7-A6EY-01 7 92730677 92730677 A C SAMD9 Missense_Mutation p.I1578M 0.04 tolerated(0.33) benign(0.117) TCGA-D7-A6EY-01 7 97846693 97846693 G - TECPR1 3'UTR 0.25 TCGA-D7-A6EY-01 7 98545941 98545941 C T TRRAP Missense_Mutation p.T1542M 0.17 probably_damaging(0.943) TCGA-D7-A6EY-01 7 98985793 98985793 T G ARPC1B Missense_Mutation p.C101G 0.08 tolerated(0.09) possibly_damaging(0.646) TCGA-D7-A6EY-01 7 99691937 99691937 C T MCM7 Silent p.K569K 0.20 TCGA-D7-A6EY-01 7 99706095 99706095 T A TAF6 Missense_Mutation p.E488D 0.09 tolerated(0.86) benign(0.001) TCGA-D7-A6EY-01 7 99709441 99709441 G A TAF6 Silent p.N307N 0.23 TCGA-D7-A6EY-01 8 100847855 100847855 G A VPS13B Silent p.P3302P 0.11 TCGA-D7-A6EY-01 8 100847958 100847958 G A VPS13B Missense_Mutation p.G3337R 0.16 deleterious(0.01) probably_damaging(0.953) TCGA-D7-A6EY-01 8 104442891 104442891 A G DCAF13 Missense_Mutation p.M378V 0.20 tolerated(0.21) benign(0.018) TCGA-D7-A6EY-01 8 10470324 10470324 C T RP1L1 Silent p.L428L 0.16 TCGA-D7-A6EY-01 8 10480514 10480514 G A RP1L1 Silent p.D66D 0.14 TCGA-D7-A6EY-01 8 105160971 105160971 T G RIMS2 Intron 0.11 TCGA-D7-A6EY-01 8 110100324 110100324 G A TRHR Missense_Mutation p.D195N 0.06 deleterious(0) probably_damaging(0.999) TCGA-D7-A6EY-01 8 110566971 110566971 A T EBAG9 Missense_Mutation p.E59V 0.10 deleterious(0.03) benign(0.293) TCGA-D7-A6EY-01 8 11058771 11058771 G A XKR6 Silent p.S26S 0.26 TCGA-D7-A6EY-01 8 110984820 110984820 C T KCNV1 Missense_Mutation p.V220M 0.10 deleterious(0) possibly_damaging(0.869) TCGA-D7-A6EY-01 8 113504720 113504720 T C CSMD3 Missense_Mutation p.H1759R 0.05 tolerated(0.59) benign(0.313) TCGA-D7-A6EY-01 8 117866580 117866580 C T RAD21 Silent p.P355P 0.08 TCGA-D7-A6EY-01 8 120594822 120594822 C T ENPP2 Missense_Mutation p.A574T 0.13 deleterious(0.02) possibly_damaging(0.682) TCGA-D7-A6EY-01 8 125029888 125029888 A - FER1L6 Frame_Shift_Del p.K650Sfs*5 0.11 TCGA-D7-A6EY-01 8 125499569 125499569 T C RNF139 Missense_Mutation p.I560T 0.14 deleterious(0) possibly_damaging(0.543) TCGA-D7-A6EY-01 8 125500847 125500847 A - TATDN1 Frame_Shift_Del p.P295Lfs*19 0.17 TCGA-D7-A6EY-01 8 126069833 126069833 A C KIAA0196 Missense_Mutation p.Y614D 0.11 deleterious(0) probably_damaging(0.981) TCGA-D7-A6EY-01 8 126448817 126448817 A C TRIB1 3'UTR 0.18 TCGA-D7-A6EY-01 8 131797710 131797710 T C ADCY8 Silent p.E1024E 0.11 TCGA-D7-A6EY-01 8 132002664 132002664 C T ADCY8 Missense_Mutation p.R362H 0.18 deleterious(0) possibly_damaging(0.7) TCGA-D7-A6EY-01 8 133961067 133961067 T G TG Missense_Mutation p.C1760W 0.19 deleterious(0) probably_damaging(0.997) TCGA-D7-A6EY-01 8 134062186 134062186 C G SLA Missense_Mutation p.S110T 0.20 tolerated(0.37) possibly_damaging(0.447) TCGA-D7-A6EY-01 8 134232859 134232859 C T WISP1 Missense_Mutation p.R129C 0.09 tolerated(0.13) probably_damaging(0.953) TCGA-D7-A6EY-01 8 139323158 139323158 T C FAM135B Missense_Mutation p.Y28C 0.24 deleterious(0) probably_damaging(1) TCGA-D7-A6EY-01 8 141449257 141449257 G A TRAPPC9 Silent p.H306H 0.10 TCGA-D7-A6EY-01 8 144103031 144103031 C T LY6E Missense_Mutation p.A74V 0.14 tolerated(0.92) benign(0.003) TCGA-D7-A6EY-01 8 144239752 144239752 G A LY6H Missense_Mutation p.A134V 0.12 tolerated(0.45) benign(0.02) TCGA-D7-A6EY-01 8 144241620 144241620 G - LY6H 5'UTR 0.29 TCGA-D7-A6EY-01 8 144650731 144650731 G A MROH6 Silent p.D545D 0.23 TCGA-D7-A6EY-01 8 144895989 144895989 T C SCRIB Missense_Mutation p.R119G 0.17 possibly_damaging(0.718) TCGA-D7-A6EY-01 8 145009380 145009380 A G PLEC Missense_Mutation p.L372P 0.11 unknown(0) TCGA-D7-A6EY-01 8 145111098 145111098 C T OPLAH Missense_Mutation p.G683D 0.23 tolerated(0.61) benign(0.002) TCGA-D7-A6EY-01 8 145111153 145111153 A G OPLAH Missense_Mutation p.C665R 0.08 deleterious(0.01) possibly_damaging(0.707) TCGA-D7-A6EY-01 8 145626450 145626450 A G CPSF1 Missense_Mutation p.V136A 0.13 tolerated(0.48) benign(0.105) TCGA-D7-A6EY-01 8 145661672 145661672 T C TONSL Missense_Mutation p.H715R 0.13 tolerated(0.57) benign(0) TCGA-D7-A6EY-01 8 145698237 145698237 G C KIFC2 Missense_Mutation p.G641R 0.21 deleterious(0) possibly_damaging(0.762) TCGA-D7-A6EY-01 8 145724400 145724400 G A PPP1R16A Silent p.A144A 0.23 TCGA-D7-A6EY-01 8 145730439 145730439 T C GPT Silent p.I140I 0.13 TCGA-D7-A6EY-01 8 146278758 146278758 A G C8orf33 Missense_Mutation p.H160R 0.15 tolerated(1) benign(0.007) TCGA-D7-A6EY-01 8 16942810 16942810 A - MICU3 Frame_Shift_Del p.E256Sfs*59 0.12 TCGA-D7-A6EY-01 8 19263296 19263296 T - CSGALNACT1 Frame_Shift_Del p.T532Hfs*43 0.14 TCGA-D7-A6EY-01 8 20005579 20005579 A G SLC18A1 Silent p.V383V 0.17 TCGA-D7-A6EY-01 8 2063871 2063871 G A MYOM2 Silent p.Q1100Q 0.14 TCGA-D7-A6EY-01 8 21955612 21955612 G A FAM160B2 Missense_Mutation p.G187R 0.24 tolerated(0.61) benign(0.003) TCGA-D7-A6EY-01 8 21965312 21965312 A G NUDT18 Silent p.H157H 0.06 TCGA-D7-A6EY-01 8 22175700 22175700 A G PIWIL2 Missense_Mutation p.Y772C 0.11 deleterious(0) probably_damaging(0.969) TCGA-D7-A6EY-01 8 22475247 22475247 G A CCAR2 Missense_Mutation p.A677T 0.15 tolerated(0.16) probably_damaging(0.998) TCGA-D7-A6EY-01 8 22476357 22476357 C - CCAR2 Frame_Shift_Del p.P785Lfs*25 0.11 TCGA-D7-A6EY-01 8 22864881 22864881 G A RHOBTB2 Missense_Mutation p.G397R 0.11 tolerated(0.43) benign(0.071) TCGA-D7-A6EY-01 8 26722436 26722436 C T ADRA1A Silent p.P17P 0.12 TCGA-D7-A6EY-01 8 27311752 27311752 G A PTK2B Missense_Mutation p.E893K 0.16 tolerated(0.06) benign(0.008) TCGA-D7-A6EY-01 8 27528559 27528559 C T SCARA3 Silent p.A504A 0.10 TCGA-D7-A6EY-01 8 27737174 27737174 G A SCARA5 Silent p.G421G 0.18 TCGA-D7-A6EY-01 8 2820918 2820918 C A CSMD1 Splice_Site p.X3094_splice 0.13 TCGA-D7-A6EY-01 8 28385159 28385159 T - FZD3 Frame_Shift_Del p.F296Lfs*10 0.17 TCGA-D7-A6EY-01 8 30623790 30623790 C T UBXN8 RNA 0.07 TCGA-D7-A6EY-01 8 30701411 30701412 - T TEX15 Frame_Shift_Ins p.R1708Kfs*6 0.11 TCGA-D7-A6EY-01 8 30705912 30705912 T - TEX15 Frame_Shift_Del p.T208Qfs*19 0.14 TCGA-D7-A6EY-01 8 3165276 3165276 C T CSMD1 Silent p.P1297P 0.14 TCGA-D7-A6EY-01 8 32453511 32453511 A - NRG1 Frame_Shift_Del p.K91Sfs*24 0.09 TCGA-D7-A6EY-01 8 33356786 33356786 C T TTI2 Missense_Mutation p.A478T 0.16 tolerated(0.34) benign(0.063) TCGA-D7-A6EY-01 8 37730524 37730525 GA - RAB11FIP1 Frame_Shift_Del p.S599Ifs*14 0.19 TCGA-D7-A6EY-01 8 38105213 38105213 T A DDHD2 Intron 0.15 TCGA-D7-A6EY-01 8 48746799 48746799 T - PRKDC Frame_Shift_Del p.R2703Gfs*13 0.18 TCGA-D7-A6EY-01 8 48855837 48855837 A G PRKDC Missense_Mutation p.W300R 0.11 possibly_damaging(0.877) TCGA-D7-A6EY-01 8 53853315 53853315 C T NPBWR1 Missense_Mutation p.P283L 0.14 tolerated(0.09) probably_damaging(0.988) TCGA-D7-A6EY-01 8 55370866 55370866 C T SOX17 Silent p.A56A 0.15 TCGA-D7-A6EY-01 8 59410908 59410908 A - CYP7A1 Frame_Shift_Del p.F67Lfs*5 0.08 TCGA-D7-A6EY-01 8 61713001 61713001 T C CHD7 Missense_Mutation p.F765L 0.25 probably_damaging(0.914) TCGA-D7-A6EY-01 8 6293605 6293605 A C MCPH1 Missense_Mutation p.T120P 0.14 deleterious(0) probably_damaging(0.991) TCGA-D7-A6EY-01 8 65291788 65291788 A C MIR124-2 RNA 0.25 TCGA-D7-A6EY-01 8 67417695 67417695 G A C8orf46 Missense_Mutation p.R71H 0.23 deleterious(0.03) possibly_damaging(0.681) TCGA-D7-A6EY-01 8 69381025 69381025 C A C8orf34 Missense_Mutation p.L236M 0.18 deleterious(0.01) probably_damaging(1) TCGA-D7-A6EY-01 8 70551091 70551091 T C SULF1 Missense_Mutation p.V850A 0.13 tolerated_low_confidence(0.64) benign(0) TCGA-D7-A6EY-01 8 73848276 73848276 A T KCNB2 Missense_Mutation p.D229V 0.15 deleterious(0) possibly_damaging(0.642) TCGA-D7-A6EY-01 8 73951397 73951397 A G TERF1 Missense_Mutation p.I362M 0.27 tolerated(0.28) benign(0.142) TCGA-D7-A6EY-01 8 74903748 74903748 T C LY96 Missense_Mutation p.V24A 0.18 deleterious(0.01) benign(0.12) TCGA-D7-A6EY-01 8 77767090 77767090 A - ZFHX4 Frame_Shift_Del p.R2647Gfs*44 0.13 TCGA-D7-A6EY-01 8 87917380 87917380 A - CNBD1 Frame_Shift_Del p.K78Nfs*34 0.13 TCGA-D7-A6EY-01 8 90965666 90965666 T - NBN Frame_Shift_Del p.R551Gfs*8 0.09 TCGA-D7-A6EY-01 8 95690492 95690492 C T ESRP1 Silent p.A571A 0.06 TCGA-D7-A6EY-01 8 98289982 98289982 C T TSPYL5 Missense_Mutation p.D31N 0.19 tolerated(0.4) unknown(0) TCGA-D7-A6EY-01 8 99962935 99962935 A T OSR2 Silent p.G236G 0.14 TCGA-D7-A6EY-01 9 100364702 100364702 C - TSTD2 3'UTR 0.13 TCGA-D7-A6EY-01 9 100449520 100449520 A C XPA Missense_Mutation p.L138R 0.15 deleterious(0) probably_damaging(0.998) TCGA-D7-A6EY-01 9 105767708 105767708 G T CYLC2 Missense_Mutation p.K265N 0.10 deleterious(0.01) unknown(0) TCGA-D7-A6EY-01 9 106885501 106885501 A - SMC2 Frame_Shift_Del p.T751Pfs*9 0.11 TCGA-D7-A6EY-01 9 106889742 106889742 C A SMC2 Missense_Mutation p.A924D 0.18 deleterious(0.02) benign(0.033) TCGA-D7-A6EY-01 9 110249778 110249778 C T KLF4 Silent p.R299R 0.12 TCGA-D7-A6EY-01 9 111625720 111625720 G A ACTL7A Missense_Mutation p.R373H 0.14 deleterious(0.01) benign(0.235) TCGA-D7-A6EY-01 9 111698607 111698607 G A FAM206A Missense_Mutation p.A51T 0.14 deleterious(0.02) possibly_damaging(0.88) TCGA-D7-A6EY-01 9 112963473 112963473 A G C9orf152 Silent p.L159L 0.09 TCGA-D7-A6EY-01 9 116154591 116154591 T G ALAD Intron 0.11 TCGA-D7-A6EY-01 9 116154601 116154601 G A ALAD Intron 0.24 TCGA-D7-A6EY-01 9 116770827 116770827 C T ZNF618 Silent p.I217I 0.18 TCGA-D7-A6EY-01 9 117051237 117051237 A G COL27A1 Missense_Mutation p.Q1381R 0.10 unknown(0) TCGA-D7-A6EY-01 9 117120302 117120302 C T AKNA Missense_Mutation p.A880T 0.16 tolerated(0.46) benign(0.011) TCGA-D7-A6EY-01 9 117143524 117143524 C A AKNA Missense_Mutation p.K30N 0.18 tolerated(0.08) benign(0.115) TCGA-D7-A6EY-01 9 123216122 123216122 A C CDK5RAP2 Missense_Mutation p.L802R 0.07 deleterious(0.03) probably_damaging(0.979) TCGA-D7-A6EY-01 9 123586858 123586858 T C PSMD5 Missense_Mutation p.Q307R 0.13 tolerated(0.59) probably_damaging(0.968) TCGA-D7-A6EY-01 9 124064376 124064376 G A GSN Missense_Mutation p.A94T 0.21 deleterious(0.04) benign(0.415) TCGA-D7-A6EY-01 9 124535070 124535070 C T DAB2IP Missense_Mutation p.R727C 0.13 deleterious(0) probably_damaging(0.931) TCGA-D7-A6EY-01 9 124545885 124545885 A G DAB2IP 3'UTR 0.15 TCGA-D7-A6EY-01 9 125486897 125512755 9:125486897-125512755 - OR1L4 large deletion 0.08 TCGA-D7-A6EY-01 9 125512755 125512755 C - OR1L6 Frame_Shift_Del p.F212Sfs*38 0.12 TCGA-D7-A6EY-01 9 127572512 127572512 C T OLFML2A Nonsense_Mutation p.Q594* 0.10 TCGA-D7-A6EY-01 9 127617966 127617966 T C WDR38 Missense_Mutation p.S82P 0.06 deleterious(0.01) probably_damaging(0.984) TCGA-D7-A6EY-01 9 127643510 127643510 T C GOLGA1 Silent p.S721S 0.20 TCGA-D7-A6EY-01 9 129642636 129642636 C T ZBTB34 Nonsense_Mutation p.R316* 0.12 TCGA-D7-A6EY-01 9 130224623 130224623 C T LRSAM1 Nonsense_Mutation p.Q167* 0.18 TCGA-D7-A6EY-01 9 130469428 130469428 T C C9orf117 Missense_Mutation p.F40L 0.12 deleterious(0.03) probably_damaging(0.994) TCGA-D7-A6EY-01 9 130829334 130829334 T C NAIF1 Missense_Mutation p.E16G 0.11 deleterious(0) probably_damaging(0.995) TCGA-D7-A6EY-01 9 130860977 130860977 A T SLC25A25 Intron 0.07 TCGA-D7-A6EY-01 9 130863446 130863446 A G SLC25A25 Silent p.Q111Q 0.07 TCGA-D7-A6EY-01 9 131396106 131396106 A G WDR34 Missense_Mutation p.W510R 0.23 deleterious(0) probably_damaging(0.998) TCGA-D7-A6EY-01 9 131591432 131591432 A G C9orf114 Silent p.G13G 0.13 TCGA-D7-A6EY-01 9 131870225 131870225 C T CRAT Silent p.A53A 0.17 TCGA-D7-A6EY-01 9 133355812 133355812 C T ASS1 Missense_Mutation p.R272C 0.14 deleterious(0.02) possibly_damaging(0.473) TCGA-D7-A6EY-01 9 133759478 133759478 A G ABL1 Missense_Mutation p.S620G 0.13 deleterious_low_confidence(0.02) probably_damaging(0.977) TCGA-D7-A6EY-01 9 134346278 134346278 C T PRRC2B Missense_Mutation p.P672L 0.11 deleterious(0) probably_damaging(0.999) TCGA-D7-A6EY-01 9 135919265 135919265 G A GTF3C5 Missense_Mutation p.R175Q 0.20 deleterious(0) probably_damaging(0.994) TCGA-D7-A6EY-01 9 136918532 136918532 G T BRD3 Missense_Mutation p.P23H 0.20 deleterious(0) possibly_damaging(0.871) TCGA-D7-A6EY-01 9 138379043 138379043 G - PPP1R26 Frame_Shift_Del p.V898Sfs*56 0.21 TCGA-D7-A6EY-01 9 138742275 138742275 C T CAMSAP1 Missense_Mutation p.D281N 0.13 deleterious(0) probably_damaging(0.948) TCGA-D7-A6EY-01 9 138836996 138836996 C - UBAC1 Frame_Shift_Del p.A252Pfs*23 0.15 TCGA-D7-A6EY-01 9 139333133 139333133 C T INPP5E Missense_Mutation p.D247N 0.19 tolerated(0.49) benign(0.008) TCGA-D7-A6EY-01 9 139345720 139345720 C A SEC16A Missense_Mutation p.K2100N 0.14 tolerated(0.07) possibly_damaging(0.853) TCGA-D7-A6EY-01 9 139617940 139617940 G A FAM69B Missense_Mutation p.S337N 0.24 tolerated(0.95) benign(0.028) TCGA-D7-A6EY-01 9 139902342 139902342 G A ABCA2 3'UTR 0.15 TCGA-D7-A6EY-01 9 139905931 139905931 A C ABCA2 Missense_Mutation p.I1909M 0.12 deleterious(0.01) probably_damaging(1) TCGA-D7-A6EY-01 9 140006327 140006327 C - DPP7 Frame_Shift_Del p.G402Vfs*28 0.31 TCGA-D7-A6EY-01 9 140138141 140138141 T A FAM166A 3'UTR 0.09 TCGA-D7-A6EY-01 9 140139126 140139126 T A FAM166A Missense_Mutation p.M239L 0.21 tolerated(0.05) benign(0.001) TCGA-D7-A6EY-01 9 140139562 140139562 T A FAM166A Missense_Mutation p.I211F 0.17 deleterious(0) possibly_damaging(0.562) TCGA-D7-A6EY-01 9 140174339 140174339 T C TOR4A Missense_Mutation p.F400L 0.33 deleterious(0) benign(0.066) TCGA-D7-A6EY-01 9 140289760 140289760 C T EXD3 Missense_Mutation p.R17H 0.10 tolerated_low_confidence(0.15) benign(0.072) TCGA-D7-A6EY-01 9 140732909 140732909 G A EHMT1 3'Flank 0.15 TCGA-D7-A6EY-01 9 18777151 18777151 G A ADAMTSL1 Missense_Mutation p.R975K 0.14 tolerated(0.78) benign(0.001) TCGA-D7-A6EY-01 9 19063047 19063047 T - HAUS6 Frame_Shift_Del p.S530Vfs*12 0.19 TCGA-D7-A6EY-01 9 19082943 19082943 A G HAUS6 Silent p.A266A 0.16 TCGA-D7-A6EY-01 9 2123796 2123796 G A SMARCA2 Silent p.L1280L 0.17 TCGA-D7-A6EY-01 9 21816756 21816756 G A MTAP Missense_Mutation p.C55Y 0.18 deleterious(0.01) probably_damaging(1) TCGA-D7-A6EY-01 9 2182188 2182188 G A SMARCA2 Silent p.K1469K 0.11 TCGA-D7-A6EY-01 9 33073764 33073764 A T SMU1 Missense_Mutation p.L23I 0.17 deleterious(0) probably_damaging(0.995) TCGA-D7-A6EY-01 9 33248464 33248464 T G SPINK4 Missense_Mutation p.C86G 0.10 deleterious(0) probably_damaging(1) TCGA-D7-A6EY-01 9 33472011 33472011 A G NOL6 Silent p.P123P 0.05 TCGA-D7-A6EY-01 9 34557547 34557547 A C CNTFR Missense_Mutation p.I194S 0.14 deleterious(0.02) benign(0.031) TCGA-D7-A6EY-01 9 34557549 34557549 A G CNTFR Silent p.A193A 0.12 TCGA-D7-A6EY-01 9 34611083 34611083 C T RPP25L Missense_Mutation p.A71T 0.21 deleterious(0.01) possibly_damaging(0.906) TCGA-D7-A6EY-01 9 34648885 34648885 C T GALT Missense_Mutation p.R272C 0.13 deleterious(0) probably_damaging(0.989) TCGA-D7-A6EY-01 9 35077352 35077352 A G FANCG Silent p.S185S 0.18 TCGA-D7-A6EY-01 9 35609431 35609432 - C TESK1 Frame_Shift_Ins p.Q527Tfs*14 0.12 TCGA-D7-A6EY-01 9 35662946 35662946 A T ARHGEF39 Missense_Mutation p.S224T 0.09 tolerated(0.11) benign(0.001) TCGA-D7-A6EY-01 9 35704044 35704044 C T TLN1 Missense_Mutation p.A2059T 0.16 tolerated(0.24) probably_damaging(0.987) TCGA-D7-A6EY-01 9 35713198 35713198 T A TLN1 Missense_Mutation p.Y1116F 0.12 deleterious(0.01) probably_damaging(0.952) TCGA-D7-A6EY-01 9 35736486 35736486 G A CREB3 Silent p.Q293Q 0.19 TCGA-D7-A6EY-01 9 35809559 35809559 A - NPR2 3'UTR 0.11 TCGA-D7-A6EY-01 9 36369780 36369780 C T RNF38 Missense_Mutation p.R169H 0.06 deleterious(0) possibly_damaging(0.861) TCGA-D7-A6EY-01 9 37349450 37349450 G A ZCCHC7 Splice_Site p.X361_splice 0.15 TCGA-D7-A6EY-01 9 43818077 43818077 C T CNTNAP3B Missense_Mutation p.R322W 0.23 deleterious(0.04) benign(0.009) TCGA-D7-A6EY-01 9 43822687 43822687 G A CNTNAP3B Missense_Mutation p.R414H 0.23 tolerated(0.46) benign(0.006) TCGA-D7-A6EY-01 9 5457204 5457204 G A CD274 Missense_Mutation p.E60K 0.07 tolerated(0.84) benign(0.003) TCGA-D7-A6EY-01 9 6595052 6595052 G T GLDC Missense_Mutation p.A408D 0.14 deleterious(0) probably_damaging(0.993) TCGA-D7-A6EY-01 9 7103861 7103861 C - KDM4C Frame_Shift_Del p.N869Tfs*2 0.14 TCGA-D7-A6EY-01 9 77614678 77614678 A - C9orf41 Frame_Shift_Del p.F233Lfs*59 0.19 TCGA-D7-A6EY-01 9 79117617 79117617 G A GCNT1 Missense_Mutation p.R107H 0.09 deleterious(0.01) benign(0.058) TCGA-D7-A6EY-01 9 79324748 79324749 - T PRUNE2 Frame_Shift_Ins p.N814Kfs*16 0.21 TCGA-D7-A6EY-01 9 86617025 86617025 A - RMI1 Frame_Shift_Del p.N377Mfs*6 0.16 TCGA-D7-A6EY-01 9 87636427 87636427 C T NTRK2 3'UTR 0.31 TCGA-D7-A6EY-01 9 90321930 90321930 G A DAPK1 Missense_Mutation p.R1315H 0.17 tolerated(0.13) probably_damaging(0.973) TCGA-D7-A6EY-01 9 96021431 96021431 G A WNK2 Silent p.A867A 0.29 TCGA-D7-A6EY-01 9 96061507 96061507 G A WNK2 Missense_Mutation p.G2064S 0.14 unknown(0) TCGA-D7-A6EY-01 9 96097786 96097786 G A C9orf129 Silent p.L79L 0.20 TCGA-D7-A6EY-01 9 96416722 96416722 C A PHF2 Missense_Mutation p.P273T 0.22 deleterious(0) unknown(0) TCGA-D7-A6EY-01 9 98209351 98209351 C - PTCH1 Frame_Shift_Del p.G1396Dfs*56 0.18 TCGA-D7-A6EY-01 9 98240410 98240410 G A PTCH1 Missense_Mutation p.T425M 0.07 deleterious(0) possibly_damaging(0.874) TCGA-D7-A6EY-01 9 99800201 99800201 G A CTSV Missense_Mutation p.A42V 0.11 tolerated(0.29) benign(0.002) TCGA-D7-A6EY-01 X 100496847 100496847 T C DRP2 Silent p.A250A 0.44 TCGA-D7-A6EY-01 X 100653778 100653778 C A GLA Missense_Mutation p.D266Y 0.09 deleterious(0) probably_damaging(1) TCGA-D7-A6EY-01 X 101138598 101138598 T - ZMAT1 Frame_Shift_Del p.S601Afs*48 0.22 TCGA-D7-A6EY-01 X 101141679 101141679 C A ZMAT1 Missense_Mutation p.C177F 0.14 deleterious(0) probably_damaging(1) TCGA-D7-A6EY-01 X 102192430 102192430 C T RAB40AL Missense_Mutation p.R62W 0.09 deleterious(0.01) probably_damaging(1) TCGA-D7-A6EY-01 X 103359043 103359044 - A ZCCHC18 Frame_Shift_Ins p.L83Tfs*9 0.15 TCGA-D7-A6EY-01 X 107084614 107084614 A C MID2 Missense_Mutation p.K240T 0.22 deleterious(0.02) possibly_damaging(0.663) TCGA-D7-A6EY-01 X 107406265 107406265 G C COL4A6 Missense_Mutation p.S1359C 0.08 possibly_damaging(0.77) TCGA-D7-A6EY-01 X 107812034 107812034 G A COL4A5 Missense_Mutation p.G123R 0.08 unknown(0) TCGA-D7-A6EY-01 X 118763372 118763372 T A SEPT6 Nonsense_Mutation p.K397* 0.10 TCGA-D7-A6EY-01 X 125686355 125686355 C A DCAF12L1 Silent p.A79A 0.23 TCGA-D7-A6EY-01 X 129189982 129189982 C T BCORL1 Silent p.A1669A 0.15 TCGA-D7-A6EY-01 X 129201458 129201458 G - ELF4 Frame_Shift_Del p.V411Wfs*7 0.16 TCGA-D7-A6EY-01 X 131212883 131212883 T C FRMD7 Missense_Mutation p.T388A 0.15 tolerated(0.22) probably_damaging(0.995) TCGA-D7-A6EY-01 X 134978401 134978401 G A SAGE1 Splice_Site p.X1_splice 0.13 TCGA-D7-A6EY-01 X 135290723 135290723 A C FHL1 Missense_Mutation p.E204A 0.12 deleterious(0.01) possibly_damaging(0.771) TCGA-D7-A6EY-01 X 13762570 13762570 A G OFD1 Missense_Mutation p.Y150C 0.13 deleterious(0.05) probably_damaging(0.975) TCGA-D7-A6EY-01 X 138687910 138687911 CA - MCF2 Frame_Shift_Del p.R584Sfs*14 0.15 TCGA-D7-A6EY-01 X 139586828 139586828 C - SOX3 Frame_Shift_Del p.G133Vfs*7 0.11 TCGA-D7-A6EY-01 X 140991692 140991692 T C MAGEC1 5'UTR 0.14 TCGA-D7-A6EY-01 X 151896598 151896598 G A MAGEA12 3'Flank 0.11 TCGA-D7-A6EY-01 X 151935799 151935799 T C MAGEA3 Missense_Mutation p.K123R 0.10 deleterious(0.02) probably_damaging(0.975) TCGA-D7-A6EY-01 X 152158827 152158827 G A PNMA5 Missense_Mutation p.A439V 0.11 deleterious(0.01) possibly_damaging(0.835) TCGA-D7-A6EY-01 X 152861628 152861628 G A FAM58A Missense_Mutation p.R42W 0.10 deleterious(0.04) benign(0.033) TCGA-D7-A6EY-01 X 153174920 153174920 G T ARHGAP4 Silent p.L868L 0.21 TCGA-D7-A6EY-01 X 153217972 153217972 G A HCFC1 Silent p.A1645A 0.10 TCGA-D7-A6EY-01 X 153217996 153217996 C T HCFC1 Silent p.A1637A 0.12 TCGA-D7-A6EY-01 X 153220076 153220076 G A HCFC1 Silent p.C1258C 0.22 TCGA-D7-A6EY-01 X 153585944 153585944 G A FLNA Silent p.D1601D 0.07 TCGA-D7-A6EY-01 X 15580094 15580094 G A ACE2 Silent p.I784I 0.16 TCGA-D7-A6EY-01 X 205452 205452 C T PLCXD1 Silent p.H60H 0.18 TCGA-D7-A6EY-01 X 21896681 21896681 A - MBTPS2 Frame_Shift_Del p.S380Afs*8 0.11 TCGA-D7-A6EY-01 X 224128 224128 G A GTPBP6 Silent p.H213H 0.22 TCGA-D7-A6EY-01 X 2748186 2748186 G A GYG2 5'UTR 0.12 TCGA-D7-A6EY-01 X 30260340 30260340 C T MAGEB4 Missense_Mutation p.P30S 0.27 deleterious(0.01) benign(0.003) TCGA-D7-A6EY-01 X 3240252 3240252 G A MXRA5 Silent p.R1158R 0.17 TCGA-D7-A6EY-01 X 40552103 40552103 A G MED14 Missense_Mutation p.Y568H 0.19 deleterious(0) possibly_damaging(0.776) TCGA-D7-A6EY-01 X 46918268 46918268 G A JADE3 Missense_Mutation p.R754Q 0.17 tolerated_low_confidence(0.11) benign(0.007) TCGA-D7-A6EY-01 X 47509954 47509954 A G ELK1 5'Flank 0.19 TCGA-D7-A6EY-01 X 49021219 49021219 T A MAGIX Missense_Mutation p.C100S 0.22 tolerated(0.53) benign(0) TCGA-D7-A6EY-01 X 49050777 49050777 C - SYP Frame_Shift_Del p.G90Afs*7 0.15 TCGA-D7-A6EY-01 X 49093689 49093689 G A CCDC22 Missense_Mutation p.A63T 0.09 deleterious(0) probably_damaging(0.933) TCGA-D7-A6EY-01 X 51487096 51487096 A T GSPT2 Missense_Mutation p.N125I 0.17 tolerated(0.06) benign(0.001) TCGA-D7-A6EY-01 X 53106765 53106765 A G GPR173 Missense_Mutation p.Y321C 0.07 deleterious(0) possibly_damaging(0.886) TCGA-D7-A6EY-01 X 53117110 53117110 A - TSPYL2 Frame_Shift_Del p.T692Pfs*27 0.09 TCGA-D7-A6EY-01 X 53674486 53674486 T C HUWE1 Missense_Mutation p.D59G 0.16 probably_damaging(0.999) TCGA-D7-A6EY-01 X 54496632 54496632 G - FGD1 Frame_Shift_Del p.S307Afs*53 0.32 TCGA-D7-A6EY-01 X 55513608 55513608 G A USP51 Missense_Mutation p.P589S 0.21 deleterious(0) probably_damaging(0.992) TCGA-D7-A6EY-01 X 56592133 56592133 C T UBQLN2 Silent p.G609G 0.13 TCGA-D7-A6EY-01 X 63409752 63409752 A G AMER1 3'UTR 0.24 TCGA-D7-A6EY-01 X 65420424 65420424 T C HEPH Missense_Mutation p.M690T 0.19 deleterious(0.01) benign(0.062) TCGA-D7-A6EY-01 X 67413750 67413750 T C OPHN1 Missense_Mutation p.N395D 0.14 tolerated(0.14) probably_damaging(0.975) TCGA-D7-A6EY-01 X 70472510 70472511 AG - ZMYM3 Frame_Shift_Del p.L199Gfs*15 0.16 TCGA-D7-A6EY-01 X 70782825 70782825 T - OGT Frame_Shift_Del p.F704Lfs*12 0.09 TCGA-D7-A6EY-01 X 70832836 70832836 T G ACRC 3'UTR 0.21 TCGA-D7-A6EY-01 X 73812324 73812324 A C RLIM Missense_Mutation p.S276A 0.07 tolerated(0.31) unknown(0) TCGA-D7-A6EY-01 X 73963911 73963911 G C KIAA2022 Missense_Mutation p.P161A 0.10 tolerated(0.05) possibly_damaging(0.67) TCGA-D7-A6EY-01 X 74288920 74288920 A G ABCB7 Silent p.G528G 0.10 TCGA-D7-A6EY-01 X 75649437 75649437 G A MAGEE1 Missense_Mutation p.A372T 0.15 tolerated_low_confidence(0.15) benign(0.114) TCGA-D7-A6EY-01 X 84363314 84363314 G T SATL1 Missense_Mutation p.Q221K 0.22 tolerated(0.39) benign(0.011) TCGA-D7-A6EY-01 X 99663156 99663156 C T PCDH19 Missense_Mutation p.R147H 0.11 deleterious(0) probably_damaging(0.992) TCGA-D7-A6EZ-01 10 101147910 101147910 C A CNNM1 Nonsense_Mutation p.C842* 0.52 TCGA-D7-A6EZ-01 10 103869414 103869414 C T LDB1 Silent p.Q225Q 0.09 TCGA-D7-A6EZ-01 10 105792440 105792440 C A COL17A1 Missense_Mutation p.G1477V 0.55 unknown(0) TCGA-D7-A6EZ-01 10 118397924 118397924 G T PNLIPRP2 Missense_Mutation p.V370L 0.36 tolerated(0.18) benign(0.003) TCGA-D7-A6EZ-01 10 127436538 127436538 A T EDRF1 Missense_Mutation p.H1027L 0.05 deleterious(0) possibly_damaging(0.691) TCGA-D7-A6EZ-01 10 129224264 129224264 G A DOCK1 Missense_Mutation p.V1614I 0.03 tolerated(0.24) benign(0.001) TCGA-D7-A6EZ-01 10 129899748 129899748 C G MKI67 Missense_Mutation p.R3160T 0.39 tolerated(0.29) possibly_damaging(0.838) TCGA-D7-A6EZ-01 10 27687309 27687309 A G PTCHD3 Missense_Mutation p.S740P 0.36 tolerated(0.08) benign(0.015) TCGA-D7-A6EZ-01 10 50227521 50227521 T A VSTM4 3'UTR 0.15 TCGA-D7-A6EZ-01 10 5436181 5436181 C A TUBAL3 Nonsense_Mutation p.E214* 0.31 TCGA-D7-A6EZ-01 10 70333844 70333844 G T TET1 Missense_Mutation p.L583F 0.49 deleterious(0.01) probably_damaging(0.979) TCGA-D7-A6EZ-01 10 7205858 7205858 T G SFMBT2 Missense_Mutation p.Q853H 0.27 deleterious(0) probably_damaging(0.992) TCGA-D7-A6EZ-01 10 74916070 74916070 C T ECD Missense_Mutation p.E185K 0.43 tolerated(0.43) benign(0.052) TCGA-D7-A6EZ-01 11 111365983 111365983 A G BTG4 Silent p.N189N 0.34 TCGA-D7-A6EZ-01 11 12234898 12234898 T C MICAL2 Missense_Mutation p.I263T 0.29 deleterious(0) probably_damaging(0.998) TCGA-D7-A6EZ-01 11 124748251 124748251 A G ROBO3 Missense_Mutation p.N1080S 0.43 tolerated(0.48) benign(0.006) TCGA-D7-A6EZ-01 11 18308255 18308255 G A HPS5 Missense_Mutation p.S907L 0.33 tolerated(0.2) benign(0.003) TCGA-D7-A6EZ-01 11 2182157 2182157 G T INS-IGF2 Silent p.A15A 0.40 TCGA-D7-A6EZ-01 11 3041523 3041523 C T CARS Missense_Mutation p.R398H 0.24 deleterious(0.05) benign(0.262) TCGA-D7-A6EZ-01 11 46569856 46569856 A C AMBRA1 Silent p.A25A 0.34 TCGA-D7-A6EZ-01 11 47354132 47354132 G A MYBPC3 Silent p.V1204V 0.18 TCGA-D7-A6EZ-01 11 49831405 49831405 C A RP11-707M1.1 RNA 0.36 TCGA-D7-A6EZ-01 11 5013489 5013489 T C MMP26 3'UTR 0.31 TCGA-D7-A6EZ-01 11 6048178 6048178 T A OR56A1 Missense_Mutation p.I253F 0.20 deleterious(0) possibly_damaging(0.659) TCGA-D7-A6EZ-01 11 61133531 61133546 CAGTCCTCTTCAACAT - TMEM138 Frame_Shift_Del p.V49Sfs*31 0.19 TCGA-D7-A6EZ-01 11 62376087 62376087 G C EML3 Missense_Mutation p.T346R 0.28 deleterious(0) possibly_damaging(0.749) TCGA-D7-A6EZ-01 11 63520546 63520546 T C RTN3 Silent p.A961A 0.30 TCGA-D7-A6EZ-01 11 65270449 65270449 G A MALAT1 RNA 0.44 TCGA-D7-A6EZ-01 11 92088009 92088009 G C FAT3 Missense_Mutation p.E911Q 0.27 possibly_damaging(0.704) TCGA-D7-A6EZ-01 11 9225482 9225482 T A DENND5A Missense_Mutation p.Q225L 0.38 deleterious(0.01) possibly_damaging(0.908) TCGA-D7-A6EZ-01 11 93523876 93523876 C T MED17 Missense_Mutation p.S185F 0.28 tolerated(0.7) benign(0.361) TCGA-D7-A6EZ-01 11 93797566 93797566 T A HEPHL1 Missense_Mutation p.V233E 0.34 deleterious(0) probably_damaging(0.997) TCGA-D7-A6EZ-01 12 10777274 10777274 C G STYK1 Missense_Mutation p.R301T 0.30 deleterious(0.02) benign(0.025) TCGA-D7-A6EZ-01 12 113553490 113553490 A G RASAL1 Missense_Mutation p.L318P 0.40 deleterious(0) probably_damaging(0.964) TCGA-D7-A6EZ-01 12 120575734 120575734 C A GCN1L1 Nonsense_Mutation p.E2122* 0.38 TCGA-D7-A6EZ-01 12 122691057 122691057 C G B3GNT4 Missense_Mutation p.L87V 0.33 tolerated(0.43) benign(0.018) TCGA-D7-A6EZ-01 12 12274059 12274064 CTCAGG TGTAC LRP6 Missense_Mutation 0.33 TCGA-D7-A6EZ-01 12 124289583 124289583 C G DNAH10 Missense_Mutation p.L877V 0.37 benign(0.005) TCGA-D7-A6EZ-01 12 12871131 12871131 G - CDKN1B Frame_Shift_Del p.A121Lfs*24 0.28 TCGA-D7-A6EZ-01 12 132514584 132514584 C T EP400 Missense_Mutation p.R1879C 0.30 unknown(0) TCGA-D7-A6EZ-01 12 29630148 29630148 G C OVCH1 Missense_Mutation p.L422V 0.36 tolerated(1) benign(0) TCGA-D7-A6EZ-01 12 2968015 2968037 GGAGAAGAGTTGCCAAAGGGGAC - FOXM1 Frame_Shift_Del p.V725Lfs*35 0.30 TCGA-D7-A6EZ-01 12 32996162 32996162 G A PKP2 Silent p.G488G 0.18 TCGA-D7-A6EZ-01 12 32996166 32996166 T C PKP2 Missense_Mutation p.Q487R 0.19 tolerated_low_confidence(0.52) benign(0.001) TCGA-D7-A6EZ-01 12 39223183 39223183 T A CPNE8 Silent p.I135I 0.32 TCGA-D7-A6EZ-01 12 48866620 48866620 C T ANP32D Missense_Mutation p.A58V 0.27 deleterious(0.03) benign(0.04) TCGA-D7-A6EZ-01 12 52843273 52843273 C T KRT6B Missense_Mutation p.E353K 0.30 deleterious(0) probably_damaging(0.973) TCGA-D7-A6EZ-01 12 57642901 57642901 T C STAC3 Missense_Mutation p.N86S 0.26 tolerated(0.13) probably_damaging(0.978) TCGA-D7-A6EZ-01 13 32954167 32954167 G C BRCA2 Missense_Mutation p.Q3047H 0.10 deleterious(0.04) benign(0.064) TCGA-D7-A6EZ-01 14 104165811 104165811 C G XRCC3 Missense_Mutation p.E222Q 0.46 tolerated(0.08) possibly_damaging(0.868) TCGA-D7-A6EZ-01 14 20820433 20820433 A G PARP2 Missense_Mutation p.E189G 0.27 tolerated(0.1) benign(0.155) TCGA-D7-A6EZ-01 14 23792277 23792277 T C PABPN1 Splice_Site p.X178_splice 0.37 TCGA-D7-A6EZ-01 14 24535792 24535792 G A LRRC16B Silent p.K1203K 0.37 TCGA-D7-A6EZ-01 14 24676673 24676673 G T TSSK4 Missense_Mutation p.E264D 0.29 tolerated(0.13) possibly_damaging(0.807) TCGA-D7-A6EZ-01 14 25077579 25077579 C T GZMH Missense_Mutation p.R32H 0.32 tolerated(0.26) benign(0.27) TCGA-D7-A6EZ-01 14 32561318 32561318 A C ARHGAP5 Missense_Mutation p.E481D 0.46 tolerated(0.07) benign(0.134) TCGA-D7-A6EZ-01 14 60069958 60069958 G A RTN1 Missense_Mutation p.T734I 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-D7-A6EZ-01 14 64194101 64194101 A C SGPP1 Missense_Mutation p.S188A 0.25 deleterious(0.02) benign(0.167) TCGA-D7-A6EZ-01 14 74009789 74009789 C G ACOT1 Silent p.S232S 0.25 TCGA-D7-A6EZ-01 14 94914550 94914550 T A SERPINA11 Missense_Mutation p.T188S 0.53 deleterious(0.01) probably_damaging(0.989) TCGA-D7-A6EZ-01 15 23812252 23812252 C T MKRN3 Silent p.Y441Y 0.32 TCGA-D7-A6EZ-01 15 25514970 25514970 G A SNORD115-48 RNA 0.27 TCGA-D7-A6EZ-01 15 28369282 28369313 GCAGGGGCAGAAGAGCTCGGAGAGGTGGTGCA - HERC2 Frame_Shift_Del p.L4353Hfs*87 0.23 TCGA-D7-A6EZ-01 15 32972071 32972071 C T SCG5 Nonsense_Mutation p.Q111* 0.41 TCGA-D7-A6EZ-01 15 45248926 45248926 G C C15orf43 Missense_Mutation p.G4R 0.32 tolerated(0.11) benign(0.181) TCGA-D7-A6EZ-01 15 52545628 52545630 TTC - MYO5C In_Frame_Del p.E474del 0.35 TCGA-D7-A6EZ-01 15 55710308 55710308 A C C15orf65 Intron 0.42 TCGA-D7-A6EZ-01 15 62264958 62264958 C G VPS13C Missense_Mutation p.D875H 0.33 deleterious(0) possibly_damaging(0.841) TCGA-D7-A6EZ-01 15 64455190 64455190 A G PPIB 5'UTR 0.17 TCGA-D7-A6EZ-01 15 73408892 73408892 C T NEO1 Nonsense_Mutation p.R48* 0.38 TCGA-D7-A6EZ-01 15 86124979 86124979 C G AKAP13 Missense_Mutation p.T1227S 0.50 tolerated_low_confidence(0.51) benign(0.033) TCGA-D7-A6EZ-01 16 1536494 1536494 G A PTX4 Nonsense_Mutation p.R290* 0.09 TCGA-D7-A6EZ-01 16 19554080 19554080 C G CCP110 Missense_Mutation p.Q789E 0.38 deleterious(0.01) probably_damaging(0.932) TCGA-D7-A6EZ-01 16 19883344 19883344 G A GPRC5B Missense_Mutation p.T275M 0.31 deleterious(0) benign(0.11) TCGA-D7-A6EZ-01 16 2225873 2225886 GCAGACGTCTGGTG - TRAF7 Frame_Shift_Del p.T557Rfs*26 0.36 TCGA-D7-A6EZ-01 16 29816274 29816274 G T KIF22 Missense_Mutation p.S606I 0.30 deleterious(0.02) possibly_damaging(0.832) TCGA-D7-A6EZ-01 16 47162251 47162251 A G NETO2 Missense_Mutation p.Y156H 0.39 deleterious(0) probably_damaging(0.992) TCGA-D7-A6EZ-01 16 48121987 48121987 G T ABCC12 Nonsense_Mutation p.S1162* 0.36 TCGA-D7-A6EZ-01 16 53679591 53679591 T A RPGRIP1L Missense_Mutation p.I877L 0.33 tolerated(1) benign(0.014) TCGA-D7-A6EZ-01 16 56441887 56441887 T C AMFR Missense_Mutation p.M219V 0.28 tolerated(0.06) benign(0.186) TCGA-D7-A6EZ-01 16 58768175 58768175 G C GOT2 5'UTR 0.33 TCGA-D7-A6EZ-01 16 70509269 70509269 G A FUK Silent p.A798A 0.36 TCGA-D7-A6EZ-01 16 70891638 70891638 A C HYDIN Missense_Mutation p.S4089A 0.18 possibly_damaging(0.467) TCGA-D7-A6EZ-01 16 716275 716275 C T WDR90 Silent p.C1555C 0.46 TCGA-D7-A6EZ-01 16 74496081 74496081 C G GLG1 Missense_Mutation p.D983H 0.32 deleterious(0.02) possibly_damaging(0.785) TCGA-D7-A6EZ-01 16 89806506 89806506 C G FANCA Missense_Mutation p.S1277T 0.32 tolerated(0.19) benign(0.418) TCGA-D7-A6EZ-01 17 16004583 16004588 CATCCA - NCOR1 In_Frame_Del p.V889_D890del 0.23 TCGA-D7-A6EZ-01 17 16526673 16526673 G C ZNF624 Missense_Mutation p.F509L 0.28 deleterious(0.03) probably_damaging(0.989) TCGA-D7-A6EZ-01 17 16725777 16725777 G A AC022596.6 RNA 0.13 TCGA-D7-A6EZ-01 17 18022927 18022927 G C MYO15A Missense_Mutation p.W271C 0.25 probably_damaging(0.992) TCGA-D7-A6EZ-01 17 29113018 29113018 C G CRLF3 Missense_Mutation p.D331H 0.39 deleterious(0) probably_damaging(0.948) TCGA-D7-A6EZ-01 17 34266318 34266318 C T LYZL6 Missense_Mutation p.A15T 0.35 tolerated(0.48) benign(0.012) TCGA-D7-A6EZ-01 17 3592861 3592861 G C P2RX5 Missense_Mutation p.N226K 0.29 deleterious(0.02) possibly_damaging(0.809) TCGA-D7-A6EZ-01 17 38323804 38323809 GCCAGA - CASC3 In_Frame_Del p.E532_P533del 0.26 TCGA-D7-A6EZ-01 17 40659608 40659608 A G ATP6V0A1 Missense_Mutation p.H699R 0.38 tolerated(0.22) benign(0.297) TCGA-D7-A6EZ-01 17 4575317 4575317 T A PELP1 Missense_Mutation p.E990V 0.32 unknown(0) TCGA-D7-A6EZ-01 17 47284216 47284223 TCCTTGAT - GNGT2 Frame_Shift_Del p.I36Vfs*17 0.21 TCGA-D7-A6EZ-01 17 56082686 56082686 G C SRSF1 3'UTR 0.20 TCGA-D7-A6EZ-01 17 56270780 56270780 G C EPX Silent p.L73L 0.24 TCGA-D7-A6EZ-01 17 56274361 56274361 C A EPX Missense_Mutation p.A288E 0.25 deleterious(0) possibly_damaging(0.852) TCGA-D7-A6EZ-01 17 62271199 62271199 C A TEX2 Missense_Mutation p.K632N 0.10 deleterious(0) probably_damaging(1) TCGA-D7-A6EZ-01 17 63200400 63200400 T C RGS9 Missense_Mutation p.I395T 0.17 deleterious(0) probably_damaging(1) TCGA-D7-A6EZ-01 17 67145207 67145207 C A ABCA10 Missense_Mutation p.E1500D 0.36 deleterious(0.01) benign(0.325) TCGA-D7-A6EZ-01 17 72519041 72519041 T A CD300LB Splice_Site p.X185_splice 0.48 TCGA-D7-A6EZ-01 17 72709021 72709021 G T CD300LF 5'UTR 0.46 TCGA-D7-A6EZ-01 17 73488605 73488615 TGACTACCACC - KIAA0195 Frame_Shift_Del p.D550Gfs*18 0.31 TCGA-D7-A6EZ-01 17 79973161 79973161 C T ASPSCR1 Missense_Mutation p.P522S 0.41 tolerated_low_confidence(0.24) benign(0.192) TCGA-D7-A6EZ-01 18 21703872 21703872 A G TTC39C Missense_Mutation p.K421E 0.21 deleterious(0.01) probably_damaging(0.93) TCGA-D7-A6EZ-01 18 5433965 5433965 C T EPB41L3 Missense_Mutation p.R254H 0.43 deleterious(0.05) possibly_damaging(0.481) TCGA-D7-A6EZ-01 18 8296368 8296368 C T PTPRM Silent p.S919S 0.46 TCGA-D7-A6EZ-01 19 10402309 10402309 G T ICAM5 Missense_Mutation p.R166L 0.37 deleterious(0) benign(0.39) TCGA-D7-A6EZ-01 19 19337345 19337345 G C NCAN Missense_Mutation p.D375H 0.24 tolerated(0.12) probably_damaging(0.998) TCGA-D7-A6EZ-01 19 1969758 1969758 G C CSNK1G2 5'UTR 0.31 TCGA-D7-A6EZ-01 19 22363387 22363387 A G ZNF676 Missense_Mutation p.S378P 0.26 deleterious(0.01) probably_damaging(0.979) TCGA-D7-A6EZ-01 19 23836771 23836771 T G ZNF675 Missense_Mutation p.T322P 0.20 deleterious(0.02) possibly_damaging(0.761) TCGA-D7-A6EZ-01 19 36357139 36357139 C T KIRREL2 Silent p.F624F 0.30 TCGA-D7-A6EZ-01 19 37643698 37643698 T A ZNF585A Missense_Mutation p.E313V 0.21 tolerated(0.32) probably_damaging(0.976) TCGA-D7-A6EZ-01 19 4555047 4555047 C T SEMA6B Missense_Mutation p.R208H 0.32 deleterious(0) probably_damaging(0.999) TCGA-D7-A6EZ-01 19 45923579 45923579 C A ERCC1 Intron 0.46 TCGA-D7-A6EZ-01 19 47542712 47542712 G A NPAS1 Silent p.V284V 0.30 TCGA-D7-A6EZ-01 19 49260198 49260198 A T FGF21 Missense_Mutation p.K84I 0.38 deleterious(0.04) probably_damaging(1) TCGA-D7-A6EZ-01 19 55341820 55341833 GAATCTGAAGGCGT - KIR3DL1 3'UTR 0.79 TCGA-D7-A6EZ-01 19 57724355 57724355 C G ZNF264 3'UTR 0.53 TCGA-D7-A6EZ-01 19 6001988 6001988 C T RFX2 Missense_Mutation p.R566Q 0.30 tolerated(0.2) benign(0.014) TCGA-D7-A6EZ-01 19 6714022 6714022 C G C3 Missense_Mutation p.E252Q 0.23 tolerated(0.27) benign(0.028) TCGA-D7-A6EZ-01 19 7117150 7117150 C T INSR Missense_Mutation p.E1356K 0.32 deleterious(0.02) possibly_damaging(0.453) TCGA-D7-A6EZ-01 19 855771 855778 GGCCGGCA - ELANE Frame_Shift_Del p.Q194Rfs*93 0.17 TCGA-D7-A6EZ-01 19 8841637 8841637 T C OR2Z1 Missense_Mutation p.S83P 0.40 tolerated(0.06) benign(0) TCGA-D7-A6EZ-01 19 9075305 9075305 A G MUC16 Silent p.P4047P 0.33 TCGA-D7-A6EZ-01 1 10479840 10479840 A C PGD 3'UTR 0.30 TCGA-D7-A6EZ-01 1 112042829 112042829 G A ADORA3 Intron 0.33 TCGA-D7-A6EZ-01 1 11576170 11576181 CACCTCCCTGAC - PTCHD2 In_Frame_Del p.S569_T572del 0.24 TCGA-D7-A6EZ-01 1 11918304 11918304 G A NPPB Missense_Mutation p.R119W 0.29 deleterious(0) probably_damaging(1) TCGA-D7-A6EZ-01 1 145293555 145293555 C A NBPF10 Missense_Mutation p.F50L 0.08 benign(0.246) TCGA-D7-A6EZ-01 1 145416671 145416671 C G HFE2 Missense_Mutation p.T339S 0.28 tolerated(0.16) benign(0.026) TCGA-D7-A6EZ-01 1 152488000 152488000 C G CRCT1 Missense_Mutation p.C47W 0.36 unknown(0) TCGA-D7-A6EZ-01 1 156814270 156814270 G C INSRR Missense_Mutation p.F907L 0.31 tolerated(0.06) probably_damaging(0.974) TCGA-D7-A6EZ-01 1 160267152 160267152 G C COPA Missense_Mutation p.I757M 0.30 tolerated(0.34) benign(0.373) TCGA-D7-A6EZ-01 1 16952885 16952885 G A CROCCP2 3'Flank 0.09 TCGA-D7-A6EZ-01 1 182844052 182844052 A G DHX9 Missense_Mutation p.K593R 0.37 tolerated(0.78) benign(0.008) TCGA-D7-A6EZ-01 1 19184054 19184054 T G TAS1R2 Missense_Mutation p.D85A 0.32 tolerated(0.69) benign(0.004) TCGA-D7-A6EZ-01 1 19597373 19597373 C G AKR7L 5'UTR 0.16 TCGA-D7-A6EZ-01 1 1960679 1960679 C T GABRD Missense_Mutation p.A274V 0.53 deleterious(0.03) benign(0.36) TCGA-D7-A6EZ-01 1 19612803 19612803 A G AKR7A3 Missense_Mutation p.F93S 0.17 tolerated(1) benign(0) TCGA-D7-A6EZ-01 1 19612805 19612805 C T AKR7A3 Silent p.R92R 0.17 TCGA-D7-A6EZ-01 1 201437501 201437501 G C PHLDA3 3'UTR 0.32 TCGA-D7-A6EZ-01 1 220970066 220970066 C G MARC1 Silent p.P177P 0.27 TCGA-D7-A6EZ-01 1 221058095 221058095 C A HLX 3'UTR 0.39 TCGA-D7-A6EZ-01 1 22156481 22156481 C G HSPG2 Intron 0.33 TCGA-D7-A6EZ-01 1 223176822 223176822 C G DISP1 Missense_Mutation p.L695V 0.33 tolerated(0.29) benign(0.012) TCGA-D7-A6EZ-01 1 228481237 228481237 G A OBSCN Missense_Mutation p.R4113H 0.30 benign(0.017) TCGA-D7-A6EZ-01 1 236647128 236647128 G A EDARADD 3'Flank 0.42 TCGA-D7-A6EZ-01 1 241667375 241667375 G C FH Missense_Mutation p.P359A 0.31 deleterious(0) probably_damaging(0.981) TCGA-D7-A6EZ-01 1 24486013 24486013 C T IFNLR1 Silent p.P207P 0.28 TCGA-D7-A6EZ-01 1 24669201 24669201 G A GRHL3 Missense_Mutation p.M408I 0.08 tolerated(1) possibly_damaging(0.831) TCGA-D7-A6EZ-01 1 24669202 24669202 C A GRHL3 Missense_Mutation p.R409S 0.08 deleterious(0) probably_damaging(0.981) TCGA-D7-A6EZ-01 1 247588068 247588068 G A NLRP3 Silent p.A441A 0.26 TCGA-D7-A6EZ-01 1 247902707 247902707 C A OR14K1 Missense_Mutation p.A264E 0.38 tolerated(0.07) benign(0.021) TCGA-D7-A6EZ-01 1 2527503 2527503 G A MMEL1 Missense_Mutation p.T482M 0.34 deleterious(0.04) possibly_damaging(0.887) TCGA-D7-A6EZ-01 1 26356983 26356983 A T EXTL1 Missense_Mutation p.Q333L 0.34 deleterious(0) possibly_damaging(0.803) TCGA-D7-A6EZ-01 1 26597570 26597570 G A CEP85 Nonsense_Mutation p.W572* 0.39 TCGA-D7-A6EZ-01 1 27100151 27100151 C A ARID1A Nonsense_Mutation p.S1316* 0.63 TCGA-D7-A6EZ-01 1 27875278 27875278 G C AHDC1 Missense_Mutation p.L1117V 0.31 tolerated(0.11) possibly_damaging(0.567) TCGA-D7-A6EZ-01 1 28835349 28835349 G C SNORA73B 3'Flank 0.67 TCGA-D7-A6EZ-01 1 36028227 36028227 G A NCDN Missense_Mutation p.A460T 0.32 deleterious(0) probably_damaging(0.968) TCGA-D7-A6EZ-01 1 46496357 46496357 G T MAST2 Nonsense_Mutation p.E878* 0.50 TCGA-D7-A6EZ-01 1 55070856 55070856 G C ACOT11 Missense_Mutation p.Q448H 0.36 tolerated(0.2) benign(0) TCGA-D7-A6EZ-01 1 55175737 55175737 G C MROH7 Missense_Mutation p.W1283C 0.31 deleterious(0.01) possibly_damaging(0.878) TCGA-D7-A6EZ-01 1 55603306 55603306 T A USP24 Missense_Mutation p.Q1028L 0.35 deleterious(0.02) benign(0.031) TCGA-D7-A6EZ-01 1 55603307 55603307 G T USP24 Missense_Mutation p.Q1028K 0.37 tolerated(0.06) benign(0.031) TCGA-D7-A6EZ-01 1 76257209 76257209 G A RABGGTB Missense_Mutation p.D178N 0.37 deleterious(0) probably_damaging(1) TCGA-D7-A6EZ-01 20 30037835 30037835 G A DEFB123 Missense_Mutation p.G21D 0.25 tolerated(0.96) unknown(0) TCGA-D7-A6EZ-01 20 30253701 30253703 TGG C BCL2L1 3'UTR 0.25 TCGA-D7-A6EZ-01 20 3145759 3145759 G C LZTS3 Missense_Mutation p.Q455E 0.20 deleterious(0) probably_damaging(0.991) TCGA-D7-A6EZ-01 20 44519208 44519208 G C NEURL2 Silent p.L141L 0.17 TCGA-D7-A6EZ-01 20 47611101 47611101 A T ARFGEF2 Silent p.T1029T 0.17 TCGA-D7-A6EZ-01 20 49621343 49621343 C A KCNG1 Missense_Mutation p.G259C 0.40 deleterious(0) probably_damaging(0.931) TCGA-D7-A6EZ-01 20 5935803 5935803 G A MCM8 Missense_Mutation p.G131D 0.26 tolerated(1) benign(0) TCGA-D7-A6EZ-01 20 61488883 61488883 C G TCFL5 Missense_Mutation p.G368R 0.12 tolerated(0.06) possibly_damaging(0.839) TCGA-D7-A6EZ-01 21 28337677 28337677 T G ADAMTS5 Missense_Mutation p.Q345P 0.34 deleterious(0) probably_damaging(0.988) TCGA-D7-A6EZ-01 21 40550456 40550456 G T PSMG1 Missense_Mutation p.L192I 0.31 deleterious(0) probably_damaging(0.999) TCGA-D7-A6EZ-01 21 46876079 46876079 C A COL18A1 Missense_Mutation p.P212Q 0.25 unknown(0) TCGA-D7-A6EZ-01 21 46932280 46932280 A G COL18A1 Missense_Mutation p.I1510V 0.23 benign(0.413) TCGA-D7-A6EZ-01 22 20796300 20796300 G A KLHL22 3'UTR 0.35 TCGA-D7-A6EZ-01 22 21333939 21333939 G A AIFM3 Missense_Mutation p.V534I 0.04 tolerated(0.68) benign(0.353) TCGA-D7-A6EZ-01 22 37271939 37271939 C G NCF4 Missense_Mutation p.S291C 0.37 deleterious_low_confidence(0) possibly_damaging(0.7) TCGA-D7-A6EZ-01 22 37539616 37539616 G C IL2RB Missense_Mutation p.Q50E 0.24 tolerated(0.21) benign(0.03) TCGA-D7-A6EZ-01 2 100623273 100623273 T C AFF3 Missense_Mutation p.T257A 0.35 deleterious(0) probably_damaging(0.996) TCGA-D7-A6EZ-01 2 103343411 103343411 C A MFSD9 Missense_Mutation p.G107V 0.09 deleterious(0) probably_damaging(1) TCGA-D7-A6EZ-01 2 109106410 109106410 T A GCC2 Missense_Mutation p.L1390Q 0.09 deleterious(0) probably_damaging(0.998) TCGA-D7-A6EZ-01 2 128467158 128467158 T A WDR33 Splice_Site p.X1158_splice 0.34 TCGA-D7-A6EZ-01 2 166747428 166747428 T C TTC21B Silent p.R1007R 0.27 TCGA-D7-A6EZ-01 2 168100398 168100398 A G XIRP2 Silent p.K832K 0.33 TCGA-D7-A6EZ-01 2 168108443 168108443 C G XIRP2 Missense_Mutation p.S3514C 0.28 probably_damaging(0.937) TCGA-D7-A6EZ-01 2 171716394 171716394 C T GAD1 3'UTR 0.43 TCGA-D7-A6EZ-01 2 187531441 187531441 G C ITGAV Missense_Mutation p.G726A 0.29 deleterious(0.02) benign(0.084) TCGA-D7-A6EZ-01 2 206921058 206921058 G A INO80D Silent p.D276D 0.39 TCGA-D7-A6EZ-01 2 210574917 210574917 A C MAP2 Missense_Mutation p.K1671T 0.25 deleterious(0) probably_damaging(0.991) TCGA-D7-A6EZ-01 2 215831659 215831659 C T ABCA12 Missense_Mutation p.G1933S 0.28 deleterious(0.02) probably_damaging(0.979) TCGA-D7-A6EZ-01 2 220078577 220078577 C T ABCB6 Missense_Mutation p.A517T 0.30 deleterious(0.01) probably_damaging(0.99) TCGA-D7-A6EZ-01 2 220115634 220115645 GGTAGGGCACCA - TUBA4A In_Frame_Del p.L259_Y262del 0.30 TCGA-D7-A6EZ-01 2 220429980 220429980 G A OBSL1 Silent p.F797F 0.18 TCGA-D7-A6EZ-01 2 233407629 233407629 G C CHRNG Missense_Mutation p.K214N 0.36 deleterious(0.01) possibly_damaging(0.688) TCGA-D7-A6EZ-01 2 234854619 234854619 C T TRPM8 Silent p.V273V 0.26 TCGA-D7-A6EZ-01 2 26915889 26915889 G A KCNK3 Missense_Mutation p.R49Q 0.44 tolerated(0.26) benign(0.004) TCGA-D7-A6EZ-01 2 37268331 37268331 G A HEATR5B Missense_Mutation p.T934I 0.32 deleterious(0) benign(0.406) TCGA-D7-A6EZ-01 2 38540290 38540290 T G ATL2 Intron 0.17 TCGA-D7-A6EZ-01 2 40657254 40657254 T G SLC8A1 Missense_Mutation p.K56T 0.35 tolerated(0.29) benign(0.032) TCGA-D7-A6EZ-01 2 42990074 42990074 C T OXER1 Missense_Mutation p.E416K 0.28 deleterious_low_confidence(0.04) benign(0.032) TCGA-D7-A6EZ-01 2 47249095 47249095 C T TTC7A Missense_Mutation p.T496I 0.36 tolerated(0.08) benign(0.006) TCGA-D7-A6EZ-01 2 48915642 48915642 C G LHCGR Missense_Mutation p.D432H 0.30 deleterious(0) probably_damaging(0.93) TCGA-D7-A6EZ-01 2 61719473 61719473 G A XPO1 Silent p.F570F 0.27 TCGA-D7-A6EZ-01 2 74745582 74745582 G T DQX1 Silent p.V715V 0.32 TCGA-D7-A6EZ-01 3 105264121 105264121 C T ALCAM Missense_Mutation p.A349V 0.37 deleterious(0.05) benign(0.026) TCGA-D7-A6EZ-01 3 121410874 121410893 AGCTGATTGGTTTTATCAAC - GOLGB1 Frame_Shift_Del p.V2440Yfs*23 0.12 TCGA-D7-A6EZ-01 3 127786365 127786365 C G SEC61A1 Silent p.V359V 0.34 TCGA-D7-A6EZ-01 3 132166292 132166292 C A DNAJC13 Missense_Mutation p.T91K 0.17 tolerated(0.24) benign(0.109) TCGA-D7-A6EZ-01 3 134078242 134078242 G A AMOTL2 Missense_Mutation p.R663W 0.30 deleterious(0) probably_damaging(1) TCGA-D7-A6EZ-01 3 138121080 138121080 G A MRAS Missense_Mutation p.G199D 0.12 tolerated(0.23) benign(0) TCGA-D7-A6EZ-01 3 138191676 138191676 C T ESYT3 Silent p.L738L 0.46 TCGA-D7-A6EZ-01 3 157146233 157146233 G T VEPH1 Missense_Mutation p.Q192K 0.19 tolerated(0.07) benign(0.317) TCGA-D7-A6EZ-01 3 170912388 170912388 C T TNIK Missense_Mutation p.D115N 0.21 deleterious(0) unknown(0) TCGA-D7-A6EZ-01 3 178927451 178927451 C T PIK3CA Missense_Mutation p.S405F 0.14 deleterious(0) probably_damaging(0.995) TCGA-D7-A6EZ-01 3 178984437 178984437 C G KCNMB3 Missense_Mutation p.R21T 0.14 deleterious(0) possibly_damaging(0.843) TCGA-D7-A6EZ-01 3 181430319 181430319 C A SOX2 Silent p.R57R 0.11 TCGA-D7-A6EZ-01 3 194346695 194346719 CTGCTAGGTAGGCACCAGTGAAAAC - TMEM44 Frame_Shift_Del p.V89Lfs*4 0.22 TCGA-D7-A6EZ-01 3 195047675 195047675 A G ACAP2 Missense_Mutation p.V228A 0.32 tolerated(0.1) benign(0.049) TCGA-D7-A6EZ-01 3 35780834 35780834 G T ARPP21 Missense_Mutation p.G558V 0.31 deleterious(0) benign(0.038) TCGA-D7-A6EZ-01 3 39174717 39174717 C G TTC21A Missense_Mutation p.P920A 0.30 tolerated(0.07) possibly_damaging(0.611) TCGA-D7-A6EZ-01 3 41266113 41266113 C G CTNNB1 Missense_Mutation p.S37C 0.71 deleterious(0) probably_damaging(0.986) TCGA-D7-A6EZ-01 3 45943175 45943175 T G CCR9 Missense_Mutation p.F299V 0.29 tolerated(0.49) benign(0.027) TCGA-D7-A6EZ-01 3 46415067 46415067 G A CCR5 Missense_Mutation p.R225Q 0.30 tolerated(0.06) benign(0.407) TCGA-D7-A6EZ-01 3 48604364 48604364 G A COL7A1 Silent p.G2734G 0.34 TCGA-D7-A6EZ-01 3 50231018 50231029 AGCGGCTGTGGA - GNAT1 In_Frame_Del p.R125_K128del 0.11 TCGA-D7-A6EZ-01 3 51746896 51746896 T G GRM2 Missense_Mutation p.N286K 0.26 deleterious(0) probably_damaging(0.93) TCGA-D7-A6EZ-01 3 53851805 53851805 T A CHDH Nonstop_Mutation p.*595Lext*13 0.31 TCGA-D7-A6EZ-01 3 62278384 62278384 G T PTPRG Intron 0.33 TCGA-D7-A6EZ-01 3 81695552 81695552 G T GBE1 Missense_Mutation p.A258E 0.30 deleterious(0) probably_damaging(0.997) TCGA-D7-A6EZ-01 3 81754641 81754641 T C GBE1 Silent p.K89K 0.25 TCGA-D7-A6EZ-01 3 97868957 97868957 C A OR5H14 Missense_Mutation p.A243D 0.24 deleterious(0.01) possibly_damaging(0.892) TCGA-D7-A6EZ-01 4 106879639 106879639 C A NPNT Missense_Mutation p.P421T 0.28 deleterious(0.03) probably_damaging(0.999) TCGA-D7-A6EZ-01 4 126411252 126411252 C T FAT4 Silent p.V4425V 0.33 TCGA-D7-A6EZ-01 4 128865029 128865029 G C MFSD8 Missense_Mutation p.P106R 0.32 deleterious(0) probably_damaging(0.999) TCGA-D7-A6EZ-01 4 138450910 138450910 G A PCDH18 Missense_Mutation p.S778F 0.18 deleterious(0.02) probably_damaging(0.976) TCGA-D7-A6EZ-01 4 146032195 146032195 T G ABCE1 Missense_Mutation p.V230G 0.36 deleterious(0) possibly_damaging(0.673) TCGA-D7-A6EZ-01 4 153690957 153690957 C G TIGD4 Missense_Mutation p.L400F 0.43 tolerated(0.21) benign(0.004) TCGA-D7-A6EZ-01 4 3251139 3251139 G A MSANTD1 Missense_Mutation p.E64K 0.21 deleterious(0) probably_damaging(0.999) TCGA-D7-A6EZ-01 4 72429557 72429557 G A SLC4A4 Intron 0.31 TCGA-D7-A6EZ-01 4 88940704 88940704 T A PKD2 Missense_Mutation p.F230L 0.44 deleterious(0) probably_damaging(0.993) TCGA-D7-A6EZ-01 5 112174114 112174114 A G APC Silent p.E941E 0.30 TCGA-D7-A6EZ-01 5 122682199 122682199 T C CEP120 3'UTR 0.28 TCGA-D7-A6EZ-01 5 1282621 1282621 C T TERT Silent p.T564T 0.42 TCGA-D7-A6EZ-01 5 132009878 132009878 G T IL4 Splice_Site p.X45_splice 0.27 TCGA-D7-A6EZ-01 5 133914666 133914666 C T JADE2 Missense_Mutation p.P678S 0.39 tolerated(0.41) benign(0) TCGA-D7-A6EZ-01 5 13717530 13717530 T G DNAH5 Missense_Mutation p.K4200T 0.16 possibly_damaging(0.728) TCGA-D7-A6EZ-01 5 139232604 139232604 C T NRG2 Missense_Mutation p.R434Q 0.29 deleterious(0) probably_damaging(0.999) TCGA-D7-A6EZ-01 5 140811832 140811832 G A PCDHGA12 Silent p.S502S 0.33 TCGA-D7-A6EZ-01 5 141336048 141336048 C A PCDH12 Missense_Mutation p.A457S 0.32 tolerated(0.07) possibly_damaging(0.51) TCGA-D7-A6EZ-01 5 14488285 14488285 C T TRIO Silent p.H2516H 0.38 TCGA-D7-A6EZ-01 5 149215999 149215999 C T PPARGC1B Nonsense_Mutation p.R661* 0.35 TCGA-D7-A6EZ-01 5 149901049 149901049 C A NDST1 Missense_Mutation p.P78H 0.38 tolerated(0.13) benign(0.252) TCGA-D7-A6EZ-01 5 154304027 154304027 A T GEMIN5 Splice_Site p.X460_splice 0.35 TCGA-D7-A6EZ-01 5 156923951 156923951 G T ADAM19 Missense_Mutation p.N515K 0.47 deleterious(0) possibly_damaging(0.702) TCGA-D7-A6EZ-01 5 16681456 16681456 G A MYO10 Missense_Mutation p.S1449F 0.33 deleterious(0) probably_damaging(0.998) TCGA-D7-A6EZ-01 5 23509151 23509151 T C PRDM9 Silent p.P3P 0.20 TCGA-D7-A6EZ-01 5 33649015 33649015 T G ADAMTS12 Missense_Mutation p.K464T 0.30 deleterious(0.02) benign(0.017) TCGA-D7-A6EZ-01 5 38481923 38481923 T C LIFR Missense_Mutation p.D1023G 0.33 tolerated(0.2) benign(0.016) TCGA-D7-A6EZ-01 5 39202288 39202288 A C FYB Missense_Mutation p.F269V 0.33 deleterious(0) probably_damaging(0.997) TCGA-D7-A6EZ-01 5 40681737 40681737 C A PTGER4 Missense_Mutation p.H214Q 0.32 deleterious(0.01) benign(0.137) TCGA-D7-A6EZ-01 6 102307312 102307312 G T GRIK2 Missense_Mutation p.A490S 0.27 tolerated(0.53) benign(0.042) TCGA-D7-A6EZ-01 6 25769257 25769257 T A SLC17A4 Missense_Mutation p.C46S 0.24 tolerated(0.25) probably_damaging(1) TCGA-D7-A6EZ-01 6 25769258 25769258 G T SLC17A4 Missense_Mutation p.C46F 0.24 deleterious(0.02) probably_damaging(1) TCGA-D7-A6EZ-01 6 27775671 27775671 G T HIST1H2BL Missense_Mutation p.A5D 0.39 deleterious_low_confidence(0) benign(0.132) TCGA-D7-A6EZ-01 6 27834613 27834613 C G HIST1H1B 3'UTR 0.31 TCGA-D7-A6EZ-01 6 31238916 31238916 C A HLA-C Nonsense_Mutation p.E185* 0.12 TCGA-D7-A6EZ-01 6 31594956 31594956 G T PRRC2A Missense_Mutation p.G424V 0.40 unknown(0) TCGA-D7-A6EZ-01 6 348877 348877 C T DUSP22 Intron 0.13 TCGA-D7-A6EZ-01 6 36930864 36930864 C G PI16 Nonsense_Mutation p.S249* 0.29 TCGA-D7-A6EZ-01 6 42227417 42227417 C - TRERF1 Frame_Shift_Del p.E643Dfs*72 0.29 TCGA-D7-A6EZ-01 6 43018033 43018033 T A CUL7 Missense_Mutation p.Y530F 0.33 tolerated(0.57) benign(0.189) TCGA-D7-A6EZ-01 6 44220936 44220936 A T HSP90AB1 Missense_Mutation p.N629I 0.31 deleterious(0) probably_damaging(1) TCGA-D7-A6EZ-01 6 73023357 73023357 G A RIMS1 Missense_Mutation p.R1371H 0.42 deleterious(0.01) benign(0.005) TCGA-D7-A6EZ-01 6 75866024 75866024 G A COL12A1 Missense_Mutation p.P1067S 0.36 probably_damaging(0.976) TCGA-D7-A6EZ-01 6 83926271 83926271 C A ME1 Silent p.R498R 0.27 TCGA-D7-A6EZ-01 6 83926280 83926280 T C ME1 Silent p.E495E 0.25 TCGA-D7-A6EZ-01 7 103969565 103969565 G C LHFPL3 Missense_Mutation p.G113A 0.31 tolerated(0.72) possibly_damaging(0.453) TCGA-D7-A6EZ-01 7 107207495 107207495 A G DUS4L Intron 0.36 TCGA-D7-A6EZ-01 7 110764569 110764569 A T LRRN3 Missense_Mutation p.T581S 0.31 tolerated(0.06) benign(0.338) TCGA-D7-A6EZ-01 7 119915218 119915218 C T KCND2 Missense_Mutation p.P178S 0.38 deleterious(0.02) probably_damaging(1) TCGA-D7-A6EZ-01 7 123594238 123594238 A T SPAM1 Missense_Mutation p.K205I 0.37 deleterious(0) probably_damaging(0.979) TCGA-D7-A6EZ-01 7 128312448 128312448 A C FAM71F2 5'UTR 0.23 TCGA-D7-A6EZ-01 7 129847885 129847885 T A SSMEM1 Nonsense_Mutation p.Y45* 0.33 TCGA-D7-A6EZ-01 7 137151687 137151687 T C DGKI Intron 0.37 TCGA-D7-A6EZ-01 7 141292953 141292953 C T AGK Missense_Mutation p.L37F 0.27 deleterious(0.01) possibly_damaging(0.824) TCGA-D7-A6EZ-01 7 144098375 144098375 G A NOBOX Missense_Mutation p.P203L 0.37 deleterious(0.02) benign(0.043) TCGA-D7-A6EZ-01 7 24784184 24784184 T G DFNA5 Missense_Mutation p.E134A 0.27 tolerated(0.07) benign(0.037) TCGA-D7-A6EZ-01 7 30921846 30921846 T A FAM188B Missense_Mutation p.S674R 0.34 deleterious(0) probably_damaging(0.994) TCGA-D7-A6EZ-01 7 31920365 31920365 T C PDE1C Silent p.E139E 0.37 TCGA-D7-A6EZ-01 7 33976945 33976945 C G BMPER Silent p.S88S 0.33 TCGA-D7-A6EZ-01 7 4116752 4116752 G A SDK1 Missense_Mutation p.V1045M 0.28 deleterious(0) probably_damaging(0.996) TCGA-D7-A6EZ-01 7 42005538 42005538 C T GLI3 Missense_Mutation p.V1045M 0.31 tolerated(0.22) possibly_damaging(0.557) TCGA-D7-A6EZ-01 7 43477644 43477644 G T HECW1 Nonsense_Mutation p.E282* 0.41 TCGA-D7-A6EZ-01 7 44187361 44187361 T G GCK Missense_Mutation p.M252L 0.16 deleterious(0.02) possibly_damaging(0.578) TCGA-D7-A6EZ-01 7 74113412 74113412 C T GTF2I Silent p.F120F 0.38 TCGA-D7-A6EZ-01 7 81667494 81667494 T C CACNA2D1 Missense_Mutation p.R313G 0.39 deleterious(0) probably_damaging(0.999) TCGA-D7-A6EZ-01 7 87011819 87011819 C A CROT Missense_Mutation p.Q449K 0.36 deleterious(0) probably_damaging(1) TCGA-D7-A6EZ-01 7 90675216 90675216 T C CDK14 Missense_Mutation p.L331P 0.30 deleterious(0.01) probably_damaging(0.933) TCGA-D7-A6EZ-01 8 142204341 142204341 G A DENND3 3'UTR 0.32 TCGA-D7-A6EZ-01 8 143558547 143558547 G A BAI1 Missense_Mutation p.R377H 0.40 deleterious(0) possibly_damaging(0.812) TCGA-D7-A6EZ-01 8 145059981 145059981 G A PARP10 Missense_Mutation p.A115V 0.30 deleterious(0) possibly_damaging(0.855) TCGA-D7-A6EZ-01 8 145112528 145112528 G C OPLAH Missense_Mutation p.N415K 0.32 deleterious(0.02) benign(0.034) TCGA-D7-A6EZ-01 8 27328547 27328547 G C CHRNA2 Missense_Mutation p.S10C 0.34 tolerated_low_confidence(0.13) benign(0.415) TCGA-D7-A6EZ-01 8 57079526 57079526 A G PLAG1 Missense_Mutation p.V260A 0.27 tolerated(0.5) possibly_damaging(0.857) TCGA-D7-A6EZ-01 8 67813523 67813523 G A MCMDC2 Missense_Mutation p.R570H 0.16 deleterious(0) probably_damaging(1) TCGA-D7-A6EZ-01 8 68138393 68138399 TGGAAAG - ARFGEF1 Frame_Shift_Del p.H1312Qfs*11 0.28 TCGA-D7-A6EZ-01 8 77764760 77764760 C T ZFHX4 Missense_Mutation p.P1868L 0.25 possibly_damaging(0.851) TCGA-D7-A6EZ-01 9 111727685 111727685 T C CTNNAL1 Missense_Mutation p.I522V 0.28 tolerated(0.4) benign(0.246) TCGA-D7-A6EZ-01 9 112963431 112963431 G A C9orf152 Missense_Mutation p.P173S 0.28 tolerated(0.3) benign(0.148) TCGA-D7-A6EZ-01 9 125391331 125391331 C T OR1B1 Missense_Mutation p.V162M 0.17 deleterious(0) possibly_damaging(0.459) TCGA-D7-A6EZ-01 9 125659751 125659751 G A RC3H2 Missense_Mutation p.S13F 0.26 tolerated(0.19) probably_damaging(0.974) TCGA-D7-A6EZ-01 9 129594785 129594785 T C ZBTB43 5'UTR 0.16 TCGA-D7-A6EZ-01 9 131380016 131380016 G C SPTAN1 Missense_Mutation p.A1819P 0.44 deleterious(0.05) possibly_damaging(0.867) TCGA-D7-A6EZ-01 9 135073526 135073526 G C NTNG2 Missense_Mutation p.K129N 0.43 deleterious(0) probably_damaging(1) TCGA-D7-A6EZ-01 9 135554539 135554539 A G GTF3C4 Silent p.Q511Q 0.25 TCGA-D7-A6EZ-01 9 139305141 139305141 G C PMPCA Silent p.A7A 0.16 TCGA-D7-A6EZ-01 9 140100297 140100297 G C NDOR1 Missense_Mutation p.R23T 0.26 deleterious(0) probably_damaging(0.994) TCGA-D7-A6EZ-01 9 140508240 140508259 CCTCCTTGGTGGGTCCCCAC - ARRDC1 Intron 0.21 TCGA-D7-A6EZ-01 9 2161782 2161782 G A SMARCA2 Missense_Mutation p.D1360N 0.28 possibly_damaging(0.539) TCGA-D7-A6EZ-01 9 32487519 32487519 A G DDX58 Missense_Mutation p.V442A 0.33 deleterious(0.03) probably_damaging(0.997) TCGA-D7-A6EZ-01 9 33221060 33221060 G A SPINK4 Silent p.S28S 0.32 TCGA-D7-A6EZ-01 9 33798518 33798518 T G PRSS3 Silent p.A220A 0.40 TCGA-D7-A6EZ-01 9 6012549 6012549 G A RANBP6 Missense_Mutation p.T1020I 0.25 tolerated(0.22) benign(0.013) TCGA-D7-A6EZ-01 9 94487112 94487112 T C ROR2 Missense_Mutation p.Y555C 0.15 deleterious(0) probably_damaging(0.994) TCGA-D7-A6EZ-01 X 142717760 142717776 TGCTATTGCCATTGACG - SLITRK4 Frame_Shift_Del p.V384Qfs*10 0.11 TCGA-D7-A6EZ-01 X 153591144 153591144 C G FLNA Silent p.V763V 0.84 TCGA-D7-A6EZ-01 X 153706667 153706667 C G LAGE3 Missense_Mutation p.R91T 0.76 tolerated(0.46) benign(0.295) TCGA-D7-A6EZ-01 X 8768144 8768144 G A FAM9A Silent p.A23A 0.50 TCGA-D7-A6F0-01 10 115970681 115970681 G T TDRD1 Missense_Mutation p.D539Y 0.80 deleterious(0.01) probably_damaging(0.996) TCGA-D7-A6F0-01 10 124352022 124352022 G C DMBT1 Missense_Mutation p.G804A 0.72 deleterious(0.01) unknown(0) TCGA-D7-A6F0-01 10 129904032 129904032 C A MKI67 Missense_Mutation p.K2024N 0.19 tolerated(0.21) possibly_damaging(0.614) TCGA-D7-A6F0-01 10 16794990 16794990 C G RSU1 Missense_Mutation p.R137P 0.14 deleterious(0) probably_damaging(0.985) TCGA-D7-A6F0-01 10 69666567 69666567 C G SIRT1 Missense_Mutation p.F321L 0.06 deleterious(0.01) probably_damaging(0.944) TCGA-D7-A6F0-01 10 7409728 7409728 G A SFMBT2 Missense_Mutation p.R107C 0.37 deleterious(0) probably_damaging(0.999) TCGA-D7-A6F0-01 10 76854363 76854363 A C DUSP13 3'Flank 0.23 TCGA-D7-A6F0-01 11 100141944 100141944 C A CNTN5 Missense_Mutation p.P762Q 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-D7-A6F0-01 11 100221602 100221602 G A CNTN5 Splice_Site p.X1067_splice 0.10 TCGA-D7-A6F0-01 11 100909916 100909916 T G PGR Missense_Mutation p.E911D 0.52 deleterious(0) possibly_damaging(0.898) TCGA-D7-A6F0-01 11 111420376 111420376 C T LAYN Silent p.S147S 0.22 TCGA-D7-A6F0-01 11 122680515 122680515 T G UBASH3B Missense_Mutation p.L624R 0.13 deleterious(0) probably_damaging(0.998) TCGA-D7-A6F0-01 11 558632 558632 G A C11orf35 Missense_Mutation p.A98V 0.11 tolerated(0.06) benign(0.055) TCGA-D7-A6F0-01 11 57235419 57235419 G A RTN4RL2 Silent p.E123E 0.07 TCGA-D7-A6F0-01 11 6245199 6245199 C T FAM160A2 Missense_Mutation p.E140K 0.79 deleterious(0) benign(0.057) TCGA-D7-A6F0-01 11 66052118 66052118 A C YIF1A Missense_Mutation p.L291R 0.10 deleterious(0) probably_damaging(0.993) TCGA-D7-A6F0-01 11 67938702 67938702 A C SUV420H1 Missense_Mutation p.C279W 0.58 deleterious(0) possibly_damaging(0.877) TCGA-D7-A6F0-01 11 7064214 7064214 G A NLRP14 Silent p.L319L 0.34 TCGA-D7-A6F0-01 11 92614004 92614004 G C FAT3 Missense_Mutation p.G4079R 0.15 probably_damaging(0.994) TCGA-D7-A6F0-01 12 10588443 10588443 G C KLRC2 Missense_Mutation p.P48R 0.38 deleterious(0) benign(0.009) TCGA-D7-A6F0-01 12 112915738 112915738 G A PTPN11 Silent p.T337T 0.27 TCGA-D7-A6F0-01 12 122685460 122685460 T G LRRC43 Silent p.S596S 0.09 TCGA-D7-A6F0-01 12 123186811 123186811 G A HCAR2 Silent p.G340G 0.27 TCGA-D7-A6F0-01 12 124832724 124832724 G A NCOR2 Silent p.I1327I 0.28 TCGA-D7-A6F0-01 12 126138772 126138772 A G TMEM132B Missense_Mutation p.N918S 0.31 deleterious(0) probably_damaging(0.998) TCGA-D7-A6F0-01 12 12940610 12940610 C T APOLD1 3'UTR 0.10 TCGA-D7-A6F0-01 12 131490569 131490569 C A GPR133 Missense_Mutation p.N436K 0.05 tolerated(1) benign(0.005) TCGA-D7-A6F0-01 12 21998761 21998761 C T ABCC9 Missense_Mutation p.E958K 0.15 tolerated(0.29) benign(0.211) TCGA-D7-A6F0-01 12 50043301 50043301 C T FMNL3 Silent p.A752A 0.52 TCGA-D7-A6F0-01 12 7249415 7249419 GCAGC - C1RL Frame_Shift_Del p.L345Afs*17 0.11 TCGA-D7-A6F0-01 12 85531653 85531653 G A LRRIQ1 Missense_Mutation p.R1412Q 0.39 deleterious(0.01) probably_damaging(1) TCGA-D7-A6F0-01 13 113898739 113898739 C T CUL4A Missense_Mutation p.S415L 0.17 tolerated(0.1) benign(0.176) TCGA-D7-A6F0-01 13 30423712 30423715 AAAC - UBL3 5'UTR 0.27 TCGA-D7-A6F0-01 13 46924338 46924338 C A KIAA0226L Silent p.L493L 0.18 TCGA-D7-A6F0-01 13 80911385 80911385 C T SPRY2 Silent p.V152V 0.26 TCGA-D7-A6F0-01 14 102452723 102452723 G A DYNC1H1 Missense_Mutation p.E721K 0.20 benign(0.096) TCGA-D7-A6F0-01 14 24785118 24785118 G C LTB4R Silent p.L87L 0.26 TCGA-D7-A6F0-01 14 44976204 44976204 C T FSCB 5'UTR 0.72 TCGA-D7-A6F0-01 14 92174523 92174523 A G CATSPERB Missense_Mutation p.I143T 0.71 tolerated(0.18) probably_damaging(0.919) TCGA-D7-A6F0-01 15 23890002 23890002 G T MAGEL2 Missense_Mutation p.A360E 0.19 tolerated(0.06) benign(0.003) TCGA-D7-A6F0-01 15 45470482 45470482 G A SHF Missense_Mutation p.A109V 0.50 deleterious(0) probably_damaging(0.972) TCGA-D7-A6F0-01 15 72118997 72118997 C T MYO9A Missense_Mutation p.R2524H 0.41 tolerated_low_confidence(0.2) benign(0.002) TCGA-D7-A6F0-01 16 24582621 24582621 G T RBBP6 Nonsense_Mutation p.E1412* 0.15 TCGA-D7-A6F0-01 16 3063442 3063442 C T CLDN9 Silent p.L27L 0.30 TCGA-D7-A6F0-01 16 31368016 31368016 A G ITGAX Missense_Mutation p.S72G 0.25 tolerated(0.24) benign(0) TCGA-D7-A6F0-01 16 4715142 4715142 C T MGRN1 Missense_Mutation p.A223V 0.16 tolerated(0.52) probably_damaging(0.999) TCGA-D7-A6F0-01 16 56385346 56385346 G A GNAO1 3'Flank 0.30 TCGA-D7-A6F0-01 16 78062022 78062022 A T CLEC3A Missense_Mutation p.K54M 0.13 deleterious(0.02) benign(0.294) TCGA-D7-A6F0-01 17 2202240 2202240 G A SMG6 Missense_Mutation p.R603C 0.12 deleterious(0.01) possibly_damaging(0.556) TCGA-D7-A6F0-01 17 37814753 37814753 C A STARD3 Silent p.P175P 0.09 TCGA-D7-A6F0-01 17 42635638 42635638 G A FZD2 Silent p.T194T 0.17 TCGA-D7-A6F0-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.81 deleterious(0) probably_damaging(0.998) TCGA-D7-A6F0-01 17 78176190 78176190 C A CARD14 Silent p.A730A 0.05 TCGA-D7-A6F0-01 18 30321968 30321968 G C KLHL14 Missense_Mutation p.P331R 0.23 tolerated(0.1) possibly_damaging(0.675) TCGA-D7-A6F0-01 18 44560458 44560458 C T TCEB3B Missense_Mutation p.R393Q 0.71 tolerated(0.91) benign(0) TCGA-D7-A6F0-01 18 55398944 55398944 T G ATP8B1 Missense_Mutation p.E32D 0.30 tolerated_low_confidence(0.06) probably_damaging(0.996) TCGA-D7-A6F0-01 19 1113620 1113620 T G SBNO2 Missense_Mutation p.K721Q 0.53 tolerated(0.08) benign(0.059) TCGA-D7-A6F0-01 19 18254599 18254599 C T MAST3 Missense_Mutation p.S760F 0.19 deleterious_low_confidence(0.04) possibly_damaging(0.61) TCGA-D7-A6F0-01 19 30164944 30164944 C T PLEKHF1 Silent p.S66S 0.40 TCGA-D7-A6F0-01 19 38573567 38573567 C T SIPA1L3 Silent p.S454S 0.17 TCGA-D7-A6F0-01 19 4055065 4055065 T C ZBTB7A Missense_Mutation p.S56G 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-D7-A6F0-01 19 51455845 51455845 G A KLK5 Silent p.V23V 0.44 TCGA-D7-A6F0-01 19 57327684 57327684 C T PEG3 Missense_Mutation p.R709Q 0.15 tolerated(0.2) benign(0.021) TCGA-D7-A6F0-01 19 9525139 9525139 T G ZNF266 Missense_Mutation p.K154N 0.17 deleterious(0.03) probably_damaging(0.945) TCGA-D7-A6F0-01 1 152286983 152286983 T C FLG Missense_Mutation p.S127G 0.49 benign(0.028) TCGA-D7-A6F0-01 1 159276003 159276003 A G FCER1A Missense_Mutation p.E186G 0.14 tolerated(0.15) benign(0.142) TCGA-D7-A6F0-01 1 175066621 175066621 C A TNN Missense_Mutation p.P553T 0.10 tolerated(0.08) possibly_damaging(0.525) TCGA-D7-A6F0-01 1 179364294 179364294 A G AXDND1 Missense_Mutation p.K356E 0.13 tolerated(0.75) benign(0.059) TCGA-D7-A6F0-01 1 207314544 207314544 A C C4BPA Missense_Mutation p.K456T 0.13 tolerated(0.22) benign(0.032) TCGA-D7-A6F0-01 1 211093204 211093204 G A KCNH1 Missense_Mutation p.R414C 0.65 tolerated(0.17) possibly_damaging(0.773) TCGA-D7-A6F0-01 1 212538488 212538488 C T TMEM206 3'UTR 0.19 TCGA-D7-A6F0-01 1 216138742 216138742 T G USH2A Missense_Mutation p.H2346P 0.13 benign(0.162) TCGA-D7-A6F0-01 1 222801452 222801452 C T MIA3 Missense_Mutation p.T297I 0.10 deleterious(0) probably_damaging(0.998) TCGA-D7-A6F0-01 1 232650859 232650859 A G SIPA1L2 Missense_Mutation p.V76A 0.09 deleterious(0) probably_damaging(0.992) TCGA-D7-A6F0-01 1 233190032 233190032 G A PCNXL2 Nonsense_Mutation p.R1445* 0.13 TCGA-D7-A6F0-01 1 248005091 248005091 G T OR11L1 Nonsense_Mutation p.C36* 0.11 TCGA-D7-A6F0-01 1 34090806 34090806 C T CSMD2 Missense_Mutation p.R1742H 0.75 deleterious(0) probably_damaging(0.992) TCGA-D7-A6F0-01 1 6189065 6189065 C T CHD5 Missense_Mutation p.R1151Q 0.11 deleterious(0.03) possibly_damaging(0.49) TCGA-D7-A6F0-01 1 66458721 66458721 A G PDE4B Intron 0.16 TCGA-D7-A6F0-01 1 95330395 95330395 C A SLC44A3 Silent p.I445I 0.59 TCGA-D7-A6F0-01 20 33588304 33588304 C T MYH7B Missense_Mutation p.R1706W 0.09 possibly_damaging(0.646) TCGA-D7-A6F0-01 20 40747103 40747103 C T PTPRT Missense_Mutation p.M974I 0.29 deleterious(0) probably_damaging(0.986) TCGA-D7-A6F0-01 20 420910 420910 C T TBC1D20 Silent p.P250P 0.19 TCGA-D7-A6F0-01 20 61488983 61488983 C T TCFL5 Silent p.A334A 0.22 TCGA-D7-A6F0-01 21 10933909 10933909 C T TPTE Missense_Mutation p.E324K 0.18 tolerated(0.29) benign(0.085) TCGA-D7-A6F0-01 22 44287076 44287076 G A PNPLA5 Nonsense_Mutation p.Q98* 0.09 TCGA-D7-A6F0-01 22 44966444 44966444 G A LINC00207 RNA 0.09 TCGA-D7-A6F0-01 22 46704833 46704833 C G GTSE1 Missense_Mutation p.A252G 0.71 deleterious(0) benign(0.012) TCGA-D7-A6F0-01 2 11780553 11780553 C G GREB1 Silent p.L1941L 0.15 TCGA-D7-A6F0-01 2 1653317 1653317 G A PXDN Silent p.D745D 0.47 TCGA-D7-A6F0-01 2 170175292 170175292 G A LRP2 Missense_Mutation p.S97L 0.32 probably_damaging(0.954) TCGA-D7-A6F0-01 2 182780324 182780324 G T SSFA2 Nonsense_Mutation p.E653* 0.32 TCGA-D7-A6F0-01 2 185802238 185802238 T G ZNF804A Missense_Mutation p.N705K 0.10 tolerated(0.94) benign(0.14) TCGA-D7-A6F0-01 2 189599304 189599304 G A DIRC1 3'UTR 0.14 TCGA-D7-A6F0-01 2 189599305 189599305 G A DIRC1 3'UTR 0.13 TCGA-D7-A6F0-01 2 33749572 33749572 G A RASGRP3 Missense_Mutation p.R255H 0.58 deleterious(0) probably_damaging(0.998) TCGA-D7-A6F0-01 2 44100980 44100980 G A ABCG8 Silent p.A422A 0.35 TCGA-D7-A6F0-01 2 50765564 50765564 C T NRXN1 Missense_Mutation p.R697Q 0.33 tolerated(0.11) possibly_damaging(0.592) TCGA-D7-A6F0-01 2 74651071 74651071 C T WDR54 Missense_Mutation p.P166S 0.09 tolerated(0.26) benign(0.033) TCGA-D7-A6F0-01 3 164733820 164733820 T G SI Missense_Mutation p.T1270P 0.07 deleterious(0) probably_damaging(0.997) TCGA-D7-A6F0-01 3 178984599 178984599 C T KCNMB3 5'UTR 0.69 TCGA-D7-A6F0-01 3 27243971 27243971 G A NEK10 Missense_Mutation p.A723V 0.29 tolerated(0.18) benign(0.019) TCGA-D7-A6F0-01 3 54930710 54930710 G A CACNA2D3 Intron 0.14 TCGA-D7-A6F0-01 4 103189107 103189107 C T SLC39A8 Missense_Mutation p.A324T 0.45 deleterious(0) probably_damaging(1) TCGA-D7-A6F0-01 4 113435863 113435863 C T NEUROG2 Missense_Mutation p.D257N 0.31 deleterious_low_confidence(0) benign(0.184) TCGA-D7-A6F0-01 4 118975750 118975750 G C NDST3 Missense_Mutation p.A229P 0.17 deleterious(0) benign(0.17) TCGA-D7-A6F0-01 4 125591335 125591335 C T ANKRD50 Missense_Mutation p.E1033K 0.12 deleterious(0.02) possibly_damaging(0.601) TCGA-D7-A6F0-01 4 183673128 183673128 G A TENM3 Missense_Mutation p.E1269K 0.52 deleterious(0.03) benign(0.008) TCGA-D7-A6F0-01 4 20620432 20620432 A C SLIT2 Missense_Mutation p.K1464Q 0.19 tolerated(0.51) benign(0.054) TCGA-D7-A6F0-01 4 5966823 5966823 T C C4orf50 Silent p.S643S 0.65 TCGA-D7-A6F0-01 4 70823443 70823443 C A CSN2 Missense_Mutation p.G75V 0.20 tolerated(0.1) benign(0.016) TCGA-D7-A6F0-01 4 71888182 71888182 C G DCK Silent p.L102L 0.62 TCGA-D7-A6F0-01 4 83411301 83411301 G C TMEM150C Missense_Mutation p.L152V 0.23 tolerated(0.21) benign(0.253) TCGA-D7-A6F0-01 4 960585 960585 C T DGKQ Silent p.E439E 0.83 TCGA-D7-A6F0-01 5 102526614 102526614 C A PPIP5K2 Missense_Mutation p.Q1121K 0.21 deleterious_low_confidence(0.03) possibly_damaging(0.557) TCGA-D7-A6F0-01 5 137762666 137762666 C A KDM3B Silent p.R1472R 0.06 TCGA-D7-A6F0-01 5 2748625 2748625 G A IRX2 Silent p.N399N 0.16 TCGA-D7-A6F0-01 5 52096552 52096552 C G PELO Silent p.R108R 0.22 TCGA-D7-A6F0-01 6 101127565 101127565 C - ASCC3 Frame_Shift_Del p.A739Qfs*55 0.33 TCGA-D7-A6F0-01 6 105771632 105771632 G T PREP Missense_Mutation p.H409N 0.14 tolerated(0.07) benign(0.112) TCGA-D7-A6F0-01 6 144876012 144876012 C A UTRN Missense_Mutation p.Q2373K 0.11 tolerated(0.09) probably_damaging(0.993) TCGA-D7-A6F0-01 6 150052776 150052776 G A NUP43 Missense_Mutation p.P296S 0.41 tolerated(1) benign(0) TCGA-D7-A6F0-01 6 25762200 25762200 G A SLC17A4 Missense_Mutation p.G4R 0.07 tolerated(0.53) benign(0.001) TCGA-D7-A6F0-01 6 30587356 30587356 C A MRPS18B Silent p.P55P 0.13 TCGA-D7-A6F0-01 6 44253954 44253954 G A TCTE1 Missense_Mutation p.P198L 0.17 tolerated(0.06) possibly_damaging(0.521) TCGA-D7-A6F0-01 6 55942347 55942347 G A COL21A1 Nonsense_Mutation p.R613* 0.40 TCGA-D7-A6F0-01 6 62611216 62611216 C A KHDRBS2 Nonsense_Mutation p.E182* 0.15 TCGA-D7-A6F0-01 6 72596855 72596855 G A RIMS1 Silent p.Q43Q 0.31 TCGA-D7-A6F0-01 7 100087129 100087129 C T NYAP1 Silent p.T595T 0.11 TCGA-D7-A6F0-01 7 127014290 127014290 T C ZNF800 Missense_Mutation p.K367R 0.46 tolerated(0.2) benign(0.026) TCGA-D7-A6F0-01 7 150714316 150714316 G A ATG9B Missense_Mutation p.A699V 0.10 deleterious(0) probably_damaging(0.999) TCGA-D7-A6F0-01 7 15666503 15666503 T A MEOX2 Missense_Mutation p.K186N 0.72 deleterious(0) probably_damaging(0.987) TCGA-D7-A6F0-01 7 21818680 21818680 A C DNAH11 Missense_Mutation p.K3154N 0.44 probably_damaging(0.945) TCGA-D7-A6F0-01 7 29963456 29963456 G C SCRN1 3'Flank 0.13 TCGA-D7-A6F0-01 7 38433745 38433745 C T AMPH Missense_Mutation p.E490K 0.14 tolerated(0.26) benign(0.004) TCGA-D7-A6F0-01 7 42005871 42005871 C T GLI3 Missense_Mutation p.A934T 0.56 deleterious(0) probably_damaging(0.999) TCGA-D7-A6F0-01 7 751114 751114 T G PRKAR1B Missense_Mutation p.E10A 0.19 tolerated(0.17) benign(0.042) TCGA-D7-A6F0-01 7 76908083 76908083 C T CCDC146 Silent p.N485N 0.35 TCGA-D7-A6F0-01 7 97498323 97498323 C T ASNS Missense_Mutation p.R49Q 0.46 deleterious(0.04) possibly_damaging(0.737) TCGA-D7-A6F0-01 8 114186069 114186069 C G CSMD3 Silent p.G197G 0.65 TCGA-D7-A6F0-01 8 142486186 142486186 T C MROH5 Intron 0.17 TCGA-D7-A6F0-01 8 144940315 144940315 G A EPPK1 Silent p.D2369D 0.03 TCGA-D7-A6F0-01 8 145722662 145722662 C T PPP1R16A Missense_Mutation p.R29W 0.53 deleterious(0) probably_damaging(1) TCGA-D7-A6F0-01 8 2044181 2044181 G A MYOM2 Silent p.S740S 0.62 TCGA-D7-A6F0-01 8 25747377 25747377 C A EBF2 Missense_Mutation p.L214F 0.12 deleterious(0) probably_damaging(0.979) TCGA-D7-A6F0-01 8 39550160 39550160 A T ADAM18 Silent p.G621G 0.62 TCGA-D7-A6F0-01 8 67589988 67589988 C - C8orf44 Frame_Shift_Del p.I17Ffs*28 0.16 TCGA-D7-A6F0-01 8 74858991 74858991 C T TCEB1 Silent p.S71S 0.15 TCGA-D7-A6F0-01 9 134385736 134385736 G C POMT1 Missense_Mutation p.L285F 0.18 tolerated(0.15) probably_damaging(1) TCGA-D7-A6F0-01 9 140147643 140147643 C T C9orf173 Missense_Mutation p.P297S 0.24 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-D7-A6F0-01 X 105451265 105451265 C G MUM1L1 Missense_Mutation p.Q614E 0.13 deleterious(0) probably_damaging(0.995) TCGA-D7-A6F0-01 X 107381175 107381175 G A ATG4A Missense_Mutation p.R230H 0.22 deleterious(0) probably_damaging(1) TCGA-D7-A6F0-01 X 123020262 123020262 C T XIAP Silent p.F250F 0.32 TCGA-D7-A6F0-01 X 135431440 135431440 C G GPR112 Missense_Mutation p.Q1859E 0.18 deleterious(0.05) benign(0.009) TCGA-D7-A6F0-01 X 149639573 149639573 G A MAMLD1 Silent p.P551P 0.27 TCGA-D7-A6F0-01 X 152686486 152686486 C G ZFP92 Missense_Mutation p.F217L 0.41 deleterious(0) probably_damaging(0.995) TCGA-D7-A6F0-01 X 153284189 153284189 G A IRAK1 Missense_Mutation p.P197L 0.37 deleterious(0.03) benign(0.028) TCGA-D7-A6F0-01 X 16871811 16871811 A C RBBP7 Missense_Mutation p.L295R 0.43 deleterious(0) possibly_damaging(0.476) TCGA-D7-A6F0-01 X 30237221 30237221 G A MAGEB2 Missense_Mutation p.G175D 0.26 tolerated(0.7) probably_damaging(0.961) TCGA-D7-A6F0-01 X 39922090 39922090 C G BCOR Missense_Mutation p.R1361T 0.20 deleterious(0) probably_damaging(0.992) TCGA-D7-A6F0-01 X 79991559 79991559 C A BRWD3 Missense_Mutation p.R281I 0.16 deleterious(0) possibly_damaging(0.751) TCGA-D7-A6F2-01 10 121563784 121563784 G A INPP5F Missense_Mutation p.V406I 0.54 tolerated(0.09) possibly_damaging(0.823) TCGA-D7-A6F2-01 10 134015484 134015484 C T DPYSL4 Missense_Mutation p.A382V 0.22 deleterious(0) possibly_damaging(0.878) TCGA-D7-A6F2-01 10 50740920 50740920 T C ERCC6-PGBD3 Missense_Mutation p.I31V 0.38 tolerated_low_confidence(0.59) benign(0.043) TCGA-D7-A6F2-01 10 50740946 50740946 G T ERCC6-PGBD3 Missense_Mutation p.P22H 0.45 tolerated_low_confidence(0.36) benign(0.024) TCGA-D7-A6F2-01 10 72520524 72520524 C T ADAMTS14 Missense_Mutation p.T1199M 0.57 tolerated_low_confidence(0.18) benign(0.003) TCGA-D7-A6F2-01 11 2985109 2985109 T G NAP1L4 Intron 0.08 TCGA-D7-A6F2-01 11 48171704 48171704 A G PTPRJ Missense_Mutation p.D1036G 0.19 deleterious(0) probably_damaging(1) TCGA-D7-A6F2-01 11 57116108 57116108 A C P2RX3 Missense_Mutation p.M165L 0.39 tolerated(0.93) possibly_damaging(0.824) TCGA-D7-A6F2-01 11 57116109 57116109 T A P2RX3 Missense_Mutation p.M165K 0.38 deleterious(0) probably_damaging(0.969) TCGA-D7-A6F2-01 11 57958184 57958184 G A OR9Q2 Silent p.S74S 0.35 TCGA-D7-A6F2-01 11 6190927 6190927 G A OR52B2 Silent p.I210I 0.38 TCGA-D7-A6F2-01 11 61977934 61977934 C T SCGB2A1 Silent p.S35S 0.30 TCGA-D7-A6F2-01 12 102142879 102142879 C G GNPTAB Missense_Mutation p.Q1231H 0.18 deleterious(0) probably_damaging(0.999) TCGA-D7-A6F2-01 12 110252435 110252435 C T TRPV4 Missense_Mutation p.R56H 0.09 deleterious_low_confidence(0.03) possibly_damaging(0.508) TCGA-D7-A6F2-01 12 112600926 112600926 C A HECTD4 Missense_Mutation p.C4201F 0.12 probably_damaging(0.981) TCGA-D7-A6F2-01 13 28636174 28636174 C T FLT3 Silent p.A66A 0.10 TCGA-D7-A6F2-01 14 104641544 104641544 G A KIF26A Missense_Mutation p.D807N 0.48 deleterious(0) probably_damaging(0.997) TCGA-D7-A6F2-01 14 53245165 53245165 G T GNPNAT1 Missense_Mutation p.T140N 0.42 deleterious(0) possibly_damaging(0.86) TCGA-D7-A6F2-01 14 55852660 55852660 C G ATG14 Missense_Mutation p.E188D 0.05 tolerated(0.09) benign(0.003) TCGA-D7-A6F2-01 14 66209023 66209023 A T FUT8 Missense_Mutation p.K541N 0.46 deleterious(0) probably_damaging(0.998) TCGA-D7-A6F2-01 14 77722964 77722964 G A TMEM63C Silent p.P772P 0.33 TCGA-D7-A6F2-01 15 25349758 25349758 C T SNORD116-30 5'Flank 0.26 TCGA-D7-A6F2-01 15 25449335 25449335 G T SNORD115-20 5'Flank 0.35 TCGA-D7-A6F2-01 15 49149968 49149968 T C SHC4 Missense_Mutation p.I331V 0.07 deleterious(0.03) probably_damaging(0.97) TCGA-D7-A6F2-01 15 69733318 69733318 T G KIF23 Missense_Mutation p.I760S 0.08 tolerated(0.36) benign(0.004) TCGA-D7-A6F2-01 16 30727758 30727758 C T SRCAP Silent p.T925T 0.28 TCGA-D7-A6F2-01 16 4935409 4935409 G A PPL Missense_Mutation p.L1083F 0.05 tolerated(0.22) benign(0.418) TCGA-D7-A6F2-01 16 89258137 89258137 G A CDH15 Missense_Mutation p.A484T 0.38 tolerated(0.28) benign(0.006) TCGA-D7-A6F2-01 17 10431077 10431077 G T MYH2 Missense_Mutation p.Q1287K 0.18 deleterious(0.03) benign(0.347) TCGA-D7-A6F2-01 17 12893352 12893352 T C ARHGAP44 Missense_Mutation p.L774P 0.39 deleterious_low_confidence(0) benign(0.36) TCGA-D7-A6F2-01 17 1840455 1840455 G A RTN4RL1 Missense_Mutation p.R221C 0.11 deleterious(0.01) possibly_damaging(0.841) TCGA-D7-A6F2-01 17 66033315 66033315 G C KPNA2 Missense_Mutation p.D23H 0.21 deleterious(0.02) probably_damaging(0.991) TCGA-D7-A6F2-01 17 73566076 73566076 G A LLGL2 Silent p.A538A 0.11 TCGA-D7-A6F2-01 17 7577570 7577570 C T TP53 Missense_Mutation p.M237I 0.71 deleterious(0) probably_damaging(0.997) TCGA-D7-A6F2-01 19 16625353 16625353 T C C19orf44 Missense_Mutation p.L594P 0.55 deleterious(0) probably_damaging(1) TCGA-D7-A6F2-01 19 44503263 44503263 C A ZNF155 3'Flank 0.70 TCGA-D7-A6F2-01 19 51410009 51410009 G C KLK4 3'UTR 0.75 TCGA-D7-A6F2-01 19 8527448 8527448 G A HNRNPM Missense_Mutation p.A107T 0.35 deleterious(0.01) probably_damaging(0.909) TCGA-D7-A6F2-01 1 152192336 152192336 C T HRNR Missense_Mutation p.R590H 0.16 unknown(0) TCGA-D7-A6F2-01 1 175063242 175063242 G T TNN Missense_Mutation p.D481Y 0.13 deleterious(0) probably_damaging(0.981) TCGA-D7-A6F2-01 1 205312625 205312625 G A KLHDC8A Silent p.I36I 0.15 TCGA-D7-A6F2-01 1 206904062 206904062 G T MAPKAPK2 Missense_Mutation p.D241Y 0.43 deleterious(0) probably_damaging(0.999) TCGA-D7-A6F2-01 1 231472645 231472645 C T EXOC8 Missense_Mutation p.A283T 0.43 tolerated(0.21) benign(0.042) TCGA-D7-A6F2-01 1 235292025 235292025 C G TOMM20 Silent p.V2V 0.23 TCGA-D7-A6F2-01 1 235505726 235505726 G C GGPS1 Missense_Mutation p.G181A 0.16 tolerated(0.06) probably_damaging(0.956) TCGA-D7-A6F2-01 1 3329021 3329021 G A PRDM16 Missense_Mutation p.E754K 0.34 deleterious(0) probably_damaging(0.999) TCGA-D7-A6F2-01 1 34666589 34666589 C T C1orf94 Missense_Mutation p.P409L 0.45 tolerated_low_confidence(1) benign(0.001) TCGA-D7-A6F2-01 20 55206867 55206867 G A TFAP2C Missense_Mutation p.D181N 0.12 tolerated(0.12) benign(0.132) TCGA-D7-A6F2-01 20 60907463 60907463 C T LAMA5 Missense_Mutation p.V1173M 0.20 probably_damaging(0.963) TCGA-D7-A6F2-01 21 43230670 43230670 G A PRDM15 Missense_Mutation p.T1197M 0.18 deleterious(0.04) benign(0.327) TCGA-D7-A6F2-01 22 27003851 27003851 A C CRYBB1 Splice_Site p.X144_splice 0.35 TCGA-D7-A6F2-01 22 30415963 30415963 T A MTMR3 Missense_Mutation p.L772H 0.61 tolerated_low_confidence(0.55) benign(0) TCGA-D7-A6F2-01 2 142238065 142238065 G T LRP1B Missense_Mutation p.H81Q 0.10 possibly_damaging(0.537) TCGA-D7-A6F2-01 2 1653354 1653354 G A PXDN Missense_Mutation p.S733L 0.08 deleterious(0.01) probably_damaging(0.952) TCGA-D7-A6F2-01 2 170012816 170012816 C T LRP2 Missense_Mutation p.S4040N 0.51 benign(0.41) TCGA-D7-A6F2-01 2 179482970 179482970 C G TTN Missense_Mutation p.G15739R 0.15 TCGA-D7-A6F2-01 2 241631321 241631321 G A AQP12A 5'UTR 0.17 TCGA-D7-A6F2-01 2 32875255 32875255 C T TTC27 Missense_Mutation p.R199C 0.08 tolerated(0.1) benign(0.081) TCGA-D7-A6F2-01 2 66739353 66739353 G A MEIS1 Missense_Mutation p.R272H 0.10 tolerated(0.14) benign(0.008) TCGA-D7-A6F2-01 3 142455233 142455233 T A TRPC1 Missense_Mutation p.M62K 0.11 deleterious(0.03) possibly_damaging(0.747) TCGA-D7-A6F2-01 3 154145325 154145325 A G GPR149 Missense_Mutation p.V385A 0.14 tolerated(0.26) benign(0.011) TCGA-D7-A6F2-01 3 52940182 52940182 G A SFMBT1 Missense_Mutation p.R803W 0.07 deleterious(0) probably_damaging(0.97) TCGA-D7-A6F2-01 3 9807588 9807588 G A OGG1 Silent p.G348G 0.57 TCGA-D7-A6F2-01 4 13476030 13476030 C A RAB28 Missense_Mutation p.G58V 0.09 deleterious(0) probably_damaging(0.993) TCGA-D7-A6F2-01 4 187524524 187524524 A T FAT1 Missense_Mutation p.V3719E 0.23 benign(0.347) TCGA-D7-A6F2-01 4 985500 985500 G A SLC26A1 5'UTR 0.47 TCGA-D7-A6F2-01 5 140181082 140181082 G A PCDHA3 Silent p.A100A 0.10 TCGA-D7-A6F2-01 5 140725933 140725933 C T PCDHGA3 Missense_Mutation p.T778M 0.23 tolerated_low_confidence(0.11) possibly_damaging(0.458) TCGA-D7-A6F2-01 5 169116316 169116316 C A DOCK2 Missense_Mutation p.N274K 0.25 deleterious(0.01) benign(0.196) TCGA-D7-A6F2-01 5 178139791 178139791 A C ZNF354A Missense_Mutation p.F363C 0.04 deleterious(0) probably_damaging(1) TCGA-D7-A6F2-01 5 71493248 71493248 C T MAP1B Missense_Mutation p.P1356S 0.19 benign(0.01) TCGA-D7-A6F2-01 6 22569994 22569994 G A HDGFL1 Missense_Mutation p.E64K 0.18 deleterious(0) probably_damaging(0.965) TCGA-D7-A6F2-01 6 52992988 52992988 T C GCM1 3'UTR 0.38 TCGA-D7-A6F2-01 6 56469606 56469606 T C DST Intron 0.47 TCGA-D7-A6F2-01 6 75840614 75840614 C T COL12A1 Silent p.L2007L 0.63 TCGA-D7-A6F2-01 7 73183780 73183780 C T CLDN3 Silent p.A200A 0.42 TCGA-D7-A6F2-01 7 94232734 94232734 C T SGCE Silent p.P231P 0.26 TCGA-D7-A6F2-01 8 51664599 51664599 T G SNTG1 Silent p.G441G 0.32 TCGA-D7-A6F2-01 8 75757699 75757699 G A PI15 Missense_Mutation p.R203H 0.12 tolerated(0.4) possibly_damaging(0.537) TCGA-D7-A6F2-01 8 87683290 87683290 A C CNGB3 Missense_Mutation p.N125K 0.03 deleterious(0) possibly_damaging(0.52) TCGA-D7-A6F2-01 9 104238806 104238806 T G TMEM246 Missense_Mutation p.D190A 0.07 deleterious(0) probably_damaging(0.996) TCGA-D7-A6F2-01 9 27455352 27455352 T C MOB3B Missense_Mutation p.D66G 0.45 deleterious(0) probably_damaging(0.993) TCGA-D7-A6F2-01 9 713305 713305 G A KANK1 Missense_Mutation p.E847K 0.38 deleterious(0.01) probably_damaging(0.971) TCGA-D7-A6F2-01 9 80043933 80043933 G A GNA14 Nonsense_Mutation p.Q205* 0.10 TCGA-D7-A6F2-01 9 95418777 95418777 G T IPPK Silent p.V62V 0.06 TCGA-D7-A6F2-01 X 153040183 153040183 C T PLXNB3 Missense_Mutation p.R1308W 0.12 deleterious(0) probably_damaging(0.999) TCGA-D7-A6F2-01 X 154158080 154158080 G A F8 Missense_Mutation p.R1329C 0.18 deleterious(0) possibly_damaging(0.88) TCGA-D7-A6F2-01 X 3235276 3235276 G A MXRA5 Missense_Mutation p.T2149M 0.88 deleterious(0.01) probably_damaging(0.981) TCGA-D7-A6F2-01 X 63411781 63411781 T C AMER1 Silent p.E462E 0.11 TCGA-D7-A6F2-01 X 77912605 77912605 C T ZCCHC5 Missense_Mutation p.R438H 0.73 tolerated(0.34) benign(0.001) TCGA-D7-A747-01 10 107012578 107012578 G T SORCS3 Missense_Mutation p.G1051C 0.09 deleterious(0) probably_damaging(1) TCGA-D7-A747-01 10 17277328 17277328 A C VIM Missense_Mutation p.K390T 0.08 deleterious(0) probably_damaging(0.927) TCGA-D7-A747-01 10 27475541 27475541 T G MASTL 3'UTR 0.21 TCGA-D7-A747-01 10 55582512 55582512 T A PCDH15 Silent p.S1660S 0.05 TCGA-D7-A747-01 10 60558259 60558259 T G BICC1 Missense_Mutation p.S489R 0.06 tolerated(0.21) benign(0.107) TCGA-D7-A747-01 10 7750999 7750999 A C ITIH2 Missense_Mutation p.Q69H 0.07 tolerated(0.07) benign(0.021) TCGA-D7-A747-01 11 110451557 110451557 C G ARHGAP20 Missense_Mutation p.E705Q 0.10 deleterious(0) probably_damaging(0.998) TCGA-D7-A747-01 11 113857585 113857585 A C HTR3A Missense_Mutation p.S357R 0.08 deleterious(0) probably_damaging(1) TCGA-D7-A747-01 11 55578986 55578986 T G OR5L1 Missense_Mutation p.L15R 0.07 deleterious(0) possibly_damaging(0.617) TCGA-D7-A747-01 11 6654182 6654182 C A DCHS1 Missense_Mutation p.R854L 0.06 deleterious(0.01) possibly_damaging(0.9) TCGA-D7-A747-01 11 70331696 70331696 C T SHANK2 Missense_Mutation p.V1569M 0.10 tolerated(0.11) benign(0.002) TCGA-D7-A747-01 11 8414194 8414194 T C STK33 Missense_Mutation p.S470G 0.09 tolerated_low_confidence(0.38) benign(0.001) TCGA-D7-A747-01 12 114823291 114823291 T G TBX5 Silent p.R249R 0.10 TCGA-D7-A747-01 12 12043919 12043919 G A ETV6 Missense_Mutation p.R433H 0.09 tolerated(0.07) benign(0.101) TCGA-D7-A747-01 12 43777720 43777720 C A ADAMTS20 Missense_Mutation p.V1505F 0.11 tolerated(0.45) possibly_damaging(0.562) TCGA-D7-A747-01 12 52981568 52981568 C T KRT72 Missense_Mutation p.R386Q 0.10 tolerated(0.32) benign(0.017) TCGA-D7-A747-01 12 58151953 58151953 G A MARCH9 Silent p.S192S 0.07 TCGA-D7-A747-01 12 64041119 64041119 T A DPY19L2 Silent p.T205T 0.05 TCGA-D7-A747-01 12 66909436 66909436 T G GRIP1 Missense_Mutation p.E229D 0.08 deleterious(0.04) benign(0.038) TCGA-D7-A747-01 13 101833582 101833582 A C NALCN Intron 0.29 TCGA-D7-A747-01 13 115010426 115010426 G C CDC16 Missense_Mutation p.E277Q 0.07 deleterious(0) possibly_damaging(0.789) TCGA-D7-A747-01 13 37679178 37679178 G A CSNK1A1L Silent p.G72G 0.05 TCGA-D7-A747-01 14 100184456 100184456 G A CYP46A1 Missense_Mutation p.V325M 0.10 tolerated(0.13) benign(0.009) TCGA-D7-A747-01 14 33291822 33291822 T G AKAP6 Silent p.T1601T 0.05 TCGA-D7-A747-01 14 91386584 91386584 C T RPS6KA5 Missense_Mutation p.D258N 0.12 tolerated(0.1) benign(0.134) TCGA-D7-A747-01 14 93998915 93998915 T G UNC79 Missense_Mutation p.C194W 0.10 deleterious(0) probably_damaging(0.999) TCGA-D7-A747-01 15 25220656 25220656 A C SNRPN Missense_Mutation p.K52T 0.05 deleterious(0.01) probably_damaging(0.986) TCGA-D7-A747-01 15 25959270 25959270 T C ATP10A Missense_Mutation p.K632R 0.08 tolerated(0.38) benign(0.049) TCGA-D7-A747-01 15 43044335 43044335 C A TTBK2 Nonsense_Mutation p.E1037* 0.12 TCGA-D7-A747-01 15 57815837 57815837 G A CGNL1 Missense_Mutation p.E956K 0.14 tolerated(0.13) possibly_damaging(0.573) TCGA-D7-A747-01 15 76171507 76171507 T C UBE2Q2 Missense_Mutation p.I268T 0.14 deleterious(0) probably_damaging(0.98) TCGA-D7-A747-01 16 23079813 23079813 G A USP31 Missense_Mutation p.R1205C 0.05 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-D7-A747-01 16 30680784 30680784 G C FBRS Missense_Mutation p.A921P 0.06 benign(0.005) TCGA-D7-A747-01 16 33647233 33647233 T G RP11-812E19.9 Missense_Mutation p.N123H 0.07 tolerated_low_confidence(0.16) benign(0.379) TCGA-D7-A747-01 16 5040825 5040825 C T SEC14L5 Missense_Mutation p.R135W 0.18 deleterious(0) probably_damaging(0.94) TCGA-D7-A747-01 17 10304026 10304026 C T MYH8 Missense_Mutation p.R1139H 0.05 deleterious(0) benign(0.262) TCGA-D7-A747-01 17 293164 293164 G A FAM101B Missense_Mutation p.R76C 0.08 deleterious(0) probably_damaging(0.994) TCGA-D7-A747-01 17 51901053 51901053 A C KIF2B Missense_Mutation p.K220T 0.08 deleterious(0.04) probably_damaging(1) TCGA-D7-A747-01 17 51901612 51901612 A G KIF2B Missense_Mutation p.I406M 0.07 tolerated(0.58) benign(0.153) TCGA-D7-A747-01 18 12479738 12479738 C T SPIRE1 Missense_Mutation p.R455K 0.14 tolerated(1) benign(0.001) TCGA-D7-A747-01 18 42643182 42643182 A G SETBP1 Missense_Mutation p.K1437R 0.15 deleterious(0) probably_damaging(0.991) TCGA-D7-A747-01 18 44560209 44560209 G A TCEB3B Missense_Mutation p.P476L 0.08 tolerated(0.17) benign(0) TCGA-D7-A747-01 18 56415075 56415077 CCT - MALT1 3'UTR 0.08 TCGA-D7-A747-01 18 56939727 56939727 G A RAX Missense_Mutation p.R137W 0.10 deleterious(0) probably_damaging(1) TCGA-D7-A747-01 18 58038662 58038662 T G MC4R Missense_Mutation p.Q307H 0.09 tolerated(0.08) probably_damaging(0.986) TCGA-D7-A747-01 18 683258 683258 G A ENOSF1 Silent p.A309A 0.07 TCGA-D7-A747-01 19 10108801 10108801 C T COL5A3 Missense_Mutation p.G379R 0.09 unknown(0) TCGA-D7-A747-01 19 17394354 17394354 G C ANKLE1 Missense_Mutation p.V261L 0.14 tolerated(0.71) benign(0.004) TCGA-D7-A747-01 19 22193627 22193627 A G ZNF208 5'UTR 0.08 TCGA-D7-A747-01 19 2249462 2249462 A G AMH Missense_Mutation p.D44G 0.18 tolerated_low_confidence(0.39) possibly_damaging(0.811) TCGA-D7-A747-01 19 36357076 36357076 C T KIRREL2 Silent p.Y603Y 0.09 TCGA-D7-A747-01 19 44153281 44153281 T - PLAUR Frame_Shift_Del p.S257Afs*4 0.08 TCGA-D7-A747-01 19 44891924 44891924 G A ZNF285 Silent p.N161N 0.10 TCGA-D7-A747-01 19 53959418 53959418 A G ZNF761 RNA 0.12 TCGA-D7-A747-01 1 102302456 102302456 T G OLFM3 Missense_Mutation p.Q65H 0.10 deleterious(0) possibly_damaging(0.77) TCGA-D7-A747-01 1 115138466 115138466 T G DENND2C Missense_Mutation p.K771T 0.16 deleterious(0) possibly_damaging(0.616) TCGA-D7-A747-01 1 27238276 27238276 C - NR0B2 3'UTR 0.12 TCGA-D7-A747-01 1 67147789 67147789 C T SGIP1 Missense_Mutation p.P351L 0.11 tolerated_low_confidence(0.12) possibly_damaging(0.713) TCGA-D7-A747-01 20 3146283 3146283 G A LZTS3 Missense_Mutation p.R395W 0.18 deleterious(0) probably_damaging(0.989) TCGA-D7-A747-01 20 3679902 3679902 C T SIGLEC1 Missense_Mutation p.R578Q 0.22 tolerated(1) benign(0.002) TCGA-D7-A747-01 20 42344712 42344712 C T MYBL2 Silent p.T696T 0.08 TCGA-D7-A747-01 20 44404213 44404213 C G WFDC3 Silent p.L174L 0.07 TCGA-D7-A747-01 21 19653531 19653531 A C TMPRSS15 Missense_Mutation p.L832V 0.11 tolerated(0.24) benign(0.019) TCGA-D7-A747-01 21 19725236 19725236 A C TMPRSS15 Silent p.T385T 0.04 TCGA-D7-A747-01 21 32253376 32253376 C T KRTAP11-1 Silent p.V156V 0.06 TCGA-D7-A747-01 21 34442984 34442984 C T OLIG1 Silent p.P144P 0.07 TCGA-D7-A747-01 2 141079561 141079561 T G LRP1B Missense_Mutation p.N4204T 0.10 benign(0.403) TCGA-D7-A747-01 2 160803190 160803190 T C PLA2R1 Intron 0.12 TCGA-D7-A747-01 2 1664809 1664809 C T PXDN Missense_Mutation p.D561N 0.14 tolerated(0.09) benign(0.378) TCGA-D7-A747-01 2 175301066 175301066 G A GPR155 Silent p.S797S 0.10 TCGA-D7-A747-01 2 186669977 186669977 T G FSIP2 Missense_Mutation p.L5404R 0.17 benign(0.376) TCGA-D7-A747-01 2 1926123 1926123 A C MYT1L Missense_Mutation p.L473R 0.13 tolerated(0.21) benign(0.157) TCGA-D7-A747-01 2 1926933 1926933 T A MYT1L Missense_Mutation p.K203M 0.14 deleterious(0) probably_damaging(1) TCGA-D7-A747-01 2 47612312 47612312 C A EPCAM Missense_Mutation p.S289Y 0.06 tolerated(0.13) possibly_damaging(0.646) TCGA-D7-A747-01 2 5833492 5833492 G A SOX11 Silent p.A213A 0.19 TCGA-D7-A747-01 2 85622746 85622746 C T CAPG Missense_Mutation p.R299Q 0.14 deleterious(0.02) benign(0.011) TCGA-D7-A747-01 2 95519384 95519384 A C ANKRD20A8P RNA 0.15 TCGA-D7-A747-01 3 123419410 123419410 C T MYLK Missense_Mutation p.E969K 0.09 deleterious(0.02) benign(0.003) TCGA-D7-A747-01 3 132244982 132244982 T A DNAJC13 Intron 0.19 TCGA-D7-A747-01 3 153840234 153840234 C T ARHGEF26 Silent p.N151N 0.11 TCGA-D7-A747-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.12 deleterious(0.02) probably_damaging(0.959) TCGA-D7-A747-01 3 33895468 33895468 T G PDCD6IP Missense_Mutation p.F668C 0.05 deleterious(0) probably_damaging(0.992) TCGA-D7-A747-01 3 41277900 41277900 G C CTNNB1 Missense_Mutation p.A622P 0.08 deleterious(0) probably_damaging(0.999) TCGA-D7-A747-01 3 42915801 42915801 G A CYP8B1 3'UTR 0.11 TCGA-D7-A747-01 3 55107819 55107819 A C CACNA2D3 Missense_Mutation p.K1039T 0.11 tolerated(0.09) benign(0.006) TCGA-D7-A747-01 3 62459959 62459959 G A CADPS Silent p.T1122T 0.09 TCGA-D7-A747-01 3 77147475 77147475 G A ROBO2 Silent p.A140A 0.10 TCGA-D7-A747-01 3 93595988 93595988 G A PROS1 Silent p.A564A 0.12 TCGA-D7-A747-01 4 186541294 186541294 G A SORBS2 Missense_Mutation p.P939S 0.09 tolerated(0.27) benign(0.138) TCGA-D7-A747-01 4 71629279 71629279 T G RUFY3 Silent p.T121T 0.08 TCGA-D7-A747-01 4 91230155 91230155 C G CCSER1 Missense_Mutation p.S240R 0.11 deleterious(0) probably_damaging(0.925) TCGA-D7-A747-01 5 1083926 1083926 A G SLC12A7 Missense_Mutation p.Y355H 0.09 deleterious(0) probably_damaging(0.966) TCGA-D7-A747-01 5 134002578 134002578 G T SEC24A Missense_Mutation p.G211W 0.07 tolerated(0.06) probably_damaging(0.936) TCGA-D7-A747-01 5 1880876 1880876 G A IRX4 Missense_Mutation p.P124S 0.05 tolerated(0.09) probably_damaging(0.997) TCGA-D7-A747-01 5 39021167 39021169 GCT CC RICTOR Frame_Shift_Del p.K56Rfs*2 0.12 TCGA-D7-A747-01 5 40972522 40972522 C T C7 Missense_Mutation p.P634S 0.16 deleterious(0.01) probably_damaging(0.958) TCGA-D7-A747-01 5 41058242 41058242 G A MROH2B Missense_Mutation p.R227C 0.27 tolerated(0.17) benign(0) TCGA-D7-A747-01 5 79030540 79030540 A C CMYA5 Missense_Mutation p.E1984D 0.08 probably_damaging(0.935) TCGA-D7-A747-01 5 93077098 93077098 G A POU5F2 Missense_Mutation p.P58S 0.11 tolerated(0.13) possibly_damaging(0.641) TCGA-D7-A747-01 6 152560702 152560702 T G SYNE1 Missense_Mutation p.H6678P 0.08 probably_damaging(0.926) TCGA-D7-A747-01 6 152804233 152804233 A G SYNE1 Missense_Mutation p.L446P 0.09 possibly_damaging(0.474) TCGA-D7-A747-01 6 27777851 27777851 C T HIST1H3H 5'UTR 0.10 TCGA-D7-A747-01 6 35285703 35285703 C G DEF6 Missense_Mutation p.F281L 0.08 deleterious(0.02) probably_damaging(0.949) TCGA-D7-A747-01 6 44250074 44250074 C T TCTE1 Missense_Mutation p.A357T 0.10 deleterious(0.01) probably_damaging(0.998) TCGA-D7-A747-01 6 72889429 72889429 A C RIMS1 Missense_Mutation p.K208T 0.05 deleterious(0.01) probably_damaging(0.996) TCGA-D7-A747-01 7 132192667 132192667 C T PLXNA4 Silent p.E262E 0.07 TCGA-D7-A747-01 7 27669094 27669094 G A HIBADH Missense_Mutation p.S127L 0.13 deleterious(0) probably_damaging(0.94) TCGA-D7-A747-01 7 4901338 4901338 G A PAPOLB Missense_Mutation p.T34M 0.19 tolerated(0.24) possibly_damaging(0.801) TCGA-D7-A747-01 7 81392180 81392180 T A HGF Missense_Mutation p.R33W 0.14 deleterious(0.02) benign(0.353) TCGA-D7-A747-01 7 93518469 93518469 T G TFPI2 Missense_Mutation p.Y113S 0.05 deleterious(0) probably_damaging(0.961) TCGA-D7-A747-01 8 104415465 104415465 T G SLC25A32 Missense_Mutation p.H160P 0.09 tolerated(0.27) benign(0.001) TCGA-D7-A747-01 8 105521191 105521191 T G LRP12 Missense_Mutation p.N83T 0.07 deleterious(0.03) benign(0.076) TCGA-D7-A747-01 8 19362959 19362959 G T CSGALNACT1 Missense_Mutation p.D129E 0.09 tolerated(0.36) benign(0.217) TCGA-D7-A747-01 8 55540239 55540239 A G RP1 Missense_Mutation p.K1266R 0.05 tolerated(0.09) benign(0.075) TCGA-D7-A747-01 8 65527645 65527645 T C CYP7B1 Missense_Mutation p.K332R 0.09 deleterious(0.01) probably_damaging(0.965) TCGA-D7-A747-01 8 71068903 71068903 G A NCOA2 Missense_Mutation p.P566L 0.09 deleterious(0.01) benign(0.256) TCGA-D7-A747-01 8 97172636 97172636 G T GDF6 Missense_Mutation p.H95Q 0.07 deleterious(0) probably_damaging(0.98) TCGA-D7-A747-01 8 97274408 97274408 G A PTDSS1 Missense_Mutation p.S47N 0.07 tolerated(0.09) benign(0.048) TCGA-D7-A747-01 9 117051006 117051006 C T COL27A1 Missense_Mutation p.R1357C 0.13 unknown(0) TCGA-D7-A747-01 9 125582522 125582522 G A PDCL Missense_Mutation p.R250C 0.06 deleterious(0) probably_damaging(0.999) TCGA-D7-A747-01 9 131186478 131186478 G A CERCAM Missense_Mutation p.G163E 0.07 tolerated(0.07) benign(0.005) TCGA-D7-A747-01 9 23731060 23731060 T A ELAVL2 Missense_Mutation p.N98I 0.11 deleterious(0.04) possibly_damaging(0.502) TCGA-D7-A747-01 9 84530576 84530576 A C SPATA31D5P RNA 0.07 TCGA-D7-A747-01 9 98209514 98209514 G A PTCH1 Missense_Mutation p.R1342C 0.09 deleterious_low_confidence(0.02) benign(0.249) TCGA-D7-A747-01 X 10102554 10102554 G - WWC3 Frame_Shift_Del p.R894Qfs*90 0.30 TCGA-D7-A747-01 X 108619317 108619317 T G GUCY2F Missense_Mutation p.D1077A 0.07 tolerated(0.83) benign(0.001) TCGA-D7-A747-01 X 114249030 114249030 T G IL13RA2 Missense_Mutation p.E118D 0.26 tolerated(0.08) benign(0.011) TCGA-D7-A747-01 X 16168546 16168546 T G GRPR Missense_Mutation p.F178V 0.42 deleterious(0.01) probably_damaging(0.936) TCGA-D7-A747-01 X 47444707 47444707 G T TIMP1 Missense_Mutation p.R102L 0.12 deleterious(0.03) possibly_damaging(0.869) TCGA-D7-A747-01 X 48925185 48925185 G T CCDC120 Missense_Mutation p.R477L 0.14 deleterious(0.04) probably_damaging(0.959) TCGA-D7-A747-01 X 77913639 77913639 A C ZCCHC5 Missense_Mutation p.D93E 0.30 tolerated_low_confidence(1) benign(0) TCGA-D7-A748-01 10 116049196 116049196 T G VWA2 Silent p.A690A 0.09 TCGA-D7-A748-01 10 89487153 89487153 T C PAPSS2 Silent p.A331A 0.10 TCGA-D7-A748-01 11 124135668 124135668 G A OR8G5 Missense_Mutation p.V316I 0.07 tolerated(0.51) benign(0.046) TCGA-D7-A748-01 11 4929244 4929244 G C OR51A7 Missense_Mutation p.L215F 0.07 tolerated(0.17) benign(0.021) TCGA-D7-A748-01 11 78277215 78277215 C T NARS2 Missense_Mutation p.R159H 0.07 deleterious(0) probably_damaging(1) TCGA-D7-A748-01 12 103696092 103696092 G A C12orf42 Missense_Mutation p.R293W 0.09 deleterious(0.02) possibly_damaging(0.898) TCGA-D7-A748-01 12 118590080 118590080 C T TAOK3 Silent p.Q829Q 0.08 TCGA-D7-A748-01 12 38712112 38712112 G T ALG10B Missense_Mutation p.G74V 0.07 tolerated(0.22) possibly_damaging(0.893) TCGA-D7-A748-01 12 50356011 50356011 G A AQP5 Missense_Mutation p.A71T 0.10 deleterious(0) probably_damaging(1) TCGA-D7-A748-01 12 85255784 85255784 G T SLC6A15 Missense_Mutation p.A607E 0.06 deleterious(0) probably_damaging(0.968) TCGA-D7-A748-01 14 105360623 105360623 A G CEP170B Missense_Mutation p.I1425V 0.10 tolerated(0.5) benign(0.008) TCGA-D7-A748-01 14 105407443 105407443 G A AHNAK2 Missense_Mutation p.S4782F 0.05 benign(0.355) TCGA-D7-A748-01 15 63880987 63880987 C T USP3 Silent p.G434G 0.06 TCGA-D7-A748-01 16 68846036 68846036 A G CDH1 Splice_Site p.X337_splice 0.24 TCGA-D7-A748-01 17 33521058 33521058 C T SLC35G3 Missense_Mutation p.R90H 0.05 tolerated(0.18) benign(0.031) TCGA-D7-A748-01 17 7468154 7468154 C T SENP3 Nonsense_Mutation p.R310* 0.07 TCGA-D7-A748-01 18 72999597 72999597 G A TSHZ1 Silent p.P700P 0.07 TCGA-D7-A748-01 19 16236288 16236288 G A RAB8A Missense_Mutation p.M85I 0.11 tolerated(0.36) possibly_damaging(0.906) TCGA-D7-A748-01 19 42485918 42485918 G A ATP1A3 Missense_Mutation p.R433C 0.08 deleterious(0) probably_damaging(0.999) TCGA-D7-A748-01 19 42558560 42558560 C A GRIK5 Missense_Mutation p.R323L 0.07 deleterious(0.02) probably_damaging(0.947) TCGA-D7-A748-01 19 7976189 7976189 G A MAP2K7 Missense_Mutation p.D304N 0.09 deleterious(0) probably_damaging(0.991) TCGA-D7-A748-01 1 156268436 156268436 C T VHLL 3'UTR 0.14 TCGA-D7-A748-01 1 16256528 16256528 C T SPEN Nonsense_Mutation p.R1265* 0.04 TCGA-D7-A748-01 1 190195299 190195299 G T BRINP3 Missense_Mutation p.P292T 0.06 deleterious(0) probably_damaging(0.997) TCGA-D7-A748-01 1 234743031 234743031 T C IRF2BP2 Missense_Mutation p.K539R 0.08 tolerated(0.14) possibly_damaging(0.899) TCGA-D7-A748-01 20 10025122 10025122 T G ANKEF1 Silent p.G209G 0.09 TCGA-D7-A748-01 22 18022583 18022583 G A CECR2 Silent p.P896P 0.08 TCGA-D7-A748-01 22 30735202 30735202 G A SF3A1 Missense_Mutation p.R472W 0.05 deleterious(0) probably_damaging(0.995) TCGA-D7-A748-01 2 119750046 119750046 G T MARCO Nonsense_Mutation p.E416* 0.10 TCGA-D7-A748-01 2 173891417 173891417 G A RAPGEF4 Missense_Mutation p.V791M 0.05 tolerated(0.17) possibly_damaging(0.459) TCGA-D7-A748-01 2 25141530 25141530 G A ADCY3 Silent p.A109A 0.05 TCGA-D7-A748-01 3 119462964 119462964 G A MAATS1 Missense_Mutation p.R608Q 0.05 deleterious(0.01) probably_damaging(0.977) TCGA-D7-A748-01 3 12977737 12977737 G A IQSEC1 Missense_Mutation p.A274V 0.10 tolerated(0.3) benign(0.001) TCGA-D7-A748-01 3 196842799 196842799 G T DLG1 Nonsense_Mutation p.S514* 0.10 TCGA-D7-A748-01 3 27173450 27173450 C A NEK10 Missense_Mutation p.R1058I 0.06 deleterious(0) probably_damaging(0.998) TCGA-D7-A748-01 3 69097357 69097357 C T TMF1 Missense_Mutation p.G167S 0.11 tolerated_low_confidence(0.85) benign(0) TCGA-D7-A748-01 4 141583252 141583252 T C TBC1D9 Missense_Mutation p.N533S 0.11 tolerated(0.15) probably_damaging(0.996) TCGA-D7-A748-01 4 46930295 46930295 A C GABRA4 Missense_Mutation p.W538G 0.07 deleterious(0) probably_damaging(0.999) TCGA-D7-A748-01 4 5749976 5749976 G A EVC Silent p.T347T 0.06 TCGA-D7-A748-01 5 140502531 140502531 A C PCDHB4 Missense_Mutation p.E317D 0.05 tolerated(1) benign(0.018) TCGA-D7-A748-01 5 140563345 140563345 T A PCDHB16 Missense_Mutation p.V404E 0.07 tolerated_low_confidence(0.11) benign(0.052) TCGA-D7-A748-01 5 140595562 140595562 G A PCDHB13 Missense_Mutation p.E623K 0.08 deleterious_low_confidence(0) probably_damaging(0.964) TCGA-D7-A748-01 5 141353170 141353170 G A RNF14 Missense_Mutation p.R6Q 0.05 tolerated(0.35) benign(0.027) TCGA-D7-A748-01 5 149907686 149907686 C T NDST1 Silent p.R278R 0.16 TCGA-D7-A748-01 5 178413683 178413683 C T GRM6 Silent p.P524P 0.09 TCGA-D7-A748-01 5 26902673 26902673 A C CDH9 Missense_Mutation p.L389V 0.08 tolerated(0.69) benign(0.026) TCGA-D7-A748-01 9 101911535 101911535 G A TGFBR1 Missense_Mutation p.R487Q 0.11 deleterious(0) probably_damaging(0.98) TCGA-D7-A748-01 X 106845698 106845698 C T FRMPD3 Missense_Mutation p.R1510W 0.07 deleterious(0.01) benign(0.39) TCGA-D7-A748-01 X 119573035 119573035 T G LAMP2 Intron 0.13 TCGA-D7-A748-01 X 153136336 153136336 G A L1CAM Silent p.S201S 0.07 TCGA-D7-A748-01 X 48054780 48054780 A G SSX5 Silent p.D5D 0.11 TCGA-D7-A74A-01 10 100159985 100159985 G C PYROXD2 Missense_Mutation p.N115K 0.25 tolerated(0.05) benign(0.006) TCGA-D7-A74A-01 10 108924012 108924012 C T SORCS1 Silent p.R91R 0.18 TCGA-D7-A74A-01 10 118315528 118315528 G A PNLIP Silent p.A276A 0.25 TCGA-D7-A74A-01 10 129537320 129537320 G C FOXI2 3'UTR 0.16 TCGA-D7-A74A-01 10 34630665 34630665 A G PARD3 Silent p.L769L 0.19 TCGA-D7-A74A-01 10 43882562 43882562 G A HNRNPF Silent p.T257T 0.75 TCGA-D7-A74A-01 10 70043806 70043806 T G PBLD 3'UTR 0.33 TCGA-D7-A74A-01 10 7242396 7242396 A T SFMBT2 Missense_Mutation p.F513Y 0.69 tolerated(1) benign(0.079) TCGA-D7-A74A-01 10 88681425 88681425 G T BMPR1A Nonsense_Mutation p.E439* 0.91 TCGA-D7-A74A-01 10 91404938 91404938 C A PANK1 Missense_Mutation p.G41V 0.14 deleterious_low_confidence(0.01) benign(0.003) TCGA-D7-A74A-01 10 94223573 94223573 A G IDE Silent p.R892R 0.24 TCGA-D7-A74A-01 10 97818104 97818104 G C CCNJ 3'UTR 0.33 TCGA-D7-A74A-01 11 116643657 116643657 G C BUD13 Silent p.S8S 0.25 TCGA-D7-A74A-01 11 124621977 124621977 C G VSIG2 Silent p.L19L 0.38 TCGA-D7-A74A-01 11 19258993 19258993 C G E2F8 Missense_Mutation p.E107Q 0.39 deleterious(0) probably_damaging(0.999) TCGA-D7-A74A-01 11 5624747 5624747 C T TRIM6 Missense_Mutation p.R97W 0.52 tolerated(0.13) possibly_damaging(0.515) TCGA-D7-A74A-01 11 5664681 5664681 G C TRIM34 Missense_Mutation p.Q403H 0.34 tolerated(0.08) probably_damaging(0.954) TCGA-D7-A74A-01 11 61544890 61544890 C T MYRF Missense_Mutation p.S582L 0.87 deleterious(0) benign(0.322) TCGA-D7-A74A-01 11 62124549 62124549 G C ASRGL1 Missense_Mutation p.E142Q 0.44 deleterious(0.05) possibly_damaging(0.596) TCGA-D7-A74A-01 11 64815685 64815687 CTC - NAALADL1 In_Frame_Del p.E429del 0.43 TCGA-D7-A74A-01 11 65417081 65417081 C T SIPA1 Missense_Mutation p.L859F 0.25 deleterious(0.01) possibly_damaging(0.883) TCGA-D7-A74A-01 11 77921619 77921619 C G USP35 Silent p.V906V 0.33 TCGA-D7-A74A-01 11 78387370 78387370 C T TENM4 Missense_Mutation p.G1775S 0.39 deleterious(0.04) probably_damaging(0.992) TCGA-D7-A74A-01 11 89421771 89421771 G T FOLH1B RNA 0.40 TCGA-D7-A74A-01 12 111358380 111358380 G A MYL2 5'UTR 0.38 TCGA-D7-A74A-01 12 124179826 124179826 G C TCTN2 Missense_Mutation p.E432Q 0.17 deleterious(0.01) benign(0.292) TCGA-D7-A74A-01 12 15067600 15067600 G C ERP27 3'UTR 0.26 TCGA-D7-A74A-01 12 25378562 25378562 C T KRAS Missense_Mutation p.A146T 0.67 deleterious(0.03) possibly_damaging(0.876) TCGA-D7-A74A-01 12 40344994 40344994 C T SLC2A13 Intron 0.23 TCGA-D7-A74A-01 12 49719629 49719629 C T TROAP Nonsense_Mutation p.R199* 0.74 TCGA-D7-A74A-01 12 5021955 5021955 G T KCNA1 Missense_Mutation p.V471F 0.67 tolerated_low_confidence(0.23) benign(0.004) TCGA-D7-A74A-01 12 53699698 53699698 G C C12orf10 Missense_Mutation p.E166Q 0.17 deleterious(0.02) possibly_damaging(0.463) TCGA-D7-A74A-01 12 53699752 53699752 G A C12orf10 Missense_Mutation p.E184K 0.11 deleterious(0.02) benign(0.223) TCGA-D7-A74A-01 12 58140371 58140371 G C TSPAN31 Splice_Site p.X105_splice 0.14 TCGA-D7-A74A-01 12 6672489 6672489 G C NOP2 Missense_Mutation p.L327V 0.09 tolerated(0.51) benign(0.009) TCGA-D7-A74A-01 12 69981976 69981976 T C CCT2 Missense_Mutation p.I127T 0.21 deleterious(0.02) benign(0.376) TCGA-D7-A74A-01 12 9875317 9875317 T C CLECL1 Missense_Mutation p.K137E 0.16 tolerated(0.29) benign(0.023) TCGA-D7-A74A-01 13 102568924 102568924 C A FGF14 Intron 0.09 TCGA-D7-A74A-01 13 103418621 103418621 A C TEX30 3'UTR 0.25 TCGA-D7-A74A-01 13 88329699 88329699 G C SLITRK5 Missense_Mutation p.V686L 0.26 deleterious(0.02) possibly_damaging(0.804) TCGA-D7-A74A-01 13 94482694 94482694 G A GPC6 Missense_Mutation p.V203M 0.34 deleterious(0.02) probably_damaging(0.954) TCGA-D7-A74A-01 14 103925081 103925081 G A MARK3 Intron 0.89 TCGA-D7-A74A-01 14 104206598 104206598 C T PPP1R13B Missense_Mutation p.G719R 0.11 deleterious(0) probably_damaging(0.981) TCGA-D7-A74A-01 14 24654109 24654109 C T IPO4 Missense_Mutation p.A496T 0.28 tolerated(0.68) benign(0.005) TCGA-D7-A74A-01 14 51226636 51226636 C G NIN Missense_Mutation p.E780Q 0.34 tolerated(0.06) probably_damaging(0.999) TCGA-D7-A74A-01 15 43569080 43569080 G A TGM7 Silent p.I651I 0.47 TCGA-D7-A74A-01 15 43569089 43569089 G A TGM7 Silent p.S648S 0.44 TCGA-D7-A74A-01 15 44087253 44087253 A C SERINC4 Missense_Mutation p.L501W 0.37 tolerated_low_confidence(0.17) benign(0.339) TCGA-D7-A74A-01 15 45007719 45007719 G T B2M Nonsense_Mutation p.E56* 0.34 TCGA-D7-A74A-01 15 45007752 45007752 G C B2M Missense_Mutation p.E67Q 0.32 tolerated(0.17) benign(0.285) TCGA-D7-A74A-01 15 45007929 45007929 G C B2M Intron 0.29 TCGA-D7-A74A-01 15 50264940 50264940 C T ATP8B4 Missense_Mutation p.R361Q 0.63 tolerated(0.35) benign(0.011) TCGA-D7-A74A-01 15 65623494 65623494 G A IGDCC3 Silent p.V485V 0.36 TCGA-D7-A74A-01 15 67473643 67473643 C G SMAD3 Missense_Mutation p.N241K 0.33 deleterious(0.01) benign(0.412) TCGA-D7-A74A-01 15 72533670 72533670 C A PARP6 3'UTR 0.44 TCGA-D7-A74A-01 15 75185569 75185569 C T MPI Missense_Mutation p.S193F 0.37 deleterious(0.02) benign(0.013) TCGA-D7-A74A-01 15 85488357 85488357 G A SLC28A1 Missense_Mutation p.V626I 0.41 tolerated(0.08) benign(0) TCGA-D7-A74A-01 16 21262073 21262073 C T ANKS4B Silent p.L396L 0.39 TCGA-D7-A74A-01 16 55880292 55880292 G A CES5A 3'UTR 0.50 TCGA-D7-A74A-01 16 56397849 56397849 G A AMFR Missense_Mutation p.L590F 0.31 deleterious(0.04) benign(0.062) TCGA-D7-A74A-01 16 56397909 56397909 G A AMFR Missense_Mutation p.R570C 0.86 deleterious(0) probably_damaging(0.931) TCGA-D7-A74A-01 16 67409242 67409242 C G LRRC36 Silent p.L529L 0.25 TCGA-D7-A74A-01 17 39659672 39659672 C T KRT13 Missense_Mutation p.R201H 0.20 tolerated(0.06) possibly_damaging(0.597) TCGA-D7-A74A-01 17 40453395 40453395 G C STAT5A Missense_Mutation p.M364I 0.38 deleterious(0.02) benign(0.16) TCGA-D7-A74A-01 17 43323028 43323028 C T FMNL1 Silent p.F974F 0.26 TCGA-D7-A74A-01 17 4805057 4805057 C T C17orf107 3'UTR 0.48 TCGA-D7-A74A-01 17 48631744 48631744 G A SPATA20 Missense_Mutation p.R697H 0.31 tolerated(0.13) possibly_damaging(0.707) TCGA-D7-A74A-01 17 5984245 5984245 G A WSCD1 Silent p.Q89Q 0.30 TCGA-D7-A74A-01 17 68128377 68128377 T - KCNJ16 Frame_Shift_Del p.F51Lfs*25 0.35 TCGA-D7-A74A-01 17 74922697 74922697 C T MGAT5B Silent p.I403I 0.61 TCGA-D7-A74A-01 17 77987280 77987280 C T TBC1D16 Missense_Mutation p.G23S 1.00 tolerated(0.27) benign(0.059) TCGA-D7-A74A-01 18 3126753 3126753 T C MYOM1 Silent p.V979V 0.26 TCGA-D7-A74A-01 18 52921845 52921845 C A TCF4 Missense_Mutation p.M513I 0.53 tolerated(0.1) benign(0.01) TCGA-D7-A74A-01 19 38966036 38966036 C T RYR1 Silent p.D1413D 0.19 TCGA-D7-A74A-01 19 39013756 39013756 G A RYR1 Splice_Site p.X3449_splice 0.26 TCGA-D7-A74A-01 19 39292713 39292713 C G LGALS4 Silent p.R248R 0.29 TCGA-D7-A74A-01 19 42561074 42561074 C T GRIK5 Intron 0.39 TCGA-D7-A74A-01 19 43772263 43772263 C T PSG9 Missense_Mutation p.E35K 0.31 deleterious(0.04) benign(0.013) TCGA-D7-A74A-01 19 45911470 45911470 G T CD3EAP Missense_Mutation p.V82F 0.26 deleterious(0) probably_damaging(0.991) TCGA-D7-A74A-01 19 45912019 45912019 G C CD3EAP Missense_Mutation p.E265Q 0.32 deleterious(0.04) benign(0.389) TCGA-D7-A74A-01 19 45912148 45912148 G C CD3EAP Missense_Mutation p.E308Q 0.31 tolerated(0.09) benign(0.071) TCGA-D7-A74A-01 19 49416330 49416330 G A NUCB1 Missense_Mutation p.M181I 0.09 tolerated(0.07) benign(0.15) TCGA-D7-A74A-01 19 55341629 55341629 A T KIR3DL1 Missense_Mutation p.T412S 0.27 tolerated(0.07) benign(0.019) TCGA-D7-A74A-01 19 58198625 58198625 C T ZNF551 Missense_Mutation p.R328C 0.07 tolerated(0.1) possibly_damaging(0.543) TCGA-D7-A74A-01 19 58858758 58858758 C T A1BG Missense_Mutation p.E481K 0.25 tolerated(0.56) possibly_damaging(0.453) TCGA-D7-A74A-01 1 100818371 100818371 C A CDC14A 5'UTR 0.43 TCGA-D7-A74A-01 1 103461579 103461579 C A COL11A1 Missense_Mutation p.G754V 0.28 unknown(0) TCGA-D7-A74A-01 1 114640404 114640404 C T SYT6 Missense_Mutation p.R402Q 0.47 deleterious(0) benign(0.291) TCGA-D7-A74A-01 1 152276824 152276824 G A FLG Missense_Mutation p.A3513V 0.28 unknown(0) TCGA-D7-A74A-01 1 155296538 155296538 C T RUSC1 Nonsense_Mutation p.Q677* 0.33 TCGA-D7-A74A-01 1 161134896 161134896 C T USP21 Missense_Mutation p.R524W 0.29 deleterious(0) probably_damaging(0.965) TCGA-D7-A74A-01 1 162569224 162569224 A T UAP1 3'UTR 0.29 TCGA-D7-A74A-01 1 16907958 16907958 G A NBPF1 Nonsense_Mutation p.Q446* 0.06 TCGA-D7-A74A-01 1 16914263 16914263 G A NBPF1 Nonsense_Mutation p.Q175* 0.03 TCGA-D7-A74A-01 1 173833340 173833340 T C ZBTB37 5'Flank 0.33 TCGA-D7-A74A-01 1 19441940 19441940 C G UBR4 Missense_Mutation p.G3672A 0.41 probably_damaging(0.981) TCGA-D7-A74A-01 1 20005855 20005855 G A HTR6 Silent p.T439T 0.41 TCGA-D7-A74A-01 1 209951479 209951479 G C TRAF3IP3 Missense_Mutation p.E405Q 0.26 tolerated(0.9) possibly_damaging(0.861) TCGA-D7-A74A-01 1 212792825 212792825 G C ATF3 Missense_Mutation p.Q158H 0.31 tolerated(0.05) benign(0.005) TCGA-D7-A74A-01 1 222801443 222801443 G A MIA3 Missense_Mutation p.R294K 0.27 deleterious(0.04) benign(0.355) TCGA-D7-A74A-01 1 226109907 226109907 C G RP4-559A3.7 Missense_Mutation p.E105D 0.30 tolerated_low_confidence(0.05) probably_damaging(0.967) TCGA-D7-A74A-01 1 28209140 28209140 T A THEMIS2 Missense_Mutation p.S435R 0.36 tolerated(0.19) benign(0.026) TCGA-D7-A74A-01 1 29520433 29520433 G C MECR 3'UTR 0.38 TCGA-D7-A74A-01 1 36026175 36026175 G C NCDN Silent p.G141G 0.33 TCGA-D7-A74A-01 1 36615055 36615055 G A TRAPPC3 5'UTR 0.50 TCGA-D7-A74A-01 1 55188388 55188388 C T TTC4 Silent p.A170A 0.40 TCGA-D7-A74A-01 1 62704051 62704051 A C KANK4 Silent p.A962A 0.51 TCGA-D7-A74A-01 20 19981541 19981541 C T RIN2 Silent p.I932I 0.28 TCGA-D7-A74A-01 20 34526798 34526798 C T PHF20 Missense_Mutation p.P827L 0.22 tolerated(0.14) probably_damaging(0.981) TCGA-D7-A74A-01 20 42331390 42331390 C T MYBL2 Silent p.G404G 0.40 TCGA-D7-A74A-01 20 44682238 44682238 C T SLC12A5 Missense_Mutation p.R880C 0.22 deleterious(0) benign(0.421) TCGA-D7-A74A-01 20 44980832 44980832 C T SLC35C2 Missense_Mutation p.R232H 0.16 tolerated(0.27) benign(0.059) TCGA-D7-A74A-01 20 5565009 5565009 G C GPCPD1 Intron 0.22 TCGA-D7-A74A-01 20 58569352 58569352 G C CDH26 Missense_Mutation p.D492H 0.26 deleterious(0) probably_damaging(0.998) TCGA-D7-A74A-01 20 61526264 61526264 C G DIDO1 Silent p.V778V 0.22 TCGA-D7-A74A-01 21 15517046 15517046 G C LIPI Nonsense_Mutation p.S419* 0.20 TCGA-D7-A74A-01 21 41033308 41033308 C T B3GALT5 Silent p.S274S 0.36 TCGA-D7-A74A-01 22 17444667 17444667 G A GAB4 Missense_Mutation p.P510L 0.47 deleterious(0.04) benign(0.009) TCGA-D7-A74A-01 22 18364012 18364012 G A MICAL3 Intron 0.43 TCGA-D7-A74A-01 22 37273825 37273825 C T NCF4 3'UTR 0.36 TCGA-D7-A74A-01 22 45221390 45221390 C T ARHGAP8 Silent p.H293H 0.40 TCGA-D7-A74A-01 22 46657257 46657257 G C PKDREJ Missense_Mutation p.L655V 0.43 deleterious(0.03) probably_damaging(0.997) TCGA-D7-A74A-01 22 50301458 50301458 G C ALG12 Silent p.L301L 0.45 TCGA-D7-A74A-01 22 51019914 51019914 C T CHKB Silent p.A172A 0.41 TCGA-D7-A74A-01 2 108496559 108496559 T A RGPD4 Missense_Mutation p.I1687N 0.33 tolerated_low_confidence(0.07) benign(0.063) TCGA-D7-A74A-01 2 112786484 112786484 C T MERTK 3'UTR 0.16 TCGA-D7-A74A-01 2 119600774 119600774 G A EN1 Missense_Mutation p.R307W 0.55 deleterious(0) probably_damaging(1) TCGA-D7-A74A-01 2 152484297 152484297 G A NEB Missense_Mutation p.R3295W 0.29 probably_damaging(0.996) TCGA-D7-A74A-01 2 166532873 166532873 G C CSRNP3 Missense_Mutation p.D154H 0.26 deleterious(0) probably_damaging(0.999) TCGA-D7-A74A-01 2 170502333 170502333 G A CCDC173 3'UTR 0.17 TCGA-D7-A74A-01 2 171375991 171375991 A T MYO3B Missense_Mutation p.E1172D 0.38 tolerated_low_confidence(0.49) benign(0.001) TCGA-D7-A74A-01 2 1795607 1795607 T A MYT1L 3'UTR 0.41 TCGA-D7-A74A-01 2 185801428 185801428 A C ZNF804A Silent p.T435T 0.25 TCGA-D7-A74A-01 2 188211047 188211047 C T CALCRL Missense_Mutation p.R417H 0.56 tolerated(0.08) benign(0.055) TCGA-D7-A74A-01 2 189864260 189864260 G C COL3A1 Missense_Mutation p.G729A 0.23 unknown(0) TCGA-D7-A74A-01 2 190738367 190738367 G C PMS1 Silent p.V873V 0.24 TCGA-D7-A74A-01 2 202545621 202545621 C T MPP4 Missense_Mutation p.R290Q 0.19 deleterious(0.01) probably_damaging(0.956) TCGA-D7-A74A-01 2 204161591 204161591 C T CYP20A1 Missense_Mutation p.S450L 0.28 deleterious(0) benign(0.07) TCGA-D7-A74A-01 2 20647766 20647766 G A RHOB Silent p.Q180Q 0.45 TCGA-D7-A74A-01 2 220494941 220494941 G A SLC4A3 Silent p.S253S 0.21 TCGA-D7-A74A-01 2 242170209 242170209 C T HDLBP Missense_Mutation p.G1147S 0.28 deleterious(0) probably_damaging(0.923) TCGA-D7-A74A-01 2 62066569 62066569 C A FAM161A Nonsense_Mutation p.E524* 0.47 TCGA-D7-A74A-01 2 71192369 71192369 C A ATP6V1B1 3'UTR 0.28 TCGA-D7-A74A-01 2 88885457 88885457 G C EIF2AK3 Missense_Mutation p.L518V 0.42 tolerated(0.16) possibly_damaging(0.521) TCGA-D7-A74A-01 3 151161458 151161458 G A IGSF10 Silent p.S1759S 0.37 TCGA-D7-A74A-01 3 188327526 188327526 G C LPP Missense_Mutation p.G336A 0.30 tolerated(0.92) benign(0.001) TCGA-D7-A74A-01 3 20017591 20017591 G A RAB5A Missense_Mutation p.S123N 0.35 tolerated(0.79) benign(0.024) TCGA-D7-A74A-01 3 37367630 37367630 C G GOLGA4 Missense_Mutation p.S1440C 0.27 probably_damaging(0.996) TCGA-D7-A74A-01 3 39226540 39226540 C G XIRP1 Missense_Mutation p.R1466T 0.28 tolerated(0.11) benign(0.031) TCGA-D7-A74A-01 3 86114777 86114777 G A CADM2 Silent p.Q364Q 0.27 TCGA-D7-A74A-01 3 97367199 97367199 G T EPHA6 Intron 0.39 TCGA-D7-A74A-01 3 97868758 97868758 T G OR5H14 Missense_Mutation p.F177V 0.35 deleterious(0) possibly_damaging(0.824) TCGA-D7-A74A-01 4 122831496 122831496 C T TRPC3 Silent p.R535R 0.37 TCGA-D7-A74A-01 4 126370464 126370464 G A FAT4 Missense_Mutation p.D2765N 0.41 probably_damaging(0.999) TCGA-D7-A74A-01 4 186392204 186392204 C G CCDC110 Splice_Site p.X4_splice 0.41 TCGA-D7-A74A-01 4 57272837 57272837 C T PPAT Missense_Mutation p.E76K 0.28 deleterious(0.04) benign(0.226) TCGA-D7-A74A-01 4 68928981 68928981 C T TMPRSS11F Intron 0.47 TCGA-D7-A74A-01 5 135692643 135692643 C A TRPC7 Nonsense_Mutation p.E145* 0.29 TCGA-D7-A74A-01 5 148685960 148685960 G C AFAP1L1 Missense_Mutation p.K176N 0.45 deleterious(0) probably_damaging(0.999) TCGA-D7-A74A-01 5 15936911 15936911 C T FBXL7 Silent p.T364T 0.16 TCGA-D7-A74A-01 6 111628643 111628643 C T REV3L Missense_Mutation p.R3058Q 0.35 tolerated(0.09) probably_damaging(0.999) TCGA-D7-A74A-01 6 111689032 111689032 C T REV3L Missense_Mutation p.V1987I 0.37 tolerated(0.43) benign(0.001) TCGA-D7-A74A-01 6 11185831 11185831 G C NEDD9 Missense_Mutation p.S690C 0.32 deleterious(0.01) probably_damaging(0.95) TCGA-D7-A74A-01 6 138618056 138618056 G A KIAA1244 Missense_Mutation p.M1204I 0.45 deleterious(0.01) benign(0.004) TCGA-D7-A74A-01 6 15501390 15501390 G A JARID2 Missense_Mutation p.R733H 0.28 deleterious(0) possibly_damaging(0.84) TCGA-D7-A74A-01 6 32163612 32163612 C T NOTCH4 Missense_Mutation p.G1872R 0.21 tolerated_low_confidence(0.51) benign(0.002) TCGA-D7-A74A-01 6 36767802 36767802 C T CPNE5 Missense_Mutation p.V77M 0.22 deleterious(0.02) probably_damaging(0.919) TCGA-D7-A74A-01 6 43488069 43488069 G C POLR1C Missense_Mutation p.E187Q 0.25 tolerated(0.09) possibly_damaging(0.487) TCGA-D7-A74A-01 6 73043512 73043512 G A RIMS1 Missense_Mutation p.R1447K 0.57 deleterious(0) benign(0.202) TCGA-D7-A74A-01 6 75893724 75893724 G A COL12A1 Silent p.H378H 0.44 TCGA-D7-A74A-01 6 99997433 99997433 G - CCNC Frame_Shift_Del p.Y184Tfs*13 0.32 TCGA-D7-A74A-01 7 100065187 100065187 G A TSC22D4 Silent p.I322I 0.65 TCGA-D7-A74A-01 7 100320428 100320428 C T EPO Missense_Mutation p.R130C 0.30 deleterious(0) probably_damaging(0.999) TCGA-D7-A74A-01 7 100551542 100551542 C G MUC3A Missense_Mutation p.S98C 0.10 tolerated(0.19) possibly_damaging(0.874) TCGA-D7-A74A-01 7 127670418 127670418 G A LRRC4 Silent p.A92A 0.33 TCGA-D7-A74A-01 7 128040903 128040903 C T IMPDH1 Missense_Mutation p.E183K 0.26 deleterious(0.01) possibly_damaging(0.526) TCGA-D7-A74A-01 7 2984021 2984021 C T CARD11 Missense_Mutation p.R170H 0.29 tolerated(0.13) benign(0.232) TCGA-D7-A74A-01 7 31690788 31690788 G A CCDC129 Silent p.T898T 0.30 TCGA-D7-A74A-01 7 50444276 50444276 G A IKZF1 Missense_Mutation p.R69H 0.25 deleterious(0.04) benign(0.008) TCGA-D7-A74A-01 7 55496107 55496107 C T LANCL2 Missense_Mutation p.R409C 0.28 deleterious(0) probably_damaging(0.99) TCGA-D7-A74A-01 7 5944826 5944826 C T CCZ1 Silent p.S208S 0.19 TCGA-D7-A74A-01 7 72430695 72430695 C T TRIM74 Missense_Mutation p.E195K 0.28 tolerated(0.23) benign(0.015) TCGA-D7-A74A-01 7 8791071 8791071 T C NXPH1 Missense_Mutation p.V163A 0.13 deleterious(0) probably_damaging(0.92) TCGA-D7-A74A-01 7 98257885 98257885 G A NPTX2 Missense_Mutation p.G414R 0.34 deleterious(0.01) possibly_damaging(0.832) TCGA-D7-A74A-01 7 98547370 98547370 G C TRRAP Missense_Mutation p.E1674Q 0.30 possibly_damaging(0.482) TCGA-D7-A74A-01 8 109215229 109215229 G A EIF3E Nonsense_Mutation p.Q428* 0.20 TCGA-D7-A74A-01 8 113418894 113418896 TTC - CSMD3 In_Frame_Del p.R1889del 0.18 TCGA-D7-A74A-01 8 121500557 121500557 G T MTBP Nonsense_Mutation p.E442* 0.23 TCGA-D7-A74A-01 8 130789618 130789618 G A GSDMC Silent p.V72V 0.47 TCGA-D7-A74A-01 8 132988283 132988283 G A EFR3A Missense_Mutation p.G390E 0.24 deleterious(0) possibly_damaging(0.876) TCGA-D7-A74A-01 9 126777437 126777437 G C LHX2 Silent p.L120L 0.29 TCGA-D7-A74A-01 9 131455255 131455255 G A SET Missense_Mutation p.G176R 0.24 deleterious(0.03) probably_damaging(0.952) TCGA-D7-A74A-01 9 14784491 14784491 C A FREM1 Missense_Mutation p.G1440V 0.37 deleterious(0) probably_damaging(0.988) TCGA-D7-A74A-01 9 35684736 35684736 G A TPM2 Intron 0.85 TCGA-D7-A74A-01 X 144905375 144905375 C G SLITRK2 Missense_Mutation p.L478V 0.31 deleterious(0) probably_damaging(0.998) TCGA-D7-A74A-01 X 151336929 151336929 G T GABRA3 Missense_Mutation p.S417Y 0.89 deleterious(0.03) possibly_damaging(0.451) TCGA-D7-A74A-01 X 29301098 29301098 A C IL1RAPL1 Missense_Mutation p.Q42H 0.74 tolerated(0.21) benign(0.275) TCGA-D7-A74A-01 X 38145180 38145180 C G RPGR Missense_Mutation p.E1024D 0.89 unknown(0) TCGA-D7-A74A-01 X 8538713 8538713 G A KAL1 Missense_Mutation p.R297W 0.50 deleterious(0.01) benign(0.01) TCGA-D7-A74B-01 11 130278437 130278437 C T ADAMTS8 Missense_Mutation p.R674Q 0.04 deleterious(0) benign(0.044) TCGA-D7-A74B-01 11 5172659 5172659 T G OR52A1 3'UTR 0.06 TCGA-D7-A74B-01 11 66114263 66114263 C G B3GNT1 Missense_Mutation p.G252R 0.04 tolerated(0.58) benign(0.042) TCGA-D7-A74B-01 13 72440294 72440294 A G DACH1 Missense_Mutation p.V205A 0.06 benign(0.236) TCGA-D7-A74B-01 14 73959816 73959816 A G HEATR4 Missense_Mutation p.L933P 0.07 tolerated(0.27) benign(0.002) TCGA-D7-A74B-01 16 110496 110496 G A RHBDF1 Silent p.S533S 0.07 TCGA-D7-A74B-01 16 2815032 2815032 A G SRRM2 Silent p.S1501S 0.05 TCGA-D7-A74B-01 17 7579394 7579400 GGGACAG - TP53 Frame_Shift_Del p.S96Ffs*25 0.12 TCGA-D7-A74B-01 17 7809274 7809274 G A CHD3 Missense_Mutation p.R1501Q 0.09 possibly_damaging(0.553) TCGA-D7-A74B-01 18 18548822 18548822 C T ROCK1 Splice_Site p.X972_splice 0.06 TCGA-D7-A74B-01 19 19387471 19387471 G A SUGP1 Missense_Mutation p.R642W 0.13 deleterious(0.02) unknown(0) TCGA-D7-A74B-01 19 39207769 39207769 G A ACTN4 Missense_Mutation p.R319H 0.07 deleterious(0) probably_damaging(0.996) TCGA-D7-A74B-01 19 39435716 39435716 C T CTC-360G5.8 Missense_Mutation p.V101I 0.04 tolerated_low_confidence(0.62) benign(0) TCGA-D7-A74B-01 19 43359798 43359798 C A PSG10P 5'Flank 0.04 TCGA-D7-A74B-01 19 47861151 47861151 C T DHX34 Missense_Mutation p.P349L 0.05 tolerated(0.18) benign(0.047) TCGA-D7-A74B-01 1 152323428 152323428 T C FLG2 Silent p.Q2278Q 0.04 TCGA-D7-A74B-01 1 156288766 156288766 C T CCT3 Missense_Mutation p.V218I 0.08 tolerated(0.28) benign(0.124) TCGA-D7-A74B-01 1 203677138 203677138 G A ATP2B4 Missense_Mutation p.R488H 0.05 tolerated(0.23) benign(0.008) TCGA-D7-A74B-01 1 70501916 70501916 G A LRRC7 Splice_Site p.X665_splice 0.07 TCGA-D7-A74B-01 20 58318235 58318235 G A PHACTR3 Silent p.R64R 0.07 TCGA-D7-A74B-01 20 58318237 58318237 A T PHACTR3 Missense_Mutation p.N65I 0.07 deleterious(0.01) possibly_damaging(0.453) TCGA-D7-A74B-01 22 21989249 21989249 C G CCDC116 Silent p.R299R 0.07 TCGA-D7-A74B-01 22 38251635 38251635 T A EIF3L Silent p.A119A 0.10 TCGA-D7-A74B-01 2 136872700 136872700 G A CXCR4 Silent p.L270L 0.04 TCGA-D7-A74B-01 2 179412935 179412935 C T TTN Missense_Mutation p.D31140N 0.05 TCGA-D7-A74B-01 3 129389401 129389401 G A TMCC1 Missense_Mutation p.S428L 0.07 deleterious(0) probably_damaging(0.993) TCGA-D7-A74B-01 3 140409915 140409915 A C TRIM42 Missense_Mutation p.I656L 0.04 tolerated(1) benign(0.109) TCGA-D7-A74B-01 3 196612955 196612955 T C SENP5 Silent p.C301C 0.05 TCGA-D7-A74B-01 3 45745001 45745001 G A SACM1L Missense_Mutation p.R35H 0.06 deleterious(0) probably_damaging(0.996) TCGA-D7-A74B-01 5 140503670 140503670 C T PCDHB4 Missense_Mutation p.S697L 0.06 deleterious_low_confidence(0) benign(0.256) TCGA-D7-A74B-01 5 148407785 148407785 C T SH3TC2 Missense_Mutation p.E504K 0.04 deleterious(0) probably_damaging(0.999) TCGA-D7-A74B-01 5 153056676 153056676 T C GRIA1 Silent p.A338A 0.10 TCGA-D7-A74B-01 5 157078464 157078464 C A SOX30 Missense_Mutation p.R208L 0.05 tolerated_low_confidence(0.06) benign(0.007) TCGA-D7-A74B-01 6 27839700 27839700 G C HIST1H3I Missense_Mutation p.R132G 0.04 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-D7-A74B-01 6 30863264 30863264 G A DDR1 Missense_Mutation p.A533T 0.07 tolerated(0.47) benign(0.119) TCGA-D7-A74B-01 7 150707212 150707212 C T NOS3 Missense_Mutation p.P841L 0.06 tolerated(0.51) benign(0.359) TCGA-D7-A74B-01 7 31102892 31102892 C T ADCYAP1R1 Silent p.V4V 0.05 TCGA-D7-A74B-01 7 88423659 88423659 A G C7orf62 Silent p.L200L 0.05 TCGA-D7-A74B-01 7 91756819 91756819 T - CYP51A1 Frame_Shift_Del p.N199Mfs*10 0.15 TCGA-D7-A74B-01 7 99171017 99171017 T C ZNF655 Missense_Mutation p.M464T 0.05 tolerated(0.28) benign(0.092) TCGA-D7-A74B-01 8 88885931 88885931 T G DCAF4L2 Missense_Mutation p.N90T 0.04 deleterious(0.02) possibly_damaging(0.653) TCGA-D7-A74B-01 9 101818551 101818551 G T COL15A1 Missense_Mutation p.G1068W 0.04 deleterious(0) probably_damaging(0.999) TCGA-D7-A74B-01 9 131565732 131565732 G A TBC1D13 Silent p.E249E 0.07 TCGA-D7-A74B-01 X 2951149 2951149 C A ARSH Nonsense_Mutation p.S471* 0.09 TCGA-EQ-5647-01 10 21101831 21101831 T A NEBL Missense_Mutation p.R795S 0.31 deleterious(0.01) benign(0.057) TCGA-EQ-5647-01 10 55569247 55569247 T C PCDH15 Missense_Mutation p.K1538R 0.03 unknown(0) TCGA-EQ-5647-01 10 72500888 72500888 C A ADAMTS14 Missense_Mutation p.H635N 0.19 deleterious(0) probably_damaging(0.999) TCGA-EQ-5647-01 10 75526139 75526139 G A SEC24C Missense_Mutation p.V547I 0.40 deleterious(0.03) probably_damaging(0.997) TCGA-EQ-5647-01 10 8100408 8100408 G A GATA3 Missense_Mutation p.G128R 0.13 deleterious(0.02) probably_damaging(0.915) TCGA-EQ-5647-01 10 8100563 8100563 C T GATA3 Silent p.D179D 0.15 TCGA-EQ-5647-01 10 97918089 97918089 C A ZNF518A RNA 0.15 TCGA-EQ-5647-01 11 114441717 114441717 G T NXPE4 Missense_Mutation p.H526Q 0.47 deleterious(0) probably_damaging(1) TCGA-EQ-5647-01 11 128786552 128786552 G T KCNJ5 Missense_Mutation p.A396S 0.27 tolerated(0.75) benign(0) TCGA-EQ-5647-01 11 18194989 18194989 C T MRGPRX4 Silent p.S62S 0.31 TCGA-EQ-5647-01 11 18505470 18505470 T C TSG101 Missense_Mutation p.K264E 0.30 tolerated(0.55) benign(0.021) TCGA-EQ-5647-01 11 31805088 31805088 C T ELP4 3'UTR 0.20 TCGA-EQ-5647-01 11 56409733 56409733 G T OR5AP2 Silent p.L61L 0.51 TCGA-EQ-5647-01 11 66026277 66026277 G A KLC2 Missense_Mutation p.G71E 0.25 deleterious(0) probably_damaging(0.993) TCGA-EQ-5647-01 11 93469428 93469428 T C TAF1D Missense_Mutation p.S246G 0.33 tolerated_low_confidence(0.05) benign(0.072) TCGA-EQ-5647-01 12 10772822 10772822 T C STYK1 Missense_Mutation p.E397G 0.03 tolerated(0.09) probably_damaging(0.998) TCGA-EQ-5647-01 12 123342783 123342783 T C HIP1R Silent p.C650C 0.38 TCGA-EQ-5647-01 12 13061792 13061792 C T GPRC5A Silent p.F203F 0.04 TCGA-EQ-5647-01 12 22012551 22012551 G A ABCC9 Missense_Mutation p.A825V 0.74 deleterious(0) probably_damaging(0.991) TCGA-EQ-5647-01 12 50514118 50514118 G A COX14 3'UTR 0.36 TCGA-EQ-5647-01 12 70956771 70956771 C T PTPRB Missense_Mutation p.D1341N 0.03 deleterious(0.04) possibly_damaging(0.646) TCGA-EQ-5647-01 12 71054759 71054759 A C PTPRR Missense_Mutation p.L576R 0.03 tolerated(0.46) benign(0.001) TCGA-EQ-5647-01 13 108861879 108861879 G C LIG4 Missense_Mutation p.R580G 0.17 deleterious(0) probably_damaging(1) TCGA-EQ-5647-01 13 28830630 28830630 C T PAN3 Missense_Mutation p.T401M 0.40 deleterious(0.01) probably_damaging(1) TCGA-EQ-5647-01 14 22409601 22409601 A T TRAV9-2 Missense_Mutation p.T31S 0.18 tolerated(0.06) benign(0.073) TCGA-EQ-5647-01 14 24798345 24798345 C A ADCY4 Silent p.L482L 0.24 TCGA-EQ-5647-01 14 93178266 93178266 C A LGMN Silent p.S215S 0.14 TCGA-EQ-5647-01 14 93483134 93483134 G A ITPK1 Missense_Mutation p.R45W 0.15 deleterious(0) possibly_damaging(0.668) TCGA-EQ-5647-01 15 81565490 81565490 C T IL16 Silent p.Y245Y 0.08 TCGA-EQ-5647-01 16 67984928 67984928 G A SLC12A4 Missense_Mutation p.R447C 0.15 deleterious(0) possibly_damaging(0.888) TCGA-EQ-5647-01 16 75642762 75642762 G A ADAT1 Nonsense_Mutation p.R390* 0.17 TCGA-EQ-5647-01 16 9857896 9857896 G T GRIN2A Silent p.R1169R 0.51 TCGA-EQ-5647-01 17 10538727 10538727 C T MYH3 Missense_Mutation p.E1377K 0.38 deleterious(0.01) probably_damaging(0.989) TCGA-EQ-5647-01 17 7796749 7796749 G T CHD3 Missense_Mutation p.A278S 0.19 benign(0.403) TCGA-EQ-5647-01 17 79517825 79517825 T G C17orf70 Missense_Mutation p.D232A 0.15 deleterious(0) probably_damaging(0.939) TCGA-EQ-5647-01 18 50589747 50589747 C A DCC Missense_Mutation p.T353K 0.57 tolerated(0.3) benign(0.032) TCGA-EQ-5647-01 18 580882 580882 C T CETN1 Silent p.N158N 0.26 TCGA-EQ-5647-01 19 10398284 10398284 C T ICAM4 Intron 0.19 TCGA-EQ-5647-01 19 22364289 22364289 T A ZNF676 Missense_Mutation p.E77V 0.23 deleterious(0) benign(0.059) TCGA-EQ-5647-01 19 6707247 6707247 C A C3 Missense_Mutation p.E695D 0.35 deleterious(0.04) benign(0.076) TCGA-EQ-5647-01 1 152671655 152671655 C A LCE2A Missense_Mutation p.S93Y 0.19 deleterious(0.03) unknown(0) TCGA-EQ-5647-01 1 155026661 155026661 T C ADAM15 Silent p.Y126Y 0.25 TCGA-EQ-5647-01 1 161018090 161018090 G T ARHGAP30 Missense_Mutation p.D907E 0.47 tolerated_low_confidence(1) benign(0) TCGA-EQ-5647-01 1 178489948 178489948 T G TEX35 Missense_Mutation p.M161R 0.07 deleterious_low_confidence(0) benign(0.143) TCGA-EQ-5647-01 1 183208626 183208626 C T LAMC2 Silent p.S999S 0.23 TCGA-EQ-5647-01 1 216262463 216262463 T C USH2A Missense_Mutation p.T1593A 0.10 probably_damaging(0.934) TCGA-EQ-5647-01 1 238053244 238053244 C A ZP4 Missense_Mutation p.G108V 0.58 deleterious(0) possibly_damaging(0.542) TCGA-EQ-5647-01 1 25229007 25229007 G A RUNX3 Missense_Mutation p.S299L 0.47 tolerated(0.1) possibly_damaging(0.88) TCGA-EQ-5647-01 1 36306902 36306902 G A AGO4 Missense_Mutation p.V621I 0.06 tolerated(0.17) probably_damaging(0.918) TCGA-EQ-5647-01 1 55349369 55349369 A T DHCR24 Silent p.R103R 0.30 TCGA-EQ-5647-01 20 42168807 42168807 C T L3MBTL1 Silent p.V708V 0.15 TCGA-EQ-5647-01 20 51871800 51871800 G A TSHZ2 Silent p.K601K 0.14 TCGA-EQ-5647-01 20 51871810 51871810 G A TSHZ2 Missense_Mutation p.E605K 0.14 tolerated(0.29) benign(0.046) TCGA-EQ-5647-01 20 51871813 51871813 G A TSHZ2 Missense_Mutation p.D606N 0.13 tolerated(0.19) benign(0.223) TCGA-EQ-5647-01 20 51871968 51871968 G A TSHZ2 Silent p.L657L 0.19 TCGA-EQ-5647-01 20 51872223 51872223 G A TSHZ2 Silent p.L742L 0.20 TCGA-EQ-5647-01 20 51872454 51872454 G A TSHZ2 Missense_Mutation p.M819I 0.13 tolerated(0.55) benign(0.001) TCGA-EQ-5647-01 20 51872466 51872466 G A TSHZ2 Missense_Mutation p.M823I 0.10 tolerated(0.63) benign(0.001) TCGA-EQ-5647-01 20 51872467 51872467 G A TSHZ2 Missense_Mutation p.D824N 0.10 deleterious(0) possibly_damaging(0.628) TCGA-EQ-5647-01 20 51872482 51872482 G A TSHZ2 Missense_Mutation p.E829K 0.13 deleterious(0.02) probably_damaging(0.993) TCGA-EQ-5647-01 20 51872676 51872676 G A TSHZ2 Missense_Mutation p.M893I 0.17 deleterious(0) probably_damaging(0.958) TCGA-EQ-5647-01 20 51872755 51872755 G A TSHZ2 Missense_Mutation p.D920N 0.16 deleterious(0) probably_damaging(0.998) TCGA-EQ-5647-01 20 51872804 51872804 G A TSHZ2 Missense_Mutation p.R936K 0.13 deleterious(0) probably_damaging(0.996) TCGA-EQ-5647-01 20 51872833 51872833 G A TSHZ2 Missense_Mutation p.E946K 0.11 deleterious(0) probably_damaging(0.998) TCGA-EQ-5647-01 20 51872856 51872856 G A TSHZ2 Missense_Mutation p.M953I 0.09 tolerated(0.35) benign(0.245) TCGA-EQ-5647-01 20 51872865 51872865 G A TSHZ2 Missense_Mutation p.M956I 0.09 deleterious(0.02) probably_damaging(0.989) TCGA-EQ-5647-01 2 168100923 168100923 A C XIRP2 Missense_Mutation p.E1007D 0.27 probably_damaging(0.999) TCGA-EQ-5647-01 2 170042284 170042284 G A LRP2 Missense_Mutation p.R3192W 0.04 probably_damaging(0.999) TCGA-EQ-5647-01 2 182400291 182400291 C T ITGA4 3'UTR 0.23 TCGA-EQ-5647-01 2 219610881 219610881 A G TTLL4 Missense_Mutation p.N634S 0.35 tolerated(0.54) benign(0.003) TCGA-EQ-5647-01 2 74042660 74042660 C T C2orf78 Missense_Mutation p.S437F 0.22 tolerated(0.08) probably_damaging(0.971) TCGA-EQ-5647-01 3 130282057 130282057 G T COL6A6 Missense_Mutation p.Q70H 0.28 deleterious(0) probably_damaging(0.992) TCGA-EQ-5647-01 3 150877763 150877763 A T MED12L Missense_Mutation p.S328C 0.17 deleterious(0.01) possibly_damaging(0.739) TCGA-EQ-5647-01 3 46245463 46245463 G T CCR1 Nonsense_Mutation p.Y114* 0.25 TCGA-EQ-5647-01 3 72957515 72957515 T G GXYLT2 Intron 0.89 TCGA-EQ-5647-01 3 9547696 9547696 G A LHFPL4 Missense_Mutation p.R200W 0.40 deleterious(0) probably_damaging(1) TCGA-EQ-5647-01 4 188923983 188923983 C T ZFP42 Missense_Mutation p.R8W 0.28 deleterious(0.02) benign(0.324) TCGA-EQ-5647-01 4 87610306 87610306 A G PTPN13 Missense_Mutation p.K170R 0.24 tolerated(0.65) benign(0.389) TCGA-EQ-5647-01 5 110407621 110407621 A T TSLP Silent p.S11S 0.40 TCGA-EQ-5647-01 5 158585955 158585955 G A RNF145 Missense_Mutation p.P602L 0.27 deleterious(0) probably_damaging(1) TCGA-EQ-5647-01 5 178506747 178506747 A C ZNF354C Missense_Mutation p.K438N 0.20 deleterious(0) probably_damaging(1) TCGA-EQ-5647-01 5 180622114 180622114 G T TRIM7 3'UTR 0.56 TCGA-EQ-5647-01 5 94749724 94749724 C T FAM81B Missense_Mutation p.R123C 0.31 tolerated(0.05) benign(0.187) TCGA-EQ-5647-01 6 27101031 27101031 G A HIST1H2AG Missense_Mutation p.A61T 0.20 deleterious_low_confidence(0.01) benign(0.072) TCGA-EQ-5647-01 6 27776190 27776190 G A HIST1H2AI Missense_Mutation p.G68D 0.40 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-EQ-5647-01 6 31545010 31545010 T G TNF Missense_Mutation p.L133R 0.20 deleterious(0) probably_damaging(0.914) TCGA-EQ-5647-01 6 35919039 35919039 G A SLC26A8 Silent p.A791A 0.50 TCGA-EQ-5647-01 6 35987480 35987480 G A SLC26A8 Missense_Mutation p.A2V 0.29 tolerated_low_confidence(0.45) benign(0.001) TCGA-EQ-5647-01 6 50016324 50016324 T C DEFB112 Missense_Mutation p.K14R 0.22 tolerated(0.11) benign(0.292) TCGA-EQ-5647-01 6 99894207 99894207 G A USP45 Missense_Mutation p.R481C 0.18 tolerated(0.07) benign(0.076) TCGA-EQ-5647-01 7 142168887 142168887 G T TRBV5-4 5'UTR 0.41 TCGA-EQ-5647-01 7 6063309 6063309 A C AIMP2 Missense_Mutation p.K317T 0.13 tolerated(0.11) benign(0.055) TCGA-EQ-5647-01 7 77256920 77256920 A G PTPN12 Missense_Mutation p.T642A 0.19 tolerated_low_confidence(0.95) benign(0.002) TCGA-EQ-5647-01 8 54791954 54791954 G A RGS20 Missense_Mutation p.R101H 0.32 tolerated_low_confidence(0.15) benign(0.002) TCGA-EQ-5647-01 8 56015093 56015093 C T XKR4 Silent p.S15S 0.37 TCGA-EQ-5647-01 8 67577533 67577533 G C VCPIP1 Missense_Mutation p.S554C 0.14 deleterious(0) possibly_damaging(0.885) TCGA-EQ-5647-01 9 124094903 124094903 G T GSN 3'UTR 0.35 TCGA-EQ-5647-01 9 125273389 125273389 T G OR1J2 Missense_Mutation p.F103L 0.04 deleterious_low_confidence(0.02) benign(0.216) TCGA-EQ-5647-01 9 5805111 5805111 G A ERMP1 Silent p.L610L 0.14 TCGA-EQ-5647-01 9 94519612 94519612 G A ROR2 Silent p.C135C 0.26 TCGA-EQ-5647-01 X 100667850 100667850 C A HNRNPH2 Missense_Mutation p.H292N 0.14 deleterious(0) probably_damaging(0.938) TCGA-EQ-5647-01 X 107288274 107288274 C G VSIG1 5'UTR 0.23 TCGA-EQ-5647-01 X 114239785 114239785 C T IL13RA2 Missense_Mutation p.R364H 0.14 tolerated(0.54) benign(0) TCGA-EQ-5647-01 X 125685810 125685810 C A DCAF12L1 Missense_Mutation p.S261I 0.52 tolerated(0.2) benign(0.211) TCGA-EQ-5647-01 X 135736558 135736558 G A CD40LG Silent p.T105T 0.16 TCGA-EQ-5647-01 X 144905755 144905755 G T SLITRK2 Silent p.V604V 0.04 TCGA-EQ-5647-01 X 20081624 20081624 G A MAP7D2 Nonsense_Mutation p.R94* 0.58 TCGA-EQ-5647-01 X 46433894 46433894 C G CHST7 Missense_Mutation p.D176E 0.25 tolerated_low_confidence(0.12) benign(0.092) TCGA-EQ-5647-01 X 64137662 64137662 T C ZC4H2 3'UTR 0.15 TCGA-EQ-5647-01 X 69772062 69772062 G A TEX11 Missense_Mutation p.P827S 0.29 tolerated(0.1) benign(0.178) TCGA-EQ-8122-01 10 13251159 13251159 G T MCM10 Intron 0.10 TCGA-EQ-8122-01 10 135094780 135094780 G A TUBGCP2 Missense_Mutation p.S885F 0.12 tolerated(0.61) benign(0.003) TCGA-EQ-8122-01 10 46121821 46121821 G A ZFAND4 Missense_Mutation p.H484Y 0.21 tolerated(0.31) possibly_damaging(0.512) TCGA-EQ-8122-01 10 7327907 7327907 T C SFMBT2 Missense_Mutation p.E149G 0.30 deleterious(0.01) probably_damaging(0.975) TCGA-EQ-8122-01 10 90350351 90350351 G A LIPJ 5'UTR 0.21 TCGA-EQ-8122-01 11 103157000 103157000 T C DYNC2H1 Missense_Mutation p.L3643P 0.22 probably_damaging(0.978) TCGA-EQ-8122-01 11 113934125 113934125 G A ZBTB16 Missense_Mutation p.D35N 0.13 deleterious(0) probably_damaging(1) TCGA-EQ-8122-01 11 114441753 114441753 C A NXPE4 Missense_Mutation p.W514C 0.09 deleterious(0.02) probably_damaging(1) TCGA-EQ-8122-01 11 1268887 1268887 G A MUC5B Missense_Mutation p.G3593R 0.66 probably_damaging(1) TCGA-EQ-8122-01 11 128628065 128628065 C T FLI1 Missense_Mutation p.A25V 0.17 deleterious(0.02) possibly_damaging(0.864) TCGA-EQ-8122-01 11 16816468 16816468 A C PLEKHA7 Missense_Mutation p.V836G 0.48 deleterious(0.03) benign(0.197) TCGA-EQ-8122-01 11 26681809 26681809 C T ANO3 Missense_Mutation p.H922Y 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-EQ-8122-01 11 44069983 44069983 C T ACCSL Missense_Mutation p.R133C 0.10 tolerated(0.26) benign(0.003) TCGA-EQ-8122-01 11 46702069 46702069 A G ARHGAP1 Missense_Mutation p.L263P 0.06 tolerated(0.08) benign(0.166) TCGA-EQ-8122-01 11 46896499 46896499 G A LRP4 Missense_Mutation p.R1361C 0.44 deleterious(0) probably_damaging(0.98) TCGA-EQ-8122-01 11 47306680 47306680 G A MADD Silent p.E782E 0.23 TCGA-EQ-8122-01 11 64082312 64082312 C T ESRRA Missense_Mutation p.A224V 0.06 tolerated(0.29) benign(0.008) TCGA-EQ-8122-01 11 66107615 66107615 C G BRMS1 Missense_Mutation p.R202T 0.76 deleterious(0) possibly_damaging(0.71) TCGA-EQ-8122-01 11 69999183 69999183 C T ANO1 Silent p.Y458Y 0.32 TCGA-EQ-8122-01 11 75316796 75316796 A C MAP6 Intron 0.28 TCGA-EQ-8122-01 11 89882277 89882277 T G NAALAD2 Splice_Site p.X161_splice 0.14 TCGA-EQ-8122-01 11 93529609 93529609 C G MED17 Nonsense_Mutation p.S349* 0.10 TCGA-EQ-8122-01 11 94731530 94731530 C G KDM4D Missense_Mutation p.R332G 0.06 deleterious(0.02) benign(0.075) TCGA-EQ-8122-01 12 110222176 110222176 C T TRPV4 Silent p.K801K 0.12 TCGA-EQ-8122-01 12 111884621 111884621 T C SH2B3 Missense_Mutation p.L266P 0.33 deleterious(0) probably_damaging(1) TCGA-EQ-8122-01 12 123915113 123915113 G A RILPL2 Missense_Mutation p.R145C 0.05 deleterious(0) probably_damaging(0.996) TCGA-EQ-8122-01 12 124846808 124846808 G A NCOR2 Silent p.D988D 0.65 TCGA-EQ-8122-01 12 53701473 53701473 G A AAAS Missense_Mutation p.H481Y 0.08 tolerated(0.25) benign(0.145) TCGA-EQ-8122-01 12 56493687 56493687 G C ERBB3 Missense_Mutation p.E1001D 0.29 tolerated(1) benign(0.001) TCGA-EQ-8122-01 12 58128428 58128428 G A AGAP2 Missense_Mutation p.S421L 0.10 deleterious(0) probably_damaging(0.98) TCGA-EQ-8122-01 12 63544532 63544532 T G AVPR1A Missense_Mutation p.S29R 0.13 deleterious(0.04) benign(0.035) TCGA-EQ-8122-01 12 64790499 64790499 C T RPS11P6 RNA 0.69 TCGA-EQ-8122-01 12 6559534 6559535 CT - CD27 Intron 0.12 TCGA-EQ-8122-01 13 102345019 102345019 G A ITGBL1 Missense_Mutation p.R367H 0.33 tolerated_low_confidence(0.19) benign(0.003) TCGA-EQ-8122-01 13 113153436 113153436 C T TUBGCP3 Missense_Mutation p.A791T 0.14 tolerated(0.54) benign(0.001) TCGA-EQ-8122-01 13 20041372 20041372 T C TPTE2 Missense_Mutation p.I169V 0.23 tolerated(0.19) benign(0.192) TCGA-EQ-8122-01 13 21401231 21401231 C A XPO4 Missense_Mutation p.S272I 0.13 tolerated(0.18) benign(0.044) TCGA-EQ-8122-01 13 36379912 36379912 A T DCLK1 Missense_Mutation p.L623H 0.31 deleterious(0) probably_damaging(0.938) TCGA-EQ-8122-01 13 36686318 36686318 G C DCLK1 Missense_Mutation p.F137L 0.09 deleterious(0) unknown(0) TCGA-EQ-8122-01 13 52991205 52991205 G A VPS36 Missense_Mutation p.S326L 0.17 tolerated(0.24) benign(0.004) TCGA-EQ-8122-01 14 103429456 103429456 T A CDC42BPB Missense_Mutation p.L921F 0.23 deleterious(0.05) possibly_damaging(0.836) TCGA-EQ-8122-01 14 20296061 20296061 G A OR4N2 Missense_Mutation p.G152S 0.09 deleterious(0.04) possibly_damaging(0.573) TCGA-EQ-8122-01 14 23887594 23887594 C T MYH7 Missense_Mutation p.A1332T 0.27 deleterious(0.01) possibly_damaging(0.666) TCGA-EQ-8122-01 14 60616089 60616089 C - DHRS7 Frame_Shift_Del p.N319Tfs*59 0.21 TCGA-EQ-8122-01 14 92047198 92047198 C T CATSPERB 3'UTR 0.31 TCGA-EQ-8122-01 14 92258735 92258735 A G TC2N Silent p.D341D 0.28 TCGA-EQ-8122-01 15 25417846 25417846 A G SNORD115-2 RNA 0.06 TCGA-EQ-8122-01 15 43572146 43572146 G T TGM7 Missense_Mutation p.S452Y 0.23 deleterious(0) probably_damaging(0.935) TCGA-EQ-8122-01 15 50339641 50339641 C T ATP8B4 Silent p.S36S 0.27 TCGA-EQ-8122-01 15 62273584 62273584 T G VPS13C Missense_Mutation p.H708P 0.17 tolerated(0.21) benign(0.24) TCGA-EQ-8122-01 15 64332386 64332386 G A DAPK2 Silent p.I25I 0.50 TCGA-EQ-8122-01 16 29858617 29858617 G A MVP Missense_Mutation p.E789K 0.16 tolerated(0.11) benign(0.025) TCGA-EQ-8122-01 16 30545794 30545794 G A ZNF747 Silent p.T69T 0.39 TCGA-EQ-8122-01 16 66646549 66646549 C T CMTM3 3'UTR 0.08 TCGA-EQ-8122-01 16 67220250 67220250 G A EXOC3L1 Silent p.S462S 0.26 TCGA-EQ-8122-01 16 70432202 70432202 C T ST3GAL2 Missense_Mutation p.D78N 0.07 benign(0.225) TCGA-EQ-8122-01 16 74990459 74990459 G A WDR59 Nonsense_Mutation p.R52* 0.06 TCGA-EQ-8122-01 16 82131837 82131837 G A HSD17B2 Silent p.P320P 0.11 TCGA-EQ-8122-01 16 88779791 88779791 G A CTU2 Missense_Mutation p.R270H 0.26 deleterious(0) probably_damaging(0.994) TCGA-EQ-8122-01 17 21319567 21319567 G A KCNJ12 Missense_Mutation p.A305T 0.04 tolerated(0.16) probably_damaging(0.977) TCGA-EQ-8122-01 17 26110016 26110016 C T NOS2 Missense_Mutation p.R195H 0.05 deleterious(0) possibly_damaging(0.704) TCGA-EQ-8122-01 17 33806825 33806825 G A SLFN12L Missense_Mutation p.P135L 0.53 tolerated(1) benign(0) TCGA-EQ-8122-01 17 34958270 34958270 A G MRM1 Missense_Mutation p.T11A 0.06 tolerated_low_confidence(0.14) benign(0.002) TCGA-EQ-8122-01 17 36485646 36485646 G A GPR179 Missense_Mutation p.T1269M 0.13 tolerated(0.26) benign(0) TCGA-EQ-8122-01 17 38065247 38065254 CTCGATAG - GSDMB Frame_Shift_Del p.Y207Kfs*73 0.22 TCGA-EQ-8122-01 17 38318390 38318390 C T CASC3 Nonsense_Mutation p.Q198* 0.93 TCGA-EQ-8122-01 17 38319064 38319064 C T CASC3 Missense_Mutation p.S232F 0.90 deleterious(0) probably_damaging(0.981) TCGA-EQ-8122-01 17 38319117 38319117 C T CASC3 Missense_Mutation p.P250S 0.91 tolerated(0.12) benign(0.178) TCGA-EQ-8122-01 17 38323756 38323756 C T CASC3 Silent p.V514V 0.80 TCGA-EQ-8122-01 17 38323757 38323757 C T CASC3 Nonsense_Mutation p.Q515* 0.79 TCGA-EQ-8122-01 17 38323782 38323782 C T CASC3 Missense_Mutation p.S523L 0.85 deleterious(0) probably_damaging(0.993) TCGA-EQ-8122-01 17 38323785 38323785 C T CASC3 Missense_Mutation p.S524F 0.85 deleterious(0) probably_damaging(0.949) TCGA-EQ-8122-01 17 38323834 38323834 C T CASC3 Silent p.I540I 0.89 TCGA-EQ-8122-01 17 38323862 38323862 C T CASC3 Missense_Mutation p.P550S 0.88 tolerated(0.05) benign(0.077) TCGA-EQ-8122-01 17 38324513 38324513 C T CASC3 Missense_Mutation p.P603L 0.90 deleterious(0) probably_damaging(0.999) TCGA-EQ-8122-01 17 38324586 38324586 C T CASC3 Silent p.V627V 0.91 TCGA-EQ-8122-01 17 38324639 38324639 C T CASC3 Missense_Mutation p.P645L 0.91 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-EQ-8122-01 17 38325584 38325584 C T CASC3 Missense_Mutation p.S658L 0.93 deleterious(0) benign(0.37) TCGA-EQ-8122-01 17 38325681 38325681 C T CASC3 Silent p.I690I 0.92 TCGA-EQ-8122-01 17 38458232 38458232 C G CDC6 Missense_Mutation p.I554M 0.33 deleterious(0) probably_damaging(0.98) TCGA-EQ-8122-01 17 38991176 38991176 C G TMEM99 Missense_Mutation p.F136L 0.03 deleterious_low_confidence(0) benign(0.294) TCGA-EQ-8122-01 17 39274204 39274204 G T KRTAP4-11 Missense_Mutation p.P122T 0.58 deleterious(0.01) unknown(0) TCGA-EQ-8122-01 17 39888482 39888482 C T HAP1 Silent p.E238E 0.85 TCGA-EQ-8122-01 17 39890671 39890671 C T HAP1 Silent p.S72S 0.87 TCGA-EQ-8122-01 17 39998198 39998198 G A KLHL10 Silent p.P106P 0.14 TCGA-EQ-8122-01 17 40001590 40001590 G T KLHL10 Missense_Mutation p.W299C 0.18 deleterious(0) probably_damaging(0.996) TCGA-EQ-8122-01 17 43220904 43220904 G A ACBD4 Missense_Mutation p.G308S 0.39 deleterious_low_confidence(0) probably_damaging(0.97) TCGA-EQ-8122-01 17 613826 613826 G A VPS53 Nonsense_Mutation p.R39* 0.22 TCGA-EQ-8122-01 17 695399 695399 C T RNMTL1 3'UTR 0.50 TCGA-EQ-8122-01 17 7577141 7577141 C - TP53 Frame_Shift_Del p.G266Dfs*79 0.50 TCGA-EQ-8122-01 17 79167790 79167790 G A AZI1 Missense_Mutation p.R753W 0.30 deleterious(0) probably_damaging(1) TCGA-EQ-8122-01 17 80279994 80279994 A T SECTM1 3'UTR 0.14 TCGA-EQ-8122-01 18 28914024 28914024 C T DSG1 Silent p.L288L 0.23 TCGA-EQ-8122-01 18 48703233 48703233 C T MEX3C Missense_Mutation p.E490K 0.19 deleterious(0.04) benign(0.129) TCGA-EQ-8122-01 18 7044734 7044734 G A LAMA1 Silent p.G321G 0.08 TCGA-EQ-8122-01 18 70526079 70526079 G A NETO1 Nonsense_Mutation p.R151* 0.67 TCGA-EQ-8122-01 18 77891037 77891037 G T ADNP2 Missense_Mutation p.G54C 0.12 deleterious(0.04) probably_damaging(0.971) TCGA-EQ-8122-01 18 8813126 8813126 C T SOGA2 Silent p.S918S 0.34 TCGA-EQ-8122-01 19 14273897 14273897 C T LPHN1 Missense_Mutation p.S244N 0.10 deleterious(0.04) possibly_damaging(0.836) TCGA-EQ-8122-01 19 16243039 16243039 G A RAB8A Silent p.Q183Q 0.30 TCGA-EQ-8122-01 19 17476312 17476312 G A PLVAP Missense_Mutation p.A321V 0.11 tolerated(0.08) benign(0.212) TCGA-EQ-8122-01 19 33333149 33333149 C G SLC7A9 Missense_Mutation p.W383C 0.09 deleterious(0) probably_damaging(1) TCGA-EQ-8122-01 19 34706038 34706038 G C LSM14A Missense_Mutation p.S183T 0.11 tolerated(0.15) benign(0.044) TCGA-EQ-8122-01 19 39207822 39207822 G A ACTN4 Missense_Mutation p.D337N 0.09 tolerated(0.42) probably_damaging(0.995) TCGA-EQ-8122-01 19 39423241 39423241 G C MRPS12 Missense_Mutation p.Q106H 0.05 tolerated(0.5) benign(0.001) TCGA-EQ-8122-01 19 39994903 39994903 C T DLL3 Missense_Mutation p.P282L 0.23 deleterious(0) probably_damaging(1) TCGA-EQ-8122-01 19 45573800 45573800 G A CLASRP Missense_Mutation p.E655K 0.08 deleterious_low_confidence(0.01) unknown(0) TCGA-EQ-8122-01 19 47112465 47112465 G A CALM3 3'UTR 0.24 TCGA-EQ-8122-01 19 52272135 52272135 C T FPR2 Missense_Mutation p.T75M 0.22 tolerated(0.13) benign(0.378) TCGA-EQ-8122-01 19 9068981 9068981 G A MUC16 Silent p.I6155I 0.51 TCGA-EQ-8122-01 1 100696418 100696418 G T DBT Missense_Mutation p.Q102K 0.21 deleterious(0.05) possibly_damaging(0.88) TCGA-EQ-8122-01 1 103348865 103348865 C T COL11A1 Missense_Mutation p.E1621K 0.16 unknown(0) TCGA-EQ-8122-01 1 103480076 103480076 C A COL11A1 Missense_Mutation p.Q521H 0.32 probably_damaging(0.998) TCGA-EQ-8122-01 1 116534717 116534717 C T SLC22A15 Silent p.D51D 0.15 TCGA-EQ-8122-01 1 120278013 120278013 C T PHGDH Missense_Mutation p.R247W 0.15 deleterious(0.05) probably_damaging(0.944) TCGA-EQ-8122-01 1 151536460 151536460 C T TUFT1 Silent p.I106I 0.31 TCGA-EQ-8122-01 1 152328723 152328723 T C FLG2 Silent p.G513G 0.07 TCGA-EQ-8122-01 1 158632694 158632694 T C SPTA1 Silent p.E754E 0.21 TCGA-EQ-8122-01 1 158735928 158735928 G A OR6N1 Missense_Mutation p.P182L 0.08 tolerated(0.4) benign(0.398) TCGA-EQ-8122-01 1 160109759 160109759 C T ATP1A2 Missense_Mutation p.R1007W 0.12 deleterious(0) probably_damaging(0.98) TCGA-EQ-8122-01 1 171083449 171083449 C A FMO3 Missense_Mutation p.A377D 0.08 deleterious(0) possibly_damaging(0.864) TCGA-EQ-8122-01 1 171621299 171621299 A T MYOC Silent p.V151V 0.39 TCGA-EQ-8122-01 1 177199003 177199003 C T BRINP2 5'UTR 0.08 TCGA-EQ-8122-01 1 197404649 197404650 AG - CRB1 Frame_Shift_Del p.H1221Pfs*10 0.25 TCGA-EQ-8122-01 1 207646324 207646324 G A CR2 Missense_Mutation p.C593Y 0.11 deleterious(0) probably_damaging(0.998) TCGA-EQ-8122-01 1 21903107 21903107 C T ALPL Nonsense_Mutation p.R428* 0.30 TCGA-EQ-8122-01 1 221053383 221053383 G T HLX Nonsense_Mutation p.E62* 0.52 TCGA-EQ-8122-01 1 231906801 231906801 C T DISC1 Missense_Mutation p.P540L 0.21 deleterious(0) possibly_damaging(0.604) TCGA-EQ-8122-01 1 237947931 237947931 C T RYR2 Missense_Mutation p.R4307C 0.29 possibly_damaging(0.731) TCGA-EQ-8122-01 1 247920903 247920903 T C OR1C1 Missense_Mutation p.E269G 0.19 tolerated(0.37) benign(0.26) TCGA-EQ-8122-01 1 40872476 40872476 C A SMAP2 Missense_Mutation p.L58M 0.36 deleterious(0) probably_damaging(0.999) TCGA-EQ-8122-01 1 46827504 46827504 C T NSUN4 Missense_Mutation p.R381C 0.29 tolerated(0.13) benign(0.006) TCGA-EQ-8122-01 1 6257728 6257728 A C RPL22 Missense_Mutation p.M34R 0.14 deleterious(0) possibly_damaging(0.716) TCGA-EQ-8122-01 1 70488840 70488840 G T LRRC7 Missense_Mutation p.G488V 0.38 tolerated(0.15) benign(0.296) TCGA-EQ-8122-01 1 7913104 7913104 G T UTS2 Intron 0.48 TCGA-EQ-8122-01 1 84348736 84348736 A G TTLL7 Missense_Mutation p.L818P 0.18 deleterious(0) probably_damaging(0.999) TCGA-EQ-8122-01 1 981547 981547 G A AGRN Missense_Mutation p.G938E 0.11 deleterious(0) probably_damaging(0.982) TCGA-EQ-8122-01 20 35207299 35207299 G A TGIF2 Missense_Mutation p.R41H 0.05 deleterious(0.05) benign(0.391) TCGA-EQ-8122-01 20 39742659 39742659 C T TOP1 Missense_Mutation p.T501I 0.32 deleterious(0) probably_damaging(0.998) TCGA-EQ-8122-01 20 42164793 42164793 C T L3MBTL1 Missense_Mutation p.A639V 0.10 deleterious(0.01) benign(0.13) TCGA-EQ-8122-01 20 43922383 43922383 C A MATN4 3'UTR 0.19 TCGA-EQ-8122-01 20 48522761 48522761 C T SPATA2 Missense_Mutation p.G320S 0.31 tolerated(0.41) probably_damaging(0.999) TCGA-EQ-8122-01 20 52199377 52199377 G A ZNF217 5'UTR 0.23 TCGA-EQ-8122-01 20 55908246 55908246 T A SPO11 Missense_Mutation p.F83Y 0.30 tolerated(0.32) benign(0.063) TCGA-EQ-8122-01 20 57430309 57430309 G C GNAS Missense_Mutation p.K663N 0.16 deleterious(0.01) probably_damaging(0.966) TCGA-EQ-8122-01 21 47421938 47421938 G A COL6A1 Missense_Mutation p.V674M 0.32 deleterious(0) probably_damaging(0.999) TCGA-EQ-8122-01 22 37603003 37603003 G A SSTR3 Silent p.N280N 0.06 TCGA-EQ-8122-01 22 45599792 45599792 C T KIAA0930 Silent p.T202T 0.26 TCGA-EQ-8122-01 2 113950928 113950928 G A PSD4 Silent p.P671P 0.30 TCGA-EQ-8122-01 2 127451484 127451484 A T GYPC Missense_Mutation p.T51S 0.12 tolerated(0.6) benign(0.004) TCGA-EQ-8122-01 2 152396912 152396912 A G NEB Silent p.V6946V 0.21 TCGA-EQ-8122-01 2 163174424 163174424 T G IFIH1 Silent p.R132R 0.06 TCGA-EQ-8122-01 2 1652755 1652755 G A PXDN Missense_Mutation p.R933C 0.31 deleterious(0.01) probably_damaging(0.969) TCGA-EQ-8122-01 2 179432605 179432605 G A TTN Missense_Mutation p.A26085V 0.09 TCGA-EQ-8122-01 2 210558914 210558914 C A MAP2 Missense_Mutation p.H674N 0.11 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EQ-8122-01 2 219269302 219269302 G A CTDSP1 3'UTR 0.21 TCGA-EQ-8122-01 2 231742258 231742258 G A ITM2C Silent p.T235T 0.65 TCGA-EQ-8122-01 2 39088395 39088395 C T DHX57 Missense_Mutation p.R386H 0.25 tolerated(0.41) probably_damaging(0.993) TCGA-EQ-8122-01 2 43980895 43980895 C A PLEKHH2 Missense_Mutation p.S1264Y 0.27 deleterious(0) benign(0.166) TCGA-EQ-8122-01 2 51255158 51255158 C T NRXN1 Missense_Mutation p.R85H 0.54 tolerated(0.18) benign(0.001) TCGA-EQ-8122-01 2 60679623 60679623 A T BCL11A 3'Flank 0.68 TCGA-EQ-8122-01 2 74729922 74729924 CCT - LBX2 In_Frame_Del p.G22del 0.41 TCGA-EQ-8122-01 2 97559780 97559780 C T FAM178B Silent p.S553S 0.56 TCGA-EQ-8122-01 3 100413885 100413885 G C GPR128 3'UTR 0.14 TCGA-EQ-8122-01 3 100962804 100962804 C T IMPG2 Missense_Mutation p.E791K 0.28 tolerated(0.21) benign(0.021) TCGA-EQ-8122-01 3 105253671 105253671 G A ALCAM Missense_Mutation p.A238T 0.35 tolerated(0.32) benign(0.001) TCGA-EQ-8122-01 3 108388536 108388536 G A DZIP3 Missense_Mutation p.R811H 0.25 deleterious(0.05) benign(0.255) TCGA-EQ-8122-01 3 119367120 119367120 G A POPDC2 Silent p.D332D 0.33 TCGA-EQ-8122-01 3 126749100 126749100 G A PLXNA1 Silent p.K1692K 0.17 TCGA-EQ-8122-01 3 129373845 129373845 G A TMCC1 Missense_Mutation p.A538V 0.35 deleterious(0.04) benign(0.349) TCGA-EQ-8122-01 3 195395451 195395451 C T SDHAP2 RNA 0.08 TCGA-EQ-8122-01 3 33558542 33558542 A T CLASP2 Silent p.S1312S 0.25 TCGA-EQ-8122-01 3 44906554 44906554 A G TMEM42 Missense_Mutation p.Y121C 0.27 deleterious(0) probably_damaging(0.939) TCGA-EQ-8122-01 3 52522419 52522419 G A NISCH Missense_Mutation p.V971M 0.05 deleterious(0.01) probably_damaging(0.98) TCGA-EQ-8122-01 4 101946997 101946997 A C PPP3CA 3'UTR 0.23 TCGA-EQ-8122-01 4 156716576 156716576 T C GUCY1B3 Silent p.S270S 0.22 TCGA-EQ-8122-01 4 156721189 156721189 T C GUCY1B3 Silent p.L380L 0.07 TCGA-EQ-8122-01 4 183710542 183710542 G T TENM3 Missense_Mutation p.K1867N 0.13 deleterious(0.04) possibly_damaging(0.788) TCGA-EQ-8122-01 4 73013068 73013068 A T NPFFR2 Nonsense_Mutation p.K370* 0.20 TCGA-EQ-8122-01 5 140908321 140908321 G A DIAPH1 Missense_Mutation p.A989V 0.33 possibly_damaging(0.831) TCGA-EQ-8122-01 5 150885379 150885379 G T FAT2 Missense_Mutation p.P4266H 0.26 possibly_damaging(0.901) TCGA-EQ-8122-01 5 180039518 180039518 G A FLT4 Silent p.G1175G 0.13 TCGA-EQ-8122-01 5 23527808 23527808 G A PRDM9 Missense_Mutation p.D871N 0.09 tolerated(0.51) benign(0.002) TCGA-EQ-8122-01 5 33937024 33937024 C T RXFP3 Missense_Mutation p.A60V 0.05 tolerated(0.07) benign(0.084) TCGA-EQ-8122-01 5 38463963 38463963 A T EGFLAM Missense_Mutation p.N977Y 0.08 tolerated(0.09) possibly_damaging(0.836) TCGA-EQ-8122-01 5 53751900 53751900 T A HSPB3 Missense_Mutation p.L94Q 0.39 deleterious(0) probably_damaging(1) TCGA-EQ-8122-01 6 111210105 111210106 AT - AMD1 Frame_Shift_Del p.C82Wfs*17 0.16 TCGA-EQ-8122-01 6 152651714 152651714 G A SYNE1 Silent p.T4702T 0.11 TCGA-EQ-8122-01 6 161469819 161469819 G A MAP3K4 Missense_Mutation p.G172E 0.10 tolerated(0.12) possibly_damaging(0.616) TCGA-EQ-8122-01 6 26157126 26157126 G T HIST1H1E Missense_Mutation p.A170S 0.19 tolerated(0.21) unknown(0) TCGA-EQ-8122-01 6 28478622 28478622 G A GPX6 Silent p.N49N 0.20 TCGA-EQ-8122-01 6 2890467 2890467 G A SERPINB9 Missense_Mutation p.P354L 0.19 deleterious(0) probably_damaging(1) TCGA-EQ-8122-01 6 32146405 32146405 C T RNF5 Silent p.V39V 0.26 TCGA-EQ-8122-01 6 32975853 32975853 C T HLA-DOA Missense_Mutation p.A90T 0.09 deleterious(0.01) benign(0.07) TCGA-EQ-8122-01 6 33048644 33048644 G A HLA-DPB1 Missense_Mutation p.R99Q 0.06 deleterious(0.04) benign(0.252) TCGA-EQ-8122-01 6 33272850 33272850 G A TAPBP Nonsense_Mutation p.Q262* 0.09 TCGA-EQ-8122-01 6 42665921 42665921 G A PRPH2 3'UTR 0.13 TCGA-EQ-8122-01 6 43251385 43251385 C T TTBK1 Silent p.G969G 0.14 TCGA-EQ-8122-01 6 46845998 46845998 T C GPR116 Missense_Mutation p.Q394R 0.07 deleterious(0.02) benign(0.001) TCGA-EQ-8122-01 6 52993582 52993582 C A GCM1 Nonsense_Mutation p.G245* 0.11 TCGA-EQ-8122-01 6 75875408 75875408 C T COL12A1 Missense_Mutation p.R933H 0.11 possibly_damaging(0.79) TCGA-EQ-8122-01 7 126086384 126086384 T G GRM8 Missense_Mutation p.S825R 0.20 deleterious(0) probably_damaging(0.98) TCGA-EQ-8122-01 7 128432417 128432417 C T CCDC136 5'UTR 0.18 TCGA-EQ-8122-01 7 138447126 138447126 C T ATP6V0A4 Silent p.L157L 0.18 TCGA-EQ-8122-01 7 149486859 149486860 - C SSPO RNA 0.25 TCGA-EQ-8122-01 7 154595578 154595578 A G DPP6 Missense_Mutation p.N471S 0.09 tolerated(0.27) benign(0.013) TCGA-EQ-8122-01 7 36374696 36374696 G A KIAA0895 Missense_Mutation p.A320V 0.12 deleterious(0.01) probably_damaging(1) TCGA-EQ-8122-01 7 4116664 4116664 C T SDK1 Silent p.N1015N 0.39 TCGA-EQ-8122-01 8 122626561 122626561 C T HAS2 Missense_Mutation p.V483I 0.12 tolerated(0.72) benign(0.001) TCGA-EQ-8122-01 8 125463149 125463149 G A TRMT12 5'UTR 0.13 TCGA-EQ-8122-01 8 143958275 143958275 G A CYP11B1 Missense_Mutation p.R208W 0.19 deleterious(0) probably_damaging(0.997) TCGA-EQ-8122-01 8 145999177 145999177 G A ZNF34 Missense_Mutation p.T386I 0.39 deleterious(0) probably_damaging(0.999) TCGA-EQ-8122-01 8 2807839 2807839 A C CSMD1 Missense_Mutation p.L3410V 0.21 probably_damaging(0.982) TCGA-EQ-8122-01 8 3265646 3265646 A G CSMD1 Missense_Mutation p.S616P 0.08 possibly_damaging(0.522) TCGA-EQ-8122-01 8 48815328 48815328 T C PRKDC Missense_Mutation p.T1024A 0.09 benign(0.106) TCGA-EQ-8122-01 8 52773426 52773426 T C PCMTD1 Missense_Mutation p.T96A 0.13 deleterious(0) benign(0.394) TCGA-EQ-8122-01 8 67926745 67926745 G A PPP1R42 Missense_Mutation p.A71V 0.10 deleterious(0.01) benign(0.167) TCGA-EQ-8122-01 9 107288811 107288811 C T OR13C4 Missense_Mutation p.R227Q 0.10 deleterious(0.02) benign(0.008) TCGA-EQ-8122-01 9 117092829 117092829 C T ORM2 Missense_Mutation p.T77M 0.11 deleterious(0.01) probably_damaging(0.942) TCGA-EQ-8122-01 9 134585139 134585139 G C RAPGEF1 5'UTR 0.17 TCGA-EQ-8122-01 9 74586527 74586527 G A C9orf85 Missense_Mutation p.V106I 0.11 tolerated(0.11) benign(0.045) TCGA-EQ-8122-01 X 119761012 119761012 C T C1GALT1C1 Missense_Mutation p.E4K 0.31 deleterious(0.02) possibly_damaging(0.702) TCGA-EQ-8122-01 X 123637484 123637484 T G TENM1 Missense_Mutation p.Q1124P 0.24 deleterious(0.01) benign(0.073) TCGA-EQ-8122-01 X 125685489 125685489 C A DCAF12L1 Missense_Mutation p.G368V 0.08 deleterious(0.03) possibly_damaging(0.601) TCGA-EQ-8122-01 X 125685509 125685509 G C DCAF12L1 Missense_Mutation p.H361Q 0.07 deleterious(0.02) possibly_damaging(0.548) TCGA-EQ-8122-01 X 132161102 132161102 C T USP26 Missense_Mutation p.A383T 0.05 deleterious(0) probably_damaging(0.994) TCGA-EQ-8122-01 X 134494366 134494366 C T ZNF449 Missense_Mutation p.L308F 0.25 deleterious(0.03) possibly_damaging(0.499) TCGA-EQ-8122-01 X 135049602 135049602 A G MMGT1 Silent p.V61V 0.25 TCGA-EQ-8122-01 X 135730398 135730398 T C CD40LG 5'UTR 0.16 TCGA-EQ-8122-01 X 140271115 140271115 C T LDOC1 Missense_Mutation p.R31Q 0.12 tolerated(0.49) possibly_damaging(0.491) TCGA-EQ-8122-01 X 140993323 140993323 G A MAGEC1 Missense_Mutation p.D45N 0.19 tolerated_low_confidence(0.07) possibly_damaging(0.555) TCGA-EQ-8122-01 X 148039901 148039901 A C AFF2 Missense_Mutation p.K868T 0.09 deleterious(0.05) probably_damaging(0.998) TCGA-EQ-8122-01 X 73063082 73063082 C A XIST RNA 0.08 TCGA-EQ-8122-01 X 86067873 86067873 C A DACH2 Missense_Mutation p.Q419K 0.27 tolerated(0.48) benign(0.09) TCGA-EQ-8122-01 X 91134257 91134257 C G PCDH11X Silent p.S1006S 0.42 TCGA-EQ-8122-01 X 92927838 92927838 C A NAP1L3 Nonsense_Mutation p.E156* 0.09 TCGA-EQ-A4SO-01 10 38681011 38681011 A T SEPT7P9 RNA 0.21 TCGA-EQ-A4SO-01 10 50943164 50943164 C A OGDHL 3'UTR 0.36 TCGA-EQ-A4SO-01 10 68535241 68535241 T A CTNNA3 Missense_Mutation p.L363F 0.24 deleterious(0.01) benign(0.372) TCGA-EQ-A4SO-01 10 93392764 93392764 G A PPP1R3C 5'UTR 0.44 TCGA-EQ-A4SO-01 10 93611020 93611020 G T TNKS2 Missense_Mutation p.E914D 0.76 tolerated(0.13) probably_damaging(0.983) TCGA-EQ-A4SO-01 10 95719188 95719188 C T PIPSL RNA 0.59 TCGA-EQ-A4SO-01 11 106647285 106647285 G T GUCY1A2 Nonsense_Mutation p.Y572* 0.22 TCGA-EQ-A4SO-01 11 113935245 113935245 T A ZBTB16 Missense_Mutation p.V408E 0.42 tolerated(0.65) benign(0.024) TCGA-EQ-A4SO-01 11 114271109 114271109 C T C11orf71 5'UTR 0.21 TCGA-EQ-A4SO-01 11 115049487 115049487 C A CADM1 Missense_Mutation p.A363S 0.31 tolerated(0.06) benign(0.186) TCGA-EQ-A4SO-01 11 116734399 116734399 G C SIK3 Missense_Mutation p.I590M 0.38 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-EQ-A4SO-01 11 118942531 118942531 C T VPS11 Missense_Mutation p.R287C 0.38 deleterious(0) possibly_damaging(0.711) TCGA-EQ-A4SO-01 11 123894205 123894205 T A OR10G9 Silent p.T162T 0.41 TCGA-EQ-A4SO-01 11 124440783 124440783 C A OR8A1 Missense_Mutation p.F273L 0.43 deleterious(0) probably_damaging(0.999) TCGA-EQ-A4SO-01 11 124543599 124543599 G C SIAE Silent p.V2V 0.44 TCGA-EQ-A4SO-01 11 20181547 20181547 C T DBX1 Silent p.L108L 0.31 TCGA-EQ-A4SO-01 11 46637422 46637422 T C HARBI1 Silent p.P122P 0.42 TCGA-EQ-A4SO-01 11 46747627 46747627 A T F2 Missense_Mutation p.N260Y 0.40 deleterious(0) probably_damaging(0.999) TCGA-EQ-A4SO-01 11 55321947 55321947 G A OR4C15 Missense_Mutation p.M55I 0.40 deleterious_low_confidence(0.01) probably_damaging(0.971) TCGA-EQ-A4SO-01 11 57148219 57148219 C G PRG3 5'UTR 0.27 TCGA-EQ-A4SO-01 11 5878629 5878629 C T OR52E8 Missense_Mutation p.G102S 0.36 tolerated(0.34) benign(0.011) TCGA-EQ-A4SO-01 11 64081441 64081441 G A ESRRA Missense_Mutation p.C115Y 0.43 deleterious(0) probably_damaging(0.999) TCGA-EQ-A4SO-01 11 65638628 65638628 C G EFEMP2 Missense_Mutation p.D123H 0.11 deleterious(0.01) possibly_damaging(0.838) TCGA-EQ-A4SO-01 11 68506100 68506105 CGTGAA - MTL5 Intron 0.38 TCGA-EQ-A4SO-01 12 113909163 113909163 C G LHX5 Missense_Mutation p.E47D 0.38 tolerated(0.35) benign(0.019) TCGA-EQ-A4SO-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.25 deleterious(0) possibly_damaging(0.479) TCGA-EQ-A4SO-01 12 48132941 48132941 G A RAPGEF3 Missense_Mutation p.P816S 0.37 deleterious(0) probably_damaging(0.997) TCGA-EQ-A4SO-01 12 49373285 49373285 C - WNT1 Frame_Shift_Del p.T48Qfs*17 0.19 TCGA-EQ-A4SO-01 12 49724003 49724003 G A TROAP Missense_Mutation p.G459R 0.32 deleterious(0) probably_damaging(0.978) TCGA-EQ-A4SO-01 12 53647296 53647296 A G MFSD5 Missense_Mutation p.Y333C 0.50 deleterious(0) probably_damaging(0.936) TCGA-EQ-A4SO-01 12 53880372 53880372 G C MAP3K12 Missense_Mutation p.D160E 0.39 tolerated(0.88) benign(0.043) TCGA-EQ-A4SO-01 12 56552184 56552184 A G MYL6 5'UTR 0.42 TCGA-EQ-A4SO-01 12 57572689 57572689 G C LRP1 Missense_Mutation p.E1541D 0.41 benign(0.145) TCGA-EQ-A4SO-01 12 6647143 6647156 TTTGTCAAGCTCAT - GAPDH Frame_Shift_Del p.V308Lfs*3 0.58 TCGA-EQ-A4SO-01 12 78415549 78415549 A G NAV3 Missense_Mutation p.T644A 0.24 tolerated(0.06) benign(0.002) TCGA-EQ-A4SO-01 12 8203212 8203212 C T FOXJ2 Silent p.R544R 0.21 TCGA-EQ-A4SO-01 13 107822920 107822920 C G FAM155A Silent p.S434S 0.38 TCGA-EQ-A4SO-01 13 23930063 23930063 A G SACS Missense_Mutation p.C230R 0.42 probably_damaging(0.997) TCGA-EQ-A4SO-01 13 27333438 27333438 A C GPR12 Missense_Mutation p.V176G 0.35 deleterious(0) benign(0.201) TCGA-EQ-A4SO-01 14 22919106 22919106 A C TRDJ1 Missense_Mutation p.K9N 0.38 unknown(0) TCGA-EQ-A4SO-01 14 35778166 35778166 C A PSMA6 Missense_Mutation p.T73N 0.32 deleterious(0.03) benign(0.214) TCGA-EQ-A4SO-01 14 44975763 44975763 A G FSCB Missense_Mutation p.M143T 0.37 deleterious(0.04) possibly_damaging(0.896) TCGA-EQ-A4SO-01 14 51383422 51383422 C T PYGL Missense_Mutation p.A344T 0.26 tolerated(0.1) possibly_damaging(0.56) TCGA-EQ-A4SO-01 14 76964821 76964821 A G ESRRB Intron 0.57 TCGA-EQ-A4SO-01 14 93944063 93944063 C A UNC79 Missense_Mutation p.P26Q 0.59 deleterious(0) probably_damaging(0.999) TCGA-EQ-A4SO-01 14 94395422 94395423 AG - FAM181A Frame_Shift_Del p.K327Gfs*118 0.38 TCGA-EQ-A4SO-01 15 23931799 23931799 C T NDN Missense_Mutation p.G189D 0.36 deleterious(0) probably_damaging(1) TCGA-EQ-A4SO-01 15 28263631 28263631 C A OCA2 Missense_Mutation p.G240V 0.53 tolerated(0.33) benign(0.005) TCGA-EQ-A4SO-01 15 29393862 29393862 G T APBA2 Missense_Mutation p.V467L 0.28 tolerated(0.2) possibly_damaging(0.557) TCGA-EQ-A4SO-01 15 62173134 62173134 G A VPS13C Nonsense_Mutation p.Q3266* 0.55 TCGA-EQ-A4SO-01 15 91020002 91020002 G C IQGAP1 Missense_Mutation p.E964D 0.39 tolerated(0.09) benign(0.004) TCGA-EQ-A4SO-01 16 1308365 1308365 G C TPSD1 Silent p.V239V 0.37 TCGA-EQ-A4SO-01 16 15931924 15931924 C A MYH11 Silent p.L62L 0.38 TCGA-EQ-A4SO-01 16 2236780 2236780 C A CASKIN1 Missense_Mutation p.D326Y 0.34 probably_damaging(1) TCGA-EQ-A4SO-01 16 2811985 2811985 A G SRRM2 Missense_Mutation p.S486G 0.30 unknown(0) TCGA-EQ-A4SO-01 16 30779423 30779423 G C RNF40 Splice_Site p.X518_splice 0.62 TCGA-EQ-A4SO-01 16 47533725 47533725 A C PHKB Silent p.T75T 0.21 TCGA-EQ-A4SO-01 16 56226557 56226557 C G GNAO1 Intron 0.64 TCGA-EQ-A4SO-01 16 67100583 67100583 A C CBFB Splice_Site p.X95_splice 0.81 TCGA-EQ-A4SO-01 16 81303874 81303888 CATCGTGTTTGACGT - BCMO1 In_Frame_Del p.V320_I324del 0.59 TCGA-EQ-A4SO-01 16 84229450 84229450 C T ADAD2 Missense_Mutation p.P443L 0.62 tolerated(1) benign(0.001) TCGA-EQ-A4SO-01 17 18205295 18205295 A T TOP3A Silent p.T273T 0.21 TCGA-EQ-A4SO-01 17 19015735 19015735 C G SNORD3D RNA 0.18 TCGA-EQ-A4SO-01 17 2226713 2226713 T C TSR1 3'UTR 0.53 TCGA-EQ-A4SO-01 17 37187738 37187738 A C CTD-2206N4.2 5'Flank 0.34 TCGA-EQ-A4SO-01 17 38551736 38551736 T G TOP2A Missense_Mutation p.K1259T 0.25 tolerated(0.16) benign(0.017) TCGA-EQ-A4SO-01 17 40847844 40847844 G C CNTNAP1 Missense_Mutation p.V1100L 0.35 tolerated(0.21) possibly_damaging(0.897) TCGA-EQ-A4SO-01 17 42340029 42340029 G A SLC4A1 Silent p.P27P 0.38 TCGA-EQ-A4SO-01 17 44954024 44954024 C T WNT9B Silent p.C338C 0.27 TCGA-EQ-A4SO-01 17 45695716 45695716 C G NPEPPS Missense_Mutation p.L766V 0.44 tolerated(0.24) possibly_damaging(0.777) TCGA-EQ-A4SO-01 17 45755730 45755730 C G KPNB1 Silent p.A768A 0.37 TCGA-EQ-A4SO-01 17 45893948 45893948 G C OSBPL7 Missense_Mutation p.F303L 0.42 tolerated(0.38) probably_damaging(0.986) TCGA-EQ-A4SO-01 17 46134756 46134757 - C NFE2L1 Frame_Shift_Ins p.A291Cfs*19 0.23 TCGA-EQ-A4SO-01 17 4701662 4701662 T A PSMB6 Missense_Mutation p.V222E 0.39 deleterious(0.01) benign(0.252) TCGA-EQ-A4SO-01 17 4701676 4701676 C T PSMB6 Nonsense_Mutation p.Q227* 0.39 TCGA-EQ-A4SO-01 17 51902390 51902390 C T KIF2B Missense_Mutation p.L666F 0.29 tolerated(0.09) benign(0.025) TCGA-EQ-A4SO-01 17 60042586 60042586 G C MED13 Nonsense_Mutation p.S1542* 0.41 TCGA-EQ-A4SO-01 17 61613061 61613061 C T KCNH6 Missense_Mutation p.A378V 0.40 tolerated(0.18) probably_damaging(0.955) TCGA-EQ-A4SO-01 17 72368741 72368741 G C GPR142 3'Flank 0.50 TCGA-EQ-A4SO-01 17 80545096 80545096 C T FOXK2 Silent p.N578N 0.58 TCGA-EQ-A4SO-01 18 2763719 2763723 ACCCC - SMCHD1 Frame_Shift_Del p.P1552Ffs*6 0.21 TCGA-EQ-A4SO-01 18 3126706 3126706 G A MYOM1 Missense_Mutation p.A995V 0.38 tolerated(0.36) benign(0.097) TCGA-EQ-A4SO-01 19 1041564 1041564 C G ABCA7 Missense_Mutation p.A41G 0.31 tolerated(0.35) possibly_damaging(0.771) TCGA-EQ-A4SO-01 19 12060327 12060327 A G ZNF700 Silent p.E496E 0.29 TCGA-EQ-A4SO-01 19 14104517 14104517 C T RFX1 Missense_Mutation p.A47T 0.37 deleterious_low_confidence(0.02) unknown(0) TCGA-EQ-A4SO-01 19 15367029 15367029 G T BRD4 Missense_Mutation p.Q533K 0.31 benign(0.042) TCGA-EQ-A4SO-01 19 24310227 24310227 A G ZNF254 Silent p.S475S 0.36 TCGA-EQ-A4SO-01 19 31770079 31770079 A T TSHZ3 Missense_Mutation p.I207N 0.34 deleterious(0) probably_damaging(1) TCGA-EQ-A4SO-01 19 38876924 38876924 G A GGN Silent p.P326P 0.41 TCGA-EQ-A4SO-01 19 41131900 41131900 C T LTBP4 Missense_Mutation p.P1390L 0.55 deleterious(0) probably_damaging(0.999) TCGA-EQ-A4SO-01 19 42794003 42794003 A G CIC Missense_Mutation p.D455G 0.43 benign(0.352) TCGA-EQ-A4SO-01 19 43233472 43233472 T G PSG3 Missense_Mutation p.N349T 0.38 tolerated(0.26) benign(0.021) TCGA-EQ-A4SO-01 19 49254277 49254277 G C FUT1 Missense_Mutation p.R88G 0.23 deleterious(0.01) probably_damaging(1) TCGA-EQ-A4SO-01 19 50906310 50906310 G T POLD1 Missense_Mutation p.G324V 0.44 deleterious(0) probably_damaging(1) TCGA-EQ-A4SO-01 19 55915847 55915847 C G UBE2S Splice_Site p.X51_splice 0.32 TCGA-EQ-A4SO-01 19 56410202 56410202 A C NLRP13 Missense_Mutation p.L964R 0.40 deleterious(0) benign(0.44) TCGA-EQ-A4SO-01 19 8999536 8999536 C A MUC16 Missense_Mutation p.V13547L 0.35 probably_damaging(0.998) TCGA-EQ-A4SO-01 19 9090173 9090173 G T MUC16 Missense_Mutation p.P548T 0.43 unknown(0) TCGA-EQ-A4SO-01 1 1328771 1328804 CTCACCATGAGGTCTGGACCAGGTGTTGGTTACG - CCNL2 Splice_Site p.X211_splice 0.48 TCGA-EQ-A4SO-01 1 151149066 151149066 C A VPS72 3'UTR 0.49 TCGA-EQ-A4SO-01 1 152085471 152085471 G T TCHH Missense_Mutation p.F74L 0.52 unknown(0) TCGA-EQ-A4SO-01 1 152277911 152277911 C A FLG Missense_Mutation p.A3151S 0.48 unknown(0) TCGA-EQ-A4SO-01 1 152280891 152280891 C T FLG Silent p.S2157S 0.27 TCGA-EQ-A4SO-01 1 152732601 152732601 C T KPRP Silent p.S179S 0.20 TCGA-EQ-A4SO-01 1 160262393 160262393 T C COPA Silent p.V956V 0.20 TCGA-EQ-A4SO-01 1 160325716 160325728 TTCAGCGACACAG - NCSTN Frame_Shift_Del p.S508Rfs*15 0.20 TCGA-EQ-A4SO-01 1 186123065 186123065 T C HMCN1 Missense_Mutation p.Y5068H 0.50 probably_damaging(0.979) TCGA-EQ-A4SO-01 1 196928061 196928061 A T CFHR2 Nonsense_Mutation p.K222* 0.20 TCGA-EQ-A4SO-01 1 197313456 197313456 G T CRB1 Missense_Mutation p.C233F 0.04 deleterious(0) probably_damaging(1) TCGA-EQ-A4SO-01 1 204412703 204412703 C T PIK3C2B Missense_Mutation p.D964N 0.50 deleterious(0.03) benign(0.444) TCGA-EQ-A4SO-01 1 205066019 205066019 G C RBBP5 Nonsense_Mutation p.S396* 0.37 TCGA-EQ-A4SO-01 1 206906085 206906085 C T MAPKAPK2 3'UTR 0.31 TCGA-EQ-A4SO-01 1 221054609 221054609 G T HLX Missense_Mutation p.Q222H 0.18 tolerated(0.07) benign(0.006) TCGA-EQ-A4SO-01 1 221879731 221879731 C A DUSP10 Missense_Mutation p.G297W 0.65 tolerated(0.07) benign(0.293) TCGA-EQ-A4SO-01 1 223176630 223176630 C T DISP1 Nonsense_Mutation p.R631* 0.20 TCGA-EQ-A4SO-01 1 226924068 226924068 G A ITPKB Silent p.R364R 0.19 TCGA-EQ-A4SO-01 1 228034039 228034039 T G PRSS38 3'UTR 0.36 TCGA-EQ-A4SO-01 1 229577209 229577209 A C NUP133 3'UTR 0.17 TCGA-EQ-A4SO-01 1 231047269 231047269 G C TTC13 Missense_Mutation p.I752M 0.16 deleterious(0.03) possibly_damaging(0.766) TCGA-EQ-A4SO-01 1 237666797 237666797 A G RYR2 Missense_Mutation p.T869A 0.19 possibly_damaging(0.872) TCGA-EQ-A4SO-01 1 237947675 237947675 C T RYR2 Silent p.S4221S 0.51 TCGA-EQ-A4SO-01 1 247013345 247013345 G C AHCTF1 Missense_Mutation p.S1997C 0.06 deleterious(0.01) possibly_damaging(0.779) TCGA-EQ-A4SO-01 1 247835974 247835974 A T OR13G1 Missense_Mutation p.C124S 0.24 deleterious(0.01) probably_damaging(0.994) TCGA-EQ-A4SO-01 1 31345902 31345902 T G SDC3 3'Flank 0.83 TCGA-EQ-A4SO-01 1 40954867 40954867 C T ZFP69 Silent p.Y109Y 0.18 TCGA-EQ-A4SO-01 1 44878012 44878012 C A RNF220 Silent p.G81G 0.33 TCGA-EQ-A4SO-01 1 50666792 50666792 G A ELAVL4 Missense_Mutation p.R365H 0.33 tolerated(0.16) probably_damaging(0.919) TCGA-EQ-A4SO-01 1 65339110 65339111 - T JAK1 Frame_Shift_Ins p.I143Dfs*9 0.61 TCGA-EQ-A4SO-01 1 68615882 68615882 C T WLS Missense_Mutation p.E319K 0.67 deleterious(0) probably_damaging(0.999) TCGA-EQ-A4SO-01 1 89728058 89728058 T C GBP5 Missense_Mutation p.K498E 0.66 tolerated(1) benign(0.01) TCGA-EQ-A4SO-01 20 23586247 23586247 C T CST9 Silent p.K85K 0.38 TCGA-EQ-A4SO-01 20 33591321 33591321 C T TRPC4AP Silent p.E716E 0.25 TCGA-EQ-A4SO-01 20 34079123 34079123 A C CEP250 Missense_Mutation p.Q947P 0.30 probably_damaging(0.999) TCGA-EQ-A4SO-01 20 35075102 35075102 A G DLGAP4 Silent p.V470V 0.33 TCGA-EQ-A4SO-01 20 36841769 36841769 G C KIAA1755 Missense_Mutation p.P1093R 0.28 tolerated(0.05) possibly_damaging(0.839) TCGA-EQ-A4SO-01 20 43940873 43940873 G A RBPJL Missense_Mutation p.A153T 0.40 deleterious(0.01) benign(0.277) TCGA-EQ-A4SO-01 20 48098857 48098857 C T KCNB1 Missense_Mutation p.R54H 0.32 tolerated(0.55) probably_damaging(1) TCGA-EQ-A4SO-01 21 34924118 34924118 A G SON Missense_Mutation p.M861V 0.37 benign(0.019) TCGA-EQ-A4SO-01 22 39883695 39883695 G A MGAT3 Missense_Mutation p.G115S 0.50 deleterious_low_confidence(0.04) possibly_damaging(0.453) TCGA-EQ-A4SO-01 2 10729750 10729750 C T NOL10 Missense_Mutation p.R517K 0.59 tolerated(0.69) benign(0.003) TCGA-EQ-A4SO-01 2 109398786 109398786 C G RANBP2 Missense_Mutation p.T2988S 0.31 tolerated(0.3) possibly_damaging(0.783) TCGA-EQ-A4SO-01 2 125504947 125504947 C T CNTNAP5 Missense_Mutation p.A739V 0.35 deleterious(0) possibly_damaging(0.459) TCGA-EQ-A4SO-01 2 152376211 152376211 G C NEB Silent p.L7517L 0.34 TCGA-EQ-A4SO-01 2 158272554 158272554 G A CYTIP Nonsense_Mutation p.R239* 0.38 TCGA-EQ-A4SO-01 2 160958234 160958234 G C ITGB6 3'UTR 0.56 TCGA-EQ-A4SO-01 2 179437941 179437941 A - TTN Frame_Shift_Del p.S24306Rfs*97 0.23 TCGA-EQ-A4SO-01 2 179571225 179571250 CTTCCTTTCATCCACCTGTAAGTTAA - TTN Frame_Shift_Del p.V9784Efs*6 0.37 TCGA-EQ-A4SO-01 2 187627259 187627264 GCATCA - FAM171B In_Frame_Del p.H731_Q732del 0.31 TCGA-EQ-A4SO-01 2 188368450 188368450 A G TFPI Missense_Mutation p.C16R 0.44 tolerated(0.09) possibly_damaging(0.653) TCGA-EQ-A4SO-01 2 189406025 189406025 G T GULP1 Missense_Mutation p.V127L 0.40 deleterious(0) probably_damaging(0.984) TCGA-EQ-A4SO-01 2 189406027 189406027 A T GULP1 Silent p.V127V 0.41 TCGA-EQ-A4SO-01 2 191922752 191922752 G A STAT4 Nonsense_Mutation p.R400* 0.33 TCGA-EQ-A4SO-01 2 196883950 196883950 C G DNAH7 Missense_Mutation p.L271F 0.29 deleterious(0.01) probably_damaging(0.989) TCGA-EQ-A4SO-01 2 202151284 202151295 ACTAAGAAAAAA - CASP8 In_Frame_Del p.R530_L533del 0.26 TCGA-EQ-A4SO-01 2 20403851 20403851 C A SDC1 Missense_Mutation p.R117L 0.35 tolerated(0.35) benign(0.011) TCGA-EQ-A4SO-01 2 32728208 32728208 C G BIRC6 Missense_Mutation p.S3135C 0.43 possibly_damaging(0.708) TCGA-EQ-A4SO-01 2 39213364 39213364 C T SOS1 Silent p.R1201R 0.32 TCGA-EQ-A4SO-01 2 54864881 54864881 C - SPTBN1 Frame_Shift_Del p.L1267Ffs*2 0.19 TCGA-EQ-A4SO-01 2 85554472 85554472 G A TGOLN2 Missense_Mutation p.P128L 0.41 deleterious(0.01) possibly_damaging(0.859) TCGA-EQ-A4SO-01 2 9528481 9528481 A G ASAP2 Missense_Mutation p.Q730R 0.41 tolerated(0.48) benign(0.091) TCGA-EQ-A4SO-01 3 122003879 122003879 C T CASR Silent p.T1036T 0.38 TCGA-EQ-A4SO-01 3 123359146 123359146 C T MYLK Missense_Mutation p.A1609T 0.29 deleterious(0) probably_damaging(0.997) TCGA-EQ-A4SO-01 3 124952748 124952748 T - ZNF148 Frame_Shift_Del p.K274Nfs*12 0.23 TCGA-EQ-A4SO-01 3 128369586 128369586 C G RPN1 Missense_Mutation p.A20P 0.38 tolerated(0.3) unknown(0) TCGA-EQ-A4SO-01 3 154024054 154024054 C T DHX36 Missense_Mutation p.E282K 0.43 deleterious(0) probably_damaging(0.96) TCGA-EQ-A4SO-01 3 39374532 39374532 T C CCR8 Missense_Mutation p.I237T 0.45 deleterious(0.03) benign(0.169) TCGA-EQ-A4SO-01 3 52255985 52255985 C T TLR9 Missense_Mutation p.G937S 0.70 tolerated(0.39) benign(0.211) TCGA-EQ-A4SO-01 3 54952777 54952777 A T LRTM1 Silent p.S249S 0.32 TCGA-EQ-A4SO-01 4 114275995 114275995 G T ANK2 Missense_Mutation p.G2074V 0.28 possibly_damaging(0.786) TCGA-EQ-A4SO-01 4 140811104 140811104 G T MAML3 Missense_Mutation p.Q496K 0.20 possibly_damaging(0.678) TCGA-EQ-A4SO-01 4 22389842 22389842 A G GPR125 Missense_Mutation p.I1151T 0.37 tolerated(0.14) benign(0.432) TCGA-EQ-A4SO-01 4 3521919 3521919 G C LRPAP1 Silent p.V117V 0.23 TCGA-EQ-A4SO-01 4 40104250 40104253 TCAA - N4BP2 Frame_Shift_Del p.N263Kfs*7 0.35 TCGA-EQ-A4SO-01 4 69403579 69403579 G C UGT2B17 Missense_Mutation p.Q453E 0.39 deleterious(0) probably_damaging(0.99) TCGA-EQ-A4SO-01 5 115249114 115249114 T G AP3S1 Missense_Mutation p.L170R 0.20 deleterious_low_confidence(0) probably_damaging(0.933) TCGA-EQ-A4SO-01 5 134369448 134369448 G C PITX1 Missense_Mutation p.P42A 0.71 tolerated(0.07) benign(0.005) TCGA-EQ-A4SO-01 5 13794139 13794139 C T DNAH5 Missense_Mutation p.R2639Q 0.31 possibly_damaging(0.553) TCGA-EQ-A4SO-01 5 149357287 149357287 A C SLC26A2 Silent p.P24P 0.39 TCGA-EQ-A4SO-01 5 149510205 149510205 G C PDGFRB Missense_Mutation p.L422V 0.37 deleterious(0.01) possibly_damaging(0.742) TCGA-EQ-A4SO-01 5 16682101 16682101 G A MYO10 Silent p.I1356I 0.33 TCGA-EQ-A4SO-01 5 167798508 167798508 G T WWC1 Missense_Mutation p.V67F 0.38 deleterious(0) probably_damaging(0.996) TCGA-EQ-A4SO-01 5 178555091 178555091 G T ADAMTS2 Nonsense_Mutation p.S829* 0.34 TCGA-EQ-A4SO-01 5 31305332 31305332 A C CDH6 Missense_Mutation p.N351H 0.36 deleterious(0) probably_damaging(0.999) TCGA-EQ-A4SO-01 5 41850261 41850261 G C OXCT1 Missense_Mutation p.I145M 0.36 tolerated(0.17) possibly_damaging(0.531) TCGA-EQ-A4SO-01 5 5191803 5191803 G T ADAMTS16 Missense_Mutation p.A405S 0.43 deleterious(0) probably_damaging(1) TCGA-EQ-A4SO-01 5 64890371 64890371 G A TRIM23 Missense_Mutation p.L508F 0.37 tolerated(0.23) probably_damaging(0.987) TCGA-EQ-A4SO-01 5 75621291 75621291 C A SV2C Silent p.I701I 0.48 TCGA-EQ-A4SO-01 5 77784944 77784944 G C LHFPL2 Missense_Mutation p.P155A 0.30 tolerated(0.08) probably_damaging(1) TCGA-EQ-A4SO-01 5 98128788 98128788 G C RGMB Splice_Site p.X257_splice 0.33 TCGA-EQ-A4SO-01 6 112486373 112486373 C G LAMA4 Missense_Mutation p.D553H 0.32 tolerated(0.08) possibly_damaging(0.776) TCGA-EQ-A4SO-01 6 12121963 12121978 GCTACAAAGGCAGCAG - HIVEP1 Frame_Shift_Del p.Q647Pfs*12 0.32 TCGA-EQ-A4SO-01 6 129725052 129725052 C T LAMA2 Missense_Mutation p.A1938V 0.33 deleterious(0) probably_damaging(0.999) TCGA-EQ-A4SO-01 6 22569774 22569774 T C HDGFL1 5'Flank 0.48 TCGA-EQ-A4SO-01 6 41621101 41621168 CTGACGCTGTGCAACATCGTCCTGGACTGCGCCACCTGTGGCTCCTGCAGCTCGGAGGACTCGTGCCT - MDFI Frame_Shift_Del p.T178Lfs*138 0.32 TCGA-EQ-A4SO-01 6 43400111 43400111 G C ABCC10 Silent p.R131R 0.42 TCGA-EQ-A4SO-01 6 43477513 43477513 C T LRRC73 Missense_Mutation p.S4N 0.44 deleterious(0.01) benign(0.01) TCGA-EQ-A4SO-01 6 46658067 46658067 T G TDRD6 Silent p.T734T 0.44 TCGA-EQ-A4SO-01 6 69685130 69685130 C A BAI3 Silent p.T544T 0.25 TCGA-EQ-A4SO-01 6 76063347 76063347 G T FILIP1 Silent p.T179T 0.54 TCGA-EQ-A4SO-01 6 88853985 88853985 T C CNR1 Missense_Mutation p.M337V 0.68 deleterious(0) probably_damaging(0.994) TCGA-EQ-A4SO-01 7 142364668 142364668 C T TRBV24-1 Silent p.I101I 0.75 TCGA-EQ-A4SO-01 7 151873650 151873657 CGGCCAGG - KMT2C Frame_Shift_Del p.P2961Cfs*4 0.30 TCGA-EQ-A4SO-01 7 34118785 34118785 G C BMPER Silent p.V465V 0.42 TCGA-EQ-A4SO-01 7 47894499 47894499 G T PKD1L1 Missense_Mutation p.P1614T 0.27 deleterious(0) probably_damaging(1) TCGA-EQ-A4SO-01 8 145655822 145655822 T C TONSL Missense_Mutation p.K1303R 0.28 deleterious(0.03) benign(0.035) TCGA-EQ-A4SO-01 8 146278248 146278248 G - C8orf33 Frame_Shift_Del p.A95Pfs*7 0.16 TCGA-EQ-A4SO-01 8 24170996 24170996 C T ADAM28 Missense_Mutation p.P160L 0.42 tolerated(0.07) possibly_damaging(0.489) TCGA-EQ-A4SO-01 8 26722311 26722311 G A ADRA1A Missense_Mutation p.S59L 0.36 deleterious(0) possibly_damaging(0.714) TCGA-EQ-A4SO-01 8 30703031 30703031 G C TEX15 Missense_Mutation p.S1168C 0.25 deleterious(0) probably_damaging(0.971) TCGA-EQ-A4SO-01 8 87454884 87454884 C A WWP1 Missense_Mutation p.N625K 0.50 deleterious(0) probably_damaging(0.999) TCGA-EQ-A4SO-01 9 107553269 107553276 GATGATTT AACAGCCCCATTAAC ABCA1 Frame_Shift_Ins p.K1952Vfs*24 0.22 TCGA-EQ-A4SO-01 9 126132605 126132605 C T CRB2 Missense_Mutation p.H425Y 0.42 deleterious(0.03) benign(0.152) TCGA-EQ-A4SO-01 9 131455034 131455034 G C SET Missense_Mutation p.R136T 0.43 deleterious(0.01) benign(0.378) TCGA-EQ-A4SO-01 9 139357381 139357381 C G SEC16A Missense_Mutation p.E1617D 0.52 tolerated(0.13) benign(0.279) TCGA-EQ-A4SO-01 9 43627904 43627904 C A SPATA31A6 Silent p.V261V 0.27 TCGA-EQ-A4SO-01 9 5304475 5304475 C G RLN2 Missense_Mutation p.G36R 0.25 deleterious(0.05) probably_damaging(1) TCGA-EQ-A4SO-01 9 90500146 90500146 G C SPATA31E1 Silent p.P248P 0.08 TCGA-EQ-A4SO-01 9 90500153 90500153 C A SPATA31E1 Missense_Mutation p.P251T 0.09 tolerated(0.54) possibly_damaging(0.57) TCGA-EQ-A4SO-01 9 96860706 96860706 C G PTPDC1 Missense_Mutation p.Q618E 0.32 tolerated(0.17) benign(0.013) TCGA-EQ-A4SO-01 X 100492725 100492725 G T DRP2 Silent p.G133G 0.84 TCGA-EQ-A4SO-01 X 100871542 100871542 G A ARMCX6 Silent p.C23C 0.76 TCGA-EQ-A4SO-01 X 109696087 109696087 T A RGAG1 Missense_Mutation p.S748T 0.79 tolerated(0.58) benign(0) TCGA-EQ-A4SO-01 X 135741371 135741371 C G CD40LG Missense_Mutation p.L195V 0.77 deleterious(0) possibly_damaging(0.634) TCGA-EQ-A4SO-01 X 148627250 148627250 C T CXorf40A Missense_Mutation p.T25M 0.81 tolerated(0.21) probably_damaging(0.96) TCGA-EQ-A4SO-01 X 35984819 35984819 C G CXorf22 Missense_Mutation p.F516L 0.57 tolerated(0.11) probably_damaging(0.999) TCGA-EQ-A4SO-01 X 54275887 54275913 TCTTCCACTTGATAAAGTATAGCTGGC - WNK3 In_Frame_Del p.Q956_D965delinsH 0.75 TCGA-EQ-A4SO-01 X 74519690 74519690 A T UPRT Missense_Mutation p.D228V 0.79 deleterious(0) probably_damaging(0.984) TCGA-EQ-A4SO-01 Y 22930849 22930849 C G RPS4Y2 Missense_Mutation p.I173M 0.67 deleterious(0) benign(0.213) TCGA-F1-6177-01 10 100157191 100157191 G A PYROXD2 Missense_Mutation p.A179V 0.36 tolerated(0.18) benign(0.001) TCGA-F1-6177-01 10 102749454 102749454 T C C10orf2 Missense_Mutation p.C433R 0.46 deleterious(0) probably_damaging(0.991) TCGA-F1-6177-01 10 102896546 102896546 C T TLX1 Missense_Mutation p.P290L 0.48 deleterious(0) possibly_damaging(0.636) TCGA-F1-6177-01 10 103339389 103339389 G A POLL Nonsense_Mutation p.R517* 0.38 TCGA-F1-6177-01 10 104174959 104174959 G - PSD Frame_Shift_Del p.P262Hfs*32 0.36 TCGA-F1-6177-01 10 104854154 104854154 C T NT5C2 Missense_Mutation p.R291Q 0.39 tolerated(0.41) benign(0.011) TCGA-F1-6177-01 10 111882009 111882009 G A ADD3 Missense_Mutation p.E368K 0.33 deleterious(0) benign(0.229) TCGA-F1-6177-01 10 112838876 112838876 G A ADRA2A Silent p.A374A 0.55 TCGA-F1-6177-01 10 115489357 115489357 T - CASP7 3'UTR 0.29 TCGA-F1-6177-01 10 115608932 115608932 C T DCLRE1A Silent p.L644L 0.42 TCGA-F1-6177-01 10 115804493 115804493 C T ADRB1 Missense_Mutation p.A201V 0.45 tolerated(0.71) benign(0.346) TCGA-F1-6177-01 10 118327244 118327244 C T PNLIP Intron 0.44 TCGA-F1-6177-01 10 118661341 118661342 - G KIAA1598 Frame_Shift_Ins p.T537Nfs*3 0.35 TCGA-F1-6177-01 10 119307775 119307775 A C EMX2 3'UTR 0.50 TCGA-F1-6177-01 10 12142200 12142200 C T DHTKD1 Silent p.D565D 0.35 TCGA-F1-6177-01 10 122348837 122348837 C T PPAPDC1A Silent p.I213I 0.41 TCGA-F1-6177-01 10 124390712 124390712 G A DMBT1 Silent p.T1958T 0.45 TCGA-F1-6177-01 10 124754119 124754119 C T IKZF5 Missense_Mutation p.R146H 0.46 deleterious(0.04) possibly_damaging(0.82) TCGA-F1-6177-01 10 126714834 126714834 C T CTBP2 Missense_Mutation p.A499T 0.59 tolerated_low_confidence(0.3) benign(0.001) TCGA-F1-6177-01 10 127452093 127452093 G A EDRF1 3'UTR 0.39 TCGA-F1-6177-01 10 128193320 128193320 G - C10orf90 Frame_Shift_Del p.P150Qfs*58 0.34 TCGA-F1-6177-01 10 129245705 129245705 C - DOCK1 Frame_Shift_Del p.P1801Lfs*14 0.28 TCGA-F1-6177-01 10 129902696 129902696 C A MKI67 Nonsense_Mutation p.E2470* 0.38 TCGA-F1-6177-01 10 13154615 13154615 T G OPTN Missense_Mutation p.F178V 0.46 deleterious(0.01) possibly_damaging(0.798) TCGA-F1-6177-01 10 134671162 134671162 C T TTC40 Missense_Mutation p.A1836T 0.34 tolerated(0.57) benign(0) TCGA-F1-6177-01 10 135101642 135101642 G A TUBGCP2 Silent p.D599D 0.37 TCGA-F1-6177-01 10 15262984 15262985 - G FAM171A1 Frame_Shift_Ins p.Q277Pfs*87 0.30 TCGA-F1-6177-01 10 18276431 18276431 G A SLC39A12 Missense_Mutation p.V374I 0.10 deleterious(0.04) probably_damaging(0.999) TCGA-F1-6177-01 10 26463094 26463094 A G MYO3A Missense_Mutation p.M1301V 0.41 tolerated_low_confidence(0.13) benign(0) TCGA-F1-6177-01 10 26998620 26998620 T C PDSS1 Silent p.D130D 0.38 TCGA-F1-6177-01 10 27538338 27538338 G A RP11-85G18.6 Intron 0.05 TCGA-F1-6177-01 10 27702951 27702951 G - PTCHD3 Frame_Shift_Del p.R77Gfs*43 0.40 TCGA-F1-6177-01 10 28378660 28378660 C T MPP7 Missense_Mutation p.E355K 0.49 tolerated(0.05) probably_damaging(0.997) TCGA-F1-6177-01 10 29782225 29782225 G A SVIL Missense_Mutation p.R1313C 0.46 deleterious(0.01) probably_damaging(0.978) TCGA-F1-6177-01 10 32863477 32863477 T - CCDC7 3'UTR 0.35 TCGA-F1-6177-01 10 37430911 37430911 G A ANKRD30A Silent p.T306T 0.44 TCGA-F1-6177-01 10 48371037 48371037 C T ZNF488 Nonsense_Mutation p.R169* 0.50 TCGA-F1-6177-01 10 49687682 49687682 C T ARHGAP22 Missense_Mutation p.G150R 0.47 deleterious(0.03) benign(0.2) TCGA-F1-6177-01 10 50532282 50532282 C - C10orf71 Frame_Shift_Del p.T566Lfs*24 0.32 TCGA-F1-6177-01 10 50819159 50819159 G T SLC18A3 Missense_Mutation p.G125W 0.44 deleterious(0) probably_damaging(1) TCGA-F1-6177-01 10 51582227 51582227 T C NCOA4 Silent p.I191I 0.08 TCGA-F1-6177-01 10 52570854 52570854 T C A1CF Missense_Mutation p.Q477R 0.36 deleterious(0.04) probably_damaging(0.995) TCGA-F1-6177-01 10 61831671 61831671 G A ANK3 Silent p.L2990L 0.46 TCGA-F1-6177-01 10 62652608 62652608 C T RHOBTB1 Missense_Mutation p.D148N 0.39 tolerated(0.15) probably_damaging(1) TCGA-F1-6177-01 10 63852248 63852248 C G ARID5B Missense_Mutation p.A1009G 0.30 deleterious(0.01) probably_damaging(0.944) TCGA-F1-6177-01 10 64159513 64159513 A - ZNF365 Intron 0.88 TCGA-F1-6177-01 10 69714858 69714858 A T HERC4 Missense_Mutation p.N693K 0.38 deleterious(0.02) possibly_damaging(0.558) TCGA-F1-6177-01 10 70706231 70706239 TCAGGCCGG - DDX50 In_Frame_Del p.R692_G694del 0.20 TCGA-F1-6177-01 10 7269848 7269848 G A SFMBT2 Missense_Mutation p.A391V 0.37 deleterious(0.02) benign(0.005) TCGA-F1-6177-01 10 75239200 75239200 A G PPP3CB Missense_Mutation p.V54A 0.43 tolerated(0.15) benign(0.005) TCGA-F1-6177-01 10 75525560 75525560 C - SEC24C Frame_Shift_Del p.Q459Sfs*32 0.32 TCGA-F1-6177-01 10 76744931 76744931 C T KAT6B Missense_Mutation p.P823S 0.43 probably_damaging(0.994) TCGA-F1-6177-01 10 85973046 85973046 G - CDHR1 Frame_Shift_Del p.G662Afs*30 0.30 TCGA-F1-6177-01 10 85974009 85974009 C T CDHR1 Missense_Mutation p.R738W 0.49 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-F1-6177-01 10 85997322 85997322 G T LRIT1 Silent p.P81P 0.32 TCGA-F1-6177-01 10 87966268 87966268 G A GRID1 Missense_Mutation p.R125C 0.45 deleterious(0) probably_damaging(0.998) TCGA-F1-6177-01 10 88912390 88912390 A - FAM35A Frame_Shift_Del p.T429Hfs*3 0.16 TCGA-F1-6177-01 10 90682146 90682146 A - STAMBPL1 Frame_Shift_Del p.K405Rfs*21 0.42 TCGA-F1-6177-01 10 91343975 91343975 G A PANK1 3'UTR 0.73 TCGA-F1-6177-01 10 91478521 91478521 T - KIF20B Frame_Shift_Del p.F444Lfs*9 0.27 TCGA-F1-6177-01 10 94825964 94825964 C T CYP26C1 Silent p.C371C 0.44 TCGA-F1-6177-01 10 94834065 94834065 C T CYP26A1 Missense_Mutation p.R64W 0.45 deleterious(0.01) probably_damaging(0.956) TCGA-F1-6177-01 10 97397084 97397084 C T ALDH18A1 Missense_Mutation p.R138Q 0.30 deleterious(0.01) probably_damaging(0.941) TCGA-F1-6177-01 10 97423816 97423816 T C TCTN3 3'UTR 0.38 TCGA-F1-6177-01 10 98376420 98376421 TC - PIK3AP1 Frame_Shift_Del p.K664Afs*31 0.39 TCGA-F1-6177-01 10 99330045 99330045 C A UBTD1 Missense_Mutation p.P150Q 0.40 tolerated(0.71) benign(0.003) TCGA-F1-6177-01 11 101946797 101946797 T A C11orf70 Intron 0.27 TCGA-F1-6177-01 11 107224389 107224389 C T CWF19L2 Missense_Mutation p.R649H 0.33 tolerated(0.26) benign(0.001) TCGA-F1-6177-01 11 1092334 1092334 C T MUC2 Missense_Mutation p.R1385C 0.50 probably_damaging(0.999) TCGA-F1-6177-01 11 110036179 110036179 G A ZC3H12C Missense_Mutation p.R790Q 0.43 tolerated(0.26) possibly_damaging(0.533) TCGA-F1-6177-01 11 111594685 111594685 A G SIK2 Silent p.G871G 0.45 TCGA-F1-6177-01 11 111855970 111855970 T C DIXDC1 Silent p.N310N 0.30 TCGA-F1-6177-01 11 111904183 111904183 A G DLAT Missense_Mutation p.E239G 0.29 tolerated(0.1) probably_damaging(0.981) TCGA-F1-6177-01 11 113673924 113673924 C - USP28 Frame_Shift_Del p.V940Sfs*5 0.26 TCGA-F1-6177-01 11 117059506 117059506 C T SIDT2 Silent p.T414T 0.35 TCGA-F1-6177-01 11 118344530 118344530 C T KMT2A Missense_Mutation p.R886W 0.42 probably_damaging(0.988) TCGA-F1-6177-01 11 118527419 118527419 C T PHLDB1 Silent p.C1340C 0.39 TCGA-F1-6177-01 11 119031362 119031362 G A ABCG4 Missense_Mutation p.V571I 0.48 tolerated(0.3) benign(0.034) TCGA-F1-6177-01 11 119182354 119182355 - G MCAM Frame_Shift_Ins p.W432Lfs*22 0.10 TCGA-F1-6177-01 11 119207088 119207088 C T RNF26 Missense_Mutation p.P419L 0.32 deleterious(0) probably_damaging(1) TCGA-F1-6177-01 11 120008518 120008518 C T TRIM29 Silent p.E74E 0.11 TCGA-F1-6177-01 11 120998774 120998774 C T TECTA Silent p.C696C 0.33 TCGA-F1-6177-01 11 121393406 121393406 G A SORL1 Missense_Mutation p.A506T 0.42 deleterious(0) probably_damaging(0.964) TCGA-F1-6177-01 11 123909320 123909320 C A OR10G7 Missense_Mutation p.R130M 0.83 deleterious(0) possibly_damaging(0.886) TCGA-F1-6177-01 11 125893432 125893432 A G CDON Intron 0.38 TCGA-F1-6177-01 11 126137087 126137087 T C SRPR Missense_Mutation p.K170R 0.61 tolerated(0.12) benign(0.108) TCGA-F1-6177-01 11 126333072 126333072 G A KIRREL3 Missense_Mutation p.S241L 0.33 deleterious(0.05) benign(0.013) TCGA-F1-6177-01 11 1270971 1270971 C G MUC5B Silent p.T4287T 0.24 TCGA-F1-6177-01 11 1270982 1270982 C T MUC5B Missense_Mutation p.A4291V 0.18 benign(0.042) TCGA-F1-6177-01 11 1271083 1271083 C G MUC5B Missense_Mutation p.P4325A 0.25 benign(0) TCGA-F1-6177-01 11 129980502 129980502 C T APLP2 Missense_Mutation p.R117W 0.46 deleterious(0) probably_damaging(0.984) TCGA-F1-6177-01 11 134234257 134234257 C T GLB1L2 Silent p.L257L 0.43 TCGA-F1-6177-01 11 134257541 134257541 G A B3GAT1 Missense_Mutation p.R5W 0.44 deleterious_low_confidence(0) possibly_damaging(0.847) TCGA-F1-6177-01 11 17482133 17482133 A G ABCC8 Missense_Mutation p.F305L 0.42 tolerated(0.53) benign(0.013) TCGA-F1-6177-01 11 18303557 18303557 T G HPS5 Missense_Mutation p.E1090A 0.06 tolerated(0.23) benign(0.011) TCGA-F1-6177-01 11 18531130 18531130 G A TSG101 Missense_Mutation p.S147L 0.51 tolerated(0.13) benign(0.001) TCGA-F1-6177-01 11 18531132 18531132 A T TSG101 Silent p.I146I 0.51 TCGA-F1-6177-01 11 18731162 18731162 G A IGSF22 Missense_Mutation p.R924W 0.37 deleterious(0.03) possibly_damaging(0.606) TCGA-F1-6177-01 11 18736102 18736102 C T IGSF22 Missense_Mutation p.C534Y 0.41 tolerated(0.07) benign(0.01) TCGA-F1-6177-01 11 18763909 18763909 C T PTPN5 Missense_Mutation p.D209N 0.28 tolerated(0.07) probably_damaging(0.973) TCGA-F1-6177-01 11 20177913 20177913 C T DBX1 Silent p.A332A 0.54 TCGA-F1-6177-01 11 26558959 26558959 G A ANO3 Missense_Mutation p.R328H 0.44 deleterious(0.05) benign(0.032) TCGA-F1-6177-01 11 30921956 30921956 G T DCDC1 Missense_Mutation p.L1531I 0.37 tolerated(0.26) possibly_damaging(0.567) TCGA-F1-6177-01 11 30946902 30946902 T C DCDC1 Missense_Mutation p.K984R 0.39 tolerated(0.06) benign(0.021) TCGA-F1-6177-01 11 3249838 3249838 G A MRGPRE Silent p.D63D 0.43 TCGA-F1-6177-01 11 32623960 32623960 A G EIF3M 3'UTR 0.51 TCGA-F1-6177-01 11 32637520 32637520 T - CCDC73 Frame_Shift_Del p.E448Kfs*5 0.31 TCGA-F1-6177-01 11 33628317 33628318 - C KIAA1549L Frame_Shift_Ins p.T1376Hfs*62 0.38 TCGA-F1-6177-01 11 373457 373457 C T B4GALNT4 Silent p.S215S 0.28 TCGA-F1-6177-01 11 403637 403637 G A PKP3 Missense_Mutation p.R648H 0.49 deleterious(0.03) probably_damaging(0.948) TCGA-F1-6177-01 11 4510486 4510486 C A OR52K1 Missense_Mutation p.A119D 0.33 deleterious(0) probably_damaging(0.973) TCGA-F1-6177-01 11 45277422 45277422 C T SYT13 Silent p.T68T 0.28 TCGA-F1-6177-01 11 46625304 46625304 C A HARBI1 Nonsense_Mutation p.G276* 0.31 TCGA-F1-6177-01 11 46799029 46799029 T - CKAP5 Frame_Shift_Del p.N941Ifs*2 0.32 TCGA-F1-6177-01 11 48171665 48171665 T C PTPRJ Missense_Mutation p.V1023A 0.05 deleterious(0.01) possibly_damaging(0.644) TCGA-F1-6177-01 11 494953 494953 G A RNH1 Silent p.L410L 0.50 TCGA-F1-6177-01 11 5153517 5153517 G A OR52A5 Missense_Mutation p.A119V 0.39 deleterious(0) benign(0.323) TCGA-F1-6177-01 11 5345106 5345106 G A OR51B2 Missense_Mutation p.A141V 0.44 deleterious(0.01) benign(0.028) TCGA-F1-6177-01 11 55065032 55065032 T - TRIM51HP RNA 0.32 TCGA-F1-6177-01 11 55653152 55653152 G T TRIM51 Missense_Mutation p.R83L 0.43 tolerated(0.61) benign(0.024) TCGA-F1-6177-01 11 55653610 55653610 A - TRIM51 Frame_Shift_Del p.M144Cfs*15 0.27 TCGA-F1-6177-01 11 56019846 56019847 - T OR5T3 Frame_Shift_Ins p.L59Ffs*23 0.23 TCGA-F1-6177-01 11 5686300 5686300 T G TRIM5 Silent p.G407G 0.42 TCGA-F1-6177-01 11 57995911 57995911 G A OR10Q1 Missense_Mutation p.T146M 0.47 deleterious(0.03) benign(0.202) TCGA-F1-6177-01 11 59856234 59856234 A - MS4A2 5'UTR p.M1? 0.15 TCGA-F1-6177-01 11 60610001 60610001 C A CCDC86 Missense_Mutation p.A135D 0.38 tolerated(1) benign(0.001) TCGA-F1-6177-01 11 60785823 60785823 C T CD6 Missense_Mutation p.P634S 0.31 tolerated(0.17) benign(0.021) TCGA-F1-6177-01 11 61067512 61067512 G A DDB1 3'UTR 0.43 TCGA-F1-6177-01 11 61981284 61981284 C T SCGB2A1 3'UTR 0.51 TCGA-F1-6177-01 11 621813 621813 T A CDHR5 Missense_Mutation p.E135V 0.36 deleterious(0) probably_damaging(0.978) TCGA-F1-6177-01 11 6220577 6220577 C T OR52W1 Silent p.L42L 0.55 TCGA-F1-6177-01 11 62388038 62388038 G - B3GAT3 Frame_Shift_Del p.P63Lfs*38 0.23 TCGA-F1-6177-01 11 62455516 62455516 G A LRRN4CL Silent p.A155A 0.36 TCGA-F1-6177-01 11 62458808 62458808 T C BSCL2 Missense_Mutation p.S317G 0.40 tolerated(0.09) benign(0.205) TCGA-F1-6177-01 11 6292284 6292284 G A CCKBR Silent p.A285A 0.42 TCGA-F1-6177-01 11 64359056 64359056 G A SLC22A12 Missense_Mutation p.V10M 0.38 deleterious(0.01) probably_damaging(0.961) TCGA-F1-6177-01 11 64397948 64397948 A G NRXN2 Missense_Mutation p.V1228A 0.39 deleterious(0.02) probably_damaging(0.918) TCGA-F1-6177-01 11 64410059 64410059 C T NRXN2 Intron 0.35 TCGA-F1-6177-01 11 64509498 64509498 C T RASGRP2 Missense_Mutation p.A54T 0.55 tolerated(0.47) benign(0.105) TCGA-F1-6177-01 11 6470133 6470133 C T TRIM3 3'UTR 0.59 TCGA-F1-6177-01 11 64972271 64972271 G A CAPN1 Missense_Mutation p.R428H 0.41 deleterious(0.02) possibly_damaging(0.891) TCGA-F1-6177-01 11 65422046 65422046 G - RELA Frame_Shift_Del p.H487Tfs*7 0.27 TCGA-F1-6177-01 11 65546371 65546371 C T AP5B1 Silent p.P531P 0.38 TCGA-F1-6177-01 11 65836235 65836235 T - SF3B2 3'UTR 0.36 TCGA-F1-6177-01 11 6622581 6622581 G A RRP8 Nonsense_Mutation p.R239* 0.48 TCGA-F1-6177-01 11 6636199 6636199 C - TPP1 Frame_Shift_Del p.I484Sfs*4 0.34 TCGA-F1-6177-01 11 6637718 6637718 C A TPP1 Missense_Mutation p.Q301H 0.50 deleterious(0) probably_damaging(0.96) TCGA-F1-6177-01 11 66391987 66391987 C T RBM14 Missense_Mutation p.R214C 0.10 deleterious(0) probably_damaging(0.924) TCGA-F1-6177-01 11 6654124 6654125 - G DCHS1 Frame_Shift_Ins p.A874Sfs*13 0.33 TCGA-F1-6177-01 11 67192057 67192057 G A CARNS1 Silent p.L946L 0.28 TCGA-F1-6177-01 11 67260427 67260427 C T PITPNM1 Missense_Mutation p.R1150Q 0.49 deleterious(0) benign(0.086) TCGA-F1-6177-01 11 67925165 67925165 A C SUV420H1 Missense_Mutation p.L883R 0.38 deleterious(0) probably_damaging(0.999) TCGA-F1-6177-01 11 68748126 68748126 T C MRGPRD Silent p.T110T 0.08 TCGA-F1-6177-01 11 69063147 69063147 G A MYEOV Missense_Mutation p.R77Q 0.26 deleterious_low_confidence(0) possibly_damaging(0.776) TCGA-F1-6177-01 11 69456219 69456219 A G CCND1 Silent p.K46K 0.32 TCGA-F1-6177-01 11 71193957 71193957 C - NADSYN1 Frame_Shift_Del p.R406Efs*8 0.34 TCGA-F1-6177-01 11 71726294 71726294 C T NUMA1 Missense_Mutation p.R752Q 0.49 benign(0.001) TCGA-F1-6177-01 11 71948327 71948327 C T INPPL1 Silent p.T1013T 0.32 TCGA-F1-6177-01 11 723257 723257 G A EPS8L2 Missense_Mutation p.R453Q 0.47 tolerated(0.28) benign(0.001) TCGA-F1-6177-01 11 73364059 73364059 G A PLEKHB1 Silent p.P130P 0.40 TCGA-F1-6177-01 11 74915685 74915685 C T SLCO2B1 3'UTR 0.60 TCGA-F1-6177-01 11 75438572 75438572 G A MOGAT2 Silent p.L121L 0.08 TCGA-F1-6177-01 11 75902892 75902892 G A WNT11 Silent p.R202R 0.42 TCGA-F1-6177-01 11 76814001 76814001 G A OMP Missense_Mutation p.R39H 0.33 tolerated_low_confidence(0.1) possibly_damaging(0.751) TCGA-F1-6177-01 11 771068 771068 C T PDDC1 Missense_Mutation p.R194H 0.35 deleterious(0) probably_damaging(0.992) TCGA-F1-6177-01 11 78412977 78412977 G A TENM4 Missense_Mutation p.R1561W 0.38 deleterious(0) possibly_damaging(0.886) TCGA-F1-6177-01 11 7982663 7982663 G C NLRP10 Missense_Mutation p.P166A 0.44 tolerated(0.4) possibly_damaging(0.637) TCGA-F1-6177-01 11 82693314 82693314 G A RAB30 Nonsense_Mutation p.R169* 0.36 TCGA-F1-6177-01 11 83544674 83544674 C A DLG2 Nonsense_Mutation p.G569* 0.37 TCGA-F1-6177-01 11 85436343 85436343 G A SYTL2 Missense_Mutation p.S386L 0.51 deleterious(0) possibly_damaging(0.889) TCGA-F1-6177-01 11 85979585 85979585 C T EED Silent p.G316G 0.34 TCGA-F1-6177-01 11 86055838 86055838 T - C11orf73 Intron 0.30 TCGA-F1-6177-01 11 92532189 92532189 G A FAT3 Missense_Mutation p.V2004I 0.36 possibly_damaging(0.52) TCGA-F1-6177-01 11 92599971 92599971 C T FAT3 Missense_Mutation p.S3908L 0.62 probably_damaging(0.976) TCGA-F1-6177-01 11 92600059 92600059 C T FAT3 Silent p.Y3937Y 0.31 TCGA-F1-6177-01 11 92714707 92714707 G A MTNR1B Nonsense_Mutation p.W106* 0.40 TCGA-F1-6177-01 11 9308018 9308018 A - TMEM41B Frame_Shift_Del p.F230Lfs*6 0.34 TCGA-F1-6177-01 11 95580917 95580917 C A MTMR2 Missense_Mutation p.L380F 0.39 tolerated(0.2) benign(0.018) TCGA-F1-6177-01 12 104048390 104048390 G T STAB2 Missense_Mutation p.G489W 0.40 deleterious(0) probably_damaging(0.999) TCGA-F1-6177-01 12 104698248 104698248 G A EID3 Missense_Mutation p.R179H 0.45 tolerated(0.06) possibly_damaging(0.627) TCGA-F1-6177-01 12 10854623 10854623 C T YBX3 Missense_Mutation p.R330Q 0.08 deleterious(0.05) benign(0.022) TCGA-F1-6177-01 12 109201572 109201572 C T SSH1 Missense_Mutation p.E190K 0.88 deleterious(0.04) benign(0.103) TCGA-F1-6177-01 12 109293174 109293174 C T DAO Nonsense_Mutation p.R279* 0.82 TCGA-F1-6177-01 12 10978282 10978282 A - TAS2R10 Frame_Shift_Del p.L196* 0.22 TCGA-F1-6177-01 12 110221457 110221458 - G TRPV4 Frame_Shift_Ins p.R862Pfs*6 0.20 TCGA-F1-6177-01 12 112485489 112485490 - A NAA25 Frame_Shift_Ins p.S663Qfs*11 0.36 TCGA-F1-6177-01 12 112673511 112673511 G T HECTD4 Missense_Mutation p.P1695Q 0.46 probably_damaging(0.98) TCGA-F1-6177-01 12 113321126 113321126 G A RPH3A Missense_Mutation p.R452Q 0.90 deleterious(0) probably_damaging(0.96) TCGA-F1-6177-01 12 113405771 113405771 C A OAS3 Missense_Mutation p.L966I 0.40 deleterious(0) probably_damaging(0.995) TCGA-F1-6177-01 12 113825651 113825652 - A PLBD2 Frame_Shift_Ins p.N515Kfs*114 0.32 TCGA-F1-6177-01 12 114395612 114395612 T - RBM19 Frame_Shift_Del p.K272Rfs*25 0.30 TCGA-F1-6177-01 12 118480690 118480690 G A WSB2 Missense_Mutation p.A172V 0.39 deleterious(0) possibly_damaging(0.774) TCGA-F1-6177-01 12 120150099 120150099 C T CIT Missense_Mutation p.G1580R 0.48 deleterious(0) probably_damaging(1) TCGA-F1-6177-01 12 121013442 121013442 G T RNF10 Missense_Mutation p.R717S 0.90 deleterious(0) probably_damaging(0.98) TCGA-F1-6177-01 12 122685346 122685346 C - LRRC43 Frame_Shift_Del p.I561Sfs*10 0.36 TCGA-F1-6177-01 12 122757436 122757436 C T CLIP1 Missense_Mutation p.D1435N 0.84 deleterious(0) probably_damaging(0.991) TCGA-F1-6177-01 12 123187880 123187880 G A HCAR2 5'UTR 0.38 TCGA-F1-6177-01 12 124403311 124403311 C G DNAH10 Missense_Mutation p.A3656G 0.89 probably_damaging(0.976) TCGA-F1-6177-01 12 125618593 125618593 G - AACS Frame_Shift_Del p.G533Afs*51 0.32 TCGA-F1-6177-01 12 133384552 133384552 G A GOLGA3 Missense_Mutation p.A368V 0.80 deleterious_low_confidence(0.03) probably_damaging(0.92) TCGA-F1-6177-01 12 14982272 14982272 T - ART4 3'UTR 0.38 TCGA-F1-6177-01 12 1748958 1748958 C T WNT5B Missense_Mutation p.T146M 0.53 tolerated(0.11) possibly_damaging(0.671) TCGA-F1-6177-01 12 18234035 18234035 A - RERGL 3'UTR 0.62 TCGA-F1-6177-01 12 1893046 1893046 G A ADIPOR2 Missense_Mutation p.G280E 0.47 deleterious(0) probably_damaging(0.993) TCGA-F1-6177-01 12 19427533 19427533 T C PLEKHA5 Missense_Mutation p.I310T 0.39 tolerated(0.21) benign(0.001) TCGA-F1-6177-01 12 20903827 20903827 A G SLCO1C1 Missense_Mutation p.K673E 0.34 deleterious(0.05) benign(0.001) TCGA-F1-6177-01 12 21644542 21644542 A G RECQL Missense_Mutation p.L42P 0.45 deleterious(0) probably_damaging(0.945) TCGA-F1-6177-01 12 21926431 21926431 G A KCNJ8 Silent p.S40S 0.39 TCGA-F1-6177-01 12 26749969 26749969 A G ITPR2 Silent p.D1367D 0.44 TCGA-F1-6177-01 12 27113510 27113510 T C FGFR1OP2 Silent p.L153L 0.51 TCGA-F1-6177-01 12 27824371 27824371 C G PPFIBP1 Missense_Mutation p.T402S 0.39 tolerated(0.46) benign(0.004) TCGA-F1-6177-01 12 3649793 3649793 C - PRMT8 Frame_Shift_Del p.Q35Sfs*31 0.39 TCGA-F1-6177-01 12 39713784 39713784 T - KIF21A Frame_Shift_Del p.I1235Ffs*7 0.40 TCGA-F1-6177-01 12 40020151 40020151 G - C12orf40 Frame_Shift_Del p.S7Pfs*6 0.26 TCGA-F1-6177-01 12 40728880 40728880 C T LRRK2 Missense_Mutation p.R1957C 0.07 deleterious(0.03) probably_damaging(0.94) TCGA-F1-6177-01 12 416953 416953 T - KDM5A Frame_Shift_Del p.G1200Dfs*9 0.41 TCGA-F1-6177-01 12 44193205 44193205 T A TWF1 Missense_Mutation p.N160I 0.57 deleterious(0.02) benign(0.121) TCGA-F1-6177-01 12 4479543 4479543 G A FGF23 Missense_Mutation p.P241L 0.46 tolerated_low_confidence(0.33) benign(0) TCGA-F1-6177-01 12 46215264 46215264 C T ARID2 Silent p.F233F 0.80 TCGA-F1-6177-01 12 4662161 4662161 A G RAD51AP1 Missense_Mutation p.E207G 0.38 deleterious(0) probably_damaging(0.923) TCGA-F1-6177-01 12 48272749 48272749 A G VDR Splice_Site p.X99_splice 0.44 TCGA-F1-6177-01 12 48380862 48380862 G A COL2A1 Missense_Mutation p.T455M 0.39 probably_damaging(0.938) TCGA-F1-6177-01 12 48391482 48391483 - G COL2A1 Frame_Shift_Ins p.G147Wfs*42 0.45 TCGA-F1-6177-01 12 49374348 49374348 G - WNT1 Frame_Shift_Del p.G169Afs*30 0.64 TCGA-F1-6177-01 12 49445674 49445674 G A KMT2D Missense_Mutation p.R598C 0.88 unknown(0) TCGA-F1-6177-01 12 52380676 52380676 A G ACVR1B Missense_Mutation p.Y445C 0.84 deleterious(0) probably_damaging(1) TCGA-F1-6177-01 12 52452493 52452493 C T NR4A1 Missense_Mutation p.P534L 0.25 deleterious(0.02) benign(0.366) TCGA-F1-6177-01 12 53819659 53819659 C T AMHR2 Missense_Mutation p.R270C 0.86 deleterious(0.02) benign(0.006) TCGA-F1-6177-01 12 53876800 53876800 C T MAP3K12 Missense_Mutation p.R596H 0.73 tolerated_low_confidence(0.13) possibly_damaging(0.843) TCGA-F1-6177-01 12 55863642 55863642 C T OR6C70 Missense_Mutation p.G94D 0.88 tolerated_low_confidence(0.4) benign(0.005) TCGA-F1-6177-01 12 5603308 5603309 AC - NTF3 Intron 0.31 TCGA-F1-6177-01 12 56113331 56113331 C T BLOC1S1 Missense_Mutation p.R134C 0.30 tolerated(0.09) benign(0.062) TCGA-F1-6177-01 12 56604256 56604256 C T RNF41 Missense_Mutation p.A63T 0.72 tolerated(0.32) benign(0.159) TCGA-F1-6177-01 12 57113958 57113960 TGC - NACA In_Frame_Del p.A452del 0.46 TCGA-F1-6177-01 12 57637988 57637988 G A STAC3 Silent p.V293V 0.86 TCGA-F1-6177-01 12 57865760 57865760 G C GLI1 Silent p.G1079G 0.84 TCGA-F1-6177-01 12 58141155 58141156 - T TSPAN31 3'UTR 0.38 TCGA-F1-6177-01 12 58174093 58174093 C T METTL21B Silent p.N115N 0.82 TCGA-F1-6177-01 12 59281569 59281588 ACAAAGTCTTTAAACTGGAA - LRIG3 Splice_Site p.X358_splice 0.23 TCGA-F1-6177-01 12 63541343 63541343 A - AVPR1A Frame_Shift_Del p.F351Lfs*19 0.47 TCGA-F1-6177-01 12 65110469 65110469 T G GNS 3'UTR 0.21 TCGA-F1-6177-01 12 6777207 6777207 T C ZNF384 Silent p.A469A 0.49 TCGA-F1-6177-01 12 70760700 70760700 C T KCNMB4 Silent p.I62I 0.51 TCGA-F1-6177-01 12 7084957 7084958 - G EMG1 Frame_Shift_Ins p.V242Gfs*26 0.32 TCGA-F1-6177-01 12 7086569 7086569 A G LPCAT3 Missense_Mutation p.M436T 0.46 deleterious(0.05) possibly_damaging(0.464) TCGA-F1-6177-01 12 70960486 70960486 T C PTPRB Splice_Site p.X1212_splice 0.06 TCGA-F1-6177-01 12 7242710 7242710 G A C1R Silent p.N121N 0.41 TCGA-F1-6177-01 12 76442093 76442093 A - NAP1L1 3'UTR 0.57 TCGA-F1-6177-01 12 8200544 8200544 C A FOXJ2 Missense_Mutation p.P295Q 0.10 tolerated(0.26) benign(0.004) TCGA-F1-6177-01 12 88480176 88480176 C T CEP290 Missense_Mutation p.A1432T 1.00 probably_damaging(0.999) TCGA-F1-6177-01 12 9004599 9004599 T C A2ML1 Silent p.D818D 0.44 TCGA-F1-6177-01 12 93170683 93170683 G A EEA1 Silent p.A1350A 0.82 TCGA-F1-6177-01 12 94653399 94653401 ACG - PLXNC1 In_Frame_Del p.D1048del 0.42 TCGA-F1-6177-01 13 103459927 103459927 A T BIVM-ERCC5 Missense_Mutation p.N76Y 0.43 deleterious_low_confidence(0) probably_damaging(0.955) TCGA-F1-6177-01 13 103514378 103514378 A C BIVM-ERCC5 Splice_Site p.X719_splice 0.44 TCGA-F1-6177-01 13 108518130 108518130 T G FAM155A Missense_Mutation p.D272A 0.45 deleterious(0) probably_damaging(0.997) TCGA-F1-6177-01 13 109792754 109792754 C T MYO16 Silent p.P1376P 0.56 TCGA-F1-6177-01 13 110434725 110434725 C T IRS2 Missense_Mutation p.G1226R 0.42 deleterious_low_confidence(0.01) possibly_damaging(0.725) TCGA-F1-6177-01 13 113505388 113505388 T C ATP11A Missense_Mutation p.L616P 0.44 deleterious(0) probably_damaging(0.949) TCGA-F1-6177-01 13 113801712 113801712 A - F10 Frame_Shift_Del p.N257Tfs*10 0.27 TCGA-F1-6177-01 13 114286057 114286057 C T TFDP1 Silent p.A102A 0.37 TCGA-F1-6177-01 13 23910913 23910913 C T SACS Missense_Mutation p.A2368T 0.45 benign(0.02) TCGA-F1-6177-01 13 23911667 23911667 G A SACS Silent p.P2116P 0.42 TCGA-F1-6177-01 13 25374553 25374553 G A RNF17 Missense_Mutation p.A547T 0.32 tolerated(0.46) benign(0.011) TCGA-F1-6177-01 13 25672306 25672306 A - PABPC3 3'UTR 0.34 TCGA-F1-6177-01 13 27254312 27254312 C T WASF3 Intron 0.52 TCGA-F1-6177-01 13 37598274 37598274 G A SUPT20H Missense_Mutation p.P497S 0.38 tolerated(0.2) benign(0.222) TCGA-F1-6177-01 13 45150004 45150005 - G TSC22D1 Frame_Shift_Ins p.A70Cfs*46 0.29 TCGA-F1-6177-01 13 46933764 46933764 G A KIAA0226L Silent p.V374V 0.33 TCGA-F1-6177-01 13 58207580 58207580 C T PCDH17 Silent p.T300T 0.47 TCGA-F1-6177-01 13 58208476 58208476 G A PCDH17 Missense_Mutation p.R599H 0.46 deleterious(0) probably_damaging(0.998) TCGA-F1-6177-01 13 60240695 60240695 T - DIAPH3 3'UTR 0.32 TCGA-F1-6177-01 13 70293600 70293600 C - KLHL1 Frame_Shift_Del p.G639Vfs*14 0.30 TCGA-F1-6177-01 13 79175961 79175961 G A POU4F1 Silent p.G283G 0.29 TCGA-F1-6177-01 13 95121040 95121040 A - DCT Frame_Shift_Del p.F185Lfs*14 0.40 TCGA-F1-6177-01 13 95131418 95131418 G A DCT Missense_Mutation p.T31M 0.42 deleterious(0) probably_damaging(0.999) TCGA-F1-6177-01 13 96205001 96205001 C T CLDN10 5'UTR 0.36 TCGA-F1-6177-01 13 99505676 99505676 T G DOCK9 Missense_Mutation p.K1311T 0.46 deleterious(0) possibly_damaging(0.575) TCGA-F1-6177-01 14 100795725 100795725 G - SLC25A47 Frame_Shift_Del p.G225Afs*16 0.28 TCGA-F1-6177-01 14 102378839 102378839 G A PPP2R5C Intron 0.41 TCGA-F1-6177-01 14 102476416 102476416 T - DYNC1H1 Frame_Shift_Del p.F2073Lfs*21 0.36 TCGA-F1-6177-01 14 102550309 102550309 C A HSP90AA1 Missense_Mutation p.G509W 0.33 deleterious_low_confidence(0) unknown(0) TCGA-F1-6177-01 14 102808544 102808544 C T ZNF839 3'UTR 0.28 TCGA-F1-6177-01 14 105410862 105410862 T C AHNAK2 Silent p.K3642K 0.21 TCGA-F1-6177-01 14 105418827 105418827 G A AHNAK2 Silent p.A987A 0.05 TCGA-F1-6177-01 14 105995483 105995483 G A TMEM121 Silent p.A104A 0.22 TCGA-F1-6177-01 14 20216140 20216140 T C OR4Q3 Missense_Mutation p.V185A 0.09 deleterious(0) possibly_damaging(0.469) TCGA-F1-6177-01 14 20528659 20528659 T - OR4L1 Frame_Shift_Del p.L154Yfs*4 0.09 TCGA-F1-6177-01 14 21549846 21549846 G A ARHGEF40 Missense_Mutation p.R940H 0.54 tolerated(0.55) benign(0.027) TCGA-F1-6177-01 14 23495175 23495175 A - PSMB5 3'UTR 0.26 TCGA-F1-6177-01 14 23517514 23517514 G - CDH24 Frame_Shift_Del p.P712Rfs*129 0.34 TCGA-F1-6177-01 14 23530627 23530627 G A ACIN1 Nonsense_Mutation p.R1160* 0.50 TCGA-F1-6177-01 14 23530687 23530687 G A ACIN1 Missense_Mutation p.R1140W 0.51 probably_damaging(0.976) TCGA-F1-6177-01 14 23817841 23817841 G A SLC22A17 Missense_Mutation p.A189V 0.40 tolerated(0.29) benign(0.018) TCGA-F1-6177-01 14 23826481 23826481 C A EFS Missense_Mutation p.G547V 0.40 deleterious(0.05) possibly_damaging(0.72) TCGA-F1-6177-01 14 23847614 23847614 C T CMTM5 Silent p.A61A 0.48 TCGA-F1-6177-01 14 23889280 23889280 C T MYH7 Missense_Mutation p.R1167H 0.28 deleterious(0) probably_damaging(1) TCGA-F1-6177-01 14 24026212 24026213 CA - THTPA Frame_Shift_Del p.T83Sfs*11 0.29 TCGA-F1-6177-01 14 24032709 24032709 C T AP1G2 Silent p.A430A 0.34 TCGA-F1-6177-01 14 24518539 24518539 C T LRRC16B 5'Flank 0.50 TCGA-F1-6177-01 14 24652846 24652846 A G IPO4 Silent p.D671D 0.44 TCGA-F1-6177-01 14 24839090 24839091 - G NFATC4 Frame_Shift_Ins p.A228Gfs*23 0.35 TCGA-F1-6177-01 14 36004942 36004942 G A INSM2 Missense_Mutation p.R495H 0.42 deleterious(0) probably_damaging(0.998) TCGA-F1-6177-01 14 38678848 38678848 G A SSTR1 Missense_Mutation p.R85H 0.33 tolerated(0.09) probably_damaging(0.991) TCGA-F1-6177-01 14 38679088 38679088 C T SSTR1 Missense_Mutation p.A165V 0.42 deleterious(0.02) probably_damaging(0.984) TCGA-F1-6177-01 14 39565189 39565189 A G SEC23A Missense_Mutation p.L45P 0.47 deleterious(0) probably_damaging(0.965) TCGA-F1-6177-01 14 51381427 51381427 T C PYGL Missense_Mutation p.I504V 0.49 deleterious(0.03) benign(0.195) TCGA-F1-6177-01 14 52734813 52734813 G T PTGDR Missense_Mutation p.R94L 0.30 tolerated(0.74) benign(0.037) TCGA-F1-6177-01 14 52781670 52781670 A G PTGER2 Missense_Mutation p.Y135C 0.36 tolerated(1) benign(0.013) TCGA-F1-6177-01 14 54418739 54418739 G A BMP4 Missense_Mutation p.R68C 0.39 deleterious(0) possibly_damaging(0.901) TCGA-F1-6177-01 14 55605002 55605003 - G LGALS3 Frame_Shift_Ins p.A88Gfs*32 0.34 TCGA-F1-6177-01 14 56233217 56233217 G A RP11-813I20.2 Intron 0.69 TCGA-F1-6177-01 14 57268355 57268355 T C OTX2 3'UTR 0.43 TCGA-F1-6177-01 14 58690342 58690342 C T ACTR10 Missense_Mutation p.R213C 0.50 deleterious(0) probably_damaging(0.99) TCGA-F1-6177-01 14 60070603 60070603 C T RTN1 Missense_Mutation p.A717T 0.32 deleterious(0) probably_damaging(0.982) TCGA-F1-6177-01 14 60213015 60213015 C T RTN1 Silent p.E142E 0.46 TCGA-F1-6177-01 14 62187241 62187241 G A HIF1A Silent p.V83V 0.47 TCGA-F1-6177-01 14 64450478 64450478 A - SYNE2 Frame_Shift_Del p.K677Nfs*30 0.30 TCGA-F1-6177-01 14 64520260 64520260 C T SYNE2 Missense_Mutation p.T3210I 0.18 benign(0.133) TCGA-F1-6177-01 14 65543066 65543066 A - MAX 3'UTR 0.37 TCGA-F1-6177-01 14 69866023 69866023 A C SLC39A9 5'UTR 0.50 TCGA-F1-6177-01 14 73544119 73544119 G A RBM25 Missense_Mutation p.A67T 0.33 benign(0.097) TCGA-F1-6177-01 14 74970717 74970717 C T LTBP2 Silent p.P1498P 0.35 TCGA-F1-6177-01 14 75151323 75151323 G A AREL1 Missense_Mutation p.A26V 0.41 tolerated_low_confidence(0.16) possibly_damaging(0.612) TCGA-F1-6177-01 14 75277083 75277083 C T YLPM1 Missense_Mutation p.R1730W 0.40 probably_damaging(0.984) TCGA-F1-6177-01 14 75602475 75602475 G A TMED10 Missense_Mutation p.R176C 0.40 deleterious(0.04) possibly_damaging(0.563) TCGA-F1-6177-01 14 77255439 77255439 A G ANGEL1 3'UTR 0.47 TCGA-F1-6177-01 14 77600151 77600151 C - ZDHHC22 Frame_Shift_Del p.V223Wfs*3 0.28 TCGA-F1-6177-01 14 88450866 88450866 A G GALC Missense_Mutation p.S152P 0.43 deleterious(0.01) possibly_damaging(0.837) TCGA-F1-6177-01 14 90871130 90871130 A - CALM1 3'UTR 0.45 TCGA-F1-6177-01 14 92047403 92047403 C T CATSPERB Missense_Mutation p.A1061T 0.56 deleterious(0.01) possibly_damaging(0.897) TCGA-F1-6177-01 14 95058423 95058423 C T SERPINA5 Silent p.D356D 0.41 TCGA-F1-6177-01 14 95080920 95080920 G A SERPINA3 Missense_Mutation p.G48R 0.36 tolerated(0.71) benign(0.001) TCGA-F1-6177-01 14 96731019 96731019 A C BDKRB1 Missense_Mutation p.S334R 0.05 tolerated(0.34) benign(0.004) TCGA-F1-6177-01 14 96875210 96875211 - A AK7 Frame_Shift_Ins p.R146Afs*25 0.29 TCGA-F1-6177-01 15 101440957 101440957 G T ALDH1A3 Missense_Mutation p.G354V 0.26 deleterious(0) probably_damaging(1) TCGA-F1-6177-01 15 101529526 101529526 C T LRRK1 Missense_Mutation p.P229S 0.36 tolerated(0.15) probably_damaging(0.96) TCGA-F1-6177-01 15 24923884 24923884 C T NPAP1 Missense_Mutation p.T957I 0.11 tolerated(0.25) possibly_damaging(0.499) TCGA-F1-6177-01 15 25488618 25488618 G T SNORD115-40 5'Flank 0.09 TCGA-F1-6177-01 15 25947181 25947181 G A ATP10A Missense_Mutation p.A881V 0.50 deleterious(0.02) probably_damaging(0.985) TCGA-F1-6177-01 15 28090178 28090178 C T OCA2 Missense_Mutation p.A787T 0.38 deleterious(0) probably_damaging(1) TCGA-F1-6177-01 15 28437288 28437288 G A HERC2 Missense_Mutation p.A2757V 0.40 benign(0.002) TCGA-F1-6177-01 15 28493767 28493767 G A HERC2 Missense_Mutation p.R1056C 0.41 possibly_damaging(0.854) TCGA-F1-6177-01 15 29397613 29397613 C T APBA2 Missense_Mutation p.A519V 0.39 deleterious(0.01) probably_damaging(0.997) TCGA-F1-6177-01 15 30001145 30001145 G A TJP1 Nonsense_Mutation p.R1490* 0.29 TCGA-F1-6177-01 15 30010706 30010706 A C TJP1 Missense_Mutation p.F1214V 0.46 tolerated_low_confidence(0.06) benign(0.01) TCGA-F1-6177-01 15 30659642 30659642 G A CHRFAM7A Silent p.D233D 0.24 TCGA-F1-6177-01 15 31233850 31233850 G A MTMR10 Silent p.N719N 0.38 TCGA-F1-6177-01 15 31294935 31294936 - T TRPM1 Frame_Shift_Ins p.T1340Nfs*45 0.34 TCGA-F1-6177-01 15 39875816 39875817 - G THBS1 Splice_Site p.X211_splice 0.29 TCGA-F1-6177-01 15 39885703 39885703 G A THBS1 Missense_Mutation p.R1034H 0.34 tolerated(0.06) possibly_damaging(0.884) TCGA-F1-6177-01 15 39910098 39910098 C T FSIP1 Missense_Mutation p.V513I 0.44 tolerated(0.12) benign(0.038) TCGA-F1-6177-01 15 40849315 40849316 - A C15orf57 Intron 0.48 TCGA-F1-6177-01 15 41377755 41377755 T - INO80 Frame_Shift_Del p.R229Dfs*45 0.29 TCGA-F1-6177-01 15 42193061 42193061 C T EHD4 Missense_Mutation p.A470T 0.37 deleterious(0.01) probably_damaging(0.998) TCGA-F1-6177-01 15 43067849 43067849 G A TTBK2 Silent p.C494C 0.42 TCGA-F1-6177-01 15 43252854 43252855 - T UBR1 Frame_Shift_Ins p.N1582Kfs*8 0.44 TCGA-F1-6177-01 15 43622547 43622547 G C LCMT2 Silent p.R47R 0.33 TCGA-F1-6177-01 15 43815948 43815948 G A MAP1A Silent p.P759P 0.31 TCGA-F1-6177-01 15 44127282 44127282 C T WDR76 Silent p.Y162Y 0.46 TCGA-F1-6177-01 15 45003781 45003782 CT - B2M Frame_Shift_Del p.L15Ffs*41 0.48 TCGA-F1-6177-01 15 45848190 45848190 T - RP11-96O20.2 5'Flank 0.22 TCGA-F1-6177-01 15 48634180 48634180 A - DUT Intron 0.43 TCGA-F1-6177-01 15 49431799 49431799 G A COPS2 Missense_Mutation p.R100W 0.39 deleterious(0) possibly_damaging(0.757) TCGA-F1-6177-01 15 51221320 51221321 - G AP4E1 Frame_Shift_Ins p.V221Gfs*11 0.26 TCGA-F1-6177-01 15 51350305 51350305 C T TNFAIP8L3 Missense_Mutation p.D218N 0.08 deleterious(0.01) probably_damaging(1) TCGA-F1-6177-01 15 51696776 51696776 T C GLDN Missense_Mutation p.F494S 0.06 deleterious(0.01) probably_damaging(0.997) TCGA-F1-6177-01 15 52680071 52680072 TT - MYO5A Frame_Shift_Del p.K569Rfs*5 0.23 TCGA-F1-6177-01 15 52903388 52903388 A - FAM214A Frame_Shift_Del p.S157Lfs*3 0.16 TCGA-F1-6177-01 15 53081088 53081088 G A ONECUT1 Missense_Mutation p.R332C 0.49 deleterious(0.01) probably_damaging(0.97) TCGA-F1-6177-01 15 55790598 55790598 G A DYX1C1 5'UTR 0.32 TCGA-F1-6177-01 15 58724239 58724239 C T LIPC Missense_Mutation p.T3I 0.25 tolerated_low_confidence(0.21) benign(0.001) TCGA-F1-6177-01 15 62256915 62256915 T - VPS13C Frame_Shift_Del p.N1066Ifs*25 0.36 TCGA-F1-6177-01 15 65954190 65954190 T C DENND4A Silent p.%3D 0.50 TCGA-F1-6177-01 15 66793741 66793741 A G RPL4 Silent p.G216G 0.38 TCGA-F1-6177-01 15 67664607 67664607 C T IQCH Silent p.H304H 0.30 TCGA-F1-6177-01 15 68468059 68468059 A - PIAS1 Frame_Shift_Del p.K420Rfs*17 0.34 TCGA-F1-6177-01 15 68612614 68612614 G A ITGA11 Missense_Mutation p.A842V 0.49 tolerated(0.65) benign(0.124) TCGA-F1-6177-01 15 69708364 69708364 A - KIF23 Frame_Shift_Del p.S18Pfs*27 0.21 TCGA-F1-6177-01 15 69709798 69709798 A G KIF23 Missense_Mutation p.Q53R 0.47 deleterious(0.04) possibly_damaging(0.775) TCGA-F1-6177-01 15 72190580 72190580 A - MYO9A Frame_Shift_Del p.Y1422Ifs*8 0.36 TCGA-F1-6177-01 15 72637764 72637764 C T HEXA Intron 0.47 TCGA-F1-6177-01 15 73585744 73585744 C A NEO1 Silent p.A1252A 0.35 TCGA-F1-6177-01 15 73615907 73615907 C T HCN4 Missense_Mutation p.A843T 0.33 tolerated_low_confidence(0.48) unknown(0) TCGA-F1-6177-01 15 74488486 74488486 G T STRA6 Missense_Mutation p.P129H 0.42 deleterious(0) probably_damaging(0.982) TCGA-F1-6177-01 15 74911653 74911653 G A CLK3 Missense_Mutation p.R187Q 0.41 deleterious(0.04) benign(0.022) TCGA-F1-6177-01 15 77473380 77473380 G A PEAK1 Nonsense_Mutation p.R297* 0.42 TCGA-F1-6177-01 15 78921959 78921959 G A CHRNB4 Missense_Mutation p.R230C 0.46 deleterious(0) probably_damaging(1) TCGA-F1-6177-01 15 79750586 79750586 A - KIAA1024 Frame_Shift_Del p.S702Afs*11 0.69 TCGA-F1-6177-01 15 80889665 80889665 G A ARNT2 3'UTR 0.44 TCGA-F1-6177-01 15 83350299 83350299 G A AP3B2 Missense_Mutation p.R132C 0.39 deleterious(0) probably_damaging(1) TCGA-F1-6177-01 15 86028977 86028977 C T AKAP13 Missense_Mutation p.P9L 0.34 tolerated(0.07) benign(0.006) TCGA-F1-6177-01 15 89382169 89382169 G A ACAN Missense_Mutation p.A116T 0.46 deleterious(0) unknown(0) TCGA-F1-6177-01 15 90771643 90771643 G A SEMA4B Missense_Mutation p.C761Y 0.44 tolerated(0.21) benign(0.076) TCGA-F1-6177-01 15 90796498 90796498 A T TTLL13 Missense_Mutation p.M106L 0.30 tolerated(0.74) benign(0) TCGA-F1-6177-01 15 91354578 91354578 C A BLM Missense_Mutation p.P1340T 0.37 deleterious(0.02) benign(0.089) TCGA-F1-6177-01 15 94899262 94899262 T - MCTP2 Intron 0.30 TCGA-F1-6177-01 16 15820795 15820800 CTTCTT - MYH11 In_Frame_Del p.K1262_K1263del 0.47 TCGA-F1-6177-01 16 1823424 1823424 C T EME2 Silent p.L66L 0.64 TCGA-F1-6177-01 16 1836845 1836845 G A NUBP2 Missense_Mutation p.G75S 0.33 deleterious(0) probably_damaging(0.996) TCGA-F1-6177-01 16 18844443 18844443 G A SMG1 Nonsense_Mutation p.R2871* 0.40 TCGA-F1-6177-01 16 19184063 19184063 G A SYT17 Intron 0.43 TCGA-F1-6177-01 16 20359844 20359844 G A UMOD Missense_Mutation p.A260V 0.19 tolerated(0.07) benign(0.055) TCGA-F1-6177-01 16 2051158 2051158 G A ZNF598 Missense_Mutation p.R350W 0.36 probably_damaging(0.995) TCGA-F1-6177-01 16 2052542 2052542 G A ZNF598 Silent p.D219D 0.39 TCGA-F1-6177-01 16 21147803 21147803 C T DNAH3 Missense_Mutation p.R243H 0.13 tolerated(0.07) benign(0.001) TCGA-F1-6177-01 16 21328281 21328281 C T CRYM-AS1 RNA 0.40 TCGA-F1-6177-01 16 22237143 22237143 C T EEF2K Silent p.S31S 0.32 TCGA-F1-6177-01 16 2287831 2287831 G A DNASE1L2 Missense_Mutation p.A219T 0.50 deleterious(0.04) benign(0.024) TCGA-F1-6177-01 16 24788506 24788506 G T TNRC6A Missense_Mutation p.R139L 0.43 deleterious(0) possibly_damaging(0.549) TCGA-F1-6177-01 16 2809397 2809397 G A SRRM2 Missense_Mutation p.R245Q 0.29 unknown(0) TCGA-F1-6177-01 16 28855078 28855078 C A TUFM Silent p.R391R 0.23 TCGA-F1-6177-01 16 28883542 28883542 C T SH2B1 Silent p.G515G 0.33 TCGA-F1-6177-01 16 28919999 28919999 C T RABEP2 Silent p.L392L 0.40 TCGA-F1-6177-01 16 29825146 29825146 G - PRRT2 Frame_Shift_Del p.G259Vfs*54 0.26 TCGA-F1-6177-01 16 3024408 3024408 G A PKMYT1 Silent p.S330S 0.29 TCGA-F1-6177-01 16 30518138 30518138 C - ITGAL Frame_Shift_Del p.P825Rfs*11 0.30 TCGA-F1-6177-01 16 3063742 3063742 C T CLDN9 Missense_Mutation p.L127F 0.33 tolerated(0.06) benign(0.009) TCGA-F1-6177-01 16 30740479 30740479 T C SRCAP Missense_Mutation p.Y1951H 0.52 probably_damaging(0.924) TCGA-F1-6177-01 16 30904559 30904559 C T BCL7C Missense_Mutation p.V49M 0.45 deleterious(0) benign(0.087) TCGA-F1-6177-01 16 31138547 31138547 G A KAT8 Missense_Mutation p.G185E 0.36 deleterious(0) probably_damaging(1) TCGA-F1-6177-01 16 33020732 33020732 C A IGHV3OR16-8 Missense_Mutation p.T47N 0.29 deleterious_low_confidence(0.03) benign(0.12) TCGA-F1-6177-01 16 347983 347983 C - AXIN1 Frame_Shift_Del p.G508Vfs*197 0.38 TCGA-F1-6177-01 16 396234 396234 G - AXIN1 Frame_Shift_Del p.G265Efs*149 0.26 TCGA-F1-6177-01 16 396464 396464 C T AXIN1 Missense_Mutation p.E188K 0.49 deleterious(0) probably_damaging(1) TCGA-F1-6177-01 16 426792 426792 G A TMEM8A Missense_Mutation p.T219M 0.34 deleterious(0) probably_damaging(0.986) TCGA-F1-6177-01 16 48385596 48385596 C T LONP2 Silent p.N814N 0.31 TCGA-F1-6177-01 16 4934126 4934126 G A PPL Silent p.G1510G 0.42 TCGA-F1-6177-01 16 49671411 49671411 G T ZNF423 Missense_Mutation p.P551Q 0.49 deleterious(0) probably_damaging(1) TCGA-F1-6177-01 16 49671517 49671517 C T ZNF423 Missense_Mutation p.A516T 0.29 tolerated(0.05) probably_damaging(0.936) TCGA-F1-6177-01 16 50109581 50109581 T C HEATR3 Missense_Mutation p.V241A 0.05 tolerated(0.7) benign(0.002) TCGA-F1-6177-01 16 50259111 50259111 C T PAPD5 Missense_Mutation p.S557L 0.29 tolerated(0.28) benign(0.004) TCGA-F1-6177-01 16 50746063 50746063 C T NOD2 Silent p.Y747Y 0.46 TCGA-F1-6177-01 16 5083324 5083324 C - NAGPA Frame_Shift_Del p.L165Cfs*35 0.65 TCGA-F1-6177-01 16 5125391 5125391 C - ALG1 Frame_Shift_Del p.P133Qfs*59 0.32 TCGA-F1-6177-01 16 56872937 56872937 T - NUP93 Frame_Shift_Del p.F699Lfs*19 0.31 TCGA-F1-6177-01 16 66413312 66413312 A G CDH5 Silent p.A24A 0.40 TCGA-F1-6177-01 16 67323574 67323574 G T KCTD19 Silent p.P893P 0.45 TCGA-F1-6177-01 16 67645338 67645339 - A CTCF Frame_Shift_Ins p.T204Nfs*26 0.38 TCGA-F1-6177-01 16 67691166 67691166 C - RLTPR Frame_Shift_Del p.V1383Sfs*16 0.26 TCGA-F1-6177-01 16 67709578 67709578 C T GFOD2 Missense_Mutation p.G213D 0.37 deleterious(0.04) probably_damaging(1) TCGA-F1-6177-01 16 67862729 67862729 G A CENPT Missense_Mutation p.A433V 0.34 tolerated(0.33) benign(0.083) TCGA-F1-6177-01 16 67919838 67919838 T - NRN1L Intron 0.26 TCGA-F1-6177-01 16 68862192 68862192 C T CDH1 Silent p.G760G 0.41 TCGA-F1-6177-01 16 69390675 69390675 C T TERF2 3'UTR 0.72 TCGA-F1-6177-01 16 70726786 70726786 G A VAC14 Silent p.S708S 0.58 TCGA-F1-6177-01 16 70815824 70815824 G A VAC14 Silent p.S298S 0.26 TCGA-F1-6177-01 16 71674425 71674425 C T MARVELD3 Missense_Mutation p.P243L 0.44 tolerated(0.06) probably_damaging(0.962) TCGA-F1-6177-01 16 71736615 71736615 G A PHLPP2 Nonsense_Mutation p.R102* 0.39 TCGA-F1-6177-01 16 72046132 72046132 C T DHODH Missense_Mutation p.R69W 0.34 deleterious(0.02) benign(0.236) TCGA-F1-6177-01 16 72130091 72130091 G A DHX38 Missense_Mutation p.R12Q 0.41 deleterious_low_confidence(0.01) benign(0.045) TCGA-F1-6177-01 16 72134477 72134477 G A DHX38 Missense_Mutation p.R420H 0.44 deleterious(0.01) benign(0.429) TCGA-F1-6177-01 16 72153907 72153907 G A PMFBP1 Silent p.A950A 0.36 TCGA-F1-6177-01 16 731217 731217 G A STUB1 Silent p.Q75Q 0.40 TCGA-F1-6177-01 16 74526881 74526881 A G GLG1 Missense_Mutation p.M403T 0.51 deleterious(0) benign(0.236) TCGA-F1-6177-01 16 74937943 74937943 G A WDR59 Missense_Mutation p.R590C 0.46 deleterious(0) possibly_damaging(0.586) TCGA-F1-6177-01 16 75148724 75148724 C T LDHD Splice_Site p.X157_splice 0.29 TCGA-F1-6177-01 16 75512783 75512783 C T CHST6 Missense_Mutation p.R315H 0.34 tolerated(0.19) benign(0.018) TCGA-F1-6177-01 16 75564134 75564134 C T CHST5 Missense_Mutation p.R50Q 0.39 tolerated(0.51) benign(0.007) TCGA-F1-6177-01 16 75634035 75634035 A - ADAT1 3'UTR 0.33 TCGA-F1-6177-01 16 79632668 79632668 C T MAF Intron 0.29 TCGA-F1-6177-01 16 80654764 80654764 G A CDYL2 Silent p.S301S 0.45 TCGA-F1-6177-01 16 81124283 81124283 G A GCSH Missense_Mutation p.R51C 0.37 tolerated(0.06) benign(0.044) TCGA-F1-6177-01 16 81145839 81145839 G A PKD1L2 RNA 0.38 TCGA-F1-6177-01 16 81694495 81694495 G A CMIP Missense_Mutation p.A230T 0.45 tolerated(0.07) probably_damaging(0.985) TCGA-F1-6177-01 16 84256361 84256361 G A KCNG4 Missense_Mutation p.A341V 0.47 deleterious(0.02) probably_damaging(0.999) TCGA-F1-6177-01 16 84806174 84806175 - A USP10 Frame_Shift_Ins p.L678Tfs*15 0.30 TCGA-F1-6177-01 16 84812581 84812581 C T USP10 Missense_Mutation p.R764C 0.30 deleterious(0.03) benign(0.26) TCGA-F1-6177-01 16 85024123 85024123 G A ZDHHC7 Silent p.D34D 0.40 TCGA-F1-6177-01 16 85143874 85143874 G A FAM92B Silent p.F71F 0.43 TCGA-F1-6177-01 16 85839437 85839437 A G COX4I1 Missense_Mutation p.T114A 0.36 tolerated(0.09) benign(0.03) TCGA-F1-6177-01 16 86575426 86575426 G A MTHFSD Silent p.V186V 0.10 TCGA-F1-6177-01 16 88601440 88601440 G - ZFPM1 3'UTR 0.27 TCGA-F1-6177-01 16 89614500 89614500 G A SPG7 Missense_Mutation p.A548T 0.39 deleterious(0) probably_damaging(1) TCGA-F1-6177-01 16 9010901 9010901 T - USP7 Frame_Shift_Del p.K278Sfs*2 0.35 TCGA-F1-6177-01 17 12011155 12011155 T - MAP2K4 Frame_Shift_Del p.Y189Tfs*8 0.28 TCGA-F1-6177-01 17 12642606 12642606 C - MYOCD Frame_Shift_Del p.S229Afs*4 0.31 TCGA-F1-6177-01 17 1419815 1419815 G A INPP5K 5'UTR 0.55 TCGA-F1-6177-01 17 15162426 15162426 A G PMP22 Missense_Mutation p.S55P 0.42 tolerated(0.42) benign(0.003) TCGA-F1-6177-01 17 1637358 1637358 C T WDR81 Missense_Mutation p.P1676L 0.39 deleterious(0) probably_damaging(0.989) TCGA-F1-6177-01 17 1638935 1638935 C - WDR81 Frame_Shift_Del p.H1752Tfs*33 0.25 TCGA-F1-6177-01 17 1650347 1650347 G T SERPINF2 Missense_Mutation p.Q134H 0.36 tolerated(0.17) benign(0.026) TCGA-F1-6177-01 17 17697948 17697948 C T RAI1 Silent p.D562D 0.43 TCGA-F1-6177-01 17 18022933 18022933 C A MYO15A Silent p.P273P 0.37 TCGA-F1-6177-01 17 18154602 18154602 C T FLII Missense_Mutation p.A525T 0.51 deleterious(0.01) probably_damaging(0.952) TCGA-F1-6177-01 17 18631016 18631016 G T TRIM16L Missense_Mutation p.S49I 0.38 tolerated(0.42) benign(0.001) TCGA-F1-6177-01 17 18707468 18707468 T C TVP23B Silent p.G160G 0.44 TCGA-F1-6177-01 17 18923170 18923170 G A SLC5A10 Missense_Mutation p.A535T 0.59 deleterious(0.01) benign(0.063) TCGA-F1-6177-01 17 20108291 20108291 G A SPECC1 Missense_Mutation p.R310Q 0.42 tolerated(0.17) benign(0.185) TCGA-F1-6177-01 17 21101945 21101945 C T TMEM11 Missense_Mutation p.A91T 0.40 tolerated(0.32) benign(0.003) TCGA-F1-6177-01 17 2238058 2238058 C A TSR1 Missense_Mutation p.G230V 0.50 tolerated(0.41) benign(0.005) TCGA-F1-6177-01 17 2570463 2570463 G A PAFAH1B1 Missense_Mutation p.V124I 0.38 deleterious(0.01) benign(0.232) TCGA-F1-6177-01 17 26694831 26694831 C T CTB-96E2.2 Missense_Mutation p.S68N 0.36 tolerated(0.38) possibly_damaging(0.673) TCGA-F1-6177-01 17 26883896 26883896 G A PIGS Silent p.G343G 0.58 TCGA-F1-6177-01 17 26901099 26901099 G T ALDOC Missense_Mutation p.P262H 0.44 deleterious(0) probably_damaging(1) TCGA-F1-6177-01 17 27446378 27446378 G A MYO18A Silent p.L602L 0.22 TCGA-F1-6177-01 17 2808601 2808601 C T RAP1GAP2 Missense_Mutation p.S35L 0.42 tolerated(0.2) benign(0.047) TCGA-F1-6177-01 17 28511866 28511866 G T NSRP1 Missense_Mutation p.R284M 0.35 deleterious(0.02) benign(0.064) TCGA-F1-6177-01 17 31107788 31107788 C T MYO1D Missense_Mutation p.R37H 0.32 tolerated(0.07) benign(0.189) TCGA-F1-6177-01 17 32583268 32583268 G A CCL2 Missense_Mutation p.C35Y 0.43 deleterious(0) probably_damaging(0.986) TCGA-F1-6177-01 17 33520747 33520747 C T SLC35G3 Missense_Mutation p.V194M 0.38 deleterious(0.04) benign(0.307) TCGA-F1-6177-01 17 33771844 33771844 A - SLFN13 Frame_Shift_Del p.C286Afs*7 0.18 TCGA-F1-6177-01 17 33984642 33984642 T C AP2B1 Silent p.V607V 0.27 TCGA-F1-6177-01 17 34249635 34249635 C T RDM1 Missense_Mutation p.A205T 0.39 deleterious(0) probably_damaging(0.957) TCGA-F1-6177-01 17 3572580 3572580 C T EMC6 Missense_Mutation p.T47I 0.38 deleterious(0) probably_damaging(0.986) TCGA-F1-6177-01 17 36708254 36708254 G - SRCIN1 Frame_Shift_Del p.S866Afs*4 0.24 TCGA-F1-6177-01 17 37565661 37565661 C T MED1 Missense_Mutation p.G938D 0.28 deleterious_low_confidence(0) possibly_damaging(0.499) TCGA-F1-6177-01 17 37815758 37815758 G T STARD3 Silent p.V249V 0.41 TCGA-F1-6177-01 17 37884352 37884352 C G ERBB2 3'UTR 0.37 TCGA-F1-6177-01 17 38854446 38854446 T - KRT24 3'UTR 0.40 TCGA-F1-6177-01 17 39140460 39140460 T C KRT40 Silent p.A22A 0.45 TCGA-F1-6177-01 17 3966183 3966183 C T ZZEF1 Missense_Mutation p.A1583T 0.30 tolerated(0.2) benign(0.063) TCGA-F1-6177-01 17 40010508 40010508 C T KLHL11 Silent p.V537V 0.46 TCGA-F1-6177-01 17 40255748 40255748 C T DHX58 Silent p.R544R 0.34 TCGA-F1-6177-01 17 40825750 40825750 C T PLEKHH3 Missense_Mutation p.S134N 0.40 tolerated(0.06) unknown(0) TCGA-F1-6177-01 17 41297124 41297124 A - NBR2 3'Flank 0.38 TCGA-F1-6177-01 17 41958079 41958079 C T MPP2 Missense_Mutation p.R377H 0.41 tolerated(0.06) benign(0.016) TCGA-F1-6177-01 17 42225763 42225763 A - C17orf53 Frame_Shift_Del p.A200Pfs*3 0.34 TCGA-F1-6177-01 17 42338116 42338116 G A SLC4A1 Missense_Mutation p.A79V 0.43 deleterious(0) benign(0.039) TCGA-F1-6177-01 17 42452962 42452962 G A ITGA2B Silent p.L908L 0.50 TCGA-F1-6177-01 17 42457392 42457392 T C ITGA2B Missense_Mutation p.H577R 0.40 tolerated(0.34) benign(0.005) TCGA-F1-6177-01 17 42483339 42483339 T - GPATCH8 Frame_Shift_Del p.A192Pfs*32 0.27 TCGA-F1-6177-01 17 43005605 43005605 C T KIF18B Missense_Mutation p.V689I 0.28 tolerated(1) benign(0.002) TCGA-F1-6177-01 17 43044936 43044936 C T C1QL1 Missense_Mutation p.A161T 0.06 tolerated(0.11) benign(0.166) TCGA-F1-6177-01 17 44101592 44101592 A - MAPT 3'UTR 0.46 TCGA-F1-6177-01 17 44109601 44109601 G - KANSL1 Frame_Shift_Del p.Q968Sfs*46 0.37 TCGA-F1-6177-01 17 4442643 4442643 A T MYBBP1A Intron 0.27 TCGA-F1-6177-01 17 4496330 4496330 G A SMTNL2 Silent p.T198T 0.38 TCGA-F1-6177-01 17 45368474 45368474 G A ITGB3 Intron 0.40 TCGA-F1-6177-01 17 46002810 46002810 G A SP2 Silent p.L548L 0.41 TCGA-F1-6177-01 17 47237944 47237944 C T B4GALNT2 Missense_Mutation p.A296V 0.14 tolerated(0.08) benign(0.125) TCGA-F1-6177-01 17 47284191 47284191 G A GNGT2 Silent p.N46N 0.41 TCGA-F1-6177-01 17 4804101 4804101 G A CHRNE Missense_Mutation p.P302S 0.13 deleterious(0) probably_damaging(1) TCGA-F1-6177-01 17 48263139 48263139 C T COL1A1 Silent p.T1416T 0.43 TCGA-F1-6177-01 17 48433967 48433967 C - XYLT2 Frame_Shift_Del p.G529Afs*78 0.36 TCGA-F1-6177-01 17 48684339 48684339 G A CACNA1G Missense_Mutation p.V1501M 0.21 deleterious(0) probably_damaging(0.999) TCGA-F1-6177-01 17 4883674 4883674 G A CAMTA2 Nonsense_Mutation p.R338* 0.31 TCGA-F1-6177-01 17 49057239 49057239 G A SPAG9 Nonsense_Mutation p.R1093* 0.19 TCGA-F1-6177-01 17 49067893 49067893 A G SPAG9 Silent p.V845V 0.42 TCGA-F1-6177-01 17 5073913 5073913 A G USP6 Silent p.S1219S 0.47 TCGA-F1-6177-01 17 5425092 5425092 T C NLRP1 Missense_Mutation p.T1179A 0.40 tolerated(0.07) possibly_damaging(0.542) TCGA-F1-6177-01 17 56272511 56272511 C - EPX Frame_Shift_Del p.C263Afs*140 0.30 TCGA-F1-6177-01 17 56389688 56389688 G A BZRAP1 Nonsense_Mutation p.R832* 0.43 TCGA-F1-6177-01 17 56620549 56620549 G A C17orf47 Silent p.R333R 0.39 TCGA-F1-6177-01 17 57682875 57682875 C T DHX40 Silent p.Y680Y 0.39 TCGA-F1-6177-01 17 58262986 58262986 C A USP32 Missense_Mutation p.E1223D 0.39 deleterious(0.04) probably_damaging(0.987) TCGA-F1-6177-01 17 60503764 60503764 C T METTL2A Silent p.L103L 0.46 TCGA-F1-6177-01 17 60768444 60768444 G A MRC2 Missense_Mutation p.A1383T 0.32 tolerated(0.05) benign(0.013) TCGA-F1-6177-01 17 60879085 60879085 G A MARCH10 Silent p.D4D 0.40 TCGA-F1-6177-01 17 61574216 61574216 G A ACE Silent p.T1187T 0.47 TCGA-F1-6177-01 17 62041916 62041916 T C SCN4A Missense_Mutation p.E455G 0.32 deleterious(0) benign(0.075) TCGA-F1-6177-01 17 62149396 62149396 C T ERN1 Silent p.S141S 0.64 TCGA-F1-6177-01 17 62541846 62541855 AAAAAAGGGG - SMURF2 3'UTR 0.43 TCGA-F1-6177-01 17 62796312 62796312 C T PLEKHM1P RNA 0.26 TCGA-F1-6177-01 17 64881248 64881248 G A CACNG5 Missense_Mutation p.G240D 0.12 deleterious(0) probably_damaging(0.912) TCGA-F1-6177-01 17 6547714 6547714 T - MED31 3'UTR 0.35 TCGA-F1-6177-01 17 65944266 65944266 A - BPTF Frame_Shift_Del p.K2592Nfs*36 0.37 TCGA-F1-6177-01 17 707017 707017 C T NXN Missense_Mutation p.A344T 0.48 deleterious(0.03) possibly_damaging(0.833) TCGA-F1-6177-01 17 71084850 71084850 G A SLC39A11 Silent p.T18T 0.29 TCGA-F1-6177-01 17 71389713 71389713 C T SDK2 Missense_Mutation p.R1295Q 0.40 tolerated(0.17) probably_damaging(0.992) TCGA-F1-6177-01 17 7139763 7139764 - G PHF23 Frame_Shift_Ins p.A162Cfs*70 0.32 TCGA-F1-6177-01 17 71427647 71427647 C T SDK2 Missense_Mutation p.V492I 0.35 deleterious(0.03) possibly_damaging(0.757) TCGA-F1-6177-01 17 7219602 7219602 G A NEURL4 Missense_Mutation p.A1510V 0.41 tolerated(0.16) benign(0.011) TCGA-F1-6177-01 17 7226379 7226379 C T NEURL4 Silent p.A827A 0.09 TCGA-F1-6177-01 17 72344014 72344014 C T KIF19 Silent p.G341G 0.44 TCGA-F1-6177-01 17 72356374 72356374 G A BTBD17 Silent p.A32A 0.62 TCGA-F1-6177-01 17 7330257 7330257 G A C17orf74 Missense_Mutation p.R316H 0.45 tolerated(0.13) probably_damaging(0.923) TCGA-F1-6177-01 17 73487495 73487495 C A KIAA0195 Missense_Mutation p.L449I 0.32 deleterious(0.02) possibly_damaging(0.731) TCGA-F1-6177-01 17 73488711 73488711 C A KIAA0195 Missense_Mutation p.L585M 0.41 deleterious(0) probably_damaging(0.999) TCGA-F1-6177-01 17 73491063 73491063 C - KIAA0195 Frame_Shift_Del p.S895Pfs*13 0.30 TCGA-F1-6177-01 17 73627305 73627305 G A RECQL5 Silent p.S491S 0.41 TCGA-F1-6177-01 17 73729750 73729750 G A ITGB4 Missense_Mutation p.R545H 0.52 deleterious(0.01) probably_damaging(0.977) TCGA-F1-6177-01 17 73805973 73805973 C T UNK Silent p.D79D 0.20 TCGA-F1-6177-01 17 73895038 73895038 G A MRPL38 Missense_Mutation p.R346W 0.26 tolerated(0.19) benign(0.022) TCGA-F1-6177-01 17 74003199 74003199 C T EVPL Silent p.P2029P 0.32 TCGA-F1-6177-01 17 7405890 7405890 G A POLR2A Missense_Mutation p.D876N 0.35 probably_damaging(1) TCGA-F1-6177-01 17 74077588 74077588 C - EXOC7 3'Flank 0.26 TCGA-F1-6177-01 17 74079821 74079821 C T EXOC7 Missense_Mutation p.V706M 0.37 tolerated(0.12) benign(0.095) TCGA-F1-6177-01 17 74133820 74133820 G A FOXJ1 Missense_Mutation p.P294S 0.52 tolerated(0.1) benign(0.022) TCGA-F1-6177-01 17 7796827 7796827 C - CHD3 Frame_Shift_Del p.P305Lfs*49 0.42 TCGA-F1-6177-01 17 78081640 78081640 G A GAA Silent p.A300A 0.24 TCGA-F1-6177-01 17 7809229 7809229 G - CHD3 Frame_Shift_Del p.M1488Cfs*16 0.37 TCGA-F1-6177-01 17 7917940 7917940 C T GUCY2D Missense_Mutation p.R812W 0.36 deleterious(0) probably_damaging(0.999) TCGA-F1-6177-01 17 79180662 79180662 G A AZI1 Missense_Mutation p.P133S 0.44 deleterious(0.01) possibly_damaging(0.69) TCGA-F1-6177-01 17 7919132 7919132 G A GUCY2D Missense_Mutation p.A1006T 0.33 deleterious(0.04) probably_damaging(0.97) TCGA-F1-6177-01 17 80585121 80585121 T - WDR45B Frame_Shift_Del p.E97Dfs*23 0.33 TCGA-F1-6177-01 17 80788099 80788099 T - ZNF750 Frame_Shift_Del p.K697Nfs*87 0.29 TCGA-F1-6177-01 17 9596520 9596520 G A USP43 Missense_Mutation p.R477Q 0.33 tolerated(0.25) benign(0.086) TCGA-F1-6177-01 17 9846445 9846445 G A GAS7 Missense_Mutation p.R242W 0.39 deleterious(0) probably_damaging(0.971) TCGA-F1-6177-01 18 12356744 12356744 G A AFG3L2 Silent p.T371T 0.33 TCGA-F1-6177-01 18 21087004 21087004 A G C18orf8 Missense_Mutation p.T84A 0.44 deleterious(0.03) benign(0.116) TCGA-F1-6177-01 18 211172 211172 T C USP14 Missense_Mutation p.V458A 0.49 deleterious(0) probably_damaging(0.981) TCGA-F1-6177-01 18 21750331 21750331 T - OSBPL1A Frame_Shift_Del p.N793Mfs*15 0.32 TCGA-F1-6177-01 18 24039686 24039686 G A KCTD1 Silent p.I171I 0.41 TCGA-F1-6177-01 18 29264323 29264325 AGA - B4GALT6 In_Frame_Del p.F22del 0.33 TCGA-F1-6177-01 18 29648479 29648479 A G RNF125 3'UTR 0.36 TCGA-F1-6177-01 18 29972946 29972946 G A GAREM Silent p.C58C 0.48 TCGA-F1-6177-01 18 30349887 30349887 G A KLHL14 Missense_Mutation p.A223V 0.42 tolerated(0.5) possibly_damaging(0.507) TCGA-F1-6177-01 18 30913143 30913144 TT - CCDC178 Frame_Shift_Del p.K291Nfs*11 0.44 TCGA-F1-6177-01 18 33573116 33573116 A G RPRD1A Nonstop_Mutation p.*313Rext*18 0.42 TCGA-F1-6177-01 18 3879562 3879562 G A DLGAP1 Silent p.S169S 0.36 TCGA-F1-6177-01 18 42281746 42281746 A - SETBP1 Frame_Shift_Del p.N147Ifs*60 0.29 TCGA-F1-6177-01 18 44560119 44560119 C T TCEB3B Missense_Mutation p.R506H 0.38 tolerated(0.12) benign(0.374) TCGA-F1-6177-01 18 45567076 45567076 C - ZBTB7C Frame_Shift_Del p.E135Rfs*87 0.37 TCGA-F1-6177-01 18 46284514 46284514 A G CTIF Missense_Mutation p.N270S 0.37 tolerated_low_confidence(0.09) benign(0.002) TCGA-F1-6177-01 18 51904599 51904599 C T C18orf54 Missense_Mutation p.R368W 0.36 deleterious(0) benign(0.002) TCGA-F1-6177-01 18 52899754 52899754 A C TCF4 Silent p.T647T 0.46 TCGA-F1-6177-01 18 54349956 54349956 G A WDR7 Missense_Mutation p.C131Y 0.46 deleterious(0) possibly_damaging(0.794) TCGA-F1-6177-01 18 54591291 54591291 T C WDR7 Missense_Mutation p.L1222P 0.44 deleterious(0) probably_damaging(0.999) TCGA-F1-6177-01 18 55329760 55329760 A - ATP8B1 Frame_Shift_Del p.P792Hfs*8 0.35 TCGA-F1-6177-01 18 56148963 56148963 T C ALPK2 3'UTR 0.33 TCGA-F1-6177-01 18 56648737 56648737 G A ZNF532 Missense_Mutation p.R1100H 0.44 tolerated(0.12) probably_damaging(0.999) TCGA-F1-6177-01 18 63547737 63547737 C T CDH7 Silent p.D655D 0.44 TCGA-F1-6177-01 18 6955369 6955369 C T LAMA1 Silent p.Q2730Q 0.12 TCGA-F1-6177-01 18 70209141 70209141 G A CBLN2 Silent p.S85S 0.19 TCGA-F1-6177-01 18 7036056 7036056 G A LAMA1 Missense_Mutation p.T590M 0.49 deleterious(0) probably_damaging(0.982) TCGA-F1-6177-01 18 70451000 70451000 G A NETO1 Missense_Mutation p.R261C 0.42 tolerated(0.06) possibly_damaging(0.479) TCGA-F1-6177-01 18 72223581 72223581 C A CNDP1 Silent p.S11S 0.30 TCGA-F1-6177-01 18 74091962 74091962 G A ZNF516 Missense_Mutation p.T703M 0.40 deleterious(0.03) possibly_damaging(0.454) TCGA-F1-6177-01 18 77137342 77137342 C T ATP9B Missense_Mutation p.R1135C 0.46 deleterious(0) possibly_damaging(0.899) TCGA-F1-6177-01 18 77489024 77489024 G T CTDP1 Silent p.P845P 0.46 TCGA-F1-6177-01 18 77918087 77918087 G A PARD6G Missense_Mutation p.T233M 0.56 deleterious(0) probably_damaging(0.997) TCGA-F1-6177-01 18 9887814 9887814 G - TXNDC2 Frame_Shift_Del p.D448Tfs*3 0.26 TCGA-F1-6177-01 19 1037928 1037928 G A CNN2 3'UTR 0.37 TCGA-F1-6177-01 19 10908058 10908058 C T DNM2 Missense_Mutation p.T400M 0.38 deleterious(0.01) probably_damaging(0.996) TCGA-F1-6177-01 19 11022862 11022862 C T CARM1 Silent p.I187I 0.37 TCGA-F1-6177-01 19 11686097 11686097 G T ACP5 Intron 0.62 TCGA-F1-6177-01 19 1231206 1231206 C - C19orf26 Frame_Shift_Del p.D350Mfs*40 0.31 TCGA-F1-6177-01 19 12386785 12386785 T G ZNF44 Missense_Mutation p.N87T 0.36 deleterious(0) probably_damaging(0.998) TCGA-F1-6177-01 19 12501627 12501627 C T ZNF799 Missense_Mutation p.E529K 0.40 tolerated(0.07) probably_damaging(0.998) TCGA-F1-6177-01 19 1272594 1272594 G A CIRBP 3'UTR 0.43 TCGA-F1-6177-01 19 12939701 12939701 C T RTBDN Missense_Mutation p.C111Y 0.47 deleterious(0.02) possibly_damaging(0.833) TCGA-F1-6177-01 19 1387831 1387831 G A NDUFS7 Missense_Mutation p.R13Q 0.22 tolerated_low_confidence(0.64) benign(0.002) TCGA-F1-6177-01 19 13988417 13988417 C T NANOS3 Missense_Mutation p.R119C 0.32 tolerated(0.09) probably_damaging(0.939) TCGA-F1-6177-01 19 14163010 14163010 G A IL27RA Missense_Mutation p.A607T 0.19 tolerated(0.44) benign(0.011) TCGA-F1-6177-01 19 1487292 1487292 T C PCSK4 Missense_Mutation p.T235A 0.33 tolerated(0.12) benign(0.02) TCGA-F1-6177-01 19 15512127 15512127 C T AKAP8L Missense_Mutation p.R217Q 0.08 tolerated(0.06) probably_damaging(0.93) TCGA-F1-6177-01 19 16199871 16199873 GAA - TPM4 In_Frame_Del p.E196del 0.35 TCGA-F1-6177-01 19 16910892 16910892 G A NWD1 Missense_Mutation p.A1219T 0.47 tolerated(0.17) benign(0.416) TCGA-F1-6177-01 19 16989157 16989157 G A SIN3B Missense_Mutation p.E1072K 0.39 deleterious(0.01) probably_damaging(0.957) TCGA-F1-6177-01 19 17186232 17186232 T - HAUS8 Frame_Shift_Del p.M1? 0.33 TCGA-F1-6177-01 19 17338803 17338803 C - OCEL1 Frame_Shift_Del p.Q204Kfs*18 0.32 TCGA-F1-6177-01 19 17608192 17608192 G A SLC27A1 Silent p.T375T 0.49 TCGA-F1-6177-01 19 17679462 17679462 C A COLGALT1 Missense_Mutation p.P257T 0.41 tolerated(0.08) benign(0.002) TCGA-F1-6177-01 19 17768952 17768952 C T UNC13A Missense_Mutation p.R229H 0.26 tolerated_low_confidence(0.25) benign(0.375) TCGA-F1-6177-01 19 1795906 1795906 C - ATP8B3 Frame_Shift_Del p.A675Qfs*97 0.30 TCGA-F1-6177-01 19 18499542 18499542 G A GDF15 Missense_Mutation p.G242S 0.70 deleterious(0) probably_damaging(1) TCGA-F1-6177-01 19 19115218 19115218 G C SUGP2 Missense_Mutation p.D896E 0.49 tolerated(1) benign(0.001) TCGA-F1-6177-01 19 19206971 19206971 A G SLC25A42 Missense_Mutation p.H13R 0.36 tolerated(0.64) benign(0) TCGA-F1-6177-01 19 19231610 19231610 G T TMEM161A Missense_Mutation p.L384I 0.32 deleterious(0.01) probably_damaging(0.936) TCGA-F1-6177-01 19 19260102 19260102 C T MEF2B Missense_Mutation p.R64H 0.36 deleterious(0) probably_damaging(0.988) TCGA-F1-6177-01 19 19313841 19313841 G A NR2C2AP Missense_Mutation p.T10I 0.42 deleterious(0) benign(0.299) TCGA-F1-6177-01 19 19329894 19329894 C T NCAN Missense_Mutation p.R82W 0.39 deleterious(0.03) probably_damaging(1) TCGA-F1-6177-01 19 19655681 19655681 G A CILP2 Missense_Mutation p.R776H 0.44 deleterious(0) probably_damaging(0.967) TCGA-F1-6177-01 19 1986400 1986400 C T BTBD2 3'UTR 0.34 TCGA-F1-6177-01 19 20235921 20235921 G A CTC-260E6.2 RNA 0.20 TCGA-F1-6177-01 19 2102153 2102153 C T AP3D1 3'UTR 0.33 TCGA-F1-6177-01 19 21132705 21132705 C T ZNF85 Missense_Mutation p.A462V 0.17 deleterious(0.05) benign(0.19) TCGA-F1-6177-01 19 21991748 21991748 T C ZNF43 Missense_Mutation p.H364R 0.42 deleterious(0) probably_damaging(0.972) TCGA-F1-6177-01 19 2216574 2216574 G A DOT1L Missense_Mutation p.A740T 0.46 tolerated_low_confidence(0.31) probably_damaging(0.991) TCGA-F1-6177-01 19 2226423 2226423 G - DOT1L Frame_Shift_Del p.A1303Lfs*24 0.41 TCGA-F1-6177-01 19 22817247 22817247 A G ZNF492 5'UTR 0.56 TCGA-F1-6177-01 19 2290788 2290788 G A LINGO3 Missense_Mutation p.L330F 0.69 deleterious(0) probably_damaging(1) TCGA-F1-6177-01 19 2352963 2352963 C T LLfos-48D6.1 Intron 0.48 TCGA-F1-6177-01 19 31767688 31767688 C T TSHZ3 Missense_Mutation p.R1004Q 0.48 deleterious(0.01) possibly_damaging(0.677) TCGA-F1-6177-01 19 33984235 33984235 G A PEPD Silent p.S134S 0.30 TCGA-F1-6177-01 19 34833300 34833300 C T KIAA0355 Missense_Mutation p.R821C 0.10 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-F1-6177-01 19 35940790 35940790 G C FFAR2 Silent p.L58L 0.41 TCGA-F1-6177-01 19 3600160 3600160 G A TBXA2R Missense_Mutation p.A158V 0.35 tolerated(0.28) benign(0.016) TCGA-F1-6177-01 19 3614486 3614486 C T CACTIN Missense_Mutation p.E422K 0.50 tolerated(0.16) possibly_damaging(0.553) TCGA-F1-6177-01 19 36271872 36271872 C T ARHGAP33 Missense_Mutation p.R294C 0.43 deleterious_low_confidence(0.01) possibly_damaging(0.835) TCGA-F1-6177-01 19 3633149 3633149 G - PIP5K1C 3'UTR 0.30 TCGA-F1-6177-01 19 36340038 36340038 C T NPHS1 Silent p.P284P 0.42 TCGA-F1-6177-01 19 3759909 3759909 G A APBA3 Silent p.C118C 0.35 TCGA-F1-6177-01 19 3779034 3779034 G A MATK Missense_Mutation p.R386W 0.42 deleterious(0) probably_damaging(0.953) TCGA-F1-6177-01 19 38126847 38126847 C T ZFP30 Missense_Mutation p.A199T 0.34 tolerated(0.12) benign(0.379) TCGA-F1-6177-01 19 38610116 38610116 G A SIPA1L3 Missense_Mutation p.R821H 0.43 deleterious(0.02) probably_damaging(0.945) TCGA-F1-6177-01 19 38877383 38877383 C T GGN Silent p.P173P 0.26 TCGA-F1-6177-01 19 39104547 39104547 C T MAP4K1 Missense_Mutation p.R169H 0.50 deleterious(0) probably_damaging(0.939) TCGA-F1-6177-01 19 39398124 39398124 C T NFKBIB Missense_Mutation p.A265V 0.33 deleterious(0) probably_damaging(0.947) TCGA-F1-6177-01 19 39667343 39667343 C A PAK4 Silent p.P491P 0.33 TCGA-F1-6177-01 19 40328360 40328360 T C FBL Missense_Mutation p.M225V 0.48 deleterious(0.01) benign(0.046) TCGA-F1-6177-01 19 40398289 40398289 G A FCGBP Silent p.G2226G 0.31 TCGA-F1-6177-01 19 40882619 40882619 C T PLD3 Missense_Mutation p.R375W 0.28 deleterious(0) probably_damaging(0.953) TCGA-F1-6177-01 19 40947898 40947898 C A SERTAD3 Missense_Mutation p.Q30H 0.35 tolerated(0.13) probably_damaging(0.979) TCGA-F1-6177-01 19 41008724 41008724 G A SPTBN4 Missense_Mutation p.A416T 0.08 deleterious(0.01) benign(0.402) TCGA-F1-6177-01 19 41510273 41510273 G A CYP2B6 Missense_Mutation p.G136R 0.21 deleterious(0) probably_damaging(0.999) TCGA-F1-6177-01 19 41522636 41522636 C T CYP2B6 Silent p.A460A 0.50 TCGA-F1-6177-01 19 42794441 42794441 C - CIC Frame_Shift_Del p.P509Hfs*14 0.37 TCGA-F1-6177-01 19 42813645 42813645 G A PRR19 5'UTR 0.45 TCGA-F1-6177-01 19 42813800 42813800 C T PRR19 Missense_Mutation p.R22C 0.46 deleterious(0) probably_damaging(0.999) TCGA-F1-6177-01 19 4329976 4329976 C T STAP2 Missense_Mutation p.R146H 0.31 deleterious(0) probably_damaging(0.997) TCGA-F1-6177-01 19 43430100 43430100 C T PSG7 Silent p.A356A 0.42 TCGA-F1-6177-01 19 43441204 43441204 A G PSG7 Missense_Mutation p.C9R 0.38 tolerated(0.33) benign(0.012) TCGA-F1-6177-01 19 44056299 44056300 - C XRCC1 Frame_Shift_Ins p.K318Efs*24 0.27 TCGA-F1-6177-01 19 4409287 4409287 T C CHAF1A Missense_Mutation p.I164T 0.38 tolerated_low_confidence(0.45) benign(0.152) TCGA-F1-6177-01 19 45385573 45385573 G A PVRL2 Missense_Mutation p.R383Q 0.47 deleterious(0.01) possibly_damaging(0.476) TCGA-F1-6177-01 19 4552637 4552637 G A SEMA6B Silent p.R262R 0.48 TCGA-F1-6177-01 19 45996513 45996513 G - RTN2 Frame_Shift_Del p.P313Lfs*9 0.32 TCGA-F1-6177-01 19 46027364 46027364 G A VASP Missense_Mutation p.R307Q 0.27 deleterious(0.04) possibly_damaging(0.701) TCGA-F1-6177-01 19 46027366 46027366 A C VASP Silent p.R308R 0.28 TCGA-F1-6177-01 19 46216376 46216376 G A FBXO46 Silent p.S126S 0.39 TCGA-F1-6177-01 19 46289337 46289337 C T DMWD Missense_Mutation p.A473T 0.38 tolerated(0.51) benign(0) TCGA-F1-6177-01 19 46857176 46857176 G A PPP5C Missense_Mutation p.G98D 0.62 deleterious(0) probably_damaging(0.988) TCGA-F1-6177-01 19 47282088 47282088 C T SLC1A5 Missense_Mutation p.R301H 0.18 deleterious(0.01) benign(0.329) TCGA-F1-6177-01 19 47935695 47935695 C G SLC8A2 Missense_Mutation p.E706D 0.05 tolerated(1) benign(0.009) TCGA-F1-6177-01 19 49136701 49136703 CTT - DBP In_Frame_Del p.K254del 0.36 TCGA-F1-6177-01 19 49164851 49164851 C T NTN5 3'UTR 0.38 TCGA-F1-6177-01 19 49535283 49535283 C T CGB2 5'UTR 0.43 TCGA-F1-6177-01 19 49934362 49934362 G A SLC17A7 Silent p.Y433Y 0.43 TCGA-F1-6177-01 19 50098867 50098867 C T PRR12 Silent p.A425A 0.88 TCGA-F1-6177-01 19 50099458 50099458 G A PRR12 Silent p.S622S 0.28 TCGA-F1-6177-01 19 50158042 50158042 C - SCAF1 Frame_Shift_Del p.T1181Pfs*28 0.47 TCGA-F1-6177-01 19 50796825 50796825 G T MYH14 Missense_Mutation p.A1784S 0.19 tolerated(0.56) benign(0.09) TCGA-F1-6177-01 19 50961966 50961966 G A MYBPC2 Missense_Mutation p.E821K 0.45 tolerated(0.69) benign(0.005) TCGA-F1-6177-01 19 51220126 51220126 G A SHANK1 Silent p.S17S 0.45 TCGA-F1-6177-01 19 51330304 51330304 C T KLK15 Missense_Mutation p.R104H 0.41 tolerated(0.07) benign(0.027) TCGA-F1-6177-01 19 5208389 5208389 C T PTPRS Missense_Mutation p.R1834Q 0.36 deleterious(0) possibly_damaging(0.647) TCGA-F1-6177-01 19 52955069 52955069 A - ZNF578 5'Flank 0.43 TCGA-F1-6177-01 19 53473151 53473151 C T ZNF702P RNA 0.38 TCGA-F1-6177-01 19 53473884 53473885 - T CTD-2620I22.1 RNA 0.33 TCGA-F1-6177-01 19 54182264 54182264 C T MIR515-1 RNA 0.30 TCGA-F1-6177-01 19 54662136 54662136 C T LENG1 Missense_Mutation p.A66T 0.42 tolerated(0.12) possibly_damaging(0.818) TCGA-F1-6177-01 19 54742915 54742915 C T LILRA6 Missense_Mutation p.A454T 0.25 tolerated(0.05) benign(0.017) TCGA-F1-6177-01 19 55450647 55450647 C T NLRP7 Missense_Mutation p.D514N 0.40 tolerated(0.89) benign(0.03) TCGA-F1-6177-01 19 55494233 55494233 G A NLRP2 Silent p.A389A 0.21 TCGA-F1-6177-01 19 55672059 55672059 C - DNAAF3 Frame_Shift_Del p.D401Tfs*74 0.28 TCGA-F1-6177-01 19 55994334 55994334 C T ZNF628 Missense_Mutation p.R592W 0.38 deleterious(0) probably_damaging(0.988) TCGA-F1-6177-01 19 56226424 56226424 A C NLRP9 Missense_Mutation p.L833R 0.14 deleterious(0) benign(0.269) TCGA-F1-6177-01 19 56307593 56307593 G A NLRP11 Missense_Mutation p.A732V 0.21 tolerated(0.14) benign(0.437) TCGA-F1-6177-01 19 57133494 57133494 G A ZNF71 Missense_Mutation p.S280N 0.33 tolerated(0.19) probably_damaging(0.956) TCGA-F1-6177-01 19 58850459 58850459 C T ZSCAN22 Nonsense_Mutation p.R415* 0.53 TCGA-F1-6177-01 19 58864812 58864812 C T A1BG 5'UTR 0.40 TCGA-F1-6177-01 19 58967425 58967425 G A ZNF324B Missense_Mutation p.A372T 0.36 tolerated(0.52) possibly_damaging(0.477) TCGA-F1-6177-01 19 58982534 58982534 T C ZNF324 Silent p.G225G 0.44 TCGA-F1-6177-01 19 58982539 58982539 T C ZNF324 Missense_Mutation p.V227A 0.38 tolerated(0.89) benign(0) TCGA-F1-6177-01 19 58988598 58988598 C T ZNF446 Silent p.L5L 0.38 TCGA-F1-6177-01 19 605125 605125 T C HCN2 Missense_Mutation p.M374T 0.38 deleterious(0) probably_damaging(0.954) TCGA-F1-6177-01 19 621231 621231 C G POLRMT Missense_Mutation p.A823P 0.54 deleterious(0) probably_damaging(0.98) TCGA-F1-6177-01 19 6429808 6429808 G T SLC25A41 Missense_Mutation p.P184Q 0.43 tolerated(0.59) possibly_damaging(0.544) TCGA-F1-6177-01 19 6466882 6466882 G C CRB3 Intron 0.46 TCGA-F1-6177-01 19 6495747 6495747 C T TUBB4A Missense_Mutation p.V255I 0.48 deleterious_low_confidence(0.02) probably_damaging(0.994) TCGA-F1-6177-01 19 7184342 7184342 G A INSR Missense_Mutation p.T320M 0.16 tolerated(0.21) probably_damaging(0.92) TCGA-F1-6177-01 19 746652 746652 G A PALM Silent p.A334A 0.47 TCGA-F1-6177-01 19 7620635 7620635 C T PNPLA6 Missense_Mutation p.R1037W 0.49 deleterious(0) probably_damaging(0.946) TCGA-F1-6177-01 19 7687526 7687526 G A XAB2 Missense_Mutation p.R465C 0.34 deleterious(0) possibly_damaging(0.587) TCGA-F1-6177-01 19 8028348 8028348 A - ELAVL1 3'UTR 0.43 TCGA-F1-6177-01 19 8533700 8533700 C T HNRNPM Missense_Mutation p.R293C 0.37 deleterious(0.02) benign(0.03) TCGA-F1-6177-01 19 8609213 8609213 C T MYO1F Missense_Mutation p.A498T 0.34 tolerated(0.41) benign(0.006) TCGA-F1-6177-01 19 8982158 8982158 G A MUC16 Silent p.N14039N 0.25 TCGA-F1-6177-01 19 9057156 9057156 T C MUC16 Missense_Mutation p.H10097R 0.28 benign(0.003) TCGA-F1-6177-01 19 9067923 9067923 G T MUC16 Missense_Mutation p.T6508N 0.40 unknown(0) TCGA-F1-6177-01 19 9270837 9270837 C T ZNF317 Silent p.F172F 0.33 TCGA-F1-6177-01 19 984397 984397 C T WDR18 Missense_Mutation p.A15V 0.60 deleterious(0.01) benign(0.25) TCGA-F1-6177-01 19 9964945 9964945 C T OLFM2 Missense_Mutation p.A428T 0.40 deleterious(0.04) benign(0.212) TCGA-F1-6177-01 1 100606405 100606405 C T TRMT13 Intron 0.26 TCGA-F1-6177-01 1 104113183 104113183 G A AMY2B Intron 0.31 TCGA-F1-6177-01 1 10714031 10714031 G A CASZ1 Missense_Mutation p.R695W 0.43 deleterious(0) probably_damaging(1) TCGA-F1-6177-01 1 109553687 109553687 A G WDR47 Silent p.H334H 0.45 TCGA-F1-6177-01 1 110086476 110086476 C T GPR61 Missense_Mutation p.R278W 0.43 deleterious(0.04) possibly_damaging(0.636) TCGA-F1-6177-01 1 110768707 110768707 C T KCNC4 Missense_Mutation p.R576C 0.40 tolerated_low_confidence(0.09) benign(0.004) TCGA-F1-6177-01 1 110924293 110924293 C T SLC16A4 Silent p.V115V 0.29 TCGA-F1-6177-01 1 111969840 111969840 A G OVGP1 Intron 0.56 TCGA-F1-6177-01 1 112303777 112303777 A G DDX20 Intron 0.32 TCGA-F1-6177-01 1 11301720 11301720 C A MTOR Missense_Mutation p.Q477H 0.36 tolerated(0.26) benign(0.339) TCGA-F1-6177-01 1 114253067 114253067 G A PHTF1 Nonsense_Mutation p.R360* 0.30 TCGA-F1-6177-01 1 114254720 114254720 A G PHTF1 Silent p.L267L 0.35 TCGA-F1-6177-01 1 115006998 115006998 C T TRIM33 Missense_Mutation p.R180Q 0.31 deleterious(0) probably_damaging(0.99) TCGA-F1-6177-01 1 116311065 116311065 C T CASQ2 Missense_Mutation p.R33Q 0.44 deleterious(0) probably_damaging(0.998) TCGA-F1-6177-01 1 116519241 116519241 G A SLC22A15 5'UTR 0.16 TCGA-F1-6177-01 1 117659307 117659307 G A TRIM45 Missense_Mutation p.A428V 0.06 tolerated(0.17) benign(0.035) TCGA-F1-6177-01 1 118567980 118567980 G - SPAG17 Frame_Shift_Del p.Q1264Rfs*3 0.31 TCGA-F1-6177-01 1 11907422 11907422 C T NPPA Silent p.P66P 0.41 TCGA-F1-6177-01 1 13669140 13669140 A G PRAMEF14 Missense_Mutation p.L397P 0.47 deleterious(0) probably_damaging(1) TCGA-F1-6177-01 1 13695905 13695905 G T PRAMEF19 Missense_Mutation p.L354I 0.09 probably_damaging(0.997) TCGA-F1-6177-01 1 13719053 13719053 T G PRAMEF17 3'UTR 0.48 TCGA-F1-6177-01 1 14108436 14108436 C T PRDM2 Silent p.G1382G 0.45 TCGA-F1-6177-01 1 144904728 144904728 T C PDE4DIP Missense_Mutation p.M862V 0.45 tolerated(0.18) benign(0.03) TCGA-F1-6177-01 1 144915570 144915570 G A PDE4DIP Missense_Mutation p.R619C 0.29 deleterious(0.04) probably_damaging(0.981) TCGA-F1-6177-01 1 1451391 1451391 G T ATAD3A Splice_Site p.X69_splice 0.31 TCGA-F1-6177-01 1 145273222 145273222 C T NOTCH2NL Nonsense_Mutation p.R26* 0.08 TCGA-F1-6177-01 1 147095697 147095697 C T BCL9 Missense_Mutation p.P1073L 0.35 deleterious(0) benign(0.32) TCGA-F1-6177-01 1 148343747 148343747 G A NBPF20 Missense_Mutation p.R114W 0.40 benign(0.004) TCGA-F1-6177-01 1 148346797 148346797 G A NBPF20 Intron 0.22 TCGA-F1-6177-01 1 150131249 150131249 C - PLEKHO1 Frame_Shift_Del p.Q256Rfs*6 0.23 TCGA-F1-6177-01 1 150469093 150469093 C T TARS2 Missense_Mutation p.R304C 0.35 deleterious(0) probably_damaging(0.973) TCGA-F1-6177-01 1 150482172 150482172 C T ECM1 Nonsense_Mutation p.R53* 0.27 TCGA-F1-6177-01 1 151263693 151263693 G T ZNF687 3'UTR 0.44 TCGA-F1-6177-01 1 151374105 151374105 A G PSMB4 Missense_Mutation p.S261G 0.38 tolerated(0.09) benign(0) TCGA-F1-6177-01 1 153507086 153507086 A - S100A6 3'UTR 0.40 TCGA-F1-6177-01 1 153723713 153723713 C T INTS3 Missense_Mutation p.R243W 0.17 deleterious(0) possibly_damaging(0.859) TCGA-F1-6177-01 1 154557172 154557172 A - ADAR 3'UTR 0.42 TCGA-F1-6177-01 1 155257677 155257677 G A HCN3 Missense_Mutation p.R583Q 0.47 tolerated_low_confidence(1) benign(0.013) TCGA-F1-6177-01 1 155265486 155265486 C T PKLR Silent p.A115A 0.32 TCGA-F1-6177-01 1 155735156 155735156 C A GON4L Nonsense_Mutation p.E1370* 0.40 TCGA-F1-6177-01 1 1559285 1559285 G A MIB2 Missense_Mutation p.A242T 0.36 tolerated(0.66) benign(0.013) TCGA-F1-6177-01 1 1560527 1560527 C T MIB2 Missense_Mutation p.A343V 0.13 tolerated(0.31) benign(0.207) TCGA-F1-6177-01 1 156255497 156255498 - C TMEM79 Frame_Shift_Ins p.R163Pfs*9 0.33 TCGA-F1-6177-01 1 156675181 156675181 G A CRABP2 Missense_Mutation p.L20F 0.31 deleterious(0) probably_damaging(0.997) TCGA-F1-6177-01 1 156694023 156694023 G - ISG20L2 Frame_Shift_Del p.L289Sfs*15 0.38 TCGA-F1-6177-01 1 157105396 157105396 G A ETV3 Missense_Mutation p.R51C 0.38 deleterious(0.01) possibly_damaging(0.74) TCGA-F1-6177-01 1 158450438 158450438 G A OR10R2 Silent p.A257A 0.43 TCGA-F1-6177-01 1 158669736 158669736 C T OR6K2 Missense_Mutation p.R236H 0.41 tolerated(0.43) benign(0.006) TCGA-F1-6177-01 1 158817665 158817665 C T MNDA Missense_Mutation p.R379C 0.41 tolerated(0.11) possibly_damaging(0.528) TCGA-F1-6177-01 1 15905524 15905524 C T AGMAT Missense_Mutation p.V184M 0.38 deleterious(0) probably_damaging(0.994) TCGA-F1-6177-01 1 160012018 160012018 G - KCNJ10 Frame_Shift_Del p.P102Rfs*96 0.30 TCGA-F1-6177-01 1 160100380 160100380 G A ATP1A2 Missense_Mutation p.G607D 0.32 deleterious(0) probably_damaging(1) TCGA-F1-6177-01 1 161681180 161681180 G A FCRLA Missense_Mutation p.G162R 0.48 deleterious(0) probably_damaging(1) TCGA-F1-6177-01 1 162335235 162335235 G A RP11-565P22.6 Silent p.A13A 0.40 TCGA-F1-6177-01 1 162470791 162470791 C A UHMK1 Missense_Mutation p.T217K 0.45 tolerated(0.09) benign(0.037) TCGA-F1-6177-01 1 16462199 16462199 G - EPHA2 Frame_Shift_Del p.P460Rfs*33 0.31 TCGA-F1-6177-01 1 16725948 16725950 TCT - SPATA21 In_Frame_Del p.K414del 0.50 TCGA-F1-6177-01 1 1685595 1685595 C A NADK Silent p.G477G 0.35 TCGA-F1-6177-01 1 169366580 169366580 T - CCDC181 Frame_Shift_Del p.K421Sfs*6 0.45 TCGA-F1-6177-01 1 169677835 169677835 A G SELL Silent p.V78V 0.50 TCGA-F1-6177-01 1 169822808 169822808 T A C1orf112 3'UTR 0.48 TCGA-F1-6177-01 1 170955773 170955773 A G MROH9 Silent p.S267S 0.46 TCGA-F1-6177-01 1 179079790 179079790 T C ABL2 Intron 0.52 TCGA-F1-6177-01 1 17983195 17983195 G A ARHGEF10L Missense_Mutation p.R951Q 0.33 tolerated(0.06) benign(0.086) TCGA-F1-6177-01 1 180165944 180165944 C T QSOX1 Silent p.G672G 0.37 TCGA-F1-6177-01 1 181708297 181708298 - T CACNA1E Frame_Shift_Ins p.L1210Ffs*128 0.30 TCGA-F1-6177-01 1 186280259 186280259 T - PRG4 Frame_Shift_Del p.F1199Lfs*25 0.33 TCGA-F1-6177-01 1 190068210 190068210 G A BRINP3 Silent p.N413N 0.48 TCGA-F1-6177-01 1 19609292 19609292 G A AKR7A3 Missense_Mutation p.A310V 0.35 tolerated(0.21) benign(0.083) TCGA-F1-6177-01 1 198222297 198222298 - A NEK7 Frame_Shift_Ins p.V65Sfs*5 0.33 TCGA-F1-6177-01 1 20009857 20009857 G A TMCO4 Silent p.D527D 0.35 TCGA-F1-6177-01 1 200822549 200822549 A - CAMSAP2 Frame_Shift_Del p.K1252Nfs*19 0.38 TCGA-F1-6177-01 1 201012450 201012450 G T CACNA1S Silent p.A1669A 0.42 TCGA-F1-6177-01 1 201196181 201196181 G T IGFN1 Missense_Mutation p.S3653I 0.46 probably_damaging(0.998) TCGA-F1-6177-01 1 203054835 203054835 C T MYOG Silent p.A85A 0.34 TCGA-F1-6177-01 1 203185879 203185879 G T CHIT1 3'UTR 0.40 TCGA-F1-6177-01 1 204094988 204094988 C T SOX13 Missense_Mutation p.P532L 0.47 deleterious(0.03) benign(0.029) TCGA-F1-6177-01 1 205119923 205119923 C T DSTYK Splice_Site p.X785_splice 0.47 TCGA-F1-6177-01 1 205238117 205238117 G A TMCC2 Missense_Mutation p.G263S 0.36 tolerated(0.97) benign(0.006) TCGA-F1-6177-01 1 207818560 207818560 G A CR1L 5'UTR 0.25 TCGA-F1-6177-01 1 209968664 209968664 T C IRF6 Missense_Mutation p.Q160R 0.06 tolerated(0.18) benign(0.002) TCGA-F1-6177-01 1 210017023 210017023 G A DIEXF Missense_Mutation p.R670H 0.34 deleterious(0) probably_damaging(1) TCGA-F1-6177-01 1 212583792 212583792 T G TMEM206 Missense_Mutation p.R97S 0.38 tolerated_low_confidence(0.19) benign(0.034) TCGA-F1-6177-01 1 214816309 214816309 C T CENPF Missense_Mutation p.S1543L 0.40 benign(0.003) TCGA-F1-6177-01 1 216850658 216850658 C A ESRRG Nonsense_Mutation p.G83* 0.57 TCGA-F1-6177-01 1 217793655 217793655 C T GPATCH2 Silent p.P81P 0.41 TCGA-F1-6177-01 1 217793681 217793681 G A GPATCH2 Missense_Mutation p.R73W 0.43 deleterious(0) probably_damaging(1) TCGA-F1-6177-01 1 21889689 21889689 G - ALPL Frame_Shift_Del p.V130* 0.22 TCGA-F1-6177-01 1 21902358 21902358 C T ALPL Missense_Mutation p.A377V 0.34 deleterious(0) probably_damaging(1) TCGA-F1-6177-01 1 220208265 220208265 T C EPRS Silent p.E74E 0.33 TCGA-F1-6177-01 1 220324483 220324483 A - RAB3GAP2 3'UTR 0.76 TCGA-F1-6177-01 1 220970104 220970104 G A MARC1 Missense_Mutation p.R190K 0.45 deleterious(0.03) benign(0.443) TCGA-F1-6177-01 1 221053223 221053223 C A HLX Silent p.P8P 0.58 TCGA-F1-6177-01 1 22211642 22211642 G - HSPG2 Frame_Shift_Del p.Q407Rfs*3 0.36 TCGA-F1-6177-01 1 228464338 228464338 G A OBSCN Silent p.S2511S 0.31 TCGA-F1-6177-01 1 228525710 228525710 G A OBSCN Silent p.T6579T 0.29 TCGA-F1-6177-01 1 228559729 228559729 C - OBSCN Frame_Shift_Del p.P8042Lfs*44 0.14 TCGA-F1-6177-01 1 229568322 229568322 G A ACTA1 Silent p.Y145Y 0.50 TCGA-F1-6177-01 1 230903329 230903329 C T CAPN9 Silent p.I193I 0.48 TCGA-F1-6177-01 1 231488893 231488894 - T SPRTN Frame_Shift_Ins p.I422Yfs*11 0.44 TCGA-F1-6177-01 1 233372604 233372604 G A PCNXL2 Missense_Mutation p.S782L 0.37 tolerated(0.85) benign(0.07) TCGA-F1-6177-01 1 23650160 23650160 G A HNRNPR Silent p.A188A 0.44 TCGA-F1-6177-01 1 237057711 237057711 G A MTR Missense_Mutation p.A1087T 0.39 deleterious(0) possibly_damaging(0.574) TCGA-F1-6177-01 1 237806639 237806639 G A RYR2 Missense_Mutation p.G2412R 0.46 probably_damaging(1) TCGA-F1-6177-01 1 237947294 237947294 C T RYR2 Silent p.I4094I 0.39 TCGA-F1-6177-01 1 238051712 238051712 G T ZP4 Missense_Mutation p.L167I 0.33 tolerated(0.2) benign(0.12) TCGA-F1-6177-01 1 240072443 240072444 - A CHRM3 Frame_Shift_Ins p.R568Efs*26 0.36 TCGA-F1-6177-01 1 24120832 24120833 - C LYPLA2 Intron 0.27 TCGA-F1-6177-01 1 242035407 242035407 T C EXO1 Silent p.S447S 0.38 TCGA-F1-6177-01 1 243675724 243675724 A G AKT3 Missense_Mutation p.V419A 0.38 tolerated(0.67) benign(0.066) TCGA-F1-6177-01 1 245850605 245850605 G A KIF26B Silent p.P1440P 0.50 TCGA-F1-6177-01 1 246810568 246810568 A G CNST Silent p.A355A 0.53 TCGA-F1-6177-01 1 247464071 247464071 G A ZNF496 Missense_Mutation p.A505V 0.40 tolerated(0.4) benign(0) TCGA-F1-6177-01 1 25629929 25629930 - G RHD Frame_Shift_Ins p.A309Sfs*9 0.12 TCGA-F1-6177-01 1 26104704 26104704 G - MAN1C1 Frame_Shift_Del p.G457Afs*2 0.30 TCGA-F1-6177-01 1 26189653 26189653 G A PAQR7 Silent p.F226F 0.36 TCGA-F1-6177-01 1 26515144 26515144 C T CNKSR1 Missense_Mutation p.T549I 0.34 tolerated(0.07) possibly_damaging(0.721) TCGA-F1-6177-01 1 26526468 26526468 C T CATSPER4 Silent p.F302F 0.39 TCGA-F1-6177-01 1 26664036 26664036 C T AIM1L Missense_Mutation p.G339R 0.47 tolerated(0.19) probably_damaging(0.997) TCGA-F1-6177-01 1 26801751 26801751 T A HMGN2 3'UTR 0.33 TCGA-F1-6177-01 1 26801752 26801752 T A HMGN2 3'UTR 0.38 TCGA-F1-6177-01 1 27059207 27059207 C - ARID1A Frame_Shift_Del p.S617Qfs*2 0.29 TCGA-F1-6177-01 1 27097622 27097622 A - ARID1A Frame_Shift_Del p.K1072Nfs*21 0.39 TCGA-F1-6177-01 1 27121381 27121381 C T PIGV Missense_Mutation p.R286W 0.41 deleterious(0.01) probably_damaging(0.994) TCGA-F1-6177-01 1 27332907 27332907 C T FAM46B Missense_Mutation p.R269H 0.29 tolerated(0.13) benign(0.023) TCGA-F1-6177-01 1 28280888 28280888 C T SMPDL3B Missense_Mutation p.P181S 0.40 tolerated(0.42) benign(0.196) TCGA-F1-6177-01 1 28661359 28661359 G A MED18 Missense_Mutation p.V169M 0.30 deleterious(0) probably_damaging(0.975) TCGA-F1-6177-01 1 28858344 28858344 G A RCC1 Missense_Mutation p.G66S 0.36 deleterious(0.04) probably_damaging(0.94) TCGA-F1-6177-01 1 29069012 29069012 C T YTHDF2 Missense_Mutation p.T77M 0.48 deleterious(0) probably_damaging(0.996) TCGA-F1-6177-01 1 32222876 32222876 C T BAI2 5'UTR 0.46 TCGA-F1-6177-01 1 32635587 32635587 G A KPNA6 Missense_Mutation p.R450Q 0.36 deleterious(0.05) possibly_damaging(0.502) TCGA-F1-6177-01 1 32793260 32793260 A G HDAC1 Silent p.P206P 0.36 TCGA-F1-6177-01 1 32829430 32829430 G A TSSK3 Missense_Mutation p.G127D 0.46 tolerated(1) benign(0.002) TCGA-F1-6177-01 1 3328984 3328984 G A PRDM16 Silent p.T741T 0.47 TCGA-F1-6177-01 1 33612828 33612828 C T TRIM62 Missense_Mutation p.A460T 0.30 deleterious(0.02) probably_damaging(1) TCGA-F1-6177-01 1 33945006 33945006 G T ZSCAN20 Missense_Mutation p.K39N 0.40 tolerated(0.29) benign(0.004) TCGA-F1-6177-01 1 33999485 33999485 C T CSMD2 Missense_Mutation p.R3157H 0.44 tolerated(0.16) benign(0.021) TCGA-F1-6177-01 1 36553037 36553037 C T TEKT2 Intron 0.51 TCGA-F1-6177-01 1 3680038 3680038 G T CCDC27 Nonsense_Mutation p.G441* 0.41 TCGA-F1-6177-01 1 36929762 36929762 C A MRPS15 Missense_Mutation p.G39C 0.31 deleterious(0.01) possibly_damaging(0.885) TCGA-F1-6177-01 1 37307454 37307454 C A GRIK3 Missense_Mutation p.K471N 0.33 tolerated(0.15) benign(0.089) TCGA-F1-6177-01 1 37337814 37337814 G C GRIK3 Missense_Mutation p.T236S 0.44 tolerated(0.28) benign(0.001) TCGA-F1-6177-01 1 3800152 3800152 T - DFFB Frame_Shift_Del p.Y290Mfs*10 0.32 TCGA-F1-6177-01 1 38152051 38152051 C T C1orf109 Missense_Mutation p.A117T 0.30 tolerated(0.24) probably_damaging(0.918) TCGA-F1-6177-01 1 39798936 39798936 A - MACF1 Intron 0.24 TCGA-F1-6177-01 1 39812823 39812823 G A MACF1 Intron 0.28 TCGA-F1-6177-01 1 40434360 40434361 TG - MFSD2A Frame_Shift_Del p.M504Ifs*4 0.30 TCGA-F1-6177-01 1 42925658 42925658 A - PPCS 3'UTR 0.38 TCGA-F1-6177-01 1 43215907 43215907 G A LEPRE1 Missense_Mutation p.T557M 0.42 deleterious(0.03) possibly_damaging(0.888) TCGA-F1-6177-01 1 43828634 43828634 G A CDC20 Missense_Mutation p.R445Q 0.39 deleterious(0) probably_damaging(0.991) TCGA-F1-6177-01 1 43895417 43895417 C T SZT2 Missense_Mutation p.R1347C 0.48 deleterious(0.03) possibly_damaging(0.878) TCGA-F1-6177-01 1 44071951 44071951 G A PTPRF Missense_Mutation p.R1175Q 0.47 tolerated(0.05) possibly_damaging(0.482) TCGA-F1-6177-01 1 44303915 44303915 C T ST3GAL3 Silent p.Y147Y 0.38 TCGA-F1-6177-01 1 44415209 44415209 G A IPO13 Missense_Mutation p.D69N 0.44 tolerated(0.27) benign(0.044) TCGA-F1-6177-01 1 44685868 44685868 G A DMAP1 Missense_Mutation p.A411T 0.33 tolerated(0.66) benign(0.002) TCGA-F1-6177-01 1 45812673 45812673 G A TESK2 Missense_Mutation p.P257L 0.33 deleterious(0) probably_damaging(1) TCGA-F1-6177-01 1 4832433 4832433 G A AJAP1 Silent p.S337S 0.30 TCGA-F1-6177-01 1 52272560 52272560 G A NRD1 Silent p.F740F 0.18 TCGA-F1-6177-01 1 52285521 52285521 G A NRD1 Silent p.G482G 0.39 TCGA-F1-6177-01 1 52403065 52403065 C T RAB3B Missense_Mutation p.R83Q 0.38 deleterious(0) probably_damaging(0.978) TCGA-F1-6177-01 1 53074105 53074105 G A GPX7 3'UTR 0.44 TCGA-F1-6177-01 1 55081757 55081757 G - FAM151A Frame_Shift_Del p.T118Lfs*43 0.34 TCGA-F1-6177-01 1 57219586 57219586 T - C1orf168 Frame_Shift_Del p.M385* 0.20 TCGA-F1-6177-01 1 59042093 59042093 C T TACSTD2 Missense_Mutation p.V246M 0.30 deleterious(0) possibly_damaging(0.898) TCGA-F1-6177-01 1 59247705 59247706 - T JUN 3'UTR 0.39 TCGA-F1-6177-01 1 6191747 6191747 C T CHD5 Missense_Mutation p.R1069Q 0.43 deleterious(0) probably_damaging(0.999) TCGA-F1-6177-01 1 6257785 6257785 T - RPL22 Frame_Shift_Del p.K15Rfs*5 0.43 TCGA-F1-6177-01 1 65145313 65145313 G A CACHD1 Missense_Mutation p.A1043T 0.42 tolerated(0.7) benign(0.002) TCGA-F1-6177-01 1 6659390 6659390 C T KLHL21 Missense_Mutation p.G382R 0.35 deleterious(0) probably_damaging(0.999) TCGA-F1-6177-01 1 68564384 68564384 T G WLS Missense_Mutation p.E521D 0.14 tolerated_low_confidence(0.09) benign(0.061) TCGA-F1-6177-01 1 74954873 74954873 G C TNNI3K Missense_Mutation p.G809R 0.25 tolerated(0.46) benign(0.002) TCGA-F1-6177-01 1 7798362 7798362 G T CAMTA1 Missense_Mutation p.Q1334H 0.11 tolerated_low_confidence(0.1) probably_damaging(0.993) TCGA-F1-6177-01 1 7826653 7826654 - CA CAMTA1 3'UTR 0.41 TCGA-F1-6177-01 1 85547084 85547084 A - WDR63 Frame_Shift_Del p.I93Lfs*37 0.30 TCGA-F1-6177-01 1 8557484 8557484 T C RERE Missense_Mutation p.M329V 0.38 probably_damaging(0.918) TCGA-F1-6177-01 1 91843980 91843980 G A HFM1 Nonsense_Mutation p.R406* 0.45 TCGA-F1-6177-01 1 91989926 91989926 T C CDC7 Silent p.N553N 0.07 TCGA-F1-6177-01 1 94018104 94018104 T - FNBP1L 3'UTR 0.69 TCGA-F1-6177-01 1 94668131 94668131 T - ARHGAP29 Frame_Shift_Del p.K371Sfs*12 0.21 TCGA-F1-6177-01 1 95657235 95657235 C T TMEM56 Silent p.S201S 0.42 TCGA-F1-6177-01 1 9780197 9780197 C T PIK3CD Missense_Mutation p.T456M 0.47 tolerated(0.88) benign(0.002) TCGA-F1-6177-01 1 99470207 99470207 C T LPPR5 Silent p.A7A 0.38 TCGA-F1-6177-01 20 10582435 10582435 C T SLX4IP Missense_Mutation p.R125C 0.29 tolerated(0.23) benign(0.003) TCGA-F1-6177-01 20 1145691 1145691 C - PSMF1 Frame_Shift_Del p.P263Rfs*75 0.33 TCGA-F1-6177-01 20 1281343 1281343 G A SNPH Missense_Mutation p.R99Q 0.50 deleterious(0.01) benign(0.095) TCGA-F1-6177-01 20 1559072 1559072 G A RP4-576H24.4 Silent p.A114A 0.42 TCGA-F1-6177-01 20 16253772 16253772 G A KIF16B 3'UTR 0.41 TCGA-F1-6177-01 20 17601385 17601385 C T RRBP1 Missense_Mutation p.G728D 0.54 tolerated(0.8) probably_damaging(0.969) TCGA-F1-6177-01 20 17601390 17601390 C A RRBP1 Missense_Mutation p.K726N 0.56 deleterious(0) possibly_damaging(0.607) TCGA-F1-6177-01 20 17617252 17617252 G A RRBP1 Silent p.H336H 0.31 TCGA-F1-6177-01 20 19956393 19956394 - C RIN2 Frame_Shift_Ins p.I627Hfs*7 0.40 TCGA-F1-6177-01 20 20527373 20527373 C A RALGAPA2 Missense_Mutation p.R1087M 0.30 tolerated(0.07) benign(0.028) TCGA-F1-6177-01 20 21312221 21312221 C T XRN2 Missense_Mutation p.A200V 0.42 tolerated(1) benign(0.001) TCGA-F1-6177-01 20 21369921 21369921 G A XRN2 Missense_Mutation p.R933K 0.33 tolerated_low_confidence(0.39) benign(0.002) TCGA-F1-6177-01 20 24523741 24523741 G A SYNDIG1 Missense_Mutation p.G3D 0.49 deleterious_low_confidence(0.03) benign(0.415) TCGA-F1-6177-01 20 2640407 2640407 G A IDH3B Silent p.G316G 0.42 TCGA-F1-6177-01 20 279025 279025 C T ZCCHC3 Silent p.D266D 0.37 TCGA-F1-6177-01 20 2841159 2841159 C T VPS16 Missense_Mutation p.A145V 0.37 deleterious(0.02) possibly_damaging(0.794) TCGA-F1-6177-01 20 31021635 31021635 G A ASXL1 Missense_Mutation p.R545H 0.41 tolerated(0.05) probably_damaging(0.997) TCGA-F1-6177-01 20 31044122 31044122 G A C20orf112 Silent p.G62G 0.37 TCGA-F1-6177-01 20 3129815 3129815 G A FASTKD5 5'UTR 0.56 TCGA-F1-6177-01 20 3146682 3146682 C T LZTS3 Missense_Mutation p.G262S 0.33 tolerated(0.42) benign(0.003) TCGA-F1-6177-01 20 32232182 32232182 C T CBFA2T2 Silent p.S515S 0.36 TCGA-F1-6177-01 20 32298427 32298427 G A PXMP4 Silent p.H103H 0.54 TCGA-F1-6177-01 20 34022216 34022216 C T GDF5 Missense_Mutation p.A333T 0.49 tolerated(0.06) benign(0.001) TCGA-F1-6177-01 20 34526962 34526962 C T PHF20 Missense_Mutation p.R882C 0.36 deleterious(0) possibly_damaging(0.726) TCGA-F1-6177-01 20 35310930 35310930 G A NDRG3 Silent p.S145S 0.09 TCGA-F1-6177-01 20 3669866 3669866 C T SIGLEC1 Missense_Mutation p.R1669H 0.40 tolerated(0.66) benign(0.001) TCGA-F1-6177-01 20 39728804 39728804 C T TOP1 Missense_Mutation p.R362C 0.32 deleterious(0.02) possibly_damaging(0.816) TCGA-F1-6177-01 20 40034022 40034022 A G CHD6 Silent p.A2453A 0.40 TCGA-F1-6177-01 20 44527011 44527011 C T CTSA Silent p.A473A 0.33 TCGA-F1-6177-01 20 4705664 4705664 G A PRND Missense_Mutation p.R156Q 0.32 tolerated_low_confidence(0.3) possibly_damaging(0.857) TCGA-F1-6177-01 20 47630185 47630185 G A ARFGEF2 Missense_Mutation p.E1335K 0.37 deleterious(0.01) benign(0.241) TCGA-F1-6177-01 20 48156225 48156225 C T PTGIS Silent p.A185A 0.61 TCGA-F1-6177-01 20 48252783 48252783 A - B4GALT5 3'UTR 0.34 TCGA-F1-6177-01 20 50312634 50312634 T - ATP9A Frame_Shift_Del p.N182Tfs*71 0.33 TCGA-F1-6177-01 20 52835704 52835704 T - PFDN4 3'UTR 0.29 TCGA-F1-6177-01 20 54824818 54824818 C T MC3R Missense_Mutation p.R307C 0.44 deleterious(0.01) probably_damaging(0.999) TCGA-F1-6177-01 20 56190020 56190020 C T ZBP1 Missense_Mutation p.R142Q 0.36 deleterious(0.03) benign(0.076) TCGA-F1-6177-01 20 57392725 57392726 - G MIR296 RNA 0.30 TCGA-F1-6177-01 20 57415732 57415732 G - RP4-806M20.3 5'Flank 0.29 TCGA-F1-6177-01 20 57767064 57767064 G T ZNF831 Missense_Mutation p.K330N 0.58 deleterious(0) possibly_damaging(0.82) TCGA-F1-6177-01 20 5952655 5952655 C T MCM8 Missense_Mutation p.S409L 0.42 deleterious(0) benign(0.251) TCGA-F1-6177-01 20 6021949 6021949 G A LRRN4 Missense_Mutation p.R648C 0.50 deleterious(0) probably_damaging(0.97) TCGA-F1-6177-01 20 60887969 60887969 G A LAMA5 Missense_Mutation p.P3018L 0.32 benign(0.121) TCGA-F1-6177-01 20 60897443 60897443 G A LAMA5 Silent p.A2076A 0.42 TCGA-F1-6177-01 20 60966455 60966455 C T CABLES2 Silent p.T382T 0.38 TCGA-F1-6177-01 20 61511207 61511207 G - DIDO1 Frame_Shift_Del p.P2034Rfs*240 0.30 TCGA-F1-6177-01 20 61513747 61513747 C T DIDO1 Silent p.P1187P 0.36 TCGA-F1-6177-01 20 61595621 61595621 G A SLC17A9 Silent p.P288P 0.36 TCGA-F1-6177-01 20 62065156 62065156 C T KCNQ2 Intron 0.39 TCGA-F1-6177-01 21 22656690 22656690 C G NCAM2 Missense_Mutation p.Q103E 0.33 tolerated(0.34) benign(0.046) TCGA-F1-6177-01 21 28216622 28216622 C T ADAMTS1 Missense_Mutation p.E218K 0.54 tolerated(0.79) benign(0.011) TCGA-F1-6177-01 21 34861110 34861110 C T DNAJC28 Silent p.T197T 0.39 TCGA-F1-6177-01 21 37741742 37741742 A G MORC3 Silent p.A692A 0.37 TCGA-F1-6177-01 21 37833534 37833534 T C CLDN14 Missense_Mutation p.S154G 0.07 tolerated(0.25) benign(0.015) TCGA-F1-6177-01 21 37833611 37833611 G A CLDN14 Missense_Mutation p.A128V 0.10 deleterious(0) probably_damaging(0.94) TCGA-F1-6177-01 21 39772564 39772564 C - ERG Frame_Shift_Del p.G233Vfs*65 0.36 TCGA-F1-6177-01 21 40186201 40186201 C T ETS2 Silent p.S63S 0.45 TCGA-F1-6177-01 21 40570895 40570896 - T BRWD1 Frame_Shift_Ins p.T1816Nfs*6 0.39 TCGA-F1-6177-01 21 43231123 43231123 T C PRDM15 Missense_Mutation p.K1187R 0.44 deleterious(0.04) possibly_damaging(0.871) TCGA-F1-6177-01 21 43411609 43411609 C T ZBTB21 Missense_Mutation p.E866K 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-F1-6177-01 21 45877042 45877042 G A LRRC3 Missense_Mutation p.C172Y 0.33 deleterious(0) probably_damaging(1) TCGA-F1-6177-01 21 46047173 46047173 C - KRTAP10-9 Frame_Shift_Del p.C31Afs*13 0.28 TCGA-F1-6177-01 21 46117692 46117692 C T KRTAP10-12 Silent p.S192S 0.42 TCGA-F1-6177-01 21 46233931 46233931 G A SUMO3 Missense_Mutation p.T37M 0.36 deleterious(0.03) possibly_damaging(0.796) TCGA-F1-6177-01 21 46330685 46330685 G A ITGB2 Missense_Mutation p.R5C 0.43 deleterious(0) unknown(0) TCGA-F1-6177-01 21 47552299 47552299 C T COL6A2 Missense_Mutation p.R965C 0.41 deleterious(0) probably_damaging(0.97) TCGA-F1-6177-01 21 47663638 47663638 T C MCM3AP Splice_Site p.X1680_splice 0.62 TCGA-F1-6177-01 21 47686064 47686064 G A MCM3AP Missense_Mutation p.R936W 0.37 deleterious(0) probably_damaging(0.999) TCGA-F1-6177-01 21 47841990 47841990 G A PCNT Silent p.P2377P 0.24 TCGA-F1-6177-01 21 47924285 47924286 - C DIP2A Frame_Shift_Ins p.P225Sfs*2 0.35 TCGA-F1-6177-01 21 48083456 48083456 C G PRMT2 Missense_Mutation p.T420R 0.40 tolerated(0.28) benign(0.265) TCGA-F1-6177-01 22 16267071 16267071 C T POTEH Missense_Mutation p.G460R 0.09 tolerated(0.25) benign(0.066) TCGA-F1-6177-01 22 18379717 18379717 G A MICAL3 Nonsense_Mutation p.R327* 0.40 TCGA-F1-6177-01 22 19118894 19118894 G A TSSK2 5'UTR 0.54 TCGA-F1-6177-01 22 19420868 19420868 T C MRPL40 Missense_Mutation p.M45T 0.46 tolerated(0.12) benign(0.007) TCGA-F1-6177-01 22 20130311 20130311 C T ZDHHC8 Silent p.D386D 0.30 TCGA-F1-6177-01 22 21065106 21065106 G A PI4KA Silent p.L1988L 0.31 TCGA-F1-6177-01 22 21224675 21224675 C T SNAP29 Silent p.D96D 0.04 TCGA-F1-6177-01 22 21385285 21385285 C T SLC7A4 Missense_Mutation p.A273T 0.30 tolerated(0.35) benign(0.202) TCGA-F1-6177-01 22 22160224 22160224 C T MAPK1 Missense_Mutation p.G136E 0.39 deleterious(0) probably_damaging(0.995) TCGA-F1-6177-01 22 23742397 23742397 G A ZDHHC8P1 RNA 0.48 TCGA-F1-6177-01 22 24034789 24034789 G A RGL4 Intron 0.50 TCGA-F1-6177-01 22 24145518 24145518 C T SMARCB1 Silent p.N179N 0.43 TCGA-F1-6177-01 22 26829562 26829563 - C ASPHD2 5'UTR 0.37 TCGA-F1-6177-01 22 26892177 26892177 G A TFIP11 Missense_Mutation p.R571C 0.39 deleterious(0.03) possibly_damaging(0.608) TCGA-F1-6177-01 22 28193255 28193255 C - MN1 Frame_Shift_Del p.E1093Nfs*85 0.38 TCGA-F1-6177-01 22 29668385 29668385 G A EWSR1 Missense_Mutation p.A23T 0.54 tolerated_low_confidence(0.13) benign(0.312) TCGA-F1-6177-01 22 31536376 31536376 G T PLA2G3 5'UTR 0.42 TCGA-F1-6177-01 22 32015765 32015765 C T PISD Missense_Mutation p.V321M 0.38 tolerated(0.14) benign(0.344) TCGA-F1-6177-01 22 32462978 32462978 C T SLC5A1 Silent p.A88A 0.42 TCGA-F1-6177-01 22 36205885 36205885 G A RBFOX2 Missense_Mutation p.T135M 0.41 possibly_damaging(0.785) TCGA-F1-6177-01 22 37533717 37533717 G A IL2RB Silent p.N149N 0.08 TCGA-F1-6177-01 22 37912253 37912253 C T CARD10 Silent p.R142R 0.38 TCGA-F1-6177-01 22 38484757 38484757 G A BAIAP2L2 Silent p.S372S 0.30 TCGA-F1-6177-01 22 39135931 39135931 C T SUN2 Silent p.P479P 0.48 TCGA-F1-6177-01 22 39817833 39817833 G A TAB1 Missense_Mutation p.A260T 0.50 tolerated(0.2) benign(0.007) TCGA-F1-6177-01 22 40574036 40574037 - A TNRC6B 5'UTR 0.35 TCGA-F1-6177-01 22 41077720 41077720 C T MCHR1 Missense_Mutation p.R353C 0.39 deleterious(0.03) possibly_damaging(0.894) TCGA-F1-6177-01 22 41258071 41258071 G C DNAJB7 5'UTR 0.41 TCGA-F1-6177-01 22 42221850 42221850 G - CCDC134 3'UTR 0.33 TCGA-F1-6177-01 22 42523877 42523877 G T CYP2D6 Missense_Mutation p.L318I 0.45 deleterious(0.05) possibly_damaging(0.737) TCGA-F1-6177-01 22 45595893 45595893 G - KIAA0930 Frame_Shift_Del p.T298Pfs*27 0.25 TCGA-F1-6177-01 22 45719294 45719294 C T FAM118A Missense_Mutation p.R96W 0.39 deleterious(0) probably_damaging(0.998) TCGA-F1-6177-01 22 45996196 45996196 G A FBLN1 Missense_Mutation p.R661H 0.45 tolerated(0.2) possibly_damaging(0.84) TCGA-F1-6177-01 22 46930415 46930415 C T CELSR1 Missense_Mutation p.A885T 0.48 deleterious(0.02) probably_damaging(0.961) TCGA-F1-6177-01 22 46931760 46931760 C T CELSR1 Silent p.P436P 0.40 TCGA-F1-6177-01 22 50169305 50169306 - C BRD1 Frame_Shift_Ins p.E976Gfs*8 0.34 TCGA-F1-6177-01 22 50470410 50470410 C T TTLL8 Missense_Mutation p.R487H 0.36 tolerated(0.07) benign(0.432) TCGA-F1-6177-01 2 100623849 100623849 A - AFF3 Frame_Shift_Del p.L108* 0.39 TCGA-F1-6177-01 2 105858894 105858894 C T GPR45 Silent p.R193R 0.47 TCGA-F1-6177-01 2 106710415 106710415 A - UXS1 3'UTR 0.42 TCGA-F1-6177-01 2 108489258 108489258 A - RGPD4 Frame_Shift_Del p.K1601Nfs*69 0.33 TCGA-F1-6177-01 2 108499318 108499318 C T RGPD4 Missense_Mutation p.A1752V 0.35 deleterious_low_confidence(0) possibly_damaging(0.499) TCGA-F1-6177-01 2 10863007 10863007 G T ATP6V1C2 Missense_Mutation p.G11V 0.34 deleterious(0.03) benign(0.341) TCGA-F1-6177-01 2 109382397 109382397 G A RANBP2 Missense_Mutation p.C1801Y 0.05 deleterious_low_confidence(0.03) possibly_damaging(0.824) TCGA-F1-6177-01 2 11356319 11356319 G A ROCK2 Missense_Mutation p.R476C 0.37 deleterious(0) probably_damaging(0.935) TCGA-F1-6177-01 2 113943688 113943688 C T PSD4 Missense_Mutation p.T495M 0.49 deleterious_low_confidence(0.02) possibly_damaging(0.654) TCGA-F1-6177-01 2 114002038 114002038 T C PAX8 Missense_Mutation p.N119D 0.38 deleterious(0.01) benign(0.173) TCGA-F1-6177-01 2 116534869 116534869 A - DPP10 Frame_Shift_Del p.I442Ffs*4 0.34 TCGA-F1-6177-01 2 11777862 11777862 G A GREB1 Silent p.A1789A 0.40 TCGA-F1-6177-01 2 120020712 120020712 G A STEAP3 Missense_Mutation p.S432N 0.47 tolerated(0.1) benign(0.014) TCGA-F1-6177-01 2 121104166 121104166 C T INHBB Silent p.A134A 0.59 TCGA-F1-6177-01 2 121107004 121107004 G A INHBB Missense_Mutation p.V260M 0.51 deleterious(0.01) probably_damaging(1) TCGA-F1-6177-01 2 121742146 121742146 G A GLI2 Missense_Mutation p.V595I 0.37 tolerated(0.2) probably_damaging(0.987) TCGA-F1-6177-01 2 128477624 128477624 G - WDR33 Frame_Shift_Del p.Q659Rfs*59 0.32 TCGA-F1-6177-01 2 130738154 130738154 A G RAB6C Missense_Mutation p.R156G 0.05 deleterious_low_confidence(0) benign(0.007) TCGA-F1-6177-01 2 130899770 130899770 C T CCDC74B Silent p.V160V 0.16 TCGA-F1-6177-01 2 130899886 130899886 C T CCDC74B Missense_Mutation p.G122R 0.26 tolerated(0.61) benign(0.011) TCGA-F1-6177-01 2 131520215 131520215 G A AMER3 Silent p.P190P 0.45 TCGA-F1-6177-01 2 131803619 131803619 C T ARHGEF4 Missense_Mutation p.R644W 0.46 deleterious(0.01) probably_damaging(0.952) TCGA-F1-6177-01 2 132259053 132259053 G - AC093838.4 RNA 0.26 TCGA-F1-6177-01 2 132288220 132288220 G A CCDC74A Missense_Mutation p.G122R 0.20 tolerated(0.54) benign(0.33) TCGA-F1-6177-01 2 132288336 132288336 G A CCDC74A Silent p.V160V 0.22 TCGA-F1-6177-01 2 136561666 136561666 C A LCT Silent p.T1499T 0.39 TCGA-F1-6177-01 2 141208157 141208157 G A LRP1B Missense_Mutation p.S3346F 0.11 possibly_damaging(0.788) TCGA-F1-6177-01 2 148683686 148683686 A - ACVR2A Frame_Shift_Del p.K437Rfs*5 0.10 TCGA-F1-6177-01 2 152980308 152980308 C T STAM2 Missense_Mutation p.A441T 0.45 tolerated(1) benign(0.001) TCGA-F1-6177-01 2 153526848 153526849 - T PRPF40A Frame_Shift_Ins p.N509Kfs*4 0.36 TCGA-F1-6177-01 2 154334995 154334995 A G RPRM Missense_Mutation p.C29R 0.37 deleterious(0) benign(0.039) TCGA-F1-6177-01 2 15534361 15534361 T C NBAS Missense_Mutation p.T1083A 0.35 tolerated(0.54) benign(0.004) TCGA-F1-6177-01 2 15676570 15676570 G A NBAS Nonsense_Mutation p.R207* 0.34 TCGA-F1-6177-01 2 160053294 160053294 G A TANC1 Missense_Mutation p.G1052D 0.33 deleterious(0.02) probably_damaging(1) TCGA-F1-6177-01 2 16082314 16082314 C - MYCN Frame_Shift_Del p.P45Rfs*86 0.27 TCGA-F1-6177-01 2 163134715 163134716 - T IFIH1 Frame_Shift_Ins p.A589Sfs*21 0.43 TCGA-F1-6177-01 2 163695120 163695120 C T KCNH7 5'UTR 0.30 TCGA-F1-6177-01 2 1652681 1652681 C T PXDN Silent p.T957T 0.53 TCGA-F1-6177-01 2 170062048 170062048 C T LRP2 Missense_Mutation p.M2552I 0.44 benign(0.181) TCGA-F1-6177-01 2 170493803 170493803 G A PPIG Missense_Mutation p.E679K 0.34 tolerated_low_confidence(0.24) unknown(0) TCGA-F1-6177-01 2 173782536 173782536 C T RAPGEF4 Nonsense_Mutation p.R151* 0.40 TCGA-F1-6177-01 2 176948108 176948108 C T EVX2 Missense_Mutation p.A133T 0.27 tolerated(0.22) benign(0.007) TCGA-F1-6177-01 2 179393909 179393909 T C TTN Silent p.Q35523Q 0.26 TCGA-F1-6177-01 2 179437710 179437710 C T TTN Silent p.S24383S 0.48 TCGA-F1-6177-01 2 179585746 179585746 G A TTN Missense_Mutation p.T7667M 0.43 TCGA-F1-6177-01 2 179590725 179590725 T - TTN Frame_Shift_Del p.N6775Mfs*74 0.23 TCGA-F1-6177-01 2 179647124 179647124 A G TTN Silent p.T1065T 0.40 TCGA-F1-6177-01 2 179736188 179736188 C T CCDC141 Missense_Mutation p.R724Q 0.49 tolerated(1) benign(0.004) TCGA-F1-6177-01 2 183790471 183790471 A G NCKAP1 Missense_Mutation p.Y1122H 0.39 deleterious(0) probably_damaging(0.995) TCGA-F1-6177-01 2 189599261 189599261 A - DIRC1 3'UTR 0.38 TCGA-F1-6177-01 2 19553155 19553155 C - OSR1 Frame_Shift_Del p.E138Rfs*16 0.28 TCGA-F1-6177-01 2 201363678 201363678 C T KCTD18 Missense_Mutation p.D168N 0.06 deleterious(0.02) possibly_damaging(0.907) TCGA-F1-6177-01 2 202254126 202254126 G A TRAK2 Missense_Mutation p.R432C 0.37 deleterious(0.04) benign(0.032) TCGA-F1-6177-01 2 202609120 202609120 T - ALS2 Frame_Shift_Del p.D678Ifs*4 0.22 TCGA-F1-6177-01 2 203165008 203165009 - A NOP58 Frame_Shift_Ins p.R443Tfs*8 0.34 TCGA-F1-6177-01 2 206659845 206659845 T - NRP2 3'UTR 0.41 TCGA-F1-6177-01 2 207174428 207174428 A - ZDBF2 Frame_Shift_Del p.K1728Nfs*5 0.41 TCGA-F1-6177-01 2 210559607 210559607 C T MAP2 Nonsense_Mutation p.R905* 0.33 TCGA-F1-6177-01 2 216214278 216214278 C T ATIC Missense_Mutation p.A560V 0.30 tolerated(0.21) benign(0.026) TCGA-F1-6177-01 2 219028909 219028909 C T CXCR1 Silent p.S342S 0.26 TCGA-F1-6177-01 2 219508172 219508172 G A ZNF142 Nonsense_Mutation p.Q1023* 0.39 TCGA-F1-6177-01 2 220073405 220073405 G A ZFAND2B Intron 0.40 TCGA-F1-6177-01 2 220367131 220367131 G A GMPPA Missense_Mutation p.G153S 0.34 deleterious(0) probably_damaging(1) TCGA-F1-6177-01 2 220502391 220502391 G A SLC4A3 Missense_Mutation p.S902N 0.40 tolerated(0.41) benign(0.234) TCGA-F1-6177-01 2 231191958 231191958 C T SP140L 5'UTR 0.50 TCGA-F1-6177-01 2 231775182 231775182 A G GPR55 Missense_Mutation p.Y166H 0.39 deleterious(0.05) possibly_damaging(0.796) TCGA-F1-6177-01 2 233721639 233721639 C T GIGYF2 3'UTR 0.42 TCGA-F1-6177-01 2 233898912 233898912 G T NEU2 Silent p.G96G 0.46 TCGA-F1-6177-01 2 239079047 239079047 A - ILKAP 3'UTR 0.33 TCGA-F1-6177-01 2 241492466 241492466 A G ANKMY1 Silent p.H26H 0.61 TCGA-F1-6177-01 2 24509095 24509096 - A ITSN2 Frame_Shift_Ins p.N617* 0.33 TCGA-F1-6177-01 2 25047345 25047345 G A ADCY3 Missense_Mutation p.R880C 0.40 deleterious(0) possibly_damaging(0.676) TCGA-F1-6177-01 2 25523110 25523110 G A DNMT3A Silent p.D25D 0.37 TCGA-F1-6177-01 2 27306221 27306221 C T EMILIN1 Silent p.R594R 0.44 TCGA-F1-6177-01 2 27700448 27700448 T C IFT172 Missense_Mutation p.K400R 0.51 tolerated(0.29) benign(0.046) TCGA-F1-6177-01 2 27850362 27850362 C T CCDC121 Missense_Mutation p.R264Q 0.36 tolerated(1) benign(0.001) TCGA-F1-6177-01 2 27852006 27852006 G T GPN1 Missense_Mutation p.M41I 0.22 deleterious(0) probably_damaging(0.988) TCGA-F1-6177-01 2 28739709 28739709 T C PLB1 Silent p.S30S 0.38 TCGA-F1-6177-01 2 31588866 31588866 G A XDH Missense_Mutation p.T811M 0.39 tolerated(0.06) possibly_damaging(0.896) TCGA-F1-6177-01 2 32740783 32740783 G A BIRC6 Silent p.A3765A 0.54 TCGA-F1-6177-01 2 38800365 38800365 C T HNRNPLL Missense_Mutation p.G355E 0.29 deleterious(0) probably_damaging(1) TCGA-F1-6177-01 2 40366803 40366803 G A SLC8A1 Silent p.D761D 0.41 TCGA-F1-6177-01 2 42578275 42578275 A - COX7A2L 3'UTR 0.75 TCGA-F1-6177-01 2 47220638 47220638 G A TTC7A Missense_Mutation p.E272K 0.40 deleterious(0) probably_damaging(0.976) TCGA-F1-6177-01 2 54853348 54853348 A G SPTBN1 Missense_Mutation p.M541V 0.55 tolerated(0.29) benign(0.034) TCGA-F1-6177-01 2 62733266 62733266 C T TMEM17 5'UTR 0.39 TCGA-F1-6177-01 2 69709832 69709832 G A AAK1 Intron 0.23 TCGA-F1-6177-01 2 70033620 70033620 G T ANXA4 Missense_Mutation p.R99M 0.11 deleterious(0.01) benign(0.284) TCGA-F1-6177-01 2 71337212 71337212 T - MCEE Frame_Shift_Del p.K140Rfs*6 0.45 TCGA-F1-6177-01 2 73650099 73650099 T C ALMS1 Missense_Mutation p.L254P 0.39 probably_damaging(0.999) TCGA-F1-6177-01 2 74329152 74329152 G - TET3 Frame_Shift_Del p.G1613Afs*106 0.32 TCGA-F1-6177-01 2 74460640 74460640 C T SLC4A5 Silent p.P828P 0.42 TCGA-F1-6177-01 2 77748892 77748892 G A LRRTM4 Intron 0.06 TCGA-F1-6177-01 2 85536360 85536360 G T TCF7L1 Missense_Mutation p.Q514H 0.36 tolerated_low_confidence(1) benign(0) TCGA-F1-6177-01 2 88876178 88876178 C T EIF2AK3 Missense_Mutation p.A644T 0.42 deleterious(0) probably_damaging(1) TCGA-F1-6177-01 2 89246881 89246881 T A IGKV1-5 Missense_Mutation p.I97F 0.46 deleterious(0.01) benign(0.409) TCGA-F1-6177-01 2 96809731 96809731 G A DUSP2 Missense_Mutation p.A259V 0.46 deleterious(0.01) probably_damaging(0.999) TCGA-F1-6177-01 2 96945252 96945252 G A SNRNP200 Silent p.H1690H 0.42 TCGA-F1-6177-01 2 98928382 98928382 A G VWA3B Missense_Mutation p.K1208E 0.35 deleterious_low_confidence(0.01) probably_damaging(0.956) TCGA-F1-6177-01 2 98994192 98994192 G A CNGA3 Silent p.P48P 0.31 TCGA-F1-6177-01 2 99870726 99870726 C T LYG2 5'UTR 0.40 TCGA-F1-6177-01 2 99977878 99977878 A - EIF5B Frame_Shift_Del p.I174Lfs*7 0.11 TCGA-F1-6177-01 3 101023021 101023021 T C IMPG2 Missense_Mutation p.E157G 0.38 deleterious(0) benign(0.048) TCGA-F1-6177-01 3 101070484 101070484 T - SENP7 Frame_Shift_Del p.K545Nfs*11 0.29 TCGA-F1-6177-01 3 10357042 10357042 G A SEC13 Missense_Mutation p.R43C 0.53 deleterious(0.03) benign(0.216) TCGA-F1-6177-01 3 108541651 108541651 T - TRAT1 5'UTR 0.27 TCGA-F1-6177-01 3 10861469 10861469 T - SLC6A11 Frame_Shift_Del p.Y157Tfs*2 0.32 TCGA-F1-6177-01 3 112357095 112357095 T - CCDC80 Frame_Shift_Del p.K553Rfs*2 0.42 TCGA-F1-6177-01 3 112546413 112546413 G A CD200R1L Silent p.C77C 0.42 TCGA-F1-6177-01 3 113184616 113184616 G A SPICE1 Missense_Mutation p.R391C 0.43 tolerated(0.06) probably_damaging(0.975) TCGA-F1-6177-01 3 113374252 113374252 T C KIAA2018 Missense_Mutation p.T2093A 0.44 probably_damaging(0.996) TCGA-F1-6177-01 3 114058003 114058003 G - ZBTB20 Frame_Shift_Del p.P692Lfs*43 0.26 TCGA-F1-6177-01 3 114069778 114069778 T C ZBTB20 Missense_Mutation p.I383V 0.36 tolerated(0.23) possibly_damaging(0.456) TCGA-F1-6177-01 3 118866168 118866168 G T C3orf30 Missense_Mutation p.G378C 0.42 deleterious(0.01) probably_damaging(0.917) TCGA-F1-6177-01 3 118948948 118948948 T - B4GALT4 5'UTR 0.30 TCGA-F1-6177-01 3 119120866 119120866 G A ARHGAP31 Missense_Mutation p.A423T 0.40 tolerated(0.36) benign(0.004) TCGA-F1-6177-01 3 119434407 119434407 A G MAATS1 Splice_Site p.X167_splice 0.34 TCGA-F1-6177-01 3 123457859 123457860 - C MYLK Frame_Shift_Ins p.E158Gfs*54 0.43 TCGA-F1-6177-01 3 124174076 124174076 A - KALRN Frame_Shift_Del p.G1202Afs*8 0.29 TCGA-F1-6177-01 3 124457070 124457071 - A UMPS Frame_Shift_Ins p.Q325Afs*3 0.26 TCGA-F1-6177-01 3 125702239 125702239 A G ROPN1B 3'UTR 0.38 TCGA-F1-6177-01 3 126236457 126236457 G T UROC1 Missense_Mutation p.L36I 0.26 deleterious(0) probably_damaging(0.952) TCGA-F1-6177-01 3 126733584 126733584 C A PLXNA1 Silent p.S929S 0.25 TCGA-F1-6177-01 3 128060188 128060188 G A EEFSEC Missense_Mutation p.R300H 0.53 deleterious(0) probably_damaging(1) TCGA-F1-6177-01 3 128516847 128516848 - CC RAB7A Frame_Shift_Ins p.T40Pfs*3 0.26 TCGA-F1-6177-01 3 12949857 12949857 G A IQSEC1 Missense_Mutation p.S930L 0.26 deleterious(0) probably_damaging(0.921) TCGA-F1-6177-01 3 130743433 130743433 G A ASTE1 Missense_Mutation p.R240C 0.40 tolerated(0.14) benign(0.01) TCGA-F1-6177-01 3 130881343 130881343 G T NEK11 Missense_Mutation p.A352S 0.43 deleterious(0.03) benign(0.038) TCGA-F1-6177-01 3 132424628 132424630 CTT - NPHP3 In_Frame_Del p.E435del 0.37 TCGA-F1-6177-01 3 134322278 134322278 G A KY 3'UTR 0.47 TCGA-F1-6177-01 3 136664467 136664467 C T NCK1 Missense_Mutation p.A90V 0.07 tolerated(0.48) benign(0.342) TCGA-F1-6177-01 3 1371501 1371501 A - CNTN6 Frame_Shift_Del p.K418Sfs*63 0.71 TCGA-F1-6177-01 3 140785469 140785469 G A SPSB4 Missense_Mutation p.D175N 0.28 deleterious(0) possibly_damaging(0.883) TCGA-F1-6177-01 3 142151518 142151518 C T XRN1 Missense_Mutation p.R98H 0.37 deleterious(0) probably_damaging(1) TCGA-F1-6177-01 3 146233845 146233845 G A PLSCR1 Missense_Mutation p.S315L 0.50 tolerated(0.38) benign(0.001) TCGA-F1-6177-01 3 147128311 147128311 G A ZIC1 Missense_Mutation p.A138T 0.44 tolerated(0.27) benign(0.004) TCGA-F1-6177-01 3 14861889 14861889 C T FGD5 Silent p.P437P 0.45 TCGA-F1-6177-01 3 14905734 14905734 C T FGD5 Silent p.D875D 0.36 TCGA-F1-6177-01 3 149684096 149684097 - G PFN2 3'UTR 0.29 TCGA-F1-6177-01 3 151545391 151545391 A G AADAC Missense_Mutation p.K211E 0.38 deleterious(0.01) probably_damaging(0.938) TCGA-F1-6177-01 3 15455535 15455535 A - METTL6 Frame_Shift_Del p.F222Lfs*19 0.32 TCGA-F1-6177-01 3 155481462 155481463 - A C3orf33 Frame_Shift_Ins p.L200Ffs*17 0.29 TCGA-F1-6177-01 3 158383230 158383230 A G GFM1 Silent p.G495G 0.06 TCGA-F1-6177-01 3 158541915 158541915 T C MFSD1 Missense_Mutation p.M442T 0.08 tolerated(0.08) benign(0.02) TCGA-F1-6177-01 3 167248986 167248986 C T WDR49 Missense_Mutation p.R360H 0.43 tolerated(0.56) benign(0.001) TCGA-F1-6177-01 3 167277927 167277927 G A WDR49 Silent p.N192N 0.38 TCGA-F1-6177-01 3 168833604 168833605 - T MECOM Frame_Shift_Ins p.V563Sfs*27 0.45 TCGA-F1-6177-01 3 169998127 169998128 - A PRKCI Frame_Shift_Ins p.T276Nfs*16 0.33 TCGA-F1-6177-01 3 170624844 170624844 T - EIF5A2 Frame_Shift_Del p.K68Nfs*24 0.26 TCGA-F1-6177-01 3 171427481 171427481 G A PLD1 Silent p.C310C 0.40 TCGA-F1-6177-01 3 172835263 172835263 C T SPATA16 Missense_Mutation p.E87K 0.41 deleterious(0.02) possibly_damaging(0.486) TCGA-F1-6177-01 3 178916891 178916891 G A PIK3CA Missense_Mutation p.R93Q 0.43 deleterious(0.01) probably_damaging(0.978) TCGA-F1-6177-01 3 178936096 178936096 G T PIK3CA Missense_Mutation p.Q546H 0.47 tolerated(0.06) possibly_damaging(0.679) TCGA-F1-6177-01 3 184020259 184020259 C T PSMD2 Missense_Mutation p.A269V 0.45 deleterious(0) possibly_damaging(0.839) TCGA-F1-6177-01 3 184298851 184298851 G A EPHB3 Missense_Mutation p.R877Q 0.53 tolerated(0.09) benign(0.426) TCGA-F1-6177-01 3 186302256 186302256 C T DNAJB11 Missense_Mutation p.A297V 0.38 deleterious(0.03) possibly_damaging(0.667) TCGA-F1-6177-01 3 196554152 196554152 G A PAK2 Missense_Mutation p.R479Q 0.48 tolerated(0.37) benign(0.028) TCGA-F1-6177-01 3 196846372 196846372 T C DLG1 Missense_Mutation p.S432G 0.40 tolerated(0.07) benign(0.009) TCGA-F1-6177-01 3 197427748 197427748 G - KIAA0226 Frame_Shift_Del p.R333Efs*37 0.27 TCGA-F1-6177-01 3 197670853 197670853 G A IQCG Silent p.G26G 0.40 TCGA-F1-6177-01 3 31674521 31674521 C T STT3B Missense_Mutation p.T761I 0.42 deleterious(0) probably_damaging(0.999) TCGA-F1-6177-01 3 32859730 32859730 C G TRIM71 Missense_Mutation p.A53G 0.67 tolerated_low_confidence(0.06) unknown(0) TCGA-F1-6177-01 3 32932608 32932608 G A TRIM71 Missense_Mutation p.A638T 0.37 tolerated(1) benign(0.001) TCGA-F1-6177-01 3 33602361 33602361 T - CLASP2 Frame_Shift_Del p.M965Wfs*33 0.34 TCGA-F1-6177-01 3 39453212 39453212 C T RPSA Missense_Mutation p.R191C 0.37 tolerated(0.19) benign(0.003) TCGA-F1-6177-01 3 40251426 40251426 C T MYRIP Missense_Mutation p.R583W 0.33 deleterious(0.01) possibly_damaging(0.72) TCGA-F1-6177-01 3 41860994 41861014 TCTTCCTAAAATGAAGTGGGA CTTCCTAAAATGAAGTGGG ULK4 Splice_Site p.X589_splice 0.38 TCGA-F1-6177-01 3 42679036 42679036 C - NKTR Frame_Shift_Del p.P616Lfs*21 0.32 TCGA-F1-6177-01 3 43121172 43121172 G T POMGNT2 3'UTR 0.30 TCGA-F1-6177-01 3 45132849 45132849 G A CDCP1 Silent p.R603R 0.31 TCGA-F1-6177-01 3 46063062 46063062 G A XCR1 Silent p.H126H 0.48 TCGA-F1-6177-01 3 46786212 46786212 G A PRSS45 Missense_Mutation p.R12W 0.38 deleterious(0) probably_damaging(0.983) TCGA-F1-6177-01 3 47103754 47103755 - TC SETD2 Frame_Shift_Ins p.D2064Efs*84 0.37 TCGA-F1-6177-01 3 47677558 47677559 - T SMARCC1 Frame_Shift_Ins p.N815Kfs*2 0.34 TCGA-F1-6177-01 3 47779562 47779562 C T SMARCC1 Missense_Mutation p.R147H 0.24 deleterious(0) possibly_damaging(0.901) TCGA-F1-6177-01 3 4829715 4829715 C T ITPR1 Nonsense_Mutation p.R2219* 0.24 TCGA-F1-6177-01 3 48459679 48459679 C T PLXNB1 Missense_Mutation p.R1048H 0.44 tolerated(0.28) benign(0) TCGA-F1-6177-01 3 48686617 48686617 C A CELSR3 Missense_Mutation p.Q2168H 0.42 deleterious(0.04) benign(0.003) TCGA-F1-6177-01 3 48699637 48699637 C T CELSR3 Missense_Mutation p.R144Q 0.45 tolerated_low_confidence(0.23) benign(0.002) TCGA-F1-6177-01 3 48897000 48897000 G A SLC25A20 Missense_Mutation p.P199L 0.04 deleterious(0.03) benign(0.032) TCGA-F1-6177-01 3 49698234 49698234 C T BSN Missense_Mutation p.R2986C 0.39 unknown(0) TCGA-F1-6177-01 3 49785304 49785304 C T IP6K1 Missense_Mutation p.R57H 0.46 tolerated(0.09) probably_damaging(0.997) TCGA-F1-6177-01 3 50095229 50095230 - A RBM6 Frame_Shift_Ins p.Q590Tfs*10 0.35 TCGA-F1-6177-01 3 51308421 51308421 G A DOCK3 Missense_Mutation p.R844H 0.38 tolerated(0.13) benign(0.007) TCGA-F1-6177-01 3 51417604 51417604 C - DOCK3 Frame_Shift_Del p.P1852Qfs*45 0.30 TCGA-F1-6177-01 3 51929286 51929286 G A IQCF1 Missense_Mutation p.R80W 0.38 deleterious(0.01) probably_damaging(1) TCGA-F1-6177-01 3 52233439 52233439 C A ALAS1 Missense_Mutation p.T61N 0.36 tolerated(0.2) benign(0.022) TCGA-F1-6177-01 3 53126488 53126488 C T RFT1 Missense_Mutation p.R452H 0.42 tolerated(0.26) benign(0.015) TCGA-F1-6177-01 3 53856562 53856562 G A CHDH Missense_Mutation p.R271C 0.32 deleterious(0) probably_damaging(0.954) TCGA-F1-6177-01 3 54914835 54914835 G A CACNA2D3 Silent p.A619A 0.42 TCGA-F1-6177-01 3 56651196 56651197 GA - CCDC66 Frame_Shift_Del p.R635Gfs*9 0.29 TCGA-F1-6177-01 3 56771219 56771219 C T ARHGEF3 Silent p.R377R 0.33 TCGA-F1-6177-01 3 63938114 63938114 G A ATXN7 Missense_Mutation p.D152N 0.42 tolerated(0.13) benign(0.021) TCGA-F1-6177-01 3 65342797 65342797 G A MAGI1 Silent p.S1215S 0.10 TCGA-F1-6177-01 3 77614178 77614178 C T ROBO2 Missense_Mutation p.R602W 0.36 deleterious(0.03) probably_damaging(0.92) TCGA-F1-6177-01 3 78717036 78717036 G A ROBO1 Nonsense_Mutation p.Q655* 0.41 TCGA-F1-6177-01 3 9027584 9027584 G A SRGAP3 Silent p.H973H 0.37 TCGA-F1-6177-01 3 9074429 9074430 - G SRGAP3 Frame_Shift_Ins p.C482Lfs*5 0.26 TCGA-F1-6177-01 3 9094775 9094775 A G SRGAP3 Missense_Mutation p.M420T 0.32 tolerated(0.23) probably_damaging(0.921) TCGA-F1-6177-01 3 97731224 97731224 C T GABRR3 RNA 0.49 TCGA-F1-6177-01 3 9972608 9972608 G T IL17RC Missense_Mutation p.W527C 0.38 deleterious(0) probably_damaging(0.999) TCGA-F1-6177-01 4 103189153 103189153 C T SLC39A8 Silent p.T308T 0.42 TCGA-F1-6177-01 4 10446552 10446553 - T ZNF518B Frame_Shift_Ins p.N467Kfs*2 0.33 TCGA-F1-6177-01 4 106600993 106600995 GAG - ARHGEF38 3'UTR 0.49 TCGA-F1-6177-01 4 110667424 110667424 G A CFI Silent p.F461F 0.43 TCGA-F1-6177-01 4 110882030 110882030 T C EGF Silent p.N358N 0.44 TCGA-F1-6177-01 4 113351824 113351824 C T ALPK1 Missense_Mutation p.T374M 0.45 tolerated(0.13) benign(0.007) TCGA-F1-6177-01 4 113567544 113567545 - A LARP7 Frame_Shift_Ins p.L90Ifs*4 0.29 TCGA-F1-6177-01 4 114199668 114199668 C T ANK2 Missense_Mutation p.A612V 0.37 probably_damaging(0.999) TCGA-F1-6177-01 4 123342458 123342458 T C ADAD1 Silent p.C510C 0.38 TCGA-F1-6177-01 4 123663986 123663986 A G BBS12 Silent p.S313S 0.39 TCGA-F1-6177-01 4 128564917 128564917 A - INTU Frame_Shift_Del p.N132Ifs*11 0.38 TCGA-F1-6177-01 4 134071394 134071394 C T PCDH10 Silent p.F33F 0.45 TCGA-F1-6177-01 4 134073108 134073108 G A PCDH10 Missense_Mutation p.A605T 0.39 deleterious(0) probably_damaging(0.999) TCGA-F1-6177-01 4 140291445 140291445 A - NAA15 Frame_Shift_Del p.N614Mfs*22 0.43 TCGA-F1-6177-01 4 144107096 144107096 A G USP38 Missense_Mutation p.I165V 0.41 tolerated(1) benign(0.001) TCGA-F1-6177-01 4 144141531 144141531 C T USP38 Silent p.N1017N 0.35 TCGA-F1-6177-01 4 144467126 144467126 G A SMARCA5 Missense_Mutation p.E816K 0.11 deleterious(0.04) benign(0.012) TCGA-F1-6177-01 4 145567864 145567864 G C HHIP Missense_Mutation p.A13P 0.36 deleterious_low_confidence(0) unknown(0) TCGA-F1-6177-01 4 145635449 145635449 G A HHIP Missense_Mutation p.G499D 0.40 deleterious(0.01) probably_damaging(1) TCGA-F1-6177-01 4 146058514 146058514 T - OTUD4 3'UTR 0.22 TCGA-F1-6177-01 4 147110847 147110847 T - LSM6 3'UTR 0.27 TCGA-F1-6177-01 4 151119187 151119187 C A DCLK2 Missense_Mutation p.S298Y 0.32 deleterious(0.03) benign(0.272) TCGA-F1-6177-01 4 151770151 151770151 C T LRBA Splice_Site p.X1387_splice 0.42 TCGA-F1-6177-01 4 154502038 154502038 G A KIAA0922 Missense_Mutation p.V241M 0.41 tolerated(0.08) possibly_damaging(0.591) TCGA-F1-6177-01 4 155490691 155490691 A C FGB Missense_Mutation p.K328N 0.38 deleterious(0) benign(0.216) TCGA-F1-6177-01 4 15607351 15607351 C T FBXL5 Missense_Mutation p.E691K 0.50 deleterious(0.03) benign(0.107) TCGA-F1-6177-01 4 156273869 156273869 T - MAP9 Frame_Shift_Del p.K567Rfs*13 0.27 TCGA-F1-6177-01 4 162402250 162402250 T G FSTL5 Missense_Mutation p.K510N 0.44 tolerated(0.08) probably_damaging(0.977) TCGA-F1-6177-01 4 164394918 164394918 C T TKTL2 5'UTR 0.39 TCGA-F1-6177-01 4 169337880 169337880 G T DDX60L Silent p.P893P 0.25 TCGA-F1-6177-01 4 178283483 178283483 G A NEIL3 Missense_Mutation p.R559H 0.26 deleterious(0) probably_damaging(0.993) TCGA-F1-6177-01 4 178911667 178911667 A G LINC01098 3'UTR 0.33 TCGA-F1-6177-01 4 185941544 185941544 C T HELT Missense_Mutation p.A201V 0.37 tolerated(0.31) probably_damaging(0.994) TCGA-F1-6177-01 4 189012847 189012847 C T TRIML2 Missense_Mutation p.A282T 0.39 deleterious(0.03) benign(0.297) TCGA-F1-6177-01 4 2242634 2242634 T - HAUS3 Frame_Shift_Del p.I14Lfs*27 0.33 TCGA-F1-6177-01 4 2515435 2515435 C T RNF4 Silent p.C154C 0.42 TCGA-F1-6177-01 4 26364239 26364239 G A RBPJ Intron 0.37 TCGA-F1-6177-01 4 2661728 2661728 A G FAM193A Silent p.T273T 0.42 TCGA-F1-6177-01 4 36109211 36109211 C T ARAP2 Missense_Mutation p.A1421T 0.37 tolerated(0.33) benign(0.001) TCGA-F1-6177-01 4 38134766 38134768 AAG - TBC1D1 In_Frame_Del p.E1067del 0.33 TCGA-F1-6177-01 4 39274601 39274601 T A WDR19 Missense_Mutation p.I1162N 0.23 tolerated(0.05) benign(0.053) TCGA-F1-6177-01 4 39462463 39462464 - A LIAS Frame_Shift_Ins p.E37Gfs*16 0.39 TCGA-F1-6177-01 4 40121855 40121855 A - N4BP2 Frame_Shift_Del p.Y711Ifs*45 0.34 TCGA-F1-6177-01 4 41747804 41747804 C T PHOX2B 3'UTR 0.50 TCGA-F1-6177-01 4 41748145 41748145 G T PHOX2B Nonsense_Mutation p.C208* 0.32 TCGA-F1-6177-01 4 41956148 41956148 C T TMEM33 Silent p.L226L 0.42 TCGA-F1-6177-01 4 47605501 47605501 G A CORIN Missense_Mutation p.R909W 0.34 deleterious(0) probably_damaging(0.993) TCGA-F1-6177-01 4 48038331 48038331 T - NIPAL1 3'UTR 0.39 TCGA-F1-6177-01 4 48894819 48894819 C T OCIAD2 Missense_Mutation p.R118H 0.41 tolerated(0.57) benign(0.039) TCGA-F1-6177-01 4 52861027 52861027 C T LRRC66 Missense_Mutation p.A721T 0.38 tolerated(0.86) benign(0.015) TCGA-F1-6177-01 4 52862277 52862277 C T LRRC66 Missense_Mutation p.R304H 0.32 tolerated(1) benign(0) TCGA-F1-6177-01 4 54319243 54319243 G A FIP1L1 Missense_Mutation p.R481H 0.32 tolerated(0.09) probably_damaging(0.992) TCGA-F1-6177-01 4 57898531 57898531 C A IGFBP7 Intron 0.42 TCGA-F1-6177-01 4 660390 660390 C T PDE6B Missense_Mutation p.T780I 0.34 deleterious(0.01) probably_damaging(0.997) TCGA-F1-6177-01 4 679630 679630 C T MFSD7 Silent p.P193P 0.36 TCGA-F1-6177-01 4 68372572 68372572 G T CENPC Missense_Mutation p.T662K 0.35 deleterious(0.05) benign(0.284) TCGA-F1-6177-01 4 68406764 68406764 G A CENPC Missense_Mutation p.R24C 0.38 deleterious(0) possibly_damaging(0.586) TCGA-F1-6177-01 4 68788633 68788633 G A TMPRSS11A Nonsense_Mutation p.R181* 0.41 TCGA-F1-6177-01 4 6925428 6925428 C A TBC1D14 Silent p.A104A 0.42 TCGA-F1-6177-01 4 70146674 70146674 T - UGT2B28 Frame_Shift_Del p.P155Lfs*33 0.48 TCGA-F1-6177-01 4 70360942 70360942 T - UGT2B4 Frame_Shift_Del p.N213Ifs*2 0.35 TCGA-F1-6177-01 4 7042894 7042894 C T CCDC96 3'UTR 0.59 TCGA-F1-6177-01 4 7056590 7056590 C A TADA2B Missense_Mutation p.L358I 0.37 deleterious(0) possibly_damaging(0.906) TCGA-F1-6177-01 4 70810695 70810695 A - CSN1S1 Frame_Shift_Del p.N179Ifs*16 0.37 TCGA-F1-6177-01 4 76489373 76489373 C T C4orf26 Missense_Mutation p.T54M 0.41 tolerated_low_confidence(0.21) possibly_damaging(0.897) TCGA-F1-6177-01 4 76781769 76781769 A G PPEF2 3'UTR 0.51 TCGA-F1-6177-01 4 7802200 7802200 A G AFAP1 Missense_Mutation p.L412P 0.43 deleterious(0) probably_damaging(0.997) TCGA-F1-6177-01 4 79420976 79420976 C T FRAS1 Nonsense_Mutation p.Q3073* 0.44 TCGA-F1-6177-01 4 8089996 8089996 G - ABLIM2 Frame_Shift_Del p.D120Tfs*3 0.32 TCGA-F1-6177-01 4 81967532 81967532 G T BMP3 Missense_Mutation p.K319N 0.39 tolerated(0.2) benign(0.057) TCGA-F1-6177-01 4 82031710 82031710 C T PRKG2 Missense_Mutation p.C611Y 0.27 deleterious(0) probably_damaging(0.999) TCGA-F1-6177-01 4 83891596 83891596 C T LIN54 Missense_Mutation p.G279R 0.47 tolerated(0.17) possibly_damaging(0.839) TCGA-F1-6177-01 4 83905318 83905318 A G LIN54 Missense_Mutation p.V227A 0.38 deleterious(0.03) benign(0.01) TCGA-F1-6177-01 4 84222192 84222192 G A HPSE Missense_Mutation p.R465W 0.36 deleterious(0.01) possibly_damaging(0.586) TCGA-F1-6177-01 4 88258505 88258505 G A HSD17B11 Missense_Mutation p.R276C 0.43 deleterious(0) benign(0.12) TCGA-F1-6177-01 4 89326069 89326069 A C HERC6 Missense_Mutation p.E378D 0.40 deleterious(0.03) benign(0.248) TCGA-F1-6177-01 4 951745 951745 G A TMEM175 Missense_Mutation p.A326T 0.35 tolerated(0.32) benign(0.079) TCGA-F1-6177-01 4 96069948 96069948 C T BMPR1B Missense_Mutation p.R406C 0.37 deleterious(0) probably_damaging(1) TCGA-F1-6177-01 4 96469892 96469892 G A UNC5C Silent p.A39A 0.59 TCGA-F1-6177-01 5 101834536 101834536 C T SLCO6A1 Missense_Mutation p.V5I 0.38 tolerated_low_confidence(0.17) possibly_damaging(0.796) TCGA-F1-6177-01 5 1076892 1076892 C T SLC12A7 Silent p.T555T 0.35 TCGA-F1-6177-01 5 1081834 1081834 G A SLC12A7 Silent p.H385H 0.35 TCGA-F1-6177-01 5 110096961 110096961 A G SLC25A46 Missense_Mutation p.R246G 0.05 deleterious(0) probably_damaging(0.999) TCGA-F1-6177-01 5 115426820 115426820 G A COMMD10 Silent p.A59A 0.32 TCGA-F1-6177-01 5 118500337 118500337 G A DMXL1 Missense_Mutation p.R1613Q 0.41 deleterious(0) probably_damaging(1) TCGA-F1-6177-01 5 121297667 121297667 G A SRFBP1 5'UTR 0.36 TCGA-F1-6177-01 5 122926143 122926144 - T CSNK1G3 Frame_Shift_Ins p.E297* 0.45 TCGA-F1-6177-01 5 127681104 127681104 G A FBN2 Silent p.R1054R 0.40 TCGA-F1-6177-01 5 134782379 134782379 C T C5orf20 Silent p.P140P 0.40 TCGA-F1-6177-01 5 135610472 135610473 - T TRPC7 Frame_Shift_Ins p.N339Kfs*70 0.27 TCGA-F1-6177-01 5 137206445 137206448 CAAA - MYOT Frame_Shift_Del p.K36Sfs*22 0.50 TCGA-F1-6177-01 5 137520324 137520324 G A KIF20A Missense_Mutation p.D548N 0.40 tolerated(0.79) benign(0.001) TCGA-F1-6177-01 5 138260288 138260288 C T CTNNA1 Nonsense_Mutation p.R546* 0.44 TCGA-F1-6177-01 5 140229215 140229215 G A PCDHA9 Missense_Mutation p.A379T 0.38 deleterious_low_confidence(0.02) benign(0.009) TCGA-F1-6177-01 5 140237471 140237471 C T PCDHA10 Missense_Mutation p.A613V 0.33 tolerated_low_confidence(0.22) benign(0.014) TCGA-F1-6177-01 5 140346986 140346986 G A PCDHAC2 Missense_Mutation p.R212H 0.29 deleterious(0.01) possibly_damaging(0.871) TCGA-F1-6177-01 5 140480154 140480154 G A PCDHB3 5'Flank 0.36 TCGA-F1-6177-01 5 140502701 140502701 C - PCDHB4 Frame_Shift_Del p.G375Efs*6 0.28 TCGA-F1-6177-01 5 140559234 140559234 C T PCDHB8 Missense_Mutation p.P540L 0.20 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-F1-6177-01 5 140589805 140589805 C T PCDHB12 Silent p.S442S 0.42 TCGA-F1-6177-01 5 140593986 140593986 C T PCDHB13 Silent p.C97C 0.33 TCGA-F1-6177-01 5 140712070 140712070 C T PCDHGA1 Missense_Mutation p.R607C 0.45 deleterious_low_confidence(0.02) probably_damaging(0.982) TCGA-F1-6177-01 5 140743963 140743963 G A PCDHGA5 Silent p.T22T 0.44 TCGA-F1-6177-01 5 140745966 140745966 C T PCDHGA5 Missense_Mutation p.T690I 0.37 deleterious_low_confidence(0) possibly_damaging(0.694) TCGA-F1-6177-01 5 140763024 140763024 C T PCDHGA7 Silent p.D186D 0.48 TCGA-F1-6177-01 5 140763850 140763850 G A PCDHGA7 Missense_Mutation p.A462T 0.46 deleterious_low_confidence(0.02) benign(0.015) TCGA-F1-6177-01 5 140797738 140797738 G T PCDHGB7 Missense_Mutation p.L104F 0.05 deleterious(0.01) probably_damaging(1) TCGA-F1-6177-01 5 147692956 147692956 A - SPINK7 Frame_Shift_Del p.V30Wfs*42 0.30 TCGA-F1-6177-01 5 147782052 147782052 A - FBXO38 Frame_Shift_Del p.I191Ffs*6 0.27 TCGA-F1-6177-01 5 148407373 148407373 C T SH3TC2 Missense_Mutation p.R641H 0.56 deleterious(0.02) possibly_damaging(0.721) TCGA-F1-6177-01 5 148758801 148758801 C T IL17B 5'UTR 0.24 TCGA-F1-6177-01 5 150905459 150905459 C G FAT2 Missense_Mutation p.G3459A 0.34 probably_damaging(1) TCGA-F1-6177-01 5 156899809 156899809 C T NIPAL4 Silent p.C414C 0.39 TCGA-F1-6177-01 5 167957455 167957455 C T FBLL1 Missense_Mutation p.R316W 0.53 deleterious(0) probably_damaging(0.997) TCGA-F1-6177-01 5 169015404 169015404 A - SPDL1 5'UTR 0.42 TCGA-F1-6177-01 5 169031304 169031304 G A SPDL1 3'UTR 0.41 TCGA-F1-6177-01 5 170736618 170736618 G A TLX3 Silent p.A83A 0.40 TCGA-F1-6177-01 5 176522651 176522651 C T FGFR4 Missense_Mutation p.P583L 0.50 tolerated(0.07) benign(0.024) TCGA-F1-6177-01 5 176759221 176759221 A C LMAN2 Missense_Mutation p.F313V 0.26 tolerated(0.24) benign(0.255) TCGA-F1-6177-01 5 176886118 176886118 C T DBN1 Silent p.P371P 0.53 TCGA-F1-6177-01 5 178418555 178418555 C - GRM6 Frame_Shift_Del p.V243Sfs*21 0.25 TCGA-F1-6177-01 5 179315143 179315143 A G TBC1D9B Missense_Mutation p.I405T 0.36 tolerated(0.39) benign(0) TCGA-F1-6177-01 5 180030183 180030183 C T FLT4 3'UTR 0.48 TCGA-F1-6177-01 5 180219454 180219454 G A MGAT1 Missense_Mutation p.P173L 0.50 benign(0.033) TCGA-F1-6177-01 5 26885740 26885740 C T CDH9 Missense_Mutation p.C622Y 0.42 deleterious(0) probably_damaging(0.991) TCGA-F1-6177-01 5 3599423 3599423 G A IRX1 Missense_Mutation p.G121S 0.33 deleterious(0) probably_damaging(0.987) TCGA-F1-6177-01 5 36985083 36985083 A - NIPBL Frame_Shift_Del p.K603Sfs*11 0.32 TCGA-F1-6177-01 5 37045566 37045566 G A NIPBL Missense_Mutation p.S2122N 0.41 tolerated(0.5) benign(0.001) TCGA-F1-6177-01 5 37167150 37167150 T - C5orf42 Frame_Shift_Del p.R2467Gfs*18 0.37 TCGA-F1-6177-01 5 38350644 38350644 T C EGFLAM Silent p.R111R 0.38 TCGA-F1-6177-01 5 38407192 38407192 G - EGFLAM Frame_Shift_Del p.G366Afs*32 0.29 TCGA-F1-6177-01 5 40999839 40999840 - GT MROH2B Frame_Shift_Ins p.S1509Tfs*12 0.22 TCGA-F1-6177-01 5 41382192 41382192 T C PLCXD3 Missense_Mutation p.Y183C 0.32 deleterious(0.02) probably_damaging(0.962) TCGA-F1-6177-01 5 43280659 43280659 G A NIM1K Missense_Mutation p.R380H 0.35 deleterious(0.05) benign(0.313) TCGA-F1-6177-01 5 44388639 44388639 G A FGF10 Missense_Mutation p.A49V 0.38 tolerated(0.17) benign(0.008) TCGA-F1-6177-01 5 45645327 45645327 C T HCN1 Missense_Mutation p.R270Q 0.33 deleterious(0) probably_damaging(0.994) TCGA-F1-6177-01 5 50059056 50059056 G A PARP8 Silent p.G166G 0.44 TCGA-F1-6177-01 5 5462807 5462807 C T KIAA0947 Silent p.S1120S 0.54 TCGA-F1-6177-01 5 55247315 55247315 A G IL6ST Missense_Mutation p.F606S 0.39 tolerated(0.05) benign(0.408) TCGA-F1-6177-01 5 59982801 59982801 C T DEPDC1B Missense_Mutation p.R101H 0.35 tolerated(0.15) benign(0.381) TCGA-F1-6177-01 5 6372636 6372636 C - MED10 Frame_Shift_Del p.E130Rfs*14 0.29 TCGA-F1-6177-01 5 66430427 66430427 C T MAST4 Missense_Mutation p.A768V 0.45 probably_damaging(0.983) TCGA-F1-6177-01 5 67522741 67522741 A - PIK3R1 Frame_Shift_Del p.I82Sfs*32 0.32 TCGA-F1-6177-01 5 71491610 71491610 G A MAP1B Missense_Mutation p.A810T 0.49 unknown(0) TCGA-F1-6177-01 5 71756601 71756601 G A ZNF366 Silent p.S241S 0.39 TCGA-F1-6177-01 5 72876008 72876008 A - UTP15 3'UTR 0.62 TCGA-F1-6177-01 5 74892070 74892070 A G POLK Missense_Mutation p.N518D 0.46 tolerated(0.06) benign(0.001) TCGA-F1-6177-01 5 79734068 79734068 G A ZFYVE16 Missense_Mutation p.A522T 0.52 tolerated(0.09) benign(0.001) TCGA-F1-6177-01 5 82352893 82352893 T - TMEM167A 3'UTR 0.24 TCGA-F1-6177-01 5 82491728 82491728 T C XRCC4 Missense_Mutation p.L152P 0.34 deleterious(0.02) probably_damaging(0.995) TCGA-F1-6177-01 5 82937478 82937478 T C HAPLN1 Missense_Mutation p.Y301C 0.32 deleterious(0) possibly_damaging(0.86) TCGA-F1-6177-01 5 884073 884073 G A BRD9 Missense_Mutation p.R316W 0.44 deleterious(0) probably_damaging(0.953) TCGA-F1-6177-01 5 89990228 89990228 C T GPR98 Missense_Mutation p.A2552V 0.33 benign(0.066) TCGA-F1-6177-01 5 90672541 90672541 T C ARRDC3 Missense_Mutation p.Y136C 0.45 deleterious(0) probably_damaging(0.999) TCGA-F1-6177-01 5 95119538 95119538 C T RHOBTB3 Silent p.A498A 0.39 TCGA-F1-6177-01 5 99921979 99921980 - G FAM174A 3'UTR 0.33 TCGA-F1-6177-01 6 105474236 105474236 A - LIN28B Frame_Shift_Del p.K89Nfs*11 0.30 TCGA-F1-6177-01 6 110428390 110428390 C A WASF1 Missense_Mutation p.G144C 0.25 deleterious(0.01) unknown(0) TCGA-F1-6177-01 6 111696108 111696108 A - REV3L Frame_Shift_Del p.F1150Lfs*15 0.29 TCGA-F1-6177-01 6 11191156 11191156 C T NEDD9 Missense_Mutation p.A316T 0.36 deleterious(0.02) benign(0.281) TCGA-F1-6177-01 6 112382213 112382213 G A WISP3 Missense_Mutation p.G41D 0.45 tolerated(0.27) benign(0.001) TCGA-F1-6177-01 6 116325059 116325059 T - FRK Frame_Shift_Del p.G150Efs*8 0.25 TCGA-F1-6177-01 6 116757924 116757924 C T DSE Missense_Mutation p.R765W 0.44 deleterious_low_confidence(0.02) benign(0.401) TCGA-F1-6177-01 6 127771252 127771252 T - KIAA0408 Frame_Shift_Del p.K127Nfs*4 0.30 TCGA-F1-6177-01 6 128134599 128134599 G A THEMIS Missense_Mutation p.T396M 0.46 tolerated(0.05) benign(0.105) TCGA-F1-6177-01 6 128150884 128150884 A G THEMIS Missense_Mutation p.M149T 0.42 tolerated(0.42) benign(0.003) TCGA-F1-6177-01 6 130152420 130152420 T C TMEM244 3'Flank 0.52 TCGA-F1-6177-01 6 130476087 130476087 C A SAMD3 Missense_Mutation p.W302C 0.07 deleterious(0.01) probably_damaging(0.935) TCGA-F1-6177-01 6 131206333 131206333 G T EPB41L2 Missense_Mutation p.P579H 0.37 deleterious(0.01) possibly_damaging(0.728) TCGA-F1-6177-01 6 131481276 131481276 A - AKAP7 Frame_Shift_Del p.K79Rfs*21 0.36 TCGA-F1-6177-01 6 13160486 13160486 C T PHACTR1 Nonsense_Mutation p.R156* 0.42 TCGA-F1-6177-01 6 133138636 133138636 T C RPS12 Silent p.S118S 0.44 TCGA-F1-6177-01 6 134349584 134349584 A - SLC2A12 Frame_Shift_Del p.L460* 0.30 TCGA-F1-6177-01 6 134350099 134350099 A - SLC2A12 Frame_Shift_Del p.F288Lfs*18 0.27 TCGA-F1-6177-01 6 134350554 134350554 G A SLC2A12 Missense_Mutation p.R137C 0.45 deleterious(0) probably_damaging(1) TCGA-F1-6177-01 6 135784283 135784284 - T AHI1 Frame_Shift_Ins p.T304Nfs*6 0.43 TCGA-F1-6177-01 6 13644899 13644899 C T RANBP9 Silent p.G330G 0.39 TCGA-F1-6177-01 6 143382143 143382143 C A AIG1 Silent p.I27I 0.37 TCGA-F1-6177-01 6 144724272 144724272 C T UTRN Silent p.D31D 0.25 TCGA-F1-6177-01 6 144801065 144801065 G T UTRN Missense_Mutation p.D1152Y 0.37 deleterious(0) probably_damaging(1) TCGA-F1-6177-01 6 144811233 144811233 T C UTRN Silent p.H1387H 0.43 TCGA-F1-6177-01 6 146350537 146350537 G A GRM1 5'UTR 0.46 TCGA-F1-6177-01 6 146673400 146673400 G A GRM1 Missense_Mutation p.E401K 0.47 tolerated(0.48) benign(0.036) TCGA-F1-6177-01 6 146720020 146720020 A G GRM1 Silent p.V615V 0.43 TCGA-F1-6177-01 6 149285779 149285779 C A UST Intron 0.48 TCGA-F1-6177-01 6 149719193 149719193 C T TAB2 Missense_Mutation p.A618V 0.26 deleterious(0.02) benign(0.15) TCGA-F1-6177-01 6 150023018 150023018 C T LATS1 Missense_Mutation p.R82Q 0.48 deleterious_low_confidence(0) possibly_damaging(0.564) TCGA-F1-6177-01 6 152772296 152772296 A G SYNE1 Silent p.I1024I 0.52 TCGA-F1-6177-01 6 155451055 155451055 C A TIAM2 Missense_Mutation p.S233Y 0.09 deleterious(0) possibly_damaging(0.886) TCGA-F1-6177-01 6 155458397 155458397 T C TIAM2 Silent p.S427S 0.36 TCGA-F1-6177-01 6 155757642 155757643 - AG NOX3 Frame_Shift_Ins p.H237Cfs*37 0.35 TCGA-F1-6177-01 6 158449919 158449919 C T SYNJ2 Missense_Mutation p.R116C 0.43 deleterious(0) probably_damaging(0.998) TCGA-F1-6177-01 6 158924493 158924493 C T TULP4 Silent p.Y1266Y 0.38 TCGA-F1-6177-01 6 160468904 160468904 C T IGF2R Silent p.T770T 0.20 TCGA-F1-6177-01 6 160557309 160557309 A G SLC22A1 Missense_Mutation p.I299M 0.42 tolerated(1) benign(0.019) TCGA-F1-6177-01 6 161139414 161139414 C T PLG Silent p.S292S 0.36 TCGA-F1-6177-01 6 162394359 162394359 T C PARK2 Missense_Mutation p.T237A 0.38 tolerated(0.08) benign(0.015) TCGA-F1-6177-01 6 16327924 16327924 C A ATXN1 Missense_Mutation p.Q206H 0.25 tolerated_low_confidence(0.1) unknown(0) TCGA-F1-6177-01 6 163899920 163899920 A - QKI Frame_Shift_Del p.K134Rfs*14 0.68 TCGA-F1-6177-01 6 166580950 166580950 C T T Missense_Mutation p.V44M 0.43 deleterious(0) probably_damaging(0.97) TCGA-F1-6177-01 6 166721232 166721232 C T PRR18 Silent p.A133A 0.27 TCGA-F1-6177-01 6 18222307 18222307 A - KDM1B 3'UTR 0.32 TCGA-F1-6177-01 6 24843662 24843662 A G FAM65B Missense_Mutation p.S450P 0.21 tolerated(0.21) benign(0.009) TCGA-F1-6177-01 6 25581667 25581667 G A LRRC16A Silent p.A1002A 0.54 TCGA-F1-6177-01 6 26240972 26240972 C - HIST1H4F 3'UTR 0.29 TCGA-F1-6177-01 6 26250607 26250607 G A HIST1H3F Missense_Mutation p.A76V 0.42 deleterious_low_confidence(0.02) probably_damaging(0.994) TCGA-F1-6177-01 6 26637632 26637632 T C ZNF322 Missense_Mutation p.S384G 0.31 tolerated(0.11) benign(0) TCGA-F1-6177-01 6 27806830 27806830 C T HIST1H2BN 3'UTR 0.09 TCGA-F1-6177-01 6 27834647 27834647 C T HIST1H1B Missense_Mutation p.A221T 0.24 deleterious_low_confidence(0) unknown(0) TCGA-F1-6177-01 6 28872085 28872085 C T TRIM27 Missense_Mutation p.R435Q 0.47 tolerated(0.21) possibly_damaging(0.88) TCGA-F1-6177-01 6 28876589 28876590 - ATTTT TRIM27 Frame_Shift_Ins p.Q306Kfs*5 0.24 TCGA-F1-6177-01 6 29080104 29080104 T C OR2J3 Missense_Mutation p.L146P 0.37 tolerated(0.21) possibly_damaging(0.715) TCGA-F1-6177-01 6 29365367 29365367 G T OR12D2 Missense_Mutation p.K297N 0.08 deleterious(0.02) benign(0.043) TCGA-F1-6177-01 6 30036995 30036995 G A PPP1R11 Missense_Mutation p.R98Q 0.41 tolerated(0.28) benign(0) TCGA-F1-6177-01 6 3017128 3017128 C T NQO2 Missense_Mutation p.A143V 0.44 tolerated(0.06) benign(0.062) TCGA-F1-6177-01 6 30608312 30608312 G A ATAT1 Missense_Mutation p.R183Q 0.32 deleterious(0.04) possibly_damaging(0.754) TCGA-F1-6177-01 6 31083778 31083778 T C CDSN 3'UTR 0.39 TCGA-F1-6177-01 6 3137678 3137678 C A BPHL Silent p.T205T 0.44 TCGA-F1-6177-01 6 31431401 31431401 A G HCP5 RNA 0.42 TCGA-F1-6177-01 6 31595599 31595599 C T PRRC2A Missense_Mutation p.R450W 0.39 unknown(0) TCGA-F1-6177-01 6 31765430 31765430 A - LSM2 3'UTR 0.38 TCGA-F1-6177-01 6 31924611 31924611 T C NELFE Silent p.L50L 0.42 TCGA-F1-6177-01 6 32024489 32024489 G A TNXB Missense_Mutation p.R2673W 0.40 probably_damaging(0.995) TCGA-F1-6177-01 6 32119644 32119645 - G PRRT1 5'UTR 0.32 TCGA-F1-6177-01 6 33245054 33245054 C - B3GALT4 5'UTR 0.50 TCGA-F1-6177-01 6 33245893 33245893 C T B3GALT4 Missense_Mutation p.R233C 0.40 deleterious(0) probably_damaging(0.956) TCGA-F1-6177-01 6 34214308 34214308 G A C6orf1 Missense_Mutation p.H155Y 0.32 tolerated_low_confidence(0.11) benign(0.031) TCGA-F1-6177-01 6 35392251 35392251 G A PPARD Missense_Mutation p.R258Q 0.31 tolerated(0.2) probably_damaging(0.954) TCGA-F1-6177-01 6 36733117 36733117 G A CPNE5 Silent p.D258D 0.29 TCGA-F1-6177-01 6 36867370 36867371 - C C6orf89 Frame_Shift_Ins p.Q61Afs*10 0.32 TCGA-F1-6177-01 6 38562036 38562036 C T BTBD9 Missense_Mutation p.A85T 0.48 tolerated(0.51) unknown(0) TCGA-F1-6177-01 6 38754702 38754702 T A DNAH8 Missense_Mutation p.L636M 0.50 possibly_damaging(0.882) TCGA-F1-6177-01 6 39507819 39507819 G A KIF6 Silent p.S535S 0.45 TCGA-F1-6177-01 6 4031881 4031881 A - PRPF4B Frame_Shift_Del p.K46Rfs*58 0.39 TCGA-F1-6177-01 6 46661723 46661723 G A TDRD6 Missense_Mutation p.R1953H 0.42 tolerated(0.53) benign(0) TCGA-F1-6177-01 6 47682279 47682279 C T GPR115 Missense_Mutation p.T433M 0.45 deleterious(0.02) probably_damaging(0.994) TCGA-F1-6177-01 6 47846834 47846835 - T PTCHD4 Frame_Shift_Ins p.P583Afs*9 0.28 TCGA-F1-6177-01 6 50682856 50682856 C T TFAP2D Missense_Mutation p.R23C 0.33 deleterious(0) possibly_damaging(0.876) TCGA-F1-6177-01 6 51524188 51524188 A G PKHD1 Missense_Mutation p.V3579A 0.07 tolerated(0.8) benign(0.001) TCGA-F1-6177-01 6 52843097 52843097 A - GSTA4 3'UTR 0.38 TCGA-F1-6177-01 6 56473302 56473302 G A DST Intron 0.39 TCGA-F1-6177-01 6 57012447 57012447 G A ZNF451 Missense_Mutation p.G522R 0.47 deleterious(0) probably_damaging(1) TCGA-F1-6177-01 6 5999288 5999288 G A NRN1 Missense_Mutation p.A117V 0.74 tolerated(0.09) benign(0.102) TCGA-F1-6177-01 6 62995887 62995887 C T KHDRBS2 5'UTR 0.43 TCGA-F1-6177-01 6 70990735 70990735 C T COL9A1 Missense_Mutation p.R295Q 0.26 unknown(0) TCGA-F1-6177-01 6 71248027 71248027 G A FAM135A Missense_Mutation p.G1384D 0.29 deleterious(0) probably_damaging(1) TCGA-F1-6177-01 6 73952206 73952206 G A KHDC1 Missense_Mutation p.P85L 0.40 tolerated(0.06) benign(0.011) TCGA-F1-6177-01 6 75853032 75853032 G T COL12A1 Missense_Mutation p.P1588H 0.24 possibly_damaging(0.841) TCGA-F1-6177-01 6 75861886 75861886 C T COL12A1 Missense_Mutation p.V1266M 0.36 probably_damaging(0.999) TCGA-F1-6177-01 6 78172719 78172719 A G HTR1B Silent p.T134T 0.42 TCGA-F1-6177-01 6 80720598 80720598 G A TTK Missense_Mutation p.M179I 0.10 tolerated(0.19) benign(0.008) TCGA-F1-6177-01 6 80720630 80720630 A - TTK Frame_Shift_Del p.K192Sfs*18 0.27 TCGA-F1-6177-01 6 84233649 84233649 T C PRSS35 Silent p.H163H 0.40 TCGA-F1-6177-01 6 88853588 88853588 G A CNR1 Missense_Mutation p.A469V 0.38 deleterious_low_confidence(0) possibly_damaging(0.84) TCGA-F1-6177-01 6 91226170 91226170 A - MAP3K7 3'UTR 0.31 TCGA-F1-6177-01 6 99831610 99831610 G A COQ3 Missense_Mutation p.T66M 0.46 tolerated(1) benign(0.001) TCGA-F1-6177-01 7 100086958 100086958 G A NYAP1 Silent p.P538P 0.56 TCGA-F1-6177-01 7 100279236 100279236 C A GIGYF1 3'UTR 0.29 TCGA-F1-6177-01 7 100284988 100284988 C T GIGYF1 Missense_Mutation p.E139K 0.59 deleterious(0.01) unknown(0) TCGA-F1-6177-01 7 100417393 100417393 G A EPHB4 Silent p.C361C 0.73 TCGA-F1-6177-01 7 100463810 100463810 G T SLC12A9 Missense_Mutation p.E776D 0.64 tolerated(0.44) benign(0.009) TCGA-F1-6177-01 7 100491548 100491548 T C ACHE Silent p.Q102Q 0.62 TCGA-F1-6177-01 7 100817842 100817842 G A NAT16 Missense_Mutation p.R83C 0.13 deleterious(0.03) benign(0.08) TCGA-F1-6177-01 7 101952177 101952177 C T SH2B2 Silent p.C347C 0.28 TCGA-F1-6177-01 7 102309449 102309449 A G POLR2J2 Missense_Mutation p.I18T 0.27 deleterious(0) possibly_damaging(0.687) TCGA-F1-6177-01 7 103113350 103113350 C T RELN Missense_Mutation p.R3431H 0.48 tolerated_low_confidence(0.06) possibly_damaging(0.629) TCGA-F1-6177-01 7 105182902 105182902 A - RINT1 Frame_Shift_Del p.N109Mfs*28 0.36 TCGA-F1-6177-01 7 105195574 105195574 T C RINT1 Missense_Mutation p.M524T 0.66 deleterious(0) possibly_damaging(0.475) TCGA-F1-6177-01 7 107395909 107395909 A - CBLL1 Frame_Shift_Del p.K140Rfs*52 0.38 TCGA-F1-6177-01 7 107708575 107708575 C A LAMB4 Nonsense_Mutation p.G778* 0.57 TCGA-F1-6177-01 7 108155904 108155907 ATAT - PNPLA8 Frame_Shift_Del p.Y10Ffs*31 0.28 TCGA-F1-6177-01 7 112098933 112098933 C T IFRD1 Missense_Mutation p.R143C 0.28 tolerated(0.12) benign(0.016) TCGA-F1-6177-01 7 113518220 113518220 A G PPP1R3A Missense_Mutation p.V976A 0.25 tolerated(0.12) benign(0.006) TCGA-F1-6177-01 7 116165024 116165024 C T CAV1 5'UTR 0.56 TCGA-F1-6177-01 7 116166479 116166479 C T CAV1 Intron 0.60 TCGA-F1-6177-01 7 116339279 116339279 C T MET Silent p.T47T 0.28 TCGA-F1-6177-01 7 117251692 117251692 G A CFTR Missense_Mutation p.R1066H 0.44 deleterious(0) probably_damaging(0.99) TCGA-F1-6177-01 7 117431318 117431318 G - CTTNBP2 Frame_Shift_Del p.G645Dfs*2 0.43 TCGA-F1-6177-01 7 12263988 12263988 C T TMEM106B Missense_Mutation p.R140C 0.51 tolerated(0.1) possibly_damaging(0.745) TCGA-F1-6177-01 7 127235581 127235581 A G FSCN3 Missense_Mutation p.D122G 0.33 tolerated(0.23) benign(0.015) TCGA-F1-6177-01 7 128355644 128355644 C T FAM71F1 Missense_Mutation p.A50V 0.54 tolerated(1) benign(0) TCGA-F1-6177-01 7 130007829 130007829 T G CPA5 Missense_Mutation p.L374R 0.49 deleterious(0) probably_damaging(0.928) TCGA-F1-6177-01 7 135636279 135636280 - T MTPN Frame_Shift_Ins p.G58Rfs*5 0.40 TCGA-F1-6177-01 7 138333785 138333785 G A SVOPL Missense_Mutation p.P211L 0.34 deleterious(0.02) possibly_damaging(0.554) TCGA-F1-6177-01 7 141673015 141673015 C T TAS2R38 Missense_Mutation p.V159I 0.28 tolerated(0.36) benign(0.03) TCGA-F1-6177-01 7 141736720 141736720 C - MGAM Frame_Shift_Del p.L726Sfs*52 0.37 TCGA-F1-6177-01 7 142045544 142045544 G A TRBV4-2 Silent p.T24T 0.20 TCGA-F1-6177-01 7 142630710 142630711 GT - TRPV5 5'UTR 0.53 TCGA-F1-6177-01 7 143141232 143141232 T C TAS2R60 Silent p.L229L 0.28 TCGA-F1-6177-01 7 143771428 143771428 T C OR2A25 Missense_Mutation p.L39S 0.54 deleterious(0) probably_damaging(0.938) TCGA-F1-6177-01 7 143807297 143807297 G A OR2A2 Missense_Mutation p.G208R 0.28 deleterious(0.02) possibly_damaging(0.57) TCGA-F1-6177-01 7 146536847 146536847 C T CNTNAP2 Missense_Mutation p.L85F 0.58 deleterious(0.02) probably_damaging(0.999) TCGA-F1-6177-01 7 148768876 148768876 G A ZNF786 Missense_Mutation p.R330C 0.21 tolerated(0.06) benign(0) TCGA-F1-6177-01 7 149500639 149500639 C T SSPO RNA 0.37 TCGA-F1-6177-01 7 149543278 149543278 G A ZNF862 Missense_Mutation p.G59R 0.58 tolerated_low_confidence(0.2) benign(0.002) TCGA-F1-6177-01 7 150698398 150698398 G - NOS3 Frame_Shift_Del p.G440Afs*64 0.24 TCGA-F1-6177-01 7 150739068 150739068 G A ABCB8 Silent p.T546T 0.52 TCGA-F1-6177-01 7 151841898 151841898 G A KMT2C Missense_Mutation p.A4748V 0.63 probably_damaging(0.998) TCGA-F1-6177-01 7 151877105 151877105 G T KMT2C Missense_Mutation p.P2419H 0.56 possibly_damaging(0.779) TCGA-F1-6177-01 7 151891162 151891162 G A KMT2C Missense_Mutation p.A1531V 0.23 benign(0.005) TCGA-F1-6177-01 7 151935847 151935847 C T KMT2C Missense_Mutation p.R866Q 0.24 probably_damaging(0.991) TCGA-F1-6177-01 7 156451256 156451257 - A RNF32 Frame_Shift_Ins p.F229Vfs*17 0.23 TCGA-F1-6177-01 7 156752777 156752777 G T NOM1 Missense_Mutation p.R514M 0.56 deleterious(0) probably_damaging(1) TCGA-F1-6177-01 7 1589976 1589976 G A TMEM184A Silent p.G147G 0.29 TCGA-F1-6177-01 7 20826480 20826480 T - SP8 5'UTR 0.59 TCGA-F1-6177-01 7 22197474 22197474 T - RAPGEF5 Frame_Shift_Del p.K366Rfs*22 0.26 TCGA-F1-6177-01 7 2404086 2404086 G - EIF3B Frame_Shift_Del p.G362Efs*28 0.29 TCGA-F1-6177-01 7 24874171 24874171 G A OSBPL3 Silent p.C560C 0.06 TCGA-F1-6177-01 7 26232884 26232885 - C HNRNPA2B1 Frame_Shift_Ins p.P330Tfs*37 0.11 TCGA-F1-6177-01 7 27147495 27147495 G - HOXA3 3'UTR 0.37 TCGA-F1-6177-01 7 29070262 29070262 T - CPVL Frame_Shift_Del p.V418Ffs*24 0.28 TCGA-F1-6177-01 7 31617908 31617908 G A CCDC129 Missense_Mutation p.A370T 0.54 tolerated(0.1) possibly_damaging(0.728) TCGA-F1-6177-01 7 32914609 32914609 G T KBTBD2 Missense_Mutation p.L111I 0.05 tolerated(0.08) probably_damaging(0.988) TCGA-F1-6177-01 7 4304818 4304818 C T SDK1 Silent p.S2148S 0.25 TCGA-F1-6177-01 7 44120414 44120414 G - POLM Frame_Shift_Del p.P97Qfs*6 0.43 TCGA-F1-6177-01 7 44189576 44189576 G A GCK Missense_Mutation p.R192W 0.30 deleterious(0) probably_damaging(0.999) TCGA-F1-6177-01 7 44800124 44800124 A G ZMIZ2 Missense_Mutation p.Q391R 0.08 deleterious(0.01) possibly_damaging(0.811) TCGA-F1-6177-01 7 48314550 48314550 A - ABCA13 Frame_Shift_Del p.N1764Tfs*18 0.11 TCGA-F1-6177-01 7 4917266 4917266 C T RADIL Missense_Mutation p.A169T 0.67 tolerated(0.33) benign(0.024) TCGA-F1-6177-01 7 50450374 50450374 C T IKZF1 Silent p.D186D 0.48 TCGA-F1-6177-01 7 50468106 50468106 C T IKZF1 Silent p.D405D 0.27 TCGA-F1-6177-01 7 50468336 50468336 C T IKZF1 3'UTR 0.20 TCGA-F1-6177-01 7 50799979 50799979 G A GRB10 Missense_Mutation p.P14L 0.62 deleterious_low_confidence(0) benign(0.23) TCGA-F1-6177-01 7 5331406 5331406 C T SLC29A4 Silent p.Y166Y 0.55 TCGA-F1-6177-01 7 55269026 55269026 G A EGFR Missense_Mutation p.R1031Q 0.31 tolerated(0.16) probably_damaging(0.998) TCGA-F1-6177-01 7 5567376 5567376 C T ACTB 3'UTR 0.28 TCGA-F1-6177-01 7 5632920 5632920 G A FSCN1 Missense_Mutation p.R118H 0.26 tolerated(0.06) probably_damaging(0.995) TCGA-F1-6177-01 7 6012893 6012893 A G PMS2 3'UTR 0.33 TCGA-F1-6177-01 7 6012920 6012920 T - PMS2 3'UTR 0.33 TCGA-F1-6177-01 7 6196576 6196577 CT - USP42 Frame_Shift_Del p.S1280Wfs*13 0.40 TCGA-F1-6177-01 7 64438393 64438393 T A ZNF117 3'UTR 0.48 TCGA-F1-6177-01 7 6449537 6449537 G A DAGLB Silent p.S650S 0.30 TCGA-F1-6177-01 7 65599284 65599284 A - CRCP Frame_Shift_Del p.T56Hfs*18 0.21 TCGA-F1-6177-01 7 72722449 72722451 CTT - NSUN5 In_Frame_Del p.K65del 0.28 TCGA-F1-6177-01 7 74211702 74211702 C T GTF2IRD2 Missense_Mutation p.G717R 0.58 deleterious(0.01) probably_damaging(1) TCGA-F1-6177-01 7 75048170 75048170 G A POM121C Missense_Mutation p.A958V 0.29 deleterious(0.01) benign(0.209) TCGA-F1-6177-01 7 796442 796442 C T HEATR2 Silent p.V427V 0.57 TCGA-F1-6177-01 7 82582944 82582944 T - PCLO Frame_Shift_Del p.K2442Sfs*2 0.23 TCGA-F1-6177-01 7 83037703 83037703 G A SEMA3E Silent p.D217D 0.78 TCGA-F1-6177-01 7 87436695 87436695 C T RUNDC3B Silent p.L339L 0.24 TCGA-F1-6177-01 7 91715653 91715653 C T AKAP9 Missense_Mutation p.R3046W 0.60 possibly_damaging(0.599) TCGA-F1-6177-01 7 91752494 91752494 T - CYP51A1 Frame_Shift_Del p.K342Nfs*4 0.34 TCGA-F1-6177-01 7 91936914 91936914 A - ANKIB1 Frame_Shift_Del p.N146Tfs*12 0.27 TCGA-F1-6177-01 7 94185017 94185017 T - CASD1 Frame_Shift_Del p.C783Vfs*21 0.36 TCGA-F1-6177-01 7 95045560 95045560 A - PON2 Frame_Shift_Del p.F65Lfs*5 0.39 TCGA-F1-6177-01 7 97821334 97821334 C T LMTK2 Silent p.P519P 0.29 TCGA-F1-6177-01 7 98557049 98557049 G A TRRAP Missense_Mutation p.R2135Q 0.64 benign(0.14) TCGA-F1-6177-01 7 98988840 98988840 G A ARPC1B Silent p.A249A 0.31 TCGA-F1-6177-01 8 103289349 103289349 T - UBR5 Frame_Shift_Del p.E2121Kfs*28 0.40 TCGA-F1-6177-01 8 104388039 104388039 C T CTHRC1 Missense_Mutation p.P75L 0.26 deleterious(0.05) probably_damaging(0.997) TCGA-F1-6177-01 8 105235897 105235897 G - RIMS2 Intron 0.22 TCGA-F1-6177-01 8 105509429 105509429 A - LRP12 Frame_Shift_Del p.C451Afs*37 0.23 TCGA-F1-6177-01 8 105509439 105509440 - T LRP12 Frame_Shift_Ins p.N447Kfs*13 0.59 TCGA-F1-6177-01 8 10755924 10755924 G A XKR6 Silent p.I488I 0.71 TCGA-F1-6177-01 8 109094916 109094916 G A RSPO2 5'UTR 0.18 TCGA-F1-6177-01 8 109489111 109489111 G C EMC2 Missense_Mutation p.G231A 0.26 deleterious(0.01) probably_damaging(0.97) TCGA-F1-6177-01 8 109796626 109796626 C T TMEM74 Silent p.A234A 0.39 TCGA-F1-6177-01 8 110099973 110099973 G A TRHR Missense_Mutation p.A78T 0.29 deleterious(0) probably_damaging(0.982) TCGA-F1-6177-01 8 110441683 110441683 C T PKHD1L1 Nonsense_Mutation p.Q1039* 0.19 TCGA-F1-6177-01 8 110478930 110478930 G A PKHD1L1 Missense_Mutation p.R2846H 0.26 deleterious(0) probably_damaging(0.997) TCGA-F1-6177-01 8 113662424 113662425 - T CSMD3 Frame_Shift_Ins p.N1053Kfs*12 0.27 TCGA-F1-6177-01 8 116426160 116426160 T - TRPS1 3'UTR 0.35 TCGA-F1-6177-01 8 116599370 116599370 C T TRPS1 Missense_Mutation p.R853Q 0.31 deleterious_low_confidence(0.02) benign(0.402) TCGA-F1-6177-01 8 116599476 116599476 A G TRPS1 Missense_Mutation p.S818P 0.32 tolerated_low_confidence(0.1) possibly_damaging(0.854) TCGA-F1-6177-01 8 118165289 118165289 G A SLC30A8 Silent p.K126K 0.32 TCGA-F1-6177-01 8 120638944 120638944 G - ENPP2 Frame_Shift_Del p.W52Gfs*44 0.22 TCGA-F1-6177-01 8 121298186 121298186 A T COL14A1 Missense_Mutation p.I1352F 0.07 deleterious(0) benign(0.197) TCGA-F1-6177-01 8 134232918 134232918 C T WISP1 Silent p.D148D 0.30 TCGA-F1-6177-01 8 135622763 135622763 G A ZFAT Missense_Mutation p.A195V 0.25 tolerated(0.32) benign(0.003) TCGA-F1-6177-01 8 142228274 142228274 C - SLC45A4 Frame_Shift_Del p.E438Rfs*14 0.24 TCGA-F1-6177-01 8 142228560 142228560 G A SLC45A4 Silent p.D342D 0.29 TCGA-F1-6177-01 8 142446864 142446864 C T CTD-3064M3.7 RNA 0.32 TCGA-F1-6177-01 8 143746320 143746320 C T JRK RNA 0.39 TCGA-F1-6177-01 8 143747244 143747244 C T JRK RNA 0.33 TCGA-F1-6177-01 8 144124626 144124626 G A C8orf31 Missense_Mutation p.A45T 0.27 deleterious_low_confidence(0) possibly_damaging(0.695) TCGA-F1-6177-01 8 144652731 144652731 G C MROH6 Missense_Mutation p.L273V 0.31 tolerated(0.38) possibly_damaging(0.839) TCGA-F1-6177-01 8 144804425 144804425 G A MAPK15 3'UTR 0.32 TCGA-F1-6177-01 8 144893468 144893468 G A SCRIB Silent p.N318N 0.32 TCGA-F1-6177-01 8 144998018 144998018 G A PLEC Nonsense_Mutation p.R2164* 0.73 TCGA-F1-6177-01 8 145066726 145066726 C T GRINA Missense_Mutation p.R306C 0.35 deleterious(0.01) probably_damaging(0.964) TCGA-F1-6177-01 8 145109749 145109749 C - OPLAH Frame_Shift_Del p.G826Afs*7 0.16 TCGA-F1-6177-01 8 145152356 145152356 G A CYC1 3'UTR 0.33 TCGA-F1-6177-01 8 145234370 145234370 T C MROH1 Missense_Mutation p.Y61H 0.31 tolerated(1) benign(0.001) TCGA-F1-6177-01 8 146067177 146067178 - A ZNF7 Frame_Shift_Ins p.L232Vfs*3 0.28 TCGA-F1-6177-01 8 146076123 146076123 G A COMMD5 Missense_Mutation p.R201W 0.21 deleterious(0.02) probably_damaging(1) TCGA-F1-6177-01 8 21978590 21978590 C T HR Silent p.P785P 0.15 TCGA-F1-6177-01 8 22064891 22064891 G A BMP1 Missense_Mutation p.A813T 0.77 tolerated(0.51) benign(0.009) TCGA-F1-6177-01 8 23159604 23159604 C T LOXL2 Missense_Mutation p.R690H 0.81 deleterious(0) probably_damaging(0.992) TCGA-F1-6177-01 8 25224467 25224467 C T DOCK5 Missense_Mutation p.R1069C 0.77 deleterious(0.02) probably_damaging(0.987) TCGA-F1-6177-01 8 25226177 25226177 T C DOCK5 Missense_Mutation p.I1125T 0.78 deleterious(0.02) probably_damaging(0.917) TCGA-F1-6177-01 8 27145238 27145238 G A TRIM35 Silent p.G437G 0.85 TCGA-F1-6177-01 8 27880849 27880849 G - NUGGC Frame_Shift_Del p.T794Hfs*159 0.46 TCGA-F1-6177-01 8 27888776 27888776 T - NUGGC Frame_Shift_Del p.N631Ifs*3 0.72 TCGA-F1-6177-01 8 30924662 30924662 T C WRN Silent p.T206T 0.61 TCGA-F1-6177-01 8 37720397 37720397 T - RAB11FIP1 3'UTR 0.74 TCGA-F1-6177-01 8 38282215 38282215 G A FGFR1 Missense_Mutation p.R281W 0.70 deleterious(0) probably_damaging(1) TCGA-F1-6177-01 8 42939925 42939925 T C FNTA Silent p.H306H 0.88 TCGA-F1-6177-01 8 48744483 48744483 C T PRKDC Silent p.A2718A 0.26 TCGA-F1-6177-01 8 53049172 53049172 C T ST18 Missense_Mutation p.A760T 0.25 tolerated(0.07) possibly_damaging(0.858) TCGA-F1-6177-01 8 53852868 53852868 G A NPBWR1 Missense_Mutation p.R134H 0.32 tolerated(0.07) benign(0.185) TCGA-F1-6177-01 8 54791841 54791841 A G RGS20 Silent p.P63P 0.24 TCGA-F1-6177-01 8 55371702 55371702 A G SOX17 Missense_Mutation p.D131G 0.17 deleterious(0.04) probably_damaging(0.992) TCGA-F1-6177-01 8 6389908 6389908 T A ANGPT2 Missense_Mutation p.N130I 0.65 deleterious(0) benign(0.148) TCGA-F1-6177-01 8 64100299 64100299 G A YTHDF3 Missense_Mutation p.R576H 0.31 deleterious(0) benign(0.001) TCGA-F1-6177-01 8 68102923 68102923 G A CSPP1 Missense_Mutation p.V1082I 0.29 tolerated(0.31) benign(0.001) TCGA-F1-6177-01 8 68138270 68138270 A G ARFGEF1 Silent p.S1355S 0.26 TCGA-F1-6177-01 8 72755799 72755799 G A RP11-383H13.1 Missense_Mutation p.G55R 0.20 unknown(0) TCGA-F1-6177-01 8 75737491 75737491 G A PI15 Missense_Mutation p.A3T 0.29 tolerated_low_confidence(0.25) unknown(0) TCGA-F1-6177-01 8 75937828 75937828 G A CRISPLD1 Missense_Mutation p.R431H 0.29 tolerated(0.06) probably_damaging(0.986) TCGA-F1-6177-01 8 77616881 77616881 G A ZFHX4 Silent p.S186S 0.23 TCGA-F1-6177-01 8 77618388 77618388 G A ZFHX4 Missense_Mutation p.G689S 0.33 probably_damaging(0.931) TCGA-F1-6177-01 8 77775464 77775464 C A ZFHX4 Missense_Mutation p.P3172T 0.38 probably_damaging(0.996) TCGA-F1-6177-01 8 81577212 81577212 C T ZNF704 Silent p.P255P 0.33 TCGA-F1-6177-01 8 86386635 86386635 T - CA2 Frame_Shift_Del p.L147* 0.23 TCGA-F1-6177-01 8 88885905 88885905 A G DCAF4L2 Missense_Mutation p.Y99H 0.23 deleterious(0.01) benign(0.325) TCGA-F1-6177-01 8 95188798 95188798 T C CDH17 Missense_Mutation p.E132G 0.30 tolerated(0.3) benign(0.232) TCGA-F1-6177-01 8 95272569 95272569 G A GEM Missense_Mutation p.R55C 0.19 deleterious(0.01) possibly_damaging(0.858) TCGA-F1-6177-01 8 95556069 95556069 G A KIAA1429 Silent p.D55D 0.35 TCGA-F1-6177-01 8 96166569 96166569 A G PLEKHF2 Silent p.G99G 0.34 TCGA-F1-6177-01 8 99468194 99468194 C T STK3 Missense_Mutation p.R479Q 0.19 deleterious(0.05) probably_damaging(0.955) TCGA-F1-6177-01 9 101552652 101552652 A G ANKS6 Missense_Mutation p.I199T 0.55 tolerated(0.61) benign(0.007) TCGA-F1-6177-01 9 101706253 101706253 G A COL15A1 5'UTR 0.47 TCGA-F1-6177-01 9 102677512 102677512 T - STX17 5'UTR 0.30 TCGA-F1-6177-01 9 112705848 112705848 T - PALM2 3'Flank 0.40 TCGA-F1-6177-01 9 114449052 114449052 A - C9orf84 Frame_Shift_Del p.*1445E 0.18 TCGA-F1-6177-01 9 115806416 115806416 T - ZFP37 Frame_Shift_Del p.N161Ifs*24 0.43 TCGA-F1-6177-01 9 116171195 116171195 T - POLE3 Frame_Shift_Del p.T114Qfs*32 0.50 TCGA-F1-6177-01 9 117849113 117849113 G A TNC Silent p.C299C 0.44 TCGA-F1-6177-01 9 121929281 121929282 - T BRINP1 3'UTR 0.33 TCGA-F1-6177-01 9 123298694 123298694 G A CDK5RAP2 Silent p.H206H 0.40 TCGA-F1-6177-01 9 123593733 123593733 A G PSMD5 Missense_Mutation p.I146T 0.42 tolerated(0.18) probably_damaging(0.954) TCGA-F1-6177-01 9 124971944 124971944 G - LHX6 Frame_Shift_Del p.V370Sfs*164 0.24 TCGA-F1-6177-01 9 125391779 125391779 C T OR1B1 Silent p.P12P 0.38 TCGA-F1-6177-01 9 125551337 125551337 C T OR5C1 Silent p.S42S 0.38 TCGA-F1-6177-01 9 125617540 125617540 C T RC3H2 Missense_Mutation p.R913H 0.36 deleterious(0) probably_damaging(0.984) TCGA-F1-6177-01 9 125946468 125946468 G A STRBP 5'UTR 0.42 TCGA-F1-6177-01 9 12708067 12708068 - C TYRP1 Frame_Shift_Ins p.V447Sfs*19 0.30 TCGA-F1-6177-01 9 127549469 127549469 C T OLFML2A Silent p.N102N 0.44 TCGA-F1-6177-01 9 127911822 127911822 A - PPP6C 3'UTR 0.67 TCGA-F1-6177-01 9 128419995 128419995 G A MAPKAP1 Missense_Mutation p.R145C 0.14 deleterious(0.01) probably_damaging(0.964) TCGA-F1-6177-01 9 130236099 130236099 C - LRSAM1 Frame_Shift_Del p.P215Lfs*33 0.29 TCGA-F1-6177-01 9 130495627 130495627 G C TOR2A Intron 0.30 TCGA-F1-6177-01 9 130630187 130630187 T A AK1 3'UTR 0.35 TCGA-F1-6177-01 9 130653011 130653011 C T ST6GALNAC6 Silent p.A203A 0.42 TCGA-F1-6177-01 9 131019150 131019151 - T GOLGA2 3'UTR 0.43 TCGA-F1-6177-01 9 13112118 13112118 T C MPDZ Missense_Mutation p.I1848V 0.13 tolerated(0.07) benign(0.072) TCGA-F1-6177-01 9 13125277 13125277 T - MPDZ Frame_Shift_Del p.K1582Rfs*7 0.33 TCGA-F1-6177-01 9 131599998 131599998 A C CCBL1 Missense_Mutation p.L178R 0.49 deleterious(0) probably_damaging(0.922) TCGA-F1-6177-01 9 131745254 131745254 G A NUP188 Silent p.S581S 0.44 TCGA-F1-6177-01 9 131770914 131770914 C A SH3GLB2 3'UTR 0.58 TCGA-F1-6177-01 9 132980177 132980177 C T NCS1 Silent p.Y52Y 0.37 TCGA-F1-6177-01 9 134010375 134010375 A G NUP214 Missense_Mutation p.S308G 0.44 unknown(0) TCGA-F1-6177-01 9 135073571 135073571 C T NTNG2 Silent p.G144G 0.33 TCGA-F1-6177-01 9 135224793 135224793 G A SETX Missense_Mutation p.T8M 0.34 deleterious(0) probably_damaging(0.999) TCGA-F1-6177-01 9 136568075 136568075 T G SARDH Missense_Mutation p.D544A 0.48 tolerated(0.74) benign(0.002) TCGA-F1-6177-01 9 136594899 136594899 G A SARDH Silent p.I301I 0.51 TCGA-F1-6177-01 9 138379043 138379043 G - PPP1R26 Frame_Shift_Del p.V898Sfs*56 0.30 TCGA-F1-6177-01 9 138395799 138395799 C T MRPS2 Silent p.P237P 0.36 TCGA-F1-6177-01 9 138712718 138712718 G A CAMSAP1 Silent p.G1263G 0.45 TCGA-F1-6177-01 9 138903211 138903211 T C NACC2 3'UTR 0.27 TCGA-F1-6177-01 9 139272220 139272220 C - SNAPC4 Frame_Shift_Del p.Q1354Sfs*53 0.20 TCGA-F1-6177-01 9 139272275 139272275 C - SNAPC4 Frame_Shift_Del p.G1335Afs*72 0.38 TCGA-F1-6177-01 9 139358971 139358971 A G SEC16A Silent p.H1449H 0.40 TCGA-F1-6177-01 9 139740978 139740978 C T C9orf172 Silent p.D704D 0.45 TCGA-F1-6177-01 9 140137090 140137091 - G TUBB4B Frame_Shift_Ins p.T143Dfs*26 0.31 TCGA-F1-6177-01 9 14125655 14125655 C T NFIB Missense_Mutation p.G346R 0.45 tolerated(0.09) possibly_damaging(0.891) TCGA-F1-6177-01 9 14662273 14662273 C T ZDHHC21 Missense_Mutation p.R102H 0.49 deleterious(0) probably_damaging(0.999) TCGA-F1-6177-01 9 14776179 14776179 G A FREM1 Missense_Mutation p.R1489W 0.47 tolerated(0.12) benign(0.004) TCGA-F1-6177-01 9 14842482 14842482 G T FREM1 Missense_Mutation p.L524I 0.40 deleterious(0.02) probably_damaging(0.999) TCGA-F1-6177-01 9 17235698 17235698 C T CNTLN Missense_Mutation p.R193W 0.32 tolerated(0.05) benign(0.009) TCGA-F1-6177-01 9 19326059 19326059 C T DENND4C Intron 0.37 TCGA-F1-6177-01 9 2635519 2635519 G T VLDLR Missense_Mutation p.W50L 0.05 deleterious(0) probably_damaging(1) TCGA-F1-6177-01 9 2646515 2646515 C T VLDLR Nonsense_Mutation p.R556* 0.48 TCGA-F1-6177-01 9 27949660 27949660 T C LINGO2 Missense_Mutation p.E337G 0.42 deleterious(0) probably_damaging(0.999) TCGA-F1-6177-01 9 32633025 32633025 T - TAF1L Frame_Shift_Del p.A852Pfs*14 0.31 TCGA-F1-6177-01 9 33029981 33029981 T C DNAJA1 Missense_Mutation p.C137R 0.09 deleterious(0) probably_damaging(0.941) TCGA-F1-6177-01 9 33675365 33675365 A - PTENP1 RNA 0.32 TCGA-F1-6177-01 9 35386181 35386181 C A UNC13B Missense_Mutation p.P913H 0.31 deleterious(0) probably_damaging(0.999) TCGA-F1-6177-01 9 35547647 35547647 G A RUSC2 Missense_Mutation p.A377T 0.35 deleterious(0.01) probably_damaging(0.995) TCGA-F1-6177-01 9 35607366 35607366 G A TESK1 Missense_Mutation p.V194M 0.42 deleterious(0) probably_damaging(1) TCGA-F1-6177-01 9 35792488 35792488 C T NPR2 Missense_Mutation p.A28V 0.37 deleterious(0.05) benign(0.059) TCGA-F1-6177-01 9 35846378 35846378 G A TMEM8B Missense_Mutation p.R166Q 0.57 tolerated(0.33) benign(0.001) TCGA-F1-6177-01 9 37354736 37354736 G A ZCCHC7 Silent p.P371P 0.44 TCGA-F1-6177-01 9 37442433 37442433 C T ZBTB5 Missense_Mutation p.R39H 0.39 deleterious(0) probably_damaging(0.999) TCGA-F1-6177-01 9 74319518 74319518 A G TMEM2 Missense_Mutation p.F1063L 0.13 deleterious(0) probably_damaging(0.976) TCGA-F1-6177-01 9 88248183 88248183 C T AGTPBP1 Missense_Mutation p.G430D 0.37 tolerated(0.67) benign(0.002) TCGA-F1-6177-01 9 95076713 95076713 G A NOL8 Missense_Mutation p.R732W 0.39 deleterious(0.01) benign(0) TCGA-F1-6177-01 9 95887239 95887239 G A NINJ1 Missense_Mutation p.T137M 0.39 deleterious(0) probably_damaging(0.996) TCGA-F1-6177-01 9 96009888 96009888 G A WNK2 Missense_Mutation p.V536M 0.21 unknown(0) TCGA-F1-6177-01 9 96024184 96024184 C T WNK2 Missense_Mutation p.P1052L 0.44 unknown(0) TCGA-F1-6177-01 9 96437282 96437282 C T PHF2 Silent p.D900D 0.45 TCGA-F1-6177-01 9 96864016 96864017 - T PTPDC1 Frame_Shift_Ins p.L728Ffs*37 0.42 TCGA-F1-6177-01 9 97203361 97203361 C T HIATL1 Nonsense_Mutation p.R164* 0.54 TCGA-F1-6177-01 9 98241348 98241348 T C PTCH1 Silent p.S383S 0.42 TCGA-F1-6177-01 9 99064279 99064279 C T HSD17B3 Nonsense_Mutation p.W36* 0.43 TCGA-F1-6177-01 9 99521474 99521474 A G ZNF510 Silent p.C546C 0.40 TCGA-F1-6177-01 X 100496692 100496692 C T DRP2 Missense_Mutation p.R199C 0.94 deleterious(0) possibly_damaging(0.847) TCGA-F1-6177-01 X 101572352 101572352 C T NXF2 Nonsense_Mutation p.R84* 0.36 TCGA-F1-6177-01 X 109937472 109937472 G A CHRDL1 Missense_Mutation p.R233W 0.87 deleterious(0.02) probably_damaging(0.999) TCGA-F1-6177-01 X 134495119 134495119 T - ZNF449 3'UTR 0.72 TCGA-F1-6177-01 X 134680317 134680317 T - DDX26B Frame_Shift_Del p.L120* 0.33 TCGA-F1-6177-01 X 135741286 135741286 A C CD40LG Missense_Mutation p.Q166H 0.86 deleterious(0.05) benign(0.335) TCGA-F1-6177-01 X 136113077 136113077 T C GPR101 Missense_Mutation p.K253E 0.91 tolerated(0.41) benign(0.013) TCGA-F1-6177-01 X 140983317 140983317 G - MAGEC3 Frame_Shift_Del p.A366Rfs*51 0.92 TCGA-F1-6177-01 X 148037756 148037756 C A AFF2 Silent p.T727T 0.86 TCGA-F1-6177-01 X 150817164 150817164 C T PASD1 Missense_Mutation p.A236V 0.86 tolerated(0.07) possibly_damaging(0.451) TCGA-F1-6177-01 X 151900304 151900304 A G MAGEA12 Missense_Mutation p.V166A 0.79 deleterious(0.01) possibly_damaging(0.843) TCGA-F1-6177-01 X 153175645 153175645 C T ARHGAP4 Silent p.P752P 0.94 TCGA-F1-6177-01 X 153421852 153421852 G A OPN1LW Silent p.A276A 0.81 TCGA-F1-6177-01 X 15349630 15349630 G A PIGA Silent p.H141H 0.86 TCGA-F1-6177-01 X 153688564 153688565 - G PLXNA3 Frame_Shift_Ins p.A17Gfs*39 0.72 TCGA-F1-6177-01 X 153762274 153762274 T C G6PD Missense_Mutation p.Y279C 0.10 deleterious(0) probably_damaging(0.999) TCGA-F1-6177-01 X 155255058 155255058 C - WASH6P RNA 0.15 TCGA-F1-6177-01 X 1714399 1714399 G A AKAP17A Silent p.A295A 0.42 TCGA-F1-6177-01 X 18912415 18912415 C T PHKA2 Silent p.T1148T 0.70 TCGA-F1-6177-01 X 30260314 30260314 A G MAGEB4 Missense_Mutation p.Q21R 0.17 deleterious(0) possibly_damaging(0.544) TCGA-F1-6177-01 X 306382 306382 G A PPP2R3B Missense_Mutation p.A302V 0.40 tolerated(0.07) benign(0.053) TCGA-F1-6177-01 X 31090062 31090062 G A FTHL17 Silent p.T3T 0.82 TCGA-F1-6177-01 X 33229458 33229458 A - DMD 5'UTR 0.83 TCGA-F1-6177-01 X 46884163 46884163 C T JADE3 Nonsense_Mutation p.R108* 0.93 TCGA-F1-6177-01 X 47486543 47486543 G T CFP Missense_Mutation p.P255T 0.69 tolerated(0.08) benign(0.293) TCGA-F1-6177-01 X 48820066 48820066 G A KCND1 Missense_Mutation p.R574C 1.00 deleterious_low_confidence(0) possibly_damaging(0.847) TCGA-F1-6177-01 X 70321551 70321551 A G FOXO4 Missense_Mutation p.M491V 0.84 deleterious(0) benign(0.113) TCGA-F1-6177-01 X 70341606 70341606 T C MED12 Silent p.S347S 0.80 TCGA-F1-6177-01 X 72434173 72434173 G A NAP1L2 Silent p.A52A 0.81 TCGA-F1-6177-01 X 77253979 77253979 G A ATP7A Silent p.T447T 0.83 TCGA-F1-6177-01 X 82764008 82764008 G A POU3F4 Missense_Mutation p.V226M 0.83 tolerated(0.1) probably_damaging(0.999) TCGA-F1-6177-01 X 86772852 86772852 G A KLHL4 5'UTR 0.90 TCGA-F1-6177-01 X 89177131 89177131 A - TGIF2LX Frame_Shift_Del p.D18Tfs*169 0.16 TCGA-F1-6177-01 X 89177144 89177144 G A TGIF2LX Silent p.P20P 0.65 TCGA-F1-6177-01 Y 16733974 16733974 T A NLGN4Y 5'UTR 0.85 TCGA-F1-6874-01 10 101292843 101292843 C G NKX2-3 5'UTR 0.27 TCGA-F1-6874-01 10 101439208 101439208 A - ENTPD7 Frame_Shift_Del p.I130Sfs*23 0.30 TCGA-F1-6874-01 10 102777873 102777873 C T PDZD7 Missense_Mutation p.R502H 0.30 tolerated_low_confidence(0.35) benign(0.002) TCGA-F1-6874-01 10 104235578 104235578 G A TMEM180 Missense_Mutation p.R464H 0.12 deleterious(0) benign(0.32) TCGA-F1-6874-01 10 104248876 104248876 C T ACTR1A Missense_Mutation p.V45I 0.31 tolerated(0.2) benign(0.005) TCGA-F1-6874-01 10 105209699 105209699 G A CALHM2 5'UTR 0.40 TCGA-F1-6874-01 10 1058424 1058426 AAG - GTPBP4 In_Frame_Del p.E458del 0.40 TCGA-F1-6874-01 10 11504926 11504926 G - USP6NL Frame_Shift_Del p.R685Gfs*31 0.29 TCGA-F1-6874-01 10 115917403 115917403 G A C10orf118 Silent p.F223F 0.29 TCGA-F1-6874-01 10 116698094 116698094 G A TRUB1 Missense_Mutation p.V28I 0.25 deleterious_low_confidence(0.01) benign(0.097) TCGA-F1-6874-01 10 1279636 1279636 G A ADARB2 Silent p.L505L 0.21 TCGA-F1-6874-01 10 129900871 129900871 T C MKI67 Missense_Mutation p.K3078R 0.04 tolerated(0.51) benign(0.056) TCGA-F1-6874-01 10 129904162 129904162 C T MKI67 Missense_Mutation p.C1981Y 0.28 tolerated(0.51) possibly_damaging(0.615) TCGA-F1-6874-01 10 129907312 129907312 G A MKI67 Missense_Mutation p.T931I 0.25 deleterious(0.04) possibly_damaging(0.527) TCGA-F1-6874-01 10 134018422 134018423 CT - DPYSL4 Frame_Shift_Del p.S572Lfs*28 0.15 TCGA-F1-6874-01 10 135211971 135211971 A - MTG1 Frame_Shift_Del p.N107Mfs*8 0.21 TCGA-F1-6874-01 10 135352460 135352460 C T CYP2E1 Missense_Mutation p.R492C 0.08 deleterious(0) probably_damaging(1) TCGA-F1-6874-01 10 14961737 14961737 C A DCLRE1C Nonsense_Mutation p.E386* 0.25 TCGA-F1-6874-01 10 16967768 16967768 C T CUBN Missense_Mutation p.G2093S 0.18 deleterious(0) probably_damaging(1) TCGA-F1-6874-01 10 22208767 22208767 T - DNAJC1 Frame_Shift_Del p.N210Mfs*5 0.22 TCGA-F1-6874-01 10 23287247 23287247 G A ARMC3 Missense_Mutation p.R449H 0.35 tolerated(0.37) benign(0.001) TCGA-F1-6874-01 10 27403517 27403517 C T YME1L1 Missense_Mutation p.S704N 0.21 tolerated(0.31) benign(0.014) TCGA-F1-6874-01 10 33200585 33200585 G A ITGB1 Silent p.C574C 0.30 TCGA-F1-6874-01 10 3823983 3823983 G A KLF6 Missense_Mutation p.R176C 0.27 deleterious(0.04) probably_damaging(0.988) TCGA-F1-6874-01 10 43651044 43651044 A G CSGALNACT2 Silent p.E149E 0.14 TCGA-F1-6874-01 10 46121925 46121925 A G ZFAND4 Missense_Mutation p.L449P 0.30 tolerated(0.06) probably_damaging(0.935) TCGA-F1-6874-01 10 50227718 50227718 G T VSTM4 Missense_Mutation p.L314I 0.25 deleterious(0.01) probably_damaging(0.994) TCGA-F1-6874-01 10 50740632 50740632 C T ERCC6-PGBD3 Missense_Mutation p.V127I 0.27 deleterious_low_confidence(0.02) benign(0.02) TCGA-F1-6874-01 10 5496975 5496975 A G NET1 Missense_Mutation p.Y364C 0.27 deleterious(0.03) probably_damaging(0.998) TCGA-F1-6874-01 10 55568837 55568837 T - PCDH15 Frame_Shift_Del p.N592Tfs*157 0.12 TCGA-F1-6874-01 10 55587205 55587205 G A PCDH15 Missense_Mutation p.P1439S 0.24 deleterious_low_confidence(0.02) possibly_damaging(0.507) TCGA-F1-6874-01 10 63851103 63851103 C T ARID5B Silent p.T627T 0.27 TCGA-F1-6874-01 10 68687773 68687773 G A LRRTM3 Missense_Mutation p.E367K 0.24 tolerated(0.77) benign(0.191) TCGA-F1-6874-01 10 72299504 72299505 - C PALD1 Frame_Shift_Ins p.R634Pfs*6 0.33 TCGA-F1-6874-01 10 73485183 73485183 G T CDH23 Missense_Mutation p.G1167V 0.16 tolerated(0.06) probably_damaging(0.992) TCGA-F1-6874-01 10 75143062 75143062 G A ANXA7 Silent p.C285C 0.24 TCGA-F1-6874-01 10 75406371 75406371 G T SYNPO2L 3'UTR 0.32 TCGA-F1-6874-01 10 75451817 75451817 C A AGAP5 Missense_Mutation p.S127I 0.09 deleterious_low_confidence(0) benign(0.169) TCGA-F1-6874-01 10 75673437 75673438 - G PLAU Frame_Shift_Ins p.S204Lfs*25 0.26 TCGA-F1-6874-01 10 7618918 7618918 G - ITIH5 Frame_Shift_Del p.S493Afs*49 0.20 TCGA-F1-6874-01 10 76854349 76854349 T C DUSP13 3'Flank 0.43 TCGA-F1-6874-01 10 7708805 7708805 C T ITIH5 Silent p.S17S 0.07 TCGA-F1-6874-01 10 85991648 85991648 G T LRIT1 3'UTR 0.33 TCGA-F1-6874-01 10 87487639 87487639 G A GRID1 Silent p.N502N 0.36 TCGA-F1-6874-01 10 88768309 88768309 C T RP11-96C23.10 3'Flank 0.02 TCGA-F1-6874-01 10 890939 890939 T - LARP4B Frame_Shift_Del p.T163Hfs*47 0.25 TCGA-F1-6874-01 10 90682146 90682146 A - STAMBPL1 Frame_Shift_Del p.K405Rfs*21 0.27 TCGA-F1-6874-01 10 94828412 94828412 C - CYP26C1 Frame_Shift_Del p.L511Sfs*? 0.23 TCGA-F1-6874-01 10 95347049 95347049 C T FFAR4 Nonsense_Mutation p.Q273* 0.29 TCGA-F1-6874-01 10 95422382 95422382 T C PDE6C Silent p.V783V 0.28 TCGA-F1-6874-01 10 95987095 95987095 G A PLCE1 Silent p.T614T 0.23 TCGA-F1-6874-01 11 108031933 108031933 G A NPAT Missense_Mutation p.R1294C 0.08 tolerated(0.06) probably_damaging(0.999) TCGA-F1-6874-01 11 108042926 108042927 - T NPAT Frame_Shift_Ins p.G929Rfs*32 0.22 TCGA-F1-6874-01 11 108170454 108170454 C T ATM Silent p.S1673S 0.23 TCGA-F1-6874-01 11 113281585 113281585 C G DRD2 Missense_Mutation p.C399S 0.36 deleterious(0) probably_damaging(0.974) TCGA-F1-6874-01 11 114401164 114401164 G A NXPE1 Missense_Mutation p.A47V 0.37 tolerated(1) benign(0.002) TCGA-F1-6874-01 11 118253491 118253491 G C UBE4A Missense_Mutation p.G740R 0.33 deleterious(0) probably_damaging(0.998) TCGA-F1-6874-01 11 118374689 118374689 A G KMT2A Silent p.S2694S 0.28 TCGA-F1-6874-01 11 118773197 118773197 G A BCL9L Nonsense_Mutation p.R419* 0.35 TCGA-F1-6874-01 11 119063872 119063872 C T CCDC153 Missense_Mutation p.R113Q 0.28 tolerated(0.77) benign(0.034) TCGA-F1-6874-01 11 119210189 119210190 - C C1QTNF5 Frame_Shift_Ins p.A195Gfs*8 0.34 TCGA-F1-6874-01 11 119243680 119243681 - G USP2 Frame_Shift_Ins p.M171Hfs*23 0.25 TCGA-F1-6874-01 11 120924331 120924331 G A TBCEL Silent p.S115S 0.17 TCGA-F1-6874-01 11 120976630 120976630 C T TECTA Missense_Mutation p.A52V 0.24 tolerated(0.54) benign(0.053) TCGA-F1-6874-01 11 12315442 12315442 A - MICALCL Frame_Shift_Del p.S158Vfs*15 0.23 TCGA-F1-6874-01 11 124253126 124253126 G A OR8B2 Silent p.T38T 0.28 TCGA-F1-6874-01 11 124845056 124845056 A G CCDC15 Missense_Mutation p.K194R 0.20 tolerated(0.33) benign(0.064) TCGA-F1-6874-01 11 128840436 128840436 C T ARHGAP32 Missense_Mutation p.A1544T 0.25 tolerated_low_confidence(0.56) benign(0.003) TCGA-F1-6874-01 11 128856447 128856447 A T ARHGAP32 Missense_Mutation p.L458H 0.26 deleterious(0) probably_damaging(0.998) TCGA-F1-6874-01 11 129800918 129800918 C T PRDM10 Missense_Mutation p.R508H 0.37 deleterious(0.03) probably_damaging(0.996) TCGA-F1-6874-01 11 134121096 134121099 CAAA - THYN1 Frame_Shift_Del p.C49* 0.28 TCGA-F1-6874-01 11 134257522 134257522 A G B3GAT1 Missense_Mutation p.V11A 0.21 deleterious_low_confidence(0) benign(0.123) TCGA-F1-6874-01 11 1780837 1780837 C T CTSD Silent p.T87T 0.30 TCGA-F1-6874-01 11 18313386 18313387 - T HPS5 Frame_Shift_Ins p.I683Nfs*4 0.27 TCGA-F1-6874-01 11 18741263 18741263 C A IGSF22 Missense_Mutation p.E232D 0.25 deleterious(0.02) benign(0.438) TCGA-F1-6874-01 11 20515777 20515777 A - PRMT3 Frame_Shift_Del p.K489Nfs*11 0.25 TCGA-F1-6874-01 11 2426142 2426142 C T TRPM5 3'UTR 0.09 TCGA-F1-6874-01 11 299343 299343 A G IFITM5 Missense_Mutation p.C50R 0.32 deleterious(0) probably_damaging(0.995) TCGA-F1-6874-01 11 3050703 3050703 C T CARS Intron 0.27 TCGA-F1-6874-01 11 3122896 3122896 C T OSBPL5 Missense_Mutation p.V487I 0.15 tolerated(0.15) benign(0.179) TCGA-F1-6874-01 11 32452116 32452116 G T WT1 Intron 0.22 TCGA-F1-6874-01 11 3249856 3249856 G A MRGPRE Silent p.F57F 0.35 TCGA-F1-6874-01 11 32955500 32955500 T C QSER1 Missense_Mutation p.M770T 0.10 deleterious(0.01) benign(0.103) TCGA-F1-6874-01 11 34982048 34982048 G T PDHX Silent p.R208R 0.12 TCGA-F1-6874-01 11 3681308 3681308 C T ART1 Missense_Mutation p.R187W 0.34 deleterious(0.02) benign(0.022) TCGA-F1-6874-01 11 3697574 3697574 C T NUP98 Missense_Mutation p.V1740M 0.30 tolerated(0.09) probably_damaging(0.999) TCGA-F1-6874-01 11 3797186 3797187 - A NUP98 Frame_Shift_Ins p.G141Wfs*12 0.23 TCGA-F1-6874-01 11 44073203 44073203 G A ACCSL Missense_Mutation p.V236M 0.23 deleterious(0) probably_damaging(1) TCGA-F1-6874-01 11 44098861 44098861 G A ACCS Missense_Mutation p.A197T 0.25 deleterious(0.03) possibly_damaging(0.531) TCGA-F1-6874-01 11 45671407 45671407 G A CHST1 Missense_Mutation p.T356M 0.20 deleterious(0.02) probably_damaging(0.915) TCGA-F1-6874-01 11 46439470 46439470 G A AMBRA1 Nonsense_Mutation p.R947* 0.32 TCGA-F1-6874-01 11 46564257 46564257 G - AMBRA1 Frame_Shift_Del p.P347Rfs*9 0.18 TCGA-F1-6874-01 11 46726189 46726189 T A ZNF408 Missense_Mutation p.S313R 0.29 tolerated(0.07) benign(0.235) TCGA-F1-6874-01 11 4842865 4842865 G T OR51F2 Missense_Mutation p.D84Y 0.24 deleterious(0) probably_damaging(0.999) TCGA-F1-6874-01 11 49179535 49179535 T - FOLH1 Frame_Shift_Del p.S501Vfs*12 0.22 TCGA-F1-6874-01 11 49830090 49830090 A G RP11-707M1.1 Intron 0.17 TCGA-F1-6874-01 11 49830105 49830105 G A RP11-707M1.1 RNA 0.17 TCGA-F1-6874-01 11 557678 557678 G A C11orf35 Intron 0.33 TCGA-F1-6874-01 11 55904812 55904812 T A OR8J3 Missense_Mutation p.N128I 0.09 deleterious(0.01) benign(0.043) TCGA-F1-6874-01 11 56057709 56057710 - A OR8H1 Frame_Shift_Ins p.Y277Lfs*14 0.26 TCGA-F1-6874-01 11 57885993 57885993 G T OR9I1 Silent p.L308L 0.05 TCGA-F1-6874-01 11 61017238 61017238 G A PGA5 Missense_Mutation p.A291T 0.12 tolerated(0.59) benign(0.028) TCGA-F1-6874-01 11 61404831 61404831 C T RPLP0P2 RNA 0.33 TCGA-F1-6874-01 11 61730441 61730441 C A BEST1 Silent p.P545P 0.36 TCGA-F1-6874-01 11 61897832 61897832 G A INCENP Missense_Mutation p.R278Q 0.26 tolerated(0.86) unknown(0) TCGA-F1-6874-01 11 62361349 62361349 A T MTA2 Nonstop_Mutation p.*669Rext*85 0.15 TCGA-F1-6874-01 11 62457819 62457820 GA - BSCL2 3'UTR 0.16 TCGA-F1-6874-01 11 62569485 62569485 C T NXF1 Missense_Mutation p.V163I 0.23 tolerated(0.15) benign(0.415) TCGA-F1-6874-01 11 63672464 63672464 G - MARK2 Frame_Shift_Del p.A630Pfs*27 0.21 TCGA-F1-6874-01 11 6432180 6432180 C T APBB1 Missense_Mutation p.R133Q 0.29 tolerated(0.62) benign(0.002) TCGA-F1-6874-01 11 64534407 64534407 C T SF1 Missense_Mutation p.S641N 0.28 tolerated_low_confidence(0.11) unknown(0) TCGA-F1-6874-01 11 64595039 64595039 G A CDC42BPG Silent p.T1370T 0.24 TCGA-F1-6874-01 11 64597712 64597712 C T CDC42BPG Silent p.A1107A 0.33 TCGA-F1-6874-01 11 64878804 64878804 G A VPS51 Silent p.S698S 0.43 TCGA-F1-6874-01 11 65046287 65046287 C T POLA2 Missense_Mutation p.S183F 0.27 deleterious(0.01) possibly_damaging(0.889) TCGA-F1-6874-01 11 65269498 65269498 T - MALAT1 RNA 0.12 TCGA-F1-6874-01 11 65273849 65273849 T - MALAT1 RNA 0.21 TCGA-F1-6874-01 11 65545838 65545838 G A AP5B1 Missense_Mutation p.A709V 0.11 tolerated(0.11) benign(0.028) TCGA-F1-6874-01 11 65792903 65792903 G A CATSPER1 Silent p.G316G 0.16 TCGA-F1-6874-01 11 66367082 66367082 G A CCS Missense_Mutation p.G135R 0.36 deleterious(0) probably_damaging(1) TCGA-F1-6874-01 11 66411375 66411375 A T RBM14-RBM4 Silent p.A264A 0.26 TCGA-F1-6874-01 11 66627389 66627389 C G LRFN4 Missense_Mutation p.A544G 0.24 tolerated(0.36) benign(0.01) TCGA-F1-6874-01 11 67402372 67402373 - G TBX10 Frame_Shift_Ins p.F98Lfs*72 0.31 TCGA-F1-6874-01 11 70338504 70338504 G A SHANK2 Missense_Mutation p.P793L 0.27 tolerated(0.22) benign(0.223) TCGA-F1-6874-01 11 7064936 7064936 T C NLRP14 Missense_Mutation p.L560S 0.30 deleterious(0.02) benign(0.017) TCGA-F1-6874-01 11 71208564 71208564 C G NADSYN1 Silent p.V600V 0.05 TCGA-F1-6874-01 11 76750655 76750655 C T B3GNT6 Silent p.G20G 0.30 TCGA-F1-6874-01 11 7689748 7689748 T - CYB5R2 Frame_Shift_Del p.T145Hfs*8 0.18 TCGA-F1-6874-01 11 77388037 77388037 G A RSF1 Silent p.G1047G 0.25 TCGA-F1-6874-01 11 8161631 8161631 C A RIC3 Missense_Mutation p.K78N 0.23 deleterious(0) probably_damaging(1) TCGA-F1-6874-01 11 82549488 82549488 G T PRCP Silent p.S426S 0.15 TCGA-F1-6874-01 11 82643360 82643360 G A C11orf82 Missense_Mutation p.S327N 0.35 tolerated(0.18) benign(0.025) TCGA-F1-6874-01 11 82693135 82693135 G A RAB30 3'UTR 0.25 TCGA-F1-6874-01 11 89939416 89939416 C A CHORDC1 Nonsense_Mutation p.E173* 0.32 TCGA-F1-6874-01 11 89951311 89951311 C T CHORDC1 Missense_Mutation p.A36T 0.16 deleterious(0) probably_damaging(0.967) TCGA-F1-6874-01 11 94533230 94533230 G - AMOTL1 Frame_Shift_Del p.S295Pfs*26 0.28 TCGA-F1-6874-01 11 95552045 95552045 C T CEP57 Missense_Mutation p.R226C 0.09 deleterious(0.02) probably_damaging(0.999) TCGA-F1-6874-01 12 100550442 100550442 A - AC010203.1 3'Flank 0.14 TCGA-F1-6874-01 12 100613799 100613799 T - ACTR6 Frame_Shift_Del p.F314Lfs*6 0.28 TCGA-F1-6874-01 12 101876581 101876581 G A SPIC Silent p.A74A 0.26 TCGA-F1-6874-01 12 103271264 103271264 T G PAH Silent p.G139G 0.26 TCGA-F1-6874-01 12 109717585 109717585 G A FOXN4 Missense_Mutation p.T482M 0.23 deleterious(0) probably_damaging(0.996) TCGA-F1-6874-01 12 11061808 11061808 G A TAS2R13 Silent p.I30I 0.16 TCGA-F1-6874-01 12 111890566 111890566 G T ATXN2 3'UTR 0.26 TCGA-F1-6874-01 12 116404042 116404042 C T MED13L Missense_Mutation p.G2078S 0.28 tolerated(0.17) possibly_damaging(0.651) TCGA-F1-6874-01 12 117977605 117977605 G - KSR2 Frame_Shift_Del p.L536Sfs*61 0.21 TCGA-F1-6874-01 12 118517177 118517177 G A VSIG10 Missense_Mutation p.S300L 0.28 tolerated(0.34) benign(0.009) TCGA-F1-6874-01 12 119563203 119563203 G A SRRM4 Missense_Mutation p.R178Q 0.16 tolerated_low_confidence(0.06) unknown(0) TCGA-F1-6874-01 12 119968783 119968783 G A CCDC60 Missense_Mutation p.R489Q 0.29 deleterious(0) probably_damaging(1) TCGA-F1-6874-01 12 120135487 120135487 G A CIT Silent p.H1953H 0.29 TCGA-F1-6874-01 12 120172001 120172001 C T CIT Silent p.L1106L 0.28 TCGA-F1-6874-01 12 120518704 120518704 G A CCDC64 Missense_Mutation p.S441N 0.40 tolerated(0.15) benign(0.019) TCGA-F1-6874-01 12 121476748 121476748 G A OASL Silent p.S9S 0.22 TCGA-F1-6874-01 12 121891034 121891034 G A KDM2B Silent p.C616C 0.28 TCGA-F1-6874-01 12 122091114 122091114 G A MORN3 Missense_Mutation p.A172V 0.30 tolerated(0.05) benign(0.028) TCGA-F1-6874-01 12 12247740 12247740 T C BCL2L14 Missense_Mutation p.L274P 0.33 deleterious(0) probably_damaging(0.999) TCGA-F1-6874-01 12 123285827 123285827 G T CCDC62 Missense_Mutation p.E378D 0.13 tolerated(0.05) benign(0.032) TCGA-F1-6874-01 12 124103353 124103353 G A DDX55 Silent p.K434K 0.06 TCGA-F1-6874-01 12 124298123 124298123 C T DNAH10 Missense_Mutation p.S1068L 0.26 benign(0.01) TCGA-F1-6874-01 12 130184678 130184678 G A TMEM132D Silent p.S215S 0.22 TCGA-F1-6874-01 12 130884240 130884240 C T RIMBP2 Missense_Mutation p.R1039H 0.26 deleterious(0.04) benign(0.022) TCGA-F1-6874-01 12 13367686 13367686 G T EMP1 3'UTR 0.14 TCGA-F1-6874-01 12 19522684 19522684 C T PLEKHA5 Missense_Mutation p.P1271L 0.28 deleterious(0) possibly_damaging(0.716) TCGA-F1-6874-01 12 2024025 2024025 G A CACNA2D4 Nonsense_Mutation p.Q102* 0.17 TCGA-F1-6874-01 12 22213859 22213859 A G CMAS Missense_Mutation p.R263G 0.34 deleterious(0.01) possibly_damaging(0.684) TCGA-F1-6874-01 12 26568291 26568292 - A ITPR2 Frame_Shift_Ins p.L2417Ffs*4 0.36 TCGA-F1-6874-01 12 27850003 27850003 G T REP15 Nonsense_Mutation p.G170* 0.10 TCGA-F1-6874-01 12 2943970 2943970 A G NRIP2 Silent p.D60D 0.27 TCGA-F1-6874-01 12 29462162 29462162 C T FAR2 Missense_Mutation p.A256V 0.23 deleterious(0.02) benign(0.04) TCGA-F1-6874-01 12 33031261 33031261 G A PKP2 Missense_Mutation p.R185W 0.06 deleterious(0) probably_damaging(0.983) TCGA-F1-6874-01 12 42481629 42481629 T - GXYLT1 Frame_Shift_Del p.S428Vfs*2 0.20 TCGA-F1-6874-01 12 4722772 4722772 C T DYRK4 Silent p.H472H 0.39 TCGA-F1-6874-01 12 47629304 47629304 T C PCED1B Missense_Mutation p.V153A 0.19 tolerated(0.12) benign(0.191) TCGA-F1-6874-01 12 48380149 48380149 G A COL2A1 Silent p.G499G 0.33 TCGA-F1-6874-01 12 48723477 48723477 G A H1FNT Missense_Mutation p.A135T 0.36 tolerated(0.12) probably_damaging(0.913) TCGA-F1-6874-01 12 49723227 49723227 C T TROAP Missense_Mutation p.A385V 0.17 tolerated(0.13) benign(0.133) TCGA-F1-6874-01 12 49938006 49938006 C T KCNH3 Missense_Mutation p.R344C 0.58 deleterious(0) probably_damaging(1) TCGA-F1-6874-01 12 49993929 49993931 CTC - FAM186B In_Frame_Del p.E498del 0.21 TCGA-F1-6874-01 12 50025258 50025258 C - PRPF40B Frame_Shift_Del p.M56Cfs*29 0.26 TCGA-F1-6874-01 12 5022052 5022052 A - KCNA1 3'UTR 0.23 TCGA-F1-6874-01 12 52774246 52774246 G A KRT84 Missense_Mutation p.A442V 0.19 deleterious(0) probably_damaging(0.999) TCGA-F1-6874-01 12 53585371 53585371 C T ITGB7 Missense_Mutation p.R789H 0.18 tolerated(0.21) benign(0.007) TCGA-F1-6874-01 12 56031570 56031570 A G OR10P1 Missense_Mutation p.R299G 0.34 tolerated(0.09) benign(0.019) TCGA-F1-6874-01 12 56088256 56088256 C T ITGA7 Silent p.T780T 0.38 TCGA-F1-6874-01 12 56639211 56639211 G A ANKRD52 Missense_Mutation p.A785V 0.29 tolerated(0.33) benign(0.017) TCGA-F1-6874-01 12 56720627 56720627 C T PAN2 Missense_Mutation p.A346T 0.19 deleterious(0.01) benign(0.219) TCGA-F1-6874-01 12 57872323 57872324 TG - ARHGAP9 Frame_Shift_Del p.T178Sfs*15 0.28 TCGA-F1-6874-01 12 57921401 57921401 C - MBD6 Frame_Shift_Del p.Q734Nfs*18 0.24 TCGA-F1-6874-01 12 58240195 58240195 G A CTDSP2 Silent p.T8T 0.26 TCGA-F1-6874-01 12 63543831 63543831 C T AVPR1A Silent p.A262A 0.21 TCGA-F1-6874-01 12 65130789 65130789 T G GNS Missense_Mutation p.S365R 0.32 tolerated(0.44) benign(0.024) TCGA-F1-6874-01 12 6686958 6686958 C A CHD4 Missense_Mutation p.R1785M 0.35 deleterious(0) probably_damaging(0.996) TCGA-F1-6874-01 12 6708947 6708947 G - CHD4 Frame_Shift_Del p.R492Vfs*7 0.19 TCGA-F1-6874-01 12 68720804 68720804 A G MDM1 Intron 0.33 TCGA-F1-6874-01 12 6968673 6968673 G A USP5 Silent p.P366P 0.26 TCGA-F1-6874-01 12 7092599 7092600 - A LPCAT3 Frame_Shift_Ins p.N85* 0.24 TCGA-F1-6874-01 12 71977919 71977920 CT - LGR5 Frame_Shift_Del p.C712Pfs*87 0.25 TCGA-F1-6874-01 12 79986276 79986276 A G PAWR 3'UTR 0.75 TCGA-F1-6874-01 12 88524079 88524080 TT - CEP290 Frame_Shift_Del p.N212Lfs*2 0.21 TCGA-F1-6874-01 12 9251353 9251353 C A A2M Splice_Site p.X568_splice 0.40 TCGA-F1-6874-01 12 94725476 94725477 - T CCDC41 Frame_Shift_Ins p.R570Efs*6 0.29 TCGA-F1-6874-01 13 107211856 107211856 C T ARGLU1 Missense_Mutation p.R166H 0.29 tolerated(0.25) possibly_damaging(0.715) TCGA-F1-6874-01 13 113771897 113771897 G A F7 Silent p.L264L 0.19 TCGA-F1-6874-01 13 114107633 114107633 G T ADPRHL1 Silent p.S40S 0.05 TCGA-F1-6874-01 13 25264573 25264573 C A ATP12A Missense_Mutation p.P215H 0.28 deleterious(0) probably_damaging(1) TCGA-F1-6874-01 13 30782714 30782714 T G KATNAL1 Missense_Mutation p.K479T 0.05 deleterious(0) probably_damaging(0.991) TCGA-F1-6874-01 13 45533698 45533698 C A NUFIP1 Missense_Mutation p.G280V 0.25 deleterious(0) probably_damaging(0.999) TCGA-F1-6874-01 13 46288456 46288456 C T SPERT Silent p.Y432Y 0.25 TCGA-F1-6874-01 13 52515271 52515271 C T ATP7B Missense_Mutation p.A1168T 0.22 tolerated(0.08) benign(0.077) TCGA-F1-6874-01 13 53418722 53418722 C T PCDH8 Silent p.P1062P 0.26 TCGA-F1-6874-01 13 53419757 53419757 G A PCDH8 Missense_Mutation p.A881V 0.24 tolerated(0.11) benign(0.004) TCGA-F1-6874-01 13 73335641 73335641 C T DIS3 Missense_Mutation p.G844R 0.32 tolerated(0.17) possibly_damaging(0.842) TCGA-F1-6874-01 13 76100599 76100599 A T COMMD6 3'UTR 0.43 TCGA-F1-6874-01 13 77570161 77570161 C T CLN5 Missense_Mutation p.A204V 0.10 deleterious(0.02) possibly_damaging(0.546) TCGA-F1-6874-01 14 100615695 100615695 G T DEGS2 Silent p.P145P 0.29 TCGA-F1-6874-01 14 102026711 102026711 C T DIO3 5'Flank 0.30 TCGA-F1-6874-01 14 103598087 103598087 T C TNFAIP2 Silent p.H470H 0.25 TCGA-F1-6874-01 14 105418426 105418426 T C AHNAK2 Missense_Mutation p.D1121G 0.28 benign(0.43) TCGA-F1-6874-01 14 106209306 106209306 C T IGHG1 Missense_Mutation p.E35K 0.09 deleterious(0.01) probably_damaging(0.913) TCGA-F1-6874-01 14 19559070 19559070 G A POTEG Missense_Mutation p.G239E 0.16 deleterious(0.01) probably_damaging(1) TCGA-F1-6874-01 14 20388906 20388906 C T OR4K5 Silent p.L47L 0.13 TCGA-F1-6874-01 14 21549815 21549815 G A ARHGEF40 Missense_Mutation p.G930S 0.32 tolerated(0.16) probably_damaging(0.997) TCGA-F1-6874-01 14 21826587 21826587 C A SUPT16H Splice_Site p.X768_splice 0.35 TCGA-F1-6874-01 14 21827659 21827659 T C SUPT16H Missense_Mutation p.D762G 0.18 deleterious(0) probably_damaging(0.998) TCGA-F1-6874-01 14 23236581 23236581 G T OXA1L Missense_Mutation p.S123I 0.31 tolerated(0.36) benign(0.15) TCGA-F1-6874-01 14 23518350 23518350 G A CDH24 Missense_Mutation p.R616C 0.42 deleterious(0.01) probably_damaging(0.935) TCGA-F1-6874-01 14 23845184 23845184 C A IL25 3'UTR 0.14 TCGA-F1-6874-01 14 23902765 23902765 G A MYH7 Silent p.V59V 0.34 TCGA-F1-6874-01 14 24588791 24588791 T G DCAF11 Missense_Mutation p.V291G 0.28 deleterious(0) possibly_damaging(0.864) TCGA-F1-6874-01 14 31598602 31598602 G A HECTD1 Silent p.G1325G 0.12 TCGA-F1-6874-01 14 36074915 36074915 G A RALGAPA1 Silent p.C1804C 0.26 TCGA-F1-6874-01 14 37145547 37145547 G - PAX9 Frame_Shift_Del p.G307Afs*85 0.15 TCGA-F1-6874-01 14 45578921 45578921 G A PRPF39 Missense_Mutation p.V372I 0.37 tolerated(0.3) benign(0.035) TCGA-F1-6874-01 14 50586993 50586993 C A SOS2 Missense_Mutation p.K1163N 0.16 tolerated(0.17) benign(0.143) TCGA-F1-6874-01 14 53558636 53558636 T C DDHD1 Missense_Mutation p.T386A 0.36 deleterious(0.02) benign(0.437) TCGA-F1-6874-01 14 65406501 65406501 C - GPX2 Frame_Shift_Del p.G93Vfs*? 0.17 TCGA-F1-6874-01 14 66200014 66200014 A G FUT8 Missense_Mutation p.Y442C 0.37 deleterious(0) probably_damaging(0.996) TCGA-F1-6874-01 14 71445182 71445182 C T PCNX Missense_Mutation p.P710S 0.27 tolerated(0.35) probably_damaging(0.999) TCGA-F1-6874-01 14 73973210 73973210 G T HEATR4 Silent p.A649A 0.28 TCGA-F1-6874-01 14 75514338 75514338 T - MLH3 Frame_Shift_Del p.N674Ifs*6 0.30 TCGA-F1-6874-01 14 81952630 81952630 T C SEL1L Intron 0.08 TCGA-F1-6874-01 14 90744615 90744615 C T NRDE2 3'UTR 0.26 TCGA-F1-6874-01 14 90744651 90744651 G A NRDE2 3'UTR 0.38 TCGA-F1-6874-01 14 90782994 90782994 G - NRDE2 Frame_Shift_Del p.T112Kfs*47 0.18 TCGA-F1-6874-01 14 93760864 93760865 - A BTBD7 Frame_Shift_Ins p.K168* 0.16 TCGA-F1-6874-01 14 94079256 94079256 A - UNC79 Frame_Shift_Del p.K1113Rfs*37 0.29 TCGA-F1-6874-01 14 95599814 95599814 A G DICER1 5'UTR 0.18 TCGA-F1-6874-01 15 28273032 28273032 C T OCA2 Missense_Mutation p.R167H 0.26 tolerated(0.22) benign(0.004) TCGA-F1-6874-01 15 28447385 28447385 G T HERC2 Silent p.A2497A 0.14 TCGA-F1-6874-01 15 28538093 28538093 G T HERC2 Missense_Mutation p.P88H 0.34 benign(0.254) TCGA-F1-6874-01 15 29993817 29993817 G A TJP1 Silent p.V1743V 0.10 TCGA-F1-6874-01 15 34628841 34628841 C T SLC12A6 Missense_Mutation p.R14Q 0.32 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-F1-6874-01 15 35198753 35198753 A G AQR Silent p.I608I 0.27 TCGA-F1-6874-01 15 37109467 37109467 A G CSNK1A1P1 RNA 0.04 TCGA-F1-6874-01 15 41340436 41340437 AT - INO80 Frame_Shift_Del p.I872Pfs*11 0.26 TCGA-F1-6874-01 15 41750018 41750019 AG - RTF1 Frame_Shift_Del p.E205Afs*18 0.15 TCGA-F1-6874-01 15 42057187 42057187 G T MGA Silent p.V2616V 0.09 TCGA-F1-6874-01 15 42059314 42059314 C T MGA Missense_Mutation p.P3012S 0.30 deleterious(0) probably_damaging(0.999) TCGA-F1-6874-01 15 42455911 42455911 C T VPS39 Missense_Mutation p.R681Q 0.41 deleterious(0.01) probably_damaging(0.997) TCGA-F1-6874-01 15 43621731 43621731 G A LCMT2 Silent p.H319H 0.26 TCGA-F1-6874-01 15 43628015 43628015 C T ADAL Missense_Mutation p.T62I 0.27 deleterious(0) probably_damaging(0.987) TCGA-F1-6874-01 15 44806839 44806839 G A CTDSPL2 Missense_Mutation p.R338Q 0.27 deleterious(0.02) benign(0.201) TCGA-F1-6874-01 15 48512844 48512844 C T SLC12A1 Missense_Mutation p.T145I 0.15 tolerated(0.18) benign(0.003) TCGA-F1-6874-01 15 48704804 48704804 G A FBN1 Missense_Mutation p.R2730W 0.23 probably_damaging(0.956) TCGA-F1-6874-01 15 48936990 48936990 C T FBN1 5'UTR 0.20 TCGA-F1-6874-01 15 51773539 51773540 - T DMXL2 Frame_Shift_Ins p.D1922Rfs*4 0.20 TCGA-F1-6874-01 15 51857352 51857352 G A DMXL2 Silent p.C99C 0.12 TCGA-F1-6874-01 15 54914546 54914546 T C UNC13C Missense_Mutation p.V2043A 0.26 deleterious_low_confidence(0) probably_damaging(0.951) TCGA-F1-6874-01 15 59499109 59499109 T C LDHAL6B 5'UTR 0.16 TCGA-F1-6874-01 15 62966048 62966048 G A TLN2 Missense_Mutation p.E271K 0.30 deleterious(0.01) possibly_damaging(0.455) TCGA-F1-6874-01 15 65369263 65369263 G A KBTBD13 Missense_Mutation p.R37H 0.44 tolerated(0.11) benign(0.029) TCGA-F1-6874-01 15 72549754 72549754 C T PARP6 Missense_Mutation p.V312I 0.25 tolerated(0.13) possibly_damaging(0.899) TCGA-F1-6874-01 15 72691037 72691037 G A TMEM202 Missense_Mutation p.C42Y 0.33 tolerated(0.28) benign(0) TCGA-F1-6874-01 15 72956844 72956844 C T GOLGA6B Missense_Mutation p.P498L 0.41 deleterious(0) probably_damaging(0.96) TCGA-F1-6874-01 15 76585005 76585005 T C ETFA Missense_Mutation p.K75E 0.26 deleterious(0.02) benign(0.429) TCGA-F1-6874-01 15 82335957 82335957 C T MEX3B Silent p.A418A 0.25 TCGA-F1-6874-01 15 83240329 83240329 T C CPEB1 Intron 0.32 TCGA-F1-6874-01 15 86311599 86311599 A G KLHL25 Silent p.P481P 0.31 TCGA-F1-6874-01 15 89872190 89872190 G A POLG Missense_Mutation p.A336V 0.29 tolerated(0.15) benign(0.006) TCGA-F1-6874-01 15 90164625 90164625 C G TICRR Missense_Mutation p.D1052E 0.26 tolerated(0.19) benign(0.011) TCGA-F1-6874-01 15 91527282 91527282 G A PRC1 Missense_Mutation p.T78I 0.27 tolerated(0.15) benign(0.026) TCGA-F1-6874-01 15 93552395 93552395 C T CHD2 Silent p.P1478P 0.10 TCGA-F1-6874-01 15 93588402 93588402 G A RGMA Silent p.A401A 0.22 TCGA-F1-6874-01 15 93588679 93588679 A G RGMA Missense_Mutation p.V309A 0.18 tolerated(1) benign(0.23) TCGA-F1-6874-01 15 94841688 94841688 G A MCTP2 Missense_Mutation p.G65D 0.25 tolerated(0.4) benign(0.005) TCGA-F1-6874-01 15 98514379 98514379 G A ARRDC4 Missense_Mutation p.D407N 0.28 tolerated(0.22) benign(0.007) TCGA-F1-6874-01 16 11000900 11000900 G A CIITA Silent p.P517P 0.24 TCGA-F1-6874-01 16 1270167 1270167 G A CACNA1H Missense_Mutation p.V2079I 0.26 tolerated(1) benign(0.004) TCGA-F1-6874-01 16 15718923 15718923 C T KIAA0430 Silent p.S687S 0.30 TCGA-F1-6874-01 16 15820795 15820797 CTT - MYH11 In_Frame_Del p.K1263del 0.21 TCGA-F1-6874-01 16 19020719 19020719 C A TMC7 Missense_Mutation p.S98Y 0.34 deleterious(0.01) possibly_damaging(0.612) TCGA-F1-6874-01 16 19126435 19126435 T C ITPRIPL2 Missense_Mutation p.S218P 0.33 deleterious(0.05) probably_damaging(0.91) TCGA-F1-6874-01 16 19278412 19278412 G T SYT17 3'UTR 0.26 TCGA-F1-6874-01 16 2050159 2050159 G T ZNF598 Missense_Mutation p.P464H 0.29 possibly_damaging(0.698) TCGA-F1-6874-01 16 20990740 20990740 G A DNAH3 Missense_Mutation p.T2663M 0.28 deleterious(0.05) possibly_damaging(0.663) TCGA-F1-6874-01 16 2106227 2106227 G A TSC2 Silent p.A210A 0.27 TCGA-F1-6874-01 16 21136501 21136501 G A DNAH3 Missense_Mutation p.H467Y 0.31 tolerated(0.85) benign(0) TCGA-F1-6874-01 16 2203418 2203418 C A RAB26 Missense_Mutation p.P256H 0.35 deleterious_low_confidence(0) probably_damaging(0.915) TCGA-F1-6874-01 16 22166968 22166968 G A VWA3A Nonsense_Mutation p.W1162* 0.27 TCGA-F1-6874-01 16 24802194 24802194 G A TNRC6A Missense_Mutation p.R744Q 0.31 deleterious(0.03) benign(0.326) TCGA-F1-6874-01 16 24960783 24960784 - T ARHGAP17 Frame_Shift_Ins p.L357Tfs*18 0.21 TCGA-F1-6874-01 16 25258123 25258125 TCC - ZKSCAN2 In_Frame_Del p.E465del 0.18 TCGA-F1-6874-01 16 2550973 2550973 G T TBC1D24 3'UTR 0.19 TCGA-F1-6874-01 16 27475941 27475941 G A GTF3C1 Missense_Mutation p.R1858W 0.23 tolerated(0.06) benign(0.001) TCGA-F1-6874-01 16 27540000 27540000 G C GTF3C1 Missense_Mutation p.L298V 0.28 tolerated(0.75) possibly_damaging(0.577) TCGA-F1-6874-01 16 28948647 28948647 C T CD19 Silent p.S418S 0.35 TCGA-F1-6874-01 16 29990825 29990825 G C TAOK2 Missense_Mutation p.E217D 0.32 deleterious(0) possibly_damaging(0.779) TCGA-F1-6874-01 16 30005879 30005879 C T HIRIP3 Missense_Mutation p.S196N 0.29 tolerated(0.1) benign(0.004) TCGA-F1-6874-01 16 30098135 30098135 G T TBX6 Missense_Mutation p.P293T 0.15 tolerated(0.21) benign(0.033) TCGA-F1-6874-01 16 3023060 3023060 G A PKMYT1 Missense_Mutation p.A465V 0.27 tolerated(0.06) benign(0.002) TCGA-F1-6874-01 16 3063922 3063922 C A CLDN9 Missense_Mutation p.P187T 0.29 deleterious(0.02) benign(0.02) TCGA-F1-6874-01 16 30740725 30740725 C - SRCAP Frame_Shift_Del p.P1988Lfs*48 0.25 TCGA-F1-6874-01 16 30748452 30748452 C T SRCAP Missense_Mutation p.P2364L 0.31 benign(0.362) TCGA-F1-6874-01 16 30762482 30762482 G A PHKG2 Missense_Mutation p.A51T 0.23 deleterious(0) possibly_damaging(0.872) TCGA-F1-6874-01 16 30976142 30976142 G A SETD1A Missense_Mutation p.R360H 0.29 possibly_damaging(0.84) TCGA-F1-6874-01 16 30998233 30998233 A G HSD3B7 Missense_Mutation p.M202V 0.06 deleterious(0.02) benign(0.145) TCGA-F1-6874-01 16 3820836 3820836 G A CREBBP Missense_Mutation p.T872M 0.29 benign(0.002) TCGA-F1-6874-01 16 48180287 48180287 G A ABCC12 Missense_Mutation p.R17W 0.29 deleterious(0) possibly_damaging(0.462) TCGA-F1-6874-01 16 4847715 4847715 C A ROGDI Missense_Mutation p.K274N 0.28 deleterious(0) probably_damaging(1) TCGA-F1-6874-01 16 4896208 4896208 C - GLYR1 Frame_Shift_Del p.K15Nfs*19 0.11 TCGA-F1-6874-01 16 4925334 4925334 G A UBN1 Missense_Mutation p.G975R 0.37 deleterious(0.01) probably_damaging(0.983) TCGA-F1-6874-01 16 49669949 49669949 A G ZNF423 Silent p.H1038H 0.24 TCGA-F1-6874-01 16 53358288 53358288 G T CHD9 Missense_Mutation p.L2709F 0.27 unknown(0) TCGA-F1-6874-01 16 56924230 56924230 G A SLC12A3 Missense_Mutation p.R777Q 0.32 tolerated(0.29) benign(0.096) TCGA-F1-6874-01 16 57604383 57604383 G A GPR114 Missense_Mutation p.G382R 0.23 deleterious(0) probably_damaging(1) TCGA-F1-6874-01 16 57718088 57718088 G A GPR97 Missense_Mutation p.G376R 0.22 tolerated(0.89) benign(0.282) TCGA-F1-6874-01 16 601555 601555 G A CAPN15 Missense_Mutation p.G746S 0.27 deleterious(0) probably_damaging(1) TCGA-F1-6874-01 16 618167 618167 G - NHLRC4 Frame_Shift_Del p.G42Afs*31 0.26 TCGA-F1-6874-01 16 66586615 66586615 C T CKLF-CMTM1 5'UTR 0.22 TCGA-F1-6874-01 16 66974389 66974389 G A CES2 Missense_Mutation p.A267T 0.31 deleterious(0) probably_damaging(1) TCGA-F1-6874-01 16 67183798 67183798 G A B3GNT9 Silent p.F197F 0.35 TCGA-F1-6874-01 16 67381488 67381488 A - LRRC36 Frame_Shift_Del p.S163Afs*7 0.19 TCGA-F1-6874-01 16 67943339 67943339 G - PSKH1 Frame_Shift_Del p.G230Afs*24 0.21 TCGA-F1-6874-01 16 68714935 68714935 C T CDH3 Missense_Mutation p.T311M 0.20 deleterious(0) probably_damaging(0.978) TCGA-F1-6874-01 16 68847398 68847398 G T CDH1 Missense_Mutation p.K440N 0.30 deleterious(0) probably_damaging(0.995) TCGA-F1-6874-01 16 70867810 70867810 G A HYDIN Silent p.N4553N 0.34 TCGA-F1-6874-01 16 72991758 72991758 C - ZFHX3 Frame_Shift_Del p.E763Sfs*61 0.31 TCGA-F1-6874-01 16 74752999 74752999 G T FA2H Missense_Mutation p.L225I 0.28 tolerated(0.07) benign(0.12) TCGA-F1-6874-01 16 75563882 75563882 G A CHST5 Missense_Mutation p.P134L 0.28 deleterious(0) probably_damaging(0.975) TCGA-F1-6874-01 16 75563934 75563934 G A CHST5 Silent p.L117L 0.27 TCGA-F1-6874-01 16 77227571 77227571 G A MON1B Silent p.S124S 0.11 TCGA-F1-6874-01 16 77775613 77775613 T - NUDT7 Frame_Shift_Del p.Y162Tfs*30 0.20 TCGA-F1-6874-01 16 786269 786269 T - NARFL Frame_Shift_Del p.I146* 0.24 TCGA-F1-6874-01 16 89702371 89702372 GA - DPEP1 Frame_Shift_Del p.R55Gfs*92 0.10 TCGA-F1-6874-01 16 89783151 89783151 C T VPS9D1 Silent p.T85T 0.17 TCGA-F1-6874-01 16 8999108 8999108 G A USP7 Silent p.D503D 0.37 TCGA-F1-6874-01 17 12626278 12626278 A - MYOCD Frame_Shift_Del p.N125Tfs*9 0.38 TCGA-F1-6874-01 17 14683434 14683434 G A AC005863.1 RNA 0.32 TCGA-F1-6874-01 17 1704002 1704002 G T SMYD4 Missense_Mutation p.S229Y 0.27 deleterious(0.01) possibly_damaging(0.635) TCGA-F1-6874-01 17 17696624 17696624 G - RAI1 Frame_Shift_Del p.A123Pfs*23 0.18 TCGA-F1-6874-01 17 18034842 18034842 T C MYO15A Silent p.F1401F 0.12 TCGA-F1-6874-01 17 18144927 18144927 G A LLGL1 Missense_Mutation p.V889I 0.59 tolerated(0.27) benign(0.012) TCGA-F1-6874-01 17 21081645 21081645 A G DHRS7B Missense_Mutation p.H100R 0.45 tolerated(0.66) benign(0.002) TCGA-F1-6874-01 17 26817589 26817589 G A SLC13A2 Missense_Mutation p.V166I 0.38 tolerated(0.23) benign(0.029) TCGA-F1-6874-01 17 26861463 26861463 C A FOXN1 Missense_Mutation p.L348I 0.32 deleterious(0.03) probably_damaging(0.983) TCGA-F1-6874-01 17 34062267 34062267 C T RASL10B Missense_Mutation p.R22C 0.33 deleterious(0) possibly_damaging(0.568) TCGA-F1-6874-01 17 34235608 34235608 C A AC015849.16 RNA 0.05 TCGA-F1-6874-01 17 35687288 35687288 G A ACACA Nonsense_Mutation p.R55* 0.26 TCGA-F1-6874-01 17 35872931 35872933 AGA - DUSP14 In_Frame_Del p.K187del 0.26 TCGA-F1-6874-01 17 37243886 37243886 G A PLXDC1 Missense_Mutation p.S294L 0.28 deleterious(0) possibly_damaging(0.844) TCGA-F1-6874-01 17 37885823 37885823 T G MIEN1 Missense_Mutation p.E100D 0.27 tolerated(0.1) benign(0.272) TCGA-F1-6874-01 17 38142881 38142881 G A PSMD3 Silent p.A155A 0.32 TCGA-F1-6874-01 17 38233862 38233862 G A THRA Splice_Site p.X74_splice 0.12 TCGA-F1-6874-01 17 38652589 38652595 GGGTGCA - TNS4 Frame_Shift_Del p.L28Qfs*24 0.19 TCGA-F1-6874-01 17 39019563 39019563 G A KRT12 Silent p.A376A 0.15 TCGA-F1-6874-01 17 39525807 39525807 G T KRT33B Missense_Mutation p.R66S 0.19 deleterious(0) probably_damaging(0.997) TCGA-F1-6874-01 17 39680055 39680055 G A KRT19 Silent p.R381R 0.25 TCGA-F1-6874-01 17 39680717 39680717 C T KRT19 Missense_Mutation p.A246T 0.33 tolerated(1) benign(0.042) TCGA-F1-6874-01 17 39969513 39969513 G A FKBP10 Missense_Mutation p.G76D 0.07 deleterious(0) probably_damaging(1) TCGA-F1-6874-01 17 40023947 40023947 G A ACLY 3'UTR 0.42 TCGA-F1-6874-01 17 40706846 40706846 G A HSD17B1 Missense_Mutation p.E293K 0.11 tolerated(0.66) benign(0.039) TCGA-F1-6874-01 17 41020606 41020606 C - AOC4P RNA 0.25 TCGA-F1-6874-01 17 41341640 41341640 G A NBR1 Silent p.K172K 0.21 TCGA-F1-6874-01 17 41477053 41477053 C T ARL4D 5'UTR 0.36 TCGA-F1-6874-01 17 43246699 43246699 C T HEXIM2 Silent p.R128R 0.29 TCGA-F1-6874-01 17 44845923 44845923 G A WNT3 Silent p.Y277Y 0.26 TCGA-F1-6874-01 17 45380143 45380143 G A ITGB3 Missense_Mutation p.V691I 0.27 tolerated(0.67) benign(0.007) TCGA-F1-6874-01 17 46128959 46128959 C - NFE2L1 Frame_Shift_Del p.P162Qfs*6 0.24 TCGA-F1-6874-01 17 48252649 48252649 G T SGCA Missense_Mutation p.G339W 0.29 deleterious(0) probably_damaging(0.957) TCGA-F1-6874-01 17 48272956 48272956 G - COL1A1 Frame_Shift_Del p.P376Lfs*165 0.27 TCGA-F1-6874-01 17 5284683 5284683 G - RABEP1 Splice_Site p.X791_splice 0.32 TCGA-F1-6874-01 17 56700344 56700344 T C TEX14 Missense_Mutation p.H94R 0.31 deleterious(0.02) probably_damaging(0.988) TCGA-F1-6874-01 17 59560345 59560345 C - TBX4 Frame_Shift_Del p.P371Lfs*8 0.25 TCGA-F1-6874-01 17 60033826 60033826 T - MED13 Frame_Shift_Del p.S1833Vfs*16 0.24 TCGA-F1-6874-01 17 60062071 60062071 C T MED13 Missense_Mutation p.A878T 0.27 tolerated(0.7) benign(0) TCGA-F1-6874-01 17 60072555 60072555 T - MED13 Frame_Shift_Del p.D714Ifs*15 0.21 TCGA-F1-6874-01 17 60757243 60757243 C T MRC2 Missense_Mutation p.R760C 0.43 deleterious(0.01) possibly_damaging(0.893) TCGA-F1-6874-01 17 61781857 61781857 G A STRADA Missense_Mutation p.S315L 0.18 tolerated(0.06) probably_damaging(0.999) TCGA-F1-6874-01 17 61911863 61911863 A G SMARCD2 Missense_Mutation p.C298R 0.26 deleterious(0.01) probably_damaging(0.991) TCGA-F1-6874-01 17 61912836 61912836 C T SMARCD2 Missense_Mutation p.G220E 0.40 tolerated(0.44) probably_damaging(0.931) TCGA-F1-6874-01 17 62496081 62496081 G T DDX5 Missense_Mutation p.P602H 0.12 deleterious_low_confidence(0) possibly_damaging(0.635) TCGA-F1-6874-01 17 650231 650231 C T GEMIN4 Missense_Mutation p.S351N 0.06 tolerated(0.05) probably_damaging(0.999) TCGA-F1-6874-01 17 6547901 6547901 C T MED31 Silent p.A94A 0.58 TCGA-F1-6874-01 17 71398252 71398252 T A SDK2 Missense_Mutation p.E838V 0.17 deleterious(0.03) possibly_damaging(0.826) TCGA-F1-6874-01 17 72345394 72345394 C T KIF19 Silent p.G373G 0.31 TCGA-F1-6874-01 17 7319293 7319293 G - NLGN2 Frame_Shift_Del p.D502Mfs*34 0.20 TCGA-F1-6874-01 17 73658666 73658666 G A RECQL5 Missense_Mutation p.R222W 0.07 deleterious(0) probably_damaging(1) TCGA-F1-6874-01 17 73832117 73832117 C T UNC13D Missense_Mutation p.R507H 0.26 tolerated(0.26) benign(0.001) TCGA-F1-6874-01 17 74003402 74003402 C T EVPL Missense_Mutation p.G1962R 0.23 tolerated(0.08) benign(0.382) TCGA-F1-6874-01 17 74136150 74136150 G - FOXJ1 Frame_Shift_Del p.D110Tfs*11 0.26 TCGA-F1-6874-01 17 74623283 74623283 G A ST6GALNAC1 Silent p.P346P 0.44 TCGA-F1-6874-01 17 7483329 7483329 C G CD68 Missense_Mutation p.T84S 0.57 tolerated(0.15) possibly_damaging(0.874) TCGA-F1-6874-01 17 7579348 7579348 G C TP53 Missense_Mutation p.F113L 0.61 deleterious(0) probably_damaging(1) TCGA-F1-6874-01 17 76464933 76464933 G A DNAH17 Silent p.A2834A 0.25 TCGA-F1-6874-01 17 7736874 7736875 GA - DNAH2 3'UTR 0.16 TCGA-F1-6874-01 17 77709262 77709262 G A ENPP7 Missense_Mutation p.E274K 0.16 tolerated(0.97) benign(0.094) TCGA-F1-6874-01 17 78280270 78280270 T G RNF213 Splice_Site p.X809_splice 0.31 TCGA-F1-6874-01 17 80014355 80014355 C T GPS1 Missense_Mutation p.L389F 0.16 deleterious(0.02) possibly_damaging(0.551) TCGA-F1-6874-01 17 80014373 80014374 - C GPS1 Frame_Shift_Ins p.H397Pfs*28 0.20 TCGA-F1-6874-01 17 80320038 80320038 G A TEX19 Silent p.P4P 0.32 TCGA-F1-6874-01 17 80400298 80400298 G - HEXDC Frame_Shift_Del p.A532Lfs*41 0.24 TCGA-F1-6874-01 17 8108691 8108691 C T AURKB Missense_Mutation p.G235D 0.29 deleterious(0) probably_damaging(1) TCGA-F1-6874-01 17 9828811 9828811 T C GAS7 Missense_Mutation p.R374G 0.48 deleterious(0) probably_damaging(0.94) TCGA-F1-6874-01 18 13621130 13621130 G A LDLRAD4 Missense_Mutation p.A66T 0.26 deleterious(0.02) benign(0.31) TCGA-F1-6874-01 18 18629104 18629104 G - ROCK1 Frame_Shift_Del p.W122Gfs*31 0.24 TCGA-F1-6874-01 18 265348 265348 T - THOC1 Frame_Shift_Del p.K48Nfs*12 0.43 TCGA-F1-6874-01 18 28913557 28913557 C T DSG1 Silent p.Y230Y 0.20 TCGA-F1-6874-01 18 334972 334972 G - COLEC12 Frame_Shift_Del p.P529Rfs*117 0.27 TCGA-F1-6874-01 18 43216967 43216967 T C SLC14A2 Silent p.S221S 0.28 TCGA-F1-6874-01 18 46284491 46284491 G - CTIF Frame_Shift_Del p.E264Rfs*12 0.27 TCGA-F1-6874-01 18 46343630 46343630 C T CTIF Silent p.D472D 0.32 TCGA-F1-6874-01 18 47802019 47802019 C T MBD1 Missense_Mutation p.R248H 0.25 deleterious(0.05) probably_damaging(0.993) TCGA-F1-6874-01 18 48190498 48190498 G A MAPK4 Missense_Mutation p.R57H 0.18 tolerated(0.2) benign(0.008) TCGA-F1-6874-01 18 55315824 55315824 C T ATP8B1 Missense_Mutation p.A1218T 0.25 deleterious(0) probably_damaging(0.974) TCGA-F1-6874-01 18 55990515 55990515 A - NEDD4L Frame_Shift_Del p.N156Mfs*51 0.24 TCGA-F1-6874-01 18 61058235 61058235 A G VPS4B Silent p.F436F 0.25 TCGA-F1-6874-01 18 61264630 61264631 - A SERPINB13 3'UTR 0.29 TCGA-F1-6874-01 18 67563197 67563197 A G CD226 Missense_Mutation p.M156T 0.35 tolerated(0.64) benign(0.011) TCGA-F1-6874-01 18 7955139 7955139 C T PTPRM Missense_Mutation p.P287S 0.18 deleterious(0.01) probably_damaging(1) TCGA-F1-6874-01 18 8784095 8784095 G - SOGA2 Frame_Shift_Del p.G330Vfs*9 0.10 TCGA-F1-6874-01 18 9570554 9570554 C T PPP4R1 Missense_Mutation p.G392R 0.30 tolerated(0.68) benign(0) TCGA-F1-6874-01 19 1055119 1055119 C T ABCA7 Missense_Mutation p.A1325V 0.21 tolerated(0.13) benign(0.01) TCGA-F1-6874-01 19 10795607 10795607 C T ILF3 Intron 0.21 TCGA-F1-6874-01 19 11152043 11152043 C T SMARCA4 Missense_Mutation p.R1411W 0.25 probably_damaging(0.915) TCGA-F1-6874-01 19 11832428 11832428 T C ZNF823 3'UTR 0.21 TCGA-F1-6874-01 19 12760206 12760206 C T MAN2B1 Silent p.T768T 0.13 TCGA-F1-6874-01 19 12814278 12814278 C T TNPO2 Missense_Mutation p.A725T 0.34 deleterious(0) probably_damaging(0.919) TCGA-F1-6874-01 19 12979633 12979633 G A MAST1 Missense_Mutation p.A915T 0.33 tolerated(0.11) probably_damaging(0.998) TCGA-F1-6874-01 19 13041545 13041545 G A FARSA Missense_Mutation p.R56W 0.17 tolerated(0.16) benign(0.183) TCGA-F1-6874-01 19 13201132 13201132 C T NFIX Missense_Mutation p.P425L 0.21 deleterious(0.01) benign(0.079) TCGA-F1-6874-01 19 1376571 1376571 G A MUM1 Missense_Mutation p.R711Q 0.12 tolerated_low_confidence(0.16) unknown(0) TCGA-F1-6874-01 19 14045127 14045127 G A PODNL1 Silent p.N204N 0.35 TCGA-F1-6874-01 19 14080843 14080843 C T RFX1 Missense_Mutation p.V487I 0.37 tolerated(0.06) probably_damaging(0.989) TCGA-F1-6874-01 19 14815865 14815865 G - ZNF333 Splice_Site p.X103_splice 0.27 TCGA-F1-6874-01 19 1487263 1487263 C T PCSK4 Silent p.S244S 0.35 TCGA-F1-6874-01 19 15648801 15648801 A G CYP4F22 Missense_Mutation p.Q223R 0.19 deleterious(0.02) benign(0.336) TCGA-F1-6874-01 19 15905282 15905282 A G OR10H5 Missense_Mutation p.T142A 0.11 tolerated(1) benign(0.001) TCGA-F1-6874-01 19 15918308 15918308 A G OR10H1 Silent p.H180H 0.20 TCGA-F1-6874-01 19 15918435 15918435 G A OR10H1 Missense_Mutation p.P138L 0.17 tolerated(0.24) benign(0.005) TCGA-F1-6874-01 19 16652696 16652696 G T CHERP Missense_Mutation p.L62M 0.16 tolerated(0.35) probably_damaging(0.992) TCGA-F1-6874-01 19 17001150 17001150 C T F2RL3 Silent p.A292A 0.33 TCGA-F1-6874-01 19 17487777 17487777 G A PLVAP Silent p.R107R 0.26 TCGA-F1-6874-01 19 18650477 18650477 G A FKBP8 Missense_Mutation p.R116C 0.20 tolerated(0.05) benign(0.337) TCGA-F1-6874-01 19 18964115 18964115 C T UPF1 Missense_Mutation p.A371V 0.26 tolerated(0.29) benign(0.032) TCGA-F1-6874-01 19 19162542 19162542 G A ARMC6 Missense_Mutation p.A131T 0.29 deleterious(0) probably_damaging(0.992) TCGA-F1-6874-01 19 19168579 19168579 C T ARMC6 3'UTR 0.25 TCGA-F1-6874-01 19 19414748 19414748 G - SUGP1 Intron 0.24 TCGA-F1-6874-01 19 19613277 19613277 C T GATAD2A Silent p.T571T 0.25 TCGA-F1-6874-01 19 21476609 21476609 T C ZNF708 Missense_Mutation p.T387A 0.22 deleterious(0.03) benign(0.027) TCGA-F1-6874-01 19 22155740 22155740 C T ZNF208 Missense_Mutation p.G699D 0.17 deleterious(0.02) possibly_damaging(0.733) TCGA-F1-6874-01 19 2252749 2252750 - G JSRP1 Frame_Shift_Ins p.R192Pfs*66 0.22 TCGA-F1-6874-01 19 2340969 2340969 G A SPPL2B RNA 0.18 TCGA-F1-6874-01 19 23544326 23544326 A G ZNF91 Silent p.T485T 0.29 TCGA-F1-6874-01 19 2790516 2790516 G T THOP1 Missense_Mutation p.R38S 0.08 tolerated(0.33) benign(0.004) TCGA-F1-6874-01 19 2878023 2878023 G A ZNF556 Missense_Mutation p.R356H 0.22 tolerated(0.65) benign(0) TCGA-F1-6874-01 19 31039848 31039848 C A ZNF536 Missense_Mutation p.P1108T 0.26 tolerated_low_confidence(1) benign(0.001) TCGA-F1-6874-01 19 3600462 3600462 C T TBXA2R Silent p.S57S 0.35 TCGA-F1-6874-01 19 36034314 36034314 C T GAPDHS Missense_Mutation p.R272W 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.698) TCGA-F1-6874-01 19 36210764 36210764 C - KMT2B Frame_Shift_Del p.P174Qfs*20 0.24 TCGA-F1-6874-01 19 36214078 36214078 C T KMT2B Silent p.H968H 0.06 TCGA-F1-6874-01 19 36357214 36357214 C - KIRREL2 Frame_Shift_Del p.C652Afs*79 0.29 TCGA-F1-6874-01 19 3738930 3738933 TCCT - TJP3 Frame_Shift_Del p.F487Tfs*120 0.32 TCGA-F1-6874-01 19 37619350 37619350 G A ZNF420 Missense_Mutation p.R486H 0.19 tolerated(0.57) possibly_damaging(0.694) TCGA-F1-6874-01 19 37854504 37854504 G - HKR1 Frame_Shift_Del p.K605Sfs*91 0.20 TCGA-F1-6874-01 19 38590669 38590669 G - SIPA1L3 Frame_Shift_Del p.G579Afs*4 0.16 TCGA-F1-6874-01 19 38939141 38939141 G A RYR1 Missense_Mutation p.R316H 0.34 probably_damaging(0.999) TCGA-F1-6874-01 19 40382347 40382347 G T FCGBP Silent p.T3513T 0.28 TCGA-F1-6874-01 19 40581329 40581329 C A ZNF780A Missense_Mutation p.K341N 0.26 deleterious(0) probably_damaging(1) TCGA-F1-6874-01 19 41447310 41447310 A G AC092071.1 5'Flank 0.04 TCGA-F1-6874-01 19 41515274 41515274 G A CYP2B6 Missense_Mutation p.D266N 0.46 deleterious(0.01) benign(0.374) TCGA-F1-6874-01 19 41928571 41928571 C T BCKDHA Silent p.R297R 0.27 TCGA-F1-6874-01 19 42221555 42221555 A G CEACAM5 Silent p.L380L 0.31 TCGA-F1-6874-01 19 42791776 42791776 G A CIC Missense_Mutation p.R221H 0.28 probably_damaging(0.992) TCGA-F1-6874-01 19 42814088 42814088 C A PRR19 Missense_Mutation p.P118T 0.42 tolerated(0.15) benign(0.116) TCGA-F1-6874-01 19 44056177 44056177 C T XRCC1 Silent p.T358T 0.30 TCGA-F1-6874-01 19 44660800 44660800 A T ZNF234 Nonsense_Mutation p.K211* 0.10 TCGA-F1-6874-01 19 44680402 44680402 C T ZNF226 Silent p.H329H 0.23 TCGA-F1-6874-01 19 44792700 44792700 A G ZNF235 Silent p.H296H 0.26 TCGA-F1-6874-01 19 45490487 45490487 A G CLPTM1 Missense_Mutation p.N282D 0.30 deleterious(0) probably_damaging(1) TCGA-F1-6874-01 19 45810056 45810058 CTT - CKM In_Frame_Del p.K366del 0.32 TCGA-F1-6874-01 19 45899977 45899977 G A PPP1R13L Missense_Mutation p.R180C 0.35 deleterious(0) probably_damaging(0.964) TCGA-F1-6874-01 19 4685774 4685774 G - DPP9 Frame_Shift_Del p.P632Rfs*22 0.17 TCGA-F1-6874-01 19 47259842 47259842 C T FKRP Missense_Mutation p.R379W 0.25 deleterious(0.01) probably_damaging(0.983) TCGA-F1-6874-01 19 47535965 47535965 T C NPAS1 Missense_Mutation p.V166A 0.25 tolerated(0.52) probably_damaging(0.999) TCGA-F1-6874-01 19 47569698 47569698 G A ZC3H4 Missense_Mutation p.P1276L 0.32 unknown(0) TCGA-F1-6874-01 19 48305502 48305502 G A TPRX1 Missense_Mutation p.P256S 0.19 tolerated(0.25) unknown(0) TCGA-F1-6874-01 19 49379079 49379079 C - PPP1R15A Frame_Shift_Del p.I627Sfs*23 0.28 TCGA-F1-6874-01 19 50399160 50399160 C A IL4I1 Missense_Mutation p.R77L 0.21 tolerated(0.15) probably_damaging(0.967) TCGA-F1-6874-01 19 51914440 51914440 C T SIGLEC10 Silent p.T669T 0.23 TCGA-F1-6874-01 19 5231455 5231455 A G PTPRS Missense_Mutation p.I674T 0.25 tolerated(0.09) possibly_damaging(0.839) TCGA-F1-6874-01 19 5239009 5239009 G A PTPRS Silent p.Y590Y 0.31 TCGA-F1-6874-01 19 52568436 52568436 G T ZNF841 Missense_Mutation p.A900D 0.27 deleterious(0.01) benign(0.135) TCGA-F1-6874-01 19 52954815 52954815 G A ZNF578 5'Flank 0.14 TCGA-F1-6874-01 19 53472882 53472882 A G ZNF702P RNA 0.20 TCGA-F1-6874-01 19 535840 535840 C T CDC34 Missense_Mutation p.R61C 0.27 tolerated(0.08) benign(0.026) TCGA-F1-6874-01 19 54377349 54377349 C T MYADM Missense_Mutation p.A189V 0.30 tolerated(0.44) benign(0.02) TCGA-F1-6874-01 19 54744724 54744725 - G LILRA6 Frame_Shift_Ins p.L313Pfs*11 0.14 TCGA-F1-6874-01 19 54965667 54965667 C T LENG8 Missense_Mutation p.P162L 0.33 deleterious(0.01) benign(0.422) TCGA-F1-6874-01 19 55087381 55087381 C A LILRA2 Missense_Mutation p.L354I 0.23 tolerated(0.21) possibly_damaging(0.648) TCGA-F1-6874-01 19 56133040 56133040 C T ZNF784 3'UTR 0.29 TCGA-F1-6874-01 19 56465980 56465980 G A NLRP8 Missense_Mutation p.E186K 0.22 tolerated(0.48) benign(0.002) TCGA-F1-6874-01 19 56477621 56477621 C T NLRP8 Silent p.I752I 0.15 TCGA-F1-6874-01 19 56600174 56600174 C T ZNF787 Missense_Mutation p.A123T 0.19 tolerated(0.16) probably_damaging(0.915) TCGA-F1-6874-01 19 5684801 5684801 G A HSD11B1L Intron 0.30 TCGA-F1-6874-01 19 56969550 56969550 T A ZNF667 Missense_Mutation p.E76V 0.25 deleterious(0) benign(0.137) TCGA-F1-6874-01 19 57802483 57802483 C T ZNF460 Missense_Mutation p.R192C 0.08 deleterious(0) possibly_damaging(0.67) TCGA-F1-6874-01 19 8002975 8002975 T - TIMM44 Frame_Shift_Del p.K83Nfs*9 0.26 TCGA-F1-6874-01 19 9801898 9801898 A G ZNF812 Missense_Mutation p.V94A 0.25 tolerated(0.42) probably_damaging(0.986) TCGA-F1-6874-01 1 101203814 101203814 T C VCAM1 Missense_Mutation p.V732A 0.40 deleterious(0.03) benign(0.163) TCGA-F1-6874-01 1 10166514 10166514 G A UBE4B Missense_Mutation p.A357T 0.09 tolerated_low_confidence(0.24) possibly_damaging(0.499) TCGA-F1-6874-01 1 10399850 10399850 C A KIF1B Missense_Mutation p.A1103E 0.29 deleterious(0) probably_damaging(0.995) TCGA-F1-6874-01 1 10715779 10715779 G A CASZ1 Missense_Mutation p.P531L 0.26 tolerated(0.11) probably_damaging(0.999) TCGA-F1-6874-01 1 109560141 109560141 T - WDR47 Frame_Shift_Del p.R81Gfs*7 0.33 TCGA-F1-6874-01 1 109793248 109793248 C - CELSR2 Frame_Shift_Del p.S185Afs*19 0.09 TCGA-F1-6874-01 1 109810548 109810548 G A CELSR2 Missense_Mutation p.A2062T 0.13 deleterious(0) probably_damaging(0.996) TCGA-F1-6874-01 1 110171328 110171328 G A AMPD2 Missense_Mutation p.G545R 0.24 deleterious(0) probably_damaging(1) TCGA-F1-6874-01 1 110734624 110734624 C T SLC6A17 Missense_Mutation p.R299W 0.17 deleterious(0) probably_damaging(0.999) TCGA-F1-6874-01 1 11105485 11105485 C T MASP2 Missense_Mutation p.R175H 0.11 tolerated(0.1) benign(0.015) TCGA-F1-6874-01 1 116563380 116563380 T - SLC22A15 Frame_Shift_Del p.S159Pfs*9 0.30 TCGA-F1-6874-01 1 116932304 116932304 C T ATP1A1 Missense_Mutation p.P333L 0.30 deleterious(0) probably_damaging(1) TCGA-F1-6874-01 1 11728803 11728803 G T FBXO6 Missense_Mutation p.A30S 0.29 deleterious(0.01) probably_damaging(0.986) TCGA-F1-6874-01 1 117560078 117560078 T A CD101 Missense_Mutation p.V532D 0.08 deleterious(0) probably_damaging(0.98) TCGA-F1-6874-01 1 117656107 117656107 C A TRIM45 Missense_Mutation p.G490C 0.19 deleterious(0) probably_damaging(0.998) TCGA-F1-6874-01 1 12010421 12010421 G A PLOD1 Missense_Mutation p.V104M 0.28 deleterious(0) probably_damaging(0.975) TCGA-F1-6874-01 1 120438116 120438116 T - ADAM30 Frame_Shift_Del p.S282Vfs*3 0.19 TCGA-F1-6874-01 1 120484286 120484286 T G NOTCH2 Silent p.T948T 0.33 TCGA-F1-6874-01 1 12335954 12335954 C - VPS13D Frame_Shift_Del p.L772Wfs*37 0.25 TCGA-F1-6874-01 1 13669276 13669276 C T PRAMEF14 Missense_Mutation p.E352K 0.28 tolerated(0.1) benign(0.079) TCGA-F1-6874-01 1 13719043 13719044 - T PRAMEF17 3'UTR 0.28 TCGA-F1-6874-01 1 149872030 149872030 C T BOLA1 3'UTR 0.08 TCGA-F1-6874-01 1 149903217 149903217 G A MTMR11 Nonsense_Mutation p.R409* 0.10 TCGA-F1-6874-01 1 150246562 150246562 C - C1orf54 Frame_Shift_Del p.S42Vfs*22 0.18 TCGA-F1-6874-01 1 150687103 150687104 TG - HORMAD1 Frame_Shift_Del p.Q77Vfs*10 0.15 TCGA-F1-6874-01 1 151261079 151261079 C - ZNF687 Frame_Shift_Del p.H733Mfs*30 0.30 TCGA-F1-6874-01 1 151378237 151378237 T C POGZ Missense_Mutation p.T1092A 0.21 tolerated(0.59) benign(0.001) TCGA-F1-6874-01 1 152777634 152777634 G A LCE1C Silent p.G107G 0.39 TCGA-F1-6874-01 1 153949753 153949753 G - JTB 5'UTR 0.21 TCGA-F1-6874-01 1 153958730 153958730 C T RAB13 5'UTR 0.40 TCGA-F1-6874-01 1 155291851 155291851 C T RUSC1 Missense_Mutation p.S96F 0.26 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-F1-6874-01 1 15541698 15541698 G A TMEM51 Missense_Mutation p.A39T 0.25 tolerated(0.66) benign(0.002) TCGA-F1-6874-01 1 155646486 155646486 C A YY1AP1 Missense_Mutation p.K197N 0.22 deleterious(0) probably_damaging(1) TCGA-F1-6874-01 1 155911816 155911816 C A RXFP4 Missense_Mutation p.H106N 0.22 tolerated(0.26) possibly_damaging(0.741) TCGA-F1-6874-01 1 157494244 157494244 T C FCRL5 Silent p.P688P 0.19 TCGA-F1-6874-01 1 158259735 158259735 C T CD1C 5'UTR 0.42 TCGA-F1-6874-01 1 158517497 158517497 A T OR6Y1 Missense_Mutation p.N133K 0.21 tolerated(0.35) benign(0.004) TCGA-F1-6874-01 1 15894398 15894398 G A DNAJC16 Missense_Mutation p.R692H 0.26 deleterious(0.02) possibly_damaging(0.815) TCGA-F1-6874-01 1 160146025 160146025 G A ATP1A4 Missense_Mutation p.G819S 0.32 deleterious(0.04) probably_damaging(1) TCGA-F1-6874-01 1 160265548 160265548 A - COPA Frame_Shift_Del p.F827Lfs*65 0.19 TCGA-F1-6874-01 1 161017809 161017809 A G ARHGAP30 Missense_Mutation p.V1001A 0.26 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-F1-6874-01 1 161087898 161087898 C A NIT1 5'UTR 0.30 TCGA-F1-6874-01 1 161134660 161134660 A - USP21 Frame_Shift_Del p.S476Vfs*3 0.27 TCGA-F1-6874-01 1 161334773 161334773 T C C1orf192 Silent p.Q172Q 0.28 TCGA-F1-6874-01 1 161681834 161681834 C T FCRLA Missense_Mutation p.R227C 0.26 deleterious(0) probably_damaging(0.988) TCGA-F1-6874-01 1 169581513 169581513 C T SELP Silent p.P301P 0.32 TCGA-F1-6874-01 1 170688909 170688909 G A PRRX1 Missense_Mutation p.R95Q 0.26 deleterious(0.01) probably_damaging(0.979) TCGA-F1-6874-01 1 172569271 172569271 C T SUCO Missense_Mutation p.S994L 0.39 tolerated(0.37) benign(0.012) TCGA-F1-6874-01 1 17295652 17295652 C T CROCC Silent p.T1706T 0.20 TCGA-F1-6874-01 1 181732633 181732633 G A CACNA1E Missense_Mutation p.R1594H 0.28 deleterious(0) possibly_damaging(0.812) TCGA-F1-6874-01 1 182908471 182908471 T - SHCBP1L Frame_Shift_Del p.T306Lfs*38 0.16 TCGA-F1-6874-01 1 183534904 183534904 G T NCF2 Missense_Mutation p.S312Y 0.33 deleterious(0.01) possibly_damaging(0.806) TCGA-F1-6874-01 1 185088964 185088964 A - TRMT1L 3'UTR 0.35 TCGA-F1-6874-01 1 185962382 185962383 TT - HMCN1 Frame_Shift_Del p.V1151Cfs*27 0.09 TCGA-F1-6874-01 1 186092099 186092099 C T HMCN1 Silent p.S4082S 0.11 TCGA-F1-6874-01 1 186097347 186097347 G T HMCN1 Missense_Mutation p.Q4276H 0.25 possibly_damaging(0.748) TCGA-F1-6874-01 1 186368120 186368120 A G C1orf27 Missense_Mutation p.D315G 0.11 deleterious(0.02) possibly_damaging(0.561) TCGA-F1-6874-01 1 19513722 19513722 C T UBR4 Missense_Mutation p.R523Q 0.24 possibly_damaging(0.847) TCGA-F1-6874-01 1 196879599 196879599 C T CFHR4 Missense_Mutation p.P329S 0.26 tolerated(0.09) possibly_damaging(0.673) TCGA-F1-6874-01 1 197073232 197073232 T - ASPM Frame_Shift_Del p.I1717* 0.25 TCGA-F1-6874-01 1 198231732 198231732 C T NEK7 Missense_Mutation p.R76C 0.24 deleterious(0.02) possibly_damaging(0.748) TCGA-F1-6874-01 1 201022361 201022363 GAA - CACNA1S In_Frame_Del p.F1279del 0.35 TCGA-F1-6874-01 1 201981273 201981273 G T ELF3 Missense_Mutation p.G118W 0.15 deleterious(0) probably_damaging(0.993) TCGA-F1-6874-01 1 203682345 203682345 G A ATP2B4 Missense_Mutation p.R755Q 0.27 deleterious(0) probably_damaging(0.976) TCGA-F1-6874-01 1 206628370 206628370 A G SRGAP2 Missense_Mutation p.K750R 0.29 tolerated(1) benign(0.002) TCGA-F1-6874-01 1 206730879 206730879 C A RASSF5 Intron 0.26 TCGA-F1-6874-01 1 207238492 207238492 G A PFKFB2 Missense_Mutation p.D207N 0.25 possibly_damaging(0.637) TCGA-F1-6874-01 1 21551799 21551799 G A ECE1 Missense_Mutation p.R662W 0.35 deleterious(0) probably_damaging(0.936) TCGA-F1-6874-01 1 220869960 220869960 G A C1orf115 Missense_Mutation p.G106R 0.21 tolerated(0.06) probably_damaging(0.98) TCGA-F1-6874-01 1 224455820 224455820 G A NVL Nonsense_Mutation p.R700* 0.27 TCGA-F1-6874-01 1 227922492 227922492 G A JMJD4 Silent p.N142N 0.10 TCGA-F1-6874-01 1 228335202 228335202 G A GUK1 Missense_Mutation p.R137Q 0.11 tolerated(0.34) benign(0.022) TCGA-F1-6874-01 1 228468013 228468013 C T OBSCN Silent p.N3028N 0.30 TCGA-F1-6874-01 1 228564810 228564810 C T OBSCN Silent p.A8656A 0.22 TCGA-F1-6874-01 1 229631683 229631683 C A NUP133 Missense_Mutation p.D311Y 0.07 deleterious(0) probably_damaging(0.998) TCGA-F1-6874-01 1 231472113 231472113 C A EXOC8 Missense_Mutation p.C460F 0.09 deleterious(0) probably_damaging(0.979) TCGA-F1-6874-01 1 232581405 232581405 G A SIPA1L2 Nonsense_Mutation p.Q1075* 0.24 TCGA-F1-6874-01 1 23405511 23405511 C T KDM1A Silent p.R632R 0.28 TCGA-F1-6874-01 1 234367256 234367256 C T SLC35F3 Missense_Mutation p.T126M 0.24 tolerated(0.08) benign(0.136) TCGA-F1-6874-01 1 237923126 237923126 C T RYR2 Silent p.S3792S 0.33 TCGA-F1-6874-01 1 241680522 241680522 G A FH Missense_Mutation p.T76M 0.17 tolerated(0.05) benign(0.011) TCGA-F1-6874-01 1 248685355 248685355 G A OR2G6 Missense_Mutation p.M136I 0.21 deleterious(0.01) benign(0.126) TCGA-F1-6874-01 1 249108743 249108743 G A SH3BP5L Nonsense_Mutation p.R148* 0.22 TCGA-F1-6874-01 1 27088788 27088788 G - ARID1A Frame_Shift_Del p.G801Vfs*32 0.23 TCGA-F1-6874-01 1 27106804 27106804 C - ARID1A Frame_Shift_Del p.F2141Sfs*59 0.24 TCGA-F1-6874-01 1 27618840 27618840 G A WDTC1 Missense_Mutation p.S205N 0.23 tolerated(1) benign(0.001) TCGA-F1-6874-01 1 27875931 27875931 G A AHDC1 Missense_Mutation p.A899V 0.30 tolerated(0.15) possibly_damaging(0.682) TCGA-F1-6874-01 1 28564412 28564414 AAG - ATPIF1 In_Frame_Del p.K83del 0.21 TCGA-F1-6874-01 1 33623903 33623903 G A TRIM62 Silent p.G276G 0.19 TCGA-F1-6874-01 1 34677853 34677853 C T C1orf94 Missense_Mutation p.R523C 0.11 deleterious(0.01) probably_damaging(0.931) TCGA-F1-6874-01 1 3659653 3659653 C T TP73-AS1 RNA 0.29 TCGA-F1-6874-01 1 36615011 36615011 C A TRAPPC3 5'UTR 0.27 TCGA-F1-6874-01 1 36752298 36752298 G A THRAP3 Missense_Mutation p.R156H 0.37 tolerated(0.21) unknown(0) TCGA-F1-6874-01 1 37270561 37270561 G A GRIK3 Intron 0.10 TCGA-F1-6874-01 1 37316021 37316021 C A GRIK3 Missense_Mutation p.G406V 0.36 deleterious(0) probably_damaging(0.935) TCGA-F1-6874-01 1 38185238 38185238 G - EPHA10 Frame_Shift_Del p.R869Gfs*10 0.23 TCGA-F1-6874-01 1 40735757 40735757 T - ZMPSTE24 Frame_Shift_Del p.F197Lfs*9 0.10 TCGA-F1-6874-01 1 42629124 42629124 A T GUCA2A Missense_Mutation p.L78H 0.35 deleterious(0) probably_damaging(0.997) TCGA-F1-6874-01 1 43215937 43215937 C T LEPRE1 Missense_Mutation p.R547H 0.24 tolerated(0.05) benign(0.018) TCGA-F1-6874-01 1 43308910 43308910 G A ERMAP 3'UTR 0.43 TCGA-F1-6874-01 1 43394615 43394615 C T SLC2A1 Silent p.A354A 0.21 TCGA-F1-6874-01 1 43772910 43772910 C - TIE1 Frame_Shift_Del p.P248Lfs*117 0.27 TCGA-F1-6874-01 1 45116433 45116433 A G RNF220 Missense_Mutation p.R563G 0.25 deleterious(0) possibly_damaging(0.867) TCGA-F1-6874-01 1 45292921 45292921 C T PTCH2 Missense_Mutation p.R811H 0.21 tolerated(0.11) benign(0.006) TCGA-F1-6874-01 1 47717280 47717280 C T STIL Missense_Mutation p.S1132N 0.25 tolerated(0.18) probably_damaging(0.983) TCGA-F1-6874-01 1 53720817 53720817 G A LRP8 Silent p.A825A 0.35 TCGA-F1-6874-01 1 55119766 55119766 G A MROH7 Silent p.P389P 0.21 TCGA-F1-6874-01 1 55139382 55139382 G A MROH7 Silent p.G568G 0.30 TCGA-F1-6874-01 1 63008278 63008278 C G DOCK7 Splice_Site p.X984_splice 0.21 TCGA-F1-6874-01 1 64515507 64515507 G A ROR1 Missense_Mutation p.R103Q 0.25 tolerated(0.07) benign(0.271) TCGA-F1-6874-01 1 68944833 68944833 C T DEPDC1 Silent p.K702K 0.35 TCGA-F1-6874-01 1 70504369 70504369 G A LRRC7 Silent p.P916P 0.20 TCGA-F1-6874-01 1 70820864 70820864 C T HHLA3 Intron 0.17 TCGA-F1-6874-01 1 71513128 71513128 C T PTGER3 Missense_Mutation p.E45K 0.09 tolerated(0.21) benign(0.154) TCGA-F1-6874-01 1 75038995 75038995 T C C1orf173 Missense_Mutation p.E800G 0.29 tolerated(0.06) benign(0.006) TCGA-F1-6874-01 1 8390484 8390484 C - SLC45A1 Frame_Shift_Del p.P312Rfs*47 0.22 TCGA-F1-6874-01 1 86554903 86554903 T C COL24A1 Missense_Mutation p.Q554R 0.30 tolerated(0.35) benign(0.004) TCGA-F1-6874-01 1 989314 989314 G A AGRN Missense_Mutation p.V1945M 0.31 deleterious(0.04) possibly_damaging(0.897) TCGA-F1-6874-01 20 11899094 11899095 - A BTBD3 Frame_Shift_Ins p.K60Efs*6 0.18 TCGA-F1-6874-01 20 18365044 18365044 T C DZANK1 Nonstop_Mutation p.*753Wext*2 0.11 TCGA-F1-6874-01 20 20453589 20453589 A - RALGAPA2 Frame_Shift_Del p.F1793Lfs*9 0.19 TCGA-F1-6874-01 20 21492518 21492518 G A NKX2-2 3'UTR 0.24 TCGA-F1-6874-01 20 2378642 2378642 G A TGM6 Missense_Mutation p.V208M 0.48 deleterious(0.01) benign(0.133) TCGA-F1-6874-01 20 25038512 25038512 A G ACSS1 Missense_Mutation p.L76P 0.28 tolerated(0.2) possibly_damaging(0.866) TCGA-F1-6874-01 20 2635586 2635586 C T NOP56 Missense_Mutation p.R188C 0.18 deleterious(0) probably_damaging(1) TCGA-F1-6874-01 20 30419926 30419926 A T MYLK2 Missense_Mutation p.K566M 0.21 deleterious(0) probably_damaging(0.979) TCGA-F1-6874-01 20 30497561 30497561 G A TTLL9 Missense_Mutation p.V114M 0.22 deleterious(0.03) possibly_damaging(0.643) TCGA-F1-6874-01 20 30730868 30730868 C T TM9SF4 Silent p.V204V 0.10 TCGA-F1-6874-01 20 30734633 30734633 C T TM9SF4 Missense_Mutation p.A310V 0.13 deleterious(0.04) probably_damaging(1) TCGA-F1-6874-01 20 32232401 32232401 G A CBFA2T2 Silent p.S588S 0.29 TCGA-F1-6874-01 20 32660136 32660136 G T RALY Missense_Mutation p.D86Y 0.19 deleterious(0.01) probably_damaging(0.995) TCGA-F1-6874-01 20 32664877 32664877 C T RALY Silent p.G234G 0.20 TCGA-F1-6874-01 20 33345220 33345220 G - NCOA6 Frame_Shift_Del p.P444Qfs*48 0.14 TCGA-F1-6874-01 20 34526919 34526919 G A PHF20 Silent p.A867A 0.26 TCGA-F1-6874-01 20 34785928 34785928 C G EPB41L1 Missense_Mutation p.P545A 0.19 tolerated(0.58) benign(0.013) TCGA-F1-6874-01 20 3765853 3765853 C A CENPB Missense_Mutation p.E426D 0.33 tolerated_low_confidence(0.5) unknown(0) TCGA-F1-6874-01 20 39798904 39798904 G A PLCG1 Missense_Mutation p.A935T 0.18 tolerated(0.39) probably_damaging(0.999) TCGA-F1-6874-01 20 40081514 40081514 G A CHD6 Silent p.D1063D 0.24 TCGA-F1-6874-01 20 42693445 42693445 A C TOX2 Missense_Mutation p.K303T 0.23 deleterious(0.02) probably_damaging(0.979) TCGA-F1-6874-01 20 43561750 43561750 C - PABPC1L Frame_Shift_Del p.P458Rfs*24 0.28 TCGA-F1-6874-01 20 44049195 44049195 C - PIGT Frame_Shift_Del p.P300Rfs*10 0.22 TCGA-F1-6874-01 20 44171359 44171359 A C EPPIN Missense_Mutation p.L124R 0.17 tolerated(0.79) benign(0.03) TCGA-F1-6874-01 20 44641176 44641176 C - MMP9 Frame_Shift_Del p.L431Cfs*6 0.25 TCGA-F1-6874-01 20 46300955 46300955 T - SULF2 Frame_Shift_Del p.K521Nfs*31 0.17 TCGA-F1-6874-01 20 47592562 47592562 G T ARFGEF2 Missense_Mutation p.R595M 0.26 tolerated(0.08) benign(0.012) TCGA-F1-6874-01 20 47734557 47734557 G A STAU1 Silent p.P422P 0.21 TCGA-F1-6874-01 20 49354499 49354499 G A PARD6B Missense_Mutation p.V58I 0.24 tolerated(0.06) benign(0.234) TCGA-F1-6874-01 20 49510515 49510515 G A ADNP Missense_Mutation p.R246C 0.20 deleterious(0.01) possibly_damaging(0.87) TCGA-F1-6874-01 20 50346505 50346505 C T ATP9A Nonsense_Mutation p.W27* 0.23 TCGA-F1-6874-01 20 54974190 54974190 T A CSTF1 Missense_Mutation p.N271K 0.25 deleterious(0.02) benign(0.257) TCGA-F1-6874-01 20 56093672 56093672 G A CTCFL Intron 0.13 TCGA-F1-6874-01 20 58420272 58420272 A G PHACTR3 Missense_Mutation p.Y539C 0.12 deleterious(0) probably_damaging(0.995) TCGA-F1-6874-01 20 58514392 58514392 C T PPP1R3D Missense_Mutation p.A199T 0.25 deleterious(0.01) possibly_damaging(0.874) TCGA-F1-6874-01 20 60509202 60509202 C T CDH4 Missense_Mutation p.P823L 0.18 deleterious(0) probably_damaging(0.924) TCGA-F1-6874-01 20 60551346 60551346 T G TAF4 Missense_Mutation p.T1046P 0.18 possibly_damaging(0.867) TCGA-F1-6874-01 20 60967476 60967476 G - CABLES2 Frame_Shift_Del p.H354Mfs*4 0.19 TCGA-F1-6874-01 20 61982302 61982302 G - CHRNA4 Frame_Shift_Del p.P154Rfs*24 0.16 TCGA-F1-6874-01 20 62163938 62163939 - C PTK6 Frame_Shift_Ins p.D258Gfs*23 0.10 TCGA-F1-6874-01 20 62223391 62223391 G A GMEB2 Silent p.Y312Y 0.31 TCGA-F1-6874-01 20 62421759 62421759 C T ZBTB46 Missense_Mutation p.V118M 0.35 deleterious(0) probably_damaging(0.997) TCGA-F1-6874-01 20 9449312 9449312 C T PLCB4 Missense_Mutation p.R1103W 0.18 deleterious(0) probably_damaging(0.998) TCGA-F1-6874-01 21 17912163 17912163 T C MIRLET7C RNA 0.32 TCGA-F1-6874-01 21 22849643 22849643 A G NCAM2 Missense_Mutation p.K643R 0.33 tolerated(1) possibly_damaging(0.794) TCGA-F1-6874-01 21 22881367 22881367 C T NCAM2 Missense_Mutation p.A758V 0.28 deleterious(0) possibly_damaging(0.619) TCGA-F1-6874-01 21 30339315 30339315 C T LTN1 Missense_Mutation p.A546T 0.10 tolerated(0.41) benign(0.03) TCGA-F1-6874-01 21 31869351 31869351 G T KRTAP19-4 Silent p.G26G 0.28 TCGA-F1-6874-01 21 32496898 32496898 A G TIAM1 Silent p.P1416P 0.29 TCGA-F1-6874-01 21 33104102 33104102 G - SCAF4 5'UTR 0.33 TCGA-F1-6874-01 21 34889350 34889350 C A GART Nonsense_Mutation p.G685* 0.18 TCGA-F1-6874-01 21 35209291 35209291 G A ITSN1 Intron 0.25 TCGA-F1-6874-01 21 36164838 36164838 C T RUNX1 Missense_Mutation p.R346H 0.14 deleterious(0.02) probably_damaging(0.944) TCGA-F1-6874-01 21 40782015 40782015 T - LCA5L Frame_Shift_Del p.K391Rfs*15 0.33 TCGA-F1-6874-01 21 41032654 41032654 T C B3GALT5 Silent p.P56P 0.23 TCGA-F1-6874-01 21 42762585 42762585 C T MX2 Silent p.L276L 0.41 TCGA-F1-6874-01 21 42821193 42821193 C T MX1 Missense_Mutation p.P468L 0.15 deleterious(0.01) probably_damaging(0.983) TCGA-F1-6874-01 21 43519071 43519071 G A UMODL1 Missense_Mutation p.V323I 0.22 tolerated(0.06) probably_damaging(0.939) TCGA-F1-6874-01 21 46048035 46048035 C A KRTAP10-9 3'UTR 0.23 TCGA-F1-6874-01 21 46697010 46697010 G A POFUT2 Silent p.D251D 0.22 TCGA-F1-6874-01 21 46925087 46925087 C T COL18A1 Missense_Mutation p.P1150S 0.17 probably_damaging(0.999) TCGA-F1-6874-01 22 17663531 17663531 T - CECR1 Frame_Shift_Del p.K401Rfs*5 0.26 TCGA-F1-6874-01 22 18604386 18604386 C A TUBA8 Silent p.S48S 0.31 TCGA-F1-6874-01 22 19052470 19052470 G A DGCR2 Missense_Mutation p.R147C 0.37 deleterious(0) probably_damaging(0.998) TCGA-F1-6874-01 22 19752515 19752515 G A TBX1 Missense_Mutation p.R240H 0.25 deleterious(0) probably_damaging(0.999) TCGA-F1-6874-01 22 19969123 19969123 C T ARVCF Silent p.L169L 0.19 TCGA-F1-6874-01 22 20800825 20800825 G A KLHL22 Missense_Mutation p.R482W 0.27 deleterious(0.03) probably_damaging(0.965) TCGA-F1-6874-01 22 21799242 21799242 G T HIC2 Missense_Mutation p.G20W 0.12 deleterious_low_confidence(0.03) probably_damaging(0.965) TCGA-F1-6874-01 22 21799520 21799520 C T HIC2 Silent p.A112A 0.35 TCGA-F1-6874-01 22 22280022 22280022 C T PPM1F Missense_Mutation p.R302H 0.22 deleterious(0) probably_damaging(1) TCGA-F1-6874-01 22 23523816 23523816 G - BCR Frame_Shift_Del p.D225Mfs*27 0.29 TCGA-F1-6874-01 22 29708273 29708273 G - GAS2L1 3'Flank 0.22 TCGA-F1-6874-01 22 32015604 32015604 C T PISD Silent p.S374S 0.21 TCGA-F1-6874-01 22 32302543 32302543 G A DEPDC5 3'UTR 0.30 TCGA-F1-6874-01 22 36690176 36690176 C T MYH9 Missense_Mutation p.V1267M 0.27 benign(0.109) TCGA-F1-6874-01 22 38119860 38119860 G A TRIOBP Missense_Mutation p.A433T 0.23 tolerated_low_confidence(0.91) benign(0) TCGA-F1-6874-01 22 38882439 38882439 C T DDX17 Missense_Mutation p.R566H 0.20 tolerated_low_confidence(0.08) probably_damaging(0.956) TCGA-F1-6874-01 22 41999312 41999312 G A DESI1 Missense_Mutation p.R122W 0.26 deleterious(0) possibly_damaging(0.908) TCGA-F1-6874-01 22 42523547 42523547 C T CYP2D6 Missense_Mutation p.V359M 0.22 deleterious(0) probably_damaging(0.997) TCGA-F1-6874-01 22 42608372 42608372 C T TCF20 Silent p.P980P 0.20 TCGA-F1-6874-01 22 45939288 45939288 C T FBLN1 Silent p.N401N 0.30 TCGA-F1-6874-01 22 46653549 46653549 G A PKDREJ Missense_Mutation p.R1891W 0.04 deleterious(0.01) possibly_damaging(0.809) TCGA-F1-6874-01 22 46929555 46929555 C T CELSR1 Silent p.P1171P 0.20 TCGA-F1-6874-01 22 47054103 47054103 G A GRAMD4 Silent p.L101L 0.22 TCGA-F1-6874-01 22 50279692 50279692 G A ZBED4 Silent p.A794A 0.30 TCGA-F1-6874-01 22 50615930 50615930 G A PANX2 Silent p.A263A 0.22 TCGA-F1-6874-01 2 100623462 100623462 T C AFF3 Missense_Mutation p.R194G 0.30 deleterious(0.01) possibly_damaging(0.892) TCGA-F1-6874-01 2 101706808 101706808 A C TBC1D8 Missense_Mutation p.L49R 0.19 deleterious(0) probably_damaging(0.999) TCGA-F1-6874-01 2 10582054 10582054 G A ODC1 Silent p.D305D 0.31 TCGA-F1-6874-01 2 108872147 108872147 C T SULT1C3 Silent p.S173S 0.33 TCGA-F1-6874-01 2 10917839 10917839 C T ATP6V1C2 Silent p.G318G 0.33 TCGA-F1-6874-01 2 109513512 109513512 G A EDAR Missense_Mutation p.R400C 0.33 deleterious(0) probably_damaging(0.999) TCGA-F1-6874-01 2 11053303 11053303 G A KCNF1 Missense_Mutation p.A251T 0.06 deleterious(0.03) benign(0.419) TCGA-F1-6874-01 2 120129887 120129887 G T DBI Missense_Mutation p.G147V 0.25 deleterious(0) probably_damaging(0.998) TCGA-F1-6874-01 2 128861559 128861559 G A UGGT1 Missense_Mutation p.S83N 0.06 tolerated(0.28) benign(0.001) TCGA-F1-6874-01 2 131521308 131521308 G - AMER3 Frame_Shift_Del p.A557Rfs*127 0.34 TCGA-F1-6874-01 2 133971293 133971293 C - NCKAP5 Frame_Shift_Del p.A68Pfs*6 0.32 TCGA-F1-6874-01 2 148683686 148683686 A - ACVR2A Frame_Shift_Del p.K437Rfs*5 0.47 TCGA-F1-6874-01 2 152521935 152521935 C T NEB Missense_Mutation p.R1717H 0.22 probably_damaging(0.999) TCGA-F1-6874-01 2 158655948 158655948 T C ACVR1 Missense_Mutation p.S20G 0.25 tolerated(0.27) benign(0.001) TCGA-F1-6874-01 2 159537313 159537313 T - PKP4 3'UTR 0.41 TCGA-F1-6874-01 2 160813055 160813055 C - PLA2R1 Frame_Shift_Del p.T997Pfs*16 0.27 TCGA-F1-6874-01 2 16082320 16082320 C T MYCN Missense_Mutation p.P45L 0.43 deleterious(0) probably_damaging(0.995) TCGA-F1-6874-01 2 16085825 16085825 C - MYCN Frame_Shift_Del p.S336Lfs*15 0.09 TCGA-F1-6874-01 2 165551084 165551084 C T COBLL1 Missense_Mutation p.G978S 0.25 tolerated(1) benign(0.001) TCGA-F1-6874-01 2 167760304 167760304 G A XIRP2 Silent p.R104R 0.06 TCGA-F1-6874-01 2 171850197 171850197 A G TLK1 3'UTR 0.31 TCGA-F1-6874-01 2 172650198 172650198 G A SLC25A12 Missense_Mutation p.T462M 0.26 deleterious(0.02) probably_damaging(0.967) TCGA-F1-6874-01 2 173916534 173916534 C T RAPGEF4 3'UTR 0.23 TCGA-F1-6874-01 2 176948324 176948324 C T EVX2 Missense_Mutation p.A61T 0.35 tolerated(0.43) benign(0.002) TCGA-F1-6874-01 2 178879182 178879182 T G PDE11A Silent p.R306R 0.41 TCGA-F1-6874-01 2 179395856 179395856 C A TTN Missense_Mutation p.W35162C 0.09 TCGA-F1-6874-01 2 179446658 179446658 C A TTN Missense_Mutation p.K22146N 0.31 TCGA-F1-6874-01 2 179485026 179485026 C T TTN Missense_Mutation p.A15408T 0.22 TCGA-F1-6874-01 2 179596909 179596909 T C TTN Missense_Mutation p.E5596G 0.34 TCGA-F1-6874-01 2 179611344 179611344 T C TTN Intron 0.29 TCGA-F1-6874-01 2 182763754 182763754 G A SSFA2 Missense_Mutation p.A140T 0.24 deleterious(0) probably_damaging(0.999) TCGA-F1-6874-01 2 190541314 190541315 - T ANKAR Frame_Shift_Ins p.E36* 0.34 TCGA-F1-6874-01 2 197645348 197645348 G A GTF3C3 Missense_Mutation p.P385S 0.24 tolerated(0.07) possibly_damaging(0.685) TCGA-F1-6874-01 2 198571290 198571290 T C MARS2 Silent p.Y387Y 0.31 TCGA-F1-6874-01 2 201436992 201436992 A - SGOL2 Frame_Shift_Del p.G644Vfs*18 0.21 TCGA-F1-6874-01 2 201501717 201501717 G T AOX1 Missense_Mutation p.K810N 0.24 deleterious(0) probably_damaging(1) TCGA-F1-6874-01 2 203332384 203332384 T - BMPR2 Frame_Shift_Del p.P132Hfs*20 0.27 TCGA-F1-6874-01 2 203384918 203384918 C T BMPR2 Nonsense_Mutation p.R321* 0.09 TCGA-F1-6874-01 2 203622055 203622055 C T FAM117B Silent p.S408S 0.23 TCGA-F1-6874-01 2 206166297 206166298 - A PARD3B Frame_Shift_Ins p.T775Nfs*25 0.12 TCGA-F1-6874-01 2 207171079 207171079 A C ZDBF2 Missense_Mutation p.Q609H 0.32 tolerated(0.66) possibly_damaging(0.585) TCGA-F1-6874-01 2 207619812 207619812 G A MDH1B Silent p.H277H 0.24 TCGA-F1-6874-01 2 20845146 20845146 G A HS1BP3 Missense_Mutation p.A51V 0.32 tolerated(0.13) benign(0.196) TCGA-F1-6874-01 2 209358433 209358433 G A PTH2R 3'UTR 0.24 TCGA-F1-6874-01 2 210561667 210561667 A - MAP2 Frame_Shift_Del p.T1474Qfs*14 0.18 TCGA-F1-6874-01 2 210887679 210887680 - T KANSL1L Frame_Shift_Ins p.N986Kfs*2 0.30 TCGA-F1-6874-01 2 211471488 211471488 T C CPS1 Missense_Mutation p.L678P 0.26 deleterious(0) probably_damaging(0.98) TCGA-F1-6874-01 2 212286760 212286760 C T ERBB4 Missense_Mutation p.R979Q 0.24 deleterious(0.02) benign(0.094) TCGA-F1-6874-01 2 21241915 21241915 T C APOB Missense_Mutation p.R1024G 0.38 benign(0.011) TCGA-F1-6874-01 2 215274982 215274982 C T SPAG16 Silent p.H613H 0.22 TCGA-F1-6874-01 2 217069929 217069929 G A XRCC5 3'UTR 0.29 TCGA-F1-6874-01 2 218713077 218713077 G T TNS1 Silent p.P596P 0.18 TCGA-F1-6874-01 2 218999632 218999632 C T CXCR2 Silent p.A36A 0.27 TCGA-F1-6874-01 2 219227555 219227555 G A C2orf62 Missense_Mutation p.R187Q 0.10 tolerated(0.09) benign(0.1) TCGA-F1-6874-01 2 219529955 219529955 G A RNF25 Nonsense_Mutation p.Q197* 0.08 TCGA-F1-6874-01 2 219857874 219857874 G A CRYBA2 Missense_Mutation p.P9S 0.35 tolerated(0.8) benign(0) TCGA-F1-6874-01 2 220073103 220073103 T C ZFAND2B Intron 0.11 TCGA-F1-6874-01 2 220081103 220081103 C - ABCB6 Frame_Shift_Del p.G318Vfs*9 0.20 TCGA-F1-6874-01 2 220100486 220100486 G A ANKZF1 Silent p.E620E 0.10 TCGA-F1-6874-01 2 220149476 220149476 G A DNAJB2 Missense_Mutation p.D248N 0.29 tolerated(0.08) benign(0.098) TCGA-F1-6874-01 2 220364856 220364856 A G GMPPA Silent p.R18R 0.24 TCGA-F1-6874-01 2 220370238 220370238 C T GMPPA Missense_Mutation p.R272W 0.43 deleterious(0) possibly_damaging(0.77) TCGA-F1-6874-01 2 220413997 220413997 C A TMEM198 Missense_Mutation p.P289H 0.20 tolerated(0.26) possibly_damaging(0.893) TCGA-F1-6874-01 2 220478946 220478946 C - STK11IP Frame_Shift_Del p.Q940Sfs*39 0.24 TCGA-F1-6874-01 2 225400346 225400346 C T CUL3 Missense_Mutation p.V93I 0.22 tolerated(0.74) benign(0.252) TCGA-F1-6874-01 2 233321901 233321901 G A ALPI Missense_Mutation p.A173T 0.10 deleterious(0) probably_damaging(1) TCGA-F1-6874-01 2 234590734 234590735 - G UGT1A7 Frame_Shift_Ins p.H53Afs*2 0.22 TCGA-F1-6874-01 2 235943690 235943690 C A SH3BP4 Missense_Mutation p.P15H 0.28 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-F1-6874-01 2 240033244 240033244 G - HDAC4 Frame_Shift_Del p.T648Pfs*14 0.33 TCGA-F1-6874-01 2 241398563 241398563 G A GPC1 Missense_Mutation p.V95I 0.45 tolerated(0.07) benign(0.029) TCGA-F1-6874-01 2 242080060 242080060 C T PASK Missense_Mutation p.R102Q 0.24 tolerated(0.13) benign(0.001) TCGA-F1-6874-01 2 26999343 26999343 C T SLC35F6 Silent p.G213G 0.33 TCGA-F1-6874-01 2 27424654 27424654 A G SLC5A6 Missense_Mutation p.I475T 0.23 tolerated(0.14) benign(0.001) TCGA-F1-6874-01 2 29404513 29404513 C T CLIP4 Silent p.H624H 0.06 TCGA-F1-6874-01 2 31215869 31215869 G A GALNT14 Intron 0.17 TCGA-F1-6874-01 2 32422847 32422847 T A SLC30A6 Missense_Mutation p.L246H 0.09 deleterious(0.05) possibly_damaging(0.882) TCGA-F1-6874-01 2 3392162 3392162 C T TRAPPC12 Silent p.T256T 0.17 TCGA-F1-6874-01 2 37349801 37349801 C T EIF2AK2 Silent p.A305A 0.23 TCGA-F1-6874-01 2 39944243 39944243 A G TMEM178A Missense_Mutation p.D249G 0.28 deleterious(0.03) probably_damaging(0.998) TCGA-F1-6874-01 2 42990086 42990086 C T OXER1 Missense_Mutation p.E412K 0.28 tolerated(0.24) benign(0.001) TCGA-F1-6874-01 2 43956822 43956822 T C PLEKHH2 Missense_Mutation p.V923A 0.35 tolerated(1) benign(0.001) TCGA-F1-6874-01 2 50280726 50280726 G A NRXN1 Missense_Mutation p.R1311C 0.33 deleterious(0) probably_damaging(0.909) TCGA-F1-6874-01 2 54839322 54839322 C T SPTBN1 Missense_Mutation p.R109C 0.08 deleterious(0) probably_damaging(1) TCGA-F1-6874-01 2 55562112 55562112 T - CCDC88A Frame_Shift_Del p.E616Nfs*33 0.16 TCGA-F1-6874-01 2 60688221 60688221 G A BCL11A Missense_Mutation p.P609L 0.35 deleterious(0) benign(0.246) TCGA-F1-6874-01 2 62729851 62729851 C A TMEM17 Missense_Mutation p.S60I 0.21 tolerated(0.09) benign(0.059) TCGA-F1-6874-01 2 68692195 68692195 T - FBXO48 Frame_Shift_Del p.N28Mfs*33 0.18 TCGA-F1-6874-01 2 71160174 71160174 C - VAX2 Frame_Shift_Del p.P240Hfs*36 0.27 TCGA-F1-6874-01 2 71360642 71360643 - T MPHOSPH10 Frame_Shift_Ins p.E238* 0.22 TCGA-F1-6874-01 2 73490893 73490893 C T FBXO41 Missense_Mutation p.R663H 0.11 deleterious(0.03) possibly_damaging(0.784) TCGA-F1-6874-01 2 73799651 73799651 C T ALMS1 Silent p.S3548S 0.32 TCGA-F1-6874-01 2 74007024 74007026 CTT - DUSP11 In_Frame_Del p.K73del 0.26 TCGA-F1-6874-01 2 9531279 9531279 G A ASAP2 Silent p.P824P 0.30 TCGA-F1-6874-01 2 95952596 95952596 G A PROM2 Silent p.P695P 0.08 TCGA-F1-6874-01 2 99980750 99980750 A - EIF5B Frame_Shift_Del p.R387Efs*15 0.23 TCGA-F1-6874-01 3 100274057 100274058 - G TMEM45A Frame_Shift_Ins p.N3Efs*79 0.19 TCGA-F1-6874-01 3 107491918 107491918 A - BBX Frame_Shift_Del p.K452Rfs*49 0.23 TCGA-F1-6874-01 3 111766641 111766641 G A TMPRSS7 Silent p.L136L 0.30 TCGA-F1-6874-01 3 113172563 113172563 G T SPICE1 Missense_Mutation p.S631Y 0.21 tolerated(0.17) benign(0.133) TCGA-F1-6874-01 3 113379675 113379677 TTC - KIAA2018 In_Frame_Del p.K284del 0.18 TCGA-F1-6874-01 3 113679645 113679645 G A ZDHHC23 3'UTR 0.27 TCGA-F1-6874-01 3 113784223 113784223 G A QTRTD1 Missense_Mutation p.G52D 0.24 deleterious(0) probably_damaging(0.997) TCGA-F1-6874-01 3 121207550 121207550 G T POLQ Missense_Mutation p.L1410M 0.30 tolerated(0.08) possibly_damaging(0.717) TCGA-F1-6874-01 3 122247346 122247346 G A PARP9 Silent p.G810G 0.28 TCGA-F1-6874-01 3 125873468 125873468 C T ALDH1L1 Missense_Mutation p.A227T 0.21 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-F1-6874-01 3 12875432 12875434 AGA - CAND2 In_Frame_Del p.K1222del 0.13 TCGA-F1-6874-01 3 129198669 129198669 G A IFT122 Silent p.E515E 0.05 TCGA-F1-6874-01 3 129304808 129304808 C T PLXND1 Missense_Mutation p.R613H 0.26 tolerated(0.22) benign(0.001) TCGA-F1-6874-01 3 130300576 130300576 C A COL6A6 Missense_Mutation p.A1240D 0.31 deleterious(0) probably_damaging(0.999) TCGA-F1-6874-01 3 132175582 132175582 G A DNAJC13 Missense_Mutation p.V419I 0.14 tolerated(0.2) benign(0.004) TCGA-F1-6874-01 3 133534433 133534433 G T SRPRB Splice_Site p.X137_splice 0.24 TCGA-F1-6874-01 3 134086562 134086562 G - AMOTL2 Frame_Shift_Del p.P273Lfs*13 0.11 TCGA-F1-6874-01 3 134251733 134251733 A - CEP63 Frame_Shift_Del p.I146* 0.16 TCGA-F1-6874-01 3 137750034 137750035 - A CLDN18 3'UTR 0.34 TCGA-F1-6874-01 3 139279766 139279766 A - NMNAT3 3'UTR 0.20 TCGA-F1-6874-01 3 141163525 141163525 T C ZBTB38 Silent p.G765G 0.22 TCGA-F1-6874-01 3 141724321 141724321 T - TFDP2 Frame_Shift_Del p.T50Pfs*2 0.30 TCGA-F1-6874-01 3 148714559 148714560 AG - GYG1 Frame_Shift_Del p.E118Rfs*12 0.26 TCGA-F1-6874-01 3 158320655 158320655 C T MLF1 Nonsense_Mutation p.R241* 0.39 TCGA-F1-6874-01 3 158980401 158980401 C A IQCJ-SCHIP1 Missense_Mutation p.P74T 0.30 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-F1-6874-01 3 165491234 165491234 A G BCHE Missense_Mutation p.M582T 0.17 deleterious(0) probably_damaging(0.932) TCGA-F1-6874-01 3 165547795 165547795 T - BCHE Frame_Shift_Del p.T343Pfs*16 0.23 TCGA-F1-6874-01 3 167023611 167023611 A G ZBBX Silent p.S515S 0.20 TCGA-F1-6874-01 3 174814794 174814794 C T NAALADL2 Silent p.S86S 0.24 TCGA-F1-6874-01 3 183823624 183823624 C T HTR3E Silent p.I290I 0.22 TCGA-F1-6874-01 3 183888603 183888603 C T DVL3 3'UTR 0.33 TCGA-F1-6874-01 3 184098914 184098914 A T CHRD Intron 0.24 TCGA-F1-6874-01 3 184104513 184104513 C T CHRD Silent p.Y722Y 0.20 TCGA-F1-6874-01 3 185191163 185191163 C A MAP3K13 Missense_Mutation p.P682T 0.29 tolerated_low_confidence(0.06) probably_damaging(0.999) TCGA-F1-6874-01 3 185237017 185237017 C T LIPH Missense_Mutation p.A267T 0.32 tolerated(0.24) benign(0.075) TCGA-F1-6874-01 3 186570969 186570969 C T ADIPOQ Missense_Mutation p.A41V 0.26 tolerated(0.11) benign(0.052) TCGA-F1-6874-01 3 186953595 186953596 - C MASP1 Frame_Shift_Ins p.P689Tfs*2 0.18 TCGA-F1-6874-01 3 196744090 196744090 G A MFI2 Missense_Mutation p.R262W 0.16 deleterious(0.02) benign(0.18) TCGA-F1-6874-01 3 2908528 2908528 A G CNTN4 Missense_Mutation p.K183E 0.25 deleterious(0) possibly_damaging(0.892) TCGA-F1-6874-01 3 32200523 32200523 C T GPD1L Silent p.C258C 0.33 TCGA-F1-6874-01 3 37050312 37050331 ACCTTTTTTACAACATAGCC - MLH1 Frame_Shift_Del p.L155Efs*10 0.41 TCGA-F1-6874-01 3 38591803 38591803 G A SCN5A 3'UTR 0.22 TCGA-F1-6874-01 3 39174496 39174496 T A TTC21A Intron 0.13 TCGA-F1-6874-01 3 44968293 44968294 - T ZDHHC3 Frame_Shift_Ins p.T291Nfs*65 0.27 TCGA-F1-6874-01 3 45000845 45000845 G - ZDHHC3 Frame_Shift_Del p.Y29Tfs*39 0.09 TCGA-F1-6874-01 3 47036838 47036838 G A NBEAL2 Missense_Mutation p.R538H 0.33 deleterious(0) possibly_damaging(0.726) TCGA-F1-6874-01 3 48669520 48669520 G T SLC26A6 Intron 0.22 TCGA-F1-6874-01 3 48670411 48670411 G A SLC26A6 Silent p.S143S 0.17 TCGA-F1-6874-01 3 49084635 49084635 T C QRICH1 Silent p.P461P 0.30 TCGA-F1-6874-01 3 49168259 49168259 C T LAMB2 Missense_Mutation p.R317H 0.29 deleterious(0.02) possibly_damaging(0.667) TCGA-F1-6874-01 3 49463813 49463813 G A NICN1 Missense_Mutation p.R61C 0.29 deleterious(0) probably_damaging(0.972) TCGA-F1-6874-01 3 51417604 51417604 C - DOCK3 Frame_Shift_Del p.P1852Qfs*45 0.26 TCGA-F1-6874-01 3 51418838 51418838 C T DOCK3 Missense_Mutation p.R1981C 0.30 deleterious_low_confidence(0) possibly_damaging(0.72) TCGA-F1-6874-01 3 51430611 51430611 G T RBM15B Missense_Mutation p.R594L 0.29 deleterious(0.01) benign(0.119) TCGA-F1-6874-01 3 52551616 52551616 C T STAB1 Silent p.C1538C 0.30 TCGA-F1-6874-01 3 53326747 53326747 C T DCP1A Silent p.L245L 0.39 TCGA-F1-6874-01 3 55513421 55513421 G A WNT5A Silent p.C104C 0.40 TCGA-F1-6874-01 3 56468490 56468490 A G ERC2 Silent p.I182I 0.25 TCGA-F1-6874-01 3 62636706 62636706 A G CADPS Missense_Mutation p.I340T 0.28 deleterious(0.03) benign(0.152) TCGA-F1-6874-01 3 65342612 65342612 T C MAGI1 Missense_Mutation p.N1277S 0.37 tolerated(0.34) benign(0.007) TCGA-F1-6874-01 3 65425596 65425596 G A MAGI1 Nonsense_Mutation p.Q410* 0.24 TCGA-F1-6874-01 3 9034599 9034600 - C SRGAP3 Frame_Shift_Ins p.V850Gfs*10 0.32 TCGA-F1-6874-01 3 93605261 93605261 A - PROS1 Frame_Shift_Del p.F414Lfs*33 0.08 TCGA-F1-6874-01 3 9862377 9862377 C - TTLL3 Frame_Shift_Del p.E371Rfs*44 0.21 TCGA-F1-6874-01 3 9974363 9974365 CTT - IL17RC In_Frame_Del p.L559del 0.29 TCGA-F1-6874-01 4 100510863 100510863 G T MTTP Missense_Mutation p.A153S 0.27 deleterious(0.04) possibly_damaging(0.864) TCGA-F1-6874-01 4 1018752 1018752 C T FGFRL1 Missense_Mutation p.P378S 0.35 deleterious(0.01) probably_damaging(0.971) TCGA-F1-6874-01 4 110268716 110268716 G A SEC24B-AS1 RNA 0.36 TCGA-F1-6874-01 4 111412241 111412242 - C ENPEP Frame_Shift_Ins p.M282Hfs*14 0.24 TCGA-F1-6874-01 4 120192809 120192809 T C USP53 Silent p.S598S 0.29 TCGA-F1-6874-01 4 122774171 122774171 G A BBS7 Silent p.D263D 0.25 TCGA-F1-6874-01 4 128819735 128819735 T - PLK4 3'UTR 0.12 TCGA-F1-6874-01 4 134072659 134072659 A G PCDH10 Missense_Mutation p.D455G 0.29 deleterious(0) probably_damaging(0.996) TCGA-F1-6874-01 4 138451760 138451760 C T PCDH18 Missense_Mutation p.G495R 0.30 deleterious(0) possibly_damaging(0.698) TCGA-F1-6874-01 4 1389203 1389203 G A CRIPAK Missense_Mutation p.A302T 0.27 tolerated(0.35) probably_damaging(0.981) TCGA-F1-6874-01 4 151000401 151000401 G A DCLK2 Silent p.A74A 0.29 TCGA-F1-6874-01 4 153864507 153864507 T - FHDC1 Frame_Shift_Del p.W102Gfs*55 0.27 TCGA-F1-6874-01 4 154709663 154709663 C T SFRP2 Missense_Mutation p.E109K 0.27 tolerated(0.24) probably_damaging(0.995) TCGA-F1-6874-01 4 15601172 15601172 A - CC2D2A Frame_Shift_Del p.I1508Sfs*9 0.45 TCGA-F1-6874-01 4 158224724 158224724 G A GRIA2 Missense_Mutation p.G84R 0.34 deleterious(0.03) benign(0.081) TCGA-F1-6874-01 4 158233935 158233935 T C GRIA2 Missense_Mutation p.Y192H 0.22 deleterious(0.03) possibly_damaging(0.877) TCGA-F1-6874-01 4 166263130 166263130 C T MSMO1 3'UTR 0.18 TCGA-F1-6874-01 4 166913974 166913974 C A TLL1 Missense_Mutation p.A100D 0.24 tolerated(0.47) benign(0.001) TCGA-F1-6874-01 4 166986981 166986981 A G TLL1 Silent p.V718V 0.34 TCGA-F1-6874-01 4 186578702 186578702 G C SORBS2 Missense_Mutation p.T148S 0.23 tolerated(0.4) benign(0.002) TCGA-F1-6874-01 4 190947568 190947568 C T FRG2 Missense_Mutation p.S101N 0.17 tolerated(0.7) benign(0.037) TCGA-F1-6874-01 4 2273485 2273485 G A ZFYVE28 Missense_Mutation p.A782V 0.32 tolerated(0.06) probably_damaging(0.994) TCGA-F1-6874-01 4 23815550 23815550 T C PPARGC1A Missense_Mutation p.D519G 0.28 tolerated(0.23) benign(0.133) TCGA-F1-6874-01 4 25005583 25005583 C T LGI2 Silent p.A376A 0.23 TCGA-F1-6874-01 4 3215825 3215825 C A HTT Nonsense_Mutation p.C2305* 0.24 TCGA-F1-6874-01 4 3227435 3227436 - G HTT Frame_Shift_Ins p.E2606Gfs*62 0.36 TCGA-F1-6874-01 4 3449908 3449908 G A HGFAC Missense_Mutation p.D564N 0.38 tolerated(0.1) probably_damaging(0.965) TCGA-F1-6874-01 4 4303754 4303754 T - ZBTB49 Frame_Shift_Del p.H66Tfs*10 0.27 TCGA-F1-6874-01 4 44680700 44680700 G T GUF1 Missense_Mutation p.G21W 0.23 deleterious_low_confidence(0) benign(0.219) TCGA-F1-6874-01 4 47901438 47901438 G A NFXL1 Missense_Mutation p.R259C 0.20 deleterious(0) probably_damaging(0.953) TCGA-F1-6874-01 4 515707 515707 G A PIGG Missense_Mutation p.V531M 0.12 tolerated(0.22) benign(0.007) TCGA-F1-6874-01 4 52944991 52944991 T G SPATA18 Missense_Mutation p.F371V 0.34 deleterious(0.01) probably_damaging(0.943) TCGA-F1-6874-01 4 54324899 54324899 C T FIP1L1 Nonsense_Mutation p.R527* 0.11 TCGA-F1-6874-01 4 57211364 57211364 T C AASDH Missense_Mutation p.T861A 0.17 tolerated(1) benign(0.004) TCGA-F1-6874-01 4 69332409 69332409 C T TMPRSS11E Missense_Mutation p.A66V 0.27 tolerated(0.07) benign(0.331) TCGA-F1-6874-01 4 7056395 7056395 C T TADA2B Missense_Mutation p.R293W 0.21 deleterious(0) possibly_damaging(0.893) TCGA-F1-6874-01 4 72618268 72618268 G A GC Silent p.S473S 0.14 TCGA-F1-6874-01 4 76927393 76927393 G A CXCL9 Silent p.C33C 0.24 TCGA-F1-6874-01 4 8584304 8584304 G A GPR78 Missense_Mutation p.A239T 0.29 deleterious(0) probably_damaging(0.998) TCGA-F1-6874-01 5 115783169 115783169 C A SEMA6A Missense_Mutation p.A745S 0.28 tolerated(0.64) probably_damaging(0.997) TCGA-F1-6874-01 5 131705664 131705664 C T SLC22A5 5'UTR 0.34 TCGA-F1-6874-01 5 135382021 135382021 C T TGFBI Intron 0.32 TCGA-F1-6874-01 5 13714533 13714533 G - DNAH5 Frame_Shift_Del p.P4369Qfs*8 0.19 TCGA-F1-6874-01 5 137533959 137533959 G A CDC23 Missense_Mutation p.S314L 0.30 tolerated(0.25) benign(0.004) TCGA-F1-6874-01 5 137803660 137803660 G A EGR1 Missense_Mutation p.A508T 0.09 tolerated_low_confidence(1) benign(0.177) TCGA-F1-6874-01 5 13809168 13809168 A G DNAH5 Silent p.I2579I 0.16 TCGA-F1-6874-01 5 13811783 13811783 G A DNAH5 Silent p.N2460N 0.15 TCGA-F1-6874-01 5 140183010 140183010 G A PCDHA3 Missense_Mutation p.S743N 0.17 deleterious_low_confidence(0.03) benign(0.213) TCGA-F1-6874-01 5 140229418 140229418 C T PCDHA9 Silent p.A446A 0.11 TCGA-F1-6874-01 5 140237615 140237615 C T PCDHA10 Missense_Mutation p.T661M 0.29 deleterious_low_confidence(0.03) probably_damaging(0.999) TCGA-F1-6874-01 5 140755201 140755201 G A PCDHGA6 Silent p.L517L 0.20 TCGA-F1-6874-01 5 140810726 140810726 C T PCDHGA12 Missense_Mutation p.R134C 0.28 tolerated_low_confidence(0.18) possibly_damaging(0.755) TCGA-F1-6874-01 5 141242828 141242828 C T PCDH1 Missense_Mutation p.R1023H 0.23 tolerated(0.15) benign(0.002) TCGA-F1-6874-01 5 141693947 141693947 C T SPRY4 Missense_Mutation p.V266M 0.24 deleterious(0.03) benign(0.012) TCGA-F1-6874-01 5 145719802 145719802 G A POU4F3 Missense_Mutation p.G271D 0.39 deleterious(0.02) benign(0.004) TCGA-F1-6874-01 5 145895164 145895164 C T GPR151 Silent p.P171P 0.22 TCGA-F1-6874-01 5 145969561 145969561 T C PPP2R2B Missense_Mutation p.I430M 0.29 deleterious(0.01) possibly_damaging(0.628) TCGA-F1-6874-01 5 145969731 145969731 G A PPP2R2B Missense_Mutation p.R374C 0.09 deleterious(0.01) possibly_damaging(0.819) TCGA-F1-6874-01 5 14711209 14711209 A - ANKH 3'UTR 0.27 TCGA-F1-6874-01 5 147488329 147488329 G A SPINK5 Missense_Mutation p.E541K 0.10 tolerated(0.14) possibly_damaging(0.841) TCGA-F1-6874-01 5 148680716 148680716 C T AFAP1L1 Missense_Mutation p.R84W 0.43 deleterious(0) possibly_damaging(0.556) TCGA-F1-6874-01 5 149457719 149457719 C T CSF1R Missense_Mutation p.V229I 0.36 tolerated(0.47) benign(0.013) TCGA-F1-6874-01 5 149515386 149515386 G T PDGFRB Silent p.G32G 0.20 TCGA-F1-6874-01 5 150028591 150028591 A C SYNPO Missense_Mutation p.S496R 0.22 deleterious(0) possibly_damaging(0.603) TCGA-F1-6874-01 5 153078575 153078575 G A GRIA1 Missense_Mutation p.G475E 0.20 deleterious(0) probably_damaging(1) TCGA-F1-6874-01 5 154394333 154394333 G A KIF4B Missense_Mutation p.S305N 0.10 deleterious(0) probably_damaging(0.999) TCGA-F1-6874-01 5 159344355 159344355 G A ADRA1B Missense_Mutation p.R148H 0.21 deleterious(0.01) probably_damaging(0.954) TCGA-F1-6874-01 5 159781820 159781820 C T C1QTNF2 Missense_Mutation p.G112S 0.27 deleterious(0) unknown(0) TCGA-F1-6874-01 5 16453248 16453248 G A ZNF622 Missense_Mutation p.R394C 0.06 deleterious(0.02) benign(0.082) TCGA-F1-6874-01 5 16508736 16508738 AAT - FAM134B Intron 0.30 TCGA-F1-6874-01 5 172507733 172507733 A - CREBRF 5'UTR 0.39 TCGA-F1-6874-01 5 172660142 172660142 C T NKX2-5 Silent p.A135A 0.15 TCGA-F1-6874-01 5 179291087 179291087 G A TBC1D9B Silent p.F1038F 0.10 TCGA-F1-6874-01 5 19571934 19571934 T C CDH18 Missense_Mutation p.N336S 0.18 tolerated(0.07) possibly_damaging(0.67) TCGA-F1-6874-01 5 21975261 21975261 A G CDH12 Silent p.D155D 0.17 TCGA-F1-6874-01 5 26890634 26890634 A - CDH9 Frame_Shift_Del p.F431Lfs*13 0.21 TCGA-F1-6874-01 5 32074276 32074276 C T PDZD2 Missense_Mutation p.R1022W 0.10 deleterious(0) benign(0.28) TCGA-F1-6874-01 5 33937425 33937425 C T RXFP3 Nonsense_Mutation p.R194* 0.24 TCGA-F1-6874-01 5 33938066 33938066 C T RXFP3 Silent p.I407I 0.33 TCGA-F1-6874-01 5 36976448 36976448 T C NIPBL Missense_Mutation p.I480T 0.32 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-F1-6874-01 5 39388902 39388902 G A DAB2 Missense_Mutation p.S208L 0.22 tolerated(0.82) benign(0) TCGA-F1-6874-01 5 54572100 54572100 T - DHX29 Frame_Shift_Del p.K807Nfs*16 0.26 TCGA-F1-6874-01 5 55168250 55168251 AT - IL31RA Frame_Shift_Del p.M143Dfs*12 0.26 TCGA-F1-6874-01 5 61763069 61763069 C T IPO11 Nonsense_Mutation p.R250* 0.31 TCGA-F1-6874-01 5 71492990 71492991 - C MAP1B Frame_Shift_Ins p.L1272Pfs*3 0.15 TCGA-F1-6874-01 5 73205327 73205327 C T ARHGEF28 Nonsense_Mutation p.R1418* 0.25 TCGA-F1-6874-01 5 76728856 76728856 A - WDR41 3'UTR 0.44 TCGA-F1-6874-01 5 79025081 79025081 A - CMYA5 Frame_Shift_Del p.G167Afs*4 0.25 TCGA-F1-6874-01 5 82948434 82948434 T - HAPLN1 Frame_Shift_Del p.T104Pfs*11 0.27 TCGA-F1-6874-01 5 93076712 93076713 - T POU5F2 Frame_Shift_Ins p.W187Vfs*48 0.09 TCGA-F1-6874-01 6 10556590 10556590 C T GCNT2 Intron 0.28 TCGA-F1-6874-01 6 107780537 107780537 G A PDSS2 5'UTR 0.17 TCGA-F1-6874-01 6 107955431 107955431 C - SOBP Frame_Shift_Del p.P463Rfs*31 0.30 TCGA-F1-6874-01 6 110763701 110763701 A G SLC22A16 Missense_Mutation p.I310T 0.37 tolerated(1) benign(0.01) TCGA-F1-6874-01 6 112670995 112670995 G A RFPL4B Missense_Mutation p.V29M 0.17 tolerated(0.05) possibly_damaging(0.714) TCGA-F1-6874-01 6 114378682 114378682 C T HS3ST5 Silent p.T260T 0.20 TCGA-F1-6874-01 6 123384920 123384920 T C CLVS2 3'UTR 0.30 TCGA-F1-6874-01 6 126080811 126080813 GCA - HEY2 In_Frame_Del p.A296del 0.23 TCGA-F1-6874-01 6 127796510 127796510 G T SOGA3 Silent p.T887T 0.36 TCGA-F1-6874-01 6 128294219 128294219 A - PTPRK Frame_Shift_Del p.F1412Sfs*4 0.26 TCGA-F1-6874-01 6 128298173 128298173 G A PTPRK Silent p.I1252I 0.17 TCGA-F1-6874-01 6 130535624 130535624 C T SAMD3 Missense_Mutation p.V43I 0.27 tolerated_low_confidence(0.09) benign(0.186) TCGA-F1-6874-01 6 131943072 131943072 A C MED23 Missense_Mutation p.I148M 0.25 tolerated(0.12) benign(0.38) TCGA-F1-6874-01 6 133802626 133802626 C A EYA4 Silent p.P332P 0.12 TCGA-F1-6874-01 6 133827394 133827394 G A EYA4 Intron 0.33 TCGA-F1-6874-01 6 136582536 136582536 C T BCLAF1 Missense_Mutation p.R875H 0.10 deleterious(0) possibly_damaging(0.715) TCGA-F1-6874-01 6 147684527 147684527 G T STXBP5 Missense_Mutation p.G868C 0.40 tolerated(0.05) probably_damaging(0.953) TCGA-F1-6874-01 6 148852697 148852697 G A SASH1 Silent p.P488P 0.40 TCGA-F1-6874-01 6 151686764 151686764 G A ZBTB2 Silent p.D479D 0.31 TCGA-F1-6874-01 6 152683404 152683404 C T SYNE1 Silent p.Q3400Q 0.24 TCGA-F1-6874-01 6 154481013 154481013 G - IPCEF1 Frame_Shift_Del p.Q423Rfs*59 0.24 TCGA-F1-6874-01 6 15452325 15452325 C - JARID2 Frame_Shift_Del p.P139Lfs*168 0.21 TCGA-F1-6874-01 6 158914604 158914604 G T TULP4 Splice_Site p.X544_splice 0.29 TCGA-F1-6874-01 6 158923693 158923693 C T TULP4 Nonsense_Mutation p.Q1000* 0.26 TCGA-F1-6874-01 6 159185697 159185697 G A SYTL3 3'UTR 0.10 TCGA-F1-6874-01 6 160557265 160557266 - C SLC22A1 Frame_Shift_Ins p.R287Sfs*11 0.23 TCGA-F1-6874-01 6 160679619 160679619 G A SLC22A2 Silent p.A57A 0.28 TCGA-F1-6874-01 6 17292140 17292140 C T RBM24 Silent p.A167A 0.43 TCGA-F1-6874-01 6 24667067 24667067 C A TDP2 Missense_Mutation p.E8D 0.28 tolerated_low_confidence(0.31) benign(0.008) TCGA-F1-6874-01 6 26225781 26225781 G A HIST1H3E Silent p.G133G 0.34 TCGA-F1-6874-01 6 26428893 26428893 A G BTN2A3P RNA 0.44 TCGA-F1-6874-01 6 27835086 27835086 G A HIST1H1B Silent p.Y74Y 0.10 TCGA-F1-6874-01 6 28872041 28872043 AGA - TRIM27 In_Frame_Del p.F449del 0.46 TCGA-F1-6874-01 6 29012667 29012667 C A OR2W1 Missense_Mutation p.G96C 0.16 deleterious(0) probably_damaging(0.993) TCGA-F1-6874-01 6 29581117 29581117 C T GABBR1 Missense_Mutation p.R490H 0.41 deleterious(0.05) benign(0.004) TCGA-F1-6874-01 6 29641302 29641302 C A ZFP57 Missense_Mutation p.V196F 0.33 deleterious(0) probably_damaging(0.991) TCGA-F1-6874-01 6 30675439 30675439 C - MDC1 Frame_Shift_Del p.A973Rfs*25 0.26 TCGA-F1-6874-01 6 31322883 31322883 C T HLA-B Splice_Site p.X338_splice 0.40 TCGA-F1-6874-01 6 32815289 32815289 C T TAP1 Splice_Site p.X695_splice 0.11 TCGA-F1-6874-01 6 33272171 33272171 G C TAPBP Silent p.V371V 0.05 TCGA-F1-6874-01 6 33636318 33636318 G A ITPR3 Missense_Mutation p.C638Y 0.52 deleterious(0) probably_damaging(0.988) TCGA-F1-6874-01 6 36336715 36336716 - C ETV7 Frame_Shift_Ins p.N267Kfs*22 0.17 TCGA-F1-6874-01 6 401689 401689 C T IRF4 Silent p.D337D 0.08 TCGA-F1-6874-01 6 42936167 42936167 G A PEX6 Missense_Mutation p.R517W 0.42 deleterious(0) benign(0.189) TCGA-F1-6874-01 6 43188260 43188260 C T CUL9 Missense_Mutation p.P2116S 0.24 deleterious(0) probably_damaging(0.996) TCGA-F1-6874-01 6 43488475 43488475 C A POLR1C Nonsense_Mutation p.C256* 0.28 TCGA-F1-6874-01 6 46620981 46620981 C T SLC25A27 Missense_Mutation p.P18S 0.21 deleterious(0.02) possibly_damaging(0.867) TCGA-F1-6874-01 6 54254616 54254617 - G TINAG Frame_Shift_Ins p.E444Rfs*13 0.26 TCGA-F1-6874-01 6 56376133 56376133 C A DST Missense_Mutation p.Q3591H 0.18 probably_damaging(0.999) TCGA-F1-6874-01 6 656756 656756 G A HUS1B Silent p.F63F 0.42 TCGA-F1-6874-01 6 72006266 72006266 T C OGFRL1 Splice_Site p.X182_splice 0.35 TCGA-F1-6874-01 6 75847173 75847173 C A COL12A1 Missense_Mutation p.G1792W 0.40 probably_damaging(0.992) TCGA-F1-6874-01 6 79707231 79707231 T A PHIP Missense_Mutation p.M701L 0.32 deleterious(0.03) benign(0.354) TCGA-F1-6874-01 6 80720630 80720630 A - TTK Frame_Shift_Del p.K192Sfs*18 0.21 TCGA-F1-6874-01 6 80750419 80750422 AAGT - TTK Splice_Site p.X830_splice 0.30 TCGA-F1-6874-01 6 83829481 83829481 G T DOPEY1 Missense_Mutation p.G299C 0.25 deleterious(0) probably_damaging(1) TCGA-F1-6874-01 6 86200308 86200310 GAA - NT5E In_Frame_Del p.K433del 0.28 TCGA-F1-6874-01 6 88228428 88228428 G A RARS2 Silent p.Y445Y 0.26 TCGA-F1-6874-01 6 90661567 90661568 - C BACH2 Frame_Shift_Ins p.F87Lfs*28 0.25 TCGA-F1-6874-01 7 100054446 100054446 C T C7orf61 Missense_Mutation p.V184I 0.11 tolerated(0.94) benign(0.003) TCGA-F1-6874-01 7 100404108 100404108 G A EPHB4 Silent p.Y806Y 0.20 TCGA-F1-6874-01 7 100680308 100680308 A C MUC17 Missense_Mutation p.S1871R 0.15 benign(0.307) TCGA-F1-6874-01 7 100680331 100680331 A G MUC17 Silent p.T1878T 0.15 TCGA-F1-6874-01 7 100686859 100686859 G A MUC17 Silent p.P4054P 0.09 TCGA-F1-6874-01 7 100806796 100806796 G C VGF Missense_Mutation p.D443E 0.22 deleterious_low_confidence(0.02) unknown(0) TCGA-F1-6874-01 7 102760123 102760123 A - NAPEPLD Frame_Shift_Del p.F281Sfs*14 0.25 TCGA-F1-6874-01 7 102952970 102952970 C T DNAJC2 3'UTR 0.14 TCGA-F1-6874-01 7 1037311 1037311 G - C7orf50 Frame_Shift_Del p.L179Cfs*136 0.23 TCGA-F1-6874-01 7 106520077 106520077 T C PIK3CG Silent p.G835G 0.23 TCGA-F1-6874-01 7 1097822 1097822 C T GPR146 Missense_Mutation p.T224M 0.30 tolerated(0.11) benign(0.032) TCGA-F1-6874-01 7 110763232 110763232 G T LRRN3 Missense_Mutation p.C135F 0.06 deleterious(0.03) benign(0.109) TCGA-F1-6874-01 7 110764173 110764173 G A LRRN3 Missense_Mutation p.E449K 0.24 deleterious(0) probably_damaging(0.994) TCGA-F1-6874-01 7 111127377 111127377 C - IMMP2L Frame_Shift_Del p.S53Afs*9 0.12 TCGA-F1-6874-01 7 112095822 112095822 C T IFRD1 Silent p.G33G 0.26 TCGA-F1-6874-01 7 117513419 117513419 C A CTTNBP2 Missense_Mutation p.E17D 0.44 tolerated_low_confidence(0.55) benign(0.003) TCGA-F1-6874-01 7 122261693 122261693 G T CADPS2 Missense_Mutation p.L316I 0.19 deleterious(0) probably_damaging(0.999) TCGA-F1-6874-01 7 127235677 127235677 G A FSCN3 Missense_Mutation p.R154H 0.22 tolerated(0.3) benign(0.001) TCGA-F1-6874-01 7 129394886 129394886 C T NRF1 Silent p.Y459Y 0.23 TCGA-F1-6874-01 7 131872350 131872350 T A PLXNA4 Missense_Mutation p.D958V 0.24 tolerated(0.22) benign(0.124) TCGA-F1-6874-01 7 138603975 138603975 C T KIAA1549 Missense_Mutation p.A133T 0.06 tolerated(0.12) benign(0.021) TCGA-F1-6874-01 7 139791777 139791777 A C KDM7A Missense_Mutation p.L853R 0.27 tolerated(0.22) benign(0.11) TCGA-F1-6874-01 7 140051148 140051148 G A SLC37A3 Silent p.I269I 0.04 TCGA-F1-6874-01 7 140269471 140269471 T G DENND2A Missense_Mutation p.Q505P 0.16 tolerated(0.24) possibly_damaging(0.757) TCGA-F1-6874-01 7 142231772 142231772 T C TRBV10-1 Missense_Mutation p.N49D 0.18 tolerated(1) benign(0.002) TCGA-F1-6874-01 7 142566348 142566348 C T EPHB6 Nonsense_Mutation p.Q713* 0.11 TCGA-F1-6874-01 7 142569312 142569312 T A TRPV6 3'UTR 0.27 TCGA-F1-6874-01 7 143097071 143097071 G A EPHA1 Missense_Mutation p.R170C 0.39 deleterious(0.01) possibly_damaging(0.863) TCGA-F1-6874-01 7 144364881 144364881 C T TPK1 Intron 0.19 TCGA-F1-6874-01 7 147600793 147600793 C T CNTNAP2 Silent p.C745C 0.18 TCGA-F1-6874-01 7 148311192 148311192 C A C7orf33 Missense_Mutation p.A88D 0.24 deleterious_low_confidence(0) possibly_damaging(0.82) TCGA-F1-6874-01 7 148456394 148456394 A G CUL1 Splice_Site p.X162_splice 0.24 TCGA-F1-6874-01 7 148951539 148951539 G - ZNF212 3'UTR 0.19 TCGA-F1-6874-01 7 148978644 148978644 C T ZNF783 Missense_Mutation p.T284M 0.15 tolerated(0.16) benign(0) TCGA-F1-6874-01 7 149475959 149475959 A G SSPO RNA 0.05 TCGA-F1-6874-01 7 149495203 149495203 G A SSPO RNA 0.21 TCGA-F1-6874-01 7 149508800 149508800 C T SSPO RNA 0.24 TCGA-F1-6874-01 7 150555030 150555030 C - AOC1 Frame_Shift_Del p.E493Rfs*13 0.18 TCGA-F1-6874-01 7 150711160 150711160 G A NOS3 Missense_Mutation p.R1172H 0.18 deleterious(0) possibly_damaging(0.881) TCGA-F1-6874-01 7 150714284 150714284 G A ATG9B Missense_Mutation p.R710W 0.17 deleterious(0) probably_damaging(1) TCGA-F1-6874-01 7 150771823 150771824 - C SLC4A2 Frame_Shift_Ins p.L983Pfs*149 0.19 TCGA-F1-6874-01 7 1510498 1510498 G A INTS1 Silent p.Y2147Y 0.36 TCGA-F1-6874-01 7 151093060 151093060 C A WDR86 Missense_Mutation p.K176N 0.19 deleterious(0) probably_damaging(0.96) TCGA-F1-6874-01 7 151874750 151874750 C T KMT2C Silent p.R2596R 0.17 TCGA-F1-6874-01 7 155473461 155473461 C - RBM33 Frame_Shift_Del p.P143Qfs*13 0.15 TCGA-F1-6874-01 7 158424235 158424235 A - NCAPG2 3'UTR 0.08 TCGA-F1-6874-01 7 158483354 158483354 C T NCAPG2 Missense_Mutation p.C148Y 0.20 tolerated(0.06) possibly_damaging(0.884) TCGA-F1-6874-01 7 20445782 20445782 G A ITGB8 Missense_Mutation p.D671N 0.14 tolerated(0.14) benign(0.261) TCGA-F1-6874-01 7 21510690 21510690 C T SP4 Intron 0.21 TCGA-F1-6874-01 7 23556005 23556005 G A TRA2A Missense_Mutation p.R105W 0.18 deleterious(0) possibly_damaging(0.689) TCGA-F1-6874-01 7 27135410 27135410 G A HOXA1 Missense_Mutation p.A41V 0.21 deleterious(0.01) probably_damaging(0.987) TCGA-F1-6874-01 7 28858738 28858738 G T CREB5 Nonsense_Mutation p.E457* 0.19 TCGA-F1-6874-01 7 2968323 2968323 G - CARD11 Frame_Shift_Del p.R555Gfs*45 0.22 TCGA-F1-6874-01 7 34851405 34851405 C A NPSR1 Silent p.T136T 0.25 TCGA-F1-6874-01 7 38469442 38469442 C T AMPH Silent p.P394P 0.17 TCGA-F1-6874-01 7 38798010 38798010 C T VPS41 Silent p.R498R 0.20 TCGA-F1-6874-01 7 4026921 4026921 A G SDK1 Missense_Mutation p.I700V 0.17 tolerated(0.65) benign(0.019) TCGA-F1-6874-01 7 42003945 42003945 G T GLI3 Missense_Mutation p.L1576I 0.14 deleterious(0) probably_damaging(0.996) TCGA-F1-6874-01 7 42006185 42006185 C T GLI3 Missense_Mutation p.G829D 0.18 tolerated(0.2) benign(0.034) TCGA-F1-6874-01 7 42012081 42012081 G A GLI3 Missense_Mutation p.P653L 0.27 tolerated(0.32) probably_damaging(0.999) TCGA-F1-6874-01 7 42958873 42958873 C T PSMA2 Intron 0.23 TCGA-F1-6874-01 7 43485109 43485109 G A HECW1 Missense_Mutation p.V780M 0.13 tolerated_low_confidence(0.18) benign(0.003) TCGA-F1-6874-01 7 44104780 44104780 G A PGAM2 Missense_Mutation p.R117C 0.20 deleterious(0.05) probably_damaging(0.999) TCGA-F1-6874-01 7 44715660 44715660 A G OGDH Missense_Mutation p.N373S 0.06 deleterious(0.03) probably_damaging(0.997) TCGA-F1-6874-01 7 45109526 45109526 C A CCM2 Silent p.A258A 0.21 TCGA-F1-6874-01 7 45115560 45115560 G A CCM2 Silent p.S434S 0.27 TCGA-F1-6874-01 7 47851502 47851502 C T PKD1L1 Silent p.T2498T 0.14 TCGA-F1-6874-01 7 47968829 47968829 C T PKD1L1 Silent p.A344A 0.20 TCGA-F1-6874-01 7 55087030 55087030 G A EGFR Silent p.P20P 0.14 TCGA-F1-6874-01 7 55221748 55221748 C - EGFR Frame_Shift_Del p.P266Hfs*14 0.24 TCGA-F1-6874-01 7 56065092 56065092 G A GBAS Missense_Mutation p.R249Q 0.24 deleterious(0.03) probably_damaging(0.931) TCGA-F1-6874-01 7 56087422 56087422 C A PSPH Missense_Mutation p.R49L 0.18 tolerated(0.28) benign(0.011) TCGA-F1-6874-01 7 6502574 6502574 A - KDELR2 3'UTR 0.19 TCGA-F1-6874-01 7 65150703 65150703 C T INTS4L2 RNA 0.36 TCGA-F1-6874-01 7 66453459 66453459 G A SBDS Nonsense_Mutation p.R218* 0.23 TCGA-F1-6874-01 7 70885960 70885960 C T WBSCR17 Silent p.N277N 0.14 TCGA-F1-6874-01 7 72413459 72413459 A G POM121 Missense_Mutation p.E711G 0.09 tolerated(0.07) benign(0.013) TCGA-F1-6874-01 7 72717909 72717909 C T NSUN5 Silent p.R353R 0.26 TCGA-F1-6874-01 7 72879861 72879862 - A BAZ1B Frame_Shift_Ins p.L993Ffs*3 0.19 TCGA-F1-6874-01 7 73510958 73510958 T C LIMK1 Silent p.C53C 0.26 TCGA-F1-6874-01 7 73768325 73768325 C T CLIP2 Missense_Mutation p.A265V 0.19 deleterious(0) probably_damaging(0.996) TCGA-F1-6874-01 7 74131266 74131268 AGA - GTF2I In_Frame_Del p.E293del 0.25 TCGA-F1-6874-01 7 76619663 76619663 G A UPK3B Intron 0.09 TCGA-F1-6874-01 7 77010626 77010626 C T GSAP Missense_Mutation p.R191K 0.29 tolerated(0.35) benign(0.009) TCGA-F1-6874-01 7 77549656 77549656 C T PHTF2 Silent p.S245S 0.22 TCGA-F1-6874-01 7 8043595 8043595 C A GLCCI1 Missense_Mutation p.S172Y 0.28 deleterious(0) probably_damaging(0.989) TCGA-F1-6874-01 7 87049339 87049339 A G ABCB4 Missense_Mutation p.M790T 0.19 tolerated(0.07) benign(0.094) TCGA-F1-6874-01 7 87778316 87778316 C T ADAM22 Nonsense_Mutation p.R504* 0.24 TCGA-F1-6874-01 7 91726403 91726403 G A AKAP9 Missense_Mutation p.R3377Q 0.15 probably_damaging(0.998) TCGA-F1-6874-01 7 92027653 92027653 C T ANKIB1 Missense_Mutation p.A887V 0.26 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-F1-6874-01 7 94740584 94740584 A G PPP1R9A Missense_Mutation p.Y470C 0.27 deleterious(0) probably_damaging(1) TCGA-F1-6874-01 7 95665061 95665061 G T DYNC1I1 Missense_Mutation p.G471V 0.13 deleterious(0) probably_damaging(1) TCGA-F1-6874-01 7 96650072 96650072 C T DLX5 Silent p.A282A 0.08 TCGA-F1-6874-01 7 97483924 97483924 A G ASNS Silent p.V402V 0.19 TCGA-F1-6874-01 7 97822375 97822375 G A LMTK2 Silent p.P866P 0.11 TCGA-F1-6874-01 7 97922776 97922776 G A BAIAP2L1 3'UTR 0.09 TCGA-F1-6874-01 7 99055926 99055926 G - ATP5J2 3'UTR 0.22 TCGA-F1-6874-01 7 99129417 99129418 - A ZKSCAN5 Frame_Shift_Ins p.N691Kfs*5 0.08 TCGA-F1-6874-01 7 99315208 99315208 C A CYP3A7 Nonsense_Mutation p.E125* 0.15 TCGA-F1-6874-01 8 101300216 101300216 T - RNF19A Frame_Shift_Del p.R63Efs*5 0.19 TCGA-F1-6874-01 8 103289349 103289349 T - UBR5 Frame_Shift_Del p.E2121Kfs*28 0.32 TCGA-F1-6874-01 8 103311747 103311747 G A UBR5 Silent p.P1045P 0.30 TCGA-F1-6874-01 8 103359305 103359305 A G UBR5 Silent p.S134S 0.27 TCGA-F1-6874-01 8 105261792 105261792 A C RIMS2 Missense_Mutation p.K1223Q 0.08 deleterious_low_confidence(0) possibly_damaging(0.778) TCGA-F1-6874-01 8 105361753 105361753 A G DCSTAMP Missense_Mutation p.S325G 0.36 tolerated(0.26) benign(0.052) TCGA-F1-6874-01 8 105503494 105503494 C A LRP12 Missense_Mutation p.D663Y 0.13 deleterious(0.04) possibly_damaging(0.653) TCGA-F1-6874-01 8 10583758 10583758 G T SOX7 Missense_Mutation p.F271L 0.32 deleterious(0) probably_damaging(0.977) TCGA-F1-6874-01 8 108348381 108348381 T - ANGPT1 Frame_Shift_Del p.N191Tfs*4 0.32 TCGA-F1-6874-01 8 110590244 110590244 C T SYBU Missense_Mutation p.R246H 0.18 deleterious(0) probably_damaging(1) TCGA-F1-6874-01 8 120252426 120252427 - T MAL2 Frame_Shift_Ins p.F110Ifs*19 0.19 TCGA-F1-6874-01 8 12957554 12957554 G T DLC1 Missense_Mutation p.S764R 0.36 tolerated(0.13) probably_damaging(0.998) TCGA-F1-6874-01 8 134072497 134072497 A G SLA Missense_Mutation p.L10P 0.15 tolerated_low_confidence(0.29) benign(0.001) TCGA-F1-6874-01 8 139606333 139606333 G A COL22A1 Silent p.A1514A 0.25 TCGA-F1-6874-01 8 141262910 141262910 G T TRAPPC9 Silent p.S897S 0.30 TCGA-F1-6874-01 8 142178528 142178528 C T DENND3 Missense_Mutation p.H647Y 0.25 tolerated(0.25) benign(0.029) TCGA-F1-6874-01 8 144297001 144297001 G A GPIHBP1 Missense_Mutation p.E99K 0.30 deleterious(0.03) possibly_damaging(0.881) TCGA-F1-6874-01 8 144331928 144331928 G A ZFP41 5'UTR 0.23 TCGA-F1-6874-01 8 144618479 144618479 C T ZC3H3 Silent p.T503T 0.20 TCGA-F1-6874-01 8 145737698 145737698 C T RECQL4 Missense_Mutation p.R1022H 0.22 deleterious(0.02) benign(0.099) TCGA-F1-6874-01 8 1851547 1851548 AG - ARHGEF10 Frame_Shift_Del p.D586Cfs*2 0.29 TCGA-F1-6874-01 8 2092936 2092936 T G MYOM2 3'UTR 0.31 TCGA-F1-6874-01 8 22864862 22864862 C T RHOBTB2 Silent p.D390D 0.28 TCGA-F1-6874-01 8 24771698 24771698 C T NEFM Missense_Mutation p.A131V 0.18 deleterious(0.04) unknown(0) TCGA-F1-6874-01 8 27950679 27950679 T G ELP3 5'UTR 0.27 TCGA-F1-6874-01 8 27954825 27954825 G A ELP3 Missense_Mutation p.D37N 0.28 tolerated(1) benign(0.003) TCGA-F1-6874-01 8 30404961 30404961 C - RBPMS 3'UTR 0.18 TCGA-F1-6874-01 8 30550568 30550568 A T GSR Missense_Mutation p.L267H 0.08 deleterious(0) probably_damaging(1) TCGA-F1-6874-01 8 30694424 30694424 G A TEX15 Missense_Mutation p.R2743W 0.33 tolerated(0.06) benign(0.032) TCGA-F1-6874-01 8 39872905 39872905 T C IDO2 Silent p.C349C 0.32 TCGA-F1-6874-01 8 41800346 41800346 C G KAT6A Missense_Mutation p.E801Q 0.25 benign(0.052) TCGA-F1-6874-01 8 42287757 42287757 C A SLC20A2 Missense_Mutation p.G512C 0.10 deleterious(0) probably_damaging(1) TCGA-F1-6874-01 8 48766746 48766746 T A PRKDC Missense_Mutation p.D2263V 0.25 probably_damaging(0.996) TCGA-F1-6874-01 8 48801690 48801690 C T PRKDC Missense_Mutation p.V1388I 0.38 benign(0.025) TCGA-F1-6874-01 8 48849059 48849059 C T PRKDC Missense_Mutation p.A378T 0.32 benign(0.3) TCGA-F1-6874-01 8 52321691 52321691 C T PXDNL Silent p.P831P 0.24 TCGA-F1-6874-01 8 55049965 55049965 G T MRPL15 Missense_Mutation p.R134M 0.26 tolerated(0.07) benign(0.403) TCGA-F1-6874-01 8 59750825 59750826 - T TOX Frame_Shift_Ins p.P247Tfs*14 0.23 TCGA-F1-6874-01 8 65493461 65493461 G A BHLHE22 Silent p.T38T 0.21 TCGA-F1-6874-01 8 68137212 68137212 C A ARFGEF1 Missense_Mutation p.W1378C 0.25 deleterious(0) probably_damaging(0.999) TCGA-F1-6874-01 8 70488249 70488249 G - SULF1 Frame_Shift_Del p.A75Pfs*8 0.29 TCGA-F1-6874-01 8 70585289 70585289 C T SLCO5A1 Missense_Mutation p.D788N 0.28 tolerated_low_confidence(0.72) benign(0.001) TCGA-F1-6874-01 8 71041044 71041044 C T NCOA2 Missense_Mutation p.A1166T 0.28 tolerated(0.28) benign(0.001) TCGA-F1-6874-01 8 75928931 75928931 C T CRISPLD1 Nonsense_Mutation p.Q287* 0.28 TCGA-F1-6874-01 8 8176151 8176151 T C SGK223 Missense_Mutation p.Y1245C 0.08 probably_damaging(0.998) TCGA-F1-6874-01 8 82605999 82605999 T C SLC10A5 Silent p.V403V 0.22 TCGA-F1-6874-01 8 95848830 95848830 T A INTS8 Missense_Mutation p.F278I 0.26 tolerated(0.15) probably_damaging(0.997) TCGA-F1-6874-01 8 96047736 96047736 A G NDUFAF6 Missense_Mutation p.K118E 0.35 tolerated(0.28) benign(0.026) TCGA-F1-6874-01 8 98699693 98699693 G A MTDH Missense_Mutation p.R202Q 0.08 deleterious(0.01) probably_damaging(0.998) TCGA-F1-6874-01 8 99168419 99168419 T C POP1 Silent p.G733G 0.28 TCGA-F1-6874-01 9 101829222 101829222 G A COL15A1 Missense_Mutation p.C1237Y 0.09 deleterious(0) probably_damaging(0.998) TCGA-F1-6874-01 9 108397407 108397407 C T FKTN Silent p.L416L 0.25 TCGA-F1-6874-01 9 114303976 114303976 G T ZNF483 Missense_Mutation p.R254M 0.27 tolerated(0.27) possibly_damaging(0.507) TCGA-F1-6874-01 9 115421888 115421888 A C KIAA1958 Missense_Mutation p.S564R 0.23 tolerated(0.06) benign(0.043) TCGA-F1-6874-01 9 116811701 116811701 C T ZNF618 Missense_Mutation p.R614C 0.33 deleterious(0.01) probably_damaging(0.975) TCGA-F1-6874-01 9 123753470 123753470 T - C5 Frame_Shift_Del p.G981Dfs*4 0.29 TCGA-F1-6874-01 9 126136078 126136078 C T CRB2 Missense_Mutation p.R1090C 0.24 tolerated(0.14) probably_damaging(0.965) TCGA-F1-6874-01 9 127995981 127995981 A G RABEPK Missense_Mutation p.T281A 0.20 deleterious(0.01) possibly_damaging(0.816) TCGA-F1-6874-01 9 128322031 128322031 G T MAPKAP1 Silent p.T243T 0.32 TCGA-F1-6874-01 9 131036199 131036199 T C GOLGA2 Missense_Mutation p.K46R 0.29 tolerated(0.17) probably_damaging(0.986) TCGA-F1-6874-01 9 131185155 131185155 C T CERCAM Missense_Mutation p.T69M 0.31 deleterious(0) probably_damaging(0.998) TCGA-F1-6874-01 9 131568256 131568256 A G TBC1D13 Missense_Mutation p.N346S 0.22 tolerated(0.49) benign(0.005) TCGA-F1-6874-01 9 135553481 135553481 C T GTF3C4 Missense_Mutation p.P159S 0.29 tolerated(0.77) benign(0.341) TCGA-F1-6874-01 9 136217870 136217870 G A RPL7A Missense_Mutation p.A214T 0.16 tolerated(0.16) benign(0.207) TCGA-F1-6874-01 9 136324225 136324225 G A ADAMTS13 Missense_Mutation p.G1403S 0.12 deleterious(0.01) probably_damaging(0.945) TCGA-F1-6874-01 9 136677299 136677299 C T VAV2 Silent p.P163P 0.25 TCGA-F1-6874-01 9 139726193 139726193 G A RABL6 Missense_Mutation p.R160Q 0.20 deleterious(0) possibly_damaging(0.768) TCGA-F1-6874-01 9 140328769 140328769 C - NOXA1 Frame_Shift_Del p.G472Afs*? 0.12 TCGA-F1-6874-01 9 33463912 33463912 G A NOL6 Nonsense_Mutation p.Q971* 0.34 TCGA-F1-6874-01 9 33464952 33464952 G A NOL6 Nonsense_Mutation p.R902* 0.33 TCGA-F1-6874-01 9 34371859 34371859 G A KIAA1161 Silent p.G327G 0.12 TCGA-F1-6874-01 9 35450159 35450159 A - ATP8B5P RNA 0.24 TCGA-F1-6874-01 9 35713239 35713239 G A TLN1 Silent p.I1102I 0.28 TCGA-F1-6874-01 9 35806228 35806228 C T NPR2 Silent p.N790N 0.34 TCGA-F1-6874-01 9 37746497 37746497 G A FRMPD1 Missense_Mutation p.V1490M 0.22 deleterious(0.05) possibly_damaging(0.66) TCGA-F1-6874-01 9 40775010 40775010 C A ZNF658 Missense_Mutation p.G89W 0.22 deleterious(0.01) possibly_damaging(0.817) TCGA-F1-6874-01 9 74364956 74364956 T A TMEM2 Intron 0.38 TCGA-F1-6874-01 9 79897181 79897181 A G VPS13A Missense_Mutation p.K1037E 0.30 deleterious(0.05) benign(0.008) TCGA-F1-6874-01 9 84531405 84531405 C T SPATA31D5P RNA 0.23 TCGA-F1-6874-01 9 84532403 84532403 C G SPATA31D5P RNA 0.17 TCGA-F1-6874-01 9 84562526 84562526 G A RP11-383M4.6 Intron 0.20 TCGA-F1-6874-01 9 84562576 84562576 G A RP11-383M4.6 Intron 0.13 TCGA-F1-6874-01 9 8499822 8499822 C T PTPRD Missense_Mutation p.R716H 0.29 deleterious(0) probably_damaging(0.98) TCGA-F1-6874-01 9 93983209 93983209 G A AUH Nonsense_Mutation p.R241* 0.32 TCGA-F1-6874-01 9 95418757 95418758 - C IPPK Frame_Shift_Ins p.E69Gfs*27 0.10 TCGA-F1-6874-01 9 97329800 97329800 G T FBP2 Intron 0.29 TCGA-F1-6874-01 X 100912702 100912702 C A ARMCX2 Splice_Site 0.29 TCGA-F1-6874-01 X 10182015 10182015 C T CLCN4 Missense_Mutation p.T624M 0.53 tolerated(0.09) possibly_damaging(0.453) TCGA-F1-6874-01 X 105450793 105450793 C T MUM1L1 Silent p.D456D 0.14 TCGA-F1-6874-01 X 111698712 111698712 C T ZCCHC16 Silent p.P252P 0.55 TCGA-F1-6874-01 X 113965833 113965833 C T HTR2C Missense_Mutation p.P56S 0.17 tolerated(0.13) benign(0.041) TCGA-F1-6874-01 X 11790306 11790307 - C MSL3 Frame_Shift_Ins p.G441Rfs*2 0.43 TCGA-F1-6874-01 X 129189948 129189948 G T BCORL1 Missense_Mutation p.R1658M 0.55 possibly_damaging(0.894) TCGA-F1-6874-01 X 149639606 149639606 C A MAMLD1 Silent p.S562S 0.62 TCGA-F1-6874-01 X 151128320 151128320 T C GABRE Missense_Mutation p.T259A 0.55 deleterious(0) possibly_damaging(0.449) TCGA-F1-6874-01 X 152225667 152225667 G - PNMA3 Frame_Shift_Del p.W89Gfs*3 0.35 TCGA-F1-6874-01 X 153278091 153278091 G A IRAK1 Missense_Mutation p.P657S 0.07 tolerated(0.16) benign(0.009) TCGA-F1-6874-01 X 15333660 15333660 A - ASB11 Frame_Shift_Del p.F23Sfs*5 0.54 TCGA-F1-6874-01 X 153663736 153663736 G A ATP6AP1 Missense_Mutation p.G363E 0.70 deleterious(0) probably_damaging(0.943) TCGA-F1-6874-01 X 153995617 153995617 C T DKC1 Silent p.Y200Y 0.56 TCGA-F1-6874-01 X 15589815 15589815 G A ACE2 Missense_Mutation p.P590L 0.69 deleterious(0) probably_damaging(0.968) TCGA-F1-6874-01 X 1584732 1584732 C T P2RY8 Silent p.A240A 0.23 TCGA-F1-6874-01 X 21874825 21874825 G A YY2 Missense_Mutation p.D75N 0.44 tolerated(0.19) benign(0.006) TCGA-F1-6874-01 X 2408192 2408192 T C ZBED1 Missense_Mutation p.E190G 0.10 tolerated(0.43) benign(0.001) TCGA-F1-6874-01 X 37984696 37984696 T C SYTL5 Missense_Mutation p.W685R 0.62 deleterious(0) probably_damaging(1) TCGA-F1-6874-01 X 54472656 54472656 C T FGD1 Silent p.T924T 0.18 TCGA-F1-6874-01 X 79698294 79698295 - T FAM46D Frame_Shift_Ins p.G88Wfs*3 0.41 TCGA-F1-6874-01 X 99657662 99657662 G A PCDH19 Missense_Mutation p.R826C 0.69 deleterious(0.02) possibly_damaging(0.836) TCGA-F1-6875-01 10 31134426 31134426 G C ZNF438 Missense_Mutation p.R651G 0.13 deleterious(0) probably_damaging(0.999) TCGA-F1-6875-01 10 90699289 90699289 C T ACTA2 Silent p.E261E 0.26 TCGA-F1-6875-01 11 113076803 113076803 C T NCAM1 Missense_Mutation p.R236W 0.44 deleterious(0) probably_damaging(0.972) TCGA-F1-6875-01 11 118886110 118886110 T C CCDC84 Missense_Mutation p.F300S 0.20 deleterious(0) probably_damaging(0.999) TCGA-F1-6875-01 11 131781508 131781508 G C NTM Missense_Mutation p.V45L 0.36 tolerated(0.13) benign(0.315) TCGA-F1-6875-01 11 134238552 134238552 G A GLB1L2 Missense_Mutation p.V302M 0.46 deleterious(0.02) possibly_damaging(0.884) TCGA-F1-6875-01 11 17409232 17409232 C T KCNJ11 Missense_Mutation p.R136H 0.35 deleterious(0) probably_damaging(0.998) TCGA-F1-6875-01 11 46400600 46400600 G A DGKZ Silent p.T1014T 0.94 TCGA-F1-6875-01 11 47188381 47188381 G A ARFGAP2 Missense_Mutation p.A421V 0.89 deleterious(0) probably_damaging(0.999) TCGA-F1-6875-01 11 47296188 47296188 T G MADD Missense_Mutation p.F46C 0.41 deleterious(0) probably_damaging(1) TCGA-F1-6875-01 11 47765704 47765704 T G FNBP4 Silent p.R419R 0.92 TCGA-F1-6875-01 11 64897313 64897313 G T SYVN1 Missense_Mutation p.H495N 0.53 tolerated(1) unknown(0) TCGA-F1-6875-01 11 7981973 7981973 C T NLRP10 Missense_Mutation p.D396N 0.39 tolerated(0.54) benign(0.006) TCGA-F1-6875-01 11 92577863 92577863 C T FAT3 Missense_Mutation p.P3777L 0.33 benign(0.426) TCGA-F1-6875-01 12 105150997 105150997 G A CHST11 Missense_Mutation p.A159T 0.81 tolerated(0.22) benign(0.006) TCGA-F1-6875-01 12 122757592 122757592 C T CLIP1 Missense_Mutation p.D1383N 0.43 deleterious(0.01) probably_damaging(0.991) TCGA-F1-6875-01 12 81101573 81101573 A G MYF6 Silent p.L25L 0.87 TCGA-F1-6875-01 12 9001452 9001452 G A A2ML1 Missense_Mutation p.R657H 0.84 tolerated(0.34) benign(0.021) TCGA-F1-6875-01 13 113526064 113526064 A G ATP11A Missense_Mutation p.T1003A 0.03 deleterious(0.04) benign(0.08) TCGA-F1-6875-01 13 93879642 93879642 G A GPC6 5'UTR 0.95 TCGA-F1-6875-01 14 20296316 20296316 A T OR4N2 Missense_Mutation p.M237L 0.14 tolerated(1) benign(0.001) TCGA-F1-6875-01 14 20502652 20502652 C A OR4K13 Missense_Mutation p.R89L 0.29 tolerated(0.08) benign(0.001) TCGA-F1-6875-01 14 51243828 51243828 A C NIN Missense_Mutation p.L169V 0.40 tolerated(0.13) probably_damaging(0.995) TCGA-F1-6875-01 14 58605379 58605379 G A C14orf37 Missense_Mutation p.T233I 0.48 tolerated(0.07) benign(0.017) TCGA-F1-6875-01 14 65207762 65207762 G A PLEKHG3 Silent p.P453P 0.30 TCGA-F1-6875-01 14 69805397 69805397 G T GALNT16 Missense_Mutation p.G333C 0.27 deleterious(0) probably_damaging(1) TCGA-F1-6875-01 14 73137899 73137899 C T DPF3 Missense_Mutation p.R340Q 0.39 tolerated_low_confidence(0.32) unknown(0) TCGA-F1-6875-01 15 29346255 29346255 C T APBA2 Silent p.P56P 0.88 TCGA-F1-6875-01 15 48539658 48539658 G T SLC12A1 Splice_Site p.X562_splice 0.35 TCGA-F1-6875-01 15 51749571 51749571 G C DMXL2 Missense_Mutation p.S2743C 0.34 deleterious(0) probably_damaging(0.967) TCGA-F1-6875-01 15 73029293 73029293 C T BBS4 Missense_Mutation p.T480M 0.39 deleterious_low_confidence(0.02) benign(0.003) TCGA-F1-6875-01 15 89391173 89391173 G A ACAN Missense_Mutation p.V546M 0.65 deleterious(0.01) unknown(0) TCGA-F1-6875-01 16 20554485 20554485 G A ACSM2B Missense_Mutation p.R461W 0.37 deleterious(0) probably_damaging(0.999) TCGA-F1-6875-01 16 27460309 27460309 C T IL21R Missense_Mutation p.P441L 0.24 tolerated(0.12) benign(0.014) TCGA-F1-6875-01 16 55880585 55880585 A G CES5A Silent p.N531N 0.05 TCGA-F1-6875-01 16 58752443 58752443 C T GOT2 Silent p.V195V 0.39 TCGA-F1-6875-01 16 61823293 61823293 T C CDH8 Silent p.E457E 0.36 TCGA-F1-6875-01 17 26851007 26851007 C T FOXN1 Missense_Mutation p.P7L 0.17 deleterious_low_confidence(0.03) benign(0.049) TCGA-F1-6875-01 17 41108328 41108328 G A AARSD1 Missense_Mutation p.R186W 0.17 deleterious(0) probably_damaging(0.996) TCGA-F1-6875-01 17 6368010 6368010 C T PITPNM3 Missense_Mutation p.G658R 0.96 deleterious(0.02) benign(0.419) TCGA-F1-6875-01 17 7577497 7577497 A C TP53 Splice_Site p.X261_splice 0.82 TCGA-F1-6875-01 17 76121030 76121030 G C TMC6 Silent p.G191G 0.87 TCGA-F1-6875-01 18 50976874 50976874 G A DCC Silent p.P1078P 0.66 TCGA-F1-6875-01 19 31040279 31040279 G A ZNF536 Silent p.P1251P 0.60 TCGA-F1-6875-01 19 49646220 49646220 G T PPFIA3 Missense_Mutation p.V902F 0.04 deleterious(0.01) benign(0.007) TCGA-F1-6875-01 19 56392961 56392961 G T NLRP4 3'UTR 0.45 TCGA-F1-6875-01 19 58118470 58118470 A C ZNF530 Missense_Mutation p.K526T 0.30 deleterious(0.01) possibly_damaging(0.844) TCGA-F1-6875-01 1 1249384 1249384 C T CPSF3L Intron 0.33 TCGA-F1-6875-01 1 1403804 1403804 C T ATAD3C Missense_Mutation p.A377V 0.45 tolerated(0.14) benign(0.266) TCGA-F1-6875-01 1 145299802 145299802 C T NBPF10 Missense_Mutation p.A284V 0.12 possibly_damaging(0.88) TCGA-F1-6875-01 1 156566248 156566248 C T GPATCH4 Missense_Mutation p.G124E 0.23 tolerated(0.43) benign(0.033) TCGA-F1-6875-01 1 158670349 158670349 G T OR6K2 Missense_Mutation p.L32I 0.21 deleterious(0.03) benign(0.38) TCGA-F1-6875-01 1 158819008 158819008 G T MNDA Missense_Mutation p.G402V 0.54 tolerated(0.27) benign(0.113) TCGA-F1-6875-01 1 16042763 16042763 A G PLEKHM2 Missense_Mutation p.E31G 0.21 deleterious(0.01) benign(0.437) TCGA-F1-6875-01 1 161599690 161599690 A T FCGR3B Missense_Mutation p.L102H 0.23 tolerated(0.44) benign(0.247) TCGA-F1-6875-01 1 16374443 16374443 C T CLCNKB Silent p.V134V 0.51 TCGA-F1-6875-01 1 22913046 22913046 C T EPHA8 Silent p.S299S 0.43 TCGA-F1-6875-01 1 42921644 42921644 C G ZMYND12 Missense_Mutation p.V9L 0.33 tolerated(0.94) benign(0.328) TCGA-F1-6875-01 1 6184073 6184073 G A CHD5 Missense_Mutation p.S1545L 0.31 tolerated(0.06) benign(0.23) TCGA-F1-6875-01 20 49209006 49209006 G T FAM65C Missense_Mutation p.L814I 0.16 deleterious(0.02) probably_damaging(1) TCGA-F1-6875-01 20 5283062 5283062 G A PROKR2 Missense_Mutation p.T260M 0.12 deleterious(0) probably_damaging(0.999) TCGA-F1-6875-01 22 21991296 21991296 T C CCDC116 Silent p.D593D 0.68 TCGA-F1-6875-01 22 23917253 23917253 C T IGLL1 Missense_Mutation p.G75S 0.58 tolerated_low_confidence(0.45) benign(0.004) TCGA-F1-6875-01 22 25264737 25264737 C G SGSM1 Silent p.A402A 0.26 TCGA-F1-6875-01 22 26173746 26173746 C A MYO18B Nonsense_Mutation p.S689* 0.64 TCGA-F1-6875-01 2 105890146 105890146 A G TGFBRAP1 Missense_Mutation p.V556A 0.70 tolerated(0.23) benign(0.007) TCGA-F1-6875-01 2 113763626 113763626 C T IL36A Missense_Mutation p.T29M 0.09 deleterious(0.02) benign(0.126) TCGA-F1-6875-01 2 131100488 131100488 G A IMP4 5'UTR 0.27 TCGA-F1-6875-01 2 133403681 133403681 G A LYPD1 Silent p.L121L 0.53 TCGA-F1-6875-01 2 216997075 216997075 C T XRCC5 Nonsense_Mutation p.Q360* 0.27 TCGA-F1-6875-01 2 218999946 218999946 G A CXCR2 Missense_Mutation p.S141N 0.52 deleterious(0) probably_damaging(0.995) TCGA-F1-6875-01 2 231152636 231152636 T C SP140 Missense_Mutation p.F559L 0.12 tolerated(0.81) benign(0.003) TCGA-F1-6875-01 2 238249716 238249716 C T COL6A3 Missense_Mutation p.D2615N 0.37 unknown(0) TCGA-F1-6875-01 2 30953607 30953607 G T CAPN13 3'UTR 0.56 TCGA-F1-6875-01 2 70165237 70165237 G A MXD1 Missense_Mutation p.D163N 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-F1-6875-01 2 70910804 70910804 G A ADD2 Silent p.A348A 0.62 TCGA-F1-6875-01 3 142681581 142681581 C T PAQR9 Missense_Mutation p.V200M 0.36 tolerated(0.14) benign(0.378) TCGA-F1-6875-01 3 145789117 145789117 G A PLOD2 Missense_Mutation p.R648W 0.38 deleterious(0) probably_damaging(0.99) TCGA-F1-6875-01 3 196778537 196778537 T C DLG1 Missense_Mutation p.E862G 0.50 deleterious(0) possibly_damaging(0.885) TCGA-F1-6875-01 3 31661247 31661247 C T STT3B Silent p.L418L 0.42 TCGA-F1-6875-01 3 45559430 45559430 C T LARS2 Nonsense_Mutation p.R694* 0.37 TCGA-F1-6875-01 3 89468434 89468434 A C EPHA3 Missense_Mutation p.K656N 0.43 deleterious(0) probably_damaging(0.997) TCGA-F1-6875-01 3 9804598 9804598 C T CAMK1 Silent p.K143K 0.44 TCGA-F1-6875-01 4 13603233 13603233 T C BOD1L1 Missense_Mutation p.D1764G 0.46 benign(0.009) TCGA-F1-6875-01 4 89772203 89772203 T C FAM13A Silent p.A325A 0.35 TCGA-F1-6875-01 5 112162891 112162891 C T APC Nonsense_Mutation p.R499* 0.77 TCGA-F1-6875-01 5 140572514 140572514 C T PCDHB10 Missense_Mutation p.A130V 0.76 deleterious_low_confidence(0) benign(0.002) TCGA-F1-6875-01 5 33455057 33455057 G A TARS Nonsense_Mutation p.W187* 0.54 TCGA-F1-6875-01 5 89770136 89770136 G A POLR3G 5'Flank 1.00 TCGA-F1-6875-01 6 135517008 135517008 G A MYB Silent p.L357L 0.33 TCGA-F1-6875-01 6 146480704 146480704 C T GRM1 Silent p.G307G 0.46 TCGA-F1-6875-01 6 37626035 37626035 C T MDGA1 Missense_Mutation p.R123H 0.38 deleterious(0.02) probably_damaging(0.998) TCGA-F1-6875-01 6 40399786 40399786 G A LRFN2 Missense_Mutation p.A356V 0.63 tolerated(0.38) benign(0.06) TCGA-F1-6875-01 7 100551536 100551536 C G MUC3A Missense_Mutation p.T96S 0.16 tolerated(0.15) possibly_damaging(0.646) TCGA-F1-6875-01 7 100553025 100553025 A G MUC3A Missense_Mutation p.Y557C 0.30 deleterious(0) probably_damaging(0.987) TCGA-F1-6875-01 7 119915579 119915579 T G KCND2 Missense_Mutation p.F298C 0.64 deleterious(0.02) probably_damaging(1) TCGA-F1-6875-01 7 141491041 141491041 C T TAS2R5 Missense_Mutation p.R294W 0.60 tolerated(0.3) benign(0) TCGA-F1-6875-01 7 43540325 43540325 G - HECW1 Frame_Shift_Del p.G1156Vfs*18 0.11 TCGA-F1-6875-01 7 44120346 44120346 G A POLM Missense_Mutation p.R120W 0.28 deleterious(0.04) benign(0.16) TCGA-F1-6875-01 7 47937792 47937792 C T PKD1L1 Splice_Site p.X689_splice 0.28 TCGA-F1-6875-01 7 813704 813704 G A HEATR2 Missense_Mutation p.E651K 0.58 tolerated(0.24) benign(0.016) TCGA-F1-6875-01 8 105436539 105436539 T C DPYS Missense_Mutation p.R391G 0.44 deleterious(0) benign(0.183) TCGA-F1-6875-01 8 105463594 105463594 G A DPYS Silent p.F101F 0.36 TCGA-F1-6875-01 8 105510027 105510027 C G LRP12 Missense_Mutation p.E251D 0.53 deleterious(0) possibly_damaging(0.56) TCGA-F1-6875-01 8 113326718 113326718 T C CSMD3 Missense_Mutation p.T2497A 0.38 tolerated(0.13) benign(0.279) TCGA-F1-6875-01 8 144940350 144940350 G C EPPK1 Missense_Mutation p.P2358A 0.02 possibly_damaging(0.574) TCGA-F1-6875-01 8 24184071 24184071 A C ADAM28 Missense_Mutation p.T299P 0.19 tolerated(0.19) possibly_damaging(0.566) TCGA-F1-6875-01 9 109686821 109686821 G A ZNF462 Missense_Mutation p.V210I 0.11 benign(0.103) TCGA-F1-6875-01 9 119188004 119188004 T C ASTN2 3'UTR 0.44 TCGA-F1-6875-01 9 120475034 120475034 C A TLR4 Missense_Mutation p.L210M 0.29 deleterious(0.01) possibly_damaging(0.823) TCGA-F1-6875-01 9 95600002 95600002 C T ANKRD19P RNA 0.58 TCGA-F1-6875-01 X 152960203 152960203 C T SLC6A8 Silent p.Y542Y 0.15 TCGA-F1-6875-01 X 23724827 23724827 A T ACOT9 Missense_Mutation p.S254T 0.92 tolerated(0.97) benign(0.001) TCGA-F1-6875-01 X 26212897 26212897 G A MAGEB6 Missense_Mutation p.G312S 0.45 tolerated(0.19) benign(0.009) TCGA-F1-6875-01 X 34648573 34648573 T C TMEM47 Missense_Mutation p.I135V 0.51 tolerated(0.57) benign(0.002) TCGA-F1-6875-01 X 54959866 54959866 T C PFKFB1 Silent p.E462E 0.19 TCGA-F1-A448-01 10 103339364 103339364 A G POLL Missense_Mutation p.M525T 0.08 deleterious(0) probably_damaging(0.964) TCGA-F1-A448-01 10 112641116 112641116 G A PDCD4 Missense_Mutation p.A57T 0.10 tolerated(0.19) probably_damaging(0.998) TCGA-F1-A448-01 10 119798646 119798647 - T RAB11FIP2 Frame_Shift_Ins p.D368Rfs*2 0.09 TCGA-F1-A448-01 10 123842651 123842651 G A TACC2 Silent p.P212P 0.09 TCGA-F1-A448-01 10 124348577 124348577 A G DMBT1 Missense_Mutation p.N634S 0.09 tolerated(0.43) unknown(0) TCGA-F1-A448-01 10 124348581 124348581 T C DMBT1 Silent p.D635D 0.09 TCGA-F1-A448-01 10 128974382 128974382 C T FAM196A Missense_Mutation p.R93H 0.12 deleterious(0) probably_damaging(0.998) TCGA-F1-A448-01 10 13174160 13174160 C T OPTN Silent p.L499L 0.08 TCGA-F1-A448-01 10 135026342 135026342 C T KNDC1 Silent p.C1453C 0.16 TCGA-F1-A448-01 10 15145637 15145637 C T RPP38 Silent p.H108H 0.21 TCGA-F1-A448-01 10 15590532 15590532 A G ITGA8 Silent p.C934C 0.15 TCGA-F1-A448-01 10 25887710 25887710 C A GPR158 Missense_Mutation p.P1052H 0.12 tolerated(0.14) benign(0.004) TCGA-F1-A448-01 10 30315304 30315304 C T KIAA1462 Missense_Mutation p.R1258H 0.08 deleterious(0.02) possibly_damaging(0.883) TCGA-F1-A448-01 10 50959982 50959982 C T OGDHL Missense_Mutation p.D214N 0.14 tolerated(0.21) benign(0.031) TCGA-F1-A448-01 10 51748492 51748492 C T AGAP6 Missense_Mutation p.T6I 0.14 deleterious_low_confidence(0) possibly_damaging(0.86) TCGA-F1-A448-01 10 6002342 6002342 G T IL15RA Missense_Mutation p.H191N 0.05 tolerated(0.27) probably_damaging(0.922) TCGA-F1-A448-01 10 63170171 63170171 T C TMEM26 Missense_Mutation p.Q339R 0.10 tolerated(0.1) benign(0) TCGA-F1-A448-01 10 71139659 71139659 G A HK1 Missense_Mutation p.R362H 0.05 tolerated(0.12) benign(0.01) TCGA-F1-A448-01 10 72285775 72285775 G A PALD1 Missense_Mutation p.G23D 0.11 tolerated(0.06) benign(0.057) TCGA-F1-A448-01 10 73464803 73464803 C T CDH23 Missense_Mutation p.R549C 0.07 deleterious(0.01) probably_damaging(0.954) TCGA-F1-A448-01 10 74034058 74034058 G A DDIT4 Silent p.R28R 0.07 TCGA-F1-A448-01 10 75482256 75482256 A G RP11-574K11.28 RNA 0.10 TCGA-F1-A448-01 10 90984920 90984920 G T LIPA Missense_Mutation p.P202T 0.04 deleterious(0) probably_damaging(0.999) TCGA-F1-A448-01 10 91497987 91497987 A - KIF20B Frame_Shift_Del p.N1092Mfs*11 0.13 TCGA-F1-A448-01 10 95287825 95287825 T C CEP55 Missense_Mutation p.L437P 0.12 deleterious(0) possibly_damaging(0.726) TCGA-F1-A448-01 10 96602617 96602617 C T CYP2C19 Missense_Mutation p.R329C 0.11 tolerated(0.09) benign(0.06) TCGA-F1-A448-01 11 101323563 101323563 G A TRPC6 3'UTR 0.17 TCGA-F1-A448-01 11 101375313 101375313 C A TRPC6 Silent p.V129V 0.10 TCGA-F1-A448-01 11 104034581 104034581 C T PDGFD Silent p.P25P 0.15 TCGA-F1-A448-01 11 105732777 105732777 A - GRIA4 Frame_Shift_Del p.A174Qfs*25 0.09 TCGA-F1-A448-01 11 108383972 108383972 G A EXPH5 Silent p.N754N 0.16 TCGA-F1-A448-01 11 111425294 111425294 G A LAYN Missense_Mutation p.A192T 0.09 tolerated(1) benign(0) TCGA-F1-A448-01 11 111623020 111623020 C A PPP2R1B Missense_Mutation p.D401Y 0.12 deleterious(0) benign(0.199) TCGA-F1-A448-01 11 113711447 113711447 C T USP28 Missense_Mutation p.R136H 0.16 deleterious(0.02) possibly_damaging(0.893) TCGA-F1-A448-01 11 118133655 118133655 A G MPZL2 Silent p.P72P 0.13 TCGA-F1-A448-01 11 118374938 118374939 - A KMT2A Frame_Shift_Ins p.N2779Kfs*2 0.09 TCGA-F1-A448-01 11 118773299 118773299 C T BCL9L Missense_Mutation p.A385T 0.14 benign(0) TCGA-F1-A448-01 11 121174117 121174117 T - SC5D Frame_Shift_Del p.F13Lfs*23 0.08 TCGA-F1-A448-01 11 123995046 123995046 G A VWA5A Intron 0.20 TCGA-F1-A448-01 11 126318959 126318959 A G KIRREL3 Silent p.C314C 0.11 TCGA-F1-A448-01 11 1628842 1628842 C T KRTAP5-3 3'UTR 0.07 TCGA-F1-A448-01 11 19077802 19077802 A C MRGPRX2 Missense_Mutation p.F50V 0.07 tolerated(1) benign(0) TCGA-F1-A448-01 11 1908026 1908026 C T LSP1 Missense_Mutation p.A389V 0.10 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-F1-A448-01 11 20385709 20385709 C A HTATIP2 Intron 0.08 TCGA-F1-A448-01 11 20648274 20648274 G A SLC6A5 Silent p.T427T 0.13 TCGA-F1-A448-01 11 26681879 26681879 G A ANO3 Missense_Mutation p.R945Q 0.05 tolerated(0.27) probably_damaging(0.999) TCGA-F1-A448-01 11 46792495 46792495 C T CKAP5 Missense_Mutation p.R1010H 0.17 deleterious(0.01) probably_damaging(0.993) TCGA-F1-A448-01 11 47364468 47364468 G A MYBPC3 Missense_Mutation p.T457M 0.13 deleterious(0.02) benign(0.149) TCGA-F1-A448-01 11 47431938 47431938 G A SLC39A13 Missense_Mutation p.R98H 0.07 tolerated(0.06) benign(0.035) TCGA-F1-A448-01 11 47611586 47611586 G A C1QTNF4 Silent p.Y259Y 0.10 TCGA-F1-A448-01 11 48177365 48177365 G A PTPRJ Missense_Mutation p.R1081H 0.08 deleterious(0) probably_damaging(1) TCGA-F1-A448-01 11 5510803 5510803 T A OR52D1 Silent p.P289P 0.19 TCGA-F1-A448-01 11 55340006 55340006 A T OR4C16 Missense_Mutation p.S135C 0.12 deleterious(0) possibly_damaging(0.738) TCGA-F1-A448-01 11 55433006 55433006 G A OR4C6 Missense_Mutation p.V122M 0.14 deleterious_low_confidence(0.04) benign(0.223) TCGA-F1-A448-01 11 55541274 55541274 G A OR5D13 Missense_Mutation p.A121T 0.06 deleterious(0) possibly_damaging(0.555) TCGA-F1-A448-01 11 56310561 56310561 G T OR5M11 Missense_Mutation p.P58H 0.05 deleterious(0.01) probably_damaging(1) TCGA-F1-A448-01 11 61563792 61563792 G A FEN1 Missense_Mutation p.R320Q 0.15 deleterious(0) possibly_damaging(0.707) TCGA-F1-A448-01 11 618676 618676 G T CDHR5 Missense_Mutation p.P628H 0.23 deleterious(0.04) probably_damaging(0.987) TCGA-F1-A448-01 11 62397116 62397116 C T GANAB Missense_Mutation p.G615D 0.07 deleterious(0.01) probably_damaging(0.983) TCGA-F1-A448-01 11 62416160 62416160 C T INTS5 Silent p.P464P 0.19 TCGA-F1-A448-01 11 62569046 62569046 G A NXF1 Missense_Mutation p.R233C 0.18 deleterious(0.04) benign(0.077) TCGA-F1-A448-01 11 64572093 64572093 G - MEN1 Frame_Shift_Del p.R521Gfs*43 0.25 TCGA-F1-A448-01 11 65357965 65357965 T C EHBP1L1 Silent p.G1395G 0.12 TCGA-F1-A448-01 11 67377028 67377028 G - NDUFV1 Frame_Shift_Del p.G146Afs*36 0.10 TCGA-F1-A448-01 11 6789969 6789969 T C OR2AG2 Missense_Mutation p.T74A 0.10 tolerated(0.21) benign(0.011) TCGA-F1-A448-01 11 69514175 69514175 A G FGF19 Missense_Mutation p.L169P 0.15 deleterious(0) probably_damaging(0.918) TCGA-F1-A448-01 11 7111134 7111134 C T RBMXL2 Silent p.D261D 0.10 TCGA-F1-A448-01 11 71726491 71726491 T - NUMA1 Frame_Shift_Del p.A687Qfs*25 0.11 TCGA-F1-A448-01 11 71946233 71946233 G A INPPL1 Missense_Mutation p.G830D 0.11 deleterious(0) probably_damaging(0.989) TCGA-F1-A448-01 11 75438523 75438523 C T MOGAT2 Missense_Mutation p.A105V 0.11 tolerated(0.27) benign(0.053) TCGA-F1-A448-01 11 76826541 76826541 G A CAPN5 Missense_Mutation p.G267D 0.19 tolerated(0.1) probably_damaging(0.989) TCGA-F1-A448-01 11 788350 788350 C A CEND1 Missense_Mutation p.S76I 0.09 deleterious_low_confidence(0) benign(0.204) TCGA-F1-A448-01 11 88961040 88961040 G A TYR Missense_Mutation p.M362I 0.08 deleterious(0.01) benign(0.338) TCGA-F1-A448-01 11 9838486 9838486 C A SBF2 Missense_Mutation p.K1293N 0.14 tolerated(0.12) benign(0.091) TCGA-F1-A448-01 12 100453818 100453818 G T UHRF1BP1L Missense_Mutation p.P518Q 0.10 deleterious(0) probably_damaging(1) TCGA-F1-A448-01 12 107712874 107712874 C T BTBD11 Missense_Mutation p.P53S 0.19 tolerated(0.41) unknown(0) TCGA-F1-A448-01 12 109292531 109292531 A G DAO Missense_Mutation p.T258A 0.09 tolerated(0.53) benign(0.049) TCGA-F1-A448-01 12 114832616 114832616 T - TBX5 Frame_Shift_Del p.N198Ifs*15 0.09 TCGA-F1-A448-01 12 121868159 121868159 T C KDM2B Missense_Mutation p.I1315V 0.14 tolerated(0.09) probably_damaging(0.963) TCGA-F1-A448-01 12 133220551 133220551 G T POLE Missense_Mutation p.L1388I 0.15 deleterious(0) probably_damaging(0.96) TCGA-F1-A448-01 12 22065846 22065846 C T ABCC9 Missense_Mutation p.R324H 0.17 tolerated(0.95) benign(0.001) TCGA-F1-A448-01 12 29709910 29709910 G A TMTC1 Missense_Mutation p.A519V 0.08 tolerated(0.07) probably_damaging(0.996) TCGA-F1-A448-01 12 33532788 33532788 C T SYT10 Silent p.T493T 0.07 TCGA-F1-A448-01 12 44193276 44193276 T - TWF1 Frame_Shift_Del p.K136Nfs*12 0.36 TCGA-F1-A448-01 12 4446292 4446292 A G C12orf5 Missense_Mutation p.H53R 0.07 deleterious(0.05) benign(0.111) TCGA-F1-A448-01 12 46316903 46316903 A G SCAF11 Missense_Mutation p.M1314T 0.11 tolerated(0.17) benign(0.006) TCGA-F1-A448-01 12 49497522 49497522 C T LMBR1L Nonsense_Mutation p.W170* 0.10 TCGA-F1-A448-01 12 50048743 50048744 - A FMNL3 Frame_Shift_Ins p.E304* 0.12 TCGA-F1-A448-01 12 50501571 50501571 G A GPD1 Silent p.A278A 0.09 TCGA-F1-A448-01 12 5154130 5154130 C T KCNA5 Missense_Mutation p.P273S 0.13 deleterious(0) probably_damaging(0.998) TCGA-F1-A448-01 12 53012125 53012125 C T KRT73 Missense_Mutation p.A62T 0.07 tolerated(0.11) benign(0.007) TCGA-F1-A448-01 12 53207645 53207645 A G KRT4 Silent p.A66A 0.08 TCGA-F1-A448-01 12 53514608 53514608 C T SOAT2 Missense_Mutation p.H360Y 0.09 deleterious(0) probably_damaging(0.998) TCGA-F1-A448-01 12 56216252 56216252 A G DNAJC14 Silent p.A601A 0.15 TCGA-F1-A448-01 12 56526118 56526118 T C ESYT1 Splice_Site p.X328_splice 0.11 TCGA-F1-A448-01 12 57111683 57111683 T C NACA Intron 0.06 TCGA-F1-A448-01 12 58089742 58089742 C T OS9 Intron 0.21 TCGA-F1-A448-01 12 66814538 66814538 G A GRIP1 Silent p.L548L 0.09 TCGA-F1-A448-01 12 6933431 6933431 G A GPR162 Missense_Mutation p.V123I 0.06 tolerated(0.16) probably_damaging(0.968) TCGA-F1-A448-01 12 7290621 7290621 T C CLSTN3 Silent p.L427L 0.09 TCGA-F1-A448-01 12 75816793 75816793 A - GLIPR1L2 Intron 0.10 TCGA-F1-A448-01 12 88524079 88524079 T - CEP290 Frame_Shift_Del p.N212Tfs*14 0.08 TCGA-F1-A448-01 12 95907721 95907721 T C METAP2 3'UTR 0.08 TCGA-F1-A448-01 13 101277794 101277794 G A TMTC4 Missense_Mutation p.R611C 0.14 deleterious(0.05) benign(0.247) TCGA-F1-A448-01 13 101936304 101936304 G A NALCN Missense_Mutation p.R372C 0.12 tolerated(0.18) possibly_damaging(0.835) TCGA-F1-A448-01 13 108861173 108861173 C T LIG4 Missense_Mutation p.R815H 0.08 tolerated(0.15) benign(0) TCGA-F1-A448-01 13 114498133 114498133 A T TMEM255B Missense_Mutation p.I89F 0.31 deleterious(0) probably_damaging(0.962) TCGA-F1-A448-01 13 20304416 20304416 C T PSPC1 Missense_Mutation p.R374Q 0.10 deleterious(0.05) possibly_damaging(0.59) TCGA-F1-A448-01 13 37679009 37679009 T C CSNK1A1L Missense_Mutation p.T129A 0.08 tolerated_low_confidence(0.18) benign(0.067) TCGA-F1-A448-01 13 61987422 61987422 G - PCDH20 Frame_Shift_Del p.Y271Tfs*2 0.11 TCGA-F1-A448-01 13 88328996 88328996 C T SLITRK5 Silent p.R451R 0.12 TCGA-F1-A448-01 14 100375723 100375723 G T EML1 Silent p.T401T 0.11 TCGA-F1-A448-01 14 103180949 103180949 C T RCOR1 Nonsense_Mutation p.R350* 0.14 TCGA-F1-A448-01 14 104206331 104206331 G T PPP1R13B Missense_Mutation p.Q808K 0.07 tolerated(0.75) benign(0.01) TCGA-F1-A448-01 14 104481129 104481129 G A TDRD9 Missense_Mutation p.R725Q 0.07 tolerated(0.65) benign(0.004) TCGA-F1-A448-01 14 23019591 23019591 G A TRAC Missense_Mutation p.R137Q 0.16 tolerated(0.08) possibly_damaging(0.511) TCGA-F1-A448-01 14 24029052 24029053 - G AP1G2 Frame_Shift_Ins p.L755Pfs*21 0.13 TCGA-F1-A448-01 14 24737770 24737770 C T RABGGTA Missense_Mutation p.R319H 0.05 tolerated(0.19) possibly_damaging(0.471) TCGA-F1-A448-01 14 26939637 26939637 G A NOVA1 Intron 0.17 TCGA-F1-A448-01 14 35231352 35231352 C T BAZ1A Missense_Mutation p.R1285H 0.05 tolerated_low_confidence(0.1) benign(0.097) TCGA-F1-A448-01 14 38724284 38724284 G A CLEC14A Missense_Mutation p.P315L 0.08 tolerated(0.06) benign(0.006) TCGA-F1-A448-01 14 45414684 45414684 G A KLHL28 Missense_Mutation p.R150C 0.06 tolerated(0.09) benign(0.001) TCGA-F1-A448-01 14 47504254 47504254 G A MDGA2 Silent p.N593N 0.10 TCGA-F1-A448-01 14 51087357 51087357 T G ATL1 Missense_Mutation p.I301M 0.07 deleterious(0.02) benign(0.303) TCGA-F1-A448-01 14 52898997 52898997 T - TXNDC16 3'UTR 0.09 TCGA-F1-A448-01 14 53558555 53558555 G A DDHD1 Missense_Mutation p.H413Y 0.10 deleterious(0) possibly_damaging(0.839) TCGA-F1-A448-01 14 65262292 65262292 G A SPTB Silent p.T469T 0.14 TCGA-F1-A448-01 14 74086200 74086200 T G ACOT6 Missense_Mutation p.L94R 0.12 deleterious(0.02) probably_damaging(0.975) TCGA-F1-A448-01 14 75562092 75562092 C T NEK9 Missense_Mutation p.G739D 0.11 tolerated(0.07) probably_damaging(0.947) TCGA-F1-A448-01 14 89088957 89088957 G A EML5 Silent p.C1668C 0.06 TCGA-F1-A448-01 14 91681783 91681783 C T C14orf159 Silent p.C533C 0.05 TCGA-F1-A448-01 14 93176079 93176079 T C LGMN Missense_Mutation p.M320V 0.05 tolerated(0.25) benign(0.045) TCGA-F1-A448-01 15 30024704 30024704 A - TJP1 Frame_Shift_Del p.F650Lfs*4 0.16 TCGA-F1-A448-01 15 32916446 32916446 T - ARHGAP11A Frame_Shift_Del p.F125Lfs*18 0.12 TCGA-F1-A448-01 15 35273959 35273959 T C ZNF770 Silent p.Q559Q 0.17 TCGA-F1-A448-01 15 40005706 40005706 C T FSIP1 Missense_Mutation p.R376H 0.05 deleterious(0) probably_damaging(1) TCGA-F1-A448-01 15 40282508 40282508 T - EIF2AK4 Frame_Shift_Del p.L856Wfs*7 0.09 TCGA-F1-A448-01 15 40565133 40565133 G A PAK6 Missense_Mutation p.E475K 0.08 deleterious(0) possibly_damaging(0.564) TCGA-F1-A448-01 15 41961400 41961400 G A MGA Missense_Mutation p.R103H 0.10 deleterious(0) probably_damaging(0.999) TCGA-F1-A448-01 15 42749327 42749327 C A ZNF106 Missense_Mutation p.G26V 0.17 tolerated(0.06) possibly_damaging(0.886) TCGA-F1-A448-01 15 59553620 59553620 G A MYO1E Missense_Mutation p.A79V 0.18 deleterious(0) probably_damaging(0.999) TCGA-F1-A448-01 15 62165561 62165561 C A VPS13C Missense_Mutation p.G3488C 0.09 deleterious(0.01) benign(0.416) TCGA-F1-A448-01 15 63029196 63029196 G A TLN2 Missense_Mutation p.V1160M 0.17 deleterious(0) possibly_damaging(0.878) TCGA-F1-A448-01 15 73615926 73615926 C T HCN4 Silent p.A836A 0.07 TCGA-F1-A448-01 15 75013992 75013992 C T CYP1A1 Missense_Mutation p.A298T 0.11 tolerated(0.51) benign(0.053) TCGA-F1-A448-01 15 76161330 76161330 A G UBE2Q2 Silent p.E142E 0.07 TCGA-F1-A448-01 15 77906539 77906539 G A LINGO1 Silent p.G570G 0.07 TCGA-F1-A448-01 15 85121256 85121256 C T LINC00933 RNA 0.08 TCGA-F1-A448-01 15 90784210 90784210 C T GDPGP1 Nonsense_Mutation p.Q24* 0.09 TCGA-F1-A448-01 15 93563304 93563304 T C CHD2 Missense_Mutation p.W1657R 0.11 deleterious(0.04) probably_damaging(0.969) TCGA-F1-A448-01 16 11362892 11362892 A G TNP2 Silent p.S76S 0.08 TCGA-F1-A448-01 16 11846617 11846619 GGA - ZC3H7A In_Frame_Del p.S878del 0.14 TCGA-F1-A448-01 16 12662446 12662446 G A SNX29 Missense_Mutation p.R801Q 0.09 tolerated_low_confidence(0.12) benign(0.421) TCGA-F1-A448-01 16 1825647 1825647 G A EME2 Silent p.V247V 0.09 TCGA-F1-A448-01 16 20439171 20439171 T C ACSM5 Missense_Mutation p.V328A 0.07 deleterious(0.02) possibly_damaging(0.517) TCGA-F1-A448-01 16 2138301 2138301 G A TSC2 Missense_Mutation p.R1745H 0.16 deleterious(0) probably_damaging(0.999) TCGA-F1-A448-01 16 2226331 2226331 G A TRAF7 Silent p.A648A 0.14 TCGA-F1-A448-01 16 22358158 22358158 C T CDR2 3'UTR 0.09 TCGA-F1-A448-01 16 23703318 23703320 AAG - ERN2 In_Frame_Del p.F829del 0.20 TCGA-F1-A448-01 16 24567183 24567183 C T RBBP6 Missense_Mutation p.T160M 0.07 deleterious_low_confidence(0.02) probably_damaging(0.99) TCGA-F1-A448-01 16 28883527 28883527 G - SH2B1 Frame_Shift_Del p.E512Sfs*31 0.10 TCGA-F1-A448-01 16 28914189 28914189 C A ATP2A1 Missense_Mutation p.L901M 0.19 tolerated(0.12) probably_damaging(1) TCGA-F1-A448-01 16 29825697 29825697 G A PRRT2 Missense_Mutation p.R308H 0.07 deleterious(0) probably_damaging(1) TCGA-F1-A448-01 16 3016424 3016424 C T KREMEN2 Missense_Mutation p.R154C 0.06 deleterious(0.01) probably_damaging(0.978) TCGA-F1-A448-01 16 3021117 3021117 G A PAQR4 Intron 0.15 TCGA-F1-A448-01 16 30410095 30410095 A G ZNF48 Silent p.P508P 0.21 TCGA-F1-A448-01 16 30793647 30793647 C T ZNF629 Missense_Mutation p.G668R 0.27 deleterious(0.02) probably_damaging(0.982) TCGA-F1-A448-01 16 30998167 30998167 G - HSD3B7 Frame_Shift_Del p.L182Cfs*4 0.12 TCGA-F1-A448-01 16 31382513 31382513 C T ITGAX Missense_Mutation p.R607W 0.09 deleterious(0.04) benign(0.433) TCGA-F1-A448-01 16 3165484 3165484 G A ZNF205 Silent p.S62S 0.09 TCGA-F1-A448-01 16 4386972 4386972 C - GLIS2 Frame_Shift_Del p.D343Tfs*181 0.16 TCGA-F1-A448-01 16 57088736 57088736 A - NLRC5 Frame_Shift_Del p.K1195Rfs*38 0.12 TCGA-F1-A448-01 16 66975082 66975082 G A CES2 Missense_Mutation p.C355Y 0.13 deleterious(0) probably_damaging(0.994) TCGA-F1-A448-01 16 67165190 67165190 T C C16orf70 Missense_Mutation p.V78A 0.12 tolerated(0.14) benign(0.085) TCGA-F1-A448-01 16 69727814 69727814 G A NFAT5 Silent p.S1362S 0.14 TCGA-F1-A448-01 16 70497629 70497629 C T FUK Silent p.N62N 0.09 TCGA-F1-A448-01 16 71509154 71509154 C T ZNF19 Silent p.E432E 0.15 TCGA-F1-A448-01 16 75263597 75263597 G A BCAR1 Missense_Mutation p.R855C 0.07 deleterious(0.04) probably_damaging(0.999) TCGA-F1-A448-01 16 75665396 75665396 G A KARS Silent p.P418P 0.19 TCGA-F1-A448-01 16 81962215 81962215 A C PLCG2 Missense_Mutation p.N856T 0.10 tolerated(0.4) benign(0.08) TCGA-F1-A448-01 16 88747938 88747938 G T SNAI3 Silent p.A87A 0.11 TCGA-F1-A448-01 16 89761420 89761420 C G CDK10 Missense_Mutation p.L292V 0.09 deleterious(0.05) possibly_damaging(0.501) TCGA-F1-A448-01 16 89986083 89986083 C T MC1R Silent p.A139A 0.08 TCGA-F1-A448-01 17 10358320 10358320 G A MYH4 Silent p.R791R 0.08 TCGA-F1-A448-01 17 11540071 11540071 A G DNAH9 Missense_Mutation p.S586G 0.06 benign(0.002) TCGA-F1-A448-01 17 11757429 11757429 G A DNAH9 Missense_Mutation p.R3206Q 0.26 possibly_damaging(0.532) TCGA-F1-A448-01 17 16455518 16455518 T C ZNF287 Silent p.K646K 0.11 TCGA-F1-A448-01 17 17124808 17124808 G A FLCN Intron 0.13 TCGA-F1-A448-01 17 17250222 17250222 C T NT5M Silent p.D216D 0.14 TCGA-F1-A448-01 17 18022483 18022483 C T MYO15A Silent p.R123R 0.22 TCGA-F1-A448-01 17 18881958 18881958 C T FAM83G Missense_Mutation p.A341T 0.04 deleterious(0.01) probably_damaging(0.979) TCGA-F1-A448-01 17 19646611 19646611 C T ALDH3A1 Missense_Mutation p.V110I 0.08 tolerated(1) benign(0.001) TCGA-F1-A448-01 17 27031396 27031396 G T PROCA1 Silent p.S95S 0.09 TCGA-F1-A448-01 17 27994186 27994186 T C SSH2 Missense_Mutation p.M262V 0.09 deleterious(0) probably_damaging(0.998) TCGA-F1-A448-01 17 31618506 31618506 G A ASIC2 Missense_Mutation p.R210C 0.07 deleterious(0) probably_damaging(1) TCGA-F1-A448-01 17 35538197 35538197 T C ACACA Missense_Mutation p.Q1626R 0.08 tolerated(0.08) probably_damaging(0.975) TCGA-F1-A448-01 17 36927291 36927291 C T PIP4K2B Missense_Mutation p.V348I 0.10 tolerated(0.32) benign(0.274) TCGA-F1-A448-01 17 37099038 37099038 A - FBXO47 Frame_Shift_Del p.L359Wfs*18 0.11 TCGA-F1-A448-01 17 39155890 39155890 C T KRTAP3-2 Silent p.Q72Q 0.16 TCGA-F1-A448-01 17 39580159 39580159 G A KRT37 Intron 0.15 TCGA-F1-A448-01 17 39659000 39659000 A G KRT13 Missense_Mutation p.I321T 0.14 deleterious(0) probably_damaging(0.969) TCGA-F1-A448-01 17 40120334 40120334 C T CNP Silent p.D84D 0.13 TCGA-F1-A448-01 17 40822661 40822661 C T PLEKHH3 Missense_Mutation p.R495H 0.11 deleterious(0) unknown(0) TCGA-F1-A448-01 17 41245760 41245760 G A BRCA1 Silent p.L596L 0.19 TCGA-F1-A448-01 17 45016106 45016106 G A GOSR2 Intron 0.09 TCGA-F1-A448-01 17 45891131 45891131 C T OSBPL7 Missense_Mutation p.G474E 0.11 tolerated(0.11) possibly_damaging(0.475) TCGA-F1-A448-01 17 46148796 46148796 G A CBX1 3'UTR 0.12 TCGA-F1-A448-01 17 4647738 4647738 C T ZMYND15 Silent p.D553D 0.06 TCGA-F1-A448-01 17 47041735 47041735 A G GIP Missense_Mutation p.M65T 0.06 deleterious(0) possibly_damaging(0.816) TCGA-F1-A448-01 17 47115628 47115628 G A IGF2BP1 Missense_Mutation p.R167H 0.06 deleterious(0.03) possibly_damaging(0.551) TCGA-F1-A448-01 17 4806206 4806206 C T C17orf107 3'UTR 0.14 TCGA-F1-A448-01 17 50212365 50212365 A C CA10 Intron 0.29 TCGA-F1-A448-01 17 57287463 57287463 G A SMG8 Nonsense_Mutation p.W17* 0.07 TCGA-F1-A448-01 17 57334502 57334502 A C GDPD1 Missense_Mutation p.K129N 0.14 tolerated(0.35) benign(0.004) TCGA-F1-A448-01 17 59989372 59989372 G A INTS2 Missense_Mutation p.R245C 0.11 tolerated(0.13) probably_damaging(0.999) TCGA-F1-A448-01 17 60689890 60689890 A G TLK2 Silent p.S739S 0.13 TCGA-F1-A448-01 17 65041002 65041002 G A CACNG1 Missense_Mutation p.G76R 0.16 deleterious(0.01) probably_damaging(0.997) TCGA-F1-A448-01 17 6927857 6927858 - C BCL6B Frame_Shift_Ins p.S183Qfs*6 0.10 TCGA-F1-A448-01 17 70645064 70645064 G A SLC39A11 Silent p.A276A 0.10 TCGA-F1-A448-01 17 71232288 71232288 G A C17orf80 Missense_Mutation p.V223M 0.18 tolerated(0.36) possibly_damaging(0.667) TCGA-F1-A448-01 17 7157951 7157953 GAG - ELP5 In_Frame_Del p.E97del 0.10 TCGA-F1-A448-01 17 72527553 72527553 T C CD300LB Silent p.A16A 0.13 TCGA-F1-A448-01 17 729235 729235 C T NXN Silent p.R148R 0.24 TCGA-F1-A448-01 17 7330828 7330828 A G C17orf74 3'UTR 0.11 TCGA-F1-A448-01 17 7357799 7357799 G A CHRNB1 Missense_Mutation p.R335H 0.07 deleterious(0.03) benign(0.221) TCGA-F1-A448-01 17 74042188 74042188 C T SRP68 Silent p.Q410Q 0.08 TCGA-F1-A448-01 17 76968444 76968444 G A LGALS3BP Silent p.A324A 0.07 TCGA-F1-A448-01 17 77081752 77081752 G A ENGASE Missense_Mutation p.C584Y 0.17 tolerated(0.45) benign(0.029) TCGA-F1-A448-01 17 77758255 77758256 - T CBX2 Frame_Shift_Ins p.G339Wfs*74 0.19 TCGA-F1-A448-01 17 78078703 78078703 C T GAA Silent p.R106R 0.12 TCGA-F1-A448-01 17 7847956 7847956 A C CNTROB Silent p.P578P 0.08 TCGA-F1-A448-01 17 79478090 79478090 T C ACTG1 Missense_Mutation p.M283V 0.05 deleterious_low_confidence(0.01) benign(0.43) TCGA-F1-A448-01 17 80019844 80019844 C T DUS1L Missense_Mutation p.G176R 0.08 deleterious(0) probably_damaging(0.999) TCGA-F1-A448-01 17 80477947 80477947 G A FOXK2 Silent p.S61S 0.07 TCGA-F1-A448-01 18 13746253 13746253 A - RNMT Frame_Shift_Del p.T394Hfs*19 0.09 TCGA-F1-A448-01 18 25573538 25573538 G T CDH2 Missense_Mutation p.L362I 0.11 deleterious(0.02) probably_damaging(0.999) TCGA-F1-A448-01 18 30260195 30260195 C T KLHL14 Missense_Mutation p.A509T 0.09 deleterious(0.01) probably_damaging(0.956) TCGA-F1-A448-01 18 30349901 30349901 G A KLHL14 Silent p.F218F 0.22 TCGA-F1-A448-01 18 34298165 34298165 G A FHOD3 Silent p.A793A 0.08 TCGA-F1-A448-01 18 45371785 45371785 A - SMAD2 Frame_Shift_Del p.F402Lfs*7 0.17 TCGA-F1-A448-01 18 45423026 45423026 A G SMAD2 Silent p.N34N 0.14 TCGA-F1-A448-01 18 54424291 54424291 C T WDR7 Missense_Mutation p.R823C 0.12 deleterious(0.02) benign(0.167) TCGA-F1-A448-01 18 77896267 77896267 C T ADNP2 Missense_Mutation p.R991W 0.08 deleterious(0) possibly_damaging(0.857) TCGA-F1-A448-01 18 7888203 7888203 T G PTPRM Missense_Mutation p.F99C 0.13 deleterious(0) probably_damaging(1) TCGA-F1-A448-01 18 8113535 8113535 G A PTPRM Silent p.T636T 0.08 TCGA-F1-A448-01 19 10662783 10662783 G A ATG4D Missense_Mutation p.D370N 0.10 tolerated(0.51) benign(0.01) TCGA-F1-A448-01 19 10664749 10664749 G A KRI1 Missense_Mutation p.L670F 0.09 deleterious(0.02) probably_damaging(0.974) TCGA-F1-A448-01 19 11032110 11032110 A G CARM1 Missense_Mutation p.I559V 0.13 tolerated_low_confidence(0.06) benign(0.073) TCGA-F1-A448-01 19 11129651 11129651 G A SMARCA4 Silent p.A819A 0.07 TCGA-F1-A448-01 19 11287378 11287378 G - KANK2 Frame_Shift_Del p.Q554Sfs*45 0.14 TCGA-F1-A448-01 19 11557919 11557919 G A PRKCSH Missense_Mutation p.A265T 0.17 tolerated(0.48) benign(0.003) TCGA-F1-A448-01 19 12462035 12462036 CA - ZNF442 Frame_Shift_Del p.C121Wfs*10 0.08 TCGA-F1-A448-01 19 13930229 13930229 C T ZSWIM4 Silent p.T544T 0.20 TCGA-F1-A448-01 19 14088816 14088816 G A RFX1 Missense_Mutation p.T306M 0.06 deleterious(0) possibly_damaging(0.906) TCGA-F1-A448-01 19 1430254 1430254 C - DAZAP1 Frame_Shift_Del p.P257Rfs*78 0.13 TCGA-F1-A448-01 19 15997110 15997110 G A CYP4F2 Silent p.D309D 0.09 TCGA-F1-A448-01 19 16319980 16319980 A G AP1M1 Missense_Mutation p.N180D 0.22 tolerated(0.13) benign(0.308) TCGA-F1-A448-01 19 19162758 19162758 C T ARMC6 Missense_Mutation p.R203C 0.09 deleterious(0.04) benign(0.057) TCGA-F1-A448-01 19 20308120 20308120 A - ZNF486 Frame_Shift_Del p.I203Lfs*28 0.10 TCGA-F1-A448-01 19 2877696 2877696 G A ZNF556 Missense_Mutation p.R247H 0.16 deleterious(0.02) probably_damaging(0.962) TCGA-F1-A448-01 19 3005804 3005804 C T TLE2 Missense_Mutation p.V555I 0.15 tolerated(1) benign(0.011) TCGA-F1-A448-01 19 35448881 35448881 G T ZNF792 Silent p.T626T 0.19 TCGA-F1-A448-01 19 35823533 35823533 G A CD22 Missense_Mutation p.V40I 0.11 tolerated(0.31) benign(0.211) TCGA-F1-A448-01 19 36229428 36229428 C T KMT2B Silent p.G2706G 0.12 TCGA-F1-A448-01 19 36303061 36303061 G A PRODH2 Missense_Mutation p.T238M 0.09 deleterious(0) probably_damaging(0.987) TCGA-F1-A448-01 19 38655214 38655214 C - SIPA1L3 Frame_Shift_Del p.L1294Wfs*199 0.08 TCGA-F1-A448-01 19 38818031 38818031 C T KCNK6 Silent p.S310S 0.11 TCGA-F1-A448-01 19 39052022 39052022 C T RYR1 Silent p.G4184G 0.09 TCGA-F1-A448-01 19 39597685 39597685 C T PAPL Silent p.N404N 0.08 TCGA-F1-A448-01 19 39962069 39962069 G A SUPT5H Missense_Mutation p.A584T 0.14 tolerated(0.27) benign(0.348) TCGA-F1-A448-01 19 40196514 40196514 C T LGALS14 5'UTR 0.23 TCGA-F1-A448-01 19 40883977 40883977 G A PLD3 Missense_Mutation p.R457Q 0.06 tolerated(1) benign(0.025) TCGA-F1-A448-01 19 43411907 43411907 G A PSG6 Missense_Mutation p.T269I 0.08 tolerated(0.09) possibly_damaging(0.744) TCGA-F1-A448-01 19 44096010 44096010 A G IRGQ 3'UTR 0.18 TCGA-F1-A448-01 19 44792273 44792273 G A ZNF235 Missense_Mutation p.R439C 0.15 deleterious(0.02) benign(0.344) TCGA-F1-A448-01 19 46443203 46443203 G A NOVA2 Missense_Mutation p.T466M 0.09 tolerated(0.09) probably_damaging(0.995) TCGA-F1-A448-01 19 46443210 46443210 C T NOVA2 Missense_Mutation p.A464T 0.08 tolerated(0.53) benign(0.258) TCGA-F1-A448-01 19 47844864 47844864 C A C5AR2 Missense_Mutation p.L270M 0.06 tolerated(0.17) probably_damaging(1) TCGA-F1-A448-01 19 48260402 48260402 G A GLTSCR2 3'Flank 0.16 TCGA-F1-A448-01 19 48342889 48342889 G A CRX Missense_Mutation p.A189T 0.16 tolerated(0.44) benign(0.028) TCGA-F1-A448-01 19 49224207 49224207 G - RASIP1 Frame_Shift_Del p.L914Wfs*12 0.21 TCGA-F1-A448-01 19 49685968 49685968 C A TRPM4 Missense_Mutation p.A466E 0.10 deleterious(0.04) benign(0.162) TCGA-F1-A448-01 19 49845794 49845794 C T TEAD2 Silent p.S381S 0.12 TCGA-F1-A448-01 19 49846583 49846583 C T TEAD2 Missense_Mutation p.G332R 0.10 deleterious(0.02) benign(0.354) TCGA-F1-A448-01 19 51301784 51301784 C T C19orf48 5'UTR 0.18 TCGA-F1-A448-01 19 52131128 52131128 G A SIGLEC5 Missense_Mutation p.P319L 0.18 tolerated(0.33) benign(0.231) TCGA-F1-A448-01 19 52537083 52537083 G A ZNF432 Nonsense_Mutation p.R617* 0.10 TCGA-F1-A448-01 19 53344480 53344480 G A ZNF468 Missense_Mutation p.T356I 0.09 deleterious(0.02) benign(0.023) TCGA-F1-A448-01 19 54660730 54660730 A G LENG1 Missense_Mutation p.Y116H 0.11 deleterious(0.01) probably_damaging(0.957) TCGA-F1-A448-01 19 54969327 54969327 C A LENG8 Missense_Mutation p.L650M 0.10 deleterious(0) probably_damaging(1) TCGA-F1-A448-01 19 55263160 55263160 C A KIR2DL3 Missense_Mutation p.L259I 0.17 tolerated(1) benign(0.001) TCGA-F1-A448-01 19 55329853 55329853 C T KIR3DL1 Missense_Mutation p.R52C 0.07 tolerated(0.1) benign(0.063) TCGA-F1-A448-01 19 55648520 55648520 C T TNNT1 Missense_Mutation p.E188K 0.10 deleterious(0) possibly_damaging(0.625) TCGA-F1-A448-01 19 5785223 5785223 C T DUS3L Silent p.A648A 0.24 TCGA-F1-A448-01 19 5832172 5832172 A G FUT6 Missense_Mutation p.M136T 0.09 deleterious(0) possibly_damaging(0.799) TCGA-F1-A448-01 19 58601684 58601684 G A ZSCAN18 Missense_Mutation p.P40L 0.15 deleterious_low_confidence(0.01) benign(0.09) TCGA-F1-A448-01 19 8550546 8550546 G - HNRNPM Frame_Shift_Del p.G413Vfs*115 0.10 TCGA-F1-A448-01 19 8656934 8656934 G A ADAMTS10 Silent p.D547D 0.09 TCGA-F1-A448-01 19 9213528 9213528 C A OR7G2 Missense_Mutation p.R152I 0.14 deleterious(0) benign(0.16) TCGA-F1-A448-01 1 110754142 110754144 CTC - KCNC4 In_Frame_Del p.S9del 0.30 TCGA-F1-A448-01 1 11097870 11097870 T C MASP2 Splice_Site p.X297_splice 0.07 TCGA-F1-A448-01 1 113266684 113266684 G - FAM19A3 Frame_Shift_Del p.R130Gfs*3 0.17 TCGA-F1-A448-01 1 12066617 12066617 C T MFN2 Missense_Mutation p.T580M 0.07 deleterious(0.01) possibly_damaging(0.908) TCGA-F1-A448-01 1 12907544 12907544 T - HNRNPCL1 Frame_Shift_Del p.N200Tfs*14 0.09 TCGA-F1-A448-01 1 146756150 146756150 G A CHD1L Missense_Mutation p.R611Q 0.08 deleterious(0.01) possibly_damaging(0.69) TCGA-F1-A448-01 1 149931626 149931626 A G OTUD7B Silent p.G274G 0.11 TCGA-F1-A448-01 1 151638414 151638414 C T SNX27 Silent p.I304I 0.10 TCGA-F1-A448-01 1 152944416 152944416 G A SPRR4 Missense_Mutation p.R17K 0.06 tolerated_low_confidence(1) unknown(0) TCGA-F1-A448-01 1 153536279 153536279 G A S100A2 Silent p.G24G 0.08 TCGA-F1-A448-01 1 154988858 154988858 C T ZBTB7B Silent p.F473F 0.09 TCGA-F1-A448-01 1 155491309 155491309 A G ASH1L Translation_Start_Site p.M1? 0.21 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-F1-A448-01 1 156290648 156290648 T - CCT3 Frame_Shift_Del p.K197Nfs*23 0.10 TCGA-F1-A448-01 1 156642793 156642793 G A NES Missense_Mutation p.A396V 0.05 tolerated(0.06) benign(0.338) TCGA-F1-A448-01 1 158390265 158390265 C T OR10K2 Missense_Mutation p.R131H 0.07 tolerated(0.38) benign(0.004) TCGA-F1-A448-01 1 159166166 159166166 C T CADM3 Missense_Mutation p.A269V 0.26 tolerated(1) benign(0.013) TCGA-F1-A448-01 1 161145762 161145762 C - B4GALT3 Frame_Shift_Del p.G30Afs*55 0.11 TCGA-F1-A448-01 1 161488699 161488699 C A FCGR2A 3'UTR 0.21 TCGA-F1-A448-01 1 16464570 16464570 C T EPHA2 Missense_Mutation p.V364I 0.10 tolerated(0.5) benign(0.013) TCGA-F1-A448-01 1 167096392 167096392 C T DUSP27 Missense_Mutation p.T675M 0.17 tolerated(0.09) possibly_damaging(0.724) TCGA-F1-A448-01 1 171810899 171810899 G A DNM3 Missense_Mutation p.A35T 0.20 deleterious(0.04) possibly_damaging(0.625) TCGA-F1-A448-01 1 173155859 173155859 G A TNFSF4 Silent p.S116S 0.11 TCGA-F1-A448-01 1 175306748 175306748 C A TNR Silent p.G1150G 0.09 TCGA-F1-A448-01 1 18149788 18149788 C - ACTL8 Frame_Shift_Del p.P97Lfs*2 0.10 TCGA-F1-A448-01 1 18149808 18149808 A T ACTL8 Missense_Mutation p.E102V 0.10 deleterious(0) probably_damaging(0.992) TCGA-F1-A448-01 1 186326529 186326529 T G TPR Missense_Mutation p.K575T 0.10 benign(0.403) TCGA-F1-A448-01 1 19180859 19180859 C T TAS1R2 Missense_Mutation p.A369T 0.15 tolerated(0.8) benign(0.021) TCGA-F1-A448-01 1 19209681 19209681 C T ALDH4A1 Silent p.A205A 0.10 TCGA-F1-A448-01 1 19426949 19426949 G A UBR4 Missense_Mutation p.P4381L 0.06 probably_damaging(0.995) TCGA-F1-A448-01 1 19441953 19441953 G A UBR4 Missense_Mutation p.P3668S 0.08 probably_damaging(0.968) TCGA-F1-A448-01 1 19480406 19480408 AGG - UBR4 In_Frame_Del p.P2162del 0.08 TCGA-F1-A448-01 1 196642190 196642190 G T CFH Missense_Mutation p.Q47H 0.11 deleterious(0.01) possibly_damaging(0.747) TCGA-F1-A448-01 1 200017345 200017345 C T NR5A2 Missense_Mutation p.P170L 0.06 deleterious(0.01) probably_damaging(0.994) TCGA-F1-A448-01 1 201289462 201289462 A G PKP1 Missense_Mutation p.M455V 0.13 tolerated(0.26) benign(0.001) TCGA-F1-A448-01 1 201330331 201330331 A G TNNT2 Intron 0.11 TCGA-F1-A448-01 1 201334426 201334426 G A TNNT2 Missense_Mutation p.R92W 0.14 deleterious(0) probably_damaging(0.998) TCGA-F1-A448-01 1 201821312 201821312 A G IPO9 Missense_Mutation p.M199V 0.13 tolerated(0.32) benign(0.088) TCGA-F1-A448-01 1 202702680 202702680 C T KDM5B Missense_Mutation p.R1253Q 0.08 tolerated(1) benign(0.149) TCGA-F1-A448-01 1 203098016 203098016 A G ADORA1 Missense_Mutation p.E16G 0.05 deleterious(0) probably_damaging(0.999) TCGA-F1-A448-01 1 203468789 203468789 G T OPTC Missense_Mutation p.R181M 0.12 deleterious(0) probably_damaging(0.987) TCGA-F1-A448-01 1 205069381 205069381 C T RBBP5 Silent p.T217T 0.08 TCGA-F1-A448-01 1 205238926 205238926 C T TMCC2 Silent p.H532H 0.08 TCGA-F1-A448-01 1 207131973 207131973 T C FCAMR Missense_Mutation p.E541G 0.06 deleterious(0.02) benign(0.04) TCGA-F1-A448-01 1 211192542 211192542 A G KCNH1 Silent p.T205T 0.07 TCGA-F1-A448-01 1 21299497 21299497 T - EIF4G3 Frame_Shift_Del p.T148Lfs*2 0.20 TCGA-F1-A448-01 1 215820962 215820962 C - USH2A Frame_Shift_Del p.G4898Vfs*10 0.18 TCGA-F1-A448-01 1 227169738 227169738 C T ADCK3 Silent p.A247A 0.11 TCGA-F1-A448-01 1 22817980 22817981 - A ZBTB40 Frame_Shift_Ins p.L265Tfs*8 0.12 TCGA-F1-A448-01 1 235969041 235969041 A G LYST Splice_Site p.X1131_splice 0.23 TCGA-F1-A448-01 1 236406753 236406753 A G ERO1LB Silent p.D158D 0.15 TCGA-F1-A448-01 1 247464167 247464167 C T ZNF496 Missense_Mutation p.R473H 0.08 tolerated(0.06) possibly_damaging(0.693) TCGA-F1-A448-01 1 247875693 247875693 C T OR6F1 Missense_Mutation p.R122H 0.18 deleterious(0.03) probably_damaging(0.915) TCGA-F1-A448-01 1 25633166 25633166 A G RHD Missense_Mutation p.E340G 0.06 tolerated(0.97) benign(0.004) TCGA-F1-A448-01 1 27106078 27106078 C - ARID1A Frame_Shift_Del p.P1898Hfs*25 0.10 TCGA-F1-A448-01 1 39914433 39914433 G T MACF1 Missense_Mutation p.E4693D 0.14 probably_damaging(0.999) TCGA-F1-A448-01 1 39926343 39926343 A - MACF1 Frame_Shift_Del p.K5076Sfs*6 0.14 TCGA-F1-A448-01 1 42865221 42865221 A C RIMKLA Missense_Mutation p.S104R 0.14 deleterious(0) possibly_damaging(0.616) TCGA-F1-A448-01 1 43917616 43917616 C T HYI Silent p.T165T 0.13 TCGA-F1-A448-01 1 45473239 45473239 C T HECTD3 Missense_Mutation p.R450H 0.12 deleterious(0.01) benign(0.264) TCGA-F1-A448-01 1 46485319 46485319 A - MAST2 Frame_Shift_Del p.K415Sfs*2 0.12 TCGA-F1-A448-01 1 46685444 46685444 G A LURAP1 Missense_Mutation p.R91H 0.13 deleterious(0) probably_damaging(0.999) TCGA-F1-A448-01 1 53250615 53250615 G A ZYG11B Missense_Mutation p.V387I 0.08 tolerated(0.09) benign(0.215) TCGA-F1-A448-01 1 59160846 59160846 T - MYSM1 Frame_Shift_Del p.D35Ifs*63 0.10 TCGA-F1-A448-01 1 59248633 59248634 CT - JUN Frame_Shift_Del p.S37Hfs*69 0.08 TCGA-F1-A448-01 1 6214827 6214827 A G CHD5 Missense_Mutation p.V213A 0.14 tolerated(0.95) benign(0.003) TCGA-F1-A448-01 1 6641353 6641353 T C ZBTB48 Silent p.S228S 0.17 TCGA-F1-A448-01 1 67266795 67266795 A G INSL5 Missense_Mutation p.V37A 0.11 tolerated(0.08) benign(0.09) TCGA-F1-A448-01 1 68948399 68948400 TC - DEPDC1 Frame_Shift_Del p.R364Tfs*14 0.13 TCGA-F1-A448-01 1 78338797 78338797 T - FAM73A Frame_Shift_Del p.F559Lfs*26 0.08 TCGA-F1-A448-01 1 8482823 8482825 GAA - RERE In_Frame_Del p.F416del 0.10 TCGA-F1-A448-01 1 85488152 85488152 A T MCOLN3 Intron 0.33 TCGA-F1-A448-01 1 94354581 94354581 C A GCLM Missense_Mutation p.G264C 0.09 deleterious(0) probably_damaging(0.999) TCGA-F1-A448-01 1 979719 979719 C T AGRN Silent p.C718C 0.09 TCGA-F1-A448-01 20 19956091 19956092 - C RIN2 Frame_Shift_Ins p.I526Hfs*108 0.11 TCGA-F1-A448-01 20 23028939 23028939 C T THBD Silent p.P401P 0.07 TCGA-F1-A448-01 20 31876653 31876653 C T BPIFB1 Silent p.G74G 0.27 TCGA-F1-A448-01 20 3526487 3526487 T - ATRN Frame_Shift_Del p.F231Lfs*8 0.12 TCGA-F1-A448-01 20 36149634 36149634 G T NNAT 5'UTR 0.10 TCGA-F1-A448-01 20 36488339 36488339 C T CTNNBL1 Silent p.T477T 0.10 TCGA-F1-A448-01 20 36760860 36760860 T A TGM2 Missense_Mutation p.D553V 0.08 tolerated(0.1) benign(0.166) TCGA-F1-A448-01 20 37357018 37357018 G A SLC32A1 Silent p.A438A 0.15 TCGA-F1-A448-01 20 40735533 40735533 T C PTPRT Missense_Mutation p.I1095V 0.06 deleterious(0.01) probably_damaging(0.964) TCGA-F1-A448-01 20 42815412 42815412 C T JPH2 5'UTR 0.14 TCGA-F1-A448-01 20 44238793 44238793 T C WFDC9 Missense_Mutation p.M10V 0.21 tolerated(0.76) benign(0.001) TCGA-F1-A448-01 20 4864322 4864322 C - SLC23A2 Frame_Shift_Del p.E264Rfs*12 0.10 TCGA-F1-A448-01 20 6057881 6057881 T C FERMT1 Missense_Mutation p.K658R 0.22 tolerated(0.25) probably_damaging(0.999) TCGA-F1-A448-01 20 62070004 62070004 G A KCNQ2 Missense_Mutation p.R333W 0.09 deleterious(0) probably_damaging(0.991) TCGA-F1-A448-01 20 62073780 62073780 C T KCNQ2 Silent p.A265A 0.14 TCGA-F1-A448-01 20 62187821 62187821 G A C20orf195 Missense_Mutation p.D269N 0.08 tolerated(0.05) possibly_damaging(0.467) TCGA-F1-A448-01 21 11029714 11029714 C T BAGE2 RNA 0.06 TCGA-F1-A448-01 21 27372467 27372467 G A APP Missense_Mutation p.P299L 0.10 deleterious(0) probably_damaging(0.952) TCGA-F1-A448-01 21 32493117 32493117 G A TIAM1 Missense_Mutation p.R1449W 0.09 deleterious(0) possibly_damaging(0.676) TCGA-F1-A448-01 21 34892698 34892698 A G GART Missense_Mutation p.C559R 0.10 deleterious(0) probably_damaging(1) TCGA-F1-A448-01 21 40568453 40568453 G A BRWD1 Missense_Mutation p.T2181M 0.12 tolerated_low_confidence(0.05) benign(0.003) TCGA-F1-A448-01 21 41414356 41414356 G - DSCAM Frame_Shift_Del p.K1877Nfs*8 0.16 TCGA-F1-A448-01 21 46320324 46320324 C T ITGB2 Missense_Mutation p.A270T 0.21 deleterious(0) probably_damaging(0.975) TCGA-F1-A448-01 21 46705651 46705651 A - POFUT2 Frame_Shift_Del p.F108Lfs*81 0.08 TCGA-F1-A448-01 22 19966463 19966463 C T ARVCF Missense_Mutation p.A513T 0.09 tolerated(0.3) benign(0.067) TCGA-F1-A448-01 22 21989426 21989426 T C CCDC116 Silent p.N358N 0.10 TCGA-F1-A448-01 22 21998265 21998265 G A SDF2L1 Missense_Mutation p.R156H 0.11 deleterious(0) probably_damaging(1) TCGA-F1-A448-01 22 24106850 24106850 G A C22orf15 Missense_Mutation p.R92H 0.19 tolerated(0.55) benign(0.085) TCGA-F1-A448-01 22 24580150 24580150 C T SUSD2 Silent p.N162N 0.07 TCGA-F1-A448-01 22 25019812 25019812 G A GGT1 Missense_Mutation p.V317I 0.10 tolerated(0.43) benign(0.08) TCGA-F1-A448-01 22 31533772 31533772 C T PLA2G3 Silent p.Q330Q 0.07 TCGA-F1-A448-01 22 38355392 38355392 C T POLR2F Nonsense_Mutation p.R44* 0.09 TCGA-F1-A448-01 22 43195135 43195135 G A ARFGAP3 Silent p.N481N 0.11 TCGA-F1-A448-01 22 43976413 43976413 C T EFCAB6 Silent p.T1053T 0.07 TCGA-F1-A448-01 22 45571865 45571865 G T NUP50 Missense_Mutation p.G82W 0.09 tolerated(0.19) possibly_damaging(0.682) TCGA-F1-A448-01 2 10059231 10059231 A T TAF1B Nonsense_Mutation p.K445* 0.10 TCGA-F1-A448-01 2 101622447 101622447 G A RPL31 Missense_Mutation p.R87Q 0.09 tolerated(0.32) benign(0.03) TCGA-F1-A448-01 2 106497888 106497888 G A NCK2 Missense_Mutation p.D111N 0.10 tolerated(0.18) probably_damaging(0.995) TCGA-F1-A448-01 2 111414651 111414651 C T BUB1 Missense_Mutation p.G554R 0.06 tolerated(0.05) possibly_damaging(0.903) TCGA-F1-A448-01 2 11375864 11375864 T - ROCK2 Frame_Shift_Del p.K229Nfs*2 0.10 TCGA-F1-A448-01 2 120020675 120020675 A G STEAP3 Missense_Mutation p.T420A 0.10 tolerated(0.1) benign(0.442) TCGA-F1-A448-01 2 128334199 128334201 CTA - MYO7B In_Frame_Del p.Y256del 0.17 TCGA-F1-A448-01 2 137814173 137814173 T C THSD7B Missense_Mutation p.V108A 0.14 tolerated(0.09) possibly_damaging(0.728) TCGA-F1-A448-01 2 145154054 145154054 T C ZEB2 Missense_Mutation p.M998V 0.05 tolerated(0.07) benign(0.178) TCGA-F1-A448-01 2 152663420 152663420 C T ARL5A Missense_Mutation p.A136T 0.10 tolerated(0.15) benign(0.008) TCGA-F1-A448-01 2 153526809 153526809 A G PRPF40A Silent p.T522T 0.20 TCGA-F1-A448-01 2 15374857 15374857 T - NBAS Frame_Shift_Del p.K1986Nfs*25 0.09 TCGA-F1-A448-01 2 160637475 160637477 TTC - LY75-CD302 In_Frame_Del p.E1712del 0.24 TCGA-F1-A448-01 2 160994276 160994276 G T ITGB6 Silent p.A443A 0.12 TCGA-F1-A448-01 2 163174504 163174504 G A IFIH1 Missense_Mutation p.P105L 0.06 deleterious(0) probably_damaging(1) TCGA-F1-A448-01 2 166179909 166179909 C T SCN2A Missense_Mutation p.P639S 0.10 tolerated(0.17) possibly_damaging(0.54) TCGA-F1-A448-01 2 179428619 179428619 G A TTN Nonsense_Mutation p.R27414* 0.11 TCGA-F1-A448-01 2 179480516 179480516 C A TTN Splice_Site p.X16105_splice 0.13 TCGA-F1-A448-01 2 179611454 179611454 G A TTN Intron 0.08 TCGA-F1-A448-01 2 190922325 190922325 T - MSTN Frame_Shift_Del p.R263Dfs*24 0.10 TCGA-F1-A448-01 2 202149799 202149799 T - CASP8 Frame_Shift_Del p.F415Lfs*26 0.08 TCGA-F1-A448-01 2 209209876 209209876 C T PIKFYVE Missense_Mutation p.A1690V 0.12 tolerated(0.54) benign(0.001) TCGA-F1-A448-01 2 209271775 209271775 G A PTH2R Missense_Mutation p.G3R 0.10 tolerated_low_confidence(0.45) benign(0.001) TCGA-F1-A448-01 2 215851418 215851418 A G ABCA12 Silent p.P1337P 0.11 TCGA-F1-A448-01 2 219319721 219319721 G A USP37 Silent p.L958L 0.07 TCGA-F1-A448-01 2 220480877 220480877 C T STK11IP Missense_Mutation p.R1088W 0.14 deleterious(0) probably_damaging(0.996) TCGA-F1-A448-01 2 233198664 233198664 G A DIS3L2 Missense_Mutation p.V709I 0.11 tolerated(0.95) benign(0.025) TCGA-F1-A448-01 2 233244696 233272775 2:233244696-233272775 - ALPP large deletion 0.10 TCGA-F1-A448-01 2 233346319 233346319 C A ECEL1 Missense_Mutation p.G629V 0.12 deleterious(0) probably_damaging(1) TCGA-F1-A448-01 2 237489306 237489306 C A ACKR3 Silent p.V66V 0.11 TCGA-F1-A448-01 2 242401954 242401954 A G FARP2 Missense_Mutation p.E535G 0.06 deleterious(0.02) benign(0.199) TCGA-F1-A448-01 2 242618032 242618032 G A DTYMK Silent p.D121D 0.07 TCGA-F1-A448-01 2 25057796 25057796 G A ADCY3 Missense_Mutation p.P558S 0.26 tolerated(0.15) benign(0.231) TCGA-F1-A448-01 2 27683910 27683910 G A IFT172 Silent p.C831C 0.12 TCGA-F1-A448-01 2 30143119 30143119 C T ALK Missense_Mutation p.R136Q 0.31 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-F1-A448-01 2 31457553 31457553 T C EHD3 Silent p.S22S 0.07 TCGA-F1-A448-01 2 33740122 33740122 A C RASGRP3 5'UTR 0.24 TCGA-F1-A448-01 2 3392267 3392267 C T TRAPPC12 Silent p.D291D 0.16 TCGA-F1-A448-01 2 38224583 38224583 A - RMDN2 Frame_Shift_Del p.M504Wfs*39 0.10 TCGA-F1-A448-01 2 40655876 40655876 A G SLC8A1 Silent p.V515V 0.13 TCGA-F1-A448-01 2 46237529 46237529 A C PRKCE Missense_Mutation p.K437T 0.09 deleterious(0) probably_damaging(1) TCGA-F1-A448-01 2 48028150 48028150 A G MSH6 Missense_Mutation p.T1010A 0.16 tolerated(0.06) benign(0.307) TCGA-F1-A448-01 2 50850582 50850582 A G NRXN1 Missense_Mutation p.L368P 0.08 deleterious(0) probably_damaging(1) TCGA-F1-A448-01 2 56420254 56420254 A T CCDC85A Nonsense_Mutation p.K307* 0.20 TCGA-F1-A448-01 2 61450271 61450271 C T USP34 Missense_Mutation p.R2558H 0.10 deleterious(0) probably_damaging(0.964) TCGA-F1-A448-01 2 61575116 61575116 C T USP34 Missense_Mutation p.R725Q 0.12 tolerated_low_confidence(0.09) benign(0.014) TCGA-F1-A448-01 2 61633020 61633020 T - USP34 Frame_Shift_Del p.K125Nfs*10 0.09 TCGA-F1-A448-01 2 68352450 68352450 G A WDR92 3'Flank 0.06 TCGA-F1-A448-01 2 68882355 68882355 C T PROKR1 Missense_Mutation p.R277C 0.07 deleterious(0.04) probably_damaging(0.954) TCGA-F1-A448-01 2 69351762 69351762 C T ANTXR1 Missense_Mutation p.T313I 0.07 tolerated(0.06) probably_damaging(0.949) TCGA-F1-A448-01 2 70504482 70504482 T C PCYOX1 Silent p.I492I 0.14 TCGA-F1-A448-01 2 71740970 71740970 G A DYSF Silent p.P226P 0.11 TCGA-F1-A448-01 2 74086401 74086401 G A STAMBP Silent p.A342A 0.12 TCGA-F1-A448-01 2 74328942 74328942 C T TET3 Missense_Mutation p.T1541M 0.10 deleterious(0) probably_damaging(1) TCGA-F1-A448-01 2 74750267 74750267 G A DQX1 Nonsense_Mutation p.R375* 0.08 TCGA-F1-A448-01 2 85573156 85573156 G A RETSAT Silent p.N353N 0.05 TCGA-F1-A448-01 2 86693820 86693820 T C KDM3A Missense_Mutation p.S445P 0.12 deleterious_low_confidence(0.04) benign(0.008) TCGA-F1-A448-01 2 86697397 86697397 C T KDM3A Silent p.F530F 0.12 TCGA-F1-A448-01 2 8946399 8946399 A G KIDINS220 Splice_Site p.X201_splice 0.17 TCGA-F1-A448-01 2 95756174 95756174 A C MRPS5 Missense_Mutation p.M342R 0.08 deleterious(0.01) possibly_damaging(0.646) TCGA-F1-A448-01 3 10191488 10191488 C T VHL Nonsense_Mutation p.R161* 0.12 TCGA-F1-A448-01 3 10191562 10191562 C T VHL Silent p.Y185Y 0.09 TCGA-F1-A448-01 3 102196550 102196550 G A ZPLD1 3'UTR 0.16 TCGA-F1-A448-01 3 108682287 108682287 C T MORC1 Missense_Mutation p.A925T 0.04 tolerated(0.16) benign(0.063) TCGA-F1-A448-01 3 111795755 111795755 T C TMPRSS7 Missense_Mutation p.L537P 0.07 deleterious(0) probably_damaging(0.983) TCGA-F1-A448-01 3 111849407 111849407 C T GCSAM Intron 0.13 TCGA-F1-A448-01 3 113440552 113440552 G A NAA50 3'UTR 0.08 TCGA-F1-A448-01 3 119165905 119165905 G A TMEM39A Nonsense_Mutation p.R179* 0.05 TCGA-F1-A448-01 3 123452994 123452994 C T MYLK Silent p.S283S 0.16 TCGA-F1-A448-01 3 123633848 123633848 A G CCDC14 Silent p.C839C 0.09 TCGA-F1-A448-01 3 124376608 124376608 T C KALRN Silent p.C89C 0.16 TCGA-F1-A448-01 3 128199848 128199848 C T GATA2 3'UTR 0.16 TCGA-F1-A448-01 3 128631568 128631568 G A ACAD9 3'UTR 0.12 TCGA-F1-A448-01 3 130289969 130289969 G A COL6A6 Silent p.R903R 0.10 TCGA-F1-A448-01 3 130293357 130293357 G A COL6A6 Missense_Mutation p.A1179T 0.12 tolerated(0.57) benign(0.039) TCGA-F1-A448-01 3 133666179 133666179 T C SLCO2A1 Missense_Mutation p.T406A 0.07 deleterious(0.02) benign(0.297) TCGA-F1-A448-01 3 13367374 13367374 G A NUP210 Missense_Mutation p.T1522M 0.05 deleterious(0.02) benign(0.026) TCGA-F1-A448-01 3 137881108 137881108 C T DBR1 Missense_Mutation p.A420T 0.13 tolerated(0.29) benign(0.003) TCGA-F1-A448-01 3 141011689 141011689 G A ACPL2 Missense_Mutation p.R362H 0.06 tolerated(0.18) benign(0.009) TCGA-F1-A448-01 3 14862458 14862458 A C FGD5 Missense_Mutation p.K627T 0.10 deleterious(0) possibly_damaging(0.776) TCGA-F1-A448-01 3 14862863 14862863 G T FGD5 Missense_Mutation p.R762L 0.06 deleterious(0.01) probably_damaging(0.998) TCGA-F1-A448-01 3 150877785 150877786 - C MED12L Frame_Shift_Ins p.G338Rfs*28 0.19 TCGA-F1-A448-01 3 151162822 151162822 C A IGSF10 Missense_Mutation p.R1649S 0.10 deleterious(0) probably_damaging(0.928) TCGA-F1-A448-01 3 152018157 152018157 G C MBNL1 Splice_Site p.X58_splice 0.10 TCGA-F1-A448-01 3 155203456 155203456 G T PLCH1 Missense_Mutation p.P896H 0.12 deleterious(0) probably_damaging(0.982) TCGA-F1-A448-01 3 16260987 16260987 T C GALNT15 Silent p.A490A 0.06 TCGA-F1-A448-01 3 164764796 164764796 C T SI Missense_Mutation p.V574I 0.09 tolerated(0.53) benign(0.005) TCGA-F1-A448-01 3 171330147 171330147 T G PLD1 Missense_Mutation p.E935A 0.13 deleterious(0.05) benign(0.142) TCGA-F1-A448-01 3 174814908 174814908 C T NAALADL2 Silent p.H124H 0.08 TCGA-F1-A448-01 3 176769374 176769374 T G TBL1XR1 Silent p.A115A 0.06 TCGA-F1-A448-01 3 180328346 180328346 G A TTC14 3'UTR 0.06 TCGA-F1-A448-01 3 181430501 181430501 C T SOX2 Missense_Mutation p.T118M 0.20 deleterious(0) possibly_damaging(0.906) TCGA-F1-A448-01 3 183884759 183884760 AG - DVL3 Frame_Shift_Del p.E399Afs*12 0.09 TCGA-F1-A448-01 3 184041274 184041274 G A EIF4G1 Missense_Mutation p.E730K 0.14 deleterious(0.01) possibly_damaging(0.498) TCGA-F1-A448-01 3 185329480 185329480 G - SENP2 Frame_Shift_Del p.E257Kfs*29 0.15 TCGA-F1-A448-01 3 192516280 192516280 T - MB21D2 Frame_Shift_Del p.K457Nfs*5 0.09 TCGA-F1-A448-01 3 27216147 27216147 C T NEK10 Missense_Mutation p.E895K 0.06 tolerated(0.08) benign(0.35) TCGA-F1-A448-01 3 30769843 30769843 T C GADL1 Missense_Mutation p.H486R 0.07 tolerated(0.35) benign(0.003) TCGA-F1-A448-01 3 32995136 32995136 T C CCR4 Silent p.T74T 0.10 TCGA-F1-A448-01 3 42251455 42251455 A C TRAK1 Silent p.P647P 0.06 TCGA-F1-A448-01 3 42750438 42750438 G A CCDC13 3'UTR 0.04 TCGA-F1-A448-01 3 47453904 47453906 AGG - PTPN23 In_Frame_Del p.E1438del 0.10 TCGA-F1-A448-01 3 47455441 47455441 C T SCAP Missense_Mutation p.R1248H 0.06 deleterious(0) probably_damaging(0.999) TCGA-F1-A448-01 3 48697911 48697911 C T CELSR3 Silent p.V719V 0.08 TCGA-F1-A448-01 3 49412973 49412973 C T RHOA Missense_Mutation p.G17E 0.11 deleterious(0) probably_damaging(0.992) TCGA-F1-A448-01 3 49699948 49699948 A C BSN Missense_Mutation p.E3557A 0.07 unknown(0) TCGA-F1-A448-01 3 50334110 50334110 G - NAT6 Frame_Shift_Del p.P284Lfs*13 0.08 TCGA-F1-A448-01 3 52027925 52027925 C T RPL29 Missense_Mutation p.R107H 0.28 tolerated(0.41) benign(0.004) TCGA-F1-A448-01 3 52824844 52824844 C T ITIH1 Nonsense_Mutation p.R801* 0.08 TCGA-F1-A448-01 3 54925416 54925416 G A CACNA2D3 Missense_Mutation p.G729S 0.10 deleterious(0) possibly_damaging(0.719) TCGA-F1-A448-01 3 72881554 72881554 C T SHQ1 Missense_Mutation p.A189T 0.15 tolerated(0.09) benign(0.082) TCGA-F1-A448-01 3 86114782 86114782 G A CADM2 Missense_Mutation p.G366D 0.09 deleterious(0) possibly_damaging(0.885) TCGA-F1-A448-01 3 89391024 89391024 A - EPHA3 Frame_Shift_Del p.K365Nfs*6 0.10 TCGA-F1-A448-01 3 98001800 98001800 A G OR5H2 Silent p.T23T 0.13 TCGA-F1-A448-01 3 98251069 98251069 C T GPR15 Silent p.S64S 0.08 TCGA-F1-A448-01 3 9982596 9982596 C T CRELD1 Nonsense_Mutation p.R175* 0.15 TCGA-F1-A448-01 4 113356325 113356326 - A ALPK1 Frame_Shift_Ins p.S1022Ifs*2 0.09 TCGA-F1-A448-01 4 121616221 121616221 A G PRDM5 3'UTR 0.10 TCGA-F1-A448-01 4 123147974 123147974 G A KIAA1109 Missense_Mutation p.R969Q 0.12 probably_damaging(0.99) TCGA-F1-A448-01 4 123329116 123329116 G A ADAD1 Missense_Mutation p.D260N 0.10 tolerated(0.31) benign(0.063) TCGA-F1-A448-01 4 126239459 126239459 C T FAT4 Silent p.S631S 0.14 TCGA-F1-A448-01 4 134084242 134084242 C T PCDH10 Missense_Mutation p.R970C 0.08 deleterious(0.01) probably_damaging(0.997) TCGA-F1-A448-01 4 1348597 1348597 C T UVSSA Missense_Mutation p.R337W 0.17 deleterious(0.04) possibly_damaging(0.772) TCGA-F1-A448-01 4 15054040 15054040 C T CPEB2 Missense_Mutation p.R735C 0.09 deleterious_low_confidence(0.01) benign(0.106) TCGA-F1-A448-01 4 153249385 153249385 G A FBXW7 Missense_Mutation p.R465C 0.09 deleterious(0) probably_damaging(1) TCGA-F1-A448-01 4 153896555 153896555 G T FHDC1 Missense_Mutation p.M704I 0.09 tolerated(0.44) benign(0.008) TCGA-F1-A448-01 4 154237032 154237032 C T TRIM2 Missense_Mutation p.R555C 0.20 deleterious(0) probably_damaging(0.997) TCGA-F1-A448-01 4 156651353 156651353 T - GUCY1A3 Frame_Shift_Del p.L683* 0.10 TCGA-F1-A448-01 4 160253755 160253755 A - RAPGEF2 Frame_Shift_Del p.S522Vfs*12 0.14 TCGA-F1-A448-01 4 175898318 175898318 G AT ADAM29 Frame_Shift_Ins p.D548Ifs*10 0.16 TCGA-F1-A448-01 4 177116689 177116689 C A SPATA4 Missense_Mutation p.G9W 0.09 deleterious(0.01) benign(0.319) TCGA-F1-A448-01 4 184175073 184175073 C T WWC2 Missense_Mutation p.R373C 0.24 deleterious(0) benign(0.004) TCGA-F1-A448-01 4 3133117 3133117 A - HTT Frame_Shift_Del p.N699Mfs*9 0.11 TCGA-F1-A448-01 4 46388118 46388118 C T GABRA2 Missense_Mutation p.D54N 0.08 deleterious(0) probably_damaging(1) TCGA-F1-A448-01 4 48422433 48422433 G A SLAIN2 Missense_Mutation p.R551H 0.13 deleterious(0) probably_damaging(0.996) TCGA-F1-A448-01 4 57182333 57182333 G A KIAA1211 Missense_Mutation p.A889T 0.11 tolerated(1) possibly_damaging(0.695) TCGA-F1-A448-01 4 70920041 70920041 C T HTN1 Silent p.S18S 0.10 TCGA-F1-A448-01 4 73414336 73414336 G A ADAMTS3 Silent p.T121T 0.12 TCGA-F1-A448-01 4 8307925 8307925 C T HTRA3 3'UTR 0.29 TCGA-F1-A448-01 4 87968290 87968290 A G AFF1 Silent p.P201P 0.11 TCGA-F1-A448-01 4 906522 906522 C T GAK Splice_Site p.X89_splice 0.13 TCGA-F1-A448-01 4 95129604 95129604 C T SMARCAD1 Missense_Mutation p.A20V 0.11 tolerated_low_confidence(0.35) benign(0.165) TCGA-F1-A448-01 5 101816044 101816044 G A SLCO6A1 Silent p.Y151Y 0.08 TCGA-F1-A448-01 5 106763050 106763050 C A EFNA5 Missense_Mutation p.G96W 0.17 deleterious(0) probably_damaging(1) TCGA-F1-A448-01 5 113698412 113698412 G A KCNN2 5'UTR 0.20 TCGA-F1-A448-01 5 118465026 118465026 T - DMXL1 Frame_Shift_Del p.L410Yfs*17 0.10 TCGA-F1-A448-01 5 1268637 1268637 G A TERT Silent p.D860D 0.10 TCGA-F1-A448-01 5 131927650 131927650 A - RAD50 Frame_Shift_Del p.K574Nfs*24 0.10 TCGA-F1-A448-01 5 135388731 135388731 C T TGFBI Missense_Mutation p.A350V 0.11 tolerated(0.18) possibly_damaging(0.582) TCGA-F1-A448-01 5 140176376 140176376 C T PCDHA2 Silent p.Y609Y 0.09 TCGA-F1-A448-01 5 140237092 140237092 G A PCDHA10 Missense_Mutation p.A487T 0.09 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-F1-A448-01 5 140431352 140431352 C T PCDHB1 Silent p.A99A 0.12 TCGA-F1-A448-01 5 140515665 140515665 G A PCDHB5 Missense_Mutation p.G217S 0.07 deleterious_low_confidence(0.01) possibly_damaging(0.615) TCGA-F1-A448-01 5 140580109 140580109 T G PCDHB11 Missense_Mutation p.N254K 0.18 deleterious_low_confidence(0.02) probably_damaging(0.911) TCGA-F1-A448-01 5 140725805 140725805 G A PCDHGA3 Silent p.T735T 0.11 TCGA-F1-A448-01 5 141005843 141005843 C T HDAC3 Missense_Mutation p.V280I 0.12 deleterious(0.04) possibly_damaging(0.866) TCGA-F1-A448-01 5 14359556 14359556 G A TRIO Silent p.S769S 0.08 TCGA-F1-A448-01 5 145969658 145969658 A C PPP2R2B Missense_Mutation p.V398G 0.07 tolerated(0.54) benign(0.001) TCGA-F1-A448-01 5 147807089 147807089 G A FBXO38 Silent p.V744V 0.09 TCGA-F1-A448-01 5 149225326 149225326 C T PPARGC1B Silent p.G940G 0.11 TCGA-F1-A448-01 5 156479516 156479516 T C HAVCR1 Missense_Mutation p.T177A 0.06 tolerated(0.51) unknown(0) TCGA-F1-A448-01 5 157214842 157214842 C T CLINT1 Missense_Mutation p.A582T 0.08 tolerated(0.55) benign(0.001) TCGA-F1-A448-01 5 159680556 159680556 G A CCNJL Silent p.H379H 0.07 TCGA-F1-A448-01 5 169015404 169015404 A - SPDL1 5'UTR 0.29 TCGA-F1-A448-01 5 176070219 176070219 C T EIF4E1B Missense_Mutation p.T51M 0.09 tolerated(0.1) benign(0.012) TCGA-F1-A448-01 5 177577890 177577890 G A NHP2 Missense_Mutation p.T112M 0.11 tolerated(0.11) possibly_damaging(0.786) TCGA-F1-A448-01 5 178199541 178199541 G T AACSP1 RNA 0.14 TCGA-F1-A448-01 5 23527124 23527124 C T PRDM9 Missense_Mutation p.R643W 0.06 deleterious(0.02) probably_damaging(0.997) TCGA-F1-A448-01 5 32395284 32395284 G A ZFR Missense_Mutation p.R654C 0.09 deleterious(0.02) unknown(0) TCGA-F1-A448-01 5 37169215 37169215 G A C5orf42 Missense_Mutation p.A2304V 0.09 deleterious(0) probably_damaging(0.922) TCGA-F1-A448-01 5 49707190 49707190 T - EMB Frame_Shift_Del p.N75Ifs*4 0.08 TCGA-F1-A448-01 5 5239334 5239334 A C ADAMTS16 Missense_Mutation p.N742T 0.19 deleterious(0) probably_damaging(0.986) TCGA-F1-A448-01 5 56777362 56777362 T C ACTBL2 3'UTR 0.07 TCGA-F1-A448-01 5 79025504 79025504 G A CMYA5 Missense_Mutation p.A306T 0.09 benign(0) TCGA-F1-A448-01 5 96314863 96314863 A C LNPEP Missense_Mutation p.N14T 0.07 deleterious(0) probably_damaging(0.992) TCGA-F1-A448-01 6 100901670 100901670 C T SIM1 Missense_Mutation p.V76I 0.08 tolerated(0.24) benign(0.004) TCGA-F1-A448-01 6 111588374 111588374 G A KIAA1919 3'UTR 0.11 TCGA-F1-A448-01 6 111901440 111901440 C T TRAF3IP2 Missense_Mutation p.A328T 0.12 tolerated(0.23) benign(0.005) TCGA-F1-A448-01 6 112397206 112397206 T - TUBE1 Frame_Shift_Del p.K249Sfs*10 0.10 TCGA-F1-A448-01 6 112463468 112463468 G A LAMA4 Silent p.G840G 0.06 TCGA-F1-A448-01 6 116600626 116600626 T - TSPYL1 Frame_Shift_Del p.K123Rfs*10 0.11 TCGA-F1-A448-01 6 121768438 121768438 G - GJA1 Frame_Shift_Del p.L151Cfs*21 0.15 TCGA-F1-A448-01 6 126080338 126080338 G A HEY2 Missense_Mutation p.R135Q 0.08 deleterious(0) probably_damaging(0.913) TCGA-F1-A448-01 6 126080601 126080601 G A HEY2 Missense_Mutation p.G223S 0.08 tolerated(0.4) benign(0.015) TCGA-F1-A448-01 6 127837038 127837038 C - SOGA3 Frame_Shift_Del p.G241Afs*133 0.11 TCGA-F1-A448-01 6 136698932 136698932 C T MAP7 Missense_Mutation p.A260T 0.07 deleterious(0) probably_damaging(1) TCGA-F1-A448-01 6 143823103 143823103 G A FUCA2 Nonsense_Mutation p.R374* 0.07 TCGA-F1-A448-01 6 144757114 144757114 C T UTRN Missense_Mutation p.T300I 0.11 tolerated(0.06) probably_damaging(0.939) TCGA-F1-A448-01 6 147635458 147635458 T G STXBP5 Missense_Mutation p.I451S 0.14 deleterious(0) possibly_damaging(0.551) TCGA-F1-A448-01 6 151152245 151152245 T C PLEKHG1 Silent p.Y666Y 0.09 TCGA-F1-A448-01 6 151917593 151917593 G A CCDC170 Missense_Mutation p.A531T 0.10 deleterious(0.02) benign(0.043) TCGA-F1-A448-01 6 152443751 152443751 G A SYNE1 Silent p.R8738R 0.18 TCGA-F1-A448-01 6 152673328 152673328 C T SYNE1 Missense_Mutation p.R3805Q 0.17 probably_damaging(0.997) TCGA-F1-A448-01 6 158296187 158296187 G A SNX9 Silent p.S93S 0.13 TCGA-F1-A448-01 6 158516963 158516963 G A SYNJ2 Missense_Mutation p.S1353N 0.11 tolerated_low_confidence(0.66) benign(0.004) TCGA-F1-A448-01 6 160225038 160225038 C T PNLDC1 Missense_Mutation p.T86M 0.07 deleterious(0.02) probably_damaging(1) TCGA-F1-A448-01 6 17292146 17292146 C T RBM24 Silent p.A169A 0.11 TCGA-F1-A448-01 6 18222306 18222306 G A KDM1B 3'UTR 0.14 TCGA-F1-A448-01 6 26390936 26390936 G A BTN2A2 Splice_Site p.X318_splice 0.24 TCGA-F1-A448-01 6 28294178 28294178 C A ZSCAN31 Missense_Mutation p.G329V 0.09 deleterious(0) probably_damaging(1) TCGA-F1-A448-01 6 28334117 28334117 C - ZKSCAN3 3'UTR 0.13 TCGA-F1-A448-01 6 28497328 28497328 A T GPX5 Missense_Mutation p.H63L 0.07 tolerated(0.64) benign(0.025) TCGA-F1-A448-01 6 28540408 28540408 T - SCAND3 Frame_Shift_Del p.K1086Nfs*11 0.12 TCGA-F1-A448-01 6 30709013 30709013 G A FLOT1 Missense_Mutation p.T103M 0.09 deleterious(0) probably_damaging(0.924) TCGA-F1-A448-01 6 31604191 31604191 C T PRRC2A Missense_Mutation p.L1944F 0.06 unknown(0) TCGA-F1-A448-01 6 31656035 31656035 A G ABHD16A Missense_Mutation p.I433T 0.09 deleterious(0.04) probably_damaging(0.979) TCGA-F1-A448-01 6 31698703 31698703 G A CLIC1 Silent p.Y214Y 0.17 TCGA-F1-A448-01 6 31737509 31737509 G - VWA7 Frame_Shift_Del p.K421Rfs*12 0.08 TCGA-F1-A448-01 6 31783643 31783643 C T HSPA1A Missense_Mutation p.T37I 0.12 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-F1-A448-01 6 31936192 31936192 C T SKIV2L Silent p.L982L 0.09 TCGA-F1-A448-01 6 32782846 32782846 G A HLA-DOB Silent p.G112G 0.14 TCGA-F1-A448-01 6 33657074 33657074 G T ITPR3 Missense_Mutation p.A2252S 0.08 tolerated(0.11) benign(0.013) TCGA-F1-A448-01 6 33663406 33663406 G A SBP1 Silent p.P23P 0.09 TCGA-F1-A448-01 6 34826502 34826502 T C UHRF1BP1 Missense_Mutation p.V790A 0.08 tolerated(0.91) benign(0.001) TCGA-F1-A448-01 6 36106833 36106833 G A MAPK13 Splice_Site p.X340_splice 0.14 TCGA-F1-A448-01 6 42666224 42666224 G A PRPH2 Missense_Mutation p.R284C 0.16 deleterious(0) probably_damaging(0.997) TCGA-F1-A448-01 6 43022174 43022174 A G MRPL2 Silent p.H252H 0.14 TCGA-F1-A448-01 6 44922337 44922337 T - SUPT3H Frame_Shift_Del p.A208Lfs*15 0.12 TCGA-F1-A448-01 6 49578748 49578748 G A RHAG Silent p.G352G 0.09 TCGA-F1-A448-01 6 56481980 56481980 A C DST Intron 0.10 TCGA-F1-A448-01 6 69640508 69640508 A - BAI3 Frame_Shift_Del p.R274Gfs*57 0.14 TCGA-F1-A448-01 6 74124393 74124393 C T DDX43 Missense_Mutation p.R577C 0.06 deleterious(0.02) possibly_damaging(0.693) TCGA-F1-A448-01 6 75827179 75827179 C T COL12A1 Missense_Mutation p.V2480M 0.11 probably_damaging(1) TCGA-F1-A448-01 6 76022525 76022525 T C FILIP1 Missense_Mutation p.Q1008R 0.07 tolerated(0.14) benign(0.4) TCGA-F1-A448-01 6 80723018 80723018 C T TTK Nonsense_Mutation p.R307* 0.08 TCGA-F1-A448-01 6 84865121 84865121 A T KIAA1009 Missense_Mutation p.F964I 0.09 deleterious(0) probably_damaging(0.988) TCGA-F1-A448-01 6 85466569 85466569 C T TBX18 Silent p.S206S 0.07 TCGA-F1-A448-01 6 88125515 88125515 G A C6ORF165 Missense_Mutation p.R132Q 0.06 tolerated(0.23) benign(0.041) TCGA-F1-A448-01 6 90422427 90422427 C A MDN1 Nonsense_Mutation p.G2433* 0.11 TCGA-F1-A448-01 7 100179467 100179467 T C LRCH4 Silent p.E177E 0.15 TCGA-F1-A448-01 7 101559408 101559408 C T CUX1 Missense_Mutation p.A26V 0.09 tolerated(0.06) unknown(0) TCGA-F1-A448-01 7 111386404 111386404 G A DOCK4 Silent p.L1546L 0.17 TCGA-F1-A448-01 7 113518466 113518466 G A PPP1R3A Missense_Mutation p.S894L 0.08 tolerated(1) benign(0) TCGA-F1-A448-01 7 122338188 122338188 C T RNF133 Missense_Mutation p.R262H 0.07 tolerated(0.55) benign(0.011) TCGA-F1-A448-01 7 122763254 122763254 C T SLC13A1 Missense_Mutation p.E426K 0.12 tolerated(0.37) probably_damaging(0.993) TCGA-F1-A448-01 7 126698149 126698149 C T GRM8 Intron 0.20 TCGA-F1-A448-01 7 127721553 127721553 G A SND1 Missense_Mutation p.G704S 0.12 deleterious(0.01) probably_damaging(0.949) TCGA-F1-A448-01 7 129847761 129847761 T - SSMEM1 Frame_Shift_Del p.S6Pfs*6 0.09 TCGA-F1-A448-01 7 135263559 135263559 G A NUP205 Missense_Mutation p.R313H 0.12 deleterious(0.04) benign(0.36) TCGA-F1-A448-01 7 136699719 136699719 T C CHRM2 Missense_Mutation p.V36A 0.16 tolerated(0.13) possibly_damaging(0.777) TCGA-F1-A448-01 7 138603524 138603524 A - KIAA1549 Frame_Shift_Del p.L283* 0.09 TCGA-F1-A448-01 7 140454026 140454026 G C BRAF Missense_Mutation p.H568D 0.21 deleterious(0) probably_damaging(0.956) TCGA-F1-A448-01 7 141766492 141766492 C T MGAM Intron 0.07 TCGA-F1-A448-01 7 142494953 142494953 C T TRBJ2-6 Silent p.A11A 0.21 TCGA-F1-A448-01 7 143771747 143771747 G A OR2A25 Silent p.L145L 0.11 TCGA-F1-A448-01 7 147092865 147092865 A G CNTNAP2 Missense_Mutation p.I555V 0.06 tolerated(1) benign(0.017) TCGA-F1-A448-01 7 149462850 149462850 C T ZNF467 Silent p.A247A 0.23 TCGA-F1-A448-01 7 149557637 149557637 G A ZNF862 Missense_Mutation p.R463H 0.10 deleterious(0.02) probably_damaging(0.994) TCGA-F1-A448-01 7 154379718 154379718 A G DPP6 Intron 0.08 TCGA-F1-A448-01 7 155251746 155251746 G A EN2 Missense_Mutation p.R225Q 0.21 deleterious(0) probably_damaging(0.956) TCGA-F1-A448-01 7 155473489 155473489 G A RBM33 Missense_Mutation p.E152K 0.17 deleterious(0.01) possibly_damaging(0.734) TCGA-F1-A448-01 7 23157527 23157529 ATC - KLHL7 Intron 0.13 TCGA-F1-A448-01 7 25182374 25182374 G A C7orf31 Silent p.F248F 0.16 TCGA-F1-A448-01 7 2611882 2611882 G A IQCE Missense_Mutation p.V106I 0.26 tolerated(0.61) benign(0.048) TCGA-F1-A448-01 7 27195899 27195900 AT - HOXA7 Frame_Shift_Del p.I89Pfs*6 0.22 TCGA-F1-A448-01 7 37382358 37382358 G A ELMO1 5'UTR 0.13 TCGA-F1-A448-01 7 37780555 37780555 T - GPR141 Frame_Shift_Del p.F188Lfs*3 0.11 TCGA-F1-A448-01 7 39504052 39504052 A G POU6F2 Missense_Mutation p.T615A 0.15 deleterious(0.01) unknown(0) TCGA-F1-A448-01 7 50468286 50468286 G A IKZF1 Silent p.S465S 0.19 TCGA-F1-A448-01 7 54826922 54826922 G T SEC61G 5'UTR 0.13 TCGA-F1-A448-01 7 75614213 75614213 C T POR Silent p.Y395Y 0.14 TCGA-F1-A448-01 7 80374085 80374085 C G SEMA3C 3'UTR 0.17 TCGA-F1-A448-01 7 82586142 82586142 T C PCLO Missense_Mutation p.E1376G 0.18 unknown(0) TCGA-F1-A448-01 7 87160719 87160719 A C ABCB1 Missense_Mutation p.L859R 0.12 deleterious(0) probably_damaging(0.996) TCGA-F1-A448-01 7 91502949 91502949 T - MTERF Frame_Shift_Del p.R387Dfs*6 0.12 TCGA-F1-A448-01 7 94185017 94185017 T - CASD1 Frame_Shift_Del p.C783Vfs*21 0.11 TCGA-F1-A448-01 7 98460917 98460917 G A TMEM130 Silent p.P64P 0.20 TCGA-F1-A448-01 8 100883725 100883725 G A VPS13B Missense_Mutation p.V3874M 0.14 deleterious(0.01) possibly_damaging(0.623) TCGA-F1-A448-01 8 100883773 100883773 C T VPS13B Silent p.L3890L 0.10 TCGA-F1-A448-01 8 103289349 103289349 T - UBR5 Frame_Shift_Del p.E2121Kfs*28 0.20 TCGA-F1-A448-01 8 113516058 113516058 C A CSMD3 Nonsense_Mutation p.G1682* 0.06 TCGA-F1-A448-01 8 116427277 116427277 G A TRPS1 Silent p.N953N 0.06 TCGA-F1-A448-01 8 120430438 120430438 C T NOV Missense_Mutation p.P151S 0.06 deleterious(0) probably_damaging(1) TCGA-F1-A448-01 8 121535566 121535566 G A MTBP Missense_Mutation p.S902N 0.04 tolerated(0.24) possibly_damaging(0.859) TCGA-F1-A448-01 8 124266068 124266071 AACT - ZHX1 Frame_Shift_Del p.S706Gfs*14 0.11 TCGA-F1-A448-01 8 133141499 133141499 G A KCNQ3 3'UTR 0.08 TCGA-F1-A448-01 8 139164494 139164494 C T FAM135B Missense_Mutation p.G742S 0.06 deleterious(0.01) probably_damaging(0.947) TCGA-F1-A448-01 8 139611135 139611135 G A COL22A1 Missense_Mutation p.P1398S 0.09 unknown(0) TCGA-F1-A448-01 8 142228256 142228256 G A SLC45A4 Missense_Mutation p.R444C 0.15 deleterious(0.01) benign(0.169) TCGA-F1-A448-01 8 144658644 144658644 T C NAPRT1 Missense_Mutation p.Q327R 0.12 deleterious(0.01) probably_damaging(0.912) TCGA-F1-A448-01 8 144993671 144993671 A G PLEC Missense_Mutation p.Y3577H 0.15 probably_damaging(0.986) TCGA-F1-A448-01 8 144997429 144997429 C T PLEC Missense_Mutation p.R2360H 0.20 probably_damaging(0.972) TCGA-F1-A448-01 8 145535422 145535422 G A HSF1 Missense_Mutation p.A254T 0.08 tolerated(0.2) benign(0.001) TCGA-F1-A448-01 8 145661198 145661198 C T TONSL Missense_Mutation p.R873H 0.23 deleterious(0.02) benign(0.386) TCGA-F1-A448-01 8 145730163 145730163 C A GPT Missense_Mutation p.L88I 0.08 deleterious(0.05) possibly_damaging(0.594) TCGA-F1-A448-01 8 1626408 1626408 G A DLGAP2 Missense_Mutation p.V693I 0.11 deleterious(0) probably_damaging(0.999) TCGA-F1-A448-01 8 18729842 18729842 G A PSD3 Missense_Mutation p.R178C 0.08 tolerated_low_confidence(0.13) benign(0.001) TCGA-F1-A448-01 8 22476454 22476454 T C CCAR2 Missense_Mutation p.L816P 0.05 deleterious(0) probably_damaging(0.992) TCGA-F1-A448-01 8 24188772 24188772 A G ADAM28 Missense_Mutation p.I405V 0.09 tolerated(0.32) benign(0.025) TCGA-F1-A448-01 8 27373847 27373847 T A EPHX2 Missense_Mutation p.L281Q 0.13 deleterious(0) probably_damaging(0.997) TCGA-F1-A448-01 8 27995410 27995410 T C ELP3 Splice_Site p.X367_splice 0.16 TCGA-F1-A448-01 8 30924662 30924662 T C WRN Silent p.T206T 0.08 TCGA-F1-A448-01 8 32618031 32618031 C T NRG1 Intron 0.23 TCGA-F1-A448-01 8 3263606 3263606 T C CSMD1 Missense_Mutation p.T737A 0.07 benign(0.015) TCGA-F1-A448-01 8 36664916 36664916 C T KCNU1 Missense_Mutation p.R202C 0.11 deleterious(0) probably_damaging(1) TCGA-F1-A448-01 8 37696570 37696570 G A GPR124 Missense_Mutation p.A786T 0.10 tolerated(1) benign(0.007) TCGA-F1-A448-01 8 42039487 42039487 A G PLAT Missense_Mutation p.L286P 0.10 tolerated(0.05) benign(0.35) TCGA-F1-A448-01 8 42828542 42828542 C T HOOK3 Silent p.D411D 0.16 TCGA-F1-A448-01 8 48625311 48625311 A G SPIDR Missense_Mutation p.R689G 0.09 tolerated(0.93) benign(0) TCGA-F1-A448-01 8 49647703 49647703 C T EFCAB1 Missense_Mutation p.R3H 0.08 deleterious(0) probably_damaging(0.977) TCGA-F1-A448-01 8 61655342 61655342 G A CHD7 Missense_Mutation p.G451S 0.18 possibly_damaging(0.855) TCGA-F1-A448-01 8 6264196 6264196 C - MCPH1 Frame_Shift_Del p.I5Sfs*2 0.11 TCGA-F1-A448-01 8 67352398 67352398 T C ADHFE1 Missense_Mutation p.C21R 0.10 tolerated(0.05) benign(0) TCGA-F1-A448-01 8 67955532 67955532 G T COPS5 Missense_Mutation p.A314D 0.08 tolerated(0.3) benign(0.09) TCGA-F1-A448-01 8 68204129 68204129 C G ARFGEF1 Missense_Mutation p.S290T 0.09 tolerated(0.38) benign(0.001) TCGA-F1-A448-01 8 71646526 71646526 T C XKR9 Missense_Mutation p.L330P 0.23 deleterious(0.02) possibly_damaging(0.827) TCGA-F1-A448-01 8 73958323 73958323 G T TERF1 Missense_Mutation p.W424L 0.12 deleterious(0) probably_damaging(1) TCGA-F1-A448-01 8 74209656 74209656 C T RDH10 Missense_Mutation p.H173Y 0.07 deleterious(0.01) possibly_damaging(0.479) TCGA-F1-A448-01 8 79629711 79629711 C T ZC2HC1A Nonsense_Mutation p.R321* 0.06 TCGA-F1-A448-01 8 92346557 92346557 T C SLC26A7 Missense_Mutation p.V226A 0.12 tolerated(0.16) benign(0.084) TCGA-F1-A448-01 8 93017291 93017291 C T RUNX1T1 Intron 0.06 TCGA-F1-A448-01 8 97269296 97269296 C A MTERFD1 Missense_Mutation p.E127D 0.11 tolerated(0.19) benign(0.058) TCGA-F1-A448-01 9 103065973 103065973 G T TEX10 Missense_Mutation p.L873I 0.09 deleterious(0.03) possibly_damaging(0.742) TCGA-F1-A448-01 9 104184044 104184044 A G ALDOB 3'UTR 0.14 TCGA-F1-A448-01 9 107380214 107380214 G T OR13C9 Missense_Mutation p.T91N 0.05 tolerated(0.14) possibly_damaging(0.543) TCGA-F1-A448-01 9 112216842 112216842 C T PTPN3 Missense_Mutation p.C101Y 0.07 tolerated(1) possibly_damaging(0.493) TCGA-F1-A448-01 9 114508553 114508553 G A C9orf84 Missense_Mutation p.T283I 0.08 deleterious(0.01) benign(0.107) TCGA-F1-A448-01 9 116973274 116973274 G A COL27A1 Missense_Mutation p.V779I 0.10 unknown(0) TCGA-F1-A448-01 9 117389184 117389184 G A C9orf91 Silent p.P74P 0.05 TCGA-F1-A448-01 9 120476352 120476352 T G TLR4 Missense_Mutation p.V649G 0.13 deleterious(0.03) benign(0.005) TCGA-F1-A448-01 9 125551964 125551964 C T OR5C1 Silent p.A251A 0.09 TCGA-F1-A448-01 9 125863866 125863866 C T RABGAP1 Missense_Mutation p.R971W 0.08 deleterious(0.01) benign(0.165) TCGA-F1-A448-01 9 127651570 127651570 G A GOLGA1 Missense_Mutation p.A538V 0.14 tolerated(0.52) benign(0.011) TCGA-F1-A448-01 9 131589325 131589325 C A C9orf114 Missense_Mutation p.E118D 0.07 tolerated(0.52) benign(0.005) TCGA-F1-A448-01 9 133914413 133914413 G A LAMC3 Missense_Mutation p.C380Y 0.12 deleterious(0) probably_damaging(0.996) TCGA-F1-A448-01 9 137778354 137778354 C T FCN2 Missense_Mutation p.A213V 0.10 tolerated(0.09) possibly_damaging(0.502) TCGA-F1-A448-01 9 138594140 138594140 C T KCNT1 Silent p.G12G 0.12 TCGA-F1-A448-01 9 139371919 139371919 G A SEC16A Missense_Mutation p.P50L 0.14 deleterious(0) probably_damaging(0.999) TCGA-F1-A448-01 9 139395053 139395053 C T NOTCH1 Missense_Mutation p.R1962H 0.06 deleterious(0.01) benign(0.231) TCGA-F1-A448-01 9 139612106 139612106 C T FAM69B Silent p.Y47Y 0.11 TCGA-F1-A448-01 9 139747775 139747775 G A MAMDC4 Missense_Mutation p.A65T 0.07 tolerated(1) benign(0.005) TCGA-F1-A448-01 9 139840987 139840987 T C C8G Silent p.T175T 0.13 TCGA-F1-A448-01 9 139910181 139910181 C T ABCA2 Missense_Mutation p.V1154M 0.12 deleterious(0) probably_damaging(0.993) TCGA-F1-A448-01 9 140077586 140077586 C T ANAPC2 Missense_Mutation p.R426H 0.15 tolerated(0.15) benign(0.041) TCGA-F1-A448-01 9 140685301 140685301 C T EHMT1 Missense_Mutation p.A795V 0.07 deleterious(0.01) probably_damaging(0.991) TCGA-F1-A448-01 9 15971659 15971659 C T CCDC171 Missense_Mutation p.P1269L 0.06 tolerated_low_confidence(0.89) benign(0.1) TCGA-F1-A448-01 9 23704955 23704955 G A ELAVL2 Missense_Mutation p.R150C 0.05 deleterious(0) possibly_damaging(0.85) TCGA-F1-A448-01 9 32632794 32632794 A - TAF1L Frame_Shift_Del p.F928Lfs*13 0.09 TCGA-F1-A448-01 9 34709366 34709366 C A CCL21 3'UTR 0.12 TCGA-F1-A448-01 9 35609103 35609103 G T TESK1 Missense_Mutation p.Q415H 0.07 tolerated(0.19) benign(0) TCGA-F1-A448-01 9 35609490 35609490 G A TESK1 Silent p.A544A 0.11 TCGA-F1-A448-01 9 35852919 35852919 C T TMEM8B Silent p.S305S 0.10 TCGA-F1-A448-01 9 37744455 37744455 C A FRMPD1 Missense_Mutation p.P809H 0.07 tolerated(0.13) benign(0.443) TCGA-F1-A448-01 9 5231550 5231550 G A INSL4 Silent p.L9L 0.10 TCGA-F1-A448-01 9 6013035 6013037 AAT - RANBP6 In_Frame_Del p.L857del 0.08 TCGA-F1-A448-01 9 71990713 71990713 C T FAM189A2 Missense_Mutation p.T62I 0.10 deleterious(0.02) possibly_damaging(0.793) TCGA-F1-A448-01 9 72131523 72131523 C A APBA1 Missense_Mutation p.G202W 0.21 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-F1-A448-01 9 73225553 73225553 G A TRPM3 Missense_Mutation p.A868V 0.06 deleterious(0.02) benign(0.138) TCGA-F1-A448-01 9 77599854 77599854 T - C9orf41 Frame_Shift_Del p.N366Tfs*10 0.10 TCGA-F1-A448-01 9 79469111 79469111 C T PRUNE2 Missense_Mutation p.R17H 0.18 tolerated(0.09) possibly_damaging(0.847) TCGA-F1-A448-01 9 91615967 91615967 A G S1PR3 5'UTR 0.33 TCGA-F1-A448-01 9 97082562 97082562 G A NUTM2F Silent p.D432D 0.07 TCGA-F1-A448-01 X 112021737 112021737 A G AMOT 3'UTR 0.20 TCGA-F1-A448-01 X 125298659 125298659 A G DCAF12L2 Missense_Mutation p.W417R 0.19 deleterious(0.03) benign(0.126) TCGA-F1-A448-01 X 125299569 125299569 G A DCAF12L2 Silent p.C113C 0.33 TCGA-F1-A448-01 X 125686201 125686201 C T DCAF12L1 Missense_Mutation p.A131T 0.29 tolerated(1) benign(0) TCGA-F1-A448-01 X 129054501 129054501 T C UTP14A Missense_Mutation p.V274A 0.20 tolerated(0.64) benign(0.007) TCGA-F1-A448-01 X 132548849 132548849 G - GPC4 Frame_Shift_Del p.L49Sfs*9 0.19 TCGA-F1-A448-01 X 1327751 1327751 C T CRLF2 Missense_Mutation p.V44M 0.06 deleterious(0) probably_damaging(0.997) TCGA-F1-A448-01 X 13337597 13337597 C T ATXN3L Missense_Mutation p.A153T 0.17 tolerated(0.08) benign(0.011) TCGA-F1-A448-01 X 140992837 140992837 G A MAGEC1 5'UTR 0.21 TCGA-F1-A448-01 X 153762284 153762284 G A G6PD Missense_Mutation p.R276C 0.14 deleterious(0) probably_damaging(1) TCGA-F1-A448-01 X 208208 208208 C T PLCXD1 Missense_Mutation p.R146C 0.12 deleterious(0.02) benign(0.035) TCGA-F1-A448-01 X 37029653 37029653 A T FAM47C 3'UTR 0.12 TCGA-F1-A448-01 X 39931667 39931667 T A BCOR Nonsense_Mutation p.K978* 0.39 TCGA-F1-A448-01 X 6452058 6452058 C T VCX3A Missense_Mutation p.E97K 0.29 tolerated(0.06) unknown(0) TCGA-F1-A448-01 X 64722706 64722707 TA - ZC3H12B Frame_Shift_Del p.Y710* 0.32 TCGA-F1-A448-01 X 70823565 70823565 A G ACRC Silent p.S146S 0.12 TCGA-F1-A448-01 X 74644604 74644604 C T ZDHHC15 Missense_Mutation p.V207I 0.25 tolerated(0.14) benign(0.01) TCGA-F1-A448-01 X 91132396 91132396 C T PCDH11X Missense_Mutation p.T386M 0.23 tolerated(0.07) benign(0.152) TCGA-F1-A448-01 Y 6736349 6736349 A G AMELY Missense_Mutation p.L101P 0.23 tolerated(0.13) probably_damaging(0.921) TCGA-F1-A72C-01 10 34630573 34630573 A T PARD3 Missense_Mutation p.I800N 0.14 deleterious(0.02) benign(0.162) TCGA-F1-A72C-01 10 64960412 64960412 T C JMJD1C Silent p.K1700K 0.33 TCGA-F1-A72C-01 10 75854112 75854112 G A VCL Missense_Mutation p.R479Q 0.20 tolerated(0.69) benign(0.169) TCGA-F1-A72C-01 11 36614616 36614616 G A RAG2 Missense_Mutation p.S368L 0.05 deleterious(0.01) probably_damaging(0.997) TCGA-F1-A72C-01 11 55541117 55541117 G T OR5D13 Missense_Mutation p.L68F 0.07 deleterious(0) probably_damaging(1) TCGA-F1-A72C-01 11 56510828 56510828 C T OR9G4 Missense_Mutation p.A154T 0.19 tolerated(0.09) benign(0.002) TCGA-F1-A72C-01 11 60165404 60165404 G T MS4A14 Missense_Mutation p.R73I 0.07 tolerated(0.1) benign(0.221) TCGA-F1-A72C-01 12 102069089 102069089 A G MYBPC1 Silent p.Q936Q 0.26 TCGA-F1-A72C-01 12 131471847 131471847 G A GPR133 Missense_Mutation p.R233Q 0.09 deleterious(0.01) probably_damaging(0.984) TCGA-F1-A72C-01 12 18891122 18891122 T A CAPZA3 5'UTR 0.15 TCGA-F1-A72C-01 12 2602428 2602428 C T CACNA1C Missense_Mutation p.T330M 0.32 tolerated(0.07) possibly_damaging(0.827) TCGA-F1-A72C-01 12 40076540 40076540 A - C12orf40 Frame_Shift_Del p.N273Mfs*12 0.17 TCGA-F1-A72C-01 12 46245464 46245465 TG - ARID2 Frame_Shift_Del p.V1187Efs*53 0.19 TCGA-F1-A72C-01 12 53169375 53169375 C T KRT76 Silent p.L204L 0.21 TCGA-F1-A72C-01 12 56847486 56847486 C T MIP Silent p.T138T 0.15 TCGA-F1-A72C-01 14 42360614 42360614 G A LRFN5 Missense_Mutation p.R516H 0.18 tolerated(0.13) benign(0.072) TCGA-F1-A72C-01 14 60194283 60194283 G A RTN1 Silent p.N373N 0.16 TCGA-F1-A72C-01 15 28901043 28901043 G C HERC2P9 RNA 0.10 TCGA-F1-A72C-01 16 49430513 49430513 A G C16orf78 Missense_Mutation p.S192G 0.07 deleterious(0.01) benign(0.056) TCGA-F1-A72C-01 16 70302204 70302204 A T AARS Silent p.A347A 0.22 TCGA-F1-A72C-01 16 70902553 70902553 C T HYDIN Missense_Mutation p.D3744N 0.12 probably_damaging(0.913) TCGA-F1-A72C-01 16 70977789 70977789 C T HYDIN Missense_Mutation p.G2199R 0.19 probably_damaging(0.966) TCGA-F1-A72C-01 17 62504717 62504717 A C CEP95 Silent p.V9V 0.19 TCGA-F1-A72C-01 17 7578236 7578236 A G TP53 Missense_Mutation p.Y205H 0.23 deleterious(0.01) benign(0.387) TCGA-F1-A72C-01 18 48593466 48593466 C T SMAD4 Missense_Mutation p.A406V 0.19 tolerated(0.09) probably_damaging(0.956) TCGA-F1-A72C-01 19 31767990 31767990 G T TSHZ3 Silent p.L903L 0.12 TCGA-F1-A72C-01 19 38949967 38949967 G A RYR1 Silent p.S783S 0.25 TCGA-F1-A72C-01 19 53432428 53432428 G C ZNF321P Missense_Mutation p.Q144E 0.12 tolerated(0.32) benign(0.03) TCGA-F1-A72C-01 19 56164127 56164127 C T CCDC106 3'UTR 0.22 TCGA-F1-A72C-01 19 58187555 58187555 C T ZSCAN4 Silent p.S14S 0.26 TCGA-F1-A72C-01 1 118642367 118642367 G A SPAG17 Missense_Mutation p.P231S 0.15 tolerated(0.05) probably_damaging(0.999) TCGA-F1-A72C-01 1 219347304 219347304 G T LYPLAL1 Silent p.L24L 0.19 TCGA-F1-A72C-01 20 44983770 44983770 C G SLC35C2 Silent p.S173S 0.14 TCGA-F1-A72C-01 20 58564217 58564217 A C CDH26 Silent p.R428R 0.14 TCGA-F1-A72C-01 22 20937477 20937477 C G MED15 Missense_Mutation p.L539V 0.12 deleterious(0) probably_damaging(0.999) TCGA-F1-A72C-01 22 40066157 40066157 T A CACNA1I Missense_Mutation p.C1437S 0.19 deleterious(0) benign(0.152) TCGA-F1-A72C-01 22 51160799 51160799 A - SHANK3 Frame_Shift_Del p.E1529Gfs*31 0.13 TCGA-F1-A72C-01 2 1544474 1544474 C T TPO Silent p.A909A 0.09 TCGA-F1-A72C-01 2 202598034 202598034 T C ALS2 Missense_Mutation p.K849E 0.20 deleterious(0.03) benign(0.003) TCGA-F1-A72C-01 2 71827926 71827926 C T DYSF Missense_Mutation p.P1284L 0.23 tolerated(0.28) benign(0.001) TCGA-F1-A72C-01 3 141499618 141499618 G A GRK7 Missense_Mutation p.V339M 0.15 tolerated(0.06) possibly_damaging(0.627) TCGA-F1-A72C-01 3 179052060 179052063 TGAA - ZNF639 Frame_Shift_Del p.E437Ifs*13 0.19 TCGA-F1-A72C-01 3 49688128 49688128 C A BSN Silent p.P534P 0.05 TCGA-F1-A72C-01 4 114899858 114899858 A G ARSJ Missense_Mutation p.S45P 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.809) TCGA-F1-A72C-01 4 6083476 6083476 G A JAKMIP1 Missense_Mutation p.R321C 0.23 deleterious(0) probably_damaging(0.949) TCGA-F1-A72C-01 5 161324319 161324319 G A GABRA1 Missense_Mutation p.R421Q 0.18 tolerated(0.19) probably_damaging(0.988) TCGA-F1-A72C-01 5 42695143 42695143 A G GHR Missense_Mutation p.S131G 0.15 tolerated(0.22) benign(0.121) TCGA-F1-A72C-01 5 74880598 74880598 G A POLK Missense_Mutation p.G358E 0.10 deleterious(0) probably_damaging(1) TCGA-F1-A72C-01 5 7859501 7859501 C T FASTKD3 3'UTR 0.11 TCGA-F1-A72C-01 5 79032637 79032637 A C CMYA5 Missense_Mutation p.K2683N 0.11 unknown(0) TCGA-F1-A72C-01 5 89971103 89971103 C T GPR98 Silent p.D1718D 0.09 TCGA-F1-A72C-01 6 43005572 43005572 T A CUL7 Missense_Mutation p.T1735S 0.17 tolerated(0.14) benign(0.445) TCGA-F1-A72C-01 7 132174131 132174131 G T PLXNA4 Missense_Mutation p.R431S 0.05 tolerated(0.15) possibly_damaging(0.794) TCGA-F1-A72C-01 7 132481337 132481337 G A CHCHD3 Nonsense_Mutation p.R176* 0.21 TCGA-F1-A72C-01 7 15652021 15652021 C T MEOX2 Silent p.A302A 0.12 TCGA-F1-A72C-01 7 49815072 49815072 G A VWC2 Missense_Mutation p.S14N 0.19 tolerated_low_confidence(0.14) benign(0.15) TCGA-F1-A72C-01 7 94232678 94232678 T G SGCE Missense_Mutation p.Q250P 0.12 deleterious(0.05) probably_damaging(0.979) TCGA-F1-A72C-01 8 131861965 131861965 T A ADCY8 Missense_Mutation p.K765N 0.26 deleterious(0.01) benign(0) TCGA-F1-A72C-01 8 145001649 145001649 G A PLEC Missense_Mutation p.R1366W 0.24 unknown(0) TCGA-F1-A72C-01 8 145746556 145746556 C T LRRC14 Silent p.C392C 0.23 TCGA-F1-A72C-01 8 17611599 17611599 T C MTUS1 Missense_Mutation p.K573R 0.20 deleterious(0.01) probably_damaging(0.919) TCGA-F1-A72C-01 8 22428629 22428629 C G SORBS3 Silent p.P546P 0.23 TCGA-F1-A72C-01 8 30701750 30701750 G A TEX15 Missense_Mutation p.A1595V 0.04 tolerated(0.15) benign(0.035) TCGA-F1-A72C-01 8 87076706 87076706 G A PSKH2 Missense_Mutation p.R114W 0.21 tolerated(0.05) possibly_damaging(0.584) TCGA-F1-A72C-01 9 124544665 124544665 C T DAB2IP Missense_Mutation p.T1125I 0.24 deleterious(0) possibly_damaging(0.471) TCGA-F1-A72C-01 9 139752164 139752165 - CC MAMDC4 Frame_Shift_Ins p.S795Pfs*3 0.12 TCGA-F1-A72C-01 9 15468821 15468824 ACTA - PSIP1 Frame_Shift_Del p.S409Rfs*2 0.19 TCGA-FP-7735-01 10 114136092 114136092 C T ACSL5 Missense_Mutation p.L9F 0.05 tolerated_low_confidence(0.19) possibly_damaging(0.765) TCGA-FP-7735-01 10 118424407 118424407 G T C10orf82 Missense_Mutation p.A109E 0.43 tolerated(0.15) possibly_damaging(0.804) TCGA-FP-7735-01 10 124457429 124457429 G A C10orf120 Silent p.I276I 0.49 TCGA-FP-7735-01 10 14976747 14976747 C T DCLRE1C Silent p.L164L 0.26 TCGA-FP-7735-01 10 51827887 51827887 A G FAM21A Missense_Mutation p.Q9R 0.30 tolerated_low_confidence(0.11) benign(0.371) TCGA-FP-7735-01 10 52003054 52003054 G A ASAH2 Missense_Mutation p.R140C 0.31 deleterious(0) probably_damaging(1) TCGA-FP-7735-01 10 61932869 61932869 C G ANK3 Missense_Mutation p.A754P 0.09 probably_damaging(1) TCGA-FP-7735-01 10 89653785 89653785 T G PTEN Missense_Mutation p.I28S 0.09 deleterious(0) probably_damaging(0.922) TCGA-FP-7735-01 10 91162119 91162119 C T IFIT1 Silent p.D29D 0.37 TCGA-FP-7735-01 11 113853876 113853876 G A HTR3A Missense_Mutation p.V143M 0.43 deleterious(0) probably_damaging(0.972) TCGA-FP-7735-01 11 22363309 22363309 G A SLC17A6 Missense_Mutation p.G108S 0.58 deleterious(0.03) benign(0.158) TCGA-FP-7735-01 11 55890333 55890333 C T OR8H3 Missense_Mutation p.S162F 0.04 tolerated(1) benign(0.001) TCGA-FP-7735-01 11 62394519 62394519 C T GANAB Splice_Site p.X796_splice 0.10 TCGA-FP-7735-01 12 10215774 10215774 C T CLEC9A Missense_Mutation p.T147M 0.26 tolerated(0.11) possibly_damaging(0.759) TCGA-FP-7735-01 12 56495354 56495354 C G ERBB3 Missense_Mutation p.L1182V 0.43 tolerated(0.37) benign(0.048) TCGA-FP-7735-01 13 21555776 21555776 T C LATS2 Missense_Mutation p.R832G 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-FP-7735-01 13 45578502 45578502 G A GPALPP1 Missense_Mutation p.E51K 0.06 tolerated(0.31) benign(0.014) TCGA-FP-7735-01 14 106622134 106622134 C T IGHV3-16 Silent p.L37L 0.07 TCGA-FP-7735-01 15 43021535 43021535 C T CDAN1 Silent p.S811S 0.37 TCGA-FP-7735-01 15 57511694 57511694 C A TCF12 Intron 0.33 TCGA-FP-7735-01 15 90347484 90347484 C A ANPEP Missense_Mutation p.Q393H 0.10 deleterious(0.01) probably_damaging(0.94) TCGA-FP-7735-01 16 22268610 22268610 C T EEF2K Nonsense_Mutation p.Q269* 0.05 TCGA-FP-7735-01 16 2283951 2283951 G A E4F1 Silent p.P445P 0.13 TCGA-FP-7735-01 17 19555900 19555900 T A ALDH3A2 Missense_Mutation p.N142K 0.04 tolerated(0.09) benign(0.016) TCGA-FP-7735-01 17 19844304 19844304 G T AKAP10 Silent p.R361R 0.07 TCGA-FP-7735-01 17 45198297 45198297 G A CDC27 3'UTR 0.14 TCGA-FP-7735-01 17 45757454 45757454 G A KPNB1 Missense_Mutation p.E808K 0.44 tolerated(0.4) benign(0.015) TCGA-FP-7735-01 17 6021341 6021341 G A WSCD1 Missense_Mutation p.R403Q 0.17 deleterious(0.02) possibly_damaging(0.903) TCGA-FP-7735-01 17 7578413 7578413 C T TP53 Missense_Mutation p.V173M 0.45 deleterious(0.02) probably_damaging(1) TCGA-FP-7735-01 17 8349043 8349043 G A NDEL1 Missense_Mutation p.R34Q 0.44 tolerated(1) benign(0) TCGA-FP-7735-01 18 29055712 29055712 C T DSG3 Missense_Mutation p.S830F 0.12 deleterious(0) probably_damaging(0.963) TCGA-FP-7735-01 18 65180427 65180427 G T DSEL Missense_Mutation p.N483K 0.08 deleterious(0) probably_damaging(0.999) TCGA-FP-7735-01 19 11556203 11556203 G A PRKCSH Splice_Site p.X200_splice 0.08 TCGA-FP-7735-01 19 15512388 15512388 G A AKAP8L Missense_Mutation p.S130L 0.22 deleterious(0) probably_damaging(0.996) TCGA-FP-7735-01 19 17122279 17122279 C T CPAMD8 Missense_Mutation p.E208K 0.05 tolerated(0.12) benign(0.064) TCGA-FP-7735-01 19 36349318 36349318 C T KIRREL2 Missense_Mutation p.R74W 0.59 deleterious(0) probably_damaging(1) TCGA-FP-7735-01 19 36370317 36370317 T C APLP1 Missense_Mutation p.Y644H 0.07 deleterious(0) probably_damaging(0.999) TCGA-FP-7735-01 19 45567385 45567385 G A CLASRP Missense_Mutation p.A341T 0.11 tolerated(0.11) benign(0.011) TCGA-FP-7735-01 19 49797748 49797748 G A SLC6A16 Missense_Mutation p.P431L 0.11 deleterious(0) probably_damaging(0.999) TCGA-FP-7735-01 19 49850456 49850456 G C TEAD2 Silent p.V304V 0.03 TCGA-FP-7735-01 19 9018164 9018164 G A MUC16 Silent p.L12592L 0.05 TCGA-FP-7735-01 1 115266562 115266562 C T CSDE1 Silent p.L651L 0.07 TCGA-FP-7735-01 1 115453042 115453042 G A SYCP1 Missense_Mutation p.E449K 0.06 tolerated(0.3) probably_damaging(1) TCGA-FP-7735-01 1 152286012 152286012 G T FLG Missense_Mutation p.H450Q 0.09 possibly_damaging(0.777) TCGA-FP-7735-01 1 186158760 186158760 G A HMCN1 Missense_Mutation p.R5553Q 0.33 probably_damaging(0.921) TCGA-FP-7735-01 1 232144528 232144528 C T DISC1 Intron 0.19 TCGA-FP-7735-01 1 65871724 65871724 A - DNAJC6 Frame_Shift_Del p.H800Pfs*12 0.38 TCGA-FP-7735-01 1 94546153 94546153 G A ABCA4 Missense_Mutation p.P327L 0.35 deleterious(0) possibly_damaging(0.806) TCGA-FP-7735-01 21 43531059 43531059 C T UMODL1 Missense_Mutation p.T576M 0.37 tolerated(0.15) possibly_damaging(0.897) TCGA-FP-7735-01 22 38074508 38074508 C T LGALS1 Silent p.G36G 0.56 TCGA-FP-7735-01 2 100181979 100181979 G A AFF3 Missense_Mutation p.T1055M 0.07 deleterious(0.03) benign(0.396) TCGA-FP-7735-01 2 192700704 192700704 C T SDPR Missense_Mutation p.R408H 0.43 deleterious_low_confidence(0.02) benign(0.383) TCGA-FP-7735-01 2 196548511 196548511 C T SLC39A10 Missense_Mutation p.A366V 0.06 deleterious(0) probably_damaging(0.998) TCGA-FP-7735-01 2 95841966 95841966 G C ZNF2 5'UTR 0.03 TCGA-FP-7735-01 2 97271204 97271204 G T KANSL3 Missense_Mutation p.L596I 0.27 deleterious_low_confidence(0.01) probably_damaging(0.979) TCGA-FP-7735-01 3 153973256 153973256 C T ARHGEF26 Silent p.N870N 0.40 TCGA-FP-7735-01 4 120177442 120177442 C G USP53 Missense_Mutation p.S138R 0.06 deleterious(0.04) possibly_damaging(0.876) TCGA-FP-7735-01 4 39458038 39458038 G C RPL9 Missense_Mutation p.R127G 0.35 tolerated(0.27) benign(0.104) TCGA-FP-7735-01 5 112175944 112175945 AG - APC Frame_Shift_Del p.E1552Gfs*6 0.23 TCGA-FP-7735-01 6 109274511 109274511 G A ARMC2 Silent p.L624L 0.49 TCGA-FP-7735-01 6 111214017 111214017 G T AMD1 Missense_Mutation p.G232V 0.44 deleterious(0) probably_damaging(1) TCGA-FP-7735-01 6 27777970 27777970 A C HIST1H3H Missense_Mutation p.H40P 0.19 deleterious_low_confidence(0.01) benign(0.034) TCGA-FP-7735-01 6 54034364 54034364 C A MLIP Silent p.T311T 0.31 TCGA-FP-7735-01 6 64410303 64410303 G A PHF3 Missense_Mutation p.E1016K 0.07 deleterious(0.02) probably_damaging(1) TCGA-FP-7735-01 7 158476040 158476040 G A NCAPG2 Silent p.H292H 0.07 TCGA-FP-7735-01 7 45143999 45143999 C A TBRG4 Intron 0.05 TCGA-FP-7735-01 8 121256220 121256220 G A COL14A1 Missense_Mutation p.V818I 0.30 tolerated(0.21) possibly_damaging(0.906) TCGA-FP-7735-01 8 143623631 143623631 G C BAI1 Missense_Mutation p.V1346L 0.07 tolerated(0.1) benign(0.167) TCGA-FP-7735-01 8 27884560 27884560 C T NUGGC Missense_Mutation p.V722M 0.40 tolerated(0.2) benign(0.005) TCGA-FP-7735-01 8 48740855 48740855 C T PRKDC Silent p.L2816L 0.22 TCGA-FP-7735-01 9 5810125 5810125 A C ERMP1 Missense_Mutation p.I478M 0.44 tolerated(0.08) benign(0.082) TCGA-FP-7735-01 X 134986673 134986673 A T SAGE1 Silent p.I86I 0.62 TCGA-FP-7735-01 X 153134082 153134082 G A L1CAM Missense_Mutation p.R494C 0.10 tolerated(0.18) possibly_damaging(0.67) TCGA-FP-7829-01 10 101825124 101825124 C T CPN1 Missense_Mutation p.E194K 0.38 tolerated(0.08) possibly_damaging(0.844) TCGA-FP-7829-01 10 108389086 108389086 C T SORCS1 Missense_Mutation p.V846I 0.24 tolerated(0.1) benign(0.281) TCGA-FP-7829-01 10 118434850 118434850 C A HSPA12A Silent p.L490L 0.26 TCGA-FP-7829-01 10 123844926 123844926 G T TACC2 Missense_Mutation p.D971Y 0.59 possibly_damaging(0.885) TCGA-FP-7829-01 10 124339248 124339248 C A DMBT1 Silent p.G278G 0.24 TCGA-FP-7829-01 10 131671794 131671794 G A EBF3 Missense_Mutation p.H235Y 0.45 deleterious(0) benign(0.039) TCGA-FP-7829-01 10 134755211 134755211 C T TTC40 Missense_Mutation p.V64M 0.37 tolerated(0.77) benign(0.063) TCGA-FP-7829-01 10 21104554 21104554 C T NEBL Silent p.S747S 0.53 TCGA-FP-7829-01 10 27057879 27057879 T C ABI1 Silent p.P207P 0.70 TCGA-FP-7829-01 10 37506754 37506754 C - ANKRD30A Frame_Shift_Del p.A1016Vfs*7 0.27 TCGA-FP-7829-01 10 45427458 45427458 C T TMEM72 Silent p.A50A 0.10 TCGA-FP-7829-01 10 50854647 50854647 G T CHAT Missense_Mutation p.R403M 0.27 tolerated(0.46) possibly_damaging(0.571) TCGA-FP-7829-01 10 64415217 64415217 A C ZNF365 Intron 0.47 TCGA-FP-7829-01 10 68687350 68687350 C A LRRTM3 Missense_Mutation p.P226T 0.38 deleterious(0) probably_damaging(1) TCGA-FP-7829-01 10 85981612 85981612 G T LRIT2 3'UTR 0.28 TCGA-FP-7829-01 11 100221534 100221534 A C CNTN5 Missense_Mutation p.E1044D 0.80 deleterious(0.04) benign(0.083) TCGA-FP-7829-01 11 118253350 118253350 G A UBE4A Missense_Mutation p.A693T 0.82 deleterious(0) probably_damaging(0.963) TCGA-FP-7829-01 11 118454629 118454629 G A ARCN1 Missense_Mutation p.G185R 0.77 deleterious(0.03) probably_damaging(0.965) TCGA-FP-7829-01 11 124267190 124267190 G T OR8B3 Missense_Mutation p.H20N 0.90 deleterious_low_confidence(0.05) benign(0) TCGA-FP-7829-01 11 1272662 1272662 C T MUC5B Missense_Mutation p.P4851L 0.20 unknown(0) TCGA-FP-7829-01 11 130011402 130011402 G A APLP2 Missense_Mutation p.E657K 0.77 tolerated(0.15) possibly_damaging(0.679) TCGA-FP-7829-01 11 5566174 5566174 G T OR52H1 Missense_Mutation p.Q194K 0.23 tolerated(0.16) benign(0.01) TCGA-FP-7829-01 11 6048513 6048513 G A OR56A1 Missense_Mutation p.S141F 0.24 deleterious(0.02) possibly_damaging(0.48) TCGA-FP-7829-01 11 61081144 61081144 G T DDB1 Silent p.G632G 0.28 TCGA-FP-7829-01 11 61729788 61729788 G C BEST1 Missense_Mutation p.G328R 0.21 tolerated(0.08) probably_damaging(0.949) TCGA-FP-7829-01 11 65402868 65402868 G C PCNXL3 Missense_Mutation p.E1711D 0.19 deleterious(0.02) benign(0.401) TCGA-FP-7829-01 11 709560 709560 C T EPS8L2 Silent p.L18L 0.78 TCGA-FP-7829-01 11 82444664 82444664 G A FAM181B Silent p.C36C 0.64 TCGA-FP-7829-01 11 8284922 8284922 G A LMO1 5'UTR 0.27 TCGA-FP-7829-01 12 122219165 122219165 G A TMEM120B 3'UTR 0.80 TCGA-FP-7829-01 12 125453471 125453471 C A DHX37 Missense_Mutation p.R412L 0.27 deleterious(0) probably_damaging(0.988) TCGA-FP-7829-01 12 39735371 39735371 C T KIF21A Silent p.E619E 0.16 TCGA-FP-7829-01 12 8687405 8687405 G A CLEC4E Silent p.S163S 0.21 TCGA-FP-7829-01 12 91371944 91371944 T A EPYC Missense_Mutation p.E87D 0.67 tolerated(0.48) benign(0.276) TCGA-FP-7829-01 12 99020133 99020133 C T IKBIP Missense_Mutation p.A237T 0.05 tolerated(0.32) benign(0.057) TCGA-FP-7829-01 13 110436796 110436796 G A IRS2 Silent p.G535G 0.16 TCGA-FP-7829-01 13 111155584 111155584 G A COL4A2 Missense_Mutation p.G1332R 0.70 probably_damaging(0.989) TCGA-FP-7829-01 13 111286977 111286977 C T CARKD Intron 0.23 TCGA-FP-7829-01 13 112722276 112722276 G A SOX1 Missense_Mutation p.D102N 0.22 deleterious(0) probably_damaging(0.978) TCGA-FP-7829-01 13 114781717 114781717 C T RASA3 Missense_Mutation p.D413N 0.70 deleterious(0) probably_damaging(0.999) TCGA-FP-7829-01 13 30110029 30110029 G A SLC7A1 Silent p.L99L 0.12 TCGA-FP-7829-01 13 36699928 36699928 T C DCLK1 Missense_Mutation p.K116R 0.17 tolerated(0.16) unknown(0) TCGA-FP-7829-01 13 52598571 52598571 C A ALG11 Silent p.I235I 0.17 TCGA-FP-7829-01 13 78493633 78493633 C T EDNRB Missense_Mutation p.A40T 0.16 tolerated_low_confidence(0.62) benign(0.015) TCGA-FP-7829-01 13 95131262 95131262 C T DCT Missense_Mutation p.R83H 0.33 deleterious(0) probably_damaging(0.999) TCGA-FP-7829-01 14 22446955 22446955 T A TRAV8-6 Missense_Mutation p.F13I 0.53 deleterious(0.02) benign(0.105) TCGA-FP-7829-01 14 23468274 23468274 G A C14orf93 5'UTR 0.30 TCGA-FP-7829-01 14 24114538 24114538 C A DHRS2 3'UTR 0.29 TCGA-FP-7829-01 14 34269090 34269090 G A NPAS3 Missense_Mutation p.R526H 0.36 deleterious(0.03) benign(0.12) TCGA-FP-7829-01 14 35182762 35182762 A C CFL2 Silent p.S3S 0.29 TCGA-FP-7829-01 14 50154897 50154897 G A POLE2 Missense_Mutation p.R9W 0.67 deleterious(0) possibly_damaging(0.846) TCGA-FP-7829-01 14 51401876 51401876 C A PYGL Nonsense_Mutation p.E125* 0.40 TCGA-FP-7829-01 14 61512843 61512843 A G SLC38A6 Missense_Mutation p.I295V 0.51 tolerated(0.07) benign(0.02) TCGA-FP-7829-01 14 74426075 74426075 C A ENTPD5 3'Flank 0.26 TCGA-FP-7829-01 14 76964844 76964844 C T ESRRB Intron 0.40 TCGA-FP-7829-01 14 79433625 79433625 A G NRXN3 Missense_Mutation p.D578G 0.13 deleterious(0) probably_damaging(0.96) TCGA-FP-7829-01 14 93118805 93118805 G C RIN3 Missense_Mutation p.A471P 0.46 tolerated(0.08) benign(0.159) TCGA-FP-7829-01 15 24921694 24921694 C T NPAP1 Missense_Mutation p.A227V 0.54 tolerated(1) benign(0.099) TCGA-FP-7829-01 15 25925073 25925073 C A ATP10A Missense_Mutation p.Q1305H 0.50 tolerated(0.32) benign(0.027) TCGA-FP-7829-01 15 42564289 42564291 GAG - TMEM87A In_Frame_Del p.L59del 0.13 TCGA-FP-7829-01 15 42742247 42742247 T G ZNF106 Missense_Mutation p.E718D 0.45 tolerated(0.42) benign(0.015) TCGA-FP-7829-01 15 43826988 43826988 C T PPIP5K1 Missense_Mutation p.E1396K 0.52 tolerated_low_confidence(0.06) benign(0.007) TCGA-FP-7829-01 15 45386852 45386852 C T DUOX2 Missense_Mutation p.R1478Q 0.47 tolerated(0.07) probably_damaging(0.999) TCGA-FP-7829-01 15 54306946 54306946 C A UNC13C Missense_Mutation p.Q616K 0.19 tolerated_low_confidence(0.41) benign(0.034) TCGA-FP-7829-01 15 54307612 54307612 C G UNC13C Missense_Mutation p.Q838E 0.15 deleterious_low_confidence(0.01) benign(0.031) TCGA-FP-7829-01 15 63866244 63866244 G A USP3 Splice_Site p.X303_splice 0.30 TCGA-FP-7829-01 15 68120229 68120229 G T SKOR1 Missense_Mutation p.G628V 0.33 tolerated_low_confidence(0.12) probably_damaging(0.979) TCGA-FP-7829-01 15 74174028 74174028 C T TBC1D21 Missense_Mutation p.T71M 0.27 deleterious(0.04) probably_damaging(0.997) TCGA-FP-7829-01 15 74467329 74467329 G A ISLR Missense_Mutation p.V44M 0.47 deleterious(0.01) benign(0.092) TCGA-FP-7829-01 15 84582130 84582130 G A ADAMTSL3 Missense_Mutation p.G663S 0.19 deleterious(0) probably_damaging(1) TCGA-FP-7829-01 15 89392905 89392905 C T ACAN Missense_Mutation p.P657S 0.25 tolerated(0.39) unknown(0) TCGA-FP-7829-01 16 1259359 1259359 C T CACNA1H Missense_Mutation p.R1231C 0.53 deleterious(0) probably_damaging(0.983) TCGA-FP-7829-01 16 2983164 2983164 G A FLYWCH1 Missense_Mutation p.C276Y 0.53 deleterious(0) benign(0.001) TCGA-FP-7829-01 16 30505559 30505559 C T ITGAL Missense_Mutation p.R414W 0.34 deleterious(0) benign(0.004) TCGA-FP-7829-01 16 31230619 31230619 C T TRIM72 Missense_Mutation p.R166C 0.20 tolerated(0.08) possibly_damaging(0.513) TCGA-FP-7829-01 16 72828910 72828910 C A ZFHX3 Missense_Mutation p.Q2557H 0.25 unknown(0) TCGA-FP-7829-01 16 77331238 77331238 T G ADAMTS18 Missense_Mutation p.T917P 0.34 deleterious(0.02) possibly_damaging(0.522) TCGA-FP-7829-01 16 88706481 88706481 C T IL17C 3'UTR 0.50 TCGA-FP-7829-01 17 10265478 10265478 G T MYH13 Missense_Mutation p.H154Q 0.36 deleterious(0) probably_damaging(0.995) TCGA-FP-7829-01 17 10366655 10366655 A G MYH4 Missense_Mutation p.Y269H 0.33 deleterious(0.01) benign(0.274) TCGA-FP-7829-01 17 10426631 10426631 A C MYH2 Silent p.T1857T 0.38 TCGA-FP-7829-01 17 19318132 19318132 G A RNF112 Missense_Mutation p.R353Q 0.06 tolerated(0.38) benign(0.061) TCGA-FP-7829-01 17 3937348 3937348 G C ZZEF1 Missense_Mutation p.T2182S 0.41 deleterious(0.03) benign(0.169) TCGA-FP-7829-01 17 3954207 3954207 C T ZZEF1 Missense_Mutation p.A1911T 0.34 deleterious(0.05) benign(0.013) TCGA-FP-7829-01 17 51901904 51901904 C T KIF2B Missense_Mutation p.R504W 0.48 deleterious(0) probably_damaging(1) TCGA-FP-7829-01 17 5253802 5253802 C A RABEP1 Missense_Mutation p.Q281K 0.04 tolerated(0.08) benign(0.047) TCGA-FP-7829-01 17 559155 559155 G A VPS53 Silent p.H137H 0.19 TCGA-FP-7829-01 17 59949691 59949691 C T INTS2 Missense_Mutation p.V913I 0.29 tolerated(0.26) benign(0) TCGA-FP-7829-01 17 60518011 60518011 G T METTL2A Missense_Mutation p.A235S 0.27 deleterious(0.01) possibly_damaging(0.734) TCGA-FP-7829-01 17 65082948 65082948 T A HELZ Missense_Mutation p.I1831L 0.28 tolerated_low_confidence(1) unknown(0) TCGA-FP-7829-01 17 66423299 66423299 G T WIPI1 Missense_Mutation p.A390E 0.22 tolerated(0.56) benign(0.032) TCGA-FP-7829-01 17 70732815 70732815 C T SLC39A11 Silent p.T222T 0.52 TCGA-FP-7829-01 17 7554931 7554931 G A ATP1B2 Missense_Mutation p.R32H 0.50 deleterious(0) benign(0.136) TCGA-FP-7829-01 17 7578403 7578403 C A TP53 Missense_Mutation p.C176F 0.71 deleterious(0) probably_damaging(0.993) TCGA-FP-7829-01 17 8383470 8383470 G A MYH10 Missense_Mutation p.A1852V 0.19 possibly_damaging(0.507) TCGA-FP-7829-01 17 8814786 8814786 G A PIK3R5 Missense_Mutation p.T9M 0.36 deleterious(0) probably_damaging(1) TCGA-FP-7829-01 17 9764495 9764495 G A GLP2R Missense_Mutation p.R322H 0.41 deleterious(0) probably_damaging(0.996) TCGA-FP-7829-01 18 29037082 29037082 G T DSG3 Missense_Mutation p.A71S 0.25 deleterious(0) probably_damaging(1) TCGA-FP-7829-01 18 31709844 31709844 A G NOL4 Silent p.T135T 0.68 TCGA-FP-7829-01 18 34205579 34205579 C T FHOD3 Missense_Mutation p.R355W 0.68 deleterious(0) benign(0.401) TCGA-FP-7829-01 18 48591904 48591904 C T SMAD4 Missense_Mutation p.P356L 0.62 deleterious(0) probably_damaging(1) TCGA-FP-7829-01 18 56939701 56939701 C T RAX Silent p.T145T 0.46 TCGA-FP-7829-01 18 6046755 6046755 T C L3MBTL4 Splice_Site p.X482_splice 0.41 TCGA-FP-7829-01 18 77805864 77805864 G T RBFA Missense_Mutation p.Q247H 0.56 deleterious(0) probably_damaging(0.999) TCGA-FP-7829-01 19 10132297 10132297 G A RDH8 Missense_Mutation p.V290M 0.36 deleterious(0.05) benign(0.063) TCGA-FP-7829-01 19 14037367 14037368 - TCATC CC2D1A Frame_Shift_Ins p.V662Sfs*3 0.48 TCGA-FP-7829-01 19 16860348 16860348 C T NWD1 Missense_Mutation p.R299C 0.20 tolerated(0.13) benign(0.033) TCGA-FP-7829-01 19 1802601 1802601 G A ATP8B3 Silent p.F316F 0.41 TCGA-FP-7829-01 19 19261546 19261546 G A MEF2BNB-MEF2B 5'UTR 0.26 TCGA-FP-7829-01 19 19654586 19654586 A G CILP2 Missense_Mutation p.D411G 0.32 deleterious(0.01) benign(0.123) TCGA-FP-7829-01 19 20236018 20236018 C A CTC-260E6.2 RNA 0.70 TCGA-FP-7829-01 19 21608548 21608548 A G ZNF493 3'UTR 0.57 TCGA-FP-7829-01 19 21719370 21719370 C A ZNF429 Missense_Mutation p.P172H 0.56 tolerated(0.29) probably_damaging(0.986) TCGA-FP-7829-01 19 2515067 2515067 C T GNG7 Missense_Mutation p.A54T 0.24 tolerated(0.26) benign(0.007) TCGA-FP-7829-01 19 31039309 31039309 G - ZNF536 Frame_Shift_Del p.S928Ifs*3 0.20 TCGA-FP-7829-01 19 31769276 31769276 C T TSHZ3 Missense_Mutation p.D475N 0.48 tolerated(0.24) benign(0.046) TCGA-FP-7829-01 19 38160615 38160615 C T ZNF781 Silent p.T145T 0.26 TCGA-FP-7829-01 19 43349256 43349256 G C PSG10P RNA 0.52 TCGA-FP-7829-01 19 44244320 44244320 T A SMG9 Missense_Mutation p.N251I 0.52 deleterious(0.02) possibly_damaging(0.593) TCGA-FP-7829-01 19 46215975 46215975 C T FBXO46 Missense_Mutation p.R260H 0.19 deleterious(0.02) probably_damaging(0.923) TCGA-FP-7829-01 19 46287378 46287378 G A DMWD 3'UTR 0.32 TCGA-FP-7829-01 19 48636295 48636295 G A LIG1 Missense_Mutation p.R557C 0.27 deleterious(0) probably_damaging(0.998) TCGA-FP-7829-01 19 48994447 48994447 C A LMTK3 Silent p.P1457P 0.14 TCGA-FP-7829-01 19 49854564 49854564 G T TEAD2 Missense_Mutation p.L200I 0.21 tolerated(0.36) benign(0.056) TCGA-FP-7829-01 19 49936185 49936185 C T SLC17A7 Silent p.T300T 0.50 TCGA-FP-7829-01 19 50411805 50411806 GG - NUP62 Frame_Shift_Del p.T420Nfs*8 0.18 TCGA-FP-7829-01 19 51293690 51293690 T G ACPT Missense_Mutation p.W7G 0.46 tolerated_low_confidence(0.15) benign(0) TCGA-FP-7829-01 19 5131234 5131234 C T KDM4B Missense_Mutation p.P488L 0.75 benign(0.002) TCGA-FP-7829-01 19 52887920 52887920 C T ZNF880 Nonsense_Mutation p.R363* 0.47 TCGA-FP-7829-01 19 55316320 55316320 G A KIR2DL4 Missense_Mutation p.R50Q 0.42 tolerated(1) benign(0.01) TCGA-FP-7829-01 19 55349296 55349296 A G KIR2DS4 Silent p.S112S 0.52 TCGA-FP-7829-01 19 55750801 55750801 C T PPP6R1 Missense_Mutation p.E575K 0.12 tolerated(0.1) probably_damaging(0.997) TCGA-FP-7829-01 19 57066450 57066450 T A ZFP28 Missense_Mutation p.F766I 0.28 deleterious(0) probably_damaging(0.999) TCGA-FP-7829-01 19 58596724 58596724 G A ZSCAN18 Silent p.S343S 0.50 TCGA-FP-7829-01 19 6476976 6476976 C T DENND1C Silent p.R190R 0.15 TCGA-FP-7829-01 19 9015369 9015369 T A MUC16 Missense_Mutation p.K12740M 0.32 possibly_damaging(0.655) TCGA-FP-7829-01 19 9225581 9225581 G A OR7G1 Missense_Mutation p.P287S 0.22 deleterious(0.01) benign(0.139) TCGA-FP-7829-01 19 9407101 9407101 T G ZNF699 Silent p.R327R 0.52 TCGA-FP-7829-01 1 115168270 115168270 T G DENND2C Silent p.S112S 0.40 TCGA-FP-7829-01 1 14057566 14057566 G A PRDM2 Silent p.P27P 0.29 TCGA-FP-7829-01 1 145415460 145415460 C T HFE2 Silent p.T93T 0.44 TCGA-FP-7829-01 1 152282081 152282081 G A FLG Missense_Mutation p.R1761C 0.30 possibly_damaging(0.689) TCGA-FP-7829-01 1 155307502 155307502 C T ASH1L Silent p.R2948R 0.21 TCGA-FP-7829-01 1 156521536 156521536 G A IQGAP3 Silent p.Y565Y 0.58 TCGA-FP-7829-01 1 156593630 156593630 C T HAPLN2 Silent p.P39P 0.30 TCGA-FP-7829-01 1 156646946 156646946 G A NES Silent p.S37S 0.42 TCGA-FP-7829-01 1 157069094 157069094 G A ETV3L Silent p.I45I 0.54 TCGA-FP-7829-01 1 158517014 158517014 A C OR6Y1 Missense_Mutation p.I294M 0.22 deleterious(0) probably_damaging(0.999) TCGA-FP-7829-01 1 158687639 158687639 C A OR6K3 Missense_Mutation p.K89N 0.62 tolerated(0.16) benign(0.01) TCGA-FP-7829-01 1 167400933 167400933 G A CD247 Silent p.A160A 0.15 TCGA-FP-7829-01 1 17030454 17030454 G A ESPNP RNA 0.08 TCGA-FP-7829-01 1 175086196 175086196 C T TNN Silent p.D747D 0.44 TCGA-FP-7829-01 1 179019498 179019498 C T FAM20B Silent p.D154D 0.56 TCGA-FP-7829-01 1 197093437 197093437 G A ASPM Nonsense_Mutation p.Q1065* 0.29 TCGA-FP-7829-01 1 200956132 200956132 G T KIF21B Silent p.G1202G 0.29 TCGA-FP-7829-01 1 202318221 202318221 G T PPP1R12B Missense_Mutation p.G81V 0.26 deleterious(0) possibly_damaging(0.809) TCGA-FP-7829-01 1 212799147 212799147 G A FAM71A Missense_Mutation p.A310T 0.14 tolerated(1) benign(0) TCGA-FP-7829-01 1 22007310 22007312 CTT - USP48 In_Frame_Del p.E1025del 0.13 TCGA-FP-7829-01 1 223396725 223396725 G T SUSD4 Missense_Mutation p.S437Y 0.28 deleterious(0.01) possibly_damaging(0.851) TCGA-FP-7829-01 1 224804722 224804722 C A CNIH3 5'UTR 0.27 TCGA-FP-7829-01 1 238048755 238048755 G A ZP4 Nonsense_Mutation p.Q366* 0.25 TCGA-FP-7829-01 1 240256749 240256749 C T FMN2 Missense_Mutation p.P447L 0.20 unknown(0) TCGA-FP-7829-01 1 243385112 243385112 G A CEP170 Missense_Mutation p.R37C 0.33 deleterious(0) probably_damaging(0.996) TCGA-FP-7829-01 1 247695102 247695102 C A OR2C3 Missense_Mutation p.A238S 0.17 deleterious(0.01) possibly_damaging(0.887) TCGA-FP-7829-01 1 248551279 248551279 G A OR2T6 Missense_Mutation p.V124M 0.38 tolerated(0.1) benign(0.298) TCGA-FP-7829-01 1 248685675 248685675 C A OR2G6 Missense_Mutation p.S243Y 0.64 deleterious(0) probably_damaging(0.999) TCGA-FP-7829-01 1 25167282 25167282 C T CLIC4 Missense_Mutation p.R206C 0.38 tolerated(0.08) possibly_damaging(0.865) TCGA-FP-7829-01 1 28800582 28800582 A T PHACTR4 Missense_Mutation p.E457V 0.36 deleterious(0) probably_damaging(0.991) TCGA-FP-7829-01 1 29481422 29481422 C T SRSF4 Missense_Mutation p.D122N 0.58 deleterious(0.02) probably_damaging(0.954) TCGA-FP-7829-01 1 37291214 37291214 C A GRIK3 Missense_Mutation p.V582F 0.25 deleterious(0) probably_damaging(0.998) TCGA-FP-7829-01 1 38289411 38289411 G A MTF1 Missense_Mutation p.T381M 0.23 tolerated(0.07) benign(0.02) TCGA-FP-7829-01 1 43770806 43770806 C T TIE1 Missense_Mutation p.R115C 0.40 deleterious(0) possibly_damaging(0.621) TCGA-FP-7829-01 1 49224580 49224580 A C BEND5 Missense_Mutation p.L246R 0.61 deleterious(0.01) probably_damaging(0.994) TCGA-FP-7829-01 1 50610646 50610646 G T ELAVL4 Missense_Mutation p.E26D 0.25 tolerated_low_confidence(0.07) benign(0.076) TCGA-FP-7829-01 1 50642827 50642827 C G ELAVL4 Missense_Mutation p.T123S 0.44 tolerated(0.24) benign(0.021) TCGA-FP-7829-01 1 5925294 5925294 G T NPHP4 Silent p.V1228V 0.23 TCGA-FP-7829-01 1 62941002 62941002 T G DOCK7 Missense_Mutation p.E1963D 0.10 deleterious(0) probably_damaging(1) TCGA-FP-7829-01 1 75097440 75097440 C T C1orf173 Missense_Mutation p.R259H 0.16 tolerated(0.1) benign(0.296) TCGA-FP-7829-01 20 1456815 1456815 C T SIRPB2 Silent p.E342E 0.37 TCGA-FP-7829-01 20 1514929 1514929 C T SIRPD 3'UTR 0.50 TCGA-FP-7829-01 20 32336741 32336741 A G ZNF341 Missense_Mutation p.I118V 0.43 tolerated(0.07) benign(0.133) TCGA-FP-7829-01 20 34022548 34022548 T C GDF5 Missense_Mutation p.Y222C 0.18 deleterious(0) probably_damaging(0.98) TCGA-FP-7829-01 20 44519401 44519401 C T NEURL2 Nonsense_Mutation p.W77* 0.51 TCGA-FP-7829-01 20 44642407 44642407 G A MMP9 Silent p.R574R 0.33 TCGA-FP-7829-01 20 47602105 47602105 G A ARFGEF2 Missense_Mutation p.R744Q 0.17 deleterious(0) probably_damaging(1) TCGA-FP-7829-01 20 55033513 55033513 C T CASS4 Missense_Mutation p.H691Y 0.21 deleterious(0.03) benign(0.393) TCGA-FP-7829-01 20 62234354 62234354 C T GMEB2 Silent p.K107K 0.51 TCGA-FP-7829-01 21 31538438 31538438 G T CLDN17 Missense_Mutation p.F166L 0.71 deleterious(0) possibly_damaging(0.792) TCGA-FP-7829-01 21 34166251 34166251 C T C21orf62 Nonsense_Mutation p.W161* 0.23 TCGA-FP-7829-01 22 18389633 18389633 C T MICAL3 5'UTR 0.27 TCGA-FP-7829-01 22 23077398 23077398 C A IGLV2-18 Missense_Mutation p.Q59K 0.44 deleterious_low_confidence(0.03) benign(0.097) TCGA-FP-7829-01 22 40814951 40814951 G C MKL1 Silent p.L497L 0.26 TCGA-FP-7829-01 22 42189872 42189872 G A MEI1 Missense_Mutation p.E1129K 0.26 deleterious(0.01) probably_damaging(0.991) TCGA-FP-7829-01 22 45740434 45740434 C T SMC1B 3'UTR 0.42 TCGA-FP-7829-01 2 11300802 11300802 C T PQLC3 Missense_Mutation p.A93V 0.48 tolerated(0.07) benign(0.02) TCGA-FP-7829-01 2 120005614 120005614 C T STEAP3 Silent p.R294R 0.24 TCGA-FP-7829-01 2 1241788 1241788 A G SNTG2 Missense_Mutation p.N283S 0.29 tolerated(0.24) benign(0.004) TCGA-FP-7829-01 2 125521594 125521594 T A CNTNAP5 Silent p.S800S 0.46 TCGA-FP-7829-01 2 141072523 141072523 A G LRP1B Silent p.T4262T 0.44 TCGA-FP-7829-01 2 142888247 142888247 C A LRP1B Missense_Mutation p.A18S 0.13 unknown(0) TCGA-FP-7829-01 2 150064896 150064896 C T LYPD6B Nonsense_Mutation p.R100* 0.06 TCGA-FP-7829-01 2 163374466 163374466 G T KCNH7 Silent p.P222P 0.21 TCGA-FP-7829-01 2 189899659 189899659 G T COL5A2 Missense_Mutation p.L1446I 0.17 unknown(0) TCGA-FP-7829-01 2 198953756 198953756 C T PLCL1 Nonsense_Mutation p.Q964* 0.40 TCGA-FP-7829-01 2 202519634 202519634 G A MPP4 Missense_Mutation p.S436F 0.33 deleterious(0.02) probably_damaging(0.988) TCGA-FP-7829-01 2 207459514 207459514 G T ADAM23 Missense_Mutation p.G711V 0.22 deleterious(0) probably_damaging(1) TCGA-FP-7829-01 2 210560529 210560529 T C MAP2 Missense_Mutation p.I1212T 0.23 deleterious_low_confidence(0) benign(0.155) TCGA-FP-7829-01 2 220026747 220026747 C A SLC23A3 Missense_Mutation p.D581Y 0.20 deleterious(0.01) possibly_damaging(0.815) TCGA-FP-7829-01 2 234851437 234851437 A G TRPM8 Intron 0.45 TCGA-FP-7829-01 2 238234360 238234360 G T COL6A3 Nonsense_Mutation p.C3112* 0.24 TCGA-FP-7829-01 2 61275819 61275819 G T PEX13 Missense_Mutation p.A376S 0.14 tolerated(0.15) benign(0.176) TCGA-FP-7829-01 3 100976610 100976610 C T IMPG2 Missense_Mutation p.D306N 0.21 tolerated(0.08) possibly_damaging(0.511) TCGA-FP-7829-01 3 10276201 10276201 C T IRAK2 Missense_Mutation p.T444M 0.23 tolerated(0.12) benign(0.104) TCGA-FP-7829-01 3 118865646 118865646 C T C3orf30 Nonsense_Mutation p.R204* 0.20 TCGA-FP-7829-01 3 121178916 121178916 A G POLQ Missense_Mutation p.L2378P 0.27 deleterious(0.01) probably_damaging(0.99) TCGA-FP-7829-01 3 133465294 133465294 G A TF Missense_Mutation p.A4T 0.24 tolerated(0.4) possibly_damaging(0.499) TCGA-FP-7829-01 3 134090185 134090185 G A AMOTL2 Silent p.L31L 0.53 TCGA-FP-7829-01 3 14176343 14176343 T A TMEM43 Silent p.I219I 0.18 TCGA-FP-7829-01 3 1427425 1427425 A C CNTN6 Missense_Mutation p.N883T 0.63 deleterious(0.02) probably_damaging(1) TCGA-FP-7829-01 3 145790418 145790418 G C PLOD2 Missense_Mutation p.S593C 0.21 deleterious(0) probably_damaging(0.986) TCGA-FP-7829-01 3 150916462 150916462 G T GPR171 Missense_Mutation p.P238T 0.29 deleterious(0) probably_damaging(1) TCGA-FP-7829-01 3 167023731 167023731 A C ZBBX Silent p.T475T 0.26 TCGA-FP-7829-01 3 167039914 167039914 T G ZBBX Missense_Mutation p.K325T 0.23 deleterious(0) probably_damaging(1) TCGA-FP-7829-01 3 183882634 183882634 G A DVL3 Missense_Mutation p.G172S 0.26 tolerated(0.09) probably_damaging(0.982) TCGA-FP-7829-01 3 194790800 194790800 G A XXYLT1 Missense_Mutation p.R276W 0.35 deleterious(0.03) possibly_damaging(0.863) TCGA-FP-7829-01 3 384687 384687 A C CHL1 Missense_Mutation p.S234R 0.24 tolerated(0.13) benign(0.028) TCGA-FP-7829-01 3 44636719 44636719 T G ZNF660 3'UTR 0.79 TCGA-FP-7829-01 3 48916844 48916844 C T SLC25A20 Missense_Mutation p.V122I 0.37 tolerated(0.53) benign(0.074) TCGA-FP-7829-01 3 53218979 53218979 C A PRKCD Missense_Mutation p.Q293K 0.23 tolerated(0.67) probably_damaging(0.993) TCGA-FP-7829-01 3 8787374 8787374 G A CAV3 Missense_Mutation p.A93T 0.34 deleterious(0) probably_damaging(0.999) TCGA-FP-7829-01 4 119652578 119652578 G A SEC24D Silent p.L921L 0.43 TCGA-FP-7829-01 4 187628514 187628514 A T FAT1 Nonsense_Mutation p.L823* 0.43 TCGA-FP-7829-01 4 2062773 2062773 C T NAT8L Missense_Mutation p.P142L 0.85 tolerated(0.21) probably_damaging(0.998) TCGA-FP-7829-01 4 39448186 39448186 G A KLB Missense_Mutation p.A614T 0.52 tolerated(0.62) benign(0.003) TCGA-FP-7829-01 4 56736993 56736993 G A EXOC1 Silent p.Q251Q 0.36 TCGA-FP-7829-01 4 6064098 6064098 C T JAKMIP1 Missense_Mutation p.A501T 0.29 deleterious(0) probably_damaging(0.999) TCGA-FP-7829-01 4 68928501 68928501 C T TMPRSS11F Intron 0.16 TCGA-FP-7829-01 4 84350749 84350749 T A HELQ Missense_Mutation p.T816S 0.91 tolerated(0.57) benign(0.002) TCGA-FP-7829-01 5 128302292 128302292 A G SLC27A6 Silent p.R154R 0.83 TCGA-FP-7829-01 5 140182706 140182706 G A PCDHA3 Missense_Mutation p.A642T 0.53 tolerated_low_confidence(0.06) benign(0.16) TCGA-FP-7829-01 5 140588663 140588663 C T PCDHB12 Missense_Mutation p.R62W 0.43 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-FP-7829-01 5 140755048 140755048 C T PCDHGA6 Silent p.P466P 0.23 TCGA-FP-7829-01 5 140773250 140773250 G A PCDHGA8 Silent p.P290P 0.54 TCGA-FP-7829-01 5 150905451 150905452 - G FAT2 Frame_Shift_Ins p.Y3462Lfs*26 0.31 TCGA-FP-7829-01 5 15936756 15936756 G A FBXL7 Missense_Mutation p.D313N 0.72 deleterious(0.01) probably_damaging(0.999) TCGA-FP-7829-01 5 161324205 161324205 A C GABRA1 Missense_Mutation p.D383A 0.24 tolerated(0.15) possibly_damaging(0.463) TCGA-FP-7829-01 5 161981 161981 G A PLEKHG4B Silent p.L501L 0.65 TCGA-FP-7829-01 5 176638327 176638327 C A NSD1 Missense_Mutation p.A976D 0.19 deleterious_low_confidence(0) benign(0.043) TCGA-FP-7829-01 5 32090272 32090272 C A PDZD2 Missense_Mutation p.P2240T 0.17 tolerated(0.75) benign(0.282) TCGA-FP-7829-01 5 33751439 33751439 A G ADAMTS12 Intron 0.52 TCGA-FP-7829-01 5 3599588 3599588 A G IRX1 Missense_Mutation p.T176A 0.15 deleterious(0) probably_damaging(0.973) TCGA-FP-7829-01 5 38427162 38427162 C A EGFLAM Missense_Mutation p.A621E 0.17 tolerated(0.11) possibly_damaging(0.558) TCGA-FP-7829-01 5 43536983 43536983 G A PAIP1 Silent p.L304L 0.85 TCGA-FP-7829-01 5 86659260 86659260 A T RASA1 Nonsense_Mutation p.K517* 0.70 TCGA-FP-7829-01 6 107111010 107111010 G T QRSL1 Missense_Mutation p.R439I 0.34 deleterious(0.04) probably_damaging(0.926) TCGA-FP-7829-01 6 134210769 134210769 G T TCF21 Missense_Mutation p.Q78H 0.24 tolerated(0.07) benign(0.062) TCGA-FP-7829-01 6 134350098 134350099 - A SLC2A12 Frame_Shift_Ins p.V289Cfs*26 0.35 TCGA-FP-7829-01 6 146351157 146351157 C T GRM1 Silent p.A168A 0.26 TCGA-FP-7829-01 6 150005125 150005125 G A LATS1 Missense_Mutation p.T367I 0.28 tolerated_low_confidence(0.14) benign(0) TCGA-FP-7829-01 6 25819768 25819768 C T SLC17A1 Missense_Mutation p.R167Q 0.18 tolerated(0.11) benign(0.343) TCGA-FP-7829-01 6 29364435 29364435 C T OR12D2 5'UTR 0.53 TCGA-FP-7829-01 6 3078166 3078166 C T RIPK1 Silent p.A106A 0.25 TCGA-FP-7829-01 6 33041378 33041378 C A HLA-DPA1 5'UTR 0.43 TCGA-FP-7829-01 6 35262953 35262953 C A ZNF76 Silent p.I547I 0.25 TCGA-FP-7829-01 6 43543539 43543539 C T XPO5 Missense_Mutation p.M21I 0.23 deleterious(0.01) possibly_damaging(0.577) TCGA-FP-7829-01 6 63990178 63990178 G A LGSN Silent p.A426A 0.05 TCGA-FP-7829-01 6 66063353 66063353 G T EYS Missense_Mutation p.A486E 0.21 tolerated(0.78) benign(0) TCGA-FP-7829-01 6 74346391 74346391 C A SLC17A5 Missense_Mutation p.G218V 0.28 deleterious(0) probably_damaging(0.997) TCGA-FP-7829-01 7 114269988 114269988 G A FOXP2 Silent p.Q200Q 0.50 TCGA-FP-7829-01 7 121944205 121944205 C T FEZF1 Missense_Mutation p.R96Q 0.88 tolerated(0.35) probably_damaging(0.984) TCGA-FP-7829-01 7 126882944 126882944 C T GRM8 Silent p.T105T 0.48 TCGA-FP-7829-01 7 140706300 140706300 C T MRPS33 Missense_Mutation p.R84Q 0.68 deleterious(0.02) unknown(0) TCGA-FP-7829-01 7 150028250 150028250 C T ZBED6CL 3'UTR 0.70 TCGA-FP-7829-01 7 150703991 150703991 G A NOS3 Missense_Mutation p.R612H 0.78 deleterious(0) probably_damaging(0.998) TCGA-FP-7829-01 7 155530820 155530820 C T RBM33 Missense_Mutation p.P487L 0.73 deleterious_low_confidence(0.01) possibly_damaging(0.859) TCGA-FP-7829-01 7 19035693 19035693 A C HDAC9 3'Flank 0.29 TCGA-FP-7829-01 7 21598515 21598515 G A DNAH11 Silent p.K197K 0.21 TCGA-FP-7829-01 7 4900521 4900521 G T PAPOLB Silent p.P306P 0.14 TCGA-FP-7829-01 7 55223604 55223604 G A EGFR Missense_Mutation p.R324H 0.46 tolerated(0.06) benign(0.064) TCGA-FP-7829-01 7 66103848 66103848 T A KCTD7 Missense_Mutation p.L167M 0.31 deleterious(0.01) probably_damaging(0.921) TCGA-FP-7829-01 7 71036345 71036345 C A WBSCR17 Silent p.G346G 0.16 TCGA-FP-7829-01 7 72420625 72420625 C T POM121 3'UTR 0.23 TCGA-FP-7829-01 7 82543963 82543963 A C PCLO Intron 0.48 TCGA-FP-7829-01 7 89861667 89861667 T G STEAP2 Missense_Mutation p.V401G 0.45 deleterious(0) benign(0.392) TCGA-FP-7829-01 7 99757923 99757923 G T GAL3ST4 Missense_Mutation p.N363K 0.28 deleterious(0.01) probably_damaging(0.953) TCGA-FP-7829-01 8 10469956 10469956 C T RP1L1 Missense_Mutation p.R551Q 0.50 benign(0.003) TCGA-FP-7829-01 8 106813641 106813641 A C ZFPM2 Missense_Mutation p.K444T 0.70 deleterious(0.03) possibly_damaging(0.834) TCGA-FP-7829-01 8 116427108 116427108 G A TRPS1 Missense_Mutation p.P1010S 0.26 tolerated_low_confidence(0.76) benign(0.189) TCGA-FP-7829-01 8 125565369 125565369 T C MTSS1 Missense_Mutation p.Q711R 0.22 tolerated(0.48) benign(0.002) TCGA-FP-7829-01 8 141294065 141294065 C T TRAPPC9 Silent p.P777P 0.18 TCGA-FP-7829-01 8 143425409 143425410 GA - TSNARE1 Frame_Shift_Del p.L221Hfs*69 0.08 TCGA-FP-7829-01 8 145139196 145139196 G T GPAA1 Missense_Mutation p.C259F 0.19 deleterious(0) benign(0.173) TCGA-FP-7829-01 8 2054185 2054185 A T MYOM2 Missense_Mutation p.D963V 0.21 deleterious(0.03) probably_damaging(0.939) TCGA-FP-7829-01 8 22005847 22005847 C A LGI3 Missense_Mutation p.Q491H 0.52 tolerated(0.15) benign(0.002) TCGA-FP-7829-01 8 22414348 22414348 G A SORBS3 Missense_Mutation p.R114Q 0.15 tolerated(0.12) benign(0.041) TCGA-FP-7829-01 8 22864247 22864247 C A RHOBTB2 Silent p.I185I 0.12 TCGA-FP-7829-01 8 27516465 27516465 C T SCARA3 Missense_Mutation p.R260W 0.36 deleterious(0) probably_damaging(0.969) TCGA-FP-7829-01 8 3057273 3057273 G A CSMD1 Silent p.S1719S 0.33 TCGA-FP-7829-01 8 49832925 49832925 G T SNAI2 Missense_Mutation p.A52E 0.13 tolerated(0.29) benign(0.118) TCGA-FP-7829-01 8 67492545 67492545 A C MYBL1 Silent p.S308S 0.50 TCGA-FP-7829-01 8 70540421 70540421 G A SULF1 Silent p.E686E 0.27 TCGA-FP-7829-01 9 125437502 125437502 C A OR1L3 Missense_Mutation p.L32I 0.27 deleterious(0) possibly_damaging(0.559) TCGA-FP-7829-01 9 130940034 130940034 G A CIZ1 Silent p.G543G 0.50 TCGA-FP-7829-01 9 23692860 23692860 C T ELAVL2 Missense_Mutation p.G259R 0.42 tolerated(0.37) benign(0.084) TCGA-FP-7829-01 9 27949498 27949498 C T LINGO2 Missense_Mutation p.R391K 0.33 tolerated(1) benign(0) TCGA-FP-7829-01 9 40773269 40773269 T C ZNF658 Missense_Mutation p.Y669C 0.26 tolerated(0.16) possibly_damaging(0.873) TCGA-FP-7829-01 9 90266561 90266561 T A DAPK1 Missense_Mutation p.H582Q 0.26 deleterious(0) probably_damaging(0.996) TCGA-FP-7829-01 9 97333768 97333768 G A FBP2 Silent p.G181G 0.24 TCGA-FP-7829-01 X 101396191 101396191 G A TCEAL6 Missense_Mutation p.A38V 0.35 tolerated(0.41) benign(0.001) TCGA-FP-7829-01 X 101615448 101615448 C A NXF2B 3'UTR 0.50 TCGA-FP-7829-01 X 106069425 106069425 C T TBC1D8B Silent p.S331S 0.37 TCGA-FP-7829-01 X 107400416 107400416 G T COL4A6 Silent p.A1630A 0.31 TCGA-FP-7829-01 X 153524217 153524217 C T TKTL1 Missense_Mutation p.A2V 0.82 deleterious_low_confidence(0.03) unknown(0) TCGA-FP-7829-01 X 3229022 3229022 C A MXRA5 Missense_Mutation p.A2408S 0.42 deleterious(0.01) possibly_damaging(0.808) TCGA-FP-7829-01 X 56295828 56295828 T C KLF8 Missense_Mutation p.S222P 0.55 tolerated(0.07) possibly_damaging(0.757) TCGA-FP-7916-01 10 131760472 131760472 T A EBF3 Missense_Mutation p.D125V 0.06 deleterious(0) probably_damaging(0.999) TCGA-FP-7916-01 10 28420612 28420612 G C MPP7 Silent p.L108L 0.09 TCGA-FP-7916-01 10 33469182 33469182 C T NRP1 Missense_Mutation p.S865N 0.12 deleterious(0) probably_damaging(1) TCGA-FP-7916-01 11 123901046 123901046 C A OR10G8 Silent p.T239T 0.29 TCGA-FP-7916-01 11 31822268 31822268 C A PAX6 Missense_Mutation p.G179V 0.07 tolerated(0.09) benign(0.147) TCGA-FP-7916-01 11 46750282 46750282 G A F2 Missense_Mutation p.R456Q 0.25 deleterious(0.01) benign(0.415) TCGA-FP-7916-01 11 5528969 5528969 G T UBQLN3 Missense_Mutation p.P607H 0.10 deleterious(0.03) possibly_damaging(0.838) TCGA-FP-7916-01 11 56057668 56057668 G T OR8H1 Missense_Mutation p.L291I 0.11 deleterious(0.01) possibly_damaging(0.762) TCGA-FP-7916-01 11 61254513 61254513 C T PPP1R32 Missense_Mutation p.R310W 0.04 deleterious(0) probably_damaging(0.989) TCGA-FP-7916-01 11 63671514 63671514 C T MARK2 Missense_Mutation p.A524V 0.28 tolerated(0.22) benign(0.054) TCGA-FP-7916-01 11 65361001 65361001 G A KCNK7 Missense_Mutation p.R222C 0.08 deleterious(0.01) possibly_damaging(0.806) TCGA-FP-7916-01 11 7110411 7110411 C T RBMXL2 Silent p.D20D 0.25 TCGA-FP-7916-01 11 7334764 7334764 C T SYT9 Silent p.D212D 0.16 TCGA-FP-7916-01 11 77378083 77378083 G T RSF1 Missense_Mutation p.A1402E 0.19 deleterious_low_confidence(0) possibly_damaging(0.693) TCGA-FP-7916-01 12 40265616 40265616 G T SLC2A13 Silent p.T394T 0.18 TCGA-FP-7916-01 12 57351150 57351150 A G RDH16 Missense_Mutation p.F33L 0.13 tolerated(0.26) benign(0.152) TCGA-FP-7916-01 12 78400619 78400619 G T NAV3 Missense_Mutation p.G434V 0.28 tolerated(0.15) possibly_damaging(0.649) TCGA-FP-7916-01 12 91558423 91558423 C T DCN Missense_Mutation p.E95K 0.16 tolerated(0.09) possibly_damaging(0.563) TCGA-FP-7916-01 13 23914670 23914670 G A SACS Silent p.V1115V 0.15 TCGA-FP-7916-01 13 28143217 28143217 C T LNX2 Missense_Mutation p.E202K 0.15 tolerated(0.44) benign(0.097) TCGA-FP-7916-01 14 60976612 60976612 G A SIX6 Missense_Mutation p.G166R 0.19 deleterious(0) probably_damaging(0.995) TCGA-FP-7916-01 14 86089507 86089507 C T FLRT2 Missense_Mutation p.A550V 0.16 tolerated(0.08) possibly_damaging(0.762) TCGA-FP-7916-01 15 100332957 100332957 C A AC090825.1 3'Flank 0.11 TCGA-FP-7916-01 15 88476347 88476347 C A NTRK3 Silent p.L595L 0.10 TCGA-FP-7916-01 16 19191722 19191722 C A SYT17 Missense_Mutation p.S64R 0.12 deleterious_low_confidence(0.01) benign(0.021) TCGA-FP-7916-01 16 20043149 20043149 T C GPR139 Missense_Mutation p.S324G 0.05 tolerated_low_confidence(0.08) probably_damaging(0.952) TCGA-FP-7916-01 16 57608778 57608778 C T GPR114 Silent p.G420G 0.11 TCGA-FP-7916-01 16 58554928 58554928 C T CNOT1 Silent p.S2355S 0.12 TCGA-FP-7916-01 16 722946 722946 C A RHOT2 Missense_Mutation p.Q516K 0.08 tolerated(1) benign(0.01) TCGA-FP-7916-01 16 84005763 84005763 G A NECAB2 Missense_Mutation p.R70H 0.08 deleterious(0) possibly_damaging(0.904) TCGA-FP-7916-01 17 20108520 20108520 C T SPECC1 Silent p.S386S 0.08 TCGA-FP-7916-01 17 3552213 3552213 G A CTNS Silent p.E71E 0.17 TCGA-FP-7916-01 17 37607412 37607412 G C MED1 5'UTR 0.18 TCGA-FP-7916-01 17 41955298 41955298 G A MPP2 Silent p.Y512Y 0.13 TCGA-FP-7916-01 17 53798136 53798136 A - TMEM100 Frame_Shift_Del p.L99Yfs*2 0.27 TCGA-FP-7916-01 17 7735984 7735984 C T DNAH2 Missense_Mutation p.R4272W 0.17 possibly_damaging(0.893) TCGA-FP-7916-01 17 7762765 7762765 C A CYB5D1 Silent p.A174A 0.09 TCGA-FP-7916-01 19 20807836 20807836 T C ZNF626 Missense_Mutation p.K283E 0.20 deleterious(0) probably_damaging(0.967) TCGA-FP-7916-01 19 33355032 33355032 C T SLC7A9 Missense_Mutation p.V150I 0.06 tolerated(0.19) benign(0.182) TCGA-FP-7916-01 19 36616392 36616392 G A TBCB Missense_Mutation p.R196H 0.09 tolerated(0.08) benign(0.032) TCGA-FP-7916-01 19 39228953 39228953 G A CAPN12 Missense_Mutation p.R309C 0.06 deleterious(0) probably_damaging(0.976) TCGA-FP-7916-01 19 51021480 51021480 G A LRRC4B Missense_Mutation p.T497M 0.23 tolerated_low_confidence(0.06) benign(0.075) TCGA-FP-7916-01 19 51960994 51960994 C A SIGLEC8 Splice_Site p.X152_splice 0.12 TCGA-FP-7916-01 19 54255697 54255697 G T MIR519A1 RNA 0.17 TCGA-FP-7916-01 19 54301528 54301528 G T NLRP12 Missense_Mutation p.Q966K 0.12 tolerated(1) benign(0.016) TCGA-FP-7916-01 19 56160410 56160410 G A CCDC106 5'UTR 0.07 TCGA-FP-7916-01 19 58991757 58991757 C T ZNF446 Silent p.R339R 0.12 TCGA-FP-7916-01 1 112031538 112031538 C T ADORA3 Missense_Mutation p.R189Q 0.16 deleterious_low_confidence(0.03) benign(0.011) TCGA-FP-7916-01 1 120493400 120493400 G T NOTCH2 Missense_Mutation p.T809N 0.09 deleterious(0.03) possibly_damaging(0.88) TCGA-FP-7916-01 1 152188175 152188175 C T HRNR Missense_Mutation p.R1977H 0.04 unknown(0) TCGA-FP-7916-01 1 156756769 156756769 C T PRCC Missense_Mutation p.P296S 0.33 tolerated(0.16) benign(0.344) TCGA-FP-7916-01 1 159897636 159897636 T G IGSF9 Missense_Mutation p.E1091A 0.19 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-FP-7916-01 1 171310946 171310946 T C FMO4 Missense_Mutation p.S549P 0.24 tolerated(0.18) benign(0.006) TCGA-FP-7916-01 1 173176198 173176198 A G TNFSF4 Missense_Mutation p.F40L 0.07 tolerated(1) benign(0) TCGA-FP-7916-01 1 174210735 174210735 G C RABGAP1L Missense_Mutation p.E219D 0.12 tolerated(0.09) possibly_damaging(0.574) TCGA-FP-7916-01 1 190068073 190068073 C T BRINP3 Missense_Mutation p.R459H 0.26 deleterious(0.02) probably_damaging(0.996) TCGA-FP-7916-01 1 21071490 21071490 G A HP1BP3 Missense_Mutation p.R488W 0.08 deleterious_low_confidence(0.03) benign(0.001) TCGA-FP-7916-01 1 248344198 248344198 T A OR2M2 Missense_Mutation p.I304N 0.09 deleterious(0.04) benign(0.163) TCGA-FP-7916-01 1 27873798 27873798 C T AHDC1 3'UTR 0.28 TCGA-FP-7916-01 1 65255185 65255185 G A RAVER2 Missense_Mutation p.A365T 0.10 tolerated(0.07) benign(0.025) TCGA-FP-7916-01 20 48741552 48741552 G A TMEM189 Intron 0.27 TCGA-FP-7916-01 20 49620778 49620778 C G KCNG1 Missense_Mutation p.S447T 0.06 deleterious(0.04) possibly_damaging(0.906) TCGA-FP-7916-01 20 57766245 57766245 C T ZNF831 Silent p.A57A 0.13 TCGA-FP-7916-01 21 39671579 39671579 C A KCNJ15 Silent p.V132V 0.13 TCGA-FP-7916-01 21 43857605 43857605 G A UBASH3A Silent p.A467A 0.08 TCGA-FP-7916-01 21 46074169 46074169 C T KRTAP12-4 3'UTR 0.50 TCGA-FP-7916-01 22 17525849 17525849 C T CECR7 RNA 0.27 TCGA-FP-7916-01 22 38121801 38121801 A - TRIOBP Frame_Shift_Del p.T1080Pfs*133 0.13 TCGA-FP-7916-01 22 40057308 40057308 G A CACNA1I Missense_Mutation p.R965H 0.10 deleterious(0.04) possibly_damaging(0.522) TCGA-FP-7916-01 2 103130659 103130659 A G SLC9A4 Missense_Mutation p.E557G 0.14 tolerated(0.06) probably_damaging(0.948) TCGA-FP-7916-01 2 179417608 179417608 C G TTN Missense_Mutation p.V30007L 0.27 TCGA-FP-7916-01 2 179454471 179454471 G T TTN Missense_Mutation p.L20661M 0.08 TCGA-FP-7916-01 2 217559462 217559462 C T IGFBP5 Missense_Mutation p.A13T 0.27 tolerated(0.52) unknown(0) TCGA-FP-7916-01 2 220500552 220500552 C T SLC4A3 Silent p.A737A 0.24 TCGA-FP-7916-01 2 227953444 227953444 G T COL4A4 Missense_Mutation p.D516E 0.15 probably_damaging(0.918) TCGA-FP-7916-01 2 27804786 27804786 C T C2orf16 Missense_Mutation p.H1783Y 0.16 tolerated(0.7) possibly_damaging(0.606) TCGA-FP-7916-01 2 96944340 96944340 C T SNRNP200 Silent p.A1811A 0.09 TCGA-FP-7916-01 2 98853145 98853145 C A VWA3B Silent p.T875T 0.34 TCGA-FP-7916-01 3 1371510 1371510 T G CNTN6 Missense_Mutation p.S419A 0.23 tolerated(0.12) probably_damaging(0.959) TCGA-FP-7916-01 3 160143863 160143863 G A SMC4 Missense_Mutation p.R827H 0.14 tolerated(0.09) benign(0.001) TCGA-FP-7916-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.30 tolerated(0.11) possibly_damaging(0.529) TCGA-FP-7916-01 3 30686363 30686363 C T TGFBR2 Silent p.I98I 0.19 TCGA-FP-7916-01 3 49336032 49336032 C T USP4 Missense_Mutation p.D517N 0.14 deleterious(0) possibly_damaging(0.897) TCGA-FP-7916-01 3 8590452 8590452 G A LMCD1 Missense_Mutation p.V196M 0.21 deleterious(0.03) probably_damaging(0.989) TCGA-FP-7916-01 4 126398337 126398337 T A FAT4 Silent p.V4107V 0.13 TCGA-FP-7916-01 4 73962962 73962962 G C ANKRD17 Silent p.T1683T 0.09 TCGA-FP-7916-01 4 76882453 76882453 G A SDAD1 Missense_Mutation p.A397V 0.08 deleterious(0) benign(0.234) TCGA-FP-7916-01 5 136974737 136974737 G A KLHL3 Missense_Mutation p.T375M 0.14 tolerated(0.07) possibly_damaging(0.543) TCGA-FP-7916-01 5 140242332 140242332 G A AC005609.1 3'UTR 0.08 TCGA-FP-7916-01 5 140431196 140431196 C T PCDHB1 Silent p.N47N 0.26 TCGA-FP-7916-01 5 140739917 140739917 A C PCDHGB2 Missense_Mutation p.K72T 0.16 tolerated(0.23) possibly_damaging(0.457) TCGA-FP-7916-01 5 140741308 140741308 G A PCDHGB2 Missense_Mutation p.D536N 0.07 deleterious(0.01) possibly_damaging(0.84) TCGA-FP-7916-01 5 156734811 156734811 A T CYFIP2 Missense_Mutation p.N254Y 0.19 deleterious(0) possibly_damaging(0.853) TCGA-FP-7916-01 5 158267086 158267086 T G EBF1 Missense_Mutation p.Q196P 0.11 deleterious(0) probably_damaging(0.998) TCGA-FP-7916-01 5 176306891 176306891 C A UNC5A 3'UTR 0.29 TCGA-FP-7916-01 5 26915959 26915959 A T CDH9 Missense_Mutation p.F101Y 0.11 deleterious(0.03) probably_damaging(0.994) TCGA-FP-7916-01 6 102483398 102483398 C T GRIK2 Silent p.G756G 0.14 TCGA-FP-7916-01 6 146755497 146755497 G A GRM1 Silent p.A1050A 0.07 TCGA-FP-7916-01 6 160109172 160109172 C T SOD2 Missense_Mutation p.G110D 0.40 deleterious(0.04) probably_damaging(0.953) TCGA-FP-7916-01 6 163735873 163735873 G A PACRG Missense_Mutation p.G249S 0.51 tolerated(0.1) benign(0.234) TCGA-FP-7916-01 6 38890879 38890879 G A DNAH8 Missense_Mutation p.A3353T 0.33 probably_damaging(0.974) TCGA-FP-7916-01 6 39841029 39841029 A C DAAM2 Missense_Mutation p.K354Q 0.27 deleterious(0.03) probably_damaging(0.997) TCGA-FP-7916-01 6 56505390 56505390 G A DST Missense_Mutation p.R144C 0.14 probably_damaging(0.944) TCGA-FP-7916-01 6 7581033 7581033 G A DSP Missense_Mutation p.R1537H 0.36 possibly_damaging(0.684) TCGA-FP-7916-01 6 96651497 96651497 C G FUT9 Missense_Mutation p.L156V 0.26 tolerated(0.07) possibly_damaging(0.893) TCGA-FP-7916-01 7 100451897 100451898 - G SLC12A9 Frame_Shift_Ins p.P29Sfs*100 0.13 TCGA-FP-7916-01 7 150068855 150068855 G A REPIN1 Silent p.R232R 0.15 TCGA-FP-7916-01 7 151875049 151875049 G A KMT2C Missense_Mutation p.R2497C 0.24 probably_damaging(0.991) TCGA-FP-7916-01 7 27224786 27224786 C T HOXA11 5'UTR 0.09 TCGA-FP-7916-01 7 88964364 88964364 G A ZNF804B Missense_Mutation p.G690R 0.16 tolerated(0.09) benign(0.066) TCGA-FP-7916-01 8 133150173 133150173 C T KCNQ3 Silent p.G553G 0.12 TCGA-FP-7916-01 8 13357579 13357579 A G DLC1 Translation_Start_Site p.M1? 0.06 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-FP-7916-01 8 21938951 21938953 AAG - DMTN In_Frame_Del p.K401del 0.24 TCGA-FP-7916-01 8 36698093 36698093 G A KCNU1 Missense_Mutation p.R544Q 0.27 tolerated(0.06) possibly_damaging(0.56) TCGA-FP-7916-01 8 4851918 4851918 G C CSMD1 Missense_Mutation p.F7L 0.06 benign(0) TCGA-FP-7916-01 8 51617262 51617262 T G SNTG1 Missense_Mutation p.W381G 0.11 deleterious(0) probably_damaging(0.994) TCGA-FP-7916-01 8 57353809 57353809 G T PENK 3'UTR 0.06 TCGA-FP-7916-01 8 99961494 99961494 T A OSR2 Missense_Mutation p.V105D 0.17 tolerated(0.23) benign(0.056) TCGA-FP-7916-01 9 113538210 113538210 G A MUSK Missense_Mutation p.D443N 0.10 tolerated(0.15) benign(0.007) TCGA-FP-7916-01 9 116060314 116060314 G A RNF183 Missense_Mutation p.R51W 0.22 deleterious(0.01) possibly_damaging(0.606) TCGA-FP-7916-01 9 130479638 130479638 G C TTC16 Missense_Mutation p.E73Q 0.20 tolerated(0.09) possibly_damaging(0.734) TCGA-FP-7916-01 9 34552722 34552722 G A CNTFR Missense_Mutation p.T300M 0.19 deleterious(0.03) probably_damaging(0.996) TCGA-FP-7916-01 9 90501251 90501251 G A SPATA31E1 Missense_Mutation p.G617R 0.12 tolerated(0.11) possibly_damaging(0.837) TCGA-FP-7916-01 9 97563249 97563249 C T C9orf3 Silent p.I443I 0.14 TCGA-FP-7916-01 X 152159384 152159384 C T PNMA5 Silent p.P253P 0.10 TCGA-FP-7916-01 X 152713230 152713230 C T TREX2 5'UTR 0.18 TCGA-FP-7916-01 X 32360399 32360399 C A DMD Nonsense_Mutation p.E1914* 0.44 TCGA-FP-7916-01 X 50659159 50659159 G A BMP15 Missense_Mutation p.R244Q 0.15 tolerated(1) benign(0) TCGA-FP-7916-01 X 83411138 83411138 G T RPS6KA6 Missense_Mutation p.A68E 0.19 deleterious(0) possibly_damaging(0.905) TCGA-FP-7998-01 11 10777233 10777233 G A CTR9 Silent p.L131L 0.07 TCGA-FP-7998-01 11 1267649 1267649 C T MUC5B Missense_Mutation p.T3180M 0.09 unknown(0) TCGA-FP-7998-01 11 17415246 17415246 C T ABCC8 Missense_Mutation p.A1536T 0.06 tolerated(0.1) benign(0.387) TCGA-FP-7998-01 11 71952253 71952253 C T PHOX2A Missense_Mutation p.A100T 0.07 deleterious(0.01) benign(0.178) TCGA-FP-7998-01 12 11420936 11420936 G A PRB3 Missense_Mutation p.P83S 0.07 tolerated(0.09) unknown(0) TCGA-FP-7998-01 12 120190007 120190007 G C CIT Missense_Mutation p.L918V 0.12 tolerated(0.71) benign(0.007) TCGA-FP-7998-01 12 53722327 53722327 C T SP7 Missense_Mutation p.G300D 0.09 deleterious(0) possibly_damaging(0.727) TCGA-FP-7998-01 12 56231058 56231058 G T MMP19 Nonsense_Mutation p.S430* 0.14 TCGA-FP-7998-01 12 56397880 56397880 G T SUOX Missense_Mutation p.G236V 0.24 tolerated(0.12) possibly_damaging(0.686) TCGA-FP-7998-01 12 675332 675332 C T NINJ2 Missense_Mutation p.D62N 0.20 tolerated(1) benign(0.002) TCGA-FP-7998-01 12 81111120 81111120 G A MYF5 Missense_Mutation p.R93Q 0.07 deleterious(0) probably_damaging(0.999) TCGA-FP-7998-01 12 99020374 99020374 C T IKBIP Silent p.T156T 0.11 TCGA-FP-7998-01 13 28903858 28903858 G T FLT1 Silent p.A867A 0.18 TCGA-FP-7998-01 13 39262281 39262281 G A FREM2 Missense_Mutation p.R267H 0.04 deleterious(0.02) benign(0.007) TCGA-FP-7998-01 13 45517811 45517811 T A NUFIP1 Splice_Site p.X380_splice 0.13 TCGA-FP-7998-01 13 70549922 70549922 G T KLHL1 Silent p.T170T 0.08 TCGA-FP-7998-01 14 105413048 105413048 G A AHNAK2 Missense_Mutation p.P2914S 0.15 benign(0.208) TCGA-FP-7998-01 14 24424379 24424379 C A DHRS4 Nonsense_Mutation p.C88* 0.07 TCGA-FP-7998-01 14 44973958 44973958 G T FSCB Missense_Mutation p.Q745K 0.09 tolerated(0.45) unknown(0) TCGA-FP-7998-01 14 47120763 47120763 C A RPL10L Missense_Mutation p.Q59H 0.08 deleterious(0.04) possibly_damaging(0.836) TCGA-FP-7998-01 14 99723808 99723808 C A BCL11B Missense_Mutation p.G143W 0.09 deleterious(0) possibly_damaging(0.612) TCGA-FP-7998-01 16 30594148 30594148 G A ZNF785 Silent p.C317C 0.06 TCGA-FP-7998-01 16 49669967 49669967 C T ZNF423 Silent p.T1032T 0.15 TCGA-FP-7998-01 16 57503165 57503165 C T POLR2C Missense_Mutation p.T116M 0.04 deleterious(0.04) probably_damaging(0.997) TCGA-FP-7998-01 16 58550528 58550528 G A SETD6 Missense_Mutation p.R208H 0.12 tolerated(1) benign(0.002) TCGA-FP-7998-01 16 66948198 66948198 A G CDH16 Missense_Mutation p.I234T 0.20 tolerated(0.38) benign(0.155) TCGA-FP-7998-01 17 1635975 1635975 C T WDR81 Missense_Mutation p.P1447S 0.11 tolerated(1) benign(0.001) TCGA-FP-7998-01 17 34958746 34958746 C T MRM1 Silent p.L169L 0.16 TCGA-FP-7998-01 17 40140786 40140786 A G DNAJC7 Silent p.A294A 0.25 TCGA-FP-7998-01 17 4805383 4805383 C G CHRNE Splice_Site p.X115_splice 0.13 TCGA-FP-7998-01 17 49346248 49346248 G A UTP18 Missense_Mutation p.R202Q 0.11 tolerated(0.21) benign(0.003) TCGA-FP-7998-01 17 5442796 5442796 C T NLRP1 Missense_Mutation p.V937I 0.20 tolerated(0.4) benign(0.067) TCGA-FP-7998-01 18 63477064 63477064 G A CDH7 Missense_Mutation p.R112H 0.15 deleterious(0) probably_damaging(0.998) TCGA-FP-7998-01 19 46095136 46095136 C T GPR4 5'UTR 0.16 TCGA-FP-7998-01 19 48908092 48908092 C T GRIN2D Silent p.A189A 0.08 TCGA-FP-7998-01 19 7593841 7593841 C T MCOLN1 Silent p.I373I 0.09 TCGA-FP-7998-01 1 110737326 110737326 C T SLC6A17 Silent p.I475I 0.07 TCGA-FP-7998-01 1 154316667 154316667 G C ATP8B2 Missense_Mutation p.E691Q 0.11 tolerated(0.17) probably_damaging(0.995) TCGA-FP-7998-01 1 160252825 160252825 C T PEX19 Silent p.A85A 0.10 TCGA-FP-7998-01 1 180240812 180240812 G A LHX4 Intron 0.30 TCGA-FP-7998-01 1 186157143 186157143 T C HMCN1 Splice_Site p.X5514_splice 0.03 TCGA-FP-7998-01 1 19454159 19454159 G A UBR4 Silent p.F3062F 0.07 TCGA-FP-7998-01 1 225152313 225152313 T C DNAH14 Splice_Site p.X166_splice 0.13 TCGA-FP-7998-01 1 236914816 236914816 C T ACTN2 Missense_Mutation p.A568V 0.11 deleterious(0.04) benign(0.152) TCGA-FP-7998-01 1 241695679 241695679 A T KMO 5'UTR 0.20 TCGA-FP-7998-01 1 27101252 27101252 C T ARID1A Nonsense_Mutation p.Q1512* 0.23 TCGA-FP-7998-01 1 29475721 29475721 C T SRSF4 Missense_Mutation p.R229Q 0.08 tolerated(0.05) benign(0.238) TCGA-FP-7998-01 1 36023804 36023804 G A NCDN Missense_Mutation p.D5N 0.13 deleterious_low_confidence(0) possibly_damaging(0.539) TCGA-FP-7998-01 1 40131295 40131295 G A NT5C1A Missense_Mutation p.R111W 0.08 deleterious(0) probably_damaging(0.995) TCGA-FP-7998-01 20 17475310 17475310 C A BFSP1 Silent p.R469R 0.22 TCGA-FP-7998-01 20 43530312 43530312 C T YWHAB Silent p.L46L 0.08 TCGA-FP-7998-01 22 19222200 19222200 G T CLTCL1 Missense_Mutation p.N333K 0.04 tolerated(0.38) benign(0.053) TCGA-FP-7998-01 22 26222459 26222459 A T MYO18B Missense_Mutation p.I927F 0.15 deleterious(0) probably_damaging(0.976) TCGA-FP-7998-01 3 124174132 124174132 C G KALRN Missense_Mutation p.H1219D 0.06 deleterious(0) benign(0.236) TCGA-FP-7998-01 3 165548173 165548173 G C BCHE Missense_Mutation p.P217A 0.08 deleterious(0.02) benign(0.439) TCGA-FP-7998-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.21 deleterious(0.04) probably_damaging(0.96) TCGA-FP-7998-01 3 3887403 3887403 C T LRRN1 Missense_Mutation p.L360F 0.14 tolerated(0.06) possibly_damaging(0.701) TCGA-FP-7998-01 3 47610613 47610613 G A CSPG5 Missense_Mutation p.T496I 0.24 tolerated_low_confidence(0.27) benign(0.001) TCGA-FP-7998-01 4 102117123 102117123 G C PPP3CA Nonsense_Mutation p.S70* 0.09 TCGA-FP-7998-01 4 138451632 138451632 T G PCDH18 Missense_Mutation p.E537D 0.20 tolerated(0.61) benign(0.028) TCGA-FP-7998-01 4 162307248 162307248 T C FSTL5 Missense_Mutation p.D732G 0.10 deleterious(0.01) benign(0.046) TCGA-FP-7998-01 5 132227941 132227941 G A AFF4 Missense_Mutation p.T851M 0.12 tolerated(0.11) benign(0.009) TCGA-FP-7998-01 5 21751951 21751951 T G CDH12 Missense_Mutation p.E760D 0.07 tolerated(1) benign(0.043) TCGA-FP-7998-01 5 88047821 88047821 G T MEF2C Missense_Mutation p.P166T 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-FP-7998-01 6 163836228 163836228 G A QKI Translation_Start_Site p.M1? 0.17 deleterious_low_confidence(0.02) benign(0.014) TCGA-FP-7998-01 6 165808679 165808679 C T PDE10A Missense_Mutation p.G499E 0.31 deleterious(0.01) probably_damaging(0.968) TCGA-FP-7998-01 6 22294695 22294695 G A PRL Silent p.R49R 0.15 TCGA-FP-7998-01 6 50682949 50682949 G A TFAP2D Missense_Mutation p.E54K 0.10 tolerated(0.18) benign(0.003) TCGA-FP-7998-01 6 70637880 70637880 C T COL19A1 Missense_Mutation p.R116W 0.27 deleterious(0) unknown(0) TCGA-FP-7998-01 7 55750350 55750350 C T RNU6-389P 5'Flank 0.10 TCGA-FP-7998-01 7 88963200 88963200 A C ZNF804B Missense_Mutation p.I302L 0.15 tolerated(0.23) benign(0.012) TCGA-FP-7998-01 7 97821450 97821450 A G LMTK2 Missense_Mutation p.K558R 0.11 tolerated(0.05) probably_damaging(0.969) TCGA-FP-7998-01 8 145947781 145947781 C G ZNF251 Missense_Mutation p.E422Q 0.05 tolerated(1) benign(0.406) TCGA-FP-7998-01 8 41550270 41550270 G A ANK1 Nonsense_Mutation p.R1293* 0.06 TCGA-FP-7998-01 9 128092357 128092357 G A GAPVD1 Missense_Mutation p.G678D 0.10 tolerated(0.56) probably_damaging(0.917) TCGA-FP-7998-01 9 139113777 139113777 T A QSOX2 Missense_Mutation p.D229V 0.13 deleterious(0) probably_damaging(0.997) TCGA-FP-7998-01 9 8485824 8485824 G A PTPRD Missense_Mutation p.T998M 0.17 deleterious(0) probably_damaging(0.998) TCGA-FP-7998-01 9 90534162 90534163 - TCTTGTCTCCCAGCGTCA SPATA31C1 Intron 0.09 TCGA-FP-7998-01 X 107977194 107977194 C A IRS4 Missense_Mutation p.R794I 0.12 tolerated(0.24) unknown(0) TCGA-FP-7998-01 X 134992203 134992203 C A SAGE1 Missense_Mutation p.H580N 0.35 deleterious(0.03) possibly_damaging(0.888) TCGA-FP-7998-01 X 63412939 63412939 T C AMER1 Silent p.G76G 0.06 TCGA-FP-7998-01 X 88008872 88008872 C A CPXCR1 Missense_Mutation p.L153I 0.28 tolerated(0.22) possibly_damaging(0.801) TCGA-FP-8099-01 10 101292841 101292841 C T NKX2-3 5'UTR 0.09 TCGA-FP-8099-01 10 103550838 103550838 C T MGEA5 Missense_Mutation p.G757R 0.08 deleterious(0) benign(0.148) TCGA-FP-8099-01 10 108923946 108923946 C T SORCS1 Silent p.A113A 0.15 TCGA-FP-8099-01 10 115609996 115609996 C T DCLRE1A Missense_Mutation p.E290K 0.06 tolerated(0.41) benign(0.037) TCGA-FP-8099-01 10 118320019 118320019 G A PNLIP Silent p.K384K 0.48 TCGA-FP-8099-01 10 131334524 131334524 A G MGMT Missense_Mutation p.K34R 0.08 tolerated(0.1) benign(0.186) TCGA-FP-8099-01 10 134742984 134742984 C T TTC40 Intron 0.38 TCGA-FP-8099-01 10 15628600 15628600 C T ITGA8 Silent p.A785A 0.34 TCGA-FP-8099-01 10 27702628 27702628 G A PTCHD3 Silent p.F184F 0.43 TCGA-FP-8099-01 10 31139181 31139181 C T ZNF438 Silent p.L51L 0.30 TCGA-FP-8099-01 10 32150542 32150542 A G ARHGAP12 Silent p.Y243Y 0.17 TCGA-FP-8099-01 10 43287160 43287160 T G BMS1 Missense_Mutation p.V241G 0.21 deleterious(0) probably_damaging(0.999) TCGA-FP-8099-01 10 43596039 43596039 G A RET Missense_Mutation p.G69D 0.13 tolerated_low_confidence(0.11) possibly_damaging(0.747) TCGA-FP-8099-01 10 69672419 69672419 C T SIRT1 Nonsense_Mutation p.R516* 0.12 TCGA-FP-8099-01 10 91143907 91143907 G A IFIT1B Silent p.E279E 0.06 TCGA-FP-8099-01 11 117299086 117299086 C T DSCAML1 Silent p.K2100K 0.45 TCGA-FP-8099-01 11 12229626 12229626 A T MICAL2 Missense_Mutation p.I177F 0.40 tolerated(0.22) possibly_damaging(0.685) TCGA-FP-8099-01 11 125514068 125514068 G A CHEK1 Missense_Mutation p.D336N 0.07 tolerated(0.46) benign(0.002) TCGA-FP-8099-01 11 30032457 30032457 G A KCNA4 Missense_Mutation p.P590L 0.20 deleterious(0.01) probably_damaging(0.991) TCGA-FP-8099-01 11 48346854 48346854 G A OR4C3 Missense_Mutation p.C121Y 0.13 deleterious(0) benign(0.001) TCGA-FP-8099-01 11 51515370 51515370 T G OR4C46 Missense_Mutation p.F30C 0.40 deleterious_low_confidence(0) possibly_damaging(0.469) TCGA-FP-8099-01 11 55371644 55371644 G A OR4C11 Missense_Mutation p.S69F 0.29 tolerated(0.08) benign(0.003) TCGA-FP-8099-01 12 10603730 10603730 G A KLRC1 Missense_Mutation p.S9L 0.12 deleterious(0) probably_damaging(0.959) TCGA-FP-8099-01 12 132329865 132329865 C T MMP17 Missense_Mutation p.R359W 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-FP-8099-01 12 51882580 51882580 T G SLC4A8 Missense_Mutation p.I795S 0.13 deleterious(0.01) probably_damaging(0.998) TCGA-FP-8099-01 12 53776035 53776035 C T SP1 Nonsense_Mutation p.Q102* 0.43 TCGA-FP-8099-01 12 54109688 54109688 G A CALCOCO1 Silent p.S383S 0.20 TCGA-FP-8099-01 12 55420273 55420273 C T NEUROD4 Missense_Mutation p.T17I 0.43 tolerated(0.07) benign(0.001) TCGA-FP-8099-01 12 56234970 56234970 G C MMP19 Missense_Mutation p.A75G 0.12 deleterious(0.04) benign(0.026) TCGA-FP-8099-01 12 9254201 9254201 G T A2M Missense_Mutation p.H446N 0.19 deleterious(0.05) benign(0.434) TCGA-FP-8099-01 12 95926835 95926835 C A USP44 Missense_Mutation p.V400F 0.52 deleterious(0) probably_damaging(0.988) TCGA-FP-8099-01 13 24380153 24380153 G A MIPEP Missense_Mutation p.S595L 0.29 deleterious(0) probably_damaging(0.959) TCGA-FP-8099-01 13 53298181 53298181 C T LECT1 Missense_Mutation p.R140H 0.18 tolerated(0.67) benign(0.013) TCGA-FP-8099-01 13 77754282 77754282 C T MYCBP2 Missense_Mutation p.A1667T 0.44 benign(0.141) TCGA-FP-8099-01 14 105174317 105174317 G A INF2 Silent p.K571K 0.30 TCGA-FP-8099-01 14 105836184 105836184 A T PACS2 Missense_Mutation p.N250Y 0.53 deleterious(0.03) probably_damaging(1) TCGA-FP-8099-01 14 36987207 36987207 G A NKX2-1 Missense_Mutation p.P161L 0.13 deleterious(0) possibly_damaging(0.736) TCGA-FP-8099-01 14 63417125 63417125 G A KCNH5 Silent p.C365C 0.10 TCGA-FP-8099-01 14 78174460 78174460 G T SLIRP Silent p.A2A 0.27 TCGA-FP-8099-01 15 20496610 20496610 G A CHEK2P2 RNA 0.05 TCGA-FP-8099-01 15 20588661 20588661 C A HERC2P3 RNA 0.10 TCGA-FP-8099-01 15 31293981 31293981 G A TRPM1 3'UTR 0.31 TCGA-FP-8099-01 15 40656717 40656717 G T DISP2 Missense_Mutation p.R192L 0.08 tolerated(0.23) benign(0.109) TCGA-FP-8099-01 15 40661395 40661395 C A DISP2 Missense_Mutation p.L1028I 0.13 deleterious(0) probably_damaging(0.999) TCGA-FP-8099-01 15 42438358 42438358 C T PLA2G4F Missense_Mutation p.V501I 0.25 deleterious(0.03) possibly_damaging(0.844) TCGA-FP-8099-01 15 42652295 42652295 G A CAPN3 Missense_Mutation p.V98I 0.34 tolerated(0.37) benign(0.008) TCGA-FP-8099-01 15 54306827 54306827 G T UNC13C Missense_Mutation p.S576I 0.42 deleterious_low_confidence(0) possibly_damaging(0.736) TCGA-FP-8099-01 15 83932806 83932806 T C BNC1 Silent p.L399L 0.47 TCGA-FP-8099-01 15 88420326 88420326 C T NTRK3 Missense_Mutation p.R787H 0.24 deleterious(0.01) probably_damaging(0.996) TCGA-FP-8099-01 16 2290000 2290000 G A ECI1 Missense_Mutation p.L297F 0.50 deleterious(0) probably_damaging(0.982) TCGA-FP-8099-01 16 3254578 3254578 A G OR1F1 Missense_Mutation p.D111G 0.11 deleterious(0) possibly_damaging(0.78) TCGA-FP-8099-01 16 72821612 72821612 G A ZFHX3 Silent p.G3521G 0.30 TCGA-FP-8099-01 16 81925130 81925130 C T PLCG2 Silent p.D307D 0.34 TCGA-FP-8099-01 16 84203642 84203642 C A DNAAF1 Missense_Mutation p.A403D 0.13 tolerated(0.57) benign(0.075) TCGA-FP-8099-01 17 20799061 20799061 G A CCDC144NL Silent p.G91G 0.63 TCGA-FP-8099-01 17 2279113 2279113 G C SGSM2 Missense_Mutation p.A810P 0.46 tolerated(0.24) benign(0) TCGA-FP-8099-01 17 26919760 26919760 C T SPAG5 Missense_Mutation p.D168N 0.30 deleterious_low_confidence(0.03) possibly_damaging(0.903) TCGA-FP-8099-01 17 62019209 62019209 G A SCN4A Missense_Mutation p.S1478L 0.27 deleterious(0) probably_damaging(1) TCGA-FP-8099-01 17 72233438 72233438 C T TTYH2 Silent p.S140S 0.21 TCGA-FP-8099-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.52 tolerated(0.11) benign(0.308) TCGA-FP-8099-01 18 3188832 3188832 C T MYOM1 Missense_Mutation p.A229T 0.27 tolerated_low_confidence(1) benign(0) TCGA-FP-8099-01 18 42531860 42531860 C T SETBP1 Missense_Mutation p.T852M 0.19 deleterious(0) probably_damaging(0.999) TCGA-FP-8099-01 18 7017315 7017315 T C LAMA1 Missense_Mutation p.K924E 0.08 deleterious(0) possibly_damaging(0.72) TCGA-FP-8099-01 19 11134252 11134252 G A SMARCA4 Missense_Mutation p.R973Q 0.85 probably_damaging(0.992) TCGA-FP-8099-01 19 11493770 11493770 C T EPOR Intron 0.12 TCGA-FP-8099-01 19 14862365 14862365 T C EMR2 Missense_Mutation p.Y636C 0.53 deleterious(0.01) possibly_damaging(0.881) TCGA-FP-8099-01 19 18179266 18179266 G C IL12RB1 Silent p.A420A 0.07 TCGA-FP-8099-01 19 22847938 22847938 C T ZNF492 Silent p.S489S 0.67 TCGA-FP-8099-01 19 37903672 37903672 C T ZNF569 Missense_Mutation p.G630S 0.11 deleterious(0) probably_damaging(1) TCGA-FP-8099-01 19 41188680 41188680 G A NUMBL Silent p.L118L 0.37 TCGA-FP-8099-01 19 42270186 42270186 G A CEACAM6 3'UTR 0.46 TCGA-FP-8099-01 19 4510934 4510934 T G PLIN4 Missense_Mutation p.Q999P 0.13 deleterious(0) benign(0.127) TCGA-FP-8099-01 19 46388028 46388028 G T IRF2BP1 Silent p.T335T 0.24 TCGA-FP-8099-01 19 54803070 54803070 G A LILRA3 Missense_Mutation p.R203C 0.76 deleterious(0) benign(0.368) TCGA-FP-8099-01 1 100614640 100614640 G A LRRC39 3'UTR 0.10 TCGA-FP-8099-01 1 107867370 107867370 G A NTNG1 Missense_Mutation p.R238H 0.19 tolerated(0.63) benign(0.004) TCGA-FP-8099-01 1 118624180 118624180 C T SPAG17 Silent p.G616G 0.19 TCGA-FP-8099-01 1 147095750 147095750 C G BCL9 Missense_Mutation p.Q1091E 0.04 tolerated(0.12) benign(0.075) TCGA-FP-8099-01 1 158517100 158517100 G A OR6Y1 Missense_Mutation p.R266C 0.17 deleterious(0) benign(0.192) TCGA-FP-8099-01 1 181706750 181706750 C T CACNA1E Missense_Mutation p.A1171V 0.53 deleterious(0) possibly_damaging(0.835) TCGA-FP-8099-01 1 185270181 185270181 T C IVNS1ABP Missense_Mutation p.E348G 0.57 tolerated(0.28) benign(0.196) TCGA-FP-8099-01 1 232615460 232615460 C T SIPA1L2 Silent p.T666T 0.10 TCGA-FP-8099-01 1 245866043 245866043 G A KIF26B 3'UTR 0.30 TCGA-FP-8099-01 1 248685576 248685576 C T OR2G6 Missense_Mutation p.P210L 0.14 deleterious(0) possibly_damaging(0.841) TCGA-FP-8099-01 1 27099124 27099124 G A ARID1A Splice_Site p.X1180_splice 0.62 TCGA-FP-8099-01 1 60499178 60499178 G T C1orf87 Silent p.R333R 0.40 TCGA-FP-8099-01 20 23370597 23370597 C TT NAPB Frame_Shift_Ins p.E183Kfs*4 0.24 TCGA-FP-8099-01 20 30371652 30371652 G T TPX2 Missense_Mutation p.K447N 0.19 tolerated(0.06) benign(0.035) TCGA-FP-8099-01 20 37356300 37356300 C G SLC32A1 Missense_Mutation p.P199R 0.43 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-FP-8099-01 20 43837007 43837007 C T SEMG1 Nonsense_Mutation p.R357* 0.35 TCGA-FP-8099-01 20 54972832 54972832 G A CSTF1 Missense_Mutation p.D194N 0.06 deleterious(0.01) probably_damaging(0.934) TCGA-FP-8099-01 20 55108530 55108530 C T FAM209B Missense_Mutation p.R45W 0.17 tolerated(0.15) possibly_damaging(0.796) TCGA-FP-8099-01 20 57571768 57571768 C T CTSZ Missense_Mutation p.V243I 0.25 tolerated(1) benign(0.088) TCGA-FP-8099-01 20 57767395 57767395 G A ZNF831 Missense_Mutation p.D441N 0.52 deleterious(0) probably_damaging(0.999) TCGA-FP-8099-01 20 60485495 60485495 C T CDH4 Silent p.P402P 0.15 TCGA-FP-8099-01 20 60711931 60711944 TTTCTTCTTTTCGT - PSMA7 Frame_Shift_Del p.N239Tfs*? 0.09 TCGA-FP-8099-01 20 60714221 60714221 A G PSMA7 Silent p.F127F 0.41 TCGA-FP-8099-01 20 62493709 62493709 C T ABHD16B Silent p.F272F 0.43 TCGA-FP-8099-01 22 31495818 31495818 G A SMTN Missense_Mutation p.D847N 0.28 deleterious(0) probably_damaging(1) TCGA-FP-8099-01 2 105859311 105859311 C T GPR45 Silent p.R332R 0.44 TCGA-FP-8099-01 2 11750887 11750887 G A GREB1 Missense_Mutation p.V914I 0.39 tolerated(0.11) benign(0.339) TCGA-FP-8099-01 2 152521048 152521048 C T NEB Silent p.K1806K 0.60 TCGA-FP-8099-01 2 179472320 179472320 G A TTN Missense_Mutation p.R17699C 0.18 TCGA-FP-8099-01 2 179501304 179501304 G T TTN Missense_Mutation p.T13717K 0.20 TCGA-FP-8099-01 2 218700881 218700881 G A TNS1 Missense_Mutation p.R896W 0.17 deleterious(0) probably_damaging(0.993) TCGA-FP-8099-01 2 219558685 219558685 G A STK36 Missense_Mutation p.R772Q 0.42 tolerated(1) benign(0.004) TCGA-FP-8099-01 2 225669928 225669928 G A DOCK10 Missense_Mutation p.S1349L 0.17 deleterious(0) benign(0.273) TCGA-FP-8099-01 2 238259791 238259791 G A COL6A3 Silent p.T2266T 0.38 TCGA-FP-8099-01 2 26684574 26684574 G A OTOF Silent p.D1841D 0.68 TCGA-FP-8099-01 2 26702140 26702140 C T OTOF Missense_Mutation p.D736N 0.18 deleterious(0.02) benign(0.02) TCGA-FP-8099-01 2 26712138 26712138 C T OTOF Missense_Mutation p.R329H 0.68 tolerated(0.16) probably_damaging(0.952) TCGA-FP-8099-01 2 31595105 31595105 G A XDH Silent p.H615H 0.17 TCGA-FP-8099-01 2 47639634 47639634 C T MSH2 Missense_Mutation p.R243W 0.56 deleterious(0) probably_damaging(1) TCGA-FP-8099-01 2 80530432 80530432 G A LRRTM1 Silent p.N171N 0.33 TCGA-FP-8099-01 3 102196497 102196497 A C ZPLD1 3'UTR 0.57 TCGA-FP-8099-01 3 111432935 111432935 C T PLCXD2 Missense_Mutation p.R276W 0.42 deleterious(0.01) probably_damaging(0.937) TCGA-FP-8099-01 3 126261238 126261238 G A CHST13 Silent p.A281A 0.50 TCGA-FP-8099-01 3 140281655 140281655 G A CLSTN2 Missense_Mutation p.V739M 0.40 deleterious(0) possibly_damaging(0.459) TCGA-FP-8099-01 3 50224175 50224175 G A SEMA3F Missense_Mutation p.R648Q 0.15 tolerated(0.18) benign(0.158) TCGA-FP-8099-01 3 58064475 58064475 G A FLNB Silent p.P191P 0.39 TCGA-FP-8099-01 4 114254239 114254239 C T ANK2 Missense_Mutation p.A1085V 0.50 probably_damaging(0.999) TCGA-FP-8099-01 4 123252601 123252601 C T KIAA1109 Silent p.D3790D 0.24 TCGA-FP-8099-01 4 40752654 40752654 T A NSUN7 5'UTR 0.24 TCGA-FP-8099-01 4 74846847 74846847 C A PF4 3'UTR 0.41 TCGA-FP-8099-01 4 8401309 8401309 C T ACOX3 Missense_Mutation p.E283K 0.21 deleterious(0.03) benign(0.068) TCGA-FP-8099-01 4 93225854 93225854 G A GRID2 Missense_Mutation p.R16Q 0.23 tolerated_low_confidence(0.35) benign(0.001) TCGA-FP-8099-01 4 9783986 9783986 G A DRD5 Silent p.A111A 0.19 TCGA-FP-8099-01 5 118533640 118533640 C T DMXL1 Silent p.N2578N 0.13 TCGA-FP-8099-01 5 121488536 121488536 T C ZNF474 Missense_Mutation p.L284P 0.15 deleterious(0) probably_damaging(0.995) TCGA-FP-8099-01 5 134871035 134871035 G A NEUROG1 Missense_Mutation p.R116C 0.16 deleterious(0) probably_damaging(1) TCGA-FP-8099-01 5 140482078 140482078 C T PCDHB3 Silent p.F615F 0.06 TCGA-FP-8099-01 5 147856267 147856267 T A HTR4 3'Flank 0.48 TCGA-FP-8099-01 5 159776631 159776631 C A C1QTNF2 Missense_Mutation p.E179D 0.14 tolerated(0.66) unknown(0) TCGA-FP-8099-01 5 161495005 161495005 G A GABRG2 5'UTR 0.12 TCGA-FP-8099-01 5 3600242 3600242 G A IRX1 Missense_Mutation p.V394I 0.67 deleterious(0.03) benign(0.079) TCGA-FP-8099-01 5 55237554 55237554 G A IL6ST Missense_Mutation p.P705S 0.08 tolerated(0.86) benign(0.026) TCGA-FP-8099-01 5 82836187 82836187 C A VCAN Missense_Mutation p.S2455R 0.61 tolerated(0.15) benign(0.003) TCGA-FP-8099-01 5 82836404 82836404 G A VCAN Missense_Mutation p.E2528K 0.73 tolerated(0.1) benign(0.022) TCGA-FP-8099-01 6 13977379 13977379 C T RNF182 Missense_Mutation p.A10V 0.19 tolerated(0.33) benign(0.001) TCGA-FP-8099-01 6 146264757 146264757 C T SHPRH Missense_Mutation p.G587E 0.08 tolerated_low_confidence(1) benign(0.002) TCGA-FP-8099-01 6 152563500 152563500 G A SYNE1 Nonsense_Mutation p.Q6590* 0.20 TCGA-FP-8099-01 6 153043291 153043291 G A MYCT1 Missense_Mutation p.R204H 0.19 deleterious(0.02) probably_damaging(0.949) TCGA-FP-8099-01 6 159677562 159677562 G T FNDC1 Missense_Mutation p.L1691F 0.22 deleterious(0.01) probably_damaging(0.989) TCGA-FP-8099-01 6 26501921 26501921 G T BTN1A1 Missense_Mutation p.L61F 0.08 deleterious(0) possibly_damaging(0.599) TCGA-FP-8099-01 6 28543893 28543893 T C SCAND3 Missense_Mutation p.M197V 0.22 deleterious_low_confidence(0.05) possibly_damaging(0.553) TCGA-FP-8099-01 6 34004261 34004261 G A GRM4 Silent p.C542C 0.55 TCGA-FP-8099-01 6 43188941 43188941 G A CUL9 Missense_Mutation p.D2212N 0.04 deleterious(0) probably_damaging(0.99) TCGA-FP-8099-01 6 74475690 74475690 T C CD109 Missense_Mutation p.L382P 0.07 tolerated(0.28) benign(0.002) TCGA-FP-8099-01 7 103234184 103234184 C A RELN Missense_Mutation p.R1286L 0.05 deleterious(0.03) probably_damaging(0.996) TCGA-FP-8099-01 7 107334909 107334909 T C SLC26A4 Missense_Mutation p.L442P 0.47 deleterious(0) probably_damaging(1) TCGA-FP-8099-01 7 128494556 128494556 G A FLNC Missense_Mutation p.A2273T 0.50 tolerated(0.61) benign(0.01) TCGA-FP-8099-01 7 152550658 152550658 C T ACTR3B Missense_Mutation p.S386L 0.07 deleterious(0.03) possibly_damaging(0.826) TCGA-FP-8099-01 7 35131484 35131484 G T DPY19L2P1 RNA 0.15 TCGA-FP-8099-01 7 44425619 44425619 C T NUDCD3 Silent p.V359V 0.20 TCGA-FP-8099-01 7 72418975 72418975 G A POM121 Missense_Mutation p.G989E 0.11 tolerated_low_confidence(0.5) unknown(0) TCGA-FP-8099-01 7 80432050 80432050 A C SEMA3C Missense_Mutation p.F283V 0.23 deleterious(0) possibly_damaging(0.889) TCGA-FP-8099-01 8 102570941 102570941 C T GRHL2 Silent p.D193D 0.19 TCGA-FP-8099-01 8 131793086 131793086 G A ADCY8 Silent p.G1102G 0.22 TCGA-FP-8099-01 8 133882060 133882060 G A TG Missense_Mutation p.R88Q 0.16 tolerated(0.33) benign(0.256) TCGA-FP-8099-01 8 33353133 33353133 C T MAK16 Missense_Mutation p.T174M 0.24 tolerated(0.08) benign(0.378) TCGA-FP-8099-01 9 113171166 113171166 G A SVEP1 Silent p.V2238V 0.20 TCGA-FP-8099-01 9 113562732 113562732 C G MUSK Missense_Mutation p.P692A 0.10 tolerated(0.78) benign(0.129) TCGA-FP-8099-01 9 117051000 117051000 G A COL27A1 Missense_Mutation p.G1355R 0.53 unknown(0) TCGA-FP-8099-01 9 125154794 125154794 G A PTGS1 Missense_Mutation p.A591T 0.15 tolerated_low_confidence(0.65) benign(0.001) TCGA-FP-8099-01 9 130911736 130911736 G C LCN2 Intron 0.16 TCGA-FP-8099-01 9 137806261 137806261 G A FCN1 Nonsense_Mutation p.R93* 0.37 TCGA-FP-8099-01 9 21216966 21216967 - A IFNA16 Frame_Shift_Ins p.Q114Pfs*5 0.10 TCGA-FP-8099-01 9 21974697 21974697 A - CDKN2A Frame_Shift_Del p.Y44Tfs*9 0.29 TCGA-FP-8099-01 9 6015438 6015438 A G RANBP6 Missense_Mutation p.V57A 0.28 deleterious(0.04) benign(0.065) TCGA-FP-8099-01 9 841979 841979 C T DMRT1 Silent p.A47A 0.23 TCGA-FP-8099-01 9 84606817 84606817 G T SPATA31D1 Nonsense_Mutation p.E478* 0.08 TCGA-FP-8099-01 X 123020088 123020088 A G XIAP Silent p.T192T 0.07 TCGA-FP-8099-01 X 134294425 134294425 C A CT55 Missense_Mutation p.R112I 0.87 deleterious(0) possibly_damaging(0.641) TCGA-FP-8099-01 X 153072792 153072792 G A PDZD4 Missense_Mutation p.A110V 0.11 tolerated(0.06) benign(0.004) TCGA-FP-8099-01 X 26158023 26158023 G C MAGEB18 Missense_Mutation p.L307F 0.81 deleterious(0) probably_damaging(0.953) TCGA-FP-8099-01 X 54950962 54950962 C T TRO Nonsense_Mutation p.R439* 0.63 TCGA-FP-8099-01 X 72433043 72433043 T C NAP1L2 Missense_Mutation p.Y429C 0.60 deleterious_low_confidence(0) possibly_damaging(0.87) TCGA-FP-8209-01 19 18391902 18391902 G A JUND Silent p.S131S 0.19 TCGA-FP-8210-01 15 45564491 45564491 A G SLC28A2 Splice_Site p.X550_splice 0.12 TCGA-FP-8210-01 16 68844182 68844182 A G CDH1 Missense_Mutation p.D257G 0.11 deleterious(0) probably_damaging(1) TCGA-FP-8210-01 1 223943324 223943324 G A CAPN2 Missense_Mutation p.M426I 0.12 deleterious(0) probably_damaging(0.967) TCGA-FP-8210-01 2 235951626 235951626 C A SH3BP4 Nonsense_Mutation p.S738* 0.07 TCGA-FP-8210-01 5 159830390 159830390 T A SLU7 Missense_Mutation p.M555L 0.05 tolerated(0.78) benign(0) TCGA-FP-8211-01 10 50916559 50916559 G A C10orf53 Missense_Mutation p.G124R 0.32 deleterious_low_confidence(0) unknown(0) TCGA-FP-8211-01 10 73494045 73494045 T C CDH23 Missense_Mutation p.Y1390H 0.41 deleterious(0.03) probably_damaging(0.965) TCGA-FP-8211-01 10 89717665 89717666 - C PTEN Frame_Shift_Ins p.T232Hfs*11 0.30 TCGA-FP-8211-01 11 118963856 118963856 G A HMBS Missense_Mutation p.G317S 0.52 tolerated(0.09) possibly_damaging(0.571) TCGA-FP-8211-01 11 2415369 2415369 G C CD81 Missense_Mutation p.G76R 0.54 deleterious(0) probably_damaging(1) TCGA-FP-8211-01 11 2436698 2436698 A C TRPM5 Missense_Mutation p.C378G 0.70 tolerated(0.39) benign(0.001) TCGA-FP-8211-01 11 55136271 55136271 T G OR4A15 Silent p.T304T 0.08 TCGA-FP-8211-01 11 62416240 62416240 G C INTS5 Missense_Mutation p.L438V 0.39 tolerated(0.36) benign(0.36) TCGA-FP-8211-01 11 64875938 64875938 C G VPS51 Missense_Mutation p.A332G 0.24 tolerated(0.39) benign(0.062) TCGA-FP-8211-01 11 66026228 66026228 C G KLC2 Missense_Mutation p.Q55E 0.36 tolerated(1) benign(0.001) TCGA-FP-8211-01 11 67218848 67218848 C T GPR152 Missense_Mutation p.A450T 0.07 tolerated_low_confidence(0.14) unknown(0) TCGA-FP-8211-01 11 72554646 72554646 A T FCHSD2 Intron 0.39 TCGA-FP-8211-01 11 94129639 94129639 T G GPR83 Missense_Mutation p.S147R 0.28 deleterious(0) probably_damaging(0.995) TCGA-FP-8211-01 12 130927120 130927120 C T RIMBP2 Silent p.T242T 0.06 TCGA-FP-8211-01 12 3126584 3126584 G C TEAD4 Missense_Mutation p.K125N 0.38 deleterious(0.02) probably_damaging(0.98) TCGA-FP-8211-01 12 51685395 51685395 G T BIN2 Missense_Mutation p.P499T 0.38 deleterious_low_confidence(0) possibly_damaging(0.637) TCGA-FP-8211-01 12 51685396 51685396 G T BIN2 Silent p.S498S 0.39 TCGA-FP-8211-01 12 52779341 52779341 G T KRT84 Missense_Mutation p.S10Y 0.48 deleterious(0.01) possibly_damaging(0.502) TCGA-FP-8211-01 12 7649454 7649454 T C CD163 Missense_Mutation p.K352E 0.40 tolerated(0.46) possibly_damaging(0.852) TCGA-FP-8211-01 12 8082432 8082432 G C SLC2A3 Missense_Mutation p.Q237E 0.20 tolerated(0.84) benign(0.314) TCGA-FP-8211-01 12 88379779 88379779 T A C12orf50 Missense_Mutation p.K325I 0.45 deleterious(0.01) probably_damaging(0.971) TCGA-FP-8211-01 13 113887618 113887618 T C CUL4A Silent p.L214L 0.55 TCGA-FP-8211-01 13 35926334 35926334 A G NBEA Missense_Mutation p.E2018G 0.35 deleterious(0) possibly_damaging(0.904) TCGA-FP-8211-01 13 36229748 36229748 G C NBEA Missense_Mutation p.D2721H 0.25 deleterious(0.01) probably_damaging(0.996) TCGA-FP-8211-01 13 76055892 76055892 G A TBC1D4 Silent p.P4P 0.36 TCGA-FP-8211-01 14 101493150 101493150 C T MIR329-1 RNA 0.66 TCGA-FP-8211-01 14 44974327 44974327 C A FSCB Missense_Mutation p.V622F 0.15 tolerated(0.08) unknown(0) TCGA-FP-8211-01 14 51706955 51706955 C G TMX1 5'UTR 0.44 TCGA-FP-8211-01 14 79433613 79433613 G A NRXN3 Missense_Mutation p.R574H 0.54 tolerated(0.08) probably_damaging(0.951) TCGA-FP-8211-01 15 42159828 42159828 T G SPTBN5 Missense_Mutation p.T2074P 0.59 benign(0.052) TCGA-FP-8211-01 15 65209596 65209596 G T ANKDD1A Silent p.V50V 0.50 TCGA-FP-8211-01 15 65623827 65623827 A G IGDCC3 Missense_Mutation p.V440A 0.35 deleterious(0) possibly_damaging(0.829) TCGA-FP-8211-01 15 78927920 78927920 C T CHRNB4 Missense_Mutation p.R22H 0.18 tolerated(0.56) benign(0.346) TCGA-FP-8211-01 15 86838542 86838542 A G AGBL1 Silent p.Q713Q 0.13 TCGA-FP-8211-01 16 49670809 49670809 A G ZNF423 Missense_Mutation p.C752R 0.23 deleterious(0) probably_damaging(0.999) TCGA-FP-8211-01 16 69727070 69727070 A C NFAT5 Silent p.P1114P 0.39 TCGA-FP-8211-01 16 708999 708999 C A WDR90 Missense_Mutation p.A1000D 0.33 deleterious(0.01) benign(0.004) TCGA-FP-8211-01 17 18022229 18022229 G A MYO15A Missense_Mutation p.G39S 0.47 probably_damaging(0.996) TCGA-FP-8211-01 17 29509580 29509584 GTAAA TTTT NF1 Frame_Shift_Del p.R262Lfs*19 0.58 TCGA-FP-8211-01 17 3657208 3657208 C T ITGAE Missense_Mutation p.A466T 0.65 tolerated(0.18) probably_damaging(0.958) TCGA-FP-8211-01 17 41598738 41598738 A G DHX8 Missense_Mutation p.D1023G 0.30 tolerated(0.05) benign(0.217) TCGA-FP-8211-01 17 42268059 42268059 A T TMUB2 Missense_Mutation p.S265C 0.33 deleterious(0.05) possibly_damaging(0.711) TCGA-FP-8211-01 17 74714795 74714795 C T JMJD6 Intron 0.29 TCGA-FP-8211-01 17 74740462 74740462 T A MFSD11 Silent p.V185V 0.35 TCGA-FP-8211-01 18 25582961 25582961 T C CDH2 Silent p.E340E 0.14 TCGA-FP-8211-01 19 14629110 14629110 C T DNAJB1 Missense_Mutation p.E18K 0.29 deleterious(0.04) possibly_damaging(0.686) TCGA-FP-8211-01 19 19030124 19030124 C T COPE Missense_Mutation p.G12S 0.22 tolerated(0.33) unknown(0) TCGA-FP-8211-01 19 20117898 20117898 G C ZNF682 Nonsense_Mutation p.S138* 0.17 TCGA-FP-8211-01 19 30935410 30935410 A G ZNF536 Missense_Mutation p.E314G 0.16 deleterious(0.02) possibly_damaging(0.859) TCGA-FP-8211-01 19 39063921 39063921 G C RYR1 Missense_Mutation p.Q4701H 0.28 unknown(0) TCGA-FP-8211-01 19 799436 799436 G C PTBP1 Missense_Mutation p.G11A 0.27 deleterious(0.03) benign(0.021) TCGA-FP-8211-01 1 148016443 148016443 C A NBPF14 Missense_Mutation p.V273L 0.26 tolerated(0.31) probably_damaging(0.948) TCGA-FP-8211-01 1 151787828 151787828 C G RORC Missense_Mutation p.Q124H 0.19 deleterious(0.02) benign(0.059) TCGA-FP-8211-01 1 156351872 156351872 C A RHBG Nonsense_Mutation p.S331* 0.30 TCGA-FP-8211-01 1 159805026 159805026 C - SLAMF8 Frame_Shift_Del p.V281Cfs*140 0.16 TCGA-FP-8211-01 1 167839517 167839540 GGTACTCAATTTTCATAAGTATCT - ADCY10 In_Frame_Del p.Q524_Y531del 0.21 TCGA-FP-8211-01 1 168066053 168066053 G C GPR161 Missense_Mutation p.N284K 0.26 tolerated(0.17) benign(0.185) TCGA-FP-8211-01 1 17721556 17721556 G C PADI6 RNA 0.45 TCGA-FP-8211-01 1 201193974 201193974 T G IGFN1 Silent p.V3486V 0.11 TCGA-FP-8211-01 1 207933057 207933057 C T CD46 Missense_Mutation p.P155S 0.21 deleterious(0) probably_damaging(1) TCGA-FP-8211-01 1 235324635 235324655 CGGCAGTCGGCCGCCGGGCGG - RBM34 5'UTR 0.28 TCGA-FP-8211-01 1 37959615 37959615 C G MEAF6 3'UTR 0.32 TCGA-FP-8211-01 1 40366943 40366943 G A MYCL Missense_Mutation p.A85V 0.38 tolerated(0.47) benign(0.017) TCGA-FP-8211-01 1 60456237 60456237 C T C1orf87 3'UTR 0.42 TCGA-FP-8211-01 1 99470042 99470042 G C LPPR5 Silent p.A62A 0.40 TCGA-FP-8211-01 20 947920 947920 G T RSPO4 Missense_Mutation p.D102E 0.38 deleterious(0) probably_damaging(0.971) TCGA-FP-8211-01 21 22664463 22664463 T - NCAM2 Frame_Shift_Del p.L174Pfs*55 0.26 TCGA-FP-8211-01 21 33064675 33064675 A G SCAF4 Missense_Mutation p.I534T 0.29 possibly_damaging(0.784) TCGA-FP-8211-01 22 22599522 22599522 T A VPREB1 Missense_Mutation p.Y71N 0.31 deleterious(0) probably_damaging(0.989) TCGA-FP-8211-01 22 31737418 31737418 C A PATZ1 Intron 0.31 TCGA-FP-8211-01 22 38343297 38343297 G C C22orf23 Missense_Mutation p.Q114E 0.15 tolerated(0.06) benign(0.217) TCGA-FP-8211-01 2 157186462 157186462 G T NR4A2 Nonsense_Mutation p.Y79* 0.35 TCGA-FP-8211-01 2 172950706 172950706 C G DLX1 Missense_Mutation p.L101V 0.33 tolerated(0.11) benign(0.053) TCGA-FP-8211-01 2 219617528 219617528 G T TTLL4 Missense_Mutation p.V1007F 0.30 deleterious(0) probably_damaging(0.923) TCGA-FP-8211-01 2 61324903 61324913 AAGTTCATTGA - KIAA1841 Frame_Shift_Del p.S428Yfs*11 0.50 TCGA-FP-8211-01 2 69002222 69002222 C A ARHGAP25 Intron 0.23 TCGA-FP-8211-01 3 101383530 101383530 T C ZBTB11 Missense_Mutation p.K551R 0.32 tolerated(0.43) benign(0.012) TCGA-FP-8211-01 3 108147527 108147527 C A MYH15 Nonsense_Mutation p.E1192* 0.32 TCGA-FP-8211-01 3 12538034 12538034 C T TSEN2 Missense_Mutation p.P97S 0.22 deleterious(0) probably_damaging(0.939) TCGA-FP-8211-01 3 12560614 12560614 C G TSEN2 Missense_Mutation p.F339L 0.34 deleterious(0) probably_damaging(0.998) TCGA-FP-8211-01 3 148904424 148904424 C T CP Missense_Mutation p.D654N 0.31 deleterious(0.02) possibly_damaging(0.849) TCGA-FP-8211-01 3 171451290 171451290 C A PLD1 Nonsense_Mutation p.E184* 0.21 TCGA-FP-8211-01 3 171451291 171451291 C A PLD1 Silent p.L183L 0.21 TCGA-FP-8211-01 3 193002749 193002749 G A ATP13A5 Silent p.F1060F 0.34 TCGA-FP-8211-01 3 32031638 32031638 A C ZNF860 Missense_Mutation p.H356P 0.24 tolerated(0.2) benign(0.234) TCGA-FP-8211-01 3 52863229 52863229 C T ITIH4 Missense_Mutation p.V53I 0.29 tolerated(1) benign(0.182) TCGA-FP-8211-01 3 9512248 9512248 C G SETD5 Missense_Mutation p.L944V 0.26 tolerated(0.33) benign(0.063) TCGA-FP-8211-01 3 9712789 9712789 A C MTMR14 Silent p.R204R 0.27 TCGA-FP-8211-01 3 97356865 97356865 T G EPHA6 Missense_Mutation p.V908G 0.07 deleterious(0) probably_damaging(0.999) TCGA-FP-8211-01 4 134076151 134076151 G A PCDH10 Missense_Mutation p.D924N 0.32 tolerated(0.1) probably_damaging(0.995) TCGA-FP-8211-01 4 156860571 156860571 A G CTSO Silent p.Y168Y 0.61 TCGA-FP-8211-01 4 187527258 187527258 A G FAT1 Missense_Mutation p.V3439A 0.27 benign(0.002) TCGA-FP-8211-01 4 25780794 25780794 G C SEL1L3 Missense_Mutation p.A830G 0.45 tolerated(0.19) probably_damaging(0.941) TCGA-FP-8211-01 4 3478203 3478203 G T DOK7 Missense_Mutation p.D156Y 0.34 deleterious(0) probably_damaging(0.991) TCGA-FP-8211-01 4 57272680 57272680 G C PPAT Missense_Mutation p.A128G 0.36 deleterious(0.05) possibly_damaging(0.63) TCGA-FP-8211-01 4 71200843 71200843 G T CABS1 Silent p.G29G 0.38 TCGA-FP-8211-01 5 112175644 112175683 AGTACCTAAAAATAAAGCACCTACTGCTGAAAAGAGAGAG - APC Frame_Shift_Del p.P1453Dfs*7 0.43 TCGA-FP-8211-01 5 140731513 140731513 G A PCDHGB1 Silent p.A562A 0.33 TCGA-FP-8211-01 5 149459897 149459897 G T CSF1R Missense_Mutation p.P104T 0.30 deleterious(0.05) benign(0.025) TCGA-FP-8211-01 5 150310958 150310958 G A ZNF300P1 RNA 0.26 TCGA-FP-8211-01 5 176016062 176016062 G A CDHR2 Missense_Mutation p.V963I 0.37 tolerated(0.19) benign(0.015) TCGA-FP-8211-01 5 179545650 179545650 C T RASGEF1C Missense_Mutation p.A348T 0.29 deleterious(0) possibly_damaging(0.641) TCGA-FP-8211-01 5 180326123 180326123 G A BTNL8 5'UTR 0.26 TCGA-FP-8211-01 5 35065837 35065837 G A PRLR Missense_Mutation p.A408V 0.08 tolerated(0.26) benign(0.02) TCGA-FP-8211-01 6 160963737 160963737 T A LPA Missense_Mutation p.Q1834H 0.42 tolerated(0.08) possibly_damaging(0.778) TCGA-FP-8211-01 7 148497615 148497615 G C CUL1 Missense_Mutation p.E758Q 0.37 deleterious(0) probably_damaging(0.971) TCGA-FP-8211-01 7 150325594 150325594 C G GIMAP6 Missense_Mutation p.R31T 0.33 tolerated(0.29) benign(0.002) TCGA-FP-8211-01 7 21550647 21550647 G C SP4 Missense_Mutation p.K705N 0.31 deleterious(0) probably_damaging(0.999) TCGA-FP-8211-01 7 23226692 23226693 GG C NUPL2 Frame_Shift_Del p.M124Ifs*18 0.22 TCGA-FP-8211-01 7 31682578 31682578 G T CCDC129 Nonsense_Mutation p.E558* 0.37 TCGA-FP-8211-01 7 55910721 55910721 C T SEPT14 Missense_Mutation p.V158I 0.39 tolerated(1) benign(0.011) TCGA-FP-8211-01 7 86416131 86416131 C A GRM3 Missense_Mutation p.N341K 0.35 tolerated(0.35) benign(0.014) TCGA-FP-8211-01 8 133764031 133764031 C A TMEM71 Missense_Mutation p.S105I 0.72 tolerated(0.05) possibly_damaging(0.817) TCGA-FP-8211-01 8 133844573 133844573 G A PHF20L1 Missense_Mutation p.S613N 0.14 tolerated(0.19) benign(0.003) TCGA-FP-8211-01 8 144378436 144378436 C T ZNF696 Silent p.L197L 0.50 TCGA-FP-8211-01 8 145746159 145746159 C G LRRC14 Silent p.L289L 0.52 TCGA-FP-8211-01 8 17813267 17813267 G T PCM1 Intron 0.36 TCGA-FP-8211-01 9 125438067 125438067 G A OR1L3 Missense_Mutation p.R220K 0.52 tolerated(0.23) possibly_damaging(0.595) TCGA-FP-8211-01 9 139092519 139092519 T A LHX3 Nonsense_Mutation p.K59* 0.54 TCGA-FP-8211-01 9 23701496 23701496 G C ELAVL2 Missense_Mutation p.I198M 0.59 tolerated(0.08) benign(0.102) TCGA-FP-8211-01 9 711323 711323 G A KANK1 Missense_Mutation p.S186N 0.33 deleterious(0) probably_damaging(1) TCGA-FP-8211-01 9 79323163 79323163 C A PRUNE2 Nonsense_Mutation p.E1343* 0.63 TCGA-FP-8211-01 X 100629566 100629566 T A BTK Silent p.T66T 0.62 TCGA-FP-8211-01 X 71349892 71349892 A T RGAG4 Missense_Mutation p.I500K 0.76 deleterious_low_confidence(0) unknown(0) TCGA-FP-8211-01 Y 15029365 15029365 G T DDX3Y Missense_Mutation p.G605V 0.69 deleterious(0.01) possibly_damaging(0.77) TCGA-FP-8631-01 10 43622117 43622117 A G RET Missense_Mutation p.N1045S 0.34 tolerated_low_confidence(0.1) benign(0.002) TCGA-FP-8631-01 10 73053609 73053609 C G UNC5B Silent p.A698A 0.15 TCGA-FP-8631-01 10 74914192 74914193 - T ECD Frame_Shift_Ins p.I202Nfs*41 0.10 TCGA-FP-8631-01 11 1016412 1016414 GAG - MUC6 In_Frame_Del p.S2130del 0.24 TCGA-FP-8631-01 11 111572256 111572256 G A SIK2 Silent p.R228R 0.19 TCGA-FP-8631-01 11 16812631 16812631 C T PLEKHA7 Missense_Mutation p.R954Q 0.46 deleterious(0) probably_damaging(0.999) TCGA-FP-8631-01 11 26677708 26677708 C A ANO3 Missense_Mutation p.F871L 0.17 deleterious(0.05) benign(0.06) TCGA-FP-8631-01 11 309014 309014 C G IFITM2 Missense_Mutation p.S83C 0.26 deleterious(0.01) probably_damaging(0.972) TCGA-FP-8631-01 11 3381526 3381526 T A ZNF195 Missense_Mutation p.N238Y 0.21 tolerated(0.05) benign(0.091) TCGA-FP-8631-01 11 47330175 47330175 G T MADD Nonsense_Mutation p.E1265* 0.16 TCGA-FP-8631-01 11 48238439 48238439 T C OR4B1 Silent p.F26F 0.16 TCGA-FP-8631-01 11 55110764 55110764 T G OR4A16 Missense_Mutation p.L30V 0.13 deleterious_low_confidence(0) possibly_damaging(0.881) TCGA-FP-8631-01 11 55735801 55735801 G T OR10AG1 Missense_Mutation p.Q47K 0.15 deleterious(0.02) benign(0.163) TCGA-FP-8631-01 11 57472643 57472643 G C MED19 Silent p.A92A 0.18 TCGA-FP-8631-01 11 6265554 6265554 C G CNGA4 Missense_Mutation p.A548G 0.55 tolerated(0.68) probably_damaging(0.935) TCGA-FP-8631-01 11 64756506 64756506 G A BATF2 3'UTR 0.39 TCGA-FP-8631-01 12 100550470 100550470 A T AC010203.1 3'Flank 0.13 TCGA-FP-8631-01 12 102122964 102122964 C T SYCP3 Missense_Mutation p.D194N 0.21 tolerated(0.11) benign(0.1) TCGA-FP-8631-01 12 113388664 113388664 G A OAS3 Missense_Mutation p.S514N 0.22 tolerated(0.31) benign(0.001) TCGA-FP-8631-01 12 121768393 121768393 C A ANAPC5 Missense_Mutation p.G372V 0.28 tolerated(0.13) possibly_damaging(0.717) TCGA-FP-8631-01 12 123068996 123068996 A C KNTC1 Silent p.P1145P 0.47 TCGA-FP-8631-01 12 22208520 22208520 C T CMAS Nonsense_Mutation p.R179* 0.23 TCGA-FP-8631-01 12 26868707 26868707 T C ITPR2 Missense_Mutation p.Y229C 0.26 deleterious(0) possibly_damaging(0.886) TCGA-FP-8631-01 12 45610058 45610058 G C ANO6 5'UTR 0.33 TCGA-FP-8631-01 12 53170704 53170704 T C KRT76 Silent p.G124G 0.18 TCGA-FP-8631-01 12 53170707 53170707 A T KRT76 Silent p.G123G 0.19 TCGA-FP-8631-01 12 56214131 56214131 G C ORMDL2 Missense_Mutation p.K138N 0.16 deleterious(0.02) benign(0.41) TCGA-FP-8631-01 13 78492790 78492790 C G EDNRB Intron 0.35 TCGA-FP-8631-01 13 95050872 95050872 A T GPC6 Missense_Mutation p.N481I 0.42 deleterious(0.02) benign(0.411) TCGA-FP-8631-01 14 105353627 105353627 G A CEP170B Silent p.P1017P 0.56 TCGA-FP-8631-01 14 92264149 92264149 A C TC2N Missense_Mutation p.S279A 0.34 deleterious(0.03) possibly_damaging(0.816) TCGA-FP-8631-01 15 101566255 101566255 C T LRRK1 Missense_Mutation p.T773M 0.13 tolerated(0.11) probably_damaging(0.983) TCGA-FP-8631-01 15 22332468 22332468 T C RP11-69H14.6 RNA 0.07 TCGA-FP-8631-01 15 48779557 48779557 C T FBN1 Missense_Mutation p.E1139K 0.07 benign(0.174) TCGA-FP-8631-01 15 52664321 52664321 C T MYO5A Silent p.Q939Q 0.24 TCGA-FP-8631-01 16 21716356 21716356 C T OTOA Intron 0.15 TCGA-FP-8631-01 16 2376470 2376470 T A ABCA3 5'UTR 0.47 TCGA-FP-8631-01 16 30387532 30387532 G A MYLPF Missense_Mutation p.A55T 0.16 tolerated(0.1) possibly_damaging(0.611) TCGA-FP-8631-01 16 61851482 61851482 G A CDH8 Missense_Mutation p.S393L 0.12 tolerated(0.35) benign(0.214) TCGA-FP-8631-01 16 61851483 61851483 A G CDH8 Missense_Mutation p.S393P 0.12 tolerated(0.34) possibly_damaging(0.543) TCGA-FP-8631-01 16 77775522 77775522 A T NUDT7 Missense_Mutation p.N131I 0.32 deleterious(0.01) benign(0.403) TCGA-FP-8631-01 17 1579329 1579329 G A PRPF8 Nonsense_Mutation p.Q858* 0.40 TCGA-FP-8631-01 17 16343497 16343497 A G TRPV2 3'Flank 0.33 TCGA-FP-8631-01 17 29631855 29631855 C G EVI2B Missense_Mutation p.R258T 0.51 deleterious(0) possibly_damaging(0.765) TCGA-FP-8631-01 17 38185183 38185183 C A MED24 Silent p.L435L 0.28 TCGA-FP-8631-01 17 60525117 60525117 C G METTL2A Missense_Mutation p.F324L 0.18 deleterious(0) probably_damaging(0.967) TCGA-FP-8631-01 17 7577548 7577548 C T TP53 Missense_Mutation p.G245S 0.66 deleterious(0) probably_damaging(1) TCGA-FP-8631-01 17 79573783 79573783 C T NPLOC4 Silent p.G196G 0.21 TCGA-FP-8631-01 18 357517 357517 G A COLEC12 Nonsense_Mutation p.Q22* 0.17 TCGA-FP-8631-01 19 39390817 39390817 C G NFKBIB Missense_Mutation p.L49V 0.22 tolerated(0.07) possibly_damaging(0.795) TCGA-FP-8631-01 19 55603602 55603602 C T PPP1R12C Silent p.E716E 0.21 TCGA-FP-8631-01 19 56423693 56423693 G A NLRP13 Missense_Mutation p.T497M 0.27 deleterious(0.01) probably_damaging(0.959) TCGA-FP-8631-01 19 9066002 9066002 T C MUC16 Silent p.V7148V 0.08 TCGA-FP-8631-01 1 117564313 117564313 T G CD101 Missense_Mutation p.I712M 0.25 tolerated(0.14) benign(0.043) TCGA-FP-8631-01 1 117641498 117641498 G A TTF2 Missense_Mutation p.V1105I 0.20 deleterious(0) probably_damaging(0.912) TCGA-FP-8631-01 1 154574725 154574725 C T ADAR Silent p.Q131Q 0.36 TCGA-FP-8631-01 1 155177676 155177676 G C THBS3 5'UTR 0.18 TCGA-FP-8631-01 1 156640925 156640925 G A NES Missense_Mutation p.P1019S 0.33 tolerated(0.14) possibly_damaging(0.904) TCGA-FP-8631-01 1 16097029 16097029 T A FBLIM1 Missense_Mutation p.F223I 0.50 deleterious(0) probably_damaging(0.943) TCGA-FP-8631-01 1 161681106 161681106 G A FCRLA Missense_Mutation p.R137Q 0.32 tolerated(0.28) benign(0.272) TCGA-FP-8631-01 1 181724521 181724521 A G CACNA1E Missense_Mutation p.E1326G 0.14 deleterious(0.01) benign(0.333) TCGA-FP-8631-01 1 186057323 186057323 G A HMCN1 Silent p.T3164T 0.29 TCGA-FP-8631-01 1 220206907 220206907 T C EPRS Missense_Mutation p.R109G 0.39 deleterious(0.03) possibly_damaging(0.546) TCGA-FP-8631-01 1 231858321 231858321 C T DISC1 Intron 0.37 TCGA-FP-8631-01 1 234564922 234564922 G A TARBP1 Missense_Mutation p.A1007V 0.17 deleterious(0.01) probably_damaging(0.981) TCGA-FP-8631-01 1 2428074 2428074 C A PLCH2 Missense_Mutation p.L595M 0.09 deleterious(0) probably_damaging(0.975) TCGA-FP-8631-01 1 248128933 248128933 C T OR2AK2 Silent p.F100F 0.45 TCGA-FP-8631-01 1 27057803 27057804 CA - ARID1A Frame_Shift_Del p.Q505Vfs*117 0.27 TCGA-FP-8631-01 1 44476517 44476517 T C SLC6A9 Missense_Mutation p.Q96R 0.25 deleterious(0) benign(0.013) TCGA-FP-8631-01 20 13134713 13134714 TG ATC SPTLC3 Frame_Shift_Ins p.M448Nfs*9 0.09 TCGA-FP-8631-01 20 17341186 17341186 G T PCSK2 Missense_Mutation p.G136W 0.18 deleterious(0) probably_damaging(1) TCGA-FP-8631-01 20 2582792 2582792 G T TMC2 Nonsense_Mutation p.E420* 0.17 TCGA-FP-8631-01 20 40044276 40044276 C G CHD6 Missense_Mutation p.E2163D 0.12 tolerated(0.17) benign(0.012) TCGA-FP-8631-01 20 57899407 57899407 A G EDN3 Missense_Mutation p.S204G 0.14 tolerated_low_confidence(0.14) benign(0.258) TCGA-FP-8631-01 21 40800395 40800395 T - LCA5L Frame_Shift_Del p.T9Qfs*3 0.10 TCGA-FP-8631-01 21 45391318 45391318 G A AGPAT3 Silent p.P238P 0.46 TCGA-FP-8631-01 22 37455391 37455391 G A KCTD17 Silent p.E182E 0.24 TCGA-FP-8631-01 22 38130970 38130970 G C TRIOBP Missense_Mutation p.G1543R 0.51 deleterious_low_confidence(0.04) benign(0.131) TCGA-FP-8631-01 22 43600117 43600117 C T SCUBE1 Silent p.A951A 0.31 TCGA-FP-8631-01 2 109382496 109382496 G C RANBP2 Missense_Mutation p.G1834A 0.22 tolerated(0.15) benign(0.018) TCGA-FP-8631-01 2 162719476 162719476 C A SLC4A10 Missense_Mutation p.Q224K 0.27 deleterious(0.03) benign(0.046) TCGA-FP-8631-01 2 179424095 179424095 C A TTN Nonsense_Mutation p.E28922* 0.20 TCGA-FP-8631-01 2 218669153 218669153 T G TNS1 3'UTR 0.31 TCGA-FP-8631-01 2 227917059 227917059 G A COL4A4 Missense_Mutation p.P977L 0.30 unknown(0) TCGA-FP-8631-01 2 27590438 27590438 C T EIF2B4 Intron 0.25 TCGA-FP-8631-01 2 88883033 88883033 G A EIF2AK3 Nonsense_Mutation p.Q560* 0.19 TCGA-FP-8631-01 3 164750331 164750331 G T SI Missense_Mutation p.F905L 0.19 tolerated(0.11) benign(0.001) TCGA-FP-8631-01 3 170198405 170198405 G A SLC7A14 Missense_Mutation p.R556W 0.49 deleterious(0.01) probably_damaging(0.918) TCGA-FP-8631-01 3 179311619 179311619 A C MRPL47 Missense_Mutation p.L156R 0.06 deleterious(0) probably_damaging(0.998) TCGA-FP-8631-01 3 189607201 189607201 C T TP63 Missense_Mutation p.P527L 0.25 tolerated(0.28) benign(0.276) TCGA-FP-8631-01 3 197501044 197501044 C G FYTTD1 Missense_Mutation p.Q207E 0.15 tolerated(0.36) possibly_damaging(0.785) TCGA-FP-8631-01 3 38781019 38781019 C T SCN10A Missense_Mutation p.R756Q 0.22 deleterious(0) probably_damaging(0.997) TCGA-FP-8631-01 3 38913761 38913761 A C SCN11A Missense_Mutation p.L1140V 0.31 tolerated(0.09) benign(0.022) TCGA-FP-8631-01 3 48623397 48623397 C T COL7A1 Silent p.E1245E 0.19 TCGA-FP-8631-01 4 104067005 104067005 A G CENPE Missense_Mutation p.I1465T 0.22 benign(0.055) TCGA-FP-8631-01 4 106552283 106552283 T A ARHGEF38 Intron 0.18 TCGA-FP-8631-01 4 164466760 164466760 C T MARCH1 Missense_Mutation p.G187S 0.08 deleterious(0.03) benign(0.08) TCGA-FP-8631-01 4 48037691 48037691 G A NIPAL1 Silent p.L245L 0.16 TCGA-FP-8631-01 5 134364978 134364979 - A PITX1 Frame_Shift_Ins p.K146* 0.29 TCGA-FP-8631-01 5 140263750 140263750 A T PCDHA13 Missense_Mutation p.T633S 0.23 deleterious_low_confidence(0) probably_damaging(0.93) TCGA-FP-8631-01 5 150947107 150947107 G T FAT2 Silent p.S462S 0.20 TCGA-FP-8631-01 5 23524502 23524502 G C PRDM9 Missense_Mutation p.R337T 0.26 deleterious(0.04) benign(0.092) TCGA-FP-8631-01 5 23524503 23524503 G T PRDM9 Missense_Mutation p.R337S 0.26 tolerated(0.09) benign(0.047) TCGA-FP-8631-01 5 39002671 39002671 C A RICTOR Missense_Mutation p.V120L 0.22 tolerated(1) benign(0.23) TCGA-FP-8631-01 6 107956313 107956313 G A SOBP Silent p.K755K 0.24 TCGA-FP-8631-01 6 126080831 126080831 G A HEY2 Silent p.A299A 0.36 TCGA-FP-8631-01 6 132636888 132636888 C T MOXD1 Missense_Mutation p.C465Y 0.23 deleterious(0) probably_damaging(1) TCGA-FP-8631-01 6 29795915 29795915 G A HLA-G Silent p.T55T 0.25 TCGA-FP-8631-01 6 36978786 36978786 C T FGD2 Missense_Mutation p.T113I 0.13 deleterious(0) probably_damaging(1) TCGA-FP-8631-01 6 41889329 41889330 - G BYSL Frame_Shift_Ins p.Q13Sfs*88 0.15 TCGA-FP-8631-01 7 101839960 101839960 G A CUX1 Silent p.P434P 0.08 TCGA-FP-8631-01 7 11630118 11630118 G A THSD7A Silent p.L474L 0.12 TCGA-FP-8631-01 7 21598510 21598510 A G DNAH11 Missense_Mutation p.K196E 0.30 benign(0.197) TCGA-FP-8631-01 7 42116407 42116407 G C GLI3 Silent p.A139A 0.15 TCGA-FP-8631-01 7 42116408 42116408 G T GLI3 Missense_Mutation p.A139D 0.16 tolerated(0.11) benign(0.016) TCGA-FP-8631-01 7 99227574 99227574 C T ZSCAN25 Silent p.S522S 0.58 TCGA-FP-8631-01 8 124138363 124138363 A C TBC1D31 Missense_Mutation p.E546D 0.15 deleterious(0) probably_damaging(0.921) TCGA-FP-8631-01 8 134239806 134239806 C T WISP1 Silent p.D319D 0.16 TCGA-FP-8631-01 8 139833387 139833387 G C COL22A1 Missense_Mutation p.P413A 0.15 unknown(0) TCGA-FP-8631-01 8 144998480 144998480 C T PLEC Missense_Mutation p.E2010K 0.09 unknown(0) TCGA-FP-8631-01 8 15519792 15519792 C A TUSC3 Missense_Mutation p.A232D 0.21 deleterious(0) probably_damaging(0.948) TCGA-FP-8631-01 8 27729526 27729526 G A SCARA5 Silent p.R471R 0.17 TCGA-FP-8631-01 8 82441753 82441753 T A FABP12 Missense_Mutation p.S56C 0.17 deleterious(0.02) probably_damaging(0.998) TCGA-FP-8631-01 9 111640313 111640313 T - IKBKAP Frame_Shift_Del p.I1273Ffs*15 0.21 TCGA-FP-8631-01 9 114875119 114875119 G A SUSD1 Silent p.L306L 0.22 TCGA-FP-8631-01 X 3002363 3002363 C T ARSF Silent p.Y162Y 0.23 TCGA-FP-8631-01 X 30254929 30254929 T C MAGEB3 Silent p.N296N 0.64 TCGA-FP-8631-01 X 53579769 53579769 G A HUWE1 Silent p.S2860S 0.33 TCGA-FP-A4BE-01 10 101558979 101558979 A - ABCC2 Frame_Shift_Del p.K297Rfs*14 0.33 TCGA-FP-A4BE-01 10 101841226 101841226 G A CPN1 Missense_Mutation p.R53C 0.24 deleterious(0) possibly_damaging(0.902) TCGA-FP-A4BE-01 10 102738018 102738018 C T MRPL43 3'Flank 0.36 TCGA-FP-A4BE-01 10 103339479 103339479 G A POLL Missense_Mutation p.R487W 0.36 deleterious(0) probably_damaging(1) TCGA-FP-A4BE-01 10 104233581 104233581 G A TMEM180 Missense_Mutation p.R368H 0.21 deleterious(0) probably_damaging(0.995) TCGA-FP-A4BE-01 10 105218347 105218347 C T CALHM1 Silent p.A54A 0.39 TCGA-FP-A4BE-01 10 107022147 107022147 A T SORCS3 Missense_Mutation p.I1168F 0.33 deleterious(0) possibly_damaging(0.825) TCGA-FP-A4BE-01 10 111877137 111877137 T C ADD3 Missense_Mutation p.I175T 0.10 tolerated(0.12) benign(0.297) TCGA-FP-A4BE-01 10 115348720 115348720 A G NRAP 3'UTR 0.18 TCGA-FP-A4BE-01 10 115348893 115348893 C T HABP2 3'UTR 0.38 TCGA-FP-A4BE-01 10 115885658 115885658 T - C10orf118 Frame_Shift_Del p.N867Ifs*4 0.27 TCGA-FP-A4BE-01 10 116060074 116060074 G A AFAP1L2 Silent p.T612T 0.28 TCGA-FP-A4BE-01 10 118435931 118435931 C T HSPA12A Missense_Mutation p.D457N 0.24 tolerated(0.17) benign(0.032) TCGA-FP-A4BE-01 10 11994153 11994153 C T UPF2 Silent p.L982L 0.24 TCGA-FP-A4BE-01 10 120802226 120802226 G A EIF3A Missense_Mutation p.R936W 0.32 deleterious(0.01) probably_damaging(0.991) TCGA-FP-A4BE-01 10 120825026 120825026 G A EIF3A Missense_Mutation p.T336M 0.22 deleterious(0.03) unknown(0) TCGA-FP-A4BE-01 10 12206310 12206310 G A SEC61A2 Missense_Mutation p.A430T 0.27 deleterious(0.05) benign(0.226) TCGA-FP-A4BE-01 10 123325146 123325146 C T FGFR2 Missense_Mutation p.R61H 0.22 tolerated(0.43) benign(0.003) TCGA-FP-A4BE-01 10 123842358 123842358 G A TACC2 Missense_Mutation p.E115K 0.28 probably_damaging(0.935) TCGA-FP-A4BE-01 10 124266284 124266284 G A HTRA1 Silent p.P285P 0.34 TCGA-FP-A4BE-01 10 134039074 134039074 G A STK32C Silent p.D243D 0.27 TCGA-FP-A4BE-01 10 134218973 134218973 G A PWWP2B Silent p.P323P 0.12 TCGA-FP-A4BE-01 10 134563060 134563060 G A INPP5A Missense_Mutation p.A258T 0.32 tolerated(0.46) probably_damaging(0.948) TCGA-FP-A4BE-01 10 135053733 135053733 C T VENTX Missense_Mutation p.R234W 0.26 deleterious(0.03) benign(0.249) TCGA-FP-A4BE-01 10 135346255 135346255 A - CYP2E1 Frame_Shift_Del p.N238Mfs*5 0.18 TCGA-FP-A4BE-01 10 16911647 16911647 G A CUBN Missense_Mutation p.R3148W 0.29 tolerated(0.09) benign(0.005) TCGA-FP-A4BE-01 10 17645563 17645563 T C PTPLA Missense_Mutation p.K160R 0.21 tolerated(0.28) benign(0.016) TCGA-FP-A4BE-01 10 23295876 23295876 C T ARMC3 Missense_Mutation p.R599W 0.23 deleterious(0) probably_damaging(1) TCGA-FP-A4BE-01 10 24832428 24832428 A G KIAA1217 Missense_Mutation p.D1410G 0.28 deleterious(0.05) possibly_damaging(0.84) TCGA-FP-A4BE-01 10 26463099 26463103 AAAAG - MYO3A Frame_Shift_Del p.K1305Dfs*23 0.25 TCGA-FP-A4BE-01 10 27324397 27324397 A G ANKRD26 Silent p.N994N 0.26 TCGA-FP-A4BE-01 10 30306780 30306780 C T KIAA1462 3'UTR 0.21 TCGA-FP-A4BE-01 10 30915774 30915774 C T LYZL2 Missense_Mutation p.R70H 0.16 deleterious(0.02) benign(0.025) TCGA-FP-A4BE-01 10 43285923 43285923 G T BMS1 Missense_Mutation p.K200N 0.31 deleterious(0) probably_damaging(0.999) TCGA-FP-A4BE-01 10 46254807 46254808 AA - FAM21C Frame_Shift_Del p.K532Dfs*9 0.17 TCGA-FP-A4BE-01 10 47915922 47915923 AA - FAM21B Frame_Shift_Del p.K444Dfs*9 0.17 TCGA-FP-A4BE-01 10 50820281 50820281 C A SLC18A3 Missense_Mutation p.L499M 0.35 tolerated(1) benign(0.036) TCGA-FP-A4BE-01 10 52103962 52103962 G A SGMS1 5'UTR 0.27 TCGA-FP-A4BE-01 10 53457860 53457860 C T CSTF2T Missense_Mutation p.G484R 0.23 deleterious_low_confidence(0.02) unknown(0) TCGA-FP-A4BE-01 10 55698590 55698590 G A PCDH15 Nonsense_Mutation p.R1120* 0.19 TCGA-FP-A4BE-01 10 5827990 5827990 G A GDI2 Missense_Mutation p.R138C 0.26 deleterious(0) benign(0.061) TCGA-FP-A4BE-01 10 60558307 60558307 T G BICC1 Silent p.T505T 0.16 TCGA-FP-A4BE-01 10 60588648 60588648 G A BICC1 Nonsense_Mutation p.W974* 0.28 TCGA-FP-A4BE-01 10 62648131 62648131 C T RHOBTB1 Missense_Mutation p.G432D 0.40 tolerated(0.49) possibly_damaging(0.832) TCGA-FP-A4BE-01 10 68686216 68686216 T A LRRTM3 5'UTR 0.25 TCGA-FP-A4BE-01 10 71142514 71142514 C T HK1 Missense_Mutation p.P517S 0.29 deleterious(0) probably_damaging(0.977) TCGA-FP-A4BE-01 10 71154810 71154810 C T HK1 Missense_Mutation p.T779M 0.20 tolerated(0.07) possibly_damaging(0.609) TCGA-FP-A4BE-01 10 71244904 71244904 A T TSPAN15 Missense_Mutation p.Y97F 0.25 tolerated(0.33) benign(0.021) TCGA-FP-A4BE-01 10 71392612 71392612 G A C10orf35 Missense_Mutation p.A55T 0.23 tolerated(0.29) benign(0.287) TCGA-FP-A4BE-01 10 71902581 71902581 G A TYSND1 Silent p.G442G 0.31 TCGA-FP-A4BE-01 10 71903616 71903616 C T TYSND1 Missense_Mutation p.A427T 0.17 tolerated(0.24) benign(0.034) TCGA-FP-A4BE-01 10 72360283 72360283 G A PRF1 Missense_Mutation p.R126C 0.39 deleterious(0.02) possibly_damaging(0.676) TCGA-FP-A4BE-01 10 72493785 72493785 G A ADAMTS14 Splice_Site p.X454_splice 0.32 TCGA-FP-A4BE-01 10 73578796 73578796 C T PSAP Missense_Mutation p.V475M 0.15 deleterious(0) probably_damaging(0.971) TCGA-FP-A4BE-01 10 75451802 75451802 T C AGAP5 Missense_Mutation p.H132R 0.12 deleterious_low_confidence(0) benign(0.027) TCGA-FP-A4BE-01 10 79576827 79576827 G A DLG5 Missense_Mutation p.A1271V 0.35 deleterious(0.05) benign(0.082) TCGA-FP-A4BE-01 10 85961676 85961676 G T CDHR1 Missense_Mutation p.K213N 0.13 deleterious(0.01) possibly_damaging(0.827) TCGA-FP-A4BE-01 10 88679226 88679226 G T BMPR1A Missense_Mutation p.S389I 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-FP-A4BE-01 10 89268174 89268174 A - MINPP1 Frame_Shift_Del p.N242Mfs*21 0.21 TCGA-FP-A4BE-01 10 89717672 89717672 C T PTEN Nonsense_Mutation p.R233* 0.50 TCGA-FP-A4BE-01 10 93841161 93841161 G A CPEB3 Silent p.R595R 0.31 TCGA-FP-A4BE-01 10 95848918 95848918 G A PLCE1 Intron 0.29 TCGA-FP-A4BE-01 10 97919833 97919833 A - ZNF518A RNA 0.16 TCGA-FP-A4BE-01 10 98078230 98078230 G A DNTT Missense_Mutation p.E109K 0.30 deleterious(0.01) possibly_damaging(0.823) TCGA-FP-A4BE-01 10 98742762 98742762 A - C10orf12 Frame_Shift_Del p.N540Ifs*63 0.29 TCGA-FP-A4BE-01 10 99619319 99619319 C - GOLGA7B Frame_Shift_Del p.P41Qfs*16 0.29 TCGA-FP-A4BE-01 11 103027444 103027444 C T DYNC2H1 Missense_Mutation p.R1358C 0.30 possibly_damaging(0.797) TCGA-FP-A4BE-01 11 103866791 103866791 A G PDGFD Splice_Site p.X170_splice 0.18 TCGA-FP-A4BE-01 11 104871161 104871161 G A CASP5 Missense_Mutation p.T273M 0.28 deleterious(0.03) probably_damaging(0.968) TCGA-FP-A4BE-01 11 107799374 107799374 G A RAB39A Missense_Mutation p.R27H 0.38 tolerated(0.24) benign(0.052) TCGA-FP-A4BE-01 11 10785261 10785262 - T CTR9 Frame_Shift_Ins p.G346Wfs*11 0.20 TCGA-FP-A4BE-01 11 107975052 107975052 G A CUL5 Missense_Mutation p.E762K 0.10 deleterious(0.01) possibly_damaging(0.603) TCGA-FP-A4BE-01 11 108044069 108044069 T - NPAT Frame_Shift_Del p.S548Vfs*11 0.23 TCGA-FP-A4BE-01 11 108202191 108202191 A G ATM Silent p.P2512P 0.34 TCGA-FP-A4BE-01 11 118245730 118245730 C T UBE4A Silent p.G419G 0.30 TCGA-FP-A4BE-01 11 118343854 118343854 C T KMT2A Silent p.D660D 0.24 TCGA-FP-A4BE-01 11 118379895 118379895 C T KMT2A Missense_Mutation p.A3627V 0.19 benign(0.002) TCGA-FP-A4BE-01 11 118451978 118451978 G A ARCN1 Silent p.A7A 0.31 TCGA-FP-A4BE-01 11 118922809 118922809 C T HYOU1 Missense_Mutation p.V400M 0.35 deleterious(0.01) probably_damaging(0.973) TCGA-FP-A4BE-01 11 119003254 119003254 G A HINFP Missense_Mutation p.R242Q 0.26 deleterious(0) probably_damaging(0.985) TCGA-FP-A4BE-01 11 119183610 119183610 G T MCAM Silent p.T203T 0.31 TCGA-FP-A4BE-01 11 119243475 119243475 G A USP2 Missense_Mutation p.T239M 0.41 tolerated(0.06) benign(0.009) TCGA-FP-A4BE-01 11 120322250 120322250 C T ARHGEF12 Missense_Mutation p.R625C 0.23 deleterious(0) probably_damaging(0.985) TCGA-FP-A4BE-01 11 12234823 12234823 G A MICAL2 Missense_Mutation p.R238H 0.29 deleterious(0) probably_damaging(0.997) TCGA-FP-A4BE-01 11 122678880 122678880 G A UBASH3B Missense_Mutation p.R603Q 0.28 tolerated(0.22) probably_damaging(0.982) TCGA-FP-A4BE-01 11 122795636 122795636 C T C11orf63 Missense_Mutation p.T299M 0.28 tolerated(0.35) benign(0.139) TCGA-FP-A4BE-01 11 123777975 123777975 C A OR8D4 Silent p.T279T 0.33 TCGA-FP-A4BE-01 11 123814164 123814164 G A OR6T1 Nonsense_Mutation p.R128* 0.30 TCGA-FP-A4BE-01 11 124006953 124006953 A G VWA5A Missense_Mutation p.R493G 0.28 tolerated(0.05) benign(0.008) TCGA-FP-A4BE-01 11 124951749 124951749 G A SLC37A2 Missense_Mutation p.G278R 0.34 tolerated(0.46) benign(0.003) TCGA-FP-A4BE-01 11 125648684 125648684 A G PATE2 5'UTR 0.24 TCGA-FP-A4BE-01 11 125769531 125769531 C T HYLS1 Nonsense_Mutation p.R90* 0.20 TCGA-FP-A4BE-01 11 128774454 128774454 G A C11orf45 Missense_Mutation p.T3M 0.32 tolerated_low_confidence(1) benign(0.001) TCGA-FP-A4BE-01 11 12901159 12901159 C A TEAD1 Intron 0.36 TCGA-FP-A4BE-01 11 130318984 130318984 G A ADAMTS15 Missense_Mutation p.R39H 0.26 tolerated(1) benign(0.001) TCGA-FP-A4BE-01 11 13380010 13380010 G A ARNTL Missense_Mutation p.R84H 0.24 deleterious(0) probably_damaging(1) TCGA-FP-A4BE-01 11 13393940 13393941 - T ARNTL Frame_Shift_Ins p.V352Cfs*23 0.25 TCGA-FP-A4BE-01 11 134073581 134073581 G A NCAPD3 Missense_Mutation p.A479V 0.27 tolerated(0.31) benign(0.004) TCGA-FP-A4BE-01 11 17139208 17139208 C A PIK3C2A Missense_Mutation p.D1016Y 0.39 deleterious(0) probably_damaging(0.994) TCGA-FP-A4BE-01 11 17793306 17793306 C T KCNC1 Missense_Mutation p.T222M 0.36 deleterious(0.01) probably_damaging(0.969) TCGA-FP-A4BE-01 11 18655950 18655950 T C SPTY2D1 5'UTR 0.32 TCGA-FP-A4BE-01 11 18750529 18750529 G A PTPN5 Silent p.H550H 0.29 TCGA-FP-A4BE-01 11 18750571 18750571 G A PTPN5 Silent p.G536G 0.31 TCGA-FP-A4BE-01 11 18955962 18955962 C T MRGPRX1 Missense_Mutation p.V124I 0.18 tolerated(0.17) benign(0.16) TCGA-FP-A4BE-01 11 20005785 20005785 C T NAV2 Silent p.D943D 0.30 TCGA-FP-A4BE-01 11 2193005 2193005 G - TH Frame_Shift_Del p.D5Tfs*27 0.21 TCGA-FP-A4BE-01 11 27523054 27523054 G A LIN7C Silent p.N72N 0.35 TCGA-FP-A4BE-01 11 35641478 35641478 G A FJX1 Missense_Mutation p.G432S 0.27 tolerated(0.6) benign(0.241) TCGA-FP-A4BE-01 11 36614878 36614878 T G RAG2 Missense_Mutation p.N281H 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-FP-A4BE-01 11 377226 377226 C T B4GALNT4 Silent p.N701N 0.44 TCGA-FP-A4BE-01 11 44080011 44080011 T C ACCSL Splice_Site p.X490_splice 0.36 TCGA-FP-A4BE-01 11 45935996 45935996 A G PEX16 Missense_Mutation p.W189R 0.31 deleterious(0) probably_damaging(0.998) TCGA-FP-A4BE-01 11 45948373 45948373 C - GYLTL1B Frame_Shift_Del p.R428Gfs*30 0.21 TCGA-FP-A4BE-01 11 46818454 46818454 C T CKAP5 Missense_Mutation p.A459T 0.29 deleterious(0) probably_damaging(0.928) TCGA-FP-A4BE-01 11 47435268 47435268 C T SLC39A13 Intron 0.24 TCGA-FP-A4BE-01 11 47800573 47800573 C T NUP160 3'UTR 0.44 TCGA-FP-A4BE-01 11 48327887 48327888 - G OR4S1 Frame_Shift_Ins p.N40Efs*11 0.24 TCGA-FP-A4BE-01 11 4903803 4903803 G A OR51T1 Missense_Mutation p.R252H 0.22 tolerated(0.31) benign(0.123) TCGA-FP-A4BE-01 11 5153372 5153372 G A OR52A5 Silent p.C167C 0.20 TCGA-FP-A4BE-01 11 5344773 5344773 G A OR51B2 Missense_Mutation p.T252I 0.20 deleterious(0) possibly_damaging(0.848) TCGA-FP-A4BE-01 11 55110922 55110922 C G OR4A16 Missense_Mutation p.D82E 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.698) TCGA-FP-A4BE-01 11 55321970 55321970 A C OR4C15 Missense_Mutation p.E63A 0.17 deleterious_low_confidence(0) possibly_damaging(0.65) TCGA-FP-A4BE-01 11 563682 563682 C T RASSF7 3'UTR 0.27 TCGA-FP-A4BE-01 11 56431942 56431942 A C OR5AR1 Silent p.R261R 0.25 TCGA-FP-A4BE-01 11 56756801 56756801 G A OR5AK2 Missense_Mutation p.R138Q 0.29 tolerated(0.81) benign(0.009) TCGA-FP-A4BE-01 11 57076566 57076566 C T TNKS1BP1 Missense_Mutation p.G1207S 0.23 tolerated(0.85) benign(0.003) TCGA-FP-A4BE-01 11 57117242 57117242 T G P2RX3 Missense_Mutation p.L192R 0.33 deleterious(0.05) possibly_damaging(0.739) TCGA-FP-A4BE-01 11 58877138 58877138 G A FAM111B Missense_Mutation p.A14T 0.33 tolerated(0.24) benign(0.015) TCGA-FP-A4BE-01 11 59271719 59271719 C T OR4D11 Missense_Mutation p.T224M 0.30 tolerated(1) benign(0.003) TCGA-FP-A4BE-01 11 60901619 60901619 G A VPS37C Missense_Mutation p.R52W 0.31 deleterious(0) probably_damaging(0.959) TCGA-FP-A4BE-01 11 61563897 61563897 G A FEN1 Missense_Mutation p.R355H 0.35 deleterious(0) possibly_damaging(0.652) TCGA-FP-A4BE-01 11 61719264 61719264 G A BEST1 Intron 0.26 TCGA-FP-A4BE-01 11 62488859 62488859 T C HNRNPUL2 Missense_Mutation p.S507G 0.25 deleterious(0.02) benign(0.02) TCGA-FP-A4BE-01 11 62563573 62563573 C T NXF1 Missense_Mutation p.V476I 0.25 tolerated(0.6) benign(0) TCGA-FP-A4BE-01 11 62648709 62648709 G A SLC3A2 Missense_Mutation p.A174T 0.36 deleterious(0) probably_damaging(0.993) TCGA-FP-A4BE-01 11 6292370 6292370 C T CCKBR Missense_Mutation p.P314L 0.36 tolerated(0.2) benign(0.003) TCGA-FP-A4BE-01 11 63594444 63594444 C T C11orf84 Missense_Mutation p.R327C 0.34 deleterious_low_confidence(0) possibly_damaging(0.861) TCGA-FP-A4BE-01 11 63672362 63672362 G A MARK2 Missense_Mutation p.R594Q 0.28 deleterious(0) possibly_damaging(0.82) TCGA-FP-A4BE-01 11 63676765 63676765 G A MARK2 3'UTR 0.26 TCGA-FP-A4BE-01 11 63719965 63719965 A G NAA40 Missense_Mutation p.E113G 0.25 tolerated(0.29) benign(0.016) TCGA-FP-A4BE-01 11 63764867 63764867 C T OTUB1 Missense_Mutation p.A222V 0.30 deleterious(0) probably_damaging(0.986) TCGA-FP-A4BE-01 11 64014040 64014040 C T PPP1R14B Missense_Mutation p.A36T 0.26 tolerated(0.32) benign(0.008) TCGA-FP-A4BE-01 11 64030200 64030200 C T PLCB3 Missense_Mutation p.R759W 0.36 deleterious(0) probably_damaging(0.929) TCGA-FP-A4BE-01 11 6415560 6415560 G T SMPD1 Missense_Mutation p.R540M 0.23 deleterious(0.04) possibly_damaging(0.819) TCGA-FP-A4BE-01 11 6431940 6431940 C T APBB1 Missense_Mutation p.R213Q 0.20 tolerated(1) benign(0.071) TCGA-FP-A4BE-01 11 64877351 64877351 G A VPS51 Missense_Mutation p.V612I 0.20 deleterious(0.01) possibly_damaging(0.896) TCGA-FP-A4BE-01 11 64974022 64974022 G A CAPN1 Missense_Mutation p.R481Q 0.29 deleterious(0.01) probably_damaging(0.975) TCGA-FP-A4BE-01 11 65055240 65055240 A C POLA2 Missense_Mutation p.S354R 0.36 deleterious(0) probably_damaging(0.918) TCGA-FP-A4BE-01 11 65161866 65161866 A C FRMD8 Missense_Mutation p.Q184P 0.45 tolerated(0.22) possibly_damaging(0.46) TCGA-FP-A4BE-01 11 65347646 65347646 G A EHBP1L1 Missense_Mutation p.R136Q 0.14 tolerated(0.12) probably_damaging(0.978) TCGA-FP-A4BE-01 11 65360996 65360996 G A KCNK7 Silent p.G223G 0.27 TCGA-FP-A4BE-01 11 65422382 65422382 G A RELA Nonsense_Mutation p.Q375* 0.25 TCGA-FP-A4BE-01 11 65733549 65733549 G A SART1 Missense_Mutation p.V281M 0.22 deleterious(0) probably_damaging(0.998) TCGA-FP-A4BE-01 11 66260284 66260284 C A DPP3 Silent p.T362T 0.24 TCGA-FP-A4BE-01 11 66263135 66263135 G A DPP3 Missense_Mutation p.V538M 0.32 deleterious(0) possibly_damaging(0.855) TCGA-FP-A4BE-01 11 66359045 66359046 - T CCDC87 Frame_Shift_Ins p.M481Nfs*4 0.25 TCGA-FP-A4BE-01 11 6638921 6638921 C T TPP1 Missense_Mutation p.A106T 0.27 tolerated(0.48) benign(0.077) TCGA-FP-A4BE-01 11 67401817 67401817 C T TBX10 Missense_Mutation p.S131N 0.42 tolerated(0.15) possibly_damaging(0.538) TCGA-FP-A4BE-01 11 67815010 67815010 C T TCIRG1 Nonsense_Mutation p.R426* 0.31 TCGA-FP-A4BE-01 11 67833931 67833931 C T CHKA Missense_Mutation p.M327I 0.19 deleterious(0.04) possibly_damaging(0.823) TCGA-FP-A4BE-01 11 70281565 70281565 G A CTTN Intron 0.50 TCGA-FP-A4BE-01 11 71714508 71714508 A - NUMA1 3'UTR 0.20 TCGA-FP-A4BE-01 11 72040798 72040798 C T CLPB Missense_Mutation p.A306T 0.20 tolerated(0.14) benign(0.401) TCGA-FP-A4BE-01 11 72945324 72945324 C T P2RY2 Silent p.Y40Y 0.23 TCGA-FP-A4BE-01 11 73076806 73076806 G A ARHGEF17 Missense_Mutation p.G1937S 0.23 deleterious(0) probably_damaging(0.997) TCGA-FP-A4BE-01 11 7334640 7334640 G A SYT9 Missense_Mutation p.R171Q 0.35 tolerated(0.39) probably_damaging(0.961) TCGA-FP-A4BE-01 11 73712551 73712551 C T UCP3 Missense_Mutation p.R282H 0.29 deleterious(0) probably_damaging(0.989) TCGA-FP-A4BE-01 11 74013510 74013510 A G P4HA3 Silent p.G157G 0.32 TCGA-FP-A4BE-01 11 74109260 74109260 G - PGM2L1 5'UTR 0.26 TCGA-FP-A4BE-01 11 75316960 75316960 C T MAP6 Silent p.V403V 0.29 TCGA-FP-A4BE-01 11 76371225 76371225 A G LRRC32 Missense_Mutation p.L471P 0.26 deleterious(0) probably_damaging(1) TCGA-FP-A4BE-01 11 76750724 76750724 G A B3GNT6 Silent p.P43P 0.34 TCGA-FP-A4BE-01 11 76916549 76916549 G A MYO7A Silent p.T1841T 0.21 TCGA-FP-A4BE-01 11 77377952 77377952 A - RSF1 3'UTR 0.21 TCGA-FP-A4BE-01 11 78369242 78369243 - C TENM4 Frame_Shift_Ins p.E2724Gfs*67 0.25 TCGA-FP-A4BE-01 11 78423591 78423591 G - TENM4 Frame_Shift_Del p.F1331Lfs*30 0.21 TCGA-FP-A4BE-01 11 812614 812614 T G RPLP2 Silent p.A84A 0.29 TCGA-FP-A4BE-01 11 82924235 82924235 A - ANKRD42 Intron 0.29 TCGA-FP-A4BE-01 11 94326704 94326704 G A PIWIL4 Silent p.S349S 0.24 TCGA-FP-A4BE-01 12 10271122 10271122 C T CLEC7A Missense_Mutation p.V227I 0.31 tolerated(0.3) benign(0.004) TCGA-FP-A4BE-01 12 10370690 10370690 G T GABARAPL1 Missense_Mutation p.R40M 0.29 deleterious(0.02) possibly_damaging(0.834) TCGA-FP-A4BE-01 12 106633724 106633724 A G CKAP4 Missense_Mutation p.I296T 0.30 tolerated(0.06) benign(0.037) TCGA-FP-A4BE-01 12 10862590 10862590 G A YBX3 Missense_Mutation p.R233W 0.41 tolerated(0.09) probably_damaging(0.997) TCGA-FP-A4BE-01 12 108686697 108686697 C T CMKLR1 Missense_Mutation p.G15S 0.31 tolerated(0.77) benign(0.002) TCGA-FP-A4BE-01 12 109523509 109523509 G A USP30 Missense_Mutation p.V443I 0.31 deleterious(0) probably_damaging(0.998) TCGA-FP-A4BE-01 12 109889523 109889523 C A KCTD10 Missense_Mutation p.E273D 0.24 tolerated(0.14) benign(0.07) TCGA-FP-A4BE-01 12 110466232 110466232 G A ANKRD13A Intron 0.35 TCGA-FP-A4BE-01 12 110924487 110924487 G A FAM216A Silent p.Q195Q 0.24 TCGA-FP-A4BE-01 12 11174837 11174837 T C TAS2R19 Missense_Mutation p.N112D 0.41 deleterious(0) probably_damaging(0.984) TCGA-FP-A4BE-01 12 111990087 111990087 T - ATXN2 Frame_Shift_Del p.R350Efs*13 0.17 TCGA-FP-A4BE-01 12 112846122 112846124 CTC - RPL6 In_Frame_Del p.E86del 0.32 TCGA-FP-A4BE-01 12 113433246 113433246 T C OAS2 Silent p.D198D 0.19 TCGA-FP-A4BE-01 12 113448320 113448320 G A OAS2 3'UTR 0.29 TCGA-FP-A4BE-01 12 113599728 113599728 C T DDX54 Missense_Mutation p.R757H 0.32 tolerated(0.21) benign(0.005) TCGA-FP-A4BE-01 12 113745599 113745599 G A SLC8B1 Silent p.A436A 0.34 TCGA-FP-A4BE-01 12 114793454 114793454 G A TBX5 Silent p.G480G 0.26 TCGA-FP-A4BE-01 12 115112565 115112565 G A TBX3 Missense_Mutation p.A392V 0.29 tolerated(0.27) benign(0.003) TCGA-FP-A4BE-01 12 118469166 118469166 G T RFC5 3'UTR 0.20 TCGA-FP-A4BE-01 12 118520178 118520178 T C VSIG10 Missense_Mutation p.T140A 0.16 deleterious(0) possibly_damaging(0.877) TCGA-FP-A4BE-01 12 12022526 12022526 G A ETV6 Missense_Mutation p.R211H 0.25 tolerated(0.18) benign(0.01) TCGA-FP-A4BE-01 12 120592843 120592843 C T GCN1L1 Missense_Mutation p.R1211Q 0.19 probably_damaging(0.929) TCGA-FP-A4BE-01 12 121448671 121448671 G A C12orf43 Nonsense_Mutation p.R83* 0.30 TCGA-FP-A4BE-01 12 122107285 122107285 G A MORN3 Silent p.G35G 0.26 TCGA-FP-A4BE-01 12 122669300 122669300 C T LRRC43 Missense_Mutation p.R129W 0.32 deleterious(0) probably_damaging(0.994) TCGA-FP-A4BE-01 12 122839720 122839720 G A CLIP1 Missense_Mutation p.T382M 0.32 deleterious(0) probably_damaging(0.997) TCGA-FP-A4BE-01 12 123187048 123187048 C T HCAR2 Silent p.S261S 0.08 TCGA-FP-A4BE-01 12 123466320 123466322 GAA - ARL6IP4 In_Frame_Del p.K247del 0.47 TCGA-FP-A4BE-01 12 124303577 124303577 G A DNAH10 Silent p.E1169E 0.40 TCGA-FP-A4BE-01 12 124421949 124421949 A G CCDC92 Missense_Mutation p.F218L 0.40 tolerated(0.34) benign(0.05) TCGA-FP-A4BE-01 12 124915184 124915184 G A NCOR2 Silent p.R344R 0.26 TCGA-FP-A4BE-01 12 130184621 130184622 - C TMEM132D Frame_Shift_Ins p.E235* 0.27 TCGA-FP-A4BE-01 12 130184715 130184715 A G TMEM132D Missense_Mutation p.F203S 0.31 deleterious(0) probably_damaging(0.977) TCGA-FP-A4BE-01 12 13211445 13211445 T C KIAA1467 Missense_Mutation p.L165P 0.30 deleterious(0) probably_damaging(0.998) TCGA-FP-A4BE-01 12 132479502 132479502 G A EP400 Splice_Site p.X943_splice 0.38 TCGA-FP-A4BE-01 12 132497672 132497672 G A EP400 Missense_Mutation p.R1187H 0.26 unknown(0) TCGA-FP-A4BE-01 12 132504716 132504716 G A EP400 Missense_Mutation p.R1467Q 0.32 unknown(0) TCGA-FP-A4BE-01 12 132628350 132628350 T C DDX51 Missense_Mutation p.T137A 0.36 tolerated(0.73) benign(0.001) TCGA-FP-A4BE-01 12 133236047 133236047 G A POLE Missense_Mutation p.R1037C 0.15 deleterious(0) probably_damaging(0.999) TCGA-FP-A4BE-01 12 133764591 133764591 G A ZNF268 Missense_Mutation p.R56H 0.33 tolerated_low_confidence(0.58) benign(0) TCGA-FP-A4BE-01 12 14591099 14591099 G A ATF7IP Silent p.A609A 0.19 TCGA-FP-A4BE-01 12 14613453 14613453 C A ATF7IP Missense_Mutation p.P728H 0.30 deleterious_low_confidence(0) unknown(0) TCGA-FP-A4BE-01 12 15777192 15777192 T C EPS8 Missense_Mutation p.T732A 0.09 tolerated(1) benign(0.001) TCGA-FP-A4BE-01 12 21172239 21172239 A C SLCO1B7 Missense_Mutation p.K48T 0.14 deleterious(0) probably_damaging(0.913) TCGA-FP-A4BE-01 12 24736604 24736604 A G LINC00477 RNA 0.18 TCGA-FP-A4BE-01 12 25054909 25054909 C T BCAT1 Intron 0.28 TCGA-FP-A4BE-01 12 26348818 26348818 C A SSPN Silent p.G71G 0.39 TCGA-FP-A4BE-01 12 27533274 27533274 G A ARNTL2 Missense_Mutation p.A141T 0.31 tolerated(0.11) possibly_damaging(0.525) TCGA-FP-A4BE-01 12 2778099 2778099 C T CACNA1C Missense_Mutation p.R1590C 0.25 deleterious(0) probably_damaging(1) TCGA-FP-A4BE-01 12 32458629 32458629 A G BICD1 Splice_Site p.X194_splice 0.26 TCGA-FP-A4BE-01 12 3392232 3392232 A G TSPAN9 Missense_Mutation p.M224V 0.35 deleterious(0) benign(0.347) TCGA-FP-A4BE-01 12 40758785 40758785 T A LRRK2 Silent p.T2441T 0.15 TCGA-FP-A4BE-01 12 4479465 4479465 C T FGF23 3'UTR 0.27 TCGA-FP-A4BE-01 12 4554481 4554481 G A FGF6 Missense_Mutation p.R86W 0.26 deleterious(0) probably_damaging(0.988) TCGA-FP-A4BE-01 12 45814889 45814889 C T ANO6 Silent p.P772P 0.27 TCGA-FP-A4BE-01 12 46205235 46205235 G - ARID2 Frame_Shift_Del p.E108Rfs*107 0.17 TCGA-FP-A4BE-01 12 47630017 47630017 C T PCED1B Missense_Mutation p.R391W 0.21 tolerated(0.1) benign(0.001) TCGA-FP-A4BE-01 12 48376705 48376705 G A COL2A1 Missense_Mutation p.R707C 0.34 possibly_damaging(0.742) TCGA-FP-A4BE-01 12 4920011 4920011 G A KCNA6 Silent p.T268T 0.33 TCGA-FP-A4BE-01 12 49374348 49374348 G - WNT1 Frame_Shift_Del p.G169Afs*30 0.20 TCGA-FP-A4BE-01 12 50029651 50029651 G A PRPF40B Missense_Mutation p.R434H 0.20 deleterious(0) probably_damaging(0.999) TCGA-FP-A4BE-01 12 50039660 50039660 G A FMNL3 Missense_Mutation p.R1008C 0.33 deleterious(0.01) benign(0.001) TCGA-FP-A4BE-01 12 50185747 50185747 G A NCKAP5L Missense_Mutation p.P1294S 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-FP-A4BE-01 12 50410414 50410414 G A RACGAP1 Nonsense_Mutation p.Q29* 0.27 TCGA-FP-A4BE-01 12 51281020 51281020 C T TMPRSS12 Intron 0.34 TCGA-FP-A4BE-01 12 53091567 53091567 G A KRT77 Silent p.I219I 0.28 TCGA-FP-A4BE-01 12 53874991 53874991 C T MAP3K12 Missense_Mutation p.R885Q 0.27 tolerated_low_confidence(0.19) benign(0) TCGA-FP-A4BE-01 12 54686507 54686507 G A NFE2 Missense_Mutation p.P258L 0.27 deleterious(0.05) probably_damaging(0.946) TCGA-FP-A4BE-01 12 55354987 55354987 T GGG TESPA1 Frame_Shift_Ins p.H511Pfs*74 0.15 TCGA-FP-A4BE-01 12 56579991 56579991 A G SMARCC2 Missense_Mutation p.S89P 0.11 tolerated(0.08) benign(0.014) TCGA-FP-A4BE-01 12 56630975 56630975 C T SLC39A5 Missense_Mutation p.R444W 0.29 tolerated(0.08) probably_damaging(0.912) TCGA-FP-A4BE-01 12 56638205 56638205 G A ANKRD52 Nonsense_Mutation p.R913* 0.24 TCGA-FP-A4BE-01 12 56716461 56716461 G A PAN2 Missense_Mutation p.R863C 0.35 deleterious(0.01) probably_damaging(0.998) TCGA-FP-A4BE-01 12 56847416 56847416 G T MIP Missense_Mutation p.L162M 0.39 deleterious(0) probably_damaging(0.946) TCGA-FP-A4BE-01 12 5687562 5687562 G A ANO2 Missense_Mutation p.R786W 0.26 deleterious(0) probably_damaging(1) TCGA-FP-A4BE-01 12 57843559 57843559 C T INHBC Silent p.Y271Y 0.38 TCGA-FP-A4BE-01 12 57843581 57843581 C T INHBC Nonsense_Mutation p.Q279* 0.35 TCGA-FP-A4BE-01 12 57871381 57871381 G - ARHGAP9 Frame_Shift_Del p.P206Qfs*28 0.20 TCGA-FP-A4BE-01 12 57910662 57910662 C T DDIT3 Missense_Mutation p.R170H 0.34 deleterious(0.03) benign(0.011) TCGA-FP-A4BE-01 12 57919188 57919188 G A MBD6 Missense_Mutation p.R146H 0.34 deleterious_low_confidence(0.01) unknown(0) TCGA-FP-A4BE-01 12 58125741 58125741 C T AGAP2 Missense_Mutation p.G602R 0.14 deleterious(0.01) probably_damaging(1) TCGA-FP-A4BE-01 12 58126199 58126199 G A AGAP2 Missense_Mutation p.P594L 0.44 deleterious(0.01) probably_damaging(0.928) TCGA-FP-A4BE-01 12 64491076 64491076 C T SRGAP1 Silent p.G578G 0.26 TCGA-FP-A4BE-01 12 6637360 6637360 G T NCAPD2 Missense_Mutation p.Q1055H 0.35 tolerated(1) benign(0.001) TCGA-FP-A4BE-01 12 6657677 6657677 G T IFFO1 Missense_Mutation p.L425M 0.28 deleterious(0) probably_damaging(0.999) TCGA-FP-A4BE-01 12 670693 670693 G T B4GALNT3 3'UTR 0.25 TCGA-FP-A4BE-01 12 6806943 6806943 C T PIANP Silent p.L11L 0.50 TCGA-FP-A4BE-01 12 6838466 6838466 G A COPS7A Silent p.Q127Q 0.12 TCGA-FP-A4BE-01 12 70091534 70091534 A - BEST3 Frame_Shift_Del p.F15Lfs*32 0.30 TCGA-FP-A4BE-01 12 70195435 70195435 T C RAB3IP Missense_Mutation p.I371T 0.19 deleterious(0.01) benign(0.24) TCGA-FP-A4BE-01 12 71050530 71050532 CTT - PTPRR In_Frame_Del p.E611del 0.26 TCGA-FP-A4BE-01 12 75804255 75804256 AA - GLIPR1L2 Frame_Shift_Del p.K94Mfs*6 0.20 TCGA-FP-A4BE-01 12 78513274 78513274 G A NAV3 Missense_Mutation p.A1100T 0.30 deleterious(0.03) benign(0.011) TCGA-FP-A4BE-01 12 85255760 85255760 G A SLC6A15 Missense_Mutation p.P615L 0.24 deleterious(0) probably_damaging(1) TCGA-FP-A4BE-01 12 8995814 8995814 T C A2ML1 Missense_Mutation p.F445L 0.25 deleterious(0.05) possibly_damaging(0.817) TCGA-FP-A4BE-01 12 97334215 97334216 TT - NEDD1 Frame_Shift_Del p.L390Ifs*2 0.30 TCGA-FP-A4BE-01 13 108518651 108518651 C T FAM155A Silent p.Q98Q 0.33 TCGA-FP-A4BE-01 13 108863308 108863308 T C LIG4 Silent p.G103G 0.23 TCGA-FP-A4BE-01 13 109779669 109779669 C A MYO16 Missense_Mutation p.S1252R 0.25 deleterious(0.01) possibly_damaging(0.718) TCGA-FP-A4BE-01 13 111132605 111132605 G A COL4A2 Missense_Mutation p.A876T 0.24 benign(0.095) TCGA-FP-A4BE-01 13 20635264 20635264 A - ZMYM2 Frame_Shift_Del p.S939Afs*15 0.25 TCGA-FP-A4BE-01 13 21173662 21173662 G A IFT88 Missense_Mutation p.R266Q 0.25 tolerated(0.1) probably_damaging(0.913) TCGA-FP-A4BE-01 13 21549231 21549231 G A LATS2 Silent p.S1015S 0.32 TCGA-FP-A4BE-01 13 24844901 24844901 C A SPATA13 Intron 0.41 TCGA-FP-A4BE-01 13 25284629 25284629 C T ATP12A Missense_Mutation p.T938M 0.29 deleterious(0.01) possibly_damaging(0.511) TCGA-FP-A4BE-01 13 25486095 25486095 C T CENPJ Missense_Mutation p.C186Y 0.23 tolerated(0.43) benign(0.004) TCGA-FP-A4BE-01 13 27664270 27664270 A - USP12 Frame_Shift_Del p.L200* 0.12 TCGA-FP-A4BE-01 13 28883002 28883002 G A FLT1 Missense_Mutation p.P1233L 0.29 tolerated(0.13) benign(0.009) TCGA-FP-A4BE-01 13 29855976 29855976 C T MTUS2 Missense_Mutation p.A937V 0.28 deleterious(0.01) probably_damaging(0.998) TCGA-FP-A4BE-01 13 31718004 31718004 A G HSPH1 Silent p.D547D 0.30 TCGA-FP-A4BE-01 13 31860901 31860901 C T B3GALTL Missense_Mutation p.R337C 0.22 deleterious(0.05) possibly_damaging(0.717) TCGA-FP-A4BE-01 13 32811593 32811593 C T FRY Missense_Mutation p.P1963L 0.27 deleterious(0.02) benign(0.057) TCGA-FP-A4BE-01 13 37427646 37427646 G A SMAD9 Silent p.F390F 0.35 TCGA-FP-A4BE-01 13 41134135 41134135 A G FOXO1 Missense_Mutation p.M498T 0.32 deleterious(0.04) benign(0.169) TCGA-FP-A4BE-01 13 42142385 42142385 A G VWA8 Missense_Mutation p.I1889T 0.29 deleterious(0) probably_damaging(0.996) TCGA-FP-A4BE-01 13 46559623 46559623 C T ZC3H13 Missense_Mutation p.R510H 0.25 probably_damaging(0.997) TCGA-FP-A4BE-01 13 46616331 46616331 G A ZC3H13 Nonsense_Mutation p.R103* 0.31 TCGA-FP-A4BE-01 13 49772303 49772303 C A FNDC3A Silent p.I892I 0.35 TCGA-FP-A4BE-01 13 52345977 52345977 G T DHRS12 Missense_Mutation p.P229H 0.27 deleterious(0) probably_damaging(0.96) TCGA-FP-A4BE-01 13 52951934 52951934 G T THSD1 Missense_Mutation p.P724H 0.26 tolerated(0.54) benign(0.008) TCGA-FP-A4BE-01 13 58206660 58206660 C - PCDH17 5'UTR 0.19 TCGA-FP-A4BE-01 13 58299228 58299228 G A PCDH17 Missense_Mutation p.D1094N 0.29 tolerated_low_confidence(0.16) benign(0.004) TCGA-FP-A4BE-01 13 73346884 73346884 A - DIS3 Frame_Shift_Del p.S445Hfs*20 0.19 TCGA-FP-A4BE-01 13 88330268 88330268 G A SLITRK5 Silent p.P875P 0.24 TCGA-FP-A4BE-01 13 96293904 96293904 G A DZIP1 Missense_Mutation p.A81V 0.29 deleterious(0) possibly_damaging(0.894) TCGA-FP-A4BE-01 13 96294002 96294002 G - DZIP1 Frame_Shift_Del p.S49Afs*24 0.32 TCGA-FP-A4BE-01 13 98828846 98828846 G A RNF113B Silent p.H215H 0.28 TCGA-FP-A4BE-01 14 100126626 100126626 T C HHIPL1 Missense_Mutation p.L462P 0.23 tolerated(0.09) possibly_damaging(0.859) TCGA-FP-A4BE-01 14 100364621 100364621 C T EML1 Silent p.G312G 0.14 TCGA-FP-A4BE-01 14 100576083 100576083 C T EVL Intron 0.44 TCGA-FP-A4BE-01 14 100795708 100795708 C T SLC25A47 Missense_Mutation p.P218L 0.35 tolerated(0.87) benign(0.001) TCGA-FP-A4BE-01 14 102376002 102376002 C T PPP2R5C Nonsense_Mutation p.Q441* 0.21 TCGA-FP-A4BE-01 14 102442054 102442054 G A DYNC1H1 Missense_Mutation p.V88I 0.27 benign(0.02) TCGA-FP-A4BE-01 14 102505980 102505980 G A DYNC1H1 Silent p.A3867A 0.33 TCGA-FP-A4BE-01 14 103410594 103410594 C T CDC42BPB Missense_Mutation p.V1348M 0.19 tolerated(0.72) benign(0.13) TCGA-FP-A4BE-01 14 103478524 103478524 A G CDC42BPB Silent p.A59A 0.20 TCGA-FP-A4BE-01 14 103596141 103596141 C - TNFAIP2 Frame_Shift_Del p.R311Gfs*18 0.23 TCGA-FP-A4BE-01 14 103986238 103986238 C T CKB Missense_Mutation p.G370D 0.12 deleterious(0) probably_damaging(0.999) TCGA-FP-A4BE-01 14 104123982 104123982 C T KLC1 Missense_Mutation p.R121W 0.29 deleterious(0.02) probably_damaging(1) TCGA-FP-A4BE-01 14 104575600 104575600 G - ASPG Frame_Shift_Del p.A491Pfs*99 0.24 TCGA-FP-A4BE-01 14 104641909 104641909 C T KIF26A Silent p.S928S 0.44 TCGA-FP-A4BE-01 14 105213367 105213367 C A ADSSL1 3'UTR 0.27 TCGA-FP-A4BE-01 14 105353507 105353507 G A CEP170B Silent p.Q977Q 0.35 TCGA-FP-A4BE-01 14 105353894 105353894 G A CEP170B Silent p.P1106P 0.32 TCGA-FP-A4BE-01 14 105397224 105397224 G A PLD4 Missense_Mutation p.R288H 0.25 tolerated(0.06) benign(0.187) TCGA-FP-A4BE-01 14 105518036 105518036 G A GPR132 Silent p.Y146Y 0.30 TCGA-FP-A4BE-01 14 105609430 105609430 G A JAG2 Missense_Mutation p.R1107C 0.28 deleterious(0) probably_damaging(0.997) TCGA-FP-A4BE-01 14 105615281 105615281 G A JAG2 Silent p.C633C 0.17 TCGA-FP-A4BE-01 14 105930455 105930455 G A MTA1 Missense_Mutation p.G388E 0.25 tolerated(0.41) benign(0.287) TCGA-FP-A4BE-01 14 20389294 20389294 T - OR4K5 Frame_Shift_Del p.C179Vfs*20 0.20 TCGA-FP-A4BE-01 14 20389595 20389595 T - OR4K5 Frame_Shift_Del p.F278Sfs*5 0.14 TCGA-FP-A4BE-01 14 20822242 20822242 A G PARP2 Splice_Site p.X214_splice 0.35 TCGA-FP-A4BE-01 14 20854777 20854777 C T TEP1 Missense_Mutation p.R897H 0.30 tolerated(0.09) benign(0.022) TCGA-FP-A4BE-01 14 22217853 22217853 G A TRAV5 Silent p.T68T 0.22 TCGA-FP-A4BE-01 14 22386793 22386793 A G TRAV13-2 Missense_Mutation p.I68V 0.29 deleterious(0.03) benign(0.047) TCGA-FP-A4BE-01 14 23313707 23313709 TCT - MMP14 In_Frame_Del p.F382del 0.37 TCGA-FP-A4BE-01 14 24033844 24033844 C T AP1G2 Missense_Mutation p.R283Q 0.24 deleterious(0.01) benign(0.029) TCGA-FP-A4BE-01 14 24044957 24044957 G A JPH4 Missense_Mutation p.A363V 0.25 deleterious(0) possibly_damaging(0.762) TCGA-FP-A4BE-01 14 24538438 24538438 C T LRRC16B Missense_Mutation p.R1359W 0.18 tolerated_low_confidence(0.06) unknown(0) TCGA-FP-A4BE-01 14 24567463 24567463 G A PCK2 Silent p.T109T 0.32 TCGA-FP-A4BE-01 14 24687272 24687272 C T NEDD8 Intron 0.39 TCGA-FP-A4BE-01 14 24776700 24776700 C T CIDEB Silent p.S21S 0.24 TCGA-FP-A4BE-01 14 24901776 24901776 C A KHNYN Missense_Mutation p.L437I 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-FP-A4BE-01 14 50559327 50559327 T C C14orf183 Missense_Mutation p.D12G 0.22 deleterious_low_confidence(0) possibly_damaging(0.728) TCGA-FP-A4BE-01 14 51561366 51561366 C T TRIM9 Missense_Mutation p.G98S 0.19 tolerated(0.17) possibly_damaging(0.556) TCGA-FP-A4BE-01 14 55510745 55510745 G A SOCS4 Missense_Mutation p.R329H 0.38 deleterious(0) probably_damaging(0.999) TCGA-FP-A4BE-01 14 57938106 57938106 G A C14orf105 Silent p.I286I 0.29 TCGA-FP-A4BE-01 14 60194278 60194278 C T RTN1 Missense_Mutation p.R375Q 0.44 tolerated(0.35) benign(0.013) TCGA-FP-A4BE-01 14 60622863 60622863 C T DHRS7 Silent p.E47E 0.28 TCGA-FP-A4BE-01 14 60938374 60938374 C T C14orf39 Missense_Mutation p.R136H 0.18 tolerated(0.4) benign(0) TCGA-FP-A4BE-01 14 62200988 62200988 T C HIF1A Missense_Mutation p.V362A 0.19 deleterious(0) probably_damaging(0.999) TCGA-FP-A4BE-01 14 64443342 64443342 C A SYNE2 Missense_Mutation p.A397D 0.27 benign(0.028) TCGA-FP-A4BE-01 14 64921543 64921543 G A MTHFD1 Missense_Mutation p.D890N 0.24 deleterious(0.02) probably_damaging(0.999) TCGA-FP-A4BE-01 14 67669864 67669864 C T FAM71D Silent p.T71T 0.29 TCGA-FP-A4BE-01 14 68112428 68112428 C T ARG2 Missense_Mutation p.A144V 0.31 deleterious(0.01) probably_damaging(0.984) TCGA-FP-A4BE-01 14 70991036 70991036 G A ADAM20 Missense_Mutation p.P197S 0.28 deleterious(0) probably_damaging(0.999) TCGA-FP-A4BE-01 14 73989192 73989192 C T HEATR4 Missense_Mutation p.R222H 0.12 tolerated(0.26) benign(0.032) TCGA-FP-A4BE-01 14 74008260 74008260 G A ACOT1 Missense_Mutation p.R174Q 0.21 deleterious(0) probably_damaging(0.99) TCGA-FP-A4BE-01 14 74009815 74009815 T C ACOT1 Missense_Mutation p.M241T 0.26 deleterious(0) benign(0.307) TCGA-FP-A4BE-01 14 75329378 75329378 G A PROX2 Intron 0.37 TCGA-FP-A4BE-01 14 75514604 75514604 T - MLH3 Frame_Shift_Del p.E586Nfs*24 0.49 TCGA-FP-A4BE-01 14 78217748 78217748 T - SNW1 Frame_Shift_Del p.M82Cfs*44 0.21 TCGA-FP-A4BE-01 14 81658960 81658960 G A GTF2A1 Missense_Mutation p.T279I 0.14 deleterious(0.04) probably_damaging(0.992) TCGA-FP-A4BE-01 14 88729604 88729604 G A KCNK10 Missense_Mutation p.A115V 0.27 tolerated(0.22) possibly_damaging(0.526) TCGA-FP-A4BE-01 14 88935293 88935293 C T PTPN21 Silent p.S1121S 0.28 TCGA-FP-A4BE-01 14 92126207 92126207 C T CATSPERB Missense_Mutation p.R469H 0.29 tolerated(0.13) benign(0.001) TCGA-FP-A4BE-01 14 92958534 92958534 C T SLC24A4 Missense_Mutation p.R556W 0.30 deleterious(0) probably_damaging(0.948) TCGA-FP-A4BE-01 14 93762392 93762392 A G BTBD7 Silent p.G2G 0.28 TCGA-FP-A4BE-01 14 94696964 94696964 C T PPP4R4 Missense_Mutation p.A112V 0.29 deleterious(0) probably_damaging(1) TCGA-FP-A4BE-01 14 95884238 95884238 G A SYNE3 Silent p.R951R 0.27 TCGA-FP-A4BE-01 14 96924479 96924479 G A AK7 Silent p.E429E 0.32 TCGA-FP-A4BE-01 14 99640505 99640505 G A BCL11B Nonsense_Mutation p.Q890* 0.36 TCGA-FP-A4BE-01 14 99641398 99641398 G A BCL11B Missense_Mutation p.A592V 0.32 tolerated(0.14) benign(0) TCGA-FP-A4BE-01 14 99641405 99641405 C T BCL11B Missense_Mutation p.E590K 0.26 tolerated(0.17) benign(0.299) TCGA-FP-A4BE-01 14 99641702 99641702 C T BCL11B Missense_Mutation p.G491R 0.25 deleterious(0) probably_damaging(0.924) TCGA-FP-A4BE-01 15 101170038 101170038 G T ASB7 Missense_Mutation p.G203V 0.17 deleterious(0.03) probably_damaging(0.994) TCGA-FP-A4BE-01 15 102296145 102296145 G T DNM1P47 RNA 0.27 TCGA-FP-A4BE-01 15 22848297 22848297 T C TUBGCP5 Missense_Mutation p.V296A 0.29 tolerated(0.1) benign(0.137) TCGA-FP-A4BE-01 15 23049054 23049054 G A NIPA1 Silent p.F255F 0.23 TCGA-FP-A4BE-01 15 23890686 23890686 C T MAGEL2 Missense_Mutation p.R132H 0.29 tolerated_low_confidence(0.05) probably_damaging(0.997) TCGA-FP-A4BE-01 15 25928619 25928619 G A ATP10A Silent p.L1102L 0.23 TCGA-FP-A4BE-01 15 26866506 26866506 C T GABRB3 Missense_Mutation p.R139H 0.25 deleterious(0) probably_damaging(0.957) TCGA-FP-A4BE-01 15 26866602 26866602 G A GABRB3 Missense_Mutation p.T107M 0.23 deleterious(0) probably_damaging(1) TCGA-FP-A4BE-01 15 28359775 28359775 C T HERC2 Silent p.R4632R 0.28 TCGA-FP-A4BE-01 15 28386775 28386775 G A HERC2 Nonsense_Mutation p.R3940* 0.26 TCGA-FP-A4BE-01 15 31320618 31320618 G A TRPM1 Silent p.G1087G 0.22 TCGA-FP-A4BE-01 15 31341635 31341635 G A TRPM1 Silent p.N522N 0.34 TCGA-FP-A4BE-01 15 33954431 33954431 C T RYR3 Missense_Mutation p.A1567V 0.37 possibly_damaging(0.471) TCGA-FP-A4BE-01 15 34634068 34634068 A G NOP10 3'UTR 0.19 TCGA-FP-A4BE-01 15 35185902 35185902 G A AQR Missense_Mutation p.P845S 0.17 deleterious(0) probably_damaging(0.974) TCGA-FP-A4BE-01 15 35202356 35202356 T C AQR Missense_Mutation p.H548R 0.24 tolerated(0.1) benign(0.036) TCGA-FP-A4BE-01 15 40659625 40659625 C T DISP2 Missense_Mutation p.L438F 0.13 deleterious(0.01) probably_damaging(0.94) TCGA-FP-A4BE-01 15 40675100 40675100 T A KNSTRN Missense_Mutation p.C22S 0.23 tolerated_low_confidence(0.72) benign(0.001) TCGA-FP-A4BE-01 15 40756212 40756212 C T BAHD1 Silent p.P656P 0.24 TCGA-FP-A4BE-01 15 41068766 41068766 G A DNAJC17 Missense_Mutation p.R119W 0.28 deleterious(0.04) benign(0.006) TCGA-FP-A4BE-01 15 41247907 41247907 G A CHAC1 Missense_Mutation p.V244M 0.25 tolerated(0.07) probably_damaging(0.974) TCGA-FP-A4BE-01 15 41388423 41388423 A C INO80 Missense_Mutation p.L29R 0.19 deleterious(0) probably_damaging(0.999) TCGA-FP-A4BE-01 15 42005475 42005475 T C MGA Missense_Mutation p.C1071R 0.29 deleterious(0) probably_damaging(0.999) TCGA-FP-A4BE-01 15 42067510 42067510 A G MAPKBP1 Missense_Mutation p.K13E 0.11 deleterious(0) possibly_damaging(0.87) TCGA-FP-A4BE-01 15 42178461 42178461 G A SPTBN5 Missense_Mutation p.A331V 0.58 benign(0.091) TCGA-FP-A4BE-01 15 45007871 45007872 TT - B2M Frame_Shift_Del p.L107Vfs*7 0.37 TCGA-FP-A4BE-01 15 48435037 48435038 - A MYEF2 3'UTR 0.50 TCGA-FP-A4BE-01 15 52497137 52497139 AAG - MYO5C In_Frame_Del p.F1581del 0.52 TCGA-FP-A4BE-01 15 59181732 59181732 G A SLTM Missense_Mutation p.R701W 0.67 deleterious(0) unknown(0) TCGA-FP-A4BE-01 15 63097974 63097974 C T TLN2 Missense_Mutation p.T2218M 0.25 tolerated(0.11) benign(0.302) TCGA-FP-A4BE-01 15 64446653 64446653 T C SNX22 Silent p.D176D 0.61 TCGA-FP-A4BE-01 15 64508804 64508804 C T CSNK1G1 Missense_Mutation p.R134Q 0.56 deleterious(0) possibly_damaging(0.891) TCGA-FP-A4BE-01 15 65347485 65347485 G A RASL12 Missense_Mutation p.R185W 0.58 deleterious(0.03) benign(0.143) TCGA-FP-A4BE-01 15 65445919 65445919 C T CLPX Missense_Mutation p.R557Q 0.62 tolerated(0.05) benign(0.384) TCGA-FP-A4BE-01 15 65559077 65559077 A G PARP16 Silent p.A114A 0.26 TCGA-FP-A4BE-01 15 65917564 65917564 G A SLC24A1 Silent p.T382T 0.64 TCGA-FP-A4BE-01 15 74177418 74177419 - T TBC1D21 Frame_Shift_Ins p.Q187Pfs*37 0.36 TCGA-FP-A4BE-01 15 75499165 75499165 C A C15orf39 Missense_Mutation p.P259Q 0.44 deleterious(0.01) possibly_damaging(0.904) TCGA-FP-A4BE-01 15 75646105 75646105 C T NEIL1 Silent p.S248S 0.65 TCGA-FP-A4BE-01 15 76170361 76170364 AAGT - UBE2Q2 Splice_Site p.X245_splice 0.71 TCGA-FP-A4BE-01 15 79320163 79320163 C T RASGRF1 Missense_Mutation p.R434Q 0.50 deleterious(0) probably_damaging(0.994) TCGA-FP-A4BE-01 15 83932512 83932512 C T BNC1 Silent p.T497T 0.56 TCGA-FP-A4BE-01 15 90611773 90611773 C T ZNF710 Silent p.C468C 0.56 TCGA-FP-A4BE-01 15 90903589 90903589 G A ZNF774 Missense_Mutation p.E176K 0.27 deleterious(0.04) probably_damaging(0.996) TCGA-FP-A4BE-01 15 92459421 92459421 G A SLCO3A1 Missense_Mutation p.E127K 0.20 deleterious(0.03) probably_damaging(0.998) TCGA-FP-A4BE-01 15 94841701 94841701 C T MCTP2 Silent p.S69S 0.43 TCGA-FP-A4BE-01 16 11001726 11001726 C A CIITA Missense_Mutation p.L793M 0.11 deleterious(0.01) probably_damaging(0.996) TCGA-FP-A4BE-01 16 11852428 11852428 A C ZC3H7A Intron 0.31 TCGA-FP-A4BE-01 16 12121270 12121270 G A SNX29 Silent p.Q72Q 0.26 TCGA-FP-A4BE-01 16 1246017 1246017 G A CACNA1H Missense_Mutation p.V213M 0.41 deleterious(0.02) probably_damaging(0.999) TCGA-FP-A4BE-01 16 1270477 1270477 G A CACNA1H Missense_Mutation p.R2182H 0.31 tolerated(0.09) probably_damaging(0.996) TCGA-FP-A4BE-01 16 1292134 1292134 G A TPSAB1 Missense_Mutation p.V241M 0.20 deleterious(0) probably_damaging(0.994) TCGA-FP-A4BE-01 16 15129899 15129899 C T PDXDC1 Nonsense_Mutation p.R712* 0.22 TCGA-FP-A4BE-01 16 1537733 1537733 A C PTX4 Missense_Mutation p.L122R 0.31 tolerated(0.53) benign(0.015) TCGA-FP-A4BE-01 16 1719026 1719026 C T CRAMP1L Missense_Mutation p.A1120V 0.32 tolerated(0.11) probably_damaging(0.996) TCGA-FP-A4BE-01 16 19548310 19548310 T C CCP110 Missense_Mutation p.V440A 0.25 tolerated(0.14) benign(0.003) TCGA-FP-A4BE-01 16 1962127 1962127 G - HS3ST6 Frame_Shift_Del p.R134Afs*12 0.32 TCGA-FP-A4BE-01 16 20448594 20448594 C T ACSM5 Missense_Mutation p.R481W 0.25 deleterious(0) probably_damaging(0.996) TCGA-FP-A4BE-01 16 2048830 2048830 C T ZNF598 Missense_Mutation p.R745Q 0.33 benign(0.016) TCGA-FP-A4BE-01 16 20811677 20811679 GCT - ERI2 In_Frame_Del p.Q169del 0.23 TCGA-FP-A4BE-01 16 22142599 22142599 C T VWA3A Missense_Mutation p.R576W 0.27 deleterious(0.01) benign(0.117) TCGA-FP-A4BE-01 16 22262606 22262606 G - EEF2K Frame_Shift_Del p.E196Rfs*22 0.22 TCGA-FP-A4BE-01 16 2226308 2226308 C T TRAF7 Missense_Mutation p.R641C 0.33 deleterious(0) probably_damaging(0.933) TCGA-FP-A4BE-01 16 2290126 2290126 T C ECI1 Missense_Mutation p.K255E 0.37 deleterious(0) probably_damaging(1) TCGA-FP-A4BE-01 16 24835045 24835045 G A TNRC6A Missense_Mutation p.D1936N 0.25 deleterious(0) possibly_damaging(0.797) TCGA-FP-A4BE-01 16 2514178 2514178 C T C16orf59 Missense_Mutation p.A368V 0.41 tolerated(0.06) probably_damaging(0.974) TCGA-FP-A4BE-01 16 2514295 2514295 G T C16orf59 Intron 0.36 TCGA-FP-A4BE-01 16 2580384 2580384 C T CEMP1 Missense_Mutation p.V231M 0.32 deleterious_low_confidence(0) possibly_damaging(0.781) TCGA-FP-A4BE-01 16 2811955 2811955 A G SRRM2 Missense_Mutation p.T476A 0.30 unknown(0) TCGA-FP-A4BE-01 16 28145181 28145181 G A XPO6 Missense_Mutation p.T506M 0.32 tolerated(0.24) benign(0.033) TCGA-FP-A4BE-01 16 28617172 28617172 G A SULT1A1 Silent p.G286G 0.21 TCGA-FP-A4BE-01 16 28877882 28877882 G A SH2B1 Missense_Mutation p.R156H 0.34 deleterious(0.01) benign(0.021) TCGA-FP-A4BE-01 16 2905667 2905667 C T PRSS22 Missense_Mutation p.R156Q 0.25 tolerated(0.21) probably_damaging(0.945) TCGA-FP-A4BE-01 16 29821017 29821017 C - MAZ Frame_Shift_Del p.P481Lfs*44 0.29 TCGA-FP-A4BE-01 16 29828529 29828529 A G PAGR1 Splice_Site p.X161_splice 0.24 TCGA-FP-A4BE-01 16 29922431 29922431 G A KCTD13 Silent p.H207H 0.32 TCGA-FP-A4BE-01 16 3016647 3016647 C T KREMEN2 Missense_Mutation p.A164V 0.23 deleterious(0) probably_damaging(0.993) TCGA-FP-A4BE-01 16 30536461 30536461 G A ZNF768 Missense_Mutation p.R334C 0.28 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-FP-A4BE-01 16 30750563 30750563 C T SRCAP Missense_Mutation p.R3068C 0.31 unknown(0) TCGA-FP-A4BE-01 16 3079314 3079316 CTC - CCDC64B In_Frame_Del p.E358del 0.35 TCGA-FP-A4BE-01 16 30794300 30794300 C T ZNF629 Missense_Mutation p.R450H 0.30 deleterious(0) probably_damaging(1) TCGA-FP-A4BE-01 16 30976237 30976237 C - SETD1A Frame_Shift_Del p.P393Lfs*104 0.25 TCGA-FP-A4BE-01 16 30977324 30977324 G A SETD1A Missense_Mutation p.G708S 0.33 benign(0.01) TCGA-FP-A4BE-01 16 31073511 31073511 G A ZNF668 Silent p.H269H 0.35 TCGA-FP-A4BE-01 16 31120841 31120841 C T BCKDK Missense_Mutation p.R69C 0.25 deleterious(0.02) probably_damaging(0.999) TCGA-FP-A4BE-01 16 31336583 31336583 G A ITGAM Splice_Site p.X789_splice 0.25 TCGA-FP-A4BE-01 16 332296 332296 G - ARHGDIG Splice_Site p.X114_splice 0.22 TCGA-FP-A4BE-01 16 3544827 3544828 - G C16orf90 Frame_Shift_Ins p.N33Qfs*48 0.17 TCGA-FP-A4BE-01 16 3576427 3576427 C A CLUAP1 Missense_Mutation p.L291I 0.19 tolerated(0.06) possibly_damaging(0.701) TCGA-FP-A4BE-01 16 3614281 3614281 G A NLRC3 Silent p.D266D 0.27 TCGA-FP-A4BE-01 16 3639090 3639090 C - SLX4 Frame_Shift_Del p.E1517Kfs*26 0.22 TCGA-FP-A4BE-01 16 3778018 3778018 G A CREBBP Missense_Mutation p.R2344W 0.09 unknown(0) TCGA-FP-A4BE-01 16 4165251 4165251 G A ADCY9 Missense_Mutation p.R65W 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.462) TCGA-FP-A4BE-01 16 4902935 4902935 G T UBN1 Missense_Mutation p.R6M 0.21 deleterious(0) probably_damaging(0.99) TCGA-FP-A4BE-01 16 4920893 4920893 G A UBN1 Silent p.S493S 0.09 TCGA-FP-A4BE-01 16 4944618 4944618 C T PPL Missense_Mutation p.G415D 0.28 tolerated(0.07) probably_damaging(0.955) TCGA-FP-A4BE-01 16 51171062 51171062 G A SALL1 Silent p.T1312T 0.31 TCGA-FP-A4BE-01 16 55517983 55517983 C T MMP2 Missense_Mutation p.R146C 0.19 deleterious(0) probably_damaging(0.996) TCGA-FP-A4BE-01 16 55690841 55690841 G A SLC6A2 Missense_Mutation p.V79M 0.30 deleterious(0) probably_damaging(1) TCGA-FP-A4BE-01 16 55903559 55903559 A G CES5A Missense_Mutation p.V201A 0.25 tolerated(0.13) benign(0.005) TCGA-FP-A4BE-01 16 56920301 56920301 C - SLC12A3 Frame_Shift_Del p.N653Tfs*19 0.25 TCGA-FP-A4BE-01 16 57789829 57789829 C T KATNB1 Missense_Mutation p.A548V 0.19 tolerated(0.06) benign(0.394) TCGA-FP-A4BE-01 16 58327706 58327706 C T PRSS54 Silent p.A5A 0.45 TCGA-FP-A4BE-01 16 597591 597592 - C CAPN15 Frame_Shift_Ins p.Q254Pfs*8 0.32 TCGA-FP-A4BE-01 16 61747860 61747860 G T CDH8 Silent p.V513V 0.32 TCGA-FP-A4BE-01 16 624377 624377 C T PIGQ Silent p.G101G 0.33 TCGA-FP-A4BE-01 16 628448 628448 C T PIGQ Missense_Mutation p.R338C 0.13 deleterious(0.02) probably_damaging(0.935) TCGA-FP-A4BE-01 16 65005505 65005505 T A CDH11 Missense_Mutation p.N540I 0.38 deleterious(0) benign(0.035) TCGA-FP-A4BE-01 16 67180988 67180989 - C C16orf70 Frame_Shift_Ins p.R411Qfs*4 0.33 TCGA-FP-A4BE-01 16 67410687 67410687 G A LRRC36 Missense_Mutation p.C573Y 0.33 tolerated(0.12) benign(0.008) TCGA-FP-A4BE-01 16 67469997 67469997 C T HSD11B2 Silent p.L206L 0.30 TCGA-FP-A4BE-01 16 68293592 68293592 C T PLA2G15 3'UTR 0.26 TCGA-FP-A4BE-01 16 682937 682937 G A WFIKKN1 Missense_Mutation p.R176H 0.42 tolerated(0.77) benign(0.004) TCGA-FP-A4BE-01 16 69352776 69352776 C T VPS4A Silent p.L132L 0.32 TCGA-FP-A4BE-01 16 70404246 70404246 G T DDX19A Missense_Mutation p.G381C 0.35 deleterious(0) probably_damaging(0.976) TCGA-FP-A4BE-01 16 70497629 70497629 C T FUK Silent p.N62N 0.33 TCGA-FP-A4BE-01 16 71483562 71483562 A - ZNF23 Frame_Shift_Del p.F122Lfs*35 0.25 TCGA-FP-A4BE-01 16 71668305 71668305 A G MARVELD3 Intron 0.06 TCGA-FP-A4BE-01 16 74950079 74950079 G T WDR59 Missense_Mutation p.L349M 0.23 deleterious(0.04) possibly_damaging(0.794) TCGA-FP-A4BE-01 16 74976652 74976652 C A WDR59 Missense_Mutation p.R173L 0.20 deleterious(0) probably_damaging(0.99) TCGA-FP-A4BE-01 16 74990459 74990459 G A WDR59 Nonsense_Mutation p.R52* 0.31 TCGA-FP-A4BE-01 16 75512692 75512692 C T CHST6 Silent p.V345V 0.27 TCGA-FP-A4BE-01 16 75512840 75512840 G A CHST6 Missense_Mutation p.T296M 0.28 deleterious(0.02) probably_damaging(0.934) TCGA-FP-A4BE-01 16 75634173 75634173 G A ADAT1 Missense_Mutation p.R484W 0.68 deleterious(0) probably_damaging(0.991) TCGA-FP-A4BE-01 16 77356310 77356311 - A ADAMTS18 Frame_Shift_Ins p.A696Cfs*18 0.30 TCGA-FP-A4BE-01 16 77775744 77775744 A - NUDT7 Frame_Shift_Del p.K207Nfs*14 0.35 TCGA-FP-A4BE-01 16 81399002 81399002 G T GAN Missense_Mutation p.G474V 0.26 deleterious(0) probably_damaging(0.998) TCGA-FP-A4BE-01 16 81730263 81730263 C T CMIP Silent p.F543F 0.31 TCGA-FP-A4BE-01 16 83378554 83378554 C T CDH13 Nonsense_Mutation p.R289* 0.27 TCGA-FP-A4BE-01 16 84214972 84214972 C T TAF1C Missense_Mutation p.V402M 0.33 deleterious(0.01) probably_damaging(0.927) TCGA-FP-A4BE-01 16 857486 857486 G A PRR25 Silent p.P161P 0.38 TCGA-FP-A4BE-01 16 85839440 85839440 G A COX4I1 Missense_Mutation p.A115T 0.25 tolerated(0.06) benign(0.375) TCGA-FP-A4BE-01 16 88643735 88643735 C T ZC3H18 Silent p.D68D 0.30 TCGA-FP-A4BE-01 16 88694459 88694459 C - ZC3H18 Frame_Shift_Del p.Q804Sfs*15 0.27 TCGA-FP-A4BE-01 16 88874603 88874603 T C CDT1 Missense_Mutation p.Y520H 0.39 deleterious(0) probably_damaging(0.999) TCGA-FP-A4BE-01 16 89348966 89348966 T C ANKRD11 Silent p.P1328P 0.38 TCGA-FP-A4BE-01 16 8988640 8988640 C T USP7 Splice_Site p.X1037_splice 0.27 TCGA-FP-A4BE-01 16 90023996 90023996 C T DEF8 Silent p.P161P 0.50 TCGA-FP-A4BE-01 17 10354694 10354694 G A MYH4 Missense_Mutation p.R1272C 0.35 deleterious(0) probably_damaging(0.988) TCGA-FP-A4BE-01 17 10429051 10429051 C T MYH2 Missense_Mutation p.A1444T 0.22 deleterious(0.03) benign(0.178) TCGA-FP-A4BE-01 17 10608783 10608783 C T ADPRM Silent p.Y180Y 0.08 TCGA-FP-A4BE-01 17 11757608 11757608 T C DNAH9 Missense_Mutation p.C3266R 0.16 probably_damaging(0.996) TCGA-FP-A4BE-01 17 1538254 1538254 C A SCARF1 Missense_Mutation p.G764V 0.39 tolerated(0.05) possibly_damaging(0.448) TCGA-FP-A4BE-01 17 1538786 1538786 G A SCARF1 Missense_Mutation p.R587W 0.22 deleterious(0) probably_damaging(1) TCGA-FP-A4BE-01 17 15406410 15406410 A G TVP23C Missense_Mutation p.V200A 0.29 tolerated(0.41) benign(0.008) TCGA-FP-A4BE-01 17 16221134 16221134 A G PIGL Missense_Mutation p.Y191C 0.15 deleterious(0) probably_damaging(1) TCGA-FP-A4BE-01 17 16703435 16703435 G T CCDC144A 3'UTR 0.26 TCGA-FP-A4BE-01 17 19290368 19290370 CTC - MFAP4 In_Frame_Del p.G21del 0.50 TCGA-FP-A4BE-01 17 19746443 19746443 T C ULK2 Silent p.P212P 0.29 TCGA-FP-A4BE-01 17 2203202 2203202 C T SMG6 Missense_Mutation p.R282Q 0.28 tolerated_low_confidence(0.23) possibly_damaging(0.83) TCGA-FP-A4BE-01 17 2579802 2579802 A - PAFAH1B1 Frame_Shift_Del p.S304Vfs*29 0.24 TCGA-FP-A4BE-01 17 2603969 2603969 C T CLUH Intron 0.33 TCGA-FP-A4BE-01 17 26696773 26696773 C - VTN Frame_Shift_Del p.G95Afs*4 0.28 TCGA-FP-A4BE-01 17 27028130 27028130 C T SUPT6H Missense_Mutation p.R1660W 0.30 tolerated(0.1) possibly_damaging(0.781) TCGA-FP-A4BE-01 17 27043058 27043058 G T RAB34 Silent p.V112V 0.21 TCGA-FP-A4BE-01 17 27071213 27071213 C A TRAF4 Missense_Mutation p.P28H 0.30 deleterious(0) probably_damaging(0.995) TCGA-FP-A4BE-01 17 27935104 27935104 C T ANKRD13B Silent p.P117P 0.38 TCGA-FP-A4BE-01 17 28537665 28537665 C T SLC6A4 Splice_Site p.X440_splice 0.32 TCGA-FP-A4BE-01 17 29855737 29855737 G A RAB11FIP4 Missense_Mutation p.E532K 0.19 deleterious(0) probably_damaging(0.95) TCGA-FP-A4BE-01 17 30660531 30660531 G A C17orf75 Missense_Mutation p.R294W 0.32 tolerated(0.08) benign(0.04) TCGA-FP-A4BE-01 17 30781528 30781528 T C PSMD11 Missense_Mutation p.L70P 0.34 deleterious(0) possibly_damaging(0.781) TCGA-FP-A4BE-01 17 3336411 3336411 C T OR1E2 Missense_Mutation p.G242D 0.33 deleterious(0.01) benign(0.236) TCGA-FP-A4BE-01 17 33954503 33954503 A C AP2B1 Silent p.A346A 0.28 TCGA-FP-A4BE-01 17 3563763 3563763 G T CTNS Intron 0.24 TCGA-FP-A4BE-01 17 3593950 3593950 A G P2RX5 Missense_Mutation p.C129R 0.24 deleterious(0) probably_damaging(0.998) TCGA-FP-A4BE-01 17 36872835 36872835 C T MLLT6 Missense_Mutation p.R418W 0.25 deleterious(0) unknown(0) TCGA-FP-A4BE-01 17 36876066 36876066 C T MLLT6 Silent p.G691G 0.41 TCGA-FP-A4BE-01 17 37009975 37009976 - A RPL23 5'UTR 0.27 TCGA-FP-A4BE-01 17 3725318 3725318 T G C17orf85 Missense_Mutation p.R275S 0.30 deleterious(0.03) benign(0.006) TCGA-FP-A4BE-01 17 37665993 37665993 G A CDK12 Missense_Mutation p.R882Q 0.23 probably_damaging(0.997) TCGA-FP-A4BE-01 17 38244504 38244504 G A THRA Missense_Mutation p.E245K 0.30 deleterious(0.05) benign(0.244) TCGA-FP-A4BE-01 17 38244663 38244663 G A THRA Missense_Mutation p.A298T 0.33 tolerated(0.3) possibly_damaging(0.901) TCGA-FP-A4BE-01 17 38245659 38245659 G A THRA Intron 0.29 TCGA-FP-A4BE-01 17 3828649 3828649 C T ATP2A3 3'UTR 0.18 TCGA-FP-A4BE-01 17 39383272 39383272 C - KRTAP9-2 Frame_Shift_Del p.T124Rfs*9 0.16 TCGA-FP-A4BE-01 17 39471892 39471892 C T KRTAP17-1 Missense_Mutation p.C4Y 0.42 unknown(0) TCGA-FP-A4BE-01 17 39521129 39521129 C T KRT33B Silent p.E333E 0.45 TCGA-FP-A4BE-01 17 39564821 39564821 C T AC003958.2 RNA 0.31 TCGA-FP-A4BE-01 17 40315704 40315704 G - KCNH4 Frame_Shift_Del p.R800Gfs*28 0.30 TCGA-FP-A4BE-01 17 40725023 40725023 G A PSMC3IP Missense_Mutation p.T206M 0.30 deleterious(0.03) possibly_damaging(0.908) TCGA-FP-A4BE-01 17 40928276 40928276 G A VPS25 Missense_Mutation p.G119D 0.08 deleterious(0) probably_damaging(0.982) TCGA-FP-A4BE-01 17 41003711 41003711 C - AOC3 Frame_Shift_Del p.P119Hfs*20 0.19 TCGA-FP-A4BE-01 17 42274612 42274612 G A ATXN7L3 Nonsense_Mutation p.R114* 0.37 TCGA-FP-A4BE-01 17 42961083 42961083 C T EFTUD2 Silent p.A120A 0.26 TCGA-FP-A4BE-01 17 43003848 43003848 G A KIF18B Missense_Mutation p.R796C 0.33 deleterious(0.03) benign(0.077) TCGA-FP-A4BE-01 17 43506805 43506805 G T ARHGAP27 5'Flank 0.32 TCGA-FP-A4BE-01 17 4391154 4391154 C T SPNS3 Missense_Mutation p.L502F 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.807) TCGA-FP-A4BE-01 17 43922639 43922639 C T SPPL2C Missense_Mutation p.R123W 0.27 deleterious(0) probably_damaging(0.984) TCGA-FP-A4BE-01 17 44061000 44061000 C T MAPT Missense_Mutation p.T277I 0.31 tolerated(0.08) benign(0.376) TCGA-FP-A4BE-01 17 45663060 45663060 G A NPEPPS Silent p.A281A 0.31 TCGA-FP-A4BE-01 17 4575196 4575196 C T PELP1 Silent p.A1030A 0.38 TCGA-FP-A4BE-01 17 4621918 4621918 G A ARRB2 Missense_Mutation p.A261T 0.30 tolerated(0.43) probably_damaging(0.996) TCGA-FP-A4BE-01 17 46973104 46973104 C T ATP5G1 Silent p.V128V 0.25 TCGA-FP-A4BE-01 17 47656007 47656007 G A NXPH3 Missense_Mutation p.R35H 0.27 tolerated(0.35) benign(0) TCGA-FP-A4BE-01 17 47788784 47788784 G A FAM117A Missense_Mutation p.R399C 0.27 deleterious(0) probably_damaging(0.999) TCGA-FP-A4BE-01 17 48265471 48265471 C T COL1A1 Missense_Mutation p.A1083T 0.36 unknown(0) TCGA-FP-A4BE-01 17 4840888 4840888 G - SLC25A11 3'UTR 0.53 TCGA-FP-A4BE-01 17 48653059 48653059 C A CACNA1G Nonsense_Mutation p.C432* 0.41 TCGA-FP-A4BE-01 17 48940335 48940335 T - TOB1 3'UTR 0.23 TCGA-FP-A4BE-01 17 55962594 55962594 G - CUEDC1 Frame_Shift_Del p.P111Rfs*136 0.21 TCGA-FP-A4BE-01 17 58260552 58260552 C A USP32 Missense_Mutation p.S1366I 0.26 tolerated_low_confidence(0.11) possibly_damaging(0.567) TCGA-FP-A4BE-01 17 58260568 58260568 T G USP32 Missense_Mutation p.S1361R 0.28 tolerated_low_confidence(0.15) probably_damaging(0.99) TCGA-FP-A4BE-01 17 6013000 6013000 A G WSCD1 Missense_Mutation p.D308G 0.33 tolerated(0.07) benign(0.008) TCGA-FP-A4BE-01 17 60759668 60759668 C T MRC2 Missense_Mutation p.T959M 0.25 tolerated(0.16) benign(0.004) TCGA-FP-A4BE-01 17 60765721 60765721 G A MRC2 Silent p.Q1006Q 0.22 TCGA-FP-A4BE-01 17 61498413 61498413 A T TANC2 Silent p.G1690G 0.32 TCGA-FP-A4BE-01 17 61568704 61568704 C T ACE Silent p.H958H 0.29 TCGA-FP-A4BE-01 17 61788155 61788155 G A STRADA Silent p.I130I 0.21 TCGA-FP-A4BE-01 17 61988187 61988187 A - CSHL1 Frame_Shift_Del p.F36Lfs*23 0.26 TCGA-FP-A4BE-01 17 61995389 61995389 T C GH1 Silent p.T93T 0.36 TCGA-FP-A4BE-01 17 61995399 61995399 C A GH1 Missense_Mutation p.R90M 0.36 tolerated(0.13) benign(0.037) TCGA-FP-A4BE-01 17 62022785 62022785 G A SCN4A Missense_Mutation p.R1219C 0.32 deleterious(0.03) probably_damaging(0.996) TCGA-FP-A4BE-01 17 62049185 62049185 A C SCN4A Missense_Mutation p.F170V 0.28 deleterious(0.02) benign(0.015) TCGA-FP-A4BE-01 17 64171304 64171304 G A CEP112 Nonsense_Mutation p.R110* 0.28 TCGA-FP-A4BE-01 17 66250543 66250543 A G AMZ2 Splice_Site p.X196_splice 0.28 TCGA-FP-A4BE-01 17 6943299 6943299 C T SLC16A13 3'UTR 0.31 TCGA-FP-A4BE-01 17 7129221 7129221 A G DVL2 Missense_Mutation p.M725T 0.30 deleterious(0) benign(0.149) TCGA-FP-A4BE-01 17 72366673 72366673 A G GPR142 Silent p.R124R 0.11 TCGA-FP-A4BE-01 17 7329675 7329675 G A C17orf74 Missense_Mutation p.R122H 0.32 tolerated(0.26) probably_damaging(0.923) TCGA-FP-A4BE-01 17 73488759 73488759 C T KIAA0195 Missense_Mutation p.R601C 0.24 deleterious(0) possibly_damaging(0.836) TCGA-FP-A4BE-01 17 73736900 73736900 C T ITGB4 Silent p.S859S 0.31 TCGA-FP-A4BE-01 17 73759466 73759466 C - GALK1 Frame_Shift_Del p.G137Vfs*27 0.37 TCGA-FP-A4BE-01 17 73814802 73814802 C - UNK Frame_Shift_Del p.P486Lfs*12 0.17 TCGA-FP-A4BE-01 17 73819405 73819405 C T UNK Silent p.G693G 0.37 TCGA-FP-A4BE-01 17 73820394 73820394 C T UNK Missense_Mutation p.R777W 0.12 deleterious(0) probably_damaging(0.995) TCGA-FP-A4BE-01 17 7399840 7399840 A G POLR2A Missense_Mutation p.K149E 0.33 possibly_damaging(0.904) TCGA-FP-A4BE-01 17 74005777 74005777 G A EVPL Missense_Mutation p.A1170V 0.28 tolerated(0.18) benign(0.26) TCGA-FP-A4BE-01 17 7416809 7416809 A G POLR2A Silent p.S1742S 0.30 TCGA-FP-A4BE-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.39 deleterious(0) probably_damaging(0.998) TCGA-FP-A4BE-01 17 7578457 7578457 C T TP53 Missense_Mutation p.R158H 0.31 tolerated(0.1) benign(0.438) TCGA-FP-A4BE-01 17 76071268 76071268 C T TNRC6C Missense_Mutation p.T987I 0.32 deleterious(0) benign(0.171) TCGA-FP-A4BE-01 17 76122698 76122698 C T TMC6 Missense_Mutation p.V30M 0.39 deleterious(0.03) benign(0.285) TCGA-FP-A4BE-01 17 76497387 76497387 G A DNAH17 Missense_Mutation p.R1774W 0.26 probably_damaging(1) TCGA-FP-A4BE-01 17 77758364 77758364 C T CBX2 Silent p.H374H 0.33 TCGA-FP-A4BE-01 17 78172264 78172264 G - CARD14 Frame_Shift_Del p.D577Mfs*40 0.23 TCGA-FP-A4BE-01 17 78185909 78185909 G A SGSH Missense_Mutation p.R304C 0.30 deleterious(0) probably_damaging(0.999) TCGA-FP-A4BE-01 17 78320821 78320821 C T RNF213 Missense_Mutation p.R2896W 0.21 probably_damaging(1) TCGA-FP-A4BE-01 17 7907207 7907207 C T GUCY2D Silent p.G253G 0.30 TCGA-FP-A4BE-01 17 79093370 79093370 G A AATK Silent p.F1298F 0.26 TCGA-FP-A4BE-01 17 79203128 79203128 G T ENTHD2 Missense_Mutation p.P393H 0.36 deleterious(0) probably_damaging(0.999) TCGA-FP-A4BE-01 17 79514613 79514613 T C C17orf70 Missense_Mutation p.S499G 0.33 tolerated(0.33) benign(0.013) TCGA-FP-A4BE-01 17 79668136 79668136 C T HGS Missense_Mutation p.A733V 0.22 tolerated(0.15) benign(0.01) TCGA-FP-A4BE-01 17 79683871 79683871 G A SLC25A10 Missense_Mutation p.R150H 0.27 deleterious(0.01) probably_damaging(0.989) TCGA-FP-A4BE-01 17 79803764 79803764 T - P4HB Frame_Shift_Del p.N387Tfs*118 0.26 TCGA-FP-A4BE-01 17 80684412 80684412 C A FN3KRP Silent p.P175P 0.33 TCGA-FP-A4BE-01 17 8092761 8092761 G A C17orf59 Missense_Mutation p.P233L 0.14 tolerated(0.09) possibly_damaging(0.783) TCGA-FP-A4BE-01 17 8168254 8168254 C T PFAS Silent p.C697C 0.25 TCGA-FP-A4BE-01 17 9546632 9546632 T - WDR16 3'UTR 0.33 TCGA-FP-A4BE-01 18 11881066 11881066 C T GNAL Missense_Mutation p.R437C 0.28 deleterious(0) probably_damaging(0.999) TCGA-FP-A4BE-01 18 12506498 12506498 C A SPIRE1 Missense_Mutation p.R317I 0.35 deleterious(0.01) possibly_damaging(0.676) TCGA-FP-A4BE-01 18 13666626 13666626 C T FAM210A Silent p.T224T 0.08 TCGA-FP-A4BE-01 18 18619431 18619431 A G ROCK1 Splice_Site p.X351_splice 0.32 TCGA-FP-A4BE-01 18 21402305 21402305 A G LAMA3 Silent p.A798A 0.24 TCGA-FP-A4BE-01 18 22805769 22805769 A G ZNF521 Missense_Mutation p.S705P 0.10 deleterious(0.02) probably_damaging(0.999) TCGA-FP-A4BE-01 18 2547407 2547407 C A METTL4 Nonsense_Mutation p.E341* 0.28 TCGA-FP-A4BE-01 18 29848392 29848392 G A GAREM Silent p.S691S 0.30 TCGA-FP-A4BE-01 18 30091782 30091782 T - WBP11P1 RNA 0.32 TCGA-FP-A4BE-01 18 3155028 3155028 C A MYOM1 Missense_Mutation p.E520D 0.36 tolerated(1) benign(0.002) TCGA-FP-A4BE-01 18 3452101 3452101 T - TGIF1 Frame_Shift_Del p.S43Pfs*91 0.25 TCGA-FP-A4BE-01 18 3742432 3742432 C T DLGAP1 Missense_Mutation p.R418Q 0.36 deleterious(0.03) possibly_damaging(0.826) TCGA-FP-A4BE-01 18 43418992 43418992 G A SIGLEC15 Missense_Mutation p.G269D 0.19 tolerated(0.1) possibly_damaging(0.652) TCGA-FP-A4BE-01 18 44601709 44601709 C T KATNAL2 Missense_Mutation p.S285L 0.36 deleterious(0) probably_damaging(0.958) TCGA-FP-A4BE-01 18 54424333 54424333 C A WDR7 Missense_Mutation p.L837I 0.31 deleterious(0.03) probably_damaging(0.996) TCGA-FP-A4BE-01 18 55144036 55144036 G A ONECUT2 3'UTR 0.33 TCGA-FP-A4BE-01 18 55273187 55273188 - G NARS Frame_Shift_Ins p.K385Qfs*20 0.44 TCGA-FP-A4BE-01 18 56586416 56586416 G A ZNF532 Silent p.P299P 0.22 TCGA-FP-A4BE-01 18 57013194 57013194 T - LMAN1 Frame_Shift_Del p.E305Rfs*22 0.28 TCGA-FP-A4BE-01 18 60036290 60036290 G - TNFRSF11A Frame_Shift_Del p.E382Rfs*5 0.19 TCGA-FP-A4BE-01 18 67068491 67068491 A G DOK6 Missense_Mutation p.N4S 0.28 deleterious(0.02) benign(0.061) TCGA-FP-A4BE-01 18 6868234 6868234 G A ARHGAP28 Splice_Site p.X112_splice 0.21 TCGA-FP-A4BE-01 18 6941958 6941959 - C LAMA1 3'UTR 0.28 TCGA-FP-A4BE-01 18 74153359 74153359 G A ZNF516 Missense_Mutation p.A551V 0.32 tolerated(0.26) benign(0.003) TCGA-FP-A4BE-01 18 74154335 74154335 C T ZNF516 Missense_Mutation p.A226T 0.42 tolerated(0.14) possibly_damaging(0.856) TCGA-FP-A4BE-01 18 74583714 74583714 G A ZNF236 Silent p.S198S 0.36 TCGA-FP-A4BE-01 18 77171366 77171366 C G NFATC1 Missense_Mutation p.A351G 0.28 tolerated(0.38) benign(0.003) TCGA-FP-A4BE-01 18 8825125 8825125 C T SOGA2 Missense_Mutation p.T1206M 0.22 tolerated(0.26) benign(0.004) TCGA-FP-A4BE-01 19 10226676 10226676 G A EIF3G Missense_Mutation p.R224C 0.33 deleterious(0.01) benign(0.004) TCGA-FP-A4BE-01 19 10419343 10419343 C A ZGLP1 Missense_Mutation p.Q5H 0.22 deleterious_low_confidence(0) benign(0.05) TCGA-FP-A4BE-01 19 10419386 10419386 T G ZGLP1 5'UTR 0.44 TCGA-FP-A4BE-01 19 10463754 10463754 C T TYK2 Silent p.A1016A 0.27 TCGA-FP-A4BE-01 19 1080948 1080948 G A HMHA1 Missense_Mutation p.R708H 0.27 deleterious(0) probably_damaging(0.969) TCGA-FP-A4BE-01 19 11312710 11312710 C T DOCK6 Missense_Mutation p.R1848H 0.30 deleterious(0.01) possibly_damaging(0.782) TCGA-FP-A4BE-01 19 11471968 11471968 C A DKFZP761J1410 Missense_Mutation p.P131Q 0.14 deleterious(0) probably_damaging(0.998) TCGA-FP-A4BE-01 19 12501372 12501372 T - ZNF799 Frame_Shift_Del p.T614Lfs*68 0.28 TCGA-FP-A4BE-01 19 12878234 12878234 C T HOOK2 Missense_Mutation p.A450T 0.16 deleterious(0) possibly_damaging(0.786) TCGA-FP-A4BE-01 19 12903715 12903715 C T JUNB 3'UTR 0.35 TCGA-FP-A4BE-01 19 13054805 13054805 G T CALR 3'UTR 0.45 TCGA-FP-A4BE-01 19 13192571 13192571 C T NFIX Missense_Mutation p.H386Y 0.26 deleterious(0.05) probably_damaging(0.998) TCGA-FP-A4BE-01 19 13249192 13249192 C T NACC1 Missense_Mutation p.A519V 0.32 deleterious_low_confidence(0.01) benign(0.212) TCGA-FP-A4BE-01 19 14029985 14029985 G A CC2D1A Missense_Mutation p.V398M 0.33 deleterious(0.01) probably_damaging(0.997) TCGA-FP-A4BE-01 19 14161599 14161599 C T IL27RA Missense_Mutation p.P478S 0.35 tolerated(0.31) benign(0.143) TCGA-FP-A4BE-01 19 1466078 1466078 C T APC2 Silent p.S926S 0.29 TCGA-FP-A4BE-01 19 15121966 15121966 C T CCDC105 Missense_Mutation p.P110L 0.33 deleterious(0) probably_damaging(0.96) TCGA-FP-A4BE-01 19 1592612 1592612 C A MBD3 Nonsense_Mutation p.E7* 0.29 TCGA-FP-A4BE-01 19 16280466 16280466 A C CIB3 Missense_Mutation p.L58R 0.35 tolerated(0.54) possibly_damaging(0.848) TCGA-FP-A4BE-01 19 16918919 16918919 G A NWD1 Missense_Mutation p.R1420H 0.34 tolerated(0.15) benign(0.023) TCGA-FP-A4BE-01 19 17085950 17085950 G A CPAMD8 Missense_Mutation p.P723L 0.21 tolerated(0.51) benign(0.019) TCGA-FP-A4BE-01 19 17132959 17132959 C T CPAMD8 Missense_Mutation p.R89H 0.30 deleterious(0.03) benign(0.249) TCGA-FP-A4BE-01 19 17339846 17339846 G T OCEL1 3'UTR 0.36 TCGA-FP-A4BE-01 19 17387324 17387324 C T BABAM1 Missense_Mutation p.P197L 0.25 deleterious(0.01) probably_damaging(1) TCGA-FP-A4BE-01 19 17950336 17950336 A G JAK3 Missense_Mutation p.V464A 0.30 tolerated(0.42) benign(0.001) TCGA-FP-A4BE-01 19 17994765 17994765 C T SLC5A5 Missense_Mutation p.S479L 0.33 tolerated(0.09) benign(0.014) TCGA-FP-A4BE-01 19 1819035 1819035 G - REXO1 Frame_Shift_Del p.R916Gfs*5 0.22 TCGA-FP-A4BE-01 19 18375782 18375782 A G KIAA1683 Silent p.R856R 0.10 TCGA-FP-A4BE-01 19 18474214 18474215 TT - PGPEP1 Frame_Shift_Del p.F151Yfs*39 0.26 TCGA-FP-A4BE-01 19 18561309 18561309 G - ELL Frame_Shift_Del p.G482Efs*9 0.24 TCGA-FP-A4BE-01 19 1877672 1877672 G A ABHD17A Missense_Mutation p.P232L 0.33 tolerated(0.23) benign(0.274) TCGA-FP-A4BE-01 19 18779455 18779455 C T KLHL26 Silent p.Y416Y 0.36 TCGA-FP-A4BE-01 19 18967091 18967092 AG - UPF1 Frame_Shift_Del p.E605Afs*17 0.25 TCGA-FP-A4BE-01 19 18968240 18968240 C T UPF1 Missense_Mutation p.R694W 0.38 deleterious(0.01) probably_damaging(0.957) TCGA-FP-A4BE-01 19 18975059 18975059 G - UPF1 Frame_Shift_Del 0.22 TCGA-FP-A4BE-01 19 19245617 19245617 G A TMEM161A Missense_Mutation p.A28V 0.50 deleterious(0) probably_damaging(0.998) TCGA-FP-A4BE-01 19 19359520 19359520 C - NCAN Frame_Shift_Del p.P1218Lfs*23 0.28 TCGA-FP-A4BE-01 19 19379464 19379464 G A TM6SF2 Missense_Mutation p.A195V 0.27 tolerated(0.39) benign(0.003) TCGA-FP-A4BE-01 19 19745506 19745506 C T GMIP Missense_Mutation p.E632K 0.31 deleterious(0.05) benign(0.249) TCGA-FP-A4BE-01 19 2039737 2039737 C T MKNK2 Missense_Mutation p.V425I 0.36 tolerated(0.92) benign(0) TCGA-FP-A4BE-01 19 22156359 22156359 C T ZNF208 Missense_Mutation p.G493R 0.23 tolerated(0.08) unknown(0) TCGA-FP-A4BE-01 19 22193620 22193620 G A ZNF208 5'UTR 0.21 TCGA-FP-A4BE-01 19 22940118 22940118 A G ZNF99 Nonstop_Mutation p.*865Qext*? 0.30 TCGA-FP-A4BE-01 19 23406301 23406301 G A ZNF724P Missense_Mutation p.T249I 0.30 deleterious(0.01) probably_damaging(0.925) TCGA-FP-A4BE-01 19 2733465 2733465 G T SLC39A3 Missense_Mutation p.L77I 0.31 tolerated(0.23) benign(0.015) TCGA-FP-A4BE-01 19 2989160 2989160 G A TLE6 Missense_Mutation p.R281Q 0.28 tolerated(0.13) possibly_damaging(0.644) TCGA-FP-A4BE-01 19 3009542 3009542 C T TLE2 Missense_Mutation p.V391M 0.41 tolerated(1) benign(0) TCGA-FP-A4BE-01 19 30165261 30165261 G A PLEKHF1 Missense_Mutation p.R172H 0.29 deleterious(0) probably_damaging(1) TCGA-FP-A4BE-01 19 30313457 30313457 G A CCNE1 Missense_Mutation p.A353T 0.30 tolerated(0.15) benign(0.112) TCGA-FP-A4BE-01 19 30934952 30934952 G A ZNF536 Silent p.P161P 0.15 TCGA-FP-A4BE-01 19 3179113 3179113 C G S1PR4 Missense_Mutation p.A108G 0.24 tolerated(0.28) benign(0.004) TCGA-FP-A4BE-01 19 3179520 3179520 C T S1PR4 Missense_Mutation p.R244C 0.37 deleterious(0) benign(0.027) TCGA-FP-A4BE-01 19 3204661 3204661 C T NCLN Missense_Mutation p.R374C 0.30 deleterious(0) possibly_damaging(0.827) TCGA-FP-A4BE-01 19 33621086 33621086 G A GPATCH1 3'UTR 0.24 TCGA-FP-A4BE-01 19 33703794 33703794 G - SLC7A10 Frame_Shift_Del p.T158Pfs*12 0.23 TCGA-FP-A4BE-01 19 3452527 3452527 A G NFIC Missense_Mutation p.T378A 0.22 tolerated(0.14) benign(0.307) TCGA-FP-A4BE-01 19 3523010 3523010 G A FZR1 Missense_Mutation p.R8H 0.32 deleterious_low_confidence(0.02) probably_damaging(0.948) TCGA-FP-A4BE-01 19 35850400 35850400 G A FFAR3 Missense_Mutation p.C203Y 0.10 deleterious(0) probably_damaging(0.998) TCGA-FP-A4BE-01 19 3595833 3595833 G A TBXA2R Silent p.R295R 0.27 TCGA-FP-A4BE-01 19 36053482 36053482 C T ATP4A Missense_Mutation p.R92Q 0.45 deleterious(0.04) benign(0.122) TCGA-FP-A4BE-01 19 36168971 36168971 C - UPK1A 3'UTR 0.47 TCGA-FP-A4BE-01 19 36210893 36210893 C - KMT2B Frame_Shift_Del p.R217Gfs*22 0.27 TCGA-FP-A4BE-01 19 36218396 36218396 C A KMT2B Missense_Mutation p.P1392Q 0.29 probably_damaging(0.998) TCGA-FP-A4BE-01 19 36515405 36515405 C T CLIP3 Missense_Mutation p.A271T 0.27 tolerated(0.49) benign(0.001) TCGA-FP-A4BE-01 19 3784121 3784121 C T MATK Splice_Site p.X122_splice 0.26 TCGA-FP-A4BE-01 19 37853630 37853630 G A HKR1 Silent p.T311T 0.27 TCGA-FP-A4BE-01 19 38800114 38800114 C T YIF1B Silent p.P76P 0.37 TCGA-FP-A4BE-01 19 39101768 39101768 C T MAP4K1 Missense_Mutation p.A245T 0.24 tolerated(0.7) possibly_damaging(0.497) TCGA-FP-A4BE-01 19 39232520 39232520 C T CAPN12 Missense_Mutation p.V153M 0.14 deleterious(0.01) probably_damaging(1) TCGA-FP-A4BE-01 19 39331172 39331172 C T HNRNPL Missense_Mutation p.R303H 0.25 deleterious(0.02) possibly_damaging(0.469) TCGA-FP-A4BE-01 19 39669209 39669209 G A PAK4 Missense_Mutation p.R589H 0.25 deleterious(0) probably_damaging(0.994) TCGA-FP-A4BE-01 19 39964942 39964942 G A SUPT5H Missense_Mutation p.S907N 0.30 tolerated(0.06) benign(0.051) TCGA-FP-A4BE-01 19 39997971 39997971 G A DLL3 Silent p.A462A 0.25 TCGA-FP-A4BE-01 19 40316612 40316612 G - DYRK1B Frame_Shift_Del p.Q545Sfs*19 0.22 TCGA-FP-A4BE-01 19 40392595 40392595 G A FCGBP Missense_Mutation p.P2637S 0.34 benign(0.081) TCGA-FP-A4BE-01 19 40762855 40762855 G - AKT2 Frame_Shift_Del p.L52* 0.22 TCGA-FP-A4BE-01 19 41071343 41071343 T C SPTBN4 Missense_Mutation p.V1977A 0.27 tolerated(0.15) benign(0.127) TCGA-FP-A4BE-01 19 41089528 41089528 G A SHKBP1 Missense_Mutation p.R357H 0.25 deleterious(0) probably_damaging(0.999) TCGA-FP-A4BE-01 19 41727914 41727914 T C AXL Missense_Mutation p.L180P 0.23 deleterious(0) probably_damaging(0.998) TCGA-FP-A4BE-01 19 41916544 41916544 C - BCKDHA Frame_Shift_Del p.R40Gfs*23 0.30 TCGA-FP-A4BE-01 19 41928266 41928266 G A BCKDHA Missense_Mutation p.D282N 0.30 deleterious(0) probably_damaging(0.995) TCGA-FP-A4BE-01 19 42300612 42300612 G - CEACAM3 Frame_Shift_Del p.S5Qfs*21 0.26 TCGA-FP-A4BE-01 19 42343256 42343256 T C LYPD4 Intron 0.30 TCGA-FP-A4BE-01 19 42489287 42489287 C T ATP1A3 Missense_Mutation p.R272H 0.31 deleterious(0.02) probably_damaging(0.999) TCGA-FP-A4BE-01 19 42827923 42827923 C - TMEM145 Frame_Shift_Del p.P463Rfs*106 0.22 TCGA-FP-A4BE-01 19 42838217 42838217 T C MEGF8 Missense_Mutation p.F137S 0.09 deleterious(0) benign(0.132) TCGA-FP-A4BE-01 19 43243066 43243066 T C PSG3 Silent p.T80T 0.07 TCGA-FP-A4BE-01 19 43969748 43969748 C - LYPD3 5'UTR 0.28 TCGA-FP-A4BE-01 19 44112181 44112183 TCC - ZNF428 In_Frame_Del p.E54del 0.29 TCGA-FP-A4BE-01 19 44570671 44570671 A G ZNF223 Silent p.K230K 0.06 TCGA-FP-A4BE-01 19 44571426 44571426 C T ZNF223 Missense_Mutation p.T482M 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.65) TCGA-FP-A4BE-01 19 44590277 44590277 T C ZNF284 Missense_Mutation p.S216P 0.18 deleterious(0.03) probably_damaging(0.969) TCGA-FP-A4BE-01 19 44933612 44933612 C T ZNF229 Silent p.L448L 0.33 TCGA-FP-A4BE-01 19 45477833 45477833 T C CLPTM1 Silent p.F149F 0.42 TCGA-FP-A4BE-01 19 46094297 46094297 G A GPR4 Silent p.S276S 0.27 TCGA-FP-A4BE-01 19 46288999 46288999 C T DMWD Silent p.P585P 0.40 TCGA-FP-A4BE-01 19 46857124 46857124 G A PPP5C Missense_Mutation p.A81T 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-FP-A4BE-01 19 47111800 47111800 A C CALM3 Silent p.T80T 0.27 TCGA-FP-A4BE-01 19 47259842 47259843 - GG FKRP Frame_Shift_Ins p.A381Gfs*48 0.24 TCGA-FP-A4BE-01 19 474717 474717 G A ODF3L2 Missense_Mutation p.R11W 0.31 tolerated_low_confidence(0.08) benign(0.007) TCGA-FP-A4BE-01 19 48244520 48244520 G A EHD2 Missense_Mutation p.R488H 0.28 tolerated(0.13) benign(0.056) TCGA-FP-A4BE-01 19 48801561 48801561 C T CCDC114 Missense_Mutation p.S389N 0.31 tolerated(0.44) benign(0.007) TCGA-FP-A4BE-01 19 49005800 49005800 G - LMTK3 Frame_Shift_Del p.E258Rfs*46 0.25 TCGA-FP-A4BE-01 19 49106977 49106977 C T FAM83E Missense_Mutation p.R317H 0.24 deleterious(0) probably_damaging(0.98) TCGA-FP-A4BE-01 19 49110225 49110225 G A SPACA4 5'UTR 0.30 TCGA-FP-A4BE-01 19 49391244 49391245 - G TULP2 Frame_Shift_Ins p.L304Pfs*10 0.27 TCGA-FP-A4BE-01 19 49404146 49404147 - G NUCB1 Frame_Shift_Ins p.A33Gfs*11 0.12 TCGA-FP-A4BE-01 19 49535233 49535233 G A CGB2 5'Flank 0.16 TCGA-FP-A4BE-01 19 49619616 49619616 G T LIN7B Missense_Mutation p.G109C 0.24 deleterious(0) probably_damaging(0.999) TCGA-FP-A4BE-01 19 49658222 49658222 C A HRC Missense_Mutation p.E91D 0.33 deleterious(0.01) possibly_damaging(0.899) TCGA-FP-A4BE-01 19 49949871 49949871 G A PIH1D1 Silent p.D256D 0.21 TCGA-FP-A4BE-01 19 49967402 49967402 G A ALDH16A1 Missense_Mutation p.V405M 0.26 tolerated(0.07) benign(0.184) TCGA-FP-A4BE-01 19 50017380 50017380 G - FCGRT Frame_Shift_Del p.G107Efs*29 0.15 TCGA-FP-A4BE-01 19 50155690 50155690 C T SCAF1 Missense_Mutation p.R682C 0.27 unknown(0) TCGA-FP-A4BE-01 19 50248607 50248607 C - TSKS Frame_Shift_Del p.A347Rfs*20 0.35 TCGA-FP-A4BE-01 19 50249978 50249978 C A TSKS Missense_Mutation p.E247D 0.20 deleterious_low_confidence(0.02) probably_damaging(0.994) TCGA-FP-A4BE-01 19 50265282 50265282 G A TSKS Silent p.D126D 0.25 TCGA-FP-A4BE-01 19 50333113 50333113 C - MED25 Frame_Shift_Del p.P201Rfs*13 0.32 TCGA-FP-A4BE-01 19 50357701 50357701 T C PTOV1 Silent p.G70G 0.30 TCGA-FP-A4BE-01 19 50397670 50397670 T C IL4I1 Missense_Mutation p.Y163C 0.27 tolerated(0.15) probably_damaging(0.986) TCGA-FP-A4BE-01 19 50713782 50713782 C T MYH14 Missense_Mutation p.R54C 0.31 deleterious(0) probably_damaging(0.921) TCGA-FP-A4BE-01 19 50804952 50804952 G A MYH14 Missense_Mutation p.R1835H 0.39 deleterious(0) probably_damaging(1) TCGA-FP-A4BE-01 19 51017793 51017793 C T ASPDH 5'Flank 0.26 TCGA-FP-A4BE-01 19 51330383 51330383 G A KLK15 Missense_Mutation p.R78C 0.32 deleterious(0.02) benign(0.175) TCGA-FP-A4BE-01 19 5133979 5133979 G A KDM4B Silent p.A664A 0.26 TCGA-FP-A4BE-01 19 51451957 51451957 G A KLK5 Missense_Mutation p.P222L 0.31 deleterious(0) benign(0.035) TCGA-FP-A4BE-01 19 51452298 51452298 C - KLK5 Frame_Shift_Del p.V137Sfs*23 0.21 TCGA-FP-A4BE-01 19 5207965 5207965 G A PTPRS Nonsense_Mutation p.R1916* 0.33 TCGA-FP-A4BE-01 19 52619872 52619872 T C ZNF616 Missense_Mutation p.E182G 0.31 tolerated(0.25) benign(0) TCGA-FP-A4BE-01 19 54313858 54313858 C T NLRP12 Missense_Mutation p.R352H 0.32 tolerated(0.94) benign(0.024) TCGA-FP-A4BE-01 19 54377265 54377265 G A MYADM Missense_Mutation p.R161Q 0.35 tolerated(0.18) benign(0.009) TCGA-FP-A4BE-01 19 549629 549629 G T GZMM Splice_Site p.X205_splice 0.47 TCGA-FP-A4BE-01 19 55086027 55086027 C - LILRA2 Frame_Shift_Del p.L112Wfs*5 0.11 TCGA-FP-A4BE-01 19 55221063 55221063 G T AC098784.2 3'Flank 0.56 TCGA-FP-A4BE-01 19 55558836 55558836 C T RDH13 Missense_Mutation p.A227T 0.30 deleterious(0.04) benign(0.005) TCGA-FP-A4BE-01 19 55560066 55560066 C T RDH13 Missense_Mutation p.E136K 0.28 tolerated(0.5) benign(0.021) TCGA-FP-A4BE-01 19 55672679 55672679 G A DNAAF3 Silent p.S325S 0.24 TCGA-FP-A4BE-01 19 55912814 55912814 C T UBE2S Missense_Mutation p.R220Q 0.18 deleterious(0.01) unknown(0) TCGA-FP-A4BE-01 19 56047629 56047629 C T SBK2 Silent p.A11A 0.32 TCGA-FP-A4BE-01 19 56170618 56170618 G A U2AF2 Missense_Mutation p.R31H 0.29 tolerated_low_confidence(0.33) benign(0.002) TCGA-FP-A4BE-01 19 56181034 56181034 C T U2AF2 Silent p.G423G 0.15 TCGA-FP-A4BE-01 19 56732851 56732851 C T ZSCAN5A 3'UTR 0.34 TCGA-FP-A4BE-01 19 57175913 57175913 G A ZNF835 Silent p.G218G 0.30 TCGA-FP-A4BE-01 19 57175984 57175984 G A ZNF835 Missense_Mutation p.R195C 0.33 deleterious(0) possibly_damaging(0.862) TCGA-FP-A4BE-01 19 57723721 57723721 G A ZNF264 Missense_Mutation p.R419Q 0.28 deleterious(0.02) probably_damaging(0.996) TCGA-FP-A4BE-01 19 5788376 5788376 G - DUS3L Frame_Shift_Del p.L312Sfs*20 0.22 TCGA-FP-A4BE-01 19 58117806 58117806 C T ZNF530 Missense_Mutation p.R305C 0.28 tolerated(0.05) probably_damaging(0.964) TCGA-FP-A4BE-01 19 58320275 58320275 G A ZNF552 Silent p.H119H 0.40 TCGA-FP-A4BE-01 19 5867620 5867620 G A FUT5 Silent p.D39D 0.38 TCGA-FP-A4BE-01 19 58806624 58806624 C T ZNF8 Missense_Mutation p.R484W 0.30 deleterious(0) probably_damaging(0.998) TCGA-FP-A4BE-01 19 5923223 5923223 C T RANBP3 Silent p.A397A 0.24 TCGA-FP-A4BE-01 19 5923269 5923269 C T RANBP3 Missense_Mutation p.R382Q 0.30 tolerated(0.25) benign(0.04) TCGA-FP-A4BE-01 19 6468936 6468936 C - DENND1C Frame_Shift_Del p.G479Afs*3 0.32 TCGA-FP-A4BE-01 19 6697783 6697783 G A C3 Silent p.F821F 0.26 TCGA-FP-A4BE-01 19 6741246 6741246 A - TRIP10 Frame_Shift_Del p.K52Nfs*29 0.20 TCGA-FP-A4BE-01 19 6857166 6857166 G A VAV1 3'Flank 0.26 TCGA-FP-A4BE-01 19 7615275 7615275 A G PNPLA6 Missense_Mutation p.I645V 0.33 deleterious(0.02) benign(0.023) TCGA-FP-A4BE-01 19 7747332 7747332 G A TRAPPC5 Missense_Mutation p.V65M 0.36 tolerated(0.27) benign(0.04) TCGA-FP-A4BE-01 19 7925501 7925501 C T EVI5L Nonsense_Mutation p.Q477* 0.17 TCGA-FP-A4BE-01 19 7965091 7965091 A G LRRC8E Missense_Mutation p.R562G 0.34 deleterious(0) benign(0.02) TCGA-FP-A4BE-01 19 7976013 7976013 C T MAP2K7 Missense_Mutation p.T275M 0.31 deleterious(0) probably_damaging(0.997) TCGA-FP-A4BE-01 19 7976364 7976364 C T MAP2K7 Missense_Mutation p.T327M 0.27 deleterious(0) probably_damaging(0.961) TCGA-FP-A4BE-01 19 8032648 8032648 G A ELAVL1 Missense_Mutation p.R153W 0.35 deleterious(0.03) benign(0.077) TCGA-FP-A4BE-01 19 853270 853270 G A ELANE Missense_Mutation p.R78H 0.29 tolerated(0.15) benign(0.002) TCGA-FP-A4BE-01 19 8595190 8595190 C T MYO1F Missense_Mutation p.V740I 0.25 tolerated(0.14) benign(0.086) TCGA-FP-A4BE-01 19 868062 868062 G A MED16 3'UTR 0.48 TCGA-FP-A4BE-01 19 8953587 8953587 G T MBD3L1 Missense_Mutation p.S78I 0.29 deleterious(0) probably_damaging(0.983) TCGA-FP-A4BE-01 19 899652 899652 C T R3HDM4 Missense_Mutation p.R199Q 0.27 tolerated(0.59) benign(0.184) TCGA-FP-A4BE-01 19 9064269 9064269 G A MUC16 Missense_Mutation p.A7726V 0.25 unknown(0) TCGA-FP-A4BE-01 19 9090001 9090001 A G MUC16 Missense_Mutation p.V605A 0.20 unknown(0) TCGA-FP-A4BE-01 19 9204336 9204336 G A OR1M1 Missense_Mutation p.R139H 0.35 tolerated(0.09) benign(0.016) TCGA-FP-A4BE-01 19 9237177 9237177 G A OR7G3 Silent p.I150I 0.29 TCGA-FP-A4BE-01 19 9325369 9325369 C T OR7D4 Missense_Mutation p.V49I 0.31 tolerated(0.84) benign(0.005) TCGA-FP-A4BE-01 19 9639964 9639964 C T ZNF426 Missense_Mutation p.E253K 0.30 tolerated(0.3) possibly_damaging(0.652) TCGA-FP-A4BE-01 19 9868260 9868260 C T ZNF846 Missense_Mutation p.R498Q 0.35 tolerated(0.06) possibly_damaging(0.646) TCGA-FP-A4BE-01 1 101705311 101705311 C T S1PR1 Silent p.T257T 0.48 TCGA-FP-A4BE-01 1 103428218 103428218 T A COL11A1 Missense_Mutation p.E1005D 0.25 unknown(0) TCGA-FP-A4BE-01 1 104163227 104163227 C T AMY2A Missense_Mutation p.R267W 0.31 deleterious(0.03) probably_damaging(0.999) TCGA-FP-A4BE-01 1 107937908 107937908 A G NTNG1 Silent p.P340P 0.18 TCGA-FP-A4BE-01 1 109377642 109377642 G A AKNAD1 Nonsense_Mutation p.R525* 0.50 TCGA-FP-A4BE-01 1 109801082 109801082 C T CELSR2 Silent p.C1113C 0.17 TCGA-FP-A4BE-01 1 109810236 109810236 C T CELSR2 Missense_Mutation p.S2027F 0.25 deleterious(0) possibly_damaging(0.899) TCGA-FP-A4BE-01 1 110031653 110031653 C T ATXN7L2 Missense_Mutation p.A323V 0.15 tolerated(0.36) benign(0.035) TCGA-FP-A4BE-01 1 110050334 110050334 G A AMIGO1 Missense_Mutation p.R401W 0.25 deleterious(0.01) probably_damaging(0.965) TCGA-FP-A4BE-01 1 110116577 110116577 A G GNAI3 Missense_Mutation p.Y74C 0.22 deleterious(0.02) probably_damaging(0.986) TCGA-FP-A4BE-01 1 110170832 110170832 G A AMPD2 Missense_Mutation p.R457Q 0.21 tolerated(0.15) benign(0.003) TCGA-FP-A4BE-01 1 110200445 110200445 C A GSTM4 Missense_Mutation p.A104D 0.22 deleterious(0) probably_damaging(0.985) TCGA-FP-A4BE-01 1 110259968 110259968 A G GSTM5 Missense_Mutation p.K193E 0.23 tolerated(0.06) benign(0.005) TCGA-FP-A4BE-01 1 11082644 11082644 C T TARDBP Missense_Mutation p.S393L 0.23 tolerated(0.25) benign(0.001) TCGA-FP-A4BE-01 1 111147415 111147415 G A KCNA2 5'UTR 0.27 TCGA-FP-A4BE-01 1 111216190 111216190 G A KCNA3 Silent p.S414S 0.15 TCGA-FP-A4BE-01 1 11141137 11141137 A G EXOSC10 Splice_Site p.X479_splice 0.19 TCGA-FP-A4BE-01 1 11181345 11181345 G A MTOR Silent p.D2297D 0.15 TCGA-FP-A4BE-01 1 113456694 113456694 A G SLC16A1 Missense_Mutation p.M441T 0.11 tolerated(0.45) possibly_damaging(0.593) TCGA-FP-A4BE-01 1 115130548 115130548 G A DENND2C Silent p.S819S 0.20 TCGA-FP-A4BE-01 1 117554380 117554380 C A CD101 Silent p.P211P 0.09 TCGA-FP-A4BE-01 1 118039461 118039461 A - MAN1A2 Frame_Shift_Del p.K456Rfs*15 0.13 TCGA-FP-A4BE-01 1 11854864 11854864 C T MTHFR Missense_Mutation p.R363H 0.22 deleterious(0) probably_damaging(0.999) TCGA-FP-A4BE-01 1 118567980 118567980 G - SPAG17 Frame_Shift_Del p.Q1264Rfs*3 0.27 TCGA-FP-A4BE-01 1 119934795 119934795 C T HAO2 Silent p.G278G 0.23 TCGA-FP-A4BE-01 1 12059112 12059112 G A MFN2 Missense_Mutation p.R259H 0.06 deleterious(0) probably_damaging(0.998) TCGA-FP-A4BE-01 1 1237375 1237376 - A ACAP3 Frame_Shift_Ins p.V111Cfs*16 0.19 TCGA-FP-A4BE-01 1 1262254 1262254 C - GLTPD1 5'UTR 0.30 TCGA-FP-A4BE-01 1 1273751 1273751 T C DVL1 Missense_Mutation p.K444E 0.47 deleterious(0) benign(0.086) TCGA-FP-A4BE-01 1 1290093 1290093 G A MXRA8 Silent p.N306N 0.58 TCGA-FP-A4BE-01 1 12908051 12908051 G A HNRNPCL1 Missense_Mutation p.S31L 0.09 deleterious(0) benign(0.156) TCGA-FP-A4BE-01 1 12954550 12954550 G A PRAMEF10 Missense_Mutation p.R245C 0.35 tolerated(0.08) benign(0.001) TCGA-FP-A4BE-01 1 1322586 1322586 G A CCNL2 3'UTR 0.45 TCGA-FP-A4BE-01 1 13743058 13743058 G A PRAMEF20 Missense_Mutation p.D83N 0.15 deleterious(0.03) benign(0.019) TCGA-FP-A4BE-01 1 14108525 14108525 T C PRDM2 Missense_Mutation p.M1412T 0.29 unknown(0) TCGA-FP-A4BE-01 1 1455603 1455603 C T ATAD3A Silent p.A247A 0.50 TCGA-FP-A4BE-01 1 147231086 147231086 C T GJA5 Silent p.T87T 0.39 TCGA-FP-A4BE-01 1 147380398 147380398 C T GJA8 Missense_Mutation p.R106C 0.21 deleterious(0.01) probably_damaging(0.935) TCGA-FP-A4BE-01 1 147380608 147380608 C T GJA8 Missense_Mutation p.R176W 0.49 tolerated(0.08) benign(0.035) TCGA-FP-A4BE-01 1 151022952 151022952 T C C1orf56 3'UTR 0.24 TCGA-FP-A4BE-01 1 151144226 151144226 A G TMOD4 Silent p.P167P 0.27 TCGA-FP-A4BE-01 1 151774250 151774250 A G LINGO4 Missense_Mutation p.C311R 0.09 tolerated(0.73) benign(0.002) TCGA-FP-A4BE-01 1 152060619 152060619 T G TCHHL1 Translation_Start_Site p.M1? 0.25 deleterious(0) probably_damaging(0.994) TCGA-FP-A4BE-01 1 152191657 152191657 A G HRNR Silent p.G816G 0.14 TCGA-FP-A4BE-01 1 152191665 152191665 C T HRNR Missense_Mutation p.A814T 0.16 unknown(0) TCGA-FP-A4BE-01 1 152191750 152191750 T C HRNR Silent p.S785S 0.07 TCGA-FP-A4BE-01 1 152193102 152193113 GGCTGTAAGAGT AGCTGGAAGAAC HRNR Missense_Mutation p.YSYSR331CSSSC 0.14 TCGA-FP-A4BE-01 1 152882759 152882759 C G IVL Missense_Mutation p.H162Q 0.17 tolerated(0.74) unknown(0) TCGA-FP-A4BE-01 1 153800617 153800617 G A GATAD2B Silent p.G69G 0.21 TCGA-FP-A4BE-01 1 154544436 154544436 C A CHRNB2 Silent p.R379R 0.27 TCGA-FP-A4BE-01 1 155162659 155162659 G T MUC1 5'UTR 0.31 TCGA-FP-A4BE-01 1 155257872 155257872 G A HCN3 Missense_Mutation p.R648H 0.10 tolerated_low_confidence(0.54) benign(0.162) TCGA-FP-A4BE-01 1 155290332 155290332 T C FDPS Missense_Mutation p.Y398H 0.07 tolerated(0.55) benign(0.001) TCGA-FP-A4BE-01 1 155717877 155717877 C T GON4L 3'Flank 0.32 TCGA-FP-A4BE-01 1 156046378 156046378 C T MEX3A Missense_Mutation p.R517Q 0.24 tolerated(0.22) probably_damaging(0.921) TCGA-FP-A4BE-01 1 156618653 156618653 G T BCAN Missense_Mutation p.D355Y 0.23 deleterious(0.01) probably_damaging(0.994) TCGA-FP-A4BE-01 1 156899080 156899080 C A LRRC71 Silent p.S335S 0.29 TCGA-FP-A4BE-01 1 1575703 1575703 C T CDK11B Missense_Mutation p.D399N 0.16 unknown(0) TCGA-FP-A4BE-01 1 15769935 15769935 G T CTRC Missense_Mutation p.K126N 0.06 deleterious(0) probably_damaging(0.999) TCGA-FP-A4BE-01 1 158063228 158063228 G A KIRREL Missense_Mutation p.R524H 0.27 deleterious(0.05) possibly_damaging(0.479) TCGA-FP-A4BE-01 1 158154083 158154083 T C CD1D 3'UTR 0.26 TCGA-FP-A4BE-01 1 161071865 161071865 C T PFDN2 Silent p.L87L 0.21 TCGA-FP-A4BE-01 1 161072148 161072148 G A PFDN2 Silent p.N31N 0.23 TCGA-FP-A4BE-01 1 161134660 161134660 A - USP21 Frame_Shift_Del p.S476Vfs*3 0.19 TCGA-FP-A4BE-01 1 161514529 161514529 T - FCGR3A Frame_Shift_Del p.N216Mfs*7 0.22 TCGA-FP-A4BE-01 1 16256120 16256120 G A SPEN Missense_Mutation p.V1129I 0.24 benign(0.001) TCGA-FP-A4BE-01 1 16377094 16377094 G A CLCNKB Missense_Mutation p.R351Q 0.19 tolerated(0.48) possibly_damaging(0.903) TCGA-FP-A4BE-01 1 165370403 165370403 G - RXRG 3'UTR 0.22 TCGA-FP-A4BE-01 1 167095203 167095203 A G DUSP27 Missense_Mutation p.M279V 0.47 tolerated(0.08) benign(0.256) TCGA-FP-A4BE-01 1 167095706 167095706 C T DUSP27 Silent p.H446H 0.23 TCGA-FP-A4BE-01 1 17029222 17029222 C T ESPNP RNA 0.06 TCGA-FP-A4BE-01 1 17034075 17034075 C T ESPNP RNA 0.15 TCGA-FP-A4BE-01 1 171303826 171303826 C T FMO4 Silent p.I368I 0.24 TCGA-FP-A4BE-01 1 171621376 171621376 G A MYOC Missense_Mutation p.R126W 0.21 deleterious(0.01) possibly_damaging(0.487) TCGA-FP-A4BE-01 1 175355239 175355239 C T TNR Missense_Mutation p.R569Q 0.19 tolerated(0.42) benign(0.001) TCGA-FP-A4BE-01 1 178427092 178427092 C T RASAL2 Nonsense_Mutation p.Q889* 0.19 TCGA-FP-A4BE-01 1 179414285 179414285 A - AXDND1 Frame_Shift_Del p.N583Tfs*11 0.15 TCGA-FP-A4BE-01 1 180063631 180063631 A G CEP350 Silent p.T2797T 0.40 TCGA-FP-A4BE-01 1 182026138 182026138 C T ZNF648 Silent p.P336P 0.23 TCGA-FP-A4BE-01 1 183079647 183079647 C T LAMC1 Silent p.S293S 0.39 TCGA-FP-A4BE-01 1 183881272 183881272 A T RGL1 Missense_Mutation p.K575M 0.12 deleterious(0.01) possibly_damaging(0.907) TCGA-FP-A4BE-01 1 186024781 186024782 - A HMCN1 Frame_Shift_Ins p.Y2376Ifs*2 0.17 TCGA-FP-A4BE-01 1 186113349 186113349 G A HMCN1 Missense_Mutation p.E4657K 0.40 benign(0.001) TCGA-FP-A4BE-01 1 18809344 18809344 C T KLHDC7A Silent p.F623F 0.49 TCGA-FP-A4BE-01 1 19029646 19029646 C T PAX7 Silent p.G337G 0.20 TCGA-FP-A4BE-01 1 19499498 19499498 C T UBR4 Silent p.A1127A 0.36 TCGA-FP-A4BE-01 1 19635035 19635035 G - AKR7A2 Frame_Shift_Del p.Q134Kfs*87 0.17 TCGA-FP-A4BE-01 1 197071243 197071243 G A ASPM Missense_Mutation p.H2380Y 0.42 tolerated(0.15) benign(0.067) TCGA-FP-A4BE-01 1 197071489 197071489 C T ASPM Missense_Mutation p.A2298T 0.25 deleterious(0.02) probably_damaging(0.953) TCGA-FP-A4BE-01 1 198288711 198288711 A G NEK7 3'UTR 0.19 TCGA-FP-A4BE-01 1 20005415 20005415 G A HTR6 Missense_Mutation p.V293M 0.21 deleterious(0.04) probably_damaging(0.997) TCGA-FP-A4BE-01 1 20009614 20009614 G A TMCO4 Silent p.C608C 0.34 TCGA-FP-A4BE-01 1 200708978 200708978 G T CAMSAP2 Missense_Mutation p.R8M 0.18 deleterious_low_confidence(0) probably_damaging(0.922) TCGA-FP-A4BE-01 1 200817781 200817781 G A CAMSAP2 Silent p.S628S 0.30 TCGA-FP-A4BE-01 1 200969558 200969558 C T KIF21B Missense_Mutation p.E549K 0.49 tolerated(0.09) probably_damaging(0.931) TCGA-FP-A4BE-01 1 201043696 201043696 C T CACNA1S Silent p.A667A 0.42 TCGA-FP-A4BE-01 1 203135072 203135072 A G ADORA1 3'UTR 0.21 TCGA-FP-A4BE-01 1 204228470 204228471 - T PLEKHA6 Frame_Shift_Ins p.I308Nfs*25 0.20 TCGA-FP-A4BE-01 1 204957938 204957938 G T NFASC Intron 0.20 TCGA-FP-A4BE-01 1 205388453 205388453 T - LEMD1 Frame_Shift_Del p.K37Sfs*2 0.19 TCGA-FP-A4BE-01 1 205588952 205588952 A G ELK4 Intron 0.20 TCGA-FP-A4BE-01 1 205764134 205764134 C T SLC41A1 Missense_Mutation p.R407H 0.23 deleterious(0.02) probably_damaging(0.91) TCGA-FP-A4BE-01 1 208255757 208255757 C A PLXNA2 Missense_Mutation p.V799F 0.29 deleterious(0) benign(0.265) TCGA-FP-A4BE-01 1 209807874 209807874 C T LAMB3 Missense_Mutation p.R161H 0.44 tolerated(0.15) benign(0.036) TCGA-FP-A4BE-01 1 21016737 21016737 C T KIF17 Missense_Mutation p.R442H 0.11 deleterious(0) possibly_damaging(0.776) TCGA-FP-A4BE-01 1 210847790 210847790 A G HHAT 3'UTR 0.19 TCGA-FP-A4BE-01 1 21137375 21137375 C T EIF4G3 Missense_Mutation p.D1484N 0.41 deleterious(0.01) possibly_damaging(0.895) TCGA-FP-A4BE-01 1 211444619 211444619 G T RCOR3 Missense_Mutation p.W90L 0.45 deleterious(0) probably_damaging(0.995) TCGA-FP-A4BE-01 1 211526725 211526725 C T TRAF5 Silent p.C48C 0.47 TCGA-FP-A4BE-01 1 211545647 211545647 T C TRAF5 Missense_Mutation p.V426A 0.23 deleterious(0.03) benign(0.37) TCGA-FP-A4BE-01 1 220191833 220191833 G A EPRS Silent p.V484V 0.42 TCGA-FP-A4BE-01 1 220300109 220300109 C A IARS2 Silent p.A587A 0.25 TCGA-FP-A4BE-01 1 22217111 22217112 CT - HSPG2 Frame_Shift_Del p.E107Vfs*104 0.45 TCGA-FP-A4BE-01 1 222867168 222867168 T G AIDA Missense_Mutation p.E84D 0.20 tolerated(0.68) benign(0.001) TCGA-FP-A4BE-01 1 223991931 223991931 T - TP53BP2 Frame_Shift_Del p.V199* 0.32 TCGA-FP-A4BE-01 1 225142799 225142799 A T DNAH14 Missense_Mutation p.E72D 0.17 tolerated(0.08) benign(0.022) TCGA-FP-A4BE-01 1 225702535 225702535 T C ENAH Silent p.S327S 0.40 TCGA-FP-A4BE-01 1 225977011 225977011 C T SRP9 Nonsense_Mutation p.R71* 0.40 TCGA-FP-A4BE-01 1 226109287 226109287 G A RP4-559A3.7 Missense_Mutation p.R126C 0.27 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-FP-A4BE-01 1 228444455 228444455 G A OBSCN Silent p.T1563T 0.48 TCGA-FP-A4BE-01 1 228487671 228487671 G A OBSCN Silent p.A4521A 0.17 TCGA-FP-A4BE-01 1 228503650 228503650 C T OBSCN Missense_Mutation p.T5329I 0.17 probably_damaging(0.964) TCGA-FP-A4BE-01 1 228550295 228550295 C T OBSCN Missense_Mutation p.A7184V 0.19 benign(0.012) TCGA-FP-A4BE-01 1 228645542 228645542 A G HIST3H2A 5'UTR 0.12 TCGA-FP-A4BE-01 1 229661733 229661733 A - ABCB10 Frame_Shift_Del p.F619Sfs*31 0.18 TCGA-FP-A4BE-01 1 230827305 230827305 G A COG2 Missense_Mutation p.E704K 0.17 tolerated(0.19) benign(0.017) TCGA-FP-A4BE-01 1 230975636 230975636 C T C1orf198 Missense_Mutation p.V316I 0.38 tolerated(1) benign(0.003) TCGA-FP-A4BE-01 1 231060635 231060635 C A TTC13 Missense_Mutation p.R558L 0.21 deleterious(0.01) possibly_damaging(0.664) TCGA-FP-A4BE-01 1 233152878 233152878 G A PCNXL2 Missense_Mutation p.T1543M 0.26 tolerated(0.14) benign(0.018) TCGA-FP-A4BE-01 1 23637727 23637727 C T HNRNPR Missense_Mutation p.R422H 0.20 deleterious(0.01) benign(0.011) TCGA-FP-A4BE-01 1 238050695 238050695 A C ZP4 Silent p.T240T 0.24 TCGA-FP-A4BE-01 1 240656370 240656370 C T GREM2 Missense_Mutation p.E136K 0.21 tolerated(0.78) benign(0.013) TCGA-FP-A4BE-01 1 24080742 24080742 G A TCEB3 Missense_Mutation p.D590N 0.41 tolerated(0.1) benign(0.06) TCGA-FP-A4BE-01 1 24086058 24086058 C T TCEB3 Nonsense_Mutation p.R798* 0.22 TCGA-FP-A4BE-01 1 243433519 243433519 C T SDCCAG8 Silent p.D60D 0.20 TCGA-FP-A4BE-01 1 2451312 2451312 C T PANK4 Missense_Mutation p.A261T 0.36 tolerated(0.71) possibly_damaging(0.531) TCGA-FP-A4BE-01 1 2453179 2453179 C T PANK4 Missense_Mutation p.R62Q 0.23 tolerated(0.16) benign(0.015) TCGA-FP-A4BE-01 1 245847561 245847561 G T KIF26B Missense_Mutation p.R762L 0.19 deleterious(0) unknown(0) TCGA-FP-A4BE-01 1 247902161 247902161 A C OR14K1 Missense_Mutation p.N82T 0.07 deleterious(0.03) possibly_damaging(0.71) TCGA-FP-A4BE-01 1 248059406 248059406 A T OR2W3 Missense_Mutation p.E173V 0.21 tolerated(0.17) benign(0.007) TCGA-FP-A4BE-01 1 248525177 248525177 T C OR2T4 Missense_Mutation p.S99P 0.09 deleterious(0) probably_damaging(0.999) TCGA-FP-A4BE-01 1 26365783 26365783 G A SLC30A2 Silent p.D329D 0.44 TCGA-FP-A4BE-01 1 26881658 26881658 G A RPS6KA1 Missense_Mutation p.G267D 0.18 deleterious(0) probably_damaging(0.997) TCGA-FP-A4BE-01 1 27089705 27089706 - G ARID1A Frame_Shift_Ins p.M890Hfs*46 0.10 TCGA-FP-A4BE-01 1 27101350 27101350 G A ARID1A Silent p.S1544S 0.43 TCGA-FP-A4BE-01 1 27120642 27120642 A C PIGV Missense_Mutation p.E39D 0.23 tolerated(1) benign(0.004) TCGA-FP-A4BE-01 1 27332928 27332928 C T FAM46B Missense_Mutation p.R262Q 0.24 tolerated(0.55) benign(0.014) TCGA-FP-A4BE-01 1 27426906 27426906 G - SLC9A1 Frame_Shift_Del p.A781Rfs*115 0.13 TCGA-FP-A4BE-01 1 28856409 28856410 - C RCC1 Frame_Shift_Ins p.A14Sfs*37 0.35 TCGA-FP-A4BE-01 1 29070322 29070322 C T YTHDF2 Missense_Mutation p.R514C 0.23 deleterious(0) probably_damaging(0.914) TCGA-FP-A4BE-01 1 32198645 32198645 C A BAI2 Missense_Mutation p.Q1184H 0.46 deleterious(0) probably_damaging(0.999) TCGA-FP-A4BE-01 1 32262281 32262281 C T SPOCD1 Silent p.P727P 0.22 TCGA-FP-A4BE-01 1 32377335 32377335 A G PTP4A2 Silent p.G94G 0.25 TCGA-FP-A4BE-01 1 33059218 33059218 G A ZBTB8A Missense_Mutation p.R229Q 0.26 benign(0.002) TCGA-FP-A4BE-01 1 33359401 33359401 A - HPCA Frame_Shift_Del p.S175Afs*38 0.32 TCGA-FP-A4BE-01 1 3342201 3342201 G A PRDM16 Missense_Mutation p.R999Q 0.24 deleterious(0) possibly_damaging(0.905) TCGA-FP-A4BE-01 1 33820015 33820015 C T PHC2 Silent p.P514P 0.22 TCGA-FP-A4BE-01 1 3644706 3644706 C - TP73 Frame_Shift_Del p.P335Lfs*10 0.33 TCGA-FP-A4BE-01 1 37346337 37346337 C T GRIK3 Missense_Mutation p.V150M 0.19 deleterious(0) possibly_damaging(0.76) TCGA-FP-A4BE-01 1 38409479 38409479 G A INPP5B Missense_Mutation p.T80M 0.49 tolerated(0.06) benign(0.105) TCGA-FP-A4BE-01 1 38512161 38512161 G A POU3F1 Silent p.A85A 0.50 TCGA-FP-A4BE-01 1 39827081 39827081 G A MACF1 Missense_Mutation p.R2106H 0.08 benign(0.008) TCGA-FP-A4BE-01 1 39879036 39879037 - C KIAA0754 Frame_Shift_Ins p.E901Rfs*190 0.48 TCGA-FP-A4BE-01 1 39888117 39888117 A G MACF1 Silent p.L3234L 0.23 TCGA-FP-A4BE-01 1 39914383 39914383 C T MACF1 Silent p.L4677L 0.19 TCGA-FP-A4BE-01 1 40129013 40129013 G A NT5C1A Missense_Mutation p.A176V 0.23 tolerated(0.14) benign(0.329) TCGA-FP-A4BE-01 1 40704193 40704193 A C RLF Silent p.S1273S 0.52 TCGA-FP-A4BE-01 1 40769618 40769618 G A COL9A2 Silent p.P450P 0.23 TCGA-FP-A4BE-01 1 41304261 41304261 A T KCNQ4 3'UTR 0.25 TCGA-FP-A4BE-01 1 43110402 43110402 A - CCDC30 Frame_Shift_Del p.N606Ifs*12 0.12 TCGA-FP-A4BE-01 1 43634636 43634636 G A EBNA1BP2 Nonsense_Mutation p.R226* 0.20 TCGA-FP-A4BE-01 1 43652399 43652399 A G WDR65 Missense_Mutation p.N331D 0.22 tolerated(0.14) benign(0.005) TCGA-FP-A4BE-01 1 43890022 43890022 G A SZT2 Missense_Mutation p.R797H 0.19 deleterious(0) probably_damaging(0.994) TCGA-FP-A4BE-01 1 43917505 43917505 T C HYI Silent p.L173L 0.44 TCGA-FP-A4BE-01 1 44083122 44083122 G A PTPRF Missense_Mutation p.D1360N 0.49 deleterious(0) probably_damaging(0.949) TCGA-FP-A4BE-01 1 44386553 44386553 G A ST3GAL3 Missense_Mutation p.A400T 0.15 tolerated(0.45) possibly_damaging(0.637) TCGA-FP-A4BE-01 1 44432283 44432283 C T IPO13 Nonsense_Mutation p.R812* 0.36 TCGA-FP-A4BE-01 1 44442832 44442832 G A ATP6V0B Missense_Mutation p.V179M 0.44 deleterious(0) probably_damaging(0.991) TCGA-FP-A4BE-01 1 46159219 46159219 A G TMEM69 Missense_Mutation p.Q129R 0.27 deleterious(0) probably_damaging(0.966) TCGA-FP-A4BE-01 1 50659494 50659494 G A ELAVL4 Missense_Mutation p.G155S 0.26 deleterious(0.02) possibly_damaging(0.741) TCGA-FP-A4BE-01 1 52275032 52275032 C T NRD1 Missense_Mutation p.E717K 0.44 tolerated(0.13) benign(0.009) TCGA-FP-A4BE-01 1 53122723 53122723 A G FAM159A 3'UTR 0.19 TCGA-FP-A4BE-01 1 53544191 53544191 T C PODN Missense_Mutation p.Y385H 0.28 deleterious(0.04) probably_damaging(1) TCGA-FP-A4BE-01 1 54605384 54605384 C - CDCP2 Frame_Shift_Del p.E387Rfs*23 0.34 TCGA-FP-A4BE-01 1 55529119 55529119 C A PCSK9 Silent p.A647A 0.27 TCGA-FP-A4BE-01 1 55604663 55604663 A C USP24 Missense_Mutation p.I924S 0.22 deleterious(0.01) possibly_damaging(0.505) TCGA-FP-A4BE-01 1 57420486 57420486 G A C8B Missense_Mutation p.R136C 0.48 deleterious(0) probably_damaging(0.99) TCGA-FP-A4BE-01 1 5923253 5923253 C T NPHP4 3'UTR 0.41 TCGA-FP-A4BE-01 1 5964781 5964781 G A NPHP4 Missense_Mutation p.T680M 0.40 deleterious(0) probably_damaging(0.999) TCGA-FP-A4BE-01 1 6186673 6186673 C T CHD5 Missense_Mutation p.R1346H 0.21 deleterious(0) probably_damaging(0.999) TCGA-FP-A4BE-01 1 65303751 65303751 G A JAK1 Missense_Mutation p.R1002W 0.38 deleterious(0) probably_damaging(1) TCGA-FP-A4BE-01 1 6706012 6706012 T C DNAJC11 Missense_Mutation p.Q244R 0.21 deleterious(0.02) benign(0.334) TCGA-FP-A4BE-01 1 70385283 70385283 G T LRRC7 Intron 0.48 TCGA-FP-A4BE-01 1 70505179 70505179 G A LRRC7 Silent p.A1186A 0.51 TCGA-FP-A4BE-01 1 78340642 78340643 - T FAM73A Frame_Shift_Ins p.L599Ffs*6 0.33 TCGA-FP-A4BE-01 1 7887444 7887444 G A PER3 Missense_Mutation p.G811R 0.24 tolerated(0.1) probably_damaging(0.98) TCGA-FP-A4BE-01 1 8025395 8025395 C T PARK7 Silent p.T34T 0.17 TCGA-FP-A4BE-01 1 84408246 84408246 A G TTLL7 Missense_Mutation p.I208T 0.27 deleterious(0.04) possibly_damaging(0.854) TCGA-FP-A4BE-01 1 84815581 84815581 C T SAMD13 3'UTR 0.18 TCGA-FP-A4BE-01 1 87045205 87045205 C T CLCA4 Missense_Mutation p.T764I 0.19 tolerated(0.13) benign(0.039) TCGA-FP-A4BE-01 1 91739282 91739282 T G HFM1 Missense_Mutation p.E1253D 0.29 tolerated_low_confidence(0.27) benign(0.008) TCGA-FP-A4BE-01 1 92941611 92941611 C T GFI1 Missense_Mutation p.R415Q 0.10 tolerated(0.05) probably_damaging(0.913) TCGA-FP-A4BE-01 1 94586671 94586671 G A ABCA4 5'UTR 0.28 TCGA-FP-A4BE-01 1 94964360 94964360 C T ABCD3 Missense_Mutation p.R496C 0.17 tolerated(0.07) benign(0.013) TCGA-FP-A4BE-01 1 9630377 9630377 A G SLC25A33 Missense_Mutation p.N126D 0.18 tolerated(1) benign(0.004) TCGA-FP-A4BE-01 1 9795564 9795564 G A CLSTN1 Missense_Mutation p.T615M 0.44 deleterious(0) probably_damaging(0.999) TCGA-FP-A4BE-01 1 97981499 97981499 T C DPYD Splice_Site p.X509_splice 0.18 TCGA-FP-A4BE-01 1 9811556 9811556 G A CLSTN1 Silent p.D208D 0.15 TCGA-FP-A4BE-01 1 99470275 99470275 C T LPPR5 5'UTR 0.22 TCGA-FP-A4BE-01 20 10394116 10394116 G T MKKS Missense_Mutation p.P16Q 0.08 deleterious(0.01) possibly_damaging(0.495) TCGA-FP-A4BE-01 20 11903867 11903867 C T BTBD3 Silent p.R374R 0.48 TCGA-FP-A4BE-01 20 1426359 1426359 C T NSFL1C Missense_Mutation p.R303Q 0.23 deleterious(0) probably_damaging(0.996) TCGA-FP-A4BE-01 20 16253799 16253799 G - KIF16B 3'UTR 0.10 TCGA-FP-A4BE-01 20 16316624 16316624 G A KIF16B Missense_Mutation p.R405C 0.46 deleterious(0) probably_damaging(1) TCGA-FP-A4BE-01 20 16488710 16488710 C T KIF16B Missense_Mutation p.V198I 0.22 tolerated(0.22) benign(0.323) TCGA-FP-A4BE-01 20 17581675 17581675 T C DSTN Missense_Mutation p.L99S 0.22 deleterious(0) probably_damaging(0.995) TCGA-FP-A4BE-01 20 18286334 18286334 G A ZNF133 Missense_Mutation p.A2T 0.47 tolerated(0.52) benign(0.331) TCGA-FP-A4BE-01 20 18297297 18297297 C T ZNF133 Missense_Mutation p.T600M 0.39 deleterious(0) benign(0.003) TCGA-FP-A4BE-01 20 2290323 2290323 A G TGM3 Missense_Mutation p.N10D 0.25 tolerated(1) benign(0.014) TCGA-FP-A4BE-01 20 25493544 25493544 G A NINL Missense_Mutation p.R126C 0.26 tolerated(0.2) benign(0.001) TCGA-FP-A4BE-01 20 30065686 30065686 C T REM1 Silent p.V132V 0.21 TCGA-FP-A4BE-01 20 30785099 30785099 C T PLAGL2 Missense_Mutation p.R216H 0.47 tolerated(0.2) probably_damaging(0.976) TCGA-FP-A4BE-01 20 30789952 30789952 G - PLAGL2 Frame_Shift_Del p.W11Gfs*15 0.33 TCGA-FP-A4BE-01 20 3193862 3193863 - A ITPA Frame_Shift_Ins p.I40Nfs*2 0.25 TCGA-FP-A4BE-01 20 32224505 32224505 A - CBFA2T2 Frame_Shift_Del p.T441Qfs*5 0.21 TCGA-FP-A4BE-01 20 32302516 32302516 T C PXMP4 Missense_Mutation p.H47R 0.06 deleterious(0) probably_damaging(0.999) TCGA-FP-A4BE-01 20 32880296 32880296 C T AHCY Missense_Mutation p.E105K 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.727) TCGA-FP-A4BE-01 20 33330707 33330707 G A NCOA6 Missense_Mutation p.P1118L 0.38 benign(0.001) TCGA-FP-A4BE-01 20 33345538 33345538 A G NCOA6 Missense_Mutation p.M338T 0.25 benign(0.101) TCGA-FP-A4BE-01 20 36770586 36770586 C T TGM2 Missense_Mutation p.G292D 0.23 deleterious(0) probably_damaging(1) TCGA-FP-A4BE-01 20 3678732 3678732 G T SIGLEC1 Missense_Mutation p.A612D 0.37 tolerated(0.07) benign(0.446) TCGA-FP-A4BE-01 20 368830 368830 C T TRIB3 Missense_Mutation p.A59V 0.43 tolerated(0.28) benign(0.004) TCGA-FP-A4BE-01 20 36932553 36932553 C T BPI 5'UTR 0.44 TCGA-FP-A4BE-01 20 37353257 37353257 G A SLC32A1 5'UTR 0.29 TCGA-FP-A4BE-01 20 37353383 37353383 C T SLC32A1 Missense_Mutation p.R6C 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.65) TCGA-FP-A4BE-01 20 376933 376933 G A TRIB3 Missense_Mutation p.V226M 0.57 deleterious(0) probably_damaging(1) TCGA-FP-A4BE-01 20 39788754 39788754 G A PLCG1 Missense_Mutation p.R158Q 0.43 deleterious(0.02) benign(0.011) TCGA-FP-A4BE-01 20 42088688 42088688 G T SRSF6 Missense_Mutation p.A133S 0.22 deleterious(0.01) probably_damaging(1) TCGA-FP-A4BE-01 20 43552846 43552846 C T PABPC1L Silent p.D307D 0.17 TCGA-FP-A4BE-01 20 43927168 43927168 C T MATN4 Silent p.V356V 0.37 TCGA-FP-A4BE-01 20 44171452 44171452 C A EPPIN Missense_Mutation p.W93L 0.06 deleterious(0) probably_damaging(0.999) TCGA-FP-A4BE-01 20 44506623 44506623 G A ZSWIM3 Missense_Mutation p.A476T 0.22 tolerated(0.54) benign(0.015) TCGA-FP-A4BE-01 20 44507469 44507469 T C ZSWIM3 3'UTR 0.30 TCGA-FP-A4BE-01 20 44523667 44523668 - C CTSA Frame_Shift_Ins p.C349Lfs*56 0.37 TCGA-FP-A4BE-01 20 44589289 44589289 G A ZNF335 Missense_Mutation p.T583M 0.50 deleterious(0) probably_damaging(0.998) TCGA-FP-A4BE-01 20 45192166 45192166 G - SLC13A3 Frame_Shift_Del p.L507Cfs*3 0.29 TCGA-FP-A4BE-01 20 46318966 46318966 C A SULF2 Missense_Mutation p.R214M 0.27 deleterious(0) probably_damaging(0.996) TCGA-FP-A4BE-01 20 47858673 47858673 G A DDX27 Silent p.R713R 0.23 TCGA-FP-A4BE-01 20 4837592 4837592 G A SLC23A2 3'UTR 0.21 TCGA-FP-A4BE-01 20 48699193 48699193 C T UBE2V1 3'UTR 0.48 TCGA-FP-A4BE-01 20 49576279 49576279 C T MOCS3 Silent p.C300C 0.25 TCGA-FP-A4BE-01 20 50048652 50048652 C - NFATC2 Frame_Shift_Del p.V892* 0.29 TCGA-FP-A4BE-01 20 50287727 50287727 G A ATP9A Silent p.P369P 0.29 TCGA-FP-A4BE-01 20 52790142 52790142 G A CYP24A1 5'UTR 0.32 TCGA-FP-A4BE-01 20 54824419 54824419 G A MC3R Missense_Mutation p.V174I 0.44 tolerated(0.86) benign(0.027) TCGA-FP-A4BE-01 20 56099011 56099011 G A CTCFL Missense_Mutation p.T84M 0.45 tolerated(0.05) benign(0.146) TCGA-FP-A4BE-01 20 57244419 57244419 C T STX16 Missense_Mutation p.R156W 0.23 deleterious(0) possibly_damaging(0.766) TCGA-FP-A4BE-01 20 57429071 57429071 G A GNAS Missense_Mutation p.G251S 0.18 tolerated_low_confidence(0.32) unknown(0) TCGA-FP-A4BE-01 20 57766219 57766219 G C ZNF831 Missense_Mutation p.A49P 0.29 deleterious(0.03) benign(0.029) TCGA-FP-A4BE-01 20 57768358 57768358 C - ZNF831 Frame_Shift_Del p.P763Qfs*11 0.49 TCGA-FP-A4BE-01 20 60892478 60892478 C T LAMA5 Silent p.A2478A 0.39 TCGA-FP-A4BE-01 20 61386229 61386229 C T NTSR1 Missense_Mutation p.R303C 0.26 deleterious(0.02) possibly_damaging(0.51) TCGA-FP-A4BE-01 20 61467614 61467614 G A COL9A3 Missense_Mutation p.G493R 0.41 deleterious(0) probably_damaging(1) TCGA-FP-A4BE-01 20 61511147 61511147 G A DIDO1 Missense_Mutation p.A2054V 0.22 benign(0.089) TCGA-FP-A4BE-01 20 62226976 62226976 G A GMEB2 Silent p.P202P 0.27 TCGA-FP-A4BE-01 20 62321432 62321432 C - RTEL1 Intron 0.21 TCGA-FP-A4BE-01 20 62373773 62373773 C T SLC2A4RG Silent p.D255D 0.33 TCGA-FP-A4BE-01 20 62500675 62500675 G T TPD52L2 Missense_Mutation p.G16C 0.15 deleterious(0) probably_damaging(0.98) TCGA-FP-A4BE-01 20 62680316 62680316 C A SOX18 Splice_Site p.X120_splice 0.45 TCGA-FP-A4BE-01 20 62705236 62705237 - A RGS19 Frame_Shift_Ins p.Q208Hfs*109 0.24 TCGA-FP-A4BE-01 20 7964446 7964446 C T TMX4 Missense_Mutation p.R225H 0.43 tolerated(0.52) benign(0.001) TCGA-FP-A4BE-01 21 11047547 11047547 T G BAGE2 RNA 0.06 TCGA-FP-A4BE-01 21 16338717 16338717 T C NRIP1 Silent p.S599S 0.28 TCGA-FP-A4BE-01 21 19666606 19666606 C T TMPRSS15 Missense_Mutation p.A823T 0.11 deleterious(0) probably_damaging(1) TCGA-FP-A4BE-01 21 27423345 27423346 - C APP Frame_Shift_Ins p.G212Rfs*11 0.24 TCGA-FP-A4BE-01 21 27938592 27938592 T C CYYR1 Missense_Mutation p.I57V 0.29 tolerated(1) benign(0.008) TCGA-FP-A4BE-01 21 34131455 34131455 C T PAXBP1 Missense_Mutation p.R440Q 0.30 tolerated(0.7) benign(0.007) TCGA-FP-A4BE-01 21 37665661 37665661 C T DOPEY2 Missense_Mutation p.P2230L 0.39 tolerated(0.66) probably_damaging(1) TCGA-FP-A4BE-01 21 38853059 38853059 A - DYRK1A Frame_Shift_Del p.N151Tfs*14 0.18 TCGA-FP-A4BE-01 21 40578077 40578077 G A BRWD1 Missense_Mutation p.R1441W 0.28 deleterious(0) possibly_damaging(0.549) TCGA-FP-A4BE-01 21 40685223 40685223 G T BRWD1 Missense_Mutation p.L18M 0.52 deleterious(0) probably_damaging(0.969) TCGA-FP-A4BE-01 21 41151084 41151084 T C IGSF5 Silent p.P262P 0.28 TCGA-FP-A4BE-01 21 42817381 42817381 C T MX1 Silent p.L339L 0.31 TCGA-FP-A4BE-01 21 43411985 43411985 G A ZBTB21 Silent p.H740H 0.29 TCGA-FP-A4BE-01 21 43531622 43531622 G A UMODL1 Missense_Mutation p.G764R 0.31 tolerated(0.62) probably_damaging(0.979) TCGA-FP-A4BE-01 21 43863426 43863426 G A UBASH3A Missense_Mutation p.A546T 0.27 tolerated(0.76) benign(0.032) TCGA-FP-A4BE-01 21 44323850 44323850 C T NDUFV3 Missense_Mutation p.A243V 0.21 deleterious(0.02) benign(0.177) TCGA-FP-A4BE-01 21 45708227 45708227 G T AIRE Splice_Site p.X180_splice 0.13 TCGA-FP-A4BE-01 21 45713760 45713760 G A AIRE Missense_Mutation p.R456H 0.33 tolerated(0.51) benign(0.004) TCGA-FP-A4BE-01 21 47549244 47549244 G A COL6A2 Intron 0.35 TCGA-FP-A4BE-01 21 47552078 47552078 C T COL6A2 Missense_Mutation p.A891V 0.31 tolerated(0.45) benign(0.004) TCGA-FP-A4BE-01 21 47610970 47610970 T C LSS 3'UTR 0.38 TCGA-FP-A4BE-01 21 48068520 48068520 C T PRMT2 Missense_Mutation p.R160W 0.25 deleterious(0.01) possibly_damaging(0.846) TCGA-FP-A4BE-01 22 17072177 17072177 T - CCT8L2 Frame_Shift_Del p.M422Cfs*18 0.24 TCGA-FP-A4BE-01 22 18081008 18081008 T - ATP6V1E1 Frame_Shift_Del p.N161Tfs*17 0.12 TCGA-FP-A4BE-01 22 19511720 19511720 C - CLDN5 Frame_Shift_Del p.G105Vfs*2 0.39 TCGA-FP-A4BE-01 22 21363591 21363592 - G AC002472.1 5'Flank 0.24 TCGA-FP-A4BE-01 22 21385312 21385312 G T SLC7A4 Missense_Mutation p.P264T 0.33 deleterious(0) probably_damaging(0.987) TCGA-FP-A4BE-01 22 22277609 22277609 C T PPM1F Silent p.T407T 0.28 TCGA-FP-A4BE-01 22 23438508 23438508 G A GNAZ Missense_Mutation p.R209H 0.36 deleterious(0) probably_damaging(0.996) TCGA-FP-A4BE-01 22 24472130 24472130 C T CABIN1 Missense_Mutation p.T882M 0.26 tolerated(0.07) benign(0.003) TCGA-FP-A4BE-01 22 30416738 30416738 C T MTMR3 Silent p.R1030R 0.25 TCGA-FP-A4BE-01 22 31011360 31011360 G A TCN2 Missense_Mutation p.R218Q 0.34 tolerated(0.17) benign(0.01) TCGA-FP-A4BE-01 22 31737418 31737418 C A PATZ1 Intron 0.26 TCGA-FP-A4BE-01 22 36123049 36123049 C T APOL5 Nonsense_Mutation p.Q312* 0.28 TCGA-FP-A4BE-01 22 38120833 38120833 C A TRIOBP Missense_Mutation p.S757Y 0.32 deleterious_low_confidence(0) possibly_damaging(0.608) TCGA-FP-A4BE-01 22 38130633 38130633 G T TRIOBP Missense_Mutation p.Q1430H 0.26 deleterious_low_confidence(0.03) possibly_damaging(0.687) TCGA-FP-A4BE-01 22 38322040 38322040 G A MICALL1 Silent p.A485A 0.32 TCGA-FP-A4BE-01 22 38478747 38478747 G A SLC16A8 Missense_Mutation p.A45V 0.35 deleterious(0) benign(0.146) TCGA-FP-A4BE-01 22 38823979 38823979 C T KCNJ4 Silent p.T53T 0.33 TCGA-FP-A4BE-01 22 38934340 38934340 T - DMC1 Frame_Shift_Del p.K245Nfs*22 0.18 TCGA-FP-A4BE-01 22 39534654 39534654 C T CBX7 Missense_Mutation p.R78Q 0.18 deleterious(0) benign(0.309) TCGA-FP-A4BE-01 22 39627738 39627738 G A PDGFB Silent p.N115N 0.36 TCGA-FP-A4BE-01 22 40351855 40351855 G A GRAP2 Silent p.A37A 0.24 TCGA-FP-A4BE-01 22 41305152 41305152 C T XPNPEP3 Silent p.G294G 0.35 TCGA-FP-A4BE-01 22 42522927 42522927 C T CYP2D6 Missense_Mutation p.R414H 0.17 tolerated(0.31) benign(0.002) TCGA-FP-A4BE-01 22 43267310 43267310 T C PACSIN2 3'UTR 0.39 TCGA-FP-A4BE-01 22 46652619 46652619 T C PKDREJ Missense_Mutation p.R2201G 0.25 deleterious(0) probably_damaging(0.953) TCGA-FP-A4BE-01 22 50277971 50277971 C T ZBED4 Nonsense_Mutation p.R221* 0.29 TCGA-FP-A4BE-01 22 50280140 50280140 A G ZBED4 Missense_Mutation p.S944G 0.22 deleterious(0.04) benign(0.005) TCGA-FP-A4BE-01 22 50616542 50616542 G A PANX2 Silent p.T467T 0.29 TCGA-FP-A4BE-01 22 50633392 50633392 C T TRABD Silent p.L115L 0.35 TCGA-FP-A4BE-01 22 50722294 50722294 T C PLXNB2 Missense_Mutation p.T797A 0.23 tolerated(0.64) benign(0.015) TCGA-FP-A4BE-01 22 51043431 51043431 T C MAPK8IP2 Silent p.P567P 0.24 TCGA-FP-A4BE-01 2 100022487 100022487 G A REV1 Missense_Mutation p.P899L 0.41 tolerated(0.15) benign(0.047) TCGA-FP-A4BE-01 2 10559958 10559958 C T HPCAL1 Silent p.H25H 0.28 TCGA-FP-A4BE-01 2 10560154 10560154 G A HPCAL1 Missense_Mutation p.V91M 0.34 deleterious(0.01) possibly_damaging(0.471) TCGA-FP-A4BE-01 2 106497812 106497812 C T NCK2 Silent p.S85S 0.34 TCGA-FP-A4BE-01 2 107459882 107459882 G A ST6GAL2 Silent p.H184H 0.34 TCGA-FP-A4BE-01 2 107459971 107459971 C - ST6GAL2 Frame_Shift_Del p.E155Sfs*19 0.29 TCGA-FP-A4BE-01 2 109492820 109492820 T C CCDC138 3'UTR 0.31 TCGA-FP-A4BE-01 2 109513650 109513650 C T EDAR Missense_Mutation p.E354K 0.28 deleterious(0) probably_damaging(0.986) TCGA-FP-A4BE-01 2 110310708 110310708 G A SEPT10 Nonsense_Mutation p.R373* 0.27 TCGA-FP-A4BE-01 2 11052983 11052983 G A KCNF1 Missense_Mutation p.R144H 0.22 tolerated(0.06) benign(0.026) TCGA-FP-A4BE-01 2 112539946 112539946 C T ANAPC1 Silent p.K1734K 0.16 TCGA-FP-A4BE-01 2 11300785 11300785 C T PQLC3 Silent p.N87N 0.32 TCGA-FP-A4BE-01 2 113832281 113832282 TC - IL1F10 Intron 0.16 TCGA-FP-A4BE-01 2 114002179 114002179 G A PAX8 Missense_Mutation p.R72W 0.33 deleterious(0) probably_damaging(0.991) TCGA-FP-A4BE-01 2 118579781 118579781 G A DDX18 Missense_Mutation p.R337H 0.25 deleterious(0) probably_damaging(0.942) TCGA-FP-A4BE-01 2 11959685 11959685 C A LPIN1 Missense_Mutation p.N875K 0.21 deleterious(0.05) possibly_damaging(0.535) TCGA-FP-A4BE-01 2 119604427 119604427 A - EN1 Frame_Shift_Del p.F106Sfs*6 0.21 TCGA-FP-A4BE-01 2 119914245 119914245 G T C1QL2 3'UTR 0.40 TCGA-FP-A4BE-01 2 120712837 120712837 C T PTPN4 Missense_Mutation p.R640W 0.28 deleterious(0) possibly_damaging(0.465) TCGA-FP-A4BE-01 2 122488496 122488496 T - NIFK Frame_Shift_Del p.G180Efs*9 0.11 TCGA-FP-A4BE-01 2 12864843 12864843 C A TRIB2 Intron 0.25 TCGA-FP-A4BE-01 2 131688720 131688720 G A ARHGEF4 Missense_Mutation p.V64I 0.25 tolerated_low_confidence(0.65) benign(0) TCGA-FP-A4BE-01 2 131785563 131785563 T C ARHGEF4 Missense_Mutation p.V158A 0.10 tolerated(0.79) benign(0.001) TCGA-FP-A4BE-01 2 135743471 135743471 T - MAP3K19 Frame_Shift_Del p.M991Wfs*10 0.21 TCGA-FP-A4BE-01 2 139318420 139318420 A G SPOPL Missense_Mutation p.M254V 0.14 tolerated(0.07) possibly_damaging(0.471) TCGA-FP-A4BE-01 2 141806629 141806629 A G LRP1B Missense_Mutation p.F572S 0.32 possibly_damaging(0.637) TCGA-FP-A4BE-01 2 1437209 1437209 G T TPO Splice_Site p.X60_splice 0.34 TCGA-FP-A4BE-01 2 148657041 148657041 A - ACVR2A Frame_Shift_Del p.D96Tfs*54 0.32 TCGA-FP-A4BE-01 2 152404183 152404183 G A NEB Missense_Mutation p.R6743C 0.14 probably_damaging(1) TCGA-FP-A4BE-01 2 152468797 152468797 C A NEB Missense_Mutation p.R3903M 0.11 probably_damaging(0.979) TCGA-FP-A4BE-01 2 15618355 15618356 - T NBAS Frame_Shift_Ins p.I381Nfs*4 0.37 TCGA-FP-A4BE-01 2 157185029 157185029 T - NR4A2 Frame_Shift_Del p.N294Mfs*7 0.20 TCGA-FP-A4BE-01 2 157407127 157407127 C T GPD2 Silent p.D280D 0.27 TCGA-FP-A4BE-01 2 15767186 15767186 A - DDX1 Frame_Shift_Del p.G537Dfs*30 0.14 TCGA-FP-A4BE-01 2 160803953 160803953 G A PLA2R1 Missense_Mutation p.A1276V 0.30 deleterious(0) probably_damaging(1) TCGA-FP-A4BE-01 2 164466016 164466016 G A FIGN 3'UTR 0.33 TCGA-FP-A4BE-01 2 166170516 166170516 C A SCN2A Silent p.A427A 0.30 TCGA-FP-A4BE-01 2 167055471 167055471 G A SCN9A Missense_Mutation p.A1882V 0.35 tolerated(0.05) possibly_damaging(0.74) TCGA-FP-A4BE-01 2 168102819 168102819 A G XIRP2 Silent p.Q1639Q 0.11 TCGA-FP-A4BE-01 2 169699563 169699563 A - NOSTRIN Frame_Shift_Del p.N191Tfs*9 0.33 TCGA-FP-A4BE-01 2 170135890 170135890 T C LRP2 Silent p.P519P 0.20 TCGA-FP-A4BE-01 2 171258106 171258106 C T MYO3B Silent p.D678D 0.31 TCGA-FP-A4BE-01 2 172017158 172017158 A G TLK1 5'UTR 0.33 TCGA-FP-A4BE-01 2 178481375 178481375 A - TTC30A 3'UTR 0.38 TCGA-FP-A4BE-01 2 17860182 17860182 G A SMC6 Missense_Mutation p.R952W 0.23 tolerated(0.19) benign(0.029) TCGA-FP-A4BE-01 2 179401955 179401955 G A TTN Missense_Mutation p.P33294L 0.26 TCGA-FP-A4BE-01 2 179427287 179427287 C T TTN Missense_Mutation p.V27858I 0.34 TCGA-FP-A4BE-01 2 179453422 179453422 C A TTN Missense_Mutation p.W21010C 0.26 TCGA-FP-A4BE-01 2 179501176 179501176 A G TTN Silent p.L13760L 0.28 TCGA-FP-A4BE-01 2 187698689 187698689 G A ZSWIM2 Missense_Mutation p.T271M 0.27 tolerated(0.13) possibly_damaging(0.782) TCGA-FP-A4BE-01 2 189899729 189899729 A C COL5A2 Silent p.A1422A 0.31 TCGA-FP-A4BE-01 2 197021326 197021327 - T STK17B Frame_Shift_Ins p.E58Rfs*28 0.18 TCGA-FP-A4BE-01 2 200213631 200213631 G A SATB2 Silent p.A322A 0.32 TCGA-FP-A4BE-01 2 200801175 200801175 C T TYW5 Missense_Mutation p.R176H 0.28 deleterious(0.03) possibly_damaging(0.713) TCGA-FP-A4BE-01 2 202438988 202438988 G A ALS2CR11 Silent p.L233L 0.24 TCGA-FP-A4BE-01 2 204281776 204281776 G A ABI2 Silent p.P408P 0.27 TCGA-FP-A4BE-01 2 204281787 204281787 G A ABI2 Missense_Mutation p.R412H 0.27 deleterious(0) probably_damaging(0.921) TCGA-FP-A4BE-01 2 207827304 207827304 A G CPO Missense_Mutation p.Y248C 0.24 deleterious(0.05) benign(0.359) TCGA-FP-A4BE-01 2 210561275 210561275 G T MAP2 Missense_Mutation p.R1397M 0.32 deleterious(0) probably_damaging(1) TCGA-FP-A4BE-01 2 21255320 21255320 C T APOB Missense_Mutation p.E420K 0.32 benign(0.202) TCGA-FP-A4BE-01 2 215646008 215646008 T - BARD1 Frame_Shift_Del p.K197Rfs*15 0.25 TCGA-FP-A4BE-01 2 216809715 216809715 A G MREG Silent p.R172R 0.35 TCGA-FP-A4BE-01 2 218751288 218751288 C T TNS1 Missense_Mutation p.M191I 0.37 deleterious(0.01) benign(0.202) TCGA-FP-A4BE-01 2 219612393 219612393 G A TTLL4 Missense_Mutation p.D775N 0.40 tolerated(0.09) benign(0.272) TCGA-FP-A4BE-01 2 219883864 219883864 G T CCDC108 Missense_Mutation p.L1171I 0.31 deleterious(0) probably_damaging(0.99) TCGA-FP-A4BE-01 2 220164709 220164709 C A PTPRN Missense_Mutation p.Q478H 0.27 deleterious(0.02) probably_damaging(0.918) TCGA-FP-A4BE-01 2 220471821 220471821 C T STK11IP Missense_Mutation p.T405M 0.30 deleterious(0) probably_damaging(0.999) TCGA-FP-A4BE-01 2 223559161 223559161 G - MOGAT1 Frame_Shift_Del p.G188Vfs*28 0.26 TCGA-FP-A4BE-01 2 224743374 224743374 G A WDFY1 3'UTR 0.41 TCGA-FP-A4BE-01 2 224866409 224866409 T C SERPINE2 Missense_Mutation p.D82G 0.36 tolerated(0.64) possibly_damaging(0.648) TCGA-FP-A4BE-01 2 227922236 227922236 C A COL4A4 Missense_Mutation p.G822C 0.35 probably_damaging(0.979) TCGA-FP-A4BE-01 2 228162445 228162445 G T COL4A3 Silent p.G1207G 0.33 TCGA-FP-A4BE-01 2 230664071 230664071 G A TRIP12 Nonsense_Mutation p.R1004* 0.30 TCGA-FP-A4BE-01 2 231657993 231657993 T C CAB39 Silent p.P115P 0.24 TCGA-FP-A4BE-01 2 231742260 231742260 G A ITM2C Missense_Mutation p.R236Q 0.29 tolerated(0.35) benign(0.063) TCGA-FP-A4BE-01 2 232952237 232952237 C T DIS3L2 Missense_Mutation p.A136V 0.40 tolerated(0.38) benign(0.006) TCGA-FP-A4BE-01 2 234463061 234463061 A G USP40 Missense_Mutation p.C232R 0.33 deleterious(0) probably_damaging(1) TCGA-FP-A4BE-01 2 238303252 238303252 C T COL6A3 Silent p.T229T 0.28 TCGA-FP-A4BE-01 2 238672661 238672661 C A LRRFIP1 Missense_Mutation p.L769I 0.37 tolerated(0.14) benign(0.045) TCGA-FP-A4BE-01 2 238727159 238727159 A G RBM44 Missense_Mutation p.T534A 0.36 tolerated(0.72) benign(0.013) TCGA-FP-A4BE-01 2 239010707 239010707 G A ESPNL Silent p.P140P 0.47 TCGA-FP-A4BE-01 2 239013340 239013340 C A ESPNL Missense_Mutation p.L177M 0.20 deleterious(0.01) probably_damaging(0.989) TCGA-FP-A4BE-01 2 241452261 241452261 G A ANKMY1 Silent p.D612D 0.33 TCGA-FP-A4BE-01 2 241463559 241463559 C T ANKMY1 Silent p.P436P 0.27 TCGA-FP-A4BE-01 2 242066640 242066640 T G PASK Missense_Mutation p.M564L 0.26 tolerated(0.82) benign(0.001) TCGA-FP-A4BE-01 2 24980874 24980874 C T NCOA1 Missense_Mutation p.T1305M 0.28 tolerated(0.25) benign(0.071) TCGA-FP-A4BE-01 2 25462049 25462049 T C DNMT3A Silent p.S786S 0.15 TCGA-FP-A4BE-01 2 25497874 25497874 G A DNMT3A Missense_Mutation p.A192V 0.36 deleterious(0.02) probably_damaging(0.996) TCGA-FP-A4BE-01 2 25602160 25602160 T C DTNB Intron 0.17 TCGA-FP-A4BE-01 2 27302084 27302084 C T EMILIN1 Missense_Mutation p.R51W 0.39 possibly_damaging(0.847) TCGA-FP-A4BE-01 2 27445143 27445143 C A CAD Missense_Mutation p.P145H 0.26 tolerated(0.07) benign(0.022) TCGA-FP-A4BE-01 2 27558815 27558815 C T GTF3C2 Missense_Mutation p.G479E 0.20 deleterious(0) probably_damaging(0.943) TCGA-FP-A4BE-01 2 27565828 27565828 C T GTF3C2 Missense_Mutation p.R145Q 0.36 tolerated(0.12) benign(0.007) TCGA-FP-A4BE-01 2 27665348 27665348 G A KRTCAP3 Intron 0.38 TCGA-FP-A4BE-01 2 29117732 29117732 G A WDR43 Silent p.A56A 0.32 TCGA-FP-A4BE-01 2 31806015 31806015 C T SRD5A2 RNA 0.33 TCGA-FP-A4BE-01 2 32641161 32641161 T C BIRC6 Silent p.T934T 0.19 TCGA-FP-A4BE-01 2 3599769 3599769 G A RNASEH1 Missense_Mutation p.A125V 0.32 tolerated(0.44) benign(0.004) TCGA-FP-A4BE-01 2 37096869 37096872 CTAT - STRN Frame_Shift_Del p.I442Qfs*7 0.26 TCGA-FP-A4BE-01 2 37439103 37439103 T C CEBPZ Missense_Mutation p.N895D 0.24 tolerated(1) benign(0.002) TCGA-FP-A4BE-01 2 39222340 39222340 C T SOS1 Silent p.P1090P 0.25 TCGA-FP-A4BE-01 2 42578285 42578285 A T COX7A2L 3'UTR 0.41 TCGA-FP-A4BE-01 2 46228617 46228617 G A PRKCE Missense_Mutation p.A300T 0.31 deleterious(0) possibly_damaging(0.803) TCGA-FP-A4BE-01 2 50149258 50149258 A G NRXN1 Missense_Mutation p.Y1490H 0.15 tolerated(0.07) probably_damaging(0.999) TCGA-FP-A4BE-01 2 54122748 54122748 T - PSME4 Frame_Shift_Del p.T1272Lfs*31 0.20 TCGA-FP-A4BE-01 2 55561248 55561248 C T CCDC88A Silent p.T903T 0.15 TCGA-FP-A4BE-01 2 55561544 55561544 T - CCDC88A Frame_Shift_Del p.I805Yfs*6 0.23 TCGA-FP-A4BE-01 2 55771159 55771161 AGA GG CCDC104 Frame_Shift_Del p.D243Afs*2 0.28 TCGA-FP-A4BE-01 2 55813848 55813848 C - SMEK2 Frame_Shift_Del p.C341Lfs*31 0.20 TCGA-FP-A4BE-01 2 5833214 5833214 C T SOX11 Missense_Mutation p.R121W 0.25 deleterious(0) probably_damaging(0.948) TCGA-FP-A4BE-01 2 61014116 61014116 G A PAPOLG Missense_Mutation p.V401I 0.32 tolerated(0.37) possibly_damaging(0.656) TCGA-FP-A4BE-01 2 65541259 65541259 G C SPRED2 Missense_Mutation p.D211E 0.27 tolerated(0.59) benign(0.017) TCGA-FP-A4BE-01 2 68691370 68691370 C - FBXO48 Frame_Shift_Del p.E147Kfs*3 0.22 TCGA-FP-A4BE-01 2 70408715 70408715 G A C2orf42 Missense_Mutation p.H135Y 0.21 deleterious(0) probably_damaging(0.97) TCGA-FP-A4BE-01 2 70408874 70408874 G T C2orf42 Silent p.R82R 0.28 TCGA-FP-A4BE-01 2 71576484 71576484 C T ZNF638 Missense_Mutation p.R134C 0.33 deleterious(0) probably_damaging(0.999) TCGA-FP-A4BE-01 2 71892324 71892324 G A DYSF Missense_Mutation p.R1736H 0.30 deleterious(0.02) benign(0.008) TCGA-FP-A4BE-01 2 71909728 71909728 G A DYSF Missense_Mutation p.R2081H 0.30 deleterious(0.02) probably_damaging(0.967) TCGA-FP-A4BE-01 2 73446046 73446046 C T SMYD5 Missense_Mutation p.R52W 0.26 deleterious(0) probably_damaging(0.94) TCGA-FP-A4BE-01 2 74593976 74593976 C A DCTN1 Missense_Mutation p.K800N 0.24 deleterious(0.01) probably_damaging(0.972) TCGA-FP-A4BE-01 2 74733085 74733085 C T PCGF1 Missense_Mutation p.R175Q 0.25 tolerated(0.43) benign(0.078) TCGA-FP-A4BE-01 2 74753890 74753890 G A AUP1 3'UTR 0.35 TCGA-FP-A4BE-01 2 85628410 85628410 C T CAPG Missense_Mutation p.A132T 0.26 tolerated(0.74) benign(0.001) TCGA-FP-A4BE-01 2 95753233 95753233 G - MRPS5 Frame_Shift_Del p.R388Gfs*4 0.27 TCGA-FP-A4BE-01 2 97025921 97025921 A - NCAPH Frame_Shift_Del p.D469Ifs*25 0.24 TCGA-FP-A4BE-01 2 98341694 98341694 C T ZAP70 Missense_Mutation p.A181V 0.33 tolerated(0.21) benign(0.11) TCGA-FP-A4BE-01 2 98355903 98355903 C T ZAP70 Missense_Mutation p.A601V 0.24 tolerated_low_confidence(0.25) benign(0.314) TCGA-FP-A4BE-01 2 99226437 99226438 AG - UNC50 Frame_Shift_Del p.Q72Hfs*9 0.16 TCGA-FP-A4BE-01 2 99936110 99936110 A - TXNDC9 3'UTR 0.33 TCGA-FP-A4BE-01 3 100569516 100569516 T C ABI3BP Missense_Mutation p.R430G 0.27 deleterious(0.04) benign(0.152) TCGA-FP-A4BE-01 3 100992453 100992453 T C IMPG2 Missense_Mutation p.Q267R 0.35 tolerated(0.11) benign(0.022) TCGA-FP-A4BE-01 3 10382299 10382299 C T ATP2B2 Missense_Mutation p.V1003I 0.22 deleterious(0.01) probably_damaging(0.997) TCGA-FP-A4BE-01 3 108405333 108405333 C T DZIP3 Silent p.D1017D 0.16 TCGA-FP-A4BE-01 3 108672544 108672544 C T GUCA1C Nonsense_Mutation p.W22* 0.27 TCGA-FP-A4BE-01 3 11060285 11060285 C T SLC6A1 Silent p.G124G 0.15 TCGA-FP-A4BE-01 3 112326068 112326068 C T CCDC80 Missense_Mutation p.V821I 0.16 tolerated(0.16) benign(0.031) TCGA-FP-A4BE-01 3 113755558 113755558 T - KIAA1407 Frame_Shift_Del p.N164Mfs*3 0.25 TCGA-FP-A4BE-01 3 119176971 119176971 A G TMEM39A Missense_Mutation p.F77S 0.11 tolerated(0.23) benign(0.434) TCGA-FP-A4BE-01 3 120499907 120499907 G A GTF2E1 Missense_Mutation p.A304T 0.18 tolerated(0.42) benign(0) TCGA-FP-A4BE-01 3 122437344 122437344 T C PARP14 Missense_Mutation p.L1449P 0.25 deleterious(0) probably_damaging(0.954) TCGA-FP-A4BE-01 3 122829827 122829827 C T PDIA5 Missense_Mutation p.L173F 0.46 deleterious(0.03) possibly_damaging(0.551) TCGA-FP-A4BE-01 3 123333119 123333119 C T MYLK Missense_Mutation p.D1860N 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-FP-A4BE-01 3 12560653 12560653 G T TSEN2 Missense_Mutation p.K352N 0.33 deleterious(0) probably_damaging(1) TCGA-FP-A4BE-01 3 126138498 126138499 AG - CCDC37 Frame_Shift_Del p.D251Hfs*9 0.34 TCGA-FP-A4BE-01 3 12626080 12626080 C T RAF1 Missense_Mutation p.R627Q 0.23 tolerated(0.07) probably_damaging(0.98) TCGA-FP-A4BE-01 3 126708374 126708374 A G PLXNA1 Missense_Mutation p.Q313R 0.44 tolerated(0.05) probably_damaging(0.999) TCGA-FP-A4BE-01 3 12777078 12777078 G - TMEM40 Frame_Shift_Del p.L220Sfs*7 0.17 TCGA-FP-A4BE-01 3 127774574 127774574 T A SEC61A1 Missense_Mutation p.V67E 0.24 deleterious(0.02) possibly_damaging(0.765) TCGA-FP-A4BE-01 3 128339252 128339252 G T RPN1 3'UTR 0.26 TCGA-FP-A4BE-01 3 130285959 130285959 C T COL6A6 Nonsense_Mutation p.R566* 0.41 TCGA-FP-A4BE-01 3 130737545 130737545 G A ASTE1 Missense_Mutation p.R440W 0.18 deleterious(0) probably_damaging(1) TCGA-FP-A4BE-01 3 133647095 133647095 C A C3orf36 3'UTR 0.32 TCGA-FP-A4BE-01 3 133673823 133673823 C T SLCO2A1 Silent p.S204S 0.49 TCGA-FP-A4BE-01 3 134080614 134080614 G A AMOTL2 Nonsense_Mutation p.R439* 0.41 TCGA-FP-A4BE-01 3 134514399 134514399 C T EPHB1 5'UTR 0.10 TCGA-FP-A4BE-01 3 137790505 137790505 T C DZIP1L Missense_Mutation p.Q532R 0.22 tolerated(0.29) benign(0.011) TCGA-FP-A4BE-01 3 137880857 137880857 C A DBR1 Missense_Mutation p.E503D 0.13 tolerated(0.27) benign(0.001) TCGA-FP-A4BE-01 3 138474615 138474615 A G PIK3CB Silent p.I126I 0.24 TCGA-FP-A4BE-01 3 138664355 138664355 G A FOXL2 3'UTR 0.42 TCGA-FP-A4BE-01 3 140178590 140178590 C A CLSTN2 Missense_Mutation p.L401I 0.39 tolerated(0.08) possibly_damaging(0.836) TCGA-FP-A4BE-01 3 140419874 140419874 C T TRIM42 3'UTR 0.23 TCGA-FP-A4BE-01 3 141682772 141682772 G A TFDP2 Nonsense_Mutation p.R256* 0.48 TCGA-FP-A4BE-01 3 142443437 142443437 G A TRPC1 Silent p.S12S 0.19 TCGA-FP-A4BE-01 3 14535243 14535243 C T SLC6A6 3'Flank 0.29 TCGA-FP-A4BE-01 3 145799625 145799625 G A PLOD2 Missense_Mutation p.R420C 0.44 deleterious(0) benign(0.133) TCGA-FP-A4BE-01 3 150460455 150460455 G A SIAH2 Missense_Mutation p.H150Y 0.26 tolerated(1) benign(0.021) TCGA-FP-A4BE-01 3 154145430 154145430 A C GPR149 Missense_Mutation p.L350R 0.19 deleterious(0.01) probably_damaging(1) TCGA-FP-A4BE-01 3 156260985 156260985 A G SSR3 3'UTR 0.19 TCGA-FP-A4BE-01 3 156261014 156261014 A - SSR3 Frame_Shift_Del p.L179Pfs*99 0.16 TCGA-FP-A4BE-01 3 158415580 158415580 G A RARRES1 Missense_Mutation p.P258S 0.26 deleterious(0.02) probably_damaging(0.998) TCGA-FP-A4BE-01 3 160021774 160021774 C T IFT80 Silent p.T360T 0.16 TCGA-FP-A4BE-01 3 160958887 160958887 C T NMD3 Silent p.N269N 0.45 TCGA-FP-A4BE-01 3 165548207 165548207 C A BCHE Missense_Mutation p.W205C 0.40 deleterious(0) probably_damaging(1) TCGA-FP-A4BE-01 3 172365825 172365826 - T NCEH1 Frame_Shift_Ins p.S105Kfs*16 0.36 TCGA-FP-A4BE-01 3 173322630 173322630 T A NLGN1 Missense_Mutation p.L81H 0.08 deleterious(0) possibly_damaging(0.853) TCGA-FP-A4BE-01 3 176769342 176769342 T - TBL1XR1 Frame_Shift_Del p.N126Mfs*16 0.33 TCGA-FP-A4BE-01 3 183665245 183665245 G A ABCC5 Missense_Mutation p.A1094V 0.56 deleterious(0) possibly_damaging(0.884) TCGA-FP-A4BE-01 3 183888136 183888136 G A DVL3 Missense_Mutation p.G582S 0.32 tolerated(0.32) probably_damaging(0.961) TCGA-FP-A4BE-01 3 183906045 183906045 G A ABCF3 Missense_Mutation p.R229Q 0.21 tolerated(0.45) benign(0.044) TCGA-FP-A4BE-01 3 18390697 18390697 C A SATB1 Nonsense_Mutation p.G785* 0.08 TCGA-FP-A4BE-01 3 18391077 18391077 G - SATB1 Frame_Shift_Del p.P658Hfs*81 0.22 TCGA-FP-A4BE-01 3 183976100 183976100 G T ECE2 Intron 0.21 TCGA-FP-A4BE-01 3 184009927 184009927 C T ECE2 Silent p.R851R 0.17 TCGA-FP-A4BE-01 3 184042726 184042726 C T EIF4G1 Missense_Mutation p.R901C 0.44 deleterious(0.01) benign(0.219) TCGA-FP-A4BE-01 3 184049322 184049322 G T EIF4G1 Missense_Mutation p.E1448D 0.24 tolerated(0.29) benign(0.011) TCGA-FP-A4BE-01 3 184060628 184060628 T C FAM131A Missense_Mutation p.F202S 0.21 deleterious(0.03) probably_damaging(0.959) TCGA-FP-A4BE-01 3 185390367 185390367 G A IGF2BP2 Missense_Mutation p.R388C 0.13 tolerated(0.18) possibly_damaging(0.855) TCGA-FP-A4BE-01 3 188327501 188327501 C T LPP Missense_Mutation p.R328W 0.27 deleterious(0.02) possibly_damaging(0.634) TCGA-FP-A4BE-01 3 189681886 189681886 G A LEPREL1 Missense_Mutation p.A632V 0.13 deleterious(0) probably_damaging(0.928) TCGA-FP-A4BE-01 3 195474185 195474185 G A MUC4 Silent p.D5367D 0.14 TCGA-FP-A4BE-01 3 195590866 195590866 C T TNK2 3'UTR 0.29 TCGA-FP-A4BE-01 3 196387312 196387312 G A NRROS Silent p.P266P 0.20 TCGA-FP-A4BE-01 3 196664509 196664509 G A NCBP2 Missense_Mutation p.R91C 0.20 deleterious(0) probably_damaging(0.995) TCGA-FP-A4BE-01 3 196666260 196666260 G A NCBP2 Missense_Mutation p.T41M 0.54 deleterious(0.01) probably_damaging(0.946) TCGA-FP-A4BE-01 3 197408196 197408196 T C KIAA0226 Missense_Mutation p.Y745C 0.20 deleterious(0) probably_damaging(0.992) TCGA-FP-A4BE-01 3 19974992 19974992 T - EFHB Frame_Shift_Del p.E174Sfs*6 0.20 TCGA-FP-A4BE-01 3 23996119 23996119 C A NR1D2 Silent p.S36S 0.22 TCGA-FP-A4BE-01 3 2942504 2942504 G T CNTN4 Missense_Mutation p.R359L 0.30 deleterious(0.01) benign(0.157) TCGA-FP-A4BE-01 3 3137115 3137115 A G IL5RA Silent p.P241P 0.40 TCGA-FP-A4BE-01 3 37090086 37090086 C T MLH1 Nonsense_Mutation p.R659* 0.24 TCGA-FP-A4BE-01 3 38167356 38167356 G A ACAA1 Silent p.D338D 0.31 TCGA-FP-A4BE-01 3 39174731 39174731 G T TTC21A Missense_Mutation p.K924N 0.24 deleterious(0.01) possibly_damaging(0.461) TCGA-FP-A4BE-01 3 39227260 39227260 A G XIRP1 Missense_Mutation p.L1226P 0.29 tolerated(0.06) probably_damaging(0.998) TCGA-FP-A4BE-01 3 39374653 39374653 G A CCR8 Silent p.Q277Q 0.25 TCGA-FP-A4BE-01 3 39452430 39452430 G A RPSA Silent p.A146A 0.21 TCGA-FP-A4BE-01 3 42703070 42703070 G A ZBTB47 Missense_Mutation p.E523K 0.33 deleterious(0) unknown(0) TCGA-FP-A4BE-01 3 42727516 42727516 G A KLHL40 Missense_Mutation p.V136I 0.41 tolerated(1) benign(0.09) TCGA-FP-A4BE-01 3 42827616 42827616 A G HIGD1A Missense_Mutation p.Y60H 0.41 tolerated(0.07) benign(0.063) TCGA-FP-A4BE-01 3 42915829 42915829 G A CYP8B1 Missense_Mutation p.R494C 0.31 deleterious(0.01) possibly_damaging(0.908) TCGA-FP-A4BE-01 3 42916499 42916499 A G CYP8B1 Silent p.A270A 0.39 TCGA-FP-A4BE-01 3 43641899 43641899 C T ANO10 Missense_Mutation p.R105K 0.27 tolerated(0.23) benign(0.033) TCGA-FP-A4BE-01 3 44828026 44828026 C T KIF15 Missense_Mutation p.A200V 0.30 tolerated(0.25) possibly_damaging(0.561) TCGA-FP-A4BE-01 3 44955353 44955353 C T TGM4 3'UTR 0.17 TCGA-FP-A4BE-01 3 45527188 45527188 C T LARS2 Silent p.C341C 0.19 TCGA-FP-A4BE-01 3 45637325 45637325 G - LIMD1 Frame_Shift_Del p.G320Vfs*6 0.21 TCGA-FP-A4BE-01 3 46009038 46009038 C A FYCO1 Missense_Mutation p.Q596H 0.30 tolerated(0.12) benign(0.002) TCGA-FP-A4BE-01 3 46560368 46560368 T - LRRC2 3'UTR 0.53 TCGA-FP-A4BE-01 3 47043895 47043895 C T NBEAL2 Missense_Mutation p.T1729M 0.15 tolerated(0.07) benign(0.372) TCGA-FP-A4BE-01 3 47447275 47447275 G A PTPN23 Missense_Mutation p.R134Q 0.19 unknown(0) TCGA-FP-A4BE-01 3 47555198 47555198 A G ELP6 5'UTR 0.33 TCGA-FP-A4BE-01 3 47891389 47891389 G A DHX30 Missense_Mutation p.D1122N 0.36 tolerated(0.51) benign(0.067) TCGA-FP-A4BE-01 3 48605533 48605533 C T COL7A1 Missense_Mutation p.R2622Q 0.29 probably_damaging(0.965) TCGA-FP-A4BE-01 3 48690485 48690485 G A CELSR3 Missense_Mutation p.R1862W 0.36 tolerated(0.06) probably_damaging(0.988) TCGA-FP-A4BE-01 3 48955704 48955704 G A ARIH2OS 3'UTR 0.20 TCGA-FP-A4BE-01 3 49055245 49055245 C A DALRD3 Missense_Mutation p.Q173H 0.25 tolerated(0.21) benign(0.066) TCGA-FP-A4BE-01 3 49146401 49146401 C T USP19 Missense_Mutation p.R1417H 0.28 tolerated_low_confidence(0.48) benign(0.003) TCGA-FP-A4BE-01 3 49168416 49168416 G A LAMB2 Silent p.P294P 0.31 TCGA-FP-A4BE-01 3 49751243 49751243 G A RNF123 Missense_Mutation p.R941Q 0.24 tolerated(0.24) benign(0.153) TCGA-FP-A4BE-01 3 49764826 49764826 C T IP6K1 Missense_Mutation p.R352H 0.31 tolerated(0.39) possibly_damaging(0.594) TCGA-FP-A4BE-01 3 50099450 50099450 A - RBM6 Frame_Shift_Del p.K834Nfs*27 0.23 TCGA-FP-A4BE-01 3 50615293 50615293 C T HEMK1 Silent p.L217L 0.32 TCGA-FP-A4BE-01 3 51418508 51418508 C A DOCK3 Missense_Mutation p.P1871T 0.26 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FP-A4BE-01 3 51697262 51697262 G A RAD54L2 Silent p.S1410S 0.32 TCGA-FP-A4BE-01 3 52233281 52233281 C T ALAS1 Silent p.C8C 0.28 TCGA-FP-A4BE-01 3 52436395 52436395 C T BAP1 Missense_Mutation p.R700Q 0.46 tolerated(0.06) benign(0.357) TCGA-FP-A4BE-01 3 52437509 52437509 C T BAP1 Missense_Mutation p.R551H 0.33 tolerated(0.16) benign(0.004) TCGA-FP-A4BE-01 3 52554481 52554481 C T STAB1 Silent p.G1855G 0.24 TCGA-FP-A4BE-01 3 52729496 52729496 C T GLT8D1 Silent p.T251T 0.24 TCGA-FP-A4BE-01 3 52831901 52831901 C T ITIH3 Silent p.N206N 0.19 TCGA-FP-A4BE-01 3 53531458 53531458 G A CACNA1D Missense_Mutation p.R116Q 0.32 deleterious(0.01) probably_damaging(0.996) TCGA-FP-A4BE-01 3 53852082 53852082 G A CHDH Missense_Mutation p.R503W 0.30 deleterious(0) probably_damaging(0.999) TCGA-FP-A4BE-01 3 53911774 53911774 C T ACTR8 Missense_Mutation p.R137H 0.13 tolerated(0.56) probably_damaging(0.943) TCGA-FP-A4BE-01 3 57232250 57232250 T - HESX1 Frame_Shift_Del p.N178Ifs*10 0.41 TCGA-FP-A4BE-01 3 58416460 58416460 G A PDHB Silent p.G171G 0.29 TCGA-FP-A4BE-01 3 62189130 62189130 C T PTPRG Missense_Mutation p.A554V 0.33 tolerated(0.29) benign(0.002) TCGA-FP-A4BE-01 3 64579967 64579967 G A ADAMTS9 Silent p.H1441H 0.33 TCGA-FP-A4BE-01 3 66436701 66436701 A G LRIG1 Missense_Mutation p.I498T 0.29 tolerated(0.87) benign(0.145) TCGA-FP-A4BE-01 3 73111664 73111664 T C EBLN2 Silent p.G144G 0.31 TCGA-FP-A4BE-01 3 7340499 7340499 G A GRM7 Missense_Mutation p.D289N 0.33 deleterious(0.04) possibly_damaging(0.535) TCGA-FP-A4BE-01 3 77666779 77666779 G A ROBO2 Missense_Mutation p.V1153M 0.35 tolerated(0.09) possibly_damaging(0.623) TCGA-FP-A4BE-01 3 81586171 81586171 C T GBE1 Missense_Mutation p.R565Q 0.37 deleterious(0) probably_damaging(0.961) TCGA-FP-A4BE-01 3 8667942 8667942 A G SSUH2 Missense_Mutation p.L247S 0.31 deleterious(0) possibly_damaging(0.517) TCGA-FP-A4BE-01 3 88040619 88040619 A G HTR1F Silent p.S240S 0.28 TCGA-FP-A4BE-01 3 9798261 9798261 C T OGG1 Missense_Mutation p.T285M 0.25 tolerated(0.13) benign(0.001) TCGA-FP-A4BE-01 3 99513939 99513939 A G COL8A1 Silent p.P398P 0.09 TCGA-FP-A4BE-01 3 9979762 9979762 C T CRELD1 Silent p.P144P 0.27 TCGA-FP-A4BE-01 4 100125396 100125396 G A ADH6 Missense_Mutation p.R370C 0.30 deleterious(0.01) possibly_damaging(0.825) TCGA-FP-A4BE-01 4 100264115 100264115 G T ADH1C Missense_Mutation p.A222D 0.27 possibly_damaging(0.873) TCGA-FP-A4BE-01 4 100522853 100522853 T C MTTP Silent p.N442N 0.27 TCGA-FP-A4BE-01 4 1018877 1018877 G A FGFRL1 Silent p.P419P 0.41 TCGA-FP-A4BE-01 4 114436244 114436244 A G CAMK2D Missense_Mutation p.L267P 0.25 deleterious_low_confidence(0) benign(0.064) TCGA-FP-A4BE-01 4 119662116 119662116 A G SEC24D Missense_Mutation p.M691T 0.42 deleterious(0.02) probably_damaging(1) TCGA-FP-A4BE-01 4 122599047 122599047 A G ANXA5 Splice_Site p.X177_splice 0.35 TCGA-FP-A4BE-01 4 123855262 123855262 T C SPATA5 Silent p.I172I 0.42 TCGA-FP-A4BE-01 4 126372220 126372220 A C FAT4 Missense_Mutation p.K3350T 0.11 benign(0.155) TCGA-FP-A4BE-01 4 126408578 126408578 G A FAT4 Missense_Mutation p.V4299I 0.20 benign(0.002) TCGA-FP-A4BE-01 4 128816110 128816110 G T PLK4 Missense_Mutation p.M855I 0.21 tolerated(0.15) benign(0.001) TCGA-FP-A4BE-01 4 134072289 134072289 G T PCDH10 Missense_Mutation p.D332Y 0.25 deleterious(0) probably_damaging(1) TCGA-FP-A4BE-01 4 13610189 13610189 T - BOD1L1 Frame_Shift_Del p.V570* 0.43 TCGA-FP-A4BE-01 4 155530932 155530932 G A FGG Intron 0.25 TCGA-FP-A4BE-01 4 155539 155539 C T ZNF718 RNA 0.19 TCGA-FP-A4BE-01 4 155749137 155749137 C A RBM46 Missense_Mutation p.P507H 0.37 deleterious_low_confidence(0) possibly_damaging(0.455) TCGA-FP-A4BE-01 4 156274382 156274383 - T MAP9 Frame_Shift_Ins p.N497Kfs*6 0.21 TCGA-FP-A4BE-01 4 158254507 158254507 T C GRIA2 Splice_Site p.X385_splice 0.21 TCGA-FP-A4BE-01 4 159601673 159601673 C T ETFDH Missense_Mutation p.A30V 0.30 tolerated(0.34) benign(0.001) TCGA-FP-A4BE-01 4 1643124 1643124 G A FAM53A Missense_Mutation p.R365C 0.28 tolerated(0.27) benign(0) TCGA-FP-A4BE-01 4 1656811 1656811 C T FAM53A Missense_Mutation p.R259H 0.26 tolerated(0.13) probably_damaging(0.996) TCGA-FP-A4BE-01 4 166418824 166418824 T - CPE 3'UTR 0.32 TCGA-FP-A4BE-01 4 166964429 166964429 T C TLL1 Missense_Mutation p.I461T 0.34 tolerated(0.14) benign(0.018) TCGA-FP-A4BE-01 4 169138028 169138028 G A DDX60 3'UTR 0.47 TCGA-FP-A4BE-01 4 176573102 176573102 G A GPM6A Silent p.L142L 0.32 TCGA-FP-A4BE-01 4 1806119 1806119 G A FGFR3 Missense_Mutation p.G382R 0.36 tolerated(0.14) probably_damaging(0.925) TCGA-FP-A4BE-01 4 183721333 183721333 C T TENM3 Silent p.G2643G 0.35 TCGA-FP-A4BE-01 4 184570625 184570625 G A RWDD4 Missense_Mutation p.R154C 0.33 deleterious(0) probably_damaging(0.964) TCGA-FP-A4BE-01 4 185012301 185012301 T - ENPP6 3'UTR 0.26 TCGA-FP-A4BE-01 4 185606594 185606594 C A PRIMPOL Silent p.P376P 0.33 TCGA-FP-A4BE-01 4 186336496 186336496 C T UFSP2 Missense_Mutation p.R166H 0.21 tolerated(0.54) benign(0.191) TCGA-FP-A4BE-01 4 187086561 187086561 G A FAM149A Silent p.P369P 0.32 TCGA-FP-A4BE-01 4 1988168 1988168 C T NELFA Intron 0.35 TCGA-FP-A4BE-01 4 2307175 2307175 C T ZFYVE28 Missense_Mutation p.A298T 0.35 tolerated_low_confidence(0.25) benign(0.014) TCGA-FP-A4BE-01 4 2749545 2749545 C T TNIP2 Missense_Mutation p.R135H 0.34 deleterious(0) possibly_damaging(0.621) TCGA-FP-A4BE-01 4 2952780 2952780 A - NOP14 Intron 0.27 TCGA-FP-A4BE-01 4 2986250 2986251 - A GRK4 Frame_Shift_Ins p.S24Kfs*4 0.28 TCGA-FP-A4BE-01 4 30724271 30724271 C T PCDH7 Silent p.N409N 0.27 TCGA-FP-A4BE-01 4 30724750 30724750 A G PCDH7 Missense_Mutation p.E569G 0.21 deleterious(0) possibly_damaging(0.832) TCGA-FP-A4BE-01 4 3768788 3768788 C T ADRA2C Missense_Mutation p.S152L 0.29 deleterious(0) probably_damaging(0.999) TCGA-FP-A4BE-01 4 38916595 38916595 G A FAM114A1 Silent p.T282T 0.43 TCGA-FP-A4BE-01 4 39839729 39839729 T - PDS5A Frame_Shift_Del p.T1253Qfs*5 0.22 TCGA-FP-A4BE-01 4 40428019 40428019 C T RBM47 Missense_Mutation p.A562T 0.29 tolerated_low_confidence(0.33) benign(0.002) TCGA-FP-A4BE-01 4 420284 420284 A G ABCA11P RNA 0.27 TCGA-FP-A4BE-01 4 43032508 43032508 C T GRXCR1 Missense_Mutation p.T275M 0.25 tolerated(0.82) possibly_damaging(0.886) TCGA-FP-A4BE-01 4 46334689 46334689 A G GABRA2 Silent p.T66T 0.34 TCGA-FP-A4BE-01 4 4864884 4864884 G A MSX1 3'UTR 0.50 TCGA-FP-A4BE-01 4 5170044 5170044 C T STK32B Nonsense_Mutation p.R43* 0.20 TCGA-FP-A4BE-01 4 52895078 52895079 - A SGCB Frame_Shift_Ins p.Q147Sfs*19 0.18 TCGA-FP-A4BE-01 4 57193991 57193991 C A KIAA1211 3'UTR 0.24 TCGA-FP-A4BE-01 4 6578431 6578431 T A MAN2B2 Missense_Mutation p.S89T 0.34 tolerated(0.68) benign(0.252) TCGA-FP-A4BE-01 4 6598853 6598853 C A MAN2B2 Silent p.A357A 0.29 TCGA-FP-A4BE-01 4 66286254 66286255 - T EPHA5 Frame_Shift_Ins p.G478Rfs*26 0.25 TCGA-FP-A4BE-01 4 66467465 66467465 G A EPHA5 Silent p.T268T 0.36 TCGA-FP-A4BE-01 4 7043563 7043563 T - CCDC96 Frame_Shift_Del p.K368Rfs*5 0.24 TCGA-FP-A4BE-01 4 71844995 71844995 T - MOB1B Frame_Shift_Del p.F194Lfs*19 0.30 TCGA-FP-A4BE-01 4 73176817 73176817 G A ADAMTS3 Missense_Mutation p.T668M 0.28 deleterious(0) probably_damaging(0.991) TCGA-FP-A4BE-01 4 74357673 74357673 C T AFM Missense_Mutation p.R310C 0.31 tolerated(0.08) probably_damaging(0.984) TCGA-FP-A4BE-01 4 75040303 75040303 T G MTHFD2L Missense_Mutation p.V75G 0.10 deleterious(0.03) possibly_damaging(0.464) TCGA-FP-A4BE-01 4 80246788 80246788 G T NAA11 Silent p.R82R 0.29 TCGA-FP-A4BE-01 4 80328865 80328865 C T GK2 Missense_Mutation p.V164I 0.32 tolerated(0.11) benign(0.078) TCGA-FP-A4BE-01 4 8098833 8098833 C T ABLIM2 Missense_Mutation p.V111I 0.34 tolerated(0.57) benign(0.15) TCGA-FP-A4BE-01 4 81121307 81121308 - T PRDM8 Frame_Shift_Ins p.T27Yfs*11 0.26 TCGA-FP-A4BE-01 4 83793118 83793118 C T SEC31A Missense_Mutation p.R254H 0.14 deleterious(0.01) benign(0.009) TCGA-FP-A4BE-01 4 84374799 84374799 C A HELQ Missense_Mutation p.Q199H 0.11 deleterious(0) probably_damaging(0.995) TCGA-FP-A4BE-01 4 860756 860756 G A GAK Missense_Mutation p.P954S 0.09 tolerated(0.39) benign(0.004) TCGA-FP-A4BE-01 4 87967391 87967392 AA - AFF1 Frame_Shift_Del p.K38Rfs*5 0.20 TCGA-FP-A4BE-01 4 90170221 90170221 G A GPRIN3 Silent p.S347S 0.28 TCGA-FP-A4BE-01 4 96222780 96222780 C T UNC5C Missense_Mutation p.R156Q 0.28 tolerated(0.39) possibly_damaging(0.613) TCGA-FP-A4BE-01 4 983845 983845 C T SLC26A1 Silent p.T294T 0.29 TCGA-FP-A4BE-01 5 10261684 10261684 G A CCT5 Missense_Mutation p.A336T 0.27 tolerated(0.07) possibly_damaging(0.636) TCGA-FP-A4BE-01 5 1065523 1065523 C T SLC12A7 Missense_Mutation p.R771Q 0.26 tolerated(0.1) probably_damaging(0.991) TCGA-FP-A4BE-01 5 10748323 10748325 TCT - DAP In_Frame_Del p.E39del 0.39 TCGA-FP-A4BE-01 5 112363035 112363037 CTC - MCC In_Frame_Del p.E1008del 0.33 TCGA-FP-A4BE-01 5 114916738 114916738 T G TMED7-TICAM2 Missense_Mutation p.E241D 0.14 tolerated_low_confidence(0.27) benign(0.002) TCGA-FP-A4BE-01 5 118824919 118824919 G A HSD17B4 Missense_Mutation p.A244T 0.35 deleterious(0.01) benign(0.429) TCGA-FP-A4BE-01 5 121187858 121187858 G A FTMT Missense_Mutation p.R67Q 0.25 tolerated(1) benign(0) TCGA-FP-A4BE-01 5 122151619 122151619 A G SNX2 Missense_Mutation p.T251A 0.36 tolerated(0.35) benign(0.002) TCGA-FP-A4BE-01 5 1253879 1253879 C T TERT Silent p.P1121P 0.20 TCGA-FP-A4BE-01 5 127664437 127664437 G A FBN2 Silent p.C1474C 0.25 TCGA-FP-A4BE-01 5 128441080 128441083 AAGT - ISOC1 Splice_Site p.X211_splice 0.17 TCGA-FP-A4BE-01 5 129241081 129241081 C T CHSY3 Missense_Mutation p.R187C 0.26 deleterious(0) probably_damaging(0.973) TCGA-FP-A4BE-01 5 132232692 132232692 G A AFF4 Missense_Mutation p.R544C 0.24 tolerated(0.05) probably_damaging(0.999) TCGA-FP-A4BE-01 5 135651372 135651372 G A TRPC7 Silent p.N292N 0.27 TCGA-FP-A4BE-01 5 137295364 137295364 G A FAM13B Missense_Mutation p.A461V 0.25 tolerated(0.4) benign(0.001) TCGA-FP-A4BE-01 5 137346815 137346815 A G FAM13B Missense_Mutation p.M191T 0.35 deleterious(0) benign(0.063) TCGA-FP-A4BE-01 5 13919383 13919383 T - DNAH5 Frame_Shift_Del p.R293Dfs*12 0.26 TCGA-FP-A4BE-01 5 140166568 140166568 C T PCDHA1 Silent p.T231T 0.35 TCGA-FP-A4BE-01 5 140167730 140167730 C T PCDHA1 Missense_Mutation p.R619C 0.31 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-FP-A4BE-01 5 140186810 140186810 G A PCDHA4 Missense_Mutation p.R13H 0.28 tolerated_low_confidence(0.27) benign(0.003) TCGA-FP-A4BE-01 5 140263148 140263148 C T PCDHA13 Missense_Mutation p.S432L 0.27 tolerated_low_confidence(0.06) benign(0.411) TCGA-FP-A4BE-01 5 140482390 140482390 G A PCDHB3 Silent p.A719A 0.31 TCGA-FP-A4BE-01 5 140531513 140531513 G A PCDHB6 Missense_Mutation p.V559M 0.31 deleterious(0) probably_damaging(0.969) TCGA-FP-A4BE-01 5 140580945 140580945 C T PCDHB11 Missense_Mutation p.A533V 0.24 deleterious_low_confidence(0) possibly_damaging(0.764) TCGA-FP-A4BE-01 5 140581300 140581300 G A PCDHB11 Silent p.P651P 0.32 TCGA-FP-A4BE-01 5 140581426 140581426 G A PCDHB11 Silent p.A693A 0.35 TCGA-FP-A4BE-01 5 140615495 140615495 A G PCDHB18 RNA 0.26 TCGA-FP-A4BE-01 5 140744367 140744367 C T PCDHGA5 Missense_Mutation p.A157V 0.26 tolerated_low_confidence(0.09) probably_damaging(0.969) TCGA-FP-A4BE-01 5 140856562 140856562 A G PCDHGC3 Silent p.Q293Q 0.32 TCGA-FP-A4BE-01 5 141305060 141305061 - C KIAA0141 Frame_Shift_Ins p.N80Efs*110 0.23 TCGA-FP-A4BE-01 5 141305077 141305077 G A KIAA0141 Nonsense_Mutation p.W83* 0.08 TCGA-FP-A4BE-01 5 141318346 141318346 T C KIAA0141 3'UTR 0.32 TCGA-FP-A4BE-01 5 142264882 142264882 A G ARHGAP26 Missense_Mutation p.D135G 0.32 deleterious(0) possibly_damaging(0.822) TCGA-FP-A4BE-01 5 14387858 14387858 A T TRIO Silent p.L1261L 0.35 TCGA-FP-A4BE-01 5 14485245 14485245 C T TRIO Missense_Mutation p.T2242M 0.25 benign(0.019) TCGA-FP-A4BE-01 5 1467000 1467000 G A LPCAT1 Silent p.Y428Y 0.27 TCGA-FP-A4BE-01 5 156890283 156890283 C T NIPAL4 Silent p.S135S 0.25 TCGA-FP-A4BE-01 5 157158484 157158484 C A THG1L Silent p.S12S 0.29 TCGA-FP-A4BE-01 5 159545831 159545831 G T PWWP2A Missense_Mutation p.L189I 0.21 deleterious(0.01) possibly_damaging(0.808) TCGA-FP-A4BE-01 5 160076224 160076224 C T ATP10B Missense_Mutation p.V239M 0.15 tolerated(0.07) probably_damaging(0.983) TCGA-FP-A4BE-01 5 161576318 161576318 C A GABRG2 Missense_Mutation p.P416H 0.25 deleterious(0.02) probably_damaging(1) TCGA-FP-A4BE-01 5 162887137 162887137 C T NUDCD2 5'UTR 0.24 TCGA-FP-A4BE-01 5 167589703 167589703 G T TENM2 Missense_Mutation p.G837V 0.26 deleterious(0) probably_damaging(0.988) TCGA-FP-A4BE-01 5 176311091 176311091 G A HK3 Silent p.C634C 0.29 TCGA-FP-A4BE-01 5 176520545 176520545 C T FGFR4 Missense_Mutation p.R464W 0.26 deleterious(0) probably_damaging(0.991) TCGA-FP-A4BE-01 5 176942772 176942772 C T DDX41 Missense_Mutation p.R162H 0.23 tolerated(0.06) probably_damaging(0.996) TCGA-FP-A4BE-01 5 177658438 177658438 T G PHYKPL Missense_Mutation p.E49A 0.34 tolerated(0.54) benign(0.014) TCGA-FP-A4BE-01 5 177658483 177658483 A C PHYKPL Missense_Mutation p.I34S 0.06 deleterious(0) probably_damaging(0.948) TCGA-FP-A4BE-01 5 178359347 178359347 C T ZFP2 Missense_Mutation p.R345W 0.38 deleterious(0.02) probably_damaging(0.996) TCGA-FP-A4BE-01 5 178392167 178392167 A G ZNF454 Silent p.S254S 0.30 TCGA-FP-A4BE-01 5 178503473 178503473 G A ZNF354C Missense_Mutation p.V19M 0.29 deleterious(0) probably_damaging(0.999) TCGA-FP-A4BE-01 5 179007984 179007984 T A RUFY1 Missense_Mutation p.N309K 0.33 deleterious(0) benign(0.37) TCGA-FP-A4BE-01 5 180374631 180374632 - GA BTNL8 Intron 0.24 TCGA-FP-A4BE-01 5 21752216 21752216 G A CDH12 Missense_Mutation p.A672V 0.30 deleterious(0) probably_damaging(1) TCGA-FP-A4BE-01 5 24505263 24505263 G A CDH10 Silent p.L451L 0.23 TCGA-FP-A4BE-01 5 35910535 35910535 A C CAPSL Missense_Mutation p.L83R 0.33 deleterious(0) probably_damaging(0.93) TCGA-FP-A4BE-01 5 35954404 35954404 A G UGT3A1 Missense_Mutation p.F491S 0.29 deleterious(0) probably_damaging(1) TCGA-FP-A4BE-01 5 37020714 37020714 A G NIPBL Missense_Mutation p.N1722D 0.36 tolerated(0.5) benign(0.005) TCGA-FP-A4BE-01 5 37183479 37183479 G A C5orf42 Nonsense_Mutation p.R1602* 0.32 TCGA-FP-A4BE-01 5 37196015 37196015 A - C5orf42 Frame_Shift_Del p.F1252Lfs*19 0.23 TCGA-FP-A4BE-01 5 40681634 40681634 C T PTGER4 Missense_Mutation p.A180V 0.29 tolerated(0.77) benign(0.046) TCGA-FP-A4BE-01 5 41004528 41004528 T - MROH2B Frame_Shift_Del p.I1372Sfs*5 0.23 TCGA-FP-A4BE-01 5 453621 453621 G A EXOC3 Silent p.T167T 0.27 TCGA-FP-A4BE-01 5 5186298 5186298 C T ADAMTS16 Silent p.D299D 0.23 TCGA-FP-A4BE-01 5 52096478 52096478 A G PELO Missense_Mutation p.K84E 0.35 deleterious(0.01) possibly_damaging(0.752) TCGA-FP-A4BE-01 5 53814488 53814488 G A SNX18 Missense_Mutation p.V236I 0.33 deleterious(0) benign(0.19) TCGA-FP-A4BE-01 5 54281199 54281199 G A ESM1 Silent p.D49D 0.27 TCGA-FP-A4BE-01 5 54945092 54945092 G A SLC38A9 Missense_Mutation p.R335C 0.35 deleterious(0.05) possibly_damaging(0.646) TCGA-FP-A4BE-01 5 58120944 58120944 C T RAB3C Missense_Mutation p.R151W 0.32 deleterious(0) probably_damaging(0.998) TCGA-FP-A4BE-01 5 59983002 59983002 C T DEPDC1B Missense_Mutation p.R34H 0.30 deleterious(0) probably_damaging(0.987) TCGA-FP-A4BE-01 5 60063707 60063707 T C ELOVL7 Missense_Mutation p.I93M 0.27 tolerated(0.12) benign(0.021) TCGA-FP-A4BE-01 5 64036933 64036933 G A SREK1IP1 Silent p.S52S 0.43 TCGA-FP-A4BE-01 5 68689214 68689218 TTATT - RAD17 Frame_Shift_Del p.L448* 0.38 TCGA-FP-A4BE-01 5 71499573 71499573 G A MAP1B Missense_Mutation p.R2399Q 0.30 probably_damaging(0.99) TCGA-FP-A4BE-01 5 73932117 73932117 G A ENC1 Missense_Mutation p.A65V 0.26 tolerated(0.08) probably_damaging(0.998) TCGA-FP-A4BE-01 5 79029657 79029657 C T CMYA5 Missense_Mutation p.A1690V 0.17 benign(0.001) TCGA-FP-A4BE-01 5 79809532 79809532 G T FAM151B Missense_Mutation p.Q87H 0.15 deleterious(0.04) benign(0.049) TCGA-FP-A4BE-01 5 79966025 79966025 C T MSH3 Missense_Mutation p.T230M 0.33 deleterious(0) probably_damaging(0.996) TCGA-FP-A4BE-01 5 89689823 89689824 - A CETN3 3'UTR 0.16 TCGA-FP-A4BE-01 5 94878927 94878927 T - TTC37 Frame_Shift_Del p.A66Lfs*4 0.20 TCGA-FP-A4BE-01 5 96503200 96503200 C T RIOK2 Silent p.S456S 0.28 TCGA-FP-A4BE-01 6 100838916 100838916 G A SIM1 Missense_Mutation p.S541L 0.09 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-FP-A4BE-01 6 101246645 101246645 C T ASCC3 Missense_Mutation p.E447K 0.20 tolerated(0.54) benign(0.007) TCGA-FP-A4BE-01 6 10881950 10881950 G A GCM2 Missense_Mutation p.P26L 0.40 deleterious(0.04) probably_damaging(0.923) TCGA-FP-A4BE-01 6 110301081 110301081 G A GPR6 Missense_Mutation p.A256T 0.27 deleterious(0.02) probably_damaging(0.995) TCGA-FP-A4BE-01 6 111804176 111804176 C T REV3L 5'UTR 0.33 TCGA-FP-A4BE-01 6 117890792 117890792 G A GOPC Silent p.N340N 0.28 TCGA-FP-A4BE-01 6 12121957 12121957 C T HIVEP1 Silent p.H643H 0.23 TCGA-FP-A4BE-01 6 121577347 121577347 C T TBC1D32 Silent p.L606L 0.24 TCGA-FP-A4BE-01 6 130761695 130761695 G A TMEM200A Missense_Mutation p.R43Q 0.34 deleterious(0.01) possibly_damaging(0.593) TCGA-FP-A4BE-01 6 135239565 135239565 G A ALDH8A1 Silent p.T484T 0.21 TCGA-FP-A4BE-01 6 138192545 138192545 C T TNFAIP3 Missense_Mutation p.R61W 0.35 deleterious(0) probably_damaging(0.962) TCGA-FP-A4BE-01 6 138531123 138531123 A G KIAA1244 Missense_Mutation p.N99S 0.29 tolerated(0.23) benign(0.055) TCGA-FP-A4BE-01 6 144783875 144783875 C A UTRN Missense_Mutation p.P980H 0.42 deleterious(0.05) benign(0.002) TCGA-FP-A4BE-01 6 145948786 145948786 C T EPM2A Silent p.A254A 0.22 TCGA-FP-A4BE-01 6 148840850 148840851 - G SASH1 Frame_Shift_Ins p.A346Gfs*19 0.22 TCGA-FP-A4BE-01 6 149795589 149795589 C T ZC3H12D Missense_Mutation p.A31T 0.34 deleterious(0) probably_damaging(0.969) TCGA-FP-A4BE-01 6 150005721 150005721 C T LATS1 Silent p.V168V 0.29 TCGA-FP-A4BE-01 6 152419910 152419910 G A ESR1 Missense_Mutation p.V533M 0.32 tolerated(0.16) benign(0.382) TCGA-FP-A4BE-01 6 153347643 153347643 G A RGS17 Missense_Mutation p.A52V 0.27 tolerated(0.18) benign(0.011) TCGA-FP-A4BE-01 6 154411221 154411221 G A OPRM1 Missense_Mutation p.R277Q 0.33 tolerated(0.09) benign(0.269) TCGA-FP-A4BE-01 6 157528937 157528937 G A ARID1B Missense_Mutation p.R2221Q 0.33 probably_damaging(0.988) TCGA-FP-A4BE-01 6 160490923 160490923 G A IGF2R Missense_Mutation p.A1426T 0.24 deleterious(0.01) possibly_damaging(0.871) TCGA-FP-A4BE-01 6 161771035 161771035 C T PARK2 3'UTR 0.33 TCGA-FP-A4BE-01 6 163735880 163735880 A T PACRG Missense_Mutation p.D251V 0.29 deleterious(0.01) benign(0.363) TCGA-FP-A4BE-01 6 166580169 166580169 C T T Missense_Mutation p.D128N 0.35 deleterious(0) probably_damaging(0.915) TCGA-FP-A4BE-01 6 168462556 168462556 C T FRMD1 Missense_Mutation p.A326T 0.44 tolerated(0.9) benign(0.004) TCGA-FP-A4BE-01 6 170627989 170627989 C A FAM120B Missense_Mutation p.S504Y 0.31 tolerated_low_confidence(1) benign(0.003) TCGA-FP-A4BE-01 6 170870994 170870995 - GCA TBP In_Frame_Ins p.Q95dup 0.11 TCGA-FP-A4BE-01 6 170871007 170871007 A G TBP Silent p.Q61Q 0.18 TCGA-FP-A4BE-01 6 17788023 17788023 T - KIF13A Frame_Shift_Del p.V1116Sfs*23 0.26 TCGA-FP-A4BE-01 6 22287585 22287585 C T PRL 3'UTR 0.23 TCGA-FP-A4BE-01 6 26235192 26235192 A G HIST1H1D 5'UTR 0.33 TCGA-FP-A4BE-01 6 27925401 27925401 G A OR2B6 Missense_Mutation p.R128Q 0.29 tolerated(0.19) benign(0.016) TCGA-FP-A4BE-01 6 28964127 28964128 - T ZNF311 Frame_Shift_Ins p.G218Rfs*8 0.17 TCGA-FP-A4BE-01 6 30670572 30670572 A G MDC1 Missense_Mutation p.L1983P 0.08 deleterious(0) probably_damaging(1) TCGA-FP-A4BE-01 6 30859887 30859887 G T DDR1 Missense_Mutation p.W258C 0.29 deleterious(0) probably_damaging(0.998) TCGA-FP-A4BE-01 6 30876949 30876949 A G GTF2H4 Missense_Mutation p.R46G 0.29 deleterious(0.02) benign(0.199) TCGA-FP-A4BE-01 6 30879212 30879212 G A GTF2H4 Missense_Mutation p.R226Q 0.34 tolerated(0.06) probably_damaging(0.96) TCGA-FP-A4BE-01 6 30955877 30955877 C - MUC21 Frame_Shift_Del p.H538Tfs*18 0.30 TCGA-FP-A4BE-01 6 31560611 31560611 T C NCR3 5'UTR 0.35 TCGA-FP-A4BE-01 6 31612889 31612889 A T BAG6 Silent p.P407P 0.35 TCGA-FP-A4BE-01 6 31638784 31638784 G T LY6G5B Missense_Mutation p.K19N 0.32 deleterious(0) probably_damaging(0.991) TCGA-FP-A4BE-01 6 31740831 31740833 CTC - VWA7 In_Frame_Del p.E329del 0.35 TCGA-FP-A4BE-01 6 31747487 31747487 G T VARS Silent p.P1062P 0.32 TCGA-FP-A4BE-01 6 31750092 31750092 C T VARS Missense_Mutation p.R707H 0.31 deleterious(0.01) possibly_damaging(0.631) TCGA-FP-A4BE-01 6 31795922 31795922 C T HSPA1B Silent p.N65N 0.21 TCGA-FP-A4BE-01 6 32087711 32087711 C A ATF6B Missense_Mutation p.G286C 0.48 tolerated(0.05) probably_damaging(0.999) TCGA-FP-A4BE-01 6 32411068 32411068 G A HLA-DRA Silent p.T145T 0.32 TCGA-FP-A4BE-01 6 32946024 32946024 C T BRD2 Missense_Mutation p.A567V 0.29 tolerated(0.32) benign(0.094) TCGA-FP-A4BE-01 6 33037042 33037042 C - HLA-DPA1 Frame_Shift_Del p.V128Wfs*55 0.22 TCGA-FP-A4BE-01 6 33162723 33162723 G A RXRB Missense_Mutation p.R489W 0.26 deleterious(0) probably_damaging(1) TCGA-FP-A4BE-01 6 33240412 33240412 T C RPS18 Missense_Mutation p.V4A 0.34 tolerated(0.06) benign(0.034) TCGA-FP-A4BE-01 6 35200696 35200696 T C SCUBE3 Missense_Mutation p.I180T 0.24 tolerated(0.07) benign(0.005) TCGA-FP-A4BE-01 6 35427229 35427229 C - FANCE Frame_Shift_Del p.T412Kfs*13 0.21 TCGA-FP-A4BE-01 6 35773660 35773660 C T LHFPL5 Silent p.N71N 0.26 TCGA-FP-A4BE-01 6 35803222 35803222 A - SRPK1 Frame_Shift_Del p.F609Lfs*4 0.19 TCGA-FP-A4BE-01 6 36454973 36454973 C T KCTD20 3'UTR 0.40 TCGA-FP-A4BE-01 6 37617966 37617966 C T MDGA1 Missense_Mutation p.G510R 0.36 deleterious(0) probably_damaging(1) TCGA-FP-A4BE-01 6 38160312 38160312 G A BTBD9 Missense_Mutation p.H542Y 0.30 tolerated(0.14) possibly_damaging(0.873) TCGA-FP-A4BE-01 6 38771012 38771012 G A DNAH8 Missense_Mutation p.A770T 0.10 possibly_damaging(0.489) TCGA-FP-A4BE-01 6 38790795 38790795 C T DNAH8 Silent p.R1018R 0.31 TCGA-FP-A4BE-01 6 38885823 38885824 - A DNAH8 Frame_Shift_Ins p.V3263Sfs*23 0.21 TCGA-FP-A4BE-01 6 39580993 39580993 A - KIF6 Frame_Shift_Del p.L204* 0.25 TCGA-FP-A4BE-01 6 39828810 39828810 C A DAAM2 Intron 0.38 TCGA-FP-A4BE-01 6 4031881 4031881 A - PRPF4B Frame_Shift_Del p.K46Rfs*58 0.29 TCGA-FP-A4BE-01 6 41738509 41738516 TGGGGGCT - FRS3 Frame_Shift_Del p.Q440Hfs*17 0.27 TCGA-FP-A4BE-01 6 41739036 41739036 G - FRS3 Frame_Shift_Del p.P267Hfs*36 0.30 TCGA-FP-A4BE-01 6 42236161 42236161 G - TRERF1 Frame_Shift_Del p.L390Sfs*18 0.26 TCGA-FP-A4BE-01 6 42937691 42937691 C T PEX6 Missense_Mutation p.V389I 0.32 tolerated(0.27) benign(0.003) TCGA-FP-A4BE-01 6 42978440 42978440 A - PPP2R5D Frame_Shift_Del p.I509Sfs*39 0.22 TCGA-FP-A4BE-01 6 43022057 43022057 G - MRPL2 Frame_Shift_Del p.M292* 0.20 TCGA-FP-A4BE-01 6 43038170 43038170 C T KLC4 Missense_Mutation p.R338W 0.31 deleterious(0.01) probably_damaging(0.995) TCGA-FP-A4BE-01 6 43191082 43191082 C T CUL9 Silent p.L2411L 0.21 TCGA-FP-A4BE-01 6 43227330 43227330 C - TTBK1 Frame_Shift_Del p.P439Qfs*16 0.29 TCGA-FP-A4BE-01 6 43589374 43589376 CTT - GTPBP2 In_Frame_Del p.E595del 0.44 TCGA-FP-A4BE-01 6 44376337 44376337 C T CDC5L Nonsense_Mutation p.R354* 0.19 TCGA-FP-A4BE-01 6 46657015 46657015 G A TDRD6 Missense_Mutation p.G384S 0.35 tolerated(0.05) benign(0.087) TCGA-FP-A4BE-01 6 51524127 51524127 G A PKHD1 Silent p.H3599H 0.33 TCGA-FP-A4BE-01 6 53519759 53519759 T - KLHL31 Frame_Shift_Del p.D105Tfs*15 0.29 TCGA-FP-A4BE-01 6 55039410 55039411 - C HCRTR2 Frame_Shift_Ins p.C12Lfs*12 0.27 TCGA-FP-A4BE-01 6 6167823 6167823 G A F13A1 Silent p.A592A 0.47 TCGA-FP-A4BE-01 6 71186928 71186928 T C FAM135A Silent p.H145H 0.22 TCGA-FP-A4BE-01 6 73107977 73107977 A - RIMS1 Frame_Shift_Del p.K1550Rfs*4 0.37 TCGA-FP-A4BE-01 6 74104478 74104478 G A DDX43 5'UTR 0.31 TCGA-FP-A4BE-01 6 75798830 75798830 C T COL12A1 Missense_Mutation p.G3001D 0.17 probably_damaging(1) TCGA-FP-A4BE-01 6 82941506 82941506 C T IBTK Missense_Mutation p.G158R 0.16 deleterious(0) probably_damaging(0.99) TCGA-FP-A4BE-01 6 83868323 83868323 C T DOPEY1 Missense_Mutation p.A2260V 0.32 tolerated(0.13) benign(0.068) TCGA-FP-A4BE-01 6 83921764 83921764 G A ME1 Missense_Mutation p.P533L 0.16 deleterious(0) probably_damaging(1) TCGA-FP-A4BE-01 6 8428193 8428193 C T SLC35B3 Silent p.Q132Q 0.28 TCGA-FP-A4BE-01 6 87970973 87970974 - A ZNF292 Frame_Shift_Ins p.R2545Kfs*4 0.35 TCGA-FP-A4BE-01 6 89967490 89967490 G A GABRR2 Missense_Mutation p.R433C 0.20 tolerated(0.18) benign(0.004) TCGA-FP-A4BE-01 6 90415853 90415853 A - MDN1 Frame_Shift_Del p.F2691Lfs*7 0.25 TCGA-FP-A4BE-01 6 90428333 90428333 C T MDN1 Missense_Mutation p.R2112Q 0.23 probably_damaging(0.997) TCGA-FP-A4BE-01 6 90428941 90428941 T C MDN1 Missense_Mutation p.I1991V 0.29 benign(0.002) TCGA-FP-A4BE-01 7 100086272 100086272 C T NYAP1 Missense_Mutation p.R310W 0.30 deleterious(0.03) probably_damaging(0.984) TCGA-FP-A4BE-01 7 100187584 100187584 A G FBXO24 Intron 0.27 TCGA-FP-A4BE-01 7 100284638 100284638 G A GIGYF1 Missense_Mutation p.R172W 0.34 deleterious(0) unknown(0) TCGA-FP-A4BE-01 7 100486216 100486216 C A SRRT 3'UTR 0.28 TCGA-FP-A4BE-01 7 100732110 100732110 G A TRIM56 Missense_Mutation p.R506Q 0.25 tolerated(0.31) benign(0.24) TCGA-FP-A4BE-01 7 103230147 103230147 G A RELN Silent p.C1347C 0.37 TCGA-FP-A4BE-01 7 103969403 103969403 A G LHFPL3 Missense_Mutation p.Y59C 0.31 deleterious(0.02) probably_damaging(0.999) TCGA-FP-A4BE-01 7 107188756 107188756 G A COG5 Missense_Mutation p.T136M 0.30 deleterious(0.02) benign(0.092) TCGA-FP-A4BE-01 7 107240915 107240915 A G BCAP29 Missense_Mutation p.E185G 0.19 tolerated(0.06) benign(0.05) TCGA-FP-A4BE-01 7 113518179 113518179 C A PPP1R3A Nonsense_Mutation p.E990* 0.22 TCGA-FP-A4BE-01 7 113519890 113519890 C A PPP1R3A Missense_Mutation p.L419F 0.31 tolerated(0.1) benign(0.223) TCGA-FP-A4BE-01 7 120740092 120740093 - T CPED1 Frame_Shift_Ins p.H289Sfs*24 0.17 TCGA-FP-A4BE-01 7 122130140 122130140 T C CADPS2 Missense_Mutation p.Q616R 0.33 tolerated(0.39) benign(0.042) TCGA-FP-A4BE-01 7 122757648 122757648 A G SLC13A1 Silent p.H509H 0.25 TCGA-FP-A4BE-01 7 123104913 123104914 - A IQUB Frame_Shift_Ins p.N578* 0.15 TCGA-FP-A4BE-01 7 127978327 127978327 C T RBM28 Missense_Mutation p.G173D 0.33 deleterious(0.04) benign(0.105) TCGA-FP-A4BE-01 7 128320141 128320141 G A FAM71F2 Silent p.A224A 0.29 TCGA-FP-A4BE-01 7 130143793 130143794 - T MEST Frame_Shift_Ins p.L283Ffs*28 0.20 TCGA-FP-A4BE-01 7 131825418 131825418 G A PLXNA4 Missense_Mutation p.S1793L 0.27 deleterious(0) probably_damaging(0.999) TCGA-FP-A4BE-01 7 131865446 131865446 T C PLXNA4 Missense_Mutation p.N1180D 0.14 tolerated(0.13) possibly_damaging(0.747) TCGA-FP-A4BE-01 7 134878103 134878103 C T WDR91 Silent p.S513S 0.29 TCGA-FP-A4BE-01 7 135377007 135377007 T C SLC13A4 Intron 0.55 TCGA-FP-A4BE-01 7 139168256 139168256 C T KLRG2 Missense_Mutation p.E45K 0.36 tolerated_low_confidence(0.15) benign(0.122) TCGA-FP-A4BE-01 7 139416323 139416323 C T HIPK2 Missense_Mutation p.A171T 0.27 tolerated(0.53) benign(0.074) TCGA-FP-A4BE-01 7 139416429 139416429 G A HIPK2 Silent p.S135S 0.29 TCGA-FP-A4BE-01 7 141803097 141803097 A T MGAM Missense_Mutation p.N1785I 0.25 deleterious(0) benign(0.044) TCGA-FP-A4BE-01 7 142965961 142965961 A - GSTK1 3'UTR 0.27 TCGA-FP-A4BE-01 7 148506210 148506210 A - EZH2 Frame_Shift_Del p.F716Lfs*24 0.10 TCGA-FP-A4BE-01 7 148767317 148767317 A G ZNF786 3'UTR 0.47 TCGA-FP-A4BE-01 7 14880850 14880850 C T DGKB Silent p.S13S 0.13 TCGA-FP-A4BE-01 7 149489805 149489805 G A SSPO RNA 0.31 TCGA-FP-A4BE-01 7 149576655 149576655 G A ATP6V0E2 Silent p.P177P 0.32 TCGA-FP-A4BE-01 7 150174633 150174633 G A GIMAP8 Missense_Mutation p.R588Q 0.29 tolerated(0.19) benign(0.001) TCGA-FP-A4BE-01 7 150774416 150774417 CA - FASTK Frame_Shift_Del p.V424Afs*43 0.21 TCGA-FP-A4BE-01 7 150920903 150920903 G A ABCF2 Missense_Mutation p.R195C 0.37 deleterious(0.01) benign(0.262) TCGA-FP-A4BE-01 7 155556608 155556609 - G RBM33 Frame_Shift_Ins p.L1031Pfs*109 0.35 TCGA-FP-A4BE-01 7 1976414 1976414 G A MAD1L1 Silent p.R572R 0.50 TCGA-FP-A4BE-01 7 21631141 21631141 A - DNAH11 Frame_Shift_Del p.K873Nfs*4 0.21 TCGA-FP-A4BE-01 7 21805143 21805143 C T DNAH11 Missense_Mutation p.A3020V 0.33 benign(0.005) TCGA-FP-A4BE-01 7 21947920 21947920 G A CDCA7L Missense_Mutation p.A170V 0.18 tolerated(0.31) benign(0.004) TCGA-FP-A4BE-01 7 22197474 22197474 T - RAPGEF5 Frame_Shift_Del p.K366Rfs*22 0.16 TCGA-FP-A4BE-01 7 23385596 23385596 T - IGF2BP3 Frame_Shift_Del p.I302Lfs*17 0.25 TCGA-FP-A4BE-01 7 24705665 24705666 - A MPP6 Frame_Shift_Ins p.K307Efs*14 0.30 TCGA-FP-A4BE-01 7 24784283 24784283 A G DFNA5 Missense_Mutation p.L101P 0.25 deleterious(0) probably_damaging(0.999) TCGA-FP-A4BE-01 7 27142174 27142175 - G HOXA2 5'UTR 0.29 TCGA-FP-A4BE-01 7 27149901 27149901 G - HOXA3 Frame_Shift_Del p.P120Rfs*40 0.35 TCGA-FP-A4BE-01 7 27185490 27185490 C T HOXA6 Silent p.T163T 0.35 TCGA-FP-A4BE-01 7 27194523 27194523 G A HOXA7 3'UTR 0.35 TCGA-FP-A4BE-01 7 27196039 27196039 C T HOXA7 Silent p.A42A 0.32 TCGA-FP-A4BE-01 7 27805503 27805503 A G TAX1BP1 Missense_Mutation p.T106A 0.16 deleterious(0) probably_damaging(0.972) TCGA-FP-A4BE-01 7 2854512 2854512 C T GNA12 Intron 0.27 TCGA-FP-A4BE-01 7 29111459 29111459 T - CPVL Frame_Shift_Del p.K265Sfs*11 0.22 TCGA-FP-A4BE-01 7 29727117 29727117 T A DPY19L2P3 Intron 0.80 TCGA-FP-A4BE-01 7 30402004 30402004 A G ZNRF2 Missense_Mutation p.E228G 0.09 deleterious(0) benign(0.115) TCGA-FP-A4BE-01 7 37955852 37955852 C T SFRP4 Silent p.P96P 0.32 TCGA-FP-A4BE-01 7 4152942 4152942 C T SDK1 Silent p.N1152N 0.33 TCGA-FP-A4BE-01 7 42005573 42005573 G - GLI3 Frame_Shift_Del p.P1033Rfs*46 0.22 TCGA-FP-A4BE-01 7 42005961 42005961 G A GLI3 Missense_Mutation p.R904C 0.35 deleterious(0) probably_damaging(0.999) TCGA-FP-A4BE-01 7 43508671 43508671 G A HECW1 Silent p.R1022R 0.20 TCGA-FP-A4BE-01 7 43917152 43917152 G T URGCP Missense_Mutation p.P637Q 0.28 tolerated(0.32) possibly_damaging(0.779) TCGA-FP-A4BE-01 7 45650044 45650044 C - ADCY1 Frame_Shift_Del p.P287Lfs*16 0.26 TCGA-FP-A4BE-01 7 5103477 5103477 A G RBAK Silent p.S130S 0.25 TCGA-FP-A4BE-01 7 55221711 55221711 G A EGFR Missense_Mutation p.R252H 0.36 tolerated(0.12) benign(0.016) TCGA-FP-A4BE-01 7 56150999 56150999 G A PHKG1 Silent p.C205C 0.27 TCGA-FP-A4BE-01 7 63982037 63982037 A G ZNF680 Silent p.L365L 0.29 TCGA-FP-A4BE-01 7 64452669 64452669 G T ERV3-1 Missense_Mutation p.R246S 0.11 tolerated(0.5) benign(0.382) TCGA-FP-A4BE-01 7 65223306 65223306 T C SNORA22 3'Flank 0.33 TCGA-FP-A4BE-01 7 65557934 65557934 C T ASL 3'UTR 0.38 TCGA-FP-A4BE-01 7 6730955 6730955 G A ZNF12 Missense_Mutation p.R540W 0.29 deleterious(0.01) probably_damaging(0.971) TCGA-FP-A4BE-01 7 69599557 69599557 C T AUTS2 Silent p.F220F 0.32 TCGA-FP-A4BE-01 7 72470008 72470008 C A STAG3L3 RNA 0.12 TCGA-FP-A4BE-01 7 73790714 73790714 G A CLIP2 Silent p.Q661Q 0.28 TCGA-FP-A4BE-01 7 73973307 73973307 A G GTF2IRD1 Missense_Mutation p.T774A 0.33 deleterious(0.01) probably_damaging(0.982) TCGA-FP-A4BE-01 7 77408030 77408032 GAG - RSBN1L In_Frame_Del p.E697del 0.27 TCGA-FP-A4BE-01 7 77408156 77408157 - T RSBN1L Frame_Shift_Ins p.S740Ffs*3 0.19 TCGA-FP-A4BE-01 7 80374453 80374453 C T SEMA3C Silent p.T671T 0.25 TCGA-FP-A4BE-01 7 82582077 82582077 C T PCLO Missense_Mutation p.R2731H 0.35 unknown(0) TCGA-FP-A4BE-01 7 87069126 87069127 CT - ABCB4 Frame_Shift_Del p.A531Pfs*27 0.27 TCGA-FP-A4BE-01 7 92098823 92098823 T C ERVW-1 Silent p.S291S 0.18 TCGA-FP-A4BE-01 7 92926489 92926489 G A CCDC132 Missense_Mutation p.S432N 0.34 tolerated(0.13) possibly_damaging(0.625) TCGA-FP-A4BE-01 7 933385 933385 T C GET4 Missense_Mutation p.L252P 0.39 deleterious(0.04) probably_damaging(0.99) TCGA-FP-A4BE-01 7 98608720 98608720 C T TRRAP Missense_Mutation p.R3648C 0.31 probably_damaging(0.985) TCGA-FP-A4BE-01 7 98647228 98647228 C T SMURF1 Missense_Mutation p.R330Q 0.31 deleterious(0.01) probably_damaging(0.985) TCGA-FP-A4BE-01 7 99002491 99002493 CTT - PDAP1 In_Frame_Del p.K33del 0.33 TCGA-FP-A4BE-01 7 99030941 99030941 C T ATP5J2-PTCD1 Missense_Mutation p.R234Q 0.29 deleterious(0) probably_damaging(1) TCGA-FP-A4BE-01 7 99809071 99809071 G A STAG3 Missense_Mutation p.A1142T 0.25 tolerated_low_confidence(0.67) benign(0.014) TCGA-FP-A4BE-01 7 99965002 99965002 C T PILRB 3'UTR 0.23 TCGA-FP-A4BE-01 8 101232550 101232550 C T SPAG1 Missense_Mutation p.R527W 0.44 deleterious(0) probably_damaging(1) TCGA-FP-A4BE-01 8 104948865 104948865 G A RIMS2 Missense_Mutation p.R821Q 0.21 tolerated_low_confidence(0.07) benign(0.396) TCGA-FP-A4BE-01 8 105261777 105261777 C T RIMS2 Missense_Mutation p.R1218C 0.22 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-FP-A4BE-01 8 105509429 105509429 A - LRP12 Frame_Shift_Del p.C451Afs*37 0.20 TCGA-FP-A4BE-01 8 110655088 110655088 T C SYBU Missense_Mutation p.H33R 0.23 tolerated(0.07) probably_damaging(0.998) TCGA-FP-A4BE-01 8 116631681 116631682 - T TRPS1 Frame_Shift_Ins p.T215Nfs*2 0.29 TCGA-FP-A4BE-01 8 11710861 11710861 T C CTSB Missense_Mutation p.N35D 0.23 deleterious(0) probably_damaging(0.975) TCGA-FP-A4BE-01 8 119938902 119938902 C T TNFRSF11B Silent p.T216T 0.42 TCGA-FP-A4BE-01 8 124810453 124810453 G A FAM91A1 Missense_Mutation p.R512Q 0.28 tolerated(0.08) benign(0.294) TCGA-FP-A4BE-01 8 12589277 12589277 T A LONRF1 Missense_Mutation p.K552N 0.21 deleterious(0) possibly_damaging(0.811) TCGA-FP-A4BE-01 8 133150233 133150233 T - KCNQ3 Frame_Shift_Del p.K533Nfs*6 0.26 TCGA-FP-A4BE-01 8 13357501 13357501 C T DLC1 Missense_Mutation p.R27H 0.45 tolerated_low_confidence(0.5) benign(0) TCGA-FP-A4BE-01 8 133900416 133900416 G T TG Missense_Mutation p.W788C 0.39 deleterious(0) probably_damaging(0.956) TCGA-FP-A4BE-01 8 139626111 139626111 G A COL22A1 Missense_Mutation p.P1326L 0.22 unknown(0) TCGA-FP-A4BE-01 8 142228274 142228274 C - SLC45A4 Frame_Shift_Del p.E438Rfs*14 0.36 TCGA-FP-A4BE-01 8 143694777 143694777 G A ARC Missense_Mutation p.R286C 0.45 deleterious(0) probably_damaging(0.997) TCGA-FP-A4BE-01 8 144378685 144378685 C T ZNF696 Silent p.L280L 0.27 TCGA-FP-A4BE-01 8 144392346 144392346 T G TOP1MT Missense_Mutation p.E532A 0.24 tolerated(0.11) possibly_damaging(0.854) TCGA-FP-A4BE-01 8 144732637 144732637 C T ZNF623 Missense_Mutation p.R199C 0.17 deleterious(0) benign(0.319) TCGA-FP-A4BE-01 8 144919335 144919335 T C NRBP2 Missense_Mutation p.Y380C 0.19 deleterious(0) probably_damaging(0.91) TCGA-FP-A4BE-01 8 144996253 144996253 T C PLEC Missense_Mutation p.Q2716R 0.21 benign(0.074) TCGA-FP-A4BE-01 8 144998339 144998339 G A PLEC Missense_Mutation p.R2057W 0.21 unknown(0) TCGA-FP-A4BE-01 8 145101632 145101632 C T SPATC1 Silent p.N517N 0.21 TCGA-FP-A4BE-01 8 145700011 145700012 - C FOXH1 Frame_Shift_Ins p.A237Sfs*12 0.50 TCGA-FP-A4BE-01 8 145746112 145746112 C T LRRC14 Missense_Mutation p.R274C 0.40 deleterious(0) probably_damaging(0.95) TCGA-FP-A4BE-01 8 146067177 146067178 - A ZNF7 Frame_Shift_Ins p.L232Vfs*3 0.24 TCGA-FP-A4BE-01 8 17396407 17396407 C T SLC7A2 Missense_Mutation p.P25L 0.44 deleterious_low_confidence(0.01) benign(0) TCGA-FP-A4BE-01 8 17510955 17510955 A G MTUS1 Silent p.S1089S 0.19 TCGA-FP-A4BE-01 8 195439 195440 - GT ZNF596 Frame_Shift_Ins p.G201Vfs*16 0.20 TCGA-FP-A4BE-01 8 20077858 20077858 G A ATP6V1B2 Missense_Mutation p.R494K 0.46 tolerated(0.1) benign(0.075) TCGA-FP-A4BE-01 8 20107358 20107358 G A LZTS1 Missense_Mutation p.R556W 0.26 deleterious(0) probably_damaging(0.999) TCGA-FP-A4BE-01 8 21938991 21938991 C T DMTN 3'UTR 0.30 TCGA-FP-A4BE-01 8 21959281 21959281 C - FAM160B2 Frame_Shift_Del p.H592Mfs*30 0.18 TCGA-FP-A4BE-01 8 22056670 22056670 A G BMP1 Intron 0.25 TCGA-FP-A4BE-01 8 22547920 22547920 C T EGR3 3'UTR 0.52 TCGA-FP-A4BE-01 8 22969281 22969281 C T TNFRSF10C Nonsense_Mutation p.Q37* 0.55 TCGA-FP-A4BE-01 8 23198563 23198563 C T LOXL2 Missense_Mutation p.V229M 0.40 deleterious(0) probably_damaging(0.993) TCGA-FP-A4BE-01 8 24358377 24358377 C T ADAM7 Nonsense_Mutation p.R693* 0.37 TCGA-FP-A4BE-01 8 24813797 24813797 G T CTD-2168K21.2 5'Flank 0.36 TCGA-FP-A4BE-01 8 25365147 25365147 A G CDCA2 Missense_Mutation p.T989A 0.51 tolerated(0.23) benign(0.011) TCGA-FP-A4BE-01 8 26441410 26441410 G A DPYSL2 Missense_Mutation p.R75H 0.45 tolerated(1) benign(0.013) TCGA-FP-A4BE-01 8 27779142 27779142 G A SCARA5 Missense_Mutation p.R288C 0.28 deleterious(0.01) probably_damaging(0.964) TCGA-FP-A4BE-01 8 28827640 28827640 G A HMBOX1 Missense_Mutation p.R35H 0.44 deleterious(0.02) probably_damaging(0.999) TCGA-FP-A4BE-01 8 2949052 2949052 T G CSMD1 Missense_Mutation p.K2424T 0.11 possibly_damaging(0.583) TCGA-FP-A4BE-01 8 3265576 3265576 G A CSMD1 Missense_Mutation p.A639V 0.29 benign(0.013) TCGA-FP-A4BE-01 8 35401932 35401932 A T UNC5D Intron 0.22 TCGA-FP-A4BE-01 8 36766906 36766906 G A KCNU1 Silent p.P728P 0.21 TCGA-FP-A4BE-01 8 37623853 37623853 A - PROSC Frame_Shift_Del p.N101Mfs*5 0.22 TCGA-FP-A4BE-01 8 37823528 37823528 C T ADRB3 Missense_Mutation p.A154T 0.25 deleterious(0.02) benign(0.376) TCGA-FP-A4BE-01 8 38834063 38834063 C T HTRA4 Silent p.H192H 0.37 TCGA-FP-A4BE-01 8 41581120 41581120 C T ANK1 Missense_Mutation p.R281H 0.43 tolerated(0.07) probably_damaging(0.998) TCGA-FP-A4BE-01 8 42038027 42038027 C T PLAT Missense_Mutation p.A356T 0.26 deleterious(0.05) probably_damaging(1) TCGA-FP-A4BE-01 8 42294680 42294680 G A SLC20A2 Silent p.G450G 0.52 TCGA-FP-A4BE-01 8 42295010 42295010 G A SLC20A2 Silent p.D340D 0.22 TCGA-FP-A4BE-01 8 43054586 43054587 - A HGSNAT Frame_Shift_Ins p.F595Ifs*34 0.36 TCGA-FP-A4BE-01 8 48309123 48309123 C A SPIDR Missense_Mutation p.P238H 0.18 deleterious(0) probably_damaging(0.976) TCGA-FP-A4BE-01 8 48772185 48772185 C T PRKDC Missense_Mutation p.R2064H 0.19 benign(0.002) TCGA-FP-A4BE-01 8 51449331 51449331 C T SNTG1 Missense_Mutation p.R215C 0.42 deleterious(0.01) probably_damaging(0.932) TCGA-FP-A4BE-01 8 52320920 52320920 C T PXDNL Silent p.P1088P 0.24 TCGA-FP-A4BE-01 8 52321557 52321557 G A PXDNL Missense_Mutation p.A876V 0.43 tolerated(0.32) benign(0.013) TCGA-FP-A4BE-01 8 53569498 53569498 T - RB1CC1 Frame_Shift_Del p.K964Sfs*13 0.08 TCGA-FP-A4BE-01 8 56436826 56436826 G T XKR4 3'UTR 0.18 TCGA-FP-A4BE-01 8 57224836 57224836 T C SDR16C5 Silent p.E115E 0.11 TCGA-FP-A4BE-01 8 61654248 61654248 C T CHD7 Missense_Mutation p.P86L 0.39 possibly_damaging(0.726) TCGA-FP-A4BE-01 8 61777711 61777711 C T CHD7 Missense_Mutation p.T2738M 0.36 probably_damaging(0.965) TCGA-FP-A4BE-01 8 623997 623997 A G ERICH1 Missense_Mutation p.S119P 0.19 tolerated(0.07) benign(0.086) TCGA-FP-A4BE-01 8 6681079 6681079 A G XKR5 RNA 0.27 TCGA-FP-A4BE-01 8 68076631 68076631 A - CSPP1 Frame_Shift_Del p.N903Mfs*2 0.25 TCGA-FP-A4BE-01 8 69009291 69009291 G A PREX2 Missense_Mutation p.G803E 0.15 tolerated_low_confidence(0.51) possibly_damaging(0.719) TCGA-FP-A4BE-01 8 69445431 69445431 A - C8orf34 Intron 0.47 TCGA-FP-A4BE-01 8 71512313 71512313 G A TRAM1 Missense_Mutation p.T43M 0.21 deleterious(0) possibly_damaging(0.889) TCGA-FP-A4BE-01 8 72127733 72127733 C T EYA1 Missense_Mutation p.V496M 0.25 tolerated(0.08) benign(0.44) TCGA-FP-A4BE-01 8 77617547 77617547 G - ZFHX4 Frame_Shift_Del p.L411Cfs*4 0.28 TCGA-FP-A4BE-01 8 79601500 79601500 T C ZC2HC1A Silent p.N132N 0.26 TCGA-FP-A4BE-01 8 8234140 8234140 G A SGK223 Silent p.P593P 0.26 TCGA-FP-A4BE-01 8 82751883 82751883 C A SNX16 Silent p.L113L 0.46 TCGA-FP-A4BE-01 8 85441713 85441713 G A RALYL Missense_Mutation p.V66I 0.38 deleterious(0.03) possibly_damaging(0.795) TCGA-FP-A4BE-01 8 92378866 92378867 - A SLC26A7 Frame_Shift_Ins p.F519Ifs*4 0.19 TCGA-FP-A4BE-01 8 95182766 95182766 A - CDH17 Frame_Shift_Del p.Y309Mfs*20 0.30 TCGA-FP-A4BE-01 8 97156741 97156741 C T GDF6 3'UTR 0.36 TCGA-FP-A4BE-01 8 99142350 99142350 C T POP1 Missense_Mutation p.R211W 0.40 deleterious(0) probably_damaging(1) TCGA-FP-A4BE-01 9 101585627 101585627 G A GALNT12 Missense_Mutation p.R154Q 0.32 deleterious(0.01) probably_damaging(0.963) TCGA-FP-A4BE-01 9 101706331 101706331 G A COL15A1 5'UTR 0.26 TCGA-FP-A4BE-01 9 104302547 104302547 G A RNF20 Silent p.Q64Q 0.26 TCGA-FP-A4BE-01 9 104433084 104433084 C A GRIN3A Missense_Mutation p.C537F 0.21 deleterious(0) probably_damaging(0.998) TCGA-FP-A4BE-01 9 111826802 111826802 C T TMEM245 Silent p.A526A 0.29 TCGA-FP-A4BE-01 9 112207523 112207523 G A PTPN3 Nonsense_Mutation p.Q155* 0.30 TCGA-FP-A4BE-01 9 113208197 113208197 G A SVEP1 Silent p.D1461D 0.22 TCGA-FP-A4BE-01 9 113562661 113562661 G A MUSK Missense_Mutation p.R668H 0.29 deleterious(0) probably_damaging(0.999) TCGA-FP-A4BE-01 9 114803670 114803670 C T SUSD1 3'UTR 0.24 TCGA-FP-A4BE-01 9 115932872 115932872 C T FKBP15 Missense_Mutation p.R899Q 0.18 tolerated(0.12) probably_damaging(0.997) TCGA-FP-A4BE-01 9 116810996 116810996 C T ZNF618 Missense_Mutation p.R379W 0.25 deleterious(0) probably_damaging(1) TCGA-FP-A4BE-01 9 116849 116849 A - FOXD4 Frame_Shift_Del p.L424* 0.12 TCGA-FP-A4BE-01 9 116930723 116930723 G A COL27A1 Silent p.T296T 0.29 TCGA-FP-A4BE-01 9 117031572 117031572 C T COL27A1 Missense_Mutation p.R1185W 0.25 probably_damaging(1) TCGA-FP-A4BE-01 9 117266581 117266581 G A DFNB31 Silent p.Y167Y 0.32 TCGA-FP-A4BE-01 9 124441045 124441045 G A DAB2IP Silent p.T43T 0.18 TCGA-FP-A4BE-01 9 125827654 125827654 C T RABGAP1 Missense_Mutation p.R608W 0.27 deleterious(0.03) probably_damaging(0.996) TCGA-FP-A4BE-01 9 126164031 126164031 T G DENND1A Intron 0.40 TCGA-FP-A4BE-01 9 129458768 129458768 G - LMX1B 3'UTR 0.39 TCGA-FP-A4BE-01 9 130027239 130027239 C T GARNL3 Missense_Mutation p.S28L 0.27 deleterious(0) possibly_damaging(0.714) TCGA-FP-A4BE-01 9 130207216 130207216 G A ZNF79 Missense_Mutation p.G413R 0.41 deleterious(0) probably_damaging(1) TCGA-FP-A4BE-01 9 131484054 131484054 C T ZDHHC12 Missense_Mutation p.V120I 0.28 deleterious(0.04) probably_damaging(0.993) TCGA-FP-A4BE-01 9 131670817 131670817 C T LRRC8A Silent p.D458D 0.27 TCGA-FP-A4BE-01 9 131749907 131749907 G T NUP188 Silent p.L768L 0.17 TCGA-FP-A4BE-01 9 131771452 131771452 C T SH3GLB2 Missense_Mutation p.R338H 0.19 deleterious(0.03) probably_damaging(0.97) TCGA-FP-A4BE-01 9 133759855 133759855 C T ABL1 Silent p.A745A 0.24 TCGA-FP-A4BE-01 9 133805164 133805164 C T FIBCD1 Silent p.S114S 0.40 TCGA-FP-A4BE-01 9 133805407 133805407 G A FIBCD1 Silent p.C33C 0.25 TCGA-FP-A4BE-01 9 134350787 134350787 G - PRRC2B Frame_Shift_Del p.V1093Sfs*77 0.15 TCGA-FP-A4BE-01 9 135374827 135374827 G A C9orf171 Missense_Mutation p.A158T 0.35 tolerated(0.36) benign(0.093) TCGA-FP-A4BE-01 9 135505770 135505770 A G DDX31 Silent p.P609P 0.15 TCGA-FP-A4BE-01 9 135862799 135862799 G A GFI1B Silent p.P77P 0.32 TCGA-FP-A4BE-01 9 135974124 135974124 G A RALGDS Silent p.N865N 0.19 TCGA-FP-A4BE-01 9 136323181 136323181 G A ADAMTS13 Missense_Mutation p.A1348T 0.10 tolerated(1) benign(0) TCGA-FP-A4BE-01 9 136913403 136913403 G A BRD3 Silent p.G296G 0.27 TCGA-FP-A4BE-01 9 138387269 138387269 C - C9orf116 3'UTR 0.24 TCGA-FP-A4BE-01 9 138642882 138642882 C T KCNT1 Silent p.I143I 0.30 TCGA-FP-A4BE-01 9 139273538 139273538 G A SNAPC4 Missense_Mutation p.P914L 0.36 tolerated(0.14) benign(0.031) TCGA-FP-A4BE-01 9 139276754 139276754 G A SNAPC4 Missense_Mutation p.T673I 0.28 deleterious(0.04) benign(0.269) TCGA-FP-A4BE-01 9 139310805 139310805 C T PMPCA Missense_Mutation p.P199S 0.30 deleterious(0) probably_damaging(0.997) TCGA-FP-A4BE-01 9 139345823 139345823 G - SEC16A Frame_Shift_Del p.P2066Qfs*76 0.30 TCGA-FP-A4BE-01 9 139739521 139739521 G A C9orf172 Missense_Mutation p.A219T 0.44 tolerated(0.23) benign(0.016) TCGA-FP-A4BE-01 9 139749937 139749937 C A MAMDC4 Missense_Mutation p.P446H 0.42 deleterious(0.01) possibly_damaging(0.849) TCGA-FP-A4BE-01 9 139959087 139959087 G - SAPCD2 3'UTR 0.47 TCGA-FP-A4BE-01 9 140115251 140115251 G A RNF208 Silent p.G138G 0.30 TCGA-FP-A4BE-01 9 140128330 140128330 A G SLC34A3 Missense_Mutation p.S288G 0.43 tolerated(0.11) benign(0) TCGA-FP-A4BE-01 9 140129157 140129157 G A SLC34A3 Missense_Mutation p.A437T 0.49 tolerated(0.08) possibly_damaging(0.884) TCGA-FP-A4BE-01 9 140173575 140173575 C T TOR4A Missense_Mutation p.A145V 0.45 tolerated(1) benign(0.102) TCGA-FP-A4BE-01 9 140243850 140243850 G A EXD3 Missense_Mutation p.P543L 0.46 deleterious(0) probably_damaging(0.997) TCGA-FP-A4BE-01 9 140358900 140358900 C T PNPLA7 Silent p.T1016T 0.25 TCGA-FP-A4BE-01 9 16437180 16437180 A C BNC2 Missense_Mutation p.L338V 0.42 tolerated(0.12) possibly_damaging(0.828) TCGA-FP-A4BE-01 9 18657700 18657700 C T ADAMTSL1 Nonsense_Mutation p.R300* 0.30 TCGA-FP-A4BE-01 9 21228193 21228193 T C IFNA17 5'UTR 0.49 TCGA-FP-A4BE-01 9 27197501 27197501 T A TEK Missense_Mutation p.L605I 0.12 deleterious(0) possibly_damaging(0.841) TCGA-FP-A4BE-01 9 27949356 27949356 C T LINGO2 Silent p.P438P 0.47 TCGA-FP-A4BE-01 9 33467203 33467203 C T NOL6 Missense_Mutation p.G595R 0.26 deleterious(0) probably_damaging(1) TCGA-FP-A4BE-01 9 33988989 33988989 C T UBAP2 Missense_Mutation p.G142S 0.27 tolerated(0.76) possibly_damaging(0.487) TCGA-FP-A4BE-01 9 34662077 34662077 C A CCL27 Splice_Site p.X68_splice 0.30 TCGA-FP-A4BE-01 9 35609004 35609004 A G TESK1 Silent p.S382S 0.25 TCGA-FP-A4BE-01 9 35714857 35714857 G A TLN1 Missense_Mutation p.A924V 0.30 tolerated(0.08) probably_damaging(0.97) TCGA-FP-A4BE-01 9 35720500 35720500 T - TLN1 Frame_Shift_Del p.S405Afs*84 0.22 TCGA-FP-A4BE-01 9 35736412 35736412 C A CREB3 Missense_Mutation p.L269I 0.32 tolerated(0.13) possibly_damaging(0.621) TCGA-FP-A4BE-01 9 35737837 35737837 G A GBA2 Nonsense_Mutation p.Q805* 0.32 TCGA-FP-A4BE-01 9 5054662 5054662 G A JAK2 Silent p.Q238Q 0.37 TCGA-FP-A4BE-01 9 72071229 72071229 C T APBA1 Silent p.A574A 0.32 TCGA-FP-A4BE-01 9 79324748 79324749 - T PRUNE2 Frame_Shift_Ins p.N814Kfs*16 0.16 TCGA-FP-A4BE-01 9 90321802 90321802 G - DAPK1 Frame_Shift_Del p.Y1275Tfs*31 0.27 TCGA-FP-A4BE-01 9 90501353 90501353 G A SPATA31E1 Missense_Mutation p.G651R 0.64 tolerated(0.51) benign(0.07) TCGA-FP-A4BE-01 9 91657077 91657077 C T SHC3 Silent p.T408T 0.25 TCGA-FP-A4BE-01 9 94809485 94809485 A G SPTLC1 Silent p.I350I 0.28 TCGA-FP-A4BE-01 9 94843197 94843197 G A SPTLC1 Silent p.F103F 0.36 TCGA-FP-A4BE-01 9 95076596 95076597 - T NOL8 Frame_Shift_Ins p.A771Sfs*11 0.20 TCGA-FP-A4BE-01 9 95263142 95263142 G A ECM2 Missense_Mutation p.R600C 0.40 tolerated(0.06) benign(0.009) TCGA-FP-A4BE-01 9 98241299 98241299 G A PTCH1 Nonsense_Mutation p.Q400* 0.26 TCGA-FP-A4BE-01 X 100625041 100625041 G A BTK Silent p.Y112Y 0.71 TCGA-FP-A4BE-01 X 100808255 100808255 G A ARMCX1 Silent p.T114T 0.32 TCGA-FP-A4BE-01 X 102192886 102192886 C T RAB40AL Missense_Mutation p.L214F 0.75 deleterious_low_confidence(0) probably_damaging(1) TCGA-FP-A4BE-01 X 103080412 103080412 C T RAB9B Nonsense_Mutation p.W101* 0.70 TCGA-FP-A4BE-01 X 103411455 103411455 C G FAM199X 5'UTR 0.33 TCGA-FP-A4BE-01 X 105011657 105011657 A - IL1RAPL2 3'UTR 0.43 TCGA-FP-A4BE-01 X 107224599 107224599 A G TEX13B Missense_Mutation p.L217P 0.06 tolerated(0.18) benign(0.019) TCGA-FP-A4BE-01 X 11157458 11157458 C T ARHGAP6 Missense_Mutation p.R817H 0.50 deleterious_low_confidence(0.02) benign(0.046) TCGA-FP-A4BE-01 X 11206974 11206974 T C ARHGAP6 Silent p.P317P 0.39 TCGA-FP-A4BE-01 X 118145831 118145831 C A LONRF3 Missense_Mutation p.P569H 0.09 deleterious(0) probably_damaging(1) TCGA-FP-A4BE-01 X 118604437 118604437 G A SLC25A5 Missense_Mutation p.V234I 0.30 tolerated(0.14) benign(0.062) TCGA-FP-A4BE-01 X 122599622 122599622 G A GRIA3 Missense_Mutation p.G808R 0.78 deleterious(0.03) possibly_damaging(0.708) TCGA-FP-A4BE-01 X 129147951 129147951 G A BCORL1 Silent p.T401T 0.17 TCGA-FP-A4BE-01 X 129200537 129200537 C T ELF4 3'UTR 0.44 TCGA-FP-A4BE-01 X 130419879 130419879 G A IGSF1 Missense_Mutation p.R81C 0.34 tolerated(0.06) benign(0.005) TCGA-FP-A4BE-01 X 132548849 132548849 G - GPC4 Frame_Shift_Del p.L49Sfs*9 0.45 TCGA-FP-A4BE-01 X 134185726 134185726 C T FAM127B 3'UTR 0.22 TCGA-FP-A4BE-01 X 148037457 148037457 A - AFF2 Frame_Shift_Del p.K629Nfs*126 0.18 TCGA-FP-A4BE-01 X 148579643 148579643 G T IDS Missense_Mutation p.P24T 0.80 deleterious(0.02) probably_damaging(0.998) TCGA-FP-A4BE-01 X 149638531 149638531 A G MAMLD1 Missense_Mutation p.H204R 0.72 tolerated(0.14) possibly_damaging(0.627) TCGA-FP-A4BE-01 X 149919529 149919529 C T MTMR1 Intron 0.63 TCGA-FP-A4BE-01 X 150345190 150345190 C T GPR50 5'UTR 0.73 TCGA-FP-A4BE-01 X 152159299 152159299 G A PNMA5 Missense_Mutation p.R282C 0.41 deleterious(0.03) possibly_damaging(0.886) TCGA-FP-A4BE-01 X 1531640 1531640 C T ASMTL Missense_Mutation p.E544K 0.56 tolerated(0.81) benign(0.015) TCGA-FP-A4BE-01 X 153247941 153247941 T C TMEM187 Missense_Mutation p.L143P 0.32 deleterious(0.01) probably_damaging(0.967) TCGA-FP-A4BE-01 X 153539340 153539340 C T TKTL1 Silent p.H168H 0.63 TCGA-FP-A4BE-01 X 153633399 153633399 A G DNASE1L1 Missense_Mutation p.V54A 0.17 deleterious(0) benign(0.302) TCGA-FP-A4BE-01 X 153693430 153693430 C T PLXNA3 Missense_Mutation p.R705W 0.82 deleterious(0) probably_damaging(0.947) TCGA-FP-A4BE-01 X 15526524 15526524 G A BMX Silent p.Q16Q 0.44 TCGA-FP-A4BE-01 X 2712609 2712609 G A XG Missense_Mutation p.R96H 0.11 tolerated(0.1) benign(0.001) TCGA-FP-A4BE-01 X 295108 295108 C T PPP2R3B Silent p.P574P 0.53 TCGA-FP-A4BE-01 X 3592695 3592695 G A PRKX Silent p.H93H 0.77 TCGA-FP-A4BE-01 X 40562801 40562801 G T MED14 Missense_Mutation p.P436T 0.44 tolerated(0.09) benign(0.057) TCGA-FP-A4BE-01 X 41203552 41203552 C T DDX3X Nonsense_Mutation p.Q309* 0.37 TCGA-FP-A4BE-01 X 46913962 46913962 C T JADE3 Nonsense_Mutation p.Q459* 0.64 TCGA-FP-A4BE-01 X 48687743 48687743 C T ERAS Silent p.H70H 0.68 TCGA-FP-A4BE-01 X 52681369 52681369 C T SSX7 Missense_Mutation p.M71I 0.73 deleterious(0) benign(0.126) TCGA-FP-A4BE-01 X 53432885 53432885 C T SMC1A Missense_Mutation p.G517S 0.74 deleterious(0.01) probably_damaging(0.998) TCGA-FP-A4BE-01 X 54048751 54048751 T - PHF8 Frame_Shift_Del p.K114Nfs*3 0.27 TCGA-FP-A4BE-01 X 54837468 54837468 G A MAGED2 Missense_Mutation p.R251H 0.64 tolerated(0.13) probably_damaging(0.998) TCGA-FP-A4BE-01 X 54989723 54989723 G A PFKFB1 Nonsense_Mutation p.R64* 0.73 TCGA-FP-A4BE-01 X 70387060 70387060 C T NLGN3 Silent p.H371H 0.76 TCGA-FP-A4BE-01 X 70643838 70643838 T C TAF1 Silent p.H1550H 0.68 TCGA-FP-A4BE-01 X 71360413 71360413 A - NHSL2 Frame_Shift_Del p.K1007Nfs*53 0.44 TCGA-FP-A4BE-01 X 73071210 73071210 C T XIST RNA 0.77 TCGA-FP-A4BE-01 X 96139285 96139287 CTC - RPA4 5'UTR 0.80 TCGA-FP-A4BF-01 10 119014801 119014801 C T SLC18A2 Silent p.F238F 0.21 TCGA-FP-A4BF-01 10 123244998 123244998 C T FGFR2 Silent p.S703S 0.27 TCGA-FP-A4BF-01 10 24820924 24820924 T C KIAA1217 Splice_Site p.X1082_splice 0.17 TCGA-FP-A4BF-01 10 54076175 54076175 C A DKK1 Nonsense_Mutation p.S176* 0.14 TCGA-FP-A4BF-01 10 58118611 58118611 C T ZWINT Missense_Mutation p.G193E 0.29 tolerated(0.85) benign(0.105) TCGA-FP-A4BF-01 11 124266426 124266428 AGA - OR8B3 In_Frame_Del p.S274del 0.13 TCGA-FP-A4BF-01 11 5699631 5699631 C T TRIM5 Missense_Mutation p.A183T 0.19 tolerated(0.88) benign(0.387) TCGA-FP-A4BF-01 11 60785482 60785482 T G CD6 Missense_Mutation p.S612A 0.20 tolerated(0.13) benign(0.049) TCGA-FP-A4BF-01 11 64537512 64537512 G A SF1 Missense_Mutation p.R260C 0.16 deleterious(0) probably_damaging(0.996) TCGA-FP-A4BF-01 11 67256814 67256814 G A AIP Missense_Mutation p.R119Q 0.31 tolerated(0.16) probably_damaging(0.997) TCGA-FP-A4BF-01 11 92532287 92532287 G T FAT3 Missense_Mutation p.Q2036H 0.19 possibly_damaging(0.797) TCGA-FP-A4BF-01 12 21377657 21377657 A G SLCO1B1 Silent p.G583G 0.48 TCGA-FP-A4BF-01 12 40013206 40013206 G A ABCD2 Missense_Mutation p.T71I 0.21 tolerated(0.23) benign(0.001) TCGA-FP-A4BF-01 12 40677750 40677750 G A LRRK2 Missense_Mutation p.R772Q 0.44 tolerated(0.08) probably_damaging(0.998) TCGA-FP-A4BF-01 12 56397724 56397739 CAGCCCTGAAGGTCAA - SUOX Frame_Shift_Del p.L186Sfs*13 0.11 TCGA-FP-A4BF-01 12 62147502 62147502 C G FAM19A2 Missense_Mutation p.W95C 0.06 deleterious(0) probably_damaging(1) TCGA-FP-A4BF-01 12 70954515 70954515 G A PTPRB Silent p.Y1456Y 0.28 TCGA-FP-A4BF-01 12 88379767 88379767 G A C12orf50 Missense_Mutation p.A329V 0.20 tolerated(0.2) benign(0.294) TCGA-FP-A4BF-01 12 94603439 94603439 A C PLXNC1 Missense_Mutation p.K505Q 0.25 tolerated(0.53) benign(0.001) TCGA-FP-A4BF-01 12 95228799 95228799 C T MIR492 3'Flank 0.28 TCGA-FP-A4BF-01 13 101712256 101712256 G A NALCN Missense_Mutation p.R1607W 0.28 deleterious(0.01) benign(0.28) TCGA-FP-A4BF-01 13 23907231 23907231 A G SACS Missense_Mutation p.L3595P 0.16 possibly_damaging(0.757) TCGA-FP-A4BF-01 13 36242611 36242611 G A NBEA Missense_Mutation p.G2902E 0.18 deleterious(0.03) possibly_damaging(0.833) TCGA-FP-A4BF-01 14 102552275 102552275 C A HSP90AA1 Missense_Mutation p.A239S 0.20 tolerated_low_confidence(0.11) possibly_damaging(0.536) TCGA-FP-A4BF-01 14 105416313 105416313 C G AHNAK2 Missense_Mutation p.M1825I 0.08 benign(0.229) TCGA-FP-A4BF-01 14 76964735 76964735 C T ESRRB Silent p.S412S 0.24 TCGA-FP-A4BF-01 14 81972485 81972485 T G SEL1L Missense_Mutation p.E147D 0.22 tolerated_low_confidence(0.31) benign(0.009) TCGA-FP-A4BF-01 15 25220656 25220656 A C SNRPN Missense_Mutation p.K52T 0.47 deleterious(0.01) probably_damaging(0.986) TCGA-FP-A4BF-01 15 78461297 78461297 T A IDH3A Missense_Mutation p.C351S 0.43 deleterious(0.04) probably_damaging(0.956) TCGA-FP-A4BF-01 16 1828608 1828608 G T SPSB3 Missense_Mutation p.S44R 0.26 deleterious_low_confidence(0.05) possibly_damaging(0.633) TCGA-FP-A4BF-01 16 3190925 3190925 C T ZNF213 Silent p.C319C 0.15 TCGA-FP-A4BF-01 16 55513517 55513517 C T MMP2 Silent p.A42A 0.10 TCGA-FP-A4BF-01 16 55584873 55584873 T A LPCAT2 Missense_Mutation p.D358E 0.21 tolerated(0.62) benign(0.021) TCGA-FP-A4BF-01 16 89351692 89351692 C T ANKRD11 Missense_Mutation p.V420M 0.23 benign(0.002) TCGA-FP-A4BF-01 16 89357494 89357494 G A ANKRD11 Silent p.G108G 0.12 TCGA-FP-A4BF-01 17 42030487 42030487 C T PYY Missense_Mutation p.V87I 0.24 tolerated(0.3) benign(0.001) TCGA-FP-A4BF-01 17 4837151 4837151 G A GP1BA Missense_Mutation p.A418T 0.23 tolerated(1) unknown(0) TCGA-FP-A4BF-01 17 56349209 56349209 T G MPO Missense_Mutation p.T613P 0.50 deleterious(0.04) benign(0.042) TCGA-FP-A4BF-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.48 deleterious(0) probably_damaging(0.997) TCGA-FP-A4BF-01 18 61652443 61652443 C T SERPINB8 Silent p.V228V 0.18 TCGA-FP-A4BF-01 18 7013889 7013889 C T LAMA1 Silent p.G1096G 0.12 TCGA-FP-A4BF-01 18 7231664 7231664 G A LRRC30 Silent p.A176A 0.15 TCGA-FP-A4BF-01 18 8394487 8394487 C T PTPRM Missense_Mutation p.R1408C 0.33 deleterious(0) probably_damaging(1) TCGA-FP-A4BF-01 19 1052101 1052101 C T ABCA7 Silent p.R1041R 0.17 TCGA-FP-A4BF-01 19 1912907 1912907 C T ADAT3 Silent p.D287D 0.34 TCGA-FP-A4BF-01 19 2043545 2043545 C A MKNK2 Missense_Mutation p.V126F 0.15 deleterious(0) probably_damaging(0.992) TCGA-FP-A4BF-01 19 41009902 41009902 C T SPTBN4 Missense_Mutation p.R510C 0.43 deleterious(0) possibly_damaging(0.575) TCGA-FP-A4BF-01 19 41354143 41354143 G A CYP2A6 Missense_Mutation p.T212M 0.45 benign(0.32) TCGA-FP-A4BF-01 19 58639529 58639529 T C ZNF329 Missense_Mutation p.T448A 0.37 tolerated(0.16) possibly_damaging(0.473) TCGA-FP-A4BF-01 19 9056839 9056839 A C MUC16 Missense_Mutation p.F10203V 0.19 benign(0) TCGA-FP-A4BF-01 19 9067293 9067293 A G MUC16 Missense_Mutation p.I6718T 0.24 unknown(0) TCGA-FP-A4BF-01 1 149763106 149763106 C T FCGR1A 3'UTR 0.09 TCGA-FP-A4BF-01 1 151021328 151021331 AGTA - C1orf56 Splice_Site p.X335_splice 0.41 TCGA-FP-A4BF-01 1 158986419 158986419 T A IFI16 Missense_Mutation p.S160T 0.09 tolerated(0.23) benign(0.159) TCGA-FP-A4BF-01 1 182847239 182847239 G A DHX9 Missense_Mutation p.R761Q 0.14 deleterious(0.02) possibly_damaging(0.508) TCGA-FP-A4BF-01 1 203134713 203134713 G A ADORA1 Silent p.P222P 0.14 TCGA-FP-A4BF-01 1 214792522 214792522 C T CENPF Nonsense_Mutation p.R178* 0.41 TCGA-FP-A4BF-01 1 225707053 225707053 C T ENAH Missense_Mutation p.E217K 0.10 tolerated_low_confidence(1) unknown(0) TCGA-FP-A4BF-01 1 237797008 237797008 T C RYR2 Missense_Mutation p.L2229P 0.33 probably_damaging(1) TCGA-FP-A4BF-01 1 46657809 46657809 G T POMGNT1 Missense_Mutation p.H500Q 0.12 probably_damaging(1) TCGA-FP-A4BF-01 20 21321389 21321389 A C XRN2 Missense_Mutation p.I437L 0.12 tolerated(0.69) benign(0.011) TCGA-FP-A4BF-01 20 2775009 2775009 A G CPXM1 Missense_Mutation p.Y678H 0.17 deleterious(0.03) possibly_damaging(0.904) TCGA-FP-A4BF-01 20 35399407 35399407 G T DSN1 Nonsense_Mutation p.S75* 0.23 TCGA-FP-A4BF-01 20 411102 411102 C T RBCK1 3'UTR 0.30 TCGA-FP-A4BF-01 20 44236710 44236710 G T WFDC9 3'UTR 0.12 TCGA-FP-A4BF-01 20 57042265 57042265 G C APCDD1L Missense_Mutation p.P213R 0.21 tolerated(0.3) possibly_damaging(0.754) TCGA-FP-A4BF-01 20 61981969 61981969 A G CHRNA4 Missense_Mutation p.F265S 0.27 deleterious(0) probably_damaging(1) TCGA-FP-A4BF-01 21 32493030 32493030 C T TIAM1 Missense_Mutation p.G1478R 0.47 tolerated(0.33) benign(0.006) TCGA-FP-A4BF-01 2 105473289 105473289 G A POU3F3 Missense_Mutation p.D441N 0.10 deleterious(0.03) benign(0.108) TCGA-FP-A4BF-01 2 120439335 120439335 G A TMEM177 Nonsense_Mutation p.W302* 0.16 TCGA-FP-A4BF-01 2 219319687 219319687 G A USP37 Missense_Mutation p.T969M 0.22 tolerated(0.31) benign(0.001) TCGA-FP-A4BF-01 2 238280829 238280829 G A COL6A3 Silent p.S1277S 0.22 TCGA-FP-A4BF-01 2 32703759 32703759 G A BIRC6 Silent p.V2375V 0.14 TCGA-FP-A4BF-01 2 39095333 39095333 C T DHX57 Missense_Mutation p.R72H 0.22 tolerated_low_confidence(0.22) benign(0.002) TCGA-FP-A4BF-01 2 40366764 40366764 G A SLC8A1 Silent p.F774F 0.07 TCGA-FP-A4BF-01 2 44175646 44175646 A G LRPPRC Missense_Mutation p.Y583H 0.39 deleterious(0.02) probably_damaging(0.99) TCGA-FP-A4BF-01 2 55462594 55462594 C T RPS27A Missense_Mutation p.R118C 0.08 tolerated(0.07) benign(0.002) TCGA-FP-A4BF-01 2 97463383 97463383 A G CNNM4 Silent p.T560T 0.14 TCGA-FP-A4BF-01 2 99439439 99439439 G A KIAA1211L Missense_Mutation p.R433C 0.15 deleterious(0.01) possibly_damaging(0.835) TCGA-FP-A4BF-01 3 108476024 108476024 C T RETNLB Silent p.P3P 0.13 TCGA-FP-A4BF-01 3 142567084 142567084 G T PCOLCE2 Missense_Mutation p.F141L 0.20 deleterious(0.01) possibly_damaging(0.465) TCGA-FP-A4BF-01 3 36422159 36422159 C T STAC Silent p.R8R 0.18 TCGA-FP-A4BF-01 3 49848017 49848017 A G UBA7 Missense_Mutation p.V467A 0.24 tolerated(0.3) benign(0.001) TCGA-FP-A4BF-01 4 110415869 110415869 G A SEC24B Missense_Mutation p.V449I 0.12 tolerated(0.36) benign(0.002) TCGA-FP-A4BF-01 4 114251533 114251533 G A ANK2 Missense_Mutation p.R1011H 0.17 probably_damaging(1) TCGA-FP-A4BF-01 4 154315457 154315457 T - MND1 Frame_Shift_Del p.I107Mfs*17 0.24 TCGA-FP-A4BF-01 4 155241936 155241936 C T DCHS2 Missense_Mutation p.G1084S 0.11 deleterious(0) probably_damaging(1) TCGA-FP-A4BF-01 4 40127824 40127824 A G N4BP2 Silent p.K1467K 0.28 TCGA-FP-A4BF-01 5 14713753 14713753 C T ANKH Missense_Mutation p.G389R 0.15 deleterious(0) possibly_damaging(0.723) TCGA-FP-A4BF-01 5 167689445 167689445 C A TENM2 Missense_Mutation p.S2652Y 0.33 deleterious(0.04) benign(0.188) TCGA-FP-A4BF-01 5 19838948 19838948 G A CDH18 Missense_Mutation p.R50C 0.12 deleterious(0) probably_damaging(0.985) TCGA-FP-A4BF-01 5 45396782 45396782 C T HCN1 Missense_Mutation p.A348T 0.08 deleterious(0) benign(0.202) TCGA-FP-A4BF-01 5 75993866 75993866 C T IQGAP2 Missense_Mutation p.L1421F 0.15 deleterious(0) probably_damaging(0.956) TCGA-FP-A4BF-01 5 88119664 88119664 C A MEF2C 5'UTR 0.13 TCGA-FP-A4BF-01 6 146720426 146720426 C T GRM1 Silent p.L751L 0.56 TCGA-FP-A4BF-01 6 149862660 149862660 C G PPIL4 Missense_Mutation p.V45L 0.15 deleterious(0) benign(0.119) TCGA-FP-A4BF-01 6 166580185 166580185 G A T Silent p.C122C 0.15 TCGA-FP-A4BF-01 6 31631743 31631743 C T GPANK1 Silent p.G171G 0.44 TCGA-FP-A4BF-01 6 51619732 51619732 T C PKHD1 Missense_Mutation p.I2883V 0.51 tolerated(0.3) benign(0.061) TCGA-FP-A4BF-01 6 74446106 74446106 G T CD109 Missense_Mutation p.D170Y 0.11 deleterious(0) probably_damaging(0.988) TCGA-FP-A4BF-01 6 74446205 74446205 G A CD109 Missense_Mutation p.D203N 0.08 tolerated(0.06) possibly_damaging(0.507) TCGA-FP-A4BF-01 6 74446228 74446228 G T CD109 Silent p.V210V 0.12 TCGA-FP-A4BF-01 7 150648900 150648900 C T KCNH2 Silent p.A527A 0.18 TCGA-FP-A4BF-01 7 27185407 27185407 G A HOXA6 Missense_Mutation p.A191V 0.55 deleterious(0) probably_damaging(0.984) TCGA-FP-A4BF-01 7 27194773 27194773 G A HOXA7 Missense_Mutation p.H150Y 0.55 deleterious(0) probably_damaging(0.996) TCGA-FP-A4BF-01 7 30963571 30963571 G A AQP1 3'UTR 0.50 TCGA-FP-A4BF-01 7 4011158 4011158 C T SDK1 Missense_Mutation p.T592M 0.08 tolerated(0.05) benign(0.149) TCGA-FP-A4BF-01 7 40900141 40900141 C A SUGCT 3'UTR 0.19 TCGA-FP-A4BF-01 7 4272903 4272903 C A SDK1 Missense_Mutation p.D1948E 0.08 tolerated(0.14) benign(0.304) TCGA-FP-A4BF-01 7 48259063 48259063 A G ABCA13 Missense_Mutation p.N134D 0.12 benign(0.079) TCGA-FP-A4BF-01 7 73922447 73922447 A G GTF2IRD1 Missense_Mutation p.N13D 0.26 deleterious_low_confidence(0.04) probably_damaging(0.98) TCGA-FP-A4BF-01 7 74538990 74538990 C T GTF2IRD2B Nonsense_Mutation p.R138* 0.07 TCGA-FP-A4BF-01 8 121444341 121444343 AAC - MRPL13 In_Frame_Del p.V58del 0.08 TCGA-FP-A4BF-01 8 133014047 133014047 A T EFR3A Missense_Mutation p.K733N 0.09 tolerated(0.13) benign(0.059) TCGA-FP-A4BF-01 8 89209481 89209481 G T MMP16 Missense_Mutation p.L63M 0.11 tolerated(1) possibly_damaging(0.658) TCGA-FP-A4BF-01 9 123935999 123935999 G A CNTRL Missense_Mutation p.R2244Q 0.11 benign(0.271) TCGA-FP-A4BF-01 9 178910 178910 A T CBWD1 Silent p.P20P 0.09 TCGA-FP-A4BF-01 9 19346918 19346918 A T DENND4C Missense_Mutation p.H1335L 0.13 tolerated(0.25) benign(0.187) TCGA-FP-A4BF-01 9 20923662 20923662 G A FOCAD Silent p.E952E 0.13 TCGA-FP-A4BF-01 9 36150911 36150911 A G GLIPR2 Missense_Mutation p.Y90C 0.19 deleterious(0) probably_damaging(0.999) TCGA-FP-A4BF-01 9 5797844 5797844 A C ERMP1 Missense_Mutation p.S787A 0.22 tolerated(0.14) benign(0.004) TCGA-FP-A4BF-01 9 84607801 84607801 G A SPATA31D1 Missense_Mutation p.E806K 0.07 tolerated(0.9) benign(0.025) TCGA-FP-A4BF-01 X 102632528 102632528 C T NGFRAP1 Missense_Mutation p.R37W 0.35 deleterious(0.05) benign(0) TCGA-FP-A4BF-01 X 125686062 125686062 T A DCAF12L1 Missense_Mutation p.Y177F 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-FP-A4BF-01 X 136113307 136113307 T C GPR101 Missense_Mutation p.D176G 0.54 deleterious(0) probably_damaging(0.998) TCGA-FP-A4BF-01 X 149905164 149905164 G A MTMR1 Missense_Mutation p.R385H 0.64 deleterious(0) benign(0.09) TCGA-FP-A4BF-01 X 44733193 44733193 T C KDM6A Missense_Mutation p.F62S 0.41 deleterious(0) benign(0.001) TCGA-FP-A8CX-01 10 105203066 105203066 C G PDCD11 Missense_Mutation p.I1700M 0.10 deleterious(0) probably_damaging(0.999) TCGA-FP-A8CX-01 10 123844802 123844803 AG - TACC2 Frame_Shift_Del p.E930Vfs*25 0.19 TCGA-FP-A8CX-01 10 131761995 131761995 G A EBF3 Missense_Mutation p.T13M 0.12 tolerated_low_confidence(0.06) benign(0.168) TCGA-FP-A8CX-01 10 50954832 50954832 C T OGDHL Silent p.T420T 0.10 TCGA-FP-A8CX-01 10 99330169 99330169 G T UBTD1 Missense_Mutation p.W191C 0.18 deleterious(0.02) probably_damaging(0.999) TCGA-FP-A8CX-01 11 122817341 122817341 C T C11orf63 Silent p.S590S 0.12 TCGA-FP-A8CX-01 11 55606937 55606937 G A OR5D16 Missense_Mutation p.R237H 0.24 tolerated(0.43) benign(0.052) TCGA-FP-A8CX-01 11 59345691 59345691 C T OSBP Missense_Mutation p.G664D 0.08 tolerated(0.19) benign(0.428) TCGA-FP-A8CX-01 12 16713406 16713406 C T LMO3 Missense_Mutation p.M113I 0.13 deleterious(0) probably_damaging(0.999) TCGA-FP-A8CX-01 12 27078742 27078742 G C ASUN Silent p.T209T 0.07 TCGA-FP-A8CX-01 12 62147467 62147467 C A FAM19A2 Missense_Mutation p.C107F 0.19 deleterious(0) probably_damaging(1) TCGA-FP-A8CX-01 12 7172542 7172542 G A C1S Missense_Mutation p.R219Q 0.23 tolerated(0.9) benign(0.043) TCGA-FP-A8CX-01 12 78531043 78531043 G C NAV3 Missense_Mutation p.D1510H 0.10 deleterious(0) probably_damaging(0.973) TCGA-FP-A8CX-01 12 88554483 88554483 G C TMTC3 Missense_Mutation p.A218P 0.11 tolerated(0.28) benign(0.373) TCGA-FP-A8CX-01 13 111088642 111088642 C T COL4A2 Silent p.N251N 0.10 TCGA-FP-A8CX-01 13 60707105 60707105 G A DIAPH3 Silent p.L67L 0.23 TCGA-FP-A8CX-01 14 24584818 24584818 C T DCAF11 Silent p.N5N 0.18 TCGA-FP-A8CX-01 15 25463672 25463672 C A SNORD115-27 5'Flank 0.09 TCGA-FP-A8CX-01 15 53809859 53809859 A T WDR72 3'UTR 0.32 TCGA-FP-A8CX-01 15 75664251 75664251 G T SIN3A 3'UTR 0.42 TCGA-FP-A8CX-01 15 99029151 99029151 G A FAM169B 5'UTR 0.25 TCGA-FP-A8CX-01 16 24358121 24358121 C A CACNG3 Missense_Mutation p.T93K 0.17 deleterious(0) possibly_damaging(0.497) TCGA-FP-A8CX-01 16 2580834 2580834 G A CEMP1 Missense_Mutation p.R81C 0.16 tolerated_low_confidence(0.13) possibly_damaging(0.835) TCGA-FP-A8CX-01 16 30005623 30005623 C T HIRIP3 Silent p.Q281Q 0.09 TCGA-FP-A8CX-01 16 3025436 3025436 G A PKMYT1 Silent p.F252F 0.08 TCGA-FP-A8CX-01 16 47292606 47292606 C T ITFG1 Missense_Mutation p.D423N 0.13 tolerated(0.3) benign(0.042) TCGA-FP-A8CX-01 16 53276863 53276863 G A CHD9 Missense_Mutation p.D997N 0.14 probably_damaging(0.999) TCGA-FP-A8CX-01 16 56918074 56918074 G A SLC12A3 Missense_Mutation p.V595M 0.14 deleterious(0) possibly_damaging(0.657) TCGA-FP-A8CX-01 16 68842633 68842633 A G CDH1 Missense_Mutation p.Y190C 0.27 deleterious(0) probably_damaging(1) TCGA-FP-A8CX-01 17 37884313 37884313 C T ERBB2 3'UTR 0.47 TCGA-FP-A8CX-01 17 38788581 38788581 C T SMARCE1 Missense_Mutation p.A194T 0.09 deleterious(0.03) benign(0.303) TCGA-FP-A8CX-01 17 73702444 73702446 GGG - SAP30BP In_Frame_Del p.W257_D258delinsY 0.17 TCGA-FP-A8CX-01 19 1272570 1272570 G A CIRBP 3'UTR 0.21 TCGA-FP-A8CX-01 19 56515244 56515244 A C NLRP5 Missense_Mutation p.E75D 0.12 deleterious(0.04) benign(0.231) TCGA-FP-A8CX-01 1 117297370 117297370 A - CD2 Frame_Shift_Del p.T62Lfs*31 0.31 TCGA-FP-A8CX-01 1 119936417 119936417 C T HAO2 Missense_Mutation p.S337L 0.09 deleterious(0) probably_damaging(0.975) TCGA-FP-A8CX-01 1 146726622 146726622 A T CHD1L Missense_Mutation p.E113V 0.08 deleterious(0) probably_damaging(0.996) TCGA-FP-A8CX-01 1 155013044 155013044 C T DCST1 Missense_Mutation p.R159C 0.33 deleterious(0) possibly_damaging(0.841) TCGA-FP-A8CX-01 1 157514644 157514644 T A FCRL5 Missense_Mutation p.N179I 0.11 deleterious(0.01) probably_damaging(0.985) TCGA-FP-A8CX-01 1 158151833 158151833 C A CD1D Missense_Mutation p.L114I 0.05 tolerated(1) benign(0.005) TCGA-FP-A8CX-01 1 159284373 159284373 A G OR10J3 Missense_Mutation p.L26P 0.16 tolerated(0.05) benign(0.03) TCGA-FP-A8CX-01 1 19166576 19166576 G A TAS1R2 Silent p.Y679Y 0.08 TCGA-FP-A8CX-01 1 209948708 209948708 G T TRAF3IP3 Missense_Mutation p.W263C 0.23 tolerated(0.06) benign(0.003) TCGA-FP-A8CX-01 1 210415639 210415639 C T SERTAD4 Missense_Mutation p.P343L 0.12 tolerated(1) possibly_damaging(0.713) TCGA-FP-A8CX-01 1 235359426 235359426 C T ARID4B Missense_Mutation p.D616N 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-FP-A8CX-01 1 237729890 237729890 G A RYR2 Missense_Mutation p.G1080S 0.13 benign(0) TCGA-FP-A8CX-01 20 30381793 30381795 AGG - TPX2 In_Frame_Del p.E552del 0.32 TCGA-FP-A8CX-01 20 3128560 3128560 G A FASTKD5 Missense_Mutation p.P386L 0.08 deleterious(0.01) possibly_damaging(0.718) TCGA-FP-A8CX-01 20 57568760 57568760 C T NELFCD Nonsense_Mutation p.R526* 0.13 TCGA-FP-A8CX-01 21 38878411 38878411 C T DYRK1A Missense_Mutation p.S519L 0.12 deleterious(0.02) benign(0.372) TCGA-FP-A8CX-01 22 30683477 30683477 C T GATSL3 Missense_Mutation p.G86D 0.12 tolerated(0.2) possibly_damaging(0.794) TCGA-FP-A8CX-01 2 101010037 101010037 C T CHST10 Silent p.P247P 0.10 TCGA-FP-A8CX-01 2 109492579 109492579 A G CCDC138 Missense_Mutation p.H623R 0.10 tolerated(0.1) benign(0.402) TCGA-FP-A8CX-01 2 11706633 11706633 G A GREB1 Missense_Mutation p.R102H 0.23 deleterious(0) probably_damaging(0.998) TCGA-FP-A8CX-01 2 133540639 133540639 T A NCKAP5 Nonsense_Mutation p.R1249* 0.07 TCGA-FP-A8CX-01 2 197705990 197705990 G C PGAP1 Missense_Mutation p.L913V 0.14 deleterious(0.05) probably_damaging(0.982) TCGA-FP-A8CX-01 2 210559207 210559207 A C MAP2 Missense_Mutation p.K771N 0.09 tolerated(0.09) benign(0.102) TCGA-FP-A8CX-01 2 234184414 234184414 C T ATG16L1 Intron 0.11 TCGA-FP-A8CX-01 2 25505422 25505422 G A DNMT3A Silent p.G112G 0.12 TCGA-FP-A8CX-01 2 26536714 26536714 G T GPR113 Missense_Mutation p.P397Q 0.21 deleterious(0) probably_damaging(0.961) TCGA-FP-A8CX-01 2 54035494 54035494 T C ERLEC1 Missense_Mutation p.I313T 0.11 tolerated(0.21) benign(0.007) TCGA-FP-A8CX-01 2 73315487 73315487 G C RAB11FIP5 Missense_Mutation p.P420R 0.11 tolerated(0.52) benign(0.059) TCGA-FP-A8CX-01 2 84676873 84676873 G A SUCLG1 Missense_Mutation p.P34L 0.14 tolerated_low_confidence(0.37) possibly_damaging(0.726) TCGA-FP-A8CX-01 2 89266206 89266206 G A IGKV1-6 Missense_Mutation p.P18S 0.13 tolerated(0.36) benign(0.115) TCGA-FP-A8CX-01 2 98797598 98797598 G A VWA3B Missense_Mutation p.D412N 0.08 deleterious(0.03) benign(0.066) TCGA-FP-A8CX-01 3 164735436 164735436 G A SI Missense_Mutation p.A1220V 0.20 deleterious(0.02) benign(0.262) TCGA-FP-A8CX-01 3 191888296 191888296 T C FGF12 Silent p.R188R 0.10 TCGA-FP-A8CX-01 3 196664469 196664469 G A NCBP2 Missense_Mutation p.T104M 0.12 deleterious(0.04) probably_damaging(0.928) TCGA-FP-A8CX-01 3 28365808 28365808 G A AZI2 Missense_Mutation p.P302S 0.18 deleterious(0.04) possibly_damaging(0.821) TCGA-FP-A8CX-01 3 52097353 52097353 T C LINC00696 Missense_Mutation p.Y72C 0.24 unknown(0) TCGA-FP-A8CX-01 4 121958414 121958414 T C NDNF Missense_Mutation p.M238V 0.09 tolerated(0.22) benign(0.001) TCGA-FP-A8CX-01 4 5862882 5862882 C A CRMP1 Missense_Mutation p.G176W 0.18 deleterious(0) probably_damaging(1) TCGA-FP-A8CX-01 4 9909897 9909897 T G SLC2A9 Missense_Mutation p.S359R 0.06 deleterious(0.03) probably_damaging(0.984) TCGA-FP-A8CX-01 5 1083880 1083880 G A SLC12A7 Missense_Mutation p.A370V 0.12 tolerated(0.58) benign(0.001) TCGA-FP-A8CX-01 5 112770403 112770403 C A TSSK1B Missense_Mutation p.R45L 0.19 deleterious(0) possibly_damaging(0.531) TCGA-FP-A8CX-01 5 120021909 120021909 G T PRR16 Silent p.V117V 0.12 TCGA-FP-A8CX-01 5 13719037 13719037 G A DNAH5 Silent p.N4151N 0.12 TCGA-FP-A8CX-01 5 139905678 139905678 A G ANKHD1 Silent p.K1530K 0.20 TCGA-FP-A8CX-01 5 148392216 148392216 C A SH3TC2 Missense_Mutation p.E1045D 0.14 deleterious(0.01) benign(0.358) TCGA-FP-A8CX-01 5 161302600 161302600 G T GABRA1 Nonsense_Mutation p.E171* 0.06 TCGA-FP-A8CX-01 5 167420138 167420138 C T TENM2 Silent p.S379S 0.07 TCGA-FP-A8CX-01 5 169504759 169504759 C T DOCK2 Missense_Mutation p.R1638C 0.11 deleterious(0.03) possibly_damaging(0.453) TCGA-FP-A8CX-01 5 21842426 21842426 T C CDH12 Missense_Mutation p.T220A 0.23 deleterious(0.04) probably_damaging(0.989) TCGA-FP-A8CX-01 5 3596411 3596411 C T IRX1 Silent p.Y64Y 0.38 TCGA-FP-A8CX-01 5 37000674 37000674 T C NIPBL Splice_Site p.X1168_splice 0.41 TCGA-FP-A8CX-01 5 41048497 41048497 G T MROH2B Missense_Mutation p.P538H 0.11 tolerated(0.47) benign(0.039) TCGA-FP-A8CX-01 5 53815310 53815310 C A SNX18 Missense_Mutation p.Q510K 0.12 deleterious(0.01) probably_damaging(0.991) TCGA-FP-A8CX-01 5 90086866 90086866 A T GPR98 Silent p.G4740G 0.10 TCGA-FP-A8CX-01 6 10881981 10881981 C T GCM2 Missense_Mutation p.G16R 0.16 deleterious(0.02) benign(0.29) TCGA-FP-A8CX-01 6 11105167 11105167 C G ERVFRD-1 Missense_Mutation p.C126S 0.16 deleterious(0) probably_damaging(0.981) TCGA-FP-A8CX-01 6 117683833 117683833 T A ROS1 Missense_Mutation p.N1105I 0.07 deleterious(0.03) benign(0.023) TCGA-FP-A8CX-01 6 147636830 147636830 T A STXBP5 Missense_Mutation p.Y528N 0.16 deleterious(0) possibly_damaging(0.498) TCGA-FP-A8CX-01 6 149924461 149924461 G A KATNA1 Silent p.A224A 0.13 TCGA-FP-A8CX-01 6 154732218 154732218 C A CNKSR3 Missense_Mutation p.G377C 0.12 tolerated(0.09) possibly_damaging(0.705) TCGA-FP-A8CX-01 6 160560786 160560786 C T SLC22A1 Missense_Mutation p.P388L 0.06 deleterious(0) probably_damaging(1) TCGA-FP-A8CX-01 7 33020083 33020084 TG - FKBP9 Frame_Shift_Del p.C271* 0.13 TCGA-FP-A8CX-01 7 38530700 38530700 C T AMPH Missense_Mutation p.G116R 0.19 tolerated(0.13) probably_damaging(0.995) TCGA-FP-A8CX-01 7 42187915 42187915 A T GLI3 Missense_Mutation p.S93T 0.09 deleterious_low_confidence(0.01) probably_damaging(0.991) TCGA-FP-A8CX-01 7 72658326 72658326 C T GTF2IRD2P1 RNA 0.11 TCGA-FP-A8CX-01 7 73010810 73010810 C G MLXIPL Splice_Site p.X608_splice 0.16 TCGA-FP-A8CX-01 7 79818436 79818436 G T GNAI1 Missense_Mutation p.E64D 0.07 tolerated(0.21) benign(0.003) TCGA-FP-A8CX-01 7 82763850 82763850 C A PCLO Nonsense_Mutation p.E1006* 0.26 TCGA-FP-A8CX-01 8 105503447 105503447 T G LRP12 Missense_Mutation p.K678N 0.25 deleterious(0.03) possibly_damaging(0.642) TCGA-FP-A8CX-01 8 106814510 106814510 C T ZFPM2 Missense_Mutation p.R734C 0.12 deleterious(0) probably_damaging(0.998) TCGA-FP-A8CX-01 8 113267523 113267523 T C CSMD3 Silent p.Q3332Q 0.05 TCGA-FP-A8CX-01 8 113599332 113599332 G T CSMD3 Missense_Mutation p.A1283D 0.19 deleterious(0) probably_damaging(0.996) TCGA-FP-A8CX-01 8 114389010 114389010 G T CSMD3 Intron 0.11 TCGA-FP-A8CX-01 8 24178860 24178860 T C ADAM28 Intron 0.15 TCGA-FP-A8CX-01 8 41554025 41554025 G A ANK1 Missense_Mutation p.P980L 0.13 deleterious(0) probably_damaging(0.995) TCGA-FP-A8CX-01 8 53570276 53570276 T C RB1CC1 Missense_Mutation p.I705V 0.11 deleterious_low_confidence(0.01) benign(0.009) TCGA-FP-A8CX-01 9 107332409 107332409 T G OR13C8 Nonstop_Mutation p.*321Gext*? 0.25 TCGA-FP-A8CX-01 9 130551828 130551828 G A CDK9 3'UTR 0.14 TCGA-FP-A8CX-01 9 21350374 21350374 G T IFNA6 Silent p.I171I 0.11 TCGA-FP-A8CX-01 X 109696365 109696365 C A RGAG1 Silent p.P840P 0.37 TCGA-FP-A8CX-01 X 144905927 144905927 G A SLITRK2 Missense_Mutation p.V662I 0.12 tolerated(0.37) benign(0.004) TCGA-FP-A8CX-01 X 26157119 26157119 A C MAGEB18 Missense_Mutation p.K6T 0.33 deleterious(0.01) probably_damaging(0.99) TCGA-FP-A8CX-01 X 2773169 2773169 C A GYG2 Missense_Mutation p.H185N 0.09 tolerated(0.13) possibly_damaging(0.746) TCGA-FP-A8CX-01 X 32305763 32305763 T G DMD Missense_Mutation p.K2058T 0.27 possibly_damaging(0.607) TCGA-FP-A8CX-01 X 73062518 73062518 G A XIST RNA 0.29 TCGA-FP-A9TM-01 10 105200538 105200538 C T PDCD11 Silent p.D1496D 0.32 TCGA-FP-A9TM-01 10 14563302 14563302 C T FAM107B Missense_Mutation p.E270K 0.19 deleterious(0.02) probably_damaging(0.994) TCGA-FP-A9TM-01 10 24790441 24790441 C T KIAA1217 Silent p.L656L 0.25 TCGA-FP-A9TM-01 10 30915774 30915774 C T LYZL2 Missense_Mutation p.R70H 0.12 deleterious(0.02) benign(0.025) TCGA-FP-A9TM-01 10 7773942 7773942 G A ITIH2 Missense_Mutation p.V544I 0.12 tolerated(0.8) benign(0.001) TCGA-FP-A9TM-01 10 81272564 81272564 C T EIF5AL1 Silent p.H53H 0.13 TCGA-FP-A9TM-01 10 92617104 92617104 C T HTR7 Missense_Mutation p.V109I 0.12 deleterious(0.01) probably_damaging(0.982) TCGA-FP-A9TM-01 10 97917462 97917462 G A ZNF518A RNA 0.32 TCGA-FP-A9TM-01 11 102993722 102993722 G T DYNC2H1 Missense_Mutation p.G552C 0.31 probably_damaging(0.927) TCGA-FP-A9TM-01 11 123988407 123988407 T C VWA5A Missense_Mutation p.V24A 0.09 deleterious(0) benign(0.256) TCGA-FP-A9TM-01 11 124518007 124518007 G A SIAE Missense_Mutation p.H263Y 0.08 deleterious(0.02) benign(0.247) TCGA-FP-A9TM-01 11 17793846 17793846 G A KCNC1 Missense_Mutation p.G402D 0.10 deleterious(0) probably_damaging(1) TCGA-FP-A9TM-01 11 47360202 47360202 C T MYBPC3 Missense_Mutation p.R726H 0.13 tolerated(0.35) benign(0.011) TCGA-FP-A9TM-01 11 48286090 48286090 C A OR4X1 Missense_Mutation p.H226Q 0.12 tolerated(0.26) benign(0.006) TCGA-FP-A9TM-01 11 55322026 55322026 G T OR4C15 Missense_Mutation p.V82L 0.09 tolerated_low_confidence(0.19) benign(0.006) TCGA-FP-A9TM-01 11 6661710 6661710 C T DCHS1 Missense_Mutation p.A379T 0.14 tolerated(0.11) probably_damaging(1) TCGA-FP-A9TM-01 11 73022572 73022572 C T ARHGEF17 Silent p.P963P 0.14 TCGA-FP-A9TM-01 11 73429893 73429893 G A RAB6A Missense_Mutation p.R76C 0.33 deleterious(0) possibly_damaging(0.668) TCGA-FP-A9TM-01 11 86158221 86158221 C T ME3 Silent p.T422T 0.35 TCGA-FP-A9TM-01 11 9048992 9048992 G A SCUBE2 Missense_Mutation p.R817C 0.26 deleterious(0.02) probably_damaging(0.999) TCGA-FP-A9TM-01 12 104715062 104715062 A T TXNRD1 Missense_Mutation p.I395F 0.10 deleterious(0) possibly_damaging(0.854) TCGA-FP-A9TM-01 12 120599293 120599293 C T GCN1L1 Splice_Site p.X812_splice 0.04 TCGA-FP-A9TM-01 12 123069447 123069447 A C KNTC1 Missense_Mutation p.L1148F 0.43 deleterious(0.03) benign(0.276) TCGA-FP-A9TM-01 12 124330581 124330581 G A DNAH10 Silent p.P1780P 0.10 TCGA-FP-A9TM-01 12 133324764 133324764 C T ANKLE2 Missense_Mutation p.R334Q 0.12 deleterious(0) probably_damaging(0.999) TCGA-FP-A9TM-01 12 1983839 1983839 C T CACNA2D4 Silent p.L603L 0.17 TCGA-FP-A9TM-01 12 32135402 32135402 C T KIAA1551 Missense_Mutation p.P505S 0.12 tolerated(0.12) benign(0.046) TCGA-FP-A9TM-01 12 32884797 32884797 C G DNM1L Missense_Mutation p.R456G 0.29 deleterious(0) probably_damaging(0.99) TCGA-FP-A9TM-01 12 47629086 47629086 C T PCED1B Silent p.R80R 0.12 TCGA-FP-A9TM-01 12 5020972 5020972 C A KCNA1 Missense_Mutation p.P143H 0.09 deleterious(0.01) possibly_damaging(0.836) TCGA-FP-A9TM-01 12 52946763 52946763 C T KRT71 Silent p.R33R 0.12 TCGA-FP-A9TM-01 12 56552423 56552423 G A MYL6 Intron 0.12 TCGA-FP-A9TM-01 12 56552439 56552439 T C MYL6 Intron 0.13 TCGA-FP-A9TM-01 12 68553397 68553397 G A IFNG 5'UTR 0.11 TCGA-FP-A9TM-01 12 7310163 7310163 G A CLSTN3 Missense_Mutation p.R869H 0.21 deleterious(0.01) probably_damaging(0.909) TCGA-FP-A9TM-01 12 76749784 76749784 C T OSBPL8 Missense_Mutation p.R852Q 0.16 tolerated(0.59) possibly_damaging(0.889) TCGA-FP-A9TM-01 13 103282445 103282445 G A TPP2 Splice_Site p.X382_splice 0.12 TCGA-FP-A9TM-01 13 111928031 111928031 G T ARHGEF7 Intron 0.05 TCGA-FP-A9TM-01 13 21562161 21562161 G A LATS2 Silent p.D586D 0.05 TCGA-FP-A9TM-01 13 28908168 28908168 G T FLT1 Missense_Mutation p.L863M 0.07 deleterious(0) probably_damaging(1) TCGA-FP-A9TM-01 14 102477092 102477092 G A DYNC1H1 Missense_Mutation p.V2141I 0.12 benign(0.031) TCGA-FP-A9TM-01 14 27064638 27064641 AGAC - NOVA1 Frame_Shift_Del p.K87Pfs*14 0.14 TCGA-FP-A9TM-01 14 39565270 39565270 C T SEC23A Missense_Mutation p.R18Q 0.10 deleterious(0.02) probably_damaging(0.966) TCGA-FP-A9TM-01 14 70713861 70713861 A T ADAM21P1 RNA 0.06 TCGA-FP-A9TM-01 14 73717661 73717661 A G PAPLN Missense_Mutation p.K171R 0.06 deleterious(0.03) benign(0.387) TCGA-FP-A9TM-01 14 86087980 86087980 G A FLRT2 Missense_Mutation p.R41H 0.22 deleterious(0) probably_damaging(1) TCGA-FP-A9TM-01 14 94756466 94756466 G T SERPINA10 Missense_Mutation p.N155K 0.11 deleterious(0) possibly_damaging(0.849) TCGA-FP-A9TM-01 15 102346286 102346286 C T OR4F6 Nonsense_Mutation p.R122* 0.07 TCGA-FP-A9TM-01 15 25322204 25322204 A T SNORD116-12 RNA 0.08 TCGA-FP-A9TM-01 15 40661876 40661876 G A DISP2 Missense_Mutation p.R1188Q 0.04 deleterious(0.03) benign(0.177) TCGA-FP-A9TM-01 15 43552720 43552720 G A TGM5 Missense_Mutation p.T23M 0.08 deleterious(0.01) probably_damaging(1) TCGA-FP-A9TM-01 15 44038867 44038867 T C PDIA3 Missense_Mutation p.S44P 0.18 tolerated(0.05) benign(0.056) TCGA-FP-A9TM-01 15 53957852 53957852 T G WDR72 Missense_Mutation p.K627Q 0.22 tolerated(0.15) possibly_damaging(0.459) TCGA-FP-A9TM-01 15 86311782 86311782 C T KLHL25 Silent p.G420G 0.07 TCGA-FP-A9TM-01 15 89384998 89384998 C T ACAN Silent p.G219G 0.11 TCGA-FP-A9TM-01 16 2816493 2816493 G A SRRM2 Silent p.P1988P 0.28 TCGA-FP-A9TM-01 16 55903557 55903557 C T CES5A Missense_Mutation p.V202I 0.06 tolerated(1) benign(0.005) TCGA-FP-A9TM-01 16 89869665 89869665 A G FANCA Splice_Site p.X264_splice 0.18 TCGA-FP-A9TM-01 17 11593498 11593498 C T DNAH9 Silent p.P1453P 0.11 TCGA-FP-A9TM-01 17 1637117 1637117 G A WDR81 Missense_Mutation p.G1596R 0.09 tolerated(0.52) benign(0.001) TCGA-FP-A9TM-01 17 2297369 2297369 T G MNT Missense_Mutation p.S259R 0.10 deleterious(0) benign(0.222) TCGA-FP-A9TM-01 17 39553197 39553197 G A KRT31 Silent p.N133N 0.22 TCGA-FP-A9TM-01 17 74090640 74090640 C T EXOC7 Silent p.Q221Q 0.13 TCGA-FP-A9TM-01 17 7464346 7464346 T G TNFSF12-TNFSF13 3'UTR 0.28 TCGA-FP-A9TM-01 17 7578394 7578394 T C TP53 Missense_Mutation p.H179R 0.21 deleterious(0) probably_damaging(1) TCGA-FP-A9TM-01 17 79176070 79176070 C T AZI1 Missense_Mutation p.R253Q 0.17 deleterious(0.04) benign(0.25) TCGA-FP-A9TM-01 18 2891182 2891182 C A EMILIN2 Missense_Mutation p.Q353K 0.13 tolerated(0.15) probably_damaging(0.991) TCGA-FP-A9TM-01 18 32822693 32822693 G A ZNF397 Missense_Mutation p.E87K 0.22 deleterious(0) probably_damaging(0.998) TCGA-FP-A9TM-01 18 47369686 47369686 C T MYO5B Silent p.A1512A 0.06 TCGA-FP-A9TM-01 18 53252585 53252585 T A TCF4 Splice_Site p.X127_splice 0.04 TCGA-FP-A9TM-01 18 74091302 74091302 C T ZNF516 Missense_Mutation p.G923E 0.22 deleterious(0) possibly_damaging(0.826) TCGA-FP-A9TM-01 18 9559488 9559488 C T PPP4R1 Missense_Mutation p.A653T 0.15 deleterious(0) possibly_damaging(0.764) TCGA-FP-A9TM-01 19 15571900 15571900 C A RASAL3 Missense_Mutation p.A193S 0.27 tolerated(0.38) benign(0.032) TCGA-FP-A9TM-01 19 19766965 19766965 G A ATP13A1 Missense_Mutation p.R371W 0.12 deleterious(0.01) possibly_damaging(0.791) TCGA-FP-A9TM-01 19 20829212 20829212 C A ZNF626 Splice_Site p.X2_splice 0.07 TCGA-FP-A9TM-01 19 36430559 36430559 G A LRFN3 Missense_Mutation p.D78N 0.42 deleterious(0) probably_damaging(0.996) TCGA-FP-A9TM-01 19 38028655 38028655 G T ZNF793 Missense_Mutation p.K365N 0.15 deleterious(0) probably_damaging(0.983) TCGA-FP-A9TM-01 19 3907742 3907742 C T ATCAY Silent p.P123P 0.22 TCGA-FP-A9TM-01 19 43242958 43242958 G T PSG3 Missense_Mutation p.D116E 0.10 deleterious(0) possibly_damaging(0.899) TCGA-FP-A9TM-01 19 44536197 44536197 C G ZNF222 Missense_Mutation p.Q164E 0.22 tolerated(0.34) benign(0.053) TCGA-FP-A9TM-01 19 51582848 51582848 G A KLK14 Silent p.H124H 0.29 TCGA-FP-A9TM-01 19 53217318 53217318 G T ZNF611 Missense_Mutation p.A47D 0.25 deleterious(0.01) possibly_damaging(0.604) TCGA-FP-A9TM-01 19 54080980 54080980 G A ZNF331 Missense_Mutation p.G389E 0.07 deleterious(0.03) probably_damaging(1) TCGA-FP-A9TM-01 19 58048579 58048579 G T ZNF549 Missense_Mutation p.L69F 0.29 tolerated(0.16) benign(0.007) TCGA-FP-A9TM-01 19 58967601 58967601 C T ZNF324B Silent p.C430C 0.29 TCGA-FP-A9TM-01 19 8551129 8551129 G A HNRNPM Missense_Mutation p.R606H 0.18 tolerated(0.07) benign(0.003) TCGA-FP-A9TM-01 19 9048951 9048951 G T MUC16 Missense_Mutation p.P10894T 0.19 benign(0.001) TCGA-FP-A9TM-01 19 9057280 9057280 G A MUC16 Missense_Mutation p.P10056S 0.34 benign(0.003) TCGA-FP-A9TM-01 1 109707269 109707269 G A KIAA1324 Missense_Mutation p.M141I 0.10 tolerated(0.09) benign(0.004) TCGA-FP-A9TM-01 1 1254783 1254783 G A CPSF3L Missense_Mutation p.R114C 0.09 tolerated(0.11) probably_damaging(0.999) TCGA-FP-A9TM-01 1 152059755 152059755 G T TCHHL1 Missense_Mutation p.P135T 0.20 deleterious(0) probably_damaging(0.959) TCGA-FP-A9TM-01 1 156100449 156100449 G T LMNA Missense_Mutation p.R133L 0.14 deleterious(0) possibly_damaging(0.736) TCGA-FP-A9TM-01 1 156100522 156100522 G T LMNA Silent p.T157T 0.42 TCGA-FP-A9TM-01 1 169847834 169847834 C T SCYL3 Missense_Mutation p.A98T 0.12 tolerated(0.42) possibly_damaging(0.507) TCGA-FP-A9TM-01 1 171178032 171178032 C T FMO2 Silent p.L452L 0.04 TCGA-FP-A9TM-01 1 176760496 176760496 G T PAPPA2 Missense_Mutation p.C1633F 0.14 deleterious(0) probably_damaging(0.999) TCGA-FP-A9TM-01 1 190068069 190068069 G A BRINP3 Silent p.C460C 0.17 TCGA-FP-A9TM-01 1 210857198 210857198 A G KCNH1 Missense_Mutation p.S799P 0.10 tolerated(0.18) benign(0) TCGA-FP-A9TM-01 1 222712032 222712032 G A HHIPL2 Missense_Mutation p.P512L 0.07 deleterious(0.05) possibly_damaging(0.452) TCGA-FP-A9TM-01 1 228335194 228335194 C T GUK1 Silent p.T134T 0.16 TCGA-FP-A9TM-01 1 248005197 248005197 A G OR11L1 Translation_Start_Site p.M1? 0.15 deleterious(0) benign(0.122) TCGA-FP-A9TM-01 1 36603533 36603533 C T TRAPPC3 Nonsense_Mutation p.W96* 0.16 TCGA-FP-A9TM-01 1 41098768 41098768 G A RIMS3 Nonsense_Mutation p.R149* 0.08 TCGA-FP-A9TM-01 1 42620456 42620456 G A GUCA2B Missense_Mutation p.V66M 0.17 tolerated(0.15) benign(0.185) TCGA-FP-A9TM-01 1 74507273 74507273 C T LRRIQ3 Missense_Mutation p.V448I 0.15 tolerated(0.79) benign(0.001) TCGA-FP-A9TM-01 1 75097422 75097422 T C C1orf173 Missense_Mutation p.N265S 0.10 deleterious(0) benign(0.257) TCGA-FP-A9TM-01 1 78481799 78481799 T C DNAJB4 Silent p.I294I 0.14 TCGA-FP-A9TM-01 1 92518119 92518119 G A EPHX4 Missense_Mutation p.C254Y 0.19 tolerated(1) possibly_damaging(0.657) TCGA-FP-A9TM-01 20 19662565 19662565 C T SLC24A3 Silent p.N277N 0.14 TCGA-FP-A9TM-01 20 20258081 20258081 G T C20orf26 Missense_Mutation p.K925N 0.10 deleterious(0.04) benign(0.402) TCGA-FP-A9TM-01 20 31019282 31019282 A G ASXL1 Missense_Mutation p.R293G 0.27 deleterious(0) probably_damaging(0.999) TCGA-FP-A9TM-01 20 35064592 35064592 G A DLGAP4 Silent p.P360P 0.22 TCGA-FP-A9TM-01 20 36997774 36997774 T A LBP Missense_Mutation p.S373T 0.11 deleterious(0.05) possibly_damaging(0.536) TCGA-FP-A9TM-01 20 45947740 45947740 G C AL031666.2 Missense_Mutation p.V126L 0.21 unknown(0) TCGA-FP-A9TM-01 20 47266570 47266570 G A PREX1 Missense_Mutation p.R998C 0.08 deleterious(0) probably_damaging(0.985) TCGA-FP-A9TM-01 20 57042543 57042543 C T APCDD1L Silent p.R120R 0.19 TCGA-FP-A9TM-01 20 57415193 57415193 G A RP4-806M20.3 5'Flank 0.19 TCGA-FP-A9TM-01 20 5843810 5843810 G T C20orf196 Missense_Mutation p.G107C 0.31 tolerated(0.41) probably_damaging(0.971) TCGA-FP-A9TM-01 20 62172300 62172300 C T SRMS Silent p.P446P 0.07 TCGA-FP-A9TM-01 20 62595880 62595880 C T ZNF512B Silent p.A408A 0.30 TCGA-FP-A9TM-01 21 47549137 47549137 C T COL6A2 Intron 0.09 TCGA-FP-A9TM-01 22 26937194 26937194 C T TPST2 Missense_Mutation p.A135T 0.55 tolerated(0.06) benign(0.063) TCGA-FP-A9TM-01 22 31500415 31500415 G A SMTN Missense_Mutation p.R929Q 0.33 deleterious(0) probably_damaging(0.995) TCGA-FP-A9TM-01 22 37272122 37272122 G T NCF4 3'UTR 0.18 TCGA-FP-A9TM-01 22 50893742 50893742 G A SBF1 Missense_Mutation p.R1489C 0.31 deleterious(0.01) probably_damaging(0.997) TCGA-FP-A9TM-01 22 50962075 50962075 G A SCO2 Missense_Mutation p.R256W 0.09 deleterious(0.02) possibly_damaging(0.581) TCGA-FP-A9TM-01 2 116066915 116066915 T A DPP10 Missense_Mutation p.I58N 0.07 deleterious(0) probably_damaging(0.964) TCGA-FP-A9TM-01 2 11758784 11758784 G A GREB1 Silent p.L1261L 0.40 TCGA-FP-A9TM-01 2 11761033 11761033 C T GREB1 Silent p.I1349I 0.13 TCGA-FP-A9TM-01 2 137928507 137928507 C T THSD7B Silent p.R574R 0.14 TCGA-FP-A9TM-01 2 141609255 141609255 C G LRP1B Missense_Mutation p.L1559F 0.27 benign(0.001) TCGA-FP-A9TM-01 2 145157807 145157807 T C ZEB2 Missense_Mutation p.K316R 0.06 deleterious(0) probably_damaging(0.998) TCGA-FP-A9TM-01 2 166201249 166201249 A G SCN2A Missense_Mutation p.N916S 0.33 tolerated(0.91) benign(0.001) TCGA-FP-A9TM-01 2 167055964 167055964 C A SCN9A Missense_Mutation p.D1718Y 0.10 deleterious(0) probably_damaging(0.998) TCGA-FP-A9TM-01 2 190320060 190320060 G T WDR75 Missense_Mutation p.V130F 0.08 deleterious(0.01) possibly_damaging(0.628) TCGA-FP-A9TM-01 2 1983312 1983312 C A MYT1L Missense_Mutation p.A24S 0.21 tolerated(0.79) unknown(0) TCGA-FP-A9TM-01 2 241700750 241700750 G A KIF1A Missense_Mutation p.R721W 0.47 deleterious(0.01) probably_damaging(0.982) TCGA-FP-A9TM-01 2 42671038 42671038 T A KCNG3 3'UTR 0.20 TCGA-FP-A9TM-01 2 74725100 74725100 T G LBX2 Missense_Mutation p.D180A 0.25 tolerated(0.18) benign(0.242) TCGA-FP-A9TM-01 2 95715448 95715448 C T MAL Silent p.A128A 0.14 TCGA-FP-A9TM-01 3 119886525 119886525 C T GPR156 Missense_Mutation p.R600K 0.28 deleterious(0.03) benign(0.341) TCGA-FP-A9TM-01 3 142537067 142537067 G T PCOLCE2 3'UTR 0.10 TCGA-FP-A9TM-01 3 147130324 147130324 C T ZIC1 Silent p.C334C 0.07 TCGA-FP-A9TM-01 3 183226172 183226173 CT - KLHL6 Frame_Shift_Del p.S195Lfs*13 0.23 TCGA-FP-A9TM-01 3 25792731 25792731 T C NGLY1 Silent p.L172L 0.25 TCGA-FP-A9TM-01 3 46307308 46307308 C A CCR3 Missense_Mutation p.T241K 0.10 deleterious(0) possibly_damaging(0.743) TCGA-FP-A9TM-01 3 52396411 52396411 G A DNAH1 Missense_Mutation p.R1663H 0.19 benign(0.226) TCGA-FP-A9TM-01 3 53220651 53220651 A G PRKCD Missense_Mutation p.N431S 0.09 deleterious(0.02) benign(0.021) TCGA-FP-A9TM-01 3 64601737 64601737 C A ADAMTS9 Missense_Mutation p.V975F 0.12 deleterious(0) possibly_damaging(0.768) TCGA-FP-A9TM-01 3 66023984 66023984 G A MAGI1 5'Flank 0.15 TCGA-FP-A9TM-01 3 67570996 67570996 C A SUCLG2 Silent p.R160R 0.05 TCGA-FP-A9TM-01 3 69124609 69124609 C A UBA3 Missense_Mutation p.G79V 0.12 deleterious(0) probably_damaging(1) TCGA-FP-A9TM-01 3 7456777 7456777 C A GRM7 Nonsense_Mutation p.Y367* 0.13 TCGA-FP-A9TM-01 3 89259427 89259427 G T EPHA3 Missense_Mutation p.A191S 0.10 tolerated(0.32) probably_damaging(0.994) TCGA-FP-A9TM-01 4 149357221 149357221 C T NR3C2 Silent p.P264P 0.07 TCGA-FP-A9TM-01 4 159627964 159627964 C T ETFDH Missense_Mutation p.S551L 0.21 deleterious(0.02) benign(0.004) TCGA-FP-A9TM-01 4 178256869 178256869 C T NEIL3 Silent p.I102I 0.06 TCGA-FP-A9TM-01 4 22749494 22749494 G T GBA3 Nonsense_Mutation p.E288* 0.14 TCGA-FP-A9TM-01 4 40122695 40122695 A G N4BP2 Silent p.G988G 0.06 TCGA-FP-A9TM-01 4 70460179 70460194 GAGCCTTAGTACTTAC - UGT2A1 Splice_Site p.X601_splice 0.35 TCGA-FP-A9TM-01 4 96762459 96762459 C T PDHA2 Silent p.S386S 0.21 TCGA-FP-A9TM-01 5 101593680 101593680 C T SLCO4C1 Missense_Mutation p.G414R 0.26 deleterious(0) possibly_damaging(0.893) TCGA-FP-A9TM-01 5 118968553 118968553 G A FAM170A Missense_Mutation p.V61I 0.18 tolerated(0.19) benign(0.085) TCGA-FP-A9TM-01 5 137426753 137426753 C A WNT8A Silent p.G349G 0.16 TCGA-FP-A9TM-01 5 140189049 140189049 C G PCDHA4 Missense_Mutation p.C759W 0.16 deleterious_low_confidence(0) benign(0.062) TCGA-FP-A9TM-01 5 175111232 175111232 C A HRH2 Silent p.P332P 0.24 TCGA-FP-A9TM-01 5 179320369 179320369 G T TBC1D9B Missense_Mutation p.L226I 0.24 tolerated(0.1) benign(0.334) TCGA-FP-A9TM-01 5 180651586 180651586 G A TRIM41 Missense_Mutation p.R196H 0.15 deleterious(0.02) possibly_damaging(0.646) TCGA-FP-A9TM-01 5 26885777 26885777 C T CDH9 Missense_Mutation p.G610S 0.28 tolerated(0.23) probably_damaging(0.999) TCGA-FP-A9TM-01 5 71492630 71492630 G A MAP1B Missense_Mutation p.E1150K 0.24 possibly_damaging(0.81) TCGA-FP-A9TM-01 5 92929393 92929393 C T NR2F1 Nonsense_Mutation p.R373* 0.21 TCGA-FP-A9TM-01 6 106547174 106547174 G A PRDM1 Splice_Site p.X138_splice 0.05 TCGA-FP-A9TM-01 6 126359948 126359948 G A TRMT11 Missense_Mutation p.R453K 0.05 tolerated(0.36) benign(0.005) TCGA-FP-A9TM-01 6 127771030 127771030 G A KIAA0408 Missense_Mutation p.A172V 0.11 deleterious(0.01) benign(0.131) TCGA-FP-A9TM-01 6 138734047 138734047 G A HEBP2 Silent p.K150K 0.13 TCGA-FP-A9TM-01 6 15452316 15452316 C G JARID2 Missense_Mutation p.P135A 0.08 tolerated(0.21) benign(0.323) TCGA-FP-A9TM-01 6 18258615 18258615 C T DEK Missense_Mutation p.G56D 0.05 deleterious(0.01) benign(0.29) TCGA-FP-A9TM-01 6 25779370 25779370 C A SLC17A4 Missense_Mutation p.A483E 0.11 deleterious(0) probably_damaging(0.972) TCGA-FP-A9TM-01 6 27791903 27791903 A G HIST1H4J Translation_Start_Site p.M1? 0.11 tolerated_low_confidence(0.09) unknown(0) TCGA-FP-A9TM-01 6 43307449 43307449 T C ZNF318 Silent p.E1429E 0.11 TCGA-FP-A9TM-01 7 100776988 100776988 C T SERPINE1 Missense_Mutation p.T238M 0.15 deleterious(0) probably_damaging(0.998) TCGA-FP-A9TM-01 7 106513384 106513384 G T PIK3CG Splice_Site p.X763_splice 0.09 TCGA-FP-A9TM-01 7 124404490 124404490 A T GPR37 Missense_Mutation p.Y181N 0.09 tolerated(0.15) benign(0.441) TCGA-FP-A9TM-01 7 150768838 150768838 G A SLC4A2 Missense_Mutation p.V752M 0.13 deleterious(0.02) benign(0.075) TCGA-FP-A9TM-01 7 151880236 151880236 T - KMT2C Frame_Shift_Del p.A1697Pfs*20 0.16 TCGA-FP-A9TM-01 7 157155931 157155931 C T DNAJB6 Nonsense_Mutation p.Q48* 0.21 TCGA-FP-A9TM-01 7 32956866 32956866 C T RP9P RNA 0.14 TCGA-FP-A9TM-01 7 44266227 44266227 G T CAMK2B Missense_Mutation p.D495E 0.14 tolerated_low_confidence(0.59) benign(0.417) TCGA-FP-A9TM-01 7 79082384 79082384 C T MAGI2 Missense_Mutation p.V85M 0.13 deleterious(0) probably_damaging(0.998) TCGA-FP-A9TM-01 7 91735033 91735033 C T AKAP9 Missense_Mutation p.S3791F 0.09 possibly_damaging(0.872) TCGA-FP-A9TM-01 7 931994 931994 G A GET4 Missense_Mutation p.G229R 0.13 deleterious(0.01) benign(0.318) TCGA-FP-A9TM-01 7 94054924 94054924 C A COL1A2 Silent p.G928G 0.11 TCGA-FP-A9TM-01 8 105361033 105361033 G T DCSTAMP Missense_Mutation p.V85F 0.17 tolerated(1) benign(0) TCGA-FP-A9TM-01 8 145057192 145057192 G A PARP10 Missense_Mutation p.R822C 0.08 tolerated(0.07) benign(0.001) TCGA-FP-A9TM-01 8 16850494 16850494 G A FGF20 3'UTR 0.16 TCGA-FP-A9TM-01 8 22874842 22874842 C T RHOBTB2 Missense_Mutation p.R704W 0.15 deleterious(0.02) possibly_damaging(0.696) TCGA-FP-A9TM-01 8 67955459 67955460 AG - COPS5 3'UTR 0.19 TCGA-FP-A9TM-01 8 72965069 72965069 T G RP11-383H13.1 3'UTR 0.22 TCGA-FP-A9TM-01 8 72968012 72968012 C T TRPA1 Missense_Mutation p.G425S 0.09 tolerated(0.1) benign(0.049) TCGA-FP-A9TM-01 8 92998451 92998451 G A RUNX1T1 Missense_Mutation p.R405W 0.10 deleterious(0.02) benign(0.117) TCGA-FP-A9TM-01 9 111624939 111624939 C T ACTL7A Missense_Mutation p.R113C 0.25 deleterious(0.02) probably_damaging(0.979) TCGA-FP-A9TM-01 9 127495614 127495614 C T NR6A1 Missense_Mutation p.E39K 0.10 deleterious_low_confidence(0.04) benign(0.005) TCGA-FP-A9TM-01 9 140508890 140508890 C T ARRDC1 Missense_Mutation p.P253L 0.09 tolerated(0.07) benign(0.403) TCGA-FP-A9TM-01 9 140648711 140648711 G A EHMT1 Missense_Mutation p.R446Q 0.21 deleterious(0.03) probably_damaging(0.996) TCGA-FP-A9TM-01 9 32631119 32631119 G A TAF1L Nonsense_Mutation p.Q1487* 0.30 TCGA-FP-A9TM-01 9 33301348 33301348 G T NFX1 Missense_Mutation p.C374F 0.17 deleterious(0) probably_damaging(0.918) TCGA-FP-A9TM-01 X 102632562 102632562 G A NGFRAP1 Missense_Mutation p.R48Q 0.19 tolerated(0.09) benign(0.001) TCGA-FP-A9TM-01 X 107413859 107413859 G A COL4A6 Missense_Mutation p.P1159L 0.18 probably_damaging(0.965) TCGA-FP-A9TM-01 X 134856851 134856851 T C CT45A1 3'UTR 0.03 TCGA-FP-A9TM-01 X 153941631 153941631 G C GAB3 Silent p.T149T 0.42 TCGA-FP-A9TM-01 X 34961580 34961580 G A FAM47B Missense_Mutation p.R211H 0.23 tolerated(0.43) benign(0.001) TCGA-FP-A9TM-01 X 65474920 65474920 C T HEPH Silent p.G923G 0.19 TCGA-FP-A9TM-01 X 83128290 83128290 T C CYLC1 Missense_Mutation p.S192P 0.30 tolerated(0.07) possibly_damaging(0.504) TCGA-HF-7131-01 10 103560146 103560146 C G MGEA5 Missense_Mutation p.D350H 0.18 tolerated(0.08) benign(0.054) TCGA-HF-7131-01 10 112343632 112343632 G C SMC3 Missense_Mutation p.E335Q 0.20 tolerated(0.44) benign(0.179) TCGA-HF-7131-01 10 17369099 17369099 A T ST8SIA6 Nonsense_Mutation p.Y183* 0.23 TCGA-HF-7131-01 10 28225713 28225713 A G ARMC4 Silent p.L732L 0.25 TCGA-HF-7131-01 10 43971212 43971212 A G ZNF487 5'UTR 0.21 TCGA-HF-7131-01 10 50684291 50684291 T G ERCC6 Missense_Mutation p.E784D 0.23 tolerated(0.14) benign(0.1) TCGA-HF-7131-01 10 74644061 74644061 T C MCU Missense_Mutation p.L300S 0.18 deleterious(0) possibly_damaging(0.897) TCGA-HF-7131-01 11 101375497 101375497 C T TRPC6 Missense_Mutation p.R68Q 0.30 deleterious_low_confidence(0.05) benign(0.015) TCGA-HF-7131-01 11 128786562 128786562 A G KCNJ5 Missense_Mutation p.E399G 0.29 tolerated(0.18) benign(0) TCGA-HF-7131-01 11 17134164 17134164 A G PIK3C2A Missense_Mutation p.V1124A 0.28 tolerated(0.26) benign(0.289) TCGA-HF-7131-01 11 209576 209576 C T RIC8A Missense_Mutation p.S101F 0.19 deleterious(0.02) possibly_damaging(0.601) TCGA-HF-7131-01 11 33589720 33589720 C A KIAA1549L Missense_Mutation p.Q1096K 0.15 deleterious(0.03) probably_damaging(0.996) TCGA-HF-7131-01 11 4150363 4150363 C T RRM1 Silent p.L584L 0.30 TCGA-HF-7131-01 11 66134945 66134945 G C SLC29A2 Silent p.L241L 0.33 TCGA-HF-7131-01 11 66249853 66249853 C A DPP3 Missense_Mutation p.A61D 0.09 tolerated(0.21) benign(0.005) TCGA-HF-7131-01 11 71191857 71191857 C G NADSYN1 Missense_Mutation p.H310Q 0.09 tolerated(0.56) benign(0.002) TCGA-HF-7131-01 11 92087259 92087259 C G FAT3 Missense_Mutation p.L661V 0.23 benign(0.04) TCGA-HF-7131-01 11 92569850 92569850 A C FAT3 Missense_Mutation p.K3402T 0.22 probably_damaging(0.992) TCGA-HF-7131-01 12 124163753 124163753 C T TCTN2 Missense_Mutation p.P161S 0.22 deleterious(0) possibly_damaging(0.883) TCGA-HF-7131-01 12 130926490 130926490 C A RIMBP2 Silent p.V452V 0.26 TCGA-HF-7131-01 12 25263151 25263151 A C CASC1 Silent p.A601A 0.39 TCGA-HF-7131-01 12 56572211 56572211 G A SMARCC2 Silent p.Y429Y 0.33 TCGA-HF-7131-01 12 6030460 6030460 C T ANO2 Missense_Mutation p.D90N 0.36 deleterious(0) possibly_damaging(0.779) TCGA-HF-7131-01 12 66704241 66704241 G A HELB Silent p.Q511Q 0.23 TCGA-HF-7131-01 13 37011820 37011820 G A CCNA1 Missense_Mutation p.G118R 0.35 tolerated(0.11) benign(0.051) TCGA-HF-7131-01 14 102800960 102800960 G A ZNF839 Missense_Mutation p.V496M 0.12 tolerated(0.07) possibly_damaging(0.803) TCGA-HF-7131-01 14 21052221 21052221 T C RNASE11 Missense_Mutation p.K138R 0.32 tolerated(0.13) possibly_damaging(0.864) TCGA-HF-7131-01 14 69521482 69521482 C G DCAF5 Missense_Mutation p.E641Q 0.30 deleterious_low_confidence(0) benign(0.151) TCGA-HF-7131-01 14 72152218 72152218 C G SIPA1L1 Missense_Mutation p.P1082A 0.30 tolerated(0.44) benign(0.197) TCGA-HF-7131-01 15 40659610 40659610 C T DISP2 Missense_Mutation p.L433F 0.35 deleterious(0) probably_damaging(1) TCGA-HF-7131-01 15 40675072 40675072 T A KNSTRN Silent p.V12V 0.44 TCGA-HF-7131-01 15 54586249 54586249 C G UNC13C Silent p.V1325V 0.29 TCGA-HF-7131-01 15 54586259 54586259 T C UNC13C Silent p.L1329L 0.28 TCGA-HF-7131-01 16 2012182 2012182 G C RPS2 Missense_Mutation p.Q267E 0.17 tolerated(0.09) benign(0.015) TCGA-HF-7131-01 16 2158940 2158940 C T PKD1 Silent p.S2076S 0.33 TCGA-HF-7131-01 16 55519555 55519555 G A MMP2 Missense_Mutation p.C233Y 0.19 deleterious(0) probably_damaging(0.999) TCGA-HF-7131-01 17 11784567 11784567 A C DNAH9 Missense_Mutation p.K3548T 0.30 benign(0.027) TCGA-HF-7131-01 17 37331436 37331436 C T CACNB1 3'UTR 0.36 TCGA-HF-7131-01 17 41601117 41601117 C G DHX8 Missense_Mutation p.L1189V 0.24 tolerated(0.12) possibly_damaging(0.566) TCGA-HF-7131-01 17 6927900 6927900 G A BCL6B Nonsense_Mutation p.W194* 0.45 TCGA-HF-7131-01 17 7578547 7578547 G - TP53 Frame_Shift_Del p.P128Lfs*42 0.30 TCGA-HF-7131-01 18 31325297 31325297 A C ASXL3 Missense_Mutation p.K1829Q 0.30 probably_damaging(0.999) TCGA-HF-7131-01 19 14910261 14910261 A C OR7C1 Missense_Mutation p.S230A 0.24 deleterious_low_confidence(0.02) benign(0.06) TCGA-HF-7131-01 19 1507368 1507368 C G ADAMTSL5 Missense_Mutation p.G242A 0.39 deleterious(0.01) probably_damaging(0.994) TCGA-HF-7131-01 19 17654224 17654224 C T FAM129C Silent p.V507V 0.24 TCGA-HF-7131-01 19 22941315 22941315 A C ZNF99 Missense_Mutation p.S466A 0.25 tolerated(0.07) probably_damaging(0.995) TCGA-HF-7131-01 19 22951138 22951138 C T ZNF99 Missense_Mutation p.M65I 0.11 tolerated(0.2) possibly_damaging(0.454) TCGA-HF-7131-01 19 3941137 3941137 A C NMRK2 Missense_Mutation p.K155T 0.46 deleterious(0) probably_damaging(0.97) TCGA-HF-7131-01 19 41594548 41594548 C T CYP2A13 Missense_Mutation p.L58F 0.22 tolerated(0.36) benign(0.292) TCGA-HF-7131-01 19 50195541 50195541 G A CPT1C Missense_Mutation p.R11Q 0.27 tolerated(1) benign(0.017) TCGA-HF-7131-01 19 54678010 54678010 G A MBOAT7 Silent p.L383L 0.26 TCGA-HF-7131-01 19 54783279 54783279 C T LILRB2 Silent p.S193S 0.33 TCGA-HF-7131-01 19 55494426 55494426 G T NLRP2 Missense_Mutation p.A454S 0.33 deleterious(0) probably_damaging(0.998) TCGA-HF-7131-01 19 56466706 56466706 G A NLRP8 Missense_Mutation p.V428I 0.23 tolerated(0.28) benign(0.073) TCGA-HF-7131-01 19 57640967 57640968 TT - USP29 Frame_Shift_Del p.F309Cfs*2 0.19 TCGA-HF-7131-01 19 9087815 9087815 T G MUC16 Missense_Mutation p.S1334R 0.25 unknown(0) TCGA-HF-7131-01 1 148016431 148016431 C T NBPF14 Missense_Mutation p.D277N 0.37 tolerated(0.11) probably_damaging(0.996) TCGA-HF-7131-01 1 150938959 150938959 G A CERS2 Missense_Mutation p.T332I 0.15 tolerated(0.44) benign(0.164) TCGA-HF-7131-01 1 152883950 152883950 G T IVL Silent p.L559L 0.32 TCGA-HF-7131-01 1 158615329 158615329 C A SPTA1 Missense_Mutation p.A1318S 0.38 deleterious(0) possibly_damaging(0.795) TCGA-HF-7131-01 1 161495454 161495454 G A HSPA6 Missense_Mutation p.V336I 0.10 tolerated_low_confidence(1) benign(0.002) TCGA-HF-7131-01 1 16632360 16632360 A C FBXO42 Missense_Mutation p.I102S 0.13 deleterious(0.04) probably_damaging(0.914) TCGA-HF-7131-01 1 167817653 167817653 G A ADCY10 Missense_Mutation p.H795Y 0.14 tolerated(0.14) benign(0.001) TCGA-HF-7131-01 1 170695386 170695386 A G PRRX1 Missense_Mutation p.K148R 0.43 deleterious(0) probably_damaging(0.987) TCGA-HF-7131-01 1 17292551 17292551 G A CROCC Missense_Mutation p.E1545K 0.14 possibly_damaging(0.486) TCGA-HF-7131-01 1 214170481 214170481 A G PROX1 Silent p.R201R 0.10 TCGA-HF-7131-01 1 245861560 245861560 G A KIF26B Missense_Mutation p.E1993K 0.29 deleterious(0.02) unknown(0) TCGA-HF-7131-01 1 27755293 27755293 G A WASF2 Silent p.V36V 0.16 TCGA-HF-7131-01 1 32694120 32694126 TGTTAAG - EIF3I Frame_Shift_Del p.N183Kfs*16 0.13 TCGA-HF-7131-01 1 62516710 62516710 G T INADL Nonsense_Mutation p.E1369* 0.20 TCGA-HF-7131-01 20 19981634 19981634 C T RIN2 3'UTR 0.23 TCGA-HF-7131-01 20 2591146 2591146 C T TMC2 Missense_Mutation p.R499C 0.32 deleterious(0) probably_damaging(0.995) TCGA-HF-7131-01 20 32247529 32247529 G A NECAB3 Missense_Mutation p.S218L 0.38 tolerated(0.62) benign(0.008) TCGA-HF-7131-01 20 34143801 34143801 C G ERGIC3 Intron 0.21 TCGA-HF-7131-01 20 57876686 57876686 C A EDN3 Missense_Mutation p.H92N 0.04 deleterious(0.03) benign(0.247) TCGA-HF-7131-01 20 62187743 62187743 C T C20orf195 Missense_Mutation p.R243C 0.23 tolerated(0.15) probably_damaging(0.958) TCGA-HF-7131-01 21 32639245 32639245 C A TIAM1 Missense_Mutation p.G15V 0.22 deleterious_low_confidence(0) possibly_damaging(0.901) TCGA-HF-7131-01 21 38462540 38462540 C A TTC3 Nonsense_Mutation p.S145* 0.21 TCGA-HF-7131-01 2 179443761 179443761 C A TTN Missense_Mutation p.A22666S 0.26 TCGA-HF-7131-01 2 185800768 185800768 T G ZNF804A Silent p.S215S 0.53 TCGA-HF-7131-01 2 219537513 219537513 C T STK36 5'UTR 0.21 TCGA-HF-7131-01 2 219537515 219537515 C T STK36 5'UTR 0.23 TCGA-HF-7131-01 3 107925507 107925507 G A IFT57 Missense_Mutation p.L208F 0.28 deleterious(0.05) possibly_damaging(0.464) TCGA-HF-7131-01 3 125725937 125725937 G C SLC41A3 Intron 0.27 TCGA-HF-7131-01 3 142178073 142178073 A G ATR Missense_Mutation p.S2449P 0.21 deleterious(0.01) probably_damaging(0.979) TCGA-HF-7131-01 4 151504538 151504538 G A MAB21L2 Silent p.A119A 0.13 TCGA-HF-7131-01 4 55984781 55984781 G C KDR Silent p.V116V 0.43 TCGA-HF-7131-01 4 82013550 82013550 A T PRKG2 Nonsense_Mutation p.L728* 0.33 TCGA-HF-7131-01 4 90874420 90874420 G A MMRN1 Missense_Mutation p.E1180K 0.37 deleterious(0.03) possibly_damaging(0.874) TCGA-HF-7131-01 4 95129681 95129681 G C SMARCAD1 Missense_Mutation p.E46Q 0.33 tolerated_low_confidence(0.47) benign(0.201) TCGA-HF-7131-01 5 140573400 140573400 C T PCDHB10 Silent p.D425D 0.21 TCGA-HF-7131-01 5 79974821 79974821 C T MSH3 Missense_Mutation p.R417W 0.11 deleterious(0) probably_damaging(0.999) TCGA-HF-7131-01 6 131940974 131940974 G T MED23 Silent p.S220S 0.13 TCGA-HF-7131-01 6 149893482 149893482 T C GINM1 Splice_Site p.X60_splice 0.31 TCGA-HF-7131-01 6 27425141 27425141 T C ZNF184 Silent p.E41E 0.27 TCGA-HF-7131-01 6 31930557 31930557 C T SKIV2L Silent p.H426H 0.30 TCGA-HF-7131-01 6 42974807 42974807 G A PPP2R5D Missense_Mutation p.D161N 0.33 tolerated(0.36) benign(0.004) TCGA-HF-7131-01 6 49989635 49989635 A C DEFB110 Missense_Mutation p.L5R 0.19 deleterious(0) probably_damaging(0.979) TCGA-HF-7131-01 6 97063607 97063607 T G FHL5 Missense_Mutation p.F272V 0.38 deleterious(0.04) benign(0.243) TCGA-HF-7131-01 7 140453155 140453155 C T BRAF Missense_Mutation p.D594N 0.10 deleterious(0) possibly_damaging(0.803) TCGA-HF-7131-01 8 113418893 113418893 A G CSMD3 Missense_Mutation p.I1890T 0.07 deleterious(0.03) benign(0.145) TCGA-HF-7131-01 8 120940688 120940688 C T DEPTOR Silent p.L57L 0.30 TCGA-HF-7131-01 8 2027679 2027679 C G MYOM2 Missense_Mutation p.Q501E 0.24 tolerated(0.99) benign(0.003) TCGA-HF-7131-01 8 30694922 30694922 C A TEX15 Nonsense_Mutation p.E2577* 0.27 TCGA-HF-7131-01 8 35402022 35402022 C A UNC5D Intron 0.23 TCGA-HF-7131-01 8 55541287 55541287 C T RP1 Silent p.G1615G 0.21 TCGA-HF-7131-01 9 131456978 131456978 T A SET 3'UTR 0.44 TCGA-HF-7131-01 9 136550315 136550315 C G SARDH Silent p.L721L 0.17 TCGA-HF-7131-01 9 17795797 17795797 T C SH3GL2 3'UTR 0.18 TCGA-HF-7131-01 9 27948704 27948704 T C LINGO2 3'UTR 0.19 TCGA-HF-7131-01 9 33113578 33113578 G T B4GALT1 Missense_Mutation p.D357E 0.15 tolerated(0.15) benign(0.002) TCGA-HF-7131-01 9 35906423 35906423 G A HRCT1 Missense_Mutation p.A47T 0.20 deleterious_low_confidence(0.04) possibly_damaging(0.556) TCGA-HF-7131-01 9 463546 463546 G A DOCK8 Missense_Mutation p.R2033H 0.29 tolerated(0.21) benign(0.012) TCGA-HF-7131-01 9 75309605 75309605 A G TMC1 Missense_Mutation p.R71G 0.10 tolerated(0.19) possibly_damaging(0.587) TCGA-HF-7131-01 9 85964645 85964645 C T FRMD3 Missense_Mutation p.R108K 0.48 deleterious(0) probably_damaging(0.947) TCGA-HF-7131-01 X 56592015 56592015 C T UBQLN2 Missense_Mutation p.A570V 0.52 tolerated(0.42) unknown(0) TCGA-HF-7131-01 X 5811357 5811357 T A NLGN4X Missense_Mutation p.K651M 0.40 tolerated(0.1) benign(0.188) TCGA-HF-7131-01 X 99661892 99661892 C T PCDH19 Silent p.L568L 0.26 TCGA-HF-7132-01 10 101292889 101292889 A G NKX2-3 Translation_Start_Site p.M1? 0.11 deleterious(0.01) benign(0.354) TCGA-HF-7132-01 10 101643927 101643927 G T DNMBP Missense_Mutation p.L1280I 0.10 deleterious(0.02) possibly_damaging(0.696) TCGA-HF-7132-01 10 102055890 102055890 C T PKD2L1 Missense_Mutation p.A449T 0.05 deleterious(0) probably_damaging(0.997) TCGA-HF-7132-01 10 103899081 103899081 G A PPRC1 Silent p.P272P 0.11 TCGA-HF-7132-01 10 104128502 104128502 C T GBF1 Silent p.C961C 0.23 TCGA-HF-7132-01 10 104173625 104173625 T C PSD Missense_Mutation p.E485G 0.23 deleterious(0.05) benign(0.157) TCGA-HF-7132-01 10 104176203 104176203 C - PSD Frame_Shift_Del p.G198Afs*19 0.20 TCGA-HF-7132-01 10 113920452 113920453 - A GPAM Frame_Shift_Ins p.I557Yfs*48 0.15 TCGA-HF-7132-01 10 113928224 113928224 C T GPAM Missense_Mutation p.R318H 0.23 deleterious(0.01) probably_damaging(1) TCGA-HF-7132-01 10 115489357 115489357 T - CASP7 3'UTR 0.26 TCGA-HF-7132-01 10 115804508 115804508 C T ADRB1 Missense_Mutation p.A206V 0.18 deleterious(0) possibly_damaging(0.867) TCGA-HF-7132-01 10 120489879 120489879 C T CACUL1 Nonsense_Mutation p.W137* 0.14 TCGA-HF-7132-01 10 124746902 124746902 G A PSTK Silent p.A310A 0.23 TCGA-HF-7132-01 10 125769742 125769742 G A CHST15 Missense_Mutation p.R537W 0.22 tolerated(0.06) benign(0.003) TCGA-HF-7132-01 10 126694223 126694223 G A CTBP2 Intron 0.10 TCGA-HF-7132-01 10 129868017 129868017 G A PTPRE Missense_Mutation p.A357T 0.11 tolerated(0.59) benign(0.006) TCGA-HF-7132-01 10 129907238 129907238 G A MKI67 Nonsense_Mutation p.Q956* 0.22 TCGA-HF-7132-01 10 134591262 134591262 G A INPP5A Silent p.P355P 0.16 TCGA-HF-7132-01 10 135193657 135193657 C T PAOX Silent p.S112S 0.44 TCGA-HF-7132-01 10 15255359 15255359 C A FAM171A1 Missense_Mutation p.G743V 0.20 deleterious(0) probably_damaging(1) TCGA-HF-7132-01 10 21962783 21962785 CTC - MLLT10 In_Frame_Del p.P520del 0.18 TCGA-HF-7132-01 10 24909067 24909067 A T ARHGAP21 Missense_Mutation p.I586N 0.20 tolerated(0.36) benign(0.056) TCGA-HF-7132-01 10 27389241 27389241 A - ANKRD26 Frame_Shift_Del p.F5Lfs*69 0.13 TCGA-HF-7132-01 10 27536539 27536539 G A RP11-85G18.6 Intron 0.09 TCGA-HF-7132-01 10 28905168 28905168 A G WAC Silent p.T541T 0.23 TCGA-HF-7132-01 10 298288 298288 T C ZMYND11 Missense_Mutation p.C563R 0.06 deleterious(0) possibly_damaging(0.775) TCGA-HF-7132-01 10 30316027 30316027 G A KIAA1462 Missense_Mutation p.A1017V 0.17 tolerated(0.34) benign(0.036) TCGA-HF-7132-01 10 45496132 45496132 T C C10orf25 Missense_Mutation p.Y59C 0.14 deleterious_low_confidence(0) possibly_damaging(0.878) TCGA-HF-7132-01 10 46248063 46248063 C A FAM21C Missense_Mutation p.P344H 0.13 deleterious(0) probably_damaging(1) TCGA-HF-7132-01 10 48388083 48388083 G A RBP3 Missense_Mutation p.A932V 0.20 tolerated(0.28) possibly_damaging(0.483) TCGA-HF-7132-01 10 48389980 48389980 C T RBP3 Missense_Mutation p.G300R 0.48 deleterious(0.03) probably_damaging(1) TCGA-HF-7132-01 10 50945994 50945994 G A OGDHL Missense_Mutation p.P839L 0.20 deleterious(0) probably_damaging(1) TCGA-HF-7132-01 10 51465266 51465266 G A AGAP7 Missense_Mutation p.T397M 0.17 deleterious(0.05) possibly_damaging(0.495) TCGA-HF-7132-01 10 52834317 52834317 C T PRKG1 5'UTR 0.19 TCGA-HF-7132-01 10 5443015 5443015 G A TUBAL3 Silent p.G13G 0.05 TCGA-HF-7132-01 10 61823946 61823946 T - ANK3 Frame_Shift_Del p.K4140Nfs*15 0.14 TCGA-HF-7132-01 10 64159513 64159513 A - ZNF365 Intron 0.33 TCGA-HF-7132-01 10 69647248 69647248 C A SIRT1 Silent p.A168A 0.16 TCGA-HF-7132-01 10 69692445 69692445 C T HERC4 Missense_Mutation p.C924Y 0.12 deleterious(0) probably_damaging(0.999) TCGA-HF-7132-01 10 70513778 70513779 - A CCAR1 Frame_Shift_Ins p.N432Kfs*6 0.11 TCGA-HF-7132-01 10 70645650 70645650 G A STOX1 Missense_Mutation p.V700I 0.21 tolerated(0.35) benign(0.009) TCGA-HF-7132-01 10 73405682 73405682 G A CDH23 Missense_Mutation p.R4H 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-HF-7132-01 10 75541891 75541891 G - CHCHD1 Frame_Shift_Del p.V20Cfs*2 0.19 TCGA-HF-7132-01 10 7820854 7820854 T - KIN Frame_Shift_Del p.T169Lfs*9 0.09 TCGA-HF-7132-01 10 79576336 79576336 G A DLG5 Missense_Mutation p.A1333V 0.10 tolerated(0.86) benign(0.002) TCGA-HF-7132-01 10 79628874 79628874 C T AL391421.1 3'UTR 0.23 TCGA-HF-7132-01 10 83635280 83635280 C T NRG3 Missense_Mutation p.R62W 0.18 deleterious(0) probably_damaging(0.988) TCGA-HF-7132-01 10 87484278 87484278 G A GRID1 Silent p.F563F 0.20 TCGA-HF-7132-01 10 88428502 88428502 G - LDB3 Frame_Shift_Del p.G20Afs*41 0.08 TCGA-HF-7132-01 10 88705369 88705369 G A MMRN2 Missense_Mutation p.S81L 0.21 deleterious(0) probably_damaging(1) TCGA-HF-7132-01 10 88985930 88985930 G A NUTM2A Missense_Mutation p.V115M 0.29 tolerated(0.15) benign(0.392) TCGA-HF-7132-01 10 90034662 90034662 A G RNLS 3'UTR 0.20 TCGA-HF-7132-01 10 90428385 90428385 G A LIPF Silent p.P108P 0.17 TCGA-HF-7132-01 10 93242721 93242721 C T HECTD2 Intron 0.15 TCGA-HF-7132-01 10 93784688 93784688 G A BTAF1 Missense_Mutation p.S1680N 0.18 deleterious(0) possibly_damaging(0.786) TCGA-HF-7132-01 10 94834191 94834191 C T CYP26A1 Missense_Mutation p.R106W 0.23 deleterious(0.01) probably_damaging(0.989) TCGA-HF-7132-01 10 96829175 96829177 TTA - CYP2C8 5'UTR 0.21 TCGA-HF-7132-01 10 97078077 97078078 - A SORBS1 Frame_Shift_Ins p.G1271Wfs*59 0.15 TCGA-HF-7132-01 10 98803215 98803215 G A SLIT1 Missense_Mutation p.R637C 0.18 deleterious(0.01) probably_damaging(0.959) TCGA-HF-7132-01 10 99130743 99130743 G A RRP12 Silent p.H813H 0.15 TCGA-HF-7132-01 11 102195592 102195592 A T BIRC3 Missense_Mutation p.T118S 0.18 tolerated(0.76) benign(0.004) TCGA-HF-7132-01 11 10800334 10800334 C T CTR9 Silent p.S1068S 0.27 TCGA-HF-7132-01 11 110030104 110030104 C T ZC3H12C Missense_Mutation p.S346L 0.16 deleterious(0) probably_damaging(0.999) TCGA-HF-7132-01 11 1101020 1101020 C T MUC2 Silent p.C2473C 0.28 TCGA-HF-7132-01 11 111385566 111385566 C - C11orf88 Frame_Shift_Del p.P21Rfs*79 0.09 TCGA-HF-7132-01 11 111631752 111631752 A G PPP2R1B Silent p.T110T 0.17 TCGA-HF-7132-01 11 113215077 113215077 C T TTC12 Missense_Mutation p.R357W 0.22 deleterious(0) benign(0.009) TCGA-HF-7132-01 11 113934110 113934110 G A ZBTB16 Missense_Mutation p.A30T 0.19 tolerated(0.22) benign(0.11) TCGA-HF-7132-01 11 114113008 114113008 C T ZBTB16 Missense_Mutation p.R525C 0.23 deleterious(0) probably_damaging(0.978) TCGA-HF-7132-01 11 117063305 117063305 G A SIDT2 Missense_Mutation p.R666H 0.23 deleterious(0.04) probably_damaging(0.956) TCGA-HF-7132-01 11 117303115 117303115 T C DSCAML1 Missense_Mutation p.Q1771R 0.12 deleterious(0.01) probably_damaging(0.964) TCGA-HF-7132-01 11 117403212 117403212 G A DSCAML1 Silent p.H239H 0.15 TCGA-HF-7132-01 11 118263589 118263589 C T UBE4A Missense_Mutation p.T1025I 0.22 deleterious(0.01) probably_damaging(0.956) TCGA-HF-7132-01 11 118361992 118361992 G A KMT2A Missense_Mutation p.R1593H 0.10 probably_damaging(0.999) TCGA-HF-7132-01 11 118398293 118398293 C T TTC36 Silent p.L28L 0.16 TCGA-HF-7132-01 11 118625487 118625487 G A DDX6 Silent p.S462S 0.13 TCGA-HF-7132-01 11 118850217 118850218 - A FOXR1 Frame_Shift_Ins p.R152Kfs*81 0.09 TCGA-HF-7132-01 11 118963986 118963986 C T HMBS Missense_Mutation p.A360V 0.15 tolerated_low_confidence(0.08) benign(0.048) TCGA-HF-7132-01 11 118967888 118967888 A G DPAGT1 Silent p.H375H 0.19 TCGA-HF-7132-01 11 119052858 119052858 G A NLRX1 Missense_Mutation p.A804T 0.21 tolerated(0.08) benign(0.006) TCGA-HF-7132-01 11 121023678 121023678 C T TECTA Silent p.C1398C 0.21 TCGA-HF-7132-01 11 12316004 12316004 C A MICALCL Silent p.A342A 0.19 TCGA-HF-7132-01 11 124971177 124971177 A C TMEM218 Missense_Mutation p.F45V 0.17 tolerated(0.15) benign(0.079) TCGA-HF-7132-01 11 125550714 125550714 A C ACRV1 5'UTR 0.20 TCGA-HF-7132-01 11 126137546 126137546 C T SRPR Missense_Mutation p.R88Q 0.13 tolerated(0.56) benign(0.059) TCGA-HF-7132-01 11 1272662 1272662 C T MUC5B Missense_Mutation p.P4851L 0.09 unknown(0) TCGA-HF-7132-01 11 1276035 1276035 G A MUC5B Missense_Mutation p.V5197I 0.18 unknown(0) TCGA-HF-7132-01 11 128781757 128781757 G A KCNJ5 Missense_Mutation p.A197T 0.08 tolerated(0.09) probably_damaging(1) TCGA-HF-7132-01 11 17482097 17482097 G A ABCC8 Missense_Mutation p.P317S 0.14 deleterious(0) probably_damaging(0.994) TCGA-HF-7132-01 11 18741301 18741301 T G IGSF22 Silent p.R220R 0.21 TCGA-HF-7132-01 11 18764950 18764950 G A PTPN5 Silent p.S106S 0.12 TCGA-HF-7132-01 11 21581797 21581797 G A NELL1 Missense_Mutation p.A617T 0.10 tolerated(0.1) benign(0.062) TCGA-HF-7132-01 11 22276925 22276925 T - ANO5 Frame_Shift_Del p.L398Wfs*29 0.12 TCGA-HF-7132-01 11 22363180 22363180 T C SLC17A6 Missense_Mutation p.F65L 0.18 tolerated(0.66) benign(0.006) TCGA-HF-7132-01 11 239045 239045 C T PSMD13 Intron 0.20 TCGA-HF-7132-01 11 26681924 26681924 C T ANO3 Missense_Mutation p.A960V 0.18 tolerated(0.51) probably_damaging(0.998) TCGA-HF-7132-01 11 27520240 27520240 G A LIN7C Missense_Mutation p.R184C 0.18 deleterious(0.04) probably_damaging(0.997) TCGA-HF-7132-01 11 320862 320862 G A IFITM3 5'UTR 0.17 TCGA-HF-7132-01 11 32955470 32955470 C T QSER1 Missense_Mutation p.P760L 0.15 deleterious(0) benign(0.043) TCGA-HF-7132-01 11 3832493 3832493 T C PGAP2 Missense_Mutation p.Y2H 0.11 deleterious_low_confidence(0.01) benign(0.187) TCGA-HF-7132-01 11 3848830 3848830 G A RHOG Missense_Mutation p.T180M 0.18 deleterious(0.05) benign(0.006) TCGA-HF-7132-01 11 44956502 44956502 C T TP53I11 Missense_Mutation p.R168H 0.14 deleterious(0.03) possibly_damaging(0.636) TCGA-HF-7132-01 11 45671602 45671602 G A CHST1 Missense_Mutation p.P291L 0.22 tolerated(0.33) benign(0.052) TCGA-HF-7132-01 11 46884240 46884241 - T LRP4 Frame_Shift_Ins p.S1768Ifs*12 0.19 TCGA-HF-7132-01 11 47282097 47282097 C T NR1H3 Missense_Mutation p.R124C 0.15 deleterious(0) probably_damaging(1) TCGA-HF-7132-01 11 48145177 48145177 T C PTPRJ Missense_Mutation p.V210A 0.20 deleterious(0.01) benign(0.259) TCGA-HF-7132-01 11 48238920 48238920 T C OR4B1 Missense_Mutation p.C187R 0.11 deleterious(0) probably_damaging(0.981) TCGA-HF-7132-01 11 4825181 4825181 C T OR52R1 Missense_Mutation p.V144M 0.19 deleterious(0.02) possibly_damaging(0.647) TCGA-HF-7132-01 11 4944754 4944754 G A OR51G1 Silent p.R272R 0.15 TCGA-HF-7132-01 11 49974622 49974622 C T OR4C13 Silent p.C216C 0.10 TCGA-HF-7132-01 11 5364477 5364477 G A OR51B5 Missense_Mutation p.A93V 0.13 tolerated(0.19) benign(0.001) TCGA-HF-7132-01 11 55322287 55322287 A G OR4C15 Missense_Mutation p.T169A 0.12 tolerated_low_confidence(0.07) benign(0.43) TCGA-HF-7132-01 11 55433482 55433482 A G OR4C6 Silent p.L280L 0.18 TCGA-HF-7132-01 11 56020522 56020522 G T OR5T3 Nonsense_Mutation p.G283* 0.20 TCGA-HF-7132-01 11 561891 561891 A G RASSF7 Missense_Mutation p.I41M 0.10 deleterious(0) probably_damaging(0.999) TCGA-HF-7132-01 11 56237921 56237921 C T OR5M3 Missense_Mutation p.R18H 0.14 tolerated(0.38) benign(0) TCGA-HF-7132-01 11 57466855 57466857 AGA - ZDHHC5 In_Frame_Del p.E651del 0.16 TCGA-HF-7132-01 11 58891822 58891822 G A FAM111B Silent p.T84T 0.09 TCGA-HF-7132-01 11 59481128 59481128 G A OR10V1 Missense_Mutation p.A64V 0.18 tolerated(0.15) possibly_damaging(0.844) TCGA-HF-7132-01 11 60154225 60154225 A - MS4A7 Frame_Shift_Del p.K107Nfs*9 0.12 TCGA-HF-7132-01 11 60637116 60637116 G A ZP1 Missense_Mutation p.R142Q 0.16 tolerated(0.58) benign(0.006) TCGA-HF-7132-01 11 60703936 60703936 C T TMEM132A Missense_Mutation p.R878C 0.24 deleterious(0) probably_damaging(0.993) TCGA-HF-7132-01 11 61071387 61071387 G A DDB1 Missense_Mutation p.R928C 0.12 deleterious(0) probably_damaging(1) TCGA-HF-7132-01 11 61323636 61323636 G A SYT7 Silent p.T25T 0.19 TCGA-HF-7132-01 11 64390423 64390423 G A NRXN2 Silent p.A1325A 0.15 TCGA-HF-7132-01 11 64534506 64534506 G A SF1 Missense_Mutation p.P608L 0.22 deleterious_low_confidence(0.04) unknown(0) TCGA-HF-7132-01 11 64812170 64812170 G T SAC3D1 Missense_Mutation p.G350C 0.24 tolerated_low_confidence(0.09) possibly_damaging(0.707) TCGA-HF-7132-01 11 65320450 65320450 A G LTBP3 Missense_Mutation p.I356T 0.16 deleterious(0) possibly_damaging(0.872) TCGA-HF-7132-01 11 65825861 65825861 C T SF3B2 Silent p.S317S 0.25 TCGA-HF-7132-01 11 66252663 66252663 C T DPP3 Missense_Mutation p.A97V 0.17 deleterious(0.01) benign(0.323) TCGA-HF-7132-01 11 66453406 66453406 C T SPTBN2 Missense_Mutation p.R2370H 0.16 tolerated(0.06) probably_damaging(0.991) TCGA-HF-7132-01 11 66613599 66613599 C T RCE1 3'UTR 0.28 TCGA-HF-7132-01 11 67191666 67191666 G A CARNS1 Missense_Mutation p.R816H 0.14 deleterious(0) probably_damaging(1) TCGA-HF-7132-01 11 67208800 67208800 G A CORO1B Intron 0.14 TCGA-HF-7132-01 11 67430713 67430713 C A ALDH3B2 Missense_Mutation p.M377I 0.26 tolerated(0.09) benign(0.002) TCGA-HF-7132-01 11 68183850 68183850 C T LRP5 Missense_Mutation p.P961L 0.22 tolerated(1) benign(0.005) TCGA-HF-7132-01 11 68201246 68201246 C T LRP5 Missense_Mutation p.R1314C 0.18 deleterious(0.05) possibly_damaging(0.773) TCGA-HF-7132-01 11 68525199 68525199 C A CPT1A Splice_Site p.X746_splice 0.11 TCGA-HF-7132-01 11 68664114 68664114 T C MRPL21 Missense_Mutation p.T89A 0.07 tolerated(0.47) benign(0.003) TCGA-HF-7132-01 11 69631101 69631101 C T FGF3 Missense_Mutation p.R104Q 0.12 deleterious(0.05) possibly_damaging(0.642) TCGA-HF-7132-01 11 71276692 71276692 G T KRTAP5-10 Missense_Mutation p.G20V 0.20 unknown(0) TCGA-HF-7132-01 11 71952170 71952170 G A PHOX2A Silent p.I127I 0.18 TCGA-HF-7132-01 11 73022117 73022117 C T ARHGEF17 Missense_Mutation p.R812C 0.08 tolerated_low_confidence(0.23) benign(0.001) TCGA-HF-7132-01 11 73990445 73990445 C T P4HA3 Missense_Mutation p.R388H 0.18 deleterious(0) probably_damaging(0.993) TCGA-HF-7132-01 11 74057834 74057834 A G PGM2L1 Missense_Mutation p.V327A 0.15 deleterious(0) benign(0.349) TCGA-HF-7132-01 11 74547506 74547506 C T RNF169 Nonsense_Mutation p.R620* 0.25 TCGA-HF-7132-01 11 77775270 77775270 C T THRSP Silent p.L115L 0.11 TCGA-HF-7132-01 11 8478889 8478889 A G STK33 Silent p.N232N 0.13 TCGA-HF-7132-01 11 85623745 85623745 T C CCDC83 Missense_Mutation p.L283P 0.10 tolerated_low_confidence(0.14) benign(0) TCGA-HF-7132-01 11 89075264 89075264 C A NOX4 Missense_Mutation p.A439S 0.19 deleterious(0) probably_damaging(1) TCGA-HF-7132-01 11 92543168 92543168 A G FAT3 Missense_Mutation p.Y3136C 0.15 probably_damaging(0.995) TCGA-HF-7132-01 11 92577840 92577840 G A FAT3 Silent p.T3769T 0.36 TCGA-HF-7132-01 11 92590407 92590407 C A FAT3 Missense_Mutation p.P3798H 0.15 possibly_damaging(0.85) TCGA-HF-7132-01 11 92914014 92914014 C T SLC36A4 Silent p.Q163Q 0.24 TCGA-HF-7132-01 11 94278034 94278034 G C FUT4 Silent p.G245G 0.25 TCGA-HF-7132-01 11 95516407 95516407 A G FAM76B Missense_Mutation p.W129R 0.12 deleterious(0) probably_damaging(1) TCGA-HF-7132-01 12 100453799 100453799 G A UHRF1BP1L Silent p.S524S 0.16 TCGA-HF-7132-01 12 100957095 100957095 A - NR1H4 Frame_Shift_Del p.K431Sfs*21 0.17 TCGA-HF-7132-01 12 102069194 102069194 T C MYBPC1 Silent p.A971A 0.21 TCGA-HF-7132-01 12 10750656 10750656 T G KLRAP1 RNA 0.20 TCGA-HF-7132-01 12 10777340 10777340 C T STYK1 Missense_Mutation p.R279Q 0.15 tolerated(0.43) benign(0.028) TCGA-HF-7132-01 12 108686284 108686284 G A CMKLR1 Silent p.S152S 0.25 TCGA-HF-7132-01 12 109509448 109509448 C T USP30 Missense_Mutation p.S171L 0.17 deleterious(0) possibly_damaging(0.804) TCGA-HF-7132-01 12 110006573 110006573 A G MMAB Splice_Site p.X97_splice 0.23 TCGA-HF-7132-01 12 11183740 11183740 A G TAS2R31 Silent p.N65N 0.04 TCGA-HF-7132-01 12 113314521 113314521 G T RPH3A Missense_Mutation p.A341S 0.09 tolerated(0.44) benign(0.002) TCGA-HF-7132-01 12 113906026 113906026 G A LHX5 Missense_Mutation p.T194M 0.20 deleterious(0.02) probably_damaging(0.952) TCGA-HF-7132-01 12 113909232 113909232 C T LHX5 Silent p.A24A 0.25 TCGA-HF-7132-01 12 114793771 114793771 G A TBX5 Missense_Mutation p.R375W 0.11 deleterious(0) probably_damaging(0.993) TCGA-HF-7132-01 12 117217143 117217143 T C RNFT2 Missense_Mutation p.V291A 0.06 deleterious(0.03) benign(0.053) TCGA-HF-7132-01 12 117387463 117387464 AC - FBXW8 Frame_Shift_Del p.T211Sfs*4 0.10 TCGA-HF-7132-01 12 117962692 117962692 G A KSR2 Silent p.A728A 0.16 TCGA-HF-7132-01 12 120156088 120156088 G A CIT Missense_Mutation p.P1377L 0.16 deleterious(0) benign(0.173) TCGA-HF-7132-01 12 120584908 120584908 C T GCN1L1 Missense_Mutation p.R1632Q 0.15 possibly_damaging(0.866) TCGA-HF-7132-01 12 122361622 122361622 T G WDR66 Missense_Mutation p.F158C 0.16 deleterious_low_confidence(0.04) possibly_damaging(0.525) TCGA-HF-7132-01 12 122667814 122667814 C T LRRC43 Silent p.R41R 0.44 TCGA-HF-7132-01 12 122676097 122676097 G A LRRC43 Missense_Mutation p.A358T 0.15 tolerated(0.32) benign(0.004) TCGA-HF-7132-01 12 123829930 123829930 G A SBNO1 Missense_Mutation p.A142V 0.14 tolerated_low_confidence(0.17) benign(0.021) TCGA-HF-7132-01 12 12672866 12672867 AG - DUSP16 Frame_Shift_Del p.S99Ffs*11 0.15 TCGA-HF-7132-01 12 130647672 130647672 G A FZD10 Missense_Mutation p.R62H 0.20 tolerated(0.1) possibly_damaging(0.873) TCGA-HF-7132-01 12 13140005 13140005 C T HEBP1 Intron 0.22 TCGA-HF-7132-01 12 132281836 132281836 C T SFSWAP Missense_Mutation p.A935V 0.20 deleterious_low_confidence(0.04) unknown(0) TCGA-HF-7132-01 12 133733588 133733589 TT - ZNF10 3'UTR 0.11 TCGA-HF-7132-01 12 13716608 13716608 G A GRIN2B Silent p.G1188G 0.18 TCGA-HF-7132-01 12 13717418 13717418 C T GRIN2B Silent p.P918P 0.16 TCGA-HF-7132-01 12 20885884 20885884 G - SLCO1C1 Frame_Shift_Del p.I412* 0.14 TCGA-HF-7132-01 12 21665287 21665287 C T GOLT1B Silent p.L119L 0.13 TCGA-HF-7132-01 12 21721851 21721851 C T GYS2 Silent p.T257T 0.15 TCGA-HF-7132-01 12 22677508 22677508 C A C2CD5 Nonsense_Mutation p.E167* 0.17 TCGA-HF-7132-01 12 3018723 3018723 C T TULP3 Nonsense_Mutation p.R24* 0.21 TCGA-HF-7132-01 12 3129845 3129845 C T TEAD4 Missense_Mutation p.P210L 0.22 tolerated(0.21) benign(0.001) TCGA-HF-7132-01 12 31820939 31820939 T C METTL20 3'UTR 0.22 TCGA-HF-7132-01 12 42745792 42745792 G A PPHLN1 Missense_Mutation p.D60N 0.14 tolerated(0.12) benign(0.007) TCGA-HF-7132-01 12 46287412 46287412 G T ARID2 Splice_Site p.X1758_splice 0.23 TCGA-HF-7132-01 12 4719362 4719362 A - DYRK4 Frame_Shift_Del p.R355Dfs*12 0.27 TCGA-HF-7132-01 12 48110149 48110149 C T ENDOU Missense_Mutation p.A229T 0.16 tolerated(1) benign(0.002) TCGA-HF-7132-01 12 48376306 48376306 G A COL2A1 Silent p.I760I 0.23 TCGA-HF-7132-01 12 49087737 49087737 A G CCNT1 Silent p.Y420Y 0.14 TCGA-HF-7132-01 12 49373465 49373465 G A WNT1 Missense_Mutation p.A107T 0.14 tolerated(0.74) benign(0.002) TCGA-HF-7132-01 12 49436573 49436573 G A KMT2D Silent p.T1911T 0.19 TCGA-HF-7132-01 12 49445500 49445500 G - KMT2D Frame_Shift_Del p.L656Cfs*274 0.18 TCGA-HF-7132-01 12 49691820 49691820 G T PRPH Missense_Mutation p.E449D 0.20 tolerated(0.06) benign(0.028) TCGA-HF-7132-01 12 49951828 49951828 G A KCNH3 3'UTR 0.27 TCGA-HF-7132-01 12 50190545 50190545 C T NCKAP5L Silent p.A366A 0.14 TCGA-HF-7132-01 12 50355937 50355937 C T AQP5 Missense_Mutation p.A46V 0.11 deleterious(0) possibly_damaging(0.611) TCGA-HF-7132-01 12 50368216 50368216 C - AQP6 Frame_Shift_Del p.P172Rfs*4 0.18 TCGA-HF-7132-01 12 50390908 50390908 C T RACGAP1 Missense_Mutation p.R320H 0.19 deleterious(0.02) benign(0.08) TCGA-HF-7132-01 12 5153795 5153795 A G KCNA5 Missense_Mutation p.N161S 0.20 deleterious(0) probably_damaging(0.994) TCGA-HF-7132-01 12 52913955 52913955 A G KRT5 Silent p.G42G 0.10 TCGA-HF-7132-01 12 53170507 53170507 A C KRT76 Missense_Mutation p.L190R 0.20 deleterious(0) probably_damaging(0.998) TCGA-HF-7132-01 12 53691644 53691644 C T PFDN5 Missense_Mutation p.P73L 0.18 deleterious(0) probably_damaging(0.99) TCGA-HF-7132-01 12 53775576 53775576 C T SP1 Silent p.S47S 0.06 TCGA-HF-7132-01 12 54686543 54686543 G A NFE2 Missense_Mutation p.P246L 0.20 deleterious(0) probably_damaging(0.998) TCGA-HF-7132-01 12 56078944 56078944 C A ITGA7 Missense_Mutation p.W1108C 0.24 deleterious(0) probably_damaging(1) TCGA-HF-7132-01 12 56481659 56481659 G A ERBB3 Missense_Mutation p.A232T 0.21 deleterious(0.04) probably_damaging(1) TCGA-HF-7132-01 12 56487185 56487185 G A ERBB3 Missense_Mutation p.R444Q 0.15 tolerated(0.37) probably_damaging(0.927) TCGA-HF-7132-01 12 56561898 56561898 G C SMARCC2 Missense_Mutation p.I901M 0.22 deleterious(0.04) benign(0.308) TCGA-HF-7132-01 12 56567584 56567584 C G SMARCC2 Missense_Mutation p.A516P 0.05 tolerated(0.32) possibly_damaging(0.665) TCGA-HF-7132-01 12 57111396 57111396 G - NACA Intron 0.10 TCGA-HF-7132-01 12 57397473 57397475 AAG - ZBTB39 In_Frame_Del p.F410del 0.21 TCGA-HF-7132-01 12 57843561 57843561 C T INHBC Missense_Mutation p.A272V 0.16 tolerated(0.21) benign(0.033) TCGA-HF-7132-01 12 58004404 58004404 C T ARHGEF25 Missense_Mutation p.R51C 0.19 tolerated_low_confidence(0.21) benign(0) TCGA-HF-7132-01 12 6344406 6344406 A C CD9 Missense_Mutation p.E120D 0.17 tolerated(0.64) benign(0.012) TCGA-HF-7132-01 12 63544480 63544480 C T AVPR1A Missense_Mutation p.R46H 0.06 deleterious(0) probably_damaging(0.996) TCGA-HF-7132-01 12 6439448 6439448 C T TNFRSF1A Silent p.S251S 0.19 TCGA-HF-7132-01 12 64891772 64891772 G T TBK1 Missense_Mutation p.M697I 0.10 deleterious(0) probably_damaging(0.942) TCGA-HF-7132-01 12 6672481 6672481 C A NOP2 Missense_Mutation p.E329D 0.31 deleterious(0.01) possibly_damaging(0.561) TCGA-HF-7132-01 12 66800084 66800084 G A GRIP1 Missense_Mutation p.R603C 0.16 deleterious(0.01) probably_damaging(0.98) TCGA-HF-7132-01 12 75893593 75893593 T - KRR1 Frame_Shift_Del p.K381Sfs*8 0.26 TCGA-HF-7132-01 12 77440093 77440093 C T E2F7 Missense_Mutation p.R185H 0.22 deleterious(0) probably_damaging(1) TCGA-HF-7132-01 12 78225343 78225343 A G NAV3 Silent p.S34S 0.12 TCGA-HF-7132-01 12 78592446 78592446 C T NAV3 Missense_Mutation p.H2148Y 0.15 deleterious(0.01) possibly_damaging(0.799) TCGA-HF-7132-01 12 7867781 7867781 G A DPPA3 Missense_Mutation p.A29T 0.13 deleterious(0.01) benign(0.444) TCGA-HF-7132-01 12 82147944 82147944 C A PPFIA2 Silent p.G19G 0.12 TCGA-HF-7132-01 12 89917656 89917656 G A GALNT4 Missense_Mutation p.T224I 0.11 deleterious(0.03) probably_damaging(1) TCGA-HF-7132-01 12 8995753 8995753 A G A2ML1 Silent p.L424L 0.18 TCGA-HF-7132-01 12 93170622 93170622 G A EEA1 Missense_Mutation p.R1371W 0.07 deleterious(0) probably_damaging(0.999) TCGA-HF-7132-01 12 94620456 94620456 C T PLXNC1 Silent p.C622C 0.05 TCGA-HF-7132-01 12 95663938 95663939 - T VEZT Frame_Shift_Ins p.L275Sfs*15 0.35 TCGA-HF-7132-01 12 95663939 95663939 C T VEZT Silent p.L275L 0.35 TCGA-HF-7132-01 12 99007790 99007790 T - IKBIP Frame_Shift_Del p.N209Ifs*3 0.22 TCGA-HF-7132-01 13 101714336 101714336 A G NALCN Missense_Mutation p.L1580P 0.27 deleterious(0) probably_damaging(0.984) TCGA-HF-7132-01 13 107209529 107209529 T G ARGLU1 Intron 0.21 TCGA-HF-7132-01 13 111164351 111164351 G T COL4A2 Missense_Mutation p.R1651L 0.14 unknown(0) TCGA-HF-7132-01 13 111287698 111287698 C A CARKD Intron 0.25 TCGA-HF-7132-01 13 113742666 113742666 C T MCF2L Missense_Mutation p.A905V 0.21 tolerated(0.15) benign(0.12) TCGA-HF-7132-01 13 113838692 113838692 C T PCID2 Missense_Mutation p.R272H 0.20 deleterious(0) probably_damaging(0.982) TCGA-HF-7132-01 13 114288216 114288217 - A TFDP1 Frame_Shift_Ins p.N164Kfs*51 0.13 TCGA-HF-7132-01 13 114538550 114538550 G A GAS6 Silent p.P216P 0.14 TCGA-HF-7132-01 13 20346616 20346617 AG - PSPC1 Frame_Shift_Del p.L147Tfs*23 0.09 TCGA-HF-7132-01 13 23905203 23905203 G - SACS Frame_Shift_Del p.P4271Lfs*3 0.18 TCGA-HF-7132-01 13 24233225 24233225 C T TNFRSF19 Missense_Mutation p.T161M 0.14 deleterious(0.01) probably_damaging(0.983) TCGA-HF-7132-01 13 24852931 24852931 A C SPATA13 Intron 0.24 TCGA-HF-7132-01 13 25744119 25744119 G A AMER2 Missense_Mutation p.R547W 0.12 deleterious(0.01) possibly_damaging(0.672) TCGA-HF-7132-01 13 28130443 28130443 A G LNX2 Silent p.G492G 0.14 TCGA-HF-7132-01 13 28897011 28897011 G T FLT1 Missense_Mutation p.L957I 0.06 tolerated(0.2) probably_damaging(0.999) TCGA-HF-7132-01 13 32527044 32527044 G A EEF1DP3 RNA 0.11 TCGA-HF-7132-01 13 32758746 32758746 C T FRY Missense_Mutation p.R1022C 0.18 deleterious(0) probably_damaging(0.999) TCGA-HF-7132-01 13 32912505 32912505 G A BRCA2 Missense_Mutation p.G1338D 0.20 tolerated(0.31) benign(0.043) TCGA-HF-7132-01 13 32914237 32914237 G A BRCA2 Silent p.T1915T 0.24 TCGA-HF-7132-01 13 35517248 35517248 C T NBEA Silent p.N97N 0.16 TCGA-HF-7132-01 13 35733663 35733663 A - NBEA Frame_Shift_Del p.N1121Mfs*9 0.30 TCGA-HF-7132-01 13 36397008 36397008 C - DCLK1 Frame_Shift_Del p.G471Efs*25 0.19 TCGA-HF-7132-01 13 37453576 37453576 C T SMAD9 Missense_Mutation p.R84H 0.12 deleterious(0.03) probably_damaging(0.992) TCGA-HF-7132-01 13 38145526 38145526 A G POSTN Missense_Mutation p.I720T 0.04 deleterious_low_confidence(0) benign(0.097) TCGA-HF-7132-01 13 41328182 41328182 C T MRPS31 Missense_Mutation p.A263T 0.06 tolerated(0.75) benign(0.009) TCGA-HF-7132-01 13 41768407 41768407 A G KBTBD7 5'UTR 0.08 TCGA-HF-7132-01 13 42874607 42874607 A G AKAP11 Silent p.S575S 0.14 TCGA-HF-7132-01 13 46577381 46577381 T - ZC3H13 Frame_Shift_Del p.K279Nfs*8 0.17 TCGA-HF-7132-01 13 61987886 61987886 G A PCDH20 Missense_Mutation p.P116S 0.22 tolerated(0.05) benign(0.168) TCGA-HF-7132-01 13 75866265 75866265 G T TBC1D4 Silent p.T1153T 0.09 TCGA-HF-7132-01 13 75873672 75873672 G A TBC1D4 Missense_Mutation p.L984F 0.16 deleterious(0) probably_damaging(1) TCGA-HF-7132-01 13 78293734 78293734 A G SLAIN1 Missense_Mutation p.R68G 0.16 deleterious(0) unknown(0) TCGA-HF-7132-01 13 79175721 79175721 G A POU4F1 Silent p.A363A 0.21 TCGA-HF-7132-01 13 88328903 88328903 C A SLITRK5 Nonsense_Mutation p.Y420* 0.11 TCGA-HF-7132-01 13 88329623 88329623 G A SLITRK5 Silent p.S660S 0.25 TCGA-HF-7132-01 13 96086249 96086249 C T CLDN10 Silent p.N54N 0.11 TCGA-HF-7132-01 13 98009742 98009742 C - MBNL2 Frame_Shift_Del p.P272Lfs*54 0.09 TCGA-HF-7132-01 13 99459997 99459997 G A DOCK9 Missense_Mutation p.S1825L 0.25 deleterious(0) probably_damaging(0.999) TCGA-HF-7132-01 13 99520200 99520200 A - DOCK9 Frame_Shift_Del p.F1052Lfs*19 0.13 TCGA-HF-7132-01 14 102493518 102493518 C T DYNC1H1 Missense_Mutation p.R2927C 0.16 probably_damaging(0.998) TCGA-HF-7132-01 14 102505519 102505519 C T DYNC1H1 Silent p.T3796T 0.09 TCGA-HF-7132-01 14 103338278 103338278 G A TRAF3 Silent p.A90A 0.24 TCGA-HF-7132-01 14 103470322 103470322 G A CDC42BPB Silent p.N130N 0.15 TCGA-HF-7132-01 14 104508506 104508506 C T TDRD9 Missense_Mutation p.A1319V 0.13 tolerated(0.52) benign(0.011) TCGA-HF-7132-01 14 104570673 104570673 C T ASPG Silent p.G262G 0.27 TCGA-HF-7132-01 14 105174271 105174271 G A INF2 Missense_Mutation p.R556Q 0.23 tolerated(0.1) unknown(0) TCGA-HF-7132-01 14 105407934 105407934 G A AHNAK2 Silent p.H4618H 0.21 TCGA-HF-7132-01 14 105936475 105936475 C T MTA1 Missense_Mutation p.R691C 0.10 deleterious(0) benign(0.432) TCGA-HF-7132-01 14 105945514 105945514 C T CRIP2 Silent p.C227C 0.18 TCGA-HF-7132-01 14 106994226 106994226 T A IGHV3-48 Missense_Mutation p.L14F 0.17 tolerated_low_confidence(0.16) benign(0.032) TCGA-HF-7132-01 14 20841475 20841475 G T TEP1 Silent p.A2256A 0.10 TCGA-HF-7132-01 14 21025123 21025123 G T RNASE9 Missense_Mutation p.P41T 0.21 tolerated(0.48) probably_damaging(0.991) TCGA-HF-7132-01 14 21543656 21543656 C T ARHGEF40 Missense_Mutation p.T539M 0.25 deleterious(0.04) probably_damaging(0.98) TCGA-HF-7132-01 14 21769213 21769213 C T RPGRIP1 Missense_Mutation p.R103C 0.13 deleterious(0.01) possibly_damaging(0.634) TCGA-HF-7132-01 14 21993446 21993446 C - SALL2 Frame_Shift_Del p.G139Afs*2 0.21 TCGA-HF-7132-01 14 24607279 24607279 C T PSME1 Nonsense_Mutation p.Q138* 0.15 TCGA-HF-7132-01 14 24626574 24626574 G A RNF31 Missense_Mutation p.A857T 0.34 tolerated(0.15) probably_damaging(0.911) TCGA-HF-7132-01 14 33291716 33291716 C A AKAP6 Nonsense_Mutation p.S1566* 0.19 TCGA-HF-7132-01 14 35742707 35742707 G A KIAA0391 Missense_Mutation p.D563N 0.13 tolerated(0.23) probably_damaging(0.981) TCGA-HF-7132-01 14 36064949 36064949 T - RALGAPA1 Frame_Shift_Del p.N1861Tfs*6 0.11 TCGA-HF-7132-01 14 50088553 50088553 A G MGAT2 Silent p.P189P 0.16 TCGA-HF-7132-01 14 50146467 50146467 C T POLE2 Missense_Mutation p.C74Y 0.10 deleterious(0.05) probably_damaging(0.998) TCGA-HF-7132-01 14 51226994 51226994 G A NIN Silent p.N660N 0.28 TCGA-HF-7132-01 14 51411117 51411117 G A PYGL Missense_Mutation p.A2V 0.18 tolerated_low_confidence(0.13) benign(0.007) TCGA-HF-7132-01 14 52508901 52508901 G - NID2 Frame_Shift_Del p.L583Sfs*14 0.14 TCGA-HF-7132-01 14 56233151 56233151 G A RP11-813I20.2 Intron 0.25 TCGA-HF-7132-01 14 58954677 58954677 C T KIAA0586 Missense_Mutation p.A1179V 0.10 tolerated(0.29) benign(0.001) TCGA-HF-7132-01 14 59942860 59942860 C T L3HYPDH Missense_Mutation p.A251T 0.20 tolerated(0.45) benign(0.005) TCGA-HF-7132-01 14 59961932 59961932 G A JKAMP Missense_Mutation p.V150I 0.37 tolerated(0.14) probably_damaging(0.998) TCGA-HF-7132-01 14 62547763 62547763 G A SYT16 Missense_Mutation p.G402D 0.18 deleterious(0.01) possibly_damaging(0.653) TCGA-HF-7132-01 14 64467370 64467370 T G SYNE2 Missense_Mutation p.F1191V 0.05 benign(0.003) TCGA-HF-7132-01 14 65251050 65251050 C T SPTB Missense_Mutation p.R1306Q 0.18 tolerated(0.17) benign(0.408) TCGA-HF-7132-01 14 65253729 65253729 C T SPTB Missense_Mutation p.R985Q 0.25 tolerated(0.12) benign(0.009) TCGA-HF-7132-01 14 65392757 65392757 G C CHURC1-FNTB Missense_Mutation p.A70P 0.17 tolerated(0.14) possibly_damaging(0.54) TCGA-HF-7132-01 14 70517819 70517819 C T SLC8A3 Silent p.T679T 0.22 TCGA-HF-7132-01 14 70713306 70713306 A - ADAM21P1 RNA 0.12 TCGA-HF-7132-01 14 71479728 71479728 T C PCNX Silent p.N935N 0.17 TCGA-HF-7132-01 14 73945320 73945320 A G HEATR4 Silent p.A1024A 0.12 TCGA-HF-7132-01 14 74179982 74179982 G A PNMA1 Missense_Mutation p.R121C 0.21 deleterious(0) possibly_damaging(0.651) TCGA-HF-7132-01 14 74428588 74428588 T C COQ6 Silent p.N453N 0.13 TCGA-HF-7132-01 14 75002696 75002696 C T LTBP2 Silent p.P599P 0.19 TCGA-HF-7132-01 14 76905756 76905756 G A ESRRB Silent p.P20P 0.10 TCGA-HF-7132-01 14 77846757 77846757 G A SAMD15 Missense_Mutation p.R574Q 0.19 tolerated(0.3) benign(0.089) TCGA-HF-7132-01 14 80164095 80164095 G C NRXN3 Missense_Mutation p.A874P 0.15 deleterious(0) benign(0.011) TCGA-HF-7132-01 14 81609513 81609513 A - TSHR Frame_Shift_Del p.N372Tfs*40 0.16 TCGA-HF-7132-01 14 81837459 81837459 A G STON2 Silent p.S148S 0.09 TCGA-HF-7132-01 14 81945992 81945992 G A SEL1L Silent p.G713G 0.17 TCGA-HF-7132-01 14 88945359 88945359 G A PTPN21 Missense_Mutation p.R806C 0.26 deleterious_low_confidence(0) possibly_damaging(0.836) TCGA-HF-7132-01 14 88946027 88946027 C T PTPN21 Missense_Mutation p.R583H 0.23 deleterious(0.03) probably_damaging(0.995) TCGA-HF-7132-01 14 93118771 93118772 - C RIN3 Frame_Shift_Ins p.R462Qfs*21 0.14 TCGA-HF-7132-01 14 93760654 93760654 G A BTBD7 Missense_Mutation p.R238C 0.21 deleterious(0.01) possibly_damaging(0.908) TCGA-HF-7132-01 14 94173056 94173056 T A UNC79 Missense_Mutation p.S2395T 0.22 tolerated(0.11) benign(0.101) TCGA-HF-7132-01 14 94423296 94423296 A G ASB2 Intron 0.17 TCGA-HF-7132-01 14 95574428 95574428 A G DICER1 Silent p.I813I 0.23 TCGA-HF-7132-01 14 95590932 95590932 A G DICER1 Missense_Mutation p.V326A 0.26 deleterious(0.01) possibly_damaging(0.84) TCGA-HF-7132-01 14 95670279 95670279 A G CLMN Silent p.A469A 0.13 TCGA-HF-7132-01 15 100636613 100636613 G A ADAMTS17 Silent p.D695D 0.16 TCGA-HF-7132-01 15 101717648 101717648 T - CHSY1 Frame_Shift_Del p.N785Mfs*15 0.27 TCGA-HF-7132-01 15 102224292 102224292 A - TARSL2 Frame_Shift_Del p.C546Afs*10 0.23 TCGA-HF-7132-01 15 20644872 20644872 A G HERC2P3 RNA 0.17 TCGA-HF-7132-01 15 23444751 23444752 AG - AC100757.1 5'Flank 0.25 TCGA-HF-7132-01 15 25959170 25959170 G A ATP10A Silent p.I665I 0.25 TCGA-HF-7132-01 15 32925295 32925296 - A ARHGAP11A Frame_Shift_Ins p.V410Sfs*15 0.18 TCGA-HF-7132-01 15 34640629 34640629 C T NUTM1 Missense_Mutation p.P159L 0.23 tolerated(0.2) benign(0.127) TCGA-HF-7132-01 15 35045231 35045231 G T GJD2 Silent p.G138G 0.21 TCGA-HF-7132-01 15 38988856 38988857 - C C15orf53 Frame_Shift_Ins p.R18Pfs*5 0.12 TCGA-HF-7132-01 15 40477506 40477506 C - BUB1B Frame_Shift_Del p.M300Cfs*31 0.14 TCGA-HF-7132-01 15 40589757 40589757 C - PLCB2 Frame_Shift_Del p.D430Ifs*13 0.15 TCGA-HF-7132-01 15 41364223 41364223 G A INO80 Nonsense_Mutation p.R477* 0.20 TCGA-HF-7132-01 15 41762553 41762553 C T RTF1 Missense_Mutation p.R330C 0.18 tolerated(0.09) benign(0.001) TCGA-HF-7132-01 15 45464123 45464123 C T SHF Missense_Mutation p.R348H 0.24 deleterious(0) probably_damaging(0.996) TCGA-HF-7132-01 15 48634180 48634180 A - DUT Intron 0.37 TCGA-HF-7132-01 15 51697025 51697025 T - GLDN 3'UTR 0.18 TCGA-HF-7132-01 15 51778519 51778519 T - DMXL2 Frame_Shift_Del p.M1745Wfs*6 0.14 TCGA-HF-7132-01 15 52485998 52485998 T C MYO5C 3'UTR 0.14 TCGA-HF-7132-01 15 52877021 52877021 G A FAM214A Nonsense_Mutation p.Q1000* 0.08 TCGA-HF-7132-01 15 55611484 55611484 G - PIGB Frame_Shift_Del p.G14Afs*19 0.25 TCGA-HF-7132-01 15 56386689 56386689 G A RFX7 Silent p.G1079G 0.16 TCGA-HF-7132-01 15 59182636 59182637 CT - SLTM Frame_Shift_Del p.E641Afs*8 0.20 TCGA-HF-7132-01 15 63125880 63125880 G T TLN2 Intron 0.14 TCGA-HF-7132-01 15 64026998 64026998 T C HERC1 Silent p.L857L 0.18 TCGA-HF-7132-01 15 64686218 64686218 A - TRIP4 Frame_Shift_Del p.G61Vfs*4 0.12 TCGA-HF-7132-01 15 64687698 64687698 G A TRIP4 Missense_Mutation p.A125T 0.15 tolerated(0.6) benign(0.001) TCGA-HF-7132-01 15 68643093 68643094 - C ITGA11 Frame_Shift_Ins p.I308Dfs*9 0.14 TCGA-HF-7132-01 15 72459382 72459382 G A GRAMD2 Missense_Mutation p.R142W 0.15 deleterious(0.02) probably_damaging(1) TCGA-HF-7132-01 15 72459394 72459395 - T GRAMD2 Frame_Shift_Ins p.H138Tfs*34 0.12 TCGA-HF-7132-01 15 72954833 72954833 A - GOLGA6B Frame_Shift_Del p.N364Tfs*89 0.10 TCGA-HF-7132-01 15 74476319 74476319 C T STRA6 Missense_Mutation p.R432Q 0.15 tolerated(0.84) benign(0.001) TCGA-HF-7132-01 15 75189976 75189976 G A MPI Missense_Mutation p.G393S 0.10 deleterious(0) probably_damaging(0.974) TCGA-HF-7132-01 15 75941857 75941857 C T SNX33 Silent p.N138N 0.05 TCGA-HF-7132-01 15 75942196 75942196 C A SNX33 Silent p.S251S 0.19 TCGA-HF-7132-01 15 76225438 76225439 - AAT FBXO22 Nonsense_Mutation 0.10 TCGA-HF-7132-01 15 81271767 81271767 G A MESDC2 Silent p.Y166Y 0.07 TCGA-HF-7132-01 15 82335526 82335526 G A MEX3B Missense_Mutation p.T562I 0.13 deleterious(0.02) possibly_damaging(0.807) TCGA-HF-7132-01 15 83518521 83518521 A G HOMER2 Silent p.I337I 0.15 TCGA-HF-7132-01 15 85660938 85660938 C T PDE8A Silent p.S534S 0.12 TCGA-HF-7132-01 15 86124395 86124395 C A AKAP13 Silent p.A1032A 0.08 TCGA-HF-7132-01 15 86284413 86284413 A G AKAP13 Missense_Mutation p.Q2586R 0.23 deleterious(0) probably_damaging(0.988) TCGA-HF-7132-01 15 89392870 89392870 G T ACAN Missense_Mutation p.G645V 0.21 deleterious(0) unknown(0) TCGA-HF-7132-01 15 89760393 89760393 C T RLBP1 Missense_Mutation p.A102T 0.14 tolerated(0.07) possibly_damaging(0.852) TCGA-HF-7132-01 15 91433488 91433488 C T FES Missense_Mutation p.R406C 0.14 tolerated(0.06) possibly_damaging(0.462) TCGA-HF-7132-01 16 1261713 1261713 C T CACNA1H Intron 0.15 TCGA-HF-7132-01 16 1416381 1416381 G A UNKL Missense_Mutation p.R635C 0.26 deleterious(0.04) possibly_damaging(0.806) TCGA-HF-7132-01 16 15501834 15501834 C T MPV17L Silent p.Y152Y 0.09 TCGA-HF-7132-01 16 15832541 15832541 C T MYH11 Missense_Mutation p.R1008Q 0.10 benign(0.295) TCGA-HF-7132-01 16 1709951 1709951 C T CRAMP1L Missense_Mutation p.T767M 0.15 deleterious(0) probably_damaging(0.954) TCGA-HF-7132-01 16 19191811 19191811 C T SYT17 Missense_Mutation p.S94L 0.17 deleterious(0.03) benign(0.019) TCGA-HF-7132-01 16 19548145 19548145 C T CCP110 Missense_Mutation p.A385V 0.06 tolerated(0.65) probably_damaging(0.987) TCGA-HF-7132-01 16 19745048 19745048 A G IQCK Missense_Mutation p.H92R 0.07 tolerated(0.12) benign(0.009) TCGA-HF-7132-01 16 2025090 2025090 C T TBL3 Missense_Mutation p.T209I 0.13 deleterious(0.02) possibly_damaging(0.598) TCGA-HF-7132-01 16 20975853 20975853 G A DNAH3 Missense_Mutation p.A3118V 0.17 deleterious(0.01) probably_damaging(0.934) TCGA-HF-7132-01 16 21053360 21053360 C T DNAH3 Missense_Mutation p.D1543N 0.13 deleterious(0) probably_damaging(1) TCGA-HF-7132-01 16 21060917 21060917 C T DNAH3 Silent p.A1478A 0.19 TCGA-HF-7132-01 16 22926539 22926539 G A HS3ST2 Missense_Mutation p.V254M 0.15 deleterious(0) possibly_damaging(0.75) TCGA-HF-7132-01 16 231069 231069 A G HBQ1 Missense_Mutation p.S131G 0.23 tolerated(0.18) benign(0.002) TCGA-HF-7132-01 16 23569516 23569516 A G UBFD1 Missense_Mutation p.I91V 0.23 tolerated(0.32) benign(0.191) TCGA-HF-7132-01 16 25238448 25238448 C A AQP8 Missense_Mutation p.A221D 0.17 deleterious(0) possibly_damaging(0.723) TCGA-HF-7132-01 16 30749699 30749699 G - SRCAP Frame_Shift_Del p.V2781Sfs*55 0.16 TCGA-HF-7132-01 16 30785346 30785346 C T RNF40 Missense_Mutation p.R973W 0.20 tolerated(0.06) benign(0.056) TCGA-HF-7132-01 16 30991437 30991437 C T SETD1A Missense_Mutation p.R1444W 0.22 unknown(0) TCGA-HF-7132-01 16 31091970 31091971 - C ZNF646 Frame_Shift_Ins p.I1444Hfs*32 0.10 TCGA-HF-7132-01 16 31228238 31228238 G A PYDC1 Missense_Mutation p.R38C 0.28 deleterious(0) probably_damaging(0.953) TCGA-HF-7132-01 16 31383830 31383830 C T ITGAX Silent p.S764S 0.14 TCGA-HF-7132-01 16 31496148 31496149 CT - SLC5A2 Frame_Shift_Del p.F72Rfs*277 0.15 TCGA-HF-7132-01 16 3452110 3452111 - A ZNF174 Frame_Shift_Ins p.N38Kfs*6 0.18 TCGA-HF-7132-01 16 3640830 3640830 C A SLX4 Missense_Mutation p.G937W 0.14 deleterious(0.02) benign(0.01) TCGA-HF-7132-01 16 3706656 3706656 C T DNASE1 Missense_Mutation p.A113V 0.16 tolerated(1) benign(0.001) TCGA-HF-7132-01 16 3777763 3777763 C T CREBBP Missense_Mutation p.D2429N 0.12 unknown(0) TCGA-HF-7132-01 16 437019 437019 C T Z97634.3 Intron 0.11 TCGA-HF-7132-01 16 4700414 4700414 C - MGRN1 Frame_Shift_Del p.H48Tfs*13 0.17 TCGA-HF-7132-01 16 4723603 4723603 C A MGRN1 Silent p.T300T 0.04 TCGA-HF-7132-01 16 4730034 4730034 G A MGRN1 Missense_Mutation p.C356Y 0.11 tolerated_low_confidence(0.06) benign(0.317) TCGA-HF-7132-01 16 48138137 48138137 A G ABCC12 Missense_Mutation p.F939S 0.15 tolerated(0.37) benign(0.014) TCGA-HF-7132-01 16 4908638 4908638 G A UBN1 Missense_Mutation p.D136N 0.21 deleterious(0) probably_damaging(1) TCGA-HF-7132-01 16 51174228 51174228 C T SALL1 Silent p.P635P 0.20 TCGA-HF-7132-01 16 53341746 53341746 G A CHD9 Missense_Mutation p.D2312N 0.10 unknown(0) TCGA-HF-7132-01 16 55690601 55690601 G A SLC6A2 5'UTR 0.22 TCGA-HF-7132-01 16 57691305 57691305 C T GPR56 Silent p.D396D 0.21 TCGA-HF-7132-01 16 58031995 58031995 C G ZNF319 Missense_Mutation p.G59R 0.17 tolerated(0.42) benign(0.004) TCGA-HF-7132-01 16 65016141 65016141 C T CDH11 Missense_Mutation p.D355N 0.22 deleterious(0.02) possibly_damaging(0.55) TCGA-HF-7132-01 16 65038624 65038624 C T CDH11 Missense_Mutation p.R50H 0.18 deleterious(0) possibly_damaging(0.765) TCGA-HF-7132-01 16 67213378 67213378 C T KIAA0895L Missense_Mutation p.G268R 0.22 deleterious(0.02) probably_damaging(0.997) TCGA-HF-7132-01 16 67709886 67709886 C T GFOD2 Silent p.S110S 0.15 TCGA-HF-7132-01 16 68025854 68025854 G A DPEP2 Silent p.C183C 0.24 TCGA-HF-7132-01 16 68293136 68293136 A G PLA2G15 Missense_Mutation p.Y272C 0.06 tolerated(0.12) probably_damaging(0.992) TCGA-HF-7132-01 16 684595 684595 G A C16orf13 Silent p.S183S 0.16 TCGA-HF-7132-01 16 68732297 68732297 C T CDH3 Silent p.D828D 0.25 TCGA-HF-7132-01 16 69184788 69184788 G A CIRH1A Missense_Mutation p.R328Q 0.33 tolerated(0.07) probably_damaging(0.98) TCGA-HF-7132-01 16 69875982 69875982 G A WWP2 Silent p.R178R 0.12 TCGA-HF-7132-01 16 708580 708580 G A WDR90 Missense_Mutation p.R941H 0.18 tolerated(0.07) benign(0) TCGA-HF-7132-01 16 72130798 72130799 AG - DHX38 Frame_Shift_Del p.E136Afs*29 0.15 TCGA-HF-7132-01 16 72845607 72845607 G A ZFHX3 Nonsense_Mutation p.Q1245* 0.22 TCGA-HF-7132-01 16 72993115 72993115 G A ZFHX3 Silent p.S310S 0.12 TCGA-HF-7132-01 16 74485958 74485958 G A GLG1 Missense_Mutation p.A1203V 0.31 tolerated_low_confidence(0.15) benign(0.188) TCGA-HF-7132-01 16 7760731 7760732 - T RBFOX1 Frame_Shift_Ins p.A416Cfs*35 0.11 TCGA-HF-7132-01 16 830735 830735 G A MSLNL Missense_Mutation p.T89I 0.08 possibly_damaging(0.702) TCGA-HF-7132-01 16 83945904 83945904 A G MLYCD Missense_Mutation p.T294A 0.23 tolerated(0.06) benign(0.077) TCGA-HF-7132-01 16 84216854 84216854 G A TAF1C Missense_Mutation p.A135V 0.21 tolerated(0.08) benign(0.003) TCGA-HF-7132-01 16 84229828 84229828 G A ADAD2 Missense_Mutation p.V542I 0.20 tolerated(0.17) benign(0.002) TCGA-HF-7132-01 16 85015579 85015579 C T ZDHHC7 Missense_Mutation p.A150T 0.15 deleterious(0.01) possibly_damaging(0.881) TCGA-HF-7132-01 16 86600927 86600927 C T FOXC2 5'UTR 0.07 TCGA-HF-7132-01 16 8722948 8722948 G A METTL22 Silent p.P165P 0.15 TCGA-HF-7132-01 16 89251636 89251636 C T CDH15 Silent p.N186N 0.31 TCGA-HF-7132-01 16 89936521 89936521 C T SPIRE2 Silent p.G662G 0.09 TCGA-HF-7132-01 16 9857693 9857693 G A GRIN2A Silent p.C1236C 0.21 TCGA-HF-7132-01 17 10209901 10209901 C T MYH13 Missense_Mutation p.A1781T 0.22 deleterious(0.03) possibly_damaging(0.613) TCGA-HF-7132-01 17 10558338 10558338 G T MYH3 Missense_Mutation p.P15H 0.28 deleterious(0.02) probably_damaging(0.995) TCGA-HF-7132-01 17 11998923 11998923 A - MAP2K4 Frame_Shift_Del p.K143Nfs*9 0.10 TCGA-HF-7132-01 17 15217458 15217458 C T TEKT3 Missense_Mutation p.R275H 0.17 deleterious(0.05) benign(0.114) TCGA-HF-7132-01 17 1579927 1579927 C T PRPF8 Missense_Mutation p.A754T 0.26 tolerated(0.28) benign(0.277) TCGA-HF-7132-01 17 16001755 16001755 C T NCOR1 Missense_Mutation p.V916I 0.19 benign(0.004) TCGA-HF-7132-01 17 17698232 17698232 C T RAI1 Missense_Mutation p.A657V 0.23 tolerated(0.06) benign(0.002) TCGA-HF-7132-01 17 17716744 17716744 G A SREBF1 Missense_Mutation p.T1081I 0.29 deleterious(0) possibly_damaging(0.764) TCGA-HF-7132-01 17 17722433 17722433 C T SREBF1 Missense_Mutation p.R351H 0.29 deleterious(0.01) probably_damaging(0.938) TCGA-HF-7132-01 17 18009790 18009790 C T DRG2 Missense_Mutation p.A333V 0.23 deleterious(0.03) possibly_damaging(0.794) TCGA-HF-7132-01 17 18141431 18141431 G A LLGL1 Missense_Mutation p.R652Q 0.41 deleterious(0) possibly_damaging(0.658) TCGA-HF-7132-01 17 20135630 20135630 G C SPECC1 Missense_Mutation p.E755Q 0.21 deleterious(0) probably_damaging(0.98) TCGA-HF-7132-01 17 20135631 20135631 A T SPECC1 Missense_Mutation p.E755V 0.18 deleterious(0) probably_damaging(0.946) TCGA-HF-7132-01 17 20361569 20361569 C A LGALS9B Missense_Mutation p.R87M 0.10 deleterious(0) probably_damaging(0.993) TCGA-HF-7132-01 17 21319255 21319255 G A KCNJ12 Missense_Mutation p.V201M 0.06 deleterious(0) probably_damaging(0.985) TCGA-HF-7132-01 17 2267458 2267458 G T SGSM2 Missense_Mutation p.D305Y 0.28 deleterious(0) possibly_damaging(0.754) TCGA-HF-7132-01 17 26902486 26902486 C T ALDOC Missense_Mutation p.R22Q 0.23 tolerated(0.33) benign(0.004) TCGA-HF-7132-01 17 27051593 27051593 G T TLCD1 Missense_Mutation p.R227S 0.13 deleterious(0) possibly_damaging(0.728) TCGA-HF-7132-01 17 27051685 27051685 C T TLCD1 Missense_Mutation p.R196H 0.21 tolerated(0.57) benign(0.017) TCGA-HF-7132-01 17 28538348 28538348 C T SLC6A4 Silent p.T433T 0.08 TCGA-HF-7132-01 17 31048134 31048134 C T MYO1D Missense_Mutation p.R607Q 0.23 tolerated(0.23) benign(0.065) TCGA-HF-7132-01 17 33289331 33289332 - T ZNF830 Frame_Shift_Ins p.D252* 0.18 TCGA-HF-7132-01 17 33588113 33588113 C T SLFN5 Missense_Mutation p.P379L 0.19 deleterious(0) possibly_damaging(0.873) TCGA-HF-7132-01 17 33802182 33802182 T - SLFN12L Frame_Shift_Del p.V510Cfs*4 0.12 TCGA-HF-7132-01 17 33905039 33905040 AT - PEX12 Frame_Shift_Del p.M1? 0.17 TCGA-HF-7132-01 17 35615203 35615203 A C ACACA Missense_Mutation p.D531E 0.20 tolerated(1) benign(0.001) TCGA-HF-7132-01 17 37826226 37826226 C T PNMT Missense_Mutation p.R145C 0.16 tolerated(0.08) benign(0.012) TCGA-HF-7132-01 17 38188961 38188962 - C MED24 Frame_Shift_Ins p.L293Afs*3 0.16 TCGA-HF-7132-01 17 39114845 39114845 T G KRT39 3'UTR 0.17 TCGA-HF-7132-01 17 39122766 39122766 G A KRT39 Nonsense_Mutation p.R115* 0.26 TCGA-HF-7132-01 17 39274186 39274186 C T KRTAP4-11 Missense_Mutation p.V128M 0.12 deleterious(0.03) unknown(0) TCGA-HF-7132-01 17 39383096 39383096 A C KRTAP9-2 Missense_Mutation p.T64P 0.12 tolerated(0.42) unknown(0) TCGA-HF-7132-01 17 39535917 39535917 C T KRT34 Missense_Mutation p.V261M 0.13 deleterious(0.03) possibly_damaging(0.457) TCGA-HF-7132-01 17 39645760 39645760 C T KRT36 Silent p.A119A 0.20 TCGA-HF-7132-01 17 40460269 40460269 G - STAT5A Frame_Shift_Del p.D662Tfs*2 0.12 TCGA-HF-7132-01 17 40951065 40951065 T C CNTD1 5'UTR 0.19 TCGA-HF-7132-01 17 40971572 40971572 G - BECN1 Frame_Shift_Del p.P85Qfs*4 0.19 TCGA-HF-7132-01 17 41243015 41243015 G A BRCA1 Silent p.S1377S 0.24 TCGA-HF-7132-01 17 43216487 43216487 G T ACBD4 Missense_Mutation p.G263W 0.17 deleterious_low_confidence(0.03) possibly_damaging(0.572) TCGA-HF-7132-01 17 4451584 4451584 C T MYBBP1A Silent p.T526T 0.04 TCGA-HF-7132-01 17 45822254 45822254 C T TBX21 Missense_Mutation p.A377V 0.11 tolerated(0.32) benign(0.14) TCGA-HF-7132-01 17 46804268 46804268 G A HOXB13 Missense_Mutation p.R247C 0.20 deleterious(0) probably_damaging(0.999) TCGA-HF-7132-01 17 46804341 46804341 C T HOXB13 Silent p.P222P 0.17 TCGA-HF-7132-01 17 46804379 46804379 C T HOXB13 Missense_Mutation p.A210T 0.19 tolerated(0.59) benign(0.005) TCGA-HF-7132-01 17 47075064 47075064 G A IGF2BP1 5'UTR 0.11 TCGA-HF-7132-01 17 48072046 48072046 T C DLX3 Missense_Mutation p.Q106R 0.25 tolerated(0.13) possibly_damaging(0.482) TCGA-HF-7132-01 17 48703700 48703700 G A CACNA1G Missense_Mutation p.R2241Q 0.19 tolerated(0.06) benign(0.217) TCGA-HF-7132-01 17 48940335 48940335 T - TOB1 3'UTR 0.17 TCGA-HF-7132-01 17 51901032 51901032 G A KIF2B Missense_Mutation p.R213H 0.11 deleterious(0) possibly_damaging(0.891) TCGA-HF-7132-01 17 5463094 5463094 G A NLRP1 Nonsense_Mutation p.R308* 0.19 TCGA-HF-7132-01 17 57937750 57937750 T C TUBD1 Missense_Mutation p.E432G 0.15 deleterious(0.03) benign(0.015) TCGA-HF-7132-01 17 58740624 58740624 A - PPM1D Frame_Shift_Del p.N512Ifs*2 0.23 TCGA-HF-7132-01 17 60503712 60503712 C T METTL2A Silent p.H85H 0.14 TCGA-HF-7132-01 17 61657219 61657219 G - DCAF7 Intron 0.13 TCGA-HF-7132-01 17 62144207 62144207 G A ERN1 Silent p.Y222Y 0.23 TCGA-HF-7132-01 17 62272398 62272398 G A TEX2 Missense_Mutation p.H568Y 0.21 deleterious(0) probably_damaging(0.991) TCGA-HF-7132-01 17 63533495 63533495 C T AXIN2 Silent p.S553S 0.10 TCGA-HF-7132-01 17 6367630 6367630 G C PITPNM3 Missense_Mutation p.I672M 0.31 deleterious(0) benign(0.271) TCGA-HF-7132-01 17 6511778 6511778 T C KIAA0753 Silent p.A573A 0.20 TCGA-HF-7132-01 17 66982324 66982324 C T ABCA9 Missense_Mutation p.A1397T 0.17 tolerated(0.14) possibly_damaging(0.715) TCGA-HF-7132-01 17 6927843 6927843 A G BCL6B Silent p.R175R 0.28 TCGA-HF-7132-01 17 7077301 7077301 G A ASGR1 Missense_Mutation p.T227M 0.29 deleterious(0) probably_damaging(0.972) TCGA-HF-7132-01 17 7212946 7212946 C T EIF5A Missense_Mutation p.P28S 0.10 tolerated_low_confidence(0.44) benign(0) TCGA-HF-7132-01 17 72764648 72764648 G A SLC9A3R1 Silent p.A310A 0.25 TCGA-HF-7132-01 17 72787133 72787133 C T TMEM104 Missense_Mutation p.R129W 0.22 deleterious(0) probably_damaging(0.998) TCGA-HF-7132-01 17 72926469 72926469 A G OTOP2 Missense_Mutation p.N247D 0.11 deleterious(0) probably_damaging(0.969) TCGA-HF-7132-01 17 72956336 72956336 G A HID1 Silent p.L246L 0.30 TCGA-HF-7132-01 17 73059134 73059134 C T KCTD2 Missense_Mutation p.R262W 0.16 deleterious(0) probably_damaging(0.997) TCGA-HF-7132-01 17 73238457 73238457 C T GGA3 Missense_Mutation p.S236N 0.28 tolerated(0.19) benign(0.012) TCGA-HF-7132-01 17 7369702 7369702 A G ZBTB4 Missense_Mutation p.L140P 0.14 possibly_damaging(0.902) TCGA-HF-7132-01 17 73808347 73808347 C T UNK Missense_Mutation p.R157C 0.26 deleterious(0) probably_damaging(0.997) TCGA-HF-7132-01 17 74004016 74004016 C T EVPL Missense_Mutation p.R1757H 0.12 deleterious(0.02) benign(0.099) TCGA-HF-7132-01 17 74004807 74004807 G A EVPL Silent p.T1493T 0.16 TCGA-HF-7132-01 17 74005247 74005247 C T EVPL Missense_Mutation p.A1347T 0.37 tolerated(0.39) benign(0.016) TCGA-HF-7132-01 17 74865078 74865078 C T MGAT5B 5'Flank 0.13 TCGA-HF-7132-01 17 75208264 75208266 AAG - SEC14L1 In_Frame_Del p.E616del 0.25 TCGA-HF-7132-01 17 7578555 7578555 C T TP53 Splice_Site p.X126_splice 0.17 TCGA-HF-7132-01 17 76134211 76134212 - C TMC8 Frame_Shift_Ins p.L494Pfs*7 0.15 TCGA-HF-7132-01 17 76446422 76446422 G A DNAH17 Missense_Mutation p.R3638C 0.25 probably_damaging(0.992) TCGA-HF-7132-01 17 76456287 76456287 G A DNAH17 Missense_Mutation p.P3117L 0.19 probably_damaging(0.978) TCGA-HF-7132-01 17 76533563 76533563 C G DNAH17 Missense_Mutation p.E893Q 0.09 benign(0.01) TCGA-HF-7132-01 17 7805989 7805989 G A CHD3 Missense_Mutation p.R1164H 0.32 possibly_damaging(0.812) TCGA-HF-7132-01 17 78082611 78082611 G A GAA Missense_Mutation p.R437H 0.55 tolerated(0.94) benign(0.006) TCGA-HF-7132-01 17 78363971 78363971 G A RNF213 Missense_Mutation p.E5149K 0.14 benign(0.018) TCGA-HF-7132-01 17 78403704 78403704 C T ENDOV Intron 0.27 TCGA-HF-7132-01 17 79564302 79564302 C T NPLOC4 Missense_Mutation p.R321Q 0.28 tolerated(0.51) possibly_damaging(0.908) TCGA-HF-7132-01 17 7978994 7978994 C T ALOX12B Missense_Mutation p.A525T 0.21 tolerated(0.24) benign(0.139) TCGA-HF-7132-01 17 79866891 79866891 C G PCYT2 Silent p.G67G 0.09 TCGA-HF-7132-01 17 79913388 79913388 C A NOTUM Nonsense_Mutation p.E341* 0.16 TCGA-HF-7132-01 17 80393683 80393683 G A HEXDC Missense_Mutation p.R189H 0.17 tolerated(0.6) benign(0.001) TCGA-HF-7132-01 17 80399708 80399708 G A HEXDC Missense_Mutation p.A429T 0.30 deleterious_low_confidence(0) benign(0.101) TCGA-HF-7132-01 17 80606149 80606149 C T WDR45B Splice_Site p.X23_splice 0.16 TCGA-HF-7132-01 17 80788991 80788991 G A ZNF750 Missense_Mutation p.P447L 0.31 tolerated(0.28) benign(0) TCGA-HF-7132-01 17 8192959 8192959 G T SLC25A35 Missense_Mutation p.P288Q 0.22 tolerated_low_confidence(0.36) benign(0.114) TCGA-HF-7132-01 17 9837547 9837547 G A GAS7 Missense_Mutation p.A274V 0.50 deleterious(0.01) possibly_damaging(0.627) TCGA-HF-7132-01 18 11872328 11872328 G A GNAL Missense_Mutation p.V365I 0.17 tolerated(0.51) benign(0.098) TCGA-HF-7132-01 18 13067918 13067918 C T CEP192 Missense_Mutation p.T1526M 0.10 deleterious(0) probably_damaging(0.993) TCGA-HF-7132-01 18 14179529 14179529 G A ANKRD20A5P RNA 0.34 TCGA-HF-7132-01 18 19154054 19154054 T - ESCO1 Frame_Shift_Del p.M251Wfs*12 0.17 TCGA-HF-7132-01 18 21118569 21118569 C - NPC1 Frame_Shift_Del p.G993Efs*4 0.15 TCGA-HF-7132-01 18 33848655 33848655 T A MOCOS 3'UTR 0.23 TCGA-HF-7132-01 18 42532870 42532870 C T SETBP1 Missense_Mutation p.R1189W 0.12 deleterious(0) probably_damaging(0.998) TCGA-HF-7132-01 18 42618454 42618454 G T SETBP1 Missense_Mutation p.M1335I 0.20 tolerated(0.81) benign(0.001) TCGA-HF-7132-01 18 43534514 43534516 TGA - EPG5 In_Frame_Del p.H284del 0.09 TCGA-HF-7132-01 18 44392503 44392503 T C PIAS2 Missense_Mutation p.S587G 0.17 tolerated_low_confidence(0.3) benign(0.153) TCGA-HF-7132-01 18 47792706 47792706 C A CCDC11 Silent p.V23V 0.03 TCGA-HF-7132-01 18 48190761 48190761 G A MAPK4 Missense_Mutation p.V145M 0.17 deleterious(0) probably_damaging(0.934) TCGA-HF-7132-01 18 52575028 52575028 A G CCDC68 Silent p.A313A 0.14 TCGA-HF-7132-01 18 5291431 5291431 G A ZBTB14 Missense_Mutation p.A259V 0.20 tolerated(0.2) benign(0.43) TCGA-HF-7132-01 18 61600331 61600331 T - SERPINB10 Frame_Shift_Del p.H230Tfs*2 0.21 TCGA-HF-7132-01 18 66504103 66504103 C - CCDC102B Frame_Shift_Del p.R37Gfs*89 0.13 TCGA-HF-7132-01 18 74700413 74700413 C T RP11-862L9.3 3'Flank 0.16 TCGA-HF-7132-01 18 7955127 7955127 G A PTPRM Missense_Mutation p.V283I 0.16 tolerated(0.08) benign(0.039) TCGA-HF-7132-01 18 8253339 8253339 G T PTPRM Missense_Mutation p.R894L 0.13 deleterious(0) probably_damaging(0.927) TCGA-HF-7132-01 18 8813022 8813022 G A SOGA2 Missense_Mutation p.A884T 0.16 tolerated(0.59) benign(0.001) TCGA-HF-7132-01 18 909675 909675 G A ADCYAP1 3'UTR 0.21 TCGA-HF-7132-01 19 1065352 1065352 G A ABCA7 Silent p.A2123A 0.15 TCGA-HF-7132-01 19 10670506 10670506 C A KRI1 Nonsense_Mutation p.E309* 0.07 TCGA-HF-7132-01 19 11118655 11118655 A C SMARCA4 Silent p.P693P 0.23 TCGA-HF-7132-01 19 11224068 11224068 C T LDLR Missense_Mutation p.T434M 0.17 tolerated(0.48) benign(0.01) TCGA-HF-7132-01 19 11304103 11304103 A G KANK2 Missense_Mutation p.V218A 0.09 deleterious(0.02) probably_damaging(0.994) TCGA-HF-7132-01 19 11565617 11565617 C T ELAVL3 Silent p.S276S 0.15 TCGA-HF-7132-01 19 11598654 11598654 C A ZNF653 Missense_Mutation p.E208D 0.20 tolerated(0.13) benign(0.004) TCGA-HF-7132-01 19 11616975 11616975 C T ECSIT 3'UTR 0.15 TCGA-HF-7132-01 19 11624896 11624896 C T ECSIT Silent p.A79A 0.27 TCGA-HF-7132-01 19 12691650 12691650 A C ZNF490 Silent p.T413T 0.06 TCGA-HF-7132-01 19 12692077 12692077 T - ZNF490 Frame_Shift_Del p.N271Ifs*24 0.26 TCGA-HF-7132-01 19 12985201 12985201 G A MAST1 Silent p.A1410A 0.21 TCGA-HF-7132-01 19 13063555 13063555 G T RAD23A Missense_Mutation p.G289V 0.07 tolerated(0.22) benign(0.081) TCGA-HF-7132-01 19 14031609 14031609 G A CC2D1A Silent p.L505L 0.18 TCGA-HF-7132-01 19 14037633 14037633 G T CC2D1A Splice_Site p.X692_splice 0.20 TCGA-HF-7132-01 19 14581060 14581060 G A PKN1 Silent p.T799T 0.10 TCGA-HF-7132-01 19 15273306 15273307 - T NOTCH3 Frame_Shift_Ins p.N1961Kfs*5 0.16 TCGA-HF-7132-01 19 15918418 15918418 G T OR10H1 Missense_Mutation p.L144M 0.12 deleterious(0.02) probably_damaging(0.979) TCGA-HF-7132-01 19 16620329 16620329 A - C19orf44 Frame_Shift_Del p.T392Qfs*70 0.18 TCGA-HF-7132-01 19 17088270 17088270 G - CPAMD8 Frame_Shift_Del p.G604Vfs*33 0.09 TCGA-HF-7132-01 19 17394394 17394394 G A ANKLE1 Missense_Mutation p.R274H 0.15 tolerated(0.68) benign(0.002) TCGA-HF-7132-01 19 17780379 17780379 C T UNC13A Missense_Mutation p.R126H 0.12 tolerated_low_confidence(0.09) benign(0.001) TCGA-HF-7132-01 19 17838443 17838443 G A MAP1S Silent p.A750A 0.24 TCGA-HF-7132-01 19 18256012 18256012 C T MAST3 Silent p.D975D 0.27 TCGA-HF-7132-01 19 1828274 1828274 C T REXO1 Missense_Mutation p.A172T 0.29 tolerated(0.28) benign(0.001) TCGA-HF-7132-01 19 18321983 18321983 T G PDE4C Missense_Mutation p.E632A 0.04 tolerated(0.08) benign(0.005) TCGA-HF-7132-01 19 18331973 18331973 G A PDE4C Missense_Mutation p.R163W 0.16 deleterious(0) probably_damaging(0.993) TCGA-HF-7132-01 19 18502805 18502805 C T LRRC25 Missense_Mutation p.G304R 0.25 deleterious(0.01) possibly_damaging(0.468) TCGA-HF-7132-01 19 1880973 1880973 G A ABHD17A Missense_Mutation p.A136V 0.24 tolerated(0.33) unknown(0) TCGA-HF-7132-01 19 19625901 19625901 C T TSSK6 Silent p.A112A 0.23 TCGA-HF-7132-01 19 2345252 2345252 G A SPPL2B Intron 0.18 TCGA-HF-7132-01 19 2733324 2733324 C T SLC39A3 Missense_Mutation p.G124R 0.18 deleterious(0.01) probably_damaging(0.922) TCGA-HF-7132-01 19 2877955 2877955 C T ZNF556 Silent p.H333H 0.15 TCGA-HF-7132-01 19 2989174 2989174 G T TLE6 Missense_Mutation p.G286W 0.10 deleterious(0) probably_damaging(1) TCGA-HF-7132-01 19 30502126 30502126 G A URI1 Silent p.T387T 0.27 TCGA-HF-7132-01 19 30935293 30935293 G A ZNF536 Missense_Mutation p.R275H 0.42 deleterious(0) probably_damaging(0.999) TCGA-HF-7132-01 19 31770656 31770656 A G TSHZ3 Missense_Mutation p.Y15H 0.08 deleterious(0) probably_damaging(0.986) TCGA-HF-7132-01 19 35504571 35504571 A C GRAMD1A Silent p.R282R 0.17 TCGA-HF-7132-01 19 3600260 3600260 C T TBXA2R Missense_Mutation p.A125T 0.17 tolerated(0.73) benign(0.009) TCGA-HF-7132-01 19 36149497 36149497 T C COX6B1 Missense_Mutation p.V70A 0.22 deleterious(0.03) benign(0.26) TCGA-HF-7132-01 19 36234928 36234928 C T U2AF1L4 Intron 0.22 TCGA-HF-7132-01 19 36357214 36357214 C - KIRREL2 Frame_Shift_Del p.C652Afs*79 0.43 TCGA-HF-7132-01 19 37903917 37903917 T - ZNF569 Frame_Shift_Del p.K548Sfs*22 0.22 TCGA-HF-7132-01 19 38028415 38028415 T - ZNF793 Frame_Shift_Del p.C288Vfs*113 0.24 TCGA-HF-7132-01 19 38782560 38782560 C T SPINT2 Missense_Mutation p.R225W 0.21 deleterious(0) benign(0.001) TCGA-HF-7132-01 19 38937165 38937165 T G RYR1 Missense_Mutation p.C229G 0.13 benign(0.225) TCGA-HF-7132-01 19 39435738 39435738 G A CTC-360G5.8 Silent p.G93G 0.15 TCGA-HF-7132-01 19 40331067 40331067 C T FBL Silent p.P90P 0.18 TCGA-HF-7132-01 19 40512086 40512087 - A ZNF546 Frame_Shift_Ins p.N57Kfs*7 0.10 TCGA-HF-7132-01 19 40541351 40541351 G A ZNF780B Missense_Mutation p.P472L 0.20 deleterious(0.01) possibly_damaging(0.46) TCGA-HF-7132-01 19 40829912 40829912 C A C19orf47 Splice_Site p.X258_splice 0.12 TCGA-HF-7132-01 19 40889748 40889748 G T HIPK4 Missense_Mutation p.P255H 0.14 tolerated(0.07) benign(0.063) TCGA-HF-7132-01 19 41356252 41356252 C G CYP2A6 Missense_Mutation p.R27T 0.16 possibly_damaging(0.58) TCGA-HF-7132-01 19 41808818 41808818 G - HNRNPUL1 Frame_Shift_Del p.G647Efs*268 0.17 TCGA-HF-7132-01 19 41822684 41822684 C A CCDC97 Missense_Mutation p.R148S 0.19 deleterious(0.05) probably_damaging(0.998) TCGA-HF-7132-01 19 4323385 4323385 G A FSD1 Silent p.L444L 0.12 TCGA-HF-7132-01 19 4445546 4445546 C T UBXN6 Silent p.P425P 0.20 TCGA-HF-7132-01 19 44513052 44513052 G A ZNF230 Silent p.T42T 0.16 TCGA-HF-7132-01 19 45480718 45480718 G T CLPTM1 Splice_Site p.X196_splice 0.17 TCGA-HF-7132-01 19 45570838 45570838 C T CLASRP Silent p.G551G 0.23 TCGA-HF-7132-01 19 45912137 45912137 G T CD3EAP Missense_Mutation p.G304V 0.13 deleterious(0.01) probably_damaging(0.933) TCGA-HF-7132-01 19 46133284 46133284 A G EML2 Silent p.C378C 0.12 TCGA-HF-7132-01 19 46177354 46177354 G A GIPR Missense_Mutation p.R136Q 0.12 tolerated(0.37) benign(0.065) TCGA-HF-7132-01 19 46376132 46376132 G A FOXA3 Missense_Mutation p.G290E 0.18 tolerated(0.39) benign(0.097) TCGA-HF-7132-01 19 46522823 46522823 G T PGLYRP1 Missense_Mutation p.P124T 0.28 tolerated(0.19) benign(0.004) TCGA-HF-7132-01 19 47204366 47204366 C A PRKD2 Missense_Mutation p.C298F 0.06 deleterious(0) probably_damaging(0.942) TCGA-HF-7132-01 19 47423229 47423229 C T ARHGAP35 Nonsense_Mutation p.R433* 0.24 TCGA-HF-7132-01 19 47503931 47503931 G A ARHGAP35 Missense_Mutation p.E1496K 0.28 tolerated_low_confidence(0.36) unknown(0) TCGA-HF-7132-01 19 47572412 47572412 C G ZC3H4 Missense_Mutation p.E779Q 0.05 unknown(0) TCGA-HF-7132-01 19 49557610 49557610 G A CGB7 Missense_Mutation p.P146S 0.18 tolerated_low_confidence(0.83) benign(0.325) TCGA-HF-7132-01 19 49939837 49939837 G A SLC17A7 Missense_Mutation p.T95M 0.18 deleterious(0) probably_damaging(0.932) TCGA-HF-7132-01 19 50128211 50128211 G A PRR12 Silent p.T1944T 0.28 TCGA-HF-7132-01 19 50961933 50961933 C T MYBPC2 Nonsense_Mutation p.R810* 0.37 TCGA-HF-7132-01 19 51330155 51330155 C T KLK15 Missense_Mutation p.A154T 0.19 tolerated(1) benign(0.003) TCGA-HF-7132-01 19 51455908 51455908 A G KLK5 Silent p.A2A 0.19 TCGA-HF-7132-01 19 51645721 51645721 G A SIGLEC7 Missense_Mutation p.S32N 0.21 tolerated(0.15) benign(0.206) TCGA-HF-7132-01 19 52034722 52034722 G A SIGLEC6 Missense_Mutation p.T40M 0.18 tolerated(0.12) possibly_damaging(0.614) TCGA-HF-7132-01 19 52196187 52196187 G A SPACA6P-AS RNA 0.31 TCGA-HF-7132-01 19 52658932 52658932 A G ZNF836 Silent p.C668C 0.17 TCGA-HF-7132-01 19 52825457 52825457 T C ZNF480 Silent p.N318N 0.17 TCGA-HF-7132-01 19 53571638 53571638 G A ZNF160 Missense_Mutation p.R717C 0.08 deleterious(0.05) probably_damaging(0.977) TCGA-HF-7132-01 19 54080826 54080826 T G ZNF331 Missense_Mutation p.W338G 0.22 tolerated(0.33) probably_damaging(0.996) TCGA-HF-7132-01 19 54872627 54872627 C T LAIR1 Missense_Mutation p.R87H 0.18 tolerated(0.55) benign(0.001) TCGA-HF-7132-01 19 54947572 54947572 T C TTYH1 3'UTR 0.10 TCGA-HF-7132-01 19 55377854 55377854 G T KIR3DL2 Missense_Mutation p.G379W 0.18 deleterious(0.02) probably_damaging(0.941) TCGA-HF-7132-01 19 55570558 55570558 C T RDH13 Missense_Mutation p.G51R 0.36 deleterious(0) probably_damaging(0.999) TCGA-HF-7132-01 19 55607662 55607662 C T PPP1R12C Silent p.E331E 0.09 TCGA-HF-7132-01 19 56416401 56416401 C T NLRP13 Missense_Mutation p.R842Q 0.25 tolerated(0.42) probably_damaging(0.99) TCGA-HF-7132-01 19 56487605 56487605 G T NLRP8 Missense_Mutation p.D938Y 0.22 deleterious(0) probably_damaging(0.995) TCGA-HF-7132-01 19 56935008 56935008 T C ZNF583 Silent p.I327I 0.24 TCGA-HF-7132-01 19 57133365 57133365 C T ZNF71 Missense_Mutation p.T237M 0.23 deleterious(0) probably_damaging(0.998) TCGA-HF-7132-01 19 5832493 5832493 C T FUT6 Missense_Mutation p.C29Y 0.24 deleterious(0.03) probably_damaging(0.987) TCGA-HF-7132-01 19 5866758 5866758 C T FUT5 Missense_Mutation p.A327T 0.30 tolerated(0.5) benign(0.013) TCGA-HF-7132-01 19 58805558 58805558 G A ZNF8 Silent p.P128P 0.15 TCGA-HF-7132-01 19 58946494 58946494 G A ZNF132 Missense_Mutation p.A106V 0.22 tolerated(0.17) benign(0.005) TCGA-HF-7132-01 19 59060104 59060104 C T TRIM28 Intron 0.11 TCGA-HF-7132-01 19 59060698 59060698 G C TRIM28 Missense_Mutation p.E555Q 0.06 tolerated(0.21) benign(0.177) TCGA-HF-7132-01 19 5918537 5918537 C A RANBP3 Missense_Mutation p.E481D 0.25 deleterious(0.04) probably_damaging(0.938) TCGA-HF-7132-01 19 621236 621236 G A POLRMT Missense_Mutation p.A821V 0.17 tolerated(0.12) benign(0.116) TCGA-HF-7132-01 19 6466890 6466890 C - CRB3 Intron 0.11 TCGA-HF-7132-01 19 7184545 7184545 G A INSR Silent p.C252C 0.16 TCGA-HF-7132-01 19 7671163 7671163 C A CAMSAP3 Missense_Mutation p.H137N 0.15 deleterious(0) probably_damaging(0.997) TCGA-HF-7132-01 19 7964762 7964763 - C LRRC8E Frame_Shift_Ins p.L456Afs*156 0.24 TCGA-HF-7132-01 19 852351 852351 C T ELANE Missense_Mutation p.A8V 0.16 tolerated(0.07) benign(0.008) TCGA-HF-7132-01 19 852391 852391 G - ELANE Frame_Shift_Del 0.19 TCGA-HF-7132-01 19 8595116 8595116 G A MYO1F Silent p.F764F 0.09 TCGA-HF-7132-01 19 8842032 8842032 C T OR2Z1 Silent p.I214I 0.22 TCGA-HF-7132-01 19 9017469 9017469 G A MUC16 Missense_Mutation p.R12619C 0.09 probably_damaging(0.923) TCGA-HF-7132-01 19 9069476 9069476 T C MUC16 Silent p.S5990S 0.14 TCGA-HF-7132-01 19 9296724 9296725 - A OR7D2 Frame_Shift_Ins p.A91Sfs*31 0.20 TCGA-HF-7132-01 1 100345545 100345545 A C AGL Missense_Mutation p.S560R 0.13 deleterious(0.03) benign(0.115) TCGA-HF-7132-01 1 100608734 100608734 A C TRMT13 Missense_Mutation p.R237S 0.18 deleterious(0) probably_damaging(1) TCGA-HF-7132-01 1 100964688 100964688 G A CDC14A Missense_Mutation p.S542N 0.20 tolerated_low_confidence(0.12) benign(0.011) TCGA-HF-7132-01 1 100964751 100964751 C T CDC14A Missense_Mutation p.T563I 0.24 tolerated_low_confidence(0.11) benign(0.046) TCGA-HF-7132-01 1 10132092 10132092 C T UBE4B Missense_Mutation p.R11W 0.26 deleterious(0) possibly_damaging(0.689) TCGA-HF-7132-01 1 101456081 101456081 T C DPH5 Silent p.E247E 0.16 TCGA-HF-7132-01 1 108315356 108315356 C T VAV3 Splice_Site p.X185_splice 0.05 TCGA-HF-7132-01 1 109815573 109815573 C A CELSR2 Silent p.A2754A 0.24 TCGA-HF-7132-01 1 110592993 110592993 G A STRIP1 Missense_Mutation p.V640M 0.15 deleterious(0) probably_damaging(0.961) TCGA-HF-7132-01 1 110593031 110593031 G A STRIP1 Silent p.L652L 0.11 TCGA-HF-7132-01 1 11126761 11126761 C T EXOSC10 3'UTR 0.18 TCGA-HF-7132-01 1 115261289 115261289 G A CSDE1 Missense_Mutation p.A811V 0.12 tolerated(0.11) possibly_damaging(0.466) TCGA-HF-7132-01 1 120337204 120337204 G A REG4 3'UTR 0.16 TCGA-HF-7132-01 1 12835720 12835720 G A PRAMEF12 Missense_Mutation p.V108M 0.14 deleterious(0.01) probably_damaging(0.986) TCGA-HF-7132-01 1 1390849 1390849 C T ATAD3C Missense_Mutation p.R130W 0.08 deleterious(0) benign(0.032) TCGA-HF-7132-01 1 14106600 14106601 - A PRDM2 Frame_Shift_Ins p.S773Ifs*19 0.11 TCGA-HF-7132-01 1 149885257 149885257 A G SV2A Missense_Mutation p.Y46H 0.18 deleterious_low_confidence(0.02) possibly_damaging(0.674) TCGA-HF-7132-01 1 149949436 149949436 C T OTUD7B Missense_Mutation p.D4N 0.23 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-HF-7132-01 1 150676776 150676776 T - HORMAD1 Frame_Shift_Del p.N283Tfs*12 0.16 TCGA-HF-7132-01 1 151316303 151316303 G A RFX5 Missense_Mutation p.A204V 0.18 deleterious(0.02) probably_damaging(0.991) TCGA-HF-7132-01 1 151733319 151733319 C T MRPL9 Silent p.R215R 0.16 TCGA-HF-7132-01 1 151849481 151849481 C T THEM4 Silent p.A226A 0.29 TCGA-HF-7132-01 1 152278793 152278793 G A FLG Missense_Mutation p.R2857C 0.19 benign(0.058) TCGA-HF-7132-01 1 153043248 153043248 C T SPRR2B Missense_Mutation p.C23Y 0.08 deleterious_low_confidence(0) unknown(0) TCGA-HF-7132-01 1 153932722 153932722 T C SLC39A1 Missense_Mutation p.E276G 0.26 deleterious(0) probably_damaging(0.952) TCGA-HF-7132-01 1 153934820 153934820 C T SLC39A1 Missense_Mutation p.R65H 0.24 tolerated(0.53) benign(0.067) TCGA-HF-7132-01 1 154246391 154246391 C - HAX1 Frame_Shift_Del p.Q155Nfs*59 0.14 TCGA-HF-7132-01 1 154987844 154987844 G T ZBTB7B Missense_Mutation p.E270D 0.07 tolerated(0.34) possibly_damaging(0.801) TCGA-HF-7132-01 1 155030333 155030333 C A ADAM15 Missense_Mutation p.P475T 0.24 deleterious(0.01) probably_damaging(0.933) TCGA-HF-7132-01 1 155103890 155103890 T A EFNA1 Missense_Mutation p.D56E 0.14 tolerated(0.71) benign(0.002) TCGA-HF-7132-01 1 155106560 155106560 T C EFNA1 3'UTR 0.17 TCGA-HF-7132-01 1 155177624 155177626 AGG - THBS3 In_Frame_Del p.L15del 0.12 TCGA-HF-7132-01 1 155300385 155300386 TG - RUSC1 3'UTR 0.28 TCGA-HF-7132-01 1 155837764 155837764 C T SYT11 Missense_Mutation p.P15S 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-HF-7132-01 1 155885594 155885594 G A KIAA0907 Intron 0.20 TCGA-HF-7132-01 1 155939051 155939051 C T ARHGEF2 Missense_Mutation p.R35H 0.19 deleterious(0.03) probably_damaging(0.998) TCGA-HF-7132-01 1 156256115 156256115 G A TMEM79 Silent p.R274R 0.20 TCGA-HF-7132-01 1 156552170 156552170 C T TTC24 Missense_Mutation p.A285V 0.16 tolerated(0.09) possibly_damaging(0.606) TCGA-HF-7132-01 1 156696887 156696887 C T ISG20L2 Missense_Mutation p.M186I 0.22 deleterious(0) probably_damaging(0.985) TCGA-HF-7132-01 1 156714103 156714103 G T HDGF Missense_Mutation p.P130Q 0.27 deleterious(0.04) possibly_damaging(0.536) TCGA-HF-7132-01 1 156767101 156767101 C T PRCC Missense_Mutation p.R453W 0.07 deleterious(0.01) possibly_damaging(0.77) TCGA-HF-7132-01 1 156823941 156823941 G A INSRR Silent p.T80T 0.11 TCGA-HF-7132-01 1 156909626 156909626 G A ARHGEF11 Silent p.P1270P 0.13 TCGA-HF-7132-01 1 157668338 157668338 C T FCRL3 Missense_Mutation p.S45N 0.19 tolerated(0.33) benign(0.012) TCGA-HF-7132-01 1 158906961 158906961 A - PYHIN1 Frame_Shift_Del p.V89Lfs*13 0.15 TCGA-HF-7132-01 1 161069416 161069416 T C KLHDC9 Missense_Mutation p.M239T 0.15 tolerated(0.98) benign(0) TCGA-HF-7132-01 1 163043401 163043401 G A RGS4 Missense_Mutation p.A220T 0.21 deleterious(0) probably_damaging(0.997) TCGA-HF-7132-01 1 16342044 16342044 G A HSPB7 3'UTR 0.19 TCGA-HF-7132-01 1 16475183 16475183 C - EPHA2 Frame_Shift_Del p.P172Rfs*221 0.14 TCGA-HF-7132-01 1 166926055 166926056 - C ILDR2 Frame_Shift_Ins p.D139Rfs*14 0.12 TCGA-HF-7132-01 1 173545802 173545802 A G SLC9C2 Silent p.T300T 0.28 TCGA-HF-7132-01 1 173950010 173950010 C T RC3H1 Silent p.Q302Q 0.24 TCGA-HF-7132-01 1 175048557 175048557 C T TNN Silent p.C166C 0.21 TCGA-HF-7132-01 1 179314166 179314166 A C SOAT1 Missense_Mutation p.S358R 0.18 deleterious(0) probably_damaging(0.947) TCGA-HF-7132-01 1 179364323 179364323 G A AXDND1 Silent p.A365A 0.09 TCGA-HF-7132-01 1 182853799 182853799 G T DHX9 Silent p.R1104R 0.23 TCGA-HF-7132-01 1 185833648 185833648 C A HMCN1 Missense_Mutation p.A129D 0.21 probably_damaging(0.995) TCGA-HF-7132-01 1 18809705 18809705 A G KLHDC7A Missense_Mutation p.R744G 0.21 deleterious(0.05) benign(0.159) TCGA-HF-7132-01 1 197026324 197026324 T C F13B Silent p.G330G 0.23 TCGA-HF-7132-01 1 197094202 197094202 C T ASPM Missense_Mutation p.R1019Q 0.13 tolerated(0.11) benign(0.087) TCGA-HF-7132-01 1 19981835 19981835 C T MINOS1-NBL1 Silent p.C63C 0.08 TCGA-HF-7132-01 1 201182505 201182505 A G IGFN1 Silent p.G2828G 0.16 TCGA-HF-7132-01 1 201183365 201183365 C T IGFN1 Missense_Mutation p.A2930V 0.16 possibly_damaging(0.813) TCGA-HF-7132-01 1 201682022 201682022 C A NAV1 Missense_Mutation p.L279M 0.16 deleterious(0) probably_damaging(1) TCGA-HF-7132-01 1 201780773 201780773 C T NAV1 Missense_Mutation p.R1614W 0.16 deleterious(0) probably_damaging(0.985) TCGA-HF-7132-01 1 201926416 201926416 C T TIMM17A Nonsense_Mutation p.R12* 0.30 TCGA-HF-7132-01 1 202386024 202386024 G A PPP1R12B Missense_Mutation p.C134Y 0.25 deleterious(0) probably_damaging(0.998) TCGA-HF-7132-01 1 202894275 202894275 C T KLHL12 Missense_Mutation p.A6T 0.09 tolerated(0.17) benign(0.032) TCGA-HF-7132-01 1 204948564 204948564 G A NFASC Missense_Mutation p.V685I 0.21 tolerated(0.48) possibly_damaging(0.58) TCGA-HF-7132-01 1 205042917 205042917 C T CNTN2 3'UTR 0.35 TCGA-HF-7132-01 1 206648304 206648304 G A IKBKE Missense_Mutation p.E109K 0.10 deleterious(0) probably_damaging(0.973) TCGA-HF-7132-01 1 207789961 207789961 C T CR1 Missense_Mutation p.H2235Y 0.11 deleterious(0.02) probably_damaging(0.991) TCGA-HF-7132-01 1 208062131 208062131 T A CD34 Missense_Mutation p.T290S 0.14 deleterious(0) probably_damaging(0.989) TCGA-HF-7132-01 1 208390710 208390710 C A PLXNA2 Silent p.T186T 0.14 TCGA-HF-7132-01 1 209823320 209823320 G - LAMB3 Frame_Shift_Del p.Q58Sfs*7 0.15 TCGA-HF-7132-01 1 210536201 210536201 G A HHAT Missense_Mutation p.E34K 0.12 deleterious(0.02) unknown(0) TCGA-HF-7132-01 1 211192138 211192138 C T KCNH1 Missense_Mutation p.G340E 0.22 tolerated(0.28) benign(0.002) TCGA-HF-7132-01 1 214815734 214815734 T C CENPF Silent p.D1351D 0.12 TCGA-HF-7132-01 1 215785202 215785202 A G KCTD3 Missense_Mutation p.I501V 0.06 tolerated(0.52) benign(0.004) TCGA-HF-7132-01 1 220157578 220157578 T - EPRS Frame_Shift_Del p.E1021Kfs*17 0.12 TCGA-HF-7132-01 1 22016488 22016488 A G USP48 Silent p.P996P 0.15 TCGA-HF-7132-01 1 223396620 223396620 G A SUSD4 Missense_Mutation p.S472F 0.20 deleterious(0) probably_damaging(0.998) TCGA-HF-7132-01 1 2235472 2235472 G A SKI Missense_Mutation p.A469T 0.26 tolerated(0.52) benign(0.002) TCGA-HF-7132-01 1 226549136 226549136 G A PARP1 3'UTR 0.32 TCGA-HF-7132-01 1 22817980 22817981 - A ZBTB40 Frame_Shift_Ins p.L265Tfs*8 0.22 TCGA-HF-7132-01 1 228491466 228491466 C - OBSCN Frame_Shift_Del p.V4612Wfs*18 0.31 TCGA-HF-7132-01 1 228547976 228547976 C T OBSCN Intron 0.25 TCGA-HF-7132-01 1 228550291 228550291 C T OBSCN Nonsense_Mutation p.R7183* 0.11 TCGA-HF-7132-01 1 228584848 228584848 G A TRIM11 Missense_Mutation p.R252C 0.13 tolerated(0.13) benign(0.001) TCGA-HF-7132-01 1 22923860 22923860 C T EPHA8 Silent p.P607P 0.09 TCGA-HF-7132-01 1 230372444 230372444 C T GALNT2 Nonsense_Mutation p.R194* 0.07 TCGA-HF-7132-01 1 231067185 231067185 A G TTC13 Missense_Mutation p.C387R 0.22 deleterious(0) possibly_damaging(0.635) TCGA-HF-7132-01 1 231472660 231472660 C T EXOC8 Missense_Mutation p.E278K 0.12 deleterious(0.01) possibly_damaging(0.555) TCGA-HF-7132-01 1 231487256 231487256 A - SPRTN Frame_Shift_Del p.G222Afs*7 0.19 TCGA-HF-7132-01 1 23240030 23240030 G A EPHB2 Silent p.A977A 0.07 TCGA-HF-7132-01 1 233134179 233134179 C T PCNXL2 Missense_Mutation p.R1870Q 0.12 tolerated(0.17) benign(0.356) TCGA-HF-7132-01 1 235884029 235884029 A G LYST Silent p.P3164P 0.25 TCGA-HF-7132-01 1 236646695 236646695 G T EDARADD 3'Flank 0.08 TCGA-HF-7132-01 1 240256069 240256069 G A FMN2 Silent p.Q220Q 0.40 TCGA-HF-7132-01 1 243349656 243349656 G A CEP170 Missense_Mutation p.R393C 0.15 tolerated(0.12) benign(0.008) TCGA-HF-7132-01 1 243809301 243809301 C A AKT3 Missense_Mutation p.R108I 0.17 tolerated(0.21) benign(0.066) TCGA-HF-7132-01 1 244724287 244724287 T - C1orf101 Frame_Shift_Del p.F450Lfs*53 0.19 TCGA-HF-7132-01 1 245583006 245583006 G A KIF26B Silent p.E375E 0.21 TCGA-HF-7132-01 1 245912889 245912889 G A SMYD3 Silent p.C421C 0.18 TCGA-HF-7132-01 1 24685105 24685105 C T STPG1 Silent p.T311T 0.09 TCGA-HF-7132-01 1 248367150 248367150 C T OR2M3 Missense_Mutation p.R261W 0.20 deleterious(0.04) benign(0.005) TCGA-HF-7132-01 1 2520890 2520890 G A FAM213B 3'UTR 0.14 TCGA-HF-7132-01 1 26448379 26448381 TAT - PDIK1L In_Frame_Del p.Y114del 0.25 TCGA-HF-7132-01 1 27179250 27179250 G T ZDHHC18 Missense_Mutation p.G315C 0.18 deleterious(0) probably_damaging(1) TCGA-HF-7132-01 1 27189638 27189639 AC - SFN 5'UTR 0.18 TCGA-HF-7132-01 1 27426886 27426886 C A SLC9A1 Missense_Mutation p.S787I 0.12 tolerated(0.14) benign(0.073) TCGA-HF-7132-01 1 27876869 27876869 T - AHDC1 Frame_Shift_Del p.K586Nfs*37 0.13 TCGA-HF-7132-01 1 28905278 28905278 T C TRNAU1AP 3'Flank 0.16 TCGA-HF-7132-01 1 28920547 28920547 G - RAB42 Frame_Shift_Del p.G81Vfs*119 0.13 TCGA-HF-7132-01 1 29379779 29379779 C T EPB41 Silent p.D600D 0.08 TCGA-HF-7132-01 1 29585071 29585071 T C PTPRU Missense_Mutation p.V87A 0.11 deleterious(0.01) benign(0.142) TCGA-HF-7132-01 1 33354832 33354832 C T HPCA Silent p.D111D 0.14 TCGA-HF-7132-01 1 33998768 33998768 G T CSMD2 Silent p.P3207P 0.11 TCGA-HF-7132-01 1 34166207 34166207 C - CSMD2 Frame_Shift_Del p.V1175* 0.21 TCGA-HF-7132-01 1 36381048 36381048 C T AGO1 Missense_Mutation p.R645C 0.23 deleterious(0) probably_damaging(0.999) TCGA-HF-7132-01 1 36384702 36384702 G A AGO1 Missense_Mutation p.R771H 0.30 tolerated(0.28) probably_damaging(0.911) TCGA-HF-7132-01 1 38185131 38185131 A G EPHA10 Missense_Mutation p.V904A 0.08 deleterious(0.02) benign(0.002) TCGA-HF-7132-01 1 38197252 38197252 A G EPHA10 Silent p.G498G 0.12 TCGA-HF-7132-01 1 40557020 40557020 C T PPT1 Silent p.S138S 0.10 TCGA-HF-7132-01 1 40557753 40557753 T C PPT1 Missense_Mutation p.Y109C 0.17 deleterious(0) probably_damaging(1) TCGA-HF-7132-01 1 40702683 40702683 G A RLF Missense_Mutation p.R770H 0.22 tolerated(0.07) benign(0.01) TCGA-HF-7132-01 1 44035429 44035429 G A PTPRF Missense_Mutation p.R183H 0.19 deleterious(0) probably_damaging(1) TCGA-HF-7132-01 1 46159546 46159546 A - TMEM69 Frame_Shift_Del p.G240Dfs*30 0.21 TCGA-HF-7132-01 1 47364571 47364571 G A CYP4Z2P RNA 0.14 TCGA-HF-7132-01 1 52293532 52293532 C T NRD1 Silent p.Q360Q 0.11 TCGA-HF-7132-01 1 53729922 53729922 G A LRP8 Missense_Mutation p.T525I 0.15 deleterious(0) probably_damaging(0.962) TCGA-HF-7132-01 1 54649860 54649860 C T CYB5RL Missense_Mutation p.G172R 0.16 deleterious(0) probably_damaging(1) TCGA-HF-7132-01 1 55151960 55151960 C T MROH7 Silent p.S850S 0.16 TCGA-HF-7132-01 1 55272709 55272709 A G C1orf177 Missense_Mutation p.S49G 0.21 tolerated(0.42) benign(0.005) TCGA-HF-7132-01 1 55509619 55509619 G A PCSK9 Missense_Mutation p.R104H 0.13 tolerated(0.1) benign(0.06) TCGA-HF-7132-01 1 6196693 6196693 A - CHD5 Frame_Shift_Del p.F860Lfs*4 0.13 TCGA-HF-7132-01 1 6257785 6257785 T - RPL22 Frame_Shift_Del p.K15Rfs*5 0.30 TCGA-HF-7132-01 1 65138880 65138880 C - CACHD1 Frame_Shift_Del p.P800Rfs*24 0.14 TCGA-HF-7132-01 1 65272888 65272888 G A RAVER2 Splice_Site p.X458_splice 0.28 TCGA-HF-7132-01 1 65309880 65309880 G A JAK1 Missense_Mutation p.P757L 0.09 deleterious(0) probably_damaging(0.993) TCGA-HF-7132-01 1 66102113 66102113 G T LEPR Missense_Mutation p.E971D 0.19 tolerated(0.9) benign(0.001) TCGA-HF-7132-01 1 67685299 67685299 G T IL23R Nonsense_Mutation p.E281* 0.15 TCGA-HF-7132-01 1 68947138 68947138 C A DEPDC1 Missense_Mutation p.M640I 0.13 tolerated(0.7) benign(0.013) TCGA-HF-7132-01 1 68948470 68948470 A T DEPDC1 Missense_Mutation p.S341T 0.17 deleterious(0) probably_damaging(0.997) TCGA-HF-7132-01 1 71318470 71318470 A C PTGER3 3'UTR 0.15 TCGA-HF-7132-01 1 71512610 71512610 G T PTGER3 Missense_Mutation p.N217K 0.20 tolerated(0.22) probably_damaging(1) TCGA-HF-7132-01 1 74507493 74507493 T - LRRIQ3 Frame_Shift_Del p.K374Nfs*31 0.10 TCGA-HF-7132-01 1 77620260 77620260 C T PIGK Missense_Mutation p.R287H 0.13 deleterious(0) probably_damaging(0.998) TCGA-HF-7132-01 1 7792623 7792623 C T CAMTA1 Silent p.G1010G 0.19 TCGA-HF-7132-01 1 78098731 78098731 A T ZZZ3 Missense_Mutation p.N103K 0.22 deleterious(0.03) benign(0.11) TCGA-HF-7132-01 1 78392424 78392424 A - NEXN Frame_Shift_Del p.E240Nfs*8 0.27 TCGA-HF-7132-01 1 79357234 79357234 A - ELTD1 Frame_Shift_Del p.L662Yfs*28 0.18 TCGA-HF-7132-01 1 84408217 84408217 T - TTLL7 Frame_Shift_Del p.I218Yfs*24 0.11 TCGA-HF-7132-01 1 85546976 85546976 C T WDR63 Nonsense_Mutation p.R55* 0.11 TCGA-HF-7132-01 1 85550330 85550330 C T WDR63 Silent p.G164G 0.09 TCGA-HF-7132-01 1 86964339 86964339 C T CLCA1 Missense_Mutation p.S733L 0.16 tolerated(0.06) benign(0.027) TCGA-HF-7132-01 1 892322 892322 A C NOC2L Silent p.S146S 0.17 TCGA-HF-7132-01 1 91851225 91851225 T C HFM1 Missense_Mutation p.T221A 0.17 tolerated_low_confidence(0.41) benign(0.021) TCGA-HF-7132-01 1 9211787 9211787 G A MIR34A RNA 0.04 TCGA-HF-7132-01 1 92174326 92174326 G A TGFBR3 Silent p.D727D 0.22 TCGA-HF-7132-01 1 94140238 94140238 C T BCAR3 Silent p.S83S 0.10 TCGA-HF-7132-01 1 9661216 9661216 C T TMEM201 Silent p.L220L 0.21 TCGA-HF-7132-01 1 9793524 9793524 G A CLSTN1 Missense_Mutation p.R788W 0.17 deleterious(0) probably_damaging(1) TCGA-HF-7132-01 20 10273591 10273591 G T SNAP25 Intron 0.24 TCGA-HF-7132-01 20 17208071 17208071 G - PCSK2 Frame_Shift_Del p.G42Efs*54 0.11 TCGA-HF-7132-01 20 18143375 18143375 C T CSRP2BP Missense_Mutation p.P486L 0.27 tolerated(0.09) benign(0.217) TCGA-HF-7132-01 20 18143544 18143544 G A CSRP2BP Silent p.T542T 0.12 TCGA-HF-7132-01 20 1960948 1960948 C T PDYN 3'UTR 0.25 TCGA-HF-7132-01 20 21687221 21687221 C T PAX1 Silent p.H144H 0.10 TCGA-HF-7132-01 20 24988454 24988454 C T ACSS1 Missense_Mutation p.A672T 0.19 tolerated(0.33) benign(0.001) TCGA-HF-7132-01 20 25004177 25004177 G A ACSS1 Silent p.T244T 0.18 TCGA-HF-7132-01 20 3003439 3003439 G A PTPRA Missense_Mutation p.R478Q 0.25 deleterious(0) possibly_damaging(0.797) TCGA-HF-7132-01 20 3209181 3209181 C T SLC4A11 Missense_Mutation p.V832M 0.17 tolerated(0.92) benign(0.039) TCGA-HF-7132-01 20 32248127 32248127 T C NECAB3 Silent p.Q154Q 0.19 TCGA-HF-7132-01 20 33245009 33245009 G A PIGU Missense_Mutation p.P57L 0.09 deleterious(0) probably_damaging(1) TCGA-HF-7132-01 20 33328372 33328372 C T NCOA6 Silent p.P1896P 0.19 TCGA-HF-7132-01 20 33593526 33593526 G A TRPC4AP Silent p.D636D 0.18 TCGA-HF-7132-01 20 34241632 34241632 T C RBM12 Missense_Mutation p.D538G 0.17 tolerated(0.33) benign(0.056) TCGA-HF-7132-01 20 35672624 35672624 C A RBL1 Missense_Mutation p.E545D 0.29 tolerated(0.88) benign(0.098) TCGA-HF-7132-01 20 3669825 3669825 C T SIGLEC1 Missense_Mutation p.A1683T 0.15 tolerated(0.88) benign(0.007) TCGA-HF-7132-01 20 36766620 36766620 C T TGM2 Missense_Mutation p.V504I 0.18 tolerated(0.18) benign(0.008) TCGA-HF-7132-01 20 368740 368740 G A TRIB3 Missense_Mutation p.R29H 0.16 tolerated(0.55) benign(0) TCGA-HF-7132-01 20 3725645 3725645 C T HSPA12B Silent p.T121T 0.26 TCGA-HF-7132-01 20 37547109 37547109 C A PPP1R16B Missense_Mutation p.L502M 0.12 tolerated(0.1) benign(0.196) TCGA-HF-7132-01 20 39317281 39317281 C T MAFB Silent p.S70S 0.13 TCGA-HF-7132-01 20 411090 411090 G A RBCK1 3'UTR 0.20 TCGA-HF-7132-01 20 43384955 43384955 C A RIMS4 Missense_Mutation p.K211N 0.25 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-HF-7132-01 20 43530295 43530295 G A YWHAB Missense_Mutation p.E41K 0.16 deleterious_low_confidence(0) benign(0.295) TCGA-HF-7132-01 20 43933003 43933003 C T MATN4 Missense_Mutation p.A170T 0.20 probably_damaging(0.999) TCGA-HF-7132-01 20 43945395 43945395 C T RBPJL Silent p.R450R 0.20 TCGA-HF-7132-01 20 44642001 44642001 C T MMP9 Missense_Mutation p.R480C 0.20 deleterious(0.05) possibly_damaging(0.536) TCGA-HF-7132-01 20 45912325 45912325 C T ZMYND8 Missense_Mutation p.C291Y 0.08 deleterious(0) possibly_damaging(0.891) TCGA-HF-7132-01 20 47317313 47317313 C T PREX1 Missense_Mutation p.V299I 0.22 tolerated(0.12) benign(0.163) TCGA-HF-7132-01 20 47732351 47732351 C A STAU1 Missense_Mutation p.E562D 0.18 tolerated_low_confidence(0.05) benign(0.011) TCGA-HF-7132-01 20 47887640 47887640 G A ZNFX1 Nonsense_Mutation p.R237* 0.24 TCGA-HF-7132-01 20 53208299 53208299 G A DOK5 Missense_Mutation p.R185Q 0.28 deleterious(0.03) probably_damaging(0.992) TCGA-HF-7132-01 20 55027043 55027043 G A CASS4 Missense_Mutation p.A271T 0.07 tolerated(0.57) benign(0.01) TCGA-HF-7132-01 20 57430058 57430058 G A GNAS Missense_Mutation p.E580K 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.541) TCGA-HF-7132-01 20 57480483 57480483 C T GNAS Missense_Mutation p.R803C 0.16 deleterious(0.01) benign(0.287) TCGA-HF-7132-01 20 58519319 58519319 T G FAM217B Silent p.P107P 0.13 TCGA-HF-7132-01 20 58559743 58559743 T C CDH26 Silent p.T197T 0.29 TCGA-HF-7132-01 20 5963723 5963723 A G MCM8 Missense_Mutation p.S549G 0.17 deleterious(0) benign(0.347) TCGA-HF-7132-01 20 60551303 60551303 A G TAF4 Missense_Mutation p.L1060P 0.14 probably_damaging(0.998) TCGA-HF-7132-01 20 60772933 60772933 G A MTG2 Silent p.S126S 0.18 TCGA-HF-7132-01 20 61944226 61944226 G A COL20A1 Silent p.P672P 0.38 TCGA-HF-7132-01 20 62076149 62076149 C T KCNQ2 Missense_Mutation p.A185T 0.16 deleterious(0.01) possibly_damaging(0.895) TCGA-HF-7132-01 20 62366010 62366010 C T ZGPAT Silent p.D295D 0.19 TCGA-HF-7132-01 20 62738071 62738071 G A NPBWR2 Silent p.S38S 0.26 TCGA-HF-7132-01 20 7963217 7963217 G A TMX4 Missense_Mutation p.A244V 0.21 tolerated(0.16) benign(0.026) TCGA-HF-7132-01 21 19701570 19701570 G A TMPRSS15 Missense_Mutation p.L566F 0.12 deleterious(0.01) probably_damaging(1) TCGA-HF-7132-01 21 27423456 27423456 G A APP Silent p.C174C 0.16 TCGA-HF-7132-01 21 28306952 28306952 A G ADAMTS5 Missense_Mutation p.C508R 0.12 deleterious(0) possibly_damaging(0.903) TCGA-HF-7132-01 21 31709452 31709452 C T KRTAP27-1 Missense_Mutation p.V179I 0.12 tolerated(0.18) possibly_damaging(0.575) TCGA-HF-7132-01 21 32502560 32502560 G A TIAM1 Missense_Mutation p.A1339V 0.09 deleterious(0) possibly_damaging(0.876) TCGA-HF-7132-01 21 33065696 33065696 C T SCAF4 Missense_Mutation p.R475Q 0.15 benign(0.004) TCGA-HF-7132-01 21 37417960 37417960 G A SETD4 Missense_Mutation p.R216W 0.13 tolerated(0.08) benign(0.001) TCGA-HF-7132-01 21 37602959 37602959 C T DOPEY2 Missense_Mutation p.T626M 0.24 tolerated(0.3) benign(0.065) TCGA-HF-7132-01 21 38862489 38862489 G A DYRK1A Missense_Mutation p.R226H 0.14 deleterious(0.03) benign(0.24) TCGA-HF-7132-01 21 38862711 38862711 G A DYRK1A Missense_Mutation p.R300H 0.13 deleterious(0.04) probably_damaging(0.993) TCGA-HF-7132-01 21 43411084 43411084 T - ZBTB21 Frame_Shift_Del p.R1041Dfs*56 0.22 TCGA-HF-7132-01 21 43413187 43413187 G - ZBTB21 Frame_Shift_Del p.L340Sfs*18 0.14 TCGA-HF-7132-01 21 44838242 44838242 C T SIK1 Missense_Mutation p.A548T 0.19 tolerated(0.21) probably_damaging(0.993) TCGA-HF-7132-01 21 45103227 45103227 C A RRP1B Silent p.T288T 0.15 TCGA-HF-7132-01 21 45550604 45550604 A G PWP2 Missense_Mutation p.H904R 0.12 tolerated(0.17) benign(0) TCGA-HF-7132-01 21 45959433 45959433 G A KRTAP10-1 Missense_Mutation p.P201S 0.10 deleterious(0.03) unknown(0) TCGA-HF-7132-01 21 45994702 45994702 G A KRTAP10-4 Missense_Mutation p.R356K 0.15 tolerated(0.39) unknown(0) TCGA-HF-7132-01 21 47536721 47536721 G T COL6A2 Missense_Mutation p.G331V 0.18 deleterious(0) probably_damaging(0.999) TCGA-HF-7132-01 21 47626622 47626623 - C LSS Frame_Shift_Ins p.H510Afs*18 0.11 TCGA-HF-7132-01 21 47836279 47836279 G A PCNT Silent p.A2149A 0.26 TCGA-HF-7132-01 22 16287790 16287790 G A POTEH Silent p.F32F 0.40 TCGA-HF-7132-01 22 18273780 18273780 T C MICAL3 Silent p.E1936E 0.16 TCGA-HF-7132-01 22 19052574 19052574 A G DGCR2 Missense_Mutation p.L112P 0.23 tolerated(0.19) probably_damaging(0.999) TCGA-HF-7132-01 22 19707945 19707945 C T SEPT5 Silent p.C155C 0.06 TCGA-HF-7132-01 22 20073403 20073403 C T DGCR8 5'UTR 0.12 TCGA-HF-7132-01 22 20097586 20097586 G A DGCR8 Silent p.A759A 0.20 TCGA-HF-7132-01 22 20100532 20100532 T C TRMT2A Splice_Site p.X517_splice 0.24 TCGA-HF-7132-01 22 20230512 20230512 C T RTN4R Silent p.L48L 0.19 TCGA-HF-7132-01 22 20760918 20760918 A G ZNF74 Missense_Mutation p.E532G 0.06 deleterious(0) possibly_damaging(0.855) TCGA-HF-7132-01 22 20936976 20936976 C - MED15 Frame_Shift_Del p.Q453Sfs*41 0.22 TCGA-HF-7132-01 22 20975877 20975877 C T SMPD4P1 RNA 0.16 TCGA-HF-7132-01 22 21159385 21159385 C T PI4KA Missense_Mutation p.E413K 0.09 deleterious(0.04) probably_damaging(0.926) TCGA-HF-7132-01 22 21384035 21384035 C - SLC7A4 Frame_Shift_Del p.A530Lfs*18 0.13 TCGA-HF-7132-01 22 22517058 22517058 T C IGLV4-60 Missense_Mutation p.W116R 0.12 deleterious(0.03) possibly_damaging(0.615) TCGA-HF-7132-01 22 22843731 22843731 T - ZNF280B 5'UTR 0.19 TCGA-HF-7132-01 22 24560440 24560440 G A CABIN1 Missense_Mutation p.V1607M 0.14 deleterious(0) probably_damaging(0.997) TCGA-HF-7132-01 22 25627692 25627692 C T CRYBB2 Missense_Mutation p.R191C 0.10 deleterious(0) probably_damaging(0.989) TCGA-HF-7132-01 22 25750563 25750563 C A LRP5L Nonsense_Mutation p.G219* 0.27 TCGA-HF-7132-01 22 26888314 26888314 C T TFIP11 Missense_Mutation p.A727T 0.16 tolerated(0.06) probably_damaging(0.919) TCGA-HF-7132-01 22 28194071 28194071 C T MN1 Missense_Mutation p.G821S 0.31 probably_damaging(1) TCGA-HF-7132-01 22 29747754 29747754 G A AP1B1 Silent p.Y333Y 0.25 TCGA-HF-7132-01 22 31011453 31011453 C T TCN2 Missense_Mutation p.A249V 0.10 deleterious(0) probably_damaging(0.995) TCGA-HF-7132-01 22 32628914 32628914 C T SLC5A4 Silent p.P331P 0.29 TCGA-HF-7132-01 22 35680012 35680012 A G HMGXB4 Missense_Mutation p.I425V 0.18 tolerated(0.1) benign(0.306) TCGA-HF-7132-01 22 35743121 35743121 G - TOM1 Frame_Shift_Del p.P470Rfs*84 0.15 TCGA-HF-7132-01 22 37334428 37334428 C T CSF2RB Missense_Mutation p.P860S 0.24 deleterious(0.05) possibly_damaging(0.642) TCGA-HF-7132-01 22 37603287 37603287 G A SSTR3 Missense_Mutation p.R186C 0.20 deleterious(0.02) possibly_damaging(0.846) TCGA-HF-7132-01 22 37769212 37769212 G A ELFN2 Missense_Mutation p.A788V 0.24 deleterious(0) probably_damaging(0.991) TCGA-HF-7132-01 22 37769986 37769986 G A ELFN2 Missense_Mutation p.S530L 0.12 deleterious(0) probably_damaging(0.999) TCGA-HF-7132-01 22 38028140 38028140 C T GGA1 Missense_Mutation p.R556C 0.20 deleterious(0.03) benign(0.118) TCGA-HF-7132-01 22 38610474 38610474 G A MAFF Silent p.A28A 0.20 TCGA-HF-7132-01 22 38617444 38617444 G A TMEM184B 3'UTR 0.17 TCGA-HF-7132-01 22 38690172 38690172 G A CSNK1E Silent p.N387N 0.17 TCGA-HF-7132-01 22 39135767 39135767 A G SUN2 Missense_Mutation p.L534P 0.12 tolerated(0.06) benign(0.397) TCGA-HF-7132-01 22 41513540 41513540 G A EP300 Silent p.T148T 0.15 TCGA-HF-7132-01 22 41790188 41790188 C T TEF Silent p.A188A 0.15 TCGA-HF-7132-01 22 43289531 43289531 C T PACSIN2 Missense_Mutation p.R50H 0.14 deleterious(0) probably_damaging(0.951) TCGA-HF-7132-01 22 43599965 43599965 C T SCUBE1 3'UTR 0.18 TCGA-HF-7132-01 22 45580548 45580548 C T NUP50 3'UTR 0.26 TCGA-HF-7132-01 22 45758880 45758880 C T SMC1B Missense_Mutation p.R816Q 0.21 deleterious(0.02) probably_damaging(0.969) TCGA-HF-7132-01 22 46768944 46768944 G A CELSR1 Missense_Mutation p.T2532I 0.41 deleterious(0) probably_damaging(0.964) TCGA-HF-7132-01 22 50552165 50552165 C T MOV10L1 Missense_Mutation p.H278Y 0.14 deleterious(0.01) benign(0.093) TCGA-HF-7132-01 22 50636423 50636423 C G TRABD Missense_Mutation p.D281E 0.13 tolerated(0.75) benign(0.004) TCGA-HF-7132-01 22 50658094 50658094 G T TUBGCP6 Missense_Mutation p.P1432T 0.20 deleterious(0.03) probably_damaging(0.976) TCGA-HF-7132-01 2 101606731 101606731 T C NPAS2 Missense_Mutation p.M614T 0.19 tolerated(0.17) benign(0.035) TCGA-HF-7132-01 2 102959496 102959497 - A IL1RL1 Frame_Shift_Ins p.N230Kfs*25 0.13 TCGA-HF-7132-01 2 103340244 103340244 G A MFSD9 Silent p.P184P 0.05 TCGA-HF-7132-01 2 105859047 105859047 G A GPR45 Silent p.A244A 0.25 TCGA-HF-7132-01 2 107460323 107460323 C A ST6GAL2 Missense_Mutation p.E37D 0.16 benign(0.014) TCGA-HF-7132-01 2 109347310 109347310 A - RANBP2 Frame_Shift_Del p.N75Tfs*15 0.19 TCGA-HF-7132-01 2 11332391 11332391 G T ROCK2 Missense_Mutation p.P1349H 0.18 deleterious(0.01) probably_damaging(0.99) TCGA-HF-7132-01 2 11367448 11367448 C - ROCK2 Frame_Shift_Del p.G267Vfs*14 0.18 TCGA-HF-7132-01 2 114257061 114257061 C T FOXD4L1 Silent p.G76G 0.33 TCGA-HF-7132-01 2 11733195 11733195 G A GREB1 Missense_Mutation p.V547M 0.19 deleterious(0) possibly_damaging(0.877) TCGA-HF-7132-01 2 118864685 118864685 C A INSIG2 Missense_Mutation p.L186I 0.15 deleterious(0.03) possibly_damaging(0.545) TCGA-HF-7132-01 2 119752091 119752091 G A MARCO Missense_Mutation p.V520I 0.21 tolerated_low_confidence(0.84) unknown(0) TCGA-HF-7132-01 2 130738155 130738155 G T RAB6C Missense_Mutation p.R156M 0.19 deleterious_low_confidence(0) possibly_damaging(0.71) TCGA-HF-7132-01 2 130912733 130912733 C T SMPD4 Silent p.A502A 0.20 TCGA-HF-7132-01 2 133540012 133540012 C T NCKAP5 Missense_Mutation p.A1458T 0.14 tolerated(0.57) benign(0.05) TCGA-HF-7132-01 2 135076289 135076289 T - MGAT5 Frame_Shift_Del p.F186Lfs*43 0.20 TCGA-HF-7132-01 2 141272227 141272227 A G LRP1B Missense_Mutation p.I2755T 0.15 benign(0.415) TCGA-HF-7132-01 2 141751637 141751638 AC - LRP1B Frame_Shift_Del p.C857Yfs*8 0.18 TCGA-HF-7132-01 2 145162430 145162430 G A ZEB2 Missense_Mutation p.P189S 0.19 deleterious(0) possibly_damaging(0.831) TCGA-HF-7132-01 2 148657041 148657041 A - ACVR2A Frame_Shift_Del p.D96Tfs*54 0.21 TCGA-HF-7132-01 2 152321262 152321263 AA - RIF1 Frame_Shift_Del p.K1744Vfs*11 0.15 TCGA-HF-7132-01 2 155711593 155711593 A - KCNJ3 Frame_Shift_Del p.A427Pfs*9 0.20 TCGA-HF-7132-01 2 160042391 160042391 T C TANC1 Missense_Mutation p.L867P 0.20 deleterious(0.01) probably_damaging(0.98) TCGA-HF-7132-01 2 163250908 163250908 C T KCNH7 Missense_Mutation p.G901R 0.11 tolerated(0.51) benign(0.001) TCGA-HF-7132-01 2 1653138 1653138 G A PXDN Missense_Mutation p.T805M 0.23 deleterious(0.03) probably_damaging(0.986) TCGA-HF-7132-01 2 166514422 166514422 C T CSRNP3 Silent p.S100S 0.22 TCGA-HF-7132-01 2 166903335 166903335 T A SCN1A Missense_Mutation p.E441V 0.17 deleterious(0) probably_damaging(0.996) TCGA-HF-7132-01 2 167288977 167288977 C A SCN7A Nonsense_Mutation p.E815* 0.14 TCGA-HF-7132-01 2 168105800 168105800 C T XIRP2 Missense_Mutation p.S2633L 0.21 benign(0.006) TCGA-HF-7132-01 2 170097872 170097872 G A LRP2 Missense_Mutation p.T1224I 0.19 probably_damaging(0.955) TCGA-HF-7132-01 2 170850862 170850862 C T UBR3 Missense_Mutation p.P1272S 0.13 tolerated(0.5) benign(0.01) TCGA-HF-7132-01 2 170865361 170865361 A - UBR3 Frame_Shift_Del p.N1428Ifs*32 0.15 TCGA-HF-7132-01 2 171258099 171258099 C T MYO3B Missense_Mutation p.A676V 0.22 deleterious(0) probably_damaging(0.994) TCGA-HF-7132-01 2 172965288 172965288 C T DLX2 Missense_Mutation p.A324T 0.20 tolerated_low_confidence(0.07) possibly_damaging(0.821) TCGA-HF-7132-01 2 177036642 177036642 C T HOXD3 Silent p.A313A 0.26 TCGA-HF-7132-01 2 177036654 177036654 G A HOXD3 Silent p.A317A 0.14 TCGA-HF-7132-01 2 179413214 179413214 G A TTN Nonsense_Mutation p.R31047* 0.11 TCGA-HF-7132-01 2 179447201 179447201 G T TTN Missense_Mutation p.D21994E 0.17 TCGA-HF-7132-01 2 179481674 179481674 G A TTN Missense_Mutation p.T15981M 0.21 TCGA-HF-7132-01 2 179501201 179501201 G A TTN Silent p.S13751S 0.14 TCGA-HF-7132-01 2 186672981 186672982 - A FSIP2 Frame_Shift_Ins p.I6407Nfs*10 0.11 TCGA-HF-7132-01 2 191301852 191301852 G T MFSD6 Missense_Mutation p.R366M 0.09 deleterious(0) benign(0.065) TCGA-HF-7132-01 2 192228887 192228888 - A MYO1B Frame_Shift_Ins p.E308Rfs*4 0.13 TCGA-HF-7132-01 2 192257883 192257883 C T MYO1B Missense_Mutation p.R721C 0.15 deleterious(0.03) probably_damaging(1) TCGA-HF-7132-01 2 192701367 192701367 G A SDPR Missense_Mutation p.P187L 0.29 tolerated(0.32) benign(0.003) TCGA-HF-7132-01 2 196912181 196912182 - G DNAH7 Frame_Shift_Ins p.H98Pfs*4 0.18 TCGA-HF-7132-01 2 201436992 201436992 A - SGOL2 Frame_Shift_Del p.G644Vfs*18 0.24 TCGA-HF-7132-01 2 202265809 202265809 T C TRAK2 Missense_Mutation p.T99A 0.16 tolerated(1) benign(0.204) TCGA-HF-7132-01 2 202339376 202339376 G A STRADB Missense_Mutation p.V108M 0.17 tolerated(0.15) benign(0.292) TCGA-HF-7132-01 2 206659485 206659485 C T NRP2 Silent p.Y833Y 0.04 TCGA-HF-7132-01 2 207559536 207559536 C A DYTN Missense_Mutation p.S262I 0.17 tolerated(0.08) benign(0.2) TCGA-HF-7132-01 2 210882219 210882219 T C RPE Missense_Mutation p.F167S 0.17 deleterious(0.01) possibly_damaging(0.547) TCGA-HF-7132-01 2 214354794 214354794 C G SPAG16 Silent p.L350L 0.08 TCGA-HF-7132-01 2 214354804 214354804 C A SPAG16 Missense_Mutation p.P354T 0.09 deleterious(0.01) benign(0.438) TCGA-HF-7132-01 2 216226286 216226286 G A FN1 Nonsense_Mutation p.R2476* 0.13 TCGA-HF-7132-01 2 217525350 217525350 C T IGFBP2 Silent p.G171G 0.09 TCGA-HF-7132-01 2 219127871 219127871 C T GPBAR1 Missense_Mutation p.P142S 0.11 deleterious(0) probably_damaging(0.999) TCGA-HF-7132-01 2 219328045 219328045 G A USP37 Silent p.T837T 0.14 TCGA-HF-7132-01 2 219875635 219875635 A T CCDC108 Missense_Mutation p.N1347K 0.21 deleterious(0) probably_damaging(0.969) TCGA-HF-7132-01 2 220164967 220164967 C T PTPRN Silent p.P392P 0.09 TCGA-HF-7132-01 2 220283179 220283179 G A DES 5'UTR 0.42 TCGA-HF-7132-01 2 220493266 220493266 G A SLC4A3 Missense_Mutation p.R64H 0.15 tolerated_low_confidence(0.07) probably_damaging(0.997) TCGA-HF-7132-01 2 223773616 223773616 T - ACSL3 Frame_Shift_Del p.F44Sfs*17 0.15 TCGA-HF-7132-01 2 223918058 223918058 C A KCNE4 Silent p.S170S 0.26 TCGA-HF-7132-01 2 224863030 224863030 T A SERPINE2 Nonsense_Mutation p.K109* 0.22 TCGA-HF-7132-01 2 226446979 226446979 C T NYAP2 Silent p.D282D 0.21 TCGA-HF-7132-01 2 227660889 227660889 C T IRS1 Missense_Mutation p.A856T 0.11 tolerated(0.44) benign(0.002) TCGA-HF-7132-01 2 228158020 228158020 T C COL4A3 Silent p.S1108S 0.10 TCGA-HF-7132-01 2 230223322 230223322 G A DNER Silent p.I716I 0.20 TCGA-HF-7132-01 2 230231681 230231681 C A DNER Missense_Mutation p.Q670H 0.17 deleterious(0) probably_damaging(0.935) TCGA-HF-7132-01 2 233001390 233001390 G A DIS3L2 Missense_Mutation p.R304H 0.14 deleterious(0.04) benign(0.068) TCGA-HF-7132-01 2 233243925 233243925 C T ALPP Missense_Mutation p.T70M 0.11 deleterious(0) probably_damaging(0.999) TCGA-HF-7132-01 2 233246265 233246265 C T ALPP Silent p.G456G 0.19 TCGA-HF-7132-01 2 234846108 234846108 C T TRPM8 Silent p.D101D 0.15 TCGA-HF-7132-01 2 238280909 238280909 C T COL6A3 Missense_Mutation p.V1251I 0.15 benign(0.063) TCGA-HF-7132-01 2 238820427 238820427 C T RAMP1 3'UTR 0.36 TCGA-HF-7132-01 2 239040408 239040408 G - ESPNL 3'UTR 0.15 TCGA-HF-7132-01 2 239975163 239975163 C T HDAC4 Missense_Mutation p.E1070K 0.06 tolerated(0.07) unknown(0) TCGA-HF-7132-01 2 242203992 242203992 G A HDLBP Silent p.S35S 0.27 TCGA-HF-7132-01 2 24484521 24484521 T - ITSN2 Frame_Shift_Del p.M816Cfs*41 0.27 TCGA-HF-7132-01 2 24930502 24930502 G T NCOA1 Silent p.V721V 0.28 TCGA-HF-7132-01 2 25013338 25013338 C T PTRHD1 Missense_Mutation p.R122Q 0.13 tolerated(0.05) possibly_damaging(0.876) TCGA-HF-7132-01 2 25463308 25463308 G A DNMT3A Missense_Mutation p.R729W 0.16 deleterious(0) probably_damaging(0.999) TCGA-HF-7132-01 2 25611181 25611181 C T DTNB Missense_Mutation p.R542Q 0.28 tolerated(0.25) benign(0.043) TCGA-HF-7132-01 2 26350067 26350067 G A RAB10 Missense_Mutation p.D128N 0.19 deleterious(0.04) benign(0.053) TCGA-HF-7132-01 2 26700603 26700603 G A OTOF Silent p.N743N 0.11 TCGA-HF-7132-01 2 27306220 27306220 G A EMILIN1 Missense_Mutation p.R594H 0.26 possibly_damaging(0.814) TCGA-HF-7132-01 2 27454356 27454356 C T CAD Missense_Mutation p.R770C 0.21 deleterious(0) probably_damaging(0.998) TCGA-HF-7132-01 2 27552352 27552352 G - GTF3C2 Frame_Shift_Del p.L591Cfs*11 0.11 TCGA-HF-7132-01 2 29150002 29150002 T C WDR43 Intron 0.16 TCGA-HF-7132-01 2 29404460 29404460 A G CLIP4 Missense_Mutation p.S607G 0.21 deleterious(0.03) probably_damaging(0.979) TCGA-HF-7132-01 2 32820100 32820101 - A BIRC6 Frame_Shift_Ins p.L4504Tfs*3 0.17 TCGA-HF-7132-01 2 33810391 33810391 C T FAM98A Missense_Mutation p.G337R 0.15 tolerated(0.28) unknown(0) TCGA-HF-7132-01 2 3483101 3483101 G A TRAPPC12 Missense_Mutation p.V693M 0.18 deleterious(0) benign(0.274) TCGA-HF-7132-01 2 37113870 37113870 T C STRN Missense_Mutation p.K344R 0.14 tolerated(0.17) possibly_damaging(0.614) TCGA-HF-7132-01 2 43973034 43973034 G T PLEKHH2 Missense_Mutation p.Q1195H 0.24 deleterious(0) possibly_damaging(0.541) TCGA-HF-7132-01 2 44053638 44053638 T C ABCG5 Silent p.P219P 0.12 TCGA-HF-7132-01 2 44540984 44540984 G A SLC3A1 Missense_Mutation p.R504H 0.14 tolerated(0.57) benign(0.017) TCGA-HF-7132-01 2 45235695 45235695 C A SIX2 Missense_Mutation p.K185N 0.25 deleterious(0.01) possibly_damaging(0.786) TCGA-HF-7132-01 2 47233862 47233862 A G TTC7A Missense_Mutation p.K429R 0.18 deleterious(0.05) probably_damaging(0.971) TCGA-HF-7132-01 2 47251450 47251450 C T TTC7A Silent p.D531D 0.17 TCGA-HF-7132-01 2 51255042 51255042 G A NRXN1 Missense_Mutation p.R124C 0.23 deleterious(0.03) possibly_damaging(0.858) TCGA-HF-7132-01 2 54856880 54856880 A G SPTBN1 Missense_Mutation p.Q870R 0.09 tolerated(0.24) possibly_damaging(0.487) TCGA-HF-7132-01 2 61441427 61441427 C T USP34 Missense_Mutation p.R2817H 0.14 deleterious(0.02) possibly_damaging(0.835) TCGA-HF-7132-01 2 64800123 64800123 C T AFTPH Missense_Mutation p.A772V 0.18 deleterious(0) probably_damaging(0.997) TCGA-HF-7132-01 2 65571870 65571870 G A SPRED2 Nonsense_Mutation p.R63* 0.15 TCGA-HF-7132-01 2 69207871 69207872 - T GKN1 Frame_Shift_Ins p.Y175Lfs*36 0.14 TCGA-HF-7132-01 2 71351378 71351378 C T MCEE Silent p.L112L 0.14 TCGA-HF-7132-01 2 7179899 7179899 G A RNF144A 3'UTR 0.26 TCGA-HF-7132-01 2 74682557 74682557 C T INO80B Missense_Mutation p.A28V 0.15 tolerated_low_confidence(0.05) benign(0.001) TCGA-HF-7132-01 2 74688756 74688756 G A MOGS Silent p.R720R 0.15 TCGA-HF-7132-01 2 74789519 74789520 - C M1AP Frame_Shift_Ins p.E369Gfs*48 0.12 TCGA-HF-7132-01 2 75720591 75720592 CT - EVA1A Frame_Shift_Del p.S77Qfs*12 0.17 TCGA-HF-7132-01 2 80136799 80136799 T C CTNNA2 Missense_Mutation p.I311T 0.17 deleterious(0) possibly_damaging(0.877) TCGA-HF-7132-01 2 80530698 80530698 C T LRRTM1 Missense_Mutation p.G83S 0.12 tolerated(0.4) probably_damaging(0.998) TCGA-HF-7132-01 2 80530714 80530714 G T LRRTM1 Silent p.L77L 0.22 TCGA-HF-7132-01 2 85554262 85554262 G A TGOLN2 Missense_Mutation p.A198V 0.18 tolerated(0.22) probably_damaging(0.972) TCGA-HF-7132-01 2 85622008 85622008 G A CAPG 3'UTR 0.26 TCGA-HF-7132-01 2 86439517 86439517 T A MRPL35 3'UTR 0.19 TCGA-HF-7132-01 2 90060893 90060893 G A IGKV6D-21 Silent p.R80R 0.26 TCGA-HF-7132-01 2 9098635 9098636 - A MBOAT2 Frame_Shift_Ins p.C71Lfs*52 0.12 TCGA-HF-7132-01 2 95713804 95713804 C G MAL Missense_Mutation p.A65G 0.11 tolerated(0.57) benign(0.002) TCGA-HF-7132-01 2 9642351 9642353 CTT - ADAM17 In_Frame_Del p.K533del 0.21 TCGA-HF-7132-01 2 96943574 96943574 G A SNRNP200 Nonsense_Mutation p.Q1909* 0.16 TCGA-HF-7132-01 2 9728377 9728377 G A YWHAQ Missense_Mutation p.R167C 0.30 tolerated_low_confidence(0.07) benign(0.034) TCGA-HF-7132-01 3 101540395 101540395 C T NXPE3 Missense_Mutation p.A426V 0.15 deleterious(0) probably_damaging(0.998) TCGA-HF-7132-01 3 108363261 108363261 G A DZIP3 Silent p.Q464Q 0.17 TCGA-HF-7132-01 3 109028172 109028172 G T DPPA2 Missense_Mutation p.L63I 0.19 tolerated(0.19) possibly_damaging(0.53) TCGA-HF-7132-01 3 114069728 114069728 C T ZBTB20 Silent p.A399A 0.07 TCGA-HF-7132-01 3 119236144 119236144 A G TIMMDC1 Missense_Mutation p.E230G 0.15 deleterious(0) benign(0.166) TCGA-HF-7132-01 3 119463003 119463003 A - MAATS1 Frame_Shift_Del p.K622Nfs*22 0.15 TCGA-HF-7132-01 3 121187159 121187159 T C POLQ Missense_Mutation p.M2280V 0.18 tolerated(0.8) benign(0.001) TCGA-HF-7132-01 3 121416064 121416064 C T GOLGB1 Missense_Mutation p.M1102I 0.13 benign(0.03) TCGA-HF-7132-01 3 121641106 121641106 C T SLC15A2 Missense_Mutation p.P246L 0.13 deleterious(0.03) probably_damaging(0.968) TCGA-HF-7132-01 3 121973139 121973139 G - CASR Frame_Shift_Del p.L37Sfs*8 0.10 TCGA-HF-7132-01 3 123333139 123333139 C T MYLK Missense_Mutation p.R1853H 0.25 deleterious(0) probably_damaging(0.999) TCGA-HF-7132-01 3 124201667 124201667 C T KALRN Missense_Mutation p.R1400W 0.20 deleterious(0) probably_damaging(0.973) TCGA-HF-7132-01 3 124485176 124485176 C A ITGB5 Missense_Mutation p.E678D 0.14 tolerated(0.87) benign(0.013) TCGA-HF-7132-01 3 124731613 124731613 T C HEG1 Missense_Mutation p.Y937C 0.18 tolerated(0.06) possibly_damaging(0.706) TCGA-HF-7132-01 3 126062715 126062715 G A KLF15 Missense_Mutation p.S369L 0.24 deleterious(0.02) possibly_damaging(0.456) TCGA-HF-7132-01 3 12633207 12633207 C A RAF1 Missense_Mutation p.R398L 0.21 deleterious(0) probably_damaging(0.932) TCGA-HF-7132-01 3 127379697 127379697 G - PODXL2 Frame_Shift_Del p.V277* 0.16 TCGA-HF-7132-01 3 128339335 128339335 C T RPN1 Silent p.T581T 0.24 TCGA-HF-7132-01 3 12875432 12875434 AGA - CAND2 In_Frame_Del p.K1222del 0.12 TCGA-HF-7132-01 3 129239022 129239022 T G IFT122 Missense_Mutation p.F1265V 0.15 deleterious(0) probably_damaging(1) TCGA-HF-7132-01 3 129282078 129282078 C T PLXND1 Silent p.T1509T 0.31 TCGA-HF-7132-01 3 12977201 12977201 C A IQSEC1 Missense_Mutation p.G453C 0.10 deleterious(0) probably_damaging(0.996) TCGA-HF-7132-01 3 130992390 130992390 G A NEK11 Missense_Mutation p.A564T 0.21 tolerated(0.06) possibly_damaging(0.743) TCGA-HF-7132-01 3 131102097 131102097 C T NUDT16 3'UTR 0.38 TCGA-HF-7132-01 3 133698394 133698394 G A SLCO2A1 Silent p.S55S 0.06 TCGA-HF-7132-01 3 134884866 134884866 G A EPHB1 Missense_Mutation p.A548T 0.19 tolerated(0.2) benign(0.066) TCGA-HF-7132-01 3 135871374 135871374 G A MSL2 Missense_Mutation p.R117W 0.16 deleterious(0.02) possibly_damaging(0.827) TCGA-HF-7132-01 3 140407048 140407048 C - TRIM42 Frame_Shift_Del p.V510Cfs*6 0.14 TCGA-HF-7132-01 3 147127972 147127972 G A ZIC1 Missense_Mutation p.A25T 0.08 tolerated_low_confidence(0.64) benign(0.001) TCGA-HF-7132-01 3 147128612 147128612 C A ZIC1 Missense_Mutation p.P238H 0.19 deleterious(0) probably_damaging(0.998) TCGA-HF-7132-01 3 15057748 15057748 C T NR2C2 Silent p.G140G 0.15 TCGA-HF-7132-01 3 15637913 15637913 C T HACL1 Missense_Mutation p.A69T 0.15 deleterious(0.03) benign(0.323) TCGA-HF-7132-01 3 156422868 156422868 A G TIPARP Missense_Mutation p.Y641C 0.20 deleterious(0) probably_damaging(1) TCGA-HF-7132-01 3 160018781 160018781 C T IFT80 Missense_Mutation p.R402H 0.14 deleterious(0.02) benign(0.035) TCGA-HF-7132-01 3 164697114 164697114 T - SI 3'UTR 0.18 TCGA-HF-7132-01 3 169896574 169896574 C T PHC3 Missense_Mutation p.R56Q 0.12 deleterious(0.04) probably_damaging(0.975) TCGA-HF-7132-01 3 170102466 170102467 - A SKIL Frame_Shift_Ins p.T450Nfs*10 0.11 TCGA-HF-7132-01 3 170201192 170201192 C T SLC7A14 Silent p.S342S 0.16 TCGA-HF-7132-01 3 171965513 171965513 C T FNDC3B Missense_Mutation p.P152L 0.21 deleterious(0) possibly_damaging(0.556) TCGA-HF-7132-01 3 178916891 178916891 G A PIK3CA Missense_Mutation p.R93Q 0.17 deleterious(0.01) probably_damaging(0.978) TCGA-HF-7132-01 3 179076708 179076708 A G MFN1 Missense_Mutation p.N110S 0.20 deleterious(0) probably_damaging(0.912) TCGA-HF-7132-01 3 179288016 179288016 A - ACTL6A Frame_Shift_Del p.N90Mfs*47 0.19 TCGA-HF-7132-01 3 182870290 182870290 A C LAMP3 Missense_Mutation p.V254G 0.21 deleterious(0.03) possibly_damaging(0.696) TCGA-HF-7132-01 3 185165603 185165604 - A MAP3K13 Frame_Shift_Ins p.I295Nfs*8 0.13 TCGA-HF-7132-01 3 193220287 193220287 G T ATP13A4 Missense_Mutation p.L126I 0.13 tolerated(0.06) probably_damaging(0.995) TCGA-HF-7132-01 3 195452850 195452850 C T MUC20 Missense_Mutation p.P459L 0.14 tolerated(0.14) unknown(0) TCGA-HF-7132-01 3 195495991 195495991 G A MUC4 Silent p.D4477D 0.14 TCGA-HF-7132-01 3 197751531 197751532 - T LMLN Frame_Shift_Ins p.K549* 0.16 TCGA-HF-7132-01 3 20215770 20215770 T C SGOL1 Missense_Mutation p.E418G 0.27 deleterious(0.04) possibly_damaging(0.544) TCGA-HF-7132-01 3 36759617 36759617 A G DCLK3 Missense_Mutation p.L546P 0.15 deleterious(0) probably_damaging(1) TCGA-HF-7132-01 3 36887887 36887887 G A TRANK1 Silent p.N1637N 0.20 TCGA-HF-7132-01 3 37367332 37367333 - A GOLGA4 Frame_Shift_Ins p.E1343Rfs*16 0.12 TCGA-HF-7132-01 3 38287672 38287673 TC - OXSR1 Frame_Shift_Del p.L408Pfs*41 0.18 TCGA-HF-7132-01 3 44542042 44542042 C T ZNF852 Missense_Mutation p.G76E 0.14 tolerated(0.85) benign(0.033) TCGA-HF-7132-01 3 44763316 44763317 - A ZNF502 Frame_Shift_Ins p.N337Kfs*10 0.10 TCGA-HF-7132-01 3 44943120 44943120 G T TGM4 Missense_Mutation p.Q254H 0.29 deleterious(0) probably_damaging(0.99) TCGA-HF-7132-01 3 45132848 45132848 C T CDCP1 Missense_Mutation p.A604T 0.05 tolerated(0.21) probably_damaging(0.991) TCGA-HF-7132-01 3 45817323 45817323 G A SLC6A20 Missense_Mutation p.A171V 0.28 tolerated(0.98) probably_damaging(0.937) TCGA-HF-7132-01 3 45988802 45988802 G A CXCR6 Missense_Mutation p.A277T 0.28 deleterious(0) probably_damaging(0.949) TCGA-HF-7132-01 3 47030391 47030391 C T NBEAL2 Missense_Mutation p.A67V 0.13 tolerated(0.25) benign(0.021) TCGA-HF-7132-01 3 47098794 47098794 C T SETD2 Silent p.P2160P 0.14 TCGA-HF-7132-01 3 47454478 47454478 C G PTPN23 Missense_Mutation p.P1572A 0.44 unknown(0) TCGA-HF-7132-01 3 47459936 47459936 G A SCAP Missense_Mutation p.R736C 0.16 deleterious(0) benign(0.046) TCGA-HF-7132-01 3 47860732 47860732 C T DHX30 Intron 0.24 TCGA-HF-7132-01 3 4859858 4859858 G A ITPR1 Missense_Mutation p.V2639I 0.16 deleterious(0.01) benign(0.136) TCGA-HF-7132-01 3 48606837 48606837 G A COL7A1 Missense_Mutation p.R2553W 0.17 probably_damaging(0.996) TCGA-HF-7132-01 3 48683692 48683692 T C CELSR3 Splice_Site p.X2432_splice 0.16 TCGA-HF-7132-01 3 48697513 48697513 T C CELSR3 Missense_Mutation p.N852S 0.18 deleterious(0) probably_damaging(0.997) TCGA-HF-7132-01 3 48699725 48699725 C T CELSR3 Missense_Mutation p.V115I 0.25 tolerated_low_confidence(0.19) benign(0.001) TCGA-HF-7132-01 3 48717524 48717524 G A NCKIPSD Missense_Mutation p.R411C 0.17 tolerated(0.07) benign(0.001) TCGA-HF-7132-01 3 48789613 48789613 G T PRKAR2A Nonsense_Mutation p.C359* 0.19 TCGA-HF-7132-01 3 49064427 49064427 C A IMPDH2 Missense_Mutation p.K195N 0.05 tolerated(0.21) benign(0.02) TCGA-HF-7132-01 3 49457752 49457752 G A AMT Silent p.N121N 0.21 TCGA-HF-7132-01 3 49568441 49568441 C T DAG1 Missense_Mutation p.S166L 0.10 deleterious(0.02) benign(0.148) TCGA-HF-7132-01 3 49699943 49699943 T C BSN Silent p.R3555R 0.18 TCGA-HF-7132-01 3 49756465 49756465 A G AMIGO3 Missense_Mutation p.L145S 0.15 deleterious(0) probably_damaging(0.97) TCGA-HF-7132-01 3 50231210 50231210 G A GNAT1 Silent p.L158L 0.28 TCGA-HF-7132-01 3 50313226 50313226 C T LSMEM2 5'Flank 0.20 TCGA-HF-7132-01 3 50388931 50388931 G A XXcos-LUCA11.5 Missense_Mutation p.A23T 0.14 deleterious_low_confidence(0) unknown(0) TCGA-HF-7132-01 3 50685366 50685366 C T MAPKAPK3 Silent p.Y346Y 0.18 TCGA-HF-7132-01 3 51417604 51417604 C - DOCK3 Frame_Shift_Del p.P1852Qfs*45 0.35 TCGA-HF-7132-01 3 52021073 52021073 A C ACY1 Missense_Mutation p.K218T 0.15 deleterious(0) probably_damaging(0.998) TCGA-HF-7132-01 3 52237967 52237967 C T ALAS1 Silent p.D172D 0.20 TCGA-HF-7132-01 3 52524132 52524132 G A NISCH Silent p.V1166V 0.08 TCGA-HF-7132-01 3 52728093 52728093 A G GNL3 Missense_Mutation p.E514G 0.10 tolerated(0.18) benign(0.006) TCGA-HF-7132-01 3 52965033 52965033 T - SFMBT1 Frame_Shift_Del p.N240Mfs*12 0.15 TCGA-HF-7132-01 3 53223077 53223077 C A PRKCD Missense_Mutation p.L520I 0.12 tolerated(0.17) possibly_damaging(0.669) TCGA-HF-7132-01 3 56658877 56658877 G A FAM208A Nonsense_Mutation p.R1433* 0.16 TCGA-HF-7132-01 3 57132009 57132009 G A IL17RD Silent p.Y574Y 0.08 TCGA-HF-7132-01 3 62356932 62356932 G - FEZF2 Frame_Shift_Del p.F361Sfs*21 0.23 TCGA-HF-7132-01 3 62518693 62518693 T C CADPS Missense_Mutation p.Y715C 0.14 deleterious(0) possibly_damaging(0.759) TCGA-HF-7132-01 3 71096238 71096238 C A FOXP1 Missense_Mutation p.Q175H 0.07 deleterious(0.03) benign(0.216) TCGA-HF-7132-01 3 88040823 88040823 T - HTR1F Frame_Shift_Del p.F310Lfs*2 0.11 TCGA-HF-7132-01 3 9803194 9803194 A G CAMK1 Missense_Mutation p.Y195H 0.08 deleterious(0.02) probably_damaging(0.954) TCGA-HF-7132-01 3 99514656 99514656 A G COL8A1 Silent p.K637K 0.25 TCGA-HF-7132-01 3 9969997 9969997 G A IL17RC Missense_Mutation p.A367T 0.11 deleterious(0.01) possibly_damaging(0.891) TCGA-HF-7132-01 4 104640418 104640418 T G TACR3 Missense_Mutation p.T139P 0.08 deleterious(0) probably_damaging(0.974) TCGA-HF-7132-01 4 110972636 110972636 C T ELOVL6 Nonsense_Mutation p.W219* 0.15 TCGA-HF-7132-01 4 113970953 113970953 A - ANK2 Frame_Shift_Del p.R25Dfs*27 0.18 TCGA-HF-7132-01 4 119979106 119979106 T C SYNPO2 3'UTR 0.22 TCGA-HF-7132-01 4 121719471 121719471 A C PRDM5 Missense_Mutation p.L380R 0.09 tolerated(0.54) benign(0.071) TCGA-HF-7132-01 4 122854138 122854138 C T TRPC3 Missense_Mutation p.R92H 0.11 deleterious_low_confidence(0.02) probably_damaging(0.983) TCGA-HF-7132-01 4 123850212 123850212 T G SPATA5 Silent p.P102P 0.23 TCGA-HF-7132-01 4 124177318 124177318 G A SPATA5 Missense_Mutation p.A830T 0.13 tolerated(0.39) benign(0) TCGA-HF-7132-01 4 125591851 125591851 A T ANKRD50 Missense_Mutation p.L861M 0.14 tolerated(0.1) possibly_damaging(0.726) TCGA-HF-7132-01 4 126241559 126241559 T C FAT4 Silent p.G1331G 0.20 TCGA-HF-7132-01 4 126372561 126372561 G A FAT4 Missense_Mutation p.V3464I 0.11 possibly_damaging(0.6) TCGA-HF-7132-01 4 128878707 128878707 G A MFSD8 Nonsense_Mutation p.R35* 0.20 TCGA-HF-7132-01 4 129121762 129121762 A - LARP1B Frame_Shift_Del p.M753Cfs*21 0.27 TCGA-HF-7132-01 4 129864269 129864270 - TC SCLT1 Frame_Shift_Ins p.N505Rfs*11 0.24 TCGA-HF-7132-01 4 141888894 141888894 G A RNF150 Silent p.R206R 0.18 TCGA-HF-7132-01 4 153249385 153249385 G A FBXW7 Missense_Mutation p.R465C 0.22 deleterious(0) probably_damaging(1) TCGA-HF-7132-01 4 153896567 153896568 TG - FHDC1 Frame_Shift_Del p.V709Gfs*3 0.14 TCGA-HF-7132-01 4 154709813 154709813 G A SFRP2 Missense_Mutation p.R59W 0.14 tolerated(0.12) probably_damaging(0.971) TCGA-HF-7132-01 4 156632139 156632139 G A GUCY1A3 Silent p.S274S 0.24 TCGA-HF-7132-01 4 156723545 156723545 G A GUCY1B3 Silent p.K409K 0.09 TCGA-HF-7132-01 4 156725866 156725866 A G GUCY1B3 Missense_Mutation p.K559R 0.29 tolerated(0.06) benign(0.392) TCGA-HF-7132-01 4 158255214 158255214 C G GRIA2 Missense_Mutation p.P403R 0.10 tolerated(0.39) benign(0.001) TCGA-HF-7132-01 4 159091970 159091970 C T FAM198B Silent p.P186P 0.15 TCGA-HF-7132-01 4 160277143 160277143 G A RAPGEF2 Missense_Mutation p.R1436Q 0.31 deleterious_low_confidence(0.02) benign(0.281) TCGA-HF-7132-01 4 169393873 169393873 G T DDX60L 5'UTR 0.15 TCGA-HF-7132-01 4 183710390 183710390 A G TENM3 Missense_Mutation p.M1817V 0.10 tolerated(0.49) benign(0.067) TCGA-HF-7132-01 4 183720983 183720983 G A TENM3 Missense_Mutation p.V2527M 0.14 deleterious(0) possibly_damaging(0.868) TCGA-HF-7132-01 4 184606268 184606268 G A TRAPPC11 Silent p.R533R 0.21 TCGA-HF-7132-01 4 22425931 22425931 A G GPR125 Silent p.A496A 0.16 TCGA-HF-7132-01 4 23815680 23815680 C T PPARGC1A Missense_Mutation p.D476N 0.11 tolerated(0.12) benign(0.024) TCGA-HF-7132-01 4 2648497 2648497 C T FAM193A Missense_Mutation p.R126C 0.19 tolerated(0.11) possibly_damaging(0.721) TCGA-HF-7132-01 4 36121278 36121278 G A ARAP2 Silent p.D1319D 0.10 TCGA-HF-7132-01 4 38691351 38691351 A G KLF3 Silent p.V182V 0.09 TCGA-HF-7132-01 4 38933860 38933860 T C FAM114A1 Missense_Mutation p.V443A 0.21 deleterious(0.03) benign(0.016) TCGA-HF-7132-01 4 39448945 39448946 - G KLB Frame_Shift_Ins p.V869Gfs*32 0.17 TCGA-HF-7132-01 4 39918804 39918804 A - PDS5A Frame_Shift_Del p.F247Sfs*12 0.14 TCGA-HF-7132-01 4 40832535 40832535 C T APBB2 Missense_Mutation p.R530Q 0.11 deleterious(0) probably_damaging(0.968) TCGA-HF-7132-01 4 41984155 41984155 G A DCAF4L1 Missense_Mutation p.V116M 0.18 tolerated(1) benign(0.008) TCGA-HF-7132-01 4 42072645 42072645 G A SLC30A9 Missense_Mutation p.R452Q 0.22 deleterious(0.01) possibly_damaging(0.481) TCGA-HF-7132-01 4 4283517 4283517 C A LYAR Missense_Mutation p.W77L 0.17 deleterious(0.04) benign(0.32) TCGA-HF-7132-01 4 4411342 4411342 G A NSG1 Missense_Mutation p.V97I 0.18 tolerated(0.33) benign(0.009) TCGA-HF-7132-01 4 46125887 46125887 C T GABRG1 Missense_Mutation p.R15Q 0.13 tolerated_low_confidence(0.34) benign(0.004) TCGA-HF-7132-01 4 48572868 48572868 G A FRYL Missense_Mutation p.A991V 0.06 deleterious(0) possibly_damaging(0.856) TCGA-HF-7132-01 4 48588698 48588698 G A FRYL Missense_Mutation p.A563V 0.20 deleterious(0) probably_damaging(0.97) TCGA-HF-7132-01 4 55133541 55133541 T C PDGFRA Missense_Mutation p.V282A 0.20 tolerated(0.11) benign(0.029) TCGA-HF-7132-01 4 57335866 57335866 G A SRP72 Missense_Mutation p.V53I 0.19 tolerated(0.25) possibly_damaging(0.718) TCGA-HF-7132-01 4 5838617 5838617 T C CRMP1 Missense_Mutation p.T443A 0.18 tolerated(0.05) benign(0.444) TCGA-HF-7132-01 4 62758566 62758566 A G LPHN3 Missense_Mutation p.Q490R 0.25 tolerated(0.58) benign(0.101) TCGA-HF-7132-01 4 66356423 66356423 G - EPHA5 Frame_Shift_Del p.S359Lfs*63 0.15 TCGA-HF-7132-01 4 68928284 68928284 C T TMPRSS11F Intron 0.14 TCGA-HF-7132-01 4 7194811 7194811 G A SORCS2 Silent p.T146T 0.15 TCGA-HF-7132-01 4 74964394 74964394 G A CXCL2 Missense_Mutation p.L78F 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-HF-7132-01 4 76943029 76943029 C T CXCL10 3'UTR 0.16 TCGA-HF-7132-01 4 76943075 76943075 C A CXCL10 3'UTR 0.13 TCGA-HF-7132-01 4 7776557 7776559 CTC - AFAP1 In_Frame_Del p.E657del 0.24 TCGA-HF-7132-01 4 77817704 77817704 C - SOWAHB Frame_Shift_Del p.K434Sfs*49 0.21 TCGA-HF-7132-01 4 79420948 79420948 G A FRAS1 Silent p.L3063L 0.12 TCGA-HF-7132-01 4 84368060 84368060 T - HELQ Frame_Shift_Del p.G441Dfs*5 0.15 TCGA-HF-7132-01 4 85758174 85758175 - A WDFY3 Frame_Shift_Ins p.D162* 0.16 TCGA-HF-7132-01 4 8616156 8616156 C - CPZ Frame_Shift_Del p.E481Rfs*16 0.11 TCGA-HF-7132-01 4 88414892 88414892 T C SPARCL1 Missense_Mutation p.R354G 0.18 tolerated(0.18) benign(0.006) TCGA-HF-7132-01 4 951785 951785 G A TMEM175 Missense_Mutation p.R339Q 0.22 tolerated(0.73) benign(0.037) TCGA-HF-7132-01 4 96124100 96124100 C A UNC5C Missense_Mutation p.G640W 0.20 deleterious(0) probably_damaging(0.995) TCGA-HF-7132-01 5 100147502 100147502 G A ST8SIA4 3'UTR 0.35 TCGA-HF-7132-01 5 108290522 108290522 A - FER Frame_Shift_Del p.K476Nfs*53 0.13 TCGA-HF-7132-01 5 114573651 114573651 C T PGGT1B Missense_Mutation p.G128D 0.13 deleterious(0) probably_damaging(0.913) TCGA-HF-7132-01 5 115230848 115230848 T C AP3S1 Missense_Mutation p.V113A 0.13 tolerated(0.26) benign(0.005) TCGA-HF-7132-01 5 115782940 115782940 G A SEMA6A Missense_Mutation p.T821M 0.15 deleterious(0.04) benign(0.294) TCGA-HF-7132-01 5 118969758 118969758 G A FAM170A Silent p.S105S 0.30 TCGA-HF-7132-01 5 1235779 1235779 T C SLC6A18 Splice_Site p.X207_splice 0.10 TCGA-HF-7132-01 5 126746174 126746174 C T MEGF10 Silent p.G337G 0.07 TCGA-HF-7132-01 5 132159629 132159629 C T SHROOM1 Missense_Mutation p.G575E 0.13 deleterious(0) probably_damaging(1) TCGA-HF-7132-01 5 132232379 132232379 G A AFF4 Missense_Mutation p.T648I 0.07 deleterious(0) benign(0.337) TCGA-HF-7132-01 5 133873698 133873698 C T JADE2 Silent p.S26S 0.08 TCGA-HF-7132-01 5 135398902 135398902 G T TGFBI Missense_Mutation p.R680M 0.23 deleterious_low_confidence(0) possibly_damaging(0.898) TCGA-HF-7132-01 5 135587451 135587451 G A TRPC7 Missense_Mutation p.R489C 0.14 deleterious(0) probably_damaging(0.982) TCGA-HF-7132-01 5 136314321 136314321 T G SPOCK1 3'UTR 0.12 TCGA-HF-7132-01 5 137451362 137451362 T - NME5 3'UTR 0.36 TCGA-HF-7132-01 5 13864659 13864659 C T DNAH5 Silent p.P1481P 0.16 TCGA-HF-7132-01 5 13900481 13900481 A G DNAH5 Missense_Mutation p.V698A 0.07 benign(0.418) TCGA-HF-7132-01 5 140174696 140174696 G A PCDHA2 Silent p.A49A 0.31 TCGA-HF-7132-01 5 140175430 140175430 C G PCDHA2 Missense_Mutation p.T294S 0.13 tolerated_low_confidence(0.69) benign(0.001) TCGA-HF-7132-01 5 140188556 140188556 G A PCDHA4 Missense_Mutation p.R595H 0.31 tolerated_low_confidence(0.07) probably_damaging(0.934) TCGA-HF-7132-01 5 140201489 140201489 C T PCDHA5 Silent p.F43F 0.33 TCGA-HF-7132-01 5 140201685 140201685 G A PCDHA5 Missense_Mutation p.V109M 0.28 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-HF-7132-01 5 140209128 140209128 G A PCDHA6 Silent p.A484A 0.27 TCGA-HF-7132-01 5 140255202 140255202 G A PCDHA12 Missense_Mutation p.A49T 0.17 deleterious_low_confidence(0.02) probably_damaging(0.941) TCGA-HF-7132-01 5 140256424 140256424 C T PCDHA12 Missense_Mutation p.A456V 0.29 deleterious_low_confidence(0.03) benign(0.087) TCGA-HF-7132-01 5 140308873 140308873 G A PCDHAC1 Missense_Mutation p.R799Q 0.27 tolerated(0.35) benign(0.003) TCGA-HF-7132-01 5 140432846 140432846 A G PCDHB1 Silent p.S597S 0.27 TCGA-HF-7132-01 5 140476383 140476383 A G PCDHB2 Missense_Mutation p.Q670R 0.10 deleterious_low_confidence(0) possibly_damaging(0.792) TCGA-HF-7132-01 5 140476537 140476537 G A PCDHB2 Silent p.A721A 0.21 TCGA-HF-7132-01 5 140482363 140482363 G A PCDHB3 Silent p.A710A 0.12 TCGA-HF-7132-01 5 140515304 140515304 C T PCDHB5 Silent p.C96C 0.13 TCGA-HF-7132-01 5 140517028 140517028 C T PCDHB5 Missense_Mutation p.P671L 0.14 deleterious_low_confidence(0.01) benign(0.064) TCGA-HF-7132-01 5 140536989 140536989 C T PCDHB17 Silent p.I471I 0.28 TCGA-HF-7132-01 5 140711013 140711013 C T PCDHGA1 Silent p.N254N 0.15 TCGA-HF-7132-01 5 140723769 140723769 C T PCDHGA3 Missense_Mutation p.R57W 0.29 tolerated_low_confidence(0.22) benign(0.042) TCGA-HF-7132-01 5 140744911 140744911 G T PCDHGA5 Missense_Mutation p.Q338H 0.15 tolerated_low_confidence(0.05) possibly_damaging(0.796) TCGA-HF-7132-01 5 140799068 140799068 C T PCDHGB7 Silent p.L548L 0.12 TCGA-HF-7132-01 5 140800954 140800954 G T PCDHGA11 Missense_Mutation p.G54W 0.10 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-HF-7132-01 5 140855642 140855642 G A PCDHGC3 5'UTR 0.17 TCGA-HF-7132-01 5 141004855 141004855 G A HDAC3 Silent p.D379D 0.28 TCGA-HF-7132-01 5 141304247 141304247 C T KIAA0141 Missense_Mutation p.P45S 0.04 tolerated(0.1) benign(0.035) TCGA-HF-7132-01 5 141336951 141336951 G - PCDH12 Frame_Shift_Del p.L156Wfs*42 0.12 TCGA-HF-7132-01 5 14477004 14477004 T - TRIO Frame_Shift_Del p.L2031* 0.39 TCGA-HF-7132-01 5 147661674 147661674 G A SPINK13 Missense_Mutation p.C39Y 0.14 deleterious(0) probably_damaging(0.997) TCGA-HF-7132-01 5 149374812 149374812 G A TIGD6 Missense_Mutation p.T367I 0.22 deleterious(0) possibly_damaging(0.754) TCGA-HF-7132-01 5 150029852 150029852 G A SYNPO Missense_Mutation p.G916E 0.24 deleterious(0) probably_damaging(0.992) TCGA-HF-7132-01 5 150908810 150908810 G A FAT2 Missense_Mutation p.P3319S 0.10 probably_damaging(1) TCGA-HF-7132-01 5 150924238 150924238 C T FAT2 Silent p.T2150T 0.17 TCGA-HF-7132-01 5 154183869 154183869 T C LARP1 Splice_Site p.X772_splice 0.19 TCGA-HF-7132-01 5 159344089 159344089 C T ADRA1B Silent p.A59A 0.26 TCGA-HF-7132-01 5 170736389 170736389 C T TLX3 Missense_Mutation p.A7V 0.28 tolerated(0.08) benign(0.005) TCGA-HF-7132-01 5 17354205 17354205 T - CTD-2139B15.2 Intron 0.25 TCGA-HF-7132-01 5 175305939 175305939 G - CPLX2 Frame_Shift_Del p.G22Efs*51 0.22 TCGA-HF-7132-01 5 176471424 176471425 - C ZNF346 Frame_Shift_Ins p.I138Hfs*3 0.22 TCGA-HF-7132-01 5 176520278 176520278 C - FGFR4 Frame_Shift_Del p.R401Afs*50 0.25 TCGA-HF-7132-01 5 176858998 176858998 C T GRK6 Missense_Mutation p.R51C 0.17 tolerated(0.1) possibly_damaging(0.833) TCGA-HF-7132-01 5 176938902 176938902 C A DDX41 Missense_Mutation p.G587C 0.21 deleterious(0) probably_damaging(0.998) TCGA-HF-7132-01 5 180046343 180046343 G A FLT4 Missense_Mutation p.R891C 0.22 deleterious(0) probably_damaging(0.969) TCGA-HF-7132-01 5 180661667 180661668 AG - TRIM41 Frame_Shift_Del p.E596Dfs*58 0.14 TCGA-HF-7132-01 5 24509865 24509865 C T CDH10 Missense_Mutation p.D356N 0.30 deleterious(0.03) probably_damaging(0.971) TCGA-HF-7132-01 5 31538590 31538590 G T C5orf22 Nonsense_Mutation p.G201* 0.06 TCGA-HF-7132-01 5 33546197 33546197 C - ADAMTS12 Frame_Shift_Del p.C1472Afs*81 0.17 TCGA-HF-7132-01 5 34008070 34008070 A G AMACR Missense_Mutation p.F19L 0.06 tolerated(0.14) benign(0.22) TCGA-HF-7132-01 5 34923325 34923325 T C BRIX1 Missense_Mutation p.F217L 0.20 deleterious(0.04) probably_damaging(0.955) TCGA-HF-7132-01 5 34954736 34954736 G T DNAJC21 Missense_Mutation p.G550C 0.12 deleterious(0) probably_damaging(0.99) TCGA-HF-7132-01 5 35667345 35667345 C T SPEF2 Nonsense_Mutation p.R447* 0.08 TCGA-HF-7132-01 5 3599703 3599703 C T IRX1 Missense_Mutation p.P214L 0.15 tolerated(0.14) possibly_damaging(0.502) TCGA-HF-7132-01 5 36225645 36225645 G A NADK2 Missense_Mutation p.R187W 0.19 deleterious(0) probably_damaging(0.999) TCGA-HF-7132-01 5 37167306 37167306 T - C5orf42 Frame_Shift_Del p.T2415Hfs*19 0.20 TCGA-HF-7132-01 5 38407104 38407104 G A EGFLAM Missense_Mutation p.G335S 0.17 tolerated(0.57) benign(0.002) TCGA-HF-7132-01 5 39394336 39394337 - T DAB2 Frame_Shift_Ins p.K30Efs*4 0.22 TCGA-HF-7132-01 5 40716358 40716358 T G TTC33 Silent p.S226S 0.21 TCGA-HF-7132-01 5 52402940 52402940 G - MOCS2 Frame_Shift_Del p.P22Hfs*2 0.23 TCGA-HF-7132-01 5 54403958 54403958 G A GZMA Missense_Mutation p.M121I 0.11 tolerated(0.05) benign(0.004) TCGA-HF-7132-01 5 56526980 56526980 A G GPBP1 Silent p.T88T 0.09 TCGA-HF-7132-01 5 64824337 64824337 A G CENPK Missense_Mutation p.L180S 0.16 deleterious(0) probably_damaging(0.981) TCGA-HF-7132-01 5 64887588 64887589 - T TRIM23 3'UTR 0.17 TCGA-HF-7132-01 5 6604300 6604300 G A NSUN2 Silent p.P636P 0.17 TCGA-HF-7132-01 5 70766233 70766233 T - BDP1 Frame_Shift_Del p.L313* 0.27 TCGA-HF-7132-01 5 79025033 79025033 G T CMYA5 Missense_Mutation p.G149C 0.23 probably_damaging(0.979) TCGA-HF-7132-01 5 79031458 79031458 A - CMYA5 Frame_Shift_Del p.E2293Kfs*9 0.13 TCGA-HF-7132-01 5 79854681 79854681 G A ANKRD34B Silent p.D386D 0.27 TCGA-HF-7132-01 5 82373170 82373170 T C TMEM167A 5'UTR 0.04 TCGA-HF-7132-01 5 89815177 89815177 C T LYSMD3 Missense_Mutation p.R127K 0.10 tolerated(0.45) benign(0.017) TCGA-HF-7132-01 5 89949492 89949492 G A GPR98 Silent p.T1367T 0.14 TCGA-HF-7132-01 5 95242268 95242268 T C ELL2 Missense_Mutation p.N234D 0.32 deleterious(0.02) benign(0.063) TCGA-HF-7132-01 5 96079410 96079410 G A CAST Intron 0.25 TCGA-HF-7132-01 5 99871497 99871497 T C FAM174A Missense_Mutation p.V88A 0.17 tolerated(0.78) benign(0) TCGA-HF-7132-01 6 106989472 106989472 A G AIM1 Silent p.K1211K 0.16 TCGA-HF-7132-01 6 107389901 107389901 C T BEND3 3'UTR 0.11 TCGA-HF-7132-01 6 107824871 107824871 A - SOBP Frame_Shift_Del p.N37Tfs*3 0.16 TCGA-HF-7132-01 6 109471409 109471409 A G CEP57L1 Silent p.V143V 0.19 TCGA-HF-7132-01 6 109787365 109787365 G A ZBTB24 Missense_Mutation p.L595F 0.21 deleterious(0) probably_damaging(0.985) TCGA-HF-7132-01 6 110714089 110714089 G A DDO Silent p.G333G 0.12 TCGA-HF-7132-01 6 112496670 112496672 TTG - LAMA4 In_Frame_Del p.N400del 0.25 TCGA-HF-7132-01 6 121577313 121577313 G A TBC1D32 Missense_Mutation p.R618C 0.19 tolerated(0.07) benign(0.112) TCGA-HF-7132-01 6 125550288 125550288 C T TPD52L1 Nonsense_Mutation p.R54* 0.23 TCGA-HF-7132-01 6 127794434 127794435 - A SOGA3 Frame_Shift_Ins p.V946Cfs*28 0.25 TCGA-HF-7132-01 6 129621993 129621993 C - LAMA2 Frame_Shift_Del p.H1051Tfs*24 0.17 TCGA-HF-7132-01 6 131973697 131973697 G A ENPP3 Missense_Mutation p.C98Y 0.15 deleterious(0) probably_damaging(1) TCGA-HF-7132-01 6 133070863 133070863 C T VNN2 Missense_Mutation p.E448K 0.32 tolerated(0.18) benign(0.001) TCGA-HF-7132-01 6 138655839 138655839 C T KIAA1244 Silent p.T1952T 0.15 TCGA-HF-7132-01 6 139186191 139186191 C T ECT2L Silent p.C450C 0.33 TCGA-HF-7132-01 6 144165680 144165680 G A LTV1 Missense_Mutation p.V21I 0.26 deleterious(0) probably_damaging(0.951) TCGA-HF-7132-01 6 144508363 144508363 C T STX11 Missense_Mutation p.A200V 0.19 deleterious(0.01) probably_damaging(0.934) TCGA-HF-7132-01 6 148792601 148792601 G A SASH1 Missense_Mutation p.R159Q 0.12 deleterious_low_confidence(0) possibly_damaging(0.663) TCGA-HF-7132-01 6 149777807 149777807 G A ZC3H12D Silent p.N225N 0.18 TCGA-HF-7132-01 6 151790201 151790201 A G C6orf211 Missense_Mutation p.T428A 0.08 tolerated(0.12) benign(0.271) TCGA-HF-7132-01 6 152129139 152129139 T C ESR1 Missense_Mutation p.L31P 0.10 tolerated(0.06) possibly_damaging(0.795) TCGA-HF-7132-01 6 152847285 152847285 T C SYNE1 Missense_Mutation p.D52G 0.11 possibly_damaging(0.887) TCGA-HF-7132-01 6 154360953 154360953 A G OPRM1 Missense_Mutation p.M185V 0.17 deleterious(0) benign(0.202) TCGA-HF-7132-01 6 155565829 155565834 AGTTTC - TIAM2 In_Frame_Del p.F1153_Q1154del 0.16 TCGA-HF-7132-01 6 155581417 155581417 G A TFB1M Nonsense_Mutation p.R262* 0.17 TCGA-HF-7132-01 6 157528079 157528079 C T ARID1B Missense_Mutation p.A1935V 0.24 benign(0.399) TCGA-HF-7132-01 6 159457193 159457193 C T TAGAP Missense_Mutation p.G621E 0.16 tolerated(0.41) benign(0.293) TCGA-HF-7132-01 6 161969940 161969940 C T PARK2 Silent p.P343P 0.18 TCGA-HF-7132-01 6 167275739 167275739 C T RPS6KA2 5'UTR 0.23 TCGA-HF-7132-01 6 167708152 167708152 G A UNC93A Missense_Mutation p.V79M 0.20 deleterious(0.03) possibly_damaging(0.529) TCGA-HF-7132-01 6 168352423 168352423 C T MLLT4 Silent p.P1456P 0.24 TCGA-HF-7132-01 6 18166532 18166532 A - KDM1B Frame_Shift_Del p.I116Yfs*48 0.26 TCGA-HF-7132-01 6 25450638 25450638 G A LRRC16A Splice_Site p.X180_splice 0.15 TCGA-HF-7132-01 6 27216672 27216672 T G PRSS16 Missense_Mutation p.I95R 0.28 deleterious(0) possibly_damaging(0.866) TCGA-HF-7132-01 6 31079953 31079953 C T C6orf15 Silent p.P61P 0.11 TCGA-HF-7132-01 6 31655074 31655074 T C ABHD16A Splice_Site p.X532_splice 0.26 TCGA-HF-7132-01 6 31914339 31914339 T C CFB Missense_Mutation p.L587P 0.23 tolerated(0.15) probably_damaging(0.916) TCGA-HF-7132-01 6 32805788 32805788 G - TAP2 Frame_Shift_Del p.L75* 0.12 TCGA-HF-7132-01 6 32811742 32811743 - G PSMB8 Frame_Shift_Ins p.R11Pfs*58 0.18 TCGA-HF-7132-01 6 33236284 33236284 G A VPS52 Missense_Mutation p.R231W 0.20 deleterious(0) probably_damaging(0.978) TCGA-HF-7132-01 6 33410722 33410722 C T SYNGAP1 Missense_Mutation p.P798L 0.25 tolerated(0.2) possibly_damaging(0.734) TCGA-HF-7132-01 6 33642006 33642006 G A ITPR3 Missense_Mutation p.R1027H 0.31 tolerated(0.52) benign(0.001) TCGA-HF-7132-01 6 33657105 33657105 G A ITPR3 Missense_Mutation p.R2262H 0.21 tolerated(0.07) possibly_damaging(0.802) TCGA-HF-7132-01 6 34730386 34730386 G T SNRPC Missense_Mutation p.K22N 0.23 deleterious(0) probably_damaging(0.998) TCGA-HF-7132-01 6 348149 348149 A G DUSP22 Missense_Mutation p.M104V 0.08 deleterious(0) probably_damaging(0.997) TCGA-HF-7132-01 6 3850780 3850780 G A FAM50B Silent p.P245P 0.28 TCGA-HF-7132-01 6 38709643 38709643 G A DNAH8 Missense_Mutation p.A208T 0.28 possibly_damaging(0.864) TCGA-HF-7132-01 6 38790618 38790618 T - DNAH8 Frame_Shift_Del p.F960Lfs*10 0.19 TCGA-HF-7132-01 6 39196773 39196773 A G KCNK5 Missense_Mutation p.Y39H 0.29 tolerated(0.11) benign(0.129) TCGA-HF-7132-01 6 40399587 40399588 - G LRFN2 Frame_Shift_Ins p.E423Gfs*8 0.25 TCGA-HF-7132-01 6 42227226 42227226 G - TRERF1 Frame_Shift_Del p.P707Lfs*8 0.31 TCGA-HF-7132-01 6 43568821 43568821 C T POLH Missense_Mutation p.R253C 0.24 tolerated(0.07) benign(0.02) TCGA-HF-7132-01 6 43612962 43612962 C T RSPH9 Missense_Mutation p.R43W 0.15 deleterious(0) probably_damaging(0.942) TCGA-HF-7132-01 6 47678561 47678561 A - GPR115 Frame_Shift_Del p.K82Sfs*29 0.18 TCGA-HF-7132-01 6 4952571 4952571 G A CDYL Silent p.Q468Q 0.32 TCGA-HF-7132-01 6 49754037 49754037 A G PGK2 Silent p.T288T 0.26 TCGA-HF-7132-01 6 51920455 51920455 C T PKHD1 Missense_Mutation p.R589H 0.29 tolerated(1) benign(0.001) TCGA-HF-7132-01 6 62442603 62442603 C T KHDRBS2 Missense_Mutation p.A293T 0.20 tolerated(0.21) benign(0.057) TCGA-HF-7132-01 6 73902388 73902388 G A KCNQ5 Missense_Mutation p.G623S 0.22 deleterious(0) benign(0.132) TCGA-HF-7132-01 6 7583159 7583160 - GA DSP Frame_Shift_Ins p.K1892Rfs*38 0.09 TCGA-HF-7132-01 6 75840678 75840678 G A COL12A1 Missense_Mutation p.T1986M 0.23 benign(0.046) TCGA-HF-7132-01 6 75843032 75843032 C T COL12A1 Missense_Mutation p.R1924H 0.14 probably_damaging(0.93) TCGA-HF-7132-01 6 75866132 75866132 G A COL12A1 Missense_Mutation p.R1031C 0.20 probably_damaging(0.939) TCGA-HF-7132-01 6 79650501 79650503 AAC - PHIP In_Frame_Del p.L1791del 0.10 TCGA-HF-7132-01 6 80228566 80228566 C T LCA5 Missense_Mutation p.A16T 0.22 tolerated(0.22) benign(0.005) TCGA-HF-7132-01 6 82912316 82912316 A G IBTK Silent p.Y886Y 0.09 TCGA-HF-7132-01 6 83075702 83075702 C A TPBG Missense_Mutation p.L342M 0.24 deleterious(0) probably_damaging(0.999) TCGA-HF-7132-01 6 87725829 87725829 C A HTR1E Missense_Mutation p.F259L 0.15 tolerated(0.66) benign(0) TCGA-HF-7132-01 6 89974270 89974270 G T GABRR2 Missense_Mutation p.P316Q 0.06 deleterious(0) probably_damaging(0.988) TCGA-HF-7132-01 7 100855210 100855210 G A PLOD3 Silent p.P383P 0.27 TCGA-HF-7132-01 7 102045105 102045105 C T PRKRIP1 Nonsense_Mutation p.Q123* 0.16 TCGA-HF-7132-01 7 103155847 103155847 G A RELN Missense_Mutation p.A2635V 0.13 tolerated(0.08) benign(0.267) TCGA-HF-7132-01 7 104681416 104681416 C A KMT2E Missense_Mutation p.P6Q 0.21 deleterious_low_confidence(0) unknown(0) TCGA-HF-7132-01 7 107531652 107531652 A G DLD 5'UTR 0.25 TCGA-HF-7132-01 7 107575868 107575868 C T LAMB1 Missense_Mutation p.A1394T 0.04 tolerated(0.18) benign(0.146) TCGA-HF-7132-01 7 107615466 107615466 G A LAMB1 Missense_Mutation p.R483C 0.21 deleterious(0) probably_damaging(0.999) TCGA-HF-7132-01 7 1097241 1097241 G A GPR146 Silent p.S30S 0.33 TCGA-HF-7132-01 7 110763830 110763830 C A LRRN3 Silent p.P334P 0.11 TCGA-HF-7132-01 7 112112914 112112914 A C IFRD1 Silent p.R422R 0.12 TCGA-HF-7132-01 7 1132424 1132424 G A GPER1 Missense_Mutation p.A354T 0.13 tolerated_low_confidence(0.77) benign(0.012) TCGA-HF-7132-01 7 11457139 11457139 T C THSD7A Missense_Mutation p.K1159E 0.06 tolerated(0.27) benign(0.3) TCGA-HF-7132-01 7 117232511 117232511 C T CFTR Nonsense_Mutation p.R764* 0.26 TCGA-HF-7132-01 7 119915075 119915075 G A KCND2 Missense_Mutation p.G130D 0.19 tolerated(0.06) probably_damaging(0.985) TCGA-HF-7132-01 7 120373105 120373105 C T KCND2 Nonsense_Mutation p.R422* 0.06 TCGA-HF-7132-01 7 123120018 123120018 C T IQUB Missense_Mutation p.R414Q 0.12 deleterious(0.02) benign(0.054) TCGA-HF-7132-01 7 123302716 123302716 G A LMOD2 Missense_Mutation p.R359H 0.15 deleterious(0) probably_damaging(0.987) TCGA-HF-7132-01 7 124469343 124469343 T C POT1 Missense_Mutation p.D520G 0.13 tolerated(0.2) benign(0.002) TCGA-HF-7132-01 7 127637892 127637892 G A SND1 Intron 0.19 TCGA-HF-7132-01 7 127732146 127732146 G A SND1 3'UTR 0.24 TCGA-HF-7132-01 7 128038487 128038487 C T IMPDH1 Missense_Mutation p.G352D 0.20 deleterious(0.01) possibly_damaging(0.7) TCGA-HF-7132-01 7 129350368 129350368 T A NRF1 Missense_Mutation p.V307D 0.19 deleterious(0) possibly_damaging(0.549) TCGA-HF-7132-01 7 136700421 136700421 T C CHRM2 Missense_Mutation p.V270A 0.20 tolerated(0.99) benign(0.004) TCGA-HF-7132-01 7 139164494 139164494 G - KLRG2 Frame_Shift_Del p.P295Qfs*37 0.11 TCGA-HF-7132-01 7 142965961 142965961 A - GSTK1 3'UTR 0.17 TCGA-HF-7132-01 7 143013362 143013362 C - CLCN1 Frame_Shift_Del p.Q21Sfs*56 0.12 TCGA-HF-7132-01 7 148427287 148427288 AG - CUL1 Frame_Shift_Del p.R25Sfs*26 0.15 TCGA-HF-7132-01 7 149512418 149512418 G A SSPO RNA 0.30 TCGA-HF-7132-01 7 1518027 1518027 G A INTS1 Silent p.S1535S 0.19 TCGA-HF-7132-01 7 1535174 1535174 C T INTS1 Missense_Mutation p.R576H 0.32 tolerated(0.24) benign(0.08) TCGA-HF-7132-01 7 154585835 154585835 G A DPP6 Missense_Mutation p.A395T 0.24 deleterious(0.02) probably_damaging(0.943) TCGA-HF-7132-01 7 154862987 154862987 G A HTR5A-AS1 Silent p.A9A 0.21 TCGA-HF-7132-01 7 156518499 156518499 C T LMBR1 Silent p.T342T 0.25 TCGA-HF-7132-01 7 156743059 156743059 A G NOM1 Missense_Mutation p.S210G 0.15 deleterious(0) possibly_damaging(0.483) TCGA-HF-7132-01 7 158560419 158560419 C T ESYT2 Missense_Mutation p.V332M 0.13 deleterious(0) probably_damaging(0.999) TCGA-HF-7132-01 7 1937855 1937855 C A MAD1L1 Missense_Mutation p.G660V 0.38 tolerated(0.15) benign(0.045) TCGA-HF-7132-01 7 21942677 21942677 C T CDCA7L Missense_Mutation p.R418H 0.13 deleterious(0) possibly_damaging(0.846) TCGA-HF-7132-01 7 27224775 27224775 C A HOXA11 5'UTR 0.22 TCGA-HF-7132-01 7 28997415 28997415 C T AC005013.5 RNA 0.20 TCGA-HF-7132-01 7 36927225 36927225 G A ELMO1 Missense_Mutation p.R552C 0.15 deleterious(0) probably_damaging(0.945) TCGA-HF-7132-01 7 42005843 42005843 G A GLI3 Missense_Mutation p.T943M 0.15 deleterious(0) probably_damaging(0.968) TCGA-HF-7132-01 7 42006188 42006188 G A GLI3 Missense_Mutation p.P828L 0.20 tolerated(0.06) possibly_damaging(0.803) TCGA-HF-7132-01 7 43351514 43351514 C T HECW1 Silent p.G60G 0.21 TCGA-HF-7132-01 7 44149840 44149840 C T AEBP1 Missense_Mutation p.A432V 0.16 deleterious(0) probably_damaging(1) TCGA-HF-7132-01 7 44874033 44874033 C A H2AFV 3'UTR 0.35 TCGA-HF-7132-01 7 47474967 47474967 C T TNS3 Silent p.P79P 0.05 TCGA-HF-7132-01 7 4876168 4876168 C - RADIL Frame_Shift_Del p.D202Mfs*19 0.21 TCGA-HF-7132-01 7 50686887 50686887 C T GRB10 Missense_Mutation p.E253K 0.12 deleterious(0) benign(0.275) TCGA-HF-7132-01 7 5353487 5353487 G A TNRC18 Silent p.A2345A 0.15 TCGA-HF-7132-01 7 5765046 5765046 T - RNF216 Frame_Shift_Del p.K471Nfs*19 0.22 TCGA-HF-7132-01 7 5922230 5922230 C T OCM Silent p.S56S 0.16 TCGA-HF-7132-01 7 6187483 6187483 C T USP42 Missense_Mutation p.P449L 0.12 tolerated(0.06) benign(0.234) TCGA-HF-7132-01 7 635869 635869 C T PRKAR1B Missense_Mutation p.G208S 0.29 deleterious(0) probably_damaging(0.984) TCGA-HF-7132-01 7 63981713 63981713 C T ZNF680 Nonsense_Mutation p.W473* 0.18 TCGA-HF-7132-01 7 65439613 65439613 G A GUSB Missense_Mutation p.R382C 0.11 deleterious(0.01) probably_damaging(0.986) TCGA-HF-7132-01 7 72081707 72081707 T G TYW1B Missense_Mutation p.I205L 0.10 tolerated(0.35) benign(0.086) TCGA-HF-7132-01 7 72849435 72849435 C T FZD9 Silent p.P366P 0.10 TCGA-HF-7132-01 7 77569558 77569558 G A PHTF2 Missense_Mutation p.R526H 0.12 deleterious(0.04) probably_damaging(1) TCGA-HF-7132-01 7 77885526 77885526 G A MAGI2 Missense_Mutation p.A594V 0.18 deleterious(0.03) possibly_damaging(0.687) TCGA-HF-7132-01 7 82579564 82579564 G A PCLO Missense_Mutation p.T3447M 0.17 unknown(0) TCGA-HF-7132-01 7 83119550 83119550 A G SEMA3E Silent p.P52P 0.05 TCGA-HF-7132-01 7 83739842 83739842 C A SEMA3A Nonsense_Mutation p.G133* 0.19 TCGA-HF-7132-01 7 87060812 87060812 C T ABCB4 Missense_Mutation p.A601T 0.13 tolerated(0.15) benign(0.032) TCGA-HF-7132-01 7 891069 891069 C A SUN1 Missense_Mutation p.A236D 0.17 tolerated(0.19) benign(0.15) TCGA-HF-7132-01 7 91830633 91830633 T C KRIT1 Silent p.V710V 0.16 TCGA-HF-7132-01 7 92987813 92987813 T - CCDC132 3'UTR 0.15 TCGA-HF-7132-01 7 94539496 94539496 G A PPP1R9A Missense_Mutation p.R24Q 0.19 deleterious(0) probably_damaging(0.999) TCGA-HF-7132-01 7 97822648 97822648 C T LMTK2 Silent p.D957D 0.16 TCGA-HF-7132-01 7 97822957 97822957 C T LMTK2 Silent p.G1060G 0.17 TCGA-HF-7132-01 7 98508867 98508867 G T TRRAP Missense_Mutation p.E660D 0.16 benign(0.225) TCGA-HF-7132-01 7 99725616 99725616 G A MBLAC1 Missense_Mutation p.E200K 0.27 tolerated(0.06) benign(0.058) TCGA-HF-7132-01 8 100789120 100789120 C T VPS13B Silent p.C2480C 0.15 TCGA-HF-7132-01 8 104341961 104341961 A G FZD6 Silent p.K540K 0.31 TCGA-HF-7132-01 8 107773549 107773549 G A ABRA Missense_Mutation p.R288C 0.12 deleterious(0) probably_damaging(0.975) TCGA-HF-7132-01 8 107782442 107782442 T G ABRA 5'UTR 0.13 TCGA-HF-7132-01 8 11058321 11058321 C T XKR6 Silent p.V176V 0.13 TCGA-HF-7132-01 8 11058806 11058806 C T XKR6 Missense_Mutation p.A15T 0.06 tolerated_low_confidence(0.55) probably_damaging(0.985) TCGA-HF-7132-01 8 116632263 116632263 G - TRPS1 Frame_Shift_Del p.P21Lfs*2 0.12 TCGA-HF-7132-01 8 117950647 117950647 G A AARD Silent p.L55L 0.20 TCGA-HF-7132-01 8 119122745 119122745 G T EXT1 Missense_Mutation p.L181I 0.15 tolerated(0.06) possibly_damaging(0.675) TCGA-HF-7132-01 8 121528256 121528256 T C MTBP Missense_Mutation p.C691R 0.22 deleterious(0) possibly_damaging(0.483) TCGA-HF-7132-01 8 122641065 122641065 C T HAS2 Silent p.T172T 0.06 TCGA-HF-7132-01 8 124664918 124664919 - G KLHL38 Frame_Shift_Ins p.T84Nfs*19 0.18 TCGA-HF-7132-01 8 124714942 124714942 C T ANXA13 Silent p.S83S 0.14 TCGA-HF-7132-01 8 124786386 124786386 C T FAM91A1 Nonsense_Mutation p.R47* 0.03 TCGA-HF-7132-01 8 124792249 124792249 G A FAM91A1 Missense_Mutation p.A192T 0.15 tolerated(0.25) benign(0.003) TCGA-HF-7132-01 8 128748822 128748822 C A MYC 5'UTR 0.20 TCGA-HF-7132-01 8 12878931 12878931 G A KIAA1456 Missense_Mutation p.R248H 0.08 deleterious(0) probably_damaging(0.999) TCGA-HF-7132-01 8 134232870 134232870 C T WISP1 Silent p.N132N 0.06 TCGA-HF-7132-01 8 139606361 139606361 G - COL22A1 Frame_Shift_Del p.P1505Lfs*31 0.17 TCGA-HF-7132-01 8 139890158 139890158 C T COL22A1 Missense_Mutation p.A165T 0.24 unknown(0) TCGA-HF-7132-01 8 143996496 143996496 G A CYP11B2 Silent p.D187D 0.19 TCGA-HF-7132-01 8 144296964 144296964 C T GPIHBP1 Silent p.G86G 0.16 TCGA-HF-7132-01 8 144874928 144874928 C T SCRIB Missense_Mutation p.R1376H 0.27 probably_damaging(0.999) TCGA-HF-7132-01 8 144886852 144886852 G - SCRIB Frame_Shift_Del p.T966Pfs*9 0.19 TCGA-HF-7132-01 8 144895815 144895815 G A SCRIB Silent p.D146D 0.05 TCGA-HF-7132-01 8 144991824 144991824 A G PLEC Silent p.P4192P 0.16 TCGA-HF-7132-01 8 144998249 144998249 G A PLEC Missense_Mutation p.R2087C 0.13 unknown(0) TCGA-HF-7132-01 8 145060464 145060464 G A PARP10 Intron 0.09 TCGA-HF-7132-01 8 145065718 145065718 C - GRINA Frame_Shift_Del p.N112Tfs*56 0.18 TCGA-HF-7132-01 8 145111052 145111052 G A OPLAH Silent p.N698N 0.10 TCGA-HF-7132-01 8 145638043 145638043 G A SLC39A4 Missense_Mutation p.A608V 0.08 deleterious(0.01) possibly_damaging(0.587) TCGA-HF-7132-01 8 145699782 145699782 C - FOXH1 Frame_Shift_Del p.V313Wfs*15 0.13 TCGA-HF-7132-01 8 145725521 145725521 C A PPP1R16A Silent p.P173P 0.12 TCGA-HF-7132-01 8 145738726 145738726 G A RECQL4 Missense_Mutation p.R780W 0.15 deleterious(0) probably_damaging(0.988) TCGA-HF-7132-01 8 145771085 145771085 G A ARHGAP39 Missense_Mutation p.S690L 0.14 deleterious(0) probably_damaging(0.994) TCGA-HF-7132-01 8 1497079 1497079 G A DLGAP2 Missense_Mutation p.D74N 0.12 tolerated(0.44) benign(0.158) TCGA-HF-7132-01 8 17088329 17088329 G A CNOT7 Missense_Mutation p.A253V 0.15 tolerated(0.22) benign(0.006) TCGA-HF-7132-01 8 1833846 1833846 G A ARHGEF10 Silent p.P385P 0.22 TCGA-HF-7132-01 8 194678 194678 G T ZNF596 Missense_Mutation p.G95C 0.17 deleterious(0) possibly_damaging(0.594) TCGA-HF-7132-01 8 20107520 20107520 G A LZTS1 Missense_Mutation p.R502W 0.35 deleterious(0) possibly_damaging(0.904) TCGA-HF-7132-01 8 21905619 21905619 C T FGF17 Silent p.R170R 0.15 TCGA-HF-7132-01 8 21998164 21998164 C T REEP4 Missense_Mutation p.V27M 0.09 deleterious(0) probably_damaging(0.99) TCGA-HF-7132-01 8 22020095 22020095 C T SFTPC Silent p.S17S 0.13 TCGA-HF-7132-01 8 22548712 22548712 G - EGR3 Frame_Shift_Del p.Y147Tfs*44 0.14 TCGA-HF-7132-01 8 25293976 25293976 A - KCTD9 Frame_Shift_Del p.F175Lfs*6 0.09 TCGA-HF-7132-01 8 25343307 25343307 C T CDCA2 Silent p.A466A 0.11 TCGA-HF-7132-01 8 26238246 26238246 G A BNIP3L 5'Flank 0.28 TCGA-HF-7132-01 8 27279842 27279842 C T PTK2B Missense_Mutation p.R165C 0.18 tolerated(0.12) benign(0.009) TCGA-HF-7132-01 8 28210808 28210809 - G ZNF395 Frame_Shift_Ins p.H234Pfs*19 0.29 TCGA-HF-7132-01 8 30916670 30916670 C A WRN Missense_Mutation p.A33E 0.14 tolerated(0.2) benign(0.206) TCGA-HF-7132-01 8 30969281 30969281 C A WRN Missense_Mutation p.L747I 0.24 tolerated(0.29) benign(0.022) TCGA-HF-7132-01 8 3245031 3245031 A C CSMD1 Missense_Mutation p.L923V 0.30 possibly_damaging(0.88) TCGA-HF-7132-01 8 38066756 38066756 C - BAG4 Frame_Shift_Del p.P288Lfs*22 0.15 TCGA-HF-7132-01 8 38261959 38261959 C A LETM2 Missense_Mutation p.L338M 0.19 deleterious(0.01) possibly_damaging(0.591) TCGA-HF-7132-01 8 41522522 41522522 T C ANK1 Intron 0.10 TCGA-HF-7132-01 8 42179608 42179608 G A IKBKB Missense_Mutation p.R592Q 0.15 tolerated(0.19) possibly_damaging(0.73) TCGA-HF-7132-01 8 42231849 42231850 AG T DKK4 Frame_Shift_Del p.T148Nfs*59 0.09 TCGA-HF-7132-01 8 42586933 42586933 G A CHRNB3 Silent p.P161P 0.14 TCGA-HF-7132-01 8 48689517 48689518 - T PRKDC Frame_Shift_Ins p.G4023Rfs*12 0.15 TCGA-HF-7132-01 8 48743175 48743175 G A PRKDC Silent p.A2795A 0.09 TCGA-HF-7132-01 8 49647718 49647718 G A EFCAB1 5'UTR 0.23 TCGA-HF-7132-01 8 51449300 51449300 C T SNTG1 Silent p.C204C 0.09 TCGA-HF-7132-01 8 52320800 52320800 G A PXDNL Silent p.S1128S 0.14 TCGA-HF-7132-01 8 52321953 52321953 G A PXDNL Missense_Mutation p.A744V 0.16 deleterious(0) probably_damaging(0.996) TCGA-HF-7132-01 8 55533979 55533979 C - RP1 Frame_Shift_Del p.P153Hfs*4 0.10 TCGA-HF-7132-01 8 55539117 55539117 C A RP1 Missense_Mutation p.A892E 0.19 tolerated(0.33) benign(0.004) TCGA-HF-7132-01 8 59750746 59750746 C T TOX Missense_Mutation p.R273H 0.13 deleterious(0) probably_damaging(0.996) TCGA-HF-7132-01 8 61769061 61769061 G A CHD7 Missense_Mutation p.E2408K 0.09 possibly_damaging(0.541) TCGA-HF-7132-01 8 6914177 6914177 G T DEFA5 Missense_Mutation p.L15M 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-HF-7132-01 8 69633596 69633597 - T C8orf34 Frame_Shift_Ins p.S444Ffs*6 0.14 TCGA-HF-7132-01 8 71071820 71071820 A G NCOA2 Silent p.A348A 0.08 TCGA-HF-7132-01 8 72935321 72935321 T - TRPA1 Frame_Shift_Del p.K1060Nfs*8 0.11 TCGA-HF-7132-01 8 74894588 74894588 G A TMEM70 3'UTR 0.12 TCGA-HF-7132-01 8 89128759 89128759 G A MMP16 Missense_Mutation p.R354C 0.08 deleterious(0.01) probably_damaging(1) TCGA-HF-7132-01 8 90993676 90993676 T - NBN Frame_Shift_Del p.M83Cfs*9 0.14 TCGA-HF-7132-01 8 91094854 91094854 G A CALB1 Silent p.D24D 0.12 TCGA-HF-7132-01 8 94805495 94805495 C T TMEM67 Missense_Mutation p.R549C 0.11 deleterious(0) probably_damaging(0.996) TCGA-HF-7132-01 8 94808178 94808178 G A TMEM67 Missense_Mutation p.R608H 0.16 tolerated(0.17) possibly_damaging(0.463) TCGA-HF-7132-01 8 98289649 98289649 G A TSPYL5 Missense_Mutation p.R142C 0.12 tolerated(0.06) probably_damaging(0.959) TCGA-HF-7132-01 9 100983199 100983199 C T TBC1D2 Silent p.T430T 0.12 TCGA-HF-7132-01 9 103070934 103070934 C T TEX10 Silent p.T771T 0.25 TCGA-HF-7132-01 9 107555572 107555572 C T ABCA1 Missense_Mutation p.R1839H 0.19 tolerated(0.55) possibly_damaging(0.82) TCGA-HF-7132-01 9 107583747 107583747 C T ABCA1 Missense_Mutation p.A957T 0.28 deleterious(0) probably_damaging(1) TCGA-HF-7132-01 9 109687968 109687968 C - ZNF462 Frame_Shift_Del p.T592Nfs*21 0.28 TCGA-HF-7132-01 9 109689704 109689704 G A ZNF462 Missense_Mutation p.A1171T 0.26 benign(0.112) TCGA-HF-7132-01 9 111698719 111698719 T C FAM206A Splice_Site p.X87_splice 0.24 TCGA-HF-7132-01 9 114691946 114691946 C T UGCG Missense_Mutation p.A242V 0.29 tolerated(0.11) possibly_damaging(0.581) TCGA-HF-7132-01 9 114825301 114825301 G A SUSD1 Missense_Mutation p.P589L 0.25 deleterious(0.03) probably_damaging(0.982) TCGA-HF-7132-01 9 116038945 116038946 - T PRPF4 Frame_Shift_Ins p.L51Ffs*7 0.21 TCGA-HF-7132-01 9 124910470 124910470 C T NDUFA8 Missense_Mutation p.R101H 0.23 deleterious(0) probably_damaging(0.999) TCGA-HF-7132-01 9 125141077 125141077 C - PTGS1 Frame_Shift_Del p.T128Pfs*17 0.20 TCGA-HF-7132-01 9 125562441 125562441 G A OR1K1 Missense_Mutation p.V14I 0.26 tolerated(0.62) benign(0) TCGA-HF-7132-01 9 127911974 127911974 G A PPP6C Missense_Mutation p.T336M 0.15 tolerated(0.1) benign(0.04) TCGA-HF-7132-01 9 130496636 130496636 A G TOR2A Missense_Mutation p.V120A 0.10 deleterious(0) probably_damaging(0.993) TCGA-HF-7132-01 9 130569280 130569280 C T FPGS Missense_Mutation p.R139W 0.08 deleterious(0) probably_damaging(1) TCGA-HF-7132-01 9 130829150 130829150 G A NAIF1 Silent p.T77T 0.19 TCGA-HF-7132-01 9 131117710 131117710 T C SLC27A4 Missense_Mutation p.L499P 0.34 deleterious(0) possibly_damaging(0.88) TCGA-HF-7132-01 9 131765224 131765224 C T NUP188 Silent p.F1422F 0.13 TCGA-HF-7132-01 9 131768861 131768861 G A NUP188 Silent p.P1718P 0.21 TCGA-HF-7132-01 9 131873258 131873258 G A PPP2R4 5'Flank 0.13 TCGA-HF-7132-01 9 133942350 133942350 G A LAMC3 Missense_Mutation p.R784Q 0.07 tolerated(0.06) benign(0.135) TCGA-HF-7132-01 9 134455666 134455666 G A RAPGEF1 Missense_Mutation p.R1041C 0.19 deleterious(0) probably_damaging(0.996) TCGA-HF-7132-01 9 135939797 135939797 G A CEL Missense_Mutation p.A28T 0.19 tolerated(0.26) benign(0.004) TCGA-HF-7132-01 9 136899859 136899859 C T BRD3 Missense_Mutation p.G677R 0.33 deleterious(0) probably_damaging(0.997) TCGA-HF-7132-01 9 138713788 138713788 G A CAMSAP1 Missense_Mutation p.R907C 0.04 deleterious(0) probably_damaging(1) TCGA-HF-7132-01 9 138825253 138825253 C T UBAC1 Missense_Mutation p.R404H 0.26 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-HF-7132-01 9 139341370 139341370 A C SEC16A Silent p.T2243T 0.23 TCGA-HF-7132-01 9 139903997 139903997 G A ABCA2 Missense_Mutation p.H2244Y 0.23 deleterious(0) probably_damaging(0.995) TCGA-HF-7132-01 9 139929460 139929461 - G C9orf139 Frame_Shift_Ins p.R179Qfs*45 0.23 TCGA-HF-7132-01 9 140161507 140161507 T C NELFB Missense_Mutation p.Y403H 0.38 tolerated(0.61) possibly_damaging(0.663) TCGA-HF-7132-01 9 140332630 140332630 G T ENTPD8 Silent p.L36L 0.28 TCGA-HF-7132-01 9 140417285 140417285 C T PNPLA7 Missense_Mutation p.V258I 0.25 deleterious(0.04) probably_damaging(0.999) TCGA-HF-7132-01 9 140777293 140777293 G A CACNA1B Missense_Mutation p.R163Q 0.10 deleterious(0) benign(0.16) TCGA-HF-7132-01 9 15846708 15846708 C T CCDC171 Silent p.S1092S 0.14 TCGA-HF-7132-01 9 19063047 19063047 T - HAUS6 Frame_Shift_Del p.S530Vfs*12 0.12 TCGA-HF-7132-01 9 2729526 2729526 T - KCNV2 Frame_Shift_Del p.F480Lfs*24 0.14 TCGA-HF-7132-01 9 2831330 2831330 G A KIAA0020 Silent p.H177H 0.14 TCGA-HF-7132-01 9 32487588 32487588 T - DDX58 Frame_Shift_Del p.N419Tfs*20 0.20 TCGA-HF-7132-01 9 3293131 3293131 C A RFX3 Missense_Mutation p.G226V 0.15 deleterious(0) probably_damaging(0.999) TCGA-HF-7132-01 9 33675379 33675379 C A PTENP1 RNA 0.29 TCGA-HF-7132-01 9 33675400 33675400 G A PTENP1 RNA 0.16 TCGA-HF-7132-01 9 34610959 34610959 C T RPP25L Missense_Mutation p.R112H 0.17 deleterious(0) probably_damaging(0.997) TCGA-HF-7132-01 9 35546877 35546877 A G RUSC2 Missense_Mutation p.D120G 0.16 tolerated(0.48) benign(0.005) TCGA-HF-7132-01 9 35547005 35547005 C T RUSC2 Missense_Mutation p.R163C 0.23 deleterious(0.01) possibly_damaging(0.614) TCGA-HF-7132-01 9 35555056 35555056 G - RUSC2 Splice_Site p.X673_splice 0.12 TCGA-HF-7132-01 9 35957249 35957249 G - OR2S2 Frame_Shift_Del p.L283Ffs*6 0.16 TCGA-HF-7132-01 9 37746671 37746671 G A FRMPD1 Missense_Mutation p.D1548N 0.17 deleterious(0.03) benign(0.204) TCGA-HF-7132-01 9 40773222 40773222 G A ZNF658 Missense_Mutation p.P685S 0.21 deleterious(0) probably_damaging(0.997) TCGA-HF-7132-01 9 5922885 5922885 T - KIAA2026 Frame_Shift_Del p.K1037Nfs*12 0.10 TCGA-HF-7132-01 9 70177147 70177147 G A FOXD4L5 Silent p.A279A 0.16 TCGA-HF-7132-01 9 70993145 70993145 A G PGM5 Missense_Mutation p.I98V 0.06 deleterious(0.01) possibly_damaging(0.573) TCGA-HF-7132-01 9 71863051 71863051 G A TJP2 Missense_Mutation p.A962T 0.22 tolerated(0.07) benign(0.323) TCGA-HF-7132-01 9 72659083 72659083 C G MAMDC2 5'UTR 0.17 TCGA-HF-7132-01 9 73254016 73254016 C T TRPM3 Missense_Mutation p.R514H 0.28 tolerated(0.42) probably_damaging(0.998) TCGA-HF-7132-01 9 77249562 77249562 A C RORB Missense_Mutation p.S37R 0.25 deleterious(0) probably_damaging(0.999) TCGA-HF-7132-01 9 79328528 79328528 G A PRUNE2 Missense_Mutation p.P289L 0.21 deleterious(0.01) possibly_damaging(0.877) TCGA-HF-7132-01 9 82333695 82333695 G A TLE4 Missense_Mutation p.D467N 0.22 deleterious(0.01) benign(0.044) TCGA-HF-7132-01 9 84226807 84226807 G A TLE1 Silent p.H377H 0.30 TCGA-HF-7132-01 9 85637259 85637259 G A RASEF Missense_Mutation p.R221W 0.18 deleterious(0) probably_damaging(0.947) TCGA-HF-7132-01 9 90535982 90535982 C T SPATA31C1 RNA 0.05 TCGA-HF-7132-01 9 95599959 95599959 C T ANKRD19P RNA 0.43 TCGA-HF-7132-01 9 97933362 97933362 G A FANCC Nonsense_Mutation p.R174* 0.24 TCGA-HF-7132-01 X 100871447 100871447 T C ARMCX6 Missense_Mutation p.E55G 0.37 tolerated(0.06) possibly_damaging(0.722) TCGA-HF-7132-01 X 101971622 101971622 C T GPRASP2 Missense_Mutation p.R609W 0.39 deleterious(0) probably_damaging(0.995) TCGA-HF-7132-01 X 107320332 107320332 C T VSIG1 Silent p.D331D 0.33 TCGA-HF-7132-01 X 111698774 111698774 G A ZCCHC16 Missense_Mutation p.R273H 0.20 tolerated(0.29) benign(0.019) TCGA-HF-7132-01 X 115590132 115590132 A - SLC6A14 3'UTR 0.17 TCGA-HF-7132-01 X 117959606 117959607 - T ZCCHC12 Frame_Shift_Ins p.N136* 0.31 TCGA-HF-7132-01 X 122799589 122799589 G A THOC2 Silent p.D430D 0.30 TCGA-HF-7132-01 X 128615123 128615123 G A SMARCA1 Missense_Mutation p.R753C 0.32 deleterious(0) probably_damaging(0.995) TCGA-HF-7132-01 X 128925043 128925043 G A SASH3 Missense_Mutation p.R143H 0.40 tolerated(0.07) possibly_damaging(0.845) TCGA-HF-7132-01 X 12937805 12937805 G A TLR8 Missense_Mutation p.V216M 0.34 deleterious(0) probably_damaging(0.994) TCGA-HF-7132-01 X 138644077 138644078 - G F9 Frame_Shift_Ins p.P414Tfs*5 0.22 TCGA-HF-7132-01 X 138713596 138713596 G A MCF2 Silent p.G142G 0.39 TCGA-HF-7132-01 X 151562923 151562923 A G GABRA3 Intron 0.40 TCGA-HF-7132-01 X 152823744 152823744 G T ATP2B3 Missense_Mutation p.G870C 0.11 deleterious(0) probably_damaging(1) TCGA-HF-7132-01 X 153171113 153171113 G T AVPR2 Silent p.V51V 0.59 TCGA-HF-7132-01 X 154157611 154157611 G A F8 Missense_Mutation p.A1485V 0.23 tolerated(0.08) possibly_damaging(0.448) TCGA-HF-7132-01 X 18622777 18622777 A G CDKL5 Missense_Mutation p.D578G 0.39 deleterious_low_confidence(0.03) possibly_damaging(0.483) TCGA-HF-7132-01 X 19049103 19049103 T C GPR64 Silent p.S119S 0.13 TCGA-HF-7132-01 X 22115094 22115094 C T PHEX Nonsense_Mutation p.R291* 0.39 TCGA-HF-7132-01 X 32366534 32366534 T C DMD Missense_Mutation p.N1813D 0.35 possibly_damaging(0.486) TCGA-HF-7132-01 X 38008990 38008990 C T SRPX Missense_Mutation p.E457K 0.41 deleterious(0.03) probably_damaging(0.994) TCGA-HF-7132-01 X 41586424 41586424 T C GPR82 Missense_Mutation p.S49P 0.34 tolerated(0.29) benign(0.004) TCGA-HF-7132-01 X 47308259 47308259 T - ZNF41 Frame_Shift_Del p.S304Afs*71 0.18 TCGA-HF-7132-01 X 48650295 48650295 G - GATA1 Frame_Shift_Del p.G90Afs*47 0.30 TCGA-HF-7132-01 X 49066136 49066136 C A CACNA1F Missense_Mutation p.G1603W 0.50 deleterious(0) probably_damaging(0.961) TCGA-HF-7132-01 X 51076039 51076039 G A NUDT10 Silent p.G74G 0.23 TCGA-HF-7132-01 X 51643310 51643311 - C MAGED1 Frame_Shift_Ins p.E685Gfs*3 0.28 TCGA-HF-7132-01 X 55479394 55479394 A G MAGEH1 Missense_Mutation p.D196G 0.44 deleterious_low_confidence(0) possibly_damaging(0.626) TCGA-HF-7132-01 X 63444967 63444967 G A ASB12 Silent p.A188A 0.65 TCGA-HF-7132-01 X 69673549 69673550 GA - DLG3 Frame_Shift_Del p.E404Gfs*17 0.36 TCGA-HF-7132-01 X 70147355 70147355 C T SLC7A3 Missense_Mutation p.V388M 0.36 tolerated(0.36) benign(0.271) TCGA-HF-7132-01 X 70329102 70329102 G A IL2RG Missense_Mutation p.H245Y 0.23 tolerated(1) benign(0.001) TCGA-HF-7132-01 X 73045094 73045094 C T XIST RNA 0.33 TCGA-HF-7132-01 X 84526109 84526109 A G ZNF711 Missense_Mutation p.K521E 0.21 deleterious(0.01) probably_damaging(0.988) TCGA-HF-7132-01 X 99551849 99551849 C T PCDH19 Missense_Mutation p.R958Q 0.29 tolerated(0.32) benign(0.011) TCGA-HF-7132-01 X 99920543 99920543 C T SRPX2 Missense_Mutation p.R224W 0.54 deleterious(0) probably_damaging(0.991) TCGA-HF-7132-01 Y 14968300 14968300 G A USP9Y Missense_Mutation p.R2367K 0.24 tolerated(0.06) benign(0.019) TCGA-HF-7132-01 Y 16941639 16941639 G A NLGN4Y Missense_Mutation p.G281S 0.17 deleterious(0) probably_damaging(0.999) TCGA-HF-7133-01 10 127525345 127525345 C T DHX32 Missense_Mutation p.D715N 0.25 tolerated(0.62) benign(0.002) TCGA-HF-7133-01 10 134459401 134459401 G A INPP5A Missense_Mutation p.M49I 0.29 tolerated(1) benign(0.001) TCGA-HF-7133-01 10 49654578 49654578 C T ARHGAP22 Missense_Mutation p.M667I 0.25 deleterious(0) probably_damaging(0.995) TCGA-HF-7133-01 11 1159361 1159361 C T MUC5AC Silent p.D446D 0.37 TCGA-HF-7133-01 11 131781289 131781289 G A NTM 5'Flank 0.32 TCGA-HF-7133-01 11 21135238 21135238 T C NELL1 Silent p.R468R 0.18 TCGA-HF-7133-01 11 4389175 4389175 C A OR52B4 Missense_Mutation p.L117F 0.32 deleterious(0) probably_damaging(0.999) TCGA-HF-7133-01 11 55135685 55135685 T A OR4A15 Missense_Mutation p.M109K 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.543) TCGA-HF-7133-01 11 61404639 61404639 C T RPLP0P2 RNA 0.19 TCGA-HF-7133-01 11 67926371 67926371 T C SUV420H1 Missense_Mutation p.K481R 0.22 tolerated(0.11) probably_damaging(0.998) TCGA-HF-7133-01 11 67926536 67926536 G - SUV420H1 Frame_Shift_Del p.S426Yfs*4 0.32 TCGA-HF-7133-01 12 10569320 10569320 C T KLRC3 Missense_Mutation p.R178H 0.18 deleterious(0.04) possibly_damaging(0.521) TCGA-HF-7133-01 12 21205043 21205043 A T SLCO1B7 Nonsense_Mutation p.R402* 0.23 TCGA-HF-7133-01 12 22061124 22061124 G A ABCC9 Missense_Mutation p.L448F 0.23 deleterious(0) probably_damaging(0.993) TCGA-HF-7133-01 12 7293961 7293961 C T CLSTN3 Nonsense_Mutation p.R483* 0.22 TCGA-HF-7133-01 12 77254166 77254166 A G CSRP2 Silent p.N103N 0.17 TCGA-HF-7133-01 12 96387251 96387251 G A HAL Silent p.N189N 0.31 TCGA-HF-7133-01 14 101492097 101492097 C T MIR323A RNA 0.24 TCGA-HF-7133-01 14 24542739 24542739 C T CPNE6 Missense_Mutation p.S67F 0.26 deleterious(0.01) benign(0.281) TCGA-HF-7133-01 14 51375622 51375622 A - PYGL Frame_Shift_Del p.I743Mfs*46 0.15 TCGA-HF-7133-01 14 60097257 60097257 C A RTN1 Intron 0.13 TCGA-HF-7133-01 15 100801697 100801697 C T ADAMTS17 Missense_Mutation p.V340M 0.19 deleterious(0.01) benign(0.438) TCGA-HF-7133-01 15 100942884 100942884 C G CERS3 3'UTR 0.26 TCGA-HF-7133-01 15 23444075 23444075 G A AC100757.1 5'Flank 0.23 TCGA-HF-7133-01 15 28459349 28459349 G A HERC2 Missense_Mutation p.A2143V 0.35 possibly_damaging(0.643) TCGA-HF-7133-01 15 83345298 83345298 G A AP3B2 Missense_Mutation p.A527V 0.24 tolerated(0.05) possibly_damaging(0.456) TCGA-HF-7133-01 16 30537361 30537361 C G ZNF768 Missense_Mutation p.E34Q 0.28 deleterious_low_confidence(0) benign(0.029) TCGA-HF-7133-01 16 4882012 4882012 G A GLYR1 Missense_Mutation p.R169W 0.38 deleterious(0.02) benign(0.001) TCGA-HF-7133-01 17 10293748 10293748 T C MYH8 3'UTR 0.35 TCGA-HF-7133-01 17 27936185 27936185 G A ANKRD13B Missense_Mutation p.R216Q 0.29 tolerated(0.5) benign(0.019) TCGA-HF-7133-01 17 57744325 57744325 C G CLTC Missense_Mutation p.F705L 0.28 deleterious(0.01) possibly_damaging(0.702) TCGA-HF-7133-01 18 33077741 33077741 C T INO80C Missense_Mutation p.S33N 0.15 tolerated_low_confidence(0.06) benign(0.398) TCGA-HF-7133-01 19 42546812 42546812 G A GRIK5 Silent p.A455A 0.18 TCGA-HF-7133-01 19 6495529 6495529 G A TUBB4A Silent p.D327D 0.59 TCGA-HF-7133-01 1 103444943 103444943 C A COL11A1 Missense_Mutation p.A869S 0.15 unknown(0) TCGA-HF-7133-01 1 107691253 107691253 G A NTNG1 Nonsense_Mutation p.W13* 0.27 TCGA-HF-7133-01 1 150974704 150974704 G A FAM63A Silent p.T178T 0.41 TCGA-HF-7133-01 1 152277360 152277360 C A FLG Silent p.G3334G 0.17 TCGA-HF-7133-01 1 152277694 152277694 C A FLG Missense_Mutation p.G3223V 0.21 unknown(0) TCGA-HF-7133-01 1 156640628 156640628 C G NES Missense_Mutation p.E1118Q 0.21 deleterious(0.03) probably_damaging(0.948) TCGA-HF-7133-01 1 16531296 16531296 A C ARHGEF19 Missense_Mutation p.L622R 0.29 deleterious(0.01) probably_damaging(0.994) TCGA-HF-7133-01 1 169096459 169096462 TAGA - ATP1B1 Splice_Site p.X128_splice 0.33 TCGA-HF-7133-01 1 182026767 182026767 G A ZNF648 Missense_Mutation p.P127S 0.19 tolerated(0.18) benign(0.012) TCGA-HF-7133-01 1 209880290 209880290 G A HSD11B1 Missense_Mutation p.G112R 0.23 deleterious(0) probably_damaging(0.918) TCGA-HF-7133-01 1 34128512 34128512 C T CSMD2 Silent p.Q1371Q 0.22 TCGA-HF-7133-01 1 49056558 49056558 T C AGBL4 Missense_Mutation p.R351G 0.17 deleterious(0) possibly_damaging(0.883) TCGA-HF-7133-01 1 9117573 9117573 G A SLC2A5 Missense_Mutation p.S76F 0.32 deleterious(0.01) probably_damaging(1) TCGA-HF-7133-01 20 31692670 31692670 G A BPIFB4 Missense_Mutation p.A579T 0.24 tolerated(0.08) benign(0.005) TCGA-HF-7133-01 20 42979392 42979392 G A R3HDML Missense_Mutation p.C241Y 0.12 deleterious(0) probably_damaging(1) TCGA-HF-7133-01 20 60770905 60770905 C T MTG2 Silent p.N84N 0.20 TCGA-HF-7133-01 20 60773769 60773769 C T MTG2 Missense_Mutation p.A183V 0.07 tolerated(0.08) possibly_damaging(0.612) TCGA-HF-7133-01 22 26868841 26868841 C A HPS4 Missense_Mutation p.G114V 0.36 deleterious(0) probably_damaging(0.999) TCGA-HF-7133-01 22 50216631 50216631 C T BRD1 Silent p.P445P 0.34 TCGA-HF-7133-01 2 1647316 1647316 G A PXDN Missense_Mutation p.P1259L 0.18 deleterious(0.02) benign(0.159) TCGA-HF-7133-01 2 182322539 182322539 G T ITGA4 Missense_Mutation p.G53V 0.37 deleterious(0) probably_damaging(0.971) TCGA-HF-7133-01 2 203693599 203693599 G C ICA1L Missense_Mutation p.S45C 0.33 deleterious(0) probably_damaging(1) TCGA-HF-7133-01 2 233274532 233274532 C A ALPPL2 Missense_Mutation p.P517T 0.39 tolerated(0.46) unknown(0) TCGA-HF-7133-01 2 233323432 233323432 G A ALPI Missense_Mutation p.R425Q 0.52 deleterious(0) possibly_damaging(0.831) TCGA-HF-7133-01 2 80529981 80529981 C T LRRTM1 Missense_Mutation p.V322M 0.20 deleterious(0) possibly_damaging(0.542) TCGA-HF-7133-01 2 8873723 8873723 C T KIDINS220 Missense_Mutation p.G1302S 0.29 tolerated_low_confidence(0.47) benign(0.002) TCGA-HF-7133-01 3 167223127 167223127 G T WDR49 Missense_Mutation p.P599H 0.24 tolerated(0.55) benign(0.003) TCGA-HF-7133-01 3 50147860 50147860 G A RBM5 Missense_Mutation p.A443T 0.15 tolerated(0.47) benign(0.002) TCGA-HF-7133-01 3 58487062 58487062 C T KCTD6 Silent p.I139I 0.24 TCGA-HF-7133-01 4 57221393 57221393 G A AASDH Missense_Mutation p.A353V 0.36 deleterious(0) probably_damaging(1) TCGA-HF-7133-01 5 140554549 140554549 G T PCDHB7 Silent p.L711L 0.08 TCGA-HF-7133-01 5 140558070 140558070 C T PCDHB8 Missense_Mutation p.A152V 0.07 tolerated_low_confidence(1) benign(0.001) TCGA-HF-7133-01 5 145980014 145980014 T C PPP2R2B Missense_Mutation p.E270G 0.34 deleterious(0.03) benign(0.084) TCGA-HF-7133-01 5 169445986 169445986 C T DOCK2 Silent p.I1085I 0.30 TCGA-HF-7133-01 5 195112 195112 G A LRRC14B Missense_Mutation p.G397R 0.30 deleterious(0) probably_damaging(0.999) TCGA-HF-7133-01 5 32088031 32088031 G A PDZD2 Missense_Mutation p.A1493T 0.23 deleterious(0.01) benign(0.022) TCGA-HF-7133-01 5 59983029 59983029 C T DEPDC1B Missense_Mutation p.R25H 0.34 deleterious(0) probably_damaging(0.998) TCGA-HF-7133-01 5 71495792 71495792 C T MAP1B Missense_Mutation p.P2204S 0.22 possibly_damaging(0.658) TCGA-HF-7133-01 5 78340265 78340265 G A DMGDH Nonsense_Mutation p.R286* 0.20 TCGA-HF-7133-01 6 146755495 146755495 G A GRM1 Missense_Mutation p.A1050T 0.29 tolerated_low_confidence(0.26) benign(0.003) TCGA-HF-7133-01 6 150158579 150158579 G A LRP11 Missense_Mutation p.R312C 0.29 deleterious(0) probably_damaging(1) TCGA-HF-7133-01 6 26217505 26217505 G C HIST1H2AE Silent p.V101V 0.24 TCGA-HF-7133-01 6 31614268 31614268 A G BAG6 Missense_Mutation p.L280P 0.24 deleterious(0) probably_damaging(0.998) TCGA-HF-7133-01 6 43305127 43305127 C T ZNF318 Silent p.L2203L 0.22 TCGA-HF-7133-01 6 56416992 56416992 T G DST Missense_Mutation p.N2910T 0.33 benign(0.038) TCGA-HF-7133-01 7 100086807 100086807 C T NYAP1 Missense_Mutation p.T488M 0.27 deleterious(0.01) benign(0.027) TCGA-HF-7133-01 7 150171184 150171184 G A GIMAP8 Missense_Mutation p.R256H 0.25 tolerated(0.4) benign(0.102) TCGA-HF-7133-01 7 4088991 4088991 C T SDK1 Missense_Mutation p.P872S 0.20 deleterious(0.01) possibly_damaging(0.838) TCGA-HF-7133-01 7 99091995 99091996 AG - ZNF394 Frame_Shift_Del p.S281* 0.26 TCGA-HF-7133-01 7 99757823 99757823 G A GAL3ST4 Missense_Mutation p.R397W 0.25 deleterious(0) probably_damaging(0.999) TCGA-HF-7133-01 8 108972950 108972950 C A RSPO2 Nonsense_Mutation p.E127* 0.20 TCGA-HF-7133-01 8 124989793 124989793 T G FER1L6 Missense_Mutation p.L336R 0.24 deleterious(0) probably_damaging(0.99) TCGA-HF-7133-01 8 133492525 133492525 G A KCNQ3 Silent p.I85I 0.28 TCGA-HF-7133-01 8 133759333 133759333 G A TMEM71 Intron 0.19 TCGA-HF-7133-01 8 143957257 143957257 G A CYP11B1 Missense_Mutation p.A331V 0.28 deleterious(0) probably_damaging(0.986) TCGA-HF-7133-01 8 33454943 33454943 T C DUSP26 Missense_Mutation p.T31A 0.26 tolerated(1) benign(0) TCGA-HF-7133-01 9 138671263 138671263 A G KCNT1 Missense_Mutation p.M930V 0.10 tolerated(0.07) benign(0.196) TCGA-HF-7133-01 9 72874089 72874089 G A SMC5 Missense_Mutation p.R32K 0.40 tolerated_low_confidence(0.18) benign(0.002) TCGA-HF-7133-01 X 55513295 55513295 A T USP51 Nonsense_Mutation p.L693* 0.30 TCGA-HF-7134-01 10 18280188 18280188 T G SLC39A12 Missense_Mutation p.L460V 0.27 tolerated(0.05) possibly_damaging(0.764) TCGA-HF-7134-01 10 21074831 21074831 C A NEBL Missense_Mutation p.D964Y 0.24 deleterious(0) probably_damaging(1) TCGA-HF-7134-01 10 21806719 21806719 C T SKIDA1 Silent p.V11V 0.36 TCGA-HF-7134-01 10 37486383 37486383 G A ANKRD30A Silent p.L841L 0.31 TCGA-HF-7134-01 10 45799787 45799787 G A OR13A1 Silent p.T28T 0.31 TCGA-HF-7134-01 10 50122214 50122214 G T LRRC18 5'UTR 0.33 TCGA-HF-7134-01 10 60577429 60577429 C A BICC1 Missense_Mutation p.L881I 0.32 tolerated(0.06) probably_damaging(0.999) TCGA-HF-7134-01 10 68940150 68940150 G C CTNNA3 Missense_Mutation p.H324Q 0.45 deleterious(0.01) possibly_damaging(0.537) TCGA-HF-7134-01 10 73326604 73326604 G A CDH23 Missense_Mutation p.A179T 0.33 tolerated(0.83) benign(0.004) TCGA-HF-7134-01 10 81706392 81706392 T C SFTPD Silent p.A8A 0.29 TCGA-HF-7134-01 11 102220610 102220611 - T BIRC2 Frame_Shift_Ins p.G12Rfs*8 0.26 TCGA-HF-7134-01 11 107975128 107975128 C T CUL5 3'UTR 0.36 TCGA-HF-7134-01 11 111750326 111750326 C T C11orf1 Silent p.F14F 0.28 TCGA-HF-7134-01 11 11374473 11374473 A C CSNK2A3 Missense_Mutation p.V65G 0.22 deleterious(0) possibly_damaging(0.595) TCGA-HF-7134-01 11 114569220 114569220 C A NXPE2 Missense_Mutation p.P196T 0.24 deleterious(0) probably_damaging(0.997) TCGA-HF-7134-01 11 117077825 117077825 T G PCSK7 Missense_Mutation p.Y613S 0.19 deleterious(0) probably_damaging(0.934) TCGA-HF-7134-01 11 119185697 119185697 C G MCAM Missense_Mutation p.Q82H 0.35 tolerated(0.55) benign(0.052) TCGA-HF-7134-01 11 119986103 119986103 C T TRIM29 Silent p.R549R 0.33 TCGA-HF-7134-01 11 121037375 121037375 T G TECTA Silent p.G1824G 0.28 TCGA-HF-7134-01 11 122805312 122805312 A G C11orf63 Missense_Mutation p.Q388R 0.45 tolerated(0.06) benign(0.008) TCGA-HF-7134-01 11 14515848 14515848 A G COPB1 Silent p.L77L 0.35 TCGA-HF-7134-01 11 224192 224192 G A SIRT3 Silent p.G285G 0.42 TCGA-HF-7134-01 11 33090345 33090345 G A TCP11L1 Missense_Mutation p.V423M 0.34 tolerated(0.26) possibly_damaging(0.849) TCGA-HF-7134-01 11 33640088 33640088 G T KIAA1549L Missense_Mutation p.M1466I 0.14 tolerated(0.33) benign(0.077) TCGA-HF-7134-01 11 34916581 34916581 C T APIP Missense_Mutation p.G45E 0.34 deleterious(0) probably_damaging(0.978) TCGA-HF-7134-01 11 44941380 44941380 G A TSPAN18 Missense_Mutation p.G149R 0.34 deleterious(0) probably_damaging(1) TCGA-HF-7134-01 11 44959866 44959866 C T TP53I11 Silent p.P7P 0.26 TCGA-HF-7134-01 11 45880336 45880336 G A CRY2 Missense_Mutation p.E148K 0.35 tolerated(0.27) benign(0.141) TCGA-HF-7134-01 11 4608954 4608954 A C OR52I2 Missense_Mutation p.Q304H 0.34 tolerated(1) probably_damaging(0.997) TCGA-HF-7134-01 11 4945136 4945136 T C OR51G1 Missense_Mutation p.K145R 0.19 tolerated(0.23) benign(0.005) TCGA-HF-7134-01 11 55797923 55797923 C A OR5AS1 Missense_Mutation p.T10N 0.57 tolerated(0.05) benign(0.003) TCGA-HF-7134-01 11 55798204 55798204 T G OR5AS1 Missense_Mutation p.F104V 0.71 deleterious(0.01) probably_damaging(0.997) TCGA-HF-7134-01 11 56000235 56000235 C G OR5T2 Missense_Mutation p.A143P 0.45 deleterious(0.01) possibly_damaging(0.707) TCGA-HF-7134-01 11 58207450 58207450 A C OR5B12 Missense_Mutation p.F59V 0.38 deleterious_low_confidence(0.03) benign(0.064) TCGA-HF-7134-01 11 65770753 65770753 T C BANF1 Missense_Mutation p.V11A 0.46 deleterious(0.01) possibly_damaging(0.5) TCGA-HF-7134-01 11 66318740 66318740 C T ACTN3 3'UTR 0.15 TCGA-HF-7134-01 11 6789658 6789658 C A OR2AG2 Silent p.L177L 0.37 TCGA-HF-7134-01 11 6913644 6913644 C T OR2D2 Missense_Mutation p.V30I 0.27 tolerated(0.25) benign(0.003) TCGA-HF-7134-01 11 73101966 73101966 G T RELT Missense_Mutation p.G96V 0.41 deleterious(0) probably_damaging(0.911) TCGA-HF-7134-01 11 74168370 74168370 G A KCNE3 Missense_Mutation p.T80I 0.37 deleterious(0) possibly_damaging(0.691) TCGA-HF-7134-01 11 78383148 78383148 T C TENM4 Missense_Mutation p.D1908G 0.32 deleterious(0) probably_damaging(0.998) TCGA-HF-7134-01 11 82880354 82880354 A G PCF11 Missense_Mutation p.I993V 0.41 tolerated(0.56) benign(0) TCGA-HF-7134-01 11 84996380 84996380 G T DLG2 Missense_Mutation p.L24I 0.45 deleterious_low_confidence(0.01) benign(0.017) TCGA-HF-7134-01 11 92088479 92088479 T C FAT3 Silent p.A1067A 0.37 TCGA-HF-7134-01 12 10313058 10313058 A C OLR1 Missense_Mutation p.F190V 0.42 deleterious(0) probably_damaging(0.986) TCGA-HF-7134-01 12 108589684 108589684 C G WSCD2 Silent p.L25L 0.35 TCGA-HF-7134-01 12 108589709 108589709 T G WSCD2 Missense_Mutation p.F34V 0.38 deleterious(0.01) probably_damaging(0.998) TCGA-HF-7134-01 12 121712174 121712174 G A CAMKK2 Silent p.F52F 0.36 TCGA-HF-7134-01 12 122380489 122380489 A G WDR66 Missense_Mutation p.M350V 0.24 tolerated(0.37) benign(0) TCGA-HF-7134-01 12 133360752 133360752 C T GOLGA3 Missense_Mutation p.E1089K 0.44 deleterious(0) probably_damaging(0.999) TCGA-HF-7134-01 12 22078957 22078957 C T ABCC9 Missense_Mutation p.V109M 0.26 tolerated(0.16) benign(0.01) TCGA-HF-7134-01 12 27235169 27235169 A C C12orf71 Missense_Mutation p.F83C 0.29 deleterious(0.02) benign(0.313) TCGA-HF-7134-01 12 28605524 28605524 A C CCDC91 Missense_Mutation p.K346N 0.27 deleterious(0.01) possibly_damaging(0.843) TCGA-HF-7134-01 12 41961639 41961639 T C PDZRN4 Silent p.L508L 0.39 TCGA-HF-7134-01 12 432348 432348 G A KDM5A Silent p.L725L 0.34 TCGA-HF-7134-01 12 52162919 52162919 G A SCN8A Missense_Mutation p.D1058N 0.40 tolerated(0.52) benign(0.009) TCGA-HF-7134-01 12 53512991 53512991 C T SOAT2 Silent p.F331F 0.29 TCGA-HF-7134-01 12 88472973 88472973 C T CEP290 Missense_Mutation p.E1754K 0.41 possibly_damaging(0.693) TCGA-HF-7134-01 12 9356546 9356546 G T PZP Missense_Mutation p.Q29K 0.30 tolerated(0.12) benign(0.038) TCGA-HF-7134-01 13 102051457 102051457 A C NALCN Missense_Mutation p.S7R 0.24 deleterious(0) probably_damaging(0.957) TCGA-HF-7134-01 13 102231661 102231661 A C ITGBL1 Missense_Mutation p.N204H 0.35 tolerated(0.27) probably_damaging(1) TCGA-HF-7134-01 13 113333721 113333721 G A C13orf35 Missense_Mutation p.V10I 0.44 deleterious_low_confidence(0) benign(0.208) TCGA-HF-7134-01 13 19997247 19997247 A C TPTE2 Missense_Mutation p.I508M 0.48 tolerated(0.06) benign(0.147) TCGA-HF-7134-01 13 25670425 25670425 A C PABPC3 Missense_Mutation p.K30T 0.49 deleterious(0.04) possibly_damaging(0.575) TCGA-HF-7134-01 13 27333685 27333685 C T GPR12 Missense_Mutation p.G94S 0.21 deleterious(0.01) probably_damaging(1) TCGA-HF-7134-01 13 32776519 32776519 C A FRY Nonsense_Mutation p.Y1291* 0.24 TCGA-HF-7134-01 13 35770038 35770038 A T NBEA Missense_Mutation p.K1655N 0.26 tolerated_low_confidence(0.16) benign(0.007) TCGA-HF-7134-01 13 58207010 58207010 C T PCDH17 Silent p.A110A 0.19 TCGA-HF-7134-01 13 78477425 78477425 C A EDNRB Missense_Mutation p.V313F 0.18 tolerated(0.11) benign(0.059) TCGA-HF-7134-01 13 86368406 86368406 A C SLITRK6 Missense_Mutation p.F746L 0.59 tolerated(0.56) benign(0.015) TCGA-HF-7134-01 13 95822845 95822845 A G ABCC4 Silent p.L589L 0.24 TCGA-HF-7134-01 14 105409788 105409788 G A AHNAK2 Silent p.A4000A 0.39 TCGA-HF-7134-01 14 106174333 106174333 C G IGHA1 Silent p.L152L 0.36 TCGA-HF-7134-01 14 106320734 106320734 G A IGHM Missense_Mutation p.A359V 0.42 deleterious(0.02) possibly_damaging(0.66) TCGA-HF-7134-01 14 106321873 106321873 C T IGHM Missense_Mutation p.D121N 0.43 tolerated(0.08) benign(0.195) TCGA-HF-7134-01 14 106322270 106322270 C T IGHM Silent p.P18P 0.50 TCGA-HF-7134-01 14 106725262 106725262 G A IGHV3-23 Missense_Mutation p.T97M 0.24 tolerated_low_confidence(0.2) benign(0.052) TCGA-HF-7134-01 14 107169997 107169997 C T IGHV1-69 Silent p.T95T 0.22 TCGA-HF-7134-01 14 107170364 107170364 C A IGHV1-69 Missense_Mutation p.D2Y 0.16 deleterious(0) probably_damaging(0.994) TCGA-HF-7134-01 14 22471727 22471727 T G TRAV18 Silent p.T50T 0.50 TCGA-HF-7134-01 14 23884900 23884900 G A MYH7 Missense_Mutation p.R1699W 0.29 deleterious(0) probably_damaging(0.999) TCGA-HF-7134-01 14 23902875 23902875 G A MYH7 Missense_Mutation p.R23W 0.32 deleterious(0) probably_damaging(0.993) TCGA-HF-7134-01 14 34269604 34269604 C T NPAS3 Silent p.G697G 0.30 TCGA-HF-7134-01 14 61446243 61446243 G A TRMT5 Missense_Mutation p.R125C 0.30 deleterious(0) probably_damaging(0.917) TCGA-HF-7134-01 15 48426649 48426649 G A SLC24A5 Missense_Mutation p.G135R 0.24 deleterious(0) probably_damaging(0.996) TCGA-HF-7134-01 15 48633667 48633667 C T DUT Intron 0.22 TCGA-HF-7134-01 15 52536688 52536688 C T MYO5C Missense_Mutation p.R752Q 0.28 deleterious(0) probably_damaging(0.977) TCGA-HF-7134-01 15 54306146 54306146 C A UNC13C Nonsense_Mutation p.S349* 0.42 TCGA-HF-7134-01 15 75013664 75013664 C A CYP1A1 Splice_Site p.X348_splice 0.41 TCGA-HF-7134-01 15 78486305 78486305 A G ACSBG1 Missense_Mutation p.F171L 0.29 tolerated(0.12) benign(0.246) TCGA-HF-7134-01 15 90210173 90210173 G A PLIN1 Silent p.Y401Y 0.33 TCGA-HF-7134-01 15 91492615 91492615 T A UNC45A Missense_Mutation p.C650S 0.51 tolerated(0.14) benign(0.206) TCGA-HF-7134-01 16 31539797 31539797 G A AHSP Missense_Mutation p.V32I 0.39 tolerated(1) benign(0) TCGA-HF-7134-01 16 449632 449632 G A NME4 Nonsense_Mutation p.W111* 0.27 TCGA-HF-7134-01 16 55523720 55523720 C A MMP2 Silent p.G388G 0.46 TCGA-HF-7134-01 16 58538164 58538164 G A NDRG4 Silent p.S130S 0.48 TCGA-HF-7134-01 16 67292311 67292311 C T SLC9A5 Silent p.Y529Y 0.30 TCGA-HF-7134-01 16 76532568 76532568 G T CNTNAP4 Missense_Mutation p.G708V 0.30 deleterious(0) probably_damaging(1) TCGA-HF-7134-01 16 77401565 77401565 A G ADAMTS18 Missense_Mutation p.L184P 0.27 tolerated(0.21) benign(0.317) TCGA-HF-7134-01 16 88951469 88951469 G A CBFA2T3 Missense_Mutation p.R368C 0.25 deleterious(0) possibly_damaging(0.816) TCGA-HF-7134-01 17 10546195 10546195 G A MYH3 Missense_Mutation p.T510M 0.32 tolerated(0.08) benign(0.439) TCGA-HF-7134-01 17 3585237 3585237 G A P2RX5 Silent p.L339L 0.76 TCGA-HF-7134-01 17 36288260 36288260 A G TBC1D3F Missense_Mutation p.N116D 0.11 tolerated(0.67) probably_damaging(1) TCGA-HF-7134-01 17 48917415 48917415 C T WFIKKN2 Missense_Mutation p.R256W 0.74 deleterious(0) benign(0.006) TCGA-HF-7134-01 17 8138431 8138431 C T CTC1 Missense_Mutation p.R460H 0.44 tolerated(0.44) benign(0.033) TCGA-HF-7134-01 18 34297952 34297952 G A FHOD3 Silent p.Q722Q 0.33 TCGA-HF-7134-01 18 42532286 42532286 A G SETBP1 Missense_Mutation p.Y994C 0.31 deleterious(0) probably_damaging(0.999) TCGA-HF-7134-01 18 44013249 44013249 C T RNF165 Missense_Mutation p.P53L 0.28 deleterious_low_confidence(0.01) benign(0.105) TCGA-HF-7134-01 18 44579379 44579379 A G KATNAL2 Missense_Mutation p.Q12R 0.29 deleterious(0.02) possibly_damaging(0.558) TCGA-HF-7134-01 18 64172394 64172394 C G CDH19 Missense_Mutation p.E658D 0.34 tolerated(0.05) benign(0.119) TCGA-HF-7134-01 18 74611017 74611017 G T ZNF236 Missense_Mutation p.R576L 0.34 deleterious(0) probably_damaging(0.961) TCGA-HF-7134-01 19 14211688 14211688 G C PRKACA Nonsense_Mutation p.Y123* 0.30 TCGA-HF-7134-01 19 15514445 15514445 G A AKAP8L Missense_Mutation p.S68F 0.43 deleterious(0) benign(0.405) TCGA-HF-7134-01 19 22575670 22575670 T C ZNF98 Missense_Mutation p.R123G 0.27 deleterious(0.04) benign(0) TCGA-HF-7134-01 19 23318765 23318765 A T ZNF730 Missense_Mutation p.K49M 0.43 deleterious(0.01) probably_damaging(0.985) TCGA-HF-7134-01 19 2987154 2987154 G A TLE6 Nonsense_Mutation p.W153* 0.43 TCGA-HF-7134-01 19 3151732 3151732 C T GNA15 Silent p.T171T 0.28 TCGA-HF-7134-01 19 36349663 36349663 T G KIRREL2 Missense_Mutation p.V140G 0.36 tolerated(0.37) benign(0.198) TCGA-HF-7134-01 19 3767454 3767454 G A MRPL54 3'UTR 0.73 TCGA-HF-7134-01 19 3924658 3924658 C A ATCAY 3'UTR 0.29 TCGA-HF-7134-01 19 39329153 39329153 G A HNRNPL Missense_Mutation p.R481W 0.46 deleterious(0) probably_damaging(0.99) TCGA-HF-7134-01 19 42351523 42351523 C T DMRTC2 Silent p.G9G 0.28 TCGA-HF-7134-01 19 45493786 45493786 C T CLPTM1 Silent p.S422S 0.36 TCGA-HF-7134-01 19 48558299 48558299 C T PLA2G4C Missense_Mutation p.R432Q 0.32 deleterious(0.01) possibly_damaging(0.576) TCGA-HF-7134-01 19 48845855 48845855 C T TMEM143 Missense_Mutation p.D303N 0.29 tolerated(0.09) benign(0.418) TCGA-HF-7134-01 19 4947157 4947157 G A UHRF1 RNA 0.35 TCGA-HF-7134-01 19 50315901 50315901 C A FUZ Silent p.T68T 0.37 TCGA-HF-7134-01 19 51647694 51647694 C T SIGLEC7 Silent p.P155P 0.35 TCGA-HF-7134-01 19 54973332 54973332 G A LENG9 Silent p.L482L 0.42 TCGA-HF-7134-01 19 56443500 56443500 A T NLRP13 Missense_Mutation p.L60M 0.34 tolerated(0.09) probably_damaging(0.999) TCGA-HF-7134-01 19 57910652 57910652 G A ZNF548 Missense_Mutation p.G345R 0.27 deleterious(0.02) probably_damaging(1) TCGA-HF-7134-01 19 58549267 58549267 G T ZSCAN1 Missense_Mutation p.E21D 0.59 tolerated(0.05) benign(0.043) TCGA-HF-7134-01 19 7976183 7976183 C T MAP2K7 Missense_Mutation p.R302W 0.44 deleterious(0) probably_damaging(0.999) TCGA-HF-7134-01 1 118693873 118693873 C T SPAG17 Silent p.S69S 0.29 TCGA-HF-7134-01 1 12942077 12942077 T G PRAMEF4 Missense_Mutation p.K158T 0.29 tolerated(0.09) possibly_damaging(0.864) TCGA-HF-7134-01 1 145075705 145075705 C T PDE4DIP Missense_Mutation p.R53H 0.08 tolerated_low_confidence(0.44) probably_damaging(0.928) TCGA-HF-7134-01 1 152187501 152187501 C A HRNR Missense_Mutation p.G2202W 0.04 unknown(0) TCGA-HF-7134-01 1 152284691 152284691 T G FLG Missense_Mutation p.S891R 0.63 probably_damaging(0.995) TCGA-HF-7134-01 1 155019789 155019789 G A DCST1 Splice_Site p.X538_splice 0.15 TCGA-HF-7134-01 1 155289612 155289612 C T FDPS Missense_Mutation p.P318S 0.20 deleterious(0.02) possibly_damaging(0.461) TCGA-HF-7134-01 1 156244428 156244428 C T SMG5 Silent p.Q168Q 0.20 TCGA-HF-7134-01 1 157557325 157557325 T C FCRL4 Silent p.K196K 0.19 TCGA-HF-7134-01 1 158549038 158549038 T G OR10X1 Missense_Mutation p.I218L 0.15 tolerated(0.62) benign(0.262) TCGA-HF-7134-01 1 158582617 158582617 T A SPTA1 Missense_Mutation p.D2375V 0.62 deleterious(0) probably_damaging(0.921) TCGA-HF-7134-01 1 158582618 158582618 C T SPTA1 Missense_Mutation p.D2375N 0.62 deleterious(0.02) benign(0.2) TCGA-HF-7134-01 1 158637676 158637676 C A SPTA1 Missense_Mutation p.E670D 0.25 tolerated(0.21) benign(0.063) TCGA-HF-7134-01 1 158653170 158653170 T C SPTA1 Silent p.E127E 0.20 TCGA-HF-7134-01 1 159284335 159284335 T G OR10J3 Missense_Mutation p.T39P 0.19 deleterious(0) probably_damaging(0.954) TCGA-HF-7134-01 1 159802766 159802766 C A SLAMF8 Missense_Mutation p.N156K 0.16 tolerated(0.14) possibly_damaging(0.574) TCGA-HF-7134-01 1 159899184 159899184 C T IGSF9 Splice_Site p.X776_splice 0.25 TCGA-HF-7134-01 1 161207974 161207974 C T NR1I3 5'UTR 0.71 TCGA-HF-7134-01 1 16388636 16388636 C T FAM131C Missense_Mutation p.G76S 0.22 tolerated(1) benign(0.005) TCGA-HF-7134-01 1 16893760 16893760 A C NBPF1 Missense_Mutation p.L918R 0.05 tolerated(0.84) benign(0.208) TCGA-HF-7134-01 1 170934367 170934367 A C MROH9 Silent p.R151R 0.22 TCGA-HF-7134-01 1 172411651 172411651 G A PIGC Missense_Mutation p.R38W 0.25 tolerated(0.06) benign(0.024) TCGA-HF-7134-01 1 177249637 177249637 G T BRINP2 Missense_Mutation p.S442I 0.15 deleterious(0) possibly_damaging(0.771) TCGA-HF-7134-01 1 177249787 177249787 G A BRINP2 Missense_Mutation p.R492Q 0.27 deleterious(0.02) probably_damaging(0.992) TCGA-HF-7134-01 1 180849227 180849227 C T XPR1 Silent p.N608N 0.17 TCGA-HF-7134-01 1 183100472 183100472 C T LAMC1 Silent p.N1175N 0.17 TCGA-HF-7134-01 1 18809751 18809751 C A KLHDC7A Missense_Mutation p.T759N 0.29 tolerated(0.06) unknown(0) TCGA-HF-7134-01 1 201291195 201291195 C T PKP1 Silent p.N500N 0.15 TCGA-HF-7134-01 1 203311506 203311506 G C FMOD Missense_Mutation p.L366V 0.14 tolerated(0.46) benign(0.213) TCGA-HF-7134-01 1 203786155 203786155 G T ZC3H11A 5'UTR 0.33 TCGA-HF-7134-01 1 214585030 214585030 A C PTPN14 Silent p.P169P 0.12 TCGA-HF-7134-01 1 230805208 230805208 A C COG2 Missense_Mutation p.Y234S 0.54 deleterious(0) probably_damaging(0.997) TCGA-HF-7134-01 1 230805209 230805209 C A COG2 Nonsense_Mutation p.Y234* 0.53 TCGA-HF-7134-01 1 248525400 248525400 G C OR2T4 Missense_Mutation p.C173S 0.20 deleterious(0) benign(0.314) TCGA-HF-7134-01 1 27097801 27097804 CCAG - ARID1A Frame_Shift_Del p.Q1131Lfs*29 0.40 TCGA-HF-7134-01 1 34076671 34076671 T A CSMD2 Missense_Mutation p.N2065Y 0.50 deleterious(0) probably_damaging(0.999) TCGA-HF-7134-01 1 35474521 35474521 G T ZMYM6 Nonsense_Mutation p.C499* 0.45 TCGA-HF-7134-01 1 36367923 36367923 G A AGO1 Missense_Mutation p.R461Q 0.39 tolerated(0.87) benign(0.436) TCGA-HF-7134-01 1 36935296 36935296 C T CSF3R Nonsense_Mutation p.W477* 0.36 TCGA-HF-7134-01 1 40038130 40038130 T A PABPC4 Nonsense_Mutation p.K108* 0.47 TCGA-HF-7134-01 1 43221309 43221309 C T LEPRE1 Splice_Site p.X361_splice 0.42 TCGA-HF-7134-01 1 55166899 55166899 C A MROH7 Missense_Mutation p.H1063Q 0.24 tolerated(0.58) benign(0.01) TCGA-HF-7134-01 1 66798039 66798039 A G PDE4B Intron 0.50 TCGA-HF-7134-01 1 74670754 74670754 T C FPGT Silent p.L341L 0.37 TCGA-HF-7134-01 1 79386006 79386006 A C ELTD1 Missense_Mutation p.C441W 0.24 deleterious(0) probably_damaging(1) TCGA-HF-7134-01 1 86304297 86304297 T C COL24A1 Missense_Mutation p.R1218G 0.41 deleterious(0) possibly_damaging(0.876) TCGA-HF-7134-01 1 94506773 94506773 C T ABCA4 Missense_Mutation p.G1172S 0.38 tolerated(0.15) benign(0.004) TCGA-HF-7134-01 1 99771573 99771606 GAGCATTCATGCCTCTATGGATTCCGCTCGATCA - LPPR4 Frame_Shift_Del p.I435Sfs*20 0.18 TCGA-HF-7134-01 20 2413156 2413156 A C TGM6 Missense_Mutation p.Q663P 0.28 deleterious(0.02) possibly_damaging(0.633) TCGA-HF-7134-01 20 25277034 25277034 T C PYGB Missense_Mutation p.I803T 0.47 deleterious(0) probably_damaging(0.995) TCGA-HF-7134-01 20 30671833 30671833 G A HCK Silent p.V223V 0.17 TCGA-HF-7134-01 20 31652537 31652537 G T BPIFB3 Silent p.V270V 0.24 TCGA-HF-7134-01 20 34568410 34568410 C A CNBD2 Silent p.I91I 0.27 TCGA-HF-7134-01 20 42965828 42965828 G A R3HDML Missense_Mutation p.A11T 0.27 tolerated(0.37) benign(0.009) TCGA-HF-7134-01 20 44171401 44171401 C A EPPIN Missense_Mutation p.C110F 0.20 deleterious(0) probably_damaging(0.999) TCGA-HF-7134-01 20 47845288 47845288 G A DDX27 Missense_Mutation p.R279H 0.28 deleterious(0) probably_damaging(1) TCGA-HF-7134-01 20 54573804 54573804 A C CBLN4 Missense_Mutation p.L139V 0.30 deleterious(0) probably_damaging(0.991) TCGA-HF-7134-01 20 55027312 55027312 T C CASS4 Silent p.S360S 0.33 TCGA-HF-7134-01 20 57484421 57484421 G A GNAS Missense_Mutation p.R844H 0.28 deleterious(0.01) probably_damaging(1) TCGA-HF-7134-01 21 10952949 10952949 T G TPTE Missense_Mutation p.K83T 0.31 deleterious(0.04) possibly_damaging(0.663) TCGA-HF-7134-01 21 17203874 17203874 C T USP25 Missense_Mutation p.S640F 0.46 deleterious(0) possibly_damaging(0.46) TCGA-HF-7134-01 21 28315802 28315802 T G ADAMTS5 Missense_Mutation p.E434D 0.24 tolerated(0.45) benign(0.16) TCGA-HF-7134-01 21 32554783 32554783 C A TIAM1 Missense_Mutation p.A948S 0.38 tolerated(1) benign(0) TCGA-HF-7134-01 22 16448996 16448996 A T OR11H1 Missense_Mutation p.L270H 0.19 deleterious(0) probably_damaging(0.971) TCGA-HF-7134-01 22 19511730 19511730 C T CLDN5 Missense_Mutation p.G102S 0.62 deleterious(0) probably_damaging(1) TCGA-HF-7134-01 22 39112868 39112868 G A GTPBP1 Missense_Mutation p.G233S 0.30 tolerated(0.37) possibly_damaging(0.532) TCGA-HF-7134-01 22 42128329 42128329 T A MEI1 Missense_Mutation p.F393I 0.73 deleterious(0.01) probably_damaging(0.99) TCGA-HF-7134-01 2 105473362 105473362 C T POU3F3 Missense_Mutation p.T465M 0.43 deleterious(0) probably_damaging(0.948) TCGA-HF-7134-01 2 107040854 107040854 T G RGPD3 Missense_Mutation p.K1190T 0.45 tolerated(0.06) benign(0.18) TCGA-HF-7134-01 2 108487515 108487515 G A RGPD4 Missense_Mutation p.G1019S 0.25 tolerated(0.24) benign(0.019) TCGA-HF-7134-01 2 131520154 131520154 A C AMER3 Missense_Mutation p.K170T 0.30 deleterious(0) probably_damaging(1) TCGA-HF-7134-01 2 133540806 133540806 G A NCKAP5 Missense_Mutation p.S1193F 0.29 tolerated(0.1) benign(0.016) TCGA-HF-7134-01 2 141643706 141643706 C T LRP1B Splice_Site p.X1322_splice 0.20 TCGA-HF-7134-01 2 152670787 152670787 T C ARL5A Missense_Mutation p.N51D 0.33 deleterious(0) benign(0) TCGA-HF-7134-01 2 1546277 1546277 T C TPO 3'UTR 0.45 TCGA-HF-7134-01 2 166188040 166188040 A G SCN2A Missense_Mutation p.T784A 0.43 deleterious(0) probably_damaging(0.971) TCGA-HF-7134-01 2 166245742 166245742 C A SCN2A Missense_Mutation p.A1809E 0.35 deleterious(0) probably_damaging(1) TCGA-HF-7134-01 2 172942524 172942524 G A METAP1D Splice_Site p.X235_splice 0.35 TCGA-HF-7134-01 2 179463590 179463590 T G TTN Missense_Mutation p.K18949N 0.43 TCGA-HF-7134-01 2 179464440 179464440 C A TTN Nonsense_Mutation p.E18730* 0.49 TCGA-HF-7134-01 2 179466867 179466867 T G TTN Missense_Mutation p.E18377D 0.19 TCGA-HF-7134-01 2 179604389 179604389 A C TTN Missense_Mutation p.V4524G 0.43 TCGA-HF-7134-01 2 198436900 198436900 C T RFTN2 Silent p.L446L 0.33 TCGA-HF-7134-01 2 210557940 210557940 A G MAP2 Missense_Mutation p.D349G 0.24 tolerated_low_confidence(0.11) benign(0.184) TCGA-HF-7134-01 2 211163261 211163261 C A MYL1 Missense_Mutation p.D63Y 0.38 deleterious(0) probably_damaging(0.998) TCGA-HF-7134-01 2 212285296 212285296 T G ERBB4 Missense_Mutation p.K1002T 0.37 tolerated(0.41) benign(0.103) TCGA-HF-7134-01 2 219884406 219884406 C T CCDC108 Missense_Mutation p.V1099I 0.27 tolerated(0.32) benign(0.416) TCGA-HF-7134-01 2 230911275 230911275 C T SLC16A14 Silent p.R189R 0.30 TCGA-HF-7134-01 2 234368840 234368840 G C DGKD Missense_Mutation p.A944P 0.35 deleterious(0.02) benign(0.284) TCGA-HF-7134-01 2 234774909 234774909 C T MSL3P1 RNA 0.50 TCGA-HF-7134-01 2 26174662 26174662 C A KIF3C Missense_Mutation p.G668C 0.33 possibly_damaging(0.668) TCGA-HF-7134-01 2 27596742 27596742 C A SNX17 Silent p.V112V 0.20 TCGA-HF-7134-01 2 31560520 31560520 T G XDH Missense_Mutation p.K1313T 0.37 tolerated(0.16) benign(0.001) TCGA-HF-7134-01 2 43991504 43991504 G A PLEKHH2 Silent p.K1432K 0.28 TCGA-HF-7134-01 2 51255157 51255157 G A NRXN1 Silent p.R85R 0.67 TCGA-HF-7134-01 2 64112990 64112990 A C UGP2 Missense_Mutation p.E281D 0.49 deleterious(0) probably_damaging(0.998) TCGA-HF-7134-01 2 85924685 85924685 C T GNLY Silent p.R104R 0.30 TCGA-HF-7134-01 3 100951720 100951720 T G IMPG2 Missense_Mutation p.E1046D 0.32 tolerated(1) benign(0.002) TCGA-HF-7134-01 3 100951814 100951814 T C IMPG2 Missense_Mutation p.K1015R 0.29 deleterious(0) probably_damaging(0.955) TCGA-HF-7134-01 3 120959305 120959305 G A STXBP5L Missense_Mutation p.G451R 0.40 deleterious(0) probably_damaging(1) TCGA-HF-7134-01 3 121981095 121981095 G A CASR Missense_Mutation p.E405K 0.46 tolerated(0.34) possibly_damaging(0.63) TCGA-HF-7134-01 3 122288700 122288700 A G DTX3L Silent p.K588K 0.40 TCGA-HF-7134-01 3 130095505 130095505 A C COL6A5 Missense_Mutation p.I165L 0.64 deleterious(0.01) benign(0.208) TCGA-HF-7134-01 3 132440855 132440855 G A NPHP3 Silent p.R115R 0.35 TCGA-HF-7134-01 3 136708318 136708318 G T IL20RB Missense_Mutation p.D148Y 0.36 deleterious(0.02) benign(0.053) TCGA-HF-7134-01 3 140419847 140419847 T G TRIM42 3'UTR 0.26 TCGA-HF-7134-01 3 172835538 172835538 T G SPATA16 Intron 0.29 TCGA-HF-7134-01 3 186459365 186459365 G A KNG1 Missense_Mutation p.G394R 0.38 tolerated(0.4) benign(0.041) TCGA-HF-7134-01 3 190127744 190127744 C T CLDN16 Silent p.A279A 0.39 TCGA-HF-7134-01 3 194344003 194344003 C T TMEM44 Missense_Mutation p.V188I 0.29 tolerated(1) benign(0.003) TCGA-HF-7134-01 3 25502784 25502784 C A RARB Missense_Mutation p.D86E 0.36 deleterious(0) possibly_damaging(0.551) TCGA-HF-7134-01 3 38651271 38651271 G A SCN5A Silent p.A296A 0.45 TCGA-HF-7134-01 3 41266113 41266113 C T CTNNB1 Missense_Mutation p.S37F 0.47 deleterious(0) probably_damaging(0.962) TCGA-HF-7134-01 3 42448674 42448674 G A LYZL4 Missense_Mutation p.R24C 0.21 deleterious(0) probably_damaging(0.975) TCGA-HF-7134-01 3 47162959 47162959 G A SETD2 Missense_Mutation p.S1056L 0.24 deleterious_low_confidence(0) possibly_damaging(0.836) TCGA-HF-7134-01 3 49722748 49722748 G A MST1 Silent p.R497R 0.29 TCGA-HF-7134-01 3 65346779 65346779 A G MAGI1 Intron 0.33 TCGA-HF-7134-01 3 71021749 71021749 C T FOXP1 Missense_Mutation p.D539N 0.31 deleterious(0.01) probably_damaging(0.965) TCGA-HF-7134-01 3 7721971 7721971 T C GRM7 Missense_Mutation p.V896A 0.23 tolerated_low_confidence(0.21) benign(0.024) TCGA-HF-7134-01 3 78988057 78988057 C A ROBO1 Missense_Mutation p.D65Y 0.32 deleterious(0) possibly_damaging(0.908) TCGA-HF-7134-01 3 9594297 9594297 C T LHFPL4 Missense_Mutation p.G23S 0.30 deleterious(0) possibly_damaging(0.577) TCGA-HF-7134-01 4 102816478 102816478 T G BANK1 Missense_Mutation p.L307R 0.40 deleterious(0) probably_damaging(0.961) TCGA-HF-7134-01 4 113353573 113353573 C T ALPK1 Missense_Mutation p.S957F 0.34 deleterious(0.01) probably_damaging(0.993) TCGA-HF-7134-01 4 128723071 128723071 A C HSPA4L Missense_Mutation p.K221Q 0.28 deleterious(0.02) probably_damaging(0.955) TCGA-HF-7134-01 4 147860992 147860992 C G TTC29 Missense_Mutation p.R19T 0.37 tolerated(0.18) benign(0.118) TCGA-HF-7134-01 4 156775374 156775374 T G ASIC5 Missense_Mutation p.N147T 0.45 tolerated(0.2) benign(0.403) TCGA-HF-7134-01 4 167658647 167658647 C A SPOCK3 Missense_Mutation p.G371V 0.31 deleterious(0) probably_damaging(0.998) TCGA-HF-7134-01 4 189012827 189012827 T C TRIML2 Silent p.K288K 0.28 TCGA-HF-7134-01 4 46042907 46042907 C T GABRG1 3'UTR 0.50 TCGA-HF-7134-01 4 5500795 5500795 T G STK32B Silent p.R410R 0.31 TCGA-HF-7134-01 4 55972913 55972913 C A KDR Nonsense_Mutation p.G493* 0.33 TCGA-HF-7134-01 4 55972914 55972914 C A KDR Missense_Mutation p.Q492H 0.32 tolerated(0.1) benign(0.005) TCGA-HF-7134-01 4 55979497 55979497 T G KDR Missense_Mutation p.K317T 0.37 tolerated(0.34) benign(0.039) TCGA-HF-7134-01 4 55979622 55979622 T C KDR Silent p.R275R 0.34 TCGA-HF-7134-01 4 62800631 62800631 A C LPHN3 Missense_Mutation p.D661A 0.33 deleterious(0) benign(0.142) TCGA-HF-7134-01 4 70079727 70079727 T G UGT2B11 Missense_Mutation p.E238D 0.24 tolerated(0.12) possibly_damaging(0.578) TCGA-HF-7134-01 4 77003532 77003532 G A ART3 Missense_Mutation p.V209I 0.33 tolerated(0.16) benign(0.315) TCGA-HF-7134-01 4 96075879 96075879 G T BMPR1B 3'UTR 0.15 TCGA-HF-7134-01 5 112176358 112176358 C T APC Silent p.T1689T 0.42 TCGA-HF-7134-01 5 113698926 113698926 G A KCNN2 Missense_Mutation p.E152K 0.32 deleterious(0) possibly_damaging(0.899) TCGA-HF-7134-01 5 136957672 136957672 C A KLHL3 3'UTR 0.36 TCGA-HF-7134-01 5 140530585 140530585 A C PCDHB6 Missense_Mutation p.Q249H 0.36 deleterious(0.04) benign(0.038) TCGA-HF-7134-01 5 140531021 140531021 G A PCDHB6 Missense_Mutation p.V395M 0.36 tolerated(0.06) benign(0.012) TCGA-HF-7134-01 5 146780323 146780323 A C DPYSL3 Missense_Mutation p.F462V 0.37 deleterious(0) possibly_damaging(0.808) TCGA-HF-7134-01 5 14751213 14751213 C T ANKH Missense_Mutation p.D218N 0.33 tolerated(0.51) possibly_damaging(0.535) TCGA-HF-7134-01 5 161322857 161322857 A C GABRA1 Missense_Mutation p.S348R 0.34 tolerated(0.27) probably_damaging(0.992) TCGA-HF-7134-01 5 170736764 170736764 G A TLX3 Missense_Mutation p.R132H 0.13 tolerated(0.13) possibly_damaging(0.761) TCGA-HF-7134-01 5 56777318 56777318 C T ACTBL2 3'UTR 0.45 TCGA-HF-7134-01 5 63256846 63256846 T C HTR1A Missense_Mutation p.E234G 0.34 tolerated(0.17) benign(0.026) TCGA-HF-7134-01 5 9629560 9629560 C A TAS2R1 Missense_Mutation p.L195F 0.37 deleterious(0.02) possibly_damaging(0.464) TCGA-HF-7134-01 6 10410495 10410495 G A TFAP2A Missense_Mutation p.T40M 0.33 deleterious(0) possibly_damaging(0.495) TCGA-HF-7134-01 6 105198250 105198250 G C HACE1 Missense_Mutation p.P770R 0.39 tolerated(0.3) benign(0.361) TCGA-HF-7134-01 6 112443347 112443347 G A LAMA4 Missense_Mutation p.R1449W 0.26 deleterious(0.02) possibly_damaging(0.462) TCGA-HF-7134-01 6 12124724 12124724 G T HIVEP1 Missense_Mutation p.V1566F 0.26 tolerated(0.09) possibly_damaging(0.463) TCGA-HF-7134-01 6 133789774 133789774 C T EYA4 Missense_Mutation p.A292V 0.32 tolerated(0.48) benign(0.146) TCGA-HF-7134-01 6 137815276 137815276 C A OLIG3 Missense_Mutation p.R11I 0.39 deleterious(0) unknown(0) TCGA-HF-7134-01 6 142519579 142519579 T C VTA1 Missense_Mutation p.I175T 0.45 tolerated(0.5) benign(0.002) TCGA-HF-7134-01 6 152545633 152545633 A C SYNE1 Missense_Mutation p.L7173R 0.32 probably_damaging(0.998) TCGA-HF-7134-01 6 152557950 152557950 A C SYNE1 Splice_Site p.X6733_splice 0.27 TCGA-HF-7134-01 6 20118753 20118753 G A MBOAT1 Missense_Mutation p.A309V 0.38 deleterious(0) probably_damaging(1) TCGA-HF-7134-01 6 20118754 20118754 C A MBOAT1 Missense_Mutation p.A309S 0.39 deleterious(0.02) probably_damaging(1) TCGA-HF-7134-01 6 29974396 29974396 C A ZNRD1-AS1 Intron 0.32 TCGA-HF-7134-01 6 31940205 31940205 A G STK19 Missense_Mutation p.H116R 0.40 tolerated(0.49) benign(0.002) TCGA-HF-7134-01 6 33996118 33996118 G A GRM4 Missense_Mutation p.T823M 0.41 deleterious(0.02) probably_damaging(1) TCGA-HF-7134-01 6 37252184 37252184 A C TBC1D22B Missense_Mutation p.I249L 0.13 deleterious(0.04) benign(0.267) TCGA-HF-7134-01 6 39824160 39824160 C T DAAM2 Missense_Mutation p.R28W 0.10 deleterious(0) possibly_damaging(0.898) TCGA-HF-7134-01 6 43590382 43590382 T C GTPBP2 Silent p.A485A 0.06 TCGA-HF-7134-01 6 71603911 71603911 C T B3GAT2 Missense_Mutation p.R219H 0.36 tolerated(0.06) probably_damaging(0.995) TCGA-HF-7134-01 7 111638540 111638540 A C DOCK4 Missense_Mutation p.Y61D 0.75 deleterious(0) probably_damaging(0.925) TCGA-HF-7134-01 7 128846107 128846107 T G SMO Missense_Mutation p.L346R 0.24 deleterious(0) possibly_damaging(0.808) TCGA-HF-7134-01 7 131982975 131982975 C A PLXNA4 Missense_Mutation p.V460L 0.04 deleterious(0.01) probably_damaging(0.997) TCGA-HF-7134-01 7 158829446 158829446 A C VIPR2 Missense_Mutation p.W249G 0.40 deleterious(0) probably_damaging(0.978) TCGA-HF-7134-01 7 23240344 23240344 C T NUPL2 Silent p.L418L 0.13 TCGA-HF-7134-01 7 25175877 25175877 G A C7orf31 Missense_Mutation p.T496M 0.22 tolerated(0.16) benign(0.013) TCGA-HF-7134-01 7 2953083 2953083 C T CARD11 Missense_Mutation p.E953K 0.36 tolerated(0.15) benign(0.012) TCGA-HF-7134-01 7 47917177 47917177 C T PKD1L1 Silent p.P1191P 0.20 TCGA-HF-7134-01 7 47920384 47920384 C T PKD1L1 Silent p.V1154V 0.22 TCGA-HF-7134-01 7 4917307 4917307 C T RADIL Missense_Mutation p.R155Q 0.52 deleterious(0) probably_damaging(1) TCGA-HF-7134-01 7 57528604 57528604 A C ZNF716 Missense_Mutation p.N146T 0.53 deleterious(0.02) possibly_damaging(0.691) TCGA-HF-7134-01 7 64388201 64388201 A G ZNF273 Silent p.G165G 0.18 TCGA-HF-7134-01 7 6662336 6662336 G A ZNF853 Missense_Mutation p.G572R 0.33 deleterious_low_confidence(0.02) benign(0.409) TCGA-HF-7134-01 7 80302141 80302141 A G CD36 Missense_Mutation p.K394R 0.22 tolerated(0.28) benign(0.049) TCGA-HF-7134-01 7 80418758 80418758 G T SEMA3C Silent p.L406L 0.21 TCGA-HF-7134-01 7 81603806 81603806 T C CACNA2D1 Missense_Mutation p.E673G 0.27 tolerated(0.17) benign(0.167) TCGA-HF-7134-01 7 81667395 81667395 T G CACNA2D1 Missense_Mutation p.N346H 0.52 deleterious(0) possibly_damaging(0.829) TCGA-HF-7134-01 7 894588 894588 A C SUN1 Missense_Mutation p.E432A 0.18 tolerated(0.05) benign(0.002) TCGA-HF-7134-01 7 89909173 89909173 A T C7orf63 Silent p.R446R 0.25 TCGA-HF-7134-01 8 100205166 100205166 A G VPS13B Missense_Mutation p.Q799R 0.21 deleterious(0.01) possibly_damaging(0.775) TCGA-HF-7134-01 8 105509626 105509626 T G LRP12 Missense_Mutation p.N385T 0.18 deleterious(0.02) probably_damaging(0.933) TCGA-HF-7134-01 8 11565814 11565814 C T GATA4 5'UTR 0.29 TCGA-HF-7134-01 8 124156991 124156991 G A TBC1D31 Missense_Mutation p.R957K 0.41 tolerated(0.65) benign(0.002) TCGA-HF-7134-01 8 143928074 143928074 G T GML Missense_Mutation p.A149S 0.50 deleterious(0.01) possibly_damaging(0.791) TCGA-HF-7134-01 8 16001067 16001067 T G MSR1 Missense_Mutation p.T345P 0.71 tolerated(0.22) benign(0.002) TCGA-HF-7134-01 8 1616573 1616573 C T DLGAP2 Missense_Mutation p.T550M 0.16 deleterious(0) probably_damaging(0.932) TCGA-HF-7134-01 8 16850646 16850646 A G FGF20 Silent p.L191L 0.20 TCGA-HF-7134-01 8 21560406 21560406 G A GFRA2 Missense_Mutation p.R377W 0.34 tolerated(0.09) benign(0) TCGA-HF-7134-01 8 22428641 22428641 C A SORBS3 Silent p.R550R 0.18 TCGA-HF-7134-01 8 41525881 41525881 G A ANK1 Silent p.P1807P 0.16 TCGA-HF-7134-01 8 41798801 41798801 G A KAT6A Silent p.G866G 0.27 TCGA-HF-7134-01 8 49833861 49833861 A C SNAI2 5'UTR 0.61 TCGA-HF-7134-01 8 53084668 53084668 A C ST18 Missense_Mutation p.D251E 0.18 tolerated(0.14) benign(0.021) TCGA-HF-7134-01 8 55371955 55371955 C T SOX17 Silent p.D215D 0.20 TCGA-HF-7134-01 8 77618164 77618164 A G ZFHX4 Missense_Mutation p.E614G 0.57 possibly_damaging(0.607) TCGA-HF-7134-01 8 81897444 81897444 G A PAG1 Missense_Mutation p.A148V 0.45 tolerated(0.09) benign(0.084) TCGA-HF-7134-01 9 116750605 116750605 C T ZNF618 Missense_Mutation p.R28C 0.31 tolerated_low_confidence(0.12) benign(0.004) TCGA-HF-7134-01 9 133901857 133901857 G A LAMC3 Missense_Mutation p.V187M 0.84 deleterious(0.01) possibly_damaging(0.593) TCGA-HF-7134-01 9 17135262 17135262 C T CNTLN Nonsense_Mutation p.R67* 0.33 TCGA-HF-7134-01 9 18661935 18661935 T C ADAMTSL1 Missense_Mutation p.Y317H 0.58 deleterious(0) probably_damaging(0.999) TCGA-HF-7134-01 9 4118468 4118468 G A GLIS3 Missense_Mutation p.S337L 0.58 deleterious(0) probably_damaging(0.99) TCGA-HF-7134-01 X 105278299 105278299 C T SERPINA7 Missense_Mutation p.G324D 0.69 deleterious(0.03) probably_damaging(1) TCGA-HF-7134-01 X 117582881 117582881 A C WDR44 Missense_Mutation p.E891D 0.67 tolerated(0.21) benign(0.109) TCGA-HF-7134-01 X 129518529 129518529 T G GPR119 Missense_Mutation p.K298T 0.72 deleterious(0) possibly_damaging(0.893) TCGA-HF-7134-01 X 129629795 129629795 C T RP1-274L7.1 Intron 0.69 TCGA-HF-7134-01 X 130678546 130678546 T G OR13H1 Missense_Mutation p.F167V 0.79 deleterious(0.01) probably_damaging(0.985) TCGA-HF-7134-01 X 135431280 135431280 T G GPR112 Silent p.T1805T 0.59 TCGA-HF-7134-01 X 140335854 140335854 A G SPANXC Silent p.T30T 0.29 TCGA-HF-7134-01 X 151900057 151900057 T C MAGEA12 Silent p.Q248Q 0.72 TCGA-HF-7134-01 X 153416412 153416412 G A OPN1LW Missense_Mutation p.V133I 0.72 deleterious(0.05) possibly_damaging(0.786) TCGA-HF-7134-01 X 17818711 17818711 C T RAI2 Missense_Mutation p.V474M 0.68 tolerated(0.26) unknown(0) TCGA-HF-7134-01 X 29973643 29973643 T A IL1RAPL1 Silent p.A599A 0.67 TCGA-HF-7134-01 X 40506753 40506753 G A CXorf38 Missense_Mutation p.A7V 0.91 tolerated(0.11) possibly_damaging(0.768) TCGA-HF-7134-01 X 53279785 53279785 G A IQSEC2 Missense_Mutation p.P658L 0.64 tolerated(0.08) possibly_damaging(0.62) TCGA-HF-7134-01 X 65479958 65479958 G A HEPH Missense_Mutation p.R1072Q 0.71 deleterious(0) probably_damaging(1) TCGA-HF-7134-01 X 69261762 69261762 C G AWAT2 Missense_Mutation p.V300L 0.74 deleterious(0.01) benign(0.107) TCGA-HF-7134-01 X 75649975 75649975 T G MAGEE1 Missense_Mutation p.L551R 0.71 deleterious(0) probably_damaging(0.998) TCGA-HF-7136-01 10 104125283 104125283 C T GBF1 Missense_Mutation p.R745W 0.26 tolerated(0.06) probably_damaging(0.99) TCGA-HF-7136-01 10 62021617 62021617 C G ANK3 Missense_Mutation p.R266S 0.33 possibly_damaging(0.685) TCGA-HF-7136-01 10 69750049 69750049 C A HERC4 Missense_Mutation p.D518Y 0.41 deleterious(0) possibly_damaging(0.491) TCGA-HF-7136-01 10 98292809 98292810 - T TM9SF3 Frame_Shift_Ins p.W442Mfs*23 0.36 TCGA-HF-7136-01 11 104900494 104900494 C G CASP1 Missense_Mutation p.D254H 0.42 deleterious(0) probably_damaging(1) TCGA-HF-7136-01 11 111571702 111571702 C T SIK2 Nonsense_Mutation p.Q191* 0.77 TCGA-HF-7136-01 11 119206667 119206667 C T RNF26 Missense_Mutation p.R279C 0.84 tolerated(0.08) benign(0.026) TCGA-HF-7136-01 11 121425952 121425952 G A SORL1 Silent p.E832E 0.27 TCGA-HF-7136-01 11 22399153 22399153 G T SLC17A6 Missense_Mutation p.G539V 0.18 tolerated(0.06) possibly_damaging(0.548) TCGA-HF-7136-01 11 5068218 5068218 G A OR52J3 Missense_Mutation p.V155I 0.38 tolerated(0.22) benign(0.013) TCGA-HF-7136-01 11 56431542 56431542 T A OR5AR1 Nonsense_Mutation p.C127* 0.21 TCGA-HF-7136-01 11 7111495 7111495 C T RBMXL2 Missense_Mutation p.R382C 1.00 tolerated(0.06) unknown(0) TCGA-HF-7136-01 12 111926287 111926287 C A ATXN2 Missense_Mutation p.A905S 0.23 benign(0.044) TCGA-HF-7136-01 12 112119584 112119584 C T BRAP Silent p.A100A 0.07 TCGA-HF-7136-01 12 121176172 121176172 G A ACADS Silent p.T238T 0.11 TCGA-HF-7136-01 12 124325995 124325995 G A DNAH10 Missense_Mutation p.V1637M 0.27 probably_damaging(0.999) TCGA-HF-7136-01 12 133256628 133256628 C A POLE Missense_Mutation p.C112F 0.10 tolerated(0.7) benign(0.008) TCGA-HF-7136-01 12 133435752 133435752 G A CHFR Silent p.T283T 0.63 TCGA-HF-7136-01 12 29604458 29604459 - A OVCH1 Frame_Shift_Ins p.P859Sfs*10 0.11 TCGA-HF-7136-01 12 4600345 4600345 T A C12orf4 Missense_Mutation p.K499I 0.74 deleterious(0) probably_damaging(1) TCGA-HF-7136-01 12 48596917 48596917 G T OR10AD1 Missense_Mutation p.D53E 0.25 deleterious(0.05) probably_damaging(0.996) TCGA-HF-7136-01 12 55615590 55615590 G A OR10A7 Missense_Mutation p.R261Q 0.27 tolerated(0.52) benign(0.171) TCGA-HF-7136-01 13 37679324 37679324 C T CSNK1A1L Missense_Mutation p.G24R 0.31 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-HF-7136-01 13 41639174 41639177 GAAA - WBP4 Frame_Shift_Del p.K34Ifs*39 0.51 TCGA-HF-7136-01 14 20863741 20863741 G T TEP1 Missense_Mutation p.T599N 0.14 tolerated(0.5) benign(0.259) TCGA-HF-7136-01 14 39597518 39597518 A C GEMIN2 Missense_Mutation p.N200T 0.45 tolerated(0.18) benign(0.026) TCGA-HF-7136-01 14 42360632 42360632 C G LRFN5 Missense_Mutation p.S522C 0.24 deleterious(0) probably_damaging(0.971) TCGA-HF-7136-01 14 71576670 71576670 A T PCNX 3'UTR 0.31 TCGA-HF-7136-01 14 91592791 91592791 C T C14orf159 Intron 0.24 TCGA-HF-7136-01 15 49303926 49303926 A G SECISBP2L Splice_Site p.X622_splice 0.10 TCGA-HF-7136-01 15 74290635 74290635 C T PML Silent p.C140C 0.11 TCGA-HF-7136-01 16 21208827 21208827 C A ZP2 Nonsense_Mutation p.E738* 0.08 TCGA-HF-7136-01 16 22278169 22278169 A T EEF2K Missense_Mutation p.H579L 0.24 deleterious(0) probably_damaging(0.989) TCGA-HF-7136-01 17 6941923 6941923 C T SLC16A13 Missense_Mutation p.R266C 0.48 deleterious(0) probably_damaging(1) TCGA-HF-7136-01 18 19762749 19762749 G T GATA6 Missense_Mutation p.G487V 0.15 deleterious(0) probably_damaging(0.999) TCGA-HF-7136-01 18 28710576 28710576 T A DSC1 Silent p.V862V 0.30 TCGA-HF-7136-01 19 14887536 14887536 A G EMR2 Splice_Site p.X11_splice 1.00 TCGA-HF-7136-01 19 18255381 18255381 G A MAST3 Missense_Mutation p.G868D 0.43 tolerated(0.07) benign(0.063) TCGA-HF-7136-01 19 37441189 37441189 G A ZNF568 Silent p.T378T 0.51 TCGA-HF-7136-01 19 46195970 46195970 C G QPCTL Silent p.S3S 0.32 TCGA-HF-7136-01 19 8669960 8669960 G A ADAMTS10 Silent p.Y124Y 0.92 TCGA-HF-7136-01 1 147380211 147380211 C T GJA8 Silent p.F43F 0.35 TCGA-HF-7136-01 1 155884048 155884049 TC - KIAA0907 Frame_Shift_Del p.D570Ffs*3 0.18 TCGA-HF-7136-01 1 156012626 156012626 G A UBQLN4 Missense_Mutation p.S402L 0.13 deleterious(0) possibly_damaging(0.492) TCGA-HF-7136-01 1 159409739 159409739 T G OR10J1 Missense_Mutation p.L64R 0.43 tolerated(1) benign(0) TCGA-HF-7136-01 1 161494682 161494682 C AG HSPA6 Frame_Shift_Ins p.K79Efs*76 0.23 TCGA-HF-7136-01 1 161693378 161693378 G A FCRLB Missense_Mutation p.V92I 0.44 tolerated(0.33) possibly_damaging(0.776) TCGA-HF-7136-01 1 196758803 196758803 C T CFHR3 Intron 0.23 TCGA-HF-7136-01 1 204119000 204119000 G A ETNK2 Missense_Mutation p.R117W 0.24 deleterious(0) benign(0.048) TCGA-HF-7136-01 1 210001396 210001396 T G DIEXF 5'UTR 0.32 TCGA-HF-7136-01 1 245850350 245850350 C A KIF26B Silent p.A1355A 0.65 TCGA-HF-7136-01 1 44450680 44450680 C T B4GALT2 Silent p.G260G 0.25 TCGA-HF-7136-01 1 53925206 53925206 C T DMRTB1 Missense_Mutation p.A27V 0.61 tolerated(0.06) possibly_damaging(0.447) TCGA-HF-7136-01 1 79470902 79470902 C A ELTD1 Missense_Mutation p.V9F 0.56 tolerated_low_confidence(0.57) benign(0) TCGA-HF-7136-01 20 30432356 30432356 C A FOXS1 Missense_Mutation p.E330D 0.27 deleterious_low_confidence(0) probably_damaging(0.97) TCGA-HF-7136-01 20 31043938 31043939 CC - C20orf112 Frame_Shift_Del p.V124Efs*26 0.25 TCGA-HF-7136-01 20 39832810 39832810 G T ZHX3 Missense_Mutation p.N249K 0.50 tolerated(0.91) benign(0) TCGA-HF-7136-01 20 42695466 42695466 C A TOX2 Missense_Mutation p.P485T 0.44 tolerated(0.31) possibly_damaging(0.585) TCGA-HF-7136-01 20 4771185 4771185 C T RASSF2 Missense_Mutation p.R150H 0.35 tolerated(0.48) benign(0.017) TCGA-HF-7136-01 20 57769755 57769755 C A ZNF831 Missense_Mutation p.S1227R 0.81 tolerated(0.23) benign(0.003) TCGA-HF-7136-01 20 60903046 60903046 C A LAMA5 Missense_Mutation p.G1558V 0.51 probably_damaging(1) TCGA-HF-7136-01 20 62571773 62571773 C A UCKL1 Silent p.V456V 0.39 TCGA-HF-7136-01 20 62700799 62700799 C T TCEA2 Missense_Mutation p.R139C 0.88 deleterious(0) probably_damaging(1) TCGA-HF-7136-01 21 38390196 38390196 C G RIPPLY3 Missense_Mutation p.R88G 0.80 deleterious(0.02) benign(0.397) TCGA-HF-7136-01 22 19241744 19241744 T C CLTCL1 Missense_Mutation p.K86R 0.72 tolerated(0.98) benign(0.009) TCGA-HF-7136-01 22 33254081 33254081 C T TIMP3 Missense_Mutation p.R132C 0.72 deleterious(0) probably_damaging(0.932) TCGA-HF-7136-01 22 42540316 42540316 T C RP4-669P10.16 5'Flank 0.78 TCGA-HF-7136-01 22 50905993 50905993 C A SBF1 Missense_Mutation p.V136L 0.69 tolerated(0.12) probably_damaging(0.995) TCGA-HF-7136-01 2 102836364 102836364 A T IL1RL2 Missense_Mutation p.H293L 0.46 tolerated(0.06) benign(0.005) TCGA-HF-7136-01 2 121736090 121736090 C A GLI2 Silent p.P483P 0.59 TCGA-HF-7136-01 2 183129090 183129090 G T PDE1A Missense_Mutation p.D51E 0.20 tolerated(0.52) benign(0.076) TCGA-HF-7136-01 2 211473150 211473150 T C CPS1 Missense_Mutation p.V759A 0.04 tolerated(0.15) benign(0.002) TCGA-HF-7136-01 2 235950502 235950502 G A SH3BP4 Silent p.P363P 0.46 TCGA-HF-7136-01 2 51255000 51255000 C A NRXN1 Missense_Mutation p.V138L 0.40 tolerated(0.12) benign(0.089) TCGA-HF-7136-01 2 56210114 56210114 C A MIR217 RNA 0.17 TCGA-HF-7136-01 3 188242498 188242498 G T LPP Missense_Mutation p.D118Y 0.37 deleterious(0) probably_damaging(0.999) TCGA-HF-7136-01 3 188242499 188242499 A T LPP Missense_Mutation p.D118V 0.37 deleterious(0) probably_damaging(0.999) TCGA-HF-7136-01 3 38888715 38888715 C T SCN11A Missense_Mutation p.D1616N 0.18 deleterious(0.01) possibly_damaging(0.511) TCGA-HF-7136-01 3 5025415 5025415 C T BHLHE40 3'UTR 0.49 TCGA-HF-7136-01 3 8787572 8787572 C T CAV3 3'UTR 0.82 TCGA-HF-7136-01 4 189012609 189012609 C A TRIML2 Missense_Mutation p.C361F 0.58 deleterious(0) probably_damaging(0.99) TCGA-HF-7136-01 4 65155449 65155449 A C TECRL Missense_Mutation p.L271V 0.43 deleterious(0.02) possibly_damaging(0.724) TCGA-HF-7136-01 5 114632279 114632279 G T CCDC112 5'UTR 0.25 TCGA-HF-7136-01 5 41739516 41739516 C G OXCT1 Missense_Mutation p.Q499H 0.21 deleterious(0.03) benign(0.003) TCGA-HF-7136-01 5 7727327 7727328 TC - ADCY2 Frame_Shift_Del p.L609Hfs*94 0.23 TCGA-HF-7136-01 5 79968173 79968173 A T MSH3 Silent p.G301G 0.22 TCGA-HF-7136-01 6 108985299 108985299 G A FOXO3 Silent p.S421S 0.20 TCGA-HF-7136-01 6 146747700 146747700 G A GRM1 Intron 0.82 TCGA-HF-7136-01 6 18122065 18122065 T C NHLRC1 Missense_Mutation p.Q258R 0.09 tolerated(0.35) benign(0.001) TCGA-HF-7136-01 6 36343663 36343663 G A ETV7 Missense_Mutation p.R98C 0.07 deleterious(0.01) probably_damaging(1) TCGA-HF-7136-01 6 82459692 82459692 C T FAM46A Missense_Mutation p.R350H 0.41 tolerated(0.09) probably_damaging(0.91) TCGA-HF-7136-01 7 141478766 141478766 G A TAS2R4 Missense_Mutation p.V160M 0.27 tolerated(0.15) benign(0.253) TCGA-HF-7136-01 8 131795957 131795957 T A ADCY8 Missense_Mutation p.N1083I 0.80 deleterious(0) benign(0.101) TCGA-HF-7136-01 8 55533785 55533785 C T RP1 Missense_Mutation p.R87W 0.19 deleterious(0) probably_damaging(0.995) TCGA-HF-7136-01 8 55542395 55542395 A T RP1 Missense_Mutation p.I1985F 0.31 deleterious(0.02) benign(0.01) TCGA-HF-7136-01 9 123527050 123527050 G A FBXW2 Silent p.N384N 0.17 TCGA-HF-7136-01 9 132580876 132580876 C T TOR1A Missense_Mutation p.S224N 0.44 tolerated(0.53) benign(0.002) TCGA-HF-7136-01 9 138683695 138683695 G A KCNT1 Silent p.P1185P 0.55 TCGA-HF-7136-01 9 140772535 140772535 G A CACNA1B Silent p.A50A 0.17 TCGA-HF-7136-01 9 19063161 19063161 T G HAUS6 Missense_Mutation p.N492H 0.56 tolerated(0.08) benign(0.015) TCGA-HF-7136-01 9 21971024 21971024 G - CDKN2A Frame_Shift_Del p.R112Vfs*34 0.24 TCGA-HF-7136-01 9 21974715 21974732 GCAGCGCCCCCGCCTCCA - CDKN2A In_Frame_Del p.L32_L37del 0.27 TCGA-HF-7136-01 9 90586220 90586220 C A CDK20 Missense_Mutation p.G74C 0.15 deleterious(0) probably_damaging(0.997) TCGA-HF-7136-01 X 140994530 140994530 T G MAGEC1 Missense_Mutation p.V447G 0.61 tolerated_low_confidence(0.37) benign(0.307) TCGA-HF-7136-01 X 83128442 83128442 T G CYLC1 Missense_Mutation p.S242R 0.65 deleterious(0.01) possibly_damaging(0.504) TCGA-HF-A5NB-01 10 102267665 102267665 C A SEC31B Missense_Mutation p.R213S 0.47 deleterious(0) benign(0.269) TCGA-HF-A5NB-01 10 102296273 102296273 G A HIF1AN Missense_Mutation p.A95T 0.50 deleterious(0.02) benign(0.281) TCGA-HF-A5NB-01 10 102738506 102738506 A G MRPL43 3'Flank 0.43 TCGA-HF-A5NB-01 10 102896610 102896610 G A TLX1 Silent p.P311P 0.49 TCGA-HF-A5NB-01 10 103296410 103296410 G A BTRC Missense_Mutation p.G526E 0.38 tolerated(0.06) probably_damaging(0.996) TCGA-HF-A5NB-01 10 104119147 104119147 G A GBF1 Missense_Mutation p.V378I 0.40 tolerated(0.27) benign(0.362) TCGA-HF-A5NB-01 10 105187088 105187088 A T PDCD11 Missense_Mutation p.Y1103F 0.36 tolerated(1) benign(0.001) TCGA-HF-A5NB-01 10 105363404 105363404 G A SH3PXD2A Missense_Mutation p.P496L 0.41 deleterious(0) probably_damaging(1) TCGA-HF-A5NB-01 10 105823571 105823571 C T COL17A1 Missense_Mutation p.G258R 0.40 unknown(0) TCGA-HF-A5NB-01 10 11367878 11367878 T - CELF2 Frame_Shift_Del p.F459Lfs*17 0.34 TCGA-HF-A5NB-01 10 115348178 115348178 C T HABP2 3'UTR 0.48 TCGA-HF-A5NB-01 10 116614996 116614996 C A FAM160B1 Missense_Mutation p.P615H 0.49 deleterious(0) probably_damaging(0.966) TCGA-HF-A5NB-01 10 11911501 11911501 C T PROSER2 Missense_Mutation p.A135V 0.33 tolerated(0.67) benign(0.003) TCGA-HF-A5NB-01 10 120514109 120514110 - C CACUL1 Frame_Shift_Ins p.Q56Afs*30 0.36 TCGA-HF-A5NB-01 10 120797765 120797765 C T EIF3A Missense_Mutation p.R1238H 0.41 tolerated_low_confidence(0.12) unknown(0) TCGA-HF-A5NB-01 10 124058648 124058648 A G BTBD16 Missense_Mutation p.R264G 0.13 deleterious(0.01) possibly_damaging(0.897) TCGA-HF-A5NB-01 10 124755676 124755676 A T IKZF5 Missense_Mutation p.D50E 0.11 tolerated(0.64) benign(0.028) TCGA-HF-A5NB-01 10 128830003 128830003 C T DOCK1 Missense_Mutation p.L551F 0.46 deleterious(0) possibly_damaging(0.856) TCGA-HF-A5NB-01 10 13151191 13151192 - C OPTN Frame_Shift_Ins p.H26Pfs*37 0.33 TCGA-HF-A5NB-01 10 134599308 134599308 C A NKX6-2 Missense_Mutation p.G49C 0.50 deleterious(0.01) probably_damaging(0.922) TCGA-HF-A5NB-01 10 135095752 135095752 C A TUBGCP2 Missense_Mutation p.R823L 0.11 tolerated(0.29) benign(0.009) TCGA-HF-A5NB-01 10 15107599 15107599 G A OLAH Missense_Mutation p.R193H 0.46 tolerated(0.34) benign(0.032) TCGA-HF-A5NB-01 10 15255485 15255485 G A FAM171A1 Missense_Mutation p.P701L 0.41 deleterious(0.01) probably_damaging(1) TCGA-HF-A5NB-01 10 15600158 15600158 A - ITGA8 Frame_Shift_Del p.L894Cfs*29 0.38 TCGA-HF-A5NB-01 10 15688917 15688917 C A ITGA8 Missense_Mutation p.G379C 0.09 deleterious(0) probably_damaging(0.998) TCGA-HF-A5NB-01 10 16967710 16967710 T C CUBN Missense_Mutation p.Y2112C 0.48 deleterious(0) probably_damaging(1) TCGA-HF-A5NB-01 10 17083158 17083158 C T CUBN Silent p.P1297P 0.44 TCGA-HF-A5NB-01 10 17363121 17363121 G A ST8SIA6 Missense_Mutation p.A318V 0.05 tolerated(0.2) benign(0.304) TCGA-HF-A5NB-01 10 18689935 18689935 C T CACNB2 Intron 0.41 TCGA-HF-A5NB-01 10 24834133 24834133 G A KIAA1217 Intron 0.23 TCGA-HF-A5NB-01 10 26243824 26243824 G A MYO3A Missense_Mutation p.A64T 0.24 deleterious(0.03) possibly_damaging(0.491) TCGA-HF-A5NB-01 10 26500814 26500814 G A MYO3A Silent p.E1591E 0.27 TCGA-HF-A5NB-01 10 28032287 28032287 C T MKX Missense_Mutation p.A20T 0.36 tolerated_low_confidence(0.12) benign(0.001) TCGA-HF-A5NB-01 10 32557897 32557897 G A EPC1 3'UTR 0.47 TCGA-HF-A5NB-01 10 33209310 33209310 G T ITGB1 Missense_Mutation p.L378I 0.40 deleterious(0) probably_damaging(0.982) TCGA-HF-A5NB-01 10 34408642 34408642 G A PARD3 Silent p.S1192S 0.46 TCGA-HF-A5NB-01 10 35495861 35495861 C T CREM Missense_Mutation p.P213S 0.38 tolerated(0.12) probably_damaging(0.999) TCGA-HF-A5NB-01 10 3823821 3823821 G A KLF6 Intron 0.48 TCGA-HF-A5NB-01 10 38344509 38344509 A C ZNF33A Missense_Mutation p.Q486P 0.46 tolerated(0.28) probably_damaging(0.947) TCGA-HF-A5NB-01 10 394633 394633 G A DIP2C Missense_Mutation p.P1060L 0.44 deleterious(0) probably_damaging(0.999) TCGA-HF-A5NB-01 10 429974 429974 C T DIP2C Silent p.A623A 0.43 TCGA-HF-A5NB-01 10 43692443 43692443 C T RASGEF1A Silent p.A443A 0.33 TCGA-HF-A5NB-01 10 49791087 49791087 T G ARHGAP22 Missense_Mutation p.S49R 0.36 deleterious(0.01) possibly_damaging(0.829) TCGA-HF-A5NB-01 10 50740854 50740854 C T ERCC6-PGBD3 Missense_Mutation p.G53R 0.36 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-HF-A5NB-01 10 51584890 51584890 T G NCOA4 Missense_Mutation p.L346R 0.43 tolerated(0.36) benign(0.022) TCGA-HF-A5NB-01 10 52834583 52834583 C T PRKG1 Missense_Mutation p.A78V 0.41 deleterious(0) possibly_damaging(0.494) TCGA-HF-A5NB-01 10 53457391 53457391 T - CSTF2T 3'UTR 0.34 TCGA-HF-A5NB-01 10 5808547 5808547 T C GDI2 Missense_Mutation p.Y349C 0.42 deleterious(0) probably_damaging(0.993) TCGA-HF-A5NB-01 10 61552816 61552816 C T CCDC6 Silent p.P428P 0.43 TCGA-HF-A5NB-01 10 61802483 61802484 TC - ANK3 Frame_Shift_Del p.E4367Nfs*27 0.32 TCGA-HF-A5NB-01 10 61844568 61844568 T C ANK3 Missense_Mutation p.H1289R 0.34 benign(0.082) TCGA-HF-A5NB-01 10 68687170 68687170 T C LRRTM3 Missense_Mutation p.S166P 0.09 deleterious(0) probably_damaging(1) TCGA-HF-A5NB-01 10 68688202 68688202 G A LRRTM3 Missense_Mutation p.E510K 0.53 deleterious(0) probably_damaging(0.987) TCGA-HF-A5NB-01 10 70056801 70056803 ACA - PBLD Intron 0.47 TCGA-HF-A5NB-01 10 72025919 72025919 T C NPFFR1 Missense_Mutation p.N79S 0.46 deleterious(0) probably_damaging(1) TCGA-HF-A5NB-01 10 73466721 73466721 C T C10orf105 3'Flank 0.39 TCGA-HF-A5NB-01 10 75855443 75855443 G A VCL Missense_Mutation p.E525K 0.41 deleterious(0.01) probably_damaging(0.998) TCGA-HF-A5NB-01 10 76737142 76737142 G A KAT6B Missense_Mutation p.V688I 0.39 benign(0.007) TCGA-HF-A5NB-01 10 76781825 76781827 GAA - KAT6B In_Frame_Del p.E1076del 0.32 TCGA-HF-A5NB-01 10 76854441 76854441 C T DUSP13 Missense_Mutation p.R247Q 0.37 deleterious(0.03) benign(0.056) TCGA-HF-A5NB-01 10 79581377 79581377 C T DLG5 Silent p.T955T 0.51 TCGA-HF-A5NB-01 10 79629056 79629056 T C AL391421.1 3'UTR 0.26 TCGA-HF-A5NB-01 10 83635238 83635238 C - NRG3 Frame_Shift_Del p.R50Gfs*53 0.56 TCGA-HF-A5NB-01 10 88703215 88703215 C T MMRN2 Silent p.A442A 0.53 TCGA-HF-A5NB-01 10 890939 890939 T - LARP4B Frame_Shift_Del p.T163Hfs*47 0.27 TCGA-HF-A5NB-01 10 93038067 93038067 C T PCGF5 Silent p.F255F 0.53 TCGA-HF-A5NB-01 10 93038125 93038125 G A PCGF5 3'UTR 0.56 TCGA-HF-A5NB-01 10 93242829 93242829 A - HECTD2 Frame_Shift_Del p.K274Nfs*11 0.35 TCGA-HF-A5NB-01 10 93683744 93683744 T C BTAF1 5'UTR 0.38 TCGA-HF-A5NB-01 10 93684 93684 T - TUBB8 Frame_Shift_Del p.K216Nfs*10 0.36 TCGA-HF-A5NB-01 10 93784557 93784562 TGGCAC GGGCA BTAF1 Frame_Shift_Del p.S1636Rfs*13 0.10 TCGA-HF-A5NB-01 10 94715406 94715406 A C EXOC6 Missense_Mutation p.N570H 0.41 tolerated(0.1) possibly_damaging(0.615) TCGA-HF-A5NB-01 10 96084942 96084943 TT - PLCE1 Intron 0.44 TCGA-HF-A5NB-01 10 98064272 98064272 G A DNTT Silent p.A6A 0.50 TCGA-HF-A5NB-01 10 98170230 98170230 C T TLL2 Silent p.A350A 0.25 TCGA-HF-A5NB-01 11 100863163 100863163 T C TMEM133 Missense_Mutation p.Y42H 0.50 tolerated_low_confidence(0.09) benign(0.077) TCGA-HF-A5NB-01 11 101832598 101832598 C T KIAA1377 Missense_Mutation p.R278W 0.05 tolerated(0.12) benign(0) TCGA-HF-A5NB-01 11 102713563 102713563 T - MMP3 Frame_Shift_Del p.I64Sfs*12 0.22 TCGA-HF-A5NB-01 11 102814931 102814931 G A MMP13 3'UTR 0.47 TCGA-HF-A5NB-01 11 104871213 104871213 A G CASP5 Missense_Mutation p.S256P 0.11 deleterious(0.02) possibly_damaging(0.561) TCGA-HF-A5NB-01 11 108121687 108121687 C T ATM Nonsense_Mutation p.Q499* 0.23 TCGA-HF-A5NB-01 11 108384228 108384228 T C EXPH5 Missense_Mutation p.H669R 0.07 tolerated(0.3) benign(0.202) TCGA-HF-A5NB-01 11 108384460 108384460 C T EXPH5 Missense_Mutation p.V592I 0.13 tolerated(1) benign(0.001) TCGA-HF-A5NB-01 11 1086362 1086362 C - MUC2 Frame_Shift_Del p.T1026Pfs*5 0.35 TCGA-HF-A5NB-01 11 109294983 109294983 G A C11orf87 3'UTR 0.57 TCGA-HF-A5NB-01 11 111784633 111784633 A G HSPB2 3'UTR 0.43 TCGA-HF-A5NB-01 11 111899335 111899335 G A DLAT Missense_Mutation p.G160R 0.37 deleterious(0) probably_damaging(1) TCGA-HF-A5NB-01 11 113286183 113286183 C T DRD2 Missense_Mutation p.S228N 0.36 tolerated(0.88) benign(0.008) TCGA-HF-A5NB-01 11 11354262 11354262 G A GALNT18 Silent p.S465S 0.50 TCGA-HF-A5NB-01 11 113813776 113813776 G A HTR3B Missense_Mutation p.D257N 0.31 deleterious(0) probably_damaging(1) TCGA-HF-A5NB-01 11 115047265 115047265 C T CADM1 Missense_Mutation p.A420T 0.47 deleterious(0) probably_damaging(0.992) TCGA-HF-A5NB-01 11 116629079 116629079 G A BUD13 Missense_Mutation p.R469C 0.53 deleterious(0) probably_damaging(1) TCGA-HF-A5NB-01 11 117153233 117153233 G A RNF214 Missense_Mutation p.R609Q 0.50 tolerated(0.08) possibly_damaging(0.885) TCGA-HF-A5NB-01 11 117374725 117374725 G A DSCAML1 Missense_Mutation p.P792S 0.25 deleterious(0.05) benign(0.036) TCGA-HF-A5NB-01 11 117779494 117779494 C A TMPRSS13 Missense_Mutation p.R372L 0.19 tolerated(0.16) benign(0.041) TCGA-HF-A5NB-01 11 118984695 118984695 C T C2CD2L Silent p.S541S 0.45 TCGA-HF-A5NB-01 11 121174079 121174079 T C SC5D 5'UTR 0.47 TCGA-HF-A5NB-01 11 121500352 121500352 C T SORL1 3'UTR 0.19 TCGA-HF-A5NB-01 11 1215457 1215457 C T MUC5AC RNA 0.50 TCGA-HF-A5NB-01 11 1219169 1219169 T C MUC5AC RNA 0.21 TCGA-HF-A5NB-01 11 123814011 123814011 G A OR6T1 Missense_Mutation p.R179C 0.47 tolerated(1) benign(0) TCGA-HF-A5NB-01 11 123814252 123814252 G A OR6T1 Silent p.I98I 0.43 TCGA-HF-A5NB-01 11 123847423 123847423 C T OR10S1 Missense_Mutation p.A326T 0.47 tolerated_low_confidence(0.08) benign(0.036) TCGA-HF-A5NB-01 11 123893738 123893738 G A OR10G9 Missense_Mutation p.V7M 0.41 deleterious(0.01) benign(0.028) TCGA-HF-A5NB-01 11 124637716 124637716 G A MSANTD2 Missense_Mutation p.R294W 0.42 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-HF-A5NB-01 11 124765501 124765501 C T ROBO4 Silent p.P296P 0.42 TCGA-HF-A5NB-01 11 1256349 1256349 C A MUC5B Silent p.R889R 0.44 TCGA-HF-A5NB-01 11 1271255 1271257 CCT - MUC5B In_Frame_Del p.S4384del 0.23 TCGA-HF-A5NB-01 11 1276110 1276110 G A MUC5B Missense_Mutation p.G5222S 0.33 unknown(0) TCGA-HF-A5NB-01 11 128844089 128844089 C T ARHGAP32 Silent p.L987L 0.52 TCGA-HF-A5NB-01 11 130130748 130130748 T C ZBTB44 Intron 0.51 TCGA-HF-A5NB-01 11 131240719 131240719 A - NTM Frame_Shift_Del p.M8Cfs*38 0.34 TCGA-HF-A5NB-01 11 134237211 134237211 C A GLB1L2 Missense_Mutation p.P289T 0.12 tolerated(0.64) benign(0.024) TCGA-HF-A5NB-01 11 13716370 13716370 G A FAR1 Missense_Mutation p.G20S 0.48 deleterious(0) probably_damaging(0.999) TCGA-HF-A5NB-01 11 14665808 14665808 C G PDE3B Missense_Mutation p.P63A 0.30 tolerated_low_confidence(0.75) benign(0.001) TCGA-HF-A5NB-01 11 14665997 14665997 G A PDE3B Missense_Mutation p.A126T 0.43 deleterious(0.04) possibly_damaging(0.892) TCGA-HF-A5NB-01 11 17434969 17434970 - G ABCC8 Frame_Shift_Ins p.H816Pfs*39 0.32 TCGA-HF-A5NB-01 11 17794004 17794004 A - KCNC1 Frame_Shift_Del p.K457Rfs*20 0.44 TCGA-HF-A5NB-01 11 18638501 18638501 T - SPTY2D1 Frame_Shift_Del p.D33Tfs*23 0.33 TCGA-HF-A5NB-01 11 18764894 18764894 G A PTPN5 Missense_Mutation p.T125M 0.45 tolerated_low_confidence(0.06) benign(0.033) TCGA-HF-A5NB-01 11 20113869 20113869 G T NAV2 Missense_Mutation p.G1983C 0.09 deleterious(0) probably_damaging(1) TCGA-HF-A5NB-01 11 20178691 20178691 G T DBX1 Missense_Mutation p.F188L 0.33 deleterious(0.01) probably_damaging(0.934) TCGA-HF-A5NB-01 11 20673853 20673853 T C SLC6A5 Missense_Mutation p.F697L 0.43 tolerated(1) benign(0.006) TCGA-HF-A5NB-01 11 2189140 2189140 G A TH Silent p.R231R 0.44 TCGA-HF-A5NB-01 11 22242647 22242647 A - ANO5 Frame_Shift_Del p.N64Ifs*27 0.32 TCGA-HF-A5NB-01 11 22387186 22387186 A G SLC17A6 Missense_Mutation p.Y281C 0.45 deleterious(0) probably_damaging(0.999) TCGA-HF-A5NB-01 11 2323351 2323351 G - TSPAN32 5'UTR 0.32 TCGA-HF-A5NB-01 11 2437201 2437201 C T TRPM5 Missense_Mutation p.A355T 0.56 deleterious(0.02) benign(0.377) TCGA-HF-A5NB-01 11 2609949 2609949 A - KCNQ1 Frame_Shift_Del p.K422Sfs*10 0.28 TCGA-HF-A5NB-01 11 280981 280981 C T NLRP6 Missense_Mutation p.T416M 0.43 deleterious(0) probably_damaging(0.961) TCGA-HF-A5NB-01 11 28119441 28119441 T C KIF18A Silent p.V18V 0.42 TCGA-HF-A5NB-01 11 31812317 31812317 G - PAX6 Frame_Shift_Del p.P389Hfs*7 0.34 TCGA-HF-A5NB-01 11 32637520 32637520 T - CCDC73 Frame_Shift_Del p.E448Kfs*5 0.57 TCGA-HF-A5NB-01 11 32997895 32997895 A - QSER1 Frame_Shift_Del p.N1697Mfs*4 0.37 TCGA-HF-A5NB-01 11 33620607 33620607 G C KIAA1549L Intron 0.64 TCGA-HF-A5NB-01 11 34485781 34485781 A G CAT Missense_Mutation p.Q442R 0.55 deleterious(0) probably_damaging(1) TCGA-HF-A5NB-01 11 35302519 35302519 G A SLC1A2 Missense_Mutation p.A439V 0.49 deleterious(0) probably_damaging(1) TCGA-HF-A5NB-01 11 36511802 36511802 G A TRAF6 Silent p.P385P 0.37 TCGA-HF-A5NB-01 11 3659804 3659804 C T ART5 3'UTR 0.50 TCGA-HF-A5NB-01 11 400076 400077 - C PKP3 Frame_Shift_Ins p.L464Pfs*224 0.48 TCGA-HF-A5NB-01 11 4112979 4112979 G A STIM1 Missense_Mutation p.G670D 0.47 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-HF-A5NB-01 11 44286624 44286624 G - ALX4 Frame_Shift_Del p.P339Lfs*12 0.26 TCGA-HF-A5NB-01 11 45949029 45949029 C G GYLTL1B Missense_Mutation p.P497A 0.40 tolerated(0.69) benign(0.008) TCGA-HF-A5NB-01 11 46406985 46406985 G A CHRM4 Missense_Mutation p.R375C 0.52 deleterious(0.01) possibly_damaging(0.745) TCGA-HF-A5NB-01 11 4703475 4703475 A - OR51E2 Frame_Shift_Del p.F156Sfs*6 0.41 TCGA-HF-A5NB-01 11 47431804 47431804 C T SLC39A13 Silent p.S53S 0.50 TCGA-HF-A5NB-01 11 47510447 47510447 A G CELF1 Silent p.G67G 0.18 TCGA-HF-A5NB-01 11 533845 533845 A G HRAS Missense_Mutation p.Y71H 0.44 deleterious(0.05) possibly_damaging(0.699) TCGA-HF-A5NB-01 11 5372974 5372974 G - OR51B6 Frame_Shift_Del p.L80* 0.34 TCGA-HF-A5NB-01 11 55606707 55606707 A G OR5D16 Silent p.T160T 0.46 TCGA-HF-A5NB-01 11 55653610 55653610 A - TRIM51 Frame_Shift_Del p.M144Cfs*15 0.56 TCGA-HF-A5NB-01 11 55681671 55681671 G - OR5W2 Frame_Shift_Del p.L130Cfs*16 0.34 TCGA-HF-A5NB-01 11 563511 563511 C T RASSF7 Intron 0.48 TCGA-HF-A5NB-01 11 56468490 56468490 C T OR9G1 Silent p.P209P 0.23 TCGA-HF-A5NB-01 11 57569552 57569553 TC - CTNND1 Frame_Shift_Del p.S436Ffs*4 0.34 TCGA-HF-A5NB-01 11 5862833 5862833 A G OR52E6 Missense_Mutation p.Y99H 0.47 deleterious(0) benign(0.003) TCGA-HF-A5NB-01 11 60183622 60183622 C A MS4A14 Missense_Mutation p.A427D 0.50 tolerated(0.76) benign(0) TCGA-HF-A5NB-01 11 61725899 61725899 G A BEST1 Intron 0.75 TCGA-HF-A5NB-01 11 6191558 6191558 A G OR52B2 5'UTR 0.41 TCGA-HF-A5NB-01 11 62349014 62349014 C T TUT1 Missense_Mutation p.D183N 0.39 tolerated(0.25) benign(0.012) TCGA-HF-A5NB-01 11 62570938 62570938 C - NXF1 Frame_Shift_Del p.A108Lfs*29 0.33 TCGA-HF-A5NB-01 11 62649529 62649529 A - SLC3A2 Frame_Shift_Del p.K301Rfs*31 0.38 TCGA-HF-A5NB-01 11 62677614 62677614 C T CHRM1 Missense_Mutation p.R320Q 0.44 tolerated(0.55) benign(0.16) TCGA-HF-A5NB-01 11 63273754 63273754 G A LGALS12 5'Flank 0.46 TCGA-HF-A5NB-01 11 63320420 63320420 G A HRASLS2 3'UTR 0.46 TCGA-HF-A5NB-01 11 63706576 63706576 T C NAA40 Splice_Site p.X2_splice 0.19 TCGA-HF-A5NB-01 11 63885482 63885482 C T FLRT1 Silent p.G581G 0.54 TCGA-HF-A5NB-01 11 639789 639789 C T DRD4 Silent p.R180R 0.48 TCGA-HF-A5NB-01 11 64030204 64030204 G A PLCB3 Missense_Mutation p.R760H 0.42 deleterious(0) probably_damaging(0.999) TCGA-HF-A5NB-01 11 64032904 64032904 A G PLCB3 Missense_Mutation p.T989A 0.33 tolerated(0.54) benign(0.017) TCGA-HF-A5NB-01 11 64066926 64066926 C T KCNK4 Silent p.L304L 0.21 TCGA-HF-A5NB-01 11 64138915 64138915 C - RPS6KA4 Frame_Shift_Del p.R763Afs*21 0.55 TCGA-HF-A5NB-01 11 64664251 64664251 G A ATG2A Silent p.G1747G 0.40 TCGA-HF-A5NB-01 11 64882450 64882450 C T TM7SF2 Silent p.D263D 0.38 TCGA-HF-A5NB-01 11 64950208 64950208 T C CAPN1 Silent p.T12T 0.36 TCGA-HF-A5NB-01 11 64978813 64978813 C T CAPN1 3'UTR 0.30 TCGA-HF-A5NB-01 11 65269458 65269458 T C MALAT1 RNA 0.53 TCGA-HF-A5NB-01 11 65315174 65315174 C - LTBP3 Frame_Shift_Del p.R656Afs*6 0.37 TCGA-HF-A5NB-01 11 65374180 65374180 G A MAP3K11 Missense_Mutation p.R529W 0.39 deleterious(0) possibly_damaging(0.896) TCGA-HF-A5NB-01 11 65423107 65423107 A G RELA Intron 0.20 TCGA-HF-A5NB-01 11 65486402 65486402 C G KAT5 Missense_Mutation p.L495V 0.31 deleterious(0) probably_damaging(0.991) TCGA-HF-A5NB-01 11 65637420 65637420 G - EFEMP2 Frame_Shift_Del p.P212Hfs*137 0.26 TCGA-HF-A5NB-01 11 65653077 65653077 T - FIBP Frame_Shift_Del p.K190Nfs*5 0.35 TCGA-HF-A5NB-01 11 66264928 66264928 C T DPP3 Missense_Mutation p.R620C 0.46 tolerated(0.07) benign(0.023) TCGA-HF-A5NB-01 11 6632168 6632168 C T TAF10 Silent p.P214P 0.39 TCGA-HF-A5NB-01 11 66613371 66613371 T A RCE1 Missense_Mutation p.N265K 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-HF-A5NB-01 11 67079236 67079241 CAGGAG - SSH3 In_Frame_Del p.E623_Q624del 0.45 TCGA-HF-A5NB-01 11 67133075 67133075 G A CLCF1 Silent p.N70N 0.44 TCGA-HF-A5NB-01 11 67267198 67267198 C T PITPNM1 Silent p.T389T 0.53 TCGA-HF-A5NB-01 11 67267649 67267649 G - PITPNM1 Frame_Shift_Del p.P295Qfs*74 0.23 TCGA-HF-A5NB-01 11 68846241 68846241 C T TPCN2 Missense_Mutation p.R464C 0.41 deleterious(0) probably_damaging(0.953) TCGA-HF-A5NB-01 11 70049780 70049780 G A FADD Missense_Mutation p.R72H 0.64 deleterious(0) probably_damaging(0.998) TCGA-HF-A5NB-01 11 70200495 70200495 T C PPFIA1 Missense_Mutation p.L751S 0.50 deleterious(0.04) possibly_damaging(0.745) TCGA-HF-A5NB-01 11 70202354 70202354 A - PPFIA1 Frame_Shift_Del p.K861Sfs*27 0.33 TCGA-HF-A5NB-01 11 70281261 70281261 G A CTTN Intron 0.30 TCGA-HF-A5NB-01 11 72308582 72308582 C T PDE2A Silent p.L135L 0.43 TCGA-HF-A5NB-01 11 7439358 7439358 C T SYT9 Missense_Mutation p.R446C 0.39 tolerated(0.26) possibly_damaging(0.58) TCGA-HF-A5NB-01 11 74618209 74618209 T C XRRA1 Missense_Mutation p.S248G 0.43 deleterious(0) probably_damaging(0.998) TCGA-HF-A5NB-01 11 77336817 77336817 A G CLNS1A Silent p.D103D 0.44 TCGA-HF-A5NB-01 11 77911709 77911710 - C USP35 Frame_Shift_Ins p.M354Hfs*39 0.44 TCGA-HF-A5NB-01 11 791875 791875 C T SLC25A22 3'UTR 0.65 TCGA-HF-A5NB-01 11 82877219 82877219 A - PCF11 Frame_Shift_Del p.K429Rfs*7 0.23 TCGA-HF-A5NB-01 11 82909565 82909565 C T ANKRD42 Nonsense_Mutation p.R35* 0.23 TCGA-HF-A5NB-01 11 8496270 8496270 T - STK33 Frame_Shift_Del p.E62Kfs*8 0.34 TCGA-HF-A5NB-01 11 88300595 88300596 - A GRM5 Frame_Shift_Ins p.L752Ffs*16 0.34 TCGA-HF-A5NB-01 11 89018006 89018006 C A TYR Missense_Mutation p.P417H 0.33 deleterious(0) probably_damaging(0.936) TCGA-HF-A5NB-01 11 9048995 9048996 - G SCUBE2 Frame_Shift_Ins p.K816Qfs*10 0.38 TCGA-HF-A5NB-01 11 93471608 93471608 T G TAF1D Missense_Mutation p.K42N 0.50 tolerated(0.05) benign(0.177) TCGA-HF-A5NB-01 11 94592711 94592711 G A AMOTL1 Missense_Mutation p.A656T 0.12 tolerated(0.55) benign(0.009) TCGA-HF-A5NB-01 11 95591781 95591781 G A MTMR2 Nonsense_Mutation p.R162* 0.38 TCGA-HF-A5NB-01 11 95621344 95621344 G A MTMR2 Silent p.A54A 0.54 TCGA-HF-A5NB-01 11 95712334 95712334 C T MAML2 Silent p.T1083T 0.43 TCGA-HF-A5NB-01 11 9771521 9771521 A G SWAP70 3'UTR 0.13 TCGA-HF-A5NB-01 12 100042263 100042263 C T FAM71C Missense_Mutation p.T104I 0.36 tolerated(0.1) benign(0.15) TCGA-HF-A5NB-01 12 100613799 100613799 T - ACTR6 Frame_Shift_Del p.F314Lfs*6 0.22 TCGA-HF-A5NB-01 12 100617775 100617775 T - ACTR6 3'UTR 0.27 TCGA-HF-A5NB-01 12 101603478 101603478 C T SLC5A8 Missense_Mutation p.R50H 0.49 deleterious(0.01) possibly_damaging(0.812) TCGA-HF-A5NB-01 12 102025866 102025866 T C MYBPC1 Missense_Mutation p.V144A 0.37 deleterious(0.03) probably_damaging(0.999) TCGA-HF-A5NB-01 12 10215711 10215711 A G CLEC9A Missense_Mutation p.Y126C 0.52 deleterious(0.01) possibly_damaging(0.847) TCGA-HF-A5NB-01 12 102869551 102869551 C T IGF1 Silent p.S30S 0.39 TCGA-HF-A5NB-01 12 104049338 104049338 C T STAB2 Silent p.L571L 0.43 TCGA-HF-A5NB-01 12 104100681 104100682 - GT STAB2 Frame_Shift_Ins p.E1373Vfs*189 0.27 TCGA-HF-A5NB-01 12 104144470 104144470 C T STAB2 Silent p.D2184D 0.58 TCGA-HF-A5NB-01 12 108145796 108145796 A G PRDM4 Silent p.G174G 0.25 TCGA-HF-A5NB-01 12 109186436 109186436 G - SSH1 Frame_Shift_Del p.L507Sfs*62 0.36 TCGA-HF-A5NB-01 12 109577469 109577469 C T ACACB Missense_Mutation p.R87W 0.48 tolerated_low_confidence(0.15) benign(0.001) TCGA-HF-A5NB-01 12 109895967 109895967 G A KCTD10 Intron 0.33 TCGA-HF-A5NB-01 12 110019240 110019240 C - MVK Frame_Shift_Del p.A141Rfs*18 0.19 TCGA-HF-A5NB-01 12 110226519 110226519 G T TRPV4 Missense_Mutation p.L632M 0.06 deleterious(0.04) probably_damaging(0.997) TCGA-HF-A5NB-01 12 110565944 110565944 G A IFT81 Missense_Mutation p.A80T 0.05 tolerated(0.6) benign(0.003) TCGA-HF-A5NB-01 12 111291376 111291376 G A CCDC63 Silent p.Q59Q 0.48 TCGA-HF-A5NB-01 12 11183906 11183907 - A TAS2R31 Frame_Shift_Ins p.S10Ffs*15 0.25 TCGA-HF-A5NB-01 12 112622702 112622702 G A HECTD4 Silent p.R3210R 0.43 TCGA-HF-A5NB-01 12 11285914 11285914 T A TAS2R30 Missense_Mutation p.R310S 0.51 tolerated_low_confidence(0.1) benign(0.032) TCGA-HF-A5NB-01 12 112915821 112915821 T C PTPN11 Splice_Site p.X364_splice 0.08 TCGA-HF-A5NB-01 12 113435458 113435458 T C OAS2 Missense_Mutation p.L254P 0.45 deleterious(0) probably_damaging(1) TCGA-HF-A5NB-01 12 118293320 118293320 C T KSR2 Missense_Mutation p.E129K 0.47 deleterious(0.04) benign(0.102) TCGA-HF-A5NB-01 12 119617376 119617377 - C HSPB8 Frame_Shift_Ins p.P90Tfs*37 0.36 TCGA-HF-A5NB-01 12 119942961 119942961 G - CCDC60 Frame_Shift_Del p.S248Pfs*7 0.30 TCGA-HF-A5NB-01 12 120650499 120650499 C T PXN Intron 0.43 TCGA-HF-A5NB-01 12 120894923 120894923 C T GATC Missense_Mutation p.A100V 0.41 tolerated(0.27) benign(0.015) TCGA-HF-A5NB-01 12 121448829 121448829 G A C12orf43 Intron 0.44 TCGA-HF-A5NB-01 12 122090684 122090684 C T MORN3 Missense_Mutation p.A227T 0.46 tolerated(0.52) benign(0.066) TCGA-HF-A5NB-01 12 122212989 122212989 G A TMEM120B Missense_Mutation p.V287I 0.48 tolerated(0.55) benign(0.004) TCGA-HF-A5NB-01 12 122294532 122294532 C T HPD Splice_Site p.X67_splice 0.51 TCGA-HF-A5NB-01 12 122406048 122406048 C T WDR66 Missense_Mutation p.S915L 0.46 deleterious(0.03) benign(0.217) TCGA-HF-A5NB-01 12 124171430 124171430 C T TCTN2 Silent p.T204T 0.44 TCGA-HF-A5NB-01 12 124824566 124824566 C T NCOR2 Silent p.T1891T 0.41 TCGA-HF-A5NB-01 12 12588662 12588662 T C LOH12CR1 Silent p.H101H 0.61 TCGA-HF-A5NB-01 12 132490783 132490783 T C EP400 Missense_Mutation p.I1021T 0.44 unknown(0) TCGA-HF-A5NB-01 12 132491394 132491394 T - EP400 Frame_Shift_Del p.F1094Lfs*4 0.39 TCGA-HF-A5NB-01 12 132681572 132681572 G A GALNT9 3'UTR 0.36 TCGA-HF-A5NB-01 12 133220466 133220466 G A POLE Missense_Mutation p.A1416V 0.51 tolerated(0.07) benign(0.06) TCGA-HF-A5NB-01 12 133220519 133220520 AT - POLE Frame_Shift_Del p.Y1398* 0.34 TCGA-HF-A5NB-01 12 14778748 14778748 T C GUCY2C Missense_Mutation p.Q784R 0.08 tolerated(0.09) benign(0.147) TCGA-HF-A5NB-01 12 14778829 14778829 T - GUCY2C Frame_Shift_Del p.N757Mfs*8 0.29 TCGA-HF-A5NB-01 12 15035909 15035909 T G MGP Missense_Mutation p.E81A 0.39 deleterious(0.03) probably_damaging(0.919) TCGA-HF-A5NB-01 12 15262412 15262412 C - RERG Frame_Shift_Del p.E78Kfs*25 0.33 TCGA-HF-A5NB-01 12 18841025 18841025 T - PLCZ1 Frame_Shift_Del p.N530Mfs*22 0.31 TCGA-HF-A5NB-01 12 20522722 20522723 - G PDE3A Frame_Shift_Ins p.E171Gfs*49 0.39 TCGA-HF-A5NB-01 12 25398281 25398281 C T KRAS Missense_Mutation p.G13D 0.53 deleterious(0.04) possibly_damaging(0.506) TCGA-HF-A5NB-01 12 27129212 27129212 A - TM7SF3 Frame_Shift_Del p.F423Sfs*5 0.32 TCGA-HF-A5NB-01 12 27475087 27475087 C T STK38L Missense_Mutation p.A396V 0.39 deleterious(0.02) benign(0.128) TCGA-HF-A5NB-01 12 2800387 2800387 T - CACNA1C 3'UTR 0.43 TCGA-HF-A5NB-01 12 32134186 32134186 T C KIAA1551 Silent p.N99N 0.48 TCGA-HF-A5NB-01 12 34179976 34179976 T - ALG10 3'UTR 0.40 TCGA-HF-A5NB-01 12 39735383 39735383 C T KIF21A Silent p.E615E 0.45 TCGA-HF-A5NB-01 12 40345104 40345104 C T SLC2A13 Missense_Mutation p.C330Y 0.39 deleterious(0) probably_damaging(0.998) TCGA-HF-A5NB-01 12 40626125 40626125 T C LRRK2 Missense_Mutation p.M96T 0.42 deleterious(0) benign(0.047) TCGA-HF-A5NB-01 12 42711242 42711242 C T ZCRB1 Missense_Mutation p.G78D 0.07 deleterious(0.02) benign(0.253) TCGA-HF-A5NB-01 12 43822118 43822119 - T ADAMTS20 Frame_Shift_Ins p.L1291Tfs*2 0.28 TCGA-HF-A5NB-01 12 46598325 46598325 A - SLC38A1 Frame_Shift_Del p.F232Sfs*2 0.34 TCGA-HF-A5NB-01 12 48188644 48188644 C T HDAC7 Missense_Mutation p.G453R 0.40 tolerated(0.07) benign(0.145) TCGA-HF-A5NB-01 12 49298864 49298864 C T CCDC65 Nonsense_Mutation p.R90* 0.36 TCGA-HF-A5NB-01 12 49426391 49426391 C T KMT2D Missense_Mutation p.V4033I 0.69 unknown(0) TCGA-HF-A5NB-01 12 49435147 49435147 A G KMT2D Missense_Mutation p.S2136P 0.59 benign(0.078) TCGA-HF-A5NB-01 12 49721018 49721018 G A TROAP Missense_Mutation p.E266K 0.45 tolerated(0.1) benign(0.238) TCGA-HF-A5NB-01 12 50041995 50041995 C T FMNL3 Missense_Mutation p.R886Q 0.29 tolerated(0.59) benign(0.006) TCGA-HF-A5NB-01 12 50484150 50484150 C T SMARCD1 Missense_Mutation p.R334W 0.41 deleterious(0) probably_damaging(0.978) TCGA-HF-A5NB-01 12 51076944 51076944 T C DIP2B Silent p.N410N 0.47 TCGA-HF-A5NB-01 12 51385449 51385449 A C SLC11A2 Missense_Mutation p.F481V 0.73 deleterious(0) probably_damaging(0.982) TCGA-HF-A5NB-01 12 51467835 51467835 A G CSRNP2 Missense_Mutation p.L61P 0.43 tolerated(0.24) benign(0.001) TCGA-HF-A5NB-01 12 52681485 52681485 C A KRT81 Silent p.T307T 0.52 TCGA-HF-A5NB-01 12 52881690 52881690 G A KRT6A Silent p.V503V 0.33 TCGA-HF-A5NB-01 12 53449476 53449476 T C TENC1 Splice_Site p.X242_splice 0.42 TCGA-HF-A5NB-01 12 53879241 53879241 G C MAP3K12 Missense_Mutation p.D280E 0.40 tolerated(0.15) benign(0.277) TCGA-HF-A5NB-01 12 55421103 55421103 C T NEUROD4 Missense_Mutation p.H294Y 0.45 tolerated(0.18) possibly_damaging(0.759) TCGA-HF-A5NB-01 12 56648704 56648704 G A ANKRD52 Silent p.S165S 0.37 TCGA-HF-A5NB-01 12 56720445 56720445 T C PAN2 Silent p.T406T 0.48 TCGA-HF-A5NB-01 12 57112356 57112356 G - NACA Intron 0.29 TCGA-HF-A5NB-01 12 57627016 57627016 G A SHMT2 Missense_Mutation p.G304D 0.40 deleterious(0.01) possibly_damaging(0.743) TCGA-HF-A5NB-01 12 58207979 58207979 C T AVIL Missense_Mutation p.A33T 0.33 tolerated(0.22) benign(0.029) TCGA-HF-A5NB-01 12 5841729 5841729 G A ANO2 Missense_Mutation p.A501V 0.24 tolerated(0.3) benign(0.002) TCGA-HF-A5NB-01 12 62946889 62946889 T C MON2 Missense_Mutation p.F1049L 0.49 tolerated(0.18) possibly_damaging(0.715) TCGA-HF-A5NB-01 12 6438364 6438364 T C TNFRSF1A 3'UTR 0.50 TCGA-HF-A5NB-01 12 64829452 64829452 C T XPOT Missense_Mutation p.R911W 0.28 deleterious(0) possibly_damaging(0.794) TCGA-HF-A5NB-01 12 662501 662501 G A B4GALNT3 Missense_Mutation p.R471H 0.49 tolerated(0.69) benign(0) TCGA-HF-A5NB-01 12 66522888 66522888 T - LLPH 5'UTR 0.35 TCGA-HF-A5NB-01 12 70049362 70049362 G - BEST3 Frame_Shift_Del p.R445Gfs*40 0.35 TCGA-HF-A5NB-01 12 7069348 7069348 C T PTPN6 Silent p.Y509Y 0.56 TCGA-HF-A5NB-01 12 7295797 7295797 G - CLSTN3 Frame_Shift_Del p.D581Mfs*16 0.16 TCGA-HF-A5NB-01 12 75444803 75444803 A C KCNC2 Missense_Mutation p.L328V 0.44 tolerated(0.1) probably_damaging(0.999) TCGA-HF-A5NB-01 12 76425061 76425061 C A PHLDA1 Missense_Mutation p.G154V 0.15 deleterious_low_confidence(0) probably_damaging(1) TCGA-HF-A5NB-01 12 77449858 77449858 T - E2F7 Frame_Shift_Del p.N49Mfs*39 0.31 TCGA-HF-A5NB-01 12 78570953 78570954 - A NAV3 Frame_Shift_Ins p.S1722Vfs*10 0.32 TCGA-HF-A5NB-01 12 80730771 80730771 G A OTOGL Missense_Mutation p.R1607Q 0.67 deleterious(0) probably_damaging(0.999) TCGA-HF-A5NB-01 12 81741408 81741408 C T PPFIA2 Silent p.S712S 0.19 TCGA-HF-A5NB-01 12 8375338 8375338 G A FAM90A1 Missense_Mutation p.P159S 0.28 tolerated(0.77) benign(0.05) TCGA-HF-A5NB-01 12 85279315 85279315 T C SLC6A15 Missense_Mutation p.Y158C 0.40 deleterious(0) probably_damaging(0.999) TCGA-HF-A5NB-01 12 8904580 8904580 T C RIMKLB Missense_Mutation p.I145T 0.54 tolerated(0.06) possibly_damaging(0.752) TCGA-HF-A5NB-01 12 91348096 91348096 G A CCER1 Missense_Mutation p.R142C 0.44 deleterious(0) probably_damaging(0.942) TCGA-HF-A5NB-01 12 9248271 9248271 T C A2M Missense_Mutation p.D626G 0.49 deleterious(0.03) benign(0.271) TCGA-HF-A5NB-01 12 9311086 9311086 C A PZP Missense_Mutation p.W1075L 0.49 deleterious(0) probably_damaging(0.995) TCGA-HF-A5NB-01 12 93147990 93147990 C T PLEKHG7 Missense_Mutation p.A147V 0.51 tolerated(0.11) benign(0.009) TCGA-HF-A5NB-01 13 100637904 100637905 CT - ZIC2 Frame_Shift_Del p.S524Lfs*5 0.25 TCGA-HF-A5NB-01 13 101763504 101763504 C T NALCN Missense_Mutation p.V756M 0.45 tolerated(0.12) benign(0.09) TCGA-HF-A5NB-01 13 102029328 102029328 C T NALCN Missense_Mutation p.R152Q 0.47 deleterious(0) probably_damaging(0.999) TCGA-HF-A5NB-01 13 103449262 103449263 - T KDELC1 Frame_Shift_Ins p.D94Rfs*22 0.12 TCGA-HF-A5NB-01 13 106118563 106118563 A G DAOA 5'Flank 0.58 TCGA-HF-A5NB-01 13 109779690 109779690 C T MYO16 Silent p.A1259A 0.40 TCGA-HF-A5NB-01 13 110960440 110960440 C T COL4A2 Silent p.T23T 0.49 TCGA-HF-A5NB-01 13 113174262 113174262 C T TUBGCP3 Missense_Mutation p.A607T 0.47 deleterious(0) benign(0.444) TCGA-HF-A5NB-01 13 114083279 114083279 G A ADPRHL1 Missense_Mutation p.R212W 0.35 tolerated(0.16) probably_damaging(0.993) TCGA-HF-A5NB-01 13 115091388 115091388 G A CHAMP1 Missense_Mutation p.A691T 0.53 deleterious(0) probably_damaging(0.999) TCGA-HF-A5NB-01 13 20978127 20978127 A G CRYL1 3'UTR 0.61 TCGA-HF-A5NB-01 13 22067389 22067390 - A MICU2 Frame_Shift_Ins p.*435L 0.32 TCGA-HF-A5NB-01 13 23908660 23908660 A G SACS Missense_Mutation p.C3119R 0.44 probably_damaging(0.993) TCGA-HF-A5NB-01 13 26542799 26542799 G A ATP8A2 Missense_Mutation p.R1120Q 0.28 tolerated(0.27) benign(0.001) TCGA-HF-A5NB-01 13 29012430 29012430 G A FLT1 Silent p.H147H 0.47 TCGA-HF-A5NB-01 13 31035409 31035409 A G HMGB1 3'UTR 0.29 TCGA-HF-A5NB-01 13 31037833 31037834 - A HMGB1 Intron 0.31 TCGA-HF-A5NB-01 13 37678855 37678855 T C CSNK1A1L Missense_Mutation p.H180R 0.07 deleterious_low_confidence(0) benign(0.001) TCGA-HF-A5NB-01 13 42393519 42393519 G A VWA8 Silent p.S568S 0.46 TCGA-HF-A5NB-01 13 42784857 42784857 G A DGKH Silent p.S990S 0.48 TCGA-HF-A5NB-01 13 43543243 43543243 C T EPSTI1 Silent p.V106V 0.49 TCGA-HF-A5NB-01 13 44971490 44971490 G A SERP2 3'UTR 0.45 TCGA-HF-A5NB-01 13 45602078 45602078 A - GPALPP1 Frame_Shift_Del p.K323Nfs*5 0.35 TCGA-HF-A5NB-01 13 49086154 49086154 C - RCBTB2 Frame_Shift_Del p.E225Rfs*46 0.33 TCGA-HF-A5NB-01 13 52593050 52593050 T - ALG11 Frame_Shift_Del p.Y18Ifs*35 0.36 TCGA-HF-A5NB-01 13 61986328 61986328 T C PCDH20 Missense_Mutation p.N635S 0.42 deleterious(0) probably_damaging(0.999) TCGA-HF-A5NB-01 13 67799763 67799763 T C PCDH9 Missense_Mutation p.K937R 0.44 tolerated(1) benign(0.009) TCGA-HF-A5NB-01 13 75936453 75936453 G - TBC1D4 Frame_Shift_Del p.G264Efs*26 0.31 TCGA-HF-A5NB-01 13 77657276 77657276 C T MYCBP2 Missense_Mutation p.G3605R 0.36 probably_damaging(0.999) TCGA-HF-A5NB-01 13 79175786 79175786 C A POU4F1 Nonsense_Mutation p.E342* 0.28 TCGA-HF-A5NB-01 13 84455345 84455345 C T SLITRK1 Missense_Mutation p.G100R 0.15 deleterious(0) probably_damaging(0.999) TCGA-HF-A5NB-01 13 94197638 94197638 C T GPC6 Missense_Mutation p.R95C 0.43 deleterious(0) probably_damaging(0.93) TCGA-HF-A5NB-01 13 96237096 96237096 T - DZIP1 Frame_Shift_Del p.K806Nfs*22 0.30 TCGA-HF-A5NB-01 13 96251663 96251663 G A DZIP1 Missense_Mutation p.S498L 0.33 tolerated(0.43) benign(0.013) TCGA-HF-A5NB-01 13 96294039 96294039 G A DZIP1 Missense_Mutation p.A36V 0.44 tolerated(0.11) benign(0.118) TCGA-HF-A5NB-01 14 100758770 100758770 C T SLC25A29 Silent p.T254T 0.43 TCGA-HF-A5NB-01 14 101004528 101004528 G A BEGAIN Silent p.D520D 0.62 TCGA-HF-A5NB-01 14 101520681 101520681 T G MIR382 RNA 0.57 TCGA-HF-A5NB-01 14 101531693 101531693 C T MIR409 RNA 0.62 TCGA-HF-A5NB-01 14 102500765 102500765 C T DYNC1H1 Missense_Mutation p.A3577V 0.13 probably_damaging(1) TCGA-HF-A5NB-01 14 103986327 103986327 G A CKB Silent p.D340D 0.20 TCGA-HF-A5NB-01 14 105238717 105238717 G A AKT1 Silent p.H415H 0.36 TCGA-HF-A5NB-01 14 105409534 105409534 G A AHNAK2 Missense_Mutation p.A4085V 0.46 benign(0.055) TCGA-HF-A5NB-01 14 105478046 105478046 G A CDCA4 Missense_Mutation p.T74M 0.51 deleterious(0) probably_damaging(0.969) TCGA-HF-A5NB-01 14 105615623 105615623 C T JAG2 Missense_Mutation p.R546Q 0.47 tolerated(1) benign(0.001) TCGA-HF-A5NB-01 14 106360375 106360375 G A IGHD4-17 Missense_Mutation p.R3W 0.44 unknown(0) TCGA-HF-A5NB-01 14 106866612 106866612 C T IGHV3-38 Missense_Mutation p.V48I 0.34 deleterious_low_confidence(0.01) benign(0.003) TCGA-HF-A5NB-01 14 106963323 106963323 G A IGHV1-45 Missense_Mutation p.T15I 0.56 deleterious(0.03) benign(0.195) TCGA-HF-A5NB-01 14 21827743 21827743 C T SUPT16H Missense_Mutation p.R734Q 0.48 deleterious(0.01) benign(0.281) TCGA-HF-A5NB-01 14 21991633 21991633 G A SALL2 Silent p.S743S 0.37 TCGA-HF-A5NB-01 14 22392285 22392285 T - TRAV14DV4 5'UTR 0.48 TCGA-HF-A5NB-01 14 23072464 23072464 C T ABHD4 Silent p.R94R 0.51 TCGA-HF-A5NB-01 14 23467688 23467688 C T C14orf93 Missense_Mutation p.R182Q 0.38 tolerated_low_confidence(0.12) probably_damaging(0.947) TCGA-HF-A5NB-01 14 23533683 23533683 C - ACIN1 Frame_Shift_Del p.V833Cfs*39 0.31 TCGA-HF-A5NB-01 14 23588135 23588135 C T CEBPE Missense_Mutation p.D56N 0.39 deleterious(0) probably_damaging(0.978) TCGA-HF-A5NB-01 14 36003601 36003601 G C INSM2 Missense_Mutation p.G48A 0.47 tolerated(0.81) benign(0.014) TCGA-HF-A5NB-01 14 38724545 38724545 G A CLEC14A Missense_Mutation p.A228V 0.08 tolerated(0.37) benign(0.007) TCGA-HF-A5NB-01 14 39706137 39706138 AG - MIA2 Frame_Shift_Del p.R43Sfs*8 0.36 TCGA-HF-A5NB-01 14 39900890 39900890 G A FBXO33 Silent p.G159G 0.44 TCGA-HF-A5NB-01 14 45645955 45645955 A - FANCM Frame_Shift_Del p.V1336Lfs*2 0.42 TCGA-HF-A5NB-01 14 45711553 45711553 G A MIS18BP1 Missense_Mutation p.A276V 0.16 tolerated(0.38) benign(0.272) TCGA-HF-A5NB-01 14 45711579 45711579 C T MIS18BP1 Silent p.T267T 0.42 TCGA-HF-A5NB-01 14 50246968 50246971 CACT - KLHDC2 Frame_Shift_Del p.S272* 0.37 TCGA-HF-A5NB-01 14 51382636 51382636 C T PYGL Silent p.P382P 0.46 TCGA-HF-A5NB-01 14 53190708 53190708 G A PSMC6 Silent p.S349S 0.44 TCGA-HF-A5NB-01 14 55168888 55168888 T C SAMD4A Missense_Mutation p.M102T 0.54 tolerated(0.07) probably_damaging(0.918) TCGA-HF-A5NB-01 14 55836610 55836610 C T ATG14 Silent p.E402E 0.51 TCGA-HF-A5NB-01 14 57082687 57082687 G A TMEM260 Missense_Mutation p.E295K 0.48 tolerated(0.11) benign(0.096) TCGA-HF-A5NB-01 14 58030850 58030850 T C SLC35F4 3'UTR 0.54 TCGA-HF-A5NB-01 14 59112997 59112997 G A DACT1 Silent p.A552A 0.35 TCGA-HF-A5NB-01 14 59835592 59835592 T - DAAM1 3'UTR 0.30 TCGA-HF-A5NB-01 14 61997206 61997206 G A RP11-47I22.4 Missense_Mutation p.A57T 0.41 deleterious(0) probably_damaging(0.995) TCGA-HF-A5NB-01 14 64447814 64447814 T C SYNE2 Missense_Mutation p.C587R 0.04 possibly_damaging(0.473) TCGA-HF-A5NB-01 14 64529612 64529612 A C SYNE2 Missense_Mutation p.K3404T 0.39 probably_damaging(0.999) TCGA-HF-A5NB-01 14 69256406 69256406 G A ZFP36L1 Silent p.H287H 0.42 TCGA-HF-A5NB-01 14 69369274 69369274 C T ACTN1 Missense_Mutation p.V228I 0.50 tolerated(0.24) benign(0.001) TCGA-HF-A5NB-01 14 71517405 71517405 A G PCNX Missense_Mutation p.T1459A 0.49 tolerated(0.09) probably_damaging(0.995) TCGA-HF-A5NB-01 14 75230947 75230947 C - YLPM1 Frame_Shift_Del p.P254Lfs*35 0.37 TCGA-HF-A5NB-01 14 75388144 75388144 C T RPS6KL1 Missense_Mutation p.R34H 0.42 tolerated(0.07) benign(0.035) TCGA-HF-A5NB-01 14 75514338 75514338 T - MLH3 Frame_Shift_Del p.N674Ifs*6 0.39 TCGA-HF-A5NB-01 14 76135845 76135845 A T TTLL5 Missense_Mutation p.N54I 0.48 deleterious(0.04) benign(0.025) TCGA-HF-A5NB-01 14 80327923 80327923 G A NRXN3 Intron 0.40 TCGA-HF-A5NB-01 14 80963818 80963818 T - CEP128 3'UTR 0.27 TCGA-HF-A5NB-01 14 81302590 81302590 T A CEP128 Missense_Mutation p.N339I 0.47 tolerated(0.1) benign(0.015) TCGA-HF-A5NB-01 14 86089537 86089537 G T FLRT2 Missense_Mutation p.S560I 0.38 deleterious(0.02) possibly_damaging(0.573) TCGA-HF-A5NB-01 14 88946026 88946026 G A PTPN21 Silent p.R583R 0.62 TCGA-HF-A5NB-01 14 89319396 89319396 T C TTC8 Missense_Mutation p.Y236H 0.37 tolerated(0.17) possibly_damaging(0.542) TCGA-HF-A5NB-01 14 90429831 90429832 - A TDP1 Frame_Shift_Ins p.R126Kfs*3 0.27 TCGA-HF-A5NB-01 14 91948011 91948011 A G SMEK1 Missense_Mutation p.L275P 0.51 deleterious(0) probably_damaging(0.994) TCGA-HF-A5NB-01 14 93118511 93118511 G A RIN3 Missense_Mutation p.A373T 0.33 tolerated(0.19) benign(0.061) TCGA-HF-A5NB-01 14 93676296 93676296 A G RP11-371E8.4 Missense_Mutation p.T112A 0.30 tolerated(0.11) possibly_damaging(0.771) TCGA-HF-A5NB-01 14 94417547 94417547 C T ASB2 Silent p.Q226Q 0.46 TCGA-HF-A5NB-01 14 94750205 94750205 A G SERPINA10 3'UTR 0.64 TCGA-HF-A5NB-01 15 100331116 100331116 T C AC090825.1 5'Flank 0.39 TCGA-HF-A5NB-01 15 102244069 102244069 A T TARSL2 Missense_Mutation p.I356N 0.43 deleterious(0) probably_damaging(0.967) TCGA-HF-A5NB-01 15 22332594 22332594 T - RP11-69H14.6 RNA 0.22 TCGA-HF-A5NB-01 15 22383416 22383416 G A OR4N4 Missense_Mutation p.R315K 0.17 tolerated_low_confidence(0.22) benign(0.067) TCGA-HF-A5NB-01 15 24921213 24921213 G A NPAP1 Missense_Mutation p.A67T 0.46 tolerated(0.34) possibly_damaging(0.695) TCGA-HF-A5NB-01 15 25200074 25200074 T C SNRPN Intron 0.30 TCGA-HF-A5NB-01 15 25474188 25474188 T C SNORD115-32 RNA 0.46 TCGA-HF-A5NB-01 15 25481314 25481314 A G SNORD115-37 5'Flank 0.43 TCGA-HF-A5NB-01 15 25494418 25494418 C G SNORD115-43 RNA 0.17 TCGA-HF-A5NB-01 15 29406144 29406144 C T APBA2 Silent p.I701I 0.38 TCGA-HF-A5NB-01 15 29561752 29561752 C T NDNL2 Missense_Mutation p.G53E 0.42 tolerated(0.12) possibly_damaging(0.546) TCGA-HF-A5NB-01 15 30053365 30053365 C T TJP1 Silent p.S329S 0.08 TCGA-HF-A5NB-01 15 31359390 31359390 C T TRPM1 Missense_Mutation p.G182D 0.07 deleterious(0) probably_damaging(1) TCGA-HF-A5NB-01 15 32976839 32976839 C T SCG5 Missense_Mutation p.P153L 0.40 deleterious(0.01) probably_damaging(0.998) TCGA-HF-A5NB-01 15 33765647 33765647 G A RYR3 Missense_Mutation p.A27T 0.44 benign(0.086) TCGA-HF-A5NB-01 15 34123214 34123214 T C RYR3 Silent p.D3795D 0.48 TCGA-HF-A5NB-01 15 34163232 34163232 C A AVEN Splice_Site p.X173_splice 0.32 TCGA-HF-A5NB-01 15 38766467 38766467 G A FAM98B Missense_Mutation p.V233I 0.50 tolerated(0.32) benign(0.309) TCGA-HF-A5NB-01 15 40557130 40557130 G A PAK6 Silent p.R48R 0.05 TCGA-HF-A5NB-01 15 40565646 40565646 C T PAK6 Silent p.D530D 0.49 TCGA-HF-A5NB-01 15 41193033 41193033 C T VPS18 Missense_Mutation p.R673C 0.45 deleterious(0) possibly_damaging(0.892) TCGA-HF-A5NB-01 15 41771390 41771390 G C RTF1 Missense_Mutation p.M636I 0.46 tolerated(0.46) benign(0.007) TCGA-HF-A5NB-01 15 42147546 42147546 C T SPTBN5 Missense_Mutation p.G3100D 0.10 possibly_damaging(0.888) TCGA-HF-A5NB-01 15 43023982 43023982 G A CDAN1 Silent p.G525G 0.49 TCGA-HF-A5NB-01 15 43525820 43525820 C T TGM5 Silent p.S647S 0.33 TCGA-HF-A5NB-01 15 43818781 43818781 C T MAP1A Missense_Mutation p.R1704W 0.42 probably_damaging(1) TCGA-HF-A5NB-01 15 44105530 44105530 G A MFAP1 Missense_Mutation p.R215C 0.40 deleterious(0) probably_damaging(0.964) TCGA-HF-A5NB-01 15 45440623 45440623 C T DUOX1 Silent p.R932R 0.44 TCGA-HF-A5NB-01 15 48787367 48787367 G C FBN1 Missense_Mutation p.S877C 0.43 probably_damaging(0.993) TCGA-HF-A5NB-01 15 49135637 49135637 G T SHC4 Silent p.A484A 0.42 TCGA-HF-A5NB-01 15 50519224 50519224 A G SLC27A2 Missense_Mutation p.N436D 0.49 tolerated(0.23) benign(0.001) TCGA-HF-A5NB-01 15 51289952 51289952 A G AP4E1 Missense_Mutation p.T926A 0.64 tolerated(0.51) benign(0.004) TCGA-HF-A5NB-01 15 53081565 53081565 C A ONECUT1 Missense_Mutation p.A173S 0.06 tolerated(0.89) benign(0.001) TCGA-HF-A5NB-01 15 56961150 56961150 T - ZNF280D Frame_Shift_Del p.G473Efs*13 0.24 TCGA-HF-A5NB-01 15 58306465 58306467 GTT - ALDH1A2 In_Frame_Del p.N44del 0.44 TCGA-HF-A5NB-01 15 62978908 62978908 C T TLN2 Silent p.R342R 0.17 TCGA-HF-A5NB-01 15 63951950 63951950 T C HERC1 Missense_Mutation p.T3137A 0.37 probably_damaging(0.986) TCGA-HF-A5NB-01 15 66587469 66587469 A C DIS3L Silent p.R95R 0.49 TCGA-HF-A5NB-01 15 66795228 66795228 G A RPL4 Intron 0.46 TCGA-HF-A5NB-01 15 67793139 67793139 T - IQCH 3'UTR 0.36 TCGA-HF-A5NB-01 15 71256270 71256270 C T LRRC49 Missense_Mutation p.T312M 0.41 deleterious(0) probably_damaging(0.996) TCGA-HF-A5NB-01 15 72535030 72535030 T - PARP6 Frame_Shift_Del p.G525Dfs*18 0.33 TCGA-HF-A5NB-01 15 73027498 73027498 T C BBS4 Missense_Mutation p.Y361H 0.21 deleterious(0) probably_damaging(0.987) TCGA-HF-A5NB-01 15 74327656 74327656 C - PML Intron 0.39 TCGA-HF-A5NB-01 15 74623335 74623337 AGA - CCDC33 In_Frame_Del p.K521del 0.59 TCGA-HF-A5NB-01 15 74964011 74964011 C T EDC3 Missense_Mutation p.G90D 0.50 tolerated(0.06) benign(0.058) TCGA-HF-A5NB-01 15 75656380 75656380 T C MAN2C1 Silent p.Q250Q 0.10 TCGA-HF-A5NB-01 15 76462155 76462155 A G C15orf27 Splice_Site p.X153_splice 0.45 TCGA-HF-A5NB-01 15 77287803 77287804 - G PSTPIP1 5'UTR 0.35 TCGA-HF-A5NB-01 15 79051865 79051865 G A ADAMTS7 Silent p.G1653G 0.50 TCGA-HF-A5NB-01 15 83492028 83492028 C T WHAMM Missense_Mutation p.R483W 0.29 deleterious(0) probably_damaging(0.999) TCGA-HF-A5NB-01 15 85198477 85198477 T C NMB 3'UTR 0.20 TCGA-HF-A5NB-01 15 85400481 85400481 T C ALPK3 Missense_Mutation p.C1040R 0.55 tolerated_low_confidence(0.31) benign(0.003) TCGA-HF-A5NB-01 15 86807996 86807996 T C AGBL1 Missense_Mutation p.F486L 0.44 tolerated(0.06) possibly_damaging(0.669) TCGA-HF-A5NB-01 15 88522441 88522441 C T NTRK3 Intron 0.42 TCGA-HF-A5NB-01 15 89386646 89386646 G A ACAN Missense_Mutation p.C273Y 0.38 deleterious(0) unknown(0) TCGA-HF-A5NB-01 15 89422324 89422324 A G HAPLN3 Missense_Mutation p.Y224H 0.54 deleterious(0) probably_damaging(1) TCGA-HF-A5NB-01 15 89836008 89836008 G A FANCI Silent p.E694E 0.42 TCGA-HF-A5NB-01 15 90280803 90280803 G T WDR93 Splice_Site p.X537_splice 0.25 TCGA-HF-A5NB-01 15 90809018 90809018 G - NGRN Frame_Shift_Del p.V27Wfs*31 0.40 TCGA-HF-A5NB-01 15 91182002 91182002 T G CRTC3 Silent p.G501G 0.46 TCGA-HF-A5NB-01 15 91436520 91436520 G - FES Splice_Site p.X642_splice 0.37 TCGA-HF-A5NB-01 16 10527501 10527501 G T ATF7IP2 Nonsense_Mutation p.E319* 0.35 TCGA-HF-A5NB-01 16 11001276 11001276 G A CIITA Missense_Mutation p.G643S 0.15 tolerated(0.31) benign(0.014) TCGA-HF-A5NB-01 16 11114151 11114151 G A CLEC16A Missense_Mutation p.A469T 0.46 tolerated(0.32) benign(0.012) TCGA-HF-A5NB-01 16 136766 136766 C T NPRL3 Missense_Mutation p.V549M 0.40 deleterious(0) possibly_damaging(0.606) TCGA-HF-A5NB-01 16 14976505 14976505 C T NOMO1 Missense_Mutation p.R1028W 0.37 deleterious(0) probably_damaging(0.996) TCGA-HF-A5NB-01 16 15026795 15026795 G A NPIPA1 5'Flank 0.32 TCGA-HF-A5NB-01 16 15131990 15131990 T - NTAN1 Frame_Shift_Del p.K277Nfs*83 0.29 TCGA-HF-A5NB-01 16 1536142 1536142 C - PTX4 Frame_Shift_Del p.G407Afs*43 0.36 TCGA-HF-A5NB-01 16 1576750 1576750 C T IFT140 Missense_Mutation p.R816Q 0.62 tolerated(0.13) possibly_damaging(0.709) TCGA-HF-A5NB-01 16 1818735 1818735 C T MAPK8IP3 Silent p.G1307G 0.55 TCGA-HF-A5NB-01 16 20043469 20043469 C T GPR139 Missense_Mutation p.R217H 0.39 tolerated(0.06) probably_damaging(0.998) TCGA-HF-A5NB-01 16 2048283 2048283 G A ZNF598 Missense_Mutation p.R889W 0.42 possibly_damaging(0.84) TCGA-HF-A5NB-01 16 20634743 20634743 G A ACSM1 3'UTR 0.44 TCGA-HF-A5NB-01 16 20792324 20792324 G A ACSM3 Missense_Mutation p.V271M 0.50 tolerated(0.08) probably_damaging(0.933) TCGA-HF-A5NB-01 16 2159427 2159427 C T PKD1 Missense_Mutation p.G1914D 0.49 probably_damaging(0.998) TCGA-HF-A5NB-01 16 216356 216356 G A HBM Missense_Mutation p.R61H 0.33 deleterious(0) possibly_damaging(0.542) TCGA-HF-A5NB-01 16 2228537 2228537 C T CASKIN1 3'UTR 0.38 TCGA-HF-A5NB-01 16 22358917 22358917 G A CDR2 Missense_Mutation p.A245V 0.09 tolerated(0.08) possibly_damaging(0.865) TCGA-HF-A5NB-01 16 23669889 23669889 A G DCTN5 Missense_Mutation p.H60R 0.48 deleterious(0.04) benign(0.009) TCGA-HF-A5NB-01 16 23678480 23678480 G A DCTN5 3'UTR 0.45 TCGA-HF-A5NB-01 16 23767237 23767237 C T CHP2 Silent p.F70F 0.49 TCGA-HF-A5NB-01 16 25228688 25228688 C T AQP8 Missense_Mutation p.T61M 0.44 tolerated(0.11) benign(0.017) TCGA-HF-A5NB-01 16 25255185 25255185 G A ZKSCAN2 Silent p.C634C 0.53 TCGA-HF-A5NB-01 16 2550423 2550423 G A TBC1D24 Missense_Mutation p.R486H 0.55 deleterious(0.05) probably_damaging(0.994) TCGA-HF-A5NB-01 16 28843629 28843629 A G ATXN2L Silent p.S475S 0.45 TCGA-HF-A5NB-01 16 28915056 28915056 G A ATP2A1 Intron 0.46 TCGA-HF-A5NB-01 16 28943851 28943851 G - CD19 Frame_Shift_Del p.G93Afs*37 0.37 TCGA-HF-A5NB-01 16 2903146 2903146 C - PRSS22 Frame_Shift_Del p.G301Vfs*113 0.14 TCGA-HF-A5NB-01 16 29809921 29809921 G A KIF22 Silent p.T134T 0.45 TCGA-HF-A5NB-01 16 29818051 29818051 T C MAZ Missense_Mutation p.L10P 0.33 deleterious_low_confidence(0) unknown(0) TCGA-HF-A5NB-01 16 29842329 29842329 G A MVP Missense_Mutation p.A86T 0.20 deleterious(0) benign(0.17) TCGA-HF-A5NB-01 16 30021353 30021353 G - DOC2A Frame_Shift_Del p.P64Lfs*27 0.34 TCGA-HF-A5NB-01 16 30535725 30535725 T C ZNF768 3'UTR 0.60 TCGA-HF-A5NB-01 16 3063714 3063714 C T CLDN9 Silent p.I117I 0.45 TCGA-HF-A5NB-01 16 3073266 3073266 G - HCFC1R1 Frame_Shift_Del p.M84* 0.35 TCGA-HF-A5NB-01 16 30970054 30970054 T C SETD1A Translation_Start_Site p.M1? 0.35 possibly_damaging(0.775) TCGA-HF-A5NB-01 16 30976045 30976045 G A SETD1A Missense_Mutation p.A328T 0.39 benign(0.002) TCGA-HF-A5NB-01 16 3188491 3188491 G A ZNF213 Missense_Mutation p.V158M 0.24 tolerated(0.11) benign(0.388) TCGA-HF-A5NB-01 16 32891889 32891889 T C SLC6A10P RNA 0.39 TCGA-HF-A5NB-01 16 335354 335354 C T PDIA2 Silent p.L280L 0.36 TCGA-HF-A5NB-01 16 335547 335547 C T PDIA2 Silent p.H321H 0.33 TCGA-HF-A5NB-01 16 34739672 34739672 C T RP11-80F22.15 RNA 0.23 TCGA-HF-A5NB-01 16 3707211 3707211 C T DNASE1 Silent p.F191F 0.52 TCGA-HF-A5NB-01 16 3779497 3779497 G A CREBBP Missense_Mutation p.R1851C 0.45 unknown(0) TCGA-HF-A5NB-01 16 4312652 4312652 C T TFAP4 Missense_Mutation p.R47Q 0.35 deleterious(0) probably_damaging(0.998) TCGA-HF-A5NB-01 16 48141283 48141283 C T ABCC12 Missense_Mutation p.A809T 0.16 tolerated(1) benign(0.003) TCGA-HF-A5NB-01 16 48175187 48175187 A G ABCC12 Missense_Mutation p.F118S 0.38 deleterious(0) possibly_damaging(0.614) TCGA-HF-A5NB-01 16 4861209 4861209 C T GLYR1 Missense_Mutation p.V517I 0.45 tolerated(0.11) benign(0.01) TCGA-HF-A5NB-01 16 50733765 50733765 G A NOD2 Missense_Mutation p.S147N 0.48 tolerated(0.86) benign(0.02) TCGA-HF-A5NB-01 16 53679839 53679839 A T RPGRIP1L Missense_Mutation p.I794N 0.44 deleterious(0) probably_damaging(0.992) TCGA-HF-A5NB-01 16 55363090 55363090 C T IRX6 Silent p.C400C 0.47 TCGA-HF-A5NB-01 16 56466592 56466592 C T NUDT21 3'UTR 0.37 TCGA-HF-A5NB-01 16 57060426 57060426 T C NLRC5 Missense_Mutation p.L524P 0.45 deleterious(0) probably_damaging(0.996) TCGA-HF-A5NB-01 16 58552761 58552761 A - SETD6 Frame_Shift_Del p.N418Tfs*5 0.29 TCGA-HF-A5NB-01 16 58612691 58612691 C T CNOT1 Missense_Mutation p.R499H 0.51 deleterious(0.03) probably_damaging(0.977) TCGA-HF-A5NB-01 16 62055234 62055234 G - CDH8 Frame_Shift_Del p.P25Lfs*8 0.29 TCGA-HF-A5NB-01 16 66547632 66547632 A G TK2 Splice_Site p.X233_splice 0.37 TCGA-HF-A5NB-01 16 67574588 67574588 C T FAM65A Missense_Mutation p.T281M 0.40 tolerated(0.07) benign(0.372) TCGA-HF-A5NB-01 16 67660616 67660616 C T CTCF Nonsense_Mutation p.Q506* 0.32 TCGA-HF-A5NB-01 16 67861916 67861916 G A TSNAXIP1 3'UTR 0.42 TCGA-HF-A5NB-01 16 67862087 67862087 G - CENPT 3'UTR 0.38 TCGA-HF-A5NB-01 16 68867505 68867505 A - CDH1 3'UTR 0.53 TCGA-HF-A5NB-01 16 70502836 70502836 T C FUK Missense_Mutation p.Y250H 0.45 deleterious(0) probably_damaging(1) TCGA-HF-A5NB-01 16 70698100 70698100 C T MTSS1L Missense_Mutation p.R575H 0.58 deleterious(0) probably_damaging(0.998) TCGA-HF-A5NB-01 16 70941317 70941317 G A HYDIN Missense_Mutation p.T2825M 0.22 benign(0.212) TCGA-HF-A5NB-01 16 71512881 71512881 C T ZNF19 Missense_Mutation p.V21M 0.42 deleterious(0.01) possibly_damaging(0.867) TCGA-HF-A5NB-01 16 71668196 71668196 G - MARVELD3 Intron 0.32 TCGA-HF-A5NB-01 16 731436 731436 A G STUB1 Splice_Site p.X120_splice 0.42 TCGA-HF-A5NB-01 16 74927701 74927701 G A WDR59 Nonsense_Mutation p.R626* 0.41 TCGA-HF-A5NB-01 16 7680639 7680639 A G RBFOX1 Silent p.G257G 0.31 TCGA-HF-A5NB-01 16 78011555 78011555 A G VAT1L Missense_Mutation p.D408G 0.14 deleterious_low_confidence(0.02) probably_damaging(0.971) TCGA-HF-A5NB-01 16 81095073 81095073 G A C16orf46 Missense_Mutation p.P294L 0.47 tolerated(0.09) benign(0.003) TCGA-HF-A5NB-01 16 81922784 81922784 G A PLCG2 Nonsense_Mutation p.W258* 0.30 TCGA-HF-A5NB-01 16 87369044 87369044 G T FBXO31 Missense_Mutation p.R288S 0.42 deleterious(0) probably_damaging(0.999) TCGA-HF-A5NB-01 16 87454235 87454235 C T ZCCHC14 Missense_Mutation p.V173M 0.52 tolerated(0.43) benign(0.006) TCGA-HF-A5NB-01 16 88601410 88601410 C T ZFPM1 3'UTR 0.44 TCGA-HF-A5NB-01 16 88747851 88747851 T C SNAI3 Silent p.P116P 0.42 TCGA-HF-A5NB-01 16 88901687 88901687 C T GALNS Missense_Mutation p.A278T 0.57 tolerated(0.56) benign(0.005) TCGA-HF-A5NB-01 16 89289623 89289623 T C ZNF778 Missense_Mutation p.L59P 0.43 deleterious(0) probably_damaging(0.998) TCGA-HF-A5NB-01 16 89806290 89806290 T C ZNF276 3'Flank 0.35 TCGA-HF-A5NB-01 17 10298710 10298710 A C MYH8 Missense_Mutation p.L1568V 0.64 deleterious(0.01) possibly_damaging(0.517) TCGA-HF-A5NB-01 17 1576806 1576806 C G PRPF8 Missense_Mutation p.V1168L 0.38 tolerated(0.53) benign(0.001) TCGA-HF-A5NB-01 17 16455342 16455342 T G ZNF287 Missense_Mutation p.K705T 0.49 tolerated(0.1) probably_damaging(0.993) TCGA-HF-A5NB-01 17 16612581 16612581 G A CCDC144A Missense_Mutation p.D404N 0.39 deleterious(0.01) possibly_damaging(0.821) TCGA-HF-A5NB-01 17 16612888 16612888 T C CCDC144A Missense_Mutation p.V506A 0.14 deleterious(0.03) benign(0.299) TCGA-HF-A5NB-01 17 17699596 17699596 C A RAI1 Missense_Mutation p.P1112T 0.06 tolerated(0.06) possibly_damaging(0.864) TCGA-HF-A5NB-01 17 18167062 18167062 C A MIEF2 Missense_Mutation p.L128I 0.43 tolerated(0.41) benign(0.08) TCGA-HF-A5NB-01 17 19284432 19284432 C T MAPK7 Missense_Mutation p.R304C 0.31 deleterious(0.04) unknown(0) TCGA-HF-A5NB-01 17 21731489 21731489 C - UBBP4 Frame_Shift_Del p.D191Ifs*35 0.36 TCGA-HF-A5NB-01 17 2603765 2603765 G A CLUH Nonsense_Mutation p.R355* 0.56 TCGA-HF-A5NB-01 17 26851946 26851946 G A FOXN1 Silent p.G183G 0.38 TCGA-HF-A5NB-01 17 26854365 26854365 C - FOXN1 Frame_Shift_Del p.F231Sfs*71 0.36 TCGA-HF-A5NB-01 17 27051500 27051500 G A TLCD1 3'UTR 0.45 TCGA-HF-A5NB-01 17 27286373 27286373 C T SEZ6 Missense_Mutation p.R630H 0.49 deleterious(0.01) probably_damaging(0.986) TCGA-HF-A5NB-01 17 29324268 29324268 C T RNF135 Silent p.L230L 0.33 TCGA-HF-A5NB-01 17 293264 293264 G A FAM101B Silent p.Y42Y 0.07 TCGA-HF-A5NB-01 17 29557892 29557892 T C NF1 Missense_Mutation p.V1049A 0.16 deleterious(0.03) probably_damaging(0.93) TCGA-HF-A5NB-01 17 29576075 29576075 A G NF1 Missense_Mutation p.I1350V 0.44 deleterious(0) possibly_damaging(0.881) TCGA-HF-A5NB-01 17 29653028 29653028 G A NF1 Missense_Mutation p.A1676T 0.51 tolerated(0.1) benign(0.271) TCGA-HF-A5NB-01 17 29701251 29701251 C - NF1 3'UTR 0.30 TCGA-HF-A5NB-01 17 30687623 30687623 A - ZNF207 Frame_Shift_Del p.K107Rfs*57 0.23 TCGA-HF-A5NB-01 17 31618836 31618836 G A ASIC2 Silent p.L100L 0.49 TCGA-HF-A5NB-01 17 3181258 3181258 T C OR3A2 3'UTR 0.11 TCGA-HF-A5NB-01 17 33434054 33434054 G A RAD51D Missense_Mutation p.R165C 0.43 deleterious(0.01) probably_damaging(0.975) TCGA-HF-A5NB-01 17 33904176 33904176 C T PEX12 Silent p.Q187Q 0.51 TCGA-HF-A5NB-01 17 34074112 34074112 G - GAS2L2 Frame_Shift_Del p.T337Pfs*25 0.33 TCGA-HF-A5NB-01 17 34105989 34105989 T C MMP28 Silent p.T94T 0.09 TCGA-HF-A5NB-01 17 35614709 35614709 G A ACACA Missense_Mutation p.A581V 0.06 tolerated(0.05) probably_damaging(0.994) TCGA-HF-A5NB-01 17 36454530 36454530 G A MRPL45 Missense_Mutation p.R61Q 0.35 tolerated(0.09) benign(0.063) TCGA-HF-A5NB-01 17 36485586 36485586 T - GPR179 Frame_Shift_Del p.K1289Rfs*12 0.36 TCGA-HF-A5NB-01 17 37006474 37006475 - A RPL23 Intron 0.38 TCGA-HF-A5NB-01 17 37368634 37368634 C A STAC2 Missense_Mutation p.G383C 0.43 deleterious(0) possibly_damaging(0.836) TCGA-HF-A5NB-01 17 3807233 3807233 G A P2RX1 Silent p.D171D 0.42 TCGA-HF-A5NB-01 17 38633838 38633838 C T TNS4 3'UTR 0.44 TCGA-HF-A5NB-01 17 39525760 39525760 G A KRT33B Silent p.N81N 0.52 TCGA-HF-A5NB-01 17 39658497 39658497 T C KRT13 Intron 0.67 TCGA-HF-A5NB-01 17 3974201 3974201 G A ZZEF1 Silent p.D1284D 0.43 TCGA-HF-A5NB-01 17 40010211 40010211 C T KLHL11 Silent p.A636A 0.46 TCGA-HF-A5NB-01 17 40061846 40061846 G A ACLY Missense_Mutation p.P311L 0.48 tolerated(0.05) probably_damaging(1) TCGA-HF-A5NB-01 17 40107251 40107251 C T TTC25 RNA 0.35 TCGA-HF-A5NB-01 17 40343229 40343229 C A GHDC Splice_Site p.X297_splice 0.35 TCGA-HF-A5NB-01 17 40695361 40695361 A G NAGLU Missense_Mutation p.E446G 0.42 deleterious(0) probably_damaging(1) TCGA-HF-A5NB-01 17 40733898 40733898 T C FAM134C Missense_Mutation p.D445G 0.48 deleterious(0) probably_damaging(0.999) TCGA-HF-A5NB-01 17 40815456 40815456 G A TUBG2 Missense_Mutation p.V181I 0.46 deleterious(0.04) probably_damaging(0.998) TCGA-HF-A5NB-01 17 40837375 40837375 G A CNTNAP1 Missense_Mutation p.A218T 0.38 tolerated(0.24) benign(0.081) TCGA-HF-A5NB-01 17 40864370 40864370 A G EZH1 Silent p.H446H 0.49 TCGA-HF-A5NB-01 17 41003870 41003870 C T AOC3 Silent p.P170P 0.41 TCGA-HF-A5NB-01 17 41102629 41102629 G A AARSD1 Missense_Mutation p.T407M 0.34 tolerated(0.11) benign(0.139) TCGA-HF-A5NB-01 17 41926083 41926085 AGA - CD300LG In_Frame_Del p.E70del 0.36 TCGA-HF-A5NB-01 17 42463278 42463278 G A ITGA2B Nonsense_Mutation p.R108* 0.38 TCGA-HF-A5NB-01 17 42483347 42483348 - T GPATCH8 Frame_Shift_Ins p.Q189Tfs*10 0.33 TCGA-HF-A5NB-01 17 42941052 42941052 C T EFTUD2 Missense_Mutation p.G462S 0.49 tolerated(0.15) benign(0.001) TCGA-HF-A5NB-01 17 42979825 42979825 A G CCDC103 Silent p.L123L 0.47 TCGA-HF-A5NB-01 17 43013693 43013693 G A KIF18B Missense_Mutation p.T7M 0.52 tolerated(0.37) benign(0.02) TCGA-HF-A5NB-01 17 43045034 43045034 G A C1QL1 Missense_Mutation p.P128L 0.37 tolerated(0.12) possibly_damaging(0.504) TCGA-HF-A5NB-01 17 43924061 43924061 C T SPPL2C Missense_Mutation p.R597C 0.39 tolerated_low_confidence(0.14) benign(0) TCGA-HF-A5NB-01 17 4442331 4442331 C - MYBBP1A Intron 0.31 TCGA-HF-A5NB-01 17 45412715 45412715 A - EFCAB13 Frame_Shift_Del p.I64Yfs*6 0.27 TCGA-HF-A5NB-01 17 46110652 46110652 A - COPZ2 Frame_Shift_Del p.F93Lfs*4 0.42 TCGA-HF-A5NB-01 17 46620917 46620917 C T HOXB2 Missense_Mutation p.R195H 0.40 deleterious(0) probably_damaging(1) TCGA-HF-A5NB-01 17 47656170 47656170 C - NXPH3 Frame_Shift_Del p.P91Hfs*6 0.33 TCGA-HF-A5NB-01 17 48433967 48433967 C - XYLT2 Frame_Shift_Del p.G529Afs*78 0.36 TCGA-HF-A5NB-01 17 48761428 48761428 G A ABCC3 Missense_Mutation p.G1358D 0.52 deleterious(0) probably_damaging(1) TCGA-HF-A5NB-01 17 4906118 4906118 C T KIF1C Missense_Mutation p.T234M 0.46 deleterious(0) benign(0.107) TCGA-HF-A5NB-01 17 50235098 50235098 C T CA10 Missense_Mutation p.V17I 0.44 tolerated(0.71) benign(0.028) TCGA-HF-A5NB-01 17 5322932 5322932 C T NUP88 Silent p.L13L 0.43 TCGA-HF-A5NB-01 17 55950099 55950099 C T CUEDC1 Missense_Mutation p.A237T 0.37 deleterious(0) probably_damaging(0.984) TCGA-HF-A5NB-01 17 56353007 56353007 G A MPO Missense_Mutation p.R421W 0.45 deleterious(0) probably_damaging(1) TCGA-HF-A5NB-01 17 56388484 56388484 G A BZRAP1 Missense_Mutation p.R1058C 0.36 deleterious(0) probably_damaging(0.991) TCGA-HF-A5NB-01 17 56435161 56435161 C - RNF43 Frame_Shift_Del p.G659Vfs*41 0.39 TCGA-HF-A5NB-01 17 56439937 56439937 G A RNF43 Missense_Mutation p.R219C 0.36 deleterious(0) probably_damaging(1) TCGA-HF-A5NB-01 17 56536272 56536272 C T HSF5 Missense_Mutation p.R526H 0.33 tolerated(0.42) benign(0.001) TCGA-HF-A5NB-01 17 58035794 58035794 A T RNFT1 Nonsense_Mutation p.L235* 0.26 TCGA-HF-A5NB-01 17 59161890 59161890 G A BCAS3 Missense_Mutation p.R812Q 0.40 deleterious(0.03) probably_damaging(0.929) TCGA-HF-A5NB-01 17 60042387 60042387 C T MED13 Silent p.P1608P 0.14 TCGA-HF-A5NB-01 17 61768554 61768554 T G MAP3K3 Silent p.A466A 0.40 TCGA-HF-A5NB-01 17 61988071 61988071 A - CSHL1 Intron 0.30 TCGA-HF-A5NB-01 17 62049081 62049081 C T SCN4A Splice_Site p.X204_splice 0.31 TCGA-HF-A5NB-01 17 62525445 62525445 C T CEP95 Missense_Mutation p.S449L 0.40 tolerated(0.2) probably_damaging(0.999) TCGA-HF-A5NB-01 17 67280136 67280136 C T ABCA5 Missense_Mutation p.V784I 0.45 deleterious(0) probably_damaging(0.997) TCGA-HF-A5NB-01 17 7130555 7130555 A G DVL2 Missense_Mutation p.V466A 0.39 deleterious(0) possibly_damaging(0.901) TCGA-HF-A5NB-01 17 7157905 7157905 G A ELP5 Silent p.L80L 0.46 TCGA-HF-A5NB-01 17 7162260 7162260 T C ELP5 Intron 0.56 TCGA-HF-A5NB-01 17 7225204 7225204 T G NEURL4 Silent p.R951R 0.40 TCGA-HF-A5NB-01 17 722705 722705 C T NXN Missense_Mutation p.R265H 0.51 deleterious(0.04) probably_damaging(0.963) TCGA-HF-A5NB-01 17 72862960 72862960 A T FDXR Silent p.P115P 0.18 TCGA-HF-A5NB-01 17 73493912 73493912 C T KIAA0195 Missense_Mutation p.T1153M 0.45 deleterious(0) probably_damaging(1) TCGA-HF-A5NB-01 17 73498155 73498156 CT - CASKIN2 Frame_Shift_Del p.E1000Afs*35 0.36 TCGA-HF-A5NB-01 17 7400199 7400199 A G POLR2A Silent p.P218P 0.34 TCGA-HF-A5NB-01 17 7403979 7403979 A G POLR2A Missense_Mutation p.M565V 0.38 probably_damaging(0.92) TCGA-HF-A5NB-01 17 7466956 7466956 C - SENP3 Frame_Shift_Del p.R190Gfs*11 0.41 TCGA-HF-A5NB-01 17 7611470 7611470 G A EFNB3 Missense_Mutation p.R106H 0.47 deleterious(0) probably_damaging(0.945) TCGA-HF-A5NB-01 17 76395596 76395596 G A PGS1 Missense_Mutation p.D227N 0.54 deleterious(0.01) probably_damaging(0.997) TCGA-HF-A5NB-01 17 76495227 76495227 G T DNAH17-AS1 5'UTR 0.26 TCGA-HF-A5NB-01 17 76528672 76528675 CATA - DNAH17 Frame_Shift_Del p.F1001Lfs*5 0.40 TCGA-HF-A5NB-01 17 76799533 76799533 C T USP36 Missense_Mutation p.R915Q 0.42 tolerated(0.1) possibly_damaging(0.745) TCGA-HF-A5NB-01 17 76803320 76803320 G A USP36 Silent p.S602S 0.18 TCGA-HF-A5NB-01 17 77044156 77044156 G A C1QTNF1 Missense_Mutation p.A278T 0.43 tolerated(0.06) benign(0.006) TCGA-HF-A5NB-01 17 7798765 7798765 C - CHD3 Frame_Shift_Del p.R599Vfs*16 0.34 TCGA-HF-A5NB-01 17 78073395 78073395 G A CCDC40 Missense_Mutation p.V1084M 0.46 deleterious(0.02) possibly_damaging(0.683) TCGA-HF-A5NB-01 17 7812031 7812031 T C CHD3 Missense_Mutation p.W1819R 0.24 possibly_damaging(0.86) TCGA-HF-A5NB-01 17 78221999 78221999 C T SLC26A11 Silent p.A455A 0.53 TCGA-HF-A5NB-01 17 79027507 79027507 A G BAIAP2 Missense_Mutation p.I32V 0.04 tolerated(0.74) benign(0.126) TCGA-HF-A5NB-01 17 7912875 7912875 C T GUCY2D Missense_Mutation p.R574C 0.21 deleterious(0.02) possibly_damaging(0.906) TCGA-HF-A5NB-01 17 79910765 79910765 G - NOTUM 3'UTR 0.42 TCGA-HF-A5NB-01 17 80521412 80521412 C T FOXK2 Missense_Mutation p.T201M 0.45 deleterious(0) probably_damaging(0.993) TCGA-HF-A5NB-01 17 80615795 80615795 G A RAB40B Missense_Mutation p.R261C 0.41 tolerated_low_confidence(0.06) benign(0) TCGA-HF-A5NB-01 17 80684737 80684737 T A FN3KRP Missense_Mutation p.L207Q 0.47 deleterious(0.05) possibly_damaging(0.908) TCGA-HF-A5NB-01 17 9631973 9631973 G T USP43 Missense_Mutation p.R1013M 0.10 deleterious(0.02) benign(0.114) TCGA-HF-A5NB-01 18 10485528 10485528 C - APCDD1 Frame_Shift_Del p.P283Qfs*5 0.29 TCGA-HF-A5NB-01 18 12817361 12817361 C T PTPN2 Missense_Mutation p.G167S 0.55 tolerated(0.06) probably_damaging(0.919) TCGA-HF-A5NB-01 18 13742649 13742649 T C RNMT Silent p.N379N 0.28 TCGA-HF-A5NB-01 18 19239234 19239234 C T ABHD3 Missense_Mutation p.V247I 0.23 tolerated(0.17) benign(0.015) TCGA-HF-A5NB-01 18 22804478 22804478 C - ZNF521 Frame_Shift_Del p.G1135Dfs*2 0.34 TCGA-HF-A5NB-01 18 246429 246429 A - THOC1 Frame_Shift_Del p.F271Lfs*6 0.37 TCGA-HF-A5NB-01 18 29264323 29264325 AGA - B4GALT6 In_Frame_Del p.F22del 0.28 TCGA-HF-A5NB-01 18 29339724 29339724 T - SLC25A52 3'UTR 0.38 TCGA-HF-A5NB-01 18 29793260 29793260 G A MEP1B Silent p.Q439Q 0.36 TCGA-HF-A5NB-01 18 319917 319917 T - COLEC12 3'UTR 0.40 TCGA-HF-A5NB-01 18 32712092 32712092 G A MAPRE2 Missense_Mutation p.G283R 0.43 tolerated(0.07) possibly_damaging(0.881) TCGA-HF-A5NB-01 18 33613786 33613786 T C RPRD1A Missense_Mutation p.K56E 0.47 deleterious(0) probably_damaging(0.964) TCGA-HF-A5NB-01 18 34465545 34465545 G A KIAA1328 Missense_Mutation p.E120K 0.28 tolerated(0.05) possibly_damaging(0.831) TCGA-HF-A5NB-01 18 43217125 43217125 G T SLC14A2 Missense_Mutation p.W274L 0.45 deleterious(0.04) benign(0.127) TCGA-HF-A5NB-01 18 43253713 43253713 G A SLC14A2 Missense_Mutation p.A815T 0.39 deleterious(0) possibly_damaging(0.903) TCGA-HF-A5NB-01 18 44395294 44395294 A G PIAS2 Missense_Mutation p.L556P 0.47 deleterious(0) possibly_damaging(0.766) TCGA-HF-A5NB-01 18 47500841 47500841 G A MYO5B Missense_Mutation p.R401C 0.51 deleterious(0) probably_damaging(0.992) TCGA-HF-A5NB-01 18 48255714 48255714 C T MAPK4 Silent p.R418R 0.53 TCGA-HF-A5NB-01 18 50278527 50278527 C T DCC Silent p.S65S 0.44 TCGA-HF-A5NB-01 18 50589714 50589714 C T DCC Missense_Mutation p.A342V 0.43 deleterious(0.04) probably_damaging(0.97) TCGA-HF-A5NB-01 18 5291231 5291231 T - ZBTB14 Frame_Shift_Del p.I326Sfs*23 0.33 TCGA-HF-A5NB-01 18 54358513 54358513 G - WDR7 Frame_Shift_Del p.D264Tfs*44 0.36 TCGA-HF-A5NB-01 18 54362382 54362382 A C WDR7 Missense_Mutation p.Q437P 0.49 deleterious(0) probably_damaging(0.993) TCGA-HF-A5NB-01 18 5478303 5478304 - T EPB41L3 Frame_Shift_Ins p.P107Afs*2 0.26 TCGA-HF-A5NB-01 18 56585706 56585706 G A ZNF532 Missense_Mutation p.V63I 0.52 deleterious(0.01) possibly_damaging(0.67) TCGA-HF-A5NB-01 18 56646309 56646309 G A ZNF532 Missense_Mutation p.R1058H 0.41 deleterious(0) probably_damaging(0.99) TCGA-HF-A5NB-01 18 5890475 5890475 G T TMEM200C Missense_Mutation p.P530T 0.30 tolerated(0.05) benign(0.007) TCGA-HF-A5NB-01 18 60639922 60639922 A G PHLPP1 Missense_Mutation p.T1246A 0.46 tolerated(0.07) probably_damaging(0.999) TCGA-HF-A5NB-01 18 66504346 66504346 G A CCDC102B Missense_Mutation p.A116T 0.35 deleterious(0) probably_damaging(1) TCGA-HF-A5NB-01 18 6887207 6887207 C T ARHGAP28 Missense_Mutation p.A343V 0.41 tolerated(0.07) benign(0.008) TCGA-HF-A5NB-01 18 71920854 71920854 C T CYB5A Missense_Mutation p.A124T 0.27 tolerated(0.24) benign(0.015) TCGA-HF-A5NB-01 18 72353007 72353007 T C ZNF407 Silent p.A1577A 0.09 TCGA-HF-A5NB-01 18 74153437 74153437 C T ZNF516 Missense_Mutation p.R525H 0.26 deleterious(0) probably_damaging(0.95) TCGA-HF-A5NB-01 18 76754468 76754468 C T SALL3 Missense_Mutation p.A826V 0.26 deleterious(0.04) benign(0.069) TCGA-HF-A5NB-01 18 77170976 77170976 C T NFATC1 Missense_Mutation p.P221L 0.28 deleterious(0) probably_damaging(1) TCGA-HF-A5NB-01 18 8085807 8085807 C T PTPRM Nonsense_Mutation p.R564* 0.39 TCGA-HF-A5NB-01 18 8113486 8113486 T C PTPRM Missense_Mutation p.V620A 0.48 tolerated(0.67) benign(0.005) TCGA-HF-A5NB-01 18 9221911 9221911 G A ANKRD12 Missense_Mutation p.R286H 0.55 deleterious(0) probably_damaging(0.999) TCGA-HF-A5NB-01 18 9257029 9257031 CTC - ANKRD12 In_Frame_Del p.P1256del 0.39 TCGA-HF-A5NB-01 18 9887201 9887201 C - TXNDC2 Frame_Shift_Del p.P243Qfs*32 0.17 TCGA-HF-A5NB-01 19 10203487 10203487 A G C19orf66 3'UTR 0.42 TCGA-HF-A5NB-01 19 10267114 10267116 AAG - DNMT1 In_Frame_Del p.F451del 0.40 TCGA-HF-A5NB-01 19 10445443 10445443 A C ICAM3 Missense_Mutation p.I318S 0.40 tolerated(0.42) benign(0.02) TCGA-HF-A5NB-01 19 10446011 10446011 G - ICAM3 Frame_Shift_Del p.P223Rfs*21 0.32 TCGA-HF-A5NB-01 19 10465240 10465240 T C TYK2 Missense_Mutation p.D888G 0.40 tolerated(0.06) benign(0.231) TCGA-HF-A5NB-01 19 10671122 10671122 C T KRI1 Silent p.T228T 0.19 TCGA-HF-A5NB-01 19 11031126 11031126 T G CARM1 Missense_Mutation p.L404R 0.14 deleterious(0) probably_damaging(1) TCGA-HF-A5NB-01 19 11527598 11527598 C T RGL3 Missense_Mutation p.A95T 0.35 tolerated(0.17) benign(0.403) TCGA-HF-A5NB-01 19 11618821 11618821 G - ECSIT Frame_Shift_Del p.Q261Sfs*5 0.32 TCGA-HF-A5NB-01 19 12126794 12126794 G T ZNF433 Silent p.S296S 0.29 TCGA-HF-A5NB-01 19 12127137 12127137 T C ZNF433 Missense_Mutation p.H182R 0.27 tolerated(0.35) benign(0.015) TCGA-HF-A5NB-01 19 12461741 12461741 A - ZNF442 Frame_Shift_Del p.W220Gfs*34 0.31 TCGA-HF-A5NB-01 19 12997910 12997910 G A KLF1 Silent p.T15T 0.52 TCGA-HF-A5NB-01 19 13255636 13255636 T C STX10 Missense_Mutation p.I174V 0.52 tolerated(0.52) benign(0.103) TCGA-HF-A5NB-01 19 13409813 13409813 G A CACNA1A Silent p.D878D 0.73 TCGA-HF-A5NB-01 19 14001117 14001117 G A C19orf57 Silent p.P184P 0.42 TCGA-HF-A5NB-01 19 1434847 1434847 G A DAZAP1 Missense_Mutation p.G387D 0.14 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-HF-A5NB-01 19 14501813 14501813 G A CD97 Missense_Mutation p.D90N 0.41 tolerated(0.19) benign(0.123) TCGA-HF-A5NB-01 19 14517724 14517726 AGA - CD97 In_Frame_Del p.K721del 0.47 TCGA-HF-A5NB-01 19 15355131 15355131 G A BRD4 Missense_Mutation p.P831L 0.42 benign(0.102) TCGA-HF-A5NB-01 19 1556823 1556823 T C MEX3D Missense_Mutation p.D232G 0.46 deleterious(0.01) possibly_damaging(0.757) TCGA-HF-A5NB-01 19 15569223 15569224 - C RASAL3 Frame_Shift_Ins p.G269Wfs*12 0.30 TCGA-HF-A5NB-01 19 15580585 15580585 C T PGLYRP2 Missense_Mutation p.R500H 0.47 deleterious(0) possibly_damaging(0.523) TCGA-HF-A5NB-01 19 15807025 15807025 C A CYP4F12 Missense_Mutation p.P435Q 0.13 deleterious(0.04) possibly_damaging(0.855) TCGA-HF-A5NB-01 19 16236325 16236325 A G RAB8A Missense_Mutation p.N98D 0.45 deleterious(0.01) probably_damaging(0.993) TCGA-HF-A5NB-01 19 17346400 17346400 C T NR2F6 Missense_Mutation p.R283H 0.60 deleterious(0.03) probably_damaging(0.987) TCGA-HF-A5NB-01 19 17899236 17899236 A G FCHO1 3'UTR 0.38 TCGA-HF-A5NB-01 19 1918248 1918248 G A SCAMP4 Missense_Mutation p.V87M 0.41 deleterious(0.02) probably_damaging(0.952) TCGA-HF-A5NB-01 19 19243981 19243981 C T TMEM161A Missense_Mutation p.R49Q 0.43 tolerated(0.11) possibly_damaging(0.616) TCGA-HF-A5NB-01 19 20002738 20002738 T C ZNF253 Missense_Mutation p.Y228H 0.46 deleterious(0.02) probably_damaging(0.998) TCGA-HF-A5NB-01 19 20727782 20727782 G T ZNF737 Silent p.S409S 0.32 TCGA-HF-A5NB-01 19 21713460 21713460 G A ZNF429 Missense_Mutation p.R67Q 0.39 tolerated(0.07) probably_damaging(0.946) TCGA-HF-A5NB-01 19 2217002 2217002 G A DOT1L Silent p.V819V 0.07 TCGA-HF-A5NB-01 19 22847987 22847987 A T ZNF492 Nonsense_Mutation p.K506* 0.42 TCGA-HF-A5NB-01 19 2933563 2933563 T C ZNF77 Missense_Mutation p.E521G 0.10 deleterious(0) probably_damaging(0.947) TCGA-HF-A5NB-01 19 30936136 30936136 G A ZNF536 Missense_Mutation p.G556E 0.45 deleterious(0.01) probably_damaging(1) TCGA-HF-A5NB-01 19 3148614 3148614 C T GNA15 Silent p.T57T 0.45 TCGA-HF-A5NB-01 19 33696462 33696462 C T LRP3 Silent p.Y262Y 0.29 TCGA-HF-A5NB-01 19 33870224 33870224 G A CEBPG Missense_Mutation p.G27S 0.47 tolerated(0.23) benign(0.278) TCGA-HF-A5NB-01 19 34180111 34180111 C T CHST8 5'UTR 0.52 TCGA-HF-A5NB-01 19 35614052 35614052 T C FXYD3 Intron 0.56 TCGA-HF-A5NB-01 19 3611820 3611820 C T CACTIN 3'UTR 0.75 TCGA-HF-A5NB-01 19 36207708 36207708 C T ZBTB32 3'UTR 0.37 TCGA-HF-A5NB-01 19 36210941 36210941 G A KMT2B Missense_Mutation p.C231Y 0.36 unknown(0) TCGA-HF-A5NB-01 19 36213346 36213346 C T KMT2B Missense_Mutation p.S848L 0.38 benign(0.002) TCGA-HF-A5NB-01 19 36216184 36216184 G - KMT2B Frame_Shift_Del p.G1199Afs*156 0.26 TCGA-HF-A5NB-01 19 36221323 36221323 C A KMT2B Missense_Mutation p.F1719L 0.44 possibly_damaging(0.827) TCGA-HF-A5NB-01 19 36363501 36363501 C T APLP1 Missense_Mutation p.R323C 0.41 tolerated(0.1) probably_damaging(0.998) TCGA-HF-A5NB-01 19 3746581 3746581 G A TJP3 Silent p.R712R 0.45 TCGA-HF-A5NB-01 19 38028414 38028415 - T ZNF793 Frame_Shift_Ins p.C288Lfs*28 0.44 TCGA-HF-A5NB-01 19 38795994 38795994 A G YIF1B Nonstop_Mutation p.*315Rext*76 0.38 TCGA-HF-A5NB-01 19 38874032 38874032 C - PSMD8 3'UTR 0.25 TCGA-HF-A5NB-01 19 38998423 38998423 T A RYR1 Missense_Mutation p.L2963Q 0.07 benign(0.044) TCGA-HF-A5NB-01 19 39200067 39200067 C T ACTN4 Silent p.F228F 0.45 TCGA-HF-A5NB-01 19 39214631 39214631 C T ACTN4 Missense_Mutation p.R536C 0.46 deleterious(0) possibly_damaging(0.85) TCGA-HF-A5NB-01 19 39440761 39440761 G A FBXO17 Missense_Mutation p.R67C 0.33 tolerated(0.12) benign(0.001) TCGA-HF-A5NB-01 19 39575785 39575785 C - PAPL 5'UTR 0.43 TCGA-HF-A5NB-01 19 4028168 4028168 C T PIAS4 Silent p.A188A 0.46 TCGA-HF-A5NB-01 19 40480308 40480308 C - PSMC4 Frame_Shift_Del p.E146Kfs*7 0.21 TCGA-HF-A5NB-01 19 40886748 40886748 C T HIPK4 Missense_Mutation p.V384M 0.44 tolerated(0.12) benign(0.004) TCGA-HF-A5NB-01 19 41008362 41008362 A G SPTBN4 Missense_Mutation p.N384S 0.29 deleterious(0) benign(0.342) TCGA-HF-A5NB-01 19 41198068 41198068 G A ADCK4 Nonsense_Mutation p.R503* 0.21 TCGA-HF-A5NB-01 19 41271081 41271081 C - SNRPA 3'UTR 0.44 TCGA-HF-A5NB-01 19 41628732 41628732 G T CYP2F1 Missense_Mutation p.K276N 0.08 tolerated(0.07) benign(0.03) TCGA-HF-A5NB-01 19 4182544 4182544 T G SIRT6 5'UTR 0.23 TCGA-HF-A5NB-01 19 41888948 41888948 A G TMEM91 Intron 0.44 TCGA-HF-A5NB-01 19 42222226 42222226 G A CEACAM5 Missense_Mutation p.G473R 0.49 deleterious(0.02) probably_damaging(0.951) TCGA-HF-A5NB-01 19 422414 422414 G A SHC2 Missense_Mutation p.A451V 0.33 tolerated(0.15) benign(0.011) TCGA-HF-A5NB-01 19 42753340 42753340 C A ERF Missense_Mutation p.E308D 0.28 tolerated(0.12) benign(0.338) TCGA-HF-A5NB-01 19 42754650 42754650 C T ERF Nonsense_Mutation p.W30* 0.18 TCGA-HF-A5NB-01 19 42814085 42814085 G A PRR19 Missense_Mutation p.A117T 0.06 tolerated(0.19) benign(0.003) TCGA-HF-A5NB-01 19 4292734 4292734 C T TMIGD2 Silent p.A237A 0.26 TCGA-HF-A5NB-01 19 43348686 43348686 C T PSG10P RNA 0.46 TCGA-HF-A5NB-01 19 43414762 43414762 G A PSG6 Missense_Mutation p.R226C 0.41 deleterious(0.03) benign(0.223) TCGA-HF-A5NB-01 19 43866411 43866411 G - CD177 3'UTR 0.27 TCGA-HF-A5NB-01 19 44050754 44050754 T C XRCC1 Silent p.V473V 0.45 TCGA-HF-A5NB-01 19 44153261 44153261 A G PLAUR Silent p.C263C 0.41 TCGA-HF-A5NB-01 19 44222893 44222893 C T IRGC Silent p.G61G 0.47 TCGA-HF-A5NB-01 19 44602034 44602034 C T ZNF224 Missense_Mutation p.T3M 0.24 tolerated(0.27) benign(0.055) TCGA-HF-A5NB-01 19 44635661 44635661 T C ZNF225 Silent p.R298R 0.05 TCGA-HF-A5NB-01 19 44778791 44778791 A C ZNF233 Missense_Mutation p.S660R 0.44 tolerated(0.58) benign(0.002) TCGA-HF-A5NB-01 19 45593576 45593576 C T GEMIN7 Silent p.R68R 0.48 TCGA-HF-A5NB-01 19 45889419 45889419 C T PPP1R13L Missense_Mutation p.R612Q 0.59 deleterious(0) benign(0.238) TCGA-HF-A5NB-01 19 46094199 46094199 G A GPR4 Missense_Mutation p.A309V 0.45 tolerated(0.28) benign(0.122) TCGA-HF-A5NB-01 19 46283130 46283130 G - DMPK Frame_Shift_Del p.P63Qfs*7 0.40 TCGA-HF-A5NB-01 19 47112447 47112448 - TC CALM3 3'UTR 0.52 TCGA-HF-A5NB-01 19 47935657 47935657 G A SLC8A2 Missense_Mutation p.P719L 0.45 deleterious(0) probably_damaging(1) TCGA-HF-A5NB-01 19 48789818 48789818 T - ZNF114 Frame_Shift_Del p.Y315Ifs*6 0.31 TCGA-HF-A5NB-01 19 48956120 48956120 C T GRWD1 Silent p.D393D 0.53 TCGA-HF-A5NB-01 19 48965355 48965355 C T KCNJ14 Missense_Mutation p.A125V 0.41 tolerated(0.19) benign(0.34) TCGA-HF-A5NB-01 19 49001485 49001485 C A LMTK3 Silent p.G976G 0.12 TCGA-HF-A5NB-01 19 49447628 49447628 C T DHDH Silent p.C253C 0.39 TCGA-HF-A5NB-01 19 49481185 49481185 G A GYS1 Missense_Mutation p.T435M 0.32 tolerated(0.12) probably_damaging(0.999) TCGA-HF-A5NB-01 19 49842169 49842169 T C CD37 Silent p.P220P 0.43 TCGA-HF-A5NB-01 19 49844575 49844575 C - TEAD2 3'UTR 0.45 TCGA-HF-A5NB-01 19 49867863 49867863 G A DKKL1 Missense_Mutation p.R12Q 0.39 tolerated_low_confidence(0.36) benign(0) TCGA-HF-A5NB-01 19 50060369 50060369 C A NOSIP Missense_Mutation p.K132N 0.35 tolerated(0.22) benign(0.037) TCGA-HF-A5NB-01 19 50102610 50102610 C A PRR12 Missense_Mutation p.L1254M 0.35 possibly_damaging(0.82) TCGA-HF-A5NB-01 19 50156850 50156850 G - SCAF1 Frame_Shift_Del p.A1070Rfs*37 0.56 TCGA-HF-A5NB-01 19 50397558 50397558 C T IL4I1 Silent p.S200S 0.27 TCGA-HF-A5NB-01 19 51013683 51013683 G T JOSD2 Silent p.S2S 0.04 TCGA-HF-A5NB-01 19 51135639 51135639 C A SYT3 Missense_Mutation p.G193V 0.28 tolerated(0.06) benign(0.007) TCGA-HF-A5NB-01 19 52272632 52272632 C T FPR2 Missense_Mutation p.R241W 0.38 tolerated(0.11) benign(0.344) TCGA-HF-A5NB-01 19 52443490 52443490 T C ZNF613 Missense_Mutation p.V15A 0.45 deleterious(0) probably_damaging(0.963) TCGA-HF-A5NB-01 19 52496496 52496497 GA - ZNF615 Frame_Shift_Del p.L622Qfs*17 0.34 TCGA-HF-A5NB-01 19 53304402 53304402 T - ZNF28 Frame_Shift_Del p.K232Nfs*4 0.34 TCGA-HF-A5NB-01 19 53912919 53912919 G A ZNF765 3'UTR 0.45 TCGA-HF-A5NB-01 19 54649439 54649439 G A CNOT3 Missense_Mutation p.V197I 0.38 tolerated(0.09) benign(0.398) TCGA-HF-A5NB-01 19 54720953 54720953 C - LILRB3 3'UTR 0.33 TCGA-HF-A5NB-01 19 54822818 54822818 C A LILRA5 Missense_Mutation p.G193V 0.38 deleterious(0) probably_damaging(0.943) TCGA-HF-A5NB-01 19 55144064 55144064 G A LILRB1 Missense_Mutation p.A271T 0.42 tolerated(0.13) benign(0) TCGA-HF-A5NB-01 19 55177884 55177884 T C LILRB4 Missense_Mutation p.F329L 0.53 tolerated(1) benign(0) TCGA-HF-A5NB-01 19 55496451 55496451 G A NLRP2 Silent p.T689T 0.46 TCGA-HF-A5NB-01 19 55525819 55525819 G T GP6 Nonsense_Mutation p.C498* 0.05 TCGA-HF-A5NB-01 19 55670360 55670360 T A DNAAF3 3'UTR 0.41 TCGA-HF-A5NB-01 19 55670363 55670363 T G DNAAF3 3'UTR 0.36 TCGA-HF-A5NB-01 19 55670365 55670365 T A DNAAF3 3'UTR 0.36 TCGA-HF-A5NB-01 19 55715270 55715270 T G PTPRH Missense_Mutation p.N256H 0.43 unknown(0) TCGA-HF-A5NB-01 19 55812940 55812940 G A BRSK1 Missense_Mutation p.V247I 0.38 tolerated(0.08) benign(0.312) TCGA-HF-A5NB-01 19 55858437 55858437 C T SUV420H2 Missense_Mutation p.R337C 0.35 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-HF-A5NB-01 19 56109091 56109091 C T FIZ1 Silent p.A47A 0.21 TCGA-HF-A5NB-01 19 56114094 56114094 C T ZNF524 Missense_Mutation p.R206C 0.38 deleterious(0) probably_damaging(0.995) TCGA-HF-A5NB-01 19 56896325 56896325 T C ZNF582 Missense_Mutation p.Q154R 0.38 tolerated(0.2) benign(0.039) TCGA-HF-A5NB-01 19 56952821 56952821 C T ZNF667 Missense_Mutation p.A515T 0.39 tolerated(0.34) probably_damaging(0.999) TCGA-HF-A5NB-01 19 57133016 57133016 C A ZNF71 Missense_Mutation p.P121T 0.41 deleterious(0.03) benign(0) TCGA-HF-A5NB-01 19 57646264 57646264 T - ZIM3 3'UTR 0.35 TCGA-HF-A5NB-01 19 5783674 5783674 G - PRR22 Frame_Shift_Del p.P195Lfs*96 0.67 TCGA-HF-A5NB-01 19 58049385 58049385 G T ZNF549 Missense_Mutation p.G338V 0.41 deleterious(0) probably_damaging(0.999) TCGA-HF-A5NB-01 19 5832132 5832132 G A FUT6 Silent p.D149D 0.45 TCGA-HF-A5NB-01 19 58571460 58571460 C T ZNF135 Intron 0.55 TCGA-HF-A5NB-01 19 58619337 58619337 G A ZSCAN18 Intron 0.33 TCGA-HF-A5NB-01 19 58849985 58849985 G T ZSCAN22 Nonsense_Mutation p.E257* 0.04 TCGA-HF-A5NB-01 19 58850426 58850426 G A ZSCAN22 Missense_Mutation p.G404R 0.38 deleterious(0) probably_damaging(0.989) TCGA-HF-A5NB-01 19 58928693 58928693 T C ZNF584 Missense_Mutation p.Y270H 0.52 tolerated(0.12) possibly_damaging(0.637) TCGA-HF-A5NB-01 19 59074386 59074386 C A MZF1 Missense_Mutation p.G420C 0.50 deleterious(0.02) probably_damaging(0.967) TCGA-HF-A5NB-01 19 621361 621361 C T POLRMT Silent p.A779A 0.23 TCGA-HF-A5NB-01 19 6476951 6476951 C T DENND1C Missense_Mutation p.V199M 0.50 deleterious(0.01) probably_damaging(0.954) TCGA-HF-A5NB-01 19 6684817 6684817 G A C3 Missense_Mutation p.T1333I 0.41 tolerated(0.22) benign(0.008) TCGA-HF-A5NB-01 19 6710828 6710828 G A C3 Missense_Mutation p.A503V 0.71 tolerated(1) benign(0.013) TCGA-HF-A5NB-01 19 6744926 6744926 C - TRIP10 Frame_Shift_Del p.S304Rfs*28 0.33 TCGA-HF-A5NB-01 19 757482 757482 C T MISP Missense_Mutation p.T179M 0.31 tolerated(0.14) benign(0.013) TCGA-HF-A5NB-01 19 7584975 7584975 C T ZNF358 Missense_Mutation p.R283C 0.36 deleterious(0) probably_damaging(1) TCGA-HF-A5NB-01 19 7676727 7676727 C - CAMSAP3 Frame_Shift_Del p.P478Rfs*112 0.32 TCGA-HF-A5NB-01 19 8809072 8809072 G - ACTL9 5'UTR 0.35 TCGA-HF-A5NB-01 19 9090545 9090545 T C MUC16 Missense_Mutation p.T424A 0.39 unknown(0) TCGA-HF-A5NB-01 19 9297434 9297434 C T OR7D2 3'UTR 0.50 TCGA-HF-A5NB-01 1 100380997 100380997 A - AGL Frame_Shift_Del p.K1407Nfs*8 0.42 TCGA-HF-A5NB-01 1 10431223 10431223 C T KIF1B Missense_Mutation p.R1571W 0.61 deleterious(0.02) probably_damaging(0.995) TCGA-HF-A5NB-01 1 109793054 109793054 G A CELSR2 Missense_Mutation p.G118D 0.50 deleterious_low_confidence(0.03) benign(0.004) TCGA-HF-A5NB-01 1 109801412 109801412 C T CELSR2 Silent p.R1223R 0.28 TCGA-HF-A5NB-01 1 109823609 109823609 G A PSRC1 Missense_Mutation p.R232C 0.38 tolerated_low_confidence(0.11) benign(0.034) TCGA-HF-A5NB-01 1 110091254 110091254 C A GNAI3 5'UTR 0.64 TCGA-HF-A5NB-01 1 110737250 110737250 C T SLC6A17 Missense_Mutation p.T450M 0.29 deleterious(0.01) probably_damaging(1) TCGA-HF-A5NB-01 1 113058862 113058862 T C WNT2B Silent p.C168C 0.05 TCGA-HF-A5NB-01 1 113464649 113464649 G A SLC16A1 Silent p.T108T 0.51 TCGA-HF-A5NB-01 1 114414304 114414304 G A PTPN22 5'UTR 0.46 TCGA-HF-A5NB-01 1 115124232 115124232 C T BCAS2 5'UTR 0.50 TCGA-HF-A5NB-01 1 11718860 11718860 G A FBXO44 Missense_Mutation p.A186T 0.67 tolerated(0.57) benign(0.001) TCGA-HF-A5NB-01 1 11733886 11733886 G A FBXO6 Missense_Mutation p.R287Q 0.72 tolerated_low_confidence(0.36) benign(0) TCGA-HF-A5NB-01 1 11807557 11807557 C T AGTRAP Silent p.G41G 0.26 TCGA-HF-A5NB-01 1 118461272 118461272 C T GDAP2 Missense_Mutation p.S88N 0.46 tolerated(0.1) possibly_damaging(0.843) TCGA-HF-A5NB-01 1 1192459 1192459 C T UBE2J2 Nonsense_Mutation p.W125* 0.27 TCGA-HF-A5NB-01 1 119927642 119927642 A C HAO2 Missense_Mutation p.N176T 0.47 deleterious(0.04) benign(0.001) TCGA-HF-A5NB-01 1 120438116 120438116 T - ADAM30 Frame_Shift_Del p.S282Vfs*3 0.27 TCGA-HF-A5NB-01 1 120464920 120464920 G A NOTCH2 Missense_Mutation p.R1718C 0.55 deleterious(0.01) possibly_damaging(0.719) TCGA-HF-A5NB-01 1 120539773 120539773 T C NOTCH2 Missense_Mutation p.N200D 0.37 tolerated(0.06) benign(0.007) TCGA-HF-A5NB-01 1 120906209 120906209 C T RP11-439A17.4 5'Flank 0.43 TCGA-HF-A5NB-01 1 12423236 12423236 G A VPS13D Missense_Mutation p.V3461I 0.61 benign(0.001) TCGA-HF-A5NB-01 1 1248304 1248304 T C CPSF3L Missense_Mutation p.Y392C 0.31 tolerated(0.06) probably_damaging(0.992) TCGA-HF-A5NB-01 1 12887441 12887441 T C PRAMEF11 Missense_Mutation p.H139R 0.29 tolerated(0.08) probably_damaging(0.998) TCGA-HF-A5NB-01 1 143912436 143912436 T - FAM72D 5'UTR 0.34 TCGA-HF-A5NB-01 1 145498816 145498816 T - LIX1L 3'UTR 0.13 TCGA-HF-A5NB-01 1 145533521 145533522 - G ITGA10 Frame_Shift_Ins p.A470Gfs*20 0.27 TCGA-HF-A5NB-01 1 147380681 147380681 C T GJA8 Missense_Mutation p.T200M 0.32 deleterious(0) probably_damaging(1) TCGA-HF-A5NB-01 1 149879291 149879291 G A SV2A Missense_Mutation p.R547C 0.54 deleterious(0) possibly_damaging(0.901) TCGA-HF-A5NB-01 1 150921647 150921647 C T SETDB1 Silent p.T439T 0.65 TCGA-HF-A5NB-01 1 150974245 150974245 G - FAM63A Frame_Shift_Del p.P204Rfs*5 0.35 TCGA-HF-A5NB-01 1 151491143 151491143 A G CGN Missense_Mutation p.T50A 0.59 deleterious(0.02) benign(0.132) TCGA-HF-A5NB-01 1 152081493 152081493 G A TCHH Silent p.R1400R 0.61 TCGA-HF-A5NB-01 1 152283660 152283660 C T FLG Silent p.G1234G 0.28 TCGA-HF-A5NB-01 1 153604264 153604264 C A S100A1 Missense_Mutation p.L78I 0.27 deleterious(0.02) benign(0.046) TCGA-HF-A5NB-01 1 153733339 153733339 G A INTS3 Missense_Mutation p.V452M 0.59 deleterious(0) probably_damaging(0.983) TCGA-HF-A5NB-01 1 154705610 154705610 G T KCNN3 Missense_Mutation p.Q487K 0.30 tolerated(0.85) benign(0.01) TCGA-HF-A5NB-01 1 155005960 155005960 G T DCST2 Missense_Mutation p.S73Y 0.57 deleterious(0) probably_damaging(0.934) TCGA-HF-A5NB-01 1 155175989 155175989 A G THBS3 Splice_Site p.X96_splice 0.14 TCGA-HF-A5NB-01 1 155178728 155178728 G T MTX1 Nonsense_Mutation p.E45* 0.20 TCGA-HF-A5NB-01 1 155218244 155218244 T C FAM189B Missense_Mutation p.T511A 0.27 tolerated(0.06) probably_damaging(0.977) TCGA-HF-A5NB-01 1 155736366 155736366 T C GON4L Silent p.E966E 0.37 TCGA-HF-A5NB-01 1 156508826 156508826 C T IQGAP3 Splice_Site p.X1019_splice 0.80 TCGA-HF-A5NB-01 1 156563550 156563550 C T APOA1BP Intron 0.44 TCGA-HF-A5NB-01 1 156642739 156642740 AG - NES Frame_Shift_Del p.L414Afs*17 0.24 TCGA-HF-A5NB-01 1 156815041 156815041 C - INSRR Frame_Shift_Del p.G755Afs*20 0.31 TCGA-HF-A5NB-01 1 1572045 1572045 T C CDK11B Missense_Mutation p.K642R 0.26 unknown(0) TCGA-HF-A5NB-01 1 157805927 157805927 C T CD5L Missense_Mutation p.R25Q 0.28 deleterious(0.05) benign(0.415) TCGA-HF-A5NB-01 1 158670089 158670089 G T OR6K2 Silent p.A118A 0.15 TCGA-HF-A5NB-01 1 159283953 159283953 C T OR10J3 Missense_Mutation p.G166D 0.55 tolerated(0.23) benign(0.02) TCGA-HF-A5NB-01 1 159860392 159860392 G A CCDC19 Silent p.S50S 0.23 TCGA-HF-A5NB-01 1 160121894 160121894 A - ATP1A4 Frame_Shift_Del p.I26Sfs*6 0.40 TCGA-HF-A5NB-01 1 160389207 160389207 G A VANGL2 Missense_Mutation p.R203H 0.33 deleterious(0) probably_damaging(0.966) TCGA-HF-A5NB-01 1 160589609 160589609 T C SLAMF1 Missense_Mutation p.E274G 0.04 tolerated(0.05) benign(0.14) TCGA-HF-A5NB-01 1 16069621 16069621 C T TMEM82 Missense_Mutation p.R90W 0.64 deleterious(0.02) probably_damaging(0.998) TCGA-HF-A5NB-01 1 161021191 161021191 G A ARHGAP30 Missense_Mutation p.R445C 0.39 deleterious(0) probably_damaging(0.998) TCGA-HF-A5NB-01 1 161599691 161599691 G T FCGR3B Missense_Mutation p.L102I 0.07 tolerated(0.42) possibly_damaging(0.609) TCGA-HF-A5NB-01 1 161695856 161695856 A G FCRLB Missense_Mutation p.K185E 0.05 tolerated(0.33) possibly_damaging(0.644) TCGA-HF-A5NB-01 1 161697065 161697065 C T FCRLB Silent p.T298T 0.51 TCGA-HF-A5NB-01 1 16263927 16263927 C A SPEN Silent p.P3432P 0.18 TCGA-HF-A5NB-01 1 165632351 165632351 A G ALDH9A1 Missense_Mutation p.I498T 0.33 deleterious(0) possibly_damaging(0.772) TCGA-HF-A5NB-01 1 166039689 166039689 C A FAM78B Missense_Mutation p.R192M 0.56 deleterious(0) probably_damaging(0.997) TCGA-HF-A5NB-01 1 16748417 16748417 T - SPATA21 Frame_Shift_Del p.A29Qfs*22 0.43 TCGA-HF-A5NB-01 1 172356280 172356280 A G DNM3 Missense_Mutation p.D689G 0.18 deleterious(0.01) benign(0.026) TCGA-HF-A5NB-01 1 172410734 172410734 T - PIGC 3'UTR 0.30 TCGA-HF-A5NB-01 1 172634899 172634899 T C FASLG Missense_Mutation p.F197L 0.65 tolerated(0.07) probably_damaging(0.922) TCGA-HF-A5NB-01 1 17265405 17265405 C T CROCC Missense_Mutation p.A459V 0.17 probably_damaging(0.977) TCGA-HF-A5NB-01 1 17331932 17331932 C G ATP13A2 Silent p.L75L 0.14 TCGA-HF-A5NB-01 1 17586121 17586121 C T PADI3 Silent p.G47G 0.57 TCGA-HF-A5NB-01 1 177226397 177226397 C T BRINP2 Silent p.G182G 0.24 TCGA-HF-A5NB-01 1 17738643 17738643 C T RCC2 Missense_Mutation p.G454D 0.27 deleterious(0) probably_damaging(0.999) TCGA-HF-A5NB-01 1 179054966 179054967 TG - TOR3A Frame_Shift_Del p.V194Qfs*42 0.46 TCGA-HF-A5NB-01 1 180165599 180165599 T C QSOX1 Silent p.N557N 0.61 TCGA-HF-A5NB-01 1 180904527 180904527 C T KIAA1614 Silent p.L494L 0.26 TCGA-HF-A5NB-01 1 180914727 180914727 C T KIAA1614 3'UTR 0.30 TCGA-HF-A5NB-01 1 183085783 183085783 A G LAMC1 Missense_Mutation p.D467G 0.62 tolerated(0.07) benign(0.075) TCGA-HF-A5NB-01 1 186055436 186055436 C A HMCN1 Missense_Mutation p.F2981L 0.34 probably_damaging(0.989) TCGA-HF-A5NB-01 1 186357572 186357572 A C C1orf27 Splice_Site p.X111_splice 0.67 TCGA-HF-A5NB-01 1 196395087 196395087 T C KCNT2 Missense_Mutation p.E339G 0.12 deleterious(0) possibly_damaging(0.889) TCGA-HF-A5NB-01 1 196887508 196887508 G A CFHR4 Missense_Mutation p.G569D 0.54 deleterious(0) probably_damaging(0.995) TCGA-HF-A5NB-01 1 197070227 197070227 T C ASPM Missense_Mutation p.I2718M 0.24 deleterious(0.01) possibly_damaging(0.872) TCGA-HF-A5NB-01 1 197070317 197070317 C T ASPM Missense_Mutation p.M2688I 0.31 tolerated(0.32) benign(0.18) TCGA-HF-A5NB-01 1 197097797 197097797 T C ASPM Splice_Site p.X921_splice 0.66 TCGA-HF-A5NB-01 1 198248095 198248095 G A NEK7 Missense_Mutation p.A165T 0.32 deleterious(0) probably_damaging(0.958) TCGA-HF-A5NB-01 1 200635698 200635698 G A DDX59 Silent p.S57S 0.31 TCGA-HF-A5NB-01 1 201022619 201022619 T C CACNA1S Missense_Mutation p.T1255A 0.59 deleterious(0) possibly_damaging(0.588) TCGA-HF-A5NB-01 1 201184899 201184899 C T IGFN1 Silent p.G3076G 0.37 TCGA-HF-A5NB-01 1 202864766 202864766 C T KLHL12 Missense_Mutation p.R340H 0.66 tolerated(0.11) possibly_damaging(0.583) TCGA-HF-A5NB-01 1 204588371 204588371 G A LRRN2 Silent p.A250A 0.64 TCGA-HF-A5NB-01 1 204971728 204971728 C T NFASC Silent p.N1047N 0.09 TCGA-HF-A5NB-01 1 207076326 207076326 C T IL24 Silent p.D182D 0.60 TCGA-HF-A5NB-01 1 208207838 208207838 C T PLXNA2 Missense_Mutation p.D1622N 0.34 deleterious(0.04) probably_damaging(0.993) TCGA-HF-A5NB-01 1 208217992 208217992 G A PLXNA2 Silent p.G1245G 0.57 TCGA-HF-A5NB-01 1 20827480 20827480 G T MUL1 Silent p.T254T 0.13 TCGA-HF-A5NB-01 1 20879716 20879716 C T FAM43B Missense_Mutation p.H84Y 0.55 tolerated(1) benign(0.131) TCGA-HF-A5NB-01 1 209849333 209849333 G A G0S2 Missense_Mutation p.A102T 0.28 deleterious(0) probably_damaging(0.998) TCGA-HF-A5NB-01 1 20991120 20991120 T G KIF17 Missense_Mutation p.K1016T 0.04 deleterious(0.03) possibly_damaging(0.701) TCGA-HF-A5NB-01 1 209969821 209969821 C T IRF6 Missense_Mutation p.R84H 0.67 deleterious(0) probably_damaging(1) TCGA-HF-A5NB-01 1 210010321 210010321 C - DIEXF Frame_Shift_Del p.L278Sfs*7 0.14 TCGA-HF-A5NB-01 1 21054044 21054044 A G SH2D5 Missense_Mutation p.L47P 0.11 tolerated(0.2) possibly_damaging(0.61) TCGA-HF-A5NB-01 1 210856897 210856897 C T KCNH1 Missense_Mutation p.S899N 0.12 deleterious_low_confidence(0.01) benign(0.04) TCGA-HF-A5NB-01 1 213403866 213403866 A G RPS6KC1 Silent p.T357T 0.62 TCGA-HF-A5NB-01 1 214170395 214170395 A T PROX1 Missense_Mutation p.I173F 0.31 deleterious(0) probably_damaging(0.999) TCGA-HF-A5NB-01 1 220089047 220089047 T A SLC30A10 Missense_Mutation p.N401I 0.30 deleterious(0) benign(0.028) TCGA-HF-A5NB-01 1 220280450 220280450 T C IARS2 Silent p.P428P 0.64 TCGA-HF-A5NB-01 1 220338127 220338127 A - RAB3GAP2 Frame_Shift_Del p.F1034Lfs*5 0.56 TCGA-HF-A5NB-01 1 22141016 22141016 G A LDLRAD2 Missense_Mutation p.A71T 0.65 deleterious(0.04) benign(0.075) TCGA-HF-A5NB-01 1 222732029 222732029 T - TAF1A Frame_Shift_Del p.K442Nfs*5 0.13 TCGA-HF-A5NB-01 1 222801059 222801059 A - MIA3 Frame_Shift_Del p.N168Tfs*15 0.26 TCGA-HF-A5NB-01 1 223164922 223164922 A - DISP1 Frame_Shift_Del p.N243Ifs*8 0.37 TCGA-HF-A5NB-01 1 223285099 223285099 C T TLR5 Silent p.A425A 0.56 TCGA-HF-A5NB-01 1 224001956 224001956 G - TP53BP2 Frame_Shift_Del p.P92Lfs*6 0.40 TCGA-HF-A5NB-01 1 224927218 224927218 T C CNIH3 3'UTR 0.77 TCGA-HF-A5NB-01 1 226127159 226127159 G A LEFTY2 Silent p.S213S 0.10 TCGA-HF-A5NB-01 1 227618299 227618299 A - CTD-2090I13.1 RNA 0.45 TCGA-HF-A5NB-01 1 228471428 228471428 G A OBSCN Missense_Mutation p.D3417N 0.10 possibly_damaging(0.754) TCGA-HF-A5NB-01 1 228506696 228506696 G A OBSCN Missense_Mutation p.R5705H 0.59 probably_damaging(0.999) TCGA-HF-A5NB-01 1 228529898 228529898 C T OBSCN Missense_Mutation p.T6995M 0.38 probably_damaging(0.923) TCGA-HF-A5NB-01 1 229460857 229460857 A - CCSAP 3'UTR 0.70 TCGA-HF-A5NB-01 1 229567541 229567541 G A ACTA1 Missense_Mutation p.T306M 0.26 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-HF-A5NB-01 1 229580694 229580694 A T NUP133 Missense_Mutation p.F1101I 0.27 deleterious(0.01) probably_damaging(0.966) TCGA-HF-A5NB-01 1 229653865 229653865 T - ABCB10 3'UTR 0.58 TCGA-HF-A5NB-01 1 230829093 230829093 A G COG2 Missense_Mutation p.E724G 0.32 deleterious(0.02) possibly_damaging(0.52) TCGA-HF-A5NB-01 1 232615460 232615460 C T SIPA1L2 Silent p.T666T 0.57 TCGA-HF-A5NB-01 1 234566030 234566030 A G TARBP1 Silent p.S804S 0.25 TCGA-HF-A5NB-01 1 235377278 235377278 T C ARID4B Silent p.E549E 0.68 TCGA-HF-A5NB-01 1 235505467 235505467 G A GGPS1 Missense_Mutation p.V95M 0.34 tolerated(0.06) benign(0.082) TCGA-HF-A5NB-01 1 235976335 235976335 C T LYST Silent p.L73L 0.68 TCGA-HF-A5NB-01 1 236558949 236558949 C A EDARADD Intron 0.29 TCGA-HF-A5NB-01 1 23689580 23689580 C T ZNF436 Missense_Mutation p.G99R 0.55 tolerated(0.37) benign(0.405) TCGA-HF-A5NB-01 1 23697983 23697983 C T C1orf213 3'UTR 0.26 TCGA-HF-A5NB-01 1 237167424 237167424 A - MT1HL1 3'UTR 0.28 TCGA-HF-A5NB-01 1 237806679 237806679 C T RYR2 Missense_Mutation p.S2425F 0.59 probably_damaging(0.999) TCGA-HF-A5NB-01 1 24120833 24120833 C - LYPLA2 Intron 0.28 TCGA-HF-A5NB-01 1 245772773 245772773 G A KIF26B Silent p.L619L 0.22 TCGA-HF-A5NB-01 1 247024358 247024358 C T AHCTF1 Silent p.P1334P 0.66 TCGA-HF-A5NB-01 1 247655271 247655271 G A OR2W5 RNA 0.66 TCGA-HF-A5NB-01 1 247768965 247768965 T C OR2G3 Silent p.V26V 0.37 TCGA-HF-A5NB-01 1 247835486 247835486 C T OR13G1 Silent p.V286V 0.15 TCGA-HF-A5NB-01 1 248436767 248436767 G A OR2T33 Missense_Mutation p.A117V 0.14 deleterious(0) benign(0.206) TCGA-HF-A5NB-01 1 25245743 25245743 G A RUNX3 Missense_Mutation p.R192W 0.61 deleterious(0) probably_damaging(1) TCGA-HF-A5NB-01 1 26361733 26361733 C T EXTL1 Silent p.F642F 0.29 TCGA-HF-A5NB-01 1 26648729 26648729 C T AIM1L Missense_Mutation p.R734H 0.30 tolerated(0.09) probably_damaging(1) TCGA-HF-A5NB-01 1 27056058 27056058 A - ARID1A Intron 0.34 TCGA-HF-A5NB-01 1 27088769 27088770 - G ARID1A Frame_Shift_Ins p.S795Efs*22 0.42 TCGA-HF-A5NB-01 1 27100926 27100926 A T ARID1A Missense_Mutation p.Q1403L 0.35 unknown(0) TCGA-HF-A5NB-01 1 27278408 27278408 A G C1orf172 Missense_Mutation p.M155T 0.62 tolerated(0.7) benign(0) TCGA-HF-A5NB-01 1 27278744 27278744 C T C1orf172 Missense_Mutation p.R43H 0.29 tolerated(0.1) benign(0.01) TCGA-HF-A5NB-01 1 28477206 28477206 G A PTAFR Silent p.G109G 0.55 TCGA-HF-A5NB-01 1 32673401 32673401 G A IQCC Silent p.E453E 0.43 TCGA-HF-A5NB-01 1 3328487 3328487 G A PRDM16 Missense_Mutation p.E576K 0.37 tolerated(0.12) benign(0.018) TCGA-HF-A5NB-01 1 35334492 35334492 C T DLGAP3 Silent p.T733T 0.51 TCGA-HF-A5NB-01 1 35470853 35470853 T - ZMYM6 Frame_Shift_Del p.T612Lfs*3 0.33 TCGA-HF-A5NB-01 1 35906480 35906480 A G KIAA0319L Intron 0.31 TCGA-HF-A5NB-01 1 3662383 3662383 C T TP73-AS1 RNA 0.34 TCGA-HF-A5NB-01 1 36937958 36937958 T G CSF3R Missense_Mutation p.E293A 0.45 deleterious(0.01) possibly_damaging(0.673) TCGA-HF-A5NB-01 1 3697548 3697555 AACCAACA CCAAC LRRC47 3'UTR 0.26 TCGA-HF-A5NB-01 1 39853179 39853179 A - MACF1 Frame_Shift_Del p.T2829Lfs*29 0.31 TCGA-HF-A5NB-01 1 39926355 39926355 C T MACF1 Missense_Mutation p.R5079C 0.32 probably_damaging(0.988) TCGA-HF-A5NB-01 1 41204523 41204523 C T NFYC Missense_Mutation p.T3I 0.49 deleterious_low_confidence(0) unknown(0) TCGA-HF-A5NB-01 1 41483684 41483684 C T SLFNL1 Missense_Mutation p.G194S 0.27 tolerated(0.09) benign(0.187) TCGA-HF-A5NB-01 1 42046926 42046926 A G HIVEP3 Silent p.L1181L 0.41 TCGA-HF-A5NB-01 1 42925658 42925658 A - PPCS 3'UTR 0.44 TCGA-HF-A5NB-01 1 43392779 43392779 C - SLC2A1 Frame_Shift_Del p.G471Efs*37 0.32 TCGA-HF-A5NB-01 1 43777369 43777369 G A TIE1 Missense_Mutation p.R454Q 0.42 tolerated(0.15) benign(0.01) TCGA-HF-A5NB-01 1 44121350 44121350 C T KDM4A Missense_Mutation p.T76M 0.06 deleterious(0) benign(0.253) TCGA-HF-A5NB-01 1 44680071 44680071 G A DMAP1 Missense_Mutation p.G52D 0.43 deleterious(0) probably_damaging(0.918) TCGA-HF-A5NB-01 1 45485782 45485782 C T ZSWIM5 Missense_Mutation p.R884H 0.34 deleterious(0.02) unknown(0) TCGA-HF-A5NB-01 1 45887508 45887508 C T TESK2 Missense_Mutation p.R78Q 0.42 deleterious(0.02) possibly_damaging(0.453) TCGA-HF-A5NB-01 1 45960617 45960619 GAT - CCDC163P 3'Flank 0.50 TCGA-HF-A5NB-01 1 47078822 47078822 C T MOB3C Missense_Mutation p.D110N 0.35 deleterious(0.01) possibly_damaging(0.829) TCGA-HF-A5NB-01 1 47279694 47279694 G A CYP4B1 Missense_Mutation p.R245H 0.45 tolerated(0.27) benign(0.077) TCGA-HF-A5NB-01 1 47399631 47399631 G T CYP4A11 Silent p.R403R 0.20 TCGA-HF-A5NB-01 1 48764298 48764299 - A SPATA6 3'UTR 0.25 TCGA-HF-A5NB-01 1 50885032 50885032 G A DMRTA2 Missense_Mutation p.R312W 0.43 deleterious(0) possibly_damaging(0.633) TCGA-HF-A5NB-01 1 52962830 52962830 C T ZCCHC11 Missense_Mutation p.R342H 0.56 deleterious(0.03) probably_damaging(0.996) TCGA-HF-A5NB-01 1 53676493 53676493 T - CPT2 Frame_Shift_Del p.F384Lfs*36 0.28 TCGA-HF-A5NB-01 1 55059688 55059688 C T ACOT11 Silent p.F149F 0.47 TCGA-HF-A5NB-01 1 55199346 55199346 G A TTC4 Nonsense_Mutation p.W314* 0.30 TCGA-HF-A5NB-01 1 6246818 6246818 G A RPL22 Missense_Mutation p.R101C 0.31 deleterious(0.05) benign(0.156) TCGA-HF-A5NB-01 1 6257785 6257785 T - RPL22 Frame_Shift_Del p.K15Rfs*5 0.80 TCGA-HF-A5NB-01 1 64059097 64059097 T C PGM1 5'UTR 0.38 TCGA-HF-A5NB-01 1 66102611 66102611 T G LEPR Silent p.T1137T 0.38 TCGA-HF-A5NB-01 1 6637086 6637086 T C TAS1R1 Missense_Mutation p.F517S 0.66 deleterious(0) probably_damaging(1) TCGA-HF-A5NB-01 1 67558984 67558984 T G C1orf141 Missense_Mutation p.K303Q 0.06 tolerated(0.09) benign(0.019) TCGA-HF-A5NB-01 1 67855787 67855787 C T IL12RB2 Silent p.C674C 0.47 TCGA-HF-A5NB-01 1 70820110 70820110 G - ANKRD13C 5'UTR 0.33 TCGA-HF-A5NB-01 1 74648381 74648382 TT - LRRIQ3 Frame_Shift_Del p.K138Rfs*3 0.29 TCGA-HF-A5NB-01 1 76190488 76190488 G T ACADM Missense_Mutation p.G6W 0.44 deleterious_low_confidence(0.03) benign(0.419) TCGA-HF-A5NB-01 1 78162897 78162897 A - USP33 3'UTR 0.48 TCGA-HF-A5NB-01 1 79095424 79095424 G A IFI44L Missense_Mutation p.A183T 0.44 tolerated(0.2) benign(0.132) TCGA-HF-A5NB-01 1 85666123 85666123 A G SYDE2 Missense_Mutation p.V186A 0.41 deleterious_low_confidence(0) probably_damaging(0.916) TCGA-HF-A5NB-01 1 85790536 85790536 C T DDAH1 Missense_Mutation p.D210N 0.25 deleterious(0.02) possibly_damaging(0.645) TCGA-HF-A5NB-01 1 87045140 87045140 A G CLCA4 Silent p.S742S 0.43 TCGA-HF-A5NB-01 1 89448996 89448996 G A RBMXL1 Missense_Mutation p.R172C 0.44 deleterious(0.03) benign(0.022) TCGA-HF-A5NB-01 1 897302 897302 G T KLHL17 Missense_Mutation p.G196C 0.61 deleterious(0) probably_damaging(0.993) TCGA-HF-A5NB-01 1 907689 907689 G A PLEKHN1 Missense_Mutation p.R296H 0.53 deleterious(0) probably_damaging(0.989) TCGA-HF-A5NB-01 1 91404923 91404923 C T ZNF644 Missense_Mutation p.R663Q 0.04 tolerated(0.15) possibly_damaging(0.597) TCGA-HF-A5NB-01 1 91727835 91727836 - A HFM1 Frame_Shift_Ins p.I1401Yfs*2 0.44 TCGA-HF-A5NB-01 1 92711099 92711099 T C C1orf146 Silent p.T137T 0.11 TCGA-HF-A5NB-01 1 93599280 93599280 A - MTF2 Frame_Shift_Del p.G397Efs*6 0.49 TCGA-HF-A5NB-01 1 93988925 93988925 T A FNBP1L Missense_Mutation p.F73L 0.18 tolerated(1) benign(0.001) TCGA-HF-A5NB-01 1 94054579 94054579 C T BCAR3 Missense_Mutation p.G295D 0.28 tolerated(0.34) benign(0.021) TCGA-HF-A5NB-01 1 94564519 94564519 A C ABCA4 Missense_Mutation p.L200R 0.46 deleterious(0) probably_damaging(0.999) TCGA-HF-A5NB-01 1 95363163 95363163 C T CNN3 3'UTR 0.50 TCGA-HF-A5NB-01 20 10030131 10030131 G A ANKEF1 Missense_Mutation p.R305Q 0.48 deleterious(0) benign(0.011) TCGA-HF-A5NB-01 20 1294131 1294131 C T SDCBP2 Silent p.S79S 0.43 TCGA-HF-A5NB-01 20 13752128 13752128 T C ESF1 Missense_Mutation p.T418A 0.45 tolerated(0.79) benign(0.001) TCGA-HF-A5NB-01 20 17434596 17434596 C T PCSK2 Silent p.A365A 0.41 TCGA-HF-A5NB-01 20 18123315 18123315 G A CSRP2BP Missense_Mutation p.S4N 0.24 tolerated_low_confidence(1) unknown(0) TCGA-HF-A5NB-01 20 19977342 19977342 C T RIN2 Silent p.S789S 0.30 TCGA-HF-A5NB-01 20 21306994 21306994 G A XRN2 Silent p.L51L 0.35 TCGA-HF-A5NB-01 20 21492668 21492668 C T NKX2-2 Missense_Mutation p.A239T 0.50 tolerated(0.13) benign(0.072) TCGA-HF-A5NB-01 20 21695215 21695215 G A PAX1 Missense_Mutation p.R460Q 0.62 tolerated_low_confidence(0.34) benign(0.002) TCGA-HF-A5NB-01 20 23066570 23066570 G A CD93 Missense_Mutation p.T87M 0.58 tolerated(0.07) possibly_damaging(0.695) TCGA-HF-A5NB-01 20 23346288 23346288 G A GZF1 Missense_Mutation p.R423Q 0.46 tolerated(0.31) probably_damaging(0.922) TCGA-HF-A5NB-01 20 23433335 23433335 C A CST11 Missense_Mutation p.M38I 0.09 tolerated(0.16) benign(0) TCGA-HF-A5NB-01 20 2398195 2398195 G A TGM6 Missense_Mutation p.A552T 0.45 tolerated(0.95) benign(0.002) TCGA-HF-A5NB-01 20 25462630 25462630 C T NINL Missense_Mutation p.R595Q 0.38 tolerated(0.24) benign(0.018) TCGA-HF-A5NB-01 20 3016327 3016327 G A PTPRA Missense_Mutation p.V673I 0.53 tolerated(0.13) probably_damaging(0.993) TCGA-HF-A5NB-01 20 30432308 30432308 C T FOXS1 3'UTR 0.43 TCGA-HF-A5NB-01 20 3065238 3065238 C - AVP Frame_Shift_Del p.G28Afs*11 0.22 TCGA-HF-A5NB-01 20 30671800 30671800 C T HCK Silent p.P212P 0.37 TCGA-HF-A5NB-01 20 31624295 31624295 A G BPIFB6 Missense_Mutation p.M208V 0.40 tolerated(0.45) benign(0.005) TCGA-HF-A5NB-01 20 33303156 33303156 C T NCOA6 Silent p.A2054A 0.45 TCGA-HF-A5NB-01 20 33842406 33842407 - T MMP24 Frame_Shift_Ins p.A225Cfs*12 0.35 TCGA-HF-A5NB-01 20 33894555 33894555 C T UQCC1 Missense_Mutation p.A227T 0.05 deleterious(0) probably_damaging(1) TCGA-HF-A5NB-01 20 35060502 35060502 G A DLGAP4 Missense_Mutation p.E128K 0.48 tolerated(0.82) benign(0.308) TCGA-HF-A5NB-01 20 35207225 35207225 G A TGIF2 Silent p.A16A 0.36 TCGA-HF-A5NB-01 20 3673663 3673663 G A SIGLEC1 Silent p.A1208A 0.28 TCGA-HF-A5NB-01 20 3766003 3766003 C A CENPB Missense_Mutation p.E376D 0.64 tolerated(0.39) unknown(0) TCGA-HF-A5NB-01 20 40044003 40044003 C A CHD6 Missense_Mutation p.M2254I 0.48 tolerated(0.17) probably_damaging(0.968) TCGA-HF-A5NB-01 20 40877443 40877443 A G PTPRT Silent p.S732S 0.52 TCGA-HF-A5NB-01 20 411096 411096 T C RBCK1 3'UTR 0.51 TCGA-HF-A5NB-01 20 4163028 4163028 G - SMOX Frame_Shift_Del p.G303Afs*20 0.29 TCGA-HF-A5NB-01 20 44050026 44050026 C - PIGT Frame_Shift_Del p.P348Qfs*11 0.40 TCGA-HF-A5NB-01 20 44678329 44678329 T C SLC12A5 Missense_Mutation p.L717P 0.45 deleterious(0.01) possibly_damaging(0.757) TCGA-HF-A5NB-01 20 45923465 45923465 A G ZMYND8 Missense_Mutation p.I171T 0.46 tolerated(0.15) benign(0.008) TCGA-HF-A5NB-01 20 4771163 4771163 C T RASSF2 Silent p.T157T 0.47 TCGA-HF-A5NB-01 20 4837734 4837735 - T SLC23A2 Frame_Shift_Ins p.Y613Ifs*32 0.38 TCGA-HF-A5NB-01 20 49508203 49508204 - T ADNP Frame_Shift_Ins p.A1017Gfs*6 0.34 TCGA-HF-A5NB-01 20 49520469 49520470 - T ADNP Frame_Shift_Ins p.I22Nfs*3 0.33 TCGA-HF-A5NB-01 20 50051837 50051837 A G NFATC2 Silent p.V640V 0.42 TCGA-HF-A5NB-01 20 55204551 55204551 G - TFAP2C 5'UTR 0.36 TCGA-HF-A5NB-01 20 57829451 57829452 - A ZNF831 Frame_Shift_Ins p.T1565Nfs*4 0.33 TCGA-HF-A5NB-01 20 5924808 5924808 T - TRMT6 Frame_Shift_Del p.K153Nfs*9 0.50 TCGA-HF-A5NB-01 20 60754368 60754368 G A SS18L1 3'UTR 0.57 TCGA-HF-A5NB-01 20 60962714 60962714 A G RPS21 Missense_Mutation p.Q33R 0.17 deleterious(0) benign(0.253) TCGA-HF-A5NB-01 20 61453152 61453152 G A COL9A3 Missense_Mutation p.R138H 0.48 tolerated(0.15) unknown(0) TCGA-HF-A5NB-01 20 61833992 61833992 C T YTHDF1 Missense_Mutation p.V434I 0.40 tolerated(0.14) benign(0.126) TCGA-HF-A5NB-01 21 17191025 17191025 T A USP25 Missense_Mutation p.F314I 0.52 deleterious(0) possibly_damaging(0.637) TCGA-HF-A5NB-01 21 22782727 22782727 T C NCAM2 Silent p.A443A 0.53 TCGA-HF-A5NB-01 21 30342949 30342949 A G LTN1 Missense_Mutation p.I413T 0.26 deleterious(0) possibly_damaging(0.786) TCGA-HF-A5NB-01 21 31852613 31852613 G A KRTAP19-1 Silent p.Y8Y 0.47 TCGA-HF-A5NB-01 21 31874311 31874311 C T KRTAP19-5 Missense_Mutation p.R33H 0.37 tolerated_low_confidence(0.5) unknown(0) TCGA-HF-A5NB-01 21 33043971 33043974 TCTC - SCAF4 Frame_Shift_Del p.R1061Ifs*22 0.39 TCGA-HF-A5NB-01 21 33044290 33044290 G A SCAF4 Missense_Mutation p.P956S 0.50 unknown(0) TCGA-HF-A5NB-01 21 34012043 34012043 G A SYNJ1 Missense_Mutation p.A1251V 0.51 tolerated_low_confidence(0.55) benign(0.019) TCGA-HF-A5NB-01 21 37833700 37833700 G A CLDN14 Silent p.A98A 0.40 TCGA-HF-A5NB-01 21 38858865 38858865 C T DYRK1A Nonsense_Mutation p.R205* 0.27 TCGA-HF-A5NB-01 21 40585404 40585404 T C BRWD1 Intron 0.59 TCGA-HF-A5NB-01 21 41719670 41719670 G A DSCAM Silent p.D379D 0.40 TCGA-HF-A5NB-01 21 43230617 43230617 C T PRDM15 Missense_Mutation p.V1215I 0.53 tolerated(0.34) benign(0.024) TCGA-HF-A5NB-01 21 43838703 43838703 C T UBASH3A Missense_Mutation p.T344M 0.50 deleterious(0) probably_damaging(0.993) TCGA-HF-A5NB-01 21 43988503 43988503 G A SLC37A1 Missense_Mutation p.A460T 0.50 deleterious(0) probably_damaging(1) TCGA-HF-A5NB-01 21 44437106 44437106 C T PKNOX1 Missense_Mutation p.A204V 0.52 tolerated(0.39) benign(0.119) TCGA-HF-A5NB-01 21 44488641 44488643 CTT - CBS In_Frame_Del p.K98del 0.16 TCGA-HF-A5NB-01 21 44589147 44589147 C T CRYAA 5'UTR 0.40 TCGA-HF-A5NB-01 21 44841005 44841006 - C SIK1 Frame_Shift_Ins p.V212Rfs*17 0.30 TCGA-HF-A5NB-01 21 45564898 45564898 C T C21orf33 3'UTR 0.41 TCGA-HF-A5NB-01 21 45959752 45959752 G - KRTAP10-1 Frame_Shift_Del p.C95Afs*233 0.24 TCGA-HF-A5NB-01 21 45987878 45987878 G - TSPEAR Frame_Shift_Del p.L32Wfs*19 0.28 TCGA-HF-A5NB-01 21 47421962 47421962 C T COL6A1 Missense_Mutation p.R682W 0.28 deleterious(0.02) probably_damaging(0.986) TCGA-HF-A5NB-01 21 48064360 48064360 C T PRMT2 Missense_Mutation p.T96M 0.08 tolerated(0.1) benign(0.375) TCGA-HF-A5NB-01 22 17601382 17601382 G A CECR6 Silent p.G212G 0.52 TCGA-HF-A5NB-01 22 18185098 18185098 C T BCL2L13 Silent p.G182G 0.40 TCGA-HF-A5NB-01 22 18607010 18607010 G A TUBA8 Missense_Mutation p.R105Q 0.54 deleterious_low_confidence(0.02) probably_damaging(0.996) TCGA-HF-A5NB-01 22 19121751 19121751 C T DGCR14 Silent p.L463L 0.37 TCGA-HF-A5NB-01 22 19365412 19365412 G A HIRA Silent p.G531G 0.48 TCGA-HF-A5NB-01 22 19504403 19504403 T - CDC45 Frame_Shift_Del p.F574Lfs*5 0.34 TCGA-HF-A5NB-01 22 20097661 20097661 C T DGCR8 3'UTR 0.40 TCGA-HF-A5NB-01 22 20230164 20230164 G A RTN4R Silent p.N164N 0.49 TCGA-HF-A5NB-01 22 20759779 20759779 G T ZNF74 Missense_Mutation p.Q152H 0.30 tolerated(0.11) benign(0.19) TCGA-HF-A5NB-01 22 20936976 20936976 C - MED15 Frame_Shift_Del p.Q453Sfs*41 0.42 TCGA-HF-A5NB-01 22 22677150 22677150 C A IGLV1-51 Missense_Mutation p.P60T 0.23 deleterious(0.02) benign(0.323) TCGA-HF-A5NB-01 22 22749551 22749551 G T IGLV7-43 Missense_Mutation p.Q25H 0.33 deleterious(0) probably_damaging(0.999) TCGA-HF-A5NB-01 22 22764303 22764303 A G IGLV1-40 Splice_Site p.X16_splice 0.49 TCGA-HF-A5NB-01 22 22764505 22764505 T A IGLV1-40 Missense_Mutation p.F83I 0.47 deleterious_low_confidence(0) possibly_damaging(0.537) TCGA-HF-A5NB-01 22 22869029 22869029 T - ZNF280A Frame_Shift_Del p.N309Ifs*5 0.34 TCGA-HF-A5NB-01 22 23482437 23482437 G A RTDR1 Silent p.P57P 0.47 TCGA-HF-A5NB-01 22 24939902 24939902 C T GUCD1 Missense_Mutation p.R179H 0.46 deleterious(0.02) benign(0.006) TCGA-HF-A5NB-01 22 24982310 24982310 C T FAM211B Silent p.S164S 0.45 TCGA-HF-A5NB-01 22 26829603 26829603 C - ASPHD2 Frame_Shift_Del p.P9Rfs*6 0.50 TCGA-HF-A5NB-01 22 28194945 28194945 C T MN1 Silent p.Q529Q 0.44 TCGA-HF-A5NB-01 22 29446744 29446744 C T ZNRF3 Nonsense_Mutation p.R859* 0.39 TCGA-HF-A5NB-01 22 29709914 29709916 GTC - RASL10A In_Frame_Del p.D94del 0.51 TCGA-HF-A5NB-01 22 29754817 29754817 T C AP1B1 Silent p.A141A 0.08 TCGA-HF-A5NB-01 22 30822826 30822826 T C MTFP1 Silent p.A63A 0.39 TCGA-HF-A5NB-01 22 30952062 30952062 C T GAL3ST1 Silent p.A50A 0.51 TCGA-HF-A5NB-01 22 31679059 31679059 A G PIK3IP1 3'UTR 0.44 TCGA-HF-A5NB-01 22 32266593 32266593 A C DEPDC5 Silent p.T1107T 0.07 TCGA-HF-A5NB-01 22 32914091 32914091 G A SYN3 Missense_Mutation p.R517C 0.44 tolerated(0.06) probably_damaging(0.994) TCGA-HF-A5NB-01 22 33679305 33679305 T C LARGE Missense_Mutation p.N587S 0.42 tolerated(1) benign(0.006) TCGA-HF-A5NB-01 22 36960418 36960418 G A CACNG2 Missense_Mutation p.R318C 0.25 deleterious(0) probably_damaging(0.982) TCGA-HF-A5NB-01 22 37709525 37709527 GAA - CYTH4 In_Frame_Del p.K389del 0.32 TCGA-HF-A5NB-01 22 38021904 38021904 T G GGA1 Silent p.P347P 0.48 TCGA-HF-A5NB-01 22 38021958 38021958 T G GGA1 Splice_Site p.X365_splice 0.25 TCGA-HF-A5NB-01 22 38211680 38211680 G A GCAT Silent p.T301T 0.46 TCGA-HF-A5NB-01 22 38481242 38481242 T C BAIAP2L2 3'UTR 0.38 TCGA-HF-A5NB-01 22 38536071 38536071 G A PLA2G6 Silent p.L239L 0.55 TCGA-HF-A5NB-01 22 38690425 38690425 G A CSNK1E Missense_Mutation p.T334M 0.33 tolerated_low_confidence(0.07) benign(0.09) TCGA-HF-A5NB-01 22 38823978 38823978 G A KCNJ4 Missense_Mutation p.R54C 0.38 deleterious(0) probably_damaging(0.988) TCGA-HF-A5NB-01 22 38897211 38897211 T - DDX17 Frame_Shift_Del p.K121Sfs*4 0.35 TCGA-HF-A5NB-01 22 39413823 39413823 G A APOBEC3C Missense_Mutation p.C76Y 0.46 tolerated(1) possibly_damaging(0.851) TCGA-HF-A5NB-01 22 39629457 39629457 C T PDGFB Missense_Mutation p.R78H 0.46 deleterious(0.01) possibly_damaging(0.854) TCGA-HF-A5NB-01 22 40075761 40075761 T C CACNA1I Missense_Mutation p.I1810T 0.28 deleterious(0) benign(0.152) TCGA-HF-A5NB-01 22 41075574 41075574 G A MCHR1 Missense_Mutation p.G42D 0.44 deleterious_low_confidence(0.02) benign(0.017) TCGA-HF-A5NB-01 22 41609865 41609865 C T L3MBTL2 Intron 0.45 TCGA-HF-A5NB-01 22 42458967 42458967 G A NAGA Missense_Mutation p.T274M 0.20 deleterious(0) possibly_damaging(0.847) TCGA-HF-A5NB-01 22 42540321 42540321 A G RP4-669P10.16 5'Flank 0.27 TCGA-HF-A5NB-01 22 42973086 42973086 C T SERHL2 3'Flank 0.20 TCGA-HF-A5NB-01 22 42998021 42998021 A G POLDIP3 Silent p.P164P 0.17 TCGA-HF-A5NB-01 22 43821191 43821191 G A MPPED1 Missense_Mutation p.R67H 0.41 tolerated(0.08) probably_damaging(0.999) TCGA-HF-A5NB-01 22 44335873 44335873 C T PNPLA3 Missense_Mutation p.A327V 0.53 tolerated(0.39) benign(0.027) TCGA-HF-A5NB-01 22 50512679 50512679 T C MLC1 Missense_Mutation p.H227R 0.09 tolerated_low_confidence(0.09) probably_damaging(0.993) TCGA-HF-A5NB-01 22 50616139 50616139 G A PANX2 Missense_Mutation p.R333H 0.43 deleterious(0.02) probably_damaging(0.984) TCGA-HF-A5NB-01 22 50705110 50705110 A G MAPK11 Intron 0.53 TCGA-HF-A5NB-01 22 50727399 50727399 C T PLXNB2 Missense_Mutation p.R414Q 0.40 tolerated(0.68) benign(0.046) TCGA-HF-A5NB-01 22 50853038 50853038 G A PPP6R2 Missense_Mutation p.G158S 0.17 deleterious(0.02) benign(0.175) TCGA-HF-A5NB-01 22 50969689 50969689 A G ODF3B Missense_Mutation p.Y117H 0.38 tolerated(0.08) possibly_damaging(0.878) TCGA-HF-A5NB-01 22 51049139 51049139 G A MAPK8IP2 Missense_Mutation p.A802T 0.62 deleterious(0) probably_damaging(0.998) TCGA-HF-A5NB-01 22 51117811 51117811 C T SHANK3 Silent p.N280N 0.31 TCGA-HF-A5NB-01 2 109086477 109086477 A - GCC2 Frame_Shift_Del p.N233Ifs*12 0.33 TCGA-HF-A5NB-01 2 109087914 109087914 T - GCC2 Frame_Shift_Del p.L712Cfs*16 0.31 TCGA-HF-A5NB-01 2 111881584 111881584 C A BCL2L11 Missense_Mutation p.L88M 0.38 deleterious(0.03) probably_damaging(0.998) TCGA-HF-A5NB-01 2 112614257 112614258 - T ANAPC1 Splice_Site p.X484_splice 0.17 TCGA-HF-A5NB-01 2 118583856 118583856 T G DDX18 Missense_Mutation p.H511Q 0.61 deleterious(0) probably_damaging(1) TCGA-HF-A5NB-01 2 118854284 118854284 T A INSIG2 Missense_Mutation p.I51N 0.52 deleterious(0) possibly_damaging(0.837) TCGA-HF-A5NB-01 2 119600465 119600465 C T EN1 3'UTR 0.70 TCGA-HF-A5NB-01 2 119604508 119604508 G T EN1 Missense_Mutation p.P79Q 0.46 deleterious_low_confidence(0.03) unknown(0) TCGA-HF-A5NB-01 2 120236459 120236459 G A SCTR Missense_Mutation p.P77S 0.46 deleterious(0.01) probably_damaging(0.998) TCGA-HF-A5NB-01 2 122125358 122125358 C - CLASP1 Frame_Shift_Del p.G1231Vfs*4 0.26 TCGA-HF-A5NB-01 2 127808729 127808729 C T BIN1 Splice_Site p.X487_splice 0.46 TCGA-HF-A5NB-01 2 128252501 128252502 - T IWS1 Frame_Shift_Ins p.P583Afs*17 0.15 TCGA-HF-A5NB-01 2 128495613 128495613 T C WDR33 Intron 0.51 TCGA-HF-A5NB-01 2 130921967 130921967 T - SMPD4 Frame_Shift_Del p.M321Cfs*53 0.29 TCGA-HF-A5NB-01 2 131356362 131356362 C T CFC1 Missense_Mutation p.G34S 0.18 tolerated(0.89) benign(0.002) TCGA-HF-A5NB-01 2 131520251 131520251 C - AMER3 Frame_Shift_Del p.P204Rfs*62 0.31 TCGA-HF-A5NB-01 2 131688637 131688637 C T ARHGEF4 Missense_Mutation p.T36I 0.26 deleterious_low_confidence(0) benign(0.033) TCGA-HF-A5NB-01 2 132290249 132290249 C - CCDC74A Frame_Shift_Del p.P259Qfs*2 0.37 TCGA-HF-A5NB-01 2 136528141 136528141 A G UBXN4 Missense_Mutation p.R220G 0.70 tolerated(0.2) benign(0.028) TCGA-HF-A5NB-01 2 141083365 141083365 G A LRP1B Silent p.G4102G 0.56 TCGA-HF-A5NB-01 2 141232882 141232882 G A LRP1B Silent p.C3150C 0.12 TCGA-HF-A5NB-01 2 141356220 141356220 A T LRP1B Missense_Mutation p.Y2392N 0.55 possibly_damaging(0.485) TCGA-HF-A5NB-01 2 143713778 143713778 T - KYNU Frame_Shift_Del p.F149Lfs*12 0.31 TCGA-HF-A5NB-01 2 144704568 144704568 A G GTDC1 3'UTR 0.42 TCGA-HF-A5NB-01 2 151326681 151326681 G A RND3 Silent p.S185S 0.33 TCGA-HF-A5NB-01 2 152320291 152320291 G A RIF1 Silent p.R1419R 0.44 TCGA-HF-A5NB-01 2 152363455 152363455 G A NEB Missense_Mutation p.R7842C 0.24 probably_damaging(0.989) TCGA-HF-A5NB-01 2 152490260 152490260 C T NEB Missense_Mutation p.V3108M 0.46 possibly_damaging(0.674) TCGA-HF-A5NB-01 2 152550921 152550922 - T NEB Frame_Shift_Ins p.N604Kfs*12 0.37 TCGA-HF-A5NB-01 2 154335100 154335100 G A RPRM 5'UTR 0.33 TCGA-HF-A5NB-01 2 160697257 160697257 C T LY75-CD302 Missense_Mutation p.G1164R 0.43 deleterious(0) probably_damaging(0.998) TCGA-HF-A5NB-01 2 1652960 1652960 G - PXDN Frame_Shift_Del p.N865Mfs*25 0.32 TCGA-HF-A5NB-01 2 170506881 170506882 - T CCDC173 Frame_Shift_Ins p.N370Kfs*19 0.31 TCGA-HF-A5NB-01 2 170917592 170917592 A G UBR3 Missense_Mutation p.T1597A 0.37 tolerated(0.44) benign(0) TCGA-HF-A5NB-01 2 171700575 171700575 C T GAD1 Missense_Mutation p.P220L 0.40 deleterious(0.01) benign(0.317) TCGA-HF-A5NB-01 2 172563834 172563834 C T DYNC1I2 Silent p.S94S 0.53 TCGA-HF-A5NB-01 2 172945101 172945101 G A METAP1D Silent p.A325A 0.05 TCGA-HF-A5NB-01 2 173830318 173830318 G A RAPGEF4 Missense_Mutation p.D243N 0.48 deleterious(0) probably_damaging(0.998) TCGA-HF-A5NB-01 2 173855614 173855614 A G RAPGEF4 Missense_Mutation p.N484S 0.28 tolerated(1) benign(0.003) TCGA-HF-A5NB-01 2 173891417 173891417 G A RAPGEF4 Missense_Mutation p.V791M 0.45 tolerated(0.17) possibly_damaging(0.459) TCGA-HF-A5NB-01 2 176959239 176959239 C T HOXD13 Silent p.C271C 0.46 TCGA-HF-A5NB-01 2 176981597 176981597 T - HOXD10 Frame_Shift_Del p.L14* 0.31 TCGA-HF-A5NB-01 2 17698737 17698737 T - RAD51AP2 Frame_Shift_Del p.T316Lfs*2 0.13 TCGA-HF-A5NB-01 2 177015141 177015141 C T HOXD3 5'UTR 0.33 TCGA-HF-A5NB-01 2 177016313 177016313 A - HOXD3 5'UTR 0.35 TCGA-HF-A5NB-01 2 177053626 177053626 C T HOXD1 Missense_Mutation p.R33W 0.32 deleterious(0) possibly_damaging(0.454) TCGA-HF-A5NB-01 2 179458690 179458690 A G TTN Missense_Mutation p.V19477A 0.45 TCGA-HF-A5NB-01 2 179468731 179468731 C T TTN Missense_Mutation p.G18228D 0.39 TCGA-HF-A5NB-01 2 179478831 179478831 A G TTN Silent p.Y16431Y 0.34 TCGA-HF-A5NB-01 2 179507021 179507021 G A TTN Missense_Mutation p.R13501C 0.32 TCGA-HF-A5NB-01 2 179544076 179544076 C T TTN Silent p.P11244P 0.41 TCGA-HF-A5NB-01 2 179584325 179584325 T - TTN Frame_Shift_Del p.N7965Tfs*27 0.33 TCGA-HF-A5NB-01 2 179611793 179611793 C - TTN Intron 0.30 TCGA-HF-A5NB-01 2 179615031 179615031 T C TTN Intron 0.47 TCGA-HF-A5NB-01 2 179638999 179638999 T C TTN Missense_Mutation p.E2331G 0.48 TCGA-HF-A5NB-01 2 182783504 182783504 T C SSFA2 Missense_Mutation p.V963A 0.47 tolerated(0.11) possibly_damaging(0.511) TCGA-HF-A5NB-01 2 186670614 186670614 T A FSIP2 Silent p.I5616I 0.43 TCGA-HF-A5NB-01 2 191109687 191109687 A - HIBCH Frame_Shift_Del p.S273Qfs*21 0.33 TCGA-HF-A5NB-01 2 1921068 1921068 G - MYT1L Frame_Shift_Del p.C509Vfs*7 0.32 TCGA-HF-A5NB-01 2 192701032 192701032 G A SDPR Missense_Mutation p.R299W 0.40 deleterious(0.01) possibly_damaging(0.857) TCGA-HF-A5NB-01 2 196801374 196801374 A - DNAH7 Frame_Shift_Del p.L1074Cfs*23 0.30 TCGA-HF-A5NB-01 2 197157416 197157416 C T HECW2 Missense_Mutation p.R958Q 0.39 deleterious(0) probably_damaging(0.999) TCGA-HF-A5NB-01 2 197637717 197637717 T - GTF3C3 Frame_Shift_Del p.K664Nfs*5 0.30 TCGA-HF-A5NB-01 2 200136980 200136980 T - SATB2 Frame_Shift_Del p.N719Mfs*21 0.38 TCGA-HF-A5NB-01 2 201534337 201534337 T - AOX1 Frame_Shift_Del p.F1281Sfs*7 0.37 TCGA-HF-A5NB-01 2 20175357 20175357 A G WDR35 Silent p.S168S 0.45 TCGA-HF-A5NB-01 2 202262222 202262223 - A TRAK2 Intron 0.29 TCGA-HF-A5NB-01 2 203329701 203329701 A C BMPR2 Missense_Mutation p.Q82H 0.43 deleterious(0) probably_damaging(1) TCGA-HF-A5NB-01 2 203420130 203420130 A - BMPR2 Frame_Shift_Del p.N583Tfs*44 0.32 TCGA-HF-A5NB-01 2 204334981 204334981 G T RAPH1 Intron 0.04 TCGA-HF-A5NB-01 2 207953304 207953304 A G KLF7 Silent p.G245G 0.47 TCGA-HF-A5NB-01 2 209190916 209190916 C T PIKFYVE Silent p.V1127V 0.40 TCGA-HF-A5NB-01 2 215843156 215843156 T - ABCA12 Frame_Shift_Del p.N1671Ifs*4 0.29 TCGA-HF-A5NB-01 2 215845305 215845305 C T ABCA12 Missense_Mutation p.A1548T 0.39 deleterious(0) probably_damaging(0.999) TCGA-HF-A5NB-01 2 216960776 216960776 G A TMEM169 Silent p.A30A 0.45 TCGA-HF-A5NB-01 2 217070056 217070056 C T XRCC5 3'UTR 0.26 TCGA-HF-A5NB-01 2 219525791 219525791 A C BCS1L Silent p.T27T 0.38 TCGA-HF-A5NB-01 2 220090249 220090249 G A ATG9A Silent p.C86C 0.47 TCGA-HF-A5NB-01 2 220101121 220101121 G A ANKZF1 Missense_Mutation p.R712H 0.48 deleterious(0.04) benign(0.017) TCGA-HF-A5NB-01 2 220346104 220346104 C T SPEG Silent p.F1816F 0.53 TCGA-HF-A5NB-01 2 226273712 226273712 C T NYAP2 Missense_Mutation p.A39V 0.50 deleterious(0.04) probably_damaging(0.996) TCGA-HF-A5NB-01 2 228221829 228221829 G A MFF Missense_Mutation p.R342H 0.35 deleterious(0) probably_damaging(0.998) TCGA-HF-A5NB-01 2 228736382 228736382 G A DAW1 5'UTR 0.42 TCGA-HF-A5NB-01 2 231041380 231041380 T A SP110 Intron 0.53 TCGA-HF-A5NB-01 2 231682479 231682479 A G CAB39 Missense_Mutation p.E235G 0.46 deleterious(0) probably_damaging(0.995) TCGA-HF-A5NB-01 2 231988551 231988551 T - HTR2B 5'UTR 0.31 TCGA-HF-A5NB-01 2 233198607 233198607 G A DIS3L2 Missense_Mutation p.A690T 0.38 deleterious(0) probably_damaging(0.987) TCGA-HF-A5NB-01 2 233245588 233273667 2:233245588-233273667 - ALPP large deletion 0.25 TCGA-HF-A5NB-01 2 233246070 233246070 C T ALPP Silent p.S434S 0.11 TCGA-HF-A5NB-01 2 233349512 233349513 - G ECEL1 Frame_Shift_Ins p.H353Pfs*59 0.31 TCGA-HF-A5NB-01 2 233748147 233748147 G A NGEF Missense_Mutation p.P544L 0.53 deleterious(0.02) benign(0.157) TCGA-HF-A5NB-01 2 237405854 237405854 C T IQCA1 Silent p.T96T 0.43 TCGA-HF-A5NB-01 2 24110723 24110725 AAC - ATAD2B In_Frame_Del p.L184del 0.35 TCGA-HF-A5NB-01 2 242066792 242066792 G A PASK Missense_Mutation p.A513V 0.46 tolerated(0.9) benign(0.02) TCGA-HF-A5NB-01 2 242187497 242187498 - T HDLBP Frame_Shift_Ins p.S551Kfs*2 0.31 TCGA-HF-A5NB-01 2 242187714 242187714 G C HDLBP Missense_Mutation p.T521R 0.45 deleterious(0.02) benign(0.152) TCGA-HF-A5NB-01 2 24929597 24929597 C T NCOA1 Missense_Mutation p.R420C 0.38 tolerated(0.2) possibly_damaging(0.634) TCGA-HF-A5NB-01 2 24933898 24933898 G A NCOA1 Silent p.A839A 0.36 TCGA-HF-A5NB-01 2 24964684 24964684 G A NCOA1 Missense_Mutation p.R1112H 0.41 deleterious(0) probably_damaging(0.994) TCGA-HF-A5NB-01 2 25170372 25170372 A G DNAJC27 3'UTR 0.41 TCGA-HF-A5NB-01 2 27280173 27280173 A G AGBL5 Missense_Mutation p.Y513C 0.47 deleterious(0) probably_damaging(0.999) TCGA-HF-A5NB-01 2 27449471 27449471 T C CAD Missense_Mutation p.Y704H 0.46 deleterious(0) probably_damaging(0.995) TCGA-HF-A5NB-01 2 27454389 27454389 C T CAD Missense_Mutation p.R781C 0.34 deleterious(0) probably_damaging(1) TCGA-HF-A5NB-01 2 277054 277054 A - ACP1 Frame_Shift_Del p.K124Nfs*61 0.31 TCGA-HF-A5NB-01 2 29294099 29294099 C A C2orf71 Missense_Mutation p.R1010L 0.48 tolerated(0.76) benign(0.014) TCGA-HF-A5NB-01 2 29379233 29379233 A - CLIP4 Frame_Shift_Del p.D396Ifs*19 0.26 TCGA-HF-A5NB-01 2 31165121 31165121 C A GALNT14 Missense_Mutation p.D298Y 0.44 deleterious(0.04) benign(0.013) TCGA-HF-A5NB-01 2 31805979 31805979 T C SRD5A2 RNA 0.37 TCGA-HF-A5NB-01 2 32476213 32476213 C T NLRC4 Silent p.R240R 0.46 TCGA-HF-A5NB-01 2 37143270 37143270 G A STRN Silent p.Y121Y 0.25 TCGA-HF-A5NB-01 2 37193434 37193434 T G STRN Missense_Mutation p.H58P 0.42 deleterious(0) probably_damaging(0.953) TCGA-HF-A5NB-01 2 37292928 37292928 C T HEATR5B Missense_Mutation p.A435T 0.38 deleterious(0) possibly_damaging(0.612) TCGA-HF-A5NB-01 2 38178726 38178726 G A RMDN2 Missense_Mutation p.R123H 0.39 tolerated_low_confidence(0.62) benign(0) TCGA-HF-A5NB-01 2 38546107 38546107 G A ATL2 Nonsense_Mutation p.R140* 0.39 TCGA-HF-A5NB-01 2 40366562 40366562 C T SLC8A1 Missense_Mutation p.A842T 0.45 deleterious(0) probably_damaging(1) TCGA-HF-A5NB-01 2 44471475 44471475 T - snoU13 5'Flank 0.36 TCGA-HF-A5NB-01 2 46607469 46607469 C T EPAS1 Missense_Mutation p.A553V 0.44 tolerated(0.24) benign(0.018) TCGA-HF-A5NB-01 2 47382465 47382466 GC - C2orf61 5'UTR 0.44 TCGA-HF-A5NB-01 2 48718301 48718301 T C PPP1R21 Silent p.L531L 0.48 TCGA-HF-A5NB-01 2 53977922 53977922 A - ASB3 Frame_Shift_Del p.L153* 0.18 TCGA-HF-A5NB-01 2 55467250 55467250 T - MTIF2 Frame_Shift_Del p.G590Efs*2 0.24 TCGA-HF-A5NB-01 2 58386472 58386472 T - FANCL 3'UTR 0.37 TCGA-HF-A5NB-01 2 69002507 69002507 G A ARHGAP25 Silent p.A72A 0.19 TCGA-HF-A5NB-01 2 69092981 69092981 G A BMP10 Missense_Mutation p.R353C 0.45 deleterious(0.01) probably_damaging(0.953) TCGA-HF-A5NB-01 2 70454866 70454866 C T TIA1 Splice_Site p.X133_splice 0.28 TCGA-HF-A5NB-01 2 73455692 73455692 G A PRADC1 Missense_Mutation p.R153C 0.30 deleterious(0) probably_damaging(0.938) TCGA-HF-A5NB-01 2 73493772 73493772 G A FBXO41 Missense_Mutation p.A315V 0.08 deleterious(0.02) benign(0.049) TCGA-HF-A5NB-01 2 73799576 73799576 A G ALMS1 Silent p.E3523E 0.23 TCGA-HF-A5NB-01 2 74729940 74729940 C - LBX2 Frame_Shift_Del p.G16Efs*99 0.31 TCGA-HF-A5NB-01 2 74756044 74756044 G A AUP1 Missense_Mutation p.P120S 0.05 tolerated(0.13) possibly_damaging(0.692) TCGA-HF-A5NB-01 2 74885009 74885009 C T SEMA4F Silent p.L129L 0.45 TCGA-HF-A5NB-01 2 75099443 75099443 C T HK2 Missense_Mutation p.A131V 0.52 deleterious(0.04) benign(0.138) TCGA-HF-A5NB-01 2 75101398 75101398 G T HK2 Missense_Mutation p.G233C 0.40 deleterious(0) probably_damaging(0.986) TCGA-HF-A5NB-01 2 89399786 89399786 C A IGKV1-16 Silent p.L14L 0.35 TCGA-HF-A5NB-01 2 9002810 9002810 C T MBOAT2 Silent p.T365T 0.44 TCGA-HF-A5NB-01 2 96798409 96798409 C T ASTL Silent p.A169A 0.43 TCGA-HF-A5NB-01 2 96799270 96799270 G A ASTL Missense_Mutation p.R117C 0.46 deleterious(0.03) benign(0.189) TCGA-HF-A5NB-01 2 96919562 96919562 G - TMEM127 Frame_Shift_Del p.P234Lfs*73 0.29 TCGA-HF-A5NB-01 2 96943304 96943304 A G SNRNP200 Silent p.S1968S 0.51 TCGA-HF-A5NB-01 2 97019061 97019061 G A NCAPH Missense_Mutation p.A310T 0.44 tolerated(0.27) benign(0.008) TCGA-HF-A5NB-01 2 97474301 97474301 G A CNNM4 Missense_Mutation p.R651H 0.40 tolerated(0.06) benign(0.006) TCGA-HF-A5NB-01 2 97909730 97909730 G T ANKRD36 Missense_Mutation p.E1511D 0.11 tolerated(0.31) possibly_damaging(0.693) TCGA-HF-A5NB-01 2 99977650 99977650 A - EIF5B Frame_Shift_Del p.K98Rfs*83 0.43 TCGA-HF-A5NB-01 3 100084312 100084312 T C TOMM70A 3'UTR 0.48 TCGA-HF-A5NB-01 3 107910404 107910404 T C IFT57 Silent p.L247L 0.07 TCGA-HF-A5NB-01 3 113804594 113804594 T C QTRTD1 Missense_Mutation p.I376T 0.43 deleterious(0) possibly_damaging(0.543) TCGA-HF-A5NB-01 3 114058003 114058003 G - ZBTB20 Frame_Shift_Del p.P692Lfs*43 0.31 TCGA-HF-A5NB-01 3 118931337 118931337 G T B4GALT4 3'UTR 0.37 TCGA-HF-A5NB-01 3 119196200 119196200 C T POGLUT1 Missense_Mutation p.R121C 0.47 deleterious(0.02) possibly_damaging(0.67) TCGA-HF-A5NB-01 3 120115768 120115768 T C FSTL1 3'UTR 0.48 TCGA-HF-A5NB-01 3 121258394 121258394 C T POLQ Missense_Mutation p.G173S 0.35 deleterious(0) probably_damaging(1) TCGA-HF-A5NB-01 3 122631702 122631702 G - SEMA5B Frame_Shift_Del p.Q959Rfs*147 0.34 TCGA-HF-A5NB-01 3 122642526 122642526 G A SEMA5B Missense_Mutation p.R458C 0.40 deleterious(0) probably_damaging(0.979) TCGA-HF-A5NB-01 3 124418835 124418835 A G AC080008.1 5'Flank 0.40 TCGA-HF-A5NB-01 3 127335911 127335911 G A MCM2 Missense_Mutation p.A575T 0.04 deleterious(0) probably_damaging(0.996) TCGA-HF-A5NB-01 3 12858329 12858329 C T CAND2 Missense_Mutation p.A633V 0.33 deleterious(0.05) benign(0.185) TCGA-HF-A5NB-01 3 128982800 128982800 C T COPG1 Silent p.H394H 0.24 TCGA-HF-A5NB-01 3 129252541 129252541 A T RHO Missense_Mutation p.S343C 0.46 deleterious(0) possibly_damaging(0.491) TCGA-HF-A5NB-01 3 129291461 129291461 G A PLXND1 Missense_Mutation p.T1023M 0.54 tolerated(0.24) benign(0.064) TCGA-HF-A5NB-01 3 129695849 129695849 G A TRH Silent p.E173E 0.39 TCGA-HF-A5NB-01 3 133941263 133941263 T G RYK Missense_Mutation p.K116T 0.44 tolerated(0.15) probably_damaging(0.974) TCGA-HF-A5NB-01 3 136701065 136701065 A C IL20RB Missense_Mutation p.E93D 0.13 tolerated(0.26) benign(0.014) TCGA-HF-A5NB-01 3 138665096 138665096 G C FOXL2 Missense_Mutation p.P157A 0.33 tolerated(0.14) possibly_damaging(0.539) TCGA-HF-A5NB-01 3 141012114 141012114 T - ACPL2 3'UTR 0.47 TCGA-HF-A5NB-01 3 1414122 1414122 A - CNTN6 Frame_Shift_Del p.G547Efs*16 0.40 TCGA-HF-A5NB-01 3 14190163 14190163 C T XPC Silent p.Q773Q 0.11 TCGA-HF-A5NB-01 3 14197885 14197885 G A XPC Silent p.P661P 0.43 TCGA-HF-A5NB-01 3 142030392 142030392 T - XRN1 Frame_Shift_Del p.K1694Nfs*18 0.29 TCGA-HF-A5NB-01 3 142242920 142242921 - C ATR Frame_Shift_Ins p.E1356Gfs*20 0.36 TCGA-HF-A5NB-01 3 142467294 142467294 G A TRPC1 Silent p.R208R 0.47 TCGA-HF-A5NB-01 3 142567220 142567220 C T PCOLCE2 Missense_Mutation p.G96D 0.49 deleterious(0.01) possibly_damaging(0.907) TCGA-HF-A5NB-01 3 145878769 145878769 C - PLOD2 Frame_Shift_Del p.G3Dfs*4 0.57 TCGA-HF-A5NB-01 3 14709638 14709638 A - CCDC174 Frame_Shift_Del p.K303Rfs*2 0.33 TCGA-HF-A5NB-01 3 147128034 147128034 C T ZIC1 Silent p.G45G 0.40 TCGA-HF-A5NB-01 3 14803104 14803104 C T C3orf20 Missense_Mutation p.P826L 0.19 deleterious(0) probably_damaging(0.911) TCGA-HF-A5NB-01 3 14814459 14814459 C - C3orf20 3'UTR 0.53 TCGA-HF-A5NB-01 3 156272762 156272762 C T SSR3 Silent p.V39V 0.50 TCGA-HF-A5NB-01 3 167000204 167000204 G T ZBBX Silent p.S692S 0.43 TCGA-HF-A5NB-01 3 167223102 167223102 T - WDR49 Frame_Shift_Del p.K607Nfs*9 0.35 TCGA-HF-A5NB-01 3 169867027 169867027 G A PHC3 Silent p.N140N 0.42 TCGA-HF-A5NB-01 3 170078515 170078515 C T SKIL Silent p.G132G 0.43 TCGA-HF-A5NB-01 3 17052517 17052517 T A PLCL2 Missense_Mutation p.V434D 0.42 tolerated(0.67) benign(0.004) TCGA-HF-A5NB-01 3 170723849 170723849 T C SLC2A2 Missense_Mutation p.I220V 0.49 tolerated(0.44) benign(0.03) TCGA-HF-A5NB-01 3 172766817 172766817 G A SPATA16 Missense_Mutation p.A227V 0.45 tolerated(0.13) possibly_damaging(0.682) TCGA-HF-A5NB-01 3 178742709 178742709 G T ZMAT3 3'UTR 0.50 TCGA-HF-A5NB-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.38 tolerated(0.11) possibly_damaging(0.529) TCGA-HF-A5NB-01 3 182872079 182872079 T - LAMP3 Frame_Shift_Del p.K50Nfs*15 0.30 TCGA-HF-A5NB-01 3 183209685 183209685 G - KLHL6 3'UTR 0.48 TCGA-HF-A5NB-01 3 183906776 183906776 G A ABCF3 Missense_Mutation p.R326Q 0.35 deleterious(0.01) benign(0.426) TCGA-HF-A5NB-01 3 184008629 184008629 G A ECE2 Silent p.T723T 0.41 TCGA-HF-A5NB-01 3 185198018 185198018 A G MAP3K13 Splice_Site p.X834_splice 0.42 TCGA-HF-A5NB-01 3 185212518 185212518 A - TMEM41A Frame_Shift_Del p.F156Sfs*5 0.40 TCGA-HF-A5NB-01 3 185347590 185347592 GAA - SENP2 In_Frame_Del p.K578del 0.49 TCGA-HF-A5NB-01 3 189526315 189526315 G A TP63 Silent p.T193T 0.51 TCGA-HF-A5NB-01 3 19389245 19389245 C T KCNH8 Missense_Mutation p.P200L 0.11 deleterious(0) probably_damaging(0.999) TCGA-HF-A5NB-01 3 194140669 194140669 A - ATP13A3 Frame_Shift_Del p.L1114Yfs*22 0.35 TCGA-HF-A5NB-01 3 195016526 195016526 T - ACAP2 Frame_Shift_Del p.K528Sfs*12 0.35 TCGA-HF-A5NB-01 3 195515797 195515797 G A MUC4 Missense_Mutation p.P885L 0.11 unknown(0) TCGA-HF-A5NB-01 3 195594643 195594643 G A TNK2 Silent p.Y905Y 0.49 TCGA-HF-A5NB-01 3 195955113 195955113 T C SLC51A Missense_Mutation p.C164R 0.39 deleterious(0) probably_damaging(1) TCGA-HF-A5NB-01 3 20216050 20216050 T - SGOL1 Frame_Shift_Del p.M325Cfs*28 0.48 TCGA-HF-A5NB-01 3 25668727 25668727 C T TOP2B Missense_Mutation p.R651H 0.47 deleterious(0) probably_damaging(0.931) TCGA-HF-A5NB-01 3 32280528 32280528 A C CMTM8 Missense_Mutation p.N22H 0.64 tolerated(0.11) benign(0.276) TCGA-HF-A5NB-01 3 36872548 36872548 G A TRANK1 Silent p.H2798H 0.46 TCGA-HF-A5NB-01 3 38793749 38793749 C T SCN10A Silent p.P572P 0.43 TCGA-HF-A5NB-01 3 40529660 40529660 T - ZNF619 Frame_Shift_Del p.Q596Rfs*35 0.31 TCGA-HF-A5NB-01 3 42236299 42236299 C T TRAK1 Missense_Mutation p.R327C 0.47 deleterious(0) probably_damaging(0.999) TCGA-HF-A5NB-01 3 44612665 44612665 A - ZKSCAN7 Frame_Shift_Del p.K689Nfs*79 0.17 TCGA-HF-A5NB-01 3 44828024 44828024 T C KIF15 Silent p.G199G 0.40 TCGA-HF-A5NB-01 3 45459025 45459025 G A LARS2 Missense_Mutation p.A139T 0.58 deleterious(0) probably_damaging(0.916) TCGA-HF-A5NB-01 3 45637763 45637763 G A LIMD1 Silent p.P464P 0.46 TCGA-HF-A5NB-01 3 46477599 46477599 G A LTF 3'UTR 0.12 TCGA-HF-A5NB-01 3 46560368 46560368 T - LRRC2 3'UTR 0.48 TCGA-HF-A5NB-01 3 46939907 46939907 T G PTH1R Missense_Mutation p.Y195D 0.08 deleterious(0) probably_damaging(0.996) TCGA-HF-A5NB-01 3 4716014 4716014 A C ITPR1 Missense_Mutation p.K847T 0.22 deleterious(0.01) probably_damaging(0.997) TCGA-HF-A5NB-01 3 47452322 47452322 C - PTPN23 Frame_Shift_Del p.L1014Yfs*146 0.36 TCGA-HF-A5NB-01 3 47452656 47452656 G T PTPN23 Missense_Mutation p.S1123I 0.50 probably_damaging(0.997) TCGA-HF-A5NB-01 3 47891369 47891369 G A DHX30 Missense_Mutation p.R1115Q 0.36 tolerated(0.16) benign(0.003) TCGA-HF-A5NB-01 3 47896748 47896750 CCT - MAP4 In_Frame_Del p.G1084del 0.46 TCGA-HF-A5NB-01 3 48631035 48631035 C T COL7A1 Missense_Mutation p.A121T 0.07 unknown(0) TCGA-HF-A5NB-01 3 48668461 48668461 C T SLC26A6 Missense_Mutation p.A367T 0.40 deleterious(0) probably_damaging(0.991) TCGA-HF-A5NB-01 3 48689908 48689908 C T CELSR3 Missense_Mutation p.A1905T 0.48 tolerated(0.59) benign(0.105) TCGA-HF-A5NB-01 3 48701448 48701449 AG - CELSR3 5'Flank 0.47 TCGA-HF-A5NB-01 3 49049664 49049664 G A WDR6 Missense_Mutation p.V263I 0.43 tolerated(0.27) benign(0.369) TCGA-HF-A5NB-01 3 49094405 49094405 C T QRICH1 Missense_Mutation p.A410T 0.38 tolerated(1) benign(0.002) TCGA-HF-A5NB-01 3 49940111 49940112 - C MST1R Frame_Shift_Ins p.A311Gfs*26 0.39 TCGA-HF-A5NB-01 3 50211267 50211267 C T SEMA3F Missense_Mutation p.L52F 0.39 tolerated(0.09) benign(0.02) TCGA-HF-A5NB-01 3 5025163 5025163 G A BHLHE40 Missense_Mutation p.C342Y 0.48 tolerated(0.5) benign(0.414) TCGA-HF-A5NB-01 3 51746778 51746778 G A GRM2 Missense_Mutation p.R247H 0.47 deleterious(0.05) possibly_damaging(0.871) TCGA-HF-A5NB-01 3 52264014 52264014 G A TWF2 Missense_Mutation p.R228W 0.51 deleterious(0) probably_damaging(0.997) TCGA-HF-A5NB-01 3 52397013 52397013 G A DNAH1 Silent p.A1699A 0.47 TCGA-HF-A5NB-01 3 52418981 52418981 C T DNAH1 Silent p.S2834S 0.27 TCGA-HF-A5NB-01 3 52431893 52431896 GGTG - DNAH1 Splice_Site p.X3986_splice 0.44 TCGA-HF-A5NB-01 3 52539097 52539097 G A STAB1 Missense_Mutation p.V486I 0.42 tolerated(1) benign(0.009) TCGA-HF-A5NB-01 3 52637700 52637700 A - PBRM1 Frame_Shift_Del p.F872Lfs*43 0.41 TCGA-HF-A5NB-01 3 52824864 52824864 G T ITIH1 Silent p.S807S 0.43 TCGA-HF-A5NB-01 3 52966157 52966157 A G SFMBT1 Silent p.H207H 0.47 TCGA-HF-A5NB-01 3 57276920 57276921 - A APPL1 Frame_Shift_Ins p.R154Kfs*4 0.46 TCGA-HF-A5NB-01 3 57627438 57627438 A - DENND6A Frame_Shift_Del p.F358Lfs*14 0.31 TCGA-HF-A5NB-01 3 60522629 60522629 A T FHIT Missense_Mutation p.F23I 0.25 tolerated(0.19) benign(0.228) TCGA-HF-A5NB-01 3 62860593 62860593 T C CADPS Missense_Mutation p.T38A 0.38 tolerated(0.3) unknown(0) TCGA-HF-A5NB-01 3 64145699 64145699 T G PRICKLE2 Missense_Mutation p.S105R 0.43 deleterious(0) possibly_damaging(0.57) TCGA-HF-A5NB-01 3 71821968 71821968 A - PROK2 Frame_Shift_Del p.F99Lfs*28 0.35 TCGA-HF-A5NB-01 3 81548302 81548302 A - GBE1 Frame_Shift_Del p.S671Lfs*36 0.41 TCGA-HF-A5NB-01 3 97852456 97852456 A - OR5H1 Frame_Shift_Del p.K307Nfs*? 0.32 TCGA-HF-A5NB-01 3 9934865 9934865 G A JAGN1 Missense_Mutation p.S119N 0.45 tolerated(0.55) benign(0.09) TCGA-HF-A5NB-01 3 9960234 9960234 C T IL17RC Missense_Mutation p.R207C 0.41 deleterious(0) possibly_damaging(0.886) TCGA-HF-A5NB-01 4 100434285 100434285 G A C4orf17 Missense_Mutation p.G16D 0.45 tolerated(0.44) benign(0.015) TCGA-HF-A5NB-01 4 103555981 103555981 C T MANBA Silent p.P793P 0.04 TCGA-HF-A5NB-01 4 104066410 104066410 G A CENPE Nonsense_Mutation p.Q1552* 0.32 TCGA-HF-A5NB-01 4 106345372 106345372 A C PPA2 Silent p.P212P 0.37 TCGA-HF-A5NB-01 4 108829793 108829793 T G SGMS2 Missense_Mutation p.L267R 0.06 deleterious(0) probably_damaging(1) TCGA-HF-A5NB-01 4 108866530 108866530 A - CYP2U1 Frame_Shift_Del p.I301Sfs*18 0.35 TCGA-HF-A5NB-01 4 110603738 110603738 A - CCDC109B Frame_Shift_Del p.K152Nfs*13 0.21 TCGA-HF-A5NB-01 4 114286237 114286237 A G ANK2 Missense_Mutation p.D3644G 0.46 probably_damaging(0.999) TCGA-HF-A5NB-01 4 115544596 115544596 G A UGT8 Missense_Mutation p.R187H 0.43 tolerated(0.33) benign(0.006) TCGA-HF-A5NB-01 4 115891706 115891706 T C NDST4 Silent p.L367L 0.52 TCGA-HF-A5NB-01 4 1165159 1165159 C T SPON2 Silent p.A112A 0.39 TCGA-HF-A5NB-01 4 119979188 119979188 G A SYNPO2 3'UTR 0.62 TCGA-HF-A5NB-01 4 120194823 120194823 T C USP53 Silent p.R737R 0.08 TCGA-HF-A5NB-01 4 123844254 123844254 T C SPATA5 5'UTR 0.39 TCGA-HF-A5NB-01 4 126239872 126239872 G A FAT4 Missense_Mutation p.G769D 0.38 possibly_damaging(0.62) TCGA-HF-A5NB-01 4 126367480 126367480 C T FAT4 Missense_Mutation p.T2409M 0.39 possibly_damaging(0.843) TCGA-HF-A5NB-01 4 1347132 1347132 C A UVSSA Missense_Mutation p.L289I 0.39 tolerated(0.39) benign(0.027) TCGA-HF-A5NB-01 4 13603896 13603898 GAA - BOD1L1 In_Frame_Del p.S1543del 0.35 TCGA-HF-A5NB-01 4 140291445 140291445 A - NAA15 Frame_Shift_Del p.N614Mfs*22 0.44 TCGA-HF-A5NB-01 4 140375250 140375250 A G RAB33B 5'UTR 0.50 TCGA-HF-A5NB-01 4 140394098 140394098 C T RAB33B Missense_Mutation p.H170Y 0.48 tolerated(0.17) benign(0.018) TCGA-HF-A5NB-01 4 140640519 140640519 G A MAML3 Silent p.D1125D 0.46 TCGA-HF-A5NB-01 4 142950056 142950056 C T INPP4B Missense_Mutation p.R885H 0.44 deleterious(0) probably_damaging(0.999) TCGA-HF-A5NB-01 4 144449038 144449038 C T SMARCA5 Silent p.D273D 0.47 TCGA-HF-A5NB-01 4 148539045 148539045 C T TMEM184C 5'UTR 0.48 TCGA-HF-A5NB-01 4 151829978 151829978 A G LRBA Missense_Mutation p.L398P 0.45 deleterious(0.04) probably_damaging(0.99) TCGA-HF-A5NB-01 4 153332934 153332934 C T FBXW7 Missense_Mutation p.V8M 0.45 tolerated_low_confidence(0.06) unknown(0) TCGA-HF-A5NB-01 4 154636802 154636802 T C RNF175 Missense_Mutation p.S215G 0.56 tolerated(0.26) benign(0.002) TCGA-HF-A5NB-01 4 155180 155180 C A ZNF718 RNA 0.19 TCGA-HF-A5NB-01 4 155461161 155461161 T A PLRG1 Silent p.G328G 0.17 TCGA-HF-A5NB-01 4 159091773 159091773 C - FAM198B Frame_Shift_Del p.G252Afs*23 0.09 TCGA-HF-A5NB-01 4 169138145 169138145 T C DDX60 Missense_Mutation p.N1693S 0.47 deleterious(0.01) probably_damaging(0.957) TCGA-HF-A5NB-01 4 170641253 170641253 A - CLCN3 3'UTR 0.24 TCGA-HF-A5NB-01 4 175896700 175896700 T C ADAM29 Silent p.H8H 0.34 TCGA-HF-A5NB-01 4 184603930 184603930 G T TRAPPC11 Missense_Mutation p.G387C 0.39 deleterious(0.01) possibly_damaging(0.472) TCGA-HF-A5NB-01 4 184930647 184930647 C T STOX2 Missense_Mutation p.A219V 0.40 tolerated(0.12) benign(0.211) TCGA-HF-A5NB-01 4 185038029 185038029 C T ENPP6 Missense_Mutation p.A279T 0.33 tolerated(0.24) benign(0.098) TCGA-HF-A5NB-01 4 186272694 186272694 G A SNX25 Silent p.G635G 0.07 TCGA-HF-A5NB-01 4 187455362 187455362 G T MTNR1A Silent p.T178T 0.49 TCGA-HF-A5NB-01 4 187524835 187524835 G A FAT1 Silent p.S3615S 0.39 TCGA-HF-A5NB-01 4 187532710 187532710 G - FAT1 Frame_Shift_Del p.P3228Lfs*42 0.32 TCGA-HF-A5NB-01 4 189012810 189012810 G A TRIML2 Missense_Mutation p.S294L 0.10 tolerated(0.53) possibly_damaging(0.843) TCGA-HF-A5NB-01 4 1988101 1988101 C T NELFA Silent p.A232A 0.19 TCGA-HF-A5NB-01 4 20852260 20852260 G A KCNIP4 Missense_Mutation p.T65I 0.28 deleterious(0.04) benign(0.101) TCGA-HF-A5NB-01 4 23830039 23830039 C G PPARGC1A Missense_Mutation p.Q247H 0.40 deleterious(0.02) benign(0.135) TCGA-HF-A5NB-01 4 36160350 36160350 A G ARAP2 Splice_Site p.X918_splice 0.46 TCGA-HF-A5NB-01 4 41266152 41266152 G A UCHL1 Missense_Mutation p.A187T 0.14 tolerated(0.71) benign(0) TCGA-HF-A5NB-01 4 42119660 42119660 C T BEND4 Missense_Mutation p.A494T 0.44 deleterious_low_confidence(0) probably_damaging(0.959) TCGA-HF-A5NB-01 4 42127680 42127680 T A BEND4 Missense_Mutation p.T356S 0.16 tolerated_low_confidence(0.11) benign(0.026) TCGA-HF-A5NB-01 4 42509100 42509100 C T ATP8A1 Silent p.T673T 0.45 TCGA-HF-A5NB-01 4 46053613 46053613 G A GABRG1 Missense_Mutation p.A320V 0.46 deleterious(0) possibly_damaging(0.862) TCGA-HF-A5NB-01 4 47427858 47427858 C T GABRB1 Silent p.R416R 0.55 TCGA-HF-A5NB-01 4 48859372 48859372 A - OCIAD1 Frame_Shift_Del p.E233Kfs*4 0.34 TCGA-HF-A5NB-01 4 520995 520995 G A PIGG Missense_Mutation p.R746Q 0.48 tolerated(1) benign(0) TCGA-HF-A5NB-01 4 56770575 56770575 C T EXOC1 Missense_Mutation p.R867C 0.44 deleterious(0) probably_damaging(0.982) TCGA-HF-A5NB-01 4 57220869 57220869 A G AASDH Splice_Site p.X404_splice 0.30 TCGA-HF-A5NB-01 4 57272697 57272697 A G PPAT Silent p.N122N 0.42 TCGA-HF-A5NB-01 4 57522177 57522177 C T HOPX Missense_Mutation p.R15H 0.53 deleterious_low_confidence(0.05) unknown(0) TCGA-HF-A5NB-01 4 5811326 5811326 C T EVC Missense_Mutation p.R924C 0.38 deleterious(0) probably_damaging(0.917) TCGA-HF-A5NB-01 4 6383597 6383597 T C PPP2R2C 5'UTR 0.33 TCGA-HF-A5NB-01 4 6611661 6611661 G A MAN2B2 Missense_Mutation p.A715T 0.49 deleterious(0.03) possibly_damaging(0.517) TCGA-HF-A5NB-01 4 6615985 6615985 C T MAN2B2 Silent p.A868A 0.37 TCGA-HF-A5NB-01 4 68530899 68530907 ATACTTACA TACTTAC UBA6 Splice_Site p.X299_splice 0.35 TCGA-HF-A5NB-01 4 69433562 69433562 T - UGT2B17 Frame_Shift_Del p.N214Ifs*2 0.29 TCGA-HF-A5NB-01 4 70346371 70346371 T C UGT2B4 Missense_Mutation p.K523R 0.36 tolerated(0.12) benign(0.11) TCGA-HF-A5NB-01 4 70462026 70462026 T - UGT2A1 Frame_Shift_Del p.N313Tfs*33 0.15 TCGA-HF-A5NB-01 4 70620451 70620451 G A SULT1B1 Nonsense_Mutation p.R72* 0.41 TCGA-HF-A5NB-01 4 71510163 71510163 T G ENAM Missense_Mutation p.L1007R 0.43 tolerated(0.1) probably_damaging(0.921) TCGA-HF-A5NB-01 4 72316121 72316121 G A SLC4A4 Missense_Mutation p.A357T 0.44 deleterious(0) probably_damaging(0.998) TCGA-HF-A5NB-01 4 73184357 73184357 C T ADAMTS3 Missense_Mutation p.G473R 0.19 deleterious(0) probably_damaging(0.991) TCGA-HF-A5NB-01 4 75091031 75091031 T C MTHFD2L Missense_Mutation p.V242A 0.39 deleterious(0.02) probably_damaging(0.999) TCGA-HF-A5NB-01 4 76570541 76570541 A - G3BP2 3'UTR 0.65 TCGA-HF-A5NB-01 4 77084472 77084472 A G SCARB2 Missense_Mutation p.I435T 0.43 deleterious(0) benign(0.012) TCGA-HF-A5NB-01 4 7714523 7714523 A G SORCS2 Silent p.S644S 0.18 TCGA-HF-A5NB-01 4 77227992 77227993 - G FAM47E-STBD1 Frame_Shift_Ins p.G26Rfs*61 0.35 TCGA-HF-A5NB-01 4 7780516 7780516 C T AFAP1 Missense_Mutation p.A624T 0.48 tolerated(0.62) benign(0.001) TCGA-HF-A5NB-01 4 82026979 82026979 C T PRKG2 Missense_Mutation p.R684Q 0.23 deleterious(0.01) probably_damaging(0.978) TCGA-HF-A5NB-01 4 83417311 83417311 T G TMEM150C Missense_Mutation p.K91N 0.22 deleterious(0) probably_damaging(0.999) TCGA-HF-A5NB-01 4 85416930 85416930 C T NKX6-1 Silent p.Q246Q 0.50 TCGA-HF-A5NB-01 4 93225748 93225748 G A GRID2 5'UTR 0.59 TCGA-HF-A5NB-01 4 96141261 96141261 G A UNC5C Missense_Mutation p.A392V 0.31 tolerated(1) benign(0.002) TCGA-HF-A5NB-01 5 102482313 102482313 T C PPIP5K2 Silent p.S190S 0.45 TCGA-HF-A5NB-01 5 1053545 1053545 C T SLC12A7 Missense_Mutation p.V1027I 0.39 tolerated(1) benign(0.004) TCGA-HF-A5NB-01 5 109103387 109103388 - T MAN2A1 Frame_Shift_Ins p.W332Lfs*24 0.14 TCGA-HF-A5NB-01 5 109120450 109120450 C T MAN2A1 Missense_Mutation p.A528V 0.46 deleterious(0) probably_damaging(0.964) TCGA-HF-A5NB-01 5 110560331 110560331 G A CAMK4 Silent p.S50S 0.34 TCGA-HF-A5NB-01 5 110837731 110837731 G A STARD4 Missense_Mutation p.R71C 0.39 tolerated(0.06) benign(0.032) TCGA-HF-A5NB-01 5 118500259 118500259 T G DMXL1 Missense_Mutation p.L1587R 0.43 deleterious(0) probably_damaging(1) TCGA-HF-A5NB-01 5 120022255 120022255 C T PRR16 Missense_Mutation p.H233Y 0.38 tolerated_low_confidence(0.67) possibly_damaging(0.528) TCGA-HF-A5NB-01 5 121187759 121187759 C T FTMT Missense_Mutation p.P34L 0.37 tolerated_low_confidence(0.15) benign(0.062) TCGA-HF-A5NB-01 5 121767760 121767760 G A SNCAIP Missense_Mutation p.A427T 0.47 deleterious(0.01) possibly_damaging(0.544) TCGA-HF-A5NB-01 5 122343600 122343600 A G SNX24 3'UTR 0.38 TCGA-HF-A5NB-01 5 137846299 137846302 TAGA - ETF1 Frame_Shift_Del p.Y345* 0.31 TCGA-HF-A5NB-01 5 138282984 138282984 A G SIL1 Missense_Mutation p.V403A 0.40 tolerated(1) benign(0.002) TCGA-HF-A5NB-01 5 139060718 139060718 G T CXXC5 Missense_Mutation p.G204C 0.47 tolerated(0.09) probably_damaging(0.921) TCGA-HF-A5NB-01 5 139947707 139947707 G A SLC35A4 Missense_Mutation p.R318H 0.44 tolerated(0.59) benign(0) TCGA-HF-A5NB-01 5 140208967 140208967 G A PCDHA6 Missense_Mutation p.G431S 0.39 deleterious_low_confidence(0.01) probably_damaging(0.987) TCGA-HF-A5NB-01 5 140222515 140222515 G A PCDHA8 Missense_Mutation p.A537T 0.24 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-HF-A5NB-01 5 140235844 140235844 G A PCDHA10 Missense_Mutation p.G71R 0.45 tolerated_low_confidence(0.34) benign(0.161) TCGA-HF-A5NB-01 5 140256640 140256640 T C PCDHA12 Missense_Mutation p.L528P 0.45 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-HF-A5NB-01 5 140482650 140482650 C T PCDHB3 3'UTR 0.46 TCGA-HF-A5NB-01 5 140517074 140517074 T C PCDHB5 Silent p.T686T 0.23 TCGA-HF-A5NB-01 5 140573438 140573438 C T PCDHB10 Missense_Mutation p.T438M 0.68 deleterious_low_confidence(0.01) benign(0.37) TCGA-HF-A5NB-01 5 140574250 140574250 C A PCDHB10 Missense_Mutation p.L709M 0.59 tolerated_low_confidence(0.08) benign(0.304) TCGA-HF-A5NB-01 5 140616436 140616436 G A PCDHB18 RNA 0.46 TCGA-HF-A5NB-01 5 140720625 140720625 C T PCDHGA2 Missense_Mutation p.A696V 0.38 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-HF-A5NB-01 5 140744290 140744290 G A PCDHGA5 Silent p.P131P 0.39 TCGA-HF-A5NB-01 5 140744574 140744574 C T PCDHGA5 Missense_Mutation p.T226M 0.47 tolerated_low_confidence(0.07) benign(0.046) TCGA-HF-A5NB-01 5 140753678 140753678 C T PCDHGA6 Missense_Mutation p.R10C 0.38 tolerated_low_confidence(0.28) benign(0.005) TCGA-HF-A5NB-01 5 140801619 140801619 C T PCDHGA11 Silent p.N275N 0.46 TCGA-HF-A5NB-01 5 140810434 140810434 G A PCDHGA12 Silent p.P36P 0.54 TCGA-HF-A5NB-01 5 140865448 140865448 C T PCDHGC4 Silent p.N236N 0.39 TCGA-HF-A5NB-01 5 14316754 14316754 C A TRIO Missense_Mutation p.L545M 0.06 benign(0.03) TCGA-HF-A5NB-01 5 14487619 14487619 C G TRIO Silent p.G2294G 0.20 TCGA-HF-A5NB-01 5 145609441 145609441 G A RBM27 Missense_Mutation p.R186H 0.41 deleterious(0) probably_damaging(0.994) TCGA-HF-A5NB-01 5 145883505 145883506 GA - TCERG1 Frame_Shift_Del p.E892Afs*17 0.35 TCGA-HF-A5NB-01 5 146435239 146435239 C T PPP2R2B Missense_Mutation p.C23Y 0.32 tolerated(0.23) benign(0) TCGA-HF-A5NB-01 5 149212460 149212460 C A PPARGC1B Missense_Mutation p.P275H 0.24 tolerated(0.07) possibly_damaging(0.576) TCGA-HF-A5NB-01 5 149497299 149497299 C T PDGFRB Missense_Mutation p.V1007I 0.41 tolerated(0.47) benign(0.05) TCGA-HF-A5NB-01 5 150076246 150076246 G A RBM22 Missense_Mutation p.R132W 0.43 deleterious(0.04) possibly_damaging(0.462) TCGA-HF-A5NB-01 5 151166189 151166189 T C G3BP1 Missense_Mutation p.M3T 0.25 deleterious(0) benign(0.029) TCGA-HF-A5NB-01 5 151304271 151304271 C T GLRA1 5'UTR 0.62 TCGA-HF-A5NB-01 5 154267870 154267870 C A GEMIN5 Missense_Mutation p.G1476V 0.26 tolerated(0.2) benign(0.097) TCGA-HF-A5NB-01 5 156929945 156929945 G T ADAM19 Missense_Mutation p.L392M 0.47 deleterious(0) probably_damaging(0.991) TCGA-HF-A5NB-01 5 161576143 161576143 C A GABRG2 Missense_Mutation p.L358I 0.19 deleterious(0) probably_damaging(0.997) TCGA-HF-A5NB-01 5 169483693 169483693 A G DOCK2 Missense_Mutation p.Y1434C 0.31 deleterious(0) probably_damaging(0.997) TCGA-HF-A5NB-01 5 169535349 169535349 G - FOXI1 Frame_Shift_Del p.S293Afs*12 0.33 TCGA-HF-A5NB-01 5 170738466 170738466 G A TLX3 Missense_Mutation p.A247T 0.26 deleterious(0.01) benign(0.161) TCGA-HF-A5NB-01 5 175774701 175774702 - G KIAA1191 Frame_Shift_Ins p.K274Qfs*18 0.34 TCGA-HF-A5NB-01 5 175998280 175998280 G A CDHR2 Missense_Mutation p.A128T 0.35 tolerated(0.18) benign(0.048) TCGA-HF-A5NB-01 5 176916471 176916471 T C PDLIM7 Silent p.A264A 0.53 TCGA-HF-A5NB-01 5 177571045 177571045 G A RMND5B Silent p.A210A 0.48 TCGA-HF-A5NB-01 5 177651483 177651483 C T PHYKPL Missense_Mutation p.R195H 0.33 tolerated(0.25) benign(0.005) TCGA-HF-A5NB-01 5 178771114 178771114 C T ADAMTS2 Missense_Mutation p.R63H 0.39 deleterious(0.01) probably_damaging(0.919) TCGA-HF-A5NB-01 5 179260083 179260083 C - SQSTM1 Frame_Shift_Del p.V271Sfs*41 0.34 TCGA-HF-A5NB-01 5 180650959 180650959 C - TRIM41 5'UTR 0.36 TCGA-HF-A5NB-01 5 26885752 26885752 G A CDH9 Missense_Mutation p.A618V 0.51 deleterious(0) probably_damaging(0.986) TCGA-HF-A5NB-01 5 31317909 31317909 G A CDH6 Missense_Mutation p.R587Q 0.42 tolerated(0.11) probably_damaging(0.992) TCGA-HF-A5NB-01 5 32126331 32126331 G A GOLPH3 Missense_Mutation p.A295V 0.42 deleterious(0.03) benign(0.017) TCGA-HF-A5NB-01 5 43174925 43174925 A G ZNF131 Missense_Mutation p.Q487R 0.54 deleterious(0) benign(0.385) TCGA-HF-A5NB-01 5 45303785 45303785 T - HCN1 Frame_Shift_Del p.M512Cfs*19 0.36 TCGA-HF-A5NB-01 5 53752154 53752154 C T HSPB3 3'UTR 0.54 TCGA-HF-A5NB-01 5 54581162 54581162 G T DHX29 Missense_Mutation p.L439M 0.18 deleterious(0.02) probably_damaging(0.999) TCGA-HF-A5NB-01 5 58146999 58146999 T - RAB3C Frame_Shift_Del p.F170Lfs*93 0.34 TCGA-HF-A5NB-01 5 64960110 64960110 A G TRAPPC13 Missense_Mutation p.I350V 0.47 tolerated(0.33) benign(0.004) TCGA-HF-A5NB-01 5 70308439 70308439 G A NAIP Silent p.L102L 0.37 TCGA-HF-A5NB-01 5 70812055 70812055 C T BDP1 Missense_Mutation p.T1606M 0.26 deleterious(0.03) possibly_damaging(0.809) TCGA-HF-A5NB-01 5 71495782 71495782 A G MAP1B Silent p.P2200P 0.42 TCGA-HF-A5NB-01 5 7396543 7396543 C T ADCY2 Missense_Mutation p.P45L 0.63 deleterious(0) benign(0.057) TCGA-HF-A5NB-01 5 74324983 74324983 G - GCNT4 Frame_Shift_Del p.H294Ifs*14 0.31 TCGA-HF-A5NB-01 5 75591734 75591734 A G SV2C Missense_Mutation p.Q490R 0.50 tolerated(0.2) benign(0.002) TCGA-HF-A5NB-01 5 76028724 76028724 C T F2R Missense_Mutation p.A225V 0.18 tolerated(0.11) benign(0.042) TCGA-HF-A5NB-01 5 76331394 76331394 C T AGGF1 Silent p.D114D 0.49 TCGA-HF-A5NB-01 5 77334907 77334908 TT - AP3B1 Frame_Shift_Del p.K923Tfs*11 0.36 TCGA-HF-A5NB-01 5 7817074 7817074 C T ADCY2 Silent p.N993N 0.29 TCGA-HF-A5NB-01 5 78379101 78379101 G A BHMT2 Missense_Mutation p.A229T 0.05 tolerated(0.06) benign(0.282) TCGA-HF-A5NB-01 5 79282821 79282821 G A MTX3 Missense_Mutation p.R170C 0.43 deleterious(0.05) benign(0.012) TCGA-HF-A5NB-01 5 81571879 81571879 T - RPS23 3'UTR 0.35 TCGA-HF-A5NB-01 5 89757037 89757037 G A MBLAC2 Nonsense_Mutation p.R263* 0.48 TCGA-HF-A5NB-01 5 95067839 95067839 T - RHOBTB3 Intron 0.72 TCGA-HF-A5NB-01 5 95728563 95728563 A G PCSK1 3'UTR 0.32 TCGA-HF-A5NB-01 5 96363457 96363457 C T LNPEP Missense_Mutation p.T962I 0.36 deleterious(0.03) benign(0.282) TCGA-HF-A5NB-01 6 105243555 105243555 C T HACE1 Silent p.R274R 0.43 TCGA-HF-A5NB-01 6 107389825 107389825 G A BEND3 3'UTR 0.20 TCGA-HF-A5NB-01 6 107955683 107955683 C T SOBP Silent p.H545H 0.30 TCGA-HF-A5NB-01 6 109850222 109850222 T - AK9 Frame_Shift_Del p.R1209Gfs*39 0.41 TCGA-HF-A5NB-01 6 110944514 110944514 A G CDK19 Silent p.P304P 0.45 TCGA-HF-A5NB-01 6 111208777 111208777 G T AMD1 Missense_Mutation p.Q60H 0.21 tolerated(0.44) probably_damaging(0.95) TCGA-HF-A5NB-01 6 111686487 111686487 A G REV3L Missense_Mutation p.V2245A 0.20 deleterious(0.05) benign(0.142) TCGA-HF-A5NB-01 6 117199034 117199034 C T RFX6 Missense_Mutation p.A100V 0.39 tolerated(0.32) benign(0.001) TCGA-HF-A5NB-01 6 117710992 117710992 A G ROS1 Missense_Mutation p.L427P 0.52 deleterious(0.04) possibly_damaging(0.729) TCGA-HF-A5NB-01 6 119669652 119669652 G A MAN1A1 Silent p.R193R 0.43 TCGA-HF-A5NB-01 6 119669653 119669653 C A MAN1A1 Missense_Mutation p.R193L 0.42 tolerated(0.07) benign(0.001) TCGA-HF-A5NB-01 6 119669655 119669655 G A MAN1A1 Silent p.I192I 0.43 TCGA-HF-A5NB-01 6 121768987 121768987 G A GJA1 Missense_Mutation p.A332T 0.32 tolerated(0.31) benign(0.006) TCGA-HF-A5NB-01 6 126248861 126248861 G C NCOA7 Missense_Mutation p.G859A 0.37 deleterious(0) probably_damaging(0.998) TCGA-HF-A5NB-01 6 13206168 13206168 A C PHACTR1 Silent p.T262T 0.50 TCGA-HF-A5NB-01 6 133137998 133137998 T C RPS12 Intron 0.44 TCGA-HF-A5NB-01 6 133783599 133783599 C A EYA4 Nonsense_Mutation p.Y188* 0.37 TCGA-HF-A5NB-01 6 133783615 133783615 G A EYA4 Missense_Mutation p.D194N 0.50 tolerated_low_confidence(0.21) probably_damaging(0.998) TCGA-HF-A5NB-01 6 137018382 137018382 A G MAP3K5 Missense_Mutation p.L317P 0.45 deleterious(0) probably_damaging(0.976) TCGA-HF-A5NB-01 6 137815021 137815021 A G OLIG3 Missense_Mutation p.M96T 0.48 deleterious(0) probably_damaging(0.954) TCGA-HF-A5NB-01 6 138566720 138566720 C T KIAA1244 Silent p.A219A 0.32 TCGA-HF-A5NB-01 6 139167798 139167798 G A ECT2L Missense_Mutation p.R296Q 0.42 tolerated(0.08) benign(0.025) TCGA-HF-A5NB-01 6 139235873 139235873 G T REPS1 Silent p.A581A 0.18 TCGA-HF-A5NB-01 6 139564337 139564337 C T TXLNB Missense_Mutation p.A461T 0.46 tolerated(0.06) benign(0.201) TCGA-HF-A5NB-01 6 146243967 146243967 C T SHPRH Missense_Mutation p.R1184H 0.39 tolerated(0.18) benign(0.003) TCGA-HF-A5NB-01 6 148840760 148840760 C T SASH1 Missense_Mutation p.P314S 0.12 tolerated_low_confidence(0.06) benign(0.293) TCGA-HF-A5NB-01 6 155055003 155055003 G A SCAF8 5'UTR 0.48 TCGA-HF-A5NB-01 6 159044609 159044609 C T TMEM181 Silent p.Y445Y 0.39 TCGA-HF-A5NB-01 6 159407432 159407432 C A RSPH3 Nonsense_Mutation p.E218* 0.05 TCGA-HF-A5NB-01 6 159654490 159654490 C T FNDC1 Silent p.P982P 0.57 TCGA-HF-A5NB-01 6 160207001 160207001 T - TCP1 Frame_Shift_Del p.N103Mfs*5 0.33 TCGA-HF-A5NB-01 6 160493000 160493000 C A IGF2R Missense_Mutation p.P1501H 0.45 tolerated(0.54) possibly_damaging(0.895) TCGA-HF-A5NB-01 6 160494894 160494894 G A IGF2R Missense_Mutation p.D1685N 0.44 deleterious(0.02) probably_damaging(0.929) TCGA-HF-A5NB-01 6 163987081 163987081 A - QKI Intron 0.36 TCGA-HF-A5NB-01 6 168323554 168323554 C T MLLT4 Missense_Mutation p.P969L 0.52 tolerated(0.17) probably_damaging(0.992) TCGA-HF-A5NB-01 6 17837174 17837174 C T KIF13A Missense_Mutation p.A364T 0.39 deleterious(0.03) probably_damaging(0.999) TCGA-HF-A5NB-01 6 18237647 18237647 C G DEK Missense_Mutation p.S288T 0.89 deleterious(0.03) possibly_damaging(0.827) TCGA-HF-A5NB-01 6 26205189 26205189 A G HIST1H4E 3'UTR 0.36 TCGA-HF-A5NB-01 6 26247039 26247039 C T HIST1H4G Missense_Mutation p.R56H 0.87 deleterious(0.04) probably_damaging(0.997) TCGA-HF-A5NB-01 6 28502011 28502011 A - GPX5 3'UTR 0.50 TCGA-HF-A5NB-01 6 29395256 29395256 G A OR11A1 Nonsense_Mutation p.Q55* 0.91 TCGA-HF-A5NB-01 6 31130320 31130320 C T TCF19 Silent p.G288G 0.91 TCGA-HF-A5NB-01 6 31594957 31594957 C - PRRC2A Frame_Shift_Del p.P426Lfs*145 0.54 TCGA-HF-A5NB-01 6 31602641 31602641 C - PRRC2A Frame_Shift_Del p.K1685Rfs*9 0.11 TCGA-HF-A5NB-01 6 31605244 31605244 C T PRRC2A Missense_Mutation p.R2119C 0.53 unknown(0) TCGA-HF-A5NB-01 6 31852462 31852462 G - EHMT2 Frame_Shift_Del p.L855Cfs*36 0.34 TCGA-HF-A5NB-01 6 32134769 32134769 G T EGFL8 Missense_Mutation p.K139N 0.25 deleterious(0.01) possibly_damaging(0.812) TCGA-HF-A5NB-01 6 32157643 32157643 C - PBX2 Frame_Shift_Del p.G17Afs*5 0.77 TCGA-HF-A5NB-01 6 33235041 33235041 C T VPS52 Missense_Mutation p.R350H 0.06 deleterious(0) probably_damaging(1) TCGA-HF-A5NB-01 6 33284500 33284500 C T ZBTB22 Missense_Mutation p.G65D 0.48 deleterious(0) probably_damaging(1) TCGA-HF-A5NB-01 6 33284752 33284753 - G ZBTB22 5'UTR 0.62 TCGA-HF-A5NB-01 6 33608292 33608292 G A ITPR3 Missense_Mutation p.A41T 0.90 tolerated(0.32) benign(0.018) TCGA-HF-A5NB-01 6 33744762 33744762 C T LEMD2 Missense_Mutation p.V444M 0.98 deleterious(0) probably_damaging(0.958) TCGA-HF-A5NB-01 6 33746073 33746073 G A LEMD2 Missense_Mutation p.R368C 0.46 deleterious(0) probably_damaging(0.998) TCGA-HF-A5NB-01 6 38120125 38120125 T C ZFAND3 Missense_Mutation p.V215A 0.50 deleterious(0) probably_damaging(0.971) TCGA-HF-A5NB-01 6 40399677 40399677 G - LRFN2 Frame_Shift_Del p.K393Sfs*39 0.28 TCGA-HF-A5NB-01 6 41129138 41129138 G A TREM2 Missense_Mutation p.T85I 0.94 tolerated(0.06) benign(0.237) TCGA-HF-A5NB-01 6 41739086 41739086 C T FRS3 Silent p.R250R 0.94 TCGA-HF-A5NB-01 6 43097965 43097965 C T PTK7 Intron 0.91 TCGA-HF-A5NB-01 6 43111274 43111274 A G PTK7 Missense_Mutation p.M731V 0.25 deleterious(0) probably_damaging(0.989) TCGA-HF-A5NB-01 6 44197199 44197199 G A SLC29A1 Silent p.T34T 0.92 TCGA-HF-A5NB-01 6 44227997 44227997 G A NFKBIE Missense_Mutation p.A407V 0.89 tolerated(0.07) possibly_damaging(0.903) TCGA-HF-A5NB-01 6 44253920 44253920 G A TCTE1 Silent p.G209G 0.93 TCGA-HF-A5NB-01 6 46518128 46518128 C T CYP39A1 Missense_Mutation p.R462Q 0.06 tolerated(0.06) benign(0.087) TCGA-HF-A5NB-01 6 47541973 47541973 A - CD2AP Frame_Shift_Del p.K240Nfs*6 0.16 TCGA-HF-A5NB-01 6 52268034 52268034 G A PAQR8 Missense_Mutation p.R8H 0.44 tolerated(0.05) benign(0.001) TCGA-HF-A5NB-01 6 52268989 52268991 CTT - PAQR8 In_Frame_Del p.F329del 0.29 TCGA-HF-A5NB-01 6 52303169 52303169 G A EFHC1 Missense_Mutation p.R118H 0.34 deleterious(0.01) probably_damaging(0.998) TCGA-HF-A5NB-01 6 52957273 52957273 A C FBXO9 Missense_Mutation p.S244R 0.05 tolerated(0.1) benign(0.13) TCGA-HF-A5NB-01 6 55039411 55039411 C - HCRTR2 Frame_Shift_Del p.P11Lfs*11 0.36 TCGA-HF-A5NB-01 6 55198720 55198720 A - GFRAL Frame_Shift_Del p.K100Nfs*9 0.29 TCGA-HF-A5NB-01 6 56436985 56436985 C T DST Missense_Mutation p.G1922D 0.30 possibly_damaging(0.786) TCGA-HF-A5NB-01 6 56462679 56462679 G A DST Silent p.N1395N 0.40 TCGA-HF-A5NB-01 6 56482800 56482800 A C DST Intron 0.37 TCGA-HF-A5NB-01 6 70040443 70040443 A G BAI3 Silent p.G1027G 0.11 TCGA-HF-A5NB-01 6 7405247 7405247 C T RIOK1 Silent p.N363N 0.41 TCGA-HF-A5NB-01 6 7578067 7578067 T C DSP Missense_Mutation p.I978T 0.52 probably_damaging(0.989) TCGA-HF-A5NB-01 6 7601616 7601616 T G SNRNP48 Missense_Mutation p.F152V 0.49 tolerated(0.5) benign(0.007) TCGA-HF-A5NB-01 6 76405534 76405534 A - SENP6 Frame_Shift_Del p.K698Nfs*2 0.39 TCGA-HF-A5NB-01 6 76604978 76604978 G A MYO6 Splice_Site p.X1046_splice 0.39 TCGA-HF-A5NB-01 6 79727095 79727095 A G PHIP Silent p.V368V 0.44 TCGA-HF-A5NB-01 6 87970131 87970131 G T ZNF292 Missense_Mutation p.G2262C 0.12 deleterious(0) probably_damaging(1) TCGA-HF-A5NB-01 6 90605212 90605212 G A GJA10 Missense_Mutation p.G342D 0.26 tolerated(0.49) benign(0.003) TCGA-HF-A5NB-01 6 90642322 90642322 G - BACH2 Frame_Shift_Del p.G778Dfs*19 0.32 TCGA-HF-A5NB-01 6 96973182 96973182 G A UFL1 Missense_Mutation p.V88M 0.39 deleterious(0) probably_damaging(0.997) TCGA-HF-A5NB-01 6 99797236 99797236 C - FAXC Frame_Shift_Del p.V5Lfs*13 0.27 TCGA-HF-A5NB-01 6 99849342 99849343 - T PNISR Frame_Shift_Ins p.E498Rfs*3 0.39 TCGA-HF-A5NB-01 7 100087051 100087052 - G NYAP1 Frame_Shift_Ins p.V572Gfs*4 0.30 TCGA-HF-A5NB-01 7 100212592 100212592 G A MOSPD3 Missense_Mutation p.S205N 0.43 tolerated(0.11) possibly_damaging(0.51) TCGA-HF-A5NB-01 7 100349968 100349968 T C ZAN Missense_Mutation p.I747T 0.25 benign(0.001) TCGA-HF-A5NB-01 7 100349994 100349994 C A ZAN Missense_Mutation p.P756T 0.28 benign(0.003) TCGA-HF-A5NB-01 7 100777155 100777155 C T SERPINE1 Missense_Mutation p.R294C 0.38 deleterious(0.01) probably_damaging(1) TCGA-HF-A5NB-01 7 100802405 100802405 G - AP1S1 Frame_Shift_Del p.D122Mfs*11 0.40 TCGA-HF-A5NB-01 7 102952969 102952969 A G DNAJC2 3'UTR 0.46 TCGA-HF-A5NB-01 7 103124256 103124256 G A RELN Missense_Mutation p.T3342M 0.49 deleterious(0.01) possibly_damaging(0.84) TCGA-HF-A5NB-01 7 107234540 107234540 T - BCAP29 Frame_Shift_Del p.W114Gfs*2 0.31 TCGA-HF-A5NB-01 7 107704407 107704407 T C LAMB4 Missense_Mutation p.T954A 0.39 tolerated(0.99) benign(0.001) TCGA-HF-A5NB-01 7 110764591 110764591 A G LRRN3 Missense_Mutation p.E588G 0.38 deleterious(0) possibly_damaging(0.725) TCGA-HF-A5NB-01 7 114269964 114269964 G A FOXP2 Silent p.Q192Q 0.45 TCGA-HF-A5NB-01 7 114269973 114269973 A G FOXP2 Silent p.Q195Q 0.40 TCGA-HF-A5NB-01 7 116963084 116963084 C T WNT2 5'UTR 0.62 TCGA-HF-A5NB-01 7 120740007 120740007 T C CPED1 Silent p.H259H 0.44 TCGA-HF-A5NB-01 7 1275694 1275694 C T UNCX Missense_Mutation p.S226F 0.40 deleterious(0) benign(0.027) TCGA-HF-A5NB-01 7 127669919 127669919 G A LRRC4 Missense_Mutation p.R259W 0.47 deleterious(0) probably_damaging(1) TCGA-HF-A5NB-01 7 127732149 127732149 A G SND1 3'UTR 0.07 TCGA-HF-A5NB-01 7 127892080 127892080 G T LEP Missense_Mutation p.W3C 0.17 tolerated(1) benign(0) TCGA-HF-A5NB-01 7 129394914 129394914 G T NRF1 Missense_Mutation p.G469C 0.41 deleterious(0.02) probably_damaging(0.993) TCGA-HF-A5NB-01 7 131853240 131853240 C T PLXNA4 Missense_Mutation p.R1370H 0.51 tolerated(0.24) probably_damaging(1) TCGA-HF-A5NB-01 7 134870926 134870926 T C WDR91 Missense_Mutation p.T741A 0.46 deleterious(0) probably_damaging(0.96) TCGA-HF-A5NB-01 7 136849065 136849065 A G hsa-mir-490 Intron 0.45 TCGA-HF-A5NB-01 7 138333865 138333865 G A SVOPL Silent p.G184G 0.35 TCGA-HF-A5NB-01 7 138432304 138432304 A G ATP6V0A4 Missense_Mutation p.Y396H 0.39 deleterious(0) probably_damaging(1) TCGA-HF-A5NB-01 7 138555948 138555948 G A KIAA1549 Silent p.P1502P 0.54 TCGA-HF-A5NB-01 7 142139728 142139728 C T TRBV7-6 Missense_Mutation p.G15R 0.06 tolerated(0.06) benign(0.059) TCGA-HF-A5NB-01 7 143018476 143018476 C T CLCN1 Missense_Mutation p.A151V 0.60 tolerated(0.44) benign(0.03) TCGA-HF-A5NB-01 7 143085619 143085619 G A ZYX Silent p.A394A 0.52 TCGA-HF-A5NB-01 7 144015498 144015498 C T OR2A1 Missense_Mutation p.A94V 0.95 tolerated(0.6) benign(0.002) TCGA-HF-A5NB-01 7 146818244 146818244 T G CNTNAP2 Missense_Mutation p.L310V 0.36 tolerated(0.12) possibly_damaging(0.612) TCGA-HF-A5NB-01 7 148768433 148768433 G A ZNF786 Silent p.D477D 0.16 TCGA-HF-A5NB-01 7 149474938 149474938 A G ZNF467 5'Flank 0.50 TCGA-HF-A5NB-01 7 149558240 149558240 G A ZNF862 Missense_Mutation p.S664N 0.19 tolerated(0.11) benign(0.21) TCGA-HF-A5NB-01 7 150164044 150164044 C T GIMAP8 Silent p.C86C 0.10 TCGA-HF-A5NB-01 7 150440055 150440055 A G GIMAP5 Silent p.K276K 0.32 TCGA-HF-A5NB-01 7 150698355 150698355 A G NOS3 Missense_Mutation p.T424A 0.04 tolerated(0.7) benign(0.173) TCGA-HF-A5NB-01 7 150711190 150711190 A C NOS3 Missense_Mutation p.E1182A 0.38 deleterious_low_confidence(0.02) benign(0.011) TCGA-HF-A5NB-01 7 150774362 150774362 C T FASTK Intron 0.51 TCGA-HF-A5NB-01 7 1524972 1524972 G T INTS1 Missense_Mutation p.P1037H 0.06 deleterious(0) probably_damaging(0.993) TCGA-HF-A5NB-01 7 154684280 154684280 C T DPP6 3'UTR 0.45 TCGA-HF-A5NB-01 7 155604793 155604793 C T SHH Silent p.L8L 0.05 TCGA-HF-A5NB-01 7 21654770 21654770 G A DNAH11 Silent p.L1297L 0.33 TCGA-HF-A5NB-01 7 21892142 21892142 G A DNAH11 Missense_Mutation p.D3659N 0.49 benign(0.111) TCGA-HF-A5NB-01 7 2284282 2284282 C T NUDT1 Nonsense_Mutation p.R48* 0.48 TCGA-HF-A5NB-01 7 23827646 23827646 G A STK31 Silent p.L845L 0.16 TCGA-HF-A5NB-01 7 2641074 2641075 - A IQCE Frame_Shift_Ins p.A540Gfs*5 0.43 TCGA-HF-A5NB-01 7 27141768 27141768 T C HOXA2 Missense_Mutation p.T118A 0.35 tolerated(1) benign(0) TCGA-HF-A5NB-01 7 27212978 27212980 CTT - HOXA10 In_Frame_Del p.K316del 0.43 TCGA-HF-A5NB-01 7 2742485 2742485 G A AMZ1 Missense_Mutation p.R145Q 0.45 deleterious(0) possibly_damaging(0.896) TCGA-HF-A5NB-01 7 27825027 27825027 C A TAX1BP1 Missense_Mutation p.D257E 0.36 deleterious(0.03) probably_damaging(0.977) TCGA-HF-A5NB-01 7 28997630 28997630 G A AC005013.5 Intron 0.50 TCGA-HF-A5NB-01 7 29923497 29923497 C A WIPF3 Silent p.R129R 0.24 TCGA-HF-A5NB-01 7 30793436 30793436 A G INMT Missense_Mutation p.T82A 0.42 deleterious(0) possibly_damaging(0.562) TCGA-HF-A5NB-01 7 30795469 30795469 C T INMT 3'UTR 0.28 TCGA-HF-A5NB-01 7 32910327 32910327 C T KBTBD2 Missense_Mutation p.A168T 0.34 tolerated(0.1) benign(0.012) TCGA-HF-A5NB-01 7 33016069 33016069 A G FKBP9 Missense_Mutation p.I221V 0.43 tolerated(0.37) probably_damaging(0.998) TCGA-HF-A5NB-01 7 37780680 37780680 T - GPR141 Frame_Shift_Del p.F230Lfs*2 0.49 TCGA-HF-A5NB-01 7 38402492 38402492 C T TRGV2 Silent p.G109G 0.74 TCGA-HF-A5NB-01 7 42262807 42262808 - T GLI3 Frame_Shift_Ins p.V16Sfs*2 0.33 TCGA-HF-A5NB-01 7 43917820 43917820 A G URGCP Silent p.H414H 0.49 TCGA-HF-A5NB-01 7 44621388 44621388 C A TMED4 Missense_Mutation p.K65N 0.46 tolerated(0.25) benign(0.026) TCGA-HF-A5NB-01 7 48147084 48147084 G A UPP1 Missense_Mutation p.C258Y 0.46 deleterious(0) probably_damaging(0.999) TCGA-HF-A5NB-01 7 48318390 48318390 G A ABCA13 Silent p.S2533S 0.43 TCGA-HF-A5NB-01 7 48318519 48318519 A - ABCA13 Frame_Shift_Del p.I2579* 0.38 TCGA-HF-A5NB-01 7 4841356 4841356 C T RADIL Missense_Mutation p.G924S 0.46 tolerated(0.3) benign(0.005) TCGA-HF-A5NB-01 7 50611809 50611809 A G DDC Intron 0.20 TCGA-HF-A5NB-01 7 5521290 5521290 C T FBXL18 3'UTR 0.51 TCGA-HF-A5NB-01 7 6210488 6210488 G A CYTH3 Silent p.G228G 0.54 TCGA-HF-A5NB-01 7 64023390 64023390 A G ZNF680 5'UTR 0.46 TCGA-HF-A5NB-01 7 6442042 6442042 G A RAC1 Missense_Mutation p.V201M 0.47 tolerated(0.12) unknown(0) TCGA-HF-A5NB-01 7 6737331 6737331 T C ZNF12 Missense_Mutation p.N43D 0.46 deleterious(0.04) benign(0.151) TCGA-HF-A5NB-01 7 6791127 6791127 A - RSPH10B2 5'Flank 0.86 TCGA-HF-A5NB-01 7 72657208 72657208 A - GTF2IRD2P1 RNA 0.50 TCGA-HF-A5NB-01 7 75051280 75051280 A T POM121C Missense_Mutation p.I752N 0.28 tolerated(0.37) possibly_damaging(0.506) TCGA-HF-A5NB-01 7 76112456 76112456 T C DTX2 Silent p.G300G 0.19 TCGA-HF-A5NB-01 7 76610569 76610569 T C UPK3B Intron 0.55 TCGA-HF-A5NB-01 7 86468597 86468597 G A GRM3 Missense_Mutation p.M589I 0.43 tolerated(1) benign(0.001) TCGA-HF-A5NB-01 7 88389278 88389278 C T ZNF804B 5'UTR 0.19 TCGA-HF-A5NB-01 7 88963238 88963238 A G ZNF804B Silent p.L314L 0.14 TCGA-HF-A5NB-01 7 89929354 89929355 - A C7orf63 Frame_Shift_Ins p.N679Kfs*6 0.34 TCGA-HF-A5NB-01 7 91502948 91502949 - T MTERF Frame_Shift_Ins p.R387Kfs*3 0.17 TCGA-HF-A5NB-01 7 92923909 92923909 A - CCDC132 Frame_Shift_Del p.K378Rfs*3 0.31 TCGA-HF-A5NB-01 7 94054448 94054448 G A COL1A2 Missense_Mutation p.G898D 0.40 unknown(0) TCGA-HF-A5NB-01 7 94178933 94178933 G T CASD1 Missense_Mutation p.R601M 0.43 deleterious(0) benign(0.436) TCGA-HF-A5NB-01 7 99270427 99270427 G A CYP3A5 Intron 0.55 TCGA-HF-A5NB-01 7 99457495 99457495 T - CYP3A43 Frame_Shift_Del p.F304Lfs*57 0.36 TCGA-HF-A5NB-01 7 99703164 99703164 T C AP4M1 Splice_Site p.X310_splice 0.08 TCGA-HF-A5NB-01 7 99797877 99797877 C T STAG3 Missense_Mutation p.R566C 0.32 deleterious(0) probably_damaging(0.956) TCGA-HF-A5NB-01 7 99809481 99809481 A G STAG3 Silent p.E1193E 0.18 TCGA-HF-A5NB-01 7 99951056 99951056 T G PILRB 5'UTR 0.35 TCGA-HF-A5NB-01 7 99956506 99956506 G A PILRB Silent p.P86P 0.42 TCGA-HF-A5NB-01 8 103289349 103289349 T - UBR5 Frame_Shift_Del p.E2121Kfs*28 0.47 TCGA-HF-A5NB-01 8 103840782 103840782 C T AZIN1 3'UTR 0.46 TCGA-HF-A5NB-01 8 105001612 105001612 C T RIMS2 Missense_Mutation p.R1003C 0.42 deleterious_low_confidence(0.01) benign(0.01) TCGA-HF-A5NB-01 8 10755310 10755310 T - XKR6 3'UTR 0.48 TCGA-HF-A5NB-01 8 109455851 109455851 C T EMC2 5'Flank 0.29 TCGA-HF-A5NB-01 8 117950505 117950505 G A AARD Missense_Mutation p.R8H 0.45 tolerated(0.35) probably_damaging(0.923) TCGA-HF-A5NB-01 8 121259909 121259909 G A COL14A1 Missense_Mutation p.R846H 0.31 deleterious(0) probably_damaging(1) TCGA-HF-A5NB-01 8 124338214 124338214 C T ATAD2 Silent p.Q1307Q 0.31 TCGA-HF-A5NB-01 8 124340555 124340555 A G ATAD2 Missense_Mutation p.I1248T 0.26 tolerated(0.58) benign(0) TCGA-HF-A5NB-01 8 124384908 124384908 C A ATAD2 Missense_Mutation p.Q113H 0.30 deleterious_low_confidence(0.03) benign(0.01) TCGA-HF-A5NB-01 8 125528019 125528019 T C TATDN1 Silent p.R119R 0.23 TCGA-HF-A5NB-01 8 12958083 12958083 C T DLC1 Missense_Mutation p.R588H 0.34 tolerated(0.26) benign(0.003) TCGA-HF-A5NB-01 8 130789733 130789733 C T GSDMC Missense_Mutation p.R34H 0.32 tolerated(0.38) benign(0.061) TCGA-HF-A5NB-01 8 131130778 131130778 G A ASAP1 Missense_Mutation p.A584V 0.25 deleterious(0) probably_damaging(0.991) TCGA-HF-A5NB-01 8 131792712 131792712 C T ADCY8 Missense_Mutation p.R1227Q 0.26 deleterious_low_confidence(0.02) benign(0) TCGA-HF-A5NB-01 8 133036862 133036862 C T OC90 Missense_Mutation p.A434T 0.26 tolerated(0.4) benign(0.011) TCGA-HF-A5NB-01 8 134232983 134232983 C T WISP1 Missense_Mutation p.P170L 0.30 tolerated(0.12) benign(0.365) TCGA-HF-A5NB-01 8 134488304 134488304 G A ST3GAL1 5'UTR 0.34 TCGA-HF-A5NB-01 8 142202702 142202702 G A DENND3 Silent p.P1112P 0.34 TCGA-HF-A5NB-01 8 142222440 142222440 C T SLC45A4 Silent p.V668V 0.32 TCGA-HF-A5NB-01 8 143558834 143558835 - C BAI1 Frame_Shift_Ins p.Q440Pfs*8 0.29 TCGA-HF-A5NB-01 8 143746126 143746126 C T JRK RNA 0.29 TCGA-HF-A5NB-01 8 144548014 144548014 G A ZC3H3 Missense_Mutation p.P727L 0.21 deleterious(0) probably_damaging(1) TCGA-HF-A5NB-01 8 144810851 144810851 G A FAM83H Silent p.H260H 0.40 TCGA-HF-A5NB-01 8 144877669 144877669 G T SCRIB Missense_Mutation p.A1212E 0.35 probably_damaging(0.953) TCGA-HF-A5NB-01 8 144940392 144940392 C T EPPK1 Missense_Mutation p.A2344T 0.03 probably_damaging(0.995) TCGA-HF-A5NB-01 8 145001807 145001807 C T PLEC Missense_Mutation p.R1313H 0.38 unknown(0) TCGA-HF-A5NB-01 8 145057857 145057857 G A PARP10 Missense_Mutation p.H634Y 0.29 tolerated(0.22) benign(0.043) TCGA-HF-A5NB-01 8 145058497 145058497 C T PARP10 Missense_Mutation p.A521T 0.30 tolerated(0.14) probably_damaging(0.978) TCGA-HF-A5NB-01 8 145095155 145095155 C A SPATC1 Missense_Mutation p.P186H 0.20 deleterious(0.01) benign(0.091) TCGA-HF-A5NB-01 8 145535772 145535772 C T HSF1 Silent p.T328T 0.36 TCGA-HF-A5NB-01 8 145757715 145757715 G A ARHGAP39 Missense_Mutation p.T985I 0.22 deleterious(0.02) benign(0.245) TCGA-HF-A5NB-01 8 1497600 1497600 C - DLGAP2 Frame_Shift_Del p.D249Tfs*31 0.21 TCGA-HF-A5NB-01 8 17611829 17611829 T C MTUS1 Silent p.K496K 0.38 TCGA-HF-A5NB-01 8 17731904 17731904 T C FGL1 Missense_Mutation p.Q124R 0.28 deleterious(0.04) benign(0.376) TCGA-HF-A5NB-01 8 18393171 18393171 A G PSD3 3'UTR 0.34 TCGA-HF-A5NB-01 8 20036898 20036899 GG - SLC18A1 Frame_Shift_Del p.A74Vfs*19 0.41 TCGA-HF-A5NB-01 8 2005485 2005485 G A MYOM2 Missense_Mutation p.A95T 0.30 tolerated(0.38) benign(0.003) TCGA-HF-A5NB-01 8 20107568 20107568 G A LZTS1 Missense_Mutation p.R486C 0.34 deleterious(0.01) possibly_damaging(0.664) TCGA-HF-A5NB-01 8 2020449 2020449 A T MYOM2 Missense_Mutation p.Y273F 0.28 tolerated(0.43) benign(0.003) TCGA-HF-A5NB-01 8 2054333 2054333 G A MYOM2 Missense_Mutation p.V982M 0.36 deleterious(0.01) probably_damaging(0.956) TCGA-HF-A5NB-01 8 22009060 22009060 G A LGI3 Silent p.C257C 0.29 TCGA-HF-A5NB-01 8 22064890 22064890 C T BMP1 Silent p.D812D 0.33 TCGA-HF-A5NB-01 8 22473324 22473324 C - CCAR2 Frame_Shift_Del p.L505* 0.27 TCGA-HF-A5NB-01 8 23429101 23429101 C T SLC25A37 Silent p.A250A 0.73 TCGA-HF-A5NB-01 8 24348316 24348316 G T ADAM7 Missense_Mutation p.C424F 0.28 deleterious(0) probably_damaging(1) TCGA-HF-A5NB-01 8 24813270 24813270 G A CTD-2168K21.2 5'Flank 0.22 TCGA-HF-A5NB-01 8 25174531 25174531 C T DOCK5 Missense_Mutation p.R443W 0.06 deleterious(0) probably_damaging(1) TCGA-HF-A5NB-01 8 25246735 25246735 G A DOCK5 Silent p.S1420S 0.30 TCGA-HF-A5NB-01 8 25253058 25253058 G A DOCK5 Splice_Site p.X1510_splice 0.06 TCGA-HF-A5NB-01 8 25257429 25257429 T - DOCK5 Frame_Shift_Del p.F1571Lfs*19 0.49 TCGA-HF-A5NB-01 8 26238187 26238188 - T BNIP3L 5'Flank 0.30 TCGA-HF-A5NB-01 8 26365125 26365125 A T PNMA2 3'UTR 0.32 TCGA-HF-A5NB-01 8 26513310 26513310 T G DPYSL2 3'UTR 0.43 TCGA-HF-A5NB-01 8 27321015 27321015 A G CHRNA2 Silent p.T315T 0.35 TCGA-HF-A5NB-01 8 27957400 27957400 G A ELP3 Missense_Mutation p.D59N 0.37 deleterious(0) possibly_damaging(0.835) TCGA-HF-A5NB-01 8 28574161 28574161 G A EXTL3 Silent p.P195P 0.34 TCGA-HF-A5NB-01 8 28876337 28876337 C T HMBOX1 Missense_Mutation p.T253M 0.32 deleterious(0.01) probably_damaging(0.915) TCGA-HF-A5NB-01 8 28967446 28967446 G A KIF13B Missense_Mutation p.R1358C 0.28 deleterious(0) probably_damaging(1) TCGA-HF-A5NB-01 8 30889547 30889547 C T PURG Missense_Mutation p.R251Q 0.35 tolerated(0.27) benign(0.019) TCGA-HF-A5NB-01 8 30889838 30889838 G A PURG Missense_Mutation p.A154V 0.26 tolerated(0.12) benign(0.192) TCGA-HF-A5NB-01 8 32621456 32621456 C T NRG1 Missense_Mutation p.R492W 0.30 deleterious(0.04) probably_damaging(0.994) TCGA-HF-A5NB-01 8 37691605 37691605 G - GPR124 Frame_Shift_Del p.A525Pfs*12 0.28 TCGA-HF-A5NB-01 8 37720397 37720397 T - RAB11FIP1 3'UTR 0.32 TCGA-HF-A5NB-01 8 38124859 38124859 G T PPAPDC1B Missense_Mutation p.S130Y 0.08 tolerated(0.83) benign(0.022) TCGA-HF-A5NB-01 8 39775661 39775661 C T IDO1 Missense_Mutation p.R80C 0.28 deleterious(0) possibly_damaging(0.855) TCGA-HF-A5NB-01 8 41166308 41166308 C T SFRP1 Missense_Mutation p.R124Q 0.19 tolerated(0.06) probably_damaging(0.993) TCGA-HF-A5NB-01 8 41583328 41583328 G A ANK1 Missense_Mutation p.T221M 0.28 deleterious(0.03) probably_damaging(1) TCGA-HF-A5NB-01 8 41834733 41834733 G A KAT6A Missense_Mutation p.R386W 0.32 possibly_damaging(0.889) TCGA-HF-A5NB-01 8 42012265 42012266 - A AP3M2 Frame_Shift_Ins p.S22Kfs*9 0.24 TCGA-HF-A5NB-01 8 42608307 42608311 AAAAG - CHRNA6 3'UTR 0.22 TCGA-HF-A5NB-01 8 43046661 43046661 C A HGSNAT Silent p.P391P 0.25 TCGA-HF-A5NB-01 8 48626145 48626145 G A SPIDR Silent p.P761P 0.32 TCGA-HF-A5NB-01 8 48701555 48701555 T - PRKDC Frame_Shift_Del p.N3604Tfs*48 0.25 TCGA-HF-A5NB-01 8 52321305 52321305 C T PXDNL Missense_Mutation p.R960Q 0.28 deleterious(0) probably_damaging(0.991) TCGA-HF-A5NB-01 8 53573774 53573774 C T RB1CC1 Missense_Mutation p.V476I 0.29 deleterious(0.05) benign(0.127) TCGA-HF-A5NB-01 8 54891666 54891666 A G TCEA1 Silent p.H248H 0.34 TCGA-HF-A5NB-01 8 61773656 61773656 A G CHD7 Missense_Mutation p.Y2601C 0.26 possibly_damaging(0.87) TCGA-HF-A5NB-01 8 67039502 67039502 A C TRIM55 5'UTR 0.08 TCGA-HF-A5NB-01 8 67578011 67578011 C A VCPIP1 Missense_Mutation p.G395C 0.14 deleterious(0) probably_damaging(0.998) TCGA-HF-A5NB-01 8 68005795 68005795 A T CSPP1 Missense_Mutation p.E143D 0.12 deleterious(0) probably_damaging(0.998) TCGA-HF-A5NB-01 8 68992787 68992787 A G PREX2 Silent p.K584K 0.29 TCGA-HF-A5NB-01 8 87076814 87076814 C T PSKH2 Missense_Mutation p.V78I 0.44 tolerated(0.07) benign(0.192) TCGA-HF-A5NB-01 8 8749610 8749610 C T MFHAS1 Missense_Mutation p.R320Q 0.39 tolerated(0.37) benign(0.009) TCGA-HF-A5NB-01 8 89053733 89053733 G A MMP16 Missense_Mutation p.R594C 0.54 deleterious(0) probably_damaging(1) TCGA-HF-A5NB-01 8 90937297 90937298 - AT OSGIN2 Frame_Shift_Ins p.H398Ifs*7 0.29 TCGA-HF-A5NB-01 8 94747621 94747621 C T RBM12B Missense_Mutation p.A340T 0.44 deleterious(0) probably_damaging(0.999) TCGA-HF-A5NB-01 8 95686658 95686658 T C ESRP1 Silent p.A525A 0.47 TCGA-HF-A5NB-01 8 95893999 95893999 T C CCNE2 Intron 0.56 TCGA-HF-A5NB-01 9 100843159 100843159 C T NANS Missense_Mutation p.A222V 0.49 tolerated(0.4) benign(0.009) TCGA-HF-A5NB-01 9 103054823 103054823 C T INVS Missense_Mutation p.R762W 0.38 tolerated_low_confidence(0.14) benign(0.001) TCGA-HF-A5NB-01 9 105768192 105768192 C T CYLC2 3'UTR 0.36 TCGA-HF-A5NB-01 9 107299015 107299015 T C OR13C3 Missense_Mutation p.K27R 0.51 tolerated_low_confidence(0.46) benign(0.068) TCGA-HF-A5NB-01 9 108145606 108145606 C A SLC44A1 Missense_Mutation p.P612H 0.20 deleterious(0) probably_damaging(0.982) TCGA-HF-A5NB-01 9 109734364 109734364 G A ZNF462 Missense_Mutation p.S2169N 0.45 benign(0.003) TCGA-HF-A5NB-01 9 111624742 111624742 C T ACTL7A Missense_Mutation p.T47M 0.41 tolerated_low_confidence(0.09) benign(0.009) TCGA-HF-A5NB-01 9 111655266 111655266 C A IKBKAP Missense_Mutation p.Q986H 0.37 deleterious(0) benign(0.396) TCGA-HF-A5NB-01 9 112017874 112017874 G A EPB41L4B Silent p.H362H 0.44 TCGA-HF-A5NB-01 9 112018743 112018743 T G EPB41L4B Missense_Mutation p.Q257P 0.40 deleterious(0) probably_damaging(0.998) TCGA-HF-A5NB-01 9 113065929 113065929 A G TXNDC8 3'UTR 0.35 TCGA-HF-A5NB-01 9 114874102 114874102 G A SUSD1 Missense_Mutation p.R335W 0.37 tolerated(0.07) possibly_damaging(0.836) TCGA-HF-A5NB-01 9 116171948 116171948 T C POLE3 Silent p.S71S 0.47 TCGA-HF-A5NB-01 9 116812048 116812048 C T ZNF618 Silent p.H729H 0.41 TCGA-HF-A5NB-01 9 117093928 117093930 AGA - ORM2 In_Frame_Del p.K138del 0.19 TCGA-HF-A5NB-01 9 117108211 117108211 C T AKNA Missense_Mutation p.R1198Q 0.37 tolerated(0.31) benign(0.007) TCGA-HF-A5NB-01 9 117129908 117129908 G A AKNA Missense_Mutation p.P548L 0.41 tolerated(0.15) benign(0.021) TCGA-HF-A5NB-01 9 117138831 117138831 T C AKNA Missense_Mutation p.D419G 0.18 tolerated(0.17) benign(0.055) TCGA-HF-A5NB-01 9 117797538 117797539 - G TNC Frame_Shift_Ins p.R1911Pfs*12 0.41 TCGA-HF-A5NB-01 9 120476084 120476084 A - TLR4 Frame_Shift_Del p.K561Nfs*11 0.28 TCGA-HF-A5NB-01 9 123182139 123182139 G T CDK5RAP2 Silent p.S1368S 0.06 TCGA-HF-A5NB-01 9 126129513 126129513 G - CRB2 Frame_Shift_Del p.G274Afs*170 0.28 TCGA-HF-A5NB-01 9 126144434 126144434 G A DENND1A Silent p.S769S 0.53 TCGA-HF-A5NB-01 9 127262895 127262895 G A NR5A1 Missense_Mutation p.A115V 0.57 deleterious(0.01) benign(0.318) TCGA-HF-A5NB-01 9 127923150 127923150 A G PPP6C Silent p.G106G 0.19 TCGA-HF-A5NB-01 9 127996334 127996334 A - RABEPK 3'UTR 0.28 TCGA-HF-A5NB-01 9 130494639 130494639 A G TOR2A Intron 0.29 TCGA-HF-A5NB-01 9 130536607 130536607 C T SH2D3C Silent p.T59T 0.14 TCGA-HF-A5NB-01 9 13219560 13219560 G A MPDZ Missense_Mutation p.R362W 0.43 deleterious(0) possibly_damaging(0.655) TCGA-HF-A5NB-01 9 135277150 135277150 G A TTF1 Silent p.L353L 0.40 TCGA-HF-A5NB-01 9 136338543 136338543 T C SLC2A6 Missense_Mutation p.I406V 0.45 tolerated(0.19) benign(0.227) TCGA-HF-A5NB-01 9 136406068 136406068 C T ADAMTSL2 Silent p.D209D 0.41 TCGA-HF-A5NB-01 9 136918679 136918679 C T BRD3 5'UTR 0.60 TCGA-HF-A5NB-01 9 137300040 137300040 C - RXRA Frame_Shift_Del p.L111Wfs*57 0.37 TCGA-HF-A5NB-01 9 137622156 137622156 C T COL5A1 Silent p.V333V 0.48 TCGA-HF-A5NB-01 9 137777737 137777737 G A FCN2 Missense_Mutation p.A185T 0.39 tolerated(0.17) benign(0.018) TCGA-HF-A5NB-01 9 139259649 139259650 - C CARD9 Frame_Shift_Ins p.S460Efs*20 0.46 TCGA-HF-A5NB-01 9 139562790 139562790 G A EGFL7 Missense_Mutation p.G19D 0.33 deleterious(0.01) possibly_damaging(0.632) TCGA-HF-A5NB-01 9 139908668 139908668 G A ABCA2 Missense_Mutation p.R1398C 0.65 tolerated(0.14) benign(0.002) TCGA-HF-A5NB-01 9 140007443 140007443 T C DPP7 Missense_Mutation p.T278A 0.46 tolerated(0.17) benign(0.221) TCGA-HF-A5NB-01 9 140074819 140074819 G A ANAPC2 Silent p.R568R 0.04 TCGA-HF-A5NB-01 9 140732961 140732961 C - EHMT1 3'Flank 0.35 TCGA-HF-A5NB-01 9 17135270 17135271 - G CNTLN Frame_Shift_Ins p.A72Gfs*51 0.87 TCGA-HF-A5NB-01 9 17415802 17415802 A C CNTLN Missense_Mutation p.K938T 0.42 tolerated(0.1) possibly_damaging(0.628) TCGA-HF-A5NB-01 9 19116518 19116518 C - PLIN2 Frame_Shift_Del p.V348* 0.32 TCGA-HF-A5NB-01 9 27009017 27009017 G C IFT74 Splice_Site p.X196_splice 0.32 TCGA-HF-A5NB-01 9 27949151 27949151 G A LINGO2 Missense_Mutation p.R507C 0.52 tolerated(0.05) possibly_damaging(0.513) TCGA-HF-A5NB-01 9 33385030 33385030 A G AQP7 Silent p.H334H 0.44 TCGA-HF-A5NB-01 9 33385606 33385606 A G AQP7 Intron 0.38 TCGA-HF-A5NB-01 9 33386975 33386975 C T AQP7 Missense_Mutation p.R87H 0.16 deleterious(0.04) benign(0.003) TCGA-HF-A5NB-01 9 33442483 33442484 - CA AQP3 Frame_Shift_Ins p.L176Cfs*89 0.38 TCGA-HF-A5NB-01 9 34610689 34610689 A G RPP25L 3'UTR 0.24 TCGA-HF-A5NB-01 9 35043650 35043650 C - C9orf131 Frame_Shift_Del p.C344Afs*49 0.45 TCGA-HF-A5NB-01 9 35547073 35547073 C T RUSC2 Silent p.C185C 0.54 TCGA-HF-A5NB-01 9 35958134 35958134 G A OR2S2 5'UTR 0.56 TCGA-HF-A5NB-01 9 4118143 4118143 G - GLIS3 Frame_Shift_Del p.A446Rfs*110 0.41 TCGA-HF-A5NB-01 9 70993145 70993145 A G PGM5 Missense_Mutation p.I98V 0.17 deleterious(0.01) possibly_damaging(0.573) TCGA-HF-A5NB-01 9 71155785 71155785 T G TMEM252 5'Flank 0.52 TCGA-HF-A5NB-01 9 73151091 73151091 G A TRPM3 Silent p.R1634R 0.53 TCGA-HF-A5NB-01 9 77300445 77300445 A G RORB Missense_Mutation p.K431E 0.44 deleterious(0.01) benign(0.139) TCGA-HF-A5NB-01 9 77614678 77614678 A - C9orf41 Frame_Shift_Del p.F233Lfs*59 0.37 TCGA-HF-A5NB-01 9 82335072 82335072 C T TLE4 Missense_Mutation p.R568C 0.40 deleterious(0.03) probably_damaging(0.999) TCGA-HF-A5NB-01 9 84208132 84208132 G - TLE1 Frame_Shift_Del p.D464Tfs*27 0.30 TCGA-HF-A5NB-01 9 86258463 86258463 A G IDNK Missense_Mutation p.E111G 0.37 deleterious(0.02) benign(0.175) TCGA-HF-A5NB-01 9 86585198 86585198 G A HNRNPK Missense_Mutation p.R414C 0.06 deleterious(0.03) benign(0.01) TCGA-HF-A5NB-01 9 88631578 88631578 A - NAA35 Frame_Shift_Del p.K567Rfs*6 0.30 TCGA-HF-A5NB-01 9 94486427 94486427 G A ROR2 Silent p.N783N 0.43 TCGA-HF-A5NB-01 9 95055729 95055730 - A IARS 5'UTR 0.33 TCGA-HF-A5NB-01 9 95480119 95480119 C T BICD2 Missense_Mutation p.A740T 0.36 deleterious(0) probably_damaging(1) TCGA-HF-A5NB-01 9 96422507 96422507 A G PHF2 Missense_Mutation p.T455A 0.32 tolerated(1) unknown(0) TCGA-HF-A5NB-01 9 99064269 99064269 G A HSD17B3 Missense_Mutation p.P40S 0.42 deleterious(0.04) possibly_damaging(0.788) TCGA-HF-A5NB-01 X 100169872 100169872 C T XKRX Missense_Mutation p.A269T 0.84 tolerated(0.15) probably_damaging(0.997) TCGA-HF-A5NB-01 X 103045639 103045639 C T PLP1 3'UTR 0.87 TCGA-HF-A5NB-01 X 105153031 105153031 G T NRK Missense_Mutation p.K467N 0.43 deleterious_low_confidence(0) benign(0.372) TCGA-HF-A5NB-01 X 11682888 11682888 C T ARHGAP6 Missense_Mutation p.A21T 0.67 tolerated_low_confidence(0.39) benign(0.001) TCGA-HF-A5NB-01 X 128694527 128694528 - T OCRL Frame_Shift_Ins p.V244Cfs*13 0.30 TCGA-HF-A5NB-01 X 129149140 129149140 C T BCORL1 Nonsense_Mutation p.Q798* 0.87 TCGA-HF-A5NB-01 X 130217917 130217917 C T ARHGAP36 Missense_Mutation p.R177W 0.94 deleterious(0.01) possibly_damaging(0.453) TCGA-HF-A5NB-01 X 134427935 134427935 A G ZNF75D Silent p.G44G 0.05 TCGA-HF-A5NB-01 X 13681448 13681448 C T TCEANC Missense_Mutation p.T304M 0.83 deleterious(0) possibly_damaging(0.511) TCGA-HF-A5NB-01 X 137793044 137793044 T - FGF13 Intron 0.49 TCGA-HF-A5NB-01 X 151092778 151092778 C T MAGEA4 Silent p.G214G 0.87 TCGA-HF-A5NB-01 X 154158195 154158195 T - F8 Frame_Shift_Del p.E1292Rfs*16 0.46 TCGA-HF-A5NB-01 X 15585867 15585867 T - ACE2 Frame_Shift_Del p.N660Ifs*3 0.51 TCGA-HF-A5NB-01 X 18768031 18768031 G A PPEF1 Silent p.T119T 0.10 TCGA-HF-A5NB-01 X 18912389 18912389 C A PHKA2 Missense_Mutation p.S1157I 0.81 deleterious(0.01) benign(0.015) TCGA-HF-A5NB-01 X 21874649 21874649 C T YY2 Missense_Mutation p.P16L 0.92 tolerated(0.19) benign(0.035) TCGA-HF-A5NB-01 X 30322685 30322685 C T NR0B1 3'UTR 0.78 TCGA-HF-A5NB-01 X 37026663 37026663 C T FAM47C Silent p.Y60Y 0.77 TCGA-HF-A5NB-01 X 40588560 40588607 TCCATACTCACCTTTCCACATCAGATTTCCTTGGCAGTCTAAGAAGAA CCATACTCACCTTTCCACATCAAATTTCCTTGGCAGTCTAAGAAG MED14 Splice_Site p.X72_splice 0.26 TCGA-HF-A5NB-01 X 47086480 47086480 T C CDK16 Missense_Mutation p.L482P 0.08 deleterious(0) probably_damaging(0.99) TCGA-HF-A5NB-01 X 54161466 54161466 A C FAM120C Missense_Mutation p.S472A 0.24 tolerated(0.63) benign(0.004) TCGA-HF-A5NB-01 X 63410056 63410056 C T AMER1 Silent p.Q1037Q 0.86 TCGA-HF-A5NB-01 X 64722333 64722333 C T ZC3H12B Silent p.S585S 0.91 TCGA-HF-A5NB-01 X 69519002 69519002 C T KIF4A Missense_Mutation p.R156C 0.91 tolerated(0.05) benign(0.032) TCGA-HF-A5NB-01 X 69637775 69637775 G T KIF4A Missense_Mutation p.G1098V 0.84 tolerated(0.11) probably_damaging(0.935) TCGA-HF-A5NB-01 X 69720350 69720350 C T DLG3 Silent p.G725G 0.66 TCGA-HF-A5NB-01 X 72433767 72433767 T C NAP1L2 Missense_Mutation p.N188D 0.83 tolerated(0.58) benign(0.19) TCGA-HF-A5NB-01 X 73071963 73071963 C T XIST RNA 0.75 TCGA-HF-A5NB-01 X 74742853 74742853 G A ZDHHC15 Nonsense_Mutation p.R3* 0.82 TCGA-HF-A5NB-01 X 99662944 99662944 G A PCDH19 Missense_Mutation p.R218C 0.90 deleterious(0) possibly_damaging(0.719) TCGA-HJ-7597-01 10 100016575 100016575 G A LOXL4 Nonsense_Mutation p.R464* 0.37 TCGA-HJ-7597-01 10 101728961 101728961 G A DNMBP Missense_Mutation p.T60I 0.09 deleterious(0.02) possibly_damaging(0.638) TCGA-HJ-7597-01 10 102048787 102048787 C A PKD2L1 Silent p.P759P 0.27 TCGA-HJ-7597-01 10 102732747 102732747 G A SEMA4G Silent p.P26P 0.27 TCGA-HJ-7597-01 10 102762318 102762318 C T LZTS2 Missense_Mutation p.P8L 0.26 deleterious(0) probably_damaging(0.991) TCGA-HJ-7597-01 10 103436163 103436163 C T FBXW4 Silent p.V97V 0.30 TCGA-HJ-7597-01 10 103987432 103987432 G T ELOVL3 Missense_Mutation p.G51W 0.27 deleterious(0) probably_damaging(1) TCGA-HJ-7597-01 10 104176728 104176728 C T PSD Missense_Mutation p.R23H 0.31 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-HJ-7597-01 10 105046856 105046856 G A INA Missense_Mutation p.R377Q 0.11 deleterious(0) probably_damaging(0.989) TCGA-HJ-7597-01 10 105201638 105201638 C T PDCD11 Missense_Mutation p.A1538V 0.21 tolerated(1) benign(0.001) TCGA-HJ-7597-01 10 105209489 105209489 G A CALHM2 Silent p.I70I 0.07 TCGA-HJ-7597-01 10 118674916 118674916 G A KIAA1598 Silent p.P425P 0.19 TCGA-HJ-7597-01 10 120460914 120460914 A G CACUL1 Missense_Mutation p.F234L 0.31 deleterious(0.01) probably_damaging(0.939) TCGA-HJ-7597-01 10 122661812 122661812 C T WDR11 Nonsense_Mutation p.Q911* 0.12 TCGA-HJ-7597-01 10 124712362 124712365 ACAA - C10orf88 Frame_Shift_Del p.C117Lfs*18 0.17 TCGA-HJ-7597-01 10 126631810 126631810 A - ZRANB1 Frame_Shift_Del p.K251Nfs*2 0.23 TCGA-HJ-7597-01 10 126715374 126715374 C T CTBP2 Missense_Mutation p.A319T 0.29 tolerated_low_confidence(0.09) benign(0.002) TCGA-HJ-7597-01 10 127697890 127697890 A - FANK1 Intron 0.24 TCGA-HJ-7597-01 10 127753389 127753389 G A ADAM12 Missense_Mutation p.T535M 0.08 deleterious(0.04) probably_damaging(0.957) TCGA-HJ-7597-01 10 12940438 12940438 C T CCDC3 Missense_Mutation p.R264H 0.27 tolerated_low_confidence(0.29) benign(0.003) TCGA-HJ-7597-01 10 129881102 129881102 T C PTPRE Missense_Mutation p.Y679H 0.27 deleterious(0) probably_damaging(1) TCGA-HJ-7597-01 10 129899944 129899944 G A MKI67 Missense_Mutation p.R3095C 0.28 deleterious(0.03) probably_damaging(0.967) TCGA-HJ-7597-01 10 22002772 22002772 G A MLLT10 Missense_Mutation p.V591I 0.25 tolerated(0.14) possibly_damaging(0.625) TCGA-HJ-7597-01 10 24669980 24669983 GAAA - KIAA1217 Frame_Shift_Del p.E181Dfs*34 0.34 TCGA-HJ-7597-01 10 30315989 30315989 C - KIAA1462 Frame_Shift_Del p.A1030Qfs*35 0.22 TCGA-HJ-7597-01 10 48428830 48428830 C T GDF10 Silent p.S352S 0.19 TCGA-HJ-7597-01 10 49440209 49440209 A T FRMPD2 Missense_Mutation p.S373T 0.20 tolerated(0.1) possibly_damaging(0.745) TCGA-HJ-7597-01 10 50315809 50315809 C T VSTM4 Missense_Mutation p.R96Q 0.24 tolerated(0.62) benign(0.057) TCGA-HJ-7597-01 10 50574403 50574403 C T DRGX Missense_Mutation p.V189I 0.28 tolerated(0.21) benign(0.214) TCGA-HJ-7597-01 10 51584688 51584688 A G NCOA4 Missense_Mutation p.K279E 0.33 deleterious(0.01) benign(0.222) TCGA-HJ-7597-01 10 51829407 51829407 A T FAM21A Missense_Mutation p.D76V 0.24 deleterious(0) probably_damaging(0.943) TCGA-HJ-7597-01 10 68940148 68940148 C T CTNNA3 Missense_Mutation p.R325Q 0.35 deleterious(0.01) possibly_damaging(0.553) TCGA-HJ-7597-01 10 69647188 69647188 C T SIRT1 Silent p.F148F 0.10 TCGA-HJ-7597-01 10 72164272 72164272 G - EIF4EBP2 Frame_Shift_Del p.T41Rfs*47 0.14 TCGA-HJ-7597-01 10 73581689 73581689 C T PSAP Missense_Mutation p.A285T 0.40 deleterious(0) possibly_damaging(0.889) TCGA-HJ-7597-01 10 75525232 75525233 - G SEC24C Frame_Shift_Ins p.E419Gfs*22 0.14 TCGA-HJ-7597-01 10 75842297 75842297 C - VCL Frame_Shift_Del p.P291Qfs*13 0.15 TCGA-HJ-7597-01 10 78669817 78669817 A G KCNMA1 Silent p.D1001D 0.18 TCGA-HJ-7597-01 10 81272626 81272626 C T EIF5AL1 Missense_Mutation p.P74L 0.21 deleterious(0.02) benign(0.278) TCGA-HJ-7597-01 10 81915622 81915622 C T ANXA11 Missense_Mutation p.G502D 0.22 deleterious(0) possibly_damaging(0.856) TCGA-HJ-7597-01 10 94297296 94297296 T - IDE Frame_Shift_Del p.K37Rfs*6 0.35 TCGA-HJ-7597-01 10 97779109 97779109 A - CC2D2B Intron 0.48 TCGA-HJ-7597-01 10 99968718 99968718 G T R3HCC1L Missense_Mutation p.D283Y 0.12 deleterious(0.02) probably_damaging(0.996) TCGA-HJ-7597-01 11 103349968 103349969 - A DYNC2H1 Frame_Shift_Ins p.N4313Kfs*? 0.22 TCGA-HJ-7597-01 11 105781166 105781166 T C GRIA4 Silent p.G388G 0.60 TCGA-HJ-7597-01 11 108032226 108032226 C T NPAT Missense_Mutation p.R1196Q 0.44 tolerated(0.38) benign(0.227) TCGA-HJ-7597-01 11 10825547 10825548 CT - EIF4G2 Frame_Shift_Del p.R200Sfs*4 0.16 TCGA-HJ-7597-01 11 1085825 1085825 T C MUC2 Missense_Mutation p.C916R 0.13 probably_damaging(1) TCGA-HJ-7597-01 11 118100600 118100601 AG - MPZL3 3'UTR 0.34 TCGA-HJ-7597-01 11 118516346 118516346 T C PHLDB1 Missense_Mutation p.C1132R 0.11 deleterious(0) possibly_damaging(0.707) TCGA-HJ-7597-01 11 119212402 119212402 G A MFRP Silent p.G532G 0.07 TCGA-HJ-7597-01 11 129788598 129788598 G A PRDM10 Missense_Mutation p.R688W 0.39 deleterious(0) probably_damaging(0.997) TCGA-HJ-7597-01 11 130750601 130750601 T C SNX19 Missense_Mutation p.K892E 0.39 tolerated(0.47) benign(0.013) TCGA-HJ-7597-01 11 134047223 134047223 C T NCAPD3 Missense_Mutation p.R971H 0.43 deleterious(0) probably_damaging(1) TCGA-HJ-7597-01 11 134118753 134118753 T - THYN1 Frame_Shift_Del p.N194Ifs*15 0.17 TCGA-HJ-7597-01 11 13435172 13435172 C T BTBD10 Missense_Mutation p.R238H 0.60 tolerated(0.17) benign(0.096) TCGA-HJ-7597-01 11 14891208 14891208 G A PDE3B 3'UTR 0.43 TCGA-HJ-7597-01 11 17531368 17531368 C T USH1C Silent p.P516P 0.47 TCGA-HJ-7597-01 11 19735450 19735450 C T NAV2 Missense_Mutation p.A70V 0.11 tolerated_low_confidence(0.38) benign(0.003) TCGA-HJ-7597-01 11 20515777 20515777 A - PRMT3 Frame_Shift_Del p.K489Nfs*11 0.08 TCGA-HJ-7597-01 11 22707287 22707287 T C GAS2 Silent p.T73T 0.15 TCGA-HJ-7597-01 11 30032940 30032940 C - KCNA4 Frame_Shift_Del p.G429Vfs*53 0.08 TCGA-HJ-7597-01 11 4674184 4674184 G A OR51E1 Missense_Mutation p.R143H 0.07 deleterious(0.03) possibly_damaging(0.781) TCGA-HJ-7597-01 11 47303960 47303960 G A MADD Missense_Mutation p.A500T 0.36 deleterious(0.02) benign(0.105) TCGA-HJ-7597-01 11 5345106 5345106 G A OR51B2 Missense_Mutation p.A141V 0.72 deleterious(0.01) benign(0.028) TCGA-HJ-7597-01 11 56230191 56230191 G A OR5M9 Silent p.A229A 0.67 TCGA-HJ-7597-01 11 5717765 5717765 A - TRIM22 Frame_Shift_Del p.K103Nfs*31 0.15 TCGA-HJ-7597-01 11 59211321 59211321 C T OR5A1 Missense_Mutation p.A227V 0.25 deleterious(0) possibly_damaging(0.901) TCGA-HJ-7597-01 11 60233509 60233509 G T MS4A1 Missense_Mutation p.S151I 0.21 deleterious(0.03) probably_damaging(0.938) TCGA-HJ-7597-01 11 62327077 62327077 A G EEF1G 3'UTR 0.58 TCGA-HJ-7597-01 11 62760982 62760982 G A SLC22A8 Silent p.T481T 0.45 TCGA-HJ-7597-01 11 64066960 64066960 G A KCNK4 Missense_Mutation p.G315D 0.26 tolerated(0.51) benign(0.039) TCGA-HJ-7597-01 11 64893016 64893016 G A MRPL49 Missense_Mutation p.V96I 0.50 tolerated(0.05) benign(0.349) TCGA-HJ-7597-01 11 65347416 65347416 G A EHBP1L1 Missense_Mutation p.V90M 0.43 tolerated(0.06) possibly_damaging(0.782) TCGA-HJ-7597-01 11 65397039 65397039 G A PCNXL3 Missense_Mutation p.R1350H 0.47 deleterious(0) possibly_damaging(0.468) TCGA-HJ-7597-01 11 65835515 65835515 C T SF3B2 Missense_Mutation p.T810M 0.11 deleterious(0.02) benign(0.194) TCGA-HJ-7597-01 11 66033663 66033664 - C KLC2 Frame_Shift_Ins p.Q570Pfs*5 0.36 TCGA-HJ-7597-01 11 66238782 66238782 G A PELI3 Silent p.S98S 0.43 TCGA-HJ-7597-01 11 6662451 6662451 G A DCHS1 Nonsense_Mutation p.R132* 0.58 TCGA-HJ-7597-01 11 75298881 75298881 T C MAP6 Silent p.V555V 0.12 TCGA-HJ-7597-01 11 77301362 77301362 C T AQP11 Silent p.L109L 0.08 TCGA-HJ-7597-01 11 78369475 78369475 G A TENM4 Silent p.N2646N 0.47 TCGA-HJ-7597-01 11 9861197 9861197 G A SBF2 Silent p.S1101S 0.60 TCGA-HJ-7597-01 11 988598 988598 A G AP2A2 Missense_Mutation p.Y393C 0.07 deleterious(0) probably_damaging(0.995) TCGA-HJ-7597-01 12 100452511 100452512 - A UHRF1BP1L Frame_Shift_Ins p.T849Nfs*6 0.21 TCGA-HJ-7597-01 12 102302024 102302024 G A DRAM1 Missense_Mutation p.V135M 0.25 tolerated(0.2) benign(0.041) TCGA-HJ-7597-01 12 104337021 104337021 A C HSP90B1 Missense_Mutation p.K605T 0.11 deleterious(0.02) probably_damaging(0.977) TCGA-HJ-7597-01 12 105514941 105514941 T C KIAA1033 Silent p.D208D 0.14 TCGA-HJ-7597-01 12 108926011 108926011 C T SART3 Missense_Mutation p.M552I 0.09 deleterious(0.01) benign(0.017) TCGA-HJ-7597-01 12 110475232 110475232 G A ANKRD13A Missense_Mutation p.R549H 0.30 tolerated(0.06) benign(0.002) TCGA-HJ-7597-01 12 12022435 12022435 C T ETV6 Missense_Mutation p.R181C 0.24 deleterious(0.01) probably_damaging(0.927) TCGA-HJ-7597-01 12 120741725 120741725 C T SIRT4 Missense_Mutation p.P121S 0.46 deleterious(0) probably_damaging(0.998) TCGA-HJ-7597-01 12 121458331 121458331 G A OASL 3'UTR 0.22 TCGA-HJ-7597-01 12 121881493 121881496 AAGT - KDM2B Frame_Shift_Del p.Y851Sfs*82 0.26 TCGA-HJ-7597-01 12 122613694 122613694 C T MLXIP Missense_Mutation p.T206M 0.27 tolerated(0.07) possibly_damaging(0.725) TCGA-HJ-7597-01 12 123497265 123497265 C T PITPNM2 Missense_Mutation p.V104M 0.07 deleterious(0.02) probably_damaging(0.999) TCGA-HJ-7597-01 12 123970232 123970232 C T RILPL1 Missense_Mutation p.E308K 0.27 deleterious(0.05) possibly_damaging(0.842) TCGA-HJ-7597-01 12 124413925 124413925 C T DNAH10 Missense_Mutation p.P4019L 0.29 possibly_damaging(0.613) TCGA-HJ-7597-01 12 124414289 124414289 A G DNAH10 Missense_Mutation p.K4081E 0.35 probably_damaging(0.985) TCGA-HJ-7597-01 12 124862900 124862900 T C NCOR2 Missense_Mutation p.K684E 0.27 unknown(0) TCGA-HJ-7597-01 12 124911228 124911228 T C NCOR2 Missense_Mutation p.Y423C 0.23 unknown(0) TCGA-HJ-7597-01 12 12491530 12491530 T C MANSC1 Intron 0.20 TCGA-HJ-7597-01 12 126138565 126138565 C - TMEM132B Frame_Shift_Del p.Q851Sfs*39 0.22 TCGA-HJ-7597-01 12 132510235 132510235 C T EP400 Nonsense_Mutation p.R1634* 0.28 TCGA-HJ-7597-01 12 132514266 132514266 C T EP400 Missense_Mutation p.P1801L 0.30 unknown(0) TCGA-HJ-7597-01 12 13256440 13256440 C T GSG1 Missense_Mutation p.D3N 0.21 tolerated_low_confidence(1) benign(0.001) TCGA-HJ-7597-01 12 14688687 14688687 C T PLBD1 Silent p.T250T 0.20 TCGA-HJ-7597-01 12 14825885 14825885 G A GUCY2C Silent p.D364D 0.26 TCGA-HJ-7597-01 12 21639508 21639508 C T RECQL Missense_Mutation p.V136I 0.50 deleterious(0) possibly_damaging(0.866) TCGA-HJ-7597-01 12 2659185 2659185 C T CACNA1C Silent p.C489C 0.29 TCGA-HJ-7597-01 12 27543174 27543174 T C ARNTL2 Splice_Site p.X307_splice 0.27 TCGA-HJ-7597-01 12 28116577 28116577 C T PTHLH Silent p.S76S 0.09 TCGA-HJ-7597-01 12 28603309 28603309 A C CCDC91 Missense_Mutation p.E294D 0.22 deleterious(0.01) possibly_damaging(0.76) TCGA-HJ-7597-01 12 32480566 32480566 G A BICD1 Missense_Mutation p.G393R 0.23 tolerated(0.26) benign(0.26) TCGA-HJ-7597-01 12 48379540 48379540 G A COL2A1 Missense_Mutation p.P551S 0.13 benign(0.285) TCGA-HJ-7597-01 12 49318420 49318420 T C FKBP11 Silent p.V69V 0.27 TCGA-HJ-7597-01 12 49434136 49434136 G - KMT2D Frame_Shift_Del p.Q2473Sfs*12 0.16 TCGA-HJ-7597-01 12 50196893 50196893 C T NCKAP5L Missense_Mutation p.R60H 0.22 deleterious(0) probably_damaging(0.999) TCGA-HJ-7597-01 12 5154231 5154231 G A KCNA5 Silent p.P306P 0.24 TCGA-HJ-7597-01 12 52647383 52647383 A G KRT7 3'Flank 0.24 TCGA-HJ-7597-01 12 52754649 52754649 G C KRT85 Silent p.V504V 0.15 TCGA-HJ-7597-01 12 53170983 53170983 G A KRT76 Silent p.S31S 0.27 TCGA-HJ-7597-01 12 53292586 53292586 A G KRT8 Missense_Mutation p.L388P 0.11 deleterious(0.03) benign(0.22) TCGA-HJ-7597-01 12 53455663 53455665 AGG - TENC1 In_Frame_Del p.G1182del 0.21 TCGA-HJ-7597-01 12 55759783 55759783 C A OR6C75 Missense_Mutation p.Q297K 0.09 tolerated_low_confidence(0.11) probably_damaging(0.952) TCGA-HJ-7597-01 12 56216886 56216886 A G DNAJC14 Silent p.T534T 0.45 TCGA-HJ-7597-01 12 57556275 57556275 G A LRP1 Missense_Mutation p.R793Q 0.25 possibly_damaging(0.852) TCGA-HJ-7597-01 12 57919936 57919936 C - MBD6 Frame_Shift_Del p.Q397Nfs*90 0.24 TCGA-HJ-7597-01 12 57963882 57963882 G A KIF5A Silent p.A410A 0.39 TCGA-HJ-7597-01 12 58220861 58220861 A C CTDSP2 Missense_Mutation p.L91R 0.44 deleterious(0.02) possibly_damaging(0.849) TCGA-HJ-7597-01 12 62104140 62104140 G A FAM19A2 3'UTR 0.29 TCGA-HJ-7597-01 12 665815 665815 C T B4GALNT3 Silent p.R721R 0.27 TCGA-HJ-7597-01 12 6933561 6933561 G A GPR162 Missense_Mutation p.R166H 0.13 tolerated(0.82) benign(0.068) TCGA-HJ-7597-01 12 6979581 6979581 C T TPI1 3'UTR 0.20 TCGA-HJ-7597-01 12 70091427 70091427 C A BEST3 Missense_Mutation p.R51I 0.28 deleterious(0) probably_damaging(0.999) TCGA-HJ-7597-01 12 91357958 91357958 C T EPYC Missense_Mutation p.R315H 0.25 deleterious(0.03) probably_damaging(0.972) TCGA-HJ-7597-01 12 9243798 9243798 C T A2M Missense_Mutation p.R823Q 0.41 tolerated(0.29) benign(0.015) TCGA-HJ-7597-01 12 98926791 98926791 T C TMPO Silent p.P252P 0.28 TCGA-HJ-7597-01 13 103266508 103266509 TA - TPP2 Frame_Shift_Del p.Y118* 0.16 TCGA-HJ-7597-01 13 103459886 103459886 G A BIVM-ERCC5 Missense_Mutation p.R62H 0.27 tolerated_low_confidence(0.59) probably_damaging(0.923) TCGA-HJ-7597-01 13 108862197 108862197 C A LIG4 Nonsense_Mutation p.G474* 0.24 TCGA-HJ-7597-01 13 112722294 112722294 C T SOX1 Missense_Mutation p.R108C 0.22 deleterious(0) probably_damaging(0.993) TCGA-HJ-7597-01 13 114535425 114535425 G A GAS6 Silent p.P330P 0.17 TCGA-HJ-7597-01 13 25060357 25060357 C A PARP4 Missense_Mutation p.R434M 0.11 deleterious(0) probably_damaging(0.928) TCGA-HJ-7597-01 13 28877424 28877424 G A FLT1 Silent p.H1299H 0.28 TCGA-HJ-7597-01 13 39616313 39616313 A - NHLRC3 Frame_Shift_Del p.G155Afs*4 0.20 TCGA-HJ-7597-01 13 41367407 41367407 G - SLC25A15 Frame_Shift_Del p.A17Lfs*9 0.13 TCGA-HJ-7597-01 13 41705366 41705366 T C KBTBD6 Missense_Mutation p.M428V 0.08 tolerated(0.32) benign(0.142) TCGA-HJ-7597-01 13 45554925 45554925 A - NUFIP1 Frame_Shift_Del p.C176Vfs*27 0.19 TCGA-HJ-7597-01 13 45857736 45857736 C T GTF2F2 3'UTR 0.30 TCGA-HJ-7597-01 13 49089783 49089783 C T RCBTB2 Missense_Mutation p.R46H 0.21 tolerated(0.42) benign(0.003) TCGA-HJ-7597-01 13 76397791 76397791 G A LMO7 Missense_Mutation p.A678T 0.23 tolerated(0.67) benign(0.002) TCGA-HJ-7597-01 13 77581488 77581488 T - FBXL3 Frame_Shift_Del p.N360Ifs*7 0.25 TCGA-HJ-7597-01 14 103372037 103372038 TG - TRAF3 Frame_Shift_Del p.V542Sfs*8 0.30 TCGA-HJ-7597-01 14 103430911 103430911 G A CDC42BPB Missense_Mutation p.A885V 0.27 deleterious(0) possibly_damaging(0.907) TCGA-HJ-7597-01 14 105642869 105642869 A G NUDT14 Splice_Site p.X143_splice 0.13 TCGA-HJ-7597-01 14 105945820 105945820 C T CRIP2 Silent p.F257F 0.23 TCGA-HJ-7597-01 14 20978638 20978638 T C RNASE10 Missense_Mutation p.L3P 0.06 tolerated_low_confidence(0.11) benign(0.041) TCGA-HJ-7597-01 14 21542131 21542131 C T ARHGEF40 Missense_Mutation p.P81L 0.22 deleterious(0) probably_damaging(0.992) TCGA-HJ-7597-01 14 21544719 21544719 T C ARHGEF40 Intron 0.28 TCGA-HJ-7597-01 14 23876440 23876440 C T MYH6 5'UTR 0.08 TCGA-HJ-7597-01 14 23896463 23896464 AC - MYH7 Frame_Shift_Del p.A649Sfs*27 0.23 TCGA-HJ-7597-01 14 24538654 24538654 C T LRRC16B 3'UTR 0.18 TCGA-HJ-7597-01 14 24737783 24737783 G A RABGGTA Nonsense_Mutation p.Q315* 0.06 TCGA-HJ-7597-01 14 24760357 24760357 G A DHRS1 Missense_Mutation p.R265W 0.24 tolerated(0.11) possibly_damaging(0.586) TCGA-HJ-7597-01 14 24911885 24911885 C A SDR39U1 Intron 0.14 TCGA-HJ-7597-01 14 31071299 31071302 CAGA - G2E3 Frame_Shift_Del p.R325Sfs*11 0.21 TCGA-HJ-7597-01 14 32560445 32560445 A - ARHGAP5 Frame_Shift_Del p.K192Nfs*3 0.32 TCGA-HJ-7597-01 14 35272177 35272177 C T BAZ1A Silent p.T248T 0.34 TCGA-HJ-7597-01 14 47120831 47120831 C T RPL10L Missense_Mutation p.G37S 0.32 deleterious(0) probably_damaging(0.962) TCGA-HJ-7597-01 14 52433450 52433450 G A GNG2 3'UTR 0.22 TCGA-HJ-7597-01 14 61446529 61446529 C T TRMT5 Silent p.S29S 0.11 TCGA-HJ-7597-01 14 62551036 62551036 G A SYT16 Silent p.T519T 0.25 TCGA-HJ-7597-01 14 64688370 64688370 C T SYNE2 Missense_Mutation p.T6713I 0.15 possibly_damaging(0.462) TCGA-HJ-7597-01 14 64727249 64727249 G A ESR2 Silent p.T290T 0.31 TCGA-HJ-7597-01 14 68157059 68157059 G A RDH11 Silent p.L178L 0.12 TCGA-HJ-7597-01 14 69522046 69522046 G A DCAF5 Missense_Mutation p.R453C 0.22 deleterious(0) probably_damaging(0.993) TCGA-HJ-7597-01 14 69704633 69704633 C T EXD2 Missense_Mutation p.A545V 0.16 tolerated(0.11) possibly_damaging(0.614) TCGA-HJ-7597-01 14 69795188 69795188 G A GALNT16 Missense_Mutation p.R197H 0.16 deleterious(0) probably_damaging(0.982) TCGA-HJ-7597-01 14 71500186 71500186 T - PCNX Frame_Shift_Del p.C1202Vfs*4 0.23 TCGA-HJ-7597-01 14 73717688 73717688 C T PAPLN Missense_Mutation p.T180M 0.13 deleterious(0.01) possibly_damaging(0.888) TCGA-HJ-7597-01 14 74189532 74189532 C T ELMSAN1 Missense_Mutation p.A865T 0.12 deleterious(0) probably_damaging(0.998) TCGA-HJ-7597-01 14 77737252 77737252 C T NGB Missense_Mutation p.R10Q 0.32 deleterious(0.01) possibly_damaging(0.594) TCGA-HJ-7597-01 14 81610125 81610125 G A TSHR Missense_Mutation p.E575K 0.32 deleterious(0.04) benign(0.045) TCGA-HJ-7597-01 14 92909751 92909751 G A SLC24A4 Missense_Mutation p.R197H 0.29 tolerated(0.55) benign(0.003) TCGA-HJ-7597-01 14 93717896 93717896 C T BTBD7 Missense_Mutation p.V619M 0.38 tolerated(0.07) benign(0.062) TCGA-HJ-7597-01 14 95562462 95562462 G A DICER1 Missense_Mutation p.R1599W 0.35 tolerated(0.06) benign(0) TCGA-HJ-7597-01 14 99641154 99641154 G A BCL11B Silent p.P673P 0.21 TCGA-HJ-7597-01 15 101098956 101098958 CTC - RNU6-181P 3'Flank 0.12 TCGA-HJ-7597-01 15 25299361 25299361 C T SNORD116-2 RNA 0.13 TCGA-HJ-7597-01 15 25958953 25958953 G A ATP10A Missense_Mutation p.H738Y 0.24 tolerated(0.12) benign(0.067) TCGA-HJ-7597-01 15 33835850 33835850 G A RYR3 Missense_Mutation p.R225H 0.18 probably_damaging(0.964) TCGA-HJ-7597-01 15 34355212 34355212 C T CHRM5 Silent p.L98L 0.48 TCGA-HJ-7597-01 15 34649701 34649701 G A NUTM1 3'UTR 0.20 TCGA-HJ-7597-01 15 35166929 35166929 C T AQR Missense_Mutation p.R1125H 0.22 deleterious(0) probably_damaging(0.988) TCGA-HJ-7597-01 15 40384006 40384006 G A BMF Silent p.N179N 0.50 TCGA-HJ-7597-01 15 40662581 40662581 G A DISP2 3'UTR 0.28 TCGA-HJ-7597-01 15 40750958 40750958 C - BAHD1 Frame_Shift_Del p.S101Afs*107 0.26 TCGA-HJ-7597-01 15 40915354 40915354 C T CASC5 Silent p.Y990Y 0.44 TCGA-HJ-7597-01 15 42034971 42034971 T - MGA Frame_Shift_Del p.L1606* 0.10 TCGA-HJ-7597-01 15 42476844 42476844 G A VPS39 Missense_Mutation p.P197S 0.35 deleterious(0.01) probably_damaging(0.99) TCGA-HJ-7597-01 15 43568714 43568714 T C TGM7 Missense_Mutation p.N691S 0.16 tolerated(0.37) benign(0.026) TCGA-HJ-7597-01 15 50535106 50535106 C T HDC Missense_Mutation p.R447H 0.16 deleterious(0) probably_damaging(1) TCGA-HJ-7597-01 15 52553183 52553183 C T MYO5C Missense_Mutation p.A397T 0.11 deleterious(0.03) probably_damaging(0.994) TCGA-HJ-7597-01 15 60741590 60741590 T C NARG2 Missense_Mutation p.N526D 0.30 tolerated(0.62) benign(0) TCGA-HJ-7597-01 15 62165447 62165447 G A VPS13C Nonsense_Mutation p.R3526* 0.24 TCGA-HJ-7597-01 15 63944642 63944642 T C HERC1 Silent p.S3463S 0.19 TCGA-HJ-7597-01 15 64967943 64967943 C T ZNF609 Missense_Mutation p.R964C 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-HJ-7597-01 15 65684597 65684597 C T IGDCC4 Missense_Mutation p.R666Q 0.13 tolerated(0.06) possibly_damaging(0.586) TCGA-HJ-7597-01 15 67938762 67938762 T - MAP2K5 Frame_Shift_Del p.F232Lfs*2 0.26 TCGA-HJ-7597-01 15 72691047 72691047 G A TMEM202 Silent p.Q45Q 0.11 TCGA-HJ-7597-01 15 74180775 74180775 G A TBC1D21 Missense_Mutation p.C300Y 0.08 deleterious(0.01) possibly_damaging(0.781) TCGA-HJ-7597-01 15 74481567 74481567 C T STRA6 Missense_Mutation p.A366T 0.23 deleterious(0.01) probably_damaging(0.963) TCGA-HJ-7597-01 15 74636145 74636145 C T CYP11A1 Missense_Mutation p.V272M 0.31 tolerated(0.23) benign(0.107) TCGA-HJ-7597-01 15 75094810 75094810 C T CSK Nonsense_Mutation p.R437* 0.13 TCGA-HJ-7597-01 15 79069818 79069818 C T ADAMTS7 Missense_Mutation p.G479R 0.15 deleterious(0) probably_damaging(0.931) TCGA-HJ-7597-01 15 79083560 79083560 A G ADAMTS7 Silent p.A275A 0.10 TCGA-HJ-7597-01 15 79749949 79749949 G A KIAA1024 Missense_Mutation p.C487Y 0.33 tolerated(1) benign(0.003) TCGA-HJ-7597-01 15 80800575 80800575 G A ARNT2 Missense_Mutation p.R234Q 0.38 deleterious(0) benign(0.035) TCGA-HJ-7597-01 15 81271633 81271633 T - MESDC2 Frame_Shift_Del p.K211Rfs*6 0.33 TCGA-HJ-7597-01 15 83332368 83332368 G A AP3B2 Missense_Mutation p.P795L 0.25 deleterious(0.04) possibly_damaging(0.713) TCGA-HJ-7597-01 15 83478511 83478511 C T WHAMM Silent p.G11G 0.21 TCGA-HJ-7597-01 15 85147391 85147391 G A ZSCAN2 Missense_Mutation p.G78D 0.41 tolerated(0.06) possibly_damaging(0.597) TCGA-HJ-7597-01 15 89422314 89422314 A G HAPLN3 Missense_Mutation p.M227T 0.26 tolerated(1) benign(0.002) TCGA-HJ-7597-01 15 90023598 90023598 G A RHCG Silent p.G188G 0.26 TCGA-HJ-7597-01 15 91027453 91027453 C T IQGAP1 Missense_Mutation p.R1264W 0.23 deleterious(0.01) probably_damaging(0.974) TCGA-HJ-7597-01 15 91462927 91462927 G A MAN2A2 Silent p.T1121T 0.30 TCGA-HJ-7597-01 15 93489371 93489371 A G CHD2 Silent p.G434G 0.24 TCGA-HJ-7597-01 15 96877812 96877812 C T NR2F2 Missense_Mutation p.A317V 0.10 deleterious(0.02) possibly_damaging(0.461) TCGA-HJ-7597-01 16 12145844 12145844 G A SNX29 Missense_Mutation p.D297N 0.20 deleterious_low_confidence(0.02) probably_damaging(0.948) TCGA-HJ-7597-01 16 1262003 1262003 G A CACNA1H Missense_Mutation p.V1542I 0.23 deleterious(0.03) probably_damaging(0.997) TCGA-HJ-7597-01 16 12662399 12662399 G A SNX29 Silent p.R785R 0.33 TCGA-HJ-7597-01 16 1537330 1537330 C A PTX4 Missense_Mutation p.Q256H 0.21 deleterious(0.01) benign(0.008) TCGA-HJ-7597-01 16 1810417 1810417 C A MAPK8IP3 Silent p.A446A 0.17 TCGA-HJ-7597-01 16 2049537 2049537 C T ZNF598 Silent p.A671A 0.27 TCGA-HJ-7597-01 16 20994156 20994156 C T DNAH3 Silent p.S2582S 0.29 TCGA-HJ-7597-01 16 21666791 21666791 C T METTL9 3'UTR 0.36 TCGA-HJ-7597-01 16 21698928 21698928 G A OTOA Silent p.E198E 0.23 TCGA-HJ-7597-01 16 23080178 23080178 C T USP31 Missense_Mutation p.G1083D 0.27 tolerated_low_confidence(0.22) benign(0.043) TCGA-HJ-7597-01 16 24806025 24806025 G T TNRC6A Missense_Mutation p.K1171N 0.21 tolerated(0.05) probably_damaging(0.953) TCGA-HJ-7597-01 16 25228757 25228757 G A AQP8 Missense_Mutation p.G84E 0.30 deleterious(0) probably_damaging(0.994) TCGA-HJ-7597-01 16 27473769 27473769 C T GTF3C1 Missense_Mutation p.R1988H 0.21 deleterious(0) probably_damaging(0.999) TCGA-HJ-7597-01 16 29816226 29816226 A - KIF22 Frame_Shift_Del p.I592Yfs*5 0.26 TCGA-HJ-7597-01 16 29818053 29818054 - C MAZ Frame_Shift_Ins p.F14Lfs*34 0.42 TCGA-HJ-7597-01 16 29819074 29819074 G A MAZ Missense_Mutation p.S323N 0.26 tolerated(0.14) benign(0.254) TCGA-HJ-7597-01 16 29853161 29853161 G T MVP Missense_Mutation p.R479L 0.08 deleterious(0) probably_damaging(0.982) TCGA-HJ-7597-01 16 31504963 31504963 C T C16orf58 Missense_Mutation p.D307N 0.16 tolerated(0.39) benign(0.002) TCGA-HJ-7597-01 16 3817721 3817721 T - CREBBP Frame_Shift_Del p.I1084Sfs*15 0.22 TCGA-HJ-7597-01 16 3843416 3843416 G A CREBBP Missense_Mutation p.T396M 0.21 probably_damaging(0.997) TCGA-HJ-7597-01 16 424092 424092 C T TMEM8A Silent p.T605T 0.22 TCGA-HJ-7597-01 16 4559660 4559660 G A HMOX2 Missense_Mutation p.R285Q 0.22 tolerated(1) benign(0.001) TCGA-HJ-7597-01 16 50338359 50338359 G A ADCY7 Missense_Mutation p.R486Q 0.11 tolerated(0.21) probably_damaging(1) TCGA-HJ-7597-01 16 53513902 53513905 AAGT - RBL2 Splice_Site p.X961_splice 0.33 TCGA-HJ-7597-01 16 55362691 55362691 G T IRX6 Missense_Mutation p.E267D 0.26 tolerated(0.41) probably_damaging(0.937) TCGA-HJ-7597-01 16 56782290 56782290 G A NUP93 Missense_Mutation p.R44H 0.32 tolerated(0.67) benign(0.003) TCGA-HJ-7597-01 16 56903668 56903668 C T SLC12A3 Missense_Mutation p.S178L 0.24 deleterious(0) possibly_damaging(0.756) TCGA-HJ-7597-01 16 615240 615240 C T C16orf11 Missense_Mutation p.A550V 0.25 tolerated_low_confidence(0.05) benign(0.078) TCGA-HJ-7597-01 16 668205 668205 C T RAB40C Missense_Mutation p.T70M 0.32 deleterious(0) possibly_damaging(0.655) TCGA-HJ-7597-01 16 66946576 66946576 C T CDH16 Missense_Mutation p.A425T 0.27 tolerated(0.43) benign(0.008) TCGA-HJ-7597-01 16 67029732 67029732 G A CES4A Missense_Mutation p.G87E 0.08 deleterious(0.02) benign(0.117) TCGA-HJ-7597-01 16 67671654 67671655 - A CTCF Frame_Shift_Ins p.E691Rfs*5 0.17 TCGA-HJ-7597-01 16 67683831 67683831 A G RLTPR Missense_Mutation p.Q681R 0.22 deleterious(0.03) benign(0.005) TCGA-HJ-7597-01 16 68844111 68844111 C T CDH1 Silent p.H233H 0.25 TCGA-HJ-7597-01 16 69368569 69368569 A G RP11-343C2.12 Missense_Mutation p.L69P 0.15 deleterious(0.05) possibly_damaging(0.781) TCGA-HJ-7597-01 16 69400708 69400708 A G TERF2 Splice_Site p.X405_splice 0.16 TCGA-HJ-7597-01 16 69726958 69726958 A T NFAT5 Missense_Mutation p.N1077I 0.17 benign(0.177) TCGA-HJ-7597-01 16 784277 784277 C T NARFL Silent p.P215P 0.25 TCGA-HJ-7597-01 16 81390507 81390507 A G GAN Missense_Mutation p.I251V 0.14 tolerated(0.46) benign(0.024) TCGA-HJ-7597-01 16 81712153 81712153 C T CMIP Silent p.P436P 0.30 TCGA-HJ-7597-01 16 84050849 84050849 G A SLC38A8 Silent p.D283D 0.19 TCGA-HJ-7597-01 16 857626 857626 G A PRR25 Missense_Mutation p.R208H 0.28 deleterious_low_confidence(0) probably_damaging(0.923) TCGA-HJ-7597-01 16 89337294 89337294 G A ANKRD11 Silent p.R2579R 0.06 TCGA-HJ-7597-01 16 9858738 9858738 G A GRIN2A Missense_Mutation p.T888M 0.36 deleterious(0) possibly_damaging(0.863) TCGA-HJ-7597-01 17 10429940 10429940 C T MYH2 Missense_Mutation p.R1388H 0.38 deleterious(0.01) possibly_damaging(0.73) TCGA-HJ-7597-01 17 16024467 16024467 C T NCOR1 Missense_Mutation p.R584Q 0.37 probably_damaging(0.992) TCGA-HJ-7597-01 17 17701303 17701303 A G RAI1 Missense_Mutation p.S1681G 0.08 tolerated(0.13) benign(0.045) TCGA-HJ-7597-01 17 17722871 17722871 G A SREBF1 Missense_Mutation p.S261L 0.30 tolerated(0.14) benign(0.043) TCGA-HJ-7597-01 17 18023440 18023440 C T MYO15A Silent p.G442G 0.25 TCGA-HJ-7597-01 17 18673378 18673378 C T FBXW10 Silent p.S662S 0.27 TCGA-HJ-7597-01 17 19186802 19186802 C T EPN2 Missense_Mutation p.R124C 0.42 deleterious(0) probably_damaging(1) TCGA-HJ-7597-01 17 2237832 2237832 G A TSR1 Silent p.P305P 0.43 TCGA-HJ-7597-01 17 25630636 25630636 T A WSB1 Silent p.R151R 0.30 TCGA-HJ-7597-01 17 27067956 27067956 C A NEK8 Missense_Mutation p.P562H 0.09 tolerated(0.15) benign(0.001) TCGA-HJ-7597-01 17 28536212 28536212 C T SLC6A4 Missense_Mutation p.A500T 0.28 deleterious(0.02) possibly_damaging(0.698) TCGA-HJ-7597-01 17 29233220 29233220 C T TEFM 5'UTR 0.27 TCGA-HJ-7597-01 17 29645465 29645465 C T EVI2A Nonsense_Mutation p.W212* 0.32 TCGA-HJ-7597-01 17 34068069 34068069 A G RASL10B Silent p.S119S 0.08 TCGA-HJ-7597-01 17 36489178 36489178 C T GPR179 Missense_Mutation p.A665T 0.22 tolerated(0.4) benign(0.059) TCGA-HJ-7597-01 17 37646922 37646922 C - CDK12 Frame_Shift_Del p.P683Qfs*70 0.27 TCGA-HJ-7597-01 17 38855782 38855782 G A KRT24 Silent p.N425N 0.25 TCGA-HJ-7597-01 17 39092491 39092491 T C KRT23 Missense_Mutation p.Y122C 0.27 deleterious(0) probably_damaging(0.989) TCGA-HJ-7597-01 17 39092616 39092616 G A KRT23 Silent p.N80N 0.34 TCGA-HJ-7597-01 17 39622145 39622145 C T KRT32 Silent p.E196E 0.07 TCGA-HJ-7597-01 17 39740077 39740077 G A KRT14 Missense_Mutation p.R288C 0.25 deleterious(0.03) possibly_damaging(0.735) TCGA-HJ-7597-01 17 40263776 40263777 CA - DHX58 Frame_Shift_Del p.V45Gfs*20 0.24 TCGA-HJ-7597-01 17 40705214 40705214 C T HSD17B1 Missense_Mutation p.P57L 0.13 deleterious(0.02) benign(0.042) TCGA-HJ-7597-01 17 40714440 40714440 C A COASY Missense_Mutation p.P4Q 0.18 tolerated_low_confidence(0.37) possibly_damaging(0.904) TCGA-HJ-7597-01 17 40997145 40997145 C A AOC2 Missense_Mutation p.L168M 0.28 tolerated(0.06) benign(0.356) TCGA-HJ-7597-01 17 41606543 41606543 C T ETV4 Missense_Mutation p.R397H 0.32 deleterious(0) probably_damaging(0.999) TCGA-HJ-7597-01 17 42475981 42475981 C T GPATCH8 Missense_Mutation p.R1155Q 0.28 tolerated(0.13) unknown(0) TCGA-HJ-7597-01 17 43475388 43475388 T C ARHGAP27 Missense_Mutation p.Y249C 0.19 deleterious(0) probably_damaging(0.997) TCGA-HJ-7597-01 17 43907538 43907538 G A CRHR1 Silent p.V200V 0.25 TCGA-HJ-7597-01 17 43912090 43912090 G A CRHR1 Missense_Mutation p.R432H 0.29 deleterious(0) probably_damaging(0.943) TCGA-HJ-7597-01 17 4453567 4453567 G A MYBBP1A Missense_Mutation p.R369W 0.45 deleterious(0) probably_damaging(0.993) TCGA-HJ-7597-01 17 45901531 45901531 G A MRPL10 3'UTR 0.33 TCGA-HJ-7597-01 17 46627995 46627995 C T HOXB3 Missense_Mutation p.V333I 0.27 tolerated(0.42) benign(0.001) TCGA-HJ-7597-01 17 47788852 47788852 G T FAM117A Missense_Mutation p.P376Q 0.23 deleterious(0) probably_damaging(1) TCGA-HJ-7597-01 17 4936399 4936399 C T SLC52A1 Silent p.L400L 0.31 TCGA-HJ-7597-01 17 51900882 51900882 G A KIF2B Missense_Mutation p.R163H 0.29 deleterious(0.03) probably_damaging(0.999) TCGA-HJ-7597-01 17 5322735 5322737 AAG - NUP88 In_Frame_Del p.F78del 0.51 TCGA-HJ-7597-01 17 5442750 5442750 T C NLRP1 Missense_Mutation p.K952R 0.09 tolerated(0.15) benign(0.002) TCGA-HJ-7597-01 17 56435161 56435161 C - RNF43 Frame_Shift_Del p.G659Vfs*41 0.25 TCGA-HJ-7597-01 17 56439936 56439936 C T RNF43 Missense_Mutation p.R219H 0.32 deleterious(0) probably_damaging(0.999) TCGA-HJ-7597-01 17 6023723 6023723 C T WSCD1 Silent p.Y490Y 0.40 TCGA-HJ-7597-01 17 60344584 60344587 GAGA - TBC1D3P2 RNA 0.15 TCGA-HJ-7597-01 17 62080316 62080316 G A C17orf72 3'Flank 0.18 TCGA-HJ-7597-01 17 62528036 62528036 G A CEP95 Missense_Mutation p.R523H 0.30 tolerated(0.72) benign(0) TCGA-HJ-7597-01 17 64881181 64881181 C T CACNG5 Missense_Mutation p.R218C 0.18 deleterious(0) possibly_damaging(0.816) TCGA-HJ-7597-01 17 67298996 67298996 C T ABCA5 Missense_Mutation p.G328R 0.31 deleterious(0.03) probably_damaging(0.998) TCGA-HJ-7597-01 17 6978442 6978442 G A CLEC10A Silent p.D294D 0.39 TCGA-HJ-7597-01 17 71228437 71228437 C - FAM104A Frame_Shift_Del p.R4Afs*64 0.31 TCGA-HJ-7597-01 17 72301522 72301522 C T DNAI2 Silent p.G384G 0.25 TCGA-HJ-7597-01 17 73482483 73482483 C T KIAA0195 Nonsense_Mutation p.R129* 0.30 TCGA-HJ-7597-01 17 73888549 73888549 G A TRIM65 Silent p.S181S 0.21 TCGA-HJ-7597-01 17 73910251 73910251 G A FBF1 Silent p.T966T 0.38 TCGA-HJ-7597-01 17 73915794 73915794 G A FBF1 Missense_Mutation p.A683V 0.25 tolerated(0.23) benign(0.008) TCGA-HJ-7597-01 17 74018596 74018596 G A EVPL Silent p.Y168Y 0.33 TCGA-HJ-7597-01 17 74382149 74382149 C A SPHK1 Missense_Mutation p.Q118K 0.26 tolerated(0.07) benign(0.002) TCGA-HJ-7597-01 17 7578475 7578475 G - TP53 Frame_Shift_Del p.P152Rfs*18 0.33 TCGA-HJ-7597-01 17 76075622 76075622 G T TNRC6C Missense_Mutation p.Q1116H 0.29 deleterious(0) probably_damaging(0.993) TCGA-HJ-7597-01 17 76212053 76212053 G A BIRC5 Silent p.P76P 0.34 TCGA-HJ-7597-01 17 77081777 77081779 GGA - ENGASE In_Frame_Del p.E595del 0.16 TCGA-HJ-7597-01 17 7753244 7753244 C - KDM6B Frame_Shift_Del p.P1184Lfs*31 0.30 TCGA-HJ-7597-01 17 77709045 77709045 G A ENPP7 Silent p.T201T 0.13 TCGA-HJ-7597-01 17 78087092 78087092 C A GAA Missense_Mutation p.L706I 0.25 deleterious(0.03) probably_damaging(0.967) TCGA-HJ-7597-01 17 78363631 78363631 T C RNF213 Silent p.L5067L 0.21 TCGA-HJ-7597-01 17 79648877 79648877 A G ARL16 Missense_Mutation p.M152T 0.21 deleterious(0.02) benign(0.245) TCGA-HJ-7597-01 17 80400297 80400298 - G HEXDC Frame_Shift_Ins p.A532Gfs*31 0.31 TCGA-HJ-7597-01 17 8380246 8380246 C T MYH10 Missense_Mutation p.E1943K 0.39 possibly_damaging(0.551) TCGA-HJ-7597-01 18 21898587 21898587 C T OSBPL1A Missense_Mutation p.R237Q 0.09 deleterious(0.02) benign(0.354) TCGA-HJ-7597-01 18 34408646 34408646 C A TPGS2 Nonsense_Mutation p.E29* 0.10 TCGA-HJ-7597-01 18 3457998 3457998 A G TGIF1 3'UTR 0.36 TCGA-HJ-7597-01 18 43666116 43666116 G A ATP5A1 Silent p.G464G 0.25 TCGA-HJ-7597-01 18 44554717 44554717 G A TCEB3C Silent p.G499G 0.15 TCGA-HJ-7597-01 18 47800666 47800666 G A MBD1 Missense_Mutation p.R346W 0.20 deleterious(0) probably_damaging(0.998) TCGA-HJ-7597-01 18 51888230 51888230 T A C18orf54 Missense_Mutation p.N167K 0.15 tolerated(0.18) probably_damaging(0.969) TCGA-HJ-7597-01 18 7023203 7023203 G A LAMA1 Silent p.D887D 0.30 TCGA-HJ-7597-01 18 71740947 71740947 C T FBXO15 Missense_Mutation p.V428I 0.26 tolerated(0.24) benign(0.009) TCGA-HJ-7597-01 18 732849 732849 G T YES1 Silent p.R470R 0.31 TCGA-HJ-7597-01 18 77246762 77246762 G A NFATC1 Silent p.P856P 0.24 TCGA-HJ-7597-01 18 8813106 8813106 C T SOGA2 Missense_Mutation p.R912C 0.20 deleterious(0) probably_damaging(0.979) TCGA-HJ-7597-01 19 1003296 1003296 C T GRIN3B Silent p.P198P 0.19 TCGA-HJ-7597-01 19 1036231 1036231 G A CNN2 Missense_Mutation p.V165I 0.39 tolerated(0.59) benign(0.009) TCGA-HJ-7597-01 19 10610266 10610266 G A KEAP1 Silent p.G148G 0.17 TCGA-HJ-7597-01 19 11446214 11446214 G A RAB3D Silent p.N127N 0.45 TCGA-HJ-7597-01 19 11552108 11552108 G A PRKCSH Missense_Mutation p.R135H 0.05 deleterious(0.01) possibly_damaging(0.807) TCGA-HJ-7597-01 19 11978875 11978875 T C ZNF439 Missense_Mutation p.C331R 0.37 deleterious(0) possibly_damaging(0.82) TCGA-HJ-7597-01 19 12864133 12864133 A G BEST2 Missense_Mutation p.Q71R 0.22 tolerated(1) benign(0.004) TCGA-HJ-7597-01 19 12969483 12969483 G A MAST1 Silent p.P432P 0.31 TCGA-HJ-7597-01 19 13007752 13007752 G A GCDH Missense_Mutation p.R294Q 0.37 deleterious_low_confidence(0) probably_damaging(1) TCGA-HJ-7597-01 19 13988458 13988458 C T NANOS3 Silent p.G132G 0.21 TCGA-HJ-7597-01 19 1486876 1486876 G A PCSK4 Silent p.S348S 0.53 TCGA-HJ-7597-01 19 15083604 15083604 C T SLC1A6 Missense_Mutation p.R40H 0.34 tolerated(0.18) benign(0.203) TCGA-HJ-7597-01 19 15224598 15224598 G A SYDE1 Missense_Mutation p.V678M 0.07 deleterious(0) probably_damaging(0.999) TCGA-HJ-7597-01 19 15342858 15342858 G A EPHX3 Silent p.C55C 0.44 TCGA-HJ-7597-01 19 15354055 15354055 G A BRD4 Missense_Mutation p.T942M 0.22 possibly_damaging(0.791) TCGA-HJ-7597-01 19 15651270 15651270 T C CYP4F22 Silent p.S227S 0.12 TCGA-HJ-7597-01 19 16192753 16192753 C T TPM4 Missense_Mutation p.R91C 0.24 deleterious(0) probably_damaging(0.961) TCGA-HJ-7597-01 19 17322818 17322818 C - MYO9B 3'UTR 0.22 TCGA-HJ-7597-01 19 17330519 17330519 C T USE1 Missense_Mutation p.T226M 0.27 tolerated(0.07) possibly_damaging(0.623) TCGA-HJ-7597-01 19 17369181 17369181 C T USHBP1 Missense_Mutation p.E354K 0.25 deleterious(0.01) possibly_damaging(0.453) TCGA-HJ-7597-01 19 17643096 17643096 C T FAM129C Nonsense_Mutation p.R102* 0.24 TCGA-HJ-7597-01 19 18054453 18054455 AAG - CCDC124 In_Frame_Del p.K202del 0.15 TCGA-HJ-7597-01 19 18726894 18726894 C T TMEM59L Missense_Mutation p.T173I 0.26 deleterious(0) probably_damaging(1) TCGA-HJ-7597-01 19 18779982 18779982 T C KLHL26 Missense_Mutation p.L592P 0.09 tolerated(0.08) possibly_damaging(0.794) TCGA-HJ-7597-01 19 19764812 19764812 G A ATP13A1 Missense_Mutation p.A652V 0.25 deleterious(0.01) benign(0.142) TCGA-HJ-7597-01 19 2046391 2046391 G A MKNK2 Silent p.T72T 0.25 TCGA-HJ-7597-01 19 21117754 21117754 G T ZNF85 Splice_Site p.X44_splice 0.25 TCGA-HJ-7597-01 19 21933815 21933815 C T ZNF100 Intron 0.19 TCGA-HJ-7597-01 19 2338759 2338759 G - SPPL2B RNA 0.21 TCGA-HJ-7597-01 19 24310333 24310333 A T ZNF254 Missense_Mutation p.I511F 0.24 deleterious(0) possibly_damaging(0.855) TCGA-HJ-7597-01 19 29698557 29698557 T C UQCRFS1 Silent p.S241S 0.26 TCGA-HJ-7597-01 19 30165483 30165483 A G PLEKHF1 Missense_Mutation p.D246G 0.32 tolerated(0.15) benign(0.397) TCGA-HJ-7597-01 19 30314730 30314730 G A CCNE1 3'UTR 0.31 TCGA-HJ-7597-01 19 31040129 31040129 C T ZNF536 Silent p.S1201S 0.06 TCGA-HJ-7597-01 19 3151745 3151745 G A GNA15 Missense_Mutation p.V176I 0.33 tolerated(0.81) benign(0.002) TCGA-HJ-7597-01 19 33623132 33623132 G A WDR88 Silent p.P19P 0.27 TCGA-HJ-7597-01 19 35612123 35612123 C T FXYD3 Intron 0.29 TCGA-HJ-7597-01 19 35761683 35761684 - C USF2 Frame_Shift_Ins p.R217Pfs*10 0.20 TCGA-HJ-7597-01 19 36276311 36276311 G T ARHGAP33 Missense_Mutation p.G623V 0.31 deleterious_low_confidence(0.03) probably_damaging(0.979) TCGA-HJ-7597-01 19 36517493 36517493 G A CLIP3 Missense_Mutation p.P186L 0.27 deleterious(0.01) probably_damaging(0.986) TCGA-HJ-7597-01 19 37678131 37678131 T C ZNF585B Missense_Mutation p.D103G 0.20 tolerated(0.15) benign(0) TCGA-HJ-7597-01 19 3821382 3821382 C T ZFR2 Silent p.A529A 0.50 TCGA-HJ-7597-01 19 39116703 39116703 C T EIF3K Silent p.L105L 0.25 TCGA-HJ-7597-01 19 39207831 39207831 C T ACTN4 Missense_Mutation p.R340C 0.33 deleterious(0.02) benign(0.009) TCGA-HJ-7597-01 19 39517602 39517602 C T FBXO27 Missense_Mutation p.V206I 0.23 tolerated(0.15) probably_damaging(0.996) TCGA-HJ-7597-01 19 39823749 39823751 CTC - GMFG In_Frame_Del p.E56del 0.26 TCGA-HJ-7597-01 19 40368737 40368737 G A FCGBP Missense_Mutation p.T4204M 0.03 probably_damaging(0.938) TCGA-HJ-7597-01 19 41132959 41132959 C T LTBP4 Silent p.Y1421Y 0.28 TCGA-HJ-7597-01 19 41509957 41509957 G A CYP2B6 Missense_Mutation p.V75M 0.19 deleterious(0.02) probably_damaging(0.957) TCGA-HJ-7597-01 19 41928113 41928113 G A BCKDHA Missense_Mutation p.V231I 0.33 tolerated(0.51) benign(0.008) TCGA-HJ-7597-01 19 42187807 42187807 G A CEACAM7 Silent p.S205S 0.23 TCGA-HJ-7597-01 19 42224051 42224051 C T CEACAM5 Silent p.D565D 0.27 TCGA-HJ-7597-01 19 42343292 42343292 C T LYPD4 Splice_Site p.X23_splice 0.23 TCGA-HJ-7597-01 19 42509992 42509992 G A GRIK5 Missense_Mutation p.R716C 0.37 deleterious(0.01) probably_damaging(0.918) TCGA-HJ-7597-01 19 42791309 42791309 G A CIC Silent p.P123P 0.36 TCGA-HJ-7597-01 19 42795157 42795157 C T CIC Missense_Mutation p.A746V 0.11 probably_damaging(0.935) TCGA-HJ-7597-01 19 43026288 43026288 G A CEACAM1 Missense_Mutation p.A164V 0.24 tolerated(1) benign(0.099) TCGA-HJ-7597-01 19 43098935 43098935 G A CEACAM8 Nonsense_Mutation p.Q16* 0.07 TCGA-HJ-7597-01 19 4365576 4365576 C A SH3GL1 Silent p.R78R 0.11 TCGA-HJ-7597-01 19 44980971 44980971 G A ZNF180 Missense_Mutation p.P576L 0.27 deleterious(0) probably_damaging(1) TCGA-HJ-7597-01 19 46206170 46206170 G A QPCTL Missense_Mutation p.V338M 0.23 deleterious(0) probably_damaging(0.998) TCGA-HJ-7597-01 19 46280705 46280705 G A DMPK Silent p.L352L 0.31 TCGA-HJ-7597-01 19 46289222 46289222 G A DMWD Missense_Mutation p.A511V 0.32 tolerated(0.76) benign(0.001) TCGA-HJ-7597-01 19 4658063 4658063 A C C19orf10 Missense_Mutation p.L159R 0.37 deleterious(0) possibly_damaging(0.899) TCGA-HJ-7597-01 19 46663963 46663963 G A IGFL2 Missense_Mutation p.A67T 0.27 tolerated(1) benign(0.023) TCGA-HJ-7597-01 19 47225520 47225520 G A STRN4 Missense_Mutation p.R669C 0.31 deleterious(0.01) benign(0.023) TCGA-HJ-7597-01 19 474683 474683 G A ODF3L2 Missense_Mutation p.T22M 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.549) TCGA-HJ-7597-01 19 49012113 49012113 C T LMTK3 Silent p.P213P 0.17 TCGA-HJ-7597-01 19 49316486 49316486 G A HSD17B14 Silent p.Y253Y 0.33 TCGA-HJ-7597-01 19 49391390 49391390 G A TULP2 Silent p.H255H 0.18 TCGA-HJ-7597-01 19 49621786 49621786 C A C19orf73 3'UTR 0.15 TCGA-HJ-7597-01 19 50105065 50105065 G A PRR12 Missense_Mutation p.A1555T 0.16 unknown(0) TCGA-HJ-7597-01 19 50155694 50155694 G - SCAF1 Frame_Shift_Del p.A685Pfs*53 0.36 TCGA-HJ-7597-01 19 50156708 50156708 C T SCAF1 Missense_Mutation p.A1021V 0.30 unknown(0) TCGA-HJ-7597-01 19 50165476 50165476 C T IRF3 Silent p.T237T 0.28 TCGA-HJ-7597-01 19 50916998 50916998 G T POLD1 Splice_Site p.X751_splice 0.25 TCGA-HJ-7597-01 19 5212381 5212381 G A PTPRS Missense_Mutation p.P1579L 0.45 deleterious(0.02) probably_damaging(1) TCGA-HJ-7597-01 19 52249833 52249833 C T FPR1 Missense_Mutation p.V139M 0.19 tolerated(0.07) possibly_damaging(0.473) TCGA-HJ-7597-01 19 52954945 52954945 A G ZNF578 5'Flank 0.17 TCGA-HJ-7597-01 19 54377407 54377407 G T MYADM Silent p.A208A 0.05 TCGA-HJ-7597-01 19 54395051 54395051 C T PRKCG Missense_Mutation p.T218M 0.34 deleterious(0.03) possibly_damaging(0.857) TCGA-HJ-7597-01 19 54783647 54783647 T G LILRB2 Silent p.T118T 0.07 TCGA-HJ-7597-01 19 54844919 54844919 G - LILRA4 Frame_Shift_Del p.P475Qfs*69 0.16 TCGA-HJ-7597-01 19 55449463 55449463 C T NLRP7 Missense_Mutation p.R693Q 0.26 tolerated(0.24) benign(0.166) TCGA-HJ-7597-01 19 56321602 56321602 G A NLRP11 Missense_Mutation p.S125L 0.32 tolerated(0.1) benign(0.001) TCGA-HJ-7597-01 19 57803241 57803241 A G ZNF460 Silent p.G444G 0.20 TCGA-HJ-7597-01 19 57986509 57986509 T C ZNF772 Missense_Mutation p.T69A 0.29 tolerated(0.82) benign(0) TCGA-HJ-7597-01 19 58370824 58370824 A G ZNF587 Silent p.G348G 0.24 TCGA-HJ-7597-01 19 58879828 58879828 C T ZNF837 Missense_Mutation p.R291H 0.11 deleterious(0) probably_damaging(0.975) TCGA-HJ-7597-01 19 605121 605121 A G HCN2 Missense_Mutation p.M373V 0.29 deleterious(0.01) benign(0.262) TCGA-HJ-7597-01 19 613949 613949 G A HCN2 Silent p.V641V 0.09 TCGA-HJ-7597-01 19 7531811 7531811 C T ARHGEF18 Missense_Mutation p.A783V 0.26 tolerated(0.51) benign(0.001) TCGA-HJ-7597-01 19 8203327 8203327 C T FBN3 Silent p.P329P 0.31 TCGA-HJ-7597-01 19 8564415 8564416 - G PRAM1 Frame_Shift_Ins p.K93Qfs*7 0.11 TCGA-HJ-7597-01 1 10521575 10521575 G T DFFA Missense_Mutation p.P323H 0.11 deleterious(0) possibly_damaging(0.789) TCGA-HJ-7597-01 1 109772104 109772104 G A SARS Silent p.A119A 0.04 TCGA-HJ-7597-01 1 11087239 11087239 G A MASP2 Silent p.V588V 0.21 TCGA-HJ-7597-01 1 11217234 11217234 G A MTOR Missense_Mutation p.R1482C 0.30 deleterious(0) probably_damaging(0.994) TCGA-HJ-7597-01 1 112998629 112998629 G A CTTNBP2NL Missense_Mutation p.R172H 0.29 deleterious(0.01) probably_damaging(1) TCGA-HJ-7597-01 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.40 tolerated(0.06) benign(0.006) TCGA-HJ-7597-01 1 11561902 11561902 G A PTCHD2 Missense_Mutation p.A285T 0.37 tolerated(0.19) possibly_damaging(0.691) TCGA-HJ-7597-01 1 117660760 117660760 C T TRIM45 Missense_Mutation p.R373H 0.25 tolerated(0.54) benign(0.003) TCGA-HJ-7597-01 1 12336527 12336527 T C VPS13D Missense_Mutation p.V961A 0.08 benign(0.156) TCGA-HJ-7597-01 1 12381923 12381923 G - VPS13D Frame_Shift_Del p.V2536Yfs*19 0.16 TCGA-HJ-7597-01 1 1273433 1273434 - G DVL1 Frame_Shift_Ins p.P522Tfs*13 0.12 TCGA-HJ-7597-01 1 14107244 14107244 C T PRDM2 Missense_Mutation p.P985L 0.30 unknown(0) TCGA-HJ-7597-01 1 14107250 14107250 C A PRDM2 Missense_Mutation p.P987H 0.06 unknown(0) TCGA-HJ-7597-01 1 145474607 145474607 C A ANKRD34A Missense_Mutation p.P427T 0.29 deleterious(0) probably_damaging(0.931) TCGA-HJ-7597-01 1 145578119 145578119 C T PIAS3 Missense_Mutation p.R28W 0.10 deleterious(0.02) benign(0.049) TCGA-HJ-7597-01 1 150318544 150318544 C T PRPF3 Missense_Mutation p.A564V 0.27 deleterious(0) probably_damaging(0.997) TCGA-HJ-7597-01 1 150444786 150444786 G A RPRD2 Missense_Mutation p.R1121H 0.23 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-HJ-7597-01 1 151133390 151133390 G A LYSMD1 Missense_Mutation p.R218W 0.24 deleterious(0) probably_damaging(1) TCGA-HJ-7597-01 1 151400825 151400826 - T POGZ Frame_Shift_Ins p.V212Cfs*103 0.15 TCGA-HJ-7597-01 1 154571020 154571020 G - ADAR Frame_Shift_Del p.P548Qfs*16 0.20 TCGA-HJ-7597-01 1 155734760 155734760 G A GON4L Intron 0.36 TCGA-HJ-7597-01 1 156213615 156213616 - C PAQR6 3'UTR 0.27 TCGA-HJ-7597-01 1 1562274 1562274 G A MIB2 Missense_Mutation p.A494T 0.16 tolerated(0.29) benign(0.034) TCGA-HJ-7597-01 1 156268590 156268591 - A VHLL Frame_Shift_Ins p.A131Cfs*59 0.11 TCGA-HJ-7597-01 1 158064489 158064489 G T KIRREL Missense_Mutation p.R618M 0.29 tolerated(0.1) possibly_damaging(0.867) TCGA-HJ-7597-01 1 159505663 159505663 A G OR10J5 Silent p.I45I 0.26 TCGA-HJ-7597-01 1 160000584 160000584 A - PIGM Frame_Shift_Del p.C316Vfs*10 0.30 TCGA-HJ-7597-01 1 160106150 160106150 C T ATP1A2 Silent p.Y851Y 0.27 TCGA-HJ-7597-01 1 161160941 161160941 G A ADAMTS4 Missense_Mutation p.A834V 0.15 tolerated_low_confidence(0.52) benign(0.001) TCGA-HJ-7597-01 1 162546600 162546602 TTC - UAP1 In_Frame_Del p.L108del 0.28 TCGA-HJ-7597-01 1 169511874 169511874 T C F5 Silent p.S818S 0.18 TCGA-HJ-7597-01 1 174976324 174976324 T A CACYBP Missense_Mutation p.S141R 0.34 deleterious(0) probably_damaging(0.996) TCGA-HJ-7597-01 1 178834299 178834299 A - ANGPTL1 Frame_Shift_Del p.S205Pfs*45 0.31 TCGA-HJ-7597-01 1 179078099 179078099 G A ABL2 Missense_Mutation p.P768L 0.24 tolerated_low_confidence(0.49) benign(0.114) TCGA-HJ-7597-01 1 17982495 17982495 C T ARHGEF10L Missense_Mutation p.P868L 0.30 deleterious(0) benign(0.008) TCGA-HJ-7597-01 1 182856514 182856514 G - DHX9 Frame_Shift_Del p.A1255Pfs*63 0.23 TCGA-HJ-7597-01 1 186008082 186008082 C T HMCN1 Silent p.C1991C 0.39 TCGA-HJ-7597-01 1 186122977 186122977 A G HMCN1 Silent p.T5038T 0.13 TCGA-HJ-7597-01 1 18809546 18809546 G A KLHDC7A Missense_Mutation p.A691T 0.23 deleterious(0.04) benign(0.023) TCGA-HJ-7597-01 1 1956773 1956774 - C GABRD Frame_Shift_Ins p.V64Rfs*365 0.26 TCGA-HJ-7597-01 1 19671731 19671731 T - CAPZB Frame_Shift_Del p.T202Lfs*2 0.21 TCGA-HJ-7597-01 1 197144169 197144169 G A ZBTB41 Silent p.S652S 0.22 TCGA-HJ-7597-01 1 202409874 202409874 G T PPP1R12B Missense_Mutation p.R500L 0.25 deleterious(0) benign(0.159) TCGA-HJ-7597-01 1 202549645 202549645 A - PPP1R12B Frame_Shift_Del p.N970Mfs*88 0.29 TCGA-HJ-7597-01 1 205033795 205033795 G A CNTN2 Missense_Mutation p.S479N 0.15 deleterious(0) possibly_damaging(0.882) TCGA-HJ-7597-01 1 205210851 205210851 C T TMCC2 Silent p.P142P 0.36 TCGA-HJ-7597-01 1 205492350 205492350 C A CDK18 Missense_Mutation p.R19S 0.21 tolerated_low_confidence(0.64) probably_damaging(0.99) TCGA-HJ-7597-01 1 205687461 205687461 C T NUCKS1 Missense_Mutation p.E227K 0.24 tolerated(0.3) benign(0.004) TCGA-HJ-7597-01 1 205811809 205811809 T C PM20D1 Missense_Mutation p.N300D 0.09 tolerated(0.65) benign(0.002) TCGA-HJ-7597-01 1 211280696 211280696 C A KCNH1 Missense_Mutation p.A35S 0.20 deleterious(0) probably_damaging(1) TCGA-HJ-7597-01 1 214505400 214505402 AGA - SMYD2 In_Frame_Del p.K327del 0.19 TCGA-HJ-7597-01 1 215956110 215956110 A G USH2A Silent p.L3519L 0.36 TCGA-HJ-7597-01 1 222802330 222802330 G A MIA3 Missense_Mutation p.A590T 0.25 tolerated(0.14) benign(0.029) TCGA-HJ-7597-01 1 226426763 226426763 T C LIN9 Missense_Mutation p.Q401R 0.29 deleterious(0.01) possibly_damaging(0.805) TCGA-HJ-7597-01 1 228462439 228462439 C T OBSCN Silent p.G2325G 0.18 TCGA-HJ-7597-01 1 228509303 228509303 G A OBSCN Missense_Mutation p.V5878M 0.25 probably_damaging(0.988) TCGA-HJ-7597-01 1 228547527 228547527 T G OBSCN Intron 0.59 TCGA-HJ-7597-01 1 232561511 232561511 C T SIPA1L2 Missense_Mutation p.R1485H 0.34 deleterious(0) probably_damaging(1) TCGA-HJ-7597-01 1 233136126 233136126 G A PCNXL2 Silent p.H1751H 0.32 TCGA-HJ-7597-01 1 23885634 23885634 G T ID3 Missense_Mutation p.P95H 0.13 tolerated(0.34) benign(0.271) TCGA-HJ-7597-01 1 240070882 240070882 G A CHRM3 Missense_Mutation p.R44Q 0.24 tolerated(0.8) benign(0) TCGA-HJ-7597-01 1 247464040 247464040 G A ZNF496 Silent p.N515N 0.31 TCGA-HJ-7597-01 1 249151580 249151581 - C ZNF692 Frame_Shift_Ins p.L115Afs*54 0.25 TCGA-HJ-7597-01 1 25569036 25569036 T C C1orf63 3'UTR 0.30 TCGA-HJ-7597-01 1 25890244 25890244 C T LDLRAP1 Missense_Mutation p.P237S 0.24 tolerated(0.31) benign(0.008) TCGA-HJ-7597-01 1 27089705 27089706 - G ARID1A Frame_Shift_Ins p.M890Hfs*46 0.22 TCGA-HJ-7597-01 1 27105931 27105931 G - ARID1A Frame_Shift_Del p.D1850Tfs*33 0.22 TCGA-HJ-7597-01 1 27278443 27278443 G - C1orf172 Frame_Shift_Del p.S144Afs*104 0.17 TCGA-HJ-7597-01 1 27687445 27687445 C T MAP3K6 Silent p.A629A 0.21 TCGA-HJ-7597-01 1 27755319 27755319 C T WASF2 Missense_Mutation p.V28M 0.11 tolerated(0.21) unknown(0) TCGA-HJ-7597-01 1 29475303 29475303 A G SRSF4 Silent p.S368S 0.23 TCGA-HJ-7597-01 1 31896597 31896597 C T SERINC2 Missense_Mutation p.R42C 0.22 deleterious(0.01) possibly_damaging(0.901) TCGA-HJ-7597-01 1 33292220 33292221 CT - S100PBP Frame_Shift_Del p.S175Ffs*12 0.19 TCGA-HJ-7597-01 1 3396446 3396446 G A ARHGEF16 Silent p.A653A 0.40 TCGA-HJ-7597-01 1 34003177 34003177 G A CSMD2 Missense_Mutation p.R3078C 0.08 deleterious(0.01) possibly_damaging(0.631) TCGA-HJ-7597-01 1 3644760 3644760 C T TP73 Silent p.D351D 0.08 TCGA-HJ-7597-01 1 39900149 39900149 G A MACF1 Missense_Mutation p.A3815T 0.29 benign(0.06) TCGA-HJ-7597-01 1 40204576 40204576 G A PPIE Missense_Mutation p.A2T 0.34 tolerated_low_confidence(0.06) probably_damaging(0.991) TCGA-HJ-7597-01 1 43912756 43912756 G A SZT2 Missense_Mutation p.G3011D 0.21 deleterious(0) probably_damaging(1) TCGA-HJ-7597-01 1 44056811 44056811 G A PTPRF Missense_Mutation p.R373H 0.29 deleterious(0.03) probably_damaging(1) TCGA-HJ-7597-01 1 44063476 44063476 G T PTPRF Missense_Mutation p.R624L 0.17 tolerated(0.89) benign(0.175) TCGA-HJ-7597-01 1 44447064 44447064 G A B4GALT2 Missense_Mutation p.G107R 0.33 tolerated(0.41) benign(0.398) TCGA-HJ-7597-01 1 46511600 46511600 A - PIK3R3 Frame_Shift_Del p.C393Afs*9 0.25 TCGA-HJ-7597-01 1 46743909 46743909 C T RAD54L Silent p.F733F 0.19 TCGA-HJ-7597-01 1 52811808 52811808 C T ZFYVE9 Missense_Mutation p.P1398L 0.28 deleterious(0) probably_damaging(1) TCGA-HJ-7597-01 1 55119617 55119617 G A MROH7 Missense_Mutation p.D340N 0.09 tolerated_low_confidence(0.06) benign(0.075) TCGA-HJ-7597-01 1 6206379 6206379 G A CHD5 Silent p.S565S 0.29 TCGA-HJ-7597-01 1 6257785 6257785 T - RPL22 Frame_Shift_Del p.K15Rfs*5 0.37 TCGA-HJ-7597-01 1 65301870 65301870 T C JAK1 Missense_Mutation p.K1057E 0.49 deleterious(0) probably_damaging(0.999) TCGA-HJ-7597-01 1 65321216 65321216 G A JAK1 Missense_Mutation p.R542C 0.30 deleterious(0.02) possibly_damaging(0.614) TCGA-HJ-7597-01 1 66831415 66831415 T C PDE4B Silent p.H450H 0.26 TCGA-HJ-7597-01 1 76200474 76200474 A G ACADM Splice_Site p.X134_splice 0.23 TCGA-HJ-7597-01 1 78279472 78279472 C T FAM73A Missense_Mutation p.R231C 0.30 deleterious(0) probably_damaging(0.995) TCGA-HJ-7597-01 1 78470858 78470858 A T DNAJB4 Nonsense_Mutation p.K22* 0.23 TCGA-HJ-7597-01 1 8404001 8404001 G A SLC45A1 Silent p.L725L 0.35 TCGA-HJ-7597-01 1 86048800 86048800 T C CYR61 3'UTR 0.25 TCGA-HJ-7597-01 1 93996334 93996334 G A FNBP1L Missense_Mutation p.R178H 0.42 deleterious(0) probably_damaging(1) TCGA-HJ-7597-01 20 13053052 13053052 C T SPTLC3 Missense_Mutation p.T151M 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-HJ-7597-01 20 17617341 17617341 C T RRBP1 Missense_Mutation p.G307R 0.36 tolerated(0.13) probably_damaging(0.98) TCGA-HJ-7597-01 20 21687400 21687400 G A PAX1 Missense_Mutation p.G204D 0.08 deleterious(0.02) probably_damaging(0.924) TCGA-HJ-7597-01 20 30602812 30602812 C - CCM2L Frame_Shift_Del p.D48Tfs*27 0.23 TCGA-HJ-7597-01 20 3129630 3129630 T C FASTKD5 Silent p.S29S 0.29 TCGA-HJ-7597-01 20 33572917 33572917 G A MYH7B Missense_Mutation p.A306T 0.22 benign(0.314) TCGA-HJ-7597-01 20 33582061 33582063 GAG - MYH7B In_Frame_Del p.E897del 0.10 TCGA-HJ-7597-01 20 33876355 33876355 A G FAM83C Missense_Mutation p.Y239H 0.18 deleterious(0) probably_damaging(1) TCGA-HJ-7597-01 20 34206915 34206915 C T SPAG4 Missense_Mutation p.S263F 0.22 deleterious(0) probably_damaging(0.999) TCGA-HJ-7597-01 20 3678776 3678776 G T SIGLEC1 Silent p.P597P 0.64 TCGA-HJ-7597-01 20 36962864 36962864 T C BPI Silent p.I439I 0.25 TCGA-HJ-7597-01 20 42354972 42354972 A - GTSF1L Frame_Shift_Del p.P122Lfs*50 0.25 TCGA-HJ-7597-01 20 42788504 42788504 C T JPH2 Missense_Mutation p.R308H 0.36 deleterious(0) probably_damaging(1) TCGA-HJ-7597-01 20 42973914 42973914 A G R3HDML Silent p.A175A 0.06 TCGA-HJ-7597-01 20 47269921 47269921 C T PREX1 Missense_Mutation p.R775Q 0.19 tolerated(0.06) benign(0.148) TCGA-HJ-7597-01 20 47688929 47688929 G A CSE1L Missense_Mutation p.R292H 0.34 tolerated(0.11) possibly_damaging(0.631) TCGA-HJ-7597-01 20 47991257 47991257 G A KCNB1 Silent p.T280T 0.19 TCGA-HJ-7597-01 20 51872444 51872445 - C TSHZ2 Frame_Shift_Ins p.M819Hfs*11 0.28 TCGA-HJ-7597-01 20 54824454 54824454 C T MC3R Silent p.S185S 0.29 TCGA-HJ-7597-01 20 54956591 54956591 A G AURKA Silent p.H201H 0.09 TCGA-HJ-7597-01 20 55059239 55059239 C T RTFDC1 Silent p.C157C 0.25 TCGA-HJ-7597-01 20 57576650 57576650 G A CTSZ Silent p.S119S 0.19 TCGA-HJ-7597-01 20 6021649 6021649 C T LRRN4 3'UTR 0.20 TCGA-HJ-7597-01 20 62321432 62321432 C - RTEL1 Intron 0.16 TCGA-HJ-7597-01 20 62421541 62421541 G A ZBTB46 Silent p.H190H 0.17 TCGA-HJ-7597-01 20 62572046 62572046 G A UCKL1 Silent p.R401R 0.32 TCGA-HJ-7597-01 20 76838 76838 A G DEFB125 Missense_Mutation p.D84G 0.14 tolerated(0.16) benign(0.105) TCGA-HJ-7597-01 20 7866403 7866403 C T HAO1 Missense_Mutation p.A308T 0.30 deleterious(0) probably_damaging(1) TCGA-HJ-7597-01 21 32185383 32185383 G A KRTAP8-1 Silent p.F52F 0.20 TCGA-HJ-7597-01 21 33073415 33073415 T C SCAF4 Missense_Mutation p.M224V 0.14 benign(0.035) TCGA-HJ-7597-01 21 33684248 33684248 G A MRAP Missense_Mutation p.V154I 0.28 tolerated_low_confidence(0.22) benign(0.003) TCGA-HJ-7597-01 21 34907049 34907049 C T GART Silent p.G84G 0.27 TCGA-HJ-7597-01 21 38497038 38497038 T C TTC3 Missense_Mutation p.L410P 0.41 tolerated(0.27) benign(0) TCGA-HJ-7597-01 21 38529174 38529174 G A TTC3 Silent p.L986L 0.24 TCGA-HJ-7597-01 21 43519199 43519199 G T UMODL1 Silent p.V365V 0.26 TCGA-HJ-7597-01 21 44324109 44324109 G A NDUFV3 Silent p.A329A 0.14 TCGA-HJ-7597-01 21 46086745 46086745 C T KRTAP12-2 Missense_Mutation p.C20Y 0.10 deleterious(0) unknown(0) TCGA-HJ-7597-01 21 47536294 47536294 G A COL6A2 Missense_Mutation p.V302I 0.39 tolerated(0.49) benign(0.067) TCGA-HJ-7597-01 21 47546072 47546072 G A COL6A2 Silent p.Q781Q 0.17 TCGA-HJ-7597-01 22 19438229 19438229 T C UFD1L Silent p.E296E 0.28 TCGA-HJ-7597-01 22 19511360 19511360 G A CLDN5 Missense_Mutation p.A225V 0.45 deleterious(0) probably_damaging(0.975) TCGA-HJ-7597-01 22 20130522 20130522 C - ZDHHC8 Frame_Shift_Del p.T459Rfs*177 0.21 TCGA-HJ-7597-01 22 20230610 20230610 G A RTN4R Silent p.L16L 0.22 TCGA-HJ-7597-01 22 21988981 21988981 T C CCDC116 Missense_Mutation p.L210P 0.28 tolerated(0.11) benign(0.092) TCGA-HJ-7597-01 22 22989736 22989736 G A GGTLC2 Silent p.T162T 0.30 TCGA-HJ-7597-01 22 24560426 24560426 T C CABIN1 Missense_Mutation p.M1602T 0.29 deleterious(0) possibly_damaging(0.713) TCGA-HJ-7597-01 22 26890185 26890185 T C TFIP11 Missense_Mutation p.Q693R 0.38 tolerated(0.38) benign(0.035) TCGA-HJ-7597-01 22 29090060 29090060 C T CHEK2 Missense_Mutation p.R517H 0.26 deleterious(0) probably_damaging(0.995) TCGA-HJ-7597-01 22 29621174 29621174 G A EMID1 Silent p.R124R 0.22 TCGA-HJ-7597-01 22 31723054 31723054 G A PATZ1 Silent p.V629V 0.19 TCGA-HJ-7597-01 22 32754283 32754283 T C RFPL3 Silent p.D75D 0.33 TCGA-HJ-7597-01 22 33264950 33264950 T C SYN3 Intron 0.27 TCGA-HJ-7597-01 22 38051313 38051314 - C SH3BP1 Frame_Shift_Ins p.Q579Pfs*81 0.22 TCGA-HJ-7597-01 22 38322025 38322025 G A MICALL1 Silent p.P480P 0.16 TCGA-HJ-7597-01 22 38823343 38823343 G A KCNJ4 Silent p.I265I 0.35 TCGA-HJ-7597-01 22 39627801 39627801 G A PDGFB Silent p.I94I 0.20 TCGA-HJ-7597-01 22 41753226 41753226 C T ZC3H7B Silent p.C909C 0.30 TCGA-HJ-7597-01 22 42289201 42289201 C - SREBF2 Frame_Shift_Del p.L765Wfs*13 0.20 TCGA-HJ-7597-01 22 43623396 43623396 G A SCUBE1 Silent p.N397N 0.25 TCGA-HJ-7597-01 22 44063056 44063056 C T EFCAB6 Silent p.P637P 0.13 TCGA-HJ-7597-01 22 46932131 46932131 G A CELSR1 Missense_Mutation p.R313C 0.18 deleterious(0) probably_damaging(1) TCGA-HJ-7597-01 22 50192691 50192691 C T BRD1 Missense_Mutation p.R534H 0.26 deleterious(0) probably_damaging(0.999) TCGA-HJ-7597-01 22 50528910 50528910 G A MOV10L1 Intron 0.17 TCGA-HJ-7597-01 22 50882340 50882340 G A PPP6R2 Silent p.A849A 0.64 TCGA-HJ-7597-01 22 51012809 51012809 T G CPT1B Missense_Mutation p.M309L 0.27 deleterious(0.03) benign(0.017) TCGA-HJ-7597-01 22 51160556 51160556 C T SHANK3 Missense_Mutation p.P1448L 0.42 probably_damaging(0.998) TCGA-HJ-7597-01 2 105472966 105472966 G A POU3F3 Missense_Mutation p.R333H 0.12 deleterious(0) probably_damaging(0.998) TCGA-HJ-7597-01 2 113765559 113765559 A G IL36A Missense_Mutation p.I139V 0.19 tolerated(0.24) benign(0.036) TCGA-HJ-7597-01 2 11751001 11751001 C T GREB1 Silent p.L952L 0.18 TCGA-HJ-7597-01 2 11777870 11777870 C T GREB1 Missense_Mutation p.P1792L 0.12 deleterious(0) possibly_damaging(0.704) TCGA-HJ-7597-01 2 1481016 1481016 G A TPO Silent p.A326A 0.42 TCGA-HJ-7597-01 2 152293790 152293790 T - RIF1 Frame_Shift_Del p.S472Pfs*34 0.16 TCGA-HJ-7597-01 2 152301934 152301934 T - RIF1 Frame_Shift_Del p.S692Qfs*10 0.15 TCGA-HJ-7597-01 2 153519623 153519623 G A PRPF40A Nonsense_Mutation p.R718* 0.31 TCGA-HJ-7597-01 2 15468434 15468434 C T NBAS Silent p.G1450G 0.22 TCGA-HJ-7597-01 2 160035383 160035383 A G TANC1 Missense_Mutation p.Q740R 0.14 deleterious(0.01) probably_damaging(0.995) TCGA-HJ-7597-01 2 163128888 163128888 G A IFIH1 Nonsense_Mutation p.R822* 0.20 TCGA-HJ-7597-01 2 164466291 164466291 C T FIGN Missense_Mutation p.R684H 0.56 tolerated(0.21) benign(0.096) TCGA-HJ-7597-01 2 1648403 1648403 G A PXDN Nonsense_Mutation p.R1244* 0.10 TCGA-HJ-7597-01 2 172563873 172563873 C T DYNC1I2 Silent p.G107G 0.28 TCGA-HJ-7597-01 2 172647993 172647993 C T SLC25A12 Missense_Mutation p.G518D 0.19 deleterious(0.03) benign(0.219) TCGA-HJ-7597-01 2 17698737 17698737 T - RAD51AP2 Frame_Shift_Del p.T316Lfs*2 0.38 TCGA-HJ-7597-01 2 17877597 17877597 T C SMC6 Missense_Mutation p.K831E 0.70 tolerated(0.8) benign(0.038) TCGA-HJ-7597-01 2 179440987 179440987 G A TTN Missense_Mutation p.T23291I 0.33 TCGA-HJ-7597-01 2 191302246 191302246 T - MFSD6 Frame_Shift_Del p.F499Lfs*8 0.27 TCGA-HJ-7597-01 2 196822106 196822106 G A DNAH7 Missense_Mutation p.T986M 0.38 deleterious(0.01) probably_damaging(0.995) TCGA-HJ-7597-01 2 201950183 201950183 A G NDUFB3 Missense_Mutation p.N48D 0.20 deleterious(0.04) benign(0.024) TCGA-HJ-7597-01 2 202671472 202671472 C T CDK15 Missense_Mutation p.R29W 0.14 deleterious_low_confidence(0.01) benign(0.002) TCGA-HJ-7597-01 2 207413068 207413068 G T ADAM23 Missense_Mutation p.R286I 0.37 deleterious(0.01) possibly_damaging(0.871) TCGA-HJ-7597-01 2 207459518 207459518 G A ADAM23 Silent p.T712T 0.21 TCGA-HJ-7597-01 2 215809791 215809791 C T ABCA12 Missense_Mutation p.R2426Q 0.23 deleterious(0) probably_damaging(0.999) TCGA-HJ-7597-01 2 215914482 215914482 G A ABCA12 Silent p.S187S 0.31 TCGA-HJ-7597-01 2 219127440 219127440 G T GPBAR1 5'UTR 0.20 TCGA-HJ-7597-01 2 219508084 219508084 C - ZNF142 Frame_Shift_Del p.G1052Dfs*20 0.29 TCGA-HJ-7597-01 2 219920419 219920419 C T IHH Missense_Mutation p.R249H 0.32 tolerated(0.06) benign(0.042) TCGA-HJ-7597-01 2 220333657 220333657 G - SPEG Frame_Shift_Del p.G1127Afs*27 0.13 TCGA-HJ-7597-01 2 226447162 226447162 C T NYAP2 Silent p.P343P 0.31 TCGA-HJ-7597-01 2 227662789 227662791 GAA - IRS1 In_Frame_Del p.F222del 0.33 TCGA-HJ-7597-01 2 231150516 231150516 C T SP140 Silent p.N538N 0.11 TCGA-HJ-7597-01 2 231775308 231775308 G A GPR55 Missense_Mutation p.R124C 0.13 tolerated(0.15) benign(0.06) TCGA-HJ-7597-01 2 234545526 234545526 T - UGT1A10 Frame_Shift_Del p.S122Rfs*12 0.15 TCGA-HJ-7597-01 2 235405084 235405084 G A ARL4C Silent p.T49T 0.19 TCGA-HJ-7597-01 2 238280505 238280505 G A COL6A3 Silent p.P1385P 0.33 TCGA-HJ-7597-01 2 239040289 239040289 C T ESPNL Silent p.N978N 0.20 TCGA-HJ-7597-01 2 240085512 240085512 G A HDAC4 Missense_Mutation p.R200C 0.13 tolerated(0.09) probably_damaging(0.953) TCGA-HJ-7597-01 2 241570285 241570285 G A GPR35 Missense_Mutation p.V337M 0.40 tolerated(0.36) benign(0.102) TCGA-HJ-7597-01 2 242080005 242080005 T C PASK Silent p.S120S 0.39 TCGA-HJ-7597-01 2 26818155 26818156 CT - CIB4 Frame_Shift_Del p.R72Sfs*11 0.15 TCGA-HJ-7597-01 2 26950776 26950776 C T KCNK3 Silent p.A175A 0.18 TCGA-HJ-7597-01 2 27587240 27587240 G A EIF2B4 3'Flank 0.18 TCGA-HJ-7597-01 2 27663726 27663726 G A NRBP1 Silent p.Q416Q 0.07 TCGA-HJ-7597-01 2 27664014 27664014 C T NRBP1 Silent p.N450N 0.25 TCGA-HJ-7597-01 2 27688653 27688653 T C IFT172 Missense_Mutation p.I597V 0.08 tolerated(0.25) benign(0.254) TCGA-HJ-7597-01 2 29287715 29287715 G A C2orf71 3'UTR 0.26 TCGA-HJ-7597-01 2 36668566 36668566 C T CRIM1 Missense_Mutation p.P224L 0.20 deleterious(0) benign(0.057) TCGA-HJ-7597-01 2 37353552 37353552 A G EIF2AK2 Missense_Mutation p.F263S 0.21 deleterious(0) possibly_damaging(0.848) TCGA-HJ-7597-01 2 47278950 47278950 C T TTC7A Missense_Mutation p.P695S 0.46 tolerated(0.86) benign(0.001) TCGA-HJ-7597-01 2 5833115 5833115 A - SOX11 Frame_Shift_Del p.M89Cfs*2 0.09 TCGA-HJ-7597-01 2 60688523 60688523 G A BCL11A Silent p.S508S 0.32 TCGA-HJ-7597-01 2 80136848 80136848 G A CTNNA2 Silent p.R327R 0.23 TCGA-HJ-7597-01 2 9630357 9630357 G T ADAM17 Silent p.S808S 0.20 TCGA-HJ-7597-01 2 96992232 96992232 C A ITPRIPL1 5'UTR 0.43 TCGA-HJ-7597-01 3 111795816 111795816 C T TMPRSS7 Silent p.H557H 0.17 TCGA-HJ-7597-01 3 112358275 112358275 A C CCDC80 Missense_Mutation p.S160A 0.27 tolerated(0.07) possibly_damaging(0.602) TCGA-HJ-7597-01 3 112969433 112969433 G A BOC Silent p.A43A 0.20 TCGA-HJ-7597-01 3 113379374 113379374 A G KIAA2018 Silent p.P385P 0.43 TCGA-HJ-7597-01 3 126730836 126730836 C T PLXNA1 Silent p.Y716Y 0.39 TCGA-HJ-7597-01 3 128060255 128060255 A G EEFSEC Missense_Mutation p.I322M 0.55 deleterious(0) probably_damaging(0.973) TCGA-HJ-7597-01 3 130447382 130447382 A G PIK3R4 Silent p.L578L 0.54 TCGA-HJ-7597-01 3 137822357 137822357 G T DZIP1L Missense_Mutation p.L153M 0.21 tolerated(0.08) probably_damaging(0.991) TCGA-HJ-7597-01 3 138738987 138738987 C T PRR23B Missense_Mutation p.G173S 0.22 tolerated(0.23) benign(0.241) TCGA-HJ-7597-01 3 141632589 141632589 A T ATP1B3 Missense_Mutation p.I148F 0.08 tolerated(0.22) benign(0.094) TCGA-HJ-7597-01 3 14220065 14220065 C T XPC Missense_Mutation p.A2T 0.19 deleterious_low_confidence(0.01) benign(0.126) TCGA-HJ-7597-01 3 142266679 142266679 C T ATR Missense_Mutation p.R1082H 0.17 tolerated(0.3) probably_damaging(0.999) TCGA-HJ-7597-01 3 142388367 142388367 G A PLS1 Missense_Mutation p.G69D 0.12 tolerated(0.06) probably_damaging(1) TCGA-HJ-7597-01 3 142524988 142524988 C T TRPC1 Missense_Mutation p.R765C 0.11 deleterious(0) benign(0.002) TCGA-HJ-7597-01 3 142525010 142525010 G A TRPC1 Missense_Mutation p.R772Q 0.09 deleterious(0) probably_damaging(0.963) TCGA-HJ-7597-01 3 147113919 147113919 G A ZIC4 Silent p.D186D 0.43 TCGA-HJ-7597-01 3 151105932 151105932 G A MED12L Missense_Mutation p.R1773H 0.37 deleterious(0.01) probably_damaging(0.994) TCGA-HJ-7597-01 3 167068281 167068283 TCT - ZBBX In_Frame_Del p.E151del 0.17 TCGA-HJ-7597-01 3 168818750 168818751 TC - MECOM Splice_Site p.X801_splice 0.11 TCGA-HJ-7597-01 3 172351525 172351525 G A NCEH1 Missense_Mutation p.R363C 0.37 deleterious(0) possibly_damaging(0.861) TCGA-HJ-7597-01 3 179537729 179537729 T G PEX5L Missense_Mutation p.E286D 0.17 tolerated(0.07) probably_damaging(0.997) TCGA-HJ-7597-01 3 180323592 180323593 - A TTC14 Frame_Shift_Ins p.Q302Tfs*15 0.24 TCGA-HJ-7597-01 3 182987530 182987530 C T B3GNT5 5'UTR 0.36 TCGA-HJ-7597-01 3 183699620 183699620 C T ABCC5 Missense_Mutation p.V348M 0.16 tolerated(0.11) benign(0.393) TCGA-HJ-7597-01 3 183756182 183756182 C - HTR3D Frame_Shift_Del p.L304Cfs*13 0.30 TCGA-HJ-7597-01 3 183824457 183824457 C T HTR3E Silent p.T475T 0.06 TCGA-HJ-7597-01 3 183994720 183994720 G A ECE2 Missense_Mutation p.R174H 0.37 tolerated(0.54) benign(0.001) TCGA-HJ-7597-01 3 187442794 187442794 G A BCL6 Missense_Mutation p.R638C 0.35 deleterious(0) probably_damaging(0.991) TCGA-HJ-7597-01 3 196288243 196288243 G T WDR53 Missense_Mutation p.A35D 0.18 deleterious(0.01) benign(0.038) TCGA-HJ-7597-01 3 197421303 197421303 G A KIAA0226 Missense_Mutation p.R543C 0.28 deleterious(0) probably_damaging(1) TCGA-HJ-7597-01 3 28382055 28382055 A G AZI2 Silent p.H18H 0.09 TCGA-HJ-7597-01 3 38039623 38039623 G A VILL Silent p.A269A 0.23 TCGA-HJ-7597-01 3 38159361 38159361 A G DLEC1 Missense_Mutation p.Y1517C 0.23 tolerated(0.07) benign(0.019) TCGA-HJ-7597-01 3 38163206 38163206 C T DLEC1 Nonsense_Mutation p.Q1652* 0.17 TCGA-HJ-7597-01 3 39227496 39227496 G A XIRP1 Silent p.P1147P 0.26 TCGA-HJ-7597-01 3 47378111 47378111 G A KLHL18 Missense_Mutation p.V329I 0.23 tolerated(0.06) benign(0.292) TCGA-HJ-7597-01 3 48698477 48698477 C T CELSR3 Missense_Mutation p.V531I 0.15 tolerated(0.06) possibly_damaging(0.658) TCGA-HJ-7597-01 3 49212566 49212566 G - KLHDC8B Frame_Shift_Del p.G281Afs*109 0.26 TCGA-HJ-7597-01 3 49690307 49690307 G A BSN Silent p.T1106T 0.24 TCGA-HJ-7597-01 3 50617906 50617906 A G HEMK1 3'UTR 0.55 TCGA-HJ-7597-01 3 51690036 51690036 G A RAD54L2 Missense_Mutation p.V1026M 0.20 tolerated(0.39) benign(0.23) TCGA-HJ-7597-01 3 51696526 51696526 C T RAD54L2 Missense_Mutation p.A1165V 0.20 tolerated_low_confidence(0.21) benign(0.079) TCGA-HJ-7597-01 3 52292564 52292564 C T WDR82 Silent p.A300A 0.26 TCGA-HJ-7597-01 3 58118574 58118575 - CA FLNB Frame_Shift_Ins p.V1512Qfs*2 0.18 TCGA-HJ-7597-01 3 62357222 62357222 T - FEZF2 Frame_Shift_Del p.I325Lfs*57 0.20 TCGA-HJ-7597-01 3 64133273 64133273 A G PRICKLE2 Missense_Mutation p.L298P 0.21 deleterious(0) probably_damaging(0.991) TCGA-HJ-7597-01 3 65361620 65361620 C A MAGI1 Missense_Mutation p.G999V 0.29 deleterious(0.04) probably_damaging(1) TCGA-HJ-7597-01 3 69230203 69230203 G A FRMD4B Missense_Mutation p.R900C 0.26 deleterious(0) probably_damaging(0.998) TCGA-HJ-7597-01 3 77671492 77671492 C T ROBO2 Silent p.D1239D 0.24 TCGA-HJ-7597-01 3 88105087 88105087 G C CGGBP1 Missense_Mutation p.R14G 0.27 tolerated(0.33) benign(0.198) TCGA-HJ-7597-01 4 100824920 100824920 A G DNAJB14 Silent p.T326T 0.21 TCGA-HJ-7597-01 4 103527761 103527761 C T NFKB1 Missense_Mutation p.H621Y 0.27 deleterious(0) probably_damaging(1) TCGA-HJ-7597-01 4 119952584 119952584 A G SYNPO2 Missense_Mutation p.K885R 0.27 deleterious(0) probably_damaging(1) TCGA-HJ-7597-01 4 123170765 123170765 C T KIAA1109 Nonsense_Mutation p.R1880* 0.39 TCGA-HJ-7597-01 4 128628042 128628042 C T INTU Missense_Mutation p.P730L 0.27 tolerated(0.05) benign(0.011) TCGA-HJ-7597-01 4 128807221 128807221 T - PLK4 Frame_Shift_Del p.L234Cfs*3 0.25 TCGA-HJ-7597-01 4 134084227 134084227 C T PCDH10 Nonsense_Mutation p.Q965* 0.28 TCGA-HJ-7597-01 4 140432716 140432716 C T SETD7 3'UTR 0.27 TCGA-HJ-7597-01 4 147561355 147561355 G A POU4F2 Missense_Mutation p.D209N 0.29 tolerated(0.05) benign(0.446) TCGA-HJ-7597-01 4 148594871 148594871 T A PRMT10 Missense_Mutation p.I165F 0.22 tolerated(0.06) benign(0.025) TCGA-HJ-7597-01 4 151520209 151520209 G C LRBA Missense_Mutation p.P1999R 0.35 deleterious(0) probably_damaging(1) TCGA-HJ-7597-01 4 151817609 151817609 C A LRBA Splice_Site p.X669_splice 0.17 TCGA-HJ-7597-01 4 155241940 155241940 A G DCHS2 Silent p.D1082D 0.14 TCGA-HJ-7597-01 4 164394816 164394816 C T TKTL2 Missense_Mutation p.R24Q 0.24 deleterious(0) probably_damaging(1) TCGA-HJ-7597-01 4 169173785 169173785 T - DDX60 Frame_Shift_Del p.T1194Pfs*8 0.21 TCGA-HJ-7597-01 4 174312470 174312470 T C SCRG1 Missense_Mutation p.I32M 0.34 tolerated_low_confidence(0.11) benign(0.003) TCGA-HJ-7597-01 4 25849258 25849258 T - SEL1L3 Frame_Shift_Del p.R131Gfs*15 0.37 TCGA-HJ-7597-01 4 3441262 3441262 C T RGS12 Missense_Mutation p.R1399W 0.19 tolerated_low_confidence(0.12) benign(0.109) TCGA-HJ-7597-01 4 54140037 54140037 C T SCFD2 Missense_Mutation p.A423T 0.38 tolerated(0.29) benign(0.04) TCGA-HJ-7597-01 4 56225592 56225592 G T SRD5A3 Nonsense_Mutation p.G101* 0.41 TCGA-HJ-7597-01 4 57221488 57221488 C T AASDH Silent p.A321A 0.29 TCGA-HJ-7597-01 4 68447135 68447135 A - STAP1 Frame_Shift_Del p.E161Rfs*12 0.20 TCGA-HJ-7597-01 4 69536157 69536157 A G UGT2B15 Silent p.A60A 0.06 TCGA-HJ-7597-01 4 79841787 79841787 G A PAQR3 Missense_Mutation p.A281V 0.32 tolerated(1) benign(0) TCGA-HJ-7597-01 4 80329257 80329257 G A GK2 Missense_Mutation p.A33V 0.35 tolerated(0.07) possibly_damaging(0.49) TCGA-HJ-7597-01 4 81866027 81866027 C T C4orf22 Silent p.A197A 0.16 TCGA-HJ-7597-01 4 82026979 82026979 C T PRKG2 Missense_Mutation p.R684Q 0.20 deleterious(0.01) probably_damaging(0.978) TCGA-HJ-7597-01 4 83785628 83785628 G A SEC31A Nonsense_Mutation p.R441* 0.32 TCGA-HJ-7597-01 4 84511411 84511411 T - AGPAT9 Frame_Shift_Del p.L236* 0.17 TCGA-HJ-7597-01 4 85708803 85708803 C T WDFY3 Missense_Mutation p.V1245I 0.24 tolerated(0.11) benign(0.384) TCGA-HJ-7597-01 4 87671685 87671685 C T PTPN13 Nonsense_Mutation p.R905* 0.27 TCGA-HJ-7597-01 4 89311998 89311998 G A HERC6 Missense_Mutation p.G211R 0.27 tolerated(0.05) probably_damaging(1) TCGA-HJ-7597-01 4 89912069 89912069 T C FAM13A Intron 0.24 TCGA-HJ-7597-01 4 941596 941596 C T TMEM175 Silent p.D23D 0.34 TCGA-HJ-7597-01 4 9784294 9784294 C T DRD5 Missense_Mutation p.A214V 0.08 tolerated(0.27) benign(0.02) TCGA-HJ-7597-01 4 99812387 99812387 C T EIF4E Splice_Site p.X74_splice 0.31 TCGA-HJ-7597-01 5 106717055 106717055 G A EFNA5 Silent p.A196A 0.10 TCGA-HJ-7597-01 5 108719145 108719145 G A PJA2 5'UTR 0.10 TCGA-HJ-7597-01 5 112214491 112214493 TCT - REEP5 In_Frame_Del p.K187del 0.16 TCGA-HJ-7597-01 5 1243678 1243678 G A SLC6A18 Silent p.S380S 0.25 TCGA-HJ-7597-01 5 132552921 132552921 C A FSTL4 Missense_Mutation p.Q536H 0.24 deleterious(0) possibly_damaging(0.897) TCGA-HJ-7597-01 5 137622195 137622195 C - CDC25C Frame_Shift_Del p.G384Afs*15 0.25 TCGA-HJ-7597-01 5 137677044 137677044 A T FAM53C Missense_Mutation p.E7V 0.06 deleterious(0) possibly_damaging(0.895) TCGA-HJ-7597-01 5 137682672 137682672 C T FAM53C 3'UTR 0.16 TCGA-HJ-7597-01 5 138209269 138209269 G A LRRTM2 Silent p.G327G 0.20 TCGA-HJ-7597-01 5 13871844 13871844 G A DNAH5 Missense_Mutation p.R1143C 0.17 benign(0) TCGA-HJ-7597-01 5 140186857 140186857 G A PCDHA4 Missense_Mutation p.G29S 0.28 tolerated_low_confidence(0.07) benign(0.187) TCGA-HJ-7597-01 5 140188890 140188890 G A PCDHA4 Silent p.A706A 0.05 TCGA-HJ-7597-01 5 140209767 140209767 C T PCDHA6 Silent p.N697N 0.20 TCGA-HJ-7597-01 5 140221046 140221046 G A PCDHA8 Missense_Mutation p.R47Q 0.34 deleterious_low_confidence(0) probably_damaging(0.945) TCGA-HJ-7597-01 5 140250122 140250122 G A PCDHA11 Silent p.A478A 0.21 TCGA-HJ-7597-01 5 140256792 140256792 G A PCDHA12 Missense_Mutation p.E579K 0.29 deleterious_low_confidence(0.02) benign(0.099) TCGA-HJ-7597-01 5 140475679 140475679 C A PCDHB2 Silent p.T435T 0.09 TCGA-HJ-7597-01 5 140553577 140553577 C T PCDHB7 Silent p.D387D 0.35 TCGA-HJ-7597-01 5 140699362 140699362 T - TAF7 Frame_Shift_Del p.T84Lfs*57 0.21 TCGA-HJ-7597-01 5 140774370 140774370 G A PCDHGA8 Missense_Mutation p.V664M 0.31 deleterious_low_confidence(0.03) possibly_damaging(0.694) TCGA-HJ-7597-01 5 141019880 141019880 G T FCHSD1 3'UTR 0.13 TCGA-HJ-7597-01 5 141325097 141325097 G A PCDH12 Missense_Mutation p.A1135V 0.24 tolerated(1) benign(0.001) TCGA-HJ-7597-01 5 14389425 14389425 G A TRIO Missense_Mutation p.V1326M 0.39 probably_damaging(0.995) TCGA-HJ-7597-01 5 147465986 147465986 A - SPINK5 Frame_Shift_Del p.G103Efs*43 0.19 TCGA-HJ-7597-01 5 149515165 149515165 C T PDGFRB Missense_Mutation p.R106H 0.29 tolerated(0.29) benign(0) TCGA-HJ-7597-01 5 153030051 153030051 C T GRIA1 Missense_Mutation p.R218C 0.19 deleterious(0.01) possibly_damaging(0.759) TCGA-HJ-7597-01 5 154272096 154272096 A T GEMIN5 Missense_Mutation p.I1204N 0.11 deleterious(0) possibly_damaging(0.602) TCGA-HJ-7597-01 5 159520771 159520771 G A PWWP2A Nonsense_Mutation p.R296* 0.22 TCGA-HJ-7597-01 5 162945289 162945289 A G MAT2B Missense_Mutation p.T309A 0.32 deleterious(0.03) probably_damaging(0.985) TCGA-HJ-7597-01 5 16701363 16701363 C T MYO10 Silent p.A1047A 0.25 TCGA-HJ-7597-01 5 167674742 167674742 C T TENM2 Silent p.D2266D 0.17 TCGA-HJ-7597-01 5 169108866 169108866 C T DOCK2 Missense_Mutation p.R197C 0.11 deleterious(0) probably_damaging(0.962) TCGA-HJ-7597-01 5 176793219 176793219 C T RGS14 Missense_Mutation p.R37C 0.18 deleterious(0.04) probably_damaging(0.931) TCGA-HJ-7597-01 5 176794793 176794793 G - RGS14 Frame_Shift_Del p.G237Afs*39 0.22 TCGA-HJ-7597-01 5 179263532 179263532 A G SQSTM1 Missense_Mutation p.N421S 0.24 tolerated(0.05) benign(0.061) TCGA-HJ-7597-01 5 179734305 179734305 T C GFPT2 Splice_Site p.X516_splice 0.30 TCGA-HJ-7597-01 5 179992921 179992921 A - CNOT6 Frame_Shift_Del p.K222Rfs*8 0.25 TCGA-HJ-7597-01 5 24593378 24593378 G A CDH10 Silent p.Y74Y 0.09 TCGA-HJ-7597-01 5 36037950 36037950 A G UGT3A2 Missense_Mutation p.L415P 0.07 deleterious(0) probably_damaging(0.912) TCGA-HJ-7597-01 5 38352305 38352305 C A EGFLAM Nonsense_Mutation p.C139* 0.24 TCGA-HJ-7597-01 5 45262136 45262136 G A HCN1 Nonsense_Mutation p.R854* 0.29 TCGA-HJ-7597-01 5 50689462 50689462 T - ISL1 3'UTR 0.34 TCGA-HJ-7597-01 5 55247869 55247869 T - IL6ST Frame_Shift_Del p.V530* 0.34 TCGA-HJ-7597-01 5 56208890 56208890 G A SETD9 Silent p.P173P 0.08 TCGA-HJ-7597-01 5 65320241 65320243 ATC - ERBB2IP In_Frame_Del p.S261del 0.34 TCGA-HJ-7597-01 5 70791221 70791221 A - BDP1 Frame_Shift_Del p.N597Ifs*16 0.22 TCGA-HJ-7597-01 5 71490625 71490625 G A MAP1B Silent p.A481A 0.15 TCGA-HJ-7597-01 5 74054702 74054702 G A GFM2 Silent p.Y92Y 0.13 TCGA-HJ-7597-01 5 76171212 76171212 G A S100Z Missense_Mutation p.D10N 0.13 tolerated(0.08) benign(0.021) TCGA-HJ-7597-01 5 78981139 78981139 C T PAPD4 3'UTR 0.36 TCGA-HJ-7597-01 5 79054697 79054697 G T CMYA5 Missense_Mutation p.E3744D 0.21 probably_damaging(0.996) TCGA-HJ-7597-01 5 80513294 80513294 T C RASGRF2 Splice_Site p.X1184_splice 0.40 TCGA-HJ-7597-01 5 9190505 9190505 G A SEMA5A Missense_Mutation p.H383Y 0.30 tolerated(0.05) possibly_damaging(0.77) TCGA-HJ-7597-01 6 107827633 107827633 T C SOBP Splice_Site p.X141_splice 0.30 TCGA-HJ-7597-01 6 108067962 108067962 C T SCML4 Missense_Mutation p.D140N 0.26 deleterious(0.01) probably_damaging(0.97) TCGA-HJ-7597-01 6 109764279 109764279 T C SMPD2 Missense_Mutation p.Y242H 0.20 deleterious(0) probably_damaging(0.981) TCGA-HJ-7597-01 6 112454679 112454679 C A LAMA4 Missense_Mutation p.A1190S 0.29 tolerated(0.79) benign(0.023) TCGA-HJ-7597-01 6 118953649 118953649 C T CEP85L Missense_Mutation p.G70S 0.22 deleterious(0.01) probably_damaging(1) TCGA-HJ-7597-01 6 133783519 133783519 G A EYA4 Missense_Mutation p.A162T 0.09 tolerated(0.14) benign(0.007) TCGA-HJ-7597-01 6 134312334 134312334 A G SLC2A12 Missense_Mutation p.C605R 0.20 deleterious_low_confidence(0.04) benign(0.002) TCGA-HJ-7597-01 6 139488147 139488147 G - HECA Frame_Shift_Del p.G335Dfs*27 0.17 TCGA-HJ-7597-01 6 14131847 14131847 G A CD83 Missense_Mutation p.A84T 0.11 tolerated(0.43) benign(0.132) TCGA-HJ-7597-01 6 144800995 144800995 G A UTRN Silent p.A1128A 0.16 TCGA-HJ-7597-01 6 150005576 150005579 CAGA - LATS1 Frame_Shift_Del p.S216Dfs*18 0.26 TCGA-HJ-7597-01 6 150141737 150141737 C T LRP11 Missense_Mutation p.R484H 0.36 deleterious(0.03) probably_damaging(0.999) TCGA-HJ-7597-01 6 151673902 151673902 A - AKAP12 Frame_Shift_Del p.N1461Mfs*26 0.13 TCGA-HJ-7597-01 6 160198409 160198409 C T ACAT2 Missense_Mutation p.A278V 0.17 tolerated(0.06) possibly_damaging(0.886) TCGA-HJ-7597-01 6 160769447 160769447 G A SLC22A3 5'UTR 0.38 TCGA-HJ-7597-01 6 169648825 169648825 G A THBS2 Missense_Mutation p.T99M 0.17 deleterious(0) probably_damaging(0.999) TCGA-HJ-7597-01 6 170159118 170159118 G A ERMARD Missense_Mutation p.V188I 0.18 tolerated(0.96) benign(0.023) TCGA-HJ-7597-01 6 18122356 18122356 G A NHLRC1 Missense_Mutation p.A161V 0.27 tolerated(0.6) benign(0.001) TCGA-HJ-7597-01 6 18237613 18237613 T - DEK Frame_Shift_Del p.E300Kfs*13 0.29 TCGA-HJ-7597-01 6 26092869 26092869 G T HFE Intron 0.12 TCGA-HJ-7597-01 6 26200079 26200079 C T HIST1H2BF Missense_Mutation p.A98V 0.18 deleterious_low_confidence(0.01) benign(0.252) TCGA-HJ-7597-01 6 26217297 26217297 A G HIST1H2AE Missense_Mutation p.H32R 0.22 deleterious_low_confidence(0.03) possibly_damaging(0.797) TCGA-HJ-7597-01 6 2675355 2675355 G A MYLK4 Nonsense_Mutation p.R349* 0.11 TCGA-HJ-7597-01 6 30856514 30856514 C T DDR1 Missense_Mutation p.P3L 0.19 deleterious_low_confidence(0.02) benign(0.001) TCGA-HJ-7597-01 6 30887544 30887544 G A VARS2 Missense_Mutation p.G392R 0.23 deleterious(0) possibly_damaging(0.8) TCGA-HJ-7597-01 6 31733790 31733790 A G VWA7 Missense_Mutation p.L790P 0.25 deleterious(0) probably_damaging(0.998) TCGA-HJ-7597-01 6 31807422 31807422 A G C6orf48 Silent p.G70G 0.27 TCGA-HJ-7597-01 6 32063535 32063535 G A TNXB Missense_Mutation p.R699W 0.19 possibly_damaging(0.656) TCGA-HJ-7597-01 6 32159934 32159934 G A GPSM3 Missense_Mutation p.R46C 0.17 deleterious_low_confidence(0.03) unknown(0) TCGA-HJ-7597-01 6 32187491 32187491 C T NOTCH4 Missense_Mutation p.C463Y 0.32 deleterious(0) probably_damaging(1) TCGA-HJ-7597-01 6 33623607 33623607 G A ITPR3 Silent p.K75K 0.24 TCGA-HJ-7597-01 6 34309655 34309655 C T NUDT3 Missense_Mutation p.R65H 0.10 deleterious(0) probably_damaging(0.999) TCGA-HJ-7597-01 6 35919042 35919042 G A SLC26A8 Silent p.D790D 0.10 TCGA-HJ-7597-01 6 36929281 36929281 C T PI16 Missense_Mutation p.L150F 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-HJ-7597-01 6 37336726 37336726 C T RNF8 Missense_Mutation p.A236V 0.09 tolerated(0.09) possibly_damaging(0.543) TCGA-HJ-7597-01 6 38875809 38875809 T C DNAH8 Silent p.P2925P 0.25 TCGA-HJ-7597-01 6 39325124 39325124 G A KIF6 Silent p.L703L 0.24 TCGA-HJ-7597-01 6 4073578 4073578 T G FAM217A Splice_Site p.X79_splice 0.15 TCGA-HJ-7597-01 6 4125528 4125528 C T ECI2 Missense_Mutation p.V251I 0.10 deleterious(0.01) probably_damaging(0.963) TCGA-HJ-7597-01 6 42905564 42905564 A C CNPY3 Missense_Mutation p.D161A 0.19 tolerated(0.07) possibly_damaging(0.582) TCGA-HJ-7597-01 6 46801266 46801266 A G MEP1A Missense_Mutation p.T534A 0.08 tolerated(0.37) benign(0.042) TCGA-HJ-7597-01 6 52546638 52546638 T - TMEM14A Frame_Shift_Del p.F34Lfs*20 0.14 TCGA-HJ-7597-01 6 53516564 53516566 CTT - KLHL31 In_Frame_Del p.K579del 0.15 TCGA-HJ-7597-01 6 53787696 53787696 G A LRRC1 3'UTR 0.56 TCGA-HJ-7597-01 6 56917622 56917622 G A KIAA1586 Missense_Mutation p.E109K 0.37 tolerated_low_confidence(0.76) benign(0) TCGA-HJ-7597-01 6 576834 576834 C T EXOC2 Missense_Mutation p.R414H 0.27 tolerated(0.12) probably_damaging(0.964) TCGA-HJ-7597-01 6 66204803 66204803 C G EYS Silent p.V167V 0.16 TCGA-HJ-7597-01 6 73905180 73905180 C T KCNQ5 3'UTR 0.27 TCGA-HJ-7597-01 6 79944353 79944353 C T HMGN3 5'UTR 0.28 TCGA-HJ-7597-01 7 101844792 101844792 A G CUX1 Missense_Mutation p.T750A 0.12 tolerated(0.6) unknown(0) TCGA-HJ-7597-01 7 101844962 101844962 C - CUX1 Frame_Shift_Del p.Q808Rfs*11 0.15 TCGA-HJ-7597-01 7 105108874 105108874 A G PUS7 Missense_Mutation p.Y479H 0.17 deleterious(0) probably_damaging(0.992) TCGA-HJ-7597-01 7 106508461 106508461 G A PIK3CG Missense_Mutation p.R152Q 0.25 tolerated(0.62) benign(0) TCGA-HJ-7597-01 7 113519997 113519997 C T PPP1R3A Missense_Mutation p.V384I 0.28 tolerated(0.42) benign(0) TCGA-HJ-7597-01 7 121003000 121003000 T A FAM3C Silent p.G111G 0.21 TCGA-HJ-7597-01 7 128142024 128142024 A T METTL2B 3'UTR 0.28 TCGA-HJ-7597-01 7 128394340 128394340 C T CALU Intron 0.16 TCGA-HJ-7597-01 7 129367082 129367082 G A NRF1 Missense_Mutation p.E409K 0.33 tolerated(0.05) benign(0.001) TCGA-HJ-7597-01 7 131825445 131825445 G A PLXNA4 Missense_Mutation p.T1784M 0.40 deleterious(0.03) probably_damaging(1) TCGA-HJ-7597-01 7 136700133 136700133 G T CHRM2 Missense_Mutation p.G174V 0.31 deleterious(0.03) possibly_damaging(0.908) TCGA-HJ-7597-01 7 138967781 138967781 A - UBN2 Frame_Shift_Del p.K712Rfs*45 0.40 TCGA-HJ-7597-01 7 139727098 139727098 C T PARP12 Missense_Mutation p.A536T 0.29 tolerated(0.11) benign(0.069) TCGA-HJ-7597-01 7 140035244 140035244 G A SLC37A3 Silent p.L485L 0.30 TCGA-HJ-7597-01 7 141416054 141416054 G T WEE2 Missense_Mutation p.G191V 0.23 tolerated(0.32) benign(0.077) TCGA-HJ-7597-01 7 141954898 141954898 C A PRSS58 Missense_Mutation p.W138L 0.24 deleterious(0) probably_damaging(0.947) TCGA-HJ-7597-01 7 1476465 1476465 C T MICALL2 Missense_Mutation p.R835Q 0.24 tolerated(1) benign(0.008) TCGA-HJ-7597-01 7 148701189 148701189 G A PDIA4 Silent p.D545D 0.13 TCGA-HJ-7597-01 7 150553856 150553856 G A AOC1 Missense_Mutation p.V100I 0.13 tolerated(0.3) benign(0.018) TCGA-HJ-7597-01 7 150774690 150774690 C T FASTK Intron 0.36 TCGA-HJ-7597-01 7 156798301 156798301 G A MNX1 Silent p.G373G 0.29 TCGA-HJ-7597-01 7 20418829 20418829 C T ITGB8 Missense_Mutation p.R182C 0.18 tolerated(0.13) benign(0.345) TCGA-HJ-7597-01 7 2697962 2697962 G A TTYH3 Silent p.P431P 0.27 TCGA-HJ-7597-01 7 34118621 34118621 C T BMPER Missense_Mutation p.R411W 0.20 deleterious(0) possibly_damaging(0.809) TCGA-HJ-7597-01 7 38389110 38389110 T C TRGV5 Missense_Mutation p.Y67C 0.21 deleterious(0) probably_damaging(1) TCGA-HJ-7597-01 7 38725645 38725645 G A FAM183B 5'UTR 0.31 TCGA-HJ-7597-01 7 44153382 44153382 G A AEBP1 Missense_Mutation p.R1000Q 0.32 tolerated(0.24) benign(0.131) TCGA-HJ-7597-01 7 44189378 44189378 G A GCK Silent p.C221C 0.11 TCGA-HJ-7597-01 7 4794120 4794120 C T FOXK1 Silent p.R259R 0.22 TCGA-HJ-7597-01 7 48046807 48046807 G C SUN3 Missense_Mutation p.N149K 0.27 deleterious(0.02) benign(0) TCGA-HJ-7597-01 7 50022936 50022936 A G ZPBP Splice_Site p.X321_splice 0.33 TCGA-HJ-7597-01 7 5352185 5352185 G A TNRC18 Silent p.A2779A 0.15 TCGA-HJ-7597-01 7 5662457 5662457 G A RNF216 3'UTR 0.29 TCGA-HJ-7597-01 7 6505908 6505908 G A KDELR2 Missense_Mutation p.P133L 0.24 deleterious(0) probably_damaging(0.996) TCGA-HJ-7597-01 7 72430648 72430648 C T TRIM74 Missense_Mutation p.M210I 0.52 tolerated(0.48) benign(0) TCGA-HJ-7597-01 7 72658718 72658718 G A GTF2IRD2P1 RNA 0.35 TCGA-HJ-7597-01 7 72925183 72925183 C A BAZ1B Splice_Site p.X36_splice 0.29 TCGA-HJ-7597-01 7 73790244 73790244 G A CLIP2 Missense_Mutation p.V505M 0.33 deleterious(0) possibly_damaging(0.726) TCGA-HJ-7597-01 7 79082533 79082533 C - MAGI2 Frame_Shift_Del p.G35Afs*13 0.20 TCGA-HJ-7597-01 7 82785657 82785657 C T PCLO Silent p.P100P 0.22 TCGA-HJ-7597-01 7 87144568 87144568 G A ABCB1 Silent p.Y1087Y 0.35 TCGA-HJ-7597-01 7 94953783 94953783 G A PON1 Missense_Mutation p.A2V 0.24 deleterious(0.01) possibly_damaging(0.551) TCGA-HJ-7597-01 7 98490105 98490105 G A TRRAP Missense_Mutation p.R107H 0.27 possibly_damaging(0.522) TCGA-HJ-7597-01 7 99717361 99717361 C T TAF6 Silent p.K3K 0.37 TCGA-HJ-7597-01 8 100050671 100050671 T - VPS13B Frame_Shift_Del p.L58* 0.28 TCGA-HJ-7597-01 8 101733841 101733841 C T PABPC1 5'UTR 0.33 TCGA-HJ-7597-01 8 107781751 107781751 T C ABRA Missense_Mutation p.Q223R 0.08 tolerated(0.67) benign(0.041) TCGA-HJ-7597-01 8 113529286 113529286 T G CSMD3 Missense_Mutation p.Q1578P 0.30 deleterious(0) probably_damaging(0.99) TCGA-HJ-7597-01 8 124121761 124121761 C T TBC1D31 Missense_Mutation p.A446V 0.31 deleterious(0.04) probably_damaging(0.958) TCGA-HJ-7597-01 8 128428462 128428462 C - POU5F1B Frame_Shift_Del p.P119Lfs*4 0.23 TCGA-HJ-7597-01 8 134145764 134145764 C - TG Frame_Shift_Del p.W2685Gfs*26 0.25 TCGA-HJ-7597-01 8 141551418 141551418 C T AGO2 Missense_Mutation p.A627T 0.21 deleterious(0) probably_damaging(0.995) TCGA-HJ-7597-01 8 142202491 142202491 T C DENND3 Silent p.I1067I 0.31 TCGA-HJ-7597-01 8 142225981 142225981 G A SLC45A4 Silent p.A555A 0.20 TCGA-HJ-7597-01 8 144332292 144332292 G A ZFP41 Silent p.G93G 0.33 TCGA-HJ-7597-01 8 144391652 144391652 C T TOP1MT Missense_Mutation p.A589T 0.16 tolerated(0.18) benign(0.385) TCGA-HJ-7597-01 8 144688646 144688646 G A PYCRL Silent p.G192G 0.13 TCGA-HJ-7597-01 8 144940460 144940460 A C EPPK1 Missense_Mutation p.L2321R 0.03 probably_damaging(0.984) TCGA-HJ-7597-01 8 145008551 145008551 C A PLEC Missense_Mutation p.K505N 0.11 unknown(0) TCGA-HJ-7597-01 8 145625454 145625454 A G CPSF1 Missense_Mutation p.I320T 0.10 deleterious(0) benign(0.217) TCGA-HJ-7597-01 8 22067038 22067038 G - BMP1 Frame_Shift_Del p.G887Vfs*70 0.26 TCGA-HJ-7597-01 8 22355520 22355520 C T PPP3CC Silent p.L127L 0.30 TCGA-HJ-7597-01 8 22428492 22428492 C T SORBS3 Missense_Mutation p.R501C 0.31 deleterious(0) probably_damaging(1) TCGA-HJ-7597-01 8 23291937 23291937 C T ENTPD4 Silent p.S505S 0.17 TCGA-HJ-7597-01 8 26722168 26722168 C - ADRA1A Frame_Shift_Del p.V107Cfs*22 0.24 TCGA-HJ-7597-01 8 2975988 2975988 G A CSMD1 Silent p.G2121G 0.30 TCGA-HJ-7597-01 8 38853067 38853067 G A TM2D2 Intron 0.24 TCGA-HJ-7597-01 8 41513163 41513163 G A ANK1 3'UTR 0.15 TCGA-HJ-7597-01 8 42611903 42611903 T A CHRNA6 Missense_Mutation p.T147S 0.33 tolerated(0.32) benign(0.055) TCGA-HJ-7597-01 8 54859256 54859256 C G RGS20 Missense_Mutation p.P231A 0.17 tolerated(0.22) benign(0.003) TCGA-HJ-7597-01 8 56663707 56663707 A G TMEM68 Missense_Mutation p.L168S 0.11 tolerated(0.08) possibly_damaging(0.828) TCGA-HJ-7597-01 8 57358422 57358422 C T PENK Missense_Mutation p.A31T 0.30 tolerated(0.07) possibly_damaging(0.775) TCGA-HJ-7597-01 8 72111656 72111656 C T EYA1 Splice_Site p.X567_splice 0.27 TCGA-HJ-7597-01 8 86121436 86121436 T C E2F5 Silent p.H225H 0.27 TCGA-HJ-7597-01 8 91657390 91657390 C T TMEM64 Silent p.A248A 0.08 TCGA-HJ-7597-01 8 95686611 95686611 A - ESRP1 Frame_Shift_Del p.N512Tfs*2 0.24 TCGA-HJ-7597-01 8 9609128 9609128 A G TNKS Missense_Mutation p.I948V 0.19 tolerated(1) benign(0.011) TCGA-HJ-7597-01 8 9609186 9609186 C A TNKS Missense_Mutation p.P967H 0.10 tolerated(0.1) probably_damaging(0.996) TCGA-HJ-7597-01 9 100124717 100124717 C T CCDC180 Missense_Mutation p.A1343V 0.22 tolerated(0.47) possibly_damaging(0.682) TCGA-HJ-7597-01 9 100416081 100416081 T C NCBP1 Missense_Mutation p.V354A 0.46 deleterious(0.01) probably_damaging(0.94) TCGA-HJ-7597-01 9 100617252 100617252 C T FOXE1 Silent p.G352G 0.16 TCGA-HJ-7597-01 9 103035301 103035301 G A INVS Missense_Mutation p.R576Q 0.18 tolerated(0.92) benign(0.036) TCGA-HJ-7597-01 9 1056568 1056568 C T DMRT2 Silent p.S327S 0.46 TCGA-HJ-7597-01 9 109690581 109690581 C T ZNF462 Missense_Mutation p.P1463L 0.54 probably_damaging(0.91) TCGA-HJ-7597-01 9 109773168 109773168 A G ZNF462 Missense_Mutation p.S2460G 0.19 benign(0.001) TCGA-HJ-7597-01 9 115422066 115422066 G A KIAA1958 Missense_Mutation p.R623Q 0.24 tolerated(0.32) benign(0.022) TCGA-HJ-7597-01 9 117063971 117063971 G A COL27A1 Missense_Mutation p.G1607S 0.16 unknown(0) TCGA-HJ-7597-01 9 117066886 117066886 A G COL27A1 Splice_Site p.X1625_splice 0.07 TCGA-HJ-7597-01 9 117848730 117848730 T G TNC Missense_Mutation p.E427A 0.21 tolerated(0.1) benign(0.063) TCGA-HJ-7597-01 9 125282057 125282057 G A OR1J4 Missense_Mutation p.C213Y 0.33 deleterious_low_confidence(0.04) benign(0.33) TCGA-HJ-7597-01 9 125759597 125759597 A - RABGAP1 Frame_Shift_Del p.K388Nfs*8 0.19 TCGA-HJ-7597-01 9 130027147 130027148 - T GARNL3 5'UTR 0.42 TCGA-HJ-7597-01 9 130251749 130251749 G T LRSAM1 Missense_Mutation p.E458D 0.14 deleterious(0.01) probably_damaging(0.997) TCGA-HJ-7597-01 9 130536608 130536608 G A SH2D3C Missense_Mutation p.T59M 0.31 deleterious(0.01) probably_damaging(0.911) TCGA-HJ-7597-01 9 130707096 130707096 G A FAM102A Silent p.I333I 0.48 TCGA-HJ-7597-01 9 130932369 130932369 C T CIZ1 Missense_Mutation p.R654H 0.26 deleterious(0.04) possibly_damaging(0.908) TCGA-HJ-7597-01 9 131151929 131151930 CT - URM1 3'UTR 0.12 TCGA-HJ-7597-01 9 131287597 131287597 G A GLE1 Missense_Mutation p.E342K 0.11 tolerated(0.14) benign(0.011) TCGA-HJ-7597-01 9 135942250 135942250 T C CEL Missense_Mutation p.L235P 0.38 deleterious(0.02) probably_damaging(0.998) TCGA-HJ-7597-01 9 135975778 135975778 C T RALGDS Intron 0.43 TCGA-HJ-7597-01 9 135978616 135978616 C T RALGDS Splice_Site p.X597_splice 0.17 TCGA-HJ-7597-01 9 136082718 136082718 C T OBP2B Missense_Mutation p.G95S 0.15 deleterious(0.02) probably_damaging(0.951) TCGA-HJ-7597-01 9 138713203 138713203 C T CAMSAP1 Missense_Mutation p.G1102R 0.19 tolerated(0.13) benign(0.009) TCGA-HJ-7597-01 9 139409965 139409965 A C NOTCH1 Missense_Mutation p.Y625D 0.45 deleterious(0) probably_damaging(0.989) TCGA-HJ-7597-01 9 139889995 139889995 G A CLIC3 Silent p.F56F 0.43 TCGA-HJ-7597-01 9 140140301 140140301 C T FAM166A Missense_Mutation p.A21T 0.12 tolerated(0.14) probably_damaging(0.999) TCGA-HJ-7597-01 9 140777379 140777379 C T CACNA1B Intron 0.15 TCGA-HJ-7597-01 9 14859191 14859191 G A FREM1 Silent p.F207F 0.30 TCGA-HJ-7597-01 9 17484353 17484353 A - CNTLN Frame_Shift_Del p.M1308* 0.27 TCGA-HJ-7597-01 9 21974720 21974721 - C CDKN2A Frame_Shift_Ins p.A36Gfs*8 0.42 TCGA-HJ-7597-01 9 2718442 2718442 G A KCNV2 Missense_Mutation p.D235N 0.29 tolerated(0.1) benign(0.017) TCGA-HJ-7597-01 9 2718573 2718573 G A KCNV2 Silent p.A278A 0.08 TCGA-HJ-7597-01 9 34372861 34372861 G - KIAA1161 5'UTR 0.08 TCGA-HJ-7597-01 9 35380501 35380501 C T UNC13B Missense_Mutation p.R665C 0.10 deleterious(0) probably_damaging(1) TCGA-HJ-7597-01 9 35558199 35558199 G T RUSC2 Missense_Mutation p.K1022N 0.09 deleterious(0.03) probably_damaging(0.996) TCGA-HJ-7597-01 9 405015 405015 T - DOCK8 Frame_Shift_Del p.F1113Lfs*2 0.39 TCGA-HJ-7597-01 9 6015587 6015587 T C RANBP6 Silent p.A7A 0.52 TCGA-HJ-7597-01 9 73151247 73151247 G A TRPM3 Silent p.C1582C 0.11 TCGA-HJ-7597-01 9 78953261 78953261 C T PCSK5 Missense_Mutation p.R1595C 0.18 deleterious(0.01) possibly_damaging(0.73) TCGA-HJ-7597-01 9 82267585 82267586 - C TLE4 Frame_Shift_Ins p.A159Cfs*7 0.25 TCGA-HJ-7597-01 9 84606266 84606266 G A SPATA31D1 Missense_Mutation p.R294H 0.23 tolerated(0.43) benign(0.001) TCGA-HJ-7597-01 9 8485953 8485953 G T PTPRD Missense_Mutation p.T955N 0.16 tolerated(0.06) probably_damaging(0.994) TCGA-HJ-7597-01 9 86504110 86504110 C T KIF27 Missense_Mutation p.R623Q 0.25 tolerated(0.07) benign(0.173) TCGA-HJ-7597-01 9 88204537 88204537 A G AGTPBP1 Silent p.D836D 0.25 TCGA-HJ-7597-01 9 88967763 88967763 G T ZCCHC6 Missense_Mutation p.P118T 0.26 tolerated_low_confidence(1) benign(0.009) TCGA-HJ-7597-01 9 94493360 94493360 G A ROR2 Missense_Mutation p.P339S 0.33 tolerated(0.22) benign(0.297) TCGA-HJ-7597-01 X 100183206 100183206 G A XKRX Nonsense_Mutation p.R30* 0.21 TCGA-HJ-7597-01 X 10180666 10180666 G A CLCN4 Missense_Mutation p.A517T 0.25 deleterious(0) probably_damaging(0.995) TCGA-HJ-7597-01 X 101858244 101858244 A T ARMCX5 Missense_Mutation p.Y392F 0.25 deleterious(0) possibly_damaging(0.673) TCGA-HJ-7597-01 X 102317840 102317840 A G BEX1 Silent p.F121F 0.18 TCGA-HJ-7597-01 X 102334165 102334165 G A NXF3 Silent p.N454N 0.36 TCGA-HJ-7597-01 X 10427780 10427780 G A MID1 Silent p.H451H 0.22 TCGA-HJ-7597-01 X 106109220 106109220 C T TBC1D8B Silent p.N873N 0.17 TCGA-HJ-7597-01 X 110951472 110951472 C A ALG13 Missense_Mutation p.L201M 0.30 tolerated_low_confidence(0.25) benign(0.365) TCGA-HJ-7597-01 X 11790306 11790307 - C MSL3 Frame_Shift_Ins p.G441Rfs*2 0.22 TCGA-HJ-7597-01 X 118109314 118109314 C T LONRF3 Missense_Mutation p.R191C 0.21 tolerated(0.06) probably_damaging(1) TCGA-HJ-7597-01 X 122599628 122599628 G A GRIA3 Missense_Mutation p.G810S 0.24 tolerated(0.74) benign(0.128) TCGA-HJ-7597-01 X 12734822 12734822 G A FRMPD4 Silent p.A748A 0.26 TCGA-HJ-7597-01 X 129149422 129149422 G - BCORL1 Frame_Shift_Del p.G893Afs*32 0.25 TCGA-HJ-7597-01 X 13778670 13778670 T C OFD1 Silent p.V697V 0.20 TCGA-HJ-7597-01 X 138643719 138643719 A - F9 Frame_Shift_Del p.K293Sfs*4 0.15 TCGA-HJ-7597-01 X 147030286 147030286 G A FMR1 Silent p.T607T 0.27 TCGA-HJ-7597-01 X 150868590 150868592 GAG - PRRG3 In_Frame_Del p.E45del 0.18 TCGA-HJ-7597-01 X 151092867 151092867 G T MAGEA4 Missense_Mutation p.R244M 0.08 deleterious(0) probably_damaging(0.951) TCGA-HJ-7597-01 X 151935285 151935285 A G MAGEA3 Silent p.S294S 0.33 TCGA-HJ-7597-01 X 15287958 15287958 G A ASB9 Silent p.P13P 0.21 TCGA-HJ-7597-01 X 153040418 153040418 C T PLXNB3 Missense_Mutation p.R1362C 0.27 deleterious(0) probably_damaging(0.997) TCGA-HJ-7597-01 X 153051514 153051514 G T IDH3G Intron 0.19 TCGA-HJ-7597-01 X 153128280 153128280 A G L1CAM Silent p.S1204S 0.36 TCGA-HJ-7597-01 X 153135593 153135593 G A L1CAM Silent p.G303G 0.31 TCGA-HJ-7597-01 X 153171222 153171222 G A AVPR2 Missense_Mutation p.V88M 0.33 deleterious(0) probably_damaging(1) TCGA-HJ-7597-01 X 153175255 153175255 C T ARHGAP4 Missense_Mutation p.R825Q 0.24 deleterious(0.02) probably_damaging(0.975) TCGA-HJ-7597-01 X 153227068 153227068 C T HCFC1 Missense_Mutation p.V277I 0.17 tolerated(0.1) probably_damaging(0.979) TCGA-HJ-7597-01 X 153282398 153282398 A G IRAK1 Splice_Site p.X343_splice 0.18 TCGA-HJ-7597-01 X 153691782 153691782 G A PLXNA3 Missense_Mutation p.V456M 0.06 deleterious(0) probably_damaging(0.965) TCGA-HJ-7597-01 X 18954173 18954173 C A PHKA2 Missense_Mutation p.K379N 0.08 tolerated(0.16) benign(0.285) TCGA-HJ-7597-01 X 19475045 19475045 C T MAP3K15 Silent p.A327A 0.52 TCGA-HJ-7597-01 X 24734570 24734570 C T POLA1 Missense_Mutation p.T200M 0.30 tolerated(0.14) benign(0.007) TCGA-HJ-7597-01 X 3227803 3227803 T - MXRA5 Frame_Shift_Del p.N2814Tfs*22 0.30 TCGA-HJ-7597-01 X 3235466 3235466 C T MXRA5 Missense_Mutation p.G2086S 0.50 deleterious(0) probably_damaging(1) TCGA-HJ-7597-01 X 37515027 37515027 C - LANCL3 Frame_Shift_Del p.L222* 0.29 TCGA-HJ-7597-01 X 38160591 38160591 C T RPGR Missense_Mutation p.R323H 0.22 probably_damaging(0.998) TCGA-HJ-7597-01 X 39937164 39937164 G - BCOR Frame_Shift_Del p.L7Cfs*9 0.17 TCGA-HJ-7597-01 X 41205860 41205860 C T DDX3X Missense_Mutation p.R534C 0.24 deleterious(0.02) benign(0.441) TCGA-HJ-7597-01 X 47100030 47100030 C T USP11 Silent p.S285S 0.26 TCGA-HJ-7597-01 X 48457775 48457775 G A WDR13 Missense_Mutation p.R106H 0.24 deleterious(0.02) possibly_damaging(0.62) TCGA-HJ-7597-01 X 48674585 48674585 A G HDAC6 Missense_Mutation p.M511V 0.25 tolerated(0.2) benign(0.034) TCGA-HJ-7597-01 X 48826158 48826158 C T KCND1 Missense_Mutation p.R174Q 0.24 tolerated(0.19) benign(0.087) TCGA-HJ-7597-01 X 50129458 50129458 T C DGKK RNA 0.12 TCGA-HJ-7597-01 X 53562434 53562434 C T HUWE1 Missense_Mutation p.R4187H 0.22 unknown(0) TCGA-HJ-7597-01 X 54028591 54028591 G A PHF8 Missense_Mutation p.R416C 0.24 deleterious(0.02) benign(0.006) TCGA-HJ-7597-01 X 67940852 67940852 C T STARD8 Silent p.Y712Y 0.22 TCGA-HJ-7597-01 X 68382735 68382735 C A PJA1 Missense_Mutation p.G116V 0.31 tolerated(0.72) benign(0.034) TCGA-HJ-7597-01 X 70321310 70321310 G A FOXO4 Silent p.T410T 0.17 TCGA-HJ-7597-01 X 70597472 70597472 T - TAF1 Frame_Shift_Del p.F266Lfs*25 0.12 TCGA-HJ-7597-01 X 74520740 74520740 A G UPRT Missense_Mutation p.I255V 0.26 tolerated(0.27) benign(0.006) TCGA-HJ-7597-01 X 86067874 86067874 A G DACH2 Missense_Mutation p.Q419R 0.12 tolerated(0.25) benign(0.119) TCGA-HJ-7597-01 X 9677345 9677345 G A TBL1X Missense_Mutation p.D432N 0.23 deleterious(0.02) possibly_damaging(0.798) TCGA-HU-8238-01 10 104536097 104536097 A C WBP1L Intron 0.21 TCGA-HU-8238-01 10 105006275 105006275 C T RPEL1 Silent p.G174G 0.20 TCGA-HU-8238-01 10 105218371 105218371 C T CALHM1 Silent p.P46P 0.41 TCGA-HU-8238-01 10 126673595 126673595 C T ZRANB1 3'UTR 0.38 TCGA-HU-8238-01 10 25887527 25887527 A C GPR158 Missense_Mutation p.N991T 0.20 tolerated(0.64) benign(0) TCGA-HU-8238-01 10 42832275 42832275 G T RP11-313J2.1 RNA 0.32 TCGA-HU-8238-01 10 4884669 4884669 C T AKR1E2 Silent p.T270T 0.34 TCGA-HU-8238-01 10 49667791 49667791 G T ARHGAP22 Missense_Mutation p.Q215K 0.39 deleterious(0) benign(0.437) TCGA-HU-8238-01 10 60562899 60562899 A C BICC1 Missense_Mutation p.K693T 0.33 deleterious(0.04) possibly_damaging(0.907) TCGA-HU-8238-01 10 63520673 63520673 C A C10orf107 Nonsense_Mutation p.S155* 0.19 TCGA-HU-8238-01 10 91353049 91353049 G A PANK1 Nonsense_Mutation p.R506* 0.21 TCGA-HU-8238-01 10 95930984 95930984 A C PLCE1 Missense_Mutation p.S514R 0.31 tolerated_low_confidence(0.06) possibly_damaging(0.548) TCGA-HU-8238-01 11 108593923 108593923 G A DDX10 Missense_Mutation p.E567K 0.29 tolerated(0.21) benign(0.004) TCGA-HU-8238-01 11 14902273 14902273 T A CYP2R1 Nonsense_Mutation p.R137* 0.27 TCGA-HU-8238-01 11 14907442 14907442 C A CYP2R1 Missense_Mutation p.G83C 0.17 deleterious(0.03) probably_damaging(1) TCGA-HU-8238-01 11 26552867 26552867 C T ANO3 Missense_Mutation p.R285C 0.21 deleterious(0) probably_damaging(0.999) TCGA-HU-8238-01 11 32410681 32410681 A G WT1 Missense_Mutation p.F493L 0.27 deleterious_low_confidence(0.01) probably_damaging(0.991) TCGA-HU-8238-01 11 34218973 34218973 G A ABTB2 Silent p.P381P 0.28 TCGA-HU-8238-01 11 5142385 5142385 G A OR52A4 RNA 0.28 TCGA-HU-8238-01 11 5686133 5686133 T G TRIM5 Missense_Mutation p.K463T 0.23 tolerated(0.23) possibly_damaging(0.859) TCGA-HU-8238-01 11 5878054 5878054 A C OR52E8 Missense_Mutation p.N293K 0.17 deleterious(0.01) probably_damaging(1) TCGA-HU-8238-01 11 60285648 60285648 T C MS4A13 Missense_Mutation p.V31A 0.29 deleterious(0) benign(0.075) TCGA-HU-8238-01 11 64564590 64564590 G A MAP4K2 Missense_Mutation p.R451W 0.26 deleterious(0) benign(0.007) TCGA-HU-8238-01 11 66100173 66100173 C T RIN1 Silent p.K642K 0.30 TCGA-HU-8238-01 11 95555096 95555096 C T CEP57 Missense_Mutation p.P254L 0.12 deleterious(0.01) benign(0.11) TCGA-HU-8238-01 12 10233843 10233843 T G CLEC1A Missense_Mutation p.K128N 0.31 deleterious(0.02) benign(0.297) TCGA-HU-8238-01 12 108045467 108045467 A C BTBD11 Missense_Mutation p.K1003T 0.18 tolerated(0.44) probably_damaging(0.957) TCGA-HU-8238-01 12 119540151 119540151 A C SRRM4 Missense_Mutation p.K81T 0.31 deleterious_low_confidence(0) unknown(0) TCGA-HU-8238-01 12 15262373 15262373 T G RERG Missense_Mutation p.S91R 0.37 deleterious(0) probably_damaging(1) TCGA-HU-8238-01 12 15636942 15636944 ATA - PTPRO In_Frame_Del p.N39del 0.39 TCGA-HU-8238-01 12 32138389 32138389 C T KIAA1551 Silent p.S1500S 0.18 TCGA-HU-8238-01 12 39763536 39763536 A T KIF21A Missense_Mutation p.L149I 0.23 deleterious(0.04) possibly_damaging(0.664) TCGA-HU-8238-01 12 52698793 52698793 G C KRT86 Silent p.L239L 0.17 TCGA-HU-8238-01 12 6128715 6128715 T A VWF Missense_Mutation p.E1290V 0.05 deleterious(0) possibly_damaging(0.791) TCGA-HU-8238-01 12 6153554 6153554 C T VWF Missense_Mutation p.R782Q 0.37 tolerated(0.07) probably_damaging(0.968) TCGA-HU-8238-01 12 64616011 64616011 C T C12orf66 Missense_Mutation p.E3K 0.17 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-HU-8238-01 12 64784245 64784245 C T C12orf56 Missense_Mutation p.R34H 0.13 deleterious(0) probably_damaging(0.997) TCGA-HU-8238-01 12 8048200 8048200 C G NANOGP1 RNA 0.42 TCGA-HU-8238-01 12 81741353 81741353 T A PPFIA2 Missense_Mutation p.S731C 0.17 deleterious(0.02) probably_damaging(0.997) TCGA-HU-8238-01 12 90020297 90020297 G C ATP2B1 Missense_Mutation p.P355A 0.21 tolerated(0.05) benign(0.027) TCGA-HU-8238-01 12 93196440 93196440 T C EEA1 Missense_Mutation p.K804E 0.17 tolerated(0.14) benign(0.003) TCGA-HU-8238-01 13 101890180 101890180 C T NALCN Missense_Mutation p.E454K 0.24 deleterious(0) probably_damaging(0.997) TCGA-HU-8238-01 13 109379787 109379787 G C MYO16 Splice_Site p.X100_splice 0.21 TCGA-HU-8238-01 13 23905359 23905359 C G SACS Missense_Mutation p.S4219T 0.21 benign(0.014) TCGA-HU-8238-01 13 42788687 42788687 T G DGKH Missense_Mutation p.L1020R 0.15 deleterious(0) possibly_damaging(0.714) TCGA-HU-8238-01 13 67800249 67800249 T G PCDH9 Missense_Mutation p.N775T 0.26 deleterious(0) probably_damaging(0.999) TCGA-HU-8238-01 13 79175453 79175453 G A POU4F1 3'UTR 0.22 TCGA-HU-8238-01 14 105611269 105611269 C T JAG2 Missense_Mutation p.V1028M 0.30 tolerated(0.25) benign(0.012) TCGA-HU-8238-01 14 24610392 24610392 A T EMC9 Missense_Mutation p.L41Q 0.19 deleterious(0.04) possibly_damaging(0.87) TCGA-HU-8238-01 14 36143480 36143480 C G RALGAPA1 Missense_Mutation p.R1102T 0.14 deleterious(0) probably_damaging(0.995) TCGA-HU-8238-01 14 38281541 38281541 T C TTC6 Missense_Mutation p.V1531A 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-HU-8238-01 14 44975154 44975154 A C FSCB Missense_Mutation p.L346R 0.19 tolerated(0.4) possibly_damaging(0.883) TCGA-HU-8238-01 14 53348104 53348104 T G FERMT2 Missense_Mutation p.T204P 0.27 tolerated(0.08) probably_damaging(0.998) TCGA-HU-8238-01 14 94394728 94394728 C T FAM181A Missense_Mutation p.R95C 0.21 deleterious(0) probably_damaging(1) TCGA-HU-8238-01 15 38786940 38786940 A T RASGRP1 Silent p.P634P 0.43 TCGA-HU-8238-01 15 41797472 41797472 A G LTK Missense_Mutation p.L620P 0.25 deleterious_low_confidence(0.04) probably_damaging(1) TCGA-HU-8238-01 15 56148344 56148344 T A NEDD4 Missense_Mutation p.Q684H 0.40 tolerated(0.19) probably_damaging(0.987) TCGA-HU-8238-01 15 65994118 65994118 A C DENND4A Silent p.T847T 0.25 TCGA-HU-8238-01 15 81601032 81601032 T G IL16 Missense_Mutation p.F1298V 0.25 deleterious(0.01) probably_damaging(0.943) TCGA-HU-8238-01 15 84685200 84685200 A C ADAMTSL3 Missense_Mutation p.T1408P 0.18 tolerated(0.07) benign(0.001) TCGA-HU-8238-01 15 99670022 99670022 G C SYNM Missense_Mutation p.S485T 0.23 tolerated(0.07) possibly_damaging(0.702) TCGA-HU-8238-01 16 14355205 14355205 C G MKL2 Missense_Mutation p.N1018K 0.34 tolerated(0.07) benign(0.096) TCGA-HU-8238-01 16 2164360 2164360 C T PKD1 Silent p.E888E 0.22 TCGA-HU-8238-01 16 23690389 23690389 G A PLK1 Missense_Mutation p.D46N 0.18 tolerated(0.1) possibly_damaging(0.619) TCGA-HU-8238-01 16 23768909 23768909 G A CHP2 3'UTR 0.31 TCGA-HU-8238-01 16 56926897 56926898 - C SLC12A3 Frame_Shift_Ins p.T828Hfs*20 0.27 TCGA-HU-8238-01 17 35454904 35454904 C G ACACA Missense_Mutation p.S2194T 0.22 tolerated(0.16) benign(0.006) TCGA-HU-8238-01 17 37809912 37809912 G A STARD3 Missense_Mutation p.R43Q 0.20 tolerated(0.12) benign(0.181) TCGA-HU-8238-01 17 47925364 47925364 C T TAC4 Missense_Mutation p.A6T 0.21 tolerated_low_confidence(0.76) unknown(0) TCGA-HU-8238-01 17 61988595 61988595 C T CSHL1 5'Flank 0.32 TCGA-HU-8238-01 17 7578175 7578175 A G TP53 Splice_Site p.X224_splice 0.28 TCGA-HU-8238-01 17 7736899 7736899 A C DNAH2 3'UTR 0.28 TCGA-HU-8238-01 18 34647383 34647383 A G KIAA1328 Silent p.Q369Q 0.09 TCGA-HU-8238-01 18 63430279 63430280 TG A CDH7 Nonsense_Mutation p.Y67* 0.12 TCGA-HU-8238-01 18 70416255 70416255 T G NETO1 3'UTR 0.26 TCGA-HU-8238-01 18 7231357 7231357 A G LRRC30 Missense_Mutation p.Q74R 0.30 tolerated(0.1) probably_damaging(0.974) TCGA-HU-8238-01 19 17534552 17534552 C T MVB12A Missense_Mutation p.S195F 0.24 tolerated(0.31) probably_damaging(0.958) TCGA-HU-8238-01 19 22156888 22156888 T G ZNF208 Missense_Mutation p.K316N 0.47 tolerated(0.71) benign(0.045) TCGA-HU-8238-01 19 37440849 37440849 T A ZNF568 Missense_Mutation p.L265H 0.25 deleterious(0) probably_damaging(1) TCGA-HU-8238-01 19 46113008 46113008 C T EML2 Silent p.V822V 0.23 TCGA-HU-8238-01 19 49878269 49878269 C T DKKL1 Missense_Mutation p.P238L 0.10 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-HU-8238-01 19 501811 501811 G A MADCAM1 Silent p.P270P 0.70 TCGA-HU-8238-01 19 51020968 51020968 C A LRRC4B Missense_Mutation p.A668S 0.25 tolerated_low_confidence(0.65) benign(0.004) TCGA-HU-8238-01 19 52375952 52375952 G A ZNF577 Missense_Mutation p.R431C 0.24 deleterious(0.03) benign(0.132) TCGA-HU-8238-01 19 54308652 54308652 G C NLRP12 Missense_Mutation p.L766V 0.24 deleterious(0.02) benign(0.176) TCGA-HU-8238-01 19 57641512 57641512 A C USP29 Missense_Mutation p.K490T 0.19 deleterious(0.02) benign(0.15) TCGA-HU-8238-01 19 7976324 7976324 G T MAP2K7 Nonsense_Mutation p.E314* 0.35 TCGA-HU-8238-01 1 10718606 10718606 G A CASZ1 Silent p.A456A 0.14 TCGA-HU-8238-01 1 12998626 12998626 T G PRAMEF6 Missense_Mutation p.E437A 0.35 deleterious(0.01) possibly_damaging(0.701) TCGA-HU-8238-01 1 144828571 144828571 G T NBPF9 Missense_Mutation p.E613D 0.08 deleterious(0.03) possibly_damaging(0.812) TCGA-HU-8238-01 1 146466042 146466042 A G NBPF12 Missense_Mutation p.D3306G 0.35 possibly_damaging(0.611) TCGA-HU-8238-01 1 152326340 152326340 G A FLG2 Missense_Mutation p.R1308C 0.24 benign(0.045) TCGA-HU-8238-01 1 152770365 152770365 A G LCE1D Missense_Mutation p.K32R 0.26 unknown(0) TCGA-HU-8238-01 1 152770399 152770399 C A LCE1D Missense_Mutation p.S43R 0.21 unknown(0) TCGA-HU-8238-01 1 157068978 157068978 T A ETV3L Missense_Mutation p.K84I 0.18 deleterious(0) probably_damaging(1) TCGA-HU-8238-01 1 196879548 196879548 A C CFHR4 Missense_Mutation p.S312R 0.37 tolerated(0.25) benign(0.369) TCGA-HU-8238-01 1 228494141 228494141 C A OBSCN Missense_Mutation p.Q4867K 0.47 benign(0.152) TCGA-HU-8238-01 1 228645822 228645822 T A HIST3H2BB 5'UTR 0.22 TCGA-HU-8238-01 1 231064702 231064702 C T TTC13 Missense_Mutation p.G480R 0.19 deleterious(0) probably_damaging(1) TCGA-HU-8238-01 1 240656343 240656343 G A GREM2 Nonsense_Mutation p.R145* 0.39 TCGA-HU-8238-01 1 37947235 37947235 A T ZC3H12A Missense_Mutation p.K206M 0.24 deleterious(0) probably_damaging(0.999) TCGA-HU-8238-01 1 75038015 75038015 C T C1orf173 Missense_Mutation p.E1127K 0.31 tolerated(0.19) benign(0.064) TCGA-HU-8238-01 1 82456569 82456569 A C LPHN2 Missense_Mutation p.S1318R 0.24 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-HU-8238-01 1 94140446 94140446 G A BCAR3 Missense_Mutation p.P14L 0.10 tolerated_low_confidence(0.1) benign(0.021) TCGA-HU-8238-01 20 17640894 17640894 C T RRBP1 Missense_Mutation p.D87N 0.46 deleterious(0) probably_damaging(0.961) TCGA-HU-8238-01 20 2779472 2779472 C A CPXM1 Missense_Mutation p.K80N 0.22 deleterious_low_confidence(0) possibly_damaging(0.859) TCGA-HU-8238-01 20 31756984 31756984 C T BPIFA2 Silent p.C11C 0.23 TCGA-HU-8238-01 20 36406108 36406108 G A CTNNBL1 Silent p.Q292Q 0.14 TCGA-HU-8238-01 20 40735467 40735467 G A PTPRT Missense_Mutation p.R1117C 0.18 deleterious(0) probably_damaging(0.999) TCGA-HU-8238-01 20 47858510 47858510 A C DDX27 Missense_Mutation p.K691Q 0.15 tolerated(0.07) benign(0.345) TCGA-HU-8238-01 20 62551098 62551098 G A DNAJC5 Intron 0.15 TCGA-HU-8238-01 21 10862898 10862898 A T IGHV1OR21-1 Missense_Mutation p.E65V 0.10 deleterious(0.01) possibly_damaging(0.748) TCGA-HU-8238-01 21 34926149 34926149 A G SON Missense_Mutation p.N1538D 0.33 benign(0.007) TCGA-HU-8238-01 22 21153514 21153514 G A PI4KA Missense_Mutation p.A624V 0.25 deleterious(0) probably_damaging(0.995) TCGA-HU-8238-01 22 23264806 23264806 C T IGLC7 Silent p.P14P 0.12 TCGA-HU-8238-01 22 46656446 46656446 G T PKDREJ Nonsense_Mutation p.S925* 0.28 TCGA-HU-8238-01 2 133403723 133403723 G A LYPD1 Silent p.N107N 0.26 TCGA-HU-8238-01 2 137814173 137814173 T C THSD7B Missense_Mutation p.V108A 0.14 tolerated(0.09) possibly_damaging(0.728) TCGA-HU-8238-01 2 168102105 168102105 A G XIRP2 Silent p.E1401E 0.52 TCGA-HU-8238-01 2 176965102 176965102 C T HOXD12 Silent p.D191D 0.42 TCGA-HU-8238-01 2 198950216 198950216 T C PLCL1 Missense_Mutation p.F659L 0.55 tolerated(0.31) benign(0.075) TCGA-HU-8238-01 2 223168938 223168938 G A CCDC140 Missense_Mutation p.R106Q 0.21 tolerated_low_confidence(0.32) benign(0.417) TCGA-HU-8238-01 2 223504302 223504302 C A FARSB Missense_Mutation p.C151F 0.30 deleterious(0) probably_damaging(0.999) TCGA-HU-8238-01 2 233243794 233243794 G C ALPP Missense_Mutation p.D64H 0.19 deleterious(0) probably_damaging(1) TCGA-HU-8238-01 2 238296530 238296530 C T COL6A3 Missense_Mutation p.R336Q 0.28 benign(0.153) TCGA-HU-8238-01 2 27684186 27684186 G T IFT172 Missense_Mutation p.L798M 0.21 tolerated(0.06) probably_damaging(0.935) TCGA-HU-8238-01 2 27684226 27684226 C G IFT172 Silent p.R784R 0.16 TCGA-HU-8238-01 2 28550283 28550283 G A BRE Missense_Mutation p.E411K 0.23 possibly_damaging(0.486) TCGA-HU-8238-01 2 31560527 31560527 C T XDH Missense_Mutation p.V1311M 0.19 tolerated(0.1) benign(0.069) TCGA-HU-8238-01 2 40342432 40342432 G A SLC8A1 Silent p.F961F 0.16 TCGA-HU-8238-01 2 89309731 89309731 C A IGKV1-9 Silent p.L33L 0.25 TCGA-HU-8238-01 3 101390048 101390048 T C ZBTB11 Missense_Mutation p.N235S 0.25 tolerated(0.68) benign(0.078) TCGA-HU-8238-01 3 108677942 108677942 T C MORC1 Missense_Mutation p.Q942R 0.39 deleterious(0.01) possibly_damaging(0.575) TCGA-HU-8238-01 3 112989707 112989716 GAGGGCATGT AA BOC Frame_Shift_Del p.E195Kfs*30 0.38 TCGA-HU-8238-01 3 119084171 119084171 G A ARHGAP31 Missense_Mutation p.V37I 0.31 deleterious(0) probably_damaging(0.998) TCGA-HU-8238-01 3 126708021 126708021 C T PLXNA1 Silent p.S195S 0.23 TCGA-HU-8238-01 3 127335862 127335862 G A MCM2 Silent p.A558A 0.30 TCGA-HU-8238-01 3 13896070 13896070 G A WNT7A Missense_Mutation p.R177W 0.27 deleterious(0) probably_damaging(0.999) TCGA-HU-8238-01 3 145913011 145913011 A G PLSCR4 Missense_Mutation p.L282S 0.25 deleterious(0.01) possibly_damaging(0.832) TCGA-HU-8238-01 3 178916891 178916891 G A PIK3CA Missense_Mutation p.R93Q 0.28 deleterious(0.01) probably_damaging(0.978) TCGA-HU-8238-01 3 35785415 35785415 G A ARPP21 Missense_Mutation p.A665T 0.26 tolerated(0.38) benign(0.004) TCGA-HU-8238-01 3 46713371 46713371 C T ALS2CL Intron 0.25 TCGA-HU-8238-01 3 48628165 48628165 C T COL7A1 Missense_Mutation p.R574Q 0.23 unknown(0) TCGA-HU-8238-01 3 98300285 98300285 C G CPOX Missense_Mutation p.E415Q 0.22 deleterious(0) probably_damaging(0.998) TCGA-HU-8238-01 3 99513274 99513274 G A COL8A1 Missense_Mutation p.A177T 0.21 tolerated(0.5) unknown(0) TCGA-HU-8238-01 4 102965034 102965034 G T BANK1 Missense_Mutation p.D647Y 0.35 deleterious(0) probably_damaging(0.999) TCGA-HU-8238-01 4 129120692 129120692 T A LARP1B Missense_Mutation p.L701H 0.31 deleterious(0) probably_damaging(0.998) TCGA-HU-8238-01 4 138452262 138452262 T G PCDH18 Missense_Mutation p.Q327H 0.38 deleterious(0.01) probably_damaging(0.996) TCGA-HU-8238-01 4 166405611 166405611 C G CPE Silent p.A276A 0.29 TCGA-HU-8238-01 5 107216863 107216863 G A FBXL17 Nonsense_Mutation p.R614* 0.37 TCGA-HU-8238-01 5 176867835 176867835 C T GRK6 Silent p.N513N 0.32 TCGA-HU-8238-01 5 33951510 33951510 T C SLC45A2 Intron 0.26 TCGA-HU-8238-01 5 40692214 40692214 C G PTGER4 Missense_Mutation p.L401V 0.66 tolerated(0.15) benign(0.021) TCGA-HU-8238-01 5 7866835 7866835 T A FASTKD3 Silent p.S454S 0.43 TCGA-HU-8238-01 5 96127839 96127839 G A ERAP1 Silent p.S415S 0.34 TCGA-HU-8238-01 5 96503116 96503116 A C RIOK2 Intron 0.35 TCGA-HU-8238-01 6 107391627 107391627 G A BEND3 Silent p.I256I 0.29 TCGA-HU-8238-01 6 116757745 116757745 G T DSE Missense_Mutation p.G705V 0.25 tolerated_low_confidence(0.06) benign(0.124) TCGA-HU-8238-01 6 121491635 121491635 A G TBC1D32 Intron 0.47 TCGA-HU-8238-01 6 139498117 139498117 G A HECA Missense_Mutation p.D503N 0.20 tolerated(0.05) possibly_damaging(0.807) TCGA-HU-8238-01 6 155575620 155575620 C T TIAM2 Missense_Mutation p.H1461Y 0.29 deleterious(0.04) possibly_damaging(0.487) TCGA-HU-8238-01 6 163899841 163899841 T A QKI Silent p.P105P 0.19 TCGA-HU-8238-01 6 165806269 165806269 A C PDE10A Missense_Mutation p.L508V 0.22 tolerated(0.06) benign(0.005) TCGA-HU-8238-01 6 38690689 38690689 G A DNAH8 5'Flank 0.57 TCGA-HU-8238-01 6 41739091 41739091 C T FRS3 Missense_Mutation p.A249T 0.60 tolerated(0.21) benign(0.023) TCGA-HU-8238-01 6 49660317 49660317 T G CRISP2 3'UTR 0.26 TCGA-HU-8238-01 6 56458483 56458483 C T DST Missense_Mutation p.R1612Q 0.53 possibly_damaging(0.883) TCGA-HU-8238-01 6 56458740 56458740 C T DST Nonsense_Mutation p.W1526* 0.30 TCGA-HU-8238-01 6 88317423 88317423 C T ORC3 Nonsense_Mutation p.Q154* 0.31 TCGA-HU-8238-01 7 100276157 100276157 C T GNB2 Missense_Mutation p.S279L 0.37 deleterious(0) probably_damaging(1) TCGA-HU-8238-01 7 116436061 116436061 G A MET Silent p.V1370V 0.15 TCGA-HU-8238-01 7 116861974 116861974 C G ST7 Intron 0.09 TCGA-HU-8238-01 7 119915204 119915204 G - KCND2 Frame_Shift_Del p.A174Pfs*65 0.11 TCGA-HU-8238-01 7 120387754 120387754 A G KCND2 Missense_Mutation p.K579E 0.22 deleterious_low_confidence(0.01) benign(0.265) TCGA-HU-8238-01 7 123296211 123296211 G A LMOD2 Missense_Mutation p.S65N 0.33 tolerated(0.6) probably_damaging(0.998) TCGA-HU-8238-01 7 130418038 130418038 G A KLF14 Missense_Mutation p.R275C 0.33 deleterious(0) probably_damaging(0.997) TCGA-HU-8238-01 7 151483560 151483560 C T PRKAG2 Missense_Mutation p.R61Q 0.38 tolerated_low_confidence(0.26) benign(0.019) TCGA-HU-8238-01 7 154593099 154593099 A C DPP6 Missense_Mutation p.K445T 0.36 tolerated(0.25) benign(0.329) TCGA-HU-8238-01 7 7612769 7612769 C G MIOS Missense_Mutation p.F221L 0.17 tolerated(0.46) benign(0.07) TCGA-HU-8238-01 7 82997138 82997138 C A SEMA3E Missense_Mutation p.A698S 0.30 tolerated(0.35) benign(0.002) TCGA-HU-8238-01 7 92732181 92732181 C T SAMD9 Missense_Mutation p.R1077Q 0.32 deleterious(0.03) benign(0.156) TCGA-HU-8238-01 7 98519394 98519394 C T TRRAP Missense_Mutation p.R881C 0.27 possibly_damaging(0.459) TCGA-HU-8238-01 8 104898169 104898169 T G RIMS2 Missense_Mutation p.L448V 0.15 tolerated_low_confidence(0.12) benign(0.007) TCGA-HU-8238-01 8 122641302 122641302 T C HAS2 Silent p.Q93Q 0.21 TCGA-HU-8238-01 8 139729080 139729080 T A COL22A1 Silent p.R796R 0.33 TCGA-HU-8238-01 8 145535203 145535203 G A HSF1 Silent p.L213L 0.35 TCGA-HU-8238-01 8 22442838 22442838 C A PDLIM2 Missense_Mutation p.Q406K 0.40 deleterious(0.02) possibly_damaging(0.883) TCGA-HU-8238-01 8 48626098 48626098 C G SPIDR Missense_Mutation p.L746V 0.23 tolerated(0.15) benign(0.067) TCGA-HU-8238-01 8 7320246 7320246 C T SPAG11B Missense_Mutation p.R66H 0.14 deleterious(0.04) probably_damaging(0.957) TCGA-HU-8238-01 8 88365898 88365898 T C CNBD1 Missense_Mutation p.L396P 0.27 deleterious(0) probably_damaging(0.999) TCGA-HU-8238-01 9 116357985 116357985 G A RGS3 Silent p.K1117K 0.23 TCGA-HU-8238-01 9 125512614 125512614 T A OR1L6 Missense_Mutation p.L163H 0.40 deleterious(0) probably_damaging(0.992) TCGA-HU-8238-01 9 131030412 131030412 G C GOLGA2 Missense_Mutation p.L114V 0.13 tolerated(0.52) benign(0.017) TCGA-HU-8238-01 9 131256995 131256995 C T ODF2 Intron 0.12 TCGA-HU-8238-01 9 134404552 134404552 G A UCK1 Silent p.F162F 0.56 TCGA-HU-8238-01 9 140034176 140034176 G A GRIN1 Missense_Mutation p.E80K 0.20 tolerated(0.3) benign(0.407) TCGA-HU-8238-01 9 18684762 18684762 A T ADAMTSL1 Missense_Mutation p.E513V 0.33 deleterious(0) probably_damaging(0.999) TCGA-HU-8238-01 9 34290260 34290260 A C KIF24 Missense_Mutation p.S347A 0.25 deleterious(0.02) benign(0.11) TCGA-HU-8238-01 9 34977148 34977148 C A KIAA1045 Silent p.G306G 0.15 TCGA-HU-8238-01 9 4841245 4841245 G A RCL1 Missense_Mutation p.V200M 0.35 deleterious(0.01) probably_damaging(0.993) TCGA-HU-8238-01 9 86587013 86587013 C G HNRNPK Missense_Mutation p.R246P 0.40 deleterious(0.02) possibly_damaging(0.652) TCGA-HU-8238-01 9 91616511 91616511 C T S1PR3 Silent p.I132I 0.22 TCGA-HU-8238-01 X 106844900 106844900 C T FRMPD3 Nonsense_Mutation p.R1244* 0.32 TCGA-HU-8238-01 X 34962738 34962745 TAAGCAAG - FAM47B Frame_Shift_Del p.L597Rfs*9 0.39 TCGA-HU-8238-01 X 48244835 48244835 G A SSX4 Missense_Mutation p.A76T 0.23 tolerated(0.18) benign(0.082) TCGA-HU-8238-01 X 64722780 64722780 C G ZC3H12B Silent p.P734P 0.58 TCGA-HU-8238-01 X 71359741 71359741 G T NHSL2 Silent p.L781L 0.50 TCGA-HU-8238-01 X 75650126 75650126 T G MAGEE1 Silent p.A601A 0.39 TCGA-HU-8243-01 10 104142019 104142019 G A GBF1 Missense_Mutation p.E1836K 0.23 deleterious_low_confidence(0.01) probably_damaging(0.967) TCGA-HU-8243-01 10 104569654 104569654 C G WBP1L Missense_Mutation p.F66L 0.31 tolerated(0.07) benign(0.248) TCGA-HU-8243-01 10 118423577 118423577 G A C10orf82 3'UTR 0.32 TCGA-HU-8243-01 10 124457437 124457437 G A C10orf120 Missense_Mutation p.R274W 0.18 deleterious(0) probably_damaging(0.999) TCGA-HU-8243-01 10 13275754 13275754 C T UCMA Silent p.A35A 0.30 TCGA-HU-8243-01 11 108361830 108361830 G A KDELC2 Silent p.V89V 0.19 TCGA-HU-8243-01 11 116658317 116658317 C A ZNF259 Nonsense_Mutation p.E72* 0.25 TCGA-HU-8243-01 11 118983467 118983467 C T C2CD2L Missense_Mutation p.R424C 0.31 deleterious(0) probably_damaging(0.919) TCGA-HU-8243-01 11 125875734 125875734 G T CDON Missense_Mutation p.P591T 0.38 tolerated(0.07) probably_damaging(0.973) TCGA-HU-8243-01 11 18637552 18637552 T C SPTY2D1 Missense_Mutation p.K90R 0.33 deleterious(0) benign(0.292) TCGA-HU-8243-01 11 31327862 31327862 G T DCDC1 Missense_Mutation p.Q170K 0.22 tolerated(0.14) benign(0.392) TCGA-HU-8243-01 11 32460400 32460400 A G WT1 5'Flank 0.24 TCGA-HU-8243-01 11 56510534 56510534 C T OR9G4 Missense_Mutation p.A252T 0.23 deleterious(0.04) benign(0.303) TCGA-HU-8243-01 11 5653909 5653909 C A TRIM34 Nonsense_Mutation p.C116* 0.18 TCGA-HU-8243-01 11 5878346 5878346 G A OR52E8 Missense_Mutation p.A196V 0.08 tolerated(0.06) benign(0.088) TCGA-HU-8243-01 11 59376145 59376145 G A OSBP Missense_Mutation p.R212W 0.42 deleterious(0) probably_damaging(0.958) TCGA-HU-8243-01 11 60559761 60559761 G A MS4A10 Silent p.A109A 0.20 TCGA-HU-8243-01 11 61960896 61960896 G A SCGB1D1 Missense_Mutation p.R90H 0.36 deleterious_low_confidence(0.05) benign(0.363) TCGA-HU-8243-01 11 6291352 6291352 G A CCKBR Silent p.V146V 0.60 TCGA-HU-8243-01 11 64410011 64410011 C T NRXN2 Intron 0.15 TCGA-HU-8243-01 11 6789246 6789246 T C OR2AG2 Missense_Mutation p.T315A 0.33 deleterious_low_confidence(0.03) benign(0.097) TCGA-HU-8243-01 11 68772961 68772961 C A MRGPRF Nonsense_Mutation p.E273* 0.45 TCGA-HU-8243-01 11 77690106 77690106 G A INTS4 Missense_Mutation p.A136V 0.42 tolerated(0.68) benign(0) TCGA-HU-8243-01 11 9457876 9457878 TCA - IPO7 In_Frame_Del p.I746del 0.33 TCGA-HU-8243-01 12 1005523 1005523 G A WNK1 Missense_Mutation p.R1957H 0.49 deleterious(0) probably_damaging(0.999) TCGA-HU-8243-01 12 120882752 120882752 T C TRIAP1 Missense_Mutation p.I52V 0.21 tolerated(0.16) benign(0.015) TCGA-HU-8243-01 12 130897281 130897281 G A RIMBP2 Missense_Mutation p.R902W 0.53 deleterious(0) probably_damaging(1) TCGA-HU-8243-01 12 45742406 45742427 CTCCATGATGTAAGTTAAAAGG - ANO6 Splice_Site p.X268_splice 0.29 TCGA-HU-8243-01 12 52754623 52754623 G A KRT85 3'UTR 0.17 TCGA-HU-8243-01 12 6436699 6436699 G A PLEKHG6 Silent p.P650P 0.45 TCGA-HU-8243-01 12 76780411 76780411 C T OSBPL8 Missense_Mutation p.R461H 0.14 deleterious(0) probably_damaging(1) TCGA-HU-8243-01 12 93169722 93169722 C G EEA1 3'UTR 0.09 TCGA-HU-8243-01 13 23905608 23905608 A C SACS Missense_Mutation p.L4136R 0.05 probably_damaging(0.996) TCGA-HU-8243-01 13 39262114 39262114 C T FREM2 Silent p.P211P 0.17 TCGA-HU-8243-01 13 40297472 40297472 C G COG6 Missense_Mutation p.I529M 0.11 tolerated(0.16) possibly_damaging(0.718) TCGA-HU-8243-01 13 88329187 88329187 A G SLITRK5 Missense_Mutation p.N515S 0.10 deleterious(0) probably_damaging(0.999) TCGA-HU-8243-01 13 92560278 92560278 T A GPC5 Missense_Mutation p.N456K 0.60 tolerated(0.08) possibly_damaging(0.845) TCGA-HU-8243-01 14 105237106 105237106 T C AKT1 Missense_Mutation p.I447V 0.28 tolerated(1) probably_damaging(0.963) TCGA-HU-8243-01 14 22265922 22265922 T C TRAV8-1 Missense_Mutation p.Y69H 0.23 tolerated(0.31) benign(0.099) TCGA-HU-8243-01 14 23564606 23564606 C A C14orf119 5'UTR 0.20 TCGA-HU-8243-01 14 52171626 52171626 C A FRMD6 Missense_Mutation p.F177L 0.19 deleterious(0.03) benign(0.012) TCGA-HU-8243-01 14 65207906 65207906 A G PLEKHG3 Silent p.P501P 0.16 TCGA-HU-8243-01 14 70712623 70712623 G C ADAM21P1 RNA 0.11 TCGA-HU-8243-01 14 75551205 75551205 G A NEK9 3'UTR 0.32 TCGA-HU-8243-01 14 91642287 91642287 G A C14orf159 Missense_Mutation p.G206E 0.30 deleterious(0) probably_damaging(0.99) TCGA-HU-8243-01 14 96706782 96706782 C T BDKRB2 Silent p.N39N 0.41 TCGA-HU-8243-01 15 24921489 24921489 A G NPAP1 Missense_Mutation p.R159G 0.18 tolerated(0.35) possibly_damaging(0.699) TCGA-HU-8243-01 15 40284379 40284379 G C EIF2AK4 Missense_Mutation p.D879H 0.17 tolerated(0.07) benign(0.016) TCGA-HU-8243-01 15 48536975 48536975 C T SLC12A1 Silent p.T442T 0.45 TCGA-HU-8243-01 15 51742428 51742428 C T DMXL2 Silent p.Q2934Q 0.20 TCGA-HU-8243-01 15 53889438 53889438 C T WDR72 Missense_Mutation p.E996K 0.21 deleterious(0) probably_damaging(0.999) TCGA-HU-8243-01 16 23713854 23713854 C T ERN2 Missense_Mutation p.R361H 0.14 deleterious(0.04) probably_damaging(0.981) TCGA-HU-8243-01 16 62055135 62055135 C T CDH8 Missense_Mutation p.R58H 0.47 deleterious(0) benign(0.277) TCGA-HU-8243-01 16 70359577 70359579 TTC - DDX19B In_Frame_Del p.V198_R199delinsG 0.44 TCGA-HU-8243-01 16 71712742 71712742 C T PHLPP2 Missense_Mutation p.R395K 0.20 tolerated(1) benign(0) TCGA-HU-8243-01 17 21319795 21319795 C T KCNJ12 Silent p.L381L 0.16 TCGA-HU-8243-01 17 41209095 41209095 G A BRCA1 Nonsense_Mutation p.R1772* 0.23 TCGA-HU-8243-01 17 42478511 42478511 G A GPATCH8 Missense_Mutation p.L312F 0.24 deleterious(0) probably_damaging(0.999) TCGA-HU-8243-01 17 55709204 55709204 G C MSI2 Intron 0.23 TCGA-HU-8243-01 17 61988514 61988514 C T CSHL1 Intron 0.21 TCGA-HU-8243-01 17 63200383 63200383 C T RGS9 Silent p.D389D 0.32 TCGA-HU-8243-01 17 67151160 67151161 - T ABCA10 Frame_Shift_Ins p.G1232Rfs*2 0.36 TCGA-HU-8243-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.55 deleterious(0) probably_damaging(1) TCGA-HU-8243-01 17 76415748 76415748 G A PGS1 3'UTR 0.15 TCGA-HU-8243-01 18 25532229 25532229 A T CDH2 Nonsense_Mutation p.L870* 0.08 TCGA-HU-8243-01 18 43316452 43316452 C A SLC14A1 Missense_Mutation p.L224I 0.15 deleterious(0.03) benign(0.139) TCGA-HU-8243-01 18 48473692 48473692 C T ME2 3'UTR 0.25 TCGA-HU-8243-01 18 48591888 48591888 G T SMAD4 Missense_Mutation p.D351Y 0.40 deleterious(0) probably_damaging(1) TCGA-HU-8243-01 18 9211713 9211713 C G ANKRD12 Missense_Mutation p.R195G 0.10 deleterious(0) probably_damaging(1) TCGA-HU-8243-01 19 17746834 17746834 G T UNC13A Missense_Mutation p.Q1072K 0.12 deleterious(0.01) benign(0.208) TCGA-HU-8243-01 19 18376067 18376067 C T KIAA1683 Silent p.Q761Q 0.09 TCGA-HU-8243-01 19 22157559 22157559 C T ZNF208 Missense_Mutation p.D93N 0.11 tolerated(0.16) benign(0.073) TCGA-HU-8243-01 19 3595741 3595741 C T TBXA2R Missense_Mutation p.R326Q 0.82 tolerated(0.14) possibly_damaging(0.776) TCGA-HU-8243-01 19 38056530 38056530 G C ZNF571 Missense_Mutation p.T267S 0.30 tolerated(0.18) possibly_damaging(0.871) TCGA-HU-8243-01 19 39995913 39995913 C T DLL3 Silent p.Y305Y 0.21 TCGA-HU-8243-01 19 41352824 41352824 A T CYP2A6 Missense_Mutation p.S263T 0.26 benign(0.231) TCGA-HU-8243-01 19 41388043 41388043 G T CYP2A7 Missense_Mutation p.Q25K 0.22 tolerated(0.77) benign(0.001) TCGA-HU-8243-01 19 41634070 41634070 G C CYP2F1 3'UTR 0.38 TCGA-HU-8243-01 19 43093141 43093141 T C CEACAM8 Silent p.A251A 0.27 TCGA-HU-8243-01 19 46997202 46997202 C T PNMAL2 Silent p.S507S 0.31 TCGA-HU-8243-01 19 58596563 58596563 G A ZSCAN18 Missense_Mutation p.A397V 0.27 tolerated(0.13) benign(0.033) TCGA-HU-8243-01 1 110211979 110211979 G A GSTM2 Missense_Mutation p.R82H 0.36 deleterious(0.02) possibly_damaging(0.583) TCGA-HU-8243-01 1 154407589 154407589 T G IL6R Missense_Mutation p.L255R 0.12 deleterious(0) probably_damaging(0.971) TCGA-HU-8243-01 1 158064879 158064879 G A KIRREL Missense_Mutation p.R748Q 0.36 tolerated(0.13) probably_damaging(0.951) TCGA-HU-8243-01 1 158724691 158724691 C T OR6K6 Missense_Mutation p.T29M 0.39 tolerated(0.59) benign(0) TCGA-HU-8243-01 1 160146308 160146308 G A ATP1A4 Missense_Mutation p.D836N 0.56 deleterious(0.04) probably_damaging(0.998) TCGA-HU-8243-01 1 168074014 168074014 G T GPR161 Silent p.G45G 0.46 TCGA-HU-8243-01 1 196659357 196659357 T C CFH Missense_Mutation p.C442R 0.10 deleterious(0) probably_damaging(1) TCGA-HU-8243-01 1 196920153 196920153 C G CFHR2 Missense_Mutation p.S142C 0.15 deleterious(0.04) possibly_damaging(0.628) TCGA-HU-8243-01 1 235628860 235628860 A C B3GALNT2 Intron 0.33 TCGA-HU-8243-01 1 24996743 24996743 C A SRRM1 Missense_Mutation p.N779K 0.48 unknown(0) TCGA-HU-8243-01 1 36785295 36785295 C T SH3D21 Missense_Mutation p.P344L 0.27 tolerated(1) benign(0.003) TCGA-HU-8243-01 1 37346293 37346293 G A GRIK3 Silent p.L164L 0.39 TCGA-HU-8243-01 1 40433537 40433537 C T MFSD2A Missense_Mutation p.A399V 0.24 tolerated(1) benign(0.001) TCGA-HU-8243-01 1 55457702 55457702 G A TMEM61 Missense_Mutation p.V187I 0.47 tolerated(1) benign(0.001) TCGA-HU-8243-01 1 59042367 59042367 G A TACSTD2 Silent p.I154I 0.20 TCGA-HU-8243-01 20 30584668 30584668 G A XKR7 Missense_Mutation p.R383H 0.22 deleterious(0.02) possibly_damaging(0.828) TCGA-HU-8243-01 20 31644485 31644485 G A BPIFB3 Missense_Mutation p.V88I 0.14 tolerated(0.25) benign(0.034) TCGA-HU-8243-01 20 35632270 35632270 C G RBL1 Splice_Site p.X958_splice 0.10 TCGA-HU-8243-01 20 44987061 44987061 T A SLC35C2 Missense_Mutation p.I29F 0.19 deleterious(0) benign(0.224) TCGA-HU-8243-01 20 55909089 55909089 G A SPO11 Missense_Mutation p.V150I 0.06 tolerated(0.09) possibly_damaging(0.826) TCGA-HU-8243-01 20 58495501 58495501 C T SYCP2 Silent p.L70L 0.21 TCGA-HU-8243-01 21 19653455 19653455 C T TMPRSS15 Missense_Mutation p.R857Q 0.43 tolerated(0.2) benign(0.07) TCGA-HU-8243-01 21 31066220 31066220 C T GRIK1 Missense_Mutation p.R94Q 0.25 tolerated(0.15) possibly_damaging(0.71) TCGA-HU-8243-01 21 34889792 34889792 T A GART Missense_Mutation p.D609V 0.11 deleterious(0) probably_damaging(1) TCGA-HU-8243-01 22 18463712 18463712 T C MICAL3 Intron 0.24 TCGA-HU-8243-01 22 20079078 20079078 C T DGCR8 Missense_Mutation p.A476V 0.29 deleterious(0.03) possibly_damaging(0.453) TCGA-HU-8243-01 22 30209531 30209531 C T ASCC2 Missense_Mutation p.E241K 0.11 deleterious(0.01) possibly_damaging(0.492) TCGA-HU-8243-01 2 125405450 125405450 G C CNTNAP5 Missense_Mutation p.Q663H 0.15 deleterious(0.02) probably_damaging(0.998) TCGA-HU-8243-01 2 162274733 162274733 C T TBR1 Missense_Mutation p.P290L 0.21 deleterious(0) probably_damaging(0.996) TCGA-HU-8243-01 2 163302875 163302875 A G KCNH7 Missense_Mutation p.Y403H 0.15 deleterious(0.04) probably_damaging(0.996) TCGA-HU-8243-01 2 201357899 201357899 T C KCTD18 Missense_Mutation p.K254E 0.41 deleterious_low_confidence(0.02) possibly_damaging(0.637) TCGA-HU-8243-01 2 237489189 237489189 C T ACKR3 Silent p.I27I 0.23 TCGA-HU-8243-01 2 39040977 39040977 G C DHX57 Missense_Mutation p.P1223A 0.25 deleterious(0.01) probably_damaging(0.984) TCGA-HU-8243-01 2 43768308 43768308 G A THADA Missense_Mutation p.T1085M 0.05 deleterious(0) probably_damaging(0.958) TCGA-HU-8243-01 2 80835419 80835419 G T CTNNA2 Silent p.L802L 0.47 TCGA-HU-8243-01 3 126707595 126707595 C G PLXNA1 Missense_Mutation p.H53Q 0.18 deleterious(0) probably_damaging(0.927) TCGA-HU-8243-01 3 160964220 160964220 G A NMD3 Missense_Mutation p.G372R 0.16 deleterious(0.03) probably_damaging(0.997) TCGA-HU-8243-01 3 184101158 184101158 C T CHRD Silent p.A424A 0.16 TCGA-HU-8243-01 3 52282218 52282219 - CC PPM1M Frame_Shift_Ins p.E44Qfs*32 0.22 TCGA-HU-8243-01 3 6903381 6903381 C T GRM7 Silent p.G102G 0.33 TCGA-HU-8243-01 3 71803433 71803433 C T GPR27 Missense_Mutation p.A78V 0.69 tolerated(0.06) benign(0.011) TCGA-HU-8243-01 3 77607240 77607240 G A ROBO2 Silent p.P475P 0.24 TCGA-HU-8243-01 4 134073626 134073626 G A PCDH10 Silent p.A777A 0.23 TCGA-HU-8243-01 4 155156232 155156232 T A DCHS2 Missense_Mutation p.E2736V 0.27 tolerated(0.15) benign(0.08) TCGA-HU-8243-01 4 44450414 44450414 G C KCTD8 Missense_Mutation p.P43A 0.19 deleterious(0.02) probably_damaging(0.986) TCGA-HU-8243-01 4 55131247 55131247 G C PDGFRA Intron 0.24 TCGA-HU-8243-01 4 74005554 74005554 C T ANKRD17 Missense_Mutation p.A927T 0.28 benign(0.001) TCGA-HU-8243-01 5 112179441 112179441 G C APC Missense_Mutation p.G2717A 0.29 probably_damaging(1) TCGA-HU-8243-01 5 131398550 131398550 A G IL3 3'UTR 0.29 TCGA-HU-8243-01 5 140188818 140188818 G A PCDHA4 Silent p.A682A 0.33 TCGA-HU-8243-01 5 140731844 140731844 G A PCDHGB1 Missense_Mutation p.D673N 0.20 tolerated(0.16) benign(0.382) TCGA-HU-8243-01 5 147261134 147261134 G C SCGB3A2 Missense_Mutation p.E61Q 0.26 deleterious(0.01) probably_damaging(0.997) TCGA-HU-8243-01 5 154395374 154395374 G A KIF4B Missense_Mutation p.R652H 0.27 tolerated(0.06) benign(0.035) TCGA-HU-8243-01 5 158250212 158250212 C T EBF1 Silent p.S250S 0.31 TCGA-HU-8243-01 5 15928122 15928122 C T FBXL7 Missense_Mutation p.T84M 0.17 tolerated(0.1) probably_damaging(0.991) TCGA-HU-8243-01 5 15936833 15936833 C T FBXL7 Silent p.S338S 0.24 TCGA-HU-8243-01 5 173534384 173534384 G A NSG2 Missense_Mutation p.R131H 0.36 tolerated(0.09) probably_damaging(0.973) TCGA-HU-8243-01 5 35039557 35039557 C T AGXT2 Silent p.V78V 0.06 TCGA-HU-8243-01 5 68902954 68902954 G T RP11-848G14.2 RNA 0.12 TCGA-HU-8243-01 5 78329126 78329126 G T DMGDH Silent p.G433G 0.28 TCGA-HU-8243-01 6 13977677 13977677 G T RNF182 Silent p.L109L 0.53 TCGA-HU-8243-01 6 142409655 142409655 C T NMBR Silent p.P47P 0.19 TCGA-HU-8243-01 6 26216797 26216799 CTT - HIST1H2BG In_Frame_Del p.K25del 0.24 TCGA-HU-8243-01 6 35705833 35705833 C T ARMC12 Missense_Mutation p.R92W 0.63 tolerated(0.18) benign(0.031) TCGA-HU-8243-01 6 42819869 42819869 G C GLTSCR1L Missense_Mutation p.A627P 0.10 tolerated(0.06) possibly_damaging(0.636) TCGA-HU-8243-01 6 52288904 52288904 G A EFHC1 Missense_Mutation p.G75D 0.11 deleterious(0.04) benign(0.259) TCGA-HU-8243-01 6 55638913 55638913 G A BMP5 Nonsense_Mutation p.R321* 0.25 TCGA-HU-8243-01 6 87971420 87971420 C T ZNF292 Silent p.T2691T 0.30 TCGA-HU-8243-01 7 113558904 113558904 C T PPP1R3A Missense_Mutation p.E50K 0.12 deleterious(0) probably_damaging(0.99) TCGA-HU-8243-01 7 11581178 11581178 C T THSD7A Missense_Mutation p.E564K 0.19 deleterious(0) probably_damaging(0.992) TCGA-HU-8243-01 7 20371449 20371450 - T ITGB8 Frame_Shift_Ins p.T10Yfs*34 0.37 TCGA-HU-8243-01 7 4007048 4007048 G A SDK1 Missense_Mutation p.A510T 0.33 tolerated(0.11) benign(0.037) TCGA-HU-8243-01 7 42004061 42004061 C T GLI3 Missense_Mutation p.R1537H 0.32 deleterious(0.03) probably_damaging(0.998) TCGA-HU-8243-01 7 70597921 70597921 C T WBSCR17 Missense_Mutation p.R45C 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.63) TCGA-HU-8243-01 8 105521183 105521183 C T LRP12 Missense_Mutation p.E86K 0.33 deleterious(0.01) benign(0.052) TCGA-HU-8243-01 8 125551314 125551314 G A TATDN1 5'UTR 0.07 TCGA-HU-8243-01 8 12957582 12957582 G A DLC1 Missense_Mutation p.T755M 0.53 deleterious(0) probably_damaging(0.999) TCGA-HU-8243-01 8 15517142 15517142 A G TUSC3 Missense_Mutation p.R185G 0.46 deleterious(0.01) probably_damaging(0.979) TCGA-HU-8243-01 8 61655066 61655066 C G CHD7 Missense_Mutation p.Q359E 0.27 benign(0) TCGA-HU-8243-01 9 116093383 116093383 T C WDR31 Missense_Mutation p.I44V 0.13 tolerated(0.52) benign(0.002) TCGA-HU-8243-01 9 133952593 133952593 G T LAMC3 Missense_Mutation p.A1217S 0.62 tolerated(0.08) benign(0.089) TCGA-HU-8243-01 9 139397647 139397647 G A NOTCH1 Silent p.I1718I 0.29 TCGA-HU-8243-01 9 22451997 22451997 C G DMRTA1 3'UTR 0.19 TCGA-HU-8243-01 9 6015555 6015555 T G RANBP6 Missense_Mutation p.E18A 0.59 tolerated(0.08) benign(0.01) TCGA-HU-8243-01 X 125299671 125299671 G C DCAF12L2 Silent p.A79A 0.55 TCGA-HU-8243-01 X 51076235 51076235 C G NUDT10 Missense_Mutation p.L140V 0.20 tolerated(0.14) possibly_damaging(0.728) TCGA-HU-8243-01 X 75650189 75650189 G A MAGEE1 Silent p.G622G 0.26 TCGA-HU-8244-01 10 125521395 125521395 G A CPXM2 Silent p.V590V 0.42 TCGA-HU-8244-01 10 134040324 134040324 G A STK32C Silent p.L207L 0.25 TCGA-HU-8244-01 10 135027203 135027203 G A KNDC1 Missense_Mutation p.V1500I 0.33 deleterious(0.02) possibly_damaging(0.844) TCGA-HU-8244-01 10 54074788 54074788 C T DKK1 Missense_Mutation p.R117C 0.47 deleterious(0.03) probably_damaging(0.961) TCGA-HU-8244-01 10 71168822 71168822 G T TACR2 Silent p.L199L 0.21 TCGA-HU-8244-01 10 78651335 78651335 C T KCNMA1 Missense_Mutation p.R1080H 0.42 deleterious(0) probably_damaging(1) TCGA-HU-8244-01 10 8106093 8106093 C T GATA3 Nonsense_Mutation p.R306* 0.49 TCGA-HU-8244-01 10 93747 93747 G A TUBB8 Silent p.N195N 0.38 TCGA-HU-8244-01 11 1155766 1155766 G A MUC5AC Missense_Mutation p.V152I 0.39 tolerated(0.34) benign(0.036) TCGA-HU-8244-01 11 1159281 1159281 G A MUC5AC Missense_Mutation p.G420R 0.41 tolerated(0.13) benign(0.03) TCGA-HU-8244-01 11 118502108 118502108 C T PHLDB1 Missense_Mutation p.A671V 0.07 tolerated(0.09) benign(0.158) TCGA-HU-8244-01 11 118942330 118942330 T C VPS11 Missense_Mutation p.Y220H 0.43 tolerated(0.53) benign(0.002) TCGA-HU-8244-01 11 55111155 55111155 T C OR4A16 Missense_Mutation p.F160S 0.48 tolerated_low_confidence(0.14) benign(0.034) TCGA-HU-8244-01 11 60183076 60183076 T C MS4A14 Missense_Mutation p.L245P 0.08 deleterious(0) benign(0.438) TCGA-HU-8244-01 11 62520911 62520911 A C ZBTB3 Missense_Mutation p.F126V 0.44 deleterious(0) probably_damaging(1) TCGA-HU-8244-01 11 64119679 64119679 G A CCDC88B Silent p.A1059A 0.33 TCGA-HU-8244-01 11 64664314 64664314 G A ATG2A Silent p.G1726G 0.32 TCGA-HU-8244-01 11 65292977 65292977 T A SCYL1 Intron 0.36 TCGA-HU-8244-01 11 66131742 66131742 C T SLC29A2 Missense_Mutation p.V405I 0.50 tolerated(0.29) benign(0.006) TCGA-HU-8244-01 11 85447544 85447544 C A SYTL2 Missense_Mutation p.D195Y 0.39 deleterious(0.04) possibly_damaging(0.498) TCGA-HU-8244-01 11 92600253 92600253 G A FAT3 Missense_Mutation p.R4002H 0.56 probably_damaging(0.995) TCGA-HU-8244-01 12 100042168 100042168 C G FAM71C Silent p.G72G 0.37 TCGA-HU-8244-01 12 109940856 109940856 G A UBE3B Silent p.S437S 0.37 TCGA-HU-8244-01 12 111758426 111758426 C T CUX2 Silent p.Y871Y 0.27 TCGA-HU-8244-01 12 113448265 113448265 T A OAS2 Missense_Mutation p.N712K 0.50 deleterious_low_confidence(0.04) benign(0.017) TCGA-HU-8244-01 12 117768758 117768758 C A NOS1 Silent p.P39P 0.37 TCGA-HU-8244-01 12 15669828 15669828 A C PTPRO Missense_Mutation p.M573L 0.44 tolerated(0.67) benign(0.003) TCGA-HU-8244-01 12 46322511 46322511 G A SCAF11 Missense_Mutation p.R325C 0.47 deleterious(0) probably_damaging(1) TCGA-HU-8244-01 13 110814658 110814658 G A COL4A1 Missense_Mutation p.P1461S 0.49 unknown(0) TCGA-HU-8244-01 13 111372027 111372027 A C ING1 Silent p.R339R 0.47 TCGA-HU-8244-01 13 23777841 23777841 G A SGCG Missense_Mutation p.R3H 0.50 deleterious(0.01) possibly_damaging(0.673) TCGA-HU-8244-01 13 26927934 26927934 C T CDK8 Missense_Mutation p.R125W 0.61 deleterious(0) possibly_damaging(0.849) TCGA-HU-8244-01 13 38172871 38172871 C G POSTN 5'UTR 0.41 TCGA-HU-8244-01 13 43180928 43180928 C T TNFSF11 Silent p.N276N 0.44 TCGA-HU-8244-01 13 58207244 58207244 C T PCDH17 Silent p.D188D 0.38 TCGA-HU-8244-01 13 58208514 58208514 G A PCDH17 Missense_Mutation p.A612T 0.38 deleterious(0) probably_damaging(1) TCGA-HU-8244-01 13 88328838 88328838 G A SLITRK5 Missense_Mutation p.E399K 0.44 tolerated(0.21) benign(0.011) TCGA-HU-8244-01 14 20852291 20852291 C T TEP1 Missense_Mutation p.R1147H 0.53 tolerated(0.08) benign(0.017) TCGA-HU-8244-01 14 64066573 64066573 C T WDR89 Missense_Mutation p.D30N 0.47 tolerated(0.07) benign(0.048) TCGA-HU-8244-01 14 64568746 64568746 G A SYNE2 Missense_Mutation p.G4160R 0.31 probably_damaging(0.923) TCGA-HU-8244-01 14 73989601 73989634 TGCTGGGCAGGCCTCGCTGCCACACCACCTCCTG - HEATR4 Frame_Shift_Del p.Q75Ffs*43 0.16 TCGA-HU-8244-01 14 75544367 75544367 G A ZC2HC1C 3'UTR 0.55 TCGA-HU-8244-01 14 95906301 95906301 G A SYNE3 Missense_Mutation p.R675W 0.50 tolerated(0.08) benign(0.021) TCGA-HU-8244-01 15 25302080 25302080 G A SNORD116-3 RNA 0.42 TCGA-HU-8244-01 15 25336782 25336782 T G SNORD116-23 5'Flank 0.15 TCGA-HU-8244-01 15 43712539 43712539 C T TP53BP1 Missense_Mutation p.V1549M 0.42 deleterious(0) probably_damaging(1) TCGA-HU-8244-01 15 52511986 52511986 C T MYO5C Missense_Mutation p.R1252H 0.50 tolerated(0.6) benign(0) TCGA-HU-8244-01 15 68612578 68612578 G A ITGA11 Missense_Mutation p.T854M 0.42 deleterious(0) probably_damaging(0.922) TCGA-HU-8244-01 15 89719110 89719110 C T ABHD2 Silent p.V202V 0.38 TCGA-HU-8244-01 15 89753963 89753963 G A RLBP1 Silent p.V254V 0.40 TCGA-HU-8244-01 15 99250962 99250962 G A IGF1R Missense_Mutation p.R89Q 0.39 deleterious(0) probably_damaging(1) TCGA-HU-8244-01 16 21109952 21109952 C T DNAH3 Silent p.A835A 0.41 TCGA-HU-8244-01 16 28848194 28848194 T G ATXN2L 3'UTR 0.53 TCGA-HU-8244-01 16 28906274 28906274 G A ATP2A1 Silent p.S473S 0.07 TCGA-HU-8244-01 16 53636047 53636047 C T RPGRIP1L Missense_Mutation p.E1297K 0.38 deleterious(0.02) benign(0.081) TCGA-HU-8244-01 16 65025710 65025710 G T CDH11 Missense_Mutation p.L258M 0.43 deleterious(0) probably_damaging(0.988) TCGA-HU-8244-01 16 66969399 66969399 A T CES2 Missense_Mutation p.Q18L 0.50 deleterious_low_confidence(0.01) benign(0.008) TCGA-HU-8244-01 16 67692662 67692662 G A ACD Silent p.L321L 0.53 TCGA-HU-8244-01 16 84027967 84027967 C T NECAB2 Silent p.P219P 0.38 TCGA-HU-8244-01 17 36521269 36521269 C T SOCS7 Missense_Mutation p.P346L 0.35 tolerated(0.45) benign(0.011) TCGA-HU-8244-01 17 4846728 4846728 G A RNF167 Missense_Mutation p.R195H 0.41 deleterious(0.03) benign(0.005) TCGA-HU-8244-01 17 7578265 7578265 A G TP53 Missense_Mutation p.I195T 0.41 deleterious(0) probably_damaging(1) TCGA-HU-8244-01 18 44013271 44013271 G A RNF165 Silent p.S60S 0.45 TCGA-HU-8244-01 18 76754622 76754622 C T SALL3 Silent p.N877N 0.50 TCGA-HU-8244-01 19 14910098 14910098 A G OR7C1 Missense_Mutation p.M284T 0.35 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-HU-8244-01 19 19373601 19373601 C G HAPLN4 5'UTR 0.50 TCGA-HU-8244-01 19 22379574 22379574 C A ZNF676 5'UTR 0.48 TCGA-HU-8244-01 19 30934805 30934805 C A ZNF536 Silent p.G112G 0.23 TCGA-HU-8244-01 19 35850557 35850557 G A FFAR3 Silent p.P255P 0.13 TCGA-HU-8244-01 19 39798422 39798422 C T LRFN1 Missense_Mutation p.A723T 0.74 tolerated(0.24) possibly_damaging(0.897) TCGA-HU-8244-01 19 45656023 45656023 G A NKPD1 Missense_Mutation p.R558C 0.20 deleterious(0) benign(0.01) TCGA-HU-8244-01 1 110030320 110030320 C T ATXN7L2 Silent p.I198I 0.37 TCGA-HU-8244-01 1 1139225 1139225 C T TNFRSF18 Missense_Mutation p.E172K 0.47 deleterious_low_confidence(0) possibly_damaging(0.801) TCGA-HU-8244-01 1 151137589 151137589 G A LYSMD1 Missense_Mutation p.T49I 0.24 deleterious(0) probably_damaging(0.991) TCGA-HU-8244-01 1 152777811 152777811 G A LCE1C Silent p.S48S 0.29 TCGA-HU-8244-01 1 16091544 16091544 C T FBLIM1 Silent p.R22R 0.48 TCGA-HU-8244-01 1 17280821 17280821 G A CROCC Missense_Mutation p.R1097Q 0.38 probably_damaging(0.997) TCGA-HU-8244-01 1 200946359 200946359 G A KIF21B Missense_Mutation p.R1436C 0.70 deleterious(0) probably_damaging(0.999) TCGA-HU-8244-01 1 201286757 201286757 A T PKP1 Missense_Mutation p.N302Y 0.13 deleterious(0.02) probably_damaging(1) TCGA-HU-8244-01 1 209776629 209776629 C A CAMK1G Missense_Mutation p.Q98K 0.55 deleterious(0.01) probably_damaging(0.995) TCGA-HU-8244-01 1 209907742 209907742 G A HSD11B1 Missense_Mutation p.R252H 0.21 deleterious(0) probably_damaging(0.997) TCGA-HU-8244-01 1 22216489 22216489 G A HSPG2 Nonsense_Mutation p.R187* 0.31 TCGA-HU-8244-01 1 36638140 36638140 G A MAP7D1 Missense_Mutation p.R179Q 0.78 probably_damaging(0.998) TCGA-HU-8244-01 20 1961118 1961118 G A PDYN Missense_Mutation p.R206C 0.32 deleterious(0) probably_damaging(1) TCGA-HU-8244-01 20 33722667 33722667 C T EDEM2 Silent p.T192T 0.24 TCGA-HU-8244-01 20 56140937 56140937 G A PCK1 3'UTR 0.27 TCGA-HU-8244-01 20 62521317 62521317 C T TPD52L2 3'UTR 0.31 TCGA-HU-8244-01 21 28210011 28210011 T - ADAMTS1 Frame_Shift_Del p.R931Efs*3 0.32 TCGA-HU-8244-01 21 37595570 37595570 C T DOPEY2 Missense_Mutation p.T431M 0.38 deleterious(0) probably_damaging(0.996) TCGA-HU-8244-01 22 29091862 29091862 C T CHEK2 Splice_Site p.X409_splice 0.28 TCGA-HU-8244-01 22 37455364 37455364 C T KCTD17 Silent p.I173I 0.45 TCGA-HU-8244-01 22 39910085 39910085 C T MIEF1 Silent p.S383S 0.22 TCGA-HU-8244-01 22 40675998 40675998 G A TNRC6B Splice_Site p.X1088_splice 0.50 TCGA-HU-8244-01 22 40831518 40831518 G A MKL1 Silent p.S16S 0.10 TCGA-HU-8244-01 22 50657765 50657765 G A TUBGCP6 Missense_Mutation p.T1479M 0.40 deleterious(0) probably_damaging(0.97) TCGA-HU-8244-01 2 105915160 105915161 - G TGFBRAP1 Frame_Shift_Ins p.M231Hfs*35 0.24 TCGA-HU-8244-01 2 108626853 108626853 G T SLC5A7 Missense_Mutation p.V427F 0.51 tolerated(0.75) benign(0.001) TCGA-HU-8244-01 2 116520170 116520170 C T DPP10 Missense_Mutation p.T370M 0.33 tolerated(0.13) benign(0.066) TCGA-HU-8244-01 2 152522726 152522726 C A NEB Missense_Mutation p.A1637S 0.33 probably_damaging(0.997) TCGA-HU-8244-01 2 170096135 170096135 G C LRP2 Missense_Mutation p.S1399C 0.56 possibly_damaging(0.796) TCGA-HU-8244-01 2 175612905 175612905 C T CHRNA1 Missense_Mutation p.G466R 0.53 deleterious(0) probably_damaging(1) TCGA-HU-8244-01 2 21224623 21224623 T C APOB Silent p.G4557G 0.51 TCGA-HU-8244-01 2 223161736 223161736 G T PAX3 Silent p.G94G 0.47 TCGA-HU-8244-01 2 238267860 238267860 C T COL6A3 Missense_Mutation p.D2115N 0.37 benign(0.077) TCGA-HU-8244-01 2 26203628 26203628 T C KIF3C Missense_Mutation p.I387V 0.42 benign(0.289) TCGA-HU-8244-01 2 32449563 32449563 A C NLRC4 Silent p.A1018A 0.43 TCGA-HU-8244-01 2 61019283 61019283 A G PAPOLG Missense_Mutation p.N513S 0.44 tolerated(0.94) benign(0) TCGA-HU-8244-01 2 80646695 80646695 T G CTNNA2 Missense_Mutation p.V420G 0.46 deleterious(0) probably_damaging(0.926) TCGA-HU-8244-01 3 126260824 126260824 G A CHST13 Silent p.A143A 0.47 TCGA-HU-8244-01 3 128182137 128182137 G A DNAJB8 5'UTR 0.48 TCGA-HU-8244-01 3 147127956 147127956 G A ZIC1 Silent p.A19A 0.56 TCGA-HU-8244-01 3 147130363 147130363 C T ZIC1 Silent p.S347S 0.44 TCGA-HU-8244-01 3 47461040 47461040 G A SCAP Missense_Mutation p.P573L 0.42 tolerated(0.15) benign(0.063) TCGA-HU-8244-01 3 53925825 53925828 CTTC - SELK 5'UTR 0.36 TCGA-HU-8244-01 3 9515161 9515161 C G SETD5 Nonsense_Mutation p.S1146* 0.47 TCGA-HU-8244-01 3 97851713 97851713 C A OR5H1 Missense_Mutation p.P58T 0.36 deleterious(0) possibly_damaging(0.901) TCGA-HU-8244-01 4 119461377 119461377 G C CEP170P1 RNA 0.31 TCGA-HU-8244-01 4 174292641 174292641 A G SAP30 Missense_Mutation p.D103G 0.30 deleterious(0) probably_damaging(0.989) TCGA-HU-8244-01 4 189060921 189060921 G A TRIML1 Missense_Mutation p.R70H 0.46 deleterious(0.03) benign(0.022) TCGA-HU-8244-01 4 2233626 2233626 G A HAUS3 3'UTR 0.39 TCGA-HU-8244-01 4 38051454 38051454 G A TBC1D1 Silent p.P615P 0.38 TCGA-HU-8244-01 4 57843170 57843170 C A NOA1 Silent p.L194L 0.47 TCGA-HU-8244-01 5 138283124 138283124 C T SIL1 Missense_Mutation p.M356I 0.37 tolerated(0.4) benign(0.014) TCGA-HU-8244-01 5 140573733 140573733 C T PCDHB10 Silent p.R536R 0.32 TCGA-HU-8244-01 5 140812691 140812691 G A PCDHGA12 Missense_Mutation p.E789K 0.45 deleterious_low_confidence(0.02) benign(0.187) TCGA-HU-8244-01 5 158204450 158204450 T C EBF1 Missense_Mutation p.K336R 0.42 tolerated(0.15) benign(0.036) TCGA-HU-8244-01 5 158524122 158524122 G A EBF1 Missense_Mutation p.R51W 0.57 deleterious(0) probably_damaging(0.979) TCGA-HU-8244-01 5 63257336 63257336 C A HTR1A Missense_Mutation p.A71S 0.48 tolerated(0.07) probably_damaging(1) TCGA-HU-8244-01 5 653170 653170 G T CEP72 Nonsense_Mutation p.E616* 0.21 TCGA-HU-8244-01 5 89949385 89949385 G A GPR98 Missense_Mutation p.G1332R 0.44 probably_damaging(0.995) TCGA-HU-8244-01 6 123892166 123892166 C G TRDN Missense_Mutation p.S45T 0.43 deleterious_low_confidence(0) unknown(0) TCGA-HU-8244-01 6 128291305 128291305 A T PTPRK 3'UTR 0.39 TCGA-HU-8244-01 6 139487981 139487981 T C HECA Missense_Mutation p.S278P 0.48 tolerated(0.14) benign(0.006) TCGA-HU-8244-01 6 152782791 152782791 G C SYNE1 Missense_Mutation p.Q779E 0.35 benign(0.071) TCGA-HU-8244-01 6 165715750 165715750 C T C6orf118 Missense_Mutation p.V21M 0.38 tolerated(0.08) unknown(0) TCGA-HU-8244-01 6 27861236 27861236 C T HIST1H2BO 5'UTR 0.29 TCGA-HU-8244-01 6 31540751 31540751 G A LTA Missense_Mutation p.R49H 0.43 tolerated(0.61) benign(0) TCGA-HU-8244-01 6 31868438 31868438 C T ZBTB12 Silent p.S215S 0.37 TCGA-HU-8244-01 6 5369064 5369064 G T FARS2 Missense_Mutation p.W87C 0.38 tolerated(0.21) benign(0.053) TCGA-HU-8244-01 6 72984062 72984062 T C RIMS1 Missense_Mutation p.S1137P 0.61 tolerated(0.09) probably_damaging(0.98) TCGA-HU-8244-01 6 83767716 83767716 T A UBE3D Missense_Mutation p.M35L 0.36 tolerated(0.29) benign(0.006) TCGA-HU-8244-01 6 90425471 90425471 C T MDN1 Missense_Mutation p.R2254H 0.45 probably_damaging(1) TCGA-HU-8244-01 7 27183092 27183092 G A HOXA5 Silent p.Y45Y 0.24 TCGA-HU-8244-01 7 30963155 30963155 C T AQP1 Missense_Mutation p.R241C 0.28 deleterious(0.01) probably_damaging(0.992) TCGA-HU-8244-01 8 144620659 144620659 C T ZC3H3 Missense_Mutation p.R293Q 0.33 deleterious(0.03) benign(0.054) TCGA-HU-8244-01 8 21853032 21853032 G A XPO7 Missense_Mutation p.R756Q 0.22 deleterious(0.02) benign(0.181) TCGA-HU-8244-01 8 23114092 23114092 C T CHMP7 Silent p.S259S 0.28 TCGA-HU-8244-01 8 29923523 29923523 C T TMEM66 Silent p.T325T 0.30 TCGA-HU-8244-01 8 48734315 48734315 T C PRKDC Silent p.T2986T 0.28 TCGA-HU-8244-01 8 61693941 61693941 A G CHD7 Missense_Mutation p.K683R 0.30 benign(0.292) TCGA-HU-8244-01 8 73849458 73849458 C T KCNB2 Missense_Mutation p.P623L 0.20 tolerated_low_confidence(0.11) benign(0.053) TCGA-HU-8244-01 9 130422369 130422369 C T STXBP1 Missense_Mutation p.H103Y 0.35 tolerated(0.3) probably_damaging(0.995) TCGA-HU-8244-01 9 131600026 131600026 C T CCBL1 Missense_Mutation p.G169S 0.25 tolerated(1) benign(0) TCGA-HU-8244-01 9 131864271 131864271 C A CRAT Missense_Mutation p.Q232H 0.39 deleterious(0) probably_damaging(1) TCGA-HU-8244-01 9 141014620 141014620 G A CACNA1B Missense_Mutation p.V2012I 0.62 tolerated(1) benign(0.002) TCGA-HU-8244-01 9 2717764 2717764 C T KCNV2 Missense_Mutation p.R9W 0.39 tolerated_low_confidence(0.07) benign(0.002) TCGA-HU-8244-01 9 33385751 33385751 G A AQP7 Silent p.I213I 0.33 TCGA-HU-8244-01 9 97084562 97084562 C T NUTM2F Missense_Mutation p.E255K 0.27 deleterious(0) probably_damaging(0.999) TCGA-HU-8244-01 9 99697659 99697659 G A NUTM2G Missense_Mutation p.E255K 0.12 deleterious(0) probably_damaging(0.998) TCGA-HU-8244-01 X 103267817 103267817 C T H2BFWT Missense_Mutation p.R139Q 0.47 tolerated(1) benign(0.009) TCGA-HU-8244-01 X 10535201 10535201 G A MID1 Silent p.D129D 0.42 TCGA-HU-8244-01 X 125686485 125686485 G A DCAF12L1 Missense_Mutation p.P36L 0.46 tolerated(0.46) benign(0.004) TCGA-HU-8244-01 X 141291802 141291802 C T MAGEC2 5'UTR 0.46 TCGA-HU-8244-01 X 150348958 150348958 C T GPR50 Silent p.F301F 0.42 TCGA-HU-8244-01 X 2408702 2408702 C T ZBED1 Missense_Mutation p.R20H 0.39 deleterious(0.04) probably_damaging(0.999) TCGA-HU-8244-01 X 34148894 34148894 G A FAM47A Missense_Mutation p.T501M 0.49 tolerated(0.24) benign(0.386) TCGA-HU-8244-01 X 48921440 48921440 C T CCDC120 Missense_Mutation p.R78W 0.48 deleterious(0) possibly_damaging(0.766) TCGA-HU-8244-01 X 49066462 49066462 G T CACNA1F Silent p.I1554I 0.39 TCGA-HU-8244-01 X 5821576 5821576 G A NLGN4X Silent p.D381D 0.38 TCGA-HU-8245-01 10 13698676 13698676 G A FRMD4A Silent p.S971S 0.67 TCGA-HU-8245-01 11 102643648 102643648 T C MMP10 Missense_Mutation p.K386E 0.26 deleterious(0.01) benign(0.329) TCGA-HU-8245-01 11 102650395 102650395 T - MMP10 Frame_Shift_Del p.I63Sfs*12 0.22 TCGA-HU-8245-01 11 105880559 105880559 A C MSANTD4 Missense_Mutation p.H247Q 0.31 tolerated(0.27) benign(0.039) TCGA-HU-8245-01 11 33604931 33604931 C A KIAA1549L Missense_Mutation p.L1187M 0.50 deleterious(0) probably_damaging(1) TCGA-HU-8245-01 11 57958374 57958374 G A OR9Q2 Missense_Mutation p.E138K 0.20 tolerated(0.56) benign(0.005) TCGA-HU-8245-01 11 61133663 61133663 G A TMEM138 Missense_Mutation p.S92N 0.22 deleterious(0.01) probably_damaging(0.913) TCGA-HU-8245-01 11 61665712 61665712 C T RAB3IL1 3'UTR 0.37 TCGA-HU-8245-01 11 65375465 65375465 C T MAP3K11 Missense_Mutation p.G333S 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-HU-8245-01 12 100200338 100200338 G A ANKS1B Silent p.Y171Y 0.26 TCGA-HU-8245-01 12 130647618 130647618 A G FZD10 Missense_Mutation p.D44G 0.11 tolerated(1) probably_damaging(0.997) TCGA-HU-8245-01 12 53045826 53045826 C T KRT2 Missense_Mutation p.R34Q 0.36 deleterious(0.03) unknown(0) TCGA-HU-8245-01 13 37006834 37006834 G A CCNA1 Missense_Mutation p.E26K 0.25 tolerated_low_confidence(0.25) benign(0) TCGA-HU-8245-01 13 97639925 97639925 G A OXGR1 Missense_Mutation p.P30L 0.20 tolerated(0.69) benign(0) TCGA-HU-8245-01 16 169129 169129 C A NPRL3 Missense_Mutation p.G105V 0.22 tolerated(0.11) benign(0.092) TCGA-HU-8245-01 16 57552022 57552022 G A CCDC102A Silent p.C402C 0.13 TCGA-HU-8245-01 16 85813362 85813362 A G EMC8 Silent p.N195N 0.13 TCGA-HU-8245-01 17 11984671 11984671 A G MAP2K4 Splice_Site p.X73_splice 0.28 TCGA-HU-8245-01 17 27051543 27051547 CTTGT - TLCD1 Frame_Shift_Del p.D242Vfs*4 0.13 TCGA-HU-8245-01 17 34851936 34851936 G A MYO19 3'UTR 0.25 TCGA-HU-8245-01 17 38953169 38953169 G A KRT28 Missense_Mutation p.T326M 0.23 tolerated(1) benign(0.019) TCGA-HU-8245-01 17 56326514 56326514 C G LPO Missense_Mutation p.T140S 0.49 tolerated(0.05) possibly_damaging(0.676) TCGA-HU-8245-01 17 57290373 57290373 C A SMG8 Missense_Mutation p.T730N 0.34 tolerated(0.62) benign(0.003) TCGA-HU-8245-01 17 7577560 7577560 A - TP53 Frame_Shift_Del p.S241Pfs*6 0.28 TCGA-HU-8245-01 18 3729181 3729181 C T DLGAP1 Silent p.S515S 0.39 TCGA-HU-8245-01 19 13409734 13409734 C T CACNA1A Missense_Mutation p.A905T 0.42 benign(0.004) TCGA-HU-8245-01 19 15364507 15364507 C T BRD4 Intron 0.37 TCGA-HU-8245-01 19 38799964 38799964 T A YIF1B Missense_Mutation p.D101V 0.22 deleterious(0.02) benign(0.229) TCGA-HU-8245-01 19 58153269 58153270 AG - ZNF211 Frame_Shift_Del p.R538Sfs*9 0.19 TCGA-HU-8245-01 1 103484413 103484413 A T COL11A1 Silent p.G437G 0.16 TCGA-HU-8245-01 1 159912835 159912835 G A IGSF9 Silent p.I55I 0.23 TCGA-HU-8245-01 1 181767666 181767666 C A CACNA1E Missense_Mutation p.S2213Y 0.27 deleterious(0.03) benign(0.057) TCGA-HU-8245-01 1 185946997 185946997 A G HMCN1 Missense_Mutation p.Q817R 0.09 probably_damaging(0.968) TCGA-HU-8245-01 1 211093223 211093223 G A KCNH1 Silent p.D407D 0.18 TCGA-HU-8245-01 1 38082187 38082187 G A RSPO1 Silent p.D85D 0.29 TCGA-HU-8245-01 1 43396861 43396861 T C SLC2A1 Missense_Mutation p.Y44C 0.41 deleterious(0.01) possibly_damaging(0.907) TCGA-HU-8245-01 1 70504365 70504365 G A LRRC7 Missense_Mutation p.R915H 0.28 tolerated_low_confidence(0.19) benign(0.015) TCGA-HU-8245-01 1 7725097 7725097 C T CAMTA1 Silent p.S830S 0.26 TCGA-HU-8245-01 20 20013784 20013784 T C NAA20 Missense_Mutation p.S164P 0.20 deleterious(0) possibly_damaging(0.897) TCGA-HU-8245-01 20 2774876 2774876 A C CPXM1 Missense_Mutation p.L722R 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-HU-8245-01 20 35317165 35317165 T C NDRG3 Missense_Mutation p.H39R 0.07 deleterious(0.03) benign(0.022) TCGA-HU-8245-01 20 43355838 43355838 C T WISP2 Missense_Mutation p.R215W 0.28 deleterious(0) probably_damaging(1) TCGA-HU-8245-01 20 742263 742263 A G SLC52A3 Intron 0.14 TCGA-HU-8245-01 21 15893509 15893509 G A SAMSN1 Missense_Mutation p.R99W 0.29 deleterious(0) benign(0.249) TCGA-HU-8245-01 22 24167535 24167535 T G SMARCB1 Missense_Mutation p.F307V 0.31 deleterious(0) probably_damaging(0.997) TCGA-HU-8245-01 22 40037114 40037114 C T CACNA1I Missense_Mutation p.T328M 0.18 deleterious(0) probably_damaging(0.935) TCGA-HU-8245-01 22 41739432 41739432 C T ZC3H7B Silent p.G437G 0.13 TCGA-HU-8245-01 22 50987858 50987858 C T KLHDC7B Silent p.Y421Y 0.32 TCGA-HU-8245-01 2 102954655 102954655 T C IL1RL1 5'UTR 0.64 TCGA-HU-8245-01 2 11053671 11053671 C T KCNF1 Silent p.Y373Y 0.46 TCGA-HU-8245-01 2 152404896 152404896 C T NEB Missense_Mutation p.A6695T 0.17 probably_damaging(1) TCGA-HU-8245-01 2 179622343 179622343 C A TTN Missense_Mutation p.G3535V 0.54 TCGA-HU-8245-01 2 37586990 37586990 C T QPCT Missense_Mutation p.L179F 0.53 tolerated(0.7) benign(0.009) TCGA-HU-8245-01 2 85581735 85581735 C G RETSAT 5'UTR 0.56 TCGA-HU-8245-01 3 108129642 108129642 C T MYH15 Missense_Mutation p.R1448H 0.22 tolerated(0.05) benign(0.04) TCGA-HU-8245-01 3 48668088 48668088 G T SLC26A6 Nonsense_Mutation p.C400* 0.25 TCGA-HU-8245-01 3 50012778 50012779 CT - RBM6 Frame_Shift_Del p.P479Rfs*14 0.09 TCGA-HU-8245-01 3 97686239 97686239 G A MINA Nonsense_Mutation p.Q67* 0.21 TCGA-HU-8245-01 4 148575375 148575375 T C PRMT10 Missense_Mutation p.D558G 0.55 tolerated(0.14) benign(0.002) TCGA-HU-8245-01 4 177095813 177095813 A C WDR17 Missense_Mutation p.L1170F 0.55 deleterious(0.02) probably_damaging(0.998) TCGA-HU-8245-01 4 185339369 185339369 T A IRF2 Splice_Site p.X122_splice 0.37 TCGA-HU-8245-01 4 66467874 66467874 A C EPHA5 Missense_Mutation p.F132C 0.20 deleterious(0) probably_damaging(0.997) TCGA-HU-8245-01 4 83348624 83348625 - T HNRNPDL Frame_Shift_Ins p.L290Ifs*15 0.43 TCGA-HU-8245-01 4 96127865 96127865 C T UNC5C Missense_Mutation p.V606I 0.47 tolerated(1) benign(0.002) TCGA-HU-8245-01 5 112174471 112174471 A - APC Frame_Shift_Del p.K1061Nfs*65 0.30 TCGA-HU-8245-01 5 141243873 141243873 G C PCDH1 Missense_Mutation p.R675G 0.40 deleterious(0) probably_damaging(0.999) TCGA-HU-8245-01 5 149276316 149276316 C T PDE6A Silent p.K477K 0.32 TCGA-HU-8245-01 5 21854857 21854857 G A CDH12 Missense_Mutation p.P190L 0.35 deleterious(0) probably_damaging(0.98) TCGA-HU-8245-01 6 170862307 170862307 A T PSMB1 Nonsense_Mutation p.Y8* 0.15 TCGA-HU-8245-01 6 30856549 30856549 G T DDR1 Missense_Mutation p.V15L 0.16 tolerated(0.9) benign(0.028) TCGA-HU-8245-01 6 32020697 32020697 C A TNXB Silent p.L2953L 0.17 TCGA-HU-8245-01 6 3226033 3226033 G A TUBB2B Missense_Mutation p.A97V 0.27 deleterious_low_confidence(0) probably_damaging(1) TCGA-HU-8245-01 6 33638163 33638163 A C ITPR3 Missense_Mutation p.I751L 0.22 tolerated(0.53) benign(0.13) TCGA-HU-8245-01 6 43333179 43333179 C G ZNF318 Splice_Site p.X134_splice 0.13 TCGA-HU-8245-01 6 49986840 49986840 T C DEFB110 Splice_Site p.X19_splice 0.12 TCGA-HU-8245-01 7 150439921 150439921 A C GIMAP5 Silent p.R232R 0.19 TCGA-HU-8245-01 8 110100010 110100010 C T TRHR Missense_Mutation p.S90F 0.25 tolerated(0.17) benign(0.052) TCGA-HU-8245-01 8 54142312 54142312 C T OPRK1 Missense_Mutation p.V230I 0.33 tolerated(0.1) probably_damaging(0.999) TCGA-HU-8245-01 8 56922756 56922756 A G LYN 3'UTR 0.64 TCGA-HU-8245-01 9 101470875 101470875 G A GABBR2 Missense_Mutation p.P49S 0.31 tolerated(0.85) unknown(0) TCGA-HU-8245-01 9 104433226 104433226 C A GRIN3A Missense_Mutation p.V490F 0.32 deleterious(0.05) benign(0.221) TCGA-HU-8245-01 9 117186780 117186780 C A DFNB31 Missense_Mutation p.S417I 0.30 deleterious(0.01) possibly_damaging(0.558) TCGA-HU-8245-01 9 37762114 37762114 G A TRMT10B Silent p.S62S 0.16 TCGA-HU-8245-01 X 108718759 108718759 G C GUCY2F Missense_Mutation p.S136W 0.29 deleterious(0.04) benign(0.008) TCGA-HU-8249-01 10 102988411 102988411 G A LBX1 Silent p.C54C 0.43 TCGA-HU-8249-01 10 90522041 90522041 C T LIPN Nonsense_Mutation p.R69* 0.36 TCGA-HU-8249-01 11 101833060 101833060 G A KIAA1377 Missense_Mutation p.A432T 0.22 tolerated(0.26) benign(0.031) TCGA-HU-8249-01 11 108216477 108216478 AA - ATM Frame_Shift_Del p.K2811Vfs*3 0.44 TCGA-HU-8249-01 11 113103891 113103891 C T NCAM1 Silent p.I564I 0.38 TCGA-HU-8249-01 11 1157553 1157553 C T MUC5AC Missense_Mutation p.T245M 0.32 tolerated(0.15) benign(0.22) TCGA-HU-8249-01 11 116691672 116691672 G A APOA4 Missense_Mutation p.L368F 0.51 deleterious(0.01) possibly_damaging(0.704) TCGA-HU-8249-01 11 118947716 118947716 A G VPS11 Missense_Mutation p.N449D 0.16 tolerated(0.12) probably_damaging(0.977) TCGA-HU-8249-01 11 120302617 120302617 A T ARHGEF12 Silent p.A307A 0.38 TCGA-HU-8249-01 11 123813572 123813572 G C OR6T1 3'UTR 0.19 TCGA-HU-8249-01 11 18158726 18158726 G A MRGPRX3 Intron 0.32 TCGA-HU-8249-01 11 18428747 18428747 G T LDHA Silent p.V335V 0.35 TCGA-HU-8249-01 11 47711960 47711960 G A AGBL2 Silent p.T433T 0.45 TCGA-HU-8249-01 11 55944637 55944637 C T OR5J2 Missense_Mutation p.P182S 0.47 tolerated(0.08) benign(0.363) TCGA-HU-8249-01 11 56345162 56345162 G T OR5M10 Missense_Mutation p.F12L 0.27 deleterious(0.01) possibly_damaging(0.78) TCGA-HU-8249-01 11 71212436 71212436 C T NADSYN1 3'UTR 0.70 TCGA-HU-8249-01 12 113543594 113543594 C T RASAL1 Silent p.T586T 0.71 TCGA-HU-8249-01 12 11461525 11461525 G T PRB4 Missense_Mutation p.S131Y 0.09 deleterious_low_confidence(0) unknown(0) TCGA-HU-8249-01 12 26580960 26580961 - AT ITPR2 Frame_Shift_Ins p.M2277Ifs*19 0.42 TCGA-HU-8249-01 12 38714307 38714307 G T ALG10B Missense_Mutation p.L238F 0.19 tolerated(0.39) benign(0.012) TCGA-HU-8249-01 12 5020969 5020969 G A KCNA1 Missense_Mutation p.R142H 0.21 deleterious(0.03) possibly_damaging(0.703) TCGA-HU-8249-01 12 57919589 57919589 G A MBD6 Missense_Mutation p.A280T 0.27 deleterious_low_confidence(0.01) unknown(0) TCGA-HU-8249-01 12 64020294 64020294 C G DPY19L2 Silent p.L272L 0.26 TCGA-HU-8249-01 12 69265719 69265719 C T CPM Silent p.L92L 0.29 TCGA-HU-8249-01 13 109793302 109793302 C T MYO16 Missense_Mutation p.A1559V 0.31 tolerated_low_confidence(0.14) benign(0.002) TCGA-HU-8249-01 13 36049332 36049332 C T MAB21L1 Missense_Mutation p.R315Q 0.40 tolerated(0.19) possibly_damaging(0.722) TCGA-HU-8249-01 13 36410222 36410222 C T DCLK1 Missense_Mutation p.G393R 0.32 deleterious(0.02) probably_damaging(0.98) TCGA-HU-8249-01 13 73505334 73505334 G A PIBF1 Missense_Mutation p.E588K 0.09 deleterious(0.02) benign(0.397) TCGA-HU-8249-01 13 98116679 98116679 G T RAP2A Missense_Mutation p.A179S 0.14 tolerated(0.3) benign(0.007) TCGA-HU-8249-01 14 106330055 106330055 C T IGHJ5 Nonsense_Mutation p.W6* 0.65 TCGA-HU-8249-01 14 21936528 21936528 A G RAB2B Missense_Mutation p.I117T 0.35 deleterious(0) probably_damaging(0.987) TCGA-HU-8249-01 14 22592133 22592133 C T TRAV26-1 Missense_Mutation p.T73I 0.21 tolerated(0.12) benign(0.048) TCGA-HU-8249-01 14 26917189 26917189 A G NOVA1 Silent p.A500A 0.44 TCGA-HU-8249-01 14 33205031 33205031 T A AKAP6 Nonsense_Mutation p.C1105* 0.50 TCGA-HU-8249-01 14 52734759 52734759 A G PTGDR Missense_Mutation p.K76R 0.48 deleterious(0.02) probably_damaging(1) TCGA-HU-8249-01 14 70478205 70478205 C T SMOC1 Silent p.Y287Y 0.29 TCGA-HU-8249-01 14 74876111 74876111 C T SYNDIG1L Missense_Mutation p.E113K 0.31 tolerated(0.26) benign(0.223) TCGA-HU-8249-01 14 89300058 89300058 G T TTC8 Missense_Mutation p.V46L 0.31 tolerated_low_confidence(0.57) benign(0.001) TCGA-HU-8249-01 15 33993251 33993251 G A RYR3 Silent p.A2151A 0.25 TCGA-HU-8249-01 15 48807662 48807662 G A FBN1 Missense_Mutation p.R464C 0.37 possibly_damaging(0.586) TCGA-HU-8249-01 15 72189824 72189824 T G MYO9A Missense_Mutation p.K1674Q 0.30 tolerated_low_confidence(0.08) benign(0.236) TCGA-HU-8249-01 15 80855457 80855457 C T ARNT2 Missense_Mutation p.S398L 0.39 deleterious(0) possibly_damaging(0.711) TCGA-HU-8249-01 16 16295962 16295962 G A ABCC6 Missense_Mutation p.L358F 0.36 tolerated(0.14) benign(0.12) TCGA-HU-8249-01 16 23647258 23647258 T C PALB2 Silent p.K203K 0.25 TCGA-HU-8249-01 16 57060526 57060526 C G NLRC5 Silent p.L557L 0.38 TCGA-HU-8249-01 16 72992903 72992903 G A ZFHX3 Missense_Mutation p.A381V 0.18 benign(0.004) TCGA-HU-8249-01 16 855813 855813 G A PRR25 Missense_Mutation p.R124Q 0.25 tolerated_low_confidence(0.28) benign(0) TCGA-HU-8249-01 17 38186032 38186032 C T MED24 Missense_Mutation p.R412Q 0.20 deleterious(0.01) probably_damaging(0.985) TCGA-HU-8249-01 17 61498102 61498102 C T TANC2 Missense_Mutation p.R1587W 0.28 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-HU-8249-01 17 7754452 7754452 C T KDM6B Missense_Mutation p.R1263W 0.24 probably_damaging(0.99) TCGA-HU-8249-01 18 61264704 61264704 T A SERPINB13 3'UTR 0.91 TCGA-HU-8249-01 19 10662814 10662814 G A ATG4D Intron 0.22 TCGA-HU-8249-01 19 11325064 11325064 G A DOCK6 Missense_Mutation p.R1409W 0.36 tolerated(0.1) possibly_damaging(0.586) TCGA-HU-8249-01 19 13059068 13059068 G A RAD23A Silent p.P104P 0.24 TCGA-HU-8249-01 19 14626879 14626879 C T DNAJB1 Missense_Mutation p.G299E 0.42 deleterious(0.01) probably_damaging(0.986) TCGA-HU-8249-01 19 17085975 17085975 G A CPAMD8 Nonsense_Mutation p.R715* 0.33 TCGA-HU-8249-01 19 21927839 21927839 C G ZNF100 Missense_Mutation p.E43Q 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-HU-8249-01 19 21950351 21950351 T C ZNF100 5'UTR 0.33 TCGA-HU-8249-01 19 334463 334463 G A MIER2 Silent p.C60C 0.37 TCGA-HU-8249-01 19 39005693 39005693 G A RYR1 Missense_Mutation p.R3167Q 0.29 benign(0.043) TCGA-HU-8249-01 19 42224897 42224897 G A CEACAM5 Silent p.A609A 0.43 TCGA-HU-8249-01 19 44740730 44740730 A - ZNF227 Frame_Shift_Del p.H716Lfs*104 0.24 TCGA-HU-8249-01 19 4543641 4543641 G A SEMA6B Missense_Mutation p.A880V 0.36 tolerated_low_confidence(0.23) benign(0.005) TCGA-HU-8249-01 19 45974176 45974176 G A FOSB Missense_Mutation p.R139Q 0.42 tolerated(0.07) benign(0.238) TCGA-HU-8249-01 19 47884092 47884092 G A DHX34 Missense_Mutation p.R1001Q 0.37 tolerated(0.12) benign(0.117) TCGA-HU-8249-01 19 6187752 6187752 A C ACSBG2 Missense_Mutation p.Q608P 0.40 deleterious(0) probably_damaging(0.998) TCGA-HU-8249-01 19 6471429 6471429 C T DENND1C Missense_Mutation p.G413R 0.25 deleterious(0.03) benign(0.046) TCGA-HU-8249-01 19 648886 648886 G A RNF126 Silent p.H222H 0.53 TCGA-HU-8249-01 1 120165891 120165891 C T ZNF697 Missense_Mutation p.G359S 0.78 deleterious(0.05) probably_damaging(0.998) TCGA-HU-8249-01 1 159019266 159019266 G A IFI16 Intron 0.28 TCGA-HU-8249-01 1 172634912 172634912 C A FASLG Missense_Mutation p.S201Y 0.54 tolerated(1) benign(0.021) TCGA-HU-8249-01 1 182026380 182026380 C T ZNF648 Missense_Mutation p.G256R 0.41 tolerated(0.11) benign(0.221) TCGA-HU-8249-01 1 190067555 190067555 G A BRINP3 Missense_Mutation p.R632C 0.21 deleterious(0) probably_damaging(0.996) TCGA-HU-8249-01 1 196963269 196963269 A G CFHR5 Missense_Mutation p.S164G 0.15 deleterious(0.02) benign(0.05) TCGA-HU-8249-01 1 197063269 197063269 T A ASPM Missense_Mutation p.K3010I 0.57 tolerated(0.43) possibly_damaging(0.617) TCGA-HU-8249-01 1 200842961 200842961 G A GPR25 Missense_Mutation p.V266I 0.11 tolerated(0.73) benign(0.011) TCGA-HU-8249-01 1 216420148 216420148 T C USH2A Missense_Mutation p.K863R 0.17 benign(0.098) TCGA-HU-8249-01 1 228509724 228509724 G A OBSCN Missense_Mutation p.R6018H 0.24 possibly_damaging(0.743) TCGA-HU-8249-01 1 231487108 231487108 A G SPRTN Missense_Mutation p.N170S 0.52 deleterious(0.04) benign(0.021) TCGA-HU-8249-01 1 241728342 241728342 T A KMO Missense_Mutation p.I224N 0.57 deleterious(0) probably_damaging(0.999) TCGA-HU-8249-01 1 248224871 248224871 G T OR2L3 Silent p.V296V 0.29 TCGA-HU-8249-01 1 38032354 38032354 C T DNALI1 3'UTR 0.81 TCGA-HU-8249-01 1 53692785 53692785 G C MAGOH Missense_Mutation p.L125V 0.46 deleterious(0.02) benign(0.202) TCGA-HU-8249-01 20 31024757 31024757 C T ASXL1 Silent p.P1414P 0.20 TCGA-HU-8249-01 20 45771717 45771717 G A EYA2 Missense_Mutation p.R303H 0.27 deleterious(0.03) possibly_damaging(0.84) TCGA-HU-8249-01 20 50701434 50701434 G A ZFP64 Missense_Mutation p.R534W 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-HU-8249-01 20 62630983 62630983 C G PRPF6 Silent p.L298L 0.16 TCGA-HU-8249-01 21 31045320 31045320 C T GRIK1 Missense_Mutation p.A237T 0.75 tolerated(0.45) possibly_damaging(0.836) TCGA-HU-8249-01 21 32127679 32127679 G A KRTAP21-1 Silent p.Y6Y 0.77 TCGA-HU-8249-01 22 38516783 38516783 C T PLA2G6 Silent p.T575T 0.52 TCGA-HU-8249-01 22 43996139 43996139 C T EFCAB6 Missense_Mutation p.D896N 0.26 deleterious(0.01) probably_damaging(1) TCGA-HU-8249-01 2 125204395 125204395 C A CNTNAP5 Missense_Mutation p.Q267K 0.17 deleterious(0.01) probably_damaging(0.981) TCGA-HU-8249-01 2 139429072 139429072 G A NXPH2 Missense_Mutation p.A72V 0.28 tolerated(0.11) benign(0.021) TCGA-HU-8249-01 2 1488493 1488493 C T TPO Silent p.A488A 0.50 TCGA-HU-8249-01 2 158272339 158272339 G A CYTIP Silent p.S310S 0.42 TCGA-HU-8249-01 2 175216446 175216446 C T CIR1 Silent p.S164S 0.36 TCGA-HU-8249-01 2 179457001 179457001 T G TTN Missense_Mutation p.K19877T 0.67 TCGA-HU-8249-01 2 179479416 179479416 C G TTN Missense_Mutation p.K16275N 0.22 TCGA-HU-8249-01 2 182850873 182850873 C T PPP1R1C Silent p.A12A 0.17 TCGA-HU-8249-01 2 186670994 186670994 A T FSIP2 Missense_Mutation p.N5743I 0.64 possibly_damaging(0.498) TCGA-HU-8249-01 2 186689164 186689164 G T FSIP2 Missense_Mutation p.E6899D 0.18 benign(0.011) TCGA-HU-8249-01 2 222429003 222429003 G A EPHA4 Nonsense_Mutation p.R91* 0.23 TCGA-HU-8249-01 2 223158908 223158908 G A PAX3 Silent p.I188I 0.22 TCGA-HU-8249-01 2 27169877 27169877 C - DPYSL5 3'UTR 0.27 TCGA-HU-8249-01 2 33817166 33817166 C T FAM98A Silent p.K106K 0.19 TCGA-HU-8249-01 2 33824359 33824359 G A FAM98A 5'UTR 0.44 TCGA-HU-8249-01 2 46085 46085 T A FAM110C Missense_Mutation p.I101F 0.13 deleterious(0) benign(0.273) TCGA-HU-8249-01 2 61607324 61607324 C T USP34 Missense_Mutation p.A332T 0.28 deleterious(0.03) probably_damaging(0.971) TCGA-HU-8249-01 3 101062717 101062717 G A SENP7 Missense_Mutation p.T640M 0.67 tolerated(0.2) benign(0.002) TCGA-HU-8249-01 3 111782387 111782387 C T TMPRSS7 Missense_Mutation p.S362F 0.22 tolerated(0.69) benign(0.008) TCGA-HU-8249-01 3 141162147 141162147 G A ZBTB38 Missense_Mutation p.R306H 0.28 tolerated(0.55) benign(0) TCGA-HU-8249-01 3 172224683 172224683 G A TNFSF10 Missense_Mutation p.R149C 0.55 deleterious(0.01) possibly_damaging(0.552) TCGA-HU-8249-01 3 196675164 196675164 G A PIGZ Missense_Mutation p.R202C 0.20 tolerated(0.13) benign(0) TCGA-HU-8249-01 3 28533625 28533625 C T ZCWPW2 Silent p.S206S 0.21 TCGA-HU-8249-01 3 31658494 31658494 G T STT3B Missense_Mutation p.Q350H 0.31 tolerated(0.07) possibly_damaging(0.726) TCGA-HU-8249-01 3 39942407 39942407 G C MYRIP Missense_Mutation p.E34Q 0.40 tolerated(0.09) possibly_damaging(0.562) TCGA-HU-8249-01 3 47451047 47451047 C T PTPN23 Silent p.D646D 0.39 TCGA-HU-8249-01 3 49738938 49738938 G A RNF123 Missense_Mutation p.R431H 0.39 deleterious(0.04) probably_damaging(0.996) TCGA-HU-8249-01 3 49845248 49845248 C A UBA7 Missense_Mutation p.S879I 0.42 deleterious(0.02) benign(0.379) TCGA-HU-8249-01 3 51750017 51750017 C T GRM2 Missense_Mutation p.T743M 0.29 deleterious(0) probably_damaging(1) TCGA-HU-8249-01 3 51864501 51864501 G A IQCF3 Missense_Mutation p.R50H 0.40 deleterious(0) possibly_damaging(0.89) TCGA-HU-8249-01 3 54798283 54798283 G T CACNA2D3 Nonsense_Mutation p.E429* 0.37 TCGA-HU-8249-01 3 54958856 54958856 T C LRTM1 Missense_Mutation p.N132D 0.36 deleterious(0) probably_damaging(1) TCGA-HU-8249-01 3 56667109 56667109 T C FAM208A Missense_Mutation p.H1237R 0.41 deleterious(0) probably_damaging(0.986) TCGA-HU-8249-01 3 77572049 77572049 C G ROBO2 Silent p.V326V 0.36 TCGA-HU-8249-01 4 102004367 102004367 C T PPP3CA Missense_Mutation p.R279Q 0.39 deleterious(0) probably_damaging(0.969) TCGA-HU-8249-01 4 122607448 122607448 C T ANXA5 Missense_Mutation p.G30D 0.43 deleterious(0) probably_damaging(1) TCGA-HU-8249-01 4 123268832 123268832 A G KIAA1109 Missense_Mutation p.M4343V 0.51 benign(0) TCGA-HU-8249-01 4 170483003 170483003 C G NEK1 Missense_Mutation p.E374Q 0.44 deleterious(0.03) probably_damaging(0.96) TCGA-HU-8249-01 4 176594963 176594963 G T GPM6A Silent p.I85I 0.38 TCGA-HU-8249-01 4 21305486 21305486 A G KCNIP4 Intron 0.14 TCGA-HU-8249-01 4 47570926 47570926 G A ATP10D Missense_Mutation p.V976M 0.27 tolerated(0.24) possibly_damaging(0.516) TCGA-HU-8249-01 4 66361149 66361149 A T EPHA5 Missense_Mutation p.D341E 0.44 deleterious(0.03) benign(0.006) TCGA-HU-8249-01 5 140176666 140176666 C T PCDHA2 Missense_Mutation p.A706V 0.83 deleterious_low_confidence(0.02) benign(0.055) TCGA-HU-8249-01 5 150932811 150932811 C T FAT2 Silent p.T1361T 0.21 TCGA-HU-8249-01 5 176003123 176003123 C T CDHR2 Silent p.D377D 0.08 TCGA-HU-8249-01 5 19747254 19747254 G A CDH18 Missense_Mutation p.T107M 0.34 deleterious(0) probably_damaging(0.999) TCGA-HU-8249-01 5 24492978 24492979 - C CDH10 Frame_Shift_Ins p.F524Lfs*17 0.25 TCGA-HU-8249-01 5 33937024 33937024 C T RXFP3 Missense_Mutation p.A60V 0.46 tolerated(0.07) benign(0.084) TCGA-HU-8249-01 5 41149449 41149449 G A C6 Silent p.D839D 0.36 TCGA-HU-8249-01 5 89943472 89943472 G A GPR98 Silent p.T1060T 0.21 TCGA-HU-8249-01 5 94803591 94803591 T G TTC37 Missense_Mutation p.K1533N 0.81 deleterious(0) probably_damaging(0.999) TCGA-HU-8249-01 6 100895235 100895235 C T SIM1 Missense_Mutation p.G303S 0.37 deleterious(0.01) probably_damaging(1) TCGA-HU-8249-01 6 112460383 112460383 C T LAMA4 Missense_Mutation p.R1074H 0.39 deleterious(0) probably_damaging(0.999) TCGA-HU-8249-01 6 122733900 122733900 T G HSF2 Missense_Mutation p.I107M 0.34 deleterious(0) probably_damaging(0.999) TCGA-HU-8249-01 6 130762455 130762455 T G TMEM200A Missense_Mutation p.N296K 0.36 deleterious(0) probably_damaging(0.996) TCGA-HU-8249-01 6 169637779 169637779 G C THBS2 Missense_Mutation p.T414S 0.45 tolerated(0.81) benign(0.034) TCGA-HU-8249-01 6 32017144 32017144 G A TNXB 5'Flank 0.53 TCGA-HU-8249-01 6 33373998 33373998 G T KIFC1 Missense_Mutation p.R521L 0.44 tolerated(0.06) benign(0.231) TCGA-HU-8249-01 6 38747759 38747759 T A DNAH8 Missense_Mutation p.I469N 0.30 benign(0.005) TCGA-HU-8249-01 6 43183962 43183964 AGT - CUL9 In_Frame_Del p.V2002del 0.31 TCGA-HU-8249-01 6 44224424 44224424 G T SLC35B2 Missense_Mutation p.T68N 0.24 tolerated(0.34) benign(0.017) TCGA-HU-8249-01 6 46656738 46656738 G A TDRD6 Silent p.T291T 0.17 TCGA-HU-8249-01 6 78172800 78172800 G A HTR1B Silent p.T107T 0.39 TCGA-HU-8249-01 7 100685100 100685100 C T MUC17 Missense_Mutation p.T3468M 0.22 possibly_damaging(0.556) TCGA-HU-8249-01 7 113519431 113519431 G T PPP1R3A Silent p.I572I 0.47 TCGA-HU-8249-01 7 117432339 117432339 G A CTTNBP2 Missense_Mutation p.S304F 0.49 deleterious(0) possibly_damaging(0.677) TCGA-HU-8249-01 7 121941928 121941928 C T FEZF1 3'UTR 0.16 TCGA-HU-8249-01 7 146471395 146471395 C A CNTNAP2 Missense_Mutation p.P44T 0.30 deleterious(0) benign(0.001) TCGA-HU-8249-01 7 155530991 155530991 G A RBM33 Missense_Mutation p.S544N 0.51 tolerated(1) benign(0.003) TCGA-HU-8249-01 8 59059489 59059489 G A FAM110B Missense_Mutation p.A234T 0.47 tolerated(0.46) benign(0) TCGA-HU-8249-01 8 79510750 79510750 G A PKIA Missense_Mutation p.G44D 0.22 tolerated(0.22) benign(0.007) TCGA-HU-8249-01 8 87641191 87641191 A G CNGB3 Missense_Mutation p.V479A 0.30 deleterious(0) probably_damaging(0.967) TCGA-HU-8249-01 9 100616561 100616561 G A FOXE1 Missense_Mutation p.G122D 0.28 deleterious(0) probably_damaging(1) TCGA-HU-8249-01 9 106874035 106874035 T C SMC2 Silent p.L398L 0.24 TCGA-HU-8249-01 9 107289406 107289406 C T OR13C4 Missense_Mutation p.A29T 0.20 deleterious(0) benign(0.075) TCGA-HU-8249-01 9 109688314 109688314 T G ZNF462 Missense_Mutation p.I707M 0.52 probably_damaging(0.993) TCGA-HU-8249-01 9 125424622 125424622 C G OR1L1 Missense_Mutation p.P210A 0.14 deleterious(0.01) probably_damaging(0.913) TCGA-HU-8249-01 9 131353779 131353779 C T SPTAN1 Silent p.N1010N 0.41 TCGA-HU-8249-01 9 131764194 131764194 C T NUP188 Missense_Mutation p.T1359I 0.29 tolerated(0.4) benign(0.035) TCGA-HU-8249-01 9 27950155 27950155 G T LINGO2 Missense_Mutation p.A172E 0.47 deleterious(0) probably_damaging(0.998) TCGA-HU-8249-01 9 35697858 35697858 C T TLN1 Missense_Mutation p.R2519Q 0.39 deleterious(0.02) probably_damaging(0.968) TCGA-HU-8249-01 9 95179787 95179787 T C OMD Silent p.V18V 0.17 TCGA-HU-8249-01 X 107413932 107413932 C A COL4A6 Missense_Mutation p.A1135S 0.80 benign(0.349) TCGA-HU-8249-01 X 130410118 130410118 C T IGSF1 Missense_Mutation p.A910T 0.28 tolerated(0.08) probably_damaging(0.963) TCGA-HU-8249-01 X 144904389 144904389 T C SLITRK2 Missense_Mutation p.I149T 0.80 deleterious(0) probably_damaging(0.992) TCGA-HU-8249-01 X 23411150 23411150 T A PTCHD1 Silent p.V505V 0.83 TCGA-HU-8249-01 X 48631908 48631908 C A GLOD5 3'UTR 0.08 TCGA-HU-8249-01 X 48678618 48678618 C A HDAC6 Missense_Mutation p.L765M 0.86 tolerated(0.25) possibly_damaging(0.641) TCGA-HU-8249-01 X 53241008 53241008 G A KDM5C Silent p.A401A 0.84 TCGA-HU-8249-01 X 66863123 66863123 T G AR Missense_Mutation p.L548V 0.73 deleterious(0.01) benign(0.243) TCGA-HU-8602-01 10 101841263 101841263 G A CPN1 Silent p.N40N 0.19 TCGA-HU-8602-01 10 102255254 102255254 G A SEC31B Missense_Mutation p.A787V 0.27 tolerated(0.24) benign(0.018) TCGA-HU-8602-01 10 103339944 103339944 G - POLL Intron 0.14 TCGA-HU-8602-01 10 103371071 103371071 C T FBXW4 Missense_Mutation p.V406I 0.29 tolerated(0.4) benign(0.003) TCGA-HU-8602-01 10 105362558 105362558 G A SH3PXD2A Missense_Mutation p.T778M 0.18 tolerated(0.08) benign(0.036) TCGA-HU-8602-01 10 105799276 105799276 C A COL17A1 Silent p.G941G 0.20 TCGA-HU-8602-01 10 106128190 106128191 GA - CCDC147 Frame_Shift_Del p.R269Sfs*14 0.15 TCGA-HU-8602-01 10 108447969 108447970 - C SORCS1 Frame_Shift_Ins p.D514Gfs*20 0.15 TCGA-HU-8602-01 10 108923764 108923764 T C SORCS1 Missense_Mutation p.N174S 0.18 deleterious(0.02) possibly_damaging(0.831) TCGA-HU-8602-01 10 111987987 111987987 G A MXI1 Silent p.P105P 0.26 TCGA-HU-8602-01 10 112748709 112748709 G A SHOC2 Intron 0.15 TCGA-HU-8602-01 10 114045827 114045827 A G TECTB Splice_Site p.X90_splice 0.16 TCGA-HU-8602-01 10 114136115 114136117 GAA - ACSL5 In_Frame_Del p.K18del 0.25 TCGA-HU-8602-01 10 115365607 115365607 G A NRAP Missense_Mutation p.R1277C 0.14 tolerated(0.06) benign(0.007) TCGA-HU-8602-01 10 115365959 115365959 G A NRAP Missense_Mutation p.T1262M 0.11 tolerated(0.15) benign(0.025) TCGA-HU-8602-01 10 115489357 115489357 T - CASP7 3'UTR 0.14 TCGA-HU-8602-01 10 115661633 115661633 G A NHLRC2 Missense_Mutation p.V450I 0.16 tolerated(0.07) benign(0.052) TCGA-HU-8602-01 10 116198969 116198969 C T ABLIM1 Missense_Mutation p.R703Q 0.19 tolerated(0.06) benign(0.075) TCGA-HU-8602-01 10 117856254 117856254 A - GFRA1 Frame_Shift_Del p.F264Lfs*15 0.17 TCGA-HU-8602-01 10 118441370 118441370 C T HSPA12A Missense_Mutation p.R285H 0.07 tolerated(0.06) benign(0.33) TCGA-HU-8602-01 10 118960782 118960782 G A KCNK18 Silent p.T112T 0.10 TCGA-HU-8602-01 10 119043937 119043937 G A PDZD8 Silent p.T769T 0.22 TCGA-HU-8602-01 10 120353598 120353598 G T PRLHR 3'UTR 0.11 TCGA-HU-8602-01 10 121429488 121429488 C T BAG3 Silent p.G102G 0.15 TCGA-HU-8602-01 10 121663641 121663641 G A SEC23IP Missense_Mutation p.R318H 0.15 deleterious(0) probably_damaging(0.999) TCGA-HU-8602-01 10 123274774 123274774 A G FGFR2 Missense_Mutation p.C383R 0.12 deleterious(0.02) probably_damaging(0.974) TCGA-HU-8602-01 10 123970676 123970676 A G TACC2 Missense_Mutation p.T2246A 0.13 benign(0.245) TCGA-HU-8602-01 10 124358347 124358347 G A DMBT1 Missense_Mutation p.R1005Q 0.15 deleterious(0) probably_damaging(0.972) TCGA-HU-8602-01 10 124921819 124921821 AGA - BUB3 In_Frame_Del p.K218del 0.16 TCGA-HU-8602-01 10 126370548 126370548 G T FAM53B Silent p.S178S 0.15 TCGA-HU-8602-01 10 126370610 126370610 C T FAM53B Missense_Mutation p.G158S 0.10 deleterious(0.05) probably_damaging(0.982) TCGA-HU-8602-01 10 127412385 127412385 A - EDRF1 Frame_Shift_Del p.K132Nfs*3 0.19 TCGA-HU-8602-01 10 127677260 127677260 G A FANK1 Intron 0.13 TCGA-HU-8602-01 10 131761997 131761997 C - EBF3 Frame_Shift_Del p.T13Rfs*3 0.17 TCGA-HU-8602-01 10 134144952 134144952 C - LRRC27 5'Flank 0.14 TCGA-HU-8602-01 10 134219688 134219688 A G PWWP2B Missense_Mutation p.M562V 0.19 tolerated(0.15) benign(0.007) TCGA-HU-8602-01 10 134230688 134230688 C - PWWP2B 3'UTR 0.20 TCGA-HU-8602-01 10 134595573 134595573 C T INPP5A 3'UTR 0.17 TCGA-HU-8602-01 10 134628225 134628225 G - TTC40 Frame_Shift_Del p.P2405Lfs*5 0.21 TCGA-HU-8602-01 10 135015094 135015094 C T KNDC1 Missense_Mutation p.R1027W 0.18 deleterious(0.01) possibly_damaging(0.676) TCGA-HU-8602-01 10 135211971 135211971 A - MTG1 Frame_Shift_Del p.N107Mfs*8 0.24 TCGA-HU-8602-01 10 14862006 14862006 T C CDNF Silent p.A179A 0.17 TCGA-HU-8602-01 10 15649742 15649742 G A ITGA8 Silent p.R566R 0.14 TCGA-HU-8602-01 10 24820809 24820809 C - KIAA1217 Frame_Shift_Del p.P1046Lfs*88 0.19 TCGA-HU-8602-01 10 25279480 25279480 T C ENKUR Missense_Mutation p.Q169R 0.16 tolerated(0.09) possibly_damaging(0.461) TCGA-HU-8602-01 10 25886977 25886977 A - GPR158 Frame_Shift_Del p.N809Tfs*16 0.10 TCGA-HU-8602-01 10 26359088 26359089 - T MYO3A Frame_Shift_Ins p.A409Cfs*4 0.19 TCGA-HU-8602-01 10 27400933 27400933 A G YME1L1 Silent p.L765L 0.15 TCGA-HU-8602-01 10 286020 286020 C T ZMYND11 Missense_Mutation p.A241V 0.20 deleterious(0) probably_damaging(0.992) TCGA-HU-8602-01 10 29769643 29769643 G A SVIL Missense_Mutation p.R1734C 0.15 deleterious(0) probably_damaging(0.976) TCGA-HU-8602-01 10 30315149 30315149 G A KIAA1462 Missense_Mutation p.R1310C 0.22 deleterious(0.03) benign(0.409) TCGA-HU-8602-01 10 30318056 30318056 C T KIAA1462 Missense_Mutation p.V341M 0.20 deleterious(0) probably_damaging(0.997) TCGA-HU-8602-01 10 32974953 32974953 A - C10ORF68 Frame_Shift_Del p.T35Pfs*5 0.16 TCGA-HU-8602-01 10 33134495 33134495 A G C10ORF68 Missense_Mutation p.Y397C 0.15 tolerated(0.08) possibly_damaging(0.54) TCGA-HU-8602-01 10 33209310 33209310 G T ITGB1 Missense_Mutation p.L378I 0.16 deleterious(0) probably_damaging(0.982) TCGA-HU-8602-01 10 34620201 34620201 C T PARD3 Missense_Mutation p.A896T 0.22 deleterious(0) probably_damaging(0.981) TCGA-HU-8602-01 10 35351916 35351916 A - CUL2 Frame_Shift_Del p.L84Wfs*54 0.21 TCGA-HU-8602-01 10 37430789 37430790 - A ANKRD30A Frame_Shift_Ins p.T268Nfs*3 0.09 TCGA-HU-8602-01 10 395273 395273 G - DIP2C Frame_Shift_Del p.P1036Qfs*3 0.19 TCGA-HU-8602-01 10 410451 410451 G A DIP2C Silent p.F780F 0.18 TCGA-HU-8602-01 10 43600617 43600617 C T RET Silent p.A281A 0.15 TCGA-HU-8602-01 10 43615133 43615133 C T RET Silent p.G849G 0.14 TCGA-HU-8602-01 10 45430248 45430248 C T TMEM72 Missense_Mutation p.T165I 0.18 deleterious(0) possibly_damaging(0.901) TCGA-HU-8602-01 10 45478063 45478063 T C RASSF4 Missense_Mutation p.V78A 0.11 tolerated(0.09) benign(0.004) TCGA-HU-8602-01 10 45907734 45907734 T C ALOX5 Missense_Mutation p.V176A 0.15 tolerated(0.38) benign(0.085) TCGA-HU-8602-01 10 48388658 48388658 G A RBP3 Silent p.P740P 0.13 TCGA-HU-8602-01 10 48426628 48426628 C T GDF10 Missense_Mutation p.R460Q 0.11 tolerated(0.07) benign(0.099) TCGA-HU-8602-01 10 48429418 48429418 G A GDF10 Silent p.N156N 0.31 TCGA-HU-8602-01 10 50532147 50532147 C A C10orf71 Silent p.L519L 0.17 TCGA-HU-8602-01 10 50736537 50736537 T - ERCC6-PGBD3 Frame_Shift_Del p.K193Sfs*12 0.15 TCGA-HU-8602-01 10 50953529 50953529 C T OGDHL Missense_Mutation p.R497Q 0.18 deleterious(0) probably_damaging(0.975) TCGA-HU-8602-01 10 5951237 5951237 G A FBXO18 Missense_Mutation p.D385N 0.05 deleterious(0.02) probably_damaging(0.988) TCGA-HU-8602-01 10 61414180 61414180 T - SLC16A9 Frame_Shift_Del p.I202* 0.18 TCGA-HU-8602-01 10 61831926 61831926 G A ANK3 Missense_Mutation p.R2905C 0.16 benign(0.04) TCGA-HU-8602-01 10 61833923 61833923 C T ANK3 Missense_Mutation p.R2239H 0.14 probably_damaging(0.98) TCGA-HU-8602-01 10 62648135 62648135 C T RHOBTB1 Missense_Mutation p.V431M 0.15 tolerated(1) benign(0.012) TCGA-HU-8602-01 10 6274870 6274870 T C PFKFB3 Missense_Mutation p.S510P 0.20 benign(0.001) TCGA-HU-8602-01 10 63850705 63850705 A - ARID5B Frame_Shift_Del p.I497* 0.16 TCGA-HU-8602-01 10 64949189 64949189 C T JMJD1C Silent p.R2103R 0.22 TCGA-HU-8602-01 10 69565466 69565466 T - DNAJC12 Frame_Shift_Del p.N126Mfs*30 0.17 TCGA-HU-8602-01 10 69669161 69669161 G A SIRT1 Missense_Mutation p.G440E 0.15 deleterious(0) probably_damaging(1) TCGA-HU-8602-01 10 70666693 70666693 A - DDX50 Frame_Shift_Del p.K107Nfs*8 0.18 TCGA-HU-8602-01 10 70670982 70670982 A - DDX50 Frame_Shift_Del p.S209Afs*19 0.13 TCGA-HU-8602-01 10 71905285 71905285 C T TYSND1 Missense_Mutation p.G353D 0.38 deleterious(0) possibly_damaging(0.873) TCGA-HU-8602-01 10 72061008 72061008 C T LRRC20 3'UTR 0.27 TCGA-HU-8602-01 10 72061117 72061118 - G LRRC20 Frame_Shift_Ins p.L183Pfs*59 0.16 TCGA-HU-8602-01 10 72300969 72300969 G A PALD1 Missense_Mutation p.V674M 0.19 tolerated(0.09) benign(0.149) TCGA-HU-8602-01 10 72324139 72324139 C T PALD1 Missense_Mutation p.A761V 0.17 deleterious(0.02) benign(0.25) TCGA-HU-8602-01 10 72358408 72358408 G A PRF1 Missense_Mutation p.R357W 0.22 deleterious(0) probably_damaging(0.995) TCGA-HU-8602-01 10 72493711 72493711 C - ADAMTS14 Frame_Shift_Del p.L431Wfs*165 0.18 TCGA-HU-8602-01 10 72520166 72520166 G A ADAMTS14 Missense_Mutation p.D1080N 0.18 tolerated(0.15) benign(0.048) TCGA-HU-8602-01 10 73767333 73767333 G A CHST3 Missense_Mutation p.A182T 0.11 tolerated(0.75) possibly_damaging(0.636) TCGA-HU-8602-01 10 74645550 74645550 G A MCU Silent p.L342L 0.20 TCGA-HU-8602-01 10 74660135 74660136 - T OIT3 Frame_Shift_Ins p.Y148Lfs*2 0.13 TCGA-HU-8602-01 10 75545818 75545818 G T ZSWIM8 Missense_Mutation p.G61V 0.25 tolerated(0.51) benign(0.024) TCGA-HU-8602-01 10 75553626 75553628 AAG - ZSWIM8 In_Frame_Del p.K818del 0.18 TCGA-HU-8602-01 10 75567575 75567575 A - NDST2 Frame_Shift_Del p.L191Yfs*12 0.16 TCGA-HU-8602-01 10 75832550 75832550 C T VCL Nonsense_Mutation p.R188* 0.25 TCGA-HU-8602-01 10 75848967 75848967 T C VCL Missense_Mutation p.S346P 0.15 deleterious(0.01) possibly_damaging(0.464) TCGA-HU-8602-01 10 7657989 7657989 C T ITIH5 Missense_Mutation p.V299M 0.13 deleterious(0) probably_damaging(0.946) TCGA-HU-8602-01 10 79556237 79556237 A C DLG5 Silent p.A1760A 0.17 TCGA-HU-8602-01 10 79581283 79581284 - G DLG5 Frame_Shift_Ins p.K987Qfs*37 0.14 TCGA-HU-8602-01 10 81067236 81067236 A G ZMIZ1 Missense_Mutation p.M915V 0.23 benign(0.001) TCGA-HU-8602-01 10 82098164 82098164 A - DYDC1 Intron 0.25 TCGA-HU-8602-01 10 83635508 83635508 G A NRG3 Missense_Mutation p.A138T 0.16 tolerated(0.12) benign(0.002) TCGA-HU-8602-01 10 85991648 85991648 G T LRIT1 3'UTR 0.11 TCGA-HU-8602-01 10 85994017 85994017 C T LRIT1 Missense_Mutation p.R236H 0.16 tolerated(0.07) possibly_damaging(0.899) TCGA-HU-8602-01 10 86008679 86008679 C T RGR Missense_Mutation p.R84C 0.20 deleterious(0.05) possibly_damaging(0.84) TCGA-HU-8602-01 10 88476506 88476506 G A LDB3 Missense_Mutation p.G557S 0.19 deleterious(0.03) probably_damaging(0.998) TCGA-HU-8602-01 10 88769540 88769540 G A RP11-96C23.10 3'Flank 0.08 TCGA-HU-8602-01 10 890939 890939 T - LARP4B Frame_Shift_Del p.T163Hfs*47 0.17 TCGA-HU-8602-01 10 90342849 90342849 C A RNLS Missense_Mutation p.W33C 0.15 deleterious(0) probably_damaging(0.999) TCGA-HU-8602-01 10 90350382 90350382 C T LIPJ 5'UTR 0.20 TCGA-HU-8602-01 10 91066050 91066050 G A IFIT2 Missense_Mutation p.V113I 0.22 deleterious(0) benign(0.001) TCGA-HU-8602-01 10 93768864 93768864 G A BTAF1 Silent p.P1334P 0.19 TCGA-HU-8602-01 10 94388618 94388618 A - KIF11 Frame_Shift_Del p.I426Lfs*8 0.27 TCGA-HU-8602-01 10 94409745 94409745 T C KIF11 Splice_Site p.X974_splice 0.22 TCGA-HU-8602-01 10 94454563 94454563 A G HHEX 3'UTR 0.19 TCGA-HU-8602-01 10 96005895 96005895 C T PLCE1 Silent p.D871D 0.15 TCGA-HU-8602-01 10 96076482 96076482 T C PLCE1 Missense_Mutation p.M2104T 0.13 tolerated(0.11) benign(0) TCGA-HU-8602-01 10 96117058 96117058 A G NOC3L Silent p.H127H 0.18 TCGA-HU-8602-01 10 96352252 96352252 A G HELLS Missense_Mutation p.Y651C 0.20 tolerated(0.12) benign(0.179) TCGA-HU-8602-01 10 97918856 97918856 A - ZNF518A RNA 0.54 TCGA-HU-8602-01 10 98715288 98715288 T C LCOR Missense_Mutation p.M304T 0.23 deleterious(0.05) benign(0.002) TCGA-HU-8602-01 10 98763959 98763959 C A SLIT1 Missense_Mutation p.G1244V 0.17 deleterious(0) probably_damaging(0.998) TCGA-HU-8602-01 10 99215505 99215507 AAG - ZDHHC16 In_Frame_Del p.K306del 0.18 TCGA-HU-8602-01 10 99400524 99400525 - C PI4K2A Frame_Shift_Ins p.E11Rfs*99 0.14 TCGA-HU-8602-01 11 100061980 100061980 T C CNTN5 Missense_Mutation p.V568A 0.17 deleterious(0) possibly_damaging(0.859) TCGA-HU-8602-01 11 102709964 102709964 G A MMP3 Missense_Mutation p.R316C 0.16 deleterious(0) probably_damaging(1) TCGA-HU-8602-01 11 10626010 10626010 C T MRVI1 Missense_Mutation p.R562H 0.19 deleterious(0) probably_damaging(1) TCGA-HU-8602-01 11 108412488 108412488 A G EXPH5 Silent p.G57G 0.29 TCGA-HU-8602-01 11 111594537 111594537 A C SIK2 Missense_Mutation p.Q822P 0.22 tolerated_low_confidence(0.24) benign(0) TCGA-HU-8602-01 11 113281333 113281333 G - DRD2 3'UTR 0.22 TCGA-HU-8602-01 11 113610032 113610032 C T ZW10 Silent p.L552L 0.23 TCGA-HU-8602-01 11 113660140 113660140 C A ATF4P4 RNA 0.24 TCGA-HU-8602-01 11 113857354 113857354 G T HTR3A Missense_Mutation p.V280F 0.26 deleterious(0) possibly_damaging(0.781) TCGA-HU-8602-01 11 114027109 114027109 G A ZBTB16 Missense_Mutation p.R440Q 0.22 tolerated(0.11) benign(0.019) TCGA-HU-8602-01 11 114392621 114392621 T G NXPE1 3'UTR 0.18 TCGA-HU-8602-01 11 11454305 11454305 A G GALNT18 Missense_Mutation p.L153P 0.18 deleterious(0) probably_damaging(0.915) TCGA-HU-8602-01 11 115080374 115080374 G T CADM1 Missense_Mutation p.P333H 0.21 tolerated(0.14) benign(0.002) TCGA-HU-8602-01 11 117063319 117063319 G A SIDT2 Missense_Mutation p.V671M 0.22 deleterious(0.01) probably_damaging(0.921) TCGA-HU-8602-01 11 117342716 117342716 A G DSCAML1 Missense_Mutation p.S1001P 0.26 tolerated(0.17) probably_damaging(1) TCGA-HU-8602-01 11 117389198 117389198 G A DSCAML1 Missense_Mutation p.A558V 0.26 tolerated(0.12) probably_damaging(0.998) TCGA-HU-8602-01 11 117651377 117651377 G A DSCAML1 Silent p.D125D 0.18 TCGA-HU-8602-01 11 118371787 118371787 G A KMT2A Missense_Mutation p.V2082I 0.22 benign(0.004) TCGA-HU-8602-01 11 118498952 118498952 G A PHLDB1 Silent p.P471P 0.23 TCGA-HU-8602-01 11 118509928 118509928 G - PHLDB1 Frame_Shift_Del p.G900Afs*22 0.17 TCGA-HU-8602-01 11 118770197 118770197 T C BCL9L Missense_Mutation p.S1143G 0.27 benign(0) TCGA-HU-8602-01 11 118919830 118919830 T G HYOU1 Missense_Mutation p.E631A 0.19 tolerated(0.1) benign(0.021) TCGA-HU-8602-01 11 118982019 118982019 T C C2CD2L Missense_Mutation p.I282T 0.22 tolerated(0.52) benign(0.001) TCGA-HU-8602-01 11 11954637 11954637 C T USP47 Nonsense_Mutation p.R512* 0.22 TCGA-HU-8602-01 11 119549183 119549183 G A PVRL1 Silent p.C124C 0.25 TCGA-HU-8602-01 11 11974317 11974317 C T USP47 Missense_Mutation p.L1137F 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-HU-8602-01 11 121414327 121414327 C A SORL1 Missense_Mutation p.L586I 0.19 deleterious(0.02) possibly_damaging(0.881) TCGA-HU-8602-01 11 121448077 121448077 G A SORL1 Missense_Mutation p.C1183Y 0.23 deleterious(0) probably_damaging(1) TCGA-HU-8602-01 11 122848370 122848370 G T BSX Missense_Mutation p.P230Q 0.18 tolerated_low_confidence(0.16) benign(0.014) TCGA-HU-8602-01 11 123481017 123481017 C A GRAMD1B Silent p.T487T 0.19 TCGA-HU-8602-01 11 124135000 124135000 C A OR8G5 Missense_Mutation p.P93H 0.11 deleterious(0) probably_damaging(0.978) TCGA-HU-8602-01 11 126124235 126124235 C T FAM118B Silent p.S201S 0.28 TCGA-HU-8602-01 11 129725622 129725622 C T TMEM45B Silent p.H135H 0.20 TCGA-HU-8602-01 11 130278728 130278728 G A ADAMTS8 Missense_Mutation p.R620W 0.24 deleterious(0) probably_damaging(0.997) TCGA-HU-8602-01 11 132307169 132307169 G A OPCML Missense_Mutation p.A204V 0.25 deleterious(0) probably_damaging(0.985) TCGA-HU-8602-01 11 14515947 14515947 T C COPB1 Missense_Mutation p.K44E 0.28 tolerated(0.08) benign(0.119) TCGA-HU-8602-01 11 15262062 15262062 C T INSC Missense_Mutation p.A535V 0.35 deleterious(0) probably_damaging(1) TCGA-HU-8602-01 11 18636709 18636709 G A SPTY2D1 Missense_Mutation p.P371L 0.21 deleterious(0.05) possibly_damaging(0.713) TCGA-HU-8602-01 11 18729360 18729360 G A IGSF22 Missense_Mutation p.R1091C 0.50 tolerated(0.17) benign(0.003) TCGA-HU-8602-01 11 1908789 1908789 C A LSP1 Missense_Mutation p.P467H 0.10 deleterious_low_confidence(0) probably_damaging(1) TCGA-HU-8602-01 11 193728 193728 G T SCGB1C1 Missense_Mutation p.E24D 0.10 tolerated(0.12) benign(0.007) TCGA-HU-8602-01 11 22281077 22281077 G A ANO5 Missense_Mutation p.V474I 0.24 tolerated(1) benign(0.004) TCGA-HU-8602-01 11 27390168 27390168 G A LGR4 Missense_Mutation p.T701M 0.30 deleterious(0) possibly_damaging(0.86) TCGA-HU-8602-01 11 32955335 32955335 G A QSER1 Missense_Mutation p.G715D 0.11 tolerated(0.24) benign(0.011) TCGA-HU-8602-01 11 33667450 33667450 C T KIAA1549L Silent p.Y1579Y 0.30 TCGA-HU-8602-01 11 33689437 33689437 A G KIAA1549L Missense_Mutation p.I1763V 0.30 tolerated(0.11) probably_damaging(0.99) TCGA-HU-8602-01 11 3429947 3429947 G A TSSC2 RNA 0.24 TCGA-HU-8602-01 11 3846332 3846332 G A PGAP2 Missense_Mutation p.R264Q 0.20 deleterious(0.01) probably_damaging(0.981) TCGA-HU-8602-01 11 44077743 44077743 C T ACCSL Silent p.G398G 0.23 TCGA-HU-8602-01 11 45924210 45924210 G A MAPK8IP1 Missense_Mutation p.A298T 0.29 tolerated(0.43) benign(0.002) TCGA-HU-8602-01 11 45955682 45955682 C T PHF21A Missense_Mutation p.G627D 0.18 tolerated(0.06) benign(0.018) TCGA-HU-8602-01 11 47074001 47074001 C - C11orf49 Frame_Shift_Del p.H73Tfs*24 0.19 TCGA-HU-8602-01 11 47828676 47828676 G A NUP160 Missense_Mutation p.H798Y 0.33 deleterious(0.01) possibly_damaging(0.863) TCGA-HU-8602-01 11 55065643 55065643 A - TRIM51HP RNA 0.22 TCGA-HU-8602-01 11 55111357 55111357 T C OR4A16 Silent p.S227S 0.24 TCGA-HU-8602-01 11 5529402 5529402 A - UBQLN3 Frame_Shift_Del p.S463Pfs*24 0.25 TCGA-HU-8602-01 11 558069 558069 G - C11orf35 Intron 0.23 TCGA-HU-8602-01 11 56057709 56057709 T C OR8H1 Missense_Mutation p.Y277C 0.26 deleterious(0) probably_damaging(0.996) TCGA-HU-8602-01 11 56344640 56344640 C T OR5M10 Missense_Mutation p.M186I 0.18 tolerated(0.13) benign(0.062) TCGA-HU-8602-01 11 56431837 56431837 A G OR5AR1 Missense_Mutation p.I226V 0.17 deleterious(0.01) benign(0.007) TCGA-HU-8602-01 11 57003207 57003207 C T APLNR 3'UTR 0.27 TCGA-HU-8602-01 11 5776934 5776934 T C OR52N4 Nonstop_Mutation p.*322Rext*7 0.17 TCGA-HU-8602-01 11 58877060 58877060 C T FAM111B 5'UTR 0.45 TCGA-HU-8602-01 11 60531390 60531390 C T MS4A15 Missense_Mutation p.P62S 0.30 deleterious(0.02) probably_damaging(0.952) TCGA-HU-8602-01 11 61254061 61254061 T C PPP1R32 Silent p.N271N 0.09 TCGA-HU-8602-01 11 62289451 62289451 G A AHNAK Silent p.D4146D 0.20 TCGA-HU-8602-01 11 62407174 62407174 A - GANAB Frame_Shift_Del p.L23* 0.22 TCGA-HU-8602-01 11 62760801 62760801 G A SLC22A8 Missense_Mutation p.R513W 0.29 deleterious(0.03) benign(0.001) TCGA-HU-8602-01 11 64030156 64030156 G A PLCB3 Missense_Mutation p.G744D 0.17 deleterious(0.01) probably_damaging(0.997) TCGA-HU-8602-01 11 64427988 64427988 G A NRXN2 Silent p.Y735Y 0.36 TCGA-HU-8602-01 11 64508341 64508341 A G RASGRP2 Intron 0.29 TCGA-HU-8602-01 11 64807275 64807275 G A SNX15 3'UTR 0.47 TCGA-HU-8602-01 11 64883043 64883043 A G TM7SF2 Missense_Mutation p.M357V 0.29 deleterious(0) probably_damaging(0.996) TCGA-HU-8602-01 11 64893233 64893233 G A MRPL49 Silent p.P130P 0.29 TCGA-HU-8602-01 11 64977350 64977350 G A CAPN1 Missense_Mutation p.E609K 0.20 deleterious(0) probably_damaging(0.964) TCGA-HU-8602-01 11 64981481 64981481 C - CAPN1 3'Flank 0.47 TCGA-HU-8602-01 11 65088674 65088674 C A CDC42EP2 Missense_Mutation p.P102H 0.26 deleterious(0) probably_damaging(1) TCGA-HU-8602-01 11 65124297 65124297 G A TIGD3 Missense_Mutation p.A340T 0.28 tolerated(0.08) benign(0.205) TCGA-HU-8602-01 11 65147336 65147336 A G SLC25A45 Splice_Site p.X51_splice 0.18 TCGA-HU-8602-01 11 65269444 65269444 A - MALAT1 RNA 0.18 TCGA-HU-8602-01 11 65271312 65271314 ATA - MALAT1 RNA 0.15 TCGA-HU-8602-01 11 65273024 65273024 T C MALAT1 RNA 0.25 TCGA-HU-8602-01 11 65305557 65305557 C T SCYL1 Silent p.D717D 0.42 TCGA-HU-8602-01 11 65314941 65314941 C T LTBP3 Silent p.R692R 0.23 TCGA-HU-8602-01 11 65347566 65347566 G A EHBP1L1 Silent p.Q109Q 0.28 TCGA-HU-8602-01 11 65385650 65385650 C T PCNXL3 Missense_Mutation p.R273C 0.22 deleterious(0.01) possibly_damaging(0.764) TCGA-HU-8602-01 11 65650137 65650137 C T CTSW Missense_Mutation p.A199V 0.23 deleterious(0) probably_damaging(1) TCGA-HU-8602-01 11 65650895 65650895 G T CTSW Missense_Mutation p.K340N 0.27 tolerated(0.18) benign(0.038) TCGA-HU-8602-01 11 66190273 66190273 G A NPAS4 Missense_Mutation p.V187M 0.24 deleterious(0) possibly_damaging(0.904) TCGA-HU-8602-01 11 66190305 66190305 G A NPAS4 Silent p.P197P 0.27 TCGA-HU-8602-01 11 6622242 6622242 G A RRP8 Missense_Mutation p.R321C 0.27 deleterious(0) possibly_damaging(0.885) TCGA-HU-8602-01 11 6629692 6629692 T - ILK Frame_Shift_Del p.W110Gfs*35 0.33 TCGA-HU-8602-01 11 6643309 6643309 C T DCHS1 Missense_Mutation p.D3200N 0.19 deleterious(0.01) probably_damaging(0.972) TCGA-HU-8602-01 11 66834229 66834229 C A RHOD Missense_Mutation p.L81M 0.19 deleterious(0.01) possibly_damaging(0.736) TCGA-HU-8602-01 11 67177159 67177159 C - TBC1D10C Frame_Shift_Del p.I428Sfs*126 0.19 TCGA-HU-8602-01 11 67208687 67208687 C T CORO1B Missense_Mutation p.R222Q 0.21 deleterious(0) benign(0.018) TCGA-HU-8602-01 11 67265420 67265420 C T PITPNM1 Missense_Mutation p.G584R 0.19 tolerated(0.32) benign(0.29) TCGA-HU-8602-01 11 67372298 67372298 C A C11orf72 Missense_Mutation p.K81N 0.22 possibly_damaging(0.607) TCGA-HU-8602-01 11 69514016 69514016 G T FGF19 3'UTR 0.24 TCGA-HU-8602-01 11 71146464 71146464 T C DHCR7 Missense_Mutation p.Y462C 0.16 deleterious(0) probably_damaging(1) TCGA-HU-8602-01 11 72695167 72695167 C T FCHSD2 Missense_Mutation p.R224H 0.26 tolerated(1) benign(0.028) TCGA-HU-8602-01 11 73825472 73825472 T - C2CD3 Frame_Shift_Del p.S563Afs*9 0.26 TCGA-HU-8602-01 11 75439929 75439929 C T MOGAT2 Missense_Mutation p.R249W 0.24 tolerated(0.18) benign(0.015) TCGA-HU-8602-01 11 78516393 78516393 G A TENM4 Missense_Mutation p.P708L 0.28 tolerated(0.7) benign(0.004) TCGA-HU-8602-01 11 86519991 86519991 A G PRSS23 3'UTR 0.33 TCGA-HU-8602-01 11 93808353 93808353 A C HEPHL1 Silent p.P506P 0.19 TCGA-HU-8602-01 11 94330984 94330984 G A PIWIL4 Missense_Mutation p.R428H 0.31 deleterious(0.03) possibly_damaging(0.676) TCGA-HU-8602-01 12 101603634 101603634 C T SLC5A8 5'UTR 0.18 TCGA-HU-8602-01 12 102128805 102128805 G A SYCP3 Missense_Mutation p.L85F 0.17 tolerated(0.07) probably_damaging(0.929) TCGA-HU-8602-01 12 104109638 104109638 C T STAB2 Missense_Mutation p.A1528V 0.18 deleterious(0) probably_damaging(1) TCGA-HU-8602-01 12 104155138 104155138 G T STAB2 Missense_Mutation p.G2437W 0.21 deleterious(0) probably_damaging(1) TCGA-HU-8602-01 12 104397048 104397048 T C GLT8D2 Missense_Mutation p.E50G 0.30 deleterious(0.05) benign(0.157) TCGA-HU-8602-01 12 104698567 104698567 G A EID3 Silent p.P285P 0.25 TCGA-HU-8602-01 12 104742171 104742171 G A TXNRD1 Missense_Mutation p.S641N 0.17 tolerated(0.08) benign(0) TCGA-HU-8602-01 12 105556575 105556575 A - KIAA1033 Frame_Shift_Del p.N1039Ifs*20 0.28 TCGA-HU-8602-01 12 106532331 106532331 A C NUAK1 Missense_Mutation p.L34R 0.35 tolerated(0.52) benign(0.004) TCGA-HU-8602-01 12 106831541 106831541 G A POLR3B Missense_Mutation p.E647K 0.16 deleterious(0.01) possibly_damaging(0.705) TCGA-HU-8602-01 12 107126786 107126786 C T RFX4 Missense_Mutation p.A528V 0.25 tolerated(0.35) benign(0.002) TCGA-HU-8602-01 12 10760484 10760484 T - MAGOHB Frame_Shift_Del p.I106* 0.25 TCGA-HU-8602-01 12 108917393 108917393 C T SART3 Silent p.T911T 0.22 TCGA-HU-8602-01 12 109577472 109577472 C T ACACB Missense_Mutation p.R88W 0.19 deleterious_low_confidence(0) benign(0.28) TCGA-HU-8602-01 12 109684178 109684178 C T ACACB Silent p.G1832G 0.27 TCGA-HU-8602-01 12 109895795 109895795 A G KCTD10 Splice_Site p.X158_splice 0.18 TCGA-HU-8602-01 12 110834095 110834095 A T ANAPC7 Missense_Mutation p.N122K 0.09 tolerated(1) benign(0.011) TCGA-HU-8602-01 12 110834100 110834100 C T ANAPC7 Missense_Mutation p.G121R 0.07 deleterious(0.02) benign(0.203) TCGA-HU-8602-01 12 111785603 111785603 G A CUX2 Missense_Mutation p.G1312D 0.14 tolerated_low_confidence(0.24) benign(0) TCGA-HU-8602-01 12 112668612 112668612 C T HECTD4 Missense_Mutation p.R1926H 0.24 probably_damaging(0.977) TCGA-HU-8602-01 12 112846344 112846346 CTT - RPL6 In_Frame_Del p.K39del 0.21 TCGA-HU-8602-01 12 114352803 114352803 G T RBM19 Silent p.A843A 0.13 TCGA-HU-8602-01 12 117423059 117423059 G A FBXW8 Missense_Mutation p.R295H 0.24 tolerated(1) benign(0.001) TCGA-HU-8602-01 12 117660596 117660596 T G NOS1 Missense_Mutation p.E1334A 0.31 deleterious(0) possibly_damaging(0.879) TCGA-HU-8602-01 12 118105362 118105362 C T KSR2 Missense_Mutation p.R363H 0.42 tolerated(0.13) benign(0.018) TCGA-HU-8602-01 12 119563240 119563240 G A SRRM4 Silent p.S190S 0.17 TCGA-HU-8602-01 12 120649757 120649757 C - PXN 3'UTR 0.22 TCGA-HU-8602-01 12 121205319 121205319 C T SPPL3 Missense_Mutation p.R284H 0.18 tolerated(0.12) probably_damaging(0.996) TCGA-HU-8602-01 12 121773377 121773377 G A ANAPC5 Silent p.A303A 0.13 TCGA-HU-8602-01 12 123798171 123798171 A - SBNO1 Frame_Shift_Del p.F1072Lfs*8 0.23 TCGA-HU-8602-01 12 124074934 124074934 C T TMED2 Missense_Mutation p.A140V 0.16 deleterious(0.02) benign(0.024) TCGA-HU-8602-01 12 12815320 12815320 C T GPR19 Silent p.V21V 0.19 TCGA-HU-8602-01 12 130184705 130184705 G - TMEM132D Frame_Shift_Del p.T207Rfs*75 0.22 TCGA-HU-8602-01 12 131283100 131283100 T - STX2 Frame_Shift_Del p.A253Lfs*14 0.26 TCGA-HU-8602-01 12 132546710 132546710 C T EP400 Missense_Mutation p.A2647V 0.17 possibly_damaging(0.682) TCGA-HU-8602-01 12 132632428 132632428 C - NOC4L Frame_Shift_Del p.A205Pfs*13 0.32 TCGA-HU-8602-01 12 14834327 14834327 A G GUCY2C Silent p.F232F 0.30 TCGA-HU-8602-01 12 18891439 18891439 C T CAPZA3 Silent p.G79G 0.19 TCGA-HU-8602-01 12 20522766 20522766 A G PDE3A Missense_Mutation p.D183G 0.10 tolerated(0.27) benign(0.001) TCGA-HU-8602-01 12 21176223 21176223 T C SLCO1B7 Splice_Site p.X196_splice 0.14 TCGA-HU-8602-01 12 22354738 22354738 C G ST8SIA1 Silent p.L273L 0.27 TCGA-HU-8602-01 12 26749901 26749901 T - ITPR2 Frame_Shift_Del p.N1390Mfs*17 0.22 TCGA-HU-8602-01 12 2705045 2705045 G A CACNA1C Missense_Mutation p.R890H 0.23 deleterious(0) probably_damaging(0.941) TCGA-HU-8602-01 12 2760892 2760892 G T CACNA1C Missense_Mutation p.E1392D 0.15 deleterious(0.03) possibly_damaging(0.574) TCGA-HU-8602-01 12 27813829 27813829 A - PPFIBP1 Frame_Shift_Del p.M308* 0.19 TCGA-HU-8602-01 12 29523049 29523049 A C ERGIC2 Silent p.S71S 0.19 TCGA-HU-8602-01 12 32491898 32491898 A G BICD1 Missense_Mutation p.T917A 0.09 tolerated_low_confidence(0.21) probably_damaging(0.952) TCGA-HU-8602-01 12 332299 332299 G A SLC6A13 Silent p.Y471Y 0.20 TCGA-HU-8602-01 12 33592552 33592552 C A SYT10 5'UTR 0.32 TCGA-HU-8602-01 12 34177009 34177009 T C ALG10 Missense_Mutation p.M95T 0.18 tolerated(0.18) benign(0.045) TCGA-HU-8602-01 12 42853627 42853627 T - PRICKLE1 Frame_Shift_Del p.N827Ifs*20 0.14 TCGA-HU-8602-01 12 42854130 42854130 G A PRICKLE1 Silent p.R659R 0.17 TCGA-HU-8602-01 12 4460458 4460458 C T C12orf5 Missense_Mutation p.A99V 0.17 deleterious(0.04) benign(0.015) TCGA-HU-8602-01 12 4479890 4479890 G A FGF23 Silent p.D125D 0.18 TCGA-HU-8602-01 12 46245318 46245318 G - ARID2 Frame_Shift_Del p.G1139Efs*17 0.16 TCGA-HU-8602-01 12 48361046 48361046 T C TMEM106C Splice_Site p.X219_splice 0.18 TCGA-HU-8602-01 12 49259519 49259519 A G RND1 Missense_Mutation p.V11A 0.14 tolerated(0.86) benign(0.178) TCGA-HU-8602-01 12 49431874 49431874 C - KMT2D Frame_Shift_Del p.V3089Wfs*30 0.20 TCGA-HU-8602-01 12 49433919 49433919 G T KMT2D Missense_Mutation p.P2545H 0.31 probably_damaging(0.962) TCGA-HU-8602-01 12 49935503 49935503 G A KCNH3 Missense_Mutation p.S134N 0.20 deleterious(0.01) possibly_damaging(0.665) TCGA-HU-8602-01 12 49994341 49994341 G A FAM186B Missense_Mutation p.P361L 0.19 tolerated(0.21) benign(0.02) TCGA-HU-8602-01 12 50052276 50052276 G A FMNL3 Missense_Mutation p.S185L 0.17 tolerated(0.19) benign(0.097) TCGA-HU-8602-01 12 5020658 5020658 C T KCNA1 Silent p.R38R 0.25 TCGA-HU-8602-01 12 53070955 53070955 T C KRT1 Missense_Mutation p.Q381R 0.21 deleterious(0.02) possibly_damaging(0.88) TCGA-HU-8602-01 12 53585642 53585642 C T ITGB7 Splice_Site p.X772_splice 0.20 TCGA-HU-8602-01 12 54639915 54639915 T C CBX5 Missense_Mutation p.M137V 0.32 deleterious(0) possibly_damaging(0.893) TCGA-HU-8602-01 12 55523806 55523807 - T OR9K2 Frame_Shift_Ins p.L88Pfs*8 0.22 TCGA-HU-8602-01 12 55524128 55524128 T - OR9K2 Frame_Shift_Del p.C194Afs*29 0.18 TCGA-HU-8602-01 12 55945307 55945307 T - OR6C4 Frame_Shift_Del p.F101Lfs*31 0.25 TCGA-HU-8602-01 12 56088079 56088079 C T ITGA7 Missense_Mutation p.R802Q 0.16 deleterious(0.04) benign(0.028) TCGA-HU-8602-01 12 56117811 56117812 - G RDH5 Frame_Shift_Ins p.A240Gfs*19 0.26 TCGA-HU-8602-01 12 56481648 56481648 A G ERBB3 Missense_Mutation p.H228R 0.21 deleterious(0) probably_damaging(1) TCGA-HU-8602-01 12 56489535 56489535 G A ERBB3 Missense_Mutation p.R667H 0.24 deleterious(0) probably_damaging(0.999) TCGA-HU-8602-01 12 5687530 5687530 A G ANO2 Splice_Site p.X796_splice 0.12 TCGA-HU-8602-01 12 57008967 57008967 G T BAZ2A Silent p.S189S 0.28 TCGA-HU-8602-01 12 57033768 57033768 A G ATP5B Missense_Mutation p.L428P 0.27 deleterious_low_confidence(0.02) probably_damaging(0.971) TCGA-HU-8602-01 12 57324050 57324050 C T SDR9C7 Missense_Mutation p.V174I 0.17 tolerated(1) benign(0.129) TCGA-HU-8602-01 12 57389505 57389505 G A GPR182 Missense_Mutation p.R171Q 0.20 tolerated(0.18) possibly_damaging(0.611) TCGA-HU-8602-01 12 57589962 57589962 G A LRP1 Missense_Mutation p.D2932N 0.22 probably_damaging(1) TCGA-HU-8602-01 12 57858504 57858504 G A GLI1 Missense_Mutation p.R81Q 0.20 deleterious(0) probably_damaging(0.99) TCGA-HU-8602-01 12 57861129 57861129 G A GLI1 Missense_Mutation p.R309Q 0.23 deleterious(0.04) possibly_damaging(0.653) TCGA-HU-8602-01 12 57919556 57919556 C - MBD6 Frame_Shift_Del p.P270Lfs*107 0.18 TCGA-HU-8602-01 12 6091088 6091088 C T VWF Missense_Mutation p.R2384Q 0.25 tolerated(0.19) possibly_damaging(0.602) TCGA-HU-8602-01 12 63195674 63195674 G - PPM1H Frame_Shift_Del p.T227Hfs*30 0.26 TCGA-HU-8602-01 12 66786223 66786223 C - GRIP1 Frame_Shift_Del p.D725Mfs*38 0.38 TCGA-HU-8602-01 12 68709980 68709980 C T MDM1 Silent p.T353T 0.28 TCGA-HU-8602-01 12 69265647 69265647 A G CPM Silent p.S116S 0.20 TCGA-HU-8602-01 12 69981979 69981979 C T CCT2 Missense_Mutation p.A128V 0.27 tolerated(0.1) benign(0.027) TCGA-HU-8602-01 12 7019089 7019089 G A LRRC23 Silent p.E219E 0.19 TCGA-HU-8602-01 12 7024935 7024935 A C ENO2 5'UTR 0.27 TCGA-HU-8602-01 12 70963520 70963520 T C PTPRB Missense_Mutation p.Y1190C 0.21 deleterious(0) probably_damaging(1) TCGA-HU-8602-01 12 71286727 71286727 A - PTPRR Frame_Shift_Del p.L30Wfs*27 0.13 TCGA-HU-8602-01 12 71314119 71314119 C T PTPRR Missense_Mutation p.A18T 0.18 tolerated_low_confidence(0.17) benign(0.048) TCGA-HU-8602-01 12 72315179 72315179 T C TBC1D15 Missense_Mutation p.V600A 0.19 deleterious(0) probably_damaging(0.992) TCGA-HU-8602-01 12 72355378 72355379 - T TPH2 Intron 0.09 TCGA-HU-8602-01 12 72666936 72666936 G A TRHDE Silent p.S126S 0.22 TCGA-HU-8602-01 12 7476894 7476894 C T ACSM4 Missense_Mutation p.T445M 0.28 deleterious(0) possibly_damaging(0.896) TCGA-HU-8602-01 12 75601285 75601285 C T KCNC2 Missense_Mutation p.R160H 0.26 deleterious(0) probably_damaging(0.985) TCGA-HU-8602-01 12 76739905 76739905 T - BBS10 Frame_Shift_Del p.K620Nfs*12 0.15 TCGA-HU-8602-01 12 77458398 77458398 T C E2F7 Silent p.L6L 0.15 TCGA-HU-8602-01 12 7842723 7842723 G A GDF3 Silent p.I282I 0.28 TCGA-HU-8602-01 12 85264403 85264403 A G SLC6A15 Missense_Mutation p.M450T 0.22 deleterious(0.03) probably_damaging(0.912) TCGA-HU-8602-01 12 94620985 94620985 G T PLXNC1 Missense_Mutation p.G652W 0.15 deleterious(0.02) benign(0.267) TCGA-HU-8602-01 12 96266209 96266210 - T CCDC38 Frame_Shift_Ins p.I437Dfs*13 0.10 TCGA-HU-8602-01 12 96389536 96389536 C T HAL Silent p.A51A 0.20 TCGA-HU-8602-01 13 101287360 101287360 C T TMTC4 Missense_Mutation p.R431H 0.21 deleterious(0) probably_damaging(1) TCGA-HU-8602-01 13 109793696 109793696 G A MYO16 Silent p.A1690A 0.22 TCGA-HU-8602-01 13 109859217 109859217 C T MYO16 3'UTR 0.17 TCGA-HU-8602-01 13 110804806 110804806 G A COL4A1 Silent p.P1601P 0.26 TCGA-HU-8602-01 13 113771112 113771113 - A F7 Frame_Shift_Ins p.R204Kfs*77 0.15 TCGA-HU-8602-01 13 113850525 113850525 C T PCID2 Missense_Mutation p.R147Q 0.24 deleterious(0.05) benign(0.009) TCGA-HU-8602-01 13 113900295 113900295 G A CUL4A Missense_Mutation p.G519D 0.26 tolerated(0.1) benign(0.004) TCGA-HU-8602-01 13 113978839 113978839 G A GRTP1 Silent p.R325R 0.33 TCGA-HU-8602-01 13 115004803 115004803 G A CDC16 Intron 0.20 TCGA-HU-8602-01 13 19747963 19747963 G - TUBA3C 3'UTR 0.22 TCGA-HU-8602-01 13 21396422 21396422 G A XPO4 Nonsense_Mutation p.R283* 0.22 TCGA-HU-8602-01 13 23909640 23909640 C A SACS Missense_Mutation p.R2792M 0.18 possibly_damaging(0.594) TCGA-HU-8602-01 13 24465776 24465776 A G C1QTNF9B Silent p.D218D 0.13 TCGA-HU-8602-01 13 24895558 24895558 T C AL359736.1 Missense_Mutation p.I3M 0.06 tolerated_low_confidence(0.08) benign(0.022) TCGA-HU-8602-01 13 25155840 25155840 G A RP11-556N21.1 RNA 0.28 TCGA-HU-8602-01 13 25466978 25466978 G A CENPJ Missense_Mutation p.R1007W 0.24 deleterious(0) possibly_damaging(0.462) TCGA-HU-8602-01 13 28014139 28014139 C T MTIF3 Silent p.A149A 0.17 TCGA-HU-8602-01 13 28964199 28964199 G A FLT1 Missense_Mutation p.T568M 0.19 tolerated(0.11) possibly_damaging(0.833) TCGA-HU-8602-01 13 30071435 30071435 G A MTUS2 Missense_Mutation p.E1224K 0.32 deleterious(0) probably_damaging(0.999) TCGA-HU-8602-01 13 32911321 32911322 - A BRCA2 Frame_Shift_Ins p.D946Rfs*13 0.18 TCGA-HU-8602-01 13 36125122 36125122 C T NBEA Silent p.S2253S 0.31 TCGA-HU-8602-01 13 36229862 36229862 A G NBEA Missense_Mutation p.I2759V 0.16 tolerated(0.23) benign(0.041) TCGA-HU-8602-01 13 36700232 36700232 G A DCLK1 Missense_Mutation p.R15W 0.33 deleterious_low_confidence(0) unknown(0) TCGA-HU-8602-01 13 36909271 36909272 - A SPG20 Frame_Shift_Ins p.V233Cfs*8 0.21 TCGA-HU-8602-01 13 37606025 37606025 T C SUPT20H Missense_Mutation p.K239E 0.23 deleterious(0) probably_damaging(0.926) TCGA-HU-8602-01 13 43900656 43900656 G A ENOX1 Nonsense_Mutation p.Q348* 0.28 TCGA-HU-8602-01 13 49918346 49918346 A G CAB39L Missense_Mutation p.V198A 0.19 tolerated(0.17) benign(0.023) TCGA-HU-8602-01 13 52726773 52726773 G A NEK3 Missense_Mutation p.R122C 0.23 deleterious(0) probably_damaging(0.982) TCGA-HU-8602-01 13 52952397 52952397 C T THSD1 Missense_Mutation p.A570T 0.21 tolerated(0.43) benign(0.004) TCGA-HU-8602-01 13 52976798 52976798 T - THSD1 5'UTR 0.33 TCGA-HU-8602-01 13 53617325 53617325 T C OLFM4 Missense_Mutation p.L219P 0.25 deleterious(0) probably_damaging(0.992) TCGA-HU-8602-01 13 58208476 58208476 G A PCDH17 Missense_Mutation p.R599H 0.30 deleterious(0) probably_damaging(0.998) TCGA-HU-8602-01 13 77592810 77592810 C T FBXL3 Silent p.S132S 0.10 TCGA-HU-8602-01 13 77625209 77625209 T C MYCBP2 Missense_Mutation p.H4577R 0.19 probably_damaging(0.942) TCGA-HU-8602-01 13 77632536 77632536 G A MYCBP2 Silent p.Y4344Y 0.26 TCGA-HU-8602-01 13 84453490 84453490 G A SLITRK1 3'UTR 0.17 TCGA-HU-8602-01 13 84455408 84455408 C T SLITRK1 Missense_Mutation p.A79T 0.24 deleterious(0.02) possibly_damaging(0.707) TCGA-HU-8602-01 13 88330378 88330378 G A SLITRK5 Missense_Mutation p.R912Q 0.23 tolerated(0.49) benign(0.037) TCGA-HU-8602-01 14 100795815 100795815 C T SLC25A47 Missense_Mutation p.R254C 0.20 tolerated(0.05) probably_damaging(0.977) TCGA-HU-8602-01 14 100996336 100996336 C T WDR25 Silent p.L531L 0.31 TCGA-HU-8602-01 14 101004698 101004698 C T BEGAIN Missense_Mutation p.A464T 0.21 tolerated(0.66) benign(0.056) TCGA-HU-8602-01 14 101198519 101198519 G A DLK1 Missense_Mutation p.G135S 0.19 tolerated(0.14) probably_damaging(1) TCGA-HU-8602-01 14 102675066 102675067 - C WDR20 Frame_Shift_Ins p.H220Pfs*27 0.20 TCGA-HU-8602-01 14 103148247 103148247 G A RCOR1 Missense_Mutation p.R126H 0.41 tolerated(0.38) possibly_damaging(0.459) TCGA-HU-8602-01 14 105174185 105174185 C - INF2 Frame_Shift_Del p.V530Wfs*28 0.39 TCGA-HU-8602-01 14 105406225 105406225 C T AHNAK2 Missense_Mutation p.S5188N 0.24 benign(0.33) TCGA-HU-8602-01 14 105688094 105688094 G A BRF1 Silent p.G402G 0.25 TCGA-HU-8602-01 14 20915788 20915788 A - OSGEP Frame_Shift_Del p.F285Lfs*14 0.19 TCGA-HU-8602-01 14 21058397 21058397 C T RNASE12 3'UTR 0.15 TCGA-HU-8602-01 14 21557002 21557002 C T ARHGEF40 Missense_Mutation p.A1511V 0.14 deleterious_low_confidence(0.01) benign(0.345) TCGA-HU-8602-01 14 22236791 22236791 G A TRAV6 Missense_Mutation p.R19Q 0.26 tolerated_low_confidence(0.63) benign(0.144) TCGA-HU-8602-01 14 22772370 22772370 G A TRAV39 Missense_Mutation p.R88H 0.17 tolerated(0.11) possibly_damaging(0.738) TCGA-HU-8602-01 14 23548926 23548926 T C ACIN1 Missense_Mutation p.S598G 0.29 benign(0.13) TCGA-HU-8602-01 14 23818484 23818484 T C SLC22A17 Missense_Mutation p.M175V 0.15 tolerated(0.4) benign(0.038) TCGA-HU-8602-01 14 23858084 23858084 C A MYH6 Nonsense_Mutation p.E1387* 0.28 TCGA-HU-8602-01 14 24529859 24529859 G A LRRC16B Missense_Mutation p.R695Q 0.16 deleterious(0.01) possibly_damaging(0.666) TCGA-HU-8602-01 14 24546502 24546502 G A CPNE6 Missense_Mutation p.R480Q 0.15 tolerated(0.49) benign(0.357) TCGA-HU-8602-01 14 24659680 24659680 A G TM9SF1 Missense_Mutation p.C445R 0.23 deleterious(0) probably_damaging(0.994) TCGA-HU-8602-01 14 31614149 31614149 T C HECTD1 Splice_Site p.X833_splice 0.11 TCGA-HU-8602-01 14 35032302 35032302 T - SNX6 3'UTR 0.12 TCGA-HU-8602-01 14 36302297 36302297 G A BRMS1L Missense_Mutation p.R116H 0.38 deleterious(0.05) possibly_damaging(0.845) TCGA-HU-8602-01 14 39650339 39650344 CCTCAG - PNN In_Frame_Del p.P478_Q479del 0.19 TCGA-HU-8602-01 14 45414495 45414495 G A KLHL28 Missense_Mutation p.R213C 0.17 deleterious(0) probably_damaging(1) TCGA-HU-8602-01 14 45432122 45432122 G - FAM179B Frame_Shift_Del p.E168Rfs*11 0.14 TCGA-HU-8602-01 14 45432458 45432458 C T FAM179B Silent p.S278S 0.21 TCGA-HU-8602-01 14 45642325 45642325 C A FANCM Missense_Mutation p.P743H 0.32 deleterious(0) probably_damaging(0.95) TCGA-HU-8602-01 14 50597471 50597471 A T SOS2 Missense_Mutation p.S1029T 0.29 tolerated(0.44) benign(0) TCGA-HU-8602-01 14 53331480 53331480 C T FERMT2 Nonsense_Mutation p.W455* 0.25 TCGA-HU-8602-01 14 53513449 53513480 AAATCAGTTTTAGGCCATTCATGTCCTTCAAG TCAGTTTTAGGCCATTCATGTCCTTCA DDHD1 3'UTR 0.12 TCGA-HU-8602-01 14 57949848 57949848 G A C14orf105 Missense_Mutation p.P110S 0.28 deleterious(0.03) probably_damaging(1) TCGA-HU-8602-01 14 62567321 62567321 C A SYT16 Missense_Mutation p.L612M 0.38 tolerated(0.4) benign(0.21) TCGA-HU-8602-01 14 63851209 63851209 G A PPP2R5E Silent p.P385P 0.20 TCGA-HU-8602-01 14 64896929 64896929 A G MTHFD1 Missense_Mutation p.Q431R 0.25 deleterious(0) probably_damaging(0.998) TCGA-HU-8602-01 14 68113365 68113365 C A ARG2 Missense_Mutation p.P176Q 0.12 deleterious(0.03) probably_damaging(0.927) TCGA-HU-8602-01 14 74180118 74180118 G A PNMA1 Silent p.A75A 0.25 TCGA-HU-8602-01 14 74424821 74424821 T - ENTPD5 3'Flank 0.31 TCGA-HU-8602-01 14 75019032 75019032 G A LTBP2 Silent p.P419P 0.19 TCGA-HU-8602-01 14 77873148 77873148 C T NOXRED1 Missense_Mutation p.V201I 0.20 tolerated(1) benign(0) TCGA-HU-8602-01 14 77917640 77917640 C T VIPAS39 Missense_Mutation p.S78N 0.04 tolerated(0.41) benign(0.007) TCGA-HU-8602-01 14 78174225 78174225 T G ALKBH1 Missense_Mutation p.E41D 0.28 tolerated(0.55) benign(0.032) TCGA-HU-8602-01 14 78235955 78235956 - C C14orf178 Frame_Shift_Ins p.H103Pfs*4 0.23 TCGA-HU-8602-01 14 78325507 78325507 T C ADCK1 Missense_Mutation p.L103P 0.19 deleterious(0) probably_damaging(0.998) TCGA-HU-8602-01 14 79433614 79433614 C - NRXN3 Frame_Shift_Del p.L576* 0.13 TCGA-HU-8602-01 14 86088697 86088697 G A FLRT2 Missense_Mutation p.R280Q 0.05 deleterious(0) possibly_damaging(0.731) TCGA-HU-8602-01 14 88652342 88652342 C T KCNK10 Missense_Mutation p.R390Q 0.24 deleterious(0.03) possibly_damaging(0.787) TCGA-HU-8602-01 14 89343847 89343847 G A TTC8 3'UTR 0.33 TCGA-HU-8602-01 14 90870757 90870757 G A CALM1 Missense_Mutation p.R107H 0.22 tolerated_low_confidence(0.07) benign(0.11) TCGA-HU-8602-01 14 91338514 91338514 G A RPS6KA5 Silent p.H771H 0.27 TCGA-HU-8602-01 14 93275769 93275769 C A GOLGA5 Silent p.S299S 0.16 TCGA-HU-8602-01 14 93712224 93712224 T C BTBD7 Missense_Mutation p.T844A 0.15 tolerated_low_confidence(1) benign(0) TCGA-HU-8602-01 14 94007031 94007031 G A UNC79 Missense_Mutation p.A283T 0.20 tolerated(0.28) probably_damaging(0.998) TCGA-HU-8602-01 14 99642456 99642456 G A BCL11B Silent p.H239H 0.17 TCGA-HU-8602-01 15 100332821 100332821 T C AC090825.1 3'Flank 0.18 TCGA-HU-8602-01 15 101434257 101434257 C T ALDH1A3 Silent p.T212T 0.22 TCGA-HU-8602-01 15 22382805 22382805 G T OR4N4 Missense_Mutation p.E111D 0.12 tolerated(0.09) probably_damaging(0.997) TCGA-HU-8602-01 15 22709989 22709989 C G AC116165.1 5'Flank 0.36 TCGA-HU-8602-01 15 22956281 22956281 G A CYFIP1 Intron 0.15 TCGA-HU-8602-01 15 22956318 22956318 C A CYFIP1 Intron 0.15 TCGA-HU-8602-01 15 23932203 23932203 G A NDN Silent p.A54A 0.28 TCGA-HU-8602-01 15 25299406 25299406 A G SNORD116-2 RNA 0.17 TCGA-HU-8602-01 15 25474048 25474048 A G SNORD115-33 5'Flank 0.24 TCGA-HU-8602-01 15 28420752 28420752 C T HERC2 Missense_Mutation p.R3246Q 0.29 probably_damaging(0.917) TCGA-HU-8602-01 15 28518100 28518100 T C HERC2 Missense_Mutation p.Q284R 0.24 benign(0.258) TCGA-HU-8602-01 15 29385352 29385352 C T APBA2 Silent p.L382L 0.27 TCGA-HU-8602-01 15 31362183 31362183 G A TRPM1 Intron 0.26 TCGA-HU-8602-01 15 31818590 31818590 C T OTUD7A Silent p.P278P 0.47 TCGA-HU-8602-01 15 33954617 33954617 A G RYR3 Missense_Mutation p.Y1629C 0.13 possibly_damaging(0.642) TCGA-HU-8602-01 15 34042195 34042195 G A RYR3 Missense_Mutation p.V2739M 0.18 benign(0.041) TCGA-HU-8602-01 15 34355445 34355445 G A CHRM5 Missense_Mutation p.R176Q 0.24 deleterious(0.02) probably_damaging(0.997) TCGA-HU-8602-01 15 40034091 40034091 A G FSIP1 Silent p.H190H 0.19 TCGA-HU-8602-01 15 40282508 40282508 T - EIF2AK4 Frame_Shift_Del p.L856Wfs*7 0.20 TCGA-HU-8602-01 15 40750842 40750842 G A BAHD1 Missense_Mutation p.R60H 0.28 deleterious(0) probably_damaging(0.992) TCGA-HU-8602-01 15 41860557 41860557 C A TYRO3 Silent p.T368T 0.21 TCGA-HU-8602-01 15 42019391 42019392 AG - MGA Frame_Shift_Del p.E1149Afs*2 0.24 TCGA-HU-8602-01 15 42067468 42067468 G A MAPKBP1 5'UTR 0.19 TCGA-HU-8602-01 15 42139947 42139947 C T PLA2G4B Silent p.D976D 0.25 TCGA-HU-8602-01 15 43026452 43026452 C T CDAN1 Missense_Mutation p.R410Q 0.23 tolerated(0.56) probably_damaging(0.975) TCGA-HU-8602-01 15 43527731 43527731 G A TGM5 Silent p.H550H 0.16 TCGA-HU-8602-01 15 43653444 43653445 CA - ZSCAN29 Frame_Shift_Del p.C795Wfs*6 0.14 TCGA-HU-8602-01 15 43873572 43873572 C T PPIP5K1 Silent p.G264G 0.11 TCGA-HU-8602-01 15 43931885 43931885 G A CATSPER2 Missense_Mutation p.R225C 0.28 deleterious(0) probably_damaging(0.932) TCGA-HU-8602-01 15 43932533 43932533 C T CATSPER2 Missense_Mutation p.V184I 0.21 tolerated(0.13) benign(0.308) TCGA-HU-8602-01 15 48433511 48433511 C T MYEF2 3'UTR 0.27 TCGA-HU-8602-01 15 48760294 48760294 G A FBN1 Missense_Mutation p.R1530C 0.24 benign(0.132) TCGA-HU-8602-01 15 49284489 49284489 C T SECISBP2L Silent p.S1086S 0.16 TCGA-HU-8602-01 15 50264869 50264869 G T ATP8B4 Missense_Mutation p.Q385K 0.27 deleterious(0) probably_damaging(0.977) TCGA-HU-8602-01 15 50264870 50264870 C T ATP8B4 Silent p.G384G 0.23 TCGA-HU-8602-01 15 52903829 52903829 G A FAM214A Missense_Mutation p.A116V 0.18 tolerated(0.36) benign(0.048) TCGA-HU-8602-01 15 55664165 55664165 G A CCPG1 Missense_Mutation p.R178C 0.21 deleterious(0) probably_damaging(1) TCGA-HU-8602-01 15 57565390 57565390 A C TCF12 Missense_Mutation p.K636N 0.27 deleterious(0) probably_damaging(0.922) TCGA-HU-8602-01 15 57730401 57730401 G A CGNL1 Silent p.S68S 0.27 TCGA-HU-8602-01 15 59063818 59063818 T C FAM63B Missense_Mutation p.V75A 0.13 tolerated_low_confidence(0.42) benign(0) TCGA-HU-8602-01 15 59181683 59181683 C T SLTM Missense_Mutation p.R717H 0.25 deleterious(0) unknown(0) TCGA-HU-8602-01 15 60792113 60792113 C T RORA Missense_Mutation p.R495Q 0.17 tolerated(0.26) benign(0.128) TCGA-HU-8602-01 15 62274697 62274697 A C VPS13C Missense_Mutation p.L664V 0.15 deleterious(0) probably_damaging(0.995) TCGA-HU-8602-01 15 62539253 62539253 G A AC126323.1 5'Flank 0.16 TCGA-HU-8602-01 15 63073397 63073397 T C TLN2 Missense_Mutation p.V1858A 0.31 tolerated(0.07) benign(0.004) TCGA-HU-8602-01 15 63922683 63922683 C - HERC1 Frame_Shift_Del p.S4317Afs*9 0.20 TCGA-HU-8602-01 15 64411006 64411006 A G SNX1 Missense_Mutation p.E140G 0.19 tolerated(0.44) benign(0.094) TCGA-HU-8602-01 15 64449114 64449114 A - PPIB Intron 0.22 TCGA-HU-8602-01 15 71403497 71403497 C T CT62 Missense_Mutation p.R135K 0.31 deleterious_low_confidence(0) unknown(0) TCGA-HU-8602-01 15 73852106 73852106 C T C15orf60 Missense_Mutation p.S217L 0.23 deleterious(0.03) possibly_damaging(0.861) TCGA-HU-8602-01 15 73889393 73889393 G A NPTN Nonsense_Mutation p.R137* 0.23 TCGA-HU-8602-01 15 74181443 74181443 G T TBC1D21 3'UTR 0.17 TCGA-HU-8602-01 15 74290799 74290799 G A PML Missense_Mutation p.R195H 0.14 tolerated(0.1) benign(0.081) TCGA-HU-8602-01 15 74315437 74315437 C T PML Missense_Mutation p.R291W 0.14 deleterious(0.02) possibly_damaging(0.67) TCGA-HU-8602-01 15 74425314 74425314 C T ISLR2 Silent p.D73D 0.20 TCGA-HU-8602-01 15 75676745 75676745 G A SIN3A Nonsense_Mutation p.Q1019* 0.22 TCGA-HU-8602-01 15 77906695 77906695 C T LINGO1 Silent p.S518S 0.21 TCGA-HU-8602-01 15 77907658 77907658 C T LINGO1 Silent p.T197T 0.29 TCGA-HU-8602-01 15 78317749 78317749 T - TBC1D2B Frame_Shift_Del p.N313Ifs*42 0.16 TCGA-HU-8602-01 15 78777250 78777250 A G IREB2 Missense_Mutation p.M521V 0.22 deleterious(0) possibly_damaging(0.878) TCGA-HU-8602-01 15 78790472 78790472 G A IREB2 Missense_Mutation p.R960Q 0.16 deleterious(0) possibly_damaging(0.787) TCGA-HU-8602-01 15 78888892 78888894 CCT - CHRNA3 3'UTR 0.27 TCGA-HU-8602-01 15 79215386 79215386 A G CTSH Missense_Mutation p.I294T 0.20 tolerated(0.71) benign(0.003) TCGA-HU-8602-01 15 79339155 79339155 G A RASGRF1 Missense_Mutation p.R271W 0.33 deleterious(0) probably_damaging(0.97) TCGA-HU-8602-01 15 81241173 81241173 C T KIAA1199 Missense_Mutation p.R1332W 0.26 tolerated(0.21) possibly_damaging(0.816) TCGA-HU-8602-01 15 81585075 81585075 G A IL16 Silent p.P533P 0.34 TCGA-HU-8602-01 15 81585364 81585364 C A IL16 Missense_Mutation p.P630T 0.13 deleterious(0.02) benign(0.146) TCGA-HU-8602-01 15 83499704 83499704 C A WHAMM Silent p.S665S 0.26 TCGA-HU-8602-01 15 83523521 83523521 G A HOMER2 Silent p.L187L 0.27 TCGA-HU-8602-01 15 84506931 84506931 C T ADAMTSL3 Missense_Mutation p.R231W 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-HU-8602-01 15 89391193 89391193 C T ACAN Silent p.S552S 0.21 TCGA-HU-8602-01 15 91310208 91310208 A - BLM Frame_Shift_Del p.D757Tfs*4 0.24 TCGA-HU-8602-01 15 91428691 91428691 G A FES Missense_Mutation p.R88Q 0.17 deleterious(0.03) probably_damaging(0.984) TCGA-HU-8602-01 15 93540529 93540530 - G CHD2 Frame_Shift_Ins p.V1263Gfs*4 0.19 TCGA-HU-8602-01 15 99023974 99023975 - A FAM169B Frame_Shift_Ins p.I14Hfs*16 0.20 TCGA-HU-8602-01 16 11778032 11778032 A - TXNDC11 Frame_Shift_Del p.C743Afs*6 0.10 TCGA-HU-8602-01 16 14738200 14738200 A G BFAR 5'UTR 0.18 TCGA-HU-8602-01 16 14947412 14947412 A G NOMO1 Missense_Mutation p.E275G 0.17 deleterious(0.04) benign(0.079) TCGA-HU-8602-01 16 15977964 15977964 G A FOPNL Nonsense_Mutation p.R43* 0.21 TCGA-HU-8602-01 16 16205288 16205288 C A ABCC1 Missense_Mutation p.F976L 0.24 tolerated(1) benign(0.029) TCGA-HU-8602-01 16 1818599 1818599 C T MAPK8IP3 Silent p.G1287G 0.33 TCGA-HU-8602-01 16 1869196 1869196 G A HAGH Missense_Mutation p.A154V 0.23 tolerated(0.24) benign(0.123) TCGA-HU-8602-01 16 19883588 19883588 C T GPRC5B Missense_Mutation p.A194T 0.06 tolerated(0.53) possibly_damaging(0.461) TCGA-HU-8602-01 16 21709120 21709120 C T OTOA Missense_Mutation p.A255V 0.21 deleterious(0) probably_damaging(0.937) TCGA-HU-8602-01 16 21858828 21858828 C T NPIPB4 Missense_Mutation p.G52E 0.15 probably_damaging(0.99) TCGA-HU-8602-01 16 22000062 22000062 G A PDZD9 Nonsense_Mutation p.R28* 0.21 TCGA-HU-8602-01 16 22262606 22262606 G - EEF2K Frame_Shift_Del p.E196Rfs*22 0.23 TCGA-HU-8602-01 16 2258659 2258659 G A MLST8 Intron 0.24 TCGA-HU-8602-01 16 22926592 22926592 C T HS3ST2 Silent p.F271F 0.27 TCGA-HU-8602-01 16 23102071 23102071 C T USP31 Missense_Mutation p.R430K 0.23 tolerated(0.08) benign(0.401) TCGA-HU-8602-01 16 24580275 24580275 G A RBBP6 Missense_Mutation p.R755Q 0.20 deleterious_low_confidence(0) unknown(0) TCGA-HU-8602-01 16 27374719 27374719 G - IL4R Frame_Shift_Del p.E684Kfs*3 0.15 TCGA-HU-8602-01 16 27481681 27481681 G A GTF3C1 Missense_Mutation p.T1521M 0.18 deleterious(0) possibly_damaging(0.724) TCGA-HU-8602-01 16 27503681 27503681 G A GTF3C1 Silent p.C1043C 0.21 TCGA-HU-8602-01 16 2813625 2813626 - CT SRRM2 Frame_Shift_Ins p.C1036Sfs*5 0.23 TCGA-HU-8602-01 16 2815810 2815810 C T SRRM2 Missense_Mutation p.R1761C 0.17 unknown(0) TCGA-HU-8602-01 16 28846877 28846877 C T ATXN2L Missense_Mutation p.A898V 0.28 deleterious(0.04) benign(0.358) TCGA-HU-8602-01 16 29816226 29816226 A - KIF22 Frame_Shift_Del p.I592Yfs*5 0.18 TCGA-HU-8602-01 16 29884572 29884572 G - SEZ6L2 Frame_Shift_Del p.P826Hfs*5 0.27 TCGA-HU-8602-01 16 30037004 30037004 T C FAM57B Intron 0.32 TCGA-HU-8602-01 16 30078939 30078940 - C ALDOA Frame_Shift_Ins p.Q150Pfs*38 0.20 TCGA-HU-8602-01 16 30768336 30768336 G T PHKG2 Missense_Mutation p.G380V 0.14 tolerated(0.12) benign(0.001) TCGA-HU-8602-01 16 30995289 30995291 ACA - SETD1A In_Frame_Del p.N1691del 0.30 TCGA-HU-8602-01 16 31098131 31098131 C - RP11-196G11.1 3'Flank 0.26 TCGA-HU-8602-01 16 31288261 31288261 T G ITGAM Silent p.T368T 0.17 TCGA-HU-8602-01 16 3781927 3781927 G A CREBBP Silent p.G1580G 0.22 TCGA-HU-8602-01 16 4164580 4164580 G A ADCY9 Silent p.H288H 0.18 TCGA-HU-8602-01 16 4311899 4311899 C T TFAP4 Missense_Mutation p.G136S 0.36 deleterious(0) probably_damaging(0.974) TCGA-HU-8602-01 16 4563767 4563767 C T CDIP1 Silent p.P57P 0.25 TCGA-HU-8602-01 16 46991017 46991017 C T DNAJA2 Missense_Mutation p.R388H 0.27 deleterious(0.03) possibly_damaging(0.84) TCGA-HU-8602-01 16 48149395 48149395 G A ABCC12 Silent p.H640H 0.28 TCGA-HU-8602-01 16 48180286 48180286 C T ABCC12 Missense_Mutation p.R17Q 0.21 tolerated(0.81) benign(0.002) TCGA-HU-8602-01 16 48395676 48395676 C T LONP2 3'Flank 0.20 TCGA-HU-8602-01 16 49430514 49430514 G T C16orf78 Missense_Mutation p.S192I 0.27 deleterious(0) benign(0.128) TCGA-HU-8602-01 16 49672706 49672706 G A ZNF423 Silent p.I119I 0.31 TCGA-HU-8602-01 16 5038280 5038280 C T SEC14L5 Missense_Mutation p.T115M 0.27 tolerated(0.2) probably_damaging(0.956) TCGA-HU-8602-01 16 50707432 50707432 G A SNX20 Missense_Mutation p.A279V 0.11 tolerated(0.25) benign(0.002) TCGA-HU-8602-01 16 50707935 50707935 G A SNX20 Silent p.A111A 0.25 TCGA-HU-8602-01 16 55362962 55362962 G A IRX6 Missense_Mutation p.A358T 0.16 deleterious(0) possibly_damaging(0.558) TCGA-HU-8602-01 16 56685818 56685818 T C MT1B 5'UTR 0.19 TCGA-HU-8602-01 16 56718063 56718063 T - MT1X 3'UTR 0.24 TCGA-HU-8602-01 16 57060196 57060196 C - NLRC5 Frame_Shift_Del p.P449Lfs*17 0.18 TCGA-HU-8602-01 16 57238591 57238591 C T RSPRY1 Silent p.A7A 0.22 TCGA-HU-8602-01 16 57493505 57493505 T C COQ9 Missense_Mutation p.L247P 0.21 deleterious(0) probably_damaging(0.998) TCGA-HU-8602-01 16 57752348 57752348 C T CCDC135 Silent p.D389D 0.16 TCGA-HU-8602-01 16 58031734 58031734 A G ZNF319 Missense_Mutation p.S146P 0.25 deleterious(0.04) benign(0.07) TCGA-HU-8602-01 16 58589340 58589340 A - CNOT1 Frame_Shift_Del p.Q904Sfs*9 0.13 TCGA-HU-8602-01 16 633473 633473 C - PIGQ Frame_Shift_Del p.S710Vfs*6 0.23 TCGA-HU-8602-01 16 64981400 64981400 T A CDH11 3'UTR 0.29 TCGA-HU-8602-01 16 66600756 66600756 G A CMTM1 Missense_Mutation p.V114M 0.33 deleterious(0) benign(0.272) TCGA-HU-8602-01 16 67034813 67034813 C T CES4A Silent p.Y152Y 0.19 TCGA-HU-8602-01 16 67035233 67035233 G T CES4A Missense_Mutation p.G187W 0.27 deleterious(0) probably_damaging(1) TCGA-HU-8602-01 16 67214469 67214469 G - KIAA0895L Frame_Shift_Del p.S16Afs*13 0.19 TCGA-HU-8602-01 16 67241525 67241525 G T LRRC29 Missense_Mutation p.L219M 0.20 deleterious(0) probably_damaging(0.999) TCGA-HU-8602-01 16 67323584 67323584 A C KCTD19 Missense_Mutation p.L890R 0.21 tolerated(0.18) benign(0.126) TCGA-HU-8602-01 16 67688258 67688258 C T RLTPR Missense_Mutation p.A1082V 0.30 tolerated(0.26) benign(0.015) TCGA-HU-8602-01 16 677598 677598 G A RAB40C Silent p.S274S 0.30 TCGA-HU-8602-01 16 67768880 67768880 C T RANBP10 Silent p.Q219Q 0.20 TCGA-HU-8602-01 16 67865026 67865026 G A CENPT Intron 0.34 TCGA-HU-8602-01 16 67918831 67918831 T C NRN1L Missense_Mutation p.C9R 0.23 deleterious_low_confidence(0.01) unknown(0) TCGA-HU-8602-01 16 68026858 68026858 C A DPEP2 Silent p.V86V 0.28 TCGA-HU-8602-01 16 68732248 68732248 G - CDH3 Frame_Shift_Del p.G813Afs*44 0.22 TCGA-HU-8602-01 16 69391422 69391422 T C TERF2 Missense_Mutation p.Q448R 0.21 deleterious(0.01) benign(0.294) TCGA-HU-8602-01 16 69965738 69965738 C T WWP2 Missense_Mutation p.R543W 0.17 deleterious(0) probably_damaging(0.999) TCGA-HU-8602-01 16 70293086 70293086 G T AARS Silent p.R597R 0.28 TCGA-HU-8602-01 16 70398964 70398964 A - DDX19A Frame_Shift_Del p.V180* 0.17 TCGA-HU-8602-01 16 70941283 70941283 T C HYDIN Silent p.S2836S 0.21 TCGA-HU-8602-01 16 71674501 71674501 C T MARVELD3 Silent p.Y268Y 0.18 TCGA-HU-8602-01 16 72821094 72821094 G A ZFHX3 Missense_Mutation p.T3694I 0.23 unknown(0) TCGA-HU-8602-01 16 72830903 72830904 CT - ZFHX3 Frame_Shift_Del p.R1893Gfs*35 0.25 TCGA-HU-8602-01 16 733220 733220 C - JMJD8 Frame_Shift_Del p.V197Cfs*13 0.16 TCGA-HU-8602-01 16 735450 735450 G T WDR24 Missense_Mutation p.P609H 0.26 tolerated(0.28) probably_damaging(0.929) TCGA-HU-8602-01 16 77396098 77396109 CAGACTGCCATT - ADAMTS18 In_Frame_Del p.Q370_A374delinsP 0.26 TCGA-HU-8602-01 16 81075980 81075980 A G ATMIN Missense_Mutation p.D186G 0.24 deleterious(0.02) possibly_damaging(0.809) TCGA-HU-8602-01 16 81735407 81735407 T C CMIP Splice_Site p.X632_splice 0.22 TCGA-HU-8602-01 16 84690621 84690621 T C KLHL36 Missense_Mutation p.Y70H 0.26 deleterious(0) probably_damaging(1) TCGA-HU-8602-01 16 87451111 87451111 A G ZCCHC14 Silent p.R309R 0.27 TCGA-HU-8602-01 16 88744893 88744893 G A SNAI3 Missense_Mutation p.A281V 0.25 tolerated(1) possibly_damaging(0.474) TCGA-HU-8602-01 16 88873791 88873791 G A CDT1 Missense_Mutation p.V460M 0.24 deleterious(0) benign(0.32) TCGA-HU-8602-01 16 9014266 9014266 G A USP7 Silent p.D187D 0.27 TCGA-HU-8602-01 17 1028809 1028809 C T ABR Intron 0.31 TCGA-HU-8602-01 17 10549160 10549160 G A MYH3 Silent p.S335S 0.24 TCGA-HU-8602-01 17 11827202 11827202 G A DNAH9 Missense_Mutation p.V3941M 0.28 probably_damaging(0.973) TCGA-HU-8602-01 17 11872870 11872870 A T DNAH9 3'UTR 0.20 TCGA-HU-8602-01 17 1538704 1538704 C T SCARF1 Missense_Mutation p.R614Q 0.19 deleterious(0.01) probably_damaging(0.956) TCGA-HU-8602-01 17 1543228 1543228 T C SCARF1 Missense_Mutation p.S373G 0.26 tolerated(0.16) benign(0.007) TCGA-HU-8602-01 17 15441316 15441317 AA - TVP23C Intron 0.16 TCGA-HU-8602-01 17 17046886 17046886 C - MPRIP Frame_Shift_Del p.P353Qfs*30 0.24 TCGA-HU-8602-01 17 17700893 17700893 G A RAI1 Missense_Mutation p.R1544Q 0.26 deleterious(0.01) benign(0.032) TCGA-HU-8602-01 17 17707165 17707165 T C RAI1 Splice_Site p.X1887_splice 0.23 TCGA-HU-8602-01 17 1798335 1798335 T C RPA1 Silent p.N564N 0.23 TCGA-HU-8602-01 17 1944878 1944878 G A DPH1 Missense_Mutation p.R402H 0.12 tolerated(0.08) benign(0.437) TCGA-HU-8602-01 17 20135668 20135668 G - SPECC1 Frame_Shift_Del p.D769Mfs*81 0.32 TCGA-HU-8602-01 17 20149335 20149335 G A SPECC1 Silent p.S816S 0.25 TCGA-HU-8602-01 17 21825535 21825535 C T FAM27L RNA 0.13 TCGA-HU-8602-01 17 2265420 2265420 G A SGSM2 Missense_Mutation p.S105N 0.24 tolerated(0.51) benign(0.002) TCGA-HU-8602-01 17 2310316 2310316 T A AC006435.1 Silent p.P152P 0.11 TCGA-HU-8602-01 17 2583573 2583573 T C PAFAH1B1 Missense_Mutation p.M373T 0.28 tolerated(0.24) benign(0.001) TCGA-HU-8602-01 17 26653775 26653775 C T TMEM97 Missense_Mutation p.R163W 0.18 tolerated(0.19) probably_damaging(1) TCGA-HU-8602-01 17 26696686 26696686 G A VTN Missense_Mutation p.A124V 0.28 tolerated(0.34) benign(0.001) TCGA-HU-8602-01 17 26864250 26864250 C - FOXN1 Frame_Shift_Del p.P583Lfs*5 0.22 TCGA-HU-8602-01 17 26875065 26875065 C T UNC119 Missense_Mutation p.R130H 0.24 deleterious(0.02) probably_damaging(0.937) TCGA-HU-8602-01 17 27448659 27448659 C T MYO18A Missense_Mutation p.R426H 0.27 tolerated(0.07) probably_damaging(0.988) TCGA-HU-8602-01 17 27898873 27898873 A G TP53I13 Splice_Site p.X105_splice 0.22 TCGA-HU-8602-01 17 28712232 28712232 C T CPD Silent p.G324G 0.12 TCGA-HU-8602-01 17 30192396 30192396 G A UTP6 Missense_Mutation p.S542F 0.26 deleterious(0) benign(0.013) TCGA-HU-8602-01 17 33513405 33513405 C A UNC45B Missense_Mutation p.L875I 0.26 tolerated(0.09) benign(0.061) TCGA-HU-8602-01 17 33520761 33520761 G C SLC35G3 Missense_Mutation p.T189S 0.19 tolerated(0.29) possibly_damaging(0.58) TCGA-HU-8602-01 17 33689952 33689952 G A SLFN11 Missense_Mutation p.P292L 0.23 tolerated(0.13) benign(0.002) TCGA-HU-8602-01 17 34106047 34106048 - T MMP28 Frame_Shift_Ins p.S75Kfs*30 0.24 TCGA-HU-8602-01 17 3417181 3417181 G A TRPV3 3'UTR 0.08 TCGA-HU-8602-01 17 34893363 34893363 C T PIGW Missense_Mutation p.A138V 0.21 tolerated(1) benign(0.001) TCGA-HU-8602-01 17 34942390 34942390 A G GGNBP2 Missense_Mutation p.E496G 0.24 deleterious(0.04) benign(0.014) TCGA-HU-8602-01 17 37761804 37761804 C T NEUROD2 Missense_Mutation p.R350H 0.13 deleterious(0) probably_damaging(0.996) TCGA-HU-8602-01 17 3819462 3819462 G - P2RX1 Frame_Shift_Del p.R20Afs*16 0.18 TCGA-HU-8602-01 17 3854680 3854680 G A ATP2A3 Missense_Mutation p.R110C 0.18 deleterious(0) possibly_damaging(0.853) TCGA-HU-8602-01 17 39506948 39506948 G - KRT33A Frame_Shift_Del p.S25Afs*17 0.20 TCGA-HU-8602-01 17 39520040 39520040 C T KRT33B 3'UTR 0.21 TCGA-HU-8602-01 17 39594763 39594763 G A KRT38 Missense_Mutation p.R334C 0.28 deleterious(0.02) probably_damaging(0.91) TCGA-HU-8602-01 17 39623442 39623442 A G KRT32 Missense_Mutation p.C46R 0.24 tolerated(0.05) benign(0.001) TCGA-HU-8602-01 17 39643875 39643875 G T KRT36 Missense_Mutation p.L272M 0.06 tolerated(0.58) probably_damaging(0.999) TCGA-HU-8602-01 17 3992073 3992073 C T ZZEF1 Missense_Mutation p.V714I 0.19 tolerated(0.61) benign(0) TCGA-HU-8602-01 17 3992159 3992159 C T ZZEF1 Missense_Mutation p.R685H 0.18 deleterious(0) probably_damaging(0.999) TCGA-HU-8602-01 17 40660596 40660596 G A ATP6V0A1 Intron 0.31 TCGA-HU-8602-01 17 40845418 40845418 T C CNTNAP1 Silent p.G952G 0.24 TCGA-HU-8602-01 17 40948206 40948206 G A WNK4 Missense_Mutation p.R1166Q 0.22 tolerated(0.06) probably_damaging(0.994) TCGA-HU-8602-01 17 41297038 41297038 G A NBR2 3'Flank 0.30 TCGA-HU-8602-01 17 41570258 41570258 G A DHX8 Missense_Mutation p.R238Q 0.16 tolerated(0.14) benign(0.003) TCGA-HU-8602-01 17 42018946 42018946 C T PPY Missense_Mutation p.G26D 0.30 tolerated(0.12) unknown(0) TCGA-HU-8602-01 17 42512489 42512489 G A GPATCH8 Missense_Mutation p.R98C 0.12 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-HU-8602-01 17 43311489 43311489 A G FMNL1 Missense_Mutation p.K179R 0.31 tolerated(0.13) unknown(0) TCGA-HU-8602-01 17 43552823 43552823 G A PLEKHM1 Missense_Mutation p.T189M 0.34 deleterious(0) probably_damaging(0.999) TCGA-HU-8602-01 17 44049230 44049230 C T MAPT Missense_Mutation p.P47S 0.15 tolerated(0.1) benign(0.066) TCGA-HU-8602-01 17 44101483 44101483 G A MAPT Silent p.Q759Q 0.18 TCGA-HU-8602-01 17 44625998 44625998 A C LRRC37A2 Missense_Mutation p.K1165Q 0.12 deleterious(0.03) benign(0.047) TCGA-HU-8602-01 17 45421629 45421629 A G EFCAB13 Silent p.S135S 0.22 TCGA-HU-8602-01 17 45507397 45507397 G T EFCAB13 Intron 0.23 TCGA-HU-8602-01 17 45567563 45567563 G A MRPL45P2 RNA 0.17 TCGA-HU-8602-01 17 45788076 45788076 G - TBKBP1 3'UTR 0.14 TCGA-HU-8602-01 17 45904455 45904455 C T MRPL10 Missense_Mutation p.R123Q 0.29 deleterious(0.03) benign(0.229) TCGA-HU-8602-01 17 46257474 46257474 C A SKAP1 Silent p.V256V 0.15 TCGA-HU-8602-01 17 47778809 47778810 TC - SLC35B1 3'UTR 0.29 TCGA-HU-8602-01 17 47918915 47918915 T - TAC4 Frame_Shift_Del p.A84Hfs*101 0.19 TCGA-HU-8602-01 17 4796056 4796056 C T MINK1 Silent p.R768R 0.17 TCGA-HU-8602-01 17 48267440 48267440 G A COL1A1 Silent p.G827G 0.26 TCGA-HU-8602-01 17 48433967 48433967 C - XYLT2 Frame_Shift_Del p.G529Afs*78 0.35 TCGA-HU-8602-01 17 48603286 48603286 G A MYCBPAP Nonsense_Mutation p.W652* 0.32 TCGA-HU-8602-01 17 48917254 48917254 C - WFIKKN2 Frame_Shift_Del p.P203Lfs*25 0.13 TCGA-HU-8602-01 17 53342893 53342893 G A HLF Silent p.P16P 0.29 TCGA-HU-8602-01 17 53398248 53398248 T - HLF 3'UTR 0.44 TCGA-HU-8602-01 17 55058503 55058503 G A SCPEP1 Missense_Mutation p.R46H 0.07 deleterious(0.01) probably_damaging(0.994) TCGA-HU-8602-01 17 56288385 56288385 T C MKS1 Splice_Site p.X306_splice 0.07 TCGA-HU-8602-01 17 57290863 57290863 A G SMG8 Silent p.S893S 0.08 TCGA-HU-8602-01 17 57654713 57654713 A T DHX40 Missense_Mutation p.I354L 0.16 tolerated(0.06) probably_damaging(0.968) TCGA-HU-8602-01 17 61781804 61781804 G - STRADA Frame_Shift_Del p.R333Gfs*42 0.27 TCGA-HU-8602-01 17 62856347 62856347 C T LRRC37A3 Missense_Mutation p.R1306H 0.22 tolerated(0.38) benign(0.006) TCGA-HU-8602-01 17 63666 63666 C T RPH3AL Missense_Mutation p.G309S 0.21 tolerated_low_confidence(0.48) possibly_damaging(0.855) TCGA-HU-8602-01 17 63685280 63685280 T - CEP112 Frame_Shift_Del p.K888Nfs*13 0.22 TCGA-HU-8602-01 17 63739219 63739221 CTT - CEP112 In_Frame_Del p.K858del 0.23 TCGA-HU-8602-01 17 6493254 6493254 G A KIAA0753 Silent p.A877A 0.16 TCGA-HU-8602-01 17 65050148 65050148 G A CACNG1 Missense_Mutation p.G89D 0.20 deleterious(0.02) probably_damaging(0.976) TCGA-HU-8602-01 17 65889728 65889728 C T BPTF Silent p.N766N 0.23 TCGA-HU-8602-01 17 65900946 65900946 G A BPTF Silent p.S934S 0.24 TCGA-HU-8602-01 17 66526596 66526596 G A PRKAR1A 3'UTR 0.22 TCGA-HU-8602-01 17 6690225 6690225 C T FBXO39 Missense_Mutation p.R384W 0.22 deleterious(0) possibly_damaging(0.863) TCGA-HU-8602-01 17 67178331 67178331 G A ABCA10 Missense_Mutation p.T911M 0.28 deleterious(0.01) probably_damaging(0.988) TCGA-HU-8602-01 17 704255 704255 G A NXN Silent p.T414T 0.21 TCGA-HU-8602-01 17 7093935 7093935 G A DLG4 3'UTR 0.17 TCGA-HU-8602-01 17 72860081 72860081 C T FDXR Missense_Mutation p.V414M 0.17 deleterious(0) probably_damaging(0.924) TCGA-HU-8602-01 17 72926394 72926394 G A OTOP2 Missense_Mutation p.G222R 0.30 deleterious(0.02) benign(0.076) TCGA-HU-8602-01 17 72951939 72951939 C T HID1 Silent p.L528L 0.22 TCGA-HU-8602-01 17 72998316 72998316 A G CDR2L Missense_Mutation p.S167G 0.31 tolerated(0.42) benign(0.005) TCGA-HU-8602-01 17 7329861 7329861 A G C17orf74 Missense_Mutation p.Y184C 0.26 tolerated(0.18) benign(0.26) TCGA-HU-8602-01 17 73487871 73487871 C - KIAA0195 Frame_Shift_Del p.E498Sfs*20 0.17 TCGA-HU-8602-01 17 73491063 73491063 C - KIAA0195 Frame_Shift_Del p.S895Pfs*13 0.24 TCGA-HU-8602-01 17 73501711 73501711 A G CASKIN2 Missense_Mutation p.V286A 0.17 deleterious(0) probably_damaging(0.973) TCGA-HU-8602-01 17 73728020 73728020 C T ITGB4 Missense_Mutation p.A448V 0.10 tolerated(0.94) benign(0.004) TCGA-HU-8602-01 17 73805997 73805997 C T UNK Silent p.D87D 0.18 TCGA-HU-8602-01 17 74079765 74079765 G A EXOC7 Silent p.G724G 0.18 TCGA-HU-8602-01 17 77757794 77757794 G T CBX2 Missense_Mutation p.K184N 0.17 deleterious(0) possibly_damaging(0.838) TCGA-HU-8602-01 17 78039298 78039298 C T CCDC40 Silent p.I485I 0.12 TCGA-HU-8602-01 17 78063670 78063670 T C CCDC40 Missense_Mutation p.I940T 0.22 deleterious(0) probably_damaging(0.959) TCGA-HU-8602-01 17 78086379 78086379 C T GAA Missense_Mutation p.A586V 0.25 deleterious(0.04) probably_damaging(0.927) TCGA-HU-8602-01 17 78346893 78346893 G C RNF213 Missense_Mutation p.E4290D 0.35 benign(0.037) TCGA-HU-8602-01 17 7835194 7835194 C A TRAPPC1 5'UTR 0.19 TCGA-HU-8602-01 17 78449519 78449519 C T NPTX1 Splice_Site p.X149_splice 0.13 TCGA-HU-8602-01 17 79077743 79077743 G A BAIAP2 Missense_Mutation p.G301S 0.20 tolerated(0.05) probably_damaging(0.958) TCGA-HU-8602-01 17 79954320 79954320 C T ASPSCR1 Silent p.P177P 0.21 TCGA-HU-8602-01 17 79974836 79974836 G A ASPSCR1 Missense_Mutation p.G593R 0.12 tolerated(0.71) benign(0) TCGA-HU-8602-01 17 80037389 80037389 C A FASN Missense_Mutation p.Q2414H 0.23 tolerated(0.08) benign(0.002) TCGA-HU-8602-01 17 80402350 80402350 G A C17orf62 Missense_Mutation p.T139M 0.23 deleterious(0) probably_damaging(0.999) TCGA-HU-8602-01 17 80708552 80708552 A C FN3K Missense_Mutation p.N284T 0.28 deleterious(0) benign(0.216) TCGA-HU-8602-01 17 8219438 8219438 G A ARHGEF15 Missense_Mutation p.R559H 0.27 deleterious(0) probably_damaging(1) TCGA-HU-8602-01 17 8455425 8455425 T - MYH10 Frame_Shift_Del p.D287Mfs*19 0.15 TCGA-HU-8602-01 18 10471815 10471815 C T APCDD1 Silent p.D177D 0.23 TCGA-HU-8602-01 18 10548342 10548342 T C NAPG Missense_Mutation p.V211A 0.25 deleterious(0) possibly_damaging(0.893) TCGA-HU-8602-01 18 11752359 11752359 C T GNAL Intron 0.25 TCGA-HU-8602-01 18 18562783 18562783 C A ROCK1 Nonsense_Mutation p.G834* 0.15 TCGA-HU-8602-01 18 18625422 18625422 A - ROCK1 Frame_Shift_Del p.Y141Mfs*12 0.16 TCGA-HU-8602-01 18 19995553 19995553 G - CTAGE1 Frame_Shift_Del p.P741Qfs*15 0.24 TCGA-HU-8602-01 18 19997740 19997740 C A CTAGE1 Missense_Mutation p.W12L 0.22 tolerated(0.07) possibly_damaging(0.543) TCGA-HU-8602-01 18 21121037 21121037 T A NPC1 Missense_Mutation p.I837F 0.30 tolerated(0.28) benign(0.008) TCGA-HU-8602-01 18 24441102 24441102 A G AQP4 Missense_Mutation p.L202S 0.26 deleterious(0) probably_damaging(0.975) TCGA-HU-8602-01 18 30349891 30349891 G A KLHL14 Missense_Mutation p.R222C 0.18 tolerated(0.26) benign(0.002) TCGA-HU-8602-01 18 3067480 3067480 A G MYOM1 Missense_Mutation p.L1613P 0.21 deleterious(0) probably_damaging(0.994) TCGA-HU-8602-01 18 31803204 31803204 C A NOL4 Missense_Mutation p.R5L 0.14 tolerated(0.08) probably_damaging(0.99) TCGA-HU-8602-01 18 33694199 33694199 G A SLC39A6 Silent p.H568H 0.22 TCGA-HU-8602-01 18 40857246 40857246 T - SYT4 Frame_Shift_Del p.M1? 0.16 TCGA-HU-8602-01 18 43495561 43495561 C T EPG5 Missense_Mutation p.R1203Q 0.22 tolerated(0.23) probably_damaging(0.947) TCGA-HU-8602-01 18 44336461 44336461 G A ST8SIA5 Missense_Mutation p.A4V 0.15 benign(0.073) TCGA-HU-8602-01 18 44660950 44660950 A G HDHD2 Missense_Mutation p.L76P 0.22 deleterious(0) probably_damaging(1) TCGA-HU-8602-01 18 46163044 46163044 C A CTIF Silent p.A80A 0.16 TCGA-HU-8602-01 18 46808386 46808386 C T DYM Missense_Mutation p.R369H 0.16 deleterious(0) probably_damaging(0.991) TCGA-HU-8602-01 18 48473570 48473570 A G ME2 3'UTR 0.20 TCGA-HU-8602-01 18 50592432 50592432 G A DCC Missense_Mutation p.R386Q 0.21 tolerated(1) benign(0.033) TCGA-HU-8602-01 18 55315636 55315637 - CA ATP8B1 3'UTR 0.36 TCGA-HU-8602-01 18 56202918 56202918 C T ALPK2 Missense_Mutation p.G1501S 0.25 tolerated(0.41) benign(0.225) TCGA-HU-8602-01 18 58039585 58039585 T C MC4R 5'UTR 0.10 TCGA-HU-8602-01 18 580933 580933 G T CETN1 3'UTR 0.17 TCGA-HU-8602-01 18 7013850 7013850 G A LAMA1 Silent p.C1109C 0.18 TCGA-HU-8602-01 18 7036027 7036027 C T LAMA1 Missense_Mutation p.V600I 0.19 tolerated(0.18) benign(0.315) TCGA-HU-8602-01 18 74092152 74092152 C T ZNF516 Missense_Mutation p.G640S 0.05 tolerated(1) benign(0.01) TCGA-HU-8602-01 18 74536226 74536226 C T ZNF236 5'UTR 0.22 TCGA-HU-8602-01 18 74639294 74639294 C T ZNF236 Missense_Mutation p.T1410M 0.33 deleterious(0) possibly_damaging(0.684) TCGA-HU-8602-01 18 9888061 9888061 A - TXNDC2 Frame_Shift_Del p.E531Kfs*22 0.20 TCGA-HU-8602-01 19 10385679 10385679 A G ICAM1 Silent p.T102T 0.26 TCGA-HU-8602-01 19 10421567 10421567 A G FDX1L Silent p.S119S 0.16 TCGA-HU-8602-01 19 10463634 10463634 G A TYK2 Silent p.R1056R 0.20 TCGA-HU-8602-01 19 10463657 10463657 G A TYK2 Missense_Mutation p.P1049S 0.22 deleterious(0.01) probably_damaging(1) TCGA-HU-8602-01 19 1074618 1074618 C T HMHA1 Silent p.H349H 0.18 TCGA-HU-8602-01 19 1080043 1080043 C T HMHA1 Silent p.H559H 0.23 TCGA-HU-8602-01 19 10893692 10893692 C T DNM2 Missense_Mutation p.R249C 0.19 deleterious(0) possibly_damaging(0.849) TCGA-HU-8602-01 19 11289278 11289278 C T KANK2 Silent p.E456E 0.26 TCGA-HU-8602-01 19 11465355 11465355 G A CCDC159 Missense_Mutation p.G291D 0.27 tolerated_low_confidence(0.8) benign(0.175) TCGA-HU-8602-01 19 11598444 11598444 G A ZNF653 Silent p.C278C 0.17 TCGA-HU-8602-01 19 11687248 11687248 C T ACP5 Missense_Mutation p.R182H 0.25 tolerated(0.08) possibly_damaging(0.659) TCGA-HU-8602-01 19 1226472 1226472 G T STK11 Missense_Mutation p.E376D 0.18 tolerated(0.1) benign(0.002) TCGA-HU-8602-01 19 12693682 12693682 T - ZNF490 Frame_Shift_Del p.N111Tfs*6 0.24 TCGA-HU-8602-01 19 12783928 12783928 C T WDR83 Silent p.G227G 0.17 TCGA-HU-8602-01 19 12800607 12800607 C T FBXW9 Missense_Mutation p.A372T 0.20 tolerated(0.54) benign(0.004) TCGA-HU-8602-01 19 12902771 12902771 C T JUNB Silent p.G62G 0.38 TCGA-HU-8602-01 19 13080609 13080609 A G DAND5 Silent p.P45P 0.17 TCGA-HU-8602-01 19 13414693 13414693 C T CACNA1A Silent p.L664L 0.25 TCGA-HU-8602-01 19 1460273 1460273 C T APC2 Missense_Mutation p.A466V 0.27 possibly_damaging(0.773) TCGA-HU-8602-01 19 15067447 15067447 C - SLC1A6 Frame_Shift_Del p.G337Vfs*8 0.15 TCGA-HU-8602-01 19 15133898 15133898 G A CCDC105 Silent p.P489P 0.23 TCGA-HU-8602-01 19 16620476 16620476 G A C19orf44 Missense_Mutation p.S439N 0.24 tolerated(0.51) benign(0.366) TCGA-HU-8602-01 19 17597507 17597507 C T SLC27A1 Silent p.G101G 0.26 TCGA-HU-8602-01 19 17641670 17641670 C A FAM129C Silent p.T85T 0.12 TCGA-HU-8602-01 19 17752292 17752292 G C UNC13A Missense_Mutation p.A849G 0.28 deleterious(0.03) possibly_damaging(0.815) TCGA-HU-8602-01 19 17785510 17785510 G A UNC13A Silent p.I36I 0.23 TCGA-HU-8602-01 19 19135651 19135651 G A SUGP2 Silent p.V502V 0.22 TCGA-HU-8602-01 19 19141906 19141906 A - SUGP2 5'UTR 0.23 TCGA-HU-8602-01 19 19221753 19221753 G - SLC25A42 3'UTR 0.14 TCGA-HU-8602-01 19 19625628 19625628 G A TSSK6 Silent p.Y203Y 0.25 TCGA-HU-8602-01 19 19655446 19655446 C T CILP2 Missense_Mutation p.R698W 0.21 deleterious(0.04) possibly_damaging(0.513) TCGA-HU-8602-01 19 20230066 20230066 A G ZNF90 Missense_Mutation p.E568G 0.17 deleterious(0.02) possibly_damaging(0.842) TCGA-HU-8602-01 19 20235949 20235949 A G CTC-260E6.2 RNA 0.12 TCGA-HU-8602-01 19 20236361 20236361 A - CTC-260E6.2 3'Flank 0.43 TCGA-HU-8602-01 19 22157258 22157258 C A ZNF208 Missense_Mutation p.R193I 0.19 tolerated(0.12) benign(0.006) TCGA-HU-8602-01 19 22157493 22157493 T - ZNF208 Frame_Shift_Del p.I115Lfs*23 0.21 TCGA-HU-8602-01 19 23159532 23159532 T C ZNF728 Missense_Mutation p.S203G 0.14 deleterious(0.01) benign(0.001) TCGA-HU-8602-01 19 2422184 2422184 T C TMPRSS9 Silent p.T795T 0.26 TCGA-HU-8602-01 19 2934127 2934127 A G ZNF77 Missense_Mutation p.F333S 0.25 deleterious(0) probably_damaging(0.998) TCGA-HU-8602-01 19 32845589 32845589 A G ZNF507 Missense_Mutation p.Q618R 0.20 deleterious(0.02) possibly_damaging(0.775) TCGA-HU-8602-01 19 32874004 32874004 C T ZNF507 3'UTR 0.27 TCGA-HU-8602-01 19 34919408 34919408 G T UBA2 Missense_Mutation p.G24V 0.38 deleterious(0) probably_damaging(0.999) TCGA-HU-8602-01 19 35510163 35510163 C A GRAMD1A Missense_Mutation p.P428T 0.18 tolerated(1) benign(0.024) TCGA-HU-8602-01 19 35770093 35770093 C T USF2 Silent p.N325N 0.30 TCGA-HU-8602-01 19 35940753 35940753 T C FFAR2 Missense_Mutation p.I46T 0.19 deleterious(0) probably_damaging(0.966) TCGA-HU-8602-01 19 36034180 36034180 A - GAPDHS Intron 0.24 TCGA-HU-8602-01 19 36166831 36166831 G A UPK1A Nonsense_Mutation p.W186* 0.24 TCGA-HU-8602-01 19 36205601 36205601 C T ZBTB32 Missense_Mutation p.R25W 0.23 tolerated(0.12) probably_damaging(0.92) TCGA-HU-8602-01 19 3624114 3624114 G A CACTIN Missense_Mutation p.R72W 0.23 tolerated_low_confidence(0.07) unknown(0) TCGA-HU-8602-01 19 36435548 36435548 C T LRFN3 Missense_Mutation p.T505M 0.18 deleterious(0) probably_damaging(0.999) TCGA-HU-8602-01 19 36530862 36530862 C T THAP8 Missense_Mutation p.R87Q 0.31 tolerated(0.63) benign(0.002) TCGA-HU-8602-01 19 3653477 3653477 G A PIP5K1C Silent p.R244R 0.27 TCGA-HU-8602-01 19 36831891 36831891 A C ZFP14 Silent p.T279T 0.08 TCGA-HU-8602-01 19 37440991 37441001 GAAAGCCTTCA - ZNF568 Frame_Shift_Del p.K313Sfs*7 0.10 TCGA-HU-8602-01 19 3746525 3746525 C T TJP3 Missense_Mutation p.R694C 0.17 deleterious(0.02) benign(0.171) TCGA-HU-8602-01 19 37619900 37619900 A G ZNF420 Silent p.K669K 0.15 TCGA-HU-8602-01 19 37644081 37644082 TC - ZNF585A Frame_Shift_Del p.R185Tfs*3 0.26 TCGA-HU-8602-01 19 38127036 38127036 T - ZFP30 Frame_Shift_Del p.M136Cfs*156 0.21 TCGA-HU-8602-01 19 38190550 38190550 T C ZNF607 Missense_Mutation p.Q161R 0.21 deleterious(0.05) possibly_damaging(0.548) TCGA-HU-8602-01 19 38951087 38951087 T C RYR1 Silent p.H811H 0.06 TCGA-HU-8602-01 19 39219765 39219765 G A ACTN4 Missense_Mutation p.A850T 0.21 tolerated(0.11) probably_damaging(0.988) TCGA-HU-8602-01 19 39306597 39306597 G A ECH1 Missense_Mutation p.A261V 0.32 deleterious(0) probably_damaging(0.998) TCGA-HU-8602-01 19 39361234 39361234 G A RINL Missense_Mutation p.L334F 0.42 tolerated(0.24) benign(0.001) TCGA-HU-8602-01 19 3959614 3959614 G A DAPK3 Missense_Mutation p.R284C 0.33 deleterious(0) possibly_damaging(0.54) TCGA-HU-8602-01 19 39786982 39786983 AC - IFNL1 5'UTR 0.14 TCGA-HU-8602-01 19 40006574 40006574 T C SELV Missense_Mutation p.I241T 0.21 tolerated(0.36) benign(0.022) TCGA-HU-8602-01 19 40149273 40149273 T C LGALS16 Missense_Mutation p.F89S 0.31 deleterious(0) probably_damaging(1) TCGA-HU-8602-01 19 40832287 40832287 G A C19orf47 Silent p.T219T 0.22 TCGA-HU-8602-01 19 41135394 41135394 G A LTBP4 Missense_Mutation p.R1604H 0.19 tolerated(0.39) possibly_damaging(0.817) TCGA-HU-8602-01 19 41759598 41759598 C T AXL Missense_Mutation p.A674V 0.22 deleterious(0) probably_damaging(0.997) TCGA-HU-8602-01 19 41763458 41763458 G A AXL Missense_Mutation p.V753M 0.24 deleterious(0) probably_damaging(0.999) TCGA-HU-8602-01 19 41782157 41782157 G A HNRNPUL1 Missense_Mutation p.R247H 0.26 deleterious(0) unknown(0) TCGA-HU-8602-01 19 41869382 41869382 C T B9D2 Missense_Mutation p.G15S 0.19 deleterious(0.05) possibly_damaging(0.833) TCGA-HU-8602-01 19 41888686 41888686 T C TMEM91 Missense_Mutation p.S74P 0.25 deleterious(0.01) probably_damaging(0.987) TCGA-HU-8602-01 19 42125698 42125698 G A CEACAM4 3'UTR 0.20 TCGA-HU-8602-01 19 4216637 4216637 G A ANKRD24 Missense_Mutation p.A494T 0.21 tolerated(0.1) possibly_damaging(0.811) TCGA-HU-8602-01 19 42406950 42406950 C T ARHGEF1 Missense_Mutation p.P562L 0.19 deleterious(0) probably_damaging(0.997) TCGA-HU-8602-01 19 42585031 42585031 G A ZNF574 Missense_Mutation p.R758H 0.17 deleterious(0.01) probably_damaging(0.96) TCGA-HU-8602-01 19 42794441 42794441 C - CIC Frame_Shift_Del p.P509Hfs*14 0.25 TCGA-HU-8602-01 19 42794627 42794627 C - CIC Frame_Shift_Del p.L571Yfs*157 0.28 TCGA-HU-8602-01 19 44740652 44740652 G C ZNF227 Missense_Mutation p.C690S 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-HU-8602-01 19 44947008 44947008 A G ZNF229 Silent p.H8H 0.24 TCGA-HU-8602-01 19 44982020 44982020 T - ZNF180 Frame_Shift_Del p.K226Nfs*8 0.15 TCGA-HU-8602-01 19 45493718 45493718 G A CLPTM1 Missense_Mutation p.V400I 0.12 tolerated(0.2) possibly_damaging(0.526) TCGA-HU-8602-01 19 45575703 45575703 G A ZNF296 Missense_Mutation p.P195L 0.29 deleterious(0.01) possibly_damaging(0.588) TCGA-HU-8602-01 19 45852769 45852769 A G KLC3 Missense_Mutation p.D351G 0.17 deleterious(0) benign(0.119) TCGA-HU-8602-01 19 45854275 45854275 G T KLC3 Missense_Mutation p.Q481H 0.17 deleterious(0.05) benign(0.289) TCGA-HU-8602-01 19 45912587 45912587 G T CD3EAP Missense_Mutation p.R454M 0.26 tolerated(0.09) benign(0.43) TCGA-HU-8602-01 19 46029457 46029457 G A VASP 3'UTR 0.32 TCGA-HU-8602-01 19 46393818 46393818 C T MYPOP 3'UTR 0.21 TCGA-HU-8602-01 19 46879730 46879730 G A PPP5C Missense_Mutation p.G178R 0.25 deleterious(0) probably_damaging(1) TCGA-HU-8602-01 19 47883099 47883099 C T DHX34 Missense_Mutation p.R947C 0.20 deleterious(0) probably_damaging(0.957) TCGA-HU-8602-01 19 47969321 47969321 C T SLC8A2 Missense_Mutation p.G114S 0.24 deleterious(0) probably_damaging(1) TCGA-HU-8602-01 19 47986421 47986421 G A KPTN Missense_Mutation p.A149V 0.31 tolerated(0.05) benign(0.072) TCGA-HU-8602-01 19 47996224 47996224 G A NAPA Silent p.Y185Y 0.21 TCGA-HU-8602-01 19 49131875 49131876 TC - SPHK2 Intron 0.25 TCGA-HU-8602-01 19 49206646 49206646 G A FUT2 Missense_Mutation p.V145I 0.24 tolerated(0.15) probably_damaging(0.999) TCGA-HU-8602-01 19 49230076 49230076 C T RASIP1 Missense_Mutation p.C698Y 0.24 tolerated(1) benign(0.008) TCGA-HU-8602-01 19 49253922 49253922 C T FUT1 Missense_Mutation p.R206H 0.21 tolerated(0.23) benign(0.014) TCGA-HU-8602-01 19 49340773 49340773 C T PLEKHA4 Missense_Mutation p.G705S 0.22 tolerated_low_confidence(0.23) benign(0.001) TCGA-HU-8602-01 19 49564798 49564798 C - NTF4 Frame_Shift_Del p.A153Qfs*28 0.20 TCGA-HU-8602-01 19 49641625 49641625 G A PPFIA3 Missense_Mutation p.G673S 0.17 tolerated(0.06) probably_damaging(0.999) TCGA-HU-8602-01 19 49692316 49692316 G A TRPM4 Missense_Mutation p.A663T 0.34 tolerated(0.22) benign(0.15) TCGA-HU-8602-01 19 50188254 50188254 T C PRMT1 Missense_Mutation p.V240A 0.25 deleterious(0.01) probably_damaging(0.992) TCGA-HU-8602-01 19 50189419 50189419 C T PRMT1 Missense_Mutation p.R277W 0.18 deleterious(0) probably_damaging(0.986) TCGA-HU-8602-01 19 51298304 51298304 A G ACPT Silent p.P390P 0.27 TCGA-HU-8602-01 19 51628959 51628959 C A SIGLEC9 Missense_Mutation p.P176H 0.33 deleterious(0.03) probably_damaging(0.997) TCGA-HU-8602-01 19 51826934 51826934 C T IGLON5 Silent p.H59H 0.33 TCGA-HU-8602-01 19 52004970 52004970 T C SIGLEC12 Silent p.L6L 0.34 TCGA-HU-8602-01 19 53086002 53086002 A - ZNF701 Frame_Shift_Del p.K298Nfs*4 0.11 TCGA-HU-8602-01 19 53432346 53432346 T G ZNF321P Missense_Mutation p.Q171P 0.38 tolerated(0.09) benign(0.017) TCGA-HU-8602-01 19 5456055 5456055 G A ZNRF4 Missense_Mutation p.V185M 0.20 deleterious(0) possibly_damaging(0.645) TCGA-HU-8602-01 19 5456643 5456643 C - ZNRF4 Frame_Shift_Del p.I383Sfs*? 0.12 TCGA-HU-8602-01 19 54652128 54652128 C A CNOT3 Silent p.P380P 0.15 TCGA-HU-8602-01 19 54761090 54761090 C T LILRB5 5'UTR 0.22 TCGA-HU-8602-01 19 54848404 54848404 A G LILRA4 Silent p.S321S 0.25 TCGA-HU-8602-01 19 54973589 54973589 G - LENG9 Frame_Shift_Del p.P396Lfs*3 0.28 TCGA-HU-8602-01 19 55143504 55143506 AGG - LILRB1 In_Frame_Del p.G160del 0.16 TCGA-HU-8602-01 19 55179347 55179347 G A LILRB4 Silent p.Q408Q 0.14 TCGA-HU-8602-01 19 55593835 55593836 - G EPS8L1 Frame_Shift_Ins p.P363Afs*28 0.31 TCGA-HU-8602-01 19 55758483 55758483 G T PPP6R1 Intron 0.12 TCGA-HU-8602-01 19 55889086 55889086 G A TMEM190 Missense_Mutation p.E74K 0.15 deleterious(0.05) benign(0.003) TCGA-HU-8602-01 19 56736258 56736258 G A ZSCAN5A Missense_Mutation p.P53L 0.46 tolerated(0.27) possibly_damaging(0.879) TCGA-HU-8602-01 19 56953952 56953952 G A ZNF667 Missense_Mutation p.H138Y 0.35 tolerated(0.07) possibly_damaging(0.575) TCGA-HU-8602-01 19 57133564 57133564 C T ZNF71 Silent p.C303C 0.17 TCGA-HU-8602-01 19 57133847 57133847 A G ZNF71 Missense_Mutation p.I398V 0.10 tolerated(0.23) benign(0.001) TCGA-HU-8602-01 19 57176308 57176308 C A ZNF835 Missense_Mutation p.G87W 0.13 tolerated(0.09) possibly_damaging(0.624) TCGA-HU-8602-01 19 57956100 57956100 G A ZNF749 Silent p.Q528Q 0.17 TCGA-HU-8602-01 19 58005254 58005254 G A ZNF419 Missense_Mutation p.M444I 0.35 tolerated(0.87) benign(0.002) TCGA-HU-8602-01 19 58048899 58048899 C A ZNF549 Missense_Mutation p.P176H 0.18 tolerated(1) benign(0.001) TCGA-HU-8602-01 19 58420052 58420052 A G ZNF417 Missense_Mutation p.C532R 0.20 tolerated(0.7) benign(0.003) TCGA-HU-8602-01 19 5844463 5844464 - C FUT3 Frame_Shift_Ins p.Q130Afs*13 0.24 TCGA-HU-8602-01 19 58946192 58946192 G T ZNF132 Missense_Mutation p.L207I 0.32 tolerated(0.11) benign(0.004) TCGA-HU-8602-01 19 59058826 59058826 T C TRIM28 Missense_Mutation p.C224R 0.27 deleterious(0) probably_damaging(0.998) TCGA-HU-8602-01 19 7585009 7585009 C T ZNF358 Missense_Mutation p.P294L 0.24 deleterious(0.04) probably_damaging(0.999) TCGA-HU-8602-01 19 7585714 7585714 A T ZNF358 Missense_Mutation p.N529I 0.18 tolerated_low_confidence(0.12) benign(0.001) TCGA-HU-8602-01 19 7591756 7591756 G A MCOLN1 Missense_Mutation p.R172Q 0.24 tolerated(0.24) benign(0.118) TCGA-HU-8602-01 19 7607555 7607555 G A PNPLA6 Missense_Mutation p.R463Q 0.12 tolerated(0.28) benign(0.058) TCGA-HU-8602-01 19 7911452 7911452 C T EVI5L Silent p.P8P 0.21 TCGA-HU-8602-01 19 8002975 8002975 T - TIMM44 Frame_Shift_Del p.K83Nfs*9 0.16 TCGA-HU-8602-01 19 815829 815829 A T LPPR3 Missense_Mutation p.I33N 0.10 deleterious(0) possibly_damaging(0.571) TCGA-HU-8602-01 19 8369983 8369983 C T CD320 Missense_Mutation p.C67Y 0.35 tolerated(0.07) possibly_damaging(0.811) TCGA-HU-8602-01 19 8550759 8550759 G A HNRNPM Missense_Mutation p.V483M 0.18 tolerated(0.69) benign(0.022) TCGA-HU-8602-01 19 8953929 8953929 A T MBD3L1 Missense_Mutation p.E192V 0.21 deleterious(0.02) benign(0.1) TCGA-HU-8602-01 19 8993496 8993496 G A MUC16 Missense_Mutation p.R13865C 0.20 probably_damaging(0.969) TCGA-HU-8602-01 19 9000464 9000464 G A MUC16 Missense_Mutation p.T13507M 0.25 probably_damaging(0.985) TCGA-HU-8602-01 1 103573701 103573701 G A COL11A1 Missense_Mutation p.R12W 0.23 benign(0.177) TCGA-HU-8602-01 1 10725422 10725422 G T CASZ1 Silent p.R75R 0.23 TCGA-HU-8602-01 1 107867123 107867123 C T NTNG1 Missense_Mutation p.R156C 0.22 deleterious(0) probably_damaging(1) TCGA-HU-8602-01 1 110086062 110086062 C T GPR61 Missense_Mutation p.R140C 0.14 deleterious(0) probably_damaging(1) TCGA-HU-8602-01 1 110254920 110254920 G A GSTM5 5'UTR 0.24 TCGA-HU-8602-01 1 110655092 110655092 G A UBL4B 5'UTR 0.07 TCGA-HU-8602-01 1 110883440 110883440 G A RBM15 Silent p.L471L 0.20 TCGA-HU-8602-01 1 111892836 111892836 A - PIFO Frame_Shift_Del p.A168Lfs*19 0.15 TCGA-HU-8602-01 1 11562052 11562052 C - PTCHD2 Frame_Shift_Del p.S337Afs*4 0.18 TCGA-HU-8602-01 1 11589919 11589919 G T PTCHD2 Missense_Mutation p.R1002L 0.15 deleterious(0) probably_damaging(0.954) TCGA-HU-8602-01 1 11893605 11893605 T - CLCN6 Frame_Shift_Del p.C430Vfs*73 0.22 TCGA-HU-8602-01 1 119575715 119575715 C T WARS2 Missense_Mutation p.R301H 0.19 tolerated(0.42) benign(0.003) TCGA-HU-8602-01 1 12144597 12144597 G A TNFRSF8 Missense_Mutation p.R47H 0.25 deleterious(0.01) possibly_damaging(0.895) TCGA-HU-8602-01 1 13933720 13933720 C T PDPN Silent p.G116G 0.15 TCGA-HU-8602-01 1 146696723 146696723 G A FMO5 Intron 0.23 TCGA-HU-8602-01 1 149898777 149898777 T C SF3B4 Missense_Mutation p.D66G 0.15 deleterious(0) probably_damaging(0.995) TCGA-HU-8602-01 1 150325478 150325478 T G PRPF3 3'UTR 0.15 TCGA-HU-8602-01 1 151495931 151495931 T C CGN Missense_Mutation p.S388P 0.15 tolerated(0.11) benign(0.009) TCGA-HU-8602-01 1 151739707 151739707 C A OAZ3 Missense_Mutation p.L34I 0.28 tolerated(0.57) benign(0.22) TCGA-HU-8602-01 1 152081372 152081372 G A TCHH Missense_Mutation p.R1441C 0.22 unknown(0) TCGA-HU-8602-01 1 152975993 152975993 C T SPRR3 Missense_Mutation p.T166I 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-HU-8602-01 1 153701021 153701021 C - INTS3 5'UTR 0.20 TCGA-HU-8602-01 1 155041388 155041388 G - EFNA4 Intron 0.22 TCGA-HU-8602-01 1 155223469 155223470 GT - FAM189B Frame_Shift_Del p.S191Cfs*20 0.17 TCGA-HU-8602-01 1 155448115 155448115 G A ASH1L Missense_Mutation p.R1516C 0.26 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-HU-8602-01 1 156020124 156020124 A G UBQLN4 Silent p.P233P 0.18 TCGA-HU-8602-01 1 156214507 156214507 C T PAQR6 Missense_Mutation p.A163T 0.30 deleterious_low_confidence(0) benign(0.004) TCGA-HU-8602-01 1 156844801 156844801 G A NTRK1 Splice_Site p.X452_splice 0.25 TCGA-HU-8602-01 1 156931470 156931470 G A ARHGEF11 Missense_Mutation p.A413V 0.23 deleterious(0) probably_damaging(0.927) TCGA-HU-8602-01 1 1569945 1569945 C T MMP23B Missense_Mutation p.R373C 0.17 deleterious(0) probably_damaging(0.998) TCGA-HU-8602-01 1 157488559 157488559 A G FCRL5 Missense_Mutation p.S892P 0.23 tolerated(0.35) benign(0.006) TCGA-HU-8602-01 1 157767978 157767978 C A FCRL1 Missense_Mutation p.G363W 0.19 deleterious(0.02) possibly_damaging(0.571) TCGA-HU-8602-01 1 158517426 158517426 C T OR6Y1 Missense_Mutation p.G157E 0.24 deleterious(0) probably_damaging(1) TCGA-HU-8602-01 1 158669761 158669761 G A OR6K2 Missense_Mutation p.R228C 0.24 deleterious(0.01) benign(0.082) TCGA-HU-8602-01 1 159021772 159021772 C T IFI16 Nonsense_Mutation p.R601* 0.25 TCGA-HU-8602-01 1 15909876 15909876 C T AGMAT Missense_Mutation p.R96H 0.10 tolerated(0.11) benign(0.021) TCGA-HU-8602-01 1 160012305 160012305 C A KCNJ10 Missense_Mutation p.K6N 0.28 tolerated_low_confidence(0.06) benign(0.018) TCGA-HU-8602-01 1 160098840 160098840 C T ATP1A2 Silent p.A429A 0.17 TCGA-HU-8602-01 1 160125856 160125856 T C ATP1A4 Missense_Mutation p.S145P 0.22 deleterious(0.03) benign(0.13) TCGA-HU-8602-01 1 16053855 16053855 G A PLEKHM2 Missense_Mutation p.A430T 0.31 tolerated_low_confidence(0.73) benign(0.001) TCGA-HU-8602-01 1 161161324 161161324 G A ADAMTS4 Silent p.P706P 0.17 TCGA-HU-8602-01 1 161569498 161569498 G A FCGR2C Intron 0.23 TCGA-HU-8602-01 1 161967829 161967829 A C OLFML2B Silent p.T420T 0.23 TCGA-HU-8602-01 1 16524955 16524955 C A ARHGEF19 3'UTR 0.30 TCGA-HU-8602-01 1 16531855 16531855 C T ARHGEF19 Silent p.A549A 0.16 TCGA-HU-8602-01 1 165697156 165697156 G C TMCO1 3'UTR 0.42 TCGA-HU-8602-01 1 169364416 169364416 T - CCDC181 Frame_Shift_Del p.M466Wfs*16 0.24 TCGA-HU-8602-01 1 16945655 16945655 T C RP5-1182A14.5 3'Flank 0.05 TCGA-HU-8602-01 1 169513570 169513570 G A F5 Missense_Mutation p.R647C 0.09 tolerated(0.06) benign(0.055) TCGA-HU-8602-01 1 170967433 170967433 T C MROH9 Intron 0.09 TCGA-HU-8602-01 1 171484936 171484936 A - PRRC2C Frame_Shift_Del p.E156Kfs*66 0.28 TCGA-HU-8602-01 1 172629232 172629232 T C FASLG Intron 0.27 TCGA-HU-8602-01 1 173807354 173807354 G A DARS2 Missense_Mutation p.R266Q 0.16 deleterious(0) probably_damaging(1) TCGA-HU-8602-01 1 17682614 17682614 G A PADI4 Missense_Mutation p.D483N 0.21 deleterious(0.05) benign(0.04) TCGA-HU-8602-01 1 179077894 179077894 T - ABL2 Frame_Shift_Del p.K836Nfs*34 0.20 TCGA-HU-8602-01 1 182025570 182025570 G A ZNF648 Missense_Mutation p.H526Y 0.23 deleterious(0.04) possibly_damaging(0.715) TCGA-HU-8602-01 1 183090856 183090856 A G LAMC1 Splice_Site p.X664_splice 0.21 TCGA-HU-8602-01 1 185703899 185703899 G A HMCN1 5'UTR 0.23 TCGA-HU-8602-01 1 185704144 185704144 T - HMCN1 Frame_Shift_Del p.F79Sfs*16 0.18 TCGA-HU-8602-01 1 185834899 185834899 T C HMCN1 Silent p.C175C 0.14 TCGA-HU-8602-01 1 185963965 185963965 G A HMCN1 Missense_Mutation p.R1175H 0.31 benign(0.122) TCGA-HU-8602-01 1 19500110 19500110 G T UBR4 Silent p.A996A 0.27 TCGA-HU-8602-01 1 19653763 19653763 G A PQLC2 Missense_Mutation p.A221T 0.31 deleterious(0.01) benign(0.327) TCGA-HU-8602-01 1 196658606 196658606 C T CFH Missense_Mutation p.R341C 0.16 tolerated(0.06) benign(0.098) TCGA-HU-8602-01 1 197073232 197073232 T - ASPM Frame_Shift_Del p.I1717* 0.21 TCGA-HU-8602-01 1 197074096 197074096 A G ASPM Missense_Mutation p.S1429P 0.20 deleterious(0.02) possibly_damaging(0.775) TCGA-HU-8602-01 1 197390635 197390635 C A CRB1 Silent p.S559S 0.18 TCGA-HU-8602-01 1 200944729 200944729 G A KIF21B Silent p.Y1504Y 0.22 TCGA-HU-8602-01 1 201772835 201772863 AGAGTTGGGTAGGTAAAGGTTTGGGGGGT GAGTTGGGTAGGTAAAGGTTTGGGGGGTG NAV1 Splice_Site p.X1211_splice 0.10 TCGA-HU-8602-01 1 201781709 201781709 G A NAV1 Missense_Mutation p.R1714Q 0.25 deleterious(0.01) benign(0.428) TCGA-HU-8602-01 1 201827606 201827606 C T IPO9 Missense_Mutation p.A418V 0.21 tolerated(1) benign(0.002) TCGA-HU-8602-01 1 202119538 202119538 C T PTPN7 Missense_Mutation p.R402Q 0.29 deleterious(0) probably_damaging(1) TCGA-HU-8602-01 1 202544209 202544209 G A PPP1R12B Intron 0.33 TCGA-HU-8602-01 1 202880242 202880242 T C KLHL12 Silent p.L219L 0.25 TCGA-HU-8602-01 1 203054644 203054644 C T MYOG Missense_Mutation p.R149Q 0.24 tolerated(0.28) benign(0.01) TCGA-HU-8602-01 1 203455842 203455842 G A PRELP Missense_Mutation p.G328R 0.20 tolerated(0.05) probably_damaging(0.919) TCGA-HU-8602-01 1 204006598 204006598 C T LINC00303 RNA 0.15 TCGA-HU-8602-01 1 20471085 20471085 C A PLA2G2F Silent p.A109A 0.21 TCGA-HU-8602-01 1 204924033 204924033 C - NFASC Frame_Shift_Del p.P165Rfs*12 0.20 TCGA-HU-8602-01 1 207648182 207648182 C - CR2 Frame_Shift_Del p.P780Lfs*4 0.15 TCGA-HU-8602-01 1 208073210 208073210 T C CD34 Missense_Mutation p.H73R 0.28 tolerated(0.3) benign(0.051) TCGA-HU-8602-01 1 210948744 210948744 G T KCNH1 Silent p.A686A 0.22 TCGA-HU-8602-01 1 211447588 211447588 G A RCOR3 Missense_Mutation p.G113D 0.32 deleterious(0.02) possibly_damaging(0.901) TCGA-HU-8602-01 1 211469067 211469067 G A RCOR3 Missense_Mutation p.G330D 0.24 tolerated(0.35) benign(0.002) TCGA-HU-8602-01 1 2125537 2125537 C - C1orf86 Frame_Shift_Del p.G33Vfs*15 0.24 TCGA-HU-8602-01 1 214557534 214557534 G A PTPN14 Missense_Mutation p.T555M 0.27 deleterious(0.01) benign(0.249) TCGA-HU-8602-01 1 21771652 21771652 G A NBPF3 Missense_Mutation p.G25S 0.14 tolerated_low_confidence(0.28) benign(0.003) TCGA-HU-8602-01 1 222713546 222713546 C T HHIPL2 Missense_Mutation p.R419K 0.20 deleterious(0) probably_damaging(0.977) TCGA-HU-8602-01 1 222843548 222843548 T - AIDA Frame_Shift_Del p.R251Gfs*22 0.15 TCGA-HU-8602-01 1 223177682 223177682 C T DISP1 Silent p.S981S 0.28 TCGA-HU-8602-01 1 223947077 223947077 T C CAPN2 Missense_Mutation p.F475L 0.27 tolerated(0.35) probably_damaging(0.999) TCGA-HU-8602-01 1 225592337 225592337 T C LBR Missense_Mutation p.K519E 0.20 tolerated(0.13) benign(0.403) TCGA-HU-8602-01 1 226420811 226420811 G A LIN9 Silent p.D519D 0.23 TCGA-HU-8602-01 1 227259974 227259976 TTC - CDC42BPA In_Frame_Del p.K920del 0.21 TCGA-HU-8602-01 1 228437869 228437869 T C OBSCN Missense_Mutation p.C1505R 0.18 benign(0.232) TCGA-HU-8602-01 1 228525668 228525668 C T OBSCN Silent p.T6565T 0.21 TCGA-HU-8602-01 1 228562316 228562318 TCC - OBSCN In_Frame_Del p.L8467del 0.18 TCGA-HU-8602-01 1 228645109 228645109 G - HIST3H2A 3'UTR 0.17 TCGA-HU-8602-01 1 229771402 229771402 C A URB2 Missense_Mutation p.L348M 0.23 tolerated(0.05) possibly_damaging(0.556) TCGA-HU-8602-01 1 236306033 236306034 - C GPR137B Frame_Shift_Ins p.Y40Lfs*159 0.25 TCGA-HU-8602-01 1 236760162 236760162 C T HEATR1 Missense_Mutation p.A240T 0.20 tolerated(0.41) benign(0.179) TCGA-HU-8602-01 1 237957196 237957196 G T RYR2 Missense_Mutation p.K4604N 0.12 possibly_damaging(0.768) TCGA-HU-8602-01 1 240601495 240601495 T G FMN2 Missense_Mutation p.L1682R 0.23 benign(0.035) TCGA-HU-8602-01 1 24078404 24078404 A - TCEB3 Frame_Shift_Del p.N465Mfs*19 0.31 TCGA-HU-8602-01 1 242042268 242042269 AC - EXO1 Frame_Shift_Del p.T578Sfs*5 0.21 TCGA-HU-8602-01 1 244218133 244218133 C T ZBTB18 Missense_Mutation p.R353C 0.23 tolerated(0.05) possibly_damaging(0.855) TCGA-HU-8602-01 1 2445456 2445456 C T PANK4 Silent p.P520P 0.19 TCGA-HU-8602-01 1 245704240 245704240 G T KIF26B Silent p.P446P 0.21 TCGA-HU-8602-01 1 248616103 248616103 G A OR2T2 Missense_Mutation p.G2D 0.14 tolerated(0.43) benign(0) TCGA-HU-8602-01 1 25785186 25785186 A - TMEM57 Frame_Shift_Del p.N321Ifs*9 0.14 TCGA-HU-8602-01 1 26349804 26349804 G A EXTL1 Missense_Mutation p.G223R 0.29 tolerated(0.84) benign(0.099) TCGA-HU-8602-01 1 26795565 26795565 G T DHDDS Missense_Mutation p.Q316H 0.21 tolerated(0.13) benign(0.02) TCGA-HU-8602-01 1 26898685 26898685 C T RPS6KA1 Silent p.N625N 0.23 TCGA-HU-8602-01 1 27278809 27278809 C T C1orf172 Silent p.R21R 0.22 TCGA-HU-8602-01 1 27624505 27624505 A G WDTC1 Missense_Mutation p.T378A 0.15 tolerated(0.1) benign(0.028) TCGA-HU-8602-01 1 27680355 27680356 CT - SYTL1 3'UTR 0.16 TCGA-HU-8602-01 1 27939440 27939440 G A FGR Silent p.P525P 0.20 TCGA-HU-8602-01 1 32043047 32043047 C - TINAGL1 Frame_Shift_Del p.P101Rfs*46 0.15 TCGA-HU-8602-01 1 32096220 32096220 C T PEF1 Missense_Mutation p.M283I 0.17 tolerated(0.09) benign(0.012) TCGA-HU-8602-01 1 33235610 33235610 C T KIAA1522 Missense_Mutation p.A277V 0.17 tolerated(0.15) unknown(0) TCGA-HU-8602-01 1 33236271 33236271 T C KIAA1522 Silent p.P497P 0.24 TCGA-HU-8602-01 1 3328750 3328750 C T PRDM16 Silent p.A663A 0.23 TCGA-HU-8602-01 1 33547940 33547940 C A ADC Silent p.A30A 0.28 TCGA-HU-8602-01 1 33613029 33613029 C T TRIM62 Missense_Mutation p.D393N 0.23 tolerated(0.42) probably_damaging(0.995) TCGA-HU-8602-01 1 34401390 34401390 G A CSMD2 Missense_Mutation p.T188M 0.21 tolerated(0.11) possibly_damaging(0.498) TCGA-HU-8602-01 1 35227549 35227549 G A GJB4 Missense_Mutation p.D232N 0.07 tolerated(0.32) benign(0.017) TCGA-HU-8602-01 1 35260154 35260154 C T GJA4 Missense_Mutation p.R114W 0.29 deleterious(0.01) possibly_damaging(0.724) TCGA-HU-8602-01 1 36379454 36379454 C T AGO1 Missense_Mutation p.R532C 0.25 deleterious(0.01) probably_damaging(0.925) TCGA-HU-8602-01 1 36564488 36564489 - C COL8A2 Frame_Shift_Ins p.E265Gfs*77 0.17 TCGA-HU-8602-01 1 36754830 36754831 - G THRAP3 Frame_Shift_Ins p.S406Qfs*8 0.18 TCGA-HU-8602-01 1 36926362 36926362 T - MRPS15 Frame_Shift_Del p.I106Sfs*7 0.13 TCGA-HU-8602-01 1 37948615 37948615 A G ZC3H12A Silent p.S401S 0.22 TCGA-HU-8602-01 1 38185238 38185238 G - EPHA10 Frame_Shift_Del p.R869Gfs*10 0.17 TCGA-HU-8602-01 1 38511579 38511579 C T POU3F1 Silent p.A279A 0.17 TCGA-HU-8602-01 1 39877464 39877464 T - KIAA0754 Frame_Shift_Del p.S375Qfs*5 0.23 TCGA-HU-8602-01 1 40137681 40137681 C T NT5C1A Silent p.Q10Q 0.15 TCGA-HU-8602-01 1 40309784 40309784 C T TRIT1 Missense_Mutation p.R408H 0.27 tolerated(0.4) benign(0.17) TCGA-HU-8602-01 1 40766816 40766816 C T COL9A2 3'UTR 0.18 TCGA-HU-8602-01 1 43777469 43777469 G A TIE1 Silent p.Q487Q 0.21 TCGA-HU-8602-01 1 44877961 44877961 C T RNF220 Silent p.N64N 0.23 TCGA-HU-8602-01 1 45111136 45111136 C T RNF220 Missense_Mutation p.T474I 0.26 deleterious(0) probably_damaging(0.972) TCGA-HU-8602-01 1 45808309 45808309 G A TOE1 Missense_Mutation p.R249Q 0.24 tolerated(0.05) possibly_damaging(0.861) TCGA-HU-8602-01 1 46120890 46120890 A - GPBP1L1 Frame_Shift_Del p.F54Lfs*53 0.20 TCGA-HU-8602-01 1 46745205 46745205 T C LRRC41 Missense_Mutation p.N701S 0.23 deleterious(0.01) possibly_damaging(0.486) TCGA-HU-8602-01 1 47691535 47691535 G A TAL1 Missense_Mutation p.A9V 0.09 deleterious_low_confidence(0.01) probably_damaging(0.939) TCGA-HU-8602-01 1 52803538 52803538 G A ZFYVE9 Silent p.A1255A 0.16 TCGA-HU-8602-01 1 52881019 52881019 G A PRPF38A Missense_Mutation p.R286H 0.21 deleterious(0.01) unknown(0) TCGA-HU-8602-01 1 53980427 53980428 - G GLIS1 Frame_Shift_Ins p.H410Pfs*2 0.16 TCGA-HU-8602-01 1 54291559 54291559 A - NDC1 Frame_Shift_Del p.F169Sfs*3 0.17 TCGA-HU-8602-01 1 55065021 55065021 C T ACOT11 Nonsense_Mutation p.R273* 0.25 TCGA-HU-8602-01 1 55307333 55307333 G A C1orf177 Intron 0.16 TCGA-HU-8602-01 1 55472881 55472881 G A BSND Missense_Mutation p.V162M 0.34 deleterious(0.01) probably_damaging(0.991) TCGA-HU-8602-01 1 57406539 57406539 C A C8B Missense_Mutation p.A461S 0.17 tolerated(0.12) benign(0.008) TCGA-HU-8602-01 1 6188120 6188120 C T CHD5 Missense_Mutation p.E1297K 0.22 deleterious(0.02) possibly_damaging(0.904) TCGA-HU-8602-01 1 62257034 62257034 T C INADL Silent p.F361F 0.24 TCGA-HU-8602-01 1 6257785 6257785 T - RPL22 Frame_Shift_Del p.K15Rfs*5 0.55 TCGA-HU-8602-01 1 62594546 62594546 C T INADL Missense_Mutation p.P1734S 0.22 tolerated(0.41) possibly_damaging(0.524) TCGA-HU-8602-01 1 62939733 62939733 A - DOCK7 Frame_Shift_Del p.L2014Cfs*32 0.20 TCGA-HU-8602-01 1 65301079 65301079 C A JAK1 Missense_Mutation p.E1123D 0.05 deleterious(0.01) benign(0.043) TCGA-HU-8602-01 1 6534150 6534150 G A PLEKHG5 Silent p.L251L 0.33 TCGA-HU-8602-01 1 67666539 67666539 T C IL23R Missense_Mutation p.M204T 0.24 tolerated(1) benign(0.402) TCGA-HU-8602-01 1 68171151 68171151 T - GNG12 Frame_Shift_Del p.T68Lfs*22 0.21 TCGA-HU-8602-01 1 70509673 70509673 A G LRRC7 Missense_Mutation p.M1298V 0.30 tolerated(0.06) benign(0.354) TCGA-HU-8602-01 1 74648381 74648381 T - LRRIQ3 Frame_Shift_Del p.G139Dfs*20 0.23 TCGA-HU-8602-01 1 74671311 74671311 T - FPGT Frame_Shift_Del p.F528Sfs*7 0.15 TCGA-HU-8602-01 1 77806069 77806069 C - AK5 Frame_Shift_Del p.D238Ifs*18 0.18 TCGA-HU-8602-01 1 79403534 79403534 A C ELTD1 Missense_Mutation p.F240V 0.23 tolerated(0.14) benign(0.141) TCGA-HU-8602-01 1 8422883 8422883 G A RERE Missense_Mutation p.R588W 0.19 probably_damaging(0.998) TCGA-HU-8602-01 1 8482843 8482843 G A RERE Nonsense_Mutation p.Q410* 0.20 TCGA-HU-8602-01 1 85020568 85020568 T - CTBS 3'UTR 0.33 TCGA-HU-8602-01 1 8716109 8716109 T - RERE Frame_Shift_Del p.K83Sfs*12 0.23 TCGA-HU-8602-01 1 879297 879297 C T SAMD11 Missense_Mutation p.R604C 0.06 deleterious(0) probably_damaging(0.998) TCGA-HU-8602-01 1 89206691 89206691 G A PKN2 Silent p.P23P 0.19 TCGA-HU-8602-01 1 89478904 89478905 TA - GBP3 Frame_Shift_Del p.K278Nfs*56 0.19 TCGA-HU-8602-01 1 91406040 91406040 T - ZNF644 Frame_Shift_Del p.R291Efs*7 0.31 TCGA-HU-8602-01 1 94016562 94016562 G T FNBP1L Missense_Mutation p.E570D 0.36 deleterious(0) possibly_damaging(0.886) TCGA-HU-8602-01 1 94458707 94458707 A G ABCA4 3'UTR 0.14 TCGA-HU-8602-01 1 9804642 9804642 T C CLSTN1 Missense_Mutation p.M349V 0.28 tolerated(0.34) benign(0) TCGA-HU-8602-01 1 981392 981392 C T AGRN Missense_Mutation p.A910V 0.23 deleterious(0) possibly_damaging(0.499) TCGA-HU-8602-01 1 99771804 99771804 C T LPPR4 Silent p.P510P 0.20 TCGA-HU-8602-01 20 1115685 1115685 G A PSMF1 Intron 0.21 TCGA-HU-8602-01 20 13260475 13260475 C - ISM1 Frame_Shift_Del p.R194Gfs*82 0.26 TCGA-HU-8602-01 20 13763492 13763492 T - ESF1 Frame_Shift_Del p.T99Pfs*12 0.19 TCGA-HU-8602-01 20 13847354 13847354 A G SEL1L2 Silent p.A466A 0.19 TCGA-HU-8602-01 20 14306860 14306860 T C FLRT3 Silent p.L431L 0.23 TCGA-HU-8602-01 20 16488665 16488665 C A KIF16B Missense_Mutation p.A213S 0.17 tolerated(0.86) probably_damaging(0.999) TCGA-HU-8602-01 20 16729553 16729553 C A OTOR Missense_Mutation p.P53T 0.15 deleterious(0) probably_damaging(0.974) TCGA-HU-8602-01 20 17614161 17614161 G A RRBP1 Missense_Mutation p.R419W 0.23 deleterious(0) possibly_damaging(0.835) TCGA-HU-8602-01 20 18297204 18297204 G A ZNF133 Missense_Mutation p.R569Q 0.24 tolerated(0.08) benign(0.003) TCGA-HU-8602-01 20 18477806 18477806 A C RBBP9 Silent p.A2A 0.31 TCGA-HU-8602-01 20 23016551 23016551 G A SSTR4 Missense_Mutation p.R144H 0.25 deleterious(0) probably_damaging(0.988) TCGA-HU-8602-01 20 23029062 23029062 G A THBD Silent p.G360G 0.30 TCGA-HU-8602-01 20 23346139 23346139 C T GZF1 Silent p.S373S 0.17 TCGA-HU-8602-01 20 23350333 23350333 C T GZF1 Silent p.C580C 0.23 TCGA-HU-8602-01 20 25481580 25481580 G A NINL Missense_Mutation p.R310C 0.34 deleterious(0.04) benign(0.033) TCGA-HU-8602-01 20 3018724 3018724 A G PTPRA Missense_Mutation p.Y785C 0.16 deleterious(0) probably_damaging(1) TCGA-HU-8602-01 20 30408301 30408301 G C MYLK2 Missense_Mutation p.G142A 0.29 tolerated(0.13) benign(0.024) TCGA-HU-8602-01 20 3053040 3053040 G A OXT Silent p.A118A 0.12 TCGA-HU-8602-01 20 30689272 30689272 C T HCK Silent p.L511L 0.27 TCGA-HU-8602-01 20 30789952 30789952 G - PLAGL2 Frame_Shift_Del p.W11Gfs*15 0.23 TCGA-HU-8602-01 20 31021647 31021647 G A ASXL1 Missense_Mutation p.R549H 0.22 deleterious(0.01) probably_damaging(0.997) TCGA-HU-8602-01 20 31946818 31946818 C T CDK5RAP1 3'UTR 0.23 TCGA-HU-8602-01 20 32354674 32354674 C T ZNF341 Missense_Mutation p.P407S 0.27 tolerated(1) benign(0.001) TCGA-HU-8602-01 20 33582119 33582119 C T MYH7B Missense_Mutation p.A914V 0.28 benign(0.124) TCGA-HU-8602-01 20 33589767 33589767 C A MYH7B Missense_Mutation p.T1940N 0.10 benign(0.005) TCGA-HU-8602-01 20 34286424 34286424 A G NFS1 Silent p.D62D 0.27 TCGA-HU-8602-01 20 35060240 35060240 C T DLGAP4 Silent p.F40F 0.26 TCGA-HU-8602-01 20 35128744 35128744 G A DLGAP4 Missense_Mutation p.G745S 0.22 tolerated(0.94) benign(0.032) TCGA-HU-8602-01 20 35288785 35288785 G A NDRG3 Silent p.V271V 0.17 TCGA-HU-8602-01 20 36841554 36841555 - G KIAA1755 Frame_Shift_Ins p.R1165Qfs*25 0.20 TCGA-HU-8602-01 20 36868110 36868110 T C KIAA1755 Missense_Mutation p.K523E 0.16 tolerated(0.43) benign(0.004) TCGA-HU-8602-01 20 37634851 37634851 C T DHX35 Silent p.I358I 0.22 TCGA-HU-8602-01 20 4155695 4155695 C T SMOX 5'UTR 0.21 TCGA-HU-8602-01 20 43109069 43109069 G A TTPAL Missense_Mutation p.V144I 0.28 tolerated(0.56) benign(0.01) TCGA-HU-8602-01 20 43129883 43129883 C T SERINC3 Missense_Mutation p.V372I 0.21 tolerated(0.27) possibly_damaging(0.804) TCGA-HU-8602-01 20 43836312 43836312 G T SEMG1 Missense_Mutation p.R125M 0.11 tolerated(0.18) benign(0.004) TCGA-HU-8602-01 20 44505588 44505588 C T ZSWIM3 Nonsense_Mutation p.Q131* 0.21 TCGA-HU-8602-01 20 45130769 45130769 T - ZNF334 Frame_Shift_Del p.K403Nfs*51 0.17 TCGA-HU-8602-01 20 45618724 45618724 T C EYA2 Silent p.A25A 0.17 TCGA-HU-8602-01 20 45702897 45702897 C T EYA2 Missense_Mutation p.S195L 0.27 deleterious(0.03) possibly_damaging(0.532) TCGA-HU-8602-01 20 45850103 45850103 C T ZMYND8 Silent p.A1047A 0.11 TCGA-HU-8602-01 20 47991404 47991404 G A KCNB1 Silent p.H231H 0.32 TCGA-HU-8602-01 20 52645510 52645510 G A BCAS1 Silent p.V48V 0.20 TCGA-HU-8602-01 20 53260110 53260110 C T DOK5 Silent p.R283R 0.24 TCGA-HU-8602-01 20 55100071 55100071 G C FAM209A Silent p.P69P 0.16 TCGA-HU-8602-01 20 56929305 56929305 A G RAB22A Silent p.E157E 0.24 TCGA-HU-8602-01 20 58514222 58514222 G A PPP1R3D Silent p.F255F 0.16 TCGA-HU-8602-01 20 58514292 58514292 G A PPP1R3D Missense_Mutation p.T232M 0.31 tolerated(0.09) benign(0.015) TCGA-HU-8602-01 20 6025207 6025208 TT - LRRN4 Frame_Shift_Del p.K327Efs*84 0.29 TCGA-HU-8602-01 20 60504830 60504830 C T CDH4 Silent p.G723G 0.25 TCGA-HU-8602-01 20 6096601 6096601 C G FERMT1 Missense_Mutation p.G81A 0.10 deleterious(0.03) probably_damaging(0.999) TCGA-HU-8602-01 20 61471962 61471962 G A COL9A3 Missense_Mutation p.G645R 0.10 deleterious(0) probably_damaging(1) TCGA-HU-8602-01 20 61541334 61541334 T C DIDO1 Missense_Mutation p.H293R 0.22 probably_damaging(1) TCGA-HU-8602-01 20 61870887 61870887 C T BIRC7 Missense_Mutation p.A276V 0.17 deleterious(0) probably_damaging(0.999) TCGA-HU-8602-01 20 62311267 62311267 C T RTEL1 Missense_Mutation p.S392L 0.22 tolerated(0.15) benign(0.163) TCGA-HU-8602-01 20 62366609 62366609 C T ZGPAT Nonsense_Mutation p.Q384* 0.43 TCGA-HU-8602-01 21 15352130 15352130 C G ANKRD20A11P RNA 0.09 TCGA-HU-8602-01 21 22696804 22696804 G A NCAM2 Missense_Mutation p.A241T 0.22 tolerated(1) benign(0.001) TCGA-HU-8602-01 21 30358520 30358521 - TC LTN1 Frame_Shift_Ins p.D141Efs*6 0.15 TCGA-HU-8602-01 21 30433672 30433672 C T CCT8 Missense_Mutation p.A451T 0.22 tolerated(1) benign(0.094) TCGA-HU-8602-01 21 31587549 31587550 - A CLDN8 3'UTR 0.27 TCGA-HU-8602-01 21 31709741 31709741 G A KRTAP27-1 Silent p.P82P 0.22 TCGA-HU-8602-01 21 32492616 32492616 G A TIAM1 3'UTR 0.23 TCGA-HU-8602-01 21 33057745 33057745 A G SCAF4 Silent p.P754P 0.19 TCGA-HU-8602-01 21 33063149 33063149 A - SCAF4 Frame_Shift_Del p.C616Vfs*60 0.21 TCGA-HU-8602-01 21 34793838 34793838 T C IFNGR2 Silent p.C86C 0.19 TCGA-HU-8602-01 21 34927110 34927110 G A SON Missense_Mutation p.R1858H 0.29 unknown(0) TCGA-HU-8602-01 21 35821548 35821548 G T KCNE1 Missense_Mutation p.P129T 0.22 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-HU-8602-01 21 37617519 37617519 C T DOPEY2 Nonsense_Mutation p.R1081* 0.31 TCGA-HU-8602-01 21 37649359 37649359 G A DOPEY2 Silent p.P1891P 0.19 TCGA-HU-8602-01 21 40550521 40550521 C T PSMG1 Missense_Mutation p.R170Q 0.20 tolerated(0.1) probably_damaging(0.924) TCGA-HU-8602-01 21 43246337 43246337 G A PRDM15 Silent p.S902S 0.24 TCGA-HU-8602-01 21 43702466 43702466 G A ABCG1 Missense_Mutation p.R224H 0.22 deleterious(0) probably_damaging(0.999) TCGA-HU-8602-01 21 45379596 45379596 G A AGPAT3 Missense_Mutation p.V12M 0.19 deleterious(0.01) benign(0.043) TCGA-HU-8602-01 21 45657004 45657004 T C ICOSLG Missense_Mutation p.Y51C 0.17 deleterious(0) probably_damaging(0.985) TCGA-HU-8602-01 21 46320286 46320286 G A ITGB2 Silent p.N282N 0.31 TCGA-HU-8602-01 21 47966903 47966903 G A DIP2A Missense_Mutation p.V824I 0.32 tolerated(1) benign(0.034) TCGA-HU-8602-01 22 17662813 17662814 - A CECR1 Frame_Shift_Ins p.G447Wfs*8 0.18 TCGA-HU-8602-01 22 18367052 18367052 G - MICAL3 Intron 0.31 TCGA-HU-8602-01 22 19706100 19706100 C T SEPT5 Intron 0.24 TCGA-HU-8602-01 22 19752522 19752522 C T TBX1 Silent p.H242H 0.26 TCGA-HU-8602-01 22 20386582 20386582 C - PI4KAP1 RNA 0.10 TCGA-HU-8602-01 22 21153546 21153546 G A PI4KA Silent p.P613P 0.19 TCGA-HU-8602-01 22 21350083 21350083 C T LZTR1 Missense_Mutation p.A664V 0.22 tolerated(0.25) benign(0.029) TCGA-HU-8602-01 22 21563126 21563126 G A GGT2 Missense_Mutation p.R466W 0.28 deleterious(0) possibly_damaging(0.884) TCGA-HU-8602-01 22 21800078 21800078 G - HIC2 Frame_Shift_Del p.G300Afs*17 0.13 TCGA-HU-8602-01 22 21800429 21800429 G - HIC2 Frame_Shift_Del p.G417Afs*113 0.28 TCGA-HU-8602-01 22 22892728 22892728 G A PRAME Missense_Mutation p.R125W 0.26 deleterious(0.02) possibly_damaging(0.462) TCGA-HU-8602-01 22 23438485 23438485 C T GNAZ Silent p.D201D 0.21 TCGA-HU-8602-01 22 23981114 23981114 G A GUSBP11 RNA 0.25 TCGA-HU-8602-01 22 24224957 24224957 C T SLC2A11 Silent p.Y302Y 0.27 TCGA-HU-8602-01 22 24896163 24896163 C T UPB1 Nonsense_Mutation p.Q65* 0.22 TCGA-HU-8602-01 22 24953655 24953655 G A SNRPD3 Missense_Mutation p.V5M 0.21 deleterious(0) benign(0.265) TCGA-HU-8602-01 22 26688972 26688972 C - SEZ6L Frame_Shift_Del p.Q234Rfs*9 0.23 TCGA-HU-8602-01 22 29449693 29449693 T A ZNRF3 3'UTR 0.29 TCGA-HU-8602-01 22 29533341 29533341 G A KREMEN1 Missense_Mutation p.A215T 0.23 deleterious(0.05) probably_damaging(0.999) TCGA-HU-8602-01 22 30951994 30951994 T C GAL3ST1 Missense_Mutation p.Q73R 0.20 tolerated(0.52) benign(0.002) TCGA-HU-8602-01 22 31583131 31583132 - G RNF185 Frame_Shift_Ins p.P20Afs*53 0.23 TCGA-HU-8602-01 22 31837925 31837925 C T EIF4ENIF1 Missense_Mutation p.A796T 0.24 deleterious(0.01) benign(0.227) TCGA-HU-8602-01 22 32198810 32198810 G A DEPDC5 Missense_Mutation p.R356Q 0.26 deleterious(0) probably_damaging(0.999) TCGA-HU-8602-01 22 35802621 35802621 C T MCM5 Missense_Mutation p.R167C 0.24 tolerated(0.08) possibly_damaging(0.453) TCGA-HU-8602-01 22 35806781 35806781 T C MCM5 Missense_Mutation p.M266T 0.23 tolerated(0.75) benign(0.005) TCGA-HU-8602-01 22 37769879 37769879 C T ELFN2 Missense_Mutation p.G566S 0.20 tolerated(0.16) benign(0.003) TCGA-HU-8602-01 22 38016834 38016834 G A GGA1 Missense_Mutation p.D148N 0.24 deleterious(0) probably_damaging(0.995) TCGA-HU-8602-01 22 38484859 38484859 G A BAIAP2L2 Silent p.G338G 0.19 TCGA-HU-8602-01 22 38505175 38505175 A G BAIAP2L2 Missense_Mutation p.V31A 0.21 deleterious(0) probably_damaging(0.986) TCGA-HU-8602-01 22 39908332 39908335 CTTA - MIEF1 Frame_Shift_Del p.Y142Tfs*44 0.23 TCGA-HU-8602-01 22 40859226 40859226 C T MKL1 Silent p.P2P 0.22 TCGA-HU-8602-01 22 41077483 41077483 C A MCHR1 Missense_Mutation p.L274I 0.26 tolerated(1) benign(0.015) TCGA-HU-8602-01 22 41738549 41738549 C A ZC3H7B Missense_Mutation p.P405H 0.09 tolerated(0.07) benign(0.087) TCGA-HU-8602-01 22 41751493 41751493 G A ZC3H7B Silent p.G685G 0.29 TCGA-HU-8602-01 22 41753409 41753409 T C ZC3H7B Silent p.A970A 0.21 TCGA-HU-8602-01 22 42024155 42024155 T - XRCC6 Frame_Shift_Del p.L41Wfs*17 0.18 TCGA-HU-8602-01 22 42071182 42071182 T C NHP2L1 Missense_Mutation p.R48G 0.19 deleterious(0.03) possibly_damaging(0.568) TCGA-HU-8602-01 22 42522581 42522581 G A CYP2D6 Missense_Mutation p.R497C 0.22 deleterious(0) probably_damaging(1) TCGA-HU-8602-01 22 42912035 42912035 A - RRP7A Frame_Shift_Del p.H109Ifs*10 0.24 TCGA-HU-8602-01 22 43933296 43933296 C T EFCAB6 Missense_Mutation p.V1337M 0.22 tolerated(0.11) possibly_damaging(0.473) TCGA-HU-8602-01 22 44285694 44285694 G - PNPLA5 Frame_Shift_Del p.E160Sfs*12 0.27 TCGA-HU-8602-01 22 45278961 45278961 C T PHF21B 3'UTR 0.21 TCGA-HU-8602-01 22 46627911 46627911 G A PPARA Missense_Mutation p.G312R 0.25 deleterious(0) probably_damaging(0.998) TCGA-HU-8602-01 22 50301550 50301550 C T ALG12 Missense_Mutation p.G271S 0.27 benign(0.21) TCGA-HU-8602-01 22 50682908 50682908 C T TUBGCP6 5'UTR 0.20 TCGA-HU-8602-01 22 50716655 50716655 C A PLXNB2 Missense_Mutation p.R1593L 0.19 deleterious(0.01) probably_damaging(1) TCGA-HU-8602-01 22 50882364 50882364 A G PPP6R2 Silent p.P857P 0.31 TCGA-HU-8602-01 22 50898756 50898756 G - SBF1 Frame_Shift_Del p.S1077Afs*28 0.21 TCGA-HU-8602-01 22 51020280 51020280 G A CHKB Silent p.S115S 0.24 TCGA-HU-8602-01 22 51133315 51133315 G A SHANK3 Silent p.G381G 0.27 TCGA-HU-8602-01 22 51143260 51143260 C T SHANK3 Silent p.A638A 0.16 TCGA-HU-8602-01 22 51237600 51237600 A - RPL23AP82 RNA 0.10 TCGA-HU-8602-01 2 100055712 100055712 A G REV1 Silent p.S188S 0.12 TCGA-HU-8602-01 2 102984300 102984300 G A IL18R1 Missense_Mutation p.R25H 0.14 deleterious(0.02) possibly_damaging(0.858) TCGA-HU-8602-01 2 103136407 103136407 G A SLC9A4 Missense_Mutation p.R604Q 0.21 deleterious(0) possibly_damaging(0.836) TCGA-HU-8602-01 2 105473227 105473227 C T POU3F3 Missense_Mutation p.A420V 0.28 tolerated(0.17) benign(0.097) TCGA-HU-8602-01 2 109379723 109379723 C - RANBP2 Frame_Shift_Del p.Q911Nfs*89 0.29 TCGA-HU-8602-01 2 109380873 109380873 T - RANBP2 Frame_Shift_Del p.F1294Lfs*12 0.20 TCGA-HU-8602-01 2 109381510 109381510 G A RANBP2 Silent p.P1505P 0.24 TCGA-HU-8602-01 2 109383207 109383207 T C RANBP2 Missense_Mutation p.L2071P 0.16 tolerated(0.06) probably_damaging(0.997) TCGA-HU-8602-01 2 113332867 113332867 C T POLR1B Missense_Mutation p.A990V 0.27 tolerated(0.07) possibly_damaging(0.889) TCGA-HU-8602-01 2 114004377 114004377 G A PAX8 Missense_Mutation p.R49C 0.23 deleterious(0) probably_damaging(0.999) TCGA-HU-8602-01 2 119727888 119727888 G A MARCO Missense_Mutation p.R133Q 0.38 tolerated(0.62) benign(0.022) TCGA-HU-8602-01 2 120020715 120020715 G A STEAP3 Missense_Mutation p.R433H 0.27 tolerated(0.59) benign(0.004) TCGA-HU-8602-01 2 127805941 127805941 C T BIN1 3'UTR 0.50 TCGA-HU-8602-01 2 128366301 128366301 G A MYO7B Missense_Mutation p.A888T 0.25 tolerated(0.25) benign(0.002) TCGA-HU-8602-01 2 128520648 128520648 T A WDR33 Nonsense_Mutation p.R238* 0.23 TCGA-HU-8602-01 2 128757640 128757640 C T SAP130 Silent p.A392A 0.37 TCGA-HU-8602-01 2 130951527 130951527 G A TUBA3E Silent p.F296F 0.16 TCGA-HU-8602-01 2 131130796 131130796 A G PTPN18 Silent p.%3D 0.21 TCGA-HU-8602-01 2 131356243 131356243 C T CFC1 Silent p.P73P 0.11 TCGA-HU-8602-01 2 132237951 132237951 C T TUBA3D Missense_Mutation p.R229C 0.21 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-HU-8602-01 2 133538706 133538706 G A NCKAP5 Silent p.I1656I 0.22 TCGA-HU-8602-01 2 139318408 139318409 - T SPOPL Frame_Shift_Ins p.K252* 0.21 TCGA-HU-8602-01 2 141751585 141751585 C T LRP1B Missense_Mutation p.D875N 0.19 probably_damaging(0.962) TCGA-HU-8602-01 2 1418179 1418179 G T TPO Splice_Site 0.22 TCGA-HU-8602-01 2 152394412 152394412 G A NEB Nonsense_Mutation p.R7026* 0.24 TCGA-HU-8602-01 2 152410393 152410393 G - NEB Frame_Shift_Del p.D6526Tfs*27 0.18 TCGA-HU-8602-01 2 152732944 152732944 C T CACNB4 Missense_Mutation p.G173R 0.17 tolerated(0.08) probably_damaging(0.925) TCGA-HU-8602-01 2 15415814 15415814 T C NBAS Missense_Mutation p.M1840V 0.29 tolerated(0.3) benign(0.055) TCGA-HU-8602-01 2 1546296 1546296 C T TPO 3'UTR 0.30 TCGA-HU-8602-01 2 15601418 15601418 C T NBAS Missense_Mutation p.G749D 0.21 deleterious(0) probably_damaging(0.997) TCGA-HU-8602-01 2 158395174 158395174 G A ACVR1C Missense_Mutation p.P423S 0.12 deleterious(0.04) probably_damaging(0.998) TCGA-HU-8602-01 2 158980303 158980303 A - UPP2 Frame_Shift_Del p.K295Sfs*2 0.34 TCGA-HU-8602-01 2 160032860 160032860 T C TANC1 Intron 0.18 TCGA-HU-8602-01 2 161052032 161052032 G A ITGB6 Silent p.D147D 0.20 TCGA-HU-8602-01 2 166536156 166536156 A G CSRNP3 Missense_Mutation p.S551G 0.19 tolerated_low_confidence(0.55) benign(0.003) TCGA-HU-8602-01 2 168101881 168101881 C T XIRP2 Nonsense_Mutation p.R1327* 0.19 TCGA-HU-8602-01 2 168102837 168102837 T C XIRP2 Silent p.T1645T 0.24 TCGA-HU-8602-01 2 168106361 168106361 A - XIRP2 Frame_Shift_Del p.N2822Ifs*6 0.18 TCGA-HU-8602-01 2 171822431 171822431 C T GORASP2 Silent p.L384L 0.21 TCGA-HU-8602-01 2 173335733 173335733 T - ITGA6 Frame_Shift_Del p.F227Lfs*3 0.18 TCGA-HU-8602-01 2 176794611 176794611 A - KIAA1715 3'UTR 0.18 TCGA-HU-8602-01 2 176857133 176857133 A G KIAA1715 Missense_Mutation p.L28S 0.26 deleterious(0) probably_damaging(0.992) TCGA-HU-8602-01 2 17698684 17698684 T C RAD51AP2 Silent p.S333S 0.16 TCGA-HU-8602-01 2 17698737 17698737 T - RAD51AP2 Frame_Shift_Del p.T316Lfs*2 0.20 TCGA-HU-8602-01 2 177017752 177017752 C T HOXD3 5'UTR 0.11 TCGA-HU-8602-01 2 177053568 177053568 C T HOXD1 Silent p.S13S 0.32 TCGA-HU-8602-01 2 179214012 179214012 C T OSBPL6 Missense_Mutation p.A375V 0.19 tolerated(0.19) benign(0.011) TCGA-HU-8602-01 2 179409151 179409151 G A TTN Silent p.Y31935Y 0.18 TCGA-HU-8602-01 2 179410269 179410269 A C TTN Silent p.R31856R 0.19 TCGA-HU-8602-01 2 179410765 179410765 T C TTN Missense_Mutation p.Q31733R 0.16 TCGA-HU-8602-01 2 179413514 179413514 T C TTN Missense_Mutation p.I30947V 0.22 TCGA-HU-8602-01 2 179414065 179414069 CTTTT - TTN Frame_Shift_Del p.K30762Hfs*14 0.19 TCGA-HU-8602-01 2 179414314 179414314 A G TTN Missense_Mutation p.V30712A 0.15 TCGA-HU-8602-01 2 179433561 179433561 T C TTN Silent p.E25766E 0.24 TCGA-HU-8602-01 2 179466820 179466820 C T TTN Missense_Mutation p.G18393D 0.23 TCGA-HU-8602-01 2 179528765 179528765 T - TTN Frame_Shift_Del p.K12114Sfs*44 0.19 TCGA-HU-8602-01 2 179566903 179566903 G A TTN Missense_Mutation p.T10168M 0.28 TCGA-HU-8602-01 2 179650794 179650794 G T TTN Silent p.P717P 0.20 TCGA-HU-8602-01 2 179666974 179666974 G A TTN Silent p.R62R 0.23 TCGA-HU-8602-01 2 179734013 179734013 T C CCDC141 Missense_Mutation p.Q742R 0.21 deleterious(0.03) benign(0.007) TCGA-HU-8602-01 2 182322503 182322503 C T ITGA4 Missense_Mutation p.A41V 0.22 deleterious(0.01) possibly_damaging(0.479) TCGA-HU-8602-01 2 182360664 182360664 G T ITGA4 Missense_Mutation p.V514F 0.12 deleterious(0.03) probably_damaging(0.943) TCGA-HU-8602-01 2 183989101 183989101 G A NUP35 5'UTR 0.23 TCGA-HU-8602-01 2 185802533 185802533 G A ZNF804A Missense_Mutation p.A804T 0.14 tolerated(0.73) benign(0.187) TCGA-HU-8602-01 2 186673253 186673253 A G FSIP2 Missense_Mutation p.E6496G 0.20 benign(0.009) TCGA-HU-8602-01 2 187523819 187523819 C T ITGAV Missense_Mutation p.R592W 0.21 deleterious(0.02) benign(0.009) TCGA-HU-8602-01 2 1890322 1890322 G T MYT1L Silent p.S898S 0.10 TCGA-HU-8602-01 2 189348173 189348173 A G GULP1 Missense_Mutation p.H15R 0.27 deleterious(0) benign(0.265) TCGA-HU-8602-01 2 190430308 190430308 G A SLC40A1 Nonsense_Mutation p.R178* 0.14 TCGA-HU-8602-01 2 192700907 192700907 C T SDPR Silent p.A340A 0.20 TCGA-HU-8602-01 2 192711619 192711619 G A SDPR Silent p.F11F 0.23 TCGA-HU-8602-01 2 19552979 19552979 C T OSR1 Silent p.T196T 0.20 TCGA-HU-8602-01 2 197597197 197597197 T C CCDC150 Missense_Mutation p.S1073P 0.19 tolerated(0.45) benign(0.004) TCGA-HU-8602-01 2 197672223 197672223 C T C2orf66 Missense_Mutation p.A100T 0.30 deleterious(0.03) probably_damaging(0.996) TCGA-HU-8602-01 2 197860118 197860118 T - ANKRD44 Frame_Shift_Del p.N914Ifs*11 0.17 TCGA-HU-8602-01 2 198498533 198498533 G A RFTN2 Silent p.S209S 0.24 TCGA-HU-8602-01 2 201846041 201846041 C T FAM126B Silent p.K515K 0.27 TCGA-HU-8602-01 2 202149961 202149962 TG - CASP8 Frame_Shift_Del p.V469Ffs*28 0.21 TCGA-HU-8602-01 2 204267367 204267367 T A ABI2 Missense_Mutation p.S301T 0.16 tolerated(0.33) benign(0.098) TCGA-HU-8602-01 2 207169506 207169506 C A ZDBF2 Missense_Mutation p.A85D 0.22 tolerated(0.21) benign(0) TCGA-HU-8602-01 2 207174428 207174428 A - ZDBF2 Frame_Shift_Del p.K1728Nfs*5 0.30 TCGA-HU-8602-01 2 207436508 207436508 G A ADAM23 Missense_Mutation p.D542N 0.38 tolerated(0.47) benign(0.218) TCGA-HU-8602-01 2 209308074 209308074 C T PTH2R Nonsense_Mutation p.R171* 0.19 TCGA-HU-8602-01 2 214727284 214727284 A - SPAG16 Frame_Shift_Del p.K383Nfs*48 0.23 TCGA-HU-8602-01 2 215279080 215279080 G A VWC2L Missense_Mutation p.D55N 0.20 tolerated(0.07) probably_damaging(0.982) TCGA-HU-8602-01 2 215843555 215843555 G A ABCA12 Silent p.Y1650Y 0.20 TCGA-HU-8602-01 2 215914421 215914422 - A ABCA12 Frame_Shift_Ins p.N208* 0.19 TCGA-HU-8602-01 2 217280119 217280119 A - SMARCAL1 Frame_Shift_Del p.G233Efs*2 0.20 TCGA-HU-8602-01 2 218713378 218713378 C T TNS1 Missense_Mutation p.R496Q 0.23 deleterious(0) probably_damaging(0.997) TCGA-HU-8602-01 2 219209550 219209550 A G PNKD Missense_Mutation p.E335G 0.27 deleterious(0.01) probably_damaging(0.948) TCGA-HU-8602-01 2 219251369 219251369 C T SLC11A1 Silent p.T135T 0.10 TCGA-HU-8602-01 2 219295597 219295597 C T VIL1 Silent p.S366S 0.32 TCGA-HU-8602-01 2 219509452 219509452 T C ZNF142 Missense_Mutation p.H596R 0.18 deleterious(0) benign(0.227) TCGA-HU-8602-01 2 219868992 219868992 G A CCDC108 Missense_Mutation p.P1746L 0.26 tolerated(0.41) benign(0.001) TCGA-HU-8602-01 2 220326765 220326765 C - SPEG Frame_Shift_Del p.T870Pfs*11 0.22 TCGA-HU-8602-01 2 220397620 220397620 G A ASIC4 Intron 0.39 TCGA-HU-8602-01 2 220416499 220416499 C T OBSL1 Missense_Mutation p.R1812H 0.24 deleterious(0.01) probably_damaging(0.993) TCGA-HU-8602-01 2 220432923 220432923 C T OBSL1 Missense_Mutation p.R379Q 0.16 deleterious(0.02) possibly_damaging(0.752) TCGA-HU-8602-01 2 225638013 225638013 G A DOCK10 Missense_Mutation p.S2022L 0.21 tolerated(0.13) benign(0.023) TCGA-HU-8602-01 2 228846310 228846310 T - SPHKAP 3'UTR 0.32 TCGA-HU-8602-01 2 230632174 230632174 G A TRIP12 3'UTR 0.21 TCGA-HU-8602-01 2 231120198 231120198 T C SP140 Silent p.D397D 0.22 TCGA-HU-8602-01 2 234365952 234365952 G - DGKD Frame_Shift_Del p.G855Vfs*48 0.24 TCGA-HU-8602-01 2 238881748 238881748 T C UBE2F 5'UTR 0.25 TCGA-HU-8602-01 2 240066299 240066299 T - HDAC4 Frame_Shift_Del p.K282Sfs*116 0.23 TCGA-HU-8602-01 2 240078381 240078381 C T HDAC4 Missense_Mutation p.D234N 0.19 tolerated(0.1) benign(0.081) TCGA-HU-8602-01 2 240984767 240984767 G A OR6B3 Silent p.C241C 0.27 TCGA-HU-8602-01 2 242047655 242047655 A G PASK Silent p.F1205F 0.17 TCGA-HU-8602-01 2 242128052 242128052 C T ANO7 Missense_Mutation p.A9V 0.21 deleterious_low_confidence(0.01) benign(0.042) TCGA-HU-8602-01 2 24991211 24991211 C - NCOA1 Frame_Shift_Del p.Q1428Rfs*12 0.19 TCGA-HU-8602-01 2 26671649 26671649 T C DRC1 Missense_Mutation p.L496P 0.15 deleterious(0) probably_damaging(0.998) TCGA-HU-8602-01 2 26683839 26683839 T C OTOF Missense_Mutation p.T1865A 0.29 tolerated(0.07) benign(0.024) TCGA-HU-8602-01 2 26693574 26693574 C T OTOF Missense_Mutation p.E1304K 0.17 tolerated(1) benign(0.002) TCGA-HU-8602-01 2 26696067 26696067 G A OTOF Silent p.A1222A 0.27 TCGA-HU-8602-01 2 27361028 27361028 C T C2orf53 Missense_Mutation p.R57H 0.09 tolerated(0.61) benign(0) TCGA-HU-8602-01 2 27459279 27459279 G T CAD Missense_Mutation p.G1401V 0.21 deleterious(0.03) probably_damaging(0.976) TCGA-HU-8602-01 2 27530432 27530432 C T UCN Missense_Mutation p.R111H 0.25 deleterious(0) probably_damaging(0.998) TCGA-HU-8602-01 2 27684208 27684208 C A IFT172 Missense_Mutation p.E790D 0.23 tolerated(0.6) benign(0.003) TCGA-HU-8602-01 2 29052084 29052084 A - SPDYA Frame_Shift_Del p.N152Tfs*10 0.24 TCGA-HU-8602-01 2 29366647 29366647 G A CLIP4 Missense_Mutation p.A241T 0.27 tolerated(0.06) probably_damaging(0.999) TCGA-HU-8602-01 2 31215790 31215790 G A GALNT14 Intron 0.27 TCGA-HU-8602-01 2 32750591 32750591 G - BIRC6 Frame_Shift_Del p.R3941Gfs*7 0.10 TCGA-HU-8602-01 2 3691067 3691067 C A COLEC11 Missense_Mutation p.A135D 0.18 deleterious(0.01) possibly_damaging(0.791) TCGA-HU-8602-01 2 37008909 37008909 A G VIT Missense_Mutation p.D281G 0.06 tolerated(0.18) benign(0.001) TCGA-HU-8602-01 2 37450518 37450518 G A CEBPZ Missense_Mutation p.T559M 0.28 tolerated(0.39) benign(0.017) TCGA-HU-8602-01 2 42990002 42990002 C T OXER1 3'UTR 0.26 TCGA-HU-8602-01 2 44539884 44539884 T C SLC3A1 Missense_Mutation p.Y498H 0.23 tolerated(0.25) benign(0.035) TCGA-HU-8602-01 2 46611727 46611727 C T EPAS1 Silent p.N847N 0.25 TCGA-HU-8602-01 2 46808174 46808174 A - RHOQ Frame_Shift_Del p.R193Efs*2 0.28 TCGA-HU-8602-01 2 48050427 48050427 T C FBXO11 Missense_Mutation p.T491A 0.24 tolerated(0.06) probably_damaging(0.998) TCGA-HU-8602-01 2 48602092 48602092 A - FOXN2 Frame_Shift_Del p.K271Rfs*22 0.20 TCGA-HU-8602-01 2 48701860 48701860 C T PPP1R21 Missense_Mutation p.A376V 0.16 tolerated(0.32) possibly_damaging(0.698) TCGA-HU-8602-01 2 54127128 54127128 C T PSME4 Silent p.A1104A 0.20 TCGA-HU-8602-01 2 54150493 54150493 G A PSME4 Missense_Mutation p.R625C 0.17 deleterious(0) possibly_damaging(0.676) TCGA-HU-8602-01 2 61118941 61118941 G A REL Missense_Mutation p.R45Q 0.32 deleterious(0) probably_damaging(0.999) TCGA-HU-8602-01 2 66796091 66796091 A G MEIS1 Intron 0.30 TCGA-HU-8602-01 2 68882559 68882559 G A PROKR1 Missense_Mutation p.V345I 0.26 tolerated(0.06) benign(0.006) TCGA-HU-8602-01 2 70923451 70923451 G A ADD2 Missense_Mutation p.R134W 0.14 deleterious(0) probably_damaging(0.999) TCGA-HU-8602-01 2 73868563 73868563 C T NAT8 Missense_Mutation p.V65M 0.05 tolerated(0.57) benign(0.006) TCGA-HU-8602-01 2 74725186 74725186 G C LBX2 Silent p.R151R 0.19 TCGA-HU-8602-01 2 74777345 74777345 G C LOXL3 Silent p.R148R 0.19 TCGA-HU-8602-01 2 75929286 75929286 A - GCFC2 Intron 0.21 TCGA-HU-8602-01 2 80101333 80101333 C T CTNNA2 Silent p.N239N 0.16 TCGA-HU-8602-01 2 80801404 80801404 G A CTNNA2 Missense_Mutation p.V620I 0.31 tolerated(0.41) benign(0.048) TCGA-HU-8602-01 2 84517914 84517914 G A FUNDC2P2 RNA 0.43 TCGA-HU-8602-01 2 95539209 95539209 C T TEKT4 Intron 0.25 TCGA-HU-8602-01 2 95952569 95952569 C T PROM2 Silent p.S686S 0.11 TCGA-HU-8602-01 2 96265427 96265427 A C TRIM43 3'UTR 0.23 TCGA-HU-8602-01 2 96936850 96936850 T C CIAO1 Missense_Mutation p.C261R 0.25 deleterious(0.03) probably_damaging(0.996) TCGA-HU-8602-01 2 98409017 98409017 G - TMEM131 Frame_Shift_Del p.L1326Sfs*26 0.29 TCGA-HU-8602-01 2 99241955 99241956 - A MGAT4A 3'UTR 0.26 TCGA-HU-8602-01 2 99976805 99976805 A - EIF5B Frame_Shift_Del p.K50Sfs*10 0.36 TCGA-HU-8602-01 2 99977878 99977878 A - EIF5B Frame_Shift_Del p.I174Lfs*7 0.28 TCGA-HU-8602-01 3 100949925 100949925 C T IMPG2 Missense_Mutation p.V1100M 0.18 deleterious(0.01) benign(0.001) TCGA-HU-8602-01 3 101484459 101484459 T - CEP97 3'UTR 0.33 TCGA-HU-8602-01 3 105422838 105422838 T C CBLB Silent p.S529S 0.22 TCGA-HU-8602-01 3 108818240 108818240 A - MORC1 Frame_Shift_Del p.S130Lfs*14 0.13 TCGA-HU-8602-01 3 112732150 112732150 G A C3orf17 Missense_Mutation p.R148C 0.25 deleterious(0) probably_damaging(1) TCGA-HU-8602-01 3 113005756 113005756 A T BOC 3'UTR 0.26 TCGA-HU-8602-01 3 113118803 113118803 G A WDR52 Nonsense_Mutation p.Q507* 0.20 TCGA-HU-8602-01 3 113658739 113658739 G A GRAMD1C Silent p.L566L 0.13 TCGA-HU-8602-01 3 118909885 118909885 T G UPK1B Silent p.P134P 0.22 TCGA-HU-8602-01 3 119263411 119263411 G A CD80 Missense_Mutation p.T135M 0.28 tolerated(0.32) benign(0.002) TCGA-HU-8602-01 3 121341781 121341781 G A FBXO40 Missense_Mutation p.C502Y 0.23 deleterious(0.01) possibly_damaging(0.694) TCGA-HU-8602-01 3 121410577 121410577 A G GOLGB1 Missense_Mutation p.L2545P 0.16 probably_damaging(1) TCGA-HU-8602-01 3 121828183 121828183 T C CD86 Missense_Mutation p.C259R 0.24 tolerated(0.1) benign(0.332) TCGA-HU-8602-01 3 121980770 121980770 C T CASR Silent p.S296S 0.25 TCGA-HU-8602-01 3 122631808 122631808 G A SEMA5B Silent p.C923C 0.35 TCGA-HU-8602-01 3 122942522 122942522 T C SEC22A Missense_Mutation p.M100T 0.17 tolerated(1) benign(0) TCGA-HU-8602-01 3 123376260 123376260 G - MYLK Frame_Shift_Del p.P1334Qfs*15 0.21 TCGA-HU-8602-01 3 127816210 127816210 G A RUVBL1 Missense_Mutation p.R317C 0.12 deleterious(0) benign(0.417) TCGA-HU-8602-01 3 127816299 127816299 A G RUVBL1 Missense_Mutation p.I287T 0.18 deleterious(0) benign(0.054) TCGA-HU-8602-01 3 12859303 12859303 G A CAND2 Missense_Mutation p.E958K 0.06 deleterious(0.04) probably_damaging(0.995) TCGA-HU-8602-01 3 12872989 12872989 G A CAND2 Missense_Mutation p.R1134Q 0.26 deleterious(0) probably_damaging(0.999) TCGA-HU-8602-01 3 129278498 129278498 G A PLXND1 Silent p.S1754S 0.29 TCGA-HU-8602-01 3 129373844 129373844 C T TMCC1 Silent p.A538A 0.17 TCGA-HU-8602-01 3 130159284 130159284 T G COL6A5 Silent p.T2034T 0.16 TCGA-HU-8602-01 3 133494278 133494278 A - TF Frame_Shift_Del p.N565Tfs*9 0.21 TCGA-HU-8602-01 3 13407579 13407579 G - NUP210 Frame_Shift_Del p.P600Qfs*11 0.17 TCGA-HU-8602-01 3 137811279 137811279 T - DZIP1L Frame_Shift_Del p.K272Nfs*17 0.20 TCGA-HU-8602-01 3 139173633 139173634 - CA RBP2 Frame_Shift_Ins p.Q98Cfs*24 0.22 TCGA-HU-8602-01 3 140277498 140277498 G A CLSTN2 Missense_Mutation p.V614I 0.21 tolerated(0.07) benign(0.006) TCGA-HU-8602-01 3 140785500 140785500 A C SPSB4 Missense_Mutation p.E185A 0.14 deleterious(0) benign(0.333) TCGA-HU-8602-01 3 141011448 141011448 G A ACPL2 Missense_Mutation p.V282M 0.26 deleterious(0.02) possibly_damaging(0.797) TCGA-HU-8602-01 3 141526518 141526518 T C GRK7 Missense_Mutation p.I361T 0.29 deleterious(0) probably_damaging(0.969) TCGA-HU-8602-01 3 142030643 142030643 T - XRN1 Frame_Shift_Del p.R1611Gfs*34 0.16 TCGA-HU-8602-01 3 142840276 142840276 G - CHST2 Frame_Shift_Del p.D208Tfs*13 0.23 TCGA-HU-8602-01 3 142840728 142840728 G A CHST2 Missense_Mutation p.R357H 0.20 deleterious(0) probably_damaging(0.997) TCGA-HU-8602-01 3 1444070 1444070 T A CNTN6 Silent p.L962L 0.27 TCGA-HU-8602-01 3 147128224 147128224 G A ZIC1 Missense_Mutation p.D109N 0.20 tolerated(0.13) benign(0.333) TCGA-HU-8602-01 3 148904461 148904461 C T CP Silent p.S641S 0.30 TCGA-HU-8602-01 3 148939579 148939579 T - CP Frame_Shift_Del p.M1? 0.20 TCGA-HU-8602-01 3 150176503 150176503 G A TSC22D2 3'UTR 0.32 TCGA-HU-8602-01 3 151154496 151154496 G A IGSF10 Missense_Mutation p.T2618M 0.24 deleterious(0) probably_damaging(0.994) TCGA-HU-8602-01 3 155301352 155301352 C T PLCH1 Missense_Mutation p.R215Q 0.25 deleterious(0.02) probably_damaging(0.999) TCGA-HU-8602-01 3 157823674 157823674 C T SHOX2 Missense_Mutation p.G47D 0.28 tolerated_low_confidence(0.22) possibly_damaging(0.702) TCGA-HU-8602-01 3 160803529 160803529 T - B3GALNT1 3'UTR 0.19 TCGA-HU-8602-01 3 164709251 164709251 G A SI Silent p.G1666G 0.25 TCGA-HU-8602-01 3 164906063 164906063 T C SLITRK3 Silent p.G852G 0.22 TCGA-HU-8602-01 3 167000177 167000177 A G ZBBX Silent p.A701A 0.19 TCGA-HU-8602-01 3 167246889 167246889 T C WDR49 Missense_Mutation p.Y434C 0.25 deleterious(0.01) benign(0.088) TCGA-HU-8602-01 3 167507159 167507159 A - SERPINI1 Frame_Shift_Del p.N83Mfs*8 0.19 TCGA-HU-8602-01 3 169546704 169546704 A G LRRIQ4 Missense_Mutation p.H393R 0.20 tolerated(0.19) benign(0.028) TCGA-HU-8602-01 3 170625432 170625432 T C EIF5A2 Missense_Mutation p.K55R 0.23 deleterious(0) probably_damaging(0.951) TCGA-HU-8602-01 3 172070675 172070676 CT - FNDC3B Frame_Shift_Del p.V869Pfs*7 0.19 TCGA-HU-8602-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.23 tolerated(0.11) possibly_damaging(0.529) TCGA-HU-8602-01 3 180669105 180669105 C T FXR1 Missense_Mutation p.A217V 0.15 deleterious(0.03) benign(0.388) TCGA-HU-8602-01 3 182631688 182631688 A G ATP11B Missense_Mutation p.M1120V 0.26 tolerated_low_confidence(0.33) benign(0) TCGA-HU-8602-01 3 182679028 182679028 C T DCUN1D1 Missense_Mutation p.G169E 0.20 tolerated(0.07) benign(0.272) TCGA-HU-8602-01 3 183858374 183858374 T C EIF2B5 Missense_Mutation p.S338P 0.28 deleterious(0.02) benign(0.396) TCGA-HU-8602-01 3 184062596 184062596 C A FAM131A Silent p.S313S 0.27 TCGA-HU-8602-01 3 184093704 184093704 C T THPO Missense_Mutation p.R38H 0.15 deleterious(0) probably_damaging(0.999) TCGA-HU-8602-01 3 184971692 184971692 T C EHHADH Intron 0.27 TCGA-HU-8602-01 3 185252860 185252860 G A LIPH Missense_Mutation p.T37M 0.28 deleterious(0) probably_damaging(1) TCGA-HU-8602-01 3 186839106 186839106 A G RPL39L 5'UTR 0.33 TCGA-HU-8602-01 3 186917853 186917853 G A RTP1 Missense_Mutation p.V263I 0.22 tolerated_low_confidence(0.14) benign(0.002) TCGA-HU-8602-01 3 187416493 187416493 G T RTP2 Silent p.A157A 0.09 TCGA-HU-8602-01 3 188327440 188327441 - G LPP Frame_Shift_Ins p.R310Qfs*3 0.20 TCGA-HU-8602-01 3 19295379 19295379 G A KCNH8 Missense_Mutation p.G104R 0.22 deleterious(0.01) benign(0.099) TCGA-HU-8602-01 3 194080099 194080099 G A LRRC15 Silent p.C564C 0.24 TCGA-HU-8602-01 3 194407692 194407692 C T FAM43A Missense_Mutation p.A46V 0.18 deleterious(0.01) probably_damaging(0.994) TCGA-HU-8602-01 3 195516403 195516403 G A MUC4 Missense_Mutation p.P683L 0.21 unknown(0) TCGA-HU-8602-01 3 195595140 195595140 C T TNK2 Missense_Mutation p.G740R 0.14 deleterious_low_confidence(0.02) benign(0.375) TCGA-HU-8602-01 3 20194018 20194018 T - KAT2B 3'UTR 0.25 TCGA-HU-8602-01 3 21478596 21478597 - T ZNF385D Frame_Shift_Ins p.S180Kfs*9 0.13 TCGA-HU-8602-01 3 3192684 3192684 A G CRBN Silent p.I398I 0.20 TCGA-HU-8602-01 3 36873742 36873742 T C TRANK1 Silent p.P2400P 0.22 TCGA-HU-8602-01 3 38080825 38080825 A G DLEC1 Missense_Mutation p.S37G 0.11 tolerated_low_confidence(0.06) benign(0.08) TCGA-HU-8602-01 3 382479 382479 G A CHL1 Missense_Mutation p.V130I 0.23 tolerated(0.36) benign(0.015) TCGA-HU-8602-01 3 38913774 38913774 G A SCN11A Silent p.T1135T 0.31 TCGA-HU-8602-01 3 39177852 39177852 T - TTC21A Frame_Shift_Del p.L992Wfs*6 0.30 TCGA-HU-8602-01 3 39226759 39226759 C T XIRP1 Missense_Mutation p.G1393E 0.15 tolerated_low_confidence(0.31) benign(0.005) TCGA-HU-8602-01 3 39227402 39227402 G A XIRP1 Missense_Mutation p.R1179C 0.39 deleterious(0.01) benign(0.183) TCGA-HU-8602-01 3 39229837 39229837 G A XIRP1 Missense_Mutation p.A367V 0.21 tolerated(0.39) benign(0.005) TCGA-HU-8602-01 3 39374056 39374056 C A CCR8 Silent p.A78A 0.27 TCGA-HU-8602-01 3 41266654 41266654 C T CTNNB1 Missense_Mutation p.R151C 0.18 deleterious(0) possibly_damaging(0.745) TCGA-HU-8602-01 3 41275088 41275088 C A CTNNB1 Silent p.T418T 0.19 TCGA-HU-8602-01 3 42735237 42735237 C T HHATL Missense_Mutation p.A374T 0.21 tolerated(0.22) benign(0.206) TCGA-HU-8602-01 3 44489074 44489074 C T ZNF445 Missense_Mutation p.V697I 0.29 tolerated(1) unknown(0) TCGA-HU-8602-01 3 44497093 44497093 C T ZNF445 5'UTR 0.18 TCGA-HU-8602-01 3 44763989 44763989 C T ZNF502 3'UTR 0.24 TCGA-HU-8602-01 3 46484979 46484979 G A LTF Silent p.C536C 0.21 TCGA-HU-8602-01 3 46560368 46560368 T - LRRC2 3'UTR 0.41 TCGA-HU-8602-01 3 47458613 47458613 T - SCAP Frame_Shift_Del p.R1019Gfs*52 0.19 TCGA-HU-8602-01 3 47888257 47888257 C T DHX30 Silent p.D565D 0.22 TCGA-HU-8602-01 3 48207221 48207221 C T CDC25A Missense_Mutation p.A366T 0.26 deleterious(0.02) benign(0.045) TCGA-HU-8602-01 3 48455317 48455318 AA - PLXNB1 Frame_Shift_Del p.L1458Afs*2 0.25 TCGA-HU-8602-01 3 48505450 48505451 - CTG ATRIP In_Frame_Ins p.L635dup 0.16 TCGA-HU-8602-01 3 48612878 48612878 C - COL7A1 Frame_Shift_Del p.G2025Afs*181 0.16 TCGA-HU-8602-01 3 48629340 48629340 G A COL7A1 Missense_Mutation p.R450C 0.17 unknown(0) TCGA-HU-8602-01 3 48630626 48630626 G A COL7A1 Silent p.F197F 0.29 TCGA-HU-8602-01 3 48659143 48659143 G A TMEM89 Missense_Mutation p.T16M 0.16 tolerated_low_confidence(1) unknown(0) TCGA-HU-8602-01 3 48668546 48668546 G A SLC26A6 Silent p.T338T 0.24 TCGA-HU-8602-01 3 48669116 48669116 T A SLC26A6 Missense_Mutation p.Q290L 0.27 deleterious(0.01) benign(0.103) TCGA-HU-8602-01 3 48696563 48696563 G A CELSR3 Missense_Mutation p.L1169F 0.29 deleterious(0.01) probably_damaging(0.964) TCGA-HU-8602-01 3 48725646 48725646 C T IP6K2 3'UTR 0.15 TCGA-HU-8602-01 3 49152280 49152280 C T USP19 Silent p.R734R 0.28 TCGA-HU-8602-01 3 49159654 49159654 G A LAMB2 Missense_Mutation p.R1575C 0.24 deleterious(0.02) possibly_damaging(0.677) TCGA-HU-8602-01 3 49935593 49935593 C A MST1R Missense_Mutation p.G591C 0.13 deleterious(0) probably_damaging(1) TCGA-HU-8602-01 3 50329947 50329947 T C IFRD2 5'Flank 0.21 TCGA-HU-8602-01 3 50355829 50355829 T C HYAL2 Missense_Mutation p.T385A 0.26 tolerated(0.65) benign(0.001) TCGA-HU-8602-01 3 51417604 51417604 C - DOCK3 Frame_Shift_Del p.P1852Qfs*45 0.26 TCGA-HU-8602-01 3 51733580 51733580 G T TEX264 Silent p.V213V 0.19 TCGA-HU-8602-01 3 52417962 52417962 C T DNAH1 Missense_Mutation p.P2746L 0.24 probably_damaging(1) TCGA-HU-8602-01 3 52529484 52529484 G T STAB1 Missense_Mutation p.G19C 0.23 tolerated(0.11) unknown(0) TCGA-HU-8602-01 3 52623161 52623161 C T PBRM1 Missense_Mutation p.V964I 0.24 deleterious(0.04) benign(0.208) TCGA-HU-8602-01 3 52861147 52861147 G A ITIH4 Silent p.S106S 0.10 TCGA-HU-8602-01 3 52945125 52945125 G A SFMBT1 Silent p.C600C 0.29 TCGA-HU-8602-01 3 53835443 53835443 G C CACNA1D Missense_Mutation p.S1820T 0.25 tolerated_low_confidence(0.18) benign(0.03) TCGA-HU-8602-01 3 53890903 53890905 AAG - IL17RB In_Frame_Del p.K189del 0.27 TCGA-HU-8602-01 3 57543207 57543207 C A PDE12 Silent p.A367A 0.28 TCGA-HU-8602-01 3 61975362 61975362 C A PTPRG Missense_Mutation p.P85H 0.07 deleterious(0) probably_damaging(0.981) TCGA-HU-8602-01 3 62385187 62385187 C T CADPS Missense_Mutation p.R1319Q 0.15 tolerated(0.33) benign(0.238) TCGA-HU-8602-01 3 71804132 71804132 G A GPR27 Missense_Mutation p.R311Q 0.26 tolerated(0.32) benign(0.117) TCGA-HU-8602-01 3 85775638 85775638 G T CADM2 Missense_Mutation p.V3F 0.22 tolerated(0.24) benign(0.001) TCGA-HU-8602-01 3 8579008 8579008 G A LMCD1 Missense_Mutation p.G90D 0.22 deleterious(0) probably_damaging(0.997) TCGA-HU-8602-01 3 88041033 88041033 T - HTR1F 3'UTR 0.21 TCGA-HU-8602-01 3 8809681 8809681 G A OXTR Missense_Mutation p.R65C 0.33 tolerated(0.13) benign(0.013) TCGA-HU-8602-01 3 93603719 93603719 A G PROS1 Missense_Mutation p.C449R 0.25 deleterious(0) probably_damaging(1) TCGA-HU-8602-01 3 98538224 98538224 G A DCBLD2 Silent p.I303I 0.25 TCGA-HU-8602-01 3 99513596 99513597 - C COL8A1 Frame_Shift_Ins p.L286Pfs*76 0.14 TCGA-HU-8602-01 4 103832695 103832695 C A SLC9B1 Splice_Site p.X277_splice 0.18 TCGA-HU-8602-01 4 104640840 104640840 G A TACR3 5'UTR 0.23 TCGA-HU-8602-01 4 110223028 110223028 G T COL25A1 Missense_Mutation p.L50M 0.20 tolerated(0.09) benign(0.184) TCGA-HU-8602-01 4 111539685 111539685 G T PITX2 Missense_Mutation p.L191I 0.19 deleterious(0.03) probably_damaging(0.93) TCGA-HU-8602-01 4 113524697 113524697 G A C4orf21 Nonsense_Mutation p.Q987* 0.28 TCGA-HU-8602-01 4 114274959 114274959 A - ANK2 Frame_Shift_Del p.G1731Vfs*7 0.21 TCGA-HU-8602-01 4 114275426 114275426 G A ANK2 Silent p.S1884S 0.23 TCGA-HU-8602-01 4 114823494 114823494 T - ARSJ Frame_Shift_Del p.K579Rfs*30 0.35 TCGA-HU-8602-01 4 122078256 122078256 C T TNIP3 Missense_Mutation p.R196Q 0.18 tolerated(1) possibly_damaging(0.756) TCGA-HU-8602-01 4 124323694 124323694 T C SPRY1 Silent p.G316G 0.26 TCGA-HU-8602-01 4 126238513 126238513 G A FAT4 Missense_Mutation p.R316Q 0.19 benign(0.144) TCGA-HU-8602-01 4 128819735 128819735 T - PLK4 3'UTR 0.09 TCGA-HU-8602-01 4 129891618 129891618 G T SCLT1 Missense_Mutation p.A231D 0.19 deleterious(0) possibly_damaging(0.736) TCGA-HU-8602-01 4 134071702 134071702 C T PCDH10 Missense_Mutation p.T136M 0.22 deleterious(0.04) possibly_damaging(0.84) TCGA-HU-8602-01 4 134071743 134071743 G A PCDH10 Missense_Mutation p.D150N 0.22 deleterious(0) probably_damaging(0.996) TCGA-HU-8602-01 4 134073210 134073210 C T PCDH10 Missense_Mutation p.R639C 0.16 deleterious(0) probably_damaging(0.999) TCGA-HU-8602-01 4 134073362 134073362 C T PCDH10 Silent p.G689G 0.37 TCGA-HU-8602-01 4 15054156 15054156 A G CPEB2 Silent p.E773E 0.23 TCGA-HU-8602-01 4 151141893 151141893 C T DCLK2 Silent p.N382N 0.21 TCGA-HU-8602-01 4 151504537 151504537 C T MAB21L2 Missense_Mutation p.A119V 0.15 deleterious(0.01) probably_damaging(0.997) TCGA-HU-8602-01 4 152069114 152069114 G - SH3D19 Frame_Shift_Del p.P401Lfs*43 0.17 TCGA-HU-8602-01 4 153258955 153258955 T A FBXW7 Missense_Mutation p.E287V 0.14 deleterious(0) probably_damaging(0.99) TCGA-HU-8602-01 4 153573938 153573938 G A TMEM154 Missense_Mutation p.P69L 0.21 tolerated(0.16) benign(0.101) TCGA-HU-8602-01 4 154709514 154709514 G A SFRP2 Silent p.S158S 0.11 TCGA-HU-8602-01 4 155458475 155458475 T C PLRG1 Missense_Mutation p.D483G 0.14 deleterious(0) probably_damaging(1) TCGA-HU-8602-01 4 156849509 156849509 T C CTSO Missense_Mutation p.K304E 0.29 deleterious(0.01) probably_damaging(0.98) TCGA-HU-8602-01 4 158254082 158254082 G T GRIA2 Missense_Mutation p.A332S 0.20 tolerated(0.12) probably_damaging(0.998) TCGA-HU-8602-01 4 15938205 15938205 C A FGFBP1 Missense_Mutation p.Q17H 0.20 tolerated(0.09) possibly_damaging(0.522) TCGA-HU-8602-01 4 164050264 164050264 A G NAF1 Missense_Mutation p.F424L 0.18 deleterious(0.03) benign(0.02) TCGA-HU-8602-01 4 164393458 164393458 T C TKTL2 Missense_Mutation p.S477G 0.27 tolerated(0.09) benign(0.306) TCGA-HU-8602-01 4 164394838 164394838 G A TKTL2 Missense_Mutation p.R17W 0.18 deleterious(0.02) benign(0.126) TCGA-HU-8602-01 4 170038835 170038835 G T SH3RF1 Missense_Mutation p.P539H 0.14 deleterious(0.03) benign(0.401) TCGA-HU-8602-01 4 170057635 170057635 T - SH3RF1 Frame_Shift_Del p.K301Sfs*59 0.18 TCGA-HU-8602-01 4 175709964 175709964 T C GLRA3 Intron 0.28 TCGA-HU-8602-01 4 176594945 176594945 C T GPM6A Silent p.A91A 0.28 TCGA-HU-8602-01 4 178262744 178262744 A T NEIL3 Missense_Mutation p.T273S 0.25 deleterious(0) probably_damaging(0.999) TCGA-HU-8602-01 4 186444541 186444541 T C PDLIM3 Missense_Mutation p.K102R 0.27 tolerated(0.1) benign(0.011) TCGA-HU-8602-01 4 186544768 186544768 G A SORBS2 Silent p.D701D 0.33 TCGA-HU-8602-01 4 1953859 1953859 C T WHSC1 Silent p.L680L 0.27 TCGA-HU-8602-01 4 1957027 1957027 C T WHSC1 Silent p.H826H 0.26 TCGA-HU-8602-01 4 2073999 2073999 C T POLN Missense_Mutation p.G849S 0.30 deleterious(0) probably_damaging(1) TCGA-HU-8602-01 4 22389706 22389706 C T GPR125 Silent p.T1196T 0.19 TCGA-HU-8602-01 4 2273491 2273491 C T ZFYVE28 Missense_Mutation p.R780Q 0.27 tolerated(0.06) possibly_damaging(0.716) TCGA-HU-8602-01 4 24534668 24534668 G A DHX15 Missense_Mutation p.S640L 0.22 tolerated(0.08) benign(0.102) TCGA-HU-8602-01 4 2698177 2698177 A - FAM193A Frame_Shift_Del p.M833Wfs*23 0.16 TCGA-HU-8602-01 4 2930344 2930344 A - ADD1 3'UTR 0.27 TCGA-HU-8602-01 4 2934080 2934080 G A MFSD10 Missense_Mutation p.R231W 0.21 deleterious(0) probably_damaging(0.986) TCGA-HU-8602-01 4 3319330 3319330 C T RGS12 Missense_Mutation p.P478L 0.30 tolerated(0.66) benign(0.002) TCGA-HU-8602-01 4 3443797 3443797 C G HGFAC Silent p.L23L 0.35 TCGA-HU-8602-01 4 3450979 3450979 C G HGFAC Missense_Mutation p.P601A 0.14 deleterious(0.02) probably_damaging(0.996) TCGA-HU-8602-01 4 38690460 38690460 A - KLF3 Frame_Shift_Del p.K106Nfs*21 0.33 TCGA-HU-8602-01 4 38799940 38799940 T C TLR1 Silent p.L171L 0.23 TCGA-HU-8602-01 4 39482912 39482912 C A LIAS 3'Flank 0.24 TCGA-HU-8602-01 4 42041027 42041027 T - SLC30A9 Frame_Shift_Del p.F233Lfs*8 0.20 TCGA-HU-8602-01 4 42119657 42119657 G A BEND4 Nonsense_Mutation p.R495* 0.28 TCGA-HU-8602-01 4 4304473 4304473 A - ZBTB49 Frame_Shift_Del p.K305Rfs*5 0.26 TCGA-HU-8602-01 4 54250025 54250025 C T FIP1L1 Missense_Mutation p.T105M 0.23 deleterious(0) probably_damaging(0.999) TCGA-HU-8602-01 4 5733255 5733255 G T EVC Missense_Mutation p.S163I 0.24 deleterious(0) probably_damaging(0.999) TCGA-HU-8602-01 4 57796802 57796802 G A REST Missense_Mutation p.S593N 0.26 tolerated(0.16) benign(0.037) TCGA-HU-8602-01 4 6599981 6599981 C T MAN2B2 Silent p.Y435Y 0.12 TCGA-HU-8602-01 4 6610942 6610942 G T MAN2B2 Missense_Mutation p.K641N 0.16 tolerated(0.14) benign(0.008) TCGA-HU-8602-01 4 66233108 66233108 C T EPHA5 Missense_Mutation p.E631K 0.22 deleterious(0.01) benign(0.152) TCGA-HU-8602-01 4 69817137 69817137 A - UGT2A3 Frame_Shift_Del p.F114Lfs*4 0.19 TCGA-HU-8602-01 4 70070285 70070285 C A UGT2B11 Silent p.V391V 0.41 TCGA-HU-8602-01 4 70504697 70504697 T - UGT2A2 Frame_Shift_Del p.N221Ifs*27 0.24 TCGA-HU-8602-01 4 71554418 71554418 C T UTP3 Silent p.R8R 0.19 TCGA-HU-8602-01 4 75167509 75167509 A - MTHFD2L Frame_Shift_Del p.I345Sfs*48 0.22 TCGA-HU-8602-01 4 7533275 7533275 G A SORCS2 Silent p.T189T 0.12 TCGA-HU-8602-01 4 77678005 77678005 C T SHROOM3 Nonsense_Mutation p.R1705* 0.23 TCGA-HU-8602-01 4 7776655 7776655 T A AFAP1 Intron 0.19 TCGA-HU-8602-01 4 78669516 78669516 C T CNOT6L Silent p.P171P 0.15 TCGA-HU-8602-01 4 79832739 79832739 G A BMP2K Missense_Mutation p.R1013H 0.29 deleterious_low_confidence(0) unknown(0) TCGA-HU-8602-01 4 81256977 81256977 G A C4orf22 Missense_Mutation p.A19T 0.25 tolerated(1) benign(0) TCGA-HU-8602-01 4 83788110 83788110 A - SEC31A Frame_Shift_Del p.S350Hfs*30 0.15 TCGA-HU-8602-01 4 84194759 84194759 T C COQ2 Silent p.T194T 0.23 TCGA-HU-8602-01 4 9557838 9557838 T G MIR548I2 RNA 0.19 TCGA-HU-8602-01 5 101572530 101572530 C G SLCO4C1 3'UTR 0.23 TCGA-HU-8602-01 5 112770134 112770134 G A TSSK1B Missense_Mutation p.R135W 0.27 deleterious(0) probably_damaging(1) TCGA-HU-8602-01 5 113698896 113698896 G A KCNN2 Missense_Mutation p.G142S 0.24 deleterious(0.02) probably_damaging(0.992) TCGA-HU-8602-01 5 114878754 114878754 T C FEM1C Missense_Mutation p.N146S 0.28 deleterious(0.02) probably_damaging(0.999) TCGA-HU-8602-01 5 115336319 115336319 C T AQPEP Silent p.N537N 0.16 TCGA-HU-8602-01 5 122713213 122713213 T - CEP120 Frame_Shift_Del p.K738Rfs*29 0.19 TCGA-HU-8602-01 5 122926182 122926182 T - CSNK1G3 Frame_Shift_Del p.F308Lfs*73 0.14 TCGA-HU-8602-01 5 1242892 1242892 G A SLC6A18 Missense_Mutation p.V349I 0.22 tolerated(0.28) benign(0.322) TCGA-HU-8602-01 5 125939415 125939415 C T PHAX Nonsense_Mutation p.R84* 0.26 TCGA-HU-8602-01 5 125939711 125939712 - A PHAX Frame_Shift_Ins p.M185Nfs*32 0.25 TCGA-HU-8602-01 5 126793024 126793024 C T MEGF10 3'UTR 0.21 TCGA-HU-8602-01 5 127624846 127624846 G A FBN2 Missense_Mutation p.L2204F 0.19 deleterious(0) possibly_damaging(0.461) TCGA-HU-8602-01 5 131721153 131721153 G A SLC22A5 Silent p.A262A 0.39 TCGA-HU-8602-01 5 132223801 132223801 A G AFF4 Silent p.N928N 0.23 TCGA-HU-8602-01 5 132439995 132439995 A - HSPA4 Frame_Shift_Del p.N799Mfs*50 0.24 TCGA-HU-8602-01 5 133541549 133541549 A G PPP2CA Intron 0.25 TCGA-HU-8602-01 5 134022491 134022491 T C SEC24A Silent p.P501P 0.29 TCGA-HU-8602-01 5 134305723 134305723 T - CATSPER3 Frame_Shift_Del p.F66Lfs*10 0.24 TCGA-HU-8602-01 5 134724631 134724631 G A H2AFY Silent p.A51A 0.26 TCGA-HU-8602-01 5 13781014 13781014 C T DNAH5 Missense_Mutation p.G2959R 0.24 probably_damaging(0.989) TCGA-HU-8602-01 5 138260955 138260955 T - CTNNA1 Frame_Shift_Del p.F587Lfs*5 0.16 TCGA-HU-8602-01 5 138269587 138269587 C T CTNNA1 Nonsense_Mutation p.Q844* 0.18 TCGA-HU-8602-01 5 139192937 139192937 G A PSD2 Missense_Mutation p.A139T 0.35 deleterious(0.04) benign(0.004) TCGA-HU-8602-01 5 140011861 140011861 C T CD14 Silent p.T236T 0.15 TCGA-HU-8602-01 5 140052309 140052309 G A DND1 Missense_Mutation p.R109C 0.27 deleterious(0.02) probably_damaging(0.97) TCGA-HU-8602-01 5 140188395 140188395 C T PCDHA4 Silent p.G541G 0.23 TCGA-HU-8602-01 5 140203028 140203028 C T PCDHA5 Silent p.D556D 0.14 TCGA-HU-8602-01 5 140222193 140222193 C T PCDHA8 Silent p.D429D 0.22 TCGA-HU-8602-01 5 140229559 140229559 G A PCDHA9 Silent p.S493S 0.26 TCGA-HU-8602-01 5 140230509 140230509 T - PCDHA9 Intron 0.25 TCGA-HU-8602-01 5 140262068 140262068 G A PCDHA13 Missense_Mutation p.G72E 0.22 deleterious_low_confidence(0.04) benign(0.04) TCGA-HU-8602-01 5 140307102 140307102 G A PCDHAC1 Missense_Mutation p.G209R 0.31 deleterious(0) probably_damaging(1) TCGA-HU-8602-01 5 140308685 140308685 C A PCDHAC1 Nonsense_Mutation p.C736* 0.25 TCGA-HU-8602-01 5 140530600 140530600 C - PCDHB6 Frame_Shift_Del p.L256Sfs*13 0.18 TCGA-HU-8602-01 5 140573799 140573799 G A PCDHB10 Silent p.S558S 0.20 TCGA-HU-8602-01 5 140588576 140588576 T - PCDHB12 Frame_Shift_Del p.L34Wfs*2 0.12 TCGA-HU-8602-01 5 140625739 140625739 C T PCDHB15 Missense_Mutation p.T198I 0.22 deleterious_low_confidence(0) benign(0.017) TCGA-HU-8602-01 5 140753888 140753888 C T PCDHGA6 Nonsense_Mutation p.R80* 0.26 TCGA-HU-8602-01 5 140755633 140755633 C T PCDHGA6 Silent p.T661T 0.18 TCGA-HU-8602-01 5 140782735 140782735 G A PCDHGA9 Silent p.T72T 0.23 TCGA-HU-8602-01 5 140789448 140789448 C T PCDHGB6 Missense_Mutation p.P560L 0.21 deleterious(0.01) probably_damaging(0.994) TCGA-HU-8602-01 5 140798891 140798893 TAC AG PCDHGB7 Frame_Shift_Del p.Y489Sfs*19 0.12 TCGA-HU-8602-01 5 140856586 140856586 C T PCDHGC3 Silent p.T301T 0.26 TCGA-HU-8602-01 5 140857742 140857742 A - PCDHGC3 Frame_Shift_Del p.N689Ifs*10 0.27 TCGA-HU-8602-01 5 141059689 141059689 C - ARAP3 Frame_Shift_Del p.G122Dfs*28 0.18 TCGA-HU-8602-01 5 141335577 141335577 G A PCDH12 Missense_Mutation p.R614W 0.19 tolerated(0.06) benign(0.004) TCGA-HU-8602-01 5 145439648 145439648 G A SH3RF2 Nonsense_Mutation p.W592* 0.24 TCGA-HU-8602-01 5 145838596 145838596 G A TCERG1 Silent p.Q196Q 0.13 TCGA-HU-8602-01 5 1463741 1463741 C G LPCAT1 3'UTR 0.21 TCGA-HU-8602-01 5 14711209 14711209 A - ANKH 3'UTR 0.33 TCGA-HU-8602-01 5 149206386 149206386 C - PPARGC1B Frame_Shift_Del p.S137Afs*69 0.20 TCGA-HU-8602-01 5 150660642 150660642 G A SLC36A3 Silent p.S400S 0.17 TCGA-HU-8602-01 5 150891874 150891874 G A FAT2 Silent p.N3919N 0.30 TCGA-HU-8602-01 5 154065380 154065383 TTTA - MIR1303 RNA 0.11 TCGA-HU-8602-01 5 154287348 154287348 C T GEMIN5 Missense_Mutation p.R733Q 0.21 tolerated(0.09) probably_damaging(0.932) TCGA-HU-8602-01 5 156593237 156593237 C T FAM71B 5'UTR 0.16 TCGA-HU-8602-01 5 15928421 15928421 G A FBXL7 Missense_Mutation p.V184M 0.25 deleterious(0.04) possibly_damaging(0.537) TCGA-HU-8602-01 5 159738888 159738888 C T CCNJL Missense_Mutation p.V15I 0.16 tolerated(1) benign(0.014) TCGA-HU-8602-01 5 160763740 160763740 C T GABRB2 Missense_Mutation p.R193H 0.16 tolerated(0.06) benign(0.318) TCGA-HU-8602-01 5 167673928 167673928 C T TENM2 Missense_Mutation p.S1995L 0.29 deleterious(0) possibly_damaging(0.803) TCGA-HU-8602-01 5 169116325 169116325 G C DOCK2 Missense_Mutation p.K277N 0.23 deleterious(0.03) benign(0.23) TCGA-HU-8602-01 5 169533117 169533117 C T FOXI1 Silent p.G52G 0.17 TCGA-HU-8602-01 5 170883662 170883662 G A FGF18 Silent p.P159P 0.20 TCGA-HU-8602-01 5 171337640 171337640 C T FBXW11 Silent p.Q103Q 0.23 TCGA-HU-8602-01 5 173036293 173036293 A G BOD1 Silent p.P169P 0.19 TCGA-HU-8602-01 5 175998265 175998265 G A CDHR2 Missense_Mutation p.V123I 0.21 tolerated(0.2) benign(0.031) TCGA-HU-8602-01 5 176004426 176004426 G A CDHR2 Silent p.S407S 0.21 TCGA-HU-8602-01 5 176011888 176011888 C T CDHR2 Missense_Mutation p.A869V 0.28 tolerated(0.42) benign(0.002) TCGA-HU-8602-01 5 176016106 176016106 C T CDHR2 Silent p.D977D 0.17 TCGA-HU-8602-01 5 176700715 176700715 A - NSD1 Frame_Shift_Del p.E1853Sfs*2 0.20 TCGA-HU-8602-01 5 177031390 177031390 C T B4GALT7 Silent p.D87D 0.24 TCGA-HU-8602-01 5 180055897 180055897 G - FLT4 Frame_Shift_Del p.P363Rfs*27 0.18 TCGA-HU-8602-01 5 180057684 180057684 G A FLT4 Missense_Mutation p.P91S 0.21 deleterious(0.05) possibly_damaging(0.861) TCGA-HU-8602-01 5 180375939 180375939 A T BTNL8 Silent p.G276G 0.11 TCGA-HU-8602-01 5 31401627 31401627 C T DROSHA Missense_Mutation p.R1346Q 0.23 tolerated(0.05) benign(0.056) TCGA-HU-8602-01 5 32058054 32058054 C T PDZD2 Missense_Mutation p.S682L 0.22 tolerated(0.06) probably_damaging(0.998) TCGA-HU-8602-01 5 32101067 32101070 TAAG - PDZD2 Intron 0.24 TCGA-HU-8602-01 5 32355893 32355893 T - ZFR Frame_Shift_Del p.D1067Tfs*13 0.20 TCGA-HU-8602-01 5 33614441 33614441 T C ADAMTS12 Missense_Mutation p.Y810C 0.18 deleterious(0) probably_damaging(0.994) TCGA-HU-8602-01 5 33936796 33936796 G A RXFP3 5'UTR 0.18 TCGA-HU-8602-01 5 34949704 34949704 A - DNAJC21 Frame_Shift_Del p.K416Sfs*33 0.36 TCGA-HU-8602-01 5 35867541 35867541 A - IL7R Frame_Shift_Del p.I121* 0.19 TCGA-HU-8602-01 5 36962233 36962233 T C NIPBL Missense_Mutation p.V156A 0.23 tolerated(0.14) benign(0.044) TCGA-HU-8602-01 5 38482286 38482286 G T LIFR Missense_Mutation p.P902H 0.21 deleterious(0) probably_damaging(1) TCGA-HU-8602-01 5 38876360 38876360 C T OSMR Missense_Mutation p.T44M 0.18 deleterious(0.02) possibly_damaging(0.518) TCGA-HU-8602-01 5 39202444 39202444 C T FYB Missense_Mutation p.E217K 0.20 tolerated(0.09) benign(0.079) TCGA-HU-8602-01 5 44388464 44388464 C T FGF10 Silent p.P107P 0.18 TCGA-HU-8602-01 5 45262402 45262402 T - HCN1 Frame_Shift_Del p.N765Mfs*15 0.19 TCGA-HU-8602-01 5 45262443 45262443 C T HCN1 Silent p.P751P 0.21 TCGA-HU-8602-01 5 45462087 45462087 A C HCN1 Missense_Mutation p.L291R 0.21 deleterious(0) probably_damaging(0.995) TCGA-HU-8602-01 5 49724051 49724051 A - EMB Frame_Shift_Del p.F41Lfs*10 0.12 TCGA-HU-8602-01 5 52183690 52183690 A - ITGA1 Frame_Shift_Del p.V275Sfs*5 0.11 TCGA-HU-8602-01 5 54320634 54320634 C T GZMK Missense_Mutation p.R71W 0.12 tolerated(0.16) benign(0.001) TCGA-HU-8602-01 5 5461196 5461196 C T KIAA0947 Silent p.G583G 0.15 TCGA-HU-8602-01 5 55247869 55247869 T - IL6ST Frame_Shift_Del p.V530* 0.18 TCGA-HU-8602-01 5 64905171 64905171 G A TRIM23 Missense_Mutation p.R315C 0.29 deleterious(0) possibly_damaging(0.745) TCGA-HU-8602-01 5 66462647 66462647 G A MAST4 Missense_Mutation p.R2547Q 0.33 benign(0.022) TCGA-HU-8602-01 5 66478620 66478620 C T CD180 3'UTR 0.20 TCGA-HU-8602-01 5 6755008 6755008 A - PAPD7 Frame_Shift_Del p.K528Nfs*11 0.19 TCGA-HU-8602-01 5 70798603 70798603 C T BDP1 Silent p.S742S 0.14 TCGA-HU-8602-01 5 71015134 71015134 G A CARTPT Missense_Mutation p.R5H 0.19 deleterious(0.01) probably_damaging(0.964) TCGA-HU-8602-01 5 71648518 71648518 A - PTCD2 Frame_Shift_Del p.N295Mfs*11 0.18 TCGA-HU-8602-01 5 75428079 75428079 G T SV2C Missense_Mutation p.E168D 0.27 deleterious(0.04) probably_damaging(0.999) TCGA-HU-8602-01 5 76707503 76707503 C T PDE8B Silent p.D511D 0.25 TCGA-HU-8602-01 5 79368169 79368169 G T THBS4 Missense_Mutation p.G597C 0.17 deleterious(0) possibly_damaging(0.881) TCGA-HU-8602-01 5 79446741 79446741 G A SERINC5 Silent p.D339D 0.21 TCGA-HU-8602-01 5 79498851 79498851 C T SERINC5 Missense_Mutation p.A17T 0.18 deleterious(0.04) unknown(0) TCGA-HU-8602-01 5 79966006 79966006 C T MSH3 Missense_Mutation p.R224W 0.25 deleterious(0) probably_damaging(0.991) TCGA-HU-8602-01 5 82836308 82836308 A G VCAN Missense_Mutation p.N2496D 0.20 tolerated(0.07) benign(0.334) TCGA-HU-8602-01 5 90086922 90086922 A G GPR98 Missense_Mutation p.D4759G 0.38 probably_damaging(0.956) TCGA-HU-8602-01 5 9136666 9136666 C G SEMA5A Missense_Mutation p.E517Q 0.25 tolerated(0.07) probably_damaging(0.944) TCGA-HU-8602-01 5 92923984 92923984 G A NR2F1 Silent p.P275P 0.14 TCGA-HU-8602-01 5 95067839 95067839 T - RHOBTB3 Intron 0.29 TCGA-HU-8602-01 5 95233979 95233979 G A ELL2 Missense_Mutation p.A497V 0.19 tolerated(0.28) benign(0.003) TCGA-HU-8602-01 5 96116880 96116880 C A ERAP1 Nonsense_Mutation p.G824* 0.16 TCGA-HU-8602-01 5 96358076 96358076 C T LNPEP Nonsense_Mutation p.R817* 0.13 TCGA-HU-8602-01 6 102074490 102074490 G A GRIK2 Silent p.T173T 0.35 TCGA-HU-8602-01 6 10402829 10402829 T - TFAP2A Frame_Shift_Del p.N260Mfs*6 0.16 TCGA-HU-8602-01 6 105239495 105239495 G T HACE1 Missense_Mutation p.L320I 0.21 deleterious(0.01) possibly_damaging(0.505) TCGA-HU-8602-01 6 106536269 106536269 C T PRDM1 Missense_Mutation p.A79V 0.18 deleterious(0) probably_damaging(0.998) TCGA-HU-8602-01 6 106553564 106553564 G A PRDM1 Missense_Mutation p.C510Y 0.23 tolerated(0.15) benign(0.304) TCGA-HU-8602-01 6 106634461 106634461 G A ATG5 Missense_Mutation p.P261L 0.29 deleterious(0.03) probably_damaging(0.977) TCGA-HU-8602-01 6 110763711 110763711 T - SLC22A16 Frame_Shift_Del p.I307* 0.18 TCGA-HU-8602-01 6 111498763 111498763 A - SLC16A10 Frame_Shift_Del p.I282Ffs*9 0.26 TCGA-HU-8602-01 6 111656711 111656711 A - REV3L Frame_Shift_Del p.F2547Lfs*9 0.20 TCGA-HU-8602-01 6 111695847 111695847 A G REV3L Silent p.A1237A 0.23 TCGA-HU-8602-01 6 116277749 116277749 A G FRK Missense_Mutation p.L275P 0.26 deleterious(0) probably_damaging(0.998) TCGA-HU-8602-01 6 117631391 117631391 C T ROS1 Missense_Mutation p.R2096Q 0.23 deleterious(0) probably_damaging(1) TCGA-HU-8602-01 6 128311944 128311944 T C PTPRK Silent p.E1028E 0.26 TCGA-HU-8602-01 6 128326373 128326374 - T PTPRK Frame_Shift_Ins p.R784Tfs*25 0.18 TCGA-HU-8602-01 6 130182311 130182311 G A TMEM244 Missense_Mutation p.A8V 0.19 tolerated(0.43) benign(0.058) TCGA-HU-8602-01 6 130370502 130370502 G A L3MBTL3 Missense_Mutation p.A60T 0.14 deleterious(0.05) probably_damaging(0.998) TCGA-HU-8602-01 6 130454682 130454682 C A L3MBTL3 Silent p.P684P 0.20 TCGA-HU-8602-01 6 132045205 132045205 A G ENPP3 Missense_Mutation p.Q591R 0.20 tolerated(0.27) benign(0.002) TCGA-HU-8602-01 6 13365828 13365828 G A GFOD1 Missense_Mutation p.A107V 0.17 deleterious(0) probably_damaging(0.977) TCGA-HU-8602-01 6 136597451 136597453 CTC - BCLAF1 In_Frame_Del p.E404del 0.10 TCGA-HU-8602-01 6 138195987 138195987 G A TNFAIP3 Missense_Mutation p.G101S 0.27 deleterious(0.01) probably_damaging(1) TCGA-HU-8602-01 6 146276057 146276057 G A SHPRH Silent p.S134S 0.23 TCGA-HU-8602-01 6 146720722 146720722 C A GRM1 Silent p.A849A 0.21 TCGA-HU-8602-01 6 146755477 146755477 G A GRM1 Missense_Mutation p.A1044T 0.18 tolerated_low_confidence(0.07) benign(0.001) TCGA-HU-8602-01 6 147588297 147588297 T C STXBP5 Silent p.Y236Y 0.28 TCGA-HU-8602-01 6 147648266 147648266 T - STXBP5 Frame_Shift_Del p.F646Lfs*84 0.14 TCGA-HU-8602-01 6 150123459 150123459 G A PCMT1 Missense_Mutation p.G268R 0.21 deleterious(0.01) possibly_damaging(0.46) TCGA-HU-8602-01 6 151687158 151687158 T C ZBTB2 Missense_Mutation p.N348S 0.18 tolerated(0.33) probably_damaging(0.956) TCGA-HU-8602-01 6 151687648 151687648 C T ZBTB2 Missense_Mutation p.A185T 0.20 tolerated(0.51) benign(0) TCGA-HU-8602-01 6 15520515 15520515 T - JARID2 3'UTR 0.17 TCGA-HU-8602-01 6 157488172 157488172 A G ARID1B Splice_Site p.X960_splice 0.26 TCGA-HU-8602-01 6 160494972 160494972 G A IGF2R Missense_Mutation p.A1711T 0.33 deleterious(0) possibly_damaging(0.842) TCGA-HU-8602-01 6 166579295 166579295 G A T Nonsense_Mutation p.R169* 0.20 TCGA-HU-8602-01 6 166580151 166580151 C - T Frame_Shift_Del p.A134Pfs*4 0.20 TCGA-HU-8602-01 6 167753909 167753909 T C TTLL2 Missense_Mutation p.L174P 0.23 deleterious(0) probably_damaging(0.994) TCGA-HU-8602-01 6 168315898 168315899 AG - MLLT4 Frame_Shift_Del p.R777Sfs*24 0.15 TCGA-HU-8602-01 6 168352326 168352326 C T MLLT4 Missense_Mutation p.A1424V 0.18 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-HU-8602-01 6 169637357 169637357 C T THBS2 Missense_Mutation p.R462H 0.20 deleterious(0) probably_damaging(0.99) TCGA-HU-8602-01 6 170162628 170162628 G C ERMARD Splice_Site p.X320_splice 0.24 TCGA-HU-8602-01 6 18222307 18222307 A - KDM1B 3'UTR 0.20 TCGA-HU-8602-01 6 20124681 20124681 T C MBOAT1 Missense_Mutation p.M289V 0.24 tolerated(0.26) benign(0.026) TCGA-HU-8602-01 6 21201396 21201396 A G CDKAL1 Missense_Mutation p.Y480C 0.19 tolerated(0.16) benign(0.033) TCGA-HU-8602-01 6 24301971 24301971 T - DCDC2 Frame_Shift_Del p.I177Sfs*3 0.22 TCGA-HU-8602-01 6 24547486 24547486 G A KIAA0319 Silent p.S1042S 0.19 TCGA-HU-8602-01 6 26217419 26217419 G A HIST1H2AE Missense_Mutation p.D73N 0.16 deleterious_low_confidence(0) benign(0.338) TCGA-HU-8602-01 6 26217530 26217530 C T HIST1H2AE Missense_Mutation p.P110S 0.10 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-HU-8602-01 6 2693062 2693062 G A MYLK4 Missense_Mutation p.T64M 0.15 tolerated_low_confidence(0.09) benign(0.112) TCGA-HU-8602-01 6 28268977 28268977 G T PGBD1 Missense_Mutation p.S449I 0.19 deleterious(0.02) possibly_damaging(0.522) TCGA-HU-8602-01 6 29577006 29577006 C T GABBR1 Missense_Mutation p.R620H 0.21 deleterious(0) probably_damaging(0.991) TCGA-HU-8602-01 6 29912081 29912082 - G HLA-A Frame_Shift_Ins p.A269Gfs*20 0.16 TCGA-HU-8602-01 6 30078384 30078386 CTC - TRIM31 In_Frame_Del p.E195del 0.19 TCGA-HU-8602-01 6 30080571 30080571 C T TRIM31 Silent p.G4G 0.25 TCGA-HU-8602-01 6 30308351 30308351 T C TRIM39 Silent p.F321F 0.22 TCGA-HU-8602-01 6 30624769 30624769 C T DHX16 Missense_Mutation p.R703H 0.26 deleterious(0.01) unknown(0) TCGA-HU-8602-01 6 30955980 30955980 G A MUC21 3'UTR 0.30 TCGA-HU-8602-01 6 31125206 31125206 G A CCHCR1 Missense_Mutation p.P58S 0.22 tolerated_low_confidence(0.27) benign(0.007) TCGA-HU-8602-01 6 31473409 31473409 G A MICB Missense_Mutation p.R29H 0.22 tolerated(0.81) benign(0.014) TCGA-HU-8602-01 6 31661161 31661161 A C ABHD16A Missense_Mutation p.F160V 0.19 deleterious(0) benign(0.253) TCGA-HU-8602-01 6 31727272 31727272 T C MSH5 Missense_Mutation p.L493P 0.23 deleterious(0) probably_damaging(0.983) TCGA-HU-8602-01 6 31750526 31750527 - C VARS Frame_Shift_Ins p.A620Gfs*16 0.21 TCGA-HU-8602-01 6 31833125 31833125 T - SLC44A4 Frame_Shift_Del p.N576Mfs*67 0.21 TCGA-HU-8602-01 6 31854829 31854829 C T EHMT2 Silent p.T687T 0.24 TCGA-HU-8602-01 6 32134319 32134321 ACA - EGFL8 In_Frame_Del p.N50del 0.23 TCGA-HU-8602-01 6 32189085 32189085 G A NOTCH4 Missense_Mutation p.R157W 0.15 deleterious(0.01) possibly_damaging(0.816) TCGA-HU-8602-01 6 33246150 33246150 G T B3GALT4 Silent p.P318P 0.20 TCGA-HU-8602-01 6 33272343 33272343 A C TAPBP Missense_Mutation p.L314R 0.23 tolerated(0.3) benign(0.255) TCGA-HU-8602-01 6 33411684 33411684 G - SYNGAP1 Frame_Shift_Del p.G1120Afs*10 0.24 TCGA-HU-8602-01 6 33663508 33663508 G A ITPR3 Missense_Mutation p.R2656H 0.19 tolerated(0.09) possibly_damaging(0.818) TCGA-HU-8602-01 6 34003851 34003851 C T GRM4 Missense_Mutation p.R679H 0.11 deleterious(0) probably_damaging(1) TCGA-HU-8602-01 6 35196408 35196408 C T SCUBE3 Nonsense_Mutation p.R76* 0.20 TCGA-HU-8602-01 6 35466128 35466128 G A TULP1 Silent p.F535F 0.21 TCGA-HU-8602-01 6 35467757 35467757 C T TULP1 Splice_Site p.X499_splice 0.29 TCGA-HU-8602-01 6 35762792 35762792 C T CLPS 3'UTR 0.19 TCGA-HU-8602-01 6 35965630 35965630 T C SLC26A8 Missense_Mutation p.Q171R 0.28 tolerated(0.2) benign(0) TCGA-HU-8602-01 6 36168884 36168887 CTCC - BRPF3 Frame_Shift_Del p.S264Gfs*59 0.31 TCGA-HU-8602-01 6 37614111 37614111 C T MDGA1 Missense_Mutation p.R696Q 0.20 tolerated(0.2) benign(0.003) TCGA-HU-8602-01 6 38828322 38828322 G A DNAH8 Silent p.V1799V 0.22 TCGA-HU-8602-01 6 38862578 38862578 C T DNAH8 Silent p.C2678C 0.28 TCGA-HU-8602-01 6 394848 394848 C T IRF4 Nonsense_Mutation p.R82* 0.24 TCGA-HU-8602-01 6 39693147 39693147 T C KIF6 5'UTR 0.14 TCGA-HU-8602-01 6 41557781 41557781 C - FOXP4 Frame_Shift_Del p.P412Rfs*77 0.20 TCGA-HU-8602-01 6 41710153 41710153 C T PGC Silent p.A174A 0.22 TCGA-HU-8602-01 6 42934036 42934036 G A PEX6 Silent p.T748T 0.20 TCGA-HU-8602-01 6 44148518 44148518 C T CAPN11 Silent p.L594L 0.19 TCGA-HU-8602-01 6 46661330 46661330 A G TDRD6 Missense_Mutation p.H1822R 0.18 tolerated(0.55) benign(0.001) TCGA-HU-8602-01 6 46826552 46826552 A G GPR116 Missense_Mutation p.C1030R 0.24 deleterious(0) probably_damaging(0.998) TCGA-HU-8602-01 6 52993439 52993439 G A GCM1 Silent p.G292G 0.17 TCGA-HU-8602-01 6 55266626 55266626 C T GFRAL Missense_Mutation p.S387L 0.18 tolerated(0.09) benign(0) TCGA-HU-8602-01 6 56434717 56434717 T - DST Frame_Shift_Del p.V1983Ffs*13 0.23 TCGA-HU-8602-01 6 69653743 69653743 G T BAI3 Missense_Mutation p.W351L 0.19 deleterious(0) probably_damaging(0.996) TCGA-HU-8602-01 6 70034893 70034893 C T BAI3 Missense_Mutation p.R982C 0.22 deleterious(0) probably_damaging(0.938) TCGA-HU-8602-01 6 70098683 70098683 C T BAI3 Missense_Mutation p.T1490I 0.26 deleterious(0) benign(0.046) TCGA-HU-8602-01 6 71238145 71238145 C T FAM135A Silent p.H1255H 0.07 TCGA-HU-8602-01 6 7230666 7230666 C T RREB1 Silent p.R778R 0.17 TCGA-HU-8602-01 6 74351590 74351590 A - SLC17A5 Frame_Shift_Del p.Y117Mfs*17 0.22 TCGA-HU-8602-01 6 80228605 80228605 C - LCA5 Frame_Shift_Del p.E3Kfs*108 0.21 TCGA-HU-8602-01 6 80720539 80720539 A - TTK Frame_Shift_Del p.S162Vfs*9 0.22 TCGA-HU-8602-01 6 82891683 82891683 T - IBTK Frame_Shift_Del p.K1213Sfs*50 0.31 TCGA-HU-8602-01 6 84930884 84930884 T C KIAA1009 Silent p.S21S 0.23 TCGA-HU-8602-01 6 88046820 88046820 G T SMIM8 Missense_Mutation p.G24V 0.17 deleterious(0) probably_damaging(1) TCGA-HU-8602-01 6 89793717 89793717 G A PNRC1 Silent p.S262S 0.22 TCGA-HU-8602-01 6 90359786 90359786 G A MDN1 Missense_Mutation p.A5388V 0.19 unknown(0) TCGA-HU-8602-01 6 99283463 99283465 GCC - POU3F2 In_Frame_Del p.P245del 0.32 TCGA-HU-8602-01 7 100085884 100085884 C - NYAP1 Frame_Shift_Del p.P182Qfs*21 0.22 TCGA-HU-8602-01 7 100806796 100806796 G C VGF Missense_Mutation p.D443E 0.20 deleterious_low_confidence(0.02) unknown(0) TCGA-HU-8602-01 7 101821799 101821799 C T CUX1 Silent p.A304A 0.18 TCGA-HU-8602-01 7 1026290 1026290 C A CYP2W1 Missense_Mutation p.L226M 0.20 deleterious(0.03) possibly_damaging(0.517) TCGA-HU-8602-01 7 104747115 104747115 C T KMT2E Missense_Mutation p.R915W 0.22 deleterious_low_confidence(0) possibly_damaging(0.689) TCGA-HU-8602-01 7 107671340 107671340 G A LAMB4 Nonsense_Mutation p.Q1635* 0.17 TCGA-HU-8602-01 7 116397718 116397718 G A MET Silent p.P664P 0.24 TCGA-HU-8602-01 7 116422111 116422111 A - MET Frame_Shift_Del p.K1217Sfs*49 0.20 TCGA-HU-8602-01 7 121650506 121650506 G A PTPRZ1 Missense_Mutation p.R469H 0.27 tolerated(0.33) benign(0.003) TCGA-HU-8602-01 7 122809354 122809354 A - SLC13A1 Frame_Shift_Del p.L134Cfs*14 0.17 TCGA-HU-8602-01 7 127225103 127225103 A G GCC1 Missense_Mutation p.L45P 0.08 deleterious(0) probably_damaging(0.999) TCGA-HU-8602-01 7 127894749 127894749 C G LEP Missense_Mutation p.A146G 0.20 deleterious(0) possibly_damaging(0.657) TCGA-HU-8602-01 7 128493526 128493526 A G FLNC Missense_Mutation p.Y2071C 0.15 deleterious(0.01) probably_damaging(0.997) TCGA-HU-8602-01 7 129662199 129662199 G A ZC3HC1 Missense_Mutation p.A467V 0.27 deleterious(0.01) possibly_damaging(0.803) TCGA-HU-8602-01 7 130007750 130007750 G A CPA5 Missense_Mutation p.D348N 0.26 tolerated(0.38) benign(0.002) TCGA-HU-8602-01 7 134225823 134225823 C A AKR1B10 Silent p.P311P 0.14 TCGA-HU-8602-01 7 138279229 138279229 A T SVOPL 3'Flank 0.25 TCGA-HU-8602-01 7 139268706 139268706 C T HIPK2 Missense_Mutation p.R941H 0.32 tolerated(0.52) benign(0.007) TCGA-HU-8602-01 7 140301369 140301369 C T DENND2A Missense_Mutation p.G277R 0.09 deleterious(0.02) possibly_damaging(0.717) TCGA-HU-8602-01 7 141739966 141739966 G A MGAM Missense_Mutation p.E790K 0.17 deleterious(0.04) benign(0.016) TCGA-HU-8602-01 7 141752641 141752641 A G MGAM Missense_Mutation p.S1006G 0.20 tolerated(0.16) benign(0.001) TCGA-HU-8602-01 7 142148976 142148976 C T TRBV5-5 Missense_Mutation p.A99T 0.18 tolerated(0.4) benign(0.015) TCGA-HU-8602-01 7 142326757 142326757 G A TRBV19 Missense_Mutation p.V19M 0.21 tolerated(0.74) benign(0.009) TCGA-HU-8602-01 7 143054384 143054384 A G FAM131B Missense_Mutation p.M200T 0.15 tolerated(0.29) benign(0.39) TCGA-HU-8602-01 7 143079937 143079937 G A ZYX Missense_Mutation p.S182N 0.27 tolerated(0.52) benign(0.249) TCGA-HU-8602-01 7 143701249 143701249 C T OR6B1 Missense_Mutation p.P54S 0.23 tolerated(0.97) benign(0.002) TCGA-HU-8602-01 7 148947624 148947624 G - ZNF212 Frame_Shift_Del p.E135Rfs*35 0.17 TCGA-HU-8602-01 7 150028250 150028250 C T ZBED6CL 3'UTR 0.30 TCGA-HU-8602-01 7 150217889 150217889 T - GIMAP7 Frame_Shift_Del p.F277Lfs*28 0.23 TCGA-HU-8602-01 7 150932678 150932678 G A CHPF2 Missense_Mutation p.G270S 0.27 tolerated(1) benign(0.013) TCGA-HU-8602-01 7 154863287 154863287 T C HTR5A Silent p.A226A 0.20 TCGA-HU-8602-01 7 1608845 1608845 G A PSMG3 Missense_Mutation p.T44I 0.15 deleterious(0) probably_damaging(0.993) TCGA-HU-8602-01 7 19156645 19156645 C T TWIST1 Silent p.P100P 0.39 TCGA-HU-8602-01 7 21550662 21550662 G A SP4 Silent p.P710P 0.23 TCGA-HU-8602-01 7 23286459 23286459 C T GPNMB 5'UTR 0.31 TCGA-HU-8602-01 7 23309629 23309629 G A GPNMB Missense_Mutation p.E434K 0.24 tolerated(0.23) benign(0.001) TCGA-HU-8602-01 7 23545380 23545380 G A TRA2A Missense_Mutation p.R275C 0.24 deleterious_low_confidence(0) unknown(0) TCGA-HU-8602-01 7 2405962 2405962 A T EIF3B Missense_Mutation p.T390S 0.20 tolerated(0.14) benign(0.152) TCGA-HU-8602-01 7 24324899 24324899 C A NPY Missense_Mutation p.L14I 0.15 tolerated(0.13) benign(0.059) TCGA-HU-8602-01 7 27213774 27213774 C - HOXA10 Frame_Shift_Del p.G51Afs*53 0.29 TCGA-HU-8602-01 7 2976790 2976790 G A CARD11 Missense_Mutation p.R408C 0.17 deleterious(0) probably_damaging(1) TCGA-HU-8602-01 7 37382323 37382323 T C ELMO1 5'UTR 0.26 TCGA-HU-8602-01 7 37960370 37960370 C T EPDR1 5'UTR 0.12 TCGA-HU-8602-01 7 38725064 38725064 T - FAM183B 3'UTR 0.34 TCGA-HU-8602-01 7 38810820 38810820 T - VPS41 Frame_Shift_Del p.N388Ifs*15 0.16 TCGA-HU-8602-01 7 40037187 40037187 C T CDK13 Missense_Mutation p.P656S 0.20 tolerated(0.13) probably_damaging(0.996) TCGA-HU-8602-01 7 41730044 41730044 G T INHBA Missense_Mutation p.P162H 0.17 deleterious(0.05) probably_damaging(0.93) TCGA-HU-8602-01 7 41739728 41739728 G A INHBA Missense_Mutation p.A82V 0.27 deleterious(0) possibly_damaging(0.748) TCGA-HU-8602-01 7 41740042 41740042 T - INHBA 5'UTR 0.17 TCGA-HU-8602-01 7 42005606 42005606 G A GLI3 Missense_Mutation p.P1022L 0.18 deleterious(0.02) benign(0.069) TCGA-HU-8602-01 7 42063103 42063103 G A GLI3 Silent p.C487C 0.18 TCGA-HU-8602-01 7 44097420 44097420 A - DBNL Frame_Shift_Del p.R173Gfs*118 0.15 TCGA-HU-8602-01 7 44099737 44099737 T C DBNL Missense_Mutation p.Y389H 0.15 deleterious(0) probably_damaging(0.979) TCGA-HU-8602-01 7 44112814 44112814 A G POLM 3'UTR 0.19 TCGA-HU-8602-01 7 44152379 44152379 T C AEBP1 Missense_Mutation p.W814R 0.22 deleterious(0.01) probably_damaging(0.991) TCGA-HU-8602-01 7 44155802 44155802 G - POLD2 Frame_Shift_Del p.L311Sfs*39 0.19 TCGA-HU-8602-01 7 45141593 45141593 G A TBRG4 Silent p.P466P 0.14 TCGA-HU-8602-01 7 47385878 47385878 C T TNS3 Silent p.G786G 0.16 TCGA-HU-8602-01 7 47920397 47920397 G A PKD1L1 Missense_Mutation p.T1150I 0.25 tolerated(0.06) possibly_damaging(0.449) TCGA-HU-8602-01 7 48142893 48142893 G A UPP1 Splice_Site p.X108_splice 0.22 TCGA-HU-8602-01 7 48314041 48314041 T C ABCA13 Missense_Mutation p.V1593A 0.21 benign(0.108) TCGA-HU-8602-01 7 48563962 48563962 A G ABCA13 Missense_Mutation p.S4724G 0.14 possibly_damaging(0.82) TCGA-HU-8602-01 7 50513124 50513124 C T FIGNL1 Missense_Mutation p.R621H 0.32 deleterious(0) probably_damaging(0.998) TCGA-HU-8602-01 7 54610358 54610358 G A VSTM2A 5'UTR 0.19 TCGA-HU-8602-01 7 56130880 56130880 T - CCT6A 3'UTR 0.25 TCGA-HU-8602-01 7 5751450 5751450 G A RNF216 Missense_Mutation p.P668L 0.21 deleterious(0) probably_damaging(1) TCGA-HU-8602-01 7 6189484 6189484 G A USP42 Missense_Mutation p.V553I 0.18 tolerated(0.24) benign(0.24) TCGA-HU-8602-01 7 6449982 6449982 G A DAGLB Silent p.Y533Y 0.32 TCGA-HU-8602-01 7 66453242 66453242 C T SBDS 3'UTR 0.21 TCGA-HU-8602-01 7 66458338 66458338 T C SBDS Missense_Mutation p.R109G 0.24 deleterious(0) possibly_damaging(0.834) TCGA-HU-8602-01 7 70255416 70255416 C T AUTS2 Missense_Mutation p.R1072W 0.17 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-HU-8602-01 7 70255803 70255803 G A AUTS2 Missense_Mutation p.A1201T 0.20 tolerated(1) benign(0.004) TCGA-HU-8602-01 7 74299901 74299901 C T STAG3L2 RNA 0.27 TCGA-HU-8602-01 7 76033720 76033720 G T SRCRB4D Missense_Mutation p.L13M 0.15 deleterious_low_confidence(0.01) benign(0.003) TCGA-HU-8602-01 7 76058802 76058802 G A ZP3 Intron 0.22 TCGA-HU-8602-01 7 76109783 76109783 G T DTX2 5'UTR 0.21 TCGA-HU-8602-01 7 7612652 7612652 A G MIOS Silent p.G182G 0.27 TCGA-HU-8602-01 7 813802 813802 G A HEATR2 Silent p.A683A 0.12 TCGA-HU-8602-01 7 81637062 81637062 A G CACNA2D1 Missense_Mutation p.L458P 0.11 deleterious(0) probably_damaging(1) TCGA-HU-8602-01 7 86978480 86978480 A - CROT Frame_Shift_Del p.K34Nfs*13 0.12 TCGA-HU-8602-01 7 89856465 89856465 T - STEAP2 Frame_Shift_Del p.F227Sfs*9 0.30 TCGA-HU-8602-01 7 92021605 92021605 A G ANKIB1 Missense_Mutation p.E761G 0.27 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-HU-8602-01 7 92761060 92761061 - T SAMD9L Frame_Shift_Ins p.Q1409Tfs*49 0.25 TCGA-HU-8602-01 7 93540134 93540134 C T GNGT1 Silent p.Y43Y 0.22 TCGA-HU-8602-01 7 94168352 94168352 T C CASD1 Missense_Mutation p.I447T 0.17 tolerated(0.07) possibly_damaging(0.543) TCGA-HU-8602-01 7 94168365 94168365 T C CASD1 Silent p.S451S 0.31 TCGA-HU-8602-01 7 95019491 95019491 G T PON3 Missense_Mutation p.P59H 0.17 deleterious(0.01) probably_damaging(0.925) TCGA-HU-8602-01 7 99129068 99129068 T C ZKSCAN5 Silent p.T572T 0.21 TCGA-HU-8602-01 7 99655395 99655395 G A ZSCAN21 Silent p.P158P 0.25 TCGA-HU-8602-01 7 99709732 99709732 G A TAF6 Missense_Mutation p.A277V 0.19 tolerated(0.06) benign(0.118) TCGA-HU-8602-01 7 99754145 99754145 C T C7orf43 Silent p.P368P 0.23 TCGA-HU-8602-01 7 99950682 99950682 G A PILRB 5'UTR 0.16 TCGA-HU-8602-01 8 100861001 100861001 C T VPS13B Intron 0.11 TCGA-HU-8602-01 8 101146188 101146188 G T FBXO43 Missense_Mutation p.L657M 0.22 deleterious(0.02) possibly_damaging(0.643) TCGA-HU-8602-01 8 101154029 101154029 T - FBXO43 Frame_Shift_Del p.K151Nfs*8 0.16 TCGA-HU-8602-01 8 101253229 101253229 A - SPAG1 Frame_Shift_Del p.R922Gfs*9 0.11 TCGA-HU-8602-01 8 101730087 101730087 G A PABPC1 Silent p.G139G 0.12 TCGA-HU-8602-01 8 104413839 104413839 G A SLC25A32 Silent p.V239V 0.15 TCGA-HU-8602-01 8 10465175 10465175 A G RP1L1 Missense_Mutation p.S2145P 0.18 unknown(0) TCGA-HU-8602-01 8 10470245 10470245 G A RP1L1 Missense_Mutation p.P455S 0.16 benign(0.351) TCGA-HU-8602-01 8 104987622 104987622 G C RIMS2 Missense_Mutation p.V939L 0.12 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-HU-8602-01 8 105361777 105361777 G T DCSTAMP Missense_Mutation p.G333W 0.14 deleterious(0.01) probably_damaging(0.949) TCGA-HU-8602-01 8 108306229 108306229 T C ANGPT1 Missense_Mutation p.T325A 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-HU-8602-01 8 109260940 109260941 AG - EIF3E 5'UTR 0.12 TCGA-HU-8602-01 8 110477304 110477304 G A PKHD1L1 Missense_Mutation p.R2748H 0.13 deleterious(0.03) possibly_damaging(0.904) TCGA-HU-8602-01 8 110590246 110590246 C A SYBU Missense_Mutation p.R245S 0.11 tolerated(0.07) possibly_damaging(0.831) TCGA-HU-8602-01 8 118183307 118183308 AG - SLC30A8 Frame_Shift_Del p.E289Afs*47 0.10 TCGA-HU-8602-01 8 12040319 12040319 C T FAM86B1 3'UTR 0.09 TCGA-HU-8602-01 8 120886015 120886015 G A DEPTOR 5'UTR 0.23 TCGA-HU-8602-01 8 123964842 123964842 G A ZHX2 Silent p.T364T 0.11 TCGA-HU-8602-01 8 124371574 124371574 T C ATAD2 Silent p.V423V 0.11 TCGA-HU-8602-01 8 124799557 124799557 G A FAM91A1 Missense_Mutation p.A379T 0.17 deleterious(0) probably_damaging(0.985) TCGA-HU-8602-01 8 125078740 125078740 C T FER1L6 Silent p.N1209N 0.18 TCGA-HU-8602-01 8 125565518 125565518 G T MTSS1 Silent p.P661P 0.15 TCGA-HU-8602-01 8 126088707 126088707 T G KIAA0196 Silent p.T249T 0.11 TCGA-HU-8602-01 8 128428414 128428414 C T POU5F1B Silent p.V101V 0.16 TCGA-HU-8602-01 8 12957275 12957275 G A DLC1 Silent p.S857S 0.16 TCGA-HU-8602-01 8 130789698 130789698 G A GSDMC Missense_Mutation p.R46C 0.15 tolerated(0.2) benign(0.042) TCGA-HU-8602-01 8 133492426 133492426 C T KCNQ3 Silent p.P118P 0.13 TCGA-HU-8602-01 8 133623587 133623587 C T LRRC6 Missense_Mutation p.D333N 0.08 tolerated(0.09) benign(0.082) TCGA-HU-8602-01 8 134072364 134072364 C T SLA Silent p.R54R 0.13 TCGA-HU-8602-01 8 134256618 134256618 C T NDRG1 Missense_Mutation p.G291S 0.15 deleterious(0) probably_damaging(1) TCGA-HU-8602-01 8 135614640 135614640 G A ZFAT Missense_Mutation p.A441V 0.11 tolerated(0.08) probably_damaging(0.938) TCGA-HU-8602-01 8 139155273 139155273 A T FAM135B Missense_Mutation p.L1207H 0.14 deleterious(0) probably_damaging(0.998) TCGA-HU-8602-01 8 140630972 140630972 C T KCNK9 Silent p.P218P 0.10 TCGA-HU-8602-01 8 141297705 141297705 A G TRAPPC9 Splice_Site p.X759_splice 0.15 TCGA-HU-8602-01 8 141557663 141557665 TTC - AGO2 In_Frame_Del p.K550del 0.26 TCGA-HU-8602-01 8 141678425 141678425 G A PTK2 Silent p.I949I 0.16 TCGA-HU-8602-01 8 141727703 141727703 C T PTK2 Silent p.P712P 0.16 TCGA-HU-8602-01 8 142229029 142229031 AAG - SLC45A4 In_Frame_Del p.F186del 0.13 TCGA-HU-8602-01 8 144589967 144589967 G T ZC3H3 Missense_Mutation p.P555H 0.13 tolerated(0.22) benign(0.422) TCGA-HU-8602-01 8 144804319 144804319 G - MAPK15 Frame_Shift_Del p.G513Vfs*? 0.13 TCGA-HU-8602-01 8 144874388 144874388 A G SCRIB Splice_Site p.X1505_splice 0.24 TCGA-HU-8602-01 8 144877247 144877247 G A SCRIB Silent p.R1269R 0.15 TCGA-HU-8602-01 8 144886086 144886086 G A SCRIB Missense_Mutation p.R1049C 0.27 probably_damaging(0.975) TCGA-HU-8602-01 8 144898887 144898887 G T PUF60 Missense_Mutation p.R495S 0.16 deleterious(0) benign(0.011) TCGA-HU-8602-01 8 144942560 144942560 C T EPPK1 Missense_Mutation p.R1621Q 0.20 benign(0.012) TCGA-HU-8602-01 8 144990983 144990983 C T PLEC Missense_Mutation p.V4473I 0.14 possibly_damaging(0.545) TCGA-HU-8602-01 8 145057410 145057410 G A PARP10 Missense_Mutation p.R783C 0.12 deleterious(0.03) benign(0.138) TCGA-HU-8602-01 8 145135191 145135191 C T EXOSC4 Missense_Mutation p.A142V 0.12 tolerated(0.09) possibly_damaging(0.488) TCGA-HU-8602-01 8 145245797 145245797 G A MROH1 Missense_Mutation p.D225N 0.13 deleterious(0) possibly_damaging(0.545) TCGA-HU-8602-01 8 145616432 145616432 G T ADCK5 Silent p.V214V 0.11 TCGA-HU-8602-01 8 145624760 145624760 G A CPSF1 Missense_Mutation p.A433V 0.13 tolerated(0.21) benign(0.273) TCGA-HU-8602-01 8 145698104 145698104 G A KIFC2 Intron 0.19 TCGA-HU-8602-01 8 146032665 146032665 C A ZNF517 Missense_Mutation p.L122I 0.14 tolerated(0.41) benign(0.364) TCGA-HU-8602-01 8 1497246 1497246 G A DLGAP2 Silent p.T129T 0.24 TCGA-HU-8602-01 8 17611729 17611729 C T MTUS1 Missense_Mutation p.V530I 0.17 tolerated(0.21) benign(0.06) TCGA-HU-8602-01 8 17823525 17823525 C T PCM1 Missense_Mutation p.P958L 0.14 deleterious(0) benign(0.432) TCGA-HU-8602-01 8 19677153 19677153 C T INTS10 Silent p.N89N 0.10 TCGA-HU-8602-01 8 21958199 21958199 G A FAM160B2 Missense_Mutation p.R479H 0.09 deleterious(0) probably_damaging(0.968) TCGA-HU-8602-01 8 21973189 21973189 C T HR 3'UTR 0.20 TCGA-HU-8602-01 8 22005871 22005871 C A LGI3 Silent p.L483L 0.12 TCGA-HU-8602-01 8 22106824 22106824 T C POLR3D Splice_Site p.X307_splice 0.06 TCGA-HU-8602-01 8 22267554 22267554 C A SLC39A14 Missense_Mutation p.R185S 0.19 deleterious(0) probably_damaging(0.98) TCGA-HU-8602-01 8 22370819 22370819 C T PPP3CC Missense_Mutation p.T215M 0.13 deleterious(0.04) benign(0.011) TCGA-HU-8602-01 8 22472975 22472975 C - CCAR2 Frame_Shift_Del p.R417Gfs*89 0.15 TCGA-HU-8602-01 8 22874896 22874896 C T RHOBTB2 Missense_Mutation p.R722C 0.15 deleterious(0) possibly_damaging(0.772) TCGA-HU-8602-01 8 23299177 23299177 G A ENTPD4 Missense_Mutation p.R263C 0.19 deleterious(0.01) probably_damaging(0.982) TCGA-HU-8602-01 8 24811219 24811219 G A CTD-2168K21.2 5'Flank 0.15 TCGA-HU-8602-01 8 24813883 24813883 G T CTD-2168K21.2 5'Flank 0.12 TCGA-HU-8602-01 8 25253206 25253206 G A DOCK5 Missense_Mutation p.V1559I 0.10 deleterious(0) probably_damaging(0.996) TCGA-HU-8602-01 8 25257429 25257429 T - DOCK5 Frame_Shift_Del p.F1571Lfs*19 0.20 TCGA-HU-8602-01 8 25747347 25747347 G T EBF2 Silent p.V224V 0.13 TCGA-HU-8602-01 8 26722566 26722566 G A ADRA1A 5'UTR 0.18 TCGA-HU-8602-01 8 27145436 27145436 G A TRIM35 Silent p.G371G 0.14 TCGA-HU-8602-01 8 27145561 27145561 G A TRIM35 Missense_Mutation p.R330C 0.15 deleterious(0) probably_damaging(0.912) TCGA-HU-8602-01 8 27297913 27297913 A G PTK2B Missense_Mutation p.D665G 0.13 deleterious(0.01) benign(0.135) TCGA-HU-8602-01 8 27320707 27320707 T A CHRNA2 Missense_Mutation p.E418V 0.11 tolerated(0.18) benign(0.032) TCGA-HU-8602-01 8 27645493 27645493 A - ESCO2 Frame_Shift_Del p.T371Qfs*24 0.14 TCGA-HU-8602-01 8 27737278 27737278 C T SCARA5 Missense_Mutation p.V387M 0.18 tolerated(0.18) benign(0.004) TCGA-HU-8602-01 8 29007824 29007824 G T KIF13B Missense_Mutation p.H538N 0.15 deleterious(0) probably_damaging(0.996) TCGA-HU-8602-01 8 3046521 3046521 C A CSMD1 Missense_Mutation p.G1804V 0.20 probably_damaging(0.976) TCGA-HU-8602-01 8 30702408 30702408 G A TEX15 Nonsense_Mutation p.Q1376* 0.17 TCGA-HU-8602-01 8 30703828 30703828 G T TEX15 Missense_Mutation p.D902E 0.08 deleterious(0.02) benign(0.443) TCGA-HU-8602-01 8 30889409 30889409 C T PURG Missense_Mutation p.R297H 0.09 deleterious(0) probably_damaging(0.999) TCGA-HU-8602-01 8 3263662 3263662 G A CSMD1 Missense_Mutation p.S718L 0.22 probably_damaging(0.999) TCGA-HU-8602-01 8 33416236 33416236 G A RNF122 Missense_Mutation p.P27S 0.11 tolerated(0.64) benign(0.014) TCGA-HU-8602-01 8 35583979 35583980 - A UNC5D Frame_Shift_Ins p.R539Kfs*49 0.17 TCGA-HU-8602-01 8 37823915 37823915 C T ADRB3 Missense_Mutation p.A25T 0.23 tolerated(0.13) benign(0.103) TCGA-HU-8602-01 8 38008386 38008386 C T STAR 5'UTR 0.16 TCGA-HU-8602-01 8 38008392 38008392 T C STAR 5'UTR 0.14 TCGA-HU-8602-01 8 38065194 38065194 T G BAG4 Silent p.T181T 0.16 TCGA-HU-8602-01 8 38272116 38272116 T C FGFR1 Missense_Mutation p.E701G 0.11 deleterious(0) probably_damaging(0.998) TCGA-HU-8602-01 8 41542084 41542084 C T ANK1 Silent p.S1546S 0.11 TCGA-HU-8602-01 8 41791371 41791371 A G KAT6A Missense_Mutation p.L1456P 0.12 unknown(0) TCGA-HU-8602-01 8 41798364 41798364 C T KAT6A Missense_Mutation p.R1012Q 0.13 possibly_damaging(0.849) TCGA-HU-8602-01 8 42036571 42036583 GAAAGGAGACACT - PLAT Splice_Site p.X455_splice 0.21 TCGA-HU-8602-01 8 42611206 42611206 G A CHRNA6 Missense_Mutation p.A379V 0.18 tolerated(0.22) benign(0.003) TCGA-HU-8602-01 8 42692978 42692978 T A THAP1 3'UTR 0.36 TCGA-HU-8602-01 8 52322022 52322022 C T PXDNL Missense_Mutation p.R721Q 0.14 deleterious(0) benign(0.001) TCGA-HU-8602-01 8 52744035 52744035 A G PCMTD1 Silent p.N225N 0.15 TCGA-HU-8602-01 8 54163444 54163444 C G OPRK1 Missense_Mutation p.A52P 0.15 tolerated(0.32) benign(0.103) TCGA-HU-8602-01 8 54708293 54708293 G A ATP6V1H Missense_Mutation p.R262C 0.16 tolerated(0.06) benign(0.011) TCGA-HU-8602-01 8 54978307 54978307 C T LYPLA1 Splice_Site p.X56_splice 0.16 TCGA-HU-8602-01 8 55533673 55533673 C T RP1 Silent p.G49G 0.12 TCGA-HU-8602-01 8 55541306 55541306 G T RP1 Nonsense_Mutation p.E1622* 0.12 TCGA-HU-8602-01 8 57128986 57128987 TG - CHCHD7 Intron 0.10 TCGA-HU-8602-01 8 57354427 57354427 G A PENK Nonsense_Mutation p.Q70* 0.10 TCGA-HU-8602-01 8 57358454 57358454 G A PENK Missense_Mutation p.A20V 0.15 tolerated(0.52) benign(0.037) TCGA-HU-8602-01 8 61654516 61654516 G - CHD7 Frame_Shift_Del p.P178Lfs*33 0.20 TCGA-HU-8602-01 8 61765669 61765669 A - CHD7 Frame_Shift_Del p.N2130Tfs*14 0.21 TCGA-HU-8602-01 8 62465665 62465665 G A ASPH Silent p.S517S 0.16 TCGA-HU-8602-01 8 6366532 6366532 G A ANGPT2 Silent p.S417S 0.05 TCGA-HU-8602-01 8 67064625 67064625 A T TRIM55 Missense_Mutation p.E333D 0.21 tolerated(0.2) benign(0.002) TCGA-HU-8602-01 8 67547317 67547317 G C VCPIP1 Missense_Mutation p.H1030D 0.14 deleterious(0) probably_damaging(0.917) TCGA-HU-8602-01 8 68179131 68179131 G T ARFGEF1 Missense_Mutation p.P634H 0.11 deleterious(0) probably_damaging(0.996) TCGA-HU-8602-01 8 68213459 68213459 C A ARFGEF1 Missense_Mutation p.Q104H 0.14 deleterious(0) probably_damaging(0.998) TCGA-HU-8602-01 8 68396943 68396943 C T CPA6 Missense_Mutation p.V240I 0.14 tolerated(0.55) probably_damaging(0.97) TCGA-HU-8602-01 8 68421815 68421815 T C CPA6 Silent p.S157S 0.13 TCGA-HU-8602-01 8 71593234 71593234 T - XKR9 5'UTR 0.17 TCGA-HU-8602-01 8 72211324 72211324 G A EYA1 Missense_Mutation p.P262S 0.12 tolerated(0.43) possibly_damaging(0.897) TCGA-HU-8602-01 8 72754719 72754719 C T MSC 3'UTR 0.18 TCGA-HU-8602-01 8 73479985 73479985 C - KCNB2 Frame_Shift_Del p.P7Rfs*3 0.09 TCGA-HU-8602-01 8 75737735 75737735 C T PI15 Missense_Mutation p.P84L 0.13 deleterious(0) probably_damaging(0.999) TCGA-HU-8602-01 8 77766976 77766976 C T ZFHX4 Missense_Mutation p.R2607C 0.18 probably_damaging(0.995) TCGA-HU-8602-01 8 77775799 77775799 G - ZFHX4 Frame_Shift_Del p.G3285Dfs*68 0.09 TCGA-HU-8602-01 8 77895611 77895611 A G PEX2 Silent p.A268A 0.16 TCGA-HU-8602-01 8 79609706 79609706 T C ZC2HC1A Missense_Mutation p.L190S 0.19 deleterious(0) probably_damaging(0.992) TCGA-HU-8602-01 8 79629706 79629706 G A ZC2HC1A Missense_Mutation p.G319D 0.14 deleterious(0) probably_damaging(1) TCGA-HU-8602-01 8 80677870 80677870 C T HEY1 Silent p.S160S 0.15 TCGA-HU-8602-01 8 80677994 80677994 G A HEY1 Missense_Mutation p.A119V 0.17 deleterious(0.02) probably_damaging(0.961) TCGA-HU-8602-01 8 81605280 81605280 G A ZNF704 Missense_Mutation p.S95L 0.16 deleterious(0) probably_damaging(0.999) TCGA-HU-8602-01 8 8176405 8176405 G A SGK223 Silent p.P1160P 0.25 TCGA-HU-8602-01 8 8234430 8234430 C - SGK223 Frame_Shift_Del p.V497Cfs*8 0.13 TCGA-HU-8602-01 8 82373717 82373717 A G FABP9 Silent p.S14S 0.11 TCGA-HU-8602-01 8 82588515 82588516 - T IMPA1 Splice_Site p.X160_splice 0.13 TCGA-HU-8602-01 8 86114407 86114407 A - E2F5 Frame_Shift_Del p.R89Gfs*10 0.12 TCGA-HU-8602-01 8 86171714 86171714 C T CA13 Silent p.S100S 0.12 TCGA-HU-8602-01 8 88296993 88296993 G A CNBD1 Missense_Mutation p.D287N 0.13 tolerated(0.05) benign(0.399) TCGA-HU-8602-01 8 89068388 89068388 G A MMP16 Silent p.D447D 0.10 TCGA-HU-8602-01 8 8998163 8998163 T C PPP1R3B 3'UTR 0.20 TCGA-HU-8602-01 8 91095086 91095086 G A CALB1 5'UTR 0.38 TCGA-HU-8602-01 8 92090768 92090768 T G OTUD6B Missense_Mutation p.L197R 0.24 deleterious(0) probably_damaging(1) TCGA-HU-8602-01 8 92998502 92998502 C T RUNX1T1 Missense_Mutation p.V388I 0.21 tolerated(0.28) possibly_damaging(0.556) TCGA-HU-8602-01 8 9413606 9413606 C A TNKS Missense_Mutation p.L53M 0.12 deleterious_low_confidence(0) unknown(0) TCGA-HU-8602-01 8 95892358 95892358 G A INTS8 Missense_Mutation p.G962S 0.14 tolerated(0.12) probably_damaging(0.999) TCGA-HU-8602-01 8 97251915 97251915 T C MTERFD1 Splice_Site p.X354_splice 0.12 TCGA-HU-8602-01 8 99560281 99560281 G T STK3 Missense_Mutation p.H381N 0.09 tolerated(0.15) benign(0.008) TCGA-HU-8602-01 9 100249529 100249529 C T TDRD7 Silent p.H997H 0.20 TCGA-HU-8602-01 9 101540525 101540525 G T ANKS6 Missense_Mutation p.P517H 0.35 tolerated(0.63) benign(0.001) TCGA-HU-8602-01 9 103002432 103002432 G A INVS Missense_Mutation p.V236M 0.21 deleterious(0) probably_damaging(0.994) TCGA-HU-8602-01 9 103204464 103204464 A - MSANTD3 Frame_Shift_Del p.I84Lfs*10 0.13 TCGA-HU-8602-01 9 106885501 106885501 A - SMC2 Frame_Shift_Del p.T751Pfs*9 0.17 TCGA-HU-8602-01 9 107618220 107618220 G A ABCA1 Intron 0.16 TCGA-HU-8602-01 9 110249393 110249393 C T KLF4 Missense_Mutation p.A394T 0.25 deleterious(0) benign(0.152) TCGA-HU-8602-01 9 111899876 111899876 C T FRRS1L Silent p.P298P 0.23 TCGA-HU-8602-01 9 112141873 112141873 T C PTPN3 Missense_Mutation p.Y902C 0.31 deleterious(0) benign(0.005) TCGA-HU-8602-01 9 114304406 114304406 A G ZNF483 Missense_Mutation p.I397M 0.29 tolerated(0.09) benign(0.308) TCGA-HU-8602-01 9 115651926 115651926 G A SLC46A2 Missense_Mutation p.R346W 0.09 deleterious(0.01) possibly_damaging(0.906) TCGA-HU-8602-01 9 116812495 116812495 A - ZNF618 3'UTR 0.23 TCGA-HU-8602-01 9 117104360 117104360 G A AKNA Missense_Mutation p.T1268I 0.27 deleterious(0.01) benign(0.215) TCGA-HU-8602-01 9 119460614 119460614 A G TRIM32 Missense_Mutation p.E198G 0.17 tolerated(0.07) probably_damaging(0.994) TCGA-HU-8602-01 9 123907626 123907626 T C CNTRL Silent p.I1091I 0.21 TCGA-HU-8602-01 9 125141066 125141066 T G PTGS1 Missense_Mutation p.L122R 0.28 deleterious(0.04) benign(0.056) TCGA-HU-8602-01 9 125154761 125154761 C T PTGS1 Missense_Mutation p.R580C 0.25 deleterious(0.02) possibly_damaging(0.849) TCGA-HU-8602-01 9 125582522 125582522 G A PDCL Missense_Mutation p.R250C 0.20 deleterious(0) probably_damaging(0.999) TCGA-HU-8602-01 9 125673316 125673316 G A ZBTB6 Nonsense_Mutation p.R346* 0.26 TCGA-HU-8602-01 9 126125459 126125459 G T CRB2 Missense_Mutation p.G137V 0.19 deleterious(0) unknown(0) TCGA-HU-8602-01 9 12821554 12821554 G A LURAP1L Missense_Mutation p.R161H 0.27 tolerated(0.17) benign(0.002) TCGA-HU-8602-01 9 130191185 130191185 A G ZNF79 Missense_Mutation p.T31A 0.21 tolerated(0.7) benign(0) TCGA-HU-8602-01 9 130207427 130207427 G A ZNF79 Missense_Mutation p.R483Q 0.22 deleterious(0.05) probably_damaging(0.946) TCGA-HU-8602-01 9 130653012 130653012 G A ST6GALNAC6 Missense_Mutation p.A203V 0.25 benign(0.004) TCGA-HU-8602-01 9 131455933 131455933 C T SET Missense_Mutation p.S183L 0.30 tolerated(0.16) benign(0.219) TCGA-HU-8602-01 9 131475348 131475348 C A PKN3 Missense_Mutation p.L285I 0.19 tolerated(0.12) probably_damaging(0.996) TCGA-HU-8602-01 9 131670480 131670480 G A LRRC8A Missense_Mutation p.R346H 0.27 tolerated(0.06) probably_damaging(0.987) TCGA-HU-8602-01 9 133755916 133755916 G A ABL1 Missense_Mutation p.V534I 0.31 tolerated(0.19) benign(0.013) TCGA-HU-8602-01 9 133901842 133901842 G A LAMC3 Missense_Mutation p.G182S 0.28 deleterious(0) probably_damaging(0.999) TCGA-HU-8602-01 9 133928327 133928327 C T LAMC3 Silent p.R638R 0.12 TCGA-HU-8602-01 9 135772951 135772951 T - TSC1 Frame_Shift_Del p.N891Tfs*40 0.20 TCGA-HU-8602-01 9 137313626 137313626 C T RXRA Silent p.D295D 0.16 TCGA-HU-8602-01 9 137622298 137622298 G A COL5A1 Missense_Mutation p.A381T 0.24 benign(0.02) TCGA-HU-8602-01 9 138377324 138377324 C - PPP1R26 Frame_Shift_Del p.C325Afs*27 0.21 TCGA-HU-8602-01 9 138378033 138378033 G A PPP1R26 Silent p.P559P 0.22 TCGA-HU-8602-01 9 138825193 138825193 C T UBAC1 3'UTR 0.20 TCGA-HU-8602-01 9 139393380 139393380 C A NOTCH1 Missense_Mutation p.G2051W 0.24 deleterious(0) probably_damaging(1) TCGA-HU-8602-01 9 139566868 139566868 C A EGFL7 3'UTR 0.20 TCGA-HU-8602-01 9 139616704 139616704 G - FAM69B Frame_Shift_Del p.G146Afs*10 0.24 TCGA-HU-8602-01 9 139726288 139726288 C T RABL6 Missense_Mutation p.R192C 0.17 deleterious(0) probably_damaging(0.981) TCGA-HU-8602-01 9 139741054 139741054 G A C9orf172 Missense_Mutation p.G730S 0.15 tolerated(0.88) benign(0.003) TCGA-HU-8602-01 9 140137440 140137440 T C TUBB4B Missense_Mutation p.M257T 0.17 deleterious_low_confidence(0.03) benign(0.264) TCGA-HU-8602-01 9 140137949 140137949 G A TUBB4B Missense_Mutation p.D427N 0.24 tolerated_low_confidence(0.08) possibly_damaging(0.539) TCGA-HU-8602-01 9 17135073 17135073 C T CNTLN Missense_Mutation p.R4C 0.38 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-HU-8602-01 9 18777173 18777173 G A ADAMTSL1 Silent p.A982A 0.24 TCGA-HU-8602-01 9 26984355 26984355 T C IFT74 Splice_Site p.X135_splice 0.25 TCGA-HU-8602-01 9 33675379 33675379 C A PTENP1 RNA 0.18 TCGA-HU-8602-01 9 33927049 33927049 C - UBAP2 Frame_Shift_Del p.V801Cfs*11 0.21 TCGA-HU-8602-01 9 33935767 33935767 A G UBAP2 Intron 0.26 TCGA-HU-8602-01 9 33996302 33996302 A G UBAP2 Silent p.D69D 0.21 TCGA-HU-8602-01 9 34098435 34098435 G A DCAF12 Missense_Mutation p.R228W 0.29 deleterious(0.01) benign(0.232) TCGA-HU-8602-01 9 34491509 34491509 C T DNAI1 Missense_Mutation p.T213M 0.20 tolerated(0.25) benign(0.144) TCGA-HU-8602-01 9 34648866 34648866 T C GALT Silent p.P265P 0.20 TCGA-HU-8602-01 9 35719202 35719202 G A TLN1 Missense_Mutation p.R589C 0.22 deleterious(0) possibly_damaging(0.526) TCGA-HU-8602-01 9 36357922 36357922 G A RNF38 Silent p.V196V 0.19 TCGA-HU-8602-01 9 36671000 36671000 G A MELK Missense_Mutation p.R504H 0.14 tolerated(0.27) benign(0.012) TCGA-HU-8602-01 9 3856161 3856161 G A GLIS3 Missense_Mutation p.P774L 0.27 deleterious(0) probably_damaging(0.999) TCGA-HU-8602-01 9 5339637 5339637 C T RLN1 Missense_Mutation p.R37H 0.26 deleterious(0.01) possibly_damaging(0.839) TCGA-HU-8602-01 9 70993145 70993145 A G PGM5 Missense_Mutation p.I98V 0.09 deleterious(0.01) possibly_damaging(0.573) TCGA-HU-8602-01 9 71831301 71831301 A C TJP2 Missense_Mutation p.N85T 0.22 deleterious(0) probably_damaging(0.998) TCGA-HU-8602-01 9 71866280 71866280 G T TJP2 Missense_Mutation p.R1138S 0.24 tolerated(0.06) possibly_damaging(0.598) TCGA-HU-8602-01 9 742369 742369 G A KANK1 Silent p.L1287L 0.27 TCGA-HU-8602-01 9 77353400 77353400 A C TRPM6 Missense_Mutation p.L1900R 0.25 deleterious(0) probably_damaging(1) TCGA-HU-8602-01 9 79320305 79320305 G A PRUNE2 Silent p.S2295S 0.14 TCGA-HU-8602-01 9 86617331 86617331 G A RMI1 Missense_Mutation p.S477N 0.20 tolerated(0.62) benign(0) TCGA-HU-8602-01 9 88257780 88257780 A G AGTPBP1 Missense_Mutation p.Y382H 0.16 deleterious(0.04) probably_damaging(0.997) TCGA-HU-8602-01 9 89560899 89560899 C T GAS1 Missense_Mutation p.D266N 0.19 deleterious(0.03) possibly_damaging(0.821) TCGA-HU-8602-01 9 90589374 90589374 G A CDK20 5'UTR 0.14 TCGA-HU-8602-01 9 94495526 94495526 C T ROR2 Missense_Mutation p.R272H 0.15 deleterious(0) probably_damaging(0.993) TCGA-HU-8602-01 9 95576331 95576331 T C ANKRD19P Splice_Site 0.21 TCGA-HU-8602-01 9 95784613 95784613 C T FGD3 Missense_Mutation p.T500M 0.23 tolerated(0.33) benign(0.009) TCGA-HU-8602-01 9 95888893 95888893 G A NINJ1 Missense_Mutation p.P35S 0.25 tolerated(0.14) probably_damaging(0.968) TCGA-HU-8602-01 9 977137 977137 C T DMRT3 Missense_Mutation p.R46C 0.20 deleterious(0) probably_damaging(0.999) TCGA-HU-8602-01 9 98215807 98215807 C T PTCH1 Silent p.L1134L 0.20 TCGA-HU-8602-01 9 98239083 98239083 G A PTCH1 Silent p.H520H 0.16 TCGA-HU-8602-01 9 99607190 99607190 T C ZNF782 Missense_Mutation p.S42G 0.16 tolerated(0.05) benign(0.019) TCGA-HU-8602-01 X 100662741 100662741 T C GLA Missense_Mutation p.M51V 0.04 tolerated(0.27) benign(0.011) TCGA-HU-8602-01 X 100668112 100668112 T - HNRNPH2 Frame_Shift_Del p.L381* 0.18 TCGA-HU-8602-01 X 10077879 10077879 G A WWC3 Missense_Mutation p.E265K 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-HU-8602-01 X 101139736 101139747 TTGGTAAGAGTC - ZMAT1 In_Frame_Del p.D218_Q221del 0.15 TCGA-HU-8602-01 X 101912652 101912653 CA - GPRASP1 Frame_Shift_Del p.L1273Gfs*32 0.19 TCGA-HU-8602-01 X 103045491 103045491 G A PLP1 Missense_Mutation p.V267I 0.19 tolerated(0.21) benign(0.025) TCGA-HU-8602-01 X 107827718 107827718 A - COL4A5 Frame_Shift_Del p.G334Vfs*12 0.24 TCGA-HU-8602-01 X 107938087 107938087 C T COL4A5 Missense_Mutation p.T1586M 0.21 probably_damaging(0.999) TCGA-HU-8602-01 X 107976681 107976681 C G IRS4 Missense_Mutation p.G965A 0.21 tolerated(0.08) unknown(0) TCGA-HU-8602-01 X 108906627 108906627 A G ACSL4 Silent p.G506G 0.27 TCGA-HU-8602-01 X 109694182 109694182 C T RGAG1 Silent p.L113L 0.24 TCGA-HU-8602-01 X 109924728 109924728 C T CHRDL1 Missense_Mutation p.V380I 0.25 tolerated(0.58) benign(0.064) TCGA-HU-8602-01 X 110925365 110925365 C T ALG13 Silent p.I29I 0.22 TCGA-HU-8602-01 X 11187743 11187743 T C ARHGAP6 Missense_Mutation p.H564R 0.24 deleterious(0.03) possibly_damaging(0.842) TCGA-HU-8602-01 X 112024224 112024224 A G AMOT Missense_Mutation p.L788P 0.20 unknown(0) TCGA-HU-8602-01 X 114953625 114953625 G A RP1-241P17.4 5'UTR 0.44 TCGA-HU-8602-01 X 117512387 117512387 C A WDR44 Missense_Mutation p.P28Q 0.20 deleterious_low_confidence(0) benign(0.302) TCGA-HU-8602-01 X 118147118 118147118 G A LONRF3 Missense_Mutation p.R643Q 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-HU-8602-01 X 118724535 118724535 G A NKRF Missense_Mutation p.R300W 0.23 deleterious(0) probably_damaging(1) TCGA-HU-8602-01 X 119389084 119389084 G A ZBTB33 Missense_Mutation p.S605N 0.18 tolerated(1) benign(0.001) TCGA-HU-8602-01 X 119603121 119603121 T G LAMP2 5'UTR 0.43 TCGA-HU-8602-01 X 120009305 120009305 C T CT47B1 Missense_Mutation p.A74T 0.26 tolerated(0.39) benign(0.031) TCGA-HU-8602-01 X 123615689 123615689 T A TENM1 Missense_Mutation p.K1281M 0.16 deleterious(0.03) possibly_damaging(0.763) TCGA-HU-8602-01 X 125299723 125299723 G A DCAF12L2 Missense_Mutation p.A62V 0.17 tolerated(0.32) benign(0.017) TCGA-HU-8602-01 X 125685267 125685267 T G DCAF12L1 Missense_Mutation p.K442T 0.17 deleterious(0) probably_damaging(0.979) TCGA-HU-8602-01 X 131762995 131762995 G A HS6ST2 Silent p.S398S 0.19 TCGA-HU-8602-01 X 135314194 135314194 G - MAP7D3 Frame_Shift_Del p.Q308Rfs*2 0.20 TCGA-HU-8602-01 X 135318440 135318440 C T MAP7D3 Silent p.S233S 0.15 TCGA-HU-8602-01 X 136113787 136113787 T C GPR101 Missense_Mutation p.H16R 0.30 tolerated_low_confidence(0.19) benign(0.002) TCGA-HU-8602-01 X 138678734 138678734 A G MCF2 Missense_Mutation p.S827P 0.19 deleterious(0.01) probably_damaging(0.992) TCGA-HU-8602-01 X 140993325 140993325 C T MAGEC1 Silent p.D45D 0.20 TCGA-HU-8602-01 X 148037280 148037280 C T AFF2 Nonsense_Mutation p.Q569* 0.21 TCGA-HU-8602-01 X 148037653 148037655 AGA - AFF2 In_Frame_Del p.K696del 0.18 TCGA-HU-8602-01 X 149671788 149671788 G C MAMLD1 Intron 0.27 TCGA-HU-8602-01 X 149983348 149983348 A G CD99L2 Silent p.G88G 0.26 TCGA-HU-8602-01 X 151870140 151870140 C T MAGEA6 Missense_Mutation p.A277V 0.27 deleterious(0.01) probably_damaging(0.991) TCGA-HU-8602-01 X 152835118 152835118 C T ATP2B3 Intron 0.21 TCGA-HU-8602-01 X 153070218 153070218 G A PDZD4 Silent p.D300D 0.26 TCGA-HU-8602-01 X 153137620 153137620 C T L1CAM Silent p.R129R 0.19 TCGA-HU-8602-01 X 153295707 153295707 T - MECP2 3'UTR 0.21 TCGA-HU-8602-01 X 15349840 15349840 G A PIGA Silent p.T71T 0.25 TCGA-HU-8602-01 X 153628830 153628830 T C RPL10 Missense_Mutation p.F119L 0.24 deleterious(0.01) benign(0.061) TCGA-HU-8602-01 X 154507295 154507295 C T CLIC2 Missense_Mutation p.R214H 0.22 deleterious(0.02) probably_damaging(1) TCGA-HU-8602-01 X 15845479 15845479 C T AP1S2 Missense_Mutation p.R148H 0.22 tolerated(0.12) benign(0.001) TCGA-HU-8602-01 X 1712982 1712983 - G AKAP17A Frame_Shift_Ins p.H212Afs*47 0.25 TCGA-HU-8602-01 X 18221769 18221769 A G BEND2 Silent p.A253A 0.26 TCGA-HU-8602-01 X 18923920 18923920 A G PHKA2 Missense_Mutation p.L955P 0.18 deleterious(0) probably_damaging(0.996) TCGA-HU-8602-01 X 19028804 19028804 C T GPR64 Missense_Mutation p.A398T 0.21 tolerated(0.08) probably_damaging(0.984) TCGA-HU-8602-01 X 21875040 21875040 C T YY2 Silent p.S146S 0.20 TCGA-HU-8602-01 X 21875629 21875629 T C YY2 Missense_Mutation p.C343R 0.22 deleterious(0) probably_damaging(1) TCGA-HU-8602-01 X 24006014 24006015 - T KLHL15 3'UTR 0.27 TCGA-HU-8602-01 X 24006748 24006748 G A KLHL15 Missense_Mutation p.R369C 0.25 deleterious(0) probably_damaging(0.995) TCGA-HU-8602-01 X 2408490 2408490 C T ZBED1 Missense_Mutation p.A91T 0.19 tolerated(0.18) probably_damaging(0.997) TCGA-HU-8602-01 X 2856237 2856237 G A ARSE Silent p.P396P 0.17 TCGA-HU-8602-01 X 30269562 30269562 C T MAGEB1 Nonsense_Mutation p.R318* 0.23 TCGA-HU-8602-01 X 31198593 31198593 C A DMD Missense_Mutation p.R3327M 0.18 possibly_damaging(0.702) TCGA-HU-8602-01 X 32536003 32536003 T C DMD Intron 0.40 TCGA-HU-8602-01 X 3261813 3261813 G A MXRA5 Missense_Mutation p.P21L 0.29 deleterious(0) possibly_damaging(0.804) TCGA-HU-8602-01 X 34962518 34962518 C T FAM47B Missense_Mutation p.R524W 0.25 deleterious(0) possibly_damaging(0.648) TCGA-HU-8602-01 X 3544540 3544540 A - PRKX Frame_Shift_Del p.F245Lfs*17 0.17 TCGA-HU-8602-01 X 37027784 37027784 G A FAM47C Missense_Mutation p.R434H 0.26 tolerated_low_confidence(0.28) possibly_damaging(0.869) TCGA-HU-8602-01 X 41060361 41060361 G A USP9X Missense_Mutation p.R1551H 0.17 deleterious(0) benign(0.186) TCGA-HU-8602-01 X 41202520 41202520 C T DDX3X Missense_Mutation p.R199C 0.23 deleterious(0) benign(0.016) TCGA-HU-8602-01 X 44879906 44879906 A C KDM6A Silent p.R165R 0.26 TCGA-HU-8602-01 X 47028858 47028858 G T RBM10 Missense_Mutation p.K54N 0.21 tolerated(0.28) benign(0.003) TCGA-HU-8602-01 X 47307606 47307606 T G ZNF41 Missense_Mutation p.K521N 0.11 deleterious(0.03) probably_damaging(0.999) TCGA-HU-8602-01 X 47509864 47509865 - G ELK1 5'UTR 0.19 TCGA-HU-8602-01 X 48206431 48206431 G A SSX3 3'UTR 0.20 TCGA-HU-8602-01 X 48826003 48826003 G A KCND1 Missense_Mutation p.R226C 0.16 deleterious(0) possibly_damaging(0.772) TCGA-HU-8602-01 X 49086760 49086760 C T CACNA1F Missense_Mutation p.V247I 0.21 deleterious(0) probably_damaging(0.999) TCGA-HU-8602-01 X 49142794 49142794 G A PPP1R3F Missense_Mutation p.A548T 0.42 deleterious_low_confidence(0.01) possibly_damaging(0.889) TCGA-HU-8602-01 X 50350731 50350731 C T SHROOM4 Silent p.E1137E 0.32 TCGA-HU-8602-01 X 50377272 50377272 C T SHROOM4 Missense_Mutation p.A601T 0.09 deleterious(0) probably_damaging(0.998) TCGA-HU-8602-01 X 51151130 51151130 T C CXorf67 Missense_Mutation p.I421T 0.17 deleterious(0.04) possibly_damaging(0.451) TCGA-HU-8602-01 X 51239179 51239179 G A NUDT11 Missense_Mutation p.R40W 0.21 deleterious(0) probably_damaging(0.961) TCGA-HU-8602-01 X 53105735 53105735 C - GPR173 5'UTR 0.28 TCGA-HU-8602-01 X 53575177 53575177 G A HUWE1 Missense_Mutation p.R3365W 0.12 possibly_damaging(0.689) TCGA-HU-8602-01 X 53643948 53643950 CTC - HUWE1 In_Frame_Del p.R647del 0.21 TCGA-HU-8602-01 X 54209078 54209078 C A FAM120C Missense_Mutation p.R185L 0.14 tolerated(0.1) benign(0.03) TCGA-HU-8602-01 X 55514297 55514297 G A USP51 Missense_Mutation p.T359I 0.22 deleterious(0.04) possibly_damaging(0.483) TCGA-HU-8602-01 X 57146187 57146187 G T SPIN2B 3'UTR 0.19 TCGA-HU-8602-01 X 5827119 5827119 A G NLGN4X Silent p.L263L 0.23 TCGA-HU-8602-01 X 63412443 63412443 T A AMER1 Missense_Mutation p.T242S 0.27 tolerated(0.25) benign(0.007) TCGA-HU-8602-01 X 70604865 70604865 T A TAF1 Missense_Mutation p.F751Y 0.19 deleterious(0) probably_damaging(0.998) TCGA-HU-8602-01 X 70608209 70608209 C T TAF1 Silent p.C870C 0.18 TCGA-HU-8602-01 X 73040725 73040725 A G XIST RNA 0.17 TCGA-HU-8602-01 X 73815739 73815739 C T RLIM Missense_Mutation p.R25Q 0.20 tolerated(0.11) unknown(0) TCGA-HU-8602-01 X 77131013 77131013 G A MAGT1 Missense_Mutation p.R94C 0.19 deleterious(0) probably_damaging(0.921) TCGA-HU-8602-01 X 79282759 79282759 C T TBX22 Missense_Mutation p.T268M 0.19 deleterious(0) probably_damaging(0.997) TCGA-HU-8602-01 X 82763700 82763700 C T POU3F4 Missense_Mutation p.S123F 0.14 tolerated(0.12) benign(0.197) TCGA-HU-8602-01 X 8553428 8553428 C T KAL1 Missense_Mutation p.E246K 0.11 tolerated(0.05) benign(0.32) TCGA-HU-8602-01 X 86880677 86880677 A G KLHL4 Missense_Mutation p.E402G 0.13 deleterious(0) probably_damaging(0.986) TCGA-HU-8604-01 10 103919306 103919306 A C NOLC1 Missense_Mutation p.K280N 0.15 deleterious_low_confidence(0.01) benign(0.403) TCGA-HU-8604-01 10 118084562 118084562 C T CCDC172 Silent p.T13T 0.12 TCGA-HU-8604-01 10 30656738 30656738 G A AL161651.1 5'Flank 0.17 TCGA-HU-8604-01 10 30749642 30749642 G A MAP3K8 Silent p.S427S 0.10 TCGA-HU-8604-01 10 428632 428632 C T DIP2C Missense_Mutation p.C649Y 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-HU-8604-01 10 55955568 55955568 A G PCDH15 Missense_Mutation p.Y394H 0.10 deleterious(0.04) probably_damaging(0.98) TCGA-HU-8604-01 10 71899649 71899649 C T TYSND1 3'UTR 0.09 TCGA-HU-8604-01 10 7679382 7679382 G A ITIH5 Missense_Mutation p.A154V 0.15 tolerated(0.74) benign(0.003) TCGA-HU-8604-01 10 99216685 99216685 T G ZDHHC16 3'UTR 0.29 TCGA-HU-8604-01 10 99770980 99770980 A G CRTAC1 Missense_Mutation p.Y47H 0.12 tolerated_low_confidence(0.06) benign(0.011) TCGA-HU-8604-01 11 100933339 100933339 A T PGR Missense_Mutation p.I684N 0.11 tolerated(0.06) benign(0.218) TCGA-HU-8604-01 11 106810753 106810753 A G GUCY1A2 Silent p.S213S 0.12 TCGA-HU-8604-01 11 117866365 117866365 C T IL10RA Silent p.L250L 0.18 TCGA-HU-8604-01 11 118765000 118765000 G A CXCR5 Silent p.Q249Q 0.14 TCGA-HU-8604-01 11 120998532 120998532 G A TECTA Missense_Mutation p.D616N 0.19 tolerated(0.2) possibly_damaging(0.643) TCGA-HU-8604-01 11 123778075 123778075 C T OR8D4 Missense_Mutation p.P313S 0.18 tolerated_low_confidence(0.68) benign(0.005) TCGA-HU-8604-01 11 2185600 2185600 G A TH Missense_Mutation p.R484C 0.29 deleterious(0) probably_damaging(0.997) TCGA-HU-8604-01 11 26581277 26581277 G A ANO3 Silent p.L466L 0.12 TCGA-HU-8604-01 11 34226232 34226232 G T ABTB2 Missense_Mutation p.L297I 0.14 deleterious(0.02) probably_damaging(0.991) TCGA-HU-8604-01 11 5530452 5530452 T C UBQLN3 Missense_Mutation p.S113G 0.21 tolerated(0.17) benign(0.005) TCGA-HU-8604-01 11 55340006 55340006 A C OR4C16 Missense_Mutation p.S135R 0.14 tolerated(0.34) benign(0.342) TCGA-HU-8604-01 11 5537480 5537480 T C UBQLNL Silent p.Q64Q 0.08 TCGA-HU-8604-01 11 55406228 55406228 T G OR4P4 Missense_Mutation p.I132S 0.12 tolerated(0.07) benign(0.006) TCGA-HU-8604-01 11 55999981 55999981 A C OR5T2 Silent p.S227S 0.20 TCGA-HU-8604-01 11 60184378 60184378 C A MS4A14 Missense_Mutation p.S679Y 0.16 tolerated(1) benign(0.199) TCGA-HU-8604-01 11 61079287 61079287 G A DDB1 Missense_Mutation p.T749M 0.22 tolerated(0.22) benign(0.003) TCGA-HU-8604-01 11 65387389 65387389 T G PCNXL3 Missense_Mutation p.F665C 0.21 deleterious(0) probably_damaging(0.94) TCGA-HU-8604-01 11 73008084 73008084 G A P2RY6 Missense_Mutation p.R174H 0.09 tolerated(0.05) probably_damaging(1) TCGA-HU-8604-01 11 94278700 94278700 C A FUT4 Silent p.S467S 0.16 TCGA-HU-8604-01 12 108013802 108013802 G A BTBD11 Missense_Mutation p.R831Q 0.29 deleterious(0.03) probably_damaging(0.929) TCGA-HU-8604-01 12 11061719 11061719 C A TAS2R13 Missense_Mutation p.W60L 0.14 deleterious(0) probably_damaging(0.967) TCGA-HU-8604-01 12 122975087 122975087 A T ZCCHC8 Missense_Mutation p.F115L 0.22 deleterious(0.04) probably_damaging(0.985) TCGA-HU-8604-01 12 126139127 126139127 C T TMEM132B Silent p.D1036D 0.18 TCGA-HU-8604-01 12 20766614 20766614 G C PDE3A Missense_Mutation p.D417H 0.08 tolerated(0.07) possibly_damaging(0.707) TCGA-HU-8604-01 12 21011495 21011495 T G LST3 Missense_Mutation p.F117V 0.17 deleterious(0) probably_damaging(0.985) TCGA-HU-8604-01 12 21602575 21602575 T C PYROXD1 Missense_Mutation p.C122R 0.19 tolerated(0.48) benign(0.001) TCGA-HU-8604-01 12 2622033 2622033 C T CACNA1C Missense_Mutation p.R425W 0.23 deleterious(0) probably_damaging(1) TCGA-HU-8604-01 12 40714877 40714877 A T LRRK2 Missense_Mutation p.E1686V 0.07 deleterious(0) probably_damaging(0.953) TCGA-HU-8604-01 12 49579760 49579760 G A TUBA1A Missense_Mutation p.T130M 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.767) TCGA-HU-8604-01 12 52448549 52448549 T G NR4A1 Missense_Mutation p.F159C 0.21 deleterious(0.02) benign(0.371) TCGA-HU-8604-01 12 53186067 53186067 C T KRT3 Missense_Mutation p.A382T 0.27 tolerated(0.06) possibly_damaging(0.572) TCGA-HU-8604-01 12 55688654 55688654 G A OR6C6 Silent p.Y121Y 0.20 TCGA-HU-8604-01 12 56384549 56384549 C - RAB5B Frame_Shift_Del p.N133Kfs*36 0.18 TCGA-HU-8604-01 12 75601257 75601257 G A KCNC2 Silent p.F169F 0.16 TCGA-HU-8604-01 12 81532956 81532956 G T ACSS3 Missense_Mutation p.R231M 0.20 deleterious(0.02) benign(0.203) TCGA-HU-8604-01 12 82747029 82747029 C A CCDC59 Missense_Mutation p.M209I 0.08 deleterious(0.03) possibly_damaging(0.755) TCGA-HU-8604-01 12 95927656 95927656 C T USP44 Missense_Mutation p.G126D 0.11 tolerated(0.79) benign(0.001) TCGA-HU-8604-01 13 21217687 21217689 AGG - IFT88 In_Frame_Del p.G602del 0.30 TCGA-HU-8604-01 13 22095431 22095431 G C MICU2 Missense_Mutation p.L184V 0.20 deleterious(0.01) probably_damaging(0.99) TCGA-HU-8604-01 13 24190051 24190051 C T TNFRSF19 Missense_Mutation p.R76W 0.34 deleterious(0.02) benign(0.139) TCGA-HU-8604-01 13 32365959 32365959 C T RXFP2 Nonsense_Mutation p.R388* 0.27 TCGA-HU-8604-01 13 46541793 46541793 G A ZC3H13 Silent p.R1389R 0.10 TCGA-HU-8604-01 13 47224395 47224395 G A LRCH1 Missense_Mutation p.E123K 0.18 deleterious(0.02) probably_damaging(0.999) TCGA-HU-8604-01 13 58207414 58207414 C T PCDH17 Missense_Mutation p.A245V 0.13 deleterious(0) benign(0.017) TCGA-HU-8604-01 13 58299127 58299127 A C PCDH17 Missense_Mutation p.K1060T 0.10 deleterious_low_confidence(0) benign(0.421) TCGA-HU-8604-01 13 61985660 61985660 T C PCDH20 Missense_Mutation p.R858G 0.36 deleterious(0.01) benign(0.142) TCGA-HU-8604-01 13 92408651 92408651 G T GPC5 Missense_Mutation p.W419C 0.09 deleterious(0) probably_damaging(1) TCGA-HU-8604-01 14 22102698 22102698 C T OR10G2 Missense_Mutation p.G101S 0.09 tolerated(0.21) benign(0.371) TCGA-HU-8604-01 14 22740336 22740336 G A TRAV38-1 Silent p.T80T 0.13 TCGA-HU-8604-01 14 29237297 29237297 G A FOXG1 Missense_Mutation p.G271D 0.30 deleterious(0) probably_damaging(1) TCGA-HU-8604-01 14 62463155 62463155 A G SYT16 Missense_Mutation p.I140V 0.07 tolerated(0.22) benign(0.006) TCGA-HU-8604-01 15 100942975 100942975 T C CERS3 Silent p.L365L 0.12 TCGA-HU-8604-01 15 23021278 23021278 G A NIPA2 Missense_Mutation p.S20F 0.12 deleterious(0) probably_damaging(1) TCGA-HU-8604-01 15 25222082 25222082 C A SNRPN Missense_Mutation p.A109E 0.21 deleterious(0.01) possibly_damaging(0.615) TCGA-HU-8604-01 15 27271960 27271960 A G GABRG3 Missense_Mutation p.I88V 0.50 tolerated(0.45) benign(0.127) TCGA-HU-8604-01 15 30926471 30926471 T C ARHGAP11B Silent p.I132I 0.15 TCGA-HU-8604-01 15 43067607 43067607 G C TTBK2 Missense_Mutation p.T575S 0.27 deleterious(0.04) benign(0.297) TCGA-HU-8604-01 15 44105482 44105482 G A MFAP1 Missense_Mutation p.R231C 0.13 deleterious(0) probably_damaging(0.964) TCGA-HU-8604-01 15 49935791 49935791 T G DTWD1 3'UTR 0.11 TCGA-HU-8604-01 15 90349397 90349397 G A ANPEP Missense_Mutation p.R140C 0.40 deleterious(0.02) benign(0.27) TCGA-HU-8604-01 15 92706046 92706046 G A SLCO3A1 Missense_Mutation p.S605N 0.18 deleterious(0.04) possibly_damaging(0.886) TCGA-HU-8604-01 16 5064923 5064923 G A SEC14L5 Silent p.S681S 0.10 TCGA-HU-8604-01 16 58019442 58019442 C A TEPP Missense_Mutation p.F275L 0.09 tolerated(0.09) benign(0.441) TCGA-HU-8604-01 16 7568266 7568266 G A RBFOX1 Missense_Mutation p.A69T 0.15 tolerated(1) benign(0.048) TCGA-HU-8604-01 16 81061840 81061840 G A CENPN Missense_Mutation p.R292Q 0.15 deleterious(0) probably_damaging(1) TCGA-HU-8604-01 16 84690914 84690914 C T KLHL36 Silent p.I167I 0.09 TCGA-HU-8604-01 16 8941586 8941586 C T PMM2 Silent p.G215G 0.15 TCGA-HU-8604-01 16 90002028 90002028 G A TUBB3 Missense_Mutation p.R390Q 0.12 deleterious_low_confidence(0.04) benign(0.027) TCGA-HU-8604-01 17 1657612 1657612 C T SERPINF2 Silent p.F420F 0.31 TCGA-HU-8604-01 17 30986210 30986210 G A MYO1D Silent p.Y756Y 0.09 TCGA-HU-8604-01 17 33521011 33521011 A C SLC35G3 Missense_Mutation p.F106V 0.11 tolerated(0.06) benign(0.002) TCGA-HU-8604-01 17 39114929 39114929 T C KRT39 Missense_Mutation p.E467G 0.24 deleterious(0) probably_damaging(0.998) TCGA-HU-8604-01 17 39635168 39635168 C T KRT35 Missense_Mutation p.R264Q 0.29 tolerated(0.23) probably_damaging(0.955) TCGA-HU-8604-01 17 40476996 40476996 C T STAT3 Silent p.L483L 0.20 TCGA-HU-8604-01 17 47782507 47782507 G A SLC35B1 Silent p.V169V 0.20 TCGA-HU-8604-01 17 48828097 48828097 C A LUC7L3 3'UTR 0.18 TCGA-HU-8604-01 17 66902186 66902186 C T ABCA8 Silent p.S759S 0.12 TCGA-HU-8604-01 17 72889611 72889611 C T FADS6 Missense_Mutation p.R28Q 0.36 tolerated(0.6) benign(0.005) TCGA-HU-8604-01 17 7416898 7416898 C T POLR2A Missense_Mutation p.T1772I 0.16 unknown(0) TCGA-HU-8604-01 17 7579585 7579585 G - TP53 Frame_Shift_Del p.L35Cfs*9 0.24 TCGA-HU-8604-01 17 76089149 76089149 G A TNRC6C Missense_Mutation p.R1366H 0.18 deleterious(0.01) possibly_damaging(0.9) TCGA-HU-8604-01 17 79410252 79410252 C T RP11-1055B8.7 Missense_Mutation p.P626L 0.13 probably_damaging(0.999) TCGA-HU-8604-01 17 9820567 9820567 C A GAS7 Missense_Mutation p.R470L 0.20 deleterious(0) probably_damaging(0.971) TCGA-HU-8604-01 18 25727656 25727656 T G CDH2 Missense_Mutation p.E51D 0.24 tolerated(0.21) benign(0.096) TCGA-HU-8604-01 18 45395639 45395639 G C SMAD2 Nonsense_Mutation p.Y165* 0.22 TCGA-HU-8604-01 18 7036008 7036008 G A LAMA1 Missense_Mutation p.S606L 0.33 tolerated(0.46) benign(0.01) TCGA-HU-8604-01 18 74154275 74154275 C T ZNF516 Missense_Mutation p.G246R 0.23 deleterious(0) probably_damaging(1) TCGA-HU-8604-01 18 74622027 74622027 G T ZNF236 Missense_Mutation p.G850V 0.15 tolerated(0.17) benign(0.221) TCGA-HU-8604-01 19 12760024 12760024 T A MAN2B1 Missense_Mutation p.N788Y 0.19 deleterious(0.02) benign(0.36) TCGA-HU-8604-01 19 13059627 13059627 G A RAD23A Silent p.T200T 0.34 TCGA-HU-8604-01 19 15839276 15839276 C T OR10H2 Silent p.C141C 0.34 TCGA-HU-8604-01 19 20003046 20003046 T C ZNF253 Silent p.H330H 0.16 TCGA-HU-8604-01 19 20728762 20728762 G A ZNF737 Nonsense_Mutation p.R83* 0.14 TCGA-HU-8604-01 19 21365865 21365865 T A ZNF431 Silent p.I253I 0.09 TCGA-HU-8604-01 19 2214608 2214608 C T DOT1L Intron 0.12 TCGA-HU-8604-01 19 22940707 22940707 T G ZNF99 Missense_Mutation p.K668N 0.22 deleterious(0.02) probably_damaging(0.999) TCGA-HU-8604-01 19 31768677 31768677 C T TSHZ3 Silent p.P674P 0.18 TCGA-HU-8604-01 19 39215080 39215080 C T ACTN4 Silent p.L629L 0.14 TCGA-HU-8604-01 19 45998025 45998025 G T RTN2 Silent p.G106G 0.13 TCGA-HU-8604-01 19 47588354 47588354 C T ZC3H4 Missense_Mutation p.G356R 0.22 unknown(0) TCGA-HU-8604-01 19 51559890 51559890 C T KLK13 Missense_Mutation p.R263Q 0.22 tolerated(0.49) benign(0.005) TCGA-HU-8604-01 19 53645344 53645344 A G ZNF347 Missense_Mutation p.L247S 0.19 tolerated(1) benign(0.003) TCGA-HU-8604-01 19 54974143 54974143 C G LENG9 Missense_Mutation p.K211N 0.11 tolerated(0.49) benign(0.007) TCGA-HU-8604-01 19 56307512 56307512 C T NLRP11 Missense_Mutation p.R759K 0.24 tolerated(1) benign(0.001) TCGA-HU-8604-01 19 56935080 56935080 T C ZNF583 Silent p.P351P 0.27 TCGA-HU-8604-01 19 57335747 57335747 G T PEG3 Missense_Mutation p.Q93K 0.27 deleterious(0) possibly_damaging(0.76) TCGA-HU-8604-01 19 58132192 58132192 C T ZNF134 Silent p.S235S 0.24 TCGA-HU-8604-01 19 6897451 6897451 G A EMR1 Missense_Mutation p.C136Y 0.13 deleterious(0) probably_damaging(0.954) TCGA-HU-8604-01 1 104122108 104122108 G A AMY2B Missense_Mutation p.E508K 0.08 tolerated(0.31) benign(0.008) TCGA-HU-8604-01 1 150230572 150230572 G A CA14 Missense_Mutation p.D17N 0.20 tolerated(0.59) benign(0.002) TCGA-HU-8604-01 1 152276266 152276266 C T FLG Missense_Mutation p.R3699Q 0.11 unknown(0) TCGA-HU-8604-01 1 152277297 152277297 C A FLG Silent p.V3355V 0.14 TCGA-HU-8604-01 1 155291803 155291803 G A RUSC1 Missense_Mutation p.G80D 0.10 deleterious_low_confidence(0.02) benign(0.05) TCGA-HU-8604-01 1 158687131 158687131 A C OR6K3 Missense_Mutation p.L259V 0.11 tolerated(0.84) probably_damaging(0.986) TCGA-HU-8604-01 1 159272174 159272174 C T FCER1A Missense_Mutation p.S7F 0.08 deleterious(0.02) benign(0.288) TCGA-HU-8604-01 1 170965696 170965696 A C MROH9 Missense_Mutation p.Q462H 0.10 tolerated(0.16) probably_damaging(0.981) TCGA-HU-8604-01 1 171810859 171810859 G A DNM3 Silent p.S21S 0.25 TCGA-HU-8604-01 1 196670529 196670529 A C CFH Intron 0.20 TCGA-HU-8604-01 1 196716354 196716354 C T CFH Missense_Mutation p.R1203W 0.11 tolerated(0.2) benign(0.001) TCGA-HU-8604-01 1 22165524 22165524 G A HSPG2 Missense_Mutation p.T3315M 0.08 benign(0.017) TCGA-HU-8604-01 1 228246694 228246694 C T WNT3A Missense_Mutation p.A196V 0.19 tolerated(0.42) benign(0.035) TCGA-HU-8604-01 1 247654765 247654765 C T OR2W5 RNA 0.12 TCGA-HU-8604-01 1 248458139 248458139 G T OR2T12 Missense_Mutation p.L248I 0.14 tolerated(0.11) possibly_damaging(0.521) TCGA-HU-8604-01 1 32689716 32689716 G A EIF3I Missense_Mutation p.A60T 0.18 deleterious(0.01) benign(0.084) TCGA-HU-8604-01 1 34158580 34158580 G T CSMD2 Missense_Mutation p.H1294Q 0.09 deleterious(0.03) probably_damaging(0.917) TCGA-HU-8604-01 1 66827323 66827323 A C PDE4B Silent p.P289P 0.12 TCGA-HU-8604-01 1 70488966 70488966 G C LRRC7 Missense_Mutation p.C530S 0.13 tolerated(0.33) benign(0.001) TCGA-HU-8604-01 1 79093853 79093853 T C IFI44L Missense_Mutation p.F85L 0.11 tolerated(0.1) benign(0.192) TCGA-HU-8604-01 1 91180275 91180275 G A BARHL2 Missense_Mutation p.R222C 0.11 deleterious(0) unknown(0) TCGA-HU-8604-01 1 92946367 92946367 C T GFI1 Missense_Mutation p.A193T 0.38 tolerated(0.66) benign(0.026) TCGA-HU-8604-01 20 2847197 2847197 A G VPS16 Missense_Mutation p.R833G 0.23 deleterious(0.02) benign(0.339) TCGA-HU-8604-01 20 43837052 43837052 C T SEMG1 Missense_Mutation p.R372C 0.26 deleterious(0.01) benign(0.018) TCGA-HU-8604-01 20 55206365 55206365 C T TFAP2C Silent p.V51V 0.12 TCGA-HU-8604-01 20 8665634 8665634 C T PLCB1 Silent p.V306V 0.10 TCGA-HU-8604-01 21 38593774 38593774 A C DSCR3 3'Flank 0.28 TCGA-HU-8604-01 21 43161417 43161417 C T RIPK4 Missense_Mutation p.E646K 0.28 tolerated(0.11) probably_damaging(0.998) TCGA-HU-8604-01 22 23243436 23243436 C A IGLC2 Missense_Mutation p.S94R 0.06 benign(0.039) TCGA-HU-8604-01 22 26707735 26707735 G A SEZ6L Silent p.A561A 0.27 TCGA-HU-8604-01 22 34046630 34046630 G A LARGE Missense_Mutation p.P44L 0.08 deleterious_low_confidence(0.03) possibly_damaging(0.656) TCGA-HU-8604-01 22 41791804 41791804 G A TEF Missense_Mutation p.R251Q 0.31 deleterious(0) probably_damaging(1) TCGA-HU-8604-01 22 46653338 46653338 G C PKDREJ Missense_Mutation p.A1961G 0.15 deleterious(0) benign(0.055) TCGA-HU-8604-01 22 46929691 46929691 C T CELSR1 Missense_Mutation p.C1126Y 0.13 deleterious(0) benign(0.158) TCGA-HU-8604-01 2 140990805 140990805 C A LRP1B Nonsense_Mutation p.E4584* 0.25 TCGA-HU-8604-01 2 141215210 141215210 T G LRP1B Missense_Mutation p.Q3212H 0.26 benign(0.216) TCGA-HU-8604-01 2 141751631 141751631 T G LRP1B Missense_Mutation p.Q859H 0.19 probably_damaging(0.954) TCGA-HU-8604-01 2 1643130 1643130 C A PXDN Missense_Mutation p.E1339D 0.24 tolerated(0.67) benign(0.002) TCGA-HU-8604-01 2 170063434 170063434 C A LRP2 Nonsense_Mutation p.E2266* 0.12 TCGA-HU-8604-01 2 179439346 179439346 A C TTN Missense_Mutation p.V23838G 0.11 TCGA-HU-8604-01 2 17998037 17998037 C T MSGN1 Silent p.V84V 0.15 TCGA-HU-8604-01 2 185802547 185802547 T G ZNF804A Silent p.P808P 0.09 TCGA-HU-8604-01 2 219258851 219258851 C T SLC11A1 Silent p.F441F 0.09 TCGA-HU-8604-01 2 234299087 234299087 C T DGKD Silent p.S102S 0.11 TCGA-HU-8604-01 2 242181952 242181952 C T HDLBP Missense_Mutation p.D698N 0.08 deleterious(0.04) benign(0.187) TCGA-HU-8604-01 2 242695360 242695360 G A D2HGDH Missense_Mutation p.D413N 0.10 tolerated(0.21) benign(0.09) TCGA-HU-8604-01 2 32707635 32707635 G A BIRC6 Missense_Mutation p.V2561I 0.12 benign(0) TCGA-HU-8604-01 2 33752219 33752219 A C RASGRP3 Missense_Mutation p.T275P 0.24 deleterious(0) probably_damaging(0.969) TCGA-HU-8604-01 2 33752220 33752220 C A RASGRP3 Missense_Mutation p.T275K 0.24 deleterious(0) probably_damaging(0.956) TCGA-HU-8604-01 2 50780014 50780014 G T NRXN1 Missense_Mutation p.F530L 0.18 tolerated(0.05) possibly_damaging(0.824) TCGA-HU-8604-01 2 56570051 56570051 A G CCDC85A Silent p.R426R 0.33 TCGA-HU-8604-01 2 88890523 88890523 A G EIF2AK3 Missense_Mutation p.M272T 0.20 tolerated_low_confidence(0.35) benign(0.002) TCGA-HU-8604-01 2 99260500 99260500 C T MGAT4A Silent p.A302A 0.08 TCGA-HU-8604-01 3 123038564 123038564 C T ADCY5 Missense_Mutation p.R738H 0.09 tolerated(0.11) benign(0.066) TCGA-HU-8604-01 3 13538326 13538326 C T HDAC11 Missense_Mutation p.R115W 0.22 deleterious(0) probably_damaging(0.999) TCGA-HU-8604-01 3 139078162 139078162 C A COPB2 Silent p.L751L 0.10 TCGA-HU-8604-01 3 140282887 140282887 G A CLSTN2 Missense_Mutation p.R856Q 0.20 deleterious(0.03) benign(0.277) TCGA-HU-8604-01 3 156866355 156866355 G T CCNL1 Missense_Mutation p.S419Y 0.14 deleterious(0.01) probably_damaging(0.962) TCGA-HU-8604-01 3 158980488 158980488 C A IQCJ Intron 0.16 TCGA-HU-8604-01 3 164785157 164785157 T G SI Missense_Mutation p.Q202H 0.10 deleterious(0.04) benign(0.094) TCGA-HU-8604-01 3 16646721 16646721 C T DAZL 5'Flank 0.09 TCGA-HU-8604-01 3 47098880 47098880 G A SETD2 Missense_Mutation p.R2132W 0.12 deleterious(0.01) possibly_damaging(0.763) TCGA-HU-8604-01 3 52556844 52556844 C A STAB1 Missense_Mutation p.H2266Q 0.14 deleterious(0) possibly_damaging(0.811) TCGA-HU-8604-01 3 6903385 6903385 C T GRM7 Missense_Mutation p.R104W 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-HU-8604-01 3 77684060 77684060 G T ROBO2 Missense_Mutation p.S1283I 0.08 deleterious(0) benign(0.403) TCGA-HU-8604-01 3 77693963 77693963 T C ROBO2 Missense_Mutation p.V1364A 0.15 tolerated_low_confidence(1) benign(0.153) TCGA-HU-8604-01 3 93758768 93758768 G A ARL13B Missense_Mutation p.G245D 0.12 tolerated(0.62) benign(0.001) TCGA-HU-8604-01 3 97631079 97631079 G C CRYBG3 Missense_Mutation p.L743F 0.09 tolerated(1) benign(0.057) TCGA-HU-8604-01 4 104511023 104511023 C A TACR3 Missense_Mutation p.R405I 0.26 deleterious(0) probably_damaging(0.945) TCGA-HU-8604-01 4 144918764 144918764 T G GYPB Missense_Mutation p.I67L 0.20 deleterious(0.01) benign(0.008) TCGA-HU-8604-01 4 41984183 41984183 G A DCAF4L1 Missense_Mutation p.R125Q 0.16 tolerated(0.13) benign(0.435) TCGA-HU-8604-01 4 515701 515701 G A PIGG Missense_Mutation p.V529M 0.24 tolerated(0.74) benign(0.003) TCGA-HU-8604-01 4 96256683 96256683 T A UNC5C Missense_Mutation p.K75M 0.27 deleterious(0) probably_damaging(0.984) TCGA-HU-8604-01 5 112175675 112175676 - AG APC Frame_Shift_Ins p.S1465Rfs*9 0.13 TCGA-HU-8604-01 5 128984623 128984623 C A ADAMTS19 Silent p.S706S 0.17 TCGA-HU-8604-01 5 140229433 140229433 C T PCDHA9 Silent p.N451N 0.13 TCGA-HU-8604-01 5 140261977 140261977 G A PCDHA13 Missense_Mutation p.G42S 0.24 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-HU-8604-01 5 140503532 140503532 G A PCDHB4 Missense_Mutation p.R651H 0.08 deleterious_low_confidence(0.04) benign(0.035) TCGA-HU-8604-01 5 140741307 140741307 C T PCDHGB2 Silent p.R535R 0.11 TCGA-HU-8604-01 5 140752045 140752045 C T PCDHGB3 Missense_Mutation p.A695V 0.11 deleterious(0) probably_damaging(0.994) TCGA-HU-8604-01 5 140768837 140768837 C A PCDHGB4 Missense_Mutation p.N462K 0.17 deleterious(0) probably_damaging(0.999) TCGA-HU-8604-01 5 141052170 141052170 C T ARAP3 Missense_Mutation p.R445Q 0.11 deleterious(0) probably_damaging(0.996) TCGA-HU-8604-01 5 176636752 176636752 G T NSD1 Missense_Mutation p.S451I 0.05 deleterious_low_confidence(0) possibly_damaging(0.888) TCGA-HU-8604-01 5 178391973 178391973 A G ZNF454 Missense_Mutation p.S190G 0.18 tolerated(0.21) benign(0.001) TCGA-HU-8604-01 5 34850318 34850318 G T TTC23L Missense_Mutation p.R95L 0.08 deleterious(0.01) probably_damaging(0.91) TCGA-HU-8604-01 5 44809103 44809103 T G MRPS30 Silent p.G13G 0.19 TCGA-HU-8604-01 5 45262804 45262804 T G HCN1 Missense_Mutation p.E631A 0.33 deleterious(0.03) probably_damaging(0.971) TCGA-HU-8604-01 5 45645310 45645310 T C HCN1 Missense_Mutation p.R276G 0.11 deleterious(0) probably_damaging(0.994) TCGA-HU-8604-01 5 54763900 54763900 G A PPAP2A Silent p.A97A 0.11 TCGA-HU-8604-01 6 100060991 100060991 C T PRDM13 Silent p.C160C 0.13 TCGA-HU-8604-01 6 108985242 108985242 G A FOXO3 Silent p.S402S 0.25 TCGA-HU-8604-01 6 123892170 123892170 A C TRDN Missense_Mutation p.F44V 0.33 deleterious_low_confidence(0) unknown(0) TCGA-HU-8604-01 6 127837188 127837188 G A SOGA3 Missense_Mutation p.P191L 0.20 tolerated_low_confidence(0.13) possibly_damaging(0.726) TCGA-HU-8604-01 6 146244889 146244889 C G SHPRH Silent p.V1145V 0.10 TCGA-HU-8604-01 6 146720447 146720447 G A GRM1 Missense_Mutation p.G758S 0.09 deleterious(0.03) probably_damaging(0.971) TCGA-HU-8604-01 6 160464204 160464204 T - IGF2R Frame_Shift_Del p.V502Gfs*55 0.10 TCGA-HU-8604-01 6 162206908 162206908 C A PARK2 Missense_Mutation p.R256L 0.12 tolerated(0.05) probably_damaging(0.996) TCGA-HU-8604-01 6 16326864 16326864 C T ATXN1 Missense_Mutation p.V560M 0.12 deleterious(0.05) benign(0.033) TCGA-HU-8604-01 6 17629497 17629497 T C NUP153 Missense_Mutation p.N978S 0.15 tolerated(0.53) benign(0.002) TCGA-HU-8604-01 6 26199355 26199356 - T HIST1H2AD Frame_Shift_Ins p.N39Kfs*62 0.13 TCGA-HU-8604-01 6 31833651 31833651 G A SLC44A4 Missense_Mutation p.R496C 0.09 deleterious(0) benign(0.262) TCGA-HU-8604-01 6 35210049 35210049 C T SCUBE3 Silent p.L496L 0.12 TCGA-HU-8604-01 6 43415571 43415571 C G ABCC10 Silent p.G1285G 0.16 TCGA-HU-8604-01 6 46660186 46660186 C A TDRD6 Silent p.R1441R 0.22 TCGA-HU-8604-01 6 76751766 76751766 C A IMPG1 Nonsense_Mutation p.E49* 0.09 TCGA-HU-8604-01 6 83748171 83748171 G A UBE3D Missense_Mutation p.R211C 0.08 deleterious(0) probably_damaging(0.997) TCGA-HU-8604-01 7 140285420 140285420 G A DENND2A Missense_Mutation p.P405L 0.13 deleterious(0.04) possibly_damaging(0.774) TCGA-HU-8604-01 7 157178350 157178350 C T DNAJB6 Intron 0.18 TCGA-HU-8604-01 7 24892212 24892212 C T OSBPL3 Missense_Mutation p.E357K 0.30 deleterious(0.01) probably_damaging(0.915) TCGA-HU-8604-01 7 4949553 4949553 C T MMD2 Missense_Mutation p.V190I 0.13 tolerated(0.14) benign(0.045) TCGA-HU-8604-01 7 6509271 6509271 C T KDELR2 Missense_Mutation p.G103R 0.06 tolerated(0.21) benign(0.361) TCGA-HU-8604-01 7 81695790 81695790 C A CACNA2D1 Missense_Mutation p.D237Y 0.10 deleterious(0) probably_damaging(1) TCGA-HU-8604-01 7 82544081 82544081 T G PCLO Missense_Mutation p.E4407D 0.35 unknown(0) TCGA-HU-8604-01 7 92763852 92763852 G T SAMD9L Missense_Mutation p.T478N 0.10 tolerated(0.47) benign(0.007) TCGA-HU-8604-01 8 104922740 104922740 C A RIMS2 Intron 0.17 TCGA-HU-8604-01 8 104987701 104987701 G T RIMS2 Missense_Mutation p.R965I 0.22 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-HU-8604-01 8 105436539 105436539 T G DPYS Silent p.R391R 0.11 TCGA-HU-8604-01 8 105509626 105509626 T G LRP12 Missense_Mutation p.N385T 0.17 deleterious(0.02) probably_damaging(0.933) TCGA-HU-8604-01 8 11614478 11614478 C T GATA4 Silent p.S344S 0.15 TCGA-HU-8604-01 8 118819534 118819534 G A EXT1 Missense_Mutation p.S602F 0.19 deleterious(0.01) benign(0.203) TCGA-HU-8604-01 8 134107329 134107329 G T TG Missense_Mutation p.E2427D 0.09 tolerated(0.33) benign(0.008) TCGA-HU-8604-01 8 2967856 2967856 G A CSMD1 Silent p.A2144A 0.24 TCGA-HU-8604-01 8 36763262 36763262 G T KCNU1 Missense_Mutation p.Q682H 0.17 tolerated(0.16) benign(0.006) TCGA-HU-8604-01 8 42036423 42036423 C T PLAT Missense_Mutation p.A508T 0.12 deleterious(0) probably_damaging(0.999) TCGA-HU-8604-01 8 52321442 52321442 C T PXDNL Silent p.S914S 0.09 TCGA-HU-8604-01 8 77767332 77767332 G T ZFHX4 Missense_Mutation p.Q2725H 0.20 possibly_damaging(0.862) TCGA-HU-8604-01 8 95839622 95839622 A G INTS8 Missense_Mutation p.Y146C 0.24 deleterious(0) probably_damaging(0.999) TCGA-HU-8604-01 9 131010944 131010944 G A DNM1 Missense_Mutation p.R663Q 0.27 deleterious(0.03) possibly_damaging(0.896) TCGA-HU-8604-01 9 131595805 131595805 C T CCBL1 3'UTR 0.26 TCGA-HU-8604-01 9 4286252 4286252 G A GLIS3 Silent p.L58L 0.09 TCGA-HU-8604-01 9 6014769 6014769 C G RANBP6 Missense_Mutation p.S280T 0.92 tolerated(0.42) benign(0.005) TCGA-HU-8604-01 X 104478507 104478507 C A IL1RAPL2 Nonsense_Mutation p.S121* 0.06 TCGA-HU-8604-01 X 19431478 19431478 T C MAP3K15 Silent p.E565E 0.21 TCGA-HU-8604-01 X 26157428 26157428 A G MAGEB18 Missense_Mutation p.K109R 0.38 tolerated(0.92) benign(0.003) TCGA-HU-8604-01 X 26212528 26212528 C T MAGEB6 Missense_Mutation p.R189C 0.19 deleterious(0.04) benign(0.183) TCGA-HU-8604-01 X 27998645 27998645 T C DCAF8L1 Silent p.E269E 0.18 TCGA-HU-8604-01 X 30237209 30237209 T G MAGEB2 Missense_Mutation p.V171G 0.26 deleterious(0.01) possibly_damaging(0.783) TCGA-HU-8604-01 X 31893328 31893328 G T DMD Missense_Mutation p.Q2359K 0.12 benign(0) TCGA-HU-8604-01 X 35820607 35820607 C T MAGEB16 Silent p.S98S 0.26 TCGA-HU-8604-01 X 39933151 39933151 G A BCOR Missense_Mutation p.P483L 0.24 tolerated(0.25) probably_damaging(0.999) TCGA-HU-8604-01 X 46433819 46433819 C T CHST7 Silent p.G151G 0.18 TCGA-HU-8604-01 X 48386665 48386665 C T EBP Silent p.R171R 0.16 TCGA-HU-8604-01 X 49032238 49032238 A C PRICKLE3 Silent p.S544S 0.08 TCGA-HU-8604-01 X 54785377 54785377 T G ITIH6 Missense_Mutation p.N377T 0.19 tolerated(0.28) benign(0.173) TCGA-HU-8604-01 X 5811502 5811502 T C NLGN4X Missense_Mutation p.I603V 0.11 tolerated(0.52) benign(0.016) TCGA-HU-8604-01 X 70767789 70767789 G A OGT Silent p.P188P 0.18 TCGA-HU-8608-01 10 101458523 101458523 T G ENTPD7 Missense_Mutation p.F415V 0.20 deleterious(0) probably_damaging(0.993) TCGA-HU-8608-01 10 134016171 134016171 G A DPYSL4 Missense_Mutation p.E435K 0.17 deleterious(0.02) possibly_damaging(0.695) TCGA-HU-8608-01 10 16996518 16996518 G T CUBN Silent p.S1575S 0.18 TCGA-HU-8608-01 10 43600608 43600608 C T RET Silent p.T278T 0.20 TCGA-HU-8608-01 10 87484322 87484322 C T GRID1 Missense_Mutation p.E549K 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-HU-8608-01 11 117376176 117376176 G A DSCAML1 Silent p.I745I 0.14 TCGA-HU-8608-01 11 19256429 19256429 T A E2F8 Nonsense_Mutation p.K210* 0.13 TCGA-HU-8608-01 11 47463391 47463391 C T RAPSN Missense_Mutation p.S258N 0.20 tolerated(0.67) benign(0.013) TCGA-HU-8608-01 11 4790243 4790243 C T OR51F1 Missense_Mutation p.R302H 0.20 deleterious(0.05) benign(0.035) TCGA-HU-8608-01 11 5565982 5565982 T A OR52H1 Missense_Mutation p.M258L 0.22 tolerated(0.65) benign(0.133) TCGA-HU-8608-01 11 59344413 59344413 G A OSBP Missense_Mutation p.R716W 0.20 deleterious(0) probably_damaging(1) TCGA-HU-8608-01 11 6703464 6703464 C G MRPL17 Missense_Mutation p.R138T 0.14 tolerated(0.32) benign(0.253) TCGA-HU-8608-01 11 75115769 75115769 A G RPS3 Missense_Mutation p.I214V 0.22 tolerated(0.56) benign(0.003) TCGA-HU-8608-01 12 10133333 10133333 G A CLEC12A Splice_Site p.X187_splice 0.16 TCGA-HU-8608-01 12 105597491 105597491 T C APPL2 Missense_Mutation p.M238V 0.14 tolerated(0.2) benign(0.126) TCGA-HU-8608-01 12 38714279 38714279 A T ALG10B Missense_Mutation p.E229V 0.16 tolerated(0.52) benign(0.158) TCGA-HU-8608-01 12 52115568 52115568 G A SCN8A Missense_Mutation p.R625H 0.33 tolerated(0.41) probably_damaging(0.946) TCGA-HU-8608-01 12 990059 990059 A G WNK1 Missense_Mutation p.N1002S 0.22 tolerated(0.61) benign(0.145) TCGA-HU-8608-01 13 114795308 114795308 A G RASA3 Missense_Mutation p.V143A 0.20 tolerated(0.1) benign(0.046) TCGA-HU-8608-01 13 32811574 32811574 G T FRY Nonsense_Mutation p.G1957* 0.07 TCGA-HU-8608-01 13 41706551 41706551 A G KBTBD6 Missense_Mutation p.F33L 0.17 tolerated_low_confidence(0.05) benign(0.082) TCGA-HU-8608-01 14 105931113 105931113 C T MTA1 Missense_Mutation p.R483W 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-HU-8608-01 14 64484436 64484436 T A SYNE2 Missense_Mutation p.L1671I 0.16 possibly_damaging(0.827) TCGA-HU-8608-01 15 24922918 24922918 T C NPAP1 Missense_Mutation p.F635S 0.15 tolerated(0.19) possibly_damaging(0.898) TCGA-HU-8608-01 15 43621365 43621365 A G LCMT2 Silent p.S441S 0.20 TCGA-HU-8608-01 15 75980584 75980584 C T CSPG4 Missense_Mutation p.R941H 0.15 tolerated(0.08) benign(0.009) TCGA-HU-8608-01 15 93524598 93524598 A G CHD2 Missense_Mutation p.M993V 0.12 tolerated(0.67) benign(0.111) TCGA-HU-8608-01 16 15733043 15733050 TCCACGTG - KIAA0430 Frame_Shift_Del p.T14Mfs*6 0.11 TCGA-HU-8608-01 16 23392145 23392145 C T SCNN1B 3'UTR 0.16 TCGA-HU-8608-01 16 23700944 23700944 A - PLK1 Frame_Shift_Del p.S519Afs*28 0.17 TCGA-HU-8608-01 16 48167651 48167651 C T ABCC12 Missense_Mutation p.V359M 0.12 deleterious(0.05) possibly_damaging(0.603) TCGA-HU-8608-01 16 48226539 48226539 G A ABCC11 Silent p.Y866Y 0.22 TCGA-HU-8608-01 16 67690153 67690153 G A RLTPR Silent p.T1255T 0.12 TCGA-HU-8608-01 16 67980104 67980104 C A SLC12A4 Missense_Mutation p.M861I 0.25 tolerated(0.11) possibly_damaging(0.839) TCGA-HU-8608-01 16 69201031 69201031 A G CIRH1A Silent p.E629E 0.14 TCGA-HU-8608-01 16 69356604 69356607 GTAA - VPS4A Splice_Site p.X404_splice 0.20 TCGA-HU-8608-01 17 14248833 14248833 G T HS3ST3B1 Missense_Mutation p.C348F 0.13 deleterious(0) probably_damaging(1) TCGA-HU-8608-01 17 19559856 19559856 G A ALDH3A2 Missense_Mutation p.D217N 0.13 deleterious(0.01) probably_damaging(0.996) TCGA-HU-8608-01 17 21318895 21318895 C T KCNJ12 Missense_Mutation p.R81W 0.05 deleterious(0) probably_damaging(0.998) TCGA-HU-8608-01 17 48917272 48917272 C T WFIKKN2 Missense_Mutation p.A208V 0.17 tolerated(0.57) benign(0) TCGA-HU-8608-01 17 56084463 56084463 C T SRSF1 Silent p.G12G 0.18 TCGA-HU-8608-01 17 56247498 56247498 C T OR4D2 Missense_Mutation p.A161V 0.19 tolerated(0.36) benign(0.02) TCGA-HU-8608-01 17 56271430 56271430 C T EPX Missense_Mutation p.R191C 0.18 tolerated(0.16) possibly_damaging(0.846) TCGA-HU-8608-01 17 7005041 7005041 C A ASGR2 Missense_Mutation p.Q263H 0.39 deleterious(0) probably_damaging(0.958) TCGA-HU-8608-01 19 10225259 10225259 G A PPAN-P2RY11 Missense_Mutation p.A744T 0.18 deleterious_low_confidence(0.04) benign(0.003) TCGA-HU-8608-01 19 15763705 15763705 G A CYP4F3 Missense_Mutation p.R353H 0.18 tolerated(0.07) benign(0.077) TCGA-HU-8608-01 19 18468415 18468415 G A PGPEP1 Missense_Mutation p.D143N 0.27 deleterious(0.03) possibly_damaging(0.588) TCGA-HU-8608-01 19 1918891 1918891 C T SCAMP4 Silent p.A99A 0.19 TCGA-HU-8608-01 19 40433845 40433845 C T FCGBP Missense_Mutation p.E142K 0.23 benign(0.02) TCGA-HU-8608-01 19 4504699 4504699 G A PLIN4 Silent p.A1282A 0.22 TCGA-HU-8608-01 19 54137863 54137863 A G DPRX Missense_Mutation p.N36S 0.19 tolerated(0.82) benign(0.022) TCGA-HU-8608-01 19 57175194 57175194 C A ZNF835 Missense_Mutation p.R458L 0.33 tolerated(0.24) benign(0.214) TCGA-HU-8608-01 19 9059719 9059719 C A MUC16 Missense_Mutation p.A9243S 0.18 unknown(0) TCGA-HU-8608-01 19 9639881 9639881 G A ZNF426 Silent p.Y280Y 0.19 TCGA-HU-8608-01 1 118581983 118581983 T C SPAG17 Missense_Mutation p.K1084R 0.17 tolerated(0.21) benign(0.014) TCGA-HU-8608-01 1 152084596 152084596 C T TCHH Missense_Mutation p.R366H 0.16 unknown(0) TCGA-HU-8608-01 1 182555204 182555204 T G RNASEL Silent p.A246A 0.19 TCGA-HU-8608-01 1 190067820 190067820 C G BRINP3 Missense_Mutation p.K543N 0.18 deleterious(0.01) probably_damaging(0.994) TCGA-HU-8608-01 1 228469665 228469665 G A OBSCN Silent p.K3172K 0.20 TCGA-HU-8608-01 1 27023420 27023420 C T ARID1A Nonsense_Mutation p.Q176* 0.31 TCGA-HU-8608-01 1 3319509 3319509 C T PRDM16 Silent p.S277S 0.45 TCGA-HU-8608-01 1 35657111 35657111 G C SFPQ Missense_Mutation p.S283C 0.23 deleterious(0) probably_damaging(0.939) TCGA-HU-8608-01 1 53261986 53261986 A G ZYG11B Missense_Mutation p.M453V 0.20 tolerated(0.07) benign(0.001) TCGA-HU-8608-01 21 44514611 44514611 C T U2AF1 Missense_Mutation p.R182Q 0.21 tolerated(0.12) unknown(0) TCGA-HU-8608-01 2 107042458 107042458 G A RGPD3 Missense_Mutation p.P898S 0.02 deleterious(0.04) possibly_damaging(0.702) TCGA-HU-8608-01 2 112940381 112940381 T C FBLN7 Silent p.C228C 0.15 TCGA-HU-8608-01 2 11427816 11427816 C T ROCK2 Missense_Mutation p.R63K 0.24 tolerated(0.39) benign(0.02) TCGA-HU-8608-01 2 157184976 157184976 G A NR4A2 Missense_Mutation p.R312W 0.23 deleterious(0) probably_damaging(1) TCGA-HU-8608-01 2 187611822 187611822 C T FAM171B Missense_Mutation p.A190V 0.12 tolerated(0.1) benign(0.059) TCGA-HU-8608-01 2 191843630 191843630 C T STAT1 Missense_Mutation p.E609K 0.13 tolerated(0.06) benign(0.121) TCGA-HU-8608-01 2 203846292 203846292 G T CARF Nonsense_Mutation p.E525* 0.20 TCGA-HU-8608-01 2 219251382 219251382 A G SLC11A1 Missense_Mutation p.T140A 0.09 deleterious(0.02) benign(0.232) TCGA-HU-8608-01 2 241987763 241987763 G A SNED1 Silent p.S435S 0.12 TCGA-HU-8608-01 2 95815288 95815288 C T ZNF514 Silent p.K314K 0.11 TCGA-HU-8608-01 3 111700750 111700750 A G ABHD10 Missense_Mutation p.M88V 0.25 deleterious(0.03) possibly_damaging(0.902) TCGA-HU-8608-01 3 150459821 150459821 T C SIAH2 3'UTR 0.25 TCGA-HU-8608-01 3 178921553 178921553 T A PIK3CA Missense_Mutation p.N345K 0.16 deleterious(0.01) probably_damaging(1) TCGA-HU-8608-01 3 178922324 178922324 G A PIK3CA Missense_Mutation p.E365K 0.15 deleterious(0.05) possibly_damaging(0.705) TCGA-HU-8608-01 3 49160321 49160321 C A LAMB2 Silent p.L1463L 0.14 TCGA-HU-8608-01 3 49249270 49249271 - TAAGT CCDC36 Splice_Site p.X19_splice 0.17 TCGA-HU-8608-01 4 120440290 120440291 - TG PDE5A Frame_Shift_Ins p.K637Tfs*3 0.16 TCGA-HU-8608-01 4 128651788 128651788 G A SLC25A31 Missense_Mutation p.A30T 0.10 deleterious(0.02) possibly_damaging(0.892) TCGA-HU-8608-01 4 160259464 160259464 G A RAPGEF2 Missense_Mutation p.D552N 0.09 deleterious(0.04) benign(0.41) TCGA-HU-8608-01 4 2934131 2934131 C T MFSD10 Missense_Mutation p.D214N 0.20 tolerated(0.13) benign(0.034) TCGA-HU-8608-01 4 89317276 89317276 C T HERC6 Missense_Mutation p.S290L 0.15 deleterious(0) probably_damaging(1) TCGA-HU-8608-01 5 101774450 101774450 G T SLCO6A1 Missense_Mutation p.P383T 0.15 deleterious(0.01) probably_damaging(0.986) TCGA-HU-8608-01 5 138758403 138758403 T C DNAJC18 Missense_Mutation p.Y258C 0.17 tolerated(0.13) probably_damaging(0.974) TCGA-HU-8608-01 5 140263899 140263899 G A PCDHA13 Silent p.A682A 0.23 TCGA-HU-8608-01 5 140789875 140789875 C G PCDHGB6 Silent p.L702L 0.20 TCGA-HU-8608-01 5 142693630 142693630 C A NR3C1 Nonsense_Mutation p.G430* 0.28 TCGA-HU-8608-01 5 94027907 94027907 G A ANKRD32 Missense_Mutation p.D881N 0.15 deleterious(0) probably_damaging(0.999) TCGA-HU-8608-01 6 111136403 111136403 T C CDK19 5'UTR 0.42 TCGA-HU-8608-01 6 119324198 119324198 G C FAM184A Missense_Mutation p.L652V 0.23 deleterious(0) benign(0.249) TCGA-HU-8608-01 6 138640958 138640958 C T KIAA1244 Silent p.H1531H 0.24 TCGA-HU-8608-01 6 168323587 168323587 A G MLLT4 Missense_Mutation p.Y980C 0.17 deleterious(0) possibly_damaging(0.819) TCGA-HU-8608-01 7 117365228 117365228 G A CTTNBP2 Missense_Mutation p.P1380L 0.20 deleterious(0) benign(0.003) TCGA-HU-8608-01 7 120382625 120382625 A G KCND2 Missense_Mutation p.H479R 0.16 deleterious_low_confidence(0.02) possibly_damaging(0.876) TCGA-HU-8608-01 7 6150918 6150918 C T USP42 Missense_Mutation p.L52F 0.15 deleterious(0.01) probably_damaging(0.962) TCGA-HU-8608-01 8 3087702 3087702 C T CSMD1 Missense_Mutation p.R1402H 0.22 probably_damaging(0.988) TCGA-HU-8608-01 8 65291708 65291708 C A MIR124-2 RNA 0.19 TCGA-HU-8608-01 8 68965375 68965375 G A PREX2 Silent p.K329K 0.21 TCGA-HU-8608-01 8 77618345 77618345 T A ZFHX4 Nonsense_Mutation p.C674* 0.21 TCGA-HU-8608-01 8 77762599 77762599 G A ZFHX4 Splice_Site p.X1322_splice 0.19 TCGA-HU-8608-01 8 95658491 95658491 C T ESRP1 Silent p.D157D 0.18 TCGA-HU-8608-01 9 100849716 100849716 C T TRIM14 3'UTR 0.16 TCGA-HU-8608-01 9 139739581 139739581 C A C9orf172 Missense_Mutation p.P239T 0.15 deleterious(0) probably_damaging(0.968) TCGA-HU-8608-01 9 33307203 33307203 A C NFX1 Missense_Mutation p.N428H 0.17 deleterious(0) possibly_damaging(0.77) TCGA-HU-8608-01 9 34971401 34971401 C T KIAA1045 Missense_Mutation p.R36C 0.22 deleterious(0) possibly_damaging(0.821) TCGA-HU-8608-01 9 5078361 5078361 G C JAK2 Missense_Mutation p.R683T 0.64 deleterious(0) probably_damaging(0.999) TCGA-HU-8608-01 X 39921997 39921997 A G BCOR Splice_Site p.X1391_splice 0.47 TCGA-HU-8610-01 10 135123307 135123307 C G ZNF511 Silent p.A85A 0.10 TCGA-HU-8610-01 10 18835004 18835004 C T NSUN6 Missense_Mutation p.R423Q 0.10 deleterious(0) probably_damaging(0.999) TCGA-HU-8610-01 10 48371149 48371149 G A ZNF488 Missense_Mutation p.R206Q 0.10 tolerated(0.69) possibly_damaging(0.596) TCGA-HU-8610-01 10 73270759 73270759 G A CDH23-AS1 Intron 0.11 TCGA-HU-8610-01 10 76993789 76993789 C - COMTD1 3'UTR 0.09 TCGA-HU-8610-01 12 11420535 11420535 T G PRB3 Intron 0.07 TCGA-HU-8610-01 12 78444643 78444643 G T NAV3 Missense_Mutation p.L744F 0.10 deleterious(0.02) probably_damaging(1) TCGA-HU-8610-01 14 50666457 50666457 A T SOS2 Missense_Mutation p.H154Q 0.10 tolerated(0.07) probably_damaging(0.988) TCGA-HU-8610-01 14 52734889 52734889 G A PTGDR Silent p.S119S 0.09 TCGA-HU-8610-01 15 43748491 43748491 C T TP53BP1 Missense_Mutation p.R772K 0.30 tolerated_low_confidence(0.46) benign(0.287) TCGA-HU-8610-01 15 48429089 48429089 G A SLC24A5 Missense_Mutation p.G267E 0.15 deleterious(0.01) benign(0.052) TCGA-HU-8610-01 17 34893858 34893858 G T PIGW Missense_Mutation p.R303L 0.11 deleterious(0) probably_damaging(0.999) TCGA-HU-8610-01 17 39553526 39553526 C T KRT31 Missense_Mutation p.R89Q 0.25 tolerated(0.56) benign(0.014) TCGA-HU-8610-01 18 44013236 44013236 G A RNF165 Missense_Mutation p.A49T 0.18 tolerated_low_confidence(0.27) benign(0.001) TCGA-HU-8610-01 18 57107014 57107014 G A CCBE1 Silent p.P270P 0.17 TCGA-HU-8610-01 18 7011407 7011407 C G LAMA1 Silent p.G1193G 0.47 TCGA-HU-8610-01 18 9204526 9204526 T G ANKRD12 Silent p.S96S 0.11 TCGA-HU-8610-01 19 31769921 31769921 G A TSHZ3 Missense_Mutation p.R260C 0.13 deleterious(0) probably_damaging(1) TCGA-HU-8610-01 19 36431169 36431169 G A LRFN3 Missense_Mutation p.R281H 0.17 deleterious(0) probably_damaging(0.959) TCGA-HU-8610-01 19 49878345 49878345 A G DKKL1 3'UTR 0.25 TCGA-HU-8610-01 19 51920084 51920084 G A SIGLEC10 Missense_Mutation p.T181M 0.14 tolerated(0.29) benign(0.072) TCGA-HU-8610-01 19 57175776 57175776 G A ZNF835 Missense_Mutation p.A264V 0.14 tolerated(0.26) possibly_damaging(0.876) TCGA-HU-8610-01 19 58438782 58438782 C A ZNF418 Missense_Mutation p.R256I 0.14 deleterious(0.03) possibly_damaging(0.639) TCGA-HU-8610-01 19 7977041 7977041 A G MAP2K7 Missense_Mutation p.K363E 0.32 deleterious(0) probably_damaging(0.963) TCGA-HU-8610-01 19 9922033 9922033 G A FBXL12 Missense_Mutation p.R174C 0.18 tolerated(0.21) benign(0.011) TCGA-HU-8610-01 1 111217025 111217025 C T KCNA3 Missense_Mutation p.R136H 0.14 deleterious(0) probably_damaging(1) TCGA-HU-8610-01 1 11716012 11716012 C A FBXO44 Silent p.L40L 0.13 TCGA-HU-8610-01 1 118616478 118616478 T C SPAG17 Missense_Mutation p.Q795R 0.12 deleterious(0.01) probably_damaging(0.997) TCGA-HU-8610-01 1 12836227 12836227 T A PRAMEF12 Missense_Mutation p.S277T 0.09 tolerated(0.22) probably_damaging(0.916) TCGA-HU-8610-01 1 152282723 152282723 C T FLG Missense_Mutation p.E1547K 0.12 benign(0.292) TCGA-HU-8610-01 1 204433201 204433201 T C PIK3C2B Missense_Mutation p.R417G 0.09 tolerated(0.45) benign(0.003) TCGA-HU-8610-01 1 228399516 228399516 G A OBSCN Missense_Mutation p.R11H 0.21 probably_damaging(0.998) TCGA-HU-8610-01 1 54348919 54348919 G T YIPF1 Missense_Mutation p.A21E 0.14 tolerated(0.74) benign(0.007) TCGA-HU-8610-01 1 67795312 67795312 A C IL12RB2 Missense_Mutation p.K236T 0.17 deleterious(0) benign(0.045) TCGA-HU-8610-01 20 43625835 43625835 C G STK4 Missense_Mutation p.P240R 0.08 deleterious(0) probably_damaging(0.981) TCGA-HU-8610-01 20 57561860 57561860 A C NELFCD Missense_Mutation p.E94D 0.12 tolerated(0.51) benign(0.004) TCGA-HU-8610-01 20 61391604 61391604 C A NTSR1 Silent p.R414R 0.14 TCGA-HU-8610-01 22 17983950 17983950 G A CECR2 Missense_Mutation p.E217K 0.22 deleterious(0.04) probably_damaging(0.997) TCGA-HU-8610-01 2 165584554 165584554 G A COBLL1 Nonsense_Mutation p.Q196* 0.17 TCGA-HU-8610-01 2 179418418 179418418 C T TTN Missense_Mutation p.E29772K 0.09 TCGA-HU-8610-01 2 179659907 179659907 C G TTN Missense_Mutation p.K329N 0.24 TCGA-HU-8610-01 2 207528029 207528029 C A DYTN Nonsense_Mutation p.G411* 0.12 TCGA-HU-8610-01 2 220353344 220353344 C T SPEG Silent p.N2661N 0.20 TCGA-HU-8610-01 2 226447619 226447619 G A NYAP2 Missense_Mutation p.G496R 0.14 tolerated(0.07) possibly_damaging(0.669) TCGA-HU-8610-01 2 228124582 228124582 G A COL4A3 Missense_Mutation p.R368H 0.13 probably_damaging(0.998) TCGA-HU-8610-01 2 232100085 232100085 C T ARMC9 Silent p.S257S 0.06 TCGA-HU-8610-01 2 33246091 33246091 G A LTBP1 Silent p.S227S 0.11 TCGA-HU-8610-01 2 37365428 37365428 A C EIF2AK2 Missense_Mutation p.S224R 0.14 tolerated(0.42) benign(0.012) TCGA-HU-8610-01 2 9533747 9533747 C T ASAP2 Silent p.S885S 0.19 TCGA-HU-8610-01 3 56207483 56207483 G A ERC2 Silent p.I380I 0.19 TCGA-HU-8610-01 4 114264209 114264209 G A ANK2 Missense_Mutation p.G1387S 0.16 probably_damaging(1) TCGA-HU-8610-01 4 123236709 123236720 AATGCTCTGGGC - KIAA1109 In_Frame_Del p.A3470_N3473del 0.10 TCGA-HU-8610-01 5 140215213 140215213 C T PCDHA7 Silent p.R415R 0.16 TCGA-HU-8610-01 5 140242206 140242206 C T AC005609.1 3'UTR 0.18 TCGA-HU-8610-01 5 140769318 140769318 G A PCDHGB4 Missense_Mutation p.E623K 0.13 deleterious(0.01) probably_damaging(0.944) TCGA-HU-8610-01 5 153077664 153077664 G A GRIA1 Missense_Mutation p.G409S 0.12 tolerated(0.25) benign(0.156) TCGA-HU-8610-01 5 169435708 169435708 C T DOCK2 Missense_Mutation p.R1064W 0.15 deleterious(0) possibly_damaging(0.776) TCGA-HU-8610-01 6 43406375 43406375 G A ABCC10 Missense_Mutation p.V657M 0.11 deleterious(0.01) benign(0.135) TCGA-HU-8610-01 7 110764041 110764041 C T LRRN3 Nonsense_Mutation p.Q405* 0.16 TCGA-HU-8610-01 7 122765622 122765622 C A SLC13A1 Splice_Site p.X414_splice 0.08 TCGA-HU-8610-01 7 75643121 75643121 T C STYXL1 Missense_Mutation p.Y131C 0.19 deleterious(0) probably_damaging(0.998) TCGA-HU-8610-01 8 11400775 11400775 G A BLK Silent p.P14P 0.15 TCGA-HU-8610-01 8 133925324 133925324 C T TG Missense_Mutation p.R1398C 0.19 deleterious(0.05) possibly_damaging(0.874) TCGA-HU-8610-01 8 52322023 52322023 G A PXDNL Missense_Mutation p.R721W 0.17 deleterious(0) benign(0.019) TCGA-HU-8610-01 8 54871000 54871000 G T RGS20 Missense_Mutation p.E383D 0.24 deleterious(0.04) benign(0.042) TCGA-HU-8610-01 9 119461675 119461675 A T TRIM32 Missense_Mutation p.I552F 0.07 deleterious(0.01) probably_damaging(0.991) TCGA-HU-8610-01 9 140773594 140773594 C T CACNA1B Missense_Mutation p.P125S 0.14 deleterious(0.01) benign(0.044) TCGA-HU-8610-01 9 14720143 14720143 C T CER1 Missense_Mutation p.G250E 0.19 tolerated(0.52) benign(0.006) TCGA-HU-8610-01 X 144904988 144904988 C T SLITRK2 Nonsense_Mutation p.Q349* 0.25 TCGA-HU-8610-01 X 30269612 30269612 G A MAGEB1 Silent p.A334A 0.06 TCGA-HU-8610-01 X 91132884 91132884 C T PCDH11X Missense_Mutation p.P549S 0.08 tolerated(0.95) benign(0.044) TCGA-HU-A4G2-01 10 135053262 135053262 C T VENTX Silent p.G108G 0.28 TCGA-HU-A4G2-01 11 1019329 1019329 G - MUC6 Frame_Shift_Del p.R1326Gfs*4 0.31 TCGA-HU-A4G2-01 11 2154854 2154854 C T IGF2 Missense_Mutation p.V123I 0.22 deleterious(0.02) benign(0.223) TCGA-HU-A4G2-01 11 60975078 60975078 C T PGA3 Silent p.D149D 0.11 TCGA-HU-A4G2-01 11 62384806 62384806 C T B3GAT3 Missense_Mutation p.A91T 0.10 deleterious(0) probably_damaging(0.992) TCGA-HU-A4G2-01 12 97082748 97082748 G A C12orf55 Silent p.A2023A 0.17 TCGA-HU-A4G2-01 13 36909408 36909408 T C SPG20 Missense_Mutation p.Y187C 0.70 deleterious(0) probably_damaging(0.976) TCGA-HU-A4G2-01 14 104142035 104142035 A G KLC1 Missense_Mutation p.K441E 0.25 tolerated(0.26) benign(0.373) TCGA-HU-A4G2-01 14 106552477 106552477 G A IGHV3-9 Silent p.H54H 0.28 TCGA-HU-A4G2-01 14 47389321 47389321 G T MDGA2 Missense_Mutation p.P711Q 0.34 deleterious(0) possibly_damaging(0.59) TCGA-HU-A4G2-01 14 94936109 94936109 C T SERPINA9 Silent p.P41P 0.38 TCGA-HU-A4G2-01 15 57545542 57545543 - T TCF12 Frame_Shift_Ins p.L449Ffs*7 0.25 TCGA-HU-A4G2-01 15 62204164 62204164 G A VPS13C Nonsense_Mutation p.R2864* 0.33 TCGA-HU-A4G2-01 16 3072997 3072997 C A HCFC1R1 Missense_Mutation p.S95I 0.12 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-HU-A4G2-01 16 85948095 85948095 G A IRF8 Silent p.T190T 0.27 TCGA-HU-A4G2-01 17 1690239 1690239 G A SMYD4 Silent p.A583A 0.27 TCGA-HU-A4G2-01 17 79167923 79167923 C T AZI1 Silent p.L708L 0.54 TCGA-HU-A4G2-01 18 48593397 48593397 T G SMAD4 Missense_Mutation p.I383R 0.34 deleterious(0) probably_damaging(1) TCGA-HU-A4G2-01 18 63477134 63477134 C T CDH7 Silent p.P135P 0.23 TCGA-HU-A4G2-01 18 64172357 64172357 G A CDH19 Missense_Mutation p.R671W 0.22 deleterious(0) possibly_damaging(0.787) TCGA-HU-A4G2-01 19 10097410 10097410 G A COL5A3 Nonsense_Mutation p.Q724* 0.37 TCGA-HU-A4G2-01 19 1395423 1395423 G A NDUFS7 Missense_Mutation p.G193D 0.19 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-HU-A4G2-01 19 14749084 14749084 C T EMR3 Silent p.L439L 0.21 TCGA-HU-A4G2-01 19 17760371 17760371 C T UNC13A Missense_Mutation p.D489N 0.26 deleterious(0.01) probably_damaging(0.995) TCGA-HU-A4G2-01 19 22271562 22271562 T C ZNF257 Missense_Mutation p.I337T 0.08 deleterious(0.04) possibly_damaging(0.58) TCGA-HU-A4G2-01 19 39998562 39998562 C T DLL3 Missense_Mutation p.T589M 0.16 tolerated(0.07) benign(0.215) TCGA-HU-A4G2-01 19 55451629 55451629 C T NLRP7 Silent p.T186T 0.24 TCGA-HU-A4G2-01 19 56953317 56953317 C T ZNF667 Silent p.Q349Q 0.06 TCGA-HU-A4G2-01 19 9086045 9086045 T C MUC16 Missense_Mutation p.T1924A 0.11 unknown(0) TCGA-HU-A4G2-01 1 183908009 183908009 C T COLGALT2 Silent p.R589R 0.05 TCGA-HU-A4G2-01 1 204951139 204951139 G A NFASC Missense_Mutation p.G821R 0.19 deleterious(0.01) probably_damaging(1) TCGA-HU-A4G2-01 1 228474547 228474547 C T OBSCN Silent p.C3546C 0.21 TCGA-HU-A4G2-01 1 40947451 40947451 T C ZFP69 Silent p.D48D 0.34 TCGA-HU-A4G2-01 1 53676469 53676469 G A CPT2 Missense_Mutation p.G375S 0.22 deleterious(0) probably_damaging(0.999) TCGA-HU-A4G2-01 1 97981294 97981294 G T DPYD Missense_Mutation p.F576L 0.16 tolerated(0.33) benign(0.064) TCGA-HU-A4G2-01 20 61981063 61981063 G A CHRNA4 Missense_Mutation p.A567V 0.31 tolerated(0.19) benign(0.244) TCGA-HU-A4G2-01 22 17589441 17589441 C T IL17RA Silent p.I444I 0.29 TCGA-HU-A4G2-01 2 105858363 105858363 G A GPR45 Silent p.L16L 0.40 TCGA-HU-A4G2-01 2 158594066 158594066 C T ACVR1 Missense_Mutation p.D503N 0.31 deleterious(0.05) benign(0.311) TCGA-HU-A4G2-01 2 189856394 189856394 G T COL3A1 Splice_Site p.X300_splice 0.20 TCGA-HU-A4G2-01 2 234669132 234669132 T C UGT1A8 Intron 0.16 TCGA-HU-A4G2-01 2 55907854 55907854 T C PNPT1 Silent p.G186G 0.34 TCGA-HU-A4G2-01 2 74699174 74699174 T C MRPL53 3'UTR 0.25 TCGA-HU-A4G2-01 3 112693772 112693772 C T CD200R1 5'UTR 0.27 TCGA-HU-A4G2-01 3 129251585 129251585 C A RHO Missense_Mutation p.N302K 0.26 deleterious(0) probably_damaging(1) TCGA-HU-A4G2-01 3 178916726 178916726 G A PIK3CA Missense_Mutation p.R38H 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-HU-A4G2-01 3 38080788 38080788 G C DLEC1 Missense_Mutation p.W24C 0.06 tolerated_low_confidence(0.06) benign(0.003) TCGA-HU-A4G2-01 3 38592950 38592950 C T SCN5A Missense_Mutation p.R1638Q 0.24 deleterious(0) probably_damaging(0.997) TCGA-HU-A4G2-01 3 47378131 47378131 C T KLHL18 Silent p.N335N 0.27 TCGA-HU-A4G2-01 3 49053945 49053945 C T DALRD3 Splice_Site p.X355_splice 0.22 TCGA-HU-A4G2-01 4 119059258 119059258 C T NDST3 Missense_Mutation p.S425L 0.04 deleterious(0) possibly_damaging(0.731) TCGA-HU-A4G2-01 4 154633709 154633709 G A RNF175 Nonsense_Mutation p.R262* 0.19 TCGA-HU-A4G2-01 4 173269789 173269789 C T GALNTL6 Missense_Mutation p.P168S 0.33 deleterious(0) probably_damaging(1) TCGA-HU-A4G2-01 4 184182161 184182161 A G WWC2 Missense_Mutation p.N462S 0.24 tolerated(0.66) benign(0.015) TCGA-HU-A4G2-01 4 9452179 9452179 C T DEFB131 Missense_Mutation p.A51V 0.19 tolerated(0.16) benign(0.001) TCGA-HU-A4G2-01 5 127693009 127693009 G A FBN2 Missense_Mutation p.S878L 0.32 tolerated(0.08) benign(0.413) TCGA-HU-A4G2-01 5 15936847 15936847 G A FBXL7 Missense_Mutation p.R343Q 0.18 tolerated(0.16) probably_damaging(0.988) TCGA-HU-A4G2-01 6 107070695 107070695 C A RTN4IP1 Nonsense_Mutation p.E142* 0.39 TCGA-HU-A4G2-01 6 149395273 149395273 G A UST 3'UTR 0.16 TCGA-HU-A4G2-01 7 101844669 101844669 G A CUX1 Missense_Mutation p.G709S 0.04 tolerated(0.88) unknown(0) TCGA-HU-A4G2-01 7 148800964 148800964 G T ZNF425 Missense_Mutation p.Q667K 0.25 tolerated(0.1) benign(0.038) TCGA-HU-A4G2-01 7 23749944 23749944 G T STK31 Nonsense_Mutation p.E14* 0.16 TCGA-HU-A4G2-01 7 49815107 49815107 C A VWC2 Missense_Mutation p.L26M 0.32 deleterious_low_confidence(0.02) possibly_damaging(0.708) TCGA-HU-A4G2-01 8 92406542 92406542 G C SLC26A7 3'UTR 0.06 TCGA-HU-A4G2-01 9 90535638 90535638 G T SPATA31C1 RNA 0.03 TCGA-HU-A4G3-01 10 107015496 107015496 T G SORCS3 Missense_Mutation p.L1092V 0.12 tolerated(0.31) benign(0.279) TCGA-HU-A4G3-01 10 115668195 115668195 G T NHLRC2 Missense_Mutation p.S694I 0.14 deleterious(0.02) benign(0.163) TCGA-HU-A4G3-01 10 70446268 70446268 C T TET1 Silent p.V1736V 0.11 TCGA-HU-A4G3-01 11 103907764 103907764 G A DDI1 Missense_Mutation p.V72M 0.07 deleterious(0) probably_damaging(0.951) TCGA-HU-A4G3-01 11 51515611 51515611 C T OR4C46 Silent p.G110G 0.06 TCGA-HU-A4G3-01 11 66617864 66617864 C T PC Missense_Mutation p.D849N 0.08 deleterious(0) possibly_damaging(0.698) TCGA-HU-A4G3-01 11 72554388 72554388 T C FCHSD2 Intron 0.16 TCGA-HU-A4G3-01 11 73008215 73008215 C T P2RY6 Missense_Mutation p.R218C 0.17 tolerated(0.06) possibly_damaging(0.713) TCGA-HU-A4G3-01 11 77411864 77411864 C T RSF1 Missense_Mutation p.E804K 0.05 tolerated(0.1) probably_damaging(0.967) TCGA-HU-A4G3-01 11 7817743 7817743 C A OR5P2 Silent p.G249G 0.14 TCGA-HU-A4G3-01 11 7960148 7960148 C T OR10A3 Missense_Mutation p.R307K 0.20 tolerated(0.63) benign(0.005) TCGA-HU-A4G3-01 11 82642855 82642863 GCACTAGTG - C11orf82 In_Frame_Del p.L160_A162del 0.11 TCGA-HU-A4G3-01 11 8951070 8951070 A G C11orf16 Missense_Mutation p.S60P 0.19 tolerated(0.2) benign(0.003) TCGA-HU-A4G3-01 11 92616096 92616096 C T FAT3 Silent p.I4158I 0.17 TCGA-HU-A4G3-01 11 9435873 9435873 G A IPO7 Missense_Mutation p.R184H 0.19 tolerated(0.17) benign(0.103) TCGA-HU-A4G3-01 11 99932018 99932018 C T CNTN5 Missense_Mutation p.A352V 0.07 deleterious(0.03) probably_damaging(0.976) TCGA-HU-A4G3-01 12 122617978 122617978 T G MLXIP Silent p.A392A 0.08 TCGA-HU-A4G3-01 12 123380549 123380549 G A VPS37B Silent p.L21L 0.08 TCGA-HU-A4G3-01 12 132682498 132682498 G A GALNT9 Missense_Mutation p.R136W 0.33 tolerated(0.13) probably_damaging(0.996) TCGA-HU-A4G3-01 12 13717533 13717533 C T GRIN2B Missense_Mutation p.R880H 0.22 tolerated(0.05) benign(0.018) TCGA-HU-A4G3-01 12 4479463 4479463 T C FGF23 3'UTR 0.15 TCGA-HU-A4G3-01 13 114325921 114325921 G A GRK1 Missense_Mutation p.R312Q 0.16 tolerated(0.13) possibly_damaging(0.595) TCGA-HU-A4G3-01 13 41642805 41642805 C T WBP4 Missense_Mutation p.S124L 0.17 tolerated(0.12) benign(0.021) TCGA-HU-A4G3-01 13 60407354 60407354 C T DIAPH3 Missense_Mutation p.E972K 0.24 tolerated(0.81) benign(0.008) TCGA-HU-A4G3-01 13 66878689 66878689 A T PCDH9 3'UTR 0.18 TCGA-HU-A4G3-01 13 78475267 78475267 A - EDNRB Frame_Shift_Del p.Y383Ifs*3 0.15 TCGA-HU-A4G3-01 14 24601501 24601501 G A FITM1 Silent p.R116R 0.23 TCGA-HU-A4G3-01 15 101588825 101588825 G A LRRK1 Missense_Mutation p.E1088K 0.23 deleterious(0) probably_damaging(0.998) TCGA-HU-A4G3-01 15 31218089 31218089 G A FAN1 Missense_Mutation p.C812Y 0.11 deleterious(0) probably_damaging(0.999) TCGA-HU-A4G3-01 15 40660756 40660757 CT - DISP2 Frame_Shift_Del p.C816Sfs*40 0.14 TCGA-HU-A4G3-01 15 42695123 42695123 C T CAPN3 Silent p.I556I 0.19 TCGA-HU-A4G3-01 15 43621183 43621183 C A LCMT2 Missense_Mutation p.S502I 0.18 deleterious(0) possibly_damaging(0.62) TCGA-HU-A4G3-01 15 45007694 45007694 G A B2M Silent p.V47V 0.22 TCGA-HU-A4G3-01 15 48056943 48056944 - T SEMA6D Frame_Shift_Ins p.V403Cfs*7 0.18 TCGA-HU-A4G3-01 15 57545536 57545536 C - TCF12 Frame_Shift_Del p.T447Pfs*72 0.10 TCGA-HU-A4G3-01 16 51171162 51171162 G A SALL1 Missense_Mutation p.T1279M 0.20 deleterious(0.03) probably_damaging(0.962) TCGA-HU-A4G3-01 16 55616898 55616898 C T LPCAT2 Missense_Mutation p.T508M 0.13 tolerated(0.12) possibly_damaging(0.485) TCGA-HU-A4G3-01 16 57760055 57760055 G A CCDC135 Missense_Mutation p.A612T 0.11 tolerated(0.8) benign(0.001) TCGA-HU-A4G3-01 16 58545494 58545494 G A NDRG4 3'UTR 0.07 TCGA-HU-A4G3-01 16 67401083 67401083 A G LRRC36 Silent p.S306S 0.20 TCGA-HU-A4G3-01 16 68012304 68012304 G T DPEP3 Missense_Mutation p.N209K 0.27 tolerated(0.21) benign(0.053) TCGA-HU-A4G3-01 16 75563320 75563320 G A CHST5 Silent p.L321L 0.23 TCGA-HU-A4G3-01 16 78005791 78005791 C T VAT1L Silent p.G374G 0.08 TCGA-HU-A4G3-01 16 84217037 84217037 G A TAF1C Silent p.V99V 0.24 TCGA-HU-A4G3-01 16 89349170 89349170 C T ANKRD11 Silent p.S1260S 0.18 TCGA-HU-A4G3-01 17 39619277 39619277 G A KRT32 Missense_Mutation p.T341M 0.17 deleterious(0.02) benign(0.039) TCGA-HU-A4G3-01 17 45757451 45757451 G A KPNB1 Missense_Mutation p.D807N 0.12 tolerated(0.11) possibly_damaging(0.717) TCGA-HU-A4G3-01 17 4849090 4849090 A C PFN1 3'UTR 0.27 TCGA-HU-A4G3-01 17 48735443 48735443 G A ABCC3 Missense_Mutation p.G163S 0.13 tolerated(0.14) benign(0.285) TCGA-HU-A4G3-01 17 61623336 61623336 C T KCNH6 3'UTR 0.38 TCGA-HU-A4G3-01 17 6704226 6704226 T A TEKT1 Missense_Mutation p.T297S 0.24 tolerated(0.33) benign(0.004) TCGA-HU-A4G3-01 17 6704227 6704227 A T TEKT1 Silent p.I296I 0.24 TCGA-HU-A4G3-01 17 7357777 7357777 G A CHRNB1 Missense_Mutation p.V328M 0.07 deleterious(0.01) possibly_damaging(0.813) TCGA-HU-A4G3-01 17 76471426 76471426 C T DNAH17 Silent p.A2801A 0.24 TCGA-HU-A4G3-01 18 25727654 25727654 C T CDH2 Missense_Mutation p.G52E 0.17 deleterious(0.02) benign(0.104) TCGA-HU-A4G3-01 18 5416274 5416274 C A EPB41L3 Missense_Mutation p.C537F 0.20 tolerated(0.45) benign(0.003) TCGA-HU-A4G3-01 18 61322928 61322928 T G SERPINB3 Missense_Mutation p.N379T 0.21 deleterious(0.01) possibly_damaging(0.831) TCGA-HU-A4G3-01 19 15582775 15582775 C T PGLYRP2 Silent p.T423T 0.34 TCGA-HU-A4G3-01 19 17108020 17108020 C A CPAMD8 Silent p.A379A 0.16 TCGA-HU-A4G3-01 19 31039370 31039370 A G ZNF536 Silent p.K948K 0.14 TCGA-HU-A4G3-01 19 41289827 41289827 C T RAB4B Missense_Mutation p.R93W 0.10 deleterious(0) probably_damaging(0.999) TCGA-HU-A4G3-01 19 46215709 46215709 G A FBXO46 Missense_Mutation p.P349S 0.15 tolerated(0.37) probably_damaging(0.932) TCGA-HU-A4G3-01 19 50367302 50367302 G A PNKP Silent p.S221S 0.16 TCGA-HU-A4G3-01 19 50753938 50753938 C T MYH14 Missense_Mutation p.A608V 0.20 deleterious(0) probably_damaging(1) TCGA-HU-A4G3-01 19 52272221 52272221 G A FPR2 Missense_Mutation p.V104M 0.24 tolerated(0.35) benign(0.096) TCGA-HU-A4G3-01 19 55179194 55179194 C T LILRB4 Silent p.L384L 0.16 TCGA-HU-A4G3-01 19 56701542 56701542 C A ZSCAN5B Missense_Mutation p.R381I 0.11 deleterious(0) probably_damaging(0.995) TCGA-HU-A4G3-01 19 8387740 8387741 TC - KANK3 Frame_Shift_Del p.N817Pfs*66 0.12 TCGA-HU-A4G3-01 1 117564422 117564423 - A CD101 Frame_Shift_Ins p.F751Ifs*4 0.14 TCGA-HU-A4G3-01 1 149905551 149905551 C A MTMR11 Missense_Mutation p.R271L 0.15 deleterious(0.02) probably_damaging(0.996) TCGA-HU-A4G3-01 1 152327451 152327451 T G FLG2 Missense_Mutation p.Q937H 0.04 unknown(0) TCGA-HU-A4G3-01 1 155932779 155932779 G T ARHGEF2 Missense_Mutation p.P307H 0.19 tolerated(0.06) benign(0.007) TCGA-HU-A4G3-01 1 158299360 158299360 A T CD1B Missense_Mutation p.F229Y 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-HU-A4G3-01 1 162381814 162381814 G A SH2D1B 5'UTR 0.19 TCGA-HU-A4G3-01 1 173174638 173174638 C T TNFSF4 Intron 0.26 TCGA-HU-A4G3-01 1 181741317 181741317 G T CACNA1E Missense_Mutation p.D1697Y 0.15 deleterious(0.02) probably_damaging(0.978) TCGA-HU-A4G3-01 1 186084051 186084051 C T HMCN1 Missense_Mutation p.R3793C 0.22 possibly_damaging(0.906) TCGA-HU-A4G3-01 1 228550296 228550296 G A OBSCN Silent p.A7184A 0.09 TCGA-HU-A4G3-01 1 22925447 22925447 C T EPHA8 Silent p.N765N 0.29 TCGA-HU-A4G3-01 1 248308867 248308867 A C OR2M5 Missense_Mutation p.I140L 0.11 tolerated(0.75) benign(0.003) TCGA-HU-A4G3-01 1 27106861 27106861 C T ARID1A Nonsense_Mutation p.R2158* 0.09 TCGA-HU-A4G3-01 1 34312570 34312570 G A CSMD2 Silent p.P276P 0.12 TCGA-HU-A4G3-01 1 43804274 43804274 G A MPL Missense_Mutation p.V92M 0.12 tolerated(0.07) benign(0.118) TCGA-HU-A4G3-01 1 5923345 5923345 C T NPHP4 Missense_Mutation p.V1421M 0.15 deleterious(0) probably_damaging(0.988) TCGA-HU-A4G3-01 21 45861719 45861719 C T TRPM2 3'UTR 0.23 TCGA-HU-A4G3-01 21 47531946 47531946 G A COL6A2 Missense_Mutation p.V57I 0.21 tolerated(0.97) benign(0.017) TCGA-HU-A4G3-01 22 29727456 29727456 C T AP1B1 Missense_Mutation p.V836M 0.14 deleterious(0.04) benign(0.079) TCGA-HU-A4G3-01 2 10912017 10912017 G A ATP6V1C2 Missense_Mutation p.V175M 0.16 deleterious(0) probably_damaging(0.997) TCGA-HU-A4G3-01 2 116101485 116101485 A G DPP10 Missense_Mutation p.N94D 0.17 deleterious(0.02) benign(0.015) TCGA-HU-A4G3-01 2 136616960 136616960 T C MCM6 Missense_Mutation p.S425G 0.22 deleterious(0) probably_damaging(0.952) TCGA-HU-A4G3-01 2 138414450 138414450 G T THSD7B Missense_Mutation p.R1400L 0.16 tolerated(0.8) unknown(0) TCGA-HU-A4G3-01 2 240003864 240003864 G A HDAC4 Silent p.V857V 0.16 TCGA-HU-A4G3-01 2 26702456 26702465 CCGGCTCCTT - OTOF Frame_Shift_Del p.K657Gfs*6 0.35 TCGA-HU-A4G3-01 2 27587757 27587757 C T EIF2B4 Silent p.K420K 0.22 TCGA-HU-A4G3-01 2 90260089 90260089 A G IGKV1D-8 Silent p.K64K 0.21 TCGA-HU-A4G3-01 3 141162486 141162486 G C ZBTB38 Missense_Mutation p.G419A 0.16 tolerated(0.64) benign(0.004) TCGA-HU-A4G3-01 3 148597581 148597582 - A CPA3 Frame_Shift_Ins p.N163Efs*2 0.15 TCGA-HU-A4G3-01 3 168802553 168802553 T C MECOM 3'UTR 0.28 TCGA-HU-A4G3-01 3 74350678 74350678 T C CNTN3 Missense_Mutation p.K656E 0.15 tolerated(0.15) possibly_damaging(0.588) TCGA-HU-A4G3-01 3 74385746 74385746 A G CNTN3 Silent p.T476T 0.09 TCGA-HU-A4G3-01 3 9754697 9754697 C T CPNE9 Missense_Mutation p.T195M 0.25 deleterious(0) probably_damaging(0.94) TCGA-HU-A4G3-01 4 113538634 113538634 C T C4orf21 Missense_Mutation p.G855E 0.11 tolerated(1) benign(0.003) TCGA-HU-A4G3-01 4 151223860 151223860 T A LRBA Missense_Mutation p.Y2656F 0.20 deleterious(0.03) probably_damaging(0.996) TCGA-HU-A4G3-01 4 189012685 189012685 C G TRIML2 Missense_Mutation p.V336L 0.19 deleterious(0.01) benign(0.392) TCGA-HU-A4G3-01 5 1063979 1063979 C T SLC12A7 Missense_Mutation p.E907K 0.16 tolerated(0.05) benign(0.035) TCGA-HU-A4G3-01 5 128844930 128844930 T G ADAMTS19 Missense_Mutation p.I297S 0.24 tolerated(0.3) benign(0.101) TCGA-HU-A4G3-01 5 140595117 140595117 C T PCDHB13 Silent p.S474S 0.17 TCGA-HU-A4G3-01 5 140789451 140789451 G A PCDHGB6 Missense_Mutation p.R561Q 0.14 tolerated(0.21) benign(0.097) TCGA-HU-A4G3-01 5 141009657 141009657 C T HDAC3 Missense_Mutation p.R106H 0.19 deleterious(0.03) possibly_damaging(0.86) TCGA-HU-A4G3-01 5 145979951 145979951 T G PPP2R2B Missense_Mutation p.K291T 0.28 deleterious(0.01) possibly_damaging(0.615) TCGA-HU-A4G3-01 5 17275371 17275371 G A BASP1 Missense_Mutation p.D16N 0.19 tolerated(0.12) unknown(0) TCGA-HU-A4G3-01 5 33624378 33624378 A G ADAMTS12 Missense_Mutation p.C701R 0.11 deleterious(0) probably_damaging(0.999) TCGA-HU-A4G3-01 5 36122478 36122478 T C LMBRD2 Missense_Mutation p.K342E 0.09 tolerated(0.08) possibly_damaging(0.615) TCGA-HU-A4G3-01 5 37381716 37381716 G A WDR70 Missense_Mutation p.R35H 0.10 deleterious(0) probably_damaging(0.98) TCGA-HU-A4G3-01 5 41009497 41009497 G A MROH2B Missense_Mutation p.T1102I 0.06 tolerated(0.05) benign(0.007) TCGA-HU-A4G3-01 5 41065470 41065470 G A MROH2B Silent p.F108F 0.20 TCGA-HU-A4G3-01 6 121768197 121768197 G C GJA1 Missense_Mutation p.K68N 0.23 deleterious(0.01) probably_damaging(0.912) TCGA-HU-A4G3-01 6 139488014 139488014 C T HECA Missense_Mutation p.R289C 0.14 deleterious(0.02) probably_damaging(0.997) TCGA-HU-A4G3-01 6 34826708 34826708 A G UHRF1BP1 Missense_Mutation p.M859V 0.07 tolerated(1) benign(0.002) TCGA-HU-A4G3-01 6 66204928 66204928 A C EYS Missense_Mutation p.F126V 0.13 deleterious_low_confidence(0) probably_damaging(0.943) TCGA-HU-A4G3-01 7 100865902 100865902 G A ZNHIT1 Missense_Mutation p.G14R 0.24 tolerated(0.29) benign(0.365) TCGA-HU-A4G3-01 7 121753715 121753715 T G AASS Missense_Mutation p.E368A 0.07 deleterious(0.01) possibly_damaging(0.472) TCGA-HU-A4G3-01 7 19156576 19156576 C T TWIST1 Silent p.S123S 0.28 TCGA-HU-A4G3-01 7 44259846 44259846 G A CAMK2B Missense_Mutation p.H606Y 0.14 deleterious_low_confidence(0.01) benign(0.365) TCGA-HU-A4G3-01 7 66274183 66274183 C A KCTD7 Missense_Mutation p.P463Q 0.09 tolerated(0.35) benign(0.232) TCGA-HU-A4G3-01 8 105235914 105235914 C T RIMS2 Intron 0.21 TCGA-HU-A4G3-01 8 3046522 3046522 C T CSMD1 Missense_Mutation p.G1804S 0.26 probably_damaging(0.952) TCGA-HU-A4G3-01 8 35588553 35588553 G A UNC5D Missense_Mutation p.G569S 0.12 deleterious(0.01) probably_damaging(0.919) TCGA-HU-A4G3-01 8 38810163 38810163 T A PLEKHA2 Missense_Mutation p.W215R 0.12 deleterious(0) probably_damaging(1) TCGA-HU-A4G3-01 8 80942415 80942417 GAA - MRPS28 In_Frame_Del p.F23del 0.23 TCGA-HU-A4G3-01 9 135458244 135458244 C T BARHL1 Silent p.P20P 0.17 TCGA-HU-A4G3-01 9 74975570 74975570 T G ZFAND5 Missense_Mutation p.Q42P 0.13 deleterious(0.01) possibly_damaging(0.883) TCGA-HU-A4G3-01 9 74975571 74975571 G T ZFAND5 Missense_Mutation p.Q42K 0.14 deleterious(0.01) benign(0.437) TCGA-HU-A4G3-01 X 134983755 134983755 G A SAGE1 Missense_Mutation p.G42E 0.09 deleterious(0.01) possibly_damaging(0.774) TCGA-HU-A4G3-01 X 140993377 140993377 T C MAGEC1 Missense_Mutation p.S63P 0.07 deleterious_low_confidence(0.01) benign(0.307) TCGA-HU-A4G3-01 X 92927365 92927365 G A NAP1L3 Silent p.D313D 0.18 TCGA-HU-A4G6-01 10 101578969 101578969 T A ABCC2 Missense_Mutation p.F855I 0.20 deleterious(0) possibly_damaging(0.689) TCGA-HU-A4G6-01 10 107007060 107007060 G T SORCS3 Missense_Mutation p.G1026C 0.31 deleterious(0.01) possibly_damaging(0.841) TCGA-HU-A4G6-01 10 134622103 134622103 C T TTC40 Missense_Mutation p.R2657H 0.52 tolerated_low_confidence(0.17) benign(0.001) TCGA-HU-A4G6-01 10 26385407 26385407 A T MYO3A Missense_Mutation p.R554W 0.40 deleterious(0) probably_damaging(0.995) TCGA-HU-A4G6-01 10 79579661 79579661 G A DLG5 Missense_Mutation p.P1173L 0.47 tolerated(0.67) benign(0.011) TCGA-HU-A4G6-01 10 90438326 90438326 T - LIPF Frame_Shift_Del p.Y373Tfs*30 0.29 TCGA-HU-A4G6-01 11 100170065 100170065 G A CNTN5 Missense_Mutation p.V853I 0.16 deleterious(0.02) probably_damaging(0.956) TCGA-HU-A4G6-01 11 124829033 124829033 A T CCDC15 Missense_Mutation p.E67V 0.27 deleterious(0) probably_damaging(0.947) TCGA-HU-A4G6-01 11 5153403 5153403 A G OR52A5 Missense_Mutation p.L157P 0.21 deleterious(0) probably_damaging(0.982) TCGA-HU-A4G6-01 11 82644674 82644674 G C C11orf82 Missense_Mutation p.S765T 0.35 tolerated(0.11) probably_damaging(0.955) TCGA-HU-A4G6-01 12 2676928 2676928 C T CACNA1C Silent p.C621C 0.33 TCGA-HU-A4G6-01 12 4554596 4554596 C T FGF6 Silent p.T47T 0.28 TCGA-HU-A4G6-01 12 52841341 52841341 C A KRT6B Missense_Mutation p.V481F 0.50 deleterious(0.05) probably_damaging(0.938) TCGA-HU-A4G6-01 13 114202736 114202736 G A TMCO3 Missense_Mutation p.R630Q 0.11 deleterious(0.02) possibly_damaging(0.906) TCGA-HU-A4G6-01 13 36223810 36223810 C A NBEA Missense_Mutation p.P2576T 0.17 deleterious(0) probably_damaging(0.991) TCGA-HU-A4G6-01 13 37014260 37014260 G A CCNA1 Silent p.Q346Q 0.55 TCGA-HU-A4G6-01 13 46287489 46287489 C A SPERT Missense_Mutation p.A110D 0.20 deleterious(0) probably_damaging(0.98) TCGA-HU-A4G6-01 14 24538363 24538363 C T LRRC16B Missense_Mutation p.R1334W 0.22 deleterious_low_confidence(0) unknown(0) TCGA-HU-A4G6-01 15 100214776 100214776 C T MEF2A Missense_Mutation p.S192F 0.25 deleterious(0) probably_damaging(0.983) TCGA-HU-A4G6-01 15 34102755 34102755 G A RYR3 Missense_Mutation p.V3368M 0.63 probably_damaging(0.965) TCGA-HU-A4G6-01 15 34158855 34158855 C T AVEN Missense_Mutation p.E350K 0.31 deleterious(0) probably_damaging(0.999) TCGA-HU-A4G6-01 15 45442866 45442866 G A DUOX1 Missense_Mutation p.R952Q 0.54 tolerated(0.25) benign(0.138) TCGA-HU-A4G6-01 15 48063347 48063347 T C SEMA6D Missense_Mutation p.S863P 0.57 tolerated(0.76) benign(0) TCGA-HU-A4G6-01 16 1035103 1035103 G A SOX8 Missense_Mutation p.R353Q 0.50 tolerated(1) benign(0.001) TCGA-HU-A4G6-01 16 3614583 3614583 C A NLRC3 Missense_Mutation p.A166S 0.33 tolerated(0.51) benign(0.011) TCGA-HU-A4G6-01 16 47143563 47143563 G A NETO2 Silent p.F238F 0.29 TCGA-HU-A4G6-01 16 58001053 58001053 G A CNGB1 Silent p.A46A 0.44 TCGA-HU-A4G6-01 16 613320 613320 G A C16orf11 Missense_Mutation p.R9H 0.45 tolerated(0.06) benign(0.059) TCGA-HU-A4G6-01 16 90162685 90162686 TG - TUBB8P7 RNA 0.26 TCGA-HU-A4G6-01 17 57774730 57774730 C T PTRH2 3'UTR 0.20 TCGA-HU-A4G6-01 17 64683380 64683397 TACATTGTAAGTGGTCTC - PRKCA Splice_Site p.X228_splice 0.38 TCGA-HU-A4G6-01 18 61565002 61565002 C T SERPINB2 Silent p.P153P 0.30 TCGA-HU-A4G6-01 19 14591487 14591487 C T GIPC1 Missense_Mutation p.R131H 0.30 deleterious(0.05) benign(0.333) TCGA-HU-A4G6-01 19 37211224 37211224 A C ZNF567 Missense_Mutation p.Y502S 0.22 deleterious(0.02) probably_damaging(1) TCGA-HU-A4G6-01 19 9086755 9086755 C A MUC16 Missense_Mutation p.S1687I 0.32 unknown(0) TCGA-HU-A4G6-01 1 109811770 109811770 G A CELSR2 Missense_Mutation p.A2224T 0.30 tolerated(0.58) benign(0.016) TCGA-HU-A4G6-01 1 111059876 111059876 A C KCNA10 Nonstop_Mutation p.*512Gext*? 0.20 TCGA-HU-A4G6-01 1 118165775 118165775 C - FAM46C Frame_Shift_Del p.H96Mfs*22 0.36 TCGA-HU-A4G6-01 1 158618325 158618325 T G SPTA1 Silent p.R1230R 0.55 TCGA-HU-A4G6-01 1 16953705 16953705 G A CROCCP2 3'Flank 0.11 TCGA-HU-A4G6-01 1 198828005 198828005 C T MIR181B1 RNA 0.40 TCGA-HU-A4G6-01 1 204923461 204923461 C T NFASC Missense_Mutation p.R121C 0.27 deleterious(0) probably_damaging(0.979) TCGA-HU-A4G6-01 1 236730052 236730052 T G HEATR1 Missense_Mutation p.Q1401P 0.38 deleterious(0.01) probably_damaging(0.961) TCGA-HU-A4G6-01 1 247588491 247588491 C T NLRP3 Silent p.G582G 0.07 TCGA-HU-A4G6-01 1 27100852 27100852 C - ARID1A Frame_Shift_Del p.P1379Lfs*102 0.33 TCGA-HU-A4G6-01 1 79404922 79404922 T A ELTD1 Missense_Mutation p.H116L 0.36 deleterious_low_confidence(0.02) benign(0.005) TCGA-HU-A4G6-01 20 18794852 18794852 C T SCP2D1 Silent p.A131A 0.18 TCGA-HU-A4G6-01 20 2381041 2381041 G A TGM6 Missense_Mutation p.V314M 0.32 deleterious(0) benign(0.393) TCGA-HU-A4G6-01 20 35724349 35724349 G T RBL1 Missense_Mutation p.G54V 0.25 probably_damaging(0.98) TCGA-HU-A4G6-01 20 40733227 40733227 T G PTPRT Missense_Mutation p.Q1174H 0.14 tolerated(0.29) probably_damaging(0.986) TCGA-HU-A4G6-01 20 47605094 47605094 C A ARFGEF2 Missense_Mutation p.L810M 0.24 deleterious(0) probably_damaging(0.995) TCGA-HU-A4G6-01 21 43165916 43165917 - A RIPK4 Intron 0.28 TCGA-HU-A4G6-01 22 17119473 17119473 T C TPTEP1 RNA 0.34 TCGA-HU-A4G6-01 22 26709789 26709789 G A SEZ6L Missense_Mutation p.E646K 0.29 deleterious(0.03) benign(0.166) TCGA-HU-A4G6-01 22 29885490 29885490 C A NEFH Missense_Mutation p.P621T 0.62 deleterious(0) possibly_damaging(0.803) TCGA-HU-A4G6-01 22 46724658 46724658 C T GTSE1 Missense_Mutation p.P600S 0.30 tolerated(0.11) possibly_damaging(0.747) TCGA-HU-A4G6-01 2 101622724 101622724 A T RPL31 Intron 0.39 TCGA-HU-A4G6-01 2 110881384 110881384 C T NPHP1 Missense_Mutation p.R729K 0.51 tolerated(0.08) probably_damaging(0.997) TCGA-HU-A4G6-01 2 15742674 15742674 A G DDX1 Missense_Mutation p.I104V 0.43 tolerated(0.68) benign(0.085) TCGA-HU-A4G6-01 2 167055493 167055493 G A SCN9A Missense_Mutation p.R1875W 0.43 tolerated(0.15) probably_damaging(1) TCGA-HU-A4G6-01 2 171854267 171854267 T C TLK1 Silent p.V657V 0.47 TCGA-HU-A4G6-01 2 175432646 175432646 G A WIPF1 Missense_Mutation p.P429S 0.21 tolerated(0.06) probably_damaging(0.979) TCGA-HU-A4G6-01 2 176987764 176987764 G T HOXD9 Missense_Mutation p.A90S 0.57 tolerated(0.2) possibly_damaging(0.836) TCGA-HU-A4G6-01 2 178417162 178417162 G A TTC30B Silent p.A110A 0.15 TCGA-HU-A4G6-01 2 179393870 179393870 G C TTN Silent p.V35536V 0.47 TCGA-HU-A4G6-01 2 36749368 36749368 C T CRIM1 Silent p.S780S 0.47 TCGA-HU-A4G6-01 2 9008633 9008633 G A MBOAT2 Silent p.D310D 0.14 TCGA-HU-A4G6-01 2 98804462 98804462 G A VWA3B Missense_Mutation p.A446T 0.16 deleterious(0) probably_damaging(1) TCGA-HU-A4G6-01 3 122630821 122630821 C T SEMA5B Missense_Mutation p.A1052T 0.54 tolerated(0.71) benign(0.002) TCGA-HU-A4G6-01 3 160945112 160945112 T A NMD3 Missense_Mutation p.I86N 0.05 deleterious(0) possibly_damaging(0.847) TCGA-HU-A4G6-01 3 160945113 160945113 C A NMD3 Silent p.I86I 0.05 TCGA-HU-A4G6-01 3 33055719 33055719 G A GLB1 Silent p.C521C 0.78 TCGA-HU-A4G6-01 3 41266103 41266103 G A CTNNB1 Missense_Mutation p.G34R 0.79 deleterious(0) probably_damaging(0.997) TCGA-HU-A4G6-01 4 126239828 126239828 A C FAT4 Missense_Mutation p.E754D 0.17 probably_damaging(0.997) TCGA-HU-A4G6-01 4 128951826 128951826 A G C4orf29 Missense_Mutation p.R414G 0.06 deleterious(0) probably_damaging(1) TCGA-HU-A4G6-01 4 187209681 187209681 A G F11 Silent p.E597E 0.28 TCGA-HU-A4G6-01 5 140230532 140230532 C T PCDHA9 Intron 0.24 TCGA-HU-A4G6-01 5 148207465 148207465 C T ADRB2 Silent p.N357N 0.57 TCGA-HU-A4G6-01 5 150050196 150050196 G A MYOZ3 Missense_Mutation p.R71Q 0.32 tolerated(0.45) benign(0.008) TCGA-HU-A4G6-01 5 177156542 177156542 G T FAM153A Missense_Mutation p.L216M 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.82) TCGA-HU-A4G6-01 6 150710675 150710675 G A IYD Silent p.T122T 0.32 TCGA-HU-A4G6-01 6 169051410 169051410 G A SMOC2 Silent p.A330A 0.30 TCGA-HU-A4G6-01 6 22569762 22569762 G A HDGFL1 5'Flank 0.27 TCGA-HU-A4G6-01 6 31938556 31938579 GTTGGTGTTAACCTCCCCAGAGGG - DXO In_Frame_Del p.P206_N213del 0.23 TCGA-HU-A4G6-01 6 74110065 74110065 T G DDX43 Missense_Mutation p.Y139D 0.10 deleterious(0.03) benign(0.022) TCGA-HU-A4G6-01 6 88119576 88119576 G A C6ORF165 Missense_Mutation p.E7K 0.23 deleterious(0) probably_damaging(0.988) TCGA-HU-A4G6-01 7 100552935 100552935 G A MUC3A Missense_Mutation p.G527E 0.17 tolerated(0.07) benign(0.277) TCGA-HU-A4G6-01 7 102584659 102584659 G A LRRC17 Missense_Mutation p.A311T 0.23 tolerated(0.18) possibly_damaging(0.658) TCGA-HU-A4G6-01 7 116811007 116811007 A C ST7 Missense_Mutation p.Q352P 0.16 deleterious(0) probably_damaging(0.95) TCGA-HU-A4G6-01 7 23183596 23183596 G C KLHL7 Missense_Mutation p.A249P 0.53 tolerated(0.37) benign(0.004) TCGA-HU-A4G6-01 7 6803643 6803643 G A RSPH10B2 Missense_Mutation p.G162S 0.17 deleterious(0.01) probably_damaging(0.934) TCGA-HU-A4G6-01 8 10555329 10555329 C T C8orf74 Silent p.A154A 0.23 TCGA-HU-A4G6-01 8 133192544 133192544 C A KCNQ3 Missense_Mutation p.V213F 0.17 deleterious(0) probably_damaging(0.985) TCGA-HU-A4G6-01 8 17612060 17612060 G C MTUS1 Silent p.V419V 0.27 TCGA-HU-A4G6-01 9 131503885 131503885 C T ZER1 Missense_Mutation p.D556N 0.13 deleterious(0) probably_damaging(0.999) TCGA-HU-A4G6-01 9 139391079 139391079 G C NOTCH1 Missense_Mutation p.T2371S 0.39 tolerated(0.75) benign(0.011) TCGA-HU-A4G6-01 9 140093635 140093635 C A TPRN Missense_Mutation p.G510V 0.59 tolerated(0.22) probably_damaging(0.979) TCGA-HU-A4G6-01 9 35715063 35715063 C T TLN1 Missense_Mutation p.R916H 0.15 tolerated(0.11) benign(0.106) TCGA-HU-A4G6-01 X 105937253 105937254 CA - RNF128 Frame_Shift_Del p.S8Ffs*13 0.41 TCGA-HU-A4G6-01 X 127185409 127185409 G A ACTRT1 Silent p.P259P 0.91 TCGA-HU-A4G6-01 X 128622973 128622973 T A SMARCA1 Nonsense_Mutation p.K680* 0.87 TCGA-HU-A4G6-01 X 153698478 153698478 G A PLXNA3 Missense_Mutation p.E1652K 0.91 deleterious(0) probably_damaging(0.998) TCGA-HU-A4G6-01 X 41000004 41000004 A G USP9X Silent p.Q250Q 0.95 TCGA-HU-A4G6-01 X 79283522 79283522 C T TBX22 Missense_Mutation p.P299L 0.09 tolerated(0.07) possibly_damaging(0.548) TCGA-HU-A4G8-01 10 100146994 100146994 T C PYROXD2 Silent p.P506P 0.37 TCGA-HU-A4G8-01 10 100147054 100147054 G A PYROXD2 Silent p.C486C 0.21 TCGA-HU-A4G8-01 10 100148258 100148258 T C PYROXD2 Missense_Mutation p.I434V 0.29 tolerated(0.08) benign(0.019) TCGA-HU-A4G8-01 10 100189343 100189343 G A HPS1 Silent p.G308G 0.31 TCGA-HU-A4G8-01 10 101163327 101163327 G T GOT1 Silent p.S286S 0.26 TCGA-HU-A4G8-01 10 102257433 102257433 C T SEC31B Missense_Mutation p.E661K 0.26 tolerated(0.43) benign(0.155) TCGA-HU-A4G8-01 10 102684424 102684424 C - FAM178A Frame_Shift_Del p.P557Lfs*37 0.22 TCGA-HU-A4G8-01 10 102748601 102748601 G - C10orf2 Frame_Shift_Del p.G213Afs*7 0.20 TCGA-HU-A4G8-01 10 102762432 102762432 G A LZTS2 Missense_Mutation p.R46H 0.26 tolerated(0.17) benign(0.431) TCGA-HU-A4G8-01 10 102824707 102824707 G T KAZALD1 3'UTR 0.19 TCGA-HU-A4G8-01 10 102824715 102824715 A G KAZALD1 3'UTR 0.16 TCGA-HU-A4G8-01 10 103901158 103901158 C - PPRC1 Frame_Shift_Del p.P966Lfs*114 0.15 TCGA-HU-A4G8-01 10 103988245 103988245 T C ELOVL3 Missense_Mutation p.V102A 0.25 deleterious(0) benign(0.349) TCGA-HU-A4G8-01 10 103991384 103991386 CTC - PITX3 In_Frame_Del p.E94del 0.34 TCGA-HU-A4G8-01 10 104241809 104241809 G A ACTR1A Missense_Mutation p.R292C 0.24 deleterious(0) possibly_damaging(0.893) TCGA-HU-A4G8-01 10 105187133 105187133 T C PDCD11 Missense_Mutation p.L1118P 0.24 deleterious(0) probably_damaging(1) TCGA-HU-A4G8-01 10 105361462 105361468 CCACCCC - SH3PXD2A 3'UTR 0.25 TCGA-HU-A4G8-01 10 106121892 106121892 G A CCDC147 Missense_Mutation p.E135K 0.27 tolerated(0.13) benign(0.401) TCGA-HU-A4G8-01 10 106160488 106160488 T C CCDC147 Silent p.D622D 0.25 TCGA-HU-A4G8-01 10 113920602 113920602 C T GPAM Missense_Mutation p.E507K 0.25 tolerated(0.41) possibly_damaging(0.453) TCGA-HU-A4G8-01 10 114200317 114200317 G A ZDHHC6 Missense_Mutation p.A219V 0.17 deleterious(0) probably_damaging(0.958) TCGA-HU-A4G8-01 10 114925707 114925707 G A TCF7L2 Silent p.S595S 0.25 TCGA-HU-A4G8-01 10 115970683 115970683 T - TDRD1 Frame_Shift_Del p.Y541Ifs*37 0.26 TCGA-HU-A4G8-01 10 120967430 120967430 A G GRK5 Translation_Start_Site p.M1? 0.28 deleterious(0) possibly_damaging(0.761) TCGA-HU-A4G8-01 10 1230952 1230952 G A ADARB2 Missense_Mutation p.P631L 0.35 deleterious(0.03) benign(0.362) TCGA-HU-A4G8-01 10 123903223 123903223 T C TACC2 Splice_Site p.X1945_splice 0.13 TCGA-HU-A4G8-01 10 126631559 126631559 C A ZRANB1 Missense_Mutation p.A166D 0.22 deleterious(0.01) benign(0.254) TCGA-HU-A4G8-01 10 127548316 127548316 T C DHX32 Missense_Mutation p.I235M 0.34 tolerated(0.49) benign(0.129) TCGA-HU-A4G8-01 10 129913862 129913862 G A MKI67 Silent p.Y270Y 0.28 TCGA-HU-A4G8-01 10 131671783 131671783 G A EBF3 Silent p.S238S 0.21 TCGA-HU-A4G8-01 10 135342020 135342020 C T CYP2E1 Silent p.Y71Y 0.18 TCGA-HU-A4G8-01 10 13642313 13642313 G A PRPF18 Missense_Mutation p.E72K 0.16 tolerated(0.49) benign(0.004) TCGA-HU-A4G8-01 10 16996544 16996544 A G CUBN Missense_Mutation p.Y1567H 0.12 tolerated(0.14) benign(0.049) TCGA-HU-A4G8-01 10 17276790 17276790 C A VIM Silent p.T327T 0.30 TCGA-HU-A4G8-01 10 18289716 18289716 C T SLC39A12 Missense_Mutation p.T574M 0.21 deleterious(0) probably_damaging(0.998) TCGA-HU-A4G8-01 10 21141528 21141528 A G NEBL Silent p.D318D 0.23 TCGA-HU-A4G8-01 10 22048203 22048203 T C DNAJC1 Missense_Mutation p.T498A 0.25 deleterious(0.01) probably_damaging(0.923) TCGA-HU-A4G8-01 10 24833918 24833918 C T KIAA1217 Silent p.S1740S 0.21 TCGA-HU-A4G8-01 10 25887977 25887977 A - GPR158 Frame_Shift_Del p.K1143Rfs*23 0.20 TCGA-HU-A4G8-01 10 26385373 26385373 A G MYO3A Silent p.L542L 0.29 TCGA-HU-A4G8-01 10 27037590 27037592 TTC - ABI1 In_Frame_Del p.K478del 0.29 TCGA-HU-A4G8-01 10 27295869 27295869 T - ANKRD26 Frame_Shift_Del p.N1659Ifs*2 0.19 TCGA-HU-A4G8-01 10 29821473 29821473 C T SVIL Missense_Mutation p.C608Y 0.16 deleterious(0) benign(0.003) TCGA-HU-A4G8-01 10 30336501 30336501 C - KIAA1462 Frame_Shift_Del p.E81Sfs*69 0.22 TCGA-HU-A4G8-01 10 31809819 31809819 A G ZEB1 Missense_Mutation p.D520G 0.30 tolerated(0.06) benign(0.418) TCGA-HU-A4G8-01 10 34601219 34601219 A - PARD3 Intron 0.26 TCGA-HU-A4G8-01 10 35930056 35930056 T G FZD8 Missense_Mutation p.K101T 0.30 tolerated(0.39) unknown(0) TCGA-HU-A4G8-01 10 37414926 37414926 G A ANKRD30A Missense_Mutation p.A15T 0.21 tolerated(0.22) benign(0.163) TCGA-HU-A4G8-01 10 43602002 43602002 C T RET Missense_Mutation p.A349V 0.25 tolerated(0.15) benign(0.178) TCGA-HU-A4G8-01 10 43659393 43659393 C T CSGALNACT2 Nonsense_Mutation p.R354* 0.23 TCGA-HU-A4G8-01 10 43882438 43882438 T C HNRNPF Missense_Mutation p.K299E 0.30 tolerated(0.05) possibly_damaging(0.466) TCGA-HU-A4G8-01 10 48416366 48416366 G A GDF2 Missense_Mutation p.R110W 0.15 deleterious(0) probably_damaging(1) TCGA-HU-A4G8-01 10 50701224 50701224 G A ERCC6 Missense_Mutation p.T587M 0.20 tolerated(0.08) benign(0.16) TCGA-HU-A4G8-01 10 50902655 50902655 C T C10orf53 Intron 0.14 TCGA-HU-A4G8-01 10 55943317 55943317 C T PCDH15 Missense_Mutation p.V493I 0.25 tolerated(0.14) probably_damaging(0.954) TCGA-HU-A4G8-01 10 5772584 5772584 C T FAM208B Missense_Mutation p.R208C 0.25 deleterious(0) benign(0.28) TCGA-HU-A4G8-01 10 61827734 61827734 C A ANK3 Missense_Mutation p.R4093M 0.29 probably_damaging(0.997) TCGA-HU-A4G8-01 10 61834216 61834217 - G ANK3 Frame_Shift_Ins p.Q2142Tfs*4 0.19 TCGA-HU-A4G8-01 10 70138358 70138358 C T RUFY2 Intron 0.16 TCGA-HU-A4G8-01 10 70670981 70670982 - A DDX50 Frame_Shift_Ins p.S209Kfs*28 0.22 TCGA-HU-A4G8-01 10 73437370 73437370 G A CDH23 Missense_Mutation p.V150M 0.24 tolerated(0.27) benign(0.03) TCGA-HU-A4G8-01 10 73464873 73464873 C T CDH23 Missense_Mutation p.T572M 0.26 deleterious(0.01) probably_damaging(1) TCGA-HU-A4G8-01 10 73827479 73827479 C T SPOCK2 Missense_Mutation p.G201S 0.15 tolerated(0.12) probably_damaging(0.983) TCGA-HU-A4G8-01 10 74879892 74879892 T G NUDT13 Missense_Mutation p.L67R 0.22 tolerated(0.43) benign(0.024) TCGA-HU-A4G8-01 10 75525559 75525560 - C SEC24C Frame_Shift_Ins p.Q459Pfs*17 0.28 TCGA-HU-A4G8-01 10 75541869 75541869 G C CHCHD1 Silent p.R12R 0.23 TCGA-HU-A4G8-01 10 75565424 75565424 C T NDST2 Missense_Mutation p.R556H 0.21 tolerated(0.09) possibly_damaging(0.72) TCGA-HU-A4G8-01 10 76603125 76603125 G A KAT6B Silent p.P170P 0.15 TCGA-HU-A4G8-01 10 78870034 78870034 A G KCNMA1 Missense_Mutation p.V343A 0.25 deleterious(0) benign(0.358) TCGA-HU-A4G8-01 10 83635520 83635520 G A NRG3 Missense_Mutation p.A142T 0.29 tolerated(0.1) benign(0.009) TCGA-HU-A4G8-01 10 85997363 85997363 G A LRIT1 Missense_Mutation p.R68W 0.24 deleterious(0) probably_damaging(0.976) TCGA-HU-A4G8-01 10 86017717 86017717 C T RGR Silent p.Y237Y 0.34 TCGA-HU-A4G8-01 10 890939 890939 T - LARP4B Frame_Shift_Del p.T163Hfs*47 0.27 TCGA-HU-A4G8-01 10 89312305 89312305 A G MINPP1 3'UTR 0.24 TCGA-HU-A4G8-01 10 90342924 90342924 G A RNLS Silent p.G8G 0.28 TCGA-HU-A4G8-01 10 93244943 93244943 C T HECTD2 Missense_Mutation p.A326V 0.19 deleterious(0.02) benign(0.102) TCGA-HU-A4G8-01 10 95116503 95116503 G A MYOF Missense_Mutation p.R1075C 0.21 deleterious(0.03) benign(0.009) TCGA-HU-A4G8-01 10 97402837 97402837 C A ALDH18A1 Missense_Mutation p.R72I 0.27 deleterious(0) probably_damaging(0.999) TCGA-HU-A4G8-01 10 97920369 97920369 A - ZNF518A RNA 0.27 TCGA-HU-A4G8-01 10 97987266 97987266 G A BLNK Silent p.P87P 0.23 TCGA-HU-A4G8-01 10 98355339 98355339 G A PIK3AP1 Missense_Mutation p.R805C 0.27 deleterious(0) unknown(0) TCGA-HU-A4G8-01 10 99237151 99237151 T C MMS19 Missense_Mutation p.H149R 0.20 tolerated(0.75) benign(0.004) TCGA-HU-A4G8-01 11 102650395 102650395 T - MMP10 Frame_Shift_Del p.I63Sfs*12 0.18 TCGA-HU-A4G8-01 11 103048395 103048395 G A DYNC2H1 Silent p.A1995A 0.35 TCGA-HU-A4G8-01 11 104912364 104912364 G A CARD16 Silent p.D119D 0.20 TCGA-HU-A4G8-01 11 10521642 10521642 T C AMPD3 Missense_Mutation p.F532L 0.25 deleterious(0.03) possibly_damaging(0.77) TCGA-HU-A4G8-01 11 10536407 10536407 C - RNF141 3'UTR 0.14 TCGA-HU-A4G8-01 11 105967614 105967614 C T AASDHPPT Nonsense_Mutation p.R304* 0.21 TCGA-HU-A4G8-01 11 107578563 107578563 A G SLN Nonstop_Mutation p.*32Rext*9 0.20 TCGA-HU-A4G8-01 11 10786257 10786257 G A CTR9 Missense_Mutation p.E526K 0.30 tolerated(0.06) possibly_damaging(0.812) TCGA-HU-A4G8-01 11 1096474 1096474 C T MUC2 Missense_Mutation p.P2167S 0.22 unknown(0) TCGA-HU-A4G8-01 11 111953722 111953722 T C C11orf57 3'UTR 0.27 TCGA-HU-A4G8-01 11 113078026 113078026 C T NCAM1 Silent p.T283T 0.23 TCGA-HU-A4G8-01 11 114168764 114168764 C T NNMT Silent p.V82V 0.18 TCGA-HU-A4G8-01 11 114320764 114320764 G A REXO2 3'UTR 0.26 TCGA-HU-A4G8-01 11 11454168 11454168 C T GALNT18 Missense_Mutation p.E199K 0.33 tolerated(0.69) benign(0.041) TCGA-HU-A4G8-01 11 117267846 117267846 G - CEP164 Frame_Shift_Del p.V1108* 0.16 TCGA-HU-A4G8-01 11 117280388 117280388 T G CEP164 Missense_Mutation p.L1268R 0.25 deleterious(0) probably_damaging(0.996) TCGA-HU-A4G8-01 11 117280532 117280532 G A CEP164 Missense_Mutation p.G1316D 0.28 tolerated(0.06) benign(0.047) TCGA-HU-A4G8-01 11 117789217 117789217 A G TMPRSS13 Missense_Mutation p.Y120H 0.22 tolerated_low_confidence(0.24) benign(0.013) TCGA-HU-A4G8-01 11 118498395 118498395 C A PHLDB1 Missense_Mutation p.P286T 0.25 deleterious(0) probably_damaging(0.995) TCGA-HU-A4G8-01 11 122650309 122650309 G A UBASH3B Silent p.S169S 0.21 TCGA-HU-A4G8-01 11 123484323 123484323 G A GRAMD1B Silent p.T585T 0.20 TCGA-HU-A4G8-01 11 123624938 123624938 G A OR6X1 Silent p.L97L 0.17 TCGA-HU-A4G8-01 11 124180241 124180241 C T OR8D1 Missense_Mutation p.C141Y 0.25 deleterious(0.03) benign(0.132) TCGA-HU-A4G8-01 11 126136163 126136163 G T SRPR Missense_Mutation p.T284N 0.23 tolerated(0.49) benign(0.004) TCGA-HU-A4G8-01 11 126391268 126391268 G A KIRREL3 Silent p.Y125Y 0.40 TCGA-HU-A4G8-01 11 128680622 128680622 C T FLI1 Silent p.A366A 0.21 TCGA-HU-A4G8-01 11 129743689 129743689 G A NFRKB Missense_Mutation p.P859L 0.24 deleterious_low_confidence(0.01) probably_damaging(0.965) TCGA-HU-A4G8-01 11 129814773 129814773 C A PRDM10 Missense_Mutation p.G219C 0.20 deleterious(0.01) probably_damaging(1) TCGA-HU-A4G8-01 11 129999046 129999046 G A APLP2 Missense_Mutation p.R467H 0.28 deleterious(0.01) benign(0.234) TCGA-HU-A4G8-01 11 130319789 130319789 C T ADAMTS15 Silent p.P307P 0.29 TCGA-HU-A4G8-01 11 132184562 132184562 A G NTM Missense_Mutation p.K300R 0.24 tolerated(0.36) benign(0.018) TCGA-HU-A4G8-01 11 14317413 14317414 - A RRAS2 Intron 0.18 TCGA-HU-A4G8-01 11 14989262 14989262 G T CALCA 3'Flank 0.09 TCGA-HU-A4G8-01 11 16838609 16838609 C T PLEKHA7 Missense_Mutation p.G535D 0.23 deleterious(0) probably_damaging(1) TCGA-HU-A4G8-01 11 17332466 17332466 A G NUCB2 Missense_Mutation p.K193R 0.28 tolerated(0.18) benign(0.35) TCGA-HU-A4G8-01 11 17432160 17432160 T C ABCC8 Missense_Mutation p.H866R 0.22 deleterious(0) probably_damaging(0.971) TCGA-HU-A4G8-01 11 18253958 18253958 C T SAA4 Missense_Mutation p.A72T 0.20 deleterious(0.02) probably_damaging(0.987) TCGA-HU-A4G8-01 11 18955874 18955874 C T MRGPRX1 Missense_Mutation p.R153Q 0.30 deleterious(0.03) benign(0.005) TCGA-HU-A4G8-01 11 19197550 19197550 A G ZDHHC13 3'UTR 0.24 TCGA-HU-A4G8-01 11 20691304 20691304 G C NELL1 Missense_Mutation p.C12S 0.21 deleterious_low_confidence(0.04) benign(0.004) TCGA-HU-A4G8-01 11 2417910 2417910 T A CD81 Missense_Mutation p.I205N 0.27 deleterious(0) probably_damaging(0.983) TCGA-HU-A4G8-01 11 2426153 2426153 G A TRPM5 3'UTR 0.34 TCGA-HU-A4G8-01 11 292902 292902 G A ATHL1 Missense_Mutation p.R392Q 0.28 tolerated(0.47) benign(0.055) TCGA-HU-A4G8-01 11 30034022 30034022 G A KCNA4 Silent p.R68R 0.28 TCGA-HU-A4G8-01 11 30034268 30034269 - A KCNA4 5'UTR 0.16 TCGA-HU-A4G8-01 11 33090338 33090338 G T TCP11L1 Missense_Mutation p.K420N 0.23 tolerated(0.44) benign(0.371) TCGA-HU-A4G8-01 11 33106722 33106722 C T CSTF3 Missense_Mutation p.E689K 0.24 tolerated(0.86) benign(0.07) TCGA-HU-A4G8-01 11 33370344 33370344 C A HIPK3 Silent p.S882S 0.20 TCGA-HU-A4G8-01 11 36614223 36614223 T - RAG2 Frame_Shift_Del p.K499Sfs*4 0.25 TCGA-HU-A4G8-01 11 375712 375712 G A B4GALNT4 Silent p.P308P 0.33 TCGA-HU-A4G8-01 11 379925 379925 C T B4GALNT4 Missense_Mutation p.R850C 0.23 tolerated(0.06) unknown(0) TCGA-HU-A4G8-01 11 44219525 44219525 A G EXT2 Silent p.K517K 0.19 TCGA-HU-A4G8-01 11 44959882 44959882 G A TP53I11 Missense_Mutation p.A2V 0.41 deleterious_low_confidence(0.04) benign(0.231) TCGA-HU-A4G8-01 11 4615541 4615541 G A OR52I1 Silent p.S91S 0.26 TCGA-HU-A4G8-01 11 46900582 46900582 T C LRP4 Silent p.T1004T 0.23 TCGA-HU-A4G8-01 11 47256210 47256210 T C DDB2 Missense_Mutation p.M230T 0.34 tolerated(0.58) benign(0.003) TCGA-HU-A4G8-01 11 47435909 47435909 A T SLC39A13 Intron 0.33 TCGA-HU-A4G8-01 11 47597166 47597167 CT - KBTBD4 Frame_Shift_Del p.E241Vfs*38 0.20 TCGA-HU-A4G8-01 11 49974149 49974149 T - OR4C13 Frame_Shift_Del p.F60Sfs*20 0.20 TCGA-HU-A4G8-01 11 55065032 55065032 T - TRIM51HP RNA 0.40 TCGA-HU-A4G8-01 11 5529402 5529402 A - UBQLN3 Frame_Shift_Del p.S463Pfs*24 0.17 TCGA-HU-A4G8-01 11 55761382 55761382 C T OR5F1 Silent p.T240T 0.28 TCGA-HU-A4G8-01 11 5624931 5624931 C T TRIM6 Missense_Mutation p.T158M 0.24 deleterious(0.01) possibly_damaging(0.852) TCGA-HU-A4G8-01 11 5653606 5653607 - C TRIM34 Frame_Shift_Ins p.I17Hfs*50 0.14 TCGA-HU-A4G8-01 11 57087895 57087895 G - TNKS1BP1 Frame_Shift_Del p.P129Lfs*2 0.20 TCGA-HU-A4G8-01 11 57983027 57983027 G A OR1S1 Missense_Mutation p.V271M 0.24 deleterious(0) probably_damaging(0.919) TCGA-HU-A4G8-01 11 58207416 58207416 C T OR5B12 Missense_Mutation p.G70D 0.27 tolerated_low_confidence(0.09) benign(0.061) TCGA-HU-A4G8-01 11 5841962 5841962 C T OR52N2 Missense_Mutation p.R133C 0.28 deleterious(0.02) benign(0.028) TCGA-HU-A4G8-01 11 59603317 59603319 ACA - GIF In_Frame_Del p.V346del 0.31 TCGA-HU-A4G8-01 11 60105316 60105316 C T MS4A6E Nonsense_Mutation p.Q84* 0.28 TCGA-HU-A4G8-01 11 60701145 60701145 G A TMEM132A Silent p.P497P 0.22 TCGA-HU-A4G8-01 11 61295633 61295633 C T SYT7 Missense_Mutation p.E201K 0.20 deleterious(0.03) benign(0.352) TCGA-HU-A4G8-01 11 61584071 61584071 C A FADS1 Missense_Mutation p.G111W 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-HU-A4G8-01 11 6231118 6231118 A G C11orf42 Silent p.V37V 0.23 TCGA-HU-A4G8-01 11 6232863 6232863 A G FAM160A2 Missense_Mutation p.F945S 0.28 deleterious(0) probably_damaging(0.999) TCGA-HU-A4G8-01 11 62455497 62455497 T G LRRN4CL Missense_Mutation p.S162R 0.25 deleterious(0) probably_damaging(0.939) TCGA-HU-A4G8-01 11 62545464 62545464 C T TAF6L Silent p.Y83Y 0.27 TCGA-HU-A4G8-01 11 64323838 64323838 G A SLC22A11 Missense_Mutation p.V123I 0.34 tolerated(0.24) benign(0.028) TCGA-HU-A4G8-01 11 644595 644595 G A DEAF1 Silent p.D551D 0.22 TCGA-HU-A4G8-01 11 64537024 64537024 C - SF1 Frame_Shift_Del p.S307Lfs*2 0.14 TCGA-HU-A4G8-01 11 64572093 64572093 G - MEN1 Frame_Shift_Del p.R521Gfs*43 0.26 TCGA-HU-A4G8-01 11 64674254 64674254 C T ATG2A Missense_Mutation p.G956R 0.28 deleterious(0) probably_damaging(1) TCGA-HU-A4G8-01 11 64812884 64812884 C T NAALADL1 Silent p.P694P 0.15 TCGA-HU-A4G8-01 11 64938885 64938885 G - SPDYC Frame_Shift_Del p.G40Afs*62 0.16 TCGA-HU-A4G8-01 11 65161804 65161804 C T FRMD8 Silent p.C163C 0.18 TCGA-HU-A4G8-01 11 65409844 65409844 C T SIPA1 Missense_Mutation p.T268M 0.31 deleterious(0) probably_damaging(0.931) TCGA-HU-A4G8-01 11 65653100 65653100 G A FIBP Missense_Mutation p.R183C 0.25 deleterious(0) probably_damaging(1) TCGA-HU-A4G8-01 11 65714358 65714358 T C TSGA10IP RNA 0.30 TCGA-HU-A4G8-01 11 65715209 65715209 C T TSGA10IP RNA 0.24 TCGA-HU-A4G8-01 11 65822776 65822776 G A SF3B2 Missense_Mutation p.R163H 0.20 deleterious_low_confidence(0) probably_damaging(0.964) TCGA-HU-A4G8-01 11 66330516 66330516 C - CTSF 3'Flank 0.15 TCGA-HU-A4G8-01 11 66436260 66436260 T C RBM4B Silent p.P305P 0.23 TCGA-HU-A4G8-01 11 66633741 66633741 G A PC Missense_Mutation p.R368C 0.31 deleterious(0.03) possibly_damaging(0.513) TCGA-HU-A4G8-01 11 67222963 67222963 G A CABP4 Silent p.A23A 0.24 TCGA-HU-A4G8-01 11 67287369 67287369 G A CABP2 Missense_Mutation p.R178W 0.25 deleterious(0.01) probably_damaging(1) TCGA-HU-A4G8-01 11 68029129 68029129 G A C11orf24 Missense_Mutation p.A445V 0.31 deleterious(0) possibly_damaging(0.873) TCGA-HU-A4G8-01 11 70331881 70331881 G A SHANK2 Missense_Mutation p.T1507M 0.26 tolerated(0.06) possibly_damaging(0.791) TCGA-HU-A4G8-01 11 71276883 71276883 T C KRTAP5-10 Missense_Mutation p.C84R 0.18 unknown(0) TCGA-HU-A4G8-01 11 72385289 72385289 G A PDE2A 5'UTR 0.21 TCGA-HU-A4G8-01 11 72423290 72423290 C T ARAP1 Missense_Mutation p.V325I 0.26 tolerated(0.55) benign(0) TCGA-HU-A4G8-01 11 72425227 72425227 G A ARAP1 Missense_Mutation p.P217S 0.31 tolerated(0.2) probably_damaging(0.998) TCGA-HU-A4G8-01 11 73997331 73997331 A G P4HA3 Missense_Mutation p.I292T 0.22 tolerated(0.39) benign(0.017) TCGA-HU-A4G8-01 11 74989778 74989778 G A ARRB1 Missense_Mutation p.R165C 0.25 deleterious(0.01) probably_damaging(0.975) TCGA-HU-A4G8-01 11 76830130 76830130 C T CAPN5 Missense_Mutation p.R408W 0.14 deleterious(0) possibly_damaging(0.832) TCGA-HU-A4G8-01 11 83344258 83344258 C T DLG2 Missense_Mutation p.V646I 0.12 tolerated(0.11) probably_damaging(0.977) TCGA-HU-A4G8-01 11 88068108 88068108 A - CTSC Frame_Shift_Del p.F105Lfs*10 0.25 TCGA-HU-A4G8-01 11 89392887 89392888 - A FOLH1B RNA 0.12 TCGA-HU-A4G8-01 11 8941056 8941056 T - AKIP1 3'UTR 0.23 TCGA-HU-A4G8-01 11 9225343 9225343 G A DENND5A Silent p.C271C 0.23 TCGA-HU-A4G8-01 11 92702912 92702912 C T MTNR1B Silent p.F7F 0.31 TCGA-HU-A4G8-01 11 92703057 92703057 G A MTNR1B Missense_Mutation p.V56M 0.36 deleterious(0.02) benign(0.144) TCGA-HU-A4G8-01 11 93454921 93454921 G - KIAA1731 Intron 0.39 TCGA-HU-A4G8-01 11 94231382 94231382 A G ANKRD49 Missense_Mutation p.H135R 0.19 tolerated(0.24) benign(0.035) TCGA-HU-A4G8-01 11 94862364 94862364 G A ENDOD1 Missense_Mutation p.C375Y 0.22 tolerated(0.05) possibly_damaging(0.73) TCGA-HU-A4G8-01 11 95825410 95825410 C T MAML2 Silent p.Q595Q 0.33 TCGA-HU-A4G8-01 12 100806649 100806649 G A SLC17A8 Missense_Mutation p.A430T 0.26 deleterious(0) probably_damaging(1) TCGA-HU-A4G8-01 12 101368594 101368594 G A ANO4 Intron 0.16 TCGA-HU-A4G8-01 12 101381385 101381385 C T ANO4 Missense_Mutation p.T189I 0.28 tolerated(1) benign(0.059) TCGA-HU-A4G8-01 12 101685882 101685882 A G UTP20 Silent p.K391K 0.23 TCGA-HU-A4G8-01 12 101764871 101764871 C T UTP20 Silent p.I2241I 0.19 TCGA-HU-A4G8-01 12 102158268 102158268 G A GNPTAB Silent p.D809D 0.22 TCGA-HU-A4G8-01 12 104335305 104335305 A - HSP90B1 Frame_Shift_Del p.K405Rfs*21 0.14 TCGA-HU-A4G8-01 12 107937778 107937778 C - BTBD11 Frame_Shift_Del p.L453Cfs*53 0.20 TCGA-HU-A4G8-01 12 108090314 108090317 TGAG - PWP1 Frame_Shift_Del p.S190Wfs*4 0.12 TCGA-HU-A4G8-01 12 109694009 109694009 C A ACACB Silent p.P2077P 0.30 TCGA-HU-A4G8-01 12 10978282 10978282 A - TAS2R10 Frame_Shift_Del p.L196* 0.22 TCGA-HU-A4G8-01 12 109972426 109972426 C T UBE3B Missense_Mutation p.R1016W 0.31 deleterious(0) probably_damaging(0.988) TCGA-HU-A4G8-01 12 110019240 110019240 C - MVK Frame_Shift_Del p.A141Rfs*18 0.19 TCGA-HU-A4G8-01 12 110581305 110581305 A G IFT81 Silent p.S300S 0.30 TCGA-HU-A4G8-01 12 11091669 11091669 C A TAS2R14 Silent p.R46R 0.17 TCGA-HU-A4G8-01 12 112229169 112229169 C T ALDH2 Silent p.A247A 0.16 TCGA-HU-A4G8-01 12 112681278 112681278 G A HECTD4 Missense_Mutation p.R1467W 0.27 probably_damaging(0.98) TCGA-HU-A4G8-01 12 113542071 113542071 G A RASAL1 Silent p.R622R 0.42 TCGA-HU-A4G8-01 12 114793463 114793463 C T TBX5 Silent p.Q477Q 0.20 TCGA-HU-A4G8-01 12 116408550 116408550 A - MED13L Frame_Shift_Del p.F1972Lfs*7 0.22 TCGA-HU-A4G8-01 12 117593747 117593747 G A FBXO21 Silent p.G515G 0.20 TCGA-HU-A4G8-01 12 1192553 1192553 A - ERC1 Frame_Shift_Del p.K299Sfs*4 0.19 TCGA-HU-A4G8-01 12 120576551 120576551 G T GCN1L1 Missense_Mutation p.T2035N 0.24 probably_damaging(0.919) TCGA-HU-A4G8-01 12 120591163 120591163 C T GCN1L1 Missense_Mutation p.A1306T 0.23 probably_damaging(0.935) TCGA-HU-A4G8-01 12 120638618 120638618 G A RPLP0 5'UTR 0.22 TCGA-HU-A4G8-01 12 121970820 121970820 G A KDM2B Silent p.Y274Y 0.21 TCGA-HU-A4G8-01 12 12334328 12334328 C T LRP6 Missense_Mutation p.R341H 0.23 deleterious(0) benign(0.046) TCGA-HU-A4G8-01 12 124094656 124094656 G T DDX55 Missense_Mutation p.R241L 0.30 tolerated(0.26) benign(0.04) TCGA-HU-A4G8-01 12 124218472 124218472 G - ATP6V0A2 Splice_Site p.X218_splice 0.18 TCGA-HU-A4G8-01 12 124325980 124325980 C T DNAH10 Missense_Mutation p.R1632W 0.25 possibly_damaging(0.849) TCGA-HU-A4G8-01 12 124911328 124911328 G A NCOR2 Missense_Mutation p.R390C 0.28 unknown(0) TCGA-HU-A4G8-01 12 130648101 130648101 C T FZD10 Missense_Mutation p.A205V 0.23 tolerated(0.25) benign(0.098) TCGA-HU-A4G8-01 12 132334499 132334499 C T MMP17 Missense_Mutation p.R453C 0.20 deleterious(0.05) benign(0.329) TCGA-HU-A4G8-01 12 132445666 132445666 G T EP400 Missense_Mutation p.G168W 0.23 unknown(0) TCGA-HU-A4G8-01 12 133281219 133281219 C T PXMP2 Silent p.F178F 0.26 TCGA-HU-A4G8-01 12 133419637 133419637 C T CHFR Missense_Mutation p.G638S 0.27 deleterious(0) probably_damaging(1) TCGA-HU-A4G8-01 12 13720103 13720103 C A GRIN2B Missense_Mutation p.M818I 0.30 deleterious(0) probably_damaging(0.983) TCGA-HU-A4G8-01 12 14613959 14613960 CT - ATF7IP Frame_Shift_Del p.Y898* 0.19 TCGA-HU-A4G8-01 12 14832594 14832594 A - GUCY2C Frame_Shift_Del p.F276Sfs*16 0.24 TCGA-HU-A4G8-01 12 14840939 14840939 T - GUCY2C Frame_Shift_Del p.G93Afs*28 0.23 TCGA-HU-A4G8-01 12 15811510 15811510 A - EPS8 Frame_Shift_Del p.L316* 0.21 TCGA-HU-A4G8-01 12 25047327 25047327 G A BCAT1 Missense_Mutation p.T66M 0.20 deleterious(0.02) probably_damaging(0.986) TCGA-HU-A4G8-01 12 275010 275010 G T IQSEC3 Missense_Mutation p.K975N 0.11 deleterious(0) probably_damaging(0.95) TCGA-HU-A4G8-01 12 29659903 29659903 G A TMTC1 Missense_Mutation p.A842V 0.24 deleterious(0) probably_damaging(0.987) TCGA-HU-A4G8-01 12 30802093 30802093 C T IPO8 Missense_Mutation p.C749Y 0.24 tolerated(0.12) benign(0.414) TCGA-HU-A4G8-01 12 3149691 3149691 C T TEAD4 3'UTR 0.20 TCGA-HU-A4G8-01 12 32133955 32133955 T - KIAA1551 Frame_Shift_Del p.L24Cfs*5 0.20 TCGA-HU-A4G8-01 12 32832281 32832281 C T DNM1L 5'UTR 0.30 TCGA-HU-A4G8-01 12 33592379 33592379 C T SYT10 Missense_Mutation p.G27S 0.21 deleterious(0.05) possibly_damaging(0.627) TCGA-HU-A4G8-01 12 3649780 3649780 C - PRMT8 Frame_Shift_Del p.S31Pfs*35 0.25 TCGA-HU-A4G8-01 12 4461843 4461843 A G C12orf5 Missense_Mutation p.T267A 0.18 tolerated(0.16) benign(0.006) TCGA-HU-A4G8-01 12 49162363 49162363 G A ADCY6 3'UTR 0.18 TCGA-HU-A4G8-01 12 4920562 4920562 T C KCNA6 Missense_Mutation p.L452P 0.21 deleterious(0) probably_damaging(1) TCGA-HU-A4G8-01 12 49425085 49425085 C T KMT2D Missense_Mutation p.R4468Q 0.21 unknown(0) TCGA-HU-A4G8-01 12 49436954 49436954 C - KMT2D Frame_Shift_Del p.G1850Afs*2 0.15 TCGA-HU-A4G8-01 12 51502902 51502902 A G TFCP2 Splice_Site p.X239_splice 0.36 TCGA-HU-A4G8-01 12 51723491 51723491 C T CELA1 Missense_Mutation p.A246T 0.28 deleterious(0.01) possibly_damaging(0.559) TCGA-HU-A4G8-01 12 52174462 52174462 C T SCN8A Silent p.A1283A 0.32 TCGA-HU-A4G8-01 12 52451148 52451148 C T NR4A1 Silent p.G471G 0.27 TCGA-HU-A4G8-01 12 52967361 52967361 G A KRT74 Silent p.G67G 0.26 TCGA-HU-A4G8-01 12 52981502 52981502 C T KRT72 Missense_Mutation p.R408H 0.26 deleterious(0.02) probably_damaging(0.976) TCGA-HU-A4G8-01 12 53207880 53207880 A G KRT4 5'UTR 0.35 TCGA-HU-A4G8-01 12 53579255 53579255 A - ZNF740 Frame_Shift_Del p.K83Rfs*4 0.13 TCGA-HU-A4G8-01 12 53587625 53587625 G T ITGB7 Missense_Mutation p.L457I 0.26 tolerated(1) benign(0.06) TCGA-HU-A4G8-01 12 53722416 53722416 G A SP7 Silent p.C270C 0.55 TCGA-HU-A4G8-01 12 53776184 53776184 C T SP1 Silent p.A151A 0.27 TCGA-HU-A4G8-01 12 54799076 54799076 C T ITGA5 Missense_Mutation p.V367I 0.27 tolerated(0.2) benign(0.007) TCGA-HU-A4G8-01 12 54893239 54893239 G A NCKAP1L Missense_Mutation p.R68Q 0.32 deleterious(0.01) possibly_damaging(0.646) TCGA-HU-A4G8-01 12 54920358 54920358 G A NCKAP1L Missense_Mutation p.V735I 0.33 deleterious(0.01) benign(0.02) TCGA-HU-A4G8-01 12 56081805 56081805 C T ITGA7 Missense_Mutation p.V1049I 0.26 tolerated(0.76) benign(0.028) TCGA-HU-A4G8-01 12 56092271 56092271 C - ITGA7 Frame_Shift_Del p.G367Vfs*143 0.24 TCGA-HU-A4G8-01 12 56092588 56092588 C T ITGA7 Missense_Mutation p.A306T 0.30 tolerated(0.29) possibly_damaging(0.701) TCGA-HU-A4G8-01 12 56230755 56230755 A G MMP19 3'UTR 0.23 TCGA-HU-A4G8-01 12 56348059 56348059 C T PMEL Missense_Mutation p.R649H 0.23 tolerated(0.09) benign(0.005) TCGA-HU-A4G8-01 12 56510435 56510435 T - RPL41 5'UTR 0.14 TCGA-HU-A4G8-01 12 56531349 56531349 C T ESYT1 Silent p.L679L 0.28 TCGA-HU-A4G8-01 12 56600349 56600349 C T RNF41 Missense_Mutation p.R279H 0.17 tolerated(0.12) possibly_damaging(0.456) TCGA-HU-A4G8-01 12 56704996 56704996 G A CNPY2 Missense_Mutation p.A136V 0.26 deleterious(0.05) possibly_damaging(0.886) TCGA-HU-A4G8-01 12 57036479 57036479 C T ATP5B Missense_Mutation p.R310H 0.18 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-HU-A4G8-01 12 57640669 57640669 T C STAC3 Missense_Mutation p.N174S 0.28 tolerated(0.84) benign(0.003) TCGA-HU-A4G8-01 12 57864218 57864218 C - GLI1 Frame_Shift_Del p.P567Lfs*46 0.22 TCGA-HU-A4G8-01 12 59274454 59274454 C A LRIG3 Missense_Mutation p.E570D 0.23 tolerated(0.1) benign(0.004) TCGA-HU-A4G8-01 12 62148720 62148723 TGTT - FAM19A2 Frame_Shift_Del p.T64Sfs*25 0.31 TCGA-HU-A4G8-01 12 62946683 62946683 T C MON2 Missense_Mutation p.F980S 0.41 tolerated(0.34) benign(0.009) TCGA-HU-A4G8-01 12 63954355 63954355 G A DPY19L2 Silent p.D738D 0.19 TCGA-HU-A4G8-01 12 65085254 65085254 C T RASSF3 Silent p.Y154Y 0.20 TCGA-HU-A4G8-01 12 66696538 66696538 T G HELB Missense_Mutation p.V52G 0.19 deleterious(0.01) possibly_damaging(0.548) TCGA-HU-A4G8-01 12 6688047 6688047 G A CHD4 Missense_Mutation p.A1649V 0.24 tolerated(0.25) benign(0) TCGA-HU-A4G8-01 12 6777196 6777196 A G ZNF384 Missense_Mutation p.V473A 0.32 tolerated(0.65) benign(0.153) TCGA-HU-A4G8-01 12 69044223 69044223 C A RAP1B Missense_Mutation p.P34H 0.12 deleterious(0) probably_damaging(0.997) TCGA-HU-A4G8-01 12 6973052 6973052 C T USP5 Silent p.D671D 0.26 TCGA-HU-A4G8-01 12 69968607 69968607 C T FRS2 Missense_Mutation p.R467C 0.26 deleterious(0.02) probably_damaging(0.999) TCGA-HU-A4G8-01 12 70070713 70070715 AGA - BEST3 In_Frame_Del p.F283del 0.13 TCGA-HU-A4G8-01 12 7805361 7805361 G A APOBEC1 Missense_Mutation p.L39F 0.17 tolerated(0.06) probably_damaging(0.999) TCGA-HU-A4G8-01 12 7945649 7945649 A - NANOG Frame_Shift_Del p.K87Rfs*46 0.14 TCGA-HU-A4G8-01 12 8281890 8281890 A - CLEC4A Frame_Shift_Del p.K79Rfs*14 0.20 TCGA-HU-A4G8-01 12 83444731 83444732 - A TMTC2 Frame_Shift_Ins p.A737Sfs*3 0.22 TCGA-HU-A4G8-01 12 88453675 88453675 T - CEP290 Frame_Shift_Del p.E2216Kfs*10 0.22 TCGA-HU-A4G8-01 12 88912498 88912498 C T KITLG Silent p.E113E 0.20 TCGA-HU-A4G8-01 12 9096397 9096397 C T M6PR Silent p.A151A 0.20 TCGA-HU-A4G8-01 12 9393050 9393050 C T LINC00987 RNA 0.25 TCGA-HU-A4G8-01 12 96394809 96394809 G A LTA4H Silent p.P598P 0.28 TCGA-HU-A4G8-01 12 96640852 96640852 G A ELK3 Silent p.A114A 0.22 TCGA-HU-A4G8-01 13 100617618 100617618 T A ZIC5 3'UTR 0.25 TCGA-HU-A4G8-01 13 103419621 103419621 A G TEX30 Splice_Site p.X168_splice 0.23 TCGA-HU-A4G8-01 13 110814758 110814758 G A COL4A1 Silent p.P1427P 0.24 TCGA-HU-A4G8-01 13 111155630 111155630 G A COL4A2 Splice_Site p.X1347_splice 0.21 TCGA-HU-A4G8-01 13 113803660 113803660 C T F10 Silent p.F432F 0.25 TCGA-HU-A4G8-01 13 114150047 114150047 C T TMCO3 Missense_Mutation p.R51W 0.22 deleterious(0.04) benign(0.39) TCGA-HU-A4G8-01 13 114542743 114542745 AGA - GAS6 In_Frame_Del p.F141del 0.46 TCGA-HU-A4G8-01 13 20216317 20216317 C T MPHOSPH8 Silent p.P92P 0.33 TCGA-HU-A4G8-01 13 23929463 23929463 C A SACS Missense_Mutation p.D430Y 0.19 benign(0.281) TCGA-HU-A4G8-01 13 25744119 25744119 G - AMER2 Frame_Shift_Del p.R547Gfs*38 0.26 TCGA-HU-A4G8-01 13 25745711 25745711 C A AMER2 Missense_Mutation p.R16L 0.44 deleterious_low_confidence(0) unknown(0) TCGA-HU-A4G8-01 13 26133873 26133873 T C ATP8A2 Missense_Mutation p.L456S 0.15 tolerated(0.82) benign(0.045) TCGA-HU-A4G8-01 13 28197233 28197233 G A POLR1D Missense_Mutation p.R83H 0.36 deleterious(0.02) benign(0.355) TCGA-HU-A4G8-01 13 28834652 28834652 C T PAN3 Silent p.N439N 0.38 TCGA-HU-A4G8-01 13 29275609 29275609 T - SLC46A3 Intron 0.38 TCGA-HU-A4G8-01 13 31232943 31232943 C T USPL1 Missense_Mutation p.P910L 0.31 deleterious(0.04) benign(0.187) TCGA-HU-A4G8-01 13 32653072 32653072 C A FRY Missense_Mutation p.P58T 0.36 tolerated(0.28) benign(0.168) TCGA-HU-A4G8-01 13 32907096 32907096 T C BRCA2 Missense_Mutation p.V494A 0.33 tolerated(0.21) benign(0.073) TCGA-HU-A4G8-01 13 33590920 33590920 G A KL Silent p.P114P 0.41 TCGA-HU-A4G8-01 13 35733237 35733237 A T NBEA Nonsense_Mutation p.K977* 0.40 TCGA-HU-A4G8-01 13 35734077 35734077 G A NBEA Missense_Mutation p.A1257T 0.14 tolerated_low_confidence(0.37) benign(0.002) TCGA-HU-A4G8-01 13 36445442 36445442 T - DCLK1 Frame_Shift_Del p.I287* 0.18 TCGA-HU-A4G8-01 13 36686023 36686023 T C DCLK1 Missense_Mutation p.T236A 0.19 tolerated(0.08) unknown(0) TCGA-HU-A4G8-01 13 36788722 36788722 C T SOHLH2 Intron 0.67 TCGA-HU-A4G8-01 13 37401883 37401883 C A RFXAP Nonsense_Mutation p.S271* 0.15 TCGA-HU-A4G8-01 13 39357245 39357247 GAA - FREM2 In_Frame_Del p.E1895del 0.42 TCGA-HU-A4G8-01 13 40293455 40293455 A G COG6 Missense_Mutation p.H456R 0.37 deleterious(0.04) benign(0.015) TCGA-HU-A4G8-01 13 42303690 42303690 G A VWA8 Missense_Mutation p.R876C 0.36 deleterious(0) probably_damaging(0.993) TCGA-HU-A4G8-01 13 45149755 45149755 C T TSC22D1 Silent p.S152S 0.22 TCGA-HU-A4G8-01 13 45915235 45915235 C G TPT1 5'UTR 0.15 TCGA-HU-A4G8-01 13 46632459 46632459 G A CPB2 Missense_Mutation p.S285L 0.27 deleterious(0) probably_damaging(0.998) TCGA-HU-A4G8-01 13 48986150 48986153 CAAA - LPAR6 Frame_Shift_Del p.V136Afs*6 0.16 TCGA-HU-A4G8-01 13 52971460 52971460 T C THSD1 Missense_Mutation p.M310V 0.17 tolerated(1) benign(0.001) TCGA-HU-A4G8-01 13 61102848 61102848 A - TDRD3 Frame_Shift_Del p.R499Efs*28 0.31 TCGA-HU-A4G8-01 13 61987885 61987885 G - PCDH20 Frame_Shift_Del p.P116Lfs*11 0.14 TCGA-HU-A4G8-01 13 73357634 73357634 A - PIBF1 Frame_Shift_Del p.V12* 0.19 TCGA-HU-A4G8-01 13 77636771 77636771 G A MYCBP2 Missense_Mutation p.S4207L 0.16 probably_damaging(0.96) TCGA-HU-A4G8-01 13 86368498 86368498 G A SLITRK6 Missense_Mutation p.H716Y 0.21 tolerated(1) benign(0.006) TCGA-HU-A4G8-01 13 88328422 88328422 G T SLITRK5 Missense_Mutation p.G260V 0.36 deleterious(0) probably_damaging(1) TCGA-HU-A4G8-01 13 88330043 88330043 G A SLITRK5 Silent p.P800P 0.34 TCGA-HU-A4G8-01 13 95131311 95131311 C T DCT Missense_Mutation p.D67N 0.36 deleterious(0.01) probably_damaging(1) TCGA-HU-A4G8-01 13 95229643 95229643 A G TGDS Missense_Mutation p.V289A 0.17 deleterious(0) benign(0.08) TCGA-HU-A4G8-01 13 96229572 96229572 T C CLDN10 Silent p.S184S 0.23 TCGA-HU-A4G8-01 14 101498390 101498390 T - MIR543 RNA 0.24 TCGA-HU-A4G8-01 14 102910040 102910040 C T TECPR2 Silent p.L937L 0.24 TCGA-HU-A4G8-01 14 103413017 103413017 G A CDC42BPB Missense_Mutation p.T1179M 0.38 deleterious(0.02) probably_damaging(0.953) TCGA-HU-A4G8-01 14 104552117 104552117 G A ASPG Missense_Mutation p.A4T 0.36 deleterious(0.01) possibly_damaging(0.827) TCGA-HU-A4G8-01 14 105174185 105174185 C - INF2 Frame_Shift_Del p.V530Wfs*28 0.28 TCGA-HU-A4G8-01 14 105622325 105622325 C A JAG2 Missense_Mutation p.E159D 0.36 tolerated(0.41) benign(0.289) TCGA-HU-A4G8-01 14 106174220 106174220 G A IGHA1 Missense_Mutation p.P190L 0.19 deleterious(0.02) probably_damaging(0.995) TCGA-HU-A4G8-01 14 20404206 20404206 T C OR4K1 Silent p.C127C 0.10 TCGA-HU-A4G8-01 14 22409729 22409729 T C TRAV9-2 Silent p.D73D 0.19 TCGA-HU-A4G8-01 14 23346575 23346575 C T LRP10 Missense_Mutation p.R661C 0.26 tolerated(0.11) possibly_damaging(0.609) TCGA-HU-A4G8-01 14 23745099 23745099 G A HOMEZ Silent p.N446N 0.41 TCGA-HU-A4G8-01 14 23876366 23876366 G A MYH6 Missense_Mutation p.R23C 0.21 deleterious(0) probably_damaging(0.94) TCGA-HU-A4G8-01 14 24035961 24035961 C T AP1G2 Intron 0.24 TCGA-HU-A4G8-01 14 24657835 24657835 G T IPO4 Missense_Mutation p.Q27K 0.20 deleterious(0.03) probably_damaging(0.95) TCGA-HU-A4G8-01 14 24897543 24897543 G C CBLN3 Silent p.V123V 0.29 TCGA-HU-A4G8-01 14 31570424 31570424 G C HECTD1 Missense_Mutation p.L2553V 0.26 deleterious(0) probably_damaging(0.982) TCGA-HU-A4G8-01 14 32561326 32561326 A - ARHGAP5 Frame_Shift_Del p.A486Pfs*19 0.25 TCGA-HU-A4G8-01 14 32562544 32562545 - T ARHGAP5 Frame_Shift_Ins p.E893* 0.14 TCGA-HU-A4G8-01 14 38724676 38724676 G A CLEC14A Silent p.P184P 0.21 TCGA-HU-A4G8-01 14 39648395 39648395 G A PNN Missense_Mutation p.R200H 0.27 deleterious(0.02) benign(0.335) TCGA-HU-A4G8-01 14 45711961 45711961 T C MIS18BP1 Intron 0.13 TCGA-HU-A4G8-01 14 51224353 51224353 G A NIN Missense_Mutation p.T1132M 0.24 tolerated(0.34) benign(0.002) TCGA-HU-A4G8-01 14 51243811 51243811 A G NIN Silent p.S174S 0.23 TCGA-HU-A4G8-01 14 51446192 51446192 A - TRIM9 Frame_Shift_Del p.F661Lfs*10 0.21 TCGA-HU-A4G8-01 14 53619422 53619422 C - DDHD1 Frame_Shift_Del p.G132Afs*28 0.26 TCGA-HU-A4G8-01 14 57052612 57052612 T - TMEM260 Frame_Shift_Del p.F111Sfs*25 0.20 TCGA-HU-A4G8-01 14 57960259 57960259 C A C14orf105 Missense_Mutation p.G59W 0.33 tolerated(0.09) benign(0.347) TCGA-HU-A4G8-01 14 60194028 60194028 G A RTN1 Silent p.R458R 0.42 TCGA-HU-A4G8-01 14 60194327 60194327 C T RTN1 Missense_Mutation p.A359T 0.32 deleterious(0) possibly_damaging(0.747) TCGA-HU-A4G8-01 14 60749953 60749953 G A PPM1A Missense_Mutation p.A251T 0.24 deleterious(0) probably_damaging(1) TCGA-HU-A4G8-01 14 61857990 61857990 C T PRKCH Silent p.T137T 0.21 TCGA-HU-A4G8-01 14 63511835 63511835 T A KCNH5 Missense_Mutation p.S24C 0.14 deleterious(0.04) benign(0.002) TCGA-HU-A4G8-01 14 68028745 68028745 G A PLEKHH1 Silent p.A166A 0.22 TCGA-HU-A4G8-01 14 69347589 69347589 C T ACTN1 Missense_Mutation p.D691N 0.31 tolerated(0.51) benign(0.018) TCGA-HU-A4G8-01 14 69358908 69358908 G A ACTN1 Silent p.F316F 0.24 TCGA-HU-A4G8-01 14 69521943 69521943 C A DCAF5 Missense_Mutation p.R487L 0.31 deleterious_low_confidence(0) benign(0.097) TCGA-HU-A4G8-01 14 73198564 73198564 A G DPF3 Missense_Mutation p.V127A 0.24 tolerated(0.2) benign(0.098) TCGA-HU-A4G8-01 14 73491282 73491282 C T ZFYVE1 5'UTR 0.26 TCGA-HU-A4G8-01 14 73743385 73743385 C T NUMB Silent p.Q619Q 0.24 TCGA-HU-A4G8-01 14 73743644 73743645 TG - NUMB Frame_Shift_Del p.Q533Dfs*44 0.12 TCGA-HU-A4G8-01 14 74205773 74205773 G - ELMSAN1 Frame_Shift_Del p.N314Tfs*4 0.62 TCGA-HU-A4G8-01 14 74824357 74824357 G A VRTN Missense_Mutation p.V291I 0.31 tolerated(1) benign(0.025) TCGA-HU-A4G8-01 14 74951266 74951266 G A NPC2 Missense_Mutation p.A72V 0.25 deleterious(0) possibly_damaging(0.577) TCGA-HU-A4G8-01 14 75330060 75330060 C T PROX2 Missense_Mutation p.A160T 0.24 tolerated(0.13) benign(0.136) TCGA-HU-A4G8-01 14 81366294 81366294 G T CEP128 Missense_Mutation p.S187Y 0.23 tolerated(0.18) possibly_damaging(0.495) TCGA-HU-A4G8-01 14 89069403 89069403 C T ZC3H14 Silent p.N582N 0.16 TCGA-HU-A4G8-01 14 90744541 90744541 G A NRDE2 3'UTR 0.33 TCGA-HU-A4G8-01 14 91369281 91369281 T - RPS6KA5 Frame_Shift_Del p.V331Cfs*13 0.18 TCGA-HU-A4G8-01 14 91700911 91700913 CCT - GPR68 In_Frame_Del p.E161del 0.26 TCGA-HU-A4G8-01 14 92460225 92460225 T C TRIP11 Silent p.E1696E 0.22 TCGA-HU-A4G8-01 14 93170617 93170617 A G LGMN 3'UTR 0.18 TCGA-HU-A4G8-01 14 93813698 93813698 C T COX8C Silent p.F28F 0.35 TCGA-HU-A4G8-01 14 94750338 94750338 C G SERPINA10 Silent p.L433L 0.13 TCGA-HU-A4G8-01 14 95669173 95669173 A G CLMN Splice_Site p.X837_splice 0.25 TCGA-HU-A4G8-01 15 101436086 101436086 C T ALDH1A3 Intron 0.32 TCGA-HU-A4G8-01 15 20645818 20645818 C T HERC2P3 RNA 0.13 TCGA-HU-A4G8-01 15 22855087 22855087 C T TUBGCP5 Silent p.S516S 0.16 TCGA-HU-A4G8-01 15 22926026 22926026 C T CYFIP1 Silent p.I56I 0.24 TCGA-HU-A4G8-01 15 23890894 23890894 G - MAGEL2 Frame_Shift_Del p.Q63Sfs*36 0.35 TCGA-HU-A4G8-01 15 25344676 25344676 C T SNORD116-26 RNA 0.21 TCGA-HU-A4G8-01 15 25464000 25464000 G T SNORD115-28 5'Flank 0.37 TCGA-HU-A4G8-01 15 28447515 28447515 G A HERC2 Silent p.S2486S 0.13 TCGA-HU-A4G8-01 15 31819430 31819430 G A OTUD7A Missense_Mutation p.A245V 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-HU-A4G8-01 15 34395204 34395204 T - PGBD4 Frame_Shift_Del p.F159Lfs*3 0.20 TCGA-HU-A4G8-01 15 34628900 34628900 A - SLC12A6 5'UTR 0.24 TCGA-HU-A4G8-01 15 35202392 35202392 C T AQR Missense_Mutation p.R536H 0.24 deleterious(0.01) possibly_damaging(0.764) TCGA-HU-A4G8-01 15 37100597 37100597 C T C15orf41 Silent p.I263I 0.34 TCGA-HU-A4G8-01 15 39874929 39874929 G - THBS1 Frame_Shift_Del p.G203Afs*13 0.22 TCGA-HU-A4G8-01 15 40751845 40751845 G A BAHD1 Silent p.S394S 0.16 TCGA-HU-A4G8-01 15 40756081 40756081 C T BAHD1 Nonsense_Mutation p.R613* 0.18 TCGA-HU-A4G8-01 15 41192112 41192112 C T VPS18 Silent p.L366L 0.31 TCGA-HU-A4G8-01 15 42680050 42680050 T A CAPN3 Missense_Mutation p.F200I 0.27 deleterious(0) probably_damaging(1) TCGA-HU-A4G8-01 15 42839648 42839648 C T LRRC57 Silent p.P101P 0.24 TCGA-HU-A4G8-01 15 43252855 43252855 T - UBR1 Frame_Shift_Del p.N1582Tfs*13 0.13 TCGA-HU-A4G8-01 15 43495432 43495432 G A EPB42 Nonsense_Mutation p.R584* 0.38 TCGA-HU-A4G8-01 15 43712857 43712857 G T TP53BP1 Missense_Mutation p.R1443S 0.19 deleterious(0) probably_damaging(1) TCGA-HU-A4G8-01 15 43748661 43748661 T - TP53BP1 Frame_Shift_Del p.E716Nfs*12 0.24 TCGA-HU-A4G8-01 15 43819227 43819227 C - MAP1A Frame_Shift_Del p.P1854Lfs*121 0.13 TCGA-HU-A4G8-01 15 45387776 45387776 C T DUOX2 Silent p.P1366P 0.23 TCGA-HU-A4G8-01 15 45408793 45408793 G A DUOXA2 Silent p.A140A 0.27 TCGA-HU-A4G8-01 15 48541850 48541850 A G SLC12A1 Missense_Mutation p.H588R 0.20 deleterious(0) probably_damaging(0.999) TCGA-HU-A4G8-01 15 49426681 49426682 - T COPS2 Frame_Shift_Ins p.G198Rfs*21 0.16 TCGA-HU-A4G8-01 15 51504687 51504687 G A CYP19A1 Missense_Mutation p.R365W 0.27 deleterious(0) probably_damaging(1) TCGA-HU-A4G8-01 15 51696626 51696626 G A GLDN Missense_Mutation p.G444D 0.39 tolerated(0.32) probably_damaging(0.998) TCGA-HU-A4G8-01 15 52414903 52414903 T C GNB5 3'UTR 0.21 TCGA-HU-A4G8-01 15 52844160 52844160 A G ARPP19 Missense_Mutation p.S104P 0.18 deleterious(0.03) benign(0.33) TCGA-HU-A4G8-01 15 53957791 53957791 A G WDR72 Missense_Mutation p.L647P 0.09 tolerated(0.05) benign(0.009) TCGA-HU-A4G8-01 15 56968897 56968897 G A ZNF280D Missense_Mutation p.P461S 0.23 deleterious(0) benign(0.076) TCGA-HU-A4G8-01 15 60298040 60298040 C A FOXB1 Missense_Mutation p.P293H 0.18 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-HU-A4G8-01 15 65946326 65946326 T C SLC24A1 Missense_Mutation p.L1070P 0.23 probably_damaging(0.999) TCGA-HU-A4G8-01 15 66612978 66612978 C T DIS3L Missense_Mutation p.R412C 0.37 deleterious(0.01) benign(0.046) TCGA-HU-A4G8-01 15 69728919 69728919 C T KIF23 Silent p.D471D 0.21 TCGA-HU-A4G8-01 15 71300948 71300948 A C LRRC49 Missense_Mutation p.N472T 0.31 deleterious(0) probably_damaging(0.954) TCGA-HU-A4G8-01 15 74290466 74290466 C T PML Missense_Mutation p.S84L 0.28 tolerated(0.08) benign(0.075) TCGA-HU-A4G8-01 15 74425630 74425631 TA - ISLR2 Frame_Shift_Del p.Y179Sfs*65 0.22 TCGA-HU-A4G8-01 15 74427108 74427108 C T ISLR2 Silent p.D671D 0.25 TCGA-HU-A4G8-01 15 74912508 74912508 G A CLK3 Missense_Mutation p.R252H 0.24 tolerated(0.07) possibly_damaging(0.556) TCGA-HU-A4G8-01 15 75320640 75320640 T C PPCDC 5'UTR 0.32 TCGA-HU-A4G8-01 15 75498393 75498393 G A C15orf39 Missense_Mutation p.A2T 0.24 tolerated(0.07) possibly_damaging(0.682) TCGA-HU-A4G8-01 15 75501053 75501053 C T C15orf39 Silent p.A888A 0.24 TCGA-HU-A4G8-01 15 75704021 75704021 A - SIN3A Frame_Shift_Del p.S274Pfs*13 0.10 TCGA-HU-A4G8-01 15 75974714 75974714 G A CSPG4 Missense_Mutation p.R1624W 0.19 deleterious(0) possibly_damaging(0.677) TCGA-HU-A4G8-01 15 78894268 78894268 C T CHRNA3 Missense_Mutation p.R239H 0.38 deleterious(0) probably_damaging(1) TCGA-HU-A4G8-01 15 79290463 79290463 G A RASGRF1 Missense_Mutation p.R997W 0.15 deleterious(0.01) probably_damaging(0.921) TCGA-HU-A4G8-01 15 79339295 79339295 G A RASGRF1 Missense_Mutation p.T224I 0.19 tolerated(0.57) benign(0.014) TCGA-HU-A4G8-01 15 80181594 80181594 G A ST20-MTHFS Nonsense_Mutation p.R50* 0.15 TCGA-HU-A4G8-01 15 81173394 81173394 T - KIAA1199 Frame_Shift_Del p.F180Lfs*44 0.21 TCGA-HU-A4G8-01 15 81625552 81625552 C T TMC3 Silent p.S837S 0.19 TCGA-HU-A4G8-01 15 85147393 85147393 C T ZSCAN2 Missense_Mutation p.R79C 0.33 deleterious(0) possibly_damaging(0.664) TCGA-HU-A4G8-01 15 85149926 85149926 G A ZSCAN2 Intron 0.47 TCGA-HU-A4G8-01 15 85400502 85400502 G - ALPK3 Frame_Shift_Del p.G1048Efs*12 0.10 TCGA-HU-A4G8-01 15 89074383 89074383 C T DET1 Missense_Mutation p.R196Q 0.15 tolerated(0.2) benign(0.284) TCGA-HU-A4G8-01 15 91422181 91422181 G A FURIN Missense_Mutation p.S343N 0.20 deleterious(0) probably_damaging(0.931) TCGA-HU-A4G8-01 15 91453427 91453429 CTC - MAN2A2 In_Frame_Del p.S495del 0.17 TCGA-HU-A4G8-01 15 91801724 91801724 C A SV2B Silent p.P286P 0.19 TCGA-HU-A4G8-01 15 93567925 93567925 G A CHD2 Missense_Mutation p.R1826Q 0.12 deleterious_low_confidence(0) possibly_damaging(0.885) TCGA-HU-A4G8-01 15 99740199 99740199 T C TTC23 Silent p.V228V 0.23 TCGA-HU-A4G8-01 16 10524868 10524868 A G ATF7IP2 Missense_Mutation p.T131A 0.18 tolerated(0.1) benign(0.073) TCGA-HU-A4G8-01 16 1478472 1478472 C T C16orf91 Missense_Mutation p.R60Q 0.41 tolerated_low_confidence(0.27) benign(0.001) TCGA-HU-A4G8-01 16 15831456 15831456 T G MYH11 Missense_Mutation p.K1055T 0.35 probably_damaging(0.997) TCGA-HU-A4G8-01 16 1604942 1604942 C - TMEM204 Frame_Shift_Del p.R201Gfs*2 0.24 TCGA-HU-A4G8-01 16 1828472 1828472 G A SPSB3 Missense_Mutation p.R90W 0.19 deleterious(0.02) possibly_damaging(0.677) TCGA-HU-A4G8-01 16 1842221 1842221 C T IGFALS Silent p.T104T 0.27 TCGA-HU-A4G8-01 16 18584352 18584352 C T RP11-457I16.2 5'Flank 0.35 TCGA-HU-A4G8-01 16 19873222 19873222 G A GPRC5B Silent p.S368S 0.25 TCGA-HU-A4G8-01 16 20352437 20352438 - G UMOD Frame_Shift_Ins p.L518Pfs*14 0.23 TCGA-HU-A4G8-01 16 2110801 2110801 T G TSC2 Missense_Mutation p.L369R 0.24 deleterious(0) probably_damaging(0.99) TCGA-HU-A4G8-01 16 23080765 23080765 C T USP31 Silent p.S887S 0.51 TCGA-HU-A4G8-01 16 23641345 23641345 C T PALB2 Silent p.T710T 0.19 TCGA-HU-A4G8-01 16 24971014 24971014 G A ARHGAP17 Silent p.L234L 0.17 TCGA-HU-A4G8-01 16 2546177 2546177 G A RP11-20I23.1 Missense_Mutation p.V10M 0.27 deleterious(0.01) possibly_damaging(0.905) TCGA-HU-A4G8-01 16 2732506 2732506 G A KCTD5 5'UTR 0.15 TCGA-HU-A4G8-01 16 27540017 27540017 C T GTF3C1 Missense_Mutation p.R292H 0.23 deleterious(0) probably_damaging(0.999) TCGA-HU-A4G8-01 16 27789260 27789260 G A KIAA0556 Missense_Mutation p.A1591T 0.34 tolerated(0.18) benign(0.016) TCGA-HU-A4G8-01 16 29821441 29821441 G A MAZ 3'UTR 0.41 TCGA-HU-A4G8-01 16 29825012 29825012 G - PRRT2 Frame_Shift_Del p.A214Pfs*15 0.14 TCGA-HU-A4G8-01 16 29994071 29994071 G A TAOK2 Missense_Mutation p.R283Q 0.22 deleterious(0.03) benign(0.032) TCGA-HU-A4G8-01 16 3021803 3021803 G A PAQR4 Missense_Mutation p.E226K 0.13 deleterious(0) probably_damaging(1) TCGA-HU-A4G8-01 16 30409298 30409299 - G ZNF48 Frame_Shift_Ins p.E245Gfs*35 0.26 TCGA-HU-A4G8-01 16 30507871 30507871 C T ITGAL Nonsense_Mutation p.Q606* 0.29 TCGA-HU-A4G8-01 16 31046335 31046335 G A STX4 Missense_Mutation p.V118I 0.30 tolerated(0.37) benign(0.021) TCGA-HU-A4G8-01 16 31104662 31104662 C G VKORC1 Missense_Mutation p.C85S 0.17 deleterious(0.01) possibly_damaging(0.848) TCGA-HU-A4G8-01 16 3406271 3406271 G A OR2C1 Missense_Mutation p.E111K 0.17 deleterious(0) probably_damaging(0.994) TCGA-HU-A4G8-01 16 3452239 3452239 C T ZNF174 Silent p.L79L 0.23 TCGA-HU-A4G8-01 16 3817720 3817721 - T CREBBP Frame_Shift_Ins p.I1084Nfs*3 0.17 TCGA-HU-A4G8-01 16 4310529 4310529 T A TFAP4 Missense_Mutation p.Q198L 0.42 deleterious(0.05) unknown(0) TCGA-HU-A4G8-01 16 4310532 4310532 A T TFAP4 Missense_Mutation p.L197Q 0.40 tolerated(0.38) unknown(0) TCGA-HU-A4G8-01 16 48210854 48210854 G A ABCC11 Silent p.I1173I 0.38 TCGA-HU-A4G8-01 16 4829702 4829702 C - SEPT12 Frame_Shift_Del p.G271Afs*16 0.18 TCGA-HU-A4G8-01 16 4920883 4920883 G A UBN1 Missense_Mutation p.R490Q 0.34 deleterious(0.02) probably_damaging(0.999) TCGA-HU-A4G8-01 16 50345665 50345665 T C ADCY7 Missense_Mutation p.F806L 0.23 tolerated(0.05) possibly_damaging(0.751) TCGA-HU-A4G8-01 16 50388379 50388379 G A BRD7 Missense_Mutation p.P135S 0.25 deleterious(0) benign(0.118) TCGA-HU-A4G8-01 16 50745609 50745609 C T NOD2 Missense_Mutation p.T596M 0.21 tolerated(0.11) benign(0.012) TCGA-HU-A4G8-01 16 50745900 50745900 G A NOD2 Missense_Mutation p.C693Y 0.29 deleterious(0.02) possibly_damaging(0.786) TCGA-HU-A4G8-01 16 51174602 51174602 A G SALL1 Missense_Mutation p.Y511H 0.20 deleterious(0) benign(0.28) TCGA-HU-A4G8-01 16 51175644 51175646 GCC - SALL1 In_Frame_Del p.G163del 0.19 TCGA-HU-A4G8-01 16 55516934 55516934 T C MMP2 Silent p.L89L 0.21 TCGA-HU-A4G8-01 16 55907848 55907848 C T CES5A Missense_Mutation p.G88R 0.33 deleterious(0) probably_damaging(1) TCGA-HU-A4G8-01 16 58030556 58030556 G A ZNF319 Silent p.R538R 0.26 TCGA-HU-A4G8-01 16 61747819 61747819 T - CDH8 Frame_Shift_Del p.N527Tfs*51 0.22 TCGA-HU-A4G8-01 16 67208145 67208145 G A NOL3 Missense_Mutation p.A25T 0.40 tolerated(0.22) possibly_damaging(0.846) TCGA-HU-A4G8-01 16 67576619 67576620 - C FAM65A Frame_Shift_Ins p.S666Qfs*57 0.21 TCGA-HU-A4G8-01 16 67961375 67961375 C T PSKH1 Missense_Mutation p.R369C 0.31 deleterious(0.01) possibly_damaging(0.791) TCGA-HU-A4G8-01 16 70219800 70219800 C T CLEC18C Silent p.C408C 0.11 TCGA-HU-A4G8-01 16 71408718 71408718 G T CALB2 Missense_Mutation p.G81V 0.16 deleterious(0.01) probably_damaging(0.962) TCGA-HU-A4G8-01 16 71570593 71570593 A - CHST4 Frame_Shift_Del p.M7* 0.27 TCGA-HU-A4G8-01 16 72055072 72055072 C T DHODH Silent p.D189D 0.36 TCGA-HU-A4G8-01 16 72110827 72110827 C T HPR Silent p.G298G 0.27 TCGA-HU-A4G8-01 16 72124671 72124671 T C TXNL4B 5'UTR 0.24 TCGA-HU-A4G8-01 16 72131672 72131672 G A DHX38 Missense_Mutation p.R203Q 0.36 tolerated(0.14) benign(0.006) TCGA-HU-A4G8-01 16 727934 727934 G A RHBDL1 Missense_Mutation p.R400Q 0.26 tolerated(0.94) benign(0.002) TCGA-HU-A4G8-01 16 736817 736817 G A WDR24 Missense_Mutation p.A420V 0.16 tolerated(1) benign(0.004) TCGA-HU-A4G8-01 16 75563424 75563424 G A CHST5 Missense_Mutation p.R287C 0.25 deleterious(0) probably_damaging(0.953) TCGA-HU-A4G8-01 16 75681914 75681914 T C TERF2IP Missense_Mutation p.L45P 0.31 deleterious(0.05) benign(0.172) TCGA-HU-A4G8-01 16 84132786 84132786 G T MBTPS1 Missense_Mutation p.P98H 0.17 deleterious(0) probably_damaging(0.987) TCGA-HU-A4G8-01 16 85010039 85010039 G - ZDHHC7 Frame_Shift_Del p.S317Hfs*5 0.19 TCGA-HU-A4G8-01 16 87393913 87393913 C T FBXO31 Missense_Mutation p.V134I 0.24 deleterious(0.05) benign(0.008) TCGA-HU-A4G8-01 16 87678559 87678559 C T JPH3 Missense_Mutation p.R360C 0.32 deleterious(0) probably_damaging(0.993) TCGA-HU-A4G8-01 16 89294382 89294382 A G ZNF778 Missense_Mutation p.I534M 0.35 deleterious(0.01) possibly_damaging(0.879) TCGA-HU-A4G8-01 16 89347320 89347320 G - ANKRD11 Frame_Shift_Del p.P1877Rfs*86 0.19 TCGA-HU-A4G8-01 16 89644042 89644042 C T CPNE7 Silent p.R90R 0.36 TCGA-HU-A4G8-01 16 89776997 89776997 C T VPS9D1 Missense_Mutation p.V419I 0.31 tolerated(1) benign(0.001) TCGA-HU-A4G8-01 16 89986352 89986352 G A MC1R Missense_Mutation p.R229H 0.22 tolerated(0.31) benign(0.001) TCGA-HU-A4G8-01 16 90106801 90106801 C T GAS8 Missense_Mutation p.R369C 0.30 deleterious(0.03) possibly_damaging(0.528) TCGA-HU-A4G8-01 17 10533463 10533464 CT - MYH3 Frame_Shift_Del p.E1836Vfs*3 0.19 TCGA-HU-A4G8-01 17 11597638 11597638 A T DNAH9 Missense_Mutation p.R1582S 0.25 benign(0.06) TCGA-HU-A4G8-01 17 11607737 11607737 T C DNAH9 Missense_Mutation p.V1790A 0.21 probably_damaging(0.94) TCGA-HU-A4G8-01 17 11833395 11833395 G A DNAH9 Silent p.L4030L 0.11 TCGA-HU-A4G8-01 17 11896029 11896029 C T ZNF18 Missense_Mutation p.A40T 0.17 deleterious(0.02) probably_damaging(0.997) TCGA-HU-A4G8-01 17 12847430 12847430 C T ARHGAP44 Missense_Mutation p.H260Y 0.27 deleterious(0) probably_damaging(0.977) TCGA-HU-A4G8-01 17 14110514 14110514 G T COX10 Missense_Mutation p.G439V 0.30 tolerated_low_confidence(0.08) unknown(0) TCGA-HU-A4G8-01 17 1559716 1559716 G A PRPF8 Silent p.D1921D 0.19 TCGA-HU-A4G8-01 17 17398428 17398428 C T RASD1 3'UTR 0.32 TCGA-HU-A4G8-01 17 17699623 17699623 A G RAI1 Missense_Mutation p.S1121G 0.31 tolerated(0.11) benign(0.114) TCGA-HU-A4G8-01 17 18004893 18004893 C T DRG2 Missense_Mutation p.P240S 0.26 deleterious(0.02) benign(0.013) TCGA-HU-A4G8-01 17 1961160 1961160 G A HIC1 Silent p.P411P 0.20 TCGA-HU-A4G8-01 17 20108263 20108263 A - SPECC1 Frame_Shift_Del p.N303Tfs*63 0.24 TCGA-HU-A4G8-01 17 2139842 2139842 C T SMG6 Missense_Mutation p.R938H 0.14 tolerated(0.17) possibly_damaging(0.646) TCGA-HU-A4G8-01 17 26449740 26449740 T - NLK Frame_Shift_Del p.F192Lfs*30 0.23 TCGA-HU-A4G8-01 17 26666506 26666506 A G TNFAIP1 5'UTR 0.35 TCGA-HU-A4G8-01 17 26900838 26900838 G A ALDOC Missense_Mutation p.A305V 0.32 deleterious(0) probably_damaging(0.977) TCGA-HU-A4G8-01 17 26943781 26943782 AA - KIAA0100 Intron 0.20 TCGA-HU-A4G8-01 17 26943948 26943948 G A KIAA0100 Missense_Mutation p.R1994W 0.24 deleterious(0) probably_damaging(0.995) TCGA-HU-A4G8-01 17 27002006 27002006 A - SUPT6H Frame_Shift_Del p.M124Cfs*70 0.27 TCGA-HU-A4G8-01 17 27240131 27240131 T C PHF12 Silent p.T486T 0.25 TCGA-HU-A4G8-01 17 29161693 29161693 A - ATAD5 Frame_Shift_Del p.N200Mfs*6 0.22 TCGA-HU-A4G8-01 17 30180010 30180010 C T COPRS Missense_Mutation p.R69Q 0.25 tolerated(0.18) benign(0.003) TCGA-HU-A4G8-01 17 30213045 30213045 G A UTP6 Silent p.G219G 0.30 TCGA-HU-A4G8-01 17 30815147 30815147 C - CDK5R1 Frame_Shift_Del p.T172Rfs*56 0.22 TCGA-HU-A4G8-01 17 3101552 3101552 T - OR1A2 Frame_Shift_Del p.L249Yfs*14 0.20 TCGA-HU-A4G8-01 17 33690360 33690360 C T SLFN11 Missense_Mutation p.R156K 0.21 tolerated(1) benign(0) TCGA-HU-A4G8-01 17 34074067 34074067 C T GAS2L2 Silent p.T351T 0.30 TCGA-HU-A4G8-01 17 3448468 3448468 G A TRPV3 Missense_Mutation p.R73W 0.26 deleterious(0) probably_damaging(0.96) TCGA-HU-A4G8-01 17 35298007 35298007 G A LHX1 Silent p.A166A 0.21 TCGA-HU-A4G8-01 17 35872996 35872996 C T DUSP14 3'UTR 0.21 TCGA-HU-A4G8-01 17 35902432 35902432 C T SYNRG Silent p.T948T 0.21 TCGA-HU-A4G8-01 17 3629191 3629191 C T GSG2 Silent p.N654N 0.24 TCGA-HU-A4G8-01 17 36486853 36486853 T A GPR179 Nonsense_Mutation p.K867* 0.24 TCGA-HU-A4G8-01 17 36909032 36909032 T C PSMB3 5'UTR 0.35 TCGA-HU-A4G8-01 17 38182512 38182512 C T MED24 Missense_Mutation p.V628I 0.25 tolerated(0.57) benign(0.015) TCGA-HU-A4G8-01 17 3819462 3819462 G - P2RX1 Frame_Shift_Del p.R20Afs*16 0.19 TCGA-HU-A4G8-01 17 38285573 38285573 A - MSL1 Frame_Shift_Del p.T95Lfs*24 0.24 TCGA-HU-A4G8-01 17 3831309 3831309 C T ATP2A3 Silent p.S1035S 0.15 TCGA-HU-A4G8-01 17 39923746 39923746 C T JUP Missense_Mutation p.R265H 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-HU-A4G8-01 17 40255769 40255769 T C DHX58 Silent p.A537A 0.25 TCGA-HU-A4G8-01 17 40265758 40265758 T C KAT2A Missense_Mutation p.N808S 0.27 deleterious(0) probably_damaging(1) TCGA-HU-A4G8-01 17 40271408 40271408 G - KAT2A Frame_Shift_Del p.R310Afs*110 0.22 TCGA-HU-A4G8-01 17 40282409 40282409 C T RAB5C Missense_Mutation p.V71I 0.23 deleterious(0) possibly_damaging(0.796) TCGA-HU-A4G8-01 17 4075853 4075853 G A ANKFY1 Missense_Mutation p.T1088M 0.22 deleterious(0) probably_damaging(0.998) TCGA-HU-A4G8-01 17 40936457 40936457 G C WNK4 Missense_Mutation p.A344P 0.28 deleterious(0) unknown(0) TCGA-HU-A4G8-01 17 41720878 41720878 T C MEOX1 Missense_Mutation p.N207S 0.33 deleterious(0.01) benign(0.349) TCGA-HU-A4G8-01 17 42635401 42635402 GC - FZD2 Frame_Shift_Del p.R118Pfs*102 0.25 TCGA-HU-A4G8-01 17 42937314 42937314 G T EFTUD2 Missense_Mutation p.L607M 0.16 deleterious(0) probably_damaging(1) TCGA-HU-A4G8-01 17 43006324 43006324 G A KIF18B Missense_Mutation p.T529M 0.23 deleterious(0) probably_damaging(0.989) TCGA-HU-A4G8-01 17 43037433 43037433 G - C1QL1 3'UTR 0.23 TCGA-HU-A4G8-01 17 43198673 43198673 C T PLCD3 Missense_Mutation p.R77H 0.17 tolerated(0.11) benign(0.013) TCGA-HU-A4G8-01 17 44847269 44847269 G A WNT3 Silent p.G156G 0.34 TCGA-HU-A4G8-01 17 45915097 45915097 C T SCRN2 3'UTR 0.50 TCGA-HU-A4G8-01 17 46691692 46691692 G A HOXB8 Silent p.S125S 0.31 TCGA-HU-A4G8-01 17 4686188 4686188 C T TM4SF5 Silent p.C145C 0.16 TCGA-HU-A4G8-01 17 4805697 4805697 A G C17orf107 3'UTR 0.18 TCGA-HU-A4G8-01 17 48069029 48069029 G A DLX3 Missense_Mutation p.A239V 0.30 deleterious(0.03) benign(0.001) TCGA-HU-A4G8-01 17 48154746 48154746 G A ITGA3 Missense_Mutation p.G692R 0.18 tolerated(0.09) probably_damaging(0.998) TCGA-HU-A4G8-01 17 4837373 4837373 A - GP1BA Frame_Shift_Del p.T494Pfs*59 0.15 TCGA-HU-A4G8-01 17 4841682 4841682 C T SLC25A11 Missense_Mutation p.A197T 0.23 tolerated(0.29) benign(0.123) TCGA-HU-A4G8-01 17 4862827 4862827 G A SPAG7 3'UTR 0.23 TCGA-HU-A4G8-01 17 48655834 48655834 G A CACNA1G Missense_Mutation p.R737Q 0.24 tolerated(0.08) benign(0.007) TCGA-HU-A4G8-01 17 48777241 48777241 A T ANKRD40 Missense_Mutation p.D99E 0.24 tolerated(1) benign(0) TCGA-HU-A4G8-01 17 48918270 48918270 C T WFIKKN2 Missense_Mutation p.R541C 0.23 deleterious(0.03) possibly_damaging(0.713) TCGA-HU-A4G8-01 17 53045966 53045966 G T COX11 Missense_Mutation p.F14L 0.25 tolerated_low_confidence(0.93) benign(0.001) TCGA-HU-A4G8-01 17 53345077 53345077 T - HLF Intron 0.39 TCGA-HU-A4G8-01 17 53798224 53798224 C T TMEM100 Missense_Mutation p.V70M 0.23 deleterious(0.01) possibly_damaging(0.891) TCGA-HU-A4G8-01 17 55184399 55184399 C T AKAP1 Missense_Mutation p.S525L 0.26 tolerated(0.53) benign(0.008) TCGA-HU-A4G8-01 17 56386100 56386100 G A BZRAP1 Silent p.S1511S 0.29 TCGA-HU-A4G8-01 17 56620563 56620563 T C C17orf47 Missense_Mutation p.S329G 0.18 tolerated(0.37) benign(0.006) TCGA-HU-A4G8-01 17 58040394 58040394 A G RNFT1 Missense_Mutation p.V103A 0.17 tolerated(0.54) benign(0.002) TCGA-HU-A4G8-01 17 58262903 58262903 T - USP32 Frame_Shift_Del p.N1251Mfs*14 0.21 TCGA-HU-A4G8-01 17 61560426 61560426 A - ACE Frame_Shift_Del p.I462Lfs*63 0.22 TCGA-HU-A4G8-01 17 61838688 61838690 CTT - CCDC47 In_Frame_Del p.E190del 0.25 TCGA-HU-A4G8-01 17 61987900 61987900 C T CSHL1 Intron 0.29 TCGA-HU-A4G8-01 17 62049987 62049987 G - SCN4A Frame_Shift_Del p.P72Rfs*43 0.30 TCGA-HU-A4G8-01 17 62290289 62290289 G A TEX2 Missense_Mutation p.T430M 0.26 tolerated(0.17) benign(0.038) TCGA-HU-A4G8-01 17 65040940 65040940 G A CACNG1 Missense_Mutation p.R55Q 0.22 deleterious(0.01) probably_damaging(0.942) TCGA-HU-A4G8-01 17 67287378 67287378 C T ABCA5 Missense_Mutation p.G529R 0.21 deleterious(0) probably_damaging(1) TCGA-HU-A4G8-01 17 7132707 7132707 C T DVL2 Silent p.T269T 0.29 TCGA-HU-A4G8-01 17 7144115 7144115 G C GABARAP 3'UTR 0.27 TCGA-HU-A4G8-01 17 72348411 72348411 C T KIF19 Missense_Mutation p.R638W 0.38 deleterious(0) benign(0.021) TCGA-HU-A4G8-01 17 72353317 72353317 C T BTBD17 Missense_Mutation p.V306I 0.28 tolerated(0.33) benign(0.002) TCGA-HU-A4G8-01 17 72353616 72353616 C - BTBD17 Frame_Shift_Del p.G206Afs*3 0.35 TCGA-HU-A4G8-01 17 7256302 7256302 C T KCTD11 Missense_Mutation p.P14L 0.36 tolerated(0.33) benign(0.158) TCGA-HU-A4G8-01 17 72954478 72954478 G A HID1 Missense_Mutation p.R446C 0.29 deleterious(0) probably_damaging(0.932) TCGA-HU-A4G8-01 17 73502463 73502463 G A CASKIN2 Missense_Mutation p.R217C 0.21 deleterious(0.03) benign(0.003) TCGA-HU-A4G8-01 17 73663423 73663423 A G SAP30BP 5'UTR 0.33 TCGA-HU-A4G8-01 17 74015720 74015720 G A EVPL Silent p.A342A 0.17 TCGA-HU-A4G8-01 17 74401599 74401599 G C UBE2O Missense_Mutation p.S158C 0.21 deleterious(0.01) possibly_damaging(0.594) TCGA-HU-A4G8-01 17 74533661 74533661 C T CYGB 5'UTR 0.26 TCGA-HU-A4G8-01 17 7462459 7462460 - G TNFSF13 Frame_Shift_Ins p.A37Gfs*88 0.23 TCGA-HU-A4G8-01 17 7499231 7499231 C T FXR2 Missense_Mutation p.G248S 0.24 deleterious(0.02) probably_damaging(1) TCGA-HU-A4G8-01 17 75483595 75483595 C T SEPT9 Missense_Mutation p.R335C 0.22 deleterious(0) probably_damaging(0.964) TCGA-HU-A4G8-01 17 76415788 76415788 T - PGS1 Intron 0.17 TCGA-HU-A4G8-01 17 76565605 76565605 C T DNAH17 Missense_Mutation p.R350Q 0.20 benign(0.034) TCGA-HU-A4G8-01 17 7734442 7734442 G A DNAH2 Missense_Mutation p.G4090D 0.23 probably_damaging(1) TCGA-HU-A4G8-01 17 7750706 7750706 C G KDM6B Missense_Mutation p.T398S 0.18 unknown(0) TCGA-HU-A4G8-01 17 77926509 77926509 G A TBC1D16 Silent p.C296C 0.24 TCGA-HU-A4G8-01 17 78172609 78172609 G A CARD14 Intron 0.27 TCGA-HU-A4G8-01 17 78263597 78263597 A - RNF213 Frame_Shift_Del p.N360Tfs*9 0.23 TCGA-HU-A4G8-01 17 78280117 78280117 G A RNF213 Missense_Mutation p.R759Q 0.17 benign(0.37) TCGA-HU-A4G8-01 17 79203003 79203003 C T ENTHD2 Missense_Mutation p.E435K 0.42 tolerated(0.21) benign(0.002) TCGA-HU-A4G8-01 17 79426602 79426602 A G RP11-1055B8.7 Silent p.R1959R 0.25 TCGA-HU-A4G8-01 17 80010158 80010158 G - GPS1 5'UTR 0.12 TCGA-HU-A4G8-01 17 80019777 80019777 C T DUS1L Missense_Mutation p.R198Q 0.20 deleterious(0.01) possibly_damaging(0.662) TCGA-HU-A4G8-01 17 80615620 80615620 C T RAB40B 3'UTR 0.26 TCGA-HU-A4G8-01 17 80789298 80789298 G A ZNF750 Nonsense_Mutation p.Q345* 0.27 TCGA-HU-A4G8-01 17 9632150 9632150 T C USP43 Missense_Mutation p.L1072P 0.20 deleterious(0) possibly_damaging(0.904) TCGA-HU-A4G8-01 18 10550245 10550245 A G NAPG 3'UTR 0.40 TCGA-HU-A4G8-01 18 11752326 11752326 A G GNAL Intron 0.25 TCGA-HU-A4G8-01 18 12326000 12326000 T C TUBB6 Silent p.D404D 0.25 TCGA-HU-A4G8-01 18 14478138 14478138 G A CXADRP3 RNA 0.24 TCGA-HU-A4G8-01 18 14543190 14543190 C T POTEC 5'Flank 0.18 TCGA-HU-A4G8-01 18 19263897 19263897 G A ABHD3 Missense_Mutation p.A180V 0.23 deleterious(0.05) possibly_damaging(0.529) TCGA-HU-A4G8-01 18 21123487 21123487 C A NPC1 Missense_Mutation p.R726M 0.20 deleterious(0) probably_damaging(0.996) TCGA-HU-A4G8-01 18 2743871 2743871 T C SMCHD1 Missense_Mutation p.L1249P 0.18 deleterious(0) probably_damaging(0.999) TCGA-HU-A4G8-01 18 31326159 31326159 C T ASXL3 Missense_Mutation p.A2116V 0.23 possibly_damaging(0.78) TCGA-HU-A4G8-01 18 32843953 32843953 T C ZSCAN30 Missense_Mutation p.M122V 0.29 tolerated(0.25) benign(0.002) TCGA-HU-A4G8-01 18 33243648 33243648 G A GALNT1 Missense_Mutation p.V66I 0.15 tolerated(0.62) benign(0) TCGA-HU-A4G8-01 18 34854292 34854292 G A CELF4 Silent p.Y261Y 0.24 TCGA-HU-A4G8-01 18 39644789 39644789 A - PIK3C3 Frame_Shift_Del p.K841Rfs*8 0.23 TCGA-HU-A4G8-01 18 42281745 42281746 - A SETBP1 Frame_Shift_Ins p.N147Kfs*2 0.17 TCGA-HU-A4G8-01 18 43459143 43459143 A - EPG5 Frame_Shift_Del p.Y1902Ifs*26 0.20 TCGA-HU-A4G8-01 18 47095891 47095891 G A LIPG Missense_Mutation p.V182M 0.20 deleterious(0.04) probably_damaging(0.992) TCGA-HU-A4G8-01 18 47402095 47402095 G A MYO5B Silent p.L1167L 0.25 TCGA-HU-A4G8-01 18 54358982 54358982 G A WDR7 Silent p.V300V 0.20 TCGA-HU-A4G8-01 18 55143924 55143924 C T ONECUT2 Missense_Mutation p.S495L 0.19 deleterious_low_confidence(0.01) benign(0.198) TCGA-HU-A4G8-01 18 55268827 55268827 T - NARS 3'UTR 0.11 TCGA-HU-A4G8-01 18 56001085 56001085 T C NEDD4L Silent p.S342S 0.17 TCGA-HU-A4G8-01 18 56052795 56052795 A G NEDD4L Missense_Mutation p.K822E 0.18 tolerated(0.27) probably_damaging(0.997) TCGA-HU-A4G8-01 18 56586743 56586743 G A ZNF532 Silent p.S408S 0.25 TCGA-HU-A4G8-01 18 61305210 61305210 T C SERPINB4 Missense_Mutation p.N306D 0.09 tolerated(1) benign(0.001) TCGA-HU-A4G8-01 18 63547804 63547804 C A CDH7 Silent p.R678R 0.29 TCGA-HU-A4G8-01 18 65181597 65181597 A G DSEL Silent p.H93H 0.20 TCGA-HU-A4G8-01 18 66721376 66721377 - C CCDC102B 3'UTR 0.18 TCGA-HU-A4G8-01 18 67684750 67684750 A G RTTN Missense_Mutation p.L2105P 0.16 deleterious(0) probably_damaging(0.977) TCGA-HU-A4G8-01 18 677834 677834 C T ENOSF1 Silent p.A326A 0.22 TCGA-HU-A4G8-01 18 6948434 6948434 G A LAMA1 Missense_Mutation p.T2893I 0.23 deleterious(0.02) probably_damaging(0.918) TCGA-HU-A4G8-01 18 72173217 72173217 G A CNDP2 Missense_Mutation p.S113N 0.34 deleterious(0) benign(0.1) TCGA-HU-A4G8-01 18 74091456 74091456 C T ZNF516 Missense_Mutation p.G872R 0.24 tolerated(0.1) benign(0.406) TCGA-HU-A4G8-01 18 74561514 74561514 A G ZNF236 Missense_Mutation p.N28D 0.16 tolerated_low_confidence(0.13) benign(0.002) TCGA-HU-A4G8-01 18 76753350 76753350 C T SALL3 Silent p.C453C 0.18 TCGA-HU-A4G8-01 18 76754298 76754298 G A SALL3 Silent p.T769T 0.24 TCGA-HU-A4G8-01 18 77475506 77475506 G A CTDP1 Silent p.T682T 0.33 TCGA-HU-A4G8-01 19 10227521 10227521 C T EIF3G Missense_Mutation p.E184K 0.41 tolerated(0.31) benign(0.011) TCGA-HU-A4G8-01 19 10401749 10401749 G A ICAM5 Silent p.A28A 0.25 TCGA-HU-A4G8-01 19 1043781 1043781 A G ABCA7 Missense_Mutation p.M330V 0.21 tolerated(0.22) benign(0) TCGA-HU-A4G8-01 19 10463110 10463110 C T TYK2 Silent p.T1106T 0.28 TCGA-HU-A4G8-01 19 10655661 10655662 TG - ATG4D Frame_Shift_Del p.S118Pfs*60 0.20 TCGA-HU-A4G8-01 19 10662902 10662902 C T ATG4D Missense_Mutation p.R382C 0.25 deleterious(0) probably_damaging(0.998) TCGA-HU-A4G8-01 19 1080261 1080261 G A HMHA1 Missense_Mutation p.V587I 0.25 tolerated(0.41) benign(0.008) TCGA-HU-A4G8-01 19 1085954 1085954 C T HMHA1 Silent p.G1136G 0.25 TCGA-HU-A4G8-01 19 10893768 10893768 C T DNM2 Missense_Mutation p.T274M 0.20 deleterious(0) probably_damaging(1) TCGA-HU-A4G8-01 19 11144498 11144498 C T SMARCA4 Missense_Mutation p.P1277L 0.36 benign(0) TCGA-HU-A4G8-01 19 11411781 11411781 C T TSPAN16 Intron 0.43 TCGA-HU-A4G8-01 19 11485602 11485602 C - SWSAP1 Frame_Shift_Del p.Q62Rfs*37 0.17 TCGA-HU-A4G8-01 19 12575800 12575800 T - ZNF709 Frame_Shift_Del p.K312Nfs*44 0.17 TCGA-HU-A4G8-01 19 12866266 12866266 C T BEST2 Missense_Mutation p.T237M 0.28 deleterious(0.01) probably_damaging(1) TCGA-HU-A4G8-01 19 14508025 14508025 C A CD97 Silent p.T205T 0.23 TCGA-HU-A4G8-01 19 1461988 1461988 C T APC2 Silent p.S555S 0.29 TCGA-HU-A4G8-01 19 14705584 14705584 C T CLEC17A Silent p.A125A 0.26 TCGA-HU-A4G8-01 19 14952157 14952157 A - OR7A10 Frame_Shift_Del p.F178Sfs*20 0.18 TCGA-HU-A4G8-01 19 15289695 15289695 C T NOTCH3 Missense_Mutation p.G1259D 0.24 deleterious(0) probably_damaging(1) TCGA-HU-A4G8-01 19 15383773 15383773 C T BRD4 Silent p.P46P 0.19 TCGA-HU-A4G8-01 19 1556729 1556729 G A MEX3D Silent p.A263A 0.34 TCGA-HU-A4G8-01 19 16628135 16628135 G A C19orf44 3'UTR 0.24 TCGA-HU-A4G8-01 19 16632444 16632444 G A CHERP Missense_Mutation p.P668S 0.30 tolerated(0.07) benign(0.168) TCGA-HU-A4G8-01 19 17038989 17038989 G A CPAMD8 Missense_Mutation p.P1114L 0.26 tolerated(0.1) benign(0.021) TCGA-HU-A4G8-01 19 17476389 17476389 T C PLVAP Silent p.E295E 0.27 TCGA-HU-A4G8-01 19 18249863 18249863 G A MAST3 Missense_Mutation p.D683N 0.24 deleterious(0) benign(0.034) TCGA-HU-A4G8-01 19 1854668 1854668 G A KLF16 Silent p.G183G 0.33 TCGA-HU-A4G8-01 19 18778859 18778859 C T KLHL26 Silent p.L218L 0.30 TCGA-HU-A4G8-01 19 20235848 20235848 C T CTC-260E6.2 RNA 0.43 TCGA-HU-A4G8-01 19 21365724 21365725 - A ZNF431 Frame_Shift_Ins p.C209Mfs*15 0.14 TCGA-HU-A4G8-01 19 21719281 21719281 C T ZNF429 Silent p.S142S 0.26 TCGA-HU-A4G8-01 19 2210766 2210766 C - DOT1L Frame_Shift_Del p.E423Sfs*66 0.17 TCGA-HU-A4G8-01 19 23406702 23406702 T - ZNF724P Frame_Shift_Del p.G116Afs*22 0.26 TCGA-HU-A4G8-01 19 2515016 2515016 A G GNG7 3'UTR 0.38 TCGA-HU-A4G8-01 19 30935279 30935279 G A ZNF536 Silent p.P270P 0.32 TCGA-HU-A4G8-01 19 31038892 31038892 C T ZNF536 Missense_Mutation p.T789M 0.17 deleterious(0) probably_damaging(1) TCGA-HU-A4G8-01 19 31770574 31770574 G A TSHZ3 Missense_Mutation p.S42L 0.21 tolerated(0.08) benign(0.015) TCGA-HU-A4G8-01 19 33471104 33471104 A G RHPN2 Missense_Mutation p.L620S 0.24 deleterious(0.02) probably_damaging(0.999) TCGA-HU-A4G8-01 19 33621086 33621086 G A GPATCH1 3'UTR 0.13 TCGA-HU-A4G8-01 19 33698558 33698558 C T LRP3 3'UTR 0.24 TCGA-HU-A4G8-01 19 34263256 34263256 A G CHST8 Missense_Mutation p.D188G 0.29 deleterious(0) probably_damaging(0.977) TCGA-HU-A4G8-01 19 3462857 3462857 A G NFIC 3'UTR 0.28 TCGA-HU-A4G8-01 19 3542859 3542859 G - MFSD12 Frame_Shift_Del p.L513Wfs*30 0.22 TCGA-HU-A4G8-01 19 36159365 36159365 C A UPK1A Missense_Mutation p.L32M 0.16 tolerated(0.08) possibly_damaging(0.472) TCGA-HU-A4G8-01 19 3633467 3633467 C G PIP5K1C Missense_Mutation p.A658P 0.30 tolerated_low_confidence(0.08) benign(0) TCGA-HU-A4G8-01 19 36594611 36594611 G A WDR62 Missense_Mutation p.R1294Q 0.19 tolerated(0.1) benign(0.283) TCGA-HU-A4G8-01 19 36612466 36612466 C T TBCB Silent p.G131G 0.40 TCGA-HU-A4G8-01 19 37038564 37038564 C T ZNF529 Missense_Mutation p.R299Q 0.27 tolerated(0.75) benign(0.028) TCGA-HU-A4G8-01 19 37210374 37210375 - A ZNF567 Frame_Shift_Ins p.H222Tfs*5 0.19 TCGA-HU-A4G8-01 19 37210793 37210793 T C ZNF567 Silent p.G358G 0.16 TCGA-HU-A4G8-01 19 37413725 37413725 T G ZNF568 Missense_Mutation p.L18W 0.30 deleterious_low_confidence(0.01) benign(0.114) TCGA-HU-A4G8-01 19 38876364 38876364 G A GGN Missense_Mutation p.A513V 0.26 tolerated_low_confidence(0.3) unknown(0) TCGA-HU-A4G8-01 19 39214837 39214837 C T ACTN4 Missense_Mutation p.P578L 0.24 deleterious(0.02) benign(0.184) TCGA-HU-A4G8-01 19 39694512 39694512 G A SYCN Missense_Mutation p.A128V 0.30 tolerated(0.09) benign(0.313) TCGA-HU-A4G8-01 19 39963908 39963908 C T SUPT5H Missense_Mutation p.T775M 0.28 deleterious(0) probably_damaging(0.997) TCGA-HU-A4G8-01 19 40317449 40317449 G A DYRK1B Missense_Mutation p.A425V 0.67 deleterious(0.01) possibly_damaging(0.722) TCGA-HU-A4G8-01 19 40366367 40366367 C T FCGBP Missense_Mutation p.D4623N 0.27 probably_damaging(1) TCGA-HU-A4G8-01 19 40398355 40398355 C T FCGBP Silent p.A2204A 0.11 TCGA-HU-A4G8-01 19 40480308 40480308 C - PSMC4 Frame_Shift_Del p.E146Kfs*7 0.23 TCGA-HU-A4G8-01 19 40722039 40722039 C T TTC9B 3'UTR 0.21 TCGA-HU-A4G8-01 19 41271080 41271081 - C SNRPA 3'UTR 0.28 TCGA-HU-A4G8-01 19 41455038 41455038 G A AC092071.1 3'Flank 0.31 TCGA-HU-A4G8-01 19 42791355 42791355 C T CIC Missense_Mutation p.R139W 0.20 probably_damaging(0.982) TCGA-HU-A4G8-01 19 42880019 42880020 - G MEGF8 Frame_Shift_Ins p.A2479Gfs*102 0.16 TCGA-HU-A4G8-01 19 42930555 42930555 C T LIPE Silent p.T249T 0.28 TCGA-HU-A4G8-01 19 44223311 44223311 C T IRGC Missense_Mutation p.R201W 0.23 deleterious(0.03) probably_damaging(0.912) TCGA-HU-A4G8-01 19 44223343 44223343 C T IRGC Silent p.R211R 0.12 TCGA-HU-A4G8-01 19 44740715 44740715 C T ZNF227 Missense_Mutation p.T711M 0.20 deleterious(0) probably_damaging(0.999) TCGA-HU-A4G8-01 19 44933212 44933212 G A ZNF229 Missense_Mutation p.R582W 0.22 tolerated(0.07) benign(0.017) TCGA-HU-A4G8-01 19 44946745 44946745 A G ZNF229 Splice_Site p.X31_splice 0.26 TCGA-HU-A4G8-01 19 45895270 45895270 C - PPP1R13L Frame_Shift_Del p.P562Rfs*75 0.23 TCGA-HU-A4G8-01 19 47236438 47236438 C T STRN4 Missense_Mutation p.V199I 0.17 deleterious(0.02) benign(0.113) TCGA-HU-A4G8-01 19 47570052 47570052 C - ZC3H4 Frame_Shift_Del p.G1158Afs*102 0.21 TCGA-HU-A4G8-01 19 47858522 47858522 C T DHX34 Missense_Mutation p.S311L 0.20 deleterious(0) probably_damaging(1) TCGA-HU-A4G8-01 19 47940742 47940742 A - SLC8A2 Frame_Shift_Del p.L696* 0.19 TCGA-HU-A4G8-01 19 47951360 47951360 G A SLC8A2 Missense_Mutation p.A490V 0.14 tolerated(0.08) benign(0.341) TCGA-HU-A4G8-01 19 48640806 48640806 G A LIG1 Silent p.R409R 0.26 TCGA-HU-A4G8-01 19 49129478 49129478 C T SPHK2 Missense_Mutation p.R124W 0.23 deleterious(0) benign(0.062) TCGA-HU-A4G8-01 19 49253765 49253765 G A FUT1 Silent p.F258F 0.28 TCGA-HU-A4G8-01 19 49362884 49362884 A G PLEKHA4 Silent p.G178G 0.32 TCGA-HU-A4G8-01 19 4954424 4954426 GGA - UHRF1 RNA 0.30 TCGA-HU-A4G8-01 19 49558897 49558897 G A CGB7 5'UTR 0.56 TCGA-HU-A4G8-01 19 49983624 49983624 C T FLT3LG Missense_Mutation p.P184L 0.25 tolerated(0.68) possibly_damaging(0.713) TCGA-HU-A4G8-01 19 50027778 50027778 C T FCGRT Missense_Mutation p.R206C 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-HU-A4G8-01 19 50098868 50098868 G A PRR12 Missense_Mutation p.A426T 0.21 possibly_damaging(0.695) TCGA-HU-A4G8-01 19 50099983 50099984 - C PRR12 Frame_Shift_Ins p.Q800Pfs*26 0.25 TCGA-HU-A4G8-01 19 50183169 50183169 C T PRMT1 Missense_Mutation p.P26L 0.33 tolerated(0.13) benign(0) TCGA-HU-A4G8-01 19 50243410 50243410 C T TSKS Missense_Mutation p.V510I 0.20 tolerated(0.26) benign(0.014) TCGA-HU-A4G8-01 19 50303257 50303257 C T AP2A1 Silent p.Y435Y 0.28 TCGA-HU-A4G8-01 19 50764740 50764740 G A MYH14 Silent p.A811A 0.23 TCGA-HU-A4G8-01 19 50949190 50949190 G A MYBPC2 Missense_Mutation p.R396H 0.22 deleterious(0.01) probably_damaging(0.99) TCGA-HU-A4G8-01 19 50957558 50957558 C T MYBPC2 Missense_Mutation p.S649L 0.20 deleterious(0.03) possibly_damaging(0.804) TCGA-HU-A4G8-01 19 51021575 51021575 G A LRRC4B Silent p.G465G 0.16 TCGA-HU-A4G8-01 19 51919202 51919202 G A SIGLEC10 Missense_Mutation p.A325V 0.24 deleterious(0) probably_damaging(1) TCGA-HU-A4G8-01 19 52394795 52394795 T G ZNF649 Missense_Mutation p.R198S 0.26 tolerated(0.15) benign(0.214) TCGA-HU-A4G8-01 19 52496837 52496837 G T ZNF615 Missense_Mutation p.R509S 0.25 tolerated(0.99) possibly_damaging(0.843) TCGA-HU-A4G8-01 19 52716018 52716018 G A PPP2R1A Missense_Mutation p.V195M 0.25 tolerated(0.07) benign(0.315) TCGA-HU-A4G8-01 19 52794058 52794058 G A ZNF766 Silent p.G338G 0.22 TCGA-HU-A4G8-01 19 53056441 53056442 AA - ZNF808 Frame_Shift_Del p.R92Tfs*15 0.15 TCGA-HU-A4G8-01 19 53667683 53667683 G A ZNF665 3'UTR 0.36 TCGA-HU-A4G8-01 19 5456475 5456475 C A ZNRF4 Missense_Mutation p.L325M 0.21 deleterious(0) probably_damaging(1) TCGA-HU-A4G8-01 19 54725110 54725110 C T LILRB3 Missense_Mutation p.R267H 0.55 tolerated(0.35) benign(0.02) TCGA-HU-A4G8-01 19 54745900 54745900 A G LILRA6 Splice_Site p.X119_splice 0.15 TCGA-HU-A4G8-01 19 55512184 55512184 A - NLRP2 Frame_Shift_Del p.N1038Tfs*4 0.17 TCGA-HU-A4G8-01 19 55607456 55607456 G - PPP1R12C Frame_Shift_Del p.I373Sfs*51 0.24 TCGA-HU-A4G8-01 19 55656925 55656925 G A TNNT1 Missense_Mutation p.R39C 0.27 deleterious(0) unknown(0) TCGA-HU-A4G8-01 19 55665463 55665463 G T TNNI3 Silent p.R162R 0.21 TCGA-HU-A4G8-01 19 55677303 55677303 G T DNAAF3 Missense_Mutation p.L119I 0.18 deleterious(0.05) probably_damaging(0.956) TCGA-HU-A4G8-01 19 56249722 56249722 A - NLRP9 Frame_Shift_Del p.S7Rfs*9 0.22 TCGA-HU-A4G8-01 19 56369147 56369147 G T NLRP4 Nonsense_Mutation p.E130* 0.17 TCGA-HU-A4G8-01 19 56600281 56600281 G A ZNF787 Missense_Mutation p.T87M 0.18 deleterious(0.01) probably_damaging(0.986) TCGA-HU-A4G8-01 19 5679653 5679654 - G C19orf70 Frame_Shift_Ins p.A51Rfs*32 0.24 TCGA-HU-A4G8-01 19 56953519 56953519 T C ZNF667 Missense_Mutation p.K282R 0.31 tolerated(0.08) benign(0.081) TCGA-HU-A4G8-01 19 56969605 56969605 G A ZNF667 Missense_Mutation p.R58W 0.17 tolerated(0.2) probably_damaging(0.985) TCGA-HU-A4G8-01 19 57175988 57175988 C T ZNF835 Silent p.P193P 0.20 TCGA-HU-A4G8-01 19 57328919 57328919 T - PEG3 Frame_Shift_Del p.K297Nfs*17 0.28 TCGA-HU-A4G8-01 19 57670628 57670628 T C DUXA Missense_Mutation p.R67G 0.27 deleterious(0.01) possibly_damaging(0.9) TCGA-HU-A4G8-01 19 57743929 57743929 C T AURKC Silent p.L106L 0.19 TCGA-HU-A4G8-01 19 57955516 57955516 T - ZNF749 Frame_Shift_Del p.F335Lfs*95 0.20 TCGA-HU-A4G8-01 19 58490108 58490108 G A ZNF606 Missense_Mutation p.T647I 0.23 deleterious(0) probably_damaging(0.998) TCGA-HU-A4G8-01 19 6375793 6375793 C - PSPN Frame_Shift_Del p.G23Afs*49 0.19 TCGA-HU-A4G8-01 19 6697683 6697683 G A C3 Missense_Mutation p.R855W 0.11 tolerated(0.09) benign(0.088) TCGA-HU-A4G8-01 19 7616251 7616251 G A PNPLA6 Missense_Mutation p.V739M 0.23 deleterious(0.01) possibly_damaging(0.508) TCGA-HU-A4G8-01 19 7735136 7735136 C T RETN Silent p.S76S 0.24 TCGA-HU-A4G8-01 19 7754212 7754212 C T FCER2 Missense_Mutation p.G278D 0.21 tolerated(1) benign(0.007) TCGA-HU-A4G8-01 19 813080 813080 C T LPPR3 Silent p.P577P 0.26 TCGA-HU-A4G8-01 19 813181 813181 G A LPPR3 Missense_Mutation p.R544C 0.20 deleterious(0) probably_damaging(0.988) TCGA-HU-A4G8-01 19 830738 830738 G A AZU1 Missense_Mutation p.V131M 0.17 deleterious(0) probably_damaging(0.985) TCGA-HU-A4G8-01 19 9015691 9015691 T G MUC16 Missense_Mutation p.K12711T 0.27 benign(0.344) TCGA-HU-A4G8-01 19 9213230 9213230 T C OR7G2 Silent p.S251S 0.21 TCGA-HU-A4G8-01 19 9922074 9922074 C T FBXL12 Missense_Mutation p.R160H 0.19 tolerated(0.06) benign(0.101) TCGA-HU-A4G8-01 19 9965426 9965426 C T OLFM2 Silent p.A267A 0.28 TCGA-HU-A4G8-01 1 100571405 100571405 T A SASS6 Missense_Mutation p.D488V 0.21 deleterious(0.04) benign(0.015) TCGA-HU-A4G8-01 1 10699245 10699245 C G CASZ1 Missense_Mutation p.E1678D 0.40 tolerated_low_confidence(0.46) unknown(0) TCGA-HU-A4G8-01 1 10707842 10707844 TCA - CASZ1 Intron 0.25 TCGA-HU-A4G8-01 1 10719929 10719929 C T CASZ1 Silent p.P390P 0.20 TCGA-HU-A4G8-01 1 108679262 108679262 A - SLC25A24 3'UTR 0.20 TCGA-HU-A4G8-01 1 109191480 109191480 C T HENMT1 Missense_Mutation p.R297Q 0.27 tolerated(0.32) benign(0.002) TCGA-HU-A4G8-01 1 109479802 109479803 TC - CLCC1 Frame_Shift_Del p.D427Cfs*2 0.25 TCGA-HU-A4G8-01 1 109772108 109772108 C T SARS Missense_Mutation p.R121W 0.23 deleterious(0.02) possibly_damaging(0.676) TCGA-HU-A4G8-01 1 110884619 110884619 T C RBM15 Silent p.P864P 0.26 TCGA-HU-A4G8-01 1 112309020 112309020 T C DDX20 Silent p.S658S 0.24 TCGA-HU-A4G8-01 1 114448226 114448226 C - DCLRE1B Frame_Shift_Del p.H8Ifs*75 0.23 TCGA-HU-A4G8-01 1 114940422 114940422 T C TRIM33 Missense_Mutation p.T1078A 0.20 tolerated(0.09) benign(0.019) TCGA-HU-A4G8-01 1 115829311 115829311 G T NGF Missense_Mutation p.H36N 0.29 tolerated(0.45) benign(0.424) TCGA-HU-A4G8-01 1 117078722 117078722 G A CD58 Nonsense_Mutation p.Q165* 0.21 TCGA-HU-A4G8-01 1 117122035 117122035 C T IGSF3 Missense_Mutation p.G1125S 0.23 tolerated(0.52) benign(0.001) TCGA-HU-A4G8-01 1 117504095 117504095 C T PTGFRN Missense_Mutation p.R482W 0.18 deleterious(0) probably_damaging(1) TCGA-HU-A4G8-01 1 117656056 117656056 C T TRIM45 Missense_Mutation p.V507M 0.16 tolerated(0.06) benign(0.085) TCGA-HU-A4G8-01 1 118413059 118413059 A - GDAP2 3'UTR 0.30 TCGA-HU-A4G8-01 1 12091845 12091845 G A MIIP Missense_Mutation p.V383I 0.24 tolerated(0.32) unknown(0) TCGA-HU-A4G8-01 1 1262395 1262395 C T GLTPD1 Silent p.S35S 0.21 TCGA-HU-A4G8-01 1 1289254 1289254 G T MXRA8 Missense_Mutation p.P426H 0.28 deleterious(0) probably_damaging(0.998) TCGA-HU-A4G8-01 1 14107207 14107207 C T PRDM2 Missense_Mutation p.P973S 0.25 unknown(0) TCGA-HU-A4G8-01 1 1416256 1416256 A G ATAD3B Missense_Mutation p.N152D 0.12 deleterious(0.02) possibly_damaging(0.493) TCGA-HU-A4G8-01 1 145015953 145015953 A G RP11-326G21.1 5'Flank 0.07 TCGA-HU-A4G8-01 1 145473393 145473393 G A ANKRD34A Missense_Mutation p.R22H 0.21 deleterious(0) probably_damaging(0.998) TCGA-HU-A4G8-01 1 147096667 147096667 C - BCL9 Frame_Shift_Del p.P1398Hfs*3 0.18 TCGA-HU-A4G8-01 1 148343698 148343698 A G NBPF20 Missense_Mutation p.L130P 0.15 possibly_damaging(0.774) TCGA-HU-A4G8-01 1 150526176 150526179 CAGA - ADAMTSL4 Frame_Shift_Del p.T238Rfs*31 0.14 TCGA-HU-A4G8-01 1 150923047 150923047 G A SETDB1 Missense_Mutation p.R565H 0.27 deleterious(0.01) probably_damaging(0.98) TCGA-HU-A4G8-01 1 151110219 151110219 C T SEMA6C Missense_Mutation p.E242K 0.23 deleterious(0) probably_damaging(0.962) TCGA-HU-A4G8-01 1 151740655 151740655 G A OAZ3 Missense_Mutation p.R97H 0.35 tolerated(0.92) benign(0) TCGA-HU-A4G8-01 1 152193646 152193646 T G HRNR Missense_Mutation p.E153D 0.30 possibly_damaging(0.878) TCGA-HU-A4G8-01 1 152538492 152538492 G A LCE3E Missense_Mutation p.R65C 0.22 deleterious_low_confidence(0.02) unknown(0) TCGA-HU-A4G8-01 1 153745768 153745768 C - INTS3 3'UTR 0.15 TCGA-HU-A4G8-01 1 154293725 154293725 T C AQP10 Missense_Mutation p.F32L 0.27 tolerated(0.39) possibly_damaging(0.814) TCGA-HU-A4G8-01 1 154932028 154932028 G - PYGO2 Frame_Shift_Del p.Q150Rfs*11 0.22 TCGA-HU-A4G8-01 1 155257991 155257991 C T HCN3 Missense_Mutation p.R688C 0.30 tolerated_low_confidence(0.11) benign(0) TCGA-HU-A4G8-01 1 155265285 155265285 G A PKLR Silent p.P150P 0.30 TCGA-HU-A4G8-01 1 155449044 155449044 T A ASH1L Missense_Mutation p.D1206V 0.24 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-HU-A4G8-01 1 156128200 156128200 C A SEMA4A Missense_Mutation p.R129S 0.18 deleterious(0) probably_damaging(0.942) TCGA-HU-A4G8-01 1 156642804 156642804 G - NES Frame_Shift_Del p.T393Hfs*9 0.25 TCGA-HU-A4G8-01 1 156914828 156914828 G - ARHGEF11 Frame_Shift_Del p.L992Wfs*15 0.23 TCGA-HU-A4G8-01 1 158045968 158045968 C T KIRREL Missense_Mutation p.L40F 0.30 deleterious(0) benign(0.109) TCGA-HU-A4G8-01 1 158576398 158576398 C - OR10Z1 Frame_Shift_Del p.M59Cfs*78 0.22 TCGA-HU-A4G8-01 1 158637847 158637847 T C SPTA1 Missense_Mutation p.I613M 0.21 tolerated(0.1) possibly_damaging(0.528) TCGA-HU-A4G8-01 1 158724937 158724937 C A OR6K6 Missense_Mutation p.S111Y 0.17 tolerated(0.09) benign(0.021) TCGA-HU-A4G8-01 1 158813817 158813817 C T MNDA Missense_Mutation p.P159S 0.19 tolerated(0.25) benign(0.023) TCGA-HU-A4G8-01 1 159410041 159410041 A T OR10J1 Missense_Mutation p.I165F 0.22 tolerated(0.47) benign(0.005) TCGA-HU-A4G8-01 1 159558586 159558586 A G APCS 3'UTR 0.26 TCGA-HU-A4G8-01 1 160141484 160141484 G A ATP1A4 Missense_Mutation p.M597I 0.22 deleterious(0.01) benign(0.033) TCGA-HU-A4G8-01 1 160460408 160460408 G A SLAMF6 Silent p.F238F 0.25 TCGA-HU-A4G8-01 1 161018867 161018867 A G ARHGAP30 Silent p.G648G 0.27 TCGA-HU-A4G8-01 1 161021121 161021121 A G ARHGAP30 Missense_Mutation p.L468P 0.21 tolerated_low_confidence(0.41) benign(0.002) TCGA-HU-A4G8-01 1 161183479 161183479 G A NDUFS2 Missense_Mutation p.R418H 0.19 deleterious(0.01) probably_damaging(0.967) TCGA-HU-A4G8-01 1 161928324 161928324 G A ATF6 Silent p.S631S 0.26 TCGA-HU-A4G8-01 1 16257385 16257385 G T SPEN Missense_Mutation p.E1550D 0.22 benign(0.001) TCGA-HU-A4G8-01 1 165532982 165532982 C T LRRC52 Missense_Mutation p.A288V 0.23 tolerated(0.51) benign(0.001) TCGA-HU-A4G8-01 1 16907320 16907320 T C NBPF1 Missense_Mutation p.E504G 0.04 deleterious(0.05) probably_damaging(0.995) TCGA-HU-A4G8-01 1 16945672 16945672 T C RP5-1182A14.5 3'Flank 0.05 TCGA-HU-A4G8-01 1 169951178 169951178 T C KIFAP3 Missense_Mutation p.D578G 0.15 deleterious(0.05) possibly_damaging(0.546) TCGA-HU-A4G8-01 1 172558810 172558810 G A SUCO Missense_Mutation p.V857M 0.18 tolerated(0.27) benign(0.017) TCGA-HU-A4G8-01 1 17265406 17265406 C T CROCC Silent p.A459A 0.12 TCGA-HU-A4G8-01 1 1736014 1736014 C T GNB1 Missense_Mutation p.A92T 0.36 tolerated(0.06) benign(0.037) TCGA-HU-A4G8-01 1 17418909 17418909 C T PADI2 Missense_Mutation p.V217M 0.26 deleterious(0.03) benign(0.028) TCGA-HU-A4G8-01 1 175097762 175097762 C T TNN Silent p.C1070C 0.25 TCGA-HU-A4G8-01 1 175916354 175916354 C T RFWD2 Missense_Mutation p.A719T 0.22 deleterious(0) probably_damaging(0.911) TCGA-HU-A4G8-01 1 176564479 176564479 G - PAPPA2 Frame_Shift_Del p.V581Lfs*4 0.19 TCGA-HU-A4G8-01 1 177001903 177001903 C T ASTN1 Missense_Mutation p.R185Q 0.22 deleterious_low_confidence(0.01) benign(0.016) TCGA-HU-A4G8-01 1 179504046 179504046 G C AXDND1 Missense_Mutation p.E994Q 0.25 tolerated(0.2) unknown(0) TCGA-HU-A4G8-01 1 181701896 181701897 TG - CACNA1E Frame_Shift_Del p.C892* 0.25 TCGA-HU-A4G8-01 1 181767644 181767644 T C CACNA1E Missense_Mutation p.C2206R 0.23 tolerated(0.24) benign(0.004) TCGA-HU-A4G8-01 1 182026250 182026250 C T ZNF648 Missense_Mutation p.R299H 0.28 deleterious(0.04) possibly_damaging(0.631) TCGA-HU-A4G8-01 1 182617322 182617322 T C RGS8 Missense_Mutation p.K122E 0.32 deleterious(0) benign(0.318) TCGA-HU-A4G8-01 1 182853931 182853932 TA - DHX9 Frame_Shift_Del p.M1149Dfs*25 0.21 TCGA-HU-A4G8-01 1 183105532 183105532 C T LAMC1 Missense_Mutation p.R1376C 0.29 deleterious(0.03) probably_damaging(0.912) TCGA-HU-A4G8-01 1 183201921 183201921 C T LAMC2 Missense_Mutation p.R717W 0.27 deleterious(0) benign(0.339) TCGA-HU-A4G8-01 1 184006291 184006291 C T COLGALT2 Silent p.T67T 0.18 TCGA-HU-A4G8-01 1 184672044 184672044 T C EDEM3 Missense_Mutation p.M764V 0.29 tolerated(0.76) benign(0.004) TCGA-HU-A4G8-01 1 185144095 185144095 C A SWT1 Missense_Mutation p.S272R 0.32 tolerated(0.37) benign(0.223) TCGA-HU-A4G8-01 1 186026532 186026532 A G HMCN1 Silent p.S2437S 0.34 TCGA-HU-A4G8-01 1 186088390 186088390 G A HMCN1 Silent p.A3972A 0.18 TCGA-HU-A4G8-01 1 186645761 186645761 G A PTGS2 Missense_Mutation p.R270W 0.36 deleterious(0) possibly_damaging(0.773) TCGA-HU-A4G8-01 1 19062357 19062357 G A PAX7 Missense_Mutation p.G463S 0.31 tolerated_low_confidence(0.37) benign(0.02) TCGA-HU-A4G8-01 1 1961598 1961598 G - GABRD Frame_Shift_Del p.G414Afs*95 0.15 TCGA-HU-A4G8-01 1 197611911 197611911 T C DENND1B Missense_Mutation p.N201S 0.21 deleterious(0) probably_damaging(0.999) TCGA-HU-A4G8-01 1 19992504 19992504 C T HTR6 Silent p.N86N 0.25 TCGA-HU-A4G8-01 1 20005625 20005625 G A HTR6 Missense_Mutation p.G363S 0.17 tolerated(0.35) possibly_damaging(0.899) TCGA-HU-A4G8-01 1 200090068 200090068 G A NR5A2 Missense_Mutation p.V455M 0.25 tolerated(0.11) possibly_damaging(0.786) TCGA-HU-A4G8-01 1 200842856 200842856 C T GPR25 Missense_Mutation p.R231W 0.24 deleterious(0) probably_damaging(0.912) TCGA-HU-A4G8-01 1 200843100 200843100 G A GPR25 Missense_Mutation p.R312H 0.30 tolerated(0.23) benign(0.198) TCGA-HU-A4G8-01 1 200843201 200843201 G A GPR25 Missense_Mutation p.V346M 0.23 tolerated(0.24) benign(0.04) TCGA-HU-A4G8-01 1 201081341 201081341 C T CACNA1S Missense_Mutation p.A43T 0.19 deleterious(0.04) benign(0.126) TCGA-HU-A4G8-01 1 201938668 201938668 C T TIMM17A Nonsense_Mutation p.R168* 0.30 TCGA-HU-A4G8-01 1 202464470 202464470 C T PPP1R12B Missense_Mutation p.T732M 0.23 deleterious(0) benign(0.391) TCGA-HU-A4G8-01 1 202724446 202724446 A G KDM5B Silent p.C497C 0.22 TCGA-HU-A4G8-01 1 202935932 202935932 T C CYB5R1 Missense_Mutation p.Q37R 0.41 tolerated(0.49) benign(0) TCGA-HU-A4G8-01 1 203020964 203020964 G A PPFIA4 Missense_Mutation p.V21M 0.30 deleterious(0.02) benign(0.003) TCGA-HU-A4G8-01 1 204130437 204130437 C T REN Missense_Mutation p.R119H 0.22 deleterious(0.04) benign(0.369) TCGA-HU-A4G8-01 1 204950930 204950930 T C NFASC Missense_Mutation p.M751T 0.17 deleterious(0) possibly_damaging(0.707) TCGA-HU-A4G8-01 1 206230974 206230974 C T AVPR1B Silent p.D369D 0.36 TCGA-HU-A4G8-01 1 206782790 206782790 A G EIF2D Silent p.P90P 0.16 TCGA-HU-A4G8-01 1 207642044 207642044 C - CR2 Frame_Shift_Del p.T209Hfs*10 0.33 TCGA-HU-A4G8-01 1 20879438 20879438 C T FAM43B 5'UTR 0.14 TCGA-HU-A4G8-01 1 21054527 21054527 G A SH2D5 Missense_Mutation p.A4V 0.25 tolerated(0.59) benign(0.016) TCGA-HU-A4G8-01 1 213170497 213170497 C A ANGEL2 Nonsense_Mutation p.G495* 0.22 TCGA-HU-A4G8-01 1 214171309 214171309 G A PROX1 Silent p.T477T 0.21 TCGA-HU-A4G8-01 1 215955497 215955497 G A USH2A Missense_Mutation p.R3543C 0.21 benign(0.006) TCGA-HU-A4G8-01 1 220162105 220162105 T - EPRS Frame_Shift_Del p.T868Lfs*29 0.19 TCGA-HU-A4G8-01 1 220369673 220369673 T C RAB3GAP2 Silent p.A293A 0.25 TCGA-HU-A4G8-01 1 220808733 220808733 T A MARK1 Missense_Mutation p.S380T 0.27 tolerated(0.06) benign(0.006) TCGA-HU-A4G8-01 1 220809209 220809209 C A MARK1 Silent p.T437T 0.23 TCGA-HU-A4G8-01 1 22211332 22211332 A G HSPG2 Missense_Mutation p.C479R 0.11 probably_damaging(0.992) TCGA-HU-A4G8-01 1 22222727 22222727 C T HSPG2 Missense_Mutation p.R47H 0.31 benign(0) TCGA-HU-A4G8-01 1 222835395 222835395 A G MIA3 Intron 0.17 TCGA-HU-A4G8-01 1 225706918 225706918 G A ENAH Missense_Mutation p.R262C 0.26 deleterious_low_confidence(0) unknown(0) TCGA-HU-A4G8-01 1 226032324 226032324 G A EPHX1 Missense_Mutation p.R389Q 0.12 tolerated(0.22) benign(0.016) TCGA-HU-A4G8-01 1 226127655 226127655 C T LEFTY2 Missense_Mutation p.V100M 0.09 tolerated(0.06) probably_damaging(0.989) TCGA-HU-A4G8-01 1 226567625 226567625 T C PARP1 Missense_Mutation p.E514G 0.24 tolerated(0.06) benign(0.199) TCGA-HU-A4G8-01 1 2268277 2268277 G A MORN1 Missense_Mutation p.A350V 0.25 tolerated(0.23) benign(0.014) TCGA-HU-A4G8-01 1 226924660 226924660 G A ITPKB Missense_Mutation p.P167L 0.19 deleterious_low_confidence(0) probably_damaging(0.963) TCGA-HU-A4G8-01 1 226925055 226925055 C T ITPKB Silent p.P35P 0.24 TCGA-HU-A4G8-01 1 227335096 227335096 C T CDC42BPA Silent p.S286S 0.27 TCGA-HU-A4G8-01 1 228112053 228112053 G A WNT9A Missense_Mutation p.T134M 0.21 deleterious(0) probably_damaging(1) TCGA-HU-A4G8-01 1 228294449 228294449 C T MRPL55 3'UTR 0.21 TCGA-HU-A4G8-01 1 228402120 228402120 C T OBSCN Nonsense_Mutation p.Q502* 0.25 TCGA-HU-A4G8-01 1 228461665 228461665 G A OBSCN Missense_Mutation p.V2153M 0.14 probably_damaging(0.967) TCGA-HU-A4G8-01 1 2290120 2290120 G A MORN1 Silent p.G260G 0.26 TCGA-HU-A4G8-01 1 230386205 230386205 C - GALNT2 Frame_Shift_Del p.M305* 0.21 TCGA-HU-A4G8-01 1 230819335 230819335 G T COG2 Silent p.A394A 0.22 TCGA-HU-A4G8-01 1 231298765 231298765 C T TRIM67 Missense_Mutation p.P17L 0.26 deleterious(0) probably_damaging(0.999) TCGA-HU-A4G8-01 1 231906637 231906637 G A DISC1 Silent p.Q485Q 0.22 TCGA-HU-A4G8-01 1 233160952 233160952 G A PCNXL2 Silent p.N1515N 0.26 TCGA-HU-A4G8-01 1 233802541 233802541 C T KCNK1 Missense_Mutation p.L186F 0.28 tolerated(0.17) benign(0.004) TCGA-HU-A4G8-01 1 23418326 23418326 G A LUZP1 Missense_Mutation p.P810L 0.27 tolerated(0.15) benign(0.005) TCGA-HU-A4G8-01 1 234529428 234529428 C T TARBP1 Missense_Mutation p.V1467M 0.25 deleterious(0) probably_damaging(0.992) TCGA-HU-A4G8-01 1 235295057 235295057 G A RBM34 Missense_Mutation p.R422C 0.23 tolerated(0.11) unknown(0) TCGA-HU-A4G8-01 1 235967817 235967817 G A LYST Missense_Mutation p.A1181V 0.22 tolerated(0.13) benign(0.014) TCGA-HU-A4G8-01 1 23637504 23637504 G A HNRNPR Missense_Mutation p.R452W 0.25 tolerated(0.11) unknown(0) TCGA-HU-A4G8-01 1 236700878 236700878 G A LGALS8 Missense_Mutation p.A43T 0.27 deleterious(0) benign(0.435) TCGA-HU-A4G8-01 1 237806708 237806708 G A RYR2 Missense_Mutation p.V2435I 0.22 benign(0.353) TCGA-HU-A4G8-01 1 237865297 237865297 T C RYR2 Silent p.S3129S 0.29 TCGA-HU-A4G8-01 1 238048810 238048810 G A ZP4 Silent p.Y347Y 0.14 TCGA-HU-A4G8-01 1 240255952 240255952 G T FMN2 Silent p.T181T 0.27 TCGA-HU-A4G8-01 1 241799153 241799153 G A CHML 5'UTR 0.41 TCGA-HU-A4G8-01 1 242159566 242159566 C T MAP1LC3C Missense_Mutation p.V115M 0.24 deleterious(0.03) benign(0.393) TCGA-HU-A4G8-01 1 245766056 245766056 G A KIF26B Missense_Mutation p.D510N 0.20 deleterious(0) unknown(0) TCGA-HU-A4G8-01 1 24666189 24666189 G T GRHL3 Missense_Mutation p.E328D 0.21 tolerated(0.11) benign(0.257) TCGA-HU-A4G8-01 1 247076642 247076642 G A AHCTF1 Nonsense_Mutation p.R159* 0.26 TCGA-HU-A4G8-01 1 247588619 247588619 C A NLRP3 Missense_Mutation p.P625H 0.19 tolerated(0.17) probably_damaging(0.997) TCGA-HU-A4G8-01 1 248129532 248129532 T G OR2AK2 Missense_Mutation p.L300R 0.24 deleterious(0) probably_damaging(0.986) TCGA-HU-A4G8-01 1 24995640 24995640 G A SRRM1 Missense_Mutation p.R589H 0.24 unknown(0) TCGA-HU-A4G8-01 1 25944451 25944451 G C MAN1C1 Missense_Mutation p.A55P 0.15 tolerated(0.29) benign(0.002) TCGA-HU-A4G8-01 1 26300985 26300985 C A PAFAH2 Missense_Mutation p.R305S 0.33 deleterious(0) possibly_damaging(0.486) TCGA-HU-A4G8-01 1 26529010 26529010 A - CATSPER4 Frame_Shift_Del p.K467Nfs*78 0.30 TCGA-HU-A4G8-01 1 27105931 27105931 G - ARID1A Frame_Shift_Del p.D1850Tfs*33 0.24 TCGA-HU-A4G8-01 1 28862386 28862386 G A RCC1 Missense_Mutation p.R253Q 0.26 tolerated(0.65) benign(0.006) TCGA-HU-A4G8-01 1 29581830 29581830 C T PTPRU Silent p.C39C 0.35 TCGA-HU-A4G8-01 1 31905967 31905969 CTT - SERINC2 In_Frame_Del p.F400del 0.28 TCGA-HU-A4G8-01 1 32163710 32163710 C T COL16A1 Missense_Mutation p.D152N 0.29 unknown(0) TCGA-HU-A4G8-01 1 3417789 3417789 C T MEGF6 Missense_Mutation p.G800R 0.31 deleterious(0) probably_damaging(0.998) TCGA-HU-A4G8-01 1 36563163 36563164 - G COL8A2 3'UTR 0.20 TCGA-HU-A4G8-01 1 37949169 37949169 C T ZC3H12A Missense_Mutation p.A586V 0.20 tolerated(0.16) benign(0.395) TCGA-HU-A4G8-01 1 38003355 38003355 G A SNIP1 Silent p.D395D 0.28 TCGA-HU-A4G8-01 1 38032473 38032474 - T GNL2 Frame_Shift_Ins p.F727Ifs*? 0.18 TCGA-HU-A4G8-01 1 3807424 3807424 G A C1orf174 Silent p.G109G 0.23 TCGA-HU-A4G8-01 1 38227637 38227637 C T EPHA10 Missense_Mutation p.R97H 0.26 deleterious(0.01) probably_damaging(0.942) TCGA-HU-A4G8-01 1 40546146 40546146 C T PPT1 Missense_Mutation p.E184K 0.20 deleterious(0.04) possibly_damaging(0.706) TCGA-HU-A4G8-01 1 40770189 40770189 C T COL9A2 Missense_Mutation p.E392K 0.37 tolerated(0.08) possibly_damaging(0.635) TCGA-HU-A4G8-01 1 41012528 41012528 A - ZNF684 Frame_Shift_Del p.N180Ifs*83 0.17 TCGA-HU-A4G8-01 1 41481637 41481637 G A SLFNL1 3'UTR 0.26 TCGA-HU-A4G8-01 1 43205546 43205546 C T CLDN19 Silent p.Q63Q 0.27 TCGA-HU-A4G8-01 1 43223475 43223475 G C LEPRE1 Silent p.T353T 0.22 TCGA-HU-A4G8-01 1 43778274 43778274 T C TIE1 Splice_Site p.X643_splice 0.13 TCGA-HU-A4G8-01 1 44433122 44433122 C T IPO13 Missense_Mutation p.R917C 0.39 deleterious(0.01) possibly_damaging(0.772) TCGA-HU-A4G8-01 1 45340387 45340387 T C EIF2B3 Missense_Mutation p.N389D 0.22 tolerated(0.12) benign(0.05) TCGA-HU-A4G8-01 1 46497966 46497966 A C MAST2 Silent p.R1102R 0.26 TCGA-HU-A4G8-01 1 46521525 46521525 T - PIK3R3 Frame_Shift_Del p.M295* 0.25 TCGA-HU-A4G8-01 1 46874199 46874199 G A FAAH Silent p.P340P 0.24 TCGA-HU-A4G8-01 1 46977919 46977919 C T DMBX1 Missense_Mutation p.A296V 0.36 deleterious_low_confidence(0) benign(0.127) TCGA-HU-A4G8-01 1 50661259 50661259 C T ELAVL4 Missense_Mutation p.R196C 0.24 deleterious(0.02) possibly_damaging(0.813) TCGA-HU-A4G8-01 1 52269613 52269613 A G NRD1 Missense_Mutation p.V797A 0.28 deleterious(0.03) benign(0.298) TCGA-HU-A4G8-01 1 52280256 52280256 A T NRD1 Nonsense_Mutation p.L597* 0.24 TCGA-HU-A4G8-01 1 52705024 52705025 - G ZFYVE9 Frame_Shift_Ins p.E647Gfs*7 0.22 TCGA-HU-A4G8-01 1 52825200 52825200 C T CC2D1B Missense_Mutation p.G317S 0.25 tolerated(0.13) benign(0.12) TCGA-HU-A4G8-01 1 54405717 54405717 G A HSPB11 Silent p.S13S 0.16 TCGA-HU-A4G8-01 1 55072844 55072844 G A ACOT11 Missense_Mutation p.A470T 0.19 tolerated(0.64) benign(0.042) TCGA-HU-A4G8-01 1 5965733 5965733 C T NPHP4 Silent p.T574T 0.32 TCGA-HU-A4G8-01 1 6171885 6171885 G A CHD5 Silent p.Y1733Y 0.16 TCGA-HU-A4G8-01 1 65335036 65335036 A G JAK1 Missense_Mutation p.M202T 0.26 deleterious(0.04) benign(0.001) TCGA-HU-A4G8-01 1 65614197 65614197 G A AK4 Missense_Mutation p.S36N 0.40 deleterious(0) benign(0.076) TCGA-HU-A4G8-01 1 65858124 65858124 G A DNAJC6 Silent p.S493S 0.26 TCGA-HU-A4G8-01 1 67648522 67648522 C T IL23R Missense_Mutation p.P124L 0.17 tolerated(0.11) probably_damaging(0.96) TCGA-HU-A4G8-01 1 70385472 70385472 C T LRRC7 Intron 0.25 TCGA-HU-A4G8-01 1 74663944 74663944 T C FPGT 5'UTR 0.25 TCGA-HU-A4G8-01 1 77509992 77509992 G A ST6GALNAC5 Missense_Mutation p.R122H 0.30 probably_damaging(1) TCGA-HU-A4G8-01 1 78183583 78183583 C T USP33 Silent p.L660L 0.19 TCGA-HU-A4G8-01 1 78392424 78392424 A - NEXN Frame_Shift_Del p.E240Nfs*8 0.20 TCGA-HU-A4G8-01 1 78481820 78481820 A - DNAJB4 Frame_Shift_Del p.N303Ifs*9 0.09 TCGA-HU-A4G8-01 1 7887694 7887694 C T PER3 Missense_Mutation p.P894L 0.25 tolerated(0.16) possibly_damaging(0.908) TCGA-HU-A4G8-01 1 89226025 89226025 A G PKN2 Missense_Mutation p.N157S 0.21 deleterious(0) probably_damaging(0.973) TCGA-HU-A4G8-01 1 894619 894619 A G NOC2L Translation_Start_Site p.M1? 0.36 deleterious_low_confidence(0) possibly_damaging(0.663) TCGA-HU-A4G8-01 1 90179228 90179228 A G LRRC8C Missense_Mutation p.K367E 0.21 deleterious(0) benign(0.193) TCGA-HU-A4G8-01 1 9063463 9063463 G A SLC2A7 Missense_Mutation p.R479C 0.26 deleterious(0.03) benign(0.082) TCGA-HU-A4G8-01 1 93599279 93599280 - A MTF2 Frame_Shift_Ins p.G397Rfs*23 0.31 TCGA-HU-A4G8-01 1 93720077 93720077 A - CCDC18 Frame_Shift_Del p.E1138Sfs*3 0.20 TCGA-HU-A4G8-01 1 94667313 94667313 C T ARHGAP29 Missense_Mutation p.R415Q 0.20 tolerated(0.26) benign(0.029) TCGA-HU-A4G8-01 1 99470286 99470286 C A LPPR5 5'UTR 0.50 TCGA-HU-A4G8-01 20 1294128 1294128 G A SDCBP2 Silent p.G80G 0.24 TCGA-HU-A4G8-01 20 17434430 17434430 A G PCSK2 Missense_Mutation p.D310G 0.27 deleterious(0) probably_damaging(1) TCGA-HU-A4G8-01 20 17937628 17937628 T C SNX5 Missense_Mutation p.I35M 0.28 deleterious(0) probably_damaging(0.948) TCGA-HU-A4G8-01 20 21492919 21492919 G A NKX2-2 Missense_Mutation p.A155V 0.22 deleterious(0) probably_damaging(0.939) TCGA-HU-A4G8-01 20 21492938 21492938 G A NKX2-2 Nonsense_Mutation p.Q149* 0.28 TCGA-HU-A4G8-01 20 2637470 2637470 C T NOP56 Nonsense_Mutation p.R404* 0.26 TCGA-HU-A4G8-01 20 30381659 30381659 C T TPX2 Silent p.D506D 0.20 TCGA-HU-A4G8-01 20 30602812 30602812 C - CCM2L Frame_Shift_Del p.D48Tfs*27 0.22 TCGA-HU-A4G8-01 20 3065237 3065237 G A AVP Silent p.G28G 0.21 TCGA-HU-A4G8-01 20 30689165 30689165 G A HCK Missense_Mutation p.R475Q 0.19 deleterious(0) probably_damaging(0.957) TCGA-HU-A4G8-01 20 31375119 31375119 C T DNMT3B Silent p.D172D 0.20 TCGA-HU-A4G8-01 20 33095507 33095507 C T ITCH Missense_Mutation p.R874C 0.29 deleterious(0) probably_damaging(1) TCGA-HU-A4G8-01 20 33588098 33588098 G A MYH7B Missense_Mutation p.R1637H 0.28 possibly_damaging(0.756) TCGA-HU-A4G8-01 20 33703692 33703692 C T EDEM2 Silent p.S427S 0.27 TCGA-HU-A4G8-01 20 34144821 34144821 C T ERGIC3 Silent p.P324P 0.23 TCGA-HU-A4G8-01 20 34797802 34797802 G A EPB41L1 Silent p.P687P 0.15 TCGA-HU-A4G8-01 20 34832791 34832791 C T AAR2 Silent p.P310P 0.35 TCGA-HU-A4G8-01 20 3565317 3565317 A G ATRN Missense_Mutation p.T992A 0.21 deleterious(0) probably_damaging(0.998) TCGA-HU-A4G8-01 20 36149634 36149634 G A NNAT 5'UTR 0.25 TCGA-HU-A4G8-01 20 36572486 36572486 A G VSTM2L Missense_Mutation p.D149G 0.33 tolerated(0.26) benign(0.078) TCGA-HU-A4G8-01 20 36851953 36851953 G - KIAA1755 Frame_Shift_Del p.P752Lfs*11 0.17 TCGA-HU-A4G8-01 20 37353748 37353748 C T SLC32A1 Silent p.N127N 0.22 TCGA-HU-A4G8-01 20 39792806 39792806 G A PLCG1 Silent p.L394L 0.23 TCGA-HU-A4G8-01 20 40050403 40050403 C A CHD6 Missense_Mutation p.Q1624H 0.23 tolerated(0.17) benign(0.014) TCGA-HU-A4G8-01 20 41408898 41408898 G A PTPRT Silent p.Y176Y 0.21 TCGA-HU-A4G8-01 20 42328684 42328684 G A MYBL2 Silent p.S317S 0.25 TCGA-HU-A4G8-01 20 42789004 42789004 G A JPH2 Silent p.Y141Y 0.29 TCGA-HU-A4G8-01 20 42825820 42825820 G T OSER1 Silent p.R251R 0.24 TCGA-HU-A4G8-01 20 43530233 43530233 G A YWHAB Missense_Mutation p.R20Q 0.22 deleterious_low_confidence(0.01) benign(0.031) TCGA-HU-A4G8-01 20 43727032 43727032 G A KCNS1 Silent p.D127D 0.36 TCGA-HU-A4G8-01 20 44351102 44351102 G A SPINT4 Silent p.K32K 0.12 TCGA-HU-A4G8-01 20 44469499 44469499 G A SNX21 Silent p.L223L 0.29 TCGA-HU-A4G8-01 20 44486304 44486304 T C ZSWIM3 5'UTR 0.18 TCGA-HU-A4G8-01 20 45003058 45003058 G A ELMO2 Missense_Mutation p.R398W 0.21 deleterious(0) probably_damaging(0.997) TCGA-HU-A4G8-01 20 45874842 45874842 C T ZMYND8 Missense_Mutation p.E732K 0.31 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-HU-A4G8-01 20 46305272 46305272 G A SULF2 Missense_Mutation p.A449V 0.43 deleterious(0.02) probably_damaging(0.925) TCGA-HU-A4G8-01 20 48500458 48500458 G A SLC9A8 Missense_Mutation p.G465D 0.25 deleterious(0.01) possibly_damaging(0.583) TCGA-HU-A4G8-01 20 49621005 49621005 G A KCNG1 Silent p.R371R 0.33 TCGA-HU-A4G8-01 20 49626389 49626389 C T KCNG1 Missense_Mutation p.G163S 0.13 tolerated(0.51) benign(0.443) TCGA-HU-A4G8-01 20 50051780 50051780 G A NFATC2 Silent p.Y659Y 0.28 TCGA-HU-A4G8-01 20 55033576 55033576 G T CASS4 Missense_Mutation p.V712L 0.30 deleterious(0) possibly_damaging(0.841) TCGA-HU-A4G8-01 20 5550861 5550861 C T GPCPD1 Missense_Mutation p.V361I 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-HU-A4G8-01 20 57484420 57484420 C T GNAS Missense_Mutation p.R844C 0.28 deleterious(0.01) probably_damaging(1) TCGA-HU-A4G8-01 20 57767196 57767196 G - ZNF831 Frame_Shift_Del p.E376Rfs*158 0.21 TCGA-HU-A4G8-01 20 6077604 6077604 G A FERMT1 Missense_Mutation p.A345V 0.29 deleterious(0.05) possibly_damaging(0.901) TCGA-HU-A4G8-01 20 61443913 61443913 C A OGFR Missense_Mutation p.P316T 0.47 deleterious(0.04) benign(0.1) TCGA-HU-A4G8-01 20 61835025 61835025 G A YTHDF1 Silent p.Y89Y 0.29 TCGA-HU-A4G8-01 20 62192526 62192526 A G HELZ2 Missense_Mutation p.L2352P 0.23 deleterious(0) probably_damaging(0.998) TCGA-HU-A4G8-01 20 62195546 62195546 G A HELZ2 Silent p.S1543S 0.38 TCGA-HU-A4G8-01 20 62559718 62559718 G A DNAJC5 Missense_Mutation p.R7H 0.28 deleterious(0.01) probably_damaging(0.968) TCGA-HU-A4G8-01 20 6758962 6758962 C - BMP2 Frame_Shift_Del p.T141Rfs*21 0.12 TCGA-HU-A4G8-01 20 77128 77128 C T DEFB125 3'UTR 0.42 TCGA-HU-A4G8-01 21 28216636 28216636 G A ADAMTS1 Missense_Mutation p.T213I 0.29 tolerated(0.19) benign(0) TCGA-HU-A4G8-01 21 30353447 30353447 T C LTN1 Silent p.V314V 0.29 TCGA-HU-A4G8-01 21 34399432 34399432 T G OLIG2 Missense_Mutation p.S88A 0.42 tolerated(0.34) benign(0.003) TCGA-HU-A4G8-01 21 37653908 37653908 A G DOPEY2 Silent p.Q2053Q 0.33 TCGA-HU-A4G8-01 21 38098537 38098537 G A SIM2 Missense_Mutation p.A221T 0.34 tolerated(0.16) possibly_damaging(0.596) TCGA-HU-A4G8-01 21 43803162 43803162 A G TMPRSS3 Silent p.T254T 0.19 TCGA-HU-A4G8-01 21 43857603 43857603 G A UBASH3A Missense_Mutation p.A467T 0.27 deleterious(0) possibly_damaging(0.86) TCGA-HU-A4G8-01 21 44513132 44513132 A T U2AF1 3'UTR 0.31 TCGA-HU-A4G8-01 21 44841868 44841868 T - SIK1 Frame_Shift_Del p.N108Mfs*8 0.31 TCGA-HU-A4G8-01 21 45810896 45810896 G C TRPM2 Missense_Mutation p.E476D 0.29 tolerated(0.42) benign(0.014) TCGA-HU-A4G8-01 21 46066846 46066846 T C KRTAP10-11 Silent p.C157C 0.34 TCGA-HU-A4G8-01 21 46951771 46951771 G A SLC19A1 Silent p.L161L 0.33 TCGA-HU-A4G8-01 21 47423058 47423059 - C COL6A1 Frame_Shift_Ins p.I822Hfs*8 0.20 TCGA-HU-A4G8-01 21 47571484 47571484 G A FTCD Silent p.R208R 0.38 TCGA-HU-A4G8-01 21 47635602 47635602 A G LSS Missense_Mutation p.Y297H 0.29 tolerated(0.3) probably_damaging(0.916) TCGA-HU-A4G8-01 21 47831877 47831877 G A PCNT Missense_Mutation p.A1964T 0.32 benign(0.005) TCGA-HU-A4G8-01 22 18274009 18274011 CTC - MICAL3 In_Frame_Del p.E1903del 0.22 TCGA-HU-A4G8-01 22 20230572 20230572 T G RTN4R Silent p.P28P 0.22 TCGA-HU-A4G8-01 22 21345966 21345966 C A LZTR1 Missense_Mutation p.P281T 0.29 deleterious(0) probably_damaging(1) TCGA-HU-A4G8-01 22 21363780 21363780 G C AC002472.1 5'Flank 0.24 TCGA-HU-A4G8-01 22 21385709 21385709 G A SLC7A4 Silent p.A131A 0.13 TCGA-HU-A4G8-01 22 22599374 22599374 G A VPREB1 Silent p.P21P 0.29 TCGA-HU-A4G8-01 22 25294157 25294157 G A SGSM1 Silent p.T802T 0.32 TCGA-HU-A4G8-01 22 25597378 25597378 C T CRYBB3 Silent p.H5H 0.21 TCGA-HU-A4G8-01 22 26875305 26875306 - A HPS4 Frame_Shift_Ins p.L20Sfs*3 0.21 TCGA-HU-A4G8-01 22 29446260 29446260 C T ZNRF3 Silent p.L697L 0.12 TCGA-HU-A4G8-01 22 29533623 29533623 C T KREMEN1 Missense_Mutation p.R309C 0.20 deleterious(0.01) probably_damaging(0.921) TCGA-HU-A4G8-01 22 29693934 29693934 G A EWSR1 Missense_Mutation p.R476H 0.21 tolerated(0.55) unknown(0) TCGA-HU-A4G8-01 22 29752428 29752428 G A AP1B1 Missense_Mutation p.R235C 0.32 deleterious(0) probably_damaging(0.919) TCGA-HU-A4G8-01 22 30185160 30185160 T C ASCC2 Missense_Mutation p.S706G 0.24 tolerated(0.26) benign(0.003) TCGA-HU-A4G8-01 22 31011717 31011717 G A TCN2 Missense_Mutation p.V295I 0.19 tolerated(0.13) benign(0.365) TCGA-HU-A4G8-01 22 31663021 31663021 T C LIMK2 Missense_Mutation p.C344R 0.40 tolerated(0.23) possibly_damaging(0.884) TCGA-HU-A4G8-01 22 31674448 31674448 G - LIMK2 3'Flank 0.23 TCGA-HU-A4G8-01 22 32108375 32108375 A G PRR14L Missense_Mutation p.V1817A 0.56 deleterious(0.03) possibly_damaging(0.561) TCGA-HU-A4G8-01 22 33700401 33700401 C T LARGE Missense_Mutation p.R515H 0.25 tolerated(0.22) probably_damaging(1) TCGA-HU-A4G8-01 22 36624004 36624004 C T APOL2 Missense_Mutation p.G154S 0.16 deleterious(0.01) possibly_damaging(0.85) TCGA-HU-A4G8-01 22 36678790 36678790 C T MYH9 Missense_Mutation p.R1936Q 0.25 possibly_damaging(0.536) TCGA-HU-A4G8-01 22 37499331 37499331 G A TMPRSS6 Missense_Mutation p.R52C 0.23 tolerated(0.19) benign(0.003) TCGA-HU-A4G8-01 22 38221250 38221250 G A GALR3 Missense_Mutation p.A294T 0.41 deleterious(0) possibly_damaging(0.534) TCGA-HU-A4G8-01 22 38352793 38352793 G A POLR2F Missense_Mutation p.D12N 0.31 tolerated(0.11) unknown(0) TCGA-HU-A4G8-01 22 39380103 39380103 G A APOBEC3B Missense_Mutation p.R14Q 0.44 tolerated(0.27) benign(0.001) TCGA-HU-A4G8-01 22 39884756 39884756 G A MGAT3 Silent p.T468T 0.30 TCGA-HU-A4G8-01 22 40417954 40417954 T C FAM83F Silent p.S480S 0.18 TCGA-HU-A4G8-01 22 40814976 40814976 A G MKL1 Missense_Mutation p.L489P 0.18 deleterious(0.03) probably_damaging(0.991) TCGA-HU-A4G8-01 22 42195331 42195334 GAGA - MEI1 3'UTR 0.18 TCGA-HU-A4G8-01 22 42537242 42537242 G A NDUFA6-AS1 3'Flank 0.27 TCGA-HU-A4G8-01 22 44237735 44237735 C T SULT4A1 Missense_Mutation p.D83N 0.27 deleterious(0.01) benign(0.348) TCGA-HU-A4G8-01 22 45221431 45221431 G A ARHGAP8 Missense_Mutation p.R307Q 0.33 tolerated(0.08) benign(0.072) TCGA-HU-A4G8-01 22 45571860 45571860 C T NUP50 Missense_Mutation p.A80V 0.23 tolerated(0.38) benign(0.013) TCGA-HU-A4G8-01 22 46859644 46859644 G A CELSR1 Silent p.R1381R 0.12 TCGA-HU-A4G8-01 22 50657780 50657780 A G TUBGCP6 Missense_Mutation p.L1474P 0.42 deleterious(0.01) probably_damaging(1) TCGA-HU-A4G8-01 22 50900134 50900134 C T SBF1 Missense_Mutation p.R886Q 0.24 tolerated(0.2) benign(0.104) TCGA-HU-A4G8-01 22 50942064 50942064 C T LMF2 Missense_Mutation p.R627H 0.42 deleterious(0) probably_damaging(0.996) TCGA-HU-A4G8-01 22 50967735 50967735 T C TYMP Missense_Mutation p.M83V 0.20 deleterious(0) possibly_damaging(0.899) TCGA-HU-A4G8-01 22 50967741 50967741 G A TYMP Missense_Mutation p.R81W 0.21 deleterious(0) probably_damaging(0.913) TCGA-HU-A4G8-01 22 51012061 51012061 C T CPT1B Missense_Mutation p.A352T 0.27 deleterious(0.02) benign(0) TCGA-HU-A4G8-01 2 103324619 103324619 G A SLC9A2 Missense_Mutation p.V704M 0.22 tolerated(0.27) benign(0.049) TCGA-HU-A4G8-01 2 105858638 105858638 G A GPR45 Missense_Mutation p.R108H 0.24 deleterious(0.02) benign(0.033) TCGA-HU-A4G8-01 2 105915130 105915130 G A TGFBRAP1 Missense_Mutation p.R241C 0.23 deleterious(0) probably_damaging(0.995) TCGA-HU-A4G8-01 2 106729102 106729102 C T UXS1 Silent p.T293T 0.12 TCGA-HU-A4G8-01 2 109380652 109380652 A - RANBP2 Frame_Shift_Del p.I1221Yfs*2 0.15 TCGA-HU-A4G8-01 2 109524435 109524435 G A EDAR Missense_Mutation p.R282W 0.29 deleterious(0) benign(0.004) TCGA-HU-A4G8-01 2 109527333 109527333 C T EDAR Intron 0.23 TCGA-HU-A4G8-01 2 110015266 110015266 A G SH3RF3 Missense_Mutation p.H389R 0.26 deleterious(0.04) possibly_damaging(0.601) TCGA-HU-A4G8-01 2 114256835 114256835 T C FOXD4L1 Translation_Start_Site p.M1? 0.20 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-HU-A4G8-01 2 120776745 120776745 G A EPB41L5 Missense_Mutation p.A29T 0.27 deleterious(0.02) probably_damaging(0.963) TCGA-HU-A4G8-01 2 121104098 121104098 G A INHBB Missense_Mutation p.A112T 0.25 tolerated(0.06) possibly_damaging(0.878) TCGA-HU-A4G8-01 2 128347770 128347770 G A MYO7B Missense_Mutation p.R653H 0.25 deleterious(0) probably_damaging(0.961) TCGA-HU-A4G8-01 2 128389313 128389313 C T MYO7B Missense_Mutation p.T1719M 0.26 deleterious(0) probably_damaging(1) TCGA-HU-A4G8-01 2 128479496 128479496 T C WDR33 Missense_Mutation p.I529V 0.28 tolerated_low_confidence(0.28) unknown(0) TCGA-HU-A4G8-01 2 128699612 128699613 - T SAP130 Frame_Shift_Ins p.V1074Sfs*26 0.20 TCGA-HU-A4G8-01 2 128750820 128750820 A G SAP130 Missense_Mutation p.L499P 0.20 deleterious_low_confidence(0.03) probably_damaging(0.996) TCGA-HU-A4G8-01 2 130898808 130898808 C A CCDC74B Missense_Mutation p.Q202H 0.16 deleterious(0.03) benign(0.023) TCGA-HU-A4G8-01 2 132237756 132237756 A G TUBA3D Missense_Mutation p.K164E 0.25 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-HU-A4G8-01 2 133174763 133174763 G A GPR39 Missense_Mutation p.A50T 0.17 deleterious(0) benign(0.004) TCGA-HU-A4G8-01 2 136481617 136481617 C T R3HDM1 Missense_Mutation p.R1019W 0.25 deleterious(0) possibly_damaging(0.855) TCGA-HU-A4G8-01 2 139316720 139316720 T - SPOPL Frame_Shift_Del p.F205Sfs*2 0.22 TCGA-HU-A4G8-01 2 1426892 1426892 C T TPO Missense_Mutation p.T57M 0.18 deleterious(0) possibly_damaging(0.886) TCGA-HU-A4G8-01 2 144461010 144461010 A G ARHGAP15 Silent p.R387R 0.19 TCGA-HU-A4G8-01 2 153483215 153483215 T C FMNL2 Silent p.A713A 0.16 TCGA-HU-A4G8-01 2 154334877 154334877 G A RPRM Missense_Mutation p.T68I 0.29 deleterious(0) probably_damaging(0.934) TCGA-HU-A4G8-01 2 155555952 155555952 A G KCNJ3 Missense_Mutation p.H222R 0.16 deleterious(0) probably_damaging(0.999) TCGA-HU-A4G8-01 2 15742747 15742747 T C DDX1 Missense_Mutation p.L128S 0.23 deleterious(0) benign(0.143) TCGA-HU-A4G8-01 2 158980286 158980286 G A UPP2 Silent p.L287L 0.20 TCGA-HU-A4G8-01 2 159077217 159077217 T - CCDC148 Frame_Shift_Del p.K420Nfs*15 0.29 TCGA-HU-A4G8-01 2 164468132 164468132 T - FIGN Frame_Shift_Del p.K70Nfs*29 0.17 TCGA-HU-A4G8-01 2 166859078 166859078 G A SCN1A Silent p.C1396C 0.22 TCGA-HU-A4G8-01 2 168103737 168103737 A - XIRP2 Frame_Shift_Del p.D1948Mfs*5 0.23 TCGA-HU-A4G8-01 2 170127418 170127418 G C LRP2 Silent p.G772G 0.28 TCGA-HU-A4G8-01 2 172823000 172823000 T C HAT1 Missense_Mutation p.Y228H 0.25 deleterious(0) probably_damaging(0.996) TCGA-HU-A4G8-01 2 173344453 173344453 G A ITGA6 Silent p.A491A 0.23 TCGA-HU-A4G8-01 2 177053951 177053951 C T HOXD1 Missense_Mutation p.S141L 0.22 deleterious(0) probably_damaging(0.992) TCGA-HU-A4G8-01 2 178494158 178494158 C T PDE11A Missense_Mutation p.V927I 0.26 tolerated_low_confidence(0.37) unknown(0) TCGA-HU-A4G8-01 2 179401890 179401890 C T TTN Missense_Mutation p.A33316T 0.13 TCGA-HU-A4G8-01 2 179431363 179431364 GT - TTN Frame_Shift_Del p.T26499Hfs*2 0.20 TCGA-HU-A4G8-01 2 179433099 179433099 G A TTN Silent p.G25920G 0.26 TCGA-HU-A4G8-01 2 179455353 179455353 G A TTN Missense_Mutation p.R20367W 0.27 TCGA-HU-A4G8-01 2 179463995 179463995 C T TTN Missense_Mutation p.C18842Y 0.27 TCGA-HU-A4G8-01 2 179479340 179479340 G A TTN Nonsense_Mutation p.Q16301* 0.43 TCGA-HU-A4G8-01 2 179986541 179986541 G A SESTD1 Silent p.D466D 0.22 TCGA-HU-A4G8-01 2 182543335 182543335 C T NEUROD1 Missense_Mutation p.G85S 0.12 deleterious(0.01) probably_damaging(0.997) TCGA-HU-A4G8-01 2 183616508 183616508 C T DNAJC10 Missense_Mutation p.A477V 0.09 deleterious(0) probably_damaging(0.933) TCGA-HU-A4G8-01 2 183826904 183826904 A G NCKAP1 Missense_Mutation p.C628R 0.20 tolerated(0.58) benign(0.002) TCGA-HU-A4G8-01 2 184025805 184025805 A - NUP35 Frame_Shift_Del p.D312Mfs*26 0.35 TCGA-HU-A4G8-01 2 186671387 186671387 A G FSIP2 Missense_Mutation p.K5874R 0.14 benign(0.376) TCGA-HU-A4G8-01 2 186672784 186672784 A G FSIP2 Missense_Mutation p.N6340D 0.22 benign(0.374) TCGA-HU-A4G8-01 2 189599261 189599261 A - DIRC1 3'UTR 0.17 TCGA-HU-A4G8-01 2 189907948 189907948 C T COL5A2 Missense_Mutation p.G1134R 0.22 unknown(0) TCGA-HU-A4G8-01 2 190592776 190592776 G A ANKAR Missense_Mutation p.A944T 0.30 tolerated(0.17) benign(0.131) TCGA-HU-A4G8-01 2 191898350 191898350 T C STAT4 Missense_Mutation p.Y573C 0.38 tolerated(0.27) benign(0.044) TCGA-HU-A4G8-01 2 197594735 197594735 C T CCDC150 Nonsense_Mutation p.Q959* 0.44 TCGA-HU-A4G8-01 2 201685956 201685956 G A BZW1 Missense_Mutation p.V418I 0.35 tolerated(0.34) benign(0.016) TCGA-HU-A4G8-01 2 20200211 20200211 T - MATN3 Frame_Shift_Del p.T387Hfs*10 0.16 TCGA-HU-A4G8-01 2 202151290 202151290 A - CASP8 Frame_Shift_Del p.K532Nfs*73 0.24 TCGA-HU-A4G8-01 2 202589068 202589068 C T ALS2 Silent p.Q1154Q 0.32 TCGA-HU-A4G8-01 2 203242243 203242243 T C BMPR2 Missense_Mutation p.W16R 0.25 deleterious(0) benign(0.035) TCGA-HU-A4G8-01 2 20402369 20402369 A C SDC1 3'UTR 0.25 TCGA-HU-A4G8-01 2 207174279 207174279 C T ZDBF2 Missense_Mutation p.T1676M 0.29 tolerated(0.24) benign(0.074) TCGA-HU-A4G8-01 2 20840730 20840730 T C HS1BP3 Intron 0.31 TCGA-HU-A4G8-01 2 20870996 20870996 G A GDF7 Silent p.S388S 0.17 TCGA-HU-A4G8-01 2 210574801 210574802 - A MAP2 Frame_Shift_Ins p.S1634Vfs*8 0.31 TCGA-HU-A4G8-01 2 216240092 216240092 C T FN1 Missense_Mutation p.R2001H 0.24 tolerated(0.26) benign(0.005) TCGA-HU-A4G8-01 2 216288950 216288950 G A FN1 Nonsense_Mutation p.R379* 0.31 TCGA-HU-A4G8-01 2 219114643 219114643 A G ARPC2 Missense_Mutation p.T293A 0.32 deleterious(0.01) benign(0.118) TCGA-HU-A4G8-01 2 219920027 219920027 C T IHH Missense_Mutation p.G380S 0.19 deleterious(0.01) probably_damaging(1) TCGA-HU-A4G8-01 2 220111418 220111418 T C STK16 Silent p.D42D 0.22 TCGA-HU-A4G8-01 2 220432517 220432517 C A OBSL1 Missense_Mutation p.G486V 0.21 deleterious(0.03) possibly_damaging(0.566) TCGA-HU-A4G8-01 2 227872902 227872902 C T COL4A4 Silent p.A1547A 0.13 TCGA-HU-A4G8-01 2 230377497 230377497 A T DNER Splice_Site p.X383_splice 0.20 TCGA-HU-A4G8-01 2 232597710 232597710 G A PDE6D Silent p.D135D 0.28 TCGA-HU-A4G8-01 2 233244553 233244553 C T ALPP Silent p.R188R 0.27 TCGA-HU-A4G8-01 2 233351376 233351376 G A ECEL1 5'UTR 0.29 TCGA-HU-A4G8-01 2 234436178 234436178 G T USP40 Missense_Mutation p.L545M 0.23 deleterious(0.04) benign(0.382) TCGA-HU-A4G8-01 2 234749733 234749733 G A HJURP Missense_Mutation p.P565S 0.24 deleterious(0.01) possibly_damaging(0.724) TCGA-HU-A4G8-01 2 236649677 236649677 C - AGAP1 Frame_Shift_Del p.P129Rfs*22 0.18 TCGA-HU-A4G8-01 2 238002771 238002771 G A COPS8 Missense_Mutation p.A124T 0.15 deleterious(0.04) probably_damaging(0.941) TCGA-HU-A4G8-01 2 239009114 239009114 G T ESPNL Missense_Mutation p.L18F 0.18 deleterious(0) probably_damaging(1) TCGA-HU-A4G8-01 2 241401687 241401687 G A GPC1 Silent p.T135T 0.32 TCGA-HU-A4G8-01 2 241622122 241622122 C T AQP12B Missense_Mutation p.V45M 0.23 tolerated(0.12) benign(0.253) TCGA-HU-A4G8-01 2 24244793 24244793 T C MFSD2B Missense_Mutation p.Y283H 0.24 deleterious(0.01) benign(0.424) TCGA-HU-A4G8-01 2 24344166 24344166 G A PFN4 Missense_Mutation p.T41M 0.18 tolerated(0.26) benign(0.008) TCGA-HU-A4G8-01 2 25141477 25141477 T - ADCY3 Frame_Shift_Del p.K127Rfs*21 0.14 TCGA-HU-A4G8-01 2 25469151 25469151 T C DNMT3A Missense_Mutation p.Y436C 0.26 tolerated(0.15) probably_damaging(0.969) TCGA-HU-A4G8-01 2 26203373 26203374 - CTC KIF3C In_Frame_Ins p.E471dup 0.18 TCGA-HU-A4G8-01 2 27324215 27324216 - C CGREF1 Frame_Shift_Ins p.E295Gfs*6 0.19 TCGA-HU-A4G8-01 2 27456982 27456982 C - CAD Frame_Shift_Del p.P1171Hfs*40 0.28 TCGA-HU-A4G8-01 2 27460632 27460632 C T CAD Missense_Mutation p.A1537V 0.28 deleterious(0.01) possibly_damaging(0.897) TCGA-HU-A4G8-01 2 27528594 27528594 G A TRIM54 Missense_Mutation p.R293H 0.38 tolerated(0.1) probably_damaging(0.983) TCGA-HU-A4G8-01 2 27591536 27591536 T - EIF2B4 Frame_Shift_Del p.K181Nfs*32 0.21 TCGA-HU-A4G8-01 2 27601859 27601859 C T ZNF513 Missense_Mutation p.G92S 0.24 tolerated(0.4) possibly_damaging(0.862) TCGA-HU-A4G8-01 2 277054 277054 A - ACP1 Frame_Shift_Del p.K124Nfs*61 0.23 TCGA-HU-A4G8-01 2 28248273 28248273 A - BRE Frame_Shift_Del p.N163Tfs*13 0.25 TCGA-HU-A4G8-01 2 29404553 29404553 G T CLIP4 Missense_Mutation p.G638C 0.23 deleterious(0.02) benign(0.108) TCGA-HU-A4G8-01 2 31215801 31215801 G A GALNT14 Intron 0.19 TCGA-HU-A4G8-01 2 3595577 3595577 T C RNASEH1 Missense_Mutation p.N240D 0.25 deleterious(0) probably_damaging(0.986) TCGA-HU-A4G8-01 2 37076751 37076751 G A STRN Missense_Mutation p.R731C 0.23 deleterious(0) probably_damaging(0.998) TCGA-HU-A4G8-01 2 37455664 37455664 C T CEBPZ Silent p.T224T 0.25 TCGA-HU-A4G8-01 2 38302370 38302370 C T CYP1B1 Silent p.P54P 0.30 TCGA-HU-A4G8-01 2 43927482 43927482 A C PLEKHH2 Missense_Mutation p.Q462P 0.27 tolerated(0.21) benign(0.018) TCGA-HU-A4G8-01 2 43969914 43969914 C T PLEKHH2 Missense_Mutation p.R1086C 0.34 deleterious(0) probably_damaging(0.998) TCGA-HU-A4G8-01 2 44428897 44428897 G A PPM1B Missense_Mutation p.V187M 0.32 deleterious(0) probably_damaging(1) TCGA-HU-A4G8-01 2 44445212 44445212 T - PPM1B Frame_Shift_Del p.G358Afs*13 0.17 TCGA-HU-A4G8-01 2 45169584 45169584 C T SIX3 Missense_Mutation p.S114L 0.27 deleterious(0.01) probably_damaging(0.941) TCGA-HU-A4G8-01 2 45236175 45236175 G A SIX2 Silent p.G25G 0.17 TCGA-HU-A4G8-01 2 47251494 47251494 G A TTC7A Missense_Mutation p.R546Q 0.26 deleterious(0) probably_damaging(1) TCGA-HU-A4G8-01 2 55489457 55489457 T - MTIF2 Frame_Shift_Del p.N109Tfs*10 0.23 TCGA-HU-A4G8-01 2 55561313 55561313 G A CCDC88A Missense_Mutation p.R882C 0.12 deleterious(0) probably_damaging(0.999) TCGA-HU-A4G8-01 2 61147771 61147771 A - REL Frame_Shift_Del p.E363Nfs*11 0.25 TCGA-HU-A4G8-01 2 61468760 61468760 G A USP34 Missense_Mutation p.R2238C 0.30 deleterious(0.01) possibly_damaging(0.794) TCGA-HU-A4G8-01 2 61729421 61729421 A T XPO1 Missense_Mutation p.L109H 0.13 deleterious(0.03) probably_damaging(0.99) TCGA-HU-A4G8-01 2 70910899 70910899 C T ADD2 Missense_Mutation p.V317M 0.15 deleterious(0.03) probably_damaging(0.978) TCGA-HU-A4G8-01 2 71043874 71043874 G A CLEC4F Silent p.H213H 0.21 TCGA-HU-A4G8-01 2 71909699 71909699 C A DYSF Nonsense_Mutation p.Y2071* 0.29 TCGA-HU-A4G8-01 2 72968532 72968532 G A EXOC6B Silent p.H60H 0.26 TCGA-HU-A4G8-01 2 73994312 73994312 C T DUSP11 Missense_Mutation p.V220M 0.18 tolerated(1) benign(0.003) TCGA-HU-A4G8-01 2 74143722 74143722 G A ACTG2 Missense_Mutation p.A273T 0.25 tolerated_low_confidence(0.28) benign(0.025) TCGA-HU-A4G8-01 2 74708466 74708466 C - CCDC142 Frame_Shift_Del p.G381Vfs*70 0.20 TCGA-HU-A4G8-01 2 75116583 75116583 A G HK2 Missense_Mutation p.T863A 0.25 tolerated(0.07) benign(0.235) TCGA-HU-A4G8-01 2 85848673 85848673 C T USP39 Missense_Mutation p.A135V 0.27 deleterious(0.05) probably_damaging(0.997) TCGA-HU-A4G8-01 2 8822333 8822333 A G ID2 Missense_Mutation p.N13S 0.22 tolerated(0.77) benign(0) TCGA-HU-A4G8-01 2 8891707 8891707 T C KIDINS220 Missense_Mutation p.N1027D 0.24 tolerated(0.12) benign(0.15) TCGA-HU-A4G8-01 2 89544295 89544295 A G IGKV2-30 Missense_Mutation p.V110A 0.22 deleterious(0.03) benign(0.18) TCGA-HU-A4G8-01 2 90193416 90193416 A G IGKV1D-13 Missense_Mutation p.N115D 0.15 tolerated(0.08) benign(0.002) TCGA-HU-A4G8-01 2 95943229 95943229 T C PROM2 Missense_Mutation p.L297P 0.25 deleterious(0) probably_damaging(0.981) TCGA-HU-A4G8-01 2 96076670 96076670 G A FAHD2A Missense_Mutation p.R194H 0.27 deleterious(0.02) probably_damaging(0.989) TCGA-HU-A4G8-01 2 96657309 96657309 A C ANKRD36C Missense_Mutation p.F50V 0.36 tolerated(0.13) benign(0.015) TCGA-HU-A4G8-01 2 99439884 99439884 G A KIAA1211L Silent p.D284D 0.26 TCGA-HU-A4G8-01 3 10050174 10050174 G - AC022007.5 RNA 0.22 TCGA-HU-A4G8-01 3 100962449 100962449 T C IMPG2 Missense_Mutation p.N909S 0.37 deleterious(0) probably_damaging(1) TCGA-HU-A4G8-01 3 10138154 10138154 C T FANCD2 Nonsense_Mutation p.Q1395* 0.20 TCGA-HU-A4G8-01 3 109028155 109028155 C T DPPA2 Silent p.E68E 0.21 TCGA-HU-A4G8-01 3 109128860 109128860 C T RP11-702L6.4 RNA 0.23 TCGA-HU-A4G8-01 3 112666723 112666723 C A CD200R1 Missense_Mutation p.S39I 0.14 tolerated(0.18) benign(0.012) TCGA-HU-A4G8-01 3 113750520 113750520 T - KIAA1407 Frame_Shift_Del p.R309Gfs*3 0.16 TCGA-HU-A4G8-01 3 114058003 114058003 G - ZBTB20 Frame_Shift_Del p.P692Lfs*43 0.36 TCGA-HU-A4G8-01 3 114070632 114070632 C T ZBTB20 Missense_Mutation p.R98H 0.23 deleterious(0) probably_damaging(0.991) TCGA-HU-A4G8-01 3 11851061 11851061 T C TAMM41 Silent p.K268K 0.25 TCGA-HU-A4G8-01 3 119153647 119153647 C T TMEM39A Missense_Mutation p.V399M 0.19 deleterious(0) possibly_damaging(0.882) TCGA-HU-A4G8-01 3 119899986 119899986 T C GPR156 Missense_Mutation p.I307V 0.30 tolerated(0.25) benign(0.057) TCGA-HU-A4G8-01 3 123046536 123046536 C T ADCY5 Missense_Mutation p.G626S 0.21 deleterious(0) probably_damaging(0.984) TCGA-HU-A4G8-01 3 126224606 126224606 C T UROC1 Missense_Mutation p.G251R 0.22 deleterious(0.01) probably_damaging(1) TCGA-HU-A4G8-01 3 126733160 126733160 C T PLXNA1 Missense_Mutation p.A849V 0.27 tolerated(0.4) benign(0.004) TCGA-HU-A4G8-01 3 126749123 126749123 C A PLXNA1 Missense_Mutation p.T1700N 0.18 deleterious(0) probably_damaging(0.975) TCGA-HU-A4G8-01 3 127819504 127819504 G A RUVBL1 Silent p.H229H 0.23 TCGA-HU-A4G8-01 3 128889144 128889144 T - CNBP 3'UTR 0.33 TCGA-HU-A4G8-01 3 128987780 128987780 A G COPG1 Missense_Mutation p.T594A 0.24 tolerated(0.88) benign(0) TCGA-HU-A4G8-01 3 129275467 129275467 C T PLXND1 Missense_Mutation p.R1885Q 0.40 tolerated(0.22) probably_damaging(0.995) TCGA-HU-A4G8-01 3 132419201 132419201 T C NPHP3 Missense_Mutation p.I574V 0.36 tolerated(0.08) benign(0.398) TCGA-HU-A4G8-01 3 132441245 132441245 C T NPHP3 5'UTR 0.39 TCGA-HU-A4G8-01 3 133647420 133647420 C T C3orf36 Silent p.A76A 0.28 TCGA-HU-A4G8-01 3 13393426 13393426 C T NUP210 Missense_Mutation p.A930T 0.24 tolerated(0.66) benign(0.002) TCGA-HU-A4G8-01 3 138023786 138023786 G A NME9 Silent p.D179D 0.22 TCGA-HU-A4G8-01 3 141164238 141164238 G A ZBTB38 Missense_Mutation p.R1003Q 0.24 tolerated(0.38) benign(0.003) TCGA-HU-A4G8-01 3 143185877 143185877 A G SLC9A9 Splice_Site p.X490_splice 0.27 TCGA-HU-A4G8-01 3 147130455 147130455 G A ZIC1 Missense_Mutation p.R378H 0.31 deleterious(0) probably_damaging(0.996) TCGA-HU-A4G8-01 3 151105704 151105704 A G MED12L Missense_Mutation p.D1697G 0.28 deleterious(0) possibly_damaging(0.889) TCGA-HU-A4G8-01 3 152554733 152554733 G A P2RY1 3'UTR 0.26 TCGA-HU-A4G8-01 3 15475880 15475880 G A EAF1 Missense_Mutation p.A121T 0.20 tolerated(0.14) probably_damaging(0.996) TCGA-HU-A4G8-01 3 15497436 15497436 C T COLQ Missense_Mutation p.G389S 0.26 deleterious(0.01) unknown(0) TCGA-HU-A4G8-01 3 16336480 16336481 - C OXNAD1 Frame_Shift_Ins p.A138Cfs*11 0.17 TCGA-HU-A4G8-01 3 167185060 167185060 A - SERPINI2 Frame_Shift_Del p.F87Lfs*3 0.21 TCGA-HU-A4G8-01 3 168840366 168840366 A G MECOM Splice_Site p.X202_splice 0.13 TCGA-HU-A4G8-01 3 169485249 169485249 G T ACTRT3 Missense_Mutation p.P364T 0.08 tolerated(0.07) benign(0.288) TCGA-HU-A4G8-01 3 17053062 17053062 G A PLCL2 Missense_Mutation p.A616T 0.19 deleterious(0.05) probably_damaging(0.97) TCGA-HU-A4G8-01 3 170885049 170885050 - T TNIK Frame_Shift_Ins p.F262Ifs*6 0.21 TCGA-HU-A4G8-01 3 172165588 172165588 G A GHSR Missense_Mutation p.R206C 0.26 deleterious(0.01) possibly_damaging(0.773) TCGA-HU-A4G8-01 3 175473035 175473035 T C NAALADL2 Missense_Mutation p.L673S 0.23 deleterious(0) probably_damaging(0.995) TCGA-HU-A4G8-01 3 176768322 176768322 A G TBL1XR1 Silent p.H168H 0.15 TCGA-HU-A4G8-01 3 180666228 180666228 A - FXR1 Frame_Shift_Del p.N124Ifs*14 0.32 TCGA-HU-A4G8-01 3 184021113 184021113 G - PSMD2 Frame_Shift_Del p.G360Afs*11 0.18 TCGA-HU-A4G8-01 3 185318608 185318608 C A SENP2 Silent p.T138T 0.21 TCGA-HU-A4G8-01 3 188477984 188477984 T C LPP Missense_Mutation p.F442L 0.29 deleterious(0) probably_damaging(0.999) TCGA-HU-A4G8-01 3 188925381 188925381 C T TPRG1 Missense_Mutation p.R70W 0.28 deleterious(0) benign(0.095) TCGA-HU-A4G8-01 3 189584468 189584468 C T TP63 Intron 0.36 TCGA-HU-A4G8-01 3 189675769 189675769 T C LEPREL1 Missense_Mutation p.I687V 0.20 tolerated(1) benign(0.019) TCGA-HU-A4G8-01 3 194062683 194062683 C T CPN2 Missense_Mutation p.R250H 0.26 tolerated(1) benign(0.002) TCGA-HU-A4G8-01 3 195594872 195594872 C T TNK2 Missense_Mutation p.R829H 0.33 tolerated_low_confidence(0.15) benign(0.015) TCGA-HU-A4G8-01 3 195975168 195975168 C T PCYT1A Missense_Mutation p.D82N 0.26 deleterious(0) probably_damaging(1) TCGA-HU-A4G8-01 3 195984673 195984673 C T PCYT1A Missense_Mutation p.S68N 0.18 tolerated(0.1) benign(0.001) TCGA-HU-A4G8-01 3 196388469 196388469 A G NRROS Missense_Mutation p.Y652C 0.24 deleterious(0) probably_damaging(1) TCGA-HU-A4G8-01 3 19921203 19921205 CTC - EFHB In_Frame_Del p.G807del 0.32 TCGA-HU-A4G8-01 3 23959968 23959968 C T RPL15 Silent p.G70G 0.24 TCGA-HU-A4G8-01 3 23996272 23996272 A - NR1D2 Frame_Shift_Del p.S89Vfs*5 0.14 TCGA-HU-A4G8-01 3 32483485 32483485 T C CMTM7 Missense_Mutation p.C105R 0.25 deleterious(0.01) possibly_damaging(0.464) TCGA-HU-A4G8-01 3 38347442 38347442 G A SLC22A14 5'UTR 0.26 TCGA-HU-A4G8-01 3 38592960 38592960 T C SCN5A Missense_Mutation p.R1635G 0.26 deleterious(0) probably_damaging(0.996) TCGA-HU-A4G8-01 3 41979677 41979677 G A ULK4 Missense_Mutation p.R51C 0.33 deleterious(0) benign(0.023) TCGA-HU-A4G8-01 3 43345219 43345219 G A SNRK Missense_Mutation p.C175Y 0.21 deleterious(0) probably_damaging(1) TCGA-HU-A4G8-01 3 4345101 4345101 A G SETMAR Missense_Mutation p.E16G 0.25 deleterious_low_confidence(0.04) benign(0.127) TCGA-HU-A4G8-01 3 440036 440036 T - CHL1 Frame_Shift_Del p.Q1076Kfs*3 0.23 TCGA-HU-A4G8-01 3 440791 440791 T G CHL1 Silent p.T1115T 0.26 TCGA-HU-A4G8-01 3 44673683 44673683 C T ZNF197 Missense_Mutation p.P213S 0.30 tolerated(0.4) probably_damaging(0.996) TCGA-HU-A4G8-01 3 44700762 44700763 - A ZNF35 Frame_Shift_Ins p.T305Nfs*3 0.19 TCGA-HU-A4G8-01 3 44700823 44700823 G A ZNF35 Missense_Mutation p.R323Q 0.17 tolerated(0.4) benign(0.289) TCGA-HU-A4G8-01 3 4732998 4732999 - A ITPR1 Frame_Shift_Ins p.C1321Mfs*42 0.35 TCGA-HU-A4G8-01 3 47452588 47452588 C - PTPN23 Frame_Shift_Del p.P1102Qfs*58 0.38 TCGA-HU-A4G8-01 3 48455369 48455369 C T PLXNB1 Missense_Mutation p.V1441M 0.33 tolerated(0.18) benign(0.003) TCGA-HU-A4G8-01 3 48694482 48694482 C T CELSR3 Missense_Mutation p.E1350K 0.25 tolerated(0.08) probably_damaging(0.998) TCGA-HU-A4G8-01 3 49063765 49063765 G A IMPDH2 Missense_Mutation p.T333M 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-HU-A4G8-01 3 49067844 49067844 T - QRICH1 3'UTR 0.26 TCGA-HU-A4G8-01 3 49166502 49166502 C T LAMB2 Missense_Mutation p.R561Q 0.18 tolerated(0.23) possibly_damaging(0.83) TCGA-HU-A4G8-01 3 49568441 49568441 C T DAG1 Missense_Mutation p.S166L 0.27 deleterious(0.02) benign(0.148) TCGA-HU-A4G8-01 3 49719319 49719319 G - APEH Splice_Site p.X509_splice 0.15 TCGA-HU-A4G8-01 3 49719798 49719798 A G APEH Missense_Mutation p.T541A 0.22 tolerated(0.21) benign(0.043) TCGA-HU-A4G8-01 3 49720815 49720815 A G APEH 3'UTR 0.25 TCGA-HU-A4G8-01 3 49723511 49723511 G A MST1 Silent p.D377D 0.42 TCGA-HU-A4G8-01 3 50095924 50095924 G A RBM6 Missense_Mutation p.V687I 0.31 deleterious(0) benign(0.163) TCGA-HU-A4G8-01 3 50252140 50252140 T C SLC38A3 RNA 0.28 TCGA-HU-A4G8-01 3 50294216 50294216 G A GNAI2 Missense_Mutation p.V219I 0.14 deleterious(0.03) benign(0.007) TCGA-HU-A4G8-01 3 50326272 50326272 G A IFRD2 Missense_Mutation p.R392C 0.26 deleterious(0) probably_damaging(0.99) TCGA-HU-A4G8-01 3 50339708 50339708 G A HYAL1 Missense_Mutation p.A227V 0.14 tolerated(0.32) benign(0.002) TCGA-HU-A4G8-01 3 51417604 51417604 C - DOCK3 Frame_Shift_Del p.P1852Qfs*45 0.24 TCGA-HU-A4G8-01 3 51746849 51746849 C T GRM2 Missense_Mutation p.R271C 0.26 deleterious(0.01) benign(0.344) TCGA-HU-A4G8-01 3 52022841 52022841 C T ACY1 Missense_Mutation p.A354V 0.21 tolerated(0.16) benign(0.082) TCGA-HU-A4G8-01 3 52651369 52651369 C T PBRM1 Missense_Mutation p.R576H 0.32 deleterious(0.02) possibly_damaging(0.766) TCGA-HU-A4G8-01 3 52799920 52799920 G A NEK4 Missense_Mutation p.R217W 0.13 tolerated(0.08) probably_damaging(1) TCGA-HU-A4G8-01 3 52864443 52864443 T - ITIH4 Intron 0.24 TCGA-HU-A4G8-01 3 53263294 53263294 A G TKT Splice_Site p.X430_splice 0.22 TCGA-HU-A4G8-01 3 56695019 56695019 A G FAM208A Missense_Mutation p.V396A 0.19 deleterious(0.02) benign(0.273) TCGA-HU-A4G8-01 3 58140568 58140568 G A FLNB Missense_Mutation p.A2260T 0.26 tolerated(0.1) probably_damaging(1) TCGA-HU-A4G8-01 3 58141758 58141758 G A FLNB Missense_Mutation p.A2313T 0.29 tolerated(0.25) possibly_damaging(0.471) TCGA-HU-A4G8-01 3 62358229 62358229 T G FEZF2 Silent p.G105G 0.36 TCGA-HU-A4G8-01 3 69026835 69026835 A T EOGT Silent p.L422L 0.37 TCGA-HU-A4G8-01 3 70008549 70008549 G A MITF Missense_Mutation p.R380Q 0.29 deleterious(0.04) probably_damaging(0.995) TCGA-HU-A4G8-01 3 72427783 72427783 C T RYBP Missense_Mutation p.R236Q 0.20 deleterious(0.03) benign(0.069) TCGA-HU-A4G8-01 3 72881584 72881584 C T SHQ1 Missense_Mutation p.A179T 0.25 tolerated(0.11) benign(0.027) TCGA-HU-A4G8-01 3 73112169 73112169 A - EBLN2 3'UTR 0.25 TCGA-HU-A4G8-01 3 78666874 78666874 A - ROBO1 Frame_Shift_Del p.F1398Sfs*19 0.17 TCGA-HU-A4G8-01 3 9027576 9027576 C T SRGAP3 Missense_Mutation p.R976Q 0.26 deleterious_low_confidence(0.02) probably_damaging(0.984) TCGA-HU-A4G8-01 3 9036154 9036154 G A SRGAP3 Missense_Mutation p.R761C 0.16 deleterious(0) probably_damaging(0.999) TCGA-HU-A4G8-01 3 97467487 97467487 G A EPHA6 Missense_Mutation p.S1112N 0.32 deleterious(0.04) probably_damaging(0.997) TCGA-HU-A4G8-01 3 97614862 97614862 A T CRYBG3 Missense_Mutation p.D597V 0.27 deleterious(0) probably_damaging(0.984) TCGA-HU-A4G8-01 3 97744439 97744439 G A GABRR3 RNA 0.24 TCGA-HU-A4G8-01 4 100009873 100009874 - G ADH5 5'UTR 0.19 TCGA-HU-A4G8-01 4 103947672 103947672 A G SLC9B2 Missense_Mutation p.V490A 0.27 deleterious(0) probably_damaging(0.992) TCGA-HU-A4G8-01 4 104066443 104066443 T C CENPE Missense_Mutation p.S1541G 0.29 benign(0.08) TCGA-HU-A4G8-01 4 106755746 106755746 A - GSTCD Frame_Shift_Del p.S555Vfs*14 0.16 TCGA-HU-A4G8-01 4 11400811 11400811 C T HS3ST1 Silent p.A273A 0.30 TCGA-HU-A4G8-01 4 114158319 114158319 A G ANK2 Silent p.V220V 0.23 TCGA-HU-A4G8-01 4 114290831 114290831 A G ANK2 Missense_Mutation p.Q3827R 0.23 probably_damaging(0.998) TCGA-HU-A4G8-01 4 120528266 120528266 A G PDE5A Silent p.I113I 0.24 TCGA-HU-A4G8-01 4 1208166 1208166 G A CTBP1 Silent p.G286G 0.28 TCGA-HU-A4G8-01 4 122078294 122078294 G A TNIP3 Silent p.D183D 0.23 TCGA-HU-A4G8-01 4 123117917 123117917 A G KIAA1109 Missense_Mutation p.T394A 0.13 probably_damaging(0.986) TCGA-HU-A4G8-01 4 123283461 123283461 T - KIAA1109 3'UTR 0.37 TCGA-HU-A4G8-01 4 123536892 123536892 T - IL21 Frame_Shift_Del p.K102Sfs*2 0.16 TCGA-HU-A4G8-01 4 123814062 123814062 G A NUDT6 Missense_Mutation p.A291V 0.25 deleterious(0) probably_damaging(0.979) TCGA-HU-A4G8-01 4 126238149 126238149 G A FAT4 Missense_Mutation p.G195S 0.20 probably_damaging(0.983) TCGA-HU-A4G8-01 4 129012197 129012197 G A LARP1B Missense_Mutation p.V134I 0.28 tolerated(0.22) benign(0.139) TCGA-HU-A4G8-01 4 134071927 134071927 G T PCDH10 Missense_Mutation p.G211V 0.26 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-HU-A4G8-01 4 1388396 1388396 C A CRIPAK Missense_Mutation p.P33T 0.25 tolerated_low_confidence(0.16) probably_damaging(0.958) TCGA-HU-A4G8-01 4 141590794 141590794 C T TBC1D9 Silent p.P477P 0.20 TCGA-HU-A4G8-01 4 141888838 141888838 G A RNF150 Missense_Mutation p.A225V 0.25 deleterious(0) possibly_damaging(0.733) TCGA-HU-A4G8-01 4 146041224 146041224 A - ABCE1 Frame_Shift_Del p.M357Wfs*6 0.17 TCGA-HU-A4G8-01 4 146071816 146071816 G A OTUD4 Missense_Mutation p.P305S 0.24 tolerated(0.39) benign(0.392) TCGA-HU-A4G8-01 4 153864507 153864507 T - FHDC1 Frame_Shift_Del p.W102Gfs*55 0.22 TCGA-HU-A4G8-01 4 154626008 154626008 G A TLR2 Missense_Mutation p.R650Q 0.27 tolerated(0.52) benign(0.003) TCGA-HU-A4G8-01 4 155487066 155487066 G A FGB Missense_Mutation p.R74H 0.26 deleterious(0) probably_damaging(0.988) TCGA-HU-A4G8-01 4 155665965 155665965 C T LRAT Missense_Mutation p.H163Y 0.27 deleterious(0) probably_damaging(1) TCGA-HU-A4G8-01 4 157771444 157771444 C A PDGFC Missense_Mutation p.E81D 0.17 tolerated(0.46) benign(0.01) TCGA-HU-A4G8-01 4 159091752 159091752 C T FAM198B Missense_Mutation p.R259H 0.24 tolerated(0.14) benign(0.108) TCGA-HU-A4G8-01 4 15937783 15937783 T C FGFBP1 Missense_Mutation p.N158S 0.19 tolerated(0.34) benign(0.022) TCGA-HU-A4G8-01 4 159568122 159568123 - A RXFP1 Frame_Shift_Ins p.Y511Ifs*9 0.20 TCGA-HU-A4G8-01 4 159789800 159789801 - G FNIP2 Frame_Shift_Ins p.A673Gfs*12 0.24 TCGA-HU-A4G8-01 4 162306896 162306896 T - FSTL5 3'UTR 0.29 TCGA-HU-A4G8-01 4 162307295 162307295 T C FSTL5 Silent p.V716V 0.31 TCGA-HU-A4G8-01 4 164272119 164272119 A G NPY5R Missense_Mutation p.T232A 0.28 tolerated(0.47) benign(0.248) TCGA-HU-A4G8-01 4 170613460 170613460 A - CLCN3 Frame_Shift_Del p.R311Gfs*14 0.19 TCGA-HU-A4G8-01 4 173961169 173961170 CT - GALNTL6 Frame_Shift_Del p.S577* 0.19 TCGA-HU-A4G8-01 4 17517055 17517055 A G CLRN2 Missense_Mutation p.K56E 0.20 deleterious(0.01) benign(0.029) TCGA-HU-A4G8-01 4 175439139 175439139 T - HPGD Frame_Shift_Del p.T103Lfs*20 0.20 TCGA-HU-A4G8-01 4 177052881 177052881 A G WDR17 Missense_Mutation p.R388G 0.23 deleterious(0) possibly_damaging(0.574) TCGA-HU-A4G8-01 4 17847390 17847390 G A NCAPG 3'Flank 0.28 TCGA-HU-A4G8-01 4 1801006 1801006 G A FGFR3 Silent p.Q45Q 0.26 TCGA-HU-A4G8-01 4 184589223 184589226 TTTG - TRAPPC11 Frame_Shift_Del p.F173Yfs*13 0.26 TCGA-HU-A4G8-01 4 185018479 185018479 G A ENPP6 Missense_Mutation p.R346W 0.24 deleterious(0.02) possibly_damaging(0.863) TCGA-HU-A4G8-01 4 185689544 185689544 T C ACSL1 Missense_Mutation p.M352V 0.25 tolerated(0.51) benign(0.023) TCGA-HU-A4G8-01 4 186381015 186381015 G A CCDC110 Silent p.C242C 0.14 TCGA-HU-A4G8-01 4 187541247 187541247 A - FAT1 Frame_Shift_Del p.S2165Qfs*11 0.16 TCGA-HU-A4G8-01 4 187541324 187541324 T - FAT1 Frame_Shift_Del p.K2139Sfs*8 0.20 TCGA-HU-A4G8-01 4 187542246 187542246 C T FAT1 Missense_Mutation p.V1832I 0.32 benign(0.012) TCGA-HU-A4G8-01 4 20512140 20512141 AA - SLIT2 Frame_Shift_Del p.K313Sfs*11 0.19 TCGA-HU-A4G8-01 4 2209759 2209759 T C POLN Missense_Mutation p.I223M 0.21 deleterious(0) benign(0.043) TCGA-HU-A4G8-01 4 25849128 25849128 C T SEL1L3 Missense_Mutation p.R174H 0.39 tolerated(0.14) benign(0.005) TCGA-HU-A4G8-01 4 25849271 25849271 G A SEL1L3 Silent p.P126P 0.23 TCGA-HU-A4G8-01 4 30732429 30732429 G A PCDH7 Intron 0.22 TCGA-HU-A4G8-01 4 38016513 38016513 C T TBC1D1 Silent p.S267S 0.23 TCGA-HU-A4G8-01 4 38691476 38691476 C - KLF3 Frame_Shift_Del p.P226Rfs*52 0.24 TCGA-HU-A4G8-01 4 39471655 39471655 C T LIAS Missense_Mutation p.R252W 0.30 deleterious(0) probably_damaging(0.999) TCGA-HU-A4G8-01 4 41984202 41984202 C T DCAF4L1 Silent p.C131C 0.26 TCGA-HU-A4G8-01 4 44713002 44713002 C T GNPDA2 Missense_Mutation p.V188I 0.23 tolerated_low_confidence(0.08) possibly_damaging(0.887) TCGA-HU-A4G8-01 4 47537590 47537590 A G ATP10D Missense_Mutation p.I281V 0.20 tolerated(0.38) benign(0.075) TCGA-HU-A4G8-01 4 47645224 47645224 T G CORIN Silent p.S669S 0.18 TCGA-HU-A4G8-01 4 48490652 48490652 G A SLC10A4 Missense_Mutation p.G337D 0.24 deleterious(0) probably_damaging(1) TCGA-HU-A4G8-01 4 55962504 55962504 C T KDR Missense_Mutation p.A874T 0.22 deleterious(0) probably_damaging(1) TCGA-HU-A4G8-01 4 56325419 56325419 T C CLOCK Missense_Mutation p.Q190R 0.28 deleterious(0.01) benign(0.15) TCGA-HU-A4G8-01 4 57797474 57797474 G A REST Missense_Mutation p.R817Q 0.25 deleterious_low_confidence(0.01) benign(0.002) TCGA-HU-A4G8-01 4 62758468 62758468 G A LPHN3 Silent p.P457P 0.29 TCGA-HU-A4G8-01 4 68472069 68472069 T C STAP1 Silent p.I294I 0.21 TCGA-HU-A4G8-01 4 68536260 68536260 G A UBA6 Silent p.F199F 0.10 TCGA-HU-A4G8-01 4 69817370 69817370 G A UGT2A3 Missense_Mutation p.L37F 0.08 deleterious(0.01) probably_damaging(0.998) TCGA-HU-A4G8-01 4 7000928 7000928 A G TBC1D14 Missense_Mutation p.M388V 0.25 tolerated(0.17) benign(0.023) TCGA-HU-A4G8-01 4 70346622 70346623 TT - UGT2B4 Frame_Shift_Del p.K439Rfs*12 0.16 TCGA-HU-A4G8-01 4 71508434 71508435 - A ENAM Frame_Shift_Ins p.I433Nfs*33 0.19 TCGA-HU-A4G8-01 4 71660548 71660550 AAG - RUFY3 In_Frame_Del p.R500del 0.24 TCGA-HU-A4G8-01 4 74853683 74853683 C T PPBP Silent p.A46A 0.26 TCGA-HU-A4G8-01 4 75147154 75147154 T C MTHFD2L Missense_Mutation p.L273S 0.24 deleterious(0) benign(0.281) TCGA-HU-A4G8-01 4 76725285 76725285 A T USO1 Splice_Site p.X672_splice 0.19 TCGA-HU-A4G8-01 4 76787404 76787404 C T PPEF2 Missense_Mutation p.D620N 0.22 tolerated(0.15) benign(0.002) TCGA-HU-A4G8-01 4 76804135 76804135 C T PPEF2 Missense_Mutation p.G293S 0.29 deleterious(0) probably_damaging(1) TCGA-HU-A4G8-01 4 76836136 76836136 A G NAAA Missense_Mutation p.F334S 0.25 tolerated(0.4) benign(0) TCGA-HU-A4G8-01 4 7774812 7774812 C A AFAP1 Intron 0.42 TCGA-HU-A4G8-01 4 79353563 79353563 T C FRAS1 Silent p.H1674H 0.14 TCGA-HU-A4G8-01 4 81124482 81124482 C T PRDM8 Silent p.P622P 0.16 TCGA-HU-A4G8-01 4 83581944 83581945 - A SCD5 Intron 0.26 TCGA-HU-A4G8-01 4 84243432 84243432 C T HPSE Missense_Mutation p.D105N 0.22 tolerated(0.38) benign(0.014) TCGA-HU-A4G8-01 4 8603004 8603004 G A CPZ Silent p.Q92Q 0.24 TCGA-HU-A4G8-01 4 88035747 88035747 G A AFF1 Missense_Mutation p.G588R 0.10 deleterious(0.02) unknown(0) TCGA-HU-A4G8-01 4 88236700 88236700 C T HSD17B13 Missense_Mutation p.V168I 0.16 deleterious(0.02) benign(0.415) TCGA-HU-A4G8-01 4 89384739 89384739 G A HERC5 Missense_Mutation p.A249T 0.30 tolerated(0.19) benign(0.144) TCGA-HU-A4G8-01 5 102284105 102284105 A G PAM Missense_Mutation p.Y200C 0.25 deleterious(0) probably_damaging(0.999) TCGA-HU-A4G8-01 5 102326056 102326056 A G PAM Missense_Mutation p.K522E 0.33 tolerated(0.8) benign(0) TCGA-HU-A4G8-01 5 102612180 102612180 A G C5orf30 Missense_Mutation p.Q187R 0.24 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-HU-A4G8-01 5 10290890 10290890 C T CMBL 5'UTR 0.22 TCGA-HU-A4G8-01 5 1074698 1074698 G - SLC12A7 Frame_Shift_Del p.H686Tfs*11 0.25 TCGA-HU-A4G8-01 5 112178041 112178041 C T APC Silent p.G2250G 0.16 TCGA-HU-A4G8-01 5 118485998 118485998 C T DMXL1 Silent p.H1492H 0.19 TCGA-HU-A4G8-01 5 120021789 120021789 T C PRR16 Silent p.N77N 0.26 TCGA-HU-A4G8-01 5 125971812 125971812 G A C5orf48 Missense_Mutation p.R95H 0.30 deleterious(0.03) benign(0.035) TCGA-HU-A4G8-01 5 126754877 126754877 C T MEGF10 Silent p.G457G 0.26 TCGA-HU-A4G8-01 5 127623049 127623049 G A FBN2 Silent p.C2277C 0.24 TCGA-HU-A4G8-01 5 127681173 127681173 C T FBN2 Silent p.A1031A 0.19 TCGA-HU-A4G8-01 5 127681221 127681221 G - FBN2 Frame_Shift_Del p.V1016Ffs*91 0.16 TCGA-HU-A4G8-01 5 128958012 128958012 C T ADAMTS19 Missense_Mutation p.P575S 0.30 tolerated(0.15) benign(0.001) TCGA-HU-A4G8-01 5 128983569 128983569 C T ADAMTS19 Nonsense_Mutation p.R656* 0.19 TCGA-HU-A4G8-01 5 132334415 132334415 T C ZCCHC10 Missense_Mutation p.S125G 0.24 deleterious_low_confidence(0) unknown(0) TCGA-HU-A4G8-01 5 134344663 134344663 C T CATSPER3 Missense_Mutation p.H270Y 0.23 tolerated(0.05) benign(0.01) TCGA-HU-A4G8-01 5 134870851 134870851 G - NEUROG1 Frame_Shift_Del p.P177Qfs*74 0.34 TCGA-HU-A4G8-01 5 137244547 137244547 T - PKD2L2 Frame_Shift_Del p.F415Lfs*2 0.27 TCGA-HU-A4G8-01 5 137451283 137451283 A C NME5 3'UTR 0.22 TCGA-HU-A4G8-01 5 137451362 137451362 T - NME5 3'UTR 0.64 TCGA-HU-A4G8-01 5 139947265 139947265 C - SLC35A4 Frame_Shift_Del p.P172Lfs*16 0.19 TCGA-HU-A4G8-01 5 139947548 139947548 T G SLC35A4 Missense_Mutation p.L265R 0.21 deleterious(0) probably_damaging(0.998) TCGA-HU-A4G8-01 5 140208920 140208920 G A PCDHA6 Missense_Mutation p.R415H 0.20 deleterious_low_confidence(0.03) probably_damaging(0.913) TCGA-HU-A4G8-01 5 140215835 140215835 C T PCDHA7 Missense_Mutation p.R623C 0.25 deleterious_low_confidence(0) possibly_damaging(0.585) TCGA-HU-A4G8-01 5 140255609 140255609 A - PCDHA12 Frame_Shift_Del p.D187Ifs*8 0.18 TCGA-HU-A4G8-01 5 140256507 140256507 G A PCDHA12 Missense_Mutation p.A484T 0.24 tolerated_low_confidence(0.05) possibly_damaging(0.492) TCGA-HU-A4G8-01 5 140263263 140263263 G A PCDHA13 Silent p.P470P 0.31 TCGA-HU-A4G8-01 5 1403165 1403165 G - SLC6A3 Frame_Shift_Del p.H547Tfs*114 0.26 TCGA-HU-A4G8-01 5 140481929 140481929 C T PCDHB3 Nonsense_Mutation p.Q566* 0.21 TCGA-HU-A4G8-01 5 140503537 140503537 G A PCDHB4 Missense_Mutation p.A653T 0.25 tolerated_low_confidence(0.23) benign(0.169) TCGA-HU-A4G8-01 5 140559250 140559250 G T PCDHB8 Missense_Mutation p.E545D 0.22 deleterious_low_confidence(0.02) benign(0.107) TCGA-HU-A4G8-01 5 140589805 140589805 C T PCDHB12 Silent p.S442S 0.15 TCGA-HU-A4G8-01 5 140616457 140616457 C T PCDHB18 RNA 0.23 TCGA-HU-A4G8-01 5 140731679 140731679 C T PCDHGB1 Missense_Mutation p.R618C 0.22 deleterious(0.01) probably_damaging(0.992) TCGA-HU-A4G8-01 5 140744719 140744719 C T PCDHGA5 Silent p.N274N 0.24 TCGA-HU-A4G8-01 5 140755384 140755384 G A PCDHGA6 Silent p.A578A 0.24 TCGA-HU-A4G8-01 5 140792938 140792938 C T PCDHGA10 Missense_Mutation p.R66C 0.26 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-HU-A4G8-01 5 140798759 140798759 G A PCDHGB7 Missense_Mutation p.V445I 0.20 tolerated(0.6) benign(0.031) TCGA-HU-A4G8-01 5 140801792 140801792 C T PCDHGA11 Missense_Mutation p.T333M 0.18 deleterious_low_confidence(0) benign(0.054) TCGA-HU-A4G8-01 5 140855830 140855830 C T PCDHGC3 Silent p.N49N 0.27 TCGA-HU-A4G8-01 5 141017821 141017821 C T RELL2 Missense_Mutation p.P10L 0.13 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-HU-A4G8-01 5 141024147 141024147 C A FCHSD1 Missense_Mutation p.E545D 0.29 tolerated(0.44) possibly_damaging(0.507) TCGA-HU-A4G8-01 5 14462953 14462953 G - TRIO Frame_Shift_Del p.A1864Pfs*32 0.16 TCGA-HU-A4G8-01 5 146257587 146257587 G A PPP2R2B Intron 0.19 TCGA-HU-A4G8-01 5 146435341 146435341 A G PPP2R2B 5'UTR 0.36 TCGA-HU-A4G8-01 5 14711209 14711209 A - ANKH 3'UTR 0.33 TCGA-HU-A4G8-01 5 14758594 14758594 C T ANKH Missense_Mutation p.A143T 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-HU-A4G8-01 5 150028582 150028582 G - SYNPO Frame_Shift_Del p.G494Afs*11 0.19 TCGA-HU-A4G8-01 5 151784218 151784218 G A NMUR2 Missense_Mutation p.R153C 0.30 deleterious(0) probably_damaging(0.976) TCGA-HU-A4G8-01 5 153030057 153030057 A G GRIA1 Missense_Mutation p.N220D 0.22 tolerated(0.4) benign(0.092) TCGA-HU-A4G8-01 5 153085522 153085522 G A GRIA1 Missense_Mutation p.G583E 0.24 tolerated(0.05) probably_damaging(1) TCGA-HU-A4G8-01 5 154250333 154250333 A T CNOT8 Missense_Mutation p.T142S 0.23 tolerated(0.97) benign(0.006) TCGA-HU-A4G8-01 5 156186283 156186283 C T SGCD Missense_Mutation p.T252M 0.18 deleterious(0.01) benign(0.097) TCGA-HU-A4G8-01 5 159399041 159399041 G A ADRA1B Missense_Mutation p.G369S 0.38 tolerated_low_confidence(0.89) unknown(0) TCGA-HU-A4G8-01 5 160044942 160044942 G A ATP10B Nonsense_Mutation p.R819* 0.34 TCGA-HU-A4G8-01 5 16091068 16091068 C T MARCH11 Silent p.V272V 0.28 TCGA-HU-A4G8-01 5 171766919 171766919 A G SH3PXD2B Missense_Mutation p.V397A 0.18 deleterious(0) probably_damaging(0.999) TCGA-HU-A4G8-01 5 172755134 172755134 C T STC2 Silent p.P21P 0.22 TCGA-HU-A4G8-01 5 176017111 176017111 A G CDHR2 Missense_Mutation p.Y1080C 0.27 deleterious(0.01) probably_damaging(0.995) TCGA-HU-A4G8-01 5 176025264 176025264 C T GPRIN1 Silent p.S524S 0.19 TCGA-HU-A4G8-01 5 176289759 176289759 C T UNC5A Missense_Mutation p.P69S 0.23 deleterious(0) probably_damaging(0.998) TCGA-HU-A4G8-01 5 176942216 176942216 T C DDX41 Silent p.T205T 0.25 TCGA-HU-A4G8-01 5 177035941 177035941 T C B4GALT7 Missense_Mutation p.Y252H 0.13 tolerated(0.3) probably_damaging(0.987) TCGA-HU-A4G8-01 5 178770846 178770846 G A ADAMTS2 Silent p.L152L 0.27 TCGA-HU-A4G8-01 5 179226008 179226008 G A MGAT4B Silent p.R436R 0.20 TCGA-HU-A4G8-01 5 180661717 180661718 GT - TRIM41 Frame_Shift_Del p.V613Lfs*41 0.17 TCGA-HU-A4G8-01 5 180666109 180666109 C T GNB2L1 Silent p.V198V 0.18 TCGA-HU-A4G8-01 5 26881726 26881726 A G CDH9 Missense_Mutation p.V630A 0.14 deleterious(0.01) benign(0.03) TCGA-HU-A4G8-01 5 31401568 31401569 - CT DROSHA Frame_Shift_Ins p.P1366Sfs*24 0.15 TCGA-HU-A4G8-01 5 32058196 32058196 A G PDZD2 Silent p.V729V 0.24 TCGA-HU-A4G8-01 5 32403354 32403354 G A ZFR Missense_Mutation p.T458M 0.21 tolerated(0.05) unknown(0) TCGA-HU-A4G8-01 5 32712408 32712408 C T NPR3 Missense_Mutation p.R176C 0.21 deleterious(0) probably_damaging(1) TCGA-HU-A4G8-01 5 33649731 33649731 C T ADAMTS12 Missense_Mutation p.R421H 0.15 tolerated(0.13) benign(0.179) TCGA-HU-A4G8-01 5 34821836 34821836 G A RAI14 Splice_Site p.X335_splice 0.16 TCGA-HU-A4G8-01 5 35705773 35705773 A G SPEF2 Missense_Mutation p.N843S 0.10 tolerated(0.35) benign(0.081) TCGA-HU-A4G8-01 5 36984875 36984875 G A NIPBL Silent p.T531T 0.26 TCGA-HU-A4G8-01 5 38947419 38947419 A G RICTOR Missense_Mutation p.S1421P 0.27 tolerated(0.07) benign(0.004) TCGA-HU-A4G8-01 5 40834687 40834687 C T RPL37 Missense_Mutation p.G9R 0.18 deleterious(0.03) possibly_damaging(0.701) TCGA-HU-A4G8-01 5 41927195 41927195 T C FBXO4 Silent p.N90N 0.19 TCGA-HU-A4G8-01 5 50090969 50090969 T C PARP8 Silent p.H382H 0.36 TCGA-HU-A4G8-01 5 55237207 55237207 A G IL6ST Silent p.S820S 0.20 TCGA-HU-A4G8-01 5 55247869 55247869 T - IL6ST Frame_Shift_Del p.V530* 0.15 TCGA-HU-A4G8-01 5 55260022 55260022 G T IL6ST Missense_Mutation p.L204I 0.29 deleterious(0) possibly_damaging(0.769) TCGA-HU-A4G8-01 5 55407273 55407273 C T ANKRD55 Silent p.T434T 0.22 TCGA-HU-A4G8-01 5 58334702 58334702 T C PDE4D Missense_Mutation p.E302G 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.843) TCGA-HU-A4G8-01 5 59284348 59284348 G A PDE4D Missense_Mutation p.P80L 0.26 deleterious_low_confidence(0.02) benign(0.105) TCGA-HU-A4G8-01 5 61659560 61659560 G A KIF2A Missense_Mutation p.R434Q 0.24 deleterious(0) probably_damaging(0.976) TCGA-HU-A4G8-01 5 65370919 65370920 - C ERBB2IP Frame_Shift_Ins p.Q1285Sfs*10 0.23 TCGA-HU-A4G8-01 5 66478997 66478997 G A CD180 Silent p.I558I 0.15 TCGA-HU-A4G8-01 5 6737646 6737646 T C PAPD7 5'UTR 0.22 TCGA-HU-A4G8-01 5 76700591 76700591 C T PDE8B Silent p.D419D 0.22 TCGA-HU-A4G8-01 5 76747154 76747154 G T WDR41 Missense_Mutation p.P183H 0.24 deleterious(0) probably_damaging(0.999) TCGA-HU-A4G8-01 5 76788053 76788053 G T WDR41 5'UTR 0.26 TCGA-HU-A4G8-01 5 7851031 7851031 C T C5orf49 Missense_Mutation p.R35H 0.32 deleterious(0.02) benign(0.097) TCGA-HU-A4G8-01 5 79031458 79031458 A - CMYA5 Frame_Shift_Del p.E2293Kfs*9 0.19 TCGA-HU-A4G8-01 5 80689868 80689868 C T ACOT12 Silent p.A22A 0.25 TCGA-HU-A4G8-01 5 80932421 80932421 T - SSBP2 Frame_Shift_Del p.N51Tfs*54 0.22 TCGA-HU-A4G8-01 5 82815289 82815289 A G VCAN Silent p.L388L 0.23 TCGA-HU-A4G8-01 5 89820956 89820956 G A LYSMD3 Nonsense_Mutation p.R51* 0.17 TCGA-HU-A4G8-01 5 89921010 89921010 C - GPR98 Frame_Shift_Del p.P209Lfs*6 0.16 TCGA-HU-A4G8-01 5 92924128 92924128 A C NR2F1 Missense_Mutation p.K323N 0.20 deleterious(0) probably_damaging(0.93) TCGA-HU-A4G8-01 5 94989932 94989932 G A RFESD Missense_Mutation p.R109H 0.20 tolerated(0.14) benign(0.158) TCGA-HU-A4G8-01 5 96224963 96224963 T - ERAP2 Frame_Shift_Del p.Y310Mfs*16 0.20 TCGA-HU-A4G8-01 6 109215690 109215690 C T ARMC2 Missense_Mutation p.A231V 0.18 tolerated(0.5) benign(0.001) TCGA-HU-A4G8-01 6 10935386 10935386 T - SYCP2L Frame_Shift_Del p.L595* 0.26 TCGA-HU-A4G8-01 6 110746117 110746117 T - SLC22A16 Frame_Shift_Del p.T565Rfs*21 0.21 TCGA-HU-A4G8-01 6 111636522 111636522 G A REV3L Missense_Mutation p.A2805V 0.30 deleterious(0.03) probably_damaging(1) TCGA-HU-A4G8-01 6 118228994 118228994 C T SLC35F1 Silent p.G35G 0.36 TCGA-HU-A4G8-01 6 119324113 119324113 T - FAM184A Frame_Shift_Del p.N680Mfs*11 0.22 TCGA-HU-A4G8-01 6 127607921 127607921 G A RNF146 Missense_Mutation p.V55I 0.24 tolerated(0.75) benign(0.07) TCGA-HU-A4G8-01 6 129465215 129465215 T A LAMA2 Missense_Mutation p.V270D 0.19 deleterious(0) probably_damaging(1) TCGA-HU-A4G8-01 6 129649528 129649528 C A LAMA2 Missense_Mutation p.L1428M 0.33 tolerated(0.27) benign(0.027) TCGA-HU-A4G8-01 6 132204888 132204888 T C ENPP1 Missense_Mutation p.I762T 0.29 tolerated(0.26) benign(0.046) TCGA-HU-A4G8-01 6 13365634 13365634 C T GFOD1 Missense_Mutation p.G172S 0.23 tolerated(0.52) benign(0.389) TCGA-HU-A4G8-01 6 135239640 135239640 C - ALDH8A1 Frame_Shift_Del p.M460* 0.18 TCGA-HU-A4G8-01 6 136596789 136596789 G T BCLAF1 Missense_Mutation p.S578Y 0.08 tolerated(0.08) possibly_damaging(0.781) TCGA-HU-A4G8-01 6 137245364 137245364 G T SLC35D3 Missense_Mutation p.V261L 0.17 tolerated(0.2) probably_damaging(0.999) TCGA-HU-A4G8-01 6 138201245 138201245 G A TNFAIP3 Silent p.A648A 0.27 TCGA-HU-A4G8-01 6 143092422 143092422 G A HIVEP2 Missense_Mutation p.H1152Y 0.22 tolerated(0.34) benign(0.001) TCGA-HU-A4G8-01 6 143093293 143093293 C T HIVEP2 Silent p.G861G 0.23 TCGA-HU-A4G8-01 6 144086699 144086699 G A PHACTR2 Silent p.K332K 0.20 TCGA-HU-A4G8-01 6 144780421 144780421 G A UTRN Missense_Mutation p.D880N 0.30 tolerated(0.49) benign(0.002) TCGA-HU-A4G8-01 6 146256106 146256106 C A SHPRH Missense_Mutation p.R976M 0.20 deleterious(0) probably_damaging(0.996) TCGA-HU-A4G8-01 6 147680408 147680408 C - STXBP5 Frame_Shift_Del p.P833Qfs*11 0.19 TCGA-HU-A4G8-01 6 150690214 150690214 T C IYD Missense_Mutation p.V16A 0.25 tolerated(0.13) benign(0.012) TCGA-HU-A4G8-01 6 151672182 151672182 G A AKAP12 Missense_Mutation p.E886K 0.24 tolerated(1) benign(0) TCGA-HU-A4G8-01 6 152201865 152201865 G A ESR1 Missense_Mutation p.C240Y 0.31 deleterious(0) probably_damaging(0.967) TCGA-HU-A4G8-01 6 152826383 152826383 G C SYNE1 Missense_Mutation p.T244S 0.27 benign(0.003) TCGA-HU-A4G8-01 6 15496722 15496722 G - JARID2 Frame_Shift_Del p.R425Gfs*36 0.27 TCGA-HU-A4G8-01 6 15513220 15513220 A - JARID2 Frame_Shift_Del p.E1073Kfs*106 0.21 TCGA-HU-A4G8-01 6 157517409 157517409 C T ARID1B Nonsense_Mutation p.Q1325* 0.27 TCGA-HU-A4G8-01 6 158914686 158914686 C T TULP4 Silent p.R571R 0.22 TCGA-HU-A4G8-01 6 161132209 161132210 - C PLG Frame_Shift_Ins p.H133Pfs*4 0.16 TCGA-HU-A4G8-01 6 161529828 161529828 G T MAP3K4 Missense_Mutation p.L1391F 0.19 deleterious(0.02) benign(0.35) TCGA-HU-A4G8-01 6 16327407 16327407 G A ATXN1 Missense_Mutation p.R379W 0.24 deleterious(0) probably_damaging(0.994) TCGA-HU-A4G8-01 6 16327474 16327474 G A ATXN1 Silent p.Y356Y 0.26 TCGA-HU-A4G8-01 6 165756927 165756927 C T PDE10A Missense_Mutation p.V684I 0.32 tolerated(0.51) benign(0.017) TCGA-HU-A4G8-01 6 18222307 18222307 A - KDM1B 3'UTR 0.17 TCGA-HU-A4G8-01 6 26123917 26123917 C T HIST1H2BC Silent p.E72E 0.23 TCGA-HU-A4G8-01 6 26158762 26158762 A G HIST1H2BD Missense_Mutation p.Y122C 0.25 deleterious_low_confidence(0.01) benign(0.004) TCGA-HU-A4G8-01 6 26216833 26216835 CTT - HIST1H2BG In_Frame_Del p.K13del 0.26 TCGA-HU-A4G8-01 6 27783081 27783081 G A HIST1H2BM Missense_Mutation p.R87H 0.24 tolerated_low_confidence(0.16) benign(0.082) TCGA-HU-A4G8-01 6 27860683 27860683 C G HIST1H2AM Missense_Mutation p.R82P 0.24 deleterious_low_confidence(0.03) probably_damaging(0.989) TCGA-HU-A4G8-01 6 28327511 28327511 C T ZKSCAN3 Nonsense_Mutation p.R50* 0.19 TCGA-HU-A4G8-01 6 292507 292507 C T DUSP22 5'UTR 0.20 TCGA-HU-A4G8-01 6 29599309 29599309 C G GABBR1 Silent p.V51V 0.26 TCGA-HU-A4G8-01 6 29795987 29795987 G T HLA-G Missense_Mutation p.E79D 0.24 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-HU-A4G8-01 6 29912156 29912156 C - HLA-A Frame_Shift_Del p.L294Sfs*3 0.29 TCGA-HU-A4G8-01 6 30622578 30622581 CTGT - DHX16 Frame_Shift_Del p.T967Sfs*24 0.27 TCGA-HU-A4G8-01 6 31779712 31779712 A G HSPA1L Missense_Mutation p.L13P 0.18 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-HU-A4G8-01 6 31833766 31833766 T C SLC44A4 Silent p.V457V 0.25 TCGA-HU-A4G8-01 6 31850545 31850545 T C EHMT2 Missense_Mutation p.Y1043C 0.13 deleterious(0) probably_damaging(0.998) TCGA-HU-A4G8-01 6 31868388 31868388 C - ZBTB12 Frame_Shift_Del p.G232Vfs*25 0.20 TCGA-HU-A4G8-01 6 32064801 32064801 T C TNXB Missense_Mutation p.M277V 0.20 benign(0) TCGA-HU-A4G8-01 6 32065916 32065916 T G TNXB Silent p.T20T 0.23 TCGA-HU-A4G8-01 6 33132047 33132047 G A COL11A2 Silent p.C1603C 0.25 TCGA-HU-A4G8-01 6 33283797 33283797 G A ZBTB22 Silent p.Y299Y 0.14 TCGA-HU-A4G8-01 6 33381045 33381045 G A PHF1 Missense_Mutation p.R137H 0.17 deleterious(0) probably_damaging(1) TCGA-HU-A4G8-01 6 35423794 35423794 G - FANCE Frame_Shift_Del p.G175Afs*4 0.17 TCGA-HU-A4G8-01 6 36063811 36063811 G A MAPK14 Intron 0.27 TCGA-HU-A4G8-01 6 36882373 36882373 G A C6orf89 Missense_Mutation p.C207Y 0.23 tolerated(0.29) probably_damaging(0.957) TCGA-HU-A4G8-01 6 37626122 37626122 C T MDGA1 Missense_Mutation p.R94H 0.31 tolerated(0.08) probably_damaging(0.938) TCGA-HU-A4G8-01 6 38142774 38142774 C T BTBD9 Missense_Mutation p.R609Q 0.21 tolerated_low_confidence(0.57) benign(0.238) TCGA-HU-A4G8-01 6 38941550 38941550 T G DNAH8 Silent p.T3996T 0.26 TCGA-HU-A4G8-01 6 40359880 40359880 G A LRFN2 Silent p.F724F 0.32 TCGA-HU-A4G8-01 6 41704566 41704566 A C PGC 3'UTR 0.22 TCGA-HU-A4G8-01 6 42236161 42236161 G - TRERF1 Frame_Shift_Del p.L390Sfs*18 0.19 TCGA-HU-A4G8-01 6 43153240 43153240 C T CUL9 Silent p.I214I 0.17 TCGA-HU-A4G8-01 6 44148736 44148736 T C CAPN11 Splice_Site p.X623_splice 0.26 TCGA-HU-A4G8-01 6 45390460 45390460 G A RUNX2 Silent p.Q63Q 0.31 TCGA-HU-A4G8-01 6 46216602 46216602 T C RCAN2 Missense_Mutation p.D86G 0.18 tolerated(0.14) possibly_damaging(0.573) TCGA-HU-A4G8-01 6 46656549 46656549 G A TDRD6 Silent p.S228S 0.29 TCGA-HU-A4G8-01 6 46659238 46659238 A C TDRD6 Missense_Mutation p.K1125Q 0.26 deleterious(0) possibly_damaging(0.78) TCGA-HU-A4G8-01 6 49427151 49427151 A - MUT Frame_Shift_Del p.L10Yfs*7 0.16 TCGA-HU-A4G8-01 6 50683050 50683050 C T TFAP2D Silent p.P87P 0.25 TCGA-HU-A4G8-01 6 52344444 52344444 G A EFHC1 Missense_Mutation p.G500D 0.28 deleterious(0.02) possibly_damaging(0.707) TCGA-HU-A4G8-01 6 52657737 52657737 G T GSTA1 Silent p.R155R 0.27 TCGA-HU-A4G8-01 6 56382365 56382365 T - DST Frame_Shift_Del p.K3438Nfs*2 0.23 TCGA-HU-A4G8-01 6 57246923 57246923 T C PRIM2 Missense_Mutation p.I217T 0.15 deleterious(0.03) possibly_damaging(0.835) TCGA-HU-A4G8-01 6 71235966 71235966 G A FAM135A Missense_Mutation p.S1060N 0.34 tolerated(0.12) benign(0.003) TCGA-HU-A4G8-01 6 72892717 72892717 A G RIMS1 Missense_Mutation p.K515E 0.47 deleterious(0.03) benign(0.005) TCGA-HU-A4G8-01 6 73902287 73902287 G A KCNQ5 Splice_Site p.X589_splice 0.22 TCGA-HU-A4G8-01 6 76022914 76022914 G A FILIP1 Silent p.N878N 0.28 TCGA-HU-A4G8-01 6 7727782 7727782 C A BMP6 Silent p.S198S 0.33 TCGA-HU-A4G8-01 6 79607974 79607974 G A IRAK1BP1 Missense_Mutation p.A236T 0.11 tolerated(0.17) benign(0.092) TCGA-HU-A4G8-01 6 80196804 80196804 G A LCA5 Nonsense_Mutation p.R671* 0.30 TCGA-HU-A4G8-01 6 80223190 80223190 G A LCA5 Silent p.A153A 0.18 TCGA-HU-A4G8-01 6 80720630 80720630 A - TTK Frame_Shift_Del p.K192Sfs*18 0.16 TCGA-HU-A4G8-01 6 83602713 83602713 G - UBE3D 3'UTR 0.20 TCGA-HU-A4G8-01 6 88229955 88229955 T - RARS2 Frame_Shift_Del p.K352Sfs*10 0.24 TCGA-HU-A4G8-01 6 88854552 88854552 G A CNR1 Missense_Mutation p.R148C 0.20 deleterious(0.01) probably_damaging(1) TCGA-HU-A4G8-01 6 90415853 90415853 A - MDN1 Frame_Shift_Del p.F2691Lfs*7 0.09 TCGA-HU-A4G8-01 6 96997630 96997630 G A UFL1 Silent p.S591S 0.25 TCGA-HU-A4G8-01 6 99284028 99284028 G - POU3F2 Frame_Shift_Del p.S429Vfs*60 0.12 TCGA-HU-A4G8-01 6 99819461 99819461 G A COQ3 Silent p.P244P 0.26 TCGA-HU-A4G8-01 6 99857155 99857155 T C PNISR Silent p.P189P 0.22 TCGA-HU-A4G8-01 7 100017294 100017294 T - ZCWPW1 Frame_Shift_Del p.R81Efs*57 0.22 TCGA-HU-A4G8-01 7 100085906 100085906 G - NYAP1 Frame_Shift_Del p.N190Tfs*13 0.18 TCGA-HU-A4G8-01 7 100285170 100285170 G - GIGYF1 Frame_Shift_Del p.L111Wfs*234 0.36 TCGA-HU-A4G8-01 7 100334562 100334562 G T ZAN Missense_Mutation p.W128C 0.56 probably_damaging(0.987) TCGA-HU-A4G8-01 7 100486382 100486382 C A UFSP1 3'UTR 0.20 TCGA-HU-A4G8-01 7 100550132 100550132 C T MUC3A Missense_Mutation p.T238I 0.13 deleterious_low_confidence(0.01) unknown(0) TCGA-HU-A4G8-01 7 100676852 100676852 G A MUC17 Missense_Mutation p.V719M 0.30 probably_damaging(0.945) TCGA-HU-A4G8-01 7 100684616 100684616 G A MUC17 Missense_Mutation p.D3307N 0.25 possibly_damaging(0.902) TCGA-HU-A4G8-01 7 101870751 101870751 C - CUX1 Frame_Shift_Del p.I1092Sfs*39 0.20 TCGA-HU-A4G8-01 7 102097763 102097763 C T ALKBH4 3'UTR 0.28 TCGA-HU-A4G8-01 7 103113350 103113350 C T RELN Missense_Mutation p.R3431H 0.18 tolerated_low_confidence(0.06) possibly_damaging(0.629) TCGA-HU-A4G8-01 7 1037311 1037312 GG - C7orf50 Frame_Shift_Del p.L179Afs*53 0.18 TCGA-HU-A4G8-01 7 103844680 103844681 TC - ORC5 Frame_Shift_Del p.R25Tfs*16 0.23 TCGA-HU-A4G8-01 7 104746985 104746985 A - KMT2E Frame_Shift_Del p.K873Nfs*8 0.18 TCGA-HU-A4G8-01 7 107669592 107669592 C T LAMB4 Missense_Mutation p.S1681N 0.26 tolerated(0.23) benign(0.01) TCGA-HU-A4G8-01 7 107671353 107671353 T C LAMB4 Silent p.G1630G 0.31 TCGA-HU-A4G8-01 7 107763633 107763633 T A LAMB4 5'UTR 0.19 TCGA-HU-A4G8-01 7 1131360 1131360 G A GPER1 5'UTR 0.23 TCGA-HU-A4G8-01 7 11676473 11676473 G A THSD7A Silent p.A102A 0.29 TCGA-HU-A4G8-01 7 120979382 120979382 G A WNT16 Missense_Mutation p.V361I 0.29 tolerated(0.23) benign(0.114) TCGA-HU-A4G8-01 7 121674154 121674157 GAAA - PTPRZ1 Frame_Shift_Del p.K1725Sfs*13 0.33 TCGA-HU-A4G8-01 7 121716488 121716488 A G AASS 3'UTR 0.21 TCGA-HU-A4G8-01 7 123302536 123302536 C T LMOD2 Missense_Mutation p.T299M 0.25 deleterious(0.03) probably_damaging(0.961) TCGA-HU-A4G8-01 7 127013759 127013759 T - ZNF800 Frame_Shift_Del p.K544Sfs*9 0.14 TCGA-HU-A4G8-01 7 127229626 127229626 G T ARF5 Missense_Mutation p.R79L 0.28 deleterious_low_confidence(0) possibly_damaging(0.693) TCGA-HU-A4G8-01 7 127342555 127342555 T C SND1 Missense_Mutation p.V219A 0.27 tolerated(0.05) benign(0.411) TCGA-HU-A4G8-01 7 127669623 127669623 G A LRRC4 Silent p.D357D 0.27 TCGA-HU-A4G8-01 7 128630077 128630077 T C TNPO3 Missense_Mutation p.Y479C 0.25 deleterious(0) benign(0.036) TCGA-HU-A4G8-01 7 129350308 129350308 C T NRF1 Missense_Mutation p.T287M 0.19 tolerated(0.09) benign(0.052) TCGA-HU-A4G8-01 7 130024461 130024461 T C CPA1 Missense_Mutation p.F261L 0.21 deleterious(0) probably_damaging(1) TCGA-HU-A4G8-01 7 130418141 130418141 G A KLF14 Silent p.D240D 0.16 TCGA-HU-A4G8-01 7 131817885 131817885 G T PLXNA4 Silent p.R1838R 0.20 TCGA-HU-A4G8-01 7 131859624 131859624 G A PLXNA4 Silent p.A1310A 0.23 TCGA-HU-A4G8-01 7 135079025 135079025 G A CNOT4 Silent p.S424S 0.19 TCGA-HU-A4G8-01 7 138764823 138764823 C T ZC3HAV1 Silent p.A288A 0.23 TCGA-HU-A4G8-01 7 139107037 139107037 G A LUC7L2 Missense_Mutation p.R443K 0.19 tolerated_low_confidence(0.61) unknown(0) TCGA-HU-A4G8-01 7 139168278 139168278 C A KLRG2 Missense_Mutation p.K37N 0.27 deleterious_low_confidence(0) benign(0.056) TCGA-HU-A4G8-01 7 141539138 141539138 G A PRSS37 Missense_Mutation p.P59L 0.24 tolerated(0.1) benign(0.081) TCGA-HU-A4G8-01 7 141540953 141540953 A G PRSS37 5'UTR 0.17 TCGA-HU-A4G8-01 7 141750608 141750608 C T MGAM Missense_Mutation p.H917Y 0.26 tolerated(0.65) benign(0) TCGA-HU-A4G8-01 7 143054474 143054474 G A FAM131B Missense_Mutation p.A170V 0.20 deleterious(0) probably_damaging(0.999) TCGA-HU-A4G8-01 7 143088529 143088529 G T EPHA1 3'UTR 0.33 TCGA-HU-A4G8-01 7 14378324 14378324 T C DGKB Silent p.V647V 0.27 TCGA-HU-A4G8-01 7 143792462 143792462 A - OR2A12 Frame_Shift_Del p.V90Sfs*23 0.26 TCGA-HU-A4G8-01 7 149129440 149129440 G A ZNF777 Silent p.C641C 0.26 TCGA-HU-A4G8-01 7 149490507 149490507 A G SSPO RNA 0.22 TCGA-HU-A4G8-01 7 150656679 150656679 G - KCNH2 Frame_Shift_Del p.T152Pfs*14 0.21 TCGA-HU-A4G8-01 7 151680068 151680068 C T GALNTL5 Intron 0.25 TCGA-HU-A4G8-01 7 156762298 156762298 C T NOM1 Silent p.N828N 0.16 TCGA-HU-A4G8-01 7 157959769 157959769 G - PTPRN2 Frame_Shift_Del p.P255Qfs*57 0.21 TCGA-HU-A4G8-01 7 17375352 17375352 C T AHR Missense_Mutation p.R368C 0.21 deleterious(0) probably_damaging(0.996) TCGA-HU-A4G8-01 7 19184667 19184667 T C FERD3L Missense_Mutation p.N107D 0.20 deleterious(0) probably_damaging(1) TCGA-HU-A4G8-01 7 19748656 19748656 C T TWISTNB 5'UTR 0.10 TCGA-HU-A4G8-01 7 20371449 20371450 - T ITGB8 Frame_Shift_Ins p.T10Yfs*34 0.20 TCGA-HU-A4G8-01 7 2284269 2284269 G A NUDT1 Silent p.L43L 0.27 TCGA-HU-A4G8-01 7 2472759 2472759 G A CHST12 Missense_Mutation p.R162Q 0.23 tolerated(0.06) possibly_damaging(0.782) TCGA-HU-A4G8-01 7 27141905 27141905 C T HOXA2 Missense_Mutation p.R72H 0.42 deleterious(0.05) benign(0.02) TCGA-HU-A4G8-01 7 27204770 27204770 G C HOXA9 Missense_Mutation p.P103A 0.14 tolerated(0.62) probably_damaging(0.989) TCGA-HU-A4G8-01 7 29966126 29966126 C T SCRN1 Missense_Mutation p.R363H 0.20 deleterious(0) possibly_damaging(0.73) TCGA-HU-A4G8-01 7 34118763 34118763 T C BMPER Missense_Mutation p.L458P 0.18 deleterious(0.02) benign(0.082) TCGA-HU-A4G8-01 7 34697911 34697911 C A NPSR1 5'UTR 0.30 TCGA-HU-A4G8-01 7 40132557 40132557 G A CDK13 Missense_Mutation p.A1137T 0.22 tolerated(0.19) benign(0.182) TCGA-HU-A4G8-01 7 43508655 43508655 G A HECW1 Missense_Mutation p.R1017Q 0.18 tolerated(1) benign(0.003) TCGA-HU-A4G8-01 7 44155855 44155855 T C POLD2 Missense_Mutation p.D293G 0.25 deleterious(0) probably_damaging(0.985) TCGA-HU-A4G8-01 7 44706400 44706400 G - OGDH Frame_Shift_Del p.G196Dfs*85 0.27 TCGA-HU-A4G8-01 7 44804082 44804082 G A ZMIZ2 Missense_Mutation p.C642Y 0.18 deleterious(0) probably_damaging(1) TCGA-HU-A4G8-01 7 4899601 4899601 A G PAPOLB Missense_Mutation p.V613A 0.17 tolerated_low_confidence(0.21) benign(0.008) TCGA-HU-A4G8-01 7 57529541 57529541 T C ZNF716 Silent p.H458H 0.41 TCGA-HU-A4G8-01 7 64465484 64465484 C T ERV3-1 Intron 0.25 TCGA-HU-A4G8-01 7 66415976 66415976 G A TMEM248 Missense_Mutation p.A212T 0.23 tolerated(0.1) possibly_damaging(0.886) TCGA-HU-A4G8-01 7 73753283 73753283 C T CLIP2 Silent p.S209S 0.27 TCGA-HU-A4G8-01 7 74191684 74191684 C T NCF1 Silent p.Y48Y 0.22 TCGA-HU-A4G8-01 7 803553 803553 T C HEATR2 Silent p.L575L 0.23 TCGA-HU-A4G8-01 7 82579273 82579273 T C PCLO Missense_Mutation p.D3544G 0.23 unknown(0) TCGA-HU-A4G8-01 7 91632321 91632321 T C AKAP9 Silent p.G1030G 0.20 TCGA-HU-A4G8-01 7 91737940 91737940 A G AKAP9 Missense_Mutation p.I3893M 0.17 benign(0.203) TCGA-HU-A4G8-01 7 92735257 92735258 - T SAMD9 Frame_Shift_Ins p.E52Rfs*5 0.18 TCGA-HU-A4G8-01 7 94185017 94185017 T - CASD1 Frame_Shift_Del p.C783Vfs*21 0.24 TCGA-HU-A4G8-01 7 943803 943803 T C ADAP1 Missense_Mutation p.N203S 0.32 tolerated(0.24) benign(0.214) TCGA-HU-A4G8-01 7 98609825 98609825 C A TRRAP Silent p.S3809S 0.28 TCGA-HU-A4G8-01 8 100733153 100733153 G T VPS13B Missense_Mutation p.G2335W 0.22 deleterious(0) probably_damaging(0.979) TCGA-HU-A4G8-01 8 102701588 102701588 C T NCALD Silent p.P177P 0.17 TCGA-HU-A4G8-01 8 105264125 105264125 T C RIMS2 3'Flank 0.29 TCGA-HU-A4G8-01 8 10584134 10584134 T C SOX7 Missense_Mutation p.Y146C 0.13 deleterious(0) probably_damaging(0.999) TCGA-HU-A4G8-01 8 110478937 110478937 G A PKHD1L1 Silent p.A2848A 0.24 TCGA-HU-A4G8-01 8 110587966 110587966 T C SYBU Silent p.E387E 0.24 TCGA-HU-A4G8-01 8 113314144 113314144 G T CSMD3 Missense_Mutation p.T2773N 0.19 tolerated(0.06) probably_damaging(0.992) TCGA-HU-A4G8-01 8 11683576 11683576 G A FDFT1 Missense_Mutation p.R185H 0.16 tolerated(0.06) benign(0.137) TCGA-HU-A4G8-01 8 117868981 117868981 C T RAD21 Missense_Mutation p.G240S 0.14 tolerated(0.16) benign(0.216) TCGA-HU-A4G8-01 8 121705999 121705999 G A SNTB1 Missense_Mutation p.R241W 0.23 deleterious(0.02) possibly_damaging(0.586) TCGA-HU-A4G8-01 8 123966246 123966246 A G ZHX2 Silent p.A832A 0.22 TCGA-HU-A4G8-01 8 125083872 125083872 G A FER1L6 Silent p.A1364A 0.17 TCGA-HU-A4G8-01 8 125463683 125463683 G A TRMT12 Missense_Mutation p.R172H 0.17 deleterious(0) probably_damaging(0.996) TCGA-HU-A4G8-01 8 126087249 126087249 G C KIAA0196 Silent p.V323V 0.11 TCGA-HU-A4G8-01 8 12957359 12957359 G - DLC1 Frame_Shift_Del p.S830Rfs*7 0.15 TCGA-HU-A4G8-01 8 132002689 132002689 G A ADCY8 Missense_Mutation p.R354W 0.19 deleterious(0) probably_damaging(0.993) TCGA-HU-A4G8-01 8 133150209 133150209 G A KCNQ3 Silent p.Y541Y 0.19 TCGA-HU-A4G8-01 8 133920431 133920431 G A TG Missense_Mutation p.R1283Q 0.17 tolerated(0.06) benign(0.146) TCGA-HU-A4G8-01 8 141567270 141567270 C A AGO2 Missense_Mutation p.R315M 0.18 tolerated(0.23) possibly_damaging(0.823) TCGA-HU-A4G8-01 8 142450394 142450394 C T CTD-3064M3.7 3'Flank 0.21 TCGA-HU-A4G8-01 8 143570761 143570761 C T BAI1 Missense_Mutation p.R865C 0.17 tolerated(0.06) possibly_damaging(0.898) TCGA-HU-A4G8-01 8 143832520 143832520 A G LYPD2 Missense_Mutation p.C43R 0.20 deleterious(0) probably_damaging(0.995) TCGA-HU-A4G8-01 8 144590005 144590005 A G ZC3H3 Silent p.I542I 0.18 TCGA-HU-A4G8-01 8 144620682 144620682 C T ZC3H3 Silent p.P285P 0.21 TCGA-HU-A4G8-01 8 144808238 144808238 G A FAM83H Silent p.R1131R 0.24 TCGA-HU-A4G8-01 8 144812611 144812611 C T FAM83H Missense_Mutation p.A48T 0.16 tolerated(0.27) benign(0.057) TCGA-HU-A4G8-01 8 144891828 144891828 C T SCRIB Missense_Mutation p.V531I 0.21 benign(0.075) TCGA-HU-A4G8-01 8 144995247 144995247 G A PLEC Silent p.F3051F 0.20 TCGA-HU-A4G8-01 8 144997573 144997573 T C PLEC Missense_Mutation p.E2312G 0.20 probably_damaging(0.995) TCGA-HU-A4G8-01 8 145095835 145095835 T C SPATC1 Missense_Mutation p.V378A 0.16 tolerated(0.6) benign(0) TCGA-HU-A4G8-01 8 145580025 145580025 C T FBXL6 Missense_Mutation p.R387H 0.19 deleterious(0) benign(0.027) TCGA-HU-A4G8-01 8 145620725 145620726 AT - CPSF1 Frame_Shift_Del p.Y1007* 0.16 TCGA-HU-A4G8-01 8 145736246 145736246 G A MFSD3 Missense_Mutation p.G342E 0.17 deleterious(0.01) benign(0.275) TCGA-HU-A4G8-01 8 146033518 146033518 G A ZNF517 Missense_Mutation p.G406D 0.20 deleterious(0.04) benign(0.037) TCGA-HU-A4G8-01 8 1496811 1496811 G A DLGAP2 5'UTR 0.18 TCGA-HU-A4G8-01 8 1497106 1497106 C T DLGAP2 Missense_Mutation p.R83W 0.16 deleterious(0) probably_damaging(0.999) TCGA-HU-A4G8-01 8 15967675 15967675 A G MSR1 Silent p.S425S 0.16 TCGA-HU-A4G8-01 8 22474994 22474994 G T CCAR2 Missense_Mutation p.R636L 0.14 tolerated(0.31) benign(0.017) TCGA-HU-A4G8-01 8 22864481 22864481 G A RHOBTB2 Silent p.P263P 0.17 TCGA-HU-A4G8-01 8 23190934 23190934 G A LOXL2 Missense_Mutation p.R316W 0.16 deleterious(0) benign(0.38) TCGA-HU-A4G8-01 8 25258582 25258582 G A DOCK5 Silent p.L1642L 0.19 TCGA-HU-A4G8-01 8 25296837 25296837 G A KCTD9 Missense_Mutation p.R153C 0.10 deleterious(0) probably_damaging(0.964) TCGA-HU-A4G8-01 8 27650255 27650255 A C ESCO2 Missense_Mutation p.K475T 0.38 deleterious(0) probably_damaging(0.912) TCGA-HU-A4G8-01 8 2832016 2832016 G A CSMD1 Silent p.C2899C 0.15 TCGA-HU-A4G8-01 8 30511074 30511074 T - GTF2E2 Frame_Shift_Del p.K14Nfs*8 0.14 TCGA-HU-A4G8-01 8 30699601 30699601 T - TEX15 Frame_Shift_Del p.K2311Nfs*6 0.14 TCGA-HU-A4G8-01 8 30704079 30704079 C A TEX15 Nonsense_Mutation p.G819* 0.19 TCGA-HU-A4G8-01 8 3253799 3253799 A T CSMD1 Missense_Mutation p.L837H 0.44 probably_damaging(1) TCGA-HU-A4G8-01 8 36675233 36675233 G A KCNU1 Missense_Mutation p.R354H 0.33 tolerated(1) benign(0.01) TCGA-HU-A4G8-01 8 36692338 36692338 A T KCNU1 Missense_Mutation p.N416I 0.28 deleterious(0) possibly_damaging(0.807) TCGA-HU-A4G8-01 8 36788639 36788639 C T KCNU1 Silent p.H969H 0.17 TCGA-HU-A4G8-01 8 37822792 37822792 C T ADRB3 Missense_Mutation p.R399Q 0.25 tolerated_low_confidence(0.61) benign(0.002) TCGA-HU-A4G8-01 8 38194920 38194920 G A WHSC1L1 Silent p.G271G 0.20 TCGA-HU-A4G8-01 8 38831767 38831767 G A HTRA4 5'UTR 0.25 TCGA-HU-A4G8-01 8 38839286 38839286 G T HTRA4 Nonsense_Mutation p.G372* 0.21 TCGA-HU-A4G8-01 8 38934828 38934828 G A ADAM9 Silent p.T593T 0.16 TCGA-HU-A4G8-01 8 41456803 41456803 A C AGPAT6 Missense_Mutation p.S49R 0.17 deleterious(0.05) benign(0) TCGA-HU-A4G8-01 8 41504781 41504781 C T NKX6-3 Missense_Mutation p.A32T 0.15 tolerated_low_confidence(0.29) possibly_damaging(0.695) TCGA-HU-A4G8-01 8 41561606 41561606 C T ANK1 Missense_Mutation p.V783M 0.14 deleterious(0) probably_damaging(0.994) TCGA-HU-A4G8-01 8 48732013 48732013 A G PRKDC Missense_Mutation p.V3131A 0.21 possibly_damaging(0.615) TCGA-HU-A4G8-01 8 48815346 48815346 C T PRKDC Missense_Mutation p.V1018M 0.28 probably_damaging(0.981) TCGA-HU-A4G8-01 8 48883979 48883979 A - MCM4 Frame_Shift_Del p.T629Qfs*18 0.10 TCGA-HU-A4G8-01 8 53853263 53853263 C T NPBWR1 Missense_Mutation p.P266S 0.27 deleterious(0) probably_damaging(1) TCGA-HU-A4G8-01 8 54141919 54141919 G A OPRK1 Nonsense_Mutation p.R361* 0.21 TCGA-HU-A4G8-01 8 54142147 54142147 C T OPRK1 Missense_Mutation p.V285I 0.15 tolerated(0.68) benign(0.023) TCGA-HU-A4G8-01 8 54791966 54791966 C - RGS20 Frame_Shift_Del p.L107Cfs*41 0.17 TCGA-HU-A4G8-01 8 55371807 55371807 C T SOX17 Missense_Mutation p.A166V 0.29 tolerated(0.35) benign(0.001) TCGA-HU-A4G8-01 8 61765442 61765442 G A CHD7 Missense_Mutation p.R2053Q 0.14 probably_damaging(0.984) TCGA-HU-A4G8-01 8 6357399 6357399 C T MCPH1 Silent p.H721H 0.16 TCGA-HU-A4G8-01 8 6360508 6360508 G A ANGPT2 3'UTR 0.18 TCGA-HU-A4G8-01 8 67047354 67047354 G A TRIM55 Silent p.Q157Q 0.26 TCGA-HU-A4G8-01 8 67488453 67488453 T - MYBL1 Frame_Shift_Del p.N420Tfs*13 0.25 TCGA-HU-A4G8-01 8 70476323 70476323 G A SULF1 Missense_Mutation p.R38Q 0.16 deleterious(0) benign(0.266) TCGA-HU-A4G8-01 8 73480455 73480457 AGA - KCNB2 In_Frame_Del p.E163del 0.10 TCGA-HU-A4G8-01 8 75227517 75227517 G A JPH1 Missense_Mutation p.R240C 0.18 tolerated(0.13) benign(0.11) TCGA-HU-A4G8-01 8 77617140 77617140 A - ZFHX4 Frame_Shift_Del p.R274Gfs*5 0.16 TCGA-HU-A4G8-01 8 79590798 79590798 A - ZC2HC1A Frame_Shift_Del p.K33Nfs*32 0.15 TCGA-HU-A4G8-01 8 82356736 82356736 G A PMP2 Missense_Mutation p.A116V 0.15 tolerated(1) benign(0.001) TCGA-HU-A4G8-01 8 82627068 82627068 G A ZFAND1 Missense_Mutation p.A110V 0.20 tolerated(0.08) benign(0.008) TCGA-HU-A4G8-01 8 87229781 87229781 G A SLC7A13 Missense_Mutation p.T366M 0.12 tolerated(0.19) benign(0.041) TCGA-HU-A4G8-01 8 8747799 8747799 G C MFHAS1 Missense_Mutation p.P924A 0.20 deleterious(0.01) probably_damaging(0.994) TCGA-HU-A4G8-01 8 90958413 90958413 T C NBN Missense_Mutation p.I675M 0.20 tolerated(0.18) benign(0.19) TCGA-HU-A4G8-01 8 91929840 91929840 C A NECAB1 Missense_Mutation p.Q160K 0.40 deleterious(0.01) possibly_damaging(0.531) TCGA-HU-A4G8-01 8 95164109 95164109 C A CDH17 Missense_Mutation p.G595C 0.17 deleterious(0) probably_damaging(0.998) TCGA-HU-A4G8-01 8 97243309 97243310 - T UQCRB 3'UTR 0.17 TCGA-HU-A4G8-01 9 100897159 100897159 G A CORO2A Missense_Mutation p.R133C 0.37 deleterious(0.02) probably_damaging(1) TCGA-HU-A4G8-01 9 102590573 102590573 G T NR4A3 Missense_Mutation p.L94F 0.23 tolerated(0.71) possibly_damaging(0.898) TCGA-HU-A4G8-01 9 103348453 103348453 G A MURC Missense_Mutation p.R272H 0.20 tolerated(0.36) benign(0.001) TCGA-HU-A4G8-01 9 104170526 104170526 G A ZNF189 Missense_Mutation p.R159H 0.20 tolerated(0.61) benign(0.219) TCGA-HU-A4G8-01 9 107289337 107289337 C T OR13C4 Missense_Mutation p.D52N 0.19 deleterious(0.02) probably_damaging(0.998) TCGA-HU-A4G8-01 9 108151462 108151463 AC - SLC44A1 3'UTR 0.35 TCGA-HU-A4G8-01 9 109690191 109690191 G A ZNF462 Missense_Mutation p.R1333Q 0.22 probably_damaging(0.916) TCGA-HU-A4G8-01 9 109701240 109701240 G A ZNF462 Missense_Mutation p.M2093I 0.25 benign(0.204) TCGA-HU-A4G8-01 9 111640275 111640275 C A IKBKAP Silent p.P1285P 0.24 TCGA-HU-A4G8-01 9 112686061 112686061 T G PALM2-AKAP2 Missense_Mutation p.S102A 0.24 tolerated_low_confidence(0.22) benign(0.074) TCGA-HU-A4G8-01 9 113312184 113312184 G A SVEP1 Silent p.Y244Y 0.14 TCGA-HU-A4G8-01 9 114304378 114304378 G T ZNF483 Missense_Mutation p.R388M 0.26 deleterious(0) possibly_damaging(0.507) TCGA-HU-A4G8-01 9 115818897 115818897 C T ZFP37 Silent p.T24T 0.23 TCGA-HU-A4G8-01 9 115948583 115948583 G A FKBP15 Nonsense_Mutation p.Q482* 0.38 TCGA-HU-A4G8-01 9 115962135 115962135 C T FKBP15 Missense_Mutation p.A203T 0.15 deleterious(0.03) benign(0.364) TCGA-HU-A4G8-01 9 116835296 116835296 C T AMBP Silent p.P155P 0.29 TCGA-HU-A4G8-01 9 117827093 117827093 T C TNC Missense_Mutation p.Q1107R 0.27 deleterious(0.03) probably_damaging(0.997) TCGA-HU-A4G8-01 9 118118 118118 A G FOXD4 Translation_Start_Site p.M1? 0.09 deleterious(0) probably_damaging(0.983) TCGA-HU-A4G8-01 9 118950108 118950108 A G PAPPA Missense_Mutation p.D364G 0.23 tolerated(0.24) benign(0) TCGA-HU-A4G8-01 9 121929282 121929282 T - BRINP1 3'UTR 0.19 TCGA-HU-A4G8-01 9 121930156 121930156 G A BRINP1 Missense_Mutation p.R498C 0.27 deleterious(0) probably_damaging(0.973) TCGA-HU-A4G8-01 9 123298792 123298792 C T CDK5RAP2 Missense_Mutation p.A174T 0.19 deleterious(0.01) possibly_damaging(0.499) TCGA-HU-A4G8-01 9 125288680 125288680 G C OR1N1 Missense_Mutation p.A298G 0.20 deleterious(0.02) benign(0.011) TCGA-HU-A4G8-01 9 125563254 125563254 A G OR1K1 Missense_Mutation p.M285V 0.26 deleterious(0.02) benign(0.005) TCGA-HU-A4G8-01 9 127764275 127764275 G A SCAI Silent p.G394G 0.21 TCGA-HU-A4G8-01 9 129184183 129184183 G A MVB12B Missense_Mutation p.R238Q 0.18 tolerated(0.06) possibly_damaging(0.789) TCGA-HU-A4G8-01 9 129641782 129641783 TA - ZBTB34 Frame_Shift_Del p.C32* 0.19 TCGA-HU-A4G8-01 9 130271341 130271341 A G FAM129B Missense_Mutation p.S411P 0.22 tolerated(0.45) benign(0) TCGA-HU-A4G8-01 9 130506877 130506877 G A SH2D3C Missense_Mutation p.T589M 0.24 deleterious(0.01) probably_damaging(0.998) TCGA-HU-A4G8-01 9 131112801 131112801 G A SLC27A4 Missense_Mutation p.R275H 0.44 tolerated(0.57) probably_damaging(0.946) TCGA-HU-A4G8-01 9 131388887 131388887 G A SPTAN1 Missense_Mutation p.R2166H 0.18 deleterious(0.02) benign(0.008) TCGA-HU-A4G8-01 9 131515105 131515105 C T ZER1 Missense_Mutation p.R257H 0.21 tolerated(0.21) benign(0) TCGA-HU-A4G8-01 9 131733236 131733236 A T NUP188 Missense_Mutation p.D371V 0.21 deleterious(0.03) benign(0.069) TCGA-HU-A4G8-01 9 131771467 131771467 G - SH3GLB2 Frame_Shift_Del p.P333Lfs*111 0.27 TCGA-HU-A4G8-01 9 131862842 131862842 C A CRAT Missense_Mutation p.G311V 0.28 deleterious(0) probably_damaging(1) TCGA-HU-A4G8-01 9 133329755 133329755 A - ASS1 Frame_Shift_Del p.K58Rfs*82 0.25 TCGA-HU-A4G8-01 9 133542071 133542071 C A PRDM12 Silent p.L100L 0.28 TCGA-HU-A4G8-01 9 133932467 133932467 G - LAMC3 Frame_Shift_Del p.G699Vfs*185 0.20 TCGA-HU-A4G8-01 9 134165403 134165403 C T PPAPDC3 Missense_Mutation p.R7W 0.17 deleterious(0) probably_damaging(0.994) TCGA-HU-A4G8-01 9 134321811 134321811 G A PRRC2B Missense_Mutation p.G213S 0.29 deleterious(0) probably_damaging(0.999) TCGA-HU-A4G8-01 9 134350981 134350981 C T PRRC2B Silent p.N1155N 0.27 TCGA-HU-A4G8-01 9 134354732 134354732 G A PRRC2B Missense_Mutation p.V1618M 0.32 tolerated(0.05) benign(0.022) TCGA-HU-A4G8-01 9 134384333 134384333 T C POMT1 Silent p.L155L 0.22 TCGA-HU-A4G8-01 9 135863633 135863633 C T GFI1B Silent p.S96S 0.21 TCGA-HU-A4G8-01 9 135864465 135864465 C T GFI1B Silent p.H176H 0.20 TCGA-HU-A4G8-01 9 136217531 136217531 G A RPL7A Missense_Mutation p.R192H 0.24 tolerated(0.62) benign(0.014) TCGA-HU-A4G8-01 9 136653484 136653484 C T VAV2 Missense_Mutation p.V467I 0.21 tolerated(0.65) benign(0.004) TCGA-HU-A4G8-01 9 137007769 137007769 C T WDR5 Silent p.S152S 0.27 TCGA-HU-A4G8-01 9 138395682 138395682 G A MRPS2 Silent p.T198T 0.23 TCGA-HU-A4G8-01 9 138586271 138586271 G A SOHLH1 Missense_Mutation p.T303M 0.20 tolerated(0.09) possibly_damaging(0.573) TCGA-HU-A4G8-01 9 138590922 138590922 G A SOHLH1 Missense_Mutation p.S39L 0.25 tolerated(0.08) possibly_damaging(0.776) TCGA-HU-A4G8-01 9 139286540 139286540 C T SNAPC4 Missense_Mutation p.A277T 0.23 tolerated(0.11) possibly_damaging(0.666) TCGA-HU-A4G8-01 9 139401320 139401320 C T NOTCH1 Missense_Mutation p.G1250D 0.19 tolerated(0.08) probably_damaging(1) TCGA-HU-A4G8-01 9 139904435 139904435 C A ABCA2 Silent p.R2165R 0.22 TCGA-HU-A4G8-01 9 139915842 139915842 A G ABCA2 Splice_Site p.X299_splice 0.16 TCGA-HU-A4G8-01 9 140033928 140033928 G A GRIN1 5'Flank 0.22 TCGA-HU-A4G8-01 9 140080740 140080740 C T ANAPC2 Missense_Mutation p.R270Q 0.24 tolerated(0.18) benign(0.001) TCGA-HU-A4G8-01 9 141016148 141016148 G T CACNA1B Silent p.L2239L 0.17 TCGA-HU-A4G8-01 9 14307161 14307161 A C NFIB Missense_Mutation p.L130R 0.25 deleterious(0) probably_damaging(0.998) TCGA-HU-A4G8-01 9 15779035 15779035 C T CCDC171 Missense_Mutation p.R990C 0.17 deleterious(0.03) probably_damaging(0.998) TCGA-HU-A4G8-01 9 19316781 19316781 T C DENND4C Missense_Mutation p.I584T 0.31 deleterious(0) probably_damaging(0.944) TCGA-HU-A4G8-01 9 2088615 2088615 T C SMARCA2 Splice_Site p.X961_splice 0.30 TCGA-HU-A4G8-01 9 20912931 20912931 A - FOCAD Frame_Shift_Del p.S931Afs*11 0.20 TCGA-HU-A4G8-01 9 21971088 21971089 - A CDKN2A Frame_Shift_Ins p.L91Pfs*29 0.20 TCGA-HU-A4G8-01 9 21974679 21974679 G A CDKN2A Nonsense_Mutation p.Q50* 0.25 TCGA-HU-A4G8-01 9 312086 312086 G T DOCK8 Missense_Mutation p.D221Y 0.30 deleterious(0) possibly_damaging(0.839) TCGA-HU-A4G8-01 9 32633058 32633058 C T TAF1L Silent p.R840R 0.16 TCGA-HU-A4G8-01 9 34343338 34343338 G A NUDT2 Missense_Mutation p.R115H 0.23 deleterious(0.01) probably_damaging(0.911) TCGA-HU-A4G8-01 9 34371158 34371158 C T KIAA1161 Missense_Mutation p.R561H 0.37 tolerated(0.16) benign(0.001) TCGA-HU-A4G8-01 9 35059577 35059577 A G VCP Silent p.L639L 0.37 TCGA-HU-A4G8-01 9 35102160 35102160 C T STOML2 Missense_Mutation p.R72Q 0.22 tolerated(0.09) benign(0.073) TCGA-HU-A4G8-01 9 35616088 35616088 C T CD72 Silent p.A180A 0.21 TCGA-HU-A4G8-01 9 35719120 35719120 G A TLN1 Missense_Mutation p.A616V 0.27 tolerated(0.12) benign(0.262) TCGA-HU-A4G8-01 9 36246258 36246258 C T GNE Missense_Mutation p.R160Q 0.21 tolerated(0.23) probably_damaging(0.988) TCGA-HU-A4G8-01 9 38016116 38016116 C T SHB Missense_Mutation p.D244N 0.21 tolerated(0.06) possibly_damaging(0.657) TCGA-HU-A4G8-01 9 4662417 4662417 C T PPAPDC2 Silent p.G14G 0.42 TCGA-HU-A4G8-01 9 72131493 72131493 C T APBA1 Missense_Mutation p.G212S 0.27 tolerated_low_confidence(0.17) benign(0.044) TCGA-HU-A4G8-01 9 72131519 72131519 T A APBA1 Missense_Mutation p.D203V 0.32 deleterious_low_confidence(0) possibly_damaging(0.479) TCGA-HU-A4G8-01 9 77112844 77112844 G A RORB 5'UTR 0.31 TCGA-HU-A4G8-01 9 79635658 79635658 C T FOXB2 Missense_Mutation p.P363L 0.38 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-HU-A4G8-01 9 80858424 80858424 G A CEP78 Missense_Mutation p.R217H 0.22 deleterious(0) probably_damaging(0.996) TCGA-HU-A4G8-01 9 80942970 80942970 T C PSAT1 Silent p.C291C 0.30 TCGA-HU-A4G8-01 9 86495292 86495292 G T KIF27 Missense_Mutation p.L855I 0.20 tolerated(0.05) benign(0.272) TCGA-HU-A4G8-01 9 86506302 86506302 C T KIF27 Missense_Mutation p.A573T 0.15 tolerated(0.4) benign(0.003) TCGA-HU-A4G8-01 9 90499521 90499521 T C SPATA31E1 Missense_Mutation p.L127P 0.28 deleterious(0) probably_damaging(0.968) TCGA-HU-A4G8-01 9 94495678 94495678 G A ROR2 Silent p.D221D 0.24 TCGA-HU-A4G8-01 9 95947742 95947742 G C WNK2 Missense_Mutation p.E177D 0.18 unknown(0) TCGA-HU-A4G8-01 9 96055229 96055229 G A WNK2 Missense_Mutation p.V1865M 0.21 unknown(0) TCGA-HU-A4G8-01 9 96291730 96291730 G A FAM120A Silent p.S534S 0.23 TCGA-HU-A4G8-01 9 97063084 97063084 T C ZNF169 Missense_Mutation p.V415A 0.15 tolerated(0.07) benign(0.003) TCGA-HU-A4G8-01 9 97401630 97401630 C T FBP1 Intron 0.33 TCGA-HU-A4G8-01 9 977277 977277 C T DMRT3 Silent p.R92R 0.35 TCGA-HU-A4G8-01 X 100169249 100169249 T C XKRX 3'UTR 0.25 TCGA-HU-A4G8-01 X 101624731 101624731 C T NXF2B Intron 0.30 TCGA-HU-A4G8-01 X 102755722 102755722 G - RAB40A 5'UTR 0.16 TCGA-HU-A4G8-01 X 103432971 103432971 G A FAM199X Missense_Mutation p.R327Q 0.20 deleterious(0.03) probably_damaging(0.986) TCGA-HU-A4G8-01 X 105011743 105011743 A - IL1RAPL2 3'UTR 0.25 TCGA-HU-A4G8-01 X 106038898 106038898 C T RNF128 Silent p.D414D 0.18 TCGA-HU-A4G8-01 X 109561246 109561246 G - AMMECR1 Frame_Shift_Del p.S19Lfs*28 0.31 TCGA-HU-A4G8-01 X 110574229 110574229 G A DCX Silent p.G364G 0.19 TCGA-HU-A4G8-01 X 111155847 111155847 C T TRPC5 Missense_Mutation p.R191H 0.23 deleterious(0) probably_damaging(1) TCGA-HU-A4G8-01 X 118717322 118717322 A G UBE2A 3'UTR 0.31 TCGA-HU-A4G8-01 X 119077561 119077561 G A NKAP Missense_Mutation p.P3L 0.24 deleterious(0.01) possibly_damaging(0.886) TCGA-HU-A4G8-01 X 123217306 123217306 C A STAG2 Missense_Mutation p.P987Q 0.18 tolerated(0.32) benign(0.151) TCGA-HU-A4G8-01 X 125685932 125685932 C T DCAF12L1 Nonsense_Mutation p.W220* 0.26 TCGA-HU-A4G8-01 X 128914080 128914080 C T SASH3 Missense_Mutation p.R3C 0.26 deleterious(0) possibly_damaging(0.877) TCGA-HU-A4G8-01 X 129305930 129305930 G A RAB33A 5'UTR 0.25 TCGA-HU-A4G8-01 X 129318570 129318570 C T RAB33A Silent p.N190N 0.23 TCGA-HU-A4G8-01 X 129518998 129518998 C A GPR119 Nonsense_Mutation p.G142* 0.26 TCGA-HU-A4G8-01 X 130419315 130419315 C T IGSF1 Missense_Mutation p.A169T 0.18 tolerated(0.54) benign(0.011) TCGA-HU-A4G8-01 X 13337421 13337421 T - ATXN3L Frame_Shift_Del p.V212Yfs*24 0.19 TCGA-HU-A4G8-01 X 13764538 13764538 A C OFD1 Missense_Mutation p.E206D 0.22 tolerated(0.08) benign(0.188) TCGA-HU-A4G8-01 X 139586638 139586638 G A SOX3 Silent p.R196R 0.23 TCGA-HU-A4G8-01 X 140270755 140270755 G T LDOC1 3'UTR 0.15 TCGA-HU-A4G8-01 X 140785613 140785613 A G SPANXD 3'UTR 0.12 TCGA-HU-A4G8-01 X 1428517 1428517 C T CSF2RA 3'UTR 0.27 TCGA-HU-A4G8-01 X 14863039 14863040 - A FANCB Frame_Shift_Ins p.L622Ffs*36 0.24 TCGA-HU-A4G8-01 X 150907032 150907032 C T CNGA2 Missense_Mutation p.A26V 0.17 tolerated_low_confidence(0.21) benign(0) TCGA-HU-A4G8-01 X 151815583 151815583 C T GABRQ Missense_Mutation p.R161C 0.43 deleterious(0.03) benign(0.411) TCGA-HU-A4G8-01 X 152482579 152482579 G A MAGEA1 Silent p.F144F 0.18 TCGA-HU-A4G8-01 X 152710780 152710780 G A TREX2 Missense_Mutation p.R37C 0.14 deleterious(0) probably_damaging(1) TCGA-HU-A4G8-01 X 152845747 152845747 G A ATP2B3 Silent p.T1218T 0.20 TCGA-HU-A4G8-01 X 153059838 153059838 T C SSR4 5'UTR 0.23 TCGA-HU-A4G8-01 X 153128217 153128217 G A L1CAM Silent p.F1225F 0.18 TCGA-HU-A4G8-01 X 153135085 153135085 C T L1CAM Missense_Mutation p.R386H 0.16 tolerated(0.27) benign(0.003) TCGA-HU-A4G8-01 X 153588685 153588685 C T FLNA Missense_Mutation p.A1160T 0.38 tolerated(0.06) benign(0.175) TCGA-HU-A4G8-01 X 153660654 153660654 G A ATP6AP1 Missense_Mutation p.V136I 0.24 deleterious(0.01) probably_damaging(0.996) TCGA-HU-A4G8-01 X 153696202 153696202 G - PLXNA3 Frame_Shift_Del p.G1228Vfs*58 0.13 TCGA-HU-A4G8-01 X 154115595 154115595 G A F8A1 Missense_Mutation p.E316K 0.20 deleterious(0.01) possibly_damaging(0.502) TCGA-HU-A4G8-01 X 154159624 154159624 C T F8 Missense_Mutation p.R814Q 0.16 tolerated(0.09) benign(0.002) TCGA-HU-A4G8-01 X 18192292 18192292 A G BEND2 Silent p.G613G 0.21 TCGA-HU-A4G8-01 X 20073892 20073892 C T MAP7D2 Intron 0.28 TCGA-HU-A4G8-01 X 21674642 21674642 G A KLHL34 Missense_Mutation p.A422V 0.23 tolerated(1) benign(0.002) TCGA-HU-A4G8-01 X 26212529 26212529 G A MAGEB6 Missense_Mutation p.R189H 0.22 tolerated(0.3) benign(0) TCGA-HU-A4G8-01 X 30236743 30236743 C T MAGEB2 Missense_Mutation p.R16C 0.16 tolerated(0.1) benign(0.09) TCGA-HU-A4G8-01 X 302619 302619 G A PPP2R3B Nonsense_Mutation p.R362* 0.22 TCGA-HU-A4G8-01 X 3240888 3240888 T C MXRA5 Silent p.A946A 0.24 TCGA-HU-A4G8-01 X 41712439 41712439 G A CASK Missense_Mutation p.T34I 0.22 deleterious(0) probably_damaging(0.971) TCGA-HU-A4G8-01 X 44732756 44732756 G - KDM6A 5'Flank 0.12 TCGA-HU-A4G8-01 X 46913989 46913989 C T JADE3 Nonsense_Mutation p.R468* 0.19 TCGA-HU-A4G8-01 X 46918475 46918475 G T JADE3 Missense_Mutation p.R823M 0.23 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-HU-A4G8-01 X 47038780 47038780 C T RBM10 Missense_Mutation p.R263W 0.59 deleterious(0.01) possibly_damaging(0.798) TCGA-HU-A4G8-01 X 47775019 47775019 G A ZNF81 Missense_Mutation p.R325K 0.32 tolerated(0.09) benign(0.015) TCGA-HU-A4G8-01 X 48117223 48117223 A - SSX1 Frame_Shift_Del p.K39Rfs*2 0.25 TCGA-HU-A4G8-01 X 48374499 48374499 C T PORCN Missense_Mutation p.R380W 0.17 deleterious(0.01) possibly_damaging(0.719) TCGA-HU-A4G8-01 X 48689686 48689686 C T PCSK1N Missense_Mutation p.R256H 0.20 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-HU-A4G8-01 X 48826076 48826076 G A KCND1 Silent p.I201I 0.18 TCGA-HU-A4G8-01 X 50052225 50052225 G A CCNB3 Silent p.L352L 0.27 TCGA-HU-A4G8-01 X 50350982 50350982 G A SHROOM4 Missense_Mutation p.R1054C 0.23 deleterious(0) probably_damaging(0.994) TCGA-HU-A4G8-01 X 53231107 53231107 G - KDM5C Frame_Shift_Del p.R599Vfs*60 0.13 TCGA-HU-A4G8-01 X 53426556 53426556 C T SMC1A Silent p.E839E 0.11 TCGA-HU-A4G8-01 X 53565987 53565987 C T HUWE1 Missense_Mutation p.S3896N 0.30 unknown(0) TCGA-HU-A4G8-01 X 54971960 54971960 A G PFKFB1 Missense_Mutation p.M337T 0.35 possibly_damaging(0.887) TCGA-HU-A4G8-01 X 55479176 55479176 A C MAGEH1 Silent p.G123G 0.29 TCGA-HU-A4G8-01 X 64743993 64743993 G A LAS1L Missense_Mutation p.R415W 0.28 deleterious(0) probably_damaging(0.955) TCGA-HU-A4G8-01 X 68060322 68060323 - G EFNB1 Frame_Shift_Ins p.S292Qfs*27 0.12 TCGA-HU-A4G8-01 X 70367787 70367787 T C NLGN3 Missense_Mutation p.L63P 0.27 deleterious(0) probably_damaging(1) TCGA-HU-A4G8-01 X 70467211 70467211 G A ZMYM3 Silent p.P766P 0.33 TCGA-HU-A4G8-01 X 70518589 70518589 C - NONO Frame_Shift_Del p.P403Lfs*17 0.18 TCGA-HU-A4G8-01 X 70523125 70523125 C A ITGB1BP2 Missense_Mutation p.L111M 0.27 tolerated(0.69) possibly_damaging(0.603) TCGA-HU-A4G8-01 X 70674047 70674047 C T TAF1 Missense_Mutation p.A1614V 0.11 deleterious(0) probably_damaging(0.958) TCGA-HU-A4G8-01 X 70777069 70777069 A G OGT Missense_Mutation p.I449V 0.28 tolerated(0.11) possibly_damaging(0.504) TCGA-HU-A4G8-01 X 70787461 70787462 - T OGT Frame_Shift_Ins p.S903Ffs*6 0.19 TCGA-HU-A4G8-01 X 70823607 70823607 C T ACRC Silent p.D160D 0.23 TCGA-HU-A4G8-01 X 73042890 73042890 T - XIST RNA 0.18 TCGA-HU-A4G8-01 X 73066246 73066246 A G XIST RNA 0.25 TCGA-HU-A4G8-01 X 74296377 74296377 G A ABCB7 Missense_Mutation p.A190V 0.16 tolerated(0.07) benign(0.272) TCGA-HU-A4G8-01 X 76918921 76918921 T - ATRX Frame_Shift_Del p.K1357Rfs*18 0.19 TCGA-HU-A4G8-01 X 83129239 83129239 A G CYLC1 Missense_Mutation p.D508G 0.28 tolerated(0.14) possibly_damaging(0.549) TCGA-HU-A4G8-01 X 86877405 86877405 G A KLHL4 Silent p.L373L 0.25 TCGA-HU-A4G8-01 X 86890617 86890617 C A KLHL4 Nonsense_Mutation p.Y589* 0.15 TCGA-HU-A4G8-01 X 91090524 91090524 G A PCDH11X Silent p.T7T 0.23 TCGA-HU-A4G8-01 X 91132050 91132050 C A PCDH11X Missense_Mutation p.L271I 0.25 deleterious(0.03) probably_damaging(1) TCGA-HU-A4G9-01 10 102505874 102505874 C T PAX2 5'UTR 0.43 TCGA-HU-A4G9-01 10 102987446 102987446 G A LBX1 Missense_Mutation p.R143C 0.25 deleterious(0) probably_damaging(1) TCGA-HU-A4G9-01 10 104174786 104174786 T C PSD Missense_Mutation p.S320G 0.27 tolerated(0.07) benign(0.444) TCGA-HU-A4G9-01 10 104934693 104934693 C T NT5C2 Missense_Mutation p.R8Q 0.22 tolerated_low_confidence(0.1) benign(0.016) TCGA-HU-A4G9-01 10 105819448 105819448 T - COL17A1 Frame_Shift_Del p.E391Kfs*12 0.19 TCGA-HU-A4G9-01 10 1088622 1088622 G A IDI1 Nonsense_Mutation p.R163* 0.27 TCGA-HU-A4G9-01 10 1118155 1118155 C A WDR37 Silent p.S20S 0.21 TCGA-HU-A4G9-01 10 116020979 116020979 C A VWA2 Missense_Mutation p.P99H 0.26 deleterious(0) probably_damaging(0.986) TCGA-HU-A4G9-01 10 116057157 116057157 G A AFAP1L2 Missense_Mutation p.A710V 0.44 tolerated(0.25) benign(0.004) TCGA-HU-A4G9-01 10 126311936 126311936 C T FAM53B Missense_Mutation p.A382T 0.38 tolerated(0.39) benign(0.003) TCGA-HU-A4G9-01 10 126691652 126691652 C T CTBP2 Missense_Mutation p.A619T 0.26 deleterious(0.01) possibly_damaging(0.684) TCGA-HU-A4G9-01 10 127530326 127530326 G A DHX32 Missense_Mutation p.A510V 0.28 deleterious(0.04) probably_damaging(0.994) TCGA-HU-A4G9-01 10 131640510 131640510 G A EBF3 Silent p.S405S 0.27 TCGA-HU-A4G9-01 10 134218255 134218255 C - PWWP2B Frame_Shift_Del p.P86Lfs*100 0.27 TCGA-HU-A4G9-01 10 135083463 135083463 G A ADAM8 Missense_Mutation p.R601C 0.33 tolerated(0.06) possibly_damaging(0.886) TCGA-HU-A4G9-01 10 15290656 15290656 G A FAM171A1 Missense_Mutation p.R246W 0.31 deleterious(0) possibly_damaging(0.873) TCGA-HU-A4G9-01 10 21784510 21784510 A G CASC10 3'UTR 0.34 TCGA-HU-A4G9-01 10 21806800 21806800 G A SKIDA1 5'UTR 0.33 TCGA-HU-A4G9-01 10 22634743 22634743 C T SPAG6 Silent p.N39N 0.24 TCGA-HU-A4G9-01 10 27149919 27149919 A G ABI1 5'Flank 0.13 TCGA-HU-A4G9-01 10 27687763 27687763 A - PTCHD3 Frame_Shift_Del p.F588Lfs*18 0.14 TCGA-HU-A4G9-01 10 29775128 29775128 A G SVIL Silent p.Y1555Y 0.31 TCGA-HU-A4G9-01 10 32307245 32307245 T - KIF5B Frame_Shift_Del p.K813Rfs*62 0.15 TCGA-HU-A4G9-01 10 35928502 35928502 C T FZD8 Missense_Mutation p.R619H 0.26 deleterious(0) possibly_damaging(0.786) TCGA-HU-A4G9-01 10 43693537 43693537 G T RASGEF1A Missense_Mutation p.P380H 0.24 deleterious(0) probably_damaging(1) TCGA-HU-A4G9-01 10 44052231 44052231 A G ZNF239 Missense_Mutation p.C433R 0.34 deleterious(0) probably_damaging(1) TCGA-HU-A4G9-01 10 48438579 48438579 G A GDF10 Silent p.P44P 0.27 TCGA-HU-A4G9-01 10 49459733 49459733 G A FRMPD2 Silent p.G9G 0.30 TCGA-HU-A4G9-01 10 50819345 50819345 C A SLC18A3 Missense_Mutation p.L187M 0.22 deleterious(0.04) possibly_damaging(0.643) TCGA-HU-A4G9-01 10 50946253 50946253 T G OGDHL Missense_Mutation p.D792A 0.26 deleterious(0) probably_damaging(0.978) TCGA-HU-A4G9-01 10 54074080 54074080 G A DKK1 5'UTR 0.31 TCGA-HU-A4G9-01 10 61833851 61833851 G A ANK3 Missense_Mutation p.A2263V 0.20 benign(0.003) TCGA-HU-A4G9-01 10 64943307 64943307 A G JMJD1C Silent p.H2328H 0.29 TCGA-HU-A4G9-01 10 64967739 64967739 T C JMJD1C Silent p.P1230P 0.26 TCGA-HU-A4G9-01 10 70482243 70482243 T - CCAR1 5'UTR 0.28 TCGA-HU-A4G9-01 10 70733354 70733354 G - DDX21 Frame_Shift_Del p.V536Cfs*14 0.24 TCGA-HU-A4G9-01 10 71871427 71871427 C T H2AFY2 Silent p.L369L 0.31 TCGA-HU-A4G9-01 10 72358855 72358855 T C PRF1 Missense_Mutation p.T208A 0.21 deleterious(0.01) possibly_damaging(0.617) TCGA-HU-A4G9-01 10 75525559 75525560 - C SEC24C Frame_Shift_Ins p.Q459Pfs*17 0.26 TCGA-HU-A4G9-01 10 76790451 76790451 C T KAT6B Missense_Mutation p.R1957W 0.25 probably_damaging(0.997) TCGA-HU-A4G9-01 10 76797703 76797703 G A DUPD1 Missense_Mutation p.P185L 0.19 deleterious(0) probably_damaging(1) TCGA-HU-A4G9-01 10 77158990 77158990 C T ZNF503 Silent p.A486A 0.32 TCGA-HU-A4G9-01 10 88728342 88728342 A T ADIRF Missense_Mutation p.E14V 0.23 deleterious(0) benign(0.181) TCGA-HU-A4G9-01 10 92509261 92509261 G A HTR7 Silent p.S210S 0.27 TCGA-HU-A4G9-01 10 93600433 93600433 A G TNKS2 Missense_Mutation p.H548R 0.31 tolerated(0.22) possibly_damaging(0.672) TCGA-HU-A4G9-01 10 93617285 93617285 A G TNKS2 Missense_Mutation p.H1031R 0.37 deleterious(0) probably_damaging(0.994) TCGA-HU-A4G9-01 10 95931103 95931103 C T PLCE1 Silent p.V553V 0.38 TCGA-HU-A4G9-01 10 97916130 97916130 A - ZNF518A RNA 0.17 TCGA-HU-A4G9-01 10 97964352 97964352 G A BLNK Missense_Mutation p.R280C 0.31 deleterious(0) probably_damaging(1) TCGA-HU-A4G9-01 11 102743659 102743659 C T MMP12 RNA 0.46 TCGA-HU-A4G9-01 11 103908603 103908603 C T DDI1 Silent p.I351I 0.35 TCGA-HU-A4G9-01 11 104874011 104874011 T - CASP5 Frame_Shift_Del p.N191Ifs*8 0.42 TCGA-HU-A4G9-01 11 113220807 113220807 G A TTC12 Silent p.A389A 0.37 TCGA-HU-A4G9-01 11 113287588 113287588 C T DRD2 Missense_Mutation p.A177T 0.38 tolerated(1) benign(0.001) TCGA-HU-A4G9-01 11 12029972 12029972 T C DKK3 Missense_Mutation p.E53G 0.36 deleterious(0) probably_damaging(0.999) TCGA-HU-A4G9-01 11 120998812 120998812 G A TECTA Missense_Mutation p.R709Q 0.38 tolerated(0.15) possibly_damaging(0.778) TCGA-HU-A4G9-01 11 121475876 121475876 G A SORL1 Missense_Mutation p.G1569E 0.33 deleterious(0) probably_damaging(1) TCGA-HU-A4G9-01 11 126147471 126147471 C T FOXRED1 Nonsense_Mutation p.R450* 0.34 TCGA-HU-A4G9-01 11 129992283 129992283 A G APLP2 Missense_Mutation p.E266G 0.49 tolerated(0.09) benign(0.003) TCGA-HU-A4G9-01 11 130278693 130278693 C - ADAMTS8 Frame_Shift_Del p.R632Gfs*11 0.32 TCGA-HU-A4G9-01 11 134253988 134253988 G A B3GAT1 Silent p.T69T 0.48 TCGA-HU-A4G9-01 11 17741442 17741442 C T MYOD1 Missense_Mutation p.P38L 0.49 deleterious(0) possibly_damaging(0.467) TCGA-HU-A4G9-01 11 2418088 2418088 G A CD81 Missense_Mutation p.V235M 0.28 deleterious_low_confidence(0.03) probably_damaging(0.977) TCGA-HU-A4G9-01 11 30914483 30914483 C T DCDC1 Missense_Mutation p.R1652H 0.37 tolerated(0.57) possibly_damaging(0.715) TCGA-HU-A4G9-01 11 30926528 30926528 C T DCDC1 Missense_Mutation p.V1430M 0.40 deleterious(0.03) possibly_damaging(0.781) TCGA-HU-A4G9-01 11 34938201 34938201 A G PDHX 5'UTR 0.36 TCGA-HU-A4G9-01 11 35229751 35229751 C T CD44 Missense_Mutation p.T505M 0.33 deleterious(0.01) benign(0.418) TCGA-HU-A4G9-01 11 45928442 45928442 C T C11orf94 Silent p.Q51Q 0.43 TCGA-HU-A4G9-01 11 47266285 47266285 C - ACP2 Splice_Site p.X258_splice 0.27 TCGA-HU-A4G9-01 11 48149450 48149450 G - PTPRJ Frame_Shift_Del p.E406Rfs*33 0.27 TCGA-HU-A4G9-01 11 48177606 48177606 C T PTPRJ Missense_Mutation p.R1125C 0.37 deleterious(0.01) probably_damaging(0.973) TCGA-HU-A4G9-01 11 48239219 48239219 A T OR4B1 Silent p.T286T 0.37 TCGA-HU-A4G9-01 11 55595253 55595253 C T OR5L2 Missense_Mutation p.L187F 0.39 deleterious(0) probably_damaging(0.971) TCGA-HU-A4G9-01 11 56468148 56468148 C T OR9G1 Silent p.G95G 0.18 TCGA-HU-A4G9-01 11 57971241 57971241 G A OR1S2 Missense_Mutation p.A138V 0.47 deleterious(0.01) benign(0.053) TCGA-HU-A4G9-01 11 58275210 58275210 C T OR5B21 Silent p.A123A 0.32 TCGA-HU-A4G9-01 11 59282706 59282706 G - OR4D9 Frame_Shift_Del p.G109Efs*9 0.28 TCGA-HU-A4G9-01 11 6023815 6023815 C T OR56A4 Silent p.P188P 0.33 TCGA-HU-A4G9-01 11 60617781 60617781 C T CCDC86 Missense_Mutation p.P356S 0.39 tolerated(0.08) unknown(0) TCGA-HU-A4G9-01 11 6129814 6129814 C T OR56B4 Missense_Mutation p.A269V 0.28 tolerated(0.25) benign(0.068) TCGA-HU-A4G9-01 11 61511877 61511877 G A DAGLA Silent p.A1015A 0.40 TCGA-HU-A4G9-01 11 62289568 62289568 A G AHNAK Silent p.G4107G 0.43 TCGA-HU-A4G9-01 11 62377121 62377121 C A EML3 Missense_Mutation p.R205L 0.39 deleterious(0.02) benign(0.343) TCGA-HU-A4G9-01 11 62435132 62435134 TCT - C11orf48 In_Frame_Del p.E133del 0.38 TCGA-HU-A4G9-01 11 62439122 62439122 C T C11orf48 5'Flank 0.50 TCGA-HU-A4G9-01 11 63987213 63987213 A T FERMT3 Missense_Mutation p.D344V 0.35 tolerated(0.12) benign(0.063) TCGA-HU-A4G9-01 11 64594015 64594015 G T CDC42BPG Missense_Mutation p.P1509H 0.50 deleterious_low_confidence(0) possibly_damaging(0.838) TCGA-HU-A4G9-01 11 64675299 64675299 G A ATG2A Missense_Mutation p.R810C 0.26 deleterious(0) possibly_damaging(0.556) TCGA-HU-A4G9-01 11 65688997 65688997 A - DRAP1 3'UTR 0.70 TCGA-HU-A4G9-01 11 6592451 6592451 C T DNHD1 Missense_Mutation p.A4570V 0.30 benign(0.002) TCGA-HU-A4G9-01 11 6592454 6592454 A G DNHD1 Missense_Mutation p.D4571G 0.27 benign(0.002) TCGA-HU-A4G9-01 11 66191381 66191381 G A NPAS4 Silent p.P340P 0.45 TCGA-HU-A4G9-01 11 6662364 6662364 G A DCHS1 Missense_Mutation p.R161C 0.38 deleterious(0) benign(0.064) TCGA-HU-A4G9-01 11 66625209 66625209 G A LRFN4 5'UTR 0.41 TCGA-HU-A4G9-01 11 67171768 67171768 G A TBC1D10C Missense_Mutation p.G32D 0.33 tolerated(0.2) benign(0.003) TCGA-HU-A4G9-01 11 67218801 67218801 C T GPR152 Silent p.P465P 0.34 TCGA-HU-A4G9-01 11 67259711 67259711 C T PITPNM1 Silent p.S1176S 0.38 TCGA-HU-A4G9-01 11 68031298 68031298 A G C11orf24 5'UTR 0.67 TCGA-HU-A4G9-01 11 68326104 68326104 G A PPP6R3 Missense_Mutation p.A268T 0.39 deleterious(0.02) benign(0.281) TCGA-HU-A4G9-01 11 70332446 70332446 T C SHANK2 Missense_Mutation p.T1319A 0.09 tolerated(0.33) benign(0.217) TCGA-HU-A4G9-01 11 70332856 70332856 C A SHANK2 Missense_Mutation p.G1182V 0.45 tolerated(0.13) benign(0) TCGA-HU-A4G9-01 11 73811600 73811600 A C C2CD3 Missense_Mutation p.L901R 0.05 deleterious(0) probably_damaging(1) TCGA-HU-A4G9-01 11 74563070 74563070 C T XRRA1 Missense_Mutation p.V402I 0.43 tolerated(0.97) benign(0.01) TCGA-HU-A4G9-01 11 85437306 85437306 T - SYTL2 Frame_Shift_Del p.N65Ifs*9 0.26 TCGA-HU-A4G9-01 11 92887400 92887401 - A SLC36A4 Frame_Shift_Ins p.V361Cfs*25 0.36 TCGA-HU-A4G9-01 11 9735070 9735070 A - SWAP70 Frame_Shift_Del p.N102Tfs*31 0.43 TCGA-HU-A4G9-01 12 100441791 100441791 A - UHRF1BP1L Frame_Shift_Del p.L1301Wfs*9 0.38 TCGA-HU-A4G9-01 12 100957258 100957258 C T NR1H4 Silent p.D484D 0.43 TCGA-HU-A4G9-01 12 101488050 101488050 C T ANO4 Missense_Mutation p.A538V 0.36 deleterious(0) probably_damaging(0.929) TCGA-HU-A4G9-01 12 102046519 102046519 T C MYBPC1 Silent p.P505P 0.40 TCGA-HU-A4G9-01 12 102591346 102591346 T - PMCH Frame_Shift_Del p.N68Mfs*7 0.25 TCGA-HU-A4G9-01 12 109283287 109283288 - C DAO Frame_Shift_Ins p.R120Qfs*31 0.22 TCGA-HU-A4G9-01 12 109935661 109935661 G A UBE3B Missense_Mutation p.R251Q 0.45 tolerated(0.46) benign(0.002) TCGA-HU-A4G9-01 12 110778544 110778544 G A ATP2A2 Silent p.R614R 0.48 TCGA-HU-A4G9-01 12 11091143 11091143 C T TAS2R14 Missense_Mutation p.A222T 0.32 tolerated(0.19) benign(0.105) TCGA-HU-A4G9-01 12 112681729 112681729 T G HECTD4 Missense_Mutation p.D1387A 0.47 possibly_damaging(0.54) TCGA-HU-A4G9-01 12 113405292 113405292 C T OAS3 Missense_Mutation p.A920V 0.50 tolerated(0.13) possibly_damaging(0.668) TCGA-HU-A4G9-01 12 113905192 113905192 C T LHX5 Missense_Mutation p.R237Q 0.45 deleterious(0.02) probably_damaging(0.983) TCGA-HU-A4G9-01 12 114377796 114377796 C T RBM19 Missense_Mutation p.R636H 0.43 deleterious(0) probably_damaging(0.957) TCGA-HU-A4G9-01 12 114383685 114383685 G A RBM19 Missense_Mutation p.A525V 0.32 deleterious(0.03) possibly_damaging(0.893) TCGA-HU-A4G9-01 12 117595815 117595815 C T FBXO21 Silent p.A467A 0.39 TCGA-HU-A4G9-01 12 117728108 117728108 T C NOS1 Missense_Mutation p.T326A 0.50 tolerated(0.72) benign(0) TCGA-HU-A4G9-01 12 11905513 11905513 C T ETV6 Missense_Mutation p.R55C 0.31 tolerated(0.09) benign(0.112) TCGA-HU-A4G9-01 12 120575043 120575043 G A GCN1L1 Silent p.G2248G 0.35 TCGA-HU-A4G9-01 12 123950763 123950764 GA - SNRNP35 Frame_Shift_Del p.R234Gfs*5 0.29 TCGA-HU-A4G9-01 12 132624721 132624721 G A DDX51 Missense_Mutation p.A566V 0.39 deleterious(0) probably_damaging(0.997) TCGA-HU-A4G9-01 12 133197075 133197075 C T P2RX2 Missense_Mutation p.T227M 0.36 tolerated(0.25) benign(0.065) TCGA-HU-A4G9-01 12 21712605 21712605 T - GYS2 Frame_Shift_Del p.K403Nfs*7 0.29 TCGA-HU-A4G9-01 12 33031037 33031039 CTC - PKP2 In_Frame_Del p.E259del 0.20 TCGA-HU-A4G9-01 12 33592643 33592643 G A SYT10 5'UTR 0.56 TCGA-HU-A4G9-01 12 42707703 42707703 T - ZCRB1 Frame_Shift_Del p.K140Rfs*13 0.41 TCGA-HU-A4G9-01 12 427454 427454 G A KDM5A Silent p.D905D 0.37 TCGA-HU-A4G9-01 12 45410052 45410052 C T DBX2 3'UTR 0.40 TCGA-HU-A4G9-01 12 45740868 45740868 T C ANO6 Missense_Mutation p.S136P 0.44 deleterious(0.02) possibly_damaging(0.905) TCGA-HU-A4G9-01 12 48106392 48106392 T - ENDOU Frame_Shift_Del p.G294Afs*82 0.31 TCGA-HU-A4G9-01 12 49317602 49317602 C A FKBP11 Missense_Mutation p.L117F 0.40 deleterious(0) possibly_damaging(0.774) TCGA-HU-A4G9-01 12 51675198 51675198 C T BIN2 3'UTR 0.36 TCGA-HU-A4G9-01 12 53685483 53685483 A G ESPL1 Missense_Mutation p.S1844G 0.42 tolerated(0.18) benign(0.12) TCGA-HU-A4G9-01 12 53861054 53861054 C T PCBP2 Missense_Mutation p.T259M 0.42 tolerated(0.44) benign(0.011) TCGA-HU-A4G9-01 12 53897560 53897560 T A TARBP2 Silent p.A130A 0.38 TCGA-HU-A4G9-01 12 54645832 54645832 T - CBX5 Frame_Shift_Del p.K106Rfs*31 0.37 TCGA-HU-A4G9-01 12 56478854 56478854 G A ERBB3 Missense_Mutation p.V104M 0.16 deleterious(0.05) possibly_damaging(0.789) TCGA-HU-A4G9-01 12 56526318 56526318 C A ESYT1 Silent p.T366T 0.31 TCGA-HU-A4G9-01 12 56742816 56742817 - G STAT2 Frame_Shift_Ins p.K490Qfs*41 0.33 TCGA-HU-A4G9-01 12 57909883 57909883 G A MARS Intron 0.36 TCGA-HU-A4G9-01 12 62996719 62996719 A G C12orf61 3'UTR 0.33 TCGA-HU-A4G9-01 12 65445042 65445042 A G WIF1 3'UTR 0.40 TCGA-HU-A4G9-01 12 66152139 66152139 C A RPSAP52 RNA 0.60 TCGA-HU-A4G9-01 12 6639960 6639960 C A NCAPD2 Missense_Mutation p.P1314Q 0.40 tolerated(0.07) benign(0.04) TCGA-HU-A4G9-01 12 69158711 69158711 A - SLC35E3 3'UTR 0.20 TCGA-HU-A4G9-01 12 70070963 70070963 G A BEST3 Silent p.T237T 0.38 TCGA-HU-A4G9-01 12 75692669 75692669 C T CAPS2 Missense_Mutation p.R330Q 0.28 deleterious(0) probably_damaging(0.996) TCGA-HU-A4G9-01 12 80190590 80190590 G A PPP1R12A Silent p.S811S 0.27 TCGA-HU-A4G9-01 12 8077069 8077069 A G SLC2A3 Silent p.H335H 0.31 TCGA-HU-A4G9-01 12 8212583 8212583 C T C3AR1 Missense_Mutation p.A67T 0.41 deleterious(0) probably_damaging(1) TCGA-HU-A4G9-01 12 8926321 8926321 G - RIMKLB Frame_Shift_Del p.G369Afs*5 0.27 TCGA-HU-A4G9-01 12 98849119 98849119 C T SLC9A7P1 RNA 0.27 TCGA-HU-A4G9-01 12 99837450 99837450 C A ANKS1B Splice_Site p.X525_splice 0.59 TCGA-HU-A4G9-01 13 103514608 103514608 G A BIVM-ERCC5 Missense_Mutation p.R796H 0.43 tolerated_low_confidence(0.21) benign(0.084) TCGA-HU-A4G9-01 13 109779875 109779875 C T MYO16 Missense_Mutation p.A1321V 0.29 deleterious(0.05) benign(0.02) TCGA-HU-A4G9-01 13 111371946 111371946 C T ING1 Silent p.D312D 0.34 TCGA-HU-A4G9-01 13 114292126 114292126 T G TFDP1 Intron 0.50 TCGA-HU-A4G9-01 13 114324053 114324053 G A GRK1 Missense_Mutation p.V251M 0.40 deleterious(0) probably_damaging(0.976) TCGA-HU-A4G9-01 13 114507955 114507955 C T TMEM255B Missense_Mutation p.T256M 0.38 deleterious(0.02) possibly_damaging(0.541) TCGA-HU-A4G9-01 13 21006292 21006292 A G CRYL1 Silent p.V194V 0.29 TCGA-HU-A4G9-01 13 21396279 21396279 A G XPO4 Silent p.T330T 0.37 TCGA-HU-A4G9-01 13 23905616 23905616 A G SACS Silent p.G4133G 0.37 TCGA-HU-A4G9-01 13 30002892 30002892 C G MTUS2 Intron 0.38 TCGA-HU-A4G9-01 13 33344568 33344568 A - PDS5B Frame_Shift_Del p.G1314Efs*80 0.35 TCGA-HU-A4G9-01 13 36776016 36776016 C T SOHLH2 Missense_Mutation p.R165K 0.53 deleterious(0) probably_damaging(0.99) TCGA-HU-A4G9-01 13 46549602 46549603 - CT ZC3H13 Frame_Shift_Ins p.R762Sfs*104 0.39 TCGA-HU-A4G9-01 13 49076918 49076918 A G RCBTB2 Silent p.T353T 0.35 TCGA-HU-A4G9-01 13 61084778 61084779 - GG TDRD3 Frame_Shift_Ins p.R346Gfs*3 0.29 TCGA-HU-A4G9-01 13 75936261 75936261 G A TBC1D4 Silent p.H327H 0.43 TCGA-HU-A4G9-01 13 77755927 77755927 C T MYCBP2 Missense_Mutation p.R1579Q 0.28 possibly_damaging(0.74) TCGA-HU-A4G9-01 13 88329003 88329003 G A SLITRK5 Missense_Mutation p.G454R 0.26 tolerated(0.49) benign(0.216) TCGA-HU-A4G9-01 13 96513099 96513099 T C UGGT2 Missense_Mutation p.K1228R 0.36 tolerated(0.1) benign(0.021) TCGA-HU-A4G9-01 13 98829237 98829237 G A RNF113B Missense_Mutation p.A85V 0.44 tolerated(0.22) benign(0.069) TCGA-HU-A4G9-01 14 101449281 101449281 C T SNORD114-22 RNA 0.58 TCGA-HU-A4G9-01 14 102445788 102445788 T - DYNC1H1 Frame_Shift_Del p.F161Lfs*52 0.32 TCGA-HU-A4G9-01 14 103598068 103598068 C T TNFAIP2 Missense_Mutation p.T464I 0.28 tolerated(0.3) benign(0.012) TCGA-HU-A4G9-01 14 105411993 105411993 G A AHNAK2 Silent p.P3265P 0.44 TCGA-HU-A4G9-01 14 106236827 106236827 G A IGHG3 Missense_Mutation p.R128W 0.31 deleterious(0.02) benign(0.011) TCGA-HU-A4G9-01 14 20711039 20711039 G A OR11H4 Missense_Mutation p.C30Y 0.53 deleterious(0.03) benign(0.035) TCGA-HU-A4G9-01 14 20852227 20852227 C - TEP1 Frame_Shift_Del p.Q1169Sfs*28 0.26 TCGA-HU-A4G9-01 14 21269716 21269716 G T RNASE1 3'UTR 0.50 TCGA-HU-A4G9-01 14 21543173 21543173 C T ARHGEF40 Silent p.C428C 0.42 TCGA-HU-A4G9-01 14 21992285 21992285 T - SALL2 Frame_Shift_Del p.N526Tfs*25 0.24 TCGA-HU-A4G9-01 14 22192133 22192133 G T TRAV3 5'UTR 0.12 TCGA-HU-A4G9-01 14 23517514 23517514 G - CDH24 Frame_Shift_Del p.P712Rfs*129 0.35 TCGA-HU-A4G9-01 14 23793419 23793419 G A PABPN1 Missense_Mutation p.A268T 0.39 tolerated(0.07) benign(0.044) TCGA-HU-A4G9-01 14 24546187 24546187 C T CPNE6 Missense_Mutation p.P422L 0.38 tolerated(0.16) benign(0.032) TCGA-HU-A4G9-01 14 24610340 24610340 G A EMC9 Silent p.V58V 0.33 TCGA-HU-A4G9-01 14 24843554 24843563 GCCCCAGGTG - NFATC4 Frame_Shift_Del p.P649Rfs*10 0.50 TCGA-HU-A4G9-01 14 24909989 24909989 C A SDR39U1 Missense_Mutation p.G158W 0.32 deleterious(0) probably_damaging(1) TCGA-HU-A4G9-01 14 25042923 25042923 T G CTSG Silent p.R230R 0.42 TCGA-HU-A4G9-01 14 31592235 31592235 C T HECTD1 Missense_Mutation p.R1667H 0.39 deleterious(0.01) probably_damaging(0.964) TCGA-HU-A4G9-01 14 37051560 37051560 C T NKX2-8 Missense_Mutation p.R12H 0.43 deleterious(0) probably_damaging(0.991) TCGA-HU-A4G9-01 14 44974339 44974339 C G FSCB Missense_Mutation p.A618P 0.50 tolerated(0.07) possibly_damaging(0.82) TCGA-HU-A4G9-01 14 56233000 56233000 G A RP11-813I20.2 Intron 0.46 TCGA-HU-A4G9-01 14 59930838 59930838 G A GPR135 Silent p.S369S 0.39 TCGA-HU-A4G9-01 14 59930957 59930957 C T GPR135 Missense_Mutation p.A330T 0.46 deleterious(0) probably_damaging(0.997) TCGA-HU-A4G9-01 14 60074118 60074118 C T RTN1 Missense_Mutation p.V620M 0.32 deleterious(0) probably_damaging(1) TCGA-HU-A4G9-01 14 62234021 62234021 G A SNAPC1 Missense_Mutation p.R127K 0.45 deleterious(0.02) possibly_damaging(0.644) TCGA-HU-A4G9-01 14 64518335 64518335 A G SYNE2 Silent p.E2568E 0.41 TCGA-HU-A4G9-01 14 64676135 64676135 G A SYNE2 Intron 0.17 TCGA-HU-A4G9-01 14 66975270 66975270 A G GPHN Missense_Mutation p.T9A 0.41 deleterious_low_confidence(0.02) benign(0.066) TCGA-HU-A4G9-01 14 72190553 72190554 - A SIPA1L1 Frame_Shift_Ins p.P1490Tfs*23 0.29 TCGA-HU-A4G9-01 14 74823869 74823869 T C VRTN Missense_Mutation p.V128A 0.44 deleterious(0.04) probably_damaging(0.994) TCGA-HU-A4G9-01 14 75376342 75376342 A G RPS6KL1 Missense_Mutation p.W392R 0.32 deleterious(0) probably_damaging(1) TCGA-HU-A4G9-01 14 89123848 89123848 T C EML5 Splice_Site p.X1293_splice 0.47 TCGA-HU-A4G9-01 14 92353624 92353624 C T FBLN5 Missense_Mutation p.V218M 0.37 tolerated(0.11) benign(0.288) TCGA-HU-A4G9-01 14 94405856 94405857 GC - ASB2 Frame_Shift_Del p.R405Pfs*137 0.40 TCGA-HU-A4G9-01 15 101110170 101110170 G T LINS Nonsense_Mutation p.S516* 0.33 TCGA-HU-A4G9-01 15 24921326 24921326 C - NPAP1 Frame_Shift_Del p.P106Rfs*9 0.32 TCGA-HU-A4G9-01 15 25351684 25351684 A - SNORD116-29 RNA 0.36 TCGA-HU-A4G9-01 15 25492322 25492322 G T SNORD115-40 3'Flank 0.40 TCGA-HU-A4G9-01 15 25492436 25492436 G T SNORD115-40 3'Flank 0.49 TCGA-HU-A4G9-01 15 25924677 25924678 - A ATP10A Frame_Shift_Ins p.L1437Ffs*79 0.09 TCGA-HU-A4G9-01 15 26107859 26107859 C T ATP10A Missense_Mutation p.E129K 0.30 deleterious(0) probably_damaging(1) TCGA-HU-A4G9-01 15 28493822 28493822 A G HERC2 Silent p.C1037C 0.41 TCGA-HU-A4G9-01 15 41120845 41120845 T C PPP1R14D 5'UTR 0.56 TCGA-HU-A4G9-01 15 42717190 42717190 C A ZNF106 Missense_Mutation p.G1655C 0.30 deleterious(0.01) possibly_damaging(0.489) TCGA-HU-A4G9-01 15 43022830 43022830 G A CDAN1 Missense_Mutation p.R714W 0.22 deleterious(0) probably_damaging(0.995) TCGA-HU-A4G9-01 15 44063406 44063406 A G PDIA3 Missense_Mutation p.E503G 0.27 deleterious(0.03) benign(0.354) TCGA-HU-A4G9-01 15 45431269 45431269 A G DUOX1 Silent p.P373P 0.48 TCGA-HU-A4G9-01 15 48056471 48056471 G A SEMA6D Missense_Mutation p.A356T 0.48 deleterious(0) probably_damaging(0.917) TCGA-HU-A4G9-01 15 48762843 48762843 C T FBN1 Missense_Mutation p.G1483R 0.44 probably_damaging(1) TCGA-HU-A4G9-01 15 49426244 49426244 A - COPS2 Frame_Shift_Del p.F266Lfs*19 0.25 TCGA-HU-A4G9-01 15 51260544 51260544 C T AP4E1 Missense_Mutation p.R646C 0.38 deleterious(0) probably_damaging(1) TCGA-HU-A4G9-01 15 51792058 51792058 T C DMXL2 Silent p.Q1121Q 0.38 TCGA-HU-A4G9-01 15 54005019 54005019 A G WDR72 Missense_Mutation p.C221R 0.41 deleterious(0) probably_damaging(0.999) TCGA-HU-A4G9-01 15 55497750 55497750 C T RAB27A Silent p.T207T 0.40 TCGA-HU-A4G9-01 15 60674549 60674549 T G ANXA2 Missense_Mutation p.K65T 0.33 tolerated(0.26) benign(0.028) TCGA-HU-A4G9-01 15 63881043 63881043 A - USP3 Intron 0.29 TCGA-HU-A4G9-01 15 65771345 65771345 A G DPP8 Silent p.S459S 0.48 TCGA-HU-A4G9-01 15 69113100 69113100 T G ANP32A 5'UTR 0.44 TCGA-HU-A4G9-01 15 74336586 74336586 C T PML Missense_Mutation p.A629V 0.38 tolerated(0.09) probably_damaging(0.999) TCGA-HU-A4G9-01 15 75687179 75687179 G A SIN3A Nonsense_Mutation p.R707* 0.40 TCGA-HU-A4G9-01 15 76426559 76426559 A G C15orf27 5'UTR 0.44 TCGA-HU-A4G9-01 15 80450367 80450367 T - FAH Intron 0.30 TCGA-HU-A4G9-01 15 85341639 85341639 C T ZNF592 Silent p.G890G 0.45 TCGA-HU-A4G9-01 15 90631917 90631918 - C IDH2 Frame_Shift_Ins p.T146Dfs*126 0.37 TCGA-HU-A4G9-01 15 90766838 90766841 CCTC - SEMA4B Frame_Shift_Del p.F303Lfs*25 0.52 TCGA-HU-A4G9-01 15 93528850 93528850 G A CHD2 Silent p.P1120P 0.33 TCGA-HU-A4G9-01 15 94983445 94983445 T C MCTP2 Missense_Mutation p.I709T 0.47 deleterious(0) benign(0.143) TCGA-HU-A4G9-01 16 15703435 15703435 T C KIAA0430 Missense_Mutation p.Y1300C 0.46 deleterious(0.04) probably_damaging(0.947) TCGA-HU-A4G9-01 16 1820969 1820969 C T NME3 Missense_Mutation p.R102H 0.40 deleterious(0.01) benign(0.006) TCGA-HU-A4G9-01 16 18846365 18846365 G A SMG1 Missense_Mutation p.R2727C 0.42 deleterious(0) probably_damaging(0.99) TCGA-HU-A4G9-01 16 19514884 19514884 T C GDE1 Missense_Mutation p.N302D 0.44 deleterious(0.04) probably_damaging(0.997) TCGA-HU-A4G9-01 16 1961987 1961987 G A HS3ST6 Silent p.H180H 0.40 TCGA-HU-A4G9-01 16 19883731 19883731 C T GPRC5B Missense_Mutation p.R146H 0.46 deleterious(0.04) probably_damaging(1) TCGA-HU-A4G9-01 16 20043085 20043085 T - GPR139 Frame_Shift_Del p.N345Mfs*5 0.34 TCGA-HU-A4G9-01 16 2013028 2013028 T C RPS2 Intron 0.44 TCGA-HU-A4G9-01 16 20976175 20976175 C T DNAH3 Missense_Mutation p.A3011T 0.40 deleterious(0.03) possibly_damaging(0.516) TCGA-HU-A4G9-01 16 2231521 2231522 - C CASKIN1 Frame_Shift_Ins p.L618Pfs*10 0.29 TCGA-HU-A4G9-01 16 22320299 22320299 A G POLR3E Silent p.K73K 0.14 TCGA-HU-A4G9-01 16 2258654 2258654 C T MLST8 Intron 0.37 TCGA-HU-A4G9-01 16 2481176 2481176 G A CCNF Missense_Mutation p.R21Q 0.39 deleterious(0.01) benign(0.037) TCGA-HU-A4G9-01 16 2489443 2489443 C T CCNF Silent p.S228S 0.33 TCGA-HU-A4G9-01 16 28112798 28112798 C T XPO6 Missense_Mutation p.R1086Q 0.39 tolerated(0.21) benign(0.032) TCGA-HU-A4G9-01 16 29108518 29108518 C T RRN3P2 RNA 0.24 TCGA-HU-A4G9-01 16 30035069 30035069 C T C16orf92 Missense_Mutation p.T51M 0.43 tolerated(0.07) benign(0.001) TCGA-HU-A4G9-01 16 30681065 30681065 A G FBRS 3'UTR 0.38 TCGA-HU-A4G9-01 16 30734923 30734923 C - SRCAP Frame_Shift_Del p.L1395* 0.28 TCGA-HU-A4G9-01 16 30768156 30768156 G A PHKG2 Missense_Mutation p.R320Q 0.37 deleterious(0.02) probably_damaging(0.994) TCGA-HU-A4G9-01 16 3100297 3100297 C T MMP25 Silent p.T137T 0.42 TCGA-HU-A4G9-01 16 3119141 3119141 C T IL32 Missense_Mutation p.R118W 0.29 deleterious(0.01) probably_damaging(0.994) TCGA-HU-A4G9-01 16 3283756 3283756 G A ZNF200 5'UTR 0.35 TCGA-HU-A4G9-01 16 3613679 3613679 A C NLRC3 Missense_Mutation p.M467R 0.38 deleterious(0) benign(0.045) TCGA-HU-A4G9-01 16 3641292 3641292 C T SLX4 Missense_Mutation p.V783I 0.10 tolerated(0.25) possibly_damaging(0.841) TCGA-HU-A4G9-01 16 3716059 3716059 T - TRAP1 Frame_Shift_Del p.D433Mfs*21 0.32 TCGA-HU-A4G9-01 16 46763518 46763518 G A MYLK3 Silent p.S550S 0.34 TCGA-HU-A4G9-01 16 48296693 48296693 A - LONP2 Frame_Shift_Del p.M300Cfs*10 0.34 TCGA-HU-A4G9-01 16 53692344 53692344 T G RPGRIP1L Missense_Mutation p.E461D 0.14 deleterious(0) benign(0.163) TCGA-HU-A4G9-01 16 56660780 56660782 CTT - MT1E Intron 0.35 TCGA-HU-A4G9-01 16 66946430 66946430 C T CDH16 Missense_Mutation p.A446T 0.41 deleterious(0.03) probably_damaging(0.986) TCGA-HU-A4G9-01 16 67232157 67232157 C T E2F4 3'UTR 0.53 TCGA-HU-A4G9-01 16 67234150 67234150 G A ELMO3 Missense_Mutation p.R153H 0.34 deleterious(0.01) possibly_damaging(0.891) TCGA-HU-A4G9-01 16 68109393 68109393 T C DUS2 Silent p.A356A 0.30 TCGA-HU-A4G9-01 16 68373281 68373281 C T PRMT7 Silent p.S187S 0.34 TCGA-HU-A4G9-01 16 69390713 69390713 A G TERF2 3'UTR 0.52 TCGA-HU-A4G9-01 16 71571181 71571181 G A CHST4 Missense_Mutation p.V201M 0.48 deleterious(0.02) possibly_damaging(0.474) TCGA-HU-A4G9-01 16 74670377 74670377 C T RFWD3 Silent p.Q431Q 0.33 TCGA-HU-A4G9-01 16 7680608 7680608 C T RBFOX1 Missense_Mutation p.T247M 0.23 tolerated(0.05) possibly_damaging(0.585) TCGA-HU-A4G9-01 16 77353960 77353960 C T ADAMTS18 Missense_Mutation p.G773D 0.35 deleterious(0) probably_damaging(0.996) TCGA-HU-A4G9-01 16 84522882 84522882 G A TLDC1 Splice_Site p.X177_splice 0.34 TCGA-HU-A4G9-01 16 84531619 84531619 T C TLDC1 Missense_Mutation p.D25G 0.44 deleterious(0) benign(0.178) TCGA-HU-A4G9-01 16 85135924 85135924 A - FAM92B Frame_Shift_Del p.C183Vfs*4 0.30 TCGA-HU-A4G9-01 16 86565765 86565765 C T MTHFSD Missense_Mutation p.R335Q 0.52 tolerated(0.13) benign(0.093) TCGA-HU-A4G9-01 16 88694459 88694459 C - ZC3H18 Frame_Shift_Del p.Q804Sfs*15 0.33 TCGA-HU-A4G9-01 16 88958765 88958765 C T CBFA2T3 Missense_Mutation p.G170R 0.36 deleterious(0.02) possibly_damaging(0.67) TCGA-HU-A4G9-01 16 88967982 88967982 G - CBFA2T3 Frame_Shift_Del p.S79Afs*41 0.36 TCGA-HU-A4G9-01 17 10428368 10428368 A G MYH2 Silent p.H1559H 0.44 TCGA-HU-A4G9-01 17 1381382 1381382 G A MYO1C Missense_Mutation p.A467V 0.08 deleterious(0.02) benign(0.043) TCGA-HU-A4G9-01 17 15890645 15890645 A G ZSWIM7 Silent p.L46L 0.19 TCGA-HU-A4G9-01 17 15971282 15971282 G A NCOR1 Missense_Mutation p.A1556V 0.47 benign(0.046) TCGA-HU-A4G9-01 17 17698048 17698048 C T RAI1 Missense_Mutation p.R596W 0.35 deleterious(0) probably_damaging(0.995) TCGA-HU-A4G9-01 17 18022386 18022386 G A MYO15A Missense_Mutation p.R91H 0.37 probably_damaging(0.989) TCGA-HU-A4G9-01 17 18054840 18054840 A G MYO15A Missense_Mutation p.R2596G 0.32 unknown(0) TCGA-HU-A4G9-01 17 18167652 18167652 C T MIEF2 Silent p.D324D 0.35 TCGA-HU-A4G9-01 17 2227356 2227356 A - SRR 3'UTR 0.37 TCGA-HU-A4G9-01 17 25909964 25909964 G A KSR1 Silent p.P134P 0.39 TCGA-HU-A4G9-01 17 26961947 26961947 A - KIAA0100 Frame_Shift_Del p.F886Lfs*3 0.31 TCGA-HU-A4G9-01 17 27182060 27182060 C T ERAL1 Missense_Mutation p.A3V 0.46 deleterious_low_confidence(0.03) possibly_damaging(0.729) TCGA-HU-A4G9-01 17 35641758 35641758 C T ACACA Missense_Mutation p.G151E 0.45 deleterious(0) possibly_damaging(0.901) TCGA-HU-A4G9-01 17 38412743 38412743 C T WIPF2 Missense_Mutation p.P11L 0.46 deleterious_low_confidence(0.05) unknown(0) TCGA-HU-A4G9-01 17 38904456 38904456 T - KRT25 3'UTR 0.19 TCGA-HU-A4G9-01 17 39977935 39977935 C T FKBP10 Silent p.L477L 0.31 TCGA-HU-A4G9-01 17 4075887 4075887 A G ANKFY1 Missense_Mutation p.Y1077H 0.47 deleterious(0) probably_damaging(0.999) TCGA-HU-A4G9-01 17 41345516 41345516 C T NBR1 Missense_Mutation p.S462F 0.43 deleterious(0) probably_damaging(0.928) TCGA-HU-A4G9-01 17 42274991 42274991 C T ATXN7L3 Silent p.T53T 0.38 TCGA-HU-A4G9-01 17 4574987 4574987 T - PELP1 Frame_Shift_Del p.K1100Rfs*43 0.39 TCGA-HU-A4G9-01 17 45822626 45822626 G A TBX21 Missense_Mutation p.R501H 0.35 deleterious(0) probably_damaging(0.991) TCGA-HU-A4G9-01 17 48246578 48246578 C T SGCA Missense_Mutation p.A237V 0.28 tolerated(0.43) benign(0.021) TCGA-HU-A4G9-01 17 4862784 4862785 - C SPAG7 3'UTR 0.14 TCGA-HU-A4G9-01 17 5462048 5462048 C T NLRP1 Silent p.T656T 0.37 TCGA-HU-A4G9-01 17 55962835 55962835 G - CUEDC1 Frame_Shift_Del p.Q31Rfs*57 0.23 TCGA-HU-A4G9-01 17 56166533 56166533 C T DYNLL2 Missense_Mutation p.H55Y 0.34 deleterious(0.04) possibly_damaging(0.611) TCGA-HU-A4G9-01 17 56435161 56435161 C - RNF43 Frame_Shift_Del p.G659Vfs*41 0.47 TCGA-HU-A4G9-01 17 61769160 61769160 G A MAP3K3 Missense_Mutation p.R502Q 0.37 deleterious(0.01) possibly_damaging(0.866) TCGA-HU-A4G9-01 17 62019107 62019107 C T SCN4A Missense_Mutation p.G1512D 0.40 deleterious(0.01) possibly_damaging(0.87) TCGA-HU-A4G9-01 17 62038590 62038590 G A SCN4A Missense_Mutation p.T603M 0.37 deleterious(0) probably_damaging(0.953) TCGA-HU-A4G9-01 17 63221121 63221121 C T RGS9 Missense_Mutation p.P470L 0.36 tolerated(0.98) benign(0) TCGA-HU-A4G9-01 17 65052208 65052208 C T CACNG1 Missense_Mutation p.R164C 0.31 deleterious(0.01) probably_damaging(0.995) TCGA-HU-A4G9-01 17 73753610 73753610 A G ITGB4 Missense_Mutation p.M1815V 0.31 tolerated(1) benign(0) TCGA-HU-A4G9-01 17 74087253 74087253 T C EXOC7 Missense_Mutation p.K291R 0.31 tolerated(0.33) benign(0.199) TCGA-HU-A4G9-01 17 74714828 74714828 G A JMJD6 Missense_Mutation p.R399C 0.37 deleterious_low_confidence(0) possibly_damaging(0.855) TCGA-HU-A4G9-01 17 76047106 76047107 - G TNRC6C Frame_Shift_Ins p.E657Gfs*13 0.38 TCGA-HU-A4G9-01 17 77769309 77769309 C G CBX8 Missense_Mutation p.A99P 0.40 tolerated(0.26) possibly_damaging(0.699) TCGA-HU-A4G9-01 17 78039288 78039288 G A CCDC40 Missense_Mutation p.C482Y 0.40 tolerated(0.06) benign(0.042) TCGA-HU-A4G9-01 17 78182049 78182049 G T CARD14 Missense_Mutation p.G974C 0.21 deleterious(0.04) benign(0.011) TCGA-HU-A4G9-01 17 78938200 78938200 C T RPTOR 3'UTR 0.51 TCGA-HU-A4G9-01 17 79173252 79173252 C T AZI1 Missense_Mutation p.R374Q 0.40 tolerated(0.28) benign(0.001) TCGA-HU-A4G9-01 17 79511074 79511074 C T C17orf70 Missense_Mutation p.A795T 0.43 tolerated(0.09) possibly_damaging(0.654) TCGA-HU-A4G9-01 17 79893246 79893246 G A PYCR1 Silent p.C95C 0.38 TCGA-HU-A4G9-01 17 80048771 80048771 A G FASN Missense_Mutation p.L556P 0.27 deleterious(0) probably_damaging(0.997) TCGA-HU-A4G9-01 17 9804342 9804342 C T RCVRN Missense_Mutation p.E153K 0.27 tolerated(0.11) possibly_damaging(0.49) TCGA-HU-A4G9-01 18 12720544 12720544 A - PSMG2 Frame_Shift_Del p.S150Vfs*6 0.46 TCGA-HU-A4G9-01 18 21739551 21739551 T - CABYR Frame_Shift_Del p.Q222Kfs*27 0.34 TCGA-HU-A4G9-01 18 28586948 28586948 C T DSC3 Missense_Mutation p.G605R 0.43 deleterious(0) probably_damaging(1) TCGA-HU-A4G9-01 18 28993639 28993640 AT - DSG4 3'UTR 0.35 TCGA-HU-A4G9-01 18 29340010 29340010 C T SLC25A52 Silent p.T215T 0.42 TCGA-HU-A4G9-01 18 29693753 29693753 T C RNF138 Missense_Mutation p.Y108H 0.64 deleterious(0) probably_damaging(0.999) TCGA-HU-A4G9-01 18 31319791 31319791 C T ASXL3 Missense_Mutation p.P808L 0.50 benign(0.008) TCGA-HU-A4G9-01 18 34205516 34205516 C - FHOD3 Frame_Shift_Del p.S336Vfs*138 0.37 TCGA-HU-A4G9-01 18 44560469 44560469 G A TCEB3B Silent p.Y389Y 0.34 TCGA-HU-A4G9-01 18 47383217 47383217 C T MYO5B Missense_Mutation p.G1330S 0.42 tolerated(0.81) possibly_damaging(0.748) TCGA-HU-A4G9-01 18 5293286 5293286 A T ZBTB14 5'UTR 0.43 TCGA-HU-A4G9-01 18 56246941 56246941 A - ALPK2 Frame_Shift_Del p.L356Yfs*2 0.35 TCGA-HU-A4G9-01 18 63530035 63530035 G A CDH7 Silent p.V582V 0.34 TCGA-HU-A4G9-01 18 72343856 72343856 G A ZNF407 Missense_Mutation p.R294H 0.46 tolerated(0.52) benign(0.001) TCGA-HU-A4G9-01 18 74728768 74728768 C A MBP 3'UTR 0.44 TCGA-HU-A4G9-01 18 77208862 77208862 C T NFATC1 Silent p.H476H 0.52 TCGA-HU-A4G9-01 18 9280973 9280973 C T ANKRD12 Missense_Mutation p.A2013V 0.40 deleterious(0) probably_damaging(0.999) TCGA-HU-A4G9-01 19 1058906 1058906 G - ABCA7 Frame_Shift_Del p.D1791Mfs*5 0.12 TCGA-HU-A4G9-01 19 10624718 10624718 C T S1PR5 Missense_Mutation p.G324R 0.46 tolerated(0.28) benign(0.401) TCGA-HU-A4G9-01 19 1065448 1065448 G - ABCA7 3'UTR 0.28 TCGA-HU-A4G9-01 19 10824023 10824023 T - QTRT1 3'UTR 0.33 TCGA-HU-A4G9-01 19 11488473 11488473 A - EPOR 3'UTR 0.38 TCGA-HU-A4G9-01 19 11558289 11558289 T C PRKCSH Silent p.P295P 0.47 TCGA-HU-A4G9-01 19 12576151 12576151 A G ZNF709 Silent p.P195P 0.46 TCGA-HU-A4G9-01 19 12918303 12918303 G A RNASEH2A Missense_Mutation p.G132S 0.40 deleterious(0.01) benign(0.438) TCGA-HU-A4G9-01 19 13039255 13039255 T C FARSA Missense_Mutation p.T248A 0.04 deleterious(0.02) probably_damaging(0.957) TCGA-HU-A4G9-01 19 14281586 14281586 T C LPHN1 Missense_Mutation p.Q101R 0.44 deleterious(0) probably_damaging(0.953) TCGA-HU-A4G9-01 19 1430254 1430254 C - DAZAP1 Frame_Shift_Del p.P257Rfs*78 0.32 TCGA-HU-A4G9-01 19 1556717 1556717 C T MEX3D Silent p.P267P 0.45 TCGA-HU-A4G9-01 19 1581217 1581217 G A MBD3 Missense_Mutation p.A184V 0.10 deleterious(0) probably_damaging(0.984) TCGA-HU-A4G9-01 19 16536014 16536014 G A EPS15L1 Silent p.P224P 0.07 TCGA-HU-A4G9-01 19 18245776 18245776 C T MAST3 Silent p.F589F 0.42 TCGA-HU-A4G9-01 19 18557573 18557573 G A ELL Missense_Mutation p.T506M 0.30 tolerated(0.32) benign(0.029) TCGA-HU-A4G9-01 19 19758333 19758333 C T ATP13A1 Missense_Mutation p.R933H 0.34 deleterious(0.01) benign(0.055) TCGA-HU-A4G9-01 19 19766196 19766196 A G ATP13A1 Missense_Mutation p.V488A 0.35 deleterious(0) probably_damaging(0.996) TCGA-HU-A4G9-01 19 20216076 20216076 A - ZNF90 Frame_Shift_Del p.K61Nfs*5 0.27 TCGA-HU-A4G9-01 19 20808338 20808338 T - ZNF626 Frame_Shift_Del p.G116Dfs*3 0.28 TCGA-HU-A4G9-01 19 21720332 21720332 T C ZNF429 Missense_Mutation p.S493P 0.17 tolerated(0.08) benign(0.007) TCGA-HU-A4G9-01 19 23329345 23329345 C T ZNF730 Missense_Mutation p.T500I 0.45 tolerated(0.43) benign(0) TCGA-HU-A4G9-01 19 23557561 23557561 C T ZNF91 Silent p.L12L 0.38 TCGA-HU-A4G9-01 19 23836865 23836865 G A ZNF675 Silent p.G290G 0.42 TCGA-HU-A4G9-01 19 2733205 2733205 C T SLC39A3 Silent p.S163S 0.45 TCGA-HU-A4G9-01 19 31769253 31769253 G C TSHZ3 Missense_Mutation p.D482E 0.36 tolerated(0.93) benign(0.001) TCGA-HU-A4G9-01 19 3179829 3179829 G A S1PR4 Missense_Mutation p.G347R 0.13 deleterious(0.04) benign(0.166) TCGA-HU-A4G9-01 19 3204745 3204745 G - NCLN Frame_Shift_Del p.V402Cfs*10 0.36 TCGA-HU-A4G9-01 19 3532525 3532525 G - FZR1 Frame_Shift_Del p.G375Afs*14 0.34 TCGA-HU-A4G9-01 19 36046611 36046611 C T ATP4A Missense_Mutation p.R658H 0.44 deleterious(0.01) probably_damaging(0.998) TCGA-HU-A4G9-01 19 3633441 3633441 G A PIP5K1C Silent p.S666S 0.31 TCGA-HU-A4G9-01 19 37118463 37118463 T - ZNF382 3'UTR 0.24 TCGA-HU-A4G9-01 19 37441358 37441358 G A ZNF568 Missense_Mutation p.V435I 0.33 tolerated(0.31) probably_damaging(0.962) TCGA-HU-A4G9-01 19 38027860 38027860 C T ZNF793 Silent p.G100G 0.32 TCGA-HU-A4G9-01 19 39068674 39068675 - G RYR1 Frame_Shift_Ins p.L4765Afs*106 0.21 TCGA-HU-A4G9-01 19 39995901 39995901 G A DLL3 Silent p.P301P 0.38 TCGA-HU-A4G9-01 19 40398365 40398365 G A FCGBP Missense_Mutation p.A2201V 0.15 possibly_damaging(0.798) TCGA-HU-A4G9-01 19 41105349 41105349 C T LTBP4 Silent p.C76C 0.41 TCGA-HU-A4G9-01 19 41117787 41117787 C - LTBP4 Frame_Shift_Del p.P761Hfs*50 0.53 TCGA-HU-A4G9-01 19 41351354 41351354 C T CYP2A6 Missense_Mutation p.G336S 0.44 benign(0.415) TCGA-HU-A4G9-01 19 41822685 41822685 G A CCDC97 Missense_Mutation p.R148H 0.42 deleterious(0.02) probably_damaging(0.998) TCGA-HU-A4G9-01 19 42813866 42813866 G A PRR19 Missense_Mutation p.D44N 0.46 tolerated(0.26) benign(0.016) TCGA-HU-A4G9-01 19 42856601 42856601 A G MEGF8 Missense_Mutation p.N1048D 0.46 tolerated(0.11) benign(0.012) TCGA-HU-A4G9-01 19 4323029 4323029 C T FSD1 Silent p.Y362Y 0.37 TCGA-HU-A4G9-01 19 4355005 4355005 C T MPND Silent p.D302D 0.26 TCGA-HU-A4G9-01 19 44224168 44224168 A - IRGC 3'UTR 0.44 TCGA-HU-A4G9-01 19 44470960 44470960 C T ZNF221 Nonsense_Mutation p.R436* 0.41 TCGA-HU-A4G9-01 19 45153247 45153248 CA - PVR Frame_Shift_Del p.T199Sfs*30 0.20 TCGA-HU-A4G9-01 19 45317965 45317965 C T BCAM Silent p.Y342Y 0.37 TCGA-HU-A4G9-01 19 45575805 45575805 C T ZNF296 Missense_Mutation p.R161H 0.29 tolerated(0.09) benign(0.005) TCGA-HU-A4G9-01 19 45895174 45895174 C T PPP1R13L Silent p.P593P 0.13 TCGA-HU-A4G9-01 19 46914615 46914615 G A CCDC8 Missense_Mutation p.R485C 0.35 probably_damaging(0.961) TCGA-HU-A4G9-01 19 47951139 47951139 C T SLC8A2 Missense_Mutation p.G564S 0.52 deleterious(0.03) probably_damaging(0.938) TCGA-HU-A4G9-01 19 4816465 4816465 G - TICAM1 Frame_Shift_Del p.P642Hfs*50 0.29 TCGA-HU-A4G9-01 19 48879543 48879544 - C SYNGR4 Frame_Shift_Ins p.R227Pfs*7 0.26 TCGA-HU-A4G9-01 19 48908240 48908240 G A GRIN2D Missense_Mutation p.V239I 0.42 tolerated(1) benign(0.032) TCGA-HU-A4G9-01 19 49404120 49404120 G A NUCB1 Missense_Mutation p.A23T 0.34 tolerated(0.22) benign(0.001) TCGA-HU-A4G9-01 19 49850473 49850473 G - TEAD2 Frame_Shift_Del p.H299Mfs*12 0.30 TCGA-HU-A4G9-01 19 50099948 50099948 G A PRR12 Missense_Mutation p.G786R 0.36 probably_damaging(0.98) TCGA-HU-A4G9-01 19 50102880 50102880 G - PRR12 Frame_Shift_Del p.G1345Afs*26 0.42 TCGA-HU-A4G9-01 19 50128792 50128792 G A PRR12 Silent p.P2013P 0.41 TCGA-HU-A4G9-01 19 50764826 50764826 G A MYH14 Missense_Mutation p.R840Q 0.41 deleterious(0) probably_damaging(0.999) TCGA-HU-A4G9-01 19 51020885 51020885 G A LRRC4B Silent p.H695H 0.38 TCGA-HU-A4G9-01 19 51453318 51453318 G T KLK5 Missense_Mutation p.P43H 0.35 deleterious(0.05) probably_damaging(0.953) TCGA-HU-A4G9-01 19 52327577 52327577 C T FPR3 Silent p.N192N 0.41 TCGA-HU-A4G9-01 19 52537843 52537843 A G ZNF432 Silent p.H363H 0.35 TCGA-HU-A4G9-01 19 54080407 54080407 G T ZNF331 Missense_Mutation p.W198L 0.45 tolerated(0.65) possibly_damaging(0.655) TCGA-HU-A4G9-01 19 54973112 54973112 T C LENG8 3'UTR 0.31 TCGA-HU-A4G9-01 19 55401331 55401333 TTT - FCAR 3'UTR 0.38 TCGA-HU-A4G9-01 19 56228095 56228095 T C NLRP9 Missense_Mutation p.M777V 0.47 tolerated(0.19) benign(0.001) TCGA-HU-A4G9-01 19 57176318 57176318 G A ZNF835 Silent p.C83C 0.56 TCGA-HU-A4G9-01 19 57325147 57325147 C T PEG3 Missense_Mutation p.G1555S 0.44 deleterious(0.05) benign(0.122) TCGA-HU-A4G9-01 19 6040096 6040096 G A RFX2 Silent p.V139V 0.45 TCGA-HU-A4G9-01 19 8201136 8201136 C T FBN3 Missense_Mutation p.G468D 0.44 deleterious(0) probably_damaging(0.997) TCGA-HU-A4G9-01 19 8563446 8563446 G A PRAM1 Missense_Mutation p.P416S 0.36 tolerated(0.09) possibly_damaging(0.559) TCGA-HU-A4G9-01 19 8601234 8601234 C T MYO1F Missense_Mutation p.E649K 0.40 tolerated(0.45) benign(0.329) TCGA-HU-A4G9-01 19 9061788 9061788 G T MUC16 Missense_Mutation p.P8553H 0.28 unknown(0) TCGA-HU-A4G9-01 19 9267982 9267982 C T ZNF317 Silent p.T67T 0.44 TCGA-HU-A4G9-01 19 971946 971946 G A ARID3A Missense_Mutation p.G555S 0.29 tolerated_low_confidence(0.54) unknown(0) TCGA-HU-A4G9-01 19 971952 971952 A G ARID3A Missense_Mutation p.S557G 0.32 tolerated_low_confidence(0.67) unknown(0) TCGA-HU-A4G9-01 1 100672100 100672100 G A DBT Silent p.I370I 0.36 TCGA-HU-A4G9-01 1 101197054 101197054 C T VCAM1 Missense_Mutation p.T502M 0.38 deleterious(0) benign(0.223) TCGA-HU-A4G9-01 1 103354303 103354303 G A COL11A1 Silent p.G1510G 0.57 TCGA-HU-A4G9-01 1 104297194 104297194 C T AMY1C Nonsense_Mutation p.R318* 0.23 TCGA-HU-A4G9-01 1 10699614 10699614 G A CASZ1 Silent p.A1555A 0.86 TCGA-HU-A4G9-01 1 10725588 10725588 G A CASZ1 Silent p.P19P 0.67 TCGA-HU-A4G9-01 1 109756660 109756660 C A SARS Missense_Mutation p.P16T 0.40 deleterious(0) possibly_damaging(0.859) TCGA-HU-A4G9-01 1 110582098 110582098 C T STRIP1 Missense_Mutation p.T181M 0.36 deleterious(0.03) possibly_damaging(0.873) TCGA-HU-A4G9-01 1 110754518 110754519 - G KCNC4 Frame_Shift_Ins p.I135Hfs*47 0.33 TCGA-HU-A4G9-01 1 11167517 11167517 G A MTOR 3'UTR 0.41 TCGA-HU-A4G9-01 1 112525378 112525378 C T KCND3 5'UTR 0.47 TCGA-HU-A4G9-01 1 114185046 114185046 A - MAGI3 Frame_Shift_Del p.N626Mfs*5 0.29 TCGA-HU-A4G9-01 1 118488721 118488721 G C WDR3 Missense_Mutation p.Q447H 0.38 deleterious(0.02) probably_damaging(0.957) TCGA-HU-A4G9-01 1 119962129 119962129 C T HSD3B2 Silent p.V77V 0.80 TCGA-HU-A4G9-01 1 120165559 120165559 C T ZNF697 Silent p.Q469Q 0.33 TCGA-HU-A4G9-01 1 12908039 12908039 G A HNRNPCL1 Missense_Mutation p.A35V 0.05 tolerated(0.07) benign(0.051) TCGA-HU-A4G9-01 1 13474888 13474888 G A PRAMEF18 Missense_Mutation p.A414V 0.41 tolerated(0.18) probably_damaging(0.982) TCGA-HU-A4G9-01 1 144859846 144859846 C T PDE4DIP Missense_Mutation p.A2080T 0.23 tolerated(0.17) benign(0.287) TCGA-HU-A4G9-01 1 144879338 144879338 A G PDE4DIP Missense_Mutation p.V1371A 0.24 tolerated(0.06) benign(0.389) TCGA-HU-A4G9-01 1 145075648 145075648 G A PDE4DIP Missense_Mutation p.A72V 0.10 tolerated_low_confidence(0.08) probably_damaging(0.921) TCGA-HU-A4G9-01 1 1454368 1454368 G A ATAD3A Missense_Mutation p.R219Q 0.18 deleterious(0.02) benign(0.382) TCGA-HU-A4G9-01 1 146751709 146751709 T C CHD1L Missense_Mutation p.I517T 0.41 deleterious(0) probably_damaging(0.933) TCGA-HU-A4G9-01 1 147091501 147091501 C - BCL9 Frame_Shift_Del p.P516Lfs*5 0.37 TCGA-HU-A4G9-01 1 150418791 150418791 A - RPRD2 Frame_Shift_Del p.N263Tfs*5 0.32 TCGA-HU-A4G9-01 1 151262928 151262928 G A ZNF687 Missense_Mutation p.R1033H 0.43 deleterious(0) probably_damaging(0.997) TCGA-HU-A4G9-01 1 151318748 151318748 C G RFX5 Missense_Mutation p.A17P 0.44 tolerated_low_confidence(0.11) benign(0.004) TCGA-HU-A4G9-01 1 151491681 151491681 G A CGN Missense_Mutation p.R229H 0.41 tolerated(0.22) benign(0.006) TCGA-HU-A4G9-01 1 152770577 152770577 G A LCE1D Missense_Mutation p.G103S 0.32 unknown(0) TCGA-HU-A4G9-01 1 154961353 154961353 A G FLAD1 Intron 0.39 TCGA-HU-A4G9-01 1 155205593 155205593 C A GBA Missense_Mutation p.A423S 0.29 deleterious(0.01) probably_damaging(0.992) TCGA-HU-A4G9-01 1 156108328 156108328 C T LMNA Missense_Mutation p.S583L 0.34 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-HU-A4G9-01 1 156146501 156146501 A G SEMA4A Missense_Mutation p.R667G 0.40 tolerated(0.29) benign(0.002) TCGA-HU-A4G9-01 1 158152725 158152725 T G CD1D Missense_Mutation p.L222R 0.84 deleterious(0) probably_damaging(1) TCGA-HU-A4G9-01 1 159900598 159900599 - C IGSF9 Frame_Shift_Ins p.A566Gfs*86 0.35 TCGA-HU-A4G9-01 1 160054211 160054211 C T KCNJ9 Nonsense_Mutation p.Q131* 0.37 TCGA-HU-A4G9-01 1 160063813 160063814 GT - IGSF8 Frame_Shift_Del p.H197Pfs*39 0.27 TCGA-HU-A4G9-01 1 161495291 161495291 G T HSPA6 Missense_Mutation p.Q281H 0.40 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-HU-A4G9-01 1 161816299 161816299 G A ATF6 Silent p.R416R 0.33 TCGA-HU-A4G9-01 1 16458317 16458317 G A EPHA2 Missense_Mutation p.R792W 0.38 deleterious(0) probably_damaging(1) TCGA-HU-A4G9-01 1 165513572 165513572 C T LRRC52 Silent p.L13L 0.51 TCGA-HU-A4G9-01 1 167096928 167096928 T C DUSP27 Missense_Mutation p.Y854H 0.38 deleterious(0) probably_damaging(0.999) TCGA-HU-A4G9-01 1 1688041 1688041 T C NADK Missense_Mutation p.M279V 0.33 deleterious(0) benign(0.262) TCGA-HU-A4G9-01 1 169822808 169822809 - A C1orf112 3'UTR 0.29 TCGA-HU-A4G9-01 1 176762724 176762724 C - PAPPA2 Frame_Shift_Del p.S1686Vfs*4 0.35 TCGA-HU-A4G9-01 1 180063357 180063357 A G CEP350 Missense_Mutation p.N2706S 0.38 benign(0.005) TCGA-HU-A4G9-01 1 181767673 181767673 C - CACNA1E Frame_Shift_Del p.Q2217Sfs*79 0.24 TCGA-HU-A4G9-01 1 18809240 18809240 G A KLHDC7A Missense_Mutation p.G589R 0.37 deleterious(0.02) probably_damaging(1) TCGA-HU-A4G9-01 1 196695710 196695710 A G CFH Missense_Mutation p.R662G 0.14 tolerated(0.27) benign(0.006) TCGA-HU-A4G9-01 1 201184907 201184907 G A IGFN1 Missense_Mutation p.S3079N 0.40 benign(0.236) TCGA-HU-A4G9-01 1 201253030 201253030 G A PKP1 Missense_Mutation p.R67Q 0.53 tolerated(0.42) benign(0.007) TCGA-HU-A4G9-01 1 202992135 202992135 G A TMEM183A Nonsense_Mutation p.W366* 0.31 TCGA-HU-A4G9-01 1 203677055 203677055 C T ATP2B4 Silent p.T460T 0.43 TCGA-HU-A4G9-01 1 204399062 204399062 G A PIK3C2B Missense_Mutation p.P1462L 0.39 deleterious(0.04) probably_damaging(0.96) TCGA-HU-A4G9-01 1 207644227 207644227 G - CR2 Frame_Shift_Del p.V458Cfs*22 0.29 TCGA-HU-A4G9-01 1 207818619 207818619 G A CR1L Missense_Mutation p.R14Q 0.43 tolerated_low_confidence(0.52) benign(0.002) TCGA-HU-A4G9-01 1 208390360 208390360 G C PLXNA2 Missense_Mutation p.A303G 0.24 tolerated(0.61) benign(0) TCGA-HU-A4G9-01 1 212273987 212273987 A G DTL Missense_Mutation p.K552R 0.34 deleterious(0) probably_damaging(0.999) TCGA-HU-A4G9-01 1 212788387 212788387 G T ATF3 Missense_Mutation p.Q8H 0.46 deleterious(0.03) benign(0.36) TCGA-HU-A4G9-01 1 214705526 214705527 - C PTPN14 Intron 0.22 TCGA-HU-A4G9-01 1 215747171 215747171 T - KCTD3 Frame_Shift_Del p.S45Pfs*4 0.40 TCGA-HU-A4G9-01 1 216497693 216497693 A C USH2A Missense_Mutation p.V382G 0.53 probably_damaging(0.994) TCGA-HU-A4G9-01 1 22174580 22174580 C T HSPG2 Missense_Mutation p.G2582S 0.64 probably_damaging(1) TCGA-HU-A4G9-01 1 228558394 228558394 G A OBSCN Silent p.A7684A 0.48 TCGA-HU-A4G9-01 1 228566322 228566322 C G OBSCN Silent p.G8866G 0.25 TCGA-HU-A4G9-01 1 229643960 229643960 T A NUP133 Missense_Mutation p.T13S 0.44 tolerated(1) benign(0.003) TCGA-HU-A4G9-01 1 23111249 23111249 G A EPHB2 Missense_Mutation p.R164Q 0.37 deleterious(0) probably_damaging(0.998) TCGA-HU-A4G9-01 1 231471450 231471450 A - EXOC8 Frame_Shift_Del p.L681Yfs*27 0.29 TCGA-HU-A4G9-01 1 233134088 233134088 C T PCNXL2 Silent p.P1900P 0.41 TCGA-HU-A4G9-01 1 233313614 233313614 T - PCNXL2 Frame_Shift_Del p.K1069Nfs*19 0.24 TCGA-HU-A4G9-01 1 240256024 240256026 GCA - FMN2 In_Frame_Del p.Q212del 0.26 TCGA-HU-A4G9-01 1 242428713 242428713 G A PLD5 Missense_Mutation p.S178L 0.08 deleterious(0.01) benign(0.44) TCGA-HU-A4G9-01 1 247588106 247588106 G - NLRP3 Frame_Shift_Del p.G455Efs*49 0.27 TCGA-HU-A4G9-01 1 247588307 247588307 T A NLRP3 Missense_Mutation p.I521N 0.45 deleterious(0.01) benign(0.013) TCGA-HU-A4G9-01 1 248309098 248309098 T C OR2M5 Missense_Mutation p.S217P 0.39 deleterious(0) probably_damaging(1) TCGA-HU-A4G9-01 1 248402974 248402974 C T OR2M4 Silent p.V248V 0.42 TCGA-HU-A4G9-01 1 27100207 27100207 C T ARID1A Nonsense_Mutation p.R1335* 0.37 TCGA-HU-A4G9-01 1 27677388 27677388 C T SYTL1 Missense_Mutation p.P370L 0.47 deleterious(0.01) possibly_damaging(0.778) TCGA-HU-A4G9-01 1 27691373 27691373 A G MAP3K6 Missense_Mutation p.L124P 0.34 tolerated(0.15) possibly_damaging(0.837) TCGA-HU-A4G9-01 1 29641884 29641884 C T PTPRU Silent p.S1086S 0.36 TCGA-HU-A4G9-01 1 32127954 32127954 T C COL16A1 Missense_Mutation p.D1221G 0.20 unknown(0) TCGA-HU-A4G9-01 1 32557559 32557559 A G TMEM39B Missense_Mutation p.S292G 0.28 deleterious(0.02) possibly_damaging(0.903) TCGA-HU-A4G9-01 1 32740365 32740365 C T LCK Missense_Mutation p.R45W 0.30 tolerated(0.07) benign(0.276) TCGA-HU-A4G9-01 1 33134370 33134370 G A RBBP4 Missense_Mutation p.R172H 0.08 tolerated(0.06) benign(0.011) TCGA-HU-A4G9-01 1 33959045 33959045 T C ZSCAN20 Missense_Mutation p.L568P 0.38 deleterious(0) probably_damaging(1) TCGA-HU-A4G9-01 1 35484912 35484912 A - ZMYM6 Intron 0.38 TCGA-HU-A4G9-01 1 40309782 40309782 C T TRIT1 Missense_Mutation p.E409K 0.38 deleterious(0.01) probably_damaging(0.913) TCGA-HU-A4G9-01 1 42048716 42048716 G - HIVEP3 Frame_Shift_Del p.R585Gfs*3 0.31 TCGA-HU-A4G9-01 1 43204235 43204236 - C CLDN19 Frame_Shift_Ins p.A82Gfs*79 0.34 TCGA-HU-A4G9-01 1 44131409 44131409 C T KDM4A Silent p.L222L 0.45 TCGA-HU-A4G9-01 1 44447007 44447012 AGCAGC - B4GALT2 In_Frame_Del p.S93_S94del 0.28 TCGA-HU-A4G9-01 1 44877843 44877843 T G RNF220 Missense_Mutation p.L25R 0.50 deleterious(0) benign(0.413) TCGA-HU-A4G9-01 1 45288153 45288154 - G PTCH2 Frame_Shift_Ins p.W1183Lfs*7 0.30 TCGA-HU-A4G9-01 1 47280920 47280920 C T CYP4B1 Nonsense_Mutation p.Q353* 0.18 TCGA-HU-A4G9-01 1 47512174 47512174 G A CYP4X1 Missense_Mutation p.C370Y 0.32 deleterious(0.02) probably_damaging(1) TCGA-HU-A4G9-01 1 52246930 52246930 A - OSBPL9 Frame_Shift_Del p.K462Sfs*27 0.34 TCGA-HU-A4G9-01 1 52305912 52305912 T - NRD1 Frame_Shift_Del p.T206Lfs*17 0.29 TCGA-HU-A4G9-01 1 53153414 53153414 A G COA7 Missense_Mutation p.V225A 0.35 tolerated(0.77) benign(0.002) TCGA-HU-A4G9-01 1 6181285 6181285 C T CHD5 Missense_Mutation p.A1598T 0.47 tolerated_low_confidence(0.28) benign(0.012) TCGA-HU-A4G9-01 1 6206467 6206467 G A CHD5 Missense_Mutation p.T536M 0.53 tolerated(0.09) benign(0.244) TCGA-HU-A4G9-01 1 6257785 6257785 T - RPL22 Frame_Shift_Del p.K15Rfs*5 0.43 TCGA-HU-A4G9-01 1 67833651 67833651 C T IL12RB2 Nonsense_Mutation p.Q468* 0.36 TCGA-HU-A4G9-01 1 68948473 68948473 T C DEPDC1 Missense_Mutation p.K340E 0.47 deleterious(0) probably_damaging(0.998) TCGA-HU-A4G9-01 1 75602895 75602896 GT - LHX8 Frame_Shift_Del p.C75Qfs*17 0.44 TCGA-HU-A4G9-01 1 76344799 76344799 T C MSH4 Missense_Mutation p.S555P 0.50 tolerated(0.34) benign(0.001) TCGA-HU-A4G9-01 1 84649798 84649798 C T PRKACB Nonsense_Mutation p.R153* 0.40 TCGA-HU-A4G9-01 1 879664 879664 C T SAMD11 3'UTR 0.47 TCGA-HU-A4G9-01 1 9098963 9098963 C T SLC2A5 Missense_Mutation p.R341Q 0.33 deleterious(0) probably_damaging(0.997) TCGA-HU-A4G9-01 1 93667456 93667456 C T CCDC18 Nonsense_Mutation p.R290* 0.17 TCGA-HU-A4G9-01 1 948911 948911 T C ISG15 5'UTR 0.44 TCGA-HU-A4G9-01 1 97272007 97272007 C T PTBP2 Silent p.F359F 0.39 TCGA-HU-A4G9-01 20 13071817 13071817 G A SPTLC3 Missense_Mutation p.A232T 0.39 deleterious(0) probably_damaging(0.99) TCGA-HU-A4G9-01 20 2298001 2298001 C T TGM3 Missense_Mutation p.R285W 0.41 deleterious(0) probably_damaging(1) TCGA-HU-A4G9-01 20 23729754 23729754 C - CST1 Frame_Shift_Del p.V81* 0.33 TCGA-HU-A4G9-01 20 3007386 3007386 A G PTPRA Silent p.P556P 0.34 TCGA-HU-A4G9-01 20 33296586 33296586 C - TP53INP2 Frame_Shift_Del p.E17Kfs*50 0.35 TCGA-HU-A4G9-01 20 33764529 33764529 G A PROCR Silent p.S210S 0.40 TCGA-HU-A4G9-01 20 35060934 35060934 G A DLGAP4 Missense_Mutation p.A272T 0.52 tolerated(0.38) benign(0.072) TCGA-HU-A4G9-01 20 35521451 35521451 G T SAMHD1 Missense_Mutation p.P589T 0.23 deleterious(0.01) benign(0.403) TCGA-HU-A4G9-01 20 3675129 3675129 G A SIGLEC1 Nonsense_Mutation p.R999* 0.14 TCGA-HU-A4G9-01 20 37146233 37146233 C - RALGAPB Frame_Shift_Del p.P381Hfs*11 0.29 TCGA-HU-A4G9-01 20 37357202 37357202 G A SLC32A1 Missense_Mutation p.G500S 0.41 deleterious(0.01) probably_damaging(0.992) TCGA-HU-A4G9-01 20 39801287 39801287 T C PLCG1 Splice_Site p.X1044_splice 0.49 TCGA-HU-A4G9-01 20 40739003 40739003 G - PTPRT Frame_Shift_Del p.P1075Rfs*6 0.22 TCGA-HU-A4G9-01 20 41419958 41419958 G A PTPRT Silent p.N121N 0.34 TCGA-HU-A4G9-01 20 44641175 44641175 G C MMP9 Silent p.G428G 0.34 TCGA-HU-A4G9-01 20 44757522 44757522 C - CD40 Frame_Shift_Del p.H228Tfs*85 0.26 TCGA-HU-A4G9-01 20 47864574 47864574 G A ZNFX1 Missense_Mutation p.R1663W 0.41 deleterious(0) possibly_damaging(0.667) TCGA-HU-A4G9-01 20 48252915 48252915 G A B4GALT5 Silent p.Y367Y 0.44 TCGA-HU-A4G9-01 20 4837467 4837467 C A SLC23A2 3'UTR 0.27 TCGA-HU-A4G9-01 20 50408073 50408073 G A SALL4 Missense_Mutation p.P317S 0.39 tolerated(0.14) possibly_damaging(0.543) TCGA-HU-A4G9-01 20 56140815 56140816 - GA PCK1 Frame_Shift_Ins p.I612Rfs*5 0.33 TCGA-HU-A4G9-01 20 60886294 60886294 G A LAMA5 Nonsense_Mutation p.R3338* 0.44 TCGA-HU-A4G9-01 20 62551083 62551083 G A DNAJC5 Intron 0.79 TCGA-HU-A4G9-01 21 27840847 27840848 - G CYYR1 Frame_Shift_Ins p.P147Sfs*48 0.27 TCGA-HU-A4G9-01 21 34925673 34925673 C T SON Missense_Mutation p.S1379L 0.24 benign(0.32) TCGA-HU-A4G9-01 21 37581040 37581040 G A DOPEY2 Silent p.S173S 0.36 TCGA-HU-A4G9-01 21 37605196 37605196 C A DOPEY2 Silent p.S815S 0.43 TCGA-HU-A4G9-01 21 38309376 38309376 C T HLCS Silent p.A123A 0.42 TCGA-HU-A4G9-01 21 38524243 38524243 A - TTC3 Frame_Shift_Del p.E779Kfs*5 0.33 TCGA-HU-A4G9-01 21 46226885 46226885 A G SUMO3 Missense_Mutation p.L98P 0.33 deleterious_low_confidence(0.01) benign(0.002) TCGA-HU-A4G9-01 21 46916425 46916425 C - COL18A1 Frame_Shift_Del p.P1022Qfs*67 0.31 TCGA-HU-A4G9-01 21 47571482 47571482 C A FTCD Missense_Mutation p.G209V 0.46 tolerated(0.11) probably_damaging(0.972) TCGA-HU-A4G9-01 21 47801686 47801686 G T PCNT Missense_Mutation p.Q1081H 0.04 benign(0.162) TCGA-HU-A4G9-01 21 47952045 47952045 G A DIP2A Silent p.A400A 0.38 TCGA-HU-A4G9-01 22 17589282 17589282 C T IL17RA Silent p.Y391Y 0.35 TCGA-HU-A4G9-01 22 17662900 17662900 C G CECR1 Missense_Mutation p.V418L 0.34 deleterious(0.04) possibly_damaging(0.887) TCGA-HU-A4G9-01 22 18300311 18300311 G - MICAL3 Frame_Shift_Del p.R1706Afs*24 0.44 TCGA-HU-A4G9-01 22 19175080 19175080 T C CLTCL1 Missense_Mutation p.H1532R 0.48 tolerated(0.35) benign(0.001) TCGA-HU-A4G9-01 22 20131091 20131091 G A ZDHHC8 Silent p.L646L 0.73 TCGA-HU-A4G9-01 22 22569594 22569594 A G IGLV10-54 Missense_Mutation p.T96A 0.38 tolerated_low_confidence(0.09) benign(0.009) TCGA-HU-A4G9-01 22 23248691 23248691 C G IGLC3 Missense_Mutation p.Q61E 0.16 benign(0.163) TCGA-HU-A4G9-01 22 23438292 23438292 C T GNAZ Missense_Mutation p.A137V 0.36 tolerated(1) benign(0.001) TCGA-HU-A4G9-01 22 24562756 24562756 C T CABIN1 Silent p.P1719P 0.44 TCGA-HU-A4G9-01 22 29747232 29747232 G A AP1B1 Silent p.Y361Y 0.35 TCGA-HU-A4G9-01 22 30776328 30776328 G A RNF215 Silent p.L269L 0.40 TCGA-HU-A4G9-01 22 30891933 30891933 G A SEC14L4 Silent p.S52S 0.31 TCGA-HU-A4G9-01 22 31491333 31491333 G A SMTN Silent p.A559A 0.47 TCGA-HU-A4G9-01 22 33255323 33255324 - C TIMP3 Frame_Shift_Ins p.D202Gfs*2 0.41 TCGA-HU-A4G9-01 22 36698705 36698705 T C MYH9 Missense_Mutation p.Q803R 0.44 benign(0.233) TCGA-HU-A4G9-01 22 36737461 36737462 - G MYH9 Frame_Shift_Ins p.H149Sfs*27 0.21 TCGA-HU-A4G9-01 22 37171798 37171798 G A IFT27 5'UTR 0.38 TCGA-HU-A4G9-01 22 37462027 37462028 - C TMPRSS6 3'UTR 0.23 TCGA-HU-A4G9-01 22 38021822 38021822 T C GGA1 Missense_Mutation p.L320P 0.41 deleterious(0.03) possibly_damaging(0.905) TCGA-HU-A4G9-01 22 38470380 38470380 C T PICK1 Missense_Mutation p.R301C 0.26 deleterious(0) probably_damaging(0.997) TCGA-HU-A4G9-01 22 38884267 38884267 A - DDX17 Intron 0.37 TCGA-HU-A4G9-01 22 39175613 39175613 G A DNAL4 Silent p.A53A 0.25 TCGA-HU-A4G9-01 22 41609902 41609903 TG - L3MBTL2 Frame_Shift_Del p.C90* 0.30 TCGA-HU-A4G9-01 22 41653969 41653969 C T RANGAP1 Missense_Mutation p.A253T 0.05 tolerated(0.16) benign(0.037) TCGA-HU-A4G9-01 22 42423079 42423079 C T WBP2NL Missense_Mutation p.A275V 0.04 tolerated_low_confidence(0.44) possibly_damaging(0.483) TCGA-HU-A4G9-01 22 43010846 43010846 C T POLDIP3 Silent p.L6L 0.29 TCGA-HU-A4G9-01 22 43735179 43735179 G A SCUBE1 Nonsense_Mutation p.Q51* 0.47 TCGA-HU-A4G9-01 22 46860057 46860057 C T CELSR1 Missense_Mutation p.V1244I 0.49 tolerated(1) benign(0.031) TCGA-HU-A4G9-01 22 46931227 46931227 C - CELSR1 Frame_Shift_Del p.G614Afs*54 0.43 TCGA-HU-A4G9-01 22 47274558 47274558 G A TBC1D22A Missense_Mutation p.R216Q 0.34 deleterious(0.03) benign(0.226) TCGA-HU-A4G9-01 22 50658779 50658779 C T TUBGCP6 Missense_Mutation p.G1337R 0.34 tolerated(0.06) benign(0.015) TCGA-HU-A4G9-01 22 50901738 50901738 C T SBF1 Missense_Mutation p.V625I 0.22 tolerated(0.29) benign(0.053) TCGA-HU-A4G9-01 2 103124628 103124628 G A SLC9A4 Missense_Mutation p.R430Q 0.46 deleterious(0) probably_damaging(0.991) TCGA-HU-A4G9-01 2 106498349 106498349 G A NCK2 Silent p.A264A 0.16 TCGA-HU-A4G9-01 2 107423211 107423211 G A ST6GAL2 Missense_Mutation p.R505C 0.57 probably_damaging(0.946) TCGA-HU-A4G9-01 2 108487646 108487646 A G RGPD4 Silent p.S1062S 0.34 TCGA-HU-A4G9-01 2 114257147 114257147 C T FOXD4L1 Missense_Mutation p.P105L 0.47 tolerated(0.22) benign(0.005) TCGA-HU-A4G9-01 2 130832316 130832316 C T POTEF Missense_Mutation p.R910H 0.11 deleterious_low_confidence(0.03) probably_damaging(0.962) TCGA-HU-A4G9-01 2 133540153 133540153 G A NCKAP5 Missense_Mutation p.R1411C 0.47 tolerated(0.2) benign(0.001) TCGA-HU-A4G9-01 2 135215710 135215710 G T TMEM163 Missense_Mutation p.F234L 0.39 tolerated(0.14) benign(0.049) TCGA-HU-A4G9-01 2 138000026 138000026 G T THSD7B Splice_Site p.X717_splice 0.29 TCGA-HU-A4G9-01 2 148683686 148683686 A - ACVR2A Frame_Shift_Del p.K437Rfs*5 0.82 TCGA-HU-A4G9-01 2 1491735 1491735 G A TPO Silent p.L580L 0.42 TCGA-HU-A4G9-01 2 152581448 152581448 C A NEB Missense_Mutation p.A144S 0.38 probably_damaging(1) TCGA-HU-A4G9-01 2 158390496 158390496 G A ACVR1C Silent p.R472R 0.40 TCGA-HU-A4G9-01 2 166535568 166535568 G A CSRNP3 Missense_Mutation p.G355R 0.36 tolerated(0.06) possibly_damaging(0.875) TCGA-HU-A4G9-01 2 179395589 179395589 T - TTN Frame_Shift_Del p.K35251Nfs*3 0.32 TCGA-HU-A4G9-01 2 190718672 190718672 G A PMS1 Missense_Mutation p.R277Q 0.41 deleterious(0.04) probably_damaging(0.924) TCGA-HU-A4G9-01 2 197986076 197986076 C A ANKRD44 Missense_Mutation p.G296W 0.29 deleterious(0) probably_damaging(1) TCGA-HU-A4G9-01 2 201362476 201362476 C A KCTD18 Missense_Mutation p.G221C 0.43 deleterious(0) probably_damaging(0.996) TCGA-HU-A4G9-01 2 204150338 204150338 G A CYP20A1 Missense_Mutation p.C285Y 0.21 deleterious(0) probably_damaging(0.937) TCGA-HU-A4G9-01 2 20463159 20463159 G A PUM2 Nonsense_Mutation p.R674* 0.44 TCGA-HU-A4G9-01 2 20494174 20494174 T C PUM2 Missense_Mutation p.Q372R 0.32 deleterious_low_confidence(0.02) benign(0.209) TCGA-HU-A4G9-01 2 206364664 206364664 G A PARD3B Missense_Mutation p.R968Q 0.35 deleterious(0) probably_damaging(0.945) TCGA-HU-A4G9-01 2 216214455 216214455 A T ATIC 3'UTR 0.35 TCGA-HU-A4G9-01 2 216232726 216232726 G A FN1 Missense_Mutation p.T2293M 0.48 tolerated(0.09) benign(0.024) TCGA-HU-A4G9-01 2 216240005 216240005 T G FN1 Missense_Mutation p.K2030T 0.33 tolerated(0.09) possibly_damaging(0.829) TCGA-HU-A4G9-01 2 225266089 225266089 A C FAM124B Missense_Mutation p.C133G 0.48 tolerated(0.46) benign(0.002) TCGA-HU-A4G9-01 2 231326044 231326044 A - SP100 Frame_Shift_Del p.K298Rfs*26 0.28 TCGA-HU-A4G9-01 2 232393149 232393149 G A NMUR1 Missense_Mutation p.P195S 0.38 deleterious(0) probably_damaging(1) TCGA-HU-A4G9-01 2 233246214 233246214 C T ALPP Silent p.P439P 0.42 TCGA-HU-A4G9-01 2 236877175 236877175 C T AGAP1 Missense_Mutation p.P518L 0.39 deleterious(0.04) benign(0.279) TCGA-HU-A4G9-01 2 238283516 238283516 C T COL6A3 Missense_Mutation p.S1073N 0.32 probably_damaging(0.995) TCGA-HU-A4G9-01 2 238296516 238296516 G A COL6A3 Missense_Mutation p.R341C 0.36 probably_damaging(0.999) TCGA-HU-A4G9-01 2 240002800 240002800 G A HDAC4 Missense_Mutation p.A909V 0.27 deleterious(0.03) possibly_damaging(0.835) TCGA-HU-A4G9-01 2 241418996 241418996 T C ANKMY1 3'UTR 0.40 TCGA-HU-A4G9-01 2 26667583 26667583 G T DRC1 Splice_Site p.X388_splice 0.60 TCGA-HU-A4G9-01 2 27356049 27356049 C T PREB Missense_Mutation p.C161Y 0.41 tolerated(0.06) possibly_damaging(0.701) TCGA-HU-A4G9-01 2 29136984 29136984 T C WDR43 Missense_Mutation p.I219T 0.38 tolerated(0.75) benign(0.003) TCGA-HU-A4G9-01 2 31483572 31483572 C T EHD3 Silent p.Y233Y 0.36 TCGA-HU-A4G9-01 2 33589400 33589400 G A LTBP1 Missense_Mutation p.C1506Y 0.47 deleterious(0) probably_damaging(1) TCGA-HU-A4G9-01 2 33590553 33590554 - C LTBP1 Frame_Shift_Ins p.L1567Pfs*6 0.38 TCGA-HU-A4G9-01 2 3469465 3469465 A G TRAPPC12 Missense_Mutation p.Q592R 0.41 deleterious(0) probably_damaging(0.934) TCGA-HU-A4G9-01 2 43452885 43452886 TC - ZFP36L2 Frame_Shift_Del p.K20Ifs*63 0.26 TCGA-HU-A4G9-01 2 46234741 46234741 C T PRKCE Missense_Mutation p.R402C 0.58 deleterious(0) benign(0.037) TCGA-HU-A4G9-01 2 46987287 46987287 C T SOCS5 3'UTR 0.42 TCGA-HU-A4G9-01 2 48915172 48915172 A - LHCGR Frame_Shift_Del p.F588Lfs*14 0.35 TCGA-HU-A4G9-01 2 50574000 50574001 - C NRXN1 Intron 0.44 TCGA-HU-A4G9-01 2 54856759 54856759 C T SPTBN1 Missense_Mutation p.R830W 0.38 tolerated(0.08) probably_damaging(0.987) TCGA-HU-A4G9-01 2 62373950 62373950 C T AC018462.2 RNA 0.30 TCGA-HU-A4G9-01 2 71160188 71160188 C - VAX2 Frame_Shift_Del p.P244Lfs*32 0.35 TCGA-HU-A4G9-01 2 74326560 74326560 T C TET3 Missense_Mutation p.L1007P 0.45 deleterious(0) probably_damaging(1) TCGA-HU-A4G9-01 2 79255050 79255050 A G REG3G Missense_Mutation p.R151G 0.35 tolerated(0.18) benign(0.039) TCGA-HU-A4G9-01 3 101378673 101378673 C T ZBTB11 Missense_Mutation p.R667Q 0.05 deleterious(0.04) probably_damaging(1) TCGA-HU-A4G9-01 3 10142987 10142987 C T FANCD2 3'Flank 0.37 TCGA-HU-A4G9-01 3 108220694 108220694 G A MYH15 Silent p.S88S 0.28 TCGA-HU-A4G9-01 3 111700631 111700631 C A ABHD10 Missense_Mutation p.A48D 0.31 tolerated_low_confidence(0.06) benign(0.009) TCGA-HU-A4G9-01 3 112357944 112357944 T A CCDC80 Missense_Mutation p.E270V 0.12 deleterious(0) probably_damaging(0.937) TCGA-HU-A4G9-01 3 113320472 113320472 C T SIDT1 Silent p.A361A 0.31 TCGA-HU-A4G9-01 3 113329946 113329946 C A SIDT1 Silent p.A604A 0.22 TCGA-HU-A4G9-01 3 113375167 113375167 G T KIAA2018 Missense_Mutation p.R1788S 0.31 probably_damaging(0.999) TCGA-HU-A4G9-01 3 11596414 11596414 G T ATG7 3'UTR 0.36 TCGA-HU-A4G9-01 3 121413503 121413503 T - GOLGB1 Frame_Shift_Del p.N1956Mfs*8 0.23 TCGA-HU-A4G9-01 3 121573659 121573659 A - EAF2 Frame_Shift_Del p.T112Qfs*30 0.30 TCGA-HU-A4G9-01 3 122808030 122808030 T C PDIA5 Missense_Mutation p.W20R 0.32 tolerated(0.35) benign(0.001) TCGA-HU-A4G9-01 3 123022987 123022987 C T ADCY5 Missense_Mutation p.R829Q 0.21 tolerated(1) benign(0.003) TCGA-HU-A4G9-01 3 123383021 123383021 C T MYLK Missense_Mutation p.G1306S 0.27 deleterious(0) benign(0.301) TCGA-HU-A4G9-01 3 124103833 124103833 C T KALRN Missense_Mutation p.R636W 0.27 deleterious(0) unknown(0) TCGA-HU-A4G9-01 3 127339709 127339709 C T MCM2 Missense_Mutation p.R812C 0.09 deleterious(0) probably_damaging(0.915) TCGA-HU-A4G9-01 3 127642066 127642066 T A KBTBD12 Silent p.P54P 0.31 TCGA-HU-A4G9-01 3 128991652 128991652 G A COPG1 Missense_Mutation p.A721T 0.38 tolerated(0.59) benign(0.002) TCGA-HU-A4G9-01 3 132193882 132193882 G A DNAJC13 Missense_Mutation p.E800K 0.20 deleterious(0.01) possibly_damaging(0.806) TCGA-HU-A4G9-01 3 132298379 132298379 T - ACAD11 Frame_Shift_Del p.I549Lfs*21 0.17 TCGA-HU-A4G9-01 3 13461671 13461671 G A NUP210 Missense_Mutation p.A19V 0.39 tolerated(0.91) unknown(0) TCGA-HU-A4G9-01 3 137822381 137822381 G A DZIP1L Missense_Mutation p.R145W 0.26 deleterious(0.01) benign(0.023) TCGA-HU-A4G9-01 3 137886126 137886126 A C DBR1 Missense_Mutation p.F171V 0.35 deleterious(0) possibly_damaging(0.53) TCGA-HU-A4G9-01 3 138116242 138116242 C T MRAS Silent p.I90I 0.25 TCGA-HU-A4G9-01 3 142142403 142142403 G A XRN1 Missense_Mutation p.R237W 0.35 deleterious(0) probably_damaging(0.937) TCGA-HU-A4G9-01 3 142681449 142681449 T C PAQR9 Missense_Mutation p.T244A 0.30 tolerated(0.09) probably_damaging(0.983) TCGA-HU-A4G9-01 3 14489115 14489115 T C SLC6A6 Silent p.I130I 0.29 TCGA-HU-A4G9-01 3 150480304 150480304 G A SIAH2 Silent p.C111C 0.34 TCGA-HU-A4G9-01 3 150877786 150877786 C - MED12L Frame_Shift_Del p.G338Afs*4 0.26 TCGA-HU-A4G9-01 3 150916134 150916134 T G GPR171 3'UTR 0.28 TCGA-HU-A4G9-01 3 150917110 150917110 A - GPR171 Frame_Shift_Del p.Y22Ifs*2 0.28 TCGA-HU-A4G9-01 3 151463416 151463416 G A AADACL2 Missense_Mutation p.C184Y 0.25 deleterious(0) probably_damaging(0.989) TCGA-HU-A4G9-01 3 154145305 154145305 T - GPR149 Frame_Shift_Del p.I392Sfs*21 0.27 TCGA-HU-A4G9-01 3 155652794 155652794 G A GMPS Missense_Mutation p.R589H 0.21 deleterious(0) probably_damaging(0.991) TCGA-HU-A4G9-01 3 156413783 156413783 C T TIPARP Missense_Mutation p.R406C 0.35 deleterious(0.02) possibly_damaging(0.453) TCGA-HU-A4G9-01 3 169579523 169579523 T - LRRC31 Frame_Shift_Del p.K85Rfs*7 0.23 TCGA-HU-A4G9-01 3 170725022 170725022 A G SLC2A2 Missense_Mutation p.I176T 0.21 deleterious(0) possibly_damaging(0.864) TCGA-HU-A4G9-01 3 182597414 182597414 A G ATP11B Missense_Mutation p.M795V 0.31 deleterious(0) benign(0.347) TCGA-HU-A4G9-01 3 183756689 183756689 G A HTR3D Missense_Mutation p.A431T 0.30 tolerated(1) benign(0.006) TCGA-HU-A4G9-01 3 184062665 184062665 G A FAM131A Silent p.T336T 0.26 TCGA-HU-A4G9-01 3 186456939 186456939 T C KNG1 Missense_Mutation p.C328R 0.33 deleterious(0) probably_damaging(1) TCGA-HU-A4G9-01 3 194080702 194080702 G A LRRC15 Silent p.D363D 0.28 TCGA-HU-A4G9-01 3 194118269 194118269 G A GP5 Missense_Mutation p.T248M 0.26 deleterious(0) probably_damaging(0.998) TCGA-HU-A4G9-01 3 194366916 194366916 A G LSG1 Missense_Mutation p.Y534H 0.28 deleterious(0.03) benign(0.214) TCGA-HU-A4G9-01 3 194407806 194407806 G A FAM43A Missense_Mutation p.R84H 0.20 deleterious(0.01) possibly_damaging(0.843) TCGA-HU-A4G9-01 3 33907950 33907950 C T PDCD6IP Missense_Mutation p.P852L 0.27 deleterious(0.01) unknown(0) TCGA-HU-A4G9-01 3 36763063 36763063 A G DCLK3 Missense_Mutation p.C514R 0.62 deleterious(0) probably_damaging(1) TCGA-HU-A4G9-01 3 36872969 36872969 C T TRANK1 Missense_Mutation p.R2658Q 0.65 tolerated(0.17) benign(0.028) TCGA-HU-A4G9-01 3 36876253 36876253 T - TRANK1 Frame_Shift_Del p.K1844Sfs*6 0.20 TCGA-HU-A4G9-01 3 37114286 37114286 T - LRRFIP2 Frame_Shift_Del p.I487Lfs*4 0.23 TCGA-HU-A4G9-01 3 37860485 37860485 C T ITGA9 3'UTR 0.29 TCGA-HU-A4G9-01 3 42735292 42735292 A G HHATL Silent p.I355I 0.41 TCGA-HU-A4G9-01 3 44795778 44795778 T - KIAA1143 Frame_Shift_Del p.K64Rfs*10 0.26 TCGA-HU-A4G9-01 3 46943283 46943283 G A PTH1R Missense_Mutation p.V382I 0.51 tolerated(0.34) benign(0.03) TCGA-HU-A4G9-01 3 48612871 48612871 G - COL7A1 Frame_Shift_Del p.P2029Lfs*177 0.17 TCGA-HU-A4G9-01 3 49004695 49004695 C T ARIH2 Silent p.D175D 0.28 TCGA-HU-A4G9-01 3 49308540 49308540 C T C3orf62 3'UTR 0.21 TCGA-HU-A4G9-01 3 49548245 49548245 T G DAG1 Missense_Mutation p.I93S 0.46 tolerated(0.41) benign(0.002) TCGA-HU-A4G9-01 3 49836474 49836474 T C CDHR4 Missense_Mutation p.Q119R 0.36 tolerated(0.37) benign(0.02) TCGA-HU-A4G9-01 3 49929015 49929015 T C MST1R Splice_Site p.X1118_splice 0.22 TCGA-HU-A4G9-01 3 50655080 50655080 G - MAPKAPK3 Frame_Shift_Del p.R31Gfs*9 0.26 TCGA-HU-A4G9-01 3 52854794 52854794 C T ITIH4 Missense_Mutation p.A563T 0.23 deleterious(0.03) possibly_damaging(0.465) TCGA-HU-A4G9-01 3 57132299 57132299 C T IL17RD Missense_Mutation p.V478I 0.26 deleterious(0.03) probably_damaging(0.998) TCGA-HU-A4G9-01 3 58351616 58351616 G A PXK Missense_Mutation p.V40M 0.25 deleterious(0) probably_damaging(0.95) TCGA-HU-A4G9-01 3 58376325 58376325 G A PXK Silent p.Q135Q 0.19 TCGA-HU-A4G9-01 3 64580100 64580100 A G ADAMTS9 Missense_Mutation p.L1397P 0.05 tolerated(0.31) benign(0.002) TCGA-HU-A4G9-01 3 66433766 66433766 C T LRIG1 Missense_Mutation p.A711T 0.24 deleterious(0.01) benign(0.069) TCGA-HU-A4G9-01 3 77617584 77617584 C T ROBO2 Missense_Mutation p.T673M 0.17 tolerated(0.07) probably_damaging(0.924) TCGA-HU-A4G9-01 3 95374407 95374407 T C MTHFD2P1 RNA 0.18 TCGA-HU-A4G9-01 3 97596423 97596423 T C CRYBG3 Missense_Mutation p.S181P 0.26 deleterious(0) probably_damaging(0.999) TCGA-HU-A4G9-01 3 9767682 9767682 A G CPNE9 Missense_Mutation p.I431V 0.20 tolerated(0.09) benign(0.039) TCGA-HU-A4G9-01 3 9786078 9786078 C - BRPF1 Frame_Shift_Del p.Q938Sfs*5 0.29 TCGA-HU-A4G9-01 4 100543904 100543904 G A MTTP Missense_Mutation p.V862I 0.33 tolerated(0.16) benign(0.007) TCGA-HU-A4G9-01 4 1018193 1018193 C T FGFRL1 Silent p.R271R 0.33 TCGA-HU-A4G9-01 4 103635670 103635670 C T MANBA Missense_Mutation p.G200R 0.16 deleterious(0) probably_damaging(0.997) TCGA-HU-A4G9-01 4 10445986 10445986 G A ZNF518B Missense_Mutation p.T656M 0.16 deleterious(0) probably_damaging(0.998) TCGA-HU-A4G9-01 4 108999528 108999528 G A LEF1 Missense_Mutation p.H286Y 0.44 tolerated(0.06) probably_damaging(0.995) TCGA-HU-A4G9-01 4 114274959 114274959 A - ANK2 Frame_Shift_Del p.G1731Vfs*7 0.31 TCGA-HU-A4G9-01 4 121843685 121843685 G A PRDM5 Missense_Mutation p.R27C 0.40 deleterious(0) probably_damaging(0.996) TCGA-HU-A4G9-01 4 123664721 123664722 - A BBS12 Frame_Shift_Ins p.E561Rfs*11 0.29 TCGA-HU-A4G9-01 4 125592251 125592251 G A ANKRD50 Silent p.H727H 0.29 TCGA-HU-A4G9-01 4 129773352 129773352 T C JADE1 Missense_Mutation p.C209R 0.37 deleterious(0) probably_damaging(1) TCGA-HU-A4G9-01 4 13601959 13601959 C T BOD1L1 Missense_Mutation p.D2189N 0.36 benign(0.181) TCGA-HU-A4G9-01 4 141590817 141590817 G A TBC1D9 Missense_Mutation p.R470W 0.28 deleterious(0.01) possibly_damaging(0.898) TCGA-HU-A4G9-01 4 144106875 144106875 A G USP38 Missense_Mutation p.Q91R 0.35 tolerated(0.29) benign(0.002) TCGA-HU-A4G9-01 4 151505070 151505070 G T MAB21L2 Missense_Mutation p.G297C 0.13 deleterious(0) possibly_damaging(0.861) TCGA-HU-A4G9-01 4 155254527 155254527 C T DCHS2 Missense_Mutation p.V446M 0.37 tolerated(0.2) benign(0.298) TCGA-HU-A4G9-01 4 169227858 169227858 G A DDX60 Missense_Mutation p.A93V 0.39 tolerated(0.67) benign(0.052) TCGA-HU-A4G9-01 4 1804680 1804680 C T FGFR3 Missense_Mutation p.R324C 0.44 tolerated(0.09) possibly_damaging(0.498) TCGA-HU-A4G9-01 4 183714567 183714567 T - TENM3 Frame_Shift_Del p.Y2250Mfs*4 0.29 TCGA-HU-A4G9-01 4 186231786 186231786 A G SNX25 Intron 0.43 TCGA-HU-A4G9-01 4 186379943 186379943 T - CCDC110 Frame_Shift_Del p.S600Afs*7 0.26 TCGA-HU-A4G9-01 4 20597371 20597371 C T SLIT2 Silent p.D1078D 0.38 TCGA-HU-A4G9-01 4 2661593 2661593 C - FAM193A Frame_Shift_Del p.V231Sfs*81 0.34 TCGA-HU-A4G9-01 4 2698298 2698298 G A FAM193A Missense_Mutation p.R871Q 0.37 deleterious(0) benign(0.226) TCGA-HU-A4G9-01 4 30723127 30723127 C T PCDH7 Missense_Mutation p.A28V 0.42 tolerated(0.12) possibly_damaging(0.715) TCGA-HU-A4G9-01 4 3189409 3189409 C T HTT Missense_Mutation p.S1674L 0.49 possibly_damaging(0.626) TCGA-HU-A4G9-01 4 3445854 3445854 C - HGFAC Frame_Shift_Del p.R190Gfs*57 0.24 TCGA-HU-A4G9-01 4 3449696 3449696 G A HGFAC Missense_Mutation p.E524K 0.16 deleterious(0.01) possibly_damaging(0.737) TCGA-HU-A4G9-01 4 38830974 38830974 T - TLR6 Frame_Shift_Del p.R41Efs*12 0.21 TCGA-HU-A4G9-01 4 40144449 40144449 A - N4BP2 Frame_Shift_Del p.N1650Mfs*17 0.43 TCGA-HU-A4G9-01 4 44449851 44449851 C T KCTD8 Silent p.R230R 0.65 TCGA-HU-A4G9-01 4 47525167 47525167 G A ATP10D Silent p.E208E 0.52 TCGA-HU-A4G9-01 4 47954605 47954605 T C CNGA1 Silent p.A107A 0.40 TCGA-HU-A4G9-01 4 55524194 55524194 C T KIT Missense_Mutation p.R5C 0.40 tolerated_low_confidence(0.06) benign(0.004) TCGA-HU-A4G9-01 4 57179503 57179503 A - KIAA1211 Frame_Shift_Del p.K167Nfs*82 0.35 TCGA-HU-A4G9-01 4 57267591 57267591 T C PPAT Missense_Mutation p.Q264R 0.47 tolerated(1) benign(0) TCGA-HU-A4G9-01 4 57368108 57368108 C T SRP72 3'UTR 0.44 TCGA-HU-A4G9-01 4 77003516 77003516 C T ART3 Silent p.I203I 0.43 TCGA-HU-A4G9-01 4 77662485 77662485 C T SHROOM3 Silent p.S1053S 0.41 TCGA-HU-A4G9-01 4 79188036 79188036 C T FRAS1 Missense_Mutation p.R246W 0.40 benign(0.035) TCGA-HU-A4G9-01 4 88035872 88035872 G - AFF1 Frame_Shift_Del p.E631Kfs*22 0.12 TCGA-HU-A4G9-01 4 90872776 90872776 C T MMRN1 Missense_Mutation p.R1047W 0.33 deleterious(0.01) possibly_damaging(0.873) TCGA-HU-A4G9-01 4 96025646 96025646 C - BMPR1B Frame_Shift_Del p.R56Vfs*31 0.35 TCGA-HU-A4G9-01 5 101606375 101606375 G A SLCO4C1 Missense_Mutation p.A252V 0.36 deleterious(0.03) probably_damaging(0.934) TCGA-HU-A4G9-01 5 1057726 1057726 G A SLC12A7 Silent p.T962T 0.37 TCGA-HU-A4G9-01 5 112214385 112214385 G T REEP5 3'UTR 0.53 TCGA-HU-A4G9-01 5 112487025 112487025 T - MCC Frame_Shift_Del p.K241Rfs*14 0.27 TCGA-HU-A4G9-01 5 118829515 118829515 C T HSD17B4 Missense_Mutation p.R273C 0.42 deleterious(0) probably_damaging(0.99) TCGA-HU-A4G9-01 5 126154700 126154701 AG - LMNB1 Frame_Shift_Del p.E345Dfs*14 0.38 TCGA-HU-A4G9-01 5 128797351 128797351 G A ADAMTS19 Silent p.P210P 0.47 TCGA-HU-A4G9-01 5 129241306 129241306 G A CHSY3 Missense_Mutation p.D262N 0.43 deleterious(0) probably_damaging(1) TCGA-HU-A4G9-01 5 131993886 131993886 C T IL13 Missense_Mutation p.P3L 0.36 deleterious_low_confidence(0.02) unknown(0) TCGA-HU-A4G9-01 5 132159003 132159003 C T SHROOM1 Missense_Mutation p.R722H 0.09 deleterious(0) probably_damaging(0.999) TCGA-HU-A4G9-01 5 133541547 133541547 G A PPP2CA Intron 0.60 TCGA-HU-A4G9-01 5 137519413 137519413 G - KIF20A Frame_Shift_Del p.E394Kfs*4 0.31 TCGA-HU-A4G9-01 5 140215251 140215251 G A PCDHA7 Missense_Mutation p.R428Q 0.36 tolerated_low_confidence(0.14) benign(0.042) TCGA-HU-A4G9-01 5 141242842 141242842 G A PCDH1 Silent p.S1018S 0.31 TCGA-HU-A4G9-01 5 14387627 14387627 A - TRIO Frame_Shift_Del p.K1219Nfs*43 0.32 TCGA-HU-A4G9-01 5 145647320 145647320 A - RBM27 Frame_Shift_Del p.K816Nfs*5 0.51 TCGA-HU-A4G9-01 5 145719765 145719765 T C POU4F3 Missense_Mutation p.Y259H 0.42 tolerated(0.61) benign(0.006) TCGA-HU-A4G9-01 5 14711291 14711291 A G ANKH 3'UTR 0.40 TCGA-HU-A4G9-01 5 149447865 149447865 G T CSF1R Missense_Mutation p.F513L 0.32 tolerated(0.67) benign(0.001) TCGA-HU-A4G9-01 5 149513265 149513265 C T PDGFRB Missense_Mutation p.R273H 0.34 tolerated(0.39) benign(0.051) TCGA-HU-A4G9-01 5 149576672 149576672 C T SLC6A7 Silent p.Y139Y 0.42 TCGA-HU-A4G9-01 5 149580755 149580755 C - SLC6A7 Frame_Shift_Del p.Q278Sfs*82 0.33 TCGA-HU-A4G9-01 5 150050052 150050052 C T MYOZ3 Missense_Mutation p.T23M 0.39 tolerated(0.13) benign(0.411) TCGA-HU-A4G9-01 5 156668718 156668718 G T ITK Missense_Mutation p.G350W 0.55 deleterious(0) probably_damaging(0.999) TCGA-HU-A4G9-01 5 156820069 156820069 A G CYFIP2 3'UTR 0.47 TCGA-HU-A4G9-01 5 169714973 169714973 C T LCP2 Splice_Site p.X63_splice 0.41 TCGA-HU-A4G9-01 5 170737354 170737354 G A TLX3 Missense_Mutation p.A208T 0.33 deleterious(0) possibly_damaging(0.659) TCGA-HU-A4G9-01 5 172590743 172590743 C T BNIP1 Missense_Mutation p.T212M 0.39 deleterious(0) possibly_damaging(0.742) TCGA-HU-A4G9-01 5 176025207 176025207 G A GPRIN1 Silent p.A543A 0.12 TCGA-HU-A4G9-01 5 176395772 176395772 A G UIMC1 Silent p.P328P 0.06 TCGA-HU-A4G9-01 5 176863243 176863243 C T GRK6 Silent p.S409S 0.46 TCGA-HU-A4G9-01 5 178152470 178152470 G A ZNF354A Missense_Mutation p.L55F 0.43 tolerated(0.29) benign(0.005) TCGA-HU-A4G9-01 5 178373922 178373922 C T ZNF454 Missense_Mutation p.T62M 0.09 tolerated(0.15) benign(0.001) TCGA-HU-A4G9-01 5 31799656 31799657 - G PDZD2 Frame_Shift_Ins p.K104Qfs*38 0.28 TCGA-HU-A4G9-01 5 52214676 52214676 A G ITGA1 Silent p.T701T 0.39 TCGA-HU-A4G9-01 5 68716104 68716104 G A MARVELD2 Missense_Mutation p.V298I 0.38 tolerated(0.32) benign(0.027) TCGA-HU-A4G9-01 5 70931091 70931091 T C MCCC2 Intron 0.43 TCGA-HU-A4G9-01 5 82816265 82816265 G A VCAN Missense_Mutation p.G714R 0.29 tolerated(0.05) benign(0.086) TCGA-HU-A4G9-01 5 92924138 92924138 C T NR2F1 Silent p.L327L 0.34 TCGA-HU-A4G9-01 6 100054917 100054917 G A PRDM13 Missense_Mutation p.G3R 0.27 deleterious_low_confidence(0) possibly_damaging(0.631) TCGA-HU-A4G9-01 6 100368796 100368796 A G MCHR2 3'UTR 0.49 TCGA-HU-A4G9-01 6 119288105 119288105 C T FAM184A Missense_Mutation p.M976I 0.36 deleterious(0.03) benign(0.094) TCGA-HU-A4G9-01 6 126080802 126080802 C - HEY2 Frame_Shift_Del p.P291Qfs*56 0.32 TCGA-HU-A4G9-01 6 131481276 131481276 A - AKAP7 Frame_Shift_Del p.K79Rfs*21 0.40 TCGA-HU-A4G9-01 6 132179844 132179844 T C ENPP1 Missense_Mutation p.V251A 0.25 tolerated(0.16) benign(0.181) TCGA-HU-A4G9-01 6 132966154 132966154 C A TAAR1 Missense_Mutation p.R330M 0.36 tolerated(0.1) benign(0.414) TCGA-HU-A4G9-01 6 139488396 139488396 G A HECA Missense_Mutation p.G416E 0.35 deleterious(0) benign(0.111) TCGA-HU-A4G9-01 6 146351103 146351103 C A GRM1 Silent p.G150G 0.36 TCGA-HU-A4G9-01 6 150023031 150023031 A G LATS1 Silent p.L78L 0.42 TCGA-HU-A4G9-01 6 152949540 152949540 A - SYNE1 5'UTR 0.31 TCGA-HU-A4G9-01 6 155451082 155451082 C T TIAM2 Missense_Mutation p.S242F 0.39 deleterious(0) probably_damaging(0.999) TCGA-HU-A4G9-01 6 163899919 163899920 - A QKI Frame_Shift_Ins p.E135Gfs*5 0.37 TCGA-HU-A4G9-01 6 27861423 27861423 C T HIST1H2BO Silent p.G61G 0.44 TCGA-HU-A4G9-01 6 29577144 29577144 G - GABBR1 Frame_Shift_Del p.P574Qfs*32 0.24 TCGA-HU-A4G9-01 6 3140675 3140675 C T BPHL Silent p.H240H 0.32 TCGA-HU-A4G9-01 6 31864763 31864763 C - EHMT2 Frame_Shift_Del p.E16Rfs*68 0.30 TCGA-HU-A4G9-01 6 32160020 32160020 G - GPSM3 Frame_Shift_Del p.P17Lfs*77 0.29 TCGA-HU-A4G9-01 6 32947706 32947706 G A BRD2 Missense_Mutation p.R683Q 0.40 deleterious(0) benign(0.238) TCGA-HU-A4G9-01 6 36652259 36652259 T C CDKN1A Silent p.A127A 0.41 TCGA-HU-A4G9-01 6 41553174 41553174 G A FOXP4 Silent p.Q143Q 0.37 TCGA-HU-A4G9-01 6 42832627 42832627 A - GLTSCR1L Frame_Shift_Del p.T897Qfs*8 0.24 TCGA-HU-A4G9-01 6 42974387 42974387 C T PPP2R5D Missense_Mutation p.R98W 0.51 deleterious(0.04) probably_damaging(0.932) TCGA-HU-A4G9-01 6 42985381 42985381 C T KLHDC3 Silent p.G93G 0.25 TCGA-HU-A4G9-01 6 43252016 43252016 G A TTBK1 Missense_Mutation p.A1180T 0.46 benign(0.002) TCGA-HU-A4G9-01 6 45922903 45922903 C T CLIC5 Missense_Mutation p.V207M 0.38 deleterious(0.01) probably_damaging(0.944) TCGA-HU-A4G9-01 6 46806746 46806746 C T MEP1A Missense_Mutation p.T705M 0.34 tolerated(0.67) possibly_damaging(0.634) TCGA-HU-A4G9-01 6 49426894 49426894 A G MUT Missense_Mutation p.Y96H 0.48 deleterious_low_confidence(0.03) benign(0.276) TCGA-HU-A4G9-01 6 4996269 4996269 C T RPP40 Missense_Mutation p.S270N 0.07 tolerated(0.58) benign(0.075) TCGA-HU-A4G9-01 6 52144285 52144285 C T MCM3 Missense_Mutation p.R260H 0.04 deleterious(0) probably_damaging(1) TCGA-HU-A4G9-01 6 7230385 7230385 G A RREB1 Missense_Mutation p.A685T 0.47 tolerated(0.79) possibly_damaging(0.758) TCGA-HU-A4G9-01 6 7365800 7365800 G T CAGE1 Missense_Mutation p.D698E 0.50 tolerated(0.11) benign(0.099) TCGA-HU-A4G9-01 6 73843172 73843172 C T KCNQ5 Missense_Mutation p.R445C 0.35 deleterious(0.02) benign(0.429) TCGA-HU-A4G9-01 6 90573828 90573828 G A CASP8AP2 RNA 0.08 TCGA-HU-A4G9-01 6 96034484 96034484 A G MANEA Missense_Mutation p.K57E 0.33 tolerated(0.34) benign(0.157) TCGA-HU-A4G9-01 6 96034832 96034832 A G MANEA Missense_Mutation p.M173V 0.54 deleterious(0.02) probably_damaging(0.99) TCGA-HU-A4G9-01 6 96053724 96053724 T C MANEA Missense_Mutation p.W278R 0.07 deleterious(0) probably_damaging(1) TCGA-HU-A4G9-01 6 96986656 96986656 C T UFL1 Silent p.F376F 0.28 TCGA-HU-A4G9-01 6 99848925 99848925 G A PNISR Nonsense_Mutation p.R637* 0.35 TCGA-HU-A4G9-01 6 99857094 99857094 G A PNISR Missense_Mutation p.R210C 0.26 deleterious(0) probably_damaging(0.998) TCGA-HU-A4G9-01 7 100034028 100034028 C T PPP1R35 5'UTR 0.24 TCGA-HU-A4G9-01 7 100357453 100357453 G A ZAN Silent p.K1227K 0.22 TCGA-HU-A4G9-01 7 100676652 100676654 CTC - MUC17 In_Frame_Del p.P653del 0.34 TCGA-HU-A4G9-01 7 101845115 101845115 G A CUX1 Silent p.T857T 0.54 TCGA-HU-A4G9-01 7 103368593 103368593 C T RELN Missense_Mutation p.V240I 0.36 tolerated(0.09) benign(0.001) TCGA-HU-A4G9-01 7 105635244 105635244 C T CDHR3 Silent p.G187G 0.28 TCGA-HU-A4G9-01 7 107615542 107615542 A G LAMB1 Silent p.S457S 0.46 TCGA-HU-A4G9-01 7 111368616 111368616 T C DOCK4 Missense_Mutation p.Q1872R 0.39 tolerated_low_confidence(0.31) benign(0.008) TCGA-HU-A4G9-01 7 121651137 121651137 T C PTPRZ1 Silent p.T679T 0.40 TCGA-HU-A4G9-01 7 121773834 121773834 G A AASS 5'UTR 0.40 TCGA-HU-A4G9-01 7 129096402 129096402 G A STRIP2 Silent p.P319P 0.36 TCGA-HU-A4G9-01 7 129950720 129950720 A - CPA4 Frame_Shift_Del p.K297Nfs*18 0.27 TCGA-HU-A4G9-01 7 134851386 134851386 C T C7orf49 Missense_Mutation p.V151I 0.41 deleterious(0) probably_damaging(0.992) TCGA-HU-A4G9-01 7 135322803 135322803 A G NUP205 Missense_Mutation p.Q1754R 0.29 tolerated(0.43) possibly_damaging(0.493) TCGA-HU-A4G9-01 7 140476719 140476719 C A BRAF Missense_Mutation p.G563C 0.33 deleterious(0) probably_damaging(1) TCGA-HU-A4G9-01 7 142571332 142571332 A C TRPV6 Missense_Mutation p.F553V 0.46 tolerated(0.35) benign(0.247) TCGA-HU-A4G9-01 7 143884068 143884068 A - ARHGEF35 Frame_Shift_Del p.L470* 0.25 TCGA-HU-A4G9-01 7 149499038 149499038 G T SSPO RNA 0.41 TCGA-HU-A4G9-01 7 149502564 149502564 G - SSPO RNA 0.14 TCGA-HU-A4G9-01 7 149557637 149557637 G A ZNF862 Missense_Mutation p.R463H 0.14 deleterious(0.02) probably_damaging(0.994) TCGA-HU-A4G9-01 7 149575867 149575867 G C ATP6V0E2 Intron 0.47 TCGA-HU-A4G9-01 7 150749150 150749150 G C ASIC3 Splice_Site p.X462_splice 0.41 TCGA-HU-A4G9-01 7 151845524 151845524 A - KMT2C Frame_Shift_Del p.F4496Lfs*21 0.30 TCGA-HU-A4G9-01 7 155493520 155493520 A T RBM33 Missense_Mutation p.E207D 0.55 tolerated(0.15) benign(0.395) TCGA-HU-A4G9-01 7 22197474 22197474 T - RAPGEF5 Frame_Shift_Del p.K366Rfs*22 0.36 TCGA-HU-A4G9-01 7 2645582 2645582 G A IQCE Missense_Mutation p.V606I 0.44 tolerated(0.21) benign(0.014) TCGA-HU-A4G9-01 7 35678044 35678044 G T HERPUD2 Missense_Mutation p.P178H 0.24 deleterious(0.01) possibly_damaging(0.642) TCGA-HU-A4G9-01 7 44120414 44120414 G - POLM Frame_Shift_Del p.P97Qfs*6 0.31 TCGA-HU-A4G9-01 7 44144463 44144463 C T AEBP1 Nonsense_Mutation p.R67* 0.62 TCGA-HU-A4G9-01 7 44157558 44157558 C T POLD2 Missense_Mutation p.R109Q 0.43 tolerated(0.33) benign(0.006) TCGA-HU-A4G9-01 7 48563978 48563978 G A ABCA13 Missense_Mutation p.R4729H 0.29 benign(0.004) TCGA-HU-A4G9-01 7 4947221 4947221 C T MMD2 Missense_Mutation p.E207K 0.31 tolerated(0.27) benign(0.074) TCGA-HU-A4G9-01 7 50459497 50459497 C T IKZF1 Silent p.L220L 0.44 TCGA-HU-A4G9-01 7 50514212 50514212 C T FIGNL1 Silent p.K258K 0.39 TCGA-HU-A4G9-01 7 5347890 5347890 C T TNRC18 Silent p.S2918S 0.35 TCGA-HU-A4G9-01 7 5348943 5348943 G A TNRC18 Silent p.G2815G 0.36 TCGA-HU-A4G9-01 7 6026915 6026915 G A PMS2 Missense_Mutation p.S494L 0.45 tolerated(0.14) benign(0.024) TCGA-HU-A4G9-01 7 73466255 73466255 C T ELN Silent p.G297G 0.04 TCGA-HU-A4G9-01 7 73771801 73771801 T C CLIP2 Silent p.H403H 0.30 TCGA-HU-A4G9-01 7 75511206 75511206 G A RHBDD2 Missense_Mutation p.A80T 0.42 tolerated(0.14) benign(0.169) TCGA-HU-A4G9-01 7 82578874 82578874 C T PCLO Missense_Mutation p.R3677H 0.31 unknown(0) TCGA-HU-A4G9-01 7 87214926 87214926 G T ABCB1 Missense_Mutation p.A63D 0.28 deleterious(0) possibly_damaging(0.691) TCGA-HU-A4G9-01 7 91645529 91645529 C T AKAP9 Silent p.Y1233Y 0.59 TCGA-HU-A4G9-01 7 92147285 92147285 G A PEX1 Missense_Mutation p.R182C 0.27 deleterious(0) probably_damaging(0.972) TCGA-HU-A4G9-01 7 94285328 94285328 G A SGCE Missense_Mutation p.A28V 0.10 tolerated(0.16) benign(0.013) TCGA-HU-A4G9-01 7 94540617 94540617 C T PPP1R9A Missense_Mutation p.H398Y 0.09 tolerated(0.12) possibly_damaging(0.84) TCGA-HU-A4G9-01 7 98556979 98556979 A G TRRAP Missense_Mutation p.T2112A 0.37 benign(0.003) TCGA-HU-A4G9-01 7 98609104 98609104 G A TRRAP Silent p.P3747P 0.40 TCGA-HU-A4G9-01 7 99051685 99051685 G A CPSF4 Missense_Mutation p.G223R 0.41 tolerated(0.24) benign(0.004) TCGA-HU-A4G9-01 7 99706154 99706155 CA - TAF6 Frame_Shift_Del p.A469Sfs*11 0.30 TCGA-HU-A4G9-01 8 101960825 101960825 A G YWHAZ Missense_Mutation p.L98P 0.20 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-HU-A4G9-01 8 103289349 103289349 T - UBR5 Frame_Shift_Del p.E2121Kfs*28 0.44 TCGA-HU-A4G9-01 8 104342230 104342230 G T FZD6 Missense_Mutation p.G630V 0.23 tolerated_low_confidence(0.3) benign(0) TCGA-HU-A4G9-01 8 105405032 105405032 G A DPYS Nonsense_Mutation p.R475* 0.42 TCGA-HU-A4G9-01 8 10583237 10583237 C T SOX7 3'UTR 0.28 TCGA-HU-A4G9-01 8 10683722 10683722 T C SOX7 Missense_Mutation p.S112G 0.38 tolerated(0.09) probably_damaging(0.949) TCGA-HU-A4G9-01 8 110477051 110477051 A G PKHD1L1 Missense_Mutation p.N2664D 0.21 tolerated(0.1) benign(0.046) TCGA-HU-A4G9-01 8 113277738 113277738 T A CSMD3 Missense_Mutation p.Y3197F 0.24 tolerated(0.66) benign(0.023) TCGA-HU-A4G9-01 8 113301691 113301691 A G CSMD3 Silent p.V3017V 0.27 TCGA-HU-A4G9-01 8 113694730 113694730 A T CSMD3 Missense_Mutation p.I873N 0.13 deleterious(0) probably_damaging(1) TCGA-HU-A4G9-01 8 117950510 117950511 AG - AARD Frame_Shift_Del p.R12Nfs*11 0.19 TCGA-HU-A4G9-01 8 125500846 125500847 - A TATDN1 Frame_Shift_Ins p.P295Sfs*24 0.17 TCGA-HU-A4G9-01 8 12957761 12957761 G A DLC1 Silent p.S695S 0.21 TCGA-HU-A4G9-01 8 134034244 134034244 C T TG Silent p.N2295N 0.23 TCGA-HU-A4G9-01 8 139790595 139790595 C T COL22A1 Splice_Site p.X586_splice 0.25 TCGA-HU-A4G9-01 8 142222373 142222373 C T SLC45A4 Missense_Mutation p.G691R 0.18 tolerated_low_confidence(0.06) benign(0.009) TCGA-HU-A4G9-01 8 142228485 142228485 C T SLC45A4 Silent p.A367A 0.27 TCGA-HU-A4G9-01 8 143866633 143866633 A G LY6D 3'UTR 0.17 TCGA-HU-A4G9-01 8 144102851 144102851 G A LY6E Splice_Site p.X58_splice 0.18 TCGA-HU-A4G9-01 8 144464012 144464012 A G RHPN1 Silent p.S557S 0.21 TCGA-HU-A4G9-01 8 144620311 144620311 G - ZC3H3 Frame_Shift_Del p.P409Qfs*14 0.08 TCGA-HU-A4G9-01 8 144991489 144991489 G A PLEC Missense_Mutation p.T4304M 0.13 probably_damaging(1) TCGA-HU-A4G9-01 8 144995573 144995573 G A PLEC Silent p.L2943L 0.07 TCGA-HU-A4G9-01 8 144997128 144997128 C T PLEC Silent p.T2460T 0.20 TCGA-HU-A4G9-01 8 145094872 145094872 A C SPATC1 Missense_Mutation p.M92L 0.22 deleterious(0.03) benign(0.003) TCGA-HU-A4G9-01 8 145540341 145540341 A - DGAT1 Frame_Shift_Del p.F448Sfs*20 0.21 TCGA-HU-A4G9-01 8 145583901 145583901 T C SLC52A2 Missense_Mutation p.L250P 0.24 deleterious(0.03) probably_damaging(0.999) TCGA-HU-A4G9-01 8 145657756 145657756 C A TONSL Missense_Mutation p.G1216V 0.25 tolerated(0.18) benign(0.013) TCGA-HU-A4G9-01 8 145660453 145660453 C - TONSL Frame_Shift_Del p.A985Pfs*23 0.21 TCGA-HU-A4G9-01 8 145692659 145692659 G - KIFC2 Frame_Shift_Del p.R137Gfs*73 0.19 TCGA-HU-A4G9-01 8 145742065 145742065 C T RECQL4 Silent p.G146G 0.45 TCGA-HU-A4G9-01 8 145745092 145745092 T C LRRC14 5'UTR 0.19 TCGA-HU-A4G9-01 8 145748716 145748716 A G LRRC24 Missense_Mutation p.S229P 0.32 tolerated(0.2) benign(0.021) TCGA-HU-A4G9-01 8 146066746 146066746 C T ZNF7 Missense_Mutation p.T85M 0.22 tolerated(0.09) benign(0.016) TCGA-HU-A4G9-01 8 146278738 146278738 C A C8orf33 Silent p.P153P 0.27 TCGA-HU-A4G9-01 8 17402081 17402081 T - SLC7A2 Frame_Shift_Del p.F208Lfs*9 0.18 TCGA-HU-A4G9-01 8 17417858 17417858 C T SLC7A2 Silent p.Y480Y 0.20 TCGA-HU-A4G9-01 8 18257855 18257855 T C NAT2 Silent p.I114I 0.25 TCGA-HU-A4G9-01 8 21883281 21883281 A G NPM2 Missense_Mutation p.M90V 0.20 deleterious(0) probably_damaging(0.975) TCGA-HU-A4G9-01 8 22459825 22459825 G A C8orf58 Silent p.K293K 0.19 TCGA-HU-A4G9-01 8 22974326 22974326 G T TNFRSF10C Missense_Mutation p.G188W 0.19 deleterious_low_confidence(0) unknown(0) TCGA-HU-A4G9-01 8 23709860 23709860 G A STC1 Silent p.V52V 0.21 TCGA-HU-A4G9-01 8 24188782 24188783 - A ADAM28 Frame_Shift_Ins p.I409Nfs*14 0.17 TCGA-HU-A4G9-01 8 24350675 24350675 T - ADAM7 Frame_Shift_Del p.L594Yfs*29 0.23 TCGA-HU-A4G9-01 8 26513311 26513311 T G DPYSL2 3'UTR 0.42 TCGA-HU-A4G9-01 8 28360498 28360498 T C FZD3 5'UTR 0.24 TCGA-HU-A4G9-01 8 28574480 28574480 A G EXTL3 Missense_Mutation p.T302A 0.21 tolerated(0.33) benign(0.026) TCGA-HU-A4G9-01 8 28906577 28906577 C T HMBOX1 Intron 0.22 TCGA-HU-A4G9-01 8 3141799 3141799 G T CSMD1 Missense_Mutation p.D1340E 0.28 benign(0.019) TCGA-HU-A4G9-01 8 32621538 32621538 C T NRG1 Missense_Mutation p.A519V 0.23 deleterious(0) benign(0.237) TCGA-HU-A4G9-01 8 33346315 33346315 G A MAK16 Missense_Mutation p.R80Q 0.25 deleterious(0.01) possibly_damaging(0.794) TCGA-HU-A4G9-01 8 38034594 38034594 C T BAG4 Silent p.G69G 0.43 TCGA-HU-A4G9-01 8 38873652 38873652 C T ADAM9 Missense_Mutation p.R117W 0.20 deleterious(0) benign(0.022) TCGA-HU-A4G9-01 8 413102 413102 C T FBXO25 Silent p.Y313Y 0.17 TCGA-HU-A4G9-01 8 41794882 41794882 T G KAT6A Silent p.R1082R 0.23 TCGA-HU-A4G9-01 8 42012282 42012282 G A AP3M2 Missense_Mutation p.R26H 0.20 deleterious(0.01) benign(0.351) TCGA-HU-A4G9-01 8 55371735 55371735 G A SOX17 Missense_Mutation p.R142H 0.14 deleterious(0) probably_damaging(0.976) TCGA-HU-A4G9-01 8 55372288 55372288 C - SOX17 Frame_Shift_Del p.P328Rfs*59 0.28 TCGA-HU-A4G9-01 8 59510450 59510450 G T NSMAF Missense_Mutation p.L564M 0.21 deleterious(0.03) probably_damaging(0.964) TCGA-HU-A4G9-01 8 59764296 59764296 T C TOX Silent p.P160P 0.23 TCGA-HU-A4G9-01 8 62559385 62559387 TTG - ASPH In_Frame_Del p.Q181del 0.25 TCGA-HU-A4G9-01 8 70488321 70488321 G A SULF1 Missense_Mutation p.G97R 0.18 deleterious(0) probably_damaging(1) TCGA-HU-A4G9-01 8 70488373 70488373 C - SULF1 Frame_Shift_Del p.S116Rfs*47 0.16 TCGA-HU-A4G9-01 8 70585215 70585215 T - SLCO5A1 Frame_Shift_Del p.I814Sfs*16 0.18 TCGA-HU-A4G9-01 8 77766597 77766597 G A ZFHX4 Silent p.T2480T 0.26 TCGA-HU-A4G9-01 8 81553607 81553607 G A ZNF704 Silent p.L411L 0.23 TCGA-HU-A4G9-01 8 8233764 8233764 G A SGK223 Missense_Mutation p.R719W 0.22 probably_damaging(0.993) TCGA-HU-A4G9-01 8 82588516 82588516 T - IMPA1 Splice_Site p.X160_splice 0.19 TCGA-HU-A4G9-01 8 86354335 86354335 G A CA3 Missense_Mutation p.R89Q 0.05 deleterious(0.01) probably_damaging(0.93) TCGA-HU-A4G9-01 8 87060713 87060713 G A PSKH2 Missense_Mutation p.S379L 0.14 deleterious_low_confidence(0) benign(0.198) TCGA-HU-A4G9-01 8 87076599 87076599 G T PSKH2 Silent p.L149L 0.21 TCGA-HU-A4G9-01 8 94745759 94745759 A G RBM12B Silent p.N960N 0.22 TCGA-HU-A4G9-01 8 95686611 95686611 A - ESRP1 Frame_Shift_Del p.N512Tfs*2 0.23 TCGA-HU-A4G9-01 9 100070318 100070318 C T CCDC180 Silent p.P35P 0.33 TCGA-HU-A4G9-01 9 100092974 100092974 G T CCDC180 Missense_Mutation p.E777D 0.15 tolerated(0.41) benign(0) TCGA-HU-A4G9-01 9 100227190 100227190 T C TDRD7 Silent p.S503S 0.39 TCGA-HU-A4G9-01 9 101816906 101816906 A - COL15A1 Frame_Shift_Del p.G1002Afs*15 0.29 TCGA-HU-A4G9-01 9 108483839 108483839 G A TMEM38B Silent p.P97P 0.32 TCGA-HU-A4G9-01 9 109690562 109690562 C T ZNF462 Nonsense_Mutation p.Q1457* 0.44 TCGA-HU-A4G9-01 9 113547894 113547894 G A MUSK Silent p.P558P 0.36 TCGA-HU-A4G9-01 9 117504 117504 T C FOXD4 Missense_Mutation p.T206A 0.32 tolerated(0.14) benign(0.002) TCGA-HU-A4G9-01 9 120466714 120466714 C A TLR4 5'UTR 0.38 TCGA-HU-A4G9-01 9 127570085 127570085 C A OLFML2A Silent p.T398T 0.57 TCGA-HU-A4G9-01 9 128099537 128099537 T C GAPVD1 Silent p.A875A 0.38 TCGA-HU-A4G9-01 9 129458752 129458752 G A LMX1B 3'UTR 0.06 TCGA-HU-A4G9-01 9 133928328 133928328 G A LAMC3 Missense_Mutation p.V639I 0.46 tolerated(0.38) benign(0.021) TCGA-HU-A4G9-01 9 135750575 135750575 C G AK8 Missense_Mutation p.E32D 0.42 tolerated(0.08) benign(0.161) TCGA-HU-A4G9-01 9 136037753 136037753 G A GBGT1 Missense_Mutation p.A16V 0.33 tolerated_low_confidence(0.59) possibly_damaging(0.488) TCGA-HU-A4G9-01 9 136279675 136279675 A G REXO4 Intron 0.43 TCGA-HU-A4G9-01 9 138379043 138379043 G - PPP1R26 Frame_Shift_Del p.V898Sfs*56 0.36 TCGA-HU-A4G9-01 9 139272401 139272401 C T SNAPC4 Missense_Mutation p.R1293H 0.33 tolerated(0.55) benign(0) TCGA-HU-A4G9-01 9 139908775 139908775 C T ABCA2 Missense_Mutation p.R1362Q 0.29 tolerated(0.38) benign(0.027) TCGA-HU-A4G9-01 9 139943197 139943197 A G ENTPD2 Missense_Mutation p.L467P 0.54 deleterious(0.01) probably_damaging(0.997) TCGA-HU-A4G9-01 9 140086686 140086686 A G TPRN Intron 0.32 TCGA-HU-A4G9-01 9 19116373 19116373 G A PLIN2 Missense_Mutation p.T396M 0.48 deleterious(0.01) probably_damaging(0.998) TCGA-HU-A4G9-01 9 19324482 19324482 T - DENND4C Frame_Shift_Del p.F645Lfs*5 0.28 TCGA-HU-A4G9-01 9 21186891 21186891 A T IFNA4 3'UTR 0.26 TCGA-HU-A4G9-01 9 21480979 21480979 C T IFNE 3'UTR 0.31 TCGA-HU-A4G9-01 9 27228229 27228229 C T TEK Missense_Mutation p.R1076W 0.34 deleterious(0) probably_damaging(0.992) TCGA-HU-A4G9-01 9 33465880 33465880 G A NOL6 Missense_Mutation p.R794W 0.35 deleterious(0) probably_damaging(1) TCGA-HU-A4G9-01 9 33675379 33675379 C A PTENP1 RNA 0.27 TCGA-HU-A4G9-01 9 33675400 33675400 G A PTENP1 RNA 0.20 TCGA-HU-A4G9-01 9 34552676 34552676 A G CNTFR Silent p.A315A 0.17 TCGA-HU-A4G9-01 9 34623868 34623868 G A ARID3C Missense_Mutation p.R190C 0.38 deleterious(0) probably_damaging(1) TCGA-HU-A4G9-01 9 35043650 35043650 C - C9orf131 Frame_Shift_Del p.C344Afs*49 0.29 TCGA-HU-A4G9-01 9 35399003 35399003 C T UNC13B Missense_Mutation p.R1267W 0.56 deleterious(0) possibly_damaging(0.892) TCGA-HU-A4G9-01 9 35605979 35605979 A G TESK1 Splice_Site p.X74_splice 0.45 TCGA-HU-A4G9-01 9 35608960 35608960 C - TESK1 Frame_Shift_Del p.N370Tfs*6 0.28 TCGA-HU-A4G9-01 9 35809872 35809872 C T SPAG8 Intron 0.37 TCGA-HU-A4G9-01 9 36118778 36118778 G A RECK Missense_Mutation p.V760I 0.38 tolerated(0.07) benign(0.324) TCGA-HU-A4G9-01 9 37440993 37440993 C A ZBTB5 Missense_Mutation p.R519M 0.33 deleterious_low_confidence(0) possibly_damaging(0.781) TCGA-HU-A4G9-01 9 43626997 43626997 C T SPATA31A6 Missense_Mutation p.V564I 0.43 tolerated(0.2) benign(0.015) TCGA-HU-A4G9-01 9 4662738 4662738 G A PPAPDC2 Silent p.A121A 0.29 TCGA-HU-A4G9-01 9 5920290 5920290 T G KIAA2026 Missense_Mutation p.Q1902H 0.45 tolerated(0.06) probably_damaging(0.986) TCGA-HU-A4G9-01 9 90254270 90254270 C A DAPK1 Missense_Mutation p.P142H 0.31 deleterious(0) probably_damaging(1) TCGA-HU-A4G9-01 X 100808097 100808097 G A ARMCX1 Missense_Mutation p.A62T 0.21 tolerated_low_confidence(0.19) benign(0.001) TCGA-HU-A4G9-01 X 101138440 101138440 T A ZMAT1 3'UTR 0.27 TCGA-HU-A4G9-01 X 101913046 101913046 G A GPRASP1 3'UTR 0.31 TCGA-HU-A4G9-01 X 102564886 102564886 G A BEX2 Nonsense_Mutation p.R39* 0.48 TCGA-HU-A4G9-01 X 106016247 106016247 A - RNF128 Frame_Shift_Del p.K198Nfs*6 0.32 TCGA-HU-A4G9-01 X 107406166 107406166 C T COL4A6 Missense_Mutation p.G1392D 0.38 probably_damaging(1) TCGA-HU-A4G9-01 X 109937511 109937511 C T CHRDL1 Missense_Mutation p.A220T 0.35 tolerated(0.65) benign(0.002) TCGA-HU-A4G9-01 X 112021756 112021756 G T AMOT 3'UTR 0.33 TCGA-HU-A4G9-01 X 112033859 112033859 T G AMOT Missense_Mutation p.H693P 0.46 unknown(0) TCGA-HU-A4G9-01 X 117764371 117764371 A G DOCK11 Silent p.V1268V 0.42 TCGA-HU-A4G9-01 X 118977168 118977168 T - UPF3B Frame_Shift_Del p.N189Ifs*4 0.28 TCGA-HU-A4G9-01 X 129505599 129505599 T C SLC25A14 Missense_Mutation p.L306P 0.41 deleterious(0) probably_damaging(0.992) TCGA-HU-A4G9-01 X 134995056 134995056 A G SAGE1 Silent p.%3D 0.25 TCGA-HU-A4G9-01 X 135047054 135047055 - T MMGT1 3'UTR 0.36 TCGA-HU-A4G9-01 X 1409308 1409308 A G CSF2RA Silent p.S184S 0.39 TCGA-HU-A4G9-01 X 149102068 149102068 G A CXorf40B Missense_Mutation p.R9W 0.33 tolerated(0.08) benign(0.103) TCGA-HU-A4G9-01 X 150573447 150573447 G A VMA21 Missense_Mutation p.A75T 0.41 tolerated(0.25) possibly_damaging(0.534) TCGA-HU-A4G9-01 X 153219914 153219914 G A HCFC1 Silent p.S1312S 0.42 TCGA-HU-A4G9-01 X 153594462 153594462 G A FLNA Silent p.V453V 0.44 TCGA-HU-A4G9-01 X 153689684 153689684 C T PLXNA3 Silent p.I280I 0.37 TCGA-HU-A4G9-01 X 155255058 155255058 C - WASH6P RNA 0.17 TCGA-HU-A4G9-01 X 22095682 22095682 C T PHEX Silent p.G175G 0.40 TCGA-HU-A4G9-01 X 22129611 22129611 G T PHEX Missense_Mutation p.R369I 0.42 deleterious(0) probably_damaging(0.999) TCGA-HU-A4G9-01 X 23411237 23411237 C T PTCHD1 Silent p.T534T 0.38 TCGA-HU-A4G9-01 X 2406990 2406990 A G ZBED1 Missense_Mutation p.W591R 0.39 deleterious(0) probably_damaging(1) TCGA-HU-A4G9-01 X 2408297 2408297 G A ZBED1 Missense_Mutation p.T155M 0.42 deleterious(0.05) possibly_damaging(0.661) TCGA-HU-A4G9-01 X 26212996 26212996 C T MAGEB6 Missense_Mutation p.R345W 0.36 tolerated(0.06) benign(0.001) TCGA-HU-A4G9-01 X 33229458 33229458 A - DMD 5'UTR 0.47 TCGA-HU-A4G9-01 X 40542144 40542144 A G MED14 Missense_Mutation p.V721A 0.34 deleterious(0.03) possibly_damaging(0.704) TCGA-HU-A4G9-01 X 41333037 41333037 C T NYX Missense_Mutation p.R111C 0.46 deleterious(0.04) possibly_damaging(0.634) TCGA-HU-A4G9-01 X 44035573 44035573 A C EFHC2 Silent p.P669P 0.56 TCGA-HU-A4G9-01 X 45051247 45051247 G A CXorf36 Silent p.L83L 0.18 TCGA-HU-A4G9-01 X 48673431 48673431 A G HDAC6 Silent p.A374A 0.46 TCGA-HU-A4G9-01 X 48826286 48826286 G A KCND1 Silent p.C131C 0.48 TCGA-HU-A4G9-01 X 49107881 49107881 C T FOXP3 Missense_Mutation p.A404T 0.31 deleterious(0) possibly_damaging(0.7) TCGA-HU-A4G9-01 X 53410093 53410093 G A SMC1A Missense_Mutation p.R1019C 0.62 deleterious(0) possibly_damaging(0.745) TCGA-HU-A4G9-01 X 54776525 54776525 C T ITIH6 Missense_Mutation p.A1249T 0.39 tolerated(0.73) benign(0.003) TCGA-HU-A4G9-01 X 56591874 56591874 C - UBQLN2 Frame_Shift_Del p.P525Lfs*71 0.37 TCGA-HU-A4G9-01 X 57936383 57936383 C T ZXDA Missense_Mutation p.A158T 0.32 tolerated(0.16) benign(0.013) TCGA-HU-A4G9-01 X 67940212 67940212 C T STARD8 Missense_Mutation p.P666S 0.48 deleterious(0) probably_damaging(0.999) TCGA-HU-A4G9-01 X 69420151 69420151 C T DGAT2L6 Missense_Mutation p.A105V 0.38 tolerated(0.35) benign(0.032) TCGA-HU-A4G9-01 X 70330449 70330449 T - IL2RG Frame_Shift_Del p.K120Rfs*27 0.35 TCGA-HU-A4G9-01 X 74295434 74295434 A - ABCB7 Frame_Shift_Del p.F207Lfs*12 0.38 TCGA-HU-A4G9-01 X 89177504 89177504 G A TGIF2LX Silent p.A140A 0.09 TCGA-HU-A4G9-01 X 99662505 99662505 G - PCDH19 Frame_Shift_Del p.P364Rfs*4 0.33 TCGA-HU-A4G9-01 X 99936233 99936233 G A SYTL4 Missense_Mutation p.R517W 0.29 deleterious(0.01) benign(0.004) TCGA-HU-A4GC-01 10 105158256 105158256 C T PDCD11 Nonsense_Mutation p.Q25* 0.13 TCGA-HU-A4GC-01 10 115526470 115526470 A G PLEKHS1 Missense_Mutation p.I67V 0.16 tolerated(0.57) benign(0.332) TCGA-HU-A4GC-01 10 23295908 23295908 C T ARMC3 Silent p.Y609Y 0.14 TCGA-HU-A4GC-01 10 27702414 27702414 C T PTCHD3 Missense_Mutation p.A256T 0.15 deleterious(0.02) possibly_damaging(0.63) TCGA-HU-A4GC-01 10 50724334 50724334 T C ERCC6-PGBD3 Missense_Mutation p.Y744C 0.15 tolerated_low_confidence(0.17) unknown(0) TCGA-HU-A4GC-01 10 56077046 56077046 A T PCDH15 Silent p.P287P 0.16 TCGA-HU-A4GC-01 10 71913593 71913593 C T SAR1A Splice_Site p.X160_splice 0.17 TCGA-HU-A4GC-01 10 88702628 88702628 C T MMRN2 Missense_Mutation p.R638H 0.21 deleterious(0.03) possibly_damaging(0.871) TCGA-HU-A4GC-01 11 1016296 1016305 GGGCGGACAC - MUC6 Frame_Shift_Del p.V2166Pfs*7 0.21 TCGA-HU-A4GC-01 11 110451527 110451527 G T ARHGAP20 Missense_Mutation p.L715I 0.13 tolerated(0.05) benign(0.063) TCGA-HU-A4GC-01 11 1272159 1272159 G A MUC5B Silent p.T4683T 0.14 TCGA-HU-A4GC-01 11 4790778 4790778 G A OR51F1 Missense_Mutation p.R124C 0.39 deleterious(0.02) benign(0.052) TCGA-HU-A4GC-01 11 49831413 49831413 A C RP11-707M1.1 RNA 0.12 TCGA-HU-A4GC-01 11 60170398 60170398 C T MS4A14 Missense_Mutation p.T111M 0.14 tolerated(0.39) benign(0.047) TCGA-HU-A4GC-01 11 60558491 60558491 C A MS4A10 Silent p.G76G 0.15 TCGA-HU-A4GC-01 11 60609973 60609973 A C CCDC86 Missense_Mutation p.K126Q 0.14 tolerated(0.13) benign(0.065) TCGA-HU-A4GC-01 11 61094279 61094279 G A DDB1 Silent p.V212V 0.14 TCGA-HU-A4GC-01 11 61508640 61508640 G A DAGLA Missense_Mutation p.E664K 0.31 tolerated(0.07) benign(0.067) TCGA-HU-A4GC-01 11 65650595 65650595 G T CTSW Missense_Mutation p.K267N 0.13 tolerated(0.22) possibly_damaging(0.821) TCGA-HU-A4GC-01 11 67287394 67287394 G A CABP2 Silent p.D169D 0.26 TCGA-HU-A4GC-01 11 72289976 72289976 G T PDE2A Missense_Mutation p.Q812K 0.43 deleterious(0.01) probably_damaging(0.964) TCGA-HU-A4GC-01 11 72398783 72398783 G A ARAP1 Silent p.C1357C 0.34 TCGA-HU-A4GC-01 12 122404867 122404867 G A WDR66 Silent p.T833T 0.20 TCGA-HU-A4GC-01 12 2675732 2675732 G T CACNA1C Missense_Mutation p.W551C 0.21 deleterious(0) probably_damaging(0.973) TCGA-HU-A4GC-01 12 45173632 45173632 T C NELL2 Missense_Mutation p.K220R 0.14 tolerated(1) benign(0.058) TCGA-HU-A4GC-01 12 53621231 53621231 G A RARG Silent p.L33L 0.38 TCGA-HU-A4GC-01 12 6690868 6690868 G A CHD4 Missense_Mutation p.P1543L 0.09 tolerated(0.05) benign(0.091) TCGA-HU-A4GC-01 12 78225142 78225142 T G NAV3 5'UTR 0.16 TCGA-HU-A4GC-01 13 100425205 100425205 T A CLYBL Missense_Mutation p.S64T 0.15 tolerated(0.25) benign(0.006) TCGA-HU-A4GC-01 13 23905122 23905122 A C SACS Missense_Mutation p.L4298R 0.17 benign(0.424) TCGA-HU-A4GC-01 13 29598939 29598939 C T MTUS2 Missense_Mutation p.T45M 0.14 deleterious(0) probably_damaging(0.916) TCGA-HU-A4GC-01 13 36241642 36241642 C T NBEA Nonsense_Mutation p.R2845* 0.13 TCGA-HU-A4GC-01 13 39425246 39425246 G C FREM2 Splice_Site p.X2248_splice 0.10 TCGA-HU-A4GC-01 14 102467528 102467528 G A DYNC1H1 Missense_Mutation p.R1411H 0.46 probably_damaging(1) TCGA-HU-A4GC-01 14 21464860 21464860 C T METTL17 Missense_Mutation p.R419W 0.35 deleterious(0) probably_damaging(0.961) TCGA-HU-A4GC-01 14 37132490 37132490 C A PAX9 Silent p.I131I 0.11 TCGA-HU-A4GC-01 14 77845388 77845388 C T SAMD15 Missense_Mutation p.L543F 0.17 deleterious(0.01) probably_damaging(0.977) TCGA-HU-A4GC-01 15 33895329 33895329 G A RYR3 Missense_Mutation p.R643Q 0.14 probably_damaging(0.997) TCGA-HU-A4GC-01 15 52622646 52622646 G A MYO5A Nonsense_Mutation p.R1462* 0.14 TCGA-HU-A4GC-01 15 64017608 64017608 G A HERC1 Missense_Mutation p.R1151W 0.12 benign(0.025) TCGA-HU-A4GC-01 15 68118661 68118661 G A SKOR1 Silent p.S351S 0.14 TCGA-HU-A4GC-01 15 75013993 75013993 G A CYP1A1 Silent p.N297N 0.12 TCGA-HU-A4GC-01 15 78211202 78211202 C T RP11-114H24.7 Intron 0.27 TCGA-HU-A4GC-01 15 84694085 84694085 C T ADAMTSL3 Missense_Mutation p.T1518I 0.12 tolerated(0.22) benign(0.005) TCGA-HU-A4GC-01 16 15715617 15715617 G T KIAA0430 Missense_Mutation p.A871D 0.12 tolerated(0.16) benign(0.421) TCGA-HU-A4GC-01 16 16367902 16367902 C T NOMO3 Missense_Mutation p.P776S 0.11 tolerated(0.07) probably_damaging(1) TCGA-HU-A4GC-01 16 24372728 24372728 C T CACNG3 Silent p.P164P 0.10 TCGA-HU-A4GC-01 16 47533780 47533780 G T PHKB Missense_Mutation p.A94S 0.09 tolerated(0.09) benign(0.013) TCGA-HU-A4GC-01 16 49669760 49669760 G A ZNF423 Silent p.N1101N 0.15 TCGA-HU-A4GC-01 16 58036513 58036513 G A USB1 Missense_Mutation p.E77K 0.17 deleterious(0) probably_damaging(0.969) TCGA-HU-A4GC-01 16 71689227 71689227 G A PHLPP2 Missense_Mutation p.T834M 0.18 deleterious(0) probably_damaging(1) TCGA-HU-A4GC-01 16 72048403 72048403 A G DHODH Missense_Mutation p.N89S 0.20 deleterious(0.02) possibly_damaging(0.609) TCGA-HU-A4GC-01 16 82033056 82033056 C T SDR42E1 Missense_Mutation p.R281H 0.08 tolerated(0.2) benign(0.117) TCGA-HU-A4GC-01 16 85952271 85952271 C T IRF8 Missense_Mutation p.R284W 0.24 deleterious(0.01) probably_damaging(0.93) TCGA-HU-A4GC-01 16 89696881 89696881 C T DPEP1 Silent p.D21D 0.10 TCGA-HU-A4GC-01 17 61886998 61886998 C T DDX42 Nonsense_Mutation p.R411* 0.11 TCGA-HU-A4GC-01 17 68171214 68171214 G A KCNJ2 Missense_Mutation p.V12I 0.15 tolerated(0.06) possibly_damaging(0.483) TCGA-HU-A4GC-01 17 71166296 71166296 G A SSTR2 Missense_Mutation p.V280I 0.11 tolerated(0.1) possibly_damaging(0.49) TCGA-HU-A4GC-01 17 7576928 7576928 T - TP53 Splice_Site p.X307_splice 0.20 TCGA-HU-A4GC-01 18 13056561 13056561 T A CEP192 Silent p.G1324G 0.16 TCGA-HU-A4GC-01 18 47810386 47810386 C T CXXC1 Missense_Mutation p.E435K 0.17 deleterious(0.04) probably_damaging(0.982) TCGA-HU-A4GC-01 19 10934546 10934546 C T DNM2 Nonsense_Mutation p.R622* 0.11 TCGA-HU-A4GC-01 19 1615407 1615407 C T TCF3 Missense_Mutation p.E567K 0.21 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GC-01 19 22941480 22941480 T G ZNF99 Missense_Mutation p.K411Q 0.21 tolerated(0.76) benign(0.059) TCGA-HU-A4GC-01 19 52129341 52129341 C A SIGLEC5 Missense_Mutation p.A470S 0.12 tolerated(0.23) benign(0.133) TCGA-HU-A4GC-01 19 53014774 53014774 T C ZNF578 Silent p.F380F 0.16 TCGA-HU-A4GC-01 19 53855747 53855747 T C ZNF845 Missense_Mutation p.Y607H 0.29 deleterious(0.02) probably_damaging(0.989) TCGA-HU-A4GC-01 19 55494431 55494431 G A NLRP2 Silent p.A455A 0.31 TCGA-HU-A4GC-01 19 9072872 9072872 T C MUC16 Silent p.T4858T 0.12 TCGA-HU-A4GC-01 1 12884983 12884983 C T PRAMEF11 Silent p.P376P 0.29 TCGA-HU-A4GC-01 1 12920055 12920055 G T PRAMEF2 Missense_Mutation p.R265S 0.13 tolerated(0.36) benign(0.007) TCGA-HU-A4GC-01 1 13942425 13942425 C T PDPN 3'UTR 0.08 TCGA-HU-A4GC-01 1 152192118 152192118 C T HRNR Missense_Mutation p.G663S 0.10 unknown(0) TCGA-HU-A4GC-01 1 152957856 152957856 C G SPRR1A Missense_Mutation p.H50Q 0.11 tolerated(0.17) benign(0.048) TCGA-HU-A4GC-01 1 158227221 158227221 T C CD1A Silent p.S298S 0.11 TCGA-HU-A4GC-01 1 158585162 158585162 C T SPTA1 Missense_Mutation p.R2211H 0.31 tolerated(0.14) benign(0.099) TCGA-HU-A4GC-01 1 24124220 24124220 C T GALE Missense_Mutation p.E165K 0.21 deleterious(0) probably_damaging(1) TCGA-HU-A4GC-01 1 40929058 40929058 G C ZFP69B Missense_Mutation p.V468L 0.11 tolerated(0.09) benign(0.421) TCGA-HU-A4GC-01 1 44424237 44424237 C A IPO13 Silent p.I618I 0.21 TCGA-HU-A4GC-01 1 68906582 68906582 A T RPE65 Missense_Mutation p.N199K 0.11 tolerated(0.87) benign(0.197) TCGA-HU-A4GC-01 20 1293318 1293318 C T SDCBP2 Missense_Mutation p.R158H 0.29 tolerated(0.09) benign(0.005) TCGA-HU-A4GC-01 20 13856737 13856737 C T SEL1L2 Missense_Mutation p.V351M 0.06 deleterious(0.01) benign(0.153) TCGA-HU-A4GC-01 20 279294 279294 G A ZCCHC3 Missense_Mutation p.R356K 0.09 tolerated(0.45) benign(0.225) TCGA-HU-A4GC-01 20 42164925 42164925 A G L3MBTL1 Missense_Mutation p.H683R 0.15 tolerated(0.09) benign(0.061) TCGA-HU-A4GC-01 20 44666018 44666018 C A SLC12A5 Silent p.I225I 0.10 TCGA-HU-A4GC-01 20 44669249 44669249 T G SLC12A5 Missense_Mutation p.F307V 0.12 tolerated(0.17) benign(0.158) TCGA-HU-A4GC-01 20 45812032 45812032 C T EYA2 Missense_Mutation p.A510V 0.09 deleterious(0) possibly_damaging(0.63) TCGA-HU-A4GC-01 20 57428503 57428503 C T GNAS Silent p.V61V 0.19 TCGA-HU-A4GC-01 20 57766605 57766605 C T ZNF831 Silent p.C177C 0.14 TCGA-HU-A4GC-01 20 61981615 61981615 C T CHRNA4 Missense_Mutation p.R383H 0.27 tolerated(0.11) benign(0.012) TCGA-HU-A4GC-01 21 41711215 41711215 C T DSCAM Silent p.P446P 0.32 TCGA-HU-A4GC-01 21 45811283 45811283 C T TRPM2 Silent p.Y523Y 0.13 TCGA-HU-A4GC-01 22 18300777 18300777 C T MICAL3 Nonsense_Mutation p.W1550* 0.24 TCGA-HU-A4GC-01 22 19808157 19808157 C T GNB1L Nonsense_Mutation p.W73* 0.11 TCGA-HU-A4GC-01 22 24129284 24129284 G T SMARCB1 5'UTR 0.22 TCGA-HU-A4GC-01 22 31741404 31741404 C T PATZ1 Missense_Mutation p.C62Y 0.15 deleterious_low_confidence(0) unknown(0) TCGA-HU-A4GC-01 22 36892110 36892110 C T FOXRED2 Missense_Mutation p.V510I 0.12 tolerated(0.28) benign(0.18) TCGA-HU-A4GC-01 22 40831511 40831511 G A MKL1 Missense_Mutation p.R19W 0.14 deleterious(0) probably_damaging(0.988) TCGA-HU-A4GC-01 22 41726091 41726091 C T ZC3H7B Missense_Mutation p.A170V 0.19 deleterious(0) probably_damaging(0.993) TCGA-HU-A4GC-01 22 50904463 50904463 G A SBF1 Missense_Mutation p.T313I 0.11 tolerated(0.1) benign(0.35) TCGA-HU-A4GC-01 2 125521689 125521689 T G CNTNAP5 Missense_Mutation p.L832R 0.15 deleterious(0.02) probably_damaging(0.918) TCGA-HU-A4GC-01 2 141598508 141598508 A C LRP1B Missense_Mutation p.L1698R 0.14 possibly_damaging(0.766) TCGA-HU-A4GC-01 2 152300221 152300221 C T RIF1 Nonsense_Mutation p.Q662* 0.15 TCGA-HU-A4GC-01 2 179416514 179416514 C T TTN Nonsense_Mutation p.W30371* 0.19 TCGA-HU-A4GC-01 2 179581872 179581872 G A TTN Missense_Mutation p.A8530V 0.09 TCGA-HU-A4GC-01 2 197990134 197990134 C T ANKRD44 Missense_Mutation p.R174Q 0.08 deleterious(0.01) probably_damaging(0.997) TCGA-HU-A4GC-01 2 202264123 202264123 G C TRAK2 Missense_Mutation p.Q153E 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-HU-A4GC-01 2 226273592 226273592 T C NYAP2 5'UTR 0.11 TCGA-HU-A4GC-01 2 239038920 239038920 G A ESPNL Missense_Mutation p.R522H 0.23 deleterious(0.02) possibly_damaging(0.475) TCGA-HU-A4GC-01 2 51254932 51254932 C T NRXN1 Silent p.P160P 0.46 TCGA-HU-A4GC-01 2 70486655 70486655 C T PCYOX1 Silent p.I92I 0.14 TCGA-HU-A4GC-01 2 73475031 73475031 G A CCT7 Missense_Mutation p.E254K 0.19 deleterious(0) benign(0.443) TCGA-HU-A4GC-01 2 74883792 74883792 T C SEMA4F Missense_Mutation p.S93P 0.17 tolerated(0.29) benign(0.001) TCGA-HU-A4GC-01 2 76975737 76975737 G A LRRTM4 3'UTR 0.19 TCGA-HU-A4GC-01 2 79364432 79364432 A C REG1P RNA 0.13 TCGA-HU-A4GC-01 3 107492466 107492466 G A BBX Missense_Mutation p.R633Q 0.14 deleterious(0) probably_damaging(0.99) TCGA-HU-A4GC-01 3 120673881 120673881 G A STXBP5L Missense_Mutation p.R95Q 0.20 deleterious(0.01) benign(0.009) TCGA-HU-A4GC-01 3 151164474 151164474 A G IGSF10 Missense_Mutation p.S1099P 0.12 tolerated(0.22) benign(0.001) TCGA-HU-A4GC-01 3 152554155 152554155 G A P2RY1 Missense_Mutation p.R195H 0.12 deleterious(0.01) possibly_damaging(0.89) TCGA-HU-A4GC-01 3 184102983 184102983 C T CHRD Missense_Mutation p.T592M 0.12 tolerated(0.15) benign(0.009) TCGA-HU-A4GC-01 3 20167554 20167554 A G KAT2B Missense_Mutation p.H524R 0.18 tolerated(0.12) benign(0.096) TCGA-HU-A4GC-01 3 9166433 9166433 C T SRGAP3 Missense_Mutation p.R79H 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-HU-A4GC-01 3 98189089 98189089 T C OR5K1 Silent p.L223L 0.16 TCGA-HU-A4GC-01 4 126355435 126355435 G A FAT4 Missense_Mutation p.V2352I 0.12 benign(0.05) TCGA-HU-A4GC-01 4 134071538 134071538 C T PCDH10 Silent p.R81R 0.10 TCGA-HU-A4GC-01 4 629698 629698 G A PDE6B Silent p.T217T 0.17 TCGA-HU-A4GC-01 4 66286260 66286260 T C EPHA5 Missense_Mutation p.K476E 0.11 tolerated(0.12) benign(0.415) TCGA-HU-A4GC-01 4 66356378 66356378 G T EPHA5 Silent p.V373V 0.13 TCGA-HU-A4GC-01 4 8398823 8398823 C T ACOX3 Silent p.A299A 0.12 TCGA-HU-A4GC-01 5 13829731 13829731 C T DNAH5 Missense_Mutation p.R2111H 0.38 possibly_damaging(0.812) TCGA-HU-A4GC-01 5 140222280 140222280 C T PCDHA8 Silent p.P458P 0.19 TCGA-HU-A4GC-01 5 140564268 140564268 C T PCDHB16 Missense_Mutation p.R712W 0.15 deleterious_low_confidence(0.01) benign(0.066) TCGA-HU-A4GC-01 5 140812194 140812194 C T PCDHGA12 Missense_Mutation p.T623M 0.26 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-HU-A4GC-01 5 159992888 159992888 G A ATP10B Nonsense_Mutation p.Q1320* 0.18 TCGA-HU-A4GC-01 5 21765106 21765106 T C CDH12 Missense_Mutation p.E499G 0.11 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GC-01 5 2755204 2755204 G A C5orf38 3'UTR 0.22 TCGA-HU-A4GC-01 6 111688795 111688796 - A REV3L Frame_Shift_Ins p.T2066Yfs*6 0.15 TCGA-HU-A4GC-01 6 127648195 127648195 G C ECHDC1 Missense_Mutation p.F111L 0.16 deleterious(0.05) probably_damaging(0.979) TCGA-HU-A4GC-01 6 14135499 14135499 C G CD83 3'UTR 0.24 TCGA-HU-A4GC-01 6 152631626 152631626 T G SYNE1 Missense_Mutation p.K5642Q 0.19 benign(0.019) TCGA-HU-A4GC-01 6 28227351 28227351 C T NKAPL Missense_Mutation p.R68C 0.11 tolerated(0.12) unknown(0) TCGA-HU-A4GC-01 6 56471761 56471761 T A DST Intron 0.11 TCGA-HU-A4GC-01 7 126086219 126086219 C T GRM8 Missense_Mutation p.E880K 0.19 deleterious(0.01) benign(0.202) TCGA-HU-A4GC-01 7 136700439 136700439 A G CHRM2 Missense_Mutation p.Q276R 0.16 tolerated(0.67) benign(0.009) TCGA-HU-A4GC-01 7 138968977 138968977 C T UBN2 Missense_Mutation p.P1109L 0.08 deleterious_low_confidence(0) benign(0.05) TCGA-HU-A4GC-01 7 150776935 150776935 G C FASTK Missense_Mutation p.L53V 0.33 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-HU-A4GC-01 7 27204564 27204564 G A HOXA9 Silent p.S171S 0.32 TCGA-HU-A4GC-01 7 42088263 42088263 G A GLI3 Missense_Mutation p.P169L 0.22 deleterious(0) benign(0.054) TCGA-HU-A4GC-01 7 56170694 56170694 C T CHCHD2 Missense_Mutation p.G104E 0.14 tolerated(0.12) benign(0.097) TCGA-HU-A4GC-01 7 5769126 5769126 G A RNF216 Silent p.L442L 0.17 TCGA-HU-A4GC-01 7 6066556 6066556 G A EIF2AK1 Missense_Mutation p.L523F 0.12 deleterious(0) probably_damaging(1) TCGA-HU-A4GC-01 8 104898096 104898096 T C RIMS2 Silent p.S423S 0.30 TCGA-HU-A4GC-01 8 10584132 10584132 C T SOX7 Missense_Mutation p.V147M 0.25 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GC-01 8 124096454 124096454 G A TBC1D31 Silent p.S131S 0.22 TCGA-HU-A4GC-01 8 126056089 126056089 G A KIAA0196 Missense_Mutation p.A943V 0.10 tolerated(0.62) benign(0.011) TCGA-HU-A4GC-01 8 139890073 139890073 T C COL22A1 Missense_Mutation p.K193R 0.15 unknown(0) TCGA-HU-A4GC-01 8 142367371 142367371 C T GPR20 Missense_Mutation p.R218H 0.27 deleterious(0) probably_damaging(1) TCGA-HU-A4GC-01 8 144659014 144659014 T A NAPRT1 Splice_Site p.X229_splice 0.37 TCGA-HU-A4GC-01 8 48842451 48842451 T C PRKDC Missense_Mutation p.I672V 0.13 benign(0.005) TCGA-HU-A4GC-01 8 52370223 52370223 A G PXDNL Missense_Mutation p.S273P 0.41 tolerated(0.08) possibly_damaging(0.718) TCGA-HU-A4GC-01 8 68864659 68864659 C T PREX2 Silent p.R10R 0.64 TCGA-HU-A4GC-01 8 70515528 70515528 T C SULF1 Missense_Mutation p.L388P 0.38 deleterious(0) probably_damaging(0.995) TCGA-HU-A4GC-01 8 72754837 72754837 C T MSC 3'UTR 0.14 TCGA-HU-A4GC-01 8 72754863 72754863 C T MSC 3'UTR 0.10 TCGA-HU-A4GC-01 8 92407455 92407455 T A SLC26A7 3'Flank 0.18 TCGA-HU-A4GC-01 9 135458231 135458231 G A BARHL1 Missense_Mutation p.R16H 0.17 deleterious_low_confidence(0.02) probably_damaging(0.98) TCGA-HU-A4GC-01 9 138387363 138387363 G A C9orf116 Silent p.I107I 0.14 TCGA-HU-A4GC-01 9 94493380 94493380 T A ROR2 Missense_Mutation p.K332M 0.11 tolerated(0.07) benign(0.061) TCGA-HU-A4GC-01 X 118239097 118239097 C T KIAA1210 Missense_Mutation p.R309H 0.32 tolerated(0.32) benign(0.073) TCGA-HU-A4GC-01 X 135430104 135430104 T G GPR112 Silent p.T1413T 0.34 TCGA-HU-A4GC-01 X 153713953 153713953 G A UBL4A Silent p.D133D 0.35 TCGA-HU-A4GC-01 X 21675868 21675868 G A KLHL34 Silent p.G13G 0.15 TCGA-HU-A4GC-01 X 92926799 92926799 T C NAP1L3 Missense_Mutation p.K502R 0.30 tolerated_low_confidence(1) benign(0) TCGA-HU-A4GD-01 10 135440184 135440184 C A FRG2B Missense_Mutation p.Q21H 0.06 tolerated(0.09) benign(0.032) TCGA-HU-A4GD-01 10 43127820 43127820 C G ZNF33B Missense_Mutation p.W26S 0.36 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GD-01 11 110106915 110106915 G A RDX Missense_Mutation p.A418V 0.28 tolerated(0.07) possibly_damaging(0.521) TCGA-HU-A4GD-01 11 130011397 130011397 T C APLP2 Missense_Mutation p.I655T 0.41 tolerated(0.39) benign(0.371) TCGA-HU-A4GD-01 11 133402211 133402211 A T OPCML Missense_Mutation p.H3Q 0.53 tolerated_low_confidence(0.49) benign(0) TCGA-HU-A4GD-01 11 2356949 2356949 G A CD81-AS1 Intron 0.62 TCGA-HU-A4GD-01 11 55322167 55322167 G C OR4C15 Missense_Mutation p.V129L 0.06 deleterious_low_confidence(0.01) benign(0.225) TCGA-HU-A4GD-01 11 6499103 6499103 G A ARFIP2 Nonsense_Mutation p.R239* 0.70 TCGA-HU-A4GD-01 11 6789325 6789325 G A OR2AG2 Silent p.L288L 0.41 TCGA-HU-A4GD-01 12 109536374 109536374 G C UNG Silent p.V90V 0.51 TCGA-HU-A4GD-01 12 11338798 11338799 - A TAS2R42 Frame_Shift_Ins p.S249Ffs*55 0.31 TCGA-HU-A4GD-01 12 120572458 120572458 G A GCN1L1 Missense_Mutation p.R2361W 0.51 probably_damaging(0.999) TCGA-HU-A4GD-01 12 124107237 124107237 G A EIF2B1 Silent p.F233F 0.09 TCGA-HU-A4GD-01 12 81102783 81102783 C A MYF6 3'UTR 0.34 TCGA-HU-A4GD-01 13 113783898 113783898 G A F10 Missense_Mutation p.R68H 0.31 deleterious(0.02) benign(0.284) TCGA-HU-A4GD-01 14 105223068 105223068 C T SIVA1 Silent p.S147S 0.20 TCGA-HU-A4GD-01 14 67610161 67610161 G A GPHN Missense_Mutation p.E611K 0.49 tolerated(0.08) possibly_damaging(0.775) TCGA-HU-A4GD-01 15 34394921 34394921 C G PGBD4 Missense_Mutation p.S63R 0.69 tolerated_low_confidence(0.43) benign(0.017) TCGA-HU-A4GD-01 16 20430784 20430784 G T ACSM5 Intron 0.34 TCGA-HU-A4GD-01 16 55794575 55794575 C T CES1P1 RNA 0.25 TCGA-HU-A4GD-01 16 66919617 66919617 A G PDP2 Missense_Mutation p.H477R 0.22 deleterious(0) probably_damaging(0.915) TCGA-HU-A4GD-01 16 70405340 70405340 C G DDX19A Missense_Mutation p.P417A 0.18 tolerated(0.43) probably_damaging(0.986) TCGA-HU-A4GD-01 16 87445923 87445923 C T ZCCHC14 Missense_Mutation p.V665M 0.59 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GD-01 17 1542118 1542118 C T SCARF1 Missense_Mutation p.R449Q 0.75 tolerated(0.26) benign(0.017) TCGA-HU-A4GD-01 17 26671730 26671730 C T TNFAIP1 3'UTR 0.60 TCGA-HU-A4GD-01 17 26692243 26692243 C G VTN 3'Flank 0.19 TCGA-HU-A4GD-01 17 27014416 27014416 C T SUPT6H Missense_Mutation p.A978V 0.38 tolerated(0.27) benign(0.052) TCGA-HU-A4GD-01 17 39334187 39334187 C T KRTAP4-2 Missense_Mutation p.R77H 0.50 tolerated(0.07) benign(0.301) TCGA-HU-A4GD-01 17 43320550 43320550 C A FMNL1 Silent p.L692L 0.28 TCGA-HU-A4GD-01 17 48356643 48356644 - GG TMEM92 Frame_Shift_Ins p.I154Afs*71 0.39 TCGA-HU-A4GD-01 17 61987473 61987473 T C CSHL1 Intron 0.51 TCGA-HU-A4GD-01 17 7578265 7578265 A T TP53 Missense_Mutation p.I195N 0.59 deleterious(0) probably_damaging(1) TCGA-HU-A4GD-01 18 14851958 14851958 A T ANKRD30B Missense_Mutation p.S1220C 0.21 tolerated(0.07) benign(0.006) TCGA-HU-A4GD-01 18 736827 736827 A G YES1 Silent p.N424N 0.29 TCGA-HU-A4GD-01 19 2271925 2271925 G A OAZ1 Missense_Mutation p.G146S 0.61 deleterious(0.05) probably_damaging(0.93) TCGA-HU-A4GD-01 19 38573204 38573204 G A SIPA1L3 Silent p.P333P 0.12 TCGA-HU-A4GD-01 19 39412044 39412044 C T SARS2 Missense_Mutation p.G195R 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-HU-A4GD-01 19 44537105 44537105 A C ZNF222 Missense_Mutation p.K466N 0.13 deleterious(0.05) benign(0.142) TCGA-HU-A4GD-01 19 44933480 44933480 G C ZNF229 Missense_Mutation p.D492E 0.11 tolerated(1) possibly_damaging(0.545) TCGA-HU-A4GD-01 19 49548333 49548333 C T CGB5 Missense_Mutation p.R94C 0.63 deleterious(0) probably_damaging(0.972) TCGA-HU-A4GD-01 19 53208636 53208636 T C ZNF611 Missense_Mutation p.R558G 0.18 deleterious(0.03) probably_damaging(0.999) TCGA-HU-A4GD-01 19 57329167 57329167 G A PEG3 Missense_Mutation p.T270M 0.64 deleterious(0.02) probably_damaging(0.911) TCGA-HU-A4GD-01 1 150483401 150483401 G A ECM1 Nonsense_Mutation p.W172* 0.17 TCGA-HU-A4GD-01 1 150483459 150483459 G C ECM1 Missense_Mutation p.D192H 0.16 deleterious(0) probably_damaging(0.984) TCGA-HU-A4GD-01 1 150483497 150483497 G A ECM1 Silent p.L204L 0.15 TCGA-HU-A4GD-01 1 150483588 150483588 G A ECM1 Missense_Mutation p.E235K 0.17 tolerated(0.08) possibly_damaging(0.702) TCGA-HU-A4GD-01 1 150483691 150483691 G A ECM1 Intron 0.19 TCGA-HU-A4GD-01 1 150483912 150483912 G A ECM1 Intron 0.21 TCGA-HU-A4GD-01 1 150484238 150484238 G A ECM1 Silent p.L365L 0.21 TCGA-HU-A4GD-01 1 150484301 150484301 G T ECM1 Missense_Mutation p.W386C 0.21 tolerated(0.06) possibly_damaging(0.846) TCGA-HU-A4GD-01 1 16101285 16101285 T G FBLIM1 Missense_Mutation p.F295C 0.08 deleterious(0) probably_damaging(0.987) TCGA-HU-A4GD-01 1 180158716 180158716 C G QSOX1 Missense_Mutation p.N349K 0.79 deleterious(0.02) benign(0.235) TCGA-HU-A4GD-01 1 19583562 19583562 T A MRTO4 Missense_Mutation p.F66I 0.54 tolerated(0.07) possibly_damaging(0.735) TCGA-HU-A4GD-01 1 21100152 21100152 C T HP1BP3 Intron 0.16 TCGA-HU-A4GD-01 1 40208945 40208945 A G PPIE Missense_Mutation p.I87V 0.09 tolerated(0.15) benign(0.052) TCGA-HU-A4GD-01 1 89448701 89448701 C T RBMXL1 Missense_Mutation p.R270H 0.29 tolerated(0.07) possibly_damaging(0.691) TCGA-HU-A4GD-01 20 20349829 20349829 C T INSM1 Silent p.C306C 0.22 TCGA-HU-A4GD-01 20 55949845 55949845 C T RAE1 Silent p.Y336Y 0.08 TCGA-HU-A4GD-01 21 42080394 42080394 A G DSCAM Missense_Mutation p.V116A 0.05 deleterious(0.01) benign(0.338) TCGA-HU-A4GD-01 22 19967629 19967629 A T ARVCF Missense_Mutation p.S345T 0.50 tolerated(0.22) probably_damaging(0.977) TCGA-HU-A4GD-01 22 38823654 38823654 C T KCNJ4 Missense_Mutation p.V162I 0.41 tolerated(1) benign(0.024) TCGA-HU-A4GD-01 2 106497824 106497824 G A NCK2 Silent p.A89A 0.72 TCGA-HU-A4GD-01 2 107460276 107460276 G A ST6GAL2 Missense_Mutation p.P53L 0.09 probably_damaging(0.99) TCGA-HU-A4GD-01 2 15607529 15607529 A G NBAS Missense_Mutation p.L674S 0.17 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GD-01 2 179408680 179408680 G C TTN Missense_Mutation p.T32064S 0.40 TCGA-HU-A4GD-01 2 190584318 190584326 AATCTATTA - ANKAR In_Frame_Del p.N749_L751del 0.62 TCGA-HU-A4GD-01 2 20870856 20870856 G A GDF7 Missense_Mutation p.G342R 0.29 deleterious(0.01) probably_damaging(0.926) TCGA-HU-A4GD-01 2 217285091 217285091 C A SMARCAL1 Nonsense_Mutation p.S311* 0.40 TCGA-HU-A4GD-01 2 230725133 230725133 G T TRIP12 Intron 0.63 TCGA-HU-A4GD-01 2 238303696 238303696 G C COL6A3 Silent p.V81V 0.17 TCGA-HU-A4GD-01 2 27500827 27500827 C T DNAJC5G Missense_Mutation p.H107Y 0.29 deleterious(0) probably_damaging(0.997) TCGA-HU-A4GD-01 2 98275089 98275089 G A ACTR1B Missense_Mutation p.T153M 0.19 deleterious(0.01) probably_damaging(0.957) TCGA-HU-A4GD-01 3 101283802 101283802 A G TRMT10C Silent p.E59E 0.08 TCGA-HU-A4GD-01 3 122419782 122419782 C T PARP14 Missense_Mutation p.S794F 0.06 tolerated(0.69) benign(0.003) TCGA-HU-A4GD-01 3 185997678 185997678 T C DGKG Missense_Mutation p.T252A 0.19 deleterious(0.02) probably_damaging(0.935) TCGA-HU-A4GD-01 3 52426963 52426963 G A DNAH1 Missense_Mutation p.V3466M 0.11 probably_damaging(0.975) TCGA-HU-A4GD-01 4 118975431 118975431 C G NDST3 Missense_Mutation p.D122E 0.11 tolerated(0.4) benign(0.002) TCGA-HU-A4GD-01 4 122071373 122071373 G A TNIP3 Missense_Mutation p.A242V 0.50 tolerated(0.06) benign(0.015) TCGA-HU-A4GD-01 4 159076867 159076867 G T FAM198B Missense_Mutation p.Q349K 0.25 deleterious(0.04) benign(0) TCGA-HU-A4GD-01 4 177713378 177713378 C T VEGFC Missense_Mutation p.A30T 0.65 tolerated_low_confidence(0.36) benign(0.284) TCGA-HU-A4GD-01 5 101572693 101572693 A C SLCO4C1 Missense_Mutation p.F682V 0.30 deleterious(0) possibly_damaging(0.719) TCGA-HU-A4GD-01 5 136328253 136328253 C T SPOCK1 Missense_Mutation p.R209Q 0.28 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GD-01 5 159781800 159781800 G A C1QTNF2 Silent p.G118G 0.56 TCGA-HU-A4GD-01 5 16067488 16067488 T A MARCH11 3'UTR 0.08 TCGA-HU-A4GD-01 5 172315710 172315710 T G ERGIC1 Missense_Mutation p.I10S 0.33 deleterious(0) probably_damaging(0.985) TCGA-HU-A4GD-01 5 40853093 40853094 - T CARD6 Frame_Shift_Ins p.T557Hfs*2 0.32 TCGA-HU-A4GD-01 5 6620357 6620357 T C NSUN2 Missense_Mutation p.H226R 0.22 deleterious(0) probably_damaging(1) TCGA-HU-A4GD-01 6 151672866 151672866 C A AKAP12 Missense_Mutation p.Q1114K 0.33 tolerated(0.07) benign(0.182) TCGA-HU-A4GD-01 6 153311232 153311232 T C MTRF1L Splice_Site p.X315_splice 0.22 TCGA-HU-A4GD-01 6 33638124 33638124 C T ITPR3 Missense_Mutation p.R738C 0.11 deleterious(0.01) probably_damaging(0.973) TCGA-HU-A4GD-01 6 38950205 38950205 T G DNAH8 Missense_Mutation p.I4089M 0.62 possibly_damaging(0.812) TCGA-HU-A4GD-01 6 42146128 42146128 C T GUCA1A Silent p.N104N 0.70 TCGA-HU-A4GD-01 7 150324850 150324850 G A GIMAP6 Missense_Mutation p.S279F 0.09 tolerated(0.34) benign(0.025) TCGA-HU-A4GD-01 7 70886089 70886089 C A WBSCR17 Silent p.I320I 0.09 TCGA-HU-A4GD-01 7 74197927 74197927 C A NCF1 Missense_Mutation p.P212T 0.56 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GD-01 7 82387999 82387999 C T PCLO Missense_Mutation p.M5107I 0.62 unknown(0) TCGA-HU-A4GD-01 8 10473978 10473978 C T RP1L1 Silent p.G243G 0.67 TCGA-HU-A4GD-01 8 109214102 109214102 C G EIF3E 3'UTR 0.17 TCGA-HU-A4GD-01 8 110448585 110448585 T C PKHD1L1 Missense_Mutation p.L1175S 0.25 deleterious(0) possibly_damaging(0.85) TCGA-HU-A4GD-01 8 118183401 118183401 G T SLC30A8 Missense_Mutation p.A320S 0.19 deleterious(0) possibly_damaging(0.825) TCGA-HU-A4GD-01 8 144399936 144399936 G A TOP1MT Silent p.N429N 0.13 TCGA-HU-A4GD-01 8 33356828 33356828 T A MAK16 3'UTR 0.37 TCGA-HU-A4GD-01 8 59359985 59359985 C G UBXN2B Missense_Mutation p.P291A 0.16 deleterious(0) possibly_damaging(0.508) TCGA-HU-A4GD-01 8 79510755 79510755 G C PKIA Missense_Mutation p.D46H 0.05 tolerated(0.19) probably_damaging(0.998) TCGA-HU-A4GD-01 9 102988399 102988399 A G INVS Missense_Mutation p.K110R 0.39 tolerated(0.22) possibly_damaging(0.456) TCGA-HU-A4GD-01 9 137801728 137801728 G T FCN1 Missense_Mutation p.S299R 0.35 deleterious(0.04) possibly_damaging(0.65) TCGA-HU-A4GD-01 9 17236494 17236494 C T CNTLN Missense_Mutation p.R253C 0.44 tolerated(0.17) benign(0.048) TCGA-HU-A4GD-01 9 73442845 73442845 G A TRPM3 Silent p.N297N 0.24 TCGA-HU-A4GD-01 X 130409205 130409205 G A IGSF1 Silent p.G1085G 0.81 TCGA-HU-A4GD-01 X 153040483 153040483 C T PLXNB3 Silent p.D1383D 0.84 TCGA-HU-A4GD-01 X 65476078 65476078 G C HEPH Missense_Mutation p.W988C 0.41 deleterious(0) probably_damaging(0.987) TCGA-HU-A4GF-01 10 112352843 112352843 A G SMC3 Missense_Mutation p.M609V 0.60 deleterious(0.01) possibly_damaging(0.488) TCGA-HU-A4GF-01 10 30336525 30336525 G A KIAA1462 Missense_Mutation p.R73C 0.27 deleterious(0.02) benign(0.055) TCGA-HU-A4GF-01 10 48371038 48371038 G T ZNF488 Missense_Mutation p.R169L 0.31 tolerated(0.31) benign(0.283) TCGA-HU-A4GF-01 10 55587203 55587203 C T PCDH15 Silent p.P1439P 0.35 TCGA-HU-A4GF-01 10 73544160 73544160 C T CDH23 Missense_Mutation p.P1834S 0.07 tolerated(0.09) probably_damaging(0.932) TCGA-HU-A4GF-01 10 84718771 84718810 AGCATCCAGCACAATGGCAAAGTCAGAGAACTTGGTGAAG - NRG3 Frame_Shift_Del p.S410Mfs*15 0.53 TCGA-HU-A4GF-01 10 85991924 85991924 G A LRIT1 Missense_Mutation p.T544M 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-HU-A4GF-01 11 118392872 118392872 G C KMT2A Silent p.R3968R 0.06 TCGA-HU-A4GF-01 11 128638116 128638116 C T FLI1 Missense_Mutation p.P112S 0.30 tolerated(0.27) benign(0.178) TCGA-HU-A4GF-01 11 132813024 132813024 G A OPCML 5'UTR 0.38 TCGA-HU-A4GF-01 11 133802003 133802003 T A IGSF9B Missense_Mutation p.K358M 0.32 deleterious(0.01) probably_damaging(0.969) TCGA-HU-A4GF-01 11 26725134 26725134 G T SLC5A12 Silent p.V255V 0.28 TCGA-HU-A4GF-01 11 34182568 34182568 C T ABTB2 Missense_Mutation p.R760Q 0.32 tolerated(0.08) benign(0.419) TCGA-HU-A4GF-01 11 46772096 46772112 AGAGCCAATCTTCTTAA - CKAP5 Frame_Shift_Del p.F1837* 0.22 TCGA-HU-A4GF-01 11 5862525 5862525 A G OR52E6 Silent p.G201G 0.11 TCGA-HU-A4GF-01 11 60183179 60183179 A C MS4A14 Missense_Mutation p.E279D 0.26 deleterious(0.02) possibly_damaging(0.905) TCGA-HU-A4GF-01 11 6638271 6638271 G A TPP1 Nonsense_Mutation p.R208* 0.39 TCGA-HU-A4GF-01 11 67938540 67938540 A C SUV420H1 Missense_Mutation p.Y307D 0.35 deleterious(0) probably_damaging(1) TCGA-HU-A4GF-01 11 92087432 92087432 T C FAT3 Silent p.I718I 0.30 TCGA-HU-A4GF-01 12 122801401 122801401 A C CLIP1 Missense_Mutation p.L1123W 0.33 deleterious(0) probably_damaging(0.997) TCGA-HU-A4GF-01 12 123345886 123345887 - G HIP1R Frame_Shift_Ins p.A996Gfs*2 0.21 TCGA-HU-A4GF-01 12 40671948 40671948 A C LRRK2 Missense_Mutation p.K709T 0.18 tolerated(0.15) probably_damaging(0.999) TCGA-HU-A4GF-01 12 43826503 43826503 A G ADAMTS20 Silent p.V944V 0.14 TCGA-HU-A4GF-01 12 55421113 55421113 C A NEUROD4 Missense_Mutation p.P297H 0.29 tolerated(0.54) benign(0) TCGA-HU-A4GF-01 12 56221845 56221845 G A DNAJC14 Missense_Mutation p.R200C 0.29 tolerated(0.07) benign(0.022) TCGA-HU-A4GF-01 12 5708660 5708660 G T ANO2 Nonsense_Mutation p.Y741* 0.38 TCGA-HU-A4GF-01 12 64891001 64891003 GAA - TBK1 In_Frame_Del p.E643del 0.16 TCGA-HU-A4GF-01 12 6499832 6499832 A G LTBR Missense_Mutation p.N346S 0.18 tolerated(0.21) benign(0.125) TCGA-HU-A4GF-01 12 88376963 88376963 G A C12orf50 Missense_Mutation p.T379M 0.34 tolerated(0.47) benign(0.005) TCGA-HU-A4GF-01 13 111980581 111980581 G A TEX29 Missense_Mutation p.R37Q 0.20 tolerated(0.3) benign(0) TCGA-HU-A4GF-01 13 114157822 114157822 A C TMCO3 Missense_Mutation p.Q319H 0.06 deleterious(0) probably_damaging(1) TCGA-HU-A4GF-01 13 42876004 42876004 A T AKAP11 Missense_Mutation p.K1041M 0.11 tolerated(0.05) probably_damaging(0.94) TCGA-HU-A4GF-01 14 104056650 104056650 C T APOPT1 3'UTR 0.34 TCGA-HU-A4GF-01 14 23243205 23243205 A G SLC7A7 Missense_Mutation p.F456L 0.29 deleterious(0.02) benign(0.003) TCGA-HU-A4GF-01 14 23873529 23873529 G T MYH6 Silent p.V237V 0.29 TCGA-HU-A4GF-01 14 51347206 51347206 G A ABHD12B Silent p.K124K 0.10 TCGA-HU-A4GF-01 14 94008914 94008914 G A UNC79 Missense_Mutation p.D366N 0.68 deleterious(0.03) probably_damaging(0.998) TCGA-HU-A4GF-01 14 96887177 96887177 T C AK7 Missense_Mutation p.F173L 0.32 tolerated(0.17) benign(0.043) TCGA-HU-A4GF-01 15 59499721 59499721 T C LDHAL6B Silent p.Y194Y 0.68 TCGA-HU-A4GF-01 15 64967246 64967247 - A ZNF609 Frame_Shift_Ins p.K735Efs*8 0.29 TCGA-HU-A4GF-01 15 68118849 68118849 G A SKOR1 Missense_Mutation p.R414Q 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.684) TCGA-HU-A4GF-01 15 69080237 69080237 T G ANP32A Missense_Mutation p.N26H 0.17 deleterious(0) probably_damaging(0.971) TCGA-HU-A4GF-01 16 55522479 55522479 C A MMP2 Missense_Mutation p.A286D 0.21 deleterious(0.02) possibly_damaging(0.869) TCGA-HU-A4GF-01 16 57954299 57954299 G C CNGB1 Missense_Mutation p.P598R 0.08 deleterious(0) possibly_damaging(0.596) TCGA-HU-A4GF-01 17 10369962 10369962 G A MYH4 Missense_Mutation p.A34V 0.06 deleterious(0.02) benign(0.177) TCGA-HU-A4GF-01 17 11713633 11713633 C A DNAH9 Missense_Mutation p.A2885D 0.27 possibly_damaging(0.598) TCGA-HU-A4GF-01 17 41477310 41477310 C T ARL4D Silent p.I70I 0.27 TCGA-HU-A4GF-01 17 48819054 48819054 C G LUC7L3 Missense_Mutation p.Q130E 0.07 tolerated(0.45) unknown(0) TCGA-HU-A4GF-01 17 61557756 61557756 C T ACE Silent p.D238D 0.29 TCGA-HU-A4GF-01 17 7578542 7578542 G C TP53 Missense_Mutation p.L130V 0.67 deleterious(0) probably_damaging(0.997) TCGA-HU-A4GF-01 18 13059147 13059147 G A CEP192 Missense_Mutation p.E1442K 0.28 deleterious(0.01) probably_damaging(0.981) TCGA-HU-A4GF-01 18 51053116 51053116 A T DCC Missense_Mutation p.E1414V 0.22 deleterious(0) benign(0.232) TCGA-HU-A4GF-01 18 63511131 63511131 G A CDH7 Silent p.L355L 0.44 TCGA-HU-A4GF-01 19 10398776 10398776 C T ICAM4 Silent p.G245G 0.23 TCGA-HU-A4GF-01 19 1556548 1556548 G A MEX3D Missense_Mutation p.P324S 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-HU-A4GF-01 19 19129942 19129942 A C SUGP2 Missense_Mutation p.L609R 0.07 tolerated(0.41) benign(0.281) TCGA-HU-A4GF-01 19 36002331 36002331 G A DMKN Silent p.S300S 0.26 TCGA-HU-A4GF-01 19 36831049 36831049 G C ZFP14 3'UTR 0.50 TCGA-HU-A4GF-01 19 37935838 37935838 G A ZNF569 5'UTR 0.35 TCGA-HU-A4GF-01 19 39233065 39233065 G A CAPN12 Silent p.G137G 0.41 TCGA-HU-A4GF-01 19 51227348 51227348 C T CLEC11A Silent p.L112L 0.35 TCGA-HU-A4GF-01 19 52715979 52715979 C T PPP2R1A Missense_Mutation p.R182W 0.25 deleterious(0) probably_damaging(1) TCGA-HU-A4GF-01 19 56041169 56041169 C - SBK2 Frame_Shift_Del p.R327Afs*? 0.26 TCGA-HU-A4GF-01 19 57640144 57640144 A C USP29 Missense_Mutation p.K34T 0.06 deleterious(0) probably_damaging(0.996) TCGA-HU-A4GF-01 19 57641483 57641483 A C USP29 Missense_Mutation p.E480D 0.37 deleterious(0) probably_damaging(0.997) TCGA-HU-A4GF-01 1 114429206 114429206 A G BCL2L15 Silent p.L68L 0.28 TCGA-HU-A4GF-01 1 120284422 120284422 A C PHGDH Missense_Mutation p.S371R 0.31 tolerated(0.23) benign(0.056) TCGA-HU-A4GF-01 1 152286041 152286041 C T FLG Missense_Mutation p.G441R 0.69 benign(0.087) TCGA-HU-A4GF-01 1 153303244 153303244 C A PGLYRP4 Nonstop_Mutation p.*374Lext*194 0.18 TCGA-HU-A4GF-01 1 157485420 157485420 T C FCRL5 3'UTR 0.24 TCGA-HU-A4GF-01 1 158585114 158585114 A G SPTA1 Missense_Mutation p.L2227P 0.18 deleterious(0.01) probably_damaging(0.984) TCGA-HU-A4GF-01 1 158621218 158621218 T C SPTA1 Missense_Mutation p.K1139R 0.23 tolerated(0.07) benign(0.134) TCGA-HU-A4GF-01 1 173907768 173907768 A - RC3H1 3'UTR 0.10 TCGA-HU-A4GF-01 1 185892705 185892705 T A HMCN1 Missense_Mutation p.F402Y 0.35 possibly_damaging(0.827) TCGA-HU-A4GF-01 1 186948546 186948546 A G PLA2G4A Missense_Mutation p.N687S 0.42 tolerated(0.14) benign(0.096) TCGA-HU-A4GF-01 1 228461923 228461923 G A OBSCN Missense_Mutation p.E2196K 0.81 benign(0.055) TCGA-HU-A4GF-01 1 228645509 228645509 G A HIST3H2A Missense_Mutation p.R4C 0.17 deleterious_low_confidence(0.01) benign(0.012) TCGA-HU-A4GF-01 1 235918947 235918947 G C LYST Missense_Mutation p.L2354V 0.24 tolerated(0.08) benign(0.138) TCGA-HU-A4GF-01 1 240370555 240370555 T C FMN2 Missense_Mutation p.S815P 0.25 unknown(0) TCGA-HU-A4GF-01 1 33149530 33149530 G A RBBP4 3'UTR 0.22 TCGA-HU-A4GF-01 1 57602299 57602299 C T DAB1 Missense_Mutation p.A75T 0.18 deleterious(0) benign(0.185) TCGA-HU-A4GF-01 1 7723500 7723500 G A CAMTA1 Missense_Mutation p.G298E 0.04 deleterious(0.02) possibly_damaging(0.548) TCGA-HU-A4GF-01 1 94643168 94643168 C A ARHGAP29 Missense_Mutation p.D969Y 0.08 deleterious(0) possibly_damaging(0.798) TCGA-HU-A4GF-01 1 94643169 94643169 A C ARHGAP29 Missense_Mutation p.S968R 0.08 tolerated(0.59) benign(0.06) TCGA-HU-A4GF-01 1 95538430 95538430 C T ALG14 Missense_Mutation p.A9T 0.11 tolerated_low_confidence(0.18) benign(0.118) TCGA-HU-A4GF-01 20 34144843 34144844 CT - ERGIC3 Frame_Shift_Del p.S333Afs*50 0.16 TCGA-HU-A4GF-01 20 3565396 3565396 A G ATRN Missense_Mutation p.E1018G 0.04 deleterious(0.01) probably_damaging(0.93) TCGA-HU-A4GF-01 20 42204996 42204996 C T SGK2 Missense_Mutation p.R336W 0.14 deleterious(0) probably_damaging(1) TCGA-HU-A4GF-01 20 42574587 42574587 C T TOX2 Intron 0.09 TCGA-HU-A4GF-01 20 47991257 47991257 G A KCNB1 Silent p.T280T 0.16 TCGA-HU-A4GF-01 21 37418071 37418071 A G SETD4 Missense_Mutation p.S179P 0.33 deleterious(0.01) possibly_damaging(0.905) TCGA-HU-A4GF-01 22 20939222 20939222 C T MED15 Silent p.N628N 0.30 TCGA-HU-A4GF-01 22 21991026 21991026 G A CCDC116 Silent p.E503E 0.08 TCGA-HU-A4GF-01 22 23603674 23603674 C T BCR Missense_Mutation p.R567C 0.27 deleterious(0.01) probably_damaging(0.965) TCGA-HU-A4GF-01 22 38494145 38494145 C A BAIAP2L2 Silent p.A130A 0.33 TCGA-HU-A4GF-01 22 40069984 40069984 G A CACNA1I Silent p.K1600K 0.11 TCGA-HU-A4GF-01 2 108479240 108479240 C T RGPD4 Nonsense_Mutation p.R770* 0.33 TCGA-HU-A4GF-01 2 136562354 136562354 C T LCT Missense_Mutation p.A1483T 0.39 deleterious(0.03) possibly_damaging(0.783) TCGA-HU-A4GF-01 2 151331486 151331486 T C RND3 Missense_Mutation p.Y84C 0.26 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GF-01 2 175619140 175619140 G A CHRNA1 Missense_Mutation p.A141V 0.41 deleterious(0) probably_damaging(1) TCGA-HU-A4GF-01 2 187503013 187503013 C A ITGAV Nonsense_Mutation p.S271* 0.33 TCGA-HU-A4GF-01 2 196877623 196877623 G A DNAH7 Missense_Mutation p.R293C 0.20 deleterious(0.01) probably_damaging(0.915) TCGA-HU-A4GF-01 2 220312985 220312985 G A SPEG Missense_Mutation p.A369T 0.41 benign(0.002) TCGA-HU-A4GF-01 2 220333960 220333960 C T SPEG Missense_Mutation p.R1192W 0.41 probably_damaging(0.995) TCGA-HU-A4GF-01 2 229046307 229046307 C T SPHKAP Missense_Mutation p.G3D 0.13 tolerated_low_confidence(0.09) possibly_damaging(0.454) TCGA-HU-A4GF-01 2 242076420 242076420 T G PASK Missense_Mutation p.K379T 0.09 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GF-01 2 27480102 27480102 G A SLC30A3 Missense_Mutation p.R233W 0.56 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GF-01 2 44549026 44549026 A - PREPL Frame_Shift_Del p.N679Ifs*4 0.14 TCGA-HU-A4GF-01 2 50280600 50280600 C T NRXN1 Missense_Mutation p.E1353K 0.18 deleterious(0.02) benign(0.187) TCGA-HU-A4GF-01 2 64148443 64148443 T A VPS54 Missense_Mutation p.D589V 0.05 tolerated(0.13) benign(0.017) TCGA-HU-A4GF-01 2 64189220 64189220 G A VPS54 Nonsense_Mutation p.Q328* 0.05 TCGA-HU-A4GF-01 2 74686657 74686657 C T WBP1 Intron 0.22 TCGA-HU-A4GF-01 2 79312349 79312349 T G REG1B Missense_Mutation p.K165T 0.23 deleterious(0.05) benign(0.279) TCGA-HU-A4GF-01 2 90153759 90153759 G A IGKV3D-15 Silent p.A5A 0.19 TCGA-HU-A4GF-01 2 95847411 95847411 C T ZNF2 Missense_Mutation p.H280Y 0.42 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GF-01 3 139069035 139069035 C A MRPS22 Silent p.V173V 0.41 TCGA-HU-A4GF-01 3 153840224 153840224 G T ARHGEF26 Missense_Mutation p.R148L 0.24 tolerated_low_confidence(0.08) benign(0.004) TCGA-HU-A4GF-01 3 2861218 2861218 G A CNTN4 Missense_Mutation p.R136Q 0.30 tolerated(0.1) benign(0.002) TCGA-HU-A4GF-01 3 33161979 33161980 AT - CRTAP Frame_Shift_Del p.Y206* 0.48 TCGA-HU-A4GF-01 3 38648264 38648264 C T SCN5A Missense_Mutation p.E346K 0.55 tolerated(0.3) benign(0.005) TCGA-HU-A4GF-01 3 48697258 48697258 C T CELSR3 Missense_Mutation p.G937D 0.24 deleterious(0) probably_damaging(1) TCGA-HU-A4GF-01 3 49936308 49936308 C G MST1R Missense_Mutation p.G514R 0.07 deleterious(0) probably_damaging(0.997) TCGA-HU-A4GF-01 3 53220186 53220186 C T PRKCD Silent p.L364L 0.39 TCGA-HU-A4GF-01 3 69236960 69236960 G A FRMD4B Missense_Mutation p.S627L 0.33 deleterious(0.03) benign(0.017) TCGA-HU-A4GF-01 4 126412322 126412324 CTC - FAT4 In_Frame_Del p.P4784del 0.39 TCGA-HU-A4GF-01 4 146460992 146460992 A G SMAD1 Missense_Mutation p.Y146C 0.33 tolerated(0.14) benign(0.008) TCGA-HU-A4GF-01 4 177632778 177632778 A T VEGFC Silent p.S193S 0.26 TCGA-HU-A4GF-01 5 11411765 11411765 C T CTNND2 Splice_Site p.X108_splice 0.11 TCGA-HU-A4GF-01 5 140229141 140229141 C T PCDHA9 Missense_Mutation p.T354M 0.25 deleterious_low_confidence(0) benign(0.336) TCGA-HU-A4GF-01 5 140237415 140237415 C T PCDHA10 Silent p.R594R 0.19 TCGA-HU-A4GF-01 5 140532152 140532152 T G PCDHB6 Missense_Mutation p.F772V 0.33 tolerated_low_confidence(0.13) benign(0.007) TCGA-HU-A4GF-01 5 147491381 147491381 T C SPINK5 Silent p.C581C 0.32 TCGA-HU-A4GF-01 5 170863108 170863108 C G FGF18 Silent p.A27A 0.20 TCGA-HU-A4GF-01 5 1879711 1879711 C T IRX4 Missense_Mutation p.A215T 0.15 tolerated(0.23) benign(0.002) TCGA-HU-A4GF-01 5 36686466 36686466 G A SLC1A3 3'UTR 0.12 TCGA-HU-A4GF-01 5 37061100 37061100 A G NIPBL Missense_Mutation p.I2614V 0.19 tolerated(0.07) benign(0.438) TCGA-HU-A4GF-01 5 43298983 43298983 G A HMGCS1 Nonsense_Mutation p.Q29* 0.20 TCGA-HU-A4GF-01 5 9063172 9063172 G A SEMA5A Missense_Mutation p.T782M 0.68 tolerated(0.11) benign(0.053) TCGA-HU-A4GF-01 6 155632370 155632373 AGCG - TFB1M Frame_Shift_Del p.A79Nfs*26 0.32 TCGA-HU-A4GF-01 6 34256668 34256668 T A NUDT3 Missense_Mutation p.K127N 0.16 tolerated(0.1) benign(0.012) TCGA-HU-A4GF-01 6 54805876 54805876 T A FAM83B Missense_Mutation p.L703M 0.45 tolerated(0.23) benign(0.019) TCGA-HU-A4GF-01 6 6266873 6266873 A G F13A1 Silent p.A163A 0.24 TCGA-HU-A4GF-01 6 73830225 73830225 C A KCNQ5 Missense_Mutation p.A382E 0.18 deleterious(0) possibly_damaging(0.703) TCGA-HU-A4GF-01 6 74072894 74072894 C T KHDC3L Silent p.N82N 0.36 TCGA-HU-A4GF-01 6 90642102 90642102 C T BACH2 3'UTR 0.27 TCGA-HU-A4GF-01 7 100349524 100349524 C A ZAN Missense_Mutation p.T599N 0.16 probably_damaging(0.983) TCGA-HU-A4GF-01 7 1009058 1009058 C T COX19 Missense_Mutation p.G77R 0.04 deleterious(0) probably_damaging(0.995) TCGA-HU-A4GF-01 7 112407799 112407799 C G TMEM168 Missense_Mutation p.G516A 0.05 deleterious(0.02) probably_damaging(0.963) TCGA-HU-A4GF-01 7 135304611 135304611 T C NUP205 Silent p.P1435P 0.16 TCGA-HU-A4GF-01 7 138487711 138487711 C T TMEM213 Missense_Mutation p.A74V 0.07 deleterious(0) possibly_damaging(0.695) TCGA-HU-A4GF-01 7 149524040 149524040 A G SSPO RNA 0.22 TCGA-HU-A4GF-01 7 27839705 27839705 A G TAX1BP1 Missense_Mutation p.Y587C 0.12 deleterious(0.01) possibly_damaging(0.873) TCGA-HU-A4GF-01 7 38398119 38398119 C A TRGV3 Missense_Mutation p.W116C 0.17 deleterious(0) probably_damaging(1) TCGA-HU-A4GF-01 7 44193050 44193050 G A GCK Silent p.L21L 0.06 TCGA-HU-A4GF-01 7 4830888 4830888 T C AP5Z1 Missense_Mutation p.F766L 0.11 tolerated(0.2) benign(0.053) TCGA-HU-A4GF-01 7 86415918 86415918 C T GRM3 Silent p.R270R 0.21 TCGA-HU-A4GF-01 7 87808288 87808288 A T ADAM22 Missense_Mutation p.D780V 0.24 deleterious_low_confidence(0.03) probably_damaging(0.92) TCGA-HU-A4GF-01 7 99359762 99359762 C T CYP3A4 Silent p.G385G 0.21 TCGA-HU-A4GF-01 7 99710533 99710533 T C TAF6 Silent p.K191K 0.29 TCGA-HU-A4GF-01 8 101203630 101203630 G A SPAG1 Missense_Mutation p.R282H 0.19 deleterious(0.02) probably_damaging(0.994) TCGA-HU-A4GF-01 8 110980822 110980822 C T KCNV1 Missense_Mutation p.R333H 0.20 deleterious(0) probably_damaging(0.947) TCGA-HU-A4GF-01 8 117657205 117657205 A G EIF3H 3'UTR 0.34 TCGA-HU-A4GF-01 8 16012654 16012654 C A MSR1 Splice_Site p.X273_splice 0.31 TCGA-HU-A4GF-01 8 2830805 2830805 G T CSMD1 Missense_Mutation p.F2919L 0.13 benign(0.002) TCGA-HU-A4GF-01 8 30648824 30648824 T C PPP2CB Missense_Mutation p.N249S 0.24 tolerated(0.41) benign(0.001) TCGA-HU-A4GF-01 8 41552776 41552776 C T ANK1 Missense_Mutation p.E1053K 0.30 deleterious(0) possibly_damaging(0.465) TCGA-HU-A4GF-01 8 42206594 42206594 C T POLB Missense_Mutation p.R83C 0.30 deleterious(0) possibly_damaging(0.71) TCGA-HU-A4GF-01 8 55370848 55370848 G A SOX17 Silent p.A50A 0.21 TCGA-HU-A4GF-01 8 68140335 68140335 T C ARFGEF1 Missense_Mutation p.M1152V 0.30 tolerated(0.22) benign(0.023) TCGA-HU-A4GF-01 8 68213553 68213553 T C ARFGEF1 Missense_Mutation p.N73S 0.29 tolerated(0.4) benign(0.001) TCGA-HU-A4GF-01 9 100126341 100126341 C T CCDC180 Missense_Mutation p.P1348L 0.28 tolerated(0.11) benign(0) TCGA-HU-A4GF-01 9 138438674 138438674 G A OBP2A Silent p.P41P 0.18 TCGA-HU-A4GF-01 9 140846795 140846795 T G CACNA1B Missense_Mutation p.F346V 0.23 deleterious(0) benign(0.152) TCGA-HU-A4GF-01 9 742406 742406 G A KANK1 Splice_Site p.X1299_splice 0.37 TCGA-HU-A4GF-01 9 87635235 87635235 T G NTRK2 Missense_Mutation p.F763V 0.31 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GF-01 X 128599895 128599895 T G SMARCA1 Missense_Mutation p.I915L 0.39 tolerated(0.31) benign(0.058) TCGA-HU-A4GF-01 X 24625971 24625971 C A PCYT1B Missense_Mutation p.R75S 0.18 deleterious(0) possibly_damaging(0.58) TCGA-HU-A4GF-01 X 27840119 27840119 A C MAGEB10 Missense_Mutation p.L232F 0.38 deleterious(0) probably_damaging(0.973) TCGA-HU-A4GF-01 X 3239183 3239183 T A MXRA5 Missense_Mutation p.S1515C 0.10 deleterious(0) possibly_damaging(0.613) TCGA-HU-A4GF-01 X 47306848 47306848 C T ZNF41 Missense_Mutation p.R774H 0.42 deleterious(0.04) benign(0) TCGA-HU-A4GF-01 X 70823751 70823751 C G ACRC Missense_Mutation p.N208K 0.36 unknown(0) TCGA-HU-A4GH-01 10 101716033 101716033 A T DNMBP Missense_Mutation p.S400T 0.11 tolerated_low_confidence(0.16) benign(0.003) TCGA-HU-A4GH-01 10 103916821 103916821 T G NOLC1 Missense_Mutation p.F56V 0.12 deleterious_low_confidence(0.01) probably_damaging(0.979) TCGA-HU-A4GH-01 10 105048263 105048263 T G INA Missense_Mutation p.L446R 0.08 tolerated(0.21) benign(0.137) TCGA-HU-A4GH-01 10 105807556 105807556 A T COL17A1 Missense_Mutation p.L759H 0.12 probably_damaging(0.979) TCGA-HU-A4GH-01 10 112269879 112269879 T G DUSP5 Missense_Mutation p.F284V 0.13 tolerated(1) benign(0.001) TCGA-HU-A4GH-01 10 123246922 123246922 T G FGFR2 Missense_Mutation p.K669T 0.19 deleterious(0) possibly_damaging(0.904) TCGA-HU-A4GH-01 10 123976324 123976324 A C TACC2 Missense_Mutation p.K2509N 0.16 probably_damaging(0.978) TCGA-HU-A4GH-01 10 14867563 14867563 A G CDNF Silent p.T100T 0.30 TCGA-HU-A4GH-01 10 21129726 21129726 A C NEBL Missense_Mutation p.L427R 0.11 tolerated(0.19) possibly_damaging(0.701) TCGA-HU-A4GH-01 10 21805290 21805290 C T SKIDA1 Missense_Mutation p.A488T 0.15 tolerated_low_confidence(0.09) unknown(0) TCGA-HU-A4GH-01 10 21805305 21805305 A C SKIDA1 Missense_Mutation p.F483V 0.13 deleterious_low_confidence(0) unknown(0) TCGA-HU-A4GH-01 10 43089768 43089768 C G ZNF33B Missense_Mutation p.E210D 0.09 deleterious(0.02) benign(0.06) TCGA-HU-A4GH-01 10 5040881 5040881 T C AKR1C2 Missense_Mutation p.N169S 0.18 deleterious(0.03) probably_damaging(0.999) TCGA-HU-A4GH-01 10 5242195 5242195 T G AKR1C4 Missense_Mutation p.F46V 0.05 deleterious(0) probably_damaging(0.997) TCGA-HU-A4GH-01 10 55780134 55780134 T G PCDH15 Silent p.R857R 0.20 TCGA-HU-A4GH-01 10 60037071 60037071 A G CISD1 Missense_Mutation p.R76G 0.46 deleterious(0) probably_damaging(0.928) TCGA-HU-A4GH-01 10 61815524 61815524 T G ANK3 Missense_Mutation p.K4319N 0.08 probably_damaging(0.977) TCGA-HU-A4GH-01 10 6528061 6528061 T G PRKCQ Missense_Mutation p.N279T 0.26 deleterious(0) probably_damaging(0.993) TCGA-HU-A4GH-01 10 6552963 6552963 T A PRKCQ Missense_Mutation p.E104D 0.13 tolerated(0.4) benign(0.005) TCGA-HU-A4GH-01 10 70406019 70406019 A C TET1 Missense_Mutation p.K1178T 0.15 tolerated(0.13) benign(0.001) TCGA-HU-A4GH-01 10 7212906 7212906 T G SFMBT2 Missense_Mutation p.K843T 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-HU-A4GH-01 10 72307084 72307084 T C PALD1 Missense_Mutation p.L715P 0.10 deleterious(0) possibly_damaging(0.847) TCGA-HU-A4GH-01 10 72360127 72360127 A C PRF1 Missense_Mutation p.F178V 0.07 deleterious(0.02) benign(0.063) TCGA-HU-A4GH-01 10 72637083 72637083 A T SGPL1 Missense_Mutation p.K566N 0.10 tolerated_low_confidence(0.08) benign(0.097) TCGA-HU-A4GH-01 10 73082659 73082659 T G SLC29A3 Missense_Mutation p.F50V 0.22 deleterious(0.03) benign(0.15) TCGA-HU-A4GH-01 10 78778771 78778771 C T KCNMA1 Missense_Mutation p.R672K 0.19 deleterious(0.01) benign(0.29) TCGA-HU-A4GH-01 10 81317142 81317142 A G SFTPA2 Silent p.T190T 0.10 TCGA-HU-A4GH-01 10 87373285 87373285 T A GRID1 Missense_Mutation p.K827M 0.31 deleterious(0.03) possibly_damaging(0.8) TCGA-HU-A4GH-01 10 87484327 87484327 T G GRID1 Missense_Mutation p.K547T 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-HU-A4GH-01 10 88769678 88769678 A C RP11-96C23.10 RNA 0.11 TCGA-HU-A4GH-01 10 93257892 93257892 T G HECTD2 Missense_Mutation p.L570V 0.16 deleterious(0) probably_damaging(0.987) TCGA-HU-A4GH-01 10 94268496 94268496 A C IDE Missense_Mutation p.L350R 0.15 deleterious(0) probably_damaging(1) TCGA-HU-A4GH-01 10 94714421 94714421 A C EXOC6 Missense_Mutation p.T521P 0.11 deleterious(0.01) probably_damaging(0.992) TCGA-HU-A4GH-01 10 99150259 99150259 T A RRP12 Missense_Mutation p.D225V 0.12 deleterious(0) benign(0.241) TCGA-HU-A4GH-01 11 103049955 103049955 T C DYNC2H1 Missense_Mutation p.F2114L 0.09 benign(0.011) TCGA-HU-A4GH-01 11 103070185 103070185 T G DYNC2H1 Missense_Mutation p.F2690V 0.18 probably_damaging(0.999) TCGA-HU-A4GH-01 11 105845279 105845279 T G GRIA4 Intron 0.39 TCGA-HU-A4GH-01 11 113857523 113857523 T A HTR3A Missense_Mutation p.L336H 0.29 tolerated_low_confidence(0.55) benign(0.065) TCGA-HU-A4GH-01 11 117097908 117097908 C T PCSK7 Missense_Mutation p.C245Y 0.07 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GH-01 11 117162426 117162426 A T BACE1 Splice_Site p.X314_splice 0.11 TCGA-HU-A4GH-01 11 118343628 118343628 T G KMT2A Missense_Mutation p.L585R 0.07 probably_damaging(0.991) TCGA-HU-A4GH-01 11 120673451 120673451 C T GRIK4 Silent p.S44S 0.43 TCGA-HU-A4GH-01 11 120707510 120707510 T G GRIK4 Missense_Mutation p.L234R 0.27 deleterious(0.02) possibly_damaging(0.855) TCGA-HU-A4GH-01 11 122653921 122653921 T A UBASH3B Silent p.A254A 0.08 TCGA-HU-A4GH-01 11 122775942 122775942 T G C11orf63 Intron 0.20 TCGA-HU-A4GH-01 11 123624601 123624601 A C OR6X1 Missense_Mutation p.L209R 0.32 deleterious(0) probably_damaging(0.986) TCGA-HU-A4GH-01 11 124413447 124413447 G A OR8B12 Missense_Mutation p.T35M 0.29 tolerated_low_confidence(0.64) benign(0.001) TCGA-HU-A4GH-01 11 124793853 124793853 T G HEPACAM Missense_Mutation p.S161R 0.11 tolerated(0.12) probably_damaging(0.98) TCGA-HU-A4GH-01 11 124794827 124794827 T G HEPACAM Missense_Mutation p.K75T 0.22 deleterious(0.01) probably_damaging(0.994) TCGA-HU-A4GH-01 11 126120444 126120444 A G FAM118B Missense_Mutation p.Y128C 0.38 tolerated(0.11) probably_damaging(0.979) TCGA-HU-A4GH-01 11 133715312 133715312 A C SPATA19 Missense_Mutation p.I10M 0.10 deleterious(0) possibly_damaging(0.844) TCGA-HU-A4GH-01 11 13381932 13381932 T G ARNTL Silent p.T140T 0.07 TCGA-HU-A4GH-01 11 19077439 19077439 A T MRGPRX2 Missense_Mutation p.L171I 0.36 deleterious(0.04) possibly_damaging(0.596) TCGA-HU-A4GH-01 11 19164601 19164601 T C ZDHHC13 Missense_Mutation p.L35P 0.24 tolerated(0.3) benign(0.004) TCGA-HU-A4GH-01 11 20122681 20122681 T - NAV2 Frame_Shift_Del p.I2187Sfs*46 0.25 TCGA-HU-A4GH-01 11 21592445 21592445 G A NELL1 Missense_Mutation p.G706R 0.09 deleterious(0) probably_damaging(1) TCGA-HU-A4GH-01 11 294177 294177 T G ATHL1 Missense_Mutation p.F597V 0.10 deleterious(0) probably_damaging(0.982) TCGA-HU-A4GH-01 11 34988225 34988225 A G PDHX Missense_Mutation p.K227R 0.05 tolerated(0.07) benign(0.005) TCGA-HU-A4GH-01 11 3733646 3733646 C A NUP98 Intron 0.33 TCGA-HU-A4GH-01 11 3838667 3838667 G A PGAP2 Missense_Mutation p.V84I 0.08 tolerated(0.12) benign(0.038) TCGA-HU-A4GH-01 11 44104811 44104811 C G ACCS Missense_Mutation p.P402A 0.07 deleterious(0.01) probably_damaging(1) TCGA-HU-A4GH-01 11 44265716 44265716 A C EXT2 Missense_Mutation p.K712T 0.30 tolerated(0.07) benign(0.033) TCGA-HU-A4GH-01 11 45987083 45987083 A C PHF21A Missense_Mutation p.L259R 0.10 tolerated(0.12) probably_damaging(0.999) TCGA-HU-A4GH-01 11 46724676 46724676 A T ZNF408 Missense_Mutation p.S179C 0.12 deleterious(0.03) possibly_damaging(0.533) TCGA-HU-A4GH-01 11 46740791 46740791 G A F2 Silent p.A2A 0.19 TCGA-HU-A4GH-01 11 47464290 47464290 T G RAPSN Missense_Mutation p.K203T 0.07 deleterious(0) probably_damaging(0.974) TCGA-HU-A4GH-01 11 48267363 48267363 C A OR4X2 Missense_Mutation p.F236L 0.14 tolerated(0.08) benign(0) TCGA-HU-A4GH-01 11 48510658 48510658 T C OR4A47 Missense_Mutation p.F105S 0.25 deleterious_low_confidence(0.04) benign(0.082) TCGA-HU-A4GH-01 11 55135520 55135520 T G OR4A15 Missense_Mutation p.V54G 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.543) TCGA-HU-A4GH-01 11 55432732 55432732 T C OR4C6 Silent p.L30L 0.11 TCGA-HU-A4GH-01 11 57466855 57466857 AGA - ZDHHC5 In_Frame_Del p.E651del 0.47 TCGA-HU-A4GH-01 11 5878214 5878214 A C OR52E8 Missense_Mutation p.L240R 0.09 tolerated(0.06) benign(0.012) TCGA-HU-A4GH-01 11 59190129 59190129 T C OR5A2 Missense_Mutation p.T100A 0.10 tolerated(0.71) benign(0.004) TCGA-HU-A4GH-01 11 59344127 59344127 A C OSBP Missense_Mutation p.L783V 0.26 tolerated(0.47) benign(0.004) TCGA-HU-A4GH-01 11 59949127 59949127 T C MS4A6A Missense_Mutation p.E53G 0.10 tolerated(0.09) benign(0.047) TCGA-HU-A4GH-01 11 60561446 60561446 A C MS4A10 Missense_Mutation p.K121T 0.24 deleterious(0.02) probably_damaging(0.993) TCGA-HU-A4GH-01 11 6129691 6129691 T G OR56B4 Missense_Mutation p.L228R 0.24 deleterious(0) probably_damaging(0.981) TCGA-HU-A4GH-01 11 61959609 61959609 T C SCGB1D1 Missense_Mutation p.L46P 0.15 deleterious(0) probably_damaging(0.995) TCGA-HU-A4GH-01 11 62300884 62300884 T G AHNAK Missense_Mutation p.E335D 0.09 probably_damaging(0.967) TCGA-HU-A4GH-01 11 62749434 62749434 A C SLC22A6 Missense_Mutation p.I226S 0.13 tolerated(0.29) benign(0.014) TCGA-HU-A4GH-01 11 64502684 64502684 A C RASGRP2 Missense_Mutation p.F438V 0.20 deleterious(0) possibly_damaging(0.468) TCGA-HU-A4GH-01 11 64822016 64822016 A G NAALADL1 Silent p.S266S 0.15 TCGA-HU-A4GH-01 11 65146879 65146879 A C SLC25A45 Missense_Mutation p.F103V 0.09 tolerated(0.19) probably_damaging(0.973) TCGA-HU-A4GH-01 11 65714797 65714797 A G TSGA10IP RNA 0.29 TCGA-HU-A4GH-01 11 66190308 66190308 A T NPAS4 Missense_Mutation p.R198S 0.28 tolerated(0.26) benign(0.018) TCGA-HU-A4GH-01 11 66192045 66192045 T G NPAS4 Missense_Mutation p.F562V 0.07 deleterious(0.02) possibly_damaging(0.746) TCGA-HU-A4GH-01 11 6645019 6645019 C A DCHS1 Missense_Mutation p.D2630Y 0.12 deleterious(0) probably_damaging(1) TCGA-HU-A4GH-01 11 67287296 67287296 T C CABP2 Missense_Mutation p.D202G 0.05 deleterious(0) probably_damaging(1) TCGA-HU-A4GH-01 11 70218481 70218481 T G PPFIA1 Missense_Mutation p.V1009G 0.22 deleterious(0) probably_damaging(0.982) TCGA-HU-A4GH-01 11 70331991 70331991 T C SHANK2 Silent p.S1470S 0.11 TCGA-HU-A4GH-01 11 71715136 71715136 G A NUMA1 Missense_Mutation p.R2045C 0.27 probably_damaging(0.969) TCGA-HU-A4GH-01 11 73022308 73022308 A C ARHGEF17 Missense_Mutation p.E875D 0.09 tolerated_low_confidence(0.23) benign(0.003) TCGA-HU-A4GH-01 11 73131004 73131004 A T FAM168A Silent p.S64S 0.12 TCGA-HU-A4GH-01 11 73814511 73814511 A C C2CD3 Missense_Mutation p.L749V 0.20 tolerated(0.31) benign(0.168) TCGA-HU-A4GH-01 11 74168622 74168622 G A KCNE3 5'UTR 0.17 TCGA-HU-A4GH-01 11 8752501 8752501 G A ST5 Silent p.D112D 0.18 TCGA-HU-A4GH-01 11 89880599 89880599 A C NAALAD2 Missense_Mutation p.K99T 0.26 tolerated(0.28) benign(0.016) TCGA-HU-A4GH-01 11 92531144 92531144 A G FAT3 Silent p.A1655A 0.21 TCGA-HU-A4GH-01 11 92531514 92531514 A C FAT3 Missense_Mutation p.S1779R 0.43 probably_damaging(0.994) TCGA-HU-A4GH-01 11 9492969 9492969 T C ZNF143 Splice_Site p.X38_splice 0.09 TCGA-HU-A4GH-01 12 104100724 104100724 A G STAB2 Missense_Mutation p.E1384G 0.19 deleterious(0) possibly_damaging(0.791) TCGA-HU-A4GH-01 12 109926426 109926426 T G UBE3B Missense_Mutation p.L166R 0.07 deleterious(0) probably_damaging(0.936) TCGA-HU-A4GH-01 12 111779780 111779780 G A CUX2 Silent p.S1194S 0.32 TCGA-HU-A4GH-01 12 11338639 11338639 A C TAS2R42 Missense_Mutation p.L302R 0.33 deleterious(0) probably_damaging(0.99) TCGA-HU-A4GH-01 12 117705928 117705928 A C NOS1 Missense_Mutation p.L621V 0.07 deleterious(0) benign(0.017) TCGA-HU-A4GH-01 12 117723967 117723967 T G NOS1 Missense_Mutation p.K411T 0.10 deleterious(0) probably_damaging(0.969) TCGA-HU-A4GH-01 12 119960794 119960794 A C CCDC60 Missense_Mutation p.K364T 0.12 deleterious(0.04) possibly_damaging(0.56) TCGA-HU-A4GH-01 12 120597772 120597772 T G GCN1L1 Missense_Mutation p.N869T 0.12 benign(0.169) TCGA-HU-A4GH-01 12 120899957 120899957 A C SRSF9 Silent p.T177T 0.23 TCGA-HU-A4GH-01 12 123290807 123290807 T G CCDC62 Missense_Mutation p.L606V 0.27 tolerated(0.18) benign(0.167) TCGA-HU-A4GH-01 12 124885181 124885181 T C NCOR2 Missense_Mutation p.E560G 0.11 unknown(0) TCGA-HU-A4GH-01 12 129467525 129467525 G T GLT1D1 Nonsense_Mutation p.E231* 0.21 TCGA-HU-A4GH-01 12 131487375 131487375 A G GPR133 Intron 0.20 TCGA-HU-A4GH-01 12 1675940 1675940 T G FBXL14 Silent p.R411R 0.08 TCGA-HU-A4GH-01 12 22354967 22354967 T C ST8SIA1 Missense_Mutation p.Q197R 0.14 tolerated(0.36) possibly_damaging(0.513) TCGA-HU-A4GH-01 12 25261021 25261021 T G LRMP 3'UTR 0.12 TCGA-HU-A4GH-01 12 25702398 25702398 A G IFLTD1 Missense_Mutation p.S58P 0.32 deleterious(0.02) probably_damaging(0.979) TCGA-HU-A4GH-01 12 42858715 42858715 T C PRICKLE1 Missense_Mutation p.K374R 0.28 tolerated(0.09) benign(0.055) TCGA-HU-A4GH-01 12 49579658 49579658 T G TUBA1A Missense_Mutation p.K164T 0.12 deleterious_low_confidence(0.01) probably_damaging(0.991) TCGA-HU-A4GH-01 12 49993476 49993476 A G FAM186B Silent p.S649S 0.10 TCGA-HU-A4GH-01 12 50616140 50616140 C A LIMA1 Missense_Mutation p.R98S 0.05 deleterious(0.01) benign(0.094) TCGA-HU-A4GH-01 12 51138610 51138610 T G DIP2B Silent p.A1573A 0.12 TCGA-HU-A4GH-01 12 521068 521068 A C CCDC77 Missense_Mutation p.K65T 0.14 deleterious(0.01) probably_damaging(0.929) TCGA-HU-A4GH-01 12 52777521 52777521 T C KRT84 Missense_Mutation p.Q203R 0.29 tolerated(0.34) probably_damaging(0.992) TCGA-HU-A4GH-01 12 53068985 53068985 T G KRT1 Missense_Mutation p.T643P 0.14 deleterious_low_confidence(0) unknown(0) TCGA-HU-A4GH-01 12 53071158 53071158 T C KRT1 Missense_Mutation p.Q357R 0.10 deleterious(0.01) probably_damaging(0.927) TCGA-HU-A4GH-01 12 53203219 53203219 T G KRT4 Missense_Mutation p.K261T 0.25 deleterious(0.01) probably_damaging(0.928) TCGA-HU-A4GH-01 12 53428497 53428497 A C EIF4B Intron 0.09 TCGA-HU-A4GH-01 12 56398004 56398004 A C SUOX Missense_Mutation p.E277D 0.11 tolerated(0.25) benign(0.027) TCGA-HU-A4GH-01 12 57346625 57346625 T G RDH16 Missense_Mutation p.K241T 0.43 tolerated(0.2) benign(0.015) TCGA-HU-A4GH-01 12 58018700 58018700 T G SLC26A10 Missense_Mutation p.F427V 0.15 tolerated(0.07) probably_damaging(0.999) TCGA-HU-A4GH-01 12 6105331 6105331 T G VWF Missense_Mutation p.K1967T 0.19 tolerated(0.13) probably_damaging(0.913) TCGA-HU-A4GH-01 12 6128304 6128304 A C VWF Missense_Mutation p.L1427R 0.12 tolerated(0.33) probably_damaging(0.95) TCGA-HU-A4GH-01 12 62147518 62147518 A G FAM19A2 Missense_Mutation p.V90A 0.27 deleterious(0.01) possibly_damaging(0.732) TCGA-HU-A4GH-01 12 66152212 66152212 A C RPSAP52 RNA 0.17 TCGA-HU-A4GH-01 12 66718889 66718889 A C HELB Missense_Mutation p.T885P 0.46 deleterious(0) probably_damaging(0.989) TCGA-HU-A4GH-01 12 70049460 70049460 T C BEST3 Missense_Mutation p.S412G 0.24 tolerated(0.17) benign(0.004) TCGA-HU-A4GH-01 12 9268470 9268470 A G A2M 5'UTR 0.11 TCGA-HU-A4GH-01 12 99837566 99837566 A C ANKS1B Missense_Mutation p.V487G 0.12 deleterious(0) benign(0.051) TCGA-HU-A4GH-01 13 101833408 101833408 T C NALCN Intron 0.18 TCGA-HU-A4GH-01 13 110845208 110845208 A T COL4A1 Silent p.P478P 0.07 TCGA-HU-A4GH-01 13 111367991 111367991 T G ING1 Silent p.G67G 0.16 TCGA-HU-A4GH-01 13 112722352 112722352 A C SOX1 Missense_Mutation p.K127T 0.13 deleterious(0) probably_damaging(0.995) TCGA-HU-A4GH-01 13 113030765 113030765 T G SPACA7 Silent p.T22T 0.19 TCGA-HU-A4GH-01 13 115091308 115091308 A T CHAMP1 Missense_Mutation p.D664V 0.22 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GH-01 13 25352459 25352459 A C RNF17 Missense_Mutation p.K115T 0.10 deleterious_low_confidence(0.02) benign(0.102) TCGA-HU-A4GH-01 13 32352709 32352709 A C RXFP2 Missense_Mutation p.Q258H 0.38 tolerated(0.2) benign(0.001) TCGA-HU-A4GH-01 13 50235114 50235114 T A EBPL Missense_Mutation p.K204M 0.06 deleterious(0) possibly_damaging(0.471) TCGA-HU-A4GH-01 13 58206928 58206928 T C PCDH17 Missense_Mutation p.L83P 0.23 deleterious(0) probably_damaging(0.981) TCGA-HU-A4GH-01 14 100374049 100374049 A C EML1 Missense_Mutation p.E380D 0.15 tolerated(0.14) benign(0.258) TCGA-HU-A4GH-01 14 102476330 102476330 A G DYNC1H1 Missense_Mutation p.K2043R 0.08 benign(0.1) TCGA-HU-A4GH-01 14 102717178 102717178 G A MOK Silent p.S187S 0.10 TCGA-HU-A4GH-01 14 104641834 104641834 T C KIF26A Silent p.S903S 0.20 TCGA-HU-A4GH-01 14 105415965 105415965 T G AHNAK2 Missense_Mutation p.E1941D 0.10 benign(0.001) TCGA-HU-A4GH-01 14 105707653 105707653 T G BRF1 Missense_Mutation p.K215Q 0.09 deleterious(0.03) probably_damaging(0.964) TCGA-HU-A4GH-01 14 20404286 20404286 T G OR4K1 Missense_Mutation p.L154R 0.20 deleterious(0) probably_damaging(0.991) TCGA-HU-A4GH-01 14 20586502 20586502 T C OR4K17 Silent p.L313L 0.22 TCGA-HU-A4GH-01 14 20666008 20666008 A C OR11G2 Missense_Mutation p.T172P 0.28 deleterious(0) possibly_damaging(0.616) TCGA-HU-A4GH-01 14 20851710 20851710 A G TEP1 Silent p.A1268A 0.11 TCGA-HU-A4GH-01 14 22631211 22631211 A T TRAV29DV5 5'UTR 0.30 TCGA-HU-A4GH-01 14 23886389 23886389 A C MYH7 Missense_Mutation p.F1498V 0.09 tolerated(0.33) benign(0.025) TCGA-HU-A4GH-01 14 24800432 24800432 T A ADCY4 Missense_Mutation p.K267M 0.20 deleterious(0.01) probably_damaging(0.991) TCGA-HU-A4GH-01 14 24885594 24885594 T C NYNRIN Missense_Mutation p.S1547P 0.21 tolerated(0.14) benign(0.355) TCGA-HU-A4GH-01 14 59835618 59835618 C T DAAM1 3'UTR 0.90 TCGA-HU-A4GH-01 14 61442562 61442562 A C TRMT5 Missense_Mutation p.F359V 0.15 deleterious(0) probably_damaging(0.966) TCGA-HU-A4GH-01 14 68256223 68256223 T G ZFYVE26 Missense_Mutation p.S950R 0.28 tolerated(0.06) benign(0.073) TCGA-HU-A4GH-01 14 74988674 74988674 A G LTBP2 Missense_Mutation p.S910P 0.15 deleterious(0.02) possibly_damaging(0.861) TCGA-HU-A4GH-01 14 81574972 81574972 A C TSHR Intron 0.11 TCGA-HU-A4GH-01 14 89305909 89305909 A C TTC8 Missense_Mutation p.Q86H 0.16 deleterious(0.04) probably_damaging(0.989) TCGA-HU-A4GH-01 14 90499478 90499478 A C TDP1 Missense_Mutation p.K558T 0.33 tolerated(0.07) benign(0.082) TCGA-HU-A4GH-01 14 90764715 90764715 A G NRDE2 Missense_Mutation p.F519L 0.11 deleterious(0.02) benign(0.186) TCGA-HU-A4GH-01 14 94708198 94708198 A C PPP4R4 Missense_Mutation p.Q350H 0.14 tolerated(0.34) benign(0.001) TCGA-HU-A4GH-01 15 101589862 101589862 G A LRRK1 Missense_Mutation p.D1105N 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-HU-A4GH-01 15 23261106 23261106 C G GOLGA8I Missense_Mutation p.Q261E 0.18 tolerated(0.57) benign(0.131) TCGA-HU-A4GH-01 15 24923394 24923394 A C NPAP1 Missense_Mutation p.S794R 0.06 tolerated_low_confidence(0.71) possibly_damaging(0.504) TCGA-HU-A4GH-01 15 25488810 25488810 A C SNORD115-40 RNA 0.11 TCGA-HU-A4GH-01 15 27114462 27114462 A G GABRA5 Missense_Mutation p.N23D 0.24 tolerated_low_confidence(0.25) benign(0.006) TCGA-HU-A4GH-01 15 31339318 31339318 T G TRPM1 Missense_Mutation p.K604T 0.07 deleterious(0.03) possibly_damaging(0.722) TCGA-HU-A4GH-01 15 34395727 34395727 A C PGBD4 Missense_Mutation p.N332T 0.27 tolerated(0.06) probably_damaging(0.997) TCGA-HU-A4GH-01 15 39885624 39885624 T G THBS1 Missense_Mutation p.F1008V 0.07 deleterious(0) probably_damaging(1) TCGA-HU-A4GH-01 15 41796355 41796355 A C LTK Missense_Mutation p.L812V 0.15 deleterious_low_confidence(0.02) possibly_damaging(0.675) TCGA-HU-A4GH-01 15 41796356 41796356 A T LTK Silent p.S811S 0.15 TCGA-HU-A4GH-01 15 42156167 42156167 T G SPTBN5 Missense_Mutation p.K2325T 0.07 possibly_damaging(0.809) TCGA-HU-A4GH-01 15 42193147 42193147 T C EHD4 Missense_Mutation p.E441G 0.12 tolerated(0.18) possibly_damaging(0.559) TCGA-HU-A4GH-01 15 42373220 42373220 A G PLA2G4D Missense_Mutation p.F357L 0.10 tolerated(0.41) benign(0.003) TCGA-HU-A4GH-01 15 43484948 43484948 G T CCNDBP1 Missense_Mutation p.D290Y 0.29 deleterious(0) probably_damaging(0.974) TCGA-HU-A4GH-01 15 43653262 43653262 C T ZSCAN29 3'UTR 0.05 TCGA-HU-A4GH-01 15 50152626 50152626 C T ATP8B4 Missense_Mutation p.S1115N 0.06 tolerated(0.49) benign(0.001) TCGA-HU-A4GH-01 15 50902127 50902127 A G TRPM7 Missense_Mutation p.I771T 0.09 deleterious(0) possibly_damaging(0.572) TCGA-HU-A4GH-01 15 51857327 51857327 A C DMXL2 Missense_Mutation p.F108V 0.26 tolerated(0.73) possibly_damaging(0.702) TCGA-HU-A4GH-01 15 52667649 52667649 T G MYO5A Missense_Mutation p.K810T 0.07 tolerated(0.3) benign(0.005) TCGA-HU-A4GH-01 15 54307825 54307825 T A UNC13C Missense_Mutation p.S909T 0.15 tolerated_low_confidence(0.33) benign(0.003) TCGA-HU-A4GH-01 15 57743743 57743743 A C CGNL1 Missense_Mutation p.S617R 0.10 tolerated(0.47) benign(0.017) TCGA-HU-A4GH-01 15 63433967 63433967 A T LACTB Missense_Mutation p.K536M 0.09 deleterious(0.02) benign(0.411) TCGA-HU-A4GH-01 15 63966564 63966564 T C HERC1 Missense_Mutation p.Q2608R 0.26 benign(0.101) TCGA-HU-A4GH-01 15 63970195 63970195 G A HERC1 Silent p.L2307L 0.11 TCGA-HU-A4GH-01 15 65412073 65412073 T G PDCD7 Missense_Mutation p.K410T 0.05 tolerated(0.28) probably_damaging(0.945) TCGA-HU-A4GH-01 15 67664882 67664882 A C IQCH Missense_Mutation p.K396T 0.07 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GH-01 15 75654237 75654237 G C MAN2C1 Missense_Mutation p.Q354E 0.07 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GH-01 15 76430105 76430105 A C C15orf27 Missense_Mutation p.E32D 0.26 tolerated_low_confidence(0.16) probably_damaging(0.99) TCGA-HU-A4GH-01 15 81430438 81430438 T G C15orf26 Missense_Mutation p.F147V 0.43 deleterious(0) probably_damaging(0.994) TCGA-HU-A4GH-01 15 81644103 81644103 A C TMC3 Missense_Mutation p.F339V 0.36 deleterious(0) possibly_damaging(0.696) TCGA-HU-A4GH-01 15 90126064 90126064 A G TICRR Missense_Mutation p.S268G 0.09 tolerated(0.19) benign(0.023) TCGA-HU-A4GH-01 15 90143840 90143840 A C TICRR Missense_Mutation p.S693R 0.20 tolerated(0.06) benign(0.142) TCGA-HU-A4GH-01 15 90996483 90996483 A G IQGAP1 Silent p.S482S 0.10 TCGA-HU-A4GH-01 15 91017188 91017188 T G IQGAP1 Missense_Mutation p.F832V 0.06 deleterious(0) benign(0.334) TCGA-HU-A4GH-01 15 91358484 91358484 T G BLM Missense_Mutation p.L1410R 0.07 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GH-01 15 91524205 91524205 C T PRC1 Missense_Mutation p.R244Q 0.27 tolerated(0.7) benign(0.004) TCGA-HU-A4GH-01 15 91573220 91573220 A C AC068831.10 Intron 0.16 TCGA-HU-A4GH-01 15 92663821 92663821 A G SLCO3A1 Missense_Mutation p.Q379R 0.27 deleterious(0) possibly_damaging(0.615) TCGA-HU-A4GH-01 16 1400202 1400202 T G TSR3 Missense_Mutation p.K187T 0.21 deleterious(0.02) benign(0.316) TCGA-HU-A4GH-01 16 17228554 17228554 T G XYLT1 Missense_Mutation p.E601D 0.09 deleterious(0) possibly_damaging(0.816) TCGA-HU-A4GH-01 16 18597208 18597208 T G ABCC6P1 RNA 0.29 TCGA-HU-A4GH-01 16 20792440 20792440 T G ACSM3 Silent p.T309T 0.41 TCGA-HU-A4GH-01 16 2159146 2159146 A C PKD1 Missense_Mutation p.F2008V 0.23 probably_damaging(0.99) TCGA-HU-A4GH-01 16 21739716 21739716 A G OTOA Missense_Mutation p.K724R 0.08 tolerated(0.19) benign(0.085) TCGA-HU-A4GH-01 16 2290019 2290019 C A ECI1 Silent p.L290L 0.13 TCGA-HU-A4GH-01 16 23578341 23578341 A C UBFD1 Missense_Mutation p.K257T 0.33 deleterious(0) probably_damaging(0.997) TCGA-HU-A4GH-01 16 2817433 2817433 A C SRRM2 Missense_Mutation p.T2302P 0.07 probably_damaging(0.997) TCGA-HU-A4GH-01 16 28905544 28905544 T G ATP2A1 Silent p.T388T 0.65 TCGA-HU-A4GH-01 16 29990301 29990301 A C TAOK2 Missense_Mutation p.K120T 0.13 deleterious(0) possibly_damaging(0.773) TCGA-HU-A4GH-01 16 30002181 30002181 A G TAOK2 3'Flank 0.15 TCGA-HU-A4GH-01 16 3074312 3074312 A T THOC6 5'UTR 0.11 TCGA-HU-A4GH-01 16 31121524 31121524 A T BCKDK Splice_Site p.X142_splice 0.12 TCGA-HU-A4GH-01 16 31374579 31374579 A C ITGAX Missense_Mutation p.N532H 0.10 deleterious(0) probably_damaging(0.963) TCGA-HU-A4GH-01 16 3727537 3727537 T G TRAP1 Silent p.A222A 0.23 TCGA-HU-A4GH-01 16 48174827 48174827 A C ABCC12 Missense_Mutation p.I143S 0.38 deleterious(0) benign(0.251) TCGA-HU-A4GH-01 16 50750503 50750503 G A NOD2 Missense_Mutation p.R823H 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-HU-A4GH-01 16 51175945 51175945 T G SALL1 Missense_Mutation p.K63T 0.29 tolerated(0.06) probably_damaging(0.997) TCGA-HU-A4GH-01 16 57800863 57800863 T A KIFC3 Missense_Mutation p.N418I 0.28 deleterious(0) possibly_damaging(0.759) TCGA-HU-A4GH-01 16 65005898 65005898 T C CDH11 Missense_Mutation p.K487R 0.64 deleterious(0.03) benign(0.001) TCGA-HU-A4GH-01 16 66600390 66600390 C T CMTM1 5'UTR 0.65 TCGA-HU-A4GH-01 16 68288856 68288856 T G PLA2G15 Missense_Mutation p.F107V 0.26 tolerated(0.16) benign(0.216) TCGA-HU-A4GH-01 16 70841438 70841438 A C HYDIN 3'UTR 0.20 TCGA-HU-A4GH-01 16 71101268 71101268 T A HYDIN Missense_Mutation p.Q667L 0.35 benign(0.116) TCGA-HU-A4GH-01 16 71606172 71606172 T G TAT Missense_Mutation p.K208T 0.20 tolerated(0.07) benign(0.148) TCGA-HU-A4GH-01 16 83711957 83711957 T G CDH13 Missense_Mutation p.F524V 0.16 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GH-01 17 10312755 10312755 A C MYH8 Missense_Mutation p.F580V 0.18 deleterious(0) possibly_damaging(0.903) TCGA-HU-A4GH-01 17 10399818 10399818 A C MYH1 Missense_Mutation p.L1569V 0.37 deleterious(0.01) benign(0.206) TCGA-HU-A4GH-01 17 10430318 10430318 T C MYH2 Silent p.R1309R 0.21 TCGA-HU-A4GH-01 17 10446197 10446197 A C MYH2 Missense_Mutation p.L300R 0.19 deleterious(0) probably_damaging(0.982) TCGA-HU-A4GH-01 17 10543950 10543950 T G MYH3 Missense_Mutation p.K740T 0.23 deleterious(0) benign(0.196) TCGA-HU-A4GH-01 17 11827151 11827151 T G DNAH9 Missense_Mutation p.F3924V 0.12 benign(0.021) TCGA-HU-A4GH-01 17 16852058 16852058 T C TNFRSF13B Missense_Mutation p.S147G 0.11 tolerated(1) benign(0) TCGA-HU-A4GH-01 17 18651282 18651282 T G FBXW10 Missense_Mutation p.C178W 0.27 tolerated(0.17) benign(0) TCGA-HU-A4GH-01 17 19705149 19705149 T C ULK2 Missense_Mutation p.Q461R 0.09 tolerated(0.53) benign(0.089) TCGA-HU-A4GH-01 17 26943707 26943707 A T KIAA0100 Missense_Mutation p.F2029Y 0.06 tolerated(0.13) probably_damaging(0.982) TCGA-HU-A4GH-01 17 29665018 29665018 A C NF1 Intron 0.10 TCGA-HU-A4GH-01 17 3336511 3336511 A C OR1E2 Missense_Mutation p.F209V 0.19 deleterious(0.02) benign(0.098) TCGA-HU-A4GH-01 17 34416541 34416541 T G CCL3 Missense_Mutation p.K59T 0.19 deleterious(0) benign(0.292) TCGA-HU-A4GH-01 17 36708201 36708201 A C SRCIN1 Missense_Mutation p.L883R 0.19 tolerated(0.36) benign(0.029) TCGA-HU-A4GH-01 17 37186565 37186565 A C CTD-2206N4.2 5'Flank 0.25 TCGA-HU-A4GH-01 17 37187986 37187986 T C CTD-2206N4.2 5'Flank 0.14 TCGA-HU-A4GH-01 17 37667858 37667858 C T CDK12 Missense_Mutation p.P915S 0.47 probably_damaging(1) TCGA-HU-A4GH-01 17 38130640 38130640 T G GSDMA Missense_Mutation p.L289R 0.22 deleterious(0) probably_damaging(0.995) TCGA-HU-A4GH-01 17 38816273 38816273 T C KRT222 Missense_Mutation p.T138A 0.06 deleterious(0.03) benign(0.136) TCGA-HU-A4GH-01 17 39537321 39537321 T G KRT34 Missense_Mutation p.K234T 0.11 tolerated(0.06) possibly_damaging(0.772) TCGA-HU-A4GH-01 17 39987098 39987098 T C NT5C3B Missense_Mutation p.K120R 0.30 tolerated(0.21) benign(0.112) TCGA-HU-A4GH-01 17 40257153 40257153 T C DHX58 Silent p.Q428Q 0.26 TCGA-HU-A4GH-01 17 40314288 40314288 T G KCNH4 Missense_Mutation p.K879T 0.07 tolerated(0.61) benign(0.403) TCGA-HU-A4GH-01 17 40936492 40936492 C T WNK4 Silent p.A355A 0.38 TCGA-HU-A4GH-01 17 41926086 41926086 A C CD300LG Missense_Mutation p.E68D 0.23 tolerated(0.1) benign(0.005) TCGA-HU-A4GH-01 17 42809588 42809588 C T DBF4B Silent p.L171L 0.37 TCGA-HU-A4GH-01 17 4461803 4461803 G T GGT6 Missense_Mutation p.S330Y 0.20 tolerated(0.08) possibly_damaging(0.876) TCGA-HU-A4GH-01 17 46620515 46620515 G C HOXB2 Missense_Mutation p.S329C 0.11 deleterious(0.05) probably_damaging(0.996) TCGA-HU-A4GH-01 17 49048213 49048213 T C SPAG9 Silent p.Q1235Q 0.24 TCGA-HU-A4GH-01 17 49281253 49281253 T C MBTD1 Missense_Mutation p.E213G 0.11 tolerated(0.36) benign(0.011) TCGA-HU-A4GH-01 17 49710922 49710922 G T CA10 Missense_Mutation p.N293K 0.18 tolerated(0.41) benign(0.339) TCGA-HU-A4GH-01 17 49710923 49710923 T G CA10 Missense_Mutation p.N293T 0.18 tolerated(0.54) benign(0.315) TCGA-HU-A4GH-01 17 53798348 53798348 T G TMEM100 Missense_Mutation p.E28D 0.26 tolerated(0.58) benign(0.016) TCGA-HU-A4GH-01 17 54535229 54535229 T A ANKFN1 Silent p.S485S 0.28 TCGA-HU-A4GH-01 17 56281627 56281627 A T EPX Missense_Mutation p.K664M 0.16 tolerated(0.13) benign(0.016) TCGA-HU-A4GH-01 17 57033078 57033078 T C PPM1E Missense_Mutation p.L178P 0.18 deleterious(0.01) probably_damaging(0.997) TCGA-HU-A4GH-01 17 58288813 58288813 T C USP32 Missense_Mutation p.S748G 0.09 tolerated(0.25) probably_damaging(0.977) TCGA-HU-A4GH-01 17 60814840 60814840 A C MARCH10 Intron 0.18 TCGA-HU-A4GH-01 17 70643739 70643739 T C SLC39A11 Missense_Mutation p.D338G 0.10 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GH-01 17 7133690 7133690 T C DVL2 Silent p.A108A 0.16 TCGA-HU-A4GH-01 17 7214775 7214775 A C EIF5A Missense_Mutation p.K156T 0.08 tolerated(0.15) probably_damaging(0.913) TCGA-HU-A4GH-01 17 72218654 72218654 G A TTYH2 Missense_Mutation p.V54I 0.28 tolerated(0.56) benign(0.006) TCGA-HU-A4GH-01 17 72539080 72539080 T G CD300C Silent p.S149S 0.10 TCGA-HU-A4GH-01 17 72588570 72588570 T G C17orf77 Missense_Mutation p.F129V 0.10 deleterious_low_confidence(0) possibly_damaging(0.504) TCGA-HU-A4GH-01 17 73699940 73699940 G A SAP30BP Splice_Site p.X201_splice 0.26 TCGA-HU-A4GH-01 17 73751203 73751203 T C ITGB4 Intron 0.10 TCGA-HU-A4GH-01 17 73805920 73805920 T C UNK Missense_Mutation p.F62L 0.09 deleterious(0.03) probably_damaging(0.977) TCGA-HU-A4GH-01 17 74391894 74391894 T C UBE2O Missense_Mutation p.K953R 0.17 tolerated(0.1) benign(0.005) TCGA-HU-A4GH-01 17 7534049 7534049 T G SHBG Missense_Mutation p.F85L 0.09 tolerated(0.15) benign(0.282) TCGA-HU-A4GH-01 17 7578446 7578446 T A TP53 Missense_Mutation p.I162F 0.68 deleterious(0) probably_damaging(0.94) TCGA-HU-A4GH-01 17 78055422 78055422 A G CCDC40 Missense_Mutation p.K547R 0.06 tolerated(0.21) benign(0.02) TCGA-HU-A4GH-01 17 78293289 78293289 G A RNF213 Intron 0.07 TCGA-HU-A4GH-01 17 79612482 79612482 G A TSPAN10 Silent p.A167A 0.50 TCGA-HU-A4GH-01 17 79612483 79612483 G T TSPAN10 Missense_Mutation p.G168W 0.27 deleterious(0) possibly_damaging(0.747) TCGA-HU-A4GH-01 17 79650891 79650891 T C ARL16 5'UTR 0.11 TCGA-HU-A4GH-01 17 79804384 79804384 T C P4HB Missense_Mutation p.K326R 0.10 deleterious(0.04) probably_damaging(0.913) TCGA-HU-A4GH-01 17 79991331 79991331 C T RAC3 Missense_Mutation p.R102W 0.13 deleterious_low_confidence(0) possibly_damaging(0.879) TCGA-HU-A4GH-01 17 8132666 8132666 A C CTC1 Missense_Mutation p.L1037R 0.10 deleterious(0) probably_damaging(0.992) TCGA-HU-A4GH-01 17 8526317 8526317 T G MYH10 Missense_Mutation p.K83T 0.38 probably_damaging(0.997) TCGA-HU-A4GH-01 18 13116434 13116434 C T CEP192 Missense_Mutation p.P2450S 0.08 deleterious(0.01) probably_damaging(1) TCGA-HU-A4GH-01 18 19997778 19997778 T G CTAGE1 5'UTR 0.30 TCGA-HU-A4GH-01 18 21099083 21099083 A T C18orf8 Missense_Mutation p.K265M 0.23 deleterious(0) probably_damaging(0.948) TCGA-HU-A4GH-01 18 21343437 21343437 T G LAMA3 Missense_Mutation p.L378V 0.22 probably_damaging(0.955) TCGA-HU-A4GH-01 18 2718418 2718418 A C SMCHD1 Missense_Mutation p.K815T 0.24 deleterious(0.01) possibly_damaging(0.802) TCGA-HU-A4GH-01 18 2892320 2892320 A C EMILIN2 Missense_Mutation p.K732T 0.07 deleterious(0.02) possibly_damaging(0.776) TCGA-HU-A4GH-01 18 32443968 32443968 T C DTNA Missense_Mutation p.L475P 0.45 deleterious(0) probably_damaging(1) TCGA-HU-A4GH-01 18 32706939 32706939 A C MAPRE2 Missense_Mutation p.K213T 0.06 tolerated(0.37) benign(0.108) TCGA-HU-A4GH-01 18 32712012 32712012 T G MAPRE2 Missense_Mutation p.L256R 0.16 deleterious(0.04) benign(0.218) TCGA-HU-A4GH-01 18 33559028 33559028 T C C18orf21 3'UTR 0.33 TCGA-HU-A4GH-01 18 40854220 40854220 C T SYT4 Silent p.K58K 0.10 TCGA-HU-A4GH-01 18 42531398 42531398 C A SETBP1 Missense_Mutation p.T698N 0.26 deleterious(0.02) benign(0.242) TCGA-HU-A4GH-01 18 42618511 42618511 A C SETBP1 Silent p.S1354S 0.43 TCGA-HU-A4GH-01 18 47769287 47769287 A C CCDC11 Missense_Mutation p.L399R 0.29 deleterious(0) probably_damaging(0.971) TCGA-HU-A4GH-01 18 48443784 48443784 T G ME2 Missense_Mutation p.I179S 0.15 deleterious(0.02) probably_damaging(1) TCGA-HU-A4GH-01 18 61234015 61234015 T G SERPINB12 Missense_Mutation p.L330R 0.09 deleterious(0) probably_damaging(0.979) TCGA-HU-A4GH-01 18 71797672 71797672 A C FBXO15 Missense_Mutation p.V185G 0.12 tolerated(0.11) benign(0.164) TCGA-HU-A4GH-01 18 76753954 76753954 T C SALL3 Missense_Mutation p.S655P 0.41 tolerated(0.15) probably_damaging(0.974) TCGA-HU-A4GH-01 19 10685617 10685617 T C AP1M2 Missense_Mutation p.K379R 0.36 tolerated(0.14) benign(0.011) TCGA-HU-A4GH-01 19 11460642 11460642 C T CCDC159 Silent p.S28S 0.24 TCGA-HU-A4GH-01 19 11796366 11796366 T G ZNF833P RNA 0.10 TCGA-HU-A4GH-01 19 11917360 11917360 T G ZNF491 Missense_Mutation p.F198V 0.17 tolerated(0.49) benign(0.003) TCGA-HU-A4GH-01 19 11917993 11917993 A C ZNF491 Missense_Mutation p.K409Q 0.16 deleterious(0.01) probably_damaging(0.985) TCGA-HU-A4GH-01 19 12979894 12979894 A C MAST1 Missense_Mutation p.S930R 0.29 tolerated(0.27) benign(0.073) TCGA-HU-A4GH-01 19 13015434 13015434 A C SYCE2 Missense_Mutation p.F60V 0.32 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GH-01 19 23159902 23159902 A G ZNF728 Silent p.S79S 0.30 TCGA-HU-A4GH-01 19 23328922 23328922 A C ZNF730 Missense_Mutation p.K359T 0.17 deleterious(0.01) probably_damaging(0.934) TCGA-HU-A4GH-01 19 37130036 37130036 T C ZNF461 Missense_Mutation p.Q404R 0.28 deleterious(0.03) possibly_damaging(0.83) TCGA-HU-A4GH-01 19 37961217 37961217 C G ZNF570 5'UTR 0.07 TCGA-HU-A4GH-01 19 38160980 38160980 G C ZNF781 Missense_Mutation p.Q24E 0.08 tolerated(0.35) benign(0.326) TCGA-HU-A4GH-01 19 40542307 40542307 A G ZNF780B Silent p.T153T 0.07 TCGA-HU-A4GH-01 19 41455101 41455101 A C AC092071.1 3'Flank 0.20 TCGA-HU-A4GH-01 19 42375451 42375451 A C RPS19 3'UTR 0.14 TCGA-HU-A4GH-01 19 42822014 42822014 T C TMEM145 Missense_Mutation p.F352L 0.09 tolerated(0.18) benign(0.194) TCGA-HU-A4GH-01 19 43376021 43376021 A C PSG1 Missense_Mutation p.F203V 0.19 tolerated(0.98) benign(0.005) TCGA-HU-A4GH-01 19 44418060 44418060 T C ZNF45 Missense_Mutation p.S510G 0.12 tolerated(0.1) probably_damaging(0.986) TCGA-HU-A4GH-01 19 44792778 44792778 T G ZNF235 Missense_Mutation p.E270D 0.07 tolerated(0.13) benign(0.001) TCGA-HU-A4GH-01 19 46190914 46190914 T C SNRPD2 Missense_Mutation p.K85R 0.14 deleterious(0.02) benign(0.099) TCGA-HU-A4GH-01 19 46355623 46355623 T G SYMPK Silent p.A82A 0.07 TCGA-HU-A4GH-01 19 46388986 46388986 T G IRF2BP1 Missense_Mutation p.D16A 0.22 deleterious(0) probably_damaging(0.96) TCGA-HU-A4GH-01 19 46506709 46506709 T C CCDC61 Missense_Mutation p.F61L 0.21 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GH-01 19 46998655 46998655 A G PNMAL2 Missense_Mutation p.V23A 0.06 deleterious(0) possibly_damaging(0.607) TCGA-HU-A4GH-01 19 47769965 47769965 A T CCDC9 Missense_Mutation p.K273M 0.22 deleterious(0) possibly_damaging(0.905) TCGA-HU-A4GH-01 19 4818198 4818198 C T TICAM1 Silent p.L64L 0.19 TCGA-HU-A4GH-01 19 48806918 48806918 T G CCDC114 Missense_Mutation p.K289T 0.07 deleterious(0) probably_damaging(0.969) TCGA-HU-A4GH-01 19 49223977 49223977 A G RASIP1 3'UTR 0.14 TCGA-HU-A4GH-01 19 49573431 49573431 A T KCNA7 Silent p.P420P 0.22 TCGA-HU-A4GH-01 19 51133141 51133141 A G SYT3 Missense_Mutation p.L321P 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-HU-A4GH-01 19 51768881 51768881 T G SIGLECL1 Silent p.A94A 0.08 TCGA-HU-A4GH-01 19 52033695 52033695 G A SIGLEC6 Silent p.S250S 0.74 TCGA-HU-A4GH-01 19 53302261 53302261 C G ZNF28 3'UTR 0.17 TCGA-HU-A4GH-01 19 53741699 53741699 A C ZNF677 Missense_Mutation p.F94C 0.15 tolerated(0.06) possibly_damaging(0.75) TCGA-HU-A4GH-01 19 53994119 53994119 A G ZNF813 Silent p.R211R 0.11 TCGA-HU-A4GH-01 19 54600427 54600427 T C OSCAR Missense_Mutation p.K36R 0.21 tolerated(0.23) benign(0.373) TCGA-HU-A4GH-01 19 54761053 54761053 T G LILRB5 Missense_Mutation p.T2P 0.17 deleterious(0) possibly_damaging(0.637) TCGA-HU-A4GH-01 19 54783401 54783401 A G LILRB2 Missense_Mutation p.F153L 0.07 deleterious(0.02) possibly_damaging(0.9) TCGA-HU-A4GH-01 19 55143071 55143071 A C LILRB1 Missense_Mutation p.K64T 0.17 deleterious(0) benign(0.008) TCGA-HU-A4GH-01 19 55301612 55301612 T G CTB-61M7.1 RNA 0.24 TCGA-HU-A4GH-01 19 55451644 55451644 G A NLRP7 Silent p.G181G 0.11 TCGA-HU-A4GH-01 19 56467099 56467099 T G NLRP8 Missense_Mutation p.L559V 0.08 deleterious(0) probably_damaging(0.994) TCGA-HU-A4GH-01 19 56895607 56895607 T C ZNF582 Silent p.K393K 0.24 TCGA-HU-A4GH-01 19 57036726 57036726 T C ZNF471 Silent p.P430P 0.15 TCGA-HU-A4GH-01 19 57325574 57325574 T C PEG3 Silent p.E1412E 0.24 TCGA-HU-A4GH-01 19 57328547 57328547 C G PEG3 Missense_Mutation p.E421D 0.07 tolerated(0.08) benign(0.055) TCGA-HU-A4GH-01 19 57648269 57648269 T G ZIM3 Missense_Mutation p.E71D 0.34 tolerated(0.6) benign(0.014) TCGA-HU-A4GH-01 19 58445259 58445259 G A ZNF418 5'UTR 0.24 TCGA-HU-A4GH-01 19 58549309 58549309 A G ZSCAN1 Silent p.E35E 0.21 TCGA-HU-A4GH-01 19 6921819 6921819 T C EMR1 Silent p.A572A 0.34 TCGA-HU-A4GH-01 19 7963820 7963820 A G LRRC8E Missense_Mutation p.K138R 0.29 deleterious(0.05) probably_damaging(0.987) TCGA-HU-A4GH-01 19 8999559 8999559 T G MUC16 Missense_Mutation p.K13539T 0.14 probably_damaging(0.991) TCGA-HU-A4GH-01 19 9070034 9070034 T C MUC16 Silent p.S5804S 0.13 TCGA-HU-A4GH-01 19 9074873 9074873 T G MUC16 Silent p.S4191S 0.09 TCGA-HU-A4GH-01 19 9084689 9084689 T C MUC16 Missense_Mutation p.T2376A 0.33 unknown(0) TCGA-HU-A4GH-01 19 9085876 9085876 A C MUC16 Missense_Mutation p.I1980S 0.25 unknown(0) TCGA-HU-A4GH-01 19 9362093 9362093 T G OR7E24 Missense_Mutation p.F125C 0.13 deleterious(0.02) benign(0.111) TCGA-HU-A4GH-01 1 100154541 100154541 T G PALMD Missense_Mutation p.L242R 0.10 deleterious(0) probably_damaging(0.972) TCGA-HU-A4GH-01 1 10364540 10364540 T G KIF1B Intron 0.05 TCGA-HU-A4GH-01 1 107937898 107937898 C G NTNG1 Missense_Mutation p.P337R 0.05 tolerated(0.08) possibly_damaging(0.816) TCGA-HU-A4GH-01 1 107973474 107973474 A C NTNG1 Missense_Mutation p.E397A 0.10 tolerated(0.09) benign(0.186) TCGA-HU-A4GH-01 1 109380261 109380261 T G AKNAD1 Missense_Mutation p.S483R 0.21 tolerated(0.32) benign(0.012) TCGA-HU-A4GH-01 1 109794583 109794583 A G CELSR2 Missense_Mutation p.S628G 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-HU-A4GH-01 1 110557426 110557426 T G AHCYL1 Missense_Mutation p.F208V 0.12 deleterious(0.01) probably_damaging(0.982) TCGA-HU-A4GH-01 1 111216388 111216388 G A KCNA3 Silent p.A348A 0.60 TCGA-HU-A4GH-01 1 111690419 111690419 C T CEPT1 Missense_Mutation p.T28I 0.06 tolerated_low_confidence(0.07) benign(0.009) TCGA-HU-A4GH-01 1 115323092 115323092 G A SIKE1 Missense_Mutation p.A46V 0.08 tolerated(1) benign(0.013) TCGA-HU-A4GH-01 1 12336689 12336689 A C VPS13D Missense_Mutation p.D1015A 0.13 probably_damaging(0.969) TCGA-HU-A4GH-01 1 14106040 14106040 G C PRDM2 Missense_Mutation p.D584H 0.12 probably_damaging(0.995) TCGA-HU-A4GH-01 1 145518200 145518200 A T PEX11B Missense_Mutation p.N101I 0.05 deleterious(0.01) probably_damaging(0.997) TCGA-HU-A4GH-01 1 147094129 147094129 T G BCL9 Missense_Mutation p.L987R 0.04 deleterious(0) probably_damaging(0.986) TCGA-HU-A4GH-01 1 149859378 149859378 C G HIST2H2AB Missense_Mutation p.R30P 0.08 deleterious_low_confidence(0) probably_damaging(1) TCGA-HU-A4GH-01 1 149905557 149905557 A C MTMR11 Missense_Mutation p.L269R 0.21 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GH-01 1 150722509 150722509 G A CTSS Missense_Mutation p.H256Y 0.15 tolerated(0.07) possibly_damaging(0.726) TCGA-HU-A4GH-01 1 151338906 151338906 C T SELENBP1 Missense_Mutation p.V230I 0.09 tolerated(0.26) benign(0.155) TCGA-HU-A4GH-01 1 152128952 152128952 T G RPTN Missense_Mutation p.K208T 0.07 deleterious(0) benign(0.119) TCGA-HU-A4GH-01 1 152280726 152280726 T G FLG Missense_Mutation p.E2212D 0.08 possibly_damaging(0.523) TCGA-HU-A4GH-01 1 152282859 152282859 C T FLG Silent p.Q1501Q 0.04 TCGA-HU-A4GH-01 1 152285666 152285666 T G FLG Missense_Mutation p.S566R 0.03 probably_damaging(0.987) TCGA-HU-A4GH-01 1 152286146 152286146 A T FLG Missense_Mutation p.S406T 0.04 probably_damaging(0.93) TCGA-HU-A4GH-01 1 152538686 152538686 T G LCE3E 5'UTR 0.11 TCGA-HU-A4GH-01 1 152732447 152732447 T A KPRP Missense_Mutation p.V128D 0.04 deleterious(0.01) possibly_damaging(0.862) TCGA-HU-A4GH-01 1 152760231 152760231 T C LCE1E 3'UTR 0.68 TCGA-HU-A4GH-01 1 153085145 153085145 T G SPRR2F Missense_Mutation p.K22T 0.10 unknown(0) TCGA-HU-A4GH-01 1 154030652 154030652 A C NUP210L Missense_Mutation p.L1007R 0.09 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GH-01 1 154318828 154318828 T C ATP8B2 Missense_Mutation p.L1000P 0.13 deleterious(0.01) possibly_damaging(0.805) TCGA-HU-A4GH-01 1 154918085 154918085 A C PBXIP1 Missense_Mutation p.F689V 0.08 deleterious(0.01) probably_damaging(0.959) TCGA-HU-A4GH-01 1 155838114 155838114 A C SYT11 Missense_Mutation p.E131D 0.07 tolerated(0.16) benign(0.145) TCGA-HU-A4GH-01 1 156779176 156779176 T G SH2D2A Missense_Mutation p.K284T 0.07 tolerated(0.18) possibly_damaging(0.502) TCGA-HU-A4GH-01 1 156812193 156812193 T C INSRR Silent p.A1078A 0.05 TCGA-HU-A4GH-01 1 157667015 157667015 T G FCRL3 Missense_Mutation p.E253D 0.31 deleterious(0.01) possibly_damaging(0.702) TCGA-HU-A4GH-01 1 158061341 158061341 A G KIRREL Missense_Mutation p.E489G 0.22 deleterious(0) possibly_damaging(0.691) TCGA-HU-A4GH-01 1 158226071 158226071 A G CD1A Silent p.Q201Q 0.04 TCGA-HU-A4GH-01 1 158517021 158517021 G T OR6Y1 Missense_Mutation p.P292H 0.09 deleterious(0) probably_damaging(1) TCGA-HU-A4GH-01 1 158549004 158549004 A T OR10X1 Missense_Mutation p.L229H 0.04 deleterious(0) probably_damaging(0.981) TCGA-HU-A4GH-01 1 158637785 158637785 T G SPTA1 Missense_Mutation p.K634T 0.23 deleterious(0.03) benign(0.201) TCGA-HU-A4GH-01 1 158815671 158815671 T G MNDA Missense_Mutation p.F289V 0.07 tolerated(0.59) benign(0.002) TCGA-HU-A4GH-01 1 159175526 159175526 G T DARC Silent p.L101L 0.17 TCGA-HU-A4GH-01 1 159175541 159175541 G T DARC Silent p.V106V 0.15 TCGA-HU-A4GH-01 1 159175542 159175542 G T DARC Missense_Mutation p.G107C 0.15 deleterious(0) probably_damaging(1) TCGA-HU-A4GH-01 1 159284016 159284016 A C OR10J3 Missense_Mutation p.L145R 0.22 deleterious(0) probably_damaging(0.986) TCGA-HU-A4GH-01 1 159409693 159409693 A C OR10J1 Missense_Mutation p.T49P 0.50 deleterious(0.01) benign(0.12) TCGA-HU-A4GH-01 1 159409696 159409696 T G OR10J1 Missense_Mutation p.L50V 0.05 tolerated(0.06) benign(0.252) TCGA-HU-A4GH-01 1 159410501 159410501 A C OR10J1 Missense_Mutation p.K318T 0.08 tolerated(0.07) benign(0.066) TCGA-HU-A4GH-01 1 159505755 159505755 A C OR10J5 Missense_Mutation p.L15V 0.08 tolerated(0.51) benign(0.434) TCGA-HU-A4GH-01 1 161203037 161203037 T G NR1I3 Missense_Mutation p.Q110H 0.04 deleterious(0.01) possibly_damaging(0.683) TCGA-HU-A4GH-01 1 161594273 161594273 A G FCGR3B 3'UTR 0.03 TCGA-HU-A4GH-01 1 16235934 16235934 A C SPEN Missense_Mutation p.S334R 0.06 probably_damaging(0.993) TCGA-HU-A4GH-01 1 16255028 16255028 A T SPEN Missense_Mutation p.S765C 0.08 probably_damaging(0.997) TCGA-HU-A4GH-01 1 16256649 16256649 A T SPEN Missense_Mutation p.E1305V 0.05 possibly_damaging(0.765) TCGA-HU-A4GH-01 1 16458611 16458611 A C EPHA2 Missense_Mutation p.F758C 0.07 deleterious(0) probably_damaging(1) TCGA-HU-A4GH-01 1 167870911 167870911 C T ADCY10 Missense_Mutation p.R142Q 0.09 tolerated(0.39) probably_damaging(1) TCGA-HU-A4GH-01 1 169519204 169519204 A C F5 Silent p.T482T 0.04 TCGA-HU-A4GH-01 1 171162601 171162601 T G FMO2 Missense_Mutation p.L87R 0.04 deleterious(0) possibly_damaging(0.548) TCGA-HU-A4GH-01 1 171310887 171310887 T G FMO4 Missense_Mutation p.L529R 0.24 deleterious(0) probably_damaging(0.984) TCGA-HU-A4GH-01 1 172377092 172377092 A C DNM3 3'UTR 0.15 TCGA-HU-A4GH-01 1 172411788 172411788 G T PIGC 5'UTR 0.04 TCGA-HU-A4GH-01 1 17316763 17316763 C T ATP13A2 Silent p.A757A 0.71 TCGA-HU-A4GH-01 1 17359570 17359570 T G SDHB Silent p.R91R 0.09 TCGA-HU-A4GH-01 1 173881028 173881028 A C SERPINC1 Missense_Mutation p.L178R 0.05 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GH-01 1 176905356 176905356 C A ASTN1 Intron 0.20 TCGA-HU-A4GH-01 1 184764288 184764288 G A FAM129A Silent p.S870S 0.05 TCGA-HU-A4GH-01 1 185143603 185143603 T G SWT1 Missense_Mutation p.N108K 0.10 deleterious(0) benign(0.219) TCGA-HU-A4GH-01 1 186077709 186077709 A G HMCN1 Missense_Mutation p.R3657G 0.10 benign(0.012) TCGA-HU-A4GH-01 1 19166828 19166828 T C TAS1R2 Missense_Mutation p.I595M 0.51 tolerated(0.47) benign(0.004) TCGA-HU-A4GH-01 1 192128435 192128435 T G RGS18 Missense_Mutation p.L69V 0.13 tolerated(0.18) benign(0.309) TCGA-HU-A4GH-01 1 192312112 192312112 A G RGS21 5'UTR 0.08 TCGA-HU-A4GH-01 1 19585179 19585179 T G MRTO4 Missense_Mutation p.L192R 0.11 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GH-01 1 196654199 196654199 T C CFH Missense_Mutation p.S266P 0.27 deleterious(0.02) benign(0.09) TCGA-HU-A4GH-01 1 197390201 197390201 T A CRB1 Missense_Mutation p.L415M 0.17 tolerated(0.11) probably_damaging(0.981) TCGA-HU-A4GH-01 1 202704604 202704604 T C KDM5B Missense_Mutation p.S1126G 0.20 tolerated(0.1) benign(0.183) TCGA-HU-A4GH-01 1 203316609 203316609 A C FMOD Missense_Mutation p.F264V 0.09 deleterious(0.02) possibly_damaging(0.718) TCGA-HU-A4GH-01 1 203467901 203467901 A T OPTC Missense_Mutation p.T155S 0.09 deleterious(0.01) probably_damaging(0.971) TCGA-HU-A4GH-01 1 206773628 206773628 T A EIF2D Missense_Mutation p.S313C 0.12 deleterious(0) probably_damaging(0.926) TCGA-HU-A4GH-01 1 207107909 207107910 - A PIGR Frame_Shift_Ins p.D521* 0.31 TCGA-HU-A4GH-01 1 207639927 207639927 A G CR2 Missense_Mutation p.T39A 0.24 tolerated(0.6) benign(0.023) TCGA-HU-A4GH-01 1 207871182 207871182 A G CR1L Missense_Mutation p.Q369R 0.07 tolerated(0.06) possibly_damaging(0.637) TCGA-HU-A4GH-01 1 21137275 21137275 A C EIF4G3 Missense_Mutation p.L1517R 0.04 deleterious(0) probably_damaging(1) TCGA-HU-A4GH-01 1 212798506 212798506 A G FAM71A Missense_Mutation p.E96G 0.13 deleterious(0) benign(0.322) TCGA-HU-A4GH-01 1 214819436 214819436 C A CENPF Missense_Mutation p.L2175I 0.49 benign(0.26) TCGA-HU-A4GH-01 1 215987215 215987215 T G USH2A Missense_Mutation p.K3201T 0.48 benign(0.091) TCGA-HU-A4GH-01 1 22054983 22054983 A T USP48 Intron 0.09 TCGA-HU-A4GH-01 1 22181917 22181917 T C HSPG2 Silent p.Q1959Q 0.09 TCGA-HU-A4GH-01 1 222801279 222801279 A C MIA3 Missense_Mutation p.K239N 0.10 deleterious(0.03) benign(0.06) TCGA-HU-A4GH-01 1 222832160 222832160 T G MIA3 Silent p.T1568T 0.47 TCGA-HU-A4GH-01 1 226784652 226784652 T G C1orf95 Missense_Mutation p.F118V 0.06 tolerated(0.08) benign(0.301) TCGA-HU-A4GH-01 1 227076667 227076667 T G PSEN2 Missense_Mutation p.I235S 0.05 deleterious(0.03) probably_damaging(0.996) TCGA-HU-A4GH-01 1 22816605 22816605 A C ZBTB40 Missense_Mutation p.N55T 0.04 deleterious(0.04) benign(0.21) TCGA-HU-A4GH-01 1 228362473 228362473 C T IBA57 Missense_Mutation p.A141V 0.14 tolerated(0.19) benign(0.013) TCGA-HU-A4GH-01 1 228509606 228509606 A G OBSCN Missense_Mutation p.S5979G 0.07 benign(0.004) TCGA-HU-A4GH-01 1 236849934 236849934 G T ACTN2 5'UTR 0.08 TCGA-HU-A4GH-01 1 237758836 237758836 A G RYR2 Missense_Mutation p.E1492G 0.19 benign(0.216) TCGA-HU-A4GH-01 1 238049176 238049176 T G ZP4 Missense_Mutation p.S284R 0.21 tolerated(1) benign(0.013) TCGA-HU-A4GH-01 1 24083479 24083479 T C TCEB3 Silent p.H733H 0.10 TCGA-HU-A4GH-01 1 2428315 2428315 A G PLCH2 Missense_Mutation p.Q634R 0.61 tolerated(0.15) possibly_damaging(0.627) TCGA-HU-A4GH-01 1 247464342 247464342 A C ZNF496 Missense_Mutation p.F415V 0.14 deleterious(0.03) probably_damaging(0.94) TCGA-HU-A4GH-01 1 248129218 248129218 A C OR2AK2 Missense_Mutation p.E195D 0.21 tolerated(0.53) benign(0.327) TCGA-HU-A4GH-01 1 248202534 248202534 G - OR2L2 3'UTR 0.15 TCGA-HU-A4GH-01 1 248367308 248367308 A C OR2M3 Nonstop_Mutation p.*313Cext*3 0.15 TCGA-HU-A4GH-01 1 248845045 248845045 G A OR14I1 Silent p.S187S 0.47 TCGA-HU-A4GH-01 1 24975417 24975417 T G SRRM1 Missense_Mutation p.F101C 0.07 probably_damaging(1) TCGA-HU-A4GH-01 1 26349405 26349405 A G EXTL1 Missense_Mutation p.K90E 0.12 deleterious(0.04) benign(0.164) TCGA-HU-A4GH-01 1 27106463 27106463 A C ARID1A Missense_Mutation p.K2025T 0.07 benign(0.437) TCGA-HU-A4GH-01 1 28176805 28176805 G A PPP1R8 Missense_Mutation p.D302N 0.19 tolerated(0.18) benign(0.032) TCGA-HU-A4GH-01 1 29069077 29069077 T G YTHDF2 Missense_Mutation p.F99V 0.14 deleterious(0.01) possibly_damaging(0.721) TCGA-HU-A4GH-01 1 33117636 33117636 T C RBBP4 Silent p.T46T 0.04 TCGA-HU-A4GH-01 1 34035042 34035042 A G CSMD2 Missense_Mutation p.L2690P 0.07 deleterious(0) probably_damaging(0.986) TCGA-HU-A4GH-01 1 34046405 34046405 A C CSMD2 Silent p.R2447R 0.20 TCGA-HU-A4GH-01 1 37282714 37282714 T A GRIK3 Missense_Mutation p.T680S 0.14 tolerated(0.12) benign(0.357) TCGA-HU-A4GH-01 1 40947493 40947493 A G ZFP69 Silent p.E62E 0.08 TCGA-HU-A4GH-01 1 43880837 43880837 G T SZT2 Missense_Mutation p.D195Y 0.40 deleterious(0.04) benign(0.323) TCGA-HU-A4GH-01 1 43917465 43917465 T C HYI Intron 0.10 TCGA-HU-A4GH-01 1 45232771 45232771 G C KIF2C Missense_Mutation p.V700L 0.31 tolerated(0.3) benign(0.027) TCGA-HU-A4GH-01 1 46751978 46751978 T A LRRC41 Missense_Mutation p.N184I 0.07 deleterious(0) possibly_damaging(0.792) TCGA-HU-A4GH-01 1 52277666 52277666 T G NRD1 Missense_Mutation p.E661D 0.24 tolerated(0.1) benign(0.026) TCGA-HU-A4GH-01 1 64608148 64608148 C T ROR1 Missense_Mutation p.S330L 0.08 deleterious(0.04) benign(0.226) TCGA-HU-A4GH-01 1 65313281 65313281 A C JAK1 Silent p.T611T 0.06 TCGA-HU-A4GH-01 1 67147606 67147606 A C SGIP1 Missense_Mutation p.D290A 0.15 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-HU-A4GH-01 1 70700393 70700393 A G SRSF11 Silent p.P154P 0.18 TCGA-HU-A4GH-01 1 75672319 75672319 T C SLC44A5 Silent p.Q711Q 0.32 TCGA-HU-A4GH-01 1 77510166 77510166 A G ST6GALNAC5 Missense_Mutation p.D180G 0.06 probably_damaging(1) TCGA-HU-A4GH-01 1 7796536 7796536 A C CAMTA1 Missense_Mutation p.T1067P 0.06 deleterious(0) probably_damaging(0.996) TCGA-HU-A4GH-01 1 85331459 85331459 A C LPAR3 Silent p.A115A 0.08 TCGA-HU-A4GH-01 1 86203164 86203164 A T COL24A1 Missense_Mutation p.L1566H 0.25 deleterious(0) probably_damaging(0.992) TCGA-HU-A4GH-01 1 89729464 89729464 T G GBP5 Missense_Mutation p.E439D 0.22 tolerated(0.1) benign(0.02) TCGA-HU-A4GH-01 1 91784878 91784878 A C HFM1 Missense_Mutation p.I884M 0.11 deleterious(0.03) probably_damaging(0.954) TCGA-HU-A4GH-01 1 92707767 92707767 A C C1orf146 Splice_Site p.X23_splice 0.11 TCGA-HU-A4GH-01 1 93091424 93091424 A C EVI5 Missense_Mutation p.L516R 0.13 deleterious(0) possibly_damaging(0.901) TCGA-HU-A4GH-01 1 94487448 94487448 A C ABCA4 Missense_Mutation p.L1576R 0.10 deleterious(0.01) possibly_damaging(0.498) TCGA-HU-A4GH-01 1 97564097 97564097 G A DPYD Missense_Mutation p.S905L 0.09 tolerated(0.3) benign(0.001) TCGA-HU-A4GH-01 20 13279747 13279747 T G ISM1 Missense_Mutation p.F346V 0.31 deleterious(0.02) probably_damaging(0.93) TCGA-HU-A4GH-01 20 1629745 1629745 T C SIRPG Missense_Mutation p.E128G 0.09 tolerated(0.17) benign(0.004) TCGA-HU-A4GH-01 20 17474931 17474931 C T BFSP1 Missense_Mutation p.D596N 0.22 tolerated(0.29) benign(0.367) TCGA-HU-A4GH-01 20 20610136 20610136 C T RALGAPA2 Silent p.S368S 0.19 TCGA-HU-A4GH-01 20 29891089 29891089 T C DEFB116 Missense_Mutation p.K79E 0.04 tolerated(0.36) benign(0.037) TCGA-HU-A4GH-01 20 29976869 29976869 T C DEFB119 Missense_Mutation p.T76A 0.07 tolerated_low_confidence(0.2) benign(0.036) TCGA-HU-A4GH-01 20 33315155 33315155 C G NCOA6 Missense_Mutation p.R2019P 0.05 possibly_damaging(0.852) TCGA-HU-A4GH-01 20 34505573 34505573 T G PHF20 Missense_Mutation p.F665V 0.09 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GH-01 20 34618299 34618299 A T CNBD2 Missense_Mutation p.K483M 0.10 tolerated(0.21) possibly_damaging(0.893) TCGA-HU-A4GH-01 20 35857032 35857032 A C RPN2 Missense_Mutation p.K460T 0.09 deleterious(0) possibly_damaging(0.482) TCGA-HU-A4GH-01 20 3687035 3687035 T G SIGLEC1 Missense_Mutation p.N123T 0.13 deleterious(0) probably_damaging(0.971) TCGA-HU-A4GH-01 20 3838286 3838286 G C MAVS Missense_Mutation p.R41P 0.14 deleterious(0) possibly_damaging(0.779) TCGA-HU-A4GH-01 20 39793674 39793674 A G PLCG1 Missense_Mutation p.K440R 0.10 tolerated(0.09) probably_damaging(0.999) TCGA-HU-A4GH-01 20 40116398 40116398 C T CHD6 Silent p.E636E 0.14 TCGA-HU-A4GH-01 20 40877418 40877418 C T PTPRT Missense_Mutation p.V741M 0.10 tolerated(0.07) possibly_damaging(0.459) TCGA-HU-A4GH-01 20 45130560 45130560 T G ZNF334 Missense_Mutation p.K473T 0.09 deleterious(0.02) probably_damaging(0.975) TCGA-HU-A4GH-01 20 45131159 45131159 A C ZNF334 Silent p.T273T 0.07 TCGA-HU-A4GH-01 20 45239199 45239199 T C SLC13A3 Missense_Mutation p.S143G 0.06 deleterious(0.02) probably_damaging(0.992) TCGA-HU-A4GH-01 20 46251013 46251013 T G NCOA3 Missense_Mutation p.L8V 0.11 tolerated(0.11) possibly_damaging(0.606) TCGA-HU-A4GH-01 20 46264433 46264433 T C NCOA3 Missense_Mutation p.S494P 0.09 tolerated(0.57) benign(0.026) TCGA-HU-A4GH-01 20 47604924 47604924 A G ARFGEF2 Missense_Mutation p.Q787R 0.10 deleterious(0) possibly_damaging(0.737) TCGA-HU-A4GH-01 20 47990728 47990728 T C KCNB1 Missense_Mutation p.S457G 0.06 deleterious(0.05) benign(0.036) TCGA-HU-A4GH-01 20 52773991 52773991 A G CYP24A1 Missense_Mutation p.V457A 0.07 deleterious(0.01) benign(0.142) TCGA-HU-A4GH-01 20 54579040 54579040 G T CBLN4 Nonsense_Mutation p.S63* 0.05 TCGA-HU-A4GH-01 20 57246330 57246330 T G STX16 Missense_Mutation p.L257V 0.07 deleterious(0.01) probably_damaging(0.951) TCGA-HU-A4GH-01 20 58467402 58467402 T G SYCP2 Missense_Mutation p.K669N 0.05 tolerated(0.09) benign(0.041) TCGA-HU-A4GH-01 20 5903802 5903802 G A CHGB Missense_Mutation p.E338K 0.14 deleterious(0.02) probably_damaging(0.987) TCGA-HU-A4GH-01 20 60582672 60582672 T A TAF4 Missense_Mutation p.E635D 0.07 probably_damaging(0.987) TCGA-HU-A4GH-01 20 60706523 60706523 A C LSM14B Missense_Mutation p.K316T 0.15 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GH-01 20 62737206 62737206 A C NPBWR2 Missense_Mutation p.F327V 0.15 deleterious(0) benign(0.14) TCGA-HU-A4GH-01 20 62853325 62853325 A C MYT1 Missense_Mutation p.K774T 0.10 probably_damaging(0.986) TCGA-HU-A4GH-01 20 76727 76727 T G DEFB125 Missense_Mutation p.L47R 0.06 tolerated(0.1) probably_damaging(0.973) TCGA-HU-A4GH-01 20 860401 860401 C T ANGPT4 Missense_Mutation p.D348N 0.20 tolerated(0.05) probably_damaging(0.981) TCGA-HU-A4GH-01 21 31588128 31588128 T G CLDN8 Missense_Mutation p.N39T 0.09 deleterious(0) probably_damaging(1) TCGA-HU-A4GH-01 21 31913917 31913917 G A KRTAP19-6 3'UTR 0.47 TCGA-HU-A4GH-01 21 34003768 34003768 T G SYNJ1 Missense_Mutation p.K1459T 0.20 tolerated_low_confidence(0.37) benign(0.033) TCGA-HU-A4GH-01 21 35147303 35147303 T G ITSN1 Missense_Mutation p.L496R 0.13 deleterious(0) probably_damaging(0.99) TCGA-HU-A4GH-01 21 35154338 35154338 A G ITSN1 Silent p.K575K 0.31 TCGA-HU-A4GH-01 21 43258119 43258119 T C PRDM15 Missense_Mutation p.T675A 0.04 tolerated_low_confidence(0.57) benign(0.002) TCGA-HU-A4GH-01 21 43809184 43809184 C G TMPRSS3 Intron 0.37 TCGA-HU-A4GH-01 21 43809197 43809197 C T TMPRSS3 Intron 0.33 TCGA-HU-A4GH-01 21 44185506 44185506 A C PDE9A Missense_Mutation p.I420L 0.22 deleterious(0.02) benign(0.259) TCGA-HU-A4GH-01 21 44189228 44189228 A C PDE9A Missense_Mutation p.K518T 0.46 deleterious(0) possibly_damaging(0.509) TCGA-HU-A4GH-01 21 46604862 46604862 G A ADARB1 Missense_Mutation p.R514H 0.30 deleterious(0) possibly_damaging(0.479) TCGA-HU-A4GH-01 21 46910218 46910218 G T COL18A1 Silent p.G843G 0.21 TCGA-HU-A4GH-01 21 46950884 46950884 G A SLC19A1 Silent p.G317G 0.25 TCGA-HU-A4GH-01 22 19121815 19121815 G A DGCR14 Missense_Mutation p.P442L 0.23 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GH-01 22 20128995 20128995 A G ZDHHC8 Missense_Mutation p.K356R 0.09 tolerated(0.12) benign(0.034) TCGA-HU-A4GH-01 22 21107256 21107256 G A PI4KA Silent p.N974N 0.05 TCGA-HU-A4GH-01 22 22663117 22663117 A C BMS1P20 RNA 0.35 TCGA-HU-A4GH-01 22 22782319 22782319 A C IGLV5-37 Missense_Mutation p.Q106P 0.18 deleterious(0) probably_damaging(0.985) TCGA-HU-A4GH-01 22 23401893 23401893 T G RTDR1 Missense_Mutation p.K265T 0.16 deleterious(0) probably_damaging(0.993) TCGA-HU-A4GH-01 22 24219370 24219370 T A SLC2A11 Intron 0.12 TCGA-HU-A4GH-01 22 25019864 25019864 A G GGT1 Missense_Mutation p.K334R 0.14 tolerated(0.45) benign(0.008) TCGA-HU-A4GH-01 22 28195419 28195419 T G MN1 Missense_Mutation p.Q371H 0.27 probably_damaging(0.994) TCGA-HU-A4GH-01 22 32480543 32480543 A C SLC5A1 Missense_Mutation p.D261A 0.16 deleterious(0) probably_damaging(0.968) TCGA-HU-A4GH-01 22 35789645 35789645 T C HMOX1 3'UTR 0.09 TCGA-HU-A4GH-01 22 35947700 35947700 A C RASD2 Missense_Mutation p.K141T 0.08 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GH-01 22 36661318 36661318 C T APOL1 Missense_Mutation p.R162W 0.06 deleterious(0.05) probably_damaging(0.932) TCGA-HU-A4GH-01 22 38119513 38119513 A T TRIOBP Missense_Mutation p.E317V 0.07 tolerated_low_confidence(0.13) unknown(0) TCGA-HU-A4GH-01 22 39122387 39122387 A C GTPBP1 Missense_Mutation p.K448T 0.06 deleterious(0) probably_damaging(0.996) TCGA-HU-A4GH-01 22 41657532 41657532 T C RANGAP1 Missense_Mutation p.K178R 0.13 tolerated(0.26) benign(0.055) TCGA-HU-A4GH-01 22 41739541 41739541 A T ZC3H7B Missense_Mutation p.T474S 0.22 deleterious(0.05) possibly_damaging(0.734) TCGA-HU-A4GH-01 22 42473316 42473316 A G FAM109B Missense_Mutation p.S7G 0.15 deleterious(0) probably_damaging(0.99) TCGA-HU-A4GH-01 2 102959826 102959826 T G IL1RL1 Missense_Mutation p.N307K 0.07 deleterious(0) probably_damaging(0.938) TCGA-HU-A4GH-01 2 105859262 105859262 A G GPR45 Missense_Mutation p.K316R 0.20 deleterious(0.01) possibly_damaging(0.893) TCGA-HU-A4GH-01 2 107460346 107460346 A C ST6GAL2 Missense_Mutation p.F30V 0.19 probably_damaging(0.999) TCGA-HU-A4GH-01 2 108863796 108863796 T G SULT1C3 Missense_Mutation p.L49R 0.16 deleterious(0) probably_damaging(0.997) TCGA-HU-A4GH-01 2 113890280 113890280 C T IL1RN Silent p.R125R 0.07 TCGA-HU-A4GH-01 2 120204334 120204334 C - SCTR Splice_Site p.X380_splice 0.34 TCGA-HU-A4GH-01 2 120366116 120366116 T G PCDP1 Missense_Mutation p.L391R 0.05 tolerated(0.18) benign(0.015) TCGA-HU-A4GH-01 2 120387510 120387510 T G PCDP1 Missense_Mutation p.S570R 0.14 tolerated(0.66) benign(0.055) TCGA-HU-A4GH-01 2 128322862 128322862 T C MYO7B Missense_Mutation p.S63P 0.11 deleterious(0.01) possibly_damaging(0.719) TCGA-HU-A4GH-01 2 128324348 128324348 A C MYO7B Missense_Mutation p.N139T 0.27 deleterious(0) possibly_damaging(0.849) TCGA-HU-A4GH-01 2 128342423 128342423 A C MYO7B Missense_Mutation p.K542T 0.32 deleterious(0) possibly_damaging(0.85) TCGA-HU-A4GH-01 2 131976386 131976386 A C POTEE Silent p.G137G 0.20 TCGA-HU-A4GH-01 2 132021841 132021841 A G POTEE Missense_Mutation p.K938R 0.06 tolerated_low_confidence(0.05) probably_damaging(0.955) TCGA-HU-A4GH-01 2 135099202 135099202 T G MGAT5 Missense_Mutation p.F283L 0.09 tolerated(1) possibly_damaging(0.624) TCGA-HU-A4GH-01 2 136623713 136623713 T G MCM6 Missense_Mutation p.T306P 0.09 deleterious(0.02) possibly_damaging(0.707) TCGA-HU-A4GH-01 2 149847707 149847707 T C KIF5C Missense_Mutation p.S634P 0.13 deleterious(0.04) benign(0.175) TCGA-HU-A4GH-01 2 155711631 155711631 C T KCNJ3 Nonsense_Mutation p.Q438* 0.17 TCGA-HU-A4GH-01 2 160667104 160667104 A G LY75-CD302 Silent p.G1544G 0.10 TCGA-HU-A4GH-01 2 160876695 160876695 G A PLA2R1 Silent p.V458V 0.31 TCGA-HU-A4GH-01 2 162627547 162627547 A G SLC4A10 Missense_Mutation p.E38G 0.33 deleterious(0.03) benign(0.022) TCGA-HU-A4GH-01 2 167162347 167162347 A C SCN9A Missense_Mutation p.L184R 0.22 deleterious(0) probably_damaging(1) TCGA-HU-A4GH-01 2 177053527 177053527 A C HOXD1 5'UTR 0.27 TCGA-HU-A4GH-01 2 179214014 179214014 G A OSBPL6 Missense_Mutation p.D376N 0.24 tolerated(0.33) possibly_damaging(0.457) TCGA-HU-A4GH-01 2 179418814 179418814 T C TTN Missense_Mutation p.K29675R 0.23 TCGA-HU-A4GH-01 2 179444488 179444488 C T TTN Missense_Mutation p.G22479D 0.51 TCGA-HU-A4GH-01 2 179586740 179586740 T C TTN Silent p.K7550K 0.22 TCGA-HU-A4GH-01 2 179604861 179604861 T G TTN Missense_Mutation p.K4367Q 0.16 TCGA-HU-A4GH-01 2 179605054 179605054 T G TTN Missense_Mutation p.K4302N 0.06 TCGA-HU-A4GH-01 2 179647069 179647069 A G TTN Missense_Mutation p.F1084L 0.24 TCGA-HU-A4GH-01 2 187627276 187627276 T A FAM171B Missense_Mutation p.L736H 0.07 deleterious(0) probably_damaging(1) TCGA-HU-A4GH-01 2 196774826 196774826 T G DNAH7 Missense_Mutation p.K1343N 0.08 deleterious(0) probably_damaging(0.969) TCGA-HU-A4GH-01 2 198498574 198498574 T G RFTN2 Missense_Mutation p.S196R 0.27 deleterious(0.02) benign(0.361) TCGA-HU-A4GH-01 2 207175077 207175077 T G ZDBF2 Missense_Mutation p.I1942S 0.08 deleterious(0.01) benign(0.227) TCGA-HU-A4GH-01 2 207508994 207508994 C G AC010731.4 RNA 0.16 TCGA-HU-A4GH-01 2 210558124 210558124 A C MAP2 Missense_Mutation p.E410D 0.19 tolerated_low_confidence(0.22) possibly_damaging(0.796) TCGA-HU-A4GH-01 2 210559603 210559603 A C MAP2 Missense_Mutation p.K903N 0.31 deleterious_low_confidence(0) probably_damaging(1) TCGA-HU-A4GH-01 2 211081208 211081208 A C ACADL Silent p.G133G 0.22 TCGA-HU-A4GH-01 2 211469879 211469879 A C CPS1 Missense_Mutation p.K636N 0.20 deleterious(0) benign(0.176) TCGA-HU-A4GH-01 2 21251320 21251320 A C APOB Missense_Mutation p.S570A 0.05 benign(0.027) TCGA-HU-A4GH-01 2 21252624 21252624 A C APOB Missense_Mutation p.L502V 0.14 benign(0.003) TCGA-HU-A4GH-01 2 219028947 219028947 A C CXCR1 Missense_Mutation p.F330V 0.28 tolerated(0.22) benign(0.009) TCGA-HU-A4GH-01 2 219692328 219692328 T C PRKAG3 Missense_Mutation p.K282R 0.25 tolerated(0.24) benign(0.008) TCGA-HU-A4GH-01 2 219920314 219920314 G A IHH Missense_Mutation p.T284M 0.59 tolerated(0.1) possibly_damaging(0.778) TCGA-HU-A4GH-01 2 220034257 220034257 A G SLC23A3 Silent p.T102T 0.07 TCGA-HU-A4GH-01 2 220505320 220505320 A C SLC4A3 Missense_Mutation p.K1176T 0.08 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GH-01 2 227875129 227875129 C T COL4A4 Silent p.T1474T 0.29 TCGA-HU-A4GH-01 2 228416701 228416701 A G AGFG1 Missense_Mutation p.S493G 0.10 tolerated(0.08) probably_damaging(0.989) TCGA-HU-A4GH-01 2 228882528 228882528 T G SPHKAP Missense_Mutation p.K1014N 0.09 deleterious(0.01) probably_damaging(0.996) TCGA-HU-A4GH-01 2 228884060 228884060 C T SPHKAP Missense_Mutation p.A504T 0.08 deleterious(0) probably_damaging(0.996) TCGA-HU-A4GH-01 2 24262225 24262225 T C C2orf44 Missense_Mutation p.K47R 0.38 tolerated(0.17) benign(0.045) TCGA-HU-A4GH-01 2 27278631 27278631 A G AGBL5 Silent p.K330K 0.06 TCGA-HU-A4GH-01 2 27663749 27663749 T C NRBP1 Missense_Mutation p.V424A 0.06 tolerated(0.69) benign(0.004) TCGA-HU-A4GH-01 2 27801181 27801181 A C C2orf16 Missense_Mutation p.E581A 0.19 deleterious(0.05) benign(0.001) TCGA-HU-A4GH-01 2 27803126 27803126 A C C2orf16 Missense_Mutation p.Q1229H 0.09 deleterious(0.04) benign(0.001) TCGA-HU-A4GH-01 2 39944178 39944178 T G TMEM178A Silent p.T227T 0.24 TCGA-HU-A4GH-01 2 43458445 43458445 T G THADA Missense_Mutation p.N1835T 0.19 deleterious(0) probably_damaging(1) TCGA-HU-A4GH-01 2 44065791 44065791 C T ABCG5 Missense_Mutation p.G10R 0.50 tolerated_low_confidence(0.53) benign(0.001) TCGA-HU-A4GH-01 2 44599904 44599904 G C CAMKMT Missense_Mutation p.R63T 0.23 deleterious(0) possibly_damaging(0.568) TCGA-HU-A4GH-01 2 45235747 45235747 A G SIX2 Missense_Mutation p.V168A 0.05 deleterious(0) probably_damaging(0.997) TCGA-HU-A4GH-01 2 45789805 45789805 A C SRBD1 Missense_Mutation p.C466G 0.08 deleterious(0.01) possibly_damaging(0.721) TCGA-HU-A4GH-01 2 54114530 54114530 T C PSME4 Missense_Mutation p.E1532G 0.07 tolerated(0.12) benign(0.071) TCGA-HU-A4GH-01 2 54482400 54482400 A C TSPYL6 Missense_Mutation p.F297V 0.05 tolerated(0.06) possibly_damaging(0.69) TCGA-HU-A4GH-01 2 54483114 54483114 C - TSPYL6 Frame_Shift_Del p.V59Sfs*32 0.20 TCGA-HU-A4GH-01 2 64139522 64139522 A T VPS54 Missense_Mutation p.L861H 0.15 deleterious(0) probably_damaging(1) TCGA-HU-A4GH-01 2 65296690 65296690 A G CEP68 Missense_Mutation p.S38G 0.11 tolerated(0.17) benign(0.009) TCGA-HU-A4GH-01 2 68729914 68729914 C A APLF Missense_Mutation p.P74T 0.26 deleterious(0) probably_damaging(1) TCGA-HU-A4GH-01 2 70188132 70188132 T C ASPRV1 Missense_Mutation p.D230G 0.07 tolerated(0.06) benign(0.176) TCGA-HU-A4GH-01 2 7023620 7023620 G A RSAD2 Silent p.V155V 0.28 TCGA-HU-A4GH-01 2 74745709 74745709 G A DQX1 Missense_Mutation p.P673L 0.38 tolerated(0.1) benign(0.312) TCGA-HU-A4GH-01 2 74750496 74750496 A C DQX1 Missense_Mutation p.F329V 0.09 tolerated(1) benign(0.034) TCGA-HU-A4GH-01 2 74763252 74763252 T C LOXL3 Silent p.E373E 0.29 TCGA-HU-A4GH-01 2 8930148 8930148 A G KIDINS220 Missense_Mutation p.F495L 0.09 tolerated(0.25) benign(0.394) TCGA-HU-A4GH-01 2 96993376 96993376 A G ITPRIPL1 Missense_Mutation p.K344R 0.08 deleterious(0.02) probably_damaging(0.994) TCGA-HU-A4GH-01 2 97285260 97285260 G A KANSL3 Missense_Mutation p.R167C 0.22 deleterious(0) probably_damaging(0.994) TCGA-HU-A4GH-01 2 98846549 98846549 A G VWA3B Silent p.P729P 0.16 TCGA-HU-A4GH-01 2 99242292 99242292 A C MGAT4A Missense_Mutation p.F492C 0.08 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GH-01 2 99413927 99413927 A G KIAA1211L Silent p.T830T 0.16 TCGA-HU-A4GH-01 2 99763870 99763870 T G C2ORF15 5'UTR 0.11 TCGA-HU-A4GH-01 3 10012268 10012268 T G EMC3 Missense_Mutation p.N191T 0.22 deleterious(0.03) probably_damaging(0.989) TCGA-HU-A4GH-01 3 107491762 107491762 A C BBX Missense_Mutation p.E398D 0.17 tolerated(0.13) benign(0.003) TCGA-HU-A4GH-01 3 11885576 11885576 T C TAMM41 Missense_Mutation p.K82R 0.08 tolerated(0.31) benign(0.005) TCGA-HU-A4GH-01 3 119134116 119134116 C T ARHGAP31 Missense_Mutation p.P1114S 0.05 tolerated(0.06) benign(0.345) TCGA-HU-A4GH-01 3 122288550 122288550 T C DTX3L Silent p.A538A 0.10 TCGA-HU-A4GH-01 3 122629068 122629068 A G SEMA5B Silent p.T1180T 0.27 TCGA-HU-A4GH-01 3 123366187 123366187 T C MYLK Silent p.K1501K 0.18 TCGA-HU-A4GH-01 3 124160832 124160832 A C KALRN Missense_Mutation p.K1078T 0.29 deleterious(0) possibly_damaging(0.794) TCGA-HU-A4GH-01 3 127334796 127334796 C G MCM2 Missense_Mutation p.P507R 0.24 tolerated(0.41) probably_damaging(0.982) TCGA-HU-A4GH-01 3 129389847 129389847 T G TMCC1 Missense_Mutation p.Q279H 0.14 deleterious(0.01) probably_damaging(0.992) TCGA-HU-A4GH-01 3 130287082 130287082 T G COL6A6 Missense_Mutation p.F679V 0.30 deleterious(0) possibly_damaging(0.639) TCGA-HU-A4GH-01 3 130327795 130327795 T C COL6A6 Missense_Mutation p.L1580P 0.20 tolerated(0.06) benign(0.017) TCGA-HU-A4GH-01 3 133486878 133486878 T A TF Missense_Mutation p.F498I 0.27 deleterious(0.01) possibly_damaging(0.652) TCGA-HU-A4GH-01 3 133486889 133486889 A C TF Missense_Mutation p.E501D 0.25 deleterious(0.01) benign(0.115) TCGA-HU-A4GH-01 3 137822740 137822740 T G DZIP1L Missense_Mutation p.K25T 0.22 deleterious(0) probably_damaging(1) TCGA-HU-A4GH-01 3 140406864 140406864 A C TRIM42 Missense_Mutation p.K447T 0.10 tolerated(0.36) benign(0.347) TCGA-HU-A4GH-01 3 14172352 14172352 G C TMEM43 Missense_Mutation p.A65P 0.10 deleterious(0.05) benign(0.075) TCGA-HU-A4GH-01 3 142455271 142455271 T G TRPC1 Missense_Mutation p.L75V 0.33 tolerated(0.1) benign(0.037) TCGA-HU-A4GH-01 3 14862660 14862660 A G FGD5 Silent p.E694E 0.07 TCGA-HU-A4GH-01 3 150460122 150460122 A C SIAH2 Missense_Mutation p.F261V 0.10 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GH-01 3 15604933 15604933 G C HACL1 Missense_Mutation p.L546V 0.25 tolerated(0.08) benign(0.314) TCGA-HU-A4GH-01 3 167246946 167246946 A C WDR49 Missense_Mutation p.F415C 0.28 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GH-01 3 169557949 169557949 T G LRRC31 Missense_Mutation p.N494H 0.06 tolerated(0.05) benign(0.011) TCGA-HU-A4GH-01 3 170802031 170802031 T C TNIK Missense_Mutation p.T1028A 0.33 tolerated(0.1) probably_damaging(0.983) TCGA-HU-A4GH-01 3 171406503 171406503 T G PLD1 Missense_Mutation p.K501T 0.07 tolerated(0.33) probably_damaging(0.98) TCGA-HU-A4GH-01 3 172607259 172607259 A C SPATA16 3'UTR 0.11 TCGA-HU-A4GH-01 3 180364998 180364998 A C CCDC39 Missense_Mutation p.S466A 0.44 tolerated(0.18) benign(0.076) TCGA-HU-A4GH-01 3 186953518 186953518 T C MASP1 Missense_Mutation p.Q714R 0.27 tolerated(0.76) benign(0.016) TCGA-HU-A4GH-01 3 190326835 190326835 A C IL1RAP Missense_Mutation p.K134N 0.25 deleterious(0.01) possibly_damaging(0.892) TCGA-HU-A4GH-01 3 193081085 193081085 T G ATP13A5 Missense_Mutation p.E108D 0.26 tolerated(0.61) benign(0.006) TCGA-HU-A4GH-01 3 196234867 196234867 T A SMCO1 Missense_Mutation p.Q179L 0.20 deleterious(0.01) benign(0.344) TCGA-HU-A4GH-01 3 196234879 196234879 T G SMCO1 Missense_Mutation p.N175T 0.24 deleterious(0) probably_damaging(0.995) TCGA-HU-A4GH-01 3 20212716 20212717 - T SGOL1 Frame_Shift_Ins p.P431Tfs*2 0.21 TCGA-HU-A4GH-01 3 24164390 24164390 T G THRB Missense_Mutation p.E457D 0.14 deleterious(0.02) benign(0.154) TCGA-HU-A4GH-01 3 24206722 24206722 G C THRB Intron 0.10 TCGA-HU-A4GH-01 3 30045454 30045454 T - RBMS3 3'UTR 0.26 TCGA-HU-A4GH-01 3 32860324 32860324 C T TRIM71 Missense_Mutation p.A251V 0.23 tolerated(0.5) benign(0.017) TCGA-HU-A4GH-01 3 38519713 38519713 T C ACVR2B Missense_Mutation p.L151P 0.07 tolerated(0.07) possibly_damaging(0.594) TCGA-HU-A4GH-01 3 42742227 42742227 A G HHATL Missense_Mutation p.L31P 0.19 deleterious(0.03) benign(0.304) TCGA-HU-A4GH-01 3 44803222 44803222 G C KIF15 5'UTR 0.09 TCGA-HU-A4GH-01 3 46245656 46245656 A G CCR1 Missense_Mutation p.V50A 0.20 tolerated(0.05) benign(0.156) TCGA-HU-A4GH-01 3 47281411 47281411 A C KIF9 Intron 0.19 TCGA-HU-A4GH-01 3 47868925 47868925 A C DHX30 Missense_Mutation p.K71N 0.10 tolerated(0.14) benign(0.123) TCGA-HU-A4GH-01 3 47957952 47957952 T G MAP4 Missense_Mutation p.E455D 0.30 tolerated(0.26) benign(0.079) TCGA-HU-A4GH-01 3 49719161 49719161 T C APEH Missense_Mutation p.L482P 0.11 deleterious(0) probably_damaging(0.927) TCGA-HU-A4GH-01 3 50679760 50679760 C T MAPKAPK3 Silent p.V167V 0.37 TCGA-HU-A4GH-01 3 52406378 52406378 T G DNAH1 Missense_Mutation p.F2268V 0.20 benign(0.002) TCGA-HU-A4GH-01 3 58178383 58178383 A G DNASE1L3 3'UTR 0.10 TCGA-HU-A4GH-01 3 58381485 58381485 A C PXK Missense_Mutation p.E274A 0.11 deleterious(0) probably_damaging(0.948) TCGA-HU-A4GH-01 3 58555474 58555474 C T FAM107A Silent p.V38V 0.07 TCGA-HU-A4GH-01 3 74383939 74383939 C A CNTN3 Missense_Mutation p.G539W 0.07 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GH-01 3 74385746 74385746 A C CNTN3 Silent p.T476T 0.10 TCGA-HU-A4GH-01 3 78988071 78988071 C A ROBO1 Missense_Mutation p.R60L 0.20 deleterious(0.01) benign(0.238) TCGA-HU-A4GH-01 3 9767687 9767687 T C CPNE9 Silent p.T432T 0.14 TCGA-HU-A4GH-01 3 97887578 97887578 T G OR5H15 Missense_Mutation p.F12C 0.07 deleterious(0.01) possibly_damaging(0.491) TCGA-HU-A4GH-01 4 100463127 100463127 A G C4orf17 Missense_Mutation p.E314G 0.21 deleterious(0) probably_damaging(0.971) TCGA-HU-A4GH-01 4 103853399 103853399 T C SLC9B1 Silent p.Q237Q 0.22 TCGA-HU-A4GH-01 4 104080416 104080416 T A CENPE Silent p.V784V 0.25 TCGA-HU-A4GH-01 4 10503023 10503023 A T CLNK Missense_Mutation p.L333M 0.25 deleterious(0) probably_damaging(1) TCGA-HU-A4GH-01 4 106861764 106861764 G A NPNT Missense_Mutation p.G275E 0.19 deleterious(0) probably_damaging(0.997) TCGA-HU-A4GH-01 4 115760617 115760617 T G NDST4 Missense_Mutation p.K735Q 0.04 tolerated(0.08) benign(0.005) TCGA-HU-A4GH-01 4 118006675 118006675 G T TRAM1L1 5'UTR 0.60 TCGA-HU-A4GH-01 4 119951710 119951710 G A SYNPO2 Missense_Mutation p.G594R 0.23 deleterious(0) probably_damaging(1) TCGA-HU-A4GH-01 4 138452673 138452673 A T PCDH18 Silent p.T190T 0.61 TCGA-HU-A4GH-01 4 141334238 141334238 T G CLGN 5'UTR 0.31 TCGA-HU-A4GH-01 4 141870500 141870500 T C RNF150 Silent p.K254K 0.05 TCGA-HU-A4GH-01 4 144801595 144801595 G T GYPE Silent p.V35V 0.18 TCGA-HU-A4GH-01 4 153690741 153690741 T G TIGD4 Missense_Mutation p.K472N 0.25 tolerated(0.12) benign(0.101) TCGA-HU-A4GH-01 4 15443895 15443895 A C C1QTNF7 Missense_Mutation p.E121D 0.12 tolerated(0.67) benign(0.001) TCGA-HU-A4GH-01 4 154505988 154505988 A T KIAA0922 Silent p.A354A 0.17 TCGA-HU-A4GH-01 4 155719202 155719202 T G RBM46 Missense_Mutation p.F131V 0.26 deleterious(0.03) probably_damaging(0.943) TCGA-HU-A4GH-01 4 159790415 159790415 A C FNIP2 Missense_Mutation p.N876T 0.08 tolerated(0.25) benign(0.005) TCGA-HU-A4GH-01 4 165890685 165890685 A C TRIM61 Missense_Mutation p.L157R 0.15 tolerated(0.58) benign(0.001) TCGA-HU-A4GH-01 4 170628052 170628052 T G CLCN3 Missense_Mutation p.V595G 0.17 deleterious(0.01) benign(0.006) TCGA-HU-A4GH-01 4 170912682 170912682 A C MFAP3L Silent p.P359P 0.21 TCGA-HU-A4GH-01 4 178274525 178274525 A G NEIL3 Missense_Mutation p.N368S 0.17 deleterious(0.03) possibly_damaging(0.521) TCGA-HU-A4GH-01 4 184166637 184166637 A C WWC2 Missense_Mutation p.E224A 0.07 deleterious(0) probably_damaging(0.997) TCGA-HU-A4GH-01 4 187117203 187117203 A T CYP4V2 Missense_Mutation p.K125M 0.19 deleterious(0.01) possibly_damaging(0.897) TCGA-HU-A4GH-01 4 189012793 189012793 A G TRIML2 Missense_Mutation p.W300R 0.04 tolerated(0.12) benign(0.042) TCGA-HU-A4GH-01 4 25674816 25674816 A T SLC34A2 Missense_Mutation p.I386F 0.07 deleterious(0.02) benign(0.053) TCGA-HU-A4GH-01 4 2964964 2964964 T G NOP14 Missense_Mutation p.N28T 0.15 tolerated(0.39) possibly_damaging(0.45) TCGA-HU-A4GH-01 4 3318489 3318489 G A RGS12 Missense_Mutation p.E198K 0.05 deleterious(0.04) probably_damaging(0.997) TCGA-HU-A4GH-01 4 38138919 38138919 A T TBC1D1 Missense_Mutation p.E1157V 0.09 tolerated_low_confidence(0.19) benign(0.135) TCGA-HU-A4GH-01 4 40762498 40762498 A C NSUN7 Missense_Mutation p.S116R 0.18 deleterious(0.04) benign(0.146) TCGA-HU-A4GH-01 4 53731608 53731608 T A RASL11B Missense_Mutation p.L128H 0.21 tolerated(0.31) possibly_damaging(0.451) TCGA-HU-A4GH-01 4 57522115 57522115 C T HOPX Missense_Mutation p.E36K 0.16 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-HU-A4GH-01 4 5853180 5853180 T C CRMP1 Silent p.Q279Q 0.07 TCGA-HU-A4GH-01 4 76571575 76571575 C G G3BP2 Missense_Mutation p.G375R 0.06 deleterious(0) probably_damaging(1) TCGA-HU-A4GH-01 4 77292583 77292583 A C CCDC158 Missense_Mutation p.L379R 0.31 deleterious(0) probably_damaging(0.996) TCGA-HU-A4GH-01 4 77941688 77941688 T C SEPT11 Missense_Mutation p.L273P 0.08 deleterious(0) probably_damaging(1) TCGA-HU-A4GH-01 4 7802299 7802299 T C AFAP1 Missense_Mutation p.D379G 0.21 deleterious(0) probably_damaging(0.996) TCGA-HU-A4GH-01 4 79394700 79394700 G C FRAS1 Missense_Mutation p.S2544T 0.07 benign(0.028) TCGA-HU-A4GH-01 4 79437061 79437061 T C FRAS1 Missense_Mutation p.L3428P 0.08 probably_damaging(0.992) TCGA-HU-A4GH-01 4 81967099 81967099 A C BMP3 Missense_Mutation p.N175T 0.29 tolerated(0.17) probably_damaging(0.968) TCGA-HU-A4GH-01 5 10397414 10397414 T G MARCH6 Missense_Mutation p.F291V 0.16 deleterious(0) probably_damaging(0.96) TCGA-HU-A4GH-01 5 11117639 11117639 T A CTNND2 Nonsense_Mutation p.R734* 0.17 TCGA-HU-A4GH-01 5 115822533 115822533 A T SEMA6A Missense_Mutation p.Y292N 0.05 deleterious(0) probably_damaging(1) TCGA-HU-A4GH-01 5 127448545 127448545 A G SLC12A2 Missense_Mutation p.T266A 0.25 tolerated(0.31) possibly_damaging(0.728) TCGA-HU-A4GH-01 5 132534760 132534760 T G FSTL4 3'UTR 0.33 TCGA-HU-A4GH-01 5 137762680 137762680 A C KDM3B Missense_Mutation p.E1476D 0.26 tolerated(0.28) benign(0.003) TCGA-HU-A4GH-01 5 140236835 140236835 A C PCDHA10 Missense_Mutation p.K401T 0.29 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-HU-A4GH-01 5 140237019 140237019 C T PCDHA10 Silent p.F462F 0.26 TCGA-HU-A4GH-01 5 140248808 140248808 A C PCDHA11 Missense_Mutation p.K40N 0.30 deleterious_low_confidence(0) probably_damaging(0.946) TCGA-HU-A4GH-01 5 140563353 140563353 A G PCDHB16 Missense_Mutation p.R407G 0.13 tolerated_low_confidence(1) benign(0.001) TCGA-HU-A4GH-01 5 140768378 140768378 A C PCDHGB4 Missense_Mutation p.E309D 0.36 tolerated(0.31) benign(0.029) TCGA-HU-A4GH-01 5 149457791 149457791 A C CSF1R Missense_Mutation p.L205V 0.14 tolerated(1) benign(0.005) TCGA-HU-A4GH-01 5 150867825 150867825 T G SLC36A1 3'UTR 0.13 TCGA-HU-A4GH-01 5 150922922 150922922 T G FAT2 Missense_Mutation p.E2589A 0.05 benign(0.297) TCGA-HU-A4GH-01 5 150948213 150948213 A C FAT2 Missense_Mutation p.F94V 0.30 probably_damaging(0.999) TCGA-HU-A4GH-01 5 154394999 154394999 T C KIF4B Missense_Mutation p.V527A 0.11 tolerated(0.49) benign(0.004) TCGA-HU-A4GH-01 5 156752563 156752563 A T CYFIP2 Silent p.R607R 0.34 TCGA-HU-A4GH-01 5 169141079 169141079 T G DOCK2 Silent p.P569P 0.33 TCGA-HU-A4GH-01 5 169810813 169810813 T G KCNMB1 Missense_Mutation p.N59T 0.35 tolerated(0.61) benign(0.009) TCGA-HU-A4GH-01 5 171638907 171638907 T A UBTD2 Missense_Mutation p.K211M 0.33 deleterious(0) possibly_damaging(0.905) TCGA-HU-A4GH-01 5 178505885 178505885 A T ZNF354C Missense_Mutation p.E151V 0.26 tolerated(0.05) benign(0.055) TCGA-HU-A4GH-01 5 35066132 35066132 A G PRLR Silent p.L310L 0.28 TCGA-HU-A4GH-01 5 35876392 35876392 A C IL7R Missense_Mutation p.K395T 0.19 tolerated(0.46) benign(0.014) TCGA-HU-A4GH-01 5 36035765 36035765 C T UGT3A2 3'UTR 0.08 TCGA-HU-A4GH-01 5 37173971 37173971 T G C5orf42 Missense_Mutation p.Q2019H 0.16 tolerated(0.1) possibly_damaging(0.735) TCGA-HU-A4GH-01 5 5146481 5146481 T G ADAMTS16 Silent p.T138T 0.06 TCGA-HU-A4GH-01 5 6611109 6611109 C T NSUN2 Silent p.P395P 0.08 TCGA-HU-A4GH-01 5 68692326 68692326 A C RAD17 Missense_Mutation p.S520R 0.34 deleterious(0) benign(0.026) TCGA-HU-A4GH-01 5 71494245 71494245 A C MAP1B Missense_Mutation p.D1688A 0.11 probably_damaging(0.998) TCGA-HU-A4GH-01 5 75757491 75757491 A G IQGAP2 Missense_Mutation p.K48R 0.25 deleterious(0) probably_damaging(0.98) TCGA-HU-A4GH-01 5 76732183 76732183 T G WDR41 Missense_Mutation p.K377T 0.10 deleterious(0) possibly_damaging(0.881) TCGA-HU-A4GH-01 5 80738511 80738511 A C SSBP2 Silent p.T270T 0.35 TCGA-HU-A4GH-01 5 89948273 89948273 T C GPR98 Missense_Mutation p.V1176A 0.27 possibly_damaging(0.539) TCGA-HU-A4GH-01 5 89986632 89986632 T G GPR98 Missense_Mutation p.L2242R 0.50 benign(0.338) TCGA-HU-A4GH-01 5 93300165 93300165 G A FAM172A Missense_Mutation p.P125S 0.27 deleterious(0) probably_damaging(0.975) TCGA-HU-A4GH-01 5 96364142 96364142 T G LNPEP Missense_Mutation p.F995V 0.06 tolerated(0.13) benign(0.102) TCGA-HU-A4GH-01 6 105526475 105526475 T C LIN28B Silent p.T190T 0.13 TCGA-HU-A4GH-01 6 105609491 105609491 T G POPDC3 Missense_Mutation p.Q98H 0.21 deleterious(0) probably_damaging(0.931) TCGA-HU-A4GH-01 6 109294766 109294766 T G ARMC2 3'UTR 0.12 TCGA-HU-A4GH-01 6 110734556 110734556 T G DDO Missense_Mutation p.K65T 0.09 deleterious(0.04) benign(0.127) TCGA-HU-A4GH-01 6 112460474 112460474 G T LAMA4 Missense_Mutation p.Q1044K 0.22 tolerated(0.08) probably_damaging(0.993) TCGA-HU-A4GH-01 6 117232144 117232144 T G RFX6 Missense_Mutation p.L240R 0.19 deleterious(0.02) probably_damaging(1) TCGA-HU-A4GH-01 6 117240445 117240445 T G RFX6 Missense_Mutation p.L390V 0.23 tolerated(0.13) possibly_damaging(0.573) TCGA-HU-A4GH-01 6 129748963 129748963 C A LAMA2 Missense_Mutation p.L1978I 0.25 deleterious(0.01) possibly_damaging(0.698) TCGA-HU-A4GH-01 6 132047242 132047242 A G ENPP3 Missense_Mutation p.N619D 0.22 tolerated(0.4) benign(0.019) TCGA-HU-A4GH-01 6 132910580 132910580 A G TAAR5 Silent p.F82F 0.06 TCGA-HU-A4GH-01 6 133015209 133015209 A C VNN1 Missense_Mutation p.C152G 0.07 deleterious(0) probably_damaging(1) TCGA-HU-A4GH-01 6 135287535 135287535 A C HBS1L Missense_Mutation p.F659V 0.12 tolerated(0.16) probably_damaging(0.93) TCGA-HU-A4GH-01 6 137187842 137187842 T G PEX7 Missense_Mutation p.L202V 0.24 deleterious(0) probably_damaging(0.986) TCGA-HU-A4GH-01 6 138576856 138576856 C T KIAA1244 Missense_Mutation p.L352F 0.25 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GH-01 6 145948408 145948408 A C EPM2A 3'UTR 0.20 TCGA-HU-A4GH-01 6 149901803 149901803 T G GINM1 Missense_Mutation p.L221V 0.25 tolerated(0.08) possibly_damaging(0.623) TCGA-HU-A4GH-01 6 152719782 152719782 A C SYNE1 Missense_Mutation p.V2441G 0.17 benign(0.089) TCGA-HU-A4GH-01 6 152793444 152793444 C T SYNE1 Missense_Mutation p.M485I 0.07 possibly_damaging(0.512) TCGA-HU-A4GH-01 6 155500529 155500529 A C TIAM2 Missense_Mutation p.E882D 0.04 deleterious(0.01) benign(0.314) TCGA-HU-A4GH-01 6 158515004 158515004 A G SYNJ2 Intron 0.05 TCGA-HU-A4GH-01 6 159205739 159205739 A C EZR Missense_Mutation p.L163R 0.10 deleterious(0) probably_damaging(0.989) TCGA-HU-A4GH-01 6 161007491 161007491 A C LPA Silent p.P1373P 0.14 TCGA-HU-A4GH-01 6 168999540 168999540 C T SMOC2 Missense_Mutation p.A238V 0.09 tolerated(0.06) benign(0.098) TCGA-HU-A4GH-01 6 168999604 168999604 A G SMOC2 Silent p.P259P 0.08 TCGA-HU-A4GH-01 6 24596784 24596784 A C KIAA0319 Missense_Mutation p.L40V 0.19 tolerated(0.08) probably_damaging(0.913) TCGA-HU-A4GH-01 6 29274471 29274471 T G OR14J1 Missense_Mutation p.V2G 0.37 tolerated(0.2) benign(0.001) TCGA-HU-A4GH-01 6 29555920 29555920 T G OR2H2 Missense_Mutation p.L67V 0.26 tolerated(0.1) possibly_damaging(0.692) TCGA-HU-A4GH-01 6 29581264 29581264 T A GABBR1 Splice_Site p.X442_splice 0.08 TCGA-HU-A4GH-01 6 30039131 30039131 G A RNF39 Silent p.R340R 0.44 TCGA-HU-A4GH-01 6 30529893 30529893 T C PRR3 Missense_Mutation p.V151A 0.13 tolerated_low_confidence(0.06) benign(0.001) TCGA-HU-A4GH-01 6 30545225 30545225 A C ABCF1 Missense_Mutation p.K38T 0.25 deleterious_low_confidence(0.01) probably_damaging(0.913) TCGA-HU-A4GH-01 6 30627593 30627593 A G DHX16 Silent p.L592L 0.07 TCGA-HU-A4GH-01 6 31747777 31747777 A G VARS Silent p.L1027L 0.24 TCGA-HU-A4GH-01 6 31779492 31779492 T C HSPA1L Silent p.Q86Q 0.06 TCGA-HU-A4GH-01 6 32159496 32159496 A T GPSM3 Missense_Mutation p.L112H 0.10 deleterious(0) probably_damaging(0.996) TCGA-HU-A4GH-01 6 33662849 33662849 A G ITPR3 Missense_Mutation p.E2645G 0.17 deleterious(0) probably_damaging(0.96) TCGA-HU-A4GH-01 6 34059816 34059816 A C GRM4 Missense_Mutation p.F194V 0.11 deleterious(0) possibly_damaging(0.664) TCGA-HU-A4GH-01 6 34846436 34846436 T G TAF11 Missense_Mutation p.E189D 0.07 deleterious(0) probably_damaging(1) TCGA-HU-A4GH-01 6 350967 350967 G A DUSP22 3'UTR 0.17 TCGA-HU-A4GH-01 6 42823647 42823647 A C GLTSCR1L Missense_Mutation p.K700N 0.09 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GH-01 6 43163991 43163991 T C CUL9 Missense_Mutation p.L858P 0.08 deleterious(0) probably_damaging(0.996) TCGA-HU-A4GH-01 6 43193469 43193469 A C DNPH1 3'UTR 0.10 TCGA-HU-A4GH-01 6 43488378 43488378 A C POLR1C Missense_Mutation p.K224T 0.10 deleterious(0) probably_damaging(1) TCGA-HU-A4GH-01 6 44392215 44392215 T C CDC5L Silent p.N488N 0.57 TCGA-HU-A4GH-01 6 46563772 46563772 T G CYP39A1 Missense_Mutation p.K339N 0.15 deleterious(0.01) benign(0.04) TCGA-HU-A4GH-01 6 49754349 49754349 T G PGK2 Missense_Mutation p.K184N 0.08 deleterious(0) possibly_damaging(0.707) TCGA-HU-A4GH-01 6 50011385 50011385 C A DEFB112 Missense_Mutation p.C82F 0.29 deleterious(0) possibly_damaging(0.639) TCGA-HU-A4GH-01 6 52657694 52657694 T C GSTA1 Missense_Mutation p.E169G 0.05 deleterious(0.02) probably_damaging(0.999) TCGA-HU-A4GH-01 6 564622 564622 T G EXOC2 Missense_Mutation p.E530D 0.09 tolerated(0.29) benign(0) TCGA-HU-A4GH-01 6 69640552 69640552 G A BAI3 Missense_Mutation p.A287T 0.37 tolerated(0.1) benign(0.045) TCGA-HU-A4GH-01 6 80196883 80196883 T G LCA5 Missense_Mutation p.K644N 0.32 tolerated(0.1) benign(0.406) TCGA-HU-A4GH-01 7 100681013 100681013 A C MUC17 Missense_Mutation p.S2106R 0.10 unknown(0) TCGA-HU-A4GH-01 7 100684288 100684288 T G MUC17 Silent p.T3197T 0.09 TCGA-HU-A4GH-01 7 105615425 105615425 A G CDHR3 Missense_Mutation p.Q61R 0.05 tolerated(0.11) benign(0.04) TCGA-HU-A4GH-01 7 111161449 111161449 A G IMMP2L Missense_Mutation p.F19L 0.38 tolerated(0.8) benign(0.182) TCGA-HU-A4GH-01 7 113559001 113559001 T G PPP1R3A Missense_Mutation p.E17D 0.13 deleterious(0.04) benign(0.216) TCGA-HU-A4GH-01 7 116955197 116955197 C A WNT2 Silent p.V172V 0.13 TCGA-HU-A4GH-01 7 121650657 121650657 T A PTPRZ1 Silent p.T519T 0.31 TCGA-HU-A4GH-01 7 133884171 133884171 C T LRGUK Missense_Mutation p.A582V 0.26 tolerated(0.11) benign(0.259) TCGA-HU-A4GH-01 7 138602902 138602902 G A KIAA1549 Silent p.I490I 0.15 TCGA-HU-A4GH-01 7 138603717 138603717 G C KIAA1549 Missense_Mutation p.P219A 0.07 tolerated(0.18) benign(0.012) TCGA-HU-A4GH-01 7 139719948 139719948 A C TBXAS1 3'UTR 0.20 TCGA-HU-A4GH-01 7 140378991 140378991 T G ADCK2 Missense_Mutation p.F373V 0.28 deleterious(0) probably_damaging(1) TCGA-HU-A4GH-01 7 140494168 140494168 T C BRAF Silent p.R360R 0.14 TCGA-HU-A4GH-01 7 142378947 142378947 A C MTRNR2L6 3'Flank 0.05 TCGA-HU-A4GH-01 7 142423641 142423641 G A TRBV27 Silent p.S99S 0.10 TCGA-HU-A4GH-01 7 142723730 142723730 A C OR9A2 Missense_Mutation p.F164V 0.07 deleterious(0) possibly_damaging(0.864) TCGA-HU-A4GH-01 7 148484124 148484124 A C CUL1 Missense_Mutation p.K464T 0.10 tolerated(0.14) possibly_damaging(0.489) TCGA-HU-A4GH-01 7 150217038 150217038 A C GIMAP7 5'UTR 0.44 TCGA-HU-A4GH-01 7 150761422 150761422 C T SLC4A2 Missense_Mutation p.P62L 0.38 tolerated_low_confidence(0.6) benign(0) TCGA-HU-A4GH-01 7 21628926 21628926 A C DNAH11 Missense_Mutation p.S692R 0.32 benign(0.005) TCGA-HU-A4GH-01 7 23015837 23015837 A G FAM126A Silent p.I206I 0.10 TCGA-HU-A4GH-01 7 23545857 23545857 C T TRA2A Missense_Mutation p.G224S 0.16 tolerated_low_confidence(0.46) unknown(0) TCGA-HU-A4GH-01 7 31912981 31912981 T A PDE1C Missense_Mutation p.E238V 0.18 deleterious(0.02) benign(0.375) TCGA-HU-A4GH-01 7 35289646 35289646 T G TBX20 Missense_Mutation p.K99N 0.16 tolerated(0.6) benign(0.013) TCGA-HU-A4GH-01 7 36917661 36917661 T C ELMO1 Silent p.E592E 0.09 TCGA-HU-A4GH-01 7 37889886 37889886 A G NME8 Silent p.R6R 0.07 TCGA-HU-A4GH-01 7 38288920 38288920 T G TRGC2 Missense_Mutation p.E85D 0.21 tolerated(0.08) benign(0.093) TCGA-HU-A4GH-01 7 40134436 40134436 T G CDK13 Missense_Mutation p.L1466V 0.07 tolerated_low_confidence(0.35) probably_damaging(0.985) TCGA-HU-A4GH-01 7 43546793 43546793 A C HECW1 Missense_Mutation p.K1230T 0.32 deleterious(0.03) possibly_damaging(0.883) TCGA-HU-A4GH-01 7 47852835 47852835 T G PKD1L1 Missense_Mutation p.E2410D 0.15 tolerated(0.52) benign(0.002) TCGA-HU-A4GH-01 7 6026456 6026456 T G PMS2 Missense_Mutation p.K647T 0.21 deleterious(0.01) possibly_damaging(0.675) TCGA-HU-A4GH-01 7 72658412 72658412 A C GTF2IRD2P1 RNA 0.11 TCGA-HU-A4GH-01 7 76241096 76241096 G A POMZP3 Missense_Mutation p.A127V 0.09 tolerated_low_confidence(0.21) possibly_damaging(0.53) TCGA-HU-A4GH-01 7 77221537 77221537 A G PTPN12 Silent p.E152E 0.08 TCGA-HU-A4GH-01 7 77569864 77569864 T G PHTF2 Missense_Mutation p.L553R 0.15 deleterious(0) probably_damaging(0.994) TCGA-HU-A4GH-01 7 82764843 82764843 A C PCLO Missense_Mutation p.S675A 0.23 unknown(0) TCGA-HU-A4GH-01 7 99654558 99654558 T C ZSCAN21 5'UTR 0.10 TCGA-HU-A4GH-01 7 99999537 99999537 T C ZCWPW1 Silent p.Q533Q 0.22 TCGA-HU-A4GH-01 8 101059816 101059816 T G RGS22 Missense_Mutation p.E566D 0.23 tolerated(0.31) benign(0.025) TCGA-HU-A4GH-01 8 101624261 101624261 T G SNX31 Missense_Mutation p.E193A 0.07 deleterious(0.05) benign(0.211) TCGA-HU-A4GH-01 8 101624268 101624268 T C SNX31 Missense_Mutation p.S191G 0.17 deleterious(0) benign(0.201) TCGA-HU-A4GH-01 8 11414188 11414188 A G BLK Missense_Mutation p.K265R 0.10 tolerated(0.14) probably_damaging(0.945) TCGA-HU-A4GH-01 8 120079640 120079643 CACA - COLEC10 Frame_Shift_Del p.H42Qfs*100 0.27 TCGA-HU-A4GH-01 8 120650688 120650688 C T ENPP2 Missense_Mutation p.G38E 0.10 tolerated(1) benign(0.007) TCGA-HU-A4GH-01 8 121238870 121238870 A C COL14A1 Missense_Mutation p.E623D 0.22 tolerated(0.5) benign(0.003) TCGA-HU-A4GH-01 8 121259915 121259915 C T COL14A1 Missense_Mutation p.T848M 0.39 deleterious(0) possibly_damaging(0.861) TCGA-HU-A4GH-01 8 122626360 122626360 G A HAS2 Missense_Mutation p.L550F 0.08 tolerated_low_confidence(0.6) probably_damaging(0.969) TCGA-HU-A4GH-01 8 123964340 123964340 A G ZHX2 Missense_Mutation p.K197R 0.21 tolerated(0.07) benign(0.036) TCGA-HU-A4GH-01 8 133925381 133925381 T G TG Missense_Mutation p.F1417V 0.13 deleterious(0.01) probably_damaging(0.962) TCGA-HU-A4GH-01 8 134072452 134072452 T G SLA Missense_Mutation p.Y25S 0.13 tolerated_low_confidence(0.09) benign(0.052) TCGA-HU-A4GH-01 8 135649941 135649941 T G ZFAT Missense_Mutation p.K71Q 0.12 deleterious(0) probably_damaging(0.959) TCGA-HU-A4GH-01 8 139767741 139767741 C A COL22A1 Missense_Mutation p.G654V 0.14 unknown(0) TCGA-HU-A4GH-01 8 140631195 140631195 T G KCNK9 Missense_Mutation p.K144T 0.12 deleterious(0) probably_damaging(0.917) TCGA-HU-A4GH-01 8 145559797 145559797 A C SCRT1 Missense_Mutation p.L12R 0.17 deleterious(0.01) possibly_damaging(0.734) TCGA-HU-A4GH-01 8 145665443 145665443 C T TONSL Missense_Mutation p.E481K 0.11 tolerated(0.14) benign(0.001) TCGA-HU-A4GH-01 8 1497566 1497566 A C DLGAP2 Missense_Mutation p.N236T 0.04 tolerated(0.5) benign(0.007) TCGA-HU-A4GH-01 8 17611800 17611800 T A MTUS1 Missense_Mutation p.N506I 0.05 deleterious(0) probably_damaging(0.991) TCGA-HU-A4GH-01 8 19810899 19810899 A C LPL Missense_Mutation p.S170R 0.08 deleterious(0.02) possibly_damaging(0.885) TCGA-HU-A4GH-01 8 19818548 19818548 T C LPL Missense_Mutation p.F426L 0.09 tolerated(1) benign(0.044) TCGA-HU-A4GH-01 8 22273409 22273409 A G SLC39A14 Missense_Mutation p.E293G 0.07 tolerated(0.13) benign(0.392) TCGA-HU-A4GH-01 8 24350015 24350015 A T ADAM7 Silent p.I520I 0.13 TCGA-HU-A4GH-01 8 26221361 26221361 A T PPP2R2A Missense_Mutation p.K319N 0.08 deleterious(0.01) probably_damaging(0.98) TCGA-HU-A4GH-01 8 30623750 30623750 T G UBXN8 RNA 0.22 TCGA-HU-A4GH-01 8 59750826 59750826 T G TOX Missense_Mutation p.K246N 0.15 deleterious(0) probably_damaging(0.977) TCGA-HU-A4GH-01 8 67808561 67808561 T G MCMDC2 Missense_Mutation p.I479S 0.22 deleterious(0) possibly_damaging(0.504) TCGA-HU-A4GH-01 8 69069659 69069659 A C PREX2 Missense_Mutation p.N1445T 0.12 deleterious(0.02) benign(0.098) TCGA-HU-A4GH-01 8 72946061 72946061 C T TRPA1 Missense_Mutation p.D896N 0.27 tolerated(0.21) possibly_damaging(0.803) TCGA-HU-A4GH-01 8 8234739 8234739 C T SGK223 Missense_Mutation p.E394K 0.12 probably_damaging(0.98) TCGA-HU-A4GH-01 8 86041521 86041521 A G LRRCC1 Silent p.K511K 0.13 TCGA-HU-A4GH-01 8 87125995 87125995 A C ATP6V0D2 Missense_Mutation p.N63T 0.27 tolerated(0.17) benign(0.001) TCGA-HU-A4GH-01 8 88365898 88365898 T G CNBD1 Missense_Mutation p.L396R 0.25 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GH-01 8 94822056 94822056 T A TMEM67 Missense_Mutation p.L902H 0.19 deleterious(0) probably_damaging(0.975) TCGA-HU-A4GH-01 8 95264363 95264363 T C GEM Missense_Mutation p.E166G 0.09 deleterious(0.01) possibly_damaging(0.893) TCGA-HU-A4GH-01 8 95501040 95501040 A G KIAA1429 Missense_Mutation p.L1778P 0.09 tolerated(0.34) possibly_damaging(0.667) TCGA-HU-A4GH-01 8 98288694 98288694 T G TSPYL5 3'UTR 0.38 TCGA-HU-A4GH-01 8 99101485 99101485 A T C8orf47 Missense_Mutation p.Q80H 0.05 tolerated(0.71) benign(0.001) TCGA-HU-A4GH-01 9 104433060 104433060 T G GRIN3A Missense_Mutation p.D545A 0.33 tolerated(0.14) benign(0.354) TCGA-HU-A4GH-01 9 1056580 1056580 T C DMRT2 Silent p.T331T 0.20 TCGA-HU-A4GH-01 9 114124385 114124385 A G KIAA0368 Silent p.T1993T 0.11 TCGA-HU-A4GH-01 9 125289162 125289162 T G OR1N1 Missense_Mutation p.Q137H 0.09 tolerated(0.11) benign(0.005) TCGA-HU-A4GH-01 9 125423888 125423888 T A OR1L1 5'Flank 0.18 TCGA-HU-A4GH-01 9 125486878 125486878 A T OR1L4 Missense_Mutation p.T204S 0.24 tolerated(0.06) benign(0.124) TCGA-HU-A4GH-01 9 128003292 128003292 G T HSPA5 Silent p.T38T 0.36 TCGA-HU-A4GH-01 9 131017030 131017030 A T DNM1 3'UTR 0.07 TCGA-HU-A4GH-01 9 131757652 131757652 A C NUP188 Missense_Mutation p.K1070N 0.07 tolerated(0.49) benign(0.276) TCGA-HU-A4GH-01 9 135277028 135277028 A C TTF1 Missense_Mutation p.L394R 0.15 tolerated(1) benign(0.001) TCGA-HU-A4GH-01 9 136508598 136508598 G A DBH Missense_Mutation p.A270T 0.69 tolerated(0.17) benign(0.021) TCGA-HU-A4GH-01 9 140150786 140150786 A G NELFB Missense_Mutation p.K91R 0.05 tolerated(0.22) benign(0.004) TCGA-HU-A4GH-01 9 140328872 140328872 A C ENTPD8 3'UTR 0.07 TCGA-HU-A4GH-01 9 140441764 140441764 A C PNPLA7 Missense_Mutation p.F64V 0.05 tolerated(0.51) benign(0.001) TCGA-HU-A4GH-01 9 19093208 19093208 T G HAUS6 Silent p.R133R 0.36 TCGA-HU-A4GH-01 9 21304715 21304715 A G IFNA5 Silent p.L181L 0.18 TCGA-HU-A4GH-01 9 32634227 32634227 T G TAF1L Missense_Mutation p.S451R 0.21 tolerated(0.3) benign(0.007) TCGA-HU-A4GH-01 9 33385038 33385038 G C AQP7 Missense_Mutation p.P332A 0.05 tolerated_low_confidence(0.14) benign(0.002) TCGA-HU-A4GH-01 9 34500839 34500839 T G DNAI1 Splice_Site p.X340_splice 0.18 TCGA-HU-A4GH-01 9 35310525 35310525 A T UNC13B Missense_Mutation p.S275C 0.09 deleterious_low_confidence(0) possibly_damaging(0.707) TCGA-HU-A4GH-01 9 35716443 35716443 A C TLN1 Missense_Mutation p.L857V 0.10 deleterious(0.01) probably_damaging(0.978) TCGA-HU-A4GH-01 9 37861498 37861498 A C DCAF10 Missense_Mutation p.K558T 0.09 deleterious(0.01) benign(0.157) TCGA-HU-A4GH-01 9 37887778 37887778 A C SLC25A51 Missense_Mutation p.I257S 0.11 deleterious(0) possibly_damaging(0.47) TCGA-HU-A4GH-01 9 79890551 79890551 A C VPS13A Silent p.R884R 0.37 TCGA-HU-A4GH-01 9 84532534 84532534 T G SPATA31D5P RNA 0.40 TCGA-HU-A4GH-01 9 8465495 8465495 C T PTPRD Missense_Mutation p.V1229M 0.16 deleterious(0) possibly_damaging(0.581) TCGA-HU-A4GH-01 9 8504266 8504266 T C PTPRD Missense_Mutation p.Q606R 0.09 deleterious(0.01) probably_damaging(0.956) TCGA-HU-A4GH-01 9 88842926 88842926 C T C9orf153 Missense_Mutation p.C29Y 0.33 tolerated(0.21) possibly_damaging(0.452) TCGA-HU-A4GH-01 9 96860695 96860695 A C PTPDC1 Missense_Mutation p.E614A 0.07 tolerated(0.16) benign(0.001) TCGA-HU-A4GH-01 9 99325055 99325055 A C CDC14B Missense_Mutation p.L114V 0.31 tolerated(0.26) benign(0) TCGA-HU-A4GH-01 9 99800269 99800269 T C CTSV Silent p.P19P 0.30 TCGA-HU-A4GH-01 X 101098169 101098169 A C NXF5 5'UTR 0.33 TCGA-HU-A4GH-01 X 10176510 10176510 T G CLCN4 Silent p.T423T 0.12 TCGA-HU-A4GH-01 X 103268024 103268024 C T H2BFWT Missense_Mutation p.R70H 0.21 tolerated(0.09) benign(0.001) TCGA-HU-A4GH-01 X 109937440 109937440 T A CHRDL1 Silent p.S243S 0.35 TCGA-HU-A4GH-01 X 122387364 122387364 A C GRIA3 Missense_Mutation p.K160T 0.05 deleterious(0.03) benign(0.436) TCGA-HU-A4GH-01 X 122801084 122801084 T C THOC2 Missense_Mutation p.I355V 0.22 tolerated(0.56) benign(0.002) TCGA-HU-A4GH-01 X 123654414 123654414 T G TENM1 Missense_Mutation p.K1085T 0.08 deleterious(0) possibly_damaging(0.758) TCGA-HU-A4GH-01 X 129055486 129055486 T G UTP14A Missense_Mutation p.F424C 0.15 deleterious(0.03) benign(0.072) TCGA-HU-A4GH-01 X 131540287 131540287 A G MBNL3 Missense_Mutation p.L104P 0.13 tolerated(0.16) possibly_damaging(0.667) TCGA-HU-A4GH-01 X 132888059 132888059 A T GPC3 Missense_Mutation p.I161N 0.45 tolerated(0.06) benign(0.099) TCGA-HU-A4GH-01 X 133700438 133700438 A C PLAC1 Missense_Mutation p.V92G 0.36 deleterious(0) possibly_damaging(0.875) TCGA-HU-A4GH-01 X 136113511 136113511 A C GPR101 Missense_Mutation p.V108G 0.42 deleterious(0) possibly_damaging(0.887) TCGA-HU-A4GH-01 X 144904311 144904311 A G SLITRK2 Missense_Mutation p.E123G 0.48 deleterious(0) probably_damaging(0.99) TCGA-HU-A4GH-01 X 146295015 146295015 C T MIR513A1 RNA 0.09 TCGA-HU-A4GH-01 X 152915040 152915040 T G DUSP9 Missense_Mutation p.F243V 0.40 tolerated(0.2) benign(0) TCGA-HU-A4GH-01 X 154157811 154157811 A C F8 Missense_Mutation p.I1418M 0.13 deleterious(0.03) possibly_damaging(0.472) TCGA-HU-A4GH-01 X 154490053 154490053 A C RAB39B 3'UTR 0.05 TCGA-HU-A4GH-01 X 18238886 18238886 T C BEND2 5'UTR 0.39 TCGA-HU-A4GH-01 X 19935226 19935226 T G CXorf23 3'UTR 0.19 TCGA-HU-A4GH-01 X 3240744 3240744 T C MXRA5 Silent p.K994K 0.38 TCGA-HU-A4GH-01 X 32834689 32834689 G C DMD Missense_Mutation p.S142R 0.13 probably_damaging(0.97) TCGA-HU-A4GH-01 X 34148076 34148076 G A FAM47A Missense_Mutation p.R774C 0.27 deleterious(0) probably_damaging(0.953) TCGA-HU-A4GH-01 X 37586943 37586943 A C XK Missense_Mutation p.N188T 0.28 tolerated(0.08) possibly_damaging(0.836) TCGA-HU-A4GH-01 X 37660536 37660536 T G CYBB Missense_Mutation p.F278V 0.32 tolerated(1) benign(0.001) TCGA-HU-A4GH-01 X 41587063 41587063 T C GPR82 Missense_Mutation p.F262L 0.15 tolerated(0.19) possibly_damaging(0.52) TCGA-HU-A4GH-01 X 43591072 43591072 T G MAOA Nonsense_Mutation p.Y309* 0.07 TCGA-HU-A4GH-01 X 46713334 46713334 G A RP2 Missense_Mutation p.D176N 0.88 deleterious(0) probably_damaging(0.993) TCGA-HU-A4GH-01 X 52677333 52677333 A G SSX7 Silent p.S148S 0.10 TCGA-HU-A4GH-01 X 53455348 53455348 A C RIBC1 Missense_Mutation p.K106T 0.17 tolerated(0.06) possibly_damaging(0.776) TCGA-HU-A4GH-01 X 73063677 73063677 T G XIST RNA 0.31 TCGA-HU-A4GH-01 X 73071560 73071560 T G XIST RNA 0.28 TCGA-HU-A4GH-01 X 76711973 76711973 A C FGF16 Missense_Mutation p.K104T 0.36 benign(0.146) TCGA-HU-A4GH-01 X 78011340 78011340 A C LPAR4 Missense_Mutation p.N325T 0.09 tolerated(0.29) benign(0.003) TCGA-HU-A4GH-01 X 83128425 83128425 A G CYLC1 Missense_Mutation p.I237V 0.23 tolerated(0.85) benign(0.068) TCGA-HU-A4GJ-01 10 75671224 75671224 C T C10orf55 3'UTR 0.25 TCGA-HU-A4GJ-01 19 17886883 17886883 G A FCHO1 Silent p.P365P 0.04 TCGA-HU-A4GJ-01 2 177036518 177036518 C T HOXD3 Missense_Mutation p.P272L 0.05 deleterious(0.04) benign(0) TCGA-HU-A4GJ-01 5 140229832 140229832 G A PCDHA9 Silent p.S584S 0.04 TCGA-HU-A4GJ-01 8 124195202 124195202 C T FAM83A Missense_Mutation p.R36W 0.07 deleterious(0) probably_damaging(1) TCGA-HU-A4GJ-01 X 150840969 150840969 G T PASD1 Missense_Mutation p.Q584H 0.06 deleterious(0.01) possibly_damaging(0.542) TCGA-HU-A4GN-01 10 102054765 102054765 T C PKD2L1 Missense_Mutation p.Y491C 0.06 deleterious(0) probably_damaging(0.996) TCGA-HU-A4GN-01 10 105200581 105200581 G A PDCD11 Missense_Mutation p.A1511T 0.25 tolerated(0.55) benign(0.001) TCGA-HU-A4GN-01 10 112647591 112647591 A G PDCD4 Missense_Mutation p.K242E 0.14 tolerated(0.66) benign(0.134) TCGA-HU-A4GN-01 10 113917103 113917103 C T GPAM Silent p.Q675Q 0.09 TCGA-HU-A4GN-01 10 114925402 114925402 C - TCF7L2 Frame_Shift_Del p.S496Pfs*5 0.12 TCGA-HU-A4GN-01 10 118896159 118896160 - C VAX1 Frame_Shift_Ins p.S85Vfs*17 0.14 TCGA-HU-A4GN-01 10 12148275 12148275 G A DHTKD1 Missense_Mutation p.V643I 0.28 deleterious(0.05) possibly_damaging(0.811) TCGA-HU-A4GN-01 10 125521410 125521410 G - CPXM2 Frame_Shift_Del p.S586Pfs*9 0.10 TCGA-HU-A4GN-01 10 125528203 125528203 C T CPXM2 Missense_Mutation p.G380S 0.13 deleterious(0) probably_damaging(1) TCGA-HU-A4GN-01 10 126186676 126186676 G A LHPP Silent p.A201A 0.14 TCGA-HU-A4GN-01 10 127414391 127414391 C T EDRF1 Missense_Mutation p.P259L 0.11 deleterious(0) benign(0.299) TCGA-HU-A4GN-01 10 129881123 129881123 G A PTPRE Missense_Mutation p.V686I 0.24 tolerated(0.06) probably_damaging(0.996) TCGA-HU-A4GN-01 10 13213034 13213034 C T MCM10 Silent p.D40D 0.13 TCGA-HU-A4GN-01 10 13222486 13222486 G A MCM10 Missense_Mutation p.G271D 0.28 tolerated(0.26) benign(0.233) TCGA-HU-A4GN-01 10 135103541 135103541 A G TUBGCP2 Intron 0.20 TCGA-HU-A4GN-01 10 13824973 13824973 A G FRMD4A Silent p.D111D 0.22 TCGA-HU-A4GN-01 10 15146144 15146145 - A RPP38 Frame_Shift_Ins p.A280Sfs*17 0.20 TCGA-HU-A4GN-01 10 17495589 17495589 G T ST8SIA6 Missense_Mutation p.P57T 0.27 deleterious_low_confidence(0.01) benign(0.186) TCGA-HU-A4GN-01 10 21157652 21157652 C T NEBL Missense_Mutation p.A209T 0.19 tolerated(0.25) benign(0.004) TCGA-HU-A4GN-01 10 27537926 27537926 G T RP11-85G18.6 Intron 0.14 TCGA-HU-A4GN-01 10 28283978 28283978 T A ARMC4 Nonsense_Mutation p.K32* 0.08 TCGA-HU-A4GN-01 10 29813608 29813608 C A SVIL Missense_Mutation p.K793N 0.25 deleterious(0.02) benign(0.199) TCGA-HU-A4GN-01 10 29821018 29821018 C T SVIL Missense_Mutation p.R641H 0.07 deleterious(0.01) benign(0.082) TCGA-HU-A4GN-01 10 3151612 3151612 C T PFKP Silent p.C343C 0.19 TCGA-HU-A4GN-01 10 32197845 32197845 A G ARHGAP12 5'UTR 0.09 TCGA-HU-A4GN-01 10 323220 323220 A C DIP2C 3'UTR 0.30 TCGA-HU-A4GN-01 10 35500573 35500574 - T CREM Intron 0.25 TCGA-HU-A4GN-01 10 43882032 43882032 C T HNRNPF 3'UTR 0.09 TCGA-HU-A4GN-01 10 43882892 43882892 G A HNRNPF Silent p.P147P 0.19 TCGA-HU-A4GN-01 10 48389461 48389461 G T RBP3 Missense_Mutation p.H473N 0.15 tolerated(1) benign(0.322) TCGA-HU-A4GN-01 10 50740814 50740814 G A ERCC6-PGBD3 Missense_Mutation p.P66L 0.21 tolerated_low_confidence(0.09) benign(0.06) TCGA-HU-A4GN-01 10 5255081 5255081 G A AKR1C4 Missense_Mutation p.A269T 0.11 deleterious(0.04) probably_damaging(0.955) TCGA-HU-A4GN-01 10 5436175 5436175 C T TUBAL3 Missense_Mutation p.V216I 0.14 tolerated_low_confidence(1) benign(0.003) TCGA-HU-A4GN-01 10 54530515 54530516 - G MBL2 Frame_Shift_Ins p.G74Wfs*31 0.18 TCGA-HU-A4GN-01 10 55581693 55581693 T G PCDH15 Missense_Mutation p.E1933D 0.18 tolerated_low_confidence(0.06) unknown(0) TCGA-HU-A4GN-01 10 61665922 61665922 C T CCDC6 Silent p.L87L 0.19 TCGA-HU-A4GN-01 10 70263442 70263442 G A SLC25A16 Missense_Mutation p.T123M 0.22 tolerated(0.09) possibly_damaging(0.836) TCGA-HU-A4GN-01 10 70748821 70748821 C T KIAA1279 Missense_Mutation p.A78V 0.14 tolerated(0.28) benign(0.001) TCGA-HU-A4GN-01 10 71332693 71332693 G T NEUROG3 Missense_Mutation p.P36Q 0.28 deleterious(0.01) probably_damaging(0.91) TCGA-HU-A4GN-01 10 72358189 72358189 C - PRF1 Frame_Shift_Del p.D430Tfs*10 0.18 TCGA-HU-A4GN-01 10 72511376 72511376 C T ADAMTS14 Missense_Mutation p.A860V 0.08 deleterious(0) possibly_damaging(0.845) TCGA-HU-A4GN-01 10 72645663 72645663 G A PCBD1 Silent p.S9S 0.13 TCGA-HU-A4GN-01 10 73082600 73082600 C T SLC29A3 Missense_Mutation p.A30V 0.11 tolerated_low_confidence(0.2) benign(0.118) TCGA-HU-A4GN-01 10 76855374 76855374 G T DUSP13 Missense_Mutation p.P168H 0.11 deleterious(0) probably_damaging(0.987) TCGA-HU-A4GN-01 10 76868884 76868884 C - DUSP13 Frame_Shift_Del p.G11Efs*37 0.20 TCGA-HU-A4GN-01 10 77158710 77158710 C T ZNF503 Missense_Mutation p.A580T 0.17 deleterious(0.02) benign(0.014) TCGA-HU-A4GN-01 10 77159254 77159254 C T ZNF503 Silent p.A398A 0.23 TCGA-HU-A4GN-01 10 78651415 78651415 C T KCNMA1 Silent p.P1053P 0.17 TCGA-HU-A4GN-01 10 78709085 78709085 C A KCNMA1 Missense_Mutation p.V825F 0.11 deleterious(0) probably_damaging(0.984) TCGA-HU-A4GN-01 10 8106092 8106092 G A GATA3 Silent p.K305K 0.12 TCGA-HU-A4GN-01 10 82369293 82369293 C - SH2D4B Frame_Shift_Del p.W326Gfs*34 0.13 TCGA-HU-A4GN-01 10 85997404 85997404 G - LRIT1 Frame_Shift_Del p.P54Rfs*114 0.25 TCGA-HU-A4GN-01 10 88702910 88702910 G A MMRN2 Missense_Mutation p.S544L 0.16 tolerated(0.19) benign(0.021) TCGA-HU-A4GN-01 10 890939 890939 T - LARP4B Frame_Shift_Del p.T163Hfs*47 0.25 TCGA-HU-A4GN-01 10 89268174 89268174 A - MINPP1 Frame_Shift_Del p.N242Mfs*21 0.18 TCGA-HU-A4GN-01 10 90350367 90350367 A G LIPJ 5'UTR 0.12 TCGA-HU-A4GN-01 10 94834065 94834065 C T CYP26A1 Missense_Mutation p.R64W 0.23 deleterious(0.01) probably_damaging(0.956) TCGA-HU-A4GN-01 10 94834777 94834777 G A CYP26A1 Missense_Mutation p.R219H 0.08 deleterious(0) probably_damaging(0.967) TCGA-HU-A4GN-01 10 96005982 96005982 C T PLCE1 Silent p.S900S 0.21 TCGA-HU-A4GN-01 10 97366325 97366325 A G ALDH18A1 3'UTR 0.30 TCGA-HU-A4GN-01 11 1017296 1017296 T C MUC6 Silent p.T1835T 0.06 TCGA-HU-A4GN-01 11 102593297 102593297 A - MMP8 Frame_Shift_Del p.F70Lfs*3 0.11 TCGA-HU-A4GN-01 11 107920713 107920713 T C CUL5 Missense_Mutation p.F111L 0.11 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GN-01 11 108017007 108017007 G A ACAT1 Missense_Mutation p.A362T 0.11 deleterious(0) probably_damaging(0.967) TCGA-HU-A4GN-01 11 1086062 1086062 G A MUC2 Missense_Mutation p.V968I 0.08 benign(0.28) TCGA-HU-A4GN-01 11 108712180 108712180 A - DDX10 Frame_Shift_Del p.I744Lfs*10 0.19 TCGA-HU-A4GN-01 11 110035243 110035243 G T ZC3H12C Missense_Mutation p.S478I 0.06 tolerated(0.34) benign(0.101) TCGA-HU-A4GN-01 11 111425990 111425991 - A LAYN Frame_Shift_Ins p.T222Nfs*3 0.14 TCGA-HU-A4GN-01 11 113268037 113268037 C T ANKK1 Silent p.C310C 0.21 TCGA-HU-A4GN-01 11 113270600 113270600 G A ANKK1 Missense_Mutation p.G637R 0.11 tolerated(0.08) benign(0.145) TCGA-HU-A4GN-01 11 117391911 117391911 C - DSCAML1 Frame_Shift_Del p.A443Pfs*45 0.15 TCGA-HU-A4GN-01 11 118919979 118919979 C A HYOU1 Intron 0.14 TCGA-HU-A4GN-01 11 118941055 118941055 G A VPS11 Missense_Mutation p.R194H 0.38 tolerated(0.17) benign(0.15) TCGA-HU-A4GN-01 11 119291018 119291018 C T THY1 Missense_Mutation p.R39H 0.24 tolerated(0.08) benign(0.072) TCGA-HU-A4GN-01 11 119991317 119991317 T C TRIM29 Missense_Mutation p.T498A 0.15 tolerated(0.41) benign(0.001) TCGA-HU-A4GN-01 11 121016689 121016689 C T TECTA Silent p.F1323F 0.10 TCGA-HU-A4GN-01 11 121037313 121037313 G T TECTA Missense_Mutation p.V1804L 0.23 tolerated(0.37) possibly_damaging(0.864) TCGA-HU-A4GN-01 11 121403215 121403215 G A SORL1 Missense_Mutation p.G547R 0.09 deleterious(0) probably_damaging(1) TCGA-HU-A4GN-01 11 121477994 121477994 G A SORL1 Missense_Mutation p.V1721I 0.25 tolerated(0.6) benign(0.009) TCGA-HU-A4GN-01 11 124545214 124545216 TCT - SPA17 In_Frame_Del p.L20del 0.13 TCGA-HU-A4GN-01 11 125873845 125873845 C T CDON Missense_Mutation p.A660T 0.07 tolerated(0.07) benign(0.127) TCGA-HU-A4GN-01 11 126135224 126135224 C T SRPR Missense_Mutation p.R417H 0.28 deleterious(0.04) possibly_damaging(0.879) TCGA-HU-A4GN-01 11 1267481 1267481 C - MUC5B Frame_Shift_Del p.S3126Pfs*13 0.12 TCGA-HU-A4GN-01 11 1271490 1271490 G A MUC5B Silent p.T4460T 0.12 TCGA-HU-A4GN-01 11 132180070 132180070 G A NTM Silent p.Q242Q 0.25 TCGA-HU-A4GN-01 11 14156978 14156978 A G RNA5SP332 3'Flank 0.07 TCGA-HU-A4GN-01 11 14316397 14316397 C T RRAS2 Missense_Mutation p.A70T 0.18 deleterious(0) possibly_damaging(0.857) TCGA-HU-A4GN-01 11 14665715 14665715 G A PDE3B Missense_Mutation p.V32M 0.12 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GN-01 11 14880640 14880640 G A PDE3B Missense_Mutation p.A858T 0.07 deleterious(0) probably_damaging(1) TCGA-HU-A4GN-01 11 16339986 16339987 - C SOX6 Intron 0.19 TCGA-HU-A4GN-01 11 17115867 17115867 G A PIK3C2A Silent p.D1464D 0.21 TCGA-HU-A4GN-01 11 1778684 1778684 C T CTSD Missense_Mutation p.A192T 0.11 deleterious(0.02) possibly_damaging(0.576) TCGA-HU-A4GN-01 11 18373881 18373883 ATC - GTF2H1 In_Frame_Del p.H384del 0.23 TCGA-HU-A4GN-01 11 18633956 18633956 G A SPTY2D1 Silent p.Y597Y 0.13 TCGA-HU-A4GN-01 11 19247354 19247354 C A E2F8 Nonsense_Mutation p.E651* 0.16 TCGA-HU-A4GN-01 11 19955143 19955143 C T NAV2 Silent p.T474T 0.05 TCGA-HU-A4GN-01 11 20515777 20515777 A - PRMT3 Frame_Shift_Del p.K489Nfs*11 0.11 TCGA-HU-A4GN-01 11 2156625 2156625 G A IGF2 Silent p.F99F 0.21 TCGA-HU-A4GN-01 11 26743064 26743064 C A SLC5A12 Silent p.T66T 0.22 TCGA-HU-A4GN-01 11 31805089 31805089 G A ELP4 3'UTR 0.21 TCGA-HU-A4GN-01 11 32611130 32611130 A - EIF3M Frame_Shift_Del p.K161Sfs*5 0.21 TCGA-HU-A4GN-01 11 34165024 34165024 A G NAT10 Missense_Mutation p.N973S 0.26 tolerated(0.67) benign(0.001) TCGA-HU-A4GN-01 11 35641134 35641134 G A FJX1 Missense_Mutation p.R317H 0.11 tolerated(0.1) benign(0.387) TCGA-HU-A4GN-01 11 36511400 36511400 A G TRAF6 Silent p.D519D 0.17 TCGA-HU-A4GN-01 11 36614195 36614195 T - RAG2 Frame_Shift_Del p.G509Vfs*6 0.27 TCGA-HU-A4GN-01 11 4471014 4471014 G A OR52K2 Missense_Mutation p.A149T 0.21 deleterious(0.03) benign(0.11) TCGA-HU-A4GN-01 11 45935924 45935924 G - PEX16 Frame_Shift_Del p.L213Wfs*42 0.12 TCGA-HU-A4GN-01 11 46744794 46744794 T C F2 Silent p.I127I 0.05 TCGA-HU-A4GN-01 11 46747450 46747450 G T F2 Missense_Mutation p.G201C 0.15 tolerated(0.05) possibly_damaging(0.566) TCGA-HU-A4GN-01 11 47311500 47311500 C T MADD Missense_Mutation p.R967C 0.18 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GN-01 11 48166268 48166268 G A PTPRJ Missense_Mutation p.D873N 0.19 deleterious(0) probably_damaging(0.984) TCGA-HU-A4GN-01 11 50003327 50003327 G T OR4C12 Silent p.T237T 0.21 TCGA-HU-A4GN-01 11 5364477 5364477 G A OR51B5 Missense_Mutation p.A93V 0.06 tolerated(0.19) benign(0.001) TCGA-HU-A4GN-01 11 55065040 55065040 T A TRIM51HP RNA 0.25 TCGA-HU-A4GN-01 11 55339694 55339694 C T OR4C16 Missense_Mutation p.R31C 0.15 deleterious(0.05) benign(0.008) TCGA-HU-A4GN-01 11 55860792 55860792 C T OR8I2 Silent p.G3G 0.07 TCGA-HU-A4GN-01 11 5602471 5602471 T G OR52B6 Missense_Mutation p.F122C 0.18 deleterious(0) probably_damaging(0.996) TCGA-HU-A4GN-01 11 56128400 56128400 A G OR8J1 Silent p.L226L 0.21 TCGA-HU-A4GN-01 11 5632626 5632626 G T TRIM6 3'UTR 0.21 TCGA-HU-A4GN-01 11 56431207 56431207 G T OR5AR1 Missense_Mutation p.G16C 0.19 deleterious(0) probably_damaging(1) TCGA-HU-A4GN-01 11 56431861 56431861 C T OR5AR1 Missense_Mutation p.R234C 0.19 deleterious(0.02) possibly_damaging(0.849) TCGA-HU-A4GN-01 11 57135559 57135559 G A P2RX3 Missense_Mutation p.V307M 0.31 deleterious(0) probably_damaging(0.997) TCGA-HU-A4GN-01 11 57243698 57243698 C T RTN4RL2 Silent p.L193L 0.10 TCGA-HU-A4GN-01 11 57569589 57569589 A - CTNND1 Frame_Shift_Del p.N449Tfs*49 0.17 TCGA-HU-A4GN-01 11 58275342 58275342 C T OR5B21 Silent p.T79T 0.17 TCGA-HU-A4GN-01 11 58892722 58892725 AATT - FAM111B Frame_Shift_Del p.N386Sfs*2 0.11 TCGA-HU-A4GN-01 11 60689494 60689494 G A TMEM109 Missense_Mutation p.A197T 0.20 tolerated(0.16) possibly_damaging(0.734) TCGA-HU-A4GN-01 11 61498870 61498870 C T DAGLA Missense_Mutation p.R311W 0.04 deleterious(0) probably_damaging(0.995) TCGA-HU-A4GN-01 11 61916012 61916012 G A INCENP Missense_Mutation p.E757K 0.12 tolerated(0.13) unknown(0) TCGA-HU-A4GN-01 11 62290571 62290571 T C AHNAK Missense_Mutation p.D3773G 0.09 possibly_damaging(0.709) TCGA-HU-A4GN-01 11 62290971 62290971 C T AHNAK Missense_Mutation p.V3640I 0.05 benign(0.208) TCGA-HU-A4GN-01 11 62327804 62327804 C T EEF1G Missense_Mutation p.R327H 0.30 deleterious(0.02) benign(0.02) TCGA-HU-A4GN-01 11 62381147 62381147 G A ROM1 Missense_Mutation p.A132T 0.20 tolerated(1) benign(0.138) TCGA-HU-A4GN-01 11 6265356 6265356 C G CNGA4 Missense_Mutation p.A482G 0.27 tolerated(0.13) benign(0.011) TCGA-HU-A4GN-01 11 63667438 63667440 CTT - MARK2 In_Frame_Del p.F209del 0.20 TCGA-HU-A4GN-01 11 63764653 63764653 C T OTUB1 Silent p.R185R 0.08 TCGA-HU-A4GN-01 11 64522266 64522266 C T PYGM Missense_Mutation p.V300M 0.27 tolerated(0.16) possibly_damaging(0.835) TCGA-HU-A4GN-01 11 64940678 64940678 C A SPDYC Missense_Mutation p.P291H 0.13 deleterious_low_confidence(0) benign(0.37) TCGA-HU-A4GN-01 11 65124594 65124594 G T TIGD3 Missense_Mutation p.G439C 0.09 tolerated(0.06) benign(0.01) TCGA-HU-A4GN-01 11 65547054 65547054 G A AP5B1 Missense_Mutation p.P304S 0.21 tolerated(1) benign(0.015) TCGA-HU-A4GN-01 11 65688916 65688916 C - DRAP1 3'UTR 0.21 TCGA-HU-A4GN-01 11 66082358 66082358 C G CD248 Missense_Mutation p.G714A 0.19 tolerated(0.28) probably_damaging(0.998) TCGA-HU-A4GN-01 11 67203227 67203227 C A PTPRCAP Missense_Mutation p.G200C 0.14 deleterious(0) possibly_damaging(0.792) TCGA-HU-A4GN-01 11 68380586 68380586 C T PPP6R3 3'UTR 0.06 TCGA-HU-A4GN-01 11 68675625 68675625 G A IGHMBP2 Missense_Mutation p.G90D 0.10 deleterious(0) possibly_damaging(0.762) TCGA-HU-A4GN-01 11 68679004 68679004 C A IGHMBP2 Missense_Mutation p.P215H 0.09 deleterious(0) probably_damaging(1) TCGA-HU-A4GN-01 11 68854605 68854605 G A TPCN2 Missense_Mutation p.R704H 0.09 tolerated(0.1) benign(0.005) TCGA-HU-A4GN-01 11 6898745 6898745 C T OR10A4 Silent p.I289I 0.14 TCGA-HU-A4GN-01 11 70007369 70007369 C T ANO1 Missense_Mutation p.R561W 0.11 deleterious(0) probably_damaging(0.997) TCGA-HU-A4GN-01 11 70319246 70319246 G A SHANK2 Missense_Mutation p.R1761C 0.20 tolerated(0.16) possibly_damaging(0.689) TCGA-HU-A4GN-01 11 71725049 71725050 AG - NUMA1 Frame_Shift_Del p.L1167Afs*39 0.12 TCGA-HU-A4GN-01 11 72946341 72946341 G A P2RY2 3'UTR 0.08 TCGA-HU-A4GN-01 11 73068356 73068356 C T ARHGEF17 Silent p.D1357D 0.17 TCGA-HU-A4GN-01 11 7847470 7847470 A G OR5P3 Missense_Mutation p.L17S 0.18 deleterious(0) probably_damaging(0.963) TCGA-HU-A4GN-01 11 82571016 82571016 T A PRCP Intron 0.17 TCGA-HU-A4GN-01 11 85445200 85445200 G A SYTL2 Missense_Mutation p.S390L 0.14 tolerated(0.86) benign(0) TCGA-HU-A4GN-01 11 8752324 8752324 C T ST5 Nonsense_Mutation p.W171* 0.15 TCGA-HU-A4GN-01 11 8752514 8752514 G A ST5 Missense_Mutation p.A108V 0.08 tolerated_low_confidence(1) benign(0) TCGA-HU-A4GN-01 11 88386441 88386441 T G GRM5 Missense_Mutation p.T348P 0.12 deleterious(0.01) possibly_damaging(0.508) TCGA-HU-A4GN-01 11 8959358 8959358 G T ASCL3 Silent p.R117R 0.17 TCGA-HU-A4GN-01 11 93470382 93470382 A - TAF1D Frame_Shift_Del p.F161Lfs*7 0.27 TCGA-HU-A4GN-01 11 95712334 95712334 C T MAML2 Silent p.T1083T 0.13 TCGA-HU-A4GN-01 11 99827584 99827584 G A CNTN5 Silent p.A240A 0.21 TCGA-HU-A4GN-01 12 10137481 10137481 C T CLEC12A Silent p.N228N 0.19 TCGA-HU-A4GN-01 12 101581230 101581230 G A SLC5A8 Silent p.L299L 0.07 TCGA-HU-A4GN-01 12 102811676 102811676 G T IGF1 Missense_Mutation p.Q170K 0.10 tolerated_low_confidence(0.36) benign(0.002) TCGA-HU-A4GN-01 12 104049047 104049047 C T STAB2 Silent p.L524L 0.14 TCGA-HU-A4GN-01 12 104698101 104698101 A T EID3 Missense_Mutation p.N130I 0.15 deleterious(0) probably_damaging(0.989) TCGA-HU-A4GN-01 12 107393779 107393779 G A CRY1 Nonsense_Mutation p.R256* 0.14 TCGA-HU-A4GN-01 12 109210869 109210869 G A SSH1 Missense_Mutation p.R116C 0.23 deleterious(0.01) benign(0.223) TCGA-HU-A4GN-01 12 109704119 109704119 G A ACACB Silent p.A2443A 0.30 TCGA-HU-A4GN-01 12 109948193 109948193 G A UBE3B Missense_Mutation p.G596R 0.32 tolerated(0.12) benign(0.011) TCGA-HU-A4GN-01 12 110770466 110770466 C T ATP2A2 Missense_Mutation p.S387L 0.20 deleterious(0) benign(0.17) TCGA-HU-A4GN-01 12 111168366 111168366 C T PPP1CC Missense_Mutation p.S129N 0.06 tolerated_low_confidence(0.06) benign(0.177) TCGA-HU-A4GN-01 12 111758403 111758403 C T CUX2 Missense_Mutation p.R864W 0.50 deleterious(0) probably_damaging(0.969) TCGA-HU-A4GN-01 12 111785628 111785628 G A CUX2 Silent p.E1320E 0.19 TCGA-HU-A4GN-01 12 111923112 111923112 C T ATXN2 Silent p.T987T 0.14 TCGA-HU-A4GN-01 12 118639156 118639157 - T TAOK3 Frame_Shift_Ins p.I311Nfs*13 0.19 TCGA-HU-A4GN-01 12 119773055 119773055 C T CCDC60 Missense_Mutation p.S25L 0.07 deleterious(0.03) benign(0.09) TCGA-HU-A4GN-01 12 120546244 120546244 C T RAB35 Missense_Mutation p.R27H 0.18 deleterious(0) probably_damaging(1) TCGA-HU-A4GN-01 12 121093979 121093979 G A CABP1 Intron 0.13 TCGA-HU-A4GN-01 12 121678620 121678620 C - CAMKK2 Frame_Shift_Del p.G550Efs*7 0.15 TCGA-HU-A4GN-01 12 122107269 122107269 C T MORN3 Missense_Mutation p.E41K 0.18 deleterious(0.01) benign(0.258) TCGA-HU-A4GN-01 12 122492892 122492892 G - BCL7A Frame_Shift_Del 0.22 TCGA-HU-A4GN-01 12 129442187 129442187 A G GLT1D1 Missense_Mutation p.Q213R 0.30 deleterious(0) benign(0.145) TCGA-HU-A4GN-01 12 132426054 132426054 G A PUS1 Silent p.P254P 0.26 TCGA-HU-A4GN-01 12 132632289 132632289 G A NOC4L Missense_Mutation p.V189M 0.08 tolerated(0.15) benign(0.007) TCGA-HU-A4GN-01 12 18854469 18854469 T - PLCZ1 Frame_Shift_Del p.K328Sfs*5 0.14 TCGA-HU-A4GN-01 12 19522684 19522684 C T PLEKHA5 Missense_Mutation p.P1271L 0.13 deleterious(0) possibly_damaging(0.716) TCGA-HU-A4GN-01 12 21325632 21325632 G A SLCO1B1 Missense_Mutation p.A45T 0.27 deleterious(0.04) benign(0.034) TCGA-HU-A4GN-01 12 21602582 21602582 G A PYROXD1 Missense_Mutation p.G124E 0.17 tolerated(0.27) benign(0.02) TCGA-HU-A4GN-01 12 22796816 22796816 G A ETNK1 Silent p.E181E 0.11 TCGA-HU-A4GN-01 12 27075620 27075620 G A ASUN Missense_Mutation p.A273V 0.13 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GN-01 12 41327522 41327522 G A CNTN1 Missense_Mutation p.R276Q 0.07 deleterious(0.02) benign(0.097) TCGA-HU-A4GN-01 12 41961668 41961668 A C PDZRN4 Missense_Mutation p.E517D 0.06 tolerated(0.23) benign(0.006) TCGA-HU-A4GN-01 12 43777488 43777488 T G ADAMTS20 Missense_Mutation p.E1557A 0.10 tolerated(0.53) benign(0.003) TCGA-HU-A4GN-01 12 44148392 44148392 A - PUS7L Frame_Shift_Del p.F219Lfs*47 0.14 TCGA-HU-A4GN-01 12 45822891 45822891 G A ANO6 Missense_Mutation p.V865I 0.15 tolerated(0.54) benign(0.009) TCGA-HU-A4GN-01 12 4627343 4627343 T C C12orf4 Missense_Mutation p.H305R 0.08 tolerated(0.52) benign(0.007) TCGA-HU-A4GN-01 12 4855350 4855350 T C GALNT8 Missense_Mutation p.F367L 0.18 deleterious(0) probably_damaging(0.987) TCGA-HU-A4GN-01 12 49420273 49420273 C T KMT2D Missense_Mutation p.R5159Q 0.20 unknown(0) TCGA-HU-A4GN-01 12 49440450 49440450 T C KMT2D Missense_Mutation p.T1454A 0.30 probably_damaging(0.996) TCGA-HU-A4GN-01 12 49447845 49447846 - T KMT2D Frame_Shift_Ins p.C197Mfs*23 0.14 TCGA-HU-A4GN-01 12 49579153 49579153 A G TUBA1A Silent p.I332I 0.19 TCGA-HU-A4GN-01 12 49719360 49719360 C A TROAP Missense_Mutation p.S138R 0.09 tolerated(0.06) probably_damaging(0.95) TCGA-HU-A4GN-01 12 49953241 49953241 G A MCRS1 Missense_Mutation p.R374C 0.16 deleterious(0) possibly_damaging(0.765) TCGA-HU-A4GN-01 12 50029242 50029242 G A PRPF40B Missense_Mutation p.A421T 0.17 deleterious(0.03) probably_damaging(0.96) TCGA-HU-A4GN-01 12 5154557 5154557 G A KCNA5 Missense_Mutation p.R415H 0.04 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GN-01 12 51723605 51723605 C T CELA1 Missense_Mutation p.G208S 0.21 deleterious(0.02) probably_damaging(0.994) TCGA-HU-A4GN-01 12 52695706 52695706 T C KRT86 Silent p.T2T 0.06 TCGA-HU-A4GN-01 12 52885416 52885416 C A KRT6A Missense_Mutation p.E215D 0.28 tolerated(0.13) benign(0.282) TCGA-HU-A4GN-01 12 53012151 53012151 C - KRT73 Frame_Shift_Del p.G53Vfs*65 0.18 TCGA-HU-A4GN-01 12 53554091 53554091 G A CSAD Missense_Mutation p.R354C 0.09 deleterious(0.02) probably_damaging(0.934) TCGA-HU-A4GN-01 12 53573652 53573652 G T CSAD 5'UTR 0.20 TCGA-HU-A4GN-01 12 53677280 53677280 T C ESPL1 Missense_Mutation p.L1012S 0.06 deleterious(0) probably_damaging(1) TCGA-HU-A4GN-01 12 54676226 54676226 C A HNRNPA1 Missense_Mutation p.A180D 0.24 deleterious(0) probably_damaging(0.983) TCGA-HU-A4GN-01 12 56113373 56113373 C T BLOC1S1 Silent p.L148L 0.25 TCGA-HU-A4GN-01 12 56630453 56630453 A G SLC39A5 Missense_Mutation p.H377R 0.13 tolerated(0.13) benign(0.178) TCGA-HU-A4GN-01 12 56994066 56994066 A G BAZ2A Missense_Mutation p.L1606P 0.12 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GN-01 12 57485491 57485491 G - NAB2 Frame_Shift_Del p.L225Wfs*44 0.21 TCGA-HU-A4GN-01 12 57864329 57864329 G A GLI1 Silent p.S602S 0.26 TCGA-HU-A4GN-01 12 58201268 58201268 C T AVIL Missense_Mutation p.R446H 0.07 tolerated(0.41) probably_damaging(0.982) TCGA-HU-A4GN-01 12 6167034 6167034 G A VWF Silent p.C570C 0.05 TCGA-HU-A4GN-01 12 63543909 63543909 G A AVPR1A Silent p.Y236Y 0.12 TCGA-HU-A4GN-01 12 66725241 66725241 C T HELB Missense_Mutation p.A993V 0.13 tolerated(0.32) benign(0.001) TCGA-HU-A4GN-01 12 67706651 67706651 A G CAND1 3'UTR 0.10 TCGA-HU-A4GN-01 12 69042518 69042518 A G RAP1B Missense_Mutation p.K5R 0.19 tolerated(0.05) probably_damaging(0.999) TCGA-HU-A4GN-01 12 6936019 6936019 G T GPR162 Missense_Mutation p.G473C 0.23 deleterious_low_confidence(0.03) benign(0.212) TCGA-HU-A4GN-01 12 6979535 6979535 T C TPI1 Silent p.N283N 0.08 TCGA-HU-A4GN-01 12 72026000 72026000 C A ZFC3H1 Missense_Mutation p.G1038C 0.12 tolerated(0.05) possibly_damaging(0.635) TCGA-HU-A4GN-01 12 72094768 72094768 G - TMEM19 Frame_Shift_Del p.*337Efs*9 0.16 TCGA-HU-A4GN-01 12 72094835 72094835 T C TMEM19 3'UTR 0.10 TCGA-HU-A4GN-01 12 7548698 7548698 G A CD163L1 Silent p.I681I 0.09 TCGA-HU-A4GN-01 12 77444367 77444367 G T E2F7 Missense_Mutation p.A176D 0.13 deleterious(0) probably_damaging(1) TCGA-HU-A4GN-01 12 79685798 79685798 A G SYT1 Missense_Mutation p.D121G 0.12 deleterious(0.04) benign(0.045) TCGA-HU-A4GN-01 12 80750200 80750200 T C OTOGL Silent p.C1928C 0.14 TCGA-HU-A4GN-01 12 9095102 9095102 C - M6PR Frame_Shift_Del p.F208Sfs*7 0.15 TCGA-HU-A4GN-01 12 9266084 9266084 A G A2M Missense_Mutation p.C48R 0.17 deleterious(0) probably_damaging(0.996) TCGA-HU-A4GN-01 12 94243943 94243943 C T CRADD Missense_Mutation p.R166C 0.12 deleterious(0.02) possibly_damaging(0.87) TCGA-HU-A4GN-01 12 94676091 94676091 C T PLXNC1 Nonsense_Mutation p.R1265* 0.16 TCGA-HU-A4GN-01 12 97337434 97337434 T - NEDD1 Frame_Shift_Del p.F472Lfs*15 0.17 TCGA-HU-A4GN-01 13 100634887 100634887 G A ZIC2 Missense_Mutation p.R190H 0.33 deleterious(0.02) probably_damaging(0.984) TCGA-HU-A4GN-01 13 101833511 101833511 G T NALCN Intron 0.22 TCGA-HU-A4GN-01 13 101881812 101881812 T C NALCN Missense_Mutation p.M520V 0.07 tolerated(0.41) benign(0.004) TCGA-HU-A4GN-01 13 102029355 102029355 C T NALCN Missense_Mutation p.R143Q 0.11 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GN-01 13 110434417 110434417 G A IRS2 Silent p.H1328H 0.11 TCGA-HU-A4GN-01 13 110436712 110436712 C T IRS2 Silent p.A563A 0.11 TCGA-HU-A4GN-01 13 110814631 110814631 C T COL4A1 Missense_Mutation p.G1470R 0.20 unknown(0) TCGA-HU-A4GN-01 13 110835356 110835356 C G COL4A1 Silent p.G693G 0.24 TCGA-HU-A4GN-01 13 110838820 110838821 - G COL4A1 Frame_Shift_Ins p.G604Wfs*13 0.15 TCGA-HU-A4GN-01 13 113633924 113633924 T C MCF2L Intron 0.19 TCGA-HU-A4GN-01 13 113634015 113634015 C T MCF2L Intron 0.11 TCGA-HU-A4GN-01 13 22095413 22095413 C A MICU2 Nonsense_Mutation p.E190* 0.16 TCGA-HU-A4GN-01 13 23906308 23906308 G A SACS Nonsense_Mutation p.R3903* 0.19 TCGA-HU-A4GN-01 13 24330693 24330693 T C MIPEP Missense_Mutation p.M679V 0.11 deleterious(0.03) benign(0.297) TCGA-HU-A4GN-01 13 25480097 25480097 G A CENPJ Silent p.D693D 0.21 TCGA-HU-A4GN-01 13 28367140 28367140 G A GSX1 Missense_Mutation p.G105R 0.21 tolerated(0.12) benign(0.208) TCGA-HU-A4GN-01 13 29599560 29599560 G A MTUS2 Missense_Mutation p.R252H 0.20 tolerated(0.62) benign(0.001) TCGA-HU-A4GN-01 13 31725098 31725098 G A HSPH1 Silent p.S298S 0.12 TCGA-HU-A4GN-01 13 32912670 32912670 C T BRCA2 Missense_Mutation p.A1393V 0.09 tolerated(1) benign(0) TCGA-HU-A4GN-01 13 32915239 32915239 C T BRCA2 Silent p.A2249A 0.15 TCGA-HU-A4GN-01 13 32972773 32972773 A G BRCA2 Missense_Mutation p.S3375G 0.08 tolerated(0.33) benign(0.006) TCGA-HU-A4GN-01 13 36521570 36521571 - A DCLK1 Frame_Shift_Ins p.G250Wfs*2 0.12 TCGA-HU-A4GN-01 13 36686033 36686033 T - DCLK1 Frame_Shift_Del p.K232Nfs*11 0.23 TCGA-HU-A4GN-01 13 36767799 36767799 C T SOHLH2 Missense_Mutation p.S207N 0.06 tolerated(0.35) benign(0.015) TCGA-HU-A4GN-01 13 36905566 36905566 C A SPG20 Silent p.L326L 0.21 TCGA-HU-A4GN-01 13 41645700 41645700 C T WBP4 Silent p.D159D 0.19 TCGA-HU-A4GN-01 13 42874486 42874486 A - AKAP11 Frame_Shift_Del p.N537Ifs*8 0.22 TCGA-HU-A4GN-01 13 43788076 43788076 C A ENOX1 3'UTR 0.13 TCGA-HU-A4GN-01 13 43934138 43934138 G A ENOX1 Silent p.V146V 0.09 TCGA-HU-A4GN-01 13 45149730 45149730 T C TSC22D1 Missense_Mutation p.R161G 0.20 deleterious(0) probably_damaging(0.989) TCGA-HU-A4GN-01 13 45563443 45563443 C T NUFIP1 Silent p.L43L 0.16 TCGA-HU-A4GN-01 13 46559623 46559623 C T ZC3H13 Missense_Mutation p.R510H 0.25 probably_damaging(0.997) TCGA-HU-A4GN-01 13 47409176 47409176 T G HTR2A Missense_Mutation p.K404N 0.20 deleterious(0.03) probably_damaging(0.961) TCGA-HU-A4GN-01 13 52524252 52524252 G A ATP7B Missense_Mutation p.A874V 0.22 deleterious(0) probably_damaging(0.943) TCGA-HU-A4GN-01 13 52971621 52971622 - C THSD1 Frame_Shift_Ins p.V256Gfs*36 0.10 TCGA-HU-A4GN-01 13 53420573 53420573 G T PCDH8 Missense_Mutation p.R667S 0.19 tolerated(0.75) benign(0.016) TCGA-HU-A4GN-01 13 58207209 58207209 G A PCDH17 Missense_Mutation p.G177S 0.19 tolerated_low_confidence(0.12) benign(0.082) TCGA-HU-A4GN-01 13 61068589 61068589 T A TDRD3 Silent p.G246G 0.08 TCGA-HU-A4GN-01 13 99030142 99030142 G A FARP1 Missense_Mutation p.A156T 0.14 tolerated(0.07) benign(0.176) TCGA-HU-A4GN-01 13 99515694 99515694 C T DOCK9 Missense_Mutation p.R1132H 0.18 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GN-01 14 100996415 100996415 C A WDR25 3'UTR 0.23 TCGA-HU-A4GN-01 14 101451116 101451116 G A SNORD114-24 RNA 0.08 TCGA-HU-A4GN-01 14 104145810 104145810 C T KLC1 Silent p.N526N 0.07 TCGA-HU-A4GN-01 14 104165784 104165785 - G XRCC3 Frame_Shift_Ins p.R231Qfs*14 0.16 TCGA-HU-A4GN-01 14 105410343 105410343 C T AHNAK2 Silent p.V3815V 0.06 TCGA-HU-A4GN-01 14 105517291 105517291 C A GPR132 3'UTR 0.21 TCGA-HU-A4GN-01 14 105618041 105618041 C T JAG2 Missense_Mutation p.G359R 0.24 tolerated(0.05) benign(0.267) TCGA-HU-A4GN-01 14 105683991 105683991 C T BRF1 Silent p.P554P 0.29 TCGA-HU-A4GN-01 14 106110055 106110055 A G IGHG2 Missense_Mutation p.V188A 0.18 tolerated(0.63) benign(0.001) TCGA-HU-A4GN-01 14 21542925 21542925 G A ARHGEF40 Missense_Mutation p.G346R 0.12 deleterious(0.03) benign(0) TCGA-HU-A4GN-01 14 22675891 22675891 T C TRAV34 Missense_Mutation p.M68T 0.14 tolerated(0.74) benign(0.002) TCGA-HU-A4GN-01 14 23495175 23495175 A - PSMB5 3'UTR 0.41 TCGA-HU-A4GN-01 14 23829042 23829042 G - EFS Frame_Shift_Del p.I216Sfs*8 0.17 TCGA-HU-A4GN-01 14 24041061 24041061 C T JPH4 Missense_Mutation p.R407Q 0.15 tolerated(0.11) benign(0.001) TCGA-HU-A4GN-01 14 25288406 25288408 AGG - STXBP6 Intron 0.17 TCGA-HU-A4GN-01 14 30100065 30100065 C T PRKD1 Missense_Mutation p.V519I 0.20 tolerated(0.43) benign(0.005) TCGA-HU-A4GN-01 14 32561268 32561268 T C ARHGAP5 Missense_Mutation p.Y465H 0.13 tolerated(0.17) possibly_damaging(0.702) TCGA-HU-A4GN-01 14 32562544 32562545 - T ARHGAP5 Frame_Shift_Ins p.E893* 0.14 TCGA-HU-A4GN-01 14 33291546 33291546 C T AKAP6 Silent p.C1509C 0.15 TCGA-HU-A4GN-01 14 34269096 34269096 G A NPAS3 Missense_Mutation p.S528N 0.24 tolerated(0.15) possibly_damaging(0.483) TCGA-HU-A4GN-01 14 35245412 35245412 T C BAZ1A Missense_Mutation p.Q849R 0.13 tolerated(0.17) possibly_damaging(0.775) TCGA-HU-A4GN-01 14 36074845 36074845 T C RALGAPA1 Missense_Mutation p.N1828D 0.14 deleterious(0) probably_damaging(0.996) TCGA-HU-A4GN-01 14 45431603 45431603 C T FAM179B 5'UTR 0.09 TCGA-HU-A4GN-01 14 50140860 50140860 C T POLE2 Missense_Mutation p.R133Q 0.23 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GN-01 14 52478332 52478332 G A NID2 Missense_Mutation p.R1164W 0.22 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GN-01 14 55509878 55509879 - A SOCS4 Frame_Shift_Ins p.S43Efs*2 0.21 TCGA-HU-A4GN-01 14 56119760 56119761 - A KTN1 Frame_Shift_Ins p.A909Sfs*10 0.18 TCGA-HU-A4GN-01 14 60758133 60758133 C T PPM1A Silent p.A433A 0.17 TCGA-HU-A4GN-01 14 61747056 61747056 G A TMEM30B Silent p.R270R 0.18 TCGA-HU-A4GN-01 14 64494437 64494437 A - SYNE2 Frame_Shift_Del p.N2215Ifs*12 0.20 TCGA-HU-A4GN-01 14 64519599 64519599 G A SYNE2 Missense_Mutation p.A2990T 0.13 benign(0.124) TCGA-HU-A4GN-01 14 64935359 64935359 A G AKAP5 Missense_Mutation p.K83E 0.08 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GN-01 14 65007975 65007975 G - HSPA2 Frame_Shift_Del p.G138Afs*8 0.17 TCGA-HU-A4GN-01 14 65008766 65008766 C - HSPA2 Frame_Shift_Del p.P401Rfs*13 0.08 TCGA-HU-A4GN-01 14 66190983 66190983 A - FUT8 Frame_Shift_Del p.R403Efs*12 0.12 TCGA-HU-A4GN-01 14 72818835 72818835 C T RGS6 Silent p.D39D 0.21 TCGA-HU-A4GN-01 14 74205578 74205578 A C ELMSAN1 Missense_Mutation p.H378Q 0.22 tolerated(0.08) possibly_damaging(0.748) TCGA-HU-A4GN-01 14 74534179 74534179 G A ALDH6A1 Missense_Mutation p.R316C 0.29 deleterious(0) probably_damaging(1) TCGA-HU-A4GN-01 14 75513915 75513915 T C MLH3 Missense_Mutation p.D815G 0.06 deleterious(0.01) benign(0.034) TCGA-HU-A4GN-01 14 76123870 76123870 T - C14orf1 5'UTR 0.27 TCGA-HU-A4GN-01 14 76429726 76429726 G A TGFB3 Missense_Mutation p.R287W 0.24 deleterious(0) probably_damaging(0.96) TCGA-HU-A4GN-01 14 77492017 77492017 T C IRF2BPL Missense_Mutation p.M707V 0.17 tolerated(0.82) unknown(0) TCGA-HU-A4GN-01 14 77712359 77712359 G T TMEM63C Nonsense_Mutation p.G509* 0.09 TCGA-HU-A4GN-01 14 77715752 77715752 G A TMEM63C Silent p.A663A 0.27 TCGA-HU-A4GN-01 14 77732443 77732443 G T NGB 3'UTR 0.19 TCGA-HU-A4GN-01 14 80328022 80328022 G T NRXN3 Silent p.P967P 0.19 TCGA-HU-A4GN-01 14 93723553 93723553 G A BTBD7 Silent p.V532V 0.17 TCGA-HU-A4GN-01 14 94007040 94007040 C T UNC79 Nonsense_Mutation p.R286* 0.05 TCGA-HU-A4GN-01 14 95033573 95033573 C T SERPINA4 Missense_Mutation p.R306W 0.20 deleterious(0) possibly_damaging(0.802) TCGA-HU-A4GN-01 15 100802556 100802556 C T ADAMTS17 Splice_Site p.X291_splice 0.14 TCGA-HU-A4GN-01 15 101605617 101605617 C T LRRK1 Missense_Mutation p.R1659W 0.20 deleterious(0.04) benign(0.002) TCGA-HU-A4GN-01 15 23812238 23812238 T C MKRN3 Missense_Mutation p.S437P 0.19 tolerated(0.32) benign(0.002) TCGA-HU-A4GN-01 15 23889846 23889846 T G MAGEL2 Missense_Mutation p.Q412P 0.15 deleterious(0.01) benign(0.261) TCGA-HU-A4GN-01 15 28483908 28483908 A - HERC2 Frame_Shift_Del p.F1196Lfs*12 0.24 TCGA-HU-A4GN-01 15 33928729 33928729 C T RYR3 Silent p.F1178F 0.07 TCGA-HU-A4GN-01 15 38632012 38632012 G A SPRED1 Silent p.E166E 0.28 TCGA-HU-A4GN-01 15 39544753 39544753 C T C15orf54 Silent p.C139C 0.10 TCGA-HU-A4GN-01 15 39885727 39885727 A G THBS1 Missense_Mutation p.Q1042R 0.09 deleterious(0.01) probably_damaging(0.996) TCGA-HU-A4GN-01 15 40318214 40318214 C T EIF2AK4 Missense_Mutation p.R1476C 0.10 deleterious(0.02) benign(0.112) TCGA-HU-A4GN-01 15 40512768 40512768 A - BUB1B Frame_Shift_Del p.D989Mfs*13 0.12 TCGA-HU-A4GN-01 15 40849370 40849370 A G C15orf57 Intron 0.15 TCGA-HU-A4GN-01 15 40865952 40865952 A G RPUSD2 Missense_Mutation p.Q377R 0.14 deleterious(0) probably_damaging(1) TCGA-HU-A4GN-01 15 41188187 41188187 G A VPS18 Missense_Mutation p.R48H 0.09 deleterious(0.02) probably_damaging(0.943) TCGA-HU-A4GN-01 15 42151169 42151169 C T SPTBN5 Silent p.A2666A 0.27 TCGA-HU-A4GN-01 15 42371835 42371835 G A PLA2G4D Missense_Mutation p.A406V 0.09 deleterious(0.04) benign(0.011) TCGA-HU-A4GN-01 15 42602614 42602614 A G GANC Missense_Mutation p.N286D 0.16 probably_damaging(0.996) TCGA-HU-A4GN-01 15 43044744 43044745 - A TTBK2 Frame_Shift_Ins p.L900Ffs*13 0.18 TCGA-HU-A4GN-01 15 43627977 43627977 C T ADAL Silent p.H49H 0.15 TCGA-HU-A4GN-01 15 43654005 43654005 T G ZSCAN29 Missense_Mutation p.S609R 0.08 tolerated(0.88) benign(0.157) TCGA-HU-A4GN-01 15 43733757 43733757 T - TP53BP1 Frame_Shift_Del p.N1022Mfs*20 0.14 TCGA-HU-A4GN-01 15 44143344 44143344 C T WDR76 Silent p.S364S 0.24 TCGA-HU-A4GN-01 15 45250696 45250696 C T C15orf43 Missense_Mutation p.A91V 0.24 tolerated(0.15) benign(0.139) TCGA-HU-A4GN-01 15 45444607 45444607 G A DUOX1 Missense_Mutation p.R1106H 0.12 deleterious(0.04) probably_damaging(0.932) TCGA-HU-A4GN-01 15 48435038 48435038 A - MYEF2 3'UTR 0.18 TCGA-HU-A4GN-01 15 48543854 48543854 T - SLC12A1 Frame_Shift_Del p.F611Lfs*32 0.14 TCGA-HU-A4GN-01 15 49327620 49327620 A G SECISBP2L Missense_Mutation p.C147R 0.24 deleterious_low_confidence(0.04) benign(0.013) TCGA-HU-A4GN-01 15 50168644 50168644 C T ATP8B4 Missense_Mutation p.R953H 0.17 deleterious(0.02) benign(0.003) TCGA-HU-A4GN-01 15 51217295 51217295 G A AP4E1 Missense_Mutation p.D141N 0.14 deleterious(0) probably_damaging(1) TCGA-HU-A4GN-01 15 54306982 54306982 G T UNC13C Nonsense_Mutation p.G628* 0.11 TCGA-HU-A4GN-01 15 55790442 55790442 C T DYX1C1 Missense_Mutation p.R29K 0.10 tolerated(0.18) possibly_damaging(0.489) TCGA-HU-A4GN-01 15 55841142 55841142 C T PYGO1 Missense_Mutation p.S34N 0.19 deleterious(0) unknown(0) TCGA-HU-A4GN-01 15 55912892 55912892 A - PRTG Frame_Shift_Del p.F1056Sfs*30 0.23 TCGA-HU-A4GN-01 15 60297960 60297960 G A FOXB1 Silent p.T266T 0.25 TCGA-HU-A4GN-01 15 66191080 66191080 T - MEGF11 Frame_Shift_Del p.N987Ifs*44 0.22 TCGA-HU-A4GN-01 15 66819666 66819666 G A ZWILCH Nonsense_Mutation p.W286* 0.31 TCGA-HU-A4GN-01 15 66857094 66857094 C T LCTL Missense_Mutation p.V68I 0.10 tolerated(0.1) benign(0.009) TCGA-HU-A4GN-01 15 67757528 67757528 T C IQCH Missense_Mutation p.Y857H 0.12 deleterious(0) probably_damaging(0.975) TCGA-HU-A4GN-01 15 68445963 68445963 G A PIAS1 Silent p.L288L 0.17 TCGA-HU-A4GN-01 15 71535237 71535237 G A THSD4 Silent p.A238A 0.27 TCGA-HU-A4GN-01 15 73617395 73617395 T C HCN4 Missense_Mutation p.T627A 0.10 tolerated(0.05) unknown(0) TCGA-HU-A4GN-01 15 74032267 74032267 C - C15orf59 Frame_Shift_Del p.N293Tfs*29 0.15 TCGA-HU-A4GN-01 15 74836313 74836313 G A ARID3B Silent p.Q12Q 0.25 TCGA-HU-A4GN-01 15 74912475 74912475 G A CLK3 Missense_Mutation p.R241Q 0.10 tolerated(0.07) probably_damaging(0.968) TCGA-HU-A4GN-01 15 74919886 74919888 GAG - CLK3 In_Frame_Del p.E456del 0.27 TCGA-HU-A4GN-01 15 75091041 75091041 A G CSK Missense_Mutation p.D34G 0.15 deleterious(0) possibly_damaging(0.699) TCGA-HU-A4GN-01 15 75648732 75648732 C A MAN2C1 Missense_Mutation p.L949F 0.28 tolerated(0.56) possibly_damaging(0.476) TCGA-HU-A4GN-01 15 75676749 75676749 A G SIN3A Silent p.C1017C 0.25 TCGA-HU-A4GN-01 15 76074725 76074725 G - RN7SL319P 5'Flank 0.08 TCGA-HU-A4GN-01 15 76673718 76673718 C A SCAPER Splice_Site p.X1235_splice 0.11 TCGA-HU-A4GN-01 15 76995242 76995242 G - SCAPER Frame_Shift_Del p.K784Nfs*2 0.09 TCGA-HU-A4GN-01 15 78217339 78217339 T - RP11-114H24.7 3'Flank 0.16 TCGA-HU-A4GN-01 15 81592247 81592247 G T IL16 Missense_Mutation p.Q860H 0.23 deleterious(0.01) possibly_damaging(0.62) TCGA-HU-A4GN-01 15 85406054 85406054 C A ALPK3 Missense_Mutation p.R1642S 0.10 tolerated(0.13) possibly_damaging(0.892) TCGA-HU-A4GN-01 15 86312936 86312936 G T KLHL25 Missense_Mutation p.L36I 0.07 deleterious(0.02) probably_damaging(0.994) TCGA-HU-A4GN-01 15 90809018 90809018 G - NGRN Frame_Shift_Del p.V27Wfs*31 0.12 TCGA-HU-A4GN-01 15 91450046 91450046 C T MAN2A2 Silent p.A304A 0.10 TCGA-HU-A4GN-01 15 99467855 99467856 - TC IGF1R Frame_Shift_Ins p.G912Lfs*26 0.08 TCGA-HU-A4GN-01 16 108438 108438 G A RHBDF1 Silent p.Y823Y 0.05 TCGA-HU-A4GN-01 16 11969760 11969760 T - GSPT1 Frame_Shift_Del p.K573Nfs*23 0.17 TCGA-HU-A4GN-01 16 1270496 1270496 C - CACNA1H Frame_Shift_Del p.C2191Afs*26 0.19 TCGA-HU-A4GN-01 16 1306823 1306823 A G TPSD1 Missense_Mutation p.R94G 0.13 deleterious(0.02) benign(0.383) TCGA-HU-A4GN-01 16 1502845 1502845 C T CLCN7 Missense_Mutation p.A422T 0.25 tolerated(0.08) benign(0.393) TCGA-HU-A4GN-01 16 15222202 15222202 G A RP11-1186N24.5 RNA 0.13 TCGA-HU-A4GN-01 16 1536186 1536186 G - PTX4 Frame_Shift_Del p.G393Efs*57 0.24 TCGA-HU-A4GN-01 16 19514868 19514869 TT - GDE1 Frame_Shift_Del p.K307Efs*14 0.08 TCGA-HU-A4GN-01 16 19883215 19883215 G A GPRC5B Missense_Mutation p.T318M 0.10 deleterious(0.02) probably_damaging(0.999) TCGA-HU-A4GN-01 16 19883779 19883779 C T GPRC5B Missense_Mutation p.G130D 0.10 deleterious(0) probably_damaging(1) TCGA-HU-A4GN-01 16 2009662 2009662 C - NDUFB10 Frame_Shift_Del p.P14Rfs*14 0.16 TCGA-HU-A4GN-01 16 2122296 2122296 C T TSC2 Missense_Mutation p.R718C 0.19 deleterious(0) possibly_damaging(0.577) TCGA-HU-A4GN-01 16 21261128 21261128 G A ANKS4B Missense_Mutation p.V81I 0.07 tolerated(0.08) benign(0.196) TCGA-HU-A4GN-01 16 21702982 21702982 T C OTOA Missense_Mutation p.I238T 0.07 deleterious(0.04) possibly_damaging(0.662) TCGA-HU-A4GN-01 16 2218083 2218083 G A TRAF7 Missense_Mutation p.G49R 0.34 deleterious_low_confidence(0.04) benign(0.005) TCGA-HU-A4GN-01 16 2333309 2333309 G A ABCA3 Missense_Mutation p.R1305W 0.19 deleterious(0) probably_damaging(0.955) TCGA-HU-A4GN-01 16 23430031 23430031 G A COG7 Missense_Mutation p.A376V 0.07 tolerated(0.1) benign(0.099) TCGA-HU-A4GN-01 16 24834864 24834864 C T TNRC6A Silent p.L1875L 0.21 TCGA-HU-A4GN-01 16 2522140 2522140 G A NTN3 Silent p.P146P 0.16 TCGA-HU-A4GN-01 16 25268437 25268437 G A ZKSCAN2 Silent p.A4A 0.22 TCGA-HU-A4GN-01 16 27455956 27455956 C T IL21R Missense_Mutation p.R201W 0.21 deleterious(0) probably_damaging(1) TCGA-HU-A4GN-01 16 28844506 28844506 G A ATXN2L Missense_Mutation p.V596I 0.11 tolerated(0.16) benign(0.059) TCGA-HU-A4GN-01 16 2987367 2987367 G A FLYWCH1 Missense_Mutation p.A586T 0.16 tolerated(0.4) possibly_damaging(0.493) TCGA-HU-A4GN-01 16 29912905 29912905 G A ASPHD1 Missense_Mutation p.A205T 0.09 deleterious(0.04) benign(0.07) TCGA-HU-A4GN-01 16 29997869 29997869 C A TAOK2 Missense_Mutation p.P759H 0.13 deleterious_low_confidence(0) benign(0.276) TCGA-HU-A4GN-01 16 30096043 30096043 G A PPP4C Missense_Mutation p.V221M 0.15 deleterious(0) probably_damaging(0.922) TCGA-HU-A4GN-01 16 30097591 30097591 G A TBX6 Silent p.T422T 0.24 TCGA-HU-A4GN-01 16 3073266 3073266 G - HCFC1R1 Frame_Shift_Del p.M84* 0.23 TCGA-HU-A4GN-01 16 30762576 30762576 G A PHKG2 Missense_Mutation p.R82H 0.11 tolerated(0.06) benign(0.002) TCGA-HU-A4GN-01 16 30977128 30977128 G A SETD1A Silent p.P642P 0.16 TCGA-HU-A4GN-01 16 31196405 31196405 C T FUS Silent p.G223G 0.28 TCGA-HU-A4GN-01 16 31196420 31196420 C T FUS Silent p.G228G 0.39 TCGA-HU-A4GN-01 16 31228252 31228252 C T PYDC1 Missense_Mutation p.R33H 0.12 deleterious(0.03) benign(0.351) TCGA-HU-A4GN-01 16 31342529 31342529 C T ITGAM Missense_Mutation p.P1108L 0.20 deleterious(0.02) probably_damaging(1) TCGA-HU-A4GN-01 16 31439084 31439084 C T COX6A2 3'UTR 0.28 TCGA-HU-A4GN-01 16 3304219 3304219 C T MEFV Silent p.P283P 0.22 TCGA-HU-A4GN-01 16 3458468 3458468 G A ZNF174 Missense_Mutation p.R258Q 0.11 tolerated(0.25) benign(0.004) TCGA-HU-A4GN-01 16 3781384 3781384 T C CREBBP Missense_Mutation p.M1661V 0.17 unknown(0) TCGA-HU-A4GN-01 16 425384 425384 G A TMEM8A Missense_Mutation p.P426S 0.11 deleterious(0) possibly_damaging(0.899) TCGA-HU-A4GN-01 16 4390324 4390324 G A CORO7-PAM16 Missense_Mutation p.T1048M 0.20 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-HU-A4GN-01 16 47674948 47674948 C T PHKB Silent p.G487G 0.17 TCGA-HU-A4GN-01 16 47684785 47684785 A - PHKB Frame_Shift_Del p.G644Efs*2 0.18 TCGA-HU-A4GN-01 16 49315263 49315263 G A CBLN1 Silent p.C38C 0.11 TCGA-HU-A4GN-01 16 51173541 51173541 A G SALL1 Silent p.A864A 0.15 TCGA-HU-A4GN-01 16 57794956 57794956 G A KIFC3 Missense_Mutation p.T667M 0.10 tolerated(0.2) benign(0.124) TCGA-HU-A4GN-01 16 57828936 57828936 G A KIFC3 Missense_Mutation p.P97L 0.19 deleterious_low_confidence(0.01) benign(0.276) TCGA-HU-A4GN-01 16 64984700 64984700 C T CDH11 Missense_Mutation p.A622T 0.12 deleterious(0.02) probably_damaging(0.996) TCGA-HU-A4GN-01 16 67037006 67037006 C T CES4A Missense_Mutation p.R242W 0.18 deleterious(0.02) probably_damaging(0.971) TCGA-HU-A4GN-01 16 67222722 67222722 A G EXOC3L1 Missense_Mutation p.M110T 0.15 tolerated(0.45) benign(0.002) TCGA-HU-A4GN-01 16 67262891 67262891 G A TMEM208 Missense_Mutation p.A133T 0.05 deleterious(0.01) probably_damaging(0.998) TCGA-HU-A4GN-01 16 67293845 67293845 G A SLC9A5 Missense_Mutation p.R613H 0.17 deleterious(0.03) probably_damaging(0.999) TCGA-HU-A4GN-01 16 67477083 67477083 T G ATP6V0D1 Splice_Site p.X161_splice 0.12 TCGA-HU-A4GN-01 16 67478439 67478439 G A ATP6V0D1 Missense_Mutation p.T158M 0.23 deleterious(0) probably_damaging(0.997) TCGA-HU-A4GN-01 16 69148385 69148385 G C HAS3 Missense_Mutation p.S293T 0.16 tolerated(0.27) benign(0.005) TCGA-HU-A4GN-01 16 69727392 69727392 C T NFAT5 Missense_Mutation p.P1222S 0.16 benign(0) TCGA-HU-A4GN-01 16 70359496 70359496 C T DDX19B Missense_Mutation p.T171M 0.18 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GN-01 16 70765531 70765531 C A VAC14 Splice_Site p.X510_splice 0.07 TCGA-HU-A4GN-01 16 74908338 74908338 G A WDR59 Silent p.F898F 0.09 TCGA-HU-A4GN-01 16 75690558 75690558 A - TERF2IP 3'UTR 0.37 TCGA-HU-A4GN-01 16 79632973 79632973 C T MAF Missense_Mutation p.R276Q 0.12 deleterious(0) probably_damaging(0.991) TCGA-HU-A4GN-01 16 81641248 81641248 C T CMIP Missense_Mutation p.P126L 0.21 tolerated(0.59) possibly_damaging(0.886) TCGA-HU-A4GN-01 16 816414 816414 G A MSLN Missense_Mutation p.R385H 0.23 tolerated(0.4) benign(0.023) TCGA-HU-A4GN-01 16 84520283 84520283 G A TLDC1 Silent p.F304F 0.27 TCGA-HU-A4GN-01 16 85112049 85112049 C T KIAA0513 Missense_Mutation p.R271W 0.17 deleterious(0.02) benign(0.276) TCGA-HU-A4GN-01 16 85701857 85701857 G T GSE1 Missense_Mutation p.G1081V 0.12 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GN-01 16 86612303 86612303 G T FOXL1 5'UTR 0.22 TCGA-HU-A4GN-01 16 88666260 88666260 C T ZC3H18 Missense_Mutation p.T331M 0.22 deleterious_low_confidence(0) unknown(0) TCGA-HU-A4GN-01 16 88781638 88781638 C T CTU2 Silent p.D509D 0.07 TCGA-HU-A4GN-01 16 88872228 88872228 C T CDT1 Silent p.G261G 0.17 TCGA-HU-A4GN-01 16 88876126 88876128 AGA - APRT In_Frame_Del p.F174del 0.17 TCGA-HU-A4GN-01 16 89245841 89245841 G T CDH15 Missense_Mutation p.L20F 0.14 tolerated(0.42) benign(0) TCGA-HU-A4GN-01 16 89254627 89254627 C T CDH15 Silent p.D304D 0.12 TCGA-HU-A4GN-01 16 89349838 89349838 T - ANKRD11 Frame_Shift_Del p.S1038Vfs*280 0.24 TCGA-HU-A4GN-01 16 89661933 89661933 C T CPNE7 Silent p.D562D 0.28 TCGA-HU-A4GN-01 16 90001671 90001671 C - TUBB3 Frame_Shift_Del p.L273Sfs*12 0.08 TCGA-HU-A4GN-01 17 11840771 11840771 A G DNAH9 Missense_Mutation p.T4198A 0.26 possibly_damaging(0.491) TCGA-HU-A4GN-01 17 1410361 1410361 T C INPP5K Missense_Mutation p.D230G 0.17 deleterious(0.04) benign(0.441) TCGA-HU-A4GN-01 17 1579520 1579520 G A PRPF8 Missense_Mutation p.R845W 0.12 deleterious(0) possibly_damaging(0.88) TCGA-HU-A4GN-01 17 17720296 17720296 C G SREBF1 Missense_Mutation p.K617N 0.08 deleterious(0) possibly_damaging(0.839) TCGA-HU-A4GN-01 17 17754260 17754260 C T TOM1L2 Missense_Mutation p.V429I 0.12 tolerated(0.17) benign(0.158) TCGA-HU-A4GN-01 17 18054563 18054563 C T MYO15A Missense_Mutation p.A2538V 0.10 unknown(0) TCGA-HU-A4GN-01 17 18145266 18145266 G T LLGL1 Silent p.P945P 0.24 TCGA-HU-A4GN-01 17 1840254 1840254 G A RTN4RL1 Missense_Mutation p.R288W 0.25 deleterious(0.03) benign(0.001) TCGA-HU-A4GN-01 17 19286555 19286555 C A MAPK7 3'UTR 0.06 TCGA-HU-A4GN-01 17 19287914 19287914 C T MFAP4 Missense_Mutation p.R234H 0.17 tolerated(0.07) benign(0.066) TCGA-HU-A4GN-01 17 21319768 21319768 G A KCNJ12 Missense_Mutation p.A372T 0.11 tolerated(0.53) benign(0.011) TCGA-HU-A4GN-01 17 25783858 25783858 T C KSR1 Silent p.A63A 0.12 TCGA-HU-A4GN-01 17 2579802 2579802 A - PAFAH1B1 Frame_Shift_Del p.S304Vfs*29 0.23 TCGA-HU-A4GN-01 17 25958317 25958320 CCTA - LGALS9 Frame_Shift_Del p.Y10* 0.16 TCGA-HU-A4GN-01 17 263498 263498 C - C17orf97 Frame_Shift_Del p.E290Rfs*128 0.18 TCGA-HU-A4GN-01 17 26449740 26449740 T - NLK Frame_Shift_Del p.F192Lfs*30 0.24 TCGA-HU-A4GN-01 17 26731940 26731940 C T SLC46A1 Missense_Mutation p.A259T 0.07 tolerated(0.32) possibly_damaging(0.557) TCGA-HU-A4GN-01 17 27284384 27284384 G A SEZ6 Missense_Mutation p.R826W 0.05 deleterious(0) probably_damaging(0.997) TCGA-HU-A4GN-01 17 27901556 27901556 G A GIT1 3'UTR 0.17 TCGA-HU-A4GN-01 17 29552151 29552151 C T NF1 Silent p.Y628Y 0.17 TCGA-HU-A4GN-01 17 30322710 30322710 C T SUZ12 Missense_Mutation p.R575C 0.09 deleterious(0) probably_damaging(1) TCGA-HU-A4GN-01 17 33592319 33592319 C - SLFN5 Frame_Shift_Del p.P698Lfs*21 0.22 TCGA-HU-A4GN-01 17 34934411 34934411 A G GGNBP2 Splice_Site p.X214_splice 0.11 TCGA-HU-A4GN-01 17 34937904 34937905 - GT GGNBP2 Frame_Shift_Ins p.D388Vfs*15 0.07 TCGA-HU-A4GN-01 17 36453081 36453081 A G MRPL45 5'UTR 0.21 TCGA-HU-A4GN-01 17 3651342 3651342 G A ITGAE Missense_Mutation p.R677W 0.09 deleterious(0) probably_damaging(0.97) TCGA-HU-A4GN-01 17 36872882 36872882 G A MLLT6 Silent p.T433T 0.14 TCGA-HU-A4GN-01 17 39767710 39767710 C T KRT16 Missense_Mutation p.V220I 0.25 tolerated(1) benign(0.01) TCGA-HU-A4GN-01 17 39777909 39777909 C T KRT17 Missense_Mutation p.R257H 0.20 deleterious(0.01) possibly_damaging(0.88) TCGA-HU-A4GN-01 17 40272728 40272728 G T KAT2A Silent p.P153P 0.10 TCGA-HU-A4GN-01 17 40879741 40879742 - T EZH1 Frame_Shift_Ins p.T53Nfs*6 0.11 TCGA-HU-A4GN-01 17 40932962 40932962 C - WNK4 Frame_Shift_Del p.D85Ifs*32 0.18 TCGA-HU-A4GN-01 17 41244889 41244889 C T BRCA1 Missense_Mutation p.A887T 0.16 tolerated(0.16) benign(0.098) TCGA-HU-A4GN-01 17 42272803 42272803 C T ATXN7L3 Missense_Mutation p.R209H 0.09 tolerated(0.08) benign(0.016) TCGA-HU-A4GN-01 17 43037709 43037709 G A C1QL1 Silent p.D208D 0.16 TCGA-HU-A4GN-01 17 43907907 43907907 G A CRHR1 Missense_Mutation p.R256H 0.06 deleterious(0.01) benign(0.035) TCGA-HU-A4GN-01 17 4510676 4510676 G A SMTNL2 Missense_Mutation p.R427H 0.17 deleterious(0) probably_damaging(1) TCGA-HU-A4GN-01 17 4594216 4594216 C T PELP1 Silent p.V129V 0.23 TCGA-HU-A4GN-01 17 46136685 46136685 G A NFE2L1 Silent p.A667A 0.14 TCGA-HU-A4GN-01 17 46670721 46670721 G A HOXB5 Silent p.H108H 0.25 TCGA-HU-A4GN-01 17 46673804 46673804 C T HOXB6 Missense_Mutation p.E216K 0.30 deleterious_low_confidence(0.04) unknown(0) TCGA-HU-A4GN-01 17 47583740 47583740 G A NGFR Silent p.S96S 0.15 TCGA-HU-A4GN-01 17 48613990 48613990 C T EPN3 Missense_Mutation p.R25C 0.22 deleterious(0) probably_damaging(1) TCGA-HU-A4GN-01 17 48735469 48735471 CAC - ABCC3 In_Frame_Del p.T173del 0.08 TCGA-HU-A4GN-01 17 48742598 48742598 G A ABCC3 Missense_Mutation p.A475T 0.24 tolerated(1) benign(0.044) TCGA-HU-A4GN-01 17 50212314 50212314 C T CA10 Intron 0.20 TCGA-HU-A4GN-01 17 5085407 5085407 T C ZNF594 Silent p.K715K 0.26 TCGA-HU-A4GN-01 17 56435161 56435161 C - RNF43 Frame_Shift_Del p.G659Vfs*41 0.18 TCGA-HU-A4GN-01 17 60768086 60768086 C T MRC2 Missense_Mutation p.R1326W 0.19 tolerated(0.11) benign(0.009) TCGA-HU-A4GN-01 17 61744392 61744392 C T MAP3K3 Silent p.P189P 0.17 TCGA-HU-A4GN-01 17 66033572 66033572 T C KPNA2 Silent p.D58D 0.08 TCGA-HU-A4GN-01 17 66416650 66416650 A G ARSG 3'UTR 0.08 TCGA-HU-A4GN-01 17 66511558 66511558 C T PRKAR1A Silent p.T6T 0.22 TCGA-HU-A4GN-01 17 68128882 68128882 C T KCNJ16 Silent p.A218A 0.21 TCGA-HU-A4GN-01 17 6927490 6927490 G A BCL6B Missense_Mutation p.A90T 0.09 tolerated(0.35) benign(0.013) TCGA-HU-A4GN-01 17 7126627 7126627 C T ACADVL Intron 0.08 TCGA-HU-A4GN-01 17 7139748 7139748 G - PHF23 Frame_Shift_Del p.V167Cfs*57 0.22 TCGA-HU-A4GN-01 17 7227488 7227488 G A NEURL4 Silent p.G667G 0.09 TCGA-HU-A4GN-01 17 73144758 73144758 C T HN1 Missense_Mutation p.R22Q 0.11 tolerated_low_confidence(0.24) probably_damaging(0.99) TCGA-HU-A4GN-01 17 73565191 73565191 C T LLGL2 Silent p.D485D 0.25 TCGA-HU-A4GN-01 17 73945316 73945316 G A ACOX1 Silent p.N570N 0.08 TCGA-HU-A4GN-01 17 74562348 74562348 A G ST6GALNAC2 Silent p.S321S 0.25 TCGA-HU-A4GN-01 17 7463439 7463470 TGGTGTCCGAATCCAGGATGCTGGAGTTTATC - TNFSF12-TNFSF13 Frame_Shift_Del p.G234Afs*3 0.21 TCGA-HU-A4GN-01 17 7579313 7579313 G A TP53 Missense_Mutation p.T125M 0.16 deleterious(0.03) probably_damaging(0.996) TCGA-HU-A4GN-01 17 77926601 77926601 C T TBC1D16 Missense_Mutation p.D266N 0.17 tolerated(0.1) benign(0.035) TCGA-HU-A4GN-01 17 78865536 78865536 T C RPTOR Missense_Mutation p.L667P 0.12 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GN-01 17 78971112 78971112 A G CHMP6 Missense_Mutation p.I156V 0.25 tolerated(1) benign(0.022) TCGA-HU-A4GN-01 17 7942761 7942761 G A ALOX15B Missense_Mutation p.V69M 0.23 deleterious(0) possibly_damaging(0.872) TCGA-HU-A4GN-01 17 79637353 79637353 G A CCDC137 Missense_Mutation p.G123R 0.08 tolerated(0.96) benign(0.021) TCGA-HU-A4GN-01 17 7976517 7976517 C T ALOX12B Silent p.T625T 0.14 TCGA-HU-A4GN-01 17 79792774 79792774 C T PPP1R27 Missense_Mutation p.R19Q 0.09 tolerated(0.12) probably_damaging(0.968) TCGA-HU-A4GN-01 17 80446043 80446043 A T NARF 3'UTR 0.20 TCGA-HU-A4GN-01 17 8221898 8221898 G A ARHGEF15 Missense_Mutation p.R597H 0.16 deleterious(0.03) probably_damaging(0.968) TCGA-HU-A4GN-01 17 8222917 8222917 T C ARHGEF15 Silent p.P790P 0.07 TCGA-HU-A4GN-01 17 910465 910465 C A ABR Silent p.V810V 0.12 TCGA-HU-A4GN-01 17 9873070 9873070 T C GAS7 Missense_Mutation p.Y132C 0.18 tolerated_low_confidence(0.13) benign(0.002) TCGA-HU-A4GN-01 18 21759794 21759794 T G OSBPL1A Silent p.V606V 0.07 TCGA-HU-A4GN-01 18 23866046 23866046 G A TAF4B Silent p.V391V 0.18 TCGA-HU-A4GN-01 18 29867794 29867794 G A GAREM Missense_Mutation p.P256S 0.14 tolerated(0.14) probably_damaging(0.946) TCGA-HU-A4GN-01 18 34359523 34359523 G A FHOD3 3'UTR 0.16 TCGA-HU-A4GN-01 18 40323632 40323632 A - RIT2 Frame_Shift_Del p.F160Lfs*18 0.15 TCGA-HU-A4GN-01 18 42643610 42643610 A - SETBP1 Frame_Shift_Del p.A1581Pfs*30 0.35 TCGA-HU-A4GN-01 18 43248435 43248435 A G SLC14A2 Missense_Mutation p.M677V 0.12 tolerated(0.09) benign(0.029) TCGA-HU-A4GN-01 18 5419778 5419778 C T EPB41L3 Missense_Mutation p.E480K 0.25 deleterious(0.03) benign(0.206) TCGA-HU-A4GN-01 18 5433504 5433504 T - EPB41L3 Frame_Shift_Del p.K292Nfs*7 0.26 TCGA-HU-A4GN-01 18 56149219 56149219 C A ALPK2 Missense_Mutation p.A2117S 0.09 deleterious(0.01) probably_damaging(0.985) TCGA-HU-A4GN-01 18 58038578 58038578 C A MC4R 3'UTR 0.17 TCGA-HU-A4GN-01 18 5891517 5891517 G A TMEM200C Silent p.C182C 0.10 TCGA-HU-A4GN-01 18 59966066 59966066 A - KIAA1468 Frame_Shift_Del p.N1169Tfs*17 0.10 TCGA-HU-A4GN-01 18 66358524 66358524 G A TMX3 Intron 0.14 TCGA-HU-A4GN-01 18 70534535 70534535 G A NETO1 5'UTR 0.25 TCGA-HU-A4GN-01 18 74153912 74153912 C T ZNF516 Missense_Mutation p.A367T 0.22 tolerated(0.4) benign(0.287) TCGA-HU-A4GN-01 18 76754898 76754898 G T SALL3 Missense_Mutation p.R969S 0.21 deleterious(0.04) benign(0.325) TCGA-HU-A4GN-01 18 77623823 77623823 C T KCNG2 Silent p.H52H 0.25 TCGA-HU-A4GN-01 18 8825914 8825914 G A SOGA2 Missense_Mutation p.R1469Q 0.17 deleterious(0.05) benign(0.16) TCGA-HU-A4GN-01 19 10220919 10220919 C T PPAN Silent p.T273T 0.14 TCGA-HU-A4GN-01 19 10906072 10906072 C T DNM2 Nonsense_Mutation p.R385* 0.10 TCGA-HU-A4GN-01 19 1147381 1147381 G T SBNO2 Missense_Mutation p.P69H 0.19 tolerated_low_confidence(0.12) benign(0.01) TCGA-HU-A4GN-01 19 11531506 11531506 G T CCDC151 Silent p.S595S 0.25 TCGA-HU-A4GN-01 19 11545825 11545827 GAG - CCDC151 In_Frame_Del p.P4del 0.19 TCGA-HU-A4GN-01 19 12255994 12255994 C T ZNF625 3'Flank 0.08 TCGA-HU-A4GN-01 19 1272348 1272348 G A CIRBP Intron 0.26 TCGA-HU-A4GN-01 19 12812592 12812592 C T TNPO2 Missense_Mutation p.G829S 0.09 tolerated(0.96) benign(0.002) TCGA-HU-A4GN-01 19 12985260 12985260 G A MAST1 Missense_Mutation p.G1430D 0.10 deleterious_low_confidence(0) benign(0.152) TCGA-HU-A4GN-01 19 13249068 13249068 A G NACC1 Missense_Mutation p.K478E 0.21 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GN-01 19 13941204 13941204 C T ZSWIM4 Silent p.C770C 0.17 TCGA-HU-A4GN-01 19 15226969 15226969 C T ILVBL Missense_Mutation p.D489N 0.19 deleterious(0) probably_damaging(1) TCGA-HU-A4GN-01 19 15281358 15281358 G A NOTCH3 Missense_Mutation p.P1633L 0.25 tolerated(0.14) benign(0.004) TCGA-HU-A4GN-01 19 15533994 15533994 G A WIZ Missense_Mutation p.R760W 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-HU-A4GN-01 19 15586525 15586525 C T PGLYRP2 Missense_Mutation p.R319Q 0.25 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GN-01 19 15661545 15661545 G A CYP4F22 Missense_Mutation p.V466M 0.07 tolerated(0.08) benign(0.047) TCGA-HU-A4GN-01 19 17442127 17442127 G A ANO8 Missense_Mutation p.A227V 0.08 deleterious(0.01) probably_damaging(0.946) TCGA-HU-A4GN-01 19 17664122 17664122 C T FAM129C Missense_Mutation p.A615V 0.19 tolerated_low_confidence(0.1) benign(0.005) TCGA-HU-A4GN-01 19 1796868 1796868 T C ATP8B3 Missense_Mutation p.Y532C 0.14 deleterious(0.01) probably_damaging(0.95) TCGA-HU-A4GN-01 19 18278091 18278091 C T PIK3R2 Missense_Mutation p.R571C 0.14 deleterious(0) benign(0.101) TCGA-HU-A4GN-01 19 18368676 18368676 C - KIAA1683 Frame_Shift_Del p.A1140Pfs*96 0.28 TCGA-HU-A4GN-01 19 18967816 18967816 T C UPF1 Missense_Mutation p.L652P 0.22 deleterious(0.03) probably_damaging(0.933) TCGA-HU-A4GN-01 19 1969862 1969862 C T CSNK1G2 Missense_Mutation p.R31W 0.12 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-HU-A4GN-01 19 19744697 19744697 T C GMIP Missense_Mutation p.Q796R 0.27 tolerated(0.56) benign(0.013) TCGA-HU-A4GN-01 19 19765378 19765378 G A ATP13A1 Missense_Mutation p.T596M 0.20 tolerated(0.1) benign(0.219) TCGA-HU-A4GN-01 19 1979024 1979024 C T CSNK1G2 Missense_Mutation p.P205L 0.25 deleterious(0.01) possibly_damaging(0.903) TCGA-HU-A4GN-01 19 20235986 20235986 G A CTC-260E6.2 RNA 0.33 TCGA-HU-A4GN-01 19 21300088 21300088 C T ZNF714 Silent p.G206G 0.08 TCGA-HU-A4GN-01 19 2132534 2132534 G A AP3D1 Missense_Mutation p.T133M 0.18 deleterious(0.03) benign(0.357) TCGA-HU-A4GN-01 19 22255611 22255611 G A ZNF257 Missense_Mutation p.G2R 0.11 deleterious(0.03) probably_damaging(0.951) TCGA-HU-A4GN-01 19 22363522 22363522 C T ZNF676 Missense_Mutation p.G333R 0.13 deleterious(0.04) probably_damaging(0.993) TCGA-HU-A4GN-01 19 2249534 2249534 C - AMH Frame_Shift_Del p.L70Cfs*7 0.31 TCGA-HU-A4GN-01 19 23941599 23941599 C T ZNF681 5'UTR 0.10 TCGA-HU-A4GN-01 19 30106265 30106265 C T POP4 Missense_Mutation p.A214V 0.12 tolerated(0.59) benign(0.003) TCGA-HU-A4GN-01 19 3028733 3028735 TTC - TLE2 In_Frame_Del p.E31del 0.14 TCGA-HU-A4GN-01 19 35786696 35786696 C T MAG Missense_Mutation p.S76L 0.09 deleterious(0) probably_damaging(0.926) TCGA-HU-A4GN-01 19 36053496 36053496 C A ATP4A Silent p.G87G 0.19 TCGA-HU-A4GN-01 19 36216189 36216189 C - KMT2B Frame_Shift_Del p.P1201Rfs*154 0.17 TCGA-HU-A4GN-01 19 36357214 36357214 C - KIRREL2 Frame_Shift_Del p.C652Afs*79 0.28 TCGA-HU-A4GN-01 19 36370038 36370038 C T APLP1 Silent p.G592G 0.07 TCGA-HU-A4GN-01 19 36394742 36394742 G A HCST Missense_Mutation p.A60T 0.10 deleterious_low_confidence(0.02) benign(0.021) TCGA-HU-A4GN-01 19 37006132 37006132 G A ZNF260 Silent p.G3G 0.19 TCGA-HU-A4GN-01 19 37310583 37310583 A G ZNF790 Silent p.T221T 0.23 TCGA-HU-A4GN-01 19 3747947 3747947 G - TJP3 Frame_Shift_Del p.Y839Tfs*64 0.10 TCGA-HU-A4GN-01 19 3819148 3819148 G A ZFR2 Missense_Mutation p.A609V 0.22 deleterious(0) benign(0.309) TCGA-HU-A4GN-01 19 38573183 38573183 C - SIPA1L3 Frame_Shift_Del p.P328Rfs*78 0.16 TCGA-HU-A4GN-01 19 38704286 38704286 C T DPF1 Missense_Mutation p.D364N 0.26 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GN-01 19 39221758 39221758 G A CAPN12 Missense_Mutation p.T688I 0.27 tolerated(0.4) benign(0.005) TCGA-HU-A4GN-01 19 39229238 39229238 C T CAPN12 Silent p.A260A 0.23 TCGA-HU-A4GN-01 19 39230770 39230773 AGAT - CAPN12 Frame_Shift_Del p.Y216* 0.21 TCGA-HU-A4GN-01 19 39734465 39734465 T - IFNL3 Frame_Shift_Del p.K164Rfs*23 0.13 TCGA-HU-A4GN-01 19 4013139 4013139 C - PIAS4 Frame_Shift_Del p.L84* 0.09 TCGA-HU-A4GN-01 19 40316563 40316563 G - DYRK1B Frame_Shift_Del p.P561Rfs*3 0.24 TCGA-HU-A4GN-01 19 40485978 40485978 C T PSMC4 Silent p.A281A 0.14 TCGA-HU-A4GN-01 19 40743902 40743902 G A AKT2 Missense_Mutation p.R269W 0.11 deleterious(0.01) possibly_damaging(0.893) TCGA-HU-A4GN-01 19 4099243 4099243 T C MAP2K2 Missense_Mutation p.H292R 0.23 tolerated(0.54) benign(0.008) TCGA-HU-A4GN-01 19 41249853 41249853 C T C19orf54 Silent p.P225P 0.18 TCGA-HU-A4GN-01 19 41594939 41594941 GAG - CYP2A13 In_Frame_Del p.E97del 0.16 TCGA-HU-A4GN-01 19 41798223 41798223 T A HNRNPUL1 Missense_Mutation p.I358N 0.30 deleterious(0) unknown(0) TCGA-HU-A4GN-01 19 42132059 42132059 G T CEACAM4 Missense_Mutation p.L114M 0.07 tolerated(0.05) benign(0.439) TCGA-HU-A4GN-01 19 42546801 42546801 C T GRIK5 Missense_Mutation p.R459H 0.18 tolerated(0.13) possibly_damaging(0.839) TCGA-HU-A4GN-01 19 42729088 42729088 C A ZNF526 Missense_Mutation p.P178H 0.18 tolerated(0.08) benign(0.004) TCGA-HU-A4GN-01 19 42933119 42933119 G T CXCL17 Missense_Mutation p.H93N 0.07 deleterious(0.01) possibly_damaging(0.866) TCGA-HU-A4GN-01 19 44039443 44039443 C T ZNF575 Silent p.S114S 0.07 TCGA-HU-A4GN-01 19 4409665 4409665 C T CHAF1A Missense_Mutation p.P290L 0.30 tolerated(0.69) unknown(0) TCGA-HU-A4GN-01 19 4446179 4446179 C T UBXN6 Missense_Mutation p.R356Q 0.25 tolerated(0.07) probably_damaging(0.986) TCGA-HU-A4GN-01 19 44740799 44740799 C T ZNF227 Missense_Mutation p.T739I 0.25 deleterious(0.04) benign(0.008) TCGA-HU-A4GN-01 19 44778460 44778460 G A ZNF233 Silent p.S549S 0.25 TCGA-HU-A4GN-01 19 45262050 45262050 C A BCL3 Silent p.R377R 0.17 TCGA-HU-A4GN-01 19 45573816 45573816 G A CLASRP Missense_Mutation p.R660Q 0.24 deleterious_low_confidence(0.01) unknown(0) TCGA-HU-A4GN-01 19 45856015 45856015 G A ERCC2 Missense_Mutation p.R631C 0.11 deleterious(0) probably_damaging(0.988) TCGA-HU-A4GN-01 19 46269033 46269033 G A SIX5 Missense_Mutation p.A649V 0.24 tolerated(0.7) benign(0.033) TCGA-HU-A4GN-01 19 46299296 46299296 G T RSPH6A Missense_Mutation p.P662Q 0.17 deleterious(0) probably_damaging(0.996) TCGA-HU-A4GN-01 19 46444150 46444150 G A NOVA2 Silent p.G150G 0.10 TCGA-HU-A4GN-01 19 4690888 4690888 A G DPP9 Splice_Site p.X532_splice 0.08 TCGA-HU-A4GN-01 19 47177801 47177801 C T PRKD2 Silent p.A872A 0.09 TCGA-HU-A4GN-01 19 47712468 47712468 T C SAE1 Missense_Mutation p.M334T 0.08 tolerated(0.74) benign(0.023) TCGA-HU-A4GN-01 19 47858495 47858495 G A DHX34 Missense_Mutation p.R302Q 0.19 deleterious(0.02) probably_damaging(0.988) TCGA-HU-A4GN-01 19 48918247 48918247 C T GRIN2D Silent p.H513H 0.28 TCGA-HU-A4GN-01 19 49183678 49183678 A G RN7SL345P 5'Flank 0.22 TCGA-HU-A4GN-01 19 49298641 49298642 GA - BCAT2 3'UTR 0.29 TCGA-HU-A4GN-01 19 4944449 4944449 G A UHRF1 RNA 0.14 TCGA-HU-A4GN-01 19 49575417 49575417 C T KCNA7 Silent p.A142A 0.14 TCGA-HU-A4GN-01 19 50208537 50208537 A G CPT1C Missense_Mutation p.I316V 0.08 tolerated(0.35) benign(0.004) TCGA-HU-A4GN-01 19 50210827 50210827 C A CPT1C Missense_Mutation p.L466I 0.08 tolerated(0.35) possibly_damaging(0.867) TCGA-HU-A4GN-01 19 50549303 50549303 A T ZNF473 Missense_Mutation p.S535C 0.08 deleterious(0.01) possibly_damaging(0.7) TCGA-HU-A4GN-01 19 50720966 50720966 G A MYH14 Missense_Mutation p.R167H 0.10 deleterious(0) probably_damaging(1) TCGA-HU-A4GN-01 19 51169816 51169816 G A SHANK1 Missense_Mutation p.R1801C 0.29 unknown(0) TCGA-HU-A4GN-01 19 51274069 51274069 G A GPR32 Missense_Mutation p.R71H 0.17 tolerated(0.06) benign(0.262) TCGA-HU-A4GN-01 19 5144079 5144079 C T KDM4B Silent p.H884H 0.08 TCGA-HU-A4GN-01 19 51631276 51631278 CTT - SIGLEC9 In_Frame_Del p.F363del 0.23 TCGA-HU-A4GN-01 19 51918605 51918605 G - SIGLEC10 Frame_Shift_Del p.P387Qfs*4 0.15 TCGA-HU-A4GN-01 19 51961534 51961534 C T SIGLEC8 Silent p.T36T 0.19 TCGA-HU-A4GN-01 19 52003521 52003521 T G SIGLEC12 Missense_Mutation p.E154A 0.16 tolerated(0.15) possibly_damaging(0.593) TCGA-HU-A4GN-01 19 53344433 53344433 G A ZNF468 Missense_Mutation p.R372C 0.18 tolerated(0.11) benign(0.001) TCGA-HU-A4GN-01 19 53884897 53884897 C T ZNF525 Silent p.Y355Y 0.17 TCGA-HU-A4GN-01 19 53957990 53957990 C T ZNF761 RNA 0.19 TCGA-HU-A4GN-01 19 54481413 54481413 C T CACNG8 Silent p.G99G 0.11 TCGA-HU-A4GN-01 19 5456241 5456241 G T ZNRF4 Missense_Mutation p.G247C 0.09 tolerated(0.11) benign(0.213) TCGA-HU-A4GN-01 19 54653309 54653309 C T CNOT3 Missense_Mutation p.A474V 0.38 tolerated(0.41) benign(0) TCGA-HU-A4GN-01 19 54866760 54866761 - C LAIR1 3'UTR 0.23 TCGA-HU-A4GN-01 19 5595419 5595420 CT - SAFB2 Frame_Shift_Del p.E624Afs*32 0.23 TCGA-HU-A4GN-01 19 55995311 55995311 T C ZNF628 Silent p.G917G 0.33 TCGA-HU-A4GN-01 19 56370010 56370010 C T NLRP4 Silent p.D417D 0.15 TCGA-HU-A4GN-01 19 56614500 56614500 C T ZNF787 Intron 0.22 TCGA-HU-A4GN-01 19 57133306 57133306 C T ZNF71 Silent p.D217D 0.18 TCGA-HU-A4GN-01 19 5784080 5784080 G A CTB-54O9.9 3'UTR 0.24 TCGA-HU-A4GN-01 19 5832408 5832408 G - FUT6 Frame_Shift_Del p.A58Pfs*6 0.16 TCGA-HU-A4GN-01 19 58967762 58967762 C T ZNF324B Missense_Mutation p.T484M 0.23 deleterious(0.03) probably_damaging(0.969) TCGA-HU-A4GN-01 19 58982803 58982803 G A ZNF324 Missense_Mutation p.C315Y 0.20 deleterious(0) probably_damaging(1) TCGA-HU-A4GN-01 19 58983109 58983109 G A ZNF324 Missense_Mutation p.R417H 0.23 deleterious(0) probably_damaging(1) TCGA-HU-A4GN-01 19 629547 629547 G A POLRMT Missense_Mutation p.A272V 0.16 deleterious(0) probably_damaging(1) TCGA-HU-A4GN-01 19 6380339 6380339 C T GTF2F1 Missense_Mutation p.E503K 0.05 deleterious(0.01) probably_damaging(0.997) TCGA-HU-A4GN-01 19 6459631 6459631 C - SLC25A23 Frame_Shift_Del p.S4Afs*128 0.13 TCGA-HU-A4GN-01 19 7117055 7117055 C T INSR 3'UTR 0.22 TCGA-HU-A4GN-01 19 7987602 7987602 C A SNAPC2 Missense_Mutation p.L320M 0.05 tolerated(0.06) probably_damaging(0.991) TCGA-HU-A4GN-01 19 8367418 8367418 G A CD320 Missense_Mutation p.R260C 0.24 tolerated(0.18) benign(0.003) TCGA-HU-A4GN-01 19 8808575 8808575 G A ACTL9 Silent p.R159R 0.21 TCGA-HU-A4GN-01 19 8999422 8999422 T C MUC16 Missense_Mutation p.T13585A 0.12 possibly_damaging(0.839) TCGA-HU-A4GN-01 19 9049103 9049103 A - MUC16 Frame_Shift_Del p.F10843Sfs*11 0.16 TCGA-HU-A4GN-01 19 9062137 9062137 G A MUC16 Missense_Mutation p.L8437F 0.06 unknown(0) TCGA-HU-A4GN-01 19 9272235 9272235 A G ZNF317 3'UTR 0.15 TCGA-HU-A4GN-01 19 966745 966745 C A ARID3A Missense_Mutation p.P458T 0.14 deleterious(0) probably_damaging(1) TCGA-HU-A4GN-01 19 9763880 9763880 T C ZNF562 Silent p.K342K 0.25 TCGA-HU-A4GN-01 1 10386200 10386200 C T KIF1B Missense_Mutation p.R857C 0.19 deleterious(0.04) possibly_damaging(0.721) TCGA-HU-A4GN-01 1 10479510 10479510 G A PGD Missense_Mutation p.A416T 0.18 tolerated(0.38) benign(0.004) TCGA-HU-A4GN-01 1 109270660 109270660 T C FNDC7 Missense_Mutation p.S448P 0.05 tolerated(0.07) probably_damaging(0.987) TCGA-HU-A4GN-01 1 109793887 109793888 - C CELSR2 Frame_Shift_Ins p.Q398Pfs*3 0.16 TCGA-HU-A4GN-01 1 109794458 109794458 G A CELSR2 Missense_Mutation p.G586D 0.08 deleterious(0) probably_damaging(1) TCGA-HU-A4GN-01 1 110155418 110155418 C A GNAT2 Missense_Mutation p.E25D 0.18 tolerated(0.07) benign(0.126) TCGA-HU-A4GN-01 1 110293322 110293322 C T EPS8L3 Missense_Mutation p.R578Q 0.21 tolerated(0.09) possibly_damaging(0.668) TCGA-HU-A4GN-01 1 110300972 110300972 C T EPS8L3 Missense_Mutation p.R229Q 0.13 tolerated(0.14) benign(0.049) TCGA-HU-A4GN-01 1 110765712 110765712 G A KCNC4 Missense_Mutation p.V269M 0.09 tolerated(0.12) benign(0.021) TCGA-HU-A4GN-01 1 110946654 110946654 G A LAMTOR5 Silent p.R116R 0.10 TCGA-HU-A4GN-01 1 111216557 111216557 G C KCNA3 Missense_Mutation p.S292C 0.06 deleterious(0.01) possibly_damaging(0.593) TCGA-HU-A4GN-01 1 1120454 1120454 G A TTLL10 Missense_Mutation p.G456S 0.25 deleterious(0.03) probably_damaging(0.971) TCGA-HU-A4GN-01 1 11333902 11333902 A G UBIAD1 Missense_Mutation p.Y105C 0.16 deleterious(0) possibly_damaging(0.874) TCGA-HU-A4GN-01 1 113615988 113615988 G A LRIG2 5'UTR 0.19 TCGA-HU-A4GN-01 1 114947917 114947917 C A TRIM33 Intron 0.45 TCGA-HU-A4GN-01 1 115215728 115215729 - T AMPD1 3'UTR 0.32 TCGA-HU-A4GN-01 1 115229524 115229524 G A AMPD1 Missense_Mutation p.R108C 0.18 deleterious(0.03) possibly_damaging(0.762) TCGA-HU-A4GN-01 1 1152973 1152973 G A SDF4 Silent p.P336P 0.18 TCGA-HU-A4GN-01 1 117150810 117150810 C T IGSF3 Missense_Mutation p.A326T 0.21 deleterious(0.02) possibly_damaging(0.884) TCGA-HU-A4GN-01 1 11779718 11779718 G A DRAXIN Missense_Mutation p.A339T 0.09 deleterious(0.05) possibly_damaging(0.844) TCGA-HU-A4GN-01 1 120468084 120468084 C A NOTCH2 Missense_Mutation p.G1452V 0.08 deleterious(0) probably_damaging(1) TCGA-HU-A4GN-01 1 120906064 120906064 G A RP11-439A17.4 5'Flank 0.09 TCGA-HU-A4GN-01 1 12387745 12387745 G A VPS13D Silent p.A2677A 0.21 TCGA-HU-A4GN-01 1 1250257 1250257 G A CPSF3L Missense_Mutation p.R223W 0.08 deleterious(0) probably_damaging(1) TCGA-HU-A4GN-01 1 12835827 12835827 G A PRAMEF12 Silent p.Q143Q 0.07 TCGA-HU-A4GN-01 1 144915560 144915560 C T PDE4DIP Missense_Mutation p.R622Q 0.06 tolerated(0.36) benign(0.02) TCGA-HU-A4GN-01 1 145473439 145473439 G - ANKRD34A Frame_Shift_Del p.E39Rfs*4 0.08 TCGA-HU-A4GN-01 1 150463092 150463092 A G TARS2 Missense_Mutation p.S135G 0.16 deleterious(0.05) possibly_damaging(0.606) TCGA-HU-A4GN-01 1 150769275 150769275 T C CTSK Nonstop_Mutation p.*330Wext*19 0.08 TCGA-HU-A4GN-01 1 151011319 151011319 C T BNIPL Missense_Mutation p.R84C 0.06 deleterious(0) probably_damaging(0.983) TCGA-HU-A4GN-01 1 151378412 151378412 C T POGZ Silent p.E1033E 0.07 TCGA-HU-A4GN-01 1 151502489 151502489 G A CGN Silent p.R737R 0.08 TCGA-HU-A4GN-01 1 151509232 151509232 G A CGN Silent p.K1111K 0.17 TCGA-HU-A4GN-01 1 152280161 152280161 G A FLG Missense_Mutation p.R2401C 0.14 probably_damaging(0.982) TCGA-HU-A4GN-01 1 152280936 152280936 C T FLG Silent p.P2142P 0.11 TCGA-HU-A4GN-01 1 152648826 152648826 C T LCE2C 3'UTR 0.07 TCGA-HU-A4GN-01 1 152857143 152857143 C T SMCP Missense_Mutation p.P82L 0.18 tolerated(0.18) possibly_damaging(0.851) TCGA-HU-A4GN-01 1 153633753 153633753 C - SNAPIN Frame_Shift_Del p.P131Lfs*9 0.08 TCGA-HU-A4GN-01 1 155030118 155030118 C T ADAM15 Silent p.C443C 0.21 TCGA-HU-A4GN-01 1 155287769 155287769 A C FDPS Missense_Mutation p.D173A 0.20 deleterious(0) probably_damaging(0.991) TCGA-HU-A4GN-01 1 155931599 155931599 G A ARHGEF2 Missense_Mutation p.R441C 0.14 deleterious(0.01) probably_damaging(0.998) TCGA-HU-A4GN-01 1 156047381 156047381 G A MEX3A Missense_Mutation p.R183W 0.24 deleterious(0) probably_damaging(0.98) TCGA-HU-A4GN-01 1 156568099 156568099 G A GPATCH4 Missense_Mutation p.P61S 0.16 tolerated(0.06) possibly_damaging(0.907) TCGA-HU-A4GN-01 1 156642739 156642740 AG - NES Frame_Shift_Del p.L414Afs*17 0.17 TCGA-HU-A4GN-01 1 156819054 156819054 G A INSRR Silent p.N476N 0.14 TCGA-HU-A4GN-01 1 157648483 157648483 C T FCRL3 3'UTR 0.19 TCGA-HU-A4GN-01 1 15788097 15788097 C A CELA2A Silent p.T57T 0.05 TCGA-HU-A4GN-01 1 158389904 158389904 G T OR10K2 Missense_Mutation p.H251Q 0.20 deleterious(0) probably_damaging(1) TCGA-HU-A4GN-01 1 158517023 158517023 G T OR6Y1 Missense_Mutation p.N291K 0.22 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GN-01 1 158647587 158647587 C T SPTA1 Missense_Mutation p.E284K 0.21 tolerated(0.14) probably_damaging(0.999) TCGA-HU-A4GN-01 1 159021772 159021772 C T IFI16 Nonsense_Mutation p.R601* 0.08 TCGA-HU-A4GN-01 1 160011276 160011276 G A KCNJ10 Silent p.Y349Y 0.20 TCGA-HU-A4GN-01 1 161136994 161136994 G A PPOX Silent p.A64A 0.16 TCGA-HU-A4GN-01 1 161512708 161512708 T C FCGR3A 3'UTR 0.17 TCGA-HU-A4GN-01 1 162549390 162549390 C T UAP1 Missense_Mutation p.P220S 0.13 deleterious(0) possibly_damaging(0.533) TCGA-HU-A4GN-01 1 163131737 163131737 C T RGS5 Missense_Mutation p.R62H 0.18 tolerated(0.1) benign(0.175) TCGA-HU-A4GN-01 1 16459797 16459797 G A EPHA2 Missense_Mutation p.A644V 0.15 deleterious(0) probably_damaging(1) TCGA-HU-A4GN-01 1 16532039 16532039 C A ARHGEF19 Missense_Mutation p.L525F 0.12 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GN-01 1 165513722 165513722 C T LRRC52 Silent p.N63N 0.25 TCGA-HU-A4GN-01 1 165712524 165712524 C T TMCO1 Silent p.K167K 0.15 TCGA-HU-A4GN-01 1 171504671 171504671 G A PRRC2C Missense_Mutation p.A658T 0.09 unknown(0) TCGA-HU-A4GN-01 1 17322499 17322499 C - ATP13A2 Frame_Shift_Del p.G505Afs*19 0.17 TCGA-HU-A4GN-01 1 175046552 175046552 A G TNN 5'UTR 0.05 TCGA-HU-A4GN-01 1 178411822 178411822 C T RASAL2 Nonsense_Mutation p.R314* 0.12 TCGA-HU-A4GN-01 1 178412041 178412041 A - RASAL2 Frame_Shift_Del p.K389Rfs*7 0.24 TCGA-HU-A4GN-01 1 182026325 182026325 C G ZNF648 Missense_Mutation p.G274A 0.18 tolerated(0.05) benign(0.014) TCGA-HU-A4GN-01 1 184764655 184764657 TCT - FAM129A In_Frame_Del p.E749del 0.16 TCGA-HU-A4GN-01 1 185153998 185153998 A G SWT1 Missense_Mutation p.D455G 0.10 tolerated(0.07) probably_damaging(0.938) TCGA-HU-A4GN-01 1 18661448 18661448 G A IGSF21 Missense_Mutation p.R123H 0.08 deleterious(0) probably_damaging(0.966) TCGA-HU-A4GN-01 1 19426940 19426940 C A UBR4 Missense_Mutation p.R4384M 0.11 probably_damaging(0.99) TCGA-HU-A4GN-01 1 19472403 19472403 G A UBR4 Missense_Mutation p.P2610L 0.24 benign(0.001) TCGA-HU-A4GN-01 1 19482887 19482887 C A UBR4 Missense_Mutation p.G1984C 0.15 possibly_damaging(0.907) TCGA-HU-A4GN-01 1 1961598 1961598 G - GABRD Frame_Shift_Del p.G414Afs*95 0.10 TCGA-HU-A4GN-01 1 197898270 197898270 G A LHX9 Missense_Mutation p.A359T 0.21 tolerated(0.18) benign(0.003) TCGA-HU-A4GN-01 1 201687819 201687819 G A NAV1 Missense_Mutation p.G388S 0.05 deleterious(0.01) possibly_damaging(0.679) TCGA-HU-A4GN-01 1 205128707 205128707 G A DSTYK Missense_Mutation p.R736W 0.25 deleterious(0) probably_damaging(0.977) TCGA-HU-A4GN-01 1 212800058 212800058 C A FAM71A 3'UTR 0.07 TCGA-HU-A4GN-01 1 214794185 214794185 C A CENPF Missense_Mutation p.P254Q 0.20 probably_damaging(0.925) TCGA-HU-A4GN-01 1 215824087 215824087 G A USH2A Silent p.T4730T 0.21 TCGA-HU-A4GN-01 1 2160472 2160474 CTT - SKI In_Frame_Del p.F91del 0.16 TCGA-HU-A4GN-01 1 21938056 21938056 G A RAP1GAP Silent p.D308D 0.25 TCGA-HU-A4GN-01 1 220826691 220826691 G A MARK1 Missense_Mutation p.R662H 0.22 deleterious(0.01) probably_damaging(0.972) TCGA-HU-A4GN-01 1 221057717 221057717 G A HLX Missense_Mutation p.D380N 0.22 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GN-01 1 22160083 22160083 T C HSPG2 Missense_Mutation p.S3619G 0.16 possibly_damaging(0.758) TCGA-HU-A4GN-01 1 22205552 22205552 G A HSPG2 Silent p.D802D 0.12 TCGA-HU-A4GN-01 1 226829622 226829622 C A ITPKB Missense_Mutation p.K817N 0.07 deleterious(0) probably_damaging(0.993) TCGA-HU-A4GN-01 1 228285343 228285343 G A ARF1 Missense_Mutation p.R104H 0.17 deleterious_low_confidence(0.04) benign(0.006) TCGA-HU-A4GN-01 1 228412242 228412242 C T OBSCN Silent p.C1004C 0.10 TCGA-HU-A4GN-01 1 228433175 228433175 G T OBSCN Silent p.G1273G 0.13 TCGA-HU-A4GN-01 1 228559604 228559604 C - OBSCN Frame_Shift_Del p.Q8001Rfs*28 0.08 TCGA-HU-A4GN-01 1 235916502 235916502 T C LYST Missense_Mutation p.I2434M 0.19 deleterious(0.02) benign(0.026) TCGA-HU-A4GN-01 1 235920596 235920596 T C LYST Silent p.Q2348Q 0.19 TCGA-HU-A4GN-01 1 23779231 23779231 G - ASAP3 Frame_Shift_Del p.L128Wfs*4 0.08 TCGA-HU-A4GN-01 1 24078202 24078203 AA - TCEB3 Frame_Shift_Del p.K396Dfs*9 0.12 TCGA-HU-A4GN-01 1 242042157 242042157 G A EXO1 Missense_Mutation p.E541K 0.19 tolerated(0.41) benign(0.002) TCGA-HU-A4GN-01 1 244218334 244218334 A G ZBTB18 Missense_Mutation p.T420A 0.09 deleterious(0) possibly_damaging(0.876) TCGA-HU-A4GN-01 1 245849800 245849800 C T KIF26B Missense_Mutation p.T1172M 0.25 deleterious(0) unknown(0) TCGA-HU-A4GN-01 1 24669391 24669391 G A GRHL3 Missense_Mutation p.G432D 0.04 tolerated(0.52) benign(0.038) TCGA-HU-A4GN-01 1 246921560 246921560 A G SCCPDH Silent p.S199S 0.08 TCGA-HU-A4GN-01 1 248458616 248458616 C T OR2T12 Missense_Mutation p.A89T 0.10 tolerated(0.39) benign(0.009) TCGA-HU-A4GN-01 1 27088659 27088659 C - ARID1A Frame_Shift_Del p.Q758Rfs*75 0.16 TCGA-HU-A4GN-01 1 27097630 27097630 G A ARID1A Nonsense_Mutation p.W1073* 0.08 TCGA-HU-A4GN-01 1 27106078 27106078 C - ARID1A Frame_Shift_Del p.P1898Hfs*25 0.11 TCGA-HU-A4GN-01 1 27278443 27278443 G - C1orf172 Frame_Shift_Del p.S144Afs*104 0.18 TCGA-HU-A4GN-01 1 27673938 27673938 C A SYTL1 Missense_Mutation p.P73H 0.15 deleterious(0) possibly_damaging(0.757) TCGA-HU-A4GN-01 1 28148848 28148848 C A STX12 3'UTR 0.22 TCGA-HU-A4GN-01 1 32090630 32090630 G A HCRTR1 Missense_Mutation p.R333H 0.18 deleterious(0.03) probably_damaging(0.985) TCGA-HU-A4GN-01 1 33134427 33134427 G T RBBP4 Missense_Mutation p.G191V 0.12 deleterious(0) probably_damaging(0.989) TCGA-HU-A4GN-01 1 33237694 33237694 T C KIAA1522 Missense_Mutation p.F972L 0.17 deleterious(0) probably_damaging(0.997) TCGA-HU-A4GN-01 1 3407070 3407070 G A MEGF6 3'UTR 0.30 TCGA-HU-A4GN-01 1 35334674 35334674 G A DLGAP3 Missense_Mutation p.R673C 0.26 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GN-01 1 39797522 39797522 A T MACF1 Intron 0.24 TCGA-HU-A4GN-01 1 40131256 40131256 C T NT5C1A Missense_Mutation p.V124I 0.14 tolerated(0.31) possibly_damaging(0.905) TCGA-HU-A4GN-01 1 40236095 40236095 C T OXCT2 Missense_Mutation p.R278Q 0.15 tolerated(0.22) possibly_damaging(0.625) TCGA-HU-A4GN-01 1 41486228 41486228 C T SLFNL1 Silent p.T35T 0.16 TCGA-HU-A4GN-01 1 42049025 42049025 C T HIVEP3 Missense_Mutation p.D482N 0.07 probably_damaging(0.998) TCGA-HU-A4GN-01 1 43032075 43032075 C T CCDC30 Missense_Mutation p.L262F 0.15 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GN-01 1 43204116 43204116 C T CLDN19 Missense_Mutation p.G122R 0.09 deleterious(0.04) probably_damaging(1) TCGA-HU-A4GN-01 1 43774660 43774660 G A TIE1 Missense_Mutation p.R349Q 0.23 tolerated(0.26) benign(0.002) TCGA-HU-A4GN-01 1 43896975 43896975 A G SZT2 Silent p.P1595P 0.14 TCGA-HU-A4GN-01 1 43908165 43908165 G A SZT2 Missense_Mutation p.R2619Q 0.12 tolerated(0.08) benign(0.44) TCGA-HU-A4GN-01 1 44467245 44467245 G A SLC6A9 Silent p.F412F 0.23 TCGA-HU-A4GN-01 1 47078943 47078943 C T MOB3C Silent p.P69P 0.23 TCGA-HU-A4GN-01 1 47904538 47904538 G A FOXD2 Missense_Mutation p.R244H 0.30 deleterious_low_confidence(0.01) unknown(0) TCGA-HU-A4GN-01 1 49224924 49224924 C T BEND5 Silent p.A131A 0.25 TCGA-HU-A4GN-01 1 50884936 50884936 C T DMRTA2 Missense_Mutation p.V344M 0.12 deleterious(0) possibly_damaging(0.751) TCGA-HU-A4GN-01 1 50941230 50941230 G A FAF1 Missense_Mutation p.A592V 0.27 tolerated(0.09) possibly_damaging(0.497) TCGA-HU-A4GN-01 1 52260252 52260254 CTC - NRD1 In_Frame_Del p.E957del 0.08 TCGA-HU-A4GN-01 1 54060232 54060232 C - GLIS1 Frame_Shift_Del p.G115Afs*31 0.10 TCGA-HU-A4GN-01 1 62263064 62263066 TCA - INADL In_Frame_Del p.S457del 0.21 TCGA-HU-A4GN-01 1 6304432 6304432 A - HES3 Frame_Shift_Del p.K4Sfs*38 0.09 TCGA-HU-A4GN-01 1 66102159 66102159 G A LEPR Missense_Mutation p.A987T 0.27 deleterious(0.02) probably_damaging(1) TCGA-HU-A4GN-01 1 71512649 71512649 G A PTGER3 Silent p.P204P 0.10 TCGA-HU-A4GN-01 1 74834918 74834918 G A FPGT-TNNI3K Missense_Mutation p.R595Q 0.09 tolerated(0.3) benign(0.021) TCGA-HU-A4GN-01 1 75679471 75679471 C A SLC44A5 Silent p.L627L 0.24 TCGA-HU-A4GN-01 1 8390339 8390339 G - SLC45A1 Frame_Shift_Del p.G264Dfs*14 0.09 TCGA-HU-A4GN-01 1 90049769 90049769 T C LRRC8B Silent p.C520C 0.21 TCGA-HU-A4GN-01 1 90478763 90478763 A - ZNF326 Frame_Shift_Del p.N300Tfs*41 0.10 TCGA-HU-A4GN-01 1 9107765 9107766 AT - SLC2A5 Frame_Shift_Del p.S109Yfs*17 0.19 TCGA-HU-A4GN-01 1 94528700 94528700 G A ABCA4 Silent p.D576D 0.24 TCGA-HU-A4GN-01 1 94639400 94639400 A - ARHGAP29 3'UTR 0.14 TCGA-HU-A4GN-01 1 95710260 95710260 A - RWDD3 Intron 0.16 TCGA-HU-A4GN-01 1 9781280 9781280 C T PIK3CD Silent p.F595F 0.21 TCGA-HU-A4GN-01 1 9791937 9791937 C A CLSTN1 Silent p.T815T 0.27 TCGA-HU-A4GN-01 20 13763492 13763492 T - ESF1 Frame_Shift_Del p.T99Pfs*12 0.31 TCGA-HU-A4GN-01 20 14307986 14307986 A G FLRT3 Missense_Mutation p.I56T 0.18 deleterious(0) possibly_damaging(0.71) TCGA-HU-A4GN-01 20 17602500 17602500 C A RRBP1 Missense_Mutation p.Q647H 0.05 deleterious(0.01) benign(0.387) TCGA-HU-A4GN-01 20 18005430 18005430 C A OVOL2 Missense_Mutation p.Q226H 0.11 deleterious(0.05) probably_damaging(0.99) TCGA-HU-A4GN-01 20 20453516 20453516 C T RALGAPA2 Missense_Mutation p.A1818T 0.10 deleterious(0) probably_damaging(1) TCGA-HU-A4GN-01 20 23016874 23016874 C T SSTR4 Missense_Mutation p.R252C 0.16 tolerated(0.06) benign(0.168) TCGA-HU-A4GN-01 20 2315907 2315907 C A TGM3 Silent p.T596T 0.11 TCGA-HU-A4GN-01 20 2384451 2384451 C A TGM6 Missense_Mutation p.L440I 0.06 tolerated(0.13) benign(0.097) TCGA-HU-A4GN-01 20 25261746 25261746 G T PYGB Silent p.S467S 0.20 TCGA-HU-A4GN-01 20 25277133 25277133 C T PYGB Missense_Mutation p.P836L 0.36 deleterious(0.02) benign(0.004) TCGA-HU-A4GN-01 20 25434182 25434182 G A NINL Nonsense_Mutation p.R1352* 0.09 TCGA-HU-A4GN-01 20 2577930 2577930 A G TMC2 Missense_Mutation p.T404A 0.22 tolerated(0.07) possibly_damaging(0.885) TCGA-HU-A4GN-01 20 31040126 31040126 C T C20orf112 Missense_Mutation p.G335S 0.13 tolerated(0.28) benign(0.001) TCGA-HU-A4GN-01 20 32883312 32883312 C T AHCY Silent p.R36R 0.11 TCGA-HU-A4GN-01 20 33122488 33122488 A G DYNLRB1 Missense_Mutation p.M46V 0.16 tolerated(0.2) benign(0.003) TCGA-HU-A4GN-01 20 3321211 3321212 - A C20orf194 Frame_Shift_Ins p.S309Ffs*2 0.15 TCGA-HU-A4GN-01 20 33364108 33364108 C T NCOA6 Missense_Mutation p.V127I 0.22 benign(0.023) TCGA-HU-A4GN-01 20 35696449 35696449 A - RBL1 Frame_Shift_Del p.L144* 0.16 TCGA-HU-A4GN-01 20 36640099 36640099 C T TTI1 Missense_Mutation p.R707H 0.11 deleterious(0.04) benign(0.316) TCGA-HU-A4GN-01 20 42162927 42162927 C - L3MBTL1 Frame_Shift_Del p.P514Lfs*8 0.16 TCGA-HU-A4GN-01 20 43248393 43248393 G T ADA 3'UTR 0.21 TCGA-HU-A4GN-01 20 44594330 44594330 G A ZNF335 Missense_Mutation p.P347S 0.20 deleterious(0.01) benign(0.26) TCGA-HU-A4GN-01 20 44639874 44639874 G A MMP9 Missense_Mutation p.G248S 0.15 deleterious(0.02) probably_damaging(0.994) TCGA-HU-A4GN-01 20 44642136 44642136 G A MMP9 Missense_Mutation p.A525T 0.18 tolerated(0.77) benign(0.03) TCGA-HU-A4GN-01 20 45725724 45725724 C T EYA2 Missense_Mutation p.R269C 0.06 deleterious(0) probably_damaging(1) TCGA-HU-A4GN-01 20 45853116 45853116 T C ZMYND8 Missense_Mutation p.Q991R 0.17 tolerated(0.21) probably_damaging(0.995) TCGA-HU-A4GN-01 20 48504378 48504378 G A SLC9A8 Missense_Mutation p.G567R 0.28 tolerated(0.05) probably_damaging(0.934) TCGA-HU-A4GN-01 20 50051813 50051813 C A NFATC2 Missense_Mutation p.K648N 0.05 deleterious(0.02) probably_damaging(0.916) TCGA-HU-A4GN-01 20 50090640 50090640 G A NFATC2 Missense_Mutation p.R529W 0.18 deleterious(0) probably_damaging(1) TCGA-HU-A4GN-01 20 50287727 50287727 G A ATP9A Silent p.P369P 0.16 TCGA-HU-A4GN-01 20 52612451 52612451 T C BCAS1 Missense_Mutation p.M288V 0.23 deleterious(0) probably_damaging(0.996) TCGA-HU-A4GN-01 20 55048423 55048423 C T RTFDC1 Nonsense_Mutation p.R46* 0.12 TCGA-HU-A4GN-01 20 57415433 57415433 C T RP4-806M20.3 5'Flank 0.23 TCGA-HU-A4GN-01 20 57566041 57566041 G A NELFCD Missense_Mutation p.A307T 0.12 tolerated(0.26) benign(0.366) TCGA-HU-A4GN-01 20 58457217 58457217 T C SYCP2 Missense_Mutation p.K845E 0.14 tolerated(0.22) possibly_damaging(0.621) TCGA-HU-A4GN-01 20 6021714 6021714 T - LRRN4 Frame_Shift_Del p.N726Tfs*46 0.13 TCGA-HU-A4GN-01 20 60485530 60485530 C T CDH4 Missense_Mutation p.T414M 0.10 deleterious(0) possibly_damaging(0.882) TCGA-HU-A4GN-01 20 60581702 60581702 A G TAF4 Missense_Mutation p.V696A 0.17 probably_damaging(0.93) TCGA-HU-A4GN-01 20 60704864 60704864 G A LSM14B Missense_Mutation p.V151I 0.33 tolerated(0.24) benign(0.008) TCGA-HU-A4GN-01 20 62493610 62493610 G A ABHD16B Silent p.A239A 0.08 TCGA-HU-A4GN-01 20 62707974 62707974 C T RGS19 Missense_Mutation p.R19Q 0.06 tolerated_low_confidence(0.87) benign(0) TCGA-HU-A4GN-01 20 62724254 62724254 G A OPRL1 Missense_Mutation p.V61M 0.12 deleterious(0) probably_damaging(0.973) TCGA-HU-A4GN-01 20 7980488 7980488 G A TMX4 Missense_Mutation p.R120C 0.08 deleterious(0) probably_damaging(0.977) TCGA-HU-A4GN-01 21 27423391 27423391 A G APP Missense_Mutation p.V196A 0.20 tolerated(0.91) unknown(0) TCGA-HU-A4GN-01 21 33949050 33949050 A C TCP10L 3'UTR 0.19 TCGA-HU-A4GN-01 21 34958406 34958406 G A DONSON Nonsense_Mutation p.R162* 0.15 TCGA-HU-A4GN-01 21 35195929 35195929 C T ITSN1 Missense_Mutation p.S1052F 0.29 deleterious(0) probably_damaging(0.994) TCGA-HU-A4GN-01 21 37417922 37417922 G A SETD4 Silent p.L228L 0.16 TCGA-HU-A4GN-01 21 39087018 39087018 C G KCNJ6 Missense_Mutation p.E148Q 0.23 deleterious(0) probably_damaging(1) TCGA-HU-A4GN-01 21 39671474 39671474 C T KCNJ15 Silent p.P97P 0.17 TCGA-HU-A4GN-01 21 40627652 40627652 C T BRWD1 Missense_Mutation p.R725H 0.06 deleterious(0.03) probably_damaging(0.984) TCGA-HU-A4GN-01 21 45993604 45993604 C A TSPEAR Intron 0.09 TCGA-HU-A4GN-01 21 46012372 46012372 G T KRTAP10-6 5'UTR 0.17 TCGA-HU-A4GN-01 21 47663516 47663516 C A MCM3AP Missense_Mutation p.R1720M 0.07 deleterious(0) possibly_damaging(0.707) TCGA-HU-A4GN-01 22 17578808 17578808 C T IL17RA Silent p.H95H 0.16 TCGA-HU-A4GN-01 22 19707904 19707904 G A SEPT5 Missense_Mutation p.G142S 0.07 tolerated(0.05) probably_damaging(1) TCGA-HU-A4GN-01 22 20796677 20796677 G A KLHL22 Missense_Mutation p.L530F 0.06 deleterious(0.01) probably_damaging(0.997) TCGA-HU-A4GN-01 22 20939157 20939157 C - MED15 Frame_Shift_Del p.P608Rfs*39 0.13 TCGA-HU-A4GN-01 22 21742908 21742908 G - RIMBP3B Frame_Shift_Del p.G1589Afs*9 0.12 TCGA-HU-A4GN-01 22 22712499 22712499 G A IGLV1-47 Missense_Mutation p.R81Q 0.28 deleterious_low_confidence(0) possibly_damaging(0.754) TCGA-HU-A4GN-01 22 22893468 22893468 C T PRAME Missense_Mutation p.S22N 0.18 tolerated(0.29) benign(0.083) TCGA-HU-A4GN-01 22 23596021 23596021 G A BCR Missense_Mutation p.A439T 0.07 tolerated_low_confidence(0.11) benign(0.011) TCGA-HU-A4GN-01 22 24810529 24810529 C T SPECC1L Nonsense_Mutation p.R1098* 0.10 TCGA-HU-A4GN-01 22 26895170 26895170 T G TFIP11 Missense_Mutation p.K410T 0.21 tolerated(0.11) possibly_damaging(0.505) TCGA-HU-A4GN-01 22 30188437 30188437 G A ASCC2 Silent p.D669D 0.18 TCGA-HU-A4GN-01 22 31322775 31322776 CT - MORC2 3'UTR 0.21 TCGA-HU-A4GN-01 22 31333609 31333609 G A MORC2 Missense_Mutation p.R425C 0.19 deleterious(0.02) benign(0.127) TCGA-HU-A4GN-01 22 31658139 31658139 A G LIMK2 Missense_Mutation p.S170G 0.10 deleterious(0.03) possibly_damaging(0.473) TCGA-HU-A4GN-01 22 36054849 36054849 G A APOL6 Missense_Mutation p.V80M 0.13 deleterious(0.03) possibly_damaging(0.85) TCGA-HU-A4GN-01 22 36122584 36122584 G A APOL5 Missense_Mutation p.A157T 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-HU-A4GN-01 22 36897391 36897391 G A FOXRED2 Silent p.Y371Y 0.13 TCGA-HU-A4GN-01 22 36902129 36902129 T C FOXRED2 Missense_Mutation p.Y114C 0.08 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GN-01 22 37699442 37699442 G A CYTH4 Missense_Mutation p.R232Q 0.28 tolerated(0.25) benign(0.014) TCGA-HU-A4GN-01 22 38120705 38120705 C A TRIOBP Silent p.T714T 0.16 TCGA-HU-A4GN-01 22 38121668 38121668 C T TRIOBP Silent p.H1035H 0.14 TCGA-HU-A4GN-01 22 38824062 38824062 C T KCNJ4 Missense_Mutation p.G26S 0.21 deleterious(0.03) probably_damaging(0.999) TCGA-HU-A4GN-01 22 39146312 39146312 C A SUN2 Silent p.V167V 0.09 TCGA-HU-A4GN-01 22 39813774 39813774 C T TAB1 Missense_Mutation p.T157M 0.21 tolerated(0.07) possibly_damaging(0.73) TCGA-HU-A4GN-01 22 40711509 40711509 C T TNRC6B Missense_Mutation p.S1634L 0.27 deleterious(0) possibly_damaging(0.793) TCGA-HU-A4GN-01 22 41527551 41527551 C T EP300 Missense_Mutation p.P481L 0.08 unknown(0) TCGA-HU-A4GN-01 22 42289201 42289201 C - SREBF2 Frame_Shift_Del p.L765Wfs*13 0.21 TCGA-HU-A4GN-01 22 42981828 42981828 G A POLDIP3 Missense_Mutation p.T412M 0.19 deleterious(0.03) benign(0.014) TCGA-HU-A4GN-01 22 43529199 43529199 C - MCAT Frame_Shift_Del p.F342Sfs*7 0.19 TCGA-HU-A4GN-01 22 44323001 44323001 A - PNPLA3 Frame_Shift_Del p.N126Tfs*44 0.15 TCGA-HU-A4GN-01 22 45128176 45128176 A G PRR5 Missense_Mutation p.N177D 0.06 tolerated(0.64) benign(0.039) TCGA-HU-A4GN-01 22 46096163 46096163 T C ATXN10 Silent p.A131A 0.16 TCGA-HU-A4GN-01 22 50217190 50217190 C T BRD1 Missense_Mutation p.R259H 0.24 deleterious(0) probably_damaging(1) TCGA-HU-A4GN-01 22 50900529 50900529 C T SBF1 Missense_Mutation p.E806K 0.28 deleterious(0.03) benign(0.325) TCGA-HU-A4GN-01 22 51160646 51160646 G A SHANK3 Missense_Mutation p.R1478H 0.21 possibly_damaging(0.902) TCGA-HU-A4GN-01 22 51208372 51208372 G A RABL2B Missense_Mutation p.P124S 0.26 tolerated(0.1) benign(0.237) TCGA-HU-A4GN-01 2 105473365 105473365 C T POU3F3 Missense_Mutation p.P466L 0.16 tolerated(0.06) probably_damaging(0.985) TCGA-HU-A4GN-01 2 107459638 107459638 C T ST6GAL2 Missense_Mutation p.G266S 0.38 probably_damaging(0.998) TCGA-HU-A4GN-01 2 10912017 10912017 G A ATP6V1C2 Missense_Mutation p.V175M 0.22 deleterious(0) probably_damaging(0.997) TCGA-HU-A4GN-01 2 109352109 109352109 G A RANBP2 Missense_Mutation p.R176H 0.22 deleterious(0.03) benign(0.003) TCGA-HU-A4GN-01 2 109371681 109371681 T G RANBP2 Missense_Mutation p.L811R 0.06 deleterious(0) benign(0.026) TCGA-HU-A4GN-01 2 114340578 114340578 T - MIR1302-3 RNA 0.18 TCGA-HU-A4GN-01 2 11590210 11590210 G A E2F6 Silent p.A193A 0.17 TCGA-HU-A4GN-01 2 11798844 11798844 G A NTSR2 Silent p.L332L 0.17 TCGA-HU-A4GN-01 2 121728104 121728104 G A GLI2 Silent p.Q327Q 0.26 TCGA-HU-A4GN-01 2 125261894 125261894 A T CNTNAP5 Missense_Mutation p.E362V 0.12 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GN-01 2 125504945 125504945 C T CNTNAP5 Silent p.D738D 0.12 TCGA-HU-A4GN-01 2 128030517 128030517 G A ERCC3 Missense_Mutation p.T584M 0.07 deleterious(0) probably_damaging(1) TCGA-HU-A4GN-01 2 128184716 128184716 C T PROC Silent p.C238C 0.05 TCGA-HU-A4GN-01 2 131890540 131890540 G A PLEKHB2 Silent p.T133T 0.29 TCGA-HU-A4GN-01 2 132257915 132257915 A G AC093838.4 RNA 0.20 TCGA-HU-A4GN-01 2 135988440 135988440 T - ZRANB3 Frame_Shift_Del p.R533Dfs*3 0.13 TCGA-HU-A4GN-01 2 141143560 141143560 G T LRP1B Missense_Mutation p.P3478H 0.19 probably_damaging(0.971) TCGA-HU-A4GN-01 2 141598627 141598627 C T LRP1B Nonsense_Mutation p.W1658* 0.09 TCGA-HU-A4GN-01 2 148683686 148683686 A - ACVR2A Frame_Shift_Del p.K437Rfs*5 0.24 TCGA-HU-A4GN-01 2 148712917 148712917 T - ORC4 Frame_Shift_Del p.G146Vfs*9 0.24 TCGA-HU-A4GN-01 2 152220529 152220529 C T TNFAIP6 Missense_Mutation p.A56V 0.10 tolerated(0.14) possibly_damaging(0.574) TCGA-HU-A4GN-01 2 152342437 152342437 C T NEB Missense_Mutation p.R8472H 0.24 probably_damaging(0.924) TCGA-HU-A4GN-01 2 155566239 155566239 C T KCNJ3 Missense_Mutation p.A276V 0.17 tolerated(0.13) benign(0.042) TCGA-HU-A4GN-01 2 157407179 157407179 C T GPD2 Missense_Mutation p.R298C 0.27 deleterious(0) benign(0.24) TCGA-HU-A4GN-01 2 158272437 158272437 T C CYTIP Missense_Mutation p.T278A 0.20 tolerated(0.31) possibly_damaging(0.538) TCGA-HU-A4GN-01 2 159523059 159523059 C T PKP4 Silent p.R904R 0.06 TCGA-HU-A4GN-01 2 159530257 159530257 G A PKP4 Missense_Mutation p.R998Q 0.18 deleterious(0.03) benign(0.423) TCGA-HU-A4GN-01 2 166894493 166894493 A G SCN1A Silent p.G913G 0.21 TCGA-HU-A4GN-01 2 169989169 169989169 T A LRP2 Missense_Mutation p.D4548V 0.23 benign(0.002) TCGA-HU-A4GN-01 2 170101377 170101377 A G LRP2 Missense_Mutation p.C1086R 0.26 probably_damaging(1) TCGA-HU-A4GN-01 2 172300086 172300086 A - DCAF17 Frame_Shift_Del p.I97* 0.13 TCGA-HU-A4GN-01 2 173850209 173850209 G A RAPGEF4 Missense_Mutation p.G380R 0.17 deleterious(0.02) possibly_damaging(0.529) TCGA-HU-A4GN-01 2 173885388 173885388 C T RAPGEF4 Missense_Mutation p.T733M 0.16 tolerated(0.19) probably_damaging(0.97) TCGA-HU-A4GN-01 2 175436391 175436391 C T WIPF1 Intron 0.07 TCGA-HU-A4GN-01 2 178483202 178483202 C T TTC30A Silent p.P76P 0.16 TCGA-HU-A4GN-01 2 179309177 179309177 T C PRKRA Missense_Mutation p.N123S 0.09 tolerated(0.65) benign(0.001) TCGA-HU-A4GN-01 2 179395781 179395781 C A TTN Missense_Mutation p.E35187D 0.22 TCGA-HU-A4GN-01 2 179402474 179402474 G A TTN Missense_Mutation p.R33154C 0.08 TCGA-HU-A4GN-01 2 179424199 179424199 G A TTN Missense_Mutation p.A28887V 0.25 TCGA-HU-A4GN-01 2 179605033 179605033 A G TTN Silent p.N4309N 0.18 TCGA-HU-A4GN-01 2 179621192 179621192 C A TTN Missense_Mutation p.V3671L 0.16 TCGA-HU-A4GN-01 2 179640696 179640696 A G TTN Silent p.D1965D 0.07 TCGA-HU-A4GN-01 2 187605100 187605100 C A FAM171B Silent p.P128P 0.12 TCGA-HU-A4GN-01 2 191524446 191524446 G A NAB1 Missense_Mutation p.A182T 0.19 tolerated(0.29) benign(0.013) TCGA-HU-A4GN-01 2 192288691 192288691 C T MYO1B 3'UTR 0.24 TCGA-HU-A4GN-01 2 198948749 198948749 A - PLCL1 Frame_Shift_Del p.N171Tfs*33 0.08 TCGA-HU-A4GN-01 2 201354988 201354988 T A KCTD18 Silent p.T372T 0.15 TCGA-HU-A4GN-01 2 202323572 202323572 T C STRADB Silent p.S26S 0.20 TCGA-HU-A4GN-01 2 203807539 203807539 G A CARF Missense_Mutation p.R52H 0.09 tolerated_low_confidence(0.55) benign(0.001) TCGA-HU-A4GN-01 2 207009720 207009720 C T NDUFS1 Silent p.A270A 0.18 TCGA-HU-A4GN-01 2 209010499 209010499 G - CRYGB Frame_Shift_Del p.P84Rfs*8 0.21 TCGA-HU-A4GN-01 2 21232913 21232913 A G APOB Missense_Mutation p.I2276T 0.20 benign(0.001) TCGA-HU-A4GN-01 2 214160816 214160816 T C SPAG16 Silent p.D55D 0.25 TCGA-HU-A4GN-01 2 215843156 215843156 T - ABCA12 Frame_Shift_Del p.N1671Ifs*4 0.21 TCGA-HU-A4GN-01 2 215876269 215876269 C T ABCA12 Missense_Mutation p.M742I 0.18 tolerated(0.1) benign(0.016) TCGA-HU-A4GN-01 2 216191614 216191614 G A ATIC Missense_Mutation p.V201I 0.25 tolerated(0.34) benign(0.001) TCGA-HU-A4GN-01 2 218700748 218700748 C T TNS1 Missense_Mutation p.R940Q 0.15 deleterious(0.04) probably_damaging(0.997) TCGA-HU-A4GN-01 2 219410943 219410943 C T USP37 Splice_Site p.X227_splice 0.11 TCGA-HU-A4GN-01 2 220115630 220115630 C T TUBA4A Missense_Mutation p.R264H 0.12 tolerated_low_confidence(0.05) benign(0.073) TCGA-HU-A4GN-01 2 220354421 220354421 T G SPEG Missense_Mutation p.V2894G 0.16 benign(0) TCGA-HU-A4GN-01 2 220413898 220413898 G A TMEM198 Missense_Mutation p.R256H 0.25 tolerated(0.18) possibly_damaging(0.522) TCGA-HU-A4GN-01 2 220416424 220416424 C - OBSL1 Frame_Shift_Del p.G1837Afs*57 0.18 TCGA-HU-A4GN-01 2 220421178 220421178 C T OBSL1 Missense_Mutation p.R1445Q 0.17 tolerated(0.26) benign(0.131) TCGA-HU-A4GN-01 2 222433479 222433479 G A EPHA4 Nonsense_Mutation p.Q40* 0.18 TCGA-HU-A4GN-01 2 227660213 227660213 C T IRS1 Missense_Mutation p.R1081H 0.10 tolerated(0.15) benign(0.001) TCGA-HU-A4GN-01 2 227662740 227662740 G A IRS1 Nonsense_Mutation p.Q239* 0.21 TCGA-HU-A4GN-01 2 227663331 227663331 C T IRS1 Missense_Mutation p.A42T 0.17 deleterious(0) possibly_damaging(0.542) TCGA-HU-A4GN-01 2 228883949 228883949 G A SPHKAP Missense_Mutation p.P541S 0.23 tolerated(1) benign(0.001) TCGA-HU-A4GN-01 2 230911163 230911163 G A SLC16A14 Missense_Mutation p.R227C 0.07 tolerated(0.07) benign(0.002) TCGA-HU-A4GN-01 2 232079591 232079591 C T ARMC9 Silent p.F75F 0.11 TCGA-HU-A4GN-01 2 233410403 233410403 C A CHRNG Missense_Mutation p.P511T 0.13 tolerated(0.52) benign(0.001) TCGA-HU-A4GN-01 2 234526809 234526809 C A UGT1A8 Silent p.A152A 0.04 TCGA-HU-A4GN-01 2 234750011 234750011 G A HJURP Missense_Mutation p.A472V 0.05 tolerated(0.44) benign(0) TCGA-HU-A4GN-01 2 238280583 238280583 G C COL6A3 Silent p.L1359L 0.21 TCGA-HU-A4GN-01 2 240002823 240002823 G - HDAC4 Frame_Shift_Del p.M902Wfs*55 0.24 TCGA-HU-A4GN-01 2 240969565 240969565 G A OR6B2 Silent p.F94F 0.08 TCGA-HU-A4GN-01 2 240969841 240969841 A G OR6B2 Silent p.S2S 0.25 TCGA-HU-A4GN-01 2 241418932 241418932 C T ANKMY1 3'UTR 0.19 TCGA-HU-A4GN-01 2 241420369 241420369 C - ANKMY1 Frame_Shift_Del p.D922Tfs*6 0.09 TCGA-HU-A4GN-01 2 241706349 241706349 G T KIF1A Missense_Mutation p.S556Y 0.15 deleterious(0.03) benign(0.269) TCGA-HU-A4GN-01 2 241835121 241835121 C A C2orf54 Missense_Mutation p.E98D 0.06 tolerated(0.46) benign(0.005) TCGA-HU-A4GN-01 2 242154253 242154253 C T ANO7 Nonsense_Mutation p.Q642* 0.08 TCGA-HU-A4GN-01 2 242176046 242176046 G A HDLBP Missense_Mutation p.A963V 0.23 deleterious(0) probably_damaging(0.989) TCGA-HU-A4GN-01 2 242179429 242179429 G A HDLBP Missense_Mutation p.R760C 0.09 deleterious(0) possibly_damaging(0.711) TCGA-HU-A4GN-01 2 25141477 25141477 T - ADCY3 Frame_Shift_Del p.K127Rfs*21 0.19 TCGA-HU-A4GN-01 2 25966041 25966041 G A ASXL2 Silent p.H1055H 0.09 TCGA-HU-A4GN-01 2 25966749 25966749 G A ASXL2 Silent p.S819S 0.05 TCGA-HU-A4GN-01 2 27357254 27357254 A G PREB Silent p.A12A 0.12 TCGA-HU-A4GN-01 2 27430357 27430357 A G SLC5A6 Silent p.H54H 0.17 TCGA-HU-A4GN-01 2 277054 277054 A - ACP1 Frame_Shift_Del p.K124Nfs*61 0.12 TCGA-HU-A4GN-01 2 28841220 28841220 G A PLB1 Missense_Mutation p.R1090Q 0.32 tolerated(0.34) benign(0.005) TCGA-HU-A4GN-01 2 29917828 29917828 C T ALK Silent p.L280L 0.16 TCGA-HU-A4GN-01 2 31360981 31360981 C T GALNT14 5'UTR 0.14 TCGA-HU-A4GN-01 2 31805915 31805915 C T SRD5A2 RNA 0.24 TCGA-HU-A4GN-01 2 32693612 32693612 C T BIRC6 Missense_Mutation p.A1963V 0.20 benign(0.002) TCGA-HU-A4GN-01 2 33809836 33809836 G A FAM98A 3'UTR 0.27 TCGA-HU-A4GN-01 2 37458564 37458564 T C CEBPZ Silent p.G49G 0.24 TCGA-HU-A4GN-01 2 38178539 38178539 A G RMDN2 Missense_Mutation p.S61G 0.23 deleterious_low_confidence(0.01) probably_damaging(0.953) TCGA-HU-A4GN-01 2 44531467 44531467 C A SLC3A1 Missense_Mutation p.P441H 0.10 deleterious(0) probably_damaging(0.997) TCGA-HU-A4GN-01 2 46808671 46808671 A G PIGF Silent p.I202I 0.11 TCGA-HU-A4GN-01 2 47177502 47177502 A T TTC7A Missense_Mutation p.D62V 0.08 deleterious(0.02) benign(0.027) TCGA-HU-A4GN-01 2 48725735 48725735 G A PPP1R21 Missense_Mutation p.R599Q 0.08 deleterious(0.03) benign(0.426) TCGA-HU-A4GN-01 2 48915561 48915561 C T LHCGR Missense_Mutation p.V459I 0.08 deleterious(0.04) possibly_damaging(0.85) TCGA-HU-A4GN-01 2 50573840 50573840 C T NRXN1 Intron 0.20 TCGA-HU-A4GN-01 2 61439037 61439037 G A USP34 Nonsense_Mutation p.Q2904* 0.08 TCGA-HU-A4GN-01 2 65298937 65298937 C A CEP68 Missense_Mutation p.P236H 0.20 deleterious(0.03) possibly_damaging(0.788) TCGA-HU-A4GN-01 2 69420482 69420482 T C ANTXR1 Silent p.L457L 0.05 TCGA-HU-A4GN-01 2 69623338 69623338 A G NFU1 3'UTR 0.11 TCGA-HU-A4GN-01 2 71218969 71218969 G A TEX261 Silent p.L99L 0.29 TCGA-HU-A4GN-01 2 74274174 74274174 C - TET3 Frame_Shift_Del p.Q244Rfs*162 0.24 TCGA-HU-A4GN-01 2 74474271 74474271 C T SLC4A5 Missense_Mutation p.D651N 0.15 deleterious(0) probably_damaging(1) TCGA-HU-A4GN-01 2 74867329 74867329 A T M1AP Missense_Mutation p.L25H 0.13 deleterious(0) probably_damaging(1) TCGA-HU-A4GN-01 2 86267634 86267634 C T POLR1A Silent p.P1207P 0.28 TCGA-HU-A4GN-01 2 88485550 88485550 C T THNSL2 Missense_Mutation p.R455W 0.25 deleterious(0) possibly_damaging(0.696) TCGA-HU-A4GN-01 2 95944487 95944487 G A PROM2 Missense_Mutation p.A357T 0.06 tolerated(0.42) benign(0.042) TCGA-HU-A4GN-01 2 96948969 96948969 G A SNRNP200 Nonsense_Mutation p.R1629* 0.13 TCGA-HU-A4GN-01 2 9985364 9985364 C T TAF1B Missense_Mutation p.R12C 0.23 deleterious(0.03) probably_damaging(0.956) TCGA-HU-A4GN-01 3 101504476 101504476 C T NXPE3 Silent p.C12C 0.07 TCGA-HU-A4GN-01 3 108295157 108295157 T C KIAA1524 Silent p.L285L 0.17 TCGA-HU-A4GN-01 3 112357212 112357212 C T CCDC80 Missense_Mutation p.R514Q 0.24 tolerated(0.39) benign(0.003) TCGA-HU-A4GN-01 3 113376015 113376015 T C KIAA2018 Missense_Mutation p.Q1505R 0.08 probably_damaging(0.993) TCGA-HU-A4GN-01 3 113376613 113376613 T C KIAA2018 Missense_Mutation p.T1306A 0.19 benign(0.004) TCGA-HU-A4GN-01 3 114058003 114058003 G - ZBTB20 Frame_Shift_Del p.P692Lfs*43 0.14 TCGA-HU-A4GN-01 3 120489634 120489634 A - GTF2E1 Frame_Shift_Del p.D172Mfs*26 0.20 TCGA-HU-A4GN-01 3 121573659 121573659 A - EAF2 Frame_Shift_Del p.T112Qfs*30 0.22 TCGA-HU-A4GN-01 3 122647874 122647874 C T SEMA5B Missense_Mutation p.R223H 0.30 deleterious(0.05) probably_damaging(0.944) TCGA-HU-A4GN-01 3 124377290 124377290 C T KALRN Missense_Mutation p.H108Y 0.12 tolerated(0.06) probably_damaging(0.945) TCGA-HU-A4GN-01 3 124438200 124438200 C - RP11-71H17.7 5'Flank 0.15 TCGA-HU-A4GN-01 3 126071347 126071347 G A KLF15 Missense_Mutation p.T140I 0.25 deleterious(0) probably_damaging(0.996) TCGA-HU-A4GN-01 3 127323460 127323460 C T MCM2 Silent p.R82R 0.25 TCGA-HU-A4GN-01 3 130289784 130289784 G A COL6A6 Missense_Mutation p.G842S 0.25 tolerated(0.05) probably_damaging(1) TCGA-HU-A4GN-01 3 141626091 141626091 T C ATP1B3 Silent p.I107I 0.24 TCGA-HU-A4GN-01 3 142681357 142681357 G T PAQR9 Missense_Mutation p.F274L 0.16 tolerated(0.3) benign(0.006) TCGA-HU-A4GN-01 3 142735133 142735133 A G U2SURP Missense_Mutation p.E119G 0.23 deleterious(0) probably_damaging(0.973) TCGA-HU-A4GN-01 3 142840509 142840509 C T CHST2 Missense_Mutation p.P284L 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-HU-A4GN-01 3 151046205 151046205 G A P2RY13 Silent p.C213C 0.16 TCGA-HU-A4GN-01 3 151164416 151164416 C A IGSF10 Missense_Mutation p.S1118I 0.23 tolerated(0.17) benign(0) TCGA-HU-A4GN-01 3 154002773 154002773 C T DHX36 Missense_Mutation p.A679T 0.14 deleterious(0) probably_damaging(0.99) TCGA-HU-A4GN-01 3 154010350 154010350 G A DHX36 Nonsense_Mutation p.R602* 0.20 TCGA-HU-A4GN-01 3 156867109 156867109 C T CCNL1 Missense_Mutation p.R400Q 0.10 tolerated(0.17) benign(0) TCGA-HU-A4GN-01 3 164739135 164739135 C T SI Missense_Mutation p.V1046I 0.04 tolerated(0.17) benign(0.023) TCGA-HU-A4GN-01 3 169548401 169548401 C T LRRIQ4 Missense_Mutation p.A439V 0.32 deleterious(0.01) possibly_damaging(0.752) TCGA-HU-A4GN-01 3 169889147 169889147 T A PHC3 Intron 0.14 TCGA-HU-A4GN-01 3 183824060 183824060 C T HTR3E Missense_Mutation p.P383L 0.32 deleterious(0.04) benign(0.117) TCGA-HU-A4GN-01 3 183908909 183908909 A G ABCF3 Splice_Site p.X479_splice 0.33 TCGA-HU-A4GN-01 3 184073564 184073564 C T CLCN2 Missense_Mutation p.R363H 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-HU-A4GN-01 3 184550540 184550540 G A VPS8 Missense_Mutation p.D96N 0.25 tolerated(0.15) benign(0.132) TCGA-HU-A4GN-01 3 185183551 185183551 C T MAP3K13 Missense_Mutation p.R469C 0.21 deleterious(0) probably_damaging(1) TCGA-HU-A4GN-01 3 186571971 186571971 A G ADIPOQ Splice_Site p.X72_splice 0.16 TCGA-HU-A4GN-01 3 19559535 19559535 C G KCNH8 Missense_Mutation p.T863S 0.37 tolerated(0.18) probably_damaging(0.993) TCGA-HU-A4GN-01 3 195789785 195789785 A G TFRC Silent p.I448I 0.14 TCGA-HU-A4GN-01 3 196054330 196054330 G A TM4SF19 Silent p.T44T 0.14 TCGA-HU-A4GN-01 3 197241135 197241135 C A BDH1 Missense_Mutation p.G188C 0.14 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GN-01 3 23942333 23942333 T C NKIRAS1 Missense_Mutation p.K101R 0.17 deleterious(0) probably_damaging(0.967) TCGA-HU-A4GN-01 3 38622836 38622836 C T SCN5A Silent p.L938L 0.19 TCGA-HU-A4GN-01 3 38739984 38739984 C T SCN10A Missense_Mutation p.R1576H 0.17 deleterious(0.01) probably_damaging(0.992) TCGA-HU-A4GN-01 3 38768416 38768416 C T SCN10A Missense_Mutation p.R923H 0.07 tolerated(0.53) benign(0.008) TCGA-HU-A4GN-01 3 38888106 38888106 A G SCN11A 3'UTR 0.30 TCGA-HU-A4GN-01 3 38950583 38950583 C G SCN11A Missense_Mutation p.A402P 0.08 deleterious(0.01) possibly_damaging(0.851) TCGA-HU-A4GN-01 3 38950604 38950604 T G SCN11A Missense_Mutation p.T395P 0.07 deleterious(0) probably_damaging(1) TCGA-HU-A4GN-01 3 41288379 41288379 G A ULK4 3'UTR 0.25 TCGA-HU-A4GN-01 3 43596770 43596770 C A ANO10 Missense_Mutation p.Q556H 0.12 deleterious(0) probably_damaging(0.992) TCGA-HU-A4GN-01 3 44490207 44490207 T C ZNF445 Missense_Mutation p.N319S 0.23 tolerated(0.79) benign(0.292) TCGA-HU-A4GN-01 3 44700257 44700257 A C ZNF35 Missense_Mutation p.K134N 0.06 tolerated(0.15) benign(0.002) TCGA-HU-A4GN-01 3 45077258 45077258 C T CLEC3B Missense_Mutation p.R151C 0.15 deleterious(0.04) possibly_damaging(0.751) TCGA-HU-A4GN-01 3 46307587 46307587 G A CCR3 Missense_Mutation p.R334H 0.14 tolerated(0.55) benign(0.03) TCGA-HU-A4GN-01 3 46560523 46560523 G T LRRC2 Missense_Mutation p.S366Y 0.22 deleterious(0) probably_damaging(0.94) TCGA-HU-A4GN-01 3 47037022 47037022 A G NBEAL2 Silent p.P599P 0.11 TCGA-HU-A4GN-01 3 48696844 48696844 C A CELSR3 Missense_Mutation p.R1075L 0.22 tolerated(0.53) benign(0.006) TCGA-HU-A4GN-01 3 49160752 49160752 C T LAMB2 Missense_Mutation p.R1346H 0.21 tolerated(0.06) benign(0.003) TCGA-HU-A4GN-01 3 49716378 49716378 G A APEH Missense_Mutation p.R385Q 0.22 tolerated(0.44) benign(0.002) TCGA-HU-A4GN-01 3 49723673 49723673 A G MST1 Intron 0.14 TCGA-HU-A4GN-01 3 50150940 50150942 AGA - RBM5 In_Frame_Del p.K529del 0.27 TCGA-HU-A4GN-01 3 50617831 50617831 C T HEMK1 Missense_Mutation p.R334W 0.10 deleterious(0.01) benign(0.3) TCGA-HU-A4GN-01 3 51417604 51417604 C - DOCK3 Frame_Shift_Del p.P1852Qfs*45 0.21 TCGA-HU-A4GN-01 3 52282240 52282240 G A PPM1M Missense_Mutation p.R49Q 0.14 deleterious(0) probably_damaging(0.99) TCGA-HU-A4GN-01 3 52291409 52291409 C T WDR82 3'UTR 0.21 TCGA-HU-A4GN-01 3 52543930 52543930 G - STAB1 Frame_Shift_Del p.V800Cfs*113 0.28 TCGA-HU-A4GN-01 3 52860835 52860835 C T ITIH4 Missense_Mutation p.R164Q 0.12 tolerated(0.96) benign(0.021) TCGA-HU-A4GN-01 3 53212511 53212511 C T PRKCD Nonsense_Mutation p.Q25* 0.26 TCGA-HU-A4GN-01 3 53783318 53783318 C T CACNA1D Missense_Mutation p.S1133L 0.16 deleterious(0) probably_damaging(0.958) TCGA-HU-A4GN-01 3 56468581 56468581 G A ERC2 Missense_Mutation p.A152V 0.16 tolerated(0.16) benign(0.068) TCGA-HU-A4GN-01 3 56789105 56789105 G - ARHGEF3 Frame_Shift_Del p.S126Rfs*44 0.11 TCGA-HU-A4GN-01 3 57545470 57545470 C T PDE12 Silent p.S523S 0.20 TCGA-HU-A4GN-01 3 58552332 58552332 C T FAM107A Missense_Mutation p.E140K 0.10 tolerated(0.09) benign(0) TCGA-HU-A4GN-01 3 58792166 58792166 C T C3orf67 Missense_Mutation p.R480H 0.12 tolerated(1) benign(0.008) TCGA-HU-A4GN-01 3 61975386 61975386 C T PTPRG Missense_Mutation p.A93V 0.10 deleterious(0) benign(0.342) TCGA-HU-A4GN-01 3 64580089 64580089 C A ADAMTS9 Missense_Mutation p.G1401C 0.06 deleterious(0) probably_damaging(1) TCGA-HU-A4GN-01 3 66467568 66467568 G A LRIG1 Missense_Mutation p.P163L 0.13 tolerated(1) benign(0) TCGA-HU-A4GN-01 3 71247446 71247446 G A FOXP1 Silent p.C29C 0.26 TCGA-HU-A4GN-01 3 77089921 77089921 T G ROBO2 Intron 0.23 TCGA-HU-A4GN-01 3 87027842 87027842 G A VGLL3 Silent p.A79A 0.31 TCGA-HU-A4GN-01 3 9097969 9097969 C T SRGAP3 Missense_Mutation p.R358H 0.06 deleterious(0) possibly_damaging(0.704) TCGA-HU-A4GN-01 3 9483391 9483391 C T SETD5 Nonsense_Mutation p.Q309* 0.15 TCGA-HU-A4GN-01 3 9839414 9839416 CTC - ARPC4-TTLL3 In_Frame_Del p.S27del 0.17 TCGA-HU-A4GN-01 3 99514689 99514689 G A COL8A1 Silent p.P648P 0.14 TCGA-HU-A4GN-01 4 100789327 100789327 G A DAPP1 Silent p.S276S 0.14 TCGA-HU-A4GN-01 4 104103997 104103997 G A CENPE Silent p.S295S 0.26 TCGA-HU-A4GN-01 4 107246152 107246152 C T AIMP1 Missense_Mutation p.R20C 0.15 tolerated(0.07) benign(0.021) TCGA-HU-A4GN-01 4 114302735 114302735 G T ANK2 3'UTR 0.23 TCGA-HU-A4GN-01 4 114436226 114436226 C T CAMK2D Missense_Mutation p.C273Y 0.18 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-HU-A4GN-01 4 118005620 118005620 G A TRAM1L1 Silent p.Y310Y 0.08 TCGA-HU-A4GN-01 4 122853626 122853626 G A TRPC3 Missense_Mutation p.H263Y 0.13 deleterious(0) probably_damaging(1) TCGA-HU-A4GN-01 4 125590320 125590320 C T ANKRD50 Missense_Mutation p.S1371N 0.20 tolerated_low_confidence(0.44) benign(0.001) TCGA-HU-A4GN-01 4 126238618 126238618 C A FAT4 Missense_Mutation p.P351Q 0.12 probably_damaging(1) TCGA-HU-A4GN-01 4 126239735 126239735 T G FAT4 Silent p.T723T 0.25 TCGA-HU-A4GN-01 4 126372007 126372007 G T FAT4 Missense_Mutation p.C3279F 0.24 possibly_damaging(0.585) TCGA-HU-A4GN-01 4 126373015 126373015 G A FAT4 Missense_Mutation p.R3615Q 0.15 probably_damaging(0.996) TCGA-HU-A4GN-01 4 126373581 126373581 G A FAT4 Missense_Mutation p.D3804N 0.27 benign(0.024) TCGA-HU-A4GN-01 4 141583179 141583179 C T TBC1D9 Silent p.T557T 0.10 TCGA-HU-A4GN-01 4 146064586 146064586 A G OTUD4 Silent p.D473D 0.14 TCGA-HU-A4GN-01 4 152679951 152679951 A - PET112 Frame_Shift_Del p.F100Lfs*17 0.18 TCGA-HU-A4GN-01 4 153247366 153247366 C T FBXW7 Missense_Mutation p.R479Q 0.13 deleterious(0.03) probably_damaging(1) TCGA-HU-A4GN-01 4 155156861 155156861 G T DCHS2 Silent p.S2526S 0.13 TCGA-HU-A4GN-01 4 156710914 156710914 C T GUCY1B3 Missense_Mutation p.R116C 0.26 deleterious(0) possibly_damaging(0.883) TCGA-HU-A4GN-01 4 15733442 15733442 G A BST1 Missense_Mutation p.V311M 0.12 deleterious_low_confidence(0.02) benign(0.36) TCGA-HU-A4GN-01 4 166403505 166403505 C T CPE Missense_Mutation p.R262W 0.14 deleterious(0) possibly_damaging(0.877) TCGA-HU-A4GN-01 4 1730308 1730308 C - TACC3 Frame_Shift_Del p.M396Cfs*65 0.21 TCGA-HU-A4GN-01 4 185618812 185618812 C T CENPU Missense_Mutation p.V378I 0.26 tolerated(0.23) benign(0.003) TCGA-HU-A4GN-01 4 187540947 187540947 C T FAT1 Missense_Mutation p.A2265T 0.26 possibly_damaging(0.902) TCGA-HU-A4GN-01 4 3495067 3495067 C T DOK7 Missense_Mutation p.R452W 0.27 deleterious_low_confidence(0.03) possibly_damaging(0.487) TCGA-HU-A4GN-01 4 3526677 3526677 G A LRPAP1 Silent p.D102D 0.23 TCGA-HU-A4GN-01 4 367382 367382 A - ZNF141 Frame_Shift_Del p.I388Ffs*51 0.18 TCGA-HU-A4GN-01 4 38046057 38046058 - A TBC1D1 Frame_Shift_Ins p.N498Kfs*19 0.09 TCGA-HU-A4GN-01 4 38682250 38682250 C A KLF3 Missense_Mutation p.L2I 0.09 deleterious(0) possibly_damaging(0.899) TCGA-HU-A4GN-01 4 38691454 38691454 C - KLF3 Frame_Shift_Del p.L219* 0.11 TCGA-HU-A4GN-01 4 40438542 40438542 C T RBM47 Missense_Mutation p.G416R 0.14 tolerated(0.06) possibly_damaging(0.462) TCGA-HU-A4GN-01 4 438000 438000 G A ZNF721 Missense_Mutation p.R86C 0.09 tolerated(1) benign(0) TCGA-HU-A4GN-01 4 47938530 47938530 T C CNGA1 Missense_Mutation p.K730E 0.18 tolerated(0.13) benign(0.098) TCGA-HU-A4GN-01 4 55948117 55948125 TCTTACCCA - KDR Splice_Site p.X1282_splice 0.09 TCGA-HU-A4GN-01 4 56230218 56230218 C T SRD5A3 Intron 0.17 TCGA-HU-A4GN-01 4 56726616 56726616 T C EXOC1 Missense_Mutation p.V55A 0.14 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GN-01 4 6107625 6107625 C T JAKMIP1 Missense_Mutation p.A67T 0.26 tolerated(0.06) possibly_damaging(0.574) TCGA-HU-A4GN-01 4 6296830 6296830 A G WFS1 Missense_Mutation p.I259V 0.17 tolerated(0.77) benign(0.032) TCGA-HU-A4GN-01 4 6380228 6380228 A G PPP2R2C Silent p.F80F 0.29 TCGA-HU-A4GN-01 4 66286254 66286255 - T EPHA5 Frame_Shift_Ins p.G478Rfs*26 0.19 TCGA-HU-A4GN-01 4 7055912 7055912 G A TADA2B Missense_Mutation p.V132M 0.27 tolerated(0.17) benign(0.372) TCGA-HU-A4GN-01 4 8242564 8242566 TCT - SH3TC1 In_Frame_Del p.F1300del 0.12 TCGA-HU-A4GN-01 4 8242782 8242782 C A SH3TC1 3'UTR 0.25 TCGA-HU-A4GN-01 4 85708634 85708634 C T WDFY3 Splice_Site p.X1301_splice 0.08 TCGA-HU-A4GN-01 4 89618768 89618768 G A NAP1L5 Silent p.S46S 0.07 TCGA-HU-A4GN-01 4 90035667 90035667 A - TIGD2 Frame_Shift_Del p.K516Nfs*24 0.18 TCGA-HU-A4GN-01 4 90816212 90816212 T C MMRN1 Silent p.P30P 0.12 TCGA-HU-A4GN-01 4 99397420 99397420 A C TSPAN5 Missense_Mutation p.C221G 0.09 deleterious(0) probably_damaging(0.973) TCGA-HU-A4GN-01 5 102285672 102285672 A C PAM Missense_Mutation p.Q264P 0.16 deleterious(0.01) probably_damaging(0.969) TCGA-HU-A4GN-01 5 1078842 1078842 G A SLC12A7 Silent p.C476C 0.11 TCGA-HU-A4GN-01 5 11384809 11384809 G A CTNND2 Missense_Mutation p.T382M 0.18 deleterious(0.04) possibly_damaging(0.715) TCGA-HU-A4GN-01 5 129521508 129521508 T - CHSY3 3'UTR 0.23 TCGA-HU-A4GN-01 5 131931471 131931471 C T RAD50 Missense_Mutation p.R726C 0.25 deleterious(0) possibly_damaging(0.614) TCGA-HU-A4GN-01 5 1339036 1339036 C T CLPTM1L Missense_Mutation p.A180T 0.19 tolerated(1) benign(0.002) TCGA-HU-A4GN-01 5 134782702 134782702 C T C5orf20 Missense_Mutation p.E33K 0.15 tolerated_low_confidence(0.14) benign(0.005) TCGA-HU-A4GN-01 5 135391437 135391437 G A TGFBI Silent p.T493T 0.13 TCGA-HU-A4GN-01 5 137260772 137260772 A - PKD2L2 Frame_Shift_Del p.D534Mfs*32 0.21 TCGA-HU-A4GN-01 5 137476521 137476521 C T BRD8 Missense_Mutation p.R1163H 0.18 tolerated(0.1) benign(0.001) TCGA-HU-A4GN-01 5 137661709 137661709 C T CDC25C Splice_Site p.X123_splice 0.08 TCGA-HU-A4GN-01 5 137802862 137802862 G A EGR1 Missense_Mutation p.A242T 0.18 tolerated(0.85) unknown(0) TCGA-HU-A4GN-01 5 139739839 139739839 A C SLC4A9 Silent p.P6P 0.21 TCGA-HU-A4GN-01 5 139747338 139747338 G T SLC4A9 Missense_Mutation p.V761L 0.09 deleterious(0.03) probably_damaging(0.971) TCGA-HU-A4GN-01 5 139781730 139781730 G A ANKHD1 Missense_Mutation p.G60S 0.23 unknown(0) TCGA-HU-A4GN-01 5 140174689 140174689 G A PCDHA2 Missense_Mutation p.R47H 0.21 deleterious_low_confidence(0.03) possibly_damaging(0.767) TCGA-HU-A4GN-01 5 140176040 140176040 G A PCDHA2 Silent p.R497R 0.10 TCGA-HU-A4GN-01 5 140182244 140182244 G A PCDHA3 Missense_Mutation p.A488T 0.07 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-HU-A4GN-01 5 140203136 140203136 G A PCDHA5 Silent p.K592K 0.27 TCGA-HU-A4GN-01 5 140208845 140208845 C T PCDHA6 Missense_Mutation p.T390M 0.23 tolerated_low_confidence(0.1) benign(0.346) TCGA-HU-A4GN-01 5 140223022 140223022 G A PCDHA8 Missense_Mutation p.A706T 0.20 tolerated_low_confidence(0.08) benign(0.091) TCGA-HU-A4GN-01 5 140242305 140242305 G A AC005609.1 3'UTR 0.14 TCGA-HU-A4GN-01 5 140263462 140263462 G A PCDHA13 Missense_Mutation p.A537T 0.16 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-HU-A4GN-01 5 140263782 140263782 G A PCDHA13 Silent p.P643P 0.16 TCGA-HU-A4GN-01 5 140481823 140481823 C T PCDHB3 Silent p.R530R 0.09 TCGA-HU-A4GN-01 5 140515436 140515436 A - PCDHB5 Frame_Shift_Del p.I142Sfs*13 0.18 TCGA-HU-A4GN-01 5 140530412 140530412 G A PCDHB6 Missense_Mutation p.E192K 0.16 deleterious(0.01) benign(0.233) TCGA-HU-A4GN-01 5 140531180 140531180 G A PCDHB6 Missense_Mutation p.A448T 0.20 tolerated(0.32) benign(0.001) TCGA-HU-A4GN-01 5 140559448 140559448 G A PCDHB8 Silent p.T611T 0.14 TCGA-HU-A4GN-01 5 140712198 140712198 C T PCDHGA1 Silent p.H649H 0.22 TCGA-HU-A4GN-01 5 140712241 140712241 G A PCDHGA1 Missense_Mutation p.V664M 0.21 deleterious_low_confidence(0.04) possibly_damaging(0.473) TCGA-HU-A4GN-01 5 140719675 140719675 C T PCDHGA2 Silent p.N379N 0.25 TCGA-HU-A4GN-01 5 140751770 140751770 G A PCDHGB3 Nonsense_Mutation p.W603* 0.16 TCGA-HU-A4GN-01 5 140763761 140763761 T C PCDHGA7 Missense_Mutation p.L432S 0.13 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-HU-A4GN-01 5 140764588 140764588 G A PCDHGA7 Missense_Mutation p.V708I 0.27 tolerated_low_confidence(0.09) possibly_damaging(0.604) TCGA-HU-A4GN-01 5 140769384 140769384 C T PCDHGB4 Missense_Mutation p.R645C 0.20 deleterious(0.04) benign(0.329) TCGA-HU-A4GN-01 5 140810686 140810688 AGT - PCDHGA12 In_Frame_Del p.V121del 0.14 TCGA-HU-A4GN-01 5 140866576 140866576 G T PCDHGC4 Missense_Mutation p.E612D 0.09 tolerated(0.08) benign(0.261) TCGA-HU-A4GN-01 5 141694677 141694677 G A SPRY4 Silent p.S22S 0.11 TCGA-HU-A4GN-01 5 147024421 147024421 A T JAKMIP2 Missense_Mutation p.S359T 0.14 tolerated(0.51) benign(0.006) TCGA-HU-A4GN-01 5 147781951 147781951 G A FBXO38 Nonsense_Mutation p.W156* 0.15 TCGA-HU-A4GN-01 5 147807059 147807059 C T FBXO38 Silent p.G734G 0.12 TCGA-HU-A4GN-01 5 149206386 149206386 C - PPARGC1B Frame_Shift_Del p.S137Afs*69 0.20 TCGA-HU-A4GN-01 5 150436492 150436492 G A TNIP1 Silent p.D154D 0.14 TCGA-HU-A4GN-01 5 153078486 153078486 C T GRIA1 Silent p.Y445Y 0.23 TCGA-HU-A4GN-01 5 156816266 156816266 G A CYFIP2 Missense_Mutation p.E1067K 0.17 tolerated(0.1) benign(0.13) TCGA-HU-A4GN-01 5 156915311 156915311 G A ADAM19 Missense_Mutation p.R838W 0.26 deleterious(0) probably_damaging(1) TCGA-HU-A4GN-01 5 160042879 160042879 A G ATP10B Silent p.T873T 0.20 TCGA-HU-A4GN-01 5 161112944 161112944 G C GABRA6 5'UTR 0.18 TCGA-HU-A4GN-01 5 167420177 167420177 G A TENM2 Silent p.A392A 0.15 TCGA-HU-A4GN-01 5 171305054 171305054 T A FBXW11 Missense_Mutation p.E290V 0.23 deleterious(0.03) possibly_damaging(0.497) TCGA-HU-A4GN-01 5 177546741 177546741 C T N4BP3 Missense_Mutation p.R53C 0.13 deleterious(0) probably_damaging(0.997) TCGA-HU-A4GN-01 5 178505905 178505905 G A ZNF354C Missense_Mutation p.G158R 0.17 tolerated(0.73) benign(0.01) TCGA-HU-A4GN-01 5 179382606 179382607 - T RNF130 3'UTR 0.10 TCGA-HU-A4GN-01 5 179739447 179739447 C A GFPT2 Missense_Mutation p.G510V 0.21 deleterious(0) possibly_damaging(0.704) TCGA-HU-A4GN-01 5 1814469 1814469 C T NDUFS6 Missense_Mutation p.A68V 0.06 deleterious(0.04) possibly_damaging(0.752) TCGA-HU-A4GN-01 5 2748668 2748668 G A IRX2 Missense_Mutation p.T385M 0.19 deleterious(0) probably_damaging(0.996) TCGA-HU-A4GN-01 5 33624406 33624406 G A ADAMTS12 Silent p.C691C 0.26 TCGA-HU-A4GN-01 5 33947392 33947392 A C SLC45A2 Missense_Mutation p.I415S 0.18 deleterious(0) probably_damaging(0.924) TCGA-HU-A4GN-01 5 36049012 36049012 T - UGT3A2 Frame_Shift_Del p.K274Nfs*25 0.19 TCGA-HU-A4GN-01 5 37022491 37022491 T C NIPBL Missense_Mutation p.L1858S 0.19 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GN-01 5 39383287 39383287 G A DAB2 Silent p.N258N 0.07 TCGA-HU-A4GN-01 5 40767586 40767586 G A PRKAA1 Missense_Mutation p.A283V 0.21 tolerated(0.36) probably_damaging(0.911) TCGA-HU-A4GN-01 5 483524 483524 G A SLC9A3 Missense_Mutation p.R336C 0.45 deleterious(0) probably_damaging(0.977) TCGA-HU-A4GN-01 5 54552344 54552344 G A DHX29 Missense_Mutation p.T1361M 0.15 tolerated(0.16) benign(0.005) TCGA-HU-A4GN-01 5 55236979 55236979 C T IL6ST Silent p.A896A 0.21 TCGA-HU-A4GN-01 5 63256583 63256583 C A HTR1A Nonsense_Mutation p.E322* 0.14 TCGA-HU-A4GN-01 5 65465943 65465943 A - SREK1 Frame_Shift_Del p.K357Nfs*34 0.17 TCGA-HU-A4GN-01 5 67591106 67591106 A G PIK3R1 Missense_Mutation p.K567E 0.13 deleterious(0) possibly_damaging(0.9) TCGA-HU-A4GN-01 5 67592032 67592033 - C PIK3R1 Frame_Shift_Ins p.H618Pfs*3 0.14 TCGA-HU-A4GN-01 5 70785246 70785246 G - BDP1 Frame_Shift_Del p.C410Lfs*4 0.09 TCGA-HU-A4GN-01 5 75428050 75428050 G T SV2C Missense_Mutation p.G159C 0.11 deleterious(0) probably_damaging(1) TCGA-HU-A4GN-01 5 79025669 79025669 C T CMYA5 Nonsense_Mutation p.Q361* 0.20 TCGA-HU-A4GN-01 5 79366538 79366538 G A THBS4 Missense_Mutation p.E509K 0.27 tolerated(0.08) benign(0.363) TCGA-HU-A4GN-01 5 865542 865542 G A BRD9 Silent p.D560D 0.17 TCGA-HU-A4GN-01 5 90159637 90159637 T G GPR98 Missense_Mutation p.L5940R 0.21 probably_damaging(0.973) TCGA-HU-A4GN-01 5 9224864 9224864 G A SEMA5A Missense_Mutation p.R190C 0.09 deleterious(0) probably_damaging(0.97) TCGA-HU-A4GN-01 5 94852270 94852270 C T TTC37 Missense_Mutation p.A846T 0.15 deleterious(0) probably_damaging(1) TCGA-HU-A4GN-01 5 96130807 96130807 G A ERAP1 Missense_Mutation p.A286V 0.12 deleterious(0) probably_damaging(0.944) TCGA-HU-A4GN-01 6 10990047 10990047 C T ELOVL2 Silent p.T218T 0.10 TCGA-HU-A4GN-01 6 110146440 110146440 G A FIG4 Missense_Mutation p.R899Q 0.08 tolerated(0.32) benign(0.061) TCGA-HU-A4GN-01 6 110752462 110752462 A G SLC22A16 Missense_Mutation p.V478A 0.31 deleterious(0) probably_damaging(0.944) TCGA-HU-A4GN-01 6 111650820 111650820 G A REV3L Missense_Mutation p.A2719V 0.19 deleterious(0) probably_damaging(1) TCGA-HU-A4GN-01 6 116836936 116836936 C T FAM26E Silent p.S238S 0.20 TCGA-HU-A4GN-01 6 116912077 116912077 A G RWDD1 Missense_Mutation p.N192D 0.08 tolerated(0.07) benign(0.006) TCGA-HU-A4GN-01 6 117023264 117023264 C T KPNA5 Missense_Mutation p.P173L 0.19 deleterious(0) probably_damaging(1) TCGA-HU-A4GN-01 6 117622204 117622205 - A ROS1 Frame_Shift_Ins p.N2224Kfs*2 0.10 TCGA-HU-A4GN-01 6 123539723 123539723 T C TRDN 3'UTR 0.17 TCGA-HU-A4GN-01 6 127796917 127796917 C T SOGA3 Missense_Mutation p.D752N 0.09 deleterious(0) probably_damaging(1) TCGA-HU-A4GN-01 6 129901237 129901238 - A ARHGAP18 Frame_Shift_Ins p.L626Ffs*3 0.14 TCGA-HU-A4GN-01 6 132938520 132938520 C T TAAR2 Nonsense_Mutation p.W275* 0.19 TCGA-HU-A4GN-01 6 132938576 132938576 C T TAAR2 Missense_Mutation p.D257N 0.27 deleterious(0.03) probably_damaging(0.963) TCGA-HU-A4GN-01 6 133849878 133849878 T C EYA4 Missense_Mutation p.W619R 0.11 deleterious(0) probably_damaging(1) TCGA-HU-A4GN-01 6 138200310 138200310 G A TNFAIP3 Silent p.P576P 0.07 TCGA-HU-A4GN-01 6 139242224 139242224 G T REPS1 Missense_Mutation p.T459N 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-HU-A4GN-01 6 143091172 143091172 T C HIVEP2 Silent p.E1568E 0.18 TCGA-HU-A4GN-01 6 143091178 143091178 T C HIVEP2 Silent p.S1566S 0.11 TCGA-HU-A4GN-01 6 150210638 150210638 G T RAET1E Silent p.T156T 0.15 TCGA-HU-A4GN-01 6 151153326 151153326 G T PLEKHG1 Nonsense_Mutation p.G1027* 0.22 TCGA-HU-A4GN-01 6 151669964 151669964 C T AKAP12 Silent p.I146I 0.23 TCGA-HU-A4GN-01 6 152540258 152540258 C T SYNE1 Silent p.E7308E 0.15 TCGA-HU-A4GN-01 6 152615204 152615205 - T SYNE1 Frame_Shift_Ins p.I5914Nfs*13 0.18 TCGA-HU-A4GN-01 6 153347651 153347651 C A RGS17 Silent p.G49G 0.20 TCGA-HU-A4GN-01 6 154771281 154771281 C T CNKSR3 Missense_Mutation p.R55Q 0.09 tolerated(0.05) possibly_damaging(0.672) TCGA-HU-A4GN-01 6 155561732 155561732 G A TIAM2 Silent p.P1079P 0.15 TCGA-HU-A4GN-01 6 158497676 158497676 G A SYNJ2 Missense_Mutation p.E771K 0.06 deleterious(0) probably_damaging(1) TCGA-HU-A4GN-01 6 161139450 161139451 - CA PLG Frame_Shift_Ins p.N308Ifs*64 0.09 TCGA-HU-A4GN-01 6 163987695 163987695 T - QKI Intron 0.35 TCGA-HU-A4GN-01 6 170632250 170632250 C A FAM120B Silent p.T606T 0.27 TCGA-HU-A4GN-01 6 18122100 18122100 G A NHLRC1 Silent p.F246F 0.19 TCGA-HU-A4GN-01 6 27368577 27368577 G T ZNF391 Missense_Mutation p.G143V 0.10 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GN-01 6 2783645 2783645 G A WRNIP1 Missense_Mutation p.E498K 0.26 deleterious(0.01) possibly_damaging(0.642) TCGA-HU-A4GN-01 6 28053571 28053571 T C ZNF165 Silent p.L105L 0.16 TCGA-HU-A4GN-01 6 30140225 30140225 G A TRIM15 3'UTR 0.18 TCGA-HU-A4GN-01 6 30309680 30309680 G A TRIM39 Missense_Mutation p.D401N 0.16 tolerated(0.11) benign(0.129) TCGA-HU-A4GN-01 6 30617508 30617508 A G C6orf136 Silent p.A263A 0.04 TCGA-HU-A4GN-01 6 30672977 30672977 G A MDC1 Missense_Mutation p.T1328I 0.18 tolerated(0.08) benign(0) TCGA-HU-A4GN-01 6 30861185 30861185 C T DDR1 Silent p.R444R 0.20 TCGA-HU-A4GN-01 6 31084004 31084004 G A CDSN Missense_Mutation p.S463F 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.702) TCGA-HU-A4GN-01 6 31525862 31525862 G A NFKBIL1 Missense_Mutation p.R207Q 0.34 tolerated(0.16) benign(0.003) TCGA-HU-A4GN-01 6 31595588 31595588 A G PRRC2A Missense_Mutation p.D446G 0.20 unknown(0) TCGA-HU-A4GN-01 6 31778571 31778571 C T HSPA1L Silent p.L393L 0.19 TCGA-HU-A4GN-01 6 31933609 31933609 G A SKIV2L Missense_Mutation p.R674H 0.24 deleterious(0) probably_damaging(0.997) TCGA-HU-A4GN-01 6 32096525 32096525 G A FKBPL Missense_Mutation p.R345C 0.15 deleterious(0.03) probably_damaging(0.95) TCGA-HU-A4GN-01 6 33157112 33157112 G A COL11A2 Missense_Mutation p.R73C 0.26 probably_damaging(0.976) TCGA-HU-A4GN-01 6 33382566 33382566 C - PHF1 Frame_Shift_Del p.P338Lfs*39 0.11 TCGA-HU-A4GN-01 6 33391326 33391326 G A SYNGAP1 Missense_Mutation p.R47Q 0.21 tolerated(0.1) benign(0.011) TCGA-HU-A4GN-01 6 33694648 33694648 A C IP6K3 Missense_Mutation p.L150R 0.05 tolerated(0.26) benign(0.006) TCGA-HU-A4GN-01 6 34824084 34824084 C T UHRF1BP1 Silent p.L397L 0.06 TCGA-HU-A4GN-01 6 36995778 36995778 C T FGD2 Missense_Mutation p.P603S 0.24 tolerated(0.12) benign(0.027) TCGA-HU-A4GN-01 6 43019075 43019075 C A CUL7 Missense_Mutation p.E372D 0.28 tolerated(0.11) benign(0.005) TCGA-HU-A4GN-01 6 43152294 43152294 G A CUL9 Silent p.E82E 0.15 TCGA-HU-A4GN-01 6 43416650 43416650 T - ABCC10 Frame_Shift_Del p.L1332Cfs*25 0.09 TCGA-HU-A4GN-01 6 43472983 43472983 G A TJAP1 Missense_Mutation p.R355H 0.26 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GN-01 6 43565480 43565480 A T POLH Missense_Mutation p.I180F 0.21 tolerated(0.87) benign(0.001) TCGA-HU-A4GN-01 6 46658575 46658575 C T TDRD6 Nonsense_Mutation p.Q904* 0.21 TCGA-HU-A4GN-01 6 49574918 49574918 C A RHAG Missense_Mutation p.Q361H 0.11 deleterious(0) probably_damaging(0.987) TCGA-HU-A4GN-01 6 50807909 50807909 C T TFAP2B Silent p.C327C 0.16 TCGA-HU-A4GN-01 6 52329708 52329708 G A EFHC1 Missense_Mutation p.C311Y 0.12 deleterious(0) probably_damaging(0.947) TCGA-HU-A4GN-01 6 56485020 56485020 T - DST Intron 0.16 TCGA-HU-A4GN-01 6 72892075 72892075 G - RIMS1 Frame_Shift_Del p.V301Wfs*61 0.17 TCGA-HU-A4GN-01 6 73017019 73017019 G A RIMS1 Silent p.K1303K 0.14 TCGA-HU-A4GN-01 6 73843172 73843172 C T KCNQ5 Missense_Mutation p.R445C 0.16 deleterious(0.02) benign(0.429) TCGA-HU-A4GN-01 6 74351590 74351590 A - SLC17A5 Frame_Shift_Del p.Y117Mfs*17 0.08 TCGA-HU-A4GN-01 6 7565702 7565702 C T DSP Silent p.Y296Y 0.22 TCGA-HU-A4GN-01 6 7569492 7569492 C T DSP Missense_Mutation p.P498L 0.29 probably_damaging(0.998) TCGA-HU-A4GN-01 6 75812406 75812406 C T COL12A1 Silent p.G2774G 0.20 TCGA-HU-A4GN-01 6 75828810 75828810 C T COL12A1 Missense_Mutation p.G2435S 0.15 probably_damaging(1) TCGA-HU-A4GN-01 6 75841699 75841699 C T COL12A1 Missense_Mutation p.R1965H 0.29 probably_damaging(0.97) TCGA-HU-A4GN-01 6 76024548 76024548 T C FILIP1 Missense_Mutation p.K334E 0.14 deleterious(0) possibly_damaging(0.627) TCGA-HU-A4GN-01 6 78172722 78172722 G A HTR1B Silent p.C133C 0.06 TCGA-HU-A4GN-01 6 79607819 79607819 G A IRAK1BP1 Missense_Mutation p.R184H 0.09 tolerated(0.07) probably_damaging(0.976) TCGA-HU-A4GN-01 6 84233542 84233542 G A PRSS35 Missense_Mutation p.D128N 0.06 deleterious(0.01) probably_damaging(1) TCGA-HU-A4GN-01 6 85446891 85446891 C T TBX18 Missense_Mutation p.G446S 0.06 tolerated(1) benign(0) TCGA-HU-A4GN-01 6 91254334 91254334 G A MAP3K7 Missense_Mutation p.R410W 0.14 deleterious(0) possibly_damaging(0.895) TCGA-HU-A4GN-01 6 96034845 96034845 G A MANEA Missense_Mutation p.R177H 0.06 tolerated(0.16) benign(0.006) TCGA-HU-A4GN-01 7 100482596 100482596 G A SRRT Missense_Mutation p.G365D 0.13 tolerated(0.31) benign(0) TCGA-HU-A4GN-01 7 100674455 100674455 A G MUC17 Missense_Mutation p.D46G 0.13 benign(0) TCGA-HU-A4GN-01 7 101839974 101839974 C - CUX1 Frame_Shift_Del p.P441Lfs*27 0.24 TCGA-HU-A4GN-01 7 103143664 103143664 C T RELN Missense_Mutation p.C2763Y 0.20 deleterious(0) probably_damaging(0.956) TCGA-HU-A4GN-01 7 103969413 103969413 C T LHFPL3 Silent p.G62G 0.17 TCGA-HU-A4GN-01 7 106508673 106508673 G A PIK3CG Missense_Mutation p.V223I 0.20 tolerated(0.34) benign(0.027) TCGA-HU-A4GN-01 7 107258914 107258914 T - BCAP29 Frame_Shift_Del p.L306* 0.15 TCGA-HU-A4GN-01 7 107580735 107580735 C T LAMB1 Missense_Mutation p.V1154I 0.24 tolerated(0.22) benign(0.008) TCGA-HU-A4GN-01 7 107824976 107824976 T G NRCAM Silent p.T706T 0.16 TCGA-HU-A4GN-01 7 110764637 110764637 A - LRRN3 Frame_Shift_Del p.K605Nfs*3 0.09 TCGA-HU-A4GN-01 7 111644152 111644152 G A DOCK4 Silent p.G24G 0.31 TCGA-HU-A4GN-01 7 120971947 120971947 G A WNT16 Missense_Mutation p.G188R 0.06 tolerated(0.59) benign(0.001) TCGA-HU-A4GN-01 7 124404756 124404756 G A GPR37 Missense_Mutation p.P92L 0.12 tolerated_low_confidence(0.18) benign(0.006) TCGA-HU-A4GN-01 7 127714599 127714599 G A SND1 Missense_Mutation p.G609S 0.20 deleterious(0.03) probably_damaging(0.978) TCGA-HU-A4GN-01 7 128494150 128494150 C T FLNC Missense_Mutation p.R2203C 0.10 tolerated(0.16) possibly_damaging(0.792) TCGA-HU-A4GN-01 7 131853208 131853208 G A PLXNA4 Missense_Mutation p.R1381C 0.25 deleterious(0.01) probably_damaging(1) TCGA-HU-A4GN-01 7 135366416 135366416 T C SLC13A4 Silent p.G592G 0.18 TCGA-HU-A4GN-01 7 136700605 136700605 C G CHRM2 Silent p.T331T 0.20 TCGA-HU-A4GN-01 7 136912741 136912741 T - PTN 3'UTR 0.18 TCGA-HU-A4GN-01 7 138601880 138601880 G A KIAA1549 Missense_Mutation p.A831V 0.23 tolerated(0.97) benign(0.002) TCGA-HU-A4GN-01 7 141490993 141490993 A G TAS2R5 Missense_Mutation p.R278G 0.04 deleterious(0.01) possibly_damaging(0.497) TCGA-HU-A4GN-01 7 141673410 141673410 G T TAS2R38 Missense_Mutation p.A27E 0.21 tolerated(0.05) probably_damaging(0.936) TCGA-HU-A4GN-01 7 142575711 142575711 T C TRPV6 Missense_Mutation p.K66R 0.15 tolerated(0.53) benign(0.068) TCGA-HU-A4GN-01 7 142583339 142583339 C - TRPV6 5'UTR 0.17 TCGA-HU-A4GN-01 7 143057251 143057251 G A FAM131B Intron 0.27 TCGA-HU-A4GN-01 7 143085633 143085633 G A ZYX Missense_Mutation p.R399H 0.14 deleterious(0.04) probably_damaging(0.998) TCGA-HU-A4GN-01 7 147815286 147815286 C T CNTNAP2 Silent p.S820S 0.10 TCGA-HU-A4GN-01 7 148311382 148311382 C T C7orf33 Silent p.Y151Y 0.09 TCGA-HU-A4GN-01 7 148489851 148489851 T C CUL1 Missense_Mutation p.Y614H 0.09 deleterious(0) probably_damaging(0.968) TCGA-HU-A4GN-01 7 148709400 148709400 G A PDIA4 Missense_Mutation p.L223F 0.12 deleterious(0) probably_damaging(0.993) TCGA-HU-A4GN-01 7 149515750 149515750 G C SSPO RNA 0.11 TCGA-HU-A4GN-01 7 154585835 154585835 G A DPP6 Missense_Mutation p.A395T 0.20 deleterious(0.02) probably_damaging(0.943) TCGA-HU-A4GN-01 7 158472698 158472698 G A NCAPG2 Missense_Mutation p.A367V 0.32 tolerated(0.3) benign(0.008) TCGA-HU-A4GN-01 7 158534291 158534291 C T ESYT2 Silent p.P724P 0.12 TCGA-HU-A4GN-01 7 158734830 158734830 C - WDR60 Frame_Shift_Del p.N1000Tfs*36 0.11 TCGA-HU-A4GN-01 7 23385595 23385596 - T IGF2BP3 Frame_Shift_Ins p.I302Nfs*2 0.33 TCGA-HU-A4GN-01 7 24331361 24331361 G A NPY 3'UTR 0.17 TCGA-HU-A4GN-01 7 2578880 2578880 G A BRAT1 Missense_Mutation p.A568V 0.17 deleterious(0) benign(0.376) TCGA-HU-A4GN-01 7 27213837 27213837 A - HOXA10 Frame_Shift_Del p.L30Wfs*74 0.25 TCGA-HU-A4GN-01 7 2959215 2959215 G A CARD11 Silent p.D767D 0.29 TCGA-HU-A4GN-01 7 31013693 31013693 C A GHRHR Missense_Mutation p.L231M 0.11 deleterious(0) probably_damaging(0.986) TCGA-HU-A4GN-01 7 31887708 31887708 G A PDE1C Missense_Mutation p.S345F 0.06 deleterious(0) probably_damaging(1) TCGA-HU-A4GN-01 7 33014897 33014897 G A FKBP9 Silent p.P157P 0.19 TCGA-HU-A4GN-01 7 42005111 42005111 T C GLI3 Missense_Mutation p.Q1187R 0.06 tolerated(0.08) benign(0.11) TCGA-HU-A4GN-01 7 42005485 42005485 C T GLI3 Silent p.S1062S 0.15 TCGA-HU-A4GN-01 7 44302628 44302628 G A CAMK2B Missense_Mutation p.R66C 0.19 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-HU-A4GN-01 7 4821204 4821204 A G AP5Z1 Missense_Mutation p.E62G 0.22 deleterious(0.04) benign(0.363) TCGA-HU-A4GN-01 7 4830319 4830319 G A AP5Z1 Missense_Mutation p.E652K 0.19 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GN-01 7 50367275 50367275 G A IKZF1 Missense_Mutation p.D28N 0.19 deleterious(0) probably_damaging(0.947) TCGA-HU-A4GN-01 7 5112677 5112677 G A RBAK-RBAKDN 3'UTR 0.14 TCGA-HU-A4GN-01 7 5257644 5257644 A C WIPI2 Missense_Mutation p.K223T 0.12 tolerated(0.07) benign(0.384) TCGA-HU-A4GN-01 7 56128220 56128220 G T CCT6A Intron 0.10 TCGA-HU-A4GN-01 7 66297996 66297996 C T GTF2IRD1P1 RNA 0.32 TCGA-HU-A4GN-01 7 74197385 74197385 C T NCF1 Silent p.V185V 0.20 TCGA-HU-A4GN-01 7 74486480 74486480 C T WBSCR16 Missense_Mutation p.G143E 0.06 deleterious(0) probably_damaging(0.994) TCGA-HU-A4GN-01 7 75167506 75167506 G A HIP1 Missense_Mutation p.T1034I 0.13 tolerated_low_confidence(0.09) benign(0.012) TCGA-HU-A4GN-01 7 77325880 77325880 T G RSBN1L Missense_Mutation p.S32A 0.14 tolerated_low_confidence(0.79) benign(0.198) TCGA-HU-A4GN-01 7 80430101 80430101 G T SEMA3C Missense_Mutation p.L320I 0.07 tolerated(0.46) benign(0.009) TCGA-HU-A4GN-01 7 86824094 86824094 C T DMTF1 Missense_Mutation p.A708V 0.25 deleterious_low_confidence(0.04) benign(0.02) TCGA-HU-A4GN-01 7 87762257 87762257 C T ADAM22 Silent p.G356G 0.07 TCGA-HU-A4GN-01 7 91603085 91603085 A - AKAP9 Frame_Shift_Del p.K39Rfs*17 0.27 TCGA-HU-A4GN-01 7 91763674 91763674 G A CYP51A1 Missense_Mutation p.A2V 0.10 deleterious_low_confidence(0) unknown(0) TCGA-HU-A4GN-01 7 93519522 93519522 G A TFPI2 Silent p.Y66Y 0.05 TCGA-HU-A4GN-01 7 96651532 96651532 C T DLX5 Missense_Mutation p.E169K 0.11 deleterious(0.01) benign(0.406) TCGA-HU-A4GN-01 7 98249051 98249051 C T NPTX2 Missense_Mutation p.R175C 0.14 deleterious(0) possibly_damaging(0.462) TCGA-HU-A4GN-01 7 98519385 98519385 C T TRRAP Missense_Mutation p.R878C 0.16 possibly_damaging(0.556) TCGA-HU-A4GN-01 7 98606058 98606058 A G TRRAP Silent p.S3590S 0.22 TCGA-HU-A4GN-01 7 99217366 99217366 G A ZSCAN25 Missense_Mutation p.R46Q 0.21 deleterious(0) probably_damaging(0.994) TCGA-HU-A4GN-01 7 99661618 99661618 C A ZSCAN21 Missense_Mutation p.P267H 0.09 tolerated(0.78) benign(0.003) TCGA-HU-A4GN-01 8 101648123 101648123 A G SNX31 Splice_Site p.X86_splice 0.18 TCGA-HU-A4GN-01 8 117861199 117861199 G A RAD21 Missense_Mutation p.L564F 0.15 tolerated(0.17) probably_damaging(0.994) TCGA-HU-A4GN-01 8 124748069 124748069 C A ANXA13 Missense_Mutation p.D22Y 0.05 deleterious(0.04) benign(0.179) TCGA-HU-A4GN-01 8 125033884 125033884 A - FER1L6 Frame_Shift_Del p.I705Sfs*94 0.12 TCGA-HU-A4GN-01 8 125565271 125565273 TCT - MTSS1 In_Frame_Del p.K743del 0.24 TCGA-HU-A4GN-01 8 125565703 125565703 G A MTSS1 Missense_Mutation p.R600C 0.17 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GN-01 8 128428447 128428447 G A POU5F1B Silent p.P112P 0.20 TCGA-HU-A4GN-01 8 131916225 131916225 G A ADCY8 Silent p.G568G 0.18 TCGA-HU-A4GN-01 8 132002688 132002688 C A ADCY8 Missense_Mutation p.R354L 0.06 deleterious(0) probably_damaging(0.987) TCGA-HU-A4GN-01 8 133823330 133823330 A - PHF20L1 Frame_Shift_Del p.K298Rfs*66 0.20 TCGA-HU-A4GN-01 8 133854799 133854799 C T PHF20L1 Silent p.S809S 0.15 TCGA-HU-A4GN-01 8 135614475 135614475 T A ZFAT Missense_Mutation p.Q496L 0.07 tolerated(0.07) benign(0.321) TCGA-HU-A4GN-01 8 141561427 141561427 G A AGO2 Missense_Mutation p.R460C 0.06 deleterious(0) possibly_damaging(0.448) TCGA-HU-A4GN-01 8 142221613 142221613 G T SLC45A4 Silent p.P775P 0.14 TCGA-HU-A4GN-01 8 143846082 143846082 C A LYNX1 Missense_Mutation p.G113C 0.11 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GN-01 8 143866642 143866642 G T LY6D Missense_Mutation p.L128M 0.13 deleterious_low_confidence(0) unknown(0) TCGA-HU-A4GN-01 8 144351661 144351661 C A GLI4 Missense_Mutation p.P32H 0.12 deleterious(0.01) benign(0.276) TCGA-HU-A4GN-01 8 144695702 144695702 C A TSTA3 Nonsense_Mutation p.E268* 0.18 TCGA-HU-A4GN-01 8 16884802 16884802 G A MICU3 Missense_Mutation p.R5Q 0.09 deleterious_low_confidence(0) benign(0) TCGA-HU-A4GN-01 8 16884830 16884830 G A MICU3 Silent p.V14V 0.18 TCGA-HU-A4GN-01 8 17088124 17088124 G - CNOT7 3'UTR 0.41 TCGA-HU-A4GN-01 8 18393262 18393262 T - PSD3 Frame_Shift_Del p.V1046Lfs*17 0.12 TCGA-HU-A4GN-01 8 1842672 1842672 C T ARHGEF10 Silent p.I458I 0.09 TCGA-HU-A4GN-01 8 18729874 18729874 T C PSD3 Missense_Mutation p.Q167R 0.06 tolerated_low_confidence(0.26) benign(0.159) TCGA-HU-A4GN-01 8 19680854 19680854 G A INTS10 Missense_Mutation p.R189Q 0.12 tolerated(0.14) benign(0) TCGA-HU-A4GN-01 8 21892019 21892019 A G NPM2 Splice_Site p.X178_splice 0.05 TCGA-HU-A4GN-01 8 22368626 22368626 A G PPP3CC Missense_Mutation p.Y171C 0.06 deleterious(0) probably_damaging(1) TCGA-HU-A4GN-01 8 22472983 22472983 G A CCAR2 Silent p.R417R 0.05 TCGA-HU-A4GN-01 8 24771944 24771944 C T NEFM Missense_Mutation p.A213V 0.10 deleterious(0) unknown(0) TCGA-HU-A4GN-01 8 25257429 25257429 T - DOCK5 Frame_Shift_Del p.F1571Lfs*19 0.32 TCGA-HU-A4GN-01 8 26366267 26366267 G A PNMA2 Missense_Mutation p.A2V 0.09 tolerated(0.07) possibly_damaging(0.716) TCGA-HU-A4GN-01 8 27396184 27396184 A G EPHX2 Silent p.L417L 0.15 TCGA-HU-A4GN-01 8 28575348 28575348 G A EXTL3 Missense_Mutation p.R591H 0.22 deleterious(0.03) benign(0.335) TCGA-HU-A4GN-01 8 28575431 28575431 T G EXTL3 Missense_Mutation p.F619V 0.04 tolerated(0.07) benign(0.028) TCGA-HU-A4GN-01 8 28974382 28974382 C T KIF13B Missense_Mutation p.R1268H 0.15 deleterious(0) probably_damaging(1) TCGA-HU-A4GN-01 8 29006250 29006250 G A KIF13B Nonsense_Mutation p.R553* 0.20 TCGA-HU-A4GN-01 8 3057289 3057289 C T CSMD1 Missense_Mutation p.R1714Q 0.33 probably_damaging(0.981) TCGA-HU-A4GN-01 8 30695196 30695197 - G TEX15 Frame_Shift_Ins p.D2486Rfs*10 0.08 TCGA-HU-A4GN-01 8 3224726 3224726 G A CSMD1 Silent p.H981H 0.12 TCGA-HU-A4GN-01 8 33310939 33310939 C T FUT10 Silent p.T57T 0.07 TCGA-HU-A4GN-01 8 37633536 37633536 T C PROSC Splice_Site p.X232_splice 0.18 TCGA-HU-A4GN-01 8 38133883 38133883 T C WHSC1L1 Missense_Mutation p.M1335V 0.28 deleterious(0.05) benign(0.146) TCGA-HU-A4GN-01 8 38205365 38205365 T C WHSC1L1 Missense_Mutation p.T109A 0.06 tolerated_low_confidence(1) benign(0.01) TCGA-HU-A4GN-01 8 48878898 48878898 C T MCM4 Silent p.C328C 0.15 TCGA-HU-A4GN-01 8 49832848 49832848 C T SNAI2 Missense_Mutation p.G78R 0.22 tolerated(0.54) possibly_damaging(0.51) TCGA-HU-A4GN-01 8 51465608 51465608 A G SNTG1 Splice_Site p.X227_splice 0.20 TCGA-HU-A4GN-01 8 55533898 55533898 G C RP1 Silent p.P124P 0.24 TCGA-HU-A4GN-01 8 55540617 55540617 A G RP1 Missense_Mutation p.N1392S 0.11 tolerated(0.05) benign(0.156) TCGA-HU-A4GN-01 8 56015703 56015703 G A XKR4 Missense_Mutation p.A219T 0.21 tolerated(0.06) benign(0.05) TCGA-HU-A4GN-01 8 56675290 56675290 T C TMEM68 Missense_Mutation p.K77E 0.10 deleterious(0.01) probably_damaging(0.972) TCGA-HU-A4GN-01 8 61654851 61654851 C T CHD7 Missense_Mutation p.P287L 0.15 possibly_damaging(0.726) TCGA-HU-A4GN-01 8 6371335 6371335 G C ANGPT2 Missense_Mutation p.L355V 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-HU-A4GN-01 8 67488263 67488263 T C MYBL1 Silent p.T483T 0.19 TCGA-HU-A4GN-01 8 67488564 67488564 G T MYBL1 Missense_Mutation p.A383D 0.10 tolerated(0.07) possibly_damaging(0.756) TCGA-HU-A4GN-01 8 75898439 75898439 C T CRISPLD1 Nonsense_Mutation p.R73* 0.11 TCGA-HU-A4GN-01 8 95539493 95539493 C T KIAA1429 Missense_Mutation p.A327T 0.09 tolerated(0.18) benign(0.068) TCGA-HU-A4GN-01 8 95902778 95902778 G T CCNE2 Missense_Mutation p.S106R 0.10 tolerated(0.1) benign(0.005) TCGA-HU-A4GN-01 8 99030292 99030292 G A MATN2 Silent p.T589T 0.05 TCGA-HU-A4GN-01 8 99033533 99033533 T G MATN2 Silent p.A640A 0.07 TCGA-HU-A4GN-01 8 99146739 99146739 G A POP1 Missense_Mutation p.R288H 0.22 tolerated(0.12) benign(0.057) TCGA-HU-A4GN-01 9 100057269 100057269 G A CCDC180 5'UTR 0.20 TCGA-HU-A4GN-01 9 100105645 100105645 A G CCDC180 Silent p.L810L 0.33 TCGA-HU-A4GN-01 9 105767996 105767996 A - CYLC2 3'UTR 0.15 TCGA-HU-A4GN-01 9 111617947 111617947 G A ACTL7B Silent p.D88D 0.28 TCGA-HU-A4GN-01 9 113190032 113190032 C A SVEP1 Missense_Mutation p.Q1938H 0.31 probably_damaging(0.971) TCGA-HU-A4GN-01 9 114332454 114332454 G A PTGR1 Missense_Mutation p.R266C 0.22 deleterious(0.05) benign(0.008) TCGA-HU-A4GN-01 9 116812484 116812484 G T ZNF618 3'UTR 0.18 TCGA-HU-A4GN-01 9 119413907 119413907 C T ASTN2 Missense_Mutation p.R940H 0.11 tolerated(1) unknown(0) TCGA-HU-A4GN-01 9 123165314 123165314 C T CDK5RAP2 Missense_Mutation p.D1693N 0.18 deleterious(0) probably_damaging(0.956) TCGA-HU-A4GN-01 9 123370165 123370165 C T MEGF9 Missense_Mutation p.G404D 0.23 tolerated(0.08) probably_damaging(0.993) TCGA-HU-A4GN-01 9 124906542 124906542 C T NDUFA8 Missense_Mutation p.R166H 0.09 deleterious(0) possibly_damaging(0.861) TCGA-HU-A4GN-01 9 125377119 125377119 T C OR1Q1 Missense_Mutation p.Y35H 0.21 deleterious(0.01) probably_damaging(0.996) TCGA-HU-A4GN-01 9 125618021 125618021 G A RC3H2 Missense_Mutation p.A864V 0.17 tolerated(0.98) probably_damaging(0.956) TCGA-HU-A4GN-01 9 125758824 125758824 T C RABGAP1 Silent p.F347F 0.11 TCGA-HU-A4GN-01 9 126319911 126319911 C T DENND1A Missense_Mutation p.A311T 0.16 deleterious(0) probably_damaging(0.993) TCGA-HU-A4GN-01 9 130111247 130111247 C T GARNL3 Silent p.A492A 0.19 TCGA-HU-A4GN-01 9 130507072 130507072 C A SH2D3C Missense_Mutation p.R524M 0.04 deleterious(0.02) possibly_damaging(0.779) TCGA-HU-A4GN-01 9 131351145 131351145 G A SPTAN1 Missense_Mutation p.D977N 0.12 deleterious(0.01) probably_damaging(0.981) TCGA-HU-A4GN-01 9 131670898 131670898 G A LRRC8A Silent p.A485A 0.17 TCGA-HU-A4GN-01 9 133355118 133355118 T C ASS1 Missense_Mutation p.V235A 0.18 deleterious(0.03) possibly_damaging(0.648) TCGA-HU-A4GN-01 9 135786042 135786042 G T TSC1 Silent p.T393T 0.06 TCGA-HU-A4GN-01 9 137591908 137591908 C T COL5A1 Missense_Mutation p.T144M 0.24 possibly_damaging(0.777) TCGA-HU-A4GN-01 9 137657580 137657580 C T COL5A1 Silent p.P696P 0.22 TCGA-HU-A4GN-01 9 137779299 137779299 A C FCN2 3'UTR 0.33 TCGA-HU-A4GN-01 9 138588520 138588520 G T SOHLH1 Missense_Mutation p.T200K 0.24 tolerated(0.09) probably_damaging(0.941) TCGA-HU-A4GN-01 9 139975224 139975224 G A UAP1L1 Missense_Mutation p.R421H 0.20 deleterious(0) possibly_damaging(0.652) TCGA-HU-A4GN-01 9 140361857 140361857 C T PNPLA7 Missense_Mutation p.G984D 0.23 deleterious(0) probably_damaging(1) TCGA-HU-A4GN-01 9 141016157 141016157 C - CACNA1B Frame_Shift_Del p.L2244Sfs*57 0.18 TCGA-HU-A4GN-01 9 19786765 19786766 - T SLC24A2 Frame_Shift_Ins p.L34Tfs*17 0.18 TCGA-HU-A4GN-01 9 23762085 23762085 T C ELAVL2 Missense_Mutation p.M50V 0.06 tolerated(0.06) possibly_damaging(0.761) TCGA-HU-A4GN-01 9 27036638 27036638 G A IFT74 Intron 0.23 TCGA-HU-A4GN-01 9 32544006 32544006 T C TOPORS Missense_Mutation p.T173A 0.18 tolerated(0.15) benign(0.014) TCGA-HU-A4GN-01 9 35077266 35077266 C T FANCG Missense_Mutation p.R214H 0.16 tolerated(0.19) benign(0.009) TCGA-HU-A4GN-01 9 35547551 35547551 A C RUSC2 Silent p.R345R 0.07 TCGA-HU-A4GN-01 9 35606843 35606843 G - TESK1 Frame_Shift_Del p.T136Hfs*47 0.20 TCGA-HU-A4GN-01 9 35676071 35676071 C A CA9 Silent p.T205T 0.21 TCGA-HU-A4GN-01 9 36217375 36217375 C T GNE Missense_Mutation p.R750H 0.21 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-HU-A4GN-01 9 37489339 37489339 C A POLR1E Silent p.T95T 0.24 TCGA-HU-A4GN-01 9 42368325 42368325 C T ANKRD20A2 5'UTR 0.23 TCGA-HU-A4GN-01 9 71155631 71155631 A G TMEM252 Missense_Mutation p.F34L 0.16 tolerated(0.47) benign(0.016) TCGA-HU-A4GN-01 9 71628985 71628987 CTT - PRKACG In_Frame_Del p.K8del 0.22 TCGA-HU-A4GN-01 9 72067197 72067197 G T APBA1 Silent p.S603S 0.18 TCGA-HU-A4GN-01 9 73002896 73002896 C T KLF9 Nonsense_Mutation p.W177* 0.14 TCGA-HU-A4GN-01 9 79325430 79325430 A G PRUNE2 Missense_Mutation p.L587P 0.10 deleterious(0) probably_damaging(0.959) TCGA-HU-A4GN-01 9 79853105 79853105 G A VPS13A Missense_Mutation p.A595T 0.08 deleterious(0.03) probably_damaging(0.925) TCGA-HU-A4GN-01 9 90321730 90321730 C T DAPK1 Silent p.P1248P 0.23 TCGA-HU-A4GN-01 9 92003641 92003641 G A SEMA4D Silent p.H339H 0.20 TCGA-HU-A4GN-01 9 94493365 94493365 C T ROR2 Missense_Mutation p.C337Y 0.17 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GN-01 9 97062695 97062695 G - ZNF169 Frame_Shift_Del p.E287Rfs*45 0.10 TCGA-HU-A4GN-01 9 990661 990661 C T DMRT3 Nonsense_Mutation p.Q359* 0.13 TCGA-HU-A4GN-01 9 99284796 99284796 A G CDC14B Silent p.I445I 0.23 TCGA-HU-A4GN-01 X 100277016 100277016 T A TRMT2B Missense_Mutation p.E264D 0.31 tolerated(0.32) benign(0.004) TCGA-HU-A4GN-01 X 100667763 100667763 G A HNRNPH2 Missense_Mutation p.D263N 0.49 tolerated(0.26) benign(0.1) TCGA-HU-A4GN-01 X 10188763 10188763 C - CLCN4 Frame_Shift_Del p.E682Sfs*10 0.29 TCGA-HU-A4GN-01 X 102192227 102192228 - G RAB40AL 5'UTR 0.38 TCGA-HU-A4GN-01 X 102192725 102192725 A T RAB40AL Missense_Mutation p.N160I 0.42 deleterious(0) probably_damaging(0.932) TCGA-HU-A4GN-01 X 102632690 102632690 C T NGFRAP1 Missense_Mutation p.R91C 0.24 tolerated(0.08) benign(0.001) TCGA-HU-A4GN-01 X 103080031 103080031 G A RAB9B 3'UTR 0.09 TCGA-HU-A4GN-01 X 107867547 107867547 G A COL4A5 Missense_Mutation p.G1000E 0.18 unknown(0) TCGA-HU-A4GN-01 X 128615070 128615070 G A SMARCA1 Silent p.S770S 0.15 TCGA-HU-A4GN-01 X 128975838 128975838 G A ZDHHC9 Silent p.R28R 0.31 TCGA-HU-A4GN-01 X 135631047 135631047 C A VGLL1 Missense_Mutation p.L172I 0.48 tolerated(0.06) benign(0.018) TCGA-HU-A4GN-01 X 137714975 137714975 G T FGF13 3'Flank 0.33 TCGA-HU-A4GN-01 X 138643010 138643010 C T F9 Silent p.V278V 0.27 TCGA-HU-A4GN-01 X 138678778 138678779 - A MCF2 Frame_Shift_Ins p.C812Lfs*6 0.37 TCGA-HU-A4GN-01 X 1413263 1413263 C T CSF2RA Missense_Mutation p.T230M 0.12 tolerated(0.09) benign(0.247) TCGA-HU-A4GN-01 X 1506203 1506203 C T SLC25A6 Silent p.R236R 0.26 TCGA-HU-A4GN-01 X 151283727 151283727 T C RP11-1007I13.4 RNA 0.33 TCGA-HU-A4GN-01 X 152858040 152858040 G A FAM58A Missense_Mutation p.A192V 0.48 deleterious(0.03) benign(0.121) TCGA-HU-A4GN-01 X 153220523 153220523 G A HCFC1 Silent p.C1109C 0.30 TCGA-HU-A4GN-01 X 15613095 15613095 A - ACE2 Frame_Shift_Del p.L73* 0.12 TCGA-HU-A4GN-01 X 1734120 1734120 C T ASMT Missense_Mutation p.R10C 0.19 deleterious(0) probably_damaging(0.921) TCGA-HU-A4GN-01 X 215824 215824 C T PLCXD1 Missense_Mutation p.P265L 0.13 tolerated(0.13) benign(0.031) TCGA-HU-A4GN-01 X 24512887 24512888 AT - PDK3 Frame_Shift_Del p.M47Vfs*12 0.18 TCGA-HU-A4GN-01 X 24593350 24593350 T C PCYT1B Missense_Mutation p.N265S 0.24 tolerated(0.49) benign(0.002) TCGA-HU-A4GN-01 X 27839447 27839447 A G MAGEB10 Silent p.K8K 0.12 TCGA-HU-A4GN-01 X 2998955 2998955 C T ARSF Missense_Mutation p.R103C 0.51 tolerated(0.05) possibly_damaging(0.683) TCGA-HU-A4GN-01 X 47509930 47509930 G A ELK1 5'Flank 0.54 TCGA-HU-A4GN-01 X 54491964 54491964 C T FGD1 Missense_Mutation p.R519H 0.40 deleterious(0) probably_damaging(0.997) TCGA-HU-A4GN-01 X 54964064 54964064 G A PFKFB1 Missense_Mutation p.R398W 0.48 probably_damaging(1) TCGA-HU-A4GN-01 X 5821684 5821684 G A NLGN4X Silent p.D345D 0.12 TCGA-HU-A4GN-01 X 62570234 62570234 G T SPIN4 Silent p.T155T 0.56 TCGA-HU-A4GN-01 X 62893974 62893974 G A ARHGEF9 Missense_Mutation p.R290C 0.10 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GN-01 X 65822496 65822496 A C EDA2R Missense_Mutation p.F166V 0.46 deleterious(0.01) possibly_damaging(0.775) TCGA-HU-A4GN-01 X 68059551 68059551 G A EFNB1 Missense_Mutation p.G151S 0.26 deleterious(0) probably_damaging(1) TCGA-HU-A4GN-01 X 70127618 70127618 A - TEX11 5'UTR 0.58 TCGA-HU-A4GN-01 X 72667577 72667577 C T CDX4 Missense_Mutation p.T163M 0.30 deleterious(0.01) probably_damaging(0.928) TCGA-HU-A4GN-01 X 73061420 73061420 C A XIST RNA 0.50 TCGA-HU-A4GN-01 X 73071163 73071163 A G XIST RNA 0.45 TCGA-HU-A4GN-01 Y 16941970 16941970 C T NLGN4Y Missense_Mutation p.T391M 0.45 tolerated(0.05) possibly_damaging(0.586) TCGA-HU-A4GN-01 Y 4967202 4967202 G T PCDH11Y Missense_Mutation p.G528V 0.20 deleterious(0) probably_damaging(0.993) TCGA-HU-A4GP-01 10 108923844 108923844 C T SORCS1 Silent p.P147P 0.52 TCGA-HU-A4GP-01 10 11505340 11505340 G A USP6NL Silent p.N546N 0.27 TCGA-HU-A4GP-01 10 117075045 117075045 T C ATRNL1 Silent p.L946L 0.26 TCGA-HU-A4GP-01 10 118196292 118196292 C T PNLIPRP3 Missense_Mutation p.T40I 0.35 deleterious(0.01) benign(0.138) TCGA-HU-A4GP-01 10 121652327 121652327 C T SEC23IP Silent p.G11G 0.14 TCGA-HU-A4GP-01 10 124390531 124390531 G A DMBT1 Missense_Mutation p.R1898H 0.36 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GP-01 10 129536928 129536928 C T FOXI2 Missense_Mutation p.A219V 0.50 tolerated(0.39) benign(0.007) TCGA-HU-A4GP-01 10 28347495 28347495 C T MPP7 Missense_Mutation p.G446S 0.34 deleterious(0) probably_damaging(1) TCGA-HU-A4GP-01 10 48389994 48389994 G A RBP3 Missense_Mutation p.T295M 0.55 deleterious(0.02) probably_damaging(0.998) TCGA-HU-A4GP-01 10 54074279 54074279 G T DKK1 Missense_Mutation p.V29L 0.07 tolerated(0.45) benign(0.016) TCGA-HU-A4GP-01 10 99196963 99196963 C T EXOSC1 Missense_Mutation p.A156T 0.06 deleterious(0) possibly_damaging(0.802) TCGA-HU-A4GP-01 11 104825729 104825729 C T CASP4 Splice_Site p.X3_splice 0.11 TCGA-HU-A4GP-01 11 111835363 111835363 C T DIXDC1 Missense_Mutation p.R51W 0.55 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GP-01 11 113270344 113270344 G C ANKK1 Silent p.A551A 0.36 TCGA-HU-A4GP-01 11 113270418 113270418 G T ANKK1 Missense_Mutation p.C576F 0.29 tolerated(0.08) benign(0.35) TCGA-HU-A4GP-01 11 119216153 119216153 A T MFRP Silent p.P206P 0.28 TCGA-HU-A4GP-01 11 123596704 123596704 G A ZNF202 3'UTR 0.10 TCGA-HU-A4GP-01 11 123676313 123676313 G T OR6M1 Missense_Mutation p.H249N 0.13 deleterious(0) benign(0.013) TCGA-HU-A4GP-01 11 126277484 126277484 G A ST3GAL4 Missense_Mutation p.R99Q 0.29 tolerated(0.09) benign(0.225) TCGA-HU-A4GP-01 11 128840133 128840133 G A ARHGAP32 Missense_Mutation p.R1645W 0.08 deleterious(0) probably_damaging(0.997) TCGA-HU-A4GP-01 11 132177584 132177584 G A NTM Silent p.A176A 0.49 TCGA-HU-A4GP-01 11 24518846 24518846 C T LUZP2 Silent p.S19S 0.37 TCGA-HU-A4GP-01 11 45671632 45671632 T G CHST1 Missense_Mutation p.N281T 0.07 tolerated(0.62) benign(0.01) TCGA-HU-A4GP-01 11 4598936 4598936 C A C11orf40 Missense_Mutation p.V39F 0.06 deleterious_low_confidence(0.04) possibly_damaging(0.607) TCGA-HU-A4GP-01 11 4870119 4870119 A T OR51S1 Missense_Mutation p.L107Q 0.08 deleterious(0.01) probably_damaging(0.984) TCGA-HU-A4GP-01 11 5537086 5537086 A G UBQLNL Missense_Mutation p.S196P 0.27 tolerated(0.26) benign(0.016) TCGA-HU-A4GP-01 11 55371655 55371655 G C OR4C11 Silent p.S65S 0.69 TCGA-HU-A4GP-01 11 55563243 55563243 T G OR5D14 Missense_Mutation p.V71G 0.33 deleterious(0) possibly_damaging(0.781) TCGA-HU-A4GP-01 11 56086292 56086292 C A OR8K3 Silent p.G170G 0.07 TCGA-HU-A4GP-01 11 56086642 56086642 T C OR8K3 Missense_Mutation p.L287S 0.46 deleterious_low_confidence(0) possibly_damaging(0.886) TCGA-HU-A4GP-01 11 57995417 57995417 T A OR10Q1 Missense_Mutation p.I311F 0.12 tolerated(0.17) benign(0.001) TCGA-HU-A4GP-01 11 5906247 5906247 G T OR52E4 Missense_Mutation p.C242F 0.04 deleterious(0.01) probably_damaging(0.961) TCGA-HU-A4GP-01 11 59622291 59622291 C T TCN1 Missense_Mutation p.A319T 0.06 tolerated(1) benign(0.001) TCGA-HU-A4GP-01 11 6007738 6007738 A G OR52L1 Silent p.Y141Y 0.09 TCGA-HU-A4GP-01 11 62010904 62010904 G A SCGB1D2 Missense_Mutation p.D67N 0.34 tolerated(0.19) possibly_damaging(0.571) TCGA-HU-A4GP-01 11 62559843 62559843 C A NXF1 3'UTR 0.08 TCGA-HU-A4GP-01 11 67269440 67269440 C T PITPNM1 Missense_Mutation p.R178Q 0.06 tolerated(0.36) benign(0.002) TCGA-HU-A4GP-01 12 115112484 115112484 G A TBX3 Missense_Mutation p.A419V 0.18 tolerated(0.3) benign(0.001) TCGA-HU-A4GP-01 12 21919302 21919302 G T KCNJ8 Missense_Mutation p.F210L 0.38 tolerated(0.12) benign(0.05) TCGA-HU-A4GP-01 12 24736551 24736551 A T LINC00477 RNA 0.34 TCGA-HU-A4GP-01 12 26868257 26868257 C A ITPR2 Missense_Mutation p.S277I 0.10 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GP-01 12 30867934 30867934 C G CAPRIN2 Missense_Mutation p.R820T 0.27 deleterious(0) probably_damaging(0.928) TCGA-HU-A4GP-01 12 50498370 50498370 G A GPD1 Missense_Mutation p.A19T 0.10 deleterious(0.01) probably_damaging(0.978) TCGA-HU-A4GP-01 12 72866849 72866849 G T TRHDE Missense_Mutation p.W446C 0.07 deleterious(0) probably_damaging(0.937) TCGA-HU-A4GP-01 12 7531675 7531675 G T CD163L1 Missense_Mutation p.S757Y 0.44 tolerated(1) probably_damaging(0.937) TCGA-HU-A4GP-01 13 101833399 101833399 G T NALCN Intron 0.08 TCGA-HU-A4GP-01 13 36049843 36049843 A T MAB21L1 Missense_Mutation p.Y145N 0.41 deleterious(0.01) probably_damaging(0.981) TCGA-HU-A4GP-01 14 36987124 36987124 C T NKX2-1 Missense_Mutation p.A189T 0.33 tolerated(0.39) benign(0.008) TCGA-HU-A4GP-01 14 80164096 80164096 C T NRXN3 Missense_Mutation p.A874V 0.14 deleterious(0) benign(0.001) TCGA-HU-A4GP-01 14 94754794 94754794 T G SERPINA10 Missense_Mutation p.K274T 0.32 tolerated(0.09) benign(0.289) TCGA-HU-A4GP-01 15 23811299 23811299 C T MKRN3 Missense_Mutation p.R124W 0.34 tolerated(0.16) benign(0.013) TCGA-HU-A4GP-01 15 24921898 24921898 C T NPAP1 Missense_Mutation p.P295L 0.06 tolerated(0.26) benign(0.001) TCGA-HU-A4GP-01 15 42855984 42855984 A G HAUS2 Missense_Mutation p.I143V 0.09 tolerated(0.06) possibly_damaging(0.793) TCGA-HU-A4GP-01 15 43018353 43018353 C A CDAN1 Silent p.L1070L 0.10 TCGA-HU-A4GP-01 15 44085229 44085229 G C SERF2 Missense_Mutation p.V22L 0.24 tolerated_low_confidence(0.36) benign(0.299) TCGA-HU-A4GP-01 15 51350609 51350609 C T TNFAIP8L3 Silent p.A116A 0.51 TCGA-HU-A4GP-01 15 51773769 51773769 C T DMXL2 Missense_Mutation p.R1845Q 0.19 deleterious(0) possibly_damaging(0.821) TCGA-HU-A4GP-01 15 54307481 54307481 T C UNC13C Missense_Mutation p.F794S 0.30 deleterious_low_confidence(0.04) probably_damaging(0.997) TCGA-HU-A4GP-01 15 72190282 72190283 TC - MYO9A Frame_Shift_Del p.D1521Yfs*13 0.25 TCGA-HU-A4GP-01 15 91432815 91432815 A G FES Missense_Mutation p.E292G 0.04 tolerated(0.08) benign(0.04) TCGA-HU-A4GP-01 16 1270395 1270395 C T CACNA1H Missense_Mutation p.R2155W 0.30 tolerated(0.05) benign(0.002) TCGA-HU-A4GP-01 16 23546255 23546255 G A EARS2 Silent p.P304P 0.32 TCGA-HU-A4GP-01 16 24372925 24372925 G A CACNG3 Missense_Mutation p.R230Q 0.24 tolerated(0.13) probably_damaging(0.998) TCGA-HU-A4GP-01 16 28847923 28847923 C T ATXN2L Intron 0.38 TCGA-HU-A4GP-01 16 29982737 29982737 G T TMEM219 Silent p.L198L 0.13 TCGA-HU-A4GP-01 16 51174933 51174933 C T SALL1 Silent p.S400S 0.61 TCGA-HU-A4GP-01 16 824881 824881 C T MSLNL Missense_Mutation p.R564H 0.35 benign(0.009) TCGA-HU-A4GP-01 16 89254540 89254540 A G CDH15 Silent p.G275G 0.64 TCGA-HU-A4GP-01 17 33690124 33690124 C T SLFN11 Missense_Mutation p.V235I 0.33 tolerated(0.56) benign(0.009) TCGA-HU-A4GP-01 17 34894027 34894027 A G PIGW Silent p.V359V 0.07 TCGA-HU-A4GP-01 17 37829014 37829014 C T PGAP3 3'UTR 0.19 TCGA-HU-A4GP-01 17 37863240 37863240 C T ERBB2 Intron 0.20 TCGA-HU-A4GP-01 17 39671632 39671632 G A KRT15 Intron 0.20 TCGA-HU-A4GP-01 17 42478621 42478622 GC - GPATCH8 Frame_Shift_Del p.A275Sfs*13 0.28 TCGA-HU-A4GP-01 17 42636253 42636253 C T FZD2 Silent p.S399S 0.38 TCGA-HU-A4GP-01 17 45736015 45736015 T G KPNB1 Missense_Mutation p.F209V 0.05 deleterious(0) probably_damaging(0.982) TCGA-HU-A4GP-01 17 45924989 45924989 C T SP6 Silent p.S269S 0.12 TCGA-HU-A4GP-01 17 56589814 56589814 G A MTMR4 Silent p.A49A 0.34 TCGA-HU-A4GP-01 17 56700326 56700326 C T TEX14 Missense_Mutation p.G100D 0.16 deleterious(0) probably_damaging(0.99) TCGA-HU-A4GP-01 17 6674284 6674284 C T XAF1 Missense_Mutation p.P277L 0.12 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GP-01 17 7577082 7577082 C T TP53 Missense_Mutation p.E286K 0.52 deleterious(0) probably_damaging(0.982) TCGA-HU-A4GP-01 18 65181975 65181975 G A DSEL 5'UTR 0.48 TCGA-HU-A4GP-01 19 14677059 14677059 C T NDUFB7 Silent p.K100K 0.12 TCGA-HU-A4GP-01 19 1820356 1820356 G T REXO1 Silent p.G811G 0.33 TCGA-HU-A4GP-01 19 23836362 23836362 C T ZNF675 Missense_Mutation p.G458D 0.42 deleterious(0.02) probably_damaging(1) TCGA-HU-A4GP-01 19 2918038 2918038 G C ZNF57 Missense_Mutation p.E473D 0.13 tolerated(0.07) probably_damaging(0.983) TCGA-HU-A4GP-01 19 34991055 34991055 G A WTIP Missense_Mutation p.G392R 0.14 deleterious(0) probably_damaging(0.988) TCGA-HU-A4GP-01 19 36276129 36276129 G C ARHGAP33 Missense_Mutation p.G587A 0.14 tolerated_low_confidence(0.19) possibly_damaging(0.899) TCGA-HU-A4GP-01 19 37975729 37975729 C A ZNF570 Missense_Mutation p.A402D 0.45 tolerated(0.06) probably_damaging(0.996) TCGA-HU-A4GP-01 19 47422058 47422058 C T ARHGAP35 Silent p.F42F 0.08 TCGA-HU-A4GP-01 19 49183957 49183957 C T RN7SL345P 5'Flank 0.40 TCGA-HU-A4GP-01 19 51561916 51561916 G C KLK13 Missense_Mutation p.T175S 0.03 tolerated(0.11) possibly_damaging(0.467) TCGA-HU-A4GP-01 19 5668381 5668381 T C SAFB 3'Flank 0.25 TCGA-HU-A4GP-01 19 57088170 57088170 C A ZNF470 Missense_Mutation p.L125I 0.05 tolerated(0.45) benign(0.175) TCGA-HU-A4GP-01 19 57326846 57326846 C A PEG3 Missense_Mutation p.Q988H 0.21 deleterious(0.01) probably_damaging(0.99) TCGA-HU-A4GP-01 19 57955724 57955724 T A ZNF749 Missense_Mutation p.V403D 0.07 deleterious(0.04) probably_damaging(0.942) TCGA-HU-A4GP-01 19 7132175 7132175 C T INSR Missense_Mutation p.D946N 0.20 tolerated(0.21) benign(0.003) TCGA-HU-A4GP-01 19 758149 758149 G A MISP Silent p.P401P 0.52 TCGA-HU-A4GP-01 19 9071717 9071717 C T MUC16 Silent p.V5243V 0.21 TCGA-HU-A4GP-01 1 103453255 103453255 A C COL11A1 Silent p.P812P 0.08 TCGA-HU-A4GP-01 1 103478004 103478004 C A COL11A1 Missense_Mutation p.G532C 0.06 probably_damaging(1) TCGA-HU-A4GP-01 1 10509972 10509972 C T CORT 5'UTR 0.11 TCGA-HU-A4GP-01 1 1235945 1235945 C A ACAP3 Missense_Mutation p.A156S 0.29 tolerated(0.29) benign(0.03) TCGA-HU-A4GP-01 1 12853478 12853478 G T PRAMEF1 Silent p.V34V 0.41 TCGA-HU-A4GP-01 1 12920109 12920109 C T PRAMEF2 Silent p.H283H 0.08 TCGA-HU-A4GP-01 1 12920128 12920128 T C PRAMEF2 Splice_Site p.X289_splice 0.07 TCGA-HU-A4GP-01 1 152595412 152595412 C T LCE3A Silent p.R56R 0.48 TCGA-HU-A4GP-01 1 154437709 154437709 C T IL6R Silent p.P420P 0.32 TCGA-HU-A4GP-01 1 157803062 157803062 T A CD5L Missense_Mutation p.Q320L 0.33 tolerated(0.35) benign(0.015) TCGA-HU-A4GP-01 1 165533033 165533033 C A LRRC52 Nonsense_Mutation p.S305* 0.06 TCGA-HU-A4GP-01 1 169096600 169096600 C T ATP1B1 Missense_Mutation p.P174L 0.43 deleterious(0) probably_damaging(1) TCGA-HU-A4GP-01 1 198687382 198687382 G T PTPRC Missense_Mutation p.C537F 0.12 deleterious(0) probably_damaging(0.945) TCGA-HU-A4GP-01 1 200567489 200567489 C T KIF14 Missense_Mutation p.D809N 0.46 deleterious(0) probably_damaging(1) TCGA-HU-A4GP-01 1 203134855 203134855 A C ADORA1 Missense_Mutation p.T270P 0.37 deleterious(0) benign(0.166) TCGA-HU-A4GP-01 1 220835358 220835358 C T MARK1 Silent p.D746D 0.67 TCGA-HU-A4GP-01 1 228432152 228432152 G T OBSCN Missense_Mutation p.G1213C 0.14 benign(0.013) TCGA-HU-A4GP-01 1 235973152 235973152 C A LYST Missense_Mutation p.L322F 0.09 tolerated(0.08) probably_damaging(0.996) TCGA-HU-A4GP-01 1 237947996 237947996 A G RYR2 Silent p.A4328A 0.08 TCGA-HU-A4GP-01 1 35563024 35563025 - A ZMYM1 Frame_Shift_Ins p.I95Nfs*26 0.37 TCGA-HU-A4GP-01 1 50659454 50659454 G A ELAVL4 Silent p.P141P 0.37 TCGA-HU-A4GP-01 1 53544373 53544373 C T PODN Silent p.R445R 0.42 TCGA-HU-A4GP-01 1 66085680 66085680 C A LEPR Missense_Mutation p.P822Q 0.13 deleterious(0) probably_damaging(0.989) TCGA-HU-A4GP-01 1 71418492 71418492 T C PTGER3 3'UTR 0.11 TCGA-HU-A4GP-01 1 89523769 89523769 G T GBP1 Silent p.P260P 0.10 TCGA-HU-A4GP-01 1 9063464 9063464 G A SLC2A7 Silent p.N478N 0.06 TCGA-HU-A4GP-01 1 92949026 92949026 C T GFI1 Missense_Mutation p.V7I 0.33 deleterious(0) benign(0.433) TCGA-HU-A4GP-01 1 978821 978821 G A AGRN Silent p.A529A 0.38 TCGA-HU-A4GP-01 20 1558984 1558984 C T RP4-576H24.4 Missense_Mutation p.G144R 0.15 tolerated(0.06) possibly_damaging(0.856) TCGA-HU-A4GP-01 20 17622545 17622546 - GGTC RRBP1 Frame_Shift_Ins p.P261Rfs*157 0.25 TCGA-HU-A4GP-01 20 41101196 41101196 A C PTPRT Missense_Mutation p.V387G 0.62 deleterious(0.02) benign(0.06) TCGA-HU-A4GP-01 20 44665965 44665965 T A SLC12A5 Missense_Mutation p.Y208N 0.33 deleterious(0) probably_damaging(0.996) TCGA-HU-A4GP-01 20 56886153 56886153 G T RAB22A Missense_Mutation p.D31Y 0.41 tolerated(1) benign(0.31) TCGA-HU-A4GP-01 21 10941929 10941929 A C TPTE Silent p.S258S 0.14 TCGA-HU-A4GP-01 21 10941963 10941963 A C TPTE Missense_Mutation p.I247S 0.11 deleterious(0) probably_damaging(0.996) TCGA-HU-A4GP-01 21 45390565 45390565 C T AGPAT3 Missense_Mutation p.T181M 0.12 deleterious(0) probably_damaging(0.993) TCGA-HU-A4GP-01 21 47545973 47545973 C T COL6A2 Silent p.C748C 0.08 TCGA-HU-A4GP-01 21 47552310 47552310 C T COL6A2 Silent p.N968N 0.50 TCGA-HU-A4GP-01 22 40417654 40417654 G A FAM83F Silent p.T380T 0.21 TCGA-HU-A4GP-01 22 47274558 47274558 G A TBC1D22A Missense_Mutation p.R216Q 0.07 deleterious(0.03) benign(0.226) TCGA-HU-A4GP-01 2 107446646 107446646 A G ST6GAL2 Silent p.R398R 0.04 TCGA-HU-A4GP-01 2 114500332 114500332 C G SLC35F5 Silent p.L229L 0.07 TCGA-HU-A4GP-01 2 114699799 114699799 G T ACTR3 Nonsense_Mutation p.E241* 0.32 TCGA-HU-A4GP-01 2 128044384 128044384 G T ERCC3 Missense_Mutation p.L413M 0.33 deleterious(0.03) benign(0.14) TCGA-HU-A4GP-01 2 131976470 131976470 C T POTEE Silent p.D165D 0.23 TCGA-HU-A4GP-01 2 137814225 137814225 G T THSD7B Missense_Mutation p.K125N 0.10 tolerated(0.11) possibly_damaging(0.504) TCGA-HU-A4GP-01 2 166003266 166003267 - T SCN3A Frame_Shift_Ins p.F552Ifs*22 0.24 TCGA-HU-A4GP-01 2 168104063 168104063 A C XIRP2 Missense_Mutation p.N2054T 0.29 possibly_damaging(0.888) TCGA-HU-A4GP-01 2 170366712 170366712 G A KLHL41 Missense_Mutation p.G142R 0.06 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GP-01 2 198263275 198263275 T C SF3B1 Missense_Mutation p.D1015G 0.07 deleterious(0) probably_damaging(0.938) TCGA-HU-A4GP-01 2 216964986 216964986 G A TMEM169 Silent p.S205S 0.32 TCGA-HU-A4GP-01 2 227886829 227886829 G A COL4A4 Missense_Mutation p.A1384V 0.06 unknown(0) TCGA-HU-A4GP-01 2 238287440 238287440 C A COL6A3 Missense_Mutation p.S779I 0.12 probably_damaging(0.943) TCGA-HU-A4GP-01 2 3691470 3691470 T A COLEC11 Missense_Mutation p.L207Q 0.07 deleterious(0) probably_damaging(0.921) TCGA-HU-A4GP-01 2 55254236 55254236 C T RTN4 Silent p.K333K 0.06 TCGA-HU-A4GP-01 2 56419955 56419955 T A CCDC85A Missense_Mutation p.V207E 0.11 deleterious(0.03) probably_damaging(0.999) TCGA-HU-A4GP-01 2 69702968 69702968 G A AAK1 3'UTR 0.18 TCGA-HU-A4GP-01 2 95719205 95719205 G A MAL 3'UTR 0.14 TCGA-HU-A4GP-01 3 134670563 134670563 A T EPHB1 Silent p.V158V 0.09 TCGA-HU-A4GP-01 3 147128842 147128842 C T ZIC1 Missense_Mutation p.R315C 0.34 deleterious(0) probably_damaging(0.987) TCGA-HU-A4GP-01 3 178560462 178560462 G A KCNMB2 Missense_Mutation p.G149R 0.41 tolerated(0.74) possibly_damaging(0.903) TCGA-HU-A4GP-01 3 183660618 183660618 G A ABCC5 Silent p.N1197N 0.39 TCGA-HU-A4GP-01 3 185195129 185195129 T A MAP3K13 Missense_Mutation p.S816T 0.32 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-HU-A4GP-01 3 195492218 195492218 C G MUC4 Missense_Mutation p.W4574S 0.31 benign(0.288) TCGA-HU-A4GP-01 3 49049539 49049539 C T WDR6 Missense_Mutation p.T221I 0.35 tolerated(0.19) benign(0.029) TCGA-HU-A4GP-01 3 51749890 51749890 G A GRM2 Missense_Mutation p.E701K 0.33 deleterious(0.05) possibly_damaging(0.836) TCGA-HU-A4GP-01 3 52257833 52257833 G T TLR9 Missense_Mutation p.H321N 0.13 tolerated(0.39) benign(0.211) TCGA-HU-A4GP-01 3 74344358 74344358 C A CNTN3 Missense_Mutation p.A811S 0.24 deleterious(0.03) possibly_damaging(0.814) TCGA-HU-A4GP-01 3 7456772 7456772 G A GRM7 Missense_Mutation p.E366K 0.50 deleterious(0) probably_damaging(0.995) TCGA-HU-A4GP-01 4 119461400 119461400 C T CEP170P1 RNA 0.11 TCGA-HU-A4GP-01 4 126237908 126237908 G A FAT4 Silent p.A114A 0.34 TCGA-HU-A4GP-01 4 139994712 139994712 G A ELF2 Missense_Mutation p.S83L 0.49 deleterious(0) probably_damaging(0.925) TCGA-HU-A4GP-01 4 143114264 143114264 T C INPP4B Missense_Mutation p.H386R 0.05 tolerated(0.31) benign(0.015) TCGA-HU-A4GP-01 4 155719267 155719267 G T RBM46 Missense_Mutation p.K152N 0.21 deleterious(0) probably_damaging(0.997) TCGA-HU-A4GP-01 4 162307121 162307121 C A FSTL5 Silent p.G774G 0.27 TCGA-HU-A4GP-01 4 166021837 166021837 A G TMEM192 Silent p.L128L 0.34 TCGA-HU-A4GP-01 4 187541092 187541092 G T FAT1 Nonsense_Mutation p.Y2216* 0.37 TCGA-HU-A4GP-01 4 20255363 20255363 A T SLIT2 5'UTR 0.38 TCGA-HU-A4GP-01 4 3240697 3240697 C T HTT Silent p.V3069V 0.46 TCGA-HU-A4GP-01 4 44176772 44176772 A T KCTD8 3'UTR 0.47 TCGA-HU-A4GP-01 4 47405587 47405587 C T GABRB1 Nonsense_Mutation p.R232* 0.08 TCGA-HU-A4GP-01 4 88767774 88767774 A T MEPE 3'UTR 0.50 TCGA-HU-A4GP-01 4 96470056 96470056 G A UNC5C 5'UTR 0.26 TCGA-HU-A4GP-01 5 114473223 114473223 C T TRIM36 Missense_Mutation p.A320T 0.22 deleterious(0.02) benign(0.242) TCGA-HU-A4GP-01 5 134785360 134785360 C T TIFAB Silent p.T90T 0.11 TCGA-HU-A4GP-01 5 140249772 140249772 G A PCDHA11 Missense_Mutation p.A362T 0.58 tolerated_low_confidence(0.1) benign(0.173) TCGA-HU-A4GP-01 5 140249918 140249918 C T PCDHA11 Silent p.S410S 0.61 TCGA-HU-A4GP-01 5 140711893 140711893 C A PCDHGA1 Missense_Mutation p.L548I 0.05 deleterious_low_confidence(0.02) benign(0.344) TCGA-HU-A4GP-01 5 140720422 140720422 G A PCDHGA2 Silent p.T628T 0.43 TCGA-HU-A4GP-01 5 140811189 140811189 C T PCDHGA12 Missense_Mutation p.A288V 0.07 tolerated_low_confidence(0.37) benign(0.048) TCGA-HU-A4GP-01 5 148411175 148411175 C A SH3TC2 Missense_Mutation p.E359D 0.29 tolerated(0.54) benign(0.003) TCGA-HU-A4GP-01 5 148748236 148748236 G A PCYOX1L 3'UTR 0.27 TCGA-HU-A4GP-01 5 152870498 152870498 T C GRIA1 5'Flank 0.15 TCGA-HU-A4GP-01 5 158223440 158223440 C T EBF1 Silent p.T274T 0.14 TCGA-HU-A4GP-01 5 161324161 161324161 C T GABRA1 Silent p.Y368Y 0.44 TCGA-HU-A4GP-01 5 19838884 19838884 G A CDH18 Missense_Mutation p.P71L 0.18 deleterious(0.02) possibly_damaging(0.641) TCGA-HU-A4GP-01 5 52386527 52386527 C G ITGA2 3'UTR 0.43 TCGA-HU-A4GP-01 5 56526984 56526984 A G GPBP1 Missense_Mutation p.N90D 0.06 tolerated(0.36) probably_damaging(0.981) TCGA-HU-A4GP-01 5 81474361 81474361 T A ATG10 Nonsense_Mutation p.Y136* 0.21 TCGA-HU-A4GP-01 5 82835937 82835937 G T VCAN Missense_Mutation p.S2372I 0.44 tolerated(0.39) benign(0.359) TCGA-HU-A4GP-01 5 82837419 82837419 A T VCAN Missense_Mutation p.K2866M 0.08 deleterious(0) possibly_damaging(0.885) TCGA-HU-A4GP-01 5 94857966 94857966 C A TTC37 Missense_Mutation p.W601C 0.27 deleterious(0) probably_damaging(1) TCGA-HU-A4GP-01 6 116892656 116892656 C A RWDD1 5'UTR 0.38 TCGA-HU-A4GP-01 6 130763125 130763125 T C TMEM200A 3'UTR 0.33 TCGA-HU-A4GP-01 6 143095414 143095415 - T HIVEP2 Frame_Shift_Ins p.I155Dfs*9 0.20 TCGA-HU-A4GP-01 6 145124231 145124231 G A UTRN Missense_Mutation p.R3102Q 0.18 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GP-01 6 26123973 26123973 C A HIST1H2BC Missense_Mutation p.G54C 0.04 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-HU-A4GP-01 6 26468153 26468153 T G BTN2A1 Intron 0.13 TCGA-HU-A4GP-01 6 28121579 28121579 A G ZKSCAN8 Silent p.E507E 0.12 TCGA-HU-A4GP-01 6 29365024 29365024 T C OR12D2 Missense_Mutation p.L183P 0.13 deleterious(0) probably_damaging(1) TCGA-HU-A4GP-01 6 32159232 32159232 C T GPSM3 Missense_Mutation p.G132R 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-HU-A4GP-01 6 33374045 33374045 C T KIFC1 Missense_Mutation p.R537C 0.11 deleterious(0) probably_damaging(0.979) TCGA-HU-A4GP-01 6 38899592 38899592 A G DNAH8 Silent p.K3543K 0.39 TCGA-HU-A4GP-01 6 39869752 39869752 G A DAAM2 Missense_Mutation p.R1049Q 0.12 tolerated(0.11) probably_damaging(0.99) TCGA-HU-A4GP-01 6 42941748 42941748 G A PEX6 Silent p.L375L 0.32 TCGA-HU-A4GP-01 6 7182219 7182219 G A RREB1 Missense_Mutation p.M25I 0.15 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GP-01 6 75798837 75798837 G T COL12A1 Missense_Mutation p.L2999M 0.26 benign(0.419) TCGA-HU-A4GP-01 6 88376828 88376828 G A ORC3 Nonsense_Mutation p.W709* 0.48 TCGA-HU-A4GP-01 7 100816771 100816771 C G NAT16 Missense_Mutation p.A115P 0.33 tolerated(0.29) benign(0.001) TCGA-HU-A4GP-01 7 104909363 104909363 T A SRPK2 Intron 0.26 TCGA-HU-A4GP-01 7 113519479 113519479 T C PPP1R3A Silent p.G556G 0.30 TCGA-HU-A4GP-01 7 1197307 1197307 C T ZFAND2A Silent p.P45P 0.36 TCGA-HU-A4GP-01 7 138522741 138522741 G C KIAA1549 Silent p.G1921G 0.08 TCGA-HU-A4GP-01 7 142983557 142983557 G A TMEM139 Missense_Mutation p.V96M 0.08 tolerated(0.14) benign(0) TCGA-HU-A4GP-01 7 151835972 151835972 C T KMT2C Missense_Mutation p.C4851Y 0.08 probably_damaging(1) TCGA-HU-A4GP-01 7 19184535 19184535 A G FERD3L Missense_Mutation p.S151P 0.09 deleterious(0) probably_damaging(0.979) TCGA-HU-A4GP-01 7 20698214 20698214 G A ABCB5 Missense_Mutation p.R541Q 0.12 deleterious(0) possibly_damaging(0.875) TCGA-HU-A4GP-01 7 23556109 23556109 C T TRA2A Missense_Mutation p.R70Q 0.10 deleterious(0.01) benign(0.238) TCGA-HU-A4GP-01 7 34182863 34182863 T C BMPER Silent p.C589C 0.06 TCGA-HU-A4GP-01 7 36934570 36934570 C G ELMO1 Missense_Mutation p.S497T 0.14 tolerated(1) benign(0.066) TCGA-HU-A4GP-01 7 4008964 4008964 C T SDK1 Missense_Mutation p.A541V 0.28 deleterious(0.02) benign(0.009) TCGA-HU-A4GP-01 7 42007505 42007505 G C GLI3 Missense_Mutation p.P707R 0.11 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GP-01 7 42007506 42007506 G T GLI3 Missense_Mutation p.P707T 0.10 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GP-01 7 44323802 44323802 G A CAMK2B Missense_Mutation p.R30C 0.32 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-HU-A4GP-01 7 53104324 53104324 G C POM121L12 3'UTR 0.10 TCGA-HU-A4GP-01 7 5949682 5949682 G A CCZ1 Missense_Mutation p.D239N 0.47 tolerated(0.22) benign(0.093) TCGA-HU-A4GP-01 7 64439222 64439222 G A ZNF117 Missense_Mutation p.H243Y 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-HU-A4GP-01 7 73790905 73790905 G A CLIP2 Missense_Mutation p.R725H 0.50 deleterious(0.01) benign(0.157) TCGA-HU-A4GP-01 7 77762312 77762312 G - MAGI2 Frame_Shift_Del p.L1033Wfs*41 0.23 TCGA-HU-A4GP-01 7 82764700 82764700 C A PCLO Missense_Mutation p.Q722H 0.12 unknown(0) TCGA-HU-A4GP-01 7 82784197 82784197 G C PCLO Missense_Mutation p.T587S 0.07 unknown(0) TCGA-HU-A4GP-01 7 84697592 84697592 T C SEMA3D Missense_Mutation p.I168M 0.08 tolerated(0.15) benign(0.001) TCGA-HU-A4GP-01 7 87505936 87505936 G T DBF4 5'UTR 0.67 TCGA-HU-A4GP-01 7 88424067 88424067 C A C7orf62 Missense_Mutation p.D64Y 0.23 deleterious(0.03) benign(0.406) TCGA-HU-A4GP-01 8 104898052 104898052 T C RIMS2 Missense_Mutation p.S409P 0.25 deleterious_low_confidence(0.05) probably_damaging(0.962) TCGA-HU-A4GP-01 8 113933896 113933896 T G CSMD3 Missense_Mutation p.E531D 0.05 tolerated(1) possibly_damaging(0.557) TCGA-HU-A4GP-01 8 116599582 116599582 C T TRPS1 Silent p.K782K 0.10 TCGA-HU-A4GP-01 8 131880177 131880177 C T ADCY8 Missense_Mutation p.D709N 0.06 deleterious(0.01) probably_damaging(0.958) TCGA-HU-A4GP-01 8 132052235 132052235 G A ADCY8 Silent p.S115S 0.35 TCGA-HU-A4GP-01 8 133925324 133925324 C T TG Missense_Mutation p.R1398C 0.55 deleterious(0.05) possibly_damaging(0.874) TCGA-HU-A4GP-01 8 134042161 134042161 C T TG Missense_Mutation p.R2378W 0.27 deleterious(0.01) possibly_damaging(0.67) TCGA-HU-A4GP-01 8 139209814 139209814 A T FAM135B Silent p.R256R 0.05 TCGA-HU-A4GP-01 8 143961216 143961216 G T CYP11B1 Missense_Mutation p.A5E 0.26 tolerated(0.07) benign(0.266) TCGA-HU-A4GP-01 8 32505683 32505683 T G NRG1 Intron 0.05 TCGA-HU-A4GP-01 8 69002817 69002817 C G PREX2 Missense_Mutation p.T706S 0.05 tolerated(1) possibly_damaging(0.484) TCGA-HU-A4GP-01 8 73951418 73951418 G A TERF1 Silent p.P369P 0.26 TCGA-HU-A4GP-01 8 77766219 77766219 T A ZFHX4 Missense_Mutation p.D2354E 0.24 possibly_damaging(0.789) TCGA-HU-A4GP-01 8 77766560 77766560 C A ZFHX4 Missense_Mutation p.T2468K 0.27 possibly_damaging(0.723) TCGA-HU-A4GP-01 9 101304173 101304173 G A GABBR2 Silent p.D204D 0.12 TCGA-HU-A4GP-01 9 132637006 132637006 C T USP20 Missense_Mutation p.S631L 0.06 deleterious(0) possibly_damaging(0.71) TCGA-HU-A4GP-01 9 139358985 139358985 A T SEC16A Missense_Mutation p.F1445I 0.14 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GP-01 9 21077644 21077644 G A IFNB1 Silent p.D75D 0.44 TCGA-HU-A4GP-01 9 98242773 98242773 G C PTCH1 Missense_Mutation p.L282V 0.04 deleterious(0.03) benign(0.072) TCGA-HU-A4GP-01 9 98242774 98242774 C T PTCH1 Missense_Mutation p.M281I 0.04 tolerated(0.12) benign(0.032) TCGA-HU-A4GP-01 X 101912116 101912116 G A GPRASP1 Missense_Mutation p.S1092N 0.56 tolerated(0.52) benign(0.008) TCGA-HU-A4GP-01 X 107975886 107975886 T A IRS4 Missense_Mutation p.D1230V 0.09 deleterious_low_confidence(0) unknown(0) TCGA-HU-A4GP-01 X 107978368 107978368 T A IRS4 Missense_Mutation p.S403C 0.11 deleterious(0) probably_damaging(0.982) TCGA-HU-A4GP-01 X 110576315 110576315 G T DCX Missense_Mutation p.R339S 0.11 deleterious(0.02) possibly_damaging(0.896) TCGA-HU-A4GP-01 X 134681170 134681170 A G DDX26B Missense_Mutation p.D241G 0.58 deleterious(0) possibly_damaging(0.758) TCGA-HU-A4GP-01 X 138699694 138699694 T A MCF2 Missense_Mutation p.K386I 0.67 deleterious(0) possibly_damaging(0.866) TCGA-HU-A4GP-01 X 53230786 53230786 C G KDM5C Missense_Mutation p.E669D 0.07 tolerated(0.79) possibly_damaging(0.606) TCGA-HU-A4GQ-01 10 100189240 100189240 G A HPS1 Intron 0.40 TCGA-HU-A4GQ-01 10 101294895 101294895 G A NKX2-3 Missense_Mutation p.R171Q 0.24 deleterious(0) probably_damaging(0.938) TCGA-HU-A4GQ-01 10 101491804 101491804 C T COX15 Translation_Start_Site p.M1? 0.14 deleterious_low_confidence(0) possibly_damaging(0.885) TCGA-HU-A4GQ-01 10 102242433 102242433 G A WNT8B Missense_Mutation p.V306M 0.29 tolerated(0.17) benign(0.219) TCGA-HU-A4GQ-01 10 102265959 102265959 C A SEC31B Splice_Site p.X295_splice 0.23 TCGA-HU-A4GQ-01 10 102587324 102587324 C - PAX2 Frame_Shift_Del p.R403Gfs*37 0.24 TCGA-HU-A4GQ-01 10 102684492 102684492 A G FAM178A Silent p.S578S 0.05 TCGA-HU-A4GQ-01 10 102719203 102719203 A G FAM178A Missense_Mutation p.R1146G 0.26 deleterious(0) possibly_damaging(0.678) TCGA-HU-A4GQ-01 10 102739097 102739097 G T MRPL43 3'Flank 0.22 TCGA-HU-A4GQ-01 10 103543108 103543108 G A NPM3 Nonsense_Mutation p.Q14* 0.35 TCGA-HU-A4GQ-01 10 104128514 104128514 C T GBF1 Silent p.S965S 0.30 TCGA-HU-A4GQ-01 10 104129937 104129937 G A GBF1 Missense_Mutation p.D1115N 0.29 tolerated(0.56) benign(0.017) TCGA-HU-A4GQ-01 10 104130552 104130552 C T GBF1 Missense_Mutation p.R1198W 0.19 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 10 104679763 104679763 C - CNNM2 Frame_Shift_Del p.L511* 0.13 TCGA-HU-A4GQ-01 10 105330652 105330652 G A NEURL1 Missense_Mutation p.V37I 0.26 tolerated_low_confidence(0.08) benign(0.001) TCGA-HU-A4GQ-01 10 111893350 111893350 A - ADD3 Frame_Shift_Del p.K701Rfs*8 0.26 TCGA-HU-A4GQ-01 10 11504982 11504982 C T USP6NL Missense_Mutation p.A666T 0.19 tolerated_low_confidence(0.46) benign(0.005) TCGA-HU-A4GQ-01 10 118307977 118307977 C T PNLIP Silent p.L103L 0.25 TCGA-HU-A4GQ-01 10 121411231 121411231 G A BAG3 Missense_Mutation p.G15D 0.31 deleterious(0.01) probably_damaging(0.922) TCGA-HU-A4GQ-01 10 121586728 121586728 C T INPP5F Silent p.D945D 0.29 TCGA-HU-A4GQ-01 10 124096124 124096124 G A BTBD16 Missense_Mutation p.G460D 0.40 deleterious(0.05) benign(0.299) TCGA-HU-A4GQ-01 10 124353109 124353109 G C DMBT1 Missense_Mutation p.S842T 0.22 tolerated(0.62) unknown(0) TCGA-HU-A4GQ-01 10 124896767 124896767 G A HMX3 Silent p.A198A 0.29 TCGA-HU-A4GQ-01 10 125526656 125526656 C A CPXM2 Nonsense_Mutation p.G438* 0.27 TCGA-HU-A4GQ-01 10 125801889 125801889 C T CHST15 Missense_Mutation p.A321T 0.27 tolerated(0.06) possibly_damaging(0.786) TCGA-HU-A4GQ-01 10 126495406 126495406 T - FAM175B Frame_Shift_Del p.L28Yfs*5 0.24 TCGA-HU-A4GQ-01 10 126682504 126682504 G A CTBP2 Silent p.D817D 0.37 TCGA-HU-A4GQ-01 10 126691913 126691913 G A CTBP2 Silent p.H609H 0.29 TCGA-HU-A4GQ-01 10 128192694 128192694 C T C10orf90 Missense_Mutation p.A359T 0.16 tolerated(1) benign(0.001) TCGA-HU-A4GQ-01 10 131638574 131638574 G A EBF3 Missense_Mutation p.P520L 0.27 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-HU-A4GQ-01 10 134503931 134503931 A - INPP5A Frame_Shift_Del p.N116Tfs*25 0.21 TCGA-HU-A4GQ-01 10 135211971 135211971 A - MTG1 Frame_Shift_Del p.N107Mfs*8 0.23 TCGA-HU-A4GQ-01 10 13523008 13523008 C T BEND7 Silent p.A266A 0.30 TCGA-HU-A4GQ-01 10 17365073 17365073 A G ST8SIA6 Missense_Mutation p.I240T 0.21 deleterious(0) probably_damaging(0.985) TCGA-HU-A4GQ-01 10 17636321 17636321 C T PTPLA Missense_Mutation p.A223T 0.16 deleterious(0.04) possibly_damaging(0.902) TCGA-HU-A4GQ-01 10 17636369 17636370 - A PTPLA Frame_Shift_Ins p.I207Yfs*11 0.13 TCGA-HU-A4GQ-01 10 17742261 17742261 C T STAM Missense_Mutation p.P299S 0.27 deleterious(0.03) benign(0.04) TCGA-HU-A4GQ-01 10 18242200 18242200 G A SLC39A12 5'UTR 0.29 TCGA-HU-A4GQ-01 10 20290771 20290771 G A PLXDC2 Silent p.A60A 0.19 TCGA-HU-A4GQ-01 10 21845680 21845680 G A MLLT10 Intron 0.24 TCGA-HU-A4GQ-01 10 22048331 22048331 G A DNAJC1 Missense_Mutation p.A455V 0.24 tolerated(0.56) benign(0.035) TCGA-HU-A4GQ-01 10 22880669 22880669 C A PIP4K2A Missense_Mutation p.Q127H 0.25 tolerated(0.14) benign(0.03) TCGA-HU-A4GQ-01 10 22880682 22880682 G A PIP4K2A Missense_Mutation p.P123L 0.29 tolerated(0.45) benign(0.003) TCGA-HU-A4GQ-01 10 25284792 25284792 T - ENKUR Frame_Shift_Del p.N77Tfs*14 0.15 TCGA-HU-A4GQ-01 10 26315378 26315378 T C MYO3A Silent p.I290I 0.32 TCGA-HU-A4GQ-01 10 26500869 26500869 C T MYO3A Missense_Mutation p.R1610W 0.22 deleterious_low_confidence(0) benign(0.097) TCGA-HU-A4GQ-01 10 27702951 27702951 G - PTCHD3 Frame_Shift_Del p.R77Gfs*43 0.26 TCGA-HU-A4GQ-01 10 29710507 29710507 G A PTCHD3P1 RNA 0.25 TCGA-HU-A4GQ-01 10 33218834 33218834 G A ITGB1 Missense_Mutation p.R98C 0.26 deleterious(0) benign(0.159) TCGA-HU-A4GQ-01 10 38406962 38406962 G - ZNF37A Frame_Shift_Del p.G296Efs*135 0.22 TCGA-HU-A4GQ-01 10 48388554 48388554 G A RBP3 Missense_Mutation p.T775M 0.31 deleterious(0) probably_damaging(0.938) TCGA-HU-A4GQ-01 10 50369568 50369568 C T C10orf128 Intron 0.37 TCGA-HU-A4GQ-01 10 50374922 50374922 C - C10orf128 Frame_Shift_Del p.G77Afs*8 0.25 TCGA-HU-A4GQ-01 10 50691467 50691467 G A ERCC6 Silent p.D639D 0.21 TCGA-HU-A4GQ-01 10 50827816 50827816 A G CHAT Missense_Mutation p.T145A 0.16 tolerated(0.76) benign(0.21) TCGA-HU-A4GQ-01 10 55583033 55583033 A G PCDH15 Missense_Mutation p.F1487L 0.32 tolerated_low_confidence(0.09) benign(0.011) TCGA-HU-A4GQ-01 10 5682649 5682649 C T ASB13 3'UTR 0.29 TCGA-HU-A4GQ-01 10 5966457 5966457 A T FBXO18 Missense_Mutation p.D912V 0.23 deleterious(0.02) possibly_damaging(0.697) TCGA-HU-A4GQ-01 10 6008297 6008297 T G IL15RA Missense_Mutation p.T32P 0.23 deleterious(0) probably_damaging(0.991) TCGA-HU-A4GQ-01 10 61552417 61552417 C T CCDC6 3'UTR 0.22 TCGA-HU-A4GQ-01 10 63959523 63959523 G A RTKN2 Silent p.Y428Y 0.29 TCGA-HU-A4GQ-01 10 65354563 65354563 T - REEP3 Frame_Shift_Del p.F45Lfs*6 0.20 TCGA-HU-A4GQ-01 10 68940230 68940230 G A CTNNA3 Missense_Mutation p.P298S 0.23 deleterious(0) possibly_damaging(0.876) TCGA-HU-A4GQ-01 10 70332337 70332337 G A TET1 Missense_Mutation p.R81H 0.19 tolerated(0.07) possibly_damaging(0.609) TCGA-HU-A4GQ-01 10 70706238 70706238 G A DDX50 Missense_Mutation p.R689Q 0.35 tolerated(0.19) unknown(0) TCGA-HU-A4GQ-01 10 72498727 72498727 C T ADAMTS14 Missense_Mutation p.R580W 0.08 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GQ-01 10 73462408 73462408 C T CDH23 Missense_Mutation p.A489V 0.26 tolerated(0.19) possibly_damaging(0.792) TCGA-HU-A4GQ-01 10 73491781 73491781 C T CDH23 Silent p.G1256G 0.17 TCGA-HU-A4GQ-01 10 73501579 73501579 C T CDH23 Silent p.S1587S 0.22 TCGA-HU-A4GQ-01 10 75673765 75673765 C T PLAU Silent p.I236I 0.35 TCGA-HU-A4GQ-01 10 76789460 76789460 C A KAT6B Nonsense_Mutation p.Y1626* 0.35 TCGA-HU-A4GQ-01 10 76980624 76980624 G A VDAC2 Nonsense_Mutation p.W175* 0.14 TCGA-HU-A4GQ-01 10 8100746 8100746 G - GATA3 Frame_Shift_Del p.G241Afs*25 0.20 TCGA-HU-A4GQ-01 10 81917463 81917463 G A ANXA11 Silent p.T464T 0.19 TCGA-HU-A4GQ-01 10 84745202 84745202 C A NRG3 Silent p.A644A 0.27 TCGA-HU-A4GQ-01 10 88659627 88659627 C T BMPR1A Missense_Mutation p.T137I 0.22 deleterious(0.05) possibly_damaging(0.77) TCGA-HU-A4GQ-01 10 88702881 88702881 C A MMRN2 Missense_Mutation p.G554C 0.40 deleterious(0.05) possibly_damaging(0.711) TCGA-HU-A4GQ-01 10 90665312 90665312 C A STAMBPL1 Missense_Mutation p.P48Q 0.28 deleterious(0.01) probably_damaging(1) TCGA-HU-A4GQ-01 10 93610997 93610998 - T TNKS2 Frame_Shift_Ins p.M907Ifs*17 0.24 TCGA-HU-A4GQ-01 10 94221002 94221002 A G IDE Silent p.T923T 0.14 TCGA-HU-A4GQ-01 10 94294478 94294479 - A IDE Frame_Shift_Ins p.L116Ffs*8 0.28 TCGA-HU-A4GQ-01 10 94822567 94822567 G A CYP26C1 Missense_Mutation p.A174T 0.17 tolerated(0.17) benign(0.01) TCGA-HU-A4GQ-01 10 94822703 94822703 A T CYP26C1 Missense_Mutation p.E219V 0.22 deleterious(0.01) probably_damaging(0.919) TCGA-HU-A4GQ-01 10 94833762 94833762 C T CYP26A1 Missense_Mutation p.A24V 0.21 tolerated(0.16) benign(0.086) TCGA-HU-A4GQ-01 10 95556956 95556956 C T LGI1 Missense_Mutation p.T357I 0.26 deleterious(0.02) probably_damaging(1) TCGA-HU-A4GQ-01 10 95790773 95790773 G A PLCE1 5'UTR 0.31 TCGA-HU-A4GQ-01 10 96352051 96352051 A - HELLS Frame_Shift_Del p.R614Efs*11 0.26 TCGA-HU-A4GQ-01 10 97956800 97956800 C T BLNK Missense_Mutation p.R372Q 0.09 deleterious(0) probably_damaging(0.974) TCGA-HU-A4GQ-01 10 98369534 98369534 A G PIK3AP1 Missense_Mutation p.V702A 0.22 tolerated(0.73) benign(0.005) TCGA-HU-A4GQ-01 10 99118343 99118343 G A RRP12 Missense_Mutation p.P1248S 0.26 deleterious(0.05) benign(0.221) TCGA-HU-A4GQ-01 10 99623943 99623943 C T GOLGA7B Missense_Mutation p.R104C 0.28 deleterious(0.01) possibly_damaging(0.849) TCGA-HU-A4GQ-01 11 101765643 101765644 - A ANGPTL5 Frame_Shift_Ins p.K272* 0.19 TCGA-HU-A4GQ-01 11 101849177 101849177 G A KIAA1377 Missense_Mutation p.S982N 0.35 tolerated(0.3) benign(0.003) TCGA-HU-A4GQ-01 11 102738713 102738713 G T MMP12 RNA 0.31 TCGA-HU-A4GQ-01 11 102825278 102825278 T - MMP13 Frame_Shift_Del p.A141Pfs*8 0.22 TCGA-HU-A4GQ-01 11 102826023 102826023 A - MMP13 Frame_Shift_Del p.F107Sfs*10 0.25 TCGA-HU-A4GQ-01 11 103780444 103780444 C T PDGFD Missense_Mutation p.C364Y 0.24 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GQ-01 11 10500144 10500145 - C AMPD3 Frame_Shift_Ins p.A110Gfs*29 0.27 TCGA-HU-A4GQ-01 11 107799501 107799501 G A RAB39A Silent p.T69T 0.38 TCGA-HU-A4GQ-01 11 107944205 107944207 TTC - CUL5 In_Frame_Del p.L366del 0.28 TCGA-HU-A4GQ-01 11 107960253 107960253 T - CUL5 Frame_Shift_Del p.F450Lfs*2 0.25 TCGA-HU-A4GQ-01 11 107968391 107968391 G A CUL5 Missense_Mutation p.R645Q 0.17 tolerated(0.39) benign(0.08) TCGA-HU-A4GQ-01 11 1081791 1081791 C A MUC2 Silent p.P573P 0.33 TCGA-HU-A4GQ-01 11 1083287 1083287 G A MUC2 Silent p.A729A 0.48 TCGA-HU-A4GQ-01 11 108594061 108594061 G A DDX10 Missense_Mutation p.A613T 0.34 tolerated(0.42) benign(0.002) TCGA-HU-A4GQ-01 11 108811161 108811161 C T DDX10 3'UTR 0.24 TCGA-HU-A4GQ-01 11 113283448 113283448 G A DRD2 Missense_Mutation p.A323V 0.33 tolerated(0.34) benign(0.005) TCGA-HU-A4GQ-01 11 113679043 113679043 C T USP28 Missense_Mutation p.G761S 0.24 tolerated(0.27) possibly_damaging(0.817) TCGA-HU-A4GQ-01 11 116619250 116619250 C T BUD13 Missense_Mutation p.S603N 0.26 tolerated(0.86) benign(0.123) TCGA-HU-A4GQ-01 11 116729395 116729395 G A SIK3 Missense_Mutation p.S823F 0.28 deleterious_low_confidence(0) possibly_damaging(0.794) TCGA-HU-A4GQ-01 11 117209321 117209321 C T CEP164 Missense_Mutation p.R7C 0.25 tolerated(0.1) benign(0.031) TCGA-HU-A4GQ-01 11 117232594 117232594 G A CEP164 Missense_Mutation p.G146D 0.32 deleterious(0.01) probably_damaging(0.948) TCGA-HU-A4GQ-01 11 117308780 117308780 C T DSCAML1 Silent p.S1481S 0.38 TCGA-HU-A4GQ-01 11 117335865 117335865 G A DSCAML1 Missense_Mutation p.R1080W 0.30 deleterious(0.01) probably_damaging(0.995) TCGA-HU-A4GQ-01 11 117870430 117870430 G A IL10RA 3'UTR 0.22 TCGA-HU-A4GQ-01 11 118352503 118352503 C T KMT2A Silent p.N1236N 0.23 TCGA-HU-A4GQ-01 11 118499338 118499338 G A PHLDB1 Missense_Mutation p.R600Q 0.30 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GQ-01 11 118770652 118770652 G - BCL9L Frame_Shift_Del p.P1127Hfs*21 0.31 TCGA-HU-A4GQ-01 11 118772509 118772509 C - BCL9L Frame_Shift_Del p.G648Dfs*23 0.24 TCGA-HU-A4GQ-01 11 118948655 118948655 G A VPS11 Missense_Mutation p.R546H 0.25 deleterious(0.03) probably_damaging(0.913) TCGA-HU-A4GQ-01 11 1213616 1213616 C A MUC5AC RNA 0.30 TCGA-HU-A4GQ-01 11 123601673 123601673 G A ZNF202 5'UTR 0.15 TCGA-HU-A4GQ-01 11 124972174 124972174 G A TMEM218 5'UTR 0.31 TCGA-HU-A4GQ-01 11 125301338 125301338 G A PKNOX2 3'UTR 0.14 TCGA-HU-A4GQ-01 11 12785791 12785791 C T TEAD1 Silent p.S4S 0.18 TCGA-HU-A4GQ-01 11 128350145 128350145 C T ETS1 Missense_Mutation p.R355H 0.26 deleterious(0) probably_damaging(0.992) TCGA-HU-A4GQ-01 11 128680442 128680442 C T FLI1 Silent p.N306N 0.30 TCGA-HU-A4GQ-01 11 128993399 128993399 G A ARHGAP32 Missense_Mutation p.P115L 0.12 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GQ-01 11 134109913 134109913 C T VPS26B Missense_Mutation p.R137C 0.18 deleterious(0) probably_damaging(0.965) TCGA-HU-A4GQ-01 11 134126526 134126526 C T ACAD8 Missense_Mutation p.A65V 0.19 tolerated(0.13) benign(0.016) TCGA-HU-A4GQ-01 11 16208344 16208344 G A SOX6 Silent p.R231R 0.10 TCGA-HU-A4GQ-01 11 18159128 18159128 C T MRGPRX3 Missense_Mutation p.P127S 0.26 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GQ-01 11 20907030 20907030 C - NELL1 Frame_Shift_Del p.P184Qfs*34 0.12 TCGA-HU-A4GQ-01 11 22242647 22242647 A - ANO5 Frame_Shift_Del p.N64Ifs*27 0.15 TCGA-HU-A4GQ-01 11 2924669 2924669 C A SLC22A18 Missense_Mutation p.L32M 0.29 deleterious(0.03) probably_damaging(0.979) TCGA-HU-A4GQ-01 11 31284510 31284510 G A DCDC1 3'UTR 0.28 TCGA-HU-A4GQ-01 11 32635393 32635393 T - CCDC73 Frame_Shift_Del p.N824Mfs*7 0.18 TCGA-HU-A4GQ-01 11 33080509 33080510 - T TCP11L1 Frame_Shift_Ins p.S217Ffs*17 0.15 TCGA-HU-A4GQ-01 11 33106750 33106750 T C CSTF3 Silent p.V679V 0.33 TCGA-HU-A4GQ-01 11 33369417 33369417 A G HIPK3 Missense_Mutation p.N722D 0.26 deleterious(0.01) benign(0.04) TCGA-HU-A4GQ-01 11 34158307 34158307 C - NAT10 Frame_Shift_Del p.R718Gfs*16 0.25 TCGA-HU-A4GQ-01 11 36614195 36614195 T - RAG2 Frame_Shift_Del p.G509Vfs*6 0.22 TCGA-HU-A4GQ-01 11 3688709 3688709 G A CHRNA10 Silent p.Y216Y 0.38 TCGA-HU-A4GQ-01 11 400009 400009 G A PKP3 Missense_Mutation p.R439H 0.16 deleterious(0.01) possibly_damaging(0.863) TCGA-HU-A4GQ-01 11 43283908 43283908 C T HNRNPKP3 RNA 0.23 TCGA-HU-A4GQ-01 11 45204517 45204517 C T PRDM11 Missense_Mutation p.A110V 0.29 tolerated(0.1) possibly_damaging(0.88) TCGA-HU-A4GQ-01 11 45671832 45671832 G A CHST1 Silent p.N214N 0.31 TCGA-HU-A4GQ-01 11 45948971 45948971 C A GYLTL1B Silent p.A477A 0.26 TCGA-HU-A4GQ-01 11 45955742 45955742 C T PHF21A Missense_Mutation p.R607Q 0.18 tolerated(0.25) benign(0.027) TCGA-HU-A4GQ-01 11 46395999 46395999 G A DGKZ Missense_Mutation p.A674T 0.34 deleterious(0) probably_damaging(0.987) TCGA-HU-A4GQ-01 11 47357511 47357511 G A MYBPC3 Missense_Mutation p.T885M 0.14 deleterious(0) probably_damaging(0.989) TCGA-HU-A4GQ-01 11 47364465 47364465 C T MYBPC3 Missense_Mutation p.R458H 0.28 tolerated(0.16) benign(0.022) TCGA-HU-A4GQ-01 11 47436469 47436469 G A SLC39A13 Intron 0.26 TCGA-HU-A4GQ-01 11 48188871 48188871 C T PTPRJ Missense_Mutation p.A1324V 0.24 deleterious(0.02) benign(0.242) TCGA-HU-A4GQ-01 11 49179535 49179535 T - FOLH1 Frame_Shift_Del p.S501Vfs*12 0.26 TCGA-HU-A4GQ-01 11 5153860 5153860 T C OR52A5 Missense_Mutation p.N5D 0.15 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GQ-01 11 5274528 5274528 G C HBG2 Silent p.A141A 0.25 TCGA-HU-A4GQ-01 11 55653610 55653610 A - TRIM51 Frame_Shift_Del p.M144Cfs*15 0.49 TCGA-HU-A4GQ-01 11 558069 558069 G - C11orf35 Intron 0.43 TCGA-HU-A4GQ-01 11 56258299 56258299 A G OR5M8 Missense_Mutation p.L183P 0.28 deleterious(0) probably_damaging(0.996) TCGA-HU-A4GQ-01 11 57313372 57313372 C T SMTNL1 Silent p.D330D 0.29 TCGA-HU-A4GQ-01 11 57466520 57466520 C T ZDHHC5 Missense_Mutation p.R538C 0.26 tolerated(0.05) possibly_damaging(0.548) TCGA-HU-A4GQ-01 11 57466723 57466723 C T ZDHHC5 Silent p.V605V 0.21 TCGA-HU-A4GQ-01 11 5776875 5776875 T G OR52N4 Missense_Mutation p.I302R 0.24 deleterious(0) probably_damaging(0.993) TCGA-HU-A4GQ-01 11 58125979 58125979 A G OR5B17 Silent p.S188S 0.29 TCGA-HU-A4GQ-01 11 58126399 58126399 C A OR5B17 Silent p.L48L 0.30 TCGA-HU-A4GQ-01 11 58275021 58275021 T C OR5B21 Silent p.S186S 0.24 TCGA-HU-A4GQ-01 11 58979971 58979972 - A MPEG1 Frame_Shift_Ins p.S123Ffs*10 0.17 TCGA-HU-A4GQ-01 11 60703568 60703568 G A TMEM132A Missense_Mutation p.R755H 0.25 deleterious(0) possibly_damaging(0.868) TCGA-HU-A4GQ-01 11 609301 609301 A T PHRF1 Missense_Mutation p.Q1281L 0.20 deleterious(0.01) possibly_damaging(0.607) TCGA-HU-A4GQ-01 11 61113349 61113349 G - DAK Frame_Shift_Del p.Q504Rfs*17 0.17 TCGA-HU-A4GQ-01 11 61511485 61511485 G - DAGLA Frame_Shift_Del p.G886Vfs*118 0.21 TCGA-HU-A4GQ-01 11 61557966 61557966 C T TMEM258 Missense_Mutation p.V38I 0.13 tolerated(0.66) benign(0.112) TCGA-HU-A4GQ-01 11 62159723 62159723 T A ASRGL1 Missense_Mutation p.D298E 0.20 tolerated(0.41) benign(0.003) TCGA-HU-A4GQ-01 11 62298080 62298080 T C AHNAK Missense_Mutation p.E1270G 0.25 possibly_damaging(0.637) TCGA-HU-A4GQ-01 11 62533156 62533156 G A POLR2G Missense_Mutation p.R144H 0.23 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 11 63764564 63764564 G A OTUB1 Missense_Mutation p.A156T 0.16 tolerated(0.49) benign(0.002) TCGA-HU-A4GQ-01 11 64012400 64012400 A G PPP1R14B Splice_Site p.X125_splice 0.22 TCGA-HU-A4GQ-01 11 64436033 64436033 G A NRXN2 Missense_Mutation p.T414M 0.25 deleterious(0.04) possibly_damaging(0.82) TCGA-HU-A4GQ-01 11 64502632 64502632 C T RASGRP2 Missense_Mutation p.R455H 0.24 deleterious(0.02) probably_damaging(0.917) TCGA-HU-A4GQ-01 11 64602606 64602606 T G CDC42BPG Missense_Mutation p.Q658P 0.24 deleterious(0.04) benign(0.125) TCGA-HU-A4GQ-01 11 64627709 64627709 G A EHD1 Missense_Mutation p.S201L 0.34 tolerated(0.09) benign(0.34) TCGA-HU-A4GQ-01 11 64675237 64675237 G A ATG2A Silent p.Y830Y 0.30 TCGA-HU-A4GQ-01 11 64875963 64875963 C T VPS51 Silent p.F340F 0.35 TCGA-HU-A4GQ-01 11 64953462 64953462 C T CAPN1 Silent p.F177F 0.19 TCGA-HU-A4GQ-01 11 65269017 65269018 AG - MALAT1 RNA 0.20 TCGA-HU-A4GQ-01 11 65386029 65386029 G A PCNXL3 Missense_Mutation p.R399Q 0.26 tolerated(0.07) possibly_damaging(0.709) TCGA-HU-A4GQ-01 11 65403107 65403107 G A PCNXL3 Silent p.A1764A 0.54 TCGA-HU-A4GQ-01 11 65620191 65620191 C T SNX32 Missense_Mutation p.R335W 0.24 deleterious(0.05) benign(0.001) TCGA-HU-A4GQ-01 11 65648955 65648955 G A CTSW Missense_Mutation p.A84T 0.25 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GQ-01 11 65836146 65836146 A - SF3B2 Frame_Shift_Del p.K875Nfs*59 0.41 TCGA-HU-A4GQ-01 11 66243212 66243212 G A PELI3 Silent p.A328A 0.33 TCGA-HU-A4GQ-01 11 66260192 66260192 G A DPP3 Missense_Mutation p.V332I 0.27 deleterious(0) possibly_damaging(0.813) TCGA-HU-A4GQ-01 11 6631234 6631234 G A ILK Missense_Mutation p.R349H 0.23 tolerated(0.08) possibly_damaging(0.68) TCGA-HU-A4GQ-01 11 66372815 66372815 C T CCS Silent p.R165R 0.19 TCGA-HU-A4GQ-01 11 66460165 66460165 C T SPTBN2 Missense_Mutation p.G1678S 0.22 tolerated(0.3) benign(0.003) TCGA-HU-A4GQ-01 11 66473194 66473194 C T SPTBN2 Missense_Mutation p.V590I 0.16 tolerated(0.39) probably_damaging(0.994) TCGA-HU-A4GQ-01 11 6648203 6648203 C A DCHS1 Missense_Mutation p.A2023S 0.24 tolerated(0.62) benign(0.001) TCGA-HU-A4GQ-01 11 6651814 6651814 G A DCHS1 Missense_Mutation p.A1404V 0.29 tolerated(1) benign(0.029) TCGA-HU-A4GQ-01 11 66619987 66619987 C T PC Missense_Mutation p.R583H 0.31 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 11 6662035 6662035 A G DCHS1 Silent p.P270P 0.29 TCGA-HU-A4GQ-01 11 67164978 67164978 C - RAD9A Frame_Shift_Del p.Q377Rfs*20 0.24 TCGA-HU-A4GQ-01 11 67203412 67203412 G A PTPRCAP Missense_Mutation p.S138F 0.19 deleterious(0.02) benign(0.1) TCGA-HU-A4GQ-01 11 67223140 67223140 C T CABP4 Silent p.G82G 0.25 TCGA-HU-A4GQ-01 11 67926241 67926241 A G SUV420H1 Silent p.G524G 0.18 TCGA-HU-A4GQ-01 11 679753 679753 G A DEAF1 Missense_Mutation p.T354M 0.27 deleterious(0) possibly_damaging(0.81) TCGA-HU-A4GQ-01 11 68125314 68125314 C T LRP5 Missense_Mutation p.R229W 0.20 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 11 68701933 68701933 C T IGHMBP2 Silent p.G513G 0.35 TCGA-HU-A4GQ-01 11 70338532 70338532 G A SHANK2 Missense_Mutation p.R784C 0.23 tolerated(0.19) probably_damaging(0.917) TCGA-HU-A4GQ-01 11 7110404 7110404 A - RBMXL2 Frame_Shift_Del p.T19Pfs*21 0.30 TCGA-HU-A4GQ-01 11 71822259 71822259 G A ANAPC15 Nonsense_Mutation p.R22* 0.34 TCGA-HU-A4GQ-01 11 72540364 72540364 G A ATG16L2 Missense_Mutation p.V597M 0.27 deleterious(0) possibly_damaging(0.853) TCGA-HU-A4GQ-01 11 73101832 73101832 C - RELT Frame_Shift_Del p.P53Qfs*178 0.19 TCGA-HU-A4GQ-01 11 74547254 74547254 G - RNF169 Frame_Shift_Del p.G537Efs*15 0.21 TCGA-HU-A4GQ-01 11 74914466 74914466 G A SLCO2B1 Missense_Mutation p.R648Q 0.26 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GQ-01 11 75501723 75501723 T C DGAT2 Missense_Mutation p.W126R 0.30 deleterious(0) possibly_damaging(0.887) TCGA-HU-A4GQ-01 11 7670467 7670467 G A PPFIBP2 Splice_Site p.X666_splice 0.18 TCGA-HU-A4GQ-01 11 76751075 76751075 G A B3GNT6 Silent p.P160P 0.43 TCGA-HU-A4GQ-01 11 77667073 77667073 C T INTS4 Missense_Mutation p.R278H 0.20 tolerated(0.07) possibly_damaging(0.629) TCGA-HU-A4GQ-01 11 77920763 77920763 T C USP35 Missense_Mutation p.I621T 0.31 tolerated(0.4) unknown(0) TCGA-HU-A4GQ-01 11 78369635 78369635 C A TENM4 Missense_Mutation p.R2593M 0.16 deleterious(0) benign(0.028) TCGA-HU-A4GQ-01 11 78413245 78413245 G A TENM4 Silent p.T1471T 0.32 TCGA-HU-A4GQ-01 11 82878523 82878523 C T PCF11 Nonsense_Mutation p.R690* 0.21 TCGA-HU-A4GQ-01 11 84027956 84027956 C T DLG2 Intron 0.35 TCGA-HU-A4GQ-01 11 84245742 84245742 A G DLG2 Silent p.H130H 0.22 TCGA-HU-A4GQ-01 11 8496261 8496262 - T STK33 Frame_Shift_Ins p.N64Kfs*44 0.19 TCGA-HU-A4GQ-01 11 85396954 85396954 A G CCDC89 Missense_Mutation p.S74P 0.14 tolerated(0.11) probably_damaging(0.998) TCGA-HU-A4GQ-01 11 900108 900108 G A CHID1 Missense_Mutation p.P173S 0.29 deleterious(0.03) probably_damaging(0.994) TCGA-HU-A4GQ-01 11 92590502 92590502 G A FAT3 Missense_Mutation p.G3830R 0.25 probably_damaging(0.994) TCGA-HU-A4GQ-01 11 93494710 93494710 T - C11orf54 Frame_Shift_Del p.F220Lfs*18 0.17 TCGA-HU-A4GQ-01 11 94730458 94730458 T - KDM4D 5'UTR 0.33 TCGA-HU-A4GQ-01 11 95513059 95513059 C T FAM76B Missense_Mutation p.G199R 0.19 tolerated(0.14) benign(0.082) TCGA-HU-A4GQ-01 11 9810688 9810688 T C SBF2 Missense_Mutation p.T1634A 0.21 tolerated(0.97) benign(0) TCGA-HU-A4GQ-01 11 993774 993774 T C AP2A2 Missense_Mutation p.L524P 0.31 deleterious(0.02) probably_damaging(0.997) TCGA-HU-A4GQ-01 12 100041890 100041890 G A FAM71C 5'UTR 0.36 TCGA-HU-A4GQ-01 12 10010142 10010142 C T CLEC2B Nonsense_Mutation p.W56* 0.21 TCGA-HU-A4GQ-01 12 100567203 100567203 C T RP11-175P13.3 RNA 0.29 TCGA-HU-A4GQ-01 12 101504234 101504234 A T ANO4 Silent p.P699P 0.28 TCGA-HU-A4GQ-01 12 104034015 104034015 G A STAB2 Missense_Mutation p.V341I 0.19 tolerated(0.86) benign(0.001) TCGA-HU-A4GQ-01 12 104373687 104373688 - A TDG Frame_Shift_Ins p.S85Ifs*19 0.14 TCGA-HU-A4GQ-01 12 106773822 106773822 A - POLR3B Frame_Shift_Del p.S212Afs*7 0.25 TCGA-HU-A4GQ-01 12 108626654 108626654 G T WSCD2 Missense_Mutation p.G376C 0.36 deleterious(0) probably_damaging(0.997) TCGA-HU-A4GQ-01 12 108924005 108924005 G A SART3 Missense_Mutation p.A610V 0.26 tolerated(0.07) benign(0.222) TCGA-HU-A4GQ-01 12 10954878 10954878 A G TAS2R7 Missense_Mutation p.W98R 0.31 deleterious(0) probably_damaging(0.967) TCGA-HU-A4GQ-01 12 109677751 109677751 C A ACACB Missense_Mutation p.F1593L 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-HU-A4GQ-01 12 110206330 110206330 T C FAM222A Missense_Mutation p.I199T 0.23 deleterious(0) probably_damaging(0.964) TCGA-HU-A4GQ-01 12 110450965 110450965 A G ANKRD13A Missense_Mutation p.M89V 0.25 deleterious(0.01) benign(0.098) TCGA-HU-A4GQ-01 12 110812029 110812029 C A ANAPC7 Missense_Mutation p.G574W 0.30 deleterious(0.01) probably_damaging(1) TCGA-HU-A4GQ-01 12 111088012 111088012 G A HVCN1 Silent p.A239A 0.23 TCGA-HU-A4GQ-01 12 111356949 111356949 A C MYL2 Missense_Mutation p.F18V 0.25 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GQ-01 12 112608179 112608179 C T HECTD4 Missense_Mutation p.A3858T 0.20 probably_damaging(0.99) TCGA-HU-A4GQ-01 12 112622719 112622719 T C HECTD4 Missense_Mutation p.M3205V 0.31 benign(0.022) TCGA-HU-A4GQ-01 12 112630521 112630521 G A HECTD4 Silent p.L2899L 0.20 TCGA-HU-A4GQ-01 12 113532597 113532597 T C DTX1 Missense_Mutation p.C411R 0.20 deleterious(0.02) probably_damaging(1) TCGA-HU-A4GQ-01 12 113534523 113534523 C T DTX1 Silent p.L548L 0.14 TCGA-HU-A4GQ-01 12 113600761 113600761 G A DDX54 Missense_Mutation p.T724M 0.29 tolerated(0.21) possibly_damaging(0.707) TCGA-HU-A4GQ-01 12 117387508 117387508 C T FBXW8 Missense_Mutation p.A225V 0.23 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GQ-01 12 118619376 118619376 C T TAOK3 Missense_Mutation p.E456K 0.29 tolerated(0.1) possibly_damaging(0.475) TCGA-HU-A4GQ-01 12 120220362 120220362 A G CIT Missense_Mutation p.I542T 0.25 tolerated(0.19) benign(0.437) TCGA-HU-A4GQ-01 12 12022502 12022502 C - ETV6 Frame_Shift_Del p.L205Wfs*4 0.22 TCGA-HU-A4GQ-01 12 120649901 120649901 A G PXN 3'UTR 0.35 TCGA-HU-A4GQ-01 12 120995154 120995154 C T RNF10 Missense_Mutation p.R239C 0.28 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GQ-01 12 121175240 121175240 A - ACADS Frame_Shift_Del p.I149Lfs*31 0.20 TCGA-HU-A4GQ-01 12 122217329 122217329 G A TMEM120B 3'UTR 0.25 TCGA-HU-A4GQ-01 12 123001835 123001835 G A RSRC2 Missense_Mutation p.R181C 0.33 deleterious_low_confidence(0.02) unknown(0) TCGA-HU-A4GQ-01 12 123052858 123052858 T - KNTC1 Frame_Shift_Del p.L554Yfs*3 0.27 TCGA-HU-A4GQ-01 12 123472373 123472373 T C PITPNM2 Missense_Mutation p.M1025V 0.24 deleterious(0.02) probably_damaging(0.91) TCGA-HU-A4GQ-01 12 123875317 123875317 C T SETD8 Silent p.I91I 0.15 TCGA-HU-A4GQ-01 12 124228805 124228805 G A ATP6V0A2 Missense_Mutation p.G416E 0.25 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 12 124421929 124421929 G A CCDC92 Silent p.F224F 0.21 TCGA-HU-A4GQ-01 12 124826557 124826557 G A NCOR2 Missense_Mutation p.P1667L 0.30 probably_damaging(0.942) TCGA-HU-A4GQ-01 12 125397325 125397325 C T UBC Silent p.K331K 0.30 TCGA-HU-A4GQ-01 12 125397350 125397350 G A UBC Missense_Mutation p.P323L 0.21 tolerated(0.24) benign(0.348) TCGA-HU-A4GQ-01 12 125397535 125397535 C A UBC Missense_Mutation p.K261N 0.27 deleterious(0.01) possibly_damaging(0.842) TCGA-HU-A4GQ-01 12 125434766 125434766 C T DHX37 Missense_Mutation p.A1049T 0.25 tolerated(0.22) benign(0.062) TCGA-HU-A4GQ-01 12 126135480 126135480 C T TMEM132B Missense_Mutation p.P627L 0.34 tolerated(1) benign(0.024) TCGA-HU-A4GQ-01 12 130856192 130856192 T - PIWIL1 3'UTR 0.23 TCGA-HU-A4GQ-01 12 130926863 130926863 G A RIMBP2 Missense_Mutation p.T328M 0.15 deleterious(0.04) benign(0.042) TCGA-HU-A4GQ-01 12 130926883 130926883 C T RIMBP2 Silent p.A321A 0.12 TCGA-HU-A4GQ-01 12 131283100 131283100 T - STX2 Frame_Shift_Del p.A253Lfs*14 0.23 TCGA-HU-A4GQ-01 12 132446440 132446442 GAA - EP400 In_Frame_Del p.E437del 0.21 TCGA-HU-A4GQ-01 12 133218372 133218372 C T POLE Missense_Mutation p.D1747N 0.24 deleterious(0) probably_damaging(0.988) TCGA-HU-A4GQ-01 12 14018807 14018807 G A GRIN2B Silent p.L112L 0.25 TCGA-HU-A4GQ-01 12 15475648 15475648 C T PTPRO 5'UTR 0.21 TCGA-HU-A4GQ-01 12 1748963 1748963 C T WNT5B Missense_Mutation p.R148W 0.32 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GQ-01 12 18644489 18644489 C T PIK3C2G Silent p.H889H 0.18 TCGA-HU-A4GQ-01 12 22218307 22218310 TTGA - CMAS 3'UTR 0.39 TCGA-HU-A4GQ-01 12 26752212 26752212 C T ITPR2 Missense_Mutation p.E1290K 0.27 deleterious(0.04) possibly_damaging(0.869) TCGA-HU-A4GQ-01 12 2760796 2760796 C T CACNA1C Intron 0.26 TCGA-HU-A4GQ-01 12 2795387 2795387 A G CACNA1C Silent p.G1960G 0.22 TCGA-HU-A4GQ-01 12 3043651 3043651 G A TULP3 Missense_Mutation p.R283H 0.22 tolerated(0.35) benign(0.001) TCGA-HU-A4GQ-01 12 39734129 39734129 T - KIF21A Frame_Shift_Del p.V717Lfs*12 0.24 TCGA-HU-A4GQ-01 12 41831663 41831663 T C PDZRN4 Intron 0.17 TCGA-HU-A4GQ-01 12 42854129 42854129 C T PRICKLE1 Missense_Mutation p.V660I 0.17 tolerated(0.18) benign(0.033) TCGA-HU-A4GQ-01 12 46230679 46230679 C T ARID2 Missense_Mutation p.R310C 0.31 deleterious(0) probably_damaging(0.997) TCGA-HU-A4GQ-01 12 4665605 4665605 A G RAD51AP1 Missense_Mutation p.R287G 0.29 tolerated(0.25) benign(0.03) TCGA-HU-A4GQ-01 12 48534550 48534550 G A PFKM Missense_Mutation p.A484T 0.27 deleterious(0.01) possibly_damaging(0.873) TCGA-HU-A4GQ-01 12 49312541 49312541 G A CCDC65 Missense_Mutation p.R294H 0.33 deleterious(0) benign(0.302) TCGA-HU-A4GQ-01 12 49396674 49396674 C - PRKAG1 3'UTR 0.19 TCGA-HU-A4GQ-01 12 49441816 49441816 C - KMT2D Frame_Shift_Del p.A1390Qfs*27 0.22 TCGA-HU-A4GQ-01 12 50025229 50025229 C - PRPF40B Frame_Shift_Del p.M46* 0.21 TCGA-HU-A4GQ-01 12 50189788 50189788 G - NCKAP5L Frame_Shift_Del p.Q619Kfs*53 0.18 TCGA-HU-A4GQ-01 12 50195699 50195699 G T NCKAP5L Silent p.R95R 0.19 TCGA-HU-A4GQ-01 12 50367197 50367197 G A AQP6 Missense_Mutation p.A81T 0.20 deleterious(0.03) benign(0.147) TCGA-HU-A4GQ-01 12 50501398 50501398 G A GPD1 Missense_Mutation p.D221N 0.26 tolerated(0.36) benign(0.006) TCGA-HU-A4GQ-01 12 50594689 50594689 A - LIMA1 Intron 0.19 TCGA-HU-A4GQ-01 12 51392999 51392999 A - SLC11A2 Frame_Shift_Del p.F240Lfs*19 0.28 TCGA-HU-A4GQ-01 12 5153903 5153903 C T KCNA5 Missense_Mutation p.A197V 0.28 tolerated(0.28) benign(0.006) TCGA-HU-A4GQ-01 12 51636173 51636173 C T DAZAP2 Missense_Mutation p.R121C 0.23 deleterious_low_confidence(0.04) benign(0) TCGA-HU-A4GQ-01 12 53069361 53069361 G A KRT1 Silent p.S517S 0.26 TCGA-HU-A4GQ-01 12 53188043 53188043 A G KRT3 Missense_Mutation p.S240P 0.26 deleterious(0.02) benign(0.131) TCGA-HU-A4GQ-01 12 53293791 53293791 T G KRT8 Missense_Mutation p.N278T 0.29 deleterious(0.01) possibly_damaging(0.71) TCGA-HU-A4GQ-01 12 53452903 53452903 C - TENC1 Frame_Shift_Del p.P505Rfs*25 0.23 TCGA-HU-A4GQ-01 12 53700604 53700604 A G C12orf10 Silent p.R302R 0.21 TCGA-HU-A4GQ-01 12 54428192 54428192 T C HOXC5 Silent p.N195N 0.35 TCGA-HU-A4GQ-01 12 54447822 54447822 G A HOXC4 Missense_Mutation p.R39Q 0.20 tolerated(0.46) possibly_damaging(0.449) TCGA-HU-A4GQ-01 12 54576169 54576169 C T SMUG1 Missense_Mutation p.R175H 0.23 tolerated(0.11) benign(0.086) TCGA-HU-A4GQ-01 12 54645832 54645832 T - CBX5 Frame_Shift_Del p.K106Rfs*31 0.26 TCGA-HU-A4GQ-01 12 55356472 55356472 T C TESPA1 Missense_Mutation p.T404A 0.24 tolerated_low_confidence(0.19) benign(0.009) TCGA-HU-A4GQ-01 12 55846325 55846325 T - OR6C2 Frame_Shift_Del p.L112Sfs*23 0.25 TCGA-HU-A4GQ-01 12 56622933 56622933 C T NABP2 Missense_Mutation p.P191L 0.22 deleterious(0.03) benign(0) TCGA-HU-A4GQ-01 12 56822112 56822112 G A TIMELESS Missense_Mutation p.R496C 0.26 deleterious(0.02) possibly_damaging(0.677) TCGA-HU-A4GQ-01 12 57389756 57389756 C T GPR182 Missense_Mutation p.R255C 0.26 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GQ-01 12 57860075 57860075 G - GLI1 Frame_Shift_Del p.G274Afs*6 0.30 TCGA-HU-A4GQ-01 12 57869146 57869146 G A ARHGAP9 Missense_Mutation p.R494C 0.21 deleterious(0) probably_damaging(0.927) TCGA-HU-A4GQ-01 12 5848546 5848546 G C ANO2 Missense_Mutation p.N453K 0.37 tolerated(0.06) benign(0.023) TCGA-HU-A4GQ-01 12 63541343 63541343 A - AVPR1A Frame_Shift_Del p.F351Lfs*19 0.16 TCGA-HU-A4GQ-01 12 64502736 64502736 C T SRGAP1 Missense_Mutation p.A613V 0.28 tolerated(0.6) benign(0.441) TCGA-HU-A4GQ-01 12 66935616 66935616 C T GRIP1 Missense_Mutation p.R84Q 0.22 deleterious(0) possibly_damaging(0.653) TCGA-HU-A4GQ-01 12 68595796 68595796 A G IL26 Splice_Site p.X143_splice 0.15 TCGA-HU-A4GQ-01 12 7044973 7044973 T C ATN1 Silent p.A181A 0.33 TCGA-HU-A4GQ-01 12 70963466 70963466 A G PTPRB Missense_Mutation p.V1208A 0.29 tolerated(0.51) benign(0.016) TCGA-HU-A4GQ-01 12 7177814 7177814 T C C1S Silent p.N642N 0.23 TCGA-HU-A4GQ-01 12 72068121 72068121 A G THAP2 Silent p.R70R 0.11 TCGA-HU-A4GQ-01 12 75441991 75441991 T C KCNC2 Silent p.T574T 0.27 TCGA-HU-A4GQ-01 12 75807475 75807475 C T GLIPR1L2 Missense_Mutation p.A193V 0.30 tolerated(0.05) possibly_damaging(0.813) TCGA-HU-A4GQ-01 12 78516178 78516178 C T NAV3 Missense_Mutation p.T1403M 0.19 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GQ-01 12 81242079 81242079 G A LIN7A Missense_Mutation p.T75M 0.27 deleterious(0) probably_damaging(0.981) TCGA-HU-A4GQ-01 12 81833764 81833764 G A PPFIA2 Missense_Mutation p.A211V 0.10 tolerated(0.21) benign(0.007) TCGA-HU-A4GQ-01 12 8200580 8200580 C T FOXJ2 Missense_Mutation p.P307L 0.29 tolerated(0.38) benign(0.013) TCGA-HU-A4GQ-01 12 88524079 88524079 T - CEP290 Frame_Shift_Del p.N212Tfs*14 0.21 TCGA-HU-A4GQ-01 12 91502756 91502756 T - LUM Frame_Shift_Del p.M1? 0.25 TCGA-HU-A4GQ-01 12 91539773 91539773 T - DCN 3'UTR 0.16 TCGA-HU-A4GQ-01 12 93804898 93804898 G A UBE2N Missense_Mutation p.R70C 0.24 tolerated(0.16) benign(0.023) TCGA-HU-A4GQ-01 12 94975589 94975589 G A TMCC3 Silent p.N268N 0.21 TCGA-HU-A4GQ-01 12 97045387 97045387 T C C12orf55 Missense_Mutation p.Y1632H 0.23 tolerated(1) benign(0.019) TCGA-HU-A4GQ-01 12 99447056 99447056 G A ANKS1B Missense_Mutation p.P886L 0.37 deleterious(0) probably_damaging(0.988) TCGA-HU-A4GQ-01 12 995198 995198 C T WNK1 Missense_Mutation p.S1743L 0.18 deleterious_low_confidence(0.01) benign(0.109) TCGA-HU-A4GQ-01 13 100169934 100169934 G A TM9SF2 Missense_Mutation p.A80T 0.21 tolerated(0.27) benign(0.074) TCGA-HU-A4GQ-01 13 101735208 101735208 T G NALCN Silent p.V1239V 0.21 TCGA-HU-A4GQ-01 13 103266498 103266498 A - TPP2 Frame_Shift_Del p.N116Mfs*54 0.22 TCGA-HU-A4GQ-01 13 103524621 103524621 T A BIVM-ERCC5 Missense_Mutation p.L1344I 0.17 deleterious(0.02) probably_damaging(0.953) TCGA-HU-A4GQ-01 13 111117863 111117863 G T COL4A2 Missense_Mutation p.G630C 0.18 possibly_damaging(0.888) TCGA-HU-A4GQ-01 13 113728775 113728775 C T MCF2L Silent p.D338D 0.25 TCGA-HU-A4GQ-01 13 115089868 115089870 CTC - CHAMP1 In_Frame_Del p.P185del 0.22 TCGA-HU-A4GQ-01 13 20411844 20411844 T - ZMYM5 Frame_Shift_Del p.G331Efs*14 0.30 TCGA-HU-A4GQ-01 13 21383964 21383964 C T XPO4 Missense_Mutation p.C439Y 0.17 deleterious(0) benign(0.17) TCGA-HU-A4GQ-01 13 22069321 22069322 - T MICU2 Frame_Shift_Ins p.N393Kfs*28 0.27 TCGA-HU-A4GQ-01 13 23909044 23909044 G A SACS Missense_Mutation p.R2991C 0.29 probably_damaging(0.995) TCGA-HU-A4GQ-01 13 24865020 24865020 C T SPATA13 Silent p.H1026H 0.21 TCGA-HU-A4GQ-01 13 25356068 25356068 T - RNF17 Frame_Shift_Del p.F201Lfs*23 0.18 TCGA-HU-A4GQ-01 13 25425689 25425689 T C RNF17 Silent p.G1100G 0.29 TCGA-HU-A4GQ-01 13 26620603 26620603 C A SHISA2 3'UTR 0.26 TCGA-HU-A4GQ-01 13 26621039 26621039 A T SHISA2 Missense_Mutation p.I167N 0.22 deleterious(0) probably_damaging(0.975) TCGA-HU-A4GQ-01 13 28014243 28014243 G A MTIF3 Nonsense_Mutation p.R115* 0.30 TCGA-HU-A4GQ-01 13 28143294 28143294 G A LNX2 Missense_Mutation p.P176L 0.29 deleterious(0.04) benign(0.002) TCGA-HU-A4GQ-01 13 29041262 29041262 C - FLT1 Frame_Shift_Del p.E56Kfs*12 0.25 TCGA-HU-A4GQ-01 13 33306284 33306284 C T PDS5B Missense_Mutation p.R724C 0.24 deleterious(0) possibly_damaging(0.827) TCGA-HU-A4GQ-01 13 33679649 33679649 G A STARD13 3'UTR 0.29 TCGA-HU-A4GQ-01 13 36765933 36765933 A G SOHLH2 Missense_Mutation p.C254R 0.33 tolerated(0.08) benign(0.067) TCGA-HU-A4GQ-01 13 38144790 38144790 T - POSTN Frame_Shift_Del p.K732Nfs*13 0.25 TCGA-HU-A4GQ-01 13 38211510 38211510 C T TRPC4 Missense_Mutation p.A827T 0.26 tolerated_low_confidence(0.16) benign(0.03) TCGA-HU-A4GQ-01 13 38934964 38934964 T - UFM1 3'UTR 0.28 TCGA-HU-A4GQ-01 13 39587282 39587284 AAG - PROSER1 In_Frame_Del p.S702del 0.24 TCGA-HU-A4GQ-01 13 46549464 46549464 G A ZC3H13 Nonsense_Mutation p.R808* 0.24 TCGA-HU-A4GQ-01 13 46917574 46917574 C T KIAA0226L Silent p.A645A 0.23 TCGA-HU-A4GQ-01 13 49070346 49070346 G A RCBTB2 Missense_Mutation p.A499V 0.24 deleterious(0) benign(0.02) TCGA-HU-A4GQ-01 13 49794847 49794847 C T MLNR Missense_Mutation p.T125M 0.30 deleterious(0) probably_damaging(0.985) TCGA-HU-A4GQ-01 13 49796368 49796368 C T MLNR Missense_Mutation p.A365V 0.27 deleterious(0.03) probably_damaging(0.998) TCGA-HU-A4GQ-01 13 52325544 52325544 G T WDFY2 Missense_Mutation p.R275M 0.15 deleterious(0) possibly_damaging(0.467) TCGA-HU-A4GQ-01 13 52598175 52598175 C T ALG11 Silent p.G103G 0.25 TCGA-HU-A4GQ-01 13 53042429 53042429 G A CKAP2 Missense_Mutation p.R499Q 0.20 tolerated(0.08) benign(0.049) TCGA-HU-A4GQ-01 13 53421150 53421150 C T PCDH8 Silent p.A474A 0.42 TCGA-HU-A4GQ-01 13 53422176 53422176 C T PCDH8 Silent p.A132A 0.15 TCGA-HU-A4GQ-01 13 61102729 61102729 C T TDRD3 Missense_Mutation p.S457F 0.27 tolerated(0.06) possibly_damaging(0.673) TCGA-HU-A4GQ-01 13 61102745 61102745 A T TDRD3 Silent p.V462V 0.27 TCGA-HU-A4GQ-01 13 67799464 67799464 T C PCDH9 Intron 0.28 TCGA-HU-A4GQ-01 13 67800275 67800275 C T PCDH9 Silent p.T766T 0.19 TCGA-HU-A4GQ-01 13 70681728 70681728 C - KLHL1 Frame_Shift_Del p.G35Efs*31 0.27 TCGA-HU-A4GQ-01 13 73336167 73336167 G A DIS3 Missense_Mutation p.R746C 0.22 deleterious(0) probably_damaging(0.975) TCGA-HU-A4GQ-01 13 76397790 76397790 C T LMO7 Silent p.D677D 0.20 TCGA-HU-A4GQ-01 13 77651309 77651309 G A MYCBP2 Nonsense_Mutation p.R3862* 0.32 TCGA-HU-A4GQ-01 13 78475267 78475267 A - EDNRB Frame_Shift_Del p.Y383Ifs*3 0.21 TCGA-HU-A4GQ-01 13 88328655 88328655 A G SLITRK5 Missense_Mutation p.N338D 0.21 tolerated(0.38) benign(0.045) TCGA-HU-A4GQ-01 13 92345659 92345659 G A GPC5 Missense_Mutation p.G182S 0.18 deleterious(0.04) benign(0.391) TCGA-HU-A4GQ-01 13 95364183 95364183 G A SOX21 Missense_Mutation p.R41C 0.15 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GQ-01 13 96293996 96293996 C T DZIP1 Silent p.A50A 0.19 TCGA-HU-A4GQ-01 13 96443311 96443311 T - DNAJC3 3'UTR 0.24 TCGA-HU-A4GQ-01 13 96589237 96589237 T - UGGT2 Frame_Shift_Del p.M640Wfs*7 0.20 TCGA-HU-A4GQ-01 13 97999120 97999120 C - MBNL2 Frame_Shift_Del p.A203Qfs*5 0.21 TCGA-HU-A4GQ-01 13 98669010 98669011 AA - IPO5 Frame_Shift_Del p.K859Sfs*11 0.14 TCGA-HU-A4GQ-01 13 98828808 98828808 C T RNF113B Missense_Mutation p.R228Q 0.36 tolerated(0.19) benign(0.015) TCGA-HU-A4GQ-01 13 99091389 99091389 G A FARP1 Missense_Mutation p.R791Q 0.23 deleterious(0.01) probably_damaging(0.997) TCGA-HU-A4GQ-01 13 99532924 99532924 G A DOCK9 Silent p.Y916Y 0.18 TCGA-HU-A4GQ-01 14 100406391 100406391 G A EML1 Missense_Mutation p.S816N 0.23 deleterious(0.02) benign(0.182) TCGA-HU-A4GQ-01 14 101004539 101004539 C T BEGAIN Missense_Mutation p.E517K 0.19 tolerated(0.09) benign(0.152) TCGA-HU-A4GQ-01 14 102471540 102471540 G C DYNC1H1 Missense_Mutation p.Q1800H 0.24 benign(0.036) TCGA-HU-A4GQ-01 14 102494389 102494389 C T DYNC1H1 Missense_Mutation p.P3127S 0.26 probably_damaging(0.982) TCGA-HU-A4GQ-01 14 102505836 102505836 A G DYNC1H1 Missense_Mutation p.T3850A 0.27 benign(0.004) TCGA-HU-A4GQ-01 14 102675570 102675570 C T WDR20 Missense_Mutation p.R386W 0.30 tolerated(0.18) possibly_damaging(0.582) TCGA-HU-A4GQ-01 14 103432702 103432702 G A CDC42BPB Missense_Mutation p.R832W 0.34 deleterious(0) possibly_damaging(0.816) TCGA-HU-A4GQ-01 14 104575630 104575630 G T ASPG Nonsense_Mutation p.E500* 0.43 TCGA-HU-A4GQ-01 14 104641944 104641944 C T KIF26A Missense_Mutation p.A940V 0.21 tolerated(0.55) benign(0) TCGA-HU-A4GQ-01 14 105207035 105207035 T C ADSSL1 Missense_Mutation p.F235L 0.25 deleterious(0.03) probably_damaging(0.99) TCGA-HU-A4GQ-01 14 106173670 106173670 G A IGHA1 Silent p.R299R 0.29 TCGA-HU-A4GQ-01 14 106173741 106173741 A G IGHA1 Missense_Mutation p.Y276H 0.08 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GQ-01 14 106406041 106406041 G T IGHV6-1 Missense_Mutation p.L6I 0.23 tolerated(0.07) possibly_damaging(0.578) TCGA-HU-A4GQ-01 14 106725295 106725295 C T IGHV3-23 Missense_Mutation p.R86Q 0.06 deleterious_low_confidence(0.02) benign(0.446) TCGA-HU-A4GQ-01 14 20295661 20295661 C T OR4N2 Silent p.T18T 0.19 TCGA-HU-A4GQ-01 14 20850793 20850793 G A TEP1 Silent p.L1377L 0.30 TCGA-HU-A4GQ-01 14 21464425 21464425 G A METTL17 Missense_Mutation p.A352T 0.32 tolerated(0.41) benign(0.02) TCGA-HU-A4GQ-01 14 21561363 21561363 G A ZNF219 Silent p.N31N 0.22 TCGA-HU-A4GQ-01 14 21769319 21769319 G A RPGRIP1 Missense_Mutation p.R138H 0.33 tolerated(0.52) benign(0.017) TCGA-HU-A4GQ-01 14 21861839 21861839 G A CHD8 Nonsense_Mutation p.Q2039* 0.19 TCGA-HU-A4GQ-01 14 21868737 21868737 G A CHD8 Missense_Mutation p.R1469C 0.25 deleterious(0) possibly_damaging(0.854) TCGA-HU-A4GQ-01 14 21993476 21993476 G A SALL2 Missense_Mutation p.A129V 0.18 deleterious_low_confidence(0.02) benign(0.113) TCGA-HU-A4GQ-01 14 22251499 22251499 T C TRAV7 Missense_Mutation p.V39A 0.26 tolerated(0.76) benign(0.002) TCGA-HU-A4GQ-01 14 22695116 22695116 G A TRAV36DV7 Missense_Mutation p.G103R 0.46 tolerated(0.33) benign(0.02) TCGA-HU-A4GQ-01 14 23530581 23530581 C T ACIN1 Missense_Mutation p.R1175H 0.33 probably_damaging(0.991) TCGA-HU-A4GQ-01 14 23530654 23530654 G - ACIN1 Frame_Shift_Del p.R1151Gfs*79 0.21 TCGA-HU-A4GQ-01 14 23586911 23586911 G A CEBPE Missense_Mutation p.R211W 0.25 deleterious(0) probably_damaging(0.996) TCGA-HU-A4GQ-01 14 23853752 23853752 G A MYH6 Missense_Mutation p.R1822W 0.26 deleterious(0) probably_damaging(0.988) TCGA-HU-A4GQ-01 14 24040144 24040144 G A JPH4 Missense_Mutation p.A599V 0.30 tolerated(0.34) benign(0.003) TCGA-HU-A4GQ-01 14 24523605 24523605 A G LRRC16B Missense_Mutation p.I83V 0.28 tolerated(0.66) benign(0.019) TCGA-HU-A4GQ-01 14 24642145 24642145 C - REC8 Frame_Shift_Del p.P56Rfs*22 0.28 TCGA-HU-A4GQ-01 14 24838726 24838726 C T NFATC4 Missense_Mutation p.P104L 0.26 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GQ-01 14 30066753 30066753 A G PRKD1 Missense_Mutation p.I793T 0.24 deleterious(0) probably_damaging(0.976) TCGA-HU-A4GQ-01 14 30135409 30135409 C T PRKD1 Missense_Mutation p.A137T 0.27 tolerated(0.06) benign(0.271) TCGA-HU-A4GQ-01 14 32560444 32560445 - A ARHGAP5 Frame_Shift_Ins p.P193Tfs*8 0.26 TCGA-HU-A4GQ-01 14 33291887 33291887 G A AKAP6 Missense_Mutation p.G1623D 0.24 tolerated(0.77) probably_damaging(1) TCGA-HU-A4GQ-01 14 33291932 33291932 G A AKAP6 Missense_Mutation p.R1638H 0.14 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GQ-01 14 34395095 34395095 G A EGLN3 3'UTR 0.31 TCGA-HU-A4GQ-01 14 36840934 36840934 G A DPPA3P2 RNA 0.16 TCGA-HU-A4GQ-01 14 38679790 38679790 T C SSTR1 3'UTR 0.36 TCGA-HU-A4GQ-01 14 45711241 45711241 T - MIS18BP1 Frame_Shift_Del p.N380Ifs*3 0.29 TCGA-HU-A4GQ-01 14 50623748 50623748 G A SOS2 Missense_Mutation p.R676C 0.29 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GQ-01 14 51561062 51561062 G A TRIM9 Missense_Mutation p.P199L 0.34 deleterious(0) probably_damaging(0.936) TCGA-HU-A4GQ-01 14 52494043 52494043 G A NID2 Silent p.N850N 0.40 TCGA-HU-A4GQ-01 14 52520475 52520475 G A NID2 Silent p.N417N 0.26 TCGA-HU-A4GQ-01 14 63453879 63453879 G A KCNH5 Missense_Mutation p.R154W 0.30 deleterious(0) probably_damaging(0.936) TCGA-HU-A4GQ-01 14 64519635 64519635 A - SYNE2 Frame_Shift_Del p.V3004Cfs*7 0.25 TCGA-HU-A4GQ-01 14 64681059 64681059 G A SYNE2 Missense_Mutation p.E6402K 0.04 probably_damaging(0.999) TCGA-HU-A4GQ-01 14 65054951 65054951 C T PPP1R36 Silent p.D340D 0.26 TCGA-HU-A4GQ-01 14 65543363 65543363 G A MAX Missense_Mutation p.A105V 0.26 tolerated(0.2) benign(0.006) TCGA-HU-A4GQ-01 14 69263111 69263111 G - ZFP36L1 5'Flank 0.20 TCGA-HU-A4GQ-01 14 69798253 69798253 G A GALNT16 Missense_Mutation p.A255T 0.25 tolerated(0.09) probably_damaging(0.999) TCGA-HU-A4GQ-01 14 70236006 70236006 C T SRSF5 Intron 0.40 TCGA-HU-A4GQ-01 14 70989358 70989358 A - ADAM20 Frame_Shift_Del p.L756Yfs*? 0.25 TCGA-HU-A4GQ-01 14 71575563 71575563 G A PCNX Missense_Mutation p.G2182S 0.17 tolerated_low_confidence(0.15) benign(0.12) TCGA-HU-A4GQ-01 14 71576714 71576714 G T PCNX 3'UTR 0.23 TCGA-HU-A4GQ-01 14 72191431 72191431 G A SIPA1L1 Missense_Mutation p.R1519H 0.25 deleterious(0.04) possibly_damaging(0.618) TCGA-HU-A4GQ-01 14 72818895 72818895 C T RGS6 Silent p.V59V 0.16 TCGA-HU-A4GQ-01 14 74769598 74769598 G A ABCD4 Silent p.P6P 0.32 TCGA-HU-A4GQ-01 14 74995671 74995671 C T LTBP2 Silent p.L714L 0.19 TCGA-HU-A4GQ-01 14 75376455 75376455 G A RPS6KL1 Missense_Mutation p.P354L 0.36 tolerated(0.25) benign(0) TCGA-HU-A4GQ-01 14 75516318 75516318 C T MLH3 Missense_Mutation p.R14H 0.21 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GQ-01 14 76620816 76620816 G A GPATCH2L Missense_Mutation p.R37Q 0.26 tolerated(0.28) probably_damaging(0.999) TCGA-HU-A4GQ-01 14 81744277 81744277 G A STON2 Nonsense_Mutation p.Q460* 0.27 TCGA-HU-A4GQ-01 14 90651285 90651285 G - KCNK13 Frame_Shift_Del p.V391Wfs*7 0.26 TCGA-HU-A4GQ-01 14 91247217 91247217 C A TTC7B Missense_Mutation p.A104S 0.17 tolerated(0.08) possibly_damaging(0.524) TCGA-HU-A4GQ-01 14 91671055 91671055 G A C14orf159 Missense_Mutation p.G484S 0.33 tolerated(0.11) possibly_damaging(0.866) TCGA-HU-A4GQ-01 14 91948517 91948517 G A SMEK1 Silent p.S106S 0.17 TCGA-HU-A4GQ-01 14 92472698 92472698 T - TRIP11 Frame_Shift_Del p.K541Rfs*17 0.24 TCGA-HU-A4GQ-01 14 92620755 92620756 AG - CPSF2 Frame_Shift_Del p.K400Tfs*10 0.29 TCGA-HU-A4GQ-01 14 92959869 92959869 T C SLC24A4 Missense_Mutation p.V589A 0.17 tolerated(0.17) benign(0.033) TCGA-HU-A4GQ-01 14 93813694 93813694 G A COX8C Missense_Mutation p.R27H 0.41 deleterious(0.01) benign(0.277) TCGA-HU-A4GQ-01 14 94413727 94413727 C T ASB2 Silent p.P340P 0.27 TCGA-HU-A4GQ-01 14 94578050 94578052 TCA - IFI27 In_Frame_Del p.S9del 0.30 TCGA-HU-A4GQ-01 14 95934206 95934206 G A SYNE3 Silent p.P81P 0.16 TCGA-HU-A4GQ-01 14 99641430 99641430 G C BCL11B Silent p.G581G 0.25 TCGA-HU-A4GQ-01 15 100339927 100339927 C T DNM1P46 RNA 0.33 TCGA-HU-A4GQ-01 15 102187098 102187098 T C TM2D3 Missense_Mutation p.Q111R 0.25 tolerated(0.17) benign(0.001) TCGA-HU-A4GQ-01 15 23889179 23889179 G A MAGEL2 Silent p.D634D 0.28 TCGA-HU-A4GQ-01 15 25514951 25514951 C T SNORD115-48 RNA 0.21 TCGA-HU-A4GQ-01 15 28929378 28929378 G A RP11-578F21.2 5'Flank 0.21 TCGA-HU-A4GQ-01 15 31320576 31320576 G A TRPM1 Silent p.V1101V 0.23 TCGA-HU-A4GQ-01 15 33893742 33893742 C T RYR3 Silent p.N637N 0.15 TCGA-HU-A4GQ-01 15 34444996 34444996 A - KATNBL1 Frame_Shift_Del p.S145Lfs*19 0.14 TCGA-HU-A4GQ-01 15 34640529 34640529 C A NUTM1 Missense_Mutation p.L126I 0.20 tolerated(0.19) benign(0.063) TCGA-HU-A4GQ-01 15 35236512 35236513 - A AQR Frame_Shift_Ins p.L150Sfs*2 0.22 TCGA-HU-A4GQ-01 15 41060175 41060175 C T DNAJC17 Missense_Mutation p.R293Q 0.27 tolerated(1) benign(0) TCGA-HU-A4GQ-01 15 41822179 41822179 T C RPAP1 Splice_Site p.X315_splice 0.32 TCGA-HU-A4GQ-01 15 41859622 41859622 G A TYRO3 Missense_Mutation p.C283Y 0.28 tolerated(1) benign(0.034) TCGA-HU-A4GQ-01 15 42003216 42003216 T - MGA Frame_Shift_Del p.L919Yfs*14 0.25 TCGA-HU-A4GQ-01 15 43023873 43023873 G T CDAN1 Missense_Mutation p.P562T 0.25 deleterious(0.01) probably_damaging(0.996) TCGA-HU-A4GQ-01 15 43661121 43661121 C T ZSCAN29 Missense_Mutation p.G175R 0.22 deleterious(0.02) benign(0.04) TCGA-HU-A4GQ-01 15 45444070 45444070 A G DUOX1 Splice_Site p.X1005_splice 0.23 TCGA-HU-A4GQ-01 15 45654249 45654249 C A GATM 3'UTR 0.33 TCGA-HU-A4GQ-01 15 48441562 48441562 C T MYEF2 Missense_Mutation p.G462E 0.25 deleterious(0.03) benign(0.193) TCGA-HU-A4GQ-01 15 48537040 48537040 G A SLC12A1 Missense_Mutation p.G464D 0.25 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GQ-01 15 48634180 48634180 A - DUT Intron 0.34 TCGA-HU-A4GQ-01 15 48802279 48802279 G A FBN1 Missense_Mutation p.A559V 0.21 possibly_damaging(0.789) TCGA-HU-A4GQ-01 15 48936963 48936963 G A FBN1 Missense_Mutation p.R2C 0.30 benign(0.18) TCGA-HU-A4GQ-01 15 51529065 51529066 AT - CYP19A1 Frame_Shift_Del p.I96Yfs*33 0.18 TCGA-HU-A4GQ-01 15 51857322 51857323 - A DMXL2 Frame_Shift_Ins p.L109Ffs*15 0.27 TCGA-HU-A4GQ-01 15 52488595 52488596 GA - MYO5C Frame_Shift_Del p.Q1636Gfs*14 0.14 TCGA-HU-A4GQ-01 15 54005035 54005035 G A WDR72 Silent p.C215C 0.25 TCGA-HU-A4GQ-01 15 54586097 54586097 T C UNC13C Missense_Mutation p.C1275R 0.32 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-HU-A4GQ-01 15 55621921 55621922 - T PIGB Frame_Shift_Ins p.C177Lfs*79 0.25 TCGA-HU-A4GQ-01 15 57545514 57545514 C T TCF12 Missense_Mutation p.R439W 0.05 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 15 57820963 57820963 G A CGNL1 Missense_Mutation p.A1051T 0.24 tolerated(0.3) benign(0.033) TCGA-HU-A4GQ-01 15 60792196 60792196 T C RORA Silent p.S467S 0.25 TCGA-HU-A4GQ-01 15 62304323 62304323 G T VPS13C Missense_Mutation p.P289H 0.09 deleterious(0.04) possibly_damaging(0.572) TCGA-HU-A4GQ-01 15 63069085 63069085 C T TLN2 Silent p.D1830D 0.26 TCGA-HU-A4GQ-01 15 63889923 63889925 TCC - FBXL22 In_Frame_Del p.L113del 0.22 TCGA-HU-A4GQ-01 15 64973051 64973051 C A ZNF609 Silent p.P1384P 0.22 TCGA-HU-A4GQ-01 15 65108536 65108536 C A PIF1 Missense_Mutation p.E629D 0.20 tolerated_low_confidence(0.21) benign(0.004) TCGA-HU-A4GQ-01 15 65551865 65551865 G T PARP16 Silent p.L284L 0.28 TCGA-HU-A4GQ-01 15 65627706 65627706 T C IGDCC3 Missense_Mutation p.D203G 0.25 deleterious(0) probably_damaging(0.996) TCGA-HU-A4GQ-01 15 68631954 68631954 G A ITGA11 Missense_Mutation p.A387V 0.23 deleterious(0) possibly_damaging(0.839) TCGA-HU-A4GQ-01 15 69011527 69011527 G T CORO2B Silent p.T375T 0.20 TCGA-HU-A4GQ-01 15 69732651 69732651 G A KIF23 Missense_Mutation p.R631H 0.21 deleterious(0.03) probably_damaging(0.985) TCGA-HU-A4GQ-01 15 73852107 73852107 G A C15orf60 Silent p.S217S 0.32 TCGA-HU-A4GQ-01 15 74425173 74425173 C T ISLR2 Silent p.C26C 0.17 TCGA-HU-A4GQ-01 15 74640344 74640344 C G CYP11A1 Missense_Mutation p.A108P 0.27 deleterious(0.01) probably_damaging(0.988) TCGA-HU-A4GQ-01 15 74911579 74911579 G A CLK3 Silent p.P162P 0.22 TCGA-HU-A4GQ-01 15 75120416 75120416 G A CPLX3 Missense_Mutation p.R69Q 0.33 deleterious(0) probably_damaging(0.936) TCGA-HU-A4GQ-01 15 75185605 75185607 AGA - MPI In_Frame_Del p.K207del 0.35 TCGA-HU-A4GQ-01 15 76017535 76017535 C A ODF3L1 Missense_Mutation p.L69M 0.07 tolerated(0.14) possibly_damaging(0.851) TCGA-HU-A4GQ-01 15 76496086 76496086 C T C15orf27 Silent p.S342S 0.22 TCGA-HU-A4GQ-01 15 77348183 77348183 A C TSPAN3 Missense_Mutation p.V93G 0.27 deleterious(0) probably_damaging(0.99) TCGA-HU-A4GQ-01 15 77471616 77471616 G T PEAK1 Missense_Mutation p.L885I 0.20 tolerated(0.48) possibly_damaging(0.823) TCGA-HU-A4GQ-01 15 79614413 79614413 C T TMED3 Nonsense_Mutation p.R171* 0.21 TCGA-HU-A4GQ-01 15 81565500 81565501 - T IL16 Frame_Shift_Ins p.A251Cfs*15 0.15 TCGA-HU-A4GQ-01 15 81591888 81591888 A G IL16 Missense_Mutation p.N741D 0.31 tolerated(0.31) benign(0.002) TCGA-HU-A4GQ-01 15 82336304 82336304 C T MEX3B Missense_Mutation p.G303S 0.24 tolerated(0.19) benign(0.023) TCGA-HU-A4GQ-01 15 83932176 83932176 G A BNC1 Silent p.C609C 0.29 TCGA-HU-A4GQ-01 15 85652315 85652315 A - PDE8A Frame_Shift_Del p.G358Afs*3 0.23 TCGA-HU-A4GQ-01 15 89400561 89400561 G A ACAN Missense_Mutation p.G1582E 0.22 tolerated(0.05) possibly_damaging(0.831) TCGA-HU-A4GQ-01 15 89402303 89402303 G A ACAN Missense_Mutation p.A2163T 0.23 tolerated(0.33) benign(0.353) TCGA-HU-A4GQ-01 15 89698693 89698693 C T ABHD2 Missense_Mutation p.R156W 0.24 deleterious(0) probably_damaging(0.992) TCGA-HU-A4GQ-01 15 90176438 90176438 G A KIF7 Silent p.I884I 0.22 TCGA-HU-A4GQ-01 15 91542263 91542263 G A VPS33B Missense_Mutation p.T599M 0.07 deleterious(0) probably_damaging(0.993) TCGA-HU-A4GQ-01 15 91835714 91835714 G T SV2B Missense_Mutation p.A662S 0.27 tolerated(0.88) benign(0.021) TCGA-HU-A4GQ-01 15 92988137 92988137 C T ST8SIA2 Missense_Mutation p.R274C 0.06 probably_damaging(0.985) TCGA-HU-A4GQ-01 15 99251056 99251056 C T IGF1R Silent p.F120F 0.19 TCGA-HU-A4GQ-01 15 99251189 99251189 T A IGF1R Missense_Mutation p.S165T 0.26 tolerated(0.56) benign(0.01) TCGA-HU-A4GQ-01 16 10775850 10775850 G A TEKT5 Missense_Mutation p.T288M 0.23 deleterious(0.01) possibly_damaging(0.483) TCGA-HU-A4GQ-01 16 11770033 11770033 C T SNN Missense_Mutation p.R40C 0.22 deleterious_low_confidence(0) benign(0.211) TCGA-HU-A4GQ-01 16 1400977 1400977 G A TSR3 Silent p.V119V 0.26 TCGA-HU-A4GQ-01 16 1470325 1470325 C A C16orf91 Missense_Mutation p.Q264H 0.20 deleterious_low_confidence(0.02) possibly_damaging(0.808) TCGA-HU-A4GQ-01 16 15045841 15045841 C T NPIPA1 Missense_Mutation p.L338F 0.25 tolerated_low_confidence(0.09) benign(0) TCGA-HU-A4GQ-01 16 15110036 15110036 T G PDXDC1 Missense_Mutation p.C260G 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-HU-A4GQ-01 16 15811203 15811203 G A MYH11 Silent p.A1773A 0.28 TCGA-HU-A4GQ-01 16 16232232 16232232 G A ABCC1 Missense_Mutation p.R1435H 0.38 deleterious(0.03) probably_damaging(0.988) TCGA-HU-A4GQ-01 16 1866996 1866996 C A HAGH Splice_Site p.X216_splice 0.30 TCGA-HU-A4GQ-01 16 18804394 18804394 G A ARL6IP1 3'UTR 0.40 TCGA-HU-A4GQ-01 16 18858833 18858833 G A SMG1 Nonsense_Mutation p.R1980* 0.26 TCGA-HU-A4GQ-01 16 19194968 19194968 C T SYT17 Silent p.P150P 0.15 TCGA-HU-A4GQ-01 16 19580847 19580847 C T C16orf62 Silent p.L162L 0.27 TCGA-HU-A4GQ-01 16 2025588 2025588 G A TBL3 Silent p.P288P 0.37 TCGA-HU-A4GQ-01 16 20357561 20357561 C T UMOD Missense_Mutation p.V357I 0.21 tolerated(0.42) benign(0.034) TCGA-HU-A4GQ-01 16 21147818 21147818 A G DNAH3 Missense_Mutation p.L238P 0.31 deleterious(0) possibly_damaging(0.691) TCGA-HU-A4GQ-01 16 2120494 2120494 G A TSC2 Missense_Mutation p.R585H 0.26 deleterious(0) possibly_damaging(0.871) TCGA-HU-A4GQ-01 16 2124374 2124374 G A TSC2 Silent p.L843L 0.22 TCGA-HU-A4GQ-01 16 2140904 2140904 A T PKD1 Missense_Mutation p.L3995H 0.38 probably_damaging(0.999) TCGA-HU-A4GQ-01 16 2158371 2158371 C T PKD1 Missense_Mutation p.R2266H 0.23 probably_damaging(1) TCGA-HU-A4GQ-01 16 21623995 21623995 C T METTL9 Silent p.C65C 0.31 TCGA-HU-A4GQ-01 16 22358598 22358598 C T CDR2 Silent p.T351T 0.33 TCGA-HU-A4GQ-01 16 2285362 2285362 C - E4F1 Frame_Shift_Del p.E717Rfs*3 0.25 TCGA-HU-A4GQ-01 16 23080440 23080440 C T USP31 Missense_Mutation p.D996N 0.40 tolerated_low_confidence(0.1) possibly_damaging(0.57) TCGA-HU-A4GQ-01 16 23391462 23391462 G A SCNN1B Missense_Mutation p.R505H 0.29 deleterious(0) probably_damaging(0.996) TCGA-HU-A4GQ-01 16 2347360 2347360 C A ABCA3 Missense_Mutation p.G745W 0.28 deleterious(0.01) probably_damaging(1) TCGA-HU-A4GQ-01 16 23646981 23646981 T - PALB2 Frame_Shift_Del p.M296* 0.22 TCGA-HU-A4GQ-01 16 23700888 23700888 G A PLK1 Missense_Mutation p.R500H 0.17 deleterious(0.01) benign(0.245) TCGA-HU-A4GQ-01 16 24920325 24920325 C T SLC5A11 Missense_Mutation p.H520Y 0.21 deleterious(0) probably_damaging(0.98) TCGA-HU-A4GQ-01 16 2546162 2546162 G T RP11-20I23.1 Nonsense_Mutation p.G5* 0.20 TCGA-HU-A4GQ-01 16 2577787 2577787 G T AMDHD2 Missense_Mutation p.E143D 0.24 deleterious(0.01) probably_damaging(1) TCGA-HU-A4GQ-01 16 27448866 27448866 G A IL21R Silent p.S70S 0.24 TCGA-HU-A4GQ-01 16 27974491 27974491 G A GSG1L Missense_Mutation p.P128L 0.31 deleterious(0) probably_damaging(0.949) TCGA-HU-A4GQ-01 16 2811591 2811591 G A SRRM2 Silent p.P354P 0.23 TCGA-HU-A4GQ-01 16 28133060 28133060 C T XPO6 Missense_Mutation p.G597E 0.31 deleterious(0) possibly_damaging(0.886) TCGA-HU-A4GQ-01 16 28488849 28488849 G A CLN3 Silent p.C435C 0.21 TCGA-HU-A4GQ-01 16 28906196 28906196 C A ATP2A1 Silent p.T447T 0.42 TCGA-HU-A4GQ-01 16 28975083 28975083 C T NFATC2IP Missense_Mutation p.R387W 0.26 deleterious(0.02) possibly_damaging(0.862) TCGA-HU-A4GQ-01 16 2980817 2980817 G - FLYWCH1 Frame_Shift_Del p.E244Rfs*9 0.17 TCGA-HU-A4GQ-01 16 2983439 2983439 G A FLYWCH1 Missense_Mutation p.V368M 0.33 tolerated(0.1) benign(0.196) TCGA-HU-A4GQ-01 16 30094825 30094826 TG - PPP4C Frame_Shift_Del p.W140Afs*5 0.19 TCGA-HU-A4GQ-01 16 30196549 30196549 C T CORO1A Missense_Mutation p.R7C 0.29 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GQ-01 16 30409115 30409115 C T ZNF48 Missense_Mutation p.R182W 0.30 deleterious(0) probably_damaging(0.973) TCGA-HU-A4GQ-01 16 30593992 30593992 G A ZNF785 Silent p.R369R 0.27 TCGA-HU-A4GQ-01 16 30596523 30596523 A G ZNF785 Missense_Mutation p.V85A 0.21 tolerated(1) benign(0.001) TCGA-HU-A4GQ-01 16 3076568 3076568 C A THOC6 Missense_Mutation p.L155I 0.29 tolerated(0.12) possibly_damaging(0.486) TCGA-HU-A4GQ-01 16 30777709 30777709 C T RNF40 Missense_Mutation p.R375W 0.17 deleterious(0) possibly_damaging(0.891) TCGA-HU-A4GQ-01 16 30975995 30975995 G A SETD1A Missense_Mutation p.R311H 0.35 probably_damaging(0.964) TCGA-HU-A4GQ-01 16 31087907 31087907 A G ZNF646 Missense_Mutation p.M88V 0.25 tolerated(0.18) probably_damaging(0.943) TCGA-HU-A4GQ-01 16 31927101 31927101 C T ZNF267 Missense_Mutation p.R511W 0.20 tolerated(0.08) possibly_damaging(0.748) TCGA-HU-A4GQ-01 16 3586107 3586108 - T CLUAP1 Intron 0.28 TCGA-HU-A4GQ-01 16 3633486 3633486 G A SLX4 Missense_Mutation p.R1589C 0.29 deleterious(0) probably_damaging(0.996) TCGA-HU-A4GQ-01 16 3712930 3712930 T C TRAP1 Missense_Mutation p.M583V 0.27 tolerated(0.5) benign(0.007) TCGA-HU-A4GQ-01 16 4745111 4745111 T C NUDT16L1 Silent p.V189V 0.25 TCGA-HU-A4GQ-01 16 47497823 47497823 G A PHKB Intron 0.23 TCGA-HU-A4GQ-01 16 4790235 4790235 G A C16orf71 Missense_Mutation p.G120R 0.20 tolerated(0.15) probably_damaging(0.999) TCGA-HU-A4GQ-01 16 4803010 4803010 C T ZNF500 Silent p.P270P 0.24 TCGA-HU-A4GQ-01 16 4925234 4925234 C T UBN1 Silent p.S941S 0.36 TCGA-HU-A4GQ-01 16 49671250 49671250 G T ZNF423 Missense_Mutation p.P605T 0.25 deleterious(0.01) probably_damaging(0.926) TCGA-HU-A4GQ-01 16 49764836 49764836 C T ZNF423 Silent p.A41A 0.26 TCGA-HU-A4GQ-01 16 50348306 50348306 G A ADCY7 Missense_Mutation p.R987H 0.20 deleterious(0) probably_damaging(0.987) TCGA-HU-A4GQ-01 16 51171055 51171055 C T SALL1 Missense_Mutation p.V1315M 0.25 tolerated(0.42) benign(0.007) TCGA-HU-A4GQ-01 16 51173598 51173598 G A SALL1 Silent p.D845D 0.34 TCGA-HU-A4GQ-01 16 53528485 53528485 C T AKTIP Silent p.P149P 0.23 TCGA-HU-A4GQ-01 16 55358938 55358938 C T IRX6 5'UTR 0.20 TCGA-HU-A4GQ-01 16 55539369 55539369 C A MMP2 3'UTR 0.22 TCGA-HU-A4GQ-01 16 55584912 55584912 G A LPCAT2 Silent p.A371A 0.35 TCGA-HU-A4GQ-01 16 55907790 55907790 G A CES5A Missense_Mutation p.A107V 0.31 deleterious(0.03) possibly_damaging(0.676) TCGA-HU-A4GQ-01 16 57552039 57552039 C T CCDC102A Missense_Mutation p.A397T 0.26 tolerated(0.11) benign(0.05) TCGA-HU-A4GQ-01 16 57965635 57965635 G A CNGB1 Missense_Mutation p.A507V 0.41 tolerated(0.12) benign(0.168) TCGA-HU-A4GQ-01 16 58314489 58314489 G A PRSS54 Missense_Mutation p.S276F 0.37 tolerated(0.1) benign(0.04) TCGA-HU-A4GQ-01 16 61689414 61689414 G A CDH8 Silent p.G622G 0.31 TCGA-HU-A4GQ-01 16 66600642 66600642 G A CMTM1 Missense_Mutation p.A76T 0.37 tolerated(0.19) probably_damaging(0.913) TCGA-HU-A4GQ-01 16 66783190 66783190 G T DYNC1LI2 Missense_Mutation p.L70I 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-HU-A4GQ-01 16 67200492 67200492 C T HSF4 Missense_Mutation p.A198V 0.16 deleterious(0) benign(0.125) TCGA-HU-A4GQ-01 16 67261016 67261016 C T TMEM208 5'UTR 0.24 TCGA-HU-A4GQ-01 16 67428950 67428950 G A ZDHHC1 Silent p.G395G 0.25 TCGA-HU-A4GQ-01 16 67679931 67679931 C T RLTPR Missense_Mutation p.T66M 0.25 deleterious(0) probably_damaging(0.961) TCGA-HU-A4GQ-01 16 67697911 67697911 G A ENKD1 Missense_Mutation p.R170C 0.38 deleterious(0.02) probably_damaging(0.959) TCGA-HU-A4GQ-01 16 67771937 67771937 A G RANBP10 Silent p.G190G 0.31 TCGA-HU-A4GQ-01 16 67865769 67865769 G A CENPT Silent p.L137L 0.38 TCGA-HU-A4GQ-01 16 68055915 68055915 T C DDX28 Silent p.S397S 0.25 TCGA-HU-A4GQ-01 16 68266193 68266193 T C ESRP2 Splice_Site p.X319_splice 0.25 TCGA-HU-A4GQ-01 16 68289855 68289855 G - PLA2G15 Frame_Shift_Del p.G232Afs*23 0.22 TCGA-HU-A4GQ-01 16 68934403 68934404 - T TANGO6 Frame_Shift_Ins p.L484Sfs*7 0.24 TCGA-HU-A4GQ-01 16 69143820 69143820 G A HAS3 Silent p.V174V 0.35 TCGA-HU-A4GQ-01 16 69373130 69373130 G T COG8 Missense_Mutation p.A109E 0.30 tolerated(1) benign(0.004) TCGA-HU-A4GQ-01 16 69401095 69401095 G A TERF2 Missense_Mutation p.R277W 0.27 deleterious(0.01) possibly_damaging(0.549) TCGA-HU-A4GQ-01 16 70514956 70514956 C T COG4 Missense_Mutation p.R776Q 0.29 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 16 71571193 71571193 C T CHST4 Missense_Mutation p.R205W 0.18 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 16 717673 717673 T C WDR90 3'UTR 0.38 TCGA-HU-A4GQ-01 16 71798617 71798617 G A AP1G1 Missense_Mutation p.R254W 0.06 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 16 72821567 72821567 G A ZFHX3 Silent p.S3536S 0.36 TCGA-HU-A4GQ-01 16 72827364 72827364 G A ZFHX3 Missense_Mutation p.R3073C 0.23 unknown(0) TCGA-HU-A4GQ-01 16 735396 735396 C T WDR24 Missense_Mutation p.R627H 0.38 tolerated(0.41) benign(0.003) TCGA-HU-A4GQ-01 16 74444925 74444925 C T CLEC18B Missense_Mutation p.G331D 0.12 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-HU-A4GQ-01 16 74760135 74760135 A G FA2H Missense_Mutation p.S201P 0.32 deleterious(0.03) benign(0.013) TCGA-HU-A4GQ-01 16 75269703 75269703 G A BCAR1 Missense_Mutation p.P411L 0.27 deleterious(0.04) probably_damaging(0.999) TCGA-HU-A4GQ-01 16 75513514 75513514 C T CHST6 Silent p.E71E 0.32 TCGA-HU-A4GQ-01 16 76573711 76573711 A G CNTNAP4 Missense_Mutation p.I1033V 0.32 tolerated(1) benign(0.001) TCGA-HU-A4GQ-01 16 7714948 7714948 G A RBFOX1 Intron 0.27 TCGA-HU-A4GQ-01 16 81078356 81078356 A G ATMIN Missense_Mutation p.I751M 0.08 tolerated(0.16) benign(0.017) TCGA-HU-A4GQ-01 16 81712200 81712200 C T CMIP Missense_Mutation p.T452M 0.43 tolerated(0.13) benign(0.038) TCGA-HU-A4GQ-01 16 840568 840568 C A CHTF18 Missense_Mutation p.P266T 0.33 tolerated(0.24) benign(0.011) TCGA-HU-A4GQ-01 16 84256290 84256290 G A KCNG4 Missense_Mutation p.R365C 0.28 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GQ-01 16 84328483 84328483 C T WFDC1 5'UTR 0.24 TCGA-HU-A4GQ-01 16 84879541 84879541 G A CRISPLD2 Intron 0.40 TCGA-HU-A4GQ-01 16 849007 849007 C T GNG13 Missense_Mutation p.R24Q 0.36 deleterious(0) probably_damaging(0.968) TCGA-HU-A4GQ-01 16 85936589 85936589 A T IRF8 Intron 0.31 TCGA-HU-A4GQ-01 16 86544707 86544707 G A FOXF1 Missense_Mutation p.G178S 0.33 tolerated(0.84) benign(0.005) TCGA-HU-A4GQ-01 16 87364948 87364948 C T FBXO31 Silent p.P522P 0.15 TCGA-HU-A4GQ-01 16 87445990 87445990 C T ZCCHC14 Silent p.S642S 0.27 TCGA-HU-A4GQ-01 16 89354947 89354947 C T ANKRD11 Missense_Mutation p.G245R 0.44 probably_damaging(0.999) TCGA-HU-A4GQ-01 16 89927101 89927101 C T SPIRE2 Silent p.P491P 0.22 TCGA-HU-A4GQ-01 17 10212618 10212618 C T MYH13 Missense_Mutation p.R1701Q 0.29 deleterious(0.01) possibly_damaging(0.673) TCGA-HU-A4GQ-01 17 10303724 10303724 C T MYH8 Missense_Mutation p.A1240T 0.26 tolerated(0.64) benign(0.001) TCGA-HU-A4GQ-01 17 10438444 10438444 C T MYH2 Missense_Mutation p.R709H 0.22 deleterious(0) possibly_damaging(0.862) TCGA-HU-A4GQ-01 17 10538718 10538718 C T MYH3 Missense_Mutation p.A1380T 0.25 tolerated(0.05) probably_damaging(0.994) TCGA-HU-A4GQ-01 17 1370578 1370578 C T MYO1C Silent p.S1041S 0.20 TCGA-HU-A4GQ-01 17 15134388 15134388 A G PMP22 Missense_Mutation p.V110A 0.14 tolerated(0.11) probably_damaging(0.999) TCGA-HU-A4GQ-01 17 1580395 1580395 G A PRPF8 Missense_Mutation p.R686W 0.06 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 17 16321122 16321122 A G TRPV2 Missense_Mutation p.D47G 0.22 tolerated(0.14) benign(0.437) TCGA-HU-A4GQ-01 17 1657536 1657536 C T SERPINF2 Missense_Mutation p.A395V 0.26 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GQ-01 17 1673293 1673293 G A SERPINF1 Missense_Mutation p.V78M 0.32 deleterious(0) probably_damaging(0.992) TCGA-HU-A4GQ-01 17 17394661 17394661 G A MED9 Missense_Mutation p.R98H 0.34 deleterious(0.01) probably_damaging(1) TCGA-HU-A4GQ-01 17 18023437 18023437 G A MYO15A Silent p.A441A 0.19 TCGA-HU-A4GQ-01 17 18061119 18061119 C T MYO15A Nonsense_Mutation p.Q2958* 0.18 TCGA-HU-A4GQ-01 17 18167126 18167126 G A MIEF2 Missense_Mutation p.R149H 0.29 tolerated(1) benign(0.001) TCGA-HU-A4GQ-01 17 18181478 18181478 G A TOP3A Missense_Mutation p.H780Y 0.24 tolerated(1) benign(0.001) TCGA-HU-A4GQ-01 17 18219833 18219833 A G SMCR8 Missense_Mutation p.I244V 0.18 tolerated(0.15) probably_damaging(0.997) TCGA-HU-A4GQ-01 17 18286168 18286168 G A EVPLL Silent p.P167P 0.36 TCGA-HU-A4GQ-01 17 18881428 18881428 G T FAM83G Silent p.A517A 0.21 TCGA-HU-A4GQ-01 17 1961293 1961293 G A HIC1 Missense_Mutation p.V456M 0.33 deleterious(0.02) probably_damaging(1) TCGA-HU-A4GQ-01 17 19643782 19643782 G A ALDH3A1 Silent p.Y272Y 0.24 TCGA-HU-A4GQ-01 17 19720076 19720076 G A ULK2 Missense_Mutation p.S361L 0.21 deleterious(0.04) benign(0.283) TCGA-HU-A4GQ-01 17 25630429 25630429 C T WSB1 Silent p.S82S 0.25 TCGA-HU-A4GQ-01 17 2579802 2579802 A - PAFAH1B1 Frame_Shift_Del p.S304Vfs*29 0.27 TCGA-HU-A4GQ-01 17 2601712 2601713 - C CLUH Frame_Shift_Ins p.D442Gfs*99 0.23 TCGA-HU-A4GQ-01 17 26942731 26942731 T A KIAA0100 Missense_Mutation p.D2159V 0.29 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 17 27086258 27086258 G - FAM222B Frame_Shift_Del p.P240Rfs*3 0.29 TCGA-HU-A4GQ-01 17 27086286 27086286 G A FAM222B Missense_Mutation p.R231W 0.12 tolerated(0.06) probably_damaging(0.997) TCGA-HU-A4GQ-01 17 27448654 27448654 G A MYO18A Missense_Mutation p.R428C 0.44 deleterious(0.01) probably_damaging(0.988) TCGA-HU-A4GQ-01 17 27614057 27614057 G A NUFIP2 Missense_Mutation p.P319S 0.21 tolerated(0.29) benign(0.077) TCGA-HU-A4GQ-01 17 27825386 27825386 T C TAOK1 Silent p.S350S 0.28 TCGA-HU-A4GQ-01 17 29253876 29253876 A C ADAP2 Missense_Mutation p.K86T 0.20 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 17 292996 292996 C T FAM101B Missense_Mutation p.A132T 0.29 tolerated(0.6) benign(0.002) TCGA-HU-A4GQ-01 17 29687688 29687688 A G NF1 Missense_Mutation p.M2782V 0.29 tolerated_low_confidence(0.1) possibly_damaging(0.448) TCGA-HU-A4GQ-01 17 33289326 33289326 G A ZNF830 Silent p.P247P 0.18 TCGA-HU-A4GQ-01 17 33331364 33331364 C T LIG3 Missense_Mutation p.R957C 0.21 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 17 35295405 35295405 G A LHX1 5'UTR 0.36 TCGA-HU-A4GQ-01 17 36485820 36485820 T - GPR179 Frame_Shift_Del p.N1211Tfs*69 0.27 TCGA-HU-A4GQ-01 17 36520674 36520674 G A SOCS7 Missense_Mutation p.R298Q 0.24 deleterious_low_confidence(0.03) possibly_damaging(0.844) TCGA-HU-A4GQ-01 17 36708254 36708254 G - SRCIN1 Frame_Shift_Del p.S866Afs*4 0.23 TCGA-HU-A4GQ-01 17 36865453 36865453 C T MLLT6 Missense_Mutation p.R128W 0.28 deleterious(0) unknown(0) TCGA-HU-A4GQ-01 17 36916769 36916769 G A PSMB3 Missense_Mutation p.G128S 0.33 deleterious(0) possibly_damaging(0.877) TCGA-HU-A4GQ-01 17 37809851 37809851 G T STARD3 Missense_Mutation p.G23C 0.21 deleterious(0.01) possibly_damaging(0.627) TCGA-HU-A4GQ-01 17 38785239 38785239 G A SMARCE1 Missense_Mutation p.T345I 0.27 tolerated(0.16) benign(0.429) TCGA-HU-A4GQ-01 17 38955184 38955184 T C KRT28 Missense_Mutation p.D173G 0.20 deleterious(0) probably_damaging(0.933) TCGA-HU-A4GQ-01 17 39034445 39034445 T C KRT20 Missense_Mutation p.E364G 0.24 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 17 39535427 39535427 C T KRT34 Missense_Mutation p.R335Q 0.25 deleterious(0.01) probably_damaging(0.947) TCGA-HU-A4GQ-01 17 39659656 39659656 G A KRT13 Silent p.A206A 0.25 TCGA-HU-A4GQ-01 17 39728026 39728026 G A KRT9 Silent p.Y73Y 0.29 TCGA-HU-A4GQ-01 17 40370880 40370880 C T STAT5B Missense_Mutation p.E284K 0.22 deleterious(0.02) possibly_damaging(0.857) TCGA-HU-A4GQ-01 17 40705464 40705464 C T HSD17B1 Silent p.N91N 0.20 TCGA-HU-A4GQ-01 17 40721591 40721591 G A MLX Missense_Mutation p.R202H 0.21 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GQ-01 17 40947524 40947524 G A WNK4 Missense_Mutation p.A1003T 0.31 tolerated(0.12) possibly_damaging(0.852) TCGA-HU-A4GQ-01 17 40970692 40970692 C A BECN1 Missense_Mutation p.G120W 0.30 deleterious(0) probably_damaging(0.97) TCGA-HU-A4GQ-01 17 41290766 41290766 G T NBR2 RNA 0.18 TCGA-HU-A4GQ-01 17 41835927 41835927 G A SOST Silent p.N61N 0.43 TCGA-HU-A4GQ-01 17 42169769 42169769 A G HDAC5 Missense_Mutation p.I301T 0.27 tolerated(0.58) benign(0.157) TCGA-HU-A4GQ-01 17 42272170 42272170 G A ATXN7L3 Nonsense_Mutation p.R242* 0.30 TCGA-HU-A4GQ-01 17 42476843 42476843 G A GPATCH8 Missense_Mutation p.R868C 0.19 deleterious_low_confidence(0.02) unknown(0) TCGA-HU-A4GQ-01 17 42501727 42501727 G T GPATCH8 Missense_Mutation p.A161E 0.19 deleterious(0) probably_damaging(0.985) TCGA-HU-A4GQ-01 17 43004359 43004359 C T KIF18B Silent p.A788A 0.27 TCGA-HU-A4GQ-01 17 43011405 43011405 G A KIF18B Silent p.L316L 0.18 TCGA-HU-A4GQ-01 17 43214761 43214761 G A ACBD4 Missense_Mutation p.D148N 0.25 deleterious_low_confidence(0.04) benign(0.084) TCGA-HU-A4GQ-01 17 45727599 45727599 G A KPNB1 5'UTR 0.26 TCGA-HU-A4GQ-01 17 45755696 45755696 A G KPNB1 Missense_Mutation p.Y757C 0.34 deleterious(0) probably_damaging(0.985) TCGA-HU-A4GQ-01 17 45891906 45891907 - C OSBPL7 Frame_Shift_Ins p.A445Sfs*2 0.16 TCGA-HU-A4GQ-01 17 47587858 47587858 C A NGFR Missense_Mutation p.P218H 0.08 deleterious(0) possibly_damaging(0.72) TCGA-HU-A4GQ-01 17 4795504 4795504 C T MINK1 Missense_Mutation p.R688W 0.25 deleterious(0.01) probably_damaging(0.936) TCGA-HU-A4GQ-01 17 48155490 48155490 G A ITGA3 Splice_Site p.X740_splice 0.31 TCGA-HU-A4GQ-01 17 4837373 4837373 A - GP1BA Frame_Shift_Del p.T494Pfs*59 0.26 TCGA-HU-A4GQ-01 17 48538177 48538177 G A ACSF2 Missense_Mutation p.A90T 0.23 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GQ-01 17 4858836 4858836 G A ENO3 Missense_Mutation p.A268T 0.20 tolerated_low_confidence(0.14) benign(0.001) TCGA-HU-A4GQ-01 17 48598516 48598516 G A MYCBPAP Missense_Mutation p.R364Q 0.18 tolerated(0.06) probably_damaging(0.978) TCGA-HU-A4GQ-01 17 48627954 48627954 C T SPATA20 Missense_Mutation p.R386W 0.27 deleterious(0) probably_damaging(0.992) TCGA-HU-A4GQ-01 17 48696324 48696324 G A CACNA1G Silent p.A1912A 0.30 TCGA-HU-A4GQ-01 17 49074033 49074033 G A SPAG9 Missense_Mutation p.R621C 0.28 deleterious(0) probably_damaging(0.95) TCGA-HU-A4GQ-01 17 5392823 5392823 A G MIS12 3'UTR 0.21 TCGA-HU-A4GQ-01 17 55028016 55028016 T - COIL Frame_Shift_Del p.K196Rfs*13 0.32 TCGA-HU-A4GQ-01 17 56435161 56435161 C - RNF43 Frame_Shift_Del p.G659Vfs*41 0.18 TCGA-HU-A4GQ-01 17 56585913 56585913 C T MTMR4 Missense_Mutation p.R156H 0.15 tolerated(0.25) probably_damaging(0.931) TCGA-HU-A4GQ-01 17 56650604 56650604 G T TEX14 Missense_Mutation p.A1196D 0.24 deleterious(0.01) benign(0.187) TCGA-HU-A4GQ-01 17 57126657 57126657 C T TRIM37 Missense_Mutation p.R471Q 0.34 deleterious_low_confidence(0.02) benign(0.072) TCGA-HU-A4GQ-01 17 57287657 57287657 A G SMG8 Missense_Mutation p.H82R 0.27 tolerated_low_confidence(0.54) benign(0) TCGA-HU-A4GQ-01 17 58260599 58260599 C T USP32 Silent p.S1350S 0.22 TCGA-HU-A4GQ-01 17 61498449 61498449 C T TANC2 Silent p.S1702S 0.26 TCGA-HU-A4GQ-01 17 61600767 61600767 G A KCNH6 5'UTR 0.33 TCGA-HU-A4GQ-01 17 61776056 61776056 G A LIMD2 Silent p.A80A 0.15 TCGA-HU-A4GQ-01 17 61776626 61776626 G T LIMD2 Silent p.T11T 0.14 TCGA-HU-A4GQ-01 17 62144199 62144199 G T ERN1 Missense_Mutation p.P225H 0.30 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GQ-01 17 6358690 6358690 G A PITPNM3 Missense_Mutation p.R965C 0.27 deleterious_low_confidence(0) possibly_damaging(0.836) TCGA-HU-A4GQ-01 17 6374567 6374567 C T PITPNM3 Missense_Mutation p.R513H 0.39 deleterious(0.04) benign(0.013) TCGA-HU-A4GQ-01 17 6406880 6406880 G C PITPNM3 Missense_Mutation p.P81A 0.31 tolerated(0.25) benign(0.001) TCGA-HU-A4GQ-01 17 64683346 64683346 G A PRKCA Missense_Mutation p.R216H 0.23 deleterious(0.04) benign(0.026) TCGA-HU-A4GQ-01 17 65052273 65052273 C A CACNG1 Silent p.A185A 0.17 TCGA-HU-A4GQ-01 17 65163599 65163599 G A HELZ Missense_Mutation p.R582W 0.25 deleterious(0) possibly_damaging(0.889) TCGA-HU-A4GQ-01 17 6607255 6607255 G A SLC13A5 Silent p.S163S 0.20 TCGA-HU-A4GQ-01 17 67012397 67012397 A - ABCA9 Frame_Shift_Del p.F1012Lfs*31 0.25 TCGA-HU-A4GQ-01 17 6927811 6927811 G A BCL6B Missense_Mutation p.E165K 0.29 deleterious(0.01) probably_damaging(0.99) TCGA-HU-A4GQ-01 17 70845904 70845904 G A SLC39A11 Missense_Mutation p.A164V 0.20 tolerated(0.43) benign(0.003) TCGA-HU-A4GQ-01 17 71232985 71232986 CT - C17orf80 Frame_Shift_Del p.L456Sfs*114 0.14 TCGA-HU-A4GQ-01 17 71282522 71282522 C T CDC42EP4 Missense_Mutation p.V40I 0.24 tolerated(0.06) probably_damaging(0.999) TCGA-HU-A4GQ-01 17 71346417 71346417 G A SDK2 Silent p.S1999S 0.20 TCGA-HU-A4GQ-01 17 71426725 71426726 - G SDK2 Frame_Shift_Ins p.Q503Pfs*115 0.24 TCGA-HU-A4GQ-01 17 72205355 72205355 G A RPL38 Missense_Mutation p.V32M 0.21 tolerated(0.12) benign(0.409) TCGA-HU-A4GQ-01 17 72877353 72877353 G T FADS6 Missense_Mutation p.L191M 0.33 deleterious(0.02) probably_damaging(0.93) TCGA-HU-A4GQ-01 17 72916757 72916757 C T USH1G Silent p.P58P 0.23 TCGA-HU-A4GQ-01 17 73094194 73094194 C T SLC16A5 Silent p.G87G 0.22 TCGA-HU-A4GQ-01 17 73094227 73094229 CTT - SLC16A5 In_Frame_Del p.F99del 0.28 TCGA-HU-A4GQ-01 17 73100340 73100340 C G SLC16A5 Intron 0.44 TCGA-HU-A4GQ-01 17 7329095 7329095 C T C17orf74 Silent p.L30L 0.26 TCGA-HU-A4GQ-01 17 73484108 73484108 T C KIAA0195 Missense_Mutation p.Y169H 0.29 deleterious(0) probably_damaging(0.934) TCGA-HU-A4GQ-01 17 73491063 73491063 C - KIAA0195 Frame_Shift_Del p.S895Pfs*13 0.25 TCGA-HU-A4GQ-01 17 73699916 73699916 A G SAP30BP Missense_Mutation p.E193G 0.20 deleterious(0.01) probably_damaging(1) TCGA-HU-A4GQ-01 17 74035930 74035930 A G SRP68 Missense_Mutation p.F581L 0.25 deleterious(0.04) probably_damaging(1) TCGA-HU-A4GQ-01 17 74073109 74073109 C T GALR2 Missense_Mutation p.A254V 0.24 tolerated(1) benign(0.096) TCGA-HU-A4GQ-01 17 7534615 7534615 G A SHBG Missense_Mutation p.R164H 0.26 tolerated(0.43) benign(0.11) TCGA-HU-A4GQ-01 17 75398671 75398671 A T SEPT9 Missense_Mutation p.S203C 0.19 tolerated_low_confidence(0.18) benign(0.155) TCGA-HU-A4GQ-01 17 7577551 7577551 C A TP53 Missense_Mutation p.G244C 0.29 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 17 76129604 76129604 T C TMC8 Missense_Mutation p.F217L 0.28 tolerated(0.71) probably_damaging(0.979) TCGA-HU-A4GQ-01 17 76458959 76458959 G A DNAH17 Silent p.N3033N 0.27 TCGA-HU-A4GQ-01 17 76498731 76498731 G A DNAH17 Missense_Mutation p.A1700V 0.32 possibly_damaging(0.844) TCGA-HU-A4GQ-01 17 7662800 7662800 C T DNAH2 Missense_Mutation p.R837C 0.30 probably_damaging(0.973) TCGA-HU-A4GQ-01 17 7681430 7681430 G A DNAH2 Silent p.T1761T 0.22 TCGA-HU-A4GQ-01 17 76817087 76817087 C T USP36 Missense_Mutation p.A272T 0.19 tolerated(0.21) probably_damaging(0.922) TCGA-HU-A4GQ-01 17 7710838 7710838 C T DNAH2 Silent p.N3221N 0.38 TCGA-HU-A4GQ-01 17 7749463 7749463 C T KDM6B Missense_Mutation p.R102W 0.15 unknown(0) TCGA-HU-A4GQ-01 17 77984457 77984457 G A TBC1D16 Missense_Mutation p.A94V 0.14 tolerated(0.15) probably_damaging(0.999) TCGA-HU-A4GQ-01 17 7798700 7798700 G A CHD3 Missense_Mutation p.R575Q 0.29 benign(0.238) TCGA-HU-A4GQ-01 17 78326795 78326795 T C RNF213 Silent p.S3453S 0.24 TCGA-HU-A4GQ-01 17 78357574 78357574 T C RNF213 Missense_Mutation p.V4723A 0.35 benign(0.001) TCGA-HU-A4GQ-01 17 79428094 79428094 C T RP11-1055B8.7 Silent p.R2135R 0.31 TCGA-HU-A4GQ-01 17 79661855 79661855 C A HGS Missense_Mutation p.A316E 0.29 tolerated(0.11) probably_damaging(0.989) TCGA-HU-A4GQ-01 17 79803764 79803764 T - P4HB Frame_Shift_Del p.N387Tfs*118 0.27 TCGA-HU-A4GQ-01 17 79826687 79826687 G - ARHGDIA 3'UTR 0.27 TCGA-HU-A4GQ-01 17 80013901 80013901 A G GPS1 Missense_Mutation p.I327V 0.24 tolerated(1) benign(0.001) TCGA-HU-A4GQ-01 17 8020176 8020176 G A ALOXE3 Silent p.T222T 0.27 TCGA-HU-A4GQ-01 17 80680764 80680764 T C FN3KRP Splice_Site p.X156_splice 0.33 TCGA-HU-A4GQ-01 17 8110190 8110190 G A AURKB Missense_Mutation p.R139C 0.29 deleterious(0.01) benign(0.422) TCGA-HU-A4GQ-01 17 8215771 8215771 G A ARHGEF15 Silent p.L138L 0.23 TCGA-HU-A4GQ-01 17 8452089 8452089 T C MYH10 Silent p.E312E 0.17 TCGA-HU-A4GQ-01 17 9631535 9631535 G T USP43 Missense_Mutation p.R867M 0.30 deleterious(0.03) benign(0.428) TCGA-HU-A4GQ-01 17 9792733 9792733 G A GLP2R Missense_Mutation p.R458H 0.24 tolerated(0.81) benign(0.002) TCGA-HU-A4GQ-01 18 10549069 10549069 G A NAPG Silent p.P257P 0.24 TCGA-HU-A4GQ-01 18 13095595 13095595 G A CEP192 Silent p.A2116A 0.23 TCGA-HU-A4GQ-01 18 13387540 13387540 C A LDLRAD4 5'UTR 0.38 TCGA-HU-A4GQ-01 18 13645411 13645411 G A LDLRAD4 Missense_Mutation p.G226R 0.22 deleterious_low_confidence(0) probably_damaging(1) TCGA-HU-A4GQ-01 18 13826187 13826187 C T MC5R Silent p.Y141Y 0.16 TCGA-HU-A4GQ-01 18 19154750 19154750 T - ESCO1 Frame_Shift_Del p.S19Vfs*17 0.31 TCGA-HU-A4GQ-01 18 21115621 21115621 C T NPC1 Missense_Mutation p.D1097N 0.14 deleterious(0.03) probably_damaging(0.954) TCGA-HU-A4GQ-01 18 21461971 21461971 C T LAMA3 Silent p.H1728H 0.33 TCGA-HU-A4GQ-01 18 22804544 22804544 G A ZNF521 Missense_Mutation p.T1113M 0.32 tolerated(0.11) possibly_damaging(0.855) TCGA-HU-A4GQ-01 18 24039762 24039762 C T KCTD1 Missense_Mutation p.R146H 0.23 tolerated(0.54) benign(0.002) TCGA-HU-A4GQ-01 18 28671067 28671067 G T DSC2 Missense_Mutation p.A133D 0.24 deleterious(0) possibly_damaging(0.448) TCGA-HU-A4GQ-01 18 29122700 29122700 T C DSG2 Missense_Mutation p.M740T 0.21 tolerated(0.75) benign(0) TCGA-HU-A4GQ-01 18 29797785 29797785 C T MEP1B Nonsense_Mutation p.R650* 0.20 TCGA-HU-A4GQ-01 18 30792020 30792020 C A CCDC178 Splice_Site p.X693_splice 0.30 TCGA-HU-A4GQ-01 18 31325236 31325236 G T ASXL3 Missense_Mutation p.K1808N 0.25 probably_damaging(0.999) TCGA-HU-A4GQ-01 18 33694076 33694076 G A SLC39A6 Silent p.S609S 0.18 TCGA-HU-A4GQ-01 18 43459143 43459143 A - EPG5 Frame_Shift_Del p.Y1902Ifs*26 0.25 TCGA-HU-A4GQ-01 18 43667339 43667339 C G ATP5A1 Missense_Mutation p.A307P 0.20 deleterious_low_confidence(0) probably_damaging(0.964) TCGA-HU-A4GQ-01 18 44015310 44015310 G A RNF165 Missense_Mutation p.G146S 0.25 tolerated(0.57) benign(0.001) TCGA-HU-A4GQ-01 18 44560278 44560278 G A TCEB3B Missense_Mutation p.T453M 0.17 deleterious(0) probably_damaging(0.997) TCGA-HU-A4GQ-01 18 44627353 44627353 C T KATNAL2 Nonsense_Mutation p.Q460* 0.33 TCGA-HU-A4GQ-01 18 46783465 46783465 G T DYM Missense_Mutation p.L459I 0.18 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 18 51855760 51855760 C T STARD6 Missense_Mutation p.G146S 0.23 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 18 55238742 55238742 T C FECH Silent p.R121R 0.23 TCGA-HU-A4GQ-01 18 55274479 55274480 - A NARS Frame_Shift_Ins p.L296Ffs*39 0.12 TCGA-HU-A4GQ-01 18 5891793 5891793 C T TMEM200C Silent p.P90P 0.26 TCGA-HU-A4GQ-01 18 60232310 60232310 C T ZCCHC2 Silent p.A609A 0.22 TCGA-HU-A4GQ-01 18 65178220 65178220 T C DSEL Missense_Mutation p.K1219R 0.22 tolerated(0.55) probably_damaging(0.999) TCGA-HU-A4GQ-01 18 65180521 65180521 C - DSEL Frame_Shift_Del p.G452Dfs*7 0.27 TCGA-HU-A4GQ-01 18 67266666 67266666 A G DOK6 Missense_Mutation p.E74G 0.22 tolerated(0.11) benign(0.033) TCGA-HU-A4GQ-01 18 67992757 67992757 G A SOCS6 Missense_Mutation p.V285M 0.07 deleterious_low_confidence(0.03) benign(0.151) TCGA-HU-A4GQ-01 18 70526084 70526084 G T NETO1 Nonsense_Mutation p.S149* 0.25 TCGA-HU-A4GQ-01 18 70526300 70526301 - T NETO1 Frame_Shift_Ins p.R77Kfs*5 0.17 TCGA-HU-A4GQ-01 18 72344495 72344495 G A ZNF407 Missense_Mutation p.R507H 0.25 tolerated(0.5) benign(0) TCGA-HU-A4GQ-01 18 74083491 74083491 C T ZNF516 Missense_Mutation p.V1099I 0.19 tolerated(0.3) benign(0.02) TCGA-HU-A4GQ-01 18 77107848 77107848 G A ATP9B Missense_Mutation p.G921R 0.17 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GQ-01 18 77246402 77246402 G A NFATC1 Silent p.P736P 0.28 TCGA-HU-A4GQ-01 18 77246607 77246607 C - NFATC1 Frame_Shift_Del p.P806Rfs*8 0.14 TCGA-HU-A4GQ-01 18 8784282 8784282 C T SOGA2 Missense_Mutation p.A391V 0.24 tolerated(0.05) benign(0.031) TCGA-HU-A4GQ-01 19 10107118 10107118 C G COL5A3 Missense_Mutation p.Q471H 0.21 unknown(0) TCGA-HU-A4GQ-01 19 10226486 10226486 G A EIF3G Silent p.N238N 0.31 TCGA-HU-A4GQ-01 19 10398019 10398019 G A ICAM4 Missense_Mutation p.A111T 0.25 tolerated_low_confidence(0.17) probably_damaging(0.953) TCGA-HU-A4GQ-01 19 10402911 10402911 G A ICAM5 Missense_Mutation p.A292T 0.15 tolerated(0.18) benign(0.001) TCGA-HU-A4GQ-01 19 10578350 10578350 C - PDE4A 3'UTR 0.37 TCGA-HU-A4GQ-01 19 1058844 1058844 C A ABCA7 Missense_Mutation p.L1769M 0.21 deleterious(0.04) probably_damaging(0.931) TCGA-HU-A4GQ-01 19 10624889 10624889 G - S1PR5 Frame_Shift_Del p.L267Sfs*35 0.34 TCGA-HU-A4GQ-01 19 1083158 1083158 C T HMHA1 Nonsense_Mutation p.Q937* 0.17 TCGA-HU-A4GQ-01 19 10940880 10940880 G T DNM2 Missense_Mutation p.G790V 0.30 tolerated_low_confidence(0.05) probably_damaging(0.994) TCGA-HU-A4GQ-01 19 10941025 10941025 C - DNM2 Frame_Shift_Del p.P840Qfs*75 0.19 TCGA-HU-A4GQ-01 19 11216183 11216183 G A LDLR Missense_Mutation p.E201K 0.19 tolerated(0.06) probably_damaging(0.977) TCGA-HU-A4GQ-01 19 1223113 1223113 C T STK11 Silent p.D350D 0.30 TCGA-HU-A4GQ-01 19 1257093 1257093 G A MIDN Missense_Mutation p.R410Q 0.40 deleterious(0) benign(0.238) TCGA-HU-A4GQ-01 19 13246173 13246173 G A NACC1 Missense_Mutation p.S51N 0.19 deleterious(0.02) probably_damaging(0.985) TCGA-HU-A4GQ-01 19 13394195 13394195 G T CACNA1A Nonsense_Mutation p.C1236* 0.26 TCGA-HU-A4GQ-01 19 1390972 1390972 C T NDUFS7 Missense_Mutation p.R111C 0.30 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-HU-A4GQ-01 19 14000816 14000816 T A C19orf57 Missense_Mutation p.T285S 0.19 tolerated(0.17) possibly_damaging(0.801) TCGA-HU-A4GQ-01 19 1440481 1440481 G A RPS15 3'UTR 0.30 TCGA-HU-A4GQ-01 19 1465252 1465252 A C APC2 Missense_Mutation p.N651T 0.26 probably_damaging(1) TCGA-HU-A4GQ-01 19 1488257 1488257 G A PCSK4 Missense_Mutation p.T106M 0.27 deleterious(0.01) probably_damaging(0.932) TCGA-HU-A4GQ-01 19 1506232 1506232 G A ADAMTSL5 Missense_Mutation p.R400C 0.33 deleterious(0.01) probably_damaging(0.932) TCGA-HU-A4GQ-01 19 15124536 15124536 G T CCDC105 Missense_Mutation p.S208I 0.27 tolerated(0.12) benign(0.029) TCGA-HU-A4GQ-01 19 15281358 15281358 G A NOTCH3 Missense_Mutation p.P1633L 0.26 tolerated(0.14) benign(0.004) TCGA-HU-A4GQ-01 19 15365024 15365024 C T BRD4 Silent p.S699S 0.18 TCGA-HU-A4GQ-01 19 15466133 15466135 CTC - AKAP8 In_Frame_Del p.G557del 0.23 TCGA-HU-A4GQ-01 19 15483948 15483948 T C AKAP8 Missense_Mutation p.Q192R 0.32 tolerated(0.13) benign(0.411) TCGA-HU-A4GQ-01 19 15564287 15564287 G A RASAL3 Silent p.P767P 0.33 TCGA-HU-A4GQ-01 19 1592581 1592581 C A MBD3 Missense_Mutation p.R17M 0.35 deleterious(0.03) benign(0.004) TCGA-HU-A4GQ-01 19 1615698 1615698 G - TCF3 Frame_Shift_Del p.R525Gfs*76 0.23 TCGA-HU-A4GQ-01 19 16623836 16623836 G A C19orf44 Missense_Mutation p.A551T 0.26 deleterious(0) probably_damaging(0.986) TCGA-HU-A4GQ-01 19 16631266 16631266 G A CHERP Missense_Mutation p.R752C 0.23 tolerated(0.07) benign(0.006) TCGA-HU-A4GQ-01 19 17758169 17758169 G A UNC13A Missense_Mutation p.A650V 0.33 tolerated(0.31) benign(0.173) TCGA-HU-A4GQ-01 19 18119538 18119538 C T ARRDC2 Missense_Mutation p.T98M 0.29 tolerated(0.1) benign(0.393) TCGA-HU-A4GQ-01 19 1854753 1854753 C T KLF16 Missense_Mutation p.R155H 0.19 deleterious(0) probably_damaging(0.996) TCGA-HU-A4GQ-01 19 18778890 18778890 G A KLHL26 Missense_Mutation p.R228H 0.23 tolerated(0.79) benign(0.004) TCGA-HU-A4GQ-01 19 18956893 18956893 C A UPF1 Silent p.T112T 0.25 TCGA-HU-A4GQ-01 19 19105053 19105054 - T SUGP2 3'UTR 0.26 TCGA-HU-A4GQ-01 19 19106069 19106069 G A SUGP2 Silent p.F1004F 0.29 TCGA-HU-A4GQ-01 19 1912913 1912913 C T ADAT3 Silent p.D289D 0.24 TCGA-HU-A4GQ-01 19 19162461 19162461 A T ARMC6 Missense_Mutation p.S104C 0.19 tolerated(0.17) benign(0.006) TCGA-HU-A4GQ-01 19 19338121 19338121 C A NCAN Silent p.P564P 0.21 TCGA-HU-A4GQ-01 19 19338279 19338279 C - NCAN Frame_Shift_Del p.W619Gfs*14 0.25 TCGA-HU-A4GQ-01 19 19626126 19626126 G A TSSK6 Silent p.T37T 0.23 TCGA-HU-A4GQ-01 19 19741101 19741101 G A GMIP Missense_Mutation p.R862C 0.20 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 19 19822955 19822955 G A ZNF14 Nonsense_Mutation p.R379* 0.24 TCGA-HU-A4GQ-01 19 1990129 1990129 G A BTBD2 Missense_Mutation p.R288C 0.22 deleterious(0.02) probably_damaging(0.998) TCGA-HU-A4GQ-01 19 2078279 2078279 C - MOB3A Frame_Shift_Del p.G94Afs*29 0.20 TCGA-HU-A4GQ-01 19 2112967 2112967 C A AP3D1 Splice_Site p.X894_splice 0.29 TCGA-HU-A4GQ-01 19 2255290 2255290 C T JSRP1 Nonsense_Mutation p.W8* 0.33 TCGA-HU-A4GQ-01 19 2426118 2426118 C T TMPRSS9 3'UTR 0.30 TCGA-HU-A4GQ-01 19 2431600 2431600 C T LMNB2 Silent p.G589G 0.21 TCGA-HU-A4GQ-01 19 3005854 3005855 - G TLE2 Frame_Shift_Ins p.R538Pfs*59 0.25 TCGA-HU-A4GQ-01 19 3009627 3009627 G A TLE2 Silent p.N362N 0.30 TCGA-HU-A4GQ-01 19 3193377 3193377 G T NCLN Missense_Mutation p.K157N 0.25 tolerated(0.07) benign(0.001) TCGA-HU-A4GQ-01 19 32971337 32971337 G T DPY19L3 Missense_Mutation p.E621D 0.24 deleterious(0.03) benign(0.378) TCGA-HU-A4GQ-01 19 33697149 33697149 C T LRP3 Silent p.A491A 0.31 TCGA-HU-A4GQ-01 19 33698276 33698276 G A LRP3 Missense_Mutation p.C703Y 0.46 tolerated_low_confidence(1) benign(0.006) TCGA-HU-A4GQ-01 19 34868469 34868469 T G GPI Intron 0.29 TCGA-HU-A4GQ-01 19 3496774 3496774 C T DOHH Silent p.T13T 0.15 TCGA-HU-A4GQ-01 19 3544813 3544813 G A MFSD12 Nonsense_Mutation p.R472* 0.34 TCGA-HU-A4GQ-01 19 35800942 35800942 G A MAG Missense_Mutation p.S466N 0.23 tolerated(0.32) benign(0.001) TCGA-HU-A4GQ-01 19 36124806 36124806 C T RBM42 Missense_Mutation p.P301L 0.33 deleterious(0) unknown(0) TCGA-HU-A4GQ-01 19 3613518 3613518 C A CACTIN Silent p.V474V 0.25 TCGA-HU-A4GQ-01 19 36277879 36277879 T G ARHGAP33 Missense_Mutation p.L675R 0.18 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-HU-A4GQ-01 19 36278542 36278542 A G ARHGAP33 Silent p.S864S 0.31 TCGA-HU-A4GQ-01 19 36380854 36380854 G A NFKBID Silent p.L276L 0.30 TCGA-HU-A4GQ-01 19 36642444 36642446 TCC - COX7A1 In_Frame_Del p.E35del 0.27 TCGA-HU-A4GQ-01 19 37580028 37580028 G A ZNF420 Missense_Mutation p.R3Q 0.22 tolerated(1) benign(0) TCGA-HU-A4GQ-01 19 37676074 37676074 G C ZNF585B 3'UTR 0.24 TCGA-HU-A4GQ-01 19 38621145 38621145 C T SIPA1L3 Missense_Mutation p.T959I 0.29 deleterious(0) probably_damaging(0.99) TCGA-HU-A4GQ-01 19 38702689 38702689 C T DPF1 3'UTR 0.29 TCGA-HU-A4GQ-01 19 38853439 38853439 G T CATSPERG Missense_Mutation p.E814D 0.34 tolerated(0.16) benign(0.388) TCGA-HU-A4GQ-01 19 38876239 38876239 T C GGN Missense_Mutation p.T555A 0.15 tolerated_low_confidence(0.07) possibly_damaging(0.489) TCGA-HU-A4GQ-01 19 38886249 38886249 G A SPRED3 Missense_Mutation p.A233T 0.40 tolerated(0.63) benign(0.001) TCGA-HU-A4GQ-01 19 38899423 38899423 C G FAM98C Silent p.G317G 0.20 TCGA-HU-A4GQ-01 19 39005673 39005673 C T RYR1 Silent p.D3160D 0.27 TCGA-HU-A4GQ-01 19 39220045 39220045 G A ACTN4 Silent p.T903T 0.33 TCGA-HU-A4GQ-01 19 39230781 39230781 C A CAPN12 Missense_Mutation p.E213D 0.38 deleterious(0) benign(0.167) TCGA-HU-A4GQ-01 19 39967135 39967135 C T SUPT5H 3'UTR 0.39 TCGA-HU-A4GQ-01 19 39971205 39971205 G A TIMM50 Silent p.L7L 0.28 TCGA-HU-A4GQ-01 19 39997718 39997718 G A DLL3 Missense_Mutation p.R378H 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-HU-A4GQ-01 19 4037657 4037657 C T PIAS4 Silent p.N439N 0.30 TCGA-HU-A4GQ-01 19 4054897 4054897 G A ZBTB7A Missense_Mutation p.R112C 0.43 deleterious(0.05) probably_damaging(0.931) TCGA-HU-A4GQ-01 19 40762839 40762839 C T AKT2 Missense_Mutation p.V57I 0.23 tolerated(0.23) benign(0.213) TCGA-HU-A4GQ-01 19 41744408 41744408 C T AXL Missense_Mutation p.T343M 0.39 tolerated(0.31) benign(0.017) TCGA-HU-A4GQ-01 19 41810040 41810040 G A HNRNPUL1 Silent p.P712P 0.39 TCGA-HU-A4GQ-01 19 4207271 4207271 C A ANKRD24 Missense_Mutation p.L167I 0.17 deleterious(0.02) possibly_damaging(0.636) TCGA-HU-A4GQ-01 19 4234811 4234811 G A EBI3 Missense_Mutation p.R176H 0.22 tolerated(0.79) benign(0.021) TCGA-HU-A4GQ-01 19 42879930 42879930 G A MEGF8 Missense_Mutation p.R2447H 0.20 tolerated(0.09) possibly_damaging(0.885) TCGA-HU-A4GQ-01 19 42909669 42909669 C A LIPE Missense_Mutation p.G804C 0.23 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GQ-01 19 43258696 43258696 G A PSG8 Silent p.Y344Y 0.27 TCGA-HU-A4GQ-01 19 43349296 43349296 T G PSG10P RNA 0.31 TCGA-HU-A4GQ-01 19 43433781 43433781 T C PSG7 Silent p.P174P 0.28 TCGA-HU-A4GQ-01 19 4363850 4363850 C T SH3GL1 Missense_Mutation p.R164H 0.24 deleterious(0) probably_damaging(0.981) TCGA-HU-A4GQ-01 19 4433182 4433182 G A CHAF1A Silent p.P773P 0.23 TCGA-HU-A4GQ-01 19 44378024 44378024 T - ZNF404 Frame_Shift_Del p.K114Nfs*37 0.21 TCGA-HU-A4GQ-01 19 4499549 4499549 T G HDGFRP2 Missense_Mutation p.L546R 0.36 deleterious(0) unknown(0) TCGA-HU-A4GQ-01 19 45206716 45206716 G - CEACAM16 Frame_Shift_Del p.E47Nfs*24 0.26 TCGA-HU-A4GQ-01 19 4529279 4529279 C - PLIN5 Intron 0.19 TCGA-HU-A4GQ-01 19 45451758 45451759 CT - APOC2 Frame_Shift_Del p.L9Vfs*10 0.20 TCGA-HU-A4GQ-01 19 45515294 45515294 G A RELB Silent p.A88A 0.40 TCGA-HU-A4GQ-01 19 45575278 45575278 C T ZNF296 Missense_Mutation p.G337R 0.28 deleterious(0.02) possibly_damaging(0.698) TCGA-HU-A4GQ-01 19 45731456 45731456 G A EXOC3L2 Silent p.D53D 0.28 TCGA-HU-A4GQ-01 19 46137614 46137614 G A EML2 Nonsense_Mutation p.R300* 0.27 TCGA-HU-A4GQ-01 19 46205070 46205070 C T QPCTL Missense_Mutation p.R301C 0.27 deleterious(0.01) probably_damaging(0.961) TCGA-HU-A4GQ-01 19 46215486 46215486 G A FBXO46 Missense_Mutation p.P423L 0.29 tolerated(0.18) benign(0.199) TCGA-HU-A4GQ-01 19 46283706 46283706 G A DMPK 5'UTR 0.36 TCGA-HU-A4GQ-01 19 46375522 46375522 A G FOXA3 Missense_Mutation p.S87G 0.19 tolerated(0.57) unknown(0) TCGA-HU-A4GQ-01 19 46387909 46387909 G A IRF2BP1 Missense_Mutation p.A375V 0.26 tolerated(0.15) benign(0.003) TCGA-HU-A4GQ-01 19 47177930 47177930 C T PRKD2 Silent p.T829T 0.22 TCGA-HU-A4GQ-01 19 47422911 47422911 C T ARHGAP35 Missense_Mutation p.R327C 0.14 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GQ-01 19 47823236 47823236 C T C5AR1 Missense_Mutation p.R68W 0.23 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GQ-01 19 47823428 47823428 G A C5AR1 Missense_Mutation p.A132T 0.10 deleterious(0.01) probably_damaging(0.97) TCGA-HU-A4GQ-01 19 47823993 47823993 G A C5AR1 Missense_Mutation p.R320Q 0.23 tolerated(0.05) possibly_damaging(0.488) TCGA-HU-A4GQ-01 19 4817841 4817841 G A TICAM1 Silent p.D183D 0.30 TCGA-HU-A4GQ-01 19 48917652 48917652 C T GRIN2D Missense_Mutation p.T408M 0.14 tolerated(0.07) benign(0.445) TCGA-HU-A4GQ-01 19 4902846 4902846 G - ARRDC5 Frame_Shift_Del p.Q12Nfs*7 0.15 TCGA-HU-A4GQ-01 19 49793858 49793858 T G SLC6A16 Intron 0.21 TCGA-HU-A4GQ-01 19 49813643 49813643 G - SLC6A16 Frame_Shift_Del p.W181Gfs*31 0.19 TCGA-HU-A4GQ-01 19 50059063 50059063 G A NOSIP Missense_Mutation p.A284V 0.38 deleterious(0) probably_damaging(0.93) TCGA-HU-A4GQ-01 19 50154472 50154474 GAA - SCAF1 In_Frame_Del p.E282del 0.15 TCGA-HU-A4GQ-01 19 50204806 50204806 C T CPT1C Missense_Mutation p.A203V 0.19 tolerated(0.23) benign(0.006) TCGA-HU-A4GQ-01 19 50208533 50208533 G A CPT1C Silent p.T314T 0.21 TCGA-HU-A4GQ-01 19 50365310 50365310 G A PNKP Silent p.H393H 0.17 TCGA-HU-A4GQ-01 19 50461749 50461749 G A SIGLEC11 Missense_Mutation p.P481L 0.12 deleterious(0) probably_damaging(0.988) TCGA-HU-A4GQ-01 19 51328969 51328969 G A KLK15 3'Flank 0.30 TCGA-HU-A4GQ-01 19 51359531 51359531 G T KLK3 Missense_Mutation p.G28C 0.21 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 19 51512561 51512561 G A KLK9 Silent p.A26A 0.29 TCGA-HU-A4GQ-01 19 51535220 51535220 G A KLK12 Silent p.S123S 0.27 TCGA-HU-A4GQ-01 19 51729600 51729600 G A CD33 Missense_Mutation p.G245R 0.19 deleterious(0.03) benign(0.26) TCGA-HU-A4GQ-01 19 52033157 52033157 C A SIGLEC6 Missense_Mutation p.G278V 0.28 deleterious(0) benign(0.082) TCGA-HU-A4GQ-01 19 52131128 52131128 G A SIGLEC5 Missense_Mutation p.P319L 0.26 tolerated(0.33) benign(0.231) TCGA-HU-A4GQ-01 19 5221061 5221061 G A PTPRS Silent p.D1135D 0.23 TCGA-HU-A4GQ-01 19 5222792 5222792 G A PTPRS Missense_Mutation p.T1004M 0.26 deleterious(0) probably_damaging(0.94) TCGA-HU-A4GQ-01 19 52723484 52723484 G A PPP2R1A Missense_Mutation p.A449T 0.25 tolerated(0.41) benign(0.001) TCGA-HU-A4GQ-01 19 53343090 53343090 A G ZNF468 3'UTR 0.27 TCGA-HU-A4GQ-01 19 53747065 53747065 C A ZNF677 Missense_Mutation p.R34M 0.24 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GQ-01 19 53855783 53855783 C T ZNF845 Missense_Mutation p.R619C 0.31 tolerated(0.05) possibly_damaging(0.72) TCGA-HU-A4GQ-01 19 541398 541398 C T CDC34 Missense_Mutation p.T186M 0.25 deleterious(0) probably_damaging(0.996) TCGA-HU-A4GQ-01 19 54201665 54201665 A C MIR523 RNA 0.22 TCGA-HU-A4GQ-01 19 54660654 54660654 G - LENG1 Frame_Shift_Del p.P141Rfs*127 0.28 TCGA-HU-A4GQ-01 19 54746593 54746593 G A LILRA6 Missense_Mutation p.P3L 0.41 tolerated(0.12) benign(0) TCGA-HU-A4GQ-01 19 54965617 54965617 C - LENG8 Frame_Shift_Del p.G147Afs*33 0.21 TCGA-HU-A4GQ-01 19 54967959 54967959 G A LENG8 Silent p.V530V 0.28 TCGA-HU-A4GQ-01 19 55568152 55568152 C T RDH13 Missense_Mutation p.R70Q 0.30 deleterious(0) probably_damaging(0.98) TCGA-HU-A4GQ-01 19 55597479 55597479 G T EPS8L1 Missense_Mutation p.Q523H 0.23 deleterious(0) probably_damaging(0.941) TCGA-HU-A4GQ-01 19 56180456 56180456 C T U2AF2 Missense_Mutation p.A318V 0.36 tolerated(0.07) benign(0.06) TCGA-HU-A4GQ-01 19 5667115 5667115 G - SAFB Frame_Shift_Del p.G800Afs*8 0.24 TCGA-HU-A4GQ-01 19 56691982 56691982 G A GALP Missense_Mutation p.A39T 0.15 deleterious(0.04) benign(0.424) TCGA-HU-A4GQ-01 19 5693407 5693408 - GG LONP1 Frame_Shift_Ins p.M869Pfs*12 0.24 TCGA-HU-A4GQ-01 19 57286562 57286562 G A ZIM2 Nonsense_Mutation p.Q360* 0.23 TCGA-HU-A4GQ-01 19 57326969 57326969 A G PEG3 Silent p.N947N 0.21 TCGA-HU-A4GQ-01 19 57765667 57765667 C T ZNF805 Missense_Mutation p.R494C 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-HU-A4GQ-01 19 57839442 57839442 C T ZNF543 Silent p.C204C 0.16 TCGA-HU-A4GQ-01 19 5785755 5785755 C T DUS3L Missense_Mutation p.R537Q 0.25 deleterious(0.02) probably_damaging(0.978) TCGA-HU-A4GQ-01 19 57985774 57985774 A G ZNF772 Missense_Mutation p.M113T 0.27 tolerated(0.79) benign(0.002) TCGA-HU-A4GQ-01 19 58038930 58038930 G A ZNF549 5'UTR 0.32 TCGA-HU-A4GQ-01 19 58102493 58102493 C T ZIK1 Silent p.G438G 0.36 TCGA-HU-A4GQ-01 19 5844280 5844280 C T FUT3 Missense_Mutation p.E191K 0.22 tolerated(1) benign(0.002) TCGA-HU-A4GQ-01 19 58453723 58453724 - C ZNF256 Frame_Shift_Ins p.R152Qfs*11 0.20 TCGA-HU-A4GQ-01 19 58549499 58549499 C T ZSCAN1 Nonsense_Mutation p.Q99* 0.29 TCGA-HU-A4GQ-01 19 58601411 58601411 C T ZSCAN18 Missense_Mutation p.R131H 0.20 tolerated(0.14) possibly_damaging(0.616) TCGA-HU-A4GQ-01 19 58868090 58868090 G A ZNF497 Silent p.C304C 0.31 TCGA-HU-A4GQ-01 19 6670112 6670112 C T TNFSF14 5'UTR 0.32 TCGA-HU-A4GQ-01 19 6702207 6702207 T C C3 Missense_Mutation p.M791V 0.40 tolerated(0.97) benign(0.017) TCGA-HU-A4GQ-01 19 7521218 7521218 C A ARHGEF18 Missense_Mutation p.L516M 0.24 deleterious(0.03) probably_damaging(0.999) TCGA-HU-A4GQ-01 19 7535174 7535176 TCT - ARHGEF18 In_Frame_Del p.F1173del 0.23 TCGA-HU-A4GQ-01 19 7987519 7987519 C - SNAPC2 Frame_Shift_Del p.P294Qfs*11 0.27 TCGA-HU-A4GQ-01 19 8171032 8171032 T C FBN3 Silent p.P1591P 0.21 TCGA-HU-A4GQ-01 19 8468313 8468313 G A RAB11B Silent p.V176V 0.27 TCGA-HU-A4GQ-01 19 8595204 8595204 A T MYO1F Missense_Mutation p.I735N 0.26 deleterious(0) probably_damaging(0.976) TCGA-HU-A4GQ-01 19 8668765 8668765 C T ADAMTS10 Missense_Mutation p.G147S 0.31 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 19 886015 886015 G A MED16 Missense_Mutation p.R212C 0.23 deleterious(0) possibly_damaging(0.898) TCGA-HU-A4GQ-01 1 100606543 100606543 A G TRMT13 Missense_Mutation p.I213V 0.23 tolerated(0.08) benign(0.062) TCGA-HU-A4GQ-01 1 10163014 10163014 C A UBE4B Silent p.S148S 0.31 TCGA-HU-A4GQ-01 1 103444434 103444434 A G COL11A1 Silent p.T897T 0.22 TCGA-HU-A4GQ-01 1 103471836 103471836 C T COL11A1 Silent p.T573T 0.24 TCGA-HU-A4GQ-01 1 10363628 10363628 C T KIF1B Intron 0.23 TCGA-HU-A4GQ-01 1 10699617 10699617 G A CASZ1 Silent p.S1554S 0.28 TCGA-HU-A4GQ-01 1 10708013 10708013 G - CASZ1 Frame_Shift_Del p.T1115Pfs*35 0.24 TCGA-HU-A4GQ-01 1 107691418 107691418 C T NTNG1 Missense_Mutation p.P68L 0.25 deleterious(0.01) probably_damaging(1) TCGA-HU-A4GQ-01 1 108690905 108690905 A G SLC25A24 Missense_Mutation p.M309T 0.33 deleterious(0) possibly_damaging(0.868) TCGA-HU-A4GQ-01 1 109191326 109191326 C T HENMT1 Silent p.A348A 0.18 TCGA-HU-A4GQ-01 1 109560159 109560159 C T WDR47 Missense_Mutation p.E75K 0.18 tolerated(0.23) benign(0.011) TCGA-HU-A4GQ-01 1 110256088 110256088 G A GSTM5 Intron 0.25 TCGA-HU-A4GQ-01 1 110719306 110719306 G - SLC6A17 Frame_Shift_Del p.L272Cfs*91 0.20 TCGA-HU-A4GQ-01 1 11082567 11082567 C T TARDBP Silent p.F367F 0.24 TCGA-HU-A4GQ-01 1 112524251 112524251 G T KCND3 Silent p.T366T 0.25 TCGA-HU-A4GQ-01 1 11291032 11291032 C T MTOR Missense_Mutation p.R910Q 0.20 tolerated(0.57) benign(0.297) TCGA-HU-A4GQ-01 1 113238801 113238801 A G MOV10 Missense_Mutation p.E604G 0.25 tolerated(0.38) benign(0.003) TCGA-HU-A4GQ-01 1 116243928 116243928 A T CASQ2 Missense_Mutation p.D378E 0.31 tolerated(0.6) unknown(0) TCGA-HU-A4GQ-01 1 117635478 117635480 CTT - TTF2 In_Frame_Del p.F979del 0.14 TCGA-HU-A4GQ-01 1 11983333 11983333 C T KIAA2013 Missense_Mutation p.R416Q 0.24 tolerated(0.3) benign(0.001) TCGA-HU-A4GQ-01 1 1262961 1262961 C T GLTPD1 Missense_Mutation p.R155C 0.26 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 1 1290110 1290110 G - MXRA8 Frame_Shift_Del p.R301Gfs*107 0.30 TCGA-HU-A4GQ-01 1 12921076 12921076 G A PRAMEF2 Silent p.R289R 0.12 TCGA-HU-A4GQ-01 1 13109041 13109041 C G PRAMEF23 RNA 0.32 TCGA-HU-A4GQ-01 1 13668962 13668962 G - PRAMEF14 Frame_Shift_Del p.C457Afs*39 0.26 TCGA-HU-A4GQ-01 1 1424619 1424619 C T ATAD3B Silent p.N434N 0.21 TCGA-HU-A4GQ-01 1 145075752 145075752 C T PDE4DIP Silent p.T37T 0.05 TCGA-HU-A4GQ-01 1 145473629 145473629 G A ANKRD34A Missense_Mutation p.G101S 0.26 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GQ-01 1 145764896 145764896 T C GPR89A 3'UTR 0.40 TCGA-HU-A4GQ-01 1 146639440 146639440 G A PRKAB2 Missense_Mutation p.R77W 0.21 tolerated(0.17) probably_damaging(0.998) TCGA-HU-A4GQ-01 1 147119279 147119279 T - ACP6 Frame_Shift_Del p.K411Nfs*11 0.20 TCGA-HU-A4GQ-01 1 147380280 147380280 C T GJA8 Silent p.Y66Y 0.26 TCGA-HU-A4GQ-01 1 1480327 1480327 G A SSU72 Missense_Mutation p.R94W 0.25 tolerated(0.19) benign(0.01) TCGA-HU-A4GQ-01 1 150444621 150444621 G A RPRD2 Missense_Mutation p.R1066H 0.33 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-HU-A4GQ-01 1 150923182 150923182 G A SETDB1 Missense_Mutation p.R610Q 0.21 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GQ-01 1 151131319 151131319 A G TNFAIP8L2 Missense_Mutation p.Y49C 0.24 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GQ-01 1 151137837 151137837 T C LYSMD1 5'UTR 0.25 TCGA-HU-A4GQ-01 1 151262662 151262662 G A ZNF687 Missense_Mutation p.R1010H 0.31 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 1 151263646 151263646 G A ZNF687 Silent p.A1225A 0.32 TCGA-HU-A4GQ-01 1 151372478 151372478 C A PSMB4 Silent p.T54T 0.24 TCGA-HU-A4GQ-01 1 151509788 151509788 T G CGN Missense_Mutation p.L1193R 0.30 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 1 151682225 151682225 G A CELF3 Nonsense_Mutation p.R91* 0.40 TCGA-HU-A4GQ-01 1 152084711 152084711 G A TCHH Missense_Mutation p.R328C 0.24 unknown(0) TCGA-HU-A4GQ-01 1 152329055 152329055 G A FLG2 Missense_Mutation p.R403C 0.26 unknown(0) TCGA-HU-A4GQ-01 1 152944454 152944454 C - SPRR4 Frame_Shift_Del p.P31Lfs*79 0.19 TCGA-HU-A4GQ-01 1 152957687 152957688 - A SPRR1A Intron 0.22 TCGA-HU-A4GQ-01 1 153598863 153598863 C T S100A13 Missense_Mutation p.R29Q 0.23 tolerated(0.51) benign(0.044) TCGA-HU-A4GQ-01 1 153914704 153914704 C T DENND4B Missense_Mutation p.V257I 0.23 tolerated(0.06) benign(0.168) TCGA-HU-A4GQ-01 1 154223782 154223782 C A UBAP2L Silent p.S493S 0.29 TCGA-HU-A4GQ-01 1 154557515 154557515 G A ADAR Missense_Mutation p.R1150W 0.29 deleterious(0) probably_damaging(0.967) TCGA-HU-A4GQ-01 1 154942742 154942742 T G SHC1 Silent p.A87A 0.23 TCGA-HU-A4GQ-01 1 155108817 155108817 C T SLC50A1 Silent p.N41N 0.33 TCGA-HU-A4GQ-01 1 155182303 155182303 T C MTX1 Missense_Mutation p.L300P 0.29 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GQ-01 1 155240683 155240683 C T CLK2 Missense_Mutation p.R29Q 0.24 deleterious(0) unknown(0) TCGA-HU-A4GQ-01 1 155924705 155924705 G A ARHGEF2 Missense_Mutation p.R591W 0.20 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GQ-01 1 156510583 156510583 G A IQGAP3 Nonsense_Mutation p.R886* 0.20 TCGA-HU-A4GQ-01 1 156617400 156617400 G A BCAN Silent p.P189P 0.22 TCGA-HU-A4GQ-01 1 156701791 156701792 CA - RRNAD1 Frame_Shift_Del p.T41Rfs*96 0.22 TCGA-HU-A4GQ-01 1 156702120 156702120 C T RRNAD1 Missense_Mutation p.A95V 0.30 deleterious(0) possibly_damaging(0.459) TCGA-HU-A4GQ-01 1 156821779 156821779 G A INSRR Missense_Mutation p.A281V 0.41 tolerated(0.3) benign(0.323) TCGA-HU-A4GQ-01 1 156823914 156823914 G A INSRR Silent p.Y89Y 0.28 TCGA-HU-A4GQ-01 1 156843506 156843506 C T NTRK1 Missense_Mutation p.P311L 0.25 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 1 156918229 156918229 G A ARHGEF11 Missense_Mutation p.R663W 0.24 deleterious(0.02) probably_damaging(0.964) TCGA-HU-A4GQ-01 1 157067714 157067714 G - ETV3L Frame_Shift_Del p.R185Efs*128 0.25 TCGA-HU-A4GQ-01 1 157103857 157103858 - T ETV3 Intron 0.16 TCGA-HU-A4GQ-01 1 158622409 158622409 T C SPTA1 Missense_Mutation p.R1075G 0.30 tolerated(0.06) possibly_damaging(0.735) TCGA-HU-A4GQ-01 1 1586823 1586823 C A CDK11B Missense_Mutation p.R76I 0.16 probably_damaging(0.955) TCGA-HU-A4GQ-01 1 158815592 158815592 G T MNDA Missense_Mutation p.R262S 0.15 deleterious(0.02) benign(0.129) TCGA-HU-A4GQ-01 1 159779226 159779226 C T FCRL6 Silent p.H213H 0.24 TCGA-HU-A4GQ-01 1 159799767 159799767 G A SLAMF8 Missense_Mutation p.R51Q 0.25 deleterious(0.01) possibly_damaging(0.885) TCGA-HU-A4GQ-01 1 160064775 160064775 G A IGSF8 Missense_Mutation p.A109V 0.33 tolerated(0.07) benign(0.441) TCGA-HU-A4GQ-01 1 160325683 160325683 C T NCSTN Missense_Mutation p.R496C 0.18 deleterious(0) probably_damaging(0.946) TCGA-HU-A4GQ-01 1 160535331 160535331 C T CD84 Missense_Mutation p.R84Q 0.24 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 1 16053856 16053856 C A PLEKHM2 Missense_Mutation p.A430D 0.24 tolerated_low_confidence(0.56) benign(0.036) TCGA-HU-A4GQ-01 1 16065731 16065731 G - SLC25A34 Frame_Shift_Del p.G250Afs*7 0.25 TCGA-HU-A4GQ-01 1 161010422 161010422 C T USF1 Missense_Mutation p.V220M 0.11 tolerated(0.05) probably_damaging(0.995) TCGA-HU-A4GQ-01 1 161479826 161479826 C T FCGR2A Missense_Mutation p.T194M 0.28 tolerated(0.42) benign(0.062) TCGA-HU-A4GQ-01 1 161697466 161697466 G A FCRLB 3'UTR 0.19 TCGA-HU-A4GQ-01 1 162745616 162745616 C T DDR2 Silent p.S677S 0.27 TCGA-HU-A4GQ-01 1 16455930 16455930 C T EPHA2 Missense_Mutation p.D942N 0.28 deleterious(0.04) benign(0.429) TCGA-HU-A4GQ-01 1 165179968 165179968 C T LMX1A Missense_Mutation p.V239I 0.25 deleterious(0) possibly_damaging(0.903) TCGA-HU-A4GQ-01 1 166815887 166815887 C T POGK Silent p.S57S 0.17 TCGA-HU-A4GQ-01 1 167654710 167654711 - C RCSD1 Frame_Shift_Ins p.K57Qfs*9 0.28 TCGA-HU-A4GQ-01 1 167830192 167830192 G A ADCY10 Nonsense_Mutation p.R576* 0.23 TCGA-HU-A4GQ-01 1 16809975 16809975 G A CROCCP3 RNA 0.12 TCGA-HU-A4GQ-01 1 1685037 1685037 G A NADK Missense_Mutation p.R530W 0.37 deleterious(0) probably_damaging(0.995) TCGA-HU-A4GQ-01 1 175092540 175092540 T C TNN Silent p.I885I 0.24 TCGA-HU-A4GQ-01 1 175375480 175375480 G A TNR Missense_Mutation p.A124V 0.16 deleterious(0.03) possibly_damaging(0.624) TCGA-HU-A4GQ-01 1 17565179 17565179 T G PADI1 Silent p.G509G 0.18 TCGA-HU-A4GQ-01 1 176999987 176999987 G T ASTN1 Missense_Mutation p.H323N 0.06 deleterious_low_confidence(0.03) probably_damaging(0.99) TCGA-HU-A4GQ-01 1 177199214 177199214 G A BRINP2 Missense_Mutation p.A68T 0.32 tolerated(0.07) possibly_damaging(0.65) TCGA-HU-A4GQ-01 1 177250252 177250252 G A BRINP2 Missense_Mutation p.R647Q 0.19 deleterious(0.01) probably_damaging(0.992) TCGA-HU-A4GQ-01 1 177901700 177901700 C A SEC16B Silent p.G979G 0.40 TCGA-HU-A4GQ-01 1 177909758 177909758 C T SEC16B Missense_Mutation p.R705Q 0.40 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 1 178861408 178861408 C T RALGPS2 Nonsense_Mutation p.R431* 0.40 TCGA-HU-A4GQ-01 1 17975138 17975138 C A ARHGEF10L Missense_Mutation p.P788T 0.19 deleterious(0.01) benign(0.028) TCGA-HU-A4GQ-01 1 179991857 179991857 G A CEP350 Missense_Mutation p.G1087E 0.11 possibly_damaging(0.764) TCGA-HU-A4GQ-01 1 181058046 181058046 T A IER5 Missense_Mutation p.F3Y 0.15 tolerated(0.16) benign(0.321) TCGA-HU-A4GQ-01 1 182615870 182615870 C T RGS8 Silent p.%3D 0.17 TCGA-HU-A4GQ-01 1 182922238 182922238 C T SHCBP1L Missense_Mutation p.A11T 0.26 tolerated_low_confidence(0.16) benign(0.026) TCGA-HU-A4GQ-01 1 186055508 186055508 C T HMCN1 Silent p.I3005I 0.37 TCGA-HU-A4GQ-01 1 186159100 186159100 C T HMCN1 3'UTR 0.33 TCGA-HU-A4GQ-01 1 18809182 18809182 G A KLHDC7A Nonsense_Mutation p.W569* 0.32 TCGA-HU-A4GQ-01 1 19180947 19180947 G A TAS1R2 Silent p.R339R 0.18 TCGA-HU-A4GQ-01 1 193066740 193066740 G T GLRX2 Missense_Mutation p.L113I 0.21 deleterious(0) probably_damaging(0.996) TCGA-HU-A4GQ-01 1 19488089 19488089 G A UBR4 Silent p.S1723S 0.25 TCGA-HU-A4GQ-01 1 197099130 197099130 A G ASPM Silent p.A848A 0.19 TCGA-HU-A4GQ-01 1 198700747 198700747 T C PTPRC Silent p.D622D 0.28 TCGA-HU-A4GQ-01 1 200594042 200594043 TT - KIF14 5'Flank 0.35 TCGA-HU-A4GQ-01 1 200969527 200969527 C T KIF21B Missense_Mutation p.R559Q 0.43 tolerated(0.16) benign(0.002) TCGA-HU-A4GQ-01 1 201022613 201022613 G A CACNA1S Silent p.L1257L 0.11 TCGA-HU-A4GQ-01 1 201196200 201196200 G A IGFN1 Silent p.A3659A 0.12 TCGA-HU-A4GQ-01 1 201618271 201618272 - C NAV1 Frame_Shift_Ins p.L161Pfs*30 0.28 TCGA-HU-A4GQ-01 1 203008345 203008345 G A PPFIA4 Missense_Mutation p.R70H 0.19 deleterious(0) probably_damaging(0.996) TCGA-HU-A4GQ-01 1 204588727 204588727 G A LRRN2 Silent p.L132L 0.16 TCGA-HU-A4GQ-01 1 205039135 205039135 C T CNTN2 Missense_Mutation p.R793C 0.49 deleterious(0.04) benign(0.032) TCGA-HU-A4GQ-01 1 206224496 206224496 C - AVPR1B Frame_Shift_Del p.N21Mfs*37 0.33 TCGA-HU-A4GQ-01 1 206224692 206224692 G A AVPR1B Silent p.A84A 0.19 TCGA-HU-A4GQ-01 1 206757885 206757885 C T RASSF5 Missense_Mutation p.A286V 0.38 tolerated(0.11) probably_damaging(0.992) TCGA-HU-A4GQ-01 1 208225682 208225682 C T PLXNA2 Missense_Mutation p.E995K 0.09 tolerated(0.7) benign(0.066) TCGA-HU-A4GQ-01 1 209806438 209806438 G A LAMB3 Missense_Mutation p.A202V 0.54 tolerated(0.34) benign(0.073) TCGA-HU-A4GQ-01 1 209849053 209849053 C - G0S2 Frame_Shift_Del p.L10Wfs*5 0.42 TCGA-HU-A4GQ-01 1 21031055 21031055 C T KIF17 Silent p.R336R 0.25 TCGA-HU-A4GQ-01 1 210415016 210415016 G A SERTAD4 Silent p.L135L 0.06 TCGA-HU-A4GQ-01 1 210857061 210857061 G A KCNH1 Silent p.C844C 0.19 TCGA-HU-A4GQ-01 1 211451507 211451507 A - RCOR3 Frame_Shift_Del p.T191Lfs*7 0.28 TCGA-HU-A4GQ-01 1 214488155 214488156 - G SMYD2 Frame_Shift_Ins p.E98Gfs*38 0.30 TCGA-HU-A4GQ-01 1 215793922 215793922 A - KCTD3 Frame_Shift_Del p.S806Vfs*16 0.17 TCGA-HU-A4GQ-01 1 21582577 21582577 C T ECE1 Missense_Mutation p.G295R 0.30 tolerated(0.17) benign(0.007) TCGA-HU-A4GQ-01 1 21585263 21585263 C T ECE1 Missense_Mutation p.A229T 0.38 tolerated(0.37) benign(0.031) TCGA-HU-A4GQ-01 1 217793263 217793264 - T GPATCH2 Frame_Shift_Ins p.R212Kfs*15 0.12 TCGA-HU-A4GQ-01 1 218520021 218520021 T - TGFB2 5'UTR 0.24 TCGA-HU-A4GQ-01 1 220338127 220338127 A - RAB3GAP2 Frame_Shift_Del p.F1034Lfs*5 0.28 TCGA-HU-A4GQ-01 1 22055010 22055010 A - USP48 Intron 0.30 TCGA-HU-A4GQ-01 1 22166330 22166330 G A HSPG2 Missense_Mutation p.R3232C 0.22 possibly_damaging(0.849) TCGA-HU-A4GQ-01 1 22178284 22178284 G T HSPG2 Missense_Mutation p.P2336T 0.10 benign(0.115) TCGA-HU-A4GQ-01 1 222713622 222713622 G A HHIPL2 Missense_Mutation p.R394W 0.18 tolerated(0.2) benign(0.027) TCGA-HU-A4GQ-01 1 223175814 223175814 G A DISP1 Missense_Mutation p.A359T 0.28 deleterious(0) probably_damaging(0.954) TCGA-HU-A4GQ-01 1 223177193 223177193 C T DISP1 Silent p.I818I 0.35 TCGA-HU-A4GQ-01 1 223178573 223178573 A G DISP1 Silent p.K1278K 0.13 TCGA-HU-A4GQ-01 1 2234746 2234746 G A SKI Missense_Mutation p.R373H 0.29 deleterious(0.01) probably_damaging(0.98) TCGA-HU-A4GQ-01 1 226034752 226034752 G - TMEM63A Frame_Shift_Del p.Q805Rfs*25 0.34 TCGA-HU-A4GQ-01 1 226566913 226566913 G T PARP1 Missense_Mutation p.L559M 0.21 tolerated(0.13) benign(0.326) TCGA-HU-A4GQ-01 1 227921819 227921819 C T SNAP47 5'Flank 0.35 TCGA-HU-A4GQ-01 1 228345688 228345688 G A GJC2 Missense_Mutation p.V77M 0.17 deleterious(0) probably_damaging(0.99) TCGA-HU-A4GQ-01 1 228346347 228346347 C T GJC2 Silent p.D296D 0.48 TCGA-HU-A4GQ-01 1 228403459 228403459 C T OBSCN Missense_Mutation p.A675V 0.60 possibly_damaging(0.46) TCGA-HU-A4GQ-01 1 228481310 228481310 C T OBSCN Silent p.T4137T 0.21 TCGA-HU-A4GQ-01 1 228494787 228494787 C T OBSCN Missense_Mutation p.R4995C 0.13 benign(0.008) TCGA-HU-A4GQ-01 1 228509323 228509323 G A OBSCN Silent p.V5884V 0.14 TCGA-HU-A4GQ-01 1 228527676 228527676 G A OBSCN Silent p.T6720T 0.40 TCGA-HU-A4GQ-01 1 228558393 228558393 C T OBSCN Missense_Mutation p.A7684V 0.18 probably_damaging(0.987) TCGA-HU-A4GQ-01 1 228564758 228564758 G A OBSCN Missense_Mutation p.R8639H 0.50 probably_damaging(0.989) TCGA-HU-A4GQ-01 1 22915804 22915804 A G EPHA8 Intron 0.24 TCGA-HU-A4GQ-01 1 229737923 229737923 A - TAF5L Intron 0.29 TCGA-HU-A4GQ-01 1 231471747 231471747 G A EXOC8 Missense_Mutation p.T582M 0.23 deleterious(0) probably_damaging(0.964) TCGA-HU-A4GQ-01 1 232577521 232577521 C A SIPA1L2 Missense_Mutation p.R1177S 0.45 tolerated(0.05) benign(0.002) TCGA-HU-A4GQ-01 1 233397867 233397867 C T PCNXL2 Missense_Mutation p.R135Q 0.37 tolerated(0.31) benign(0.003) TCGA-HU-A4GQ-01 1 23418797 23418797 C T LUZP1 Missense_Mutation p.G653D 0.24 deleterious_low_confidence(0.04) benign(0.014) TCGA-HU-A4GQ-01 1 23519758 23519758 C T HTR1D Missense_Mutation p.V319M 0.25 deleterious(0) probably_damaging(0.924) TCGA-HU-A4GQ-01 1 235323946 235323947 - T RBM34 Frame_Shift_Ins p.T82Nfs*5 0.28 TCGA-HU-A4GQ-01 1 235331782 235331782 A - ARID4B 3'UTR 0.51 TCGA-HU-A4GQ-01 1 236180456 236180456 G A NID1 Missense_Mutation p.T749M 0.18 deleterious(0.01) possibly_damaging(0.577) TCGA-HU-A4GQ-01 1 236192939 236192939 G A NID1 Missense_Mutation p.T550M 0.12 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 1 236749163 236749163 G C HEATR1 Missense_Mutation p.A669G 0.15 tolerated(0.3) benign(0.005) TCGA-HU-A4GQ-01 1 236761267 236761267 G A HEATR1 Missense_Mutation p.P172S 0.20 tolerated(0.06) possibly_damaging(0.883) TCGA-HU-A4GQ-01 1 237580390 237580390 G A RYR2 Missense_Mutation p.R272H 0.31 probably_damaging(0.999) TCGA-HU-A4GQ-01 1 240071340 240071340 T C CHRM3 Missense_Mutation p.F197L 0.21 tolerated(0.3) benign(0.022) TCGA-HU-A4GQ-01 1 240370881 240370881 G T FMN2 Silent p.P923P 0.23 TCGA-HU-A4GQ-01 1 240371493 240371493 G A FMN2 Silent p.A1127A 0.37 TCGA-HU-A4GQ-01 1 24077927 24077929 GAG - TCEB3 In_Frame_Del p.E305del 0.14 TCGA-HU-A4GQ-01 1 24080896 24080896 C T TCEB3 Silent p.P605P 0.32 TCGA-HU-A4GQ-01 1 240939439 240939439 C T RGS7 3'UTR 0.46 TCGA-HU-A4GQ-01 1 24417383 24417383 G A MYOM3 Missense_Mutation p.R446W 0.27 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 1 245025801 245025803 TCT - HNRNPU In_Frame_Del p.E279del 0.13 TCGA-HU-A4GQ-01 1 245245466 245245466 T A EFCAB2 Splice_Site p.X88_splice 0.17 TCGA-HU-A4GQ-01 1 245849907 245849908 - C KIF26B Frame_Shift_Ins p.S1209Qfs*58 0.22 TCGA-HU-A4GQ-01 1 246707850 246707850 C T TFB2M Missense_Mutation p.R331H 0.24 deleterious(0.02) probably_damaging(0.999) TCGA-HU-A4GQ-01 1 247607387 247607387 G A NLRP3 Missense_Mutation p.G928E 0.36 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 1 248084484 248084484 G A OR2T8 Silent p.T55T 0.15 TCGA-HU-A4GQ-01 1 248129580 248129580 T C OR2AK2 Missense_Mutation p.V316A 0.17 deleterious(0) benign(0.004) TCGA-HU-A4GQ-01 1 248366979 248366979 A G OR2M3 Missense_Mutation p.I204V 0.39 tolerated(1) benign(0.009) TCGA-HU-A4GQ-01 1 248437015 248437015 C G OR2T33 Missense_Mutation p.L34F 0.39 tolerated(0.5) benign(0.001) TCGA-HU-A4GQ-01 1 249144569 249144569 C T ZNF692 Missense_Mutation p.R472H 0.23 tolerated(0.1) possibly_damaging(0.487) TCGA-HU-A4GQ-01 1 28304892 28304892 G A EYA3 Missense_Mutation p.A545V 0.22 deleterious(0) possibly_damaging(0.501) TCGA-HU-A4GQ-01 1 28800273 28800273 C - PHACTR4 Frame_Shift_Del p.P356Hfs*33 0.25 TCGA-HU-A4GQ-01 1 28856393 28856393 C T RCC1 Silent p.R5R 0.21 TCGA-HU-A4GQ-01 1 32084721 32084721 G T HCRTR1 5'UTR 0.27 TCGA-HU-A4GQ-01 1 32222255 32222255 G A BAI2 Silent p.I61I 0.19 TCGA-HU-A4GQ-01 1 33747277 33747277 C A ZNF362 Missense_Mutation p.P258Q 0.21 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 1 33777753 33777753 C - A3GALT2 Frame_Shift_Del p.A79Lfs*27 0.28 TCGA-HU-A4GQ-01 1 35855667 35855667 G T ZMYM4 Missense_Mutation p.S852I 0.21 tolerated(0.23) benign(0.002) TCGA-HU-A4GQ-01 1 36026083 36026083 C T NCDN Silent p.L111L 0.23 TCGA-HU-A4GQ-01 1 36107026 36107026 T C PSMB2 Missense_Mutation p.Y3C 0.19 tolerated(1) benign(0.013) TCGA-HU-A4GQ-01 1 36520649 36520649 C T AGO3 Missense_Mutation p.R793C 0.25 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GQ-01 1 37945912 37945914 CTC - ZC3H12A In_Frame_Del p.S156del 0.31 TCGA-HU-A4GQ-01 1 39929341 39929341 G A MACF1 Missense_Mutation p.G5187R 0.19 possibly_damaging(0.671) TCGA-HU-A4GQ-01 1 40557001 40557001 C T PPT1 Missense_Mutation p.G145S 0.29 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GQ-01 1 40769739 40769739 T G COL9A2 Missense_Mutation p.K440N 0.33 tolerated(0.19) benign(0.003) TCGA-HU-A4GQ-01 1 42041238 42041238 C T HIVEP3 Silent p.A1728A 0.28 TCGA-HU-A4GQ-01 1 42048809 42048809 G - HIVEP3 Frame_Shift_Del p.H554Tfs*20 0.28 TCGA-HU-A4GQ-01 1 43824946 43824946 C - CDC20 Frame_Shift_Del p.N22Mfs*74 0.26 TCGA-HU-A4GQ-01 1 43913908 43913908 C T SZT2 Missense_Mutation p.A3184V 0.27 tolerated(0.15) benign(0.018) TCGA-HU-A4GQ-01 1 44063426 44063426 C T PTPRF Silent p.S607S 0.41 TCGA-HU-A4GQ-01 1 44157236 44157236 T C KDM4A Missense_Mutation p.L771P 0.23 deleterious(0) probably_damaging(0.979) TCGA-HU-A4GQ-01 1 44424484 44424484 C T IPO13 Silent p.L651L 0.16 TCGA-HU-A4GQ-01 1 44457978 44457978 C T CCDC24 Missense_Mutation p.P74L 0.26 deleterious(0) possibly_damaging(0.564) TCGA-HU-A4GQ-01 1 45243749 45243749 T C RPS8 Silent p.N155N 0.32 TCGA-HU-A4GQ-01 1 46743801 46743801 T C RAD54L Silent p.S697S 0.32 TCGA-HU-A4GQ-01 1 46751402 46751402 C T LRRC41 Missense_Mutation p.R376Q 0.24 tolerated(0.63) benign(0.417) TCGA-HU-A4GQ-01 1 46879321 46879321 G A FAAH 3'UTR 0.29 TCGA-HU-A4GQ-01 1 50884409 50884409 C T DMRTA2 Silent p.A519A 0.50 TCGA-HU-A4GQ-01 1 52305912 52305912 T - NRD1 Frame_Shift_Del p.T206Lfs*17 0.17 TCGA-HU-A4GQ-01 1 52891130 52891130 C T ZCCHC11 Silent p.P1587P 0.23 TCGA-HU-A4GQ-01 1 53972276 53972276 G A GLIS1 3'UTR 0.26 TCGA-HU-A4GQ-01 1 53990523 53990523 C T GLIS1 Missense_Mutation p.R332H 0.26 deleterious(0) possibly_damaging(0.485) TCGA-HU-A4GQ-01 1 55223397 55223397 C T PARS2 3'UTR 0.29 TCGA-HU-A4GQ-01 1 55319710 55319710 G A DHCR24 Silent p.H406H 0.38 TCGA-HU-A4GQ-01 1 55512313 55512313 C - PCSK9 Frame_Shift_Del p.D175Tfs*11 0.24 TCGA-HU-A4GQ-01 1 55562769 55562769 T C USP24 Missense_Mutation p.E1931G 0.32 tolerated(0.05) benign(0.077) TCGA-HU-A4GQ-01 1 57202768 57202768 T - C1orf168 Frame_Shift_Del p.E596Sfs*8 0.25 TCGA-HU-A4GQ-01 1 6204126 6204126 A G CHD5 Missense_Mutation p.I631T 0.27 deleterious(0) probably_damaging(0.969) TCGA-HU-A4GQ-01 1 6520225 6520225 C T ESPN 3'UTR 0.18 TCGA-HU-A4GQ-01 1 6525249 6525249 C T TNFRSF25 Missense_Mutation p.C65Y 0.20 deleterious(0.02) probably_damaging(0.916) TCGA-HU-A4GQ-01 1 66829177 66829177 G A PDE4B Missense_Mutation p.V403M 0.26 deleterious(0.02) possibly_damaging(0.582) TCGA-HU-A4GQ-01 1 67724741 67724741 C A IL23R Missense_Mutation p.S607Y 0.37 deleterious(0.01) probably_damaging(0.919) TCGA-HU-A4GQ-01 1 70505412 70505412 G T LRRC7 Missense_Mutation p.G1264V 0.25 deleterious(0.01) benign(0.282) TCGA-HU-A4GQ-01 1 70671255 70671255 C T LRRC40 5'UTR 0.29 TCGA-HU-A4GQ-01 1 74507481 74507481 A - LRRIQ3 Frame_Shift_Del p.P379Lfs*26 0.25 TCGA-HU-A4GQ-01 1 77759520 77759520 G A AK5 Missense_Mutation p.R97Q 0.29 tolerated(0.14) probably_damaging(0.961) TCGA-HU-A4GQ-01 1 78163101 78163101 A G USP33 Silent p.G910G 0.30 TCGA-HU-A4GQ-01 1 78430612 78430612 C T FUBP1 Silent p.P226P 0.26 TCGA-HU-A4GQ-01 1 78479136 78479136 A - DNAJB4 Frame_Shift_Del p.W208Gfs*43 0.21 TCGA-HU-A4GQ-01 1 8424212 8424212 G A RERE Silent p.P548P 0.24 TCGA-HU-A4GQ-01 1 85550270 85550270 T C WDR63 Silent p.H144H 0.30 TCGA-HU-A4GQ-01 1 86048117 86048117 G A CYR61 Missense_Mutation p.R218H 0.20 tolerated(0.17) benign(0.001) TCGA-HU-A4GQ-01 1 86965770 86965771 TT - CLCA1 3'UTR 0.33 TCGA-HU-A4GQ-01 1 8927232 8927232 G - ENO1 Frame_Shift_Del p.L130Cfs*40 0.25 TCGA-HU-A4GQ-01 1 89613322 89613322 C - GBP7 Frame_Shift_Del p.H432Tfs*5 0.30 TCGA-HU-A4GQ-01 1 898826 898826 G A KLHL17 Missense_Mutation p.A433T 0.24 tolerated(0.08) benign(0.028) TCGA-HU-A4GQ-01 1 94998030 94998030 C T F3 Missense_Mutation p.A200T 0.18 tolerated(0.06) benign(0.154) TCGA-HU-A4GQ-01 1 99418625 99418625 C T LPPR5 Splice_Site p.X207_splice 0.23 TCGA-HU-A4GQ-01 20 11898962 11898964 CTT - BTBD3 In_Frame_Del p.F15del 0.21 TCGA-HU-A4GQ-01 20 1285981 1285981 C T SNPH Silent p.D256D 0.30 TCGA-HU-A4GQ-01 20 13514787 13514787 T C TASP1 Missense_Mutation p.E226G 0.25 tolerated(0.12) benign(0.02) TCGA-HU-A4GQ-01 20 1426391 1426391 G A NSFL1C Silent p.D292D 0.23 TCGA-HU-A4GQ-01 20 15480470 15480470 G T MACROD2 Missense_Mutation p.W208L 0.16 deleterious(0.01) probably_damaging(0.945) TCGA-HU-A4GQ-01 20 15948229 15948229 C T MACROD2 Silent p.G313G 0.14 TCGA-HU-A4GQ-01 20 16360306 16360306 G A KIF16B Missense_Mutation p.R781C 0.12 tolerated(0.07) benign(0.013) TCGA-HU-A4GQ-01 20 16729075 16729075 C T OTOR Missense_Mutation p.P10L 0.19 tolerated(0.72) benign(0) TCGA-HU-A4GQ-01 20 18139825 18139825 G T CSRP2BP Nonsense_Mutation p.G200* 0.16 TCGA-HU-A4GQ-01 20 18477798 18477798 C T RBBP9 Missense_Mutation p.S5N 0.24 tolerated(0.52) benign(0) TCGA-HU-A4GQ-01 20 18507120 18507120 G A SEC23B Missense_Mutation p.R313H 0.19 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 20 1918278 1918278 G A SIRPA 3'UTR 0.23 TCGA-HU-A4GQ-01 20 2097724 2097724 G A STK35 Silent p.A435A 0.17 TCGA-HU-A4GQ-01 20 21492970 21492970 G A NKX2-2 Missense_Mutation p.A138V 0.29 deleterious(0.03) probably_damaging(0.996) TCGA-HU-A4GQ-01 20 21687285 21687285 G - PAX1 Frame_Shift_Del p.S168Afs*47 0.20 TCGA-HU-A4GQ-01 20 21687609 21687610 - T PAX1 Frame_Shift_Ins p.P274Lfs*77 0.18 TCGA-HU-A4GQ-01 20 2582779 2582779 A C TMC2 Missense_Mutation p.Q415H 0.21 deleterious(0.01) probably_damaging(0.971) TCGA-HU-A4GQ-01 20 30749115 30749115 G A TM9SF4 Missense_Mutation p.G576R 0.23 deleterious(0) probably_damaging(0.996) TCGA-HU-A4GQ-01 20 30915466 30915466 T C KIF3B Splice_Site p.X656_splice 0.34 TCGA-HU-A4GQ-01 20 30956896 30956896 G A ASXL1 Silent p.L74L 0.23 TCGA-HU-A4GQ-01 20 31041275 31041275 G A C20orf112 Silent p.D199D 0.42 TCGA-HU-A4GQ-01 20 31975140 31975140 C T CDK5RAP1 Silent p.T248T 0.16 TCGA-HU-A4GQ-01 20 32026768 32026768 C T SNTA1 Silent p.Q125Q 0.23 TCGA-HU-A4GQ-01 20 32378977 32378977 A G ZNF341 Missense_Mutation p.D733G 0.13 tolerated(0.12) possibly_damaging(0.648) TCGA-HU-A4GQ-01 20 32880243 32880243 G A AHCY Silent p.D122D 0.42 TCGA-HU-A4GQ-01 20 32883218 32883218 C T AHCY Missense_Mutation p.V68I 0.24 tolerated_low_confidence(0.51) benign(0.002) TCGA-HU-A4GQ-01 20 32996530 32996530 T C ITCH Silent p.D48D 0.20 TCGA-HU-A4GQ-01 20 33514064 33514064 C T ACSS2 Missense_Mutation p.T641I 0.13 tolerated(0.28) benign(0.001) TCGA-HU-A4GQ-01 20 33568503 33568503 G A MYH7B Silent p.A197A 0.19 TCGA-HU-A4GQ-01 20 33588235 33588235 C T MYH7B Missense_Mutation p.R1683C 0.19 probably_damaging(0.972) TCGA-HU-A4GQ-01 20 33592318 33592318 C T TRPC4AP Silent p.T664T 0.20 TCGA-HU-A4GQ-01 20 33862189 33862191 AGG - MMP24 In_Frame_Del p.E573del 0.48 TCGA-HU-A4GQ-01 20 34092291 34092291 C T CEP250 Nonsense_Mutation p.R2032* 0.31 TCGA-HU-A4GQ-01 20 34214296 34214296 C T CPNE1 Missense_Mutation p.R499Q 0.21 tolerated(0.58) benign(0.006) TCGA-HU-A4GQ-01 20 34218859 34218859 A G CPNE1 Missense_Mutation p.L325P 0.23 deleterious(0) probably_damaging(0.982) TCGA-HU-A4GQ-01 20 35422750 35422750 A G SOGA1 Silent p.P1245P 0.19 TCGA-HU-A4GQ-01 20 3684491 3684491 G - SIGLEC1 Frame_Shift_Del p.I319Sfs*12 0.15 TCGA-HU-A4GQ-01 20 37529261 37529261 A G PPP1R16B Missense_Mutation p.M169V 0.41 deleterious(0) probably_damaging(0.983) TCGA-HU-A4GQ-01 20 37580194 37580194 G A FAM83D Silent p.T293T 0.20 TCGA-HU-A4GQ-01 20 39317196 39317196 C T MAFB Missense_Mutation p.A99T 0.25 tolerated(0.14) benign(0.015) TCGA-HU-A4GQ-01 20 39792073 39792073 G A PLCG1 Missense_Mutation p.R282Q 0.18 tolerated(0.68) benign(0.105) TCGA-HU-A4GQ-01 20 39991679 39991679 C A EMILIN3 Missense_Mutation p.G177V 0.20 deleterious(0.01) benign(0.124) TCGA-HU-A4GQ-01 20 4164300 4164300 C T SMOX Missense_Mutation p.A510V 0.28 tolerated(0.23) benign(0.004) TCGA-HU-A4GQ-01 20 42088683 42088683 G A SRSF6 Missense_Mutation p.R131Q 0.13 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GQ-01 20 4229076 4229076 C T ADRA1D Missense_Mutation p.V177M 0.24 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GQ-01 20 42788552 42788552 A G JPH2 Missense_Mutation p.M292T 0.23 deleterious(0.02) probably_damaging(0.978) TCGA-HU-A4GQ-01 20 43243243 43243243 C T PKIG Missense_Mutation p.R16W 0.18 deleterious(0.02) probably_damaging(0.954) TCGA-HU-A4GQ-01 20 43545432 43545432 C T PABPC1L Silent p.G141G 0.18 TCGA-HU-A4GQ-01 20 44469465 44469465 G A SNX21 Missense_Mutation p.R212H 0.22 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GQ-01 20 44470568 44470568 C T ACOT8 Missense_Mutation p.R290Q 0.28 tolerated(0.07) benign(0.248) TCGA-HU-A4GQ-01 20 44472981 44472981 T C ACOT8 Silent p.P189P 0.17 TCGA-HU-A4GQ-01 20 45002176 45002176 T C ELMO2 Splice_Site p.X427_splice 0.14 TCGA-HU-A4GQ-01 20 45228639 45228639 C T SLC13A3 Silent p.T193T 0.20 TCGA-HU-A4GQ-01 20 45353746 45353746 A G SLC2A10 Missense_Mutation p.Y24C 0.16 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 20 45354606 45354606 G A SLC2A10 Missense_Mutation p.V311I 0.12 tolerated(0.08) possibly_damaging(0.593) TCGA-HU-A4GQ-01 20 45874806 45874806 G A ZMYND8 Missense_Mutation p.R744W 0.17 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-HU-A4GQ-01 20 46301066 46301066 G A SULF2 Silent p.G484G 0.14 TCGA-HU-A4GQ-01 20 47582548 47582548 A G ARFGEF2 Silent p.S349S 0.08 TCGA-HU-A4GQ-01 20 4854641 4854641 C T SLC23A2 Missense_Mutation p.R348H 0.33 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GQ-01 20 49575847 49575847 G A MOCS3 Silent p.P156P 0.19 TCGA-HU-A4GQ-01 20 50090678 50090678 G A NFATC2 Missense_Mutation p.A516V 0.24 tolerated(0.06) probably_damaging(0.951) TCGA-HU-A4GQ-01 20 50290784 50290784 C T ATP9A Silent p.S315S 0.09 TCGA-HU-A4GQ-01 20 50407935 50407935 G A SALL4 Missense_Mutation p.P363S 0.23 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GQ-01 20 50715063 50715063 G A ZFP64 Missense_Mutation p.P79L 0.20 deleterious(0.04) benign(0.056) TCGA-HU-A4GQ-01 20 51872628 51872628 G T TSHZ2 Silent p.L877L 0.15 TCGA-HU-A4GQ-01 20 52198490 52198490 C T ZNF217 Silent p.P292P 0.18 TCGA-HU-A4GQ-01 20 54573541 54573541 A - CBLN4 3'UTR 0.26 TCGA-HU-A4GQ-01 20 55033646 55033646 G A CASS4 Missense_Mutation p.R735H 0.23 tolerated(0.56) benign(0.009) TCGA-HU-A4GQ-01 20 55982697 55982697 A G RBM38 Missense_Mutation p.Y172C 0.26 deleterious(0) probably_damaging(0.995) TCGA-HU-A4GQ-01 20 57042225 57042225 G A APCDD1L Silent p.T226T 0.23 TCGA-HU-A4GQ-01 20 57268923 57268925 TCA - NPEPL1 In_Frame_Del p.I95del 0.21 TCGA-HU-A4GQ-01 20 57766653 57766653 G A ZNF831 Silent p.T193T 0.22 TCGA-HU-A4GQ-01 20 58349514 58349514 C T PHACTR3 Silent p.D381D 0.22 TCGA-HU-A4GQ-01 20 58457202 58457202 T - SYCP2 Frame_Shift_Del p.S850Afs*5 0.19 TCGA-HU-A4GQ-01 20 58486832 58486832 G T SYCP2 Silent p.L315L 0.13 TCGA-HU-A4GQ-01 20 6022019 6022019 C T LRRN4 Silent p.S624S 0.23 TCGA-HU-A4GQ-01 20 60469990 60469990 G A CDH4 Missense_Mutation p.V359I 0.19 tolerated(0.85) benign(0.003) TCGA-HU-A4GQ-01 20 60885620 60885620 G A LAMA5 Silent p.V3485V 0.15 TCGA-HU-A4GQ-01 20 60887968 60887968 C T LAMA5 Silent p.P3018P 0.28 TCGA-HU-A4GQ-01 20 60889877 60889877 T C LAMA5 Missense_Mutation p.Q2725R 0.15 benign(0.059) TCGA-HU-A4GQ-01 20 60966136 60966136 C T CABLES2 Missense_Mutation p.R443H 0.17 deleterious(0) probably_damaging(0.983) TCGA-HU-A4GQ-01 20 61542717 61542717 C T DIDO1 Missense_Mutation p.R83H 0.15 probably_damaging(0.999) TCGA-HU-A4GQ-01 20 61542746 61542746 G A DIDO1 Silent p.R73R 0.22 TCGA-HU-A4GQ-01 20 61937336 61937336 G A COL20A1 Silent p.E147E 0.23 TCGA-HU-A4GQ-01 20 61978175 61978175 C T CHRNA4 Missense_Mutation p.R600H 0.44 deleterious(0) probably_damaging(0.964) TCGA-HU-A4GQ-01 20 62197056 62197056 G A HELZ2 Missense_Mutation p.A1040V 0.16 tolerated(0.39) benign(0.006) TCGA-HU-A4GQ-01 20 62223446 62223446 A G GMEB2 Missense_Mutation p.V294A 0.26 deleterious(0) possibly_damaging(0.709) TCGA-HU-A4GQ-01 20 62373333 62373333 C T SLC2A4RG Missense_Mutation p.P168L 0.17 deleterious(0.03) probably_damaging(1) TCGA-HU-A4GQ-01 20 62378374 62378374 G A ZBTB46 Missense_Mutation p.A560V 0.17 tolerated(0.57) benign(0.015) TCGA-HU-A4GQ-01 20 62421431 62421431 C T ZBTB46 Missense_Mutation p.R227H 0.14 tolerated(0.3) benign(0.004) TCGA-HU-A4GQ-01 20 62572555 62572555 C T UCKL1 Silent p.A310A 0.14 TCGA-HU-A4GQ-01 20 62737267 62737267 G A NPBWR2 Silent p.Y306Y 0.43 TCGA-HU-A4GQ-01 20 62859258 62859258 G A MYT1 Missense_Mutation p.R870H 0.20 probably_damaging(0.993) TCGA-HU-A4GQ-01 20 62859360 62859360 C T MYT1 Intron 0.23 TCGA-HU-A4GQ-01 20 7864200 7864200 C T HAO1 3'UTR 0.21 TCGA-HU-A4GQ-01 20 8720006 8720006 A T PLCB1 Silent p.P769P 0.25 TCGA-HU-A4GQ-01 20 9546634 9546634 A G PAK7 Missense_Mutation p.V463A 0.22 deleterious(0) probably_damaging(0.993) TCGA-HU-A4GQ-01 21 11039371 11039371 C A BAGE2 RNA 0.03 TCGA-HU-A4GQ-01 21 28327176 28327176 A G ADAMTS5 Silent p.H373H 0.23 TCGA-HU-A4GQ-01 21 30330717 30330717 T A LTN1 Missense_Mutation p.D959V 0.22 deleterious(0) probably_damaging(0.964) TCGA-HU-A4GQ-01 21 30339377 30339378 - T LTN1 Frame_Shift_Ins p.T525Nfs*26 0.24 TCGA-HU-A4GQ-01 21 30408598 30408598 C T USP16 Silent p.Y117Y 0.24 TCGA-HU-A4GQ-01 21 33073336 33073336 G - SCAF4 Frame_Shift_Del p.P250Hfs*96 0.15 TCGA-HU-A4GQ-01 21 33076147 33076147 A - SCAF4 Frame_Shift_Del p.F84Lfs*9 0.22 TCGA-HU-A4GQ-01 21 34962202 34962202 G A CRYZL1 Silent p.L326L 0.14 TCGA-HU-A4GQ-01 21 37605203 37605203 C T DOPEY2 Silent p.L818L 0.31 TCGA-HU-A4GQ-01 21 37605312 37605312 C T DOPEY2 Missense_Mutation p.T854M 0.26 deleterious(0.03) probably_damaging(0.996) TCGA-HU-A4GQ-01 21 38390443 38390443 G - RIPPLY3 Frame_Shift_Del p.E172Rfs*50 0.25 TCGA-HU-A4GQ-01 21 40558989 40558989 A - BRWD1 Frame_Shift_Del p.L2309* 0.15 TCGA-HU-A4GQ-01 21 40636903 40636903 A - BRWD1 Frame_Shift_Del p.S525Hfs*17 0.21 TCGA-HU-A4GQ-01 21 42647425 42647425 C T BACE2 Silent p.S477S 0.24 TCGA-HU-A4GQ-01 21 42861455 42861455 C T TMPRSS2 Missense_Mutation p.A139T 0.21 deleterious(0.05) benign(0.178) TCGA-HU-A4GQ-01 21 43259870 43259870 G A PRDM15 Missense_Mutation p.R611W 0.31 deleterious_low_confidence(0) possibly_damaging(0.821) TCGA-HU-A4GQ-01 21 44488638 44488638 G A CBS Silent p.F99F 0.23 TCGA-HU-A4GQ-01 21 45547815 45547815 C T PWP2 Missense_Mutation p.R715C 0.32 deleterious(0) possibly_damaging(0.762) TCGA-HU-A4GQ-01 21 45713741 45713741 G A AIRE Missense_Mutation p.A450T 0.19 tolerated(0.31) possibly_damaging(0.527) TCGA-HU-A4GQ-01 21 45815350 45815350 C A TRPM2 Silent p.T616T 0.26 TCGA-HU-A4GQ-01 21 45876939 45876939 G A LRRC3 Missense_Mutation p.A138T 0.28 deleterious(0) probably_damaging(0.992) TCGA-HU-A4GQ-01 21 45949798 45949798 C T TSPEAR Missense_Mutation p.A225T 0.22 deleterious(0) possibly_damaging(0.9) TCGA-HU-A4GQ-01 21 45978317 45978317 G - KRTAP10-3 Frame_Shift_Del p.C95Afs*151 0.25 TCGA-HU-A4GQ-01 21 46311734 46311734 C T ITGB2 Missense_Mutation p.G468S 0.06 deleterious(0) probably_damaging(0.997) TCGA-HU-A4GQ-01 21 47574137 47574137 G A FTCD Missense_Mutation p.P55L 0.25 deleterious(0) probably_damaging(0.985) TCGA-HU-A4GQ-01 21 47611037 47611037 G A LSS Missense_Mutation p.A727V 0.23 tolerated(0.31) benign(0.001) TCGA-HU-A4GQ-01 21 47697552 47697552 C T MCM3AP Missense_Mutation p.E583K 0.34 deleterious(0.05) possibly_damaging(0.762) TCGA-HU-A4GQ-01 21 47731429 47731429 A G C21orf58 Missense_Mutation p.I221T 0.36 deleterious(0.05) benign(0.275) TCGA-HU-A4GQ-01 21 47817218 47817218 C T PCNT Missense_Mutation p.S1419L 0.26 possibly_damaging(0.602) TCGA-HU-A4GQ-01 21 47831466 47831466 G A PCNT Missense_Mutation p.A1827T 0.16 benign(0.004) TCGA-HU-A4GQ-01 22 16266973 16266973 A G POTEH Silent p.P492P 0.12 TCGA-HU-A4GQ-01 22 17280908 17280908 C A XKR3 Missense_Mutation p.L114F 0.18 tolerated(0.5) probably_damaging(0.961) TCGA-HU-A4GQ-01 22 17528308 17528308 C T CECR7 RNA 0.22 TCGA-HU-A4GQ-01 22 18022564 18022564 G A CECR2 Missense_Mutation p.R890H 0.29 tolerated_low_confidence(1) benign(0.001) TCGA-HU-A4GQ-01 22 18371904 18371904 A G MICAL3 Missense_Mutation p.M596T 0.19 probably_damaging(0.998) TCGA-HU-A4GQ-01 22 19137315 19137315 C T GSC2 Missense_Mutation p.R125H 0.35 deleterious(0) probably_damaging(0.99) TCGA-HU-A4GQ-01 22 19396041 19396041 A T HIRA Missense_Mutation p.I59N 0.22 deleterious(0) benign(0.377) TCGA-HU-A4GQ-01 22 19511314 19511314 C T CLDN5 Silent p.S240S 0.20 TCGA-HU-A4GQ-01 22 19511395 19511395 G A CLDN5 Silent p.C213C 0.10 TCGA-HU-A4GQ-01 22 19706193 19706193 G A SEPT5 Intron 0.33 TCGA-HU-A4GQ-01 22 19961234 19961234 T G ARVCF Missense_Mutation p.K724T 0.28 deleterious(0) probably_damaging(0.936) TCGA-HU-A4GQ-01 22 20079466 20079466 C T DGCR8 Missense_Mutation p.R527C 0.25 deleterious(0) probably_damaging(0.989) TCGA-HU-A4GQ-01 22 20127357 20127357 G A ZDHHC8 Missense_Mutation p.G167S 0.25 tolerated(0.09) probably_damaging(1) TCGA-HU-A4GQ-01 22 20130522 20130522 C - ZDHHC8 Frame_Shift_Del p.T459Rfs*177 0.31 TCGA-HU-A4GQ-01 22 20131072 20131072 G A ZDHHC8 Missense_Mutation p.R640Q 0.28 deleterious(0) possibly_damaging(0.809) TCGA-HU-A4GQ-01 22 20302311 20302311 G A DGCR6L Nonsense_Mutation p.R184* 0.07 TCGA-HU-A4GQ-01 22 20760633 20760633 C T ZNF74 Missense_Mutation p.T437M 0.27 deleterious(0) possibly_damaging(0.677) TCGA-HU-A4GQ-01 22 20812182 20812182 G A KLHL22 Silent p.G406G 0.11 TCGA-HU-A4GQ-01 22 21348009 21348009 G A LZTR1 Missense_Mutation p.R440H 0.36 deleterious(0.04) possibly_damaging(0.767) TCGA-HU-A4GQ-01 22 21349285 21349285 C T LZTR1 Missense_Mutation p.R638C 0.23 deleterious(0) possibly_damaging(0.856) TCGA-HU-A4GQ-01 22 22285542 22285542 T G PPM1F Missense_Mutation p.E290A 0.28 deleterious(0.01) probably_damaging(0.93) TCGA-HU-A4GQ-01 22 23494678 23494678 C T RAB36 Silent p.G130G 0.17 TCGA-HU-A4GQ-01 22 23495284 23495284 C T RAB36 Missense_Mutation p.R164C 0.23 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 22 24176339 24176339 G A SMARCB1 Missense_Mutation p.R377H 0.16 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GQ-01 22 24177042 24177042 G A DERL3 Missense_Mutation p.T231M 0.28 tolerated(0.11) benign(0.001) TCGA-HU-A4GQ-01 22 24487549 24487549 C T CABIN1 Missense_Mutation p.R1180C 0.21 deleterious(0) probably_damaging(0.957) TCGA-HU-A4GQ-01 22 24720240 24720240 A G SPECC1L Missense_Mutation p.D664G 0.19 deleterious(0.01) benign(0.064) TCGA-HU-A4GQ-01 22 25320332 25320332 C T SGSM1 3'UTR 0.33 TCGA-HU-A4GQ-01 22 26849090 26849090 A - HPS4 3'UTR 0.29 TCGA-HU-A4GQ-01 22 28194245 28194245 C T MN1 Missense_Mutation p.V763M 0.30 possibly_damaging(0.784) TCGA-HU-A4GQ-01 22 28195048 28195048 G A MN1 Missense_Mutation p.P495L 0.27 probably_damaging(0.939) TCGA-HU-A4GQ-01 22 29533564 29533564 G A KREMEN1 Missense_Mutation p.R289H 0.37 tolerated(0.14) benign(0.013) TCGA-HU-A4GQ-01 22 30116482 30116482 G A CABP7 Silent p.S23S 0.19 TCGA-HU-A4GQ-01 22 30405050 30405050 C T MTMR3 Silent p.N351N 0.27 TCGA-HU-A4GQ-01 22 31521988 31521988 C T INPP5J Intron 0.41 TCGA-HU-A4GQ-01 22 31737261 31737261 G A PATZ1 Intron 0.32 TCGA-HU-A4GQ-01 22 31859098 31859098 G A EIF4ENIF1 Missense_Mutation p.R203C 0.16 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GQ-01 22 32021760 32021760 G A PISD Silent p.R14R 0.27 TCGA-HU-A4GQ-01 22 32275660 32275660 C T DEPDC5 Missense_Mutation p.R1310W 0.26 deleterious(0.04) probably_damaging(0.998) TCGA-HU-A4GQ-01 22 32894316 32894316 T C FBXO7 Silent p.Y456Y 0.23 TCGA-HU-A4GQ-01 22 33712123 33712123 G A LARGE Missense_Mutation p.P467S 0.20 tolerated(0.08) possibly_damaging(0.543) TCGA-HU-A4GQ-01 22 35730403 35730403 G A TOM1 Silent p.A370A 0.33 TCGA-HU-A4GQ-01 22 35782832 35782832 G A HMOX1 Missense_Mutation p.R100H 0.21 tolerated(0.27) benign(0.002) TCGA-HU-A4GQ-01 22 36587367 36587367 A G APOL4 Missense_Mutation p.V270A 0.22 tolerated(0.76) benign(0.004) TCGA-HU-A4GQ-01 22 36714268 36714268 G A MYH9 Missense_Mutation p.A404V 0.27 possibly_damaging(0.608) TCGA-HU-A4GQ-01 22 37209766 37209766 T G PVALB Missense_Mutation p.R76S 0.29 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 22 37622790 37622790 C T RAC2 Missense_Mutation p.V168M 0.22 deleterious_low_confidence(0.01) benign(0.223) TCGA-HU-A4GQ-01 22 37769277 37769277 C T ELFN2 Silent p.T766T 0.23 TCGA-HU-A4GQ-01 22 38379399 38379399 G A SOX10 Silent p.N131N 0.12 TCGA-HU-A4GQ-01 22 39441441 39441441 T C APOBEC3F Missense_Mutation p.Y154H 0.31 tolerated(1) benign(0.027) TCGA-HU-A4GQ-01 22 39712957 39712957 G A RPL3 Intron 0.33 TCGA-HU-A4GQ-01 22 40080308 40080308 A G CACNA1I Silent p.A1944A 0.28 TCGA-HU-A4GQ-01 22 40417817 40417817 G A FAM83F Missense_Mutation p.A435T 0.31 tolerated_low_confidence(0.07) benign(0.027) TCGA-HU-A4GQ-01 22 40802568 40802568 G A SGSM3 Missense_Mutation p.D363N 0.15 tolerated(0.12) benign(0.003) TCGA-HU-A4GQ-01 22 40803530 40803530 C T SGSM3 Silent p.H494H 0.17 TCGA-HU-A4GQ-01 22 40815316 40815316 G A MKL1 Missense_Mutation p.R376C 0.27 deleterious(0) possibly_damaging(0.664) TCGA-HU-A4GQ-01 22 42296986 42296986 A G SREBF2 Intron 0.17 TCGA-HU-A4GQ-01 22 42606614 42606614 T C TCF20 Missense_Mutation p.I1566M 0.24 benign(0.001) TCGA-HU-A4GQ-01 22 43610139 43610139 G A SCUBE1 Silent p.D670D 0.08 TCGA-HU-A4GQ-01 22 44386201 44386201 G A SAMM50 Missense_Mutation p.G427R 0.25 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 22 44392215 44392215 T A SAMM50 Intron 0.27 TCGA-HU-A4GQ-01 22 45130968 45130968 A G PRR5 Missense_Mutation p.K229R 0.58 tolerated(0.19) possibly_damaging(0.877) TCGA-HU-A4GQ-01 22 45726516 45726516 C T FAM118A Silent p.Y185Y 0.26 TCGA-HU-A4GQ-01 22 45959153 45959153 G A FBLN1 Intron 0.24 TCGA-HU-A4GQ-01 22 46319046 46319046 C T WNT7B Missense_Mutation p.R247Q 0.26 tolerated(0.13) possibly_damaging(0.783) TCGA-HU-A4GQ-01 22 46786376 46786376 C T CELSR1 Silent p.A2086A 0.17 TCGA-HU-A4GQ-01 22 50471777 50471777 G A TTLL8 Silent p.I395I 0.22 TCGA-HU-A4GQ-01 22 50682250 50682250 C T TUBGCP6 Silent p.S213S 0.40 TCGA-HU-A4GQ-01 22 50718980 50718980 C T PLXNB2 Silent p.T1371T 0.23 TCGA-HU-A4GQ-01 22 50728946 50728946 C T PLXNB2 Missense_Mutation p.R23H 0.21 tolerated(0.11) possibly_damaging(0.568) TCGA-HU-A4GQ-01 22 50750501 50750501 G A DENND6B 3'UTR 0.30 TCGA-HU-A4GQ-01 22 50873504 50873504 A G PPP6R2 Missense_Mutation p.I505V 0.23 deleterious(0.02) possibly_damaging(0.511) TCGA-HU-A4GQ-01 22 50960987 50960987 C T NCAPH2 Missense_Mutation p.A456V 0.28 tolerated(0.27) benign(0.192) TCGA-HU-A4GQ-01 22 51237125 51237125 G A RPL23AP82 RNA 0.19 TCGA-HU-A4GQ-01 2 101183019 101183019 C - PDCL3 Frame_Shift_Del p.K23Rfs*4 0.14 TCGA-HU-A4GQ-01 2 101587503 101587503 G A NPAS2 Silent p.P369P 0.29 TCGA-HU-A4GQ-01 2 102486181 102486181 C T MAP4K4 Missense_Mutation p.T773M 0.29 deleterious_low_confidence(0.02) probably_damaging(0.997) TCGA-HU-A4GQ-01 2 103013313 103013313 A G IL18R1 Silent p.E531E 0.29 TCGA-HU-A4GQ-01 2 103274237 103274237 G A SLC9A2 Silent p.T168T 0.29 TCGA-HU-A4GQ-01 2 103299895 103299895 G A SLC9A2 Missense_Mutation p.V394I 0.26 tolerated(0.63) probably_damaging(0.997) TCGA-HU-A4GQ-01 2 103324830 103324830 G A SLC9A2 Missense_Mutation p.G774D 0.29 tolerated(0.16) benign(0.001) TCGA-HU-A4GQ-01 2 10918761 10918761 A - ATP6V1C2 Frame_Shift_Del p.K343Rfs*3 0.18 TCGA-HU-A4GQ-01 2 110323432 110323432 T G SEPT10 Missense_Mutation p.Q256P 0.26 tolerated(0.06) benign(0.253) TCGA-HU-A4GQ-01 2 11351916 11351916 C T ROCK2 Silent p.Q698Q 0.31 TCGA-HU-A4GQ-01 2 120005744 120005744 G A STEAP3 Missense_Mutation p.A338T 0.25 tolerated(0.51) benign(0.115) TCGA-HU-A4GQ-01 2 120069198 120069198 C T C2orf76 Missense_Mutation p.A102T 0.07 tolerated(0.32) benign(0.025) TCGA-HU-A4GQ-01 2 120438550 120438550 G A TMEM177 Missense_Mutation p.V41M 0.28 tolerated(0.08) possibly_damaging(0.788) TCGA-HU-A4GQ-01 2 127453674 127453674 C A GYPC Missense_Mutation p.L115I 0.26 deleterious(0.03) possibly_damaging(0.861) TCGA-HU-A4GQ-01 2 128028923 128028923 C T ERCC3 Missense_Mutation p.R645Q 0.29 deleterious(0) probably_damaging(0.987) TCGA-HU-A4GQ-01 2 128030525 128030525 G A ERCC3 Silent p.Y581Y 0.29 TCGA-HU-A4GQ-01 2 128038146 128038146 C T ERCC3 Silent p.A468A 0.35 TCGA-HU-A4GQ-01 2 128466263 128466263 G A WDR33 Nonsense_Mutation p.R1257* 0.24 TCGA-HU-A4GQ-01 2 128480577 128480577 C T WDR33 Missense_Mutation p.G445R 0.31 deleterious(0) unknown(0) TCGA-HU-A4GQ-01 2 128628889 128628889 C T AMMECR1L Missense_Mutation p.R151H 0.24 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 2 129026328 129026328 G A HS6ST1 Missense_Mutation p.T215M 0.33 tolerated(0.05) probably_damaging(0.999) TCGA-HU-A4GQ-01 2 130738414 130738414 G A RAB6C Silent p.T242T 0.22 TCGA-HU-A4GQ-01 2 130878134 130878134 G A POTEF 5'UTR 0.14 TCGA-HU-A4GQ-01 2 130939110 130939110 A G SMPD4 Missense_Mutation p.I22T 0.21 tolerated_low_confidence(0.29) unknown(0) TCGA-HU-A4GQ-01 2 133174993 133174993 G A GPR39 Silent p.V126V 0.22 TCGA-HU-A4GQ-01 2 133636480 133636480 A G NCKAP5 Missense_Mutation p.S197P 0.26 deleterious(0) possibly_damaging(0.837) TCGA-HU-A4GQ-01 2 141143493 141143493 G A LRP1B Silent p.D3500D 0.24 TCGA-HU-A4GQ-01 2 141643823 141643823 A T LRP1B Missense_Mutation p.L1283H 0.26 possibly_damaging(0.869) TCGA-HU-A4GQ-01 2 145157105 145157105 T C ZEB2 Missense_Mutation p.Q550R 0.21 tolerated(0.44) probably_damaging(0.989) TCGA-HU-A4GQ-01 2 14774092 14774092 G A FAM84A 5'UTR 0.29 TCGA-HU-A4GQ-01 2 148683686 148683686 A - ACVR2A Frame_Shift_Del p.K437Rfs*5 0.48 TCGA-HU-A4GQ-01 2 1491596 1491596 G A TPO Missense_Mutation p.G534D 0.31 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GQ-01 2 152468749 152468749 T C NEB Missense_Mutation p.D3919G 0.23 probably_damaging(0.999) TCGA-HU-A4GQ-01 2 157185981 157185981 C T NR4A2 Missense_Mutation p.A240T 0.36 tolerated(0.39) benign(0.004) TCGA-HU-A4GQ-01 2 158399322 158399322 T C ACVR1C Silent p.K332K 0.30 TCGA-HU-A4GQ-01 2 159488414 159488414 C T PKP4 Missense_Mutation p.L435F 0.35 deleterious(0.02) benign(0.444) TCGA-HU-A4GQ-01 2 16082453 16082453 C A MYCN Silent p.G89G 0.20 TCGA-HU-A4GQ-01 2 165476200 165476200 T - GRB14 Frame_Shift_Del p.K107Nfs*3 0.18 TCGA-HU-A4GQ-01 2 1670073 1670073 C T PXDN Missense_Mutation p.V402I 0.23 tolerated(0.25) benign(0.106) TCGA-HU-A4GQ-01 2 170558101 170558102 CT - PHOSPHO2 Frame_Shift_Del p.L208Ffs*8 0.17 TCGA-HU-A4GQ-01 2 172379245 172379245 A G CYBRD1 Missense_Mutation p.I64V 0.07 tolerated(0.44) benign(0.057) TCGA-HU-A4GQ-01 2 176982041 176982041 C T HOXD10 Silent p.T160T 0.21 TCGA-HU-A4GQ-01 2 177016313 177016313 A - HOXD3 5'UTR 0.27 TCGA-HU-A4GQ-01 2 179417885 179417885 T G TTN Silent p.I29914I 0.32 TCGA-HU-A4GQ-01 2 179438692 179438692 C T TTN Missense_Mutation p.R24056H 0.38 TCGA-HU-A4GQ-01 2 179452670 179452670 C T TTN Missense_Mutation p.R21155H 0.39 TCGA-HU-A4GQ-01 2 179474028 179474028 G A TTN Nonsense_Mutation p.R17337* 0.21 TCGA-HU-A4GQ-01 2 179483201 179483201 G A TTN Missense_Mutation p.R15662C 0.16 TCGA-HU-A4GQ-01 2 1795584 1795584 G A MYT1L 3'UTR 0.29 TCGA-HU-A4GQ-01 2 179583532 179583532 A G TTN Missense_Mutation p.V8132A 0.31 TCGA-HU-A4GQ-01 2 179591896 179591896 A G TTN Silent p.T6732T 0.28 TCGA-HU-A4GQ-01 2 179645895 179645895 C T TTN Missense_Mutation p.R1159H 0.22 TCGA-HU-A4GQ-01 2 182766502 182766502 G A SSFA2 Missense_Mutation p.R241H 0.26 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GQ-01 2 183095828 183095828 C A PDE1A Missense_Mutation p.A166S 0.15 tolerated(0.36) benign(0.004) TCGA-HU-A4GQ-01 2 183790402 183790402 C T NCKAP1 3'UTR 0.21 TCGA-HU-A4GQ-01 2 190925048 190925048 C T MSTN Missense_Mutation p.V163I 0.28 tolerated(0.12) benign(0.022) TCGA-HU-A4GQ-01 2 191524601 191524601 T C NAB1 Silent p.G233G 0.33 TCGA-HU-A4GQ-01 2 197597401 197597401 C T CCDC150 3'UTR 0.33 TCGA-HU-A4GQ-01 2 202173902 202173902 G A ALS2CR12 Silent p.F249F 0.22 TCGA-HU-A4GQ-01 2 202589136 202589136 G A ALS2 Missense_Mutation p.R1132C 0.32 tolerated(0.08) probably_damaging(0.991) TCGA-HU-A4GQ-01 2 204131350 204131350 T C CYP20A1 Silent p.G182G 0.25 TCGA-HU-A4GQ-01 2 204801578 204801578 G A ICOS Missense_Mutation p.R14H 0.21 deleterious(0.03) benign(0.005) TCGA-HU-A4GQ-01 2 207027606 207027607 AA - EEF1B2 Frame_Shift_Del 0.27 TCGA-HU-A4GQ-01 2 207570544 207570544 A G DYTN Missense_Mutation p.L117P 0.15 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 2 20823667 20823667 C A HS1BP3 Missense_Mutation p.K303N 0.31 deleterious(0.02) benign(0.021) TCGA-HU-A4GQ-01 2 211089983 211089983 G A ACADL Missense_Mutation p.A2V 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.483) TCGA-HU-A4GQ-01 2 211466978 211466978 G A CPS1 Missense_Mutation p.R593H 0.21 deleterious(0) possibly_damaging(0.907) TCGA-HU-A4GQ-01 2 213872510 213872511 - G IKZF2 Frame_Shift_Ins p.L386Sfs*18 0.19 TCGA-HU-A4GQ-01 2 215593504 215593504 T C BARD1 Missense_Mutation p.N744D 0.17 tolerated(0.19) benign(0.031) TCGA-HU-A4GQ-01 2 216226796 216226796 G A FN1 Missense_Mutation p.R2420C 0.25 deleterious(0) probably_damaging(0.91) TCGA-HU-A4GQ-01 2 216274362 216274362 G T FN1 Silent p.V741V 0.30 TCGA-HU-A4GQ-01 2 216274363 216274363 A T FN1 Missense_Mutation p.V741D 0.30 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GQ-01 2 216965029 216965029 G A TMEM169 Missense_Mutation p.A220T 0.28 tolerated(0.27) benign(0.014) TCGA-HU-A4GQ-01 2 219209543 219209543 C A PNKD Missense_Mutation p.L333M 0.16 deleterious(0.03) benign(0.323) TCGA-HU-A4GQ-01 2 219295520 219295520 G A VIL1 Missense_Mutation p.V341I 0.32 tolerated(0.97) benign(0.003) TCGA-HU-A4GQ-01 2 219614783 219614783 T C TTLL4 Silent p.R929R 0.22 TCGA-HU-A4GQ-01 2 220088634 220088634 G A ATG9A Missense_Mutation p.S459L 0.22 tolerated(0.56) benign(0.118) TCGA-HU-A4GQ-01 2 220348545 220348545 C T SPEG Silent p.L2120L 0.56 TCGA-HU-A4GQ-01 2 223773456 223773456 C T ACSL3 5'UTR 0.17 TCGA-HU-A4GQ-01 2 225368388 225368388 T - CUL3 Frame_Shift_Del p.N453Tfs*2 0.31 TCGA-HU-A4GQ-01 2 225729790 225729790 A - DOCK10 Frame_Shift_Del p.F424Lfs*2 0.22 TCGA-HU-A4GQ-01 2 226378307 226378307 A G NYAP2 Missense_Mutation p.S148G 0.30 tolerated(0.07) benign(0.037) TCGA-HU-A4GQ-01 2 227773542 227773542 T - RHBDD1 Frame_Shift_Del p.S222Pfs*47 0.25 TCGA-HU-A4GQ-01 2 228173957 228173957 G A COL4A3 Missense_Mutation p.V1560I 0.31 unknown(0) TCGA-HU-A4GQ-01 2 228882972 228882972 G A SPHKAP Silent p.S866S 0.28 TCGA-HU-A4GQ-01 2 230456366 230456366 G A DNER Missense_Mutation p.T172M 0.25 deleterious(0.02) possibly_damaging(0.875) TCGA-HU-A4GQ-01 2 231775353 231775353 C T GPR55 Missense_Mutation p.V109I 0.29 tolerated(1) benign(0.008) TCGA-HU-A4GQ-01 2 232880239 232880239 C T DIS3L2 Missense_Mutation p.A23V 0.24 tolerated_low_confidence(0.62) benign(0) TCGA-HU-A4GQ-01 2 233199145 233199145 G A DIS3L2 Missense_Mutation p.R742H 0.25 deleterious(0.01) probably_damaging(0.973) TCGA-HU-A4GQ-01 2 233243636 233271722 2:233243636-233271722 - ALPP large deletion 0.11 TCGA-HU-A4GQ-01 2 234365952 234365952 G - DGKD Frame_Shift_Del p.G855Vfs*48 0.42 TCGA-HU-A4GQ-01 2 234622259 234622259 C A UGT1A5 Missense_Mutation p.L208M 0.28 tolerated(0.26) possibly_damaging(0.612) TCGA-HU-A4GQ-01 2 234652344 234652344 C T UGT1A10 Intron 0.27 TCGA-HU-A4GQ-01 2 234676526 234676526 C T UGT1A10 Missense_Mutation p.S340L 0.19 tolerated(0.16) possibly_damaging(0.637) TCGA-HU-A4GQ-01 2 236626247 236626247 G A AGAP1 Missense_Mutation p.R90Q 0.21 deleterious(0) probably_damaging(0.994) TCGA-HU-A4GQ-01 2 237490003 237490003 G A ACKR3 Missense_Mutation p.V299I 0.28 tolerated(0.59) benign(0.015) TCGA-HU-A4GQ-01 2 238296700 238296700 G C COL6A3 Missense_Mutation p.I279M 0.22 possibly_damaging(0.714) TCGA-HU-A4GQ-01 2 239237867 239237867 C T TRAF3IP1 Nonsense_Mutation p.R267* 0.20 TCGA-HU-A4GQ-01 2 240111758 240111758 G A HDAC4 Missense_Mutation p.A37V 0.40 tolerated(0.38) benign(0.194) TCGA-HU-A4GQ-01 2 241534459 241534459 C T CAPN10 Missense_Mutation p.T339M 0.28 deleterious(0) benign(0.327) TCGA-HU-A4GQ-01 2 241537333 241537333 C T CAPN10 Missense_Mutation p.A591V 0.38 tolerated(0.34) benign(0.008) TCGA-HU-A4GQ-01 2 241817502 241817502 G A AGXT Missense_Mutation p.V336I 0.28 tolerated(0.31) benign(0.008) TCGA-HU-A4GQ-01 2 241826549 241826549 G A C2orf54 Missense_Mutation p.R428W 0.18 deleterious(0.02) probably_damaging(0.999) TCGA-HU-A4GQ-01 2 24244545 24244545 G A MFSD2B Missense_Mutation p.V237M 0.37 deleterious(0.01) possibly_damaging(0.88) TCGA-HU-A4GQ-01 2 242606145 242606145 C T ATG4B Silent p.A208A 0.14 TCGA-HU-A4GQ-01 2 242610802 242610802 G A ATG4B Missense_Mutation p.V364I 0.12 tolerated(0.11) benign(0.145) TCGA-HU-A4GQ-01 2 242742903 242742903 G A GAL3ST2 Silent p.S173S 0.35 TCGA-HU-A4GQ-01 2 24881612 24881612 G A NCOA1 Silent p.S22S 0.33 TCGA-HU-A4GQ-01 2 26950641 26950641 G A KCNK3 Silent p.E130E 0.28 TCGA-HU-A4GQ-01 2 27292517 27292517 C - AGBL5 Frame_Shift_Del p.R813Gfs*68 0.25 TCGA-HU-A4GQ-01 2 27430161 27430161 C T SLC5A6 Missense_Mutation p.V120I 0.18 tolerated(0.17) benign(0.03) TCGA-HU-A4GQ-01 2 27439715 27439715 T C ATRAID Missense_Mutation p.S252P 0.25 tolerated(0.06) possibly_damaging(0.898) TCGA-HU-A4GQ-01 2 27447223 27447223 G A CAD Silent p.R373R 0.14 TCGA-HU-A4GQ-01 2 27600873 27600873 G A ZNF513 Missense_Mutation p.R389C 0.25 deleterious(0.01) benign(0.049) TCGA-HU-A4GQ-01 2 29041919 29041919 G A SPDYA Missense_Mutation p.D81N 0.22 tolerated(0.13) benign(0.126) TCGA-HU-A4GQ-01 2 29404681 29404681 C T CLIP4 Silent p.N680N 0.20 TCGA-HU-A4GQ-01 2 30863019 30863019 C T LCLAT1 Missense_Mutation p.A260V 0.30 deleterious(0) probably_damaging(0.917) TCGA-HU-A4GQ-01 2 33740192 33740192 G A RASGRP3 5'UTR 0.11 TCGA-HU-A4GQ-01 2 3750175 3750175 G A ALLC 3'UTR 0.16 TCGA-HU-A4GQ-01 2 37599550 37599550 G A QPCT Missense_Mutation p.R292Q 0.27 tolerated(1) benign(0) TCGA-HU-A4GQ-01 2 39249715 39249715 G A SOS1 Silent p.Y618Y 0.18 TCGA-HU-A4GQ-01 2 44078854 44078854 C T ABCG8 Missense_Mutation p.R152C 0.30 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GQ-01 2 45233230 45233230 G T SIX2 3'UTR 0.15 TCGA-HU-A4GQ-01 2 48023188 48023190 GAA - MSH6 In_Frame_Del p.E207del 0.23 TCGA-HU-A4GQ-01 2 48687004 48687004 C T PPP1R21 Missense_Mutation p.R163W 0.20 deleterious(0.02) possibly_damaging(0.556) TCGA-HU-A4GQ-01 2 54855380 54855380 C T SPTBN1 Silent p.D597D 0.16 TCGA-HU-A4GQ-01 2 54895523 54895523 C T SPTBN1 Silent p.S2304S 0.21 TCGA-HU-A4GQ-01 2 55561924 55561925 - T CCDC88A Frame_Shift_Ins p.T678Nfs*4 0.23 TCGA-HU-A4GQ-01 2 60773219 60773219 T C BCL11A Missense_Mutation p.E91G 0.27 tolerated(0.06) probably_damaging(0.985) TCGA-HU-A4GQ-01 2 677290 677290 G A TMEM18 Missense_Mutation p.T19M 0.24 tolerated(0.18) benign(0.029) TCGA-HU-A4GQ-01 2 68873256 68873256 C T PROKR1 Silent p.I101I 0.28 TCGA-HU-A4GQ-01 2 69177322 69177322 T - GKN2 Frame_Shift_Del p.N47Ifs*38 0.29 TCGA-HU-A4GQ-01 2 70441502 70441502 G A TIA1 Missense_Mutation p.A338V 0.33 tolerated(0.16) benign(0.15) TCGA-HU-A4GQ-01 2 71209747 71209747 T G ANKRD53 Missense_Mutation p.F275V 0.26 deleterious(0.01) possibly_damaging(0.623) TCGA-HU-A4GQ-01 2 71839776 71839776 G A DYSF Silent p.L1409L 0.32 TCGA-HU-A4GQ-01 2 73145444 73145444 C A EMX1 Missense_Mutation p.P155T 0.53 tolerated(0.16) possibly_damaging(0.71) TCGA-HU-A4GQ-01 2 73151504 73151504 G A EMX1 Missense_Mutation p.R196H 0.33 deleterious(0) possibly_damaging(0.754) TCGA-HU-A4GQ-01 2 73761965 73761965 T A ALMS1 Missense_Mutation p.L3265M 0.33 probably_damaging(0.994) TCGA-HU-A4GQ-01 2 73957865 73957865 T A TPRKB Splice_Site p.X89_splice 0.29 TCGA-HU-A4GQ-01 2 74058054 74058054 C T STAMBP Missense_Mutation p.A24V 0.18 tolerated(0.2) benign(0.013) TCGA-HU-A4GQ-01 2 74459682 74459682 C A SLC4A5 Silent p.T896T 0.06 TCGA-HU-A4GQ-01 2 85578126 85578126 C T RETSAT Missense_Mutation p.R125H 0.19 tolerated(0.05) benign(0.015) TCGA-HU-A4GQ-01 2 85836155 85836155 C T C2orf68 Silent p.S138S 0.18 TCGA-HU-A4GQ-01 2 90212137 90212137 G T IGKV3D-11 Missense_Mutation p.G77C 0.32 deleterious(0) probably_damaging(0.965) TCGA-HU-A4GQ-01 2 97025920 97025921 - A NCAPH Frame_Shift_Ins p.D469Rfs*3 0.13 TCGA-HU-A4GQ-01 2 97462748 97462748 G T CNNM4 Splice_Site p.X468_splice 0.15 TCGA-HU-A4GQ-01 2 97462840 97462840 C T CNNM4 Silent p.D498D 0.19 TCGA-HU-A4GQ-01 2 97751578 97751578 G A FAHD2B Silent p.H181H 0.20 TCGA-HU-A4GQ-01 2 99953983 99953983 A G EIF5B 5'UTR 0.31 TCGA-HU-A4GQ-01 3 100018114 100018114 G A TBC1D23 Missense_Mutation p.R344H 0.18 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 3 101060606 101060606 C T SENP7 Silent p.A708A 0.34 TCGA-HU-A4GQ-01 3 10387187 10387187 C T ATP2B2 Missense_Mutation p.V862I 0.31 deleterious(0) probably_damaging(0.987) TCGA-HU-A4GQ-01 3 112357269 112357269 T - CCDC80 Frame_Shift_Del p.K495Rfs*60 0.20 TCGA-HU-A4GQ-01 3 113344997 113344997 G T SIDT1 Missense_Mutation p.D786Y 0.26 deleterious(0.01) possibly_damaging(0.515) TCGA-HU-A4GQ-01 3 114014391 114014391 G T TIGIT Splice_Site p.X21_splice 0.25 TCGA-HU-A4GQ-01 3 120959299 120959299 A G STXBP5L Missense_Mutation p.S449G 0.25 tolerated(0.06) benign(0.007) TCGA-HU-A4GQ-01 3 121643200 121643201 - T SLC15A2 Frame_Shift_Ins p.V338Cfs*23 0.23 TCGA-HU-A4GQ-01 3 122641181 122641181 G T SEMA5B Silent p.P516P 0.32 TCGA-HU-A4GQ-01 3 123010121 123010121 C T ADCY5 Missense_Mutation p.E1056K 0.26 deleterious(0.02) possibly_damaging(0.579) TCGA-HU-A4GQ-01 3 123987740 123987740 C T KALRN Missense_Mutation p.L201F 0.14 deleterious(0) probably_damaging(0.953) TCGA-HU-A4GQ-01 3 123988090 123988090 G T KALRN Missense_Mutation p.Q317H 0.24 deleterious(0) benign(0.316) TCGA-HU-A4GQ-01 3 124174121 124174121 C T KALRN Missense_Mutation p.T1215M 0.20 deleterious(0.03) possibly_damaging(0.738) TCGA-HU-A4GQ-01 3 124492757 124492757 G T ITGB5 Missense_Mutation p.H566N 0.23 tolerated(0.32) benign(0.016) TCGA-HU-A4GQ-01 3 124739807 124739808 - G HEG1 Frame_Shift_Ins p.K361Qfs*26 0.30 TCGA-HU-A4GQ-01 3 125249353 125249353 T C OSBPL11 3'UTR 0.31 TCGA-HU-A4GQ-01 3 126730826 126730826 C T PLXNA1 Missense_Mutation p.T713M 0.21 tolerated(0.07) possibly_damaging(0.724) TCGA-HU-A4GQ-01 3 126749160 126749160 G A PLXNA1 Silent p.P1712P 0.25 TCGA-HU-A4GQ-01 3 127295889 127295889 G A TPRA1 Missense_Mutation p.R97W 0.22 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 3 127394896 127394896 G A ABTB1 Missense_Mutation p.D87N 0.19 tolerated(0.61) benign(0.006) TCGA-HU-A4GQ-01 3 127981010 127981010 G - EEFSEC Frame_Shift_Del p.G190Dfs*20 0.19 TCGA-HU-A4GQ-01 3 128628217 128628217 T C ACAD9 Missense_Mutation p.Y506H 0.28 tolerated(0.48) benign(0.002) TCGA-HU-A4GQ-01 3 129280700 129280700 G A PLXND1 Silent p.D1624D 0.16 TCGA-HU-A4GQ-01 3 12978054 12978054 G A IQSEC1 Silent p.R168R 0.10 TCGA-HU-A4GQ-01 3 133465297 133465297 G A TF Missense_Mutation p.V5M 0.30 tolerated(0.06) possibly_damaging(0.623) TCGA-HU-A4GQ-01 3 13363234 13363234 T C NUP210 Missense_Mutation p.S1673G 0.21 tolerated(0.93) benign(0.001) TCGA-HU-A4GQ-01 3 13367348 13367348 C T NUP210 Missense_Mutation p.G1531R 0.22 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GQ-01 3 133896849 133896849 A G RYK Missense_Mutation p.M415T 0.31 tolerated(0.52) possibly_damaging(0.653) TCGA-HU-A4GQ-01 3 134270808 134270808 G A CEP63 Missense_Mutation p.R474H 0.21 tolerated(0.25) benign(0.011) TCGA-HU-A4GQ-01 3 13538284 13538284 C A HDAC11 Missense_Mutation p.L101I 0.18 tolerated(0.12) benign(0.258) TCGA-HU-A4GQ-01 3 135870358 135870358 T - MSL2 Frame_Shift_Del p.K455Nfs*37 0.25 TCGA-HU-A4GQ-01 3 136046531 136046531 A G PCCB Missense_Mutation p.N472S 0.33 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-HU-A4GQ-01 3 136240211 136240212 - T STAG1 Frame_Shift_Ins p.F174Ifs*7 0.21 TCGA-HU-A4GQ-01 3 1371501 1371501 A - CNTN6 Frame_Shift_Del p.K418Sfs*63 0.38 TCGA-HU-A4GQ-01 3 137742517 137742517 C T CLDN18 Nonsense_Mutation p.R80* 0.26 TCGA-HU-A4GQ-01 3 142278281 142278281 C T ATR Missense_Mutation p.R515H 0.14 tolerated_low_confidence(0.53) benign(0) TCGA-HU-A4GQ-01 3 14709017 14709017 C T CCDC174 Missense_Mutation p.R271C 0.27 deleterious(0) probably_damaging(0.965) TCGA-HU-A4GQ-01 3 147108942 147108942 G A ZIC4 Silent p.S310S 0.30 TCGA-HU-A4GQ-01 3 149290774 149290774 T - WWTR1 Frame_Shift_Del p.I149Sfs*11 0.29 TCGA-HU-A4GQ-01 3 150916134 150916134 T G GPR171 3'UTR 0.27 TCGA-HU-A4GQ-01 3 150917110 150917110 A - GPR171 Frame_Shift_Del p.Y22Ifs*2 0.23 TCGA-HU-A4GQ-01 3 154002398 154002398 G A DHX36 Missense_Mutation p.H756Y 0.21 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 3 157155333 157155333 G A PTX3 Silent p.S54S 0.24 TCGA-HU-A4GQ-01 3 158384428 158384428 T - LXN 3'UTR 0.17 TCGA-HU-A4GQ-01 3 160958926 160958926 C T NMD3 Silent p.H282H 0.22 TCGA-HU-A4GQ-01 3 16254232 16254232 T G GALNT15 Missense_Mutation p.F452V 0.27 deleterious(0.02) probably_damaging(0.997) TCGA-HU-A4GQ-01 3 16269119 16269119 T C GALNT15 3'UTR 0.55 TCGA-HU-A4GQ-01 3 171379954 171379954 G A PLD1 Missense_Mutation p.R746C 0.23 deleterious(0) possibly_damaging(0.88) TCGA-HU-A4GQ-01 3 172365825 172365826 - T NCEH1 Frame_Shift_Ins p.S105Kfs*16 0.29 TCGA-HU-A4GQ-01 3 173996996 173996996 G A NLGN1 Missense_Mutation p.S402N 0.32 tolerated(0.67) benign(0) TCGA-HU-A4GQ-01 3 178916890 178916890 C T PIK3CA Missense_Mutation p.R93W 0.26 deleterious(0) probably_damaging(0.997) TCGA-HU-A4GQ-01 3 178952006 178952006 T C PIK3CA Missense_Mutation p.Y1021H 0.32 deleterious(0) possibly_damaging(0.847) TCGA-HU-A4GQ-01 3 179288016 179288016 A - ACTL6A Frame_Shift_Del p.N90Mfs*47 0.16 TCGA-HU-A4GQ-01 3 180666228 180666228 A - FXR1 Frame_Shift_Del p.N124Ifs*14 0.50 TCGA-HU-A4GQ-01 3 182584192 182584192 C A ATP11B Missense_Mutation p.S527Y 0.28 deleterious(0) probably_damaging(0.996) TCGA-HU-A4GQ-01 3 182586903 182586903 C T ATP11B Missense_Mutation p.R576C 0.24 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 3 183027529 183027529 T C MCF2L2 Missense_Mutation p.H363R 0.05 tolerated(0.07) benign(0.003) TCGA-HU-A4GQ-01 3 183209684 183209685 - G KLHL6 3'UTR 0.28 TCGA-HU-A4GQ-01 3 183887922 183887922 C - DVL3 Frame_Shift_Del p.P544Rfs*124 0.25 TCGA-HU-A4GQ-01 3 183888240 183888240 G A DVL3 Silent p.P616P 0.42 TCGA-HU-A4GQ-01 3 183899533 183899533 C T AP2M1 Nonsense_Mutation p.R253* 0.29 TCGA-HU-A4GQ-01 3 183995760 183995760 C T ECE2 Missense_Mutation p.R294C 0.36 tolerated(0.17) possibly_damaging(0.77) TCGA-HU-A4GQ-01 3 184040890 184040890 G A EIF4G1 Missense_Mutation p.R657Q 0.29 deleterious(0.01) benign(0.177) TCGA-HU-A4GQ-01 3 184042855 184042855 C T EIF4G1 Missense_Mutation p.R944C 0.26 deleterious(0) probably_damaging(0.983) TCGA-HU-A4GQ-01 3 184072414 184072414 T C CLCN2 Missense_Mutation p.M477V 0.22 tolerated(0.11) benign(0.05) TCGA-HU-A4GQ-01 3 184090422 184090422 G T THPO Missense_Mutation p.P314H 0.29 deleterious_low_confidence(0) possibly_damaging(0.893) TCGA-HU-A4GQ-01 3 184104713 184104713 C T CHRD Silent p.C759C 0.24 TCGA-HU-A4GQ-01 3 184428773 184428773 G A MAGEF1 Silent p.D279D 0.10 TCGA-HU-A4GQ-01 3 185190867 185190867 G A MAP3K13 Missense_Mutation p.R583Q 0.23 deleterious(0.01) probably_damaging(0.997) TCGA-HU-A4GQ-01 3 185635403 185635403 T G TRA2B 3'UTR 0.24 TCGA-HU-A4GQ-01 3 186395317 186395317 G A HRG Missense_Mutation p.C408Y 0.42 tolerated(1) benign(0) TCGA-HU-A4GQ-01 3 186953732 186953732 C T MASP1 Missense_Mutation p.V643I 0.21 tolerated(0.35) benign(0.037) TCGA-HU-A4GQ-01 3 187440320 187440320 C T BCL6 Missense_Mutation p.A683T 0.28 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GQ-01 3 195486029 195486029 C T MUC4 Silent p.T4984T 0.24 TCGA-HU-A4GQ-01 3 195495900 195495900 A C MUC4 Missense_Mutation p.F4508V 0.17 benign(0.007) TCGA-HU-A4GQ-01 3 195590985 195590985 C A TNK2 3'UTR 0.05 TCGA-HU-A4GQ-01 3 196236458 196236458 G A SMCO1 Missense_Mutation p.H45Y 0.23 tolerated(1) benign(0.001) TCGA-HU-A4GQ-01 3 196242058 196242058 A G SMCO1 Missense_Mutation p.L8P 0.32 deleterious(0.03) benign(0.005) TCGA-HU-A4GQ-01 3 196735805 196735805 C T MFI2 Silent p.V519V 0.29 TCGA-HU-A4GQ-01 3 197239184 197239184 C T BDH1 Missense_Mutation p.R205H 0.26 deleterious(0.04) possibly_damaging(0.548) TCGA-HU-A4GQ-01 3 197444992 197444992 G A KIAA0226 Silent p.H25H 0.31 TCGA-HU-A4GQ-01 3 30733148 30733149 AG - TGFBR2 3'UTR 0.22 TCGA-HU-A4GQ-01 3 36756949 36756949 T C DCLK3 Missense_Mutation p.Q606R 0.23 deleterious(0.04) possibly_damaging(0.585) TCGA-HU-A4GQ-01 3 38748813 38748813 T G SCN10A Missense_Mutation p.K1448T 0.16 deleterious(0) probably_damaging(0.912) TCGA-HU-A4GQ-01 3 39177934 39177936 AAG - TTC21A In_Frame_Del p.K1019del 0.22 TCGA-HU-A4GQ-01 3 39431957 39431957 C T SLC25A38 Missense_Mutation p.R79C 0.24 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GQ-01 3 42777361 42777361 C T CCDC13 Silent p.L403L 0.24 TCGA-HU-A4GQ-01 3 44540874 44540874 T - ZNF852 Frame_Shift_Del p.K465Nfs*32 0.27 TCGA-HU-A4GQ-01 3 44684835 44684836 - T ZNF197 Frame_Shift_Ins p.C739Lfs*25 0.22 TCGA-HU-A4GQ-01 3 44803061 44803061 G A KIAA1143 Missense_Mutation p.P12S 0.22 deleterious(0) probably_damaging(0.991) TCGA-HU-A4GQ-01 3 45266858 45266858 T G TMEM158 Missense_Mutation p.E221A 0.35 deleterious_low_confidence(0.01) benign(0.244) TCGA-HU-A4GQ-01 3 45636836 45636836 G A LIMD1 Silent p.A155A 0.26 TCGA-HU-A4GQ-01 3 45785048 45785048 G A SACM1L Missense_Mutation p.A551T 0.24 tolerated(0.05) benign(0.05) TCGA-HU-A4GQ-01 3 46009504 46009504 G A FYCO1 Missense_Mutation p.A441V 0.29 deleterious(0.03) benign(0.124) TCGA-HU-A4GQ-01 3 46245605 46245605 T - CCR1 Frame_Shift_Del p.N67Tfs*2 0.24 TCGA-HU-A4GQ-01 3 47281442 47281442 A G KIF9 Intron 0.31 TCGA-HU-A4GQ-01 3 47378211 47378211 C T KLHL18 Missense_Mutation p.T362I 0.19 tolerated(0.24) benign(0.005) TCGA-HU-A4GQ-01 3 47461185 47461185 C T SCAP Missense_Mutation p.V525I 0.21 deleterious(0) probably_damaging(0.916) TCGA-HU-A4GQ-01 3 48451076 48451076 G A PLXNB1 Missense_Mutation p.P1948S 0.25 deleterious(0) probably_damaging(0.986) TCGA-HU-A4GQ-01 3 48696881 48696881 T C CELSR3 Missense_Mutation p.N1063D 0.24 deleterious(0) probably_damaging(0.953) TCGA-HU-A4GQ-01 3 48698957 48698957 G A CELSR3 Missense_Mutation p.R371C 0.17 deleterious(0) probably_damaging(0.951) TCGA-HU-A4GQ-01 3 48699280 48699280 C T CELSR3 Missense_Mutation p.R263H 0.20 tolerated_low_confidence(0.06) benign(0.001) TCGA-HU-A4GQ-01 3 49068057 49068057 C T QRICH1 Missense_Mutation p.R720Q 0.28 deleterious(0.03) possibly_damaging(0.456) TCGA-HU-A4GQ-01 3 49141346 49141346 G A QARS Missense_Mutation p.R109W 0.21 deleterious(0) possibly_damaging(0.629) TCGA-HU-A4GQ-01 3 49166108 49166108 G A LAMB2 Missense_Mutation p.R626C 0.28 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 3 49167667 49167667 G A LAMB2 Missense_Mutation p.R408C 0.18 deleterious(0.04) possibly_damaging(0.582) TCGA-HU-A4GQ-01 3 49742583 49742583 C T RNF123 Missense_Mutation p.T709M 0.20 tolerated(0.24) possibly_damaging(0.855) TCGA-HU-A4GQ-01 3 49755649 49755649 C T AMIGO3 Missense_Mutation p.R417H 0.21 tolerated(0.6) benign(0.001) TCGA-HU-A4GQ-01 3 49755895 49755895 C T AMIGO3 Missense_Mutation p.G335D 0.29 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 3 50222097 50222097 C T SEMA3F Missense_Mutation p.R436C 0.24 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 3 50338110 50338110 C T HYAL1 Missense_Mutation p.R371H 0.36 deleterious(0) probably_damaging(0.985) TCGA-HU-A4GQ-01 3 51417604 51417604 C - DOCK3 Frame_Shift_Del p.P1852Qfs*45 0.22 TCGA-HU-A4GQ-01 3 51418820 51418820 C - DOCK3 Frame_Shift_Del p.K1976Sfs*185 0.28 TCGA-HU-A4GQ-01 3 52183326 52183326 C T POC1A Missense_Mutation p.V119M 0.33 deleterious(0) probably_damaging(0.939) TCGA-HU-A4GQ-01 3 52246368 52246368 G T ALAS1 Missense_Mutation p.R565L 0.22 deleterious(0.02) probably_damaging(0.963) TCGA-HU-A4GQ-01 3 52255211 52255211 C T TLR9 3'UTR 0.22 TCGA-HU-A4GQ-01 3 52326884 52326884 G A GLYCTK Silent p.P438P 0.26 TCGA-HU-A4GQ-01 3 52431783 52431783 C T DNAH1 Missense_Mutation p.H3950Y 0.18 probably_damaging(0.999) TCGA-HU-A4GQ-01 3 52433040 52433040 A G DNAH1 Silent p.S4088S 0.17 TCGA-HU-A4GQ-01 3 52437205 52437205 C T BAP1 Silent p.T613T 0.24 TCGA-HU-A4GQ-01 3 52540747 52540747 A G STAB1 Missense_Mutation p.R624G 0.19 tolerated(0.22) benign(0.069) TCGA-HU-A4GQ-01 3 52878871 52878871 C T TMEM110 Missense_Mutation p.V172I 0.19 tolerated(0.09) possibly_damaging(0.481) TCGA-HU-A4GQ-01 3 53263034 53263034 C T TKT Missense_Mutation p.A470T 0.26 deleterious(0.04) possibly_damaging(0.561) TCGA-HU-A4GQ-01 3 53810059 53810059 T G CACNA1D Missense_Mutation p.L1470R 0.24 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GQ-01 3 54596945 54596945 T A CACNA2D3 Missense_Mutation p.F221L 0.26 deleterious(0.02) probably_damaging(0.987) TCGA-HU-A4GQ-01 3 56627979 56627979 C T CCDC66 Missense_Mutation p.R443C 0.31 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 3 56785338 56785339 - G ARHGEF3 Frame_Shift_Ins p.L208Sfs*3 0.13 TCGA-HU-A4GQ-01 3 58368270 58368271 - A PXK Frame_Shift_Ins p.L80Ifs*4 0.24 TCGA-HU-A4GQ-01 3 64607996 64607996 G A ADAMTS9 Missense_Mutation p.S855L 0.22 tolerated(0.09) possibly_damaging(0.879) TCGA-HU-A4GQ-01 3 66457835 66457835 C T LRIG1 Missense_Mutation p.S339N 0.35 tolerated(0.15) benign(0.1) TCGA-HU-A4GQ-01 3 69072309 69072309 G T TMF1 3'UTR 0.31 TCGA-HU-A4GQ-01 3 71803255 71803255 G T GPR27 Missense_Mutation p.G19C 0.42 tolerated(0.17) unknown(0) TCGA-HU-A4GQ-01 3 73432926 73432926 G A PDZRN3 Missense_Mutation p.R931C 0.38 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 3 7456819 7456819 A - GRM7 Frame_Shift_Del p.E384Kfs*28 0.23 TCGA-HU-A4GQ-01 3 87017929 87017929 G T VGLL3 Missense_Mutation p.P250T 0.32 tolerated(0.44) benign(0.001) TCGA-HU-A4GQ-01 3 88040823 88040823 T - HTR1F Frame_Shift_Del p.F310Lfs*2 0.21 TCGA-HU-A4GQ-01 3 95374367 95374367 T G MTHFD2P1 RNA 0.37 TCGA-HU-A4GQ-01 3 9547708 9547708 C T LHFPL4 Missense_Mutation p.V196M 0.31 deleterious(0) possibly_damaging(0.743) TCGA-HU-A4GQ-01 3 9594083 9594083 G A LHFPL4 Missense_Mutation p.A94V 0.29 tolerated(0.16) possibly_damaging(0.547) TCGA-HU-A4GQ-01 3 9710417 9710417 G A MTMR14 Silent p.S144S 0.21 TCGA-HU-A4GQ-01 3 97356829 97356829 G A EPHA6 Missense_Mutation p.R896Q 0.26 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GQ-01 3 9807580 9807580 G A OGG1 Missense_Mutation p.G346R 0.22 tolerated_low_confidence(0.12) probably_damaging(0.956) TCGA-HU-A4GQ-01 3 9822135 9822135 C T TADA3 Missense_Mutation p.R402Q 0.20 deleterious(0.01) possibly_damaging(0.718) TCGA-HU-A4GQ-01 4 10076944 10076944 C T WDR1 3'UTR 0.37 TCGA-HU-A4GQ-01 4 106863786 106863786 T C NPNT Silent p.S392S 0.25 TCGA-HU-A4GQ-01 4 108615150 108615150 G A PAPSS1 Missense_Mutation p.A63V 0.32 deleterious(0) probably_damaging(0.933) TCGA-HU-A4GQ-01 4 109000672 109000672 T C LEF1 Missense_Mutation p.H274R 0.21 tolerated(0.34) possibly_damaging(0.87) TCGA-HU-A4GQ-01 4 113356326 113356326 A - ALPK1 Frame_Shift_Del p.K1021Nfs*18 0.20 TCGA-HU-A4GQ-01 4 114294316 114294316 C T ANK2 Missense_Mutation p.T3894I 0.21 benign(0.169) TCGA-HU-A4GQ-01 4 114378718 114378718 A C CAMK2D Silent p.A402A 0.29 TCGA-HU-A4GQ-01 4 118005517 118005517 T - TRAM1L1 Frame_Shift_Del p.R345Efs*14 0.22 TCGA-HU-A4GQ-01 4 119952894 119952894 C - SYNPO2 Frame_Shift_Del p.Q990Rfs*13 0.23 TCGA-HU-A4GQ-01 4 122820840 122820840 A G TRPC3 Missense_Mutation p.F825S 0.20 tolerated(0.39) benign(0.001) TCGA-HU-A4GQ-01 4 123283310 123283310 C T KIAA1109 Silent p.L4976L 0.24 TCGA-HU-A4GQ-01 4 123748453 123748453 C T FGF2 Missense_Mutation p.R175C 0.16 deleterious(0) probably_damaging(0.99) TCGA-HU-A4GQ-01 4 123855712 123855712 T - SPATA5 Frame_Shift_Del p.Y324Ifs*27 0.24 TCGA-HU-A4GQ-01 4 129127627 129127627 A - LARP1B Frame_Shift_Del p.K787Nfs*26 0.34 TCGA-HU-A4GQ-01 4 134073077 134073077 G A PCDH10 Silent p.A594A 0.31 TCGA-HU-A4GQ-01 4 1348915 1348915 G A UVSSA Missense_Mutation p.R353H 0.36 deleterious(0) probably_damaging(0.991) TCGA-HU-A4GQ-01 4 141483361 141483361 C T UCP1 Silent p.T265T 0.05 TCGA-HU-A4GQ-01 4 142054011 142054011 C T RNF150 5'Flank 0.46 TCGA-HU-A4GQ-01 4 144336783 144336783 A - GAB1 Frame_Shift_Del p.E78Sfs*20 0.16 TCGA-HU-A4GQ-01 4 146059083 146059083 C T OTUD4 Silent p.T883T 0.26 TCGA-HU-A4GQ-01 4 147215169 147215169 T C SLC10A7 Missense_Mutation p.M212V 0.30 deleterious(0.04) benign(0.016) TCGA-HU-A4GQ-01 4 149357438 149357438 G A NR3C2 Missense_Mutation p.P192L 0.20 tolerated_low_confidence(0.08) probably_damaging(0.913) TCGA-HU-A4GQ-01 4 151199033 151199033 G A LRBA Missense_Mutation p.R2825W 0.26 deleterious(0) probably_damaging(0.997) TCGA-HU-A4GQ-01 4 155256132 155256133 - A DCHS2 Frame_Shift_Ins p.Q369Pfs*8 0.20 TCGA-HU-A4GQ-01 4 155507087 155507087 G A FGA Silent p.G498G 0.28 TCGA-HU-A4GQ-01 4 155527932 155527932 A C FGG Missense_Mutation p.C352G 0.30 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 4 159533352 159533352 C T RXFP1 Silent p.L203L 0.16 TCGA-HU-A4GQ-01 4 169433473 169433473 T C PALLD Missense_Mutation p.F273S 0.23 deleterious(0) probably_damaging(0.942) TCGA-HU-A4GQ-01 4 170041971 170041971 T G SH3RF1 Silent p.R506R 0.19 TCGA-HU-A4GQ-01 4 177116614 177116614 C A SPATA4 Missense_Mutation p.G34W 0.32 deleterious(0.02) possibly_damaging(0.701) TCGA-HU-A4GQ-01 4 1807545 1807545 C - FGFR3 Frame_Shift_Del p.P575Rfs*53 0.26 TCGA-HU-A4GQ-01 4 1843332 1843332 G A LETM1 Silent p.R112R 0.29 TCGA-HU-A4GQ-01 4 186294142 186294142 C T LRP2BP Missense_Mutation p.R224Q 0.26 tolerated(0.27) benign(0.035) TCGA-HU-A4GQ-01 4 189061103 189061103 G A TRIML1 Missense_Mutation p.A131T 0.17 deleterious(0.02) benign(0.006) TCGA-HU-A4GQ-01 4 1989662 1989662 C T NELFA Missense_Mutation p.R217Q 0.50 deleterious(0.03) probably_damaging(0.913) TCGA-HU-A4GQ-01 4 20555573 20555573 A - SLIT2 Frame_Shift_Del p.K904Nfs*13 0.20 TCGA-HU-A4GQ-01 4 24550501 24550502 - T DHX15 Frame_Shift_Ins p.Q409Tfs*14 0.17 TCGA-HU-A4GQ-01 4 25671387 25671387 T G SLC34A2 Missense_Mutation p.F252V 0.30 deleterious(0.02) benign(0.196) TCGA-HU-A4GQ-01 4 26997036 26997036 T C STIM2 Silent p.L145L 0.28 TCGA-HU-A4GQ-01 4 3432560 3432560 C T RGS12 Missense_Mutation p.T1331M 0.24 tolerated(0.26) benign(0.243) TCGA-HU-A4GQ-01 4 3516517 3516517 C T LRPAP1 Missense_Mutation p.A325T 0.23 tolerated(0.3) benign(0.021) TCGA-HU-A4GQ-01 4 37962494 37962494 A G PTTG2 Missense_Mutation p.M147V 0.28 deleterious(0.03) benign(0.079) TCGA-HU-A4GQ-01 4 38016406 38016406 A G TBC1D1 Missense_Mutation p.M232V 0.23 tolerated(0.35) benign(0.02) TCGA-HU-A4GQ-01 4 38690414 38690414 G A KLF3 Missense_Mutation p.R89Q 0.24 tolerated(0.61) benign(0.002) TCGA-HU-A4GQ-01 4 42545946 42545946 G A ATP8A1 Silent p.Y570Y 0.29 TCGA-HU-A4GQ-01 4 44690074 44690074 A G GUF1 Missense_Mutation p.E330G 0.04 deleterious(0.02) probably_damaging(0.914) TCGA-HU-A4GQ-01 4 47746581 47746581 T C CORIN Missense_Mutation p.R213G 0.36 deleterious(0.01) possibly_damaging(0.643) TCGA-HU-A4GQ-01 4 54424041 54424041 A C LNX1 Intron 0.12 TCGA-HU-A4GQ-01 4 55971024 55971024 C T KDR Silent p.L591L 0.17 TCGA-HU-A4GQ-01 4 56724584 56724584 A G EXOC1 Missense_Mutation p.K32R 0.29 tolerated(0.06) benign(0.216) TCGA-HU-A4GQ-01 4 6107609 6107609 A G JAKMIP1 Missense_Mutation p.L72P 0.28 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GQ-01 4 62910182 62910182 T C LPHN3 Silent p.R1175R 0.56 TCGA-HU-A4GQ-01 4 6292940 6292940 C T WFS1 Silent p.N159N 0.24 TCGA-HU-A4GQ-01 4 68384936 68384936 T - CENPC Frame_Shift_Del p.R206Gfs*2 0.25 TCGA-HU-A4GQ-01 4 6864456 6864456 A - KIAA0232 Frame_Shift_Del p.T785Hfs*4 0.23 TCGA-HU-A4GQ-01 4 68688179 68688179 C T TMPRSS11D Missense_Mutation p.R378Q 0.24 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GQ-01 4 6882514 6882514 G A KIAA0232 Missense_Mutation p.V1337M 0.26 deleterious_low_confidence(0) probably_damaging(0.957) TCGA-HU-A4GQ-01 4 70513145 70513145 A G UGT2A1 Missense_Mutation p.I73T 0.32 tolerated(0.13) benign(0.034) TCGA-HU-A4GQ-01 4 74027008 74027008 C T ANKRD17 Missense_Mutation p.R202Q 0.31 benign(0.098) TCGA-HU-A4GQ-01 4 76912030 76912030 A - SDAD1 5'UTR 0.28 TCGA-HU-A4GQ-01 4 8218845 8218845 G A SH3TC1 Missense_Mutation p.E264K 0.24 tolerated(0.53) benign(0.01) TCGA-HU-A4GQ-01 4 8242678 8242678 G A SH3TC1 Missense_Mutation p.R1336H 0.29 deleterious_low_confidence(0) benign(0.001) TCGA-HU-A4GQ-01 4 83276455 83276455 A G HNRNPD Splice_Site 0.36 TCGA-HU-A4GQ-01 4 8396369 8396369 G A ACOX3 Missense_Mutation p.S386L 0.29 tolerated(0.33) benign(0.009) TCGA-HU-A4GQ-01 4 8398742 8398742 A G ACOX3 Silent p.A326A 0.29 TCGA-HU-A4GQ-01 4 85678171 85678171 C T WDFY3 Missense_Mutation p.A1778T 0.21 deleterious(0.03) benign(0.03) TCGA-HU-A4GQ-01 4 8582941 8582941 G A GPR78 Missense_Mutation p.A78T 0.27 tolerated(0.12) benign(0.015) TCGA-HU-A4GQ-01 4 871440 871440 G A GAK Missense_Mutation p.R607C 0.34 tolerated(0.06) probably_damaging(0.998) TCGA-HU-A4GQ-01 4 87968675 87968676 - A AFF1 Frame_Shift_Ins p.T332Nfs*22 0.20 TCGA-HU-A4GQ-01 4 88583826 88583826 G A DMP1 Missense_Mutation p.S299N 0.23 tolerated(0.12) possibly_damaging(0.677) TCGA-HU-A4GQ-01 4 88989084 88989084 G A PKD2 Missense_Mutation p.R798H 0.29 deleterious(0.01) benign(0.058) TCGA-HU-A4GQ-01 4 89314657 89314657 C T HERC6 Missense_Mutation p.L228F 0.17 tolerated(0.7) benign(0.02) TCGA-HU-A4GQ-01 4 89408222 89408222 C T HERC5 Silent p.D618D 0.19 TCGA-HU-A4GQ-01 4 89574214 89574214 G A HERC3 Missense_Mutation p.G220R 0.24 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 4 997815 997815 C T IDUA Silent p.Y581Y 0.24 TCGA-HU-A4GQ-01 5 101834640 101834640 C T SLCO6A1 5'UTR 0.23 TCGA-HU-A4GQ-01 5 101834662 101834662 A G SLCO6A1 5'UTR 0.43 TCGA-HU-A4GQ-01 5 108290522 108290522 A - FER Frame_Shift_Del p.K476Nfs*53 0.24 TCGA-HU-A4GQ-01 5 108294935 108294935 C T FER Nonsense_Mutation p.R515* 0.28 TCGA-HU-A4GQ-01 5 112174360 112174360 A G APC Silent p.T1023T 0.19 TCGA-HU-A4GQ-01 5 112227602 112227602 A G ZRSR1 Missense_Mutation p.E89G 0.29 deleterious(0.01) benign(0.403) TCGA-HU-A4GQ-01 5 112328440 112328440 A C DCP2 Missense_Mutation p.E135D 0.26 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GQ-01 5 112349229 112349229 T A DCP2 3'UTR 0.33 TCGA-HU-A4GQ-01 5 112769448 112769448 C A TSSK1B Missense_Mutation p.E363D 0.15 tolerated_low_confidence(0.17) benign(0.001) TCGA-HU-A4GQ-01 5 115628184 115628184 T C COMMD10 Nonstop_Mutation p.*203Rext*19 0.31 TCGA-HU-A4GQ-01 5 118485859 118485859 T - DMXL1 Frame_Shift_Del p.Q1448Rfs*5 0.28 TCGA-HU-A4GQ-01 5 120022416 120022416 A - PRR16 3'UTR 0.13 TCGA-HU-A4GQ-01 5 121297697 121297697 G T SRFBP1 5'UTR 0.17 TCGA-HU-A4GQ-01 5 122911537 122911537 G T CSNK1G3 Missense_Mutation p.D185Y 0.36 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 5 122926143 122926144 - T CSNK1G3 Frame_Shift_Ins p.E297* 0.26 TCGA-HU-A4GQ-01 5 126758366 126758366 G A MEGF10 Missense_Mutation p.G532D 0.22 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 5 131545995 131545995 G A P4HA2 Missense_Mutation p.R231C 0.32 deleterious(0) probably_damaging(0.97) TCGA-HU-A4GQ-01 5 133473785 133473786 - CT TCF7 Frame_Shift_Ins p.Y163Sfs*37 0.27 TCGA-HU-A4GQ-01 5 133634344 133634344 A G CDKL3 Nonstop_Mutation p.*593Qext*23 0.23 TCGA-HU-A4GQ-01 5 134670787 134670787 G A H2AFY Missense_Mutation p.A333V 0.28 deleterious(0) probably_damaging(0.923) TCGA-HU-A4GQ-01 5 134782042 134782042 G A TIFAB 3'UTR 0.21 TCGA-HU-A4GQ-01 5 137426826 137426829 AGAG - WNT8A 3'UTR 0.21 TCGA-HU-A4GQ-01 5 137496755 137496755 G T BRD8 Missense_Mutation p.P751H 0.19 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GQ-01 5 137627690 137627690 T - CDC25C Frame_Shift_Del p.K244Sfs*15 0.24 TCGA-HU-A4GQ-01 5 137681158 137681158 C T FAM53C Nonsense_Mutation p.R261* 0.29 TCGA-HU-A4GQ-01 5 137756625 137756625 C - KDM3B Frame_Shift_Del p.P1317Rfs*10 0.22 TCGA-HU-A4GQ-01 5 137803449 137803450 CT - EGR1 Frame_Shift_Del p.S440Ffs*101 0.22 TCGA-HU-A4GQ-01 5 138658363 138658364 GA - MATR3 Frame_Shift_Del p.S620Ffs*5 0.24 TCGA-HU-A4GQ-01 5 138658374 138658374 C T MATR3 Silent p.T622T 0.22 TCGA-HU-A4GQ-01 5 138762025 138762025 A G DNAJC18 Missense_Mutation p.V132A 0.16 deleterious(0) possibly_damaging(0.833) TCGA-HU-A4GQ-01 5 138860445 138860445 T C TMEM173 Silent p.K150K 0.22 TCGA-HU-A4GQ-01 5 139741710 139741710 C T SLC4A9 Missense_Mutation p.R248W 0.25 tolerated(0.07) benign(0.12) TCGA-HU-A4GQ-01 5 139930279 139930279 C T SRA1 3'UTR 0.22 TCGA-HU-A4GQ-01 5 140058700 140058700 G A HARS Missense_Mutation p.R137W 0.36 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GQ-01 5 140166004 140166004 C A PCDHA1 Silent p.T43T 0.05 TCGA-HU-A4GQ-01 5 140166589 140166589 C T PCDHA1 Silent p.N238N 0.24 TCGA-HU-A4GQ-01 5 140176740 140176741 GC - PCDHA2 Frame_Shift_Del p.P734Rfs*41 0.19 TCGA-HU-A4GQ-01 5 140176838 140176838 C - PCDHA2 Frame_Shift_Del p.K766Rfs*29 0.25 TCGA-HU-A4GQ-01 5 140188218 140188218 G A PCDHA4 Silent p.A482A 0.27 TCGA-HU-A4GQ-01 5 140263149 140263149 G A PCDHA13 Silent p.S432S 0.24 TCGA-HU-A4GQ-01 5 140263395 140263395 C T PCDHA13 Silent p.S514S 0.23 TCGA-HU-A4GQ-01 5 140346986 140346986 G A PCDHAC2 Missense_Mutation p.R212H 0.19 deleterious(0.01) possibly_damaging(0.871) TCGA-HU-A4GQ-01 5 140475056 140475056 G A PCDHB2 Missense_Mutation p.A228T 0.28 tolerated_low_confidence(0.51) benign(0.173) TCGA-HU-A4GQ-01 5 140481796 140481796 C T PCDHB3 Silent p.Y521Y 0.19 TCGA-HU-A4GQ-01 5 140530600 140530600 C - PCDHB6 Frame_Shift_Del p.L256Sfs*13 0.22 TCGA-HU-A4GQ-01 5 140531689 140531689 G A PCDHB6 Silent p.A617A 0.26 TCGA-HU-A4GQ-01 5 140589778 140589778 C T PCDHB12 Silent p.T433T 0.29 TCGA-HU-A4GQ-01 5 140626740 140626740 G T PCDHB15 Missense_Mutation p.G532C 0.29 deleterious_low_confidence(0) possibly_damaging(0.473) TCGA-HU-A4GQ-01 5 140627513 140627513 T C PCDHB15 3'UTR 0.30 TCGA-HU-A4GQ-01 5 140737119 140737119 T C PCDHGA4 Silent p.S784S 0.05 TCGA-HU-A4GQ-01 5 140744618 140744618 C A PCDHGA5 Missense_Mutation p.L241M 0.27 deleterious_low_confidence(0.03) benign(0.017) TCGA-HU-A4GQ-01 5 140753786 140753786 G T PCDHGA6 Missense_Mutation p.G46C 0.18 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-HU-A4GQ-01 5 140769313 140769313 C T PCDHGB4 Missense_Mutation p.T621M 0.31 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GQ-01 5 140769490 140769490 C A PCDHGB4 Missense_Mutation p.S680Y 0.25 deleterious(0.01) possibly_damaging(0.671) TCGA-HU-A4GQ-01 5 140790006 140790006 G T PCDHGB6 Missense_Mutation p.G746V 0.28 deleterious(0.01) probably_damaging(0.98) TCGA-HU-A4GQ-01 5 140812120 140812120 C T PCDHGA12 Silent p.S598S 0.27 TCGA-HU-A4GQ-01 5 141244531 141244533 CTT - PCDH1 In_Frame_Del p.K455del 0.24 TCGA-HU-A4GQ-01 5 141248291 141248291 G A PCDH1 Missense_Mutation p.T249I 0.30 tolerated(0.09) possibly_damaging(0.886) TCGA-HU-A4GQ-01 5 14488310 14488310 C T TRIO Missense_Mutation p.R2525C 0.41 possibly_damaging(0.689) TCGA-HU-A4GQ-01 5 145664219 145664219 G A RBM27 Missense_Mutation p.R1008Q 0.27 tolerated(0.57) benign(0.439) TCGA-HU-A4GQ-01 5 145719823 145719823 G A POU4F3 Missense_Mutation p.R278H 0.18 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 5 146778699 146778699 G A DPYSL3 Silent p.L523L 0.26 TCGA-HU-A4GQ-01 5 146781173 146781173 C T DPYSL3 Missense_Mutation p.A414T 0.28 deleterious(0.01) possibly_damaging(0.768) TCGA-HU-A4GQ-01 5 14746035 14746035 G A ANKH Missense_Mutation p.H287Y 0.26 deleterious(0) probably_damaging(0.921) TCGA-HU-A4GQ-01 5 149212959 149212959 G A PPARGC1B Silent p.E441E 0.30 TCGA-HU-A4GQ-01 5 149584484 149584484 G A SLC6A7 Silent p.T509T 0.32 TCGA-HU-A4GQ-01 5 149914560 149914560 G A NDST1 Missense_Mutation p.A410T 0.30 tolerated(0.58) benign(0.001) TCGA-HU-A4GQ-01 5 151170537 151170537 G T G3BP1 Missense_Mutation p.G89C 0.28 deleterious(0) probably_damaging(0.993) TCGA-HU-A4GQ-01 5 156810312 156810312 C T CYFIP2 Missense_Mutation p.A1025V 0.21 tolerated(0.23) benign(0.142) TCGA-HU-A4GQ-01 5 157065461 157065461 C T SOX30 Missense_Mutation p.A553T 0.23 tolerated(0.65) benign(0.026) TCGA-HU-A4GQ-01 5 159680492 159680492 T C CCNJL Missense_Mutation p.M401V 0.29 tolerated(0.46) benign(0.011) TCGA-HU-A4GQ-01 5 159855661 159855661 A G PTTG1 Silent p.P194P 0.31 TCGA-HU-A4GQ-01 5 168244359 168244359 G A SLIT3 Missense_Mutation p.H247Y 0.11 tolerated(0.14) benign(0.417) TCGA-HU-A4GQ-01 5 169524 169524 C T PLEKHG4B Silent p.Y826Y 0.28 TCGA-HU-A4GQ-01 5 171517367 171517367 C A STK10 Splice_Site p.X519_splice 0.33 TCGA-HU-A4GQ-01 5 171766472 171766472 G A SH3PXD2B Missense_Mutation p.T546M 0.22 tolerated(0.46) benign(0.001) TCGA-HU-A4GQ-01 5 172662122 172662122 G A NKX2-5 5'UTR 0.13 TCGA-HU-A4GQ-01 5 176022601 176022601 G A CDHR2 Silent p.R1287R 0.27 TCGA-HU-A4GQ-01 5 176026777 176026777 G - GPRIN1 Frame_Shift_Del p.P20Qfs*23 0.13 TCGA-HU-A4GQ-01 5 176827262 176827262 C T PFN3 Missense_Mutation p.A106T 0.25 tolerated(0.41) possibly_damaging(0.549) TCGA-HU-A4GQ-01 5 176935492 176935492 C T DOK3 Missense_Mutation p.V96M 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-HU-A4GQ-01 5 176951430 176951430 G A FAM193B Silent p.G684G 0.27 TCGA-HU-A4GQ-01 5 177546827 177546827 C T N4BP3 Silent p.A81A 0.23 TCGA-HU-A4GQ-01 5 177697345 177697345 C T COL23A1 Missense_Mutation p.G154D 0.24 deleterious(0) unknown(0) TCGA-HU-A4GQ-01 5 178358352 178358352 A - ZFP2 Frame_Shift_Del p.T14Pfs*8 0.26 TCGA-HU-A4GQ-01 5 178358745 178358745 C A ZFP2 Missense_Mutation p.S144Y 0.27 tolerated(0.15) possibly_damaging(0.87) TCGA-HU-A4GQ-01 5 178392092 178392092 G A ZNF454 Silent p.T229T 0.17 TCGA-HU-A4GQ-01 5 179250884 179250884 C T SQSTM1 Missense_Mutation p.R110C 0.23 deleterious(0) probably_damaging(0.915) TCGA-HU-A4GQ-01 5 179668088 179668088 G A MAPK9 Silent p.D313D 0.24 TCGA-HU-A4GQ-01 5 179728428 179728428 C T GFPT2 3'UTR 0.28 TCGA-HU-A4GQ-01 5 179992874 179992874 A G CNOT6 Missense_Mutation p.Q205R 0.16 tolerated(0.15) benign(0.439) TCGA-HU-A4GQ-01 5 180486694 180486694 C T BTNL9 Silent p.G480G 0.27 TCGA-HU-A4GQ-01 5 1878803 1878803 G A IRX4 Silent p.H280H 0.42 TCGA-HU-A4GQ-01 5 19612580 19612580 T A CDH18 Missense_Mutation p.L258F 0.31 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 5 19747115 19747115 A G CDH18 Silent p.N153N 0.26 TCGA-HU-A4GQ-01 5 23526448 23526448 A G PRDM9 Silent p.P417P 0.27 TCGA-HU-A4GQ-01 5 240501 240501 C T SDHA Silent p.N487N 0.28 TCGA-HU-A4GQ-01 5 33549372 33549373 - G ADAMTS12 Frame_Shift_Ins p.L1415Ifs*6 0.19 TCGA-HU-A4GQ-01 5 33938198 33938198 C T RXFP3 Silent p.G451G 0.24 TCGA-HU-A4GQ-01 5 35991393 35991393 C T UGT3A1 5'UTR 0.26 TCGA-HU-A4GQ-01 5 37108532 37108533 - T C5orf42 Frame_Shift_Ins p.H3094Tfs*18 0.31 TCGA-HU-A4GQ-01 5 38406315 38406315 A G EGFLAM Missense_Mutation p.D267G 0.26 deleterious_low_confidence(0.03) possibly_damaging(0.611) TCGA-HU-A4GQ-01 5 38975690 38975690 G A RICTOR Nonsense_Mutation p.R280* 0.26 TCGA-HU-A4GQ-01 5 41004501 41004501 C T MROH2B Missense_Mutation p.V1381M 0.29 deleterious(0) probably_damaging(0.939) TCGA-HU-A4GQ-01 5 41904537 41904537 T C C5orf51 Missense_Mutation p.I23T 0.33 tolerated_low_confidence(0.08) possibly_damaging(0.496) TCGA-HU-A4GQ-01 5 42801011 42801011 C T SEPP1 Silent p.Q319Q 0.25 TCGA-HU-A4GQ-01 5 43161931 43161931 A G ZNF131 Missense_Mutation p.S284G 0.31 deleterious(0.01) benign(0.003) TCGA-HU-A4GQ-01 5 43245938 43245938 C T NIM1K Missense_Mutation p.R21W 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.507) TCGA-HU-A4GQ-01 5 434622 434622 C T AHRR Silent p.H611H 0.16 TCGA-HU-A4GQ-01 5 52954391 52954391 T G NDUFS4 Missense_Mutation p.L121V 0.32 deleterious(0.01) possibly_damaging(0.859) TCGA-HU-A4GQ-01 5 54701406 54701415 GAGATAAGCA - SKIV2L2 Frame_Shift_Del p.E879Vfs*7 0.23 TCGA-HU-A4GQ-01 5 54737726 54737728 AGA - PPAP2A In_Frame_Del p.F168del 0.21 TCGA-HU-A4GQ-01 5 63256825 63256825 C T HTR1A Missense_Mutation p.R241H 0.23 tolerated(0.12) benign(0.003) TCGA-HU-A4GQ-01 5 65118659 65118659 C T NLN Silent p.D677D 0.27 TCGA-HU-A4GQ-01 5 65344494 65344494 G A ERBB2IP Splice_Site p.X597_splice 0.29 TCGA-HU-A4GQ-01 5 66459182 66459182 C T MAST4 Missense_Mutation p.P1392L 0.31 probably_damaging(0.992) TCGA-HU-A4GQ-01 5 68715240 68715240 C T MARVELD2 Missense_Mutation p.R10W 0.27 deleterious_low_confidence(0.03) unknown(0) TCGA-HU-A4GQ-01 5 68716108 68716108 C T MARVELD2 Missense_Mutation p.A299V 0.17 tolerated(0.46) benign(0.21) TCGA-HU-A4GQ-01 5 68728392 68728392 A G MARVELD2 Silent p.S407S 0.29 TCGA-HU-A4GQ-01 5 70782336 70782336 T - BDP1 Frame_Shift_Del p.F367Lfs*25 0.22 TCGA-HU-A4GQ-01 5 78936673 78936673 G A PAPD4 Splice_Site p.X156_splice 0.37 TCGA-HU-A4GQ-01 5 79030432 79030432 G A CMYA5 Silent p.P1948P 0.28 TCGA-HU-A4GQ-01 5 86672789 86672807 TTTTTCTTCACGAAAAGCT - RASA1 Frame_Shift_Del p.I759Mfs*9 0.16 TCGA-HU-A4GQ-01 5 93077153 93077153 C T POU5F2 Silent p.A39A 0.23 TCGA-HU-A4GQ-01 5 96112147 96112148 - A ERAP1 Frame_Shift_Ins p.D927* 0.25 TCGA-HU-A4GQ-01 5 98193931 98193931 A G CHD1 Silent p.S1580S 0.23 TCGA-HU-A4GQ-01 6 101037562 101037562 T A ASCC3 Missense_Mutation p.K1833M 0.21 tolerated(0.1) possibly_damaging(0.838) TCGA-HU-A4GQ-01 6 102337740 102337740 T C GRIK2 Splice_Site p.X583_splice 0.21 TCGA-HU-A4GQ-01 6 10796328 10796328 G A MAK Missense_Mutation p.P349L 0.28 tolerated(0.59) benign(0.001) TCGA-HU-A4GQ-01 6 109850222 109850222 T - AK9 Frame_Shift_Del p.R1209Gfs*39 0.33 TCGA-HU-A4GQ-01 6 111694477 111694477 T G REV3L Missense_Mutation p.N1694T 0.16 tolerated_low_confidence(0.6) benign(0.001) TCGA-HU-A4GQ-01 6 116758546 116758546 C T DSE 3'UTR 0.14 TCGA-HU-A4GQ-01 6 117923401 117923401 G A GOPC Silent p.G17G 0.20 TCGA-HU-A4GQ-01 6 118786459 118786459 A - CEP85L 3'UTR 0.32 TCGA-HU-A4GQ-01 6 123116911 123116911 G A SMPDL3A Missense_Mutation p.A68T 0.26 tolerated(0.6) benign(0.042) TCGA-HU-A4GQ-01 6 125233444 125233444 A T RP11-510H23.1 RNA 0.27 TCGA-HU-A4GQ-01 6 127608556 127608558 AGA - RNF146 In_Frame_Del p.E268del 0.29 TCGA-HU-A4GQ-01 6 127796902 127796902 C T SOGA3 Missense_Mutation p.A757T 0.27 tolerated(0.14) benign(0.126) TCGA-HU-A4GQ-01 6 127837665 127837665 C T SOGA3 Missense_Mutation p.S32N 0.29 deleterious_low_confidence(0) benign(0) TCGA-HU-A4GQ-01 6 130454617 130454617 G A L3MBTL3 Missense_Mutation p.V663I 0.26 tolerated(0.3) benign(0) TCGA-HU-A4GQ-01 6 13230374 13230374 C T PHACTR1 Missense_Mutation p.T447M 0.43 deleterious(0.01) probably_damaging(0.968) TCGA-HU-A4GQ-01 6 132891738 132891738 C T TAAR6 Missense_Mutation p.T93M 0.29 deleterious(0) benign(0.298) TCGA-HU-A4GQ-01 6 13601128 13601128 C T SIRT5 Silent p.G268G 0.37 TCGA-HU-A4GQ-01 6 138201287 138201287 C T TNFAIP3 Silent p.C662C 0.19 TCGA-HU-A4GQ-01 6 139159645 139159645 T C ECT2L Silent p.T112T 0.29 TCGA-HU-A4GQ-01 6 139583894 139583894 C T TXLNB Missense_Mutation p.R235Q 0.22 tolerated(0.12) probably_damaging(0.982) TCGA-HU-A4GQ-01 6 139609852 139609852 T C TXLNB Missense_Mutation p.Q62R 0.32 tolerated(0.07) possibly_damaging(0.742) TCGA-HU-A4GQ-01 6 142725056 142725056 T C GPR126 Silent p.N691N 0.32 TCGA-HU-A4GQ-01 6 146121270 146121270 A G FBXO30 Missense_Mutation p.L737P 0.24 deleterious(0) probably_damaging(0.997) TCGA-HU-A4GQ-01 6 146266724 146266724 T - SHPRH Frame_Shift_Del p.G458Efs*26 0.19 TCGA-HU-A4GQ-01 6 149285725 149285725 G A UST Intron 0.26 TCGA-HU-A4GQ-01 6 151672372 151672372 C T AKAP12 Missense_Mutation p.T949M 0.29 tolerated(0.14) benign(0.006) TCGA-HU-A4GQ-01 6 151672999 151673000 - C AKAP12 Frame_Shift_Ins p.D1161* 0.33 TCGA-HU-A4GQ-01 6 151766691 151766691 C T RMND1 Missense_Mutation p.A86T 0.26 tolerated_low_confidence(0.56) benign(0.004) TCGA-HU-A4GQ-01 6 152473123 152473123 G A SYNE1 Missense_Mutation p.R8095C 0.22 probably_damaging(0.994) TCGA-HU-A4GQ-01 6 152841622 152841622 G A SYNE1 Missense_Mutation p.T94M 0.23 possibly_damaging(0.893) TCGA-HU-A4GQ-01 6 15496805 15496805 C T JARID2 Missense_Mutation p.A450V 0.29 tolerated_low_confidence(0.64) benign(0.002) TCGA-HU-A4GQ-01 6 155465747 155465747 G A TIAM2 Silent p.T546T 0.22 TCGA-HU-A4GQ-01 6 160494501 160494501 G A IGF2R Silent p.A1649A 0.30 TCGA-HU-A4GQ-01 6 160968821 160968822 - T LPA Frame_Shift_Ins p.N1768Kfs*5 0.28 TCGA-HU-A4GQ-01 6 161469776 161469776 A - MAP3K4 Frame_Shift_Del p.N160Mfs*8 0.28 TCGA-HU-A4GQ-01 6 166883342 166883342 G A RPS6KA2 Missense_Mutation p.T328I 0.30 deleterious(0.04) benign(0.173) TCGA-HU-A4GQ-01 6 167592007 167592007 C T TCP10L2 Missense_Mutation p.R212W 0.23 tolerated(0.13) benign(0.005) TCGA-HU-A4GQ-01 6 169629757 169629757 C T THBS2 Silent p.L723L 0.27 TCGA-HU-A4GQ-01 6 1726673 1726673 T A GMDS Nonsense_Mutation p.K322* 0.32 TCGA-HU-A4GQ-01 6 17796972 17796972 C T KIF13A Missense_Mutation p.R957Q 0.39 deleterious(0.04) probably_damaging(0.997) TCGA-HU-A4GQ-01 6 20481645 20481645 C T E2F3 Silent p.N238N 0.32 TCGA-HU-A4GQ-01 6 24503611 24503611 C T ALDH5A1 Missense_Mutation p.R187W 0.18 deleterious(0) probably_damaging(0.992) TCGA-HU-A4GQ-01 6 24528266 24528266 C T ALDH5A1 Silent p.T418T 0.27 TCGA-HU-A4GQ-01 6 24706480 24706480 T - C6orf62 Frame_Shift_Del p.N192Tfs*28 0.29 TCGA-HU-A4GQ-01 6 25799104 25799104 G A SLC17A1 Missense_Mutation p.A438V 0.26 tolerated(0.1) benign(0.015) TCGA-HU-A4GQ-01 6 26027196 26027196 T C HIST1H4B Silent p.G95G 0.25 TCGA-HU-A4GQ-01 6 27925084 27925084 G A OR2B6 Nonsense_Mutation p.W22* 0.25 TCGA-HU-A4GQ-01 6 28227708 28227708 A - NKAPL Frame_Shift_Del p.R189Efs*89 0.21 TCGA-HU-A4GQ-01 6 28228000 28228000 T C NKAPL Missense_Mutation p.I284T 0.26 tolerated(0.06) benign(0.053) TCGA-HU-A4GQ-01 6 28962826 28962826 T C ZNF311 Silent p.P651P 0.28 TCGA-HU-A4GQ-01 6 29638115 29638115 T C MOG Missense_Mutation p.V217A 0.31 tolerated(0.31) benign(0.39) TCGA-HU-A4GQ-01 6 30080390 30080390 T G TRIM31 Missense_Mutation p.I65L 0.25 tolerated(0.51) benign(0.001) TCGA-HU-A4GQ-01 6 30458189 30458189 T C HLA-E Silent p.N169N 0.29 TCGA-HU-A4GQ-01 6 30593484 30593484 C T MRPS18B Silent p.G229G 0.24 TCGA-HU-A4GQ-01 6 31130391 31130391 G A TCF19 Missense_Mutation p.G312D 0.22 tolerated(0.66) probably_damaging(0.989) TCGA-HU-A4GQ-01 6 31323308 31323308 G T HLA-B Nonsense_Mutation p.C227* 0.22 TCGA-HU-A4GQ-01 6 31630143 31630143 G - GPANK1 Frame_Shift_Del p.P324Lfs*6 0.24 TCGA-HU-A4GQ-01 6 31734281 31734281 C T VWA7 Missense_Mutation p.A715T 0.29 tolerated(0.28) benign(0.005) TCGA-HU-A4GQ-01 6 31833553 31833553 G T SLC44A4 Missense_Mutation p.T499N 0.27 deleterious(0) probably_damaging(0.953) TCGA-HU-A4GQ-01 6 31856834 31856834 C A EHMT2 Silent p.V376V 0.29 TCGA-HU-A4GQ-01 6 31926206 31926206 G - NELFE Frame_Shift_Del p.G7Dfs*2 0.23 TCGA-HU-A4GQ-01 6 31962394 31962394 G A C4A Silent p.T904T 0.08 TCGA-HU-A4GQ-01 6 32007917 32007917 G A CYP21A2 Missense_Mutation p.G292S 0.26 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GQ-01 6 32010293 32010293 C - TNXB Frame_Shift_Del p.G479Afs*7 0.26 TCGA-HU-A4GQ-01 6 32137210 32137210 C T AGPAT1 Missense_Mutation p.R232Q 0.28 tolerated(1) benign(0.011) TCGA-HU-A4GQ-01 6 32166736 32166736 C T NOTCH4 Missense_Mutation p.R1501Q 0.29 deleterious(0) probably_damaging(0.996) TCGA-HU-A4GQ-01 6 32187952 32187952 G A NOTCH4 Silent p.G423G 0.23 TCGA-HU-A4GQ-01 6 33043844 33043844 C - HLA-DPB1 Frame_Shift_Del p.R11Gfs*5 0.38 TCGA-HU-A4GQ-01 6 33638469 33638469 G A ITPR3 Silent p.A821A 0.25 TCGA-HU-A4GQ-01 6 34957009 34957009 T C ANKS1A Silent p.R406R 0.31 TCGA-HU-A4GQ-01 6 35056426 35056427 - G ANKS1A 3'UTR 0.20 TCGA-HU-A4GQ-01 6 35480431 35480431 C T TULP1 Silent p.P28P 0.25 TCGA-HU-A4GQ-01 6 35919044 35919044 C T SLC26A8 Missense_Mutation p.D790N 0.08 deleterious(0.02) probably_damaging(0.991) TCGA-HU-A4GQ-01 6 36842595 36842595 C T PPIL1 5'UTR 0.41 TCGA-HU-A4GQ-01 6 37252164 37252164 G A TBC1D22B Missense_Mutation p.R242Q 0.21 tolerated(0.31) possibly_damaging(0.66) TCGA-HU-A4GQ-01 6 37623589 37623589 G A MDGA1 Missense_Mutation p.R156C 0.12 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GQ-01 6 39846031 39846031 C T DAAM2 Missense_Mutation p.R452W 0.23 deleterious(0) probably_damaging(0.965) TCGA-HU-A4GQ-01 6 40399676 40399677 - G LRFN2 Frame_Shift_Ins p.K393Qfs*38 0.25 TCGA-HU-A4GQ-01 6 41606486 41606486 C T MDFI 5'UTR 0.33 TCGA-HU-A4GQ-01 6 42162429 42162429 G A GUCA1B Missense_Mutation p.R44C 0.09 deleterious(0) benign(0.06) TCGA-HU-A4GQ-01 6 42196140 42196140 G A TRERF1 Silent p.T1182T 0.26 TCGA-HU-A4GQ-01 6 42643810 42643810 C T UBR2 Missense_Mutation p.A1423V 0.23 deleterious(0.01) benign(0.025) TCGA-HU-A4GQ-01 6 42832627 42832627 A - GLTSCR1L Frame_Shift_Del p.T897Qfs*8 0.20 TCGA-HU-A4GQ-01 6 43013345 43013345 G A CUL7 Missense_Mutation p.R1032C 0.22 deleterious(0) possibly_damaging(0.688) TCGA-HU-A4GQ-01 6 43039923 43039923 T C KLC4 Missense_Mutation p.L491P 0.23 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 6 43227329 43227330 - C TTBK1 Frame_Shift_Ins p.D440Rfs*19 0.29 TCGA-HU-A4GQ-01 6 43323104 43323104 G A ZNF318 Silent p.R656R 0.26 TCGA-HU-A4GQ-01 6 43483391 43483391 C T YIPF3 Missense_Mutation p.A113T 0.20 deleterious(0.01) possibly_damaging(0.732) TCGA-HU-A4GQ-01 6 44248064 44248064 G A TCTE1 Missense_Mutation p.R454C 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-HU-A4GQ-01 6 50681809 50681809 T A TFAP2D Splice_Site p.X13_splice 0.19 TCGA-HU-A4GQ-01 6 51882334 51882334 A G PKHD1 Missense_Mutation p.M1825T 0.28 deleterious(0.04) benign(0.019) TCGA-HU-A4GQ-01 6 52318984 52318984 C T EFHC1 Missense_Mutation p.T272M 0.28 deleterious(0) probably_damaging(0.995) TCGA-HU-A4GQ-01 6 52357070 52357070 A G EFHC1 Silent p.L618L 0.19 TCGA-HU-A4GQ-01 6 56328464 56328464 G A DST Missense_Mutation p.R4973W 0.15 probably_damaging(1) TCGA-HU-A4GQ-01 6 7585816 7585816 T C DSP Missense_Mutation p.L2774P 0.25 probably_damaging(0.999) TCGA-HU-A4GQ-01 6 76660338 76660338 C T IMPG1 Missense_Mutation p.D589N 0.34 tolerated(0.12) benign(0.088) TCGA-HU-A4GQ-01 6 79944244 79944244 T - HMGN3 Intron 0.26 TCGA-HU-A4GQ-01 6 80629257 80629257 A - ELOVL4 Frame_Shift_Del p.F183Lfs*5 0.25 TCGA-HU-A4GQ-01 6 80656996 80656996 T A ELOVL4 Translation_Start_Site p.M1? 0.27 tolerated_low_confidence(0.18) benign(0.036) TCGA-HU-A4GQ-01 6 82930339 82930339 T - IBTK Frame_Shift_Del p.I406Ffs*22 0.25 TCGA-HU-A4GQ-01 6 83849800 83849800 T A DOPEY1 Nonsense_Mutation p.C1734* 0.21 TCGA-HU-A4GQ-01 6 84563821 84563821 C T RIPPLY2 Silent p.P60P 0.27 TCGA-HU-A4GQ-01 6 88767395 88767395 C T SPACA1 Missense_Mutation p.R111W 0.23 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 6 90359802 90359802 A G MDN1 Missense_Mutation p.Y5383H 0.25 unknown(0) TCGA-HU-A4GQ-01 6 90359803 90359803 C T MDN1 Silent p.Q5382Q 0.25 TCGA-HU-A4GQ-01 6 90660298 90660298 G A BACH2 Silent p.R509R 0.22 TCGA-HU-A4GQ-01 6 91226170 91226170 A - MAP3K7 3'UTR 0.47 TCGA-HU-A4GQ-01 6 96972270 96972270 T C UFL1 Missense_Mutation p.I79T 0.30 deleterious(0.01) possibly_damaging(0.719) TCGA-HU-A4GQ-01 6 97597752 97597752 G A MMS22L Silent p.G1209G 0.21 TCGA-HU-A4GQ-01 7 100334234 100334234 G - ZAN Frame_Shift_Del p.Y81Tfs*96 0.24 TCGA-HU-A4GQ-01 7 100491206 100491208 CTC - ACHE In_Frame_Del p.E216del 0.17 TCGA-HU-A4GQ-01 7 100549649 100549649 C T MUC3A Missense_Mutation p.T77I 0.07 deleterious(0.03) unknown(0) TCGA-HU-A4GQ-01 7 100679802 100679802 T C MUC17 Missense_Mutation p.V1702A 0.32 possibly_damaging(0.615) TCGA-HU-A4GQ-01 7 100855554 100855554 G A PLOD3 Silent p.G369G 0.46 TCGA-HU-A4GQ-01 7 100859469 100859469 C T PLOD3 Silent p.T159T 0.13 TCGA-HU-A4GQ-01 7 101187338 101187338 C T COL26A1 Nonsense_Mutation p.R222* 0.57 TCGA-HU-A4GQ-01 7 103234873 103234873 G A RELN Silent p.P1202P 0.41 TCGA-HU-A4GQ-01 7 103322570 103322570 G A RELN Missense_Mutation p.P428S 0.22 tolerated(0.13) probably_damaging(0.996) TCGA-HU-A4GQ-01 7 1037311 1037311 G - C7orf50 Frame_Shift_Del p.L179Cfs*136 0.15 TCGA-HU-A4GQ-01 7 104773248 104773248 G A SRPK2 Missense_Mutation p.T581M 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-HU-A4GQ-01 7 105148864 105148864 T - PUS7 Frame_Shift_Del p.K32Nfs*9 0.13 TCGA-HU-A4GQ-01 7 107302171 107302171 G A SLC26A4 Missense_Mutation p.E29K 0.32 tolerated(0.1) possibly_damaging(0.592) TCGA-HU-A4GQ-01 7 107418725 107418725 A C SLC26A3 Nonsense_Mutation p.L470* 0.38 TCGA-HU-A4GQ-01 7 107820828 107820828 C T NRCAM Missense_Mutation p.R897H 0.20 tolerated(0.23) possibly_damaging(0.485) TCGA-HU-A4GQ-01 7 11062500 11062500 T A PHF14 Missense_Mutation p.V404D 0.55 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GQ-01 7 111386418 111386418 G A DOCK4 Missense_Mutation p.A1541V 0.11 tolerated(0.17) benign(0.099) TCGA-HU-A4GQ-01 7 111629126 111629126 G A DOCK4 Silent p.H136H 0.30 TCGA-HU-A4GQ-01 7 1131765 1131765 C T GPER1 Missense_Mutation p.S134L 0.54 deleterious(0) possibly_damaging(0.871) TCGA-HU-A4GQ-01 7 117232305 117232305 A - CFTR Frame_Shift_Del p.R697Gfs*25 0.29 TCGA-HU-A4GQ-01 7 117282581 117282581 C T CFTR Silent p.I1269I 0.16 TCGA-HU-A4GQ-01 7 122194676 122194676 T - CADPS2 Frame_Shift_Del p.N468Ifs*7 0.33 TCGA-HU-A4GQ-01 7 124387030 124387030 A G GPR37 Missense_Mutation p.V464A 0.28 tolerated(0.13) benign(0.326) TCGA-HU-A4GQ-01 7 126173169 126173169 C T GRM8 Missense_Mutation p.S756N 0.15 tolerated(0.83) probably_damaging(0.998) TCGA-HU-A4GQ-01 7 128040160 128040160 C T IMPDH1 Missense_Mutation p.R288H 0.18 deleterious(0.01) benign(0.052) TCGA-HU-A4GQ-01 7 128845572 128845572 G A SMO Missense_Mutation p.R290H 0.23 deleterious(0) probably_damaging(0.968) TCGA-HU-A4GQ-01 7 129096460 129096460 C T STRIP2 Nonsense_Mutation p.R339* 0.15 TCGA-HU-A4GQ-01 7 130020324 130020324 G A CPA1 5'UTR 0.41 TCGA-HU-A4GQ-01 7 130023575 130023575 C A CPA1 Silent p.T212T 0.25 TCGA-HU-A4GQ-01 7 132470338 132470338 A - CHCHD3 3'UTR 0.55 TCGA-HU-A4GQ-01 7 134878329 134878329 C T WDR91 Splice_Site p.X497_splice 0.16 TCGA-HU-A4GQ-01 7 135310080 135310080 C T NUP205 Missense_Mutation p.L1550F 0.38 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GQ-01 7 136699678 136699678 A T CHRM2 Missense_Mutation p.E22D 0.37 deleterious(0.01) probably_damaging(0.979) TCGA-HU-A4GQ-01 7 137531226 137531226 C T DGKI Missense_Mutation p.R128Q 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.885) TCGA-HU-A4GQ-01 7 138145967 138145967 T G TRIM24 Intron 0.24 TCGA-HU-A4GQ-01 7 138239681 138239681 G A TRIM24 Silent p.G500G 0.20 TCGA-HU-A4GQ-01 7 138312134 138312134 G A SVOPL Missense_Mutation p.T381M 0.19 tolerated(0.09) possibly_damaging(0.523) TCGA-HU-A4GQ-01 7 138312137 138312137 C T SVOPL Missense_Mutation p.C380Y 0.38 deleterious(0.04) possibly_damaging(0.579) TCGA-HU-A4GQ-01 7 139726084 139726084 C T PARP12 Missense_Mutation p.G565S 0.31 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 7 139797360 139797360 G A KDM7A Silent p.P667P 0.24 TCGA-HU-A4GQ-01 7 141443388 141443388 G A SSBP1 Missense_Mutation p.R38Q 0.22 deleterious(0.05) possibly_damaging(0.484) TCGA-HU-A4GQ-01 7 142162022 142162022 C T TRBV6-6 Missense_Mutation p.V85I 0.19 deleterious(0.03) possibly_damaging(0.666) TCGA-HU-A4GQ-01 7 142231795 142231795 G A TRBV10-1 Missense_Mutation p.A41V 0.20 deleterious(0.03) benign(0.003) TCGA-HU-A4GQ-01 7 142750155 142750155 G A OR6V1 Missense_Mutation p.G240R 0.21 deleterious(0) probably_damaging(0.945) TCGA-HU-A4GQ-01 7 143929709 143929709 C T OR2A42 Silent p.T76T 0.36 TCGA-HU-A4GQ-01 7 1484422 1484422 G - MICALL2 Frame_Shift_Del p.G429Afs*68 0.11 TCGA-HU-A4GQ-01 7 148767797 148767797 C T ZNF786 Silent p.A689A 0.15 TCGA-HU-A4GQ-01 7 149152575 149152575 G A ZNF777 Missense_Mutation p.T180M 0.22 deleterious(0) probably_damaging(0.983) TCGA-HU-A4GQ-01 7 149522173 149522173 T C SSPO RNA 0.17 TCGA-HU-A4GQ-01 7 150164369 150164369 A G GIMAP8 Missense_Mutation p.T195A 0.16 tolerated(0.42) benign(0.021) TCGA-HU-A4GQ-01 7 150714250 150714250 G - ATG9B Frame_Shift_Del p.P721Qfs*61 0.29 TCGA-HU-A4GQ-01 7 150878203 150878203 G A ASB10 Silent p.V309V 0.19 TCGA-HU-A4GQ-01 7 150935382 150935383 - C CHPF2 Frame_Shift_Ins p.S648Lfs*6 0.23 TCGA-HU-A4GQ-01 7 1538480 1538480 C T INTS1 Silent p.R382R 0.12 TCGA-HU-A4GQ-01 7 154767562 154767562 A G PAXIP1 Silent p.P306P 0.14 TCGA-HU-A4GQ-01 7 154862882 154862882 G A HTR5A-AS1 Silent p.S44S 0.27 TCGA-HU-A4GQ-01 7 155504033 155504033 C A RBM33 Missense_Mutation p.P362H 0.12 deleterious(0.03) probably_damaging(0.95) TCGA-HU-A4GQ-01 7 157060539 157060539 C T UBE3C 3'UTR 0.56 TCGA-HU-A4GQ-01 7 158738439 158738439 C A WDR60 Missense_Mutation p.A1057D 0.31 deleterious(0) benign(0.016) TCGA-HU-A4GQ-01 7 23239157 23239157 G A NUPL2 Silent p.S230S 0.33 TCGA-HU-A4GQ-01 7 23339094 23339094 G A MALSU1 Silent p.R41R 0.15 TCGA-HU-A4GQ-01 7 24720064 24720064 G A MPP6 Silent p.A457A 0.23 TCGA-HU-A4GQ-01 7 27194754 27194754 G A HOXA7 Missense_Mutation p.T156M 0.18 deleterious(0.03) probably_damaging(0.988) TCGA-HU-A4GQ-01 7 2752035 2752035 G A AMZ1 Nonsense_Mutation p.W340* 0.18 TCGA-HU-A4GQ-01 7 2977652 2977654 CTT - CARD11 In_Frame_Del p.K344del 0.18 TCGA-HU-A4GQ-01 7 30094883 30094883 A G PLEKHA8 Missense_Mutation p.I322V 0.41 tolerated(0.09) possibly_damaging(0.656) TCGA-HU-A4GQ-01 7 31378410 31378410 A G NEUROD6 Missense_Mutation p.L158P 0.21 deleterious(0) probably_damaging(0.973) TCGA-HU-A4GQ-01 7 32909627 32909627 C A KBTBD2 Missense_Mutation p.R401I 0.18 tolerated(0.1) probably_damaging(0.985) TCGA-HU-A4GQ-01 7 36194488 36194488 C T EEPD1 Silent p.A185A 0.24 TCGA-HU-A4GQ-01 7 37890310 37890310 C T NME8 Silent p.N57N 0.12 TCGA-HU-A4GQ-01 7 37951824 37951824 T C SFRP4 Missense_Mutation p.I230V 0.05 tolerated(0.08) benign(0.306) TCGA-HU-A4GQ-01 7 38313227 38313227 T - TRGJP Frame_Shift_Del p.I8Sfs*? 0.24 TCGA-HU-A4GQ-01 7 38402929 38402929 T C TRGV2 Translation_Start_Site p.M1? 0.32 deleterious(0) probably_damaging(0.987) TCGA-HU-A4GQ-01 7 4153777 4153777 C T SDK1 Missense_Mutation p.R1232W 0.15 deleterious(0) possibly_damaging(0.871) TCGA-HU-A4GQ-01 7 42949913 42949913 T C C7orf25 Missense_Mutation p.N254S 0.31 tolerated(0.2) benign(0.025) TCGA-HU-A4GQ-01 7 43547711 43547711 A G HECW1 Missense_Mutation p.T1283A 0.17 tolerated(0.06) benign(0.253) TCGA-HU-A4GQ-01 7 43917048 43917048 C T URGCP Missense_Mutation p.V672I 0.19 tolerated(0.07) benign(0.004) TCGA-HU-A4GQ-01 7 44099178 44099178 C T DBNL Missense_Mutation p.P332L 0.18 tolerated(0.16) benign(0.018) TCGA-HU-A4GQ-01 7 44805625 44805625 C T ZMIZ2 Intron 0.50 TCGA-HU-A4GQ-01 7 44836311 44836311 T C PPIA 5'UTR 0.21 TCGA-HU-A4GQ-01 7 45750148 45750148 T A ADCY1 Missense_Mutation p.V985E 0.13 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 7 47876598 47876598 G A PKD1L1 Missense_Mutation p.P1955L 0.20 deleterious(0.05) benign(0.145) TCGA-HU-A4GQ-01 7 47917170 47917170 G A PKD1L1 Missense_Mutation p.R1194W 0.41 deleterious(0.03) benign(0.017) TCGA-HU-A4GQ-01 7 4830330 4830330 G A AP5Z1 Silent p.S655S 0.11 TCGA-HU-A4GQ-01 7 4899860 4899860 C T PAPOLB Missense_Mutation p.A527T 0.15 tolerated(0.57) benign(0.001) TCGA-HU-A4GQ-01 7 4947141 4947141 G A MMD2 Silent p.P233P 0.05 TCGA-HU-A4GQ-01 7 5266847 5266847 C T WIPI2 Silent p.F295F 0.39 TCGA-HU-A4GQ-01 7 53103537 53103537 T C POM121L12 Missense_Mutation p.L58P 0.20 tolerated(0.29) benign(0) TCGA-HU-A4GQ-01 7 5353327 5353327 C T TNRC18 Missense_Mutation p.A2399T 0.14 possibly_damaging(0.499) TCGA-HU-A4GQ-01 7 5410321 5410321 C - TNRC18 Frame_Shift_Del p.E1302Rfs*41 0.44 TCGA-HU-A4GQ-01 7 55467786 55467786 G T LANCL2 Missense_Mutation p.A223S 0.13 tolerated(0.4) benign(0.016) TCGA-HU-A4GQ-01 7 56126070 56126071 - T CCT6A Frame_Shift_Ins p.Y250Lfs*14 0.25 TCGA-HU-A4GQ-01 7 63982808 63982808 T C ZNF680 Missense_Mutation p.I108M 0.11 deleterious(0.04) probably_damaging(0.926) TCGA-HU-A4GQ-01 7 64453024 64453024 T C ERV3-1 Silent p.V127V 0.67 TCGA-HU-A4GQ-01 7 6624647 6624648 GT - ZDHHC4 Frame_Shift_Del p.C168* 0.26 TCGA-HU-A4GQ-01 7 71036318 71036318 C T WBSCR17 Silent p.F337F 0.52 TCGA-HU-A4GQ-01 7 72413373 72413373 G A POM121 Silent p.T682T 0.12 TCGA-HU-A4GQ-01 7 73008616 73008616 C T MLXIPL Missense_Mutation p.A810T 0.13 tolerated(0.17) benign(0.063) TCGA-HU-A4GQ-01 7 73119447 73119447 C T STX1A Intron 0.11 TCGA-HU-A4GQ-01 7 73456948 73456948 C T ELN Silent p.L79L 0.15 TCGA-HU-A4GQ-01 7 74211440 74211440 G A GTF2IRD2 Missense_Mutation p.A804V 0.16 tolerated(0.11) benign(0.04) TCGA-HU-A4GQ-01 7 75104371 75104371 G A POM121C 5'UTR 0.26 TCGA-HU-A4GQ-01 7 75178286 75178286 C T HIP1 Missense_Mutation p.R770K 0.17 tolerated(1) benign(0.003) TCGA-HU-A4GQ-01 7 75441248 75441248 C T CCL24 Missense_Mutation p.D76N 0.16 tolerated(0.2) benign(0.289) TCGA-HU-A4GQ-01 7 76825678 76825678 A G FGL2 Missense_Mutation p.V413A 0.09 tolerated(0.11) benign(0.008) TCGA-HU-A4GQ-01 7 76982304 76982304 A G GSAP Missense_Mutation p.M483T 0.34 deleterious(0) benign(0.018) TCGA-HU-A4GQ-01 7 77379031 77379031 C T RSBN1L Nonsense_Mutation p.R332* 0.11 TCGA-HU-A4GQ-01 7 77408242 77408242 T C RSBN1L Silent p.P766P 0.10 TCGA-HU-A4GQ-01 7 77807330 77807330 G A MAGI2 Missense_Mutation p.P801S 0.32 tolerated(0.17) possibly_damaging(0.472) TCGA-HU-A4GQ-01 7 796463 796463 G T HEATR2 Missense_Mutation p.E434D 0.14 tolerated(0.05) benign(0.143) TCGA-HU-A4GQ-01 7 8124630 8124630 G T GLCCI1 Missense_Mutation p.K427N 0.36 deleterious(0) probably_damaging(0.985) TCGA-HU-A4GQ-01 7 82585021 82585022 - T PCLO Frame_Shift_Ins p.G1750Rfs*22 0.28 TCGA-HU-A4GQ-01 7 82585203 82585204 - T PCLO Frame_Shift_Ins p.T1689Nfs*6 0.36 TCGA-HU-A4GQ-01 7 83606510 83606510 C T SEMA3A Missense_Mutation p.R552H 0.12 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GQ-01 7 86468893 86468893 A G GRM3 Missense_Mutation p.Q688R 0.20 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 7 899919 899919 G A SUN1 Missense_Mutation p.R560Q 0.20 tolerated(0.17) benign(0.002) TCGA-HU-A4GQ-01 7 92161755 92161755 G A RBM48 Missense_Mutation p.G114S 0.44 deleterious(0.04) possibly_damaging(0.896) TCGA-HU-A4GQ-01 7 92163936 92163938 CTC - RBM48 In_Frame_Del p.S225del 0.21 TCGA-HU-A4GQ-01 7 92731909 92731909 G A SAMD9 Nonsense_Mutation p.Q1168* 0.22 TCGA-HU-A4GQ-01 7 94045723 94045723 C T COL1A2 Missense_Mutation p.R591C 0.30 unknown(0) TCGA-HU-A4GQ-01 7 94050333 94050333 C - COL1A2 Frame_Shift_Del p.G772Vfs*14 0.19 TCGA-HU-A4GQ-01 7 94050368 94050368 C - COL1A2 Frame_Shift_Del p.P783Lfs*3 0.17 TCGA-HU-A4GQ-01 7 95039303 95039303 G T PON2 Missense_Mutation p.A202E 0.22 deleterious(0.01) benign(0.219) TCGA-HU-A4GQ-01 7 95709775 95709775 G A DYNC1I1 Missense_Mutation p.R601H 0.23 tolerated(0.13) benign(0.028) TCGA-HU-A4GQ-01 7 97946626 97946626 C T BAIAP2L1 Missense_Mutation p.E131K 0.20 deleterious(0) benign(0.065) TCGA-HU-A4GQ-01 7 99042416 99042416 G A CPSF4 Silent p.S36S 0.46 TCGA-HU-A4GQ-01 7 99377640 99377640 A - CYP3A4 Frame_Shift_Del p.L47Wfs*43 0.35 TCGA-HU-A4GQ-01 7 99794836 99794836 A C STAG3 Missense_Mutation p.Q333H 0.31 deleterious(0.03) benign(0.053) TCGA-HU-A4GQ-01 8 100286468 100286468 T C VPS13B Missense_Mutation p.I853T 0.28 deleterious(0.01) possibly_damaging(0.507) TCGA-HU-A4GQ-01 8 101075899 101075899 A - RGS22 Frame_Shift_Del p.L366* 0.35 TCGA-HU-A4GQ-01 8 101596388 101596388 T - SNX31 Frame_Shift_Del p.K374Rfs*2 0.10 TCGA-HU-A4GQ-01 8 110598313 110598314 - T SYBU Frame_Shift_Ins p.S169Kfs*17 0.27 TCGA-HU-A4GQ-01 8 110984517 110984517 G A KCNV1 Missense_Mutation p.R321C 0.24 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GQ-01 8 11157581 11157581 G A MTMR9 Missense_Mutation p.R114H 0.17 deleterious(0) probably_damaging(0.978) TCGA-HU-A4GQ-01 8 113348969 113348969 A - CSMD3 Frame_Shift_Del p.W2311Gfs*3 0.30 TCGA-HU-A4GQ-01 8 11565838 11565838 C T GATA4 Missense_Mutation p.A6V 0.26 deleterious(0) possibly_damaging(0.64) TCGA-HU-A4GQ-01 8 120114626 120114626 A - COLEC10 Frame_Shift_Del p.G113Afs*30 0.17 TCGA-HU-A4GQ-01 8 121222066 121222066 G A COL14A1 Missense_Mutation p.A465T 0.18 tolerated(0.21) benign(0.013) TCGA-HU-A4GQ-01 8 12285288 12285288 A G FAM86B2 Missense_Mutation p.V257A 0.13 tolerated(0.54) benign(0.119) TCGA-HU-A4GQ-01 8 124381406 124381406 T C ATAD2 Missense_Mutation p.H314R 0.30 tolerated(0.23) benign(0.017) TCGA-HU-A4GQ-01 8 125035715 125035715 G A FER1L6 Nonsense_Mutation p.W722* 0.47 TCGA-HU-A4GQ-01 8 126021272 126021272 C T SQLE Silent p.S294S 0.19 TCGA-HU-A4GQ-01 8 126445691 126445691 G - TRIB1 Frame_Shift_Del p.D166Tfs*41 0.29 TCGA-HU-A4GQ-01 8 12863855 12863855 C T KIAA1456 Silent p.I48I 0.35 TCGA-HU-A4GQ-01 8 12956932 12956932 T C DLC1 Missense_Mutation p.N972D 0.18 tolerated(0.06) possibly_damaging(0.549) TCGA-HU-A4GQ-01 8 139606332 139606332 C T COL22A1 Missense_Mutation p.G1515S 0.45 unknown(0) TCGA-HU-A4GQ-01 8 141595331 141595331 G A AGO2 Silent p.S34S 0.20 TCGA-HU-A4GQ-01 8 142151514 142151514 G - DENND3 Intron 0.35 TCGA-HU-A4GQ-01 8 142222398 142222398 C T SLC45A4 Silent p.P682P 0.52 TCGA-HU-A4GQ-01 8 142437063 142437063 C - PTP4A3 Frame_Shift_Del p.P76Rfs*5 0.32 TCGA-HU-A4GQ-01 8 144658969 144658969 G A NAPRT1 Missense_Mutation p.A243V 0.56 tolerated(1) benign(0.004) TCGA-HU-A4GQ-01 8 144681106 144681106 C T TIGD5 Missense_Mutation p.R345C 0.16 tolerated(0.11) possibly_damaging(0.616) TCGA-HU-A4GQ-01 8 144688310 144688310 G A PYCRL Silent p.S200S 0.33 TCGA-HU-A4GQ-01 8 144776083 144776083 C T ZNF707 Missense_Mutation p.R167W 0.18 deleterious(0.03) possibly_damaging(0.539) TCGA-HU-A4GQ-01 8 144808130 144808130 G A FAM83H Silent p.F1167F 0.09 TCGA-HU-A4GQ-01 8 144943454 144943454 G A EPPK1 Missense_Mutation p.A1323V 0.50 benign(0.383) TCGA-HU-A4GQ-01 8 144990675 144990675 A G PLEC Silent p.P4575P 0.16 TCGA-HU-A4GQ-01 8 144999954 144999954 C A PLEC Missense_Mutation p.Q1518H 0.20 unknown(0) TCGA-HU-A4GQ-01 8 145057175 145057175 G A PARP10 Silent p.T827T 0.13 TCGA-HU-A4GQ-01 8 145095767 145095767 C A SPATC1 Silent p.T355T 0.29 TCGA-HU-A4GQ-01 8 145109481 145109481 C - OPLAH Frame_Shift_Del p.G890Afs*8 0.26 TCGA-HU-A4GQ-01 8 145661488 145661488 G A TONSL Silent p.P776P 0.33 TCGA-HU-A4GQ-01 8 145737867 145737867 T C RECQL4 Missense_Mutation p.D988G 0.36 deleterious(0.03) benign(0.067) TCGA-HU-A4GQ-01 8 145749698 145749698 C T LRRC14 3'UTR 0.42 TCGA-HU-A4GQ-01 8 146156252 146156252 G A ZNF16 Missense_Mutation p.R641C 0.23 tolerated(0.12) benign(0.016) TCGA-HU-A4GQ-01 8 17188712 17188712 A G MTMR7 Missense_Mutation p.I271T 0.19 deleterious(0.02) probably_damaging(0.994) TCGA-HU-A4GQ-01 8 1719190 1719190 C T CLN8 5'UTR 0.39 TCGA-HU-A4GQ-01 8 19684046 19684046 A G INTS10 Silent p.L372L 0.26 TCGA-HU-A4GQ-01 8 2040189 2040189 C T MYOM2 Missense_Mutation p.P615L 0.37 deleterious(0) probably_damaging(0.916) TCGA-HU-A4GQ-01 8 21560457 21560457 C T GFRA2 Missense_Mutation p.D360N 0.11 deleterious(0.01) probably_damaging(0.94) TCGA-HU-A4GQ-01 8 22548299 22548299 C T EGR3 Missense_Mutation p.R284H 0.42 deleterious(0) probably_damaging(0.973) TCGA-HU-A4GQ-01 8 23290492 23290492 C T ENTPD4 Missense_Mutation p.A600T 0.50 tolerated(0.32) benign(0.001) TCGA-HU-A4GQ-01 8 24304705 24304705 T C ADAM7 Missense_Mutation p.Y55H 0.03 deleterious(0.04) probably_damaging(0.992) TCGA-HU-A4GQ-01 8 24349444 24349444 C T ADAM7 Missense_Mutation p.P462L 0.34 deleterious(0.04) benign(0.391) TCGA-HU-A4GQ-01 8 24771390 24771390 C A NEFM Missense_Mutation p.S28R 0.29 deleterious(0.04) unknown(0) TCGA-HU-A4GQ-01 8 24772171 24772171 G A NEFM Missense_Mutation p.E289K 0.20 deleterious(0) unknown(0) TCGA-HU-A4GQ-01 8 24813101 24813101 C T CTD-2168K21.2 5'Flank 0.21 TCGA-HU-A4GQ-01 8 24813732 24813732 G A CTD-2168K21.2 5'Flank 0.42 TCGA-HU-A4GQ-01 8 25323825 25323825 C T CDCA2 Silent p.S174S 0.27 TCGA-HU-A4GQ-01 8 25902265 25902265 G A EBF2 Silent p.D37D 0.39 TCGA-HU-A4GQ-01 8 26237115 26237115 G A BNIP3L 5'Flank 0.40 TCGA-HU-A4GQ-01 8 26906403 26906403 G A MIR548H4 RNA 0.47 TCGA-HU-A4GQ-01 8 27634065 27634065 G A ESCO2 Silent p.A80A 0.45 TCGA-HU-A4GQ-01 8 28206714 28206714 G T ZNF395 Missense_Mutation p.P453H 0.10 tolerated(0.28) benign(0.202) TCGA-HU-A4GQ-01 8 32453511 32453511 A - NRG1 Frame_Shift_Del p.K91Sfs*24 0.28 TCGA-HU-A4GQ-01 8 37823754 37823754 C T ADRB3 Silent p.S78S 0.16 TCGA-HU-A4GQ-01 8 38793535 38793535 T C PLEKHA2 Silent p.A55A 0.20 TCGA-HU-A4GQ-01 8 3889462 3889462 C T CSMD1 Missense_Mutation p.G192D 0.43 probably_damaging(1) TCGA-HU-A4GQ-01 8 41166309 41166309 G A SFRP1 Missense_Mutation p.R124W 0.27 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GQ-01 8 41397444 41397444 G A GINS4 Silent p.A135A 0.16 TCGA-HU-A4GQ-01 8 41397521 41397521 C T GINS4 Missense_Mutation p.A161V 0.19 tolerated(0.58) benign(0.005) TCGA-HU-A4GQ-01 8 42026641 42026641 A - AP3M2 3'UTR 0.57 TCGA-HU-A4GQ-01 8 42294538 42294538 C T SLC20A2 Missense_Mutation p.G498R 0.10 deleterious(0) probably_damaging(0.994) TCGA-HU-A4GQ-01 8 42977374 42977374 C T POMK Missense_Mutation p.T136M 0.45 tolerated(0.1) benign(0.075) TCGA-HU-A4GQ-01 8 48746918 48746918 G A PRKDC Missense_Mutation p.T2663I 0.43 benign(0.001) TCGA-HU-A4GQ-01 8 52384839 52384839 C T PXDNL Silent p.P240P 0.19 TCGA-HU-A4GQ-01 8 53853402 53853402 C T NPBWR1 Missense_Mutation p.A312V 0.15 deleterious(0.02) benign(0.001) TCGA-HU-A4GQ-01 8 54147537 54147537 C T OPRK1 Missense_Mutation p.C131Y 0.11 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 8 57026480 57026480 G A MOS Missense_Mutation p.A21V 0.35 tolerated(1) benign(0.057) TCGA-HU-A4GQ-01 8 61743069 61743069 C T CHD7 Silent p.N1237N 0.50 TCGA-HU-A4GQ-01 8 61748719 61748719 C T CHD7 Missense_Mutation p.A1289V 0.34 possibly_damaging(0.867) TCGA-HU-A4GQ-01 8 61749516 61749516 C T CHD7 Missense_Mutation p.A1377V 0.44 probably_damaging(0.997) TCGA-HU-A4GQ-01 8 61777588 61777588 A G CHD7 Missense_Mutation p.E2697G 0.55 probably_damaging(0.968) TCGA-HU-A4GQ-01 8 62475336 62475336 T C ASPH Silent p.G468G 0.20 TCGA-HU-A4GQ-01 8 66582207 66582207 G A MTFR1 Missense_Mutation p.R7H 0.42 tolerated(0.24) benign(0.005) TCGA-HU-A4GQ-01 8 67062469 67062469 A - TRIM55 Frame_Shift_Del p.I288Sfs*13 0.17 TCGA-HU-A4GQ-01 8 6793553 6793553 G A DEFA4 Missense_Mutation p.R95C 0.39 deleterious_low_confidence(0.02) benign(0.001) TCGA-HU-A4GQ-01 8 69552649 69552649 C T C8orf34 Silent p.L382L 0.30 TCGA-HU-A4GQ-01 8 70540063 70540063 G T SULF1 Missense_Mutation p.K668N 0.16 deleterious(0) probably_damaging(0.991) TCGA-HU-A4GQ-01 8 72948624 72948624 A - TRPA1 Frame_Shift_Del p.F818Lfs*27 0.20 TCGA-HU-A4GQ-01 8 72968076 72968077 TT - TRPA1 Frame_Shift_Del p.K403Rfs*6 0.22 TCGA-HU-A4GQ-01 8 74526053 74526053 T A STAU2 Nonsense_Mutation p.K273* 0.52 TCGA-HU-A4GQ-01 8 85441711 85441711 C T RALYL Missense_Mutation p.S65F 0.20 deleterious(0.03) possibly_damaging(0.799) TCGA-HU-A4GQ-01 8 86114407 86114407 A - E2F5 Frame_Shift_Del p.R89Gfs*10 0.17 TCGA-HU-A4GQ-01 8 86354377 86354377 A G CA3 Missense_Mutation p.H103R 0.42 tolerated(0.45) benign(0.378) TCGA-HU-A4GQ-01 8 8749154 8749154 C T MFHAS1 Missense_Mutation p.R472Q 0.18 tolerated(0.36) benign(0.147) TCGA-HU-A4GQ-01 8 8865587 8865587 G A ERI1 Silent p.T72T 0.49 TCGA-HU-A4GQ-01 8 90965666 90965666 T - NBN Frame_Shift_Del p.R551Gfs*8 0.21 TCGA-HU-A4GQ-01 8 94738661 94738661 C T FAM92A1 Missense_Mutation p.R233C 0.38 deleterious(0.04) benign(0.002) TCGA-HU-A4GQ-01 8 95952276 95952277 - CT TP53INP1 Frame_Shift_Ins p.S95Rfs*16 0.29 TCGA-HU-A4GQ-01 9 101530424 101530424 G A ANKS6 Missense_Mutation p.P694L 0.33 deleterious(0.03) benign(0.003) TCGA-HU-A4GQ-01 9 103271406 103271406 A G TMEFF1 Silent p.P142P 0.37 TCGA-HU-A4GQ-01 9 104075105 104075105 C T LPPR1 Missense_Mutation p.T221M 0.15 deleterious(0.03) probably_damaging(0.98) TCGA-HU-A4GQ-01 9 112042122 112042122 T C EPB41L4B Missense_Mutation p.Q129R 0.27 tolerated(0.68) probably_damaging(0.996) TCGA-HU-A4GQ-01 9 112185106 112185106 T - PTPN3 Frame_Shift_Del p.K343Rfs*2 0.23 TCGA-HU-A4GQ-01 9 113538217 113538217 C T MUSK Missense_Mutation p.T445M 0.20 tolerated(0.12) benign(0.001) TCGA-HU-A4GQ-01 9 115598612 115598612 G A SNX30 Missense_Mutation p.G246D 0.24 tolerated(0.14) possibly_damaging(0.603) TCGA-HU-A4GQ-01 9 116124670 116124670 G A BSPRY Missense_Mutation p.E185K 0.26 deleterious(0.01) possibly_damaging(0.728) TCGA-HU-A4GQ-01 9 116171909 116171910 - G POLE3 Frame_Shift_Ins p.L85Ifs*9 0.22 TCGA-HU-A4GQ-01 9 116267792 116267792 C T RGS3 Missense_Mutation p.A323V 0.20 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 9 121557 121557 C A CBWD1 Missense_Mutation p.K366N 0.12 deleterious(0.03) possibly_damaging(0.76) TCGA-HU-A4GQ-01 9 123367553 123367553 G A MEGF9 Missense_Mutation p.S575L 0.29 deleterious(0) probably_damaging(0.997) TCGA-HU-A4GQ-01 9 123943720 123943720 C T RAB14 Missense_Mutation p.R201Q 0.30 tolerated(0.28) benign(0.002) TCGA-HU-A4GQ-01 9 124914576 124914576 G A NDUFA8 Missense_Mutation p.R55W 0.25 deleterious(0) possibly_damaging(0.586) TCGA-HU-A4GQ-01 9 125627678 125627678 G A RC3H2 Silent p.G528G 0.17 TCGA-HU-A4GQ-01 9 125861042 125861042 A - RABGAP1 Frame_Shift_Del p.N930Tfs*15 0.27 TCGA-HU-A4GQ-01 9 129184191 129184191 T C MVB12B Missense_Mutation p.Y241H 0.25 tolerated(0.37) benign(0.081) TCGA-HU-A4GQ-01 9 129458222 129458222 G A LMX1B Missense_Mutation p.D342N 0.27 deleterious(0.03) probably_damaging(0.964) TCGA-HU-A4GQ-01 9 130149474 130149474 G A GARNL3 Silent p.S797S 0.18 TCGA-HU-A4GQ-01 9 130187023 130187023 G A ZNF79 5'UTR 0.25 TCGA-HU-A4GQ-01 9 130213672 130213672 C T RPL12 5'UTR 0.37 TCGA-HU-A4GQ-01 9 130269087 130269087 G A FAM129B 3'UTR 0.34 TCGA-HU-A4GQ-01 9 130548398 130548398 G - CDK9 5'UTR 0.27 TCGA-HU-A4GQ-01 9 130911884 130911884 T C LCN2 Missense_Mutation p.L27P 0.31 tolerated(0.08) benign(0.016) TCGA-HU-A4GQ-01 9 131222859 131222859 C - ODF2 Intron 0.27 TCGA-HU-A4GQ-01 9 131355282 131355282 C T SPTAN1 Missense_Mutation p.A1059V 0.14 tolerated(0.65) benign(0.006) TCGA-HU-A4GQ-01 9 131475388 131475388 G A PKN3 Missense_Mutation p.R298H 0.29 deleterious(0) probably_damaging(0.912) TCGA-HU-A4GQ-01 9 131515484 131515484 G A ZER1 Silent p.S235S 0.36 TCGA-HU-A4GQ-01 9 131587086 131587087 AG - C9orf114 Frame_Shift_Del p.Y259Lfs*17 0.19 TCGA-HU-A4GQ-01 9 133945082 133945082 G A LAMC3 Missense_Mutation p.A972T 0.41 deleterious(0.02) benign(0.104) TCGA-HU-A4GQ-01 9 134003063 134003065 TCT - NUP214 In_Frame_Del p.L68del 0.21 TCGA-HU-A4GQ-01 9 134351152 134351152 C T PRRC2B Silent p.C1212C 0.26 TCGA-HU-A4GQ-01 9 135102326 135102326 C T NTNG2 Silent p.C316C 0.39 TCGA-HU-A4GQ-01 9 135102359 135102359 C A NTNG2 Silent p.S327S 0.23 TCGA-HU-A4GQ-01 9 135116378 135116378 G T NTNG2 Missense_Mutation p.G435V 0.16 deleterious(0.01) probably_damaging(0.987) TCGA-HU-A4GQ-01 9 135277388 135277388 T - TTF1 Frame_Shift_Del p.K274Sfs*149 0.28 TCGA-HU-A4GQ-01 9 136028948 136028949 - C GBGT1 3'UTR 0.25 TCGA-HU-A4GQ-01 9 136308546 136308546 C A ADAMTS13 Missense_Mutation p.L762M 0.29 tolerated(0.1) possibly_damaging(0.905) TCGA-HU-A4GQ-01 9 137696842 137696842 C A COL5A1 Missense_Mutation p.L1046I 0.27 unknown(0) TCGA-HU-A4GQ-01 9 137777200 137777201 - G FCN2 Frame_Shift_Ins p.W142Lfs*37 0.17 TCGA-HU-A4GQ-01 9 139265589 139265589 C T CARD9 Missense_Mutation p.G111R 0.23 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 9 139273210 139273210 G A SNAPC4 Silent p.L1023L 0.36 TCGA-HU-A4GQ-01 9 139326317 139326317 G A INPP5E Missense_Mutation p.A503V 0.26 tolerated(0.17) benign(0.001) TCGA-HU-A4GQ-01 9 139342121 139342121 C T SEC16A Silent p.P2153P 0.14 TCGA-HU-A4GQ-01 9 139639702 139639702 G C LCN6 Missense_Mutation p.A111G 0.21 tolerated(1) benign(0.007) TCGA-HU-A4GQ-01 9 139909513 139909513 G A ABCA2 Missense_Mutation p.P1245L 0.28 tolerated(0.35) benign(0.002) TCGA-HU-A4GQ-01 9 140051349 140051349 C T GRIN1 Silent p.N297N 0.27 TCGA-HU-A4GQ-01 9 140086518 140086518 G A TPRN 3'UTR 0.15 TCGA-HU-A4GQ-01 9 140099695 140099695 C T TMEM203 Missense_Mutation p.G58R 0.35 tolerated(0.11) possibly_damaging(0.684) TCGA-HU-A4GQ-01 9 140147690 140147690 C T C9orf173 Silent p.H312H 0.15 TCGA-HU-A4GQ-01 9 140174021 140174021 G A TOR4A Missense_Mutation p.A294T 0.35 deleterious(0) possibly_damaging(0.49) TCGA-HU-A4GQ-01 9 140329730 140329730 A G ENTPD8 Missense_Mutation p.Y408H 0.19 deleterious(0) probably_damaging(0.997) TCGA-HU-A4GQ-01 9 140356679 140356679 G - PNPLA7 Frame_Shift_Del p.I1200Sfs*148 0.21 TCGA-HU-A4GQ-01 9 140508461 140508461 C A ARRDC1 Intron 0.23 TCGA-HU-A4GQ-01 9 15564035 15564035 G A CCDC171 5'UTR 0.29 TCGA-HU-A4GQ-01 9 17484353 17484353 A - CNTLN Frame_Shift_Del p.M1308* 0.25 TCGA-HU-A4GQ-01 9 19119688 19119689 - T PLIN2 Frame_Shift_Ins p.S246Kfs*16 0.22 TCGA-HU-A4GQ-01 9 21201602 21201602 T C IFNA7 Missense_Mutation p.K188R 0.28 tolerated(0.09) benign(0.095) TCGA-HU-A4GQ-01 9 21333734 21333734 C T KLHL9 Silent p.R375R 0.26 TCGA-HU-A4GQ-01 9 21367854 21367854 G A IFNA13 Silent p.S52S 0.19 TCGA-HU-A4GQ-01 9 2647580 2647580 G A VLDLR Missense_Mutation p.G604R 0.16 deleterious(0) probably_damaging(1) TCGA-HU-A4GQ-01 9 27455271 27455271 C - MOB3B Frame_Shift_Del p.G93Afs*26 0.24 TCGA-HU-A4GQ-01 9 32633790 32633790 T A TAF1L Missense_Mutation p.Q596H 0.26 tolerated(0.06) possibly_damaging(0.472) TCGA-HU-A4GQ-01 9 32973609 32973609 G A APTX Nonsense_Mutation p.R306* 0.42 TCGA-HU-A4GQ-01 9 34370860 34370860 C A KIAA1161 Silent p.P660P 0.32 TCGA-HU-A4GQ-01 9 34401027 34401028 - G FAM219A Frame_Shift_Ins p.K165Qfs*39 0.21 TCGA-HU-A4GQ-01 9 35095104 35095104 G A PIGO Silent p.F153F 0.29 TCGA-HU-A4GQ-01 9 35450159 35450159 A - ATP8B5P RNA 0.17 TCGA-HU-A4GQ-01 9 35547693 35547693 C T RUSC2 Missense_Mutation p.A392V 0.22 deleterious(0) probably_damaging(0.993) TCGA-HU-A4GQ-01 9 35607360 35607360 G A TESK1 Missense_Mutation p.A192T 0.24 deleterious(0) probably_damaging(0.995) TCGA-HU-A4GQ-01 9 35736104 35736104 C T CREB3 Missense_Mutation p.T224I 0.30 deleterious(0) possibly_damaging(0.467) TCGA-HU-A4GQ-01 9 38068427 38068427 G A SHB Silent p.D72D 0.50 TCGA-HU-A4GQ-01 9 38395768 38395768 G A ALDH1B1 Missense_Mutation p.R8Q 0.19 tolerated(0.2) benign(0.002) TCGA-HU-A4GQ-01 9 38396542 38396542 T C ALDH1B1 Missense_Mutation p.V266A 0.29 deleterious(0.01) benign(0.013) TCGA-HU-A4GQ-01 9 40772343 40772343 T A ZNF658 Nonsense_Mutation p.K978* 0.22 TCGA-HU-A4GQ-01 9 43625469 43625469 G A SPATA31A6 Missense_Mutation p.A1073V 0.26 tolerated(0.08) benign(0.332) TCGA-HU-A4GQ-01 9 70993145 70993145 A G PGM5 Missense_Mutation p.I98V 0.11 deleterious(0.01) possibly_damaging(0.573) TCGA-HU-A4GQ-01 9 73152123 73152123 C T TRPM3 Silent p.T1290T 0.27 TCGA-HU-A4GQ-01 9 73225584 73225584 G - TRPM3 Frame_Shift_Del p.L858Sfs*14 0.20 TCGA-HU-A4GQ-01 9 73233869 73233869 C T TRPM3 Missense_Mutation p.D746N 0.29 tolerated(0.1) possibly_damaging(0.791) TCGA-HU-A4GQ-01 9 740797 740797 T C KANK1 Missense_Mutation p.C1187R 0.27 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GQ-01 9 8485951 8485951 G T PTPRD Missense_Mutation p.L956I 0.28 tolerated(0.25) benign(0.009) TCGA-HU-A4GQ-01 9 87482168 87482168 C T NTRK2 Silent p.S485S 0.22 TCGA-HU-A4GQ-01 9 88937944 88937944 G A ZCCHC6 Silent p.D907D 0.24 TCGA-HU-A4GQ-01 9 90263711 90263711 C A DAPK1 Missense_Mutation p.L449I 0.21 deleterious(0.05) probably_damaging(0.997) TCGA-HU-A4GQ-01 9 91617033 91617033 G A S1PR3 Silent p.R306R 0.27 TCGA-HU-A4GQ-01 9 95077300 95077300 C T NOL8 Missense_Mutation p.R536Q 0.31 tolerated(0.36) benign(0.002) TCGA-HU-A4GQ-01 9 95477523 95477523 G T BICD2 Silent p.T827T 0.28 TCGA-HU-A4GQ-01 9 96261128 96261128 G A FAM120A Silent p.A330A 0.29 TCGA-HU-A4GQ-01 9 98678534 98678534 G T ERCC6L2 Missense_Mutation p.G337W 0.19 tolerated(0.19) benign(0.005) TCGA-HU-A4GQ-01 9 99403899 99403899 G A AAED1 3'UTR 0.50 TCGA-HU-A4GQ-01 X 100667062 100667062 G A HNRNPH2 Missense_Mutation p.R29H 0.23 tolerated(0.15) benign(0.005) TCGA-HU-A4GQ-01 X 100912632 100912632 G A ARMCX2 5'UTR 0.60 TCGA-HU-A4GQ-01 X 101858527 101858527 G A ARMCX5 Silent p.E486E 0.50 TCGA-HU-A4GQ-01 X 107018464 107018464 G A TSC22D3 Silent p.T62T 0.54 TCGA-HU-A4GQ-01 X 107978313 107978313 C A IRS4 Missense_Mutation p.R421M 0.55 deleterious(0) probably_damaging(0.986) TCGA-HU-A4GQ-01 X 107978481 107978481 G A IRS4 Missense_Mutation p.P365L 0.53 deleterious(0) possibly_damaging(0.85) TCGA-HU-A4GQ-01 X 109764983 109764983 G A TDGF1P3 RNA 0.56 TCGA-HU-A4GQ-01 X 111000877 111000877 A G ALG13 Missense_Mutation p.H1012R 0.52 tolerated(0.48) benign(0.198) TCGA-HU-A4GQ-01 X 113949753 113949753 C A HTR2C Intron 0.50 TCGA-HU-A4GQ-01 X 11682375 11682375 C T ARHGAP6 Missense_Mutation p.V192M 0.53 tolerated(0.09) benign(0.015) TCGA-HU-A4GQ-01 X 129200998 129200998 C A ELF4 Nonsense_Mutation p.E564* 0.56 TCGA-HU-A4GQ-01 X 134494267 134494268 - C ZNF449 Frame_Shift_Ins p.E278Rfs*23 0.29 TCGA-HU-A4GQ-01 X 135594074 135594075 - G HTATSF1 Frame_Shift_Ins p.T726Dfs*9 0.38 TCGA-HU-A4GQ-01 X 141290965 141290965 G T MAGEC2 Missense_Mutation p.P270H 0.55 deleterious(0) probably_damaging(0.989) TCGA-HU-A4GQ-01 X 151820208 151820208 G A GABRQ Missense_Mutation p.R374H 0.53 tolerated(0.13) benign(0.141) TCGA-HU-A4GQ-01 X 152959879 152959879 C T SLC6A8 Silent p.C491C 0.49 TCGA-HU-A4GQ-01 X 153133800 153133800 G A L1CAM Missense_Mutation p.R554C 0.58 deleterious(0) probably_damaging(0.969) TCGA-HU-A4GQ-01 X 153178181 153178182 AA - ARHGAP4 Frame_Shift_Del p.F545Wfs*34 0.38 TCGA-HU-A4GQ-01 X 153219890 153219890 C T HCFC1 Silent p.P1320P 0.51 TCGA-HU-A4GQ-01 X 1540581 1540581 C T ASMTL Silent p.A405A 0.32 TCGA-HU-A4GQ-01 X 155004291 155004291 A T SPRY3 Missense_Mutation p.D253V 0.29 deleterious(0) probably_damaging(0.995) TCGA-HU-A4GQ-01 X 18646647 18646647 G A CDKL5 Missense_Mutation p.G885R 0.51 deleterious_low_confidence(0) benign(0.055) TCGA-HU-A4GQ-01 X 19560215 19560215 G - SH3KBP1 Frame_Shift_Del p.L574Cfs*39 0.35 TCGA-HU-A4GQ-01 X 2408016 2408016 G A ZBED1 Nonsense_Mutation p.R249* 0.28 TCGA-HU-A4GQ-01 X 24229134 24229134 A - ZFX Frame_Shift_Del p.M689Cfs*17 0.38 TCGA-HU-A4GQ-01 X 2856188 2856188 C T ARSE Missense_Mutation p.D413N 0.55 deleterious(0) probably_damaging(0.993) TCGA-HU-A4GQ-01 X 31196876 31196876 T - DMD Frame_Shift_Del p.N3378Tfs*24 0.35 TCGA-HU-A4GQ-01 X 32360294 32360294 G T DMD Missense_Mutation p.Q1949K 0.43 benign(0.092) TCGA-HU-A4GQ-01 X 32361293 32361293 T - DMD Frame_Shift_Del p.K1899Nfs*2 0.52 TCGA-HU-A4GQ-01 X 37028708 37028708 C A FAM47C Missense_Mutation p.P742H 0.48 deleterious(0) possibly_damaging(0.847) TCGA-HU-A4GQ-01 X 39914621 39914621 C A BCOR Missense_Mutation p.D1581Y 0.42 deleterious(0) possibly_damaging(0.886) TCGA-HU-A4GQ-01 X 41045867 41045867 T C USP9X Missense_Mutation p.V1219A 0.41 tolerated(0.96) benign(0.014) TCGA-HU-A4GQ-01 X 41082472 41082472 G A USP9X Missense_Mutation p.V2190M 0.64 tolerated(0.41) benign(0.001) TCGA-HU-A4GQ-01 X 44966693 44966693 T C KDM6A Missense_Mutation p.L1306S 0.52 deleterious(0.01) benign(0.206) TCGA-HU-A4GQ-01 X 46434069 46434069 C T CHST7 Missense_Mutation p.R235C 0.47 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GQ-01 X 46434730 46434730 G A CHST7 Missense_Mutation p.R455H 0.73 tolerated(0.09) probably_damaging(0.968) TCGA-HU-A4GQ-01 X 48209552 48209552 C T SSX3 Missense_Mutation p.M112I 0.38 tolerated(0.09) benign(0.02) TCGA-HU-A4GQ-01 X 48458100 48458100 A C WDR13 Missense_Mutation p.E173A 0.60 tolerated(0.95) benign(0.001) TCGA-HU-A4GQ-01 X 48681771 48681771 G A HDAC6 Missense_Mutation p.A988T 0.50 tolerated(0.24) benign(0.011) TCGA-HU-A4GQ-01 X 50054470 50054470 C A CCNB3 Missense_Mutation p.P1101T 0.52 deleterious(0.04) benign(0.214) TCGA-HU-A4GQ-01 X 51238943 51238943 C A NUDT11 Missense_Mutation p.E118D 0.26 tolerated(0.05) benign(0.01) TCGA-HU-A4GQ-01 X 57618726 57618728 GCG - ZXDB In_Frame_Del p.G89del 0.29 TCGA-HU-A4GQ-01 X 63410309 63410309 G - AMER1 Frame_Shift_Del p.P953Qfs*23 0.31 TCGA-HU-A4GQ-01 X 70149524 70149524 G T SLC7A3 Silent p.L108L 0.48 TCGA-HU-A4GQ-01 X 70356270 70356270 G A MED12 Missense_Mutation p.R1722Q 0.54 possibly_damaging(0.493) TCGA-HU-A4GQ-01 X 77301978 77301978 C T ATP7A Missense_Mutation p.R1472C 0.50 tolerated(0.07) probably_damaging(0.932) TCGA-HU-A4GQ-01 X 79965051 79965051 C T BRWD3 Missense_Mutation p.R784H 0.36 deleterious(0.02) benign(0.037) TCGA-HU-A4GQ-01 X 83403063 83403063 T - RPS6KA6 Frame_Shift_Del p.A110Pfs*3 0.30 TCGA-HU-A4GT-01 10 101294988 101294988 A G NKX2-3 Missense_Mutation p.K202R 0.09 deleterious(0.01) probably_damaging(0.982) TCGA-HU-A4GT-01 10 102891414 102891414 G A TLX1 Missense_Mutation p.R39H 0.38 deleterious(0) possibly_damaging(0.662) TCGA-HU-A4GT-01 10 103919299 103919299 A - NOLC1 Frame_Shift_Del p.K280Nfs*3 0.26 TCGA-HU-A4GT-01 10 104230502 104230502 T C TMEM180 Missense_Mutation p.L111P 0.45 deleterious(0) probably_damaging(0.981) TCGA-HU-A4GT-01 10 104595067 104595067 A G CYP17A1 Missense_Mutation p.L127P 0.07 deleterious(0) probably_damaging(0.995) TCGA-HU-A4GT-01 10 104596941 104596942 - T CYP17A1 Frame_Shift_Ins p.Y60Ifs*29 0.18 TCGA-HU-A4GT-01 10 111877150 111877150 A G ADD3 Silent p.L179L 0.17 TCGA-HU-A4GT-01 10 11363338 11363338 G T CELF2 Missense_Mutation p.S428I 0.17 deleterious(0.03) benign(0.209) TCGA-HU-A4GT-01 10 114724358 114724358 C T TCF7L2 Missense_Mutation p.T142M 0.36 tolerated_low_confidence(0.43) benign(0.002) TCGA-HU-A4GT-01 10 114849206 114849206 C - TCF7L2 Intron 0.30 TCGA-HU-A4GT-01 10 114900993 114900993 G A TCF7L2 Silent p.T201T 0.15 TCGA-HU-A4GT-01 10 115411638 115411638 C T NRAP Missense_Mutation p.R200H 0.12 deleterious(0.01) benign(0.066) TCGA-HU-A4GT-01 10 115922341 115922341 C T C10orf118 Intron 0.38 TCGA-HU-A4GT-01 10 116049203 116049203 G A VWA2 Missense_Mutation p.D693N 0.38 deleterious(0.04) benign(0.169) TCGA-HU-A4GT-01 10 1170951 1170951 G A WDR37 Missense_Mutation p.R447Q 0.49 deleterious(0.02) possibly_damaging(0.885) TCGA-HU-A4GT-01 10 118713624 118713626 TCA - KIAA1598 In_Frame_Del p.D121del 0.22 TCGA-HU-A4GT-01 10 119798647 119798647 T - RAB11FIP2 Frame_Shift_Del p.D368Ifs*19 0.28 TCGA-HU-A4GT-01 10 11990443 11990443 T A UPF2 Missense_Mutation p.E1033D 0.60 tolerated(0.62) benign(0.001) TCGA-HU-A4GT-01 10 12071235 12071235 A G UPF2 Silent p.D218D 0.47 TCGA-HU-A4GT-01 10 120883018 120883018 A G FAM45A Missense_Mutation p.T211A 0.17 deleterious(0.04) benign(0.005) TCGA-HU-A4GT-01 10 123279676 123279676 C T FGFR2 Silent p.S252S 0.52 TCGA-HU-A4GT-01 10 124189200 124189200 G A PLEKHA1 Missense_Mutation p.A321T 0.40 tolerated(0.43) benign(0.003) TCGA-HU-A4GT-01 10 124273782 124273782 C T HTRA1 Silent p.D450D 0.23 TCGA-HU-A4GT-01 10 124345642 124345642 T C DMBT1 Missense_Mutation p.V509A 0.24 deleterious(0) unknown(0) TCGA-HU-A4GT-01 10 126673497 126673497 G A ZRANB1 Missense_Mutation p.R688Q 0.44 deleterious(0) probably_damaging(0.996) TCGA-HU-A4GT-01 10 12870783 12870783 C T CAMK1D Missense_Mutation p.T352M 0.36 deleterious(0.04) benign(0.271) TCGA-HU-A4GT-01 10 129682059 129682059 A G CLRN3 Missense_Mutation p.S104P 0.07 deleterious(0) possibly_damaging(0.908) TCGA-HU-A4GT-01 10 131666125 131666125 C - EBF3 Frame_Shift_Del p.G269Vfs*6 0.24 TCGA-HU-A4GT-01 10 135096605 135096605 C T TUBGCP2 Missense_Mutation p.V784I 0.53 tolerated(0.13) benign(0.171) TCGA-HU-A4GT-01 10 16563089 16563089 G A C1QL3 5'UTR 0.30 TCGA-HU-A4GT-01 10 17195434 17195434 G A TRDMT1 Intron 0.27 TCGA-HU-A4GT-01 10 18242334 18242334 G A SLC39A12 Silent p.P43P 0.22 TCGA-HU-A4GT-01 10 18254596 18254596 G A SLC39A12 Missense_Mutation p.R243H 0.31 tolerated(0.08) benign(0.01) TCGA-HU-A4GT-01 10 24813286 24813286 G A KIAA1217 Missense_Mutation p.A831T 0.11 tolerated(0.29) probably_damaging(0.998) TCGA-HU-A4GT-01 10 25861746 25861746 G - GPR158 Frame_Shift_Del p.T564Hfs*18 0.28 TCGA-HU-A4GT-01 10 27408258 27408258 T C YME1L1 Missense_Mutation p.K568R 0.33 deleterious(0.04) probably_damaging(0.944) TCGA-HU-A4GT-01 10 32327717 32327717 T C KIF5B Missense_Mutation p.D144G 0.20 deleterious(0.01) probably_damaging(1) TCGA-HU-A4GT-01 10 33495183 33495183 C T NRP1 Intron 0.14 TCGA-HU-A4GT-01 10 38654370 38654370 A G HSD17B7P2 RNA 0.12 TCGA-HU-A4GT-01 10 38654495 38654495 G T HSD17B7P2 RNA 0.33 TCGA-HU-A4GT-01 10 43881979 43881979 T C HNRNPF 3'UTR 0.11 TCGA-HU-A4GT-01 10 45473190 45473190 G A C10orf10 Missense_Mutation p.P97S 0.33 tolerated(0.08) benign(0) TCGA-HU-A4GT-01 10 47756075 47756075 G A ANXA8L2 Missense_Mutation p.A179T 0.27 deleterious(0.01) benign(0.309) TCGA-HU-A4GT-01 10 50669423 50669424 - C ERCC6 Frame_Shift_Ins p.I1320Dfs*11 0.31 TCGA-HU-A4GT-01 10 50945991 50945991 A G OGDHL Splice_Site p.X839_splice 0.06 TCGA-HU-A4GT-01 10 5435419 5435419 C T TUBAL3 3'UTR 0.32 TCGA-HU-A4GT-01 10 55943276 55943276 C T PCDH15 Silent p.T506T 0.29 TCGA-HU-A4GT-01 10 5955763 5955763 A G FBXO18 Missense_Mutation p.Q473R 0.09 tolerated(0.55) benign(0.005) TCGA-HU-A4GT-01 10 60573627 60573627 A T BICC1 Missense_Mutation p.E805V 0.36 deleterious(0.01) probably_damaging(0.998) TCGA-HU-A4GT-01 10 64159513 64159513 A - ZNF365 Intron 0.32 TCGA-HU-A4GT-01 10 69669181 69669181 C T SIRT1 Missense_Mutation p.P447S 0.24 deleterious(0) probably_damaging(1) TCGA-HU-A4GT-01 10 70513638 70513638 G A CCAR1 Missense_Mutation p.R383H 0.07 deleterious(0.01) probably_damaging(0.964) TCGA-HU-A4GT-01 10 72298851 72298851 C A PALD1 Missense_Mutation p.L525M 0.29 deleterious(0.03) probably_damaging(0.915) TCGA-HU-A4GT-01 10 72468418 72468418 C T ADAMTS14 Missense_Mutation p.R252W 0.34 deleterious(0) probably_damaging(1) TCGA-HU-A4GT-01 10 75255537 75255537 C T PPP3CB Intron 0.20 TCGA-HU-A4GT-01 10 75289520 75289520 A G USP54 Missense_Mutation p.S660P 0.07 deleterious(0) probably_damaging(0.997) TCGA-HU-A4GT-01 10 75391878 75391878 C T MYOZ1 Missense_Mutation p.R237H 0.29 deleterious(0.01) probably_damaging(0.954) TCGA-HU-A4GT-01 10 75407182 75407182 G A SYNPO2L Missense_Mutation p.A743V 0.24 tolerated_low_confidence(0.58) benign(0.001) TCGA-HU-A4GT-01 10 75585057 75585057 C T CAMK2G Missense_Mutation p.A347T 0.11 tolerated_low_confidence(0.78) benign(0.013) TCGA-HU-A4GT-01 10 76790792 76790792 C T KAT6B Silent p.Y2070Y 0.13 TCGA-HU-A4GT-01 10 76854517 76854517 G T DUSP13 Missense_Mutation p.R222S 0.24 deleterious(0) probably_damaging(1) TCGA-HU-A4GT-01 10 79601943 79601943 G A DLG5 Missense_Mutation p.A378V 0.39 tolerated(0.96) benign(0.006) TCGA-HU-A4GT-01 10 85973973 85973973 C T CDHR1 Missense_Mutation p.R726C 0.36 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-HU-A4GT-01 10 890939 890939 T - LARP4B Frame_Shift_Del p.T163Hfs*47 0.25 TCGA-HU-A4GT-01 10 89717770 89717770 A - PTEN Frame_Shift_Del p.K267Rfs*9 0.32 TCGA-HU-A4GT-01 10 90682146 90682146 A - STAMBPL1 Frame_Shift_Del p.K405Rfs*21 0.54 TCGA-HU-A4GT-01 10 91178053 91178053 G A IFIT5 Missense_Mutation p.R366H 0.34 tolerated(0.22) benign(0.001) TCGA-HU-A4GT-01 10 94234611 94234613 TTT - IDE In_Frame_Del p.K701del 0.23 TCGA-HU-A4GT-01 10 94294479 94294479 A - IDE Frame_Shift_Del p.L116Wfs*43 0.33 TCGA-HU-A4GT-01 10 95109628 95109628 C T MYOF Silent p.S1340S 0.41 TCGA-HU-A4GT-01 11 10524275 10524275 T C AMPD3 Missense_Mutation p.V626A 0.06 tolerated(0.06) probably_damaging(1) TCGA-HU-A4GT-01 11 10536575 10536575 T C RNF141 Missense_Mutation p.Q194R 0.28 tolerated(0.34) benign(0.11) TCGA-HU-A4GT-01 11 107299981 107299981 T - CWF19L2 Frame_Shift_Del p.N326Ifs*19 0.30 TCGA-HU-A4GT-01 11 108114817 108114817 T - ATM Frame_Shift_Del p.S214Pfs*16 0.54 TCGA-HU-A4GT-01 11 108544239 108544239 A - DDX10 Frame_Shift_Del p.T80Hfs*2 0.16 TCGA-HU-A4GT-01 11 111631733 111631733 G A PPP2R1B Missense_Mutation p.R117C 0.24 deleterious(0) probably_damaging(1) TCGA-HU-A4GT-01 11 113853935 113853935 C A HTR3A Silent p.A162A 0.23 TCGA-HU-A4GT-01 11 114453198 114453198 T C NXPE4 Silent p.Q214Q 0.41 TCGA-HU-A4GT-01 11 115047097 115047097 A - CADM1 3'UTR 0.15 TCGA-HU-A4GT-01 11 116706800 116706800 C T APOA1 Silent p.A176A 0.10 TCGA-HU-A4GT-01 11 117307927 117307927 G A DSCAML1 Missense_Mutation p.A1604V 0.27 deleterious(0) probably_damaging(0.925) TCGA-HU-A4GT-01 11 118047235 118047235 A - SCN2B 5'UTR 0.34 TCGA-HU-A4GT-01 11 118454013 118454013 G A ARCN1 Silent p.Q129Q 0.12 TCGA-HU-A4GT-01 11 118498911 118498911 C - PHLDB1 Frame_Shift_Del p.L460* 0.28 TCGA-HU-A4GT-01 11 118769978 118769978 A G BCL9L Missense_Mutation p.C1216R 0.31 probably_damaging(0.957) TCGA-HU-A4GT-01 11 120337927 120337927 C A ARHGEF12 Missense_Mutation p.R922S 0.32 deleterious(0) probably_damaging(0.995) TCGA-HU-A4GT-01 11 12281474 12281474 C A MICAL2 Intron 0.47 TCGA-HU-A4GT-01 11 122930046 122930046 C A HSPA8 Intron 0.45 TCGA-HU-A4GT-01 11 123814132 123814132 G A OR6T1 Silent p.G138G 0.36 TCGA-HU-A4GT-01 11 1250965 1250965 G T MUC5B Missense_Mutation p.G383V 0.29 unknown(0) TCGA-HU-A4GT-01 11 125475553 125475553 T C STT3A Missense_Mutation p.Y180H 0.20 deleterious(0) probably_damaging(0.997) TCGA-HU-A4GT-01 11 125830813 125830813 A T CDON 3'UTR 0.41 TCGA-HU-A4GT-01 11 128774403 128774403 G A C11orf45 Missense_Mutation p.T20M 0.29 deleterious_low_confidence(0) possibly_damaging(0.897) TCGA-HU-A4GT-01 11 128781633 128781633 A G KCNJ5 Silent p.R155R 0.27 TCGA-HU-A4GT-01 11 130341187 130341187 C T ADAMTS15 Silent p.L663L 0.21 TCGA-HU-A4GT-01 11 14496077 14496077 G A COPB1 Silent p.R567R 0.23 TCGA-HU-A4GT-01 11 1471011 1471011 G A BRSK2 Missense_Mutation p.R457Q 0.46 deleterious(0.03) probably_damaging(0.976) TCGA-HU-A4GT-01 11 17464410 17464410 A G ABCC8 Missense_Mutation p.L496P 0.34 deleterious(0) possibly_damaging(0.861) TCGA-HU-A4GT-01 11 17793944 17793944 A G KCNC1 Missense_Mutation p.I435V 0.44 deleterious(0) probably_damaging(0.997) TCGA-HU-A4GT-01 11 20066984 20066984 G T NAV2 Missense_Mutation p.G1247C 0.28 deleterious(0) benign(0.077) TCGA-HU-A4GT-01 11 20113820 20113820 C T NAV2 Silent p.S1966S 0.17 TCGA-HU-A4GT-01 11 31812317 31812317 G - PAX6 Frame_Shift_Del p.P389Hfs*7 0.30 TCGA-HU-A4GT-01 11 33565884 33565884 T C KIAA1549L Splice_Site p.X628_splice 0.36 TCGA-HU-A4GT-01 11 36597722 36597723 - G RAG1 Frame_Shift_Ins p.A958Gfs*5 0.26 TCGA-HU-A4GT-01 11 46717659 46717659 G A ARHGAP1 5'UTR 0.25 TCGA-HU-A4GT-01 11 46747567 46747567 G T F2 Missense_Mutation p.A240S 0.17 tolerated(0.65) benign(0.005) TCGA-HU-A4GT-01 11 47612277 47612277 C T C1QTNF4 Missense_Mutation p.R29H 0.18 deleterious(0.04) benign(0.005) TCGA-HU-A4GT-01 11 486958 486958 A C PTDSS2 Missense_Mutation p.Q152P 0.25 tolerated(0.06) possibly_damaging(0.904) TCGA-HU-A4GT-01 11 55579770 55579770 G T OR5L1 Silent p.V276V 0.32 TCGA-HU-A4GT-01 11 55703317 55703317 A G OR5I1 Missense_Mutation p.L187P 0.45 deleterious(0.01) benign(0.028) TCGA-HU-A4GT-01 11 562253 562253 G A RASSF7 Missense_Mutation p.C100Y 0.37 deleterious(0.03) probably_damaging(0.961) TCGA-HU-A4GT-01 11 56237709 56237709 T - OR5M3 Frame_Shift_Del p.T89Qfs*8 0.15 TCGA-HU-A4GT-01 11 56757091 56757091 A - OR5AK2 Frame_Shift_Del p.K236Nfs*10 0.22 TCGA-HU-A4GT-01 11 57146221 57146221 C T PRG3 Missense_Mutation p.R147H 0.32 tolerated(0.52) benign(0.042) TCGA-HU-A4GT-01 11 58343319 58343319 G A LPXN Intron 0.37 TCGA-HU-A4GT-01 11 59345799 59345799 G A OSBP Missense_Mutation p.T628M 0.43 deleterious(0) probably_damaging(0.97) TCGA-HU-A4GT-01 11 59425190 59425190 G T PATL1 Missense_Mutation p.P145H 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-HU-A4GT-01 11 6048455 6048455 C T OR56A1 Silent p.A160A 0.29 TCGA-HU-A4GT-01 11 61099040 61099040 G A DDB1 Missense_Mutation p.A62V 0.44 deleterious(0.01) benign(0.029) TCGA-HU-A4GT-01 11 61511766 61511766 C A DAGLA Silent p.G978G 0.28 TCGA-HU-A4GT-01 11 61596030 61596030 C G FADS2 Silent p.G56G 0.31 TCGA-HU-A4GT-01 11 61643464 61643464 G A FADS3 Intron 0.37 TCGA-HU-A4GT-01 11 62189743 62189743 A G SCGB1A1 Missense_Mutation p.M36V 0.23 tolerated(1) benign(0.006) TCGA-HU-A4GT-01 11 6221292 6221292 T A OR52W1 Missense_Mutation p.I280N 0.06 deleterious(0) probably_damaging(0.93) TCGA-HU-A4GT-01 11 63313655 63313655 C T RARRES3 Missense_Mutation p.T141M 0.33 tolerated(0.27) benign(0.001) TCGA-HU-A4GT-01 11 63672263 63672263 C - MARK2 Frame_Shift_Del p.Q563Sfs*53 0.32 TCGA-HU-A4GT-01 11 63987799 63987802 GTGA - FERMT3 Splice_Site p.X441_splice 0.38 TCGA-HU-A4GT-01 11 64566945 64566945 T G MAP4K2 Missense_Mutation p.Q334P 0.18 tolerated(0.08) benign(0.36) TCGA-HU-A4GT-01 11 64572092 64572093 - G MEN1 Frame_Shift_Ins p.R521Pfs*15 0.16 TCGA-HU-A4GT-01 11 64591974 64591974 G - CDC42BPG Frame_Shift_Del p.L1543Yfs*14 0.16 TCGA-HU-A4GT-01 11 64695592 64695592 G A PPP2R5B Missense_Mutation p.V185M 0.34 deleterious(0.04) benign(0.027) TCGA-HU-A4GT-01 11 64876749 64876749 C T VPS51 Intron 0.36 TCGA-HU-A4GT-01 11 65272357 65272357 A G MALAT1 RNA 0.28 TCGA-HU-A4GT-01 11 65349561 65349561 A G EHBP1L1 Missense_Mutation p.E473G 0.22 deleterious(0.02) benign(0.408) TCGA-HU-A4GT-01 11 65780932 65780932 G A CST6 3'UTR 0.20 TCGA-HU-A4GT-01 11 65784571 65784571 T G CATSPER1 Missense_Mutation p.Q759P 0.29 deleterious(0.01) probably_damaging(0.972) TCGA-HU-A4GT-01 11 66061945 66061945 C T TMEM151A Silent p.A76A 0.44 TCGA-HU-A4GT-01 11 66061972 66061972 G A TMEM151A Silent p.P85P 0.55 TCGA-HU-A4GT-01 11 6630018 6630018 G A ILK Missense_Mutation p.R149Q 0.47 tolerated(0.58) benign(0.001) TCGA-HU-A4GT-01 11 6645397 6645397 G - DCHS1 Frame_Shift_Del p.L2504Wfs*57 0.27 TCGA-HU-A4GT-01 11 66605851 66605851 A - C11orf80 Frame_Shift_Del p.K563Rfs*19 0.17 TCGA-HU-A4GT-01 11 67166078 67166078 C T PPP1CA Silent p.G318G 0.07 TCGA-HU-A4GT-01 11 6913395 6913395 C T OR2D2 Missense_Mutation p.A113T 0.09 tolerated(0.44) benign(0.016) TCGA-HU-A4GT-01 11 70332338 70332338 C T SHANK2 Missense_Mutation p.E1355K 0.33 tolerated(0.27) benign(0.305) TCGA-HU-A4GT-01 11 7092507 7092509 GAA - NLRP14 In_Frame_Del p.E1085del 0.31 TCGA-HU-A4GT-01 11 71150032 71150032 G A DHCR7 Missense_Mutation p.R242C 0.31 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GT-01 11 71948719 71948719 C T INPPL1 Missense_Mutation p.A1144V 0.61 tolerated(0.39) benign(0) TCGA-HU-A4GT-01 11 72466074 72466074 C T STARD10 Silent p.A248A 0.29 TCGA-HU-A4GT-01 11 72469592 72469592 A G STARD10 Missense_Mutation p.Y148H 0.42 tolerated(0.43) benign(0.127) TCGA-HU-A4GT-01 11 73106249 73106249 C - RELT Frame_Shift_Del p.P390Lfs*7 0.37 TCGA-HU-A4GT-01 11 73681206 73681206 C T DNAJB13 3'UTR 0.38 TCGA-HU-A4GT-01 11 85961425 85961426 - G EED Frame_Shift_Ins p.W73Mfs*15 0.10 TCGA-HU-A4GT-01 11 88242557 88242557 C T GRM5 Missense_Mutation p.V948I 0.20 tolerated_low_confidence(0.2) benign(0.041) TCGA-HU-A4GT-01 11 92899120 92899120 A - SLC36A4 Frame_Shift_Del p.F277Lfs*11 0.29 TCGA-HU-A4GT-01 11 94731056 94731056 G T KDM4D Missense_Mutation p.G174C 0.08 deleterious(0) probably_damaging(1) TCGA-HU-A4GT-01 11 95591764 95591764 A G MTMR2 Silent p.P167P 0.16 TCGA-HU-A4GT-01 11 95826235 95826235 G A MAML2 Silent p.P320P 0.46 TCGA-HU-A4GT-01 12 100928723 100928723 G A NR1H4 Silent p.Q228Q 0.54 TCGA-HU-A4GT-01 12 101736730 101736730 C T UTP20 Silent p.F1436F 0.40 TCGA-HU-A4GT-01 12 104480794 104480794 T C HCFC2 Splice_Site p.X411_splice 0.54 TCGA-HU-A4GT-01 12 108913186 108913186 G A FICD Silent p.S437S 0.14 TCGA-HU-A4GT-01 12 109526001 109526001 A - ALKBH2 3'Flank 0.16 TCGA-HU-A4GT-01 12 109702080 109702080 C T ACACB Silent p.G2277G 0.26 TCGA-HU-A4GT-01 12 110929775 110929775 A - VPS29 3'UTR 0.27 TCGA-HU-A4GT-01 12 111336860 111336860 G A CCDC63 Missense_Mutation p.A425T 0.89 tolerated(0.37) benign(0.213) TCGA-HU-A4GT-01 12 11184006 11184006 G A TAS2R31 5'UTR 0.57 TCGA-HU-A4GT-01 12 112578723 112578723 C T TRAFD1 Missense_Mutation p.T113M 0.81 deleterious(0) probably_damaging(0.983) TCGA-HU-A4GT-01 12 112690240 112690240 T C HECTD4 Silent p.T1034T 0.18 TCGA-HU-A4GT-01 12 113704017 113704017 C - TPCN1 Frame_Shift_Del p.K164Rfs*19 0.18 TCGA-HU-A4GT-01 12 116453016 116453016 G A MED13L Missense_Mutation p.T358M 0.83 deleterious(0.01) unknown(0) TCGA-HU-A4GT-01 12 119617377 119617377 C - HSPB8 Frame_Shift_Del p.P89Hfs*12 0.48 TCGA-HU-A4GT-01 12 121879010 121879010 C T KDM2B Missense_Mutation p.R1104H 0.19 tolerated(0.32) benign(0.007) TCGA-HU-A4GT-01 12 122018879 122018879 G A KDM2B 5'UTR 0.94 TCGA-HU-A4GT-01 12 122396951 122396951 G A WDR66 Missense_Mutation p.S695N 0.40 tolerated(0.16) benign(0.071) TCGA-HU-A4GT-01 12 123471070 123471070 G A PITPNM2 Silent p.D1213D 0.19 TCGA-HU-A4GT-01 12 124414281 124414281 G A DNAH10 Missense_Mutation p.G4078D 0.16 benign(0.019) TCGA-HU-A4GT-01 12 12618642 12618642 A C LOH12CR1 Missense_Mutation p.S175R 0.44 tolerated(0.23) benign(0.011) TCGA-HU-A4GT-01 12 132551914 132551914 C A EP400 Silent p.T2919T 0.14 TCGA-HU-A4GT-01 12 132632470 132632470 G A NOC4L Missense_Mutation p.V217M 0.81 tolerated(0.07) benign(0.133) TCGA-HU-A4GT-01 12 132633428 132633428 G A NOC4L Missense_Mutation p.A297T 0.23 deleterious(0) benign(0.347) TCGA-HU-A4GT-01 12 133249248 133249248 C - POLE Frame_Shift_Del p.V551Ffs*12 0.28 TCGA-HU-A4GT-01 12 133418085 133418085 A - CHFR 3'UTR 0.18 TCGA-HU-A4GT-01 12 14952595 14952595 C T WBP11 Missense_Mutation p.R55Q 0.25 tolerated(0.32) unknown(0) TCGA-HU-A4GT-01 12 176577 176577 A G IQSEC3 Missense_Mutation p.K177E 0.16 deleterious(0.04) possibly_damaging(0.837) TCGA-HU-A4GT-01 12 1987496 1987496 G A CACNA2D4 Silent p.P568P 0.25 TCGA-HU-A4GT-01 12 2786947 2786947 A G CACNA1C Missense_Mutation p.I1717V 0.15 deleterious(0.01) benign(0.095) TCGA-HU-A4GT-01 12 30881656 30881656 A G CAPRIN2 Missense_Mutation p.W570R 0.14 deleterious(0.01) probably_damaging(1) TCGA-HU-A4GT-01 12 31819052 31819052 G T METTL20 Nonsense_Mutation p.G116* 0.20 TCGA-HU-A4GT-01 12 32480462 32480463 - G BICD1 Frame_Shift_Ins p.A360Gfs*7 0.31 TCGA-HU-A4GT-01 12 32945632 32945632 G A PKP2 Silent p.S841S 0.52 TCGA-HU-A4GT-01 12 33030914 33030914 C T PKP2 Silent p.T300T 0.26 TCGA-HU-A4GT-01 12 3701471 3701471 G A PRMT8 Missense_Mutation p.E352K 0.29 deleterious(0.01) probably_damaging(0.942) TCGA-HU-A4GT-01 12 40153972 40153972 T - SLC2A13 Frame_Shift_Del p.K601Nfs*2 0.09 TCGA-HU-A4GT-01 12 46598325 46598325 A - SLC38A1 Frame_Shift_Del p.F232Sfs*2 0.20 TCGA-HU-A4GT-01 12 48578233 48578233 A G C12orf68 Missense_Mutation p.S110G 0.43 tolerated_low_confidence(0.59) benign(0) TCGA-HU-A4GT-01 12 49170050 49170050 G T ADCY6 Missense_Mutation p.A540E 0.28 deleterious(0.01) probably_damaging(0.993) TCGA-HU-A4GT-01 12 49312165 49312165 T C CCDC65 Silent p.D239D 0.07 TCGA-HU-A4GT-01 12 49426313 49426313 C T KMT2D Missense_Mutation p.A4059T 0.30 unknown(0) TCGA-HU-A4GT-01 12 49883337 49883337 A G SPATS2 Silent p.T65T 0.18 TCGA-HU-A4GT-01 12 49993393 49993393 C T FAM186B Missense_Mutation p.S677N 0.51 tolerated(0.63) benign(0.033) TCGA-HU-A4GT-01 12 5020592 5020592 G A KCNA1 Silent p.P16P 0.55 TCGA-HU-A4GT-01 12 5021140 5021140 C T KCNA1 Missense_Mutation p.T199M 0.12 tolerated(0.15) benign(0.007) TCGA-HU-A4GT-01 12 5021284 5021284 C T KCNA1 Missense_Mutation p.T247M 0.55 tolerated(0.33) possibly_damaging(0.623) TCGA-HU-A4GT-01 12 51442948 51442948 T C LETMD1 Missense_Mutation p.L85P 0.27 deleterious(0.01) benign(0.171) TCGA-HU-A4GT-01 12 52285148 52285149 - C ANKRD33 3'UTR 0.61 TCGA-HU-A4GT-01 12 53346481 53346481 A G KRT18 Intron 0.20 TCGA-HU-A4GT-01 12 54426994 54426994 G A HOXC5 Missense_Mutation p.A30T 0.52 tolerated(0.45) benign(0.001) TCGA-HU-A4GT-01 12 54448771 54448771 C T HOXC4 Silent p.L193L 0.29 TCGA-HU-A4GT-01 12 54893228 54893228 C T NCKAP1L Silent p.N64N 0.24 TCGA-HU-A4GT-01 12 54971306 54971306 C T PPP1R1A 3'Flank 0.34 TCGA-HU-A4GT-01 12 55795200 55795200 A G OR6C65 Silent p.K296K 0.25 TCGA-HU-A4GT-01 12 56384490 56384490 T C RAB5B Missense_Mutation p.W114R 0.08 deleterious(0) probably_damaging(1) TCGA-HU-A4GT-01 12 56428548 56428548 T C IKZF4 Silent p.P397P 0.21 TCGA-HU-A4GT-01 12 56722284 56722284 G A PAN2 Missense_Mutation p.R142C 0.27 deleterious(0) probably_damaging(0.987) TCGA-HU-A4GT-01 12 56845068 56845068 A C MIP Missense_Mutation p.L263R 0.09 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-HU-A4GT-01 12 56848194 56848194 A C MIP Missense_Mutation p.N68K 0.45 deleterious(0.02) probably_damaging(1) TCGA-HU-A4GT-01 12 57588316 57588316 T A LRP1 Intron 0.20 TCGA-HU-A4GT-01 12 58001073 58001073 C - DTX3 Frame_Shift_Del p.L145Cfs*51 0.30 TCGA-HU-A4GT-01 12 58163382 58163383 - G METTL1 Frame_Shift_Ins p.L180Pfs*39 0.18 TCGA-HU-A4GT-01 12 6101113 6101113 C T VWF Missense_Mutation p.V2224M 0.11 tolerated(0.12) benign(0.176) TCGA-HU-A4GT-01 12 62785090 62785090 C T USP15 Missense_Mutation p.T705M 0.43 tolerated(0.11) benign(0.006) TCGA-HU-A4GT-01 12 62954329 62954330 - A MON2 Frame_Shift_Ins p.N1158Kfs*3 0.10 TCGA-HU-A4GT-01 12 64813965 64813965 C T XPOT Missense_Mutation p.T202M 0.16 deleterious(0.02) possibly_damaging(0.877) TCGA-HU-A4GT-01 12 64819119 64819119 T C XPOT Missense_Mutation p.L485P 0.46 deleterious(0) probably_damaging(0.979) TCGA-HU-A4GT-01 12 65633992 65633992 C T LEMD3 Silent p.R700R 0.10 TCGA-HU-A4GT-01 12 6701093 6701093 C T CHD4 Missense_Mutation p.V1027M 0.28 deleterious(0.05) benign(0.007) TCGA-HU-A4GT-01 12 68050922 68050922 C T DYRK2 Missense_Mutation p.H79Y 0.47 tolerated_low_confidence(1) benign(0.055) TCGA-HU-A4GT-01 12 69107564 69107564 T C NUP107 Silent p.S315S 0.17 TCGA-HU-A4GT-01 12 6924043 6924043 G - CD4 Frame_Shift_Del p.K167Rfs*31 0.28 TCGA-HU-A4GT-01 12 6946910 6946910 C T LEPREL2 Missense_Mutation p.R575C 0.13 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GT-01 12 6970756 6970756 C A USP5 Missense_Mutation p.L550M 0.19 deleterious(0.01) possibly_damaging(0.905) TCGA-HU-A4GT-01 12 70150428 70150428 C T RAB3IP Silent p.L181L 0.32 TCGA-HU-A4GT-01 12 7024905 7024905 C A ENO2 5'UTR 0.35 TCGA-HU-A4GT-01 12 72680485 72680485 G A TRHDE Silent p.S268S 0.38 TCGA-HU-A4GT-01 12 75601576 75601576 G A KCNC2 Missense_Mutation p.P63L 0.58 tolerated_low_confidence(0.3) possibly_damaging(0.898) TCGA-HU-A4GT-01 12 7805268 7805269 - T APOBEC1 Frame_Shift_Ins p.F70Ifs*32 0.22 TCGA-HU-A4GT-01 12 78542637 78542637 C T NAV3 Missense_Mutation p.R1575W 0.21 deleterious(0) probably_damaging(1) TCGA-HU-A4GT-01 12 82871071 82871071 A G METTL25 Silent p.V553V 0.19 TCGA-HU-A4GT-01 12 85441050 85441050 C T LRRIQ1 Silent p.Y160Y 0.47 TCGA-HU-A4GT-01 12 85695103 85695105 CAA - ALX1 In_Frame_Del p.N279del 0.15 TCGA-HU-A4GT-01 12 86373330 86373330 T - MGAT4C Frame_Shift_Del p.I392Lfs*3 0.50 TCGA-HU-A4GT-01 12 86373627 86373627 G A MGAT4C Missense_Mutation p.R293C 0.41 deleterious(0.01) probably_damaging(0.998) TCGA-HU-A4GT-01 12 8666271 8666271 A - CLEC4D 5'UTR 0.51 TCGA-HU-A4GT-01 12 8693423 8693423 C T CLEC4E 5'UTR 0.21 TCGA-HU-A4GT-01 12 88453675 88453675 T - CEP290 Frame_Shift_Del p.E2216Kfs*10 0.43 TCGA-HU-A4GT-01 12 88478553 88478553 A G CEP290 Missense_Mutation p.L1505P 0.32 probably_damaging(1) TCGA-HU-A4GT-01 12 8998751 8998751 T - A2ML1 Frame_Shift_Del p.S542Vfs*5 0.32 TCGA-HU-A4GT-01 12 9142307 9142308 - A KLRG1 Frame_Shift_Ins p.S28Ifs*47 0.16 TCGA-HU-A4GT-01 12 94975970 94975970 T G TMCC3 Missense_Mutation p.R141S 0.20 deleterious(0) possibly_damaging(0.472) TCGA-HU-A4GT-01 12 95887859 95887859 T C METAP2 Silent p.S152S 0.61 TCGA-HU-A4GT-01 12 96292432 96292432 T - CCDC38 Frame_Shift_Del p.A150Qfs*24 0.39 TCGA-HU-A4GT-01 12 9907761 9907761 T C CD69 Missense_Mutation p.K95R 0.20 deleterious(0.01) probably_damaging(0.951) TCGA-HU-A4GT-01 13 100925452 100925452 T - PCCA Frame_Shift_Del p.L308Wfs*14 0.29 TCGA-HU-A4GT-01 13 101707609 101707609 G A NALCN 3'UTR 0.10 TCGA-HU-A4GT-01 13 101755523 101755524 - A NALCN Frame_Shift_Ins p.L1019Ffs*30 0.41 TCGA-HU-A4GT-01 13 102105191 102105191 C - ITGBL1 Frame_Shift_Del p.P4Qfs*29 0.16 TCGA-HU-A4GT-01 13 111099207 111099207 A - COL4A2 Frame_Shift_Del p.G360Vfs*93 0.08 TCGA-HU-A4GT-01 13 111299480 111299480 G A CARS2 Silent p.C387C 0.43 TCGA-HU-A4GT-01 13 112722252 112722252 G A SOX1 Missense_Mutation p.E94K 0.23 deleterious(0.01) possibly_damaging(0.901) TCGA-HU-A4GT-01 13 113512204 113512204 A G ATP11A Missense_Mutation p.S831G 0.51 deleterious(0.03) possibly_damaging(0.859) TCGA-HU-A4GT-01 13 113699656 113699656 C T MCF2L Missense_Mutation p.A117V 0.09 deleterious(0.03) possibly_damaging(0.726) TCGA-HU-A4GT-01 13 114098772 114098772 A C ADPRHL1 Missense_Mutation p.L116R 0.17 tolerated(0.52) probably_damaging(0.996) TCGA-HU-A4GT-01 13 114294635 114294636 TT - TFDP1 3'UTR 0.36 TCGA-HU-A4GT-01 13 114538672 114538672 C T GAS6 Intron 0.11 TCGA-HU-A4GT-01 13 19753647 19753647 G A TUBA3C Silent p.C20C 0.49 TCGA-HU-A4GT-01 13 20608520 20608520 G A ZMYM2 Missense_Mutation p.V699I 0.57 tolerated(0.32) benign(0.003) TCGA-HU-A4GT-01 13 25671157 25671157 C T PABPC3 Missense_Mutation p.T274M 0.29 tolerated(0.14) benign(0.056) TCGA-HU-A4GT-01 13 27333504 27333504 A G GPR12 Missense_Mutation p.V154A 0.52 tolerated(0.26) benign(0.029) TCGA-HU-A4GT-01 13 27829237 27829237 C T RPL21 Intron 0.53 TCGA-HU-A4GT-01 13 31850906 31850906 G A B3GALTL Missense_Mutation p.R283K 0.29 deleterious(0) probably_damaging(1) TCGA-HU-A4GT-01 13 32972674 32972674 G A BRCA2 Missense_Mutation p.E3342K 0.30 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GT-01 13 36125103 36125104 - A NBEA Frame_Shift_Ins p.V2250Sfs*4 0.45 TCGA-HU-A4GT-01 13 36909285 36909285 A G SPG20 Missense_Mutation p.V228A 0.54 deleterious(0) probably_damaging(0.961) TCGA-HU-A4GT-01 13 39261662 39261662 G A FREM2 Missense_Mutation p.A61T 0.17 tolerated_low_confidence(0.54) benign(0.012) TCGA-HU-A4GT-01 13 42465631 42465631 C T VWA8 Silent p.L192L 0.49 TCGA-HU-A4GT-01 13 42734149 42734149 C T DGKH Silent p.V244V 0.55 TCGA-HU-A4GT-01 13 42773797 42773797 A G DGKH Missense_Mutation p.H794R 0.27 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GT-01 13 42874358 42874358 A - AKAP11 Frame_Shift_Del p.S494Afs*7 0.09 TCGA-HU-A4GT-01 13 46543660 46543661 - T ZC3H13 Frame_Shift_Ins p.R1007Tfs*2 0.30 TCGA-HU-A4GT-01 13 50140831 50140831 T - RCBTB1 Frame_Shift_Del p.K67Sfs*2 0.31 TCGA-HU-A4GT-01 13 51825756 51825756 C T FAM124A Missense_Mutation p.R121W 0.11 deleterious(0.01) probably_damaging(0.996) TCGA-HU-A4GT-01 13 52864009 52864009 C T RP11-248G5.8 RNA 0.18 TCGA-HU-A4GT-01 13 53420246 53420246 G A PCDH8 Missense_Mutation p.R776C 0.35 deleterious(0) probably_damaging(0.983) TCGA-HU-A4GT-01 13 53420426 53420426 G A PCDH8 Missense_Mutation p.R716C 0.30 tolerated(0.06) possibly_damaging(0.608) TCGA-HU-A4GT-01 13 53624925 53624925 T C OLFM4 3'UTR 0.24 TCGA-HU-A4GT-01 13 58208859 58208859 G A PCDH17 Missense_Mutation p.A727T 0.47 deleterious(0.02) possibly_damaging(0.79) TCGA-HU-A4GT-01 13 58298855 58298855 C A PCDH17 Nonsense_Mutation p.Y969* 0.61 TCGA-HU-A4GT-01 13 61102847 61102848 - A TDRD3 Frame_Shift_Ins p.R499Kfs*3 0.11 TCGA-HU-A4GT-01 13 67802452 67802452 C T PCDH9 Missense_Mutation p.G41R 0.59 deleterious(0) probably_damaging(1) TCGA-HU-A4GT-01 13 70514320 70514320 G A KLHL1 Missense_Mutation p.A289V 0.38 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GT-01 13 76429412 76429412 C T LMO7 Intron 0.15 TCGA-HU-A4GT-01 13 77632491 77632491 G A MYCBP2 Silent p.C4359C 0.17 TCGA-HU-A4GT-01 13 77670602 77670602 C T MYCBP2 Missense_Mutation p.A3229T 0.22 possibly_damaging(0.763) TCGA-HU-A4GT-01 13 77725047 77725048 - T MYCBP2 Frame_Shift_Ins p.M2280Nfs*26 0.21 TCGA-HU-A4GT-01 13 97639850 97639850 A G OXGR1 Missense_Mutation p.I55T 0.42 deleterious(0.02) probably_damaging(0.996) TCGA-HU-A4GT-01 13 98828988 98828988 G A RNF113B Missense_Mutation p.S168F 0.35 tolerated(0.05) benign(0.013) TCGA-HU-A4GT-01 14 102028063 102028063 G A DIO3 Missense_Mutation p.R77Q 0.09 tolerated_low_confidence(0.26) benign(0.016) TCGA-HU-A4GT-01 14 102455091 102455091 C T DYNC1H1 Nonsense_Mutation p.Q924* 0.29 TCGA-HU-A4GT-01 14 102493762 102493762 C T DYNC1H1 Missense_Mutation p.R2977W 0.08 probably_damaging(0.998) TCGA-HU-A4GT-01 14 102676253 102676254 - T WDR20 3'UTR 0.24 TCGA-HU-A4GT-01 14 103447224 103447224 A - CDC42BPB Frame_Shift_Del p.F342Lfs*4 0.28 TCGA-HU-A4GT-01 14 104573661 104573661 T C ASPG Missense_Mutation p.L471P 0.38 deleterious(0) probably_damaging(0.995) TCGA-HU-A4GT-01 14 105613019 105613019 G A JAG2 Missense_Mutation p.T841M 0.15 deleterious(0) probably_damaging(1) TCGA-HU-A4GT-01 14 106967079 106967079 A G IGHV1-46 Silent p.S107S 0.45 TCGA-HU-A4GT-01 14 20502296 20502296 G A OR4K13 Silent p.L208L 0.43 TCGA-HU-A4GT-01 14 21829015 21829015 G A SUPT16H Silent p.A682A 0.42 TCGA-HU-A4GT-01 14 21896212 21896212 G A CHD8 Missense_Mutation p.R473C 0.36 deleterious(0) possibly_damaging(0.586) TCGA-HU-A4GT-01 14 23345494 23345494 T C LRP10 Missense_Mutation p.V446A 0.42 deleterious(0.01) benign(0.026) TCGA-HU-A4GT-01 14 23416875 23416875 G A HAUS4 Silent p.S258S 0.33 TCGA-HU-A4GT-01 14 23845070 23845070 G A IL25 Missense_Mutation p.R172Q 0.10 tolerated(0.07) probably_damaging(0.993) TCGA-HU-A4GT-01 14 24470245 24470245 C T DHRS4L2 Silent p.G161G 0.45 TCGA-HU-A4GT-01 14 24534900 24534900 G A LRRC16B Missense_Mutation p.G1156S 0.25 tolerated(0.15) unknown(0) TCGA-HU-A4GT-01 14 24572735 24572735 C T PCK2 Silent p.H495H 0.34 TCGA-HU-A4GT-01 14 24760809 24760809 G A DHRS1 Missense_Mutation p.A226V 0.06 deleterious(0) benign(0.271) TCGA-HU-A4GT-01 14 31354747 31354747 T A COCH Missense_Mutation p.V294D 0.18 deleterious(0) probably_damaging(0.936) TCGA-HU-A4GT-01 14 36003677 36003677 G A INSM2 Silent p.S73S 0.18 TCGA-HU-A4GT-01 14 47530771 47530771 T - MDGA2 Frame_Shift_Del p.G403Dfs*22 0.16 TCGA-HU-A4GT-01 14 50100341 50100341 G T DNAAF2 Silent p.A509A 0.45 TCGA-HU-A4GT-01 14 51224327 51224327 G A NIN Missense_Mutation p.R1141W 0.30 deleterious(0.01) possibly_damaging(0.471) TCGA-HU-A4GT-01 14 53513449 53513480 AAATCAGTTTTAGGCCATTCATGTCCTTCAAG TCAGTTTTAGGCCATTCATGTCCTTCA DDHD1 3'UTR 0.12 TCGA-HU-A4GT-01 14 55369080 55369080 G A GCH1 Missense_Mutation p.A101V 0.12 deleterious(0) probably_damaging(0.929) TCGA-HU-A4GT-01 14 55462349 55462349 G A WDHD1 Silent p.H375H 0.17 TCGA-HU-A4GT-01 14 55903630 55903630 T C TBPL2 Missense_Mutation p.E86G 0.44 tolerated_low_confidence(0.13) benign(0.001) TCGA-HU-A4GT-01 14 59112121 59112122 - A DACT1 Frame_Shift_Ins p.N262Kfs*4 0.23 TCGA-HU-A4GT-01 14 61190792 61190792 T - SIX4 Frame_Shift_Del p.M1? 0.27 TCGA-HU-A4GT-01 14 64989787 64989787 A - ZBTB1 Frame_Shift_Del p.K524Sfs*25 0.24 TCGA-HU-A4GT-01 14 65008759 65008759 G A HSPA2 Missense_Mutation p.D398N 0.19 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-HU-A4GT-01 14 65019530 65019530 A G PPP1R36 Splice_Site p.X45_splice 0.36 TCGA-HU-A4GT-01 14 65210188 65210188 C T PLEKHG3 Missense_Mutation p.R1087W 0.26 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GT-01 14 65494205 65494205 G T FNTB Nonsense_Mutation p.E137* 0.46 TCGA-HU-A4GT-01 14 68023986 68023986 G T PLEKHH1 Missense_Mutation p.V64L 0.29 tolerated(0.06) benign(0.031) TCGA-HU-A4GT-01 14 73959333 73959333 G A HEATR4 Intron 0.11 TCGA-HU-A4GT-01 14 74203799 74203799 C T ELMSAN1 Missense_Mutation p.G551R 0.49 tolerated(0.07) benign(0.052) TCGA-HU-A4GT-01 14 74205773 74205773 G - ELMSAN1 Frame_Shift_Del p.N314Tfs*4 0.33 TCGA-HU-A4GT-01 14 74438596 74438596 C - ENTPD5 Frame_Shift_Del p.G348Vfs*3 0.28 TCGA-HU-A4GT-01 14 75230471 75230471 G - YLPM1 Frame_Shift_Del p.G95Afs*124 0.25 TCGA-HU-A4GT-01 14 75301989 75301989 G A YLPM1 Missense_Mutation p.E2106K 0.17 possibly_damaging(0.797) TCGA-HU-A4GT-01 14 75329843 75329843 C A PROX2 Missense_Mutation p.R232M 0.15 tolerated(0.1) possibly_damaging(0.893) TCGA-HU-A4GT-01 14 75413539 75413539 A G PGF Intron 0.46 TCGA-HU-A4GT-01 14 75936244 75936245 - G JDP2 3'UTR 0.47 TCGA-HU-A4GT-01 14 78203418 78203418 T C SNW1 Silent p.R178R 0.14 TCGA-HU-A4GT-01 14 79433613 79433613 G A NRXN3 Missense_Mutation p.R574H 0.36 tolerated(0.08) probably_damaging(0.951) TCGA-HU-A4GT-01 14 88652118 88652118 C T KCNK10 Missense_Mutation p.D465N 0.24 tolerated_low_confidence(0.05) possibly_damaging(0.848) TCGA-HU-A4GT-01 14 89307467 89307467 T G TTC8 Missense_Mutation p.I139S 0.33 deleterious(0.04) probably_damaging(0.964) TCGA-HU-A4GT-01 14 89878534 89878534 G - FOXN3 Frame_Shift_Del p.P96Hfs*42 0.31 TCGA-HU-A4GT-01 14 91369214 91369214 T C RPS6KA5 Missense_Mutation p.T353A 0.40 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GT-01 14 94914898 94914898 T C SERPINA11 Missense_Mutation p.N72D 0.05 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GT-01 14 95574665 95574665 G T DICER1 Missense_Mutation p.P811H 0.36 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GT-01 14 99697710 99697710 A C BCL11B Silent p.A204A 0.21 TCGA-HU-A4GT-01 15 102182721 102182721 A G TM2D3 Silent p.V235V 0.33 TCGA-HU-A4GT-01 15 22369163 22369163 G T OR4M2 Missense_Mutation p.E196D 0.36 tolerated(0.13) probably_damaging(0.946) TCGA-HU-A4GT-01 15 23810931 23810931 T C MKRN3 Translation_Start_Site p.M1? 0.35 deleterious(0) unknown(0) TCGA-HU-A4GT-01 15 25494417 25494417 G A SNORD115-43 RNA 0.38 TCGA-HU-A4GT-01 15 29406136 29406136 C T APBA2 Missense_Mutation p.R699C 0.48 deleterious(0) probably_damaging(1) TCGA-HU-A4GT-01 15 30018641 30018641 G A TJP1 Missense_Mutation p.A785V 0.30 deleterious(0.02) possibly_damaging(0.896) TCGA-HU-A4GT-01 15 31214442 31214442 C T FAN1 Missense_Mutation p.A686V 0.28 deleterious(0) possibly_damaging(0.735) TCGA-HU-A4GT-01 15 34040387 34040387 A G RYR3 Missense_Mutation p.R2688G 0.36 probably_damaging(0.995) TCGA-HU-A4GT-01 15 34158800 34158800 T - AVEN 3'UTR 0.28 TCGA-HU-A4GT-01 15 40629609 40629609 G A C15orf52 Missense_Mutation p.A285V 0.36 tolerated(0.12) benign(0.273) TCGA-HU-A4GT-01 15 41149029 41149029 C T SPINT1 Silent p.I482I 0.28 TCGA-HU-A4GT-01 15 42167711 42167711 C T SPTBN5 Missense_Mutation p.R1411H 0.41 benign(0.023) TCGA-HU-A4GT-01 15 42276068 42276069 - AA PLA2G4E Frame_Shift_Ins p.D831Lfs*5 0.30 TCGA-HU-A4GT-01 15 42703095 42703095 C T CAPN3 Silent p.N759N 0.34 TCGA-HU-A4GT-01 15 43028229 43028229 C T CDAN1 Missense_Mutation p.R206Q 0.32 deleterious(0.01) probably_damaging(0.964) TCGA-HU-A4GT-01 15 43552729 43552729 C T TGM5 Missense_Mutation p.R20Q 0.35 tolerated(0.56) benign(0.005) TCGA-HU-A4GT-01 15 43714075 43714075 G A TP53BP1 Nonsense_Mutation p.R1360* 0.29 TCGA-HU-A4GT-01 15 44849810 44849811 - T EIF3J Frame_Shift_Ins p.L180Ffs*15 0.28 TCGA-HU-A4GT-01 15 45047120 45047120 A G TRIM69 Missense_Mutation p.N10S 0.30 tolerated_low_confidence(0.18) benign(0.004) TCGA-HU-A4GT-01 15 45444669 45444669 G A DUOX1 Missense_Mutation p.V1127M 0.24 deleterious(0) possibly_damaging(0.804) TCGA-HU-A4GT-01 15 48413174 48413174 C T SLC24A5 5'UTR 0.26 TCGA-HU-A4GT-01 15 49447833 49447833 C T COPS2 5'UTR 0.32 TCGA-HU-A4GT-01 15 49935572 49935572 C T DTWD1 Missense_Mutation p.R238C 0.31 deleterious(0) probably_damaging(1) TCGA-HU-A4GT-01 15 50158588 50158588 T C ATP8B4 Missense_Mutation p.S1041G 0.36 deleterious(0) benign(0.01) TCGA-HU-A4GT-01 15 50901876 50901876 T G TRPM7 Missense_Mutation p.N828H 0.23 tolerated(0.44) benign(0.001) TCGA-HU-A4GT-01 15 52699556 52699556 A G MYO5A Silent p.S293S 0.30 TCGA-HU-A4GT-01 15 55912892 55912892 A - PRTG Frame_Shift_Del p.F1056Sfs*30 0.26 TCGA-HU-A4GT-01 15 60297413 60297413 G A FOXB1 Missense_Mutation p.G84D 0.15 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GT-01 15 62261496 62261496 A G VPS13C Splice_Site p.X971_splice 0.25 TCGA-HU-A4GT-01 15 62939540 62939540 C T TLN2 Missense_Mutation p.R11C 0.10 tolerated(0.05) possibly_damaging(0.608) TCGA-HU-A4GT-01 15 63031561 63031561 G A TLN2 Silent p.T1234T 0.27 TCGA-HU-A4GT-01 15 63618547 63618547 T - CA12 Frame_Shift_Del p.G335Vfs*108 0.16 TCGA-HU-A4GT-01 15 63904727 63904727 C T HERC1 Nonsense_Mutation p.W4708* 0.28 TCGA-HU-A4GT-01 15 63967043 63967043 G A HERC1 Silent p.D2448D 0.34 TCGA-HU-A4GT-01 15 64791864 64791864 A G ZNF609 Silent p.Q82Q 0.24 TCGA-HU-A4GT-01 15 64967247 64967247 A - ZNF609 Frame_Shift_Del p.K734Rfs*12 0.42 TCGA-HU-A4GT-01 15 64970558 64970559 - C ZNF609 Frame_Shift_Ins p.L1218Tfs*60 0.20 TCGA-HU-A4GT-01 15 65242166 65242166 G A ANKDD1A Missense_Mutation p.V486M 0.06 tolerated(0.09) benign(0.315) TCGA-HU-A4GT-01 15 65771349 65771350 - G DPP8 Frame_Shift_Ins p.Q458Pfs*8 0.21 TCGA-HU-A4GT-01 15 70959656 70959657 - T UACA Frame_Shift_Ins p.S1123Ifs*3 0.08 TCGA-HU-A4GT-01 15 71124946 71124946 G A LARP6 Silent p.D307D 0.08 TCGA-HU-A4GT-01 15 71256165 71256165 C T LRRC49 Missense_Mutation p.S277L 0.07 deleterious(0.03) benign(0.059) TCGA-HU-A4GT-01 15 72057442 72057442 C T THSD4 Silent p.D891D 0.29 TCGA-HU-A4GT-01 15 73470737 73470737 A T NEO1 Missense_Mutation p.Q420H 0.42 deleterious(0.02) probably_damaging(1) TCGA-HU-A4GT-01 15 73570470 73570470 A G NEO1 Splice_Site p.X1065_splice 0.21 TCGA-HU-A4GT-01 15 74363495 74363495 G - GOLGA6A Frame_Shift_Del p.Q642Rfs*15 0.12 TCGA-HU-A4GT-01 15 74425134 74425134 T G ISLR2 Silent p.L13L 0.41 TCGA-HU-A4GT-01 15 74473268 74473268 C T STRA6 Silent p.T604T 0.29 TCGA-HU-A4GT-01 15 74703166 74703166 G A SEMA7A Silent p.I600I 0.48 TCGA-HU-A4GT-01 15 75131045 75131045 G A ULK3 Silent p.I347I 0.40 TCGA-HU-A4GT-01 15 75146364 75146364 G - SCAMP2 Frame_Shift_Del p.Q75Rfs*36 0.25 TCGA-HU-A4GT-01 15 76254214 76254214 G A NRG4 Missense_Mutation p.A69V 0.07 tolerated(0.92) benign(0.024) TCGA-HU-A4GT-01 15 79063576 79063576 C T ADAMTS7 Missense_Mutation p.D816N 0.37 tolerated(1) benign(0.001) TCGA-HU-A4GT-01 15 79224792 79224792 G A CTSH Silent p.C138C 0.38 TCGA-HU-A4GT-01 15 79341903 79341903 G A RASGRF1 Missense_Mutation p.R187C 0.44 deleterious(0.04) benign(0.092) TCGA-HU-A4GT-01 15 80762578 80762578 G A ARNT2 Missense_Mutation p.E72K 0.47 deleterious(0) possibly_damaging(0.635) TCGA-HU-A4GT-01 15 81641861 81641861 A - TMC3 Frame_Shift_Del p.F377Lfs*7 0.27 TCGA-HU-A4GT-01 15 82575092 82575092 C T FAM154B Missense_Mutation p.R296C 0.40 deleterious(0.03) benign(0.336) TCGA-HU-A4GT-01 15 83826184 83826184 T C HDGFRP3 Missense_Mutation p.K148E 0.42 tolerated(0.23) possibly_damaging(0.811) TCGA-HU-A4GT-01 15 84553863 84553863 C T ADAMTSL3 Missense_Mutation p.T324I 0.21 tolerated(0.09) benign(0.007) TCGA-HU-A4GT-01 15 84652067 84652067 G T ADAMTSL3 Missense_Mutation p.K1229N 0.42 deleterious(0) probably_damaging(1) TCGA-HU-A4GT-01 15 88799238 88799238 G A NTRK3 Silent p.D49D 0.43 TCGA-HU-A4GT-01 15 89417219 89417219 G A ACAN Missense_Mutation p.G2494R 0.25 deleterious(0) probably_damaging(0.996) TCGA-HU-A4GT-01 15 90039776 90039776 G T RHCG 5'UTR 0.28 TCGA-HU-A4GT-01 15 90334189 90334189 A T ANPEP Missense_Mutation p.F888L 0.10 deleterious(0.04) benign(0.005) TCGA-HU-A4GT-01 15 92706441 92706441 A - SLCO3A1 3'UTR 0.29 TCGA-HU-A4GT-01 15 99251014 99251014 C A IGF1R Silent p.I106I 0.21 TCGA-HU-A4GT-01 16 11773401 11773401 G A TXNDC11 Missense_Mutation p.R843W 0.34 tolerated(0.1) benign(0.014) TCGA-HU-A4GT-01 16 12371842 12371842 G A SNX29 Silent p.P577P 0.35 TCGA-HU-A4GT-01 16 15835670 15835670 G A MYH11 Missense_Mutation p.R874W 0.36 benign(0.209) TCGA-HU-A4GT-01 16 16142119 16142120 - C ABCC1 Frame_Shift_Ins p.L449Pfs*124 0.31 TCGA-HU-A4GT-01 16 16263540 16263540 C T ABCC6 Silent p.L986L 0.33 TCGA-HU-A4GT-01 16 1828187 1828187 C - SPSB3 Frame_Shift_Del p.G147Afs*9 0.22 TCGA-HU-A4GT-01 16 19722724 19722724 T - KNOP1 Frame_Shift_Del p.G320Afs*8 0.40 TCGA-HU-A4GT-01 16 2024271 2024271 C T TBL3 Missense_Mutation p.A56V 0.22 tolerated(0.21) benign(0.066) TCGA-HU-A4GT-01 16 2050088 2050088 C T ZNF598 Missense_Mutation p.A488T 0.15 probably_damaging(0.999) TCGA-HU-A4GT-01 16 2052542 2052542 G A ZNF598 Silent p.D219D 0.49 TCGA-HU-A4GT-01 16 20871266 20871267 - C DCUN1D3 Frame_Shift_Ins p.E286Gfs*11 0.36 TCGA-HU-A4GT-01 16 2110688 2110688 C T TSC2 Silent p.N331N 0.25 TCGA-HU-A4GT-01 16 2161747 2161747 C T PKD1 Missense_Mutation p.G1141S 0.27 possibly_damaging(0.786) TCGA-HU-A4GT-01 16 22328529 22328529 T C POLR3E Splice_Site p.X289_splice 0.43 TCGA-HU-A4GT-01 16 22335726 22335726 G A POLR3E Missense_Mutation p.V374M 0.41 deleterious(0) benign(0.184) TCGA-HU-A4GT-01 16 2239534 2239534 C A CASKIN1 Missense_Mutation p.Q92H 0.42 probably_damaging(0.967) TCGA-HU-A4GT-01 16 22926383 22926383 G A HS3ST2 Missense_Mutation p.V202M 0.23 deleterious(0.01) probably_damaging(0.983) TCGA-HU-A4GT-01 16 2569560 2569560 C T ATP6V0C Silent p.G94G 0.18 TCGA-HU-A4GT-01 16 27500445 27500445 G A GTF3C1 Silent p.A1116A 0.41 TCGA-HU-A4GT-01 16 27629746 27629746 G T KIAA0556 Missense_Mutation p.G22C 0.10 tolerated(0.15) benign(0.244) TCGA-HU-A4GT-01 16 28846700 28846700 G A ATXN2L Missense_Mutation p.A889T 0.14 tolerated(0.25) benign(0.354) TCGA-HU-A4GT-01 16 28847355 28847356 - C ATXN2L Frame_Shift_Ins p.Q1002Pfs*29 0.26 TCGA-HU-A4GT-01 16 29818087 29818087 G - MAZ Frame_Shift_Del p.V24Wfs*5 0.29 TCGA-HU-A4GT-01 16 30124700 30124700 C T GDPD3 Missense_Mutation p.A34T 0.05 tolerated(0.28) benign(0.004) TCGA-HU-A4GT-01 16 3014884 3014884 A G KREMEN2 Missense_Mutation p.N40S 0.33 deleterious(0.01) probably_damaging(0.977) TCGA-HU-A4GT-01 16 3021678 3021678 G A PAQR4 Missense_Mutation p.R184H 0.27 deleterious(0.01) probably_damaging(0.996) TCGA-HU-A4GT-01 16 30518138 30518138 C - ITGAL Frame_Shift_Del p.P825Rfs*11 0.30 TCGA-HU-A4GT-01 16 3065512 3065512 A G CLDN6 Missense_Mutation p.S171P 0.24 deleterious(0) possibly_damaging(0.584) TCGA-HU-A4GT-01 16 30938952 30938952 G A FBXL19 Missense_Mutation p.R147H 0.62 deleterious(0) possibly_damaging(0.848) TCGA-HU-A4GT-01 16 30997840 30997840 A G HSD3B7 Missense_Mutation p.H140R 0.14 deleterious(0.02) benign(0.063) TCGA-HU-A4GT-01 16 3100442 3100442 G A MMP25 Missense_Mutation p.D186N 0.30 deleterious(0) probably_damaging(0.978) TCGA-HU-A4GT-01 16 31196405 31196405 C T FUS Silent p.G223G 0.38 TCGA-HU-A4GT-01 16 31236013 31236013 G A TRIM72 Nonsense_Mutation p.W457* 0.67 TCGA-HU-A4GT-01 16 31422077 31422077 C A ITGAD Missense_Mutation p.L412M 0.42 tolerated(0.06) benign(0.388) TCGA-HU-A4GT-01 16 3604310 3604310 C T NLRC3 Missense_Mutation p.V781I 0.50 tolerated(1) benign(0) TCGA-HU-A4GT-01 16 3640169 3640169 G A SLX4 Missense_Mutation p.S1157L 0.36 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GT-01 16 4504853 4504853 C T DNAJA3 Missense_Mutation p.R461C 0.45 deleterious(0.04) benign(0.208) TCGA-HU-A4GT-01 16 46695735 46695735 T - VPS35 Frame_Shift_Del p.A703Lfs*2 0.25 TCGA-HU-A4GT-01 16 48396331 48396331 A G SIAH1 Silent p.R34R 0.22 TCGA-HU-A4GT-01 16 4934378 4934378 C T PPL Silent p.R1426R 0.35 TCGA-HU-A4GT-01 16 50830430 50830430 C T CYLD 3'UTR 0.24 TCGA-HU-A4GT-01 16 5125455 5125455 G A ALG1 Missense_Mutation p.V153I 0.35 tolerated(1) benign(0.021) TCGA-HU-A4GT-01 16 55613034 55613034 A G LPCAT2 Missense_Mutation p.D443G 0.07 deleterious(0.05) possibly_damaging(0.788) TCGA-HU-A4GT-01 16 55690802 55690802 C A SLC6A2 Missense_Mutation p.L66M 0.37 deleterious(0) probably_damaging(1) TCGA-HU-A4GT-01 16 56553706 56553706 G T BBS2 Silent p.R23R 0.20 TCGA-HU-A4GT-01 16 56686928 56686928 A G MT1B Missense_Mutation p.Q46R 0.43 tolerated(0.08) unknown(0) TCGA-HU-A4GT-01 16 57800794 57800794 C A KIFC3 Missense_Mutation p.R441L 0.38 deleterious(0) possibly_damaging(0.614) TCGA-HU-A4GT-01 16 58314246 58314246 T C PRSS54 Missense_Mutation p.D357G 0.09 deleterious(0.01) probably_damaging(0.922) TCGA-HU-A4GT-01 16 66611099 66611100 - G CMTM1 Frame_Shift_Ins 0.25 TCGA-HU-A4GT-01 16 67179283 67179283 C T C16orf70 Silent p.N337N 0.59 TCGA-HU-A4GT-01 16 67199736 67199736 G A HSF4 Missense_Mutation p.R116H 0.33 tolerated(0.88) probably_damaging(0.991) TCGA-HU-A4GT-01 16 67233097 67233097 C T ELMO3 Silent p.R9R 0.42 TCGA-HU-A4GT-01 16 67290433 67290433 C T SLC9A5 Missense_Mutation p.R325C 0.46 tolerated(0.09) probably_damaging(0.977) TCGA-HU-A4GT-01 16 67645338 67645339 - AA CTCF Frame_Shift_Ins p.T204Kfs*19 0.36 TCGA-HU-A4GT-01 16 682653 682653 C G WFIKKN1 Silent p.P81P 0.50 TCGA-HU-A4GT-01 16 68380061 68380062 GA - PRMT7 Frame_Shift_Del p.R358Sfs*9 0.26 TCGA-HU-A4GT-01 16 69726329 69726329 A C NFAT5 Silent p.T867T 0.39 TCGA-HU-A4GT-01 16 70563046 70563046 G A SF3B3 Missense_Mutation p.R114H 0.18 deleterious(0) probably_damaging(1) TCGA-HU-A4GT-01 16 70599269 70599269 A G SF3B3 Splice_Site p.X890_splice 0.18 TCGA-HU-A4GT-01 16 71019097 71019097 C T HYDIN Silent p.L1441L 0.39 TCGA-HU-A4GT-01 16 72822585 72822586 - G ZFHX3 Frame_Shift_Ins p.Q3197Pfs*42 0.43 TCGA-HU-A4GT-01 16 74657772 74657772 C T RFWD3 3'UTR 0.38 TCGA-HU-A4GT-01 16 75512546 75512546 C T CHST6 Missense_Mutation p.R394Q 0.39 tolerated_low_confidence(0.3) benign(0) TCGA-HU-A4GT-01 16 80654800 80654800 G A CDYL2 Silent p.N289N 0.21 TCGA-HU-A4GT-01 16 83711897 83711897 G A CDH13 Missense_Mutation p.G504S 0.25 tolerated(0.73) probably_damaging(1) TCGA-HU-A4GT-01 16 84043399 84043399 T C SLC38A8 Missense_Mutation p.E433G 0.25 deleterious(0) possibly_damaging(0.848) TCGA-HU-A4GT-01 16 840648 840648 G A CHTF18 Silent p.T292T 0.30 TCGA-HU-A4GT-01 16 84213641 84213641 G T TAF1C Missense_Mutation p.P537H 0.32 tolerated(0.26) probably_damaging(0.999) TCGA-HU-A4GT-01 16 84328528 84328528 G - WFDC1 5'UTR 0.28 TCGA-HU-A4GT-01 16 848019 848019 T C CHTF18 3'UTR 0.22 TCGA-HU-A4GT-01 16 85953745 85953745 G A IRF8 Missense_Mutation p.R340Q 0.64 tolerated(0.35) probably_damaging(0.997) TCGA-HU-A4GT-01 16 88691140 88691141 - C ZC3H18 Frame_Shift_Ins p.R680Qfs*14 0.31 TCGA-HU-A4GT-01 16 88744962 88744962 G A SNAI3 Missense_Mutation p.T258M 0.38 deleterious(0) probably_damaging(0.981) TCGA-HU-A4GT-01 16 89349914 89349916 CTT - ANKRD11 In_Frame_Del p.K1012del 0.42 TCGA-HU-A4GT-01 16 89598458 89598458 C T SPG7 Silent p.F378F 0.28 TCGA-HU-A4GT-01 16 89936599 89936599 C T SPIRE2 Silent p.D688D 0.33 TCGA-HU-A4GT-01 16 90127015 90127015 G A PRDM7 Missense_Mutation p.R323W 0.33 deleterious(0.03) probably_damaging(0.993) TCGA-HU-A4GT-01 16 9857724 9857724 C T GRIN2A Missense_Mutation p.G1226D 0.24 deleterious(0) probably_damaging(0.991) TCGA-HU-A4GT-01 16 9862852 9862852 C A GRIN2A Missense_Mutation p.M817I 0.36 deleterious(0) probably_damaging(0.996) TCGA-HU-A4GT-01 17 10361045 10361045 G T MYH4 Missense_Mutation p.P530H 0.28 deleterious(0) probably_damaging(0.944) TCGA-HU-A4GT-01 17 1641023 1641023 G A WDR81 3'UTR 0.40 TCGA-HU-A4GT-01 17 17415878 17415878 G A PEMT Silent p.G137G 0.24 TCGA-HU-A4GT-01 17 18058637 18058637 G T MYO15A Missense_Mutation p.G2784C 0.23 unknown(0) TCGA-HU-A4GT-01 17 18389303 18389303 A G LGALS9C Missense_Mutation p.N63D 0.38 deleterious(0.02) probably_damaging(0.997) TCGA-HU-A4GT-01 17 18651270 18651270 C T FBXW10 Silent p.I174I 0.26 TCGA-HU-A4GT-01 17 18668078 18668078 T G FBXW10 Missense_Mutation p.V486G 0.08 deleterious(0.02) benign(0.04) TCGA-HU-A4GT-01 17 18922781 18922781 C T SLC5A10 Silent p.P445P 0.41 TCGA-HU-A4GT-01 17 19232950 19232950 A - EPN2 Frame_Shift_Del p.T470Qfs*5 0.40 TCGA-HU-A4GT-01 17 21318708 21318708 C T KCNJ12 Silent p.D18D 0.08 TCGA-HU-A4GT-01 17 26697215 26697215 G T VTN Missense_Mutation p.L4M 0.35 tolerated(0.23) unknown(0) TCGA-HU-A4GT-01 17 27005857 27005857 C T SUPT6H Missense_Mutation p.R409C 0.21 deleterious(0) probably_damaging(0.993) TCGA-HU-A4GT-01 17 27042294 27042294 C T RAB34 Silent p.K201K 0.28 TCGA-HU-A4GT-01 17 27493332 27493332 G - MYO18A Frame_Shift_Del p.V210Wfs*86 0.30 TCGA-HU-A4GT-01 17 27939969 27939969 G A ANKRD13B Missense_Mutation p.R547H 0.30 tolerated(0.13) benign(0.015) TCGA-HU-A4GT-01 17 28593903 28593903 C A BLMH Missense_Mutation p.G406C 0.43 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GT-01 17 28791794 28791794 G T CPD Missense_Mutation p.D1369Y 0.45 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-HU-A4GT-01 17 29233199 29233199 G T TEFM Silent p.L6L 0.26 TCGA-HU-A4GT-01 17 29497003 29497003 C T NF1 Nonsense_Mutation p.R192* 0.38 TCGA-HU-A4GT-01 17 29556375 29556375 G A NF1 Silent p.R914R 0.07 TCGA-HU-A4GT-01 17 29677285 29677285 A - NF1 Frame_Shift_Del p.N2470Mfs*19 0.23 TCGA-HU-A4GT-01 17 33998862 33998862 G A AP2B1 Silent p.L707L 0.39 TCGA-HU-A4GT-01 17 34173933 34173933 G A TAF15 Missense_Mutation p.R588H 0.25 deleterious_low_confidence(0) unknown(0) TCGA-HU-A4GT-01 17 35300395 35300395 C - LHX1 Frame_Shift_Del p.E399Kfs*2 0.28 TCGA-HU-A4GT-01 17 3627639 3627639 C T GSG2 Missense_Mutation p.P137L 0.32 deleterious_low_confidence(0.04) benign(0.066) TCGA-HU-A4GT-01 17 36365070 36365070 A G RP11-1407O15.2 Silent p.A175A 0.13 TCGA-HU-A4GT-01 17 37947731 37947731 T C IKZF3 Missense_Mutation p.H177R 0.10 tolerated(0.1) probably_damaging(0.999) TCGA-HU-A4GT-01 17 38249548 38249548 C T THRA Silent p.D462D 0.45 TCGA-HU-A4GT-01 17 38499018 38499018 A G RARA Intron 0.09 TCGA-HU-A4GT-01 17 39535728 39535728 G T KRT34 Silent p.T293T 0.27 TCGA-HU-A4GT-01 17 40842128 40842128 G T CNTNAP1 Missense_Mutation p.E586D 0.43 tolerated(0.19) benign(0.004) TCGA-HU-A4GT-01 17 42271658 42271658 C T ATXN7L3 Silent p.T346T 0.14 TCGA-HU-A4GT-01 17 42328569 42328569 G A SLC4A1 Silent p.R871R 0.48 TCGA-HU-A4GT-01 17 42399085 42399085 G A SLC25A39 Silent p.S125S 0.29 TCGA-HU-A4GT-01 17 43922605 43922605 G T SPPL2C Missense_Mutation p.Q111H 0.31 deleterious(0.01) probably_damaging(1) TCGA-HU-A4GT-01 17 44039781 44039781 G - MAPT Frame_Shift_Del p.G28Afs*16 0.31 TCGA-HU-A4GT-01 17 4536710 4536710 T C ALOX15 Missense_Mutation p.Q416R 0.35 tolerated(0.26) benign(0.035) TCGA-HU-A4GT-01 17 4544838 4544839 - C ALOX15 Frame_Shift_Ins p.K37Efs*36 0.12 TCGA-HU-A4GT-01 17 45734239 45734239 T C KPNB1 Missense_Mutation p.L99S 0.29 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GT-01 17 46608177 46608177 G T HOXB1 Silent p.S30S 0.17 TCGA-HU-A4GT-01 17 46620969 46620969 C T HOXB2 Missense_Mutation p.A178T 0.17 deleterious(0) probably_damaging(0.992) TCGA-HU-A4GT-01 17 48551125 48551125 C T ACSF2 Silent p.L525L 0.36 TCGA-HU-A4GT-01 17 4875738 4875738 G - CAMTA2 Frame_Shift_Del p.P889Lfs*9 0.37 TCGA-HU-A4GT-01 17 48917398 48917398 G A WFIKKN2 Missense_Mutation p.R250Q 0.17 tolerated(0.34) benign(0.253) TCGA-HU-A4GT-01 17 5281517 5281517 A - RABEP1 Frame_Shift_Del p.G756Dfs*7 0.35 TCGA-HU-A4GT-01 17 53798136 53798136 A - TMEM100 Frame_Shift_Del p.L99Yfs*2 0.26 TCGA-HU-A4GT-01 17 53851118 53851118 A G PCTP Missense_Mutation p.M125V 0.20 tolerated(1) benign(0) TCGA-HU-A4GT-01 17 54969106 54969106 C T TRIM25 Nonsense_Mutation p.W616* 0.23 TCGA-HU-A4GT-01 17 55195773 55195773 C A AKAP1 Silent p.A844A 0.11 TCGA-HU-A4GT-01 17 56272434 56272434 T C EPX Missense_Mutation p.L235P 0.41 deleterious(0) probably_damaging(0.991) TCGA-HU-A4GT-01 17 56435161 56435161 C - RNF43 Frame_Shift_Del p.G659Vfs*41 0.24 TCGA-HU-A4GT-01 17 58234015 58234017 CTT - CA4 In_Frame_Del p.F72del 0.22 TCGA-HU-A4GT-01 17 58270288 58270288 G A USP32 Silent p.D1146D 0.42 TCGA-HU-A4GT-01 17 61559016 61559016 G A ACE Silent p.G345G 0.43 TCGA-HU-A4GT-01 17 61895733 61895733 G A DDX42 Missense_Mutation p.R931H 0.42 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-HU-A4GT-01 17 62022372 62022372 G T SCN4A Silent p.R1257R 0.28 TCGA-HU-A4GT-01 17 65040806 65040806 C T CACNG1 Silent p.R10R 0.37 TCGA-HU-A4GT-01 17 65105424 65105425 - A HELZ Frame_Shift_Ins p.N1433* 0.35 TCGA-HU-A4GT-01 17 65190146 65190146 C T HELZ Missense_Mutation p.G165D 0.43 tolerated(0.18) benign(0.005) TCGA-HU-A4GT-01 17 65987954 65987954 C A C17orf58 3'UTR 0.45 TCGA-HU-A4GT-01 17 66871434 66871434 A G ABCA8 Missense_Mutation p.L1493P 0.14 deleterious(0) probably_damaging(0.928) TCGA-HU-A4GT-01 17 67256528 67256528 T - ABCA5 Frame_Shift_Del p.N1197Mfs*13 0.29 TCGA-HU-A4GT-01 17 6913275 6913275 C T ALOX12 Silent p.L548L 0.34 TCGA-HU-A4GT-01 17 7125995 7125995 T C ACADVL Silent p.P319P 0.23 TCGA-HU-A4GT-01 17 72306204 72306204 C G DNAI2 Missense_Mutation p.L466V 0.35 tolerated(0.22) benign(0.028) TCGA-HU-A4GT-01 17 72862943 72862943 A G FDXR Missense_Mutation p.V121A 0.20 deleterious(0.03) probably_damaging(0.945) TCGA-HU-A4GT-01 17 72926394 72926394 G A OTOP2 Missense_Mutation p.G222R 0.32 deleterious(0.02) benign(0.076) TCGA-HU-A4GT-01 17 7330046 7330046 C T C17orf74 Missense_Mutation p.R246C 0.38 deleterious(0.02) benign(0.356) TCGA-HU-A4GT-01 17 7339931 7339931 T C TMEM102 Silent p.S211S 0.36 TCGA-HU-A4GT-01 17 73487138 73487138 G A KIAA0195 Silent p.L379L 0.19 TCGA-HU-A4GT-01 17 73495137 73495137 T C KIAA0195 Silent p.N1324N 0.34 TCGA-HU-A4GT-01 17 73567789 73567789 G T LLGL2 Missense_Mutation p.G740C 0.09 deleterious(0) probably_damaging(1) TCGA-HU-A4GT-01 17 7359206 7359208 CTC - CHRNB1 In_Frame_Del p.S439del 0.41 TCGA-HU-A4GT-01 17 73750675 73750675 G A ITGB4 Missense_Mutation p.R1446Q 0.39 tolerated_low_confidence(0.07) benign(0.222) TCGA-HU-A4GT-01 17 73780920 73780922 AAT - UNK 5'UTR 0.27 TCGA-HU-A4GT-01 17 73805954 73805954 G A UNK Missense_Mutation p.R73Q 0.40 deleterious(0) probably_damaging(0.99) TCGA-HU-A4GT-01 17 7402384 7402384 C T POLR2A Silent p.D454D 0.33 TCGA-HU-A4GT-01 17 74155544 74155544 G A RNF157 Silent p.G392G 0.20 TCGA-HU-A4GT-01 17 74287434 74287434 C T QRICH2 Missense_Mutation p.G959D 0.10 tolerated(0.25) benign(0.013) TCGA-HU-A4GT-01 17 74383476 74383476 G A SPHK1 Missense_Mutation p.V408M 0.33 deleterious(0.02) possibly_damaging(0.78) TCGA-HU-A4GT-01 17 74464970 74464970 G A AANAT Missense_Mutation p.A93T 0.35 deleterious(0.05) benign(0.308) TCGA-HU-A4GT-01 17 7496047 7496047 T C FXR2 Missense_Mutation p.E565G 0.42 deleterious_low_confidence(0) possibly_damaging(0.826) TCGA-HU-A4GT-01 17 76123027 76123027 C T TMC6 Intron 0.33 TCGA-HU-A4GT-01 17 76533562 76533562 T C DNAH17 Missense_Mutation p.E893G 0.42 benign(0) TCGA-HU-A4GT-01 17 77076398 77076399 - T ENGASE Frame_Shift_Ins p.R228Sfs*3 0.20 TCGA-HU-A4GT-01 17 7734796 7734796 C - DNAH2 Frame_Shift_Del p.L4185Sfs*15 0.19 TCGA-HU-A4GT-01 17 7849161 7849161 G A CNTROB Missense_Mutation p.R617Q 0.30 deleterious(0.02) benign(0.44) TCGA-HU-A4GT-01 17 7851880 7851880 G - CNTROB Frame_Shift_Del p.A821Lfs*11 0.23 TCGA-HU-A4GT-01 17 7852808 7852809 - G CNTROB Frame_Shift_Ins p.V923Sfs*25 0.24 TCGA-HU-A4GT-01 17 79202811 79202811 C T ENTHD2 Missense_Mutation p.A499T 0.16 tolerated(0.55) benign(0.079) TCGA-HU-A4GT-01 17 79952719 79952719 G A ASPSCR1 Missense_Mutation p.G133R 0.10 tolerated(0.28) unknown(0) TCGA-HU-A4GT-01 17 80046753 80046753 C A FASN Splice_Site p.X769_splice 0.12 TCGA-HU-A4GT-01 17 80274823 80274823 G - CD7 Frame_Shift_Del p.V40Wfs*20 0.24 TCGA-HU-A4GT-01 17 80579639 80579639 A G WDR45B Missense_Mutation p.L155P 0.36 deleterious(0) probably_damaging(0.91) TCGA-HU-A4GT-01 17 80788598 80788598 G A ZNF750 Missense_Mutation p.T531M 0.27 tolerated(0.48) benign(0) TCGA-HU-A4GT-01 17 8092991 8092991 G A C17orf59 Silent p.G156G 0.30 TCGA-HU-A4GT-01 17 8701297 8701297 A G MFSD6L Missense_Mutation p.I381T 0.35 tolerated(0.28) benign(0.026) TCGA-HU-A4GT-01 17 8738638 8738638 C T PIK3R6 Silent p.A199A 0.31 TCGA-HU-A4GT-01 17 8793299 8793299 C T PIK3R5 Missense_Mutation p.G268R 0.17 tolerated(0.14) benign(0.005) TCGA-HU-A4GT-01 17 97064 97064 A G RPH3AL Missense_Mutation p.S151P 0.33 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GT-01 18 13057734 13057734 T C CEP192 Splice_Site p.X1419_splice 0.28 TCGA-HU-A4GT-01 18 18586657 18586657 T C ROCK1 Intron 0.31 TCGA-HU-A4GT-01 18 21422480 21422480 G A LAMA3 Missense_Mutation p.R1153Q 0.34 benign(0.002) TCGA-HU-A4GT-01 18 24445689 24445689 C - AQP4 5'UTR 0.15 TCGA-HU-A4GT-01 18 25532313 25532313 G A CDH2 Missense_Mutation p.A842V 0.30 deleterious(0.01) probably_damaging(1) TCGA-HU-A4GT-01 18 25570159 25570160 - T CDH2 Frame_Shift_Ins p.N500Kfs*3 0.23 TCGA-HU-A4GT-01 18 348068 348068 A T COLEC12 Missense_Mutation p.L93I 0.48 tolerated(0.1) possibly_damaging(0.899) TCGA-HU-A4GT-01 18 39617690 39617690 C T PIK3C3 Missense_Mutation p.T625M 0.38 deleterious(0.03) possibly_damaging(0.595) TCGA-HU-A4GT-01 18 40500689 40500689 A G RIT2 Intron 0.34 TCGA-HU-A4GT-01 18 44392421 44392421 A G PIAS2 Missense_Mutation p.I614T 0.35 tolerated_low_confidence(0.19) benign(0.152) TCGA-HU-A4GT-01 18 44559473 44559473 C T TCEB3B Silent p.A721A 0.31 TCGA-HU-A4GT-01 18 48331583 48331584 - C MRO Frame_Shift_Ins p.K138Efs*20 0.20 TCGA-HU-A4GT-01 18 51813729 51813729 T C POLI Silent p.R382R 0.60 TCGA-HU-A4GT-01 18 51888258 51888258 A G C18orf54 Missense_Mutation p.M177V 0.10 tolerated(0.65) benign(0) TCGA-HU-A4GT-01 18 51904589 51904589 G A C18orf54 Silent p.T364T 0.38 TCGA-HU-A4GT-01 18 5291879 5291879 A G ZBTB14 Missense_Mutation p.S110P 0.22 deleterious(0.01) probably_damaging(0.995) TCGA-HU-A4GT-01 18 54603098 54603098 G A WDR7 Missense_Mutation p.A1265T 0.41 deleterious(0) probably_damaging(0.957) TCGA-HU-A4GT-01 18 55019998 55019998 C T ST8SIA3 5'UTR 0.70 TCGA-HU-A4GT-01 18 55355551 55355551 C T ATP8B1 Missense_Mutation p.C470Y 0.32 deleterious(0.01) possibly_damaging(0.487) TCGA-HU-A4GT-01 18 56246440 56246440 T - ALPK2 Frame_Shift_Del p.K523Rfs*15 0.28 TCGA-HU-A4GT-01 18 59936180 59936180 A G KIAA1468 Missense_Mutation p.Q920R 0.25 tolerated(0.14) benign(0.122) TCGA-HU-A4GT-01 18 59966038 59966038 A G KIAA1468 Missense_Mutation p.M1159V 0.23 deleterious(0) probably_damaging(0.938) TCGA-HU-A4GT-01 18 63525178 63525178 A G CDH7 Silent p.A454A 0.34 TCGA-HU-A4GT-01 18 67697249 67697249 T - RTTN Frame_Shift_Del p.K1915Rfs*9 0.30 TCGA-HU-A4GT-01 18 72180856 72180856 G A CNDP2 Missense_Mutation p.V269I 0.33 tolerated(0.16) benign(0.001) TCGA-HU-A4GT-01 18 72229332 72229332 T C CNDP1 Missense_Mutation p.W173R 0.38 deleterious(0) probably_damaging(0.982) TCGA-HU-A4GT-01 18 72775214 72775216 AGG - ZNF407 In_Frame_Del p.E1847del 0.12 TCGA-HU-A4GT-01 18 72913756 72913756 C - ZADH2 Frame_Shift_Del p.G250Efs*8 0.19 TCGA-HU-A4GT-01 18 77893889 77893889 C T ADNP2 Missense_Mutation p.P198L 0.42 tolerated(0.44) benign(0.006) TCGA-HU-A4GT-01 18 9221974 9221975 - TGA ANKRD12 In_Frame_Ins p.D310dup 0.23 TCGA-HU-A4GT-01 18 9886919 9886919 A G TXNDC2 Missense_Mutation p.N148S 0.25 tolerated(0.19) benign(0.158) TCGA-HU-A4GT-01 19 10559812 10559812 C T PDE4A Silent p.P202P 0.20 TCGA-HU-A4GT-01 19 10685628 10685628 G - AP1M2 Frame_Shift_Del p.I376Sfs*20 0.24 TCGA-HU-A4GT-01 19 10934500 10934500 C A DNM2 Silent p.A606A 0.28 TCGA-HU-A4GT-01 19 11034828 11034828 G A YIPF2 Silent p.A136A 0.35 TCGA-HU-A4GT-01 19 11097604 11097604 C T SMARCA4 Missense_Mutation p.P262S 0.43 probably_damaging(0.968) TCGA-HU-A4GT-01 19 11326072 11326072 C T DOCK6 Missense_Mutation p.R1366H 0.40 tolerated(0.2) benign(0.302) TCGA-HU-A4GT-01 19 11624767 11624767 G A ECSIT Silent p.V122V 0.08 TCGA-HU-A4GT-01 19 12501535 12501535 G T ZNF799 Silent p.P559P 0.50 TCGA-HU-A4GT-01 19 12691724 12691725 - T ZNF490 Frame_Shift_Ins p.P389Tfs*3 0.20 TCGA-HU-A4GT-01 19 12822199 12822199 A G TNPO2 Missense_Mutation p.V343A 0.06 tolerated(0.57) benign(0.044) TCGA-HU-A4GT-01 19 12903208 12903208 A G JUNB Missense_Mutation p.Y208C 0.34 deleterious(0.01) probably_damaging(0.935) TCGA-HU-A4GT-01 19 13246947 13246947 T C NACC1 Missense_Mutation p.M309T 0.18 tolerated(0.09) possibly_damaging(0.632) TCGA-HU-A4GT-01 19 13883169 13883169 C T MRI1 3'UTR 0.20 TCGA-HU-A4GT-01 19 1390983 1390983 G A NDUFS7 Silent p.P114P 0.42 TCGA-HU-A4GT-01 19 1421167 1421167 T C DAZAP1 Silent p.D108D 0.06 TCGA-HU-A4GT-01 19 14271455 14271455 G T LPHN1 Missense_Mutation p.P527T 0.41 deleterious(0) probably_damaging(0.993) TCGA-HU-A4GT-01 19 14561159 14561159 C T PKN1 Missense_Mutation p.R220C 0.50 deleterious(0) probably_damaging(0.99) TCGA-HU-A4GT-01 19 15289908 15289908 C T NOTCH3 Missense_Mutation p.A1216T 0.32 tolerated(0.12) benign(0.006) TCGA-HU-A4GT-01 19 15466095 15466095 A G AKAP8 Silent p.P570P 0.38 TCGA-HU-A4GT-01 19 16345270 16345270 G A AP1M1 3'UTR 0.33 TCGA-HU-A4GT-01 19 16641463 16641463 T G CHERP Missense_Mutation p.N270T 0.06 deleterious(0.01) probably_damaging(0.988) TCGA-HU-A4GT-01 19 17343154 17343154 G A NR2F6 3'UTR 0.31 TCGA-HU-A4GT-01 19 17394613 17394613 G T ANKLE1 Missense_Mutation p.R347M 0.27 deleterious(0.01) possibly_damaging(0.599) TCGA-HU-A4GT-01 19 17405603 17405603 C A ABHD8 Missense_Mutation p.K271N 0.11 deleterious(0.04) possibly_damaging(0.684) TCGA-HU-A4GT-01 19 17883346 17883346 G T FCHO1 Silent p.T225T 0.47 TCGA-HU-A4GT-01 19 18376524 18376524 C T KIAA1683 Missense_Mutation p.G609D 0.37 tolerated(0.26) benign(0.369) TCGA-HU-A4GT-01 19 18561556 18561556 T C ELL Missense_Mutation p.D399G 0.25 deleterious(0.04) benign(0.023) TCGA-HU-A4GT-01 19 18876242 18876242 G A CRTC1 Silent p.Q321Q 0.39 TCGA-HU-A4GT-01 19 18899282 18899282 G A COMP Silent p.R268R 0.20 TCGA-HU-A4GT-01 19 1918915 1918915 G A SCAMP4 Silent p.A107A 0.24 TCGA-HU-A4GT-01 19 19407809 19407809 G A SUGP1 Missense_Mutation p.S411L 0.67 tolerated(0.11) benign(0.036) TCGA-HU-A4GT-01 19 19455695 19455695 G T MAU2 Missense_Mutation p.R372L 0.15 tolerated(0.07) possibly_damaging(0.592) TCGA-HU-A4GT-01 19 19751333 19751333 C T GMIP Missense_Mutation p.A96T 0.34 tolerated(0.25) benign(0.05) TCGA-HU-A4GT-01 19 19758069 19758069 C A ATP13A1 Missense_Mutation p.A992S 0.36 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GT-01 19 19770428 19770428 T C ATP13A1 Missense_Mutation p.K220R 0.28 tolerated(0.52) benign(0.005) TCGA-HU-A4GT-01 19 1986408 1986408 G - BTBD2 3'UTR 0.37 TCGA-HU-A4GT-01 19 2041038 2041038 C T MKNK2 Splice_Site p.X370_splice 0.40 TCGA-HU-A4GT-01 19 2078215 2078215 C T MOB3A Silent p.A115A 0.26 TCGA-HU-A4GT-01 19 22363929 22363929 T A ZNF676 Missense_Mutation p.Y197F 0.14 tolerated(0.08) possibly_damaging(0.492) TCGA-HU-A4GT-01 19 2254198 2254198 T G JSRP1 Missense_Mutation p.K84Q 0.20 deleterious(0.02) possibly_damaging(0.895) TCGA-HU-A4GT-01 19 23543932 23543932 G T ZNF91 Missense_Mutation p.L617I 0.11 deleterious(0) probably_damaging(0.918) TCGA-HU-A4GT-01 19 30934699 30934699 T C ZNF536 Missense_Mutation p.M77T 0.29 deleterious_low_confidence(0) benign(0.013) TCGA-HU-A4GT-01 19 33088981 33088981 T C ANKRD27 3'UTR 0.74 TCGA-HU-A4GT-01 19 33350757 33350757 G A SLC7A9 Missense_Mutation p.A288V 0.49 deleterious(0.01) probably_damaging(0.937) TCGA-HU-A4GT-01 19 34712563 34712563 A G LSM14A Missense_Mutation p.T430A 0.35 tolerated(0.23) benign(0) TCGA-HU-A4GT-01 19 35791237 35791237 C T MAG Silent p.D300D 0.42 TCGA-HU-A4GT-01 19 36017595 36017595 G A SBSN Missense_Mutation p.A530V 0.10 tolerated(1) benign(0.016) TCGA-HU-A4GT-01 19 36042379 36042379 C T ATP4A Missense_Mutation p.R952H 0.19 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GT-01 19 362324 362324 A G THEG Missense_Mutation p.L339P 0.23 deleterious(0) probably_damaging(1) TCGA-HU-A4GT-01 19 3651850 3651850 G A PIP5K1C Silent p.R367R 0.42 TCGA-HU-A4GT-01 19 36605757 36605757 A G POLR2I Translation_Start_Site p.M1? 0.34 deleterious_low_confidence(0.02) benign(0.227) TCGA-HU-A4GT-01 19 37310238 37310238 T - ZNF790 Frame_Shift_Del p.K336Nfs*18 0.13 TCGA-HU-A4GT-01 19 37382841 37382841 A - ZNF829 Frame_Shift_Del p.L366Yfs*3 0.23 TCGA-HU-A4GT-01 19 3823364 3823364 C A ZFR2 Missense_Mutation p.Q417H 0.26 tolerated(0.1) possibly_damaging(0.629) TCGA-HU-A4GT-01 19 38948932 38948932 G A RYR1 Missense_Mutation p.G723R 0.06 probably_damaging(1) TCGA-HU-A4GT-01 19 39068588 39068588 C T RYR1 Missense_Mutation p.R4735W 0.31 unknown(0) TCGA-HU-A4GT-01 19 39334550 39334550 G A HNRNPL Missense_Mutation p.T271I 0.34 deleterious(0) possibly_damaging(0.491) TCGA-HU-A4GT-01 19 3976713 3976713 C T EEF2 Missense_Mutation p.G806S 0.33 deleterious(0.01) probably_damaging(1) TCGA-HU-A4GT-01 19 39898949 39898949 A G ZFP36 Silent p.S203S 0.31 TCGA-HU-A4GT-01 19 40319090 40319090 C T DYRK1B Silent p.A218A 0.24 TCGA-HU-A4GT-01 19 40364151 40364151 C T FCGBP Missense_Mutation p.A4831T 0.18 benign(0.183) TCGA-HU-A4GT-01 19 40904471 40904471 G T PRX Intron 0.47 TCGA-HU-A4GT-01 19 41008833 41008833 T C SPTBN4 Missense_Mutation p.V452A 0.18 deleterious(0) benign(0.201) TCGA-HU-A4GT-01 19 41220300 41220300 T A ADCK4 Silent p.G35G 0.09 TCGA-HU-A4GT-01 19 42224958 42224958 A G CEACAM5 Missense_Mutation p.N630D 0.08 tolerated(0.13) benign(0.036) TCGA-HU-A4GT-01 19 4280240 4280240 T C SHD Silent p.P60P 0.08 TCGA-HU-A4GT-01 19 43237181 43237181 T C PSG3 Missense_Mutation p.N155S 0.30 deleterious(0) possibly_damaging(0.626) TCGA-HU-A4GT-01 19 43529018 43529018 G A PSG11 Silent p.D85D 0.28 TCGA-HU-A4GT-01 19 44096012 44096012 A G IRGQ 3'UTR 0.13 TCGA-HU-A4GT-01 19 44515243 44515243 T C ZNF230 Missense_Mutation p.L351P 0.38 deleterious(0) probably_damaging(1) TCGA-HU-A4GT-01 19 44679757 44679757 T C ZNF226 Silent p.C114C 0.16 TCGA-HU-A4GT-01 19 45001352 45001352 G A ZNF180 Missense_Mutation p.P39L 0.33 tolerated(1) benign(0) TCGA-HU-A4GT-01 19 4529193 4529193 G A PLIN5 Missense_Mutation p.R138C 0.35 deleterious(0) probably_damaging(0.956) TCGA-HU-A4GT-01 19 45655872 45655872 C T NKPD1 Missense_Mutation p.R608H 0.21 tolerated(0.13) benign(0.004) TCGA-HU-A4GT-01 19 46122427 46122427 C T EML2 Missense_Mutation p.G583D 0.45 deleterious(0) probably_damaging(0.996) TCGA-HU-A4GT-01 19 46184926 46184926 C - GIPR Intron 0.31 TCGA-HU-A4GT-01 19 46271470 46271470 G T SIX5 Silent p.R211R 0.50 TCGA-HU-A4GT-01 19 46274622 46274628 CCGTGGC - DMPK Frame_Shift_Del p.A553Ifs*6 0.32 TCGA-HU-A4GT-01 19 47201084 47201084 A G PRKD2 Missense_Mutation p.M382T 0.39 deleterious(0) possibly_damaging(0.728) TCGA-HU-A4GT-01 19 47228899 47228899 C T STRN4 Missense_Mutation p.D426N 0.35 tolerated(1) possibly_damaging(0.536) TCGA-HU-A4GT-01 19 47280536 47280536 G A SLC1A5 Silent p.C395C 0.43 TCGA-HU-A4GT-01 19 48657203 48657203 C T LIG1 Missense_Mutation p.R131Q 0.20 deleterious_low_confidence(0.02) possibly_damaging(0.572) TCGA-HU-A4GT-01 19 48789818 48789818 T - ZNF114 Frame_Shift_Del p.Y315Ifs*6 0.23 TCGA-HU-A4GT-01 19 49140174 49140174 T C DBP Silent p.G26G 0.33 TCGA-HU-A4GT-01 19 49472668 49472668 C T GYS1 Silent p.A697A 0.47 TCGA-HU-A4GT-01 19 49510567 49510567 C T RUVBL2 Missense_Mutation p.T135M 0.31 deleterious(0.01) probably_damaging(0.955) TCGA-HU-A4GT-01 19 49994304 49994304 G A RPL13A Missense_Mutation p.R117Q 0.40 deleterious(0.01) benign(0.114) TCGA-HU-A4GT-01 19 50099557 50099557 C A PRR12 Silent p.T655T 0.17 TCGA-HU-A4GT-01 19 50191500 50191500 T C PRMT1 Nonstop_Mutation p.*372Rext*16 0.37 TCGA-HU-A4GT-01 19 50216985 50216985 T C CPT1C 3'UTR 0.24 TCGA-HU-A4GT-01 19 50333994 50333995 - C MED25 Frame_Shift_Ins p.F320Lfs*79 0.10 TCGA-HU-A4GT-01 19 50363526 50363527 - G PTOV1 Frame_Shift_Ins p.*417Vfs*24 0.31 TCGA-HU-A4GT-01 19 50542460 50542460 G A ZNF473 Missense_Mutation p.G18R 0.23 deleterious(0) benign(0) TCGA-HU-A4GT-01 19 50905061 50905061 C - POLD1 Frame_Shift_Del p.P116Hfs*53 0.09 TCGA-HU-A4GT-01 19 51172384 51172384 G T SHANK1 Missense_Mutation p.L945I 0.69 benign(0.364) TCGA-HU-A4GT-01 19 51215284 51215284 G A SHANK1 Missense_Mutation p.P294S 0.50 probably_damaging(0.976) TCGA-HU-A4GT-01 19 52448330 52448330 A C ZNF613 Missense_Mutation p.K398N 0.27 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GT-01 19 52497205 52497205 T G ZNF615 Missense_Mutation p.N386T 0.37 tolerated(0.37) benign(0.029) TCGA-HU-A4GT-01 19 54660653 54660654 - G LENG1 Frame_Shift_Ins p.P142Afs*7 0.30 TCGA-HU-A4GT-01 19 54711410 54711410 G T RPS9 Silent p.G184G 0.39 TCGA-HU-A4GT-01 19 54746018 54746018 T G LILRA6 Missense_Mutation p.K80T 0.26 deleterious(0.01) probably_damaging(0.941) TCGA-HU-A4GT-01 19 54930326 54930326 G A TTYH1 Missense_Mutation p.A51T 0.35 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GT-01 19 55020282 55020282 C T LAIR2 Silent p.P134P 0.42 TCGA-HU-A4GT-01 19 55447772 55447772 C T NLRP7 Silent p.A719A 0.46 TCGA-HU-A4GT-01 19 55992708 55992708 C T ZNF628 Missense_Mutation p.R50W 0.09 deleterious(0) probably_damaging(0.995) TCGA-HU-A4GT-01 19 56163920 56163920 G A CCDC106 Silent p.T217T 0.33 TCGA-HU-A4GT-01 19 56179935 56179935 T C U2AF2 Missense_Mutation p.Y269H 0.22 deleterious(0.04) possibly_damaging(0.62) TCGA-HU-A4GT-01 19 5700808 5700808 G A LONP1 Missense_Mutation p.R500C 0.46 deleterious(0) probably_damaging(0.997) TCGA-HU-A4GT-01 19 57133202 57133202 G A ZNF71 Missense_Mutation p.E183K 0.34 deleterious(0) probably_damaging(0.99) TCGA-HU-A4GT-01 19 57175364 57175364 G A ZNF835 Silent p.H401H 0.44 TCGA-HU-A4GT-01 19 57175366 57175366 G T ZNF835 Missense_Mutation p.H401N 0.39 tolerated(0.07) benign(0.428) TCGA-HU-A4GT-01 19 57286338 57286338 A G ZIM2 Silent p.H434H 0.40 TCGA-HU-A4GT-01 19 57328919 57328919 T - PEG3 Frame_Shift_Del p.K297Nfs*17 0.23 TCGA-HU-A4GT-01 19 57640238 57640239 - A USP29 Frame_Shift_Ins p.R68Kfs*18 0.22 TCGA-HU-A4GT-01 19 57743435 57743435 C T AURKC Missense_Mutation p.R47C 0.21 deleterious(0.03) benign(0.218) TCGA-HU-A4GT-01 19 5832343 5832344 - G FUT6 Frame_Shift_Ins p.R79Pfs*11 0.25 TCGA-HU-A4GT-01 19 58385591 58385591 A C ZNF814 Missense_Mutation p.F389L 0.23 deleterious(0) possibly_damaging(0.676) TCGA-HU-A4GT-01 19 58640438 58640439 TC - ZNF329 Frame_Shift_Del p.K145Afs*6 0.29 TCGA-HU-A4GT-01 19 629979 629979 T G POLRMT Missense_Mutation p.K128T 0.21 deleterious(0.04) benign(0.115) TCGA-HU-A4GT-01 19 6468935 6468936 - C DENND1C Frame_Shift_Ins p.S480Lfs*56 0.45 TCGA-HU-A4GT-01 19 6496155 6496155 C T TUBB4A Missense_Mutation p.V119I 0.38 tolerated_low_confidence(0.06) benign(0.029) TCGA-HU-A4GT-01 19 7676636 7676636 C T CAMSAP3 Silent p.V446V 0.12 TCGA-HU-A4GT-01 19 7677715 7677715 G A CAMSAP3 Missense_Mutation p.R806H 0.53 deleterious(0.03) probably_damaging(0.977) TCGA-HU-A4GT-01 19 7692277 7692277 C T XAB2 Missense_Mutation p.R125H 0.55 tolerated(0.41) benign(0.004) TCGA-HU-A4GT-01 19 8154554 8154554 T C FBN3 Missense_Mutation p.D2084G 0.08 deleterious(0.01) possibly_damaging(0.539) TCGA-HU-A4GT-01 19 8563150 8563150 C T PRAM1 Missense_Mutation p.A486T 0.26 tolerated(0.11) benign(0.08) TCGA-HU-A4GT-01 19 8609190 8609190 G A MYO1F Silent p.Y505Y 0.38 TCGA-HU-A4GT-01 19 9272026 9272026 G A ZNF317 Missense_Mutation p.D569N 0.37 tolerated(0.38) probably_damaging(0.994) TCGA-HU-A4GT-01 19 9362157 9362157 C - OR7E24 Frame_Shift_Del p.L148Cfs*7 0.30 TCGA-HU-A4GT-01 1 101467107 101467107 A - DPH5 Frame_Shift_Del p.W136Gfs*14 0.15 TCGA-HU-A4GT-01 1 10231304 10231304 C G UBE4B Missense_Mutation p.P1148A 0.42 deleterious(0) probably_damaging(1) TCGA-HU-A4GT-01 1 104160134 104160134 A G AMY2A Silent p.G24G 0.07 TCGA-HU-A4GT-01 1 10690008 10690008 G A PEX14 Silent p.R366R 0.12 TCGA-HU-A4GT-01 1 10713402 10713402 C T CASZ1 Intron 0.26 TCGA-HU-A4GT-01 1 109556514 109556515 - A WDR47 Frame_Shift_Ins p.L92Ffs*7 0.17 TCGA-HU-A4GT-01 1 109795382 109795382 T C CELSR2 Missense_Mutation p.V894A 0.25 deleterious(0.02) probably_damaging(0.93) TCGA-HU-A4GT-01 1 110050474 110050477 ACAG - AMIGO1 Frame_Shift_Del p.S353Wfs*3 0.31 TCGA-HU-A4GT-01 1 110051154 110051154 C T AMIGO1 Silent p.E127E 0.20 TCGA-HU-A4GT-01 1 110765982 110765982 A G KCNC4 Missense_Mutation p.K359E 0.40 deleterious(0) probably_damaging(0.963) TCGA-HU-A4GT-01 1 11076929 11076929 T C TARDBP Silent p.D89D 0.21 TCGA-HU-A4GT-01 1 1115538 1115538 T C TTLL10 Silent p.S108S 0.43 TCGA-HU-A4GT-01 1 111824383 111824383 C T CHIAP2 RNA 0.28 TCGA-HU-A4GT-01 1 113057511 113057511 G - WNT2B Frame_Shift_Del p.A68Hfs*3 0.28 TCGA-HU-A4GT-01 1 114401660 114401660 A G PTPN22 Silent p.D79D 0.19 TCGA-HU-A4GT-01 1 11580781 11580781 C T PTCHD2 Silent p.F746F 0.40 TCGA-HU-A4GT-01 1 11591751 11591751 C T PTCHD2 Missense_Mutation p.S1120F 0.33 deleterious(0) possibly_damaging(0.646) TCGA-HU-A4GT-01 1 116935565 116935565 C T ATP1A1 Silent p.Y474Y 0.42 TCGA-HU-A4GT-01 1 116941581 116941581 T C ATP1A1 Missense_Mutation p.S775P 0.23 deleterious(0) probably_damaging(0.996) TCGA-HU-A4GT-01 1 117127587 117127587 C T IGSF3 Missense_Mutation p.R863H 0.29 deleterious(0.04) benign(0.054) TCGA-HU-A4GT-01 1 117554394 117554394 G A CD101 Missense_Mutation p.R216Q 0.40 deleterious(0) probably_damaging(1) TCGA-HU-A4GT-01 1 120437823 120437823 A - ADAM30 Frame_Shift_Del p.F379Lfs*11 0.31 TCGA-HU-A4GT-01 1 12785194 12785194 G A AADACL3 Missense_Mutation p.R95H 0.29 tolerated(0.06) possibly_damaging(0.467) TCGA-HU-A4GT-01 1 1372677 1372677 C T VWA1 Silent p.S148S 0.43 TCGA-HU-A4GT-01 1 13910569 13910569 C T PDPN Missense_Mutation p.A90V 0.37 tolerated(0.26) probably_damaging(0.994) TCGA-HU-A4GT-01 1 145579269 145579269 C A PIAS3 Silent p.P202P 0.37 TCGA-HU-A4GT-01 1 146400181 146400181 C T NBPF12 Silent p.D219D 0.32 TCGA-HU-A4GT-01 1 149884981 149884981 C - SV2A Frame_Shift_Del p.E138Rfs*39 0.23 TCGA-HU-A4GT-01 1 149943026 149943026 C T OTUD7B Missense_Mutation p.R80Q 0.50 deleterious(0.02) probably_damaging(0.996) TCGA-HU-A4GT-01 1 150300845 150300845 C T PRPF3 Missense_Mutation p.R115C 0.22 deleterious(0.03) benign(0.002) TCGA-HU-A4GT-01 1 150476902 150476902 A G TARS2 Missense_Mutation p.Q570R 0.30 tolerated(0.17) benign(0.003) TCGA-HU-A4GT-01 1 150549866 150549866 T C MCL1 Silent p.A346A 0.17 TCGA-HU-A4GT-01 1 151105901 151105901 C T SEMA6C Missense_Mutation p.A650T 0.54 deleterious(0) possibly_damaging(0.695) TCGA-HU-A4GT-01 1 151341935 151341935 A G SELENBP1 Missense_Mutation p.S53P 0.24 deleterious(0) probably_damaging(1) TCGA-HU-A4GT-01 1 151774033 151774033 G - LINGO4 Frame_Shift_Del p.P383Lfs*14 0.26 TCGA-HU-A4GT-01 1 152279184 152279184 G A FLG Silent p.G2726G 0.14 TCGA-HU-A4GT-01 1 154130051 154130051 A G NUP210L 5'Flank 0.20 TCGA-HU-A4GT-01 1 154522741 154522742 - T UBE2Q1 3'UTR 0.25 TCGA-HU-A4GT-01 1 154926189 154926189 G T PBXIP1 Silent p.S3S 0.34 TCGA-HU-A4GT-01 1 155029473 155029473 T C ADAM15 Silent p.H348H 0.22 TCGA-HU-A4GT-01 1 155145709 155145709 G A KRTCAP2 Missense_Mutation p.R24W 0.38 tolerated_low_confidence(0.07) benign(0) TCGA-HU-A4GT-01 1 155300268 155300268 G A RUSC1 Missense_Mutation p.R872H 0.15 deleterious(0.01) benign(0.066) TCGA-HU-A4GT-01 1 155449752 155449753 - T ASH1L Frame_Shift_Ins p.I970Nfs*19 0.31 TCGA-HU-A4GT-01 1 155451418 155451418 C A ASH1L Missense_Mutation p.G415C 0.29 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-HU-A4GT-01 1 155630091 155630091 C T YY1AP1 Missense_Mutation p.R675K 0.33 tolerated_low_confidence(1) benign(0.001) TCGA-HU-A4GT-01 1 156024741 156024741 A C LAMTOR2 Missense_Mutation p.S21R 0.09 deleterious(0.04) possibly_damaging(0.507) TCGA-HU-A4GT-01 1 1573143 1573143 G T CDK11B Missense_Mutation p.P485H 0.06 unknown(0) TCGA-HU-A4GT-01 1 1575717 1575717 C A CDK11B Missense_Mutation p.G394V 0.18 unknown(0) TCGA-HU-A4GT-01 1 159923935 159923936 - C SLAMF9 5'UTR 0.14 TCGA-HU-A4GT-01 1 160011281 160011281 G A KCNJ10 Missense_Mutation p.R348C 0.25 tolerated(0.19) possibly_damaging(0.663) TCGA-HU-A4GT-01 1 160261217 160261218 - GA COPA Frame_Shift_Ins p.N1119Sfs*21 0.22 TCGA-HU-A4GT-01 1 160915016 160915016 A G ITLN2 Missense_Mutation p.F298L 0.57 tolerated(0.24) benign(0.216) TCGA-HU-A4GT-01 1 161275649 161275649 G A MPZ 3'UTR 0.30 TCGA-HU-A4GT-01 1 162724999 162724999 G A DDR2 Silent p.P157P 0.20 TCGA-HU-A4GT-01 1 162769541 162769541 A G HSD17B7 Silent p.E152E 0.12 TCGA-HU-A4GT-01 1 163042651 163042651 A G RGS4 Missense_Mutation p.H166R 0.34 deleterious(0.01) possibly_damaging(0.599) TCGA-HU-A4GT-01 1 16475133 16475133 C - EPHA2 Frame_Shift_Del p.C188Lfs*205 0.20 TCGA-HU-A4GT-01 1 1663938 1663938 C T SLC35E2 Missense_Mutation p.A253T 0.36 deleterious_low_confidence(0.02) benign(0.009) TCGA-HU-A4GT-01 1 167823708 167823708 A C ADCY10 Missense_Mutation p.C731G 0.16 tolerated(0.33) benign(0.005) TCGA-HU-A4GT-01 1 167849742 167849742 C A ADCY10 Missense_Mutation p.V376F 0.17 deleterious(0.01) probably_damaging(0.914) TCGA-HU-A4GT-01 1 168274409 168274409 C T TBX19 Silent p.Y297Y 0.43 TCGA-HU-A4GT-01 1 171510625 171510625 G A PRRC2C Silent p.E1338E 0.10 TCGA-HU-A4GT-01 1 175092640 175092640 T C TNN Missense_Mutation p.Y919H 0.13 deleterious(0) probably_damaging(0.994) TCGA-HU-A4GT-01 1 177245416 177245416 T C BRINP2 Silent p.G286G 0.23 TCGA-HU-A4GT-01 1 180953905 180953905 A G STX6 Missense_Mutation p.M200T 0.53 deleterious(0) probably_damaging(0.997) TCGA-HU-A4GT-01 1 181693655 181693655 C T CACNA1E Silent p.N708N 0.21 TCGA-HU-A4GT-01 1 181695292 181695292 C T CACNA1E Missense_Mutation p.S745L 0.38 tolerated(0.34) benign(0.097) TCGA-HU-A4GT-01 1 183221759 183221759 C A NMNAT2 3'UTR 0.32 TCGA-HU-A4GT-01 1 185200810 185200810 C T SWT1 Missense_Mutation p.A804V 0.16 tolerated(0.06) benign(0.129) TCGA-HU-A4GT-01 1 185703900 185703900 A - HMCN1 5'UTR 0.29 TCGA-HU-A4GT-01 1 186276739 186276739 G A PRG4 Missense_Mutation p.E630K 0.12 unknown(0) TCGA-HU-A4GT-01 1 186276818 186276818 C T PRG4 Missense_Mutation p.P656L 0.08 unknown(0) TCGA-HU-A4GT-01 1 186301402 186301402 T C TPR Silent p.S1843S 0.22 TCGA-HU-A4GT-01 1 19166440 19166440 G A TAS1R2 Missense_Mutation p.R725C 0.37 deleterious(0.03) probably_damaging(0.953) TCGA-HU-A4GT-01 1 193051754 193051754 T C TROVE2 Silent p.P460P 0.26 TCGA-HU-A4GT-01 1 193149407 193149407 A - B3GALT2 3'UTR 0.55 TCGA-HU-A4GT-01 1 19549207 19549207 A G EMC1 Missense_Mutation p.V833A 0.24 deleterious(0) probably_damaging(0.991) TCGA-HU-A4GT-01 1 19593919 19593919 T C AKR7L Missense_Mutation p.S113G 0.16 possibly_damaging(0.808) TCGA-HU-A4GT-01 1 19612726 19612726 T C AKR7A3 Missense_Mutation p.T119A 0.08 deleterious(0.02) benign(0.201) TCGA-HU-A4GT-01 1 19638351 19638351 C A AKR7A2 Missense_Mutation p.G90W 0.10 deleterious(0) possibly_damaging(0.892) TCGA-HU-A4GT-01 1 196709878 196709878 C T CFH Missense_Mutation p.A971V 0.20 tolerated(0.4) benign(0.007) TCGA-HU-A4GT-01 1 196758799 196758799 G T CFHR3 Intron 0.25 TCGA-HU-A4GT-01 1 200827020 200827020 A - CAMSAP2 Frame_Shift_Del p.M1426* 0.13 TCGA-HU-A4GT-01 1 200882845 200882845 T C C1orf106 3'UTR 0.24 TCGA-HU-A4GT-01 1 201817522 201817523 - A IPO9 Frame_Shift_Ins p.I107Nfs*9 0.33 TCGA-HU-A4GT-01 1 201984387 201984387 T C ELF3 Missense_Mutation p.V351A 0.35 deleterious(0) probably_damaging(0.995) TCGA-HU-A4GT-01 1 20304571 20304571 G A PLA2G2A Missense_Mutation p.R77C 0.37 tolerated(0.09) probably_damaging(0.94) TCGA-HU-A4GT-01 1 204092326 204092326 C T SOX13 Silent p.C407C 0.33 TCGA-HU-A4GT-01 1 204210879 204210880 - G PLEKHA6 Frame_Shift_Ins p.R746Qfs*35 0.35 TCGA-HU-A4GT-01 1 204228411 204228411 C - PLEKHA6 Frame_Shift_Del p.V328Yfs*172 0.21 TCGA-HU-A4GT-01 1 20517794 20517794 C A UBXN10 Missense_Mutation p.P247H 0.22 deleterious(0) probably_damaging(1) TCGA-HU-A4GT-01 1 205241235 205241235 G A TMCC2 Missense_Mutation p.V705M 0.46 tolerated(0.2) benign(0.223) TCGA-HU-A4GT-01 1 205779571 205779571 A G SLC41A1 5'UTR 0.07 TCGA-HU-A4GT-01 1 209956976 209956976 A G C1orf74 Silent p.L2L 0.07 TCGA-HU-A4GT-01 1 210971048 210971048 G A KCNH1 Missense_Mutation p.R573C 0.17 deleterious(0) probably_damaging(0.996) TCGA-HU-A4GT-01 1 2125206 2125206 G A C1orf86 Silent p.P114P 0.10 TCGA-HU-A4GT-01 1 216251649 216251649 G C USH2A Missense_Mutation p.T1785R 0.50 possibly_damaging(0.908) TCGA-HU-A4GT-01 1 22178356 22178356 G A HSPG2 Missense_Mutation p.R2312W 0.19 probably_damaging(0.997) TCGA-HU-A4GT-01 1 222803243 222803243 C G MIA3 Missense_Mutation p.S894C 0.26 tolerated(0.07) possibly_damaging(0.784) TCGA-HU-A4GT-01 1 223284008 223284008 A G TLR5 Missense_Mutation p.M789T 0.22 deleterious(0) possibly_damaging(0.686) TCGA-HU-A4GT-01 1 224581610 224581610 G A WDR26 Missense_Mutation p.S627F 0.36 tolerated(0.19) benign(0.209) TCGA-HU-A4GT-01 1 225592396 225592396 A G LBR Missense_Mutation p.V499A 0.59 tolerated(0.26) benign(0.345) TCGA-HU-A4GT-01 1 225707117 225707118 TC - ENAH Frame_Shift_Del p.R195Tfs*79 0.32 TCGA-HU-A4GT-01 1 226923439 226923439 A G ITPKB Missense_Mutation p.M574T 0.34 tolerated(0.06) benign(0.003) TCGA-HU-A4GT-01 1 228547510 228547510 C T OBSCN Intron 0.39 TCGA-HU-A4GT-01 1 22965826 22965826 A - C1QA Frame_Shift_Del p.K223Rfs*59 0.22 TCGA-HU-A4GT-01 1 232649831 232649831 C T SIPA1L2 Missense_Mutation p.E419K 0.26 deleterious(0.01) probably_damaging(0.995) TCGA-HU-A4GT-01 1 233514953 233514953 C T MLK4 Missense_Mutation p.A734V 0.07 tolerated(0.1) possibly_damaging(0.541) TCGA-HU-A4GT-01 1 235357476 235357477 - T ARID4B Frame_Shift_Ins p.N659Kfs*3 0.16 TCGA-HU-A4GT-01 1 235971943 235971943 A G LYST Silent p.V725V 0.50 TCGA-HU-A4GT-01 1 236749213 236749213 C T HEATR1 Silent p.K652K 0.11 TCGA-HU-A4GT-01 1 240256760 240256760 C A FMN2 Missense_Mutation p.L451M 0.07 unknown(0) TCGA-HU-A4GT-01 1 240286560 240286560 T C FMN2 Missense_Mutation p.I566T 0.08 unknown(0) TCGA-HU-A4GT-01 1 240656267 240656267 G A GREM2 3'UTR 0.34 TCGA-HU-A4GT-01 1 241753345 241753345 T - KMO Frame_Shift_Del p.Q379Rfs*28 0.30 TCGA-HU-A4GT-01 1 243349558 243349558 T C CEP170 Intron 0.12 TCGA-HU-A4GT-01 1 243388559 243388560 - A CEP170 Frame_Shift_Ins p.L8Ffs*22 0.40 TCGA-HU-A4GT-01 1 247587785 247587785 T G NLRP3 Missense_Mutation p.L347R 0.15 deleterious(0) probably_damaging(0.991) TCGA-HU-A4GT-01 1 24782721 24782721 T C NIPAL3 Missense_Mutation p.V244A 0.20 tolerated(0.06) benign(0.345) TCGA-HU-A4GT-01 1 248512652 248512652 C T OR14C36 Silent p.S192S 0.46 TCGA-HU-A4GT-01 1 248525674 248525674 G T OR2T4 Missense_Mutation p.E264D 0.06 deleterious(0.03) benign(0.33) TCGA-HU-A4GT-01 1 2493065 2493065 T C TNFRSF14 Intron 0.22 TCGA-HU-A4GT-01 1 24979063 24979063 G A SRRM1 Silent p.T288T 0.20 TCGA-HU-A4GT-01 1 27631505 27631505 A G WDTC1 Missense_Mutation p.I552V 0.18 tolerated(0.17) possibly_damaging(0.675) TCGA-HU-A4GT-01 1 27677481 27677481 G A SYTL1 Intron 0.62 TCGA-HU-A4GT-01 1 27878317 27878317 C T AHDC1 Missense_Mutation p.G104S 0.34 tolerated_low_confidence(0.96) benign(0) TCGA-HU-A4GT-01 1 27950491 27950491 C T FGR Intron 0.31 TCGA-HU-A4GT-01 1 28564496 28564496 A G ATPIF1 3'UTR 0.08 TCGA-HU-A4GT-01 1 28858744 28858744 C T RCC1 Missense_Mutation p.S139L 0.41 deleterious(0.01) possibly_damaging(0.521) TCGA-HU-A4GT-01 1 29070128 29070128 T C YTHDF2 Missense_Mutation p.M449T 0.42 tolerated(0.25) benign(0.007) TCGA-HU-A4GT-01 1 32256815 32256815 G A SPOCD1 Silent p.L1014L 0.45 TCGA-HU-A4GT-01 1 32259828 32259828 C A SPOCD1 Missense_Mutation p.Q760H 0.39 tolerated(0.05) possibly_damaging(0.563) TCGA-HU-A4GT-01 1 33245788 33245788 G A YARS Missense_Mutation p.P411L 0.40 deleterious(0.01) benign(0.105) TCGA-HU-A4GT-01 1 33548004 33548004 G A ADC Intron 0.38 TCGA-HU-A4GT-01 1 34038130 34038130 G A CSMD2 Missense_Mutation p.R2582C 0.09 tolerated(0.06) possibly_damaging(0.505) TCGA-HU-A4GT-01 1 35370000 35370000 G A DLGAP3 Nonsense_Mutation p.R329* 0.42 TCGA-HU-A4GT-01 1 35457859 35457859 T C ZMYM6 Missense_Mutation p.T708A 0.38 deleterious(0.03) benign(0.118) TCGA-HU-A4GT-01 1 36935359 36935359 A G CSF3R Silent p.P456P 0.26 TCGA-HU-A4GT-01 1 39797891 39797892 - A MACF1 Intron 0.25 TCGA-HU-A4GT-01 1 40129045 40129045 G T NT5C1A Silent p.A165A 0.30 TCGA-HU-A4GT-01 1 40205879 40205879 C T PPIE Missense_Mutation p.A25V 0.13 deleterious(0.01) probably_damaging(0.998) TCGA-HU-A4GT-01 1 40756543 40756543 T - ZMPSTE24 Frame_Shift_Del p.L362Yfs*5 0.44 TCGA-HU-A4GT-01 1 43773243 43773243 G T TIE1 Missense_Mutation p.A305S 0.36 tolerated(0.07) possibly_damaging(0.725) TCGA-HU-A4GT-01 1 43778821 43778821 G A TIE1 Missense_Mutation p.R648Q 0.49 tolerated(0.12) benign(0.013) TCGA-HU-A4GT-01 1 44086873 44086873 T C PTPRF Silent p.R1875R 0.38 TCGA-HU-A4GT-01 1 44684864 44684864 G A DMAP1 Missense_Mutation p.R286H 0.45 deleterious(0.04) probably_damaging(0.932) TCGA-HU-A4GT-01 1 45345566 45345566 C T EIF2B3 Missense_Mutation p.C300Y 0.34 deleterious(0) probably_damaging(0.996) TCGA-HU-A4GT-01 1 46685987 46685987 A T LURAP1 3'UTR 0.32 TCGA-HU-A4GT-01 1 46745947 46745947 A G LRRC41 Missense_Mutation p.L646P 0.29 deleterious(0) possibly_damaging(0.883) TCGA-HU-A4GT-01 1 47030770 47030770 A G MKNK1 Silent p.S237S 0.08 TCGA-HU-A4GT-01 1 47284440 47284440 G A CYP4B1 Missense_Mutation p.G498D 0.19 deleterious(0) probably_damaging(0.941) TCGA-HU-A4GT-01 1 48708212 48708212 C T SLC5A9 Silent p.S612S 0.45 TCGA-HU-A4GT-01 1 52956410 52956410 C T ZCCHC11 Missense_Mutation p.R461Q 0.37 tolerated(0.29) benign(0.013) TCGA-HU-A4GT-01 1 54870568 54870568 A G SSBP3 Missense_Mutation p.V31A 0.10 deleterious(0.03) probably_damaging(0.93) TCGA-HU-A4GT-01 1 55273679 55273679 A G C1orf177 Missense_Mutation p.T159A 0.40 tolerated(0.22) benign(0.003) TCGA-HU-A4GT-01 1 5951051 5951051 A G NPHP4 Silent p.P727P 0.30 TCGA-HU-A4GT-01 1 61848996 61848996 C T NFIA Missense_Mutation p.A390V 0.21 deleterious(0.01) benign(0.221) TCGA-HU-A4GT-01 1 62267407 62267407 A - INADL Frame_Shift_Del p.N507Mfs*7 0.34 TCGA-HU-A4GT-01 1 6257785 6257785 T - RPL22 Frame_Shift_Del p.K15Rfs*5 0.36 TCGA-HU-A4GT-01 1 6294985 6294985 A G ICMT Missense_Mutation p.L82P 0.14 deleterious(0) possibly_damaging(0.702) TCGA-HU-A4GT-01 1 64608132 64608132 G A ROR1 Missense_Mutation p.V325I 0.44 tolerated(0.41) benign(0.096) TCGA-HU-A4GT-01 1 64669696 64669696 G A UBE2U 5'UTR 0.41 TCGA-HU-A4GT-01 1 66081741 66081741 C T LEPR Silent p.N682N 0.40 TCGA-HU-A4GT-01 1 66831383 66831384 - T PDE4B Frame_Shift_Ins p.A442Cfs*6 0.22 TCGA-HU-A4GT-01 1 6704704 6704704 G A DNAJC11 Silent p.Y337Y 0.29 TCGA-HU-A4GT-01 1 68171151 68171151 T - GNG12 Frame_Shift_Del p.T68Lfs*22 0.22 TCGA-HU-A4GT-01 1 70697889 70697890 - T SRSF11 Intron 0.30 TCGA-HU-A4GT-01 1 7724522 7724522 G - CAMTA1 Frame_Shift_Del p.G640Afs*4 0.28 TCGA-HU-A4GT-01 1 85666014 85666014 G T SYDE2 Silent p.A222A 0.08 TCGA-HU-A4GT-01 1 87012848 87012848 C T CLCA4 Silent p.L16L 0.24 TCGA-HU-A4GT-01 1 89325936 89325936 T C GTF2B Missense_Mutation p.N98D 0.22 tolerated(0.62) benign(0.028) TCGA-HU-A4GT-01 1 89597806 89597806 G A GBP7 3'UTR 0.38 TCGA-HU-A4GT-01 1 90049465 90049465 A G LRRC8B Missense_Mutation p.Q419R 0.09 tolerated(0.31) benign(0.058) TCGA-HU-A4GT-01 1 9073610 9073610 C T SLC2A7 Missense_Mutation p.V330I 0.37 tolerated(0.73) benign(0.127) TCGA-HU-A4GT-01 1 9073627 9073627 G A SLC2A7 Missense_Mutation p.T324M 0.32 deleterious(0) probably_damaging(0.994) TCGA-HU-A4GT-01 1 91788662 91788662 C T HFM1 Missense_Mutation p.R841Q 0.39 deleterious(0.05) benign(0.087) TCGA-HU-A4GT-01 1 93306110 93306112 GGA - RPL5 In_Frame_Del p.E238del 0.30 TCGA-HU-A4GT-01 1 94639400 94639400 A - ARHGAP29 3'UTR 0.19 TCGA-HU-A4GT-01 1 95363495 95363495 G A CNN3 Missense_Mutation p.R265W 0.11 tolerated(0.05) benign(0.219) TCGA-HU-A4GT-01 1 979279 979279 C - AGRN Frame_Shift_Del p.P627Rfs*105 0.25 TCGA-HU-A4GT-01 20 10026254 10026254 C T ANKEF1 Silent p.D243D 0.34 TCGA-HU-A4GT-01 20 16712392 16712392 T C SNRPB2 Silent p.N15N 0.42 TCGA-HU-A4GT-01 20 18143317 18143317 G A CSRP2BP Missense_Mutation p.E467K 0.36 deleterious(0) possibly_damaging(0.893) TCGA-HU-A4GT-01 20 20278851 20278851 G A C20orf26 Silent p.A1081A 0.37 TCGA-HU-A4GT-01 20 21689866 21689866 T C PAX1 Missense_Mutation p.S356P 0.23 tolerated_low_confidence(0.21) benign(0.008) TCGA-HU-A4GT-01 20 23064957 23064957 C T CD93 Missense_Mutation p.A625T 0.34 tolerated(0.48) benign(0.06) TCGA-HU-A4GT-01 20 23350276 23350276 C A GZF1 Silent p.A561A 0.34 TCGA-HU-A4GT-01 20 25259726 25259726 C A PYGB Missense_Mutation p.L345I 0.29 tolerated(0.68) possibly_damaging(0.636) TCGA-HU-A4GT-01 20 25275487 25275487 G A ABHD12 3'UTR 0.47 TCGA-HU-A4GT-01 20 25457303 25457303 G C NINL Missense_Mutation p.A875G 0.33 tolerated(0.39) benign(0.084) TCGA-HU-A4GT-01 20 25457469 25457469 G A NINL Missense_Mutation p.P820S 0.27 deleterious(0.01) benign(0) TCGA-HU-A4GT-01 20 25657323 25657324 - T ZNF337 Frame_Shift_Ins p.A201Sfs*18 0.32 TCGA-HU-A4GT-01 20 2639164 2639164 C T IDH3B 3'UTR 0.41 TCGA-HU-A4GT-01 20 2967446 2967446 T A PTPRA Missense_Mutation p.S160T 0.14 deleterious(0.05) possibly_damaging(0.524) TCGA-HU-A4GT-01 20 30745748 30745748 G A TM9SF4 Missense_Mutation p.R494Q 0.39 tolerated(0.48) benign(0.069) TCGA-HU-A4GT-01 20 3127716 3127717 - C FASTKD5 Frame_Shift_Ins p.F668Lfs*8 0.26 TCGA-HU-A4GT-01 20 31387079 31387079 C T DNMT3B Silent p.P568P 0.28 TCGA-HU-A4GT-01 20 3211287 3211287 C T SLC4A11 Missense_Mutation p.R473H 0.38 tolerated(0.37) benign(0.105) TCGA-HU-A4GT-01 20 32379191 32379191 G A ZNF341 Silent p.A804A 0.38 TCGA-HU-A4GT-01 20 32856834 32856834 C - ASIP Frame_Shift_Del p.L89Yfs*? 0.32 TCGA-HU-A4GT-01 20 34144042 34144042 G T ERGIC3 Missense_Mutation p.E298D 0.23 tolerated(0.27) benign(0.042) TCGA-HU-A4GT-01 20 34451082 34451082 C T PHF20 Nonsense_Mutation p.R190* 0.36 TCGA-HU-A4GT-01 20 34761845 34761845 C A EPB41L1 Missense_Mutation p.P49Q 0.29 tolerated(0.35) benign(0.013) TCGA-HU-A4GT-01 20 35155282 35155282 G A DLGAP4 Missense_Mutation p.D940N 0.41 deleterious(0) probably_damaging(0.995) TCGA-HU-A4GT-01 20 35431359 35431359 C T SOGA1 Missense_Mutation p.R1080H 0.60 tolerated(0.07) benign(0.008) TCGA-HU-A4GT-01 20 35757443 35757443 C T MROH8 Missense_Mutation p.A620T 0.10 tolerated(0.11) probably_damaging(0.999) TCGA-HU-A4GT-01 20 37179846 37179846 C T RALGAPB Missense_Mutation p.H1048Y 0.31 deleterious(0.01) possibly_damaging(0.862) TCGA-HU-A4GT-01 20 37353656 37353656 G A SLC32A1 Missense_Mutation p.G97S 0.30 tolerated(0.45) benign(0) TCGA-HU-A4GT-01 20 3736176 3736176 G A C20orf27 Missense_Mutation p.R106C 0.35 tolerated(0.12) benign(0.002) TCGA-HU-A4GT-01 20 3766612 3766612 G A CENPB Silent p.R173R 0.48 TCGA-HU-A4GT-01 20 39317075 39317075 G T MAFB Missense_Mutation p.P139H 0.11 tolerated(0.35) benign(0.001) TCGA-HU-A4GT-01 20 40080570 40080570 T C CHD6 Missense_Mutation p.Y1140C 0.31 deleterious(0) probably_damaging(0.995) TCGA-HU-A4GT-01 20 42086773 42086773 A - SRSF6 Frame_Shift_Del p.N35Mfs*21 0.18 TCGA-HU-A4GT-01 20 42338651 42338651 G T MYBL2 Silent p.T518T 0.21 TCGA-HU-A4GT-01 20 42744342 42744342 G A JPH2 Missense_Mutation p.A658V 0.18 tolerated(0.13) benign(0) TCGA-HU-A4GT-01 20 43249743 43249743 C T ADA Silent p.P297P 0.40 TCGA-HU-A4GT-01 20 43727277 43727277 G A KCNS1 Missense_Mutation p.R46W 0.33 deleterious(0) benign(0.332) TCGA-HU-A4GT-01 20 44472181 44472181 C T ACOT8 Missense_Mutation p.E276K 0.29 deleterious(0.01) possibly_damaging(0.57) TCGA-HU-A4GT-01 20 44641953 44641953 C - MMP9 Frame_Shift_Del p.P465Rfs*45 0.28 TCGA-HU-A4GT-01 20 44642368 44642368 C T MMP9 Silent p.P561P 0.43 TCGA-HU-A4GT-01 20 44676687 44676687 C T SLC12A5 Missense_Mutation p.R682C 0.40 deleterious(0) probably_damaging(0.977) TCGA-HU-A4GT-01 20 44681755 44681755 G A SLC12A5 Missense_Mutation p.R869Q 0.22 tolerated(0.05) benign(0.023) TCGA-HU-A4GT-01 20 44755294 44755294 C - CD40 Frame_Shift_Del p.L172Wfs*21 0.26 TCGA-HU-A4GT-01 20 47741096 47741096 A G STAU1 Missense_Mutation p.M213T 0.23 deleterious(0) probably_damaging(0.995) TCGA-HU-A4GT-01 20 48472028 48472028 T C SLC9A8 Missense_Mutation p.I224T 0.29 deleterious(0) probably_damaging(0.986) TCGA-HU-A4GT-01 20 50769393 50769393 C T ZFP64 Silent p.Q446Q 0.37 TCGA-HU-A4GT-01 20 52199147 52199147 G T ZNF217 Silent p.T73T 0.20 TCGA-HU-A4GT-01 20 54823856 54823856 G A MC3R 5'UTR 0.08 TCGA-HU-A4GT-01 20 55059189 55059189 G A RTFDC1 Missense_Mutation p.G141S 0.35 deleterious(0) probably_damaging(0.997) TCGA-HU-A4GT-01 20 55803316 55803316 C T BMP7 Missense_Mutation p.V194I 0.06 tolerated(0.63) benign(0.062) TCGA-HU-A4GT-01 20 56099337 56099337 G - CTCFL Intron 0.17 TCGA-HU-A4GT-01 20 57290264 57290264 C T NPEPL1 Missense_Mutation p.A485V 0.30 tolerated(0.19) benign(0.015) TCGA-HU-A4GT-01 20 5925451 5925451 C A TRMT6 Missense_Mutation p.E122D 0.13 deleterious(0.02) possibly_damaging(0.457) TCGA-HU-A4GT-01 20 60881312 60881312 C T ADRM1 Silent p.N130N 0.40 TCGA-HU-A4GT-01 20 60966352 60966352 T C CABLES2 Missense_Mutation p.K417E 0.21 deleterious(0.02) probably_damaging(1) TCGA-HU-A4GT-01 20 61526496 61526496 G A DIDO1 Missense_Mutation p.R746C 0.33 probably_damaging(1) TCGA-HU-A4GT-01 20 62153137 62153137 T C PPDPF Missense_Mutation p.S84P 0.28 tolerated(0.18) benign(0.027) TCGA-HU-A4GT-01 20 62366642 62366642 C - ZGPAT Frame_Shift_Del p.R397Gfs*34 0.26 TCGA-HU-A4GT-01 20 9401986 9401986 T C PLCB4 Missense_Mutation p.Y721H 0.20 deleterious(0) probably_damaging(1) TCGA-HU-A4GT-01 21 30378685 30378685 A - RWDD2B 3'UTR 0.39 TCGA-HU-A4GT-01 21 31691941 31691941 C T KRTAP26-1 Missense_Mutation p.C138Y 0.38 tolerated(0.06) probably_damaging(0.969) TCGA-HU-A4GT-01 21 31988810 31988810 T C KRTAP20-1 Missense_Mutation p.Y13H 0.22 unknown(0) TCGA-HU-A4GT-01 21 32119422 32119422 G T KRTAP21-2 Nonsense_Mutation p.Y33* 0.34 TCGA-HU-A4GT-01 21 33043606 33043606 G A SCAF4 3'UTR 0.33 TCGA-HU-A4GT-01 21 33058000 33058000 G A SCAF4 Missense_Mutation p.P697L 0.37 unknown(0) TCGA-HU-A4GT-01 21 34029062 34029062 A - SYNJ1 Frame_Shift_Del p.F949Lfs*5 0.21 TCGA-HU-A4GT-01 21 41414452 41414452 C T DSCAM Silent p.S1844S 0.41 TCGA-HU-A4GT-01 21 42824610 42824610 C T MX1 Silent p.H524H 0.38 TCGA-HU-A4GT-01 21 43161183 43161183 T C RIPK4 Missense_Mutation p.S724G 0.09 tolerated(0.36) benign(0.005) TCGA-HU-A4GT-01 21 43222998 43222998 C T PRDM15 Silent p.K1305K 0.05 TCGA-HU-A4GT-01 21 43733676 43733677 - G TFF3 Frame_Shift_Ins p.K64Qfs*11 0.22 TCGA-HU-A4GT-01 21 44484071 44484071 C T CBS Missense_Mutation p.G256D 0.42 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GT-01 21 45096710 45096710 A - RRP1B Frame_Shift_Del p.V239Wfs*18 0.07 TCGA-HU-A4GT-01 21 45540377 45540377 G T PWP2 Missense_Mutation p.R446M 0.37 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GT-01 21 46011355 46011355 C T KRTAP10-6 Silent p.T337T 0.07 TCGA-HU-A4GT-01 21 46117397 46117397 G A KRTAP10-12 Missense_Mutation p.C94Y 0.11 deleterious(0) unknown(0) TCGA-HU-A4GT-01 21 46207833 46207833 A G UBE2G2 Splice_Site p.X42_splice 0.26 TCGA-HU-A4GT-01 21 47361676 47361676 G A PCBP3 3'UTR 0.08 TCGA-HU-A4GT-01 21 47532203 47532203 G T COL6A2 Silent p.T142T 0.24 TCGA-HU-A4GT-01 21 47581388 47581388 C T SPATC1L Missense_Mutation p.V310M 0.30 tolerated(0.12) possibly_damaging(0.793) TCGA-HU-A4GT-01 21 47831672 47831673 - T PCNT Frame_Shift_Ins p.L1896Ffs*92 0.28 TCGA-HU-A4GT-01 21 47966845 47966845 C T DIP2A Silent p.I804I 0.21 TCGA-HU-A4GT-01 22 20759744 20759744 C T ZNF74 Missense_Mutation p.R141W 0.39 tolerated(0.06) benign(0) TCGA-HU-A4GT-01 22 20760486 20760486 A G ZNF74 Missense_Mutation p.Y388C 0.24 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GT-01 22 20819706 20819706 C T KLHL22 Missense_Mutation p.R184Q 0.42 tolerated(0.14) benign(0.059) TCGA-HU-A4GT-01 22 21098980 21098980 C T PI4KA Missense_Mutation p.C1131Y 0.30 deleterious(0.02) benign(0.41) TCGA-HU-A4GT-01 22 22599237 22599237 T A VPREB1 Silent p.A4A 0.34 TCGA-HU-A4GT-01 22 23523816 23523816 G - BCR Frame_Shift_Del p.D225Mfs*27 0.21 TCGA-HU-A4GT-01 22 24313795 24313795 A - DDT Frame_Shift_Del p.F101Sfs*11 0.25 TCGA-HU-A4GT-01 22 24726351 24726351 A - SPECC1L Frame_Shift_Del p.N785Mfs*11 0.24 TCGA-HU-A4GT-01 22 24759282 24759282 C T SPECC1L Missense_Mutation p.P933S 0.30 tolerated(0.19) benign(0.003) TCGA-HU-A4GT-01 22 26890245 26890245 C T TFIP11 Missense_Mutation p.S673N 0.17 tolerated(0.36) benign(0.001) TCGA-HU-A4GT-01 22 27019233 27019233 G A CRYBA4 Silent p.R25R 0.07 TCGA-HU-A4GT-01 22 28193520 28193520 C T MN1 Silent p.A1004A 0.25 TCGA-HU-A4GT-01 22 29454659 29454659 G A C22orf31 3'Flank 0.38 TCGA-HU-A4GT-01 22 29694762 29694762 G A EWSR1 Missense_Mutation p.R491H 0.39 tolerated(0.31) unknown(0) TCGA-HU-A4GT-01 22 29759048 29759048 T C AP1B1 Missense_Mutation p.K29E 0.07 tolerated(0.22) benign(0.039) TCGA-HU-A4GT-01 22 30951410 30951410 A G GAL3ST1 Missense_Mutation p.W268R 0.20 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GT-01 22 31487145 31487145 G A SMTN Missense_Mutation p.S379N 0.41 tolerated(0.2) benign(0.002) TCGA-HU-A4GT-01 22 31741294 31741294 C G PATZ1 Missense_Mutation p.G99R 0.10 deleterious_low_confidence(0.02) benign(0.033) TCGA-HU-A4GT-01 22 33255323 33255324 - C TIMP3 Frame_Shift_Ins p.D202Gfs*2 0.45 TCGA-HU-A4GT-01 22 34157424 34157424 C T LARGE Missense_Mutation p.A14T 0.28 deleterious_low_confidence(0.02) possibly_damaging(0.606) TCGA-HU-A4GT-01 22 35659156 35659156 T - HMGXB4 Frame_Shift_Del p.L41* 0.22 TCGA-HU-A4GT-01 22 37260993 37260993 A G NCF4 Silent p.G50G 0.38 TCGA-HU-A4GT-01 22 37770940 37770940 C T ELFN2 Missense_Mutation p.R212H 0.44 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GT-01 22 38211780 38211780 G A GCAT Missense_Mutation p.A335T 0.39 deleterious(0.03) benign(0.256) TCGA-HU-A4GT-01 22 38234581 38234581 G A ANKRD54 Missense_Mutation p.A134V 0.33 tolerated(1) benign(0.002) TCGA-HU-A4GT-01 22 38823103 38823103 C T KCNJ4 Silent p.T345T 0.32 TCGA-HU-A4GT-01 22 38875728 38875728 T G KDELR3 Missense_Mutation p.L108R 0.07 deleterious(0.02) benign(0.348) TCGA-HU-A4GT-01 22 39884006 39884006 C T MGAT3 Silent p.F218F 0.33 TCGA-HU-A4GT-01 22 40658006 40658006 C T TNRC6B Missense_Mutation p.R96C 0.17 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GT-01 22 40681739 40681739 C T TNRC6B Missense_Mutation p.R1225W 0.35 deleterious(0) probably_damaging(0.976) TCGA-HU-A4GT-01 22 41652064 41652064 A G RANGAP1 Missense_Mutation p.L345P 0.33 deleterious(0) possibly_damaging(0.756) TCGA-HU-A4GT-01 22 42606574 42606575 - T TCF20 Frame_Shift_Ins p.Q1580Tfs*32 0.39 TCGA-HU-A4GT-01 22 42610384 42610384 G T TCF20 Missense_Mutation p.Q310K 0.32 possibly_damaging(0.633) TCGA-HU-A4GT-01 22 43024235 43024235 T C CYB5R3 Missense_Mutation p.Q162R 0.05 deleterious(0) probably_damaging(0.985) TCGA-HU-A4GT-01 22 45599792 45599792 C T KIAA0930 Silent p.T202T 0.39 TCGA-HU-A4GT-01 22 45809407 45809407 C T SMC1B Silent p.S14S 0.17 TCGA-HU-A4GT-01 22 50277809 50277809 A G ZBED4 Missense_Mutation p.T167A 0.31 tolerated(0.17) benign(0.014) TCGA-HU-A4GT-01 22 50312881 50312881 A G CRELD2 Missense_Mutation p.M45V 0.23 deleterious(0.01) benign(0.197) TCGA-HU-A4GT-01 22 50721829 50721830 - C PLXNB2 Frame_Shift_Ins p.V873Cfs*66 0.25 TCGA-HU-A4GT-01 22 50875968 50875968 G A PPP6R2 Missense_Mutation p.A547T 0.27 deleterious(0.02) probably_damaging(0.992) TCGA-HU-A4GT-01 22 51065609 51065609 C T ARSA Silent p.P150P 0.30 TCGA-HU-A4GT-01 2 101644789 101644789 C T TBC1D8 Silent p.S761S 0.31 TCGA-HU-A4GT-01 2 102626108 102626108 C A IL1R2 Missense_Mutation p.P51H 0.40 deleterious(0) probably_damaging(1) TCGA-HU-A4GT-01 2 105858772 105858772 G A GPR45 Missense_Mutation p.A153T 0.45 deleterious(0.05) possibly_damaging(0.625) TCGA-HU-A4GT-01 2 106690423 106690423 G A C2orf40 Missense_Mutation p.R70Q 0.20 deleterious(0.01) probably_damaging(0.996) TCGA-HU-A4GT-01 2 108994925 108994925 G T SULT1C4 Missense_Mutation p.K44N 0.11 deleterious(0.02) benign(0.41) TCGA-HU-A4GT-01 2 11922594 11922594 C A LPIN1 Missense_Mutation p.Q458K 0.18 tolerated(0.9) benign(0.009) TCGA-HU-A4GT-01 2 130929950 130929950 C T SMPD4 Missense_Mutation p.G250R 0.17 tolerated(0.12) probably_damaging(0.991) TCGA-HU-A4GT-01 2 131117217 131117217 C T PTPN18 Missense_Mutation p.R138W 0.25 deleterious(0) benign(0.071) TCGA-HU-A4GT-01 2 136614396 136614396 A G MCM6 Missense_Mutation p.Y510H 0.19 deleterious(0) probably_damaging(1) TCGA-HU-A4GT-01 2 137928415 137928415 C A THSD7B Silent p.R544R 0.42 TCGA-HU-A4GT-01 2 148683686 148683686 A - ACVR2A Frame_Shift_Del p.K437Rfs*5 0.66 TCGA-HU-A4GT-01 2 149240905 149240905 C - MBD5 Frame_Shift_Del p.S917Afs*12 0.16 TCGA-HU-A4GT-01 2 150294262 150294262 A C LYPD6 Missense_Mutation p.S14R 0.37 tolerated(0.45) benign(0.26) TCGA-HU-A4GT-01 2 152285396 152285396 T C RIF1 Silent p.I295I 0.33 TCGA-HU-A4GT-01 2 152319553 152319553 A - RIF1 Frame_Shift_Del p.A1176Lfs*2 0.18 TCGA-HU-A4GT-01 2 152482131 152482131 C T NEB Missense_Mutation p.D3457N 0.39 benign(0.069) TCGA-HU-A4GT-01 2 152497119 152497119 C T NEB Missense_Mutation p.R2812H 0.38 benign(0.002) TCGA-HU-A4GT-01 2 153575445 153575445 C T ARL6IP6 Missense_Mutation p.R103W 0.20 deleterious(0) possibly_damaging(0.855) TCGA-HU-A4GT-01 2 158115793 158115793 C - GALNT5 Frame_Shift_Del p.S402Lfs*9 0.16 TCGA-HU-A4GT-01 2 160027229 160027229 G A TANC1 Missense_Mutation p.A422T 0.21 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GT-01 2 16082314 16082314 C - MYCN Frame_Shift_Del p.P45Rfs*86 0.32 TCGA-HU-A4GT-01 2 161051958 161051958 A G ITGB6 Missense_Mutation p.L172P 0.30 deleterious(0) probably_damaging(0.992) TCGA-HU-A4GT-01 2 162760684 162760684 G A SLC4A10 Missense_Mutation p.R538H 0.38 tolerated(0.3) probably_damaging(0.977) TCGA-HU-A4GT-01 2 163279956 163279956 G A KCNH7 Nonsense_Mutation p.R682* 0.11 TCGA-HU-A4GT-01 2 164466809 164466809 C T FIGN Silent p.A511A 0.20 TCGA-HU-A4GT-01 2 1652519 1652519 G A PXDN Silent p.G1011G 0.40 TCGA-HU-A4GT-01 2 167318977 167318977 A C SCN7A Missense_Mutation p.N335K 0.29 deleterious(0.02) possibly_damaging(0.825) TCGA-HU-A4GT-01 2 170371384 170371385 - A KLHL41 Frame_Shift_Ins p.L433Tfs*9 0.29 TCGA-HU-A4GT-01 2 170416934 170416934 C T FASTKD1 Missense_Mutation p.A312T 0.29 tolerated(0.44) benign(0.006) TCGA-HU-A4GT-01 2 170493804 170493804 A - PPIG Frame_Shift_Del p.K681Rfs*12 0.27 TCGA-HU-A4GT-01 2 172953126 172953126 G A DLX1 3'UTR 0.18 TCGA-HU-A4GT-01 2 174819995 174819995 A G SP3 Silent p.G415G 0.36 TCGA-HU-A4GT-01 2 175201908 175201908 C T AC018470.1 Missense_Mutation p.V82I 0.35 deleterious_low_confidence(0) unknown(0) TCGA-HU-A4GT-01 2 175318565 175318565 G A GPR155 Silent p.C592C 0.42 TCGA-HU-A4GT-01 2 176958067 176958067 C T HOXD13 Missense_Mutation p.A150V 0.35 deleterious(0.05) benign(0.097) TCGA-HU-A4GT-01 2 17698737 17698737 T - RAD51AP2 Frame_Shift_Del p.T316Lfs*2 0.13 TCGA-HU-A4GT-01 2 176995417 176995417 C - HOXD8 Frame_Shift_Del p.P110Lfs*67 0.37 TCGA-HU-A4GT-01 2 177016573 177016573 C T HOXD4 Missense_Mutation p.S71L 0.33 tolerated(0.19) benign(0.067) TCGA-HU-A4GT-01 2 178494009 178494009 A G PDE11A 3'UTR 0.38 TCGA-HU-A4GT-01 2 179421600 179421600 C T TTN Silent p.G29427G 0.32 TCGA-HU-A4GT-01 2 179474580 179474580 A C TTN Silent p.G17190G 0.06 TCGA-HU-A4GT-01 2 179485026 179485026 C T TTN Missense_Mutation p.A15408T 0.35 TCGA-HU-A4GT-01 2 179637974 179637974 T C TTN Missense_Mutation p.K2573E 0.21 TCGA-HU-A4GT-01 2 18112978 18112978 G A KCNS3 Missense_Mutation p.G235R 0.43 tolerated(0.08) benign(0.078) TCGA-HU-A4GT-01 2 182339713 182339713 A G ITGA4 Missense_Mutation p.K116E 0.17 deleterious(0) possibly_damaging(0.628) TCGA-HU-A4GT-01 2 182543576 182543576 C T NEUROD1 Silent p.S4S 0.36 TCGA-HU-A4GT-01 2 183829478 183829478 A G NCKAP1 Missense_Mutation p.S569P 0.41 tolerated(0.31) benign(0.009) TCGA-HU-A4GT-01 2 187501806 187501806 G A ITGAV Missense_Mutation p.V258I 0.35 deleterious(0.02) probably_damaging(0.999) TCGA-HU-A4GT-01 2 189927992 189927992 G A COL5A2 Missense_Mutation p.A592V 0.38 possibly_damaging(0.555) TCGA-HU-A4GT-01 2 1906994 1906994 C T MYT1L Silent p.P628P 0.32 TCGA-HU-A4GT-01 2 196837015 196837015 T A DNAH7 Missense_Mutation p.H670L 0.20 tolerated(0.13) possibly_damaging(0.477) TCGA-HU-A4GT-01 2 201683103 201683103 A G BZW1 Missense_Mutation p.D301G 0.29 tolerated(0.39) benign(0.001) TCGA-HU-A4GT-01 2 201862260 201862260 A G FAM126B Silent p.F178F 0.18 TCGA-HU-A4GT-01 2 202025304 202025304 C A CFLAR Silent p.R315R 0.39 TCGA-HU-A4GT-01 2 202737024 202737024 C T CDK15 Nonsense_Mutation p.R345* 0.21 TCGA-HU-A4GT-01 2 206628531 206628532 - G NRP2 Frame_Shift_Ins p.V728Gfs*21 0.29 TCGA-HU-A4GT-01 2 207027581 207027581 G A EEF1B2 Missense_Mutation p.D218N 0.15 deleterious(0) benign(0.158) TCGA-HU-A4GT-01 2 207834072 207834072 C T CPO Missense_Mutation p.A346V 0.35 tolerated(0.09) benign(0.055) TCGA-HU-A4GT-01 2 210889881 210889882 CT - KANSL1L Frame_Shift_Del p.E837Afs*22 0.27 TCGA-HU-A4GT-01 2 211512694 211512694 C T CPS1 Silent p.I1089I 0.27 TCGA-HU-A4GT-01 2 212426654 212426654 G T ERBB4 Missense_Mutation p.L821I 0.24 deleterious(0) possibly_damaging(0.815) TCGA-HU-A4GT-01 2 214727247 214727247 G A SPAG16 Missense_Mutation p.C370Y 0.36 deleterious(0.01) possibly_damaging(0.744) TCGA-HU-A4GT-01 2 219530916 219530916 T C RNF25 Missense_Mutation p.H132R 0.27 tolerated(0.07) probably_damaging(0.992) TCGA-HU-A4GT-01 2 219736502 219736502 C T WNT6 Silent p.R199R 0.55 TCGA-HU-A4GT-01 2 219738385 219738385 C T WNT6 Missense_Mutation p.R306C 0.40 deleterious(0.02) possibly_damaging(0.862) TCGA-HU-A4GT-01 2 219824884 219824884 C T CDK5R2 Silent p.G114G 0.39 TCGA-HU-A4GT-01 2 219900328 219900328 T C CCDC108 Missense_Mutation p.K139R 0.08 tolerated(0.06) benign(0.113) TCGA-HU-A4GT-01 2 220089143 220089143 G A ATG9A Missense_Mutation p.A317V 0.12 deleterious(0.05) benign(0.422) TCGA-HU-A4GT-01 2 220333585 220333585 C T SPEG Silent p.C1102C 0.42 TCGA-HU-A4GT-01 2 223917787 223917787 G - KCNE4 Frame_Shift_Del p.E82Rfs*3 0.09 TCGA-HU-A4GT-01 2 224822152 224822152 C T MRPL44 5'UTR 0.08 TCGA-HU-A4GT-01 2 227661671 227661672 - A IRS1 Frame_Shift_Ins p.R595Lfs*16 0.14 TCGA-HU-A4GT-01 2 228476166 228476166 T C C2orf83 Missense_Mutation p.K133E 0.41 deleterious_low_confidence(0) benign(0.292) TCGA-HU-A4GT-01 2 233194563 233194563 G T DIS3L2 Missense_Mutation p.A594S 0.40 deleterious(0.01) probably_damaging(0.992) TCGA-HU-A4GT-01 2 233347838 233347838 C T ECEL1 Missense_Mutation p.D520N 0.35 tolerated(0.12) benign(0.024) TCGA-HU-A4GT-01 2 234240330 234240330 G A SAG Missense_Mutation p.V260I 0.45 tolerated(0.31) benign(0.004) TCGA-HU-A4GT-01 2 236649676 236649677 - C AGAP1 Frame_Shift_Ins p.E130Gfs*20 0.21 TCGA-HU-A4GT-01 2 236839450 236839450 A G AGAP1 Missense_Mutation p.I456V 0.31 tolerated(1) benign(0.001) TCGA-HU-A4GT-01 2 239000019 239000019 A - SCLY Intron 0.23 TCGA-HU-A4GT-01 2 239079047 239079047 A - ILKAP 3'UTR 0.35 TCGA-HU-A4GT-01 2 240061463 240061463 C T HDAC4 Missense_Mutation p.G299R 0.24 deleterious(0) possibly_damaging(0.902) TCGA-HU-A4GT-01 2 241676582 241676582 C T KIF1A Missense_Mutation p.R1302H 0.36 deleterious(0) probably_damaging(0.988) TCGA-HU-A4GT-01 2 242054701 242054701 A G PASK Splice_Site p.X1066_splice 0.22 TCGA-HU-A4GT-01 2 242572918 242572918 C T THAP4 Missense_Mutation p.M218I 0.37 tolerated_low_confidence(0.32) benign(0.001) TCGA-HU-A4GT-01 2 242572945 242572945 G A THAP4 Silent p.G209G 0.09 TCGA-HU-A4GT-01 2 242680464 242680464 G A D2HGDH Silent p.L103L 0.31 TCGA-HU-A4GT-01 2 26152924 26152924 C T KIF3C Missense_Mutation p.S672N 0.26 benign(0) TCGA-HU-A4GT-01 2 26204576 26204576 C T KIF3C Missense_Mutation p.A71T 0.07 benign(0.004) TCGA-HU-A4GT-01 2 27121530 27121530 G T DPYSL5 Nonsense_Mutation p.G55* 0.34 TCGA-HU-A4GT-01 2 27306623 27306623 C T EMILIN1 Silent p.G728G 0.32 TCGA-HU-A4GT-01 2 27361028 27361028 C T C2orf53 Missense_Mutation p.R57H 0.28 tolerated(0.61) benign(0) TCGA-HU-A4GT-01 2 28631707 28631707 C T FOSL2 Missense_Mutation p.R146W 0.26 deleterious(0) probably_damaging(0.994) TCGA-HU-A4GT-01 2 33589401 33589401 T C LTBP1 Silent p.C1506C 0.17 TCGA-HU-A4GT-01 2 36726453 36726453 C T CRIM1 Silent p.R488R 0.09 TCGA-HU-A4GT-01 2 37035886 37035886 A G VIT Missense_Mutation p.Y554C 0.24 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GT-01 2 37076914 37076914 G T STRN Missense_Mutation p.L706I 0.09 deleterious(0) possibly_damaging(0.724) TCGA-HU-A4GT-01 2 43452622 43452623 - C ZFP36L2 Frame_Shift_Ins p.G108Rfs*18 0.31 TCGA-HU-A4GT-01 2 46985744 46985744 C T SOCS5 Silent p.S25S 0.39 TCGA-HU-A4GT-01 2 55746995 55746995 C A CCDC104 Missense_Mutation p.L20M 0.19 deleterious(0) probably_damaging(0.923) TCGA-HU-A4GT-01 2 65357064 65357064 C T RAB1A 5'UTR 0.25 TCGA-HU-A4GT-01 2 65540559 65540559 G - SPRED2 3'UTR 0.16 TCGA-HU-A4GT-01 2 71215664 71215664 C T TEX261 3'UTR 0.36 TCGA-HU-A4GT-01 2 74327911 74327911 C T TET3 Silent p.Y1197Y 0.47 TCGA-HU-A4GT-01 2 74596303 74596303 A G DCTN1 Silent p.S541S 0.18 TCGA-HU-A4GT-01 2 74717792 74717792 C T TTC31 Missense_Mutation p.R158C 0.56 deleterious(0.04) benign(0.007) TCGA-HU-A4GT-01 2 85049040 85049040 G A TRABD2A 3'UTR 0.24 TCGA-HU-A4GT-01 2 90044420 90044420 C T IGKV2D-24 Missense_Mutation p.T114M 0.10 tolerated(0.3) benign(0) TCGA-HU-A4GT-01 2 9017342 9017342 G A MBOAT2 Missense_Mutation p.R170C 0.32 deleterious(0.02) probably_damaging(0.957) TCGA-HU-A4GT-01 2 96940786 96940786 A G SNRNP200 Silent p.D2125D 0.36 TCGA-HU-A4GT-01 2 97278221 97278221 G A KANSL3 Missense_Mutation p.A331V 0.09 tolerated(0.12) benign(0.021) TCGA-HU-A4GT-01 2 99977673 99977674 - A EIF5B Frame_Shift_Ins p.Q106Tfs*4 0.18 TCGA-HU-A4GT-01 3 100029334 100029334 G A TBC1D23 Missense_Mutation p.V501I 0.34 deleterious(0.02) benign(0.147) TCGA-HU-A4GT-01 3 100354440 100354440 G A GPR128 Intron 0.21 TCGA-HU-A4GT-01 3 10426972 10426972 G A ATP2B2 Missense_Mutation p.A327V 0.33 tolerated(0.23) possibly_damaging(0.516) TCGA-HU-A4GT-01 3 107491997 107491997 C T BBX Nonsense_Mutation p.Q477* 0.34 TCGA-HU-A4GT-01 3 111898417 111898417 T C SLC9C1 Silent p.E960E 0.38 TCGA-HU-A4GT-01 3 113300284 113300284 C T SIDT1 Missense_Mutation p.T247M 0.38 deleterious(0) probably_damaging(0.996) TCGA-HU-A4GT-01 3 118621466 118621466 T C IGSF11 Silent p.P399P 0.10 TCGA-HU-A4GT-01 3 119367156 119367156 A G POPDC2 Silent p.P320P 0.23 TCGA-HU-A4GT-01 3 119445068 119445068 C T MAATS1 Missense_Mutation p.R245C 0.42 deleterious(0) probably_damaging(1) TCGA-HU-A4GT-01 3 119562108 119562108 C T GSK3B Missense_Mutation p.A410T 0.27 tolerated_low_confidence(0.14) benign(0.002) TCGA-HU-A4GT-01 3 121097669 121097669 A G STXBP5L Silent p.R785R 0.28 TCGA-HU-A4GT-01 3 121395738 121395738 A G GOLGB1 Splice_Site p.X3059_splice 0.23 TCGA-HU-A4GT-01 3 123010074 123010074 C T ADCY5 Silent p.A1071A 0.36 TCGA-HU-A4GT-01 3 125725966 125725966 C - SLC41A3 Frame_Shift_Del p.D453Tfs*36 0.26 TCGA-HU-A4GT-01 3 126735391 126735391 C - PLXNA1 Frame_Shift_Del p.Q1019Rfs*22 0.24 TCGA-HU-A4GT-01 3 127335861 127335861 C T MCM2 Missense_Mutation p.A558V 0.08 deleterious(0) probably_damaging(0.985) TCGA-HU-A4GT-01 3 127395216 127395216 C T ABTB1 Missense_Mutation p.A141V 0.43 deleterious(0.03) possibly_damaging(0.833) TCGA-HU-A4GT-01 3 129308232 129308232 C A PLXND1 Missense_Mutation p.A484S 0.15 deleterious(0) benign(0.328) TCGA-HU-A4GT-01 3 12977083 12977083 C T IQSEC1 Missense_Mutation p.R492H 0.39 tolerated(0.06) benign(0.315) TCGA-HU-A4GT-01 3 133358955 133358955 T C TOPBP1 Missense_Mutation p.H694R 0.35 deleterious(0) probably_damaging(1) TCGA-HU-A4GT-01 3 135720729 135720729 A - PPP2R3A Frame_Shift_Del p.K131Nfs*67 0.23 TCGA-HU-A4GT-01 3 138665127 138665127 G C FOXL2 Silent p.R146R 0.13 TCGA-HU-A4GT-01 3 141162564 141162564 C A ZBTB38 Missense_Mutation p.P445Q 0.40 tolerated(0.08) possibly_damaging(0.715) TCGA-HU-A4GT-01 3 141327450 141327450 T - RASA2 Frame_Shift_Del p.Y714Ifs*7 0.26 TCGA-HU-A4GT-01 3 142243013 142243013 C T ATR Missense_Mutation p.S1325N 0.08 tolerated(0.1) probably_damaging(0.938) TCGA-HU-A4GT-01 3 142443573 142443573 G A TRPC1 Missense_Mutation p.G58S 0.41 deleterious(0.03) probably_damaging(1) TCGA-HU-A4GT-01 3 142773863 142773863 G A U2SURP Silent p.S951S 0.50 TCGA-HU-A4GT-01 3 145822125 145822125 G T PLOD2 Missense_Mutation p.A207D 0.13 deleterious(0.02) benign(0.098) TCGA-HU-A4GT-01 3 148859112 148859112 C G HPS3 Silent p.V305V 0.25 TCGA-HU-A4GT-01 3 151163494 151163494 G A IGSF10 Silent p.A1425A 0.28 TCGA-HU-A4GT-01 3 156241698 156241698 C T KCNAB1 Missense_Mutation p.A348V 0.34 deleterious(0.03) possibly_damaging(0.675) TCGA-HU-A4GT-01 3 157155313 157155313 G A PTX3 Missense_Mutation p.A48T 0.21 tolerated(0.14) benign(0.006) TCGA-HU-A4GT-01 3 160132281 160132281 A C SMC4 Missense_Mutation p.K416N 0.20 deleterious(0.04) benign(0.106) TCGA-HU-A4GT-01 3 167223102 167223102 T - WDR49 Frame_Shift_Del p.K607Nfs*9 0.22 TCGA-HU-A4GT-01 3 168838939 168838939 C T MECOM Missense_Mutation p.R223Q 0.37 deleterious(0.03) probably_damaging(0.998) TCGA-HU-A4GT-01 3 170784061 170784061 C T TNIK Missense_Mutation p.R1305Q 0.37 deleterious(0) probably_damaging(0.995) TCGA-HU-A4GT-01 3 179095137 179095137 A G MFN1 Silent p.S410S 0.22 TCGA-HU-A4GT-01 3 182925470 182925470 C A MCF2L2 Missense_Mutation p.V880L 0.28 tolerated(1) benign(0.002) TCGA-HU-A4GT-01 3 183660654 183660654 A G ABCC5 Silent p.P1185P 0.18 TCGA-HU-A4GT-01 3 183824628 183824628 C T HTR3E 3'Flank 0.27 TCGA-HU-A4GT-01 3 183888273 183888273 G A DVL3 Silent p.P627P 0.46 TCGA-HU-A4GT-01 3 184020266 184020266 G A PSMD2 Missense_Mutation p.M271I 0.45 deleterious(0.04) benign(0.002) TCGA-HU-A4GT-01 3 184059617 184059617 C A FAM131A Intron 0.27 TCGA-HU-A4GT-01 3 186293717 186293717 T - DNAJB11 Frame_Shift_Del p.S107Hfs*30 0.22 TCGA-HU-A4GT-01 3 186299253 186299253 C T DNAJB11 Missense_Mutation p.R184C 0.38 tolerated(0.06) benign(0.038) TCGA-HU-A4GT-01 3 192980889 192980889 C - HRASLS Frame_Shift_Del p.P197Lfs*8 0.26 TCGA-HU-A4GT-01 3 19436626 19436626 C T KCNH8 Missense_Mutation p.R334C 0.38 deleterious(0) probably_damaging(1) TCGA-HU-A4GT-01 3 19479763 19479763 C A KCNH8 Missense_Mutation p.L429M 0.30 deleterious(0.02) probably_damaging(0.933) TCGA-HU-A4GT-01 3 19498410 19498410 A G KCNH8 Missense_Mutation p.H659R 0.38 tolerated(0.47) benign(0.33) TCGA-HU-A4GT-01 3 195495938 195495938 T C MUC4 Missense_Mutation p.D4495G 0.11 benign(0.213) TCGA-HU-A4GT-01 3 196533500 196533500 T G PAK2 Missense_Mutation p.D173E 0.21 tolerated(0.33) benign(0.001) TCGA-HU-A4GT-01 3 197427915 197427915 G - KIAA0226 Frame_Shift_Del p.P277Qfs*7 0.27 TCGA-HU-A4GT-01 3 20167584 20167584 T G KAT2B Missense_Mutation p.I534S 0.56 deleterious(0) probably_damaging(1) TCGA-HU-A4GT-01 3 33038574 33038574 G A GLB1 Missense_Mutation p.P666L 0.39 deleterious_low_confidence(0.03) benign(0.009) TCGA-HU-A4GT-01 3 35748505 35748505 A G ARPP21 Silent p.K242K 0.43 TCGA-HU-A4GT-01 3 38640527 38640527 C A SCN5A Missense_Mutation p.E635D 0.33 tolerated(0.37) benign(0.042) TCGA-HU-A4GT-01 3 39374911 39374912 - A CCR8 3'UTR 0.20 TCGA-HU-A4GT-01 3 45561788 45561788 G A LARS2 Silent p.S764S 0.39 TCGA-HU-A4GT-01 3 46940909 46940909 G T PTH1R Missense_Mutation p.E317D 0.46 tolerated(1) benign(0.023) TCGA-HU-A4GT-01 3 4709146 4709146 A G ITPR1 Missense_Mutation p.H585R 0.21 deleterious(0) probably_damaging(0.997) TCGA-HU-A4GT-01 3 47281502 47281502 A G KIF9 Intron 0.33 TCGA-HU-A4GT-01 3 47462067 47462067 G A SCAP Missense_Mutation p.R514C 0.38 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GT-01 3 48464342 48464342 A C PLXNB1 Silent p.A374A 0.26 TCGA-HU-A4GT-01 3 48699377 48699377 G - CELSR3 Frame_Shift_Del p.R231Gfs*77 0.29 TCGA-HU-A4GT-01 3 49159460 49159460 C T LAMB2 Missense_Mutation p.A1614T 0.18 tolerated(0.17) benign(0.03) TCGA-HU-A4GT-01 3 49568926 49568926 A G DAG1 Missense_Mutation p.T328A 0.07 deleterious(0.03) benign(0.02) TCGA-HU-A4GT-01 3 49692496 49692496 A T BSN Missense_Mutation p.E1836V 0.33 unknown(0) TCGA-HU-A4GT-01 3 49698680 49698680 C - BSN Frame_Shift_Del p.A3136Lfs*15 0.20 TCGA-HU-A4GT-01 3 49896836 49896836 C - CAMKV Frame_Shift_Del p.G474Afs*30 0.30 TCGA-HU-A4GT-01 3 50311902 50311902 G - LSMEM2 5'Flank 0.23 TCGA-HU-A4GT-01 3 50325851 50325851 G A IFRD2 Missense_Mutation p.R477C 0.28 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GT-01 3 50329820 50329820 C T IFRD2 Silent p.V26V 0.36 TCGA-HU-A4GT-01 3 50418199 50418199 G A CACNA2D2 Silent p.Y274Y 0.24 TCGA-HU-A4GT-01 3 51417604 51417604 C - DOCK3 Frame_Shift_Del p.P1852Qfs*45 0.36 TCGA-HU-A4GT-01 3 52402772 52402774 CTC - DNAH1 In_Frame_Del p.S1929del 0.38 TCGA-HU-A4GT-01 3 53898813 53898814 - C IL17RB Frame_Shift_Ins p.I332Hfs*2 0.27 TCGA-HU-A4GT-01 3 55504317 55504317 C T WNT5A Missense_Mutation p.G316S 0.48 deleterious(0) probably_damaging(1) TCGA-HU-A4GT-01 3 56681220 56681220 C T FAM208A Silent p.Q515Q 0.31 TCGA-HU-A4GT-01 3 57614576 57614578 CTA - DENND6A In_Frame_Del p.V552del 0.46 TCGA-HU-A4GT-01 3 58148890 58148890 C A FLNB Missense_Mutation p.A2375D 0.37 deleterious(0.01) probably_damaging(0.978) TCGA-HU-A4GT-01 3 62253484 62253484 A - PTPRG Frame_Shift_Del p.G957Efs*24 0.31 TCGA-HU-A4GT-01 3 64004573 64004573 A G PSMD6 Missense_Mutation p.L213P 0.19 deleterious(0) probably_damaging(1) TCGA-HU-A4GT-01 3 64145667 64145667 G A PRICKLE2 Silent p.R115R 0.36 TCGA-HU-A4GT-01 3 65342547 65342547 G A MAGI1 Missense_Mutation p.R1299W 0.08 deleterious(0) probably_damaging(0.971) TCGA-HU-A4GT-01 3 69026739 69026739 A G EOGT 3'UTR 0.33 TCGA-HU-A4GT-01 3 71015081 71015081 C T FOXP1 Missense_Mutation p.E619K 0.37 tolerated(0.13) benign(0.043) TCGA-HU-A4GT-01 3 73433940 73433940 C T PDZRN3 Missense_Mutation p.A593T 0.35 tolerated(0.55) benign(0.042) TCGA-HU-A4GT-01 3 74313501 74313501 T - CNTN3 3'UTR 0.23 TCGA-HU-A4GT-01 3 97614817 97614817 A G CRYBG3 Missense_Mutation p.E582G 0.37 deleterious(0.02) probably_damaging(0.986) TCGA-HU-A4GT-01 3 9799262 9799262 C T CAMK1 Silent p.P358P 0.12 TCGA-HU-A4GT-01 3 9859427 9859428 - A TTLL3 Frame_Shift_Ins p.A284Sfs*22 0.22 TCGA-HU-A4GT-01 4 100212106 100212106 G A ADH1A 5'UTR 0.46 TCGA-HU-A4GT-01 4 100496086 100496086 T - MTTP Frame_Shift_Del p.L9Sfs*20 0.19 TCGA-HU-A4GT-01 4 103228707 103228707 T A SLC39A8 Silent p.G146G 0.40 TCGA-HU-A4GT-01 4 106744429 106744429 T A GSTCD Nonsense_Mutation p.C466* 0.38 TCGA-HU-A4GT-01 4 109861694 109861694 C T COL25A1 Splice_Site p.X224_splice 0.26 TCGA-HU-A4GT-01 4 110452568 110452568 C T SEC24B Missense_Mutation p.R1094W 0.32 deleterious(0) probably_damaging(1) TCGA-HU-A4GT-01 4 110791079 110791080 - C LRIT3 Frame_Shift_Ins p.T394Hfs*67 0.22 TCGA-HU-A4GT-01 4 110908975 110908975 A G EGF Missense_Mutation p.Q856R 0.48 tolerated(0.18) benign(0.018) TCGA-HU-A4GT-01 4 111397807 111397807 G A ENPEP Silent p.P79P 0.10 TCGA-HU-A4GT-01 4 111464190 111464190 G A ENPEP Missense_Mutation p.R655H 0.33 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GT-01 4 111539810 111539810 T C PITX2 Missense_Mutation p.K149R 0.43 deleterious(0.01) probably_damaging(0.999) TCGA-HU-A4GT-01 4 119631419 119631419 C T METTL14 Missense_Mutation p.R445C 0.28 deleterious_low_confidence(0.02) unknown(0) TCGA-HU-A4GT-01 4 119951742 119951742 G A SYNPO2 Silent p.S604S 0.36 TCGA-HU-A4GT-01 4 122754483 122754483 A - BBS7 Frame_Shift_Del p.C527Vfs*15 0.23 TCGA-HU-A4GT-01 4 1244239 1244239 G A CTBP1 5'Flank 0.44 TCGA-HU-A4GT-01 4 126239830 126239830 A - FAT4 Frame_Shift_Del p.T757Qfs*7 0.09 TCGA-HU-A4GT-01 4 126241907 126241907 T C FAT4 Silent p.P1447P 0.42 TCGA-HU-A4GT-01 4 129920943 129920943 T - SCLT1 Frame_Shift_Del p.T145Lfs*25 0.09 TCGA-HU-A4GT-01 4 134071206 134071206 T - PCDH10 5'UTR 0.29 TCGA-HU-A4GT-01 4 134072933 134072933 G A PCDH10 Silent p.R546R 0.33 TCGA-HU-A4GT-01 4 140201256 140201256 G - MGARP Frame_Shift_Del p.N20Tfs*27 0.30 TCGA-HU-A4GT-01 4 140264085 140264086 - T NAA15 Frame_Shift_Ins p.L171Ffs*5 0.22 TCGA-HU-A4GT-01 4 141600843 141600843 T - TBC1D9 Frame_Shift_Del p.K172Rfs*33 0.20 TCGA-HU-A4GT-01 4 141832231 141832231 T - RNF150 Intron 0.38 TCGA-HU-A4GT-01 4 145636526 145636526 G T HHIP Missense_Mutation p.G541V 0.31 tolerated(0.16) possibly_damaging(0.771) TCGA-HU-A4GT-01 4 146686852 146686853 - G ZNF827 Frame_Shift_Ins p.S967Lfs*10 0.25 TCGA-HU-A4GT-01 4 147560292 147560294 GAT - POU4F2 Missense_Mutation p.M4del 0.28 TCGA-HU-A4GT-01 4 15628520 15628520 T A FBXL5 Missense_Mutation p.D367V 0.24 deleterious(0.03) possibly_damaging(0.461) TCGA-HU-A4GT-01 4 156717621 156717621 C A GUCY1B3 Nonsense_Mutation p.Y312* 0.33 TCGA-HU-A4GT-01 4 158233830 158233830 G T GRIA2 Splice_Site p.X157_splice 0.43 TCGA-HU-A4GT-01 4 159750300 159750302 AGC - FNIP2 In_Frame_Del p.S105del 0.26 TCGA-HU-A4GT-01 4 170641235 170641235 T - CLCN3 3'UTR 0.31 TCGA-HU-A4GT-01 4 175413228 175413228 T - HPGD Frame_Shift_Del p.N227Mfs*3 0.09 TCGA-HU-A4GT-01 4 177241221 177241221 G A SPCS3 5'UTR 0.39 TCGA-HU-A4GT-01 4 183721137 183721137 C T TENM3 Missense_Mutation p.T2578M 0.35 deleterious(0) probably_damaging(0.93) TCGA-HU-A4GT-01 4 184182199 184182199 A C WWC2 Missense_Mutation p.S475R 0.43 tolerated(0.34) benign(0.048) TCGA-HU-A4GT-01 4 187539004 187539004 G A FAT1 Silent p.N2912N 0.30 TCGA-HU-A4GT-01 4 1984935 1984935 G A NELFA 3'UTR 0.45 TCGA-HU-A4GT-01 4 2240395 2240395 G T HAUS3 Missense_Mutation p.P429T 0.31 tolerated(0.14) benign(0.237) TCGA-HU-A4GT-01 4 2240518 2240518 G A HAUS3 Nonsense_Mutation p.Q388* 0.23 TCGA-HU-A4GT-01 4 2698177 2698177 A - FAM193A Frame_Shift_Del p.M833Wfs*23 0.32 TCGA-HU-A4GT-01 4 2824766 2824766 T C SH3BP2 Splice_Site p.X137_splice 0.17 TCGA-HU-A4GT-01 4 2933848 2933848 C T MFSD10 Silent p.A242A 0.49 TCGA-HU-A4GT-01 4 30921914 30921914 C T PCDH7 Missense_Mutation p.A1105V 0.08 tolerated(0.16) possibly_damaging(0.811) TCGA-HU-A4GT-01 4 36115818 36115818 A G ARAP2 Missense_Mutation p.F1377S 0.37 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GT-01 4 44176881 44176881 T - KCTD8 Frame_Shift_Del p.I450Sfs*34 0.09 TCGA-HU-A4GT-01 4 44626737 44626737 A G YIPF7 Silent p.H187H 0.19 TCGA-HU-A4GT-01 4 48567646 48567646 T C FRYL Missense_Mutation p.S1078G 0.17 tolerated(0.07) probably_damaging(0.935) TCGA-HU-A4GT-01 4 52861931 52861931 C T LRRC66 Silent p.A419A 0.19 TCGA-HU-A4GT-01 4 55156584 55156584 C T PDGFRA Silent p.N995N 0.33 TCGA-HU-A4GT-01 4 5570350 5570350 C T EVC2 Silent p.S1126S 0.30 TCGA-HU-A4GT-01 4 5624286 5624286 G A EVC2 Missense_Mutation p.R827C 0.33 tolerated(0.11) benign(0.004) TCGA-HU-A4GT-01 4 56291672 56291672 G A TMEM165 3'UTR 0.42 TCGA-HU-A4GT-01 4 57514738 57514738 A - HOPX 3'UTR 0.47 TCGA-HU-A4GT-01 4 7043547 7043547 G A CCDC96 Silent p.S373S 0.44 TCGA-HU-A4GT-01 4 7056173 7056173 C T TADA2B Missense_Mutation p.R219W 0.39 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GT-01 4 77230676 77230676 C T FAM47E-STBD1 Silent p.H200H 0.07 TCGA-HU-A4GT-01 4 84028970 84028970 G A PLAC8 Silent p.S35S 0.27 TCGA-HU-A4GT-01 4 87684104 87684104 C T PTPN13 Nonsense_Mutation p.Q1260* 0.37 TCGA-HU-A4GT-01 4 89326076 89326076 C T HERC6 Nonsense_Mutation p.R381* 0.45 TCGA-HU-A4GT-01 4 89349778 89349778 A - HERC6 Frame_Shift_Del p.K663Rfs*27 0.23 TCGA-HU-A4GT-01 4 89588627 89588627 G T HERC3 Missense_Mutation p.M477I 0.36 tolerated(0.21) benign(0) TCGA-HU-A4GT-01 4 90830508 90830508 A C MMRN1 Missense_Mutation p.K235N 0.15 tolerated(0.18) benign(0.105) TCGA-HU-A4GT-01 4 99300202 99300202 T C RAP1GDS1 Silent p.G133G 0.31 TCGA-HU-A4GT-01 5 101834487 101834487 G A SLCO6A1 Missense_Mutation p.P21L 0.34 deleterious(0.01) benign(0.152) TCGA-HU-A4GT-01 5 102465389 102465389 T C PPIP5K2 Silent p.D32D 0.40 TCGA-HU-A4GT-01 5 108290522 108290522 A - FER Frame_Shift_Del p.K476Nfs*53 0.29 TCGA-HU-A4GT-01 5 108295005 108295005 T C FER Missense_Mutation p.I538T 0.40 deleterious(0.01) probably_damaging(0.996) TCGA-HU-A4GT-01 5 113698500 113698500 G A KCNN2 Missense_Mutation p.V10I 0.33 deleterious_low_confidence(0.03) benign(0.369) TCGA-HU-A4GT-01 5 114878823 114878823 G A FEM1C Missense_Mutation p.A123V 0.31 deleterious(0) probably_damaging(1) TCGA-HU-A4GT-01 5 115323514 115323514 G A AQPEP Missense_Mutation p.R328H 0.35 tolerated(0.07) possibly_damaging(0.545) TCGA-HU-A4GT-01 5 121187725 121187725 C T FTMT Missense_Mutation p.R23C 0.38 tolerated_low_confidence(0.09) benign(0.007) TCGA-HU-A4GT-01 5 132160980 132160980 T C SHROOM1 Missense_Mutation p.M285V 0.43 tolerated(0.3) benign(0) TCGA-HU-A4GT-01 5 132232258 132232258 A - AFF4 Frame_Shift_Del p.R689Gfs*28 0.13 TCGA-HU-A4GT-01 5 133481935 133481935 G A TCF7 Missense_Mutation p.G366S 0.41 tolerated(0.62) probably_damaging(0.972) TCGA-HU-A4GT-01 5 133871564 133871564 G A JADE2 Missense_Mutation p.R6Q 0.42 tolerated(0.07) probably_damaging(0.994) TCGA-HU-A4GT-01 5 134190673 134190673 C T C5orf24 Missense_Mutation p.A28V 0.33 deleterious_low_confidence(0.02) benign(0.167) TCGA-HU-A4GT-01 5 134910282 134910282 G A CXCL14 Silent p.N100N 0.46 TCGA-HU-A4GT-01 5 136403466 136403466 C T SPOCK1 Missense_Mutation p.C176Y 0.41 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GT-01 5 137802677 137802682 CCTCCG - EGR1 In_Frame_Del p.A184_S185del 0.27 TCGA-HU-A4GT-01 5 139193288 139193288 G - PSD2 Frame_Shift_Del p.D258Mfs*13 0.27 TCGA-HU-A4GT-01 5 139864752 139864752 G A ANKHD1 Silent p.V639V 0.32 TCGA-HU-A4GT-01 5 139941182 139941182 A C APBB3 Missense_Mutation p.L253R 0.23 deleterious(0.03) probably_damaging(0.999) TCGA-HU-A4GT-01 5 140167265 140167265 G A PCDHA1 Missense_Mutation p.V464M 0.07 deleterious_low_confidence(0.01) probably_damaging(0.952) TCGA-HU-A4GT-01 5 140201490 140201490 G A PCDHA5 Missense_Mutation p.V44I 0.22 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-HU-A4GT-01 5 140202694 140202694 C T PCDHA5 Missense_Mutation p.A445V 0.06 deleterious_low_confidence(0) possibly_damaging(0.684) TCGA-HU-A4GT-01 5 140222198 140222198 G A PCDHA8 Missense_Mutation p.G431D 0.40 deleterious_low_confidence(0) probably_damaging(0.913) TCGA-HU-A4GT-01 5 140230226 140230226 C T PCDHA9 Silent p.L716L 0.22 TCGA-HU-A4GT-01 5 140249805 140249805 G A PCDHA11 Missense_Mutation p.V373M 0.33 deleterious_low_confidence(0.01) probably_damaging(0.985) TCGA-HU-A4GT-01 5 140250611 140250611 G A PCDHA11 Silent p.S641S 0.07 TCGA-HU-A4GT-01 5 140263628 140263628 C T PCDHA13 Missense_Mutation p.A592V 0.06 deleterious_low_confidence(0.01) benign(0.167) TCGA-HU-A4GT-01 5 140474401 140474401 C T PCDHB2 Silent p.R9R 0.40 TCGA-HU-A4GT-01 5 140531688 140531688 C T PCDHB6 Missense_Mutation p.A617V 0.35 deleterious(0) benign(0.245) TCGA-HU-A4GT-01 5 140536946 140536946 A G PCDHB17 Missense_Mutation p.Y457C 0.15 deleterious_low_confidence(0) probably_damaging(1) TCGA-HU-A4GT-01 5 140558574 140558574 T C PCDHB8 Missense_Mutation p.I320T 0.06 deleterious_low_confidence(0.01) benign(0.106) TCGA-HU-A4GT-01 5 140590002 140590002 C T PCDHB12 Missense_Mutation p.A508V 0.34 deleterious_low_confidence(0.01) benign(0.114) TCGA-HU-A4GT-01 5 140604218 140604218 A C PCDHB14 Missense_Mutation p.M381L 0.16 deleterious_low_confidence(0.03) benign(0.091) TCGA-HU-A4GT-01 5 140710353 140710353 A G PCDHGA1 Silent p.S34S 0.18 TCGA-HU-A4GT-01 5 140720953 140720953 G A PCDHGA2 Silent p.T805T 0.48 TCGA-HU-A4GT-01 5 140723665 140723665 C T PCDHGA3 Missense_Mutation p.T22M 0.40 tolerated_low_confidence(0.17) benign(0.009) TCGA-HU-A4GT-01 5 140725605 140725605 C T PCDHGA3 Missense_Mutation p.P669S 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.712) TCGA-HU-A4GT-01 5 140725690 140725690 T C PCDHGA3 Missense_Mutation p.V697A 0.17 deleterious_low_confidence(0) possibly_damaging(0.717) TCGA-HU-A4GT-01 5 140725741 140725741 T A PCDHGA3 Missense_Mutation p.L714H 0.15 deleterious_low_confidence(0.02) benign(0.378) TCGA-HU-A4GT-01 5 140801232 140801232 C T PCDHGA11 Silent p.H146H 0.36 TCGA-HU-A4GT-01 5 140807735 140807735 C T PCDHGB6 Intron 0.21 TCGA-HU-A4GT-01 5 141384602 141384602 G A GNPDA1 Silent p.A163A 0.30 TCGA-HU-A4GT-01 5 14504592 14504592 C G TRIO Silent p.R2834R 0.34 TCGA-HU-A4GT-01 5 145883505 145883506 GA - TCERG1 Frame_Shift_Del p.E892Afs*17 0.14 TCGA-HU-A4GT-01 5 147821616 147821616 G A FBXO38 Missense_Mutation p.R1083H 0.29 deleterious(0.01) probably_damaging(0.997) TCGA-HU-A4GT-01 5 150310723 150310723 T - ZNF300P1 RNA 0.18 TCGA-HU-A4GT-01 5 150407589 150407589 A G GPX3 Missense_Mutation p.I193M 0.18 tolerated(0.06) benign(0.038) TCGA-HU-A4GT-01 5 150847485 150847485 A G SLC36A1 Missense_Mutation p.Q241R 0.46 tolerated(0.45) benign(0.049) TCGA-HU-A4GT-01 5 153857481 153857481 C T HAND1 Missense_Mutation p.G30S 0.25 tolerated(0.56) benign(0.003) TCGA-HU-A4GT-01 5 154065380 154065383 TTTA - MIR1303 RNA 0.21 TCGA-HU-A4GT-01 5 15937067 15937067 C T FBXL7 Silent p.S416S 0.43 TCGA-HU-A4GT-01 5 159992356 159992356 T C ATP10B 3'UTR 0.46 TCGA-HU-A4GT-01 5 161318019 161318019 G A GABRA1 Nonsense_Mutation p.W273* 0.41 TCGA-HU-A4GT-01 5 161324489 161324489 C T GABRA1 3'UTR 0.33 TCGA-HU-A4GT-01 5 167545304 167545304 C T TENM2 Silent p.C607C 0.27 TCGA-HU-A4GT-01 5 169267806 169267806 C T DOCK2 Missense_Mutation p.R917W 0.26 deleterious(0) probably_damaging(0.972) TCGA-HU-A4GT-01 5 169661119 169661119 T - C5orf58 5'UTR 0.26 TCGA-HU-A4GT-01 5 172517887 172517887 A - CREBRF Frame_Shift_Del p.K237Rfs*4 0.32 TCGA-HU-A4GT-01 5 177310670 177310670 G A RP11-423H2.1 Intron 0.24 TCGA-HU-A4GT-01 5 177420032 177420032 C T PROP1 Missense_Mutation p.R120H 0.18 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GT-01 5 177580799 177580799 T C NHP2 Missense_Mutation p.D7G 0.29 deleterious(0.05) benign(0.021) TCGA-HU-A4GT-01 5 178139580 178139580 A G ZNF354A Silent p.T433T 0.38 TCGA-HU-A4GT-01 5 178369753 178369753 A G ZNF454 5'UTR 0.10 TCGA-HU-A4GT-01 5 179132741 179132741 C T CANX Missense_Mutation p.A20V 0.34 tolerated(0.33) benign(0.132) TCGA-HU-A4GT-01 5 179260239 179260239 G A SQSTM1 Missense_Mutation p.R321H 0.40 tolerated(0.13) benign(0.001) TCGA-HU-A4GT-01 5 179762943 179762943 G A GFPT2 Silent p.S75S 0.15 TCGA-HU-A4GT-01 5 21751879 21751879 T G CDH12 Missense_Mutation p.E784D 0.34 tolerated(0.58) benign(0.014) TCGA-HU-A4GT-01 5 31322962 31322962 A - CDH6 Frame_Shift_Del p.E643Sfs*3 0.30 TCGA-HU-A4GT-01 5 32404161 32404161 T - ZFR Frame_Shift_Del p.E359Kfs*4 0.38 TCGA-HU-A4GT-01 5 3599615 3599615 C T IRX1 Missense_Mutation p.L185F 0.28 deleterious(0) probably_damaging(0.969) TCGA-HU-A4GT-01 5 41917429 41917429 A G C5orf51 3'UTR 0.19 TCGA-HU-A4GT-01 5 50679422 50679422 C T ISL1 5'UTR 0.53 TCGA-HU-A4GT-01 5 52899287 52899287 T C NDUFS4 Missense_Mutation p.L35S 0.19 deleterious(0.03) benign(0.075) TCGA-HU-A4GT-01 5 5306781 5306781 C - ADAMTS16 Frame_Shift_Del p.P1119Hfs*149 0.15 TCGA-HU-A4GT-01 5 5464737 5464737 C A KIAA0947 Silent p.R1764R 0.33 TCGA-HU-A4GT-01 5 56778406 56778407 - C ACTBL2 Frame_Shift_Ins p.V44Rfs*15 0.30 TCGA-HU-A4GT-01 5 637785 637785 G A CEP72 Missense_Mutation p.C353Y 0.32 tolerated(0.38) benign(0.006) TCGA-HU-A4GT-01 5 6746403 6746403 G T PAPD7 Missense_Mutation p.G191V 0.38 deleterious(0) probably_damaging(1) TCGA-HU-A4GT-01 5 72743584 72743584 C A FOXD1 Missense_Mutation p.D202Y 0.37 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-HU-A4GT-01 5 74324982 74324983 - G GCNT4 Frame_Shift_Ins p.H294Pfs*2 0.25 TCGA-HU-A4GT-01 5 75594678 75594678 C T SV2C Missense_Mutation p.T521I 0.30 tolerated(0.08) benign(0.002) TCGA-HU-A4GT-01 5 76171297 76171297 T C S100Z Missense_Mutation p.L38P 0.38 tolerated(0.07) possibly_damaging(0.521) TCGA-HU-A4GT-01 5 76376268 76376268 G A ZBED3 Intron 0.28 TCGA-HU-A4GT-01 5 76709128 76709128 A G PDE8B Silent p.R635R 0.29 TCGA-HU-A4GT-01 5 79028254 79028254 G T CMYA5 Missense_Mutation p.Q1222H 0.57 benign(0.276) TCGA-HU-A4GT-01 5 82815503 82815503 C T VCAN Missense_Mutation p.L460F 0.35 tolerated(0.86) benign(0.114) TCGA-HU-A4GT-01 5 89701581 89701581 T - CETN3 Frame_Shift_Del p.A64Lfs*4 0.19 TCGA-HU-A4GT-01 5 90087050 90087050 C T GPR98 Nonsense_Mutation p.R4802* 0.28 TCGA-HU-A4GT-01 5 90106235 90106235 A G GPR98 Missense_Mutation p.E5053G 0.35 probably_damaging(0.913) TCGA-HU-A4GT-01 5 94253672 94253672 C T MCTP1 Missense_Mutation p.G427S 0.50 tolerated_low_confidence(0.57) benign(0.001) TCGA-HU-A4GT-01 5 94620067 94620067 C - MCTP1 Frame_Shift_Del p.S72Vfs*62 0.30 TCGA-HU-A4GT-01 5 94901771 94901771 C T ARSK Missense_Mutation p.R66C 0.44 tolerated(0.15) possibly_damaging(0.773) TCGA-HU-A4GT-01 5 95011302 95011302 A G SPATA9 Silent p.A64A 0.33 TCGA-HU-A4GT-01 5 96065370 96065370 A - CAST Frame_Shift_Del p.A125Qfs*24 0.15 TCGA-HU-A4GT-01 6 100061025 100061025 C T PRDM13 Missense_Mutation p.H172Y 0.31 deleterious_low_confidence(0.01) benign(0.163) TCGA-HU-A4GT-01 6 111587480 111587480 T - KIAA1919 Frame_Shift_Del p.Y241Mfs*6 0.28 TCGA-HU-A4GT-01 6 111632452 111632452 C T REV3L Missense_Mutation p.R2872H 0.47 deleterious(0) possibly_damaging(0.665) TCGA-HU-A4GT-01 6 111726819 111726819 A - REV3L Frame_Shift_Del p.L140Cfs*6 0.28 TCGA-HU-A4GT-01 6 119238766 119238766 G A MCM9 Silent p.F288F 0.09 TCGA-HU-A4GT-01 6 12164369 12164370 - A HIVEP1 Frame_Shift_Ins p.V2614Sfs*10 0.43 TCGA-HU-A4GT-01 6 121769211 121769211 C G GJA1 3'UTR 0.26 TCGA-HU-A4GT-01 6 130467187 130467188 - T SAMD3 Frame_Shift_Ins p.M388Nfs*7 0.24 TCGA-HU-A4GT-01 6 131481276 131481276 A - AKAP7 Frame_Shift_Del p.K79Rfs*21 0.40 TCGA-HU-A4GT-01 6 131919846 131919846 T - MED23 Frame_Shift_Del p.N759Mfs*12 0.31 TCGA-HU-A4GT-01 6 132014691 132014691 C T ENPP3 Nonsense_Mutation p.R447* 0.28 TCGA-HU-A4GT-01 6 133005621 133005621 T C VNN1 Silent p.K404K 0.15 TCGA-HU-A4GT-01 6 13588582 13588583 - T SIRT5 Frame_Shift_Ins p.A48Cfs*15 0.31 TCGA-HU-A4GT-01 6 144184652 144184652 T A LTV1 Silent p.G472G 0.09 TCGA-HU-A4GT-01 6 146264833 146264834 - ATC SHPRH In_Frame_Ins p.D561dup 0.26 TCGA-HU-A4GT-01 6 146720131 146720131 T C GRM1 Silent p.P652P 0.05 TCGA-HU-A4GT-01 6 149953934 149953934 T C KATNA1 Missense_Mutation p.E94G 0.14 deleterious(0.03) benign(0.03) TCGA-HU-A4GT-01 6 150071036 150071036 C T PCMT1 Missense_Mutation p.A58V 0.59 tolerated(0.21) benign(0.012) TCGA-HU-A4GT-01 6 152676066 152676066 C T SYNE1 Missense_Mutation p.V3552M 0.29 benign(0.309) TCGA-HU-A4GT-01 6 152690137 152690137 A C SYNE1 Silent p.S3259S 0.40 TCGA-HU-A4GT-01 6 153296041 153296041 C A FBXO5 Splice_Site p.X273_splice 0.19 TCGA-HU-A4GT-01 6 159420643 159420643 G T RSPH3 Silent p.T122T 0.17 TCGA-HU-A4GT-01 6 160106066 160106066 C A SOD2 Splice_Site p.X115_splice 0.40 TCGA-HU-A4GT-01 6 160921912 160921912 C T LPAL2 RNA 0.38 TCGA-HU-A4GT-01 6 166952165 166952165 G T RPS6KA2 Silent p.S77S 0.30 TCGA-HU-A4GT-01 6 167416821 167416821 T - FGFR1OP Intron 0.64 TCGA-HU-A4GT-01 6 17292140 17292140 C T RBM24 Silent p.A167A 0.44 TCGA-HU-A4GT-01 6 17817374 17817374 C T KIF13A Missense_Mutation p.R626Q 0.41 tolerated(0.37) probably_damaging(0.997) TCGA-HU-A4GT-01 6 24436940 24436941 - G GPLD1 Frame_Shift_Ins p.L741Pfs*22 0.17 TCGA-HU-A4GT-01 6 24601407 24601407 T - KIAA0319 5'UTR 0.23 TCGA-HU-A4GT-01 6 25665221 25665221 C T SCGN Silent p.R99R 0.36 TCGA-HU-A4GT-01 6 26156601 26156601 C T HIST1H1E 5'UTR 0.41 TCGA-HU-A4GT-01 6 26413605 26413605 A - BTN3A1 Frame_Shift_Del p.I409Mfs*16 0.30 TCGA-HU-A4GT-01 6 26465489 26465489 C T BTN2A1 Silent p.A263A 0.32 TCGA-HU-A4GT-01 6 27218823 27218823 C - PRSS16 Frame_Shift_Del p.H200Ifs*30 0.19 TCGA-HU-A4GT-01 6 27418966 27418966 G C ZNF184 3'UTR 0.48 TCGA-HU-A4GT-01 6 2749454 2749454 A - MYLK4 Frame_Shift_Del p.Q26Sfs*9 0.25 TCGA-HU-A4GT-01 6 27834922 27834922 G A HIST1H1B Missense_Mutation p.A129V 0.08 deleterious(0.05) unknown(0) TCGA-HU-A4GT-01 6 2953378 2953378 A G SERPINB6 Missense_Mutation p.L158S 0.27 tolerated(0.4) benign(0.023) TCGA-HU-A4GT-01 6 29577082 29577082 C T GABBR1 Missense_Mutation p.V595I 0.46 tolerated(0.1) benign(0.028) TCGA-HU-A4GT-01 6 29641137 29641137 G A ZFP57 Missense_Mutation p.R251C 0.39 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GT-01 6 30658014 30658014 C T NRM Missense_Mutation p.R47H 0.27 tolerated(0.22) benign(0.006) TCGA-HU-A4GT-01 6 31097424 31097424 T C PSORS1C1 Splice_Site p.X5_splice 0.10 TCGA-HU-A4GT-01 6 31515484 31515485 - C NFKBIL1 Frame_Shift_Ins p.Q7Pfs*84 0.18 TCGA-HU-A4GT-01 6 32095986 32095986 T - ATF6B 5'UTR 0.10 TCGA-HU-A4GT-01 6 32169930 32169930 G A NOTCH4 Silent p.D1226D 0.08 TCGA-HU-A4GT-01 6 3225739 3225739 T - TUBB2B Frame_Shift_Del p.N195Tfs*21 0.39 TCGA-HU-A4GT-01 6 32904940 32904940 T C HLA-DMB Intron 0.22 TCGA-HU-A4GT-01 6 32945317 32945317 C T BRD2 Silent p.H433H 0.20 TCGA-HU-A4GT-01 6 33169607 33169607 G A SLC39A7 Missense_Mutation p.R166H 0.32 deleterious(0.02) benign(0.108) TCGA-HU-A4GT-01 6 33290756 33290756 T G DAXX 5'UTR 0.31 TCGA-HU-A4GT-01 6 33661475 33661475 T C ITPR3 Missense_Mutation p.M2593T 0.11 deleterious(0) possibly_damaging(0.899) TCGA-HU-A4GT-01 6 33746150 33746152 TCT - LEMD2 In_Frame_Del p.E341del 0.09 TCGA-HU-A4GT-01 6 34101300 34101300 C T GRM4 5'UTR 0.33 TCGA-HU-A4GT-01 6 35205683 35205683 C A SCUBE3 Silent p.T239T 0.35 TCGA-HU-A4GT-01 6 36291215 36291215 C T C6orf222 Silent p.A442A 0.30 TCGA-HU-A4GT-01 6 36465582 36465583 - A STK38 Frame_Shift_Ins p.E383* 0.33 TCGA-HU-A4GT-01 6 3727819 3727819 C A PXDC1 Missense_Mutation p.D182Y 0.10 deleterious_low_confidence(0.01) benign(0.319) TCGA-HU-A4GT-01 6 38670752 38670752 T C GLO1 Missense_Mutation p.T27A 0.33 deleterious(0.01) benign(0.094) TCGA-HU-A4GT-01 6 38791451 38791451 T C DNAH8 Silent p.L1061L 0.59 TCGA-HU-A4GT-01 6 39877590 39877590 C T MOCS1 Missense_Mutation p.R364Q 0.38 tolerated(0.29) benign(0.005) TCGA-HU-A4GT-01 6 398884 398884 G A IRF4 Missense_Mutation p.G232R 0.38 tolerated(0.54) possibly_damaging(0.563) TCGA-HU-A4GT-01 6 41121642 41121642 G A TREML1 Missense_Mutation p.T77M 0.45 tolerated(0.19) possibly_damaging(0.485) TCGA-HU-A4GT-01 6 41652349 41652349 G A TFEB Silent p.G473G 0.26 TCGA-HU-A4GT-01 6 42176060 42176060 T C MRPS10 Silent p.T191T 0.39 TCGA-HU-A4GT-01 6 43154719 43154719 C T CUL9 Missense_Mutation p.R425C 0.49 tolerated(0.09) probably_damaging(0.999) TCGA-HU-A4GT-01 6 43166454 43166454 C T CUL9 Silent p.L971L 0.08 TCGA-HU-A4GT-01 6 43403984 43403984 A G ABCC10 Missense_Mutation p.K625R 0.25 tolerated(0.1) benign(0.437) TCGA-HU-A4GT-01 6 45333006 45333006 A G SUPT3H 5'UTR 0.20 TCGA-HU-A4GT-01 6 45515026 45515026 T C RUNX2 Missense_Mutation p.V517A 0.08 deleterious(0) probably_damaging(0.996) TCGA-HU-A4GT-01 6 46802479 46802479 G A MEP1A Missense_Mutation p.D592N 0.32 tolerated(0.36) benign(0.12) TCGA-HU-A4GT-01 6 53364900 53364900 C T GCLC Missense_Mutation p.V549M 0.10 deleterious(0.02) probably_damaging(0.942) TCGA-HU-A4GT-01 6 54806576 54806576 G A FAM83B Missense_Mutation p.R936H 0.08 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GT-01 6 56468020 56468021 - A DST Intron 0.47 TCGA-HU-A4GT-01 6 57472369 57472369 C A PRIM2 3'UTR 0.12 TCGA-HU-A4GT-01 6 6266932 6266932 G A F13A1 Missense_Mutation p.R144W 0.45 deleterious(0.01) probably_damaging(0.965) TCGA-HU-A4GT-01 6 64415953 64415953 A - PHF3 Frame_Shift_Del p.V1137* 0.19 TCGA-HU-A4GT-01 6 6654835 6654835 C T LY86 Missense_Mutation p.A155V 0.31 deleterious(0.02) probably_damaging(0.999) TCGA-HU-A4GT-01 6 69349020 69349020 T - BAI3 Frame_Shift_Del p.F153Lfs*6 0.33 TCGA-HU-A4GT-01 6 71269576 71269577 - T FAM135A Frame_Shift_Ins p.L1502Ffs*17 0.36 TCGA-HU-A4GT-01 6 72011854 72011854 T C OGFRL1 3'UTR 0.42 TCGA-HU-A4GT-01 6 7247433 7247433 C T RREB1 Missense_Mutation p.R1584W 0.30 deleterious(0) probably_damaging(0.997) TCGA-HU-A4GT-01 6 72892670 72892670 A G RIMS1 Missense_Mutation p.D499G 0.25 deleterious(0.01) benign(0.103) TCGA-HU-A4GT-01 6 75831103 75831103 A G COL12A1 Missense_Mutation p.I2334T 0.52 probably_damaging(0.998) TCGA-HU-A4GT-01 6 75848669 75848669 G A COL12A1 Missense_Mutation p.P1656S 0.21 probably_damaging(1) TCGA-HU-A4GT-01 6 7585773 7585773 G A DSP Missense_Mutation p.A2760T 0.19 benign(0.024) TCGA-HU-A4GT-01 6 76024861 76024861 A G FILIP1 Silent p.N229N 0.32 TCGA-HU-A4GT-01 6 76369099 76369099 A - SENP6 Frame_Shift_Del p.K226Nfs*3 0.31 TCGA-HU-A4GT-01 6 78172447 78172447 A G HTR1B Missense_Mutation p.I225T 0.18 deleterious(0) possibly_damaging(0.643) TCGA-HU-A4GT-01 6 82459685 82459685 A G FAM46A Silent p.Y352Y 0.50 TCGA-HU-A4GT-01 6 84862599 84862600 - T KIAA1009 Frame_Shift_Ins p.R1099Efs*46 0.33 TCGA-HU-A4GT-01 6 84930881 84930881 A T KIAA1009 Missense_Mutation p.D22E 0.28 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GT-01 6 86324688 86324688 G A SYNCRIP Missense_Mutation p.A553V 0.05 deleterious_low_confidence(0.04) unknown(0) TCGA-HU-A4GT-01 6 87966824 87966824 A G ZNF292 Silent p.S1159S 0.43 TCGA-HU-A4GT-01 6 97620979 97620979 T - MMS22L Frame_Shift_Del p.V934Ffs*8 0.28 TCGA-HU-A4GT-01 6 99849343 99849343 T - PNISR Frame_Shift_Del p.E498Sfs*85 0.11 TCGA-HU-A4GT-01 7 100084511 100084511 G A NYAP1 Missense_Mutation p.V46M 0.25 deleterious(0.01) benign(0.359) TCGA-HU-A4GT-01 7 100212592 100212592 G A MOSPD3 Missense_Mutation p.S205N 0.23 tolerated(0.11) possibly_damaging(0.51) TCGA-HU-A4GT-01 7 100369551 100369551 A G ZAN Missense_Mutation p.D1778G 0.38 unknown(0) TCGA-HU-A4GT-01 7 100491090 100491090 C A ACHE Missense_Mutation p.R255M 0.49 deleterious(0) probably_damaging(0.997) TCGA-HU-A4GT-01 7 102087351 102087351 C A ORAI2 Missense_Mutation p.P206H 0.38 deleterious(0) probably_damaging(0.986) TCGA-HU-A4GT-01 7 102106383 102106383 G A LRWD1 Missense_Mutation p.G67D 0.41 tolerated(0.32) benign(0.392) TCGA-HU-A4GT-01 7 103123374 103123374 C T RELN Missense_Mutation p.R3409H 0.37 tolerated(0.14) probably_damaging(0.997) TCGA-HU-A4GT-01 7 103969331 103969331 C T LHFPL3 Missense_Mutation p.A35V 0.40 deleterious(0.01) benign(0.138) TCGA-HU-A4GT-01 7 106876963 106876963 G A COG5 Missense_Mutation p.R706C 0.24 deleterious(0.02) possibly_damaging(0.858) TCGA-HU-A4GT-01 7 112723847 112723847 A - GPR85 Frame_Shift_Del p.F310Lfs*6 0.25 TCGA-HU-A4GT-01 7 11445994 11445994 G A THSD7A Silent p.D1390D 0.20 TCGA-HU-A4GT-01 7 11464332 11464332 C T THSD7A Missense_Mutation p.R1125Q 0.29 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GT-01 7 115890281 115890281 T A TES Missense_Mutation p.Y145N 0.35 deleterious(0.05) probably_damaging(0.998) TCGA-HU-A4GT-01 7 120385856 120385856 A G KCND2 Missense_Mutation p.Q497R 0.38 tolerated_low_confidence(0.37) benign(0.005) TCGA-HU-A4GT-01 7 120971879 120971879 G - WNT16 Frame_Shift_Del p.G167Afs*17 0.28 TCGA-HU-A4GT-01 7 122342486 122342486 G A RNF148 Missense_Mutation p.R107C 0.43 deleterious(0) probably_damaging(0.963) TCGA-HU-A4GT-01 7 127251690 127251690 A G PAX4 Missense_Mutation p.L263P 0.19 tolerated(0.15) benign(0.001) TCGA-HU-A4GT-01 7 128658127 128658127 T - TNPO3 Frame_Shift_Del p.M69* 0.24 TCGA-HU-A4GT-01 7 136938377 136938377 T - PTN Frame_Shift_Del p.V42* 0.39 TCGA-HU-A4GT-01 7 138845785 138845785 C T TTC26 Intron 0.37 TCGA-HU-A4GT-01 7 140155024 140155024 C T MKRN1 Silent p.A369A 0.26 TCGA-HU-A4GT-01 7 140223218 140223218 C T DENND2A Missense_Mutation p.D852N 0.17 deleterious(0) probably_damaging(0.992) TCGA-HU-A4GT-01 7 143096420 143096420 C - EPHA1 Frame_Shift_Del p.A308Pfs*32 0.32 TCGA-HU-A4GT-01 7 144463016 144463018 AAG - TPK1 In_Frame_Del p.L24del 0.34 TCGA-HU-A4GT-01 7 148767912 148767912 C - ZNF786 Frame_Shift_Del p.C651Lfs*8 0.26 TCGA-HU-A4GT-01 7 149172551 149172551 T - ZNF746 Frame_Shift_Del p.T288Qfs*18 0.33 TCGA-HU-A4GT-01 7 149430469 149430469 C T KRBA1 Missense_Mutation p.A808V 0.13 deleterious(0) probably_damaging(0.971) TCGA-HU-A4GT-01 7 149509077 149509077 G A SSPO RNA 0.36 TCGA-HU-A4GT-01 7 149559064 149559064 G A ZNF862 Missense_Mutation p.D939N 0.37 tolerated(0.34) benign(0.01) TCGA-HU-A4GT-01 7 150069094 150069094 G A REPIN1 Missense_Mutation p.R312H 0.30 deleterious(0.01) probably_damaging(1) TCGA-HU-A4GT-01 7 150174636 150174636 G A GIMAP8 Missense_Mutation p.R589H 0.36 tolerated(0.11) benign(0.248) TCGA-HU-A4GT-01 7 150698665 150698665 A G NOS3 Missense_Mutation p.T488A 0.20 tolerated(0.71) benign(0.004) TCGA-HU-A4GT-01 7 150771577 150771577 T C SLC4A2 Splice_Site p.X960_splice 0.25 TCGA-HU-A4GT-01 7 150878271 150878271 C T ASB10 Missense_Mutation p.A287T 0.46 tolerated(0.21) benign(0.153) TCGA-HU-A4GT-01 7 150935382 150935383 - C CHPF2 Frame_Shift_Ins p.S648Lfs*6 0.33 TCGA-HU-A4GT-01 7 151884806 151884806 T C KMT2C Missense_Mutation p.D1596G 0.39 probably_damaging(0.945) TCGA-HU-A4GT-01 7 155537713 155537713 G A RBM33 Missense_Mutation p.R799H 0.33 deleterious(0) unknown(0) TCGA-HU-A4GT-01 7 15725656 15725656 C T MEOX2 Silent p.P124P 0.28 TCGA-HU-A4GT-01 7 158529777 158529777 G A ESYT2 Silent p.H814H 0.17 TCGA-HU-A4GT-01 7 1587535 1587535 C T TMEM184A Silent p.P285P 0.25 TCGA-HU-A4GT-01 7 19156656 19156656 C T TWIST1 Missense_Mutation p.G97S 0.36 tolerated(1) unknown(0) TCGA-HU-A4GT-01 7 20767944 20767944 C T ABCB5 Silent p.T911T 0.26 TCGA-HU-A4GT-01 7 20826480 20826480 T - SP8 5'UTR 0.21 TCGA-HU-A4GT-01 7 21805081 21805082 GA - DNAH11 Frame_Shift_Del p.R3000Sfs*2 0.26 TCGA-HU-A4GT-01 7 21985416 21985416 A G CDCA7L Silent p.L3L 0.10 TCGA-HU-A4GT-01 7 23352017 23352017 A T IGF2BP3 Silent p.A568A 0.26 TCGA-HU-A4GT-01 7 2577869 2577869 T C BRAT1 Missense_Mutation p.Q767R 0.12 tolerated(0.83) benign(0.177) TCGA-HU-A4GT-01 7 27140248 27140248 A C HOXA2 3'UTR 0.34 TCGA-HU-A4GT-01 7 30492472 30492472 G T NOD1 Silent p.T187T 0.39 TCGA-HU-A4GT-01 7 30492520 30492520 A G NOD1 Silent p.N171N 0.14 TCGA-HU-A4GT-01 7 30695543 30695543 C A CRHR2 Missense_Mutation p.R333M 0.06 deleterious(0) possibly_damaging(0.882) TCGA-HU-A4GT-01 7 31829827 31829827 T C PDE1C Intron 0.20 TCGA-HU-A4GT-01 7 35913333 35913333 C T SEPT7 Missense_Mutation p.P155S 0.35 tolerated(0.74) benign(0.139) TCGA-HU-A4GT-01 7 36193947 36193947 T C EEPD1 Missense_Mutation p.L5P 0.27 deleterious(0) possibly_damaging(0.513) TCGA-HU-A4GT-01 7 38370421 38370421 A G TRGV8 Translation_Start_Site p.M1? 0.33 deleterious(0) unknown(0) TCGA-HU-A4GT-01 7 4050672 4050672 G A SDK1 Missense_Mutation p.A736T 0.38 deleterious(0) possibly_damaging(0.778) TCGA-HU-A4GT-01 7 4169604 4169604 C T SDK1 Missense_Mutation p.T1335M 0.44 deleterious(0) probably_damaging(0.943) TCGA-HU-A4GT-01 7 41729727 41729727 C - INHBA Frame_Shift_Del p.E268Kfs*91 0.27 TCGA-HU-A4GT-01 7 43590143 43590143 C T HECW1 Missense_Mutation p.R1450C 0.32 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GT-01 7 43590149 43590149 G A HECW1 Missense_Mutation p.V1452M 0.35 deleterious(0.05) probably_damaging(0.926) TCGA-HU-A4GT-01 7 43843448 43843448 T C BLVRA Splice_Site p.X211_splice 0.19 TCGA-HU-A4GT-01 7 44713507 44713507 G A OGDH Missense_Mutation p.R252Q 0.38 deleterious(0.03) possibly_damaging(0.612) TCGA-HU-A4GT-01 7 4821214 4821214 C T AP5Z1 Silent p.C65C 0.16 TCGA-HU-A4GT-01 7 54610416 54610416 T - VSTM2A 5'UTR 0.08 TCGA-HU-A4GT-01 7 5541068 5541068 C T FBXL18 Missense_Mutation p.A278T 0.20 deleterious(0.02) benign(0.152) TCGA-HU-A4GT-01 7 5541070 5541070 C G FBXL18 Missense_Mutation p.G277A 0.20 tolerated(0.6) possibly_damaging(0.654) TCGA-HU-A4GT-01 7 5568907 5568915 TCCATGTCG - ACTB In_Frame_Del p.D80_M82del 0.40 TCGA-HU-A4GT-01 7 5963564 5963564 A - CCZ1 Frame_Shift_Del p.N457Mfs*4 0.21 TCGA-HU-A4GT-01 7 6193579 6193579 C T USP42 Silent p.P798P 0.25 TCGA-HU-A4GT-01 7 64151635 64151635 A G ZNF107 5'UTR 0.09 TCGA-HU-A4GT-01 7 64467055 64467055 C T ERV3-1 5'Flank 0.41 TCGA-HU-A4GT-01 7 65554148 65554148 C T ASL Missense_Mutation p.R302C 0.29 deleterious(0) probably_damaging(0.971) TCGA-HU-A4GT-01 7 66703392 66703392 G A TYW1 Missense_Mutation p.S692N 0.31 tolerated(0.23) benign(0.009) TCGA-HU-A4GT-01 7 70800673 70800674 - A WBSCR17 Frame_Shift_Ins p.I128Nfs*16 0.08 TCGA-HU-A4GT-01 7 73108001 73108001 T C WBSCR22 Splice_Site p.X214_splice 0.22 TCGA-HU-A4GT-01 7 73114706 73114706 A G STX1A 3'UTR 0.10 TCGA-HU-A4GT-01 7 73256349 73256349 T C WBSCR27 Missense_Mutation p.Q41R 0.42 deleterious(0.02) benign(0.077) TCGA-HU-A4GT-01 7 76909865 76909865 A G CCDC146 Missense_Mutation p.Q605R 0.20 tolerated(0.24) benign(0.029) TCGA-HU-A4GT-01 7 77764449 77764449 G A MAGI2 Missense_Mutation p.R974W 0.38 deleterious(0) probably_damaging(1) TCGA-HU-A4GT-01 7 83036496 83036496 C T SEMA3E Missense_Mutation p.V244I 0.37 tolerated(0.76) benign(0.007) TCGA-HU-A4GT-01 7 83119550 83119550 A G SEMA3E Silent p.P52P 0.30 TCGA-HU-A4GT-01 7 91645570 91645570 A T AKAP9 Missense_Mutation p.Y1247F 0.27 benign(0.002) TCGA-HU-A4GT-01 7 93516631 93516631 A G TFPI2 Silent p.C191C 0.29 TCGA-HU-A4GT-01 7 94038108 94038108 A G COL1A2 Silent p.P255P 0.24 TCGA-HU-A4GT-01 7 98550975 98550975 C G TRRAP Missense_Mutation p.D1876E 0.38 probably_damaging(0.999) TCGA-HU-A4GT-01 7 99032621 99032621 T C ATP5J2-PTCD1 Missense_Mutation p.D131G 0.28 tolerated(0.36) benign(0.009) TCGA-HU-A4GT-01 7 99769744 99769744 T C GPC2 Missense_Mutation p.Y330C 0.48 tolerated(0.09) probably_damaging(0.937) TCGA-HU-A4GT-01 8 100050671 100050671 T - VPS13B Frame_Shift_Del p.L58* 0.21 TCGA-HU-A4GT-01 8 100443829 100443829 T C VPS13B Silent p.P1049P 0.28 TCGA-HU-A4GT-01 8 100832310 100832310 A G VPS13B Missense_Mutation p.Q3010R 0.19 deleterious(0.02) benign(0.069) TCGA-HU-A4GT-01 8 101083648 101083648 A G RGS22 Silent p.T181T 0.14 TCGA-HU-A4GT-01 8 101300216 101300216 T - RNF19A Frame_Shift_Del p.R63Efs*5 0.24 TCGA-HU-A4GT-01 8 103663669 103663669 C T KLF10 Silent p.Q297Q 0.25 TCGA-HU-A4GT-01 8 105601124 105601124 A G LRP12 Translation_Start_Site p.M1? 0.30 deleterious_low_confidence(0) possibly_damaging(0.692) TCGA-HU-A4GT-01 8 110477216 110477216 G T PKHD1L1 Missense_Mutation p.G2719W 0.16 deleterious(0) probably_damaging(0.962) TCGA-HU-A4GT-01 8 110984793 110984793 G T KCNV1 Missense_Mutation p.L229M 0.12 deleterious(0) probably_damaging(0.996) TCGA-HU-A4GT-01 8 113301692 113301692 A G CSMD3 Missense_Mutation p.V3017A 0.22 deleterious(0.01) benign(0.268) TCGA-HU-A4GT-01 8 113569032 113569032 C A CSMD3 Silent p.G1398G 0.23 TCGA-HU-A4GT-01 8 114111065 114111065 A C CSMD3 Missense_Mutation p.I279M 0.21 deleterious(0) probably_damaging(0.953) TCGA-HU-A4GT-01 8 116599312 116599312 G A TRPS1 Silent p.G872G 0.20 TCGA-HU-A4GT-01 8 116599595 116599595 A G TRPS1 Missense_Mutation p.V778A 0.16 deleterious_low_confidence(0) benign(0.442) TCGA-HU-A4GT-01 8 11842012 11842012 A - DEFB135 Frame_Shift_Del p.N51Tfs*16 0.29 TCGA-HU-A4GT-01 8 11995922 11995922 T C USP17L2 Silent p.T116T 0.40 TCGA-HU-A4GT-01 8 120844892 120844892 C A TAF2 5'UTR 0.21 TCGA-HU-A4GT-01 8 121457558 121457558 A - MRPL13 5'UTR 0.16 TCGA-HU-A4GT-01 8 124089413 124089413 A C TBC1D31 Missense_Mutation p.N47T 0.19 deleterious(0.01) possibly_damaging(0.552) TCGA-HU-A4GT-01 8 124526525 124526525 C T FBXO32 Missense_Mutation p.A141T 0.15 deleterious(0.04) possibly_damaging(0.898) TCGA-HU-A4GT-01 8 126056870 126056870 G A KIAA0196 Missense_Mutation p.R859C 0.16 tolerated(0.06) possibly_damaging(0.806) TCGA-HU-A4GT-01 8 126448430 126448430 T C TRIB1 Missense_Mutation p.V279A 0.14 tolerated(0.39) possibly_damaging(0.475) TCGA-HU-A4GT-01 8 128428462 128428462 C - POU5F1B Frame_Shift_Del p.P119Lfs*4 0.20 TCGA-HU-A4GT-01 8 132051786 132051786 C A ADCY8 Missense_Mutation p.G265V 0.23 deleterious(0.01) probably_damaging(0.946) TCGA-HU-A4GT-01 8 133829724 133829724 A G PHF20L1 Missense_Mutation p.T505A 0.08 tolerated(0.8) benign(0.001) TCGA-HU-A4GT-01 8 134128894 134128894 C T TG Missense_Mutation p.A2599V 0.19 tolerated(0.29) benign(0.044) TCGA-HU-A4GT-01 8 134274294 134274294 C T NDRG1 Missense_Mutation p.A108T 0.23 tolerated(1) benign(0.003) TCGA-HU-A4GT-01 8 139164232 139164232 A C FAM135B Missense_Mutation p.L829R 0.08 tolerated_low_confidence(0.47) benign(0.235) TCGA-HU-A4GT-01 8 141524535 141524535 T C CHRAC1 Missense_Mutation p.L72P 0.23 deleterious(0) probably_damaging(1) TCGA-HU-A4GT-01 8 142446014 142446014 G A PTP4A3 3'Flank 0.15 TCGA-HU-A4GT-01 8 143623520 143623520 C A BAI1 Missense_Mutation p.L1309I 0.17 tolerated(0.09) benign(0.092) TCGA-HU-A4GT-01 8 143928051 143928051 T C GML Missense_Mutation p.V141A 0.14 tolerated(0.47) benign(0.002) TCGA-HU-A4GT-01 8 144662696 144662696 T C EEF1D Missense_Mutation p.I564V 0.14 deleterious(0) possibly_damaging(0.759) TCGA-HU-A4GT-01 8 144698770 144698770 C T TSTA3 Nonsense_Mutation p.W38* 0.19 TCGA-HU-A4GT-01 8 144941378 144941378 C - EPPK1 Frame_Shift_Del p.G2015Vfs*36 0.20 TCGA-HU-A4GT-01 8 144993691 144993691 A G PLEC Missense_Mutation p.V3570A 0.21 probably_damaging(0.989) TCGA-HU-A4GT-01 8 145153893 145153893 C T SHARPIN Missense_Mutation p.S351N 0.11 tolerated(0.05) benign(0.245) TCGA-HU-A4GT-01 8 145542543 145542543 A T DGAT1 Missense_Mutation p.F124I 0.12 deleterious(0.03) benign(0.298) TCGA-HU-A4GT-01 8 145579803 145579803 A G FBXL6 Missense_Mutation p.F433L 0.05 tolerated(1) benign(0) TCGA-HU-A4GT-01 8 145616151 145616151 G A ADCK5 Silent p.V146V 0.19 TCGA-HU-A4GT-01 8 145616391 145616391 T - ADCK5 Frame_Shift_Del p.F201Lfs*27 0.09 TCGA-HU-A4GT-01 8 145619255 145619255 T C CPSF1 Splice_Site p.X1287_splice 0.08 TCGA-HU-A4GT-01 8 145698024 145698024 G A KIFC2 Missense_Mutation p.R599H 0.17 deleterious(0.01) probably_damaging(1) TCGA-HU-A4GT-01 8 145773476 145773476 C - ARHGAP39 Frame_Shift_Del p.V332Cfs*52 0.18 TCGA-HU-A4GT-01 8 146029087 146029087 C - ZNF517 Frame_Shift_Del p.D34Tfs*9 0.12 TCGA-HU-A4GT-01 8 15605939 15605939 A G TUSC3 Silent p.S331S 0.42 TCGA-HU-A4GT-01 8 1905280 1905280 C T ARHGEF10 Missense_Mutation p.R1296C 0.33 deleterious(0.03) probably_damaging(0.924) TCGA-HU-A4GT-01 8 19363162 19363163 - A CSGALNACT1 Frame_Shift_Ins p.Q62Sfs*30 0.30 TCGA-HU-A4GT-01 8 21550684 21550684 T - GFRA2 3'UTR 0.71 TCGA-HU-A4GT-01 8 21938932 21938932 G A DMTN Silent p.L392L 0.43 TCGA-HU-A4GT-01 8 22210607 22210607 A G PIWIL2 Missense_Mutation p.M847V 0.22 tolerated(0.1) benign(0.18) TCGA-HU-A4GT-01 8 22472975 22472975 C - CCAR2 Frame_Shift_Del p.R417Gfs*89 0.26 TCGA-HU-A4GT-01 8 22863501 22863501 A G RHOBTB2 Missense_Mutation p.I131V 0.35 tolerated(0.18) possibly_damaging(0.756) TCGA-HU-A4GT-01 8 27101286 27101286 G T STMN4 5'UTR 0.27 TCGA-HU-A4GT-01 8 27764668 27764668 T C SCARA5 Missense_Mutation p.K365E 0.24 tolerated(0.07) probably_damaging(0.944) TCGA-HU-A4GT-01 8 28360587 28360587 T C FZD3 Silent p.H19H 0.24 TCGA-HU-A4GT-01 8 2857534 2857534 C T CSMD1 Missense_Mutation p.V2717M 0.38 probably_damaging(1) TCGA-HU-A4GT-01 8 30210244 30210244 C T TUBBP1 RNA 0.36 TCGA-HU-A4GT-01 8 3046507 3046507 G A CSMD1 Nonsense_Mutation p.R1809* 0.12 TCGA-HU-A4GT-01 8 38034486 38034486 T G BAG4 Silent p.P33P 0.73 TCGA-HU-A4GT-01 8 41551573 41551573 C A ANK1 Missense_Mutation p.Q1166H 0.20 deleterious(0) possibly_damaging(0.819) TCGA-HU-A4GT-01 8 41554007 41554007 G A ANK1 Missense_Mutation p.A986V 0.45 deleterious(0) possibly_damaging(0.702) TCGA-HU-A4GT-01 8 41563684 41563684 C T ANK1 Missense_Mutation p.V725I 0.46 deleterious(0) benign(0.291) TCGA-HU-A4GT-01 8 41753956 41753956 C T ANK1 Missense_Mutation p.E15K 0.23 deleterious_low_confidence(0) benign(0.439) TCGA-HU-A4GT-01 8 42019916 42019916 A G AP3M2 Missense_Mutation p.D188G 0.43 deleterious(0) probably_damaging(0.992) TCGA-HU-A4GT-01 8 43016647 43016647 T C HGSNAT Missense_Mutation p.L187S 0.23 deleterious(0.05) benign(0.028) TCGA-HU-A4GT-01 8 48511574 48511574 C T SPIDR Missense_Mutation p.R454C 0.41 tolerated(0.22) benign(0.01) TCGA-HU-A4GT-01 8 48887520 48887520 C T MCM4 Missense_Mutation p.T788M 0.43 deleterious(0.01) probably_damaging(0.994) TCGA-HU-A4GT-01 8 49833799 49833799 T C SNAI2 Missense_Mutation p.K9R 0.15 tolerated(0.09) possibly_damaging(0.908) TCGA-HU-A4GT-01 8 52384842 52384842 C T PXDNL Silent p.E239E 0.09 TCGA-HU-A4GT-01 8 54163341 54163341 C T OPRK1 Missense_Mutation p.R86Q 0.42 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GT-01 8 55533545 55533545 A C RP1 Missense_Mutation p.T7P 0.28 deleterious(0.03) possibly_damaging(0.878) TCGA-HU-A4GT-01 8 57026165 57026165 C T MOS Missense_Mutation p.R126H 0.42 tolerated(0.58) benign(0.036) TCGA-HU-A4GT-01 8 66989015 66989015 C T DNAJC5B Silent p.Y80Y 0.25 TCGA-HU-A4GT-01 8 67039509 67039509 C T TRIM55 Silent p.S2S 0.18 TCGA-HU-A4GT-01 8 67405903 67405903 G T C8orf46 Missense_Mutation p.S7I 0.21 deleterious(0) probably_damaging(0.991) TCGA-HU-A4GT-01 8 68930131 68930131 T C PREX2 Silent p.N64N 0.12 TCGA-HU-A4GT-01 8 72229819 72229819 G T EYA1 Missense_Mutation p.P175H 0.42 deleterious(0) possibly_damaging(0.878) TCGA-HU-A4GT-01 8 72756328 72756328 G A MSC Missense_Mutation p.P29L 0.26 tolerated_low_confidence(0.21) benign(0.023) TCGA-HU-A4GT-01 8 72951992 72951992 G T TRPA1 Missense_Mutation p.P701H 0.29 deleterious(0) probably_damaging(0.956) TCGA-HU-A4GT-01 8 74601001 74601001 T C STAU2 Silent p.E54E 0.09 TCGA-HU-A4GT-01 8 75898418 75898418 T A CRISPLD1 Missense_Mutation p.L66M 0.14 deleterious(0) probably_damaging(0.993) TCGA-HU-A4GT-01 8 76471265 76471265 A G HNF4G Silent p.L362L 0.27 TCGA-HU-A4GT-01 8 77763747 77763747 G A ZFHX4 Silent p.T1530T 0.08 TCGA-HU-A4GT-01 8 77767554 77767554 T - ZFHX4 Frame_Shift_Del p.F2800Lfs*34 0.13 TCGA-HU-A4GT-01 8 81892718 81892718 T C PAG1 Silent p.S296S 0.09 TCGA-HU-A4GT-01 8 85774620 85774620 G - RALYL Frame_Shift_Del p.G184Efs*5 0.11 TCGA-HU-A4GT-01 8 87679290 87679290 G A CNGB3 Missense_Mutation p.R239C 0.15 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GT-01 8 89128810 89128810 C T MMP16 Missense_Mutation p.G337R 0.21 tolerated(0.08) possibly_damaging(0.803) TCGA-HU-A4GT-01 8 90983458 90983458 C T NBN Silent p.R215R 0.15 TCGA-HU-A4GT-01 8 91081413 91081413 T C CALB1 Missense_Mutation p.Q95R 0.14 tolerated(0.09) probably_damaging(1) TCGA-HU-A4GT-01 8 91929826 91929826 A G NECAB1 Missense_Mutation p.E155G 0.09 deleterious(0) possibly_damaging(0.82) TCGA-HU-A4GT-01 8 95523658 95523658 G - KIAA1429 Frame_Shift_Del p.L1049Sfs*21 0.14 TCGA-HU-A4GT-01 9 100070292 100070292 G A CCDC180 Missense_Mutation p.D27N 0.18 tolerated_low_confidence(0.13) possibly_damaging(0.54) TCGA-HU-A4GT-01 9 100328170 100328170 T C TMOD1 Missense_Mutation p.L220P 0.18 deleterious(0) probably_damaging(0.947) TCGA-HU-A4GT-01 9 104171448 104171448 T C ZNF189 Silent p.S466S 0.09 TCGA-HU-A4GT-01 9 111625023 111625023 G A ACTL7A Missense_Mutation p.V141M 0.31 deleterious(0) possibly_damaging(0.496) TCGA-HU-A4GT-01 9 113192681 113192681 T C SVEP1 Silent p.S1801S 0.36 TCGA-HU-A4GT-01 9 113562722 113562722 G T MUSK Missense_Mutation p.Q688H 0.07 tolerated(0.15) benign(0.002) TCGA-HU-A4GT-01 9 114484808 114484808 T - C9orf84 Frame_Shift_Del p.N607Tfs*27 0.28 TCGA-HU-A4GT-01 9 114695180 114695180 T - UGCG Frame_Shift_Del p.L365Cfs*9 0.15 TCGA-HU-A4GT-01 9 116840388 116840388 G A AMBP Silent p.N34N 0.40 TCGA-HU-A4GT-01 9 119625888 119625888 G A ASTN2 Missense_Mutation p.R621W 0.37 deleterious(0) unknown(0) TCGA-HU-A4GT-01 9 124535672 124535672 G A DAB2IP Silent p.S927S 0.61 TCGA-HU-A4GT-01 9 125288841 125288841 G A OR1N1 Silent p.C244C 0.33 TCGA-HU-A4GT-01 9 125627905 125627905 T C RC3H2 Missense_Mutation p.T453A 0.09 tolerated(0.84) probably_damaging(0.931) TCGA-HU-A4GT-01 9 125782719 125782719 A G RABGAP1 Missense_Mutation p.Y592C 0.16 deleterious(0) probably_damaging(1) TCGA-HU-A4GT-01 9 127617935 127617935 C A WDR38 Missense_Mutation p.F71L 0.19 tolerated(0.06) benign(0.246) TCGA-HU-A4GT-01 9 127620344 127620344 G A RPL35 Silent p.G75G 0.43 TCGA-HU-A4GT-01 9 129642108 129642108 G A ZBTB34 Missense_Mutation p.G140S 0.28 tolerated(0.84) benign(0.222) TCGA-HU-A4GT-01 9 130152962 130152962 A C GARNL3 Missense_Mutation p.K929T 0.25 deleterious_low_confidence(0.01) benign(0.151) TCGA-HU-A4GT-01 9 130197367 130197367 A G ZNF79 Splice_Site p.X36_splice 0.32 TCGA-HU-A4GT-01 9 130941408 130941408 G A CIZ1 Nonsense_Mutation p.Q360* 0.37 TCGA-HU-A4GT-01 9 131223325 131223325 G T ODF2 Silent p.R76R 0.30 TCGA-HU-A4GT-01 9 13136156 13136156 C T MPDZ Missense_Mutation p.A1440T 0.13 deleterious(0.03) probably_damaging(0.997) TCGA-HU-A4GT-01 9 131565555 131565555 G A TBC1D13 Silent p.V190V 0.29 TCGA-HU-A4GT-01 9 132400101 132400101 C T ASB6 Missense_Mutation p.E412K 0.31 deleterious_low_confidence(0.01) benign(0.342) TCGA-HU-A4GT-01 9 13247747 13247747 G A MPDZ Missense_Mutation p.R24C 0.36 deleterious(0.03) probably_damaging(1) TCGA-HU-A4GT-01 9 133748246 133748246 G - ABL1 Splice_Site p.X323_splice 0.22 TCGA-HU-A4GT-01 9 134151346 134151347 - G FAM78A Frame_Shift_Ins p.Q74Pfs*87 0.28 TCGA-HU-A4GT-01 9 134497351 134497351 C T RAPGEF1 Silent p.S580S 0.19 TCGA-HU-A4GT-01 9 135947128 135947128 A G CEL Missense_Mutation p.M750V 0.41 tolerated_low_confidence(0.08) possibly_damaging(0.557) TCGA-HU-A4GT-01 9 135984104 135984106 AGG - RALGDS In_Frame_Del p.L245del 0.11 TCGA-HU-A4GT-01 9 136271954 136271954 G A REXO4 3'UTR 0.23 TCGA-HU-A4GT-01 9 136321249 136321249 G A ADAMTS13 Silent p.G1209G 0.12 TCGA-HU-A4GT-01 9 137300061 137300061 G A RXRA Missense_Mutation p.V116I 0.26 tolerated(0.3) benign(0.01) TCGA-HU-A4GT-01 9 137982144 137982144 G A OLFM1 Missense_Mutation p.C67Y 0.33 deleterious(0) possibly_damaging(0.712) TCGA-HU-A4GT-01 9 138387195 138387195 C T C9orf116 3'UTR 0.41 TCGA-HU-A4GT-01 9 138677161 138677161 C T KCNT1 Silent p.H1054H 0.16 TCGA-HU-A4GT-01 9 139008452 139008452 G T C9orf69 Missense_Mutation p.L99M 0.08 tolerated(0.07) probably_damaging(0.996) TCGA-HU-A4GT-01 9 139265834 139265834 C T CARD9 Silent p.P88P 0.29 TCGA-HU-A4GT-01 9 139405214 139405214 C T NOTCH1 Silent p.P877P 0.53 TCGA-HU-A4GT-01 9 139731890 139731890 T C RABL6 Missense_Mutation p.V302A 0.20 tolerated(0.09) benign(0.294) TCGA-HU-A4GT-01 9 139815649 139815649 C T TRAF2 Missense_Mutation p.P374S 0.08 tolerated(0.06) benign(0.414) TCGA-HU-A4GT-01 9 139972802 139972802 C T UAP1L1 Intron 0.16 TCGA-HU-A4GT-01 9 140055596 140055596 A G GRIN1 Missense_Mutation p.D450G 0.15 tolerated(0.37) benign(0.001) TCGA-HU-A4GT-01 9 140672443 140672443 G A EHMT1 Missense_Mutation p.G710S 0.21 tolerated(0.26) benign(0.105) TCGA-HU-A4GT-01 9 140773593 140773593 G A CACNA1B Silent p.T124T 0.12 TCGA-HU-A4GT-01 9 140946568 140946568 T C CACNA1B Silent p.N1245N 0.09 TCGA-HU-A4GT-01 9 140948361 140948361 C A CACNA1B Missense_Mutation p.L1291I 0.07 deleterious(0) probably_damaging(0.944) TCGA-HU-A4GT-01 9 14737553 14737553 G A FREM1 Silent p.I2127I 0.50 TCGA-HU-A4GT-01 9 17795786 17795786 C T SH3GL2 3'UTR 0.31 TCGA-HU-A4GT-01 9 19063681 19063681 C T HAUS6 Intron 0.36 TCGA-HU-A4GT-01 9 20413989 20413989 C T MLLT3 Silent p.P285P 0.21 TCGA-HU-A4GT-01 9 21029383 21029383 G A PTPLAD2 Missense_Mutation p.A18V 0.39 tolerated(0.38) benign(0) TCGA-HU-A4GT-01 9 21141445 21141445 T C IFNW1 Missense_Mutation p.H42R 0.39 tolerated(0.35) benign(0.014) TCGA-HU-A4GT-01 9 21333640 21333640 G A KLHL9 Missense_Mutation p.R407C 0.41 deleterious(0) probably_damaging(0.994) TCGA-HU-A4GT-01 9 33464082 33464082 G - NOL6 Frame_Shift_Del p.Q953Kfs*32 0.28 TCGA-HU-A4GT-01 9 34125105 34125106 CT - DCAF12 Frame_Shift_Del p.E83Vfs*7 0.39 TCGA-HU-A4GT-01 9 34996747 34996747 G A DNAJB5 Missense_Mutation p.A347T 0.18 tolerated(0.07) possibly_damaging(0.616) TCGA-HU-A4GT-01 9 35062112 35062112 G A VCP Silent p.R323R 0.46 TCGA-HU-A4GT-01 9 35091693 35091693 G - PIGO Frame_Shift_Del p.R731Vfs*17 0.23 TCGA-HU-A4GT-01 9 35706862 35706862 G A TLN1 Missense_Mutation p.A1664V 0.28 tolerated(0.18) probably_damaging(0.97) TCGA-HU-A4GT-01 9 35869823 35869823 C T OR13J1 Silent p.T192T 0.35 TCGA-HU-A4GT-01 9 405015 405015 T - DOCK8 Frame_Shift_Del p.F1113Lfs*2 0.42 TCGA-HU-A4GT-01 9 40705863 40705864 - T SPATA31A3 Frame_Shift_Ins p.S1176Ffs*13 0.19 TCGA-HU-A4GT-01 9 420992 420992 A C DOCK8 Missense_Mutation p.K1356T 0.41 deleterious(0.04) possibly_damaging(0.864) TCGA-HU-A4GT-01 9 5908716 5908716 C T MLANA 3'UTR 0.23 TCGA-HU-A4GT-01 9 70993145 70993145 A G PGM5 Missense_Mutation p.I98V 0.10 deleterious(0.01) possibly_damaging(0.573) TCGA-HU-A4GT-01 9 7103815 7103815 A G KDM4C Missense_Mutation p.D852G 0.08 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GT-01 9 71628079 71628081 CTT - PRKACG In_Frame_Del p.K310del 0.44 TCGA-HU-A4GT-01 9 72962552 72962554 AGA - SMC5 In_Frame_Del p.E899del 0.32 TCGA-HU-A4GT-01 9 87342632 87342632 C T NTRK2 Missense_Mutation p.T306I 0.31 deleterious(0) possibly_damaging(0.907) TCGA-HU-A4GT-01 9 91616825 91616825 G A S1PR3 Missense_Mutation p.R237Q 0.21 tolerated(0.49) probably_damaging(0.948) TCGA-HU-A4GT-01 9 93376078 93376078 G A DIRAS2 Missense_Mutation p.A11V 0.34 tolerated(1) benign(0.009) TCGA-HU-A4GT-01 9 95152157 95152157 T C OGN Silent p.G203G 0.35 TCGA-HU-A4GT-01 9 95267870 95267870 C T ECM2 Missense_Mutation p.R470H 0.44 deleterious(0.02) possibly_damaging(0.65) TCGA-HU-A4GT-01 9 97216241 97216241 C T HIATL1 Missense_Mutation p.T306M 0.36 deleterious(0) probably_damaging(0.973) TCGA-HU-A4GT-01 9 99084346 99084346 T C SLC35D2 Missense_Mutation p.Y283C 0.10 deleterious(0) probably_damaging(0.997) TCGA-HU-A4GT-01 X 10107541 10107541 G T WWC3 Missense_Mutation p.G1058V 0.39 deleterious(0) possibly_damaging(0.71) TCGA-HU-A4GT-01 X 101409129 101409129 C T BEX5 Missense_Mutation p.G37R 0.38 tolerated(0.81) benign(0.027) TCGA-HU-A4GT-01 X 105011682 105011682 T A IL1RAPL2 3'UTR 0.29 TCGA-HU-A4GT-01 X 105277461 105277461 C T SERPINA7 3'UTR 0.39 TCGA-HU-A4GT-01 X 107977919 107977919 G A IRS4 Silent p.T552T 0.33 TCGA-HU-A4GT-01 X 108926679 108926679 G A ACSL4 Silent p.L13L 0.35 TCGA-HU-A4GT-01 X 11133048 11133048 A C HCCS Missense_Mutation p.E65A 0.14 tolerated(0.08) benign(0.05) TCGA-HU-A4GT-01 X 115304470 115304470 G A AGTR2 Missense_Mutation p.V313I 0.34 tolerated(1) benign(0.001) TCGA-HU-A4GT-01 X 118587011 118587011 A - SLC25A43 Frame_Shift_Del p.K338Nfs*10 0.30 TCGA-HU-A4GT-01 X 119760807 119760807 A G C1GALT1C1 Missense_Mutation p.I72T 0.57 deleterious(0.02) possibly_damaging(0.76) TCGA-HU-A4GT-01 X 122767863 122767863 C G THOC2 Missense_Mutation p.E693Q 0.33 deleterious(0) benign(0.146) TCGA-HU-A4GT-01 X 125299809 125299809 T G DCAF12L2 Silent p.G33G 0.38 TCGA-HU-A4GT-01 X 12736157 12736157 G A FRMPD4 Missense_Mutation p.R1071Q 0.21 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-HU-A4GT-01 X 12840909 12840909 G A PRPS2 Silent p.P320P 0.09 TCGA-HU-A4GT-01 X 128621084 128621084 T - SMARCA1 Frame_Shift_Del p.M710Wfs*6 0.25 TCGA-HU-A4GT-01 X 128873125 128873125 G A XPNPEP2 5'UTR 0.30 TCGA-HU-A4GT-01 X 129629871 129629871 G T RP1-274L7.1 Intron 0.21 TCGA-HU-A4GT-01 X 134989589 134989589 C T SAGE1 Missense_Mutation p.P332L 0.14 tolerated(0.16) benign(0.01) TCGA-HU-A4GT-01 X 135494468 135494468 C T GPR112 Missense_Mutation p.R2994W 0.12 deleterious(0.01) probably_damaging(0.991) TCGA-HU-A4GT-01 X 139586054 139586054 C T SOX3 Missense_Mutation p.R391H 0.58 deleterious(0.05) benign(0.232) TCGA-HU-A4GT-01 X 140785702 140785702 C T SPANXD Missense_Mutation p.A72T 0.32 deleterious(0.01) benign(0.311) TCGA-HU-A4GT-01 X 148048440 148048440 G A AFF2 Missense_Mutation p.A1012T 0.40 tolerated(0.52) probably_damaging(0.997) TCGA-HU-A4GT-01 X 148564565 148564565 A G IDS Silent p.G244G 0.24 TCGA-HU-A4GT-01 X 149818248 149818248 A G MTM1 Silent p.L309L 0.38 TCGA-HU-A4GT-01 X 150841026 150841027 - T PASD1 Frame_Shift_Ins p.L605Ffs*14 0.10 TCGA-HU-A4GT-01 X 151366135 151366135 T A GABRA3 Nonsense_Mutation p.R301* 0.11 TCGA-HU-A4GT-01 X 152612854 152612854 C T ZNF275 Silent p.F237F 0.40 TCGA-HU-A4GT-01 X 152994806 152994806 C T ABCD1 Silent p.S340S 0.33 TCGA-HU-A4GT-01 X 153040502 153040502 C T PLXNB3 Missense_Mutation p.R1390C 0.12 tolerated(0.06) benign(0.003) TCGA-HU-A4GT-01 X 153631131 153631131 G A DNASE1L1 Nonsense_Mutation p.Q276* 0.33 TCGA-HU-A4GT-01 X 153691740 153691740 G A PLXNA3 Missense_Mutation p.V442I 0.06 tolerated(0.15) benign(0.078) TCGA-HU-A4GT-01 X 153761218 153761218 G A G6PD Silent p.R360R 0.42 TCGA-HU-A4GT-01 X 154003362 154003362 G A DKC1 Intron 0.43 TCGA-HU-A4GT-01 X 1551188 1551188 C A ASMTL Missense_Mutation p.W161C 0.17 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GT-01 X 16836951 16836951 T C TXLNG Silent p.P119P 0.30 TCGA-HU-A4GT-01 X 18622406 18622406 A G CDKL5 Silent p.K454K 0.08 TCGA-HU-A4GT-01 X 18845641 18845641 A C PPEF1 3'UTR 0.27 TCGA-HU-A4GT-01 X 2408419 2408419 G A ZBED1 Silent p.A114A 0.29 TCGA-HU-A4GT-01 X 25033714 25033714 C T ARX Silent p.A47A 0.21 TCGA-HU-A4GT-01 X 301654 301654 G A PPP2R3B Silent p.C399C 0.33 TCGA-HU-A4GT-01 X 30260375 30260375 T A MAGEB4 Silent p.S41S 0.18 TCGA-HU-A4GT-01 X 30327190 30327190 G T NR0B1 Silent p.P97P 0.34 TCGA-HU-A4GT-01 X 30671584 30671584 T G GK 5'UTR 0.37 TCGA-HU-A4GT-01 X 32867885 32867885 C T DMD Missense_Mutation p.R49H 0.38 probably_damaging(0.983) TCGA-HU-A4GT-01 X 34150246 34150246 A - FAM47A Frame_Shift_Del p.F50Lfs*2 0.18 TCGA-HU-A4GT-01 X 35993834 35993834 A C CXorf22 Silent p.L839L 0.28 TCGA-HU-A4GT-01 X 37301084 37301084 C T PRRG1 Intron 0.19 TCGA-HU-A4GT-01 X 39933400 39933400 C - BCOR Frame_Shift_Del p.G400Afs*42 0.20 TCGA-HU-A4GT-01 X 39933920 39933920 A G BCOR Missense_Mutation p.Y227H 0.37 tolerated(0.18) probably_damaging(0.998) TCGA-HU-A4GT-01 X 41390261 41390261 T C CASK Missense_Mutation p.Q835R 0.41 deleterious(0) possibly_damaging(0.636) TCGA-HU-A4GT-01 X 47003964 47003964 C T NDUFB11 Missense_Mutation p.A39T 0.29 tolerated(0.31) benign(0.079) TCGA-HU-A4GT-01 X 47030579 47030579 G T RBM10 Missense_Mutation p.E118D 0.34 tolerated_low_confidence(0.41) benign(0.005) TCGA-HU-A4GT-01 X 47307846 47307846 G A ZNF41 Silent p.C441C 0.46 TCGA-HU-A4GT-01 X 47434574 47434574 G A SYN1 Missense_Mutation p.R420W 0.24 deleterious(0) possibly_damaging(0.897) TCGA-HU-A4GT-01 X 48434786 48434786 C T RBM3 Missense_Mutation p.R99C 0.23 tolerated(0.14) benign(0) TCGA-HU-A4GT-01 X 50111965 50111965 G T DGKK RNA 0.40 TCGA-HU-A4GT-01 X 53576030 53576031 - C HUWE1 Frame_Shift_Ins p.R3309Afs*2 0.19 TCGA-HU-A4GT-01 X 54780118 54780118 C A ITIH6 Silent p.G1106G 0.34 TCGA-HU-A4GT-01 X 54949009 54949009 A G TRO Splice_Site p.X16_splice 0.29 TCGA-HU-A4GT-01 X 55035639 55035639 G A ALAS2 Missense_Mutation p.P580S 0.38 deleterious_low_confidence(0.01) probably_damaging(0.96) TCGA-HU-A4GT-01 X 55650415 55650415 G T FOXR2 Missense_Mutation p.G91C 0.10 deleterious(0) probably_damaging(0.928) TCGA-HU-A4GT-01 X 56292162 56292162 A - KLF8 Frame_Shift_Del p.N212Mfs*5 0.21 TCGA-HU-A4GT-01 X 69669273 69669273 C A DLG3 Missense_Mutation p.P158H 0.38 deleterious(0) possibly_damaging(0.834) TCGA-HU-A4GT-01 X 70386936 70386936 A G NLGN3 Missense_Mutation p.Y330C 0.30 tolerated(0.07) probably_damaging(1) TCGA-HU-A4GT-01 X 71349748 71349748 G - RGAG4 Frame_Shift_Del p.P548Lfs*52 0.27 TCGA-HU-A4GT-01 X 71495454 71495454 G A RPS4X Missense_Mutation p.R68W 0.36 tolerated(0.09) benign(0.009) TCGA-HU-A4GT-01 X 73050907 73050907 G A XIST RNA 0.45 TCGA-HU-A4GT-01 X 73963421 73963421 T C KIAA2022 Missense_Mutation p.K324R 0.35 tolerated(0.11) probably_damaging(0.991) TCGA-HU-A4GT-01 X 74513339 74513339 C T UPRT Missense_Mutation p.A140V 0.33 deleterious(0.01) probably_damaging(0.978) TCGA-HU-A4GT-01 X 76763847 76763847 G A ATRX Silent p.S2487S 0.10 TCGA-HU-A4GT-01 X 76829815 76829816 - C ATRX Frame_Shift_Ins p.K2076Efs*7 0.16 TCGA-HU-A4GT-01 X 77258620 77258620 T C ATP7A Missense_Mutation p.Y532H 0.09 deleterious(0) probably_damaging(1) TCGA-HU-A4GT-01 X 77912480 77912480 G - ZCCHC5 3'UTR 0.36 TCGA-HU-A4GT-01 X 78010354 78010355 - A LPAR4 5'UTR 0.32 TCGA-HU-A4GT-01 X 82763572 82763572 C T POU3F4 Silent p.D80D 0.42 TCGA-HU-A4GT-01 X 82764266 82764266 G A POU3F4 Missense_Mutation p.A312T 0.46 deleterious(0) probably_damaging(0.995) TCGA-HU-A4GT-01 X 92928199 92928199 G A NAP1L3 Silent p.S35S 0.46 TCGA-HU-A4GT-01 X 95993621 95993621 A - DIAPH2 Frame_Shift_Del p.E70Kfs*15 0.33 TCGA-HU-A4GT-01 X 96354737 96354737 A G DIAPH2 Silent p.L764L 0.38 TCGA-HU-A4GT-01 X 99920365 99920365 A C SRPX2 Silent p.R220R 0.33 TCGA-HU-A4GU-01 10 101489441 101489441 A G COX15 Silent p.S47S 0.15 TCGA-HU-A4GU-01 10 102107859 102107859 G A SCD Silent p.A22A 0.34 TCGA-HU-A4GU-01 10 102255279 102255279 G A SEC31B Missense_Mutation p.R779W 0.40 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GU-01 10 102893954 102893954 G A TLX1 Silent p.T197T 0.47 TCGA-HU-A4GU-01 10 103607151 103607151 C T C10orf76 3'UTR 0.35 TCGA-HU-A4GU-01 10 104174959 104174959 G - PSD Frame_Shift_Del p.P262Hfs*32 0.33 TCGA-HU-A4GU-01 10 104415048 104415048 C T TRIM8 Missense_Mutation p.T293M 0.53 deleterious(0.01) possibly_damaging(0.738) TCGA-HU-A4GU-01 10 111967674 111967674 G A MXI1 Silent p.P36P 0.31 TCGA-HU-A4GU-01 10 114136194 114136195 - C ACSL5 Frame_Shift_Ins p.S45Lfs*18 0.19 TCGA-HU-A4GU-01 10 116444084 116444084 A C ABLIM1 Missense_Mutation p.L10R 0.40 tolerated_low_confidence(0.15) benign(0) TCGA-HU-A4GU-01 10 118385521 118385521 G A PNLIPRP2 Missense_Mutation p.R90H 0.47 tolerated(0.1) possibly_damaging(0.499) TCGA-HU-A4GU-01 10 118396399 118396400 AC - PNLIPRP2 Frame_Shift_Del p.T348Rfs*5 0.20 TCGA-HU-A4GU-01 10 118434729 118434729 G A HSPA12A Missense_Mutation p.R531C 0.26 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GU-01 10 119042898 119042898 T - PDZD8 Frame_Shift_Del p.I1116* 0.29 TCGA-HU-A4GU-01 10 121436821 121436821 G A BAG3 3'UTR 0.27 TCGA-HU-A4GU-01 10 124457714 124457714 C A C10orf120 Missense_Mutation p.Q181H 0.38 tolerated(0.17) benign(0.091) TCGA-HU-A4GU-01 10 124754218 124754218 T C IKZF5 Missense_Mutation p.H113R 0.07 tolerated(0.13) benign(0.063) TCGA-HU-A4GU-01 10 124800748 124800748 G T ACADSB Missense_Mutation p.E178D 0.27 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GU-01 10 126671767 126671767 G A ZRANB1 Silent p.T524T 0.34 TCGA-HU-A4GU-01 10 13168010 13168010 A - OPTN Frame_Shift_Del p.T406Qfs*5 0.16 TCGA-HU-A4GU-01 10 13178765 13178765 C T OPTN Missense_Mutation p.R545W 0.12 deleterious(0.02) possibly_damaging(0.582) TCGA-HU-A4GU-01 10 134010562 134010562 C T DPYSL4 Missense_Mutation p.A193V 0.44 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GU-01 10 134622003 134622003 G A TTC40 Silent p.G2690G 0.28 TCGA-HU-A4GU-01 10 135024207 135024207 G A KNDC1 Missense_Mutation p.R1296H 0.33 deleterious(0) probably_damaging(0.938) TCGA-HU-A4GU-01 10 135032588 135032588 C T KNDC1 Silent p.A1618A 0.19 TCGA-HU-A4GU-01 10 15145415 15145415 C T RPP38 Silent p.S34S 0.10 TCGA-HU-A4GU-01 10 15254921 15254921 A T FAM171A1 Missense_Mutation p.I889N 0.08 deleterious(0) benign(0.265) TCGA-HU-A4GU-01 10 15290770 15290770 C T FAM171A1 Missense_Mutation p.V208I 0.06 tolerated(0.17) benign(0.009) TCGA-HU-A4GU-01 10 16526567 16526567 A - PTER Frame_Shift_Del p.N63Tfs*11 0.19 TCGA-HU-A4GU-01 10 16941150 16941150 T C CUBN Missense_Mutation p.T2815A 0.13 tolerated(0.08) benign(0.189) TCGA-HU-A4GU-01 10 17277192 17277192 C T VIM Missense_Mutation p.R345C 0.20 deleterious(0) probably_damaging(0.984) TCGA-HU-A4GU-01 10 18276520 18276520 G A SLC39A12 Silent p.L403L 0.15 TCGA-HU-A4GU-01 10 24508692 24508692 G - KIAA1217 Frame_Shift_Del p.R73Efs*22 0.15 TCGA-HU-A4GU-01 10 25160939 25160939 C T PRTFDC1 Silent p.T131T 0.05 TCGA-HU-A4GU-01 10 25279400 25279400 C T ENKUR Missense_Mutation p.V196I 0.12 tolerated(0.77) benign(0.003) TCGA-HU-A4GU-01 10 25887786 25887786 A C GPR158 Missense_Mutation p.Q1077H 0.18 deleterious(0.05) benign(0.021) TCGA-HU-A4GU-01 10 26443677 26443677 C T MYO3A Silent p.G906G 0.21 TCGA-HU-A4GU-01 10 26505753 26505753 C T GAD2 Silent p.G5G 0.26 TCGA-HU-A4GU-01 10 26506836 26506836 G A GAD2 Missense_Mutation p.A68T 0.12 tolerated_low_confidence(0.55) benign(0) TCGA-HU-A4GU-01 10 26513580 26513580 G A GAD2 Missense_Mutation p.G242S 0.21 deleterious(0) probably_damaging(1) TCGA-HU-A4GU-01 10 27012843 27012843 C T PDSS1 Missense_Mutation p.R240C 0.15 deleterious(0.05) benign(0.168) TCGA-HU-A4GU-01 10 27702478 27702478 G A PTCHD3 Silent p.G234G 0.25 TCGA-HU-A4GU-01 10 31133912 31133912 A T ZNF438 Missense_Mutation p.L822H 0.42 deleterious(0) possibly_damaging(0.906) TCGA-HU-A4GU-01 10 31134326 31134326 G A ZNF438 Missense_Mutation p.P684L 0.21 deleterious(0.01) probably_damaging(1) TCGA-HU-A4GU-01 10 3124609 3124609 C T PFKP Missense_Mutation p.R48C 0.15 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GU-01 10 31815877 31815877 C T ZEB1 Silent p.G1021G 0.22 TCGA-HU-A4GU-01 10 33502476 33502476 C T NRP1 Nonsense_Mutation p.W484* 0.14 TCGA-HU-A4GU-01 10 38343438 38343438 A G ZNF33A Missense_Mutation p.D129G 0.17 tolerated(0.63) benign(0.013) TCGA-HU-A4GU-01 10 43315753 43315753 A G BMS1 Missense_Mutation p.M884V 0.24 deleterious(0.01) possibly_damaging(0.595) TCGA-HU-A4GU-01 10 43613913 43613913 G A RET Missense_Mutation p.A793T 0.19 deleterious(0) probably_damaging(0.922) TCGA-HU-A4GU-01 10 43869090 43869090 C A FXYD4 5'UTR 0.17 TCGA-HU-A4GU-01 10 45430553 45430553 T C TMEM72 Missense_Mutation p.S267P 0.13 tolerated(0.1) benign(0.014) TCGA-HU-A4GU-01 10 46961894 46961894 C T SYT15 3'Flank 0.11 TCGA-HU-A4GU-01 10 49457097 49457097 T C FRMPD2 Silent p.G92G 0.11 TCGA-HU-A4GU-01 10 50680490 50680490 G A ERCC6 Silent p.G952G 0.18 TCGA-HU-A4GU-01 10 50820429 50820429 G - SLC18A3 3'UTR 0.17 TCGA-HU-A4GU-01 10 50902044 50902044 T G C10orf53 Intron 0.26 TCGA-HU-A4GU-01 10 50959951 50959951 T C OGDHL Missense_Mutation p.K224R 0.24 tolerated(1) benign(0.003) TCGA-HU-A4GU-01 10 51585083 51585083 T C NCOA4 Silent p.H410H 0.20 TCGA-HU-A4GU-01 10 5782190 5782190 C A FAM208B Missense_Mutation p.P686H 0.15 deleterious(0) probably_damaging(0.98) TCGA-HU-A4GU-01 10 5788819 5788819 G A FAM208B Silent p.T1145T 0.15 TCGA-HU-A4GU-01 10 5959450 5959450 C T FBXO18 Missense_Mutation p.A670V 0.10 tolerated(0.09) possibly_damaging(0.629) TCGA-HU-A4GU-01 10 6154225 6154225 G T RBM17 Missense_Mutation p.G253C 0.09 deleterious(0) probably_damaging(0.983) TCGA-HU-A4GU-01 10 61831897 61831897 T G ANK3 Silent p.S2914S 0.16 TCGA-HU-A4GU-01 10 69571347 69571347 A C DNAJC12 Missense_Mutation p.W78G 0.16 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GU-01 10 70332675 70332676 - A TET1 Frame_Shift_Ins p.R195Kfs*3 0.11 TCGA-HU-A4GU-01 10 70706518 70706518 T A DDX50 3'UTR 0.19 TCGA-HU-A4GU-01 10 71977579 71977579 C T PPA1 Missense_Mutation p.A96T 0.14 deleterious(0.02) probably_damaging(1) TCGA-HU-A4GU-01 10 72358049 72358049 C - PRF1 Frame_Shift_Del p.L478* 0.17 TCGA-HU-A4GU-01 10 73047482 73047482 C T UNC5B Silent p.G287G 0.21 TCGA-HU-A4GU-01 10 73464675 73464675 C T CDH23 Missense_Mutation p.A506V 0.11 tolerated(0.17) benign(0.175) TCGA-HU-A4GU-01 10 73491898 73491898 G A CDH23 Silent p.P1295P 0.12 TCGA-HU-A4GU-01 10 73588831 73588831 G A PSAP Missense_Mutation p.R127C 0.08 deleterious(0.05) possibly_damaging(0.849) TCGA-HU-A4GU-01 10 73970504 73970504 G - ASCC1 Frame_Shift_Del p.S67Afs*9 0.17 TCGA-HU-A4GU-01 10 74695299 74695299 G A PLA2G12B 3'UTR 0.18 TCGA-HU-A4GU-01 10 74885044 74885044 C T NUDT13 Intron 0.18 TCGA-HU-A4GU-01 10 75188039 75188039 C T MSS51 Missense_Mutation p.A2T 0.16 deleterious_low_confidence(0.01) unknown(0) TCGA-HU-A4GU-01 10 75234731 75234731 T A PPP3CB Nonsense_Mutation p.R157* 0.28 TCGA-HU-A4GU-01 10 75408049 75408049 C G SYNPO2L Missense_Mutation p.G454A 0.10 tolerated(0.19) benign(0.004) TCGA-HU-A4GU-01 10 75482333 75482333 T C RP11-574K11.28 Intron 0.11 TCGA-HU-A4GU-01 10 75525936 75525936 G T SEC24C Missense_Mutation p.E525D 0.18 tolerated(0.32) benign(0.019) TCGA-HU-A4GU-01 10 76789444 76789444 C T KAT6B Missense_Mutation p.A1621V 0.14 benign(0.046) TCGA-HU-A4GU-01 10 76863773 76863773 G A DUSP13 Intron 0.21 TCGA-HU-A4GU-01 10 7866405 7866405 G A TAF3 Silent p.P97P 0.18 TCGA-HU-A4GU-01 10 78944607 78944607 A C KCNMA1 Missense_Mutation p.F224V 0.19 deleterious(0.01) benign(0.275) TCGA-HU-A4GU-01 10 79795119 79795119 G A RPS24 Missense_Mutation p.V5I 0.20 tolerated_low_confidence(0.05) benign(0.131) TCGA-HU-A4GU-01 10 81037036 81037036 C - ZMIZ1 Frame_Shift_Del p.P128Lfs*5 0.24 TCGA-HU-A4GU-01 10 81061949 81061949 C T ZMIZ1 Missense_Mutation p.A702V 0.21 probably_damaging(0.997) TCGA-HU-A4GU-01 10 84745310 84745310 G A NRG3 Silent p.A680A 0.08 TCGA-HU-A4GU-01 10 88702426 88702426 G A MMRN2 Silent p.S705S 0.27 TCGA-HU-A4GU-01 10 88769344 88769344 C A RP11-96C23.10 3'Flank 0.42 TCGA-HU-A4GU-01 10 93579297 93579297 G A TNKS2 Missense_Mutation p.A206T 0.31 deleterious(0.04) possibly_damaging(0.706) TCGA-HU-A4GU-01 10 96291116 96291116 G A TBC1D12 Missense_Mutation p.A720T 0.37 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GU-01 10 97605234 97605234 T A ENTPD1 Missense_Mutation p.S244T 0.33 deleterious(0.04) probably_damaging(0.944) TCGA-HU-A4GU-01 10 98760812 98760812 G A SLIT1 3'UTR 0.44 TCGA-HU-A4GU-01 11 100179126 100179126 A C CNTN5 Missense_Mutation p.S886R 0.18 deleterious(0) possibly_damaging(0.751) TCGA-HU-A4GU-01 11 10051398 10051398 C T SBF2 Missense_Mutation p.V143M 0.04 deleterious(0) probably_damaging(0.919) TCGA-HU-A4GU-01 11 100998925 100998925 G A PGR Missense_Mutation p.R293C 0.36 tolerated_low_confidence(0.09) benign(0.008) TCGA-HU-A4GU-01 11 101374812 101374812 C A TRPC6 Silent p.T296T 0.22 TCGA-HU-A4GU-01 11 101937275 101937275 T - C11orf70 Frame_Shift_Del p.H112Ifs*19 0.20 TCGA-HU-A4GU-01 11 10215523 10215523 C A SBF2 Missense_Mutation p.G23C 0.07 deleterious(0.03) probably_damaging(0.984) TCGA-HU-A4GU-01 11 104879548 104879548 G A CASP5 Missense_Mutation p.S69L 0.21 tolerated(0.4) benign(0.042) TCGA-HU-A4GU-01 11 10517270 10517270 C T AMPD3 Missense_Mutation p.P483S 0.23 deleterious(0) probably_damaging(1) TCGA-HU-A4GU-01 11 10546849 10546850 TT - RNF141 Frame_Shift_Del p.K108Rfs*17 0.18 TCGA-HU-A4GU-01 11 105483047 105483047 C T GRIA4 Nonsense_Mutation p.R45* 0.28 TCGA-HU-A4GU-01 11 106888515 106888515 C T GUCY1A2 Silent p.S89S 0.33 TCGA-HU-A4GU-01 11 110035459 110035459 C A ZC3H12C Missense_Mutation p.P550H 0.07 tolerated(0.5) benign(0.376) TCGA-HU-A4GU-01 11 113281392 113281392 C T DRD2 3'UTR 0.30 TCGA-HU-A4GU-01 11 1158129 1158129 C A MUC5AC Missense_Mutation p.A370D 0.33 tolerated(1) benign(0.002) TCGA-HU-A4GU-01 11 116691900 116691900 G T APOA4 Missense_Mutation p.L292M 0.63 tolerated(0.13) probably_damaging(0.911) TCGA-HU-A4GU-01 11 117403175 117403175 C T DSCAML1 Missense_Mutation p.A252T 0.21 tolerated(0.1) benign(0.41) TCGA-HU-A4GU-01 11 118047182 118047182 G T SCN2B 5'UTR 0.15 TCGA-HU-A4GU-01 11 118245827 118245827 C A UBE4A Missense_Mutation p.L452I 0.16 deleterious(0.01) probably_damaging(0.988) TCGA-HU-A4GU-01 11 118764379 118764379 G - CXCR5 Frame_Shift_Del p.L45Sfs*22 0.14 TCGA-HU-A4GU-01 11 118772051 118772051 G A BCL9L Missense_Mutation p.R801W 0.15 probably_damaging(0.998) TCGA-HU-A4GU-01 11 118773101 118773102 GG T BCL9L Frame_Shift_Del p.Q452Sfs*11 0.17 TCGA-HU-A4GU-01 11 119216564 119216564 T G MFRP Missense_Mutation p.T116P 0.17 tolerated(0.46) benign(0) TCGA-HU-A4GU-01 11 11957978 11957978 C T USP47 Silent p.G598G 0.25 TCGA-HU-A4GU-01 11 11969622 11969622 C T USP47 Silent p.S1006S 0.29 TCGA-HU-A4GU-01 11 120744855 120744855 C T GRIK4 Silent p.G329G 0.18 TCGA-HU-A4GU-01 11 120980049 120980049 G A TECTA Missense_Mutation p.E110K 0.06 tolerated(0.16) benign(0.356) TCGA-HU-A4GU-01 11 120996158 120996158 G T TECTA Missense_Mutation p.G451C 0.03 tolerated(0.09) probably_damaging(0.926) TCGA-HU-A4GU-01 11 120996203 120996203 A - TECTA Frame_Shift_Del p.N467Tfs*91 0.16 TCGA-HU-A4GU-01 11 120998952 120998954 AAG - TECTA In_Frame_Del p.K758del 0.11 TCGA-HU-A4GU-01 11 121000442 121000442 C T TECTA Silent p.G821G 0.20 TCGA-HU-A4GU-01 11 121000757 121000757 C T TECTA Silent p.C926C 0.17 TCGA-HU-A4GU-01 11 121016728 121016728 C T TECTA Silent p.G1336G 0.14 TCGA-HU-A4GU-01 11 121358756 121358756 G A SORL1 Missense_Mutation p.A182T 0.21 tolerated(0.47) benign(0.028) TCGA-HU-A4GU-01 11 121421293 121421293 G A SORL1 Splice_Site p.X727_splice 0.29 TCGA-HU-A4GU-01 11 1216371 1216371 G A MUC5AC RNA 0.19 TCGA-HU-A4GU-01 11 12234849 12234849 G A MICAL2 Missense_Mutation p.A247T 0.29 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GU-01 11 122756890 122756890 C T C11orf63 Silent p.G111G 0.35 TCGA-HU-A4GU-01 11 122775925 122775925 T - C11orf63 Intron 0.26 TCGA-HU-A4GU-01 11 12281414 12281414 G A MICAL2 Missense_Mutation p.A1102T 0.36 tolerated_low_confidence(0.46) benign(0.086) TCGA-HU-A4GU-01 11 124747437 124747437 G A ROBO3 Missense_Mutation p.A957T 0.27 tolerated(0.23) benign(0.018) TCGA-HU-A4GU-01 11 1261607 1261607 T C MUC5B Splice_Site p.X1324_splice 0.22 TCGA-HU-A4GU-01 11 133792519 133792519 G T IGSF9B Silent p.T742T 0.30 TCGA-HU-A4GU-01 11 18422497 18422497 A C LDHA Missense_Mutation p.I149L 0.24 deleterious(0.03) possibly_damaging(0.532) TCGA-HU-A4GU-01 11 2156684 2156684 C T IGF2 Missense_Mutation p.A80T 0.17 deleterious(0.01) probably_damaging(0.977) TCGA-HU-A4GU-01 11 26586878 26586878 A C MUC15 Silent p.T203T 0.25 TCGA-HU-A4GU-01 11 26664848 26664848 C T ANO3 Missense_Mutation p.R799W 0.20 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GU-01 11 31822286 31822286 C T PAX6 Missense_Mutation p.R173H 0.25 tolerated(0.16) benign(0.001) TCGA-HU-A4GU-01 11 33050184 33050184 C T DEPDC7 Missense_Mutation p.R210C 0.14 deleterious(0) probably_damaging(0.997) TCGA-HU-A4GU-01 11 34527192 34527192 G T ELF5 Silent p.A45A 0.20 TCGA-HU-A4GU-01 11 35198160 35198160 G A CD44 Missense_Mutation p.V36M 0.24 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GU-01 11 35515662 35515662 A G PAMR1 Missense_Mutation p.S78P 0.30 tolerated(1) benign(0.109) TCGA-HU-A4GU-01 11 3845620 3845620 C A PGAP2 Intron 0.25 TCGA-HU-A4GU-01 11 3846314 3846314 C T PGAP2 Missense_Mutation p.A258V 0.23 deleterious(0.05) probably_damaging(0.966) TCGA-HU-A4GU-01 11 3849243 3849243 C T RHOG Silent p.A42A 0.06 TCGA-HU-A4GU-01 11 408790 408790 G T SIGIRR Silent p.V37V 0.20 TCGA-HU-A4GU-01 11 4409697 4409697 C T TRIM21 Missense_Mutation p.V190I 0.24 tolerated(0.2) benign(0.055) TCGA-HU-A4GU-01 11 4411368 4411368 C T TRIM21 Missense_Mutation p.R91Q 0.28 tolerated(0.27) benign(0.002) TCGA-HU-A4GU-01 11 45671251 45671251 C T CHST1 Missense_Mutation p.R408H 0.22 tolerated(0.59) benign(0) TCGA-HU-A4GU-01 11 45832610 45832610 C T SLC35C1 Silent p.G273G 0.30 TCGA-HU-A4GU-01 11 45936019 45936019 G A PEX16 Missense_Mutation p.T181M 0.35 deleterious(0.01) probably_damaging(0.919) TCGA-HU-A4GU-01 11 45937794 45937794 C T PEX16 Missense_Mutation p.R70Q 0.55 tolerated(0.64) benign(0.014) TCGA-HU-A4GU-01 11 46389218 46389218 G T DGKZ Missense_Mutation p.G285V 0.31 deleterious(0) probably_damaging(0.972) TCGA-HU-A4GU-01 11 46748106 46748106 C T F2 Silent p.I311I 0.49 TCGA-HU-A4GU-01 11 46751085 46751085 G A F2 Missense_Mutation p.R543H 0.21 deleterious(0.03) benign(0.067) TCGA-HU-A4GU-01 11 47202114 47202114 C T PACSIN3 Nonsense_Mutation p.W113* 0.31 TCGA-HU-A4GU-01 11 47776173 47776173 A G FNBP4 Silent p.D119D 0.08 TCGA-HU-A4GU-01 11 48146561 48146561 G A PTPRJ Missense_Mutation p.A306T 0.30 tolerated(0.45) benign(0.001) TCGA-HU-A4GU-01 11 48152048 48152048 C T PTPRJ Silent p.V465V 0.21 TCGA-HU-A4GU-01 11 48285736 48285736 T G OR4X1 Silent p.T108T 0.26 TCGA-HU-A4GU-01 11 49831752 49831752 T C RP11-707M1.1 RNA 0.21 TCGA-HU-A4GU-01 11 49831882 49831882 A C RP11-707M1.1 RNA 0.33 TCGA-HU-A4GU-01 11 51515685 51515685 A C OR4C46 Missense_Mutation p.N135T 0.33 tolerated_low_confidence(0.06) benign(0.126) TCGA-HU-A4GU-01 11 5248202 5248202 C - HBB Frame_Shift_Del p.G17Afs*3 0.16 TCGA-HU-A4GU-01 11 55033087 55033087 A G TRIM48 Silent p.L157L 0.57 TCGA-HU-A4GU-01 11 554076 554076 C T LRRC56 Missense_Mutation p.R477C 0.30 deleterious(0) probably_damaging(0.961) TCGA-HU-A4GU-01 11 55944805 55944805 T G OR5J2 Missense_Mutation p.F238V 0.23 deleterious(0.01) possibly_damaging(0.896) TCGA-HU-A4GU-01 11 56020329 56020329 T G OR5T3 Silent p.S218S 0.22 TCGA-HU-A4GU-01 11 56237670 56237670 A C OR5M3 Missense_Mutation p.F102V 0.25 deleterious(0.03) benign(0.164) TCGA-HU-A4GU-01 11 56237805 56237805 T C OR5M3 Missense_Mutation p.M57V 0.26 deleterious(0) possibly_damaging(0.495) TCGA-HU-A4GU-01 11 56409116 56409116 C T OR5AP2 Missense_Mutation p.R267H 0.07 deleterious(0.04) benign(0.081) TCGA-HU-A4GU-01 11 56468771 56468771 T G OR9G1 Missense_Mutation p.L303R 0.09 deleterious(0) possibly_damaging(0.643) TCGA-HU-A4GU-01 11 57947126 57947126 C T OR9Q1 Silent p.D70D 0.19 TCGA-HU-A4GU-01 11 5810019 5810019 T A OR52N1 Missense_Mutation p.T10S 0.18 tolerated(0.25) benign(0.009) TCGA-HU-A4GU-01 11 58920650 58920651 - A FAM111A Frame_Shift_Ins p.A506Sfs*23 0.27 TCGA-HU-A4GU-01 11 60543165 60543165 G A MS4A15 Missense_Mutation p.A234T 0.28 deleterious(0) possibly_damaging(0.543) TCGA-HU-A4GU-01 11 60688430 60688430 G A TMEM109 Missense_Mutation p.A104T 0.22 deleterious(0.04) probably_damaging(0.999) TCGA-HU-A4GU-01 11 61048268 61048268 G A VWCE Silent p.C409C 0.30 TCGA-HU-A4GU-01 11 61491028 61491028 C T DAGLA Missense_Mutation p.R178W 0.24 deleterious(0) possibly_damaging(0.846) TCGA-HU-A4GU-01 11 61732559 61732559 C A FTH1 Missense_Mutation p.S96I 0.28 deleterious(0.02) benign(0.146) TCGA-HU-A4GU-01 11 62287566 62287566 C T AHNAK Missense_Mutation p.D4775N 0.24 possibly_damaging(0.664) TCGA-HU-A4GU-01 11 62378607 62378607 C T EML3 Missense_Mutation p.G135D 0.53 tolerated(0.2) probably_damaging(0.998) TCGA-HU-A4GU-01 11 6291368 6291368 C T CCKBR Missense_Mutation p.R152W 0.24 deleterious(0) probably_damaging(1) TCGA-HU-A4GU-01 11 63064880 63064880 C A SLC22A10 Missense_Mutation p.F204L 0.19 deleterious(0.02) possibly_damaging(0.539) TCGA-HU-A4GU-01 11 63883698 63883698 G T FLRT1 5'UTR 0.28 TCGA-HU-A4GU-01 11 64329769 64329769 C T SLC22A11 Missense_Mutation p.A228V 0.24 tolerated(0.16) benign(0.094) TCGA-HU-A4GU-01 11 64453195 64453195 C T NRXN2 Missense_Mutation p.A359T 0.24 tolerated(0.1) benign(0.133) TCGA-HU-A4GU-01 11 64527495 64527495 G A PYGM 5'UTR 0.45 TCGA-HU-A4GU-01 11 64597443 64597443 C T CDC42BPG Missense_Mutation p.R1156H 0.21 tolerated(0.38) probably_damaging(1) TCGA-HU-A4GU-01 11 6461447 6461447 C T HPX Missense_Mutation p.S95N 0.31 tolerated(0.39) benign(0.022) TCGA-HU-A4GU-01 11 65391432 65391432 C T PCNXL3 Silent p.H848H 0.25 TCGA-HU-A4GU-01 11 65653077 65653077 T - FIBP Frame_Shift_Del p.K190Nfs*5 0.25 TCGA-HU-A4GU-01 11 66190222 66190222 C T NPAS4 Nonsense_Mutation p.R170* 0.28 TCGA-HU-A4GU-01 11 66393136 66393136 G A RBM14 Missense_Mutation p.A597T 0.42 tolerated(0.8) unknown(0) TCGA-HU-A4GU-01 11 66802126 66802126 C - SYT12 Frame_Shift_Del p.P17Lfs*21 0.23 TCGA-HU-A4GU-01 11 67266215 67266215 C T PITPNM1 Missense_Mutation p.A446T 0.27 tolerated(0.44) benign(0.001) TCGA-HU-A4GU-01 11 67266285 67266285 C A PITPNM1 Missense_Mutation p.E422D 0.26 tolerated(0.41) benign(0.07) TCGA-HU-A4GU-01 11 67267649 67267649 G - PITPNM1 Frame_Shift_Del p.P295Qfs*74 0.25 TCGA-HU-A4GU-01 11 67434057 67434057 C T ALDH3B2 Missense_Mutation p.A47T 0.32 deleterious(0) probably_damaging(1) TCGA-HU-A4GU-01 11 68125290 68125290 C T LRP5 Missense_Mutation p.R221C 0.32 tolerated(0.09) probably_damaging(0.932) TCGA-HU-A4GU-01 11 68369411 68369411 C T PPP6R3 Missense_Mutation p.A758V 0.20 tolerated(0.39) benign(0.002) TCGA-HU-A4GU-01 11 68475967 68475967 G A MTL5 Missense_Mutation p.R446W 0.24 tolerated(0.12) benign(0.007) TCGA-HU-A4GU-01 11 68673617 68673617 G A IGHMBP2 Missense_Mutation p.R56H 0.29 tolerated(0.06) benign(0.033) TCGA-HU-A4GU-01 11 68747523 68747523 C T MRGPRD Silent p.T311T 0.23 TCGA-HU-A4GU-01 11 71724998 71724998 G A NUMA1 Missense_Mutation p.A1184V 0.36 benign(0.341) TCGA-HU-A4GU-01 11 71847078 71847078 C T FOLR3 Missense_Mutation p.A27V 0.19 tolerated(0.33) benign(0) TCGA-HU-A4GU-01 11 71942042 71942042 G A INPPL1 Missense_Mutation p.V436I 0.21 tolerated(0.22) benign(0.027) TCGA-HU-A4GU-01 11 73105738 73105738 G T RELT Missense_Mutation p.K335N 0.12 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GU-01 11 73372524 73372524 G A PLEKHB1 Silent p.T203T 0.21 TCGA-HU-A4GU-01 11 74617353 74617353 T A XRRA1 Missense_Mutation p.M304L 0.06 tolerated(0.39) benign(0.007) TCGA-HU-A4GU-01 11 76261110 76261110 G A C11orf30 Missense_Mutation p.A1297T 0.18 tolerated_low_confidence(0.05) benign(0.002) TCGA-HU-A4GU-01 11 7817741 7817741 G A OR5P2 Missense_Mutation p.T250I 0.23 deleterious(0) probably_damaging(0.977) TCGA-HU-A4GU-01 11 7982833 7982833 A G NLRP10 Missense_Mutation p.L109P 0.31 deleterious(0.04) probably_damaging(0.91) TCGA-HU-A4GU-01 11 85407243 85407243 C T SYTL2 Missense_Mutation p.R1219H 0.23 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GU-01 11 85626507 85626507 A C CCDC83 Missense_Mutation p.E311D 0.27 tolerated(0.21) benign(0.081) TCGA-HU-A4GU-01 11 86152298 86152298 C A ME3 3'UTR 0.21 TCGA-HU-A4GU-01 11 8751553 8751553 C T ST5 Silent p.P428P 0.26 TCGA-HU-A4GU-01 11 92258014 92258014 G A FAT3 Silent p.Q1169Q 0.41 TCGA-HU-A4GU-01 11 93800812 93800812 C T HEPHL1 Missense_Mutation p.T320I 0.28 tolerated(0.22) possibly_damaging(0.794) TCGA-HU-A4GU-01 11 970244 970244 A G AP2A2 Missense_Mutation p.D71G 0.27 tolerated(0.06) benign(0.028) TCGA-HU-A4GU-01 12 100431311 100431311 C T UHRF1BP1L 3'UTR 0.22 TCGA-HU-A4GU-01 12 100613858 100613858 G A ACTR6 Missense_Mutation p.R332Q 0.28 deleterious(0) probably_damaging(0.96) TCGA-HU-A4GU-01 12 100813745 100813745 C T SLC17A8 Silent p.D526D 0.22 TCGA-HU-A4GU-01 12 101430912 101430912 C T ANO4 Missense_Mutation p.A259V 0.07 deleterious(0) probably_damaging(0.947) TCGA-HU-A4GU-01 12 101723149 101723149 C T UTP20 Silent p.S1113S 0.26 TCGA-HU-A4GU-01 12 102155084 102155084 G A GNPTAB Missense_Mutation p.R986C 0.21 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GU-01 12 10233962 10233962 T C CLEC1A Missense_Mutation p.M89V 0.17 tolerated(0.14) benign(0.002) TCGA-HU-A4GU-01 12 104732931 104732931 C A TXNRD1 Silent p.G587G 0.16 TCGA-HU-A4GU-01 12 10603633 10603633 C T KLRC1 Silent p.A41A 0.18 TCGA-HU-A4GU-01 12 10856665 10856665 C T YBX3 Missense_Mutation p.R288H 0.31 deleterious(0.02) benign(0.01) TCGA-HU-A4GU-01 12 109577565 109577565 G A ACACB Missense_Mutation p.G119R 0.34 tolerated_low_confidence(0.11) benign(0.002) TCGA-HU-A4GU-01 12 10978282 10978282 A - TAS2R10 Frame_Shift_Del p.L196* 0.22 TCGA-HU-A4GU-01 12 110019240 110019240 C - MVK Frame_Shift_Del p.A141Rfs*18 0.23 TCGA-HU-A4GU-01 12 110221343 110221343 G - TRPV4 3'UTR 0.16 TCGA-HU-A4GU-01 12 110354485 110354485 C T TCHP 3'UTR 0.25 TCGA-HU-A4GU-01 12 11091555 11091555 C T TAS2R14 Missense_Mutation p.M84I 0.18 tolerated(1) benign(0.007) TCGA-HU-A4GU-01 12 112235973 112235973 C T ALDH2 Missense_Mutation p.A392V 0.28 deleterious(0) benign(0.061) TCGA-HU-A4GU-01 12 112610662 112610662 G A HECTD4 Silent p.C3720C 0.16 TCGA-HU-A4GU-01 12 112843672 112843672 G A RPL6 Silent p.F233F 0.13 TCGA-HU-A4GU-01 12 112924508 112924508 C A PTPN11 Intron 0.40 TCGA-HU-A4GU-01 12 113348938 113348938 C T OAS1 Silent p.G184G 0.19 TCGA-HU-A4GU-01 12 113603681 113603681 G A DDX54 Missense_Mutation p.P524L 0.33 deleterious(0.02) possibly_damaging(0.835) TCGA-HU-A4GU-01 12 113618785 113618785 C T DDX54 Missense_Mutation p.V85M 0.28 deleterious(0) possibly_damaging(0.774) TCGA-HU-A4GU-01 12 117672391 117672391 C G NOS1 Missense_Mutation p.E1106Q 0.35 tolerated(0.27) benign(0.441) TCGA-HU-A4GU-01 12 117768790 117768790 C A NOS1 Nonsense_Mutation p.G29* 0.22 TCGA-HU-A4GU-01 12 118511549 118511549 T G VSIG10 Missense_Mutation p.S392R 0.27 deleterious(0) benign(0.158) TCGA-HU-A4GU-01 12 121426831 121426831 G A HNF1A Silent p.A174A 0.12 TCGA-HU-A4GU-01 12 121434361 121434361 C - HNF1A Frame_Shift_Del p.L377Sfs*7 0.25 TCGA-HU-A4GU-01 12 121441903 121441903 G - C12orf43 3'UTR 0.28 TCGA-HU-A4GU-01 12 121603953 121603953 G A P2RX7 Missense_Mutation p.R236Q 0.25 tolerated(1) benign(0.006) TCGA-HU-A4GU-01 12 122675924 122675924 C A LRRC43 Intron 0.37 TCGA-HU-A4GU-01 12 122691422 122691422 C - B3GNT4 Frame_Shift_Del p.Q210Rfs*6 0.18 TCGA-HU-A4GU-01 12 122845618 122845618 C G CLIP1 Missense_Mutation p.R298P 0.25 deleterious(0) probably_damaging(0.994) TCGA-HU-A4GU-01 12 123187301 123187301 C T HCAR2 Missense_Mutation p.C177Y 0.23 deleterious(0) probably_damaging(1) TCGA-HU-A4GU-01 12 123794266 123794266 C A SBNO1 Nonsense_Mutation p.G1145* 0.21 TCGA-HU-A4GU-01 12 123805365 123805365 T - SBNO1 Frame_Shift_Del p.K791Rfs*5 0.21 TCGA-HU-A4GU-01 12 124265729 124265729 C T DNAH10 Missense_Mutation p.P181S 0.23 benign(0.001) TCGA-HU-A4GU-01 12 124395130 124395130 A G DNAH10 Missense_Mutation p.S3231G 0.21 probably_damaging(0.998) TCGA-HU-A4GU-01 12 132283990 132283990 C T SFSWAP Missense_Mutation p.A990V 0.39 deleterious_low_confidence(0) unknown(0) TCGA-HU-A4GU-01 12 132537749 132537749 C T EP400 Nonsense_Mutation p.R2485* 0.07 TCGA-HU-A4GU-01 12 132681647 132681647 T G GALNT9 3'UTR 0.28 TCGA-HU-A4GU-01 12 133210909 133210909 T C POLE Missense_Mutation p.E1956G 0.32 tolerated(0.08) benign(0.001) TCGA-HU-A4GU-01 12 133220111 133220111 G A POLE Silent p.G1442G 0.25 TCGA-HU-A4GU-01 12 133354354 133354354 C T GOLGA3 Missense_Mutation p.R1207H 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-HU-A4GU-01 12 133372766 133372766 G A GOLGA3 Missense_Mutation p.A714V 0.14 tolerated(0.27) benign(0.02) TCGA-HU-A4GU-01 12 13717545 13717545 G A GRIN2B Missense_Mutation p.A876V 0.28 deleterious(0.01) benign(0.234) TCGA-HU-A4GU-01 12 13906258 13906258 G T GRIN2B Missense_Mutation p.L335I 0.22 tolerated(0.14) benign(0.025) TCGA-HU-A4GU-01 12 14018818 14018818 C T GRIN2B Missense_Mutation p.A109T 0.29 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GU-01 12 15819381 15819381 C T EPS8 Missense_Mutation p.A198T 0.25 tolerated(1) benign(0.007) TCGA-HU-A4GU-01 12 16753748 16753748 C T LMO3 Missense_Mutation p.C16Y 0.08 deleterious(0) probably_damaging(0.977) TCGA-HU-A4GU-01 12 20885884 20885884 G - SLCO1C1 Frame_Shift_Del p.I412* 0.16 TCGA-HU-A4GU-01 12 20890154 20890154 T C SLCO1C1 Missense_Mutation p.V499A 0.23 tolerated(0.57) benign(0.019) TCGA-HU-A4GU-01 12 21797028 21797028 C T LDHB Missense_Mutation p.A88T 0.20 tolerated(0.06) benign(0.08) TCGA-HU-A4GU-01 12 248367 248367 C T IQSEC3 Missense_Mutation p.A613V 0.38 tolerated(0.63) benign(0) TCGA-HU-A4GU-01 12 2566843 2566843 G A CACNA1C Missense_Mutation p.R243H 0.08 deleterious(0) probably_damaging(0.972) TCGA-HU-A4GU-01 12 27950952 27950952 C T KLHL42 Silent p.D457D 0.31 TCGA-HU-A4GU-01 12 2800254 2800254 C T CACNA1C Silent p.D2150D 0.17 TCGA-HU-A4GU-01 12 28116524 28116524 C T PTHLH Missense_Mutation p.R94Q 0.25 tolerated(0.08) probably_damaging(0.98) TCGA-HU-A4GU-01 12 29502999 29502999 G A ERGIC2 Missense_Mutation p.A192V 0.20 deleterious(0.02) benign(0.063) TCGA-HU-A4GU-01 12 32735435 32735435 A C FGD4 Intron 0.27 TCGA-HU-A4GU-01 12 32772677 32772677 G T FGD4 Missense_Mutation p.G462C 0.27 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GU-01 12 33532872 33532872 T C SYT10 Silent p.G465G 0.29 TCGA-HU-A4GU-01 12 336795 336795 C T SLC6A13 Missense_Mutation p.A291T 0.21 deleterious(0) probably_damaging(1) TCGA-HU-A4GU-01 12 34178860 34178860 T - ALG10 Frame_Shift_Del p.F146Lfs*20 0.19 TCGA-HU-A4GU-01 12 39763594 39763594 T - KIF21A Frame_Shift_Del p.K129Nfs*3 0.24 TCGA-HU-A4GU-01 12 40223908 40223908 C - SLC2A13 Frame_Shift_Del p.G481Afs*51 0.19 TCGA-HU-A4GU-01 12 40422177 40422177 C T SLC2A13 Missense_Mutation p.G284D 0.17 deleterious(0.03) possibly_damaging(0.819) TCGA-HU-A4GU-01 12 40722217 40722217 T C LRRK2 Silent p.A1904A 0.26 TCGA-HU-A4GU-01 12 427487 427487 C T KDM5A Silent p.L894L 0.26 TCGA-HU-A4GU-01 12 4919170 4919170 C T KCNA6 5'UTR 0.44 TCGA-HU-A4GU-01 12 49431843 49431843 C T KMT2D Missense_Mutation p.R3099H 0.19 benign(0.011) TCGA-HU-A4GU-01 12 49432426 49432426 G A KMT2D Missense_Mutation p.R2905C 0.26 probably_damaging(0.95) TCGA-HU-A4GU-01 12 49491834 49491834 T C LMBR1L Missense_Mutation p.N432S 0.49 tolerated(0.08) benign(0.009) TCGA-HU-A4GU-01 12 49724418 49724418 C A TROAP Missense_Mutation p.P597H 0.20 deleterious_low_confidence(0) possibly_damaging(0.794) TCGA-HU-A4GU-01 12 49742746 49742746 G A DNAJC22 Missense_Mutation p.A31T 0.20 deleterious(0) probably_damaging(0.951) TCGA-HU-A4GU-01 12 5154774 5154774 G A KCNA5 Silent p.R487R 0.06 TCGA-HU-A4GU-01 12 52309876 52309876 A G ACVRL1 Missense_Mutation p.R369G 0.08 deleterious(0) probably_damaging(1) TCGA-HU-A4GU-01 12 52845468 52845468 G - KRT6B Frame_Shift_Del p.P132Lfs*14 0.15 TCGA-HU-A4GU-01 12 52864299 52864299 A G KRT6C Missense_Mutation p.V398A 0.14 tolerated(0.18) probably_damaging(0.963) TCGA-HU-A4GU-01 12 52884403 52884403 C T KRT6A Missense_Mutation p.E343K 0.26 deleterious(0.01) possibly_damaging(0.643) TCGA-HU-A4GU-01 12 52981513 52981513 T C KRT72 Silent p.A404A 0.05 TCGA-HU-A4GU-01 12 53682349 53682349 A T ESPL1 Missense_Mutation p.E1525V 0.22 tolerated(0.08) benign(0.042) TCGA-HU-A4GU-01 12 54350255 54350255 A G HOXC12 Missense_Mutation p.N252D 0.24 tolerated(0.09) possibly_damaging(0.738) TCGA-HU-A4GU-01 12 54379024 54379024 A - HOXC10 5'UTR 0.20 TCGA-HU-A4GU-01 12 54765373 54765373 G A ZNF385A Missense_Mutation p.P183L 0.47 deleterious(0.02) benign(0.088) TCGA-HU-A4GU-01 12 54925968 54925968 C T NCKAP1L Silent p.H932H 0.19 TCGA-HU-A4GU-01 12 54936433 54936433 C A NCKAP1L Silent p.A1116A 0.16 TCGA-HU-A4GU-01 12 55524524 55524524 A - OR9K2 Frame_Shift_Del p.K326Nfs*3 0.26 TCGA-HU-A4GU-01 12 55714399 55714399 G T OR6C1 Nonsense_Mutation p.E6* 0.23 TCGA-HU-A4GU-01 12 56495025 56495025 G A ERBB3 Missense_Mutation p.G1128R 0.24 tolerated(0.39) possibly_damaging(0.545) TCGA-HU-A4GU-01 12 56647935 56647935 C T ANKRD52 Silent p.T274T 0.22 TCGA-HU-A4GU-01 12 56712865 56712876 AACTCACCCAGA - PAN2 Splice_Site p.X1124_splice 0.29 TCGA-HU-A4GU-01 12 56815562 56815562 C - TIMELESS Frame_Shift_Del p.D892Ifs*24 0.19 TCGA-HU-A4GU-01 12 56847486 56847486 C T MIP Silent p.T138T 0.26 TCGA-HU-A4GU-01 12 56868661 56868661 T C GLS2 Missense_Mutation p.D339G 0.27 tolerated(0.06) benign(0.135) TCGA-HU-A4GU-01 12 57627083 57627083 C - SHMT2 Frame_Shift_Del p.H328Tfs*8 0.15 TCGA-HU-A4GU-01 12 57920934 57920934 C - MBD6 Frame_Shift_Del p.P671Lfs*4 0.22 TCGA-HU-A4GU-01 12 58021960 58021960 G A B4GALNT1 Missense_Mutation p.A363V 0.20 tolerated(0.16) possibly_damaging(0.521) TCGA-HU-A4GU-01 12 6561438 6561438 C T TAPBPL Silent p.C8C 0.44 TCGA-HU-A4GU-01 12 6657973 6657974 - C IFFO1 Frame_Shift_Ins p.R367Afs*19 0.29 TCGA-HU-A4GU-01 12 66696387 66696387 G A HELB Missense_Mutation p.A2T 0.35 deleterious(0) unknown(0) TCGA-HU-A4GU-01 12 68719112 68719112 C T MDM1 Intron 0.12 TCGA-HU-A4GU-01 12 6881944 6881944 C A LAG3 5'UTR 0.27 TCGA-HU-A4GU-01 12 69222698 69222698 C T MDM2 Missense_Mutation p.T224M 0.21 tolerated(0.07) probably_damaging(0.997) TCGA-HU-A4GU-01 12 6975193 6975193 G A USP5 Silent p.P843P 0.18 TCGA-HU-A4GU-01 12 7178060 7178060 C A C1S 3'UTR 0.56 TCGA-HU-A4GU-01 12 7310099 7310099 G A CLSTN3 Missense_Mutation p.A848T 0.20 deleterious(0) possibly_damaging(0.581) TCGA-HU-A4GU-01 12 75444468 75444468 A C KCNC2 Silent p.G439G 0.25 TCGA-HU-A4GU-01 12 77436971 77436971 G A E2F7 Nonsense_Mutation p.R333* 0.04 TCGA-HU-A4GU-01 12 7869689 7869690 - T DPPA3 3'UTR 0.25 TCGA-HU-A4GU-01 12 80749652 80749652 G A OTOGL Silent p.T1901T 0.29 TCGA-HU-A4GU-01 12 8205482 8205482 G A FOXJ2 3'UTR 0.33 TCGA-HU-A4GU-01 12 8211428 8211428 C A C3AR1 Nonsense_Mutation p.G452* 0.19 TCGA-HU-A4GU-01 12 8211804 8211804 G A C3AR1 Silent p.D326D 0.25 TCGA-HU-A4GU-01 12 8375292 8375292 G T FAM90A1 Missense_Mutation p.S174Y 0.21 deleterious(0.03) possibly_damaging(0.87) TCGA-HU-A4GU-01 12 85531634 85531634 T A LRRIQ1 Missense_Mutation p.W1406R 0.23 deleterious(0) probably_damaging(1) TCGA-HU-A4GU-01 12 85554491 85554491 A C LRRIQ1 Missense_Mutation p.E1607D 0.22 deleterious(0.01) possibly_damaging(0.64) TCGA-HU-A4GU-01 12 88379656 88379656 T A C12orf50 Missense_Mutation p.N366I 0.26 tolerated(0.24) benign(0.413) TCGA-HU-A4GU-01 12 88554465 88554465 C T TMTC3 Missense_Mutation p.P212S 0.09 tolerated(0.56) benign(0.219) TCGA-HU-A4GU-01 12 89998030 89998030 G A ATP2B1 Nonsense_Mutation p.R846* 0.36 TCGA-HU-A4GU-01 12 9004899 9004899 A C A2ML1 Missense_Mutation p.T853P 0.23 deleterious(0) probably_damaging(0.933) TCGA-HU-A4GU-01 12 9083192 9083192 A G PHC1 Silent p.T258T 0.16 TCGA-HU-A4GU-01 12 91358060 91358060 A G EPYC Missense_Mutation p.V281A 0.25 tolerated(0.69) benign(0.002) TCGA-HU-A4GU-01 12 93181723 93181723 T - EEA1 Frame_Shift_Del p.S1024Vfs*20 0.10 TCGA-HU-A4GU-01 12 96288870 96288870 A - CCDC38 Frame_Shift_Del p.L224Cfs*15 0.24 TCGA-HU-A4GU-01 12 98926822 98926822 G T TMPO Missense_Mutation p.G263C 0.25 deleterious_low_confidence(0) possibly_damaging(0.65) TCGA-HU-A4GU-01 13 101277794 101277794 G A TMTC4 Missense_Mutation p.R611C 0.08 deleterious(0.05) benign(0.247) TCGA-HU-A4GU-01 13 102227785 102227785 C A ITGBL1 Missense_Mutation p.H158Q 0.25 tolerated(0.49) benign(0.001) TCGA-HU-A4GU-01 13 102568842 102568842 G A FGF14 Intron 0.25 TCGA-HU-A4GU-01 13 103443739 103443739 G A KDELC1 Silent p.D238D 0.07 TCGA-HU-A4GU-01 13 109779804 109779804 G A MYO16 Silent p.P1297P 0.21 TCGA-HU-A4GU-01 13 113731454 113731454 G T MCF2L Missense_Mutation p.R530M 0.26 deleterious(0.03) possibly_damaging(0.69) TCGA-HU-A4GU-01 13 113783775 113783775 G A F10 Missense_Mutation p.R27H 0.23 tolerated(0.08) benign(0.188) TCGA-HU-A4GU-01 13 114781736 114781736 G A RASA3 Silent p.S406S 0.22 TCGA-HU-A4GU-01 13 20763535 20763535 G A GJB2 Silent p.N62N 0.25 TCGA-HU-A4GU-01 13 23942607 23942607 C T SACS Silent p.T93T 0.17 TCGA-HU-A4GU-01 13 27250695 27250695 C T WASF3 Missense_Mutation p.R184C 0.28 deleterious(0.01) benign(0.001) TCGA-HU-A4GU-01 13 27255386 27255387 - C WASF3 Frame_Shift_Ins p.P308Afs*29 0.45 TCGA-HU-A4GU-01 13 28880898 28880898 G A FLT1 Silent p.G1244G 0.31 TCGA-HU-A4GU-01 13 32930746 32930746 G T BRCA2 Missense_Mutation p.Q2539H 0.28 deleterious(0) possibly_damaging(0.824) TCGA-HU-A4GU-01 13 33226030 33226030 T - PDS5B Frame_Shift_Del p.L69Sfs*12 0.24 TCGA-HU-A4GU-01 13 33591332 33591332 C T KL Missense_Mutation p.R252C 0.14 deleterious(0.03) probably_damaging(0.943) TCGA-HU-A4GU-01 13 34404130 34404130 T G RFC3 Silent p.R183R 0.19 TCGA-HU-A4GU-01 13 37269551 37269551 G A SERTM1 3'UTR 0.22 TCGA-HU-A4GU-01 13 38153466 38153466 A C POSTN Missense_Mutation p.L564R 0.27 tolerated(0.64) probably_damaging(1) TCGA-HU-A4GU-01 13 38160332 38160332 T A POSTN Missense_Mutation p.E280V 0.29 deleterious(0.01) possibly_damaging(0.85) TCGA-HU-A4GU-01 13 38211353 38211353 T C TRPC4 Missense_Mutation p.Q879R 0.36 tolerated_low_confidence(0.22) possibly_damaging(0.466) TCGA-HU-A4GU-01 13 39263279 39263279 C A FREM2 Missense_Mutation p.L600M 0.24 tolerated(0.05) probably_damaging(0.965) TCGA-HU-A4GU-01 13 39425965 39425965 C T FREM2 Silent p.G2295G 0.11 TCGA-HU-A4GU-01 13 41134405 41134405 G A FOXO1 Missense_Mutation p.A408V 0.22 tolerated(0.31) benign(0.207) TCGA-HU-A4GU-01 13 42873547 42873547 C T AKAP11 Missense_Mutation p.T222M 0.27 deleterious(0) probably_damaging(1) TCGA-HU-A4GU-01 13 42882736 42882736 T C AKAP11 Missense_Mutation p.L1755P 0.24 deleterious(0) probably_damaging(1) TCGA-HU-A4GU-01 13 45915208 45915208 G A TPT1 5'UTR 0.14 TCGA-HU-A4GU-01 13 46543691 46543691 T - ZC3H13 Frame_Shift_Del p.G997Dfs*40 0.10 TCGA-HU-A4GU-01 13 46549790 46549790 C T ZC3H13 Missense_Mutation p.R699Q 0.36 unknown(0) TCGA-HU-A4GU-01 13 50204971 50204971 C G ARL11 Missense_Mutation p.L130V 0.74 tolerated(0.06) probably_damaging(0.957) TCGA-HU-A4GU-01 13 53420187 53420187 C T PCDH8 Silent p.A795A 0.84 TCGA-HU-A4GU-01 13 53420267 53420267 C T PCDH8 Missense_Mutation p.A769T 0.17 tolerated(0.37) benign(0.004) TCGA-HU-A4GU-01 13 67801805 67801805 T C PCDH9 Silent p.Q256Q 0.18 TCGA-HU-A4GU-01 13 72255949 72255949 A G DACH1 Silent p.S316S 0.20 TCGA-HU-A4GU-01 13 77656029 77656029 G A MYCBP2 Silent p.G3674G 0.37 TCGA-HU-A4GU-01 13 77724964 77724964 T C MYCBP2 Missense_Mutation p.M2308V 0.05 benign(0.009) TCGA-HU-A4GU-01 13 78337291 78337291 C A SLAIN1 Missense_Mutation p.P406H 0.22 deleterious(0) probably_damaging(0.979) TCGA-HU-A4GU-01 13 78475267 78475267 A - EDNRB Frame_Shift_Del p.Y383Ifs*3 0.19 TCGA-HU-A4GU-01 13 79175910 79175910 G A POU4F1 Silent p.G300G 0.30 TCGA-HU-A4GU-01 13 79190057 79190057 A - RNF219 Frame_Shift_Del p.L614Sfs*9 0.33 TCGA-HU-A4GU-01 13 97995269 97995269 G A MBNL2 Splice_Site p.X114_splice 0.21 TCGA-HU-A4GU-01 13 98829459 98829459 G A RNF113B Missense_Mutation p.A11V 0.19 tolerated_low_confidence(0.06) benign(0.064) TCGA-HU-A4GU-01 13 99061770 99061770 C T FARP1 Silent p.G531G 0.35 TCGA-HU-A4GU-01 14 103573803 103573803 G A EXOC3L4 Missense_Mutation p.D542N 0.28 deleterious(0) possibly_damaging(0.734) TCGA-HU-A4GU-01 14 105414444 105414444 G A AHNAK2 Silent p.S2448S 0.29 TCGA-HU-A4GU-01 14 105419396 105419396 T C AHNAK2 Missense_Mutation p.S798G 0.20 benign(0.279) TCGA-HU-A4GU-01 14 105954583 105954583 G - CRIP1 Frame_Shift_Del p.G42Afs*? 0.23 TCGA-HU-A4GU-01 14 106091471 106091471 G A IGHG4 Silent p.C141C 0.23 TCGA-HU-A4GU-01 14 20215646 20215646 T C OR4Q3 Silent p.S20S 0.18 TCGA-HU-A4GU-01 14 20295916 20295916 C T OR4N2 Silent p.F103F 0.22 TCGA-HU-A4GU-01 14 21052507 21052507 C A RNASE11 Missense_Mutation p.G43C 0.09 tolerated(0.07) benign(0.007) TCGA-HU-A4GU-01 14 22636807 22636807 A - TRAV30 Frame_Shift_Del p.K89Sfs*? 0.23 TCGA-HU-A4GU-01 14 22951306 22951306 G A TRAJ54 Missense_Mutation p.G11D 0.26 unknown(0) TCGA-HU-A4GU-01 14 23778068 23778068 C T BCL2L2 Missense_Mutation p.A159V 0.26 tolerated(0.35) benign(0.15) TCGA-HU-A4GU-01 14 24031515 24031515 C T AP1G2 Missense_Mutation p.R537H 0.23 deleterious(0) probably_damaging(0.961) TCGA-HU-A4GU-01 14 24045186 24045186 G A JPH4 Missense_Mutation p.R287C 0.20 deleterious(0.01) benign(0.016) TCGA-HU-A4GU-01 14 24531964 24531964 G A LRRC16B Missense_Mutation p.C872Y 0.23 tolerated(1) benign(0) TCGA-HU-A4GU-01 14 24626754 24626754 C T RNF31 Silent p.Y878Y 0.03 TCGA-HU-A4GU-01 14 24718698 24718698 C T TGM1 Missense_Mutation p.V759M 0.07 tolerated(0.28) benign(0.119) TCGA-HU-A4GU-01 14 24798413 24798413 C T ADCY4 Missense_Mutation p.A460T 0.15 tolerated(0.39) benign(0.001) TCGA-HU-A4GU-01 14 26941569 26941569 T G NOVA1 Missense_Mutation p.K159T 0.18 tolerated(0.41) unknown(0) TCGA-HU-A4GU-01 14 30095688 30095688 A T PRKD1 Splice_Site p.X600_splice 0.16 TCGA-HU-A4GU-01 14 31588918 31588918 G - HECTD1 Frame_Shift_Del p.P1798Qfs*20 0.08 TCGA-HU-A4GU-01 14 35234330 35234330 G A BAZ1A Missense_Mutation p.A1149V 0.13 deleterious(0) probably_damaging(0.939) TCGA-HU-A4GU-01 14 35564389 35564389 G A PPP2R3C Silent p.G280G 0.16 TCGA-HU-A4GU-01 14 36190894 36190894 C T RALGAPA1 Missense_Mutation p.D756N 0.12 tolerated(0.06) probably_damaging(0.988) TCGA-HU-A4GU-01 14 51376807 51376807 T C PYGL Silent p.T661T 0.13 TCGA-HU-A4GU-01 14 55895632 55895632 G A TBPL2 Silent p.F283F 0.32 TCGA-HU-A4GU-01 14 57741365 57741365 C T AP5M1 Missense_Mutation p.P160S 0.39 tolerated(0.27) benign(0.002) TCGA-HU-A4GU-01 14 58790255 58790255 C T ARID4A Missense_Mutation p.R168C 0.13 deleterious(0) possibly_damaging(0.796) TCGA-HU-A4GU-01 14 61115595 61115595 C T SIX1 Missense_Mutation p.A105T 0.38 deleterious(0) possibly_damaging(0.824) TCGA-HU-A4GU-01 14 62261793 62261793 A - SNAPC1 3'UTR 0.36 TCGA-HU-A4GU-01 14 62541932 62541932 G T SYT16 Missense_Mutation p.Q272H 0.22 tolerated(0.5) benign(0.008) TCGA-HU-A4GU-01 14 63784472 63784472 C T GPHB5 RNA 0.26 TCGA-HU-A4GU-01 14 65209760 65209760 G T PLEKHG3 Missense_Mutation p.S944I 0.24 deleterious(0) possibly_damaging(0.586) TCGA-HU-A4GU-01 14 68215136 68215136 G A ZFYVE26 3'UTR 0.13 TCGA-HU-A4GU-01 14 70714173 70714173 C A ADAM21P1 RNA 0.39 TCGA-HU-A4GU-01 14 70989840 70989840 A G ADAM20 Silent p.G595G 0.33 TCGA-HU-A4GU-01 14 73976119 73976119 A C HEATR4 Missense_Mutation p.C539W 0.09 tolerated(0.19) possibly_damaging(0.711) TCGA-HU-A4GU-01 14 74961032 74961032 G A ISCA2 Missense_Mutation p.G77S 0.18 deleterious(0) probably_damaging(1) TCGA-HU-A4GU-01 14 76012964 76012964 G A BATF Missense_Mutation p.A110T 0.15 tolerated_low_confidence(1) benign(0.001) TCGA-HU-A4GU-01 14 76243106 76243106 C A TTLL5 Missense_Mutation p.A767D 0.38 tolerated(0.08) possibly_damaging(0.864) TCGA-HU-A4GU-01 14 77245316 77245316 G T VASH1 Missense_Mutation p.E351D 0.23 tolerated(0.56) benign(0.004) TCGA-HU-A4GU-01 14 77302606 77302606 C T C14orf166B Silent p.G149G 0.32 TCGA-HU-A4GU-01 14 81609866 81609866 G A TSHR Nonsense_Mutation p.W488* 0.18 TCGA-HU-A4GU-01 14 86088364 86088364 A C FLRT2 Missense_Mutation p.N169T 0.42 deleterious(0) probably_damaging(1) TCGA-HU-A4GU-01 14 90528736 90528736 G A KCNK13 Missense_Mutation p.G63S 0.33 tolerated(0.76) benign(0.001) TCGA-HU-A4GU-01 14 92472698 92472698 T - TRIP11 Frame_Shift_Del p.K541Rfs*17 0.10 TCGA-HU-A4GU-01 14 93022170 93022170 C T RIN3 Missense_Mutation p.P40L 0.60 tolerated(0.49) unknown(0) TCGA-HU-A4GU-01 14 93760654 93760654 G A BTBD7 Missense_Mutation p.R238C 0.31 deleterious(0.01) possibly_damaging(0.908) TCGA-HU-A4GU-01 14 94526684 94526684 G A DDX24 Missense_Mutation p.A558V 0.24 deleterious(0) possibly_damaging(0.765) TCGA-HU-A4GU-01 14 96986535 96986535 T - PAPOLA Frame_Shift_Del p.F52Lfs*12 0.12 TCGA-HU-A4GU-01 14 99865440 99865440 T G SETD3 Missense_Mutation p.N454T 0.22 tolerated(0.47) benign(0) TCGA-HU-A4GU-01 15 100331220 100331220 G A AC090825.1 5'Flank 0.42 TCGA-HU-A4GU-01 15 101188727 101188727 C T ASB7 3'UTR 0.16 TCGA-HU-A4GU-01 15 102313110 102313110 T G RN7SL209P 3'Flank 0.43 TCGA-HU-A4GU-01 15 102359245 102359245 A G OR4F15 Missense_Mutation p.I286V 0.25 deleterious_low_confidence(0.01) benign(0.125) TCGA-HU-A4GU-01 15 22929769 22929769 G T CYFIP1 Missense_Mutation p.R148M 0.28 deleterious(0) possibly_damaging(0.75) TCGA-HU-A4GU-01 15 23002965 23002965 C T CYFIP1 Silent p.G1229G 0.31 TCGA-HU-A4GU-01 15 23890303 23890303 G - MAGEL2 Frame_Shift_Del p.Q260Rfs*41 0.18 TCGA-HU-A4GU-01 15 25467338 25467338 C A SNORD115-27 3'Flank 0.27 TCGA-HU-A4GU-01 15 26793230 26793230 T C GABRB3 Missense_Mutation p.M378V 0.08 tolerated(1) benign(0) TCGA-HU-A4GU-01 15 26825568 26825568 G A GABRB3 Nonsense_Mutation p.R194* 0.10 TCGA-HU-A4GU-01 15 28196964 28196964 G C OCA2 Silent p.L639L 0.40 TCGA-HU-A4GU-01 15 34638200 34638200 T G NUTM1 5'UTR 0.39 TCGA-HU-A4GU-01 15 38591731 38591731 C T SPRED1 Nonsense_Mutation p.R64* 0.37 TCGA-HU-A4GU-01 15 39886303 39886303 C T THBS1 Missense_Mutation p.R1091C 0.29 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GU-01 15 40558161 40558161 G A PAK6 Missense_Mutation p.R108Q 0.41 tolerated(0.11) probably_damaging(0.995) TCGA-HU-A4GU-01 15 40566340 40566340 C T PAK6 Intron 0.26 TCGA-HU-A4GU-01 15 41870519 41870519 C T TYRO3 3'UTR 0.13 TCGA-HU-A4GU-01 15 42731306 42731306 G A ZNF106 Missense_Mutation p.T1467M 0.40 deleterious(0.03) possibly_damaging(0.542) TCGA-HU-A4GU-01 15 43508551 43508551 C T EPB42 Silent p.Q67Q 0.32 TCGA-HU-A4GU-01 15 44093900 44093900 T C HYPK Intron 0.45 TCGA-HU-A4GU-01 15 45008499 45008499 T - B2M Intron 0.25 TCGA-HU-A4GU-01 15 45453118 45453118 C T DUOX1 Silent p.G1262G 0.23 TCGA-HU-A4GU-01 15 48527143 48527143 T - SLC12A1 Frame_Shift_Del p.F388Sfs*40 0.23 TCGA-HU-A4GU-01 15 48722881 48722881 T C FBN1 Silent p.G2286G 0.47 TCGA-HU-A4GU-01 15 48812973 48812973 G A FBN1 Missense_Mutation p.R344C 0.26 probably_damaging(0.95) TCGA-HU-A4GU-01 15 49422919 49422919 C T COPS2 Missense_Mutation p.E355K 0.25 deleterious(0.02) benign(0.008) TCGA-HU-A4GU-01 15 51799444 51799444 C T DMXL2 Missense_Mutation p.R884H 0.21 tolerated(0.13) possibly_damaging(0.855) TCGA-HU-A4GU-01 15 52244057 52244057 C T LEO1 Missense_Mutation p.R532H 0.20 deleterious(0.02) benign(0.192) TCGA-HU-A4GU-01 15 54847700 54847700 C T UNC13C Missense_Mutation p.A1983V 0.15 deleterious_low_confidence(0.04) benign(0.052) TCGA-HU-A4GU-01 15 55972291 55972291 G A PRTG Missense_Mutation p.R312C 0.09 deleterious(0) probably_damaging(1) TCGA-HU-A4GU-01 15 58430791 58430791 A - AQP9 Frame_Shift_Del p.S11Afs*8 0.09 TCGA-HU-A4GU-01 15 59182636 59182637 CT - SLTM Frame_Shift_Del p.E641Afs*8 0.18 TCGA-HU-A4GU-01 15 59499100 59499100 T - LDHAL6B 5'UTR 0.19 TCGA-HU-A4GU-01 15 63569850 63569850 G A APH1B Missense_Mutation p.A10T 0.09 tolerated(0.85) benign(0.032) TCGA-HU-A4GU-01 15 65555539 65555539 G T PARP16 Silent p.A213A 0.30 TCGA-HU-A4GU-01 15 65623855 65623855 G A IGDCC3 Missense_Mutation p.R431W 0.11 deleterious(0) possibly_damaging(0.846) TCGA-HU-A4GU-01 15 65917329 65917329 C T SLC24A1 Missense_Mutation p.P304L 0.27 benign(0) TCGA-HU-A4GU-01 15 68506646 68506646 C T CLN6 Silent p.T93T 0.22 TCGA-HU-A4GU-01 15 68612623 68612623 G A ITGA11 Missense_Mutation p.A839V 0.33 tolerated(0.62) benign(0.021) TCGA-HU-A4GU-01 15 70959979 70959979 T - UACA Frame_Shift_Del p.K1015Sfs*19 0.11 TCGA-HU-A4GU-01 15 71185961 71185961 G A LRRC49 Silent p.S29S 0.42 TCGA-HU-A4GU-01 15 71535125 71535125 C A THSD4 Missense_Mutation p.S201Y 0.09 tolerated(0.65) benign(0.002) TCGA-HU-A4GU-01 15 72874426 72874426 C T ARIH1 Missense_Mutation p.A496V 0.29 deleterious(0.03) benign(0.157) TCGA-HU-A4GU-01 15 73617459 73617459 C T HCN4 Silent p.T605T 0.32 TCGA-HU-A4GU-01 15 74368307 74368307 G A GOLGA6A Missense_Mutation p.A195V 0.11 deleterious(0.02) possibly_damaging(0.885) TCGA-HU-A4GU-01 15 74623083 74623083 G A CCDC33 Silent p.E512E 0.10 TCGA-HU-A4GU-01 15 77451007 77451007 A - PEAK1 Frame_Shift_Del p.S1057Lfs*54 0.13 TCGA-HU-A4GU-01 15 80454663 80454663 C T FAH Missense_Mutation p.A147V 0.30 deleterious(0) probably_damaging(0.921) TCGA-HU-A4GU-01 15 80869226 80869226 C T ARNT2 Silent p.S511S 0.08 TCGA-HU-A4GU-01 15 86266404 86266404 C T AKAP13 Missense_Mutation p.R2204C 0.08 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GU-01 15 86790991 86790991 G A AGBL1 Missense_Mutation p.A160T 0.52 tolerated(0.39) benign(0.001) TCGA-HU-A4GU-01 15 90170255 90170255 C T TICRR Missense_Mutation p.R1891C 0.24 deleterious(0.03) probably_damaging(0.991) TCGA-HU-A4GU-01 15 90784507 90784507 C T GDPGP1 Nonsense_Mutation p.Q123* 0.23 TCGA-HU-A4GU-01 15 91333930 91333930 C T BLM Nonsense_Mutation p.R959* 0.28 TCGA-HU-A4GU-01 15 93482905 93482905 G A CHD2 Missense_Mutation p.A217T 0.19 tolerated(0.64) benign(0) TCGA-HU-A4GU-01 15 93492375 93492375 T - CHD2 Intron 0.31 TCGA-HU-A4GU-01 15 93547920 93547920 G A CHD2 Missense_Mutation p.S1451N 0.19 tolerated(0.35) possibly_damaging(0.679) TCGA-HU-A4GU-01 15 99500618 99500618 G - IGF1R Frame_Shift_Del p.G1352Afs*27 0.10 TCGA-HU-A4GU-01 16 11001305 11001305 C - CIITA Frame_Shift_Del p.A656Pfs*30 0.27 TCGA-HU-A4GU-01 16 11002909 11002909 C T CIITA Missense_Mutation p.A894V 0.27 tolerated(0.3) benign(0.004) TCGA-HU-A4GU-01 16 14016006 14016006 C T ERCC4 Missense_Mutation p.A109V 0.12 tolerated(1) benign(0.002) TCGA-HU-A4GU-01 16 14946375 14946375 G A NOMO1 Missense_Mutation p.R224Q 0.29 tolerated(0.42) benign(0.013) TCGA-HU-A4GU-01 16 16235070 16235070 G A ABCC1 Missense_Mutation p.A1510T 0.17 tolerated(0.29) benign(0.002) TCGA-HU-A4GU-01 16 16297376 16297376 G A ABCC6 Missense_Mutation p.R297C 0.22 deleterious(0.05) benign(0.276) TCGA-HU-A4GU-01 16 1841355 1841355 G A IGFALS Missense_Mutation p.A393V 0.33 tolerated(1) benign(0.006) TCGA-HU-A4GU-01 16 19639974 19639974 T A C16orf62 Missense_Mutation p.S556T 0.27 tolerated(0.38) benign(0.28) TCGA-HU-A4GU-01 16 21261925 21261925 G A ANKS4B Silent p.T346T 0.27 TCGA-HU-A4GU-01 16 2147444 2147444 C T PKD1 Silent p.P3427P 0.08 TCGA-HU-A4GU-01 16 2161489 2161489 C T PKD1 Missense_Mutation p.A1227T 0.20 benign(0.037) TCGA-HU-A4GU-01 16 21709120 21709120 C T OTOA Missense_Mutation p.A255V 0.19 deleterious(0) probably_damaging(0.937) TCGA-HU-A4GU-01 16 22122251 22122251 G A VWA3A Missense_Mutation p.V209I 0.20 tolerated(0.18) benign(0.071) TCGA-HU-A4GU-01 16 22339833 22339834 - C POLR3E Frame_Shift_Ins p.Q626Pfs*8 0.19 TCGA-HU-A4GU-01 16 2258808 2258808 T A MLST8 Missense_Mutation p.I304N 0.23 tolerated(0.14) benign(0.321) TCGA-HU-A4GU-01 16 2279661 2279661 G A E4F1 Missense_Mutation p.A134T 0.04 tolerated(0.49) benign(0.013) TCGA-HU-A4GU-01 16 2289963 2289963 C A ECI1 3'UTR 0.21 TCGA-HU-A4GU-01 16 25704428 25704428 G A HS3ST4 Silent p.P230P 0.19 TCGA-HU-A4GU-01 16 27840132 27840132 C T GSG1L Missense_Mutation p.A270T 0.28 tolerated(0.2) benign(0.045) TCGA-HU-A4GU-01 16 28167623 28167623 G A XPO6 Missense_Mutation p.A290V 0.22 tolerated(0.29) benign(0.002) TCGA-HU-A4GU-01 16 28993310 28993310 C T SPNS1 Missense_Mutation p.R300C 0.40 deleterious(0) probably_damaging(0.996) TCGA-HU-A4GU-01 16 29847055 29847055 C T MVP Missense_Mutation p.A203V 0.33 tolerated(0.06) possibly_damaging(0.516) TCGA-HU-A4GU-01 16 29998812 29998812 G T TAOK2 Missense_Mutation p.Q1073H 0.37 deleterious_low_confidence(0.02) probably_damaging(0.976) TCGA-HU-A4GU-01 16 30522245 30522245 G - ITGAL Frame_Shift_Del p.D890Tfs*9 0.26 TCGA-HU-A4GU-01 16 3063540 3063540 G C CLDN9 Silent p.T59T 0.19 TCGA-HU-A4GU-01 16 30960725 30960725 A G ORAI3 Missense_Mutation p.M39V 0.33 tolerated(0.62) benign(0.001) TCGA-HU-A4GU-01 16 31123326 31123326 G A BCKDK Missense_Mutation p.A358T 0.36 tolerated(0.67) benign(0.013) TCGA-HU-A4GU-01 16 31373986 31373986 C - ITGAX Frame_Shift_Del p.R426Afs*20 0.21 TCGA-HU-A4GU-01 16 3306393 3306393 G A MEFV Silent p.Y65Y 0.23 TCGA-HU-A4GU-01 16 3406837 3406837 C T OR2C1 Silent p.G299G 0.33 TCGA-HU-A4GU-01 16 3602259 3602259 C T NLRC3 Silent p.G810G 0.17 TCGA-HU-A4GU-01 16 3614879 3614879 C T NLRC3 Silent p.P100P 0.32 TCGA-HU-A4GU-01 16 3640612 3640612 G A SLX4 Silent p.G1009G 0.21 TCGA-HU-A4GU-01 16 3707190 3707190 C T DNASE1 Silent p.D184D 0.21 TCGA-HU-A4GU-01 16 3788617 3788617 C T CREBBP Missense_Mutation p.R1446H 0.21 unknown(0) TCGA-HU-A4GU-01 16 396908 396908 C T AXIN1 Missense_Mutation p.A40T 0.23 tolerated(0.38) benign(0.001) TCGA-HU-A4GU-01 16 4165068 4165068 C T ADCY9 Missense_Mutation p.A126T 0.18 deleterious(0.01) possibly_damaging(0.816) TCGA-HU-A4GU-01 16 47117434 47117434 G A NETO2 Missense_Mutation p.R426W 0.35 deleterious(0.03) benign(0.189) TCGA-HU-A4GU-01 16 50346071 50346071 C T ADCY7 Missense_Mutation p.A858V 0.24 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GU-01 16 50783604 50783604 A G CYLD 5'UTR 0.38 TCGA-HU-A4GU-01 16 5134879 5134880 AT - ALG1 Frame_Shift_Del p.*465T 0.18 TCGA-HU-A4GU-01 16 55513487 55513487 G A MMP2 Silent p.S32S 0.33 TCGA-HU-A4GU-01 16 55705876 55705876 G A SLC6A2 Missense_Mutation p.A145T 0.36 deleterious(0.01) possibly_damaging(0.884) TCGA-HU-A4GU-01 16 57207746 57207746 A G FAM192A Silent p.G7G 0.36 TCGA-HU-A4GU-01 16 57600566 57600566 G - GPR114 Frame_Shift_Del p.G203Afs*62 0.32 TCGA-HU-A4GU-01 16 57760043 57760043 G A CCDC135 Missense_Mutation p.V608M 0.30 tolerated(0.05) possibly_damaging(0.809) TCGA-HU-A4GU-01 16 599089 599089 C T CAPN15 Silent p.L516L 0.27 TCGA-HU-A4GU-01 16 613643 613643 G A C16orf11 Missense_Mutation p.V117M 0.50 tolerated(0.07) benign(0.07) TCGA-HU-A4GU-01 16 65016160 65016160 C G CDH11 Missense_Mutation p.E348D 0.35 tolerated(0.06) benign(0.325) TCGA-HU-A4GU-01 16 67574500 67574500 C T FAM65A Missense_Mutation p.R252C 0.42 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GU-01 16 68269866 68269866 C T ESRP2 Missense_Mutation p.G28E 0.88 tolerated(0.74) probably_damaging(0.998) TCGA-HU-A4GU-01 16 68405290 68405290 G A SMPD3 Silent p.G265G 0.60 TCGA-HU-A4GU-01 16 69373564 69373564 C T NIP7 5'UTR 0.28 TCGA-HU-A4GU-01 16 70602280 70602280 G A SF3B3 Missense_Mutation p.R1016H 0.07 tolerated(0.55) possibly_damaging(0.729) TCGA-HU-A4GU-01 16 70820182 70820182 T G VAC14 Missense_Mutation p.Q64P 0.34 tolerated(0.1) benign(0.007) TCGA-HU-A4GU-01 16 72120608 72120608 C - TXNL4B Frame_Shift_Del p.K127Sfs*38 0.32 TCGA-HU-A4GU-01 16 75563855 75563855 A - CHST5 Frame_Shift_Del p.F143Sfs*121 0.29 TCGA-HU-A4GU-01 16 77775744 77775744 A - NUDT7 Frame_Shift_Del p.K207Nfs*14 0.29 TCGA-HU-A4GU-01 16 789708 789708 T - NARFL Frame_Shift_Del p.R33Gfs*36 0.21 TCGA-HU-A4GU-01 16 82124512 82124512 G A HSD17B2 Missense_Mutation p.A224T 0.36 deleterious(0.04) benign(0.038) TCGA-HU-A4GU-01 16 84125426 84125426 C T MBTPS1 Missense_Mutation p.A292T 0.17 deleterious(0) probably_damaging(1) TCGA-HU-A4GU-01 16 87790005 87790005 T - KLHDC4 Frame_Shift_Del p.T91Lfs*36 0.34 TCGA-HU-A4GU-01 16 88945709 88945709 G A CBFA2T3 Missense_Mutation p.T544M 0.18 tolerated(0.06) possibly_damaging(0.836) TCGA-HU-A4GU-01 16 89349483 89349483 C A ANKRD11 Missense_Mutation p.R1156L 0.33 possibly_damaging(0.83) TCGA-HU-A4GU-01 16 89351149 89351149 G A ANKRD11 Nonsense_Mutation p.R601* 0.39 TCGA-HU-A4GU-01 16 89663042 89663042 C T CPNE7 3'UTR 0.50 TCGA-HU-A4GU-01 17 10543508 10543508 G T MYH3 Silent p.P829P 0.18 TCGA-HU-A4GU-01 17 15341239 15341239 C T CDRT4 Missense_Mutation p.A103T 0.56 tolerated(1) benign(0) TCGA-HU-A4GU-01 17 16326788 16326788 C A TRPV2 Missense_Mutation p.L211I 0.25 deleterious(0) possibly_damaging(0.905) TCGA-HU-A4GU-01 17 17696630 17696630 C - RAI1 Frame_Shift_Del p.P124Hfs*22 0.43 TCGA-HU-A4GU-01 17 20149379 20149379 G A SPECC1 Missense_Mutation p.R831H 0.52 tolerated(0.62) benign(0.002) TCGA-HU-A4GU-01 17 2290499 2290499 G A MNT Missense_Mutation p.A482V 0.64 deleterious(0.01) unknown(0) TCGA-HU-A4GU-01 17 263295 263295 G A C17orf97 Missense_Mutation p.A221T 0.44 tolerated_low_confidence(0.5) benign(0.003) TCGA-HU-A4GU-01 17 26604314 26604314 C T AC061975.8 5'Flank 0.24 TCGA-HU-A4GU-01 17 26691501 26691501 C T VTN 3'Flank 0.21 TCGA-HU-A4GU-01 17 26696033 26696033 C T VTN Missense_Mutation p.R229H 0.21 deleterious(0) probably_damaging(0.997) TCGA-HU-A4GU-01 17 27024691 27024691 C A SUPT6H Silent p.S1421S 0.28 TCGA-HU-A4GU-01 17 27614007 27614007 G C NUFIP2 Silent p.T335T 0.52 TCGA-HU-A4GU-01 17 27903134 27903134 C T GIT1 Missense_Mutation p.A552T 0.26 tolerated(0.26) benign(0.041) TCGA-HU-A4GU-01 17 27963291 27963291 A G SSH2 Missense_Mutation p.S626P 0.27 tolerated_low_confidence(0.07) probably_damaging(0.976) TCGA-HU-A4GU-01 17 28419105 28419105 C T EFCAB5 Missense_Mutation p.A1385V 0.22 deleterious(0.01) probably_damaging(0.921) TCGA-HU-A4GU-01 17 28706682 28706683 - C CPD Frame_Shift_Ins p.A231Rfs*38 0.38 TCGA-HU-A4GU-01 17 29654702 29654702 A G NF1 Silent p.E1818E 0.23 TCGA-HU-A4GU-01 17 31343004 31343004 G A ASIC2 Silent p.S525S 0.20 TCGA-HU-A4GU-01 17 31348260 31348260 G A ASIC2 Missense_Mutation p.A473V 0.21 deleterious(0) probably_damaging(0.997) TCGA-HU-A4GU-01 17 31618530 31618530 C A ASIC2 Nonsense_Mutation p.G202* 0.14 TCGA-HU-A4GU-01 17 3324785 3324785 C T OR3A3 Silent p.G308G 0.52 TCGA-HU-A4GU-01 17 33319550 33319550 G A LIG3 Missense_Mutation p.A432T 0.24 deleterious(0) probably_damaging(0.994) TCGA-HU-A4GU-01 17 34935676 34935676 C T GGNBP2 Nonsense_Mutation p.R283* 0.20 TCGA-HU-A4GU-01 17 35992179 35992179 C T DDX52 Silent p.T189T 0.23 TCGA-HU-A4GU-01 17 36551660 36551660 G A SOCS7 Missense_Mutation p.V530I 0.31 tolerated(0.1) benign(0.275) TCGA-HU-A4GU-01 17 36708278 36708278 G A SRCIN1 Silent p.S857S 0.17 TCGA-HU-A4GU-01 17 37351142 37351142 G A CACNB1 Missense_Mutation p.R56C 0.16 deleterious(0) probably_damaging(0.995) TCGA-HU-A4GU-01 17 37826571 37826571 G A PNMT Missense_Mutation p.A260T 0.36 tolerated(0.51) benign(0.002) TCGA-HU-A4GU-01 17 38024549 38024549 G T ZPBP2 5'UTR 0.17 TCGA-HU-A4GU-01 17 38078712 38078712 G A ORMDL3 3'UTR 0.26 TCGA-HU-A4GU-01 17 38252038 38252038 C T NR1D1 Missense_Mutation p.A303T 0.24 tolerated(0.52) benign(0.126) TCGA-HU-A4GU-01 17 38711227 38711227 T C CCR7 Missense_Mutation p.K302E 0.30 tolerated(0.13) probably_damaging(0.973) TCGA-HU-A4GU-01 17 38859491 38859491 G A KRT24 Missense_Mutation p.A152V 0.29 deleterious(0) probably_damaging(1) TCGA-HU-A4GU-01 17 38859836 38859836 C - KRT24 Frame_Shift_Del p.G37Afs*16 0.19 TCGA-HU-A4GU-01 17 38904496 38904496 C T KRT25 3'UTR 0.27 TCGA-HU-A4GU-01 17 38938374 38938374 T C KRT27 Silent p.G124G 0.30 TCGA-HU-A4GU-01 17 38953476 38953476 C T KRT28 Missense_Mutation p.A250T 0.28 tolerated(0.07) benign(0.323) TCGA-HU-A4GU-01 17 39923794 39923794 G A JUP Missense_Mutation p.T249M 0.23 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GU-01 17 40001675 40001675 C - KLHL10 Frame_Shift_Del p.R329Vfs*9 0.32 TCGA-HU-A4GU-01 17 40010749 40010749 C T KLHL11 Missense_Mutation p.S457N 0.28 tolerated(0.09) possibly_damaging(0.582) TCGA-HU-A4GU-01 17 40094982 40094982 T C TTC25 RNA 0.25 TCGA-HU-A4GU-01 17 40120221 40120221 C A CNP Missense_Mutation p.L47I 0.34 deleterious(0.01) benign(0.005) TCGA-HU-A4GU-01 17 40255695 40255695 G T DHX58 Missense_Mutation p.A562D 0.23 tolerated(0.18) possibly_damaging(0.864) TCGA-HU-A4GU-01 17 40369449 40369449 G A STAT5B Silent p.C401C 0.28 TCGA-HU-A4GU-01 17 40845347 40845347 G T CNTNAP1 Missense_Mutation p.G929C 0.05 deleterious(0) probably_damaging(1) TCGA-HU-A4GU-01 17 41002339 41002339 C - AOC2 Frame_Shift_Del p.P750Lfs*58 0.19 TCGA-HU-A4GU-01 17 41611239 41611239 C T ETV4 Missense_Mutation p.C124Y 0.19 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GU-01 17 42030224 42030224 G A PYY 3'UTR 0.30 TCGA-HU-A4GU-01 17 42461008 42461008 C A ITGA2B Nonsense_Mutation p.E355* 0.69 TCGA-HU-A4GU-01 17 43190500 43190500 C T PLCD3 Silent p.V706V 0.29 TCGA-HU-A4GU-01 17 43907506 43907506 G A CRHR1 Missense_Mutation p.A190T 0.26 tolerated(1) benign(0.03) TCGA-HU-A4GU-01 17 43907524 43907524 G A CRHR1 Missense_Mutation p.A196T 0.33 tolerated(0.26) benign(0.064) TCGA-HU-A4GU-01 17 47656169 47656170 - C NXPH3 Frame_Shift_Ins p.P92Tfs*62 0.16 TCGA-HU-A4GU-01 17 48068905 48068905 C T DLX3 Silent p.P280P 0.22 TCGA-HU-A4GU-01 17 48069204 48069204 G A DLX3 Missense_Mutation p.R181C 0.18 deleterious(0) probably_damaging(0.965) TCGA-HU-A4GU-01 17 48148760 48148760 C T ITGA3 Silent p.G279G 0.14 TCGA-HU-A4GU-01 17 48218655 48218655 C A PPP1R9B Missense_Mutation p.R568L 0.29 deleterious(0) probably_damaging(0.952) TCGA-HU-A4GU-01 17 48268238 48268238 G A COL1A1 Silent p.G761G 0.07 TCGA-HU-A4GU-01 17 48447421 48447421 C T MRPL27 Missense_Mutation p.R71H 0.20 tolerated(0.07) benign(0.015) TCGA-HU-A4GU-01 17 5322707 5322707 G A NUP88 Silent p.G88G 0.07 TCGA-HU-A4GU-01 17 54912364 54912364 C A DGKE Missense_Mutation p.Q70K 0.20 tolerated(1) benign(0.006) TCGA-HU-A4GU-01 17 57290958 57290958 C A SMG8 Missense_Mutation p.P925H 0.22 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GU-01 17 58233957 58233957 G A CA4 Missense_Mutation p.R50H 0.18 tolerated(0.49) benign(0.016) TCGA-HU-A4GU-01 17 58299799 58299799 A G USP32 Missense_Mutation p.Y574H 0.03 deleterious(0) probably_damaging(0.996) TCGA-HU-A4GU-01 17 59560345 59560345 C - TBX4 Frame_Shift_Del p.P371Lfs*8 0.24 TCGA-HU-A4GU-01 17 61895287 61895287 C A DDX42 Silent p.A782A 0.34 TCGA-HU-A4GU-01 17 62049733 62049733 G A SCN4A Missense_Mutation p.A124V 0.30 deleterious(0.04) possibly_damaging(0.619) TCGA-HU-A4GU-01 17 62291475 62291475 C T TEX2 Missense_Mutation p.A35T 0.19 tolerated_low_confidence(1) benign(0.062) TCGA-HU-A4GU-01 17 62750142 62750142 G A hsa-mir-6080 RNA 0.23 TCGA-HU-A4GU-01 17 63534284 63534284 G A AXIN2 Intron 0.53 TCGA-HU-A4GU-01 17 6358773 6358773 G T PITPNM3 Missense_Mutation p.A937D 0.73 tolerated(0.1) benign(0.001) TCGA-HU-A4GU-01 17 63685297 63685297 G A CEP112 Nonsense_Mutation p.R883* 0.18 TCGA-HU-A4GU-01 17 6371655 6371655 G A PITPNM3 Missense_Mutation p.R594C 0.10 deleterious(0) probably_damaging(0.954) TCGA-HU-A4GU-01 17 64049870 64049870 G A CEP112 Missense_Mutation p.A401V 0.21 tolerated(0.09) benign(0.059) TCGA-HU-A4GU-01 17 64770155 64770155 C T PRKCA Silent p.G525G 0.33 TCGA-HU-A4GU-01 17 64873620 64873620 G A CACNG5 Missense_Mutation p.G57D 0.24 deleterious(0) probably_damaging(1) TCGA-HU-A4GU-01 17 64875104 64875104 C T CACNG5 Missense_Mutation p.R71C 0.27 tolerated(0.09) possibly_damaging(0.883) TCGA-HU-A4GU-01 17 65928070 65928070 G C BPTF Missense_Mutation p.R2065T 0.25 probably_damaging(0.918) TCGA-HU-A4GU-01 17 66391272 66391272 C T ARSG Missense_Mutation p.R384W 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-HU-A4GU-01 17 67256528 67256528 T - ABCA5 Frame_Shift_Del p.N1197Mfs*13 0.21 TCGA-HU-A4GU-01 17 72356145 72356145 G T BTBD17 Missense_Mutation p.P109T 0.07 tolerated(0.4) benign(0.023) TCGA-HU-A4GU-01 17 72521981 72521981 C A CD300LB Missense_Mutation p.E129D 0.26 deleterious(0.02) benign(0.024) TCGA-HU-A4GU-01 17 73274291 73274291 G A SLC25A19 Silent p.C195C 0.26 TCGA-HU-A4GU-01 17 73491063 73491063 C - KIAA0195 Frame_Shift_Del p.S895Pfs*13 0.22 TCGA-HU-A4GU-01 17 7369233 7369233 G - ZBTB4 Frame_Shift_Del p.E297Sfs*4 0.40 TCGA-HU-A4GU-01 17 73727940 73727940 G A ITGB4 Silent p.T421T 0.19 TCGA-HU-A4GU-01 17 74013833 74013833 A G EVPL Missense_Mutation p.I566T 0.24 deleterious(0.03) benign(0.01) TCGA-HU-A4GU-01 17 74060139 74060139 C T SRP68 Missense_Mutation p.R160H 0.25 deleterious(0) probably_damaging(0.993) TCGA-HU-A4GU-01 17 74077461 74077461 T C ZACN Missense_Mutation p.L216P 0.05 tolerated(0.11) possibly_damaging(0.844) TCGA-HU-A4GU-01 17 74394386 74394386 C T UBE2O Missense_Mutation p.V659I 0.06 deleterious(0) probably_damaging(0.972) TCGA-HU-A4GU-01 17 74721697 74721697 T C JMJD6 Missense_Mutation p.T124A 0.11 tolerated(0.17) benign(0.013) TCGA-HU-A4GU-01 17 74928844 74928844 C T MGAT5B Missense_Mutation p.A481V 0.25 tolerated(0.33) possibly_damaging(0.84) TCGA-HU-A4GU-01 17 74936520 74936520 G A MGAT5B Missense_Mutation p.A550T 0.23 deleterious(0) probably_damaging(0.927) TCGA-HU-A4GU-01 17 7578275 7578277 GAG - TP53 In_Frame_Del p.P191del 0.35 TCGA-HU-A4GU-01 17 76490824 76490824 G A DNAH17 Missense_Mutation p.R2027W 0.12 possibly_damaging(0.884) TCGA-HU-A4GU-01 17 76491055 76491055 G T DNAH17 Missense_Mutation p.L1996M 0.34 probably_damaging(0.97) TCGA-HU-A4GU-01 17 77079993 77079993 C T ENGASE Missense_Mutation p.R468W 0.26 deleterious(0) possibly_damaging(0.677) TCGA-HU-A4GU-01 17 77708929 77708929 G A ENPP7 Missense_Mutation p.A163T 0.21 tolerated(0.57) benign(0.028) TCGA-HU-A4GU-01 17 78169019 78169019 G A CARD14 Silent p.T462T 0.34 TCGA-HU-A4GU-01 17 78169064 78169064 G A CARD14 Silent p.A477A 0.27 TCGA-HU-A4GU-01 17 78313946 78313946 G A RNF213 Missense_Mutation p.V1927I 0.23 probably_damaging(0.99) TCGA-HU-A4GU-01 17 79108231 79108231 G T AATK Silent p.L42L 0.28 TCGA-HU-A4GU-01 17 79991327 79991327 G T RAC3 Missense_Mutation p.E100D 0.27 deleterious_low_confidence(0.02) benign(0.261) TCGA-HU-A4GU-01 17 80426665 80426665 T C NARF Missense_Mutation p.V93A 0.15 deleterious(0.03) possibly_damaging(0.51) TCGA-HU-A4GU-01 17 8638559 8638559 G A CCDC42 Missense_Mutation p.A243V 0.69 deleterious(0.01) probably_damaging(0.991) TCGA-HU-A4GU-01 18 13049657 13049657 G A CEP192 Missense_Mutation p.R956H 0.53 tolerated(0.41) benign(0.001) TCGA-HU-A4GU-01 18 14534979 14534979 C T POTEC Missense_Mutation p.V280I 0.20 tolerated(0.52) probably_damaging(0.939) TCGA-HU-A4GU-01 18 196733 196733 C T USP14 Missense_Mutation p.A187V 0.22 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GU-01 18 21119843 21119843 G A NPC1 Silent p.C909C 0.36 TCGA-HU-A4GU-01 18 21441734 21441734 C T LAMA3 Missense_Mutation p.A1516V 0.33 benign(0.008) TCGA-HU-A4GU-01 18 22805650 22805650 C A ZNF521 Missense_Mutation p.K744N 0.37 deleterious(0) probably_damaging(0.994) TCGA-HU-A4GU-01 18 22807108 22807108 C T ZNF521 Silent p.P258P 0.26 TCGA-HU-A4GU-01 18 28728576 28728576 G T DSC1 Silent p.G219G 0.31 TCGA-HU-A4GU-01 18 28742587 28742587 G T DSC1 5'UTR 0.43 TCGA-HU-A4GU-01 18 29038476 29038476 G A DSG3 Silent p.P95P 0.40 TCGA-HU-A4GU-01 18 29121196 29121196 C T DSG2 Silent p.G640G 0.37 TCGA-HU-A4GU-01 18 31323069 31323069 C T ASXL3 Missense_Mutation p.A1086V 0.27 probably_damaging(0.958) TCGA-HU-A4GU-01 18 33077862 33077862 C - INO80C 5'UTR 0.32 TCGA-HU-A4GU-01 18 33694188 33694188 T - SLC39A6 Frame_Shift_Del p.N572Tfs*16 0.28 TCGA-HU-A4GU-01 18 33779654 33779654 C T MOCOS Missense_Mutation p.A103V 0.37 tolerated(0.25) benign(0.035) TCGA-HU-A4GU-01 18 34310607 34310607 A C FHOD3 Splice_Site p.X965_splice 0.31 TCGA-HU-A4GU-01 18 42281510 42281510 C T SETBP1 Missense_Mutation p.R67W 0.31 deleterious(0) possibly_damaging(0.781) TCGA-HU-A4GU-01 18 44560944 44560944 C T TCEB3B Missense_Mutation p.R231H 0.31 tolerated(1) benign(0.004) TCGA-HU-A4GU-01 18 52585165 52585165 C A CCDC68 Missense_Mutation p.K284N 0.25 deleterious(0) possibly_damaging(0.783) TCGA-HU-A4GU-01 18 52896180 52896180 G A TCF4 Missense_Mutation p.R695C 0.36 deleterious(0) probably_damaging(1) TCGA-HU-A4GU-01 18 55103500 55103500 C G ONECUT2 Missense_Mutation p.H184Q 0.29 tolerated_low_confidence(0.12) possibly_damaging(0.795) TCGA-HU-A4GU-01 18 55222129 55222129 A C FECH Missense_Mutation p.V293G 0.29 deleterious(0) probably_damaging(1) TCGA-HU-A4GU-01 18 55238753 55238753 C T FECH Missense_Mutation p.A118T 0.24 deleterious(0.02) probably_damaging(1) TCGA-HU-A4GU-01 18 59949640 59949640 A T KIAA1468 Missense_Mutation p.R1072S 0.44 tolerated(0.15) benign(0.383) TCGA-HU-A4GU-01 18 60985894 60985894 C T BCL2 Silent p.A2A 0.07 TCGA-HU-A4GU-01 18 61562569 61562569 G A SERPINB2 Silent p.G80G 0.12 TCGA-HU-A4GU-01 18 65178347 65178347 A - DSEL Frame_Shift_Del p.Y1177Tfs*27 0.24 TCGA-HU-A4GU-01 18 72345280 72345280 T G ZNF407 Missense_Mutation p.L769V 0.09 deleterious(0.01) probably_damaging(0.996) TCGA-HU-A4GU-01 18 74091004 74091004 G A ZNF516 Silent p.G1022G 0.19 TCGA-HU-A4GU-01 18 74617320 74617320 A - ZNF236 Frame_Shift_Del p.T749Hfs*6 0.20 TCGA-HU-A4GU-01 18 74632003 74632003 C T ZNF236 Silent p.S1180S 0.25 TCGA-HU-A4GU-01 18 74680287 74680287 G A ZNF236 Missense_Mutation p.V1844I 0.35 tolerated_low_confidence(0.15) benign(0) TCGA-HU-A4GU-01 18 74962929 74962929 G A GALR1 Missense_Mutation p.R142H 0.17 tolerated(0.46) benign(0.192) TCGA-HU-A4GU-01 18 76752132 76752132 C T SALL3 Silent p.G47G 0.15 TCGA-HU-A4GU-01 18 77089290 77089290 C T ATP9B Silent p.G641G 0.13 TCGA-HU-A4GU-01 19 10791720 10791720 G A ILF3 Missense_Mutation p.G328D 0.30 deleterious(0) probably_damaging(0.995) TCGA-HU-A4GU-01 19 11417320 11417320 G A TSPAN16 Missense_Mutation p.G164D 0.28 tolerated(0.08) possibly_damaging(0.765) TCGA-HU-A4GU-01 19 11541544 11541544 G T CCDC151 Missense_Mutation p.P140Q 0.36 deleterious(0.01) benign(0.373) TCGA-HU-A4GU-01 19 12155668 12155668 G T ZNF878 Missense_Mutation p.P183H 0.27 tolerated(0.66) benign(0.2) TCGA-HU-A4GU-01 19 12830079 12830079 T C TNPO2 Silent p.S57S 0.32 TCGA-HU-A4GU-01 19 12867058 12867058 C A BEST2 Missense_Mutation p.T351N 0.15 deleterious(0) possibly_damaging(0.852) TCGA-HU-A4GU-01 19 13059913 13059913 G A RAD23A Missense_Mutation p.E207K 0.17 tolerated(0.36) benign(0.056) TCGA-HU-A4GU-01 19 13879814 13879814 C T MRI1 Missense_Mutation p.P301S 0.36 tolerated(0.32) benign(0.096) TCGA-HU-A4GU-01 19 14070014 14070014 G A DCAF15 Silent p.S314S 0.40 TCGA-HU-A4GU-01 19 15198348 15198348 A G OR1I1 Missense_Mutation p.I158V 0.07 tolerated(0.28) benign(0.012) TCGA-HU-A4GU-01 19 15227320 15227320 G T ILVBL Silent p.S400S 0.27 TCGA-HU-A4GU-01 19 15273352 15273352 G A NOTCH3 Missense_Mutation p.A1946V 0.41 deleterious(0) probably_damaging(0.914) TCGA-HU-A4GU-01 19 15289970 15289970 G - NOTCH3 Frame_Shift_Del p.P1195Qfs*77 0.35 TCGA-HU-A4GU-01 19 15471735 15471735 C T AKAP8 Missense_Mutation p.C484Y 0.43 deleterious(0) probably_damaging(0.995) TCGA-HU-A4GU-01 19 1555279 1555279 A - MEX3D 3'UTR 0.33 TCGA-HU-A4GU-01 19 16319879 16319879 C - AP1M1 Frame_Shift_Del p.P147Rfs*102 0.20 TCGA-HU-A4GU-01 19 16664448 16664448 C T SLC35E1 3'UTR 0.34 TCGA-HU-A4GU-01 19 16770960 16770960 G A SMIM7 5'UTR 0.24 TCGA-HU-A4GU-01 19 17039884 17039884 C - CPAMD8 Frame_Shift_Del p.H1052Ifs*127 0.35 TCGA-HU-A4GU-01 19 17330465 17330465 C T USE1 Missense_Mutation p.A208V 0.38 deleterious(0) probably_damaging(0.982) TCGA-HU-A4GU-01 19 18391865 18391865 G T JUND Missense_Mutation p.L144M 0.57 deleterious(0.01) probably_damaging(0.989) TCGA-HU-A4GU-01 19 18545083 18545083 C T SSBP4 3'UTR 0.28 TCGA-HU-A4GU-01 19 18727908 18727908 C T TMEM59L Silent p.H220H 0.18 TCGA-HU-A4GU-01 19 19653320 19653320 C T CILP2 Silent p.H243H 0.29 TCGA-HU-A4GU-01 19 19672809 19672809 G A PBX4 3'UTR 0.36 TCGA-HU-A4GU-01 19 19746286 19746286 G A GMIP Missense_Mutation p.R500W 0.37 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GU-01 19 21991483 21991483 T G ZNF43 Missense_Mutation p.K452N 0.24 deleterious(0.01) probably_damaging(0.998) TCGA-HU-A4GU-01 19 23299911 23299911 C T ZNF730 5'UTR 0.49 TCGA-HU-A4GU-01 19 23836033 23836033 C T ZNF675 Missense_Mutation p.V568M 0.12 deleterious_low_confidence(0.01) benign(0.046) TCGA-HU-A4GU-01 19 2431862 2431862 G - LMNB2 Frame_Shift_Del p.S544Rfs*31 0.24 TCGA-HU-A4GU-01 19 30935034 30935034 C T ZNF536 Missense_Mutation p.R189C 0.31 deleterious(0) probably_damaging(0.997) TCGA-HU-A4GU-01 19 3157794 3157794 C A GNA15 Silent p.S271S 0.27 TCGA-HU-A4GU-01 19 3273874 3273874 C T CELF5 Missense_Mutation p.A116V 0.37 tolerated(0.08) benign(0.032) TCGA-HU-A4GU-01 19 33202775 33202775 G A NUDT19 Missense_Mutation p.R347H 0.27 tolerated(0.45) benign(0.014) TCGA-HU-A4GU-01 19 33355008 33355008 C T SLC7A9 Missense_Mutation p.A158T 0.33 tolerated(0.08) benign(0.109) TCGA-HU-A4GU-01 19 35741297 35741297 T C LSR Silent p.C111C 0.32 TCGA-HU-A4GU-01 19 3600069 3600069 G A TBXA2R Silent p.G188G 0.14 TCGA-HU-A4GU-01 19 36050835 36050835 C T ATP4A Missense_Mutation p.A310T 0.29 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GU-01 19 36051332 36051332 G T ATP4A Silent p.P240P 0.36 TCGA-HU-A4GU-01 19 36340027 36340027 G A NPHS1 Missense_Mutation p.A288V 0.46 tolerated(0.17) benign(0.009) TCGA-HU-A4GU-01 19 36508818 36508818 T C CLIP3 Missense_Mutation p.D420G 0.26 deleterious(0) possibly_damaging(0.61) TCGA-HU-A4GU-01 19 36530914 36530914 G A THAP8 Missense_Mutation p.R70C 0.28 deleterious(0.02) probably_damaging(0.992) TCGA-HU-A4GU-01 19 36595895 36595895 G T WDR62 Missense_Mutation p.V1513L 0.58 tolerated_low_confidence(0.28) probably_damaging(0.997) TCGA-HU-A4GU-01 19 3779046 3779046 G A MATK Silent p.L382L 0.31 TCGA-HU-A4GU-01 19 37975340 37975340 A C ZNF570 Missense_Mutation p.K272N 0.44 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GU-01 19 38876629 38876629 C T GGN Missense_Mutation p.E425K 0.50 tolerated_low_confidence(0.09) unknown(0) TCGA-HU-A4GU-01 19 39262575 39262575 C T LGALS7 Missense_Mutation p.S64N 0.09 deleterious(0.04) benign(0.109) TCGA-HU-A4GU-01 19 39667317 39667317 G A PAK4 Missense_Mutation p.A483T 0.42 deleterious(0) probably_damaging(0.985) TCGA-HU-A4GU-01 19 3982369 3982369 G T EEF2 Silent p.A222A 0.40 TCGA-HU-A4GU-01 19 39957172 39957172 G A SUPT5H Missense_Mutation p.R310H 0.30 deleterious(0) probably_damaging(1) TCGA-HU-A4GU-01 19 40320934 40320934 G A DYRK1B Intron 0.35 TCGA-HU-A4GU-01 19 41075621 41075621 C A SPTBN4 Missense_Mutation p.L2339M 0.33 tolerated(0.15) probably_damaging(0.91) TCGA-HU-A4GU-01 19 41188661 41188661 C A NUMBL Missense_Mutation p.G124V 0.29 deleterious(0.02) probably_damaging(0.912) TCGA-HU-A4GU-01 19 41271032 41271032 C T SNRPA Missense_Mutation p.T270M 0.34 deleterious(0) probably_damaging(0.996) TCGA-HU-A4GU-01 19 42473622 42473622 C T ATP1A3 Missense_Mutation p.V898I 0.33 tolerated(0.71) benign(0.003) TCGA-HU-A4GU-01 19 42599543 42599544 - CGGATCA POU2F2 Frame_Shift_Ins p.V343Dfs*161 0.44 TCGA-HU-A4GU-01 19 42793486 42793486 G A CIC Missense_Mutation p.A430T 0.18 benign(0.004) TCGA-HU-A4GU-01 19 42830410 42830410 G T MEGF8 Missense_Mutation p.K5N 0.32 tolerated_low_confidence(0.5) unknown(0) TCGA-HU-A4GU-01 19 43099049 43099049 C A CEACAM8 5'UTR 0.30 TCGA-HU-A4GU-01 19 43243121 43243121 A G PSG3 Missense_Mutation p.L62P 0.36 tolerated(0.09) benign(0.112) TCGA-HU-A4GU-01 19 43243165 43243165 C A PSG3 Missense_Mutation p.K47N 0.26 deleterious(0) benign(0.207) TCGA-HU-A4GU-01 19 4422704 4422704 C T CHAF1A Missense_Mutation p.R387W 0.42 deleterious(0) unknown(0) TCGA-HU-A4GU-01 19 4510469 4510469 G A PLIN4 Missense_Mutation p.A1154V 0.32 tolerated(0.11) benign(0.166) TCGA-HU-A4GU-01 19 45262879 45262880 - G BCL3 3'UTR 0.27 TCGA-HU-A4GU-01 19 4550834 4550834 C T SEMA6B Silent p.P366P 0.70 TCGA-HU-A4GU-01 19 45515423 45515423 G A RELB Silent p.E131E 0.39 TCGA-HU-A4GU-01 19 45805817 45805817 C T MARK4 Missense_Mutation p.A703V 0.69 tolerated(0.06) benign(0.001) TCGA-HU-A4GU-01 19 46206208 46206208 G A QPCTL Nonsense_Mutation p.W350* 0.41 TCGA-HU-A4GU-01 19 46825200 46825200 C T HIF3A Missense_Mutation p.R438W 0.31 deleterious(0.03) benign(0.004) TCGA-HU-A4GU-01 19 47933560 47933560 C T SLC8A2 Missense_Mutation p.R851H 0.20 tolerated(0.05) possibly_damaging(0.714) TCGA-HU-A4GU-01 19 49113248 49113248 C T FAM83E Missense_Mutation p.V215I 0.29 tolerated(0.64) benign(0.006) TCGA-HU-A4GU-01 19 49303509 49303509 G A BCAT2 Missense_Mutation p.R116C 0.40 deleterious(0) probably_damaging(0.995) TCGA-HU-A4GU-01 19 49651343 49651343 C T PPFIA3 Silent p.L947L 0.33 TCGA-HU-A4GU-01 19 49657832 49657832 A G HRC Silent p.S221S 0.39 TCGA-HU-A4GU-01 19 49973636 49973636 C T ALDH16A1 Missense_Mutation p.A774V 0.41 tolerated(0.07) probably_damaging(0.967) TCGA-HU-A4GU-01 19 50086849 50086849 C T PRRG2 Missense_Mutation p.R46W 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-HU-A4GU-01 19 50209247 50209247 G A CPT1C Missense_Mutation p.R349Q 0.32 tolerated(0.5) benign(0.002) TCGA-HU-A4GU-01 19 50971041 50971041 G A FAM71E1 Silent p.S179S 0.81 TCGA-HU-A4GU-01 19 51170839 51170839 G A SHANK1 Silent p.L1460L 0.40 TCGA-HU-A4GU-01 19 51411835 51411835 C T KLK4 Missense_Mutation p.G159S 0.80 tolerated(0.33) probably_damaging(0.999) TCGA-HU-A4GU-01 19 51957485 51957485 G T SIGLEC8 Silent p.G411G 0.34 TCGA-HU-A4GU-01 19 5214614 5214614 C T PTPRS Silent p.S1484S 0.25 TCGA-HU-A4GU-01 19 5218520 5218520 C T PTPRS Missense_Mutation p.R1320H 0.35 tolerated(0.1) probably_damaging(0.953) TCGA-HU-A4GU-01 19 52663747 52663747 A G ZNF836 Missense_Mutation p.L38S 0.24 deleterious(0) probably_damaging(0.992) TCGA-HU-A4GU-01 19 53644716 53644716 C A ZNF347 Missense_Mutation p.K456N 0.36 deleterious(0.02) probably_damaging(0.93) TCGA-HU-A4GU-01 19 54660654 54660654 G - LENG1 Frame_Shift_Del p.P141Rfs*127 0.28 TCGA-HU-A4GU-01 19 54967828 54967828 C A LENG8 Missense_Mutation p.P487T 0.38 tolerated(0.42) benign(0.068) TCGA-HU-A4GU-01 19 55399671 55399671 G A FCAR Intron 0.32 TCGA-HU-A4GU-01 19 55556513 55556513 G T RDH13 Missense_Mutation p.L309I 0.44 deleterious(0) probably_damaging(0.997) TCGA-HU-A4GU-01 19 55777295 55777295 C A HSPBP1 Missense_Mutation p.E284D 0.31 tolerated(0.51) benign(0.003) TCGA-HU-A4GU-01 19 56565026 56565026 G A NLRP5 Missense_Mutation p.A1051T 0.21 tolerated(0.06) possibly_damaging(0.77) TCGA-HU-A4GU-01 19 5668381 5668381 T - SAFB 3'Flank 0.31 TCGA-HU-A4GU-01 19 58050284 58050284 G C ZNF549 Missense_Mutation p.E638Q 0.36 deleterious(0.03) benign(0.321) TCGA-HU-A4GU-01 19 58385325 58385325 C A ZNF814 Missense_Mutation p.S478I 0.24 tolerated(0.44) benign(0.008) TCGA-HU-A4GU-01 19 58571461 58571461 G A ZNF135 Intron 0.33 TCGA-HU-A4GU-01 19 59027824 59027824 C A ZBTB45 Missense_Mutation p.S406I 0.33 deleterious(0.01) benign(0.285) TCGA-HU-A4GU-01 19 6374319 6374319 C T ALKBH7 Missense_Mutation p.L104F 0.38 deleterious(0.01) probably_damaging(0.989) TCGA-HU-A4GU-01 19 6743586 6743586 G A TRIP10 Missense_Mutation p.A164T 0.20 tolerated(0.08) benign(0.425) TCGA-HU-A4GU-01 19 7170599 7170599 G A INSR Missense_Mutation p.R478C 0.38 deleterious(0) probably_damaging(0.988) TCGA-HU-A4GU-01 19 7584476 7584476 C T ZNF358 Silent p.G116G 0.43 TCGA-HU-A4GU-01 19 7830088 7830088 G A CLEC4M Missense_Mutation p.A50T 0.30 tolerated(0.11) benign(0.036) TCGA-HU-A4GU-01 19 7987519 7987519 C - SNAPC2 Frame_Shift_Del p.P294Qfs*11 0.27 TCGA-HU-A4GU-01 19 8464780 8464780 G A RAB11B Missense_Mutation p.S25N 0.23 deleterious_low_confidence(0) probably_damaging(0.94) TCGA-HU-A4GU-01 19 8464795 8464795 G A RAB11B Missense_Mutation p.R30H 0.26 deleterious_low_confidence(0.02) probably_damaging(0.98) TCGA-HU-A4GU-01 19 8531211 8531211 A G HNRNPM Silent p.G241G 0.38 TCGA-HU-A4GU-01 19 8563987 8563987 G A PRAM1 Silent p.G235G 0.36 TCGA-HU-A4GU-01 19 9047057 9047057 G T MUC16 Missense_Mutation p.P11525H 0.41 benign(0.039) TCGA-HU-A4GU-01 19 9057555 9057555 C A MUC16 Missense_Mutation p.G9964V 0.70 unknown(0) TCGA-HU-A4GU-01 19 9077612 9077612 C A MUC16 Missense_Mutation p.L3278F 0.29 unknown(0) TCGA-HU-A4GU-01 19 9271917 9271917 C T ZNF317 Silent p.C532C 0.26 TCGA-HU-A4GU-01 19 9406577 9406577 C A ZNF699 Missense_Mutation p.K501N 0.30 deleterious(0) possibly_damaging(0.767) TCGA-HU-A4GU-01 1 100154805 100154805 G A PALMD Missense_Mutation p.R330Q 0.47 tolerated(0.53) possibly_damaging(0.883) TCGA-HU-A4GU-01 1 100347173 100347173 C A AGL Missense_Mutation p.A745D 0.26 deleterious(0.01) benign(0.048) TCGA-HU-A4GU-01 1 100378009 100378009 C T AGL Silent p.R1295R 0.26 TCGA-HU-A4GU-01 1 100387188 100387188 A G AGL Missense_Mutation p.E1527G 0.24 deleterious(0) probably_damaging(0.997) TCGA-HU-A4GU-01 1 100661908 100661908 T C DBT Missense_Mutation p.D451G 0.31 deleterious(0) probably_damaging(1) TCGA-HU-A4GU-01 1 100684199 100684199 G A DBT Silent p.L180L 0.21 TCGA-HU-A4GU-01 1 101200253 101200253 C T VCAM1 Missense_Mutation p.A663V 0.18 deleterious(0.01) probably_damaging(1) TCGA-HU-A4GU-01 1 103540264 103540264 C T COL11A1 Silent p.T187T 0.19 TCGA-HU-A4GU-01 1 103573670 103573670 A GG COL11A1 Frame_Shift_Ins p.L22Pfs*10 0.27 TCGA-HU-A4GU-01 1 104093657 104093657 G T RNPC3 Missense_Mutation p.A486S 0.30 deleterious(0.01) possibly_damaging(0.521) TCGA-HU-A4GU-01 1 104114744 104114744 A T AMY2B Missense_Mutation p.N61Y 0.33 deleterious(0.01) possibly_damaging(0.892) TCGA-HU-A4GU-01 1 109643110 109643110 C T TMEM167B 3'Flank 0.23 TCGA-HU-A4GU-01 1 109814954 109814954 G A CELSR2 Missense_Mutation p.D2661N 0.30 tolerated(0.1) benign(0.334) TCGA-HU-A4GU-01 1 110884271 110884271 C A RBM15 Silent p.R748R 0.35 TCGA-HU-A4GU-01 1 11175526 11175526 C A MTOR Splice_Site p.X2339_splice 0.23 TCGA-HU-A4GU-01 1 1117760 1117760 T - TTLL10 Frame_Shift_Del p.F285Sfs*107 0.27 TCGA-HU-A4GU-01 1 111854874 111854874 C T CHIA Missense_Mutation p.R40C 0.19 deleterious(0.03) possibly_damaging(0.778) TCGA-HU-A4GU-01 1 112321089 112321089 G T KCND3 Missense_Mutation p.P496H 0.24 tolerated_low_confidence(0.11) benign(0) TCGA-HU-A4GU-01 1 114512812 114512812 G T HIPK1 Missense_Mutation p.Q1002H 0.32 tolerated(0.3) possibly_damaging(0.719) TCGA-HU-A4GU-01 1 114515787 114515787 C A HIPK1 Missense_Mutation p.P1096T 0.22 tolerated(0.08) benign(0.219) TCGA-HU-A4GU-01 1 120438692 120438692 C T ADAM30 Missense_Mutation p.V90I 0.21 tolerated(0.05) possibly_damaging(0.737) TCGA-HU-A4GU-01 1 120458008 120458008 C A NOTCH2 Missense_Mutation p.G2446V 0.17 tolerated(0.29) probably_damaging(0.997) TCGA-HU-A4GU-01 1 120479990 120479990 C T NOTCH2 Missense_Mutation p.C1146Y 0.31 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GU-01 1 120510772 120510772 G A NOTCH2 Nonsense_Mutation p.Q398* 0.17 TCGA-HU-A4GU-01 1 12059139 12059139 A C MFN2 Missense_Mutation p.E268A 0.25 deleterious(0) probably_damaging(0.986) TCGA-HU-A4GU-01 1 120906047 120906047 C T RP11-439A17.4 5'Flank 0.22 TCGA-HU-A4GU-01 1 12262149 12262149 G A TNFRSF1B Silent p.A342A 0.47 TCGA-HU-A4GU-01 1 12887509 12887509 C G PRAMEF11 Missense_Mutation p.K116N 0.24 tolerated(0.13) possibly_damaging(0.864) TCGA-HU-A4GU-01 1 1290110 1290110 G - MXRA8 Frame_Shift_Del p.R301Gfs*107 0.34 TCGA-HU-A4GU-01 1 13942443 13942443 A - PDPN 3'UTR 0.20 TCGA-HU-A4GU-01 1 14107751 14107751 C A PRDM2 Missense_Mutation p.S1154Y 0.32 unknown(0) TCGA-HU-A4GU-01 1 145532147 145532147 G A ITGA10 Missense_Mutation p.R264Q 0.28 deleterious(0) probably_damaging(0.993) TCGA-HU-A4GU-01 1 145594051 145594051 C T POLR3C Missense_Mutation p.R504H 0.23 tolerated(0.29) benign(0) TCGA-HU-A4GU-01 1 148015781 148015781 G A NBPF14 Silent p.L290L 0.13 TCGA-HU-A4GU-01 1 150131688 150131688 G A PLEKHO1 Silent p.P400P 0.18 TCGA-HU-A4GU-01 1 150259051 150259051 T C C1orf51 Silent p.H281H 0.06 TCGA-HU-A4GU-01 1 150530584 150530584 C T ADAMTSL4 Missense_Mutation p.R781C 0.26 deleterious(0) probably_damaging(0.973) TCGA-HU-A4GU-01 1 151378679 151378679 A T POGZ Missense_Mutation p.D944E 0.09 tolerated(1) benign(0.001) TCGA-HU-A4GU-01 1 152005124 152005124 G T S100A11 3'UTR 0.08 TCGA-HU-A4GU-01 1 152279848 152279848 T C FLG Missense_Mutation p.H2505R 0.11 benign(0.064) TCGA-HU-A4GU-01 1 152286812 152286813 - T FLG Frame_Shift_Ins p.E184Rfs*6 0.18 TCGA-HU-A4GU-01 1 152552263 152552263 G A LCE3D Silent p.G50G 0.23 TCGA-HU-A4GU-01 1 152733277 152733277 C T KPRP Missense_Mutation p.R405C 0.29 tolerated(0.12) benign(0.082) TCGA-HU-A4GU-01 1 153665941 153665941 A T NPR1 3'UTR 0.22 TCGA-HU-A4GU-01 1 153701021 153701021 C - INTS3 5'UTR 0.21 TCGA-HU-A4GU-01 1 15390070 15390070 C T KAZN Silent p.G350G 0.20 TCGA-HU-A4GU-01 1 154248196 154248196 G A HAX1 3'UTR 0.21 TCGA-HU-A4GU-01 1 154295722 154295722 C A AQP10 Missense_Mutation p.L126I 0.27 tolerated(0.6) benign(0.14) TCGA-HU-A4GU-01 1 154517360 154517360 G A TDRD10 Missense_Mutation p.R296H 0.24 deleterious(0) probably_damaging(1) TCGA-HU-A4GU-01 1 154842106 154842106 G - KCNN3 Frame_Shift_Del p.P112Lfs*64 0.17 TCGA-HU-A4GU-01 1 155172646 155172646 G - THBS3 Frame_Shift_Del p.P305Lfs*181 0.14 TCGA-HU-A4GU-01 1 155290383 155290383 T C FDPS Missense_Mutation p.Y415H 0.33 deleterious(0.01) possibly_damaging(0.77) TCGA-HU-A4GU-01 1 155450513 155450513 T G ASH1L Missense_Mutation p.K716N 0.27 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-HU-A4GU-01 1 156046350 156046350 C T MEX3A 3'UTR 0.30 TCGA-HU-A4GU-01 1 156222250 156222250 C T SMG5 Missense_Mutation p.R903Q 0.20 tolerated(0.08) probably_damaging(0.999) TCGA-HU-A4GU-01 1 156916756 156916756 T C ARHGEF11 Missense_Mutation p.K847R 0.52 tolerated(0.24) benign(0.001) TCGA-HU-A4GU-01 1 158324361 158324361 T G CD1E Missense_Mutation p.F85V 0.64 deleterious(0) possibly_damaging(0.471) TCGA-HU-A4GU-01 1 158390296 158390296 C A OR10K2 Missense_Mutation p.D121Y 0.27 deleterious(0) probably_damaging(0.966) TCGA-HU-A4GU-01 1 158577073 158577073 C - OR10Z1 Frame_Shift_Del p.L284Sfs*9 0.16 TCGA-HU-A4GU-01 1 158596785 158596785 C T SPTA1 Missense_Mutation p.E1893K 0.25 tolerated(0.49) benign(0.015) TCGA-HU-A4GU-01 1 158639574 158639574 A G SPTA1 Silent p.T534T 0.29 TCGA-HU-A4GU-01 1 158913704 158913704 G T PYHIN1 Missense_Mutation p.C376F 0.21 deleterious(0.01) probably_damaging(1) TCGA-HU-A4GU-01 1 159899451 159899451 C T IGSF9 Missense_Mutation p.R768H 0.27 tolerated(0.38) benign(0.021) TCGA-HU-A4GU-01 1 160145892 160145892 C A ATP1A4 Silent p.I774I 0.25 TCGA-HU-A4GU-01 1 160340509 160340509 G - NHLH1 5'UTR 0.27 TCGA-HU-A4GU-01 1 160851041 160851041 G A ITLN1 Missense_Mutation p.S156F 0.23 tolerated(0.08) possibly_damaging(0.851) TCGA-HU-A4GU-01 1 161042656 161042656 C T PVRL4 Missense_Mutation p.R443H 0.20 tolerated(0.1) probably_damaging(0.945) TCGA-HU-A4GU-01 1 161495588 161495588 C T HSPA6 Silent p.A380A 0.38 TCGA-HU-A4GU-01 1 16202716 16202716 C T SPEN Missense_Mutation p.R142C 0.17 probably_damaging(0.997) TCGA-HU-A4GU-01 1 162336931 162336931 C A RP11-565P22.6 Missense_Mutation p.L85M 0.25 deleterious(0.04) possibly_damaging(0.66) TCGA-HU-A4GU-01 1 16260465 16260465 A G SPEN Missense_Mutation p.D2577G 0.27 benign(0.07) TCGA-HU-A4GU-01 1 16461656 16461656 C T EPHA2 Missense_Mutation p.R486H 0.22 deleterious(0.04) benign(0.408) TCGA-HU-A4GU-01 1 166818871 166818871 C T POGK Missense_Mutation p.A352V 0.27 tolerated(0.23) benign(0.007) TCGA-HU-A4GU-01 1 16721707 16721707 C T SZRD1 3'UTR 0.21 TCGA-HU-A4GU-01 1 171494089 171494089 A G PRRC2C Silent p.G393G 0.35 TCGA-HU-A4GU-01 1 171763606 171763606 G A METTL13 Silent p.P588P 0.30 TCGA-HU-A4GU-01 1 172539198 172539198 C T SUCO Missense_Mutation p.H290Y 0.41 tolerated(0.1) benign(0.175) TCGA-HU-A4GU-01 1 173526624 173526624 C T SLC9C2 Missense_Mutation p.S357N 0.06 deleterious(0) probably_damaging(0.932) TCGA-HU-A4GU-01 1 175048603 175048603 G A TNN Missense_Mutation p.V182M 0.27 deleterious(0.03) possibly_damaging(0.479) TCGA-HU-A4GU-01 1 175066603 175066603 G A TNN Missense_Mutation p.A547T 0.11 tolerated(0.12) benign(0.096) TCGA-HU-A4GU-01 1 17575654 17575654 C T PADI3 Missense_Mutation p.R8C 0.10 tolerated(0.06) probably_damaging(0.983) TCGA-HU-A4GU-01 1 18023681 18023681 G A ARHGEF10L Missense_Mutation p.D1216N 0.21 deleterious(0) probably_damaging(0.95) TCGA-HU-A4GU-01 1 182026251 182026251 G T ZNF648 Missense_Mutation p.R299S 0.08 deleterious(0) probably_damaging(0.986) TCGA-HU-A4GU-01 1 182775303 182775303 C A NPL Missense_Mutation p.L56M 0.22 tolerated(0.28) possibly_damaging(0.506) TCGA-HU-A4GU-01 1 183204789 183204789 C T LAMC2 Missense_Mutation p.R794C 0.22 tolerated(0.08) possibly_damaging(0.591) TCGA-HU-A4GU-01 1 183944265 183944265 C G COLGALT2 Missense_Mutation p.R153P 0.19 tolerated(0.06) possibly_damaging(0.677) TCGA-HU-A4GU-01 1 185970773 185970773 G A HMCN1 Silent p.L1416L 0.18 TCGA-HU-A4GU-01 1 186092202 186092202 C T HMCN1 Missense_Mutation p.R4117C 0.19 possibly_damaging(0.606) TCGA-HU-A4GU-01 1 190067119 190067119 A G BRINP3 3'UTR 0.21 TCGA-HU-A4GU-01 1 1956993 1956993 C T GABRD Missense_Mutation p.R96W 0.08 deleterious(0) probably_damaging(0.989) TCGA-HU-A4GU-01 1 19630817 19630817 C T AKR7A2 Missense_Mutation p.A328T 0.20 tolerated(0.2) benign(0.054) TCGA-HU-A4GU-01 1 196759259 196759259 C T CFHR3 Missense_Mutation p.S233L 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-HU-A4GU-01 1 197071707 197071707 G T ASPM Missense_Mutation p.A2225E 0.37 deleterious(0) possibly_damaging(0.901) TCGA-HU-A4GU-01 1 197396685 197396685 C T CRB1 Nonsense_Mutation p.R744* 0.29 TCGA-HU-A4GU-01 1 201618272 201618272 C - NAV1 Frame_Shift_Del p.L161Wfs*33 0.43 TCGA-HU-A4GU-01 1 202092388 202092388 G A GPR37L1 Silent p.G99G 0.43 TCGA-HU-A4GU-01 1 202288271 202288271 G A LGR6 Missense_Mutation p.G947D 0.30 tolerated_low_confidence(0.07) benign(0) TCGA-HU-A4GU-01 1 203139557 203139557 G A MYBPH Missense_Mutation p.R319C 0.41 deleterious(0.01) probably_damaging(0.953) TCGA-HU-A4GU-01 1 203797471 203797471 A G ZC3H11A Silent p.T73T 0.51 TCGA-HU-A4GU-01 1 204948558 204948558 G A NFASC Missense_Mutation p.G683S 0.36 tolerated(0.06) probably_damaging(0.996) TCGA-HU-A4GU-01 1 205892468 205892468 C T SLC26A9 Missense_Mutation p.A552T 0.38 tolerated(0.28) possibly_damaging(0.523) TCGA-HU-A4GU-01 1 207651401 207651401 C T CR2 Missense_Mutation p.A1025V 0.23 deleterious(0.02) probably_damaging(0.984) TCGA-HU-A4GU-01 1 207669657 207669657 G A CR1 Silent p.P15P 0.10 TCGA-HU-A4GU-01 1 207867814 207867814 A - CR1L Frame_Shift_Del p.K195Rfs*56 0.28 TCGA-HU-A4GU-01 1 209790919 209790919 G A LAMB3 Silent p.L1022L 0.07 TCGA-HU-A4GU-01 1 212141284 212141284 G A INTS7 Nonsense_Mutation p.R684* 0.44 TCGA-HU-A4GU-01 1 214169895 214169895 G A PROX1 Missense_Mutation p.S6N 0.37 deleterious_low_confidence(0.03) benign(0.001) TCGA-HU-A4GU-01 1 214819474 214819474 A - CENPF Frame_Shift_Del p.T2189Hfs*3 0.38 TCGA-HU-A4GU-01 1 214830653 214830653 A - CENPF Frame_Shift_Del p.S2957Afs*6 0.28 TCGA-HU-A4GU-01 1 220928350 220928350 G A MARC2 Missense_Mutation p.V112M 0.21 deleterious(0.02) possibly_damaging(0.782) TCGA-HU-A4GU-01 1 22192298 22192298 G A HSPG2 Missense_Mutation p.A1409V 0.10 possibly_damaging(0.547) TCGA-HU-A4GU-01 1 222846720 222846720 T C AIDA Missense_Mutation p.E214G 0.20 deleterious(0.01) possibly_damaging(0.767) TCGA-HU-A4GU-01 1 223283951 223283951 C - TLR5 Frame_Shift_Del p.G808Afs*9 0.20 TCGA-HU-A4GU-01 1 223568121 223568121 T G C1orf65 Missense_Mutation p.V435G 0.21 deleterious(0.02) possibly_damaging(0.727) TCGA-HU-A4GU-01 1 223989893 223989893 T C TP53BP2 Missense_Mutation p.I384V 0.12 tolerated(0.62) benign(0) TCGA-HU-A4GU-01 1 225707109 225707109 C T ENAH Missense_Mutation p.R198Q 0.40 tolerated_low_confidence(0.6) unknown(0) TCGA-HU-A4GU-01 1 226835021 226835021 C T ITPKB Missense_Mutation p.R698H 0.19 deleterious(0.01) probably_damaging(0.935) TCGA-HU-A4GU-01 1 227152799 227152799 C T ADCK3 Silent p.D92D 0.26 TCGA-HU-A4GU-01 1 227227916 227227917 - A CDC42BPA Frame_Shift_Ins p.V1004Cfs*28 0.21 TCGA-HU-A4GU-01 1 227920745 227920745 G A SNAP47 5'Flank 0.17 TCGA-HU-A4GU-01 1 228288772 228288772 G T C1orf35 3'UTR 0.25 TCGA-HU-A4GU-01 1 22843928 22843928 G A ZBTB40 Missense_Mutation p.G935D 0.36 deleterious(0) probably_damaging(0.931) TCGA-HU-A4GU-01 1 228462328 228462328 C T OBSCN Silent p.G2288G 0.18 TCGA-HU-A4GU-01 1 228509885 228509885 C T OBSCN Missense_Mutation p.P6072S 0.28 benign(0.167) TCGA-HU-A4GU-01 1 228548110 228548110 A T OBSCN Intron 0.25 TCGA-HU-A4GU-01 1 228548465 228548465 C T OBSCN Intron 0.14 TCGA-HU-A4GU-01 1 22974052 22974052 G A C1QC Missense_Mutation p.A172T 0.15 tolerated(0.7) benign(0.065) TCGA-HU-A4GU-01 1 229772212 229772212 G A URB2 Missense_Mutation p.A618T 0.22 tolerated(1) benign(0.001) TCGA-HU-A4GU-01 1 230846219 230846219 G A AGT Silent p.G126G 0.21 TCGA-HU-A4GU-01 1 231830305 231830305 T G DISC1 Missense_Mutation p.S267R 0.20 tolerated(0.15) benign(0.11) TCGA-HU-A4GU-01 1 232144539 232144539 G T DISC1 Missense_Mutation p.C684F 0.51 deleterious(0) possibly_damaging(0.834) TCGA-HU-A4GU-01 1 233397814 233397814 A G PCNXL2 Missense_Mutation p.S153P 0.15 deleterious(0.05) probably_damaging(0.945) TCGA-HU-A4GU-01 1 234041293 234041293 G A SLC35F3 Silent p.P24P 0.23 TCGA-HU-A4GU-01 1 235323838 235323838 T - RBM34 Frame_Shift_Del p.K118Sfs*9 0.20 TCGA-HU-A4GU-01 1 235505516 235505516 C T GGPS1 Missense_Mutation p.A111V 0.18 tolerated(0.15) benign(0.221) TCGA-HU-A4GU-01 1 240286542 240286542 A C FMN2 Missense_Mutation p.K560T 0.23 unknown(0) TCGA-HU-A4GU-01 1 240371894 240371894 G T FMN2 Missense_Mutation p.G1261V 0.42 probably_damaging(1) TCGA-HU-A4GU-01 1 242020674 242020674 C A EXO1 Missense_Mutation p.L145I 0.21 tolerated(1) benign(0.067) TCGA-HU-A4GU-01 1 244643032 244643032 G A C1orf101 Missense_Mutation p.R91H 0.23 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GU-01 1 247582207 247582207 C T NLRP3 Silent p.G37G 0.10 TCGA-HU-A4GU-01 1 247752027 247752027 C A OR2G2 Silent p.S122S 0.25 TCGA-HU-A4GU-01 1 248084575 248084575 G A OR2T8 Missense_Mutation p.G86R 0.17 deleterious(0.01) possibly_damaging(0.88) TCGA-HU-A4GU-01 1 248202020 248202020 A C OR2L2 Missense_Mutation p.S151R 0.30 deleterious(0) benign(0.315) TCGA-HU-A4GU-01 1 248436861 248436861 C T OR2T33 Missense_Mutation p.G86R 0.05 deleterious(0.01) possibly_damaging(0.88) TCGA-HU-A4GU-01 1 248802016 248802016 G T OR2T35 Missense_Mutation p.P182T 0.69 deleterious(0) probably_damaging(1) TCGA-HU-A4GU-01 1 25611170 25611170 G A RHD Silent p.A85A 0.12 TCGA-HU-A4GU-01 1 25818071 25818071 C A TMEM57 Silent p.A596A 0.28 TCGA-HU-A4GU-01 1 25880532 25880532 G A LDLRAP1 Missense_Mutation p.A70T 0.22 deleterious(0) probably_damaging(0.991) TCGA-HU-A4GU-01 1 26104649 26104649 C A MAN1C1 Silent p.A437A 0.18 TCGA-HU-A4GU-01 1 26516001 26516001 C A CNKSR1 Missense_Mutation p.L702M 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.653) TCGA-HU-A4GU-01 1 26517892 26517892 G A CATSPER4 Missense_Mutation p.A110T 0.30 deleterious(0) probably_damaging(0.911) TCGA-HU-A4GU-01 1 26644634 26644635 TG - UBXN11 5'UTR 0.31 TCGA-HU-A4GU-01 1 27106535 27106535 G - ARID1A Frame_Shift_Del p.W2049Cfs*86 0.18 TCGA-HU-A4GU-01 1 27278877 27278877 A G C1orf172 5'UTR 0.11 TCGA-HU-A4GU-01 1 27685239 27685239 G - MAP3K6 Frame_Shift_Del p.F849Sfs*143 0.27 TCGA-HU-A4GU-01 1 27687237 27687237 C T MAP3K6 Silent p.R671R 0.11 TCGA-HU-A4GU-01 1 29386935 29386935 A G EPB41 Missense_Mutation p.K649R 0.13 tolerated(0.09) probably_damaging(0.983) TCGA-HU-A4GU-01 1 29586016 29586016 C T PTPRU Silent p.N205N 0.25 TCGA-HU-A4GU-01 1 29650282 29650282 G A PTPRU Missense_Mutation p.R1375H 0.30 deleterious(0) probably_damaging(1) TCGA-HU-A4GU-01 1 31347370 31347370 C - SDC3 Frame_Shift_Del p.S314Vfs*21 0.23 TCGA-HU-A4GU-01 1 32131489 32131489 G A COL16A1 Silent p.G1150G 0.23 TCGA-HU-A4GU-01 1 32557330 32557330 C T TMEM39B Silent p.S215S 0.25 TCGA-HU-A4GU-01 1 32673633 32673633 G T IQCC Nonsense_Mutation p.G531* 0.31 TCGA-HU-A4GU-01 1 35331731 35331731 C T DLGAP3 Missense_Mutation p.A965T 0.15 deleterious(0) probably_damaging(0.996) TCGA-HU-A4GU-01 1 37941105 37941105 G A ZC3H12A Missense_Mutation p.G3D 0.23 tolerated_low_confidence(0.41) benign(0) TCGA-HU-A4GU-01 1 38330097 38330097 T C INPP5B Splice_Site p.X839_splice 0.17 TCGA-HU-A4GU-01 1 40149645 40149645 C T HPCAL4 Silent p.G114G 0.33 TCGA-HU-A4GU-01 1 40363267 40363267 C T MYCL Missense_Mutation p.R321H 0.19 deleterious(0) possibly_damaging(0.733) TCGA-HU-A4GU-01 1 41540998 41540998 G A SCMH1 Missense_Mutation p.R281W 0.25 deleterious(0) benign(0.023) TCGA-HU-A4GU-01 1 43779120 43779120 C - TIE1 Intron 0.21 TCGA-HU-A4GU-01 1 43783574 43783574 A G TIE1 Missense_Mutation p.E918G 0.08 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GU-01 1 43851888 43851888 G A MED8 Missense_Mutation p.P168L 0.28 tolerated(0.41) benign(0.002) TCGA-HU-A4GU-01 1 43888841 43888841 G A SZT2 Silent p.T703T 0.47 TCGA-HU-A4GU-01 1 43914078 43914078 C T SZT2 Missense_Mutation p.R3241C 0.50 deleterious(0) probably_damaging(0.99) TCGA-HU-A4GU-01 1 44072062 44072062 G A PTPRF Missense_Mutation p.R1212Q 0.28 tolerated(0.1) benign(0.015) TCGA-HU-A4GU-01 1 44446847 44446847 G - B4GALT2 Frame_Shift_Del p.T37Rfs*102 0.26 TCGA-HU-A4GU-01 1 44474227 44474227 C T SLC6A9 Missense_Mutation p.A203T 0.07 tolerated(1) probably_damaging(1) TCGA-HU-A4GU-01 1 45973942 45973942 G A MMACHC Missense_Mutation p.R112H 0.14 deleterious(0) probably_damaging(0.913) TCGA-HU-A4GU-01 1 46086449 46086449 C T CCDC17 Silent p.Q552Q 0.38 TCGA-HU-A4GU-01 1 48701405 48701405 G A SLC5A9 Silent p.L407L 0.23 TCGA-HU-A4GU-01 1 54870294 54870294 T - SSBP3 Frame_Shift_Del p.N49Tfs*95 0.21 TCGA-HU-A4GU-01 1 57420464 57420464 T C C8B Missense_Mutation p.D143G 0.27 deleterious(0) probably_damaging(0.987) TCGA-HU-A4GU-01 1 57476396 57476396 T C DAB1 Missense_Mutation p.D547G 0.24 deleterious_low_confidence(0) probably_damaging(0.911) TCGA-HU-A4GU-01 1 59247823 59247823 T C JUN Missense_Mutation p.Q307R 0.20 tolerated(0.07) benign(0.159) TCGA-HU-A4GU-01 1 5965427 5965427 G A NPHP4 Missense_Mutation p.T627M 0.28 tolerated(0.1) benign(0.045) TCGA-HU-A4GU-01 1 5965471 5965471 G T NPHP4 Silent p.A612A 0.11 TCGA-HU-A4GU-01 1 6206878 6206878 C T CHD5 Silent p.E479E 0.16 TCGA-HU-A4GU-01 1 62455951 62455951 G A INADL Missense_Mutation p.R1261H 0.28 deleterious(0.01) benign(0.07) TCGA-HU-A4GU-01 1 62550223 62550223 C T INADL Missense_Mutation p.T1427M 0.32 tolerated(0.07) possibly_damaging(0.56) TCGA-HU-A4GU-01 1 63070402 63070402 T C ANGPTL3 Missense_Mutation p.S433P 0.28 tolerated(0.12) benign(0.342) TCGA-HU-A4GU-01 1 6488424 6488424 G A ESPN Missense_Mutation p.A145T 0.06 deleterious(0) probably_damaging(0.979) TCGA-HU-A4GU-01 1 6712907 6712907 C T DNAJC11 Silent p.S204S 0.26 TCGA-HU-A4GU-01 1 75740675 75740675 G A SLC44A5 Silent p.G76G 0.12 TCGA-HU-A4GU-01 1 76215155 76215155 G T ACADM Missense_Mutation p.D258Y 0.18 deleterious(0) probably_damaging(0.92) TCGA-HU-A4GU-01 1 7826582 7826582 A G CAMTA1 3'UTR 0.20 TCGA-HU-A4GU-01 1 78585146 78585146 G A GIPC2 Missense_Mutation p.R226H 0.09 deleterious(0) probably_damaging(0.99) TCGA-HU-A4GU-01 1 82456582 82456582 T G LPHN2 Missense_Mutation p.L1322R 0.30 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-HU-A4GU-01 1 86515849 86515849 G T COL24A1 Silent p.G621G 0.19 TCGA-HU-A4GU-01 1 89237165 89237165 A G PKN2 Missense_Mutation p.I228M 0.24 deleterious(0) probably_damaging(0.961) TCGA-HU-A4GU-01 1 90399442 90399442 G A LRRC8D Missense_Mutation p.S272N 0.25 deleterious(0.02) benign(0.009) TCGA-HU-A4GU-01 1 91727836 91727836 A - HFM1 Frame_Shift_Del p.F1400Lfs*25 0.25 TCGA-HU-A4GU-01 1 9416386 9416386 C T SPSB1 Missense_Mutation p.R146C 0.24 deleterious(0) probably_damaging(0.997) TCGA-HU-A4GU-01 1 99771789 99771789 G A LPPR4 Silent p.Q505Q 0.19 TCGA-HU-A4GU-01 1 99771907 99771907 A C LPPR4 Missense_Mutation p.S545R 0.22 tolerated(0.3) benign(0.043) TCGA-HU-A4GU-01 20 11904377 11904377 C T BTBD3 3'UTR 0.24 TCGA-HU-A4GU-01 20 18470617 18470617 A G RBBP9 Missense_Mutation p.W118R 0.07 deleterious(0.01) probably_damaging(1) TCGA-HU-A4GU-01 20 19496186 19496186 C T SLC24A3 Missense_Mutation p.A109V 0.17 deleterious(0) benign(0.245) TCGA-HU-A4GU-01 20 20243636 20243636 C A C20orf26 Missense_Mutation p.L789M 0.17 tolerated(0.23) benign(0.234) TCGA-HU-A4GU-01 20 20601136 20601137 - T RALGAPA2 Frame_Shift_Ins p.L458Ifs*7 0.20 TCGA-HU-A4GU-01 20 21377059 21377059 T C NKX2-4 Silent p.A185A 0.25 TCGA-HU-A4GU-01 20 21377937 21377937 G A NKX2-4 Missense_Mutation p.A34V 0.27 tolerated(0.14) possibly_damaging(0.707) TCGA-HU-A4GU-01 20 21492525 21492525 C A NKX2-2 3'UTR 0.22 TCGA-HU-A4GU-01 20 23028480 23028480 G A THBD Silent p.C554C 0.21 TCGA-HU-A4GU-01 20 23065616 23065616 C T CD93 Missense_Mutation p.G405D 0.16 tolerated(0.05) probably_damaging(1) TCGA-HU-A4GU-01 20 25277134 25277134 G A PYGB Silent p.P836P 0.12 TCGA-HU-A4GU-01 20 2593877 2593877 C T TMC2 Missense_Mutation p.T594M 0.16 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GU-01 20 3145314 3145314 C T LZTS3 Missense_Mutation p.R603H 0.20 tolerated(0.82) benign(0.073) TCGA-HU-A4GU-01 20 31622664 31622664 A C BPIFB6 Missense_Mutation p.K133T 0.14 tolerated(0.27) benign(0.054) TCGA-HU-A4GU-01 20 31671497 31671497 C T BPIFB4 Missense_Mutation p.A165V 0.13 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-HU-A4GU-01 20 32266038 32266038 G A E2F1 Missense_Mutation p.R232C 0.10 deleterious(0) possibly_damaging(0.802) TCGA-HU-A4GU-01 20 32298462 32298462 G A PXMP4 Nonsense_Mutation p.Q92* 0.21 TCGA-HU-A4GU-01 20 33851679 33851679 G A MMP24 Silent p.A301A 0.11 TCGA-HU-A4GU-01 20 34099444 34099444 G A CEP250 Missense_Mutation p.A2440T 0.52 benign(0.002) TCGA-HU-A4GU-01 20 34832708 34832708 C A AAR2 Silent p.R283R 0.19 TCGA-HU-A4GU-01 20 34843569 34843569 G A AAR2 Missense_Mutation p.A353T 0.17 tolerated(0.29) benign(0.018) TCGA-HU-A4GU-01 20 37546809 37546809 C T PPP1R16B Silent p.L402L 0.19 TCGA-HU-A4GU-01 20 37546995 37546995 G A PPP1R16B Missense_Mutation p.D464N 0.21 tolerated(0.08) benign(0.012) TCGA-HU-A4GU-01 20 37632521 37632521 T C DHX35 Missense_Mutation p.F328L 0.18 deleterious(0.01) probably_damaging(1) TCGA-HU-A4GU-01 20 39317182 39317182 C T MAFB Silent p.T103T 0.20 TCGA-HU-A4GU-01 20 3944542 3944542 G T RNF24 Silent p.L62L 0.11 TCGA-HU-A4GU-01 20 40068644 40068644 C T CHD6 Missense_Mutation p.E1335K 0.19 deleterious(0.03) possibly_damaging(0.66) TCGA-HU-A4GU-01 20 40713420 40713420 C T PTPRT Silent p.T1346T 0.19 TCGA-HU-A4GU-01 20 40730848 40730848 G A PTPRT Silent p.D1210D 0.16 TCGA-HU-A4GU-01 20 42169776 42169776 T - L3MBTL1 3'UTR 0.22 TCGA-HU-A4GU-01 20 43058338 43058338 C - HNF4A 3'UTR 0.16 TCGA-HU-A4GU-01 20 43379275 43379275 G A KCNK15 Silent p.P263P 0.26 TCGA-HU-A4GU-01 20 43927120 43927120 C A MATN4 Silent p.V372V 0.13 TCGA-HU-A4GU-01 20 43933374 43933374 C T MATN4 Missense_Mutation p.R46H 0.12 probably_damaging(1) TCGA-HU-A4GU-01 20 44576240 44576240 C T PCIF1 Missense_Mutation p.A654V 0.22 tolerated(0.09) benign(0) TCGA-HU-A4GU-01 20 44580806 44580806 G T ZNF335 Missense_Mutation p.R1057S 0.14 tolerated(0.45) benign(0.002) TCGA-HU-A4GU-01 20 45131398 45131398 C T ZNF334 Missense_Mutation p.E194K 0.11 deleterious(0.04) benign(0.296) TCGA-HU-A4GU-01 20 45315440 45315440 T - TP53RK Frame_Shift_Del p.K238Nfs*2 0.21 TCGA-HU-A4GU-01 20 46268496 46268496 G A NCOA3 Silent p.L961L 0.22 TCGA-HU-A4GU-01 20 4705463 4705463 T A PRND Missense_Mutation p.I89N 0.14 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-HU-A4GU-01 20 4705547 4705548 - G PRND Frame_Shift_Ins p.E119Gfs*78 0.13 TCGA-HU-A4GU-01 20 47866123 47866123 G T ZNFX1 Nonsense_Mutation p.C1146* 0.16 TCGA-HU-A4GU-01 20 48257081 48257081 C T B4GALT5 Missense_Mutation p.R243H 0.20 tolerated(0.15) possibly_damaging(0.479) TCGA-HU-A4GU-01 20 489170 489170 G T CSNK2A1 Missense_Mutation p.A9D 0.08 deleterious(0) possibly_damaging(0.774) TCGA-HU-A4GU-01 20 49576420 49576421 - G MOCS3 Frame_Shift_Ins p.A349Gfs*69 0.15 TCGA-HU-A4GU-01 20 50139752 50139752 C T NFATC2 Missense_Mutation p.R343H 0.20 tolerated(0.14) possibly_damaging(0.715) TCGA-HU-A4GU-01 20 50407649 50407649 G A SALL4 Missense_Mutation p.A458V 0.06 deleterious(0.03) benign(0.031) TCGA-HU-A4GU-01 20 50701394 50701394 C A ZFP64 Missense_Mutation p.R547M 0.23 tolerated(0.07) possibly_damaging(0.653) TCGA-HU-A4GU-01 20 50776842 50776842 G A ZFP64 Missense_Mutation p.R195W 0.24 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GU-01 20 5559030 5559030 A - GPCPD1 Frame_Shift_Del p.F234Sfs*9 0.23 TCGA-HU-A4GU-01 20 55748159 55748159 A G BMP7 Intron 0.33 TCGA-HU-A4GU-01 20 56138777 56138777 G A PCK1 Missense_Mutation p.A319T 0.22 tolerated(0.09) benign(0.002) TCGA-HU-A4GU-01 20 57599554 57599554 C - TUBB1 Frame_Shift_Del p.R359Gfs*3 0.25 TCGA-HU-A4GU-01 20 57766431 57766431 C T ZNF831 Silent p.G119G 0.18 TCGA-HU-A4GU-01 20 57767406 57767406 G A ZNF831 Silent p.T444T 0.10 TCGA-HU-A4GU-01 20 5966634 5966634 C A MCM8 Silent p.R674R 0.14 TCGA-HU-A4GU-01 20 6022874 6022874 G A LRRN4 Silent p.C339C 0.13 TCGA-HU-A4GU-01 20 6031513 6031513 G A LRRN4 Silent p.L258L 0.44 TCGA-HU-A4GU-01 20 60511884 60511884 C T CDH4 Silent p.G878G 0.09 TCGA-HU-A4GU-01 20 60963012 60963012 G A RPS21 Intron 0.17 TCGA-HU-A4GU-01 20 6096554 6096554 G A FERMT1 Silent p.L97L 0.23 TCGA-HU-A4GU-01 20 61340658 61340658 G A NTSR1 Silent p.P33P 0.15 TCGA-HU-A4GU-01 20 61467861 61467861 A G COL9A3 Missense_Mutation p.E527G 0.26 deleterious(0) probably_damaging(0.993) TCGA-HU-A4GU-01 20 61473220 61473220 G A TCFL5 3'UTR 0.23 TCGA-HU-A4GU-01 20 62127345 62127345 A G EEF1A2 Missense_Mutation p.L63P 0.20 deleterious_low_confidence(0) probably_damaging(1) TCGA-HU-A4GU-01 20 62340125 62340125 G A ZGPAT Missense_Mutation p.A65T 0.48 tolerated(1) benign(0.004) TCGA-HU-A4GU-01 20 62587751 62587751 C A UCKL1 5'UTR 0.20 TCGA-HU-A4GU-01 20 62664278 62664278 G A PRPF6 Missense_Mutation p.A920T 0.16 tolerated(0.36) benign(0) TCGA-HU-A4GU-01 20 8678275 8678275 G A PLCB1 Missense_Mutation p.G338S 0.17 deleterious(0.03) possibly_damaging(0.472) TCGA-HU-A4GU-01 20 8696934 8696934 C T PLCB1 Missense_Mutation p.A425V 0.23 deleterious(0) probably_damaging(0.981) TCGA-HU-A4GU-01 20 9368189 9368189 G T PLCB4 Missense_Mutation p.D382Y 0.15 deleterious(0) probably_damaging(1) TCGA-HU-A4GU-01 21 16340025 16340025 G T NRIP1 Silent p.A163A 0.14 TCGA-HU-A4GU-01 21 17199417 17199417 G T USP25 Missense_Mutation p.D530Y 0.07 deleterious(0) possibly_damaging(0.679) TCGA-HU-A4GU-01 21 27394342 27394342 C T APP Missense_Mutation p.E227K 0.36 tolerated(0.15) unknown(0) TCGA-HU-A4GU-01 21 31538754 31538754 C T CLDN17 Missense_Mutation p.R61Q 0.74 deleterious(0.02) benign(0.409) TCGA-HU-A4GU-01 21 31691649 31691649 A T KRTAP26-1 3'UTR 0.36 TCGA-HU-A4GU-01 21 32007684 32007684 C T KRTAP20-2 Silent p.G34G 0.35 TCGA-HU-A4GU-01 21 33974515 33974515 C T C21orf59 Intron 0.34 TCGA-HU-A4GU-01 21 33982177 33982177 T - AP000275.65 Frame_Shift_Del p.K93Rfs*16 0.12 TCGA-HU-A4GU-01 21 35183448 35183448 G A ITSN1 Missense_Mutation p.R830H 0.04 tolerated(0.15) benign(0.003) TCGA-HU-A4GU-01 21 36171665 36171665 C T RUNX1 Silent p.T300T 0.16 TCGA-HU-A4GU-01 21 37618196 37618196 C - DOPEY2 Frame_Shift_Del p.H1308Tfs*13 0.26 TCGA-HU-A4GU-01 21 40794826 40794826 C T LCA5L Intron 0.38 TCGA-HU-A4GU-01 21 42780165 42780165 C T MX2 3'UTR 0.19 TCGA-HU-A4GU-01 21 45504008 45504008 G T TRAPPC10 Missense_Mutation p.K748N 0.23 tolerated(0.33) benign(0.024) TCGA-HU-A4GU-01 21 46596496 46596496 G A ADARB1 Missense_Mutation p.A294T 0.35 tolerated(0.37) probably_damaging(0.994) TCGA-HU-A4GU-01 21 46888631 46888631 C T COL18A1 Silent p.G374G 0.35 TCGA-HU-A4GU-01 21 47664720 47664720 C - MCM3AP Splice_Site p.X1680_splice 0.13 TCGA-HU-A4GU-01 21 47985786 47985786 C T DIP2A Missense_Mutation p.T1442I 0.38 tolerated(0.21) probably_damaging(0.992) TCGA-HU-A4GU-01 22 17489005 17489005 G - GAB4 5'UTR 0.43 TCGA-HU-A4GU-01 22 17601186 17601186 C T CECR6 Missense_Mutation p.A278T 0.44 tolerated_low_confidence(0.13) unknown(0) TCGA-HU-A4GU-01 22 17601202 17601202 C T CECR6 Silent p.P272P 0.36 TCGA-HU-A4GU-01 22 17976597 17976597 C T CECR2 Silent p.D87D 0.36 TCGA-HU-A4GU-01 22 19119916 19119916 A G TSSK2 Missense_Mutation p.D335G 0.35 tolerated_low_confidence(0.14) benign(0.001) TCGA-HU-A4GU-01 22 19789618 19789618 T C GNB1L Missense_Mutation p.D213G 0.27 tolerated(0.95) benign(0) TCGA-HU-A4GU-01 22 20130500 20130500 G T ZDHHC8 Missense_Mutation p.Q449H 0.29 tolerated(0.42) probably_damaging(0.997) TCGA-HU-A4GU-01 22 21322240 21322240 G A AIFM3 Missense_Mutation p.G3D 0.41 deleterious_low_confidence(0) probably_damaging(0.911) TCGA-HU-A4GU-01 22 21354389 21354389 G A THAP7 Missense_Mutation p.A237V 0.14 deleterious(0.03) possibly_damaging(0.815) TCGA-HU-A4GU-01 22 21800451 21800451 G A HIC2 Missense_Mutation p.A423T 0.38 tolerated(0.34) possibly_damaging(0.821) TCGA-HU-A4GU-01 22 22285617 22285617 G A PPM1F Missense_Mutation p.A265V 0.12 deleterious(0.05) benign(0.067) TCGA-HU-A4GU-01 22 22724212 22724212 A C IGLV7-46 Silent p.T36T 0.39 TCGA-HU-A4GU-01 22 23968220 23968220 C T C22orf43 Missense_Mutation p.R75H 0.20 tolerated_low_confidence(0.47) possibly_damaging(0.476) TCGA-HU-A4GU-01 22 24219298 24219298 C T AP000350.10 Missense_Mutation p.A124V 0.17 deleterious(0.01) possibly_damaging(0.461) TCGA-HU-A4GU-01 22 24483489 24483489 G A CABIN1 Silent p.G1116G 0.29 TCGA-HU-A4GU-01 22 24573493 24573493 C T CABIN1 Missense_Mutation p.P2076L 0.13 tolerated_low_confidence(0.12) benign(0) TCGA-HU-A4GU-01 22 24580178 24580178 G A SUSD2 Missense_Mutation p.A172T 0.27 tolerated(0.1) benign(0.006) TCGA-HU-A4GU-01 22 24628050 24628050 G A GGT5 Silent p.G241G 0.24 TCGA-HU-A4GU-01 22 25297812 25297812 G A SGSM1 Missense_Mutation p.D930N 0.17 deleterious(0.01) possibly_damaging(0.792) TCGA-HU-A4GU-01 22 26423175 26423175 C A MYO18B Missense_Mutation p.A2412D 0.18 deleterious(0) possibly_damaging(0.678) TCGA-HU-A4GU-01 22 26995521 26995521 C T CRYBB1 Missense_Mutation p.R231H 0.20 deleterious(0.02) probably_damaging(0.965) TCGA-HU-A4GU-01 22 28193535 28193535 C T MN1 Silent p.T999T 0.21 TCGA-HU-A4GU-01 22 29656789 29656789 G A RHBDD3 Silent p.G199G 0.38 TCGA-HU-A4GU-01 22 29737717 29737717 G T AP1B1 Silent p.G523G 0.16 TCGA-HU-A4GU-01 22 30415613 30415613 C T MTMR3 Silent p.G655G 0.15 TCGA-HU-A4GU-01 22 30688804 30688804 G A TBC1D10A Missense_Mutation p.R370C 0.18 deleterious(0) possibly_damaging(0.899) TCGA-HU-A4GU-01 22 31487683 31487683 G A SMTN Silent p.A494A 0.09 TCGA-HU-A4GU-01 22 33255323 33255324 - C TIMP3 Frame_Shift_Ins p.D202Gfs*2 0.19 TCGA-HU-A4GU-01 22 35661161 35661161 A G HMGXB4 Silent p.S260S 0.16 TCGA-HU-A4GU-01 22 37271883 37271883 G A NCF4 Silent p.L272L 0.17 TCGA-HU-A4GU-01 22 37425350 37425350 G A MPST Missense_Mutation p.R250H 0.19 tolerated(0.12) benign(0.002) TCGA-HU-A4GU-01 22 37466617 37466617 G T TMPRSS6 Missense_Mutation p.A592D 0.21 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GU-01 22 38369822 38369822 C T SOX10 Missense_Mutation p.A361T 0.16 tolerated(0.21) benign(0.026) TCGA-HU-A4GU-01 22 38528935 38528935 C T PLA2G6 Missense_Mutation p.R327H 0.56 deleterious(0) probably_damaging(0.996) TCGA-HU-A4GU-01 22 39066881 39066881 G A CBY1 Intron 0.22 TCGA-HU-A4GU-01 22 39134698 39134698 C T SUN2 Missense_Mutation p.R635H 0.41 tolerated(0.14) probably_damaging(0.999) TCGA-HU-A4GU-01 22 39908309 39908309 G A MIEF1 Missense_Mutation p.R132H 0.44 tolerated(0.35) benign(0.028) TCGA-HU-A4GU-01 22 40417800 40417800 G - FAM83F Frame_Shift_Del p.E431Rfs*40 0.21 TCGA-HU-A4GU-01 22 40803271 40803271 G T SGSM3 Missense_Mutation p.R436L 0.23 deleterious(0) probably_damaging(0.933) TCGA-HU-A4GU-01 22 41652736 41652736 G A RANGAP1 Silent p.R289R 0.17 TCGA-HU-A4GU-01 22 41980050 41980050 G A PMM1 Silent p.I129I 0.17 TCGA-HU-A4GU-01 22 42525908 42525908 G A CYP2D6 Missense_Mutation p.R62W 0.21 deleterious(0.01) probably_damaging(0.985) TCGA-HU-A4GU-01 22 43231437 43231437 A G ARFGAP3 Silent p.R108R 0.11 TCGA-HU-A4GU-01 22 44368179 44368179 C T SAMM50 Missense_Mutation p.T129M 0.16 deleterious(0.01) possibly_damaging(0.475) TCGA-HU-A4GU-01 22 45970457 45970457 C T FBLN1 Silent p.C588C 0.19 TCGA-HU-A4GU-01 22 46654556 46654556 T C PKDREJ Missense_Mutation p.H1555R 0.24 tolerated(0.42) benign(0) TCGA-HU-A4GU-01 22 46724706 46724706 G A GTSE1 Missense_Mutation p.D616N 0.20 deleterious(0.01) probably_damaging(0.976) TCGA-HU-A4GU-01 22 46773146 46773146 G A CELSR1 Silent p.L2466L 0.15 TCGA-HU-A4GU-01 22 46805670 46805670 C T CELSR1 Missense_Mutation p.G1681R 0.55 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GU-01 22 49103583 49103583 A G FAM19A5 Missense_Mutation p.E106G 0.07 deleterious(0) probably_damaging(1) TCGA-HU-A4GU-01 22 50192336 50192336 T G BRD1 Splice_Site p.X553_splice 0.17 TCGA-HU-A4GU-01 22 50615855 50615855 C T PANX2 Silent p.S238S 0.45 TCGA-HU-A4GU-01 22 50649302 50649302 C T SELO Missense_Mutation p.A438V 0.10 tolerated(0.29) benign(0.026) TCGA-HU-A4GU-01 22 50657578 50657578 C T TUBGCP6 Silent p.A1515A 0.41 TCGA-HU-A4GU-01 22 50658670 50658670 C A TUBGCP6 Intron 0.16 TCGA-HU-A4GU-01 22 50659740 50659740 C A TUBGCP6 Missense_Mutation p.E1016D 0.17 tolerated(0.2) benign(0.011) TCGA-HU-A4GU-01 22 50728019 50728019 G - PLXNB2 Frame_Shift_Del p.T332Kfs*59 0.17 TCGA-HU-A4GU-01 22 50988099 50988099 C T KLHDC7B Missense_Mutation p.R502W 0.20 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GU-01 22 51065640 51065641 - G ARSA Frame_Shift_Ins p.H140Pfs*36 0.33 TCGA-HU-A4GU-01 22 51237600 51237600 A - RPL23AP82 RNA 0.12 TCGA-HU-A4GU-01 2 105713760 105713760 C T MRPS9 Silent p.D359D 0.07 TCGA-HU-A4GU-01 2 105858511 105858511 C T GPR45 Missense_Mutation p.R66C 0.29 deleterious(0) probably_damaging(1) TCGA-HU-A4GU-01 2 105859442 105859442 G - GPR45 3'UTR 0.22 TCGA-HU-A4GU-01 2 107050812 107050812 C T RGPD3 Missense_Mutation p.E693K 0.29 tolerated(0.06) benign(0.262) TCGA-HU-A4GU-01 2 10929969 10929969 G T PDIA6 Missense_Mutation p.P249H 0.11 deleterious(0.01) probably_damaging(0.947) TCGA-HU-A4GU-01 2 109513587 109513587 G A EDAR Missense_Mutation p.R375C 0.26 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GU-01 2 112545863 112545863 C T ANAPC1 Missense_Mutation p.A1583T 0.12 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GU-01 2 112847268 112847268 T G TMEM87B Silent p.A335A 0.28 TCGA-HU-A4GU-01 2 113539199 113539199 C T IL1A Missense_Mutation p.A101T 0.27 tolerated(0.48) benign(0.001) TCGA-HU-A4GU-01 2 114257989 114257989 C T FOXD4L1 Missense_Mutation p.R386C 0.06 tolerated_low_confidence(0.41) benign(0.002) TCGA-HU-A4GU-01 2 11750894 11750894 G A GREB1 Missense_Mutation p.G916D 0.17 tolerated(0.08) probably_damaging(1) TCGA-HU-A4GU-01 2 11759017 11759017 G A GREB1 Missense_Mutation p.R1339H 0.50 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GU-01 2 125504877 125504877 G A CNTNAP5 Missense_Mutation p.G716R 0.36 deleterious(0.01) benign(0.12) TCGA-HU-A4GU-01 2 128079649 128079649 C T MAP3K2 Missense_Mutation p.V340I 0.14 tolerated(0.05) benign(0.275) TCGA-HU-A4GU-01 2 128238676 128238676 T - IWS1 Frame_Shift_Del p.S802Afs*7 0.28 TCGA-HU-A4GU-01 2 128398501 128398501 G T LIMS2 Silent p.G265G 0.32 TCGA-HU-A4GU-01 2 130902278 130902278 C T CCDC74B Intron 0.29 TCGA-HU-A4GU-01 2 132021845 132021845 C A POTEE Missense_Mutation p.S939R 0.19 deleterious_low_confidence(0.02) probably_damaging(0.98) TCGA-HU-A4GU-01 2 132277231 132277231 C T AC093838.4 RNA 0.43 TCGA-HU-A4GU-01 2 135620998 135620998 C A ACMSD Missense_Mutation p.L95I 0.41 tolerated(0.54) benign(0.003) TCGA-HU-A4GU-01 2 136480084 136480084 A - R3HDM1 Frame_Shift_Del p.A971Lfs*26 0.33 TCGA-HU-A4GU-01 2 136570016 136570016 A G LCT Missense_Mutation p.S740P 0.26 deleterious(0.03) probably_damaging(0.945) TCGA-HU-A4GU-01 2 137988667 137988667 T C THSD7B Missense_Mutation p.S593P 0.24 tolerated(0.18) benign(0.136) TCGA-HU-A4GU-01 2 141108494 141108494 T G LRP1B Silent p.R3922R 0.31 TCGA-HU-A4GU-01 2 141202174 141202174 C A LRP1B Nonsense_Mutation p.G3378* 0.30 TCGA-HU-A4GU-01 2 141259341 141259341 T G LRP1B Missense_Mutation p.E2922A 0.32 possibly_damaging(0.621) TCGA-HU-A4GU-01 2 141747221 141747221 G T LRP1B Missense_Mutation p.H884N 0.42 possibly_damaging(0.785) TCGA-HU-A4GU-01 2 145156636 145156636 T C ZEB2 Silent p.P706P 0.47 TCGA-HU-A4GU-01 2 151326681 151326681 G A RND3 Silent p.S185S 0.30 TCGA-HU-A4GU-01 2 152482152 152482152 G A NEB Missense_Mutation p.R3450C 0.48 probably_damaging(0.959) TCGA-HU-A4GU-01 2 152522696 152522696 C T NEB Missense_Mutation p.A1647T 0.34 benign(0.003) TCGA-HU-A4GU-01 2 152539212 152539212 C A NEB Missense_Mutation p.M969I 0.32 benign(0.011) TCGA-HU-A4GU-01 2 157439405 157439405 T C GPD2 Missense_Mutation p.V720A 0.39 deleterious(0) possibly_damaging(0.847) TCGA-HU-A4GU-01 2 159077217 159077217 T - CCDC148 Frame_Shift_Del p.K420Nfs*15 0.38 TCGA-HU-A4GU-01 2 160035080 160035080 C T TANC1 Missense_Mutation p.A639V 0.44 tolerated(0.29) benign(0.069) TCGA-HU-A4GU-01 2 1652162 1652162 C T PXDN Silent p.V1130V 0.25 TCGA-HU-A4GU-01 2 1652753 1652753 G A PXDN Silent p.R933R 0.62 TCGA-HU-A4GU-01 2 165586543 165586543 C A COBLL1 Missense_Mutation p.A105S 0.07 tolerated(0.07) possibly_damaging(0.842) TCGA-HU-A4GU-01 2 166535748 166535748 G A CSRNP3 Missense_Mutation p.G415S 0.37 tolerated(0.5) benign(0.191) TCGA-HU-A4GU-01 2 166905432 166905432 A - SCN1A Frame_Shift_Del p.L331* 0.29 TCGA-HU-A4GU-01 2 166909417 166909417 C T SCN1A Silent p.S213S 0.23 TCGA-HU-A4GU-01 2 168102667 168102667 A C XIRP2 Missense_Mutation p.N1589H 0.38 possibly_damaging(0.519) TCGA-HU-A4GU-01 2 170493811 170493811 G T PPIG Missense_Mutation p.K681N 0.33 deleterious_low_confidence(0.04) unknown(0) TCGA-HU-A4GU-01 2 175436932 175436932 G A WIPF1 Missense_Mutation p.R201W 0.35 deleterious(0) probably_damaging(0.993) TCGA-HU-A4GU-01 2 177134392 177134392 T C MTX2 Missense_Mutation p.I12T 0.59 tolerated(0.19) benign(0.008) TCGA-HU-A4GU-01 2 178080769 178080769 G T HNRNPA3 Missense_Mutation p.D136Y 0.25 deleterious(0.01) probably_damaging(1) TCGA-HU-A4GU-01 2 178936666 178936667 - G PDE11A Frame_Shift_Ins p.T167Hfs*34 0.31 TCGA-HU-A4GU-01 2 179296888 179296888 T G PRKRA Missense_Mutation p.N293T 0.25 tolerated(0.06) benign(0.206) TCGA-HU-A4GU-01 2 179471853 179471853 C A TTN Missense_Mutation p.G17826C 0.31 TCGA-HU-A4GU-01 2 179546140 179546140 C T TTN Silent p.V11070V 0.29 TCGA-HU-A4GU-01 2 179591924 179591924 G T TTN Missense_Mutation p.A6723D 0.06 TCGA-HU-A4GU-01 2 179611032 179611032 T G TTN Intron 0.10 TCGA-HU-A4GU-01 2 182323028 182323028 C T ITGA4 Silent p.C101C 0.29 TCGA-HU-A4GU-01 2 182784139 182784139 G A SSFA2 Missense_Mutation p.R1037H 0.37 tolerated(1) benign(0.008) TCGA-HU-A4GU-01 2 186689209 186689209 T A FSIP2 Splice_Site p.X6914_splice 0.30 TCGA-HU-A4GU-01 2 189599261 189599261 A - DIRC1 3'UTR 0.35 TCGA-HU-A4GU-01 2 189917496 189917496 A G COL5A2 Silent p.G898G 0.33 TCGA-HU-A4GU-01 2 202496851 202496851 G T TMEM237 Missense_Mutation p.T159N 0.40 tolerated(0.11) benign(0.003) TCGA-HU-A4GU-01 2 206610590 206610590 G A NRP2 Missense_Mutation p.E588K 0.23 deleterious(0) probably_damaging(0.962) TCGA-HU-A4GU-01 2 207041592 207041592 A - GPR1 Frame_Shift_Del p.F127Sfs*2 0.26 TCGA-HU-A4GU-01 2 207482380 207482380 G T ADAM23 3'UTR 0.25 TCGA-HU-A4GU-01 2 207619965 207619965 C A MDH1B Missense_Mutation p.E226D 0.27 tolerated(0.14) benign(0.17) TCGA-HU-A4GU-01 2 209028137 209028137 G A CRYGA Missense_Mutation p.R15C 0.25 deleterious(0.01) probably_damaging(0.979) TCGA-HU-A4GU-01 2 21237354 21237354 C A APOB Missense_Mutation p.D1270Y 0.31 benign(0.003) TCGA-HU-A4GU-01 2 216197139 216197139 C T ATIC Silent p.C241C 0.27 TCGA-HU-A4GU-01 2 218925186 218925186 T G CXCR2P1 RNA 0.29 TCGA-HU-A4GU-01 2 219269248 219269248 G A CTDSP1 3'UTR 0.24 TCGA-HU-A4GU-01 2 219299403 219299403 C T VIL1 Missense_Mutation p.S552F 0.05 deleterious(0.01) possibly_damaging(0.746) TCGA-HU-A4GU-01 2 219746928 219746928 C T WNT10A Silent p.P53P 0.25 TCGA-HU-A4GU-01 2 220111501 220111501 G A STK16 Missense_Mutation p.R70H 0.36 tolerated(0.13) benign(0.005) TCGA-HU-A4GU-01 2 220286144 220286144 G A DES Missense_Mutation p.R369H 0.19 tolerated(0.2) benign(0.413) TCGA-HU-A4GU-01 2 222290845 222290845 C T EPHA4 Missense_Mutation p.G955D 0.26 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GU-01 2 227773576 227773576 T C RHBDD1 Missense_Mutation p.Y232H 0.07 tolerated(0.43) benign(0.002) TCGA-HU-A4GU-01 2 228881852 228881852 G A SPHKAP Missense_Mutation p.P1240S 0.25 deleterious(0) probably_damaging(1) TCGA-HU-A4GU-01 2 231368993 231368993 C T SP100 Nonsense_Mutation p.R620* 0.20 TCGA-HU-A4GU-01 2 234240339 234240339 G A SAG Missense_Mutation p.V263M 0.20 deleterious(0) probably_damaging(1) TCGA-HU-A4GU-01 2 234676936 234676936 C T UGT1A10 Silent p.G382G 0.28 TCGA-HU-A4GU-01 2 235951518 235951518 G A SH3BP4 Nonsense_Mutation p.W702* 0.33 TCGA-HU-A4GU-01 2 236957795 236957795 C T AGAP1 Nonsense_Mutation p.R662* 0.25 TCGA-HU-A4GU-01 2 24042724 24042724 A G ATAD2B Silent p.S720S 0.30 TCGA-HU-A4GU-01 2 242062279 242062279 G - PASK Frame_Shift_Del p.K981Rfs*22 0.19 TCGA-HU-A4GU-01 2 242139594 242139594 C - ANO7 Frame_Shift_Del p.E226Sfs*9 0.23 TCGA-HU-A4GU-01 2 242169080 242169080 T C HDLBP Missense_Mutation p.E1248G 0.04 deleterious(0.01) benign(0.342) TCGA-HU-A4GU-01 2 242195733 242195733 C T HDLBP Missense_Mutation p.E247K 0.23 tolerated(0.6) benign(0.007) TCGA-HU-A4GU-01 2 242742942 242742942 C T GAL3ST2 Silent p.N186N 0.18 TCGA-HU-A4GU-01 2 24406406 24406406 C T FAM228A Missense_Mutation p.A98V 0.21 tolerated(0.07) possibly_damaging(0.84) TCGA-HU-A4GU-01 2 24929665 24929665 A C NCOA1 Silent p.G442G 0.22 TCGA-HU-A4GU-01 2 25043704 25043704 G A ADCY3 Silent p.G1047G 0.21 TCGA-HU-A4GU-01 2 25047330 25047330 G A ADCY3 Nonsense_Mutation p.R885* 0.27 TCGA-HU-A4GU-01 2 26427022 26427022 C T HADHA Missense_Mutation p.A377T 0.26 deleterious(0.03) probably_damaging(0.941) TCGA-HU-A4GU-01 2 26502871 26502871 C T HADHB Missense_Mutation p.T274I 0.22 tolerated(0.46) benign(0.005) TCGA-HU-A4GU-01 2 26915809 26915809 C T KCNK3 Silent p.G22G 0.27 TCGA-HU-A4GU-01 2 27276775 27276775 G A AGBL5 Silent p.T133T 0.24 TCGA-HU-A4GU-01 2 27282224 27282224 G T AGBL5 Missense_Mutation p.G681C 0.04 deleterious_low_confidence(0.01) possibly_damaging(0.67) TCGA-HU-A4GU-01 2 27461041 27461041 G A CAD Missense_Mutation p.A1616T 0.19 tolerated(0.43) possibly_damaging(0.904) TCGA-HU-A4GU-01 2 29450527 29450527 C T ALK Missense_Mutation p.A943T 0.25 deleterious(0.02) probably_damaging(0.993) TCGA-HU-A4GU-01 2 31598263 31598263 G T XDH Missense_Mutation p.Q529K 0.09 tolerated(1) benign(0) TCGA-HU-A4GU-01 2 32289087 32289087 C T SPAST Silent p.L63L 0.22 TCGA-HU-A4GU-01 2 32449667 32449667 C T NLRC4 Missense_Mutation p.V984I 0.23 tolerated(0.27) benign(0.206) TCGA-HU-A4GU-01 2 32626306 32626306 C A BIRC6 Silent p.V370V 0.17 TCGA-HU-A4GU-01 2 33525616 33525616 T C LTBP1 Missense_Mutation p.S1112P 0.26 deleterious(0) probably_damaging(0.985) TCGA-HU-A4GU-01 2 3691529 3691529 G A COLEC11 Missense_Mutation p.A227T 0.23 tolerated(0.62) benign(0.005) TCGA-HU-A4GU-01 2 3691760 3691760 G A COLEC11 3'UTR 0.19 TCGA-HU-A4GU-01 2 37208749 37208749 G A HEATR5B Missense_Mutation p.R2034C 0.25 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GU-01 2 43801624 43801624 A C THADA Missense_Mutation p.V527G 0.24 deleterious(0) possibly_damaging(0.797) TCGA-HU-A4GU-01 2 44049989 44049989 G A ABCG5 Silent p.H470H 0.23 TCGA-HU-A4GU-01 2 44099210 44099210 C T ABCG8 Missense_Mutation p.R354C 0.17 tolerated(0.11) benign(0.014) TCGA-HU-A4GU-01 2 44556113 44556113 C A PREPL Missense_Mutation p.V498L 0.17 tolerated(0.88) benign(0.006) TCGA-HU-A4GU-01 2 45169339 45169339 C T SIX3 Silent p.S32S 0.40 TCGA-HU-A4GU-01 2 45169645 45169645 G A SIX3 Silent p.A134A 0.17 TCGA-HU-A4GU-01 2 45235938 45235938 G A SIX2 Silent p.G104G 0.16 TCGA-HU-A4GU-01 2 45826841 45826841 T - SRBD1 Frame_Shift_Del p.K132Sfs*2 0.23 TCGA-HU-A4GU-01 2 50170851 50170851 C A NRXN1 Missense_Mutation p.G1443C 0.07 deleterious(0) probably_damaging(0.978) TCGA-HU-A4GU-01 2 54175584 54175585 CT - PSME4 Frame_Shift_Del p.E158Afs*9 0.17 TCGA-HU-A4GU-01 2 60687749 60687749 G A BCL11A Silent p.G766G 0.44 TCGA-HU-A4GU-01 2 60688714 60688714 C T BCL11A Missense_Mutation p.A445T 0.21 tolerated(0.56) possibly_damaging(0.499) TCGA-HU-A4GU-01 2 63206358 63206358 G A EHBP1 Silent p.E867E 0.51 TCGA-HU-A4GU-01 2 65482777 65482777 G A ACTR2 Silent p.E233E 0.22 TCGA-HU-A4GU-01 2 65559175 65559175 C T SPRED2 Silent p.T128T 0.30 TCGA-HU-A4GU-01 2 67631124 67631124 G T ETAA1 Missense_Mutation p.R437M 0.28 deleterious(0.01) possibly_damaging(0.81) TCGA-HU-A4GU-01 2 68882419 68882419 C T PROKR1 Missense_Mutation p.A298V 0.12 deleterious(0.03) benign(0.103) TCGA-HU-A4GU-01 2 69409751 69409751 C T ANTXR1 Missense_Mutation p.R438C 0.24 tolerated(0.07) probably_damaging(0.953) TCGA-HU-A4GU-01 2 69472360 69472360 C T ANTXR1 Missense_Mutation p.R480C 0.18 deleterious(0.01) probably_damaging(0.977) TCGA-HU-A4GU-01 2 71060989 71060989 T C CD207 Missense_Mutation p.Y118C 0.10 tolerated(0.16) benign(0.312) TCGA-HU-A4GU-01 2 71631033 71631033 T G ZNF638 Missense_Mutation p.S955A 0.28 tolerated(0.14) probably_damaging(0.941) TCGA-HU-A4GU-01 2 71891503 71891503 C T DYSF Silent p.V1703V 0.11 TCGA-HU-A4GU-01 2 73052953 73052953 G A EXOC6B Silent p.D29D 0.10 TCGA-HU-A4GU-01 2 73476983 73476983 C A CCT7 Missense_Mutation p.L337M 0.25 tolerated(0.05) benign(0.34) TCGA-HU-A4GU-01 2 73518762 73518762 G A EGR4 Silent p.H531H 0.22 TCGA-HU-A4GU-01 2 74089388 74089388 C T STAMBP 3'UTR 0.17 TCGA-HU-A4GU-01 2 74327960 74327960 G A TET3 Missense_Mutation p.A1214T 0.32 tolerated(1) benign(0.002) TCGA-HU-A4GU-01 2 74596537 74596537 C A DCTN1 Missense_Mutation p.A492S 0.35 tolerated(0.54) benign(0.049) TCGA-HU-A4GU-01 2 74689868 74689868 G A MOGS Missense_Mutation p.P350S 0.27 tolerated(0.23) benign(0) TCGA-HU-A4GU-01 2 74746315 74746315 T G DQX1 Missense_Mutation p.T617P 0.26 deleterious(0) probably_damaging(1) TCGA-HU-A4GU-01 2 77746550 77746550 G A LRRTM4 Nonsense_Mutation p.Q149* 0.24 TCGA-HU-A4GU-01 2 86255759 86255759 G A POLR1A Missense_Mutation p.R1619W 0.20 deleterious(0) probably_damaging(0.992) TCGA-HU-A4GU-01 2 86335644 86335645 - A PTCD3 Frame_Shift_Ins p.K63Efs*5 0.18 TCGA-HU-A4GU-01 2 89986369 89986369 G T IGKV2D-29 Missense_Mutation p.Q6H 0.21 tolerated(0.06) benign(0.168) TCGA-HU-A4GU-01 2 90193275 90193275 C A IGKV1D-13 Missense_Mutation p.L68I 0.16 deleterious(0.01) benign(0.245) TCGA-HU-A4GU-01 2 9547672 9547672 T C ITGB1BP1 Missense_Mutation p.D146G 0.20 deleterious(0.01) probably_damaging(0.993) TCGA-HU-A4GU-01 2 95513843 95513843 A T RNU6-1320P 5'Flank 0.18 TCGA-HU-A4GU-01 2 96801118 96801118 A C ASTL Missense_Mutation p.F72C 0.16 deleterious(0) probably_damaging(0.99) TCGA-HU-A4GU-01 2 96945221 96945221 G A SNRNP200 Missense_Mutation p.R1701C 0.18 deleterious(0.01) possibly_damaging(0.586) TCGA-HU-A4GU-01 2 96956165 96956165 A G SNRNP200 Missense_Mutation p.S881P 0.27 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GU-01 2 97268532 97268532 G T KANSL3 Silent p.T739T 0.22 TCGA-HU-A4GU-01 2 97285224 97285224 G A KANSL3 Missense_Mutation p.R179W 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-HU-A4GU-01 2 98409946 98409946 G A TMEM131 Missense_Mutation p.R1153W 0.09 deleterious(0) probably_damaging(0.977) TCGA-HU-A4GU-01 2 98914470 98914470 C T VWA3B Silent p.G1086G 0.25 TCGA-HU-A4GU-01 2 99936110 99936110 A - TXNDC9 3'UTR 0.31 TCGA-HU-A4GU-01 3 100951720 100951720 T G IMPG2 Missense_Mutation p.E1046D 0.35 tolerated(1) benign(0.002) TCGA-HU-A4GU-01 3 10401790 10401790 G A ATP2B2 Silent p.G559G 0.72 TCGA-HU-A4GU-01 3 108248155 108248155 T C MYH15 5'UTR 0.26 TCGA-HU-A4GU-01 3 108405322 108405322 C T DZIP3 Missense_Mutation p.P1014S 0.37 tolerated(0.08) benign(0.035) TCGA-HU-A4GU-01 3 112358362 112358362 G A CCDC80 Missense_Mutation p.R131C 0.38 deleterious(0) possibly_damaging(0.876) TCGA-HU-A4GU-01 3 114069396 114069396 G A ZBTB20 Missense_Mutation p.A510V 0.23 tolerated(0.06) benign(0.046) TCGA-HU-A4GU-01 3 118649028 118649028 G A IGSF11 Silent p.S49S 0.35 TCGA-HU-A4GU-01 3 119134425 119134425 C T ARHGAP31 Missense_Mutation p.P1217S 0.46 deleterious(0.04) probably_damaging(0.999) TCGA-HU-A4GU-01 3 119165880 119165880 A G TMEM39A Missense_Mutation p.L187P 0.18 deleterious(0) probably_damaging(0.995) TCGA-HU-A4GU-01 3 119325738 119325738 G T PLA1A Missense_Mutation p.G64V 0.34 deleterious(0) probably_damaging(0.995) TCGA-HU-A4GU-01 3 121410277 121410279 TCT - GOLGB1 In_Frame_Del p.E2645del 0.28 TCGA-HU-A4GU-01 3 122003039 122003039 G A CASR Silent p.A756A 0.33 TCGA-HU-A4GU-01 3 122003716 122003716 C T CASR Missense_Mutation p.T982M 0.08 deleterious_low_confidence(0.04) benign(0.118) TCGA-HU-A4GU-01 3 122641164 122641164 C T SEMA5B Missense_Mutation p.S522N 0.37 tolerated(0.96) benign(0.008) TCGA-HU-A4GU-01 3 124369721 124369721 G A KALRN Missense_Mutation p.A2T 0.12 tolerated_low_confidence(1) benign(0) TCGA-HU-A4GU-01 3 124746246 124746246 G A HEG1 Missense_Mutation p.A239V 0.33 tolerated_low_confidence(0.37) benign(0) TCGA-HU-A4GU-01 3 1262392 1262392 C A CNTN6 Missense_Mutation p.P26H 0.25 deleterious(0) probably_damaging(1) TCGA-HU-A4GU-01 3 126735456 126735456 C T PLXNA1 Silent p.N1037N 0.09 TCGA-HU-A4GU-01 3 126741057 126741057 G A PLXNA1 Missense_Mutation p.A1390T 0.15 deleterious(0) possibly_damaging(0.893) TCGA-HU-A4GU-01 3 127816207 127816207 C T RUVBL1 Missense_Mutation p.A318T 0.47 deleterious(0.03) possibly_damaging(0.54) TCGA-HU-A4GU-01 3 130400353 130400353 T G PIK3R4 Silent p.P1230P 0.11 TCGA-HU-A4GU-01 3 130452966 130452966 C A PIK3R4 Missense_Mutation p.Q292H 0.12 tolerated(0.49) benign(0.012) TCGA-HU-A4GU-01 3 132394093 132394093 T G UBA5 Missense_Mutation p.F272V 0.26 deleterious(0) benign(0.013) TCGA-HU-A4GU-01 3 133377884 133377884 G A TOPBP1 Silent p.G65G 0.70 TCGA-HU-A4GU-01 3 133485235 133485235 C A TF Missense_Mutation p.P482T 0.35 deleterious(0.01) probably_damaging(1) TCGA-HU-A4GU-01 3 133670083 133670083 A - SLCO2A1 Frame_Shift_Del p.F277Sfs*8 0.32 TCGA-HU-A4GU-01 3 13372108 13372108 C T NUP210 Missense_Mutation p.R1321H 0.08 deleterious(0.02) benign(0.022) TCGA-HU-A4GU-01 3 134078146 134078146 C T AMOTL2 Missense_Mutation p.A695T 0.38 tolerated(0.28) benign(0.006) TCGA-HU-A4GU-01 3 134880956 134880956 C T EPHB1 Missense_Mutation p.R507C 0.05 deleterious(0) benign(0.351) TCGA-HU-A4GU-01 3 13542247 13542247 C T HDAC11 Silent p.G149G 0.25 TCGA-HU-A4GU-01 3 136287655 136287655 C T STAG1 Missense_Mutation p.A116T 0.34 deleterious(0.01) benign(0.271) TCGA-HU-A4GU-01 3 138170891 138170891 T G ESYT3 Missense_Mutation p.I110S 0.19 deleterious(0) possibly_damaging(0.726) TCGA-HU-A4GU-01 3 138431111 138431111 A - PIK3CB Frame_Shift_Del p.F446Lfs*7 0.25 TCGA-HU-A4GU-01 3 141326548 141326548 A - RASA2 Frame_Shift_Del p.N656Tfs*21 0.22 TCGA-HU-A4GU-01 3 142741774 142741774 G A U2SURP Silent p.P366P 0.28 TCGA-HU-A4GU-01 3 15115947 15115947 C T ZFYVE20 Missense_Mutation p.R566H 0.36 tolerated_low_confidence(0.17) benign(0.001) TCGA-HU-A4GU-01 3 151165718 151165718 G A IGSF10 Missense_Mutation p.S684F 0.32 deleterious(0.03) benign(0.082) TCGA-HU-A4GU-01 3 154010429 154010429 C T DHX36 Silent p.T575T 0.38 TCGA-HU-A4GU-01 3 155198938 155198938 T - PLCH1 Frame_Shift_Del p.Y1634Sfs*6 0.09 TCGA-HU-A4GU-01 3 15529720 15529720 C T COLQ Missense_Mutation p.G105D 0.36 deleterious(0) unknown(0) TCGA-HU-A4GU-01 3 157815723 157815723 G T SHOX2 3'UTR 0.11 TCGA-HU-A4GU-01 3 164793707 164793707 C T SI Missense_Mutation p.A32T 0.33 deleterious(0.04) possibly_damaging(0.611) TCGA-HU-A4GU-01 3 165547369 165547369 T C BCHE Missense_Mutation p.T485A 0.68 deleterious(0) possibly_damaging(0.736) TCGA-HU-A4GU-01 3 167196720 167196720 T C WDR49 Silent p.K680K 0.48 TCGA-HU-A4GU-01 3 167759195 167759195 C T GOLIM4 Silent p.Q195Q 0.40 TCGA-HU-A4GU-01 3 169099149 169099149 G A MECOM Silent p.P91P 0.38 TCGA-HU-A4GU-01 3 173322476 173322476 A G NLGN1 Missense_Mutation p.T30A 0.29 tolerated_low_confidence(0.64) benign(0) TCGA-HU-A4GU-01 3 175520895 175520895 A C NAALADL2 Missense_Mutation p.E764D 0.27 tolerated(0.24) benign(0.008) TCGA-HU-A4GU-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.38 deleterious(0.02) probably_damaging(0.959) TCGA-HU-A4GU-01 3 180320724 180320725 - A TTC14 Frame_Shift_Ins p.A72Sfs*18 0.24 TCGA-HU-A4GU-01 3 182987793 182987793 G - B3GNT5 Frame_Shift_Del p.P71Lfs*6 0.28 TCGA-HU-A4GU-01 3 183493773 183493773 C T YEATS2 Silent p.G813G 0.33 TCGA-HU-A4GU-01 3 183703133 183703133 A G ABCC5 Intron 0.05 TCGA-HU-A4GU-01 3 183885375 183885375 C T DVL3 Silent p.D402D 0.08 TCGA-HU-A4GU-01 3 184039599 184039599 G A EIF4G1 Silent p.S416S 0.36 TCGA-HU-A4GU-01 3 185404892 185404892 G A IGF2BP2 Silent p.C255C 0.16 TCGA-HU-A4GU-01 3 189456514 189456514 G T TP63 Missense_Mutation p.S92I 0.28 tolerated(0.07) probably_damaging(0.979) TCGA-HU-A4GU-01 3 193130155 193130155 C T ATP13A4 Missense_Mutation p.C1007Y 0.33 deleterious(0.01) benign(0.059) TCGA-HU-A4GU-01 3 196736677 196736677 T C MFI2 Missense_Mutation p.D446G 0.36 tolerated(0.15) possibly_damaging(0.507) TCGA-HU-A4GU-01 3 196743103 196743103 A G MFI2 Silent p.H346H 0.31 TCGA-HU-A4GU-01 3 24169194 24169194 A G THRB Missense_Mutation p.S314P 0.05 deleterious(0.01) probably_damaging(0.989) TCGA-HU-A4GU-01 3 29781216 29781216 A T RBMS3 Missense_Mutation p.Q135H 0.69 deleterious(0) probably_damaging(0.991) TCGA-HU-A4GU-01 3 33618718 33618718 C A CLASP2 Intron 0.37 TCGA-HU-A4GU-01 3 37114286 37114286 T - LRRFIP2 Frame_Shift_Del p.I487Lfs*4 0.26 TCGA-HU-A4GU-01 3 38181461 38181461 G A MYD88 Silent p.A158A 0.17 TCGA-HU-A4GU-01 3 38592060 38592060 C T SCN5A Missense_Mutation p.G1935S 0.41 tolerated(0.15) benign(0.012) TCGA-HU-A4GU-01 3 39226157 39226157 C T XIRP1 Missense_Mutation p.A1594T 0.33 tolerated(0.07) possibly_damaging(0.669) TCGA-HU-A4GU-01 3 39227573 39227573 T G XIRP1 Silent p.R1122R 0.28 TCGA-HU-A4GU-01 3 39228162 39228162 G A XIRP1 Silent p.S925S 0.33 TCGA-HU-A4GU-01 3 440833 440833 T C CHL1 Splice_Site p.X1129_splice 0.14 TCGA-HU-A4GU-01 3 46306955 46306955 C T CCR3 Silent p.G123G 0.35 TCGA-HU-A4GU-01 3 47037219 47037219 C T NBEAL2 Silent p.S638S 0.16 TCGA-HU-A4GU-01 3 47046018 47046018 T C NBEAL2 Missense_Mutation p.Y2078H 0.42 deleterious(0) probably_damaging(1) TCGA-HU-A4GU-01 3 48602399 48602399 G A COL7A1 Missense_Mutation p.P2879S 0.37 possibly_damaging(0.495) TCGA-HU-A4GU-01 3 48612878 48612878 C - COL7A1 Frame_Shift_Del p.G2025Afs*181 0.12 TCGA-HU-A4GU-01 3 49213186 49213186 G T KLHDC8B Missense_Mutation p.Q339H 0.26 deleterious(0) probably_damaging(0.993) TCGA-HU-A4GU-01 3 49764749 49764749 G T IP6K1 Missense_Mutation p.P378T 0.41 tolerated(0.36) benign(0.028) TCGA-HU-A4GU-01 3 49899799 49899799 A G CAMKV Missense_Mutation p.L8P 0.38 deleterious(0.01) benign(0.035) TCGA-HU-A4GU-01 3 49936067 49936067 G A MST1R Missense_Mutation p.R535C 0.30 deleterious(0.01) possibly_damaging(0.88) TCGA-HU-A4GU-01 3 50223449 50223449 C T SEMA3F Missense_Mutation p.A572V 0.32 deleterious(0.01) benign(0.028) TCGA-HU-A4GU-01 3 50404836 50404836 G - CACNA2D2 Frame_Shift_Del p.P804Hfs*7 0.20 TCGA-HU-A4GU-01 3 51429820 51429820 G T RBM15B Missense_Mutation p.E330D 0.38 deleterious(0) benign(0.138) TCGA-HU-A4GU-01 3 51696643 51696644 - C RAD54L2 Frame_Shift_Ins p.A1207Gfs*17 0.24 TCGA-HU-A4GU-01 3 52011901 52011901 C A ABHD14A Silent p.T28T 0.06 TCGA-HU-A4GU-01 3 52554519 52554519 G A STAB1 Missense_Mutation p.G1868D 0.37 tolerated(0.54) benign(0.053) TCGA-HU-A4GU-01 3 54596848 54596848 T G CACNA2D3 Missense_Mutation p.V189G 0.41 deleterious(0) possibly_damaging(0.816) TCGA-HU-A4GU-01 3 57132349 57132349 A G IL17RD Missense_Mutation p.L461P 0.36 deleterious(0) probably_damaging(1) TCGA-HU-A4GU-01 3 57496515 57496515 A G DNAH12 Splice_Site p.X157_splice 0.27 TCGA-HU-A4GU-01 3 67058677 67058677 T A KBTBD8 Silent p.L558L 0.34 TCGA-HU-A4GU-01 3 8590439 8590439 C T LMCD1 Silent p.S191S 0.27 TCGA-HU-A4GU-01 3 9413197 9413197 G A THUMPD3 Missense_Mutation p.D262N 0.29 tolerated(0.1) possibly_damaging(0.846) TCGA-HU-A4GU-01 3 9426223 9426223 C T THUMPD3 Nonsense_Mutation p.R459* 0.38 TCGA-HU-A4GU-01 3 9512217 9512217 A C SETD5 Missense_Mutation p.R933S 0.29 tolerated(0.63) benign(0.231) TCGA-HU-A4GU-01 3 9776020 9776020 C T BRPF1 Missense_Mutation p.R66C 0.29 deleterious(0) probably_damaging(0.989) TCGA-HU-A4GU-01 3 9776030 9776030 G A BRPF1 Missense_Mutation p.R69H 0.30 tolerated(0.1) probably_damaging(0.996) TCGA-HU-A4GU-01 4 103644044 103644044 A G MANBA Missense_Mutation p.V178A 0.35 tolerated(0.22) benign(0.19) TCGA-HU-A4GU-01 4 110667481 110667481 T - CFI Frame_Shift_Del p.D443Ifs*49 0.32 TCGA-HU-A4GU-01 4 113199100 113199100 C A TIFA Missense_Mutation p.R158M 0.30 tolerated(0.1) benign(0.003) TCGA-HU-A4GU-01 4 119145777 119145777 G T NDST3 Silent p.L557L 0.36 TCGA-HU-A4GU-01 4 119810241 119810241 G - SYNPO2 Frame_Shift_Del p.F19Sfs*58 0.27 TCGA-HU-A4GU-01 4 120161049 120161049 C T USP53 Silent p.S45S 0.37 TCGA-HU-A4GU-01 4 120987858 120987858 A T MAD2L1 Missense_Mutation p.I11N 0.40 deleterious(0) probably_damaging(0.996) TCGA-HU-A4GU-01 4 126242670 126242670 G A FAT4 Missense_Mutation p.A1702T 0.31 benign(0.103) TCGA-HU-A4GU-01 4 126412700 126412700 C A FAT4 Missense_Mutation p.A4908E 0.40 benign(0.244) TCGA-HU-A4GU-01 4 129864248 129864248 T C SCLT1 Missense_Mutation p.Q512R 0.16 deleterious(0) benign(0.353) TCGA-HU-A4GU-01 4 13584277 13584277 T - BOD1L1 Frame_Shift_Del p.D2840Mfs*21 0.25 TCGA-HU-A4GU-01 4 142143532 142143532 A - ZNF330 Frame_Shift_Del p.K5Rfs*18 0.41 TCGA-HU-A4GU-01 4 146059018 146059018 C G OTUD4 Missense_Mutation p.R905T 0.06 tolerated(0.63) benign(0.004) TCGA-HU-A4GU-01 4 149356865 149356865 G A NR3C2 Missense_Mutation p.A383V 0.32 deleterious_low_confidence(0.04) possibly_damaging(0.739) TCGA-HU-A4GU-01 4 151504618 151504618 G T MAB21L2 Missense_Mutation p.R146L 0.35 tolerated(0.08) probably_damaging(0.929) TCGA-HU-A4GU-01 4 154335996 154335996 A G MND1 Missense_Mutation p.D202G 0.08 deleterious(0) probably_damaging(0.99) TCGA-HU-A4GU-01 4 155505924 155505924 C A FGA Missense_Mutation p.K651N 0.33 deleterious(0.02) possibly_damaging(0.871) TCGA-HU-A4GU-01 4 155720283 155720283 T C RBM46 Silent p.I323I 0.53 TCGA-HU-A4GU-01 4 15601258 15601259 - A CC2D2A Frame_Shift_Ins p.S1537Kfs*9 0.29 TCGA-HU-A4GU-01 4 15717330 15717330 T - BST1 Frame_Shift_Del p.F206Lfs*38 0.34 TCGA-HU-A4GU-01 4 158057767 158057767 A C GLRB Missense_Mutation p.E148D 0.33 deleterious(0) probably_damaging(0.994) TCGA-HU-A4GU-01 4 166300498 166300498 G A CPE Missense_Mutation p.R42Q 0.43 tolerated(0.15) benign(0.238) TCGA-HU-A4GU-01 4 170043298 170043298 T C SH3RF1 Silent p.G433G 0.09 TCGA-HU-A4GU-01 4 175598420 175598420 G A GLRA3 Nonsense_Mutation p.R246* 0.38 TCGA-HU-A4GU-01 4 17819570 17819570 T G NCAPG Missense_Mutation p.I326S 0.33 deleterious(0) benign(0.326) TCGA-HU-A4GU-01 4 183675596 183675596 T C TENM3 Missense_Mutation p.V1359A 0.56 deleterious(0) benign(0.001) TCGA-HU-A4GU-01 4 183714994 183714994 A G TENM3 Missense_Mutation p.N2390S 0.16 deleterious(0) possibly_damaging(0.636) TCGA-HU-A4GU-01 4 185018425 185018425 G A ENPP6 Missense_Mutation p.R364W 0.35 deleterious(0) probably_damaging(0.969) TCGA-HU-A4GU-01 4 185309784 185309784 T G IRF2 3'UTR 0.27 TCGA-HU-A4GU-01 4 186583366 186583366 C A SORBS2 Missense_Mutation p.G96C 0.32 tolerated(0.06) possibly_damaging(0.834) TCGA-HU-A4GU-01 4 187086608 187086608 G A FAM149A Missense_Mutation p.R385H 0.37 tolerated(0.06) benign(0.081) TCGA-HU-A4GU-01 4 187519138 187519138 T C FAT1 Missense_Mutation p.Y4082C 0.10 probably_damaging(0.926) TCGA-HU-A4GU-01 4 188924698 188924698 G A ZFP42 Missense_Mutation p.R246Q 0.18 tolerated(1) benign(0.001) TCGA-HU-A4GU-01 4 1976396 1976396 C T WHSC1 Intron 0.13 TCGA-HU-A4GU-01 4 2242355 2242355 G A HAUS3 Nonsense_Mutation p.Q107* 0.32 TCGA-HU-A4GU-01 4 26431568 26431568 G A RBPJ Missense_Mutation p.A326T 0.42 deleterious(0) probably_damaging(0.994) TCGA-HU-A4GU-01 4 40045402 40045402 G A RP11-333E13.4 RNA 0.23 TCGA-HU-A4GU-01 4 40440760 40440760 C A RBM47 Missense_Mutation p.G51W 0.50 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GU-01 4 41748270 41748270 C T PHOX2B Missense_Mutation p.A167T 0.35 tolerated(0.14) unknown(0) TCGA-HU-A4GU-01 4 4322608 4322608 G A ZBTB49 Silent p.T621T 0.35 TCGA-HU-A4GU-01 4 47938810 47938810 A G CNGA1 Silent p.S636S 0.29 TCGA-HU-A4GU-01 4 52895882 52895882 G A SGCB Nonsense_Mutation p.R131* 0.05 TCGA-HU-A4GU-01 4 54966568 54966568 G A GSX2 Silent p.A19A 0.17 TCGA-HU-A4GU-01 4 55146554 55146554 T C PDGFRA Missense_Mutation p.V743A 0.29 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GU-01 4 55602973 55602973 G A KIT Missense_Mutation p.A895T 0.25 deleterious(0) probably_damaging(0.99) TCGA-HU-A4GU-01 4 56763012 56763012 C T EXOC1 Missense_Mutation p.R695C 0.20 deleterious(0) probably_damaging(1) TCGA-HU-A4GU-01 4 57829539 57829539 C T NOA1 3'UTR 0.19 TCGA-HU-A4GU-01 4 5798849 5798849 C T EVC Missense_Mutation p.R663W 0.26 deleterious(0) probably_damaging(1) TCGA-HU-A4GU-01 4 6843924 6843924 C A KIAA0232 Missense_Mutation p.S121Y 0.09 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GU-01 4 68490787 68490787 G A UBA6 Silent p.D879D 0.06 TCGA-HU-A4GU-01 4 6864082 6864082 C A KIAA0232 Missense_Mutation p.S658Y 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-HU-A4GU-01 4 6864571 6864571 G A KIAA0232 Missense_Mutation p.S821N 0.31 deleterious(0.03) benign(0.22) TCGA-HU-A4GU-01 4 69696698 69696698 A - UGT2B10 3'UTR 0.44 TCGA-HU-A4GU-01 4 73161432 73161432 C T ADAMTS3 Missense_Mutation p.A888T 0.13 tolerated(0.55) benign(0.01) TCGA-HU-A4GU-01 4 73179443 73179443 T C ADAMTS3 Missense_Mutation p.T566A 0.42 deleterious(0) possibly_damaging(0.855) TCGA-HU-A4GU-01 4 74451071 74451071 A C RASSF6 Silent p.S163S 0.05 TCGA-HU-A4GU-01 4 75091091 75091091 A G MTHFD2L Missense_Mutation p.D262G 0.20 deleterious(0) probably_damaging(0.972) TCGA-HU-A4GU-01 4 7820825 7820825 A G AFAP1 Missense_Mutation p.V267A 0.31 deleterious(0.04) benign(0.017) TCGA-HU-A4GU-01 4 81967654 81967654 G T BMP3 Missense_Mutation p.R360M 0.32 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GU-01 4 82125916 82125916 C T PRKG2 Missense_Mutation p.A96T 0.37 tolerated(0.59) benign(0.001) TCGA-HU-A4GU-01 4 8242611 8242611 C T SH3TC1 Missense_Mutation p.R1314C 0.32 deleterious(0.03) probably_damaging(1) TCGA-HU-A4GU-01 4 88989190 88989190 C T PKD2 Silent p.G833G 0.58 TCGA-HU-A4GU-01 4 90857014 90857014 T C MMRN1 Missense_Mutation p.L728P 0.17 deleterious(0) probably_damaging(0.982) TCGA-HU-A4GU-01 4 9783755 9783755 G A DRD5 Silent p.P34P 0.43 TCGA-HU-A4GU-01 5 112175650 112175651 - A APC Frame_Shift_Ins p.N1455Kfs*2 0.46 TCGA-HU-A4GU-01 5 112203163 112203163 A C SRP19 Missense_Mutation p.T122P 0.34 tolerated(0.44) benign(0.04) TCGA-HU-A4GU-01 5 112406880 112406880 C A MCC Missense_Mutation p.E612D 0.35 tolerated(0.22) benign(0.013) TCGA-HU-A4GU-01 5 118560435 118560435 G T DMXL1 Missense_Mutation p.R2749I 0.31 deleterious(0) benign(0.314) TCGA-HU-A4GU-01 5 118842530 118842530 G A HSD17B4 Missense_Mutation p.A452T 0.30 tolerated(0.23) benign(0.038) TCGA-HU-A4GU-01 5 122281825 122281825 C T SNX24 Nonsense_Mutation p.R74* 0.35 TCGA-HU-A4GU-01 5 126770487 126770487 G A MEGF10 Missense_Mutation p.G650D 0.35 deleterious(0) probably_damaging(1) TCGA-HU-A4GU-01 5 127704974 127704974 G A FBN2 Missense_Mutation p.R717C 0.33 deleterious(0) possibly_damaging(0.458) TCGA-HU-A4GU-01 5 132161101 132161101 A G SHROOM1 Silent p.G244G 0.36 TCGA-HU-A4GU-01 5 133328039 133328039 G A VDAC1 Silent p.G25G 0.28 TCGA-HU-A4GU-01 5 133494060 133494060 T C SKP1 Intron 0.24 TCGA-HU-A4GU-01 5 134364715 134364715 G T PITX1 Silent p.A233A 0.06 TCGA-HU-A4GU-01 5 139941338 139941338 C A APBB3 Intron 0.19 TCGA-HU-A4GU-01 5 140165992 140165992 C A PCDHA1 Silent p.A39A 0.22 TCGA-HU-A4GU-01 5 140167380 140167380 G A PCDHA1 Missense_Mutation p.R502H 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.619) TCGA-HU-A4GU-01 5 140229448 140229448 G A PCDHA9 Silent p.A456A 0.31 TCGA-HU-A4GU-01 5 140256412 140256412 C T PCDHA12 Missense_Mutation p.A452V 0.26 deleterious_low_confidence(0.02) benign(0.224) TCGA-HU-A4GU-01 5 140257112 140257112 C T PCDHA12 Silent p.G685G 0.22 TCGA-HU-A4GU-01 5 140263877 140263877 C T PCDHA13 Missense_Mutation p.A675V 0.20 tolerated_low_confidence(0.12) benign(0.002) TCGA-HU-A4GU-01 5 140502247 140502247 G A PCDHB4 Missense_Mutation p.G223S 0.17 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-HU-A4GU-01 5 140503476 140503476 C T PCDHB4 Silent p.R632R 0.22 TCGA-HU-A4GU-01 5 140531428 140531428 C T PCDHB6 Silent p.G530G 0.05 TCGA-HU-A4GU-01 5 140554058 140554058 C T PCDHB7 Missense_Mutation p.R548C 0.15 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-HU-A4GU-01 5 140563557 140563557 G A PCDHB16 Missense_Mutation p.A475T 0.07 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-HU-A4GU-01 5 140589394 140589394 A G PCDHB12 Silent p.A305A 0.28 TCGA-HU-A4GU-01 5 140720904 140720905 - T PCDHGA2 Frame_Shift_Ins p.L791Ffs*44 0.11 TCGA-HU-A4GU-01 5 140725577 140725577 G A PCDHGA3 Silent p.T659T 0.26 TCGA-HU-A4GU-01 5 140734936 140734936 C T PCDHGA4 Missense_Mutation p.R57W 0.22 tolerated_low_confidence(0.22) benign(0.024) TCGA-HU-A4GU-01 5 140746034 140746034 G A PCDHGA5 Missense_Mutation p.V713M 0.26 deleterious_low_confidence(0) benign(0.043) TCGA-HU-A4GU-01 5 140752045 140752045 C T PCDHGB3 Missense_Mutation p.A695V 0.35 deleterious(0) probably_damaging(0.994) TCGA-HU-A4GU-01 5 140763070 140763070 C T PCDHGA7 Missense_Mutation p.R202W 0.31 deleterious_low_confidence(0) probably_damaging(1) TCGA-HU-A4GU-01 5 140793318 140793318 C T PCDHGA10 Silent p.G192G 0.38 TCGA-HU-A4GU-01 5 140802457 140802457 G A PCDHGA11 Missense_Mutation p.D555N 0.24 deleterious_low_confidence(0) probably_damaging(1) TCGA-HU-A4GU-01 5 140857132 140857132 C - PCDHGC3 Frame_Shift_Del p.D485Tfs*21 0.25 TCGA-HU-A4GU-01 5 140866670 140866670 G A PCDHGC4 Missense_Mutation p.V644I 0.25 tolerated(0.14) possibly_damaging(0.759) TCGA-HU-A4GU-01 5 141335926 141335926 G C PCDH12 Nonsense_Mutation p.Y497* 0.25 TCGA-HU-A4GU-01 5 141336951 141336951 G - PCDH12 Frame_Shift_Del p.L156Wfs*42 0.24 TCGA-HU-A4GU-01 5 1416275 1416275 G A SLC6A3 Silent p.G323G 0.14 TCGA-HU-A4GU-01 5 1432617 1432617 G A SLC6A3 Silent p.N205N 0.19 TCGA-HU-A4GU-01 5 14462945 14462945 G T TRIO Missense_Mutation p.G1860C 0.30 benign(0.097) TCGA-HU-A4GU-01 5 145465117 145465117 G A PLAC8L1 Silent p.I100I 0.16 TCGA-HU-A4GU-01 5 145651091 145651091 T C RBM27 Missense_Mutation p.S948P 0.25 tolerated(0.24) benign(0.002) TCGA-HU-A4GU-01 5 149511617 149511617 C T PDGFRB Missense_Mutation p.E390K 0.26 deleterious(0.01) benign(0.348) TCGA-HU-A4GU-01 5 149927859 149927859 C T NDST1 Missense_Mutation p.S742L 0.17 tolerated(0.33) benign(0.001) TCGA-HU-A4GU-01 5 150090922 150090922 A G DCTN4 Missense_Mutation p.I398T 0.40 deleterious(0.01) benign(0.014) TCGA-HU-A4GU-01 5 150275714 150275716 AGA - ZNF300 In_Frame_Del p.F378del 0.19 TCGA-HU-A4GU-01 5 153766086 153766086 G T GALNT10 Intron 0.21 TCGA-HU-A4GU-01 5 156649962 156649962 C T ITK Silent p.N195N 0.22 TCGA-HU-A4GU-01 5 159344849 159344849 G T ADRA1B Missense_Mutation p.A313S 0.08 deleterious(0) possibly_damaging(0.572) TCGA-HU-A4GU-01 5 159707555 159707555 G A CCNJL Missense_Mutation p.A86V 0.28 deleterious(0) probably_damaging(0.99) TCGA-HU-A4GU-01 5 159854859 159854859 C T PTTG1 Missense_Mutation p.P170S 0.23 tolerated(0.21) benign(0.072) TCGA-HU-A4GU-01 5 164028161 164028161 G A CTC-340A15.2 RNA 0.36 TCGA-HU-A4GU-01 5 167987905 167987905 G A PANK3 Intron 0.07 TCGA-HU-A4GU-01 5 168244398 168244398 G A SLIT3 Missense_Mutation p.R234W 0.27 deleterious(0.02) probably_damaging(0.958) TCGA-HU-A4GU-01 5 170147330 170147330 C T KCNIP1 Silent p.C75C 0.13 TCGA-HU-A4GU-01 5 171482726 171482726 G A STK10 Missense_Mutation p.R798W 0.23 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GU-01 5 171509350 171509350 G A STK10 Missense_Mutation p.L657F 0.04 deleterious(0.02) probably_damaging(0.998) TCGA-HU-A4GU-01 5 171765430 171765430 G A SH3PXD2B Silent p.S893S 0.15 TCGA-HU-A4GU-01 5 173317794 173317794 C T CPEB4 Missense_Mutation p.S353F 0.15 deleterious_low_confidence(0.01) benign(0.417) TCGA-HU-A4GU-01 5 175811294 175811294 A - NOP16 Intron 0.15 TCGA-HU-A4GU-01 5 176721713 176721713 A - NSD1 Frame_Shift_Del p.N2450Ifs*6 0.11 TCGA-HU-A4GU-01 5 176813055 176813055 G A SLC34A1 Silent p.E59E 0.16 TCGA-HU-A4GU-01 5 177031391 177031391 G A B4GALT7 Missense_Mutation p.A88T 0.18 tolerated(0.34) benign(0.008) TCGA-HU-A4GU-01 5 177634161 177634161 T G HNRNPAB Missense_Mutation p.F202V 0.16 deleterious(0) probably_damaging(0.979) TCGA-HU-A4GU-01 5 178373448 178373448 A G ZNF454 Missense_Mutation p.D41G 0.12 deleterious(0.01) possibly_damaging(0.724) TCGA-HU-A4GU-01 5 178581820 178581820 G A ADAMTS2 Silent p.G411G 0.11 TCGA-HU-A4GU-01 5 178585791 178585791 G A ADAMTS2 Silent p.G355G 0.13 TCGA-HU-A4GU-01 5 179290598 179290598 C T TBC1D9B Silent p.E1201E 0.18 TCGA-HU-A4GU-01 5 180048661 180048661 G A FLT4 Missense_Mutation p.A634V 0.23 tolerated(1) benign(0.103) TCGA-HU-A4GU-01 5 180582844 180582844 C A OR2V2 Missense_Mutation p.A301E 0.15 deleterious(0) possibly_damaging(0.78) TCGA-HU-A4GU-01 5 180622613 180622613 G A TRIM7 Silent p.G363G 0.13 TCGA-HU-A4GU-01 5 192310 192310 G A LRRC14B Silent p.V219V 0.39 TCGA-HU-A4GU-01 5 195302 195302 C T LRRC14B Missense_Mutation p.A460V 0.04 tolerated(0.21) benign(0.022) TCGA-HU-A4GU-01 5 2753429 2753429 C A C5orf38 Missense_Mutation p.L122M 0.19 deleterious_low_confidence(0) unknown(0) TCGA-HU-A4GU-01 5 31323340 31323340 C T CDH6 Silent p.Y766Y 0.30 TCGA-HU-A4GU-01 5 32074219 32074219 C T PDZD2 Missense_Mutation p.R1003C 0.25 tolerated(0.18) benign(0) TCGA-HU-A4GU-01 5 32091085 32091085 A G PDZD2 Missense_Mutation p.K2511E 0.04 deleterious(0) possibly_damaging(0.64) TCGA-HU-A4GU-01 5 33535021 33535021 T C ADAMTS12 Missense_Mutation p.D1508G 0.41 tolerated(0.2) benign(0.039) TCGA-HU-A4GU-01 5 33576948 33576948 G A ADAMTS12 Silent p.D1061D 0.25 TCGA-HU-A4GU-01 5 33614468 33614468 A C ADAMTS12 Missense_Mutation p.V801G 0.31 deleterious(0.02) possibly_damaging(0.809) TCGA-HU-A4GU-01 5 33649727 33649727 C A ADAMTS12 Missense_Mutation p.Q422H 0.39 deleterious(0) probably_damaging(0.987) TCGA-HU-A4GU-01 5 37142580 37142580 G A C5orf42 Missense_Mutation p.R2768C 0.15 tolerated(0.22) benign(0.002) TCGA-HU-A4GU-01 5 39341801 39341801 A T C9 Missense_Mutation p.F62Y 0.24 tolerated(0.37) possibly_damaging(0.524) TCGA-HU-A4GU-01 5 41070947 41070947 A C MROH2B Missense_Mutation p.L3R 0.26 tolerated_low_confidence(0.58) benign(0) TCGA-HU-A4GU-01 5 41176626 41176626 G A C6 Silent p.G373G 0.30 TCGA-HU-A4GU-01 5 41313608 41313608 C A PLCXD3 3'UTR 0.29 TCGA-HU-A4GU-01 5 50679529 50679529 A - ISL1 Frame_Shift_Del p.K11Nfs*3 0.29 TCGA-HU-A4GU-01 5 6602599 6602599 C T NSUN2 Missense_Mutation p.V658M 0.26 deleterious(0) probably_damaging(0.915) TCGA-HU-A4GU-01 5 67569823 67569823 C T PIK3R1 Nonsense_Mutation p.R162* 0.38 TCGA-HU-A4GU-01 5 68573020 68573021 - A CDK7 3'UTR 0.23 TCGA-HU-A4GU-01 5 71756809 71756809 G A ZNF366 Missense_Mutation p.T172M 0.33 tolerated_low_confidence(0.08) benign(0.293) TCGA-HU-A4GU-01 5 79355572 79355572 G A THBS4 Silent p.P277P 0.37 TCGA-HU-A4GU-01 5 90049480 90049480 A G GPR98 Silent p.V3737V 0.30 TCGA-HU-A4GU-01 5 90144541 90144541 C T GPR98 Missense_Mutation p.R5703C 0.30 possibly_damaging(0.876) TCGA-HU-A4GU-01 5 96086328 96086328 C T CAST Missense_Mutation p.A448V 0.39 tolerated(0.73) benign(0.012) TCGA-HU-A4GU-01 5 96244664 96244664 G A ERAP2 Splice_Site p.X671_splice 0.27 TCGA-HU-A4GU-01 5 98129042 98129042 C T RGMB Missense_Mutation p.A341V 0.50 tolerated(0.66) benign(0.175) TCGA-HU-A4GU-01 6 108723201 108723201 T A LACE1 Missense_Mutation p.D250E 0.30 deleterious(0.04) benign(0.226) TCGA-HU-A4GU-01 6 110550119 110550119 T - CDC40 Frame_Shift_Del p.F502Lfs*6 0.28 TCGA-HU-A4GU-01 6 112462098 112462098 A - LAMA4 Frame_Shift_Del p.L947* 0.26 TCGA-HU-A4GU-01 6 114181338 114181338 C T MARCKS Silent p.D194D 0.59 TCGA-HU-A4GU-01 6 11779023 11779023 C T ADTRP 5'UTR 0.44 TCGA-HU-A4GU-01 6 125269089 125269089 A G RP11-510H23.1 RNA 0.42 TCGA-HU-A4GU-01 6 132910413 132910413 T G TAAR5 Missense_Mutation p.D138A 0.28 deleterious(0.01) benign(0.024) TCGA-HU-A4GU-01 6 132910785 132910785 G A TAAR5 Missense_Mutation p.A14V 0.19 tolerated(0.68) benign(0.001) TCGA-HU-A4GU-01 6 135754280 135754280 G A AHI1 Silent p.C717C 0.18 TCGA-HU-A4GU-01 6 138202498 138202498 G A TNFAIP3 3'UTR 0.26 TCGA-HU-A4GU-01 6 144759958 144759958 G A UTRN Missense_Mutation p.R440H 0.34 deleterious(0) probably_damaging(1) TCGA-HU-A4GU-01 6 145156929 145156929 G A UTRN Missense_Mutation p.A3227T 0.26 tolerated(0.58) possibly_damaging(0.509) TCGA-HU-A4GU-01 6 146720510 146720510 G A GRM1 Missense_Mutation p.A779T 0.29 deleterious(0.01) probably_damaging(0.993) TCGA-HU-A4GU-01 6 152644683 152644683 C T SYNE1 Missense_Mutation p.A5283T 0.35 benign(0.046) TCGA-HU-A4GU-01 6 152646295 152646295 C T SYNE1 Missense_Mutation p.R5194H 0.07 probably_damaging(0.999) TCGA-HU-A4GU-01 6 15524722 15524722 C T DTNBP1 Intron 0.05 TCGA-HU-A4GU-01 6 155606374 155606374 C T TFB1M Missense_Mutation p.R195H 0.38 deleterious(0) probably_damaging(0.982) TCGA-HU-A4GU-01 6 155743924 155743924 G A NOX3 Silent p.C404C 0.32 TCGA-HU-A4GU-01 6 159401964 159401964 C T RSPH3 Missense_Mutation p.R376Q 0.06 deleterious(0.05) possibly_damaging(0.903) TCGA-HU-A4GU-01 6 159618559 159618559 C A FNDC1 Missense_Mutation p.P69H 0.04 deleterious(0) unknown(0) TCGA-HU-A4GU-01 6 165806196 165806196 G - PDE10A Frame_Shift_Del p.T532Mfs*2 0.49 TCGA-HU-A4GU-01 6 168273011 168273011 C T MLLT4 Nonsense_Mutation p.R178* 0.28 TCGA-HU-A4GU-01 6 170592753 170592753 G A DLL1 Silent p.G538G 0.40 TCGA-HU-A4GU-01 6 24523088 24523088 G A ALDH5A1 Missense_Mutation p.V383I 0.26 tolerated(0.14) benign(0.007) TCGA-HU-A4GU-01 6 24653291 24653291 T - TDP2 Frame_Shift_Del p.M243Wfs*3 0.28 TCGA-HU-A4GU-01 6 24718988 24718988 T - C6orf62 5'UTR 0.35 TCGA-HU-A4GU-01 6 24843458 24843458 C T FAM65B Missense_Mutation p.A518T 0.30 tolerated(0.17) benign(0.001) TCGA-HU-A4GU-01 6 25921306 25921306 C A SLC17A2 Missense_Mutation p.G164C 0.09 deleterious(0.02) probably_damaging(0.999) TCGA-HU-A4GU-01 6 27114952 27114952 C T HIST1H2AH Silent p.A15A 0.34 TCGA-HU-A4GU-01 6 31127381 31127381 G A TCF19 Silent p.R45R 0.41 TCGA-HU-A4GU-01 6 31431864 31431864 T C HCP5 RNA 0.27 TCGA-HU-A4GU-01 6 31548444 31548444 G A LTB 3'UTR 0.17 TCGA-HU-A4GU-01 6 31599862 31599862 G A PRRC2A Missense_Mutation p.A1138T 0.10 unknown(0) TCGA-HU-A4GU-01 6 31668763 31668763 G A ABHD16A Missense_Mutation p.A100V 0.43 tolerated(0.4) benign(0.001) TCGA-HU-A4GU-01 6 32097117 32097117 G A FKBPL Silent p.G147G 0.36 TCGA-HU-A4GU-01 6 32137062 32137062 G A AGPAT1 Silent p.G281G 0.36 TCGA-HU-A4GU-01 6 32160020 32160020 G - GPSM3 Frame_Shift_Del p.P17Lfs*77 0.25 TCGA-HU-A4GU-01 6 32188990 32188990 G A NOTCH4 Silent p.G188G 0.30 TCGA-HU-A4GU-01 6 3225000 3225000 G A TUBB2B Silent p.G441G 0.32 TCGA-HU-A4GU-01 6 32847201 32847201 T - PPP1R2P1 RNA 0.29 TCGA-HU-A4GU-01 6 32947641 32947641 C A BRD2 Silent p.A661A 0.10 TCGA-HU-A4GU-01 6 33658863 33658863 G T ITPR3 Missense_Mutation p.R2401L 0.39 deleterious(0.05) benign(0.326) TCGA-HU-A4GU-01 6 37250059 37250059 G - TBC1D22B Frame_Shift_Del p.A175Pfs*4 0.29 TCGA-HU-A4GU-01 6 39041466 39041466 C T GLP1R Silent p.G248G 0.38 TCGA-HU-A4GU-01 6 39895114 39895114 C A MOCS1 Missense_Mutation p.Q68H 0.36 tolerated(0.27) benign(0.005) TCGA-HU-A4GU-01 6 405052 405052 G A IRF4 Silent p.L378L 0.32 TCGA-HU-A4GU-01 6 4069126 4069126 A C FAM217A Missense_Mutation p.V444G 0.40 tolerated(0.07) probably_damaging(0.975) TCGA-HU-A4GU-01 6 41738915 41738915 C T FRS3 Silent p.P307P 0.11 TCGA-HU-A4GU-01 6 42231075 42231075 C T TRERF1 Missense_Mutation p.D623N 0.39 tolerated(0.05) possibly_damaging(0.555) TCGA-HU-A4GU-01 6 43042498 43042498 C A KLC4 3'UTR 0.36 TCGA-HU-A4GU-01 6 43154154 43154154 C T CUL9 Silent p.G404G 0.29 TCGA-HU-A4GU-01 6 46660831 46660831 G T TDRD6 Nonsense_Mutation p.E1656* 0.30 TCGA-HU-A4GU-01 6 46661433 46661433 A G TDRD6 Silent p.L1856L 0.49 TCGA-HU-A4GU-01 6 51930802 51930802 A - PKHD1 Frame_Shift_Del p.F284Lfs*35 0.25 TCGA-HU-A4GU-01 6 55196524 55196524 A C GFRAL Missense_Mutation p.S12R 0.17 tolerated(0.34) benign(0.003) TCGA-HU-A4GU-01 6 55406891 55406891 T G HMGCLL1 Missense_Mutation p.E82D 0.22 deleterious(0.01) probably_damaging(0.992) TCGA-HU-A4GU-01 6 56420259 56420259 G A DST Missense_Mutation p.A2384V 0.37 probably_damaging(0.971) TCGA-HU-A4GU-01 6 656858 656858 G T HUS1B Silent p.V29V 0.36 TCGA-HU-A4GU-01 6 66204765 66204765 G T EYS Nonsense_Mutation p.S180* 0.34 TCGA-HU-A4GU-01 6 70037717 70037717 C A BAI3 Missense_Mutation p.P991T 0.21 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GU-01 6 70991121 70991121 G - COL9A1 Frame_Shift_Del p.P283Lfs*45 0.36 TCGA-HU-A4GU-01 6 71235709 71235709 A G FAM135A Silent p.L974L 0.11 TCGA-HU-A4GU-01 6 71571705 71571705 A G SMAP1 3'UTR 0.20 TCGA-HU-A4GU-01 6 71665962 71665962 G A B3GAT2 Silent p.G57G 0.36 TCGA-HU-A4GU-01 6 74161472 74161472 C G MB21D1 Missense_Mutation p.G145R 0.20 tolerated(0.16) benign(0.037) TCGA-HU-A4GU-01 6 76412665 76412665 A C SENP6 Missense_Mutation p.N865H 0.25 deleterious(0.01) possibly_damaging(0.701) TCGA-HU-A4GU-01 6 78172572 78172572 C T HTR1B Silent p.P183P 0.22 TCGA-HU-A4GU-01 6 79918293 79918293 G A HMGN3 Missense_Mutation p.P23S 0.23 deleterious(0.04) benign(0.145) TCGA-HU-A4GU-01 6 83074637 83074637 C T TPBG 5'UTR 0.20 TCGA-HU-A4GU-01 6 90377778 90377778 G A MDN1 Silent p.G4683G 0.21 TCGA-HU-A4GU-01 6 90428516 90428516 A T MDN1 Missense_Mutation p.D2097E 0.26 probably_damaging(1) TCGA-HU-A4GU-01 6 90450058 90450058 T - MDN1 Frame_Shift_Del p.G1497Afs*10 0.23 TCGA-HU-A4GU-01 6 90642334 90642334 G A BACH2 Silent p.G773G 0.28 TCGA-HU-A4GU-01 6 96996089 96996089 T - UFL1 Frame_Shift_Del p.L486* 0.29 TCGA-HU-A4GU-01 6 97634485 97634485 C A MMS22L Missense_Mutation p.E707D 0.10 deleterious(0.04) probably_damaging(0.987) TCGA-HU-A4GU-01 7 100350317 100350317 A C ZAN Missense_Mutation p.K863N 0.30 unknown(0) TCGA-HU-A4GU-01 7 100401094 100401094 G T EPHB4 Missense_Mutation p.P985T 0.23 deleterious_low_confidence(0.04) possibly_damaging(0.908) TCGA-HU-A4GU-01 7 100470351 100470351 C T TRIP6 Silent p.G428G 0.20 TCGA-HU-A4GU-01 7 100488956 100488956 A G ACHE Silent p.D519D 0.28 TCGA-HU-A4GU-01 7 100815807 100815807 G A NAT16 Silent p.G221G 0.50 TCGA-HU-A4GU-01 7 107423730 107423730 C T SLC26A3 Missense_Mutation p.A347T 0.37 deleterious(0) probably_damaging(0.994) TCGA-HU-A4GU-01 7 107696398 107696398 C A LAMB4 Missense_Mutation p.G1145V 0.40 deleterious(0) probably_damaging(0.992) TCGA-HU-A4GU-01 7 11514158 11514158 T G THSD7A Missense_Mutation p.E685D 0.29 deleterious(0) probably_damaging(0.971) TCGA-HU-A4GU-01 7 116139935 116139935 G A CAV2 Missense_Mutation p.A34T 0.41 tolerated(0.39) benign(0.007) TCGA-HU-A4GU-01 7 117432385 117432385 G A CTTNBP2 Missense_Mutation p.R289C 0.40 deleterious(0.02) possibly_damaging(0.582) TCGA-HU-A4GU-01 7 119915384 119915384 A G KCND2 Missense_Mutation p.D233G 0.22 deleterious(0.02) probably_damaging(1) TCGA-HU-A4GU-01 7 1275539 1275539 G A UNCX Silent p.A174A 0.26 TCGA-HU-A4GU-01 7 127669503 127669503 G T LRRC4 Silent p.R397R 0.07 TCGA-HU-A4GU-01 7 127669511 127669511 C T LRRC4 Missense_Mutation p.A395T 0.23 deleterious(0) benign(0.297) TCGA-HU-A4GU-01 7 128587086 128587086 A T IRF5 Missense_Mutation p.M153L 0.32 tolerated(0.5) benign(0.019) TCGA-HU-A4GU-01 7 133059628 133059628 G A EXOC4 Missense_Mutation p.V352I 0.31 tolerated(0.16) benign(0.288) TCGA-HU-A4GU-01 7 135418799 135418799 G A FAM180A Missense_Mutation p.A149V 0.50 tolerated(0.07) benign(0.283) TCGA-HU-A4GU-01 7 136700065 136700065 T G CHRM2 Silent p.S151S 0.35 TCGA-HU-A4GU-01 7 140159029 140159029 C T MKRN1 Silent p.A183A 0.34 TCGA-HU-A4GU-01 7 142495146 142495146 C T TRBJ2-7 Silent p.Y3Y 0.73 TCGA-HU-A4GU-01 7 143096040 143096040 T C EPHA1 Splice_Site p.X331_splice 0.36 TCGA-HU-A4GU-01 7 143096757 143096757 G A EPHA1 Silent p.G274G 0.30 TCGA-HU-A4GU-01 7 146997365 146997365 A G CNTNAP2 Missense_Mutation p.E494G 0.84 tolerated(1) benign(0.002) TCGA-HU-A4GU-01 7 14722438 14722438 A G DGKB Silent p.C286C 0.19 TCGA-HU-A4GU-01 7 150779570 150779570 G T TMUB1 Silent p.A27A 0.09 TCGA-HU-A4GU-01 7 150883948 150883948 G A ASB10 Silent p.S90S 0.15 TCGA-HU-A4GU-01 7 1539932 1539932 G A INTS1 Silent p.G140G 0.17 TCGA-HU-A4GU-01 7 20778637 20778637 G A ABCB5 Missense_Mutation p.A967T 0.24 tolerated(0.06) benign(0.168) TCGA-HU-A4GU-01 7 20778696 20778696 G A ABCB5 Silent p.A986A 0.26 TCGA-HU-A4GU-01 7 21628211 21628211 C T DNAH11 Nonsense_Mutation p.R644* 0.55 TCGA-HU-A4GU-01 7 27194754 27194754 G A HOXA7 Missense_Mutation p.T156M 0.05 deleterious(0.03) probably_damaging(0.988) TCGA-HU-A4GU-01 7 2740115 2740115 C T AMZ1 Silent p.F10F 0.44 TCGA-HU-A4GU-01 7 27570865 27570865 G A HIBADH Silent p.G266G 0.24 TCGA-HU-A4GU-01 7 2946189 2946189 G A CARD11 3'UTR 0.36 TCGA-HU-A4GU-01 7 30491130 30491130 G T NOD1 Missense_Mutation p.L635M 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-HU-A4GU-01 7 32909192 32909192 C T KBTBD2 Missense_Mutation p.R546Q 0.24 tolerated(0.17) benign(0.113) TCGA-HU-A4GU-01 7 36336702 36336702 G A EEPD1 Silent p.A472A 0.31 TCGA-HU-A4GU-01 7 36338750 36338750 G A EEPD1 Missense_Mutation p.A549T 0.23 tolerated(0.41) benign(0.013) TCGA-HU-A4GU-01 7 37780105 37780105 C A GPR141 Missense_Mutation p.S37Y 0.27 tolerated(0.16) possibly_damaging(0.879) TCGA-HU-A4GU-01 7 38254699 38254699 C T STARD3NL Missense_Mutation p.A125V 0.19 tolerated(1) benign(0.086) TCGA-HU-A4GU-01 7 38725208 38725208 C T FAM183B Missense_Mutation p.R133H 0.22 tolerated(0.39) benign(0.003) TCGA-HU-A4GU-01 7 38908811 38908811 G T VPS41 Missense_Mutation p.L35I 0.24 tolerated(0.48) benign(0.085) TCGA-HU-A4GU-01 7 39503921 39503921 C T POU6F2 Missense_Mutation p.A571V 0.29 deleterious(0) unknown(0) TCGA-HU-A4GU-01 7 42950258 42950258 T G C7orf25 Missense_Mutation p.N139T 0.11 tolerated(0.43) benign(0.013) TCGA-HU-A4GU-01 7 42972066 42972066 G A MRPL32 Silent p.L27L 0.32 TCGA-HU-A4GU-01 7 43351499 43351499 C T HECW1 Silent p.G55G 0.21 TCGA-HU-A4GU-01 7 44150328 44150328 G A AEBP1 Missense_Mutation p.D469N 0.10 deleterious(0.02) probably_damaging(0.997) TCGA-HU-A4GU-01 7 44556414 44556414 C T NPC1L1 Missense_Mutation p.R1163H 0.16 tolerated(0.36) benign(0.082) TCGA-HU-A4GU-01 7 44799789 44799789 G - ZMIZ2 Frame_Shift_Del p.G346Afs*10 0.36 TCGA-HU-A4GU-01 7 45113138 45113138 G A CCM2 Missense_Mutation p.A316T 0.37 deleterious(0) probably_damaging(0.977) TCGA-HU-A4GU-01 7 47344501 47344501 C T TNS3 Silent p.T917T 0.28 TCGA-HU-A4GU-01 7 48280634 48280634 C T ABCA13 Silent p.G411G 0.23 TCGA-HU-A4GU-01 7 5569018 5569018 C A ACTB Missense_Mutation p.G46V 0.23 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-HU-A4GU-01 7 6027156 6027157 - T PMS2 Frame_Shift_Ins p.D414Rfs*44 0.22 TCGA-HU-A4GU-01 7 63982401 63982401 C T ZNF680 Missense_Mutation p.G244D 0.12 deleterious(0.04) benign(0.127) TCGA-HU-A4GU-01 7 64528866 64528866 C T SNORA22 3'Flank 0.23 TCGA-HU-A4GU-01 7 6639900 6639900 G A C7orf26 Missense_Mutation p.A341T 0.28 tolerated(0.21) possibly_damaging(0.695) TCGA-HU-A4GU-01 7 70254795 70254795 G T AUTS2 Missense_Mutation p.A865S 0.63 tolerated(1) benign(0.015) TCGA-HU-A4GU-01 7 70597954 70597954 G A WBSCR17 Missense_Mutation p.A56T 0.24 tolerated_low_confidence(0.51) benign(0) TCGA-HU-A4GU-01 7 72430662 72430662 C T TRIM74 Missense_Mutation p.A206T 0.27 tolerated(0.54) benign(0.241) TCGA-HU-A4GU-01 7 72717442 72717442 T G NSUN5 Missense_Mutation p.S456R 0.24 tolerated_low_confidence(0.07) benign(0.013) TCGA-HU-A4GU-01 7 72849230 72849230 C T FZD9 Missense_Mutation p.A298V 0.27 tolerated(0.08) possibly_damaging(0.508) TCGA-HU-A4GU-01 7 73013902 73013902 G A MLXIPL Missense_Mutation p.P342L 0.06 tolerated(0.19) benign(0.075) TCGA-HU-A4GU-01 7 73098116 73098116 C T WBSCR22 Missense_Mutation p.A23V 0.07 deleterious(0) benign(0.16) TCGA-HU-A4GU-01 7 75192520 75192520 C T HIP1 Missense_Mutation p.R284Q 0.24 deleterious(0) possibly_damaging(0.882) TCGA-HU-A4GU-01 7 75896681 75896681 G A SRRM3 Silent p.Q312Q 0.44 TCGA-HU-A4GU-01 7 76112320 76112320 C - DTX2 Frame_Shift_Del p.R256Gfs*6 0.10 TCGA-HU-A4GU-01 7 77569849 77569849 T C PHTF2 Missense_Mutation p.L548S 0.18 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GU-01 7 78636429 78636429 T C MAGI2 Missense_Mutation p.N132S 0.15 deleterious(0.01) possibly_damaging(0.497) TCGA-HU-A4GU-01 7 80374227 80374227 G A SEMA3C Nonsense_Mutation p.Q747* 0.13 TCGA-HU-A4GU-01 7 80418778 80418778 A C SEMA3C Missense_Mutation p.F400V 0.18 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GU-01 7 82785132 82785132 T G PCLO Missense_Mutation p.Q275H 0.16 unknown(0) TCGA-HU-A4GU-01 7 83590976 83590976 A C SEMA3A Missense_Mutation p.L676R 0.18 tolerated(0.05) probably_damaging(0.959) TCGA-HU-A4GU-01 7 84642152 84642152 G A SEMA3D Missense_Mutation p.R572C 0.44 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GU-01 7 86556159 86556159 G - KIAA1324L Frame_Shift_Del p.P388Lfs*63 0.13 TCGA-HU-A4GU-01 7 86813734 86813735 AA - DMTF1 Frame_Shift_Del p.K282Efs*8 0.08 TCGA-HU-A4GU-01 7 87011774 87011774 A - CROT Frame_Shift_Del p.K435Sfs*2 0.20 TCGA-HU-A4GU-01 7 87021891 87021891 C T CROT Missense_Mutation p.R507W 0.12 deleterious(0) probably_damaging(0.932) TCGA-HU-A4GU-01 7 87165829 87165829 T - ABCB1 Frame_Shift_Del p.N809Tfs*6 0.12 TCGA-HU-A4GU-01 7 87810888 87810888 A - ADAM22 Frame_Shift_Del p.N827Mfs*68 0.11 TCGA-HU-A4GU-01 7 88963494 88963494 C T ZNF804B Missense_Mutation p.H400Y 0.12 tolerated(0.21) benign(0.02) TCGA-HU-A4GU-01 7 88964271 88964271 A G ZNF804B Missense_Mutation p.S659G 0.08 tolerated(0.28) benign(0.079) TCGA-HU-A4GU-01 7 88965847 88965847 C A ZNF804B Missense_Mutation p.A1184E 0.13 deleterious(0.04) possibly_damaging(0.545) TCGA-HU-A4GU-01 7 88966259 88966259 A C ZNF804B Missense_Mutation p.Q1321H 0.69 deleterious(0.02) probably_damaging(0.999) TCGA-HU-A4GU-01 7 89861856 89861856 G A STEAP2 Missense_Mutation p.G464D 0.10 deleterious(0) probably_damaging(0.967) TCGA-HU-A4GU-01 7 91502897 91502897 C T MTERF 3'UTR 0.14 TCGA-HU-A4GU-01 7 91691589 91691589 C T AKAP9 Silent p.G1922G 0.06 TCGA-HU-A4GU-01 7 92122435 92122435 A G PEX1 Silent p.R1013R 0.10 TCGA-HU-A4GU-01 7 92134057 92134057 C T PEX1 Missense_Mutation p.R687Q 0.07 tolerated(0.23) benign(0.121) TCGA-HU-A4GU-01 7 92147474 92147474 C T PEX1 Silent p.T151T 0.08 TCGA-HU-A4GU-01 7 92761948 92761948 C A SAMD9L Missense_Mutation p.A1113S 0.06 tolerated(0.22) benign(0.09) TCGA-HU-A4GU-01 7 95157167 95157167 C T ASB4 Missense_Mutation p.T177M 0.33 deleterious(0.04) possibly_damaging(0.889) TCGA-HU-A4GU-01 7 97800932 97800932 C T LMTK2 Missense_Mutation p.A246V 0.33 deleterious(0) probably_damaging(1) TCGA-HU-A4GU-01 7 98559056 98559056 G T TRRAP Missense_Mutation p.S2214I 0.35 benign(0.005) TCGA-HU-A4GU-01 7 98559094 98559094 C T TRRAP Missense_Mutation p.P2227S 0.31 benign(0.039) TCGA-HU-A4GU-01 7 99473841 99473841 A G OR2AE1 Silent p.V272V 0.30 TCGA-HU-A4GU-01 7 99771469 99771469 C - GPC2 Frame_Shift_Del p.G294Afs*8 0.25 TCGA-HU-A4GU-01 8 100050671 100050671 T - VPS13B Frame_Shift_Del p.L58* 0.30 TCGA-HU-A4GU-01 8 101011503 101011503 C T RGS22 Missense_Mutation p.R979H 0.16 deleterious(0) probably_damaging(0.991) TCGA-HU-A4GU-01 8 103274146 103274146 T C UBR5 Silent p.G2613G 0.11 TCGA-HU-A4GU-01 8 103282387 103282387 G A UBR5 Silent p.I2370I 0.06 TCGA-HU-A4GU-01 8 103310701 103310701 T G UBR5 Missense_Mutation p.T1115P 0.21 deleterious(0) probably_damaging(0.986) TCGA-HU-A4GU-01 8 104337204 104337204 T - FZD6 Frame_Shift_Del p.F292Sfs*10 0.21 TCGA-HU-A4GU-01 8 104447873 104447873 C T DCAF13 Missense_Mutation p.R421C 0.07 deleterious(0) possibly_damaging(0.813) TCGA-HU-A4GU-01 8 104898096 104898096 T G RIMS2 Silent p.S423S 0.23 TCGA-HU-A4GU-01 8 105235915 105235915 G T RIMS2 Intron 0.28 TCGA-HU-A4GU-01 8 106573666 106573666 G - ZFPM2 Frame_Shift_Del p.P128Rfs*8 0.09 TCGA-HU-A4GU-01 8 113988259 113988259 T C CSMD3 Silent p.T383T 0.26 TCGA-HU-A4GU-01 8 116631441 116631441 A G TRPS1 Missense_Mutation p.V295A 0.16 tolerated_low_confidence(0.3) benign(0.005) TCGA-HU-A4GU-01 8 118169969 118169969 T C SLC30A8 Missense_Mutation p.V153A 0.29 deleterious(0.04) benign(0.077) TCGA-HU-A4GU-01 8 119936576 119936576 G A TNFRSF11B 3'UTR 0.28 TCGA-HU-A4GU-01 8 119936808 119936808 G A TNFRSF11B Silent p.G337G 0.28 TCGA-HU-A4GU-01 8 120613700 120613700 A G ENPP2 Missense_Mutation p.V279A 0.17 tolerated(0.3) benign(0.001) TCGA-HU-A4GU-01 8 121426273 121426273 A G MRPL13 Missense_Mutation p.Y158H 0.08 deleterious(0) probably_damaging(0.968) TCGA-HU-A4GU-01 8 124526525 124526525 C T FBXO32 Missense_Mutation p.A141T 0.35 deleterious(0.04) possibly_damaging(0.898) TCGA-HU-A4GU-01 8 131226856 131226856 C T ASAP1 Silent p.A117A 0.16 TCGA-HU-A4GU-01 8 133726256 133726256 G T TMEM71 Missense_Mutation p.T267N 0.16 deleterious(0.02) benign(0.386) TCGA-HU-A4GU-01 8 133898733 133898733 G A TG Silent p.L372L 0.08 TCGA-HU-A4GU-01 8 133899503 133899503 T C TG Missense_Mutation p.V629A 0.26 deleterious(0) possibly_damaging(0.906) TCGA-HU-A4GU-01 8 142185496 142185496 C A DENND3 Missense_Mutation p.L745M 0.25 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GU-01 8 142222546 142222546 C - SLC45A4 Frame_Shift_Del p.G633Afs*25 0.17 TCGA-HU-A4GU-01 8 142238421 142238421 G A SLC45A4 5'UTR 0.24 TCGA-HU-A4GU-01 8 142487536 142487536 C T MROH5 3'UTR 0.64 TCGA-HU-A4GU-01 8 144620691 144620691 G - ZC3H3 Frame_Shift_Del p.A283Pfs*17 0.13 TCGA-HU-A4GU-01 8 145067010 145067010 C T GRINA 3'UTR 0.32 TCGA-HU-A4GU-01 8 145584466 145584466 C A SLC52A2 Missense_Mutation p.L377M 0.15 deleterious(0.03) possibly_damaging(0.714) TCGA-HU-A4GU-01 8 145689484 145689484 A - CYHR1 Intron 0.12 TCGA-HU-A4GU-01 8 145738385 145738385 G A RECQL4 Missense_Mutation p.A867V 0.33 tolerated(0.32) benign(0.009) TCGA-HU-A4GU-01 8 18490163 18490163 G T PSD3 Missense_Mutation p.F790L 0.28 tolerated(0.15) possibly_damaging(0.795) TCGA-HU-A4GU-01 8 195870 195870 A G ZNF596 Silent p.G341G 0.67 TCGA-HU-A4GU-01 8 21960331 21960331 C T FAM160B2 Silent p.G707G 0.58 TCGA-HU-A4GU-01 8 22107661 22107661 G A POLR3D Missense_Mutation p.R332H 0.08 deleterious(0) possibly_damaging(0.473) TCGA-HU-A4GU-01 8 27668479 27668479 A T PBK Missense_Mutation p.D256E 0.57 tolerated(0.26) benign(0.074) TCGA-HU-A4GU-01 8 28989840 28989840 C T KIF13B Missense_Mutation p.R976H 0.55 deleterious(0.03) probably_damaging(0.988) TCGA-HU-A4GU-01 8 28991587 28991587 C T KIF13B Silent p.P918P 0.50 TCGA-HU-A4GU-01 8 30407035 30407035 G A RBPMS 3'Flank 0.07 TCGA-HU-A4GU-01 8 3224684 3224684 G A CSMD1 Silent p.P995P 0.50 TCGA-HU-A4GU-01 8 38273508 38273508 G T FGFR1 Silent p.P609P 0.24 TCGA-HU-A4GU-01 8 39644512 39644512 T C ADAM2 Missense_Mutation p.Y291C 0.45 deleterious(0) possibly_damaging(0.521) TCGA-HU-A4GU-01 8 41791415 41791415 G A KAT6A Silent p.G1441G 0.17 TCGA-HU-A4GU-01 8 42179452 42179452 A - IKBKB Frame_Shift_Del p.K577Nfs*31 0.33 TCGA-HU-A4GU-01 8 57026083 57026083 G A MOS Silent p.G153G 0.27 TCGA-HU-A4GU-01 8 61192348 61192348 C T CA8 Silent p.S64S 0.22 TCGA-HU-A4GU-01 8 61778057 61778057 G A CHD7 Silent p.E2853E 0.29 TCGA-HU-A4GU-01 8 64098976 64098976 G - YTHDF3 Frame_Shift_Del p.T137Qfs*41 0.09 TCGA-HU-A4GU-01 8 64099642 64099642 G A YTHDF3 Missense_Mutation p.R357H 0.07 deleterious(0.05) possibly_damaging(0.715) TCGA-HU-A4GU-01 8 64099819 64099819 G A YTHDF3 Missense_Mutation p.R416H 0.07 deleterious(0.03) possibly_damaging(0.715) TCGA-HU-A4GU-01 8 66619297 66619297 C A MTFR1 Silent p.P190P 0.24 TCGA-HU-A4GU-01 8 67040642 67040642 G A TRIM55 Missense_Mutation p.G91E 0.13 deleterious(0) possibly_damaging(0.842) TCGA-HU-A4GU-01 8 67546767 67546767 G T VCPIP1 Missense_Mutation p.T1213N 0.12 deleterious_low_confidence(0.03) benign(0.01) TCGA-HU-A4GU-01 8 67716612 67716612 A - SGK3 Frame_Shift_Del p.K63Nfs*8 0.10 TCGA-HU-A4GU-01 8 67809147 67809147 C T MCMDC2 Silent p.L527L 0.16 TCGA-HU-A4GU-01 8 68028332 68028332 G A CSPP1 Missense_Mutation p.A486T 0.12 tolerated(1) benign(0.003) TCGA-HU-A4GU-01 8 68965434 68965434 A T PREX2 Missense_Mutation p.K349M 0.07 deleterious(0) probably_damaging(0.997) TCGA-HU-A4GU-01 8 70533326 70533326 A C SULF1 Silent p.G478G 0.47 TCGA-HU-A4GU-01 8 72969193 72969193 G T TRPA1 Missense_Mutation p.Q385K 0.11 deleterious(0.01) benign(0.113) TCGA-HU-A4GU-01 8 72987730 72987730 C T TRPA1 5'UTR 0.10 TCGA-HU-A4GU-01 8 75227608 75227608 G A JPH1 Silent p.G209G 0.16 TCGA-HU-A4GU-01 8 75227780 75227780 G A JPH1 Missense_Mutation p.A152V 0.15 deleterious(0) probably_damaging(0.985) TCGA-HU-A4GU-01 8 82644967 82644967 C T CHMP4C Silent p.L36L 0.23 TCGA-HU-A4GU-01 8 86250523 86250524 - C CA1 Frame_Shift_Ins p.H65Afs*8 0.16 TCGA-HU-A4GU-01 8 87878715 87878715 G A CNBD1 5'UTR 0.22 TCGA-HU-A4GU-01 8 89053979 89053979 T G MMP16 Missense_Mutation p.N512H 0.80 deleterious(0) probably_damaging(0.986) TCGA-HU-A4GU-01 8 90937611 90937611 G T OSGIN2 Missense_Mutation p.A501S 0.10 tolerated(0.19) benign(0.006) TCGA-HU-A4GU-01 8 93004021 93004021 A G RUNX1T1 Silent p.N290N 0.15 TCGA-HU-A4GU-01 8 94745991 94745991 C T RBM12B Missense_Mutation p.R883H 0.17 tolerated(0.06) probably_damaging(0.976) TCGA-HU-A4GU-01 8 97157302 97157302 C T GDF6 Missense_Mutation p.R286H 0.14 deleterious(0.03) benign(0.014) TCGA-HU-A4GU-01 8 99015935 99015935 C T MATN2 Silent p.C417C 0.05 TCGA-HU-A4GU-01 8 99170503 99170503 C T POP1 3'UTR 0.04 TCGA-HU-A4GU-01 8 99440303 99440303 G A KCNS2 Silent p.S32S 0.24 TCGA-HU-A4GU-01 9 100080790 100080790 G A CCDC180 Silent p.T379T 0.62 TCGA-HU-A4GU-01 9 100085148 100085148 G A CCDC180 Missense_Mutation p.R442H 0.14 tolerated(0.16) benign(0.233) TCGA-HU-A4GU-01 9 100128909 100128909 C T CCDC180 Silent p.C1416C 0.13 TCGA-HU-A4GU-01 9 100137832 100137832 C T CCDC180 Silent p.G1645G 0.19 TCGA-HU-A4GU-01 9 101822204 101822204 G A COL15A1 Missense_Mutation p.G1124E 0.25 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GU-01 9 102591219 102591219 G A NR4A3 Missense_Mutation p.A310T 0.33 deleterious(0) probably_damaging(0.953) TCGA-HU-A4GU-01 9 104499750 104499750 G A GRIN3A Missense_Mutation p.S171L 0.20 deleterious(0.02) benign(0.085) TCGA-HU-A4GU-01 9 107571802 107571802 C T ABCA1 Missense_Mutation p.A1407T 0.19 tolerated(0.13) benign(0.004) TCGA-HU-A4GU-01 9 108370183 108370183 A C FKTN Missense_Mutation p.H244P 0.27 deleterious(0.02) benign(0.107) TCGA-HU-A4GU-01 9 111617575 111617575 G A ACTL7B Silent p.G212G 0.21 TCGA-HU-A4GU-01 9 112013771 112013771 C T EPB41L4B Missense_Mutation p.A434T 0.04 tolerated(0.09) possibly_damaging(0.581) TCGA-HU-A4GU-01 9 112172545 112172545 G A PTPN3 Silent p.G488G 0.42 TCGA-HU-A4GU-01 9 112219457 112219457 T C PTPN3 Silent p.L95L 0.36 TCGA-HU-A4GU-01 9 114124231 114124231 T C KIAA0368 3'UTR 0.26 TCGA-HU-A4GU-01 9 115203985 115203985 C A HSDL2 Missense_Mutation p.P267H 0.20 deleterious(0.01) benign(0.392) TCGA-HU-A4GU-01 9 115337496 115337496 C T KIAA1958 Missense_Mutation p.A379V 0.35 tolerated(0.49) benign(0.001) TCGA-HU-A4GU-01 9 115806416 115806416 T - ZFP37 Frame_Shift_Del p.N161Ifs*24 0.23 TCGA-HU-A4GU-01 9 116930329 116930329 G A COL27A1 Missense_Mutation p.G165D 0.21 unknown(0) TCGA-HU-A4GU-01 9 117165145 117165145 C T DFNB31 Silent p.T871T 0.17 TCGA-HU-A4GU-01 9 117849041 117849041 G A TNC Silent p.G323G 0.22 TCGA-HU-A4GU-01 9 123722601 123722601 T C C5 Missense_Mutation p.M1535V 0.24 tolerated(0.46) benign(0.006) TCGA-HU-A4GU-01 9 129870996 129870996 G A ANGPTL2 Silent p.C5C 0.40 TCGA-HU-A4GU-01 9 130630298 130630298 C T AK1 Missense_Mutation p.A192T 0.17 tolerated(0.39) benign(0) TCGA-HU-A4GU-01 9 130982549 130982549 C A DNM1 Missense_Mutation p.L260I 0.22 tolerated(0.06) possibly_damaging(0.907) TCGA-HU-A4GU-01 9 131750408 131750408 C G NUP188 Missense_Mutation p.R826G 0.23 deleterious(0.02) probably_damaging(0.996) TCGA-HU-A4GU-01 9 131760467 131760467 G A NUP188 Missense_Mutation p.R1130H 0.22 tolerated(0.15) benign(0.001) TCGA-HU-A4GU-01 9 131768572 131768572 G A NUP188 Silent p.A1666A 0.20 TCGA-HU-A4GU-01 9 133901769 133901769 G A LAMC3 Nonsense_Mutation p.W157* 0.21 TCGA-HU-A4GU-01 9 134351425 134351425 C - PRRC2B Frame_Shift_Del p.P1305Hfs*161 0.15 TCGA-HU-A4GU-01 9 136270471 136270471 G A C9orf96 Missense_Mutation p.A657T 0.27 tolerated_low_confidence(0.13) benign(0.236) TCGA-HU-A4GU-01 9 136804319 136804319 C T VAV2 Missense_Mutation p.R76H 0.18 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GU-01 9 137688237 137688237 C T COL5A1 Silent p.D939D 0.13 TCGA-HU-A4GU-01 9 138515825 138515825 G A GLT6D1 3'UTR 0.25 TCGA-HU-A4GU-01 9 139327500 139327500 C T INPP5E Missense_Mutation p.R396H 0.18 deleterious(0) probably_damaging(0.997) TCGA-HU-A4GU-01 9 139752000 139752000 G - MAMDC4 Frame_Shift_Del p.G764Afs*33 0.16 TCGA-HU-A4GU-01 9 139794987 139794987 G A TRAF2 Intron 0.10 TCGA-HU-A4GU-01 9 139905693 139905693 G A ABCA2 Silent p.H1956H 0.12 TCGA-HU-A4GU-01 9 140218289 140218289 G A EXD3 Missense_Mutation p.A691V 0.22 tolerated(0.07) possibly_damaging(0.824) TCGA-HU-A4GU-01 9 140611397 140611397 G A EHMT1 Silent p.Q135Q 0.24 TCGA-HU-A4GU-01 9 15623310 15623310 T A CCDC171 Missense_Mutation p.L241I 0.08 tolerated(0.09) probably_damaging(0.998) TCGA-HU-A4GU-01 9 18504938 18504938 C T ADAMTSL1 Missense_Mutation p.R59C 0.08 deleterious(0) probably_damaging(0.995) TCGA-HU-A4GU-01 9 23762152 23762152 T G ELAVL2 Silent p.S27S 0.33 TCGA-HU-A4GU-01 9 2652951 2652951 T C VLDLR Splice_Site p.X862_splice 0.38 TCGA-HU-A4GU-01 9 27566799 27566799 C T C9orf72 Missense_Mutation p.R107H 0.09 tolerated(0.06) possibly_damaging(0.584) TCGA-HU-A4GU-01 9 27950147 27950147 C T LINGO2 Missense_Mutation p.G175R 0.30 deleterious(0.02) probably_damaging(1) TCGA-HU-A4GU-01 9 32488855 32488855 A C DDX58 Missense_Mutation p.I277R 0.57 deleterious(0) probably_damaging(1) TCGA-HU-A4GU-01 9 34379098 34379098 G T C9orf24 3'UTR 0.41 TCGA-HU-A4GU-01 9 36583695 36583695 A - MELK Frame_Shift_Del p.N45Tfs*3 0.25 TCGA-HU-A4GU-01 9 6805761 6805761 G T KDM4C Missense_Mutation p.A103S 0.59 tolerated(0.06) possibly_damaging(0.869) TCGA-HU-A4GU-01 9 82323668 82323668 C T TLE4 Silent p.A410A 0.43 TCGA-HU-A4GU-01 9 87285857 87285857 C A NTRK2 Missense_Mutation p.P65H 0.24 tolerated(0.25) benign(0.223) TCGA-HU-A4GU-01 9 89560864 89560864 G A GAS1 Silent p.G277G 0.62 TCGA-HU-A4GU-01 9 90322206 90322206 G A DAPK1 Missense_Mutation p.G1407D 0.14 deleterious(0.01) possibly_damaging(0.541) TCGA-HU-A4GU-01 9 92011708 92011708 C T SEMA4D Missense_Mutation p.A120T 0.26 tolerated(0.13) benign(0.001) TCGA-HU-A4GU-01 9 94800620 94800620 C A SPTLC1 Missense_Mutation p.E388D 0.12 tolerated(0.27) benign(0.016) TCGA-HU-A4GU-01 9 95277103 95277103 G A ECM2 Silent p.D288D 0.18 TCGA-HU-A4GU-01 9 95768399 95768399 A G FGD3 Silent p.V258V 0.24 TCGA-HU-A4GU-01 9 96846962 96846962 G A PTPDC1 Silent p.K50K 0.24 TCGA-HU-A4GU-01 9 97062645 97062645 C T ZNF169 Missense_Mutation p.R269C 0.18 deleterious(0) probably_damaging(0.996) TCGA-HU-A4GU-01 9 97063480 97063480 G A ZNF169 Missense_Mutation p.C547Y 0.19 deleterious(0) probably_damaging(0.989) TCGA-HU-A4GU-01 9 97084510 97084510 C T NUTM2F Missense_Mutation p.R272Q 0.83 deleterious(0.04) benign(0.223) TCGA-HU-A4GU-01 9 97848312 97848312 C A C9orf3 Intron 0.07 TCGA-HU-A4GU-01 9 98728971 98728971 C T ERCC6L2 Missense_Mutation p.S703F 0.27 deleterious(0.01) probably_damaging(0.928) TCGA-HU-A4GU-01 9 98775343 98775343 A - ERCC6L2 Frame_Shift_Del p.A478Hfs*3 0.17 TCGA-HU-A4GU-01 9 99107622 99107622 C T SLC35D2 Missense_Mutation p.A184T 0.09 deleterious(0) probably_damaging(0.98) TCGA-HU-A4GU-01 X 100667424 100667424 C T HNRNPH2 Nonsense_Mutation p.R150* 0.40 TCGA-HU-A4GU-01 X 100880572 100880572 A T ARMCX3 Missense_Mutation p.K201N 0.35 deleterious(0) probably_damaging(0.987) TCGA-HU-A4GU-01 X 100911645 100911645 G T ARMCX2 Silent p.G310G 0.28 TCGA-HU-A4GU-01 X 100912155 100912155 T C ARMCX2 Silent p.A140A 0.46 TCGA-HU-A4GU-01 X 10535364 10535364 C T MID1 Missense_Mutation p.R75H 0.12 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GU-01 X 106890852 106890852 G A PRPS1 Missense_Mutation p.A241T 0.35 deleterious(0) probably_damaging(0.973) TCGA-HU-A4GU-01 X 106959928 106959928 C T TSC22D3 Intron 0.64 TCGA-HU-A4GU-01 X 107225281 107225281 G A TEX13B Missense_Mutation p.A26V 0.48 deleterious(0.04) benign(0.222) TCGA-HU-A4GU-01 X 107869522 107869522 C T COL4A5 Silent p.G1063G 0.10 TCGA-HU-A4GU-01 X 107909801 107909801 C A COL4A5 Missense_Mutation p.P1177Q 0.38 unknown(0) TCGA-HU-A4GU-01 X 108718609 108718609 G T GUCY2F Missense_Mutation p.A186D 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-HU-A4GU-01 X 118717107 118717107 C A UBE2A Silent p.P116P 0.33 TCGA-HU-A4GU-01 X 122755101 122755101 A G THOC2 Missense_Mutation p.S1375P 0.41 deleterious(0.02) benign(0.372) TCGA-HU-A4GU-01 X 125299270 125299270 C T DCAF12L2 Missense_Mutation p.R213H 0.29 deleterious(0.04) possibly_damaging(0.546) TCGA-HU-A4GU-01 X 125686047 125686047 A T DCAF12L1 Missense_Mutation p.L182Q 0.41 deleterious(0) probably_damaging(0.966) TCGA-HU-A4GU-01 X 128710001 128710001 G T OCRL Missense_Mutation p.W614L 0.34 deleterious(0) probably_damaging(1) TCGA-HU-A4GU-01 X 130678804 130678804 T C OR13H1 Missense_Mutation p.S253P 0.46 deleterious(0.03) benign(0.005) TCGA-HU-A4GU-01 X 138864876 138864876 C T ATP11C Silent p.R597R 0.34 TCGA-HU-A4GU-01 X 142967499 142967499 C A UBE2NL Silent p.A99A 0.11 TCGA-HU-A4GU-01 X 142967582 142967582 T C UBE2NL Missense_Mutation p.V127A 0.14 tolerated(1) benign(0.001) TCGA-HU-A4GU-01 X 142967616 142967616 T A UBE2NL Silent p.I138I 0.18 TCGA-HU-A4GU-01 X 142967657 142967657 G A UBE2NL Missense_Mutation p.S152N 0.11 tolerated(1) benign(0) TCGA-HU-A4GU-01 X 149901161 149901161 A G MTMR1 Missense_Mutation p.I339V 0.06 tolerated(0.08) benign(0.183) TCGA-HU-A4GU-01 X 153051471 153051471 C - IDH3G Intron 0.25 TCGA-HU-A4GU-01 X 153129001 153129001 T G L1CAM Missense_Mutation p.K1154T 0.21 deleterious(0) probably_damaging(0.968) TCGA-HU-A4GU-01 X 153223661 153223661 C T HCFC1 Missense_Mutation p.A615T 0.42 deleterious(0.03) probably_damaging(0.991) TCGA-HU-A4GU-01 X 153592993 153592993 G A FLNA Silent p.G641G 0.44 TCGA-HU-A4GU-01 X 154563727 154563727 G T CLIC2 Missense_Mutation p.L4M 0.30 tolerated_low_confidence(0.17) benign(0.002) TCGA-HU-A4GU-01 X 17818711 17818711 C T RAI2 Missense_Mutation p.V474M 0.36 tolerated(0.26) unknown(0) TCGA-HU-A4GU-01 X 18958163 18958163 G A PHKA2 Missense_Mutation p.R290C 0.41 deleterious(0) probably_damaging(0.969) TCGA-HU-A4GU-01 X 19560215 19560215 G - SH3KBP1 Frame_Shift_Del p.L574Cfs*39 0.33 TCGA-HU-A4GU-01 X 21985370 21985370 G A SMS Missense_Mutation p.A36T 0.38 tolerated(1) benign(0) TCGA-HU-A4GU-01 X 22056495 22056495 T C PHEX Intron 0.44 TCGA-HU-A4GU-01 X 2658943 2658943 A G CD99 3'UTR 0.16 TCGA-HU-A4GU-01 X 32662332 32662332 T G DMD Missense_Mutation p.E416D 0.28 possibly_damaging(0.764) TCGA-HU-A4GU-01 X 38160591 38160591 C T RPGR Missense_Mutation p.R323H 0.12 probably_damaging(0.998) TCGA-HU-A4GU-01 X 40982957 40982957 C - USP9X Frame_Shift_Del p.L28Sfs*51 0.38 TCGA-HU-A4GU-01 X 41201758 41201758 C T DDX3X Missense_Mutation p.R99C 0.32 deleterious(0.03) benign(0.332) TCGA-HU-A4GU-01 X 41333566 41333566 G A NYX Missense_Mutation p.R287H 0.38 deleterious(0.04) probably_damaging(0.982) TCGA-HU-A4GU-01 X 41586781 41586781 A G GPR82 Missense_Mutation p.I168V 0.06 tolerated(1) benign(0.003) TCGA-HU-A4GU-01 X 44703615 44703615 G A DUSP21 Silent p.S79S 0.06 TCGA-HU-A4GU-01 X 47497297 47497297 G A ELK1 Silent p.G313G 0.47 TCGA-HU-A4GU-01 X 47775652 47775652 C T ZNF81 Missense_Mutation p.T536I 0.44 tolerated(0.07) probably_damaging(0.999) TCGA-HU-A4GU-01 X 48164271 48164271 G A SSX9 RNA 0.03 TCGA-HU-A4GU-01 X 48751229 48751229 G A TIMM17B Silent p.G178G 0.18 TCGA-HU-A4GU-01 X 49032321 49032321 T C PRICKLE3 Missense_Mutation p.N517D 0.15 tolerated_low_confidence(0.63) benign(0) TCGA-HU-A4GU-01 X 49127023 49127023 G A PPP1R3F Missense_Mutation p.A231T 0.59 deleterious_low_confidence(0.04) benign(0.063) TCGA-HU-A4GU-01 X 53265541 53265541 G A IQSEC2 Silent p.G1138G 0.22 TCGA-HU-A4GU-01 X 53421695 53421695 C T SMC1A Intron 0.32 TCGA-HU-A4GU-01 X 53575028 53575028 G A HUWE1 Silent p.S3414S 0.40 TCGA-HU-A4GU-01 X 54496700 54496700 C T FGD1 Missense_Mutation p.G284S 0.50 tolerated(0.05) probably_damaging(0.937) TCGA-HU-A4GU-01 X 54780160 54780160 G A ITIH6 Silent p.H1092H 0.23 TCGA-HU-A4GU-01 X 54953052 54953052 G A TRO Missense_Mutation p.R565H 0.46 tolerated(0.67) unknown(0) TCGA-HU-A4GU-01 X 5810908 5810908 C T NLGN4X Missense_Mutation p.G801R 0.71 deleterious_low_confidence(0.02) possibly_damaging(0.546) TCGA-HU-A4GU-01 X 63412262 63412262 T C AMER1 Missense_Mutation p.N302S 0.07 tolerated(0.89) benign(0.006) TCGA-HU-A4GU-01 X 64955210 64955210 C T MSN Missense_Mutation p.R293C 0.40 deleterious(0) probably_damaging(0.98) TCGA-HU-A4GU-01 X 66765826 66765826 C T AR Missense_Mutation p.R280C 0.48 tolerated_low_confidence(0.06) probably_damaging(0.978) TCGA-HU-A4GU-01 X 71788641 71788641 G A HDAC8 Silent p.G86G 0.36 TCGA-HU-A4GU-01 X 75649600 75649600 C A MAGEE1 Missense_Mutation p.P426H 0.20 deleterious(0.04) benign(0.339) TCGA-HU-A4GU-01 X 83128395 83128395 T G CYLC1 Missense_Mutation p.S227A 0.20 deleterious(0.01) benign(0.198) TCGA-HU-A4GU-01 X 84510604 84510604 A C ZNF711 Missense_Mutation p.H140P 0.39 deleterious_low_confidence(0.05) possibly_damaging(0.462) TCGA-HU-A4GU-01 X 85404035 85404035 C G DACH2 Missense_Mutation p.I137M 0.46 deleterious(0) probably_damaging(0.997) TCGA-HU-A4GU-01 X 8565134 8565134 T G KAL1 Missense_Mutation p.K161T 0.82 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GU-01 X 96139929 96139929 G A RPA4 Missense_Mutation p.R207H 0.09 tolerated(0.34) benign(0.133) TCGA-HU-A4GU-01 X 96140040 96140040 T C RPA4 Missense_Mutation p.V244A 0.38 tolerated(0.19) benign(0.017) TCGA-HU-A4GX-01 10 103310572 103310573 - C BTRC Frame_Shift_Ins p.R594Pfs*27 0.26 TCGA-HU-A4GX-01 10 103868036 103868036 G A LDB1 Silent p.F350F 0.34 TCGA-HU-A4GX-01 10 105184857 105184857 C T PDCD11 Silent p.N960N 0.23 TCGA-HU-A4GX-01 10 105207116 105207116 C T CALHM2 Silent p.A255A 0.26 TCGA-HU-A4GX-01 10 105815734 105815734 C T COL17A1 Missense_Mutation p.R498H 0.24 unknown(0) TCGA-HU-A4GX-01 10 106075664 106075664 T C ITPRIP Missense_Mutation p.Q49R 0.21 tolerated(0.6) benign(0.001) TCGA-HU-A4GX-01 10 116417865 116417865 G A ABLIM1 Missense_Mutation p.S32L 0.29 deleterious_low_confidence(0.01) benign(0.124) TCGA-HU-A4GX-01 10 117884986 117884986 C T GFRA1 Silent p.S172S 0.18 TCGA-HU-A4GX-01 10 11994207 11994208 TT - UPF2 Frame_Shift_Del p.K964Rfs*7 0.20 TCGA-HU-A4GX-01 10 120795603 120795603 C T EIF3A Missense_Mutation p.R1366H 0.10 deleterious_low_confidence(0) unknown(0) TCGA-HU-A4GX-01 10 124152742 124152742 G A PLEKHA1 Missense_Mutation p.R9H 0.25 deleterious(0.03) probably_damaging(0.998) TCGA-HU-A4GX-01 10 125528005 125528005 C T CPXM2 Intron 0.35 TCGA-HU-A4GX-01 10 128192609 128192609 T C C10orf90 Missense_Mutation p.E387G 0.31 tolerated(0.11) benign(0.009) TCGA-HU-A4GX-01 10 129914169 129914169 G A MKI67 Missense_Mutation p.A168V 0.29 tolerated(0.36) benign(0.002) TCGA-HU-A4GX-01 10 129921193 129921193 A G MKI67 Missense_Mutation p.V80A 0.22 deleterious(0) probably_damaging(0.987) TCGA-HU-A4GX-01 10 134981025 134981025 G A KNDC1 Silent p.T81T 0.24 TCGA-HU-A4GX-01 10 16916494 16916494 C A CUBN Missense_Mutation p.G3039C 0.20 deleterious(0) probably_damaging(0.994) TCGA-HU-A4GX-01 10 16942694 16942694 G A CUBN Silent p.V2780V 0.15 TCGA-HU-A4GX-01 10 27322259 27322259 T - ANKRD26 Frame_Shift_Del p.K1234Nfs*19 0.17 TCGA-HU-A4GX-01 10 29754536 29754536 C T SVIL Missense_Mutation p.A2041T 0.38 deleterious(0.01) possibly_damaging(0.899) TCGA-HU-A4GX-01 10 31815671 31815671 C T ZEB1 Nonsense_Mutation p.R953* 0.16 TCGA-HU-A4GX-01 10 35351915 35351916 - A CUL2 Frame_Shift_Ins p.L84Ffs*10 0.24 TCGA-HU-A4GX-01 10 395292 395292 C T DIP2C Missense_Mutation p.V1030M 0.36 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GX-01 10 410407 410407 C T DIP2C Missense_Mutation p.G795D 0.18 tolerated(0.06) probably_damaging(0.985) TCGA-HU-A4GX-01 10 44112703 44112703 T C ZNF485 Silent p.H404H 0.29 TCGA-HU-A4GX-01 10 5014777 5014777 G A AKR1C1 Missense_Mutation p.V228M 0.23 tolerated(0.06) possibly_damaging(0.479) TCGA-HU-A4GX-01 10 5541225 5541225 G A CALML5 Silent p.D59D 0.30 TCGA-HU-A4GX-01 10 55568902 55568904 CTC - PCDH15 In_Frame_Del p.E570del 0.21 TCGA-HU-A4GX-01 10 55581859 55581859 T C PCDH15 Missense_Mutation p.Q1878R 0.31 tolerated_low_confidence(0.34) unknown(0) TCGA-HU-A4GX-01 10 62149221 62149221 T - ANK3 Frame_Shift_Del p.R26Gfs*21 0.25 TCGA-HU-A4GX-01 10 7214497 7214497 C T SFMBT2 Missense_Mutation p.R704Q 0.38 deleterious(0.02) benign(0.067) TCGA-HU-A4GX-01 10 73544152 73544152 G A CDH23 Missense_Mutation p.R1831Q 0.24 tolerated(0.31) possibly_damaging(0.776) TCGA-HU-A4GX-01 10 73767281 73767281 G A CHST3 Silent p.P164P 0.26 TCGA-HU-A4GX-01 10 75143004 75143004 G A ANXA7 Nonsense_Mutation p.R305* 0.17 TCGA-HU-A4GX-01 10 75335385 75335385 C - USP54 Frame_Shift_Del p.G11Vfs*17 0.14 TCGA-HU-A4GX-01 10 82269142 82269142 G A TSPAN14 Missense_Mutation p.R122Q 0.29 tolerated(1) benign(0.082) TCGA-HU-A4GX-01 10 88702923 88702923 C T MMRN2 Missense_Mutation p.V540M 0.34 tolerated(0.08) benign(0.225) TCGA-HU-A4GX-01 10 90682146 90682146 A - STAMBPL1 Frame_Shift_Del p.K405Rfs*21 0.50 TCGA-HU-A4GX-01 10 90699177 90699177 G A ACTA2 Intron 0.21 TCGA-HU-A4GX-01 10 95097652 95097652 A G MYOF Missense_Mutation p.W1453R 0.20 deleterious(0) possibly_damaging(0.874) TCGA-HU-A4GX-01 10 95107459 95107459 G A MYOF Silent p.V1388V 0.35 TCGA-HU-A4GX-01 10 95552602 95552602 C - LGI1 Frame_Shift_Del p.P204Qfs*36 0.23 TCGA-HU-A4GX-01 10 96997770 96997770 A G PDLIM1 Missense_Mutation p.V301A 0.26 deleterious(0) probably_damaging(0.99) TCGA-HU-A4GX-01 10 97423995 97423995 C T TCTN3 Silent p.Q551Q 0.22 TCGA-HU-A4GX-01 10 99329892 99329892 C T UBTD1 Intron 0.20 TCGA-HU-A4GX-01 11 1017323 1017324 AT - MUC6 Frame_Shift_Del p.Y1826Sfs*84 0.09 TCGA-HU-A4GX-01 11 101775632 101775632 C T ANGPTL5 Missense_Mutation p.E118K 0.15 deleterious(0.01) possibly_damaging(0.74) TCGA-HU-A4GX-01 11 101834251 101834251 C T KIAA1377 Missense_Mutation p.P829S 0.24 tolerated(1) benign(0.004) TCGA-HU-A4GX-01 11 108159786 108159786 A - ATM Frame_Shift_Del p.T1399Pfs*3 0.17 TCGA-HU-A4GX-01 11 108544239 108544239 A - DDX10 Frame_Shift_Del p.T80Hfs*2 0.19 TCGA-HU-A4GX-01 11 1090881 1090881 C T MUC2 Missense_Mutation p.T1259M 0.29 possibly_damaging(0.854) TCGA-HU-A4GX-01 11 113295137 113295137 G A DRD2 Silent p.A79A 0.26 TCGA-HU-A4GX-01 11 113700091 113700091 A - USP28 Intron 0.17 TCGA-HU-A4GX-01 11 113857318 113857318 G A HTR3A Missense_Mutation p.V268M 0.32 tolerated(0.09) benign(0.26) TCGA-HU-A4GX-01 11 113857683 113857683 C T HTR3A Silent p.I389I 0.20 TCGA-HU-A4GX-01 11 117261750 117261751 AA - CEP164 Frame_Shift_Del p.E701Gfs*9 0.17 TCGA-HU-A4GX-01 11 117780651 117780651 C T TMPRSS13 Missense_Mutation p.V327M 0.32 deleterious(0.02) possibly_damaging(0.742) TCGA-HU-A4GX-01 11 117869864 117869864 C T IL10RA Silent p.D415D 0.24 TCGA-HU-A4GX-01 11 12281437 12281437 C - MICAL2 Frame_Shift_Del p.P1111Qfs*20 0.15 TCGA-HU-A4GX-01 11 125301348 125301348 C T PKNOX2 3'UTR 0.33 TCGA-HU-A4GX-01 11 1267081 1267081 T C MUC5B Missense_Mutation p.W2991R 0.26 unknown(0) TCGA-HU-A4GX-01 11 13398205 13398205 C T ARNTL Silent p.G447G 0.28 TCGA-HU-A4GX-01 11 14502625 14502625 G A COPB1 Silent p.L326L 0.20 TCGA-HU-A4GX-01 11 15170767 15170767 C A INSC Missense_Mutation p.P63Q 0.31 tolerated_low_confidence(0.35) benign(0.011) TCGA-HU-A4GX-01 11 17482094 17482094 G A ABCC8 Silent p.L318L 0.25 TCGA-HU-A4GX-01 11 1774895 1774895 C T CTSD Silent p.S359S 0.29 TCGA-HU-A4GX-01 11 19256571 19256571 G A E2F8 Silent p.N162N 0.27 TCGA-HU-A4GX-01 11 30032940 30032940 C - KCNA4 Frame_Shift_Del p.G429Vfs*53 0.17 TCGA-HU-A4GX-01 11 32956281 32956281 C T QSER1 Silent p.D1030D 0.22 TCGA-HU-A4GX-01 11 33087372 33087375 ACAG - TCP11L1 Splice_Site p.X325_splice 0.21 TCGA-HU-A4GX-01 11 33565125 33565125 G A KIAA1549L Silent p.S375S 0.21 TCGA-HU-A4GX-01 11 3800453 3800453 A C NUP98 Missense_Mutation p.F37L 0.28 tolerated(0.09) unknown(0) TCGA-HU-A4GX-01 11 46098321 46098321 G T PHF21A Missense_Mutation p.A46D 0.16 deleterious(0.02) possibly_damaging(0.721) TCGA-HU-A4GX-01 11 4622048 4622048 G A TRIM68 Missense_Mutation p.R306C 0.18 tolerated(0.19) benign(0.015) TCGA-HU-A4GX-01 11 46394213 46394213 G - DGKZ Frame_Shift_Del p.G542Afs*17 0.25 TCGA-HU-A4GX-01 11 46407356 46407356 T A CHRM4 Missense_Mutation p.K251M 0.23 tolerated(0.08) probably_damaging(0.971) TCGA-HU-A4GX-01 11 47196853 47196853 A - ARFGAP2 Frame_Shift_Del p.R93Afs*43 0.26 TCGA-HU-A4GX-01 11 47357492 47357492 C T MYBPC3 Silent p.R891R 0.33 TCGA-HU-A4GX-01 11 47364636 47364636 C T MYBPC3 Silent p.A429A 0.25 TCGA-HU-A4GX-01 11 47365114 47365114 G A MYBPC3 Silent p.T384T 0.21 TCGA-HU-A4GX-01 11 47681799 47681799 T C AGBL2 Missense_Mutation p.R879G 0.34 deleterious_low_confidence(0) benign(0.126) TCGA-HU-A4GX-01 11 56057917 56057917 C T OR8H1 Missense_Mutation p.V208M 0.22 tolerated(0.22) benign(0.133) TCGA-HU-A4GX-01 11 56380954 56380954 C T OR5M1 Missense_Mutation p.V9M 0.24 deleterious(0.01) benign(0.073) TCGA-HU-A4GX-01 11 5701381 5701381 T C TRIM5 Silent p.V9V 0.23 TCGA-HU-A4GX-01 11 57244232 57244233 - G RTN4RL2 Frame_Shift_Ins p.Y374Lfs*4 0.29 TCGA-HU-A4GX-01 11 58207240 58207240 G A OR5B12 Missense_Mutation p.H129Y 0.20 deleterious_low_confidence(0.04) benign(0.057) TCGA-HU-A4GX-01 11 5968802 5968802 G A OR56A3 Missense_Mutation p.V76M 0.21 tolerated(0.08) benign(0.149) TCGA-HU-A4GX-01 11 60703479 60703479 C T TMEM132A Silent p.L725L 0.26 TCGA-HU-A4GX-01 11 60777348 60777348 T C CD6 Splice_Site p.X362_splice 0.07 TCGA-HU-A4GX-01 11 60892565 60892565 C A CD5 Silent p.S447S 0.20 TCGA-HU-A4GX-01 11 61112761 61112761 C - DAK Frame_Shift_Del p.P425Lfs*31 0.16 TCGA-HU-A4GX-01 11 62677864 62677864 T C CHRM1 Missense_Mutation p.S237G 0.29 tolerated(0.17) benign(0) TCGA-HU-A4GX-01 11 62760719 62760719 C T SLC22A8 Missense_Mutation p.G540D 0.10 tolerated_low_confidence(0.43) benign(0.004) TCGA-HU-A4GX-01 11 63357702 63357702 G A PLA2G16 Missense_Mutation p.P86L 0.16 deleterious(0) probably_damaging(0.993) TCGA-HU-A4GX-01 11 63883777 63883777 C T FLRT1 Missense_Mutation p.T13M 0.22 deleterious_low_confidence(0.01) unknown(0) TCGA-HU-A4GX-01 11 64367173 64367173 G A SLC22A12 Missense_Mutation p.G366S 0.27 deleterious(0) probably_damaging(0.99) TCGA-HU-A4GX-01 11 64390471 64390471 C A NRXN2 Missense_Mutation p.Q1309H 0.21 deleterious(0.01) probably_damaging(0.922) TCGA-HU-A4GX-01 11 64821729 64821729 C A NAALADL1 Missense_Mutation p.A329S 0.27 tolerated(0.84) benign(0.013) TCGA-HU-A4GX-01 11 65088586 65088586 C - CDC42EP2 Frame_Shift_Del p.P73Lfs*91 0.15 TCGA-HU-A4GX-01 11 65123482 65123482 G A TIGD3 Missense_Mutation p.R68H 0.28 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GX-01 11 65314282 65314283 - C LTBP3 Frame_Shift_Ins p.G740Rfs*51 0.28 TCGA-HU-A4GX-01 11 65361010 65361010 G A KCNK7 Silent p.L219L 0.36 TCGA-HU-A4GX-01 11 65403961 65403961 C A PCNXL3 Missense_Mutation p.P1898H 0.22 deleterious_low_confidence(0.04) possibly_damaging(0.893) TCGA-HU-A4GX-01 11 65422377 65422377 G T RELA Silent p.A376A 0.33 TCGA-HU-A4GX-01 11 6590002 6590002 C - DNHD1 Frame_Shift_Del p.T4259Pfs*33 0.27 TCGA-HU-A4GX-01 11 6592478 6592478 G A DNHD1 Missense_Mutation p.R4579H 0.25 benign(0.08) TCGA-HU-A4GX-01 11 66033664 66033664 C - KLC2 Frame_Shift_Del p.Q570Rfs*8 0.24 TCGA-HU-A4GX-01 11 66325170 66325170 C T CTD-3074O7.2 3'Flank 0.16 TCGA-HU-A4GX-01 11 6648207 6648207 G A DCHS1 Silent p.R2021R 0.16 TCGA-HU-A4GX-01 11 66483313 66483313 C T SPTBN2 Silent p.S99S 0.37 TCGA-HU-A4GX-01 11 67287382 67287382 G A CABP2 Silent p.S173S 0.25 TCGA-HU-A4GX-01 11 68181349 68181349 G A LRP5 Missense_Mutation p.R899H 0.29 deleterious(0) probably_damaging(0.99) TCGA-HU-A4GX-01 11 68483408 68483408 C A MTL5 Splice_Site p.X306_splice 0.29 TCGA-HU-A4GX-01 11 688355 688355 C A DEAF1 Missense_Mutation p.G165C 0.38 deleterious(0) possibly_damaging(0.614) TCGA-HU-A4GX-01 11 71183524 71183524 T C NADSYN1 Missense_Mutation p.M146T 0.24 tolerated(0.2) benign(0.128) TCGA-HU-A4GX-01 11 73570971 73570971 A G MRPL48 Missense_Mutation p.T131A 0.15 deleterious(0.05) probably_damaging(0.966) TCGA-HU-A4GX-01 11 73759343 73759343 G A C2CD3 Missense_Mutation p.T1801M 0.21 tolerated(0.72) benign(0.003) TCGA-HU-A4GX-01 11 73785543 73785543 T C C2CD3 Missense_Mutation p.H1569R 0.35 tolerated(0.64) benign(0.001) TCGA-HU-A4GX-01 11 75139513 75139513 G A KLHL35 Missense_Mutation p.A347V 0.30 deleterious(0.05) unknown(0) TCGA-HU-A4GX-01 11 76831954 76831954 C T CAPN5 Missense_Mutation p.R496W 0.21 deleterious(0.02) possibly_damaging(0.832) TCGA-HU-A4GX-01 11 76910654 76910654 T C MYO7A Missense_Mutation p.L1548P 0.28 tolerated(0.06) benign(0.102) TCGA-HU-A4GX-01 11 77413116 77413116 T - RSF1 Frame_Shift_Del p.K386Nfs*6 0.20 TCGA-HU-A4GX-01 11 77885584 77885584 G A KCTD21 Missense_Mutation p.T6M 0.30 deleterious(0) probably_damaging(0.985) TCGA-HU-A4GX-01 11 78380838 78380838 T C TENM4 Silent p.G2184G 0.27 TCGA-HU-A4GX-01 11 85346870 85346870 T C TMEM126B Intron 0.38 TCGA-HU-A4GX-01 11 85963259 85963259 T C EED Missense_Mutation p.F113L 0.34 deleterious(0) probably_damaging(0.963) TCGA-HU-A4GX-01 11 88911805 88911805 T C TYR Silent p.D228D 0.35 TCGA-HU-A4GX-01 11 89424667 89424667 C T FOLH1B RNA 0.27 TCGA-HU-A4GX-01 11 9171679 9171679 T - DENND5A Frame_Shift_Del p.K895Sfs*7 0.15 TCGA-HU-A4GX-01 12 106633826 106633826 C T CKAP4 Missense_Mutation p.S262N 0.38 deleterious(0) probably_damaging(0.933) TCGA-HU-A4GX-01 12 108051381 108051381 G - BTBD11 Frame_Shift_Del p.Y1068Mfs*86 0.09 TCGA-HU-A4GX-01 12 108931976 108931976 G A SART3 Nonsense_Mutation p.R356* 0.38 TCGA-HU-A4GX-01 12 109278816 109278816 G A DAO Missense_Mutation p.G12R 0.20 deleterious(0) probably_damaging(1) TCGA-HU-A4GX-01 12 110236479 110236479 G A TRPV4 Silent p.A364A 0.23 TCGA-HU-A4GX-01 12 110383069 110383069 C T GIT2 Missense_Mutation p.R576Q 0.30 tolerated(0.12) benign(0.006) TCGA-HU-A4GX-01 12 110819722 110819722 G A ANAPC7 Missense_Mutation p.R357W 0.38 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GX-01 12 111352053 111352053 T C MYL2 Missense_Mutation p.K71E 0.16 tolerated(0.14) benign(0.032) TCGA-HU-A4GX-01 12 111733145 111733145 A G CUX2 Missense_Mutation p.Q190R 0.19 deleterious(0) benign(0.293) TCGA-HU-A4GX-01 12 111907939 111907939 C - ATXN2 Frame_Shift_Del p.A1097Lfs*109 0.27 TCGA-HU-A4GX-01 12 11244841 11244841 A - TAS2R43 5'UTR 0.16 TCGA-HU-A4GX-01 12 112690349 112690349 G - HECTD4 Intron 0.29 TCGA-HU-A4GX-01 12 113745598 113745598 C T SLC8B1 Missense_Mutation p.A437T 0.19 deleterious(0) possibly_damaging(0.889) TCGA-HU-A4GX-01 12 116399155 116399155 C T MED13L Silent p.P2183P 0.15 TCGA-HU-A4GX-01 12 117914383 117914383 C T KSR2 Missense_Mutation p.R823H 0.52 deleterious(0.01) possibly_damaging(0.512) TCGA-HU-A4GX-01 12 118199074 118199074 G A KSR2 Missense_Mutation p.S243L 0.48 tolerated(0.23) benign(0) TCGA-HU-A4GX-01 12 120662036 120662036 G - PXN Frame_Shift_Del p.P53Rfs*14 0.32 TCGA-HU-A4GX-01 12 120884195 120884195 G A TRIAP1 5'UTR 0.21 TCGA-HU-A4GX-01 12 122018740 122018740 T - KDM2B Frame_Shift_Del p.K26Rfs*81 0.17 TCGA-HU-A4GX-01 12 122079120 122079120 G A ORAI1 Silent p.S161S 0.37 TCGA-HU-A4GX-01 12 122092338 122092338 C T MORN3 Missense_Mutation p.G102D 0.60 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GX-01 12 123829936 123829936 C T SBNO1 Missense_Mutation p.R140Q 0.35 tolerated_low_confidence(0.24) benign(0.003) TCGA-HU-A4GX-01 12 124139506 124139506 T C GTF2H3 Silent p.Y174Y 0.17 TCGA-HU-A4GX-01 12 124274576 124274577 - C DNAH10 Frame_Shift_Ins p.M516Hfs*7 0.19 TCGA-HU-A4GX-01 12 125449495 125449495 G A DHX37 Missense_Mutation p.A598V 0.29 deleterious(0.03) probably_damaging(0.964) TCGA-HU-A4GX-01 12 125834469 125834469 G A TMEM132B Missense_Mutation p.R175Q 0.22 tolerated(0.19) possibly_damaging(0.612) TCGA-HU-A4GX-01 12 12630702 12630702 C T DUSP16 Missense_Mutation p.V355M 0.13 tolerated(0.24) benign(0.005) TCGA-HU-A4GX-01 12 129442187 129442187 A C GLT1D1 Missense_Mutation p.Q213P 0.38 deleterious(0) benign(0.293) TCGA-HU-A4GX-01 12 130647800 130647800 G A FZD10 Missense_Mutation p.A105T 0.22 deleterious(0.01) probably_damaging(0.997) TCGA-HU-A4GX-01 12 132475230 132475230 C T EP400 Missense_Mutation p.A867V 0.12 unknown(0) TCGA-HU-A4GX-01 12 132688221 132688221 G A GALNT9 5'UTR 0.20 TCGA-HU-A4GX-01 12 133363116 133363118 TCT - GOLGA3 In_Frame_Del p.K977del 0.12 TCGA-HU-A4GX-01 12 133428216 133428216 C T CHFR Missense_Mutation p.A506T 0.37 tolerated(0.08) benign(0.251) TCGA-HU-A4GX-01 12 14996170 14996170 T C ART4 5'UTR 0.56 TCGA-HU-A4GX-01 12 15035053 15035053 T - MGP 3'UTR 0.23 TCGA-HU-A4GX-01 12 1755054 1755054 G A WNT5B Missense_Mutation p.R239H 0.28 deleterious(0.03) probably_damaging(0.999) TCGA-HU-A4GX-01 12 18854570 18854570 C A PLCZ1 Intron 0.17 TCGA-HU-A4GX-01 12 22035726 22035726 C T ABCC9 Missense_Mutation p.A665T 0.17 tolerated(0.87) benign(0.002) TCGA-HU-A4GX-01 12 22826468 22826468 T C ETNK1 Silent p.D362D 0.38 TCGA-HU-A4GX-01 12 2595422 2595422 A G CACNA1C Missense_Mutation p.I304V 0.27 tolerated(0.75) benign(0.001) TCGA-HU-A4GX-01 12 2691997 2691997 G A CACNA1C Missense_Mutation p.G705R 0.38 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GX-01 12 2973571 2973571 G A FOXM1 Missense_Mutation p.S394L 0.21 deleterious(0) possibly_damaging(0.755) TCGA-HU-A4GX-01 12 31244761 31244761 G A DDX11 Missense_Mutation p.D400N 0.28 deleterious(0) probably_damaging(1) TCGA-HU-A4GX-01 12 31254910 31254912 GAA - DDX11 In_Frame_Del p.K734del 0.29 TCGA-HU-A4GX-01 12 3128327 3128327 C T TEAD4 Missense_Mutation p.P192S 0.14 tolerated(0.17) benign(0.035) TCGA-HU-A4GX-01 12 31613305 31613305 G A DENND5B Silent p.R305R 0.19 TCGA-HU-A4GX-01 12 39716468 39716468 A G KIF21A Splice_Site p.X1224_splice 0.11 TCGA-HU-A4GX-01 12 432249 432249 T - KDM5A Frame_Shift_Del p.D759Ifs*2 0.29 TCGA-HU-A4GX-01 12 48723373 48723373 C A H1FNT Missense_Mutation p.P100H 0.44 tolerated(0.08) probably_damaging(0.979) TCGA-HU-A4GX-01 12 49176859 49176859 C T ADCY6 Missense_Mutation p.R120H 0.41 tolerated(0.14) benign(0.001) TCGA-HU-A4GX-01 12 49421896 49421896 G A KMT2D Missense_Mutation p.A4804V 0.43 unknown(0) TCGA-HU-A4GX-01 12 49427112 49427112 A - KMT2D Frame_Shift_Del p.Q3793Nfs*37 0.27 TCGA-HU-A4GX-01 12 49427477 49427477 G A KMT2D Missense_Mutation p.P3671S 0.23 probably_damaging(0.986) TCGA-HU-A4GX-01 12 49445149 49445149 G - KMT2D Frame_Shift_Del p.Q773Sfs*157 0.16 TCGA-HU-A4GX-01 12 51125312 51125312 G A DIP2B Missense_Mutation p.V1268M 0.13 tolerated(0.13) benign(0.01) TCGA-HU-A4GX-01 12 52629019 52629019 C T KRT7 Silent p.S135S 0.42 TCGA-HU-A4GX-01 12 52685196 52685196 G A KRT81 Silent p.C18C 0.19 TCGA-HU-A4GX-01 12 53012262 53012262 C - KRT73 Frame_Shift_Del p.G16Afs*102 0.20 TCGA-HU-A4GX-01 12 53044122 53044124 CTT - KRT2 Splice_Site p.X267_splice 0.23 TCGA-HU-A4GX-01 12 53451887 53451887 G A TENC1 Splice_Site p.X375_splice 0.40 TCGA-HU-A4GX-01 12 53468510 53468510 G A SPRYD3 Missense_Mutation p.R144W 0.33 deleterious(0) possibly_damaging(0.906) TCGA-HU-A4GX-01 12 53470944 53470944 T C SPRYD3 Missense_Mutation p.Y42C 0.28 tolerated(0.18) possibly_damaging(0.667) TCGA-HU-A4GX-01 12 56515714 56515714 A G ZC3H10 3'UTR 0.44 TCGA-HU-A4GX-01 12 56872956 56872956 G A GLS2 Silent p.S138S 0.15 TCGA-HU-A4GX-01 12 57554728 57554728 C T LRP1 Missense_Mutation p.R678W 0.16 benign(0.011) TCGA-HU-A4GX-01 12 57556223 57556223 C - LRP1 Frame_Shift_Del p.T778Lfs*2 0.17 TCGA-HU-A4GX-01 12 57595682 57595682 G T LRP1 Nonsense_Mutation p.E3530* 0.27 TCGA-HU-A4GX-01 12 6128813 6128813 C T VWF Silent p.L1257L 0.21 TCGA-HU-A4GX-01 12 63195674 63195674 G - PPM1H Frame_Shift_Del p.T227Hfs*30 0.14 TCGA-HU-A4GX-01 12 6566754 6566754 C T TAPBPL Missense_Mutation p.R250W 0.18 deleterious(0) probably_damaging(0.997) TCGA-HU-A4GX-01 12 6634802 6634802 G A NCAPD2 Silent p.L756L 0.09 TCGA-HU-A4GX-01 12 6861111 6861111 C T MLF2 Missense_Mutation p.A54T 0.38 tolerated(0.35) benign(0.006) TCGA-HU-A4GX-01 12 68647066 68647066 G A IL22 Missense_Mutation p.R55C 0.25 deleterious(0.02) probably_damaging(0.97) TCGA-HU-A4GX-01 12 70946688 70946688 G A PTPRB Silent p.A1752A 0.21 TCGA-HU-A4GX-01 12 72038781 72038781 T - ZFC3H1 Frame_Shift_Del p.K385Nfs*9 0.16 TCGA-HU-A4GX-01 12 78512068 78512068 A - NAV3 Frame_Shift_Del p.T1012Hfs*18 0.23 TCGA-HU-A4GX-01 12 8075523 8075523 A G SLC2A3 Missense_Mutation p.V389A 0.18 deleterious(0) probably_damaging(0.974) TCGA-HU-A4GX-01 12 85285889 85285889 T - SLC6A15 Frame_Shift_Del p.N4Ifs*5 0.19 TCGA-HU-A4GX-01 12 86373300 86373300 G A MGAT4C Nonsense_Mutation p.Q402* 0.44 TCGA-HU-A4GX-01 13 100617886 100617886 C T ZIC5 Silent p.P579P 0.15 TCGA-HU-A4GX-01 13 100635354 100635354 C T ZIC2 Missense_Mutation p.R346C 0.26 deleterious(0) possibly_damaging(0.789) TCGA-HU-A4GX-01 13 102220101 102220101 G T ITGBL1 Missense_Mutation p.G123V 0.28 deleterious(0) probably_damaging(1) TCGA-HU-A4GX-01 13 102220102 102220102 G T ITGBL1 Silent p.G123G 0.27 TCGA-HU-A4GX-01 13 102568809 102568809 G A FGF14 Intron 0.25 TCGA-HU-A4GX-01 13 103418901 103418901 C T TEX30 Missense_Mutation p.M178I 0.23 tolerated(0.14) possibly_damaging(0.813) TCGA-HU-A4GX-01 13 109540729 109540729 G T MYO16 Missense_Mutation p.R499S 0.16 tolerated(1) benign(0.024) TCGA-HU-A4GX-01 13 111114502 111114502 A - COL4A2 Frame_Shift_Del p.G548Efs*23 0.17 TCGA-HU-A4GX-01 13 111118411 111118411 T C COL4A2 Splice_Site p.X680_splice 0.13 TCGA-HU-A4GX-01 13 114322333 114322333 C T GRK1 Missense_Mutation p.A211V 0.28 deleterious(0.02) probably_damaging(0.991) TCGA-HU-A4GX-01 13 114535749 114535749 G A GAS6 Intron 0.27 TCGA-HU-A4GX-01 13 21013765 21013765 C A CRYL1 Missense_Mutation p.L135F 0.23 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-HU-A4GX-01 13 25457502 25457502 C T CENPJ Missense_Mutation p.G1277D 0.19 deleterious(0) probably_damaging(0.997) TCGA-HU-A4GX-01 13 28240013 28240013 C T POLR1D Nonsense_Mutation p.R98* 0.20 TCGA-HU-A4GX-01 13 32808878 32808878 G T FRY Nonsense_Mutation p.E1899* 0.27 TCGA-HU-A4GX-01 13 32868598 32868598 G A FRY Missense_Mutation p.A2892T 0.25 tolerated(0.61) benign(0.001) TCGA-HU-A4GX-01 13 35644128 35644128 T C NBEA Silent p.S441S 0.35 TCGA-HU-A4GX-01 13 36050375 36050375 C T MAB21L1 5'UTR 0.21 TCGA-HU-A4GX-01 13 36125104 36125104 A - NBEA Frame_Shift_Del p.V2250Lfs*10 0.23 TCGA-HU-A4GX-01 13 36445472 36445472 G A DCLK1 Nonsense_Mutation p.R277* 0.27 TCGA-HU-A4GX-01 13 38144790 38144790 T - POSTN Frame_Shift_Del p.K732Nfs*13 0.25 TCGA-HU-A4GX-01 13 38166277 38166277 A G POSTN Silent p.P81P 0.21 TCGA-HU-A4GX-01 13 39612621 39612621 A C NHLRC3 5'UTR 0.32 TCGA-HU-A4GX-01 13 39612627 39612627 A T NHLRC3 5'UTR 0.35 TCGA-HU-A4GX-01 13 41768449 41768449 C T KBTBD7 5'UTR 0.25 TCGA-HU-A4GX-01 13 42877077 42877077 C T AKAP11 Missense_Mutation p.P1399S 0.20 tolerated(0.14) benign(0.149) TCGA-HU-A4GX-01 13 47315993 47315993 G A LRCH1 3'UTR 0.27 TCGA-HU-A4GX-01 13 52439693 52439693 A - CCDC70 Frame_Shift_Del p.I62* 0.18 TCGA-HU-A4GX-01 13 53261959 53261959 A - SUGT1 Frame_Shift_Del p.K364Sfs*4 0.21 TCGA-HU-A4GX-01 13 75936260 75936260 C T TBC1D4 Missense_Mutation p.E328K 0.40 tolerated(0.13) possibly_damaging(0.487) TCGA-HU-A4GX-01 13 76393555 76393555 A - LMO7 Frame_Shift_Del p.S466Vfs*69 0.20 TCGA-HU-A4GX-01 13 96684171 96684172 CA - UGGT2 Frame_Shift_Del p.V71Afs*7 0.12 TCGA-HU-A4GX-01 13 99047712 99047712 C - FARP1 Frame_Shift_Del p.P467Rfs*8 0.27 TCGA-HU-A4GX-01 14 102901068 102901068 T - TECPR2 Frame_Shift_Del p.C640Vfs*6 0.23 TCGA-HU-A4GX-01 14 103390133 103390133 C T AMN Silent p.C43C 0.25 TCGA-HU-A4GX-01 14 105353025 105353025 G T CEP170B Missense_Mutation p.G817W 0.32 deleterious(0.02) probably_damaging(0.942) TCGA-HU-A4GX-01 14 105609917 105609917 G A JAG2 Missense_Mutation p.A1048V 0.42 tolerated(0.12) probably_damaging(0.993) TCGA-HU-A4GX-01 14 106208053 106208053 G A IGHG1 Silent p.C250C 0.24 TCGA-HU-A4GX-01 14 106478284 106478284 C T IGHV4-4 Silent p.Q58Q 0.51 TCGA-HU-A4GX-01 14 20389294 20389294 T - OR4K5 Frame_Shift_Del p.C179Vfs*20 0.21 TCGA-HU-A4GX-01 14 20979078 20979078 G A RNASE10 Missense_Mutation p.A150T 0.25 deleterious(0.01) possibly_damaging(0.89) TCGA-HU-A4GX-01 14 21249933 21249933 T C RNASE6 Silent p.P25P 0.19 TCGA-HU-A4GX-01 14 21623789 21623789 G T OR5AU1 Silent p.T132T 0.24 TCGA-HU-A4GX-01 14 22279960 22279960 C T TRAV9-1 Missense_Mutation p.P50L 0.21 deleterious(0.05) benign(0.229) TCGA-HU-A4GX-01 14 23312937 23312937 C T MMP14 Missense_Mutation p.P290L 0.24 deleterious(0.02) possibly_damaging(0.649) TCGA-HU-A4GX-01 14 23344969 23344969 G A LRP10 Missense_Mutation p.G271D 0.23 tolerated(0.82) probably_damaging(0.968) TCGA-HU-A4GX-01 14 23517514 23517514 G - CDH24 Frame_Shift_Del p.P712Rfs*129 0.26 TCGA-HU-A4GX-01 14 23883076 23883076 G A MYH7 Silent p.S1894S 0.26 TCGA-HU-A4GX-01 14 23888767 23888767 G A MYH7 Missense_Mutation p.R1260W 0.36 deleterious(0) probably_damaging(0.978) TCGA-HU-A4GX-01 14 23945575 23945575 G A NGDN Silent p.R224R 0.26 TCGA-HU-A4GX-01 14 24424347 24424347 G T DHRS4 Missense_Mutation p.G78W 0.22 deleterious(0.01) probably_damaging(0.927) TCGA-HU-A4GX-01 14 24738901 24738901 C T RABGGTA Splice_Site p.X143_splice 0.41 TCGA-HU-A4GX-01 14 24909373 24909375 CTT - SDR39U1 In_Frame_Del p.K266del 0.29 TCGA-HU-A4GX-01 14 24976674 24976674 G A CMA1 Missense_Mutation p.R33C 0.27 deleterious(0.03) benign(0.327) TCGA-HU-A4GX-01 14 25077608 25077608 G A GZMH Silent p.I22I 0.22 TCGA-HU-A4GX-01 14 26917308 26917309 - T NOVA1 Frame_Shift_Ins p.G461Rfs*35 0.16 TCGA-HU-A4GX-01 14 30068264 30068264 A C PRKD1 Missense_Mutation p.V712G 0.29 deleterious(0.01) possibly_damaging(0.464) TCGA-HU-A4GX-01 14 31067763 31067763 G T G2E3 Missense_Mutation p.R237I 0.26 tolerated(0.08) possibly_damaging(0.817) TCGA-HU-A4GX-01 14 33293352 33293352 G A AKAP6 Silent p.S2111S 0.27 TCGA-HU-A4GX-01 14 36942999 36942999 C T SFTA3 3'UTR 0.36 TCGA-HU-A4GX-01 14 39644471 39644471 C T PNN 5'UTR 0.27 TCGA-HU-A4GX-01 14 42356779 42356779 A G LRFN5 Silent p.A317A 0.28 TCGA-HU-A4GX-01 14 52507367 52507367 A G NID2 Splice_Site p.X676_splice 0.22 TCGA-HU-A4GX-01 14 55836376 55836376 C T ATG14 Silent p.S480S 0.30 TCGA-HU-A4GX-01 14 61190676 61190676 C A SIX4 Silent p.A39A 0.19 TCGA-HU-A4GX-01 14 62551094 62551094 C T SYT16 Nonsense_Mutation p.R539* 0.24 TCGA-HU-A4GX-01 14 64430701 64430701 T C SYNE2 Missense_Mutation p.Y325H 0.59 possibly_damaging(0.887) TCGA-HU-A4GX-01 14 73720653 73720653 C T PAPLN Missense_Mutation p.P402L 0.20 tolerated(0.17) benign(0.004) TCGA-HU-A4GX-01 14 74411229 74411229 A G FAM161B Missense_Mutation p.I308T 0.26 tolerated(0.33) benign(0.295) TCGA-HU-A4GX-01 14 75264709 75264709 C T YLPM1 Silent p.S903S 0.31 TCGA-HU-A4GX-01 14 77978575 77978575 C A SPTLC2 3'UTR 0.23 TCGA-HU-A4GX-01 14 78397931 78397931 G A ADCK1 Missense_Mutation p.R426H 0.30 deleterious(0) probably_damaging(0.997) TCGA-HU-A4GX-01 14 86088481 86088481 G A FLRT2 Missense_Mutation p.R208H 0.22 deleterious(0.01) possibly_damaging(0.763) TCGA-HU-A4GX-01 14 88652360 88652360 C T KCNK10 Missense_Mutation p.R384Q 0.30 tolerated(0.83) benign(0.013) TCGA-HU-A4GX-01 14 88658653 88658653 C G KCNK10 Missense_Mutation p.K261N 0.24 deleterious(0.03) probably_damaging(0.985) TCGA-HU-A4GX-01 14 93760390 93760390 T C BTBD7 Missense_Mutation p.T326A 0.24 deleterious(0.04) benign(0.001) TCGA-HU-A4GX-01 14 95090250 95090250 C T SERPINA3 3'UTR 0.32 TCGA-HU-A4GX-01 15 101433160 101433160 C T ALDH1A3 Silent p.V162V 0.17 TCGA-HU-A4GX-01 15 101602777 101602777 A C LRRK1 Splice_Site p.X1600_splice 0.29 TCGA-HU-A4GX-01 15 23811710 23811710 C A MKRN3 Missense_Mutation p.L261I 0.20 tolerated(0.1) benign(0.042) TCGA-HU-A4GX-01 15 24921241 24921241 G T NPAP1 Missense_Mutation p.R76L 0.15 deleterious(0.01) benign(0.071) TCGA-HU-A4GX-01 15 25223679 25223679 A G SNRPN 3'UTR 0.23 TCGA-HU-A4GX-01 15 25438298 25438298 G T SNORD115-11 3'Flank 0.25 TCGA-HU-A4GX-01 15 25488671 25488671 C A SNORD115-40 5'Flank 0.15 TCGA-HU-A4GX-01 15 28231740 28231740 G T OCA2 Missense_Mutation p.A411D 0.20 deleterious(0) probably_damaging(1) TCGA-HU-A4GX-01 15 28366498 28366498 G A HERC2 Silent p.R4422R 0.20 TCGA-HU-A4GX-01 15 28377925 28377925 G A HERC2 Silent p.V4094V 0.21 TCGA-HU-A4GX-01 15 28419605 28419605 C T HERC2 Silent p.T3331T 0.23 TCGA-HU-A4GX-01 15 28501349 28501349 C T HERC2 Missense_Mutation p.V878M 0.26 probably_damaging(0.962) TCGA-HU-A4GX-01 15 28901142 28901142 T A HERC2P9 RNA 0.22 TCGA-HU-A4GX-01 15 29997900 29997900 C T TJP1 Missense_Mutation p.A1634T 0.26 deleterious(0) probably_damaging(0.969) TCGA-HU-A4GX-01 15 31355443 31355443 G A TRPM1 Silent p.N298N 0.20 TCGA-HU-A4GX-01 15 34549916 34549916 A - SLC12A6 Frame_Shift_Del p.L206Yfs*28 0.26 TCGA-HU-A4GX-01 15 40754413 40754413 C T BAHD1 Missense_Mutation p.R579C 0.25 deleterious(0) probably_damaging(0.994) TCGA-HU-A4GX-01 15 41247666 41247666 C T CHAC1 Silent p.Y163Y 0.21 TCGA-HU-A4GX-01 15 41276449 41276449 G A INO80 Silent p.D1341D 0.15 TCGA-HU-A4GX-01 15 41795386 41795386 G T ITPKA 3'UTR 0.26 TCGA-HU-A4GX-01 15 41864674 41864674 T G TYRO3 Missense_Mutation p.L596R 0.24 deleterious(0.01) probably_damaging(0.98) TCGA-HU-A4GX-01 15 42110453 42110453 T - MAPKBP1 Frame_Shift_Del p.F688Lfs*22 0.21 TCGA-HU-A4GX-01 15 43531380 43531380 T C TGM5 Silent p.T362T 0.23 TCGA-HU-A4GX-01 15 44198148 44198148 C T FRMD5 Silent p.A143A 0.32 TCGA-HU-A4GX-01 15 44951449 44951449 T C SPG11 Silent p.L165L 0.21 TCGA-HU-A4GX-01 15 45003781 45003784 CTCT - B2M Frame_Shift_Del p.S14Ffs*29 0.24 TCGA-HU-A4GX-01 15 51514698 51514698 C T CYP19A1 Missense_Mutation p.R159H 0.35 deleterious(0.05) benign(0.022) TCGA-HU-A4GX-01 15 51689791 51689791 C T GLDN Silent p.C271C 0.27 TCGA-HU-A4GX-01 15 52497392 52497392 G A MYO5C Intron 0.26 TCGA-HU-A4GX-01 15 52668596 52668596 G A MYO5A Missense_Mutation p.R790W 0.33 deleterious(0) possibly_damaging(0.844) TCGA-HU-A4GX-01 15 60641357 60641357 C T ANXA2 Missense_Mutation p.V311I 0.17 tolerated(0.1) benign(0.035) TCGA-HU-A4GX-01 15 60741880 60741880 G A NARG2 Missense_Mutation p.T429I 0.25 deleterious(0.02) benign(0.006) TCGA-HU-A4GX-01 15 63889654 63889656 CTC - FBXL22 In_Frame_Del p.S22del 0.25 TCGA-HU-A4GX-01 15 65702608 65702608 G A IGDCC4 Silent p.N157N 0.28 TCGA-HU-A4GX-01 15 65916520 65916520 C T SLC24A1 Silent p.I34I 0.27 TCGA-HU-A4GX-01 15 66607510 66607510 C T DIS3L Silent p.D317D 0.22 TCGA-HU-A4GX-01 15 66618407 66618407 G T DIS3L Missense_Mutation p.A636S 0.24 tolerated(0.06) possibly_damaging(0.732) TCGA-HU-A4GX-01 15 68599992 68599992 G A ITGA11 Missense_Mutation p.R1073W 0.21 deleterious(0) possibly_damaging(0.462) TCGA-HU-A4GX-01 15 69011069 69011069 G A CORO2B Missense_Mutation p.A334T 0.14 tolerated(0.21) benign(0.005) TCGA-HU-A4GX-01 15 69328220 69328222 CTC - NOX5 In_Frame_Del p.L380del 0.24 TCGA-HU-A4GX-01 15 69728003 69728003 C T KIF23 Nonsense_Mutation p.R389* 0.22 TCGA-HU-A4GX-01 15 71272472 71272473 - A LRRC49 Frame_Shift_Ins p.E326Rfs*10 0.28 TCGA-HU-A4GX-01 15 71952908 71952908 G A THSD4 Missense_Mutation p.V398M 0.30 tolerated(0.28) benign(0.02) TCGA-HU-A4GX-01 15 74326969 74326969 G T PML Intron 0.38 TCGA-HU-A4GX-01 15 75108770 75108770 C T LMAN1L Silent p.A111A 0.28 TCGA-HU-A4GX-01 15 78762935 78762935 T - IREB2 Frame_Shift_Del p.F232Lfs*13 0.17 TCGA-HU-A4GX-01 15 78825552 78825552 G A HYKK Missense_Mutation p.C221Y 0.23 deleterious(0) probably_damaging(0.98) TCGA-HU-A4GX-01 15 79051796 79051796 G - ADAMTS7 Frame_Shift_Del p.S1677Pfs*38 0.22 TCGA-HU-A4GX-01 15 80478482 80478482 G - FAH Frame_Shift_Del p.D399Mfs*63 0.14 TCGA-HU-A4GX-01 15 81218066 81218066 G A KIAA1199 Missense_Mutation p.R797H 0.33 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GX-01 15 83328222 83328223 GA - AP3B2 3'UTR 0.35 TCGA-HU-A4GX-01 15 90622982 90622982 C T ZNF710 Missense_Mutation p.A639V 0.20 tolerated_low_confidence(0.12) benign(0.005) TCGA-HU-A4GX-01 15 91433191 91433191 C T FES Missense_Mutation p.R350W 0.27 deleterious(0.01) probably_damaging(0.945) TCGA-HU-A4GX-01 15 91769717 91769717 G A SV2B Missense_Mutation p.R75Q 0.25 tolerated(0.06) benign(0.356) TCGA-HU-A4GX-01 16 10551245 10551245 C T ATF7IP2 Missense_Mutation p.A404V 0.17 deleterious(0.01) benign(0.046) TCGA-HU-A4GX-01 16 10721647 10721647 G A TEKT5 Silent p.N417N 0.25 TCGA-HU-A4GX-01 16 10788457 10788457 G - TEKT5 Frame_Shift_Del p.H92Tfs*24 0.18 TCGA-HU-A4GX-01 16 12618643 12618643 G A SNX29 Missense_Mutation p.E755K 0.26 tolerated(0.2) possibly_damaging(0.654) TCGA-HU-A4GX-01 16 15178534 15178534 G A RRN3 Silent p.H187H 0.17 TCGA-HU-A4GX-01 16 1576692 1576692 C T IFT140 Silent p.A835A 0.33 TCGA-HU-A4GX-01 16 16146642 16146642 C A ABCC1 Missense_Mutation p.A481D 0.21 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GX-01 16 19127432 19127432 C A ITPRIPL2 3'UTR 0.23 TCGA-HU-A4GX-01 16 20673143 20673143 C T ACSM1 Missense_Mutation p.R322Q 0.21 deleterious(0.04) benign(0.426) TCGA-HU-A4GX-01 16 2098716 2098716 A - TSC2 Frame_Shift_Del p.K34Nfs*12 0.22 TCGA-HU-A4GX-01 16 2156666 2156666 G A PKD1 Missense_Mutation p.R2408C 0.33 possibly_damaging(0.892) TCGA-HU-A4GX-01 16 22274454 22274454 C T EEF2K Silent p.S441S 0.23 TCGA-HU-A4GX-01 16 2233682 2233682 G T CASKIN1 Missense_Mutation p.L532I 0.27 possibly_damaging(0.64) TCGA-HU-A4GX-01 16 2293329 2293329 C T ECI1 Missense_Mutation p.A185T 0.24 deleterious(0.01) possibly_damaging(0.888) TCGA-HU-A4GX-01 16 23499987 23499987 T C GGA2 Silent p.L173L 0.13 TCGA-HU-A4GX-01 16 2374467 2374467 C T ABCA3 Missense_Mutation p.V129M 0.42 tolerated(0.08) possibly_damaging(0.85) TCGA-HU-A4GX-01 16 28515226 28515226 G A IL27 Silent p.S59S 0.26 TCGA-HU-A4GX-01 16 2868703 2868703 G T PRSS21 Missense_Mutation p.G95W 0.26 deleterious(0.01) probably_damaging(0.962) TCGA-HU-A4GX-01 16 28734621 28734621 C T EIF3C Missense_Mutation p.R305W 0.12 deleterious(0) benign(0.35) TCGA-HU-A4GX-01 16 28911961 28911961 G A ATP2A1 Silent p.T608T 0.14 TCGA-HU-A4GX-01 16 29821441 29821441 G T MAZ 3'UTR 0.24 TCGA-HU-A4GX-01 16 30392536 30392536 C A SEPT1 Missense_Mutation p.R162L 0.23 benign(0.363) TCGA-HU-A4GX-01 16 30723028 30723028 G A SRCAP Silent p.A485A 0.27 TCGA-HU-A4GX-01 16 30958185 30958185 G A FBXL19 Missense_Mutation p.A608T 0.25 tolerated(0.07) possibly_damaging(0.884) TCGA-HU-A4GX-01 16 3097522 3097522 C T MMP25 Missense_Mutation p.A69V 0.25 deleterious(0) probably_damaging(1) TCGA-HU-A4GX-01 16 31096300 31096300 C T PRSS53 Silent p.P360P 0.31 TCGA-HU-A4GX-01 16 31194048 31194049 - T FUS Intron 0.22 TCGA-HU-A4GX-01 16 31332935 31332935 T C ITGAM Silent p.D664D 0.23 TCGA-HU-A4GX-01 16 338064 338064 C T AXIN1 3'UTR 0.27 TCGA-HU-A4GX-01 16 3458560 3458560 C A ZNF174 Missense_Mutation p.L289I 0.19 tolerated(0.14) benign(0.133) TCGA-HU-A4GX-01 16 3486537 3486537 G A ZNF597 Nonsense_Mutation p.Q388* 0.17 TCGA-HU-A4GX-01 16 3707055 3707055 C T DNASE1 Silent p.A164A 0.16 TCGA-HU-A4GX-01 16 3808953 3808953 G A CREBBP Missense_Mutation p.R1091C 0.19 unknown(0) TCGA-HU-A4GX-01 16 4431239 4431239 C T VASN Missense_Mutation p.R121C 0.18 deleterious(0.05) possibly_damaging(0.809) TCGA-HU-A4GX-01 16 4732864 4732866 GAG - MGRN1 In_Frame_Del p.E468del 0.21 TCGA-HU-A4GX-01 16 47730354 47730354 G A PHKB Silent p.T986T 0.17 TCGA-HU-A4GX-01 16 4837628 4837628 A G SEPT12 Missense_Mutation p.S7P 0.20 deleterious(0.01) unknown(0) TCGA-HU-A4GX-01 16 48595821 48595821 A G N4BP1 Missense_Mutation p.S245P 0.13 deleterious(0) possibly_damaging(0.501) TCGA-HU-A4GX-01 16 49671871 49671871 G A ZNF423 Missense_Mutation p.R398W 0.22 deleterious(0.02) possibly_damaging(0.586) TCGA-HU-A4GX-01 16 5106074 5106074 C T C16orf89 Missense_Mutation p.R248Q 0.24 tolerated(0.27) benign(0.04) TCGA-HU-A4GX-01 16 51185147 51185147 C T SALL1 Silent p.S2S 0.44 TCGA-HU-A4GX-01 16 55362834 55362834 G A IRX6 Missense_Mutation p.R315H 0.34 tolerated(0.24) benign(0.001) TCGA-HU-A4GX-01 16 57756637 57756637 G A CCDC135 Missense_Mutation p.R431H 0.25 tolerated(0.06) benign(0.171) TCGA-HU-A4GX-01 16 57931400 57931400 G A CNGB1 Missense_Mutation p.A1048V 0.32 deleterious(0) probably_damaging(0.957) TCGA-HU-A4GX-01 16 58319950 58319950 G A PRSS54 Missense_Mutation p.A138V 0.30 deleterious(0.02) probably_damaging(0.93) TCGA-HU-A4GX-01 16 67418824 67418824 A - LRRC36 Frame_Shift_Del p.G701Vfs*41 0.14 TCGA-HU-A4GX-01 16 67433331 67433331 A G ZDHHC1 Missense_Mutation p.C153R 0.22 deleterious(0) probably_damaging(1) TCGA-HU-A4GX-01 16 67682131 67682131 C - RLTPR Frame_Shift_Del p.P418Rfs*94 0.29 TCGA-HU-A4GX-01 16 69200969 69200969 T - CIRH1A Intron 0.22 TCGA-HU-A4GX-01 16 69373463 69373463 G A COG8 5'UTR 0.24 TCGA-HU-A4GX-01 16 70497083 70497083 G A FUK 5'UTR 0.26 TCGA-HU-A4GX-01 16 70500827 70500827 G A FUK Missense_Mutation p.D152N 0.32 deleterious(0) probably_damaging(0.995) TCGA-HU-A4GX-01 16 70977741 70977741 C T HYDIN Missense_Mutation p.V2215M 0.16 benign(0.043) TCGA-HU-A4GX-01 16 71668550 71668550 C T MARVELD3 Intron 0.31 TCGA-HU-A4GX-01 16 71779114 71779114 C T AP1G1 Silent p.A647A 0.22 TCGA-HU-A4GX-01 16 72110691 72110691 C T HPR Missense_Mutation p.T253M 0.22 tolerated(0.05) benign(0.133) TCGA-HU-A4GX-01 16 72174448 72174448 G A PMFBP1 Missense_Mutation p.R224W 0.21 deleterious(0) probably_damaging(0.967) TCGA-HU-A4GX-01 16 72828435 72828435 A - ZFHX3 Frame_Shift_Del p.C2716Afs*30 0.12 TCGA-HU-A4GX-01 16 72991758 72991758 C - ZFHX3 Frame_Shift_Del p.E763Sfs*61 0.25 TCGA-HU-A4GX-01 16 74750315 74750315 C T FA2H Silent p.P323P 0.25 TCGA-HU-A4GX-01 16 75563611 75563611 G A CHST5 Silent p.R224R 0.22 TCGA-HU-A4GX-01 16 81167248 81167248 G T PKD1L2 RNA 0.24 TCGA-HU-A4GX-01 16 81187706 81187707 CT - PKD1L2 RNA 0.25 TCGA-HU-A4GX-01 16 81320986 81320986 G A BCMO1 Silent p.A463A 0.31 TCGA-HU-A4GX-01 16 81946265 81946265 C T PLCG2 Silent p.D666D 0.24 TCGA-HU-A4GX-01 16 830214 830214 C T MSLNL Missense_Mutation p.D263N 0.37 possibly_damaging(0.908) TCGA-HU-A4GX-01 16 84163848 84163848 G A HSDL1 Nonsense_Mutation p.R137* 0.31 TCGA-HU-A4GX-01 16 84270841 84270841 C T KCNG4 Missense_Mutation p.R84H 0.21 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GX-01 16 84353123 84353123 G A WFDC1 Missense_Mutation p.V170M 0.20 tolerated(0.13) benign(0.003) TCGA-HU-A4GX-01 16 85688440 85688440 G A GSE1 Missense_Mutation p.V214M 0.10 deleterious(0.03) unknown(0) TCGA-HU-A4GX-01 16 87393948 87393948 C T FBXO31 Missense_Mutation p.R122Q 0.29 tolerated(1) probably_damaging(0.93) TCGA-HU-A4GX-01 16 88694458 88694459 - C ZC3H18 Frame_Shift_Ins p.G803Rfs*21 0.22 TCGA-HU-A4GX-01 16 88871863 88871863 C T CDT1 Silent p.P168P 0.18 TCGA-HU-A4GX-01 16 89704614 89704614 G A DPEP1 Missense_Mutation p.C407Y 0.36 tolerated_low_confidence(0.05) unknown(0) TCGA-HU-A4GX-01 16 89849416 89849416 T C FANCA Missense_Mutation p.K522R 0.21 deleterious(0) benign(0.292) TCGA-HU-A4GX-01 17 1028559 1028559 C - ABR Frame_Shift_Del p.D69Mfs*23 0.23 TCGA-HU-A4GX-01 17 10362628 10362628 G A MYH4 Silent p.I509I 0.22 TCGA-HU-A4GX-01 17 10440997 10440997 G A MYH2 Silent p.I524I 0.28 TCGA-HU-A4GX-01 17 11656223 11656223 C T DNAH9 Silent p.G2228G 0.30 TCGA-HU-A4GX-01 17 12626277 12626278 - A MYOCD Frame_Shift_Ins p.N125Kfs*16 0.28 TCGA-HU-A4GX-01 17 13400018 13400018 G A HS3ST3A1 Silent p.I239I 0.13 TCGA-HU-A4GX-01 17 14248462 14248462 C T HS3ST3B1 Silent p.I224I 0.15 TCGA-HU-A4GX-01 17 16024412 16024412 C T NCOR1 Silent p.A602A 0.25 TCGA-HU-A4GX-01 17 1631634 1631634 G - WDR81 Frame_Shift_Del p.G1129Vfs*18 0.21 TCGA-HU-A4GX-01 17 16326906 16326906 A G TRPV2 Missense_Mutation p.H250R 0.25 deleterious(0) probably_damaging(0.992) TCGA-HU-A4GX-01 17 17723585 17723585 G A SREBF1 Silent p.P144P 0.30 TCGA-HU-A4GX-01 17 18022705 18022705 C T MYO15A Silent p.Y197Y 0.33 TCGA-HU-A4GX-01 17 18251660 18251660 C - SHMT1 Frame_Shift_Del p.V113Sfs*37 0.20 TCGA-HU-A4GX-01 17 18670082 18670082 C A FBXW10 Silent p.I537I 0.21 TCGA-HU-A4GX-01 17 18872443 18872443 G T SLC5A10 Missense_Mutation p.G178C 0.24 deleterious(0.01) benign(0.348) TCGA-HU-A4GX-01 17 19729453 19729453 T - ULK2 Frame_Shift_Del p.K278Nfs*130 0.28 TCGA-HU-A4GX-01 17 2226993 2226993 A G SRR Silent p.E283E 0.35 TCGA-HU-A4GX-01 17 27008369 27008369 C T SUPT6H Missense_Mutation p.A482V 0.26 tolerated(0.53) benign(0.01) TCGA-HU-A4GX-01 17 27064512 27064512 G A NEK8 Silent p.V269V 0.25 TCGA-HU-A4GX-01 17 27068452 27068452 G A NEK8 Missense_Mutation p.G638D 0.22 deleterious(0) probably_damaging(1) TCGA-HU-A4GX-01 17 27308582 27308582 G - SEZ6 Frame_Shift_Del p.S178Afs*121 0.24 TCGA-HU-A4GX-01 17 27937743 27937743 G A ANKRD13B Missense_Mutation p.R288Q 0.36 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GX-01 17 29111046 29111046 G A CRLF3 3'UTR 0.30 TCGA-HU-A4GX-01 17 30796128 30796128 G A PSMD11 Missense_Mutation p.R187Q 0.26 deleterious(0.01) benign(0.221) TCGA-HU-A4GX-01 17 33977595 33977595 G A AP2B1 Missense_Mutation p.R528H 0.30 deleterious(0) probably_damaging(0.966) TCGA-HU-A4GX-01 17 34854890 34854890 C T ZNHIT3 3'Flank 0.23 TCGA-HU-A4GX-01 17 3494642 3494642 A G SHPK Missense_Mutation p.L97P 0.25 tolerated(0.3) benign(0.001) TCGA-HU-A4GX-01 17 34964728 34964728 G - MRM1 Frame_Shift_Del p.E315Rfs*78 0.21 TCGA-HU-A4GX-01 17 3620083 3620083 C T ITGAE Missense_Mutation p.V1115I 0.21 tolerated(1) benign(0.002) TCGA-HU-A4GX-01 17 36962649 36962649 C T CWC25 Splice_Site p.X301_splice 0.47 TCGA-HU-A4GX-01 17 38320262 38320262 A G CASC3 Silent p.P438P 0.31 TCGA-HU-A4GX-01 17 39316818 39316818 C T KRTAP4-4 Silent p.V42V 0.31 TCGA-HU-A4GX-01 17 39340642 39340642 A G KRTAP4-1 3'UTR 0.23 TCGA-HU-A4GX-01 17 39553720 39553720 G - KRT31 Frame_Shift_Del p.S25Afs*17 0.14 TCGA-HU-A4GX-01 17 39975559 39975559 C - FKBP10 Frame_Shift_Del p.G278Afs*20 0.26 TCGA-HU-A4GX-01 17 40065856 40065856 T G ACLY Missense_Mutation p.K148T 0.15 deleterious(0.03) probably_damaging(1) TCGA-HU-A4GX-01 17 40720502 40720502 A T MLX Missense_Mutation p.S86C 0.28 deleterious(0) benign(0.293) TCGA-HU-A4GX-01 17 4085525 4085525 G - ANKFY1 Frame_Shift_Del p.P733Rfs*61 0.23 TCGA-HU-A4GX-01 17 41898340 41898340 C T MPP3 Silent p.R257R 0.17 TCGA-HU-A4GX-01 17 42335477 42335477 G A SLC4A1 Missense_Mutation p.R387W 0.27 deleterious(0.01) benign(0.005) TCGA-HU-A4GX-01 17 42476612 42476612 G A GPATCH8 Nonsense_Mutation p.R945* 0.25 TCGA-HU-A4GX-01 17 42477897 42477897 G T GPATCH8 Silent p.T516T 0.29 TCGA-HU-A4GX-01 17 43181224 43181224 G A NMT1 Missense_Mutation p.A438T 0.25 tolerated(0.1) possibly_damaging(0.699) TCGA-HU-A4GX-01 17 4389805 4389805 G - SPNS3 Frame_Shift_Del p.G461Afs*6 0.14 TCGA-HU-A4GX-01 17 45894054 45894054 C T OSBPL7 Missense_Mutation p.R268H 0.21 tolerated(0.1) probably_damaging(0.994) TCGA-HU-A4GX-01 17 4645308 4645308 G A ZMYND15 Missense_Mutation p.R309H 0.22 deleterious(0.01) possibly_damaging(0.855) TCGA-HU-A4GX-01 17 48543170 48543170 C T CHAD Missense_Mutation p.R279H 0.19 deleterious(0.05) possibly_damaging(0.781) TCGA-HU-A4GX-01 17 48545679 48545679 C T CHAD Missense_Mutation p.A166T 0.27 tolerated(0.91) benign(0.019) TCGA-HU-A4GX-01 17 4885437 4885437 C T CAMTA2 Missense_Mutation p.V143I 0.25 deleterious(0) probably_damaging(0.976) TCGA-HU-A4GX-01 17 48917804 48917804 G A WFIKKN2 Silent p.A385A 0.26 TCGA-HU-A4GX-01 17 4892840 4892843 TTCT - INCA1 Frame_Shift_Del p.K92Rfs*21 0.25 TCGA-HU-A4GX-01 17 5331587 5331587 T C RPAIN Missense_Mutation p.F229S 0.39 deleterious_low_confidence(0.02) benign(0) TCGA-HU-A4GX-01 17 54969032 54969032 G T TRIM25 3'UTR 0.33 TCGA-HU-A4GX-01 17 55083736 55083736 G T SCPEP1 3'UTR 0.35 TCGA-HU-A4GX-01 17 56290388 56290388 G A MKS1 Silent p.H271H 0.14 TCGA-HU-A4GX-01 17 56676886 56676886 G A TEX14 Missense_Mutation p.A613V 0.20 tolerated(0.27) benign(0.013) TCGA-HU-A4GX-01 17 57049544 57049544 C T PPM1E Silent p.L342L 0.25 TCGA-HU-A4GX-01 17 58134441 58134441 C T HEATR6 Missense_Mutation p.E683K 0.21 tolerated(0.12) benign(0.003) TCGA-HU-A4GX-01 17 58150607 58150607 A C HEATR6 Missense_Mutation p.L168V 0.29 deleterious(0) probably_damaging(0.994) TCGA-HU-A4GX-01 17 60743868 60743868 C T MRC2 Silent p.Y249Y 0.21 TCGA-HU-A4GX-01 17 61804044 61804044 C T STRADA Silent p.S16S 0.40 TCGA-HU-A4GX-01 17 61907507 61907507 T A PSMC5 Silent p.G93G 0.26 TCGA-HU-A4GX-01 17 61958243 61958243 G A GH2 Silent p.P115P 0.27 TCGA-HU-A4GX-01 17 62232285 62232285 T C TEX2 Silent p.E956E 0.36 TCGA-HU-A4GX-01 17 63052529 63052529 C G GNA13 Missense_Mutation p.K61N 0.20 deleterious(0) probably_damaging(1) TCGA-HU-A4GX-01 17 65052301 65052301 G A CACNG1 Missense_Mutation p.G195S 0.27 tolerated(0.18) benign(0.107) TCGA-HU-A4GX-01 17 65074496 65074496 G A HELZ Missense_Mutation p.R1901W 0.24 deleterious_low_confidence(0) unknown(0) TCGA-HU-A4GX-01 17 691291 691291 A C RNMTL1 Missense_Mutation p.N216H 0.25 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GX-01 17 6913317 6913317 C T ALOX12 Missense_Mutation p.R562W 0.21 deleterious(0.02) possibly_damaging(0.504) TCGA-HU-A4GX-01 17 6920605 6920605 A G C17orf49 Missense_Mutation p.M182V 0.25 tolerated_low_confidence(0.12) benign(0.003) TCGA-HU-A4GX-01 17 71084796 71084796 C T SLC39A11 Silent p.Q36Q 0.29 TCGA-HU-A4GX-01 17 71391336 71391336 C T SDK2 Missense_Mutation p.G1184R 0.29 deleterious(0) probably_damaging(1) TCGA-HU-A4GX-01 17 71394314 71394314 G A SDK2 Missense_Mutation p.R1072C 0.25 deleterious(0.02) probably_damaging(0.997) TCGA-HU-A4GX-01 17 7214736 7214736 G A EIF5A Missense_Mutation p.R143H 0.24 deleterious(0) benign(0.018) TCGA-HU-A4GX-01 17 7250404 7250404 G A ACAP1 Missense_Mutation p.A396T 0.21 tolerated(0.61) benign(0.001) TCGA-HU-A4GX-01 17 7386191 7386191 G A SLC35G6 Silent p.L296L 0.19 TCGA-HU-A4GX-01 17 73895602 73895602 T C MRPL38 Silent p.S288S 0.22 TCGA-HU-A4GX-01 17 74018100 74018100 A C EVPL Missense_Mutation p.S219A 0.36 tolerated(0.59) benign(0.006) TCGA-HU-A4GX-01 17 74277016 74277016 G A QRICH2 Missense_Mutation p.R1262C 0.38 deleterious(0.02) possibly_damaging(0.827) TCGA-HU-A4GX-01 17 74395734 74395734 G A UBE2O Missense_Mutation p.S475L 0.32 tolerated(0.26) benign(0.148) TCGA-HU-A4GX-01 17 7495831 7495831 G A FXR2 Missense_Mutation p.R606C 0.23 deleterious_low_confidence(0) possibly_damaging(0.563) TCGA-HU-A4GX-01 17 7579473 7579473 G A TP53 Missense_Mutation p.P72S 0.27 tolerated(0.8) benign(0.002) TCGA-HU-A4GX-01 17 76202066 76202066 C T AFMID Missense_Mutation p.L279F 0.30 deleterious(0.02) possibly_damaging(0.897) TCGA-HU-A4GX-01 17 77043779 77043779 G A C1QTNF1 Missense_Mutation p.R152Q 0.30 tolerated(0.06) probably_damaging(0.937) TCGA-HU-A4GX-01 17 77709291 77709291 C T ENPP7 Silent p.N283N 0.15 TCGA-HU-A4GX-01 17 77755617 77755617 G T CBX2 Intron 0.23 TCGA-HU-A4GX-01 17 77807930 77807930 G A CBX4 Missense_Mutation p.A504V 0.25 tolerated(0.38) possibly_damaging(0.499) TCGA-HU-A4GX-01 17 7814252 7814252 G A CHD3 Missense_Mutation p.A2007T 0.26 possibly_damaging(0.499) TCGA-HU-A4GX-01 17 78272299 78272299 C T RNF213 Missense_Mutation p.R731W 0.20 probably_damaging(0.94) TCGA-HU-A4GX-01 17 78933961 78933961 C T RPTOR Silent p.D1187D 0.24 TCGA-HU-A4GX-01 17 79801766 79801766 G T P4HB 3'UTR 0.27 TCGA-HU-A4GX-01 17 8701011 8701011 C A MFSD6L Silent p.G476G 0.26 TCGA-HU-A4GX-01 17 961263 961263 G A ABR Missense_Mutation p.S443L 0.33 deleterious(0.02) possibly_damaging(0.908) TCGA-HU-A4GX-01 18 14479228 14479228 G A CXADRP3 RNA 0.36 TCGA-HU-A4GX-01 18 14524922 14524922 C A POTEC Missense_Mutation p.S396I 0.30 deleterious(0.02) possibly_damaging(0.593) TCGA-HU-A4GX-01 18 19203788 19203788 G A SNRPD1 Silent p.T57T 0.17 TCGA-HU-A4GX-01 18 21759789 21759789 G A OSBPL1A Missense_Mutation p.A608V 0.27 deleterious(0.05) probably_damaging(0.917) TCGA-HU-A4GX-01 18 22057515 22057515 G T HRH4 Missense_Mutation p.V388L 0.12 tolerated_low_confidence(0.51) benign(0.002) TCGA-HU-A4GX-01 18 28710616 28710616 G A DSC1 Missense_Mutation p.S849L 0.25 deleterious(0.01) possibly_damaging(0.784) TCGA-HU-A4GX-01 18 31803157 31803157 C - NOL4 Frame_Shift_Del p.D21Tfs*8 0.18 TCGA-HU-A4GX-01 18 32886947 32886947 T C ZNF271 RNA 0.26 TCGA-HU-A4GX-01 18 40857246 40857246 T - SYT4 Frame_Shift_Del p.M1? 0.19 TCGA-HU-A4GX-01 18 43204601 43204601 C T SLC14A2 5'UTR 0.26 TCGA-HU-A4GX-01 18 45555955 45555955 G A ZBTB7C Silent p.G512G 0.42 TCGA-HU-A4GX-01 18 46284389 46284389 G - CTIF Frame_Shift_Del p.G230Afs*26 0.24 TCGA-HU-A4GX-01 18 5397388 5397388 G A EPB41L3 Missense_Mutation p.T837M 0.14 tolerated_low_confidence(0.34) benign(0.004) TCGA-HU-A4GX-01 18 54591218 54591218 C T WDR7 Nonsense_Mutation p.R1198* 0.25 TCGA-HU-A4GX-01 18 55315862 55315862 C T ATP8B1 Missense_Mutation p.R1205Q 0.25 deleterious(0.02) possibly_damaging(0.649) TCGA-HU-A4GX-01 18 55996250 55996250 A T NEDD4L Missense_Mutation p.N235I 0.30 tolerated(0.06) benign(0.13) TCGA-HU-A4GX-01 18 56171214 56171214 G A ALPK2 Missense_Mutation p.H2066Y 0.29 deleterious(0) probably_damaging(1) TCGA-HU-A4GX-01 18 5891698 5891698 C - TMEM200C Frame_Shift_Del p.G122Vfs*140 0.22 TCGA-HU-A4GX-01 18 59221536 59221536 G A CDH20 Missense_Mutation p.E672K 0.27 deleterious(0) possibly_damaging(0.85) TCGA-HU-A4GX-01 18 66504103 66504103 C - CCDC102B Frame_Shift_Del p.R37Gfs*89 0.18 TCGA-HU-A4GX-01 18 674307 674307 A G ENOSF1 Nonstop_Mutation p.*451Qext*21 0.24 TCGA-HU-A4GX-01 18 67508532 67508532 C T DOK6 Silent p.Y303Y 0.24 TCGA-HU-A4GX-01 18 71959089 71959089 C T CYB5A Missense_Mutation p.A8T 0.31 tolerated(0.23) benign(0.001) TCGA-HU-A4GX-01 18 72997590 72997590 G A TSHZ1 Silent p.S31S 0.31 TCGA-HU-A4GX-01 18 76753554 76753554 C T SALL3 Silent p.T521T 0.23 TCGA-HU-A4GX-01 18 77193582 77193582 G A NFATC1 Silent p.P397P 0.21 TCGA-HU-A4GX-01 18 77896563 77896564 - T ADNP2 Frame_Shift_Ins p.G1092Wfs*23 0.09 TCGA-HU-A4GX-01 18 8784560 8784560 C A SOGA2 Missense_Mutation p.L484M 0.29 deleterious(0) possibly_damaging(0.888) TCGA-HU-A4GX-01 19 10097273 10097273 C T COL5A3 Missense_Mutation p.G734S 0.23 unknown(0) TCGA-HU-A4GX-01 19 10100194 10100194 G A COL5A3 Missense_Mutation p.P666L 0.30 unknown(0) TCGA-HU-A4GX-01 19 10668280 10668280 C T KRI1 Missense_Mutation p.R528H 0.18 deleterious(0) probably_damaging(0.992) TCGA-HU-A4GX-01 19 11024578 11024578 C T CARM1 Missense_Mutation p.T232M 0.29 tolerated(0.09) benign(0.01) TCGA-HU-A4GX-01 19 11135020 11135020 T G SMARCA4 Missense_Mutation p.I996S 0.17 probably_damaging(0.978) TCGA-HU-A4GX-01 19 11241983 11241983 C T LDLR Silent p.D858D 0.29 TCGA-HU-A4GX-01 19 11356356 11356356 C T DOCK6 Silent p.S302S 0.30 TCGA-HU-A4GX-01 19 12060510 12060510 T C ZNF700 Silent p.T557T 0.23 TCGA-HU-A4GX-01 19 12461306 12461306 G A ZNF442 Nonsense_Mutation p.Q365* 0.25 TCGA-HU-A4GX-01 19 1279017 1279017 C T C19orf24 3'UTR 0.21 TCGA-HU-A4GX-01 19 12883473 12883473 G A HOOK2 Missense_Mutation p.T137M 0.26 tolerated(0.22) benign(0.059) TCGA-HU-A4GX-01 19 13051174 13051174 C T CALR Missense_Mutation p.P204S 0.19 deleterious(0) probably_damaging(0.948) TCGA-HU-A4GX-01 19 14269310 14269310 G A LPHN1 Missense_Mutation p.T740M 0.26 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GX-01 19 1466991 1466991 C A APC2 Missense_Mutation p.L1231M 0.38 probably_damaging(0.94) TCGA-HU-A4GX-01 19 1483747 1483747 G A PCSK4 Silent p.Y431Y 0.34 TCGA-HU-A4GX-01 19 15065082 15065082 C T SLC1A6 Missense_Mutation p.R410H 0.25 deleterious(0) probably_damaging(0.995) TCGA-HU-A4GX-01 19 15224566 15224566 G A SYDE1 Missense_Mutation p.R667Q 0.26 tolerated(0.46) possibly_damaging(0.823) TCGA-HU-A4GX-01 19 1556587 1556587 C T MEX3D Missense_Mutation p.G311R 0.33 deleterious(0) probably_damaging(0.979) TCGA-HU-A4GX-01 19 15852693 15852693 T - OR10H3 Frame_Shift_Del p.H166Tfs*9 0.18 TCGA-HU-A4GX-01 19 16965102 16965102 G - SIN3B Intron 0.29 TCGA-HU-A4GX-01 19 17013616 17013616 C T CPAMD8 Missense_Mutation p.V1557I 0.29 tolerated(0.15) benign(0.078) TCGA-HU-A4GX-01 19 17091392 17091392 C T CPAMD8 Silent p.Q547Q 0.30 TCGA-HU-A4GX-01 19 17922436 17922436 C T B3GNT3 Silent p.N208N 0.34 TCGA-HU-A4GX-01 19 18376825 18376825 G A KIAA1683 Missense_Mutation p.R509C 0.24 deleterious(0) probably_damaging(0.992) TCGA-HU-A4GX-01 19 18887993 18887993 C - CRTC1 Frame_Shift_Del p.S588Afs*6 0.29 TCGA-HU-A4GX-01 19 19010503 19010503 G A COPE Silent p.Y304Y 0.21 TCGA-HU-A4GX-01 19 19221753 19221753 G - SLC25A42 3'UTR 0.32 TCGA-HU-A4GX-01 19 19414844 19414844 T C SUGP1 Intron 0.25 TCGA-HU-A4GX-01 19 1993114 1993114 C A BTBD2 Missense_Mutation p.A197S 0.25 deleterious(0.05) probably_damaging(0.995) TCGA-HU-A4GX-01 19 2097034 2097036 CTT - IZUMO4 In_Frame_Del p.F31del 0.24 TCGA-HU-A4GX-01 19 21132748 21132748 T C ZNF85 Silent p.H476H 0.24 TCGA-HU-A4GX-01 19 22363776 22363776 G A ZNF676 Missense_Mutation p.T248I 0.16 deleterious(0) possibly_damaging(0.552) TCGA-HU-A4GX-01 19 22780152 22780152 T C RN7SL860P 5'Flank 0.27 TCGA-HU-A4GX-01 19 23544256 23544257 TA - ZNF91 Frame_Shift_Del p.H508Qfs*13 0.23 TCGA-HU-A4GX-01 19 2833974 2833974 C T ZNF554 Silent p.S247S 0.26 TCGA-HU-A4GX-01 19 2934023 2934023 G A ZNF77 Nonsense_Mutation p.R368* 0.26 TCGA-HU-A4GX-01 19 3006610 3006610 C T TLE2 Silent p.S436S 0.29 TCGA-HU-A4GX-01 19 33353056 33353056 C T SLC7A9 Silent p.A224A 0.28 TCGA-HU-A4GX-01 19 33353080 33353080 C T SLC7A9 Silent p.L216L 0.20 TCGA-HU-A4GX-01 19 33464997 33464997 A - C19orf40 Frame_Shift_Del p.T94Pfs*3 0.19 TCGA-HU-A4GX-01 19 33623249 33623249 C T WDR88 Silent p.L58L 0.21 TCGA-HU-A4GX-01 19 3527008 3527008 G A FZR1 Missense_Mutation p.D140N 0.28 tolerated(0.55) benign(0.014) TCGA-HU-A4GX-01 19 35786581 35786581 G A MAG Missense_Mutation p.V38I 0.24 deleterious(0) probably_damaging(0.994) TCGA-HU-A4GX-01 19 36046612 36046612 G A ATP4A Missense_Mutation p.R658C 0.29 deleterious(0.03) probably_damaging(0.999) TCGA-HU-A4GX-01 19 36351526 36351526 C T KIRREL2 Silent p.N295N 0.24 TCGA-HU-A4GX-01 19 37382942 37382942 A G ZNF829 Missense_Mutation p.Y332H 0.30 tolerated(0.51) possibly_damaging(0.804) TCGA-HU-A4GX-01 19 38126828 38126828 T C ZFP30 Missense_Mutation p.Q205R 0.30 tolerated(0.05) benign(0.016) TCGA-HU-A4GX-01 19 38190427 38190427 C T ZNF607 Missense_Mutation p.C202Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GX-01 19 38885084 38885084 G A SPRED3 Intron 0.26 TCGA-HU-A4GX-01 19 38991585 38991585 C T RYR1 Silent p.D2523D 0.28 TCGA-HU-A4GX-01 19 39088098 39088098 T C MAP4K1 Intron 0.25 TCGA-HU-A4GX-01 19 39847556 39847556 G A SAMD4B Missense_Mutation p.G8D 0.28 deleterious(0.03) probably_damaging(0.95) TCGA-HU-A4GX-01 19 40009541 40009543 AGG - SELV Splice_Site p.X298_splice 0.21 TCGA-HU-A4GX-01 19 40747850 40747850 C T AKT2 Missense_Mutation p.A190T 0.29 tolerated(0.11) benign(0.012) TCGA-HU-A4GX-01 19 40895647 40895647 C T HIPK4 Missense_Mutation p.E55K 0.21 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GX-01 19 41386388 41386388 C T CYP2A7 Silent p.T163T 0.35 TCGA-HU-A4GX-01 19 42224975 42224976 AC - CEACAM5 Frame_Shift_Del p.Q638Sfs*11 0.21 TCGA-HU-A4GX-01 19 42492087 42492087 C T ATP1A3 Splice_Site p.X132_splice 0.26 TCGA-HU-A4GX-01 19 42813592 42813592 C T PRR19 5'UTR 0.33 TCGA-HU-A4GX-01 19 43026353 43026353 C T CEACAM1 Silent p.P142P 0.26 TCGA-HU-A4GX-01 19 4433532 4433532 G A CHAF1A Missense_Mutation p.G890D 0.26 tolerated(0.2) possibly_damaging(0.647) TCGA-HU-A4GX-01 19 44833358 44833359 CT - ZNF112 Frame_Shift_Del p.R323Sfs*12 0.23 TCGA-HU-A4GX-01 19 45281204 45281204 G A CBLC Missense_Mutation p.A6T 0.24 deleterious_low_confidence(0.01) benign(0.231) TCGA-HU-A4GX-01 19 45916943 45916943 G T ERCC1 Missense_Mutation p.P279T 0.18 deleterious(0.02) probably_damaging(0.994) TCGA-HU-A4GX-01 19 46094061 46094061 A G GPR4 Missense_Mutation p.L355P 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.468) TCGA-HU-A4GX-01 19 46299145 46299145 G A RSPH6A Silent p.G712G 0.34 TCGA-HU-A4GX-01 19 4682823 4682823 C T DPP9 Missense_Mutation p.V787I 0.28 tolerated(0.46) benign(0.432) TCGA-HU-A4GX-01 19 49238458 49238458 C T RASIP1 Missense_Mutation p.A392T 0.25 tolerated(0.38) benign(0.288) TCGA-HU-A4GX-01 19 49398261 49398261 G A TULP2 Nonsense_Mutation p.R170* 0.23 TCGA-HU-A4GX-01 19 49416789 49416789 G T NUCB1 Missense_Mutation p.R242M 0.19 tolerated(0.08) benign(0.068) TCGA-HU-A4GX-01 19 50017380 50017380 G - FCGRT Frame_Shift_Del p.G107Efs*29 0.31 TCGA-HU-A4GX-01 19 50333052 50333052 C A MED25 Missense_Mutation p.H179N 0.50 tolerated(0.44) benign(0.307) TCGA-HU-A4GX-01 19 50333113 50333113 C - MED25 Frame_Shift_Del p.P201Rfs*13 0.19 TCGA-HU-A4GX-01 19 50335366 50335366 G A MED25 Silent p.E442E 0.27 TCGA-HU-A4GX-01 19 50412225 50412230 GGTGGC - NUP62 In_Frame_Del p.A279_T280del 0.21 TCGA-HU-A4GX-01 19 50764825 50764825 C A MYH14 Silent p.R840R 0.23 TCGA-HU-A4GX-01 19 51021769 51021769 C T LRRC4B Missense_Mutation p.G401S 0.21 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GX-01 19 51465088 51465088 C T KLK6 Missense_Mutation p.R165H 0.23 tolerated(0.35) benign(0.006) TCGA-HU-A4GX-01 19 51537328 51537328 C T KLK12 Nonsense_Mutation p.W35* 0.25 TCGA-HU-A4GX-01 19 51826942 51826942 G A IGLON5 Missense_Mutation p.R62H 0.35 tolerated(0.36) benign(0.206) TCGA-HU-A4GX-01 19 52115535 52115535 G A SIGLEC5 Silent p.D535D 0.22 TCGA-HU-A4GX-01 19 52249509 52249509 C T FPR1 Missense_Mutation p.A247T 0.24 deleterious(0.01) benign(0.108) TCGA-HU-A4GX-01 19 52569290 52569290 A G ZNF841 Silent p.H615H 0.21 TCGA-HU-A4GX-01 19 5258089 5258089 C T PTPRS Silent p.E215E 0.19 TCGA-HU-A4GX-01 19 54618065 54618065 C A TFPT Silent p.V13V 0.20 TCGA-HU-A4GX-01 19 54967272 54967272 G A LENG8 Silent p.T384T 0.08 TCGA-HU-A4GX-01 19 55450913 55450913 G A NLRP7 Missense_Mutation p.A425V 0.31 tolerated(0.06) possibly_damaging(0.475) TCGA-HU-A4GX-01 19 55493930 55493930 C T NLRP2 Silent p.D288D 0.29 TCGA-HU-A4GX-01 19 55748048 55748048 C T PPP6R1 Missense_Mutation p.A651T 0.29 tolerated(0.5) benign(0.002) TCGA-HU-A4GX-01 19 55853589 55853590 - C SUV420H2 Frame_Shift_Ins p.L42Pfs*92 0.21 TCGA-HU-A4GX-01 19 56133455 56133455 G A ZNF784 Nonsense_Mutation p.R212* 0.36 TCGA-HU-A4GX-01 19 56369488 56369488 C T NLRP4 Silent p.P243P 0.29 TCGA-HU-A4GX-01 19 57089695 57089695 G A ZNF470 Missense_Mutation p.R633H 0.24 tolerated(0.16) benign(0.001) TCGA-HU-A4GX-01 19 57175695 57175695 G A ZNF835 Missense_Mutation p.A291V 0.24 tolerated(0.07) benign(0.062) TCGA-HU-A4GX-01 19 57286260 57286260 G A ZIM2 Silent p.Y460Y 0.21 TCGA-HU-A4GX-01 19 57840064 57840064 C T ZNF543 Nonsense_Mutation p.Q412* 0.27 TCGA-HU-A4GX-01 19 57840091 57840091 A G ZNF543 Missense_Mutation p.K421E 0.28 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GX-01 19 57932498 57932498 A G ZNF17 Silent p.R546R 0.26 TCGA-HU-A4GX-01 19 58806556 58806556 A G ZNF8 Missense_Mutation p.H461R 0.27 deleterious(0.04) benign(0.001) TCGA-HU-A4GX-01 19 58982184 58982184 G A ZNF324 Missense_Mutation p.V109I 0.30 tolerated(0.28) benign(0.003) TCGA-HU-A4GX-01 19 58988846 58988846 C T ZNF446 Silent p.R87R 0.28 TCGA-HU-A4GX-01 19 59059182 59059182 A G TRIM28 Missense_Mutation p.Q288R 0.27 deleterious(0.05) probably_damaging(0.966) TCGA-HU-A4GX-01 19 59074613 59074613 C - MZF1 Frame_Shift_Del p.G344Afs*29 0.50 TCGA-HU-A4GX-01 19 6187702 6187702 C T ACSBG2 Silent p.T591T 0.36 TCGA-HU-A4GX-01 19 621151 621151 C T POLRMT Silent p.T849T 0.19 TCGA-HU-A4GX-01 19 6974669 6974669 G T EMR4P RNA 0.26 TCGA-HU-A4GX-01 19 7676687 7676687 C - CAMSAP3 Frame_Shift_Del p.P465Rfs*125 0.20 TCGA-HU-A4GX-01 19 7676727 7676727 C - CAMSAP3 Frame_Shift_Del p.P478Rfs*112 0.26 TCGA-HU-A4GX-01 19 7685556 7685556 C A XAB2 Splice_Site p.X658_splice 0.23 TCGA-HU-A4GX-01 19 7964581 7964581 C T LRRC8E Missense_Mutation p.R392C 0.17 deleterious(0) probably_damaging(0.988) TCGA-HU-A4GX-01 19 8028414 8028414 C - ELAVL1 Frame_Shift_Del p.D312Tfs*27 0.16 TCGA-HU-A4GX-01 19 8201150 8201150 G A FBN3 Silent p.C463C 0.27 TCGA-HU-A4GX-01 19 8491553 8491553 G A MARCH2 Silent p.P79P 0.19 TCGA-HU-A4GX-01 19 8550766 8550766 G A HNRNPM Missense_Mutation p.R485H 0.24 tolerated(0.08) benign(0.047) TCGA-HU-A4GX-01 19 855593 855593 C T ELANE Silent p.N132N 0.24 TCGA-HU-A4GX-01 19 8670161 8670161 C T ADAMTS10 Silent p.S57S 0.33 TCGA-HU-A4GX-01 19 8982158 8982158 G A MUC16 Silent p.N14039N 0.25 TCGA-HU-A4GX-01 19 8997482 8997482 C T MUC16 Missense_Mutation p.R13647Q 0.32 benign(0.348) TCGA-HU-A4GX-01 19 9225634 9225634 C T OR7G1 Missense_Mutation p.R269Q 0.31 tolerated(0.08) possibly_damaging(0.801) TCGA-HU-A4GX-01 19 9578489 9578489 A G ZNF560 Silent p.C378C 0.26 TCGA-HU-A4GX-01 1 101339425 101339425 A - EXTL2 3'UTR 0.23 TCGA-HU-A4GX-01 1 103488461 103488461 T C COL11A1 Missense_Mutation p.E361G 0.27 benign(0.05) TCGA-HU-A4GX-01 1 10510096 10510096 G T CORT 5'UTR 0.24 TCGA-HU-A4GX-01 1 109547218 109547218 T - WDR47 Frame_Shift_Del p.N425Mfs*24 0.18 TCGA-HU-A4GX-01 1 110766118 110766118 G A KCNC4 Missense_Mutation p.R404H 0.23 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GX-01 1 1115547 1115547 C T TTLL10 Silent p.P111P 0.42 TCGA-HU-A4GX-01 1 111773369 111773369 G A CHI3L2 Missense_Mutation p.A26T 0.32 tolerated(0.12) possibly_damaging(0.668) TCGA-HU-A4GX-01 1 11204730 11204730 C T MTOR Missense_Mutation p.R1616H 0.21 deleterious(0.03) possibly_damaging(0.781) TCGA-HU-A4GX-01 1 11313928 11313928 C T MTOR Missense_Mutation p.E270K 0.21 deleterious(0) probably_damaging(0.986) TCGA-HU-A4GX-01 1 11345851 11345851 C A UBIAD1 Missense_Mutation p.A227D 0.36 deleterious(0) probably_damaging(0.977) TCGA-HU-A4GX-01 1 115130365 115130365 G A DENND2C Silent p.D880D 0.24 TCGA-HU-A4GX-01 1 115272955 115272955 C T CSDE1 Missense_Mutation p.R473H 0.20 tolerated(0.24) probably_damaging(0.947) TCGA-HU-A4GX-01 1 11854880 11854880 G A MTHFR Nonsense_Mutation p.R358* 0.40 TCGA-HU-A4GX-01 1 12091811 12091811 G A MIIP Silent p.P371P 0.26 TCGA-HU-A4GX-01 1 1290110 1290110 G - MXRA8 Frame_Shift_Del p.R301Gfs*107 0.28 TCGA-HU-A4GX-01 1 145109530 145109530 T C SEC22B RNA 0.08 TCGA-HU-A4GX-01 1 145560110 145560110 C T ANKRD35 Missense_Mutation p.A199V 0.24 tolerated(0.64) probably_damaging(0.918) TCGA-HU-A4GX-01 1 145608468 145608468 G A POLR3C Silent p.N113N 0.25 TCGA-HU-A4GX-01 1 147230449 147230449 G A GJA5 Nonsense_Mutation p.Q300* 0.22 TCGA-HU-A4GX-01 1 149858204 149858204 A C HIST2H2BE 5'UTR 0.20 TCGA-HU-A4GX-01 1 149882203 149882203 G A SV2A Silent p.F336F 0.37 TCGA-HU-A4GX-01 1 149898716 149898716 C T SF3B4 Silent p.V86V 0.28 TCGA-HU-A4GX-01 1 149900796 149900796 A - MTMR11 3'UTR 0.14 TCGA-HU-A4GX-01 1 151584935 151584936 - G SNX27 Frame_Shift_Ins p.A89Gfs*22 0.33 TCGA-HU-A4GX-01 1 152191461 152191461 G A HRNR Nonsense_Mutation p.R882* 0.20 TCGA-HU-A4GX-01 1 152286867 152286867 T C FLG Silent p.S165S 0.17 TCGA-HU-A4GX-01 1 152759915 152759915 G T LCE1E Missense_Mutation p.S47I 0.18 deleterious_low_confidence(0) unknown(0) TCGA-HU-A4GX-01 1 154184764 154184764 G A C1orf43 Intron 0.29 TCGA-HU-A4GX-01 1 154185102 154185102 T G C1orf43 Splice_Site p.X114_splice 0.16 TCGA-HU-A4GX-01 1 154316910 154316910 C T ATP8B2 Missense_Mutation p.T725M 0.25 deleterious(0.01) probably_damaging(0.939) TCGA-HU-A4GX-01 1 154998785 154998785 C T DCST2 Missense_Mutation p.R535Q 0.23 deleterious(0.04) benign(0.405) TCGA-HU-A4GX-01 1 155291869 155291869 G C RUSC1 Missense_Mutation p.C102S 0.19 tolerated_low_confidence(0.13) probably_damaging(0.996) TCGA-HU-A4GX-01 1 155735826 155735826 A C GON4L Silent p.T1146T 0.22 TCGA-HU-A4GX-01 1 156262733 156262733 G - C1orf85 3'UTR 0.28 TCGA-HU-A4GX-01 1 156496285 156496285 C T IQGAP3 Missense_Mutation p.R1630Q 0.24 deleterious(0.05) unknown(0) TCGA-HU-A4GX-01 1 156704174 156704174 G A RRNAD1 Missense_Mutation p.R337Q 0.30 tolerated(0.1) benign(0.022) TCGA-HU-A4GX-01 1 158581121 158581121 G T SPTA1 Missense_Mutation p.P2398Q 0.23 deleterious(0.02) probably_damaging(0.971) TCGA-HU-A4GX-01 1 160000853 160000853 G T PIGM Missense_Mutation p.A226D 0.23 tolerated(0.63) benign(0.003) TCGA-HU-A4GX-01 1 160326878 160326878 G A NCSTN Silent p.T614T 0.25 TCGA-HU-A4GX-01 1 16073510 16073510 C T TMEM82 Silent p.L302L 0.24 TCGA-HU-A4GX-01 1 160914969 160914969 C A ITLN2 Silent p.R313R 0.21 TCGA-HU-A4GX-01 1 161046146 161046146 G A PVRL4 Missense_Mutation p.R284W 0.25 tolerated(0.21) possibly_damaging(0.89) TCGA-HU-A4GX-01 1 162344317 162344317 C T C1orf111 Missense_Mutation p.V103M 0.19 tolerated(0.2) probably_damaging(0.926) TCGA-HU-A4GX-01 1 16342093 16342093 C T HSPB7 Silent p.R165R 0.31 TCGA-HU-A4GX-01 1 16945763 16945763 G A RP5-1182A14.5 3'Flank 0.11 TCGA-HU-A4GX-01 1 17332225 17332225 G A ATP13A2 Missense_Mutation p.T20M 0.29 tolerated_low_confidence(0.09) benign(0.02) TCGA-HU-A4GX-01 1 17411114 17411114 G A PADI2 Silent p.P306P 0.57 TCGA-HU-A4GX-01 1 176762740 176762740 G A PAPPA2 Missense_Mutation p.V1689M 0.28 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GX-01 1 176926901 176926901 C T ASTN1 Silent p.P600P 0.21 TCGA-HU-A4GX-01 1 17739612 17739614 CTG - RCC2 In_Frame_Del p.A423del 0.39 TCGA-HU-A4GX-01 1 178777241 178777241 C T RALGPS2 Missense_Mutation p.A92V 0.19 deleterious(0) probably_damaging(0.987) TCGA-HU-A4GX-01 1 179821836 179821836 T - TOR1AIP2 5'UTR 0.30 TCGA-HU-A4GX-01 1 179983022 179983022 C T CEP350 Silent p.D478D 0.26 TCGA-HU-A4GX-01 1 180064806 180064806 A - CEP350 Frame_Shift_Del p.N2889Ifs*10 0.21 TCGA-HU-A4GX-01 1 180235529 180235529 G A LHX4 Missense_Mutation p.R84H 0.26 deleterious(0) benign(0.187) TCGA-HU-A4GX-01 1 180897381 180897387 GCCCCAG - KIAA1614 Intron 0.25 TCGA-HU-A4GX-01 1 181727237 181727239 TGA - CACNA1E In_Frame_Del p.M1497del 0.20 TCGA-HU-A4GX-01 1 1961191 1961191 C T GABRD Missense_Mutation p.P350L 0.26 tolerated(0.2) benign(0.002) TCGA-HU-A4GX-01 1 1961598 1961598 G - GABRD Frame_Shift_Del p.G414Afs*95 0.21 TCGA-HU-A4GX-01 1 196801077 196801077 G A CFHR1 Missense_Mutation p.R314Q 0.27 deleterious(0.04) probably_damaging(0.994) TCGA-HU-A4GX-01 1 197072396 197072396 T - ASPM Frame_Shift_Del p.A1996Lfs*4 0.18 TCGA-HU-A4GX-01 1 201043736 201043736 T C CACNA1S Missense_Mutation p.N654S 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-HU-A4GX-01 1 201757711 201757711 C T NAV1 Silent p.A1037A 0.25 TCGA-HU-A4GX-01 1 201869807 201869808 - T LMOD1 Frame_Shift_Ins p.A112Sfs*25 0.14 TCGA-HU-A4GX-01 1 202704625 202704625 T - KDM5B Frame_Shift_Del p.S1119Afs*4 0.20 TCGA-HU-A4GX-01 1 203008205 203008205 C T PPFIA4 Silent p.D23D 0.19 TCGA-HU-A4GX-01 1 204124957 204124958 AT - REN Frame_Shift_Del p.Y350Cfs*8 0.23 TCGA-HU-A4GX-01 1 205031679 205031679 G A CNTN2 Missense_Mutation p.A408T 0.19 deleterious(0) probably_damaging(0.93) TCGA-HU-A4GX-01 1 205308421 205308421 G T KLHDC8A Missense_Mutation p.L220M 0.14 tolerated(0.1) benign(0.016) TCGA-HU-A4GX-01 1 206647728 206647728 C - IKBKE Frame_Shift_Del p.R49Afs*5 0.12 TCGA-HU-A4GX-01 1 207287497 207287497 G A C4BPA Silent p.T65T 0.36 TCGA-HU-A4GX-01 1 207643042 207643042 A T CR2 Missense_Mutation p.I274F 0.23 deleterious(0) probably_damaging(0.993) TCGA-HU-A4GX-01 1 207700196 207700196 G A CR1 Missense_Mutation p.G329S 0.23 deleterious(0.01) probably_damaging(0.97) TCGA-HU-A4GX-01 1 2077501 2077501 C T PRKCZ Silent p.D196D 0.24 TCGA-HU-A4GX-01 1 21011475 21011475 C T KIF17 Silent p.V686V 0.22 TCGA-HU-A4GX-01 1 214556665 214556666 TC - PTPN14 Frame_Shift_Del p.E844Dfs*43 0.20 TCGA-HU-A4GX-01 1 214557469 214557469 T C PTPN14 Missense_Mutation p.T577A 0.31 tolerated(0.48) possibly_damaging(0.452) TCGA-HU-A4GX-01 1 214706334 214706334 C A PTPN14 Intron 0.22 TCGA-HU-A4GX-01 1 21929337 21929337 C T RAP1GAP Missense_Mutation p.A564T 0.24 tolerated(0.08) probably_damaging(0.977) TCGA-HU-A4GX-01 1 220191840 220191840 C T EPRS Missense_Mutation p.R482H 0.22 deleterious(0) probably_damaging(0.988) TCGA-HU-A4GX-01 1 223971921 223971923 CTT - TP53BP2 In_Frame_Del p.E1086del 0.17 TCGA-HU-A4GX-01 1 226062014 226062014 G A TMEM63A Silent p.R80R 0.16 TCGA-HU-A4GX-01 1 226561998 226561998 T C PARP1 Missense_Mutation p.K667E 0.33 deleterious(0.04) benign(0.015) TCGA-HU-A4GX-01 1 227152946 227152947 - A ADCK3 Frame_Shift_Ins p.N142Kfs*38 0.24 TCGA-HU-A4GX-01 1 228564859 228564859 G A OBSCN Missense_Mutation p.E8673K 0.20 probably_damaging(0.97) TCGA-HU-A4GX-01 1 230937365 230937365 C A CAPN9 3'UTR 0.27 TCGA-HU-A4GX-01 1 231060705 231060705 C T TTC13 Missense_Mutation p.A535T 0.20 tolerated(0.59) benign(0.007) TCGA-HU-A4GX-01 1 231487256 231487256 A - SPRTN Frame_Shift_Del p.G222Afs*7 0.25 TCGA-HU-A4GX-01 1 232564165 232564165 G A SIPA1L2 Nonsense_Mutation p.R1468* 0.30 TCGA-HU-A4GX-01 1 232579387 232579387 C T SIPA1L2 Missense_Mutation p.G1133D 0.22 tolerated(0.25) benign(0.082) TCGA-HU-A4GX-01 1 232581486 232581486 C T SIPA1L2 Missense_Mutation p.D1048N 0.25 tolerated(0.38) probably_damaging(0.999) TCGA-HU-A4GX-01 1 232650347 232650347 C T SIPA1L2 Missense_Mutation p.A247T 0.14 tolerated(0.06) probably_damaging(0.997) TCGA-HU-A4GX-01 1 23519991 23519991 G A HTR1D Missense_Mutation p.T241M 0.29 deleterious(0.03) probably_damaging(0.99) TCGA-HU-A4GX-01 1 237540677 237540677 A - RYR2 Frame_Shift_Del p.V175Yfs*9 0.28 TCGA-HU-A4GX-01 1 23782429 23782429 C T ASAP3 Missense_Mutation p.G98D 0.30 deleterious(0) probably_damaging(1) TCGA-HU-A4GX-01 1 237872296 237872296 A G RYR2 Missense_Mutation p.D3347G 0.17 benign(0.418) TCGA-HU-A4GX-01 1 243456462 243456462 T - SDCCAG8 Frame_Shift_Del p.S207Pfs*17 0.16 TCGA-HU-A4GX-01 1 244715736 244715736 T C C1orf101 Missense_Mutation p.F217L 0.17 tolerated(0.13) benign(0.037) TCGA-HU-A4GX-01 1 245005310 245005310 A G COX20 Missense_Mutation p.Y36C 0.25 deleterious(0.03) benign(0.151) TCGA-HU-A4GX-01 1 245848855 245848855 G A KIF26B Missense_Mutation p.S857N 0.23 deleterious(0) unknown(0) TCGA-HU-A4GX-01 1 24681062 24681062 C T GRHL3 Intron 0.33 TCGA-HU-A4GX-01 1 247319909 247319909 T - ZNF124 Frame_Shift_Del p.T277Lfs*31 0.17 TCGA-HU-A4GX-01 1 247614785 247614785 G A OR2B11 Missense_Mutation p.T167M 0.18 deleterious(0.02) probably_damaging(0.999) TCGA-HU-A4GX-01 1 248202418 248202418 G A OR2L2 Missense_Mutation p.M283I 0.23 deleterious(0.01) benign(0.016) TCGA-HU-A4GX-01 1 26135266 26135266 C T SEPN1 Missense_Mutation p.P245S 0.22 tolerated(0.23) possibly_damaging(0.649) TCGA-HU-A4GX-01 1 27100175 27100176 - C ARID1A Frame_Shift_Ins p.Q1327Afs*11 0.26 TCGA-HU-A4GX-01 1 27216284 27216284 G - GPN2 Frame_Shift_Del p.L102Sfs*37 0.19 TCGA-HU-A4GX-01 1 27677020 27677020 C T SYTL1 Intron 0.23 TCGA-HU-A4GX-01 1 27939528 27939528 C T FGR Missense_Mutation p.R496H 0.29 tolerated(0.13) probably_damaging(0.912) TCGA-HU-A4GX-01 1 28128196 28128197 AG - STX12 Frame_Shift_Del p.R100Tfs*9 0.23 TCGA-HU-A4GX-01 1 29391662 29391662 G T EPB41 Nonsense_Mutation p.G726* 0.17 TCGA-HU-A4GX-01 1 29639169 29639169 G A PTPRU Missense_Mutation p.V1070M 0.21 deleterious(0) probably_damaging(1) TCGA-HU-A4GX-01 1 32280862 32280862 G A SPOCD1 Missense_Mutation p.L25F 0.18 tolerated_low_confidence(0.11) possibly_damaging(0.853) TCGA-HU-A4GX-01 1 33116139 33116139 G A ZBTB8OS Missense_Mutation p.P10S 0.27 tolerated_low_confidence(0.45) benign(0) TCGA-HU-A4GX-01 1 33245834 33245834 C - YARS Frame_Shift_Del p.E396Kfs*8 0.23 TCGA-HU-A4GX-01 1 3407028 3407028 T C MEGF6 3'UTR 0.33 TCGA-HU-A4GX-01 1 35334426 35334426 C T DLGAP3 Silent p.S755S 0.24 TCGA-HU-A4GX-01 1 35885120 35885120 C T ZMYM4 Missense_Mutation p.R1497C 0.21 deleterious(0) possibly_damaging(0.515) TCGA-HU-A4GX-01 1 36757044 36757044 G T THRAP3 Missense_Mutation p.Q605H 0.39 deleterious(0.04) probably_damaging(0.977) TCGA-HU-A4GX-01 1 38033290 38033290 G A GNL2 Missense_Mutation p.A676V 0.26 tolerated(0.07) benign(0.018) TCGA-HU-A4GX-01 1 38082196 38082196 T C RSPO1 Silent p.G82G 0.19 TCGA-HU-A4GX-01 1 39494443 39494443 G A NDUFS5 Missense_Mutation p.R16Q 0.32 tolerated(0.24) benign(0.002) TCGA-HU-A4GX-01 1 41303406 41303406 C T KCNQ4 Silent p.S605S 0.35 TCGA-HU-A4GX-01 1 42664774 42664774 G A FOXJ3 Missense_Mutation p.P253L 0.28 deleterious(0.01) benign(0.116) TCGA-HU-A4GX-01 1 43395570 43395570 C T SLC2A1 Missense_Mutation p.R218H 0.26 tolerated(0.09) possibly_damaging(0.839) TCGA-HU-A4GX-01 1 43637888 43637888 A G EBNA1BP2 Intron 0.33 TCGA-HU-A4GX-01 1 43770734 43770734 C T TIE1 Missense_Mutation p.R91C 0.28 deleterious(0) possibly_damaging(0.614) TCGA-HU-A4GX-01 1 43916546 43916546 C A SZT2 3'UTR 0.27 TCGA-HU-A4GX-01 1 44069129 44069129 G A PTPRF Missense_Mutation p.V795I 0.24 tolerated(0.85) benign(0.021) TCGA-HU-A4GX-01 1 44713629 44713629 G A ERI3 Missense_Mutation p.R305W 0.30 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GX-01 1 46497141 46497141 G A MAST2 Missense_Mutation p.R1024H 0.35 tolerated_low_confidence(0.2) probably_damaging(0.999) TCGA-HU-A4GX-01 1 46978180 46978180 A G DMBX1 3'UTR 0.24 TCGA-HU-A4GX-01 1 47399959 47399959 G A CYP4A11 Missense_Mutation p.T326I 0.24 deleterious(0.02) possibly_damaging(0.58) TCGA-HU-A4GX-01 1 47905016 47905016 C T FOXD2 Silent p.G403G 0.46 TCGA-HU-A4GX-01 1 48697257 48697257 G A SLC5A9 Silent p.T242T 0.21 TCGA-HU-A4GX-01 1 50610682 50610682 C T ELAVL4 Silent p.S38S 0.33 TCGA-HU-A4GX-01 1 52704611 52704611 A C ZFYVE9 Missense_Mutation p.I508L 0.37 tolerated_low_confidence(0.07) benign(0.029) TCGA-HU-A4GX-01 1 53543377 53543377 C - PODN Frame_Shift_Del p.P303Rfs*7 0.16 TCGA-HU-A4GX-01 1 59131250 59131250 A G MYSM1 Silent p.Y695Y 0.18 TCGA-HU-A4GX-01 1 5937172 5937172 C T NPHP4 Missense_Mutation p.R933Q 0.23 tolerated(0.59) benign(0.002) TCGA-HU-A4GX-01 1 6257785 6257785 T - RPL22 Frame_Shift_Del p.K15Rfs*5 0.35 TCGA-HU-A4GX-01 1 62739457 62739457 A G KANK4 Missense_Mutation p.M440T 0.27 tolerated(1) benign(0) TCGA-HU-A4GX-01 1 6520062 6520062 A T ESPN Missense_Mutation p.K807N 0.25 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GX-01 1 65895721 65895721 G A LEPROT Missense_Mutation p.R90H 0.20 tolerated(0.21) benign(0.42) TCGA-HU-A4GX-01 1 70504499 70504499 G A LRRC7 Missense_Mutation p.V960M 0.39 deleterious(0) probably_damaging(0.997) TCGA-HU-A4GX-01 1 79107202 79107202 A G IFI44L Missense_Mutation p.D411G 0.30 deleterious(0.04) benign(0.444) TCGA-HU-A4GX-01 1 84412914 84412914 G A TTLL7 Silent p.I133I 0.19 TCGA-HU-A4GX-01 1 89616127 89616127 G A GBP7 Nonsense_Mutation p.R253* 0.21 TCGA-HU-A4GX-01 1 89735134 89735134 C T GBP5 Silent p.T35T 0.26 TCGA-HU-A4GX-01 1 9067390 9067390 C T SLC2A7 Missense_Mutation p.A391T 0.18 tolerated(0.1) benign(0.025) TCGA-HU-A4GX-01 1 9164630 9164630 C T GPR157 Missense_Mutation p.V286I 0.21 tolerated(0.55) benign(0.016) TCGA-HU-A4GX-01 1 92224226 92224226 G - TGFBR3 Frame_Shift_Del p.L110Wfs*5 0.20 TCGA-HU-A4GX-01 1 9324704 9324704 C T H6PD Silent p.L718L 0.27 TCGA-HU-A4GX-01 1 98058781 98058781 G T DPYD Missense_Mutation p.P374H 0.30 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GX-01 1 99771804 99771804 C T LPPR4 Silent p.P510P 0.21 TCGA-HU-A4GX-01 20 13514762 13514762 C T TASP1 Silent p.T234T 0.35 TCGA-HU-A4GX-01 20 13765689 13765689 G A NDUFAF5 5'UTR 0.30 TCGA-HU-A4GX-01 20 1471995 1471995 G A SIRPB2 Missense_Mutation p.T4M 0.21 tolerated_low_confidence(0.27) benign(0.001) TCGA-HU-A4GX-01 20 20037346 20037346 C T C20orf26 Nonsense_Mutation p.R17* 0.37 TCGA-HU-A4GX-01 20 20232281 20232281 C A C20orf26 Nonsense_Mutation p.C734* 0.16 TCGA-HU-A4GX-01 20 21690007 21690007 C - PAX1 Frame_Shift_Del p.A406Pfs*3 0.34 TCGA-HU-A4GX-01 20 23066469 23066469 C - CD93 Frame_Shift_Del p.E121Rfs*79 0.41 TCGA-HU-A4GX-01 20 23346149 23346149 T C GZF1 Missense_Mutation p.F377L 0.15 deleterious(0.03) probably_damaging(0.999) TCGA-HU-A4GX-01 20 23351114 23351114 G A GZF1 3'UTR 0.25 TCGA-HU-A4GX-01 20 23421091 23421091 C T CSTL1 Nonsense_Mutation p.R63* 0.21 TCGA-HU-A4GX-01 20 2637428 2637428 A G NOP56 Missense_Mutation p.T390A 0.16 deleterious(0.01) benign(0.101) TCGA-HU-A4GX-01 20 30584373 30584373 C T XKR7 Missense_Mutation p.R285W 0.21 deleterious(0) probably_damaging(0.932) TCGA-HU-A4GX-01 20 30584709 30584709 G A XKR7 Missense_Mutation p.A397T 0.24 deleterious(0.05) probably_damaging(0.937) TCGA-HU-A4GX-01 20 31022442 31022442 G - ASXL1 Frame_Shift_Del p.G645Vfs*58 0.19 TCGA-HU-A4GX-01 20 31672738 31672738 C T BPIFB4 Missense_Mutation p.R240W 0.17 tolerated(0.05) probably_damaging(0.952) TCGA-HU-A4GX-01 20 33582038 33582038 C T MYH7B Missense_Mutation p.P887L 0.21 probably_damaging(1) TCGA-HU-A4GX-01 20 33764042 33764042 G A PROCR Missense_Mutation p.E132K 0.36 tolerated(0.1) benign(0.118) TCGA-HU-A4GX-01 20 34050329 34050329 A G CEP250 Missense_Mutation p.Q46R 0.29 probably_damaging(0.997) TCGA-HU-A4GX-01 20 34214056 34214056 A - CPNE1 3'UTR 0.16 TCGA-HU-A4GX-01 20 35207307 35207307 G A TGIF2 Missense_Mutation p.A44T 0.19 deleterious(0) probably_damaging(1) TCGA-HU-A4GX-01 20 35443741 35443741 C T SOGA1 Missense_Mutation p.E702K 0.16 tolerated(0.07) possibly_damaging(0.819) TCGA-HU-A4GX-01 20 36640099 36640099 C T TTI1 Missense_Mutation p.R707H 0.17 deleterious(0.04) benign(0.316) TCGA-HU-A4GX-01 20 36850996 36850996 C T KIAA1755 Missense_Mutation p.A758T 0.27 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GX-01 20 37168453 37168453 G A RALGAPB Missense_Mutation p.R805Q 0.16 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GX-01 20 37632537 37632537 G A DHX35 Missense_Mutation p.R333H 0.20 tolerated(0.4) benign(0.001) TCGA-HU-A4GX-01 20 40043836 40043836 G A CHD6 Missense_Mutation p.A2310V 0.17 tolerated(0.11) benign(0.283) TCGA-HU-A4GX-01 20 42328684 42328684 G A MYBL2 Silent p.S317S 0.11 TCGA-HU-A4GX-01 20 43378801 43378801 C T KCNK15 Silent p.S105S 0.30 TCGA-HU-A4GX-01 20 43945492 43945492 C T RBPJL Missense_Mutation p.P483S 0.17 tolerated(0.12) benign(0.009) TCGA-HU-A4GX-01 20 43945567 43945567 C T RBPJL Missense_Mutation p.R508C 0.19 deleterious_low_confidence(0) probably_damaging(0.939) TCGA-HU-A4GX-01 20 43945654 43945654 C T RBPJL 3'UTR 0.12 TCGA-HU-A4GX-01 20 44507168 44507168 G A ZSWIM3 Silent p.Q657Q 0.14 TCGA-HU-A4GX-01 20 44641172 44641172 G - MMP9 Frame_Shift_Del p.L431Cfs*6 0.15 TCGA-HU-A4GX-01 20 45192184 45192184 G A SLC13A3 Missense_Mutation p.R501C 0.12 deleterious(0.01) probably_damaging(0.989) TCGA-HU-A4GX-01 20 45315714 45315714 C T TP53RK Missense_Mutation p.G147E 0.17 deleterious(0) probably_damaging(0.996) TCGA-HU-A4GX-01 20 47244406 47244406 C T PREX1 Missense_Mutation p.R1621Q 0.23 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GX-01 20 47605030 47605030 A - ARFGEF2 Frame_Shift_Del p.N790Ifs*3 0.21 TCGA-HU-A4GX-01 20 47865967 47865967 C T ZNFX1 Silent p.S1198S 0.19 TCGA-HU-A4GX-01 20 47887288 47887288 C T ZNFX1 Missense_Mutation p.R354H 0.13 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GX-01 20 48166701 48166701 G T PTGIS Missense_Mutation p.L34M 0.16 deleterious(0.01) benign(0.215) TCGA-HU-A4GX-01 20 48522803 48522803 G - SPATA2 Frame_Shift_Del p.H306Tfs*202 0.16 TCGA-HU-A4GX-01 20 50139969 50139969 G A NFATC2 Missense_Mutation p.R271C 0.20 deleterious(0.01) benign(0.339) TCGA-HU-A4GX-01 20 50241845 50241845 C T ATP9A Silent p.T634T 0.20 TCGA-HU-A4GX-01 20 50401022 50401022 C T SALL4 Missense_Mutation p.V982M 0.36 tolerated(1) benign(0.003) TCGA-HU-A4GX-01 20 52644857 52644857 G A BCAS1 Intron 0.25 TCGA-HU-A4GX-01 20 55948536 55948536 G A RAE1 Silent p.R216R 0.25 TCGA-HU-A4GX-01 20 56098859 56098859 C T CTCFL Missense_Mutation p.A135T 0.16 tolerated(0.29) benign(0.221) TCGA-HU-A4GX-01 20 57269566 57269566 G A NPEPL1 Missense_Mutation p.R142Q 0.21 tolerated(0.61) benign(0.018) TCGA-HU-A4GX-01 20 57429164 57429164 G A GNAS Missense_Mutation p.G282S 0.09 tolerated_low_confidence(0.38) unknown(0) TCGA-HU-A4GX-01 20 57599419 57599419 G A TUBB1 Missense_Mutation p.V313M 0.22 deleterious_low_confidence(0.02) probably_damaging(0.964) TCGA-HU-A4GX-01 20 6021535 6021535 A G LRRN4 3'UTR 0.29 TCGA-HU-A4GX-01 20 60503335 60503335 C T CDH4 Missense_Mutation p.A620V 0.16 tolerated(0.58) benign(0.011) TCGA-HU-A4GX-01 20 60897206 60897206 C - LAMA5 Frame_Shift_Del p.G2122Afs*87 0.21 TCGA-HU-A4GX-01 20 60913399 60913399 C T LAMA5 Missense_Mutation p.A549T 0.23 benign(0.262) TCGA-HU-A4GX-01 20 61513485 61513486 - T DIDO1 Frame_Shift_Ins p.V1275Sfs*100 0.19 TCGA-HU-A4GX-01 20 61981063 61981063 G A CHRNA4 Missense_Mutation p.A567V 0.13 tolerated(0.19) benign(0.244) TCGA-HU-A4GX-01 20 62038258 62038258 C T KCNQ2 Silent p.T786T 0.19 TCGA-HU-A4GX-01 20 62038661 62038661 G - KCNQ2 Frame_Shift_Del p.P652Rfs*278 0.17 TCGA-HU-A4GX-01 20 62320919 62320920 - C RTEL1 Frame_Shift_Ins p.R675Tfs*15 0.19 TCGA-HU-A4GX-01 20 62853330 62853330 C G MYT1 Missense_Mutation p.P776A 0.11 probably_damaging(0.999) TCGA-HU-A4GX-01 20 62863600 62863600 C T MYT1 Missense_Mutation p.A920V 0.19 probably_damaging(0.999) TCGA-HU-A4GX-01 20 62904883 62904883 G A PCMTD2 Missense_Mutation p.R339H 0.21 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-HU-A4GX-01 20 8630047 8630047 G A PLCB1 Missense_Mutation p.R182Q 0.17 deleterious(0) benign(0.112) TCGA-HU-A4GX-01 20 947857 947857 C T RSPO4 Silent p.P123P 0.18 TCGA-HU-A4GX-01 21 19744529 19744529 G A TMPRSS15 Silent p.D215D 0.25 TCGA-HU-A4GX-01 21 30433672 30433672 C T CCT8 Missense_Mutation p.A451T 0.19 tolerated(1) benign(0.094) TCGA-HU-A4GX-01 21 31802859 31802859 C T KRTAP13-4 Missense_Mutation p.S89F 0.21 deleterious(0.02) benign(0.25) TCGA-HU-A4GX-01 21 34134492 34134492 A G PAXBP1 Silent p.S262S 0.24 TCGA-HU-A4GX-01 21 34655525 34655526 TG - IL10RB Frame_Shift_Del p.C209* 0.11 TCGA-HU-A4GX-01 21 34923050 34923050 G A SON Missense_Mutation p.E505K 0.22 benign(0.305) TCGA-HU-A4GX-01 21 39672321 39672321 C T KCNJ15 3'UTR 0.23 TCGA-HU-A4GX-01 21 40610462 40610462 G A BRWD1 Missense_Mutation p.S840L 0.25 deleterious(0.02) benign(0.154) TCGA-HU-A4GX-01 21 41710097 41710097 C - DSCAM Frame_Shift_Del p.E572Sfs*20 0.20 TCGA-HU-A4GX-01 21 43239979 43239979 T C PRDM15 Missense_Mutation p.H1106R 0.23 deleterious(0) probably_damaging(1) TCGA-HU-A4GX-01 21 45540349 45540349 G A PWP2 Missense_Mutation p.G437R 0.20 deleterious(0) probably_damaging(1) TCGA-HU-A4GX-01 21 45544527 45544527 C T PWP2 Silent p.F628F 0.23 TCGA-HU-A4GX-01 21 45671576 45671576 C A DNMT3L Missense_Mutation p.E233D 0.27 tolerated(0.15) benign(0.008) TCGA-HU-A4GX-01 21 45855098 45855098 G A TRPM2 Silent p.T1353T 0.21 TCGA-HU-A4GX-01 21 45949813 45949813 G A TSPEAR Silent p.L220L 0.33 TCGA-HU-A4GX-01 21 45950952 45950952 G A TSPEAR Missense_Mutation p.R203W 0.27 deleterious(0) probably_damaging(0.983) TCGA-HU-A4GX-01 21 45971168 45971168 G A KRTAP10-2 Silent p.C58C 0.27 TCGA-HU-A4GX-01 21 45994612 45994612 T C KRTAP10-4 Missense_Mutation p.V326A 0.25 tolerated(0.19) unknown(0) TCGA-HU-A4GX-01 21 46596126 46596126 C T ADARB1 Silent p.A170A 0.27 TCGA-HU-A4GX-01 21 47423591 47423591 C T COL6A1 Silent p.N917N 0.25 TCGA-HU-A4GX-01 21 47571587 47571587 G A FTCD Missense_Mutation p.T174M 0.26 deleterious(0.01) probably_damaging(0.996) TCGA-HU-A4GX-01 21 47865350 47865350 G A PCNT 3'UTR 0.25 TCGA-HU-A4GX-01 21 48068533 48068533 T C PRMT2 Splice_Site p.X163_splice 0.21 TCGA-HU-A4GX-01 22 16449487 16449488 - T OR11H1 Frame_Shift_Ins p.N106Kfs*31 0.26 TCGA-HU-A4GX-01 22 17589491 17589491 G - IL17RA Frame_Shift_Del p.A463Rfs*21 0.27 TCGA-HU-A4GX-01 22 20230131 20230131 G A RTN4R Silent p.R175R 0.29 TCGA-HU-A4GX-01 22 20936976 20936976 C - MED15 Frame_Shift_Del p.Q453Sfs*41 0.28 TCGA-HU-A4GX-01 22 21087260 21087261 - G PI4KA Frame_Shift_Ins p.D1430Rfs*2 0.13 TCGA-HU-A4GX-01 22 21340148 21340150 CCT - LZTR1 In_Frame_Del p.L96del 0.25 TCGA-HU-A4GX-01 22 21989326 21989326 G A CCDC116 Missense_Mutation p.R325H 0.28 deleterious(0.02) probably_damaging(0.92) TCGA-HU-A4GX-01 22 21989345 21989345 C T CCDC116 Silent p.D331D 0.25 TCGA-HU-A4GX-01 22 24560391 24560391 C T CABIN1 Silent p.D1590D 0.30 TCGA-HU-A4GX-01 22 24574189 24574189 C T CABIN1 3'UTR 0.14 TCGA-HU-A4GX-01 22 24580158 24580158 G A SUSD2 Missense_Mutation p.R165H 0.29 tolerated(0.19) benign(0.002) TCGA-HU-A4GX-01 22 25294248 25294248 G A SGSM1 Missense_Mutation p.V833M 0.35 tolerated(0.22) benign(0.34) TCGA-HU-A4GX-01 22 26862218 26862218 G A HPS4 Missense_Mutation p.T227M 0.33 tolerated(0.08) benign(0.024) TCGA-HU-A4GX-01 22 28196403 28196403 C - MN1 Frame_Shift_Del p.P45Lfs*8 0.21 TCGA-HU-A4GX-01 22 29956813 29956813 G A NIPSNAP1 Missense_Mutation p.R206W 0.21 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GX-01 22 30660116 30660117 - C OSM Frame_Shift_Ins p.A172Gfs*122 0.19 TCGA-HU-A4GX-01 22 30660134 30660134 G A OSM Missense_Mutation p.T166M 0.18 tolerated(0.06) probably_damaging(0.993) TCGA-HU-A4GX-01 22 31042594 31042594 T G SLC35E4 Missense_Mutation p.L210R 0.32 deleterious(0) probably_damaging(0.995) TCGA-HU-A4GX-01 22 31285625 31285625 T C OSBP2 Splice_Site p.X541_splice 0.24 TCGA-HU-A4GX-01 22 38322027 38322027 G A MICALL1 Missense_Mutation p.R481H 0.59 deleterious(0.01) probably_damaging(0.912) TCGA-HU-A4GX-01 22 38823826 38823826 G A KCNJ4 Silent p.G104G 0.49 TCGA-HU-A4GX-01 22 38824116 38824116 C T KCNJ4 Missense_Mutation p.G8S 0.49 tolerated(0.17) benign(0.194) TCGA-HU-A4GX-01 22 39907950 39907950 C T MIEF1 Nonsense_Mutation p.R81* 0.48 TCGA-HU-A4GX-01 22 42522946 42522946 C T CYP2D6 Missense_Mutation p.V408I 0.17 tolerated(0.23) benign(0.002) TCGA-HU-A4GX-01 22 42536347 42536347 C T NDUFA6-AS1 3'Flank 0.44 TCGA-HU-A4GX-01 22 42537172 42537172 C T NDUFA6-AS1 3'Flank 0.38 TCGA-HU-A4GX-01 22 43447858 43447858 G A TTLL1 Silent p.C309C 0.46 TCGA-HU-A4GX-01 22 45601544 45601544 G A KIAA0930 Silent p.G132G 0.49 TCGA-HU-A4GX-01 22 46655628 46655628 C T PKDREJ Missense_Mutation p.V1198M 0.47 tolerated(0.18) benign(0.015) TCGA-HU-A4GX-01 22 46761168 46761168 T - CELSR1 Frame_Shift_Del p.K2838Nfs*45 0.34 TCGA-HU-A4GX-01 22 50472806 50472806 G A TTLL8 Missense_Mutation p.A356V 0.12 deleterious(0) probably_damaging(0.976) TCGA-HU-A4GX-01 22 50615416 50615416 C T PANX2 Missense_Mutation p.A92V 0.59 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GX-01 22 50636357 50636357 C T TRABD Silent p.R259R 0.47 TCGA-HU-A4GX-01 22 50682481 50682481 G A TUBGCP6 Silent p.N136N 0.49 TCGA-HU-A4GX-01 22 50684142 50684142 G T HDAC10 Missense_Mutation p.L650M 0.11 deleterious(0.03) probably_damaging(0.999) TCGA-HU-A4GX-01 22 51214269 51214269 G A RABL2B Silent p.D76D 0.34 TCGA-HU-A4GX-01 2 100015340 100015340 C T EIF5B Missense_Mutation p.H1175Y 0.26 probably_damaging(0.999) TCGA-HU-A4GX-01 2 109380371 109380371 C T RANBP2 Missense_Mutation p.R1126W 0.16 deleterious(0) benign(0.378) TCGA-HU-A4GX-01 2 113942944 113942945 CT - PSD4 Frame_Shift_Del p.L394Qfs*3 0.18 TCGA-HU-A4GX-01 2 120836150 120836150 T - EPB41L5 Frame_Shift_Del p.W268Gfs*4 0.28 TCGA-HU-A4GX-01 2 121712924 121712924 C T GLI2 Silent p.P187P 0.21 TCGA-HU-A4GX-01 2 128867246 128867247 - T UGGT1 Frame_Shift_Ins p.S152Ffs*9 0.11 TCGA-HU-A4GX-01 2 130902531 130902531 G - CCDC74B Frame_Shift_Del p.S14Afs*21 0.23 TCGA-HU-A4GX-01 2 136673804 136673804 G A DARS Silent p.D366D 0.28 TCGA-HU-A4GX-01 2 141528516 141528516 C - LRP1B Frame_Shift_Del p.E1854Kfs*24 0.21 TCGA-HU-A4GX-01 2 1480855 1480855 C T TPO Intron 0.27 TCGA-HU-A4GX-01 2 1497755 1497755 G A TPO Silent p.G650G 0.25 TCGA-HU-A4GX-01 2 153476212 153476212 T C FMNL2 Missense_Mutation p.V606A 0.19 benign(0.294) TCGA-HU-A4GX-01 2 15679412 15679412 C T NBAS Missense_Mutation p.A150T 0.13 deleterious(0.02) possibly_damaging(0.791) TCGA-HU-A4GX-01 2 15771006 15771006 T C DDX1 Silent p.P733P 0.31 TCGA-HU-A4GX-01 2 158115711 158115711 C A GALNT5 Missense_Mutation p.P373T 0.21 tolerated(0.6) benign(0.055) TCGA-HU-A4GX-01 2 162280036 162280036 G A TBR1 Silent p.A449A 0.30 TCGA-HU-A4GX-01 2 166245972 166245972 T C SCN2A Missense_Mutation p.S1886P 0.21 deleterious(0) possibly_damaging(0.72) TCGA-HU-A4GX-01 2 166514383 166514384 - G CSRNP3 Frame_Shift_Ins p.S90Kfs*10 0.18 TCGA-HU-A4GX-01 2 170428529 170428530 - T FASTKD1 Frame_Shift_Ins p.T4Nfs*34 0.32 TCGA-HU-A4GX-01 2 172945088 172945088 C T METAP1D Missense_Mutation p.T321M 0.26 deleterious(0) probably_damaging(0.996) TCGA-HU-A4GX-01 2 174052313 174052313 C T MLTK Missense_Mutation p.P126L 0.19 deleterious(0.02) probably_damaging(1) TCGA-HU-A4GX-01 2 179397303 179397303 C A TTN Missense_Mutation p.R34680M 0.25 TCGA-HU-A4GX-01 2 179428319 179428319 C T TTN Missense_Mutation p.V27514I 0.26 TCGA-HU-A4GX-01 2 179457588 179457588 T C TTN Missense_Mutation p.Y19753C 0.23 TCGA-HU-A4GX-01 2 179647781 179647781 T - TTN Frame_Shift_Del p.N951Mfs*2 0.20 TCGA-HU-A4GX-01 2 18112824 18112824 C T KCNS3 Silent p.S183S 0.33 TCGA-HU-A4GX-01 2 182542721 182542721 C T NEUROD1 Silent p.P289P 0.17 TCGA-HU-A4GX-01 2 187618752 187618752 G A FAM171B Missense_Mutation p.A330T 0.29 deleterious(0) possibly_damaging(0.841) TCGA-HU-A4GX-01 2 189863442 189863442 A G COL3A1 Missense_Mutation p.K674E 0.38 unknown(0) TCGA-HU-A4GX-01 2 1926216 1926216 G A MYT1L Missense_Mutation p.T442M 0.26 deleterious(0) probably_damaging(0.947) TCGA-HU-A4GX-01 2 197657704 197657704 A G GTF3C3 Silent p.N129N 0.21 TCGA-HU-A4GX-01 2 1983514 1983514 C T MYT1L Silent p.T12T 0.21 TCGA-HU-A4GX-01 2 201436992 201436992 A - SGOL2 Frame_Shift_Del p.G644Vfs*18 0.23 TCGA-HU-A4GX-01 2 202900994 202900994 A G FZD7 Missense_Mutation p.I542V 0.22 tolerated(0.06) probably_damaging(0.923) TCGA-HU-A4GX-01 2 203383617 203383617 T - BMPR2 Frame_Shift_Del p.S233Pfs*19 0.23 TCGA-HU-A4GX-01 2 20453761 20453761 T - PUM2 Frame_Shift_Del p.K962Sfs*14 0.14 TCGA-HU-A4GX-01 2 206166298 206166298 A - PARD3B Frame_Shift_Del p.T775Rfs*13 0.25 TCGA-HU-A4GX-01 2 207006766 207006768 AAG - NDUFS1 In_Frame_Del p.L401del 0.29 TCGA-HU-A4GX-01 2 209358139 209358139 C T PTH2R Missense_Mutation p.R470C 0.35 deleterious(0) possibly_damaging(0.8) TCGA-HU-A4GX-01 2 210561667 210561667 A - MAP2 Frame_Shift_Del p.T1474Qfs*14 0.17 TCGA-HU-A4GX-01 2 210570356 210570356 C T MAP2 Missense_Mutation p.S1546F 0.13 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GX-01 2 215872505 215872505 C T ABCA12 Silent p.S846S 0.19 TCGA-HU-A4GX-01 2 215890463 215890463 T - ABCA12 Frame_Shift_Del p.K407Nfs*20 0.27 TCGA-HU-A4GX-01 2 218696225 218696225 C T TNS1 Missense_Mutation p.G984D 0.20 deleterious(0) probably_damaging(1) TCGA-HU-A4GX-01 2 219028909 219028909 C T CXCR1 Silent p.S342S 0.18 TCGA-HU-A4GX-01 2 219294155 219294155 G A VIL1 Missense_Mutation p.A239T 0.19 tolerated(0.07) benign(0.143) TCGA-HU-A4GX-01 2 219498840 219498840 T C PLCD4 Missense_Mutation p.V540A 0.27 deleterious(0.02) probably_damaging(0.97) TCGA-HU-A4GX-01 2 219846895 219846895 C A FEV Missense_Mutation p.G71C 0.21 deleterious(0) probably_damaging(0.974) TCGA-HU-A4GX-01 2 219920566 219920566 G A IHH Missense_Mutation p.T200M 0.38 deleterious(0.02) probably_damaging(0.993) TCGA-HU-A4GX-01 2 220405701 220405701 C A CHPF Silent p.L345L 0.08 TCGA-HU-A4GX-01 2 220427220 220427220 G A OBSL1 Missense_Mutation p.R953C 0.27 tolerated(0.18) probably_damaging(0.999) TCGA-HU-A4GX-01 2 220428091 220428091 G A OBSL1 Missense_Mutation p.T889I 0.16 deleterious(0) possibly_damaging(0.886) TCGA-HU-A4GX-01 2 220476441 220476441 G A STK11IP Silent p.P751P 0.24 TCGA-HU-A4GX-01 2 223161807 223161807 C T PAX3 Missense_Mutation p.V71I 0.21 tolerated(0.1) probably_damaging(0.976) TCGA-HU-A4GX-01 2 225669993 225669993 G A DOCK10 Silent p.D1327D 0.21 TCGA-HU-A4GX-01 2 225729790 225729790 A - DOCK10 Frame_Shift_Del p.F424Lfs*2 0.22 TCGA-HU-A4GX-01 2 225750838 225750838 G A DOCK10 Missense_Mutation p.S185F 0.22 deleterious(0) possibly_damaging(0.836) TCGA-HU-A4GX-01 2 228228611 228228611 A G TM4SF20 Silent p.S173S 0.19 TCGA-HU-A4GX-01 2 232262821 232262822 - G B3GNT7 Frame_Shift_Ins p.D133Rfs*110 0.27 TCGA-HU-A4GX-01 2 239016577 239016577 C - ESPNL Frame_Shift_Del p.L275Sfs*16 0.25 TCGA-HU-A4GX-01 2 239757216 239757216 C T TWIST2 Silent p.V120V 0.42 TCGA-HU-A4GX-01 2 240036871 240036871 C T HDAC4 Missense_Mutation p.A552T 0.19 tolerated(0.74) benign(0.001) TCGA-HU-A4GX-01 2 240984626 240984626 C T OR6B3 Silent p.L288L 0.22 TCGA-HU-A4GX-01 2 241069366 241069366 G A MYEOV2 Missense_Mutation p.R115C 0.13 deleterious_low_confidence(0) unknown(0) TCGA-HU-A4GX-01 2 241512589 241512589 C T RNPEPL1 Silent p.G13G 0.15 TCGA-HU-A4GX-01 2 241708580 241708580 G A KIF1A Silent p.G489G 0.24 TCGA-HU-A4GX-01 2 242438753 242438753 C T STK25 Silent p.T168T 0.25 TCGA-HU-A4GX-01 2 25038554 25038554 C T CENPO Missense_Mutation p.H175Y 0.24 deleterious(0.02) possibly_damaging(0.765) TCGA-HU-A4GX-01 2 25141779 25141779 G A ADCY3 Silent p.S26S 0.31 TCGA-HU-A4GX-01 2 26698267 26698267 G A OTOF Missense_Mutation p.P1029L 0.27 deleterious(0) probably_damaging(0.978) TCGA-HU-A4GX-01 2 27360640 27360640 G A C2orf53 Silent p.S186S 0.28 TCGA-HU-A4GX-01 2 27430328 27430328 C T SLC5A6 Missense_Mutation p.R64H 0.25 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GX-01 2 27457496 27457496 G - CAD Frame_Shift_Del p.E1245Kfs*8 0.18 TCGA-HU-A4GX-01 2 27478188 27478188 G - SLC30A3 Frame_Shift_Del p.Q387Kfs*78 0.26 TCGA-HU-A4GX-01 2 27592748 27592748 G A EIF2B4 Missense_Mutation p.P45S 0.30 deleterious_low_confidence(0.01) benign(0.121) TCGA-HU-A4GX-01 2 27803796 27803796 C T C2orf16 Nonsense_Mutation p.R1453* 0.26 TCGA-HU-A4GX-01 2 28821628 28821628 G A PLB1 Splice_Site p.X825_splice 0.31 TCGA-HU-A4GX-01 2 29416518 29416518 C T ALK Missense_Mutation p.A1479T 0.27 tolerated(0.07) probably_damaging(0.998) TCGA-HU-A4GX-01 2 31178570 31178570 C T GALNT14 Missense_Mutation p.A195T 0.28 deleterious(0) possibly_damaging(0.853) TCGA-HU-A4GX-01 2 31567565 31567565 G A XDH Missense_Mutation p.A1130V 0.21 deleterious(0) possibly_damaging(0.861) TCGA-HU-A4GX-01 2 33952599 33952599 G A AC009499.1 Intron 0.27 TCGA-HU-A4GX-01 2 50280512 50280512 G A NRXN1 Missense_Mutation p.A1382V 0.28 tolerated(0.11) benign(0.03) TCGA-HU-A4GX-01 2 55254422 55254422 T C RTN4 Silent p.E271E 0.20 TCGA-HU-A4GX-01 2 55900055 55900055 G A PNPT1 Missense_Mutation p.S280L 0.27 tolerated(0.31) benign(0.001) TCGA-HU-A4GX-01 2 58362312 58362312 G T VRK2 Missense_Mutation p.W278C 0.22 tolerated(0.63) benign(0.308) TCGA-HU-A4GX-01 2 58366815 58366815 T - VRK2 Frame_Shift_Del p.L292Wfs*7 0.14 TCGA-HU-A4GX-01 2 58392978 58392978 A - FANCL Frame_Shift_Del p.L196Wfs*4 0.14 TCGA-HU-A4GX-01 2 60688199 60688200 - C BCL11A Frame_Shift_Ins p.L617Pfs*18 0.20 TCGA-HU-A4GX-01 2 60688451 60688451 C T BCL11A Silent p.A532A 0.38 TCGA-HU-A4GX-01 2 68385129 68385130 - A PNO1 Frame_Shift_Ins p.G24Wfs*10 0.14 TCGA-HU-A4GX-01 2 70890765 70890765 G A ADD2 Missense_Mutation p.A658V 0.11 tolerated(0.57) benign(0) TCGA-HU-A4GX-01 2 70904970 70904970 T C ADD2 Missense_Mutation p.M475V 0.21 tolerated(0.37) benign(0.008) TCGA-HU-A4GX-01 2 70919573 70919573 G A ADD2 Missense_Mutation p.R223C 0.26 deleterious(0) probably_damaging(0.975) TCGA-HU-A4GX-01 2 7179959 7179959 G A RNF144A 3'UTR 0.23 TCGA-HU-A4GX-01 2 74328185 74328185 G A TET3 Missense_Mutation p.E1289K 0.23 tolerated(0.66) probably_damaging(0.917) TCGA-HU-A4GX-01 2 74684957 74684957 C A INO80B Missense_Mutation p.P346H 0.23 deleterious_low_confidence(0) unknown(0) TCGA-HU-A4GX-01 2 8871439 8871439 G A KIDINS220 Missense_Mutation p.A1576V 0.31 deleterious_low_confidence(0.04) benign(0.185) TCGA-HU-A4GX-01 2 96781543 96781543 G A ADRA2B Missense_Mutation p.R116C 0.17 deleterious(0) benign(0.263) TCGA-HU-A4GX-01 2 98351887 98351887 C T ZAP70 Silent p.G419G 0.24 TCGA-HU-A4GX-01 3 100020960 100020960 A G TBC1D23 Missense_Mutation p.E381G 0.19 tolerated(0.25) benign(0.406) TCGA-HU-A4GX-01 3 100071247 100071247 G A NIT2 Splice_Site p.X195_splice 0.26 TCGA-HU-A4GX-01 3 101389993 101389993 C A ZBTB11 Missense_Mutation p.E253D 0.10 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GX-01 3 112299461 112299461 C T SLC35A5 Missense_Mutation p.A166V 0.24 deleterious(0.05) benign(0.201) TCGA-HU-A4GX-01 3 120121742 120121742 A G FSTL1 Missense_Mutation p.Y240H 0.22 deleterious(0) probably_damaging(0.982) TCGA-HU-A4GX-01 3 121341390 121341390 C T FBXO40 Missense_Mutation p.P372S 0.22 deleterious(0.02) possibly_damaging(0.476) TCGA-HU-A4GX-01 3 122632217 122632217 A G SEMA5B Missense_Mutation p.W833R 0.19 deleterious(0) probably_damaging(0.972) TCGA-HU-A4GX-01 3 122632729 122632729 C T SEMA5B Missense_Mutation p.C757Y 0.22 deleterious(0) probably_damaging(1) TCGA-HU-A4GX-01 3 122632812 122632812 C A SEMA5B Silent p.L729L 0.09 TCGA-HU-A4GX-01 3 122680142 122680142 C T SEMA5B Missense_Mutation p.G44D 0.23 deleterious_low_confidence(0) probably_damaging(0.97) TCGA-HU-A4GX-01 3 122864994 122864994 G A PDIA5 Missense_Mutation p.A344T 0.21 deleterious(0.01) possibly_damaging(0.733) TCGA-HU-A4GX-01 3 123021992 123021992 C T ADCY5 Silent p.A878A 0.31 TCGA-HU-A4GX-01 3 124209614 124209614 G A KALRN Silent p.S1488S 0.16 TCGA-HU-A4GX-01 3 124456635 124456636 - A UMPS Frame_Shift_Ins p.M179Nfs*12 0.12 TCGA-HU-A4GX-01 3 126741039 126741039 C T PLXNA1 Missense_Mutation p.R1384C 0.30 deleterious(0.01) probably_damaging(0.984) TCGA-HU-A4GX-01 3 126751418 126751418 C T PLXNA1 Missense_Mutation p.P1807L 0.33 deleterious(0) probably_damaging(1) TCGA-HU-A4GX-01 3 126915571 126915571 C T C3orf56 Missense_Mutation p.R15C 0.18 tolerated_low_confidence(0.2) possibly_damaging(0.835) TCGA-HU-A4GX-01 3 127299026 127299026 C T TPRA1 Intron 0.30 TCGA-HU-A4GX-01 3 127390358 127390358 G A PODXL2 Missense_Mutation p.V503M 0.23 deleterious(0) probably_damaging(0.982) TCGA-HU-A4GX-01 3 128126962 128126962 C T EEFSEC Missense_Mutation p.R551W 0.27 deleterious(0) possibly_damaging(0.757) TCGA-HU-A4GX-01 3 12856866 12856866 G T CAND2 Missense_Mutation p.K411N 0.23 tolerated(0.49) benign(0.185) TCGA-HU-A4GX-01 3 128780857 128780857 G A GP9 Missense_Mutation p.S92N 0.36 tolerated(1) benign(0.218) TCGA-HU-A4GX-01 3 130287203 130287203 G A COL6A6 Missense_Mutation p.R719Q 0.24 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GX-01 3 131206557 131206557 C T MRPL3 Missense_Mutation p.R199H 0.36 deleterious(0) possibly_damaging(0.545) TCGA-HU-A4GX-01 3 132184898 132184898 T C DNAJC13 Missense_Mutation p.L651S 0.24 deleterious(0) probably_damaging(0.963) TCGA-HU-A4GX-01 3 133475800 133475800 C T TF Nonsense_Mutation p.R273* 0.21 TCGA-HU-A4GX-01 3 13546059 13546059 G A HDAC11 Missense_Mutation p.R307H 0.15 tolerated(0.06) benign(0.035) TCGA-HU-A4GX-01 3 13612417 13612417 G A FBLN2 Missense_Mutation p.D188N 0.15 tolerated(0.06) possibly_damaging(0.894) TCGA-HU-A4GX-01 3 14563212 14563212 C A GRIP2 RNA 0.17 TCGA-HU-A4GX-01 3 149192694 149192694 G - TM4SF4 Frame_Shift_Del p.T13Pfs*23 0.24 TCGA-HU-A4GX-01 3 151165427 151165427 G - IGSF10 Frame_Shift_Del p.P781Qfs*34 0.17 TCGA-HU-A4GX-01 3 167068281 167068283 TCT - ZBBX In_Frame_Del p.E151del 0.30 TCGA-HU-A4GX-01 3 167319962 167319962 G T WDR49 Missense_Mutation p.Q69K 0.19 deleterious(0.01) possibly_damaging(0.703) TCGA-HU-A4GX-01 3 169802628 169802628 A G GPR160 Missense_Mutation p.T290A 0.34 tolerated(0.88) benign(0.004) TCGA-HU-A4GX-01 3 170857277 170857277 A G TNIK Silent p.H467H 0.29 TCGA-HU-A4GX-01 3 171320972 171320972 G A PLD1 Missense_Mutation p.R1041C 0.22 deleterious(0) possibly_damaging(0.776) TCGA-HU-A4GX-01 3 172834946 172834946 G A SPATA16 Silent p.Y192Y 0.20 TCGA-HU-A4GX-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.19 tolerated(0.11) possibly_damaging(0.529) TCGA-HU-A4GX-01 3 182602674 182602674 T - ATP11B Frame_Shift_Del p.Y884Ifs*30 0.39 TCGA-HU-A4GX-01 3 183823105 183823105 G A HTR3E Missense_Mutation p.A230T 0.29 tolerated(1) benign(0.004) TCGA-HU-A4GX-01 3 183905683 183905683 A G ABCF3 Missense_Mutation p.S161G 0.21 deleterious(0.05) benign(0.354) TCGA-HU-A4GX-01 3 18393520 18393520 C T SATB1 Silent p.P581P 0.27 TCGA-HU-A4GX-01 3 184045702 184045702 C T EIF4G1 Missense_Mutation p.R1296C 0.30 deleterious(0) probably_damaging(0.99) TCGA-HU-A4GX-01 3 184093761 184093761 G A THPO Missense_Mutation p.T19M 0.21 deleterious(0) possibly_damaging(0.891) TCGA-HU-A4GX-01 3 185198156 185198156 C T MAP3K13 Missense_Mutation p.R880C 0.29 deleterious_low_confidence(0.03) benign(0.001) TCGA-HU-A4GX-01 3 186504345 186504345 T A EIF4A2 Missense_Mutation p.F228I 0.23 deleterious(0.01) possibly_damaging(0.554) TCGA-HU-A4GX-01 3 194790465 194790465 G A XXYLT1 Silent p.N387N 0.24 TCGA-HU-A4GX-01 3 195800860 195800860 A G TFRC Silent p.D125D 0.29 TCGA-HU-A4GX-01 3 196675210 196675210 C T PIGZ Silent p.T186T 0.21 TCGA-HU-A4GX-01 3 197553754 197553754 G A LRCH3 Missense_Mutation p.A216T 0.30 deleterious(0) benign(0.13) TCGA-HU-A4GX-01 3 27460061 27460061 T A SLC4A7 Missense_Mutation p.E516D 0.22 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GX-01 3 32574559 32574559 T C DYNC1LI1 Missense_Mutation p.I333M 0.15 deleterious(0) probably_damaging(0.993) TCGA-HU-A4GX-01 3 33686903 33686903 A - CLASP2 Intron 0.22 TCGA-HU-A4GX-01 3 36534721 36534721 G T STAC Missense_Mutation p.V256L 0.31 deleterious(0.05) possibly_damaging(0.496) TCGA-HU-A4GX-01 3 36779171 36779171 G A DCLK3 Missense_Mutation p.T327M 0.22 tolerated(0.22) benign(0.009) TCGA-HU-A4GX-01 3 36872364 36872364 C T TRANK1 Missense_Mutation p.A2860T 0.31 deleterious(0) possibly_damaging(0.879) TCGA-HU-A4GX-01 3 38051523 38051523 G A PLCD1 Silent p.L408L 0.21 TCGA-HU-A4GX-01 3 38781010 38781010 C T SCN10A Missense_Mutation p.R759H 0.18 deleterious(0) probably_damaging(0.997) TCGA-HU-A4GX-01 3 38781162 38781162 A - SCN10A Frame_Shift_Del p.F708Lfs*32 0.24 TCGA-HU-A4GX-01 3 3888033 3888033 T C LRRN1 Missense_Mutation p.Y570H 0.24 tolerated(0.19) benign(0.099) TCGA-HU-A4GX-01 3 436506 436506 G T CHL1 Missense_Mutation p.Q1015H 0.18 tolerated(0.12) benign(0.183) TCGA-HU-A4GX-01 3 44968127 44968127 C T ZDHHC3 3'UTR 0.35 TCGA-HU-A4GX-01 3 48455445 48455445 C A PLXNB1 Missense_Mutation p.E1415D 0.35 deleterious(0) benign(0.376) TCGA-HU-A4GX-01 3 50129622 50129622 G A RBM5 Missense_Mutation p.R55Q 0.42 tolerated(0.08) benign(0.238) TCGA-HU-A4GX-01 3 50334626 50334626 C T NAT6 Missense_Mutation p.R112H 0.30 deleterious(0) probably_damaging(1) TCGA-HU-A4GX-01 3 51743432 51743432 A G GRM2 Missense_Mutation p.S145G 0.39 deleterious(0) probably_damaging(0.989) TCGA-HU-A4GX-01 3 51747011 51747011 A G GRM2 Missense_Mutation p.S325G 0.43 tolerated(0.22) benign(0) TCGA-HU-A4GX-01 3 52425268 52425268 G A DNAH1 Missense_Mutation p.R3272H 0.38 probably_damaging(0.992) TCGA-HU-A4GX-01 3 52443937 52443937 C A BAP1 5'UTR 0.49 TCGA-HU-A4GX-01 3 52643771 52643771 T - PBRM1 Frame_Shift_Del p.I709Ffs*5 0.22 TCGA-HU-A4GX-01 3 52842772 52842772 C A ITIH3 3'UTR 0.54 TCGA-HU-A4GX-01 3 53845218 53845218 G A CACNA1D Missense_Mutation p.A2111T 0.34 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-HU-A4GX-01 3 54905647 54905647 G A CACNA2D3 Missense_Mutation p.V570M 0.14 tolerated(0.52) benign(0.015) TCGA-HU-A4GX-01 3 57276921 57276921 A - APPL1 Frame_Shift_Del p.R154Efs*6 0.39 TCGA-HU-A4GX-01 3 57619023 57619023 A - DENND6A Frame_Shift_Del p.L441Wfs*3 0.23 TCGA-HU-A4GX-01 3 58067447 58067448 - G FLNB Frame_Shift_Ins p.A246Gfs*49 0.18 TCGA-HU-A4GX-01 3 58410518 58410518 C A PXK Missense_Mutation p.P523Q 0.21 deleterious(0.03) benign(0.326) TCGA-HU-A4GX-01 3 65415259 65415259 T G MAGI1 Missense_Mutation p.Q701H 0.26 deleterious(0) probably_damaging(0.981) TCGA-HU-A4GX-01 3 70008489 70008489 G A MITF Missense_Mutation p.R360Q 0.13 deleterious(0.02) benign(0.402) TCGA-HU-A4GX-01 3 71064695 71064698 CTTA - FOXP1 Splice_Site p.X327_splice 0.23 TCGA-HU-A4GX-01 3 9426301 9426301 A G THUMPD3 Missense_Mutation p.T485A 0.23 tolerated(0.06) possibly_damaging(0.638) TCGA-HU-A4GX-01 3 9862122 9862122 C T TTLL3 Intron 0.30 TCGA-HU-A4GX-01 3 99568682 99568682 T A FILIP1L Missense_Mutation p.K613I 0.29 deleterious(0.01) possibly_damaging(0.759) TCGA-HU-A4GX-01 4 107956720 107956720 G A DKK2 Missense_Mutation p.S10L 0.26 tolerated(0.32) benign(0.003) TCGA-HU-A4GX-01 4 110662031 110662032 - AG CFI 3'UTR 0.22 TCGA-HU-A4GX-01 4 113351602 113351602 A G ALPK1 Splice_Site p.X301_splice 0.14 TCGA-HU-A4GX-01 4 114213628 114213628 C T ANK2 Silent p.N778N 0.18 TCGA-HU-A4GX-01 4 125590728 125590728 G - ANKRD50 Frame_Shift_Del p.P1235Hfs*8 0.19 TCGA-HU-A4GX-01 4 1388513 1388513 G A CRIPAK Missense_Mutation p.V72M 0.13 tolerated(0.17) possibly_damaging(0.781) TCGA-HU-A4GX-01 4 140394218 140394218 C - RAB33B Frame_Shift_Del p.P211Lfs*7 0.17 TCGA-HU-A4GX-01 4 146041093 146041093 T - ABCE1 Frame_Shift_Del p.L313Wfs*10 0.17 TCGA-HU-A4GX-01 4 149356340 149356340 T G NR3C2 Missense_Mutation p.E558A 0.27 deleterious(0.02) possibly_damaging(0.636) TCGA-HU-A4GX-01 4 156850846 156850848 TCT - CTSO In_Frame_Del p.E228del 0.46 TCGA-HU-A4GX-01 4 163032485 163032485 G A FSTL5 Missense_Mutation p.P22S 0.26 tolerated_low_confidence(0.17) probably_damaging(0.986) TCGA-HU-A4GX-01 4 166022023 166022023 A G TMEM192 Missense_Mutation p.F66L 0.25 tolerated(0.15) benign(0.072) TCGA-HU-A4GX-01 4 166935620 166935620 G A TLL1 Missense_Mutation p.R317H 0.23 tolerated(0.1) possibly_damaging(0.651) TCGA-HU-A4GX-01 4 170613412 170613412 G A CLCN3 Missense_Mutation p.G293R 0.27 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GX-01 4 17835966 17835966 G T NCAPG Missense_Mutation p.K643N 0.24 tolerated(0.05) benign(0.103) TCGA-HU-A4GX-01 4 184931728 184931728 C A STOX2 Silent p.P579P 0.29 TCGA-HU-A4GX-01 4 186544971 186544971 C T SORBS2 Missense_Mutation p.V634I 0.26 tolerated(0.49) benign(0.053) TCGA-HU-A4GX-01 4 20597433 20597433 C T SLIT2 Missense_Mutation p.T1099M 0.29 deleterious(0) probably_damaging(1) TCGA-HU-A4GX-01 4 2343294 2343294 G - ZFYVE28 Frame_Shift_Del p.Q77Rfs*39 0.17 TCGA-HU-A4GX-01 4 247388 247388 A G ZNF876P RNA 0.27 TCGA-HU-A4GX-01 4 3417807 3417807 C T RGS12 Missense_Mutation p.R796C 0.22 deleterious(0.01) possibly_damaging(0.83) TCGA-HU-A4GX-01 4 3444828 3444828 G A HGFAC Missense_Mutation p.R117H 0.31 deleterious(0.02) benign(0.212) TCGA-HU-A4GX-01 4 3446081 3446081 C T HGFAC Silent p.G214G 0.21 TCGA-HU-A4GX-01 4 41956157 41956159 AGA - TMEM33 In_Frame_Del p.R230del 0.21 TCGA-HU-A4GX-01 4 419621 419621 C T ABCA11P RNA 0.19 TCGA-HU-A4GX-01 4 46263976 46263976 C T GABRA2 Nonsense_Mutation p.W342* 0.30 TCGA-HU-A4GX-01 4 47517633 47517633 G A ATP10D Missense_Mutation p.R144Q 0.25 deleterious(0.04) benign(0.382) TCGA-HU-A4GX-01 4 52943101 52943101 G A SPATA18 Silent p.R305R 0.28 TCGA-HU-A4GX-01 4 53492314 53492314 T - USP46 Frame_Shift_Del p.K144Nfs*6 0.14 TCGA-HU-A4GX-01 4 54325743 54325743 T - FIP1L1 3'UTR 0.30 TCGA-HU-A4GX-01 4 57301771 57301771 C T PPAT 5'UTR 0.26 TCGA-HU-A4GX-01 4 5731072 5731072 C T EVC Silent p.F113F 0.24 TCGA-HU-A4GX-01 4 5798754 5798754 C T EVC Missense_Mutation p.T631M 0.17 deleterious(0.01) possibly_damaging(0.8) TCGA-HU-A4GX-01 4 5798841 5798841 C T EVC Missense_Mutation p.T660M 0.17 tolerated(0.13) benign(0.3) TCGA-HU-A4GX-01 4 6303072 6303072 G A WFS1 Missense_Mutation p.R517H 0.32 deleterious(0.01) possibly_damaging(0.872) TCGA-HU-A4GX-01 4 6325199 6325199 G A PPP2R2C Missense_Mutation p.R392C 0.27 deleterious(0) possibly_damaging(0.888) TCGA-HU-A4GX-01 4 6718567 6718567 T C BLOC1S4 Missense_Mutation p.C211R 0.19 tolerated(0.51) benign(0.005) TCGA-HU-A4GX-01 4 73148871 73148871 T C ADAMTS3 Silent p.S1200S 0.15 TCGA-HU-A4GX-01 4 7398081 7398081 C T SORCS2 Missense_Mutation p.R183W 0.22 deleterious(0) probably_damaging(0.989) TCGA-HU-A4GX-01 4 74279156 74279156 T A ALB Missense_Mutation p.I288N 0.28 deleterious(0) probably_damaging(0.914) TCGA-HU-A4GX-01 4 75695292 75695292 C A BTC Nonsense_Mutation p.G47* 0.33 TCGA-HU-A4GX-01 4 75937773 75937773 A G PARM1 Missense_Mutation p.H61R 0.26 tolerated(0.51) benign(0.124) TCGA-HU-A4GX-01 4 77661497 77661497 G A SHROOM3 Missense_Mutation p.R724Q 0.36 tolerated(0.15) benign(0.056) TCGA-HU-A4GX-01 4 7770639 7770639 C T AFAP1 Missense_Mutation p.V784I 0.21 tolerated(0.74) benign(0.006) TCGA-HU-A4GX-01 4 8037979 8037979 G A ABLIM2 Missense_Mutation p.A315V 0.23 deleterious(0) possibly_damaging(0.753) TCGA-HU-A4GX-01 4 81188116 81188119 CAGA - FGF5 Frame_Shift_Del p.Q48Afs*70 0.26 TCGA-HU-A4GX-01 4 83849453 83849453 C T LIN54 Silent p.L684L 0.28 TCGA-HU-A4GX-01 4 89414248 89414248 C T HERC5 Missense_Mutation p.P740L 0.25 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GX-01 4 96761854 96761854 G A PDHA2 Missense_Mutation p.D185N 0.31 tolerated(0.54) benign(0.001) TCGA-HU-A4GX-01 5 101813379 101813379 C T SLCO6A1 Splice_Site p.X268_splice 0.32 TCGA-HU-A4GX-01 5 1078056 1078056 G A SLC12A7 Silent p.I507I 0.22 TCGA-HU-A4GX-01 5 110819803 110819803 A G CAMK4 Missense_Mutation p.K354R 0.28 tolerated(0.19) benign(0.01) TCGA-HU-A4GX-01 5 11346635 11346635 C T CTNND2 Missense_Mutation p.A493T 0.24 tolerated(0.24) benign(0.003) TCGA-HU-A4GX-01 5 113831789 113831789 C T KCNN2 Silent p.H550H 0.23 TCGA-HU-A4GX-01 5 118469635 118469635 T - DMXL1 Frame_Shift_Del p.F673Lfs*4 0.25 TCGA-HU-A4GX-01 5 118810104 118810106 GAA - HSD17B4 In_Frame_Del p.E103del 0.26 TCGA-HU-A4GX-01 5 126156669 126156669 C T LMNB1 Missense_Mutation p.R410C 0.22 deleterious(0) benign(0.111) TCGA-HU-A4GX-01 5 132094193 132094193 C T SEPT8 Intron 0.14 TCGA-HU-A4GX-01 5 134724774 134724774 G A H2AFY Missense_Mutation p.R4C 0.21 deleterious(0) unknown(0) TCGA-HU-A4GX-01 5 139221925 139221925 C T PSD2 Missense_Mutation p.R728W 0.19 deleterious(0.01) possibly_damaging(0.886) TCGA-HU-A4GX-01 5 139876372 139876372 T G ANKHD1 Missense_Mutation p.L838R 0.32 unknown(0) TCGA-HU-A4GX-01 5 140166120 140166120 G A PCDHA1 Missense_Mutation p.G82D 0.21 deleterious_low_confidence(0) probably_damaging(1) TCGA-HU-A4GX-01 5 140203211 140203211 G A PCDHA5 Silent p.A617A 0.31 TCGA-HU-A4GX-01 5 140214306 140214306 C T PCDHA7 Missense_Mutation p.P113L 0.20 deleterious_low_confidence(0) probably_damaging(0.959) TCGA-HU-A4GX-01 5 140229805 140229805 C T PCDHA9 Silent p.G575G 0.28 TCGA-HU-A4GX-01 5 140237004 140237004 C T PCDHA10 Silent p.S457S 0.26 TCGA-HU-A4GX-01 5 140262153 140262153 G A PCDHA13 Silent p.A100A 0.23 TCGA-HU-A4GX-01 5 140263878 140263878 G A PCDHA13 Silent p.A675A 0.24 TCGA-HU-A4GX-01 5 140431111 140431111 T - PCDHB1 Frame_Shift_Del p.L21Cfs*28 0.21 TCGA-HU-A4GX-01 5 140517042 140517042 G A PCDHB5 Missense_Mutation p.A676T 0.27 deleterious_low_confidence(0.03) benign(0.069) TCGA-HU-A4GX-01 5 140536883 140536883 A G PCDHB17 Missense_Mutation p.Y436C 0.21 deleterious_low_confidence(0.01) benign(0.058) TCGA-HU-A4GX-01 5 140604549 140604549 T C PCDHB14 Missense_Mutation p.L491P 0.22 deleterious_low_confidence(0.02) probably_damaging(0.954) TCGA-HU-A4GX-01 5 140698650 140698650 A G TAF7 Missense_Mutation p.V321A 0.20 tolerated(0.14) benign(0.005) TCGA-HU-A4GX-01 5 140720821 140720821 G A PCDHGA2 Silent p.A761A 0.18 TCGA-HU-A4GX-01 5 140750742 140750742 G A PCDHGB3 Missense_Mutation p.V261I 0.31 tolerated(0.09) benign(0.201) TCGA-HU-A4GX-01 5 140773876 140773876 C T PCDHGA8 Missense_Mutation p.A499V 0.22 tolerated_low_confidence(0.38) benign(0.028) TCGA-HU-A4GX-01 5 140783008 140783008 C T PCDHGA9 Silent p.G163G 0.17 TCGA-HU-A4GX-01 5 140811073 140811073 G A PCDHGA12 Silent p.A249A 0.21 TCGA-HU-A4GX-01 5 140868902 140868902 G A PCDHGC5 Missense_Mutation p.R32H 0.31 tolerated(0.12) benign(0.003) TCGA-HU-A4GX-01 5 141018999 141018999 T C FCHSD1 3'UTR 0.22 TCGA-HU-A4GX-01 5 141051513 141051513 C A ARAP3 Missense_Mutation p.K540N 0.27 deleterious(0) probably_damaging(0.948) TCGA-HU-A4GX-01 5 143853300 143853300 G A KCTD16 Missense_Mutation p.G304S 0.20 tolerated(0.17) probably_damaging(0.999) TCGA-HU-A4GX-01 5 14477004 14477004 T - TRIO Frame_Shift_Del p.L2031* 0.42 TCGA-HU-A4GX-01 5 145649002 145649002 A - RBM27 Frame_Shift_Del p.N851Tfs*4 0.14 TCGA-HU-A4GX-01 5 146997527 146997527 A G JAKMIP2 Missense_Mutation p.Y765H 0.33 tolerated(0.51) possibly_damaging(0.549) TCGA-HU-A4GX-01 5 148563152 148563152 G T ABLIM3 Missense_Mutation p.V51L 0.21 deleterious(0.02) possibly_damaging(0.896) TCGA-HU-A4GX-01 5 149581992 149581992 C T SLC6A7 Missense_Mutation p.T314M 0.31 deleterious(0) possibly_damaging(0.714) TCGA-HU-A4GX-01 5 150422141 150422141 C T TNIP1 Missense_Mutation p.R365H 0.29 deleterious(0) probably_damaging(0.927) TCGA-HU-A4GX-01 5 150660654 150660654 C T SLC36A3 Silent p.P396P 0.28 TCGA-HU-A4GX-01 5 154395428 154395430 AAG - KIF4B In_Frame_Del p.E671del 0.27 TCGA-HU-A4GX-01 5 15936592 15936592 G A FBXL7 Missense_Mutation p.R258Q 0.16 tolerated(0.59) benign(0.004) TCGA-HU-A4GX-01 5 16694613 16694613 C T MYO10 Missense_Mutation p.G1223R 0.25 deleterious(0) probably_damaging(1) TCGA-HU-A4GX-01 5 16701205 16701205 G T MYO10 Missense_Mutation p.A1100D 0.36 tolerated_low_confidence(0.15) benign(0.399) TCGA-HU-A4GX-01 5 169028407 169028410 AGAA - SPDL1 Frame_Shift_Del p.K484Rfs*10 0.27 TCGA-HU-A4GX-01 5 177035954 177035954 G A B4GALT7 Missense_Mutation p.R256H 0.27 tolerated(0.06) benign(0.015) TCGA-HU-A4GX-01 5 177637616 177637616 C T HNRNPAB Missense_Mutation p.P331S 0.23 deleterious(0) unknown(0) TCGA-HU-A4GX-01 5 177638920 177638920 G A PHYKPL 3'UTR 0.17 TCGA-HU-A4GX-01 5 178199576 178199576 C T AACSP1 RNA 0.31 TCGA-HU-A4GX-01 5 178413488 178413488 C T GRM6 Silent p.P589P 0.38 TCGA-HU-A4GX-01 5 34998924 34998924 C T AGXT2 Missense_Mutation p.R482H 0.20 deleterious(0) probably_damaging(0.996) TCGA-HU-A4GX-01 5 35753739 35753739 G A SPEF2 Missense_Mutation p.R1115H 0.29 deleterious(0) probably_damaging(0.996) TCGA-HU-A4GX-01 5 35921187 35921187 C T CAPSL Silent p.A12A 0.23 TCGA-HU-A4GX-01 5 36985083 36985083 A - NIPBL Frame_Shift_Del p.K603Sfs*11 0.26 TCGA-HU-A4GX-01 5 37064121 37064121 C T NIPBL Intron 0.32 TCGA-HU-A4GX-01 5 37196015 37196015 A - C5orf42 Frame_Shift_Del p.F1252Lfs*19 0.20 TCGA-HU-A4GX-01 5 38869209 38869209 C T OSMR Silent p.Y21Y 0.24 TCGA-HU-A4GX-01 5 38923329 38923329 A - OSMR Frame_Shift_Del p.T617Qfs*20 0.23 TCGA-HU-A4GX-01 5 40681484 40681484 A G PTGER4 Missense_Mutation p.Y130C 0.28 deleterious(0.04) probably_damaging(0.962) TCGA-HU-A4GX-01 5 43446519 43446519 G T C5orf28 Silent p.S151S 0.29 TCGA-HU-A4GX-01 5 52204835 52204835 G T ITGA1 Missense_Mutation p.E521D 0.32 tolerated(0.63) benign(0.02) TCGA-HU-A4GX-01 5 53815068 53815068 A G SNX18 Missense_Mutation p.D429G 0.23 deleterious(0) probably_damaging(0.943) TCGA-HU-A4GX-01 5 54579256 54579256 T C DHX29 Silent p.S580S 0.17 TCGA-HU-A4GX-01 5 55212718 55212718 C A IL31RA Missense_Mutation p.L689I 0.21 tolerated(0.4) benign(0.263) TCGA-HU-A4GX-01 5 73169027 73169027 A C ARHGEF28 Silent p.R924R 0.29 TCGA-HU-A4GX-01 5 74011418 74011418 A T HEXB Missense_Mutation p.T329S 0.17 deleterious(0.04) benign(0.399) TCGA-HU-A4GX-01 5 77523225 77523225 A G AP3B1 Silent p.N169N 0.31 TCGA-HU-A4GX-01 5 7867527 7867527 T - FASTKD3 Frame_Shift_Del p.S224Vfs*2 0.13 TCGA-HU-A4GX-01 5 78936937 78936937 T - PAPD4 Frame_Shift_Del p.L199Wfs*6 0.21 TCGA-HU-A4GX-01 5 79030062 79030062 A - CMYA5 Frame_Shift_Del p.A1827Hfs*13 0.21 TCGA-HU-A4GX-01 5 79368182 79368182 C T THBS4 Missense_Mutation p.A601V 0.25 tolerated(0.2) benign(0.087) TCGA-HU-A4GX-01 5 86668008 86668008 G A RASA1 Missense_Mutation p.R591H 0.22 deleterious(0.02) probably_damaging(0.976) TCGA-HU-A4GX-01 6 110714129 110714129 G A DDO Missense_Mutation p.A320V 0.26 tolerated(0.71) benign(0.002) TCGA-HU-A4GX-01 6 11192590 11192590 C T NEDD9 Silent p.P217P 0.25 TCGA-HU-A4GX-01 6 112441524 112441524 T C LAMA4 Missense_Mutation p.R1543G 0.28 deleterious(0.01) possibly_damaging(0.854) TCGA-HU-A4GX-01 6 121768438 121768438 G - GJA1 Frame_Shift_Del p.L151Cfs*21 0.14 TCGA-HU-A4GX-01 6 125269199 125269199 G C RP11-510H23.1 RNA 0.20 TCGA-HU-A4GX-01 6 125283970 125283970 G A RP11-510H23.1 Intron 0.21 TCGA-HU-A4GX-01 6 125284152 125284152 C T RP11-510H23.1 RNA 0.24 TCGA-HU-A4GX-01 6 125397902 125397902 T - RNF217 Frame_Shift_Del p.F170Lfs*24 0.23 TCGA-HU-A4GX-01 6 125541259 125541259 G A TPD52L1 Missense_Mutation p.E19K 0.21 deleterious(0) possibly_damaging(0.779) TCGA-HU-A4GX-01 6 127794447 127794447 A - SOGA3 Frame_Shift_Del p.F941Lfs*17 0.13 TCGA-HU-A4GX-01 6 127796643 127796643 G A SOGA3 Missense_Mutation p.A843V 0.24 deleterious(0.02) benign(0.18) TCGA-HU-A4GX-01 6 132619024 132619024 A G MOXD1 Missense_Mutation p.F527L 0.17 deleterious(0.03) possibly_damaging(0.577) TCGA-HU-A4GX-01 6 134491976 134491976 A - SGK1 Frame_Shift_Del p.F467Lfs*5 0.15 TCGA-HU-A4GX-01 6 135239813 135239813 A G ALDH8A1 Missense_Mutation p.F402L 0.25 deleterious(0) probably_damaging(1) TCGA-HU-A4GX-01 6 135639703 135639703 C A AHI1 Missense_Mutation p.S1127I 0.21 tolerated(0.12) benign(0.249) TCGA-HU-A4GX-01 6 136502384 136502384 A G PDE7B Missense_Mutation p.D323G 0.22 deleterious(0) probably_damaging(1) TCGA-HU-A4GX-01 6 144508016 144508016 C T STX11 Silent p.R84R 0.12 TCGA-HU-A4GX-01 6 144801014 144801014 G A UTRN Missense_Mutation p.A1135T 0.27 tolerated(0.08) possibly_damaging(0.582) TCGA-HU-A4GX-01 6 149901801 149901801 T - GINM1 Frame_Shift_Del p.L221Yfs*20 0.22 TCGA-HU-A4GX-01 6 151671353 151671353 C A AKAP12 Silent p.P609P 0.24 TCGA-HU-A4GX-01 6 151674283 151674283 A G AKAP12 Missense_Mutation p.D1586G 0.31 deleterious(0.01) benign(0.42) TCGA-HU-A4GX-01 6 151687735 151687735 C T ZBTB2 Missense_Mutation p.G156R 0.27 tolerated(0.26) benign(0.088) TCGA-HU-A4GX-01 6 155154243 155154243 G A SCAF8 Missense_Mutation p.R1177H 0.16 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-HU-A4GX-01 6 155718034 155718034 C T NOX3 Missense_Mutation p.C548Y 0.27 deleterious(0) probably_damaging(1) TCGA-HU-A4GX-01 6 157522085 157522085 C T ARID1B Nonsense_Mutation p.Q1453* 0.22 TCGA-HU-A4GX-01 6 158454638 158454638 C T SYNJ2 Missense_Mutation p.R213C 0.35 deleterious(0.03) possibly_damaging(0.55) TCGA-HU-A4GX-01 6 159206452 159206452 G - EZR Frame_Shift_Del p.P119Lfs*34 0.17 TCGA-HU-A4GX-01 6 160227061 160227061 C T PNLDC1 Missense_Mutation p.R159W 0.34 deleterious(0.02) possibly_damaging(0.901) TCGA-HU-A4GX-01 6 16295240 16295240 C A GMPR Silent p.A287A 0.31 TCGA-HU-A4GX-01 6 165713956 165713956 G A C6orf118 Missense_Mutation p.T258M 0.27 tolerated(0.1) benign(0.157) TCGA-HU-A4GX-01 6 165895803 165895803 C T PDE10A Silent p.R75R 0.14 TCGA-HU-A4GX-01 6 169637303 169637303 C T THBS2 Missense_Mutation p.G480D 0.28 tolerated(0.11) possibly_damaging(0.58) TCGA-HU-A4GX-01 6 18237647 18237647 C G DEK Missense_Mutation p.S288T 0.24 deleterious(0.03) possibly_damaging(0.827) TCGA-HU-A4GX-01 6 24848384 24848384 T C FAM65B Splice_Site p.X316_splice 0.23 TCGA-HU-A4GX-01 6 26240759 26240759 C T HIST1H4F Missense_Mutation p.R36C 0.26 tolerated(0.05) possibly_damaging(0.82) TCGA-HU-A4GX-01 6 27107164 27107164 A G HIST1H4I Missense_Mutation p.N26S 0.22 tolerated(0.07) benign(0.172) TCGA-HU-A4GX-01 6 28268660 28268660 A - PGBD1 Frame_Shift_Del p.D346Tfs*5 0.22 TCGA-HU-A4GX-01 6 28502011 28502011 A - GPX5 3'UTR 0.45 TCGA-HU-A4GX-01 6 29141560 29141560 T A OR2J2 Missense_Mutation p.S50T 0.26 deleterious(0.02) benign(0.073) TCGA-HU-A4GX-01 6 29692921 29692921 G T HLA-F Missense_Mutation p.G242W 0.26 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-HU-A4GX-01 6 31170318 31170318 G T HCG27 Missense_Mutation p.R98S 0.17 deleterious_low_confidence(0) unknown(0) TCGA-HU-A4GX-01 6 31540518 31540518 C A LTA 5'UTR 0.22 TCGA-HU-A4GX-01 6 31594894 31594894 G A PRRC2A Silent p.P403P 0.20 TCGA-HU-A4GX-01 6 31740843 31740843 G A VWA7 Silent p.S325S 0.37 TCGA-HU-A4GX-01 6 32008306 32008306 C T CYP21A2 Missense_Mutation p.R355C 0.13 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GX-01 6 32011636 32011636 G C TNXB Missense_Mutation p.A236G 0.22 tolerated(0.07) possibly_damaging(0.856) TCGA-HU-A4GX-01 6 32052427 32052427 C T TNXB Missense_Mutation p.V1070M 0.23 probably_damaging(0.997) TCGA-HU-A4GX-01 6 32123549 32123549 G A PPT2 Missense_Mutation p.G147E 0.19 deleterious(0) probably_damaging(0.988) TCGA-HU-A4GX-01 6 3224870 3224870 G A TUBB2B 3'UTR 0.17 TCGA-HU-A4GX-01 6 3225887 3225887 C T TUBB2B Missense_Mutation p.G146R 0.15 deleterious_low_confidence(0.02) probably_damaging(0.992) TCGA-HU-A4GX-01 6 32782191 32782191 A G HLA-DOB Silent p.T183T 0.23 TCGA-HU-A4GX-01 6 32945631 32945631 C T BRD2 Missense_Mutation p.S476L 0.17 tolerated(0.23) possibly_damaging(0.651) TCGA-HU-A4GX-01 6 33135270 33135270 G A COL11A2 Missense_Mutation p.P1266L 0.33 unknown(0) TCGA-HU-A4GX-01 6 33179100 33179100 C T RING1 Silent p.G207G 0.39 TCGA-HU-A4GX-01 6 33288840 33288840 G A DAXX Nonsense_Mutation p.R238* 0.28 TCGA-HU-A4GX-01 6 33655066 33655066 C T ITPR3 Missense_Mutation p.R2047C 0.21 deleterious(0) possibly_damaging(0.696) TCGA-HU-A4GX-01 6 35205699 35205699 G - SCUBE3 Frame_Shift_Del p.G246Afs*33 0.19 TCGA-HU-A4GX-01 6 35466102 35466102 G A TULP1 3'UTR 0.40 TCGA-HU-A4GX-01 6 36454701 36454701 G T KCTD20 Missense_Mutation p.G337C 0.25 deleterious(0) probably_damaging(1) TCGA-HU-A4GX-01 6 41037795 41037820 AGGAATTGGCCCCATCTTACCAAGTA GGAATTGGCCCCATCTTACCAAGTAAT OARD1 Splice_Site p.X80_splice 0.13 TCGA-HU-A4GX-01 6 41037820 41037821 - AT OARD1 Frame_Shift_Ins p.Y80Ifs*3 0.13 TCGA-HU-A4GX-01 6 41243756 41243756 A G TREM1 3'UTR 0.27 TCGA-HU-A4GX-01 6 41754676 41754676 G T PRICKLE4 Missense_Mutation p.G322W 0.30 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-HU-A4GX-01 6 43008318 43008318 G A CUL7 Nonsense_Mutation p.Q1409* 0.21 TCGA-HU-A4GX-01 6 43418437 43418437 G T DLK2 Missense_Mutation p.A331D 0.18 tolerated(0.26) benign(0.272) TCGA-HU-A4GX-01 6 44275091 44275091 G A AARS2 Missense_Mutation p.A312V 0.32 tolerated(0.06) benign(0.446) TCGA-HU-A4GX-01 6 4892607 4892607 G A CDYL Missense_Mutation p.G229R 0.26 tolerated(0.21) benign(0.018) TCGA-HU-A4GX-01 6 4995424 4995424 T - RPP40 Frame_Shift_Del p.N327Mfs*16 0.18 TCGA-HU-A4GX-01 6 51491808 51491808 A G PKHD1 Silent p.T3924T 0.17 TCGA-HU-A4GX-01 6 52871165 52871165 G A ICK Silent p.I564I 0.32 TCGA-HU-A4GX-01 6 56483994 56483994 G A DST Intron 0.21 TCGA-HU-A4GX-01 6 69666664 69666664 C T BAI3 Silent p.G496G 0.19 TCGA-HU-A4GX-01 6 72003316 72003316 T C OGFRL1 Splice_Site p.X134_splice 0.21 TCGA-HU-A4GX-01 6 7231151 7231151 C T RREB1 Missense_Mutation p.P940L 0.19 deleterious(0) possibly_damaging(0.477) TCGA-HU-A4GX-01 6 7231823 7231823 G A RREB1 Missense_Mutation p.R1164H 0.28 tolerated(0.08) benign(0.027) TCGA-HU-A4GX-01 6 7246910 7246910 C T RREB1 Silent p.D1409D 0.43 TCGA-HU-A4GX-01 6 73951401 73951401 G T KHDC1 Missense_Mutation p.L189M 0.28 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-HU-A4GX-01 6 7585548 7585548 G A DSP Missense_Mutation p.A2685T 0.26 probably_damaging(0.999) TCGA-HU-A4GX-01 6 84233911 84233911 T C PRSS35 Missense_Mutation p.W251R 0.18 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GX-01 6 84573933 84573933 C T CYB5R4 Nonsense_Mutation p.R39* 0.19 TCGA-HU-A4GX-01 6 84862351 84862351 T - KIAA1009 Frame_Shift_Del p.N1181Mfs*3 0.33 TCGA-HU-A4GX-01 6 87966812 87966812 T - ZNF292 Frame_Shift_Del p.L1157Cfs*5 0.20 TCGA-HU-A4GX-01 6 87967491 87967491 A G ZNF292 Missense_Mutation p.R1382G 0.29 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GX-01 6 88144752 88144752 C T C6ORF165 Missense_Mutation p.T492I 0.23 tolerated(0.35) benign(0.114) TCGA-HU-A4GX-01 6 90364002 90364002 T C MDN1 Missense_Mutation p.Q5181R 0.22 unknown(0) TCGA-HU-A4GX-01 6 90660903 90660903 C T BACH2 Missense_Mutation p.E308K 0.19 deleterious(0.03) benign(0.154) TCGA-HU-A4GX-01 7 100320333 100320333 C T EPO Missense_Mutation p.S98L 0.16 deleterious(0) benign(0.407) TCGA-HU-A4GX-01 7 100459533 100459533 G A SLC12A9 Missense_Mutation p.D571N 0.15 tolerated(0.32) benign(0.016) TCGA-HU-A4GX-01 7 100855926 100855927 - G PLOD3 Frame_Shift_Ins p.R297Pfs*44 0.21 TCGA-HU-A4GX-01 7 100859470 100859470 G A PLOD3 Missense_Mutation p.T159M 0.21 tolerated(0.09) benign(0.018) TCGA-HU-A4GX-01 7 101916762 101916762 G A CUX1 Missense_Mutation p.E459K 0.16 tolerated(0.13) probably_damaging(0.948) TCGA-HU-A4GX-01 7 102098353 102098353 G - ALKBH4 Frame_Shift_Del p.R133Gfs*86 0.14 TCGA-HU-A4GX-01 7 103017303 103017303 T A SLC26A5 Nonsense_Mutation p.K665* 0.22 TCGA-HU-A4GX-01 7 103061308 103061308 T - SLC26A5 Frame_Shift_Del p.I57* 0.11 TCGA-HU-A4GX-01 7 104703837 104703837 G A KMT2E Missense_Mutation p.A76T 0.36 deleterious(0.01) possibly_damaging(0.483) TCGA-HU-A4GX-01 7 106508513 106508513 C T PIK3CG Silent p.H169H 0.40 TCGA-HU-A4GX-01 7 107398609 107398609 A G CBLL1 Silent p.R154R 0.20 TCGA-HU-A4GX-01 7 107878215 107878215 T - NRCAM Splice_Site p.X36_splice 0.24 TCGA-HU-A4GX-01 7 110763694 110763694 T A LRRN3 Nonsense_Mutation p.L289* 0.18 TCGA-HU-A4GX-01 7 119915484 119915484 C T KCND2 Silent p.D266D 0.27 TCGA-HU-A4GX-01 7 120740134 120740134 C T CPED1 Missense_Mutation p.R302C 0.26 tolerated(0.2) possibly_damaging(0.814) TCGA-HU-A4GX-01 7 122261562 122261562 G A CADPS2 Silent p.S359S 0.16 TCGA-HU-A4GX-01 7 122635358 122635358 T C TAS2R16 Missense_Mutation p.T111A 0.47 tolerated(0.07) benign(0.318) TCGA-HU-A4GX-01 7 126173399 126173401 CTG TT GRM8 Frame_Shift_Del p.Q679Kfs*19 0.22 TCGA-HU-A4GX-01 7 127222666 127222666 C T GCC1 Missense_Mutation p.R577H 0.25 tolerated(0.07) possibly_damaging(0.882) TCGA-HU-A4GX-01 7 127326797 127326798 - A SND1 Frame_Shift_Ins p.D72Gfs*4 0.15 TCGA-HU-A4GX-01 7 127447605 127447606 - A SND1 Frame_Shift_Ins p.L410Afs*14 0.20 TCGA-HU-A4GX-01 7 129019540 129019540 G A AHCYL2 Missense_Mutation p.R142H 0.20 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-HU-A4GX-01 7 129125495 129125495 G A STRIP2 Missense_Mutation p.R777H 0.23 deleterious(0) probably_damaging(1) TCGA-HU-A4GX-01 7 134878091 134878091 C T WDR91 Silent p.P517P 0.23 TCGA-HU-A4GX-01 7 137148242 137148242 C T DGKI Missense_Mutation p.V918M 0.20 tolerated(0.31) benign(0.003) TCGA-HU-A4GX-01 7 138333800 138333800 C T SVOPL Missense_Mutation p.R206H 0.41 tolerated(0.07) probably_damaging(0.954) TCGA-HU-A4GX-01 7 142448495 142448495 G A TRBV29-1 Missense_Mutation p.R30H 0.23 tolerated(0.15) benign(0.025) TCGA-HU-A4GX-01 7 142636664 142636664 A T C7orf34 Silent p.G7G 0.32 TCGA-HU-A4GX-01 7 143080027 143080027 T C ZYX Missense_Mutation p.V212A 0.16 tolerated(1) benign(0.001) TCGA-HU-A4GX-01 7 144075916 144075916 G A ARHGEF5 Silent p.L1531L 0.18 TCGA-HU-A4GX-01 7 144364909 144364909 G - TPK1 Intron 0.18 TCGA-HU-A4GX-01 7 148456448 148456448 T C CUL1 Splice_Site p.X178_splice 0.19 TCGA-HU-A4GX-01 7 148921642 148921642 G A ZNF282 Missense_Mutation p.R640H 0.27 tolerated(0.06) possibly_damaging(0.871) TCGA-HU-A4GX-01 7 149426385 149426385 G A KRBA1 Missense_Mutation p.V578I 0.19 tolerated(0.53) benign(0.002) TCGA-HU-A4GX-01 7 150648901 150648901 G A KCNH2 Missense_Mutation p.A527V 0.20 deleterious(0) probably_damaging(1) TCGA-HU-A4GX-01 7 150767852 150767852 G A SLC4A2 Missense_Mutation p.V535M 0.20 deleterious(0.01) probably_damaging(1) TCGA-HU-A4GX-01 7 151860907 151860907 C T KMT2C Missense_Mutation p.R3252H 0.32 probably_damaging(0.999) TCGA-HU-A4GX-01 7 1525028 1525028 C A INTS1 Silent p.G1018G 0.17 TCGA-HU-A4GX-01 7 152551657 152551657 G A ACTR3B 3'UTR 0.09 TCGA-HU-A4GX-01 7 155596158 155596158 C T SHH Silent p.A275A 0.56 TCGA-HU-A4GX-01 7 157959759 157959759 G A PTPRN2 Silent p.P258P 0.15 TCGA-HU-A4GX-01 7 157985120 157985120 C T PTPRN2 Missense_Mutation p.A150T 0.17 tolerated(0.7) benign(0.01) TCGA-HU-A4GX-01 7 20782576 20782576 G A ABCB5 Missense_Mutation p.R1034H 0.15 tolerated(0.05) benign(0.005) TCGA-HU-A4GX-01 7 21654837 21654837 C T DNAH11 Missense_Mutation p.R1320C 0.19 probably_damaging(0.944) TCGA-HU-A4GX-01 7 23191791 23191791 G C KLHL7 Missense_Mutation p.G300A 0.31 deleterious(0.02) probably_damaging(0.997) TCGA-HU-A4GX-01 7 24856292 24856292 T - OSBPL3 Frame_Shift_Del p.N655Tfs*18 0.16 TCGA-HU-A4GX-01 7 2622222 2622222 C T IQCE Silent p.N213N 0.10 TCGA-HU-A4GX-01 7 2689576 2689576 C T TTYH3 Silent p.D275D 0.18 TCGA-HU-A4GX-01 7 27147982 27147982 G - HOXA3 Frame_Shift_Del p.P295Rfs*81 0.24 TCGA-HU-A4GX-01 7 29135831 29135831 T C CPVL Missense_Mutation p.I97M 0.28 tolerated(0.19) benign(0.111) TCGA-HU-A4GX-01 7 29606289 29606289 C T PRR15 Missense_Mutation p.P115L 0.21 tolerated(0.15) benign(0.023) TCGA-HU-A4GX-01 7 31104454 31104454 C G ADCYAP1R1 Missense_Mutation p.A20G 0.26 tolerated(0.32) benign(0.16) TCGA-HU-A4GX-01 7 37311468 37311468 T - ELMO1 Frame_Shift_Del p.N71Mfs*7 0.26 TCGA-HU-A4GX-01 7 39247127 39247127 C T POU6F2 Missense_Mutation p.T140I 0.20 deleterious(0) probably_damaging(0.986) TCGA-HU-A4GX-01 7 4152977 4152977 G T SDK1 Missense_Mutation p.R1164L 0.24 deleterious(0) possibly_damaging(0.677) TCGA-HU-A4GX-01 7 41730049 41730049 T - INHBA Frame_Shift_Del p.V161Sfs*37 0.13 TCGA-HU-A4GX-01 7 42005564 42005564 G A GLI3 Missense_Mutation p.A1036V 0.23 tolerated(0.07) benign(0.082) TCGA-HU-A4GX-01 7 4304977 4304977 C T SDK1 Silent p.G2201G 0.25 TCGA-HU-A4GX-01 7 43591890 43591891 - A HECW1 Frame_Shift_Ins p.I1490Nfs*5 0.20 TCGA-HU-A4GX-01 7 44185159 44185159 C T GCK Missense_Mutation p.R398H 0.32 deleterious(0.03) probably_damaging(0.997) TCGA-HU-A4GX-01 7 44806211 44806211 G - ZMIZ2 Frame_Shift_Del p.S872Afs*19 0.18 TCGA-HU-A4GX-01 7 47474972 47474972 C T TNS3 Missense_Mutation p.A78T 0.17 tolerated(0.24) probably_damaging(0.929) TCGA-HU-A4GX-01 7 47694946 47694946 G A C7orf65 Missense_Mutation p.G24S 0.19 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-HU-A4GX-01 7 48550772 48550772 G A ABCA13 Silent p.T4539T 0.15 TCGA-HU-A4GX-01 7 50595863 50595864 TC - DDC Frame_Shift_Del p.D229Qfs*23 0.22 TCGA-HU-A4GX-01 7 5340255 5340255 C T SLC29A4 Missense_Mutation p.A471V 0.17 deleterious(0) probably_damaging(1) TCGA-HU-A4GX-01 7 5340275 5340275 A G SLC29A4 Missense_Mutation p.K478E 0.16 tolerated(1) benign(0.002) TCGA-HU-A4GX-01 7 55902182 55902182 C T SEPT14 Missense_Mutation p.G219D 0.26 tolerated(0.07) benign(0.2) TCGA-HU-A4GX-01 7 56022971 56022971 C A MRPS17 3'UTR 0.29 TCGA-HU-A4GX-01 7 56051523 56051523 G A GBAS Missense_Mutation p.G183R 0.13 deleterious(0) possibly_damaging(0.594) TCGA-HU-A4GX-01 7 6210190 6210190 G A CYTH3 Missense_Mutation p.R267C 0.23 deleterious(0) possibly_damaging(0.766) TCGA-HU-A4GX-01 7 63726916 63726916 G A ZNF679 Missense_Mutation p.G302D 0.21 deleterious(0.03) probably_damaging(1) TCGA-HU-A4GX-01 7 64530112 64530112 G T SNORA22 3'Flank 0.17 TCGA-HU-A4GX-01 7 65617408 65617408 T C CRCP 3'UTR 0.13 TCGA-HU-A4GX-01 7 72657377 72657377 A G GTF2IRD2P1 RNA 0.17 TCGA-HU-A4GX-01 7 73753106 73753106 G A CLIP2 Silent p.T150T 0.23 TCGA-HU-A4GX-01 7 74005183 74005183 C T GTF2IRD1 Silent p.L842L 0.21 TCGA-HU-A4GX-01 7 75070840 75070840 C - POM121C 5'UTR 0.10 TCGA-HU-A4GX-01 7 75167326 75167326 C T HIP1 3'UTR 0.24 TCGA-HU-A4GX-01 7 76139983 76139983 G - UPK3B Frame_Shift_Del p.Q7Sfs*4 0.23 TCGA-HU-A4GX-01 7 77885514 77885514 G A MAGI2 Missense_Mutation p.A598V 0.09 deleterious(0.02) benign(0.344) TCGA-HU-A4GX-01 7 81335709 81335709 G A HGF Missense_Mutation p.H551Y 0.15 tolerated(1) probably_damaging(0.965) TCGA-HU-A4GX-01 7 82474764 82474764 C T PCLO Silent p.Q4623Q 0.18 TCGA-HU-A4GX-01 7 82580152 82580152 A G PCLO Missense_Mutation p.I3251T 0.18 unknown(0) TCGA-HU-A4GX-01 7 87037363 87037363 G A ABCB4 Missense_Mutation p.A1090V 0.18 tolerated(0.08) benign(0.014) TCGA-HU-A4GX-01 7 87133529 87133529 A C ABCB1 3'UTR 0.15 TCGA-HU-A4GX-01 7 96324111 96324111 G A SHFM1 Nonsense_Mutation p.R57* 0.35 TCGA-HU-A4GX-01 7 99103788 99103788 T C ZKSCAN5 Missense_Mutation p.Y41H 0.17 tolerated(0.41) possibly_damaging(0.723) TCGA-HU-A4GX-01 7 99700406 99700406 T C AP4M1 Splice_Site p.X85_splice 0.15 TCGA-HU-A4GX-01 7 99752585 99752585 G - C7orf43 3'UTR 0.21 TCGA-HU-A4GX-01 8 100115327 100115327 C T VPS13B Missense_Mutation p.R187C 0.21 deleterious(0) possibly_damaging(0.876) TCGA-HU-A4GX-01 8 102701518 102701518 C T NCALD 3'UTR 0.24 TCGA-HU-A4GX-01 8 103289349 103289349 T - UBR5 Frame_Shift_Del p.E2121Kfs*28 0.29 TCGA-HU-A4GX-01 8 103663533 103663534 GA - KLF10 Frame_Shift_Del p.P343Hfs*19 0.24 TCGA-HU-A4GX-01 8 104388118 104388118 C A CTHRC1 Silent p.S101S 0.19 TCGA-HU-A4GX-01 8 10480382 10480382 G - RP1L1 Frame_Shift_Del p.K111Rfs*46 0.22 TCGA-HU-A4GX-01 8 124027678 124027678 G A DERL1 3'UTR 0.21 TCGA-HU-A4GX-01 8 124266643 124266643 G A ZHX1 Missense_Mutation p.T515I 0.29 deleterious(0.05) probably_damaging(0.996) TCGA-HU-A4GX-01 8 124989713 124989713 C A FER1L6 Silent p.I309I 0.20 TCGA-HU-A4GX-01 8 131070256 131070256 T C ASAP1 Missense_Mutation p.T1087A 0.26 deleterious(0.02) benign(0.02) TCGA-HU-A4GX-01 8 131833656 131833656 C A ADCY8 Missense_Mutation p.G896W 0.14 tolerated(0.12) probably_damaging(0.994) TCGA-HU-A4GX-01 8 133627291 133627291 C T LRRC6 Missense_Mutation p.V323I 0.13 tolerated(0.21) benign(0.085) TCGA-HU-A4GX-01 8 134203444 134203444 C T WISP1 Silent p.T19T 0.32 TCGA-HU-A4GX-01 8 136594256 136594256 C - KHDRBS3 Frame_Shift_Del p.P251Qfs*101 0.17 TCGA-HU-A4GX-01 8 144887379 144887379 C T SCRIB Missense_Mutation p.R858H 0.25 benign(0.019) TCGA-HU-A4GX-01 8 144946807 144946807 C T EPPK1 Silent p.T205T 0.23 TCGA-HU-A4GX-01 8 145065457 145065457 G - GRINA Frame_Shift_Del p.Q26Sfs*142 0.19 TCGA-HU-A4GX-01 8 145152192 145152192 T C CYC1 Missense_Mutation p.W311R 0.19 deleterious(0) probably_damaging(1) TCGA-HU-A4GX-01 8 145626108 145626108 G A CPSF1 Missense_Mutation p.P215S 0.42 deleterious(0) probably_damaging(1) TCGA-HU-A4GX-01 8 145725579 145725579 C T PPP1R16A Missense_Mutation p.R193C 0.16 deleterious(0.01) benign(0.009) TCGA-HU-A4GX-01 8 146032997 146032997 G A ZNF517 Silent p.P232P 0.16 TCGA-HU-A4GX-01 8 146033389 146033389 C T ZNF517 Missense_Mutation p.A363V 0.29 deleterious(0.04) possibly_damaging(0.499) TCGA-HU-A4GX-01 8 146067178 146067178 A - ZNF7 Frame_Shift_Del p.K231Sfs*59 0.23 TCGA-HU-A4GX-01 8 15508312 15508312 G A TUSC3 Missense_Mutation p.V139I 0.28 tolerated(0.32) benign(0.08) TCGA-HU-A4GX-01 8 22428603 22428603 C T SORBS3 Missense_Mutation p.R538C 0.26 deleterious(0.02) benign(0.033) TCGA-HU-A4GX-01 8 23117743 23117743 C A CHMP7 Missense_Mutation p.R403S 0.23 tolerated(0.82) benign(0) TCGA-HU-A4GX-01 8 25292919 25292919 G A KCTD9 Missense_Mutation p.A258V 0.24 deleterious(0) benign(0.13) TCGA-HU-A4GX-01 8 27491680 27491680 T C SCARA3 5'Flank 0.13 TCGA-HU-A4GX-01 8 29194651 29194651 G T DUSP4 Silent p.T359T 0.29 TCGA-HU-A4GX-01 8 39022310 39022310 A T ADAM32 Missense_Mutation p.I208L 0.30 tolerated(0.15) benign(0.014) TCGA-HU-A4GX-01 8 42019858 42019858 C T AP3M2 Missense_Mutation p.R169W 0.21 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GX-01 8 42033526 42033526 G A PLAT Silent p.D558D 0.27 TCGA-HU-A4GX-01 8 43047527 43047527 G A HGSNAT Missense_Mutation p.R444H 0.17 tolerated(0.19) benign(0.046) TCGA-HU-A4GX-01 8 48777212 48777212 T C PRKDC Missense_Mutation p.T1825A 0.25 possibly_damaging(0.854) TCGA-HU-A4GX-01 8 48883978 48883979 - A MCM4 Frame_Shift_Ins p.T629Nfs*4 0.19 TCGA-HU-A4GX-01 8 52323922 52323922 C T PXDNL Silent p.P650P 0.21 TCGA-HU-A4GX-01 8 53055565 53055565 T - ST18 Frame_Shift_Del p.K698Sfs*24 0.15 TCGA-HU-A4GX-01 8 55541567 55541567 G A RP1 Missense_Mutation p.V1709M 0.18 tolerated(0.23) benign(0.071) TCGA-HU-A4GX-01 8 59520362 59520362 C T NSMAF Missense_Mutation p.R273H 0.18 deleterious(0.01) benign(0.111) TCGA-HU-A4GX-01 8 65493746 65493746 G A BHLHE22 Silent p.A133A 0.20 TCGA-HU-A4GX-01 8 66517737 66517737 T - ARMC1 Frame_Shift_Del p.I168Lfs*24 0.11 TCGA-HU-A4GX-01 8 6728283 6728283 G A DEFB1 Nonsense_Mutation p.Q43* 0.36 TCGA-HU-A4GX-01 8 67425779 67425779 C T C8orf46 Missense_Mutation p.P116L 0.19 deleterious(0) benign(0.382) TCGA-HU-A4GX-01 8 70541813 70541815 AGG - SULF1 In_Frame_Del p.E729del 0.13 TCGA-HU-A4GX-01 8 70744100 70744100 G A SLCO5A1 Missense_Mutation p.A270V 0.24 deleterious(0) probably_damaging(0.986) TCGA-HU-A4GX-01 8 70980488 70980488 C T PRDM14 Missense_Mutation p.G297R 0.27 tolerated(0.3) benign(0.321) TCGA-HU-A4GX-01 8 72756349 72756349 G A MSC Missense_Mutation p.P22L 0.45 deleterious_low_confidence(0.01) benign(0.048) TCGA-HU-A4GX-01 8 73480092 73480092 G - KCNB2 Frame_Shift_Del p.G43Afs*40 0.23 TCGA-HU-A4GX-01 8 77767090 77767090 A - ZFHX4 Frame_Shift_Del p.R2647Gfs*44 0.22 TCGA-HU-A4GX-01 8 82592961 82592961 C A IMPA1 Missense_Mutation p.D100Y 0.29 deleterious(0) probably_damaging(0.996) TCGA-HU-A4GX-01 8 86386635 86386635 T - CA2 Frame_Shift_Del p.L147* 0.23 TCGA-HU-A4GX-01 8 90937617 90937618 - T OSGIN2 Frame_Shift_Ins p.A505Cfs*37 0.21 TCGA-HU-A4GX-01 8 90949256 90949256 A - NBN Frame_Shift_Del p.F744Lfs*7 0.15 TCGA-HU-A4GX-01 8 91031385 91031385 T C DECR1 Silent p.V134V 0.22 TCGA-HU-A4GX-01 8 92401630 92401631 - T SLC26A7 Frame_Shift_Ins p.D583* 0.20 TCGA-HU-A4GX-01 8 95523814 95523814 G T KIAA1429 Missense_Mutation p.L997I 0.24 tolerated(0.49) possibly_damaging(0.647) TCGA-HU-A4GX-01 8 96047721 96047721 C T NDUFAF6 Nonsense_Mutation p.R113* 0.30 TCGA-HU-A4GX-01 8 9609124 9609124 C T TNKS Silent p.D946D 0.28 TCGA-HU-A4GX-01 8 97157057 97157057 A C GDF6 Missense_Mutation p.W368G 0.17 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GX-01 8 97321797 97321797 T C PTDSS1 Silent p.A340A 0.29 TCGA-HU-A4GX-01 8 99961493 99961493 G A OSR2 Missense_Mutation p.V105I 0.26 tolerated(0.42) benign(0.009) TCGA-HU-A4GX-01 9 101340317 101340317 G A GABBR2 Missense_Mutation p.A120V 0.30 tolerated(0.1) possibly_damaging(0.858) TCGA-HU-A4GX-01 9 101990236 101990236 G - SEC61B Frame_Shift_Del p.M55Cfs*22 0.15 TCGA-HU-A4GX-01 9 102590786 102590786 G A NR4A3 Silent p.A165A 0.26 TCGA-HU-A4GX-01 9 104189783 104189783 T C ALDOB Missense_Mutation p.Y174C 0.14 deleterious(0) probably_damaging(1) TCGA-HU-A4GX-01 9 109689819 109689819 T C ZNF462 Missense_Mutation p.L1209P 0.25 probably_damaging(0.998) TCGA-HU-A4GX-01 9 109736549 109736549 A G ZNF462 Missense_Mutation p.H2276R 0.21 probably_damaging(0.989) TCGA-HU-A4GX-01 9 113510017 113510017 G T MUSK Missense_Mutation p.A284S 0.23 deleterious(0.01) probably_damaging(0.984) TCGA-HU-A4GX-01 9 114151873 114151873 G A KIAA0368 Missense_Mutation p.T1315I 0.30 tolerated(0.09) benign(0.237) TCGA-HU-A4GX-01 9 116136420 116136420 C T HDHD3 Missense_Mutation p.R72H 0.39 tolerated(0.07) benign(0.035) TCGA-HU-A4GX-01 9 116246504 116246506 CTT - RGS3 In_Frame_Del p.F207del 0.22 TCGA-HU-A4GX-01 9 117840373 117840373 G A TNC Silent p.D841D 0.26 TCGA-HU-A4GX-01 9 121929407 121929407 C T BRINP1 Silent p.T747T 0.22 TCGA-HU-A4GX-01 9 124110298 124110298 C T AL161784.1 Missense_Mutation p.A23V 0.19 benign(0.01) TCGA-HU-A4GX-01 9 125585301 125585301 A C PDCL Missense_Mutation p.S116R 0.25 tolerated(0.23) benign(0.02) TCGA-HU-A4GX-01 9 127781189 127781189 A G SCAI Silent p.V273V 0.30 TCGA-HU-A4GX-01 9 129642876 129642876 G A ZBTB34 Missense_Mutation p.G396R 0.20 deleterious(0) probably_damaging(1) TCGA-HU-A4GX-01 9 130913968 130913968 C T LCN2 Silent p.P109P 0.19 TCGA-HU-A4GX-01 9 130943046 130943047 - G CIZ1 Frame_Shift_Ins p.E213Rfs*4 0.14 TCGA-HU-A4GX-01 9 131105530 131105530 G A SLC27A4 Missense_Mutation p.R40H 0.22 deleterious(0.01) benign(0.411) TCGA-HU-A4GX-01 9 13110660 13110660 T - MPDZ Frame_Shift_Del p.N1906Mfs*16 0.24 TCGA-HU-A4GX-01 9 131718643 131718643 A - RP11-101E3.5 Frame_Shift_Del p.V82* 0.19 TCGA-HU-A4GX-01 9 131864692 131864692 A G CRAT Missense_Mutation p.V206A 0.21 tolerated(0.31) benign(0.33) TCGA-HU-A4GX-01 9 133738296 133738296 C T ABL1 Silent p.Y251Y 0.25 TCGA-HU-A4GX-01 9 134151373 134151373 C T FAM78A Missense_Mutation p.R65Q 0.26 tolerated(0.08) probably_damaging(0.995) TCGA-HU-A4GX-01 9 135537941 135537941 T - DDX31 Frame_Shift_Del p.M178Cfs*42 0.16 TCGA-HU-A4GX-01 9 135771922 135771922 C T TSC1 Silent p.T1065T 0.32 TCGA-HU-A4GX-01 9 135927498 135927498 A G GTF3C5 Missense_Mutation p.S274G 0.29 tolerated(0.36) benign(0.011) TCGA-HU-A4GX-01 9 135940544 135940544 G A CEL Missense_Mutation p.R156H 0.09 deleterious(0.03) probably_damaging(0.973) TCGA-HU-A4GX-01 9 135940576 135940576 C T CEL Missense_Mutation p.R167C 0.10 deleterious(0) probably_damaging(1) TCGA-HU-A4GX-01 9 136573535 136573535 C T SARDH Silent p.S448S 0.27 TCGA-HU-A4GX-01 9 137300840 137300840 C T RXRA Missense_Mutation p.T162M 0.34 deleterious(0) probably_damaging(1) TCGA-HU-A4GX-01 9 138438642 138438642 G A OBP2A Missense_Mutation p.V31M 0.16 deleterious(0.03) benign(0.113) TCGA-HU-A4GX-01 9 138515882 138515882 C T GLT6D1 3'UTR 0.27 TCGA-HU-A4GX-01 9 138657599 138657599 C T KCNT1 Nonsense_Mutation p.R444* 0.39 TCGA-HU-A4GX-01 9 138703236 138703236 A C CAMSAP1 Missense_Mutation p.S1576R 0.26 deleterious(0) probably_damaging(1) TCGA-HU-A4GX-01 9 139137477 139137477 G A QSOX2 Missense_Mutation p.A58V 0.32 deleterious(0.02) unknown(0) TCGA-HU-A4GX-01 9 139396207 139396207 G A NOTCH1 Silent p.R1877R 0.27 TCGA-HU-A4GX-01 9 139740046 139740046 C T C9orf172 Missense_Mutation p.H394Y 0.26 tolerated(1) benign(0.002) TCGA-HU-A4GX-01 9 139745008 139745008 T A PHPT1 Intron 0.18 TCGA-HU-A4GX-01 9 139820211 139820212 - T TRAF2 Frame_Shift_Ins p.Q457Sfs*277 0.21 TCGA-HU-A4GX-01 9 140325730 140325730 C - NOXA1 Frame_Shift_Del p.L249Sfs*66 0.18 TCGA-HU-A4GX-01 9 141015984 141015984 G A CACNA1B Missense_Mutation p.G2185S 0.31 tolerated(0.4) benign(0.146) TCGA-HU-A4GX-01 9 141070209 141070209 G A TUBBP5 Intron 0.20 TCGA-HU-A4GX-01 9 15745548 15745548 C A CCDC171 Missense_Mutation p.L864I 0.27 deleterious(0.01) benign(0.121) TCGA-HU-A4GX-01 9 19516162 19516162 C T SLC24A2 Missense_Mutation p.V659I 0.20 tolerated(0.2) benign(0.034) TCGA-HU-A4GX-01 9 2039686 2039686 G A SMARCA2 Silent p.L192L 0.27 TCGA-HU-A4GX-01 9 21971114 21971114 C T CDKN2A Missense_Mutation p.V82M 0.22 deleterious(0) probably_damaging(0.966) TCGA-HU-A4GX-01 9 2645662 2645662 G T VLDLR Missense_Mutation p.Q467H 0.18 tolerated(0.08) probably_damaging(0.95) TCGA-HU-A4GX-01 9 2837315 2837315 T A KIAA0020 Missense_Mutation p.I57F 0.31 tolerated(0.59) benign(0.001) TCGA-HU-A4GX-01 9 33056197 33056197 G A SMU1 Missense_Mutation p.R346C 0.21 deleterious(0.03) benign(0.4) TCGA-HU-A4GX-01 9 33294844 33294846 CTT - NFX1 In_Frame_Del p.S152del 0.30 TCGA-HU-A4GX-01 9 34370908 34370908 G A KIAA1161 Silent p.P644P 0.26 TCGA-HU-A4GX-01 9 36170715 36170715 G A CCIN Missense_Mutation p.A406T 0.23 tolerated(0.39) benign(0.209) TCGA-HU-A4GX-01 9 40774385 40774385 T C ZNF658 Missense_Mutation p.Y297C 0.21 tolerated(0.18) benign(0.003) TCGA-HU-A4GX-01 9 5231719 5231719 G A INSL4 Missense_Mutation p.E66K 0.31 tolerated(0.31) possibly_damaging(0.801) TCGA-HU-A4GX-01 9 71628547 71628547 G T PRKACG Silent p.A154A 0.21 TCGA-HU-A4GX-01 9 71628605 71628605 C T PRKACG Missense_Mutation p.R135H 0.12 deleterious(0.02) benign(0.337) TCGA-HU-A4GX-01 9 72913007 72913007 C T SMC5 Silent p.C393C 0.21 TCGA-HU-A4GX-01 9 79635850 79635850 C T FOXB2 Missense_Mutation p.S427L 0.29 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-HU-A4GX-01 9 79984308 79984308 T - VPS13A Frame_Shift_Del p.Y2885Mfs*20 0.19 TCGA-HU-A4GX-01 9 82335100 82335100 C - TLE4 Frame_Shift_Del p.A579Pfs*34 0.17 TCGA-HU-A4GX-01 9 88960693 88960693 C T ZCCHC6 Missense_Mutation p.R237Q 0.20 tolerated(0.13) probably_damaging(0.917) TCGA-HU-A4GX-01 9 90315079 90315079 C T DAPK1 Missense_Mutation p.A933V 0.20 deleterious(0.04) possibly_damaging(0.637) TCGA-HU-A4GX-01 9 91964832 91964832 G A SECISBP2 Missense_Mutation p.R627H 0.25 deleterious(0) probably_damaging(0.991) TCGA-HU-A4GX-01 9 92003589 92003589 G A SEMA4D Missense_Mutation p.R357C 0.29 deleterious(0.01) probably_damaging(0.961) TCGA-HU-A4GX-01 9 94809549 94809549 C T SPTLC1 Missense_Mutation p.R329Q 0.26 deleterious(0) probably_damaging(0.971) TCGA-HU-A4GX-01 9 95397511 95397511 C T IPPK Silent p.L332L 0.25 TCGA-HU-A4GX-01 9 95481295 95481295 G T BICD2 Nonsense_Mutation p.C544* 0.21 TCGA-HU-A4GX-01 9 95610082 95610082 T C ZNF484 Silent p.K331K 0.25 TCGA-HU-A4GX-01 9 96435920 96435920 T C PHF2 Missense_Mutation p.M801T 0.22 deleterious(0) unknown(0) TCGA-HU-A4GX-01 X 10085333 10085333 C T WWC3 Missense_Mutation p.R412C 0.30 deleterious(0) probably_damaging(0.969) TCGA-HU-A4GX-01 X 101138596 101138596 G A ZMAT1 Silent p.S601S 0.25 TCGA-HU-A4GX-01 X 101382501 101382502 - T TCEAL2 3'UTR 0.17 TCGA-HU-A4GX-01 X 101768947 101768947 A - TMSB15A 3'UTR 0.08 TCGA-HU-A4GX-01 X 101912159 101912159 G A GPRASP1 Silent p.Q1106Q 0.19 TCGA-HU-A4GX-01 X 102318161 102318161 C T BEX1 Missense_Mutation p.M14I 0.28 tolerated(0.08) benign(0.026) TCGA-HU-A4GX-01 X 103080513 103080513 G A RAB9B Missense_Mutation p.R68C 0.27 deleterious(0) probably_damaging(1) TCGA-HU-A4GX-01 X 103349129 103349129 C T SLC25A53 Missense_Mutation p.R271H 0.34 deleterious(0) probably_damaging(1) TCGA-HU-A4GX-01 X 105449632 105449632 A G MUM1L1 Silent p.S69S 0.16 TCGA-HU-A4GX-01 X 106236506 106236506 C T MORC4 Missense_Mutation p.D88N 0.26 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GX-01 X 107976125 107976125 G T IRS4 Silent p.A1150A 0.28 TCGA-HU-A4GX-01 X 109561047 109561047 G A AMMECR1 Silent p.L85L 0.60 TCGA-HU-A4GX-01 X 11139095 11139095 G A HCCS Missense_Mutation p.R197Q 0.21 deleterious(0) possibly_damaging(0.658) TCGA-HU-A4GX-01 X 111914299 111914299 C T LHFPL1 Missense_Mutation p.C107Y 0.23 deleterious(0.01) probably_damaging(0.996) TCGA-HU-A4GX-01 X 119293198 119293198 G A RHOXF2 Silent p.S119S 0.10 TCGA-HU-A4GX-01 X 119387796 119387796 G A ZBTB33 Missense_Mutation p.E176K 0.27 tolerated(0.1) benign(0.004) TCGA-HU-A4GX-01 X 122799612 122799612 T C THOC2 Missense_Mutation p.S423G 0.22 deleterious(0.03) benign(0.097) TCGA-HU-A4GX-01 X 123554484 123554484 C T TENM1 Silent p.Q1553Q 0.23 TCGA-HU-A4GX-01 X 125299917 125299917 C T DCAF12L2 Intron 0.29 TCGA-HU-A4GX-01 X 128614736 128614736 C T SMARCA1 Missense_Mutation p.R795H 0.16 deleterious(0) possibly_damaging(0.88) TCGA-HU-A4GX-01 X 128927705 128927705 G A SASH3 Missense_Mutation p.R347H 0.25 deleterious(0) probably_damaging(0.994) TCGA-HU-A4GX-01 X 12904062 12904062 C T TLR7 Silent p.G145G 0.23 TCGA-HU-A4GX-01 X 135289288 135289289 - A FHL1 Frame_Shift_Ins p.C92Vfs*39 0.16 TCGA-HU-A4GX-01 X 135328224 135328224 C T MAP7D3 Missense_Mutation p.A85T 0.17 deleterious(0) probably_damaging(0.992) TCGA-HU-A4GX-01 X 136649822 136649822 C T ZIC3 Silent p.G324G 0.26 TCGA-HU-A4GX-01 X 139586357 139586357 G A SOX3 Missense_Mutation p.P290L 0.44 tolerated(0.37) probably_damaging(0.977) TCGA-HU-A4GX-01 X 144905987 144905987 G A SLITRK2 Missense_Mutation p.G682S 0.26 tolerated(0.2) benign(0.256) TCGA-HU-A4GX-01 X 14748344 14748344 C T GLRA2 Missense_Mutation p.R366C 0.23 deleterious(0.03) possibly_damaging(0.791) TCGA-HU-A4GX-01 X 148059471 148059471 T C AFF2 Missense_Mutation p.M1138T 0.22 deleterious(0) probably_damaging(0.945) TCGA-HU-A4GX-01 X 148585690 148585690 C T IDS Silent p.A79A 0.31 TCGA-HU-A4GX-01 X 149012986 149012986 C A MAGEA8 Intron 0.17 TCGA-HU-A4GX-01 X 152226687 152226687 A G PNMA3 Silent p.V425V 0.26 TCGA-HU-A4GX-01 X 152612323 152612323 G A ZNF275 Silent p.Q60Q 0.33 TCGA-HU-A4GX-01 X 152612855 152612855 G A ZNF275 Missense_Mutation p.A238T 0.25 tolerated(0.43) possibly_damaging(0.477) TCGA-HU-A4GX-01 X 153095783 153095783 C T PDZD4 5'UTR 0.29 TCGA-HU-A4GX-01 X 153578054 153578054 G A FLNA Silent p.Y2505Y 0.31 TCGA-HU-A4GX-01 X 153667454 153667454 T C GDI1 Missense_Mutation p.V119A 0.24 deleterious(0.01) possibly_damaging(0.894) TCGA-HU-A4GX-01 X 153688788 153688788 C T PLXNA3 Missense_Mutation p.R89C 0.23 tolerated(0.05) possibly_damaging(0.616) TCGA-HU-A4GX-01 X 153996672 153996672 C A DKC1 Missense_Mutation p.L246I 0.26 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GX-01 X 154490502 154490502 G A RAB39B Silent p.R76R 0.28 TCGA-HU-A4GX-01 X 155255057 155255058 - C WASH6P RNA 0.21 TCGA-HU-A4GX-01 X 1584341 1584341 C - P2RY8 3'UTR 0.19 TCGA-HU-A4GX-01 X 20195138 20195138 T C RPS6KA3 Missense_Mutation p.K304E 0.21 tolerated(0.08) probably_damaging(0.932) TCGA-HU-A4GX-01 X 21675899 21675899 T C KLHL34 Missense_Mutation p.Y3C 0.16 deleterious(0) probably_damaging(0.999) TCGA-HU-A4GX-01 X 21887644 21887644 T - MBTPS2 Frame_Shift_Del p.F274Lfs*24 0.23 TCGA-HU-A4GX-01 X 22291397 22291397 C T ZNF645 Missense_Mutation p.R97C 0.33 deleterious(0.01) benign(0.069) TCGA-HU-A4GX-01 X 23411097 23411097 A G PTCHD1 Missense_Mutation p.K488E 0.27 deleterious(0.01) possibly_damaging(0.63) TCGA-HU-A4GX-01 X 30327182 30327182 G A NR0B1 Missense_Mutation p.T100M 0.30 deleterious_low_confidence(0) benign(0.027) TCGA-HU-A4GX-01 X 31496273 31496273 C T DMD Missense_Mutation p.V2963M 0.26 possibly_damaging(0.791) TCGA-HU-A4GX-01 X 3238046 3238046 T C MXRA5 Intron 0.23 TCGA-HU-A4GX-01 X 34148203 34148203 G A FAM47A Silent p.D731D 0.28 TCGA-HU-A4GX-01 X 34648577 34648577 G A TMEM47 Silent p.Y133Y 0.32 TCGA-HU-A4GX-01 X 38128998 38128998 C A TM4SF2 Intron 0.31 TCGA-HU-A4GX-01 X 39916518 39916518 G A BCOR Silent p.N1495N 0.25 TCGA-HU-A4GX-01 X 41205517 41205517 A - DDX3X Frame_Shift_Del p.K452Rfs*44 0.19 TCGA-HU-A4GX-01 X 44703983 44703983 C T DUSP21 3'UTR 0.30 TCGA-HU-A4GX-01 X 47060960 47060960 G T UBA1 Missense_Mutation p.Q254H 0.20 deleterious(0.02) benign(0.019) TCGA-HU-A4GX-01 X 47842802 47842802 T C ZNF182 Missense_Mutation p.T28A 0.26 deleterious(0) benign(0.004) TCGA-HU-A4GX-01 X 48341409 48341409 C G FTSJ1 3'UTR 0.17 TCGA-HU-A4GX-01 X 51239053 51239053 C T NUDT11 Missense_Mutation p.V82I 0.24 tolerated(0.66) benign(0.003) TCGA-HU-A4GX-01 X 51643311 51643311 C - MAGED1 Frame_Shift_Del p.P684Rfs*18 0.19 TCGA-HU-A4GX-01 X 53106555 53106555 G A GPR173 Missense_Mutation p.R251H 0.28 deleterious(0.01) benign(0.418) TCGA-HU-A4GX-01 X 55777621 55777621 C A RRAGB Missense_Mutation p.L230I 0.39 deleterious(0.01) probably_damaging(0.984) TCGA-HU-A4GX-01 X 5821684 5821684 G A NLGN4X Silent p.D345D 0.24 TCGA-HU-A4GX-01 X 69478463 69478463 C A P2RY4 Missense_Mutation p.V338L 0.19 tolerated(0.1) benign(0.006) TCGA-HU-A4GX-01 X 70288194 70288194 G - SNX12 5'UTR 0.27 TCGA-HU-A4GX-01 X 70341237 70341237 C T MED12 Missense_Mutation p.R266C 0.27 probably_damaging(0.988) TCGA-HU-A4GX-01 X 70586333 70586333 G A TAF1 Missense_Mutation p.V57I 0.22 tolerated(0.47) benign(0.012) TCGA-HU-A4GX-01 X 70787390 70787390 G A OGT Missense_Mutation p.R877H 0.23 deleterious(0) probably_damaging(1) TCGA-HU-A4GX-01 X 71349880 71349880 C T RGAG4 Missense_Mutation p.S504N 0.24 tolerated_low_confidence(0.12) unknown(0) TCGA-HU-A4GX-01 X 71358762 71358762 C T NHSL2 Missense_Mutation p.A455V 0.22 tolerated(0.09) benign(0.008) TCGA-HU-A4GX-01 X 71549549 71549549 T G HDAC8 3'UTR 0.30 TCGA-HU-A4GX-01 X 71873292 71873292 G A PHKA1 Missense_Mutation p.P377L 0.38 tolerated(0.39) benign(0.006) TCGA-HU-A4GX-01 X 7268249 7268249 G A STS Missense_Mutation p.G567S 0.29 tolerated(0.42) benign(0.001) TCGA-HU-A4GX-01 X 73963374 73963374 T C KIAA2022 Missense_Mutation p.S340G 0.29 deleterious(0) possibly_damaging(0.693) TCGA-HU-A4GX-01 X 77528587 77528587 T - CYSLTR1 Frame_Shift_Del p.K219Nfs*3 0.18 TCGA-HU-A4GX-01 X 82763850 82763850 G A POU3F4 Missense_Mutation p.G173D 0.30 tolerated(0.31) benign(0.001) TCGA-HU-A4GX-01 X 84534384 84534384 A C POF1B 3'UTR 0.30 TCGA-HU-A4GX-01 X 8504931 8504931 G A KAL1 Missense_Mutation p.T501I 0.23 tolerated(0.24) benign(0.005) TCGA-HU-A4GX-01 X 85211332 85211332 G T CHM Missense_Mutation p.P331H 0.14 deleterious(0) probably_damaging(0.977) TCGA-HU-A4GX-01 X 88008656 88008656 C T CPXCR1 Nonsense_Mutation p.R81* 0.22 TCGA-HU-A4GX-01 X 90691323 90691323 C T PABPC5 Silent p.H249H 0.16 TCGA-HU-A4GX-01 X 99931117 99931117 G T SYTL4 Missense_Mutation p.L642M 0.27 deleterious(0.05) probably_damaging(0.999) TCGA-HU-A4GY-01 10 12206477 12206477 C T SEC61A2 3'UTR 0.06 TCGA-HU-A4GY-01 10 27149760 27149760 C T ABI1 Silent p.E11E 0.08 TCGA-HU-A4GY-01 10 43693520 43693520 C T RASGEF1A Missense_Mutation p.V386I 0.16 tolerated(1) benign(0.006) TCGA-HU-A4GY-01 10 81064968 81064968 C A ZMIZ1 Silent p.T778T 0.07 TCGA-HU-A4GY-01 11 1093720 1093720 T G MUC2 Missense_Mutation p.L1847V 0.05 unknown(0) TCGA-HU-A4GY-01 11 120744839 120744839 G A GRIK4 Missense_Mutation p.R324Q 0.11 deleterious(0.03) benign(0.263) TCGA-HU-A4GY-01 11 121028745 121028745 G A TECTA Missense_Mutation p.A1501T 0.10 tolerated(0.09) probably_damaging(0.989) TCGA-HU-A4GY-01 11 123847677 123847677 C T OR10S1 Missense_Mutation p.R241H 0.16 deleterious(0.01) possibly_damaging(0.709) TCGA-HU-A4GY-01 11 96124870 96124872 CTG - JRKL In_Frame_Del p.L353del 0.18 TCGA-HU-A4GY-01 12 106633919 106633919 G A CKAP4 Missense_Mutation p.T231M 0.09 tolerated(0.07) probably_damaging(0.972) TCGA-HU-A4GY-01 12 1995426 1995426 T A CACNA2D4 Missense_Mutation p.D319V 0.23 deleterious(0) probably_damaging(0.998) TCGA-HU-A4GY-01 12 47471424 47471424 G A AMIGO2 Silent p.S454S 0.10 TCGA-HU-A4GY-01 12 53899824 53899824 C T TARBP2 Silent p.T331T 0.10 TCGA-HU-A4GY-01 14 59113462 59113462 G A DACT1 Silent p.A707A 0.21 TCGA-HU-A4GY-01 16 30119574 30119574 C T GDPD3 Missense_Mutation p.R260K 0.08 deleterious(0.04) probably_damaging(0.995) TCGA-HU-A4GY-01 16 3140151 3140151 G A ZSCAN10 Silent p.S373S 0.05 TCGA-HU-A4GY-01 17 48940665 48940665 C T TOB1 Silent p.Q238Q 0.09 TCGA-HU-A4GY-01 17 61838708 61838708 T C CCDC47 Missense_Mutation p.D184G 0.09 deleterious(0) probably_damaging(1) TCGA-HU-A4GY-01 17 71389865 71389865 C T SDK2 Silent p.S1244S 0.09 TCGA-HU-A4GY-01 18 32949588 32949588 G A ZNF396 Missense_Mutation p.S200L 0.14 tolerated(0.16) benign(0.01) TCGA-HU-A4GY-01 19 15989556 15989556 G A CYP4F2 3'UTR 0.06 TCGA-HU-A4GY-01 19 42479904 42479904 C T ATP1A3 Missense_Mutation p.A727T 0.08 deleterious(0.01) benign(0.132) TCGA-HU-A4GY-01 19 46326634 46326634 T A SYMPK Missense_Mutation p.E899V 0.04 tolerated(0.07) possibly_damaging(0.744) TCGA-HU-A4GY-01 19 46915005 46915005 C A CCDC8 Missense_Mutation p.A355S 0.07 benign(0.38) TCGA-HU-A4GY-01 19 48519257 48519257 T G ELSPBP1 Missense_Mutation p.F106V 0.07 deleterious(0) possibly_damaging(0.812) TCGA-HU-A4GY-01 19 49539000 49539000 C T CGB1 Missense_Mutation p.R112H 0.06 tolerated(0.06) benign(0.078) TCGA-HU-A4GY-01 19 50662827 50662827 C A IZUMO2 Silent p.L106L 0.12 TCGA-HU-A4GY-01 19 54445295 54445295 C T CACNG7 Silent p.A192A 0.16 TCGA-HU-A4GY-01 19 55401080 55401080 G A FCAR Missense_Mutation p.V239M 0.12 tolerated(0.15) benign(0.104) TCGA-HU-A4GY-01 19 9008193 9008193 C T MUC16 Missense_Mutation p.R13120Q 0.12 probably_damaging(0.966) TCGA-HU-A4GY-01 19 9015712 9015712 T G MUC16 Missense_Mutation p.N12704T 0.06 benign(0.136) TCGA-HU-A4GY-01 1 12170181 12170181 G A TNFRSF8 Missense_Mutation p.R199H 0.13 tolerated(0.2) benign(0.004) TCGA-HU-A4GY-01 1 17402248 17402248 C A PADI2 Nonsense_Mutation p.E461* 0.08 TCGA-HU-A4GY-01 1 185947011 185947011 C T HMCN1 Missense_Mutation p.P822S 0.10 probably_damaging(0.996) TCGA-HU-A4GY-01 1 192548268 192548268 T A RGS1 Missense_Mutation p.I149N 0.11 deleterious(0) probably_damaging(1) TCGA-HU-A4GY-01 1 200014579 200014579 T C NR5A2 Silent p.F110F 0.09 TCGA-HU-A4GY-01 1 207871117 207871117 G T CR1L Silent p.V347V 0.08 TCGA-HU-A4GY-01 1 20971110 20971110 C T PINK1 Missense_Mutation p.R302C 0.09 tolerated(0.08) benign(0.082) TCGA-HU-A4GY-01 1 248224695 248224695 C G OR2L3 Missense_Mutation p.L238V 0.10 deleterious(0.01) benign(0.005) TCGA-HU-A4GY-01 1 24989244 24989244 C T SRRM1 Missense_Mutation p.S526F 0.08 benign(0.184) TCGA-HU-A4GY-01 1 29040683 29040683 C T GMEB1 Missense_Mutation p.P374S 0.10 deleterious(0.03) probably_damaging(0.996) TCGA-HU-A4GY-01 1 70505053 70505053 C A LRRC7 Silent p.G1144G 0.08 TCGA-HU-A4GY-01 1 74834948 74834948 G A FPGT-TNNI3K Missense_Mutation p.R605H 0.08 tolerated(0.14) probably_damaging(0.917) TCGA-HU-A4GY-01 1 79357356 79357356 G A ELTD1 Silent p.L621L 0.09 TCGA-HU-A4GY-01 20 33575071 33575071 G A MYH7B Silent p.A418A 0.06 TCGA-HU-A4GY-01 20 44592422 44592422 C T ZNF335 Missense_Mutation p.R437H 0.06 deleterious(0.03) probably_damaging(0.978) TCGA-HU-A4GY-01 20 47260992 47260992 C T PREX1 Missense_Mutation p.V1186M 0.18 tolerated(0.09) benign(0.15) TCGA-HU-A4GY-01 20 57415370 57415370 G A RP4-806M20.3 5'Flank 0.19 TCGA-HU-A4GY-01 20 61943088 61943088 C T COL20A1 Missense_Mutation p.R551C 0.33 deleterious(0.05) possibly_damaging(0.462) TCGA-HU-A4GY-01 2 24964753 24964753 T A NCOA1 Missense_Mutation p.M1135K 0.10 deleterious(0) benign(0.084) TCGA-HU-A4GY-01 3 58413835 58413835 T C PDHB Missense_Mutation p.K336E 0.18 tolerated(0.59) benign(0.035) TCGA-HU-A4GY-01 4 123178476 123178476 A C KIAA1109 Missense_Mutation p.K2149Q 0.04 probably_damaging(0.968) TCGA-HU-A4GY-01 4 126240497 126240497 C T FAT4 Silent p.S977S 0.08 TCGA-HU-A4GY-01 4 44176968 44176968 G A KCTD8 Missense_Mutation p.R421W 0.09 deleterious(0) possibly_damaging(0.756) TCGA-HU-A4GY-01 4 8009905 8009905 A G ABLIM2 Missense_Mutation p.L500P 0.10 deleterious(0.03) benign(0.007) TCGA-HU-A4GY-01 5 102490450 102490450 G T PPIP5K2 Splice_Site p.X431_splice 0.10 TCGA-HU-A4GY-01 5 135188428 135188428 C T SLC25A48 Silent p.A113A 0.10 TCGA-HU-A4GY-01 5 140202806 140202806 C T PCDHA5 Silent p.D482D 0.19 TCGA-HU-A4GY-01 5 140250862 140250862 C T PCDHA11 Missense_Mutation p.T725M 0.22 tolerated_low_confidence(0.07) benign(0.002) TCGA-HU-A4GY-01 5 59899243 59899243 C T DEPDC1B Missense_Mutation p.R406H 0.10 tolerated(1) benign(0.002) TCGA-HU-A4GY-01 6 105606547 105606547 C T POPDC3 Missense_Mutation p.R225H 0.07 deleterious(0.04) probably_damaging(1) TCGA-HU-A4GY-01 6 109871483 109871483 C A AK9 Missense_Mutation p.R925I 0.08 deleterious(0.01) benign(0.068) TCGA-HU-A4GY-01 6 111696395 111696395 C A REV3L Missense_Mutation p.A1055S 0.11 tolerated(0.18) benign(0.184) TCGA-HU-A4GY-01 6 132966508 132966508 C A TAAR1 Missense_Mutation p.R212I 0.08 deleterious(0) probably_damaging(0.958) TCGA-HU-A4GY-01 6 151266671 151266671 G A MTHFD1L Silent p.R539R 0.05 TCGA-HU-A4GY-01 6 161152156 161152156 G A PLG Missense_Mutation p.V444I 0.06 deleterious(0.04) possibly_damaging(0.603) TCGA-HU-A4GY-01 6 32035444 32035444 C T TNXB Missense_Mutation p.V2180I 0.06 benign(0.159) TCGA-HU-A4GY-01 6 52761496 52761496 G A GSTA3 3'UTR 0.24 TCGA-HU-A4GY-01 6 6589058 6589058 G A LY86 Missense_Mutation p.V31M 0.17 tolerated(0.16) benign(0.001) TCGA-HU-A4GY-01 6 75847211 75847211 C T COL12A1 Missense_Mutation p.R1779H 0.19 probably_damaging(0.96) TCGA-HU-A4GY-01 6 86197098 86197098 A T NT5E Missense_Mutation p.D332V 0.06 tolerated(0.43) benign(0.01) TCGA-HU-A4GY-01 6 93955108 93955108 T A EPHA7 Missense_Mutation p.E930D 0.08 tolerated(0.81) benign(0.042) TCGA-HU-A4GY-01 7 2416710 2416710 G A EIF3B Silent p.K718K 0.15 TCGA-HU-A4GY-01 7 27831706 27831706 G A TAX1BP1 Missense_Mutation p.A374T 0.09 tolerated(0.06) benign(0.011) TCGA-HU-A4GY-01 7 42957154 42957154 T G PSMA2 3'UTR 0.14 TCGA-HU-A4GY-01 8 121706119 121706119 C T SNTB1 Missense_Mutation p.V201M 0.05 deleterious(0.03) possibly_damaging(0.763) TCGA-HU-A4GY-01 8 81889066 81889066 C A PAG1 Nonsense_Mutation p.E338* 0.23 TCGA-HU-A4GY-01 X 10176607 10176607 A T CLCN4 Missense_Mutation p.T456S 0.21 tolerated(0.05) probably_damaging(0.951) TCGA-HU-A4GY-01 X 1755356 1755356 G A ASMT Silent p.P271P 0.10 TCGA-HU-A4GY-01 X 55513741 55513741 T C USP51 Silent p.P544P 0.21 TCGA-HU-A4H0-01 10 100503772 100503772 C T HPSE2 Missense_Mutation p.G218R 0.21 deleterious(0.01) probably_damaging(0.993) TCGA-HU-A4H0-01 10 102740027 102740027 G A SEMA4G Missense_Mutation p.R426H 0.11 tolerated(0.63) benign(0.015) TCGA-HU-A4H0-01 10 104176654 104176654 G A PSD Missense_Mutation p.R48W 0.19 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-HU-A4H0-01 10 134004331 134004331 C A DPYSL4 Silent p.G40G 0.19 TCGA-HU-A4H0-01 10 17061890 17061890 G A CUBN Silent p.L1370L 0.21 TCGA-HU-A4H0-01 10 28023604 28023604 G A MKX Missense_Mutation p.R207W 0.11 deleterious(0.01) benign(0.386) TCGA-HU-A4H0-01 10 50830161 50830161 C T CHAT Silent p.I239I 0.19 TCGA-HU-A4H0-01 10 70333412 70333412 A G TET1 Silent p.P439P 0.16 TCGA-HU-A4H0-01 10 74804763 74804763 G A P4HA1 Missense_Mutation p.T375M 0.13 tolerated(0.07) probably_damaging(0.937) TCGA-HU-A4H0-01 10 84744956 84744956 C T NRG3 Silent p.D562D 0.17 TCGA-HU-A4H0-01 10 85982145 85982145 G A LRIT2 Missense_Mutation p.T395I 0.12 deleterious(0) probably_damaging(0.931) TCGA-HU-A4H0-01 10 87615903 87615903 G A GRID1 Silent p.N332N 0.15 TCGA-HU-A4H0-01 11 120168972 120168972 A G POU2F3 Splice_Site p.X47_splice 0.21 TCGA-HU-A4H0-01 11 30033593 30033593 G A KCNA4 Silent p.Y211Y 0.12 TCGA-HU-A4H0-01 11 47361309 47361309 G A MYBPC3 Missense_Mutation p.R654C 0.15 deleterious(0.04) benign(0.06) TCGA-HU-A4H0-01 11 51515980 51515980 A T OR4C46 Missense_Mutation p.K233N 0.26 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-HU-A4H0-01 11 5510438 5510438 C T OR52D1 Nonsense_Mutation p.R168* 0.05 TCGA-HU-A4H0-01 11 55681708 55681708 C T OR5W2 Silent p.V117V 0.14 TCGA-HU-A4H0-01 11 56380614 56380614 C T OR5M1 Missense_Mutation p.R122H 0.10 deleterious(0.01) benign(0.046) TCGA-HU-A4H0-01 11 60702763 60702763 G A TMEM132A Missense_Mutation p.A627T 0.38 tolerated(1) benign(0.01) TCGA-HU-A4H0-01 11 62293791 62293791 T C AHNAK Missense_Mutation p.M2700V 0.05 benign(0.236) TCGA-HU-A4H0-01 11 62297323 62297323 G A AHNAK Silent p.G1522G 0.14 TCGA-HU-A4H0-01 11 67219257 67219257 G A GPR152 Silent p.F313F 0.21 TCGA-HU-A4H0-01 11 77340917 77340917 T C CLNS1A Silent p.G51G 0.18 TCGA-HU-A4H0-01 11 9047254 9047254 T C SCUBE2 Missense_Mutation p.Y893C 0.15 deleterious(0.02) probably_damaging(1) TCGA-HU-A4H0-01 12 106461416 106461416 C A NUAK1 Missense_Mutation p.A384S 0.15 tolerated(0.39) benign(0.001) TCGA-HU-A4H0-01 12 108634186 108634186 G A WSCD2 Missense_Mutation p.G404S 0.17 deleterious(0.05) benign(0.029) TCGA-HU-A4H0-01 12 109945375 109945375 C T UBE3B Missense_Mutation p.T486I 0.19 deleterious(0.05) possibly_damaging(0.482) TCGA-HU-A4H0-01 12 111908438 111908438 G A ATXN2 Missense_Mutation p.T1036M 0.16 probably_damaging(0.915) TCGA-HU-A4H0-01 12 113866986 113866986 C A SDSL Missense_Mutation p.A79D 0.07 deleterious(0) probably_damaging(0.995) TCGA-HU-A4H0-01 12 120621399 120621399 C T GCN1L1 Silent p.K133K 0.14 TCGA-HU-A4H0-01 12 129559126 129559126 T G TMEM132D Missense_Mutation p.K865T 0.24 tolerated(0.16) benign(0.055) TCGA-HU-A4H0-01 12 132396496 132396496 G A ULK1 Missense_Mutation p.E320K 0.23 deleterious(0.01) benign(0.154) TCGA-HU-A4H0-01 12 49087819 49087819 C T CCNT1 Missense_Mutation p.R393H 0.04 deleterious(0) probably_damaging(0.994) TCGA-HU-A4H0-01 12 57317711 57317711 G T SDR9C7 Missense_Mutation p.A283D 0.20 deleterious(0) possibly_damaging(0.772) TCGA-HU-A4H0-01 12 66765682 66765682 A T GRIP1 Missense_Mutation p.M883K 0.25 tolerated(0.15) benign(0.003) TCGA-HU-A4H0-01 12 67696319 67696319 G A CAND1 Missense_Mutation p.R406H 0.15 tolerated(0.06) probably_damaging(0.961) TCGA-HU-A4H0-01 12 8689759 8689759 G A CLEC4E Silent p.C108C 0.12 TCGA-HU-A4H0-01 12 89917407 89917407 G C GALNT4 Missense_Mutation p.P307R 0.21 deleterious(0) probably_damaging(1) TCGA-HU-A4H0-01 13 111862258 111862258 C T ARHGEF7 Missense_Mutation p.S147L 0.13 deleterious_low_confidence(0.02) possibly_damaging(0.54) TCGA-HU-A4H0-01 13 114203987 114203987 G A TMCO3 3'UTR 0.30 TCGA-HU-A4H0-01 13 27255334 27255334 G T WASF3 Missense_Mutation p.R287L 0.20 deleterious(0.02) possibly_damaging(0.9) TCGA-HU-A4H0-01 13 27256945 27256945 G A WASF3 Silent p.P395P 0.11 TCGA-HU-A4H0-01 13 67799994 67799994 T - PCDH9 Frame_Shift_Del p.N860Tfs*23 0.14 TCGA-HU-A4H0-01 13 72255950 72255950 G T DACH1 Missense_Mutation p.S316Y 0.10 probably_damaging(0.997) TCGA-HU-A4H0-01 13 86368839 86368839 G A SLITRK6 Missense_Mutation p.T602M 0.21 deleterious(0.01) possibly_damaging(0.715) TCGA-HU-A4H0-01 14 106963150 106963150 G A IGHV1-45 Silent p.S44S 0.11 TCGA-HU-A4H0-01 14 23887536 23887536 G A MYH7 Missense_Mutation p.T1351M 0.11 deleterious(0.03) benign(0.029) TCGA-HU-A4H0-01 14 68191269 68191269 G A RDH12 Missense_Mutation p.G50S 0.24 deleterious(0) probably_damaging(1) TCGA-HU-A4H0-01 14 75140795 75140795 A C AREL1 Missense_Mutation p.F367C 0.35 deleterious(0) probably_damaging(0.936) TCGA-HU-A4H0-01 14 77710781 77710781 C T TMEM63C Silent p.L477L 0.13 TCGA-HU-A4H0-01 14 79175849 79175849 A T NRXN3 Missense_Mutation p.K131I 0.21 deleterious(0.01) probably_damaging(0.99) TCGA-HU-A4H0-01 15 23812235 23812235 G T MKRN3 Missense_Mutation p.G436W 0.17 deleterious(0) probably_damaging(0.985) TCGA-HU-A4H0-01 15 24923936 24923936 T A NPAP1 Missense_Mutation p.N974K 0.33 tolerated(0.81) benign(0.021) TCGA-HU-A4H0-01 15 40914746 40914746 A G CASC5 Missense_Mutation p.M788V 0.16 deleterious(0) probably_damaging(0.997) TCGA-HU-A4H0-01 15 45697549 45697549 G A SPATA5L1 Missense_Mutation p.R374K 0.17 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H0-01 15 51250863 51250863 A T AP4E1 Missense_Mutation p.I575F 0.21 deleterious(0.01) benign(0.367) TCGA-HU-A4H0-01 15 64968058 64968058 G A ZNF609 Missense_Mutation p.R1002Q 0.17 deleterious(0.04) probably_damaging(0.999) TCGA-HU-A4H0-01 15 74290464 74290464 G A PML Silent p.A83A 0.12 TCGA-HU-A4H0-01 15 83218340 83218340 G T CPEB1 Silent p.P423P 0.20 TCGA-HU-A4H0-01 16 1245065 1245065 G C CACNA1H Missense_Mutation p.E131D 0.14 tolerated(0.34) benign(0.401) TCGA-HU-A4H0-01 16 3786141 3786141 C T CREBBP Missense_Mutation p.G1542S 0.20 unknown(0) TCGA-HU-A4H0-01 16 4384894 4384894 C T GLIS2 Silent p.A146A 0.19 TCGA-HU-A4H0-01 16 48385682 48385682 C T LONP2 Missense_Mutation p.T843I 0.22 tolerated_low_confidence(0.15) benign(0.052) TCGA-HU-A4H0-01 16 49670153 49670153 C T ZNF423 Silent p.S970S 0.29 TCGA-HU-A4H0-01 16 52473731 52473731 G A TOX3 Silent p.L379L 0.22 TCGA-HU-A4H0-01 16 54966510 54966510 G A IRX5 Missense_Mutation p.R117Q 0.15 deleterious(0) probably_damaging(0.992) TCGA-HU-A4H0-01 16 57243061 57243062 - T RSPRY1 Frame_Shift_Ins p.T161Nfs*6 0.13 TCGA-HU-A4H0-01 17 15973507 15973507 G A NCOR1 Silent p.G1495G 0.28 TCGA-HU-A4H0-01 17 28419089 28419089 C T EFCAB5 Missense_Mutation p.R1380C 0.29 deleterious(0) possibly_damaging(0.502) TCGA-HU-A4H0-01 17 37880261 37880261 G T ERBB2 Missense_Mutation p.D769Y 0.54 deleterious(0) probably_damaging(1) TCGA-HU-A4H0-01 17 48684262 48684262 C G CACNA1G Missense_Mutation p.A1475G 0.52 deleterious(0) probably_damaging(0.996) TCGA-HU-A4H0-01 17 7130478 7130478 C T DVL2 Missense_Mutation p.V492I 0.23 deleterious(0.02) possibly_damaging(0.844) TCGA-HU-A4H0-01 17 72305439 72305439 C T DNAI2 Missense_Mutation p.P420L 0.33 tolerated(0.06) benign(0.082) TCGA-HU-A4H0-01 17 73626708 73626708 G A RECQL5 Missense_Mutation p.T570I 0.18 tolerated(0.2) benign(0.004) TCGA-HU-A4H0-01 17 74134139 74134139 G A FOXJ1 Silent p.D187D 0.22 TCGA-HU-A4H0-01 17 79660574 79660574 C T HGS Missense_Mutation p.P235L 0.08 tolerated(0.07) probably_damaging(0.987) TCGA-HU-A4H0-01 18 14542645 14542645 G T POTEC Missense_Mutation p.N167K 0.13 deleterious(0) probably_damaging(0.982) TCGA-HU-A4H0-01 18 18586552 18586552 C A ROCK1 Nonsense_Mutation p.E549* 0.26 TCGA-HU-A4H0-01 18 5397321 5397321 C T EPB41L3 Silent p.E859E 0.18 TCGA-HU-A4H0-01 18 59195252 59195252 A C CDH20 Missense_Mutation p.N357T 0.28 deleterious(0) probably_damaging(0.938) TCGA-HU-A4H0-01 18 61170871 61170871 G C SERPINB5 Missense_Mutation p.L348F 0.41 tolerated(1) benign(0.001) TCGA-HU-A4H0-01 18 77893967 77893967 C G ADNP2 Missense_Mutation p.A224G 0.17 deleterious(0.01) possibly_damaging(0.747) TCGA-HU-A4H0-01 19 12975973 12975973 G A MAST1 Missense_Mutation p.R540Q 0.21 deleterious(0) probably_damaging(0.941) TCGA-HU-A4H0-01 19 18273827 18273827 A G PIK3R2 Missense_Mutation p.Y387C 0.19 deleterious(0.02) possibly_damaging(0.759) TCGA-HU-A4H0-01 19 18378193 18378193 G A KIAA1683 Nonsense_Mutation p.Q53* 0.13 TCGA-HU-A4H0-01 19 35842694 35842694 C T FFAR1 Silent p.P80P 0.33 TCGA-HU-A4H0-01 19 36431007 36431007 G A LRFN3 Missense_Mutation p.R227H 0.19 tolerated(0.09) possibly_damaging(0.828) TCGA-HU-A4H0-01 19 37368219 37368219 C A ZNF345 Silent p.R163R 0.47 TCGA-HU-A4H0-01 19 40196522 40196522 G A LGALS14 5'UTR 0.46 TCGA-HU-A4H0-01 19 42873066 42873066 G A MEGF8 Missense_Mutation p.G2118R 0.53 deleterious(0) probably_damaging(0.966) TCGA-HU-A4H0-01 19 43920055 43920055 C T TEX101 Missense_Mutation p.T13I 0.14 deleterious_low_confidence(0.04) possibly_damaging(0.702) TCGA-HU-A4H0-01 19 47774760 47774761 - G CCDC9 Frame_Shift_Ins p.E475Gfs*30 0.11 TCGA-HU-A4H0-01 19 51958738 51958738 G A SIGLEC8 Nonsense_Mutation p.R329* 0.21 TCGA-HU-A4H0-01 19 52327945 52327945 G A FPR3 Missense_Mutation p.R315H 0.23 tolerated(1) benign(0.002) TCGA-HU-A4H0-01 19 53855193 53855193 A G ZNF845 Missense_Mutation p.Q422R 0.07 tolerated(0.76) benign(0.302) TCGA-HU-A4H0-01 19 53855524 53855524 T C ZNF845 Silent p.F532F 0.16 TCGA-HU-A4H0-01 19 53855552 53855552 T C ZNF845 Missense_Mutation p.C542R 0.47 tolerated(0.43) benign(0) TCGA-HU-A4H0-01 1 10228247 10228247 C A UBE4B Silent p.R1084R 0.14 TCGA-HU-A4H0-01 1 10363437 10363437 A G KIF1B Intron 0.24 TCGA-HU-A4H0-01 1 115130565 115130565 G A DENND2C Missense_Mutation p.L814F 0.12 deleterious(0.01) probably_damaging(1) TCGA-HU-A4H0-01 1 115576036 115576036 C T TSHB Missense_Mutation p.A18V 0.15 tolerated(0.33) benign(0.005) TCGA-HU-A4H0-01 1 147084944 147084944 G A BCL9 Missense_Mutation p.D106N 0.16 deleterious(0) benign(0.223) TCGA-HU-A4H0-01 1 158650415 158650415 C T SPTA1 Silent p.G212G 0.11 TCGA-HU-A4H0-01 1 160321051 160321051 C T NCSTN Missense_Mutation p.P208S 0.19 deleterious(0.02) possibly_damaging(0.778) TCGA-HU-A4H0-01 1 166039404 166039404 C A FAM78B 3'UTR 0.21 TCGA-HU-A4H0-01 1 185703858 185703858 A T HMCN1 5'UTR 0.13 TCGA-HU-A4H0-01 1 196874314 196874314 A C CFHR4 Missense_Mutation p.E110D 0.18 tolerated(0.58) benign(0.297) TCGA-HU-A4H0-01 1 197168618 197168618 T C ZBTB41 Missense_Mutation p.N329S 0.17 tolerated(0.87) benign(0.01) TCGA-HU-A4H0-01 1 207642548 207642548 T C CR2 Missense_Mutation p.V263A 0.15 tolerated(1) benign(0.001) TCGA-HU-A4H0-01 1 214556785 214556785 C T PTPN14 Missense_Mutation p.G805S 0.07 tolerated(0.51) probably_damaging(0.999) TCGA-HU-A4H0-01 1 22188486 22188486 C A HSPG2 Missense_Mutation p.E1621D 0.22 benign(0.313) TCGA-HU-A4H0-01 1 236735824 236735824 T C HEATR1 Silent p.E1198E 0.16 TCGA-HU-A4H0-01 1 247920825 247920825 C T OR1C1 Missense_Mutation p.R295K 0.18 tolerated(0.86) benign(0) TCGA-HU-A4H0-01 1 247921329 247921329 C A OR1C1 Missense_Mutation p.C127F 0.13 deleterious(0) possibly_damaging(0.502) TCGA-HU-A4H0-01 1 29639111 29639111 G A PTPRU Silent p.A1050A 0.26 TCGA-HU-A4H0-01 1 3335280 3335280 A T PRDM16 Missense_Mutation p.R971W 0.21 deleterious(0) probably_damaging(0.995) TCGA-HU-A4H0-01 1 3409280 3409280 C T MEGF6 Missense_Mutation p.G1480E 0.33 tolerated(0.5) benign(0.005) TCGA-HU-A4H0-01 1 42047444 42047444 G A HIVEP3 Missense_Mutation p.R1009C 0.15 probably_damaging(0.998) TCGA-HU-A4H0-01 1 47610317 47610317 C T CYP4A22 Silent p.S331S 0.10 TCGA-HU-A4H0-01 1 50666696 50666696 G A ELAVL4 Missense_Mutation p.R333H 0.11 deleterious(0.02) probably_damaging(0.977) TCGA-HU-A4H0-01 1 59125642 59125642 G C MYSM1 3'UTR 0.33 TCGA-HU-A4H0-01 1 67098778 67098781 GTAA - SGIP1 Splice_Site p.X33_splice 0.14 TCGA-HU-A4H0-01 20 2463941 2463941 G A ZNF343 Nonsense_Mutation p.R556* 0.14 TCGA-HU-A4H0-01 20 32981613 32981613 G T ITCH 5'UTR 0.09 TCGA-HU-A4H0-01 20 34278407 34278407 G A NFS1 Silent p.C163C 0.11 TCGA-HU-A4H0-01 20 35857114 35857114 T C RPN2 Silent p.D487D 0.14 TCGA-HU-A4H0-01 20 36374931 36374931 A G CTNNBL1 Missense_Mutation p.M130V 0.15 tolerated(0.7) benign(0.003) TCGA-HU-A4H0-01 20 45354009 45354009 A G SLC2A10 Missense_Mutation p.I112V 0.18 tolerated(0.13) benign(0.032) TCGA-HU-A4H0-01 20 47989981 47989981 C T KCNB1 Missense_Mutation p.A706T 0.09 tolerated_low_confidence(0.8) benign(0.168) TCGA-HU-A4H0-01 20 57415346 57415346 G A RP4-806M20.3 5'Flank 0.22 TCGA-HU-A4H0-01 20 57568760 57568760 C T NELFCD Nonsense_Mutation p.R526* 0.12 TCGA-HU-A4H0-01 20 61990990 61990990 G A CHRNA4 Silent p.S46S 0.18 TCGA-HU-A4H0-01 20 62365998 62365998 G C ZGPAT Silent p.V291V 0.10 TCGA-HU-A4H0-01 20 62836422 62836422 G A MYT1 Missense_Mutation p.V41I 0.27 benign(0.016) TCGA-HU-A4H0-01 20 9402067 9402067 C G PLCB4 Missense_Mutation p.L748V 0.17 tolerated(0.09) probably_damaging(0.998) TCGA-HU-A4H0-01 21 43496205 43496205 G A UMODL1 Silent p.T56T 0.20 TCGA-HU-A4H0-01 22 17472957 17472957 T C GAB4 Missense_Mutation p.N95S 0.16 deleterious(0) possibly_damaging(0.874) TCGA-HU-A4H0-01 22 20754927 20754927 G A ZNF74 Silent p.S42S 0.21 TCGA-HU-A4H0-01 22 25124344 25124344 T C PIWIL3 Missense_Mutation p.K578E 0.18 tolerated(0.6) benign(0.25) TCGA-HU-A4H0-01 22 31533765 31533765 T C PLA2G3 Missense_Mutation p.M333V 0.09 tolerated(1) benign(0) TCGA-HU-A4H0-01 22 36708139 36708139 C A MYH9 Missense_Mutation p.Q561H 0.16 benign(0.067) TCGA-HU-A4H0-01 22 37967860 37967860 C - LGALS2 Frame_Shift_Del p.D29Mfs*4 0.12 TCGA-HU-A4H0-01 2 133542904 133542904 G T NCKAP5 Missense_Mutation p.Q494K 0.12 tolerated(1) benign(0.067) TCGA-HU-A4H0-01 2 158390423 158390423 A G ACVR1C 3'UTR 0.16 TCGA-HU-A4H0-01 2 169938324 169938324 G A DHRS9 Missense_Mutation p.R78H 0.11 tolerated(0.14) benign(0.011) TCGA-HU-A4H0-01 2 175252479 175252479 T C CIR1 Missense_Mutation p.Y34C 0.18 deleterious(0.02) unknown(0) TCGA-HU-A4H0-01 2 180008385 180008385 G A SESTD1 Silent p.Y261Y 0.11 TCGA-HU-A4H0-01 2 190535319 190535319 C T ASNSD1 Missense_Mutation p.P600L 0.29 deleterious(0) probably_damaging(0.996) TCGA-HU-A4H0-01 2 191864393 191864393 T C STAT1 Missense_Mutation p.Q167R 0.52 deleterious(0) probably_damaging(1) TCGA-HU-A4H0-01 2 206869610 206869610 T C INO80D Missense_Mutation p.M856V 0.20 tolerated_low_confidence(0.16) benign(0.001) TCGA-HU-A4H0-01 2 27592028 27592028 C T EIF2B4 Missense_Mutation p.R108Q 0.47 tolerated(0.3) benign(0.002) TCGA-HU-A4H0-01 2 29274846 29274846 C T FAM179A Missense_Mutation p.L983F 0.20 deleterious(0.03) probably_damaging(1) TCGA-HU-A4H0-01 2 46203658 46203658 A T PRKCE Missense_Mutation p.N168I 0.22 deleterious(0.01) possibly_damaging(0.582) TCGA-HU-A4H0-01 2 99790441 99790441 T G MITD1 Missense_Mutation p.K64Q 0.50 tolerated(0.08) benign(0.261) TCGA-HU-A4H0-01 3 120871364 120871364 A G STXBP5L Missense_Mutation p.D237G 0.11 deleterious(0) possibly_damaging(0.818) TCGA-HU-A4H0-01 3 1320162 1320162 C A CNTN6 Missense_Mutation p.L142I 0.19 deleterious(0.02) benign(0.44) TCGA-HU-A4H0-01 3 151073819 151073819 G A MED12L Missense_Mutation p.A850T 0.24 deleterious(0.02) benign(0.042) TCGA-HU-A4H0-01 3 178922370 178922370 A G PIK3CA Missense_Mutation p.N380S 0.14 tolerated(0.09) possibly_damaging(0.46) TCGA-HU-A4H0-01 3 192125831 192125831 G A FGF12 Missense_Mutation p.P61L 0.15 tolerated(0.23) benign(0.009) TCGA-HU-A4H0-01 3 195451990 195451990 G T MUC20 Silent p.L172L 0.12 TCGA-HU-A4H0-01 3 39107333 39107333 A G WDR48 Missense_Mutation p.H74R 0.12 deleterious(0) probably_damaging(1) TCGA-HU-A4H0-01 3 49405954 49405954 C T RHOA Missense_Mutation p.G62R 0.16 deleterious(0.03) probably_damaging(0.952) TCGA-HU-A4H0-01 3 56655490 56655490 C G FAM208A 3'Flank 0.29 TCGA-HU-A4H0-01 4 126372362 126372362 T A FAT4 Missense_Mutation p.D3397E 0.12 probably_damaging(0.997) TCGA-HU-A4H0-01 4 134073070 134073070 G A PCDH10 Missense_Mutation p.R592H 0.23 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H0-01 4 155219548 155219548 G T DCHS2 Missense_Mutation p.T1518N 0.16 deleterious(0.01) benign(0.381) TCGA-HU-A4H0-01 5 13708373 13708376 TCTG - DNAH5 Frame_Shift_Del p.D4398Efs*16 0.08 TCGA-HU-A4H0-01 5 139189211 139189211 G T PSD2 Missense_Mutation p.K62N 0.20 tolerated_low_confidence(0.07) benign(0.005) TCGA-HU-A4H0-01 5 140242770 140242770 G A AC005609.1 Missense_Mutation p.T69M 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.897) TCGA-HU-A4H0-01 5 140745174 140745174 A G PCDHGA5 Missense_Mutation p.D426G 0.12 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-HU-A4H0-01 5 140864960 140864960 C T PCDHGC4 Missense_Mutation p.H74Y 0.17 tolerated(1) benign(0.002) TCGA-HU-A4H0-01 5 145719209 145719209 G A POU4F3 Silent p.P73P 0.21 TCGA-HU-A4H0-01 5 145719700 145719700 C T POU4F3 Missense_Mutation p.S237L 0.12 deleterious(0) probably_damaging(1) TCGA-HU-A4H0-01 5 147012306 147012306 T A JAKMIP2 Missense_Mutation p.Q571H 0.12 deleterious(0.01) probably_damaging(0.984) TCGA-HU-A4H0-01 5 157073704 157073704 C T SOX30 Missense_Mutation p.R443H 0.21 tolerated(0.06) benign(0.02) TCGA-HU-A4H0-01 5 157078519 157078519 C T SOX30 Missense_Mutation p.E190K 0.17 tolerated_low_confidence(0.07) benign(0.007) TCGA-HU-A4H0-01 5 161569188 161569188 C T GABRG2 Missense_Mutation p.S303F 0.25 deleterious(0) possibly_damaging(0.474) TCGA-HU-A4H0-01 5 23526774 23526774 A G PRDM9 Missense_Mutation p.Y526C 0.18 tolerated(0.24) benign(0.077) TCGA-HU-A4H0-01 5 24593377 24593377 C T CDH10 Missense_Mutation p.V75I 0.12 tolerated(0.18) benign(0.025) TCGA-HU-A4H0-01 5 52780919 52780919 G A FST Missense_Mutation p.E272K 0.35 tolerated(0.15) possibly_damaging(0.561) TCGA-HU-A4H0-01 5 66478868 66478868 G A CD180 Silent p.G601G 0.26 TCGA-HU-A4H0-01 5 80369248 80369248 C T RASGRF2 Silent p.D288D 0.20 TCGA-HU-A4H0-01 5 88018547 88018547 G A MEF2C Silent p.D442D 0.16 TCGA-HU-A4H0-01 5 92923850 92923850 G A NR2F1 Missense_Mutation p.V231I 0.13 tolerated(0.13) benign(0.272) TCGA-HU-A4H0-01 6 108985663 108985663 G A FOXO3 Missense_Mutation p.A543T 0.14 tolerated(0.32) benign(0.016) TCGA-HU-A4H0-01 6 108985664 108985664 C T FOXO3 Missense_Mutation p.A543V 0.14 tolerated(0.42) benign(0.022) TCGA-HU-A4H0-01 6 111701366 111701366 C T REV3L Missense_Mutation p.G425R 0.20 deleterious(0) probably_damaging(0.951) TCGA-HU-A4H0-01 6 138734166 138734166 A G HEBP2 Missense_Mutation p.N190S 0.14 deleterious(0) probably_damaging(1) TCGA-HU-A4H0-01 6 168265408 168265408 G C MLLT4 Missense_Mutation p.E95Q 0.11 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H0-01 6 30882769 30882769 A G VARS2 Silent p.R82R 0.19 TCGA-HU-A4H0-01 6 31541465 31541465 C A LTA Missense_Mutation p.L205M 0.18 deleterious(0) probably_damaging(0.97) TCGA-HU-A4H0-01 6 31746776 31746776 G A VARS Missense_Mutation p.P1232S 0.08 tolerated(0.18) possibly_damaging(0.831) TCGA-HU-A4H0-01 6 45917087 45917087 C T CLIC5 Missense_Mutation p.G228S 0.12 deleterious(0) probably_damaging(0.996) TCGA-HU-A4H0-01 6 53516915 53516915 C G KLHL31 Silent p.A462A 0.30 TCGA-HU-A4H0-01 6 70037747 70037747 T G BAI3 Missense_Mutation p.F1001V 0.23 deleterious(0) probably_damaging(0.992) TCGA-HU-A4H0-01 6 74073551 74073551 G A KHDC3L Missense_Mutation p.E208K 0.09 tolerated(0.19) benign(0.005) TCGA-HU-A4H0-01 6 84269910 84269910 G A SNAP91 Silent p.G848G 0.20 TCGA-HU-A4H0-01 6 85472321 85472321 G A TBX18 Silent p.A146A 0.08 TCGA-HU-A4H0-01 6 99283682 99283682 T A POU3F2 Missense_Mutation p.F311L 0.14 deleterious(0) probably_damaging(0.982) TCGA-HU-A4H0-01 7 142460876 142460876 C G PRSS1 3'UTR 0.08 TCGA-HU-A4H0-01 7 149493689 149493689 C T SSPO RNA 0.17 TCGA-HU-A4H0-01 7 155559158 155559158 C T RBM33 Intron 0.30 TCGA-HU-A4H0-01 7 18625092 18625092 C T HDAC9 Nonsense_Mutation p.Q71* 0.30 TCGA-HU-A4H0-01 7 47947797 47947797 C T PKD1L1 Missense_Mutation p.E427K 0.15 tolerated(0.15) benign(0.004) TCGA-HU-A4H0-01 7 90042693 90042693 A G CLDN12 Missense_Mutation p.I235V 0.31 deleterious_low_confidence(0) benign(0.184) TCGA-HU-A4H0-01 7 95822490 95822490 T C SLC25A13 Missense_Mutation p.I158M 0.21 tolerated(0.1) benign(0.004) TCGA-HU-A4H0-01 8 100790949 100790949 A G VPS13B Missense_Mutation p.N2515S 0.13 tolerated(0.93) benign(0.292) TCGA-HU-A4H0-01 8 110464495 110464495 G A PKHD1L1 Missense_Mutation p.G2165S 0.09 deleterious(0.01) probably_damaging(0.956) TCGA-HU-A4H0-01 8 17137897 17137897 C A VPS37A Missense_Mutation p.T305K 0.20 tolerated(0.07) possibly_damaging(0.45) TCGA-HU-A4H0-01 8 21903764 21903764 G A FGF17 Missense_Mutation p.R71H 0.16 deleterious(0.03) benign(0.009) TCGA-HU-A4H0-01 8 41790128 41790128 G C KAT6A Missense_Mutation p.H1870Q 0.12 unknown(0) TCGA-HU-A4H0-01 8 56866415 56866415 G A LYN Missense_Mutation p.R221K 0.16 tolerated(1) benign(0) TCGA-HU-A4H0-01 8 87680379 87680379 G C CNGB3 Missense_Mutation p.P171A 0.18 tolerated(0.37) benign(0) TCGA-HU-A4H0-01 8 88885973 88885973 C T DCAF4L2 Missense_Mutation p.R76H 0.13 deleterious(0.01) benign(0.223) TCGA-HU-A4H0-01 8 89081740 89081740 G A MMP16 Intron 0.30 TCGA-HU-A4H0-01 9 107331805 107331805 A G OR13C8 Silent p.A119A 0.10 TCGA-HU-A4H0-01 X 107977572 107977572 T G IRS4 Missense_Mutation p.K668T 0.05 deleterious_low_confidence(0.01) unknown(0) TCGA-HU-A4H0-01 X 138708381 138708381 G A MCF2 Silent p.L280L 0.30 TCGA-HU-A4H0-01 X 144905049 144905049 A T SLITRK2 Missense_Mutation p.D369V 0.57 deleterious(0) benign(0.367) TCGA-HU-A4H0-01 X 148055009 148055009 A G AFF2 Silent p.K1092K 0.23 TCGA-HU-A4H0-01 X 32398721 32398721 G T DMD Missense_Mutation p.T1584K 0.28 possibly_damaging(0.888) TCGA-HU-A4H2-01 10 103919017 103919017 T C NOLC1 Silent p.S225S 0.20 TCGA-HU-A4H2-01 10 106918738 106918738 T C SORCS3 Missense_Mutation p.L573P 0.13 deleterious(0.02) possibly_damaging(0.905) TCGA-HU-A4H2-01 10 17061967 17061967 G A CUBN Missense_Mutation p.R1345W 0.14 deleterious(0.01) possibly_damaging(0.687) TCGA-HU-A4H2-01 10 20568723 20568723 G T PLXDC2 Missense_Mutation p.G522V 0.13 deleterious(0) probably_damaging(0.998) TCGA-HU-A4H2-01 10 44873107 44873107 C G CXCL12 3'UTR 0.25 TCGA-HU-A4H2-01 10 69366644 69366644 G A CTNNA3 Missense_Mutation p.T88M 0.19 tolerated(0.26) possibly_damaging(0.832) TCGA-HU-A4H2-01 10 73050696 73050696 C T UNC5B Missense_Mutation p.A375V 0.22 deleterious(0.04) probably_damaging(0.999) TCGA-HU-A4H2-01 10 73055697 73055697 A G UNC5B Missense_Mutation p.K769E 0.13 deleterious(0) benign(0.103) TCGA-HU-A4H2-01 10 82045320 82045320 A T MAT1A Missense_Mutation p.D39E 0.10 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H2-01 10 85968016 85968016 G A CDHR1 Silent p.P350P 0.53 TCGA-HU-A4H2-01 10 95719072 95719072 A T PIPSL RNA 0.17 TCGA-HU-A4H2-01 11 1011349 1011349 A G AP2A2 3'UTR 0.07 TCGA-HU-A4H2-01 11 108175539 108175539 G A ATM Silent p.S1878S 0.13 TCGA-HU-A4H2-01 11 114118040 114118040 A C ZBTB16 Missense_Mutation p.K582T 0.21 tolerated(0.24) possibly_damaging(0.833) TCGA-HU-A4H2-01 11 122817312 122817312 G A C11orf63 Missense_Mutation p.V581M 0.17 deleterious(0.01) benign(0.13) TCGA-HU-A4H2-01 11 19077106 19077106 C T MRGPRX2 Missense_Mutation p.V282M 0.14 tolerated(0.05) possibly_damaging(0.811) TCGA-HU-A4H2-01 11 31349783 31349783 C G DCDC1 Missense_Mutation p.Q15H 0.37 tolerated_low_confidence(0.14) benign(0.01) TCGA-HU-A4H2-01 11 34991726 34991726 T A PDHX Missense_Mutation p.V286D 0.24 deleterious(0) probably_damaging(0.988) TCGA-HU-A4H2-01 11 36615566 36615566 C T RAG2 Silent p.K51K 0.17 TCGA-HU-A4H2-01 11 46911003 46911003 G A LRP4 Missense_Mutation p.P725L 0.18 deleterious(0) probably_damaging(0.997) TCGA-HU-A4H2-01 11 5068262 5068262 C A OR52J3 Silent p.P169P 0.06 TCGA-HU-A4H2-01 11 55110693 55110693 A T OR4A16 Missense_Mutation p.N6I 0.09 deleterious_low_confidence(0) benign(0.347) TCGA-HU-A4H2-01 11 59132682 59132682 C T OR5AN1 Missense_Mutation p.L251F 0.16 deleterious(0.03) benign(0.424) TCGA-HU-A4H2-01 11 66188802 66188802 G A NPAS4 Missense_Mutation p.R51H 0.20 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H2-01 11 6653349 6653349 G A DCHS1 Nonsense_Mutation p.R1132* 0.21 TCGA-HU-A4H2-01 11 66888764 66888764 G C KDM2A 5'UTR 0.27 TCGA-HU-A4H2-01 11 68216312 68216312 C T LRP5 Missense_Mutation p.T1541M 0.12 deleterious(0) probably_damaging(1) TCGA-HU-A4H2-01 11 89431659 89431659 T G FOLH1B RNA 0.18 TCGA-HU-A4H2-01 12 110957714 110957714 C T RAD9B Nonsense_Mutation p.R295* 0.15 TCGA-HU-A4H2-01 12 11338850 11338850 C T TAS2R42 Missense_Mutation p.A232T 0.21 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H2-01 12 113835138 113835138 G C SDS Missense_Mutation p.A162G 0.28 deleterious(0.02) probably_damaging(0.913) TCGA-HU-A4H2-01 12 21325668 21325668 C T SLCO1B1 Missense_Mutation p.R57W 0.26 deleterious(0) probably_damaging(1) TCGA-HU-A4H2-01 12 31944585 31944585 A G H3F3C 3'UTR 0.32 TCGA-HU-A4H2-01 12 49742618 49742618 G C DNAJC22 5'UTR 0.29 TCGA-HU-A4H2-01 12 56120536 56120536 T C CD63 Missense_Mutation p.N125S 0.28 tolerated(0.14) benign(0.014) TCGA-HU-A4H2-01 12 56956256 56956256 C A RBMS2 Missense_Mutation p.P41H 0.32 tolerated(0.11) benign(0.437) TCGA-HU-A4H2-01 12 57579489 57579489 C T LRP1 Silent p.H2213H 0.16 TCGA-HU-A4H2-01 12 653598 653598 C A B4GALNT3 Missense_Mutation p.H149N 0.25 deleterious(0.04) probably_damaging(0.938) TCGA-HU-A4H2-01 12 71002847 71002847 A G PTPRB Splice_Site p.X327_splice 0.16 TCGA-HU-A4H2-01 12 98926907 98926907 G A TMPO Missense_Mutation p.S291N 0.11 deleterious_low_confidence(0) benign(0.005) TCGA-HU-A4H2-01 13 32811731 32811731 G C FRY Missense_Mutation p.C2009S 0.26 tolerated(0.81) benign(0.005) TCGA-HU-A4H2-01 13 36700036 36700036 C T DCLK1 Missense_Mutation p.R80Q 0.19 deleterious(0) unknown(0) TCGA-HU-A4H2-01 13 36767772 36767772 C A SOHLH2 Missense_Mutation p.C216F 0.13 tolerated(0.39) benign(0.034) TCGA-HU-A4H2-01 13 58209029 58209029 G A PCDH17 Missense_Mutation p.M783I 0.17 deleterious(0.03) benign(0.119) TCGA-HU-A4H2-01 13 61985660 61985660 T A PCDH20 Nonsense_Mutation p.R858* 0.35 TCGA-HU-A4H2-01 14 106471648 106471648 C T IGHV1-3 Missense_Mutation p.A12T 0.11 tolerated(0.08) benign(0.132) TCGA-HU-A4H2-01 14 19553749 19553749 G A POTEG Silent p.G111G 0.07 TCGA-HU-A4H2-01 14 23894051 23894051 C T MYH7 Missense_Mutation p.R869H 0.24 deleterious(0.01) probably_damaging(0.98) TCGA-HU-A4H2-01 14 30103745 30103745 G A PRKD1 Missense_Mutation p.P398L 0.18 tolerated(0.05) benign(0.046) TCGA-HU-A4H2-01 14 47120431 47120431 T G RPL10L Missense_Mutation p.K170T 0.16 deleterious(0.03) benign(0.103) TCGA-HU-A4H2-01 14 76965244 76965244 C T ESRRB Intron 0.33 TCGA-HU-A4H2-01 14 95921749 95921749 C T SYNE3 Missense_Mutation p.E368K 0.16 deleterious(0.01) benign(0.109) TCGA-HU-A4H2-01 15 20496613 20496613 A C CHEK2P2 RNA 0.06 TCGA-HU-A4H2-01 15 50211119 50211119 T G ATP8B4 Missense_Mutation p.K651T 0.21 deleterious(0) possibly_damaging(0.87) TCGA-HU-A4H2-01 15 64966687 64966687 T C ZNF609 Missense_Mutation p.L545P 0.26 tolerated(0.17) benign(0) TCGA-HU-A4H2-01 15 65622985 65622985 G T IGDCC3 Silent p.G552G 0.24 TCGA-HU-A4H2-01 15 80465483 80465483 G T FAH Missense_Mutation p.K278N 0.36 tolerated(0.34) benign(0.002) TCGA-HU-A4H2-01 16 19020541 19020541 T C TMC7 Missense_Mutation p.F39L 0.13 tolerated(0.21) benign(0.009) TCGA-HU-A4H2-01 16 27232192 27232192 G A KDM8 3'Flank 0.21 TCGA-HU-A4H2-01 16 28943926 28943926 G A CD19 Silent p.E116E 0.24 TCGA-HU-A4H2-01 16 334907 334907 C T PDIA2 Silent p.F190F 0.27 TCGA-HU-A4H2-01 16 67286649 67286649 A C SLC9A5 Missense_Mutation p.N131T 0.16 deleterious(0.04) benign(0.146) TCGA-HU-A4H2-01 16 86601967 86601967 C T FOXC2 Silent p.A342A 0.47 TCGA-HU-A4H2-01 17 15965113 15965113 G A NCOR1 Missense_Mutation p.A1828V 0.31 probably_damaging(0.993) TCGA-HU-A4H2-01 17 37188186 37188186 C T CTD-2206N4.2 5'Flank 0.21 TCGA-HU-A4H2-01 17 38935958 38935958 G A KRT27 Silent p.N280N 0.16 TCGA-HU-A4H2-01 17 42476351 42476351 G A GPATCH8 Missense_Mutation p.R1032C 0.26 deleterious(0.02) unknown(0) TCGA-HU-A4H2-01 17 45892625 45892625 C T OSBPL7 Missense_Mutation p.D405N 0.24 deleterious(0) probably_damaging(0.998) TCGA-HU-A4H2-01 17 45915694 45915694 C T SCRN2 Missense_Mutation p.R354H 0.24 deleterious(0) probably_damaging(1) TCGA-HU-A4H2-01 17 49091614 49091614 C T SPAG9 Missense_Mutation p.D398N 0.19 deleterious(0) possibly_damaging(0.677) TCGA-HU-A4H2-01 17 62542381 62542381 C T SMURF2 Missense_Mutation p.C716Y 0.12 deleterious(0) probably_damaging(0.993) TCGA-HU-A4H2-01 17 70120487 70120488 - ACT SOX9 In_Frame_Ins p.H497_W498insY 0.31 TCGA-HU-A4H2-01 17 7578453 7578477 GGCGCGGACGCGGGTGCCGGGCGGG - TP53 Frame_Shift_Del p.P152Wfs*10 0.49 TCGA-HU-A4H2-01 18 66378633 66378633 C T TMX3 Missense_Mutation p.E37K 0.31 tolerated(0.11) benign(0.347) TCGA-HU-A4H2-01 18 72228193 72228193 C T CNDP1 Nonsense_Mutation p.Q136* 0.38 TCGA-HU-A4H2-01 19 10394179 10394179 G A ICAM1 Silent p.L118L 0.13 TCGA-HU-A4H2-01 19 22836144 22836144 C A ZNF492 5'UTR 0.14 TCGA-HU-A4H2-01 19 3834822 3834822 G T ZFR2 Silent p.G71G 0.22 TCGA-HU-A4H2-01 19 38795554 38795555 - AAGAAGGAGAAGGGC C19orf33 In_Frame_Ins p.E92_K93insGEGQE 0.10 TCGA-HU-A4H2-01 19 38937121 38937121 C T RYR1 Missense_Mutation p.T214M 0.40 probably_damaging(0.97) TCGA-HU-A4H2-01 19 44590346 44590346 A C ZNF284 Missense_Mutation p.S239R 0.09 tolerated(0.09) benign(0.379) TCGA-HU-A4H2-01 19 53384360 53384360 C T ZNF320 Missense_Mutation p.R340H 0.60 tolerated(0.5) benign(0.02) TCGA-HU-A4H2-01 19 54198493 54198493 G A MIR519B RNA 0.04 TCGA-HU-A4H2-01 19 54395881 54395881 G C PRKCG Missense_Mutation p.A269P 0.11 tolerated(0.22) benign(0.001) TCGA-HU-A4H2-01 19 55708067 55708067 C T PTPRH Missense_Mutation p.E694K 0.05 possibly_damaging(0.691) TCGA-HU-A4H2-01 19 58452346 58452346 T A ZNF256 Missense_Mutation p.K610N 0.06 deleterious(0) probably_damaging(0.997) TCGA-HU-A4H2-01 19 58944593 58944593 G A ZNF132 3'UTR 0.09 TCGA-HU-A4H2-01 19 8563996 8563996 C G PRAM1 Missense_Mutation p.Q232H 0.21 deleterious(0) probably_damaging(0.965) TCGA-HU-A4H2-01 1 104160230 104160230 G T AMY2A Missense_Mutation p.Q56H 0.11 deleterious(0) benign(0.177) TCGA-HU-A4H2-01 1 108115887 108115887 C T VAV3 3'UTR 0.17 TCGA-HU-A4H2-01 1 11024242 11024242 C T C1orf127 Silent p.P153P 0.22 TCGA-HU-A4H2-01 1 112269837 112269837 C T FAM212B Missense_Mutation p.R216H 0.15 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H2-01 1 150532686 150532686 C T ADAMTSL4 3'UTR 0.17 TCGA-HU-A4H2-01 1 152082181 152082181 C T TCHH Missense_Mutation p.R1171H 0.12 unknown(0) TCGA-HU-A4H2-01 1 152659375 152659375 A G LCE2B Missense_Mutation p.K19R 0.15 tolerated_low_confidence(0.16) unknown(0) TCGA-HU-A4H2-01 1 152882720 152882720 A T IVL Missense_Mutation p.K149N 0.14 tolerated_low_confidence(0.12) unknown(0) TCGA-HU-A4H2-01 1 156812986 156812986 A T INSRR Missense_Mutation p.I979N 0.18 deleterious(0) probably_damaging(1) TCGA-HU-A4H2-01 1 157771938 157771938 T C FCRL1 Missense_Mutation p.Q218R 0.11 tolerated(0.07) benign(0.363) TCGA-HU-A4H2-01 1 158262135 158262135 A T CD1C Missense_Mutation p.K197M 0.10 deleterious(0) possibly_damaging(0.85) TCGA-HU-A4H2-01 1 184701990 184701990 C T EDEM3 Missense_Mutation p.S198N 0.33 deleterious(0) probably_damaging(0.982) TCGA-HU-A4H2-01 1 207103709 207103709 G A PIGR Missense_Mutation p.S750F 0.13 deleterious(0) possibly_damaging(0.907) TCGA-HU-A4H2-01 1 207300153 207300153 C T C4BPA Nonsense_Mutation p.Q268* 0.17 TCGA-HU-A4H2-01 1 212538481 212538481 A G TMEM206 3'UTR 0.32 TCGA-HU-A4H2-01 1 216595587 216595587 G T USH2A Missense_Mutation p.T31N 0.15 benign(0.002) TCGA-HU-A4H2-01 1 229568303 229568303 C T ACTA1 Missense_Mutation p.G152S 0.17 deleterious_low_confidence(0.02) probably_damaging(0.99) TCGA-HU-A4H2-01 1 237713899 237713899 G A RYR2 Missense_Mutation p.R1041Q 0.19 probably_damaging(0.948) TCGA-HU-A4H2-01 1 27239982 27239982 T C NR0B2 Silent p.Q150Q 0.14 TCGA-HU-A4H2-01 1 27278473 27278473 T G C1orf172 Silent p.G133G 0.17 TCGA-HU-A4H2-01 1 42048532 42048532 T G HIVEP3 Missense_Mutation p.N646T 0.21 benign(0.002) TCGA-HU-A4H2-01 1 42048615 42048615 C T HIVEP3 Silent p.S618S 0.32 TCGA-HU-A4H2-01 1 52811788 52811788 T C ZFYVE9 Silent p.D1391D 0.29 TCGA-HU-A4H2-01 1 60073568 60073568 G A FGGY Missense_Mutation p.V333I 0.22 deleterious(0.02) benign(0.013) TCGA-HU-A4H2-01 1 74957907 74957907 G A TNNI3K Missense_Mutation p.E871K 0.23 deleterious_low_confidence(0.03) probably_damaging(0.991) TCGA-HU-A4H2-01 20 18414372 18414372 A G DZANK1 Missense_Mutation p.M262T 0.17 tolerated(0.13) benign(0.027) TCGA-HU-A4H2-01 20 22564868 22564868 C A FOXA2 Nonsense_Mutation p.E17* 0.24 TCGA-HU-A4H2-01 20 2604963 2604963 G A TMC2 Missense_Mutation p.D743N 0.21 deleterious(0.01) benign(0.165) TCGA-HU-A4H2-01 20 31890858 31890858 G A BPIFB1 Missense_Mutation p.R373H 0.13 tolerated(0.17) benign(0.14) TCGA-HU-A4H2-01 20 42196350 42196350 G A SGK2 Silent p.G104G 0.16 TCGA-HU-A4H2-01 20 42788598 42788598 C T JPH2 Missense_Mutation p.A277T 0.15 tolerated(0.42) benign(0.016) TCGA-HU-A4H2-01 20 44442035 44442035 C G UBE2C Intron 0.12 TCGA-HU-A4H2-01 20 44681717 44681717 C T SLC12A5 Silent p.H856H 0.36 TCGA-HU-A4H2-01 20 53208299 53208299 G A DOK5 Missense_Mutation p.R185Q 0.17 deleterious(0.03) probably_damaging(0.992) TCGA-HU-A4H2-01 20 54824725 54824725 T A MC3R Missense_Mutation p.C276S 0.13 deleterious(0.01) probably_damaging(0.96) TCGA-HU-A4H2-01 20 9546762 9546762 G T PAK7 Silent p.S420S 0.25 TCGA-HU-A4H2-01 21 27840781 27840781 A G CYYR1 3'UTR 0.17 TCGA-HU-A4H2-01 22 22385795 22385795 G A IGLV4-69 Missense_Mutation p.R95H 0.33 tolerated(0.38) benign(0.109) TCGA-HU-A4H2-01 22 36960645 36960645 C T CACNG2 Missense_Mutation p.R242H 0.14 tolerated(0.18) benign(0.001) TCGA-HU-A4H2-01 2 105959540 105959540 A G C2orf49 Missense_Mutation p.N168D 0.14 tolerated(0.1) benign(0.004) TCGA-HU-A4H2-01 2 133175221 133175221 C T GPR39 Silent p.P202P 0.14 TCGA-HU-A4H2-01 2 155102467 155102467 A C GALNT13 Silent p.R277R 0.21 TCGA-HU-A4H2-01 2 165947600 165947600 T C SCN3A Missense_Mutation p.D1688G 0.44 deleterious(0) probably_damaging(0.958) TCGA-HU-A4H2-01 2 166172072 166172072 A C SCN2A Missense_Mutation p.K492T 0.13 tolerated(0.42) probably_damaging(0.999) TCGA-HU-A4H2-01 2 168115033 168115033 T G XIRP2 3'UTR 0.08 TCGA-HU-A4H2-01 2 179594952 179594952 A G TTN Missense_Mutation p.S6059P 0.19 TCGA-HU-A4H2-01 2 179611639 179611639 C T TTN Intron 0.08 TCGA-HU-A4H2-01 2 186672103 186672103 A C FSIP2 Missense_Mutation p.I6113L 0.34 benign(0.22) TCGA-HU-A4H2-01 2 217724381 217724381 G A TNP1 3'UTR 0.21 TCGA-HU-A4H2-01 2 219509670 219509670 C A ZNF142 Silent p.R523R 0.20 TCGA-HU-A4H2-01 2 24005831 24005831 T C ATAD2B Missense_Mutation p.K1014R 0.22 tolerated(0.5) possibly_damaging(0.721) TCGA-HU-A4H2-01 2 51254789 51254789 G A NRXN1 Missense_Mutation p.P208L 0.25 tolerated(0.36) benign(0.017) TCGA-HU-A4H2-01 2 77746756 77746756 T C LRRTM4 Missense_Mutation p.Q80R 0.13 deleterious(0) probably_damaging(0.996) TCGA-HU-A4H2-01 3 120973864 120973864 T A STXBP5L Missense_Mutation p.W522R 0.20 deleterious(0) possibly_damaging(0.646) TCGA-HU-A4H2-01 3 12182165 12182165 G A SYN2 RNA 0.29 TCGA-HU-A4H2-01 3 126260803 126260803 C T CHST13 Silent p.R136R 0.21 TCGA-HU-A4H2-01 3 127983559 127983559 A G EEFSEC Missense_Mutation p.M241V 0.35 deleterious(0.05) benign(0.1) TCGA-HU-A4H2-01 3 129180108 129180108 A G IFT122 Missense_Mutation p.I155V 0.27 tolerated(1) benign(0.002) TCGA-HU-A4H2-01 3 133339033 133339033 G A TOPBP1 Missense_Mutation p.R1113C 0.33 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H2-01 3 133372361 133372361 C G TOPBP1 Missense_Mutation p.K250N 0.13 deleterious(0) probably_damaging(1) TCGA-HU-A4H2-01 3 164764797 164764797 A G SI Silent p.A573A 0.27 TCGA-HU-A4H2-01 3 172642045 172642045 T C SPATA16 Missense_Mutation p.K431E 0.17 tolerated(0.05) possibly_damaging(0.486) TCGA-HU-A4H2-01 3 183703391 183703391 C T ABCC5 Intron 0.31 TCGA-HU-A4H2-01 3 193081105 193081105 C T ATP13A5 Missense_Mutation p.V102I 0.31 tolerated(0.73) benign(0.003) TCGA-HU-A4H2-01 3 38950622 38950622 A C SCN11A Missense_Mutation p.F389V 0.15 deleterious(0) probably_damaging(1) TCGA-HU-A4H2-01 3 50405113 50405113 C T CACNA2D2 Missense_Mutation p.A760T 0.09 deleterious(0) possibly_damaging(0.79) TCGA-HU-A4H2-01 3 57494188 57494188 G A DNAH12 Missense_Mutation p.H208Y 0.31 deleterious(0) possibly_damaging(0.511) TCGA-HU-A4H2-01 3 96533679 96533679 C A EPHA6 Missense_Mutation p.P71H 0.14 tolerated_low_confidence(0.11) probably_damaging(0.95) TCGA-HU-A4H2-01 4 100237383 100237383 G A ADH1B Silent p.C112C 0.15 TCGA-HU-A4H2-01 4 126397386 126397386 A C FAT4 Missense_Mutation p.S4090R 0.16 probably_damaging(0.996) TCGA-HU-A4H2-01 4 30723907 30723907 G A PCDH7 Missense_Mutation p.R288H 0.16 deleterious(0.03) probably_damaging(0.921) TCGA-HU-A4H2-01 4 38698837 38698837 C T KLF3 Missense_Mutation p.R331C 0.49 deleterious(0) probably_damaging(1) TCGA-HU-A4H2-01 4 62452949 62452949 C T LPHN3 Silent p.F20F 0.29 TCGA-HU-A4H2-01 4 69337188 69337188 C T TMPRSS11E Missense_Mutation p.H113Y 0.05 tolerated(0.09) benign(0.01) TCGA-HU-A4H2-01 4 69817169 69817169 A C UGT2A3 Missense_Mutation p.W104G 0.20 deleterious(0) probably_damaging(0.992) TCGA-HU-A4H2-01 4 80329230 80329230 T G GK2 Missense_Mutation p.E42A 0.23 deleterious(0.01) possibly_damaging(0.889) TCGA-HU-A4H2-01 5 100192077 100192077 T C ST8SIA4 Missense_Mutation p.E176G 0.19 benign(0.032) TCGA-HU-A4H2-01 5 13766258 13766258 G A DNAH5 Missense_Mutation p.R3310C 0.16 benign(0.133) TCGA-HU-A4H2-01 5 13841082 13841082 G A DNAH5 Missense_Mutation p.T1881M 0.10 possibly_damaging(0.791) TCGA-HU-A4H2-01 5 140236968 140236968 C T PCDHA10 Silent p.A445A 0.23 TCGA-HU-A4H2-01 5 140242817 140242817 G A AC005609.1 Silent p.R53R 0.24 TCGA-HU-A4H2-01 5 140559623 140559623 C A PCDHB8 Missense_Mutation p.P670T 0.22 deleterious_low_confidence(0) possibly_damaging(0.447) TCGA-HU-A4H2-01 5 140604640 140604640 C T PCDHB14 Silent p.Y521Y 0.21 TCGA-HU-A4H2-01 5 156482248 156482248 C T HAVCR1 Missense_Mutation p.D115N 0.09 deleterious(0) possibly_damaging(0.756) TCGA-HU-A4H2-01 5 161520906 161520906 A C GABRG2 Missense_Mutation p.K60N 0.25 deleterious(0) probably_damaging(0.948) TCGA-HU-A4H2-01 5 169931586 169931586 G A KCNIP1 Missense_Mutation p.V4I 0.34 tolerated_low_confidence(0.45) benign(0.002) TCGA-HU-A4H2-01 5 176938778 176938778 G A DDX41 3'UTR 0.05 TCGA-HU-A4H2-01 5 63871703 63871703 G T RGS7BP Silent p.L145L 0.17 TCGA-HU-A4H2-01 5 95278738 95278738 G A ELL2 Nonsense_Mutation p.R55* 0.37 TCGA-HU-A4H2-01 5 99871318 99871318 G T FAM174A Silent p.G28G 0.19 TCGA-HU-A4H2-01 6 116914364 116914364 T C RWDD1 3'UTR 0.25 TCGA-HU-A4H2-01 6 119345138 119345138 C T FAM184A Missense_Mutation p.E334K 0.14 deleterious(0.05) possibly_damaging(0.713) TCGA-HU-A4H2-01 6 146720482 146720482 C A GRM1 Nonsense_Mutation p.Y769* 0.21 TCGA-HU-A4H2-01 6 154414626 154414626 C A OPRM1 Intron 0.16 TCGA-HU-A4H2-01 6 158487596 158487596 T C SYNJ2 Missense_Mutation p.V549A 0.20 tolerated(0.68) benign(0.005) TCGA-HU-A4H2-01 6 30688274 30688274 A T TUBB 5'UTR 0.32 TCGA-HU-A4H2-01 6 31852190 31852190 C T EHMT2 Missense_Mutation p.R917H 0.22 tolerated(0.09) benign(0.012) TCGA-HU-A4H2-01 6 33231568 33231568 A G VPS52 Missense_Mutation p.M570T 0.25 deleterious(0.05) benign(0.444) TCGA-HU-A4H2-01 6 35773558 35773558 C T LHFPL5 Silent p.S37S 0.20 TCGA-HU-A4H2-01 6 54806758 54806758 C T FAM83B Nonsense_Mutation p.R997* 0.34 TCGA-HU-A4H2-01 6 55266585 55266585 C A GFRAL Intron 0.16 TCGA-HU-A4H2-01 6 57075034 57075034 G A RAB23 Nonsense_Mutation p.R49* 0.18 TCGA-HU-A4H2-01 6 97414900 97414900 C T KLHL32 5'UTR 0.29 TCGA-HU-A4H2-01 7 100364791 100364791 G A ZAN Missense_Mutation p.G1591R 0.10 unknown(0) TCGA-HU-A4H2-01 7 100608712 100608712 C A MUC3A Intron 0.24 TCGA-HU-A4H2-01 7 135614721 135614721 C T MTPN Missense_Mutation p.A104T 0.21 tolerated(0.34) benign(0) TCGA-HU-A4H2-01 7 141955044 141955044 A T PRSS58 Missense_Mutation p.H89Q 0.35 deleterious(0.05) benign(0.05) TCGA-HU-A4H2-01 7 143929571 143929571 G A OR2A42 Silent p.Y122Y 0.18 TCGA-HU-A4H2-01 7 146997356 146997356 A C CNTNAP2 Missense_Mutation p.K491T 0.21 tolerated(0.74) benign(0.021) TCGA-HU-A4H2-01 7 150027913 150027913 C T ZBED6CL Silent p.S140S 0.26 TCGA-HU-A4H2-01 7 87329821 87329821 G T RUNDC3B Missense_Mutation p.C125F 0.13 deleterious(0) probably_damaging(0.991) TCGA-HU-A4H2-01 7 88956701 88956701 C A ZNF804B Missense_Mutation p.A98D 0.11 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H2-01 7 88965059 88965059 C A ZNF804B Silent p.T921T 0.10 TCGA-HU-A4H2-01 7 92761613 92761613 G T SAMD9L Silent p.S1224S 0.12 TCGA-HU-A4H2-01 7 93623678 93623678 G T BET1 Missense_Mutation p.T74K 0.39 deleterious(0.01) possibly_damaging(0.805) TCGA-HU-A4H2-01 8 105509670 105509670 T G LRP12 Missense_Mutation p.Q370H 0.19 tolerated(0.21) probably_damaging(0.99) TCGA-HU-A4H2-01 8 110587148 110587148 C T SYBU Missense_Mutation p.R660H 0.18 tolerated(0.77) benign(0.003) TCGA-HU-A4H2-01 8 113293418 113293418 A T CSMD3 Missense_Mutation p.L3165I 0.24 tolerated(0.19) benign(0.026) TCGA-HU-A4H2-01 8 113649169 113649169 A C CSMD3 Missense_Mutation p.F1198V 0.23 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H2-01 8 132002740 132002740 A G ADCY8 Missense_Mutation p.F337L 0.19 deleterious(0.01) possibly_damaging(0.673) TCGA-HU-A4H2-01 8 141711019 141711019 G A PTK2 Missense_Mutation p.R824C 0.16 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H2-01 8 21996454 21996454 G A REEP4 Missense_Mutation p.R180W 0.21 deleterious(0.01) possibly_damaging(0.453) TCGA-HU-A4H2-01 8 29963316 29963316 A T LEPROTL1 Intron 0.29 TCGA-HU-A4H2-01 8 38271510 38271510 C T FGFR1 Missense_Mutation p.V771M 0.19 deleterious(0.04) benign(0.224) TCGA-HU-A4H2-01 8 43155718 43155718 T - RNU6-104P 5'Flank 0.15 TCGA-HU-A4H2-01 8 72966069 72966069 C T TRPA1 Silent p.A521A 0.20 TCGA-HU-A4H2-01 8 97157137 97157137 C T GDF6 Missense_Mutation p.R341H 0.13 deleterious(0) probably_damaging(0.973) TCGA-HU-A4H2-01 9 113196685 113196685 G T SVEP1 Missense_Mutation p.L1664M 0.23 benign(0.038) TCGA-HU-A4H2-01 9 115652545 115652545 C T SLC46A2 Silent p.A139A 0.25 TCGA-HU-A4H2-01 9 120176865 120176865 G T ASTN2 Missense_Mutation p.R118S 0.26 deleterious_low_confidence(0) unknown(0) TCGA-HU-A4H2-01 9 140911608 140911608 G C CACNA1B Intron 0.23 TCGA-HU-A4H2-01 9 20988425 20988425 C T FOCAD Silent p.D1667D 0.31 TCGA-HU-A4H2-01 9 27566905 27566905 G C C9orf72 Missense_Mutation p.L72V 0.07 tolerated(0.07) probably_damaging(0.996) TCGA-HU-A4H2-01 9 77411801 77411801 T A TRPM6 Silent p.I749I 0.16 TCGA-HU-A4H2-01 9 77427319 77427319 C A TRPM6 Missense_Mutation p.A447S 0.19 deleterious(0.03) probably_damaging(0.999) TCGA-HU-A4H2-01 9 84531732 84531732 T A SPATA31D5P RNA 0.20 TCGA-HU-A4H2-01 X 107838773 107838773 A C COL4A5 Silent p.G486G 0.26 TCGA-HU-A4H2-01 X 125299816 125299816 G A DCAF12L2 Missense_Mutation p.A31V 0.12 tolerated(0.23) benign(0.003) TCGA-HU-A4H2-01 X 130219891 130219891 C T ARHGAP36 Missense_Mutation p.P370L 0.26 tolerated(0.16) benign(0.007) TCGA-HU-A4H2-01 X 130419048 130419048 G C IGSF1 Intron 0.32 TCGA-HU-A4H2-01 X 153208373 153208373 C T RENBP Silent p.E207E 0.22 TCGA-HU-A4H2-01 X 25033778 25033778 G A ARX Missense_Mutation p.S26F 0.32 deleterious(0) unknown(0) TCGA-HU-A4H2-01 X 77158139 77158139 G T COX7B Splice_Site p.X14_splice 0.27 TCGA-HU-A4H2-01 X 91873460 91873460 G A PCDH11X Missense_Mutation p.V1189M 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.577) TCGA-HU-A4H3-01 10 102265915 102265915 A G SEC31B Missense_Mutation p.V309A 0.42 deleterious(0) possibly_damaging(0.566) TCGA-HU-A4H3-01 10 103360978 103360978 G A DPCD Missense_Mutation p.D97N 0.32 tolerated(0.08) benign(0.263) TCGA-HU-A4H3-01 10 104176203 104176203 C - PSD Frame_Shift_Del p.G198Afs*19 0.21 TCGA-HU-A4H3-01 10 104181683 104181683 T C FBXL15 Missense_Mutation p.L116P 0.16 deleterious(0) benign(0.005) TCGA-HU-A4H3-01 10 105138238 105138238 T C TAF5 Silent p.S348S 0.13 TCGA-HU-A4H3-01 10 105953694 105953694 C T WDR96 Missense_Mutation p.V458I 0.43 tolerated(0.29) benign(0.013) TCGA-HU-A4H3-01 10 108923879 108923879 C A SORCS1 Missense_Mutation p.G136W 0.18 deleterious(0.02) possibly_damaging(0.698) TCGA-HU-A4H3-01 10 111893350 111893351 AA - ADD3 Frame_Shift_Del p.K701Gfs*4 0.28 TCGA-HU-A4H3-01 10 116603660 116603660 C T FAM160B1 Missense_Mutation p.P326L 0.24 deleterious(0) probably_damaging(0.969) TCGA-HU-A4H3-01 10 118440716 118440716 A C HSPA12A Missense_Mutation p.V325G 0.30 deleterious(0.01) possibly_damaging(0.887) TCGA-HU-A4H3-01 10 125506321 125506321 G A CPXM2 Missense_Mutation p.R744W 0.25 deleterious(0.03) unknown(0) TCGA-HU-A4H3-01 10 127426891 127426891 A - EDRF1 Frame_Shift_Del p.E622Kfs*15 0.16 TCGA-HU-A4H3-01 10 129847931 129847931 G A PTPRE Splice_Site p.X140_splice 0.46 TCGA-HU-A4H3-01 10 13639491 13639491 G A PRPF18 Missense_Mutation p.A34T 0.11 tolerated(0.56) benign(0.003) TCGA-HU-A4H3-01 10 14816397 14816397 G A FAM107B Missense_Mutation p.A89V 0.35 deleterious_low_confidence(0.04) benign(0.211) TCGA-HU-A4H3-01 10 17201173 17201173 T C TRDMT1 Missense_Mutation p.E172G 0.28 tolerated(0.22) benign(0.159) TCGA-HU-A4H3-01 10 25273749 25273749 T C ENKUR Missense_Mutation p.K227R 0.35 tolerated(0.07) possibly_damaging(0.764) TCGA-HU-A4H3-01 10 28233746 28233746 T C ARMC4 Missense_Mutation p.K511R 0.29 tolerated(0.13) benign(0.167) TCGA-HU-A4H3-01 10 29599965 29599965 A G LYZL1 Missense_Mutation p.K188E 0.33 deleterious(0.01) benign(0.219) TCGA-HU-A4H3-01 10 29747513 29747513 C T SVIL Silent p.T2136T 0.42 TCGA-HU-A4H3-01 10 29813557 29813557 G A SVIL Silent p.S810S 0.38 TCGA-HU-A4H3-01 10 31133959 31133959 T - ZNF438 Frame_Shift_Del p.K806Nfs*6 0.27 TCGA-HU-A4H3-01 10 31610399 31610399 C T ZEB1 Intron 0.42 TCGA-HU-A4H3-01 10 31809766 31809766 C T ZEB1 Silent p.N502N 0.36 TCGA-HU-A4H3-01 10 31815922 31815922 C T ZEB1 Silent p.D1036D 0.33 TCGA-HU-A4H3-01 10 34626308 34626308 C A PARD3 Nonsense_Mutation p.G822* 0.37 TCGA-HU-A4H3-01 10 3824017 3824017 G A KLF6 Silent p.C164C 0.14 TCGA-HU-A4H3-01 10 38353053 38353053 C T ZNF33A 3'Flank 0.39 TCGA-HU-A4H3-01 10 48438501 48438501 G A GDF10 Silent p.S70S 0.23 TCGA-HU-A4H3-01 10 51465445 51465445 G A AGAP7 Silent p.S337S 0.17 TCGA-HU-A4H3-01 10 52067830 52067830 G A SGMS1 Missense_Mutation p.A325V 0.40 deleterious(0) probably_damaging(0.969) TCGA-HU-A4H3-01 10 5769037 5769037 G A FAM208B Silent p.K146K 0.30 TCGA-HU-A4H3-01 10 64159485 64159485 C T ZNF365 Intron 0.32 TCGA-HU-A4H3-01 10 64974641 64974641 T - JMJD1C Frame_Shift_Del p.N429Ifs*32 0.24 TCGA-HU-A4H3-01 10 70105413 70105413 T C RUFY2 3'UTR 0.48 TCGA-HU-A4H3-01 10 70482243 70482243 T - CCAR1 5'UTR 0.34 TCGA-HU-A4H3-01 10 70987066 70987067 - CC HKDC1 Frame_Shift_Ins p.T58Pfs*5 0.18 TCGA-HU-A4H3-01 10 71874701 71874701 C T AIFM2 Silent p.Q315Q 0.31 TCGA-HU-A4H3-01 10 73511467 73511467 G - C10orf54 Frame_Shift_Del p.L286Cfs*51 0.29 TCGA-HU-A4H3-01 10 74114697 74114697 G T DNAJB12 Missense_Mutation p.R21S 0.27 deleterious_low_confidence(0) benign(0) TCGA-HU-A4H3-01 10 88769420 88769420 C T RP11-96C23.10 3'Flank 0.34 TCGA-HU-A4H3-01 10 90682146 90682146 A - STAMBPL1 Frame_Shift_Del p.K405Rfs*21 0.34 TCGA-HU-A4H3-01 10 92617113 92617113 C T HTR7 Missense_Mutation p.V106M 0.36 deleterious(0) probably_damaging(1) TCGA-HU-A4H3-01 10 93221959 93221959 C T HECTD2 Intron 0.40 TCGA-HU-A4H3-01 10 93397 93397 G A TUBB8 Missense_Mutation p.T312M 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.787) TCGA-HU-A4H3-01 10 99211554 99211554 A T ZDHHC16 Missense_Mutation p.Y41F 0.41 deleterious(0.01) probably_damaging(0.954) TCGA-HU-A4H3-01 11 1026400 1026401 - G MUC6 Frame_Shift_Ins p.E825Rfs*6 0.34 TCGA-HU-A4H3-01 11 102650093 102650093 C A MMP10 Splice_Site p.X116_splice 0.26 TCGA-HU-A4H3-01 11 10823308 10823308 A T EIF4G2 Missense_Mutation p.L438H 0.34 tolerated(0.54) benign(0.002) TCGA-HU-A4H3-01 11 110036198 110036198 C T ZC3H12C Silent p.P796P 0.32 TCGA-HU-A4H3-01 11 114182908 114182908 C T NNMT Silent p.A168A 0.37 TCGA-HU-A4H3-01 11 117052201 117052201 C T SIDT2 Missense_Mutation p.R85C 0.40 deleterious(0) probably_damaging(0.998) TCGA-HU-A4H3-01 11 117973950 117973950 G A TMPRSS4 Missense_Mutation p.E98K 0.37 tolerated(0.13) benign(0.102) TCGA-HU-A4H3-01 11 119207069 119207069 G A RNF26 Missense_Mutation p.V413I 0.37 tolerated(1) benign(0.004) TCGA-HU-A4H3-01 11 123894243 123894243 A G OR10G9 Missense_Mutation p.H175R 0.23 deleterious(0.01) probably_damaging(1) TCGA-HU-A4H3-01 11 124738822 124738822 T C ROBO3 Silent p.I95I 0.50 TCGA-HU-A4H3-01 11 126215566 126215566 T - DCPS 3'UTR 0.29 TCGA-HU-A4H3-01 11 1262736 1262736 G A MUC5B Silent p.Q1542Q 0.41 TCGA-HU-A4H3-01 11 1265475 1265475 G A MUC5B Silent p.P2455P 0.29 TCGA-HU-A4H3-01 11 1271141 1271141 C A MUC5B Missense_Mutation p.P4344H 0.32 benign(0.012) TCGA-HU-A4H3-01 11 129743720 129743720 C T NFRKB Missense_Mutation p.A849T 0.36 tolerated_low_confidence(0.46) benign(0.085) TCGA-HU-A4H3-01 11 129979402 129979402 C T APLP2 Missense_Mutation p.H62Y 0.36 deleterious(0.01) probably_damaging(1) TCGA-HU-A4H3-01 11 130319163 130319163 C T ADAMTS15 Nonsense_Mutation p.R99* 0.15 TCGA-HU-A4H3-01 11 132082036 132082036 C T NTM Missense_Mutation p.P174L 0.17 deleterious(0.01) benign(0.187) TCGA-HU-A4H3-01 11 17190949 17190949 T - PIK3C2A Frame_Shift_Del p.T114Hfs*10 0.25 TCGA-HU-A4H3-01 11 17498278 17498278 G A ABCC8 Missense_Mutation p.R16W 0.31 deleterious(0) benign(0.17) TCGA-HU-A4H3-01 11 1862085 1862085 G A TNNI2 Missense_Mutation p.A75T 0.24 tolerated(0.06) benign(0.41) TCGA-HU-A4H3-01 11 18655850 18655850 T C SPTY2D1 5'UTR 0.36 TCGA-HU-A4H3-01 11 18763931 18763931 G A PTPN5 Silent p.I201I 0.31 TCGA-HU-A4H3-01 11 205421 205421 G A BET1L Missense_Mutation p.R73C 0.31 deleterious(0) probably_damaging(1) TCGA-HU-A4H3-01 11 281297 281297 C T NLRP6 Silent p.T521T 0.23 TCGA-HU-A4H3-01 11 30033563 30033563 A - KCNA4 Frame_Shift_Del p.F221Lfs*21 0.31 TCGA-HU-A4H3-01 11 30034059 30034059 C - KCNA4 Frame_Shift_Del p.G56Vfs*53 0.33 TCGA-HU-A4H3-01 11 35219723 35219723 T C CD44 Silent p.D284D 0.39 TCGA-HU-A4H3-01 11 44097139 44097139 G - ACCS Frame_Shift_Del 0.31 TCGA-HU-A4H3-01 11 46691079 46691079 C G ATG13 Missense_Mutation p.D524E 0.41 tolerated(0.1) possibly_damaging(0.709) TCGA-HU-A4H3-01 11 46894694 46894694 G A LRP4 Silent p.L1514L 0.31 TCGA-HU-A4H3-01 11 46905424 46905424 G A LRP4 Silent p.G870G 0.34 TCGA-HU-A4H3-01 11 4703475 4703475 A - OR51E2 Frame_Shift_Del p.F156Sfs*6 0.34 TCGA-HU-A4H3-01 11 555902 555902 C T C11orf35 Missense_Mutation p.R469H 0.37 tolerated(0.39) benign(0.022) TCGA-HU-A4H3-01 11 55890155 55890155 T C OR8H3 Missense_Mutation p.C103R 0.38 deleterious(0) benign(0.004) TCGA-HU-A4H3-01 11 56185040 56185040 G T OR5R1 Silent p.A223A 0.14 TCGA-HU-A4H3-01 11 5632278 5632278 T G TRIM6 Silent p.A419A 0.28 TCGA-HU-A4H3-01 11 57564070 57564070 G - CTNND1 Frame_Shift_Del p.G189Dfs*46 0.25 TCGA-HU-A4H3-01 11 58604601 58604601 T - GLYATL2 Frame_Shift_Del p.K121Nfs*5 0.25 TCGA-HU-A4H3-01 11 58949400 58949400 G A DTX4 Missense_Mutation p.V134I 0.35 tolerated(0.79) benign(0.002) TCGA-HU-A4H3-01 11 58949530 58949530 G A DTX4 Missense_Mutation p.S177N 0.17 tolerated(0.25) benign(0.002) TCGA-HU-A4H3-01 11 61318905 61318905 C T SYT7 Missense_Mutation p.V56M 0.22 deleterious_low_confidence(0.02) possibly_damaging(0.781) TCGA-HU-A4H3-01 11 63486964 63486967 TGAT - RTN3 Frame_Shift_Del p.N330Kfs*10 0.28 TCGA-HU-A4H3-01 11 63585422 63585422 C T C11orf84 Silent p.C91C 0.26 TCGA-HU-A4H3-01 11 63992188 63992188 A G TRPT1 Missense_Mutation p.V112A 0.19 tolerated(0.17) benign(0.223) TCGA-HU-A4H3-01 11 64390507 64390507 G A NRXN2 Silent p.I1297I 0.31 TCGA-HU-A4H3-01 11 64569590 64569590 G A MAP4K2 Missense_Mutation p.T105I 0.20 deleterious(0) probably_damaging(0.915) TCGA-HU-A4H3-01 11 64815659 64815659 G A NAALADL1 Missense_Mutation p.T438M 0.14 deleterious(0) benign(0.16) TCGA-HU-A4H3-01 11 65271397 65271397 T C MALAT1 RNA 0.29 TCGA-HU-A4H3-01 11 65272645 65272645 T A MALAT1 RNA 0.16 TCGA-HU-A4H3-01 11 65325120 65325120 G A LTBP3 Missense_Mutation p.T104M 0.39 deleterious(0) possibly_damaging(0.662) TCGA-HU-A4H3-01 11 65426295 65426295 T C RELA Splice_Site p.X187_splice 0.42 TCGA-HU-A4H3-01 11 67079247 67079252 GCAGGG - SSH3 In_Frame_Del p.Q630_G631del 0.39 TCGA-HU-A4H3-01 11 67261407 67261407 C T PITPNM1 Silent p.V998V 0.18 TCGA-HU-A4H3-01 11 67786680 67786680 G A ALDH3B1 Missense_Mutation p.V145I 0.27 tolerated(0.07) benign(0.002) TCGA-HU-A4H3-01 11 687963 687963 G A DEAF1 Silent p.P204P 0.35 TCGA-HU-A4H3-01 11 70333007 70333007 C - SHANK2 Frame_Shift_Del p.D1132Ifs*43 0.25 TCGA-HU-A4H3-01 11 71718403 71718403 G - NUMA1 Frame_Shift_Del p.K1766Rfs*2 0.12 TCGA-HU-A4H3-01 11 72004321 72004321 C T CLPB 3'UTR 0.40 TCGA-HU-A4H3-01 11 73007933 73007933 C T P2RY6 Missense_Mutation p.R124C 0.29 deleterious(0.01) probably_damaging(1) TCGA-HU-A4H3-01 11 78449536 78449536 T C TENM4 Missense_Mutation p.N946D 0.26 tolerated(0.13) benign(0.002) TCGA-HU-A4H3-01 11 92086841 92086841 T C FAT3 Silent p.I521I 0.27 TCGA-HU-A4H3-01 11 95564332 95564332 A - CEP57 Frame_Shift_Del p.R474Gfs*8 0.32 TCGA-HU-A4H3-01 11 96117891 96117891 A G CCDC82 Silent p.H7H 0.38 TCGA-HU-A4H3-01 11 99827598 99827598 G A CNTN5 Missense_Mutation p.R245Q 0.31 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H3-01 12 101873423 101873423 A G SPIC Missense_Mutation p.Y54C 0.19 tolerated(0.26) benign(0.002) TCGA-HU-A4H3-01 12 104497057 104497057 T - HCFC2 3'UTR 0.22 TCGA-HU-A4H3-01 12 10587931 10587931 T C KLRC2 Missense_Mutation p.K89R 0.19 tolerated(0.22) benign(0.021) TCGA-HU-A4H3-01 12 107365084 107365084 C G C12orf23 Missense_Mutation p.A89G 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.621) TCGA-HU-A4H3-01 12 108913176 108913176 C T FICD Missense_Mutation p.T434I 0.29 deleterious(0.03) benign(0.374) TCGA-HU-A4H3-01 12 109889532 109889532 C T KCTD10 Silent p.A270A 0.34 TCGA-HU-A4H3-01 12 110019240 110019240 C - MVK Frame_Shift_Del p.A141Rfs*18 0.33 TCGA-HU-A4H3-01 12 111734323 111734323 C T CUX2 Silent p.Y228Y 0.23 TCGA-HU-A4H3-01 12 112492200 112492202 ATC - NAA25 In_Frame_Del p.D540del 0.37 TCGA-HU-A4H3-01 12 112607396 112607396 G A HECTD4 Missense_Mutation p.S3894L 0.38 probably_damaging(0.982) TCGA-HU-A4H3-01 12 113553853 113553853 C - RASAL1 Frame_Shift_Del p.N246Tfs*7 0.15 TCGA-HU-A4H3-01 12 116429481 116429481 T C MED13L Missense_Mutation p.N1093S 0.40 tolerated(0.39) unknown(0) TCGA-HU-A4H3-01 12 117187926 117187926 C T RNFT2 Missense_Mutation p.R122C 0.42 tolerated(0.07) possibly_damaging(0.877) TCGA-HU-A4H3-01 12 122396297 122396297 A G WDR66 Missense_Mutation p.Y617C 0.34 tolerated(0.1) benign(0.049) TCGA-HU-A4H3-01 12 122623059 122623059 G A MLXIP Missense_Mutation p.R782Q 0.41 tolerated(0.06) benign(0.067) TCGA-HU-A4H3-01 12 122958509 122958509 G A ZCCHC8 Silent p.S553S 0.30 TCGA-HU-A4H3-01 12 123060345 123060345 A G KNTC1 Splice_Site p.X829_splice 0.17 TCGA-HU-A4H3-01 12 123470761 123470761 C T PITPNM2 Missense_Mutation p.R1288H 0.38 deleterious(0) probably_damaging(0.996) TCGA-HU-A4H3-01 12 125449032 125449032 G A DHX37 Silent p.G651G 0.34 TCGA-HU-A4H3-01 12 132445499 132445499 G A EP400 Missense_Mutation p.R112Q 0.28 unknown(0) TCGA-HU-A4H3-01 12 16753644 16753644 C A LMO3 Intron 0.08 TCGA-HU-A4H3-01 12 29709910 29709910 G A TMTC1 Missense_Mutation p.A519V 0.48 tolerated(0.07) probably_damaging(0.996) TCGA-HU-A4H3-01 12 32793556 32793556 A G FGD4 3'UTR 0.25 TCGA-HU-A4H3-01 12 34179308 34179308 T - ALG10 Frame_Shift_Del p.S296Hfs*23 0.26 TCGA-HU-A4H3-01 12 4719362 4719362 A - DYRK4 Frame_Shift_Del p.R355Dfs*12 0.29 TCGA-HU-A4H3-01 12 49420859 49420859 G A KMT2D Missense_Mutation p.R4964C 0.27 unknown(0) TCGA-HU-A4H3-01 12 49447773 49447773 C - KMT2D Frame_Shift_Del p.A221Lfs*40 0.23 TCGA-HU-A4H3-01 12 50384071 50384072 - A RACGAP1 Frame_Shift_Ins p.A627Cfs*18 0.21 TCGA-HU-A4H3-01 12 52627009 52627009 C T KRT7 5'UTR 0.33 TCGA-HU-A4H3-01 12 53453399 53453399 G - TENC1 Frame_Shift_Del p.K670Nfs*96 0.22 TCGA-HU-A4H3-01 12 53701365 53701365 G T AAAS Missense_Mutation p.L517I 0.37 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-HU-A4H3-01 12 53819645 53819645 G - AMHR2 Frame_Shift_Del p.G267Vfs*25 0.33 TCGA-HU-A4H3-01 12 53877706 53877708 CCT - MAP3K12 In_Frame_Del p.R449del 0.32 TCGA-HU-A4H3-01 12 55759486 55759486 T - OR6C75 Frame_Shift_Del p.L200* 0.34 TCGA-HU-A4H3-01 12 57397071 57397071 C T ZBTB39 Missense_Mutation p.S544N 0.24 tolerated(0.06) benign(0.002) TCGA-HU-A4H3-01 12 57859007 57859007 C A GLI1 Missense_Mutation p.P168H 0.29 deleterious(0.01) possibly_damaging(0.886) TCGA-HU-A4H3-01 12 58142245 58142245 C T CDK4 3'UTR 0.05 TCGA-HU-A4H3-01 12 58202264 58202264 G A AVIL Missense_Mutation p.S336L 0.38 deleterious(0) probably_damaging(0.998) TCGA-HU-A4H3-01 12 6438696 6438696 C T TNFRSF1A Missense_Mutation p.E384K 0.37 deleterious(0.01) probably_damaging(0.97) TCGA-HU-A4H3-01 12 64808688 64808688 C T XPOT Missense_Mutation p.A21V 0.10 tolerated(0.09) possibly_damaging(0.658) TCGA-HU-A4H3-01 12 6964600 6964600 G A USP5 Silent p.T49T 0.30 TCGA-HU-A4H3-01 12 71155319 71155319 G A PTPRR Missense_Mutation p.R187C 0.31 deleterious(0) possibly_damaging(0.487) TCGA-HU-A4H3-01 12 7173239 7173239 A - C1S Frame_Shift_Del p.K281Rfs*39 0.28 TCGA-HU-A4H3-01 12 78571062 78571062 G T NAV3 Missense_Mutation p.A1756S 0.34 tolerated(0.29) benign(0.002) TCGA-HU-A4H3-01 12 88588948 88588949 - A TMTC3 Frame_Shift_Ins p.C759Mfs*3 0.26 TCGA-HU-A4H3-01 12 91502483 91502483 G T LUM Missense_Mutation p.L92M 0.38 deleterious(0) probably_damaging(1) TCGA-HU-A4H3-01 12 9268558 9268558 C T A2M 5'UTR 0.38 TCGA-HU-A4H3-01 12 993365 993365 G T WNK1 Missense_Mutation p.R1267L 0.34 deleterious(0) benign(0.35) TCGA-HU-A4H3-01 12 99837512 99837512 T C ANKS1B Missense_Mutation p.D505G 0.25 deleterious(0.01) probably_damaging(0.982) TCGA-HU-A4H3-01 13 102029266 102029266 A G NALCN Splice_Site p.X172_splice 0.27 TCGA-HU-A4H3-01 13 108518356 108518356 G A FAM155A Missense_Mutation p.R197W 0.42 deleterious(0) possibly_damaging(0.862) TCGA-HU-A4H3-01 13 113960868 113960868 G A LAMP1 Missense_Mutation p.A44T 0.27 deleterious(0) probably_damaging(0.998) TCGA-HU-A4H3-01 13 115051799 115051800 AG - UPF3A Frame_Shift_Del p.E149Vfs*25 0.24 TCGA-HU-A4H3-01 13 21417957 21417957 G A XPO4 Silent p.N175N 0.34 TCGA-HU-A4H3-01 13 23906391 23906391 C T SACS Missense_Mutation p.R3875H 0.27 probably_damaging(0.994) TCGA-HU-A4H3-01 13 23908934 23908934 A - SACS Frame_Shift_Del p.F3027Lfs*25 0.32 TCGA-HU-A4H3-01 13 26620736 26620736 C T SHISA2 Missense_Mutation p.G268D 0.36 tolerated(0.36) benign(0.262) TCGA-HU-A4H3-01 13 26788460 26788460 A G RNF6 Missense_Mutation p.L520P 0.34 tolerated(0.31) benign(0.265) TCGA-HU-A4H3-01 13 28578289 28578289 C G FLT3 Missense_Mutation p.R961P 0.17 tolerated(0.14) benign(0.001) TCGA-HU-A4H3-01 13 28866678 28866678 G A PAN3 3'Flank 0.06 TCGA-HU-A4H3-01 13 36905729 36905729 C A SPG20 Missense_Mutation p.C272F 0.29 deleterious(0) probably_damaging(0.989) TCGA-HU-A4H3-01 13 42874500 42874500 A - AKAP11 Frame_Shift_Del p.N541Ifs*4 0.39 TCGA-HU-A4H3-01 13 43788214 43788214 C T ENOX1 Missense_Mutation p.R615H 0.28 tolerated(0.39) benign(0.374) TCGA-HU-A4H3-01 13 51825626 51825626 G A FAM124A Silent p.A77A 0.31 TCGA-HU-A4H3-01 13 51855427 51855427 T G FAM124A 3'UTR 0.39 TCGA-HU-A4H3-01 13 52025108 52025108 T - INTS6 Intron 0.24 TCGA-HU-A4H3-01 13 52604361 52604361 A - UTP14C Frame_Shift_Del p.A476Qfs*37 0.29 TCGA-HU-A4H3-01 13 73352362 73352363 TT - DIS3 Frame_Shift_Del p.K181Rfs*14 0.26 TCGA-HU-A4H3-01 13 75863191 75863191 A G TBC1D4 Missense_Mutation p.V1181A 0.34 deleterious(0) probably_damaging(0.995) TCGA-HU-A4H3-01 13 99354751 99354751 T - SLC15A1 Frame_Shift_Del p.E485Kfs*7 0.28 TCGA-HU-A4H3-01 14 100402660 100402660 A - EML1 Frame_Shift_Del p.I715Sfs*13 0.18 TCGA-HU-A4H3-01 14 102391688 102391688 A G PPP2R5C 3'UTR 0.43 TCGA-HU-A4H3-01 14 102551762 102551762 G T HSP90AA1 Missense_Mutation p.P301H 0.23 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-HU-A4H3-01 14 103395179 103395181 TCT - AMN In_Frame_Del p.F129del 0.43 TCGA-HU-A4H3-01 14 105169757 105169758 GC - INF2 Frame_Shift_Del p.R214Hfs*38 0.15 TCGA-HU-A4H3-01 14 105239379 105239379 G A AKT1 Silent p.G336G 0.43 TCGA-HU-A4H3-01 14 20586464 20586464 A C OR4K17 Missense_Mutation p.K300T 0.24 deleterious(0) probably_damaging(0.995) TCGA-HU-A4H3-01 14 21458721 21458721 G A METTL17 Missense_Mutation p.A110T 0.39 deleterious(0.02) probably_damaging(0.996) TCGA-HU-A4H3-01 14 21897486 21897486 C T CHD8 Silent p.S284S 0.46 TCGA-HU-A4H3-01 14 23072850 23072850 T C ABHD4 Missense_Mutation p.V169A 0.29 tolerated(0.75) benign(0.313) TCGA-HU-A4H3-01 14 23451381 23451381 C A AJUBA Missense_Mutation p.G32V 0.38 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-HU-A4H3-01 14 23859422 23859422 C T MYH6 Silent p.A1192A 0.31 TCGA-HU-A4H3-01 14 24590651 24590651 C T DCAF11 Missense_Mutation p.R442C 0.34 deleterious(0) probably_damaging(1) TCGA-HU-A4H3-01 14 26917657 26917657 A G NOVA1 Silent p.A344A 0.33 TCGA-HU-A4H3-01 14 32562696 32562696 A - ARHGAP5 Frame_Shift_Del p.N943Ifs*2 0.41 TCGA-HU-A4H3-01 14 35871169 35871169 T - NFKBIA 3'UTR 0.39 TCGA-HU-A4H3-01 14 36197626 36197626 G A RALGAPA1 Missense_Mutation p.R560C 0.50 deleterious(0.01) probably_damaging(0.999) TCGA-HU-A4H3-01 14 36987121 36987121 G T NKX2-1 Missense_Mutation p.P190T 0.33 deleterious(0.01) probably_damaging(0.943) TCGA-HU-A4H3-01 14 37051465 37051465 G A NKX2-8 Silent p.L44L 0.21 TCGA-HU-A4H3-01 14 38061521 38061521 G A FOXA1 Silent p.G156G 0.42 TCGA-HU-A4H3-01 14 42355997 42355997 C T LRFN5 Missense_Mutation p.R57W 0.35 deleterious(0) probably_damaging(1) TCGA-HU-A4H3-01 14 42360596 42360596 C T LRFN5 Missense_Mutation p.T510M 0.32 deleterious(0) probably_damaging(1) TCGA-HU-A4H3-01 14 55310426 55310426 A - GCH1 3'UTR 0.24 TCGA-HU-A4H3-01 14 58598353 58598353 C - C14orf37 Frame_Shift_Del p.E570Nfs*99 0.27 TCGA-HU-A4H3-01 14 59961785 59961785 G A JKAMP Missense_Mutation p.A101T 0.13 deleterious(0.01) probably_damaging(0.913) TCGA-HU-A4H3-01 14 60097226 60097226 G A RTN1 Intron 0.36 TCGA-HU-A4H3-01 14 67843159 67843159 T C EIF2S1 Missense_Mutation p.Y109H 0.39 tolerated(1) benign(0.023) TCGA-HU-A4H3-01 14 70512799 70512799 C T SLC8A3 Silent p.R883R 0.26 TCGA-HU-A4H3-01 14 74825385 74825385 G A VRTN Silent p.A633A 0.28 TCGA-HU-A4H3-01 14 75142501 75142501 G T AREL1 Silent p.S327S 0.36 TCGA-HU-A4H3-01 14 75359617 75359617 C - DLST Frame_Shift_Del p.P176Lfs*27 0.31 TCGA-HU-A4H3-01 14 78140528 78140528 G A ALKBH1 Missense_Mutation p.T266M 0.35 tolerated(0.08) probably_damaging(0.99) TCGA-HU-A4H3-01 14 86089608 86089608 C T FLRT2 Missense_Mutation p.R584W 0.32 deleterious(0) probably_damaging(0.996) TCGA-HU-A4H3-01 14 89153595 89153595 G A EML5 Missense_Mutation p.A940V 0.46 tolerated(0.16) benign(0.343) TCGA-HU-A4H3-01 14 91942831 91942831 G A SMEK1 Missense_Mutation p.T344M 0.40 deleterious(0.03) probably_damaging(0.994) TCGA-HU-A4H3-01 14 94467624 94467624 C A LINC00521 RNA 0.29 TCGA-HU-A4H3-01 14 96770878 96770878 C - ATG2B Frame_Shift_Del p.G1599Efs*9 0.30 TCGA-HU-A4H3-01 15 100692871 100692871 G A ADAMTS17 Silent p.N473N 0.08 TCGA-HU-A4H3-01 15 20170034 20170034 C T IGHV1OR15-9 Missense_Mutation p.A80T 0.28 tolerated(0.16) benign(0.288) TCGA-HU-A4H3-01 15 20495387 20495387 T C CHEK2P2 RNA 0.07 TCGA-HU-A4H3-01 15 20651283 20651283 G A HERC2P3 RNA 0.13 TCGA-HU-A4H3-01 15 22368585 22368585 G A OR4M2 Missense_Mutation p.A4T 0.13 tolerated(0.42) benign(0.002) TCGA-HU-A4H3-01 15 22382692 22382692 T G OR4N4 Missense_Mutation p.S74A 0.12 tolerated(0.08) benign(0.047) TCGA-HU-A4H3-01 15 23311733 23311733 G A HERC2P2 RNA 0.29 TCGA-HU-A4H3-01 15 23443516 23443516 C A AC100757.1 5'Flank 0.53 TCGA-HU-A4H3-01 15 23811404 23811405 - C MKRN3 Frame_Shift_Ins p.A162Gfs*15 0.30 TCGA-HU-A4H3-01 15 25313004 25313004 C T SNORD116-7 RNA 0.35 TCGA-HU-A4H3-01 15 25326502 25326502 G A SNORD116-15 RNA 0.39 TCGA-HU-A4H3-01 15 25425501 25425501 G C SNORD115-6 5'Flank 0.27 TCGA-HU-A4H3-01 15 31234037 31234038 CA - MTMR10 Frame_Shift_Del p.W657Efs*30 0.37 TCGA-HU-A4H3-01 15 33603232 33603232 G A RYR3 5'UTR 0.50 TCGA-HU-A4H3-01 15 33873717 33873717 G A RYR3 Silent p.L482L 0.24 TCGA-HU-A4H3-01 15 33893731 33893731 C T RYR3 Nonsense_Mutation p.R634* 0.43 TCGA-HU-A4H3-01 15 34649312 34649312 A T NUTM1 Nonsense_Mutation p.K1007* 0.24 TCGA-HU-A4H3-01 15 34649327 34649327 G C NUTM1 Missense_Mutation p.E1012Q 0.28 deleterious(0.02) possibly_damaging(0.448) TCGA-HU-A4H3-01 15 40678643 40678643 G A KNSTRN Missense_Mutation p.G129R 0.30 deleterious(0) probably_damaging(1) TCGA-HU-A4H3-01 15 41667943 41667943 C T NUSAP1 Missense_Mutation p.T347M 0.34 tolerated(0.22) benign(0.043) TCGA-HU-A4H3-01 15 42042041 42042041 A - MGA Frame_Shift_Del p.V2081Wfs*21 0.27 TCGA-HU-A4H3-01 15 42377688 42377688 C T PLA2G4D Splice_Site p.X143_splice 0.35 TCGA-HU-A4H3-01 15 42742957 42742957 A - ZNF106 Frame_Shift_Del p.S482Pfs*33 0.31 TCGA-HU-A4H3-01 15 44097134 44097134 A G MFAP1 3'UTR 0.45 TCGA-HU-A4H3-01 15 48413289 48413289 C T SLC24A5 Silent p.L16L 0.26 TCGA-HU-A4H3-01 15 50264853 50264853 A - ATP8B4 Frame_Shift_Del p.F390Sfs*13 0.27 TCGA-HU-A4H3-01 15 52075001 52075001 T C TMOD2 Silent p.T236T 0.37 TCGA-HU-A4H3-01 15 54825154 54825154 T C UNC13C Silent p.S1862S 0.28 TCGA-HU-A4H3-01 15 56436614 56436614 C T RFX7 Missense_Mutation p.S88N 0.32 tolerated(0.11) benign(0.016) TCGA-HU-A4H3-01 15 65555515 65555515 C T PARP16 Silent p.P221P 0.41 TCGA-HU-A4H3-01 15 74277088 74277088 G T STOML1 Silent p.A305A 0.39 TCGA-HU-A4H3-01 15 74326692 74326692 G A PML Intron 0.32 TCGA-HU-A4H3-01 15 75013634 75013634 G A CYP1A1 Missense_Mutation p.R358W 0.32 deleterious(0) benign(0.115) TCGA-HU-A4H3-01 15 75117998 75117998 G - LMAN1L 3'UTR 0.26 TCGA-HU-A4H3-01 15 75503534 75503534 C T C15orf39 3'UTR 0.19 TCGA-HU-A4H3-01 15 78401674 78401674 C A CIB2 Missense_Mutation p.E83D 0.33 tolerated(1) benign(0.006) TCGA-HU-A4H3-01 15 78927807 78927807 G A CHRNB4 Missense_Mutation p.L60F 0.34 deleterious(0.01) probably_damaging(0.945) TCGA-HU-A4H3-01 15 79092719 79092719 G A ADAMTS7 Silent p.L91L 0.18 TCGA-HU-A4H3-01 15 81241381 81241381 G A KIAA1199 3'UTR 0.38 TCGA-HU-A4H3-01 15 82336037 82336037 C T MEX3B Missense_Mutation p.V392I 0.44 tolerated(0.25) benign(0.001) TCGA-HU-A4H3-01 15 84245409 84245409 C T SH3GL3 Silent p.D180D 0.36 TCGA-HU-A4H3-01 15 84373227 84373227 G A ADAMTSL3 Silent p.G52G 0.33 TCGA-HU-A4H3-01 15 84657541 84657541 A G ADAMTSL3 Missense_Mutation p.D1272G 0.16 deleterious(0.01) probably_damaging(0.944) TCGA-HU-A4H3-01 15 85400266 85400267 - A ALPK3 Frame_Shift_Ins p.P971Tfs*8 0.36 TCGA-HU-A4H3-01 15 85400994 85400994 C T ALPK3 Missense_Mutation p.R1211W 0.28 deleterious(0) probably_damaging(0.984) TCGA-HU-A4H3-01 15 86807693 86807693 A - AGBL1 Frame_Shift_Del p.N387Ifs*4 0.39 TCGA-HU-A4H3-01 15 89020237 89020237 C T MRPS11 Silent p.G143G 0.38 TCGA-HU-A4H3-01 15 91172715 91172715 G A CRTC3 Missense_Mutation p.S406N 0.35 tolerated(0.18) benign(0.002) TCGA-HU-A4H3-01 15 94858782 94858782 T C MCTP2 Silent p.L185L 0.22 TCGA-HU-A4H3-01 15 99442794 99442794 C T IGF1R Silent p.V397V 0.32 TCGA-HU-A4H3-01 15 99926275 99926275 C T LRRC28 Nonsense_Mutation p.Q358* 0.27 TCGA-HU-A4H3-01 16 11781746 11781746 C T TXNDC11 Missense_Mutation p.R707Q 0.17 tolerated(0.07) possibly_damaging(0.875) TCGA-HU-A4H3-01 16 1392008 1392008 C A BAIAP3 Silent p.S301S 0.32 TCGA-HU-A4H3-01 16 15978038 15978038 T - FOPNL Frame_Shift_Del p.K18Rfs*4 0.29 TCGA-HU-A4H3-01 16 19498596 19498596 T - TMC5 Frame_Shift_Del p.F842Sfs*18 0.34 TCGA-HU-A4H3-01 16 19725566 19725566 G T KNOP1 Silent p.A264A 0.45 TCGA-HU-A4H3-01 16 23701273 23701275 GGA - PLK1 In_Frame_Del p.E569del 0.35 TCGA-HU-A4H3-01 16 24046762 24046762 G A PRKCB Silent p.K141K 0.41 TCGA-HU-A4H3-01 16 2506911 2506911 C T CCNF Missense_Mutation p.R751C 0.34 tolerated_low_confidence(0.22) possibly_damaging(0.513) TCGA-HU-A4H3-01 16 27441397 27441397 C T IL21R Missense_Mutation p.P2L 0.17 tolerated_low_confidence(0.67) benign(0.01) TCGA-HU-A4H3-01 16 28848083 28848083 C - ATXN2L 3'UTR 0.25 TCGA-HU-A4H3-01 16 29376325 29376325 G A SNX29P2 RNA 0.27 TCGA-HU-A4H3-01 16 30544295 30544295 G - ZNF747 3'UTR 0.33 TCGA-HU-A4H3-01 16 30581665 30581665 G A ZNF688 Silent p.L135L 0.37 TCGA-HU-A4H3-01 16 31091327 31091327 G A ZNF646 Missense_Mutation p.G1228S 0.27 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H3-01 16 31123674 31123675 CA - BCKDK 3'UTR 0.19 TCGA-HU-A4H3-01 16 31485172 31485172 C T TGFB1I1 Missense_Mutation p.R67W 0.22 deleterious(0.05) probably_damaging(0.984) TCGA-HU-A4H3-01 16 396381 396381 C T AXIN1 Silent p.S215S 0.43 TCGA-HU-A4H3-01 16 4164837 4164837 C T ADCY9 Missense_Mutation p.D203N 0.39 tolerated(0.55) benign(0.002) TCGA-HU-A4H3-01 16 4242144 4242144 G A SRL 3'UTR 0.37 TCGA-HU-A4H3-01 16 4386992 4386992 G A GLIS2 Missense_Mutation p.V348I 0.47 deleterious(0.01) benign(0.008) TCGA-HU-A4H3-01 16 51175644 51175646 GCC - SALL1 In_Frame_Del p.G163del 0.28 TCGA-HU-A4H3-01 16 53534205 53534205 T C AKTIP 5'UTR 0.35 TCGA-HU-A4H3-01 16 57789031 57789031 C T KATNB1 Silent p.L433L 0.26 TCGA-HU-A4H3-01 16 66949216 66949216 G A CDH16 Nonsense_Mutation p.R164* 0.38 TCGA-HU-A4H3-01 16 69400774 69400774 C T TERF2 Missense_Mutation p.A384T 0.29 tolerated(0.21) benign(0.001) TCGA-HU-A4H3-01 16 700674 700674 G T WDR90 Missense_Mutation p.R175M 0.42 deleterious(0) probably_damaging(0.934) TCGA-HU-A4H3-01 16 70698147 70698147 G - MTSS1L Frame_Shift_Del p.G560Afs*34 0.36 TCGA-HU-A4H3-01 16 70841641 70841641 G A HYDIN Missense_Mutation p.R5070W 0.36 probably_damaging(0.942) TCGA-HU-A4H3-01 16 71602123 71602123 G A TAT Missense_Mutation p.A430V 0.47 deleterious(0.02) probably_damaging(0.98) TCGA-HU-A4H3-01 16 71724517 71724517 G A PHLPP2 Missense_Mutation p.R172C 0.34 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H3-01 16 74496029 74496029 C T GLG1 Missense_Mutation p.R1000H 0.20 tolerated(0.25) benign(0.445) TCGA-HU-A4H3-01 16 74519764 74519764 G A GLG1 Nonsense_Mutation p.R501* 0.38 TCGA-HU-A4H3-01 16 784610 784610 A G NARFL Intron 0.30 TCGA-HU-A4H3-01 16 84213037 84213037 G - TAF1C Frame_Shift_Del p.P707Lfs*7 0.19 TCGA-HU-A4H3-01 16 84215812 84215812 C T TAF1C Silent p.R239R 0.44 TCGA-HU-A4H3-01 16 84256129 84256129 C T KCNG4 Silent p.T418T 0.21 TCGA-HU-A4H3-01 16 87445211 87445211 T - ZCCHC14 Frame_Shift_Del p.K902Rfs*35 0.29 TCGA-HU-A4H3-01 16 90001915 90001915 C T TUBB3 Silent p.A352A 0.36 TCGA-HU-A4H3-01 17 10538325 10538325 C T MYH3 Silent p.Q1396Q 0.31 TCGA-HU-A4H3-01 17 10541627 10541627 C T MYH3 Silent p.A1154A 0.37 TCGA-HU-A4H3-01 17 12897751 12897751 T G ELAC2 Missense_Mutation p.K700T 0.08 deleterious(0) probably_damaging(0.998) TCGA-HU-A4H3-01 17 15217493 15217493 C T TEKT3 Silent p.T263T 0.31 TCGA-HU-A4H3-01 17 16550695 16550695 G A ZNF624 Missense_Mutation p.T34I 0.31 tolerated(0.2) benign(0.015) TCGA-HU-A4H3-01 17 17209922 17209922 C T NT5M Silent p.A111A 0.29 TCGA-HU-A4H3-01 17 18023025 18023025 C T MYO15A Missense_Mutation p.T304I 0.28 benign(0.007) TCGA-HU-A4H3-01 17 18045519 18045519 C T MYO15A Missense_Mutation p.R1926C 0.27 unknown(0) TCGA-HU-A4H3-01 17 18219551 18219551 G A SMCR8 Missense_Mutation p.V150M 0.38 deleterious(0) probably_damaging(1) TCGA-HU-A4H3-01 17 18225952 18225952 C T SMCR8 Silent p.A794A 0.18 TCGA-HU-A4H3-01 17 2203754 2203754 C T SMG6 Missense_Mutation p.C98Y 0.30 tolerated_low_confidence(1) benign(0.007) TCGA-HU-A4H3-01 17 25877651 25877651 G C KSR1 5'UTR 0.31 TCGA-HU-A4H3-01 17 2598515 2598515 T C CLUH Silent p.L829L 0.33 TCGA-HU-A4H3-01 17 26671481 26671481 C T TNFAIP1 Missense_Mutation p.A269V 0.31 deleterious(0.01) benign(0.339) TCGA-HU-A4H3-01 17 26941892 26941892 A G KIAA0100 3'UTR 0.50 TCGA-HU-A4H3-01 17 27064710 27064710 C T NEK8 Missense_Mutation p.A282V 0.33 tolerated(0.35) benign(0.001) TCGA-HU-A4H3-01 17 27068189 27068189 G A NEK8 Missense_Mutation p.G609D 0.35 tolerated(0.22) benign(0.037) TCGA-HU-A4H3-01 17 27493332 27493332 G - MYO18A Frame_Shift_Del p.V210Wfs*86 0.34 TCGA-HU-A4H3-01 17 29509634 29509634 T C NF1 Missense_Mutation p.I280T 0.33 tolerated(0.07) probably_damaging(0.921) TCGA-HU-A4H3-01 17 3431416 3431416 A G TRPV3 Missense_Mutation p.I469T 0.54 tolerated(0.47) benign(0) TCGA-HU-A4H3-01 17 3558639 3558639 C T CTNS Missense_Mutation p.R152W 0.31 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H3-01 17 36484278 36484278 C A GPR179 Missense_Mutation p.R1725M 0.05 deleterious(0.01) possibly_damaging(0.885) TCGA-HU-A4H3-01 17 37107906 37107906 G A FBXO47 Missense_Mutation p.R182C 0.35 deleterious(0) probably_damaging(0.932) TCGA-HU-A4H3-01 17 39092736 39092737 - C KRT23 Frame_Shift_Ins p.A41Sfs*76 0.29 TCGA-HU-A4H3-01 17 39394461 39394461 A - KRTAP9-8 Frame_Shift_Del p.N54Tfs*9 0.13 TCGA-HU-A4H3-01 17 39534393 39534393 G T KRT34 Missense_Mutation p.P410H 0.23 deleterious(0) probably_damaging(0.971) TCGA-HU-A4H3-01 17 39633363 39633363 C T KRT35 Missense_Mutation p.R438H 0.27 tolerated(0.16) benign(0.003) TCGA-HU-A4H3-01 17 3974038 3974038 C T ZZEF1 Missense_Mutation p.A1339T 0.39 deleterious(0.01) possibly_damaging(0.711) TCGA-HU-A4H3-01 17 39994136 39994136 C A KLHL10 5'UTR 0.36 TCGA-HU-A4H3-01 17 40832555 40832555 A G CCR10 Silent p.D35D 0.44 TCGA-HU-A4H3-01 17 40939870 40939870 G - WNK4 Frame_Shift_Del p.V608Cfs*53 0.36 TCGA-HU-A4H3-01 17 41243800 41243800 C T BRCA1 Missense_Mutation p.E1250K 0.27 tolerated(0.06) possibly_damaging(0.481) TCGA-HU-A4H3-01 17 43045010 43045010 A C C1QL1 Missense_Mutation p.L136R 0.39 deleterious(0.03) probably_damaging(0.967) TCGA-HU-A4H3-01 17 43174504 43174504 G A NMT1 Missense_Mutation p.R202Q 0.36 tolerated(0.85) benign(0.023) TCGA-HU-A4H3-01 17 43907506 43907506 G A CRHR1 Missense_Mutation p.A190T 0.44 tolerated(1) benign(0.03) TCGA-HU-A4H3-01 17 46154279 46154279 G A CBX1 Nonsense_Mutation p.R30* 0.28 TCGA-HU-A4H3-01 17 46196139 46196139 G A SNX11 Missense_Mutation p.G102S 0.35 deleterious(0.02) probably_damaging(0.994) TCGA-HU-A4H3-01 17 48437479 48437479 G A XYLT2 Missense_Mutation p.E809K 0.35 deleterious(0.01) benign(0.356) TCGA-HU-A4H3-01 17 48629529 48629529 C T SPATA20 Missense_Mutation p.R649C 0.33 deleterious(0) probably_damaging(0.997) TCGA-HU-A4H3-01 17 4885435 4885435 A G CAMTA2 Silent p.V143V 0.32 TCGA-HU-A4H3-01 17 5312106 5312106 G A NUP88 Silent p.Y268Y 0.26 TCGA-HU-A4H3-01 17 56284534 56284534 C T MKS1 Missense_Mutation p.G440D 0.04 tolerated(0.09) benign(0.056) TCGA-HU-A4H3-01 17 56435161 56435161 C - RNF43 Frame_Shift_Del p.G659Vfs*41 0.47 TCGA-HU-A4H3-01 17 60743813 60743813 C T MRC2 Intron 0.33 TCGA-HU-A4H3-01 17 61911635 61911635 C T SMARCD2 Silent p.T325T 0.29 TCGA-HU-A4H3-01 17 61958199 61958199 C T GH2 Missense_Mutation p.G130D 0.39 tolerated(0.42) benign(0.035) TCGA-HU-A4H3-01 17 62523312 62523312 T G CEP95 Missense_Mutation p.D412E 0.31 tolerated(0.27) benign(0.02) TCGA-HU-A4H3-01 17 65336910 65336910 T - PSMD12 3'UTR 0.30 TCGA-HU-A4H3-01 17 70120416 70120416 A G SOX9 Missense_Mutation p.Q473R 0.31 tolerated(0.58) probably_damaging(0.985) TCGA-HU-A4H3-01 17 7127562 7127562 G A ACADVL Missense_Mutation p.R534Q 0.25 tolerated(0.07) possibly_damaging(0.493) TCGA-HU-A4H3-01 17 74073226 74073226 C T GALR2 Missense_Mutation p.A293V 0.54 deleterious(0) possibly_damaging(0.907) TCGA-HU-A4H3-01 17 74272799 74272799 C T QRICH2 Missense_Mutation p.R1606Q 0.25 deleterious(0) probably_damaging(0.998) TCGA-HU-A4H3-01 17 74395743 74395743 C A UBE2O Missense_Mutation p.R472M 0.05 tolerated(0.2) benign(0.143) TCGA-HU-A4H3-01 17 74396252 74396252 C T UBE2O Silent p.Q377Q 0.23 TCGA-HU-A4H3-01 17 75484868 75484868 T A SEPT9 Missense_Mutation p.V395D 0.17 deleterious(0) possibly_damaging(0.511) TCGA-HU-A4H3-01 17 7578475 7578475 G - TP53 Frame_Shift_Del p.P152Rfs*18 0.28 TCGA-HU-A4H3-01 17 78021186 78021186 G A CCDC40 Missense_Mutation p.V221I 0.33 tolerated(0.39) benign(0.038) TCGA-HU-A4H3-01 17 78341576 78341576 C T RNF213 Missense_Mutation p.T3967M 0.38 benign(0.243) TCGA-HU-A4H3-01 17 79412060 79412060 G A RP11-1055B8.7 Silent p.A897A 0.45 TCGA-HU-A4H3-01 17 79649138 79649138 G A ARL16 Silent p.S116S 0.25 TCGA-HU-A4H3-01 17 7979592 7979592 C T ALOX12B Missense_Mutation p.S478N 0.45 tolerated(0.29) benign(0.009) TCGA-HU-A4H3-01 17 79862799 79862799 G A PCYT2 Silent p.N378N 0.56 TCGA-HU-A4H3-01 17 79914942 79914942 C - NOTUM Frame_Shift_Del p.G235Afs*6 0.31 TCGA-HU-A4H3-01 17 80044378 80044378 G A FASN Missense_Mutation p.P1162S 0.30 tolerated(0.16) benign(0.003) TCGA-HU-A4H3-01 17 80046321 80046321 G A FASN Silent p.A846A 0.30 TCGA-HU-A4H3-01 17 80708494 80708494 C T FN3K Missense_Mutation p.R265W 0.30 deleterious(0.01) possibly_damaging(0.67) TCGA-HU-A4H3-01 17 80721910 80721911 - T TBCD Frame_Shift_Ins p.K104* 0.45 TCGA-HU-A4H3-01 17 8093038 8093038 C G C17orf59 Missense_Mutation p.E141Q 0.36 tolerated_low_confidence(0.47) benign(0.001) TCGA-HU-A4H3-01 17 8370438 8370438 C T NDEL1 3'UTR 0.17 TCGA-HU-A4H3-01 18 11884395 11884395 C T MPPE1 3'UTR 0.28 TCGA-HU-A4H3-01 18 18629104 18629105 - A ROCK1 Frame_Shift_Ins p.W122Lfs*25 0.32 TCGA-HU-A4H3-01 18 33077862 33077862 C - INO80C 5'UTR 0.27 TCGA-HU-A4H3-01 18 43207048 43207048 A G SLC14A2 Missense_Mutation p.T153A 0.14 tolerated(1) benign(0.004) TCGA-HU-A4H3-01 18 45395727 45395727 T A SMAD2 Missense_Mutation p.D136V 0.31 deleterious(0.01) benign(0.33) TCGA-HU-A4H3-01 18 56002750 56002750 C T NEDD4L Missense_Mutation p.T369M 0.32 deleterious(0.04) possibly_damaging(0.707) TCGA-HU-A4H3-01 18 56936212 56936212 A T RAX 3'UTR 0.10 TCGA-HU-A4H3-01 18 61654234 61654234 C A SERPINB8 Missense_Mutation p.L283I 0.30 deleterious(0) probably_damaging(0.989) TCGA-HU-A4H3-01 18 66367694 66367695 TA - TMX3 Nonsense_Mutation p.Y113* 0.27 TCGA-HU-A4H3-01 18 7043243 7043243 A G LAMA1 Missense_Mutation p.Y380H 0.07 deleterious(0.02) probably_damaging(0.988) TCGA-HU-A4H3-01 18 74153390 74153390 G A ZNF516 Missense_Mutation p.R541C 0.24 tolerated(0.05) possibly_damaging(0.72) TCGA-HU-A4H3-01 18 74606996 74606996 G A ZNF236 Missense_Mutation p.R480H 0.36 deleterious(0) possibly_damaging(0.777) TCGA-HU-A4H3-01 18 8113519 8113519 G A PTPRM Missense_Mutation p.R631Q 0.39 tolerated(0.57) benign(0.019) TCGA-HU-A4H3-01 18 8825585 8825585 G A SOGA2 Silent p.S1359S 0.42 TCGA-HU-A4H3-01 19 10078753 10078753 A G COL5A3 Silent p.G1439G 0.32 TCGA-HU-A4H3-01 19 10224725 10224725 G A PPAN-P2RY11 Missense_Mutation p.A566T 0.31 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-HU-A4H3-01 19 10368989 10368989 C T MRPL4 Silent p.T179T 0.33 TCGA-HU-A4H3-01 19 10404979 10404979 G A ICAM5 Missense_Mutation p.V659I 0.32 tolerated(0.23) benign(0.002) TCGA-HU-A4H3-01 19 11323941 11323941 G A DOCK6 Nonsense_Mutation p.R1468* 0.35 TCGA-HU-A4H3-01 19 11687262 11687262 G A ACP5 Silent p.D177D 0.30 TCGA-HU-A4H3-01 19 11979027 11979027 G A ZNF439 Silent p.P381P 0.54 TCGA-HU-A4H3-01 19 12739129 12739129 C T ZNF791 Silent p.H262H 0.36 TCGA-HU-A4H3-01 19 12759984 12759984 C - MAN2B1 Frame_Shift_Del p.G801Afs*4 0.23 TCGA-HU-A4H3-01 19 12813689 12813689 C T TNPO2 Silent p.L751L 0.17 TCGA-HU-A4H3-01 19 1430254 1430254 C - DAZAP1 Frame_Shift_Del p.P257Rfs*78 0.29 TCGA-HU-A4H3-01 19 1581156 1581156 G A MBD3 Silent p.P204P 0.21 TCGA-HU-A4H3-01 19 16024639 16024639 G A CYP4F11 Missense_Mutation p.P493L 0.07 tolerated(0.06) benign(0.262) TCGA-HU-A4H3-01 19 1627405 1627405 C T TCF3 Missense_Mutation p.A107T 0.19 tolerated(0.15) benign(0.021) TCGA-HU-A4H3-01 19 16613907 16613907 C A C19orf44 Missense_Mutation p.P264H 0.22 deleterious(0.01) probably_damaging(0.969) TCGA-HU-A4H3-01 19 16688494 16688494 C T CTC-429P9.4 Splice_Site 0.38 TCGA-HU-A4H3-01 19 16962273 16962273 C T SIN3B Silent p.H259H 0.28 TCGA-HU-A4H3-01 19 17081703 17081703 G - CPAMD8 Frame_Shift_Del p.R785Efs*32 0.28 TCGA-HU-A4H3-01 19 17441906 17441906 C A ANO8 Missense_Mutation p.E274D 0.26 tolerated(0.2) benign(0.18) TCGA-HU-A4H3-01 19 17611178 17611178 G A SLC27A1 Missense_Mutation p.R433Q 0.25 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H3-01 19 19245695 19245695 G A TMEM161A Missense_Mutation p.A2V 0.50 deleterious(0) unknown(0) TCGA-HU-A4H3-01 19 20727464 20727464 G A ZNF737 Silent p.G515G 0.27 TCGA-HU-A4H3-01 19 21948556 21948556 C A ZNF100 Missense_Mutation p.K12N 0.26 tolerated_low_confidence(0.14) possibly_damaging(0.456) TCGA-HU-A4H3-01 19 22940057 22940057 G T ZNF99 3'Flank 0.27 TCGA-HU-A4H3-01 19 23927980 23927980 T - ZNF681 Frame_Shift_Del p.G125Efs*24 0.24 TCGA-HU-A4H3-01 19 31769223 31769223 G A TSHZ3 Silent p.G492G 0.35 TCGA-HU-A4H3-01 19 33076813 33076813 G T PDCD5 Missense_Mutation p.K86N 0.24 deleterious(0) benign(0.137) TCGA-HU-A4H3-01 19 33464096 33464096 A G C19orf40 5'UTR 0.30 TCGA-HU-A4H3-01 19 34292140 34292140 C - KCTD15 Frame_Shift_Del p.L47Cfs*36 0.29 TCGA-HU-A4H3-01 19 34922769 34922769 G A UBA2 Missense_Mutation p.A76T 0.34 deleterious(0) probably_damaging(0.998) TCGA-HU-A4H3-01 19 3542859 3542859 G - MFSD12 Frame_Shift_Del p.L513Wfs*30 0.21 TCGA-HU-A4H3-01 19 3547998 3547998 C T MFSD12 Missense_Mutation p.A229T 0.53 benign(0.107) TCGA-HU-A4H3-01 19 36214714 36214714 G - KMT2B Frame_Shift_Del p.A1049Rfs*133 0.33 TCGA-HU-A4H3-01 19 36215971 36215971 G A KMT2B Missense_Mutation p.V1171I 0.09 possibly_damaging(0.796) TCGA-HU-A4H3-01 19 36218423 36218423 G A KMT2B Nonsense_Mutation p.W1401* 0.32 TCGA-HU-A4H3-01 19 36228995 36228995 A G KMT2B Missense_Mutation p.K2592R 0.21 possibly_damaging(0.756) TCGA-HU-A4H3-01 19 36430697 36430697 G A LRFN3 Missense_Mutation p.E124K 0.44 tolerated(0.6) benign(0.227) TCGA-HU-A4H3-01 19 37854267 37854267 C T HKR1 Missense_Mutation p.P524S 0.33 deleterious(0.04) probably_damaging(0.92) TCGA-HU-A4H3-01 19 38573387 38573387 C T SIPA1L3 Silent p.G394G 0.48 TCGA-HU-A4H3-01 19 38850136 38850136 T G CATSPERG Missense_Mutation p.L508R 0.21 deleterious(0) possibly_damaging(0.883) TCGA-HU-A4H3-01 19 38948905 38948905 G A RYR1 Missense_Mutation p.G714S 0.34 probably_damaging(0.937) TCGA-HU-A4H3-01 19 39219655 39219655 G A ACTN4 Missense_Mutation p.R813H 0.32 deleterious(0.04) probably_damaging(0.969) TCGA-HU-A4H3-01 19 39691081 39691081 C - NCCRP1 Frame_Shift_Del p.R217Efs*48 0.29 TCGA-HU-A4H3-01 19 39914135 39914135 C T PLEKHG2 Missense_Mutation p.A814V 0.44 tolerated_low_confidence(0.06) benign(0.084) TCGA-HU-A4H3-01 19 40316612 40316612 G - DYRK1B Frame_Shift_Del p.Q545Sfs*19 0.27 TCGA-HU-A4H3-01 19 40325193 40325193 G - FBL Frame_Shift_Del p.K318Rfs*2 0.28 TCGA-HU-A4H3-01 19 40899951 40899951 C T PRX Silent p.R1436R 0.28 TCGA-HU-A4H3-01 19 41128322 41128322 G A LTBP4 Silent p.S1144S 0.31 TCGA-HU-A4H3-01 19 41749584 41749584 C A AXL Silent p.S503S 0.30 TCGA-HU-A4H3-01 19 41808818 41808818 G - HNRNPUL1 Frame_Shift_Del p.G647Efs*268 0.27 TCGA-HU-A4H3-01 19 41828591 41828591 G A CCDC97 Missense_Mutation p.A335T 0.25 deleterious(0.01) unknown(0) TCGA-HU-A4H3-01 19 42492119 42492119 G A ATP1A3 Missense_Mutation p.A122V 0.40 tolerated(0.5) benign(0.005) TCGA-HU-A4H3-01 19 42853697 42853697 G T MEGF8 Missense_Mutation p.R715L 0.43 tolerated(0.41) benign(0.001) TCGA-HU-A4H3-01 19 42857626 42857626 G - MEGF8 Frame_Shift_Del p.E1122Sfs*150 0.26 TCGA-HU-A4H3-01 19 43430061 43430061 A G PSG7 Silent p.N369N 0.27 TCGA-HU-A4H3-01 19 44466912 44466912 G A ZNF221 Missense_Mutation p.G12R 0.31 tolerated_low_confidence(0.25) probably_damaging(0.979) TCGA-HU-A4H3-01 19 4446878 4446879 - A UBXN6 Frame_Shift_Ins p.E219* 0.38 TCGA-HU-A4H3-01 19 44732508 44732508 T - ZNF227 Intron 0.43 TCGA-HU-A4H3-01 19 4512048 4512048 C T PLIN4 Missense_Mutation p.V628M 0.38 tolerated(0.61) benign(0.005) TCGA-HU-A4H3-01 19 45412438 45412438 C T APOE Silent p.A295A 0.27 TCGA-HU-A4H3-01 19 46623563 46623563 G A IGFL3 3'UTR 0.39 TCGA-HU-A4H3-01 19 48229320 48229320 G A EHD2 Missense_Mutation p.V252I 0.40 deleterious(0) probably_damaging(0.998) TCGA-HU-A4H3-01 19 49118647 49118647 G A RPL18 Silent p.S183S 0.26 TCGA-HU-A4H3-01 19 49136599 49136599 A G DBP Intron 0.30 TCGA-HU-A4H3-01 19 49299906 49299906 C T BCAT2 Missense_Mutation p.V332M 0.28 tolerated(0.07) possibly_damaging(0.871) TCGA-HU-A4H3-01 19 49494662 49494662 C A GYS1 Missense_Mutation p.G66V 0.36 deleterious(0) possibly_damaging(0.831) TCGA-HU-A4H3-01 19 49558253 49558254 - CAG CGB7 In_Frame_Ins p.L13dup 0.24 TCGA-HU-A4H3-01 19 49671926 49671926 G - TRPM4 Frame_Shift_Del p.G245Afs*33 0.37 TCGA-HU-A4H3-01 19 49949891 49949891 G - PIH1D1 Frame_Shift_Del p.Q250Sfs*6 0.31 TCGA-HU-A4H3-01 19 50099705 50099705 C T PRR12 Missense_Mutation p.R705C 0.28 possibly_damaging(0.835) TCGA-HU-A4H3-01 19 50357780 50357780 G A PTOV1 Missense_Mutation p.G97S 0.38 deleterious(0.02) probably_damaging(1) TCGA-HU-A4H3-01 19 52249510 52249510 G A FPR1 Silent p.V246V 0.37 TCGA-HU-A4H3-01 19 54395893 54395893 G T PRKCG Missense_Mutation p.G273C 0.28 tolerated(0.05) probably_damaging(0.992) TCGA-HU-A4H3-01 19 54417817 54417817 C T CACNG7 Missense_Mutation p.T87M 0.20 deleterious(0.03) possibly_damaging(0.893) TCGA-HU-A4H3-01 19 54445692 54445692 C A CACNG7 3'UTR 0.35 TCGA-HU-A4H3-01 19 55087402 55087402 G T LILRA2 Missense_Mutation p.G361C 0.32 deleterious(0) possibly_damaging(0.608) TCGA-HU-A4H3-01 19 55144041 55144041 G A LILRB1 Missense_Mutation p.R263H 0.05 tolerated(0.37) benign(0.002) TCGA-HU-A4H3-01 19 56413493 56413493 G A NLRP13 Silent p.H899H 0.38 TCGA-HU-A4H3-01 19 5705847 5705847 T C LONP1 Missense_Mutation p.M435V 0.32 tolerated(0.18) benign(0.027) TCGA-HU-A4H3-01 19 57286450 57286450 G A ZIM2 Missense_Mutation p.A397V 0.34 tolerated(0.06) benign(0.048) TCGA-HU-A4H3-01 19 57910087 57910087 C A ZNF548 Missense_Mutation p.H156Q 0.37 tolerated(0.17) benign(0.101) TCGA-HU-A4H3-01 19 58189949 58189949 C T ZSCAN4 Silent p.H326H 0.22 TCGA-HU-A4H3-01 19 58198694 58198694 A G ZNF551 Missense_Mutation p.I351V 0.41 tolerated(0.43) benign(0.35) TCGA-HU-A4H3-01 19 58319557 58319557 T G ZNF552 Missense_Mutation p.K359Q 0.35 deleterious(0) probably_damaging(0.994) TCGA-HU-A4H3-01 19 6042053 6042053 A G RFX2 Splice_Site p.X87_splice 0.22 TCGA-HU-A4H3-01 19 6746467 6746467 T C TRIP10 Missense_Mutation p.V330A 0.28 tolerated(0.64) benign(0.061) TCGA-HU-A4H3-01 19 6750379 6750380 - C TRIP10 Frame_Shift_Ins p.A438Rfs*2 0.40 TCGA-HU-A4H3-01 19 7999057 7999057 T C TIMM44 Missense_Mutation p.K154E 0.27 deleterious(0.03) benign(0.039) TCGA-HU-A4H3-01 19 8620591 8620591 G A MYO1F Silent p.D31D 0.32 TCGA-HU-A4H3-01 19 873537 873537 A C MED16 Missense_Mutation p.L606R 0.29 deleterious(0) probably_damaging(0.928) TCGA-HU-A4H3-01 19 9056201 9056201 T G MUC16 Missense_Mutation p.Q10415H 0.40 benign(0.027) TCGA-HU-A4H3-01 19 9087799 9087799 G T MUC16 Missense_Mutation p.S1339Y 0.17 unknown(0) TCGA-HU-A4H3-01 1 10155592 10155592 G A UBE4B Silent p.T95T 0.22 TCGA-HU-A4H3-01 1 10190819 10190819 A - UBE4B Frame_Shift_Del p.N621Tfs*13 0.25 TCGA-HU-A4H3-01 1 10384888 10384888 C T KIF1B Silent p.S824S 0.29 TCGA-HU-A4H3-01 1 10399859 10399859 C T KIF1B Missense_Mutation p.T1106M 0.34 deleterious(0) probably_damaging(0.998) TCGA-HU-A4H3-01 1 104112680 104112680 G A AMY2B Intron 0.32 TCGA-HU-A4H3-01 1 109741246 109741246 C T KIAA1324 Silent p.R817R 0.45 TCGA-HU-A4H3-01 1 110300580 110300580 T - EPS8L3 Frame_Shift_Del p.N274Tfs*33 0.42 TCGA-HU-A4H3-01 1 110301862 110301862 C A EPS8L3 Missense_Mutation p.G135W 0.34 deleterious(0) probably_damaging(0.997) TCGA-HU-A4H3-01 1 110551702 110551702 C T AHCYL1 Missense_Mutation p.T56I 0.29 deleterious_low_confidence(0) benign(0.15) TCGA-HU-A4H3-01 1 110754325 110754325 C T KCNC4 Silent p.P68P 0.29 TCGA-HU-A4H3-01 1 110944061 110944061 C T LAMTOR5 3'UTR 0.38 TCGA-HU-A4H3-01 1 1152870 1152870 G A SDF4 3'UTR 0.38 TCGA-HU-A4H3-01 1 11769435 11769435 G A DRAXIN Silent p.A185A 0.32 TCGA-HU-A4H3-01 1 1290110 1290110 G - MXRA8 Frame_Shift_Del p.R301Gfs*107 0.49 TCGA-HU-A4H3-01 1 1459758 1459758 G A ATAD3A Missense_Mutation p.A447T 0.29 deleterious(0) probably_damaging(0.994) TCGA-HU-A4H3-01 1 149857803 149857803 C T HIST2H2BE 3'UTR 0.35 TCGA-HU-A4H3-01 1 149916658 149916658 C T OTUD7B Missense_Mutation p.G544S 0.38 tolerated(0.18) benign(0.103) TCGA-HU-A4H3-01 1 151373273 151373273 C T PSMB4 Silent p.A176A 0.30 TCGA-HU-A4H3-01 1 153740271 153740271 C A INTS3 Missense_Mutation p.L738M 0.40 tolerated(0.06) probably_damaging(0.962) TCGA-HU-A4H3-01 1 153785764 153785764 G A GATAD2B Silent p.L461L 0.13 TCGA-HU-A4H3-01 1 155340428 155340428 C G ASH1L Missense_Mutation p.E2185Q 0.08 deleterious_low_confidence(0.02) probably_damaging(0.979) TCGA-HU-A4H3-01 1 155716601 155716601 C A GON4L 3'Flank 0.08 TCGA-HU-A4H3-01 1 155735282 155735282 C T GON4L Missense_Mutation p.E1328K 0.31 deleterious_low_confidence(0.01) probably_damaging(0.969) TCGA-HU-A4H3-01 1 156756452 156756452 T C PRCC Missense_Mutation p.L190P 0.34 deleterious(0.03) probably_damaging(0.959) TCGA-HU-A4H3-01 1 157490981 157490981 G - FCRL5 Frame_Shift_Del p.L781* 0.24 TCGA-HU-A4H3-01 1 158325917 158325917 G A CD1E Intron 0.25 TCGA-HU-A4H3-01 1 158639341 158639341 G A SPTA1 Missense_Mutation p.R564W 0.27 tolerated(0.11) probably_damaging(0.982) TCGA-HU-A4H3-01 1 160121751 160121751 G A ATP1A4 5'UTR 0.29 TCGA-HU-A4H3-01 1 161090341 161090342 CA - NIT1 Frame_Shift_Del p.Q258Vfs*6 0.29 TCGA-HU-A4H3-01 1 16342044 16342044 G A HSPB7 3'UTR 0.15 TCGA-HU-A4H3-01 1 16558758 16558758 G A RSG1 Missense_Mutation p.R188W 0.32 deleterious(0) possibly_damaging(0.677) TCGA-HU-A4H3-01 1 167096269 167096269 G A DUSP27 Missense_Mutation p.R634Q 0.37 deleterious(0) benign(0.295) TCGA-HU-A4H3-01 1 167778932 167778932 C T ADCY10 Missense_Mutation p.V1606M 0.24 tolerated(0.06) benign(0.009) TCGA-HU-A4H3-01 1 173516835 173516835 A G SLC9C2 Missense_Mutation p.I517T 0.31 deleterious(0.05) possibly_damaging(0.859) TCGA-HU-A4H3-01 1 176762727 176762727 C T PAPPA2 Silent p.P1684P 0.32 TCGA-HU-A4H3-01 1 177133715 177133715 A G ASTN1 Missense_Mutation p.L33P 0.45 tolerated_low_confidence(0.22) benign(0.176) TCGA-HU-A4H3-01 1 197069737 197069737 A G ASPM Missense_Mutation p.Y2882H 0.17 tolerated(0.44) benign(0.043) TCGA-HU-A4H3-01 1 200635327 200635327 T G DDX59 Missense_Mutation p.Q181P 0.46 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H3-01 1 201252870 201252870 T C PKP1 Missense_Mutation p.C14R 0.35 tolerated(0.05) probably_damaging(0.959) TCGA-HU-A4H3-01 1 204956505 204956505 C A NFASC Intron 0.36 TCGA-HU-A4H3-01 1 205052614 205052614 A - TMEM81 3'UTR 0.11 TCGA-HU-A4H3-01 1 205238321 205238321 C T TMCC2 Missense_Mutation p.R331C 0.38 deleterious(0.02) probably_damaging(0.945) TCGA-HU-A4H3-01 1 206758727 206758727 G A RASSF5 Intron 0.09 TCGA-HU-A4H3-01 1 209807792 209807792 C G LAMB3 Missense_Mutation p.K188N 0.23 deleterious(0.01) possibly_damaging(0.857) TCGA-HU-A4H3-01 1 215848449 215848449 T C USH2A Silent p.P4268P 0.31 TCGA-HU-A4H3-01 1 22033377 22033387 TATATTTGGAA ATATATTTGG USP48 Intron 0.23 TCGA-HU-A4H3-01 1 2235330 2235330 C T SKI Silent p.L421L 0.39 TCGA-HU-A4H3-01 1 225590948 225590948 T - LBR 3'UTR 0.24 TCGA-HU-A4H3-01 1 225591060 225591060 G A LBR Missense_Mutation p.A598V 0.38 deleterious(0.04) probably_damaging(0.986) TCGA-HU-A4H3-01 1 227171866 227171866 T C ADCK3 Missense_Mutation p.L443P 0.41 deleterious(0) probably_damaging(0.933) TCGA-HU-A4H3-01 1 228346746 228346746 C T GJC2 Silent p.S429S 0.36 TCGA-HU-A4H3-01 1 228464704 228464704 C T OBSCN Silent p.C2562C 0.40 TCGA-HU-A4H3-01 1 228560646 228560646 G C OBSCN Missense_Mutation p.W8346C 0.18 possibly_damaging(0.613) TCGA-HU-A4H3-01 1 229772726 229772726 A - URB2 Frame_Shift_Del p.I791Yfs*22 0.28 TCGA-HU-A4H3-01 1 22987798 22987798 C T C1QB Silent p.T227T 0.21 TCGA-HU-A4H3-01 1 233120211 233120211 G A PCNXL2 Missense_Mutation p.P2085S 0.24 tolerated_low_confidence(0.15) benign(0.007) TCGA-HU-A4H3-01 1 233514948 233514948 G T MLK4 Silent p.S732S 0.33 TCGA-HU-A4H3-01 1 235613601 235613603 GAG - B3GALNT2 In_Frame_Del p.P474del 0.38 TCGA-HU-A4H3-01 1 236925859 236925859 G A ACTN2 Silent p.V875V 0.25 TCGA-HU-A4H3-01 1 241767800 241767801 - A OPN3 Frame_Shift_Ins p.S152Ffs*99 0.34 TCGA-HU-A4H3-01 1 242162342 242162343 - A MAP1LC3C 5'UTR 0.37 TCGA-HU-A4H3-01 1 24400729 24400729 G A MYOM3 Silent p.L963L 0.30 TCGA-HU-A4H3-01 1 244855310 244855310 A G DESI2 Silent p.S113S 0.30 TCGA-HU-A4H3-01 1 245006587 245006587 T - COX20 3'UTR 0.38 TCGA-HU-A4H3-01 1 246810999 246810999 C T CNST Missense_Mutation p.A499V 0.28 tolerated(0.14) benign(0.051) TCGA-HU-A4H3-01 1 247025328 247025328 G A AHCTF1 Missense_Mutation p.P1232L 0.24 deleterious(0) probably_damaging(1) TCGA-HU-A4H3-01 1 247492893 247492894 - G ZNF496 5'UTR 0.27 TCGA-HU-A4H3-01 1 248028188 248028188 C T TRIM58 Missense_Mutation p.A233V 0.58 tolerated(0.45) benign(0.006) TCGA-HU-A4H3-01 1 248084594 248084594 G A OR2T8 Missense_Mutation p.R92H 0.35 tolerated(0.4) benign(0.172) TCGA-HU-A4H3-01 1 248436842 248436842 C T OR2T33 Missense_Mutation p.R92H 0.23 tolerated(0.46) benign(0.146) TCGA-HU-A4H3-01 1 2523063 2523063 C T MMEL1 Missense_Mutation p.G725R 0.33 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H3-01 1 27105931 27105931 G - ARID1A Frame_Shift_Del p.D1850Tfs*33 0.29 TCGA-HU-A4H3-01 1 27238397 27238397 C T NR0B2 Missense_Mutation p.R238H 0.22 deleterious(0.04) benign(0.262) TCGA-HU-A4H3-01 1 27736343 27736343 G A WASF2 Silent p.P394P 0.39 TCGA-HU-A4H3-01 1 28862888 28862888 C T RCC1 Missense_Mutation p.S342L 0.29 deleterious(0.05) benign(0.012) TCGA-HU-A4H3-01 1 32672879 32672879 G A IQCC Silent p.A279A 0.28 TCGA-HU-A4H3-01 1 36215282 36215283 GA - CLSPN Frame_Shift_Del p.S720Ifs*9 0.33 TCGA-HU-A4H3-01 1 36288485 36288485 C T AGO4 Missense_Mutation p.R70W 0.37 deleterious(0) possibly_damaging(0.586) TCGA-HU-A4H3-01 1 36809855 36809855 G A STK40 Silent p.Y250Y 0.35 TCGA-HU-A4H3-01 1 38027698 38027698 C T DNALI1 Missense_Mutation p.T220M 0.22 tolerated(0.1) benign(0.008) TCGA-HU-A4H3-01 1 38411462 38411462 G A INPP5B Missense_Mutation p.R40C 0.38 deleterious(0) possibly_damaging(0.876) TCGA-HU-A4H3-01 1 39988086 39988086 G A BMP8A Missense_Mutation p.G294S 0.17 tolerated(1) benign(0.024) TCGA-HU-A4H3-01 1 46086576 46086576 T C CCDC17 Missense_Mutation p.Q533R 0.43 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H3-01 1 46498028 46498028 C T MAST2 Silent p.R1122R 0.33 TCGA-HU-A4H3-01 1 46685377 46685377 C A LURAP1 Missense_Mutation p.L69M 0.25 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H3-01 1 47280902 47280902 C T CYP4B1 Missense_Mutation p.R347C 0.17 tolerated(0.05) benign(0.006) TCGA-HU-A4H3-01 1 52385787 52385787 C A RAB3B Splice_Site p.X158_splice 0.21 TCGA-HU-A4H3-01 1 55075225 55075225 G A FAM151A Nonsense_Mutation p.Q492* 0.36 TCGA-HU-A4H3-01 1 6533171 6533171 T C PLEKHG5 Missense_Mutation p.R366G 0.45 deleterious(0) probably_damaging(0.943) TCGA-HU-A4H3-01 1 66102677 66102677 G T LEPR Missense_Mutation p.K1159N 0.26 deleterious(0.04) possibly_damaging(0.807) TCGA-HU-A4H3-01 1 6636499 6636499 C T TAS1R1 Missense_Mutation p.H429Y 0.23 deleterious(0.01) benign(0.005) TCGA-HU-A4H3-01 1 68512858 68512858 C A DIRAS3 Silent p.V41V 0.32 TCGA-HU-A4H3-01 1 78414859 78414859 T G FUBP1 Missense_Mutation p.Q636P 0.25 tolerated_low_confidence(0.3) unknown(0) TCGA-HU-A4H3-01 1 7913491 7913491 T - UTS2 Frame_Shift_Del p.M1? 0.30 TCGA-HU-A4H3-01 1 7998254 7998254 T - TNFRSF9 Frame_Shift_Del p.G116Vfs*33 0.35 TCGA-HU-A4H3-01 1 8074255 8074255 T - ERRFI1 Frame_Shift_Del p.N135Tfs*40 0.30 TCGA-HU-A4H3-01 1 8415661 8415661 T G RERE Splice_Site p.X1496_splice 0.26 TCGA-HU-A4H3-01 1 89844152 89844152 A G GBP6 Missense_Mutation p.N202S 0.33 deleterious(0.03) possibly_damaging(0.718) TCGA-HU-A4H3-01 1 90399416 90399416 T C LRRC8D Silent p.A263A 0.13 TCGA-HU-A4H3-01 1 9067418 9067418 G T SLC2A7 Silent p.L381L 0.32 TCGA-HU-A4H3-01 1 94649826 94649827 CA - ARHGAP29 Frame_Shift_Del p.C709Wfs*7 0.15 TCGA-HU-A4H3-01 1 95357932 95357932 T - SLC44A3 Frame_Shift_Del p.F574Lfs*4 0.28 TCGA-HU-A4H3-01 20 10629248 10629248 G A JAG1 Silent p.I506I 0.42 TCGA-HU-A4H3-01 20 1291095 1291095 G A SDCBP2 Missense_Mutation p.P290L 0.28 deleterious(0.02) probably_damaging(1) TCGA-HU-A4H3-01 20 1584702 1584702 G - SIRPB1 Intron 0.36 TCGA-HU-A4H3-01 20 16359706 16359706 G A KIF16B Missense_Mutation p.R981C 0.28 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-HU-A4H3-01 20 19981452 19981453 - A RIN2 Frame_Shift_Ins p.I905Nfs*80 0.25 TCGA-HU-A4H3-01 20 24938043 24938043 C T CST7 Missense_Mutation p.T64M 0.26 deleterious(0) probably_damaging(0.977) TCGA-HU-A4H3-01 20 29976953 29976953 G A DEFB119 Missense_Mutation p.R48W 0.45 deleterious(0) probably_damaging(0.968) TCGA-HU-A4H3-01 20 34025211 34025211 G - GDF5 Frame_Shift_Del p.I167Sfs*26 0.33 TCGA-HU-A4H3-01 20 34611560 34611560 G A CNBD2 Missense_Mutation p.D432N 0.36 deleterious(0.03) probably_damaging(0.998) TCGA-HU-A4H3-01 20 3540127 3540127 C T ATRN Silent p.Y400Y 0.34 TCGA-HU-A4H3-01 20 35580127 35580127 G A SAMHD1 5'UTR 0.37 TCGA-HU-A4H3-01 20 37168534 37168534 T C RALGAPB Missense_Mutation p.M832T 0.23 tolerated(1) benign(0.046) TCGA-HU-A4H3-01 20 37464806 37464806 G A PPP1R16B Missense_Mutation p.D80N 0.21 deleterious(0) probably_damaging(1) TCGA-HU-A4H3-01 20 37617501 37617501 G A DHX35 Missense_Mutation p.E131K 0.35 deleterious(0.04) possibly_damaging(0.717) TCGA-HU-A4H3-01 20 39317379 39317379 G A MAFB Missense_Mutation p.R38C 0.38 deleterious(0.04) benign(0.249) TCGA-HU-A4H3-01 20 39791907 39791907 T C PLCG1 Missense_Mutation p.Y261H 0.15 tolerated(0.05) possibly_damaging(0.652) TCGA-HU-A4H3-01 20 40714411 40714411 T G PTPRT Missense_Mutation p.E1310A 0.15 tolerated(0.45) benign(0.371) TCGA-HU-A4H3-01 20 42683112 42683112 C T TOX2 Silent p.D275D 0.26 TCGA-HU-A4H3-01 20 43726361 43726361 C T KCNS1 Missense_Mutation p.R351H 0.29 deleterious(0) probably_damaging(0.967) TCGA-HU-A4H3-01 20 44167994 44167994 T C WFDC6 Missense_Mutation p.D18G 0.25 tolerated(0.52) benign(0.057) TCGA-HU-A4H3-01 20 44586250 44586250 C T ZNF335 Missense_Mutation p.R806Q 0.21 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H3-01 20 47317421 47317421 A G PREX1 Missense_Mutation p.S263P 0.29 tolerated(0.16) possibly_damaging(0.864) TCGA-HU-A4H3-01 20 50273655 50273655 G A ATP9A Missense_Mutation p.T443M 0.19 tolerated(0.13) benign(0.425) TCGA-HU-A4H3-01 20 50406893 50406893 G A SALL4 Missense_Mutation p.T710M 0.46 tolerated(0.22) benign(0.002) TCGA-HU-A4H3-01 20 5167481 5167481 G A CDS2 Missense_Mutation p.G326D 0.32 tolerated(0.19) benign(0.281) TCGA-HU-A4H3-01 20 52645067 52645067 T C BCAS1 Missense_Mutation p.K196R 0.32 tolerated(0.76) benign(0.078) TCGA-HU-A4H3-01 20 54970790 54970790 C T CSTF1 Intron 0.33 TCGA-HU-A4H3-01 20 60498761 60498761 A C CDH4 Silent p.R543R 0.34 TCGA-HU-A4H3-01 20 60704949 60704949 G A LSM14B Missense_Mutation p.G179D 0.33 tolerated(0.17) benign(0.185) TCGA-HU-A4H3-01 20 61511147 61511147 G A DIDO1 Missense_Mutation p.A2054V 0.34 benign(0.089) TCGA-HU-A4H3-01 20 61833843 61833843 A G YTHDF1 Silent p.D483D 0.41 TCGA-HU-A4H3-01 20 62187213 62187213 C - C20orf195 Frame_Shift_Del p.R67Afs*45 0.29 TCGA-HU-A4H3-01 20 62729906 62729906 G A OPRL1 Silent p.G289G 0.34 TCGA-HU-A4H3-01 20 9352960 9352960 T - PLCB4 Frame_Shift_Del p.I199Mfs*14 0.23 TCGA-HU-A4H3-01 21 11049587 11049587 G T BAGE2 RNA 0.04 TCGA-HU-A4H3-01 21 16339973 16339973 C T NRIP1 Missense_Mutation p.A181T 0.48 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H3-01 21 17205809 17205809 G A USP25 Silent p.L712L 0.72 TCGA-HU-A4H3-01 21 28214913 28214913 G A ADAMTS1 Silent p.H274H 0.46 TCGA-HU-A4H3-01 21 33370854 33370854 G A HUNK Missense_Mutation p.R501H 0.55 tolerated_low_confidence(0.1) possibly_damaging(0.655) TCGA-HU-A4H3-01 21 34997046 34997046 C T CRYZL1 Silent p.E29E 0.66 TCGA-HU-A4H3-01 21 43691237 43691237 C T ABCG1 Missense_Mutation p.A115V 0.39 deleterious(0.01) benign(0.323) TCGA-HU-A4H3-01 21 45217248 45217248 G T RRP1 Intron 0.43 TCGA-HU-A4H3-01 21 46705687 46705687 G A POFUT2 Silent p.D96D 0.54 TCGA-HU-A4H3-01 21 47419132 47419132 G T COL6A1 Missense_Mutation p.Q580H 0.38 tolerated(0.41) possibly_damaging(0.549) TCGA-HU-A4H3-01 21 48078788 48078788 G A PRMT2 Silent p.V262V 0.52 TCGA-HU-A4H3-01 22 20094884 20094884 G A DGCR8 Missense_Mutation p.R696H 0.33 deleterious(0) probably_damaging(0.995) TCGA-HU-A4H3-01 22 20131022 20131022 C A ZDHHC8 Silent p.A623A 0.53 TCGA-HU-A4H3-01 22 23438488 23438488 G - GNAZ Frame_Shift_Del p.Q205Rfs*29 0.36 TCGA-HU-A4H3-01 22 24175857 24175859 AGA - SMARCB1 In_Frame_Del p.K364del 0.34 TCGA-HU-A4H3-01 22 24584203 24584203 C T SUSD2 Silent p.Y784Y 0.38 TCGA-HU-A4H3-01 22 26193919 26193919 G T MYO18B Splice_Site p.X793_splice 0.22 TCGA-HU-A4H3-01 22 30403965 30403965 G A MTMR3 Missense_Mutation p.R318H 0.07 deleterious(0) probably_damaging(1) TCGA-HU-A4H3-01 22 30640813 30640815 GTT - LIF In_Frame_Del p.N43del 0.37 TCGA-HU-A4H3-01 22 31003311 31003311 C G TCN2 5'UTR 0.29 TCGA-HU-A4H3-01 22 31496972 31496972 G A SMTN Intron 0.36 TCGA-HU-A4H3-01 22 38131430 38131430 C A TRIOBP Missense_Mutation p.P1696H 0.33 deleterious_low_confidence(0) probably_damaging(0.97) TCGA-HU-A4H3-01 22 38476959 38476959 C T SLC16A8 Silent p.A362A 0.44 TCGA-HU-A4H3-01 22 38621509 38621509 G A TMEM184B Missense_Mutation p.R237W 0.32 deleterious(0) probably_damaging(0.93) TCGA-HU-A4H3-01 22 42262951 42262951 A G SREBF2 Missense_Mutation p.S69G 0.39 tolerated(0.35) benign(0) TCGA-HU-A4H3-01 22 43435697 43435697 A T TTLL1 3'UTR 0.31 TCGA-HU-A4H3-01 22 43610096 43610096 C A SCUBE1 Missense_Mutation p.G685C 0.20 deleterious(0) probably_damaging(1) TCGA-HU-A4H3-01 22 46345856 46345856 C T WNT7B Missense_Mutation p.R81H 0.27 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H3-01 22 50297834 50297834 C T ALG12 Missense_Mutation p.A411T 0.41 benign(0.048) TCGA-HU-A4H3-01 2 101656773 101656773 G A TBC1D8 Missense_Mutation p.A301V 0.38 tolerated(0.06) benign(0.014) TCGA-HU-A4H3-01 2 102781301 102781301 C T IL1R1 Silent p.P43P 0.28 TCGA-HU-A4H3-01 2 102955439 102955439 A G IL1RL1 Silent p.S68S 0.28 TCGA-HU-A4H3-01 2 103125345 103125345 A - SLC9A4 Frame_Shift_Del p.T483Pfs*15 0.23 TCGA-HU-A4H3-01 2 10712070 10712070 C A NOL10 3'UTR 0.56 TCGA-HU-A4H3-01 2 109379767 109379767 G A RANBP2 Silent p.P924P 0.36 TCGA-HU-A4H3-01 2 113496382 113496382 A - CKAP2L 3'UTR 0.21 TCGA-HU-A4H3-01 2 119604484 119604484 G A EN1 Missense_Mutation p.A87V 0.52 tolerated_low_confidence(0.44) unknown(0) TCGA-HU-A4H3-01 2 128252455 128252455 G A IWS1 Missense_Mutation p.L598F 0.27 deleterious(0) probably_damaging(0.911) TCGA-HU-A4H3-01 2 128775465 128775465 G T SAP130 Missense_Mutation p.S72Y 0.40 deleterious_low_confidence(0.03) possibly_damaging(0.747) TCGA-HU-A4H3-01 2 130949500 130949501 AG - TUBA3E Frame_Shift_Del p.S419* 0.34 TCGA-HU-A4H3-01 2 131130739 131130739 T C PTPN18 Missense_Mutation p.L442P 0.42 deleterious(0.03) possibly_damaging(0.723) TCGA-HU-A4H3-01 2 141458136 141458136 C T LRP1B Missense_Mutation p.R2161Q 0.32 benign(0.238) TCGA-HU-A4H3-01 2 152273371 152273371 G A RIF1 Silent p.T153T 0.20 TCGA-HU-A4H3-01 2 152318968 152318970 GAT - RIF1 In_Frame_Del p.M1119del 0.31 TCGA-HU-A4H3-01 2 155555820 155555820 G A KCNJ3 Missense_Mutation p.G178D 0.24 deleterious(0) probably_damaging(1) TCGA-HU-A4H3-01 2 157186121 157186121 C T NR4A2 Missense_Mutation p.R193H 0.14 tolerated(0.13) possibly_damaging(0.648) TCGA-HU-A4H3-01 2 158971760 158971760 C T UPP2 Missense_Mutation p.L167F 0.16 deleterious(0) probably_damaging(1) TCGA-HU-A4H3-01 2 159481627 159481628 - C PKP4 Frame_Shift_Ins p.T283Nfs*78 0.31 TCGA-HU-A4H3-01 2 160182228 160182228 G A BAZ2B Nonsense_Mutation p.Q2049* 0.36 TCGA-HU-A4H3-01 2 162091980 162091980 G - TANK Frame_Shift_Del p.D412Ifs*27 0.28 TCGA-HU-A4H3-01 2 166789480 166789480 T C TTC21B Intron 0.30 TCGA-HU-A4H3-01 2 167055891 167055891 T C SCN9A Missense_Mutation p.N1742S 0.21 deleterious(0.01) possibly_damaging(0.866) TCGA-HU-A4H3-01 2 167141203 167141203 A - SCN9A Frame_Shift_Del p.F578Lfs*37 0.34 TCGA-HU-A4H3-01 2 167289041 167289041 A G SCN7A Silent p.H793H 0.34 TCGA-HU-A4H3-01 2 170428529 170428530 - T FASTKD1 Frame_Shift_Ins p.T4Nfs*34 0.29 TCGA-HU-A4H3-01 2 171240258 171240259 - C MYO3B Frame_Shift_Ins p.H411Pfs*51 0.32 TCGA-HU-A4H3-01 2 178416799 178416799 A G TTC30B Silent p.T231T 0.14 TCGA-HU-A4H3-01 2 178482764 178482764 A G TTC30A Silent p.H222H 0.12 TCGA-HU-A4H3-01 2 178483324 178483324 G C TTC30A Missense_Mutation p.R36G 0.29 tolerated(0.4) benign(0) TCGA-HU-A4H3-01 2 178937033 178937033 C A PDE11A Missense_Mutation p.Q44H 0.30 tolerated_low_confidence(0.12) benign(0) TCGA-HU-A4H3-01 2 179399703 179399703 T C TTN Missense_Mutation p.E33880G 0.36 TCGA-HU-A4H3-01 2 179435692 179435692 G A TTN Missense_Mutation p.A25056V 0.28 TCGA-HU-A4H3-01 2 179543552 179543552 C A TTN Nonsense_Mutation p.E11250* 0.38 TCGA-HU-A4H3-01 2 179583588 179583588 T G TTN Missense_Mutation p.K8113N 0.33 TCGA-HU-A4H3-01 2 183606066 183606066 A - DNAJC10 Frame_Shift_Del p.N393Mfs*28 0.35 TCGA-HU-A4H3-01 2 186678350 186678350 A - FSIP2 Frame_Shift_Del p.N6726Mfs*7 0.20 TCGA-HU-A4H3-01 2 191524419 191524419 C T NAB1 Missense_Mutation p.L173F 0.31 tolerated(0.2) possibly_damaging(0.704) TCGA-HU-A4H3-01 2 191873701 191873701 C A STAT1 Missense_Mutation p.K87N 0.24 deleterious(0.02) possibly_damaging(0.547) TCGA-HU-A4H3-01 2 197185165 197185165 T G HECW2 Splice_Site p.X295_splice 0.32 TCGA-HU-A4H3-01 2 197791356 197791356 G A PGAP1 5'UTR 0.28 TCGA-HU-A4H3-01 2 201436289 201436289 A - SGOL2 Frame_Shift_Del p.K409Rfs*52 0.19 TCGA-HU-A4H3-01 2 201768475 201768475 G T NIF3L1 3'UTR 0.33 TCGA-HU-A4H3-01 2 202671427 202671427 T C CDK15 Missense_Mutation p.C14R 0.21 deleterious_low_confidence(0) benign(0.012) TCGA-HU-A4H3-01 2 206305215 206305215 A G PARD3B Missense_Mutation p.R893G 0.39 tolerated(0.25) probably_damaging(0.958) TCGA-HU-A4H3-01 2 209035783 209035783 G A C2orf80 Silent p.V153V 0.31 TCGA-HU-A4H3-01 2 214149345 214149345 T C SPAG16 Splice_Site p.X46_splice 0.26 TCGA-HU-A4H3-01 2 214149362 214149362 C T SPAG16 Intron 0.32 TCGA-HU-A4H3-01 2 216262403 216262403 G A FN1 Missense_Mutation p.P1173S 0.38 tolerated(0.18) benign(0.301) TCGA-HU-A4H3-01 2 216810377 216810377 G A MREG Nonsense_Mutation p.R143* 0.37 TCGA-HU-A4H3-01 2 218674599 218674599 G A TNS1 Silent p.I1636I 0.38 TCGA-HU-A4H3-01 2 219854948 219854948 A G CRYBA2 3'UTR 0.43 TCGA-HU-A4H3-01 2 220073044 220073044 C A ZFAND2B Silent p.T167T 0.26 TCGA-HU-A4H3-01 2 227662352 227662352 G - IRS1 Frame_Shift_Del p.P368Rfs*95 0.32 TCGA-HU-A4H3-01 2 232123796 232123796 T C ARMC9 Missense_Mutation p.L336S 0.37 deleterious(0) probably_damaging(0.986) TCGA-HU-A4H3-01 2 232458511 232458511 C T C2orf57 Silent p.G283G 0.28 TCGA-HU-A4H3-01 2 233246000 233246000 C T ALPP Missense_Mutation p.T411M 0.25 deleterious(0) probably_damaging(1) TCGA-HU-A4H3-01 2 233527580 233527580 C - EFHD1 Frame_Shift_Del p.Q126Rfs*6 0.23 TCGA-HU-A4H3-01 2 233897493 233897493 G A NEU2 Missense_Mutation p.A38T 0.46 deleterious(0.02) benign(0.4) TCGA-HU-A4H3-01 2 234627599 234627599 C T UGT1A4 Missense_Mutation p.R45W 0.28 deleterious(0.01) benign(0.029) TCGA-HU-A4H3-01 2 234652144 234652144 G T UGT1A10 Intron 0.38 TCGA-HU-A4H3-01 2 234873391 234873391 C A TRPM8 Silent p.T623T 0.19 TCGA-HU-A4H3-01 2 239092729 239092729 G A ILKAP Silent p.T186T 0.27 TCGA-HU-A4H3-01 2 240056254 240056254 G A HDAC4 Missense_Mutation p.T355M 0.47 deleterious(0.01) probably_damaging(0.999) TCGA-HU-A4H3-01 2 241621893 241621893 C T AQP12B Missense_Mutation p.G121D 0.27 deleterious(0) probably_damaging(0.998) TCGA-HU-A4H3-01 2 242004785 242004785 G A SNED1 Silent p.P928P 0.31 TCGA-HU-A4H3-01 2 25991624 25991624 T C ASXL2 Silent p.V206V 0.35 TCGA-HU-A4H3-01 2 27560874 27560874 T C GTF3C2 Missense_Mutation p.H290R 0.38 tolerated(0.3) benign(0.075) TCGA-HU-A4H3-01 2 27591960 27591960 C T EIF2B4 Missense_Mutation p.E131K 0.30 tolerated(0.06) benign(0.355) TCGA-HU-A4H3-01 2 38818748 38818748 C T HNRNPLL Missense_Mutation p.V73I 0.29 tolerated(0.17) probably_damaging(0.987) TCGA-HU-A4H3-01 2 39088771 39088771 C A DHX57 Nonsense_Mutation p.E261* 0.05 TCGA-HU-A4H3-01 2 44547361 44547361 G A SLC3A1 Silent p.S547S 0.29 TCGA-HU-A4H3-01 2 45826750 45826751 - C SRBD1 Frame_Shift_Ins p.G163Rfs*9 0.24 TCGA-HU-A4H3-01 2 51254651 51254651 T C NRXN1 Missense_Mutation p.D254G 0.25 tolerated(0.17) benign(0.219) TCGA-HU-A4H3-01 2 54023109 54023109 C A ERLEC1 Missense_Mutation p.L103I 0.47 tolerated(0.09) probably_damaging(0.987) TCGA-HU-A4H3-01 2 55561433 55561433 G A CCDC88A Nonsense_Mutation p.R842* 0.31 TCGA-HU-A4H3-01 2 55791531 55791531 T G SMEK2 Missense_Mutation p.K726N 0.35 deleterious(0.04) benign(0.121) TCGA-HU-A4H3-01 2 55808823 55808825 AAG - SMEK2 In_Frame_Del p.L415del 0.34 TCGA-HU-A4H3-01 2 6989849 6989849 G A CMPK2 3'UTR 0.41 TCGA-HU-A4H3-01 2 70392682 70392682 T - C2orf42 Frame_Shift_Del p.K410Nfs*38 0.33 TCGA-HU-A4H3-01 2 71299880 71299880 A G NAGK Silent p.S201S 0.42 TCGA-HU-A4H3-01 2 72360353 72360353 G A CYP26B1 Silent p.H315H 0.30 TCGA-HU-A4H3-01 2 74317097 74317097 A G TET3 Missense_Mutation p.M853V 0.37 deleterious(0) probably_damaging(0.994) TCGA-HU-A4H3-01 2 74689670 74689670 C A MOGS Missense_Mutation p.G416W 0.33 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-HU-A4H3-01 2 74725093 74725093 C T LBX2 Silent p.R182R 0.34 TCGA-HU-A4H3-01 2 80530804 80530804 C - LRRTM1 Frame_Shift_Del p.R48Gfs*41 0.31 TCGA-HU-A4H3-01 2 80816547 80816549 ATG - CTNNA2 In_Frame_Del p.D710del 0.29 TCGA-HU-A4H3-01 2 89459772 89459772 T C IGKV6-21 Silent p.Q5Q 0.30 TCGA-HU-A4H3-01 2 90108972 90108973 - A IGKV6D-41 Frame_Shift_Ins p.S80Ifs*18 0.14 TCGA-HU-A4H3-01 2 97166219 97166219 G A NEURL3 RNA 0.38 TCGA-HU-A4H3-01 2 97494763 97494763 C A CNNM3 Missense_Mutation p.L651M 0.22 tolerated(1) benign(0.049) TCGA-HU-A4H3-01 3 100964796 100964796 C T IMPG2 Missense_Mutation p.A465T 0.30 tolerated(0.21) benign(0.017) TCGA-HU-A4H3-01 3 114058003 114058003 G - ZBTB20 Frame_Shift_Del p.P692Lfs*43 0.22 TCGA-HU-A4H3-01 3 121828213 121828213 A - CD86 Frame_Shift_Del p.K269Nfs*63 0.25 TCGA-HU-A4H3-01 3 121981056 121981056 C T CASR Nonsense_Mutation p.R392* 0.27 TCGA-HU-A4H3-01 3 127983467 127983467 C T EEFSEC Missense_Mutation p.T210M 0.28 tolerated(0.12) benign(0.017) TCGA-HU-A4H3-01 3 12867068 12867068 G A CAND2 Missense_Mutation p.R1047Q 0.46 deleterious(0.02) probably_damaging(0.999) TCGA-HU-A4H3-01 3 128696934 128696934 C T KIAA1257 Silent p.P254P 0.29 TCGA-HU-A4H3-01 3 130377519 130377519 G T COL6A6 Splice_Site p.X1912_splice 0.31 TCGA-HU-A4H3-01 3 133475165 133475165 G A TF Silent p.K225K 0.14 TCGA-HU-A4H3-01 3 134086562 134086562 G - AMOTL2 Frame_Shift_Del p.P273Lfs*13 0.17 TCGA-HU-A4H3-01 3 135721069 135721069 A - PPP2R3A Frame_Shift_Del p.K245Nfs*6 0.26 TCGA-HU-A4H3-01 3 135871069 135871069 A G MSL2 Silent p.I218I 0.28 TCGA-HU-A4H3-01 3 139067040 139067040 A - MRPS22 Frame_Shift_Del p.M128Cfs*11 0.21 TCGA-HU-A4H3-01 3 140785540 140785540 C T SPSB4 Silent p.G198G 0.16 TCGA-HU-A4H3-01 3 142467219 142467219 A T TRPC1 Silent p.V183V 0.26 TCGA-HU-A4H3-01 3 142773947 142773948 - A U2SURP Frame_Shift_Ins p.A982Sfs*12 0.30 TCGA-HU-A4H3-01 3 151171285 151171285 G T IGSF10 Missense_Mutation p.P201H 0.17 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H3-01 3 155200527 155200527 A G PLCH1 Silent p.G1104G 0.24 TCGA-HU-A4H3-01 3 155212244 155212245 - T PLCH1 Frame_Shift_Ins p.S641Ifs*8 0.19 TCGA-HU-A4H3-01 3 156232161 156232161 C T KCNAB1 Nonsense_Mutation p.R223* 0.27 TCGA-HU-A4H3-01 3 159713213 159713213 C T IL12A Missense_Mutation p.T210I 0.14 deleterious(0.05) benign(0.057) TCGA-HU-A4H3-01 3 170216628 170216628 G A SLC7A14 Missense_Mutation p.A196V 0.20 tolerated(0.27) benign(0.21) TCGA-HU-A4H3-01 3 178546038 178546038 C T KCNMB2 Silent p.S100S 0.23 TCGA-HU-A4H3-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.23 deleterious(0.02) probably_damaging(0.959) TCGA-HU-A4H3-01 3 183884279 183884279 C T DVL3 Missense_Mutation p.R317W 0.31 deleterious(0) benign(0.334) TCGA-HU-A4H3-01 3 183908990 183908990 G A ABCF3 Missense_Mutation p.V506I 0.17 tolerated(0.41) benign(0.002) TCGA-HU-A4H3-01 3 184075423 184075423 C T CLCN2 Missense_Mutation p.A253T 0.22 deleterious(0) probably_damaging(0.971) TCGA-HU-A4H3-01 3 185978239 185978239 C - DGKG Frame_Shift_Del p.P472Lfs*5 0.20 TCGA-HU-A4H3-01 3 186395311 186395311 C A HRG Missense_Mutation p.P406H 0.18 tolerated(0.13) possibly_damaging(0.893) TCGA-HU-A4H3-01 3 192126065 192126065 C T FGF12 5'UTR 0.22 TCGA-HU-A4H3-01 3 194080887 194080887 G A LRRC15 Missense_Mutation p.R302W 0.27 deleterious(0) possibly_damaging(0.88) TCGA-HU-A4H3-01 3 194344395 194344395 G A TMEM44 Missense_Mutation p.R130W 0.17 deleterious(0) probably_damaging(0.963) TCGA-HU-A4H3-01 3 195501057 195501057 G A MUC4 Missense_Mutation p.R4355C 0.32 possibly_damaging(0.627) TCGA-HU-A4H3-01 3 197401792 197401792 A G KIAA0226 3'Flank 0.19 TCGA-HU-A4H3-01 3 23952392 23952392 C A NKIRAS1 Nonsense_Mutation p.G2* 0.37 TCGA-HU-A4H3-01 3 25638170 25638170 A - RARB 3'UTR 0.25 TCGA-HU-A4H3-01 3 26751452 26751452 A - LRRC3B Frame_Shift_Del p.N98Mfs*14 0.30 TCGA-HU-A4H3-01 3 32612171 32612171 G A DYNC1LI1 Missense_Mutation p.A31V 0.26 tolerated(0.15) possibly_damaging(0.798) TCGA-HU-A4H3-01 3 37149577 37149577 C T LRRFIP2 Missense_Mutation p.R234Q 0.29 deleterious(0.03) possibly_damaging(0.493) TCGA-HU-A4H3-01 3 38163221 38163221 G A DLEC1 Missense_Mutation p.V1657I 0.22 tolerated(0.22) benign(0.065) TCGA-HU-A4H3-01 3 39452388 39452388 G T RPSA Missense_Mutation p.Q132H 0.26 deleterious(0.01) probably_damaging(0.96) TCGA-HU-A4H3-01 3 42727728 42727728 C T KLHL40 Silent p.D206D 0.38 TCGA-HU-A4H3-01 3 42916994 42916994 T - CYP8B1 Frame_Shift_Del p.K105Nfs*4 0.24 TCGA-HU-A4H3-01 3 44795024 44795024 C T KIAA1143 Missense_Mutation p.D92N 0.36 deleterious(0.04) benign(0.038) TCGA-HU-A4H3-01 3 45136923 45136923 T C CDCP1 Missense_Mutation p.T388A 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-HU-A4H3-01 3 45965194 45965194 G A FYCO1 Missense_Mutation p.R1439C 0.39 deleterious(0) probably_damaging(1) TCGA-HU-A4H3-01 3 47453790 47453790 C T PTPN23 Missense_Mutation p.T1399M 0.35 probably_damaging(0.999) TCGA-HU-A4H3-01 3 47882645 47882645 C A DHX30 Silent p.S215S 0.40 TCGA-HU-A4H3-01 3 48698423 48698423 G A CELSR3 Missense_Mutation p.R549C 0.30 deleterious(0) probably_damaging(0.932) TCGA-HU-A4H3-01 3 49691512 49691512 C T BSN Missense_Mutation p.T1508M 0.39 unknown(0) TCGA-HU-A4H3-01 3 49899527 49899527 C T CAMKV Missense_Mutation p.G60S 0.26 tolerated(0.47) probably_damaging(1) TCGA-HU-A4H3-01 3 50231088 50231088 G A GNAT1 Silent p.S147S 0.40 TCGA-HU-A4H3-01 3 51417604 51417604 C - DOCK3 Frame_Shift_Del p.P1852Qfs*45 0.23 TCGA-HU-A4H3-01 3 51696873 51696873 G A RAD54L2 Missense_Mutation p.V1281M 0.29 tolerated_low_confidence(0.09) benign(0.014) TCGA-HU-A4H3-01 3 51895714 51895714 C T IQCF2 Intron 0.33 TCGA-HU-A4H3-01 3 52539377 52539377 C T STAB1 Missense_Mutation p.R521C 0.31 deleterious(0) probably_damaging(0.989) TCGA-HU-A4H3-01 3 52850920 52850920 C T ITIH4 Silent p.T817T 0.25 TCGA-HU-A4H3-01 3 53126559 53126559 G A RFT1 Silent p.S428S 0.33 TCGA-HU-A4H3-01 3 53906528 53906528 G A ACTR8 Silent p.P395P 0.43 TCGA-HU-A4H3-01 3 54596940 54596940 T - CACNA2D3 Frame_Shift_Del p.F221Lfs*40 0.25 TCGA-HU-A4H3-01 3 57582804 57582804 T C ARF4 Missense_Mutation p.M22V 0.42 deleterious_low_confidence(0) benign(0.041) TCGA-HU-A4H3-01 3 58089787 58089788 - G FLNB Frame_Shift_Ins p.H532Tfs*9 0.22 TCGA-HU-A4H3-01 3 58109159 58109159 G A FLNB Missense_Mutation p.V1156I 0.30 tolerated(0.28) probably_damaging(0.998) TCGA-HU-A4H3-01 3 58484416 58484416 A G KCTD6 5'UTR 0.37 TCGA-HU-A4H3-01 3 58620027 58620027 G A FAM3D Silent p.C218C 0.31 TCGA-HU-A4H3-01 3 66293695 66293695 A T SLC25A26 Missense_Mutation p.T87S 0.28 tolerated(0.63) benign(0.001) TCGA-HU-A4H3-01 3 71090609 71090609 T C FOXP1 Missense_Mutation p.N249D 0.21 tolerated(0.51) benign(0.304) TCGA-HU-A4H3-01 3 73432371 73432371 C T PDZRN3 3'UTR 0.31 TCGA-HU-A4H3-01 3 8675523 8675523 G A SSUH2 Intron 0.14 TCGA-HU-A4H3-01 3 93605255 93605255 C T PROS1 Silent p.P416P 0.23 TCGA-HU-A4H3-01 3 9517703 9517704 - G SETD5 Frame_Shift_Ins p.V1422Cfs*32 0.20 TCGA-HU-A4H3-01 3 96706798 96706798 T C EPHA6 Missense_Mutation p.C359R 0.34 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H3-01 4 104065724 104065724 T C CENPE Missense_Mutation p.N1637D 0.30 benign(0.027) TCGA-HU-A4H3-01 4 110384496 110384496 C T SEC24B Silent p.A191A 0.30 TCGA-HU-A4H3-01 4 110687927 110687927 T - CFI Frame_Shift_Del p.K37Nfs*65 0.28 TCGA-HU-A4H3-01 4 121738028 121738028 A - PRDM5 Frame_Shift_Del p.Q235Sfs*39 0.25 TCGA-HU-A4H3-01 4 122723894 122723894 T - EXOSC9 Frame_Shift_Del p.F78Lfs*23 0.32 TCGA-HU-A4H3-01 4 126370871 126370871 T C FAT4 Silent p.D2900D 0.29 TCGA-HU-A4H3-01 4 140188117 140188117 A G MGARP Missense_Mutation p.V120A 0.33 tolerated(0.34) benign(0.022) TCGA-HU-A4H3-01 4 152069209 152069209 A T SH3D19 Silent p.S369S 0.32 TCGA-HU-A4H3-01 4 153273636 153273636 T - FBXW7 Intron 0.31 TCGA-HU-A4H3-01 4 162307519 162307519 A G FSTL5 Silent p.L642L 0.33 TCGA-HU-A4H3-01 4 165891048 165891048 C T TRIM61 Missense_Mutation p.C36Y 0.22 deleterious(0.02) probably_damaging(1) TCGA-HU-A4H3-01 4 166238988 166238988 A G KLHL2 Silent p.A544A 0.27 TCGA-HU-A4H3-01 4 185310135 185310135 C T IRF2 Missense_Mutation p.G276D 0.32 deleterious(0.01) benign(0.033) TCGA-HU-A4H3-01 4 186112044 186112044 A T KIAA1430 Missense_Mutation p.L103M 0.22 tolerated(0.18) benign(0.049) TCGA-HU-A4H3-01 4 187454886 187454886 G T MTNR1A Missense_Mutation p.P337Q 0.38 deleterious(0) possibly_damaging(0.882) TCGA-HU-A4H3-01 4 187534385 187534385 G A FAT1 Missense_Mutation p.T3114M 0.05 possibly_damaging(0.803) TCGA-HU-A4H3-01 4 20512694 20512694 T C SLIT2 Missense_Mutation p.L331P 0.44 deleterious(0) probably_damaging(1) TCGA-HU-A4H3-01 4 2306598 2306598 C T ZFYVE28 Missense_Mutation p.G490D 0.35 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-HU-A4H3-01 4 26426086 26426086 T - RBPJ Frame_Shift_Del p.F221Lfs*42 0.28 TCGA-HU-A4H3-01 4 37592069 37592069 C T C4orf19 Missense_Mutation p.P131L 0.31 tolerated(0.21) benign(0.236) TCGA-HU-A4H3-01 4 38830420 38830420 C T TLR6 Silent p.L225L 0.32 TCGA-HU-A4H3-01 4 39915250 39915251 AA - PDS5A Frame_Shift_Del p.W325Afs*8 0.29 TCGA-HU-A4H3-01 4 44704989 44704989 A G GNPDA2 3'UTR 0.23 TCGA-HU-A4H3-01 4 47647195 47647196 - TC CORIN Frame_Shift_Ins p.D620Efs*13 0.31 TCGA-HU-A4H3-01 4 533012 533012 G A PIGG Missense_Mutation p.V936I 0.41 tolerated(0.74) benign(0.006) TCGA-HU-A4H3-01 4 56236103 56236103 G A SRD5A3 Missense_Mutation p.V268I 0.34 tolerated(0.39) benign(0.027) TCGA-HU-A4H3-01 4 5696067 5696067 G A EVC2 Missense_Mutation p.R149C 0.37 deleterious(0.02) benign(0.38) TCGA-HU-A4H3-01 4 57843591 57843591 T G NOA1 Missense_Mutation p.Y54S 0.29 tolerated_low_confidence(0.4) benign(0.001) TCGA-HU-A4H3-01 4 66467928 66467928 A - EPHA5 Frame_Shift_Del p.L114* 0.25 TCGA-HU-A4H3-01 4 68928686 68928686 G A TMPRSS11F Intron 0.35 TCGA-HU-A4H3-01 4 7043818 7043818 G A CCDC96 Missense_Mutation p.A283V 0.21 tolerated(0.19) benign(0.087) TCGA-HU-A4H3-01 4 72205146 72205146 C - SLC4A4 Frame_Shift_Del p.P106Lfs*56 0.24 TCGA-HU-A4H3-01 4 74367503 74367503 G T AFM Splice_Site p.X549_splice 0.29 TCGA-HU-A4H3-01 4 74863191 74863191 C T CXCL5 3'UTR 0.45 TCGA-HU-A4H3-01 4 76943854 76943854 C T CXCL10 Missense_Mutation p.V60I 0.33 tolerated(0.1) benign(0.047) TCGA-HU-A4H3-01 4 84234371 84234371 G A HPSE Missense_Mutation p.A190V 0.15 tolerated(0.1) probably_damaging(0.991) TCGA-HU-A4H3-01 4 85708812 85708812 C T WDFY3 Missense_Mutation p.V1242M 0.26 tolerated(0.12) benign(0.197) TCGA-HU-A4H3-01 4 8621094 8621094 G A CPZ Missense_Mutation p.R570Q 0.29 deleterious(0.02) possibly_damaging(0.708) TCGA-HU-A4H3-01 4 89034590 89034590 G A ABCG2 Silent p.S353S 0.31 TCGA-HU-A4H3-01 4 89199582 89199582 G A PPM1K Missense_Mutation p.P52S 0.45 tolerated(0.23) benign(0.001) TCGA-HU-A4H3-01 4 89628027 89628029 CCT - HERC3 In_Frame_Del p.L1024del 0.30 TCGA-HU-A4H3-01 4 90857091 90857091 A G MMRN1 Missense_Mutation p.T754A 0.30 tolerated(0.58) benign(0.006) TCGA-HU-A4H3-01 4 94376916 94376916 G A GRID2 Missense_Mutation p.R550Q 0.32 deleterious(0.02) benign(0.114) TCGA-HU-A4H3-01 4 951613 951613 G A TMEM175 Missense_Mutation p.E282K 0.29 deleterious(0.03) probably_damaging(0.934) TCGA-HU-A4H3-01 4 96052573 96052573 C T BMPR1B Missense_Mutation p.A359V 0.31 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H3-01 4 99960602 99960602 C T METAP1 Nonsense_Mutation p.R140* 0.23 TCGA-HU-A4H3-01 5 102201862 102201862 G A PAM 5'UTR 0.41 TCGA-HU-A4H3-01 5 110446959 110446959 A C WDR36 Missense_Mutation p.Q622H 0.33 tolerated(0.17) benign(0.002) TCGA-HU-A4H3-01 5 112176209 112176209 C T APC Missense_Mutation p.R1640W 0.23 probably_damaging(1) TCGA-HU-A4H3-01 5 115782634 115782634 T A SEMA6A Missense_Mutation p.N923I 0.21 deleterious(0.04) benign(0.288) TCGA-HU-A4H3-01 5 1255409 1255409 C A TERT Missense_Mutation p.K1050N 0.19 deleterious(0.02) benign(0.21) TCGA-HU-A4H3-01 5 128440935 128440935 G T ISOC1 Missense_Mutation p.G163C 0.17 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H3-01 5 129521238 129521238 A G CHSY3 Silent p.Q801Q 0.31 TCGA-HU-A4H3-01 5 130799880 130799880 A - RAPGEF6 Frame_Shift_Del p.H779Mfs*8 0.41 TCGA-HU-A4H3-01 5 130828390 130828390 T C RAPGEF6 Missense_Mutation p.E539G 0.33 deleterious(0) possibly_damaging(0.582) TCGA-HU-A4H3-01 5 130828445 130828445 C T RAPGEF6 Missense_Mutation p.A521T 0.36 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H3-01 5 131722731 131722731 C - SLC22A5 Frame_Shift_Del p.R282Dfs*14 0.32 TCGA-HU-A4H3-01 5 133479285 133479287 GAA - TCF7 In_Frame_Del p.K346del 0.30 TCGA-HU-A4H3-01 5 137780982 137780982 C T REEP2 Silent p.D159D 0.37 TCGA-HU-A4H3-01 5 137803521 137803521 G A EGR1 Silent p.P461P 0.23 TCGA-HU-A4H3-01 5 138269735 138269735 C T CTNNA1 Missense_Mutation p.P893L 0.30 deleterious(0) possibly_damaging(0.598) TCGA-HU-A4H3-01 5 13919426 13919426 C T DNAH5 Silent p.A278A 0.30 TCGA-HU-A4H3-01 5 140202594 140202594 C A PCDHA5 Missense_Mutation p.L412M 0.23 deleterious_low_confidence(0) probably_damaging(1) TCGA-HU-A4H3-01 5 140215588 140215588 G T PCDHA7 Silent p.A540A 0.35 TCGA-HU-A4H3-01 5 140250524 140250524 G A PCDHA11 Silent p.P612P 0.35 TCGA-HU-A4H3-01 5 140308985 140308985 A T PCDHAC1 Intron 0.28 TCGA-HU-A4H3-01 5 140501700 140501700 C T PCDHB4 Silent p.S40S 0.27 TCGA-HU-A4H3-01 5 140564111 140564111 C T PCDHB16 Silent p.H659H 0.35 TCGA-HU-A4H3-01 5 140573523 140573523 C T PCDHB10 Silent p.P466P 0.23 TCGA-HU-A4H3-01 5 140741226 140741226 C T PCDHGB2 Silent p.S508S 0.26 TCGA-HU-A4H3-01 5 140762765 140762765 C T PCDHGA7 Missense_Mutation p.A100V 0.23 tolerated_low_confidence(0.08) benign(0.037) TCGA-HU-A4H3-01 5 141019218 141019219 - G RELL2 Intron 0.20 TCGA-HU-A4H3-01 5 141020111 141020111 C T FCHSD1 3'UTR 0.42 TCGA-HU-A4H3-01 5 1422074 1422074 G A SLC6A3 Missense_Mutation p.R237W 0.38 deleterious(0) probably_damaging(0.989) TCGA-HU-A4H3-01 5 14477004 14477004 T - TRIO Frame_Shift_Del p.L2031* 0.33 TCGA-HU-A4H3-01 5 147480951 147480951 A G SPINK5 Silent p.E418E 0.31 TCGA-HU-A4H3-01 5 148422396 148422396 G A SH3TC2 Silent p.Y130Y 0.27 TCGA-HU-A4H3-01 5 148521564 148521564 C - ABLIM3 5'UTR 0.29 TCGA-HU-A4H3-01 5 149781790 149781790 G A CD74 3'UTR 0.25 TCGA-HU-A4H3-01 5 150603603 150603603 G A CCDC69 5'UTR 0.44 TCGA-HU-A4H3-01 5 150646383 150646383 G A GM2A Missense_Mutation p.C112Y 0.34 deleterious(0) probably_damaging(1) TCGA-HU-A4H3-01 5 156752567 156752567 A G CYFIP2 Missense_Mutation p.I609V 0.50 tolerated(0.08) benign(0.136) TCGA-HU-A4H3-01 5 15928475 15928475 C T FBXL7 Nonsense_Mutation p.R202* 0.25 TCGA-HU-A4H3-01 5 159437837 159437837 A - TTC1 Frame_Shift_Del p.N103Tfs*17 0.22 TCGA-HU-A4H3-01 5 167545433 167545433 C A TENM2 Silent p.S650S 0.35 TCGA-HU-A4H3-01 5 176004677 176004677 G A CDHR2 Missense_Mutation p.A464T 0.31 deleterious(0.02) possibly_damaging(0.899) TCGA-HU-A4H3-01 5 176397788 176397788 C T UIMC1 Silent p.E104E 0.36 TCGA-HU-A4H3-01 5 176710894 176710894 G A NSD1 Missense_Mutation p.R2039H 0.33 deleterious(0.01) possibly_damaging(0.845) TCGA-HU-A4H3-01 5 176885651 176885651 T C DBN1 Missense_Mutation p.Q397R 0.43 tolerated(0.2) benign(0.004) TCGA-HU-A4H3-01 5 178140325 178140326 - T ZNF354A Frame_Shift_Ins p.T185Nfs*6 0.27 TCGA-HU-A4H3-01 5 178994485 178994485 C T RUFY1 Missense_Mutation p.A209V 0.48 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H3-01 5 31407020 31407020 C T DROSHA Missense_Mutation p.R1296Q 0.26 deleterious(0) possibly_damaging(0.788) TCGA-HU-A4H3-01 5 31526886 31526886 G A DROSHA Nonsense_Mutation p.Q52* 0.27 TCGA-HU-A4H3-01 5 37064899 37064899 A - NIPBL Frame_Shift_Del p.I2776Lfs*3 0.37 TCGA-HU-A4H3-01 5 37164384 37164384 C T C5orf42 Missense_Mutation p.V2527I 0.26 tolerated(1) benign(0) TCGA-HU-A4H3-01 5 39202605 39202605 G A FYB Missense_Mutation p.P163L 0.38 tolerated(0.23) benign(0.009) TCGA-HU-A4H3-01 5 43173517 43173517 A - ZNF131 Frame_Shift_Del p.G353Efs*26 0.27 TCGA-HU-A4H3-01 5 44388550 44388550 A C FGF10 Missense_Mutation p.W79G 0.28 tolerated(0.33) benign(0.045) TCGA-HU-A4H3-01 5 5466528 5466528 G A KIAA0947 Missense_Mutation p.A1992T 0.19 deleterious(0) probably_damaging(1) TCGA-HU-A4H3-01 5 57753096 57753096 G A PLK2 Missense_Mutation p.A307V 0.38 deleterious(0) possibly_damaging(0.848) TCGA-HU-A4H3-01 5 64466574 64466574 C T ADAMTS6 Silent p.Q1038Q 0.35 TCGA-HU-A4H3-01 5 64766683 64766684 - A ADAMTS6 Frame_Shift_Ins p.L128Ffs*15 0.20 TCGA-HU-A4H3-01 5 70812075 70812075 A T BDP1 Missense_Mutation p.T1613S 0.18 tolerated(0.41) benign(0.116) TCGA-HU-A4H3-01 5 71638851 71638851 C T PTCD2 Silent p.C272C 0.24 TCGA-HU-A4H3-01 5 78964728 78964728 C T PAPD4 Missense_Mutation p.P362L 0.35 tolerated(0.11) benign(0.002) TCGA-HU-A4H3-01 5 79031946 79031946 C T CMYA5 Missense_Mutation p.P2453L 0.37 probably_damaging(0.994) TCGA-HU-A4H3-01 5 79815642 79815642 T - FAM151B Frame_Shift_Del p.L151* 0.29 TCGA-HU-A4H3-01 5 89814637 89814638 TA - LYSMD3 Frame_Shift_Del p.*307A 0.27 TCGA-HU-A4H3-01 5 89949385 89949385 G A GPR98 Missense_Mutation p.G1332R 0.36 probably_damaging(0.995) TCGA-HU-A4H3-01 6 10557410 10557410 C - GCNT2 Intron 0.28 TCGA-HU-A4H3-01 6 118228882 118228882 C A SLC35F1 5'UTR 0.50 TCGA-HU-A4H3-01 6 119345439 119345439 C T FAM184A Missense_Mutation p.M233I 0.29 tolerated(0.06) benign(0.003) TCGA-HU-A4H3-01 6 125404057 125404057 C T RNF217 3'UTR 0.40 TCGA-HU-A4H3-01 6 13634728 13634728 G A RANBP9 Missense_Mutation p.S577F 0.21 deleterious(0) probably_damaging(0.996) TCGA-HU-A4H3-01 6 137540418 137540418 C T IFNGR1 Missense_Mutation p.R16K 0.42 tolerated(1) benign(0.033) TCGA-HU-A4H3-01 6 138199749 138199749 G A TNFAIP3 Silent p.T389T 0.05 TCGA-HU-A4H3-01 6 138417555 138417557 GAA - PERP In_Frame_Del p.F97del 0.42 TCGA-HU-A4H3-01 6 143081633 143081634 - T HIVEP2 Frame_Shift_Ins p.T1931Nfs*12 0.19 TCGA-HU-A4H3-01 6 143093660 143093660 C A HIVEP2 Missense_Mutation p.R739M 0.28 deleterious(0) probably_damaging(0.998) TCGA-HU-A4H3-01 6 148761499 148761499 G A SASH1 Silent p.S114S 0.35 TCGA-HU-A4H3-01 6 149916287 149916287 T C KATNA1 Missense_Mutation p.H454R 0.29 tolerated(0.07) probably_damaging(0.975) TCGA-HU-A4H3-01 6 152621778 152621778 G A SYNE1 Nonsense_Mutation p.Q5894* 0.33 TCGA-HU-A4H3-01 6 152640107 152640107 C A SYNE1 Missense_Mutation p.S5427I 0.22 possibly_damaging(0.451) TCGA-HU-A4H3-01 6 15520474 15520474 T C JARID2 Missense_Mutation p.S1245P 0.21 tolerated_low_confidence(0.06) unknown(0) TCGA-HU-A4H3-01 6 157502210 157502211 AG - ARID1B Frame_Shift_Del p.G1084Lfs*33 0.26 TCGA-HU-A4H3-01 6 163899920 163899920 A - QKI Frame_Shift_Del p.K134Rfs*14 0.33 TCGA-HU-A4H3-01 6 166580164 166580164 C T T Silent p.S129S 0.38 TCGA-HU-A4H3-01 6 26156941 26156941 A G HIST1H1E Missense_Mutation p.N108S 0.25 tolerated(1) possibly_damaging(0.68) TCGA-HU-A4H3-01 6 28093420 28093420 C T ZSCAN16 Missense_Mutation p.R67C 0.30 tolerated(0.24) benign(0.004) TCGA-HU-A4H3-01 6 28543300 28543300 C T SCAND3 Silent p.L394L 0.28 TCGA-HU-A4H3-01 6 29342656 29342656 G - OR12D3 Frame_Shift_Del p.Q137Rfs*19 0.22 TCGA-HU-A4H3-01 6 29408447 29408447 C T OR10C1 Missense_Mutation p.R219C 0.35 tolerated(0.28) benign(0.001) TCGA-HU-A4H3-01 6 30040952 30040952 T - RNF39 Frame_Shift_Del p.M222Cfs*5 0.27 TCGA-HU-A4H3-01 6 31627249 31627249 C T C6orf47 Missense_Mutation p.R159Q 0.31 tolerated_low_confidence(0.26) benign(0.042) TCGA-HU-A4H3-01 6 31926206 31926206 G - NELFE Frame_Shift_Del p.G7Dfs*2 0.34 TCGA-HU-A4H3-01 6 32363934 32363934 G A BTNL2 Silent p.D320D 0.49 TCGA-HU-A4H3-01 6 32947844 32947844 C A BRD2 Missense_Mutation p.S729Y 0.33 deleterious(0) possibly_damaging(0.608) TCGA-HU-A4H3-01 6 33178990 33178990 G - RING1 Frame_Shift_Del p.E173Kfs*14 0.30 TCGA-HU-A4H3-01 6 33245676 33245676 G T B3GALT4 Missense_Mutation p.W160C 0.25 deleterious(0) probably_damaging(1) TCGA-HU-A4H3-01 6 33608274 33608274 C T ITPR3 Missense_Mutation p.R35C 0.35 deleterious(0) probably_damaging(1) TCGA-HU-A4H3-01 6 33740534 33740534 C A LEMD2 Missense_Mutation p.W461C 0.40 deleterious(0) probably_damaging(1) TCGA-HU-A4H3-01 6 34101362 34101362 G T GRM4 5'UTR 0.42 TCGA-HU-A4H3-01 6 34839369 34839369 C - UHRF1BP1 Frame_Shift_Del p.I1333Sfs*20 0.37 TCGA-HU-A4H3-01 6 34951143 34951143 C - ANKS1A Frame_Shift_Del p.P320Hfs*25 0.28 TCGA-HU-A4H3-01 6 35088313 35088313 G A TCP11 Missense_Mutation p.P289S 0.36 tolerated(0.12) benign(0.168) TCGA-HU-A4H3-01 6 38840716 38840716 G T DNAH8 Silent p.V2207V 0.35 TCGA-HU-A4H3-01 6 38942265 38942265 C T DNAH8 Missense_Mutation p.P4048L 0.34 probably_damaging(0.995) TCGA-HU-A4H3-01 6 40359938 40359938 C T LRFN2 Missense_Mutation p.R705Q 0.45 tolerated(0.21) benign(0.025) TCGA-HU-A4H3-01 6 42712855 42712855 G A TBCC Silent p.D319D 0.29 TCGA-HU-A4H3-01 6 42796578 42796578 G A GLTSCR1L Silent p.T169T 0.30 TCGA-HU-A4H3-01 6 43020085 43020085 C T CUL7 Missense_Mutation p.A200T 0.25 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H3-01 6 43192089 43192089 A G CUL9 Missense_Mutation p.N2487S 0.33 tolerated(0.07) probably_damaging(0.97) TCGA-HU-A4H3-01 6 43582328 43582328 T - POLH 3'UTR 0.23 TCGA-HU-A4H3-01 6 46293218 46293218 C - RCAN2 Intron 0.27 TCGA-HU-A4H3-01 6 55443799 55443799 G A HMGCLL1 Missense_Mutation p.R19W 0.26 tolerated_low_confidence(0.06) benign(0.008) TCGA-HU-A4H3-01 6 64410356 64410356 T C PHF3 Silent p.H1033H 0.33 TCGA-HU-A4H3-01 6 71570124 71570124 T - SMAP1 3'UTR 0.38 TCGA-HU-A4H3-01 6 7569500 7569500 G A DSP Missense_Mutation p.V501I 0.35 possibly_damaging(0.476) TCGA-HU-A4H3-01 6 7580631 7580631 G T DSP Missense_Mutation p.R1403M 0.38 probably_damaging(0.995) TCGA-HU-A4H3-01 6 7595261 7595261 T C SNRNP48 Silent p.N111N 0.50 TCGA-HU-A4H3-01 6 7880637 7880637 A - BMP6 3'UTR 0.32 TCGA-HU-A4H3-01 6 84925098 84925098 A - KIAA1009 Frame_Shift_Del p.F135Lfs*8 0.30 TCGA-HU-A4H3-01 6 89616132 89616132 C T RNGTT Missense_Mutation p.R132H 0.22 deleterious(0) possibly_damaging(0.889) TCGA-HU-A4H3-01 6 89793839 89793839 G C PNRC1 Missense_Mutation p.S303T 0.36 tolerated(0.18) benign(0.076) TCGA-HU-A4H3-01 6 90461182 90461182 G C MDN1 Missense_Mutation p.N1065K 0.38 probably_damaging(0.998) TCGA-HU-A4H3-01 6 90647937 90647937 G A BACH2 Missense_Mutation p.R657C 0.38 deleterious(0) probably_damaging(0.995) TCGA-HU-A4H3-01 6 99848384 99848384 T A PNISR 3'UTR 0.35 TCGA-HU-A4H3-01 7 100064709 100064709 C T TSC22D4 Missense_Mutation p.R354Q 0.28 deleterious(0) probably_damaging(0.983) TCGA-HU-A4H3-01 7 100201580 100201580 A G PCOLCE Splice_Site p.X69_splice 0.38 TCGA-HU-A4H3-01 7 100369603 100369603 G T ZAN Missense_Mutation p.Q1795H 0.20 unknown(0) TCGA-HU-A4H3-01 7 100489954 100489954 C T ACHE Splice_Site p.X518_splice 0.21 TCGA-HU-A4H3-01 7 100682687 100682687 G A MUC17 Missense_Mutation p.V2664M 0.03 unknown(0) TCGA-HU-A4H3-01 7 100853686 100853686 G A PLOD3 Missense_Mutation p.R514W 0.48 deleterious(0.01) benign(0.057) TCGA-HU-A4H3-01 7 103969672 103969672 G A LHFPL3 Missense_Mutation p.G149S 0.24 tolerated(0.15) benign(0.029) TCGA-HU-A4H3-01 7 104773469 104773469 C A SRPK2 Silent p.L542L 0.24 TCGA-HU-A4H3-01 7 11091407 11091407 G T PHF14 Silent p.T827T 0.10 TCGA-HU-A4H3-01 7 112462111 112462111 A T C7orf60 Missense_Mutation p.F302L 0.50 tolerated(0.09) probably_damaging(0.911) TCGA-HU-A4H3-01 7 116381017 116381017 C T MET Nonsense_Mutation p.R547* 0.48 TCGA-HU-A4H3-01 7 120428948 120428948 A C TSPAN12 Missense_Mutation p.C206G 0.53 deleterious(0) probably_damaging(1) TCGA-HU-A4H3-01 7 120455798 120455798 A G TSPAN12 Silent p.Y115Y 0.15 TCGA-HU-A4H3-01 7 123119935 123119935 T C IQUB Missense_Mutation p.T442A 0.19 tolerated(0.26) benign(0.021) TCGA-HU-A4H3-01 7 128470736 128470736 C T FLNC Silent p.G15G 0.23 TCGA-HU-A4H3-01 7 128493858 128493858 G A FLNC Missense_Mutation p.G2151S 0.15 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H3-01 7 141629893 141629893 G T CLEC5A 3'UTR 0.48 TCGA-HU-A4H3-01 7 141750592 141750592 C A MGAM Missense_Mutation p.S911R 0.38 tolerated(0.17) benign(0.001) TCGA-HU-A4H3-01 7 142562398 142562398 C - EPHB6 Frame_Shift_Del p.R283Gfs*12 0.38 TCGA-HU-A4H3-01 7 143748314 143748314 C A OR2A5 Missense_Mutation p.L274I 0.28 tolerated(0.07) benign(0.344) TCGA-HU-A4H3-01 7 149461869 149461869 G A ZNF467 Silent p.D574D 0.56 TCGA-HU-A4H3-01 7 149558562 149558562 G T ZNF862 Silent p.A771A 0.58 TCGA-HU-A4H3-01 7 150094403 150094403 G A ZNF775 Silent p.P278P 0.50 TCGA-HU-A4H3-01 7 150698397 150698398 - G NOS3 Frame_Shift_Ins p.C441Lfs*57 0.24 TCGA-HU-A4H3-01 7 150720577 150720577 C T ATG9B Missense_Mutation p.R205Q 0.83 tolerated(0.07) probably_damaging(0.998) TCGA-HU-A4H3-01 7 151879153 151879153 G T KMT2C Nonsense_Mutation p.S1931* 0.57 TCGA-HU-A4H3-01 7 1544207 1544208 - CC INTS1 5'Flank 0.42 TCGA-HU-A4H3-01 7 156469391 156469391 T A RNF32 3'UTR 0.39 TCGA-HU-A4H3-01 7 158716414 158716414 G A WDR60 Silent p.T749T 0.48 TCGA-HU-A4H3-01 7 195728 195728 C T FAM20C Silent p.S260S 0.72 TCGA-HU-A4H3-01 7 22985387 22985387 G T FAM126A Missense_Mutation p.P463T 0.26 tolerated(0.25) benign(0.005) TCGA-HU-A4H3-01 7 25194757 25194757 G A C7orf31 Silent p.R156R 0.19 TCGA-HU-A4H3-01 7 31014105 31014105 G A GHRHR Splice_Site p.X271_splice 0.54 TCGA-HU-A4H3-01 7 33014804 33014804 C - FKBP9 Frame_Shift_Del p.N129Ifs*10 0.29 TCGA-HU-A4H3-01 7 33055402 33055402 G A NT5C3A Silent p.F263F 0.26 TCGA-HU-A4H3-01 7 33545232 33545232 C T BBS9 Missense_Mutation p.P758L 0.42 deleterious(0) probably_damaging(0.92) TCGA-HU-A4H3-01 7 36194050 36194050 G A EEPD1 Silent p.R39R 0.22 TCGA-HU-A4H3-01 7 36959035 36959035 G T ELMO1 Intron 0.20 TCGA-HU-A4H3-01 7 38433753 38433753 G A AMPH Missense_Mutation p.A487V 0.11 tolerated(0.47) benign(0.002) TCGA-HU-A4H3-01 7 42116409 42116409 C T GLI3 Missense_Mutation p.A139T 0.15 tolerated(0.34) benign(0.309) TCGA-HU-A4H3-01 7 4273010 4273010 C T SDK1 Missense_Mutation p.A1984V 0.64 tolerated(0.26) benign(0.002) TCGA-HU-A4H3-01 7 44425629 44425629 G A NUDCD3 Missense_Mutation p.P356L 0.32 deleterious(0) possibly_damaging(0.895) TCGA-HU-A4H3-01 7 44576448 44576448 C - NPC1L1 Frame_Shift_Del p.Y559Tfs*12 0.33 TCGA-HU-A4H3-01 7 45015133 45015133 A C MYO1G Missense_Mutation p.F172V 0.58 deleterious(0) possibly_damaging(0.683) TCGA-HU-A4H3-01 7 47344520 47344520 C T TNS3 Missense_Mutation p.R911Q 0.19 tolerated(0.13) benign(0.006) TCGA-HU-A4H3-01 7 47944770 47944770 G A PKD1L1 Missense_Mutation p.L559F 0.60 tolerated(0.11) benign(0.063) TCGA-HU-A4H3-01 7 48313025 48313025 G T ABCA13 Missense_Mutation p.E1254D 0.24 possibly_damaging(0.678) TCGA-HU-A4H3-01 7 48335320 48335320 G A ABCA13 Silent p.S2993S 0.47 TCGA-HU-A4H3-01 7 5105012 5105012 A G RBAK Missense_Mutation p.Y642C 0.05 deleterious(0.03) probably_damaging(0.999) TCGA-HU-A4H3-01 7 72732951 72732951 C - TRIM50 Frame_Shift_Del p.G199Vfs*61 0.23 TCGA-HU-A4H3-01 7 74005272 74005272 G A GTF2IRD1 Silent p.T871T 0.26 TCGA-HU-A4H3-01 7 75189089 75189089 C A HIP1 Missense_Mutation p.R441M 0.21 deleterious(0) benign(0.032) TCGA-HU-A4H3-01 7 82390055 82390055 T - PCLO Frame_Shift_Del p.K5063Rfs*2 0.39 TCGA-HU-A4H3-01 7 83823851 83823851 C T SEMA3A Missense_Mutation p.A18T 0.11 tolerated(0.45) benign(0.001) TCGA-HU-A4H3-01 7 87507389 87507389 A - DBF4 Frame_Shift_Del p.N25Tfs*5 0.35 TCGA-HU-A4H3-01 7 90042232 90042232 T C CLDN12 Missense_Mutation p.L81P 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-HU-A4H3-01 7 94163028 94163028 T C CASD1 Missense_Mutation p.L181P 0.42 deleterious(0) probably_damaging(0.995) TCGA-HU-A4H3-01 7 97821424 97821424 C T LMTK2 Silent p.S549S 0.27 TCGA-HU-A4H3-01 7 97984432 97984432 G A BAIAP2L1 Silent p.L46L 0.39 TCGA-HU-A4H3-01 7 99308406 99308406 A G CYP3A7 Silent p.P325P 0.59 TCGA-HU-A4H3-01 7 99695354 99695354 C T MCM7 Missense_Mutation p.E334K 0.03 tolerated(0.08) benign(0.212) TCGA-HU-A4H3-01 7 99706053 99706053 C T TAF6 Silent p.K502K 0.49 TCGA-HU-A4H3-01 8 100654601 100654601 C A VPS13B Missense_Mutation p.P1953H 0.27 deleterious(0) probably_damaging(0.99) TCGA-HU-A4H3-01 8 100865890 100865890 G - VPS13B Frame_Shift_Del p.D3451Tfs*4 0.18 TCGA-HU-A4H3-01 8 101541845 101541845 C T ANKRD46 Missense_Mutation p.A73T 0.27 tolerated(0.19) possibly_damaging(0.787) TCGA-HU-A4H3-01 8 103573126 103573126 A G ODF1 3'UTR 0.22 TCGA-HU-A4H3-01 8 104427341 104427341 G T DCAF13 Silent p.G41G 0.41 TCGA-HU-A4H3-01 8 104709417 104709417 A G RIMS2 Missense_Mutation p.I94V 0.27 tolerated_low_confidence(0.15) benign(0.327) TCGA-HU-A4H3-01 8 105026793 105026793 G A RIMS2 Missense_Mutation p.R1095Q 0.28 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-HU-A4H3-01 8 105509429 105509429 A - LRP12 Frame_Shift_Del p.C451Afs*37 0.22 TCGA-HU-A4H3-01 8 10892734 10892734 C T XKR6 Intron 0.24 TCGA-HU-A4H3-01 8 110980792 110980792 T C KCNV1 Missense_Mutation p.Y343C 0.27 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H3-01 8 113314033 113314033 G A CSMD3 Missense_Mutation p.T2810I 0.15 tolerated(0.16) possibly_damaging(0.868) TCGA-HU-A4H3-01 8 113518929 113518929 G A CSMD3 Missense_Mutation p.A1629V 0.14 tolerated(0.71) probably_damaging(0.99) TCGA-HU-A4H3-01 8 113585761 113585761 C A CSMD3 Silent p.G1337G 0.26 TCGA-HU-A4H3-01 8 116430571 116430571 T C TRPS1 Missense_Mutation p.Q937R 0.28 deleterious(0.01) probably_damaging(0.99) TCGA-HU-A4H3-01 8 121061957 121061957 C T DEPTOR 3'UTR 0.20 TCGA-HU-A4H3-01 8 121238900 121238900 T C COL14A1 Silent p.D633D 0.30 TCGA-HU-A4H3-01 8 124121565 124121565 A G TBC1D31 Silent p.L406L 0.31 TCGA-HU-A4H3-01 8 124359583 124359583 C T ATAD2 Missense_Mutation p.R654H 0.22 deleterious(0.01) possibly_damaging(0.468) TCGA-HU-A4H3-01 8 124382200 124382200 A T ATAD2 Missense_Mutation p.D264E 0.24 tolerated(1) benign(0) TCGA-HU-A4H3-01 8 124707762 124707762 T - ANXA13 Frame_Shift_Del p.I192Sfs*20 0.25 TCGA-HU-A4H3-01 8 125464363 125464363 G A TRMT12 Missense_Mutation p.A399T 0.20 tolerated(1) benign(0.002) TCGA-HU-A4H3-01 8 125499032 125499032 C A RNF139 Missense_Mutation p.S381Y 0.23 deleterious(0) probably_damaging(0.989) TCGA-HU-A4H3-01 8 133920513 133920513 C T TG Silent p.Y1310Y 0.17 TCGA-HU-A4H3-01 8 142506590 142506590 G - MROH5 5'UTR 0.22 TCGA-HU-A4H3-01 8 144671875 144671875 C T EEF1D Missense_Mutation p.R126H 0.13 tolerated(0.21) benign(0.046) TCGA-HU-A4H3-01 8 144940592 144940592 C T EPPK1 Missense_Mutation p.R2277H 0.06 benign(0.01) TCGA-HU-A4H3-01 8 144941378 144941378 C - EPPK1 Frame_Shift_Del p.G2015Vfs*36 0.25 TCGA-HU-A4H3-01 8 144991177 144991177 G A PLEC Missense_Mutation p.S4408L 0.26 benign(0.358) TCGA-HU-A4H3-01 8 144995188 144995188 G A PLEC Missense_Mutation p.T3071M 0.17 probably_damaging(0.993) TCGA-HU-A4H3-01 8 144995398 144995398 T C PLEC Missense_Mutation p.Y3001C 0.24 probably_damaging(1) TCGA-HU-A4H3-01 8 145139352 145139352 C T GPAA1 Silent p.L284L 0.23 TCGA-HU-A4H3-01 8 145150876 145150876 C - CYC1 Frame_Shift_Del p.S93Afs*161 0.26 TCGA-HU-A4H3-01 8 145584682 145584682 G A SLC52A2 3'UTR 0.20 TCGA-HU-A4H3-01 8 145738257 145738257 C T RECQL4 Missense_Mutation p.V910I 0.18 deleterious(0.04) possibly_damaging(0.524) TCGA-HU-A4H3-01 8 15998451 15998451 G T MSR1 Intron 0.20 TCGA-HU-A4H3-01 8 1645405 1645405 C T DLGAP2 Silent p.F883F 0.29 TCGA-HU-A4H3-01 8 1851600 1851600 G A ARHGEF10 Missense_Mutation p.E602K 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-HU-A4H3-01 8 22005848 22005848 T C LGI3 Missense_Mutation p.Q491R 0.20 tolerated(0.13) benign(0.003) TCGA-HU-A4H3-01 8 22019276 22019276 G A SFTPC 5'UTR 0.25 TCGA-HU-A4H3-01 8 22472975 22472975 C - CCAR2 Frame_Shift_Del p.R417Gfs*89 0.26 TCGA-HU-A4H3-01 8 23155605 23155605 T - LOXL2 Frame_Shift_Del p.K759Sfs*9 0.25 TCGA-HU-A4H3-01 8 23198656 23198656 G A LOXL2 Missense_Mutation p.R198C 0.19 deleterious(0) probably_damaging(0.982) TCGA-HU-A4H3-01 8 26238970 26238970 C T BNIP3L 5'Flank 0.37 TCGA-HU-A4H3-01 8 27278190 27278190 C T PTK2B Missense_Mutation p.R134C 0.23 deleterious(0) probably_damaging(1) TCGA-HU-A4H3-01 8 27288462 27288462 G A PTK2B Missense_Mutation p.V247I 0.25 tolerated(1) benign(0.002) TCGA-HU-A4H3-01 8 27729504 27729504 C - SCARA5 Frame_Shift_Del p.V479* 0.24 TCGA-HU-A4H3-01 8 28573610 28573610 G A EXTL3 Missense_Mutation p.A12T 0.31 tolerated_low_confidence(0.5) benign(0.011) TCGA-HU-A4H3-01 8 28608343 28608343 G A EXTL3 Missense_Mutation p.R907H 0.25 deleterious(0) probably_damaging(0.985) TCGA-HU-A4H3-01 8 3224595 3224595 T C CSMD1 Missense_Mutation p.D1025G 0.26 probably_damaging(0.999) TCGA-HU-A4H3-01 8 37729956 37729956 C T RAB11FIP1 Missense_Mutation p.M788I 0.26 tolerated(0.35) benign(0.001) TCGA-HU-A4H3-01 8 381399 381399 A - FBXO25 Frame_Shift_Del p.R67Gfs*44 0.22 TCGA-HU-A4H3-01 8 41794925 41794925 G A KAT6A Silent p.I1067I 0.22 TCGA-HU-A4H3-01 8 41906483 41906483 C T KAT6A Missense_Mutation p.A5T 0.25 probably_damaging(0.98) TCGA-HU-A4H3-01 8 42742939 42742939 G A RNF170 Silent p.S23S 0.18 TCGA-HU-A4H3-01 8 43155752 43155752 T G RNU6-104P 5'Flank 0.20 TCGA-HU-A4H3-01 8 52321056 52321056 C T PXDNL Missense_Mutation p.G1043D 0.24 tolerated(0.06) possibly_damaging(0.464) TCGA-HU-A4H3-01 8 52321771 52321771 G A PXDNL Missense_Mutation p.H805Y 0.35 deleterious(0) benign(0.233) TCGA-HU-A4H3-01 8 53596230 53596230 C T RB1CC1 Missense_Mutation p.R83H 0.22 deleterious(0.02) possibly_damaging(0.667) TCGA-HU-A4H3-01 8 53852972 53852972 G A NPBWR1 Missense_Mutation p.V169I 0.15 tolerated(1) benign(0.048) TCGA-HU-A4H3-01 8 54163406 54163406 C T OPRK1 Silent p.A64A 0.21 TCGA-HU-A4H3-01 8 54852152 54852152 G A RGS20 Missense_Mutation p.R176Q 0.40 tolerated(0.13) benign(0.006) TCGA-HU-A4H3-01 8 55542928 55542928 C T RP1 3'UTR 0.28 TCGA-HU-A4H3-01 8 56015229 56015229 T G XKR4 Missense_Mutation p.C61G 0.36 tolerated_low_confidence(0.39) benign(0) TCGA-HU-A4H3-01 8 56663664 56663664 T C TMEM68 Silent p.K182K 0.27 TCGA-HU-A4H3-01 8 65493419 65493419 C T BHLHE22 Silent p.S24S 0.33 TCGA-HU-A4H3-01 8 66619376 66619377 AA - MTFR1 Frame_Shift_Del p.R218Sfs*9 0.19 TCGA-HU-A4H3-01 8 66989062 66989062 A G DNAJC5B Missense_Mutation p.D96G 0.20 deleterious(0.01) benign(0.09) TCGA-HU-A4H3-01 8 70514037 70514037 G A SULF1 Missense_Mutation p.R345H 0.24 deleterious(0.03) probably_damaging(1) TCGA-HU-A4H3-01 8 72967786 72967786 T C TRPA1 Missense_Mutation p.T472A 0.16 deleterious(0.04) benign(0.257) TCGA-HU-A4H3-01 8 86114461 86114461 A - E2F5 Frame_Shift_Del p.K107Sfs*11 0.18 TCGA-HU-A4H3-01 8 9565940 9565940 A - TNKS Frame_Shift_Del p.T508Hfs*33 0.27 TCGA-HU-A4H3-01 8 95690446 95690446 C T ESRP1 Missense_Mutation p.S556F 0.22 tolerated(0.45) possibly_damaging(0.62) TCGA-HU-A4H3-01 8 9760969 9760969 G A LINC00599 5'Flank 0.12 TCGA-HU-A4H3-01 9 100961816 100961816 C T TBC1D2 Silent p.L867L 0.33 TCGA-HU-A4H3-01 9 101518711 101518711 T C ANKS6 Missense_Mutation p.T773A 0.27 deleterious(0) probably_damaging(0.998) TCGA-HU-A4H3-01 9 103054983 103054983 G - INVS Frame_Shift_Del p.E817Rfs*19 0.32 TCGA-HU-A4H3-01 9 104071658 104071658 G T LPPR1 Missense_Mutation p.G184V 0.33 deleterious(0) probably_damaging(1) TCGA-HU-A4H3-01 9 104193086 104193086 C A ALDOB Missense_Mutation p.K28N 0.40 deleterious(0) probably_damaging(0.995) TCGA-HU-A4H3-01 9 104432344 104432344 T C GRIN3A Missense_Mutation p.K784E 0.32 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H3-01 9 105767539 105767539 A - CYLC2 Frame_Shift_Del p.G211Efs*22 0.17 TCGA-HU-A4H3-01 9 111681560 111681561 - A IKBKAP Frame_Shift_Ins p.A208Cfs*28 0.26 TCGA-HU-A4H3-01 9 117360025 117360026 AG - ATP6V1G1 3'UTR 0.19 TCGA-HU-A4H3-01 9 117822 117822 G A FOXD4 Missense_Mutation p.R100W 0.15 deleterious(0.01) benign(0.2) TCGA-HU-A4H3-01 9 119097332 119097332 C T PAPPA Missense_Mutation p.T1197I 0.29 tolerated(0.24) possibly_damaging(0.507) TCGA-HU-A4H3-01 9 124329464 124329464 C T DAB2IP 5'UTR 0.35 TCGA-HU-A4H3-01 9 124936889 124936889 G A MORN5 Missense_Mutation p.R141H 0.37 tolerated(0.06) benign(0.015) TCGA-HU-A4H3-01 9 125152626 125152626 T C PTGS1 Splice_Site p.X482_splice 0.32 TCGA-HU-A4H3-01 9 127265430 127265430 C T NR5A1 Missense_Mutation p.D58N 0.33 tolerated(0.19) possibly_damaging(0.908) TCGA-HU-A4H3-01 9 127828331 127828331 T C SCAI Silent p.R35R 0.38 TCGA-HU-A4H3-01 9 130588851 130588851 C - ENG Frame_Shift_Del p.G154Afs*9 0.28 TCGA-HU-A4H3-01 9 130710444 130710444 C T FAM102A Silent p.T174T 0.35 TCGA-HU-A4H3-01 9 131095999 131095999 A G COQ4 3'UTR 0.30 TCGA-HU-A4H3-01 9 134103717 134103717 G A NUP214 Missense_Mutation p.G2025R 0.23 probably_damaging(0.991) TCGA-HU-A4H3-01 9 134319684 134319684 G A PRRC2B Silent p.S194S 0.31 TCGA-HU-A4H3-01 9 134330506 134330508 TGA - PRRC2B In_Frame_Del p.D390del 0.45 TCGA-HU-A4H3-01 9 134390826 134390827 - C POMT1 Frame_Shift_Ins p.L421Pfs*13 0.27 TCGA-HU-A4H3-01 9 135929231 135929231 G A GTF3C5 Missense_Mutation p.R297H 0.32 deleterious(0) probably_damaging(0.988) TCGA-HU-A4H3-01 9 136031317 136031317 C T GBGT1 Silent p.Q65Q 0.29 TCGA-HU-A4H3-01 9 139274297 139274297 C T SNAPC4 Missense_Mutation p.S840N 0.15 tolerated(0.81) benign(0) TCGA-HU-A4H3-01 9 139277746 139277746 C T SNAPC4 Silent p.T625T 0.31 TCGA-HU-A4H3-01 9 139973715 139973715 A G UAP1L1 Missense_Mutation p.E284G 0.20 deleterious(0.03) possibly_damaging(0.841) TCGA-HU-A4H3-01 9 139990814 139990814 G A MAN1B1 Silent p.P197P 0.45 TCGA-HU-A4H3-01 9 140166984 140166984 C T NELFB Silent p.L505L 0.28 TCGA-HU-A4H3-01 9 140508883 140508883 G A ARRDC1 Missense_Mutation p.A251T 0.31 tolerated(0.18) benign(0.219) TCGA-HU-A4H3-01 9 18777025 18777025 A G ADAMTSL1 Missense_Mutation p.K933R 0.34 deleterious(0.01) benign(0.424) TCGA-HU-A4H3-01 9 19346885 19346887 CTT - DENND4C In_Frame_Del p.S1325del 0.33 TCGA-HU-A4H3-01 9 2807900 2807900 A T KIAA0020 Nonsense_Mutation p.C576* 0.29 TCGA-HU-A4H3-01 9 32457002 32457003 - T DDX58 3'UTR 0.41 TCGA-HU-A4H3-01 9 33675379 33675379 C A PTENP1 RNA 0.29 TCGA-HU-A4H3-01 9 33675400 33675400 G A PTENP1 RNA 0.16 TCGA-HU-A4H3-01 9 34372554 34372554 C T KIAA1161 Missense_Mutation p.A96T 0.27 tolerated(0.43) benign(0.022) TCGA-HU-A4H3-01 9 34379126 34379126 A G C9orf24 3'UTR 0.35 TCGA-HU-A4H3-01 9 34660686 34660686 G T IL11RA Intron 0.33 TCGA-HU-A4H3-01 9 35059794 35059794 C T VCP Missense_Mutation p.R567H 0.23 deleterious(0) possibly_damaging(0.777) TCGA-HU-A4H3-01 9 35091530 35091530 C G PIGO Missense_Mutation p.G785A 0.28 tolerated(0.23) possibly_damaging(0.844) TCGA-HU-A4H3-01 9 35650182 35650182 C A SIT1 Missense_Mutation p.R119M 0.20 deleterious(0.03) benign(0.104) TCGA-HU-A4H3-01 9 35792877 35792877 G A NPR2 Missense_Mutation p.G158R 0.35 tolerated(0.7) benign(0.002) TCGA-HU-A4H3-01 9 71002450 71002450 G T PGM5 Missense_Mutation p.G215C 0.37 deleterious(0.01) possibly_damaging(0.684) TCGA-HU-A4H3-01 9 72741207 72741207 A T MAMDC2 Missense_Mutation p.N259I 0.40 tolerated(0.21) possibly_damaging(0.85) TCGA-HU-A4H3-01 9 79322953 79322953 G A PRUNE2 Missense_Mutation p.R1413C 0.39 tolerated(0.89) benign(0) TCGA-HU-A4H3-01 9 79824434 79824434 C T VPS13A Missense_Mutation p.R161C 0.30 deleterious(0) probably_damaging(0.983) TCGA-HU-A4H3-01 9 79836219 79836219 A - VPS13A Frame_Shift_Del p.K372Sfs*2 0.33 TCGA-HU-A4H3-01 9 80858424 80858424 G A CEP78 Missense_Mutation p.R217H 0.33 deleterious(0) probably_damaging(0.996) TCGA-HU-A4H3-01 9 88925684 88925684 T G ZCCHC6 Silent p.P1105P 0.24 TCGA-HU-A4H3-01 9 91616077 91616077 T C S1PR3 5'UTR 0.35 TCGA-HU-A4H3-01 9 91616486 91616486 C T S1PR3 Missense_Mutation p.A124V 0.36 deleterious(0) probably_damaging(1) TCGA-HU-A4H3-01 9 95738814 95738814 C T FGD3 Silent p.C92C 0.26 TCGA-HU-A4H3-01 9 97062749 97062749 C A ZNF169 Silent p.S303S 0.27 TCGA-HU-A4H3-01 9 98003011 98003011 T - FANCC Frame_Shift_Del p.I89Ffs*2 0.25 TCGA-HU-A4H3-01 X 101138490 101138490 C A ZMAT1 Nonsense_Mutation p.G637* 0.06 TCGA-HU-A4H3-01 X 106482225 106482225 G A PIH1D3 Missense_Mutation p.R168H 0.25 deleterious(0) probably_damaging(0.995) TCGA-HU-A4H3-01 X 106843757 106843757 C A FRMPD3 Missense_Mutation p.P863T 0.35 deleterious(0) probably_damaging(0.987) TCGA-HU-A4H3-01 X 108902693 108902693 A G ACSL4 Missense_Mutation p.L623S 0.22 deleterious(0) possibly_damaging(0.845) TCGA-HU-A4H3-01 X 114879381 114879382 CT - PLS3 Frame_Shift_Del p.L410Wfs*12 0.31 TCGA-HU-A4H3-01 X 118222649 118222649 T G KIAA1210 Missense_Mutation p.E848D 0.41 tolerated(0.22) benign(0.021) TCGA-HU-A4H3-01 X 118678354 118678354 T - CXorf56 Frame_Shift_Del p.T129Rfs*14 0.31 TCGA-HU-A4H3-01 X 120183165 120183165 A G GLUD2 Missense_Mutation p.I543V 0.37 tolerated(0.2) benign(0.038) TCGA-HU-A4H3-01 X 130419306 130419306 C T IGSF1 Missense_Mutation p.V172M 0.17 tolerated(0.12) benign(0.119) TCGA-HU-A4H3-01 X 131203605 131203605 A - MST4 Frame_Shift_Del p.N234Tfs*22 0.21 TCGA-HU-A4H3-01 X 131211976 131211978 TCT - FRMD7 In_Frame_Del p.E689del 0.32 TCGA-HU-A4H3-01 X 13337235 13337235 A C ATXN3L Silent p.T273T 0.23 TCGA-HU-A4H3-01 X 135047108 135047108 G T MMGT1 3'UTR 0.31 TCGA-HU-A4H3-01 X 135067850 135067850 C T SLC9A6 Silent p.A63A 0.33 TCGA-HU-A4H3-01 X 138667228 138667228 G A MCF2 Silent p.L990L 0.31 TCGA-HU-A4H3-01 X 140996328 140996328 A C MAGEC1 Missense_Mutation p.K1046N 0.29 deleterious(0.01) unknown(0) TCGA-HU-A4H3-01 X 140996374 140996374 T C MAGEC1 Missense_Mutation p.S1062P 0.34 deleterious(0) unknown(0) TCGA-HU-A4H3-01 X 144329135 144329135 G T SPANXN1 Missense_Mutation p.G10V 0.27 deleterious(0.01) probably_damaging(0.994) TCGA-HU-A4H3-01 X 152482876 152482876 C A MAGEA1 Missense_Mutation p.E45D 0.36 tolerated(0.21) benign(0.364) TCGA-HU-A4H3-01 X 152710795 152710795 G T TREX2 Missense_Mutation p.L32I 0.47 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H3-01 X 153043640 153043640 G T PLXNB3 Intron 0.35 TCGA-HU-A4H3-01 X 153583264 153583264 G - FLNA Frame_Shift_Del p.Q1716Sfs*23 0.21 TCGA-HU-A4H3-01 X 19028750 19028750 G A GPR64 Silent p.L416L 0.29 TCGA-HU-A4H3-01 X 19391783 19391783 G T MAP3K15 Missense_Mutation p.P935H 0.35 deleterious(0) benign(0.021) TCGA-HU-A4H3-01 X 21875411 21875411 C T YY2 Missense_Mutation p.A270V 0.31 deleterious(0) possibly_damaging(0.817) TCGA-HU-A4H3-01 X 22095708 22095708 A G PHEX Missense_Mutation p.K184R 0.29 tolerated(0.37) benign(0.011) TCGA-HU-A4H3-01 X 24228545 24228545 C T ZFX Silent p.C490C 0.37 TCGA-HU-A4H3-01 X 24523371 24523371 T C PDK3 Missense_Mutation p.I184T 0.40 deleterious(0) benign(0.365) TCGA-HU-A4H3-01 X 2748220 2748220 G A GYG2 5'UTR 0.22 TCGA-HU-A4H3-01 X 2795326 2795326 C T GYG2 Missense_Mutation p.P441L 0.35 deleterious(0.01) benign(0.11) TCGA-HU-A4H3-01 X 29959766 29959766 A C IL1RAPL1 Splice_Site p.X353_splice 0.38 TCGA-HU-A4H3-01 X 30254059 30254059 G T MAGEB3 Missense_Mutation p.K6N 0.29 deleterious(0.03) possibly_damaging(0.85) TCGA-HU-A4H3-01 X 32717315 32717315 G T DMD Missense_Mutation p.Q249K 0.07 benign(0.34) TCGA-HU-A4H3-01 X 34675058 34675058 G A TMEM47 Missense_Mutation p.A30V 0.33 deleterious(0) benign(0.274) TCGA-HU-A4H3-01 X 35969461 35969461 C T CXorf22 Silent p.A290A 0.33 TCGA-HU-A4H3-01 X 37028275 37028275 C - FAM47C Frame_Shift_Del p.E600Rfs*225 0.27 TCGA-HU-A4H3-01 X 37955458 37955458 A G SYTL5 Missense_Mutation p.S345G 0.37 deleterious(0) possibly_damaging(0.653) TCGA-HU-A4H3-01 X 38144935 38144935 T - RPGR Frame_Shift_Del p.K1106Sfs*25 0.27 TCGA-HU-A4H3-01 X 41069787 41069787 C T USP9X Missense_Mutation p.R1681C 0.24 deleterious(0) probably_damaging(0.959) TCGA-HU-A4H3-01 X 45013320 45013320 C T CXorf36 Missense_Mutation p.D266N 0.26 deleterious(0.04) probably_damaging(0.95) TCGA-HU-A4H3-01 X 47272096 47272096 T C ZNF157 Silent p.H208H 0.36 TCGA-HU-A4H3-01 X 47516675 47516675 C T UXT Missense_Mutation p.R100H 0.33 tolerated(0.14) benign(0.009) TCGA-HU-A4H3-01 X 47919007 47919007 T G ZNF630 Missense_Mutation p.K275T 0.36 deleterious(0.01) possibly_damaging(0.749) TCGA-HU-A4H3-01 X 48925140 48925140 G - CCDC120 Frame_Shift_Del p.E464Sfs*172 0.40 TCGA-HU-A4H3-01 X 49108062 49108062 C T FOXP3 Intron 0.20 TCGA-HU-A4H3-01 X 51638746 51638746 G A MAGED1 Missense_Mutation p.D271N 0.34 tolerated_low_confidence(0.97) unknown(0) TCGA-HU-A4H3-01 X 53453324 53453324 C T RIBC1 Missense_Mutation p.R34W 0.17 tolerated(0.12) probably_damaging(0.994) TCGA-HU-A4H3-01 X 55748700 55748700 C T RRAGB Missense_Mutation p.R70C 0.30 deleterious(0) probably_damaging(0.93) TCGA-HU-A4H3-01 X 5821694 5821694 G A NLGN4X Missense_Mutation p.P342L 0.28 deleterious(0) probably_damaging(1) TCGA-HU-A4H3-01 X 63413173 63413173 G T AMER1 5'UTR 0.33 TCGA-HU-A4H3-01 X 65824948 65824948 C A EDA2R Missense_Mutation p.V70F 0.21 deleterious(0.01) possibly_damaging(0.495) TCGA-HU-A4H3-01 X 70387541 70387541 G - NLGN3 Frame_Shift_Del p.V533Ffs*4 0.31 TCGA-HU-A4H3-01 X 73064010 73064010 A G XIST RNA 0.29 TCGA-HU-A4H3-01 X 77387182 77387182 C T TAF9B Silent p.S227S 0.30 TCGA-HU-A4H3-01 X 77393320 77393320 C T TAF9B Missense_Mutation p.A111T 0.23 tolerated(0.93) benign(0.009) TCGA-HU-A4H3-01 X 8434478 8434478 G T VCX3B 3'UTR 0.14 TCGA-HU-A4H3-01 X 92965080 92965080 A T FAM133A Missense_Mutation p.K221I 0.32 tolerated_low_confidence(0.14) unknown(0) TCGA-HU-A4H3-01 X 96139979 96139979 C T RPA4 Missense_Mutation p.R224W 0.28 deleterious(0) benign(0.243) TCGA-HU-A4H3-01 X 9661211 9661211 C T TBL1X Missense_Mutation p.T305M 0.36 deleterious(0.02) probably_damaging(0.982) TCGA-HU-A4H3-01 X 9864116 9864116 C A SHROOM2 Missense_Mutation p.T723N 0.40 tolerated(0.09) benign(0.008) TCGA-HU-A4H4-01 10 100017803 100017803 A G LOXL4 Missense_Mutation p.V347A 0.05 deleterious(0) probably_damaging(0.994) TCGA-HU-A4H4-01 10 103917033 103917033 G T NOLC1 Missense_Mutation p.E88D 0.07 tolerated_low_confidence(0.08) benign(0.006) TCGA-HU-A4H4-01 10 104493348 104493348 T C SFXN2 Missense_Mutation p.L270P 0.18 deleterious(0.01) probably_damaging(0.974) TCGA-HU-A4H4-01 10 105037208 105037208 G A INA Silent p.A80A 0.21 TCGA-HU-A4H4-01 10 121436122 121436122 C A BAG3 Silent p.S352S 0.11 TCGA-HU-A4H4-01 10 122624600 122624600 A G WDR11 Missense_Mutation p.Y252C 0.11 deleterious(0) benign(0.15) TCGA-HU-A4H4-01 10 123997013 123997013 A G TACC2 Missense_Mutation p.Q2744R 0.14 probably_damaging(0.944) TCGA-HU-A4H4-01 10 124402699 124402699 C T DMBT1 Missense_Mutation p.R2343W 0.06 deleterious(0) probably_damaging(0.958) TCGA-HU-A4H4-01 10 135053206 135053206 C T VENTX Missense_Mutation p.R90W 0.16 deleterious(0) possibly_damaging(0.719) TCGA-HU-A4H4-01 10 13542000 13542000 G T BEND7 Silent p.R24R 0.06 TCGA-HU-A4H4-01 10 15646264 15646264 T G ITGA8 Missense_Mutation p.E687D 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-HU-A4H4-01 10 27459035 27459035 C T MASTL Missense_Mutation p.R383C 0.15 tolerated(0.06) benign(0) TCGA-HU-A4H4-01 10 33165293 33165293 G C C10ORF68 Missense_Mutation p.R620P 0.12 deleterious(0.01) possibly_damaging(0.622) TCGA-HU-A4H4-01 10 35495831 35495831 G A CREM Missense_Mutation p.G203S 0.08 deleterious(0.01) probably_damaging(0.973) TCGA-HU-A4H4-01 10 38406457 38406457 C T ZNF37A Silent p.S126S 0.07 TCGA-HU-A4H4-01 10 38406869 38406869 A G ZNF37A Missense_Mutation p.T264A 0.07 tolerated(0.09) benign(0.022) TCGA-HU-A4H4-01 10 43619164 43619164 A - RET Frame_Shift_Del p.N950Tfs*15 0.10 TCGA-HU-A4H4-01 10 45472806 45472806 C T C10orf10 3'UTR 0.08 TCGA-HU-A4H4-01 10 61572399 61572399 A G CCDC6 Silent p.L281L 0.13 TCGA-HU-A4H4-01 10 61829483 61829483 C T ANK3 Missense_Mutation p.R3719H 0.11 probably_damaging(0.98) TCGA-HU-A4H4-01 10 61833623 61833623 T C ANK3 Missense_Mutation p.Q2339R 0.05 benign(0.026) TCGA-HU-A4H4-01 10 6255618 6255618 G A PFKFB3 Missense_Mutation p.V37I 0.10 possibly_damaging(0.575) TCGA-HU-A4H4-01 10 63170263 63170263 T C TMEM26 Silent p.A308A 0.16 TCGA-HU-A4H4-01 10 69948695 69948695 A G MYPN Missense_Mutation p.M913V 0.08 deleterious(0.01) possibly_damaging(0.54) TCGA-HU-A4H4-01 10 69957155 69957155 C T MYPN Missense_Mutation p.R1069C 0.11 deleterious(0) possibly_damaging(0.893) TCGA-HU-A4H4-01 10 70406188 70406188 A T TET1 Silent p.T1234T 0.12 TCGA-HU-A4H4-01 10 70406221 70406221 G T TET1 Missense_Mutation p.Q1245H 0.16 tolerated(0.73) benign(0.004) TCGA-HU-A4H4-01 10 7213964 7213964 C T SFMBT2 Missense_Mutation p.V770M 0.30 tolerated(0.11) benign(0.161) TCGA-HU-A4H4-01 10 73579295 73579295 T - PSAP Frame_Shift_Del p.N426Tfs*37 0.12 TCGA-HU-A4H4-01 10 73823934 73823934 A G SPOCK2 Splice_Site p.X331_splice 0.17 TCGA-HU-A4H4-01 10 75276635 75276635 C G USP54 Missense_Mutation p.W1183C 0.05 tolerated_low_confidence(0.09) possibly_damaging(0.838) TCGA-HU-A4H4-01 10 81317025 81317025 T G SFTPA2 Silent p.T229T 0.22 TCGA-HU-A4H4-01 10 88446842 88446842 C T LDB3 Missense_Mutation p.R236C 0.13 deleterious(0.01) probably_damaging(0.988) TCGA-HU-A4H4-01 10 89468995 89468995 C A PAPSS2 Missense_Mutation p.H24N 0.09 tolerated(0.1) possibly_damaging(0.812) TCGA-HU-A4H4-01 10 93770836 93770836 G T BTAF1 Missense_Mutation p.Q1370H 0.15 deleterious(0) benign(0.142) TCGA-HU-A4H4-01 10 97194454 97194454 C T SORBS1 Missense_Mutation p.A33T 0.10 tolerated_low_confidence(0.34) benign(0.359) TCGA-HU-A4H4-01 10 97605200 97605200 A C ENTPD1 Missense_Mutation p.Q232H 0.06 deleterious(0) probably_damaging(1) TCGA-HU-A4H4-01 11 111229625 111229625 G A POU2AF1 Missense_Mutation p.A12V 0.08 tolerated(0.12) benign(0.287) TCGA-HU-A4H4-01 11 113630950 113630950 C A ZW10 Missense_Mutation p.W187C 0.13 deleterious(0) probably_damaging(1) TCGA-HU-A4H4-01 11 11400810 11400810 C A GALNT18 Missense_Mutation p.E199D 0.08 tolerated(0.51) benign(0.002) TCGA-HU-A4H4-01 11 114453402 114453402 C T NXPE4 Silent p.A146A 0.17 TCGA-HU-A4H4-01 11 117374715 117374715 T C DSCAML1 Missense_Mutation p.Y795C 0.22 deleterious(0.02) benign(0.019) TCGA-HU-A4H4-01 11 118371815 118371815 A G KMT2A Missense_Mutation p.E2091G 0.09 probably_damaging(0.954) TCGA-HU-A4H4-01 11 118769523 118769523 C T BCL9L Silent p.A1367A 0.06 TCGA-HU-A4H4-01 11 119031359 119031359 T C ABCG4 Missense_Mutation p.Y570H 0.12 deleterious(0) possibly_damaging(0.807) TCGA-HU-A4H4-01 11 120998992 120998992 T A TECTA Missense_Mutation p.L769H 0.20 deleterious(0) benign(0.04) TCGA-HU-A4H4-01 11 12225943 12225943 T C MICAL2 Silent p.L137L 0.08 TCGA-HU-A4H4-01 11 122756782 122756782 C T C11orf63 Silent p.D75D 0.47 TCGA-HU-A4H4-01 11 122774668 122774668 G A C11orf63 Missense_Mutation p.R127H 0.14 deleterious(0) probably_damaging(0.989) TCGA-HU-A4H4-01 11 125851195 125851195 C A CDON Nonsense_Mutation p.G1009* 0.09 TCGA-HU-A4H4-01 11 126136744 126136744 G A SRPR Silent p.N200N 0.12 TCGA-HU-A4H4-01 11 128807638 128807638 T G TP53AIP1 Silent p.R26R 0.05 TCGA-HU-A4H4-01 11 131240691 131240692 - A NTM 5'UTR 0.15 TCGA-HU-A4H4-01 11 1477636 1477636 C A BRSK2 Missense_Mutation p.A622D 0.24 tolerated(0.11) benign(0.098) TCGA-HU-A4H4-01 11 14793532 14793532 A T PDE3B Missense_Mutation p.Q343L 0.12 deleterious(0) probably_damaging(0.928) TCGA-HU-A4H4-01 11 20628577 20628577 T A SLC6A5 Missense_Mutation p.M235K 0.25 deleterious(0.01) benign(0.281) TCGA-HU-A4H4-01 11 214246 214246 C T RIC8A Missense_Mutation p.P504S 0.14 deleterious(0.02) probably_damaging(1) TCGA-HU-A4H4-01 11 21594807 21594807 G A NELL1 Missense_Mutation p.C745Y 0.19 deleterious(0) probably_damaging(1) TCGA-HU-A4H4-01 11 33083248 33083248 C T TCP11L1 Silent p.D316D 0.11 TCGA-HU-A4H4-01 11 45672305 45672305 G T CHST1 Missense_Mutation p.L57I 0.16 tolerated(0.24) benign(0.008) TCGA-HU-A4H4-01 11 46812089 46812089 G A CKAP5 Silent p.G565G 0.15 TCGA-HU-A4H4-01 11 49974000 49974000 A G OR4C13 Missense_Mutation p.E9G 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.796) TCGA-HU-A4H4-01 11 50003299 50003299 A C OR4C12 Missense_Mutation p.L247V 0.27 deleterious_low_confidence(0) possibly_damaging(0.447) TCGA-HU-A4H4-01 11 5510028 5510028 C T OR52D1 Missense_Mutation p.A31V 0.15 deleterious(0.02) benign(0.016) TCGA-HU-A4H4-01 11 56113902 56113902 G A OR8K1 Missense_Mutation p.V130I 0.05 deleterious_low_confidence(0) possibly_damaging(0.565) TCGA-HU-A4H4-01 11 56184755 56184755 T A OR5R1 Missense_Mutation p.L318F 0.17 tolerated_low_confidence(0.09) benign(0.001) TCGA-HU-A4H4-01 11 58190401 58190401 A T OR5B2 Missense_Mutation p.L112M 0.30 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-HU-A4H4-01 11 5969479 5969479 A T OR56A3 Missense_Mutation p.Q301H 0.42 tolerated(0.11) benign(0.013) TCGA-HU-A4H4-01 11 6023669 6023669 A G OR56A4 Missense_Mutation p.L237P 0.18 deleterious(0.02) possibly_damaging(0.894) TCGA-HU-A4H4-01 11 61490943 61490943 G A DAGLA Silent p.V149V 0.13 TCGA-HU-A4H4-01 11 61631266 61631266 C T FADS2 Intron 0.14 TCGA-HU-A4H4-01 11 62358925 62358925 C T TUT1 Silent p.L49L 0.16 TCGA-HU-A4H4-01 11 65685438 65685438 C A C11orf68 Missense_Mutation p.G125V 0.21 deleterious(0.02) probably_damaging(0.987) TCGA-HU-A4H4-01 11 6631877 6631877 C T ILK 3'UTR 0.11 TCGA-HU-A4H4-01 11 66407488 66407488 T C RBM4 Silent p.G102G 0.09 TCGA-HU-A4H4-01 11 6662259 6662259 G A DCHS1 Missense_Mutation p.R196C 0.07 deleterious(0) probably_damaging(0.997) TCGA-HU-A4H4-01 11 67076921 67076921 G A SSH3 Missense_Mutation p.R372H 0.06 tolerated(0.57) benign(0.059) TCGA-HU-A4H4-01 11 67270120 67270120 C A PITPNM1 Missense_Mutation p.D50Y 0.09 deleterious(0) probably_damaging(0.993) TCGA-HU-A4H4-01 11 67270134 67270134 T G PITPNM1 Missense_Mutation p.N45T 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-HU-A4H4-01 11 70253656 70253656 T C CTTN Silent p.G40G 0.15 TCGA-HU-A4H4-01 11 74546898 74546898 G A RNF169 Missense_Mutation p.S417N 0.06 deleterious(0) benign(0.288) TCGA-HU-A4H4-01 11 74716711 74716711 A G NEU3 Missense_Mutation p.K187R 0.10 tolerated(0.16) benign(0.015) TCGA-HU-A4H4-01 11 800377 800377 C T PIDD Missense_Mutation p.V706M 0.18 deleterious(0) possibly_damaging(0.891) TCGA-HU-A4H4-01 11 90602287 90602287 C G MIR1261 3'Flank 0.06 TCGA-HU-A4H4-01 12 100042081 100042081 A T FAM71C Silent p.A43A 0.05 TCGA-HU-A4H4-01 12 106461727 106461727 C T NUAK1 Missense_Mutation p.R280Q 0.10 tolerated(0.23) probably_damaging(0.999) TCGA-HU-A4H4-01 12 106827564 106827564 A G POLR3B Silent p.A565A 0.28 TCGA-HU-A4H4-01 12 10786645 10786645 A G STYK1 Missense_Mutation p.I44T 0.08 deleterious(0) probably_damaging(0.997) TCGA-HU-A4H4-01 12 111758153 111758153 C T CUX2 Silent p.G780G 0.17 TCGA-HU-A4H4-01 12 114841616 114841616 T C TBX5 Missense_Mutation p.S30G 0.06 tolerated(0.41) benign(0) TCGA-HU-A4H4-01 12 133306511 133306511 C T ANKLE2 Missense_Mutation p.R746H 0.38 tolerated(0.08) benign(0.117) TCGA-HU-A4H4-01 12 15130994 15130994 T C PDE6H Silent p.P16P 0.15 TCGA-HU-A4H4-01 12 19410381 19410381 A - PLEKHA5 Frame_Shift_Del p.V152Ffs*33 0.14 TCGA-HU-A4H4-01 12 23999114 23999114 T C SOX5 Missense_Mutation p.N95S 0.22 tolerated(0.52) benign(0.003) TCGA-HU-A4H4-01 12 27834507 27834507 A G PPFIBP1 Missense_Mutation p.T648A 0.10 deleterious(0.03) possibly_damaging(0.588) TCGA-HU-A4H4-01 12 333661 333661 A G SLC6A13 Missense_Mutation p.I360T 0.11 deleterious(0) probably_damaging(1) TCGA-HU-A4H4-01 12 39745580 39745580 T - KIF21A Frame_Shift_Del p.R558Gfs*42 0.12 TCGA-HU-A4H4-01 12 41327326 41327326 G A CNTN1 Missense_Mutation p.G256D 0.16 deleterious(0.02) benign(0.15) TCGA-HU-A4H4-01 12 42858731 42858731 C T PRICKLE1 Missense_Mutation p.D369N 0.07 deleterious(0.02) possibly_damaging(0.735) TCGA-HU-A4H4-01 12 48371411 48371411 G - COL2A1 Frame_Shift_Del p.P1046Lfs*84 0.09 TCGA-HU-A4H4-01 12 48534510 48534510 T C PFKM Silent p.G470G 0.05 TCGA-HU-A4H4-01 12 49406895 49406895 T C PRKAG1 Splice_Site p.X4_splice 0.06 TCGA-HU-A4H4-01 12 49690007 49690007 G A PRPH Missense_Mutation p.V198M 0.15 tolerated(0.19) possibly_damaging(0.879) TCGA-HU-A4H4-01 12 50575791 50575791 G A LIMA1 Silent p.C391C 0.13 TCGA-HU-A4H4-01 12 52200910 52200910 A G SCN8A Silent p.K1880K 0.12 TCGA-HU-A4H4-01 12 53040639 53040639 C A KRT2 Missense_Mutation p.A452S 0.13 tolerated(0.07) possibly_damaging(0.833) TCGA-HU-A4H4-01 12 53442845 53442845 T C TENC1 5'UTR 0.39 TCGA-HU-A4H4-01 12 55042151 55042151 A G DCD 5'UTR 0.12 TCGA-HU-A4H4-01 12 56537797 56537797 C T ESYT1 3'UTR 0.27 TCGA-HU-A4H4-01 12 56872948 56872948 A G GLS2 Missense_Mutation p.I141T 0.11 tolerated(0.06) benign(0.021) TCGA-HU-A4H4-01 12 57064084 57064084 A G PTGES3 Missense_Mutation p.M117T 0.05 deleterious(0.02) benign(0.002) TCGA-HU-A4H4-01 12 57396722 57396722 C T ZBTB39 Missense_Mutation p.M660I 0.08 deleterious(0) probably_damaging(0.914) TCGA-HU-A4H4-01 12 58158953 58158953 C A CYP27B1 Nonsense_Mutation p.E211* 0.10 TCGA-HU-A4H4-01 12 59308081 59308081 T C LRIG3 Silent p.A91A 0.16 TCGA-HU-A4H4-01 12 62148754 62148754 C T FAM19A2 Missense_Mutation p.C53Y 0.08 deleterious(0) probably_damaging(1) TCGA-HU-A4H4-01 12 7031296 7031296 C T ENO2 Missense_Mutation p.A382V 0.15 deleterious_low_confidence(0.02) possibly_damaging(0.621) TCGA-HU-A4H4-01 12 71833904 71833904 T C LGR5 Missense_Mutation p.L15P 0.10 deleterious_low_confidence(0.01) benign(0.001) TCGA-HU-A4H4-01 12 75436122 75436122 T G KCNC2 3'UTR 0.16 TCGA-HU-A4H4-01 12 75692521 75692521 A G CAPS2 Silent p.S349S 0.12 TCGA-HU-A4H4-01 12 8904616 8904616 T G RIMKLB Missense_Mutation p.V157G 0.18 deleterious(0) probably_damaging(0.998) TCGA-HU-A4H4-01 13 100909900 100909900 G A PCCA Missense_Mutation p.R230H 0.14 deleterious(0) possibly_damaging(0.851) TCGA-HU-A4H4-01 13 102105171 102105171 C A ITGBL1 5'UTR 0.08 TCGA-HU-A4H4-01 13 103443722 103443722 T - KDELC1 Frame_Shift_Del p.K244Rfs*23 0.09 TCGA-HU-A4H4-01 13 20978274 20978274 G T CRYL1 Silent p.P318P 0.06 TCGA-HU-A4H4-01 13 26788301 26788301 T G RNF6 Missense_Mutation p.N573T 0.11 tolerated(0.34) benign(0.276) TCGA-HU-A4H4-01 13 31205337 31205337 A C USPL1 Missense_Mutation p.R198S 0.13 tolerated(0.73) benign(0.002) TCGA-HU-A4H4-01 13 31232640 31232640 G A USPL1 Missense_Mutation p.S809N 0.07 tolerated(0.81) benign(0.002) TCGA-HU-A4H4-01 13 37446863 37446863 G A SMAD9 Missense_Mutation p.P201L 0.10 deleterious(0.04) benign(0.028) TCGA-HU-A4H4-01 13 37581201 37581201 A - EXOSC8 Frame_Shift_Del p.N162Mfs*9 0.20 TCGA-HU-A4H4-01 13 50095043 50095043 C T PHF11 Nonsense_Mutation p.Q158* 0.10 TCGA-HU-A4H4-01 13 52952670 52952670 A G THSD1 Missense_Mutation p.S479P 0.06 deleterious(0) possibly_damaging(0.866) TCGA-HU-A4H4-01 13 78477385 78477385 T G EDNRB Missense_Mutation p.E326A 0.13 tolerated(0.06) benign(0.437) TCGA-HU-A4H4-01 13 99100538 99100538 C T FARP1 Silent p.H1035H 0.08 TCGA-HU-A4H4-01 14 102505767 102505767 T C DYNC1H1 Missense_Mutation p.Y3827H 0.16 probably_damaging(0.927) TCGA-HU-A4H4-01 14 104641626 104641626 A T KIF26A Missense_Mutation p.D834V 0.17 deleterious(0) probably_damaging(0.997) TCGA-HU-A4H4-01 14 105414753 105414753 C T AHNAK2 Silent p.A2345A 0.11 TCGA-HU-A4H4-01 14 105461165 105461165 C G C14orf79 3'UTR 0.32 TCGA-HU-A4H4-01 14 20483284 20483284 A G OR4K14 Silent p.L23L 0.20 TCGA-HU-A4H4-01 14 21896152 21896152 G A CHD8 Missense_Mutation p.R493W 0.41 deleterious(0.01) possibly_damaging(0.756) TCGA-HU-A4H4-01 14 23874886 23874886 G A MYH6 Missense_Mutation p.P99S 0.20 deleterious(0.02) probably_damaging(0.977) TCGA-HU-A4H4-01 14 31119854 31119854 C T SCFD1 Silent p.F251F 0.07 TCGA-HU-A4H4-01 14 35264077 35264077 G T BAZ1A Missense_Mutation p.T414K 0.12 deleterious(0.01) probably_damaging(0.95) TCGA-HU-A4H4-01 14 45398293 45398293 T G KLHL28 Missense_Mutation p.T552P 0.05 tolerated(0.23) possibly_damaging(0.555) TCGA-HU-A4H4-01 14 59113504 59113504 T C DACT1 Silent p.A721A 0.09 TCGA-HU-A4H4-01 14 59954418 59954418 T A JKAMP Missense_Mutation p.N41K 0.08 deleterious(0.01) benign(0.279) TCGA-HU-A4H4-01 14 63483580 63483580 C T KCNH5 Missense_Mutation p.A56T 0.08 deleterious(0.02) probably_damaging(0.999) TCGA-HU-A4H4-01 14 64988534 64988534 A G ZBTB1 Silent p.L104L 0.05 TCGA-HU-A4H4-01 14 65419254 65419254 C A RAB15 Missense_Mutation p.G54C 0.06 deleterious(0) probably_damaging(0.985) TCGA-HU-A4H4-01 14 69707665 69707665 C A EXD2 Missense_Mutation p.L572M 0.11 deleterious(0) probably_damaging(0.996) TCGA-HU-A4H4-01 14 74874344 74874344 C T SYNDIG1L Missense_Mutation p.R204H 0.13 deleterious(0) probably_damaging(0.998) TCGA-HU-A4H4-01 14 75746494 75746494 C T FOS Intron 0.08 TCGA-HU-A4H4-01 14 78140225 78140225 G A ALKBH1 Missense_Mutation p.T367I 0.07 tolerated_low_confidence(0.07) benign(0.002) TCGA-HU-A4H4-01 14 78174499 78174499 T C SLIRP Silent p.S15S 0.14 TCGA-HU-A4H4-01 14 93717898 93717898 G A BTBD7 Missense_Mutation p.A618V 0.13 tolerated(0.06) benign(0.079) TCGA-HU-A4H4-01 15 102211872 102211872 A G TARSL2 Splice_Site p.X622_splice 0.15 TCGA-HU-A4H4-01 15 29561233 29561233 T C NDNL2 Missense_Mutation p.D226G 0.11 deleterious(0.02) benign(0.084) TCGA-HU-A4H4-01 15 30019143 30019143 T C TJP1 Missense_Mutation p.Y718C 0.16 deleterious(0) probably_damaging(0.97) TCGA-HU-A4H4-01 15 35176884 35176884 T C AQR Missense_Mutation p.T957A 0.12 tolerated(0.71) benign(0.001) TCGA-HU-A4H4-01 15 38632046 38632046 T C SPRED1 Missense_Mutation p.F178L 0.16 tolerated(0.4) benign(0.016) TCGA-HU-A4H4-01 15 41192972 41192972 C T VPS18 Silent p.C652C 0.22 TCGA-HU-A4H4-01 15 42434265 42434265 C T PLA2G4F Missense_Mutation p.V823I 0.12 tolerated(0.62) benign(0.013) TCGA-HU-A4H4-01 15 45398766 45398766 T G DUOX2 Missense_Mutation p.K635N 0.04 tolerated(0.3) possibly_damaging(0.511) TCGA-HU-A4H4-01 15 60740299 60740299 T C NARG2 Missense_Mutation p.Y722C 0.12 deleterious(0) probably_damaging(0.989) TCGA-HU-A4H4-01 15 73562761 73562761 G A NEO1 Nonsense_Mutation p.W941* 0.11 TCGA-HU-A4H4-01 15 79058532 79058532 G A ADAMTS7 Missense_Mutation p.P1241S 0.14 tolerated(0.09) benign(0.035) TCGA-HU-A4H4-01 15 83710649 83710649 G C BTBD1 Missense_Mutation p.D231E 0.06 tolerated(0.53) probably_damaging(0.981) TCGA-HU-A4H4-01 15 83876145 83876145 C T HDGFRP3 Missense_Mutation p.E8K 0.24 tolerated(0.13) benign(0.015) TCGA-HU-A4H4-01 15 86278836 86278836 C T AKAP13 Missense_Mutation p.T2500M 0.28 deleterious(0.01) probably_damaging(0.983) TCGA-HU-A4H4-01 15 88680633 88680633 A G NTRK3 Splice_Site p.X208_splice 0.29 TCGA-HU-A4H4-01 15 89074729 89074729 G A DET1 Missense_Mutation p.R81C 0.22 deleterious(0) possibly_damaging(0.855) TCGA-HU-A4H4-01 15 89826401 89826401 T - FANCI Frame_Shift_Del p.L541Cfs*4 0.19 TCGA-HU-A4H4-01 15 90039599 90039599 G T RHCG Silent p.R59R 0.05 TCGA-HU-A4H4-01 15 91462922 91462922 T G MAN2A2 Missense_Mutation p.L1120V 0.12 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H4-01 16 1035326 1035326 C T SOX8 Silent p.P427P 0.18 TCGA-HU-A4H4-01 16 12758926 12758926 A G CPPED1 Silent p.G254G 0.10 TCGA-HU-A4H4-01 16 18597253 18597253 C G ABCC6P1 RNA 0.32 TCGA-HU-A4H4-01 16 21666562 21666562 G T METTL9 Nonsense_Mutation p.E256* 0.17 TCGA-HU-A4H4-01 16 2903195 2903195 C T PRSS22 Missense_Mutation p.V285M 0.11 deleterious(0) probably_damaging(0.954) TCGA-HU-A4H4-01 16 29853066 29853066 G T MVP Missense_Mutation p.Q447H 0.13 tolerated(0.09) benign(0) TCGA-HU-A4H4-01 16 4492299 4492299 G A DNAJA3 Missense_Mutation p.A221T 0.24 deleterious(0) probably_damaging(0.971) TCGA-HU-A4H4-01 16 4723651 4723651 C T MGRN1 Silent p.C316C 0.17 TCGA-HU-A4H4-01 16 4787857 4787857 T C C16orf71 Silent p.I62I 0.06 TCGA-HU-A4H4-01 16 4924265 4924265 T C UBN1 Silent p.G618G 0.12 TCGA-HU-A4H4-01 16 53296901 53296901 G A CHD9 Silent p.A1404A 0.18 TCGA-HU-A4H4-01 16 55362689 55362689 G A IRX6 Missense_Mutation p.E267K 0.07 tolerated(0.55) probably_damaging(0.954) TCGA-HU-A4H4-01 16 58589340 58589340 A - CNOT1 Frame_Shift_Del p.Q904Sfs*9 0.14 TCGA-HU-A4H4-01 16 70016342 70016342 T C PDXDC2P RNA 0.11 TCGA-HU-A4H4-01 16 70902515 70902515 G A HYDIN Silent p.D3756D 0.27 TCGA-HU-A4H4-01 16 71570602 71570602 A G CHST4 Missense_Mutation p.K8E 0.23 tolerated(0.86) benign(0.184) TCGA-HU-A4H4-01 16 71668207 71668207 A G MARVELD3 Intron 0.08 TCGA-HU-A4H4-01 16 72124653 72124653 A G TXNL4B 5'UTR 0.10 TCGA-HU-A4H4-01 16 72993579 72993579 C T ZFHX3 Missense_Mutation p.A156T 0.17 benign(0.238) TCGA-HU-A4H4-01 16 77327097 77327097 G A ADAMTS18 Missense_Mutation p.A1022V 0.13 tolerated(0.29) benign(0.005) TCGA-HU-A4H4-01 16 83704413 83704413 G A CDH13 Missense_Mutation p.E421K 0.22 deleterious(0) probably_damaging(0.997) TCGA-HU-A4H4-01 16 89831352 89831352 G C FANCA Silent p.L908L 0.11 TCGA-HU-A4H4-01 17 17122405 17122405 G T FLCN Silent p.S330S 0.09 TCGA-HU-A4H4-01 17 17721095 17721095 G T SREBF1 Missense_Mutation p.P470H 0.20 tolerated(0.12) probably_damaging(0.994) TCGA-HU-A4H4-01 17 19641438 19641438 T G ALDH3A1 3'UTR 0.36 TCGA-HU-A4H4-01 17 19729453 19729453 T - ULK2 Frame_Shift_Del p.K278Nfs*130 0.11 TCGA-HU-A4H4-01 17 2278838 2278838 A C SGSM2 Missense_Mutation p.D718A 0.05 tolerated(0.2) benign(0.003) TCGA-HU-A4H4-01 17 2279518 2279518 C - SGSM2 Frame_Shift_Del p.N860Tfs*50 0.21 TCGA-HU-A4H4-01 17 26097971 26097971 A G NOS2 Missense_Mutation p.F593L 0.17 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H4-01 17 28616399 28616399 A - BLMH Frame_Shift_Del p.W105Gfs*11 0.20 TCGA-HU-A4H4-01 17 3030732 3030732 C T OR1G1 Silent p.T38T 0.40 TCGA-HU-A4H4-01 17 31048090 31048090 G A MYO1D Missense_Mutation p.R622C 0.19 deleterious(0) probably_damaging(1) TCGA-HU-A4H4-01 17 33269816 33269816 T G CCT6B Missense_Mutation p.T242P 0.22 tolerated(0.05) benign(0.065) TCGA-HU-A4H4-01 17 36940538 36940538 T C PIP4K2B Silent p.R104R 0.15 TCGA-HU-A4H4-01 17 37564679 37564679 G T MED1 Silent p.S1265S 0.06 TCGA-HU-A4H4-01 17 37565515 37565515 C T MED1 Missense_Mutation p.G987R 0.11 deleterious_low_confidence(0) possibly_damaging(0.638) TCGA-HU-A4H4-01 17 37687432 37687432 G T CDK12 Nonsense_Mutation p.G1446* 0.05 TCGA-HU-A4H4-01 17 3787183 3787183 G A CAMKK1 Missense_Mutation p.H153Y 0.18 tolerated(1) benign(0.008) TCGA-HU-A4H4-01 17 3937503 3937503 A G ZZEF1 Silent p.N2130N 0.17 TCGA-HU-A4H4-01 17 40001522 40001522 T C KLHL10 Missense_Mutation p.S277P 0.27 tolerated(0.11) benign(0.04) TCGA-HU-A4H4-01 17 42114877 42114877 T - LSM12 Frame_Shift_Del p.N133Tfs*3 0.10 TCGA-HU-A4H4-01 17 42266499 42266499 T C TMUB2 Silent p.L49L 0.04 TCGA-HU-A4H4-01 17 42635342 42635342 T C FZD2 Missense_Mutation p.Y96H 0.10 deleterious(0) probably_damaging(0.997) TCGA-HU-A4H4-01 17 42849123 42849123 G T ADAM11 Splice_Site p.X156_splice 0.18 TCGA-HU-A4H4-01 17 43005672 43005672 G T KIF18B Silent p.T666T 0.16 TCGA-HU-A4H4-01 17 4536510 4536510 C T ALOX15 Missense_Mutation p.R450Q 0.42 deleterious(0.02) probably_damaging(0.978) TCGA-HU-A4H4-01 17 46654092 46654092 C T HOXB4 Missense_Mutation p.A250T 0.25 tolerated_low_confidence(0.41) unknown(0) TCGA-HU-A4H4-01 17 4798752 4798752 G T MINK1 Missense_Mutation p.V1065L 0.17 deleterious(0.01) probably_damaging(0.994) TCGA-HU-A4H4-01 17 48827881 48827882 - A LUC7L3 Frame_Shift_Ins p.S389Kfs*2 0.14 TCGA-HU-A4H4-01 17 49346264 49346264 T A UTP18 Missense_Mutation p.D207E 0.10 tolerated(0.54) benign(0.015) TCGA-HU-A4H4-01 17 53398104 53398104 A G HLF Missense_Mutation p.N251S 0.09 deleterious(0) probably_damaging(0.992) TCGA-HU-A4H4-01 17 5424952 5424952 G A NLRP1 Silent p.A1225A 0.08 TCGA-HU-A4H4-01 17 57168701 57168701 G A TRIM37 Missense_Mutation p.R42C 0.40 deleterious(0) probably_damaging(0.998) TCGA-HU-A4H4-01 17 60107230 60107230 A G MED13 Missense_Mutation p.M385T 0.06 tolerated(0.09) benign(0.006) TCGA-HU-A4H4-01 17 61907726 61907726 G A PSMC5 Missense_Mutation p.M139I 0.12 tolerated(0.18) benign(0.094) TCGA-HU-A4H4-01 17 61908549 61908549 A C PSMC5 Missense_Mutation p.N278T 0.06 tolerated(0.06) probably_damaging(0.938) TCGA-HU-A4H4-01 17 61988131 61988131 T G CSHL1 Missense_Mutation p.Q55P 0.04 deleterious(0.03) probably_damaging(0.964) TCGA-HU-A4H4-01 17 6930312 6930312 A C BCL6B Missense_Mutation p.K410T 0.10 deleterious(0) probably_damaging(0.963) TCGA-HU-A4H4-01 17 73806045 73806045 C T UNK Silent p.G103G 0.07 TCGA-HU-A4H4-01 17 74136102 74136102 C T FOXJ1 Silent p.S125S 0.12 TCGA-HU-A4H4-01 17 7577130 7577130 A G TP53 Missense_Mutation p.F270L 0.33 deleterious(0) probably_damaging(0.973) TCGA-HU-A4H4-01 17 76799589 76799589 C T USP36 Silent p.V896V 0.11 TCGA-HU-A4H4-01 17 7722644 7722644 A G DNAH2 Missense_Mutation p.S3645G 0.07 probably_damaging(0.978) TCGA-HU-A4H4-01 17 7810228 7810228 G A CHD3 Silent p.P1574P 0.15 TCGA-HU-A4H4-01 17 79429898 79429898 A G RP11-1055B8.7 Missense_Mutation p.I2506V 0.07 benign(0.175) TCGA-HU-A4H4-01 17 80195437 80195437 C T SLC16A3 Missense_Mutation p.A264V 0.29 deleterious(0) probably_damaging(1) TCGA-HU-A4H4-01 17 80579670 80579670 A G WDR45B Missense_Mutation p.C145R 0.28 deleterious(0) probably_damaging(0.992) TCGA-HU-A4H4-01 17 8216523 8216523 C - ARHGEF15 Frame_Shift_Del p.P297Hfs*39 0.08 TCGA-HU-A4H4-01 17 8370385 8370385 C T NDEL1 3'UTR 0.10 TCGA-HU-A4H4-01 18 18629775 18629775 A G ROCK1 Missense_Mutation p.V81A 0.17 deleterious(0) probably_damaging(0.973) TCGA-HU-A4H4-01 18 19282376 19282376 C T ABHD3 Missense_Mutation p.S137N 0.09 tolerated(0.14) benign(0.002) TCGA-HU-A4H4-01 18 19751448 19751448 T C GATA6 Missense_Mutation p.F115L 0.15 deleterious(0.05) benign(0.014) TCGA-HU-A4H4-01 18 21107837 21107837 A G C18orf8 Missense_Mutation p.Y423C 0.10 tolerated(0.07) possibly_damaging(0.884) TCGA-HU-A4H4-01 18 21112137 21112137 C T NPC1 3'UTR 0.06 TCGA-HU-A4H4-01 18 22902077 22902077 C - ZNF521 Frame_Shift_Del p.E39Rfs*21 0.21 TCGA-HU-A4H4-01 18 28711638 28711638 G A DSC1 Silent p.S802S 0.05 TCGA-HU-A4H4-01 18 42530560 42530560 A - SETBP1 Frame_Shift_Del p.R421Dfs*23 0.26 TCGA-HU-A4H4-01 18 48591919 48591919 G A SMAD4 Missense_Mutation p.R361H 0.21 deleterious(0.03) probably_damaging(1) TCGA-HU-A4H4-01 18 56620958 56620958 C T ZNF532 Missense_Mutation p.T1026M 0.10 deleterious(0.05) probably_damaging(0.953) TCGA-HU-A4H4-01 18 70209167 70209167 C T CBLN2 Missense_Mutation p.A77T 0.44 tolerated(0.33) benign(0.003) TCGA-HU-A4H4-01 18 747955 747955 A G YES1 Silent p.N145N 0.13 TCGA-HU-A4H4-01 18 9944930 9944930 C A VAPA Missense_Mutation p.P143T 0.22 tolerated(0.23) benign(0.001) TCGA-HU-A4H4-01 19 10249186 10249186 G A DNMT1 Silent p.H1348H 0.09 TCGA-HU-A4H4-01 19 10335474 10335474 G A S1PR2 Silent p.A36A 0.11 TCGA-HU-A4H4-01 19 11097671 11097671 G T SMARCA4 Missense_Mutation p.W284L 0.17 possibly_damaging(0.901) TCGA-HU-A4H4-01 19 12576221 12576221 T C ZNF709 Missense_Mutation p.Q172R 0.07 tolerated(0.09) benign(0.089) TCGA-HU-A4H4-01 19 12692000 12692000 C T ZNF490 Missense_Mutation p.E297K 0.13 tolerated(0.12) possibly_damaging(0.817) TCGA-HU-A4H4-01 19 12883842 12883842 A G HOOK2 Missense_Mutation p.M74T 0.06 tolerated(0.13) benign(0.001) TCGA-HU-A4H4-01 19 15300208 15300208 G T NOTCH3 Silent p.V356V 0.06 TCGA-HU-A4H4-01 19 17330626 17330626 C - USE1 3'UTR 0.09 TCGA-HU-A4H4-01 19 19030060 19030060 T C COPE Missense_Mutation p.Q33R 0.12 tolerated(0.07) possibly_damaging(0.549) TCGA-HU-A4H4-01 19 19136068 19136068 A G SUGP2 Silent p.A363A 0.13 TCGA-HU-A4H4-01 19 22585671 22585671 T G ZNF98 Missense_Mutation p.K58T 0.18 deleterious(0.01) probably_damaging(0.932) TCGA-HU-A4H4-01 19 22817261 22817261 T C ZNF492 5'UTR 0.12 TCGA-HU-A4H4-01 19 30934931 30934931 C T ZNF536 Silent p.G154G 0.08 TCGA-HU-A4H4-01 19 35251333 35251333 C T ZNF599 Missense_Mutation p.E125K 0.16 tolerated(0.11) benign(0.114) TCGA-HU-A4H4-01 19 35940885 35940885 A G FFAR2 Missense_Mutation p.Y90C 0.13 deleterious(0) probably_damaging(1) TCGA-HU-A4H4-01 19 3738575 3738575 A G TJP3 Missense_Mutation p.N445S 0.07 tolerated(0.12) benign(0.015) TCGA-HU-A4H4-01 19 37398892 37398892 T C ZNF829 Silent p.L167L 0.14 TCGA-HU-A4H4-01 19 3976713 3976713 C T EEF2 Missense_Mutation p.G806S 0.27 deleterious(0.01) probably_damaging(1) TCGA-HU-A4H4-01 19 41884396 41884397 - G TMEM91 Frame_Shift_Ins p.E63Gfs*6 0.12 TCGA-HU-A4H4-01 19 43372142 43372142 T G PSG1 3'UTR 0.16 TCGA-HU-A4H4-01 19 44471162 44471162 A - ZNF221 Frame_Shift_Del p.K504Nfs*75 0.18 TCGA-HU-A4H4-01 19 44981523 44981523 C T ZNF180 Missense_Mutation p.R392Q 0.17 tolerated(0.8) possibly_damaging(0.82) TCGA-HU-A4H4-01 19 46056830 46056830 G A OPA3 Intron 0.12 TCGA-HU-A4H4-01 19 46215158 46215158 C T FBXO46 Silent p.Q532Q 0.15 TCGA-HU-A4H4-01 19 46318382 46318382 C T RSPH6A Missense_Mutation p.R18Q 0.18 deleterious_low_confidence(0.02) benign(0.005) TCGA-HU-A4H4-01 19 46393902 46393902 G A MYPOP Silent p.R393R 0.11 TCGA-HU-A4H4-01 19 47124717 47124717 G T PTGIR Silent p.A327A 0.06 TCGA-HU-A4H4-01 19 48244374 48244374 C T EHD2 Silent p.D439D 0.15 TCGA-HU-A4H4-01 19 48801351 48801351 A G CCDC114 Missense_Mutation p.F433L 0.09 tolerated(0.34) benign(0.002) TCGA-HU-A4H4-01 19 49651942 49651942 A C PPFIA3 Missense_Mutation p.I1011L 0.17 deleterious(0.03) benign(0.063) TCGA-HU-A4H4-01 19 49934368 49934368 C T SLC17A7 Silent p.P431P 0.11 TCGA-HU-A4H4-01 19 50925742 50925742 G A SPIB Missense_Mutation p.V22I 0.17 tolerated(0.4) benign(0.005) TCGA-HU-A4H4-01 19 51499377 51499377 C T KLK8 Missense_Mutation p.V286I 0.17 deleterious(0.02) benign(0.185) TCGA-HU-A4H4-01 19 53344851 53344851 T - ZNF468 Frame_Shift_Del p.K232Nfs*4 0.15 TCGA-HU-A4H4-01 19 54968952 54968952 C T LENG8 Silent p.V586V 0.04 TCGA-HU-A4H4-01 19 57724326 57724326 A C ZNF264 Missense_Mutation p.T621P 0.11 deleterious_low_confidence(0.03) benign(0.031) TCGA-HU-A4H4-01 19 58757689 58757689 T C ZNF544 Missense_Mutation p.V19A 0.19 deleterious(0) probably_damaging(0.983) TCGA-HU-A4H4-01 19 6754871 6754871 C T SH2D3A Missense_Mutation p.A318T 0.09 deleterious(0.02) benign(0.136) TCGA-HU-A4H4-01 19 9362606 9362606 A G OR7E24 Missense_Mutation p.Y296C 0.11 deleterious(0.02) probably_damaging(1) TCGA-HU-A4H4-01 1 104117936 104117936 G T AMY2B Nonsense_Mutation p.G324* 0.16 TCGA-HU-A4H4-01 1 109560141 109560141 T - WDR47 Frame_Shift_Del p.R81Gfs*7 0.09 TCGA-HU-A4H4-01 1 110086505 110086505 G T GPR61 Silent p.V287V 0.15 TCGA-HU-A4H4-01 1 110741092 110741092 T C SLC6A17 3'UTR 0.15 TCGA-HU-A4H4-01 1 113655265 113655265 C A LRIG2 Missense_Mutation p.P655T 0.06 deleterious(0.02) possibly_damaging(0.673) TCGA-HU-A4H4-01 1 117699342 117699342 C T VTCN1 Missense_Mutation p.R100Q 0.21 deleterious(0.03) possibly_damaging(0.668) TCGA-HU-A4H4-01 1 12337845 12337845 A C VPS13D Silent p.G1400G 0.06 TCGA-HU-A4H4-01 1 145530913 145530913 T C ITGA10 Silent p.H215H 0.09 TCGA-HU-A4H4-01 1 148341973 148341973 A G NBPF20 Silent p.P200P 0.04 TCGA-HU-A4H4-01 1 150258895 150258895 G A C1orf51 Missense_Mutation p.M229I 0.12 tolerated(0.41) benign(0.008) TCGA-HU-A4H4-01 1 150300910 150300910 G T PRPF3 Missense_Mutation p.M136I 0.10 tolerated(0.44) benign(0) TCGA-HU-A4H4-01 1 151774638 151774638 C T LINGO4 Silent p.K181K 0.13 TCGA-HU-A4H4-01 1 152279059 152279059 T G FLG Missense_Mutation p.E2768A 0.04 benign(0.341) TCGA-HU-A4H4-01 1 152648653 152648653 C T LCE2C Silent p.S54S 0.11 TCGA-HU-A4H4-01 1 153029130 153029130 G T SPRR2A Missense_Mutation p.P28T 0.13 tolerated_low_confidence(0.13) unknown(0) TCGA-HU-A4H4-01 1 153609082 153609082 G A CHTOP Silent p.A6A 0.10 TCGA-HU-A4H4-01 1 153800775 153800775 T A GATAD2B Missense_Mutation p.S17C 0.12 deleterious(0) possibly_damaging(0.593) TCGA-HU-A4H4-01 1 153914362 153914362 G A DENND4B Silent p.H346H 0.05 TCGA-HU-A4H4-01 1 155171231 155171231 G A THBS3 Missense_Mutation p.R436C 0.15 deleterious(0) probably_damaging(0.988) TCGA-HU-A4H4-01 1 155233108 155233108 C T CLK2 Silent p.R466R 0.07 TCGA-HU-A4H4-01 1 155317563 155317563 T C ASH1L Missense_Mutation p.S2563G 0.04 deleterious_low_confidence(0.02) probably_damaging(0.99) TCGA-HU-A4H4-01 1 156263836 156263836 G A C1orf85 Silent p.D257D 0.12 TCGA-HU-A4H4-01 1 158436275 158436275 T A OR10K1 Silent p.T308T 0.10 TCGA-HU-A4H4-01 1 158592947 158592947 T C SPTA1 Silent p.Q1982Q 0.20 TCGA-HU-A4H4-01 1 158617367 158617367 A C SPTA1 Missense_Mutation p.N1286K 0.17 tolerated(0.73) benign(0.015) TCGA-HU-A4H4-01 1 158627418 158627418 C T SPTA1 Missense_Mutation p.R885H 0.12 tolerated(0.08) benign(0.007) TCGA-HU-A4H4-01 1 159785385 159785385 G A FCRL6 Silent p.T413T 0.14 TCGA-HU-A4H4-01 1 160607221 160607221 T C SLAMF1 Missense_Mutation p.S59G 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-HU-A4H4-01 1 162724598 162724598 C T DDR2 Missense_Mutation p.R124W 0.18 deleterious(0) probably_damaging(1) TCGA-HU-A4H4-01 1 16352735 16352735 G A CLCNKA Missense_Mutation p.G164D 0.07 deleterious(0) probably_damaging(0.99) TCGA-HU-A4H4-01 1 169831834 169831834 G A SCYL3 Missense_Mutation p.R354W 0.09 deleterious(0) probably_damaging(1) TCGA-HU-A4H4-01 1 175087876 175087876 A G TNN Missense_Mutation p.R856G 0.11 tolerated(0.06) possibly_damaging(0.752) TCGA-HU-A4H4-01 1 180832973 180832973 A G XPR1 Missense_Mutation p.N544S 0.19 deleterious(0.02) possibly_damaging(0.838) TCGA-HU-A4H4-01 1 183083734 183083734 G - LAMC1 Frame_Shift_Del p.G365Afs*42 0.16 TCGA-HU-A4H4-01 1 186045737 186045737 A G HMCN1 Missense_Mutation p.K2823R 0.09 benign(0.003) TCGA-HU-A4H4-01 1 193060808 193060808 C T GLRX2 3'Flank 0.10 TCGA-HU-A4H4-01 1 196227426 196227426 T C KCNT2 Missense_Mutation p.T1037A 0.25 tolerated(0.32) benign(0.011) TCGA-HU-A4H4-01 1 197032148 197032148 A C F13B Missense_Mutation p.I35S 0.04 deleterious(0) probably_damaging(0.976) TCGA-HU-A4H4-01 1 202850209 202850209 T G RABIF Missense_Mutation p.K90T 0.06 deleterious(0) probably_damaging(0.998) TCGA-HU-A4H4-01 1 204945865 204945865 G A NFASC Silent p.T591T 0.19 TCGA-HU-A4H4-01 1 207087391 207087391 A G FAIM3 Missense_Mutation p.L29P 0.14 deleterious(0.03) benign(0.099) TCGA-HU-A4H4-01 1 208315796 208315796 C T PLXNA2 Missense_Mutation p.G462S 0.17 tolerated(0.81) possibly_damaging(0.653) TCGA-HU-A4H4-01 1 210977394 210977394 T C KCNH1 Missense_Mutation p.Y526C 0.10 deleterious(0) possibly_damaging(0.781) TCGA-HU-A4H4-01 1 211846962 211846962 G A NEK2 Missense_Mutation p.R140W 0.11 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H4-01 1 214815439 214815439 T C CENPF Missense_Mutation p.M1253T 0.20 benign(0) TCGA-HU-A4H4-01 1 215345501 215345501 T C KCNK2 Silent p.T266T 0.06 TCGA-HU-A4H4-01 1 216680288 216680288 T C ESRRG Missense_Mutation p.K469R 0.11 deleterious(0.03) probably_damaging(0.972) TCGA-HU-A4H4-01 1 217915421 217915421 A G SPATA17 Missense_Mutation p.Y167C 0.08 deleterious(0) probably_damaging(0.986) TCGA-HU-A4H4-01 1 22079511 22079511 A G USP48 Silent p.L172L 0.26 TCGA-HU-A4H4-01 1 220869994 220869994 T C C1orf115 Missense_Mutation p.V117A 0.08 tolerated(0.06) benign(0.294) TCGA-HU-A4H4-01 1 229676394 229676394 C T ABCB10 Missense_Mutation p.A388T 0.19 deleterious(0.02) benign(0.285) TCGA-HU-A4H4-01 1 230503877 230503877 T C PGBD5 Intron 0.16 TCGA-HU-A4H4-01 1 231700443 231700443 G A TSNAX Missense_Mutation p.R222H 0.12 deleterious(0) probably_damaging(0.923) TCGA-HU-A4H4-01 1 233092116 233092116 G A NTPCR Missense_Mutation p.R74H 0.14 tolerated(0.06) benign(0.017) TCGA-HU-A4H4-01 1 234452411 234452411 A G SLC35F3 Missense_Mutation p.S298G 0.03 tolerated(0.45) benign(0.161) TCGA-HU-A4H4-01 1 234454627 234454627 A G SLC35F3 Missense_Mutation p.Y362C 0.07 deleterious(0.03) possibly_damaging(0.757) TCGA-HU-A4H4-01 1 235976350 235976350 A G LYST Silent p.C68C 0.16 TCGA-HU-A4H4-01 1 238090751 238090751 C T RP11-193H5.1 RNA 0.15 TCGA-HU-A4H4-01 1 241731935 241731935 A G KMO Silent p.Q315Q 0.14 TCGA-HU-A4H4-01 1 241753558 241753558 A - KMO Frame_Shift_Del p.K420Rfs*2 0.19 TCGA-HU-A4H4-01 1 242035442 242035442 T C EXO1 Missense_Mutation p.F459S 0.10 tolerated(0.91) benign(0.002) TCGA-HU-A4H4-01 1 247007222 247007222 T - AHCTF1 Frame_Shift_Del p.I2143* 0.15 TCGA-HU-A4H4-01 1 247050587 247050587 T C AHCTF1 Missense_Mutation p.T809A 0.03 tolerated(0.09) benign(0.138) TCGA-HU-A4H4-01 1 247063505 247063505 A G AHCTF1 Missense_Mutation p.S441P 0.15 deleterious(0) possibly_damaging(0.888) TCGA-HU-A4H4-01 1 247655067 247655067 C A OR2W5 RNA 0.17 TCGA-HU-A4H4-01 1 26608997 26608997 A G UBXN11 Silent p.D452D 0.12 TCGA-HU-A4H4-01 1 27097622 27097622 A - ARID1A Frame_Shift_Del p.K1072Nfs*21 0.16 TCGA-HU-A4H4-01 1 29189495 29189495 T C OPRD1 Silent p.C273C 0.33 TCGA-HU-A4H4-01 1 29447700 29447700 C T TMEM200B Missense_Mutation p.R214H 0.09 deleterious(0.04) benign(0.055) TCGA-HU-A4H4-01 1 31467969 31467969 A G PUM1 Silent p.G273G 0.06 TCGA-HU-A4H4-01 1 31532079 31532079 G C PUM1 Missense_Mutation p.T112S 0.17 deleterious_low_confidence(0) benign(0.001) TCGA-HU-A4H4-01 1 33404024 33404024 T C RNF19B Missense_Mutation p.I573M 0.16 deleterious(0.03) probably_damaging(0.991) TCGA-HU-A4H4-01 1 33990501 33990501 G A CSMD2 Silent p.G3315G 0.17 TCGA-HU-A4H4-01 1 35223145 35223145 T C GJB5 Missense_Mutation p.S72P 0.14 deleterious(0) probably_damaging(0.993) TCGA-HU-A4H4-01 1 35370053 35370053 C T DLGAP3 Missense_Mutation p.R311H 0.17 deleterious(0.01) possibly_damaging(0.474) TCGA-HU-A4H4-01 1 35370418 35370418 C T DLGAP3 Silent p.A189A 0.26 TCGA-HU-A4H4-01 1 3545105 3545105 T C TPRG1L Missense_Mutation p.S253P 0.17 deleterious(0) possibly_damaging(0.757) TCGA-HU-A4H4-01 1 36297173 36297173 G A AGO4 Missense_Mutation p.E332K 0.25 deleterious(0.02) probably_damaging(0.924) TCGA-HU-A4H4-01 1 37947263 37947263 C T ZC3H12A Silent p.R215R 0.07 TCGA-HU-A4H4-01 1 39798016 39798016 C T MACF1 Intron 0.14 TCGA-HU-A4H4-01 1 40030189 40030189 T C PABPC4 Missense_Mutation p.I453M 0.08 tolerated(0.4) benign(0.007) TCGA-HU-A4H4-01 1 43917058 43917058 C T HYI Intron 0.15 TCGA-HU-A4H4-01 1 44466616 44466616 T C SLC6A9 Intron 0.06 TCGA-HU-A4H4-01 1 50956312 50956312 G A FAF1 Missense_Mutation p.A534V 0.15 tolerated(0.38) possibly_damaging(0.718) TCGA-HU-A4H4-01 1 51439924 51439924 A G CDKN2C Silent p.G163G 0.10 TCGA-HU-A4H4-01 1 53930431 53930431 C T DMRTB1 Missense_Mutation p.A291V 0.17 deleterious(0.01) possibly_damaging(0.77) TCGA-HU-A4H4-01 1 6228223 6228223 C T CHD5 Missense_Mutation p.R65Q 0.05 deleterious_low_confidence(0.01) benign(0.238) TCGA-HU-A4H4-01 1 65280486 65280486 G A RAVER2 Missense_Mutation p.C618Y 0.11 tolerated(0.83) benign(0.005) TCGA-HU-A4H4-01 1 65307255 65307255 C T JAK1 Silent p.R811R 0.16 TCGA-HU-A4H4-01 1 6697386 6697386 T C DNAJC11 Missense_Mutation p.N466D 0.13 tolerated(0.28) benign(0.105) TCGA-HU-A4H4-01 1 6714070 6714070 G A DNAJC11 Silent p.T136T 0.10 TCGA-HU-A4H4-01 1 75037669 75037669 T A C1orf173 Missense_Mutation p.E1242V 0.09 deleterious(0) probably_damaging(0.93) TCGA-HU-A4H4-01 1 75097551 75097551 T G C1orf173 Missense_Mutation p.Y222S 0.14 deleterious(0.01) possibly_damaging(0.73) TCGA-HU-A4H4-01 1 8716211 8716211 T - RERE Frame_Shift_Del p.N49Ifs*46 0.13 TCGA-HU-A4H4-01 1 8926353 8926353 G T ENO1 Missense_Mutation p.L218M 0.08 tolerated_low_confidence(0.08) possibly_damaging(0.884) TCGA-HU-A4H4-01 1 90049599 90049599 A G LRRC8B Missense_Mutation p.N464D 0.19 tolerated(0.18) benign(0.142) TCGA-HU-A4H4-01 1 91784745 91784745 G A HFM1 Missense_Mutation p.A901V 0.08 tolerated(0.58) benign(0.005) TCGA-HU-A4H4-01 20 11904330 11904330 A G BTBD3 3'UTR 0.09 TCGA-HU-A4H4-01 20 1352675 1352675 A T FKBP1A Intron 0.17 TCGA-HU-A4H4-01 20 13856754 13856754 A G SEL1L2 Missense_Mutation p.L345S 0.05 tolerated(0.28) possibly_damaging(0.522) TCGA-HU-A4H4-01 20 16360254 16360254 C A KIF16B Missense_Mutation p.R798L 0.07 deleterious(0.02) benign(0.104) TCGA-HU-A4H4-01 20 25187894 25187894 G - ENTPD6 Frame_Shift_Del p.A81Pfs*50 0.08 TCGA-HU-A4H4-01 20 25485646 25485646 T C NINL Missense_Mutation p.T196A 0.15 tolerated(0.08) benign(0.075) TCGA-HU-A4H4-01 20 2841689 2841689 C T VPS16 Missense_Mutation p.A235V 0.07 deleterious(0) probably_damaging(0.992) TCGA-HU-A4H4-01 20 31960473 31960476 AACT - CDK5RAP1 Frame_Shift_Del p.L411Ffs*11 0.08 TCGA-HU-A4H4-01 20 33575629 33575629 T C MYH7B Missense_Mutation p.V485A 0.08 probably_damaging(0.999) TCGA-HU-A4H4-01 20 34078524 34078524 A - CEP250 Frame_Shift_Del p.M885Wfs*5 0.13 TCGA-HU-A4H4-01 20 3653477 3653477 C - ADAM33 Frame_Shift_Del p.G401Afs*68 0.17 TCGA-HU-A4H4-01 20 40118621 40118621 T C CHD6 Missense_Mutation p.T493A 0.08 deleterious(0) probably_damaging(1) TCGA-HU-A4H4-01 20 42635228 42635228 C - TOX2 Frame_Shift_Del p.P71Rfs*2 0.11 TCGA-HU-A4H4-01 20 43034862 43034862 T C HNF4A Missense_Mutation p.Y94H 0.14 deleterious(0) possibly_damaging(0.748) TCGA-HU-A4H4-01 20 43249007 43249007 T G ADA Missense_Mutation p.E337D 0.09 tolerated(0.16) benign(0.005) TCGA-HU-A4H4-01 20 43251662 43251662 C T ADA Missense_Mutation p.E222K 0.11 tolerated(0.51) benign(0.001) TCGA-HU-A4H4-01 20 43726423 43726423 G A KCNS1 Silent p.G330G 0.29 TCGA-HU-A4H4-01 20 44512721 44512721 C A ZSWIM1 3'UTR 0.21 TCGA-HU-A4H4-01 20 47570216 47570216 A G ARFGEF2 Missense_Mutation p.T243A 0.05 tolerated(0.74) benign(0.002) TCGA-HU-A4H4-01 20 50407791 50407791 C T SALL4 Missense_Mutation p.V411M 0.09 tolerated(0.22) benign(0.103) TCGA-HU-A4H4-01 20 51870590 51870590 A G TSHZ2 Missense_Mutation p.Y198C 0.10 deleterious(0) probably_damaging(1) TCGA-HU-A4H4-01 20 51872673 51872673 A T TSHZ2 Silent p.S892S 0.05 TCGA-HU-A4H4-01 20 5294808 5294808 C A PROKR2 Missense_Mutation p.G70C 0.16 deleterious(0) probably_damaging(1) TCGA-HU-A4H4-01 20 53205314 53205314 A C DOK5 Missense_Mutation p.L126F 0.11 deleterious(0.03) probably_damaging(0.98) TCGA-HU-A4H4-01 20 60485530 60485530 C T CDH4 Missense_Mutation p.T414M 0.24 deleterious(0) possibly_damaging(0.882) TCGA-HU-A4H4-01 20 61542343 61542343 T C DIDO1 Missense_Mutation p.T208A 0.11 benign(0.001) TCGA-HU-A4H4-01 20 61588850 61588850 C T SLC17A9 Silent p.A105A 0.08 TCGA-HU-A4H4-01 20 62046342 62046342 A G KCNQ2 Missense_Mutation p.V480A 0.06 tolerated(0.07) possibly_damaging(0.588) TCGA-HU-A4H4-01 20 62559774 62559774 G A DNAJC5 Missense_Mutation p.A26T 0.11 deleterious(0.01) possibly_damaging(0.595) TCGA-HU-A4H4-01 21 11047557 11047557 G A BAGE2 RNA 0.03 TCGA-HU-A4H4-01 21 22910175 22910175 C T NCAM2 Missense_Mutation p.P804L 0.08 tolerated(0.14) benign(0.059) TCGA-HU-A4H4-01 21 27084687 27084687 G A JAM2 Missense_Mutation p.S286N 0.11 tolerated(0.07) benign(0.009) TCGA-HU-A4H4-01 21 30309004 30309004 A G LTN1 Missense_Mutation p.S1546P 0.20 deleterious(0.01) probably_damaging(0.966) TCGA-HU-A4H4-01 21 41033164 41033164 G A B3GALT5 Silent p.A226A 0.27 TCGA-HU-A4H4-01 21 41719765 41719765 A G DSCAM Missense_Mutation p.Y348H 0.10 tolerated(0.19) probably_damaging(0.997) TCGA-HU-A4H4-01 21 44323544 44323544 C A NDUFV3 Missense_Mutation p.A141D 0.18 deleterious(0.01) probably_damaging(0.956) TCGA-HU-A4H4-01 21 46363646 46363646 C - FAM207A Frame_Shift_Del p.S61Afs*11 0.09 TCGA-HU-A4H4-01 21 47848469 47848469 G A PCNT Missense_Mutation p.R2552H 0.25 benign(0.05) TCGA-HU-A4H4-01 21 47961668 47961668 G T DIP2A Splice_Site p.X679_splice 0.12 TCGA-HU-A4H4-01 22 22323108 22323108 T C TOP3B Silent p.L207L 0.13 TCGA-HU-A4H4-01 22 26423589 26423589 C T MYO18B Missense_Mutation p.T2550M 0.26 deleterious_low_confidence(0.03) benign(0.011) TCGA-HU-A4H4-01 22 29886141 29886141 C T NEFH Missense_Mutation p.P838S 0.22 deleterious_low_confidence(0.02) unknown(0) TCGA-HU-A4H4-01 22 30415734 30415734 G A MTMR3 Missense_Mutation p.A696T 0.10 deleterious(0.04) probably_damaging(0.999) TCGA-HU-A4H4-01 22 32007786 32007787 AG - SFI1 Frame_Shift_Del p.R818Tfs*138 0.14 TCGA-HU-A4H4-01 22 36006983 36006983 G A MB Missense_Mutation p.P89L 0.09 deleterious(0.02) probably_damaging(0.975) TCGA-HU-A4H4-01 22 42052906 42052906 G T XRCC6 Splice_Site p.X431_splice 0.09 TCGA-HU-A4H4-01 22 46114329 46114329 G A ATXN10 Silent p.P228P 0.18 TCGA-HU-A4H4-01 22 50718919 50718919 T C PLXNB2 Missense_Mutation p.R1392G 0.16 deleterious(0) possibly_damaging(0.542) TCGA-HU-A4H4-01 2 105858502 105858502 C T GPR45 Missense_Mutation p.P63S 0.10 tolerated(0.12) benign(0.14) TCGA-HU-A4H4-01 2 109383234 109383234 T C RANBP2 Missense_Mutation p.V2080A 0.12 deleterious(0.01) probably_damaging(1) TCGA-HU-A4H4-01 2 11053714 11053714 G A KCNF1 Missense_Mutation p.A388T 0.13 tolerated(0.1) probably_damaging(0.999) TCGA-HU-A4H4-01 2 111423901 111423901 T G BUB1 Missense_Mutation p.K299T 0.21 tolerated(0.15) possibly_damaging(0.632) TCGA-HU-A4H4-01 2 122125256 122125256 T C CLASP1 Missense_Mutation p.N1265S 0.11 tolerated(0.09) benign(0.003) TCGA-HU-A4H4-01 2 136566638 136566638 T G LCT Silent p.I1093I 0.20 TCGA-HU-A4H4-01 2 139316684 139316684 T A SPOPL Silent p.G191G 0.04 TCGA-HU-A4H4-01 2 139428686 139428686 C T NXPH2 Missense_Mutation p.A201T 0.17 tolerated(0.55) benign(0.277) TCGA-HU-A4H4-01 2 141055405 141055405 C T LRP1B Silent p.P4313P 0.14 TCGA-HU-A4H4-01 2 141055459 141055459 A G LRP1B Silent p.N4295N 0.10 TCGA-HU-A4H4-01 2 141232835 141232835 C T LRP1B Missense_Mutation p.S3166N 0.10 benign(0.213) TCGA-HU-A4H4-01 2 141253204 141253204 A C LRP1B Silent p.T2988T 0.09 TCGA-HU-A4H4-01 2 141641534 141641534 T C LRP1B Missense_Mutation p.T1341A 0.15 benign(0.001) TCGA-HU-A4H4-01 2 143798029 143798030 - A KYNU Frame_Shift_Ins p.S361Ifs*15 0.11 TCGA-HU-A4H4-01 2 15760451 15760451 C A DDX1 Missense_Mutation p.H442Q 0.07 deleterious(0.03) probably_damaging(1) TCGA-HU-A4H4-01 2 158114806 158114806 T C GALNT5 Missense_Mutation p.I71T 0.06 tolerated(0.57) benign(0.001) TCGA-HU-A4H4-01 2 165349470 165349470 G A GRB14 3'UTR 0.21 TCGA-HU-A4H4-01 2 166152444 166152444 C A SCN2A Silent p.P37P 0.16 TCGA-HU-A4H4-01 2 167056026 167056026 A G SCN9A Missense_Mutation p.L1697P 0.13 deleterious(0) probably_damaging(1) TCGA-HU-A4H4-01 2 168107435 168107435 G A XIRP2 Missense_Mutation p.R3178H 0.16 benign(0.048) TCGA-HU-A4H4-01 2 179398169 179398170 - G TTN Frame_Shift_Ins p.P34392Tfs*17 0.14 TCGA-HU-A4H4-01 2 179400073 179400073 T G TTN Missense_Mutation p.S33757R 0.15 TCGA-HU-A4H4-01 2 179442835 179442835 A C TTN Missense_Mutation p.F22803V 0.12 TCGA-HU-A4H4-01 2 179466741 179466741 C G TTN Missense_Mutation p.K18419N 0.07 TCGA-HU-A4H4-01 2 179584494 179584494 C A TTN Nonsense_Mutation p.E7909* 0.06 TCGA-HU-A4H4-01 2 179614274 179614274 G A TTN Intron 0.14 TCGA-HU-A4H4-01 2 179616598 179616598 A C TTN Intron 0.14 TCGA-HU-A4H4-01 2 17961984 17961984 A G GEN1 Missense_Mutation p.K502R 0.17 tolerated(0.35) benign(0.115) TCGA-HU-A4H4-01 2 179643977 179643977 C T TTN Missense_Mutation p.M1314I 0.07 TCGA-HU-A4H4-01 2 180634495 180634495 A T ZNF385B 5'UTR 0.17 TCGA-HU-A4H4-01 2 183790381 183790381 A - NCKAP1 3'UTR 0.18 TCGA-HU-A4H4-01 2 183792922 183792922 C T NCKAP1 Missense_Mutation p.A1041T 0.07 deleterious(0) possibly_damaging(0.456) TCGA-HU-A4H4-01 2 1893203 1893203 A G MYT1L Missense_Mutation p.M775T 0.06 deleterious(0.01) benign(0.173) TCGA-HU-A4H4-01 2 189406013 189406013 C T GULP1 Missense_Mutation p.H123Y 0.16 deleterious(0) possibly_damaging(0.904) TCGA-HU-A4H4-01 2 191353530 191353530 T C MFSD6 Missense_Mutation p.L593S 0.11 deleterious(0) possibly_damaging(0.865) TCGA-HU-A4H4-01 2 192818505 192818505 C T TMEFF2 Missense_Mutation p.V310I 0.12 deleterious(0) probably_damaging(0.969) TCGA-HU-A4H4-01 2 196837116 196837116 G A DNAH7 Silent p.L636L 0.13 TCGA-HU-A4H4-01 2 197763087 197763087 C T PGAP1 Missense_Mutation p.A272T 0.12 deleterious(0) possibly_damaging(0.895) TCGA-HU-A4H4-01 2 201436992 201436992 A - SGOL2 Frame_Shift_Del p.G644Vfs*18 0.15 TCGA-HU-A4H4-01 2 201785740 201785740 T C ORC2 Missense_Mutation p.I424V 0.07 tolerated(0.07) benign(0.077) TCGA-HU-A4H4-01 2 20196998 20196998 G T MATN3 Silent p.G397G 0.17 TCGA-HU-A4H4-01 2 20511377 20511377 T - PUM2 Frame_Shift_Del p.G133Afs*24 0.22 TCGA-HU-A4H4-01 2 209302278 209302278 T C PTH2R Silent p.P65P 0.06 TCGA-HU-A4H4-01 2 210557835 210557836 - A MAP2 Frame_Shift_Ins p.S315Kfs*18 0.15 TCGA-HU-A4H4-01 2 219617886 219617886 T C TTLL4 Missense_Mutation p.V1079A 0.11 tolerated(1) benign(0.002) TCGA-HU-A4H4-01 2 220337027 220337027 C T SPEG Missense_Mutation p.P1305L 0.14 benign(0.06) TCGA-HU-A4H4-01 2 226446682 226446682 C T NYAP2 Silent p.S183S 0.12 TCGA-HU-A4H4-01 2 228169767 228169767 A - COL4A3 Frame_Shift_Del p.G1409Afs*20 0.25 TCGA-HU-A4H4-01 2 229890417 229890417 G A PID1 Silent p.S226S 0.42 TCGA-HU-A4H4-01 2 230679822 230679823 AA - TRIP12 Frame_Shift_Del p.L527Rfs*10 0.08 TCGA-HU-A4H4-01 2 237285818 237285818 A G IQCA1 Missense_Mutation p.S497P 0.05 deleterious(0) probably_damaging(0.979) TCGA-HU-A4H4-01 2 238289663 238289663 C T COL6A3 Missense_Mutation p.D598N 0.11 probably_damaging(0.982) TCGA-HU-A4H4-01 2 242194542 242194542 G A HDLBP Missense_Mutation p.A371V 0.15 tolerated(0.1) possibly_damaging(0.823) TCGA-HU-A4H4-01 2 242741350 242741350 C A GAL3ST2 Missense_Mutation p.L92M 0.20 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H4-01 2 26672938 26672938 G T DRC1 Silent p.L528L 0.15 TCGA-HU-A4H4-01 2 27373194 27373194 G A TCF23 Silent p.P142P 0.10 TCGA-HU-A4H4-01 2 27535602 27535602 C T MPV17 Missense_Mutation p.R75Q 0.18 tolerated(0.14) benign(0.05) TCGA-HU-A4H4-01 2 27681051 27681051 G A IFT172 Silent p.L973L 0.14 TCGA-HU-A4H4-01 2 27684212 27684212 C T IFT172 Missense_Mutation p.R789Q 0.09 tolerated(0.63) benign(0.005) TCGA-HU-A4H4-01 2 29240782 29240782 C T FAM179A Silent p.P440P 0.21 TCGA-HU-A4H4-01 2 29404451 29404451 T C CLIP4 Silent p.L604L 0.11 TCGA-HU-A4H4-01 2 32339883 32339883 A G SPAST Missense_Mutation p.T287A 0.09 tolerated(0.64) benign(0.001) TCGA-HU-A4H4-01 2 32515676 32515676 T C YIPF4 Silent p.D68D 0.22 TCGA-HU-A4H4-01 2 32668623 32668623 A G BIRC6 Missense_Mutation p.N1435D 0.21 probably_damaging(0.98) TCGA-HU-A4H4-01 2 37088308 37088308 T A STRN Missense_Mutation p.T546S 0.11 deleterious(0.02) benign(0.044) TCGA-HU-A4H4-01 2 37126678 37126678 A G STRN Silent p.I261I 0.11 TCGA-HU-A4H4-01 2 37441037 37441037 C T CEBPZ Missense_Mutation p.V839M 0.12 deleterious(0) probably_damaging(0.962) TCGA-HU-A4H4-01 2 37454737 37454737 T C CEBPZ Silent p.V533V 0.14 TCGA-HU-A4H4-01 2 37513366 37513366 G A PRKD3 Silent p.C288C 0.13 TCGA-HU-A4H4-01 2 44586851 44586851 G A PREPL Nonsense_Mutation p.Q2* 0.11 TCGA-HU-A4H4-01 2 51253569 51253569 A C NRXN1 Missense_Mutation p.L271V 0.30 tolerated_low_confidence(0.69) benign(0.005) TCGA-HU-A4H4-01 2 53992602 53992602 G C ASB3 Silent p.V71V 0.12 TCGA-HU-A4H4-01 2 60688122 60688122 A G BCL11A Missense_Mutation p.F642S 0.08 tolerated(0.18) benign(0.005) TCGA-HU-A4H4-01 2 61310316 61310316 A - KIAA1841 Frame_Shift_Del p.N254Ifs*2 0.12 TCGA-HU-A4H4-01 2 61571086 61571087 - T USP34 Frame_Shift_Ins p.N788Kfs*4 0.16 TCGA-HU-A4H4-01 2 62450292 62450292 G A B3GNT2 Missense_Mutation p.G313S 0.12 tolerated(0.07) probably_damaging(0.972) TCGA-HU-A4H4-01 2 63091876 63091876 T C EHBP1 Silent p.T291T 0.21 TCGA-HU-A4H4-01 2 71185198 71185198 T C ATP6V1B1 Missense_Mutation p.V66A 0.23 deleterious(0.03) probably_damaging(0.981) TCGA-HU-A4H4-01 2 72371240 72371240 G A CYP26B1 Missense_Mutation p.R103C 0.16 deleterious(0.02) benign(0.178) TCGA-HU-A4H4-01 2 73777450 73777450 G A ALMS1 Missense_Mutation p.D3321N 0.06 probably_damaging(1) TCGA-HU-A4H4-01 2 74274090 74274090 A - TET3 Frame_Shift_Del p.N216Tfs*190 0.10 TCGA-HU-A4H4-01 2 75100464 75100464 T C HK2 Missense_Mutation p.V186A 0.10 deleterious(0.01) benign(0.432) TCGA-HU-A4H4-01 2 75112659 75112659 T G HK2 Silent p.S626S 0.15 TCGA-HU-A4H4-01 2 85848665 85848665 T C USP39 Silent p.N132N 0.21 TCGA-HU-A4H4-01 2 9437519 9437519 C T ASAP2 Missense_Mutation p.A97V 0.10 deleterious(0) possibly_damaging(0.895) TCGA-HU-A4H4-01 2 96798424 96798424 C A ASTL Missense_Mutation p.Q164H 0.08 deleterious(0.01) probably_damaging(0.995) TCGA-HU-A4H4-01 2 98340736 98340736 A G ZAP70 Silent p.G79G 0.20 TCGA-HU-A4H4-01 3 101475941 101475941 A G CEP97 Missense_Mutation p.N310D 0.21 tolerated(0.07) benign(0.008) TCGA-HU-A4H4-01 3 101574022 101574022 T C NFKBIZ Silent p.C520C 0.22 TCGA-HU-A4H4-01 3 108229398 108229398 A - MYH15 Frame_Shift_Del p.W14Gfs*5 0.24 TCGA-HU-A4H4-01 3 108363596 108363596 T C DZIP3 Missense_Mutation p.I576T 0.10 tolerated_low_confidence(0.21) probably_damaging(0.996) TCGA-HU-A4H4-01 3 138669430 138669430 T G C3orf72 3'UTR 0.04 TCGA-HU-A4H4-01 3 138724615 138724615 C G PRR23A Missense_Mutation p.E166Q 0.39 tolerated(0.5) possibly_damaging(0.778) TCGA-HU-A4H4-01 3 138724709 138724709 G A PRR23A Silent p.D134D 0.15 TCGA-HU-A4H4-01 3 140122478 140122478 C T CLSTN2 Silent p.I80I 0.14 TCGA-HU-A4H4-01 3 141164211 141164211 G A ZBTB38 Missense_Mutation p.G994E 0.28 tolerated(0.91) benign(0.206) TCGA-HU-A4H4-01 3 14174093 14174093 A G TMEM43 Missense_Mutation p.Y147C 0.11 deleterious(0) probably_damaging(1) TCGA-HU-A4H4-01 3 150400040 150400040 A - FAM194A Frame_Shift_Del p.S283Lfs*22 0.12 TCGA-HU-A4H4-01 3 151083753 151083753 T G MED12L Missense_Mutation p.F1066V 0.43 deleterious(0) possibly_damaging(0.85) TCGA-HU-A4H4-01 3 154147110 154147110 C G GPR149 Missense_Mutation p.G99R 0.09 tolerated(0.14) possibly_damaging(0.813) TCGA-HU-A4H4-01 3 156009837 156009837 G A KCNAB1 Intron 0.07 TCGA-HU-A4H4-01 3 164059186 164059186 G T MIR720 RNA 0.31 TCGA-HU-A4H4-01 3 164755788 164755788 G A SI Nonsense_Mutation p.Q776* 0.08 TCGA-HU-A4H4-01 3 167277983 167277983 A G WDR49 Missense_Mutation p.F174L 0.22 tolerated(0.08) possibly_damaging(0.503) TCGA-HU-A4H4-01 3 167507159 167507159 A - SERPINI1 Frame_Shift_Del p.N83Mfs*8 0.18 TCGA-HU-A4H4-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.21 tolerated(0.11) possibly_damaging(0.529) TCGA-HU-A4H4-01 3 179069813 179069813 T - MFN1 Frame_Shift_Del p.F81Lfs*28 0.09 TCGA-HU-A4H4-01 3 183245660 183245660 C A KLHL6 Silent p.R144R 0.09 TCGA-HU-A4H4-01 3 183643441 183643441 T C ABCC5 Missense_Mutation p.I1372V 0.06 tolerated(0.1) benign(0.02) TCGA-HU-A4H4-01 3 183860111 183860111 C T EIF2B5 Silent p.G463G 0.10 TCGA-HU-A4H4-01 3 183885371 183885371 T C DVL3 Missense_Mutation p.L401P 0.11 deleterious(0.01) benign(0.37) TCGA-HU-A4H4-01 3 184009927 184009927 C T ECE2 Silent p.R851R 0.20 TCGA-HU-A4H4-01 3 192516279 192516280 - T MB21D2 Frame_Shift_Ins p.L458Tfs*7 0.16 TCGA-HU-A4H4-01 3 193343943 193343943 C T OPA1 Silent p.R229R 0.06 TCGA-HU-A4H4-01 3 194158139 194158139 G A ATP13A3 Missense_Mutation p.R634C 0.18 deleterious(0) possibly_damaging(0.847) TCGA-HU-A4H4-01 3 194790641 194790641 C T XXYLT1 Missense_Mutation p.G329R 0.14 deleterious(0) probably_damaging(1) TCGA-HU-A4H4-01 3 195474070 195474070 T C MUC4 Missense_Mutation p.N5406D 0.05 benign(0.001) TCGA-HU-A4H4-01 3 195701416 195701416 G A SDHAP1 RNA 0.13 TCGA-HU-A4H4-01 3 19930097 19930097 T C EFHB Missense_Mutation p.D591G 0.18 tolerated(0.33) benign(0.044) TCGA-HU-A4H4-01 3 24006563 24006563 A C NR1D2 Missense_Mutation p.K414N 0.08 deleterious(0) probably_damaging(0.997) TCGA-HU-A4H4-01 3 25686929 25686929 T - TOP2B Frame_Shift_Del p.E30Kfs*44 0.22 TCGA-HU-A4H4-01 3 32031859 32031859 A G ZNF860 Missense_Mutation p.K430E 0.17 tolerated(1) benign(0) TCGA-HU-A4H4-01 3 32032011 32032011 A C ZNF860 Missense_Mutation p.K480N 0.08 deleterious(0.01) possibly_damaging(0.855) TCGA-HU-A4H4-01 3 36887887 36887887 G A TRANK1 Silent p.N1637N 0.07 TCGA-HU-A4H4-01 3 38739912 38739912 A T SCN10A Missense_Mutation p.L1600H 0.15 deleterious(0) probably_damaging(0.994) TCGA-HU-A4H4-01 3 38889155 38889155 C T SCN11A Missense_Mutation p.R1469Q 0.12 deleterious(0.01) benign(0.405) TCGA-HU-A4H4-01 3 44598809 44598809 G T ZKSCAN7 Missense_Mutation p.K90N 0.21 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H4-01 3 46491433 46491433 G A LTF Missense_Mutation p.A323V 0.09 deleterious(0.03) benign(0.224) TCGA-HU-A4H4-01 3 47619224 47619224 T C CSPG5 Missense_Mutation p.T98A 0.07 tolerated_low_confidence(0.44) benign(0.007) TCGA-HU-A4H4-01 3 47890542 47890542 T C DHX30 Missense_Mutation p.Y968H 0.11 tolerated(0.22) benign(0.03) TCGA-HU-A4H4-01 3 50005505 50005505 G A RBM6 Missense_Mutation p.R216K 0.13 tolerated(0.06) probably_damaging(0.992) TCGA-HU-A4H4-01 3 52682399 52682400 - T PBRM1 Frame_Shift_Ins p.N258Kfs*6 0.17 TCGA-HU-A4H4-01 3 53289886 53289886 T C TKT Missense_Mutation p.S25G 0.24 tolerated(0.16) benign(0.002) TCGA-HU-A4H4-01 3 69077408 69077408 A G TMF1 Missense_Mutation p.V878A 0.08 tolerated(0.86) benign(0) TCGA-HU-A4H4-01 3 73433995 73433995 G A PDZRN3 Silent p.T574T 0.11 TCGA-HU-A4H4-01 3 78663796 78663796 A G ROBO1 Splice_Site p.X1479_splice 0.17 TCGA-HU-A4H4-01 3 89445043 89445043 T G EPHA3 Missense_Mutation p.L455V 0.15 deleterious(0.04) probably_damaging(0.996) TCGA-HU-A4H4-01 3 9000630 9000630 A G RAD18 Missense_Mutation p.M36T 0.04 deleterious(0) possibly_damaging(0.772) TCGA-HU-A4H4-01 3 97367214 97367214 C T EPHA6 Intron 0.22 TCGA-HU-A4H4-01 3 98110108 98110108 T G OR5K3 Missense_Mutation p.F200C 0.11 deleterious(0.01) benign(0.072) TCGA-HU-A4H4-01 4 100460468 100460468 A C C4orf17 Silent p.P259P 0.31 TCGA-HU-A4H4-01 4 101961640 101961640 T A PPP3CA Nonsense_Mutation p.R414* 0.16 TCGA-HU-A4H4-01 4 108985525 108985527 TCT - LEF1 In_Frame_Del p.K377del 0.15 TCGA-HU-A4H4-01 4 113524722 113524722 T C C4orf21 Silent p.T978T 0.12 TCGA-HU-A4H4-01 4 115773957 115773957 T C NDST4 Silent p.R580R 0.09 TCGA-HU-A4H4-01 4 123283396 123283396 A G KIAA1109 Silent p.E5004E 0.07 TCGA-HU-A4H4-01 4 123342544 123342544 A C ADAD1 Missense_Mutation p.K539T 0.24 deleterious(0) probably_damaging(1) TCGA-HU-A4H4-01 4 123814250 123814250 G A NUDT6 Silent p.R228R 0.06 TCGA-HU-A4H4-01 4 125590260 125590260 T C ANKRD50 Missense_Mutation p.Q1391R 0.06 tolerated_low_confidence(0.49) benign(0.077) TCGA-HU-A4H4-01 4 145640026 145640026 G T HHIP Splice_Site p.X560_splice 0.07 TCGA-HU-A4H4-01 4 146025624 146025624 A G ABCE1 Silent p.K20K 0.20 TCGA-HU-A4H4-01 4 146059009 146059010 TC - OTUD4 Frame_Shift_Del p.E908Nfs*5 0.10 TCGA-HU-A4H4-01 4 153897212 153897212 A G FHDC1 Silent p.S923S 0.13 TCGA-HU-A4H4-01 4 156618035 156618035 C T GUCY1A3 Missense_Mutation p.L6F 0.10 deleterious_low_confidence(0.03) benign(0.079) TCGA-HU-A4H4-01 4 160273979 160273979 T C RAPGEF2 Silent p.H1175H 0.10 TCGA-HU-A4H4-01 4 170028302 170028302 G A SH3RF1 Missense_Mutation p.P732S 0.09 tolerated(1) benign(0.044) TCGA-HU-A4H4-01 4 178283481 178283481 G A NEIL3 Silent p.K558K 0.15 TCGA-HU-A4H4-01 4 187454870 187454870 A G MTNR1A Silent p.N342N 0.25 TCGA-HU-A4H4-01 4 1985010 1985010 C T NELFA 3'UTR 0.06 TCGA-HU-A4H4-01 4 20525651 20525651 A C SLIT2 Missense_Mutation p.N430T 0.18 deleterious(0) probably_damaging(0.995) TCGA-HU-A4H4-01 4 20568977 20568977 T G SLIT2 Missense_Mutation p.F940V 0.16 tolerated(0.6) benign(0.257) TCGA-HU-A4H4-01 4 20714416 20714417 GA - PACRGL Frame_Shift_Del p.E126Dfs*2 0.09 TCGA-HU-A4H4-01 4 30725990 30725990 C T PCDH7 Silent p.S982S 0.25 TCGA-HU-A4H4-01 4 3494970 3494970 C - DOK7 Frame_Shift_Del p.S422Hfs*34 0.19 TCGA-HU-A4H4-01 4 70160477 70160477 T G UGT2B28 Missense_Mutation p.F514V 0.07 deleterious(0) possibly_damaging(0.861) TCGA-HU-A4H4-01 4 71701916 71701916 G T GRSF1 Missense_Mutation p.P158H 0.15 deleterious(0) probably_damaging(0.994) TCGA-HU-A4H4-01 4 79429907 79429907 A C FRAS1 Missense_Mutation p.D3176A 0.10 possibly_damaging(0.881) TCGA-HU-A4H4-01 4 85654581 85654581 T C WDFY3 Missense_Mutation p.N2392S 0.13 tolerated(0.44) benign(0) TCGA-HU-A4H4-01 4 85707266 85707266 C A WDFY3 Missense_Mutation p.V1310L 0.15 tolerated(0.71) benign(0.001) TCGA-HU-A4H4-01 4 87735668 87735668 A G PTPN13 Silent p.E2479E 0.18 TCGA-HU-A4H4-01 4 94690430 94690430 G A GRID2 Silent p.Q810Q 0.35 TCGA-HU-A4H4-01 4 95506806 95506806 T C PDLIM5 Silent p.D164D 0.08 TCGA-HU-A4H4-01 5 101834355 101834355 C T SLCO6A1 Missense_Mutation p.R65Q 0.35 tolerated(0.69) benign(0.011) TCGA-HU-A4H4-01 5 110409177 110409178 - T TSLP Intron 0.12 TCGA-HU-A4H4-01 5 110436294 110436294 A G WDR36 Missense_Mutation p.Y195C 0.27 deleterious(0.01) probably_damaging(0.996) TCGA-HU-A4H4-01 5 110438041 110438041 T C WDR36 Intron 0.16 TCGA-HU-A4H4-01 5 112174057 112174057 T C APC Silent p.L922L 0.22 TCGA-HU-A4H4-01 5 126993191 126993191 C A CTXN3 5'UTR 0.10 TCGA-HU-A4H4-01 5 139574218 139574218 G T CYSTM1 Missense_Mutation p.Q56H 0.09 tolerated_low_confidence(0.08) unknown(0) TCGA-HU-A4H4-01 5 140229950 140229950 G A PCDHA9 Missense_Mutation p.V624M 0.08 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-HU-A4H4-01 5 140249772 140249772 G A PCDHA11 Missense_Mutation p.A362T 0.07 tolerated_low_confidence(0.1) benign(0.173) TCGA-HU-A4H4-01 5 140308912 140308912 T C PCDHAC1 Splice_Site p.X811_splice 0.04 TCGA-HU-A4H4-01 5 140516810 140516810 C T PCDHB5 Silent p.N598N 0.14 TCGA-HU-A4H4-01 5 140552971 140552971 C T PCDHB7 Silent p.S185S 0.12 TCGA-HU-A4H4-01 5 140580496 140580496 T C PCDHB11 Silent p.C383C 0.09 TCGA-HU-A4H4-01 5 140741590 140741590 C T PCDHGB2 Missense_Mutation p.R630C 0.09 deleterious(0.01) possibly_damaging(0.563) TCGA-HU-A4H4-01 5 140794641 140794641 G A PCDHGA10 Silent p.A633A 0.34 TCGA-HU-A4H4-01 5 141318154 141318154 A G KIAA0141 Missense_Mutation p.N460D 0.10 tolerated(0.3) possibly_damaging(0.556) TCGA-HU-A4H4-01 5 145664188 145664188 G A RBM27 Missense_Mutation p.A998T 0.38 tolerated(0.07) benign(0.007) TCGA-HU-A4H4-01 5 145895470 145895470 C T GPR151 Silent p.K69K 0.37 TCGA-HU-A4H4-01 5 147016541 147016541 G T JAKMIP2 Missense_Mutation p.A534D 0.49 deleterious(0.01) benign(0.22) TCGA-HU-A4H4-01 5 149457796 149457796 G - CSF1R Frame_Shift_Del p.P203Qfs*3 0.23 TCGA-HU-A4H4-01 5 149506146 149506146 G T PDGFRB Silent p.A537A 0.06 TCGA-HU-A4H4-01 5 150436498 150436498 A G TNIP1 Silent p.R152R 0.26 TCGA-HU-A4H4-01 5 150844683 150844683 A G SLC36A1 Silent p.L124L 0.07 TCGA-HU-A4H4-01 5 157166483 157166483 A G THG1L Missense_Mutation p.D297G 0.32 deleterious_low_confidence(0.01) benign(0.309) TCGA-HU-A4H4-01 5 168244441 168244441 G T SLIT3 Nonsense_Mutation p.C219* 0.12 TCGA-HU-A4H4-01 5 169533358 169533358 G A FOXI1 Missense_Mutation p.A133T 0.15 deleterious(0) probably_damaging(1) TCGA-HU-A4H4-01 5 175777642 175777642 A C KIAA1191 Missense_Mutation p.Y145D 0.08 deleterious(0.04) possibly_damaging(0.89) TCGA-HU-A4H4-01 5 176827261 176827261 G A PFN3 Missense_Mutation p.A106V 0.26 tolerated(0.54) benign(0.025) TCGA-HU-A4H4-01 5 180039544 180039544 C A FLT4 Nonsense_Mutation p.E1167* 0.11 TCGA-HU-A4H4-01 5 19503152 19503152 G A CDH18 Missense_Mutation p.L527F 0.15 deleterious(0.03) benign(0.037) TCGA-HU-A4H4-01 5 2749639 2749639 C T IRX2 Missense_Mutation p.R171H 0.18 deleterious(0) probably_damaging(0.997) TCGA-HU-A4H4-01 5 33938167 33938167 C T RXFP3 Missense_Mutation p.A441V 0.21 tolerated(0.22) benign(0.003) TCGA-HU-A4H4-01 5 34823297 34823298 AG - RAI14 Frame_Shift_Del p.R455Kfs*21 0.14 TCGA-HU-A4H4-01 5 35641676 35641676 T G SPEF2 Missense_Mutation p.I102S 0.08 deleterious(0) benign(0.342) TCGA-HU-A4H4-01 5 37516665 37516665 G A WDR70 Missense_Mutation p.G297E 0.10 tolerated(1) benign(0) TCGA-HU-A4H4-01 5 40853351 40853351 A G CARD6 Silent p.R639R 0.15 TCGA-HU-A4H4-01 5 68660634 68660634 T C TAF9 3'UTR 0.12 TCGA-HU-A4H4-01 5 80388671 80388671 G A RASGRF2 Missense_Mutation p.R481H 0.17 deleterious(0) probably_damaging(0.96) TCGA-HU-A4H4-01 5 9108296 9108296 G A SEMA5A Missense_Mutation p.R677C 0.10 deleterious(0) possibly_damaging(0.876) TCGA-HU-A4H4-01 5 94749808 94749808 A G FAM81B Missense_Mutation p.K151E 0.08 tolerated(0.23) possibly_damaging(0.701) TCGA-HU-A4H4-01 6 100838312 100838312 A C SIM1 Silent p.T742T 0.19 TCGA-HU-A4H4-01 6 10874777 10874777 A G GCM2 Silent p.F324F 0.19 TCGA-HU-A4H4-01 6 11191400 11191400 T C NEDD9 Silent p.A234A 0.09 TCGA-HU-A4H4-01 6 11213531 11213531 G A NEDD9 Missense_Mutation p.P148S 0.07 tolerated(0.13) benign(0.005) TCGA-HU-A4H4-01 6 118791725 118791726 TG - CEP85L Frame_Shift_Del p.Q669Efs*8 0.08 TCGA-HU-A4H4-01 6 12121228 12121228 A - HIVEP1 Frame_Shift_Del p.K402Nfs*21 0.08 TCGA-HU-A4H4-01 6 12122666 12122666 G A HIVEP1 Missense_Mutation p.V880I 0.10 tolerated(0.12) benign(0.053) TCGA-HU-A4H4-01 6 121452898 121452898 T A TBC1D32 Missense_Mutation p.D925V 0.31 deleterious(0.01) benign(0.046) TCGA-HU-A4H4-01 6 12164142 12164142 C T HIVEP1 Silent p.P2535P 0.13 TCGA-HU-A4H4-01 6 12164656 12164656 A G HIVEP1 Missense_Mutation p.S2707G 0.10 deleterious(0) probably_damaging(0.997) TCGA-HU-A4H4-01 6 122768310 122768310 T C SERINC1 Silent p.G317G 0.14 TCGA-HU-A4H4-01 6 126199499 126199499 A G NCOA7 Missense_Mutation p.T148A 0.15 tolerated(0.65) probably_damaging(0.999) TCGA-HU-A4H4-01 6 134583019 134583019 A - SGK1 Intron 0.17 TCGA-HU-A4H4-01 6 135360709 135360709 A G HBS1L Splice_Site p.X144_splice 0.08 TCGA-HU-A4H4-01 6 135560314 135560314 T A MIR548A2 RNA 0.10 TCGA-HU-A4H4-01 6 143091156 143091156 T C HIVEP2 Missense_Mutation p.T1574A 0.11 tolerated(0.52) benign(0.009) TCGA-HU-A4H4-01 6 145115062 145115062 C A UTRN Missense_Mutation p.L3005I 0.12 deleterious(0) possibly_damaging(0.824) TCGA-HU-A4H4-01 6 149777879 149777879 C A ZC3H12D Silent p.R201R 0.15 TCGA-HU-A4H4-01 6 152686081 152686081 T G SYNE1 Missense_Mutation p.Q3349P 0.19 possibly_damaging(0.732) TCGA-HU-A4H4-01 6 160207001 160207001 T - TCP1 Frame_Shift_Del p.N103Mfs*5 0.13 TCGA-HU-A4H4-01 6 163986984 163986984 C A QKI Intron 0.11 TCGA-HU-A4H4-01 6 168325765 168325765 A G MLLT4 Silent p.A1024A 0.10 TCGA-HU-A4H4-01 6 17800233 17800233 C T KIF13A Missense_Mutation p.V856I 0.03 tolerated(0.52) benign(0.002) TCGA-HU-A4H4-01 6 20212446 20212446 G A MBOAT1 Missense_Mutation p.P7L 0.09 deleterious_low_confidence(0.01) benign(0.001) TCGA-HU-A4H4-01 6 20490686 20490686 A - E2F3 3'UTR 0.11 TCGA-HU-A4H4-01 6 25689706 25689706 T C SCGN Silent p.C193C 0.08 TCGA-HU-A4H4-01 6 26411795 26411795 C T BTN3A1 Missense_Mutation p.A335V 0.17 tolerated(0.05) probably_damaging(0.972) TCGA-HU-A4H4-01 6 27100511 27100511 A T HIST1H2BJ Missense_Mutation p.S7T 0.07 deleterious_low_confidence(0.03) unknown(0) TCGA-HU-A4H4-01 6 27420527 27420527 T A ZNF184 Missense_Mutation p.I271F 0.14 deleterious(0) probably_damaging(0.984) TCGA-HU-A4H4-01 6 28227462 28227462 C T NKAPL Missense_Mutation p.R105W 0.16 tolerated(0.18) unknown(0) TCGA-HU-A4H4-01 6 29430469 29430469 A G OR2H1 Missense_Mutation p.D308G 0.05 tolerated(0.26) benign(0) TCGA-HU-A4H4-01 6 31644790 31644790 A G LY6G5C Missense_Mutation p.Y133H 0.09 deleterious(0.03) benign(0.005) TCGA-HU-A4H4-01 6 31749699 31749699 G A VARS Missense_Mutation p.R758C 0.05 deleterious(0) possibly_damaging(0.836) TCGA-HU-A4H4-01 6 32046817 32046817 G A RNA5SP206 5'Flank 0.15 TCGA-HU-A4H4-01 6 32159673 32159673 C T GPSM3 Missense_Mutation p.R53H 0.11 tolerated_low_confidence(0.55) benign(0.375) TCGA-HU-A4H4-01 6 32184962 32184962 T C NOTCH4 Missense_Mutation p.Q569R 0.10 tolerated(0.62) benign(0.2) TCGA-HU-A4H4-01 6 32410459 32410459 C T HLA-DRA Missense_Mutation p.P106L 0.11 tolerated(0.09) benign(0.109) TCGA-HU-A4H4-01 6 33289197 33289197 G A DAXX Missense_Mutation p.R119W 0.06 deleterious(0) probably_damaging(0.97) TCGA-HU-A4H4-01 6 34004301 34004301 C T GRM4 Missense_Mutation p.R529Q 0.30 tolerated(0.07) probably_damaging(0.999) TCGA-HU-A4H4-01 6 35048916 35048916 C T ANKS1A Missense_Mutation p.A897V 0.13 tolerated(0.58) benign(0.001) TCGA-HU-A4H4-01 6 35443724 35443724 G - TEAD3 Frame_Shift_Del p.P291Lfs*37 0.14 TCGA-HU-A4H4-01 6 35782436 35782436 C T LHFPL5 Missense_Mutation p.R176C 0.11 deleterious(0) probably_damaging(1) TCGA-HU-A4H4-01 6 35806549 35806549 T A SRPK1 Intron 0.10 TCGA-HU-A4H4-01 6 38998037 38998037 T C DNAH8 Missense_Mutation p.Y4448H 0.12 possibly_damaging(0.656) TCGA-HU-A4H4-01 6 42937706 42937707 - A PEX6 Frame_Shift_Ins p.K384* 0.16 TCGA-HU-A4H4-01 6 42986861 42986861 T G KLHDC3 Missense_Mutation p.F321V 0.04 tolerated(0.59) benign(0.015) TCGA-HU-A4H4-01 6 43020479 43020479 G A CUL7 Silent p.P68P 0.08 TCGA-HU-A4H4-01 6 43098289 43098289 G A PTK7 Silent p.V242V 0.14 TCGA-HU-A4H4-01 6 46777201 46777201 C T MEP1A Missense_Mutation p.R103C 0.40 deleterious(0) probably_damaging(0.997) TCGA-HU-A4H4-01 6 47649925 47649925 C A GPR111 Missense_Mutation p.L544I 0.10 tolerated(0.2) probably_damaging(0.999) TCGA-HU-A4H4-01 6 52268177 52268177 C T PAQR8 Missense_Mutation p.R56C 0.09 deleterious(0) probably_damaging(1) TCGA-HU-A4H4-01 6 52343854 52343854 A G EFHC1 Missense_Mutation p.D433G 0.17 deleterious(0) probably_damaging(0.984) TCGA-HU-A4H4-01 6 52957292 52957292 C T FBXO9 Missense_Mutation p.P250L 0.39 deleterious(0.02) benign(0.167) TCGA-HU-A4H4-01 6 56469397 56469397 C A DST Intron 0.10 TCGA-HU-A4H4-01 6 64404538 64404538 C T PHF3 Missense_Mutation p.P855L 0.10 tolerated(0.08) probably_damaging(0.995) TCGA-HU-A4H4-01 6 70942385 70942386 - G COL9A1 Frame_Shift_Ins p.G802Rfs*21 0.20 TCGA-HU-A4H4-01 6 83848666 83848666 A G DOPEY1 Silent p.T1635T 0.08 TCGA-HU-A4H4-01 6 83848693 83848693 G A DOPEY1 Silent p.V1644V 0.12 TCGA-HU-A4H4-01 6 88125515 88125515 G A C6ORF165 Missense_Mutation p.R132Q 0.12 tolerated(0.23) benign(0.041) TCGA-HU-A4H4-01 6 94120211 94120211 T G EPHA7 Intron 0.09 TCGA-HU-A4H4-01 7 107545454 107545454 C A DLD Missense_Mutation p.A130E 0.12 deleterious(0) probably_damaging(0.997) TCGA-HU-A4H4-01 7 107832191 107832191 C T NRCAM Missense_Mutation p.A629T 0.12 deleterious(0.01) probably_damaging(1) TCGA-HU-A4H4-01 7 128588914 128588914 G A IRF5 3'Flank 0.12 TCGA-HU-A4H4-01 7 129832581 129832581 T C TMEM209 Missense_Mutation p.Y219C 0.06 deleterious(0.02) possibly_damaging(0.779) TCGA-HU-A4H4-01 7 133622681 133622681 A G EXOC4 Missense_Mutation p.N689D 0.13 deleterious(0.01) probably_damaging(0.958) TCGA-HU-A4H4-01 7 138968847 138968847 T A UBN2 Missense_Mutation p.S1066T 0.07 tolerated_low_confidence(0.38) benign(0.172) TCGA-HU-A4H4-01 7 148863337 148863337 A G ZNF398 Missense_Mutation p.N170D 0.08 deleterious(0.01) possibly_damaging(0.676) TCGA-HU-A4H4-01 7 150746007 150746007 G A ASIC3 Missense_Mutation p.R12Q 0.13 tolerated(0.22) benign(0.007) TCGA-HU-A4H4-01 7 150935383 150935383 C - CHPF2 Frame_Shift_Del p.S648Pfs*13 0.19 TCGA-HU-A4H4-01 7 157985105 157985105 G T PTPRN2 Missense_Mutation p.L155M 0.20 deleterious(0) probably_damaging(0.998) TCGA-HU-A4H4-01 7 17373617 17373617 T C AHR Silent p.L263L 0.11 TCGA-HU-A4H4-01 7 2412376 2412376 C T EIF3B Missense_Mutation p.R586W 0.12 deleterious(0) probably_damaging(1) TCGA-HU-A4H4-01 7 36455394 36455394 A - ANLN Frame_Shift_Del p.K476Nfs*13 0.11 TCGA-HU-A4H4-01 7 39247128 39247128 A G POU6F2 Silent p.T140T 0.11 TCGA-HU-A4H4-01 7 39472723 39472723 A C POU6F2 Missense_Mutation p.Q358H 0.13 deleterious(0.01) unknown(0) TCGA-HU-A4H4-01 7 39991418 39991418 G A CDK13 Missense_Mutation p.R393H 0.07 deleterious(0) unknown(0) TCGA-HU-A4H4-01 7 40027229 40027229 T C CDK13 Missense_Mutation p.Y415H 0.10 deleterious(0.03) unknown(0) TCGA-HU-A4H4-01 7 43447252 43447252 C - HECW1 Frame_Shift_Del p.A243Pfs*14 0.10 TCGA-HU-A4H4-01 7 44091531 44091531 T C DBNL Missense_Mutation p.L81P 0.14 deleterious(0) probably_damaging(0.997) TCGA-HU-A4H4-01 7 50057839 50057839 A - ZPBP Frame_Shift_Del p.F260Lfs*7 0.12 TCGA-HU-A4H4-01 7 5105149 5105149 T A RBAK Missense_Mutation p.F688I 0.11 deleterious(0) probably_damaging(0.997) TCGA-HU-A4H4-01 7 53103594 53103594 T G POM121L12 Missense_Mutation p.L77R 0.10 deleterious(0.03) probably_damaging(0.955) TCGA-HU-A4H4-01 7 5355614 5355614 G T TNRC18 Missense_Mutation p.L2279I 0.08 benign(0.364) TCGA-HU-A4H4-01 7 5567657 5567657 G A ACTB Missense_Mutation p.A321V 0.09 deleterious_low_confidence(0.04) benign(0.359) TCGA-HU-A4H4-01 7 5662487 5662487 G A RNF216 3'UTR 0.06 TCGA-HU-A4H4-01 7 64152304 64152304 T A ZNF107 5'UTR 0.10 TCGA-HU-A4H4-01 7 6647676 6647676 C - C7orf26 Frame_Shift_Del p.P413Rfs*29 0.26 TCGA-HU-A4H4-01 7 82389956 82389956 T C PCLO Missense_Mutation p.Q5096R 0.08 unknown(0) TCGA-HU-A4H4-01 7 82578809 82578809 A G PCLO Missense_Mutation p.Y3699H 0.10 unknown(0) TCGA-HU-A4H4-01 7 87073068 87073068 A - ABCB4 Frame_Shift_Del p.S381Qfs*32 0.09 TCGA-HU-A4H4-01 7 92732286 92732286 T C SAMD9 Missense_Mutation p.E1042G 0.19 deleterious(0.01) possibly_damaging(0.655) TCGA-HU-A4H4-01 7 92764562 92764562 G A SAMD9L Silent p.V241V 0.15 TCGA-HU-A4H4-01 7 92970845 92970845 C T CCDC132 Missense_Mutation p.T722M 0.17 tolerated(0.08) benign(0.386) TCGA-HU-A4H4-01 7 935043 935043 C A GET4 Missense_Mutation p.P323H 0.06 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-HU-A4H4-01 7 94791244 94791244 T G PPP1R9A Missense_Mutation p.F572C 0.15 deleterious(0) probably_damaging(0.996) TCGA-HU-A4H4-01 7 99725164 99725164 C T MBLAC1 Missense_Mutation p.P49L 0.18 deleterious_low_confidence(0) possibly_damaging(0.563) TCGA-HU-A4H4-01 7 99771477 99771477 A G GPC2 Silent p.P291P 0.05 TCGA-HU-A4H4-01 8 10583650 10583650 G T SOX7 Missense_Mutation p.H307Q 0.13 tolerated(0.36) possibly_damaging(0.63) TCGA-HU-A4H4-01 8 110523098 110523098 G A PKHD1L1 Missense_Mutation p.V3830I 0.16 tolerated(0.69) benign(0.002) TCGA-HU-A4H4-01 8 113303840 113303840 A G CSMD3 Missense_Mutation p.V2958A 0.05 tolerated(0.09) possibly_damaging(0.51) TCGA-HU-A4H4-01 8 133146587 133146587 C A KCNQ3 Missense_Mutation p.K583N 0.19 deleterious(0.01) possibly_damaging(0.87) TCGA-HU-A4H4-01 8 133919106 133919106 C T TG Missense_Mutation p.R1270C 0.23 deleterious(0) possibly_damaging(0.513) TCGA-HU-A4H4-01 8 133945896 133945896 A G TG Missense_Mutation p.N1636S 0.07 tolerated(0.22) benign(0.006) TCGA-HU-A4H4-01 8 144776211 144776211 C T ZNF707 Silent p.C209C 0.11 TCGA-HU-A4H4-01 8 145095792 145095792 C A SPATC1 Missense_Mutation p.P364T 0.18 tolerated(0.17) benign(0) TCGA-HU-A4H4-01 8 145623307 145623307 G T CPSF1 Silent p.P645P 0.14 TCGA-HU-A4H4-01 8 1765460 1765460 C T MIR596 RNA 0.10 TCGA-HU-A4H4-01 8 18662245 18662245 T G PSD3 Silent p.R600R 0.14 TCGA-HU-A4H4-01 8 2033439 2033439 G A MYOM2 Missense_Mutation p.E521K 0.12 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H4-01 8 21560366 21560366 T C GFRA2 Missense_Mutation p.D390G 0.17 deleterious(0.04) possibly_damaging(0.656) TCGA-HU-A4H4-01 8 21965115 21965115 G T NUDT18 Missense_Mutation p.P223H 0.06 deleterious(0.01) possibly_damaging(0.893) TCGA-HU-A4H4-01 8 30040606 30040606 C A DCTN6 Missense_Mutation p.L164M 0.08 tolerated(0.08) possibly_damaging(0.78) TCGA-HU-A4H4-01 8 30695503 30695503 A C TEX15 Nonsense_Mutation p.L2383* 0.12 TCGA-HU-A4H4-01 8 37603204 37603204 C A ERLIN2 Intron 0.14 TCGA-HU-A4H4-01 8 41164302 41164302 C T SFRP1 Intron 0.14 TCGA-HU-A4H4-01 8 41801380 41801380 T G KAT6A Missense_Mutation p.H705P 0.10 benign(0.362) TCGA-HU-A4H4-01 8 55537275 55537275 T C RP1 Missense_Mutation p.V278A 0.15 deleterious(0.04) benign(0.01) TCGA-HU-A4H4-01 8 61735157 61735158 - T CHD7 Frame_Shift_Ins p.L1020Ffs*33 0.12 TCGA-HU-A4H4-01 8 6478905 6478905 A G MCPH1 Intron 0.34 TCGA-HU-A4H4-01 8 66582151 66582151 A G MTFR1 5'UTR 0.05 TCGA-HU-A4H4-01 8 66659908 66659908 A G PDE7A Silent p.D138D 0.20 TCGA-HU-A4H4-01 8 68092151 68092151 T G CSPP1 Missense_Mutation p.S1065R 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-HU-A4H4-01 8 68931905 68931905 T C PREX2 Missense_Mutation p.F112S 0.10 deleterious(0.01) possibly_damaging(0.637) TCGA-HU-A4H4-01 8 98828297 98828297 C A LAPTM4B Silent p.A190A 0.06 TCGA-HU-A4H4-01 9 107367621 107367621 G T OR13C2 Silent p.G96G 0.05 TCGA-HU-A4H4-01 9 107591376 107591376 G A ABCA1 Silent p.L646L 0.19 TCGA-HU-A4H4-01 9 109694678 109694678 G - ZNF462 Intron 0.22 TCGA-HU-A4H4-01 9 114454059 114454060 - T C9orf84 Frame_Shift_Ins p.C1336Mfs*5 0.16 TCGA-HU-A4H4-01 9 115759835 115759835 T G ZNF883 RNA 0.08 TCGA-HU-A4H4-01 9 116930295 116930295 G A COL27A1 Missense_Mutation p.G154R 0.15 unknown(0) TCGA-HU-A4H4-01 9 117266634 117266634 C T DFNB31 Missense_Mutation p.E150K 0.13 deleterious(0.02) probably_damaging(0.974) TCGA-HU-A4H4-01 9 118989725 118989725 A G PAPPA Silent p.A709A 0.15 TCGA-HU-A4H4-01 9 119737575 119737575 A C ASTN2 Missense_Mutation p.F550V 0.08 deleterious_low_confidence(0.01) unknown(0) TCGA-HU-A4H4-01 9 120475722 120475722 A T TLR4 Missense_Mutation p.E439V 0.25 tolerated(0.21) benign(0.007) TCGA-HU-A4H4-01 9 124543823 124543823 A G DAB2IP Missense_Mutation p.D1104G 0.21 deleterious(0) possibly_damaging(0.886) TCGA-HU-A4H4-01 9 124936902 124936902 C T MORN5 Silent p.N145N 0.13 TCGA-HU-A4H4-01 9 125330470 125330470 G A OR1L8 Missense_Mutation p.A96V 0.10 tolerated(0.28) benign(0.128) TCGA-HU-A4H4-01 9 125512217 125512217 A G OR1L6 Missense_Mutation p.I31V 0.03 tolerated(0.09) benign(0.006) TCGA-HU-A4H4-01 9 128064717 128064717 A G GAPVD1 Missense_Mutation p.H214R 0.18 tolerated(0.14) probably_damaging(0.995) TCGA-HU-A4H4-01 9 128099344 128099344 G A GAPVD1 Missense_Mutation p.A853T 0.14 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-HU-A4H4-01 9 132401727 132401727 A G ASB6 Missense_Mutation p.V119A 0.17 tolerated(0.11) probably_damaging(0.996) TCGA-HU-A4H4-01 9 135545697 135545697 G A DDX31 5'UTR 0.21 TCGA-HU-A4H4-01 9 136208461 136208461 A G MED22 Missense_Mutation p.L166P 0.12 tolerated_low_confidence(0.14) benign(0.002) TCGA-HU-A4H4-01 9 136380685 136380685 G A TMEM8C Silent p.S148S 0.04 TCGA-HU-A4H4-01 9 136913497 136913497 G A BRD3 Missense_Mutation p.P265L 0.16 tolerated(0.1) benign(0) TCGA-HU-A4H4-01 9 137726910 137726910 T C COL5A1 Missense_Mutation p.Y1744H 0.11 unknown(0) TCGA-HU-A4H4-01 9 138651627 138651627 C T KCNT1 Silent p.D319D 0.14 TCGA-HU-A4H4-01 9 139651016 139651016 C T LCN8 Missense_Mutation p.V62M 0.12 tolerated(0.07) benign(0.424) TCGA-HU-A4H4-01 9 140137547 140137547 A G TUBB4B Missense_Mutation p.M293V 0.18 tolerated_low_confidence(0.07) benign(0.013) TCGA-HU-A4H4-01 9 140400093 140400095 CTT - PNPLA7 In_Frame_Del p.K482del 0.14 TCGA-HU-A4H4-01 9 15510205 15510205 G A PSIP1 5'UTR 0.14 TCGA-HU-A4H4-01 9 26910403 26910403 T C PLAA Silent p.T530T 0.17 TCGA-HU-A4H4-01 9 27948864 27948864 G T LINGO2 Missense_Mutation p.N602K 0.15 deleterious(0.01) probably_damaging(0.996) TCGA-HU-A4H4-01 9 3330369 3330369 C T RFX3 Missense_Mutation p.V122I 0.25 tolerated(0.19) benign(0.053) TCGA-HU-A4H4-01 9 33386990 33386990 A C AQP7 Missense_Mutation p.V82G 0.06 deleterious(0) probably_damaging(0.965) TCGA-HU-A4H4-01 9 35547010 35547010 T A RUSC2 Missense_Mutation p.S164R 0.09 deleterious(0) benign(0.432) TCGA-HU-A4H4-01 9 35869594 35869594 T C OR13J1 Missense_Mutation p.I269V 0.08 tolerated(0.49) benign(0.014) TCGA-HU-A4H4-01 9 37746136 37746136 G A FRMPD1 Silent p.P1369P 0.05 TCGA-HU-A4H4-01 9 39103747 39103747 G T CNTNAP3 Missense_Mutation p.L844M 0.14 tolerated(0.06) probably_damaging(0.999) TCGA-HU-A4H4-01 9 4117901 4117901 A G GLIS3 Missense_Mutation p.I526T 0.04 deleterious(0) probably_damaging(0.996) TCGA-HU-A4H4-01 9 5358278 5358278 T C PLGRKT Silent p.K135K 0.05 TCGA-HU-A4H4-01 9 71628021 71628021 C T PRKACG Missense_Mutation p.D330N 0.08 tolerated(0.34) benign(0.006) TCGA-HU-A4H4-01 9 732452 732452 T G KANK1 Missense_Mutation p.V1027G 0.05 tolerated(0.38) benign(0.002) TCGA-HU-A4H4-01 9 77684723 77684723 A G NMRK1 Silent p.L108L 0.20 TCGA-HU-A4H4-01 9 8339045 8339045 C A PTPRD Missense_Mutation p.E1752D 0.20 tolerated(0.06) probably_damaging(0.954) TCGA-HU-A4H4-01 9 88655669 88655669 G A GOLM1 Silent p.N194N 0.17 TCGA-HU-A4H4-01 9 96425855 96425855 G A PHF2 Silent p.S625S 0.20 TCGA-HU-A4H4-01 9 99697671 99697671 C T NUTM2G Missense_Mutation p.R259W 0.16 tolerated(0.17) benign(0.02) TCGA-HU-A4H4-01 X 100297270 100297270 G T TRMT2B Silent p.G3G 0.13 TCGA-HU-A4H4-01 X 100536708 100536708 C T TAF7L Silent p.K240K 0.12 TCGA-HU-A4H4-01 X 101910109 101910109 T C GPRASP1 Missense_Mutation p.I423T 0.15 tolerated(0.31) benign(0.002) TCGA-HU-A4H4-01 X 101970627 101970627 A G GPRASP2 Missense_Mutation p.Y277C 0.13 tolerated(0.18) benign(0.003) TCGA-HU-A4H4-01 X 102885195 102885195 A G TCEAL1 Missense_Mutation p.I117M 0.06 deleterious(0) probably_damaging(0.955) TCGA-HU-A4H4-01 X 109922617 109922617 T C CHRDL1 Missense_Mutation p.K398R 0.12 tolerated(0.17) possibly_damaging(0.785) TCGA-HU-A4H4-01 X 110644413 110644413 G C DCX Silent p.A251A 0.23 TCGA-HU-A4H4-01 X 111020035 111020035 C A TRPC5 Missense_Mutation p.G810W 0.16 deleterious_low_confidence(0.03) benign(0.221) TCGA-HU-A4H4-01 X 117744238 117744238 C - DOCK11 Frame_Shift_Del p.R986Efs*20 0.11 TCGA-HU-A4H4-01 X 11793295 11793295 G A MSL3 3'UTR 0.50 TCGA-HU-A4H4-01 X 131762948 131762948 G A HS6ST2 Missense_Mutation p.P414L 0.12 deleterious(0.03) benign(0.008) TCGA-HU-A4H4-01 X 135427817 135427817 G A GPR112 Missense_Mutation p.S651N 0.08 deleterious(0) benign(0.024) TCGA-HU-A4H4-01 X 153039391 153039391 G A PLXNB3 Silent p.P1142P 0.06 TCGA-HU-A4H4-01 X 19391803 19391803 G A MAP3K15 Silent p.R928R 0.12 TCGA-HU-A4H4-01 X 31893303 31893303 A T DMD Splice_Site p.X2366_splice 0.17 TCGA-HU-A4H4-01 X 32328290 32328290 T C DMD Missense_Mutation p.Q2009R 0.05 benign(0.145) TCGA-HU-A4H4-01 X 49957452 49957452 G A AKAP4 Missense_Mutation p.L638F 0.13 deleterious(0) probably_damaging(1) TCGA-HU-A4H4-01 X 50055619 50055619 T C CCNB3 Missense_Mutation p.M1137T 0.08 tolerated(0.08) benign(0.199) TCGA-HU-A4H4-01 X 54784484 54784484 T C ITIH6 Missense_Mutation p.T675A 0.15 tolerated(0.47) benign(0.001) TCGA-HU-A4H4-01 X 64738227 64738227 A G LAS1L Missense_Mutation p.S523P 0.05 tolerated(0.12) benign(0.005) TCGA-HU-A4H4-01 X 67941391 67941391 T A STARD8 Missense_Mutation p.D754E 0.08 tolerated(1) benign(0) TCGA-HU-A4H4-01 X 69478742 69478742 G A P2RY4 Missense_Mutation p.R245C 0.10 deleterious(0.03) benign(0.12) TCGA-HU-A4H4-01 X 73960013 73960013 T C KIAA2022 Missense_Mutation p.E1460G 0.07 deleterious(0) possibly_damaging(0.894) TCGA-HU-A4H4-01 X 76920173 76920173 T - ATRX Frame_Shift_Del p.R1302Efs*44 0.15 TCGA-HU-A4H4-01 X 91133620 91133620 T C PCDH11X Missense_Mutation p.V794A 0.18 tolerated(0.11) benign(0.02) TCGA-HU-A4H4-01 X 96140164 96140164 A T RPA4 3'UTR 0.18 TCGA-HU-A4H4-01 X 9716642 9716642 C T GPR143 Missense_Mutation p.A174T 0.16 tolerated(0.45) benign(0.06) TCGA-HU-A4H4-01 X 99551676 99551676 C T PCDH19 Missense_Mutation p.A1016T 0.11 tolerated(0.1) benign(0.339) TCGA-HU-A4H5-01 10 101502973 101502973 G A CUTC Missense_Mutation p.G86E 0.51 tolerated(0.05) probably_damaging(0.937) TCGA-HU-A4H5-01 10 105349314 105349314 C A NEURL1 Nonsense_Mutation p.C461* 0.62 TCGA-HU-A4H5-01 10 119043502 119043502 T G PDZD8 Missense_Mutation p.L914F 0.18 tolerated(0.75) benign(0.003) TCGA-HU-A4H5-01 10 123845760 123845760 G A TACC2 Missense_Mutation p.E1249K 0.32 benign(0.026) TCGA-HU-A4H5-01 10 45938620 45938620 C T ALOX5 Silent p.Y469Y 0.18 TCGA-HU-A4H5-01 10 61432609 61432609 A C SLC16A9 Missense_Mutation p.F87V 0.14 tolerated(1) benign(0.104) TCGA-HU-A4H5-01 10 62631340 62631340 T G RHOBTB1 Missense_Mutation p.Q664P 0.42 deleterious(0.04) probably_damaging(0.99) TCGA-HU-A4H5-01 10 70231547 70231547 C G DNA2 Splice_Site p.X111_splice 0.22 TCGA-HU-A4H5-01 10 73767623 73767623 G T CHST3 Silent p.R278R 0.35 TCGA-HU-A4H5-01 11 107197652 107197652 T A CWF19L2 Missense_Mutation p.K890I 0.25 deleterious(0) possibly_damaging(0.611) TCGA-HU-A4H5-01 11 111366030 111366030 A C BTG4 Missense_Mutation p.L174V 0.19 tolerated(0.34) benign(0.005) TCGA-HU-A4H5-01 11 111749799 111749799 G A FDXACB1 Silent p.L20L 0.18 TCGA-HU-A4H5-01 11 116661139 116661139 C A APOA5 Missense_Mutation p.G269V 0.46 tolerated(0.05) possibly_damaging(0.567) TCGA-HU-A4H5-01 11 117299141 117299141 C T DSCAML1 Missense_Mutation p.G2082D 0.15 deleterious_low_confidence(0.02) benign(0.116) TCGA-HU-A4H5-01 11 120998579 120998579 C T TECTA Silent p.C631C 0.40 TCGA-HU-A4H5-01 11 122848402 122848402 G A BSX Silent p.D219D 0.38 TCGA-HU-A4H5-01 11 123676812 123676812 G A OR6M1 Silent p.C82C 0.35 TCGA-HU-A4H5-01 11 125547724 125547724 G A ACRV1 Missense_Mutation p.A174V 0.77 tolerated(0.09) benign(0.012) TCGA-HU-A4H5-01 11 35492330 35492330 G A PAMR1 Silent p.C177C 0.62 TCGA-HU-A4H5-01 11 45891339 45891339 C T CRY2 Missense_Mutation p.L410F 0.32 deleterious(0) probably_damaging(1) TCGA-HU-A4H5-01 11 45926588 45926588 A C MAPK8IP1 Missense_Mutation p.N654H 0.36 tolerated(0.05) probably_damaging(0.962) TCGA-HU-A4H5-01 11 46671862 46671862 A C ATG13 Missense_Mutation p.L151F 0.43 tolerated(0.22) probably_damaging(0.924) TCGA-HU-A4H5-01 11 56257957 56257957 T A OR5M8 Missense_Mutation p.K297I 0.10 tolerated(0.12) probably_damaging(0.96) TCGA-HU-A4H5-01 11 57457633 57457633 T A ZDHHC5 Missense_Mutation p.L172H 0.28 deleterious(0) probably_damaging(0.997) TCGA-HU-A4H5-01 11 59210971 59210971 G A OR5A1 Missense_Mutation p.M110I 0.19 deleterious(0.02) benign(0.005) TCGA-HU-A4H5-01 11 63141464 63141464 G C SLC22A9 Missense_Mutation p.A254P 0.18 deleterious(0.01) probably_damaging(0.956) TCGA-HU-A4H5-01 11 67947642 67947642 G T SUV420H1 Missense_Mutation p.H112N 0.18 tolerated_low_confidence(0.13) benign(0.004) TCGA-HU-A4H5-01 11 68582853 68582853 T A CPT1A Missense_Mutation p.Q30H 0.21 tolerated(0.27) benign(0.004) TCGA-HU-A4H5-01 11 75898212 75898212 T C WNT11 Missense_Mutation p.Y321C 0.39 deleterious(0.04) probably_damaging(0.999) TCGA-HU-A4H5-01 12 111990188 111990188 C T ATXN2 Missense_Mutation p.S316N 0.16 benign(0.029) TCGA-HU-A4H5-01 12 123307998 123307998 T G CCDC62 3'UTR 0.85 TCGA-HU-A4H5-01 12 2795345 2795345 C T CACNA1C Silent p.S1946S 0.31 TCGA-HU-A4H5-01 12 280291 280291 C G IQSEC3 Silent p.A1026A 0.37 TCGA-HU-A4H5-01 12 30834694 30834694 C T IPO8 Nonsense_Mutation p.W127* 0.59 TCGA-HU-A4H5-01 12 49226289 49226289 G C DDX23 Missense_Mutation p.P624R 0.73 deleterious(0) probably_damaging(0.937) TCGA-HU-A4H5-01 12 53007514 53007514 G C KRT73 Silent p.A314A 0.60 TCGA-HU-A4H5-01 12 72425323 72425323 C T TPH2 Missense_Mutation p.R441C 0.52 deleterious(0) probably_damaging(0.993) TCGA-HU-A4H5-01 12 75444690 75444690 A T KCNC2 Missense_Mutation p.F365L 0.20 tolerated(0.09) probably_damaging(0.999) TCGA-HU-A4H5-01 12 81647273 81647273 G C ACSS3 Splice_Site p.X607_splice 0.28 TCGA-HU-A4H5-01 12 8329733 8329733 C A ZNF705A Missense_Mutation p.L153I 0.62 tolerated(0.23) possibly_damaging(0.636) TCGA-HU-A4H5-01 13 101720273 101720273 T A NALCN Missense_Mutation p.R1481S 0.15 deleterious(0.01) possibly_damaging(0.715) TCGA-HU-A4H5-01 13 108922355 108922355 T G TNFSF13B Missense_Mutation p.S38A 0.10 tolerated(0.26) benign(0.007) TCGA-HU-A4H5-01 13 113733042 113733042 C T MCF2L Silent p.A599A 0.17 TCGA-HU-A4H5-01 13 113834471 113834471 C A PCID2 Splice_Site p.X341_splice 0.42 TCGA-HU-A4H5-01 13 32869673 32869673 C T FRY 3'UTR 0.38 TCGA-HU-A4H5-01 13 60545039 60545039 G C DIAPH3 Missense_Mutation p.P636A 0.12 tolerated(0.05) probably_damaging(0.997) TCGA-HU-A4H5-01 13 76055753 76055753 T C TBC1D4 Missense_Mutation p.T51A 0.28 deleterious(0) probably_damaging(0.995) TCGA-HU-A4H5-01 13 86370114 86370114 G A SLITRK6 Missense_Mutation p.P177L 0.33 tolerated(0.31) benign(0.243) TCGA-HU-A4H5-01 14 103996627 103996627 C A TRMT61A Silent p.G104G 0.23 TCGA-HU-A4H5-01 14 105960171 105960171 G C C14orf80 Splice_Site p.X196_splice 0.34 TCGA-HU-A4H5-01 14 22447126 22447126 C T TRAV8-6 Missense_Mutation p.A36V 0.34 tolerated(0.09) benign(0.012) TCGA-HU-A4H5-01 14 25101228 25101228 C T GZMB Missense_Mutation p.G146S 0.29 deleterious(0.02) probably_damaging(0.997) TCGA-HU-A4H5-01 14 29237432 29237432 T C FOXG1 Missense_Mutation p.L316P 0.22 deleterious(0.02) benign(0.361) TCGA-HU-A4H5-01 14 31626445 31626459 CTTCTTTTAACAGTG - HECTD1 In_Frame_Del p.A558_E562del 0.23 TCGA-HU-A4H5-01 14 34269574 34269574 C A NPAS3 Missense_Mutation p.S687R 0.19 deleterious_low_confidence(0.05) benign(0.003) TCGA-HU-A4H5-01 14 35786533 35786533 G T PSMA6 3'UTR 0.27 TCGA-HU-A4H5-01 14 39583510 39583510 A T GEMIN2 Translation_Start_Site p.M1? 0.21 deleterious_low_confidence(0) benign(0.009) TCGA-HU-A4H5-01 14 60213055 60213055 T C RTN1 Missense_Mutation p.K129R 0.32 tolerated(0.14) benign(0.092) TCGA-HU-A4H5-01 14 75520211 75520211 G A ACYP1 Missense_Mutation p.A79V 0.31 deleterious(0.04) possibly_damaging(0.71) TCGA-HU-A4H5-01 14 91791123 91791123 C A CCDC88C Missense_Mutation p.A448S 0.35 deleterious(0.04) possibly_damaging(0.576) TCGA-HU-A4H5-01 14 93755041 93755041 A C BTBD7 Intron 0.24 TCGA-HU-A4H5-01 14 96798640 96798640 A T ATG2B Splice_Site p.X490_splice 0.32 TCGA-HU-A4H5-01 15 22382673 22382673 C A OR4N4 Silent p.A67A 0.11 TCGA-HU-A4H5-01 15 37110170 37110170 G C CSNK1A1P1 RNA 0.12 TCGA-HU-A4H5-01 15 38234586 38234586 T A TMCO5A Intron 0.52 TCGA-HU-A4H5-01 15 41482139 41482139 G A EXD1 Missense_Mutation p.T293I 0.59 tolerated(0.14) benign(0.005) TCGA-HU-A4H5-01 15 42171635 42171635 A G SPTBN5 Missense_Mutation p.V1002A 0.60 benign(0.013) TCGA-HU-A4H5-01 15 43483628 43483628 G T CCNDBP1 Missense_Mutation p.L205F 0.61 deleterious(0.04) benign(0.272) TCGA-HU-A4H5-01 15 43572086 43572086 G C TGM7 Missense_Mutation p.A472G 0.50 tolerated(0.32) benign(0.003) TCGA-HU-A4H5-01 15 43892850 43892850 A T STRC Missense_Mutation p.H1625Q 0.21 tolerated(0.62) benign(0.206) TCGA-HU-A4H5-01 15 58306438 58306438 T C ALDH1A2 Silent p.R53R 0.37 TCGA-HU-A4H5-01 15 64200767 64200767 G A DAPK2 Silent p.I355I 0.43 TCGA-HU-A4H5-01 15 71124440 71124440 T G LARP6 Missense_Mutation p.D476A 0.28 deleterious(0) probably_damaging(1) TCGA-HU-A4H5-01 15 72499084 72499084 C T PKM Silent p.V375V 0.60 TCGA-HU-A4H5-01 15 75122677 75122677 G T CPLX3 Missense_Mutation p.E153D 0.18 deleterious(0.03) probably_damaging(0.978) TCGA-HU-A4H5-01 15 90119124 90119124 G A TICRR Missense_Mutation p.A103T 0.20 deleterious(0.01) probably_damaging(0.983) TCGA-HU-A4H5-01 15 97328506 97328506 T A SPATA8 3'UTR 0.50 TCGA-HU-A4H5-01 16 1395887 1395887 G T BAIAP3 Missense_Mutation p.G770V 0.29 tolerated(0.16) benign(0.011) TCGA-HU-A4H5-01 16 29888680 29888680 G A SEZ6L2 Silent p.S607S 0.57 TCGA-HU-A4H5-01 16 31049878 31049878 G A STX4 Silent p.S204S 0.69 TCGA-HU-A4H5-01 16 67686189 67686189 G - RLTPR Frame_Shift_Del p.E923Nfs*146 0.39 TCGA-HU-A4H5-01 16 69154257 69154257 C T CHTF8 Silent p.R25R 0.47 TCGA-HU-A4H5-01 16 71668441 71668441 C A MARVELD3 Intron 0.60 TCGA-HU-A4H5-01 16 89357231 89357231 T - ANKRD11 Frame_Shift_Del p.T135Qfs*27 0.29 TCGA-HU-A4H5-01 17 12013711 12013722 ACTTAAAAGAAA - MAP2K4 In_Frame_Del p.E221_K224del 0.36 TCGA-HU-A4H5-01 17 16705670 16705670 G T CCDC144A 3'UTR 0.40 TCGA-HU-A4H5-01 17 18284926 18284926 G A EVPLL Silent p.Q76Q 0.24 TCGA-HU-A4H5-01 17 18284928 18284928 T C EVPLL Missense_Mutation p.L77P 0.23 deleterious(0) probably_damaging(0.984) TCGA-HU-A4H5-01 17 26938930 26938950 CCCTTCCCCAAATCCTTGGCA - RP11-192H23.4 Intron 0.42 TCGA-HU-A4H5-01 17 28537594 28537594 T C SLC6A4 Missense_Mutation p.E463G 0.22 deleterious(0) probably_damaging(1) TCGA-HU-A4H5-01 17 38282661 38282661 T A MSL1 Splice_Site p.X68_splice 0.31 TCGA-HU-A4H5-01 17 3839595 3839595 A C ATP2A3 Missense_Mutation p.S830R 0.37 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H5-01 17 38645216 38645216 T A TNS4 Nonsense_Mutation p.K149* 0.57 TCGA-HU-A4H5-01 17 39728197 39728197 C T KRT9 Silent p.G16G 0.70 TCGA-HU-A4H5-01 17 42392111 42392111 A G RUNDC3A Missense_Mutation p.Y156C 0.10 deleterious(0) possibly_damaging(0.9) TCGA-HU-A4H5-01 17 42926756 42926756 G C HIGD1B Missense_Mutation p.G79R 0.41 deleterious(0) probably_damaging(1) TCGA-HU-A4H5-01 17 43005443 43005443 C G KIF18B Missense_Mutation p.D743H 0.11 deleterious(0) possibly_damaging(0.812) TCGA-HU-A4H5-01 17 4416589 4416589 G A SPNS2 Missense_Mutation p.A140T 0.78 tolerated(0.09) benign(0.249) TCGA-HU-A4H5-01 17 45259002 45259002 G T CDC27 Missense_Mutation p.A10D 0.07 deleterious(0) probably_damaging(0.998) TCGA-HU-A4H5-01 17 49354532 49354532 G C UTP18 Missense_Mutation p.L293F 0.29 tolerated(0.16) possibly_damaging(0.496) TCGA-HU-A4H5-01 17 51900950 51900950 G A KIF2B Missense_Mutation p.E186K 0.42 deleterious(0.04) possibly_damaging(0.783) TCGA-HU-A4H5-01 17 5442791 5442791 G A NLRP1 Silent p.G938G 0.15 TCGA-HU-A4H5-01 17 58123518 58123518 T G HEATR6 Missense_Mutation p.T948P 0.24 tolerated(0.08) benign(0.04) TCGA-HU-A4H5-01 17 61829423 61829443 GTTCTCTTCTACTCGGGCACG - CCDC47 In_Frame_Del p.R410_N416del 0.22 TCGA-HU-A4H5-01 17 62496077 62496077 C T DDX5 Missense_Mutation p.M603I 0.24 tolerated_low_confidence(0.06) benign(0.002) TCGA-HU-A4H5-01 17 63554148 63554148 G C AXIN2 Silent p.L197L 0.32 TCGA-HU-A4H5-01 17 65862627 65862627 G C BPTF Missense_Mutation p.S495T 0.48 possibly_damaging(0.876) TCGA-HU-A4H5-01 17 66110573 66110573 G T LINC00674 RNA 0.59 TCGA-HU-A4H5-01 17 66929370 66929370 G C ABCA8 Nonsense_Mutation p.S170* 0.17 TCGA-HU-A4H5-01 17 7794305 7794305 G T CHD3 Silent p.L203L 0.24 TCGA-HU-A4H5-01 17 79180992 79180992 C G AZI1 Missense_Mutation p.S107T 0.55 tolerated(0.23) benign(0.158) TCGA-HU-A4H5-01 17 79226981 79226981 C G SLC38A10 Missense_Mutation p.E450Q 0.48 tolerated(0.09) benign(0.322) TCGA-HU-A4H5-01 17 8108360 8108360 C T AURKB Silent p.V288V 0.25 TCGA-HU-A4H5-01 18 32887361 32887361 G T ZNF271 RNA 0.06 TCGA-HU-A4H5-01 18 46476217 46476217 C T SMAD7 Missense_Mutation p.C193Y 0.13 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H5-01 19 10205482 10205482 C A ANGPTL6 Missense_Mutation p.A239S 0.39 tolerated(0.64) benign(0.006) TCGA-HU-A4H5-01 19 10893683 10893683 A T DNM2 Nonsense_Mutation p.K246* 0.33 TCGA-HU-A4H5-01 19 12491160 12491168 TCTTTGAAA - CTD-3105H18.14 3'UTR 0.17 TCGA-HU-A4H5-01 19 12984515 12984515 G C MAST1 Missense_Mutation p.G1182R 0.32 deleterious(0.01) probably_damaging(1) TCGA-HU-A4H5-01 19 13418938 13418938 C A CACNA1A Missense_Mutation p.G637C 0.30 probably_damaging(0.999) TCGA-HU-A4H5-01 19 14521880 14521880 G A DDX39A Silent p.L178L 0.17 TCGA-HU-A4H5-01 19 15484654 15484654 T C AKAP8 Missense_Mutation p.K105R 0.34 tolerated(0.12) probably_damaging(0.998) TCGA-HU-A4H5-01 19 15769193 15769193 G T CYP4F3 Missense_Mutation p.R412L 0.41 deleterious(0.03) possibly_damaging(0.483) TCGA-HU-A4H5-01 19 20045443 20045443 C A ZNF93 Missense_Mutation p.T560N 0.42 deleterious(0) benign(0.338) TCGA-HU-A4H5-01 19 20808345 20808345 A T ZNF626 Nonsense_Mutation p.L113* 0.19 TCGA-HU-A4H5-01 19 31039034 31039034 C A ZNF536 Missense_Mutation p.D836E 0.29 tolerated(0.17) benign(0.024) TCGA-HU-A4H5-01 19 33698246 33698246 G T LRP3 Missense_Mutation p.C693F 0.53 tolerated_low_confidence(0.45) benign(0.006) TCGA-HU-A4H5-01 19 3613108 3613108 C A CACTIN Silent p.P578P 0.63 TCGA-HU-A4H5-01 19 39062794 39062794 A T RYR1 Missense_Mutation p.M4628L 0.30 unknown(0) TCGA-HU-A4H5-01 19 3969677 3969677 C T DAPK3 Silent p.L19L 0.52 TCGA-HU-A4H5-01 19 41765531 41765531 T G AXL Missense_Mutation p.L803V 0.32 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H5-01 19 46215449 46215449 G A FBXO46 Silent p.D435D 0.44 TCGA-HU-A4H5-01 19 47230796 47230796 G A STRN4 Silent p.F394F 0.20 TCGA-HU-A4H5-01 19 49965150 49965150 G - ALDH16A1 Frame_Shift_Del p.A257Pfs*25 0.44 TCGA-HU-A4H5-01 19 49965151 49965151 C A ALDH16A1 Missense_Mutation p.A257D 0.47 tolerated(0.61) possibly_damaging(0.529) TCGA-HU-A4H5-01 19 50098928 50098928 G A PRR12 Missense_Mutation p.G446S 0.33 probably_damaging(0.935) TCGA-HU-A4H5-01 19 5212247 5212247 C T PTPRS Missense_Mutation p.R1595H 0.23 deleterious(0) probably_damaging(1) TCGA-HU-A4H5-01 19 54244564 54244564 C G RNU6-982P 3'Flank 0.47 TCGA-HU-A4H5-01 19 54394966 54394966 G C PRKCG Missense_Mutation p.G190R 0.60 deleterious(0.01) probably_damaging(0.994) TCGA-HU-A4H5-01 19 56466661 56466661 G A NLRP8 Missense_Mutation p.G413R 0.26 tolerated(0.08) benign(0.314) TCGA-HU-A4H5-01 19 58115657 58115657 G A ZNF530 Missense_Mutation p.A15T 0.27 tolerated(1) benign(0.005) TCGA-HU-A4H5-01 19 8203127 8203127 C T FBN3 Missense_Mutation p.G367R 0.74 tolerated(0.27) benign(0.002) TCGA-HU-A4H5-01 1 100684199 100684199 G A DBT Silent p.L180L 0.27 TCGA-HU-A4H5-01 1 110049929 110049929 C G AMIGO1 3'UTR 0.25 TCGA-HU-A4H5-01 1 113456781 113456781 A T SLC16A1 Missense_Mutation p.L412H 0.16 deleterious(0) probably_damaging(0.998) TCGA-HU-A4H5-01 1 115130457 115130457 C A DENND2C Nonsense_Mutation p.E850* 0.25 TCGA-HU-A4H5-01 1 120480053 120480053 A C NOTCH2 Missense_Mutation p.V1125G 0.41 tolerated(0.35) benign(0.077) TCGA-HU-A4H5-01 1 12907401 12907401 C A HNRNPCL1 Missense_Mutation p.A248S 0.18 deleterious(0.05) possibly_damaging(0.777) TCGA-HU-A4H5-01 1 12921227 12921235 CTAGGAGCT - PRAMEF2 In_Frame_Del p.G341_L343del 0.13 TCGA-HU-A4H5-01 1 144882804 144882804 T A PDE4DIP Missense_Mutation p.E1072V 0.10 deleterious(0) probably_damaging(1) TCGA-HU-A4H5-01 1 151378394 151378394 G A POGZ Silent p.R1039R 0.10 TCGA-HU-A4H5-01 1 154479756 154479756 G C TDRD10 Silent p.L14L 0.17 TCGA-HU-A4H5-01 1 158984584 158984584 A T IFI16 Missense_Mutation p.K38N 0.13 tolerated(0.11) benign(0.153) TCGA-HU-A4H5-01 1 16261743 16261743 C T SPEN Missense_Mutation p.S3003L 0.39 benign(0.003) TCGA-HU-A4H5-01 1 173915728 173915728 T C RC3H1 Silent p.S949S 0.35 TCGA-HU-A4H5-01 1 176118177 176118177 C A RFWD2 Nonsense_Mutation p.E266* 0.59 TCGA-HU-A4H5-01 1 177250236 177250236 G C BRINP2 Missense_Mutation p.V642L 0.57 deleterious(0.01) probably_damaging(0.978) TCGA-HU-A4H5-01 1 19436703 19436703 G A UBR4 Missense_Mutation p.L3998F 0.27 probably_damaging(0.969) TCGA-HU-A4H5-01 1 196659341 196659341 G C CFH Missense_Mutation p.W436C 0.35 deleterious(0) probably_damaging(1) TCGA-HU-A4H5-01 1 201789042 201789042 C - NAV1 Frame_Shift_Del p.L1873Ffs*66 0.17 TCGA-HU-A4H5-01 1 204945883 204945883 G C NFASC Missense_Mutation p.E597D 0.29 tolerated(0.18) probably_damaging(0.936) TCGA-HU-A4H5-01 1 20517040 20517040 G T UBXN10 Intron 0.18 TCGA-HU-A4H5-01 1 20975025 20975025 A G PINK1 Missense_Mutation p.D384G 0.36 deleterious(0.02) probably_damaging(0.984) TCGA-HU-A4H5-01 1 21904089 21904089 C A ALPL Missense_Mutation p.A508E 0.22 tolerated(0.68) unknown(0) TCGA-HU-A4H5-01 1 219366473 219366473 T C LYPLAL1 Missense_Mutation p.F81L 0.22 tolerated(0.59) benign(0.001) TCGA-HU-A4H5-01 1 228333735 228333735 A G GUK1 Missense_Mutation p.R62G 0.41 deleterious(0) probably_damaging(0.998) TCGA-HU-A4H5-01 1 22903206 22903206 C T EPHA8 Missense_Mutation p.T219M 0.33 deleterious(0) probably_damaging(0.998) TCGA-HU-A4H5-01 1 229730770 229730770 C G TAF5L Silent p.T348T 0.34 TCGA-HU-A4H5-01 1 231377075 231377075 C G GNPAT 5'UTR 0.04 TCGA-HU-A4H5-01 1 235324532 235324532 C G RBM34 Missense_Mutation p.E4Q 0.12 tolerated_low_confidence(0.11) benign(0.28) TCGA-HU-A4H5-01 1 235377164 235377164 C A ARID4B Missense_Mutation p.M587I 0.47 tolerated(0.9) benign(0.081) TCGA-HU-A4H5-01 1 235866229 235866229 G A LYST Nonsense_Mutation p.R3398* 0.25 TCGA-HU-A4H5-01 1 243289777 243289777 C T CEP170 Missense_Mutation p.E1577K 0.20 tolerated_low_confidence(0.06) probably_damaging(0.995) TCGA-HU-A4H5-01 1 24409198 24409198 T C MYOM3 Silent p.T659T 0.36 TCGA-HU-A4H5-01 1 24433597 24433597 C T MYOM3 Missense_Mutation p.R123H 0.29 deleterious(0.04) benign(0.339) TCGA-HU-A4H5-01 1 34052731 34052731 G T CSMD2 Silent p.L2300L 0.24 TCGA-HU-A4H5-01 1 34209071 34209082 GTTGAAGGCCAG - CSMD2 In_Frame_Del p.L618_N621del 0.36 TCGA-HU-A4H5-01 1 40230409 40230409 A G BMP8B Missense_Mutation p.F252L 0.27 deleterious(0.02) benign(0.072) TCGA-HU-A4H5-01 1 54518883 54518883 A T TMEM59 5'UTR 0.54 TCGA-HU-A4H5-01 1 65247062 65247062 G C RAVER2 Splice_Site p.X263_splice 0.37 TCGA-HU-A4H5-01 1 68512430 68512430 G C DIRAS3 Missense_Mutation p.T184S 0.49 tolerated(0.36) benign(0.101) TCGA-HU-A4H5-01 1 68616029 68616029 C T WLS Missense_Mutation p.A270T 0.25 tolerated(0.15) possibly_damaging(0.767) TCGA-HU-A4H5-01 1 883896 883896 C T NOC2L Missense_Mutation p.V511I 0.37 tolerated(0.38) benign(0.03) TCGA-HU-A4H5-01 20 20453520 20453520 G A RALGAPA2 Silent p.I1816I 0.72 TCGA-HU-A4H5-01 20 25388426 25388426 G C GINS1 5'UTR 0.12 TCGA-HU-A4H5-01 20 41385177 41385177 C T PTPRT Missense_Mutation p.V262I 0.22 tolerated(0.26) benign(0) TCGA-HU-A4H5-01 20 44003762 44003762 A G TP53TG5 Missense_Mutation p.S229P 0.40 tolerated(0.53) benign(0.004) TCGA-HU-A4H5-01 20 52198293 52198293 G C ZNF217 Missense_Mutation p.A358G 0.05 tolerated(0.1) benign(0.005) TCGA-HU-A4H5-01 20 58560139 58560139 T G CDH26 Missense_Mutation p.D264E 0.14 tolerated(1) benign(0.066) TCGA-HU-A4H5-01 20 60859101 60859101 G A OSBPL2 Splice_Site p.X291_splice 0.12 TCGA-HU-A4H5-01 20 61040443 61040443 G T GATA5 Missense_Mutation p.P331T 0.06 deleterious(0.04) benign(0.086) TCGA-HU-A4H5-01 20 61143624 61143624 G A C20orf166 5'Flank 0.20 TCGA-HU-A4H5-01 20 62559705 62559705 G C DNAJC5 Missense_Mutation p.D3H 0.21 tolerated(0.1) benign(0.03) TCGA-HU-A4H5-01 21 11039021 11039021 C T BAGE2 RNA 0.03 TCGA-HU-A4H5-01 21 17172100 17172100 A G USP25 Missense_Mutation p.R194G 0.52 deleterious(0) benign(0.415) TCGA-HU-A4H5-01 22 20126835 20126835 C T ZDHHC8 Nonsense_Mutation p.R75* 0.14 TCGA-HU-A4H5-01 22 24056478 24056478 G A KB-1572G7.2 RNA 0.79 TCGA-HU-A4H5-01 22 26849268 26849268 C T HPS4 Silent p.Q686Q 0.17 TCGA-HU-A4H5-01 22 26995521 26995521 C T CRYBB1 Missense_Mutation p.R231H 0.81 deleterious(0.02) probably_damaging(0.965) TCGA-HU-A4H5-01 22 40045825 40045825 G A CACNA1I Silent p.T629T 0.16 TCGA-HU-A4H5-01 22 51018797 51018797 G A CHKB Silent p.D242D 0.74 TCGA-HU-A4H5-01 22 51142343 51142343 C T SHANK3 Silent p.Y572Y 0.71 TCGA-HU-A4H5-01 2 108488641 108488641 G A RGPD4 Missense_Mutation p.R1394H 0.10 deleterious(0.03) probably_damaging(0.922) TCGA-HU-A4H5-01 2 109432434 109432434 T A CCDC138 Missense_Mutation p.V360D 0.21 deleterious(0.01) possibly_damaging(0.683) TCGA-HU-A4H5-01 2 111408206 111408206 A C BUB1 Missense_Mutation p.I707S 0.38 tolerated(0.46) benign(0.003) TCGA-HU-A4H5-01 2 11716623 11716623 C T GREB1 Missense_Mutation p.T200I 0.19 tolerated(0.17) benign(0.068) TCGA-HU-A4H5-01 2 131487562 131487563 TT - GPR148 Frame_Shift_Del p.F280Lfs*13 0.09 TCGA-HU-A4H5-01 2 152108058 152108058 G C RBM43 Missense_Mutation p.P146A 0.16 tolerated(0.23) benign(0.013) TCGA-HU-A4H5-01 2 165947259 165947259 G A SCN3A Missense_Mutation p.P1802S 0.57 deleterious(0.04) probably_damaging(0.999) TCGA-HU-A4H5-01 2 173832034 173832034 T A RAPGEF4 Missense_Mutation p.F289Y 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-HU-A4H5-01 2 174104139 174104139 G T MLTK Missense_Mutation p.G425V 0.62 tolerated(0.33) benign(0) TCGA-HU-A4H5-01 2 176947082 176947082 T A EVX2 Missense_Mutation p.S175C 0.19 tolerated(0.06) benign(0.012) TCGA-HU-A4H5-01 2 190924970 190924970 T A MSTN Missense_Mutation p.I189F 0.15 deleterious(0) possibly_damaging(0.752) TCGA-HU-A4H5-01 2 198495934 198495934 G C RFTN2 Missense_Mutation p.N243K 0.16 tolerated(0.55) benign(0.004) TCGA-HU-A4H5-01 2 201822831 201822831 A G ORC2 Silent p.L6L 0.19 TCGA-HU-A4H5-01 2 207172799 207172799 G T ZDBF2 Nonsense_Mutation p.E1183* 0.19 TCGA-HU-A4H5-01 2 208725964 208725964 G C PLEKHM3 Missense_Mutation p.P658R 0.17 deleterious(0.01) probably_damaging(0.993) TCGA-HU-A4H5-01 2 21234023 21234023 G A APOB Missense_Mutation p.T1906I 0.60 benign(0.109) TCGA-HU-A4H5-01 2 219677108 219677108 G A CYP27A1 Missense_Mutation p.D204N 0.14 tolerated(0.16) benign(0.148) TCGA-HU-A4H5-01 2 225651752 225651752 G A DOCK10 Missense_Mutation p.A1881V 0.26 deleterious(0.05) possibly_damaging(0.887) TCGA-HU-A4H5-01 2 227896984 227896984 C A COL4A4 Missense_Mutation p.D1196Y 0.30 unknown(0) TCGA-HU-A4H5-01 2 31593300 31593300 C T XDH Missense_Mutation p.C634Y 0.28 tolerated(0.58) benign(0.285) TCGA-HU-A4H5-01 2 33002969 33002969 C G TTC27 Silent p.L567L 0.16 TCGA-HU-A4H5-01 2 61483553 61483553 A C USP34 Missense_Mutation p.S2063A 0.48 deleterious(0.01) probably_damaging(0.998) TCGA-HU-A4H5-01 2 86371621 86371621 C G IMMT Missense_Mutation p.E683Q 0.28 tolerated(0.06) possibly_damaging(0.723) TCGA-HU-A4H5-01 2 99651877 99651877 T A TSGA10 Missense_Mutation p.K477M 0.16 deleterious(0) probably_damaging(0.98) TCGA-HU-A4H5-01 2 99977640 99977640 C G EIF5B Silent p.T92T 0.35 TCGA-HU-A4H5-01 3 121305471 121305471 C A ARGFX 3'UTR 0.11 TCGA-HU-A4H5-01 3 121418664 121418664 T G GOLGB1 Missense_Mutation p.S530R 0.39 benign(0.003) TCGA-HU-A4H5-01 3 126214935 126214935 C A UROC1 Missense_Mutation p.K545N 0.53 deleterious(0.01) possibly_damaging(0.905) TCGA-HU-A4H5-01 3 142133030 142133030 G T XRN1 Missense_Mutation p.L514I 0.42 deleterious(0.05) probably_damaging(0.999) TCGA-HU-A4H5-01 3 146173129 146173129 C T PLSCR2 Missense_Mutation p.R146K 0.45 deleterious(0.01) probably_damaging(0.919) TCGA-HU-A4H5-01 3 180704741 180704741 G T DNAJC19 Missense_Mutation p.L67I 0.21 deleterious(0) probably_damaging(0.998) TCGA-HU-A4H5-01 3 183778213 183778213 C T HTR3C 3'UTR 0.52 TCGA-HU-A4H5-01 3 192992921 192992921 G A ATP13A5 Silent p.N1189N 0.19 TCGA-HU-A4H5-01 3 33134422 33134422 G A TMPPE Silent p.F422F 0.29 TCGA-HU-A4H5-01 3 41266100 41266100 T C CTNNB1 Missense_Mutation p.S33P 0.46 deleterious(0.01) benign(0.423) TCGA-HU-A4H5-01 3 45943257 45943257 G A CCR9 Missense_Mutation p.R326Q 0.51 tolerated(0.74) benign(0.044) TCGA-HU-A4H5-01 3 48455322 48455322 G C PLXNB1 Missense_Mutation p.D1456E 0.25 tolerated(0.2) benign(0.005) TCGA-HU-A4H5-01 3 48576698 48576698 C G PFKFB4 Missense_Mutation p.A167P 0.39 benign(0.003) TCGA-HU-A4H5-01 3 48956612 48956612 G A ARIH2OS 5'UTR 0.18 TCGA-HU-A4H5-01 3 52526002 52526002 A T NISCH Missense_Mutation p.E1340V 0.30 tolerated(0.14) benign(0.025) TCGA-HU-A4H5-01 3 56330199 56330199 G T ERC2 Missense_Mutation p.L308I 0.33 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H5-01 3 87017820 87017820 G T VGLL3 Missense_Mutation p.T286K 0.25 tolerated(0.06) benign(0.075) TCGA-HU-A4H5-01 3 87017831 87017831 T C VGLL3 Silent p.T282T 0.11 TCGA-HU-A4H5-01 3 89457249 89457249 A T EPHA3 Missense_Mutation p.D577V 0.38 deleterious(0.01) benign(0.003) TCGA-HU-A4H5-01 4 129043260 129043260 G T LARP1B Missense_Mutation p.A481S 0.52 tolerated(0.05) probably_damaging(0.945) TCGA-HU-A4H5-01 4 13543878 13543878 C G NKX3-2 Missense_Mutation p.E247D 0.34 deleterious(0) probably_damaging(0.996) TCGA-HU-A4H5-01 4 156135770 156135770 T C NPY2R Silent p.L227L 0.64 TCGA-HU-A4H5-01 4 187549439 187549439 G C FAT1 Missense_Mutation p.P1560R 0.33 probably_damaging(1) TCGA-HU-A4H5-01 4 49052744 49052744 G C CWH43 Silent p.L633L 0.12 TCGA-HU-A4H5-01 4 73957880 73957880 G A ANKRD17 Missense_Mutation p.A1822V 0.21 benign(0.001) TCGA-HU-A4H5-01 4 73957892 73957892 A C ANKRD17 Missense_Mutation p.I1818R 0.20 benign(0.001) TCGA-HU-A4H5-01 4 83763493 83763493 G T SEC31A Missense_Mutation p.S923Y 0.53 tolerated(0.09) possibly_damaging(0.474) TCGA-HU-A4H5-01 5 102433117 102433117 A T GIN1 Missense_Mutation p.H303Q 0.24 tolerated(0.36) benign(0.001) TCGA-HU-A4H5-01 5 1076859 1076859 C G SLC12A7 Missense_Mutation p.E566D 0.16 deleterious(0.01) probably_damaging(0.923) TCGA-HU-A4H5-01 5 121739486 121739486 A C SNCAIP Splice_Site p.X20_splice 0.36 TCGA-HU-A4H5-01 5 137774865 137774865 G A REEP2 5'UTR 0.17 TCGA-HU-A4H5-01 5 140167155 140167155 C T PCDHA1 Missense_Mutation p.A427V 0.23 deleterious_low_confidence(0.05) possibly_damaging(0.57) TCGA-HU-A4H5-01 5 140626809 140626809 A C PCDHB15 Missense_Mutation p.N555H 0.41 deleterious_low_confidence(0) possibly_damaging(0.897) TCGA-HU-A4H5-01 5 140741454 140741454 C T PCDHGB2 Silent p.P584P 0.06 TCGA-HU-A4H5-01 5 148627430 148627430 G A ABLIM3 Missense_Mutation p.R546Q 0.25 tolerated(0.07) probably_damaging(0.928) TCGA-HU-A4H5-01 5 160029611 160029611 C G ATP10B Missense_Mutation p.M1112I 0.22 deleterious(0) possibly_damaging(0.655) TCGA-HU-A4H5-01 5 54327286 54327286 G A GZMK Missense_Mutation p.G153D 0.39 deleterious(0) probably_damaging(1) TCGA-HU-A4H5-01 5 78612029 78612029 C G JMY Missense_Mutation p.L956V 0.50 deleterious(0) probably_damaging(0.998) TCGA-HU-A4H5-01 6 149983002 149983002 C A LATS1 Missense_Mutation p.D1086Y 0.10 deleterious(0) probably_damaging(0.982) TCGA-HU-A4H5-01 6 152653023 152653023 G A SYNE1 Missense_Mutation p.S4266F 0.19 probably_damaging(0.926) TCGA-HU-A4H5-01 6 153073373 153073373 T A VIP Missense_Mutation p.S21T 0.15 tolerated(0.21) probably_damaging(0.98) TCGA-HU-A4H5-01 6 158923411 158923411 C A TULP4 Silent p.R906R 0.27 TCGA-HU-A4H5-01 6 26468892 26468892 A C BTN2A1 3'UTR 0.34 TCGA-HU-A4H5-01 6 29574171 29574171 G A GABBR1 Missense_Mutation p.L770F 0.45 deleterious(0.04) probably_damaging(0.917) TCGA-HU-A4H5-01 6 30459040 30459040 C G HLA-E Missense_Mutation p.T246S 0.45 deleterious_low_confidence(0.03) benign(0.023) TCGA-HU-A4H5-01 6 311948 311948 A C DUSP22 Silent p.R42R 0.44 TCGA-HU-A4H5-01 6 31556854 31556854 G T NCR3 Missense_Mutation p.P199Q 0.27 tolerated_low_confidence(0.58) probably_damaging(0.937) TCGA-HU-A4H5-01 6 32148965 32148975 CTGATTCAGTT - AGER Frame_Shift_Del p.E387Vfs*5 0.39 TCGA-HU-A4H5-01 6 32782949 32782949 T A HLA-DOB Missense_Mutation p.K78M 0.31 deleterious(0) probably_damaging(0.942) TCGA-HU-A4H5-01 6 33652701 33652701 G C ITPR3 Missense_Mutation p.G1763A 0.13 deleterious(0) possibly_damaging(0.847) TCGA-HU-A4H5-01 6 35088008 35088022 AAAACACTGCCGGAG - TCP11 In_Frame_Del p.F356_V360del 0.40 TCGA-HU-A4H5-01 6 39902073 39902073 G T MOCS1 Silent p.T28T 0.42 TCGA-HU-A4H5-01 6 49976974 49976974 A G DEFB110 Silent p.N22N 0.30 TCGA-HU-A4H5-01 6 52905948 52905948 C A ICK Silent p.L29L 0.29 TCGA-HU-A4H5-01 6 71571445 71571450 ACGAGA - B3GAT2 In_Frame_Del p.L297_V298del 0.33 TCGA-HU-A4H5-01 6 7574926 7574926 C A DSP Silent p.L778L 0.23 TCGA-HU-A4H5-01 6 84234250 84234250 C T PRSS35 Missense_Mutation p.R364C 0.62 deleterious(0) probably_damaging(1) TCGA-HU-A4H5-01 6 89888464 89888464 G A GABRR1 3'UTR 0.63 TCGA-HU-A4H5-01 6 90661069 90661069 A C BACH2 Silent p.G252G 0.61 TCGA-HU-A4H5-01 7 100859255 100859255 C T PLOD3 Nonsense_Mutation p.W183* 0.11 TCGA-HU-A4H5-01 7 103969641 103969641 C A LHFPL3 Nonsense_Mutation p.Y138* 0.20 TCGA-HU-A4H5-01 7 138566147 138566147 G A KIAA1549 Missense_Mutation p.R1406C 0.75 deleterious(0) probably_damaging(1) TCGA-HU-A4H5-01 7 141478478 141478478 G A TAS2R4 Missense_Mutation p.V64M 0.16 tolerated(0.23) possibly_damaging(0.646) TCGA-HU-A4H5-01 7 142566048 142566048 G T EPHB6 Missense_Mutation p.Q656H 0.20 deleterious(0) possibly_damaging(0.472) TCGA-HU-A4H5-01 7 142573524 142573524 G A TRPV6 Missense_Mutation p.T299I 0.07 deleterious(0) possibly_damaging(0.544) TCGA-HU-A4H5-01 7 143453505 143453505 A G CTAGE6 Missense_Mutation p.L416P 0.09 deleterious(0) benign(0.2) TCGA-HU-A4H5-01 7 147183113 147183113 G A CNTNAP2 Missense_Mutation p.S586N 0.22 deleterious(0.03) benign(0.374) TCGA-HU-A4H5-01 7 148543680 148543680 C A EZH2 Missense_Mutation p.S43I 0.72 tolerated(0.21) benign(0.07) TCGA-HU-A4H5-01 7 149474038 149474038 G C ZNF467 5'Flank 0.18 TCGA-HU-A4H5-01 7 155255080 155255080 A G EN2 Missense_Mutation p.K234E 0.21 deleterious(0) possibly_damaging(0.519) TCGA-HU-A4H5-01 7 18688166 18688166 T C HDAC9 Silent p.L443L 0.39 TCGA-HU-A4H5-01 7 21775375 21775375 G T DNAH11 Missense_Mutation p.V2527L 0.41 benign(0.028) TCGA-HU-A4H5-01 7 44044696 44044696 C T SPDYE1 Intron 0.32 TCGA-HU-A4H5-01 7 4949532 4949532 C T MMD2 Missense_Mutation p.A197T 0.68 deleterious(0) probably_damaging(0.954) TCGA-HU-A4H5-01 7 5632769 5632769 C T FSCN1 Missense_Mutation p.R68C 0.41 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H5-01 7 66304608 66304608 G C GTF2IRD1P1 RNA 0.24 TCGA-HU-A4H5-01 7 76254944 76254944 G C POMZP3 Missense_Mutation p.P41R 0.15 deleterious_low_confidence(0) unknown(0) TCGA-HU-A4H5-01 7 76828646 76828646 A G FGL2 Silent p.H155H 0.58 TCGA-HU-A4H5-01 7 82545735 82545735 G C PCLO Missense_Mutation p.P3856R 0.23 unknown(0) TCGA-HU-A4H5-01 7 82585418 82585418 T G PCLO Silent p.T1617T 0.23 TCGA-HU-A4H5-01 7 92763387 92763387 C T SAMD9L Missense_Mutation p.R633K 0.20 tolerated(0.09) benign(0.106) TCGA-HU-A4H5-01 7 98256551 98256551 C A NPTX2 Silent p.G321G 0.20 TCGA-HU-A4H5-01 8 110487423 110487423 T C PKHD1L1 Silent p.N2894N 0.24 TCGA-HU-A4H5-01 8 124027654 124027654 G C DERL1 3'UTR 0.16 TCGA-HU-A4H5-01 8 124221738 124221738 C A FAM83A 3'UTR 0.30 TCGA-HU-A4H5-01 8 125015451 125015472 AAGAAGTCAGCTGAATCAGCTG - FER1L6 Frame_Shift_Del p.S524Tfs*32 0.37 TCGA-HU-A4H5-01 8 125499620 125499620 A G RNF139 Missense_Mutation p.Y577C 0.39 deleterious(0) probably_damaging(0.998) TCGA-HU-A4H5-01 8 131146567 131146567 C A ASAP1 Missense_Mutation p.A398S 0.22 deleterious(0.01) benign(0.008) TCGA-HU-A4H5-01 8 144943893 144943893 C G EPPK1 Missense_Mutation p.A1177P 0.23 benign(0.36) TCGA-HU-A4H5-01 8 21560414 21560414 T A GFRA2 Missense_Mutation p.Q374L 0.34 tolerated(0.3) benign(0.001) TCGA-HU-A4H5-01 8 21905563 21905563 G A FGF17 Missense_Mutation p.A152T 0.22 deleterious(0.01) probably_damaging(0.985) TCGA-HU-A4H5-01 8 24774588 24774588 G T NEFM Missense_Mutation p.G407V 0.20 deleterious(0) unknown(0) TCGA-HU-A4H5-01 8 26237328 26237328 C G BNIP3L 5'Flank 0.42 TCGA-HU-A4H5-01 8 56436707 56436707 G A XKR4 Missense_Mutation p.C625Y 0.12 deleterious(0.02) possibly_damaging(0.556) TCGA-HU-A4H5-01 8 59750777 59750787 TCTGGGGCTCA - TOX Frame_Shift_Del p.N259Kfs*12 0.23 TCGA-HU-A4H5-01 8 8234613 8234613 C T SGK223 Missense_Mutation p.A436T 0.31 benign(0.007) TCGA-HU-A4H5-01 8 97157138 97157138 G A GDF6 Missense_Mutation p.R341C 0.38 deleterious(0) probably_damaging(0.973) TCGA-HU-A4H5-01 9 139658879 139658879 T A LCN15 Missense_Mutation p.E21V 0.66 deleterious(0) benign(0.4) TCGA-HU-A4H5-01 9 139755124 139755124 G A MAMDC4 3'UTR 0.12 TCGA-HU-A4H5-01 9 139912242 139912242 C A ABCA2 Missense_Mutation p.K736N 0.73 deleterious(0) possibly_damaging(0.856) TCGA-HU-A4H5-01 9 140468751 140468751 G - DPH7 Frame_Shift_Del p.R184Gfs*37 0.29 TCGA-HU-A4H5-01 9 35720037 35720037 A G TLN1 Missense_Mutation p.L488P 0.30 tolerated(0.07) possibly_damaging(0.71) TCGA-HU-A4H5-01 9 36102209 36102209 C T RECK Missense_Mutation p.P473S 0.39 tolerated(0.29) benign(0.021) TCGA-HU-A4H5-01 9 7169838 7169838 A T KDM4C Missense_Mutation p.E981V 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-HU-A4H5-01 X 101138838 101138838 G C ZMAT1 Missense_Mutation p.L521V 0.29 tolerated(0.06) benign(0.045) TCGA-HU-A4H5-01 X 102864295 102864295 G A TCEAL3 Silent p.P101P 0.85 TCGA-HU-A4H5-01 X 117744266 117744266 A T DOCK11 Missense_Mutation p.Y994F 0.32 tolerated(0.46) benign(0.009) TCGA-HU-A4H5-01 X 134481436 134481436 G A ZNF449 Intron 0.52 TCGA-HU-A4H5-01 X 134711259 134711259 A T DDX26B Missense_Mutation p.T639S 0.13 tolerated(0.86) possibly_damaging(0.899) TCGA-HU-A4H5-01 X 135861601 135861601 A T ARHGEF6 Missense_Mutation p.L74Q 0.82 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-HU-A4H5-01 X 15342846 15342846 T A PIGA Missense_Mutation p.I377F 0.77 tolerated(1) benign(0.001) TCGA-HU-A4H5-01 X 153717161 153717161 C T SLC10A3 Nonsense_Mutation p.W40* 0.39 TCGA-HU-A4H5-01 X 154020488 154020488 C T MPP1 Missense_Mutation p.A59T 0.45 tolerated(0.16) benign(0.001) TCGA-HU-A4H5-01 X 154282921 154282921 G C FUNDC2 Missense_Mutation p.G182R 0.86 deleterious(0.03) possibly_damaging(0.71) TCGA-HU-A4H5-01 X 34962700 34962700 C T FAM47B Silent p.D584D 0.73 TCGA-HU-A4H5-01 X 35820338 35820338 C T MAGEB16 Nonsense_Mutation p.R9* 0.45 TCGA-HU-A4H5-01 X 70618460 70618460 A G TAF1 Missense_Mutation p.E1240G 0.61 deleterious(0) probably_damaging(0.987) TCGA-HU-A4H5-01 X 72667553 72667553 G C CDX4 Missense_Mutation p.S155T 0.26 tolerated(0.33) probably_damaging(0.982) TCGA-HU-A4H5-01 X 85969556 85969556 G T DACH2 Missense_Mutation p.D313Y 0.73 deleterious(0) probably_damaging(0.977) TCGA-HU-A4H6-01 10 118084492 118084492 C T CCDC172 5'UTR 0.25 TCGA-HU-A4H6-01 10 127429072 127429072 A C EDRF1 Silent p.G674G 0.11 TCGA-HU-A4H6-01 10 134006210 134006210 C T DPYSL4 Silent p.D59D 0.07 TCGA-HU-A4H6-01 10 13717017 13717017 G A FRMD4A Missense_Mutation p.S382L 0.07 deleterious(0.03) benign(0.377) TCGA-HU-A4H6-01 10 3151643 3151643 C T PFKP Missense_Mutation p.R354C 0.10 deleterious(0.03) possibly_damaging(0.851) TCGA-HU-A4H6-01 10 33496543 33496543 G T NRP1 Silent p.G572G 0.11 TCGA-HU-A4H6-01 10 91162567 91162567 G A IFIT1 Missense_Mutation p.A179T 0.12 tolerated(1) benign(0.001) TCGA-HU-A4H6-01 11 101762246 101762246 G C ANGPTL5 Missense_Mutation p.R311G 0.14 tolerated(0.33) benign(0.206) TCGA-HU-A4H6-01 11 116706562 116706562 C A APOA1 Missense_Mutation p.A256S 0.18 tolerated(0.41) benign(0.131) TCGA-HU-A4H6-01 11 118452182 118452182 C T ARCN1 Silent p.N75N 0.23 TCGA-HU-A4H6-01 11 124619657 124619657 T C VSIG2 Missense_Mutation p.N178S 0.05 tolerated(0.84) benign(0.012) TCGA-HU-A4H6-01 11 5566092 5566092 A G OR52H1 Missense_Mutation p.L221P 0.21 deleterious(0) probably_damaging(0.991) TCGA-HU-A4H6-01 11 57076652 57076652 G C TNKS1BP1 Missense_Mutation p.S1178C 0.05 deleterious(0.01) possibly_damaging(0.847) TCGA-HU-A4H6-01 11 62290003 62290003 G A AHNAK Silent p.D3962D 0.13 TCGA-HU-A4H6-01 11 62300832 62300832 G A AHNAK Nonsense_Mutation p.Q353* 0.12 TCGA-HU-A4H6-01 11 66133938 66133938 C T SLC29A2 Silent p.K277K 0.12 TCGA-HU-A4H6-01 11 7670766 7670766 G T PPFIBP2 Missense_Mutation p.D668Y 0.11 deleterious(0) probably_damaging(1) TCGA-HU-A4H6-01 11 88027276 88027276 G A CTSC Silent p.G430G 0.08 TCGA-HU-A4H6-01 11 89768743 89768743 C T TRIM49C Missense_Mutation p.R122W 0.04 deleterious(0.04) benign(0.318) TCGA-HU-A4H6-01 11 92714934 92714934 A C MTNR1B Missense_Mutation p.E182A 0.13 deleterious(0.03) benign(0.013) TCGA-HU-A4H6-01 12 109293196 109293196 G A DAO Missense_Mutation p.R286H 0.18 deleterious(0) probably_damaging(0.987) TCGA-HU-A4H6-01 12 118405989 118405989 G C KSR2 Missense_Mutation p.C24W 0.14 deleterious(0.02) benign(0.001) TCGA-HU-A4H6-01 12 1882101 1882101 G A ADIPOR2 Missense_Mutation p.E89K 0.18 deleterious(0.02) possibly_damaging(0.735) TCGA-HU-A4H6-01 12 56641296 56641296 C T ANKRD52 Missense_Mutation p.R722H 0.24 tolerated(0.54) benign(0.011) TCGA-HU-A4H6-01 12 71158529 71158529 G A PTPRR Silent p.N129N 0.09 TCGA-HU-A4H6-01 12 78400648 78400648 C T NAV3 Missense_Mutation p.P444S 0.15 tolerated(0.92) benign(0.016) TCGA-HU-A4H6-01 13 20038658 20038658 G A TPTE2 Missense_Mutation p.R227C 0.06 deleterious(0.01) benign(0.102) TCGA-HU-A4H6-01 13 32360537 32360537 C T RXFP2 Missense_Mutation p.T316M 0.08 tolerated(0.51) benign(0) TCGA-HU-A4H6-01 13 33261280 33261280 C T PDS5B Missense_Mutation p.R405C 0.09 deleterious(0) probably_damaging(1) TCGA-HU-A4H6-01 13 36402445 36402445 C T DCLK1 Splice_Site p.X410_splice 0.22 TCGA-HU-A4H6-01 14 52174910 52174910 C T FRMD6 Nonsense_Mutation p.R225* 0.11 TCGA-HU-A4H6-01 14 88904504 88904504 C T SPATA7 Missense_Mutation p.T513I 0.06 deleterious(0.01) possibly_damaging(0.543) TCGA-HU-A4H6-01 15 101833364 101833364 G A SNRPA1 Silent p.P32P 0.10 TCGA-HU-A4H6-01 15 41813089 41813089 T A RPAP1 Missense_Mutation p.T1099S 0.07 tolerated(1) benign(0.293) TCGA-HU-A4H6-01 15 57458600 57458600 G T TCF12 Missense_Mutation p.G109V 0.16 deleterious(0.01) probably_damaging(0.971) TCGA-HU-A4H6-01 15 79215402 79215402 C T CTSH Missense_Mutation p.G289R 0.15 deleterious(0) probably_damaging(1) TCGA-HU-A4H6-01 16 1259298 1259298 G A CACNA1H Silent p.P1210P 0.31 TCGA-HU-A4H6-01 16 15931818 15931818 C T MYH11 Missense_Mutation p.E98K 0.18 probably_damaging(0.998) TCGA-HU-A4H6-01 16 2331217 2331217 G A ABCA3 Silent p.Y1390Y 0.13 TCGA-HU-A4H6-01 16 30096288 30096288 G A PPP4C Missense_Mutation p.E277K 0.09 deleterious(0) possibly_damaging(0.499) TCGA-HU-A4H6-01 16 69782198 69782198 G A NOB1 Missense_Mutation p.A254V 0.16 deleterious(0) possibly_damaging(0.509) TCGA-HU-A4H6-01 16 83781812 83781812 C T CDH13 Silent p.V593V 0.05 TCGA-HU-A4H6-01 16 855788 855788 C T PRR25 Missense_Mutation p.R116C 0.09 tolerated_low_confidence(0.16) probably_damaging(0.942) TCGA-HU-A4H6-01 16 87970053 87970053 A G CA5A Silent p.L2L 0.04 TCGA-HU-A4H6-01 17 10424716 10424716 G A MYH2 Missense_Mutation p.R1903C 0.12 deleterious(0) probably_damaging(0.982) TCGA-HU-A4H6-01 17 36486359 36486359 C T GPR179 Silent p.R1031R 0.27 TCGA-HU-A4H6-01 17 42636388 42636388 C A FZD2 Silent p.I444I 0.05 TCGA-HU-A4H6-01 17 43044868 43044868 G A C1QL1 Silent p.R183R 0.17 TCGA-HU-A4H6-01 17 48559708 48559708 C G RSAD1 Missense_Mutation p.A244G 0.28 tolerated(0.24) benign(0.066) TCGA-HU-A4H6-01 19 17405147 17405147 C A ABHD8 Missense_Mutation p.G367C 0.12 deleterious(0) probably_damaging(1) TCGA-HU-A4H6-01 19 21991525 21991525 G A ZNF43 Silent p.P438P 0.10 TCGA-HU-A4H6-01 19 2280863 2280863 G A C19orf35 Missense_Mutation p.T23M 0.18 deleterious(0.01) probably_damaging(0.966) TCGA-HU-A4H6-01 19 30505944 30505944 T C URI1 Missense_Mutation p.F526L 0.15 deleterious(0) possibly_damaging(0.694) TCGA-HU-A4H6-01 19 37647180 37647180 G A CTC-454I21.3 Silent p.N38N 0.09 TCGA-HU-A4H6-01 19 37976146 37976146 C T ZNF570 3'UTR 0.10 TCGA-HU-A4H6-01 19 38956931 38956931 G A RYR1 Missense_Mutation p.R1024H 0.26 benign(0.121) TCGA-HU-A4H6-01 19 49655303 49655303 A G HRC Missense_Mutation p.C662R 0.20 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H6-01 19 54867999 54868000 - G LAIR1 Frame_Shift_Ins p.R198Qfs*14 0.10 TCGA-HU-A4H6-01 19 55264031 55264031 A G KIR2DL3 3'UTR 0.08 TCGA-HU-A4H6-01 19 56133315 56133315 G C ZNF784 Missense_Mutation p.D258E 0.26 tolerated(0.14) benign(0.325) TCGA-HU-A4H6-01 19 58469962 58469962 G A C19orf18 3'UTR 0.24 TCGA-HU-A4H6-01 19 58928643 58928643 G A ZNF584 Missense_Mutation p.R253H 0.07 tolerated(0.44) probably_damaging(1) TCGA-HU-A4H6-01 1 103474067 103474067 C T COL11A1 Silent p.G545G 0.06 TCGA-HU-A4H6-01 1 152882254 152882254 G T IVL Splice_Site 0.07 TCGA-HU-A4H6-01 1 154313404 154313404 C T ATP8B2 Missense_Mutation p.T403M 0.11 tolerated(0.1) probably_damaging(0.999) TCGA-HU-A4H6-01 1 16375656 16375656 G A CLCNKB Missense_Mutation p.V233I 0.11 deleterious(0.05) possibly_damaging(0.708) TCGA-HU-A4H6-01 1 166819614 166819614 T A POGK Missense_Mutation p.C600S 0.09 tolerated(0.49) benign(0) TCGA-HU-A4H6-01 1 170508603 170508603 G A GORAB Missense_Mutation p.S130N 0.11 tolerated(0.25) benign(0.013) TCGA-HU-A4H6-01 1 171083421 171083421 G A FMO3 Missense_Mutation p.V368M 0.06 tolerated(0.05) possibly_damaging(0.702) TCGA-HU-A4H6-01 1 175355235 175355235 G A TNR Silent p.Y570Y 0.07 TCGA-HU-A4H6-01 1 19666004 19666004 G T CAPZB 3'UTR 0.18 TCGA-HU-A4H6-01 1 198721391 198721391 A C PTPRC Missense_Mutation p.Q1074P 0.09 deleterious(0.02) benign(0.445) TCGA-HU-A4H6-01 1 231488616 231488616 G A SPRTN Missense_Mutation p.V327I 0.08 tolerated(0.13) benign(0.037) TCGA-HU-A4H6-01 1 247769302 247769302 C T OR2G3 Missense_Mutation p.R139W 0.06 deleterious(0.05) benign(0.022) TCGA-HU-A4H6-01 1 248637551 248637551 A C OR2T3 Missense_Mutation p.K300N 0.09 deleterious(0.03) possibly_damaging(0.617) TCGA-HU-A4H6-01 1 33246768 33246768 T C YARS Intron 0.08 TCGA-HU-A4H6-01 1 44071064 44071064 C T PTPRF Silent p.D1113D 0.13 TCGA-HU-A4H6-01 1 47501734 47501734 C T CYP4X1 Silent p.I222I 0.08 TCGA-HU-A4H6-01 1 6314738 6314738 G A GPR153 Silent p.F76F 0.16 TCGA-HU-A4H6-01 1 76397900 76397900 A T ASB17 Missense_Mutation p.I26N 0.11 deleterious_low_confidence(0) possibly_damaging(0.781) TCGA-HU-A4H6-01 20 30584971 30584971 G A XKR7 Missense_Mutation p.R484Q 0.13 tolerated(0.09) probably_damaging(0.943) TCGA-HU-A4H6-01 20 62168672 62168672 G A PTK6 5'UTR 0.17 TCGA-HU-A4H6-01 20 644735 644735 C T SCRT2 Silent p.S168S 0.17 TCGA-HU-A4H6-01 21 43411786 43411786 C T ZBTB21 Missense_Mutation p.E807K 0.27 tolerated(0.07) benign(0.386) TCGA-HU-A4H6-01 22 17071982 17071982 T G CCT8L2 Missense_Mutation p.N487H 0.06 deleterious(0) probably_damaging(0.983) TCGA-HU-A4H6-01 22 29924124 29924124 G A THOC5 Missense_Mutation p.R337C 0.10 deleterious(0) possibly_damaging(0.523) TCGA-HU-A4H6-01 22 36962410 36962410 G A CACNG2 Silent p.F142F 0.10 TCGA-HU-A4H6-01 22 50648639 50648639 C T SELO Silent p.A323A 0.09 TCGA-HU-A4H6-01 2 119600593 119600593 C T EN1 Missense_Mutation p.G367D 0.09 deleterious(0.03) benign(0.355) TCGA-HU-A4H6-01 2 161133833 161133833 G A RBMS1 Missense_Mutation p.T375M 0.07 deleterious(0.01) possibly_damaging(0.512) TCGA-HU-A4H6-01 2 166618440 166618440 T A GALNT3 Missense_Mutation p.E271D 0.07 tolerated(0.62) benign(0.021) TCGA-HU-A4H6-01 2 196573489 196573489 T G SLC39A10 Missense_Mutation p.L499R 0.14 deleterious(0) probably_damaging(1) TCGA-HU-A4H6-01 2 198540173 198540173 C T RFTN2 Missense_Mutation p.G4R 0.09 deleterious(0) probably_damaging(0.997) TCGA-HU-A4H6-01 2 219529554 219529554 C G RNF25 Missense_Mutation p.E237Q 0.13 deleterious(0.04) benign(0.043) TCGA-HU-A4H6-01 2 33952560 33952560 C T AC009499.1 Intron 0.20 TCGA-HU-A4H6-01 2 42282140 42282140 A G PKDCC Missense_Mutation p.D365G 0.08 deleterious(0.04) benign(0.008) TCGA-HU-A4H6-01 2 54482767 54482767 C T TSPYL6 Silent p.A174A 0.07 TCGA-HU-A4H6-01 2 60687922 60687922 C T BCL11A Missense_Mutation p.G709R 0.11 deleterious(0) possibly_damaging(0.738) TCGA-HU-A4H6-01 2 98341619 98341619 C T ZAP70 Missense_Mutation p.T156M 0.14 deleterious(0.01) probably_damaging(0.978) TCGA-HU-A4H6-01 3 166958565 166958565 A C ZBBX 3'UTR 0.22 TCGA-HU-A4H6-01 3 21552505 21552505 G A ZNF385D Missense_Mutation p.A96V 0.11 deleterious(0.02) possibly_damaging(0.898) TCGA-HU-A4H6-01 3 37512598 37512598 A G ITGA9 Missense_Mutation p.R96G 0.06 tolerated(0.12) benign(0.231) TCGA-HU-A4H6-01 3 38181925 38181925 C T MYD88 Silent p.S183S 0.10 TCGA-HU-A4H6-01 3 42244190 42244190 T C TRAK1 Missense_Mutation p.F564L 0.06 tolerated(0.56) benign(0.133) TCGA-HU-A4H6-01 3 44541745 44541745 A G ZNF852 Missense_Mutation p.I175T 0.12 tolerated(0.45) benign(0.073) TCGA-HU-A4H6-01 3 49836305 49836305 C T CDHR4 Missense_Mutation p.R150Q 0.16 tolerated(0.37) benign(0.009) TCGA-HU-A4H6-01 3 52404605 52404605 G A DNAH1 Missense_Mutation p.R2124H 0.18 probably_damaging(0.975) TCGA-HU-A4H6-01 4 121616233 121616233 C T PRDM5 3'UTR 0.07 TCGA-HU-A4H6-01 4 138449920 138449920 T C PCDH18 Missense_Mutation p.S848G 0.06 deleterious(0.04) probably_damaging(0.935) TCGA-HU-A4H6-01 4 138452081 138452081 C T PCDH18 Missense_Mutation p.D388N 0.09 deleterious(0) probably_damaging(1) TCGA-HU-A4H6-01 4 3215685 3215685 G T HTT Missense_Mutation p.A2259S 0.19 benign(0.334) TCGA-HU-A4H6-01 4 5170125 5170125 C T STK32B Missense_Mutation p.R70W 0.12 deleterious(0) probably_damaging(1) TCGA-HU-A4H6-01 4 88732540 88732540 A G IBSP Silent p.T144T 0.07 TCGA-HU-A4H6-01 4 90857350 90857351 AT - MMRN1 Frame_Shift_Del p.M841Efs*18 0.08 TCGA-HU-A4H6-01 5 118500266 118500266 G A DMXL1 Missense_Mutation p.M1589I 0.16 deleterious(0.01) benign(0.285) TCGA-HU-A4H6-01 5 1260613 1260613 A G TERT Silent p.C982C 0.05 TCGA-HU-A4H6-01 5 140174841 140174841 C T PCDHA2 Missense_Mutation p.R98W 0.17 deleterious_low_confidence(0.02) benign(0.354) TCGA-HU-A4H6-01 5 140188818 140188818 G A PCDHA4 Silent p.A682A 0.09 TCGA-HU-A4H6-01 5 140559001 140559001 C T PCDHB8 Silent p.R462R 0.11 TCGA-HU-A4H6-01 5 140626263 140626263 C T PCDHB15 Nonsense_Mutation p.R373* 0.13 TCGA-HU-A4H6-01 5 145439671 145439671 C T SH3RF2 Missense_Mutation p.L600F 0.18 deleterious(0.03) benign(0.027) TCGA-HU-A4H6-01 5 149901309 149901309 G A NDST1 Missense_Mutation p.G165S 0.08 tolerated(0.09) possibly_damaging(0.571) TCGA-HU-A4H6-01 5 156766134 156766134 A G CYFIP2 Missense_Mutation p.S793G 0.12 tolerated(0.11) benign(0.014) TCGA-HU-A4H6-01 5 158250237 158250237 C T EBF1 Missense_Mutation p.R242Q 0.21 deleterious(0.01) probably_damaging(0.99) TCGA-HU-A4H6-01 5 80497154 80497154 C T RASGRF2 Silent p.F933F 0.05 TCGA-HU-A4H6-01 6 129722454 129722454 G A LAMA2 Missense_Mutation p.R1844H 0.27 tolerated(0.13) benign(0.009) TCGA-HU-A4H6-01 6 152650951 152650951 C T SYNE1 Missense_Mutation p.E4957K 0.06 probably_damaging(0.997) TCGA-HU-A4H6-01 6 25850092 25850092 G A SLC17A3 Silent p.C404C 0.29 TCGA-HU-A4H6-01 6 29408592 29408592 C T OR10C1 Missense_Mutation p.P267L 0.11 tolerated(0.19) benign(0.012) TCGA-HU-A4H6-01 6 34008342 34008342 C T GRM4 Missense_Mutation p.R451Q 0.11 tolerated(0.17) probably_damaging(0.999) TCGA-HU-A4H6-01 6 41196170 41196170 C A TREML4 Missense_Mutation p.A2D 0.19 deleterious_low_confidence(0) benign(0.068) TCGA-HU-A4H6-01 6 6167728 6167728 T G F13A1 Missense_Mutation p.K624T 0.07 tolerated(0.19) probably_damaging(0.933) TCGA-HU-A4H6-01 7 121731803 121731803 A C AASS Missense_Mutation p.V657G 0.09 deleterious(0.05) benign(0.11) TCGA-HU-A4H6-01 7 143013337 143013337 G T CLCN1 Missense_Mutation p.G11V 0.14 tolerated_low_confidence(0.08) unknown(0) TCGA-HU-A4H6-01 7 151133409 151133409 G A CRYGN Silent p.H91H 0.15 TCGA-HU-A4H6-01 7 70885982 70885982 G A WBSCR17 Missense_Mutation p.V285M 0.13 deleterious(0) possibly_damaging(0.826) TCGA-HU-A4H6-01 7 80374379 80374379 G T SEMA3C Missense_Mutation p.A696E 0.38 deleterious(0.01) benign(0.133) TCGA-HU-A4H6-01 8 144776021 144776021 C T ZNF707 Missense_Mutation p.T146M 0.09 tolerated(0.1) benign(0.051) TCGA-HU-A4H6-01 8 1645408 1645408 C T DLGAP2 Silent p.D884D 0.09 TCGA-HU-A4H6-01 8 49833868 49833868 G A SNAI2 5'UTR 0.22 TCGA-HU-A4H6-01 8 68930087 68930087 T C PREX2 Silent p.L50L 0.08 TCGA-HU-A4H6-01 8 74893861 74893861 A G TMEM70 3'UTR 0.09 TCGA-HU-A4H6-01 9 35799621 35799621 T C NPR2 Silent p.L294L 0.07 TCGA-HU-A4H6-01 9 92002361 92002361 C T SEMA4D Missense_Mutation p.V424M 0.13 deleterious(0) probably_damaging(0.932) TCGA-HU-A4H6-01 9 96259788 96259788 C T FAM120A Silent p.D280D 0.13 TCGA-HU-A4H6-01 X 154743877 154743877 G A TMLHE Silent p.N136N 0.05 TCGA-HU-A4H6-01 X 155227302 155227302 G A IL9R 5'UTR 0.15 TCGA-HU-A4H6-01 X 70823670 70823670 C A ACRC Missense_Mutation p.D181E 0.09 unknown(0) TCGA-HU-A4H6-01 X 71349770 71349770 G A RGAG4 Missense_Mutation p.R541C 0.17 tolerated_low_confidence(0.1) unknown(0) TCGA-HU-A4H6-01 X 7811739 7811739 C T VCX Silent p.H101H 0.11 TCGA-HU-A4H8-01 10 100159860 100159860 T C PYROXD2 Missense_Mutation p.Q157R 0.43 tolerated(0.12) benign(0.001) TCGA-HU-A4H8-01 10 101295042 101295042 C T NKX2-3 Missense_Mutation p.P220L 0.44 deleterious(0.03) benign(0.038) TCGA-HU-A4H8-01 10 102248625 102248625 G A SEC31B Missense_Mutation p.A1093V 0.42 deleterious(0) probably_damaging(0.99) TCGA-HU-A4H8-01 10 105349958 105349958 C T NEURL1 Silent p.S518S 0.34 TCGA-HU-A4H8-01 10 105362048 105362048 G A SH3PXD2A Missense_Mutation p.A948V 0.28 tolerated(0.23) probably_damaging(0.998) TCGA-HU-A4H8-01 10 108412225 108412225 G A SORCS1 Missense_Mutation p.P797L 0.41 deleterious(0) probably_damaging(0.929) TCGA-HU-A4H8-01 10 112361549 112361551 GAA - SMC3 In_Frame_Del p.K936del 0.18 TCGA-HU-A4H8-01 10 112641196 112641196 C T PDCD4 Silent p.D83D 0.39 TCGA-HU-A4H8-01 10 116417742 116417742 C T ABLIM1 Missense_Mutation p.R73H 0.28 tolerated_low_confidence(0.64) benign(0.001) TCGA-HU-A4H8-01 10 119001232 119001232 C T SLC18A2 Missense_Mutation p.R10C 0.25 deleterious(0) benign(0.306) TCGA-HU-A4H8-01 10 121212266 121212266 C T GRK5 Silent p.D496D 0.32 TCGA-HU-A4H8-01 10 12279206 12279206 G A CDC123 Missense_Mutation p.R210H 0.30 tolerated(0.33) possibly_damaging(0.505) TCGA-HU-A4H8-01 10 123600666 123600666 A T ATE1 Missense_Mutation p.V363E 0.25 deleterious(0) probably_damaging(0.996) TCGA-HU-A4H8-01 10 123673353 123673353 T - ATE1 Frame_Shift_Del p.M97Cfs*2 0.24 TCGA-HU-A4H8-01 10 124914569 124914569 G A BUB3 Missense_Mutation p.A46T 0.40 tolerated(0.34) benign(0.002) TCGA-HU-A4H8-01 10 127462424 127462424 C T MMP21 Missense_Mutation p.D225N 0.43 deleterious(0) possibly_damaging(0.879) TCGA-HU-A4H8-01 10 127477547 127477547 G A UROS Missense_Mutation p.R230C 0.22 deleterious(0.05) benign(0.034) TCGA-HU-A4H8-01 10 127524804 127524804 C T BCCIP Intron 0.33 TCGA-HU-A4H8-01 10 12940430 12940431 - G CCDC3 Frame_Shift_Ins p.Y267Lfs*25 0.31 TCGA-HU-A4H8-01 10 129537290 129537290 C - FOXI2 3'UTR 0.31 TCGA-HU-A4H8-01 10 129905283 129905283 G A MKI67 Silent p.N1607N 0.29 TCGA-HU-A4H8-01 10 132891537 132891537 C A TCERG1L Missense_Mutation p.R550M 0.24 deleterious(0) probably_damaging(0.997) TCGA-HU-A4H8-01 10 132944790 132944790 G A TCERG1L Missense_Mutation p.R390C 0.33 deleterious(0) probably_damaging(0.994) TCGA-HU-A4H8-01 10 133769241 133769241 C T PPP2R2D Missense_Mutation p.T348M 0.32 deleterious(0.01) benign(0.067) TCGA-HU-A4H8-01 10 134218962 134218962 C T PWWP2B Missense_Mutation p.R320W 0.43 deleterious(0) probably_damaging(0.998) TCGA-HU-A4H8-01 10 135025243 135025243 C T KNDC1 Missense_Mutation p.R1373W 0.39 deleterious(0) probably_damaging(0.96) TCGA-HU-A4H8-01 10 13696452 13696452 G - FRMD4A Frame_Shift_Del p.P1005Qfs*8 0.33 TCGA-HU-A4H8-01 10 17742265 17742265 C T STAM Missense_Mutation p.A300V 0.51 tolerated(1) benign(0) TCGA-HU-A4H8-01 10 18250727 18250727 C A SLC39A12 Nonsense_Mutation p.S160* 0.29 TCGA-HU-A4H8-01 10 18690913 18690913 C T CACNB2 Missense_Mutation p.R92W 0.38 deleterious(0) probably_damaging(0.971) TCGA-HU-A4H8-01 10 25886928 25886928 C - GPR158 Frame_Shift_Del p.P793Qfs*15 0.21 TCGA-HU-A4H8-01 10 298396 298396 C T ZMYND11 Missense_Mutation p.R599C 0.32 deleterious(0) probably_damaging(0.998) TCGA-HU-A4H8-01 10 30316721 30316721 C T KIAA1462 Missense_Mutation p.V786M 0.32 tolerated(0.3) benign(0.157) TCGA-HU-A4H8-01 10 3151664 3151664 G A PFKP Missense_Mutation p.V361M 0.33 deleterious(0) probably_damaging(0.997) TCGA-HU-A4H8-01 10 3172106 3172106 G - PFKP Frame_Shift_Del p.L596Sfs*27 0.25 TCGA-HU-A4H8-01 10 33018277 33018277 A - C10ORF68 Frame_Shift_Del p.K242Rfs*30 0.46 TCGA-HU-A4H8-01 10 35495867 35495867 G A CREM Missense_Mutation p.A215T 0.41 tolerated(1) benign(0.001) TCGA-HU-A4H8-01 10 38407134 38407134 A T ZNF37A Missense_Mutation p.E352V 0.27 deleterious(0) probably_damaging(0.994) TCGA-HU-A4H8-01 10 45938635 45938635 C T ALOX5 Silent p.D474D 0.28 TCGA-HU-A4H8-01 10 46962096 46962096 G A SYT15 Silent p.G380G 0.18 TCGA-HU-A4H8-01 10 47000062 47000062 C T GPRIN2 Silent p.Y394Y 0.15 TCGA-HU-A4H8-01 10 49658466 49658466 C T ARHGAP22 Missense_Mutation p.S585N 0.30 tolerated(0.19) benign(0.341) TCGA-HU-A4H8-01 10 54048574 54048574 A - PRKG1 Frame_Shift_Del p.N601Mfs*5 0.19 TCGA-HU-A4H8-01 10 60128572 60128572 T - UBE2D1 3'UTR 0.27 TCGA-HU-A4H8-01 10 70450889 70450890 - C TET1 Frame_Shift_Ins p.T1912Hfs*12 0.21 TCGA-HU-A4H8-01 10 71883164 71883164 G A AIFM2 Silent p.G97G 0.42 TCGA-HU-A4H8-01 10 72498695 72498695 G A ADAMTS14 Missense_Mutation p.R569Q 0.26 deleterious(0) probably_damaging(1) TCGA-HU-A4H8-01 10 73520497 73520497 A T C10orf54 Intron 0.43 TCGA-HU-A4H8-01 10 73963225 73963225 A C ASCC1 Silent p.T118T 0.35 TCGA-HU-A4H8-01 10 7409683 7409683 C T SFMBT2 Missense_Mutation p.D122N 0.39 deleterious(0) possibly_damaging(0.743) TCGA-HU-A4H8-01 10 74692258 74692258 G A OIT3 Silent p.P538P 0.33 TCGA-HU-A4H8-01 10 75558820 75558820 G A ZSWIM8 Missense_Mutation p.V1413M 0.36 deleterious(0) probably_damaging(0.998) TCGA-HU-A4H8-01 10 7618941 7618941 C T ITIH5 Missense_Mutation p.D485N 0.33 deleterious(0.03) benign(0.422) TCGA-HU-A4H8-01 10 78646919 78646919 A G KCNMA1 3'Flank 0.34 TCGA-HU-A4H8-01 10 78646983 78646983 G A KCNMA1 3'Flank 0.32 TCGA-HU-A4H8-01 10 8097849 8097849 G A GATA3 Silent p.P77P 0.56 TCGA-HU-A4H8-01 10 81050777 81050777 C T ZMIZ1 Missense_Mutation p.A201V 0.23 benign(0.23) TCGA-HU-A4H8-01 10 95155899 95155899 C T MYOF Missense_Mutation p.D473N 0.42 tolerated(0.15) benign(0.004) TCGA-HU-A4H8-01 10 95327000 95327000 G A FFAR4 Missense_Mutation p.V175I 0.28 tolerated(0.55) benign(0.004) TCGA-HU-A4H8-01 10 97816675 97816675 C T CCNJ Silent p.D166D 0.26 TCGA-HU-A4H8-01 10 97818058 97818058 G A CCNJ 3'UTR 0.29 TCGA-HU-A4H8-01 10 99509312 99509312 G A ZFYVE27 Silent p.T211T 0.37 TCGA-HU-A4H8-01 11 1026075 1026075 G A MUC6 Silent p.Y871Y 0.29 TCGA-HU-A4H8-01 11 107799281 107799281 G A RAB39A 5'UTR 0.33 TCGA-HU-A4H8-01 11 108044068 108044069 - T NPAT Frame_Shift_Ins p.S548Kfs*5 0.30 TCGA-HU-A4H8-01 11 108544239 108544239 A - DDX10 Frame_Shift_Del p.T80Hfs*2 0.23 TCGA-HU-A4H8-01 11 1098738 1098738 G A MUC2 Missense_Mutation p.A2370T 0.47 unknown(0) TCGA-HU-A4H8-01 11 111425932 111425932 G A LAYN Missense_Mutation p.G200D 0.41 tolerated(0.09) benign(0.004) TCGA-HU-A4H8-01 11 111784474 111784475 CT - HSPB2 Frame_Shift_Del p.S137Pfs*2 0.28 TCGA-HU-A4H8-01 11 111851488 111851488 G A DIXDC1 Missense_Mutation p.S228N 0.34 tolerated(0.05) probably_damaging(0.997) TCGA-HU-A4H8-01 11 114441770 114441770 T C NXPE4 Missense_Mutation p.S509G 0.36 tolerated(1) benign(0.003) TCGA-HU-A4H8-01 11 117049937 117049937 C T SIDT2 5'UTR 0.26 TCGA-HU-A4H8-01 11 118047235 118047235 A - SCN2B 5'UTR 0.42 TCGA-HU-A4H8-01 11 119029555 119029555 G A ABCG4 Silent p.A451A 0.34 TCGA-HU-A4H8-01 11 119243468 119243468 C A USP2 Missense_Mutation p.K241N 0.30 tolerated(0.08) benign(0.405) TCGA-HU-A4H8-01 11 121475905 121475905 A - SORL1 Frame_Shift_Del p.M1581Cfs*34 0.27 TCGA-HU-A4H8-01 11 122720827 122720827 C T CRTAM Missense_Mutation p.T33M 0.30 tolerated(0.17) benign(0.212) TCGA-HU-A4H8-01 11 124007910 124007910 A T VWA5A Missense_Mutation p.H605L 0.37 tolerated(0.29) benign(0.005) TCGA-HU-A4H8-01 11 124189773 124189773 A - OR8D2 Frame_Shift_Del p.F107Lfs*2 0.16 TCGA-HU-A4H8-01 11 124747920 124747921 - G ROBO3 Frame_Shift_Ins p.E1027Gfs*67 0.36 TCGA-HU-A4H8-01 11 124857645 124857646 - T CCDC15 Frame_Shift_Ins p.L510Ffs*3 0.18 TCGA-HU-A4H8-01 11 1266656 1266656 G A MUC5B Missense_Mutation p.R2849H 0.33 unknown(0) TCGA-HU-A4H8-01 11 128781366 128781366 C T KCNJ5 Silent p.N66N 0.35 TCGA-HU-A4H8-01 11 129830913 129830913 C T PRDM10 5'UTR 0.65 TCGA-HU-A4H8-01 11 133789980 133789980 C T IGSF9B Missense_Mutation p.G1214S 0.34 tolerated_low_confidence(0.43) benign(0.041) TCGA-HU-A4H8-01 11 134073687 134073687 G T NCAPD3 Missense_Mutation p.L444M 0.24 deleterious(0) probably_damaging(0.933) TCGA-HU-A4H8-01 11 17143869 17143869 A C PIK3C2A Silent p.P841P 0.28 TCGA-HU-A4H8-01 11 17522630 17522630 G A USH1C Missense_Mutation p.A783V 0.25 deleterious_low_confidence(0) possibly_damaging(0.64) TCGA-HU-A4H8-01 11 17741783 17741783 A G MYOD1 Missense_Mutation p.N152D 0.33 deleterious(0.02) benign(0.207) TCGA-HU-A4H8-01 11 18548416 18548416 G A TSG101 5'UTR 0.20 TCGA-HU-A4H8-01 11 18765600 18765600 G T PTPN5 Missense_Mutation p.L82I 0.31 deleterious_low_confidence(0.04) benign(0.11) TCGA-HU-A4H8-01 11 19901479 19901479 G A NAV2 Silent p.Q192Q 0.40 TCGA-HU-A4H8-01 11 25004729 25004729 C T LUZP2 Missense_Mutation p.R219C 0.29 deleterious(0) probably_damaging(0.996) TCGA-HU-A4H8-01 11 30033224 30033224 G A KCNA4 Silent p.D334D 0.29 TCGA-HU-A4H8-01 11 33127404 33127404 A - CSTF3 Intron 0.45 TCGA-HU-A4H8-01 11 33792304 33792304 T - FBXO3 Frame_Shift_Del p.K59Nfs*4 0.27 TCGA-HU-A4H8-01 11 3681163 3681163 G A ART1 Silent p.A138A 0.37 TCGA-HU-A4H8-01 11 44957180 44957180 G A TP53I11 Missense_Mutation p.T123M 0.36 deleterious(0) probably_damaging(0.99) TCGA-HU-A4H8-01 11 45948373 45948373 C - GYLTL1B Frame_Shift_Del p.R428Gfs*30 0.23 TCGA-HU-A4H8-01 11 47440673 47440674 CA - PSMC3 Frame_Shift_Del p.V401Gfs*50 0.15 TCGA-HU-A4H8-01 11 47599371 47599371 G T KBTBD4 Missense_Mutation p.L77M 0.42 tolerated(0.2) probably_damaging(0.985) TCGA-HU-A4H8-01 11 47603972 47603972 C T NDUFS3 Silent p.F193F 0.12 TCGA-HU-A4H8-01 11 4843637 4843637 A G OR51F2 Missense_Mutation p.Y341C 0.33 deleterious_low_confidence(0.01) unknown(0) TCGA-HU-A4H8-01 11 5462477 5462477 T C OR51I1 Missense_Mutation p.N90D 0.31 tolerated(0.28) benign(0.006) TCGA-HU-A4H8-01 11 55587822 55587822 C T OR5D18 Silent p.F239F 0.42 TCGA-HU-A4H8-01 11 56229955 56229955 A G OR5M9 Missense_Mutation p.V308A 0.28 tolerated(0.05) benign(0.001) TCGA-HU-A4H8-01 11 56237709 56237709 T - OR5M3 Frame_Shift_Del p.T89Qfs*8 0.12 TCGA-HU-A4H8-01 11 57003530 57003530 G A APLNR Missense_Mutation p.R317C 0.09 deleterious(0) probably_damaging(1) TCGA-HU-A4H8-01 11 59421493 59421493 G A PATL1 Missense_Mutation p.R362C 0.24 deleterious(0) probably_damaging(0.98) TCGA-HU-A4H8-01 11 60235967 60235967 T - MS4A1 3'UTR 0.21 TCGA-HU-A4H8-01 11 60567576 60567576 C T MS4A10 3'UTR 0.33 TCGA-HU-A4H8-01 11 610707 610709 GGA - PHRF1 In_Frame_Del p.E1542del 0.33 TCGA-HU-A4H8-01 11 61895678 61895678 T C INCENP Silent p.C15C 0.35 TCGA-HU-A4H8-01 11 619088 619088 G C CDHR5 Missense_Mutation p.P491A 0.30 tolerated(0.13) benign(0.14) TCGA-HU-A4H8-01 11 64054075 64054075 A G GPR137 Missense_Mutation p.T85A 0.25 deleterious(0.01) possibly_damaging(0.801) TCGA-HU-A4H8-01 11 64572093 64572093 G - MEN1 Frame_Shift_Del p.R521Gfs*43 0.23 TCGA-HU-A4H8-01 11 64701224 64701224 C T PPP2R5B Missense_Mutation p.R468W 0.38 deleterious(0.01) possibly_damaging(0.898) TCGA-HU-A4H8-01 11 64888119 64888119 T - FAU 3'UTR 0.32 TCGA-HU-A4H8-01 11 64972252 64972252 G A CAPN1 Missense_Mutation p.A422T 0.36 deleterious(0) probably_damaging(0.957) TCGA-HU-A4H8-01 11 65268919 65268919 T - MALAT1 RNA 0.22 TCGA-HU-A4H8-01 11 65386337 65386337 C T PCNXL3 Missense_Mutation p.R502C 0.39 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H8-01 11 65765923 65765923 A C EIF1AD 3'UTR 0.38 TCGA-HU-A4H8-01 11 65780296 65780296 G A CST6 Splice_Site p.X81_splice 0.40 TCGA-HU-A4H8-01 11 65784241 65784241 T C CATSPER1 3'UTR 0.36 TCGA-HU-A4H8-01 11 65822672 65822672 G C SF3B2 Silent p.G128G 0.36 TCGA-HU-A4H8-01 11 66082550 66082550 C T CD248 Missense_Mutation p.G650D 0.31 tolerated(0.13) benign(0.143) TCGA-HU-A4H8-01 11 66108714 66108714 C - BRMS1 Frame_Shift_Del p.L108Cfs*22 0.30 TCGA-HU-A4H8-01 11 66136992 66136992 C T SLC29A2 Silent p.A41A 0.38 TCGA-HU-A4H8-01 11 66238753 66238753 C T PELI3 Nonsense_Mutation p.R89* 0.32 TCGA-HU-A4H8-01 11 66238826 66238826 C T PELI3 Missense_Mutation p.T113M 0.39 deleterious(0.01) probably_damaging(0.91) TCGA-HU-A4H8-01 11 66258805 66258805 A G DPP3 Missense_Mutation p.D250G 0.29 deleterious(0) probably_damaging(0.998) TCGA-HU-A4H8-01 11 66306952 66306952 C - ZDHHC24 3'UTR 0.36 TCGA-HU-A4H8-01 11 66460058 66460058 G A SPTBN2 Silent p.R1713R 0.28 TCGA-HU-A4H8-01 11 66461675 66461675 G A SPTBN2 Missense_Mutation p.R1480C 0.33 deleterious(0) probably_damaging(0.998) TCGA-HU-A4H8-01 11 66618613 66618613 C T PC Silent p.T707T 0.47 TCGA-HU-A4H8-01 11 68675696 68675696 G C IGHMBP2 Missense_Mutation p.V114L 0.27 tolerated(0.2) benign(0.02) TCGA-HU-A4H8-01 11 69588116 69588116 C T FGF4 Silent p.S194S 0.33 TCGA-HU-A4H8-01 11 70266592 70266592 T A CTTN Missense_Mutation p.L256M 0.36 deleterious(0.02) probably_damaging(0.958) TCGA-HU-A4H8-01 11 72295262 72295262 C T PDE2A Missense_Mutation p.G545S 0.43 deleterious(0.02) probably_damaging(0.994) TCGA-HU-A4H8-01 11 72600987 72600987 G A FCHSD2 Nonsense_Mutation p.R310* 0.30 TCGA-HU-A4H8-01 11 73809298 73809298 T C C2CD3 Missense_Mutation p.D912G 0.34 deleterious(0.01) probably_damaging(1) TCGA-HU-A4H8-01 11 73811695 73811695 T C C2CD3 Silent p.K869K 0.36 TCGA-HU-A4H8-01 11 74347278 74347278 G A POLD3 Missense_Mutation p.V386I 0.48 deleterious(0.01) possibly_damaging(0.47) TCGA-HU-A4H8-01 11 74705645 74705645 G A NEU3 Silent p.L62L 0.37 TCGA-HU-A4H8-01 11 74800160 74800161 - G OR2AT4 Frame_Shift_Ins p.Q200Pfs*71 0.25 TCGA-HU-A4H8-01 11 76829322 76829322 C T CAPN5 Missense_Mutation p.T364M 0.34 deleterious(0.02) benign(0.104) TCGA-HU-A4H8-01 11 76893012 76893012 C T MYO7A Missense_Mutation p.R974W 0.25 deleterious(0.03) possibly_damaging(0.471) TCGA-HU-A4H8-01 11 77669839 77669839 A G INTS4 Silent p.S250S 0.20 TCGA-HU-A4H8-01 11 82947533 82947533 C A ANKRD42 Missense_Mutation p.P306H 0.43 deleterious(0) probably_damaging(0.987) TCGA-HU-A4H8-01 11 831623 831623 C T EFCAB4A 3'UTR 0.44 TCGA-HU-A4H8-01 11 87032458 87032458 T C TMEM135 3'UTR 0.29 TCGA-HU-A4H8-01 11 88911656 88911656 A T TYR Missense_Mutation p.M179L 0.24 tolerated(0.16) benign(0.1) TCGA-HU-A4H8-01 11 92600035 92600035 G A FAT3 Silent p.T3929T 0.36 TCGA-HU-A4H8-01 11 93844981 93844981 C G HEPHL1 Missense_Mutation p.S1134C 0.36 tolerated_low_confidence(0.14) benign(0.243) TCGA-HU-A4H8-01 12 102043102 102043102 A - MYBPC1 Frame_Shift_Del p.K397Nfs*4 0.34 TCGA-HU-A4H8-01 12 10532363 10532363 G A KLRK1 Silent p.I59I 0.23 TCGA-HU-A4H8-01 12 105535024 105535024 G A KIAA1033 Missense_Mutation p.R596Q 0.29 tolerated(0.22) benign(0.166) TCGA-HU-A4H8-01 12 109509471 109509471 C T USP30 Missense_Mutation p.R179C 0.33 tolerated(0.05) benign(0.064) TCGA-HU-A4H8-01 12 109703279 109703279 G A ACACB Missense_Mutation p.R2400H 0.42 tolerated(0.19) benign(0) TCGA-HU-A4H8-01 12 110902984 110902984 T C GPN3 Silent p.E67E 0.36 TCGA-HU-A4H8-01 12 112323793 112323793 G A MAPKAPK5 Missense_Mutation p.E308K 0.42 tolerated(0.37) benign(0.381) TCGA-HU-A4H8-01 12 112480910 112480910 G A NAA25 Silent p.L786L 0.45 TCGA-HU-A4H8-01 12 113435331 113435331 A - OAS2 Frame_Shift_Del p.I214Sfs*41 0.26 TCGA-HU-A4H8-01 12 113830745 113830745 C A SDS 3'UTR 0.34 TCGA-HU-A4H8-01 12 11420683 11420683 G - PRB3 Frame_Shift_Del p.P167Hfs*153 0.26 TCGA-HU-A4H8-01 12 11420746 11420746 G - PRB3 Frame_Shift_Del p.P146Hfs*174 0.18 TCGA-HU-A4H8-01 12 117660629 117660629 C T NOS1 Missense_Mutation p.R1323Q 0.34 deleterious(0.03) probably_damaging(1) TCGA-HU-A4H8-01 12 117672531 117672531 T A NOS1 Missense_Mutation p.N1059I 0.27 tolerated(0.13) possibly_damaging(0.86) TCGA-HU-A4H8-01 12 119617264 119617264 C T HSPB8 Silent p.P49P 0.22 TCGA-HU-A4H8-01 12 119966530 119966530 C T CCDC60 Missense_Mutation p.A447V 0.30 tolerated(0.26) probably_damaging(0.913) TCGA-HU-A4H8-01 12 121434123 121434123 C T HNF1A Silent p.G338G 0.40 TCGA-HU-A4H8-01 12 123099621 123099621 G A KNTC1 Silent p.L1987L 0.35 TCGA-HU-A4H8-01 12 123687615 123687615 G T MPHOSPH9 Missense_Mutation p.P294H 0.25 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H8-01 12 124856837 124856837 G - NCOR2 Frame_Shift_Del p.A847Rfs*117 0.32 TCGA-HU-A4H8-01 12 129559375 129559375 C T TMEM132D Missense_Mutation p.R782Q 0.36 deleterious(0) probably_damaging(0.998) TCGA-HU-A4H8-01 12 131283100 131283100 T - STX2 Frame_Shift_Del p.A253Lfs*14 0.26 TCGA-HU-A4H8-01 12 131487823 131487823 G T GPR133 Missense_Mutation p.V374L 0.35 tolerated(0.42) benign(0.004) TCGA-HU-A4H8-01 12 132199409 132199409 G T SFSWAP Missense_Mutation p.G144V 0.08 deleterious(0) possibly_damaging(0.836) TCGA-HU-A4H8-01 12 133241895 133241895 G A POLE Missense_Mutation p.R821C 0.38 deleterious(0) probably_damaging(1) TCGA-HU-A4H8-01 12 133360752 133360752 C T GOLGA3 Missense_Mutation p.E1089K 0.25 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H8-01 12 133428223 133428223 C T CHFR Silent p.P503P 0.38 TCGA-HU-A4H8-01 12 15654773 15654773 C T PTPRO Missense_Mutation p.T294M 0.27 deleterious_low_confidence(0) possibly_damaging(0.874) TCGA-HU-A4H8-01 12 16042873 16042873 A G STRAP Missense_Mutation p.D87G 0.37 deleterious(0.01) probably_damaging(0.979) TCGA-HU-A4H8-01 12 19522710 19522711 AT - PLEKHA5 Frame_Shift_Del p.M1280Vfs*10 0.14 TCGA-HU-A4H8-01 12 22218104 22218104 C T CMAS Silent p.G388G 0.39 TCGA-HU-A4H8-01 12 23687109 23687109 G T SOX5 3'UTR 0.32 TCGA-HU-A4H8-01 12 26568380 26568380 C T ITPR2 Missense_Mutation p.V2388I 0.36 deleterious(0) possibly_damaging(0.627) TCGA-HU-A4H8-01 12 2760757 2760757 C - CACNA1C Intron 0.10 TCGA-HU-A4H8-01 12 29689236 29689236 T - TMTC1 Frame_Shift_Del p.K564Rfs*8 0.21 TCGA-HU-A4H8-01 12 2981273 2981273 G A FOXM1 Nonsense_Mutation p.R215* 0.36 TCGA-HU-A4H8-01 12 30863196 30863196 C T CAPRIN2 Silent p.L958L 0.34 TCGA-HU-A4H8-01 12 31585981 31585982 TT - DENND5B Intron 0.62 TCGA-HU-A4H8-01 12 38714014 38714014 C T ALG10B Missense_Mutation p.P141S 0.22 deleterious(0) probably_damaging(1) TCGA-HU-A4H8-01 12 46230646 46230648 GAG - ARID2 In_Frame_Del p.E300del 0.41 TCGA-HU-A4H8-01 12 46758904 46758904 A G SLC38A2 Missense_Mutation p.L211P 0.30 deleterious(0) probably_damaging(0.992) TCGA-HU-A4H8-01 12 4764054 4764054 G A NDUFA9 Missense_Mutation p.R95H 0.21 tolerated(0.08) benign(0.262) TCGA-HU-A4H8-01 12 49420302 49420303 AA - KMT2D Frame_Shift_Del p.F5149Cfs*9 0.30 TCGA-HU-A4H8-01 12 49485071 49485071 G A DHH Silent p.H135H 0.34 TCGA-HU-A4H8-01 12 49729949 49729949 G A C1QL4 Silent p.A104A 0.20 TCGA-HU-A4H8-01 12 51117073 51117073 G A DIP2B Silent p.T1085T 0.35 TCGA-HU-A4H8-01 12 51751183 51751183 C T GALNT6 Missense_Mutation p.G518R 0.31 tolerated(0.13) probably_damaging(0.996) TCGA-HU-A4H8-01 12 52884727 52884727 G A KRT6A Missense_Mutation p.A276V 0.36 deleterious(0.03) benign(0.247) TCGA-HU-A4H8-01 12 52886577 52886578 - G KRT6A Frame_Shift_Ins p.G133Wfs*30 0.20 TCGA-HU-A4H8-01 12 53457771 53457771 C A TENC1 3'UTR 0.30 TCGA-HU-A4H8-01 12 550953 550953 C T CCDC77 Missense_Mutation p.A445V 0.38 tolerated(0.73) benign(0.005) TCGA-HU-A4H8-01 12 55356262 55356262 G A TESPA1 Missense_Mutation p.R474C 0.37 tolerated_low_confidence(0.11) benign(0.004) TCGA-HU-A4H8-01 12 56091499 56091499 A G ITGA7 Silent p.A467A 0.13 TCGA-HU-A4H8-01 12 56346914 56346914 G A DGKA Missense_Mutation p.R678Q 0.26 deleterious(0.01) probably_damaging(1) TCGA-HU-A4H8-01 12 56482607 56482607 C T ERBB3 Missense_Mutation p.T355I 0.33 deleterious(0) probably_damaging(0.998) TCGA-HU-A4H8-01 12 56619283 56619283 G A NABP2 Missense_Mutation p.R69Q 0.28 deleterious(0) probably_damaging(0.998) TCGA-HU-A4H8-01 12 56733791 56733791 G A IL23A Missense_Mutation p.R158H 0.38 deleterious(0.03) probably_damaging(0.999) TCGA-HU-A4H8-01 12 57389178 57389178 C T GPR182 Missense_Mutation p.A62V 0.37 tolerated(0.81) benign(0.145) TCGA-HU-A4H8-01 12 57963431 57963431 C T KIF5A Missense_Mutation p.A361V 0.40 tolerated(0.15) benign(0.045) TCGA-HU-A4H8-01 12 57965968 57965968 T C KIF5A Missense_Mutation p.V496A 0.43 deleterious(0.03) benign(0.115) TCGA-HU-A4H8-01 12 57994645 57994645 G A PIP4K2C Missense_Mutation p.D289N 0.05 deleterious(0) probably_damaging(0.951) TCGA-HU-A4H8-01 12 58007272 58007274 AGA - ARHGEF25 In_Frame_Del p.K195del 0.31 TCGA-HU-A4H8-01 12 59267868 59267868 T A LRIG3 Silent p.P1028P 0.07 TCGA-HU-A4H8-01 12 6571964 6571964 G A VAMP1 3'Flank 0.29 TCGA-HU-A4H8-01 12 6650743 6650743 G A IFFO1 Silent p.S507S 0.30 TCGA-HU-A4H8-01 12 6672657 6672657 G A NOP2 Nonsense_Mutation p.R271* 0.32 TCGA-HU-A4H8-01 12 6682399 6682399 G A CHD4 Missense_Mutation p.R1800C 0.35 deleterious(0) probably_damaging(0.997) TCGA-HU-A4H8-01 12 6691863 6691863 G A CHD4 Nonsense_Mutation p.R1430* 0.25 TCGA-HU-A4H8-01 12 68051469 68051469 G A DYRK2 Missense_Mutation p.R261Q 0.29 tolerated(0.14) probably_damaging(0.992) TCGA-HU-A4H8-01 12 6924043 6924043 G - CD4 Frame_Shift_Del p.K167Rfs*31 0.28 TCGA-HU-A4H8-01 12 7045027 7045028 - C ATN1 Frame_Shift_Ins p.T202Hfs*47 0.24 TCGA-HU-A4H8-01 12 70989964 70989964 C - PTPRB Frame_Shift_Del p.V375Ffs*50 0.18 TCGA-HU-A4H8-01 12 71977724 71977724 T - LGR5 Frame_Shift_Del p.F646Lfs*21 0.10 TCGA-HU-A4H8-01 12 75601598 75601598 G A KCNC2 Missense_Mutation p.P56S 0.36 tolerated_low_confidence(0.63) benign(0.001) TCGA-HU-A4H8-01 12 7586129 7586129 C T CD163L1 Missense_Mutation p.A96T 0.22 tolerated(0.93) benign(0.001) TCGA-HU-A4H8-01 12 75900336 75900336 A C KRR1 Silent p.S149S 0.15 TCGA-HU-A4H8-01 12 8757859 8757859 G A AICDA Missense_Mutation p.R127W 0.28 deleterious(0) probably_damaging(0.976) TCGA-HU-A4H8-01 12 94543038 94543038 G A PLXNC1 Silent p.A97A 0.45 TCGA-HU-A4H8-01 12 94725550 94725550 G A CCDC41 Missense_Mutation p.R545C 0.14 tolerated(0.09) benign(0.035) TCGA-HU-A4H8-01 12 96300224 96300224 C T CCDC38 Missense_Mutation p.D104N 0.27 deleterious(0) probably_damaging(0.98) TCGA-HU-A4H8-01 13 101714451 101714451 C T NALCN Missense_Mutation p.V1542M 0.39 deleterious(0) probably_damaging(0.996) TCGA-HU-A4H8-01 13 103459769 103459769 G A BIVM-ERCC5 Missense_Mutation p.G23D 0.35 tolerated_low_confidence(0.07) probably_damaging(0.982) TCGA-HU-A4H8-01 13 114307279 114307279 G A ATP4B Missense_Mutation p.T155M 0.36 tolerated(0.09) benign(0.143) TCGA-HU-A4H8-01 13 19751183 19751183 C T TUBA3C Missense_Mutation p.A314T 0.29 deleterious_low_confidence(0) probably_damaging(1) TCGA-HU-A4H8-01 13 23908236 23908238 TCT - SACS In_Frame_Del p.E3259del 0.32 TCGA-HU-A4H8-01 13 24876890 24876890 G A SPATA13 Silent p.R1271R 0.38 TCGA-HU-A4H8-01 13 26792713 26792713 C T RNF6 Missense_Mutation p.R75Q 0.24 deleterious(0) probably_damaging(0.944) TCGA-HU-A4H8-01 13 28608309 28608309 C T FLT3 Missense_Mutation p.G583S 0.26 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H8-01 13 28895660 28895660 A T FLT1 Silent p.I1038I 0.38 TCGA-HU-A4H8-01 13 33591206 33591206 C T KL Missense_Mutation p.R210C 0.48 deleterious(0.01) possibly_damaging(0.834) TCGA-HU-A4H8-01 13 35733663 35733663 A - NBEA Frame_Shift_Del p.N1121Mfs*9 0.43 TCGA-HU-A4H8-01 13 36125104 36125104 A - NBEA Frame_Shift_Del p.V2250Lfs*10 0.25 TCGA-HU-A4H8-01 13 53420431 53420431 C T PCDH8 Missense_Mutation p.G714D 0.35 tolerated(0.62) benign(0.119) TCGA-HU-A4H8-01 13 73301659 73301659 C T MZT1 Intron 0.33 TCGA-HU-A4H8-01 13 78475267 78475267 A - EDNRB Frame_Shift_Del p.Y383Ifs*3 0.27 TCGA-HU-A4H8-01 13 78493582 78493582 C A EDNRB Nonsense_Mutation p.G57* 0.43 TCGA-HU-A4H8-01 13 88328753 88328753 G A SLITRK5 Silent p.V370V 0.24 TCGA-HU-A4H8-01 13 88329438 88329438 G A SLITRK5 Missense_Mutation p.A599T 0.34 tolerated(0.32) benign(0.017) TCGA-HU-A4H8-01 13 92002887 92002887 G A MIR17HG RNA 0.36 TCGA-HU-A4H8-01 13 92101090 92101090 C T GPC5 Missense_Mutation p.A80V 0.37 tolerated(0.15) benign(0.163) TCGA-HU-A4H8-01 13 98865614 98865614 G A FARP1 Missense_Mutation p.V40M 0.34 tolerated(0.21) benign(0.002) TCGA-HU-A4H8-01 14 102494016 102494016 G A DYNC1H1 Missense_Mutation p.A3037T 0.28 possibly_damaging(0.517) TCGA-HU-A4H8-01 14 102502908 102502908 A G DYNC1H1 Missense_Mutation p.S3613G 0.42 probably_damaging(1) TCGA-HU-A4H8-01 14 102675067 102675067 C - WDR20 Frame_Shift_Del p.H220Tfs*5 0.27 TCGA-HU-A4H8-01 14 103390134 103390134 G A AMN Missense_Mutation p.A44T 0.35 deleterious(0.04) benign(0.387) TCGA-HU-A4H8-01 14 103440432 103440432 C T CDC42BPB Missense_Mutation p.R521H 0.35 tolerated(0.57) benign(0) TCGA-HU-A4H8-01 14 105397224 105397224 G A PLD4 Missense_Mutation p.R288H 0.37 tolerated(0.06) benign(0.187) TCGA-HU-A4H8-01 14 105412000 105412000 G A AHNAK2 Missense_Mutation p.T3263M 0.19 benign(0.003) TCGA-HU-A4H8-01 14 105412495 105412495 G A AHNAK2 Missense_Mutation p.T3098M 0.25 benign(0.081) TCGA-HU-A4H8-01 14 106311166 106311166 C T IGHD Missense_Mutation p.R133H 0.27 tolerated(0.33) benign(0.237) TCGA-HU-A4H8-01 14 107048918 107048918 C T IGHV3-53 Silent p.G34G 0.19 TCGA-HU-A4H8-01 14 20978876 20978876 A G RNASE10 Silent p.E82E 0.33 TCGA-HU-A4H8-01 14 22409621 22409621 C A TRAV9-2 Missense_Mutation p.F37L 0.38 tolerated(0.75) benign(0.003) TCGA-HU-A4H8-01 14 22573843 22573843 C T TRAV24 Silent p.S21S 0.25 TCGA-HU-A4H8-01 14 23458986 23458986 G A C14orf93 Missense_Mutation p.T350I 0.38 deleterious_low_confidence(0.01) probably_damaging(0.986) TCGA-HU-A4H8-01 14 23518336 23518336 G A CDH24 Silent p.D620D 0.50 TCGA-HU-A4H8-01 14 23884369 23884369 G A MYH7 Silent p.D1798D 0.33 TCGA-HU-A4H8-01 14 24707977 24707977 C T GMPR2 Missense_Mutation p.A365V 0.30 deleterious_low_confidence(0.01) benign(0.152) TCGA-HU-A4H8-01 14 30194878 30194878 G T PRKD1 Missense_Mutation p.F89L 0.09 tolerated(0.13) benign(0.049) TCGA-HU-A4H8-01 14 33015029 33015029 A - AKAP6 Frame_Shift_Del p.R392Efs*14 0.25 TCGA-HU-A4H8-01 14 51467458 51467458 C T TRIM9 Silent p.T469T 0.40 TCGA-HU-A4H8-01 14 51477173 51477173 G A TRIM9 Missense_Mutation p.R361C 0.28 deleterious(0) probably_damaging(0.943) TCGA-HU-A4H8-01 14 51561501 51561501 C T TRIM9 Missense_Mutation p.A53T 0.26 tolerated(0.14) benign(0) TCGA-HU-A4H8-01 14 53513450 53513480 AATCAGTTTTAGGCCATTCATGTCCTTCAAG TCAGTTTTAGGCCATTCATGTCCTTCA DDHD1 3'UTR 0.16 TCGA-HU-A4H8-01 14 55169045 55169045 G A SAMD4A Silent p.T154T 0.37 TCGA-HU-A4H8-01 14 55907244 55907244 G A TBPL2 Missense_Mutation p.P7L 0.41 deleterious_low_confidence(0) possibly_damaging(0.726) TCGA-HU-A4H8-01 14 56101377 56101377 G A KTN1 Splice_Site p.X487_splice 0.48 TCGA-HU-A4H8-01 14 57271049 57271049 G - OTX2 Frame_Shift_Del p.R44Gfs*15 0.27 TCGA-HU-A4H8-01 14 58063406 58063406 T C SLC35F4 Silent p.L70L 0.47 TCGA-HU-A4H8-01 14 58825910 58825911 - A ARID4A Frame_Shift_Ins p.Q641Tfs*6 0.16 TCGA-HU-A4H8-01 14 60938346 60938346 A G C14orf39 Silent p.H145H 0.16 TCGA-HU-A4H8-01 14 64153092 64153092 C T SGPP1 Missense_Mutation p.A353T 0.33 tolerated(0.73) benign(0.001) TCGA-HU-A4H8-01 14 65007663 65007663 C T HSPA2 Silent p.N32N 0.28 TCGA-HU-A4H8-01 14 65250966 65250966 G A SPTB Missense_Mutation p.A1334V 0.35 deleterious(0.03) benign(0.015) TCGA-HU-A4H8-01 14 65406456 65406456 T G GPX2 Missense_Mutation p.N108T 0.47 deleterious(0) probably_damaging(0.957) TCGA-HU-A4H8-01 14 67490373 67490373 G T GPHN Missense_Mutation p.K329N 0.09 tolerated(0.28) benign(0.011) TCGA-HU-A4H8-01 14 73159844 73159844 C - DPF3 Frame_Shift_Del p.D228Mfs*44 0.24 TCGA-HU-A4H8-01 14 73637650 73637650 G A PSEN1 Missense_Mutation p.G78D 0.37 deleterious(0.04) probably_damaging(1) TCGA-HU-A4H8-01 14 73730965 73730965 G A PAPLN Missense_Mutation p.A943T 0.32 tolerated(0.27) possibly_damaging(0.772) TCGA-HU-A4H8-01 14 74454592 74454592 G A ENTPD5 Missense_Mutation p.P72S 0.31 tolerated(0.35) benign(0.019) TCGA-HU-A4H8-01 14 74726453 74726453 G A VSX2 Missense_Mutation p.G243D 0.26 deleterious(0) probably_damaging(0.996) TCGA-HU-A4H8-01 14 74973512 74973512 C T LTBP2 Missense_Mutation p.A1308T 0.44 tolerated(0.26) benign(0.05) TCGA-HU-A4H8-01 14 75558161 75558161 C T NEK9 Missense_Mutation p.G752R 0.20 tolerated_low_confidence(0.32) benign(0.073) TCGA-HU-A4H8-01 14 79433671 79433671 T C NRXN3 Silent p.T593T 0.42 TCGA-HU-A4H8-01 14 79434665 79434665 G A NRXN3 Missense_Mutation p.G667R 0.32 deleterious(0) probably_damaging(0.997) TCGA-HU-A4H8-01 14 80677760 80677760 A - DIO2 Frame_Shift_Del p.F19Sfs*23 0.23 TCGA-HU-A4H8-01 14 90485721 90485721 C T TDP1 Missense_Mutation p.R535C 0.40 deleterious(0) probably_damaging(0.998) TCGA-HU-A4H8-01 14 91739837 91739837 G A CCDC88C Missense_Mutation p.S1740L 0.09 deleterious(0.05) benign(0.018) TCGA-HU-A4H8-01 14 92266680 92266680 G T TC2N Missense_Mutation p.P169H 0.23 tolerated(0.08) benign(0.281) TCGA-HU-A4H8-01 14 94510329 94510329 C T OTUB2 Silent p.R77R 0.32 TCGA-HU-A4H8-01 14 95109963 95109963 C T SERPINA13P RNA 0.30 TCGA-HU-A4H8-01 14 99642456 99642456 G A BCL11B Silent p.H239H 0.20 TCGA-HU-A4H8-01 15 20488875 20488875 G A CHEK2P2 RNA 0.14 TCGA-HU-A4H8-01 15 20644760 20644760 C A HERC2P3 Splice_Site 0.29 TCGA-HU-A4H8-01 15 23006790 23006790 G A NIPA2 Missense_Mutation p.R172C 0.34 deleterious(0) possibly_damaging(0.844) TCGA-HU-A4H8-01 15 25490537 25490537 C T SNORD115-40 3'Flank 0.35 TCGA-HU-A4H8-01 15 28200304 28200305 - T OCA2 Frame_Shift_Ins p.H615Afs*2 0.27 TCGA-HU-A4H8-01 15 28369270 28369270 G A HERC2 Silent p.F4367F 0.26 TCGA-HU-A4H8-01 15 31323347 31323347 A G TRPM1 Missense_Mutation p.L1006P 0.28 deleterious(0) probably_damaging(0.992) TCGA-HU-A4H8-01 15 32404035 32404036 - G CHRNA7 Frame_Shift_Ins p.V126Gfs*20 0.10 TCGA-HU-A4H8-01 15 32460369 32460369 T C CHRNA7 Missense_Mutation p.C436R 0.22 tolerated(0.58) benign(0.065) TCGA-HU-A4H8-01 15 33876610 33876610 G A RYR3 Missense_Mutation p.G530R 0.19 probably_damaging(0.998) TCGA-HU-A4H8-01 15 34645957 34645957 A G NUTM1 Missense_Mutation p.E292G 0.34 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H8-01 15 37110223 37110223 G A CSNK1A1P1 RNA 0.21 TCGA-HU-A4H8-01 15 40094180 40094180 G A GPR176 Missense_Mutation p.A234V 0.30 tolerated(0.1) probably_damaging(0.984) TCGA-HU-A4H8-01 15 42005391 42005391 C T MGA Nonsense_Mutation p.R1043* 0.38 TCGA-HU-A4H8-01 15 42041948 42041948 C T MGA Missense_Mutation p.S2048F 0.28 deleterious_low_confidence(0) benign(0.127) TCGA-HU-A4H8-01 15 43252855 43252855 T - UBR1 Frame_Shift_Del p.N1582Tfs*13 0.23 TCGA-HU-A4H8-01 15 45007824 45007825 - C B2M Frame_Shift_Ins p.T93Hfs*2 0.22 TCGA-HU-A4H8-01 15 48063749 48063749 C T SEMA6D Missense_Mutation p.R997C 0.34 deleterious(0.04) possibly_damaging(0.726) TCGA-HU-A4H8-01 15 48433519 48433519 T C MYEF2 3'UTR 0.29 TCGA-HU-A4H8-01 15 50515313 50515313 C T SLC27A2 Missense_Mutation p.A375V 0.19 tolerated(0.12) benign(0.01) TCGA-HU-A4H8-01 15 50782631 50782631 C T USP8 Missense_Mutation p.R715C 0.37 deleterious(0.02) benign(0.016) TCGA-HU-A4H8-01 15 51291352 51291352 A C AP4E1 Missense_Mutation p.K996N 0.42 tolerated(0.12) benign(0.03) TCGA-HU-A4H8-01 15 52416738 52416738 C T GNB5 Missense_Mutation p.V370I 0.41 tolerated(0.1) benign(0.114) TCGA-HU-A4H8-01 15 59186129 59186129 T - SLTM Frame_Shift_Del p.E514Kfs*8 0.25 TCGA-HU-A4H8-01 15 62182509 62182509 C T VPS13C Missense_Mutation p.D3066N 0.28 deleterious(0) possibly_damaging(0.612) TCGA-HU-A4H8-01 15 63076201 63076201 A G TLN2 Intron 0.30 TCGA-HU-A4H8-01 15 63551829 63551829 G A RAB8B Missense_Mutation p.A140T 0.40 deleterious(0) possibly_damaging(0.83) TCGA-HU-A4H8-01 15 65041646 65041646 G A RBPMS2 Missense_Mutation p.A84V 0.28 deleterious(0.01) probably_damaging(0.992) TCGA-HU-A4H8-01 15 65490415 65490415 G A CILP Missense_Mutation p.R737C 0.30 deleterious(0) probably_damaging(0.997) TCGA-HU-A4H8-01 15 68120209 68120209 C T SKOR1 Silent p.S621S 0.54 TCGA-HU-A4H8-01 15 70959701 70959701 G A UACA Nonsense_Mutation p.Q1108* 0.28 TCGA-HU-A4H8-01 15 72023519 72023519 C T THSD4 Silent p.N531N 0.32 TCGA-HU-A4H8-01 15 72030245 72030245 C T THSD4 Missense_Mutation p.P602L 0.33 deleterious(0) possibly_damaging(0.475) TCGA-HU-A4H8-01 15 73889561 73889561 C A NPTN Missense_Mutation p.G81C 0.29 deleterious(0) probably_damaging(1) TCGA-HU-A4H8-01 15 74883971 74883971 G T ARID3B Missense_Mutation p.Q412H 0.38 tolerated(0.6) possibly_damaging(0.896) TCGA-HU-A4H8-01 15 75093411 75093411 G A CSK Missense_Mutation p.G261R 0.23 deleterious(0.03) possibly_damaging(0.78) TCGA-HU-A4H8-01 15 78777134 78777134 A - IREB2 Frame_Shift_Del p.K483Nfs*60 0.32 TCGA-HU-A4H8-01 15 79092648 79092648 G A ADAMTS7 Silent p.G114G 0.34 TCGA-HU-A4H8-01 15 79750690 79750690 G A KIAA1024 Missense_Mutation p.R734H 0.40 deleterious(0.02) benign(0.062) TCGA-HU-A4H8-01 15 82335714 82335714 G T MEX3B Silent p.S499S 0.30 TCGA-HU-A4H8-01 15 89698699 89698699 G A ABHD2 Missense_Mutation p.A158T 0.31 deleterious(0.01) possibly_damaging(0.734) TCGA-HU-A4H8-01 15 89801983 89801983 G A FANCI Missense_Mutation p.A45T 0.35 tolerated(0.42) benign(0.012) TCGA-HU-A4H8-01 15 93609139 93609139 G - RGMA Intron 0.23 TCGA-HU-A4H8-01 15 99482585 99482585 C T IGF1R Silent p.I1151I 0.31 TCGA-HU-A4H8-01 16 10721460 10721460 G A TEKT5 Missense_Mutation p.R480C 0.41 deleterious(0) probably_damaging(0.993) TCGA-HU-A4H8-01 16 1143669 1143669 G A C1QTNF8 Silent p.S197S 0.25 TCGA-HU-A4H8-01 16 11858938 11858938 C T ZC3H7A Silent p.P597P 0.14 TCGA-HU-A4H8-01 16 1500643 1500643 C T CLCN7 Missense_Mutation p.G491D 0.21 tolerated(0.15) possibly_damaging(0.689) TCGA-HU-A4H8-01 16 15122809 15122809 G A PDXDC1 Missense_Mutation p.A427T 0.32 tolerated(0.43) benign(0.023) TCGA-HU-A4H8-01 16 15788046 15788046 C - NDE1 Frame_Shift_Del p.L245Sfs*113 0.22 TCGA-HU-A4H8-01 16 16162051 16162051 C T ABCC1 Silent p.D572D 0.20 TCGA-HU-A4H8-01 16 1710001 1710001 C T CRAMP1L Missense_Mutation p.R784W 0.42 deleterious(0) probably_damaging(1) TCGA-HU-A4H8-01 16 18584280 18584280 C - RP11-457I16.2 5'Flank 0.26 TCGA-HU-A4H8-01 16 18593772 18593772 G A ABCC6P1 RNA 0.44 TCGA-HU-A4H8-01 16 2004022 2004022 G A RPL3L Missense_Mutation p.T44M 0.15 deleterious(0) probably_damaging(0.992) TCGA-HU-A4H8-01 16 20335195 20335195 C T GP2 Missense_Mutation p.G160R 0.44 deleterious(0.05) benign(0.052) TCGA-HU-A4H8-01 16 21053366 21053366 G A DNAH3 Silent p.L1541L 0.41 TCGA-HU-A4H8-01 16 21327263 21327263 T C CRYM-AS1 RNA 0.22 TCGA-HU-A4H8-01 16 2142541 2142541 C A PKD1 Missense_Mutation p.G3737W 0.27 probably_damaging(0.992) TCGA-HU-A4H8-01 16 2153317 2153317 C T PKD1 Missense_Mutation p.S2914N 0.38 benign(0.012) TCGA-HU-A4H8-01 16 23703620 23703620 G A ERN2 Silent p.C759C 0.36 TCGA-HU-A4H8-01 16 24788376 24788381 CAGCAG - TNRC6A In_Frame_Del p.Q102_Q103del 0.25 TCGA-HU-A4H8-01 16 27078694 27078694 G T C16orf82 RNA 0.39 TCGA-HU-A4H8-01 16 2763683 2763683 C T PRSS27 Silent p.P175P 0.25 TCGA-HU-A4H8-01 16 2821615 2821616 - G TCEB2 Intron 0.29 TCGA-HU-A4H8-01 16 28328881 28328881 C T SBK1 Missense_Mutation p.R57W 0.42 deleterious(0) probably_damaging(0.987) TCGA-HU-A4H8-01 16 28331811 28331811 C T SBK1 Missense_Mutation p.R282C 0.38 deleterious(0) probably_damaging(0.935) TCGA-HU-A4H8-01 16 28898806 28898806 G A ATP2A1 Missense_Mutation p.E231K 0.07 deleterious(0.03) probably_damaging(0.999) TCGA-HU-A4H8-01 16 30535842 30535842 C T ZNF768 Missense_Mutation p.R540H 0.29 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-HU-A4H8-01 16 30566768 30566768 C T ZNF764 Missense_Mutation p.R325H 0.30 deleterious(0.02) probably_damaging(0.986) TCGA-HU-A4H8-01 16 30732093 30732093 G A SRCAP Missense_Mutation p.R1016Q 0.35 unknown(0) TCGA-HU-A4H8-01 16 31050934 31050934 G A STX4 Missense_Mutation p.V259I 0.26 deleterious(0.03) possibly_damaging(0.453) TCGA-HU-A4H8-01 16 31143904 31143904 G A PRSS8 Missense_Mutation p.T184M 0.33 tolerated(0.07) benign(0.329) TCGA-HU-A4H8-01 16 31144063 31144063 C T PRSS8 Missense_Mutation p.A160T 0.11 tolerated(0.07) benign(0.403) TCGA-HU-A4H8-01 16 31196423 31196423 T C FUS Silent p.G229G 0.33 TCGA-HU-A4H8-01 16 31422111 31422111 C - ITGAD Frame_Shift_Del p.R425Afs*50 0.29 TCGA-HU-A4H8-01 16 3170056 3170056 G A ZNF205 Silent p.A465A 0.20 TCGA-HU-A4H8-01 16 4308231 4308231 C T TFAP4 Missense_Mutation p.G281D 0.27 deleterious(0) unknown(0) TCGA-HU-A4H8-01 16 47005467 47005468 AA - DNAJA2 Frame_Shift_Del p.F52Cfs*3 0.24 TCGA-HU-A4H8-01 16 4749151 4749151 G A ANKS3 Silent p.I437I 0.24 TCGA-HU-A4H8-01 16 4949045 4949045 G A PPL Missense_Mutation p.A282V 0.37 tolerated(0.09) benign(0.007) TCGA-HU-A4H8-01 16 5046950 5046950 G A SEC14L5 Missense_Mutation p.R292H 0.44 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H8-01 16 55905570 55905570 C T CES5A Silent p.A157A 0.35 TCGA-HU-A4H8-01 16 57949226 57949226 C A CNGB1 Missense_Mutation p.S744I 0.12 deleterious(0.03) possibly_damaging(0.771) TCGA-HU-A4H8-01 16 66424419 66424419 C T CDH5 Missense_Mutation p.R299W 0.33 deleterious(0.01) possibly_damaging(0.849) TCGA-HU-A4H8-01 16 66436801 66436801 C T CDH5 Missense_Mutation p.A695V 0.29 tolerated(0.32) benign(0.005) TCGA-HU-A4H8-01 16 67178213 67178213 C T C16orf70 Missense_Mutation p.A299V 0.23 deleterious(0.04) benign(0.178) TCGA-HU-A4H8-01 16 67304828 67304828 G A SLC9A5 Silent p.A802A 0.42 TCGA-HU-A4H8-01 16 67709441 67709441 G A GFOD2 Missense_Mutation p.R259C 0.43 tolerated(0.07) possibly_damaging(0.593) TCGA-HU-A4H8-01 16 67709700 67709700 G A GFOD2 Silent p.G172G 0.32 TCGA-HU-A4H8-01 16 67982038 67982038 G A SLC12A4 Silent p.F593F 0.36 TCGA-HU-A4H8-01 16 68330568 68330568 C T SLC7A6 Silent p.S436S 0.12 TCGA-HU-A4H8-01 16 69353359 69353359 A C VPS4A Missense_Mutation p.K178T 0.24 deleterious(0) probably_damaging(0.988) TCGA-HU-A4H8-01 16 70913544 70913544 T C HYDIN Missense_Mutation p.Q3444R 0.11 possibly_damaging(0.607) TCGA-HU-A4H8-01 16 712018 712018 G A WDR90 Missense_Mutation p.G1331D 0.16 tolerated(0.22) benign(0.381) TCGA-HU-A4H8-01 16 72132685 72132685 G A DHX38 Missense_Mutation p.R253Q 0.35 tolerated(0.3) benign(0.034) TCGA-HU-A4H8-01 16 7383075 7383075 C T RBFOX1 Missense_Mutation p.P25S 0.27 tolerated(0.34) benign(0.049) TCGA-HU-A4H8-01 16 74943405 74943405 C A WDR59 Nonsense_Mutation p.G546* 0.50 TCGA-HU-A4H8-01 16 76555095 76555095 C A CNTNAP4 Silent p.T735T 0.33 TCGA-HU-A4H8-01 16 84163781 84163781 G A HSDL1 Missense_Mutation p.P159L 0.35 deleterious(0.05) possibly_damaging(0.841) TCGA-HU-A4H8-01 16 85839345 85839345 G A COX4I1 Missense_Mutation p.R83H 0.09 tolerated(0.25) benign(0.032) TCGA-HU-A4H8-01 16 85839428 85839428 A G COX4I1 Missense_Mutation p.I111V 0.35 tolerated(0.4) benign(0.003) TCGA-HU-A4H8-01 16 86601223 86601223 C T FOXC2 Silent p.T94T 0.27 TCGA-HU-A4H8-01 16 86602288 86602288 C T FOXC2 Silent p.N449N 0.38 TCGA-HU-A4H8-01 16 8722946 8722946 C A METTL22 Missense_Mutation p.P165T 0.33 tolerated(0.72) benign(0.014) TCGA-HU-A4H8-01 16 87636634 87636634 C T JPH3 5'UTR 0.19 TCGA-HU-A4H8-01 16 88066741 88066741 G A BANP Missense_Mutation p.A356T 0.41 tolerated_low_confidence(0.46) benign(0.003) TCGA-HU-A4H8-01 16 89348416 89348416 G A ANKRD11 Missense_Mutation p.R1512C 0.42 benign(0.443) TCGA-HU-A4H8-01 16 90001326 90001326 G A TUBB3 Missense_Mutation p.R156H 0.35 deleterious_low_confidence(0.01) probably_damaging(0.978) TCGA-HU-A4H8-01 16 9857479 9857479 A G GRIN2A Missense_Mutation p.S1308P 0.20 tolerated(1) benign(0.006) TCGA-HU-A4H8-01 17 10348604 10348604 C T MYH4 Missense_Mutation p.V1749I 0.38 tolerated(0.8) benign(0.004) TCGA-HU-A4H8-01 17 10355524 10355524 C T MYH4 Missense_Mutation p.G1158S 0.38 deleterious(0.04) probably_damaging(1) TCGA-HU-A4H8-01 17 10404768 10404768 G A MYH1 Missense_Mutation p.R1133W 0.37 deleterious(0) probably_damaging(0.971) TCGA-HU-A4H8-01 17 1326778 1326778 C T CRK 3'UTR 0.15 TCGA-HU-A4H8-01 17 1518295 1518295 C T SLC43A2 Silent p.A134A 0.20 TCGA-HU-A4H8-01 17 1552944 1552944 G A RILP Missense_Mutation p.A52V 0.43 tolerated(0.1) probably_damaging(0.964) TCGA-HU-A4H8-01 17 16229222 16229222 G T PIGL 3'UTR 0.26 TCGA-HU-A4H8-01 17 17046886 17046886 C - MPRIP Frame_Shift_Del p.P353Qfs*30 0.30 TCGA-HU-A4H8-01 17 17129580 17129580 G T FLCN Silent p.T102T 0.27 TCGA-HU-A4H8-01 17 17394785 17394785 C T MED9 Silent p.C139C 0.31 TCGA-HU-A4H8-01 17 17699712 17699712 C A RAI1 Silent p.T1150T 0.29 TCGA-HU-A4H8-01 17 17700691 17700691 C T RAI1 Missense_Mutation p.P1477S 0.41 tolerated(0.29) benign(0.002) TCGA-HU-A4H8-01 17 18070920 18070920 T C MYO15A Missense_Mutation p.L3322P 0.30 unknown(0) TCGA-HU-A4H8-01 17 19091383 19091383 G A SNORD3A RNA 0.07 TCGA-HU-A4H8-01 17 1928168 1928168 C T RTN4RL1 5'UTR 0.30 TCGA-HU-A4H8-01 17 20108263 20108263 A - SPECC1 Frame_Shift_Del p.N303Tfs*63 0.40 TCGA-HU-A4H8-01 17 20354896 20354896 A G LGALS9B Silent p.D273D 0.32 TCGA-HU-A4H8-01 17 20361677 20361677 G A LGALS9B Missense_Mutation p.T51M 0.18 deleterious(0.01) possibly_damaging(0.52) TCGA-HU-A4H8-01 17 21101601 21101601 C T TMEM11 3'UTR 0.25 TCGA-HU-A4H8-01 17 2318566 2318566 C T AC006435.1 Missense_Mutation p.R29H 0.39 unknown(0) TCGA-HU-A4H8-01 17 26906803 26906803 G T SPAG5 Silent p.T950T 0.26 TCGA-HU-A4H8-01 17 27380010 27380010 G A PIPOX Silent p.R112R 0.39 TCGA-HU-A4H8-01 17 27419968 27419968 G A MYO18A Missense_Mutation p.R1660C 0.09 deleterious(0) probably_damaging(1) TCGA-HU-A4H8-01 17 28417521 28417521 C T EFCAB5 Missense_Mutation p.R1256C 0.28 deleterious(0) probably_damaging(1) TCGA-HU-A4H8-01 17 28548905 28548905 G A SLC6A4 Silent p.N24N 0.40 TCGA-HU-A4H8-01 17 29632034 29632035 - T EVI2B Frame_Shift_Ins p.N198Kfs*4 0.33 TCGA-HU-A4H8-01 17 33482316 33482316 C T UNC45B Missense_Mutation p.A214V 0.36 deleterious(0) benign(0.081) TCGA-HU-A4H8-01 17 34235878 34235878 A C AC015849.16 RNA 0.30 TCGA-HU-A4H8-01 17 34893474 34893474 T - PIGW Frame_Shift_Del p.F176Lfs*8 0.24 TCGA-HU-A4H8-01 17 3493653 3493653 C T SHPK Missense_Mutation p.R213H 0.37 deleterious(0) probably_damaging(0.995) TCGA-HU-A4H8-01 17 3599303 3599303 G A P2RX5 5'UTR 0.41 TCGA-HU-A4H8-01 17 36873726 36873726 G A MLLT6 Missense_Mutation p.G565R 0.34 deleterious(0) unknown(0) TCGA-HU-A4H8-01 17 36920439 36920440 - T PSMB3 3'UTR 0.30 TCGA-HU-A4H8-01 17 36925837 36925837 C T PIP4K2B 3'UTR 0.29 TCGA-HU-A4H8-01 17 37881332 37881332 G A ERBB2 Missense_Mutation p.V842I 0.32 deleterious(0) probably_damaging(0.998) TCGA-HU-A4H8-01 17 38066178 38066178 C T GSDMB Splice_Site p.X136_splice 0.22 TCGA-HU-A4H8-01 17 38185125 38185125 C T MED24 Missense_Mutation p.A455T 0.28 deleterious(0) probably_damaging(1) TCGA-HU-A4H8-01 17 38953394 38953394 G A KRT28 Missense_Mutation p.A277V 0.40 tolerated(0.07) benign(0.176) TCGA-HU-A4H8-01 17 39969327 39969328 - C FKBP10 Frame_Shift_Ins p.L16Pfs*59 0.16 TCGA-HU-A4H8-01 17 40010212 40010212 G A KLHL11 Missense_Mutation p.A636V 0.33 tolerated(0.28) benign(0.298) TCGA-HU-A4H8-01 17 40379600 40379600 C - STAT5B Frame_Shift_Del p.E78Kfs*6 0.27 TCGA-HU-A4H8-01 17 40716142 40716142 C T COASY Silent p.S317S 0.35 TCGA-HU-A4H8-01 17 41001256 41001256 G A AOC2 Missense_Mutation p.R581H 0.31 deleterious(0) benign(0.067) TCGA-HU-A4H8-01 17 42254992 42254992 G A ASB16 Missense_Mutation p.A360T 0.17 deleterious(0.04) possibly_damaging(0.747) TCGA-HU-A4H8-01 17 42327773 42327773 G A SLC4A1 3'UTR 0.21 TCGA-HU-A4H8-01 17 42474962 42474962 G A GPATCH8 Nonsense_Mutation p.Q1495* 0.38 TCGA-HU-A4H8-01 17 42882358 42882358 A G GJC1 Silent p.N276N 0.37 TCGA-HU-A4H8-01 17 43180414 43180414 G A NMT1 Silent p.T363T 0.39 TCGA-HU-A4H8-01 17 43320666 43320666 G A FMNL1 Missense_Mutation p.R731H 0.27 deleterious(0.01) probably_damaging(0.93) TCGA-HU-A4H8-01 17 43345072 43345072 G A MAP3K14-AS1 RNA 0.28 TCGA-HU-A4H8-01 17 43507092 43507092 C A ARHGAP27 5'Flank 0.60 TCGA-HU-A4H8-01 17 4448203 4448204 CT - MYBBP1A Frame_Shift_Del p.S775* 0.23 TCGA-HU-A4H8-01 17 45376795 45376795 C T ITGB3 Silent p.R604R 0.33 TCGA-HU-A4H8-01 17 4646746 4646746 C T ZMYND15 Silent p.R431R 0.29 TCGA-HU-A4H8-01 17 46670890 46670890 A G HOXB5 Missense_Mutation p.M52T 0.25 deleterious(0) benign(0.145) TCGA-HU-A4H8-01 17 4688915 4688915 G A VMO1 Silent p.G117G 0.24 TCGA-HU-A4H8-01 17 47780357 47780357 G A SLC35B1 Missense_Mutation p.T260M 0.35 tolerated(0.29) probably_damaging(0.937) TCGA-HU-A4H8-01 17 47841500 47841500 C T FAM117A 5'UTR 0.48 TCGA-HU-A4H8-01 17 48262760 48262761 - T COL1A1 3'UTR 0.18 TCGA-HU-A4H8-01 17 48264045 48264045 C T COL1A1 Missense_Mutation p.R1257H 0.38 unknown(0) TCGA-HU-A4H8-01 17 48435793 48435793 C T XYLT2 Missense_Mutation p.R723W 0.38 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H8-01 17 4877058 4877058 C A CAMTA2 Missense_Mutation p.G698C 0.38 deleterious(0.04) probably_damaging(1) TCGA-HU-A4H8-01 17 48917623 48917623 C T WFIKKN2 Missense_Mutation p.A325V 0.43 tolerated(0.23) benign(0.002) TCGA-HU-A4H8-01 17 48940334 48940335 - T TOB1 3'UTR 0.29 TCGA-HU-A4H8-01 17 56435161 56435161 C - RNF43 Frame_Shift_Del p.G659Vfs*41 0.44 TCGA-HU-A4H8-01 17 57679970 57679970 G C DHX40 Missense_Mutation p.A632P 0.26 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H8-01 17 58740889 58740889 C T PPM1D Silent p.H598H 0.18 TCGA-HU-A4H8-01 17 59560345 59560345 C - TBX4 Frame_Shift_Del p.P371Lfs*8 0.28 TCGA-HU-A4H8-01 17 60766261 60766261 C T MRC2 Missense_Mutation p.R1092C 0.33 deleterious(0.01) probably_damaging(0.993) TCGA-HU-A4H8-01 17 61611343 61611343 G A KCNH6 Missense_Mutation p.V258M 0.38 deleterious(0.02) benign(0.042) TCGA-HU-A4H8-01 17 62859324 62859324 G A LRRC37A3 Intron 0.58 TCGA-HU-A4H8-01 17 62968913 62968913 A G AMZ2P1 RNA 0.37 TCGA-HU-A4H8-01 17 63010667 63010667 A - GNA13 Frame_Shift_Del p.F281Sfs*6 0.15 TCGA-HU-A4H8-01 17 6367524 6367524 C A PITPNM3 Missense_Mutation p.G708W 0.31 deleterious(0) probably_damaging(0.986) TCGA-HU-A4H8-01 17 67246059 67246059 A - ABCA5 Frame_Shift_Del p.F1584Lfs*27 0.26 TCGA-HU-A4H8-01 17 72340420 72340420 G A KIF19 Missense_Mutation p.R172Q 0.41 deleterious(0) probably_damaging(0.978) TCGA-HU-A4H8-01 17 73000191 73000191 C - CDR2L 3'UTR 0.23 TCGA-HU-A4H8-01 17 73125123 73125123 G A ARMC7 Missense_Mutation p.R196Q 0.38 tolerated_low_confidence(1) benign(0) TCGA-HU-A4H8-01 17 7369878 7369878 G A ZBTB4 Silent p.T81T 0.33 TCGA-HU-A4H8-01 17 73748361 73748361 G A ITGB4 Silent p.A1300A 0.35 TCGA-HU-A4H8-01 17 74036996 74036996 C T SRP68 Missense_Mutation p.A530T 0.27 tolerated(0.39) benign(0.091) TCGA-HU-A4H8-01 17 74094083 74094083 C T EXOC7 Missense_Mutation p.R145H 0.33 tolerated(0.06) benign(0.356) TCGA-HU-A4H8-01 17 74141371 74141371 C A RNF157 Missense_Mutation p.S662I 0.48 deleterious_low_confidence(0.04) benign(0.067) TCGA-HU-A4H8-01 17 74465953 74465953 C T AANAT Silent p.A220A 0.38 TCGA-HU-A4H8-01 17 7466956 7466956 C - SENP3 Frame_Shift_Del p.R190Gfs*11 0.29 TCGA-HU-A4H8-01 17 74865008 74865008 G A MGAT5B 5'Flank 0.62 TCGA-HU-A4H8-01 17 76046871 76046871 G T TNRC6C Missense_Mutation p.K576N 0.33 deleterious(0) probably_damaging(0.998) TCGA-HU-A4H8-01 17 76456073 76456073 G A DNAH17 Missense_Mutation p.T3135I 0.39 possibly_damaging(0.642) TCGA-HU-A4H8-01 17 78327309 78327309 C T RNF213 Intron 0.40 TCGA-HU-A4H8-01 17 78796081 78796081 C T RPTOR Missense_Mutation p.A324V 0.35 deleterious(0) probably_damaging(0.975) TCGA-HU-A4H8-01 17 79287760 79287760 G A TMEM105 Silent p.I27I 0.39 TCGA-HU-A4H8-01 17 7976518 7976518 G A ALOX12B Missense_Mutation p.T625M 0.39 deleterious(0) probably_damaging(0.993) TCGA-HU-A4H8-01 17 7976593 7976593 C T ALOX12B Missense_Mutation p.R600Q 0.36 tolerated(0.41) probably_damaging(0.968) TCGA-HU-A4H8-01 17 79913389 79913389 G A NOTUM Silent p.D340D 0.32 TCGA-HU-A4H8-01 17 8158873 8158873 C T PFAS Silent p.H146H 0.11 TCGA-HU-A4H8-01 17 8273459 8273459 G A KRBA2 Missense_Mutation p.R158C 0.31 tolerated(0.23) benign(0.01) TCGA-HU-A4H8-01 17 8411973 8411973 C T MYH10 Missense_Mutation p.R1038H 0.39 probably_damaging(0.998) TCGA-HU-A4H8-01 17 9873065 9873065 C T GAS7 Missense_Mutation p.A134T 0.31 tolerated(0.75) benign(0.001) TCGA-HU-A4H8-01 17 994924 994924 C T ABR Missense_Mutation p.G171D 0.28 deleterious(0) probably_damaging(0.955) TCGA-HU-A4H8-01 18 12718569 12718569 C T PSMG2 Silent p.G114G 0.35 TCGA-HU-A4H8-01 18 12725599 12725599 A - PSMG2 3'UTR 0.26 TCGA-HU-A4H8-01 18 13826229 13826229 G A MC5R Silent p.T155T 0.34 TCGA-HU-A4H8-01 18 21479349 21479349 G T LAMA3 Missense_Mutation p.R1978S 0.26 benign(0.142) TCGA-HU-A4H8-01 18 22806909 22806909 G T ZNF521 Missense_Mutation p.L325M 0.35 deleterious(0.01) probably_damaging(0.984) TCGA-HU-A4H8-01 18 2601452 2601452 A - NDC80 Frame_Shift_Del p.M480Wfs*7 0.35 TCGA-HU-A4H8-01 18 29218625 29218625 C T B4GALT6 Silent p.A190A 0.27 TCGA-HU-A4H8-01 18 33751036 33751036 G A ELP2 Missense_Mutation p.C811Y 0.24 tolerated(0.07) benign(0.021) TCGA-HU-A4H8-01 18 34320643 34320643 G A FHOD3 Missense_Mutation p.D1026N 0.33 deleterious(0) benign(0.06) TCGA-HU-A4H8-01 18 42532361 42532361 G A SETBP1 Missense_Mutation p.R1019H 0.30 deleterious(0.01) probably_damaging(0.997) TCGA-HU-A4H8-01 18 42643182 42643182 A G SETBP1 Missense_Mutation p.K1437R 0.20 deleterious(0) probably_damaging(0.991) TCGA-HU-A4H8-01 18 43204734 43204734 G A SLC14A2 Silent p.P35P 0.29 TCGA-HU-A4H8-01 18 43205722 43205722 C T SLC14A2 Silent p.D75D 0.32 TCGA-HU-A4H8-01 18 43435571 43435571 G A EPG5 Silent p.G2508G 0.31 TCGA-HU-A4H8-01 18 43459143 43459143 A - EPG5 Frame_Shift_Del p.Y1902Ifs*26 0.21 TCGA-HU-A4H8-01 18 47810449 47810449 G - CXXC1 Frame_Shift_Del p.Q414Sfs*217 0.27 TCGA-HU-A4H8-01 18 56246941 56246941 A - ALPK2 Frame_Shift_Del p.L356Yfs*2 0.28 TCGA-HU-A4H8-01 18 57013284 57013285 - T LMAN1 Splice_Site p.X275_splice 0.25 TCGA-HU-A4H8-01 18 61652327 61652328 - A SERPINB8 Frame_Shift_Ins p.T193Dfs*7 0.29 TCGA-HU-A4H8-01 18 72228119 72228119 C A CNDP1 Missense_Mutation p.P111H 0.31 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H8-01 18 72998924 72998924 A C TSHZ1 Missense_Mutation p.E476A 0.35 tolerated(0.08) benign(0.06) TCGA-HU-A4H8-01 18 74593430 74593430 A - ZNF236 Frame_Shift_Del p.M461* 0.32 TCGA-HU-A4H8-01 18 74639295 74639295 G - ZNF236 Frame_Shift_Del p.E1412Sfs*36 0.26 TCGA-HU-A4H8-01 18 74672689 74672689 C T ZNF236 Missense_Mutation p.A1764V 0.42 deleterious(0.03) possibly_damaging(0.881) TCGA-HU-A4H8-01 18 76755399 76755399 C T SALL3 Silent p.T1136T 0.35 TCGA-HU-A4H8-01 18 77227522 77227522 G A NFATC1 Missense_Mutation p.V665I 0.41 deleterious(0.04) possibly_damaging(0.66) TCGA-HU-A4H8-01 18 77623865 77623865 C T KCNG2 Silent p.R66R 0.51 TCGA-HU-A4H8-01 18 7949201 7949201 C T PTPRM Missense_Mutation p.P229L 0.31 tolerated(0.06) benign(0.201) TCGA-HU-A4H8-01 18 8819028 8819028 G A SOGA2 Missense_Mutation p.R976H 0.34 tolerated(0.29) benign(0.008) TCGA-HU-A4H8-01 19 10395521 10395521 C T ICAM1 Nonsense_Mutation p.Q415* 0.26 TCGA-HU-A4H8-01 19 1081929 1081929 T C HMHA1 Missense_Mutation p.I845T 0.20 deleterious(0) possibly_damaging(0.899) TCGA-HU-A4H8-01 19 11138594 11138594 C T SMARCA4 Missense_Mutation p.A1117V 0.08 possibly_damaging(0.766) TCGA-HU-A4H8-01 19 11143993 11143993 C T SMARCA4 Missense_Mutation p.R1192C 0.46 probably_damaging(1) TCGA-HU-A4H8-01 19 11223968 11223968 C A LDLR Missense_Mutation p.L401I 0.41 deleterious(0.01) possibly_damaging(0.901) TCGA-HU-A4H8-01 19 11686047 11686047 G A ACP5 Silent p.G252G 0.26 TCGA-HU-A4H8-01 19 12244669 12244670 - CA ZNF20 Frame_Shift_Ins p.G111Vfs*82 0.30 TCGA-HU-A4H8-01 19 12296983 12296983 A T ZNF136 Missense_Mutation p.N62I 0.29 tolerated(0.09) benign(0.014) TCGA-HU-A4H8-01 19 12541062 12541062 T - ZNF443 Frame_Shift_Del p.T642Lfs*68 0.10 TCGA-HU-A4H8-01 19 1271433 1271433 G - CIRBP Frame_Shift_Del p.G107Afs*82 0.27 TCGA-HU-A4H8-01 19 12858847 12858848 - G ASNA1 Frame_Shift_Ins p.A328Gfs*90 0.24 TCGA-HU-A4H8-01 19 12920927 12920927 C T RNASEH2A Missense_Mutation p.R152W 0.35 deleterious(0.01) benign(0.029) TCGA-HU-A4H8-01 19 13054718 13054718 C T CALR Silent p.D415D 0.55 TCGA-HU-A4H8-01 19 13368180 13368180 C A CACNA1A Missense_Mutation p.S1525I 0.40 possibly_damaging(0.883) TCGA-HU-A4H8-01 19 13387910 13387910 G A CACNA1A Silent p.G1285G 0.35 TCGA-HU-A4H8-01 19 13616860 13616860 G A CACNA1A Missense_Mutation p.A60V 0.29 possibly_damaging(0.682) TCGA-HU-A4H8-01 19 1390983 1390983 G A NDUFS7 Silent p.P114P 0.35 TCGA-HU-A4H8-01 19 14516664 14516664 G A CD97 Silent p.S578S 0.41 TCGA-HU-A4H8-01 19 14562741 14562741 C - PKN1 Frame_Shift_Del p.F366Sfs*2 0.24 TCGA-HU-A4H8-01 19 15223241 15223241 G A SYDE1 Missense_Mutation p.V555M 0.44 deleterious(0) probably_damaging(1) TCGA-HU-A4H8-01 19 15376438 15376438 G A BRD4 Silent p.G192G 0.39 TCGA-HU-A4H8-01 19 15483836 15483836 G A AKAP8 Silent p.Y229Y 0.17 TCGA-HU-A4H8-01 19 1556759 1556759 C T MEX3D Silent p.T253T 0.34 TCGA-HU-A4H8-01 19 15760964 15760964 G T CYP4F3 Missense_Mutation p.D297Y 0.31 deleterious(0) probably_damaging(0.997) TCGA-HU-A4H8-01 19 16003198 16003198 C T CYP4F2 Missense_Mutation p.R149Q 0.33 deleterious(0.02) benign(0.323) TCGA-HU-A4H8-01 19 16060236 16060236 G A OR10H4 Missense_Mutation p.R140H 0.37 tolerated(0.12) benign(0.002) TCGA-HU-A4H8-01 19 17000816 17000816 C T F2RL3 Missense_Mutation p.P181L 0.54 deleterious(0) probably_damaging(0.997) TCGA-HU-A4H8-01 19 17057980 17057980 G A CPAMD8 Missense_Mutation p.R903C 0.22 deleterious(0.05) probably_damaging(0.931) TCGA-HU-A4H8-01 19 17313014 17313014 C T MYO9B Missense_Mutation p.R1580C 0.26 deleterious(0.01) possibly_damaging(0.841) TCGA-HU-A4H8-01 19 17438570 17438570 G A ANO8 Silent p.S782S 0.06 TCGA-HU-A4H8-01 19 18234816 18234816 C T MAST3 Missense_Mutation p.A205V 0.50 deleterious(0.05) benign(0.029) TCGA-HU-A4H8-01 19 18245637 18245637 C T MAST3 Missense_Mutation p.T543M 0.30 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H8-01 19 1826907 1826907 C T REXO1 Silent p.K627K 0.50 TCGA-HU-A4H8-01 19 1827647 1827647 T - REXO1 Frame_Shift_Del p.T381Pfs*112 0.26 TCGA-HU-A4H8-01 19 1854671 1854671 C A KLF16 Silent p.T182T 0.48 TCGA-HU-A4H8-01 19 18779360 18779360 C T KLHL26 Missense_Mutation p.R385C 0.42 deleterious(0.04) probably_damaging(1) TCGA-HU-A4H8-01 19 18856697 18856697 G T CRTC1 Missense_Mutation p.R119M 0.20 deleterious(0) probably_damaging(0.993) TCGA-HU-A4H8-01 19 19308955 19308955 G A RFXANK Missense_Mutation p.A160T 0.36 deleterious(0.02) probably_damaging(0.998) TCGA-HU-A4H8-01 19 19381909 19381909 C T TM6SF2 Missense_Mutation p.A41T 0.28 tolerated(0.23) benign(0.003) TCGA-HU-A4H8-01 19 19655921 19655921 G A CILP2 Missense_Mutation p.R856H 0.39 deleterious(0) possibly_damaging(0.855) TCGA-HU-A4H8-01 19 19822871 19822871 G A ZNF14 Nonsense_Mutation p.R407* 0.39 TCGA-HU-A4H8-01 19 1986467 1986467 C T BTBD2 3'UTR 0.27 TCGA-HU-A4H8-01 19 2246901 2246901 C T SF3A2 Silent p.A142A 0.30 TCGA-HU-A4H8-01 19 2252349 2252349 G A JSRP1 Silent p.R325R 0.19 TCGA-HU-A4H8-01 19 2280892 2280892 G A C19orf35 Silent p.P13P 0.33 TCGA-HU-A4H8-01 19 23299846 23299846 G A ZNF730 5'UTR 0.33 TCGA-HU-A4H8-01 19 23544220 23544220 C T ZNF91 Missense_Mutation p.E521K 0.18 tolerated(0.68) probably_damaging(0.998) TCGA-HU-A4H8-01 19 24010261 24010261 G A RPSAP58 Missense_Mutation p.A100T 0.30 deleterious(0.01) benign(0.359) TCGA-HU-A4H8-01 19 2916959 2916959 G T ZNF57 Missense_Mutation p.G114C 0.29 tolerated(0.11) benign(0.091) TCGA-HU-A4H8-01 19 30193594 30193594 C - C19orf12 3'UTR 0.25 TCGA-HU-A4H8-01 19 30193641 30193641 G A C19orf12 Missense_Mutation p.A146V 0.35 deleterious(0.02) probably_damaging(0.973) TCGA-HU-A4H8-01 19 31040213 31040213 G A ZNF536 Silent p.P1229P 0.41 TCGA-HU-A4H8-01 19 31769142 31769142 C - TSHZ3 Frame_Shift_Del p.D521Ifs*10 0.25 TCGA-HU-A4H8-01 19 3207221 3207221 C A NCLN Missense_Mutation p.Q509K 0.38 tolerated(0.11) possibly_damaging(0.778) TCGA-HU-A4H8-01 19 35786621 35786621 G A MAG Missense_Mutation p.R51Q 0.35 deleterious(0) probably_damaging(0.998) TCGA-HU-A4H8-01 19 36215931 36215935 CTGGA - KMT2B Frame_Shift_Del p.T1159Kfs*16 0.60 TCGA-HU-A4H8-01 19 36228111 36228111 G A KMT2B Silent p.Q2499Q 0.25 TCGA-HU-A4H8-01 19 36380850 36380850 C T NFKBID Missense_Mutation p.R277H 0.38 deleterious(0) probably_damaging(1) TCGA-HU-A4H8-01 19 36430728 36430728 G A LRFN3 Missense_Mutation p.R134H 0.35 tolerated(0.28) benign(0.32) TCGA-HU-A4H8-01 19 3648643 3648645 GAT - PIP5K1C In_Frame_Del p.I397del 0.34 TCGA-HU-A4H8-01 19 36579994 36579994 G A WDR62 Missense_Mutation p.R608H 0.44 deleterious(0.02) probably_damaging(1) TCGA-HU-A4H8-01 19 38103018 38103018 T - ZNF540 Frame_Shift_Del p.F281Lfs*4 0.28 TCGA-HU-A4H8-01 19 38709609 38709611 TCT - DPF1 In_Frame_Del p.K156del 0.41 TCGA-HU-A4H8-01 19 39229238 39229238 C T CAPN12 Silent p.A260A 0.26 TCGA-HU-A4H8-01 19 39306274 39306274 G A ECH1 Silent p.T322T 0.22 TCGA-HU-A4H8-01 19 39329104 39329104 T C HNRNPL Missense_Mutation p.Q497R 0.29 deleterious(0.02) probably_damaging(0.943) TCGA-HU-A4H8-01 19 39976855 39976855 G A TIMM50 Missense_Mutation p.R277H 0.25 deleterious(0) probably_damaging(0.995) TCGA-HU-A4H8-01 19 4037447 4037447 G A PIAS4 Silent p.P406P 0.24 TCGA-HU-A4H8-01 19 40724061 40724061 A G TTC9B Silent p.Y76Y 0.54 TCGA-HU-A4H8-01 19 40886445 40886445 G A HIPK4 Missense_Mutation p.R485C 0.32 tolerated_low_confidence(0.07) benign(0.004) TCGA-HU-A4H8-01 19 40895662 40895662 G A HIPK4 Missense_Mutation p.R50C 0.39 deleterious(0.01) benign(0.025) TCGA-HU-A4H8-01 19 41183178 41183178 C - NUMBL Frame_Shift_Del p.G230Vfs*94 0.38 TCGA-HU-A4H8-01 19 41522587 41522587 C T CYP2B6 Missense_Mutation p.A444V 0.41 deleterious(0.01) benign(0.019) TCGA-HU-A4H8-01 19 43348583 43348583 G A PSG10P RNA 0.35 TCGA-HU-A4H8-01 19 43585190 43585190 A G PSG2 Silent p.Y91Y 0.05 TCGA-HU-A4H8-01 19 4362734 4362734 C A SH3GL1 Splice_Site p.X243_splice 0.42 TCGA-HU-A4H8-01 19 4446528 4446528 C T UBXN6 Missense_Mutation p.A297T 0.30 deleterious(0.04) benign(0.048) TCGA-HU-A4H8-01 19 45716496 45716496 G - EXOC3L2 Frame_Shift_Del p.P354Lfs*49 0.16 TCGA-HU-A4H8-01 19 46375988 46375988 C - FOXA3 Frame_Shift_Del p.A244Rfs*49 0.33 TCGA-HU-A4H8-01 19 47240136 47240136 C T STRN4 Silent p.S161S 0.10 TCGA-HU-A4H8-01 19 4816246 4816246 C T TICAM1 3'UTR 0.36 TCGA-HU-A4H8-01 19 48846619 48846619 G T TMEM143 Silent p.G218G 0.09 TCGA-HU-A4H8-01 19 49253486 49253486 G A FUT1 Silent p.G351G 0.21 TCGA-HU-A4H8-01 19 49409052 49409052 G A NUCB1 Missense_Mutation p.V96I 0.32 tolerated(0.22) benign(0.172) TCGA-HU-A4H8-01 19 49488801 49488801 G A GYS1 Missense_Mutation p.A247V 0.39 deleterious(0.04) probably_damaging(0.996) TCGA-HU-A4H8-01 19 49514455 49514455 T G RUVBL2 Missense_Mutation p.F297V 0.33 deleterious(0) probably_damaging(0.98) TCGA-HU-A4H8-01 19 49685991 49685991 C T TRPM4 Missense_Mutation p.R474C 0.09 tolerated(0.14) benign(0.004) TCGA-HU-A4H8-01 19 50247622 50247622 G A TSKS Silent p.S409S 0.27 TCGA-HU-A4H8-01 19 50265289 50265289 G A TSKS Missense_Mutation p.P124L 0.38 tolerated(0.08) benign(0.009) TCGA-HU-A4H8-01 19 51170213 51170213 C T SHANK1 Silent p.P1668P 0.53 TCGA-HU-A4H8-01 19 52216788 52216788 C A HAS1 Silent p.A543A 0.45 TCGA-HU-A4H8-01 19 52272458 52272458 T C FPR2 Missense_Mutation p.W183R 0.37 deleterious(0.01) probably_damaging(0.991) TCGA-HU-A4H8-01 19 53657002 53657002 C A ZNF347 5'UTR 0.30 TCGA-HU-A4H8-01 19 53855384 53855384 C T ZNF845 Missense_Mutation p.R486C 0.65 deleterious(0.02) probably_damaging(0.997) TCGA-HU-A4H8-01 19 54177457 54177457 C - MIR498 RNA 0.08 TCGA-HU-A4H8-01 19 54445586 54445586 C G CACNG7 3'UTR 0.31 TCGA-HU-A4H8-01 19 54544249 54544249 G - VSTM1 Frame_Shift_Del p.P226Qfs*9 0.25 TCGA-HU-A4H8-01 19 54849400 54849400 C T LILRA4 Silent p.L154L 0.41 TCGA-HU-A4H8-01 19 55341810 55341810 C T KIR3DL1 3'UTR 0.27 TCGA-HU-A4H8-01 19 55378013 55378013 G A KIR3DL2 Missense_Mutation p.A399T 0.33 tolerated(0.19) benign(0.012) TCGA-HU-A4H8-01 19 55856021 55856021 C T AC020922.1 5'UTR 0.45 TCGA-HU-A4H8-01 19 56203330 56203330 G A EPN1 Missense_Mutation p.A411T 0.20 tolerated(0.11) possibly_damaging(0.723) TCGA-HU-A4H8-01 19 58084689 58084689 A G ZNF416 Missense_Mutation p.Y195H 0.44 tolerated(0.54) benign(0.049) TCGA-HU-A4H8-01 19 58238780 58238780 C T ZNF671 Silent p.A39A 0.84 TCGA-HU-A4H8-01 19 59061548 59061548 T C TRIM28 Missense_Mutation p.I743T 0.29 deleterious(0) probably_damaging(0.944) TCGA-HU-A4H8-01 19 694872 694872 C T PRSS57 Missense_Mutation p.G60R 0.24 deleterious(0) probably_damaging(1) TCGA-HU-A4H8-01 19 7534893 7534893 A G ARHGEF18 Silent p.R1109R 0.36 TCGA-HU-A4H8-01 19 7692180 7692180 G A XAB2 Silent p.R157R 0.22 TCGA-HU-A4H8-01 19 7963908 7963908 C T LRRC8E Silent p.S167S 0.36 TCGA-HU-A4H8-01 19 7987213 7987213 C - SNAPC2 Frame_Shift_Del p.E224Sfs*33 0.24 TCGA-HU-A4H8-01 19 813534 813534 G A LPPR3 Missense_Mutation p.P426L 0.54 deleterious(0) probably_damaging(0.992) TCGA-HU-A4H8-01 19 8666009 8666009 G A ADAMTS10 Missense_Mutation p.R205W 0.34 deleterious(0.03) benign(0.18) TCGA-HU-A4H8-01 19 8953941 8953941 A - MBD3L1 3'UTR 0.43 TCGA-HU-A4H8-01 19 9049263 9049263 A T MUC16 Missense_Mutation p.S10790T 0.34 benign(0.032) TCGA-HU-A4H8-01 19 9059156 9059157 - T MUC16 Frame_Shift_Ins p.N9430Kfs*27 0.32 TCGA-HU-A4H8-01 19 9076020 9076020 T - MUC16 Frame_Shift_Del p.K3809Rfs*30 0.29 TCGA-HU-A4H8-01 1 100195232 100195232 G A FRRS1 Nonsense_Mutation p.R278* 0.16 TCGA-HU-A4H8-01 1 10042384 10042385 - G NMNAT1 Frame_Shift_Ins p.A157Gfs*16 0.23 TCGA-HU-A4H8-01 1 10708045 10708045 C T CASZ1 Missense_Mutation p.A1104T 0.20 tolerated(1) benign(0.006) TCGA-HU-A4H8-01 1 109811556 109811556 G A CELSR2 Missense_Mutation p.R2186H 0.17 tolerated(0.13) benign(0.048) TCGA-HU-A4H8-01 1 110586300 110586300 C T STRIP1 Missense_Mutation p.R370W 0.29 deleterious(0.01) possibly_damaging(0.792) TCGA-HU-A4H8-01 1 111060754 111060754 G A KCNA10 Missense_Mutation p.A219V 0.35 deleterious(0) probably_damaging(0.996) TCGA-HU-A4H8-01 1 11151609 11151609 G A EXOSC10 Missense_Mutation p.P140S 0.20 tolerated(0.08) possibly_damaging(0.725) TCGA-HU-A4H8-01 1 113239384 113239384 G A MOV10 Missense_Mutation p.R705Q 0.37 deleterious(0) probably_damaging(0.998) TCGA-HU-A4H8-01 1 114310974 114310974 G A RSBN1 Missense_Mutation p.R566W 0.26 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H8-01 1 114442915 114442915 C A AP4B1 Missense_Mutation p.S242I 0.30 tolerated(0.12) benign(0.392) TCGA-HU-A4H8-01 1 114523959 114523959 C - OLFML3 Frame_Shift_Del p.Y266Tfs*3 0.28 TCGA-HU-A4H8-01 1 114969847 114969847 G A TRIM33 Missense_Mutation p.R458C 0.38 deleterious(0) probably_damaging(0.974) TCGA-HU-A4H8-01 1 117663484 117663484 C T TRIM45 Missense_Mutation p.D114N 0.30 tolerated(0.23) benign(0.021) TCGA-HU-A4H8-01 1 118165698 118165698 C T FAM46C Missense_Mutation p.R70W 0.36 deleterious(0.01) probably_damaging(0.998) TCGA-HU-A4H8-01 1 119575804 119575804 G A WARS2 Silent p.G271G 0.41 TCGA-HU-A4H8-01 1 120165709 120165709 G A ZNF697 Silent p.S419S 0.33 TCGA-HU-A4H8-01 1 120478152 120478152 C A NOTCH2 Missense_Mutation p.G1200C 0.30 deleterious(0) probably_damaging(1) TCGA-HU-A4H8-01 1 1290110 1290110 G - MXRA8 Frame_Shift_Del p.R301Gfs*107 0.19 TCGA-HU-A4H8-01 1 1309472 1309472 G A AURKAIP1 Missense_Mutation p.R136W 0.34 deleterious(0) probably_damaging(0.994) TCGA-HU-A4H8-01 1 1330912 1330912 C T CCNL2 Intron 0.26 TCGA-HU-A4H8-01 1 13910567 13910567 C T PDPN Silent p.S89S 0.29 TCGA-HU-A4H8-01 1 143744203 143744203 G A RP6-206I17.1 Intron 0.17 TCGA-HU-A4H8-01 1 144826257 144826257 G T NBPF9 Missense_Mutation p.E499D 0.47 deleterious(0.03) possibly_damaging(0.83) TCGA-HU-A4H8-01 1 14925519 14925519 C T KAZN Missense_Mutation p.A9V 0.36 deleterious(0) possibly_damaging(0.75) TCGA-HU-A4H8-01 1 14925623 14925623 G A KAZN Missense_Mutation p.G44S 0.44 tolerated_low_confidence(1) benign(0.001) TCGA-HU-A4H8-01 1 149858090 149858090 C T HIST2H2BE Missense_Mutation p.R34H 0.10 tolerated_low_confidence(0.1) unknown(0) TCGA-HU-A4H8-01 1 150529506 150529506 C T ADAMTSL4 Missense_Mutation p.P614L 0.33 tolerated(0.26) benign(0.002) TCGA-HU-A4H8-01 1 150917624 150917624 G - SETDB1 Intron 0.36 TCGA-HU-A4H8-01 1 150938724 150938725 CT - CERS2 Frame_Shift_Del p.S348Lfs*26 0.25 TCGA-HU-A4H8-01 1 151143409 151143409 C T TMOD4 Missense_Mutation p.R286H 0.22 deleterious(0.04) possibly_damaging(0.505) TCGA-HU-A4H8-01 1 151378254 151378254 C T POGZ Missense_Mutation p.R1086Q 0.35 tolerated(0.24) probably_damaging(0.99) TCGA-HU-A4H8-01 1 151773273 151773273 C T LINGO4 3'UTR 0.24 TCGA-HU-A4H8-01 1 151787739 151787739 G A RORC Missense_Mutation p.P154L 0.41 tolerated(0.09) benign(0.002) TCGA-HU-A4H8-01 1 152281748 152281748 T C FLG Missense_Mutation p.K1872E 0.36 benign(0.292) TCGA-HU-A4H8-01 1 15361377 15361377 G A KAZN Missense_Mutation p.R184H 0.22 tolerated(0.15) benign(0.215) TCGA-HU-A4H8-01 1 153723704 153723704 C T INTS3 Missense_Mutation p.L240F 0.23 deleterious(0.01) possibly_damaging(0.648) TCGA-HU-A4H8-01 1 154145590 154145590 A G TPM3 Silent p.I155I 0.24 TCGA-HU-A4H8-01 1 154932028 154932028 G - PYGO2 Frame_Shift_Del p.Q150Rfs*11 0.20 TCGA-HU-A4H8-01 1 155175055 155175055 C T THBS3 Silent p.Q113Q 0.32 TCGA-HU-A4H8-01 1 156206136 156206136 G A PMF1 Intron 0.33 TCGA-HU-A4H8-01 1 156206232 156206232 G T PMF1 Missense_Mutation p.R154M 0.26 deleterious_low_confidence(0.01) benign(0.143) TCGA-HU-A4H8-01 1 156926334 156926334 T C ARHGEF11 Missense_Mutation p.N517D 0.40 tolerated(0.64) benign(0.04) TCGA-HU-A4H8-01 1 158724836 158724836 C A OR6K6 Silent p.I77I 0.34 TCGA-HU-A4H8-01 1 159846512 159846512 C T CCDC19 Missense_Mutation p.E396K 0.53 deleterious(0) possibly_damaging(0.732) TCGA-HU-A4H8-01 1 161136683 161136683 G A PPOX Missense_Mutation p.A16T 0.43 tolerated(0.42) benign(0.173) TCGA-HU-A4H8-01 1 161495244 161495244 C T HSPA6 Missense_Mutation p.R266C 0.50 deleterious_low_confidence(0.01) probably_damaging(0.995) TCGA-HU-A4H8-01 1 161519720 161519720 G T FCGR3A 5'UTR 0.32 TCGA-HU-A4H8-01 1 16200870 16200870 G A SPEN Intron 0.41 TCGA-HU-A4H8-01 1 16254958 16254959 CT - SPEN Frame_Shift_Del p.Q743Gfs*7 0.24 TCGA-HU-A4H8-01 1 1635564 1635564 G A CDK11A Missense_Mutation p.R570W 0.32 deleterious(0) unknown(0) TCGA-HU-A4H8-01 1 16375585 16375585 G T CLCNKB Intron 0.07 TCGA-HU-A4H8-01 1 16458280 16458280 C T EPHA2 Missense_Mutation p.G804D 0.41 deleterious(0) probably_damaging(1) TCGA-HU-A4H8-01 1 167654689 167654689 C T RCSD1 Missense_Mutation p.P47L 0.37 deleterious(0) probably_damaging(0.916) TCGA-HU-A4H8-01 1 16803434 16803434 C T CROCCP3 RNA 0.40 TCGA-HU-A4H8-01 1 168054942 168054942 C T GPR161 Missense_Mutation p.E493K 0.42 deleterious_low_confidence(0.01) benign(0.407) TCGA-HU-A4H8-01 1 16810917 16810917 G A CROCCP3 RNA 0.41 TCGA-HU-A4H8-01 1 16907915 16907915 C A NBPF1 Missense_Mutation p.R460M 0.04 tolerated(0.09) probably_damaging(0.997) TCGA-HU-A4H8-01 1 169923216 169923216 C T KIFAP3 Missense_Mutation p.D737N 0.32 deleterious(0.01) benign(0.167) TCGA-HU-A4H8-01 1 17085016 17085016 G A MST1L RNA 0.08 TCGA-HU-A4H8-01 1 171173044 171173044 G A FMO2 Missense_Mutation p.R223H 0.39 deleterious(0.02) benign(0.303) TCGA-HU-A4H8-01 1 171501615 171501615 G A PRRC2C Missense_Mutation p.R461H 0.30 unknown(0) TCGA-HU-A4H8-01 1 173454570 173454570 G A PRDX6 Missense_Mutation p.R108Q 0.34 tolerated(0.07) benign(0.332) TCGA-HU-A4H8-01 1 17735444 17735444 C T RCC2 3'UTR 0.16 TCGA-HU-A4H8-01 1 179523813 179523813 C A AXDND1 3'UTR 0.45 TCGA-HU-A4H8-01 1 179561742 179561742 T G TDRD5 5'UTR 0.14 TCGA-HU-A4H8-01 1 180022186 180022186 G A CEP350 Missense_Mutation p.R1625Q 0.22 probably_damaging(0.999) TCGA-HU-A4H8-01 1 180904929 180904929 G A KIAA1614 Silent p.A628A 0.31 TCGA-HU-A4H8-01 1 182026330 182026330 G A ZNF648 Silent p.R272R 0.36 TCGA-HU-A4H8-01 1 182908369 182908370 - T SHCBP1L Frame_Shift_Ins p.Y340Ifs*3 0.21 TCGA-HU-A4H8-01 1 183559420 183559420 C A NCF2 Silent p.L15L 0.32 TCGA-HU-A4H8-01 1 185958749 185958749 G A HMCN1 Missense_Mutation p.A1060T 0.37 probably_damaging(0.998) TCGA-HU-A4H8-01 1 186114581 186114581 G A HMCN1 Silent p.R4771R 0.18 TCGA-HU-A4H8-01 1 186147634 186147634 G T HMCN1 Nonsense_Mutation p.G5344* 0.34 TCGA-HU-A4H8-01 1 186277217 186277217 C A PRG4 Missense_Mutation p.P789H 0.41 unknown(0) TCGA-HU-A4H8-01 1 186282786 186282787 - A TPR 3'UTR 0.49 TCGA-HU-A4H8-01 1 19027168 19027168 G A PAX7 Missense_Mutation p.A270T 0.20 deleterious(0) probably_damaging(1) TCGA-HU-A4H8-01 1 1957177 1957177 G A GABRD Missense_Mutation p.R157Q 0.41 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H8-01 1 196392226 196392226 G C KCNT2 Missense_Mutation p.A380G 0.27 tolerated(0.08) probably_damaging(0.993) TCGA-HU-A4H8-01 1 200843191 200843191 C T GPR25 Silent p.D342D 0.22 TCGA-HU-A4H8-01 1 201013510 201013510 C A CACNA1S Missense_Mutation p.E1581D 0.34 tolerated(0.28) benign(0.177) TCGA-HU-A4H8-01 1 201342488 201342488 G A TNNT2 5'UTR 0.36 TCGA-HU-A4H8-01 1 205030396 205030396 G A CNTN2 Missense_Mutation p.R274H 0.36 deleterious(0) probably_damaging(0.991) TCGA-HU-A4H8-01 1 205779576 205779576 C T SLC41A1 5'UTR 0.35 TCGA-HU-A4H8-01 1 209785458 209785458 G A CAMK1G Missense_Mutation p.A413T 0.28 tolerated_low_confidence(0.63) benign(0) TCGA-HU-A4H8-01 1 21044071 21044071 G A KIF17 Silent p.G43G 0.44 TCGA-HU-A4H8-01 1 21050922 21050922 C T SH2D5 Silent p.R199R 0.47 TCGA-HU-A4H8-01 1 210857408 210857408 G - KCNH1 Frame_Shift_Del p.L729* 0.29 TCGA-HU-A4H8-01 1 211923140 211923141 - T LPGAT1 3'UTR 0.40 TCGA-HU-A4H8-01 1 214178556 214178556 T - PROX1 Frame_Shift_Del p.Y594Ifs*10 0.29 TCGA-HU-A4H8-01 1 214557451 214557451 C T PTPN14 Missense_Mutation p.A583T 0.29 tolerated(0.39) probably_damaging(0.998) TCGA-HU-A4H8-01 1 22172952 22172952 T C HSPG2 Missense_Mutation p.S2769G 0.34 benign(0.045) TCGA-HU-A4H8-01 1 223934727 223934727 G - CAPN2 Frame_Shift_Del p.G198Vfs*20 0.24 TCGA-HU-A4H8-01 1 228400402 228400402 C T OBSCN Silent p.R306R 0.31 TCGA-HU-A4H8-01 1 228412271 228412271 C T OBSCN Missense_Mutation p.T1014M 0.35 benign(0.14) TCGA-HU-A4H8-01 1 228482038 228482038 G T OBSCN Missense_Mutation p.G4202C 0.28 probably_damaging(1) TCGA-HU-A4H8-01 1 229599315 229599315 C T NUP133 Missense_Mutation p.R887H 0.20 tolerated(0.16) probably_damaging(0.962) TCGA-HU-A4H8-01 1 232650124 232650124 C T SIPA1L2 Missense_Mutation p.R321H 0.30 tolerated(0.07) benign(0.017) TCGA-HU-A4H8-01 1 235323946 235323947 - T RBM34 Frame_Shift_Ins p.T82Nfs*5 0.18 TCGA-HU-A4H8-01 1 237617717 237617717 C T RYR2 Missense_Mutation p.A440V 0.43 benign(0) TCGA-HU-A4H8-01 1 237870524 237870524 A G RYR2 Missense_Mutation p.N3286D 0.25 benign(0.24) TCGA-HU-A4H8-01 1 240497412 240497412 G A FMN2 Missense_Mutation p.A1550T 0.34 possibly_damaging(0.877) TCGA-HU-A4H8-01 1 24078404 24078405 AA - TCEB3 Frame_Shift_Del p.N465* 0.24 TCGA-HU-A4H8-01 1 243303329 243303329 G C CEP170 Missense_Mutation p.N1380K 0.26 tolerated(0.09) probably_damaging(0.999) TCGA-HU-A4H8-01 1 243468023 243468023 A - SDCCAG8 Frame_Shift_Del p.K229Nfs*15 0.22 TCGA-HU-A4H8-01 1 245017699 245017699 A G HNRNPU 3'UTR 0.47 TCGA-HU-A4H8-01 1 246755193 246755193 G A CNST Missense_Mutation p.G110E 0.32 deleterious(0.04) probably_damaging(0.964) TCGA-HU-A4H8-01 1 247024553 247024553 T - AHCTF1 Frame_Shift_Del p.K1269Nfs*11 0.23 TCGA-HU-A4H8-01 1 248020689 248020689 G A TRIM58 Silent p.S47S 0.25 TCGA-HU-A4H8-01 1 249142519 249142519 C T ZNF672 Missense_Mutation p.T349M 0.23 deleterious(0.01) probably_damaging(0.993) TCGA-HU-A4H8-01 1 25254203 25254203 C T RUNX3 Missense_Mutation p.V115M 0.24 deleterious(0) probably_damaging(0.998) TCGA-HU-A4H8-01 1 26694122 26694122 G A ZNF683 Missense_Mutation p.T94I 0.10 tolerated(0.05) possibly_damaging(0.733) TCGA-HU-A4H8-01 1 26795419 26795419 A C DHDDS Silent p.R268R 0.23 TCGA-HU-A4H8-01 1 27088699 27088699 G A ARID1A Missense_Mutation p.A770T 0.41 unknown(0) TCGA-HU-A4H8-01 1 27217499 27217499 G T GPATCH3 3'UTR 0.36 TCGA-HU-A4H8-01 1 27620601 27620601 G A WDTC1 Missense_Mutation p.V251I 0.33 tolerated(0.53) benign(0.281) TCGA-HU-A4H8-01 1 27684337 27684337 A T MAP3K6 Silent p.P982P 0.35 TCGA-HU-A4H8-01 1 27709037 27709037 C T CD164L2 Missense_Mutation p.R70H 0.25 tolerated(1) benign(0) TCGA-HU-A4H8-01 1 27876815 27876815 G A AHDC1 Silent p.D604D 0.32 TCGA-HU-A4H8-01 1 31452916 31452916 C T PUM1 Silent p.A449A 0.40 TCGA-HU-A4H8-01 1 31898734 31898734 A C SERINC2 Missense_Mutation p.E204A 0.38 deleterious(0.01) possibly_damaging(0.595) TCGA-HU-A4H8-01 1 32793251 32793251 G T HDAC1 Missense_Mutation p.E203D 0.37 tolerated(0.44) benign(0.002) TCGA-HU-A4H8-01 1 33560306 33560306 T G ADC Missense_Mutation p.F249V 0.33 deleterious(0) probably_damaging(0.945) TCGA-HU-A4H8-01 1 35227680 35227680 C A GJB4 3'UTR 0.33 TCGA-HU-A4H8-01 1 35334691 35334691 C T DLGAP3 Splice_Site p.X667_splice 0.39 TCGA-HU-A4H8-01 1 3768920 3768920 C T CEP104 Missense_Mutation p.G18S 0.33 deleterious(0.02) probably_damaging(0.99) TCGA-HU-A4H8-01 1 38462977 38462977 T - FHL3 3'UTR 0.31 TCGA-HU-A4H8-01 1 39854025 39854025 G A MACF1 Missense_Mutation p.V3109I 0.26 benign(0.04) TCGA-HU-A4H8-01 1 40525076 40525076 G A CAP1 Missense_Mutation p.A20T 0.25 tolerated(0.42) benign(0.023) TCGA-HU-A4H8-01 1 42048868 42048868 G - HIVEP3 Frame_Shift_Del p.P534Lfs*5 0.28 TCGA-HU-A4H8-01 1 43818232 43818232 G A MPL Missense_Mutation p.S566N 0.34 deleterious(0.01) probably_damaging(0.962) TCGA-HU-A4H8-01 1 43916430 43916430 C - SZT2 3'UTR 0.25 TCGA-HU-A4H8-01 1 44442888 44442888 G T ATP6V0B Missense_Mutation p.Q197H 0.39 deleterious(0) probably_damaging(0.98) TCGA-HU-A4H8-01 1 45266542 45266542 G A PLK3 Missense_Mutation p.D81N 0.33 deleterious(0) probably_damaging(0.965) TCGA-HU-A4H8-01 1 45294915 45294915 C T PTCH2 Missense_Mutation p.G429R 0.31 deleterious(0) probably_damaging(1) TCGA-HU-A4H8-01 1 4772068 4772068 G - AJAP1 Frame_Shift_Del p.P48Rfs*105 0.33 TCGA-HU-A4H8-01 1 53446175 53446175 C T SCP2 Silent p.N311N 0.39 TCGA-HU-A4H8-01 1 53458985 53458985 T C SCP2 Intron 0.39 TCGA-HU-A4H8-01 1 61921003 61921003 G A NFIA 3'UTR 0.38 TCGA-HU-A4H8-01 1 6257785 6257786 TT - RPL22 Frame_Shift_Del p.K15Efs*9 0.32 TCGA-HU-A4H8-01 1 62960061 62960061 C T DOCK7 Missense_Mutation p.R1670Q 0.20 deleterious(0.02) benign(0.388) TCGA-HU-A4H8-01 1 63299733 63299733 G A ATG4C Missense_Mutation p.V320M 0.29 deleterious(0.01) possibly_damaging(0.73) TCGA-HU-A4H8-01 1 64644147 64644147 C T ROR1 Missense_Mutation p.P808L 0.07 deleterious(0.01) benign(0.085) TCGA-HU-A4H8-01 1 6556577 6556577 G A PLEKHG5 Silent p.C42C 0.35 TCGA-HU-A4H8-01 1 65851489 65851489 C - DNAJC6 Frame_Shift_Del p.F301Sfs*31 0.18 TCGA-HU-A4H8-01 1 65874405 65874405 G A DNAJC6 Missense_Mutation p.R858Q 0.41 deleterious(0) possibly_damaging(0.611) TCGA-HU-A4H8-01 1 6653565 6653567 AGA - KLHL21 In_Frame_Del p.F551del 0.34 TCGA-HU-A4H8-01 1 67396009 67396009 C T MIER1 Intron 0.39 TCGA-HU-A4H8-01 1 86961302 86961302 G A CLCA1 Missense_Mutation p.R686Q 0.33 tolerated(0.72) benign(0) TCGA-HU-A4H8-01 1 89206848 89206848 A - PKN2 Frame_Shift_Del p.S78Vfs*5 0.19 TCGA-HU-A4H8-01 1 91405088 91405088 A G ZNF644 Missense_Mutation p.L608S 0.38 deleterious(0.01) probably_damaging(0.964) TCGA-HU-A4H8-01 1 92181821 92181821 A G TGFBR3 Missense_Mutation p.V613A 0.32 deleterious(0.04) probably_damaging(1) TCGA-HU-A4H8-01 20 17581680 17581680 T - DSTN Frame_Shift_Del p.L103Cfs*6 0.26 TCGA-HU-A4H8-01 20 18724832 18724832 G A DTD1 Missense_Mutation p.R189Q 0.21 deleterious_low_confidence(0.02) benign(0.208) TCGA-HU-A4H8-01 20 23066469 23066469 C - CD93 Frame_Shift_Del p.E121Rfs*79 0.62 TCGA-HU-A4H8-01 20 24930099 24930099 C T CST7 5'UTR 0.27 TCGA-HU-A4H8-01 20 2816204 2816204 C - PCED1A Frame_Shift_Del p.C425Afs*11 0.31 TCGA-HU-A4H8-01 20 30584330 30584330 C T XKR7 Silent p.L270L 0.15 TCGA-HU-A4H8-01 20 31604906 31604906 T G BPIFB2 Missense_Mutation p.I192S 0.28 deleterious(0.04) possibly_damaging(0.892) TCGA-HU-A4H8-01 20 32399335 32399336 - C CHMP4B Frame_Shift_Ins p.Q23Pfs*50 0.35 TCGA-HU-A4H8-01 20 33330514 33330514 C T NCOA6 Silent p.Q1182Q 0.42 TCGA-HU-A4H8-01 20 34021704 34021704 C T GDF5 3'UTR 0.22 TCGA-HU-A4H8-01 20 36766704 36766704 G A TGM2 Missense_Mutation p.R476W 0.35 deleterious(0) probably_damaging(0.946) TCGA-HU-A4H8-01 20 37121578 37121578 A G RALGAPB Silent p.K64K 0.22 TCGA-HU-A4H8-01 20 3845148 3845148 G A MAVS Missense_Mutation p.A291T 0.27 tolerated(1) benign(0.043) TCGA-HU-A4H8-01 20 44472189 44472189 T C ACOT8 Missense_Mutation p.Y273C 0.39 deleterious(0.02) probably_damaging(0.974) TCGA-HU-A4H8-01 20 44472920 44472920 G A ACOT8 Nonsense_Mutation p.R210* 0.34 TCGA-HU-A4H8-01 20 45867728 45867728 G A ZMYND8 Silent p.A813A 0.35 TCGA-HU-A4H8-01 20 45878153 45878153 T A ZMYND8 Missense_Mutation p.E551V 0.43 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-HU-A4H8-01 20 47567921 47567921 G A ARFGEF2 Missense_Mutation p.R113Q 0.29 tolerated(0.42) benign(0.043) TCGA-HU-A4H8-01 20 49575760 49575760 G A MOCS3 Silent p.L127L 0.39 TCGA-HU-A4H8-01 20 49620977 49620977 G A KCNG1 Silent p.L381L 0.52 TCGA-HU-A4H8-01 20 49626813 49626813 G A KCNG1 Silent p.D21D 0.40 TCGA-HU-A4H8-01 20 52193226 52193226 C - ZNF217 Frame_Shift_Del p.A693Lfs*10 0.17 TCGA-HU-A4H8-01 20 54824427 54824427 C T MC3R Silent p.G176G 0.24 TCGA-HU-A4H8-01 20 55100860 55100860 G T FAM209A Nonsense_Mutation p.E84* 0.27 TCGA-HU-A4H8-01 20 57244434 57244436 GTG - STX16 In_Frame_Del p.V162del 0.29 TCGA-HU-A4H8-01 20 57766219 57766220 - C ZNF831 Frame_Shift_Ins p.T52Hfs*47 0.34 TCGA-HU-A4H8-01 20 61431073 61431073 C - MRGBP 3'UTR 0.57 TCGA-HU-A4H8-01 20 61458159 61458159 C T COL9A3 Missense_Mutation p.A260V 0.31 tolerated(0.73) unknown(0) TCGA-HU-A4H8-01 20 62046407 62046407 C T KCNQ2 Silent p.P458P 0.29 TCGA-HU-A4H8-01 20 62421442 62421442 G A ZBTB46 Silent p.Y223Y 0.54 TCGA-HU-A4H8-01 20 62571762 62571762 G A UCKL1 Missense_Mutation p.A460V 0.33 deleterious(0) probably_damaging(0.937) TCGA-HU-A4H8-01 20 62597958 62597958 C A ZNF512B Missense_Mutation p.K190N 0.36 deleterious_low_confidence(0.01) probably_damaging(0.968) TCGA-HU-A4H8-01 20 860413 860413 G A ANGPT4 Missense_Mutation p.R344W 0.40 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H8-01 21 28212612 28212612 C T ADAMTS1 Missense_Mutation p.D550N 0.38 tolerated(0.62) benign(0.012) TCGA-HU-A4H8-01 21 28306907 28306907 G A ADAMTS5 Missense_Mutation p.R523C 0.32 deleterious(0.03) possibly_damaging(0.856) TCGA-HU-A4H8-01 21 31709589 31709589 G T KRTAP27-1 Missense_Mutation p.P133H 0.31 deleterious(0) probably_damaging(0.983) TCGA-HU-A4H8-01 21 38525269 38525269 A G TTC3 Missense_Mutation p.Q811R 0.11 tolerated(0.06) benign(0.051) TCGA-HU-A4H8-01 21 39087042 39087042 C T KCNJ6 Missense_Mutation p.V140I 0.32 tolerated(0.38) benign(0.031) TCGA-HU-A4H8-01 21 40568106 40568106 A - BRWD1 Intron 0.28 TCGA-HU-A4H8-01 21 41450854 41450854 G A DSCAM Missense_Mutation p.R1491C 0.42 tolerated(0.2) possibly_damaging(0.901) TCGA-HU-A4H8-01 21 43716452 43716452 C T ABCG1 Missense_Mutation p.R663C 0.25 deleterious(0) probably_damaging(0.996) TCGA-HU-A4H8-01 21 43836627 43836627 G A UBASH3A Silent p.T248T 0.32 TCGA-HU-A4H8-01 21 44153463 44153463 T C PDE9A Intron 0.50 TCGA-HU-A4H8-01 21 45475599 45475599 C A TRAPPC10 Missense_Mutation p.P168H 0.30 deleterious(0) probably_damaging(1) TCGA-HU-A4H8-01 21 45679387 45679387 G T DNMT3L Missense_Mutation p.Q93K 0.30 deleterious(0) probably_damaging(0.931) TCGA-HU-A4H8-01 21 45994173 45994173 A G KRTAP10-4 Missense_Mutation p.S180G 0.30 deleterious(0.02) unknown(0) TCGA-HU-A4H8-01 21 46011828 46011828 T C KRTAP10-6 Missense_Mutation p.S180G 0.11 deleterious(0) unknown(0) TCGA-HU-A4H8-01 21 47570343 47570343 C A FTCD Missense_Mutation p.A245S 0.27 tolerated(0.13) benign(0.069) TCGA-HU-A4H8-01 21 48022217 48022217 T C S100B Missense_Mutation p.N38D 0.36 tolerated(0.08) benign(0.379) TCGA-HU-A4H8-01 22 17444639 17444639 C T GAB4 Silent p.A519A 0.28 TCGA-HU-A4H8-01 22 17601106 17601106 C T CECR6 Silent p.A304A 0.41 TCGA-HU-A4H8-01 22 18210180 18210180 C T BCL2L13 Silent p.A446A 0.46 TCGA-HU-A4H8-01 22 19504377 19504377 A G CDC45 Missense_Mutation p.T565A 0.24 deleterious(0.01) possibly_damaging(0.515) TCGA-HU-A4H8-01 22 19754189 19754190 - A TBX1 Frame_Shift_Ins p.S431Efs*186 0.29 TCGA-HU-A4H8-01 22 20128528 20128528 G A ZDHHC8 Missense_Mutation p.R296H 0.37 tolerated(0.08) benign(0.015) TCGA-HU-A4H8-01 22 20130391 20130391 C A ZDHHC8 Missense_Mutation p.A413D 0.11 tolerated(0.16) benign(0.073) TCGA-HU-A4H8-01 22 20721848 20721848 C T USP41 Missense_Mutation p.R238H 0.36 tolerated(0.43) benign(0.002) TCGA-HU-A4H8-01 22 20760329 20760329 G A ZNF74 Missense_Mutation p.A336T 0.36 deleterious(0.04) benign(0.04) TCGA-HU-A4H8-01 22 22042393 22042393 C T PPIL2 Missense_Mutation p.T340M 0.34 tolerated(0.09) possibly_damaging(0.496) TCGA-HU-A4H8-01 22 22162026 22162026 G A MAPK1 Missense_Mutation p.R77C 0.22 deleterious(0.01) benign(0.073) TCGA-HU-A4H8-01 22 22869780 22869780 C T ZNF280A Missense_Mutation p.V59I 0.28 tolerated(1) benign(0.02) TCGA-HU-A4H8-01 22 23248734 23248734 C T IGLC3 Missense_Mutation p.T75M 0.28 benign(0.235) TCGA-HU-A4H8-01 22 24134057 24134057 A - SMARCB1 Frame_Shift_Del p.T72Qfs*13 0.22 TCGA-HU-A4H8-01 22 24463060 24463060 G T CABIN1 Silent p.G720G 0.35 TCGA-HU-A4H8-01 22 25251568 25251568 C T SGSM1 Missense_Mutation p.A241V 0.35 deleterious(0.05) benign(0.134) TCGA-HU-A4H8-01 22 25601330 25601330 G A CRYBB3 Splice_Site p.X157_splice 0.42 TCGA-HU-A4H8-01 22 26176142 26176142 C T MYO18B Missense_Mutation p.R730C 0.50 deleterious(0.01) possibly_damaging(0.629) TCGA-HU-A4H8-01 22 26829563 26829563 C - ASPHD2 5'UTR 0.24 TCGA-HU-A4H8-01 22 26937081 26937081 C T TPST2 Silent p.L172L 0.25 TCGA-HU-A4H8-01 22 29670263 29670263 C T EWSR1 Missense_Mutation p.T79I 0.17 deleterious_low_confidence(0.05) benign(0.177) TCGA-HU-A4H8-01 22 30221196 30221196 A C ASCC2 Nonsense_Mutation p.Y97* 0.39 TCGA-HU-A4H8-01 22 30416523 30416523 G A MTMR3 Missense_Mutation p.A959T 0.26 tolerated_low_confidence(0.32) benign(0.002) TCGA-HU-A4H8-01 22 30681648 30681648 G A GATSL3 Silent p.I317I 0.24 TCGA-HU-A4H8-01 22 30823345 30823345 C T MTFP1 Missense_Mutation p.A128V 0.36 tolerated(0.15) benign(0.02) TCGA-HU-A4H8-01 22 31019016 31019016 G A TCN2 Missense_Mutation p.G390R 0.35 tolerated(0.19) benign(0.046) TCGA-HU-A4H8-01 22 31998270 31998271 AG - SFI1 Frame_Shift_Del p.R541Nfs*13 0.22 TCGA-HU-A4H8-01 22 37332682 37332682 C T CSF2RB Missense_Mutation p.P519L 0.29 tolerated(0.16) benign(0.009) TCGA-HU-A4H8-01 22 37603572 37603572 C T SSTR3 Missense_Mutation p.E91K 0.42 deleterious(0.04) probably_damaging(0.992) TCGA-HU-A4H8-01 22 37912113 37912113 C T CARD10 Missense_Mutation p.R189Q 0.26 tolerated(0.07) benign(0.188) TCGA-HU-A4H8-01 22 38120532 38120532 G A TRIOBP Missense_Mutation p.D657N 0.35 tolerated_low_confidence(1) benign(0.001) TCGA-HU-A4H8-01 22 38220915 38220915 G A GALR3 Missense_Mutation p.R182H 0.27 deleterious(0.04) probably_damaging(0.97) TCGA-HU-A4H8-01 22 39146931 39146931 C T SUN2 Silent p.S132S 0.31 TCGA-HU-A4H8-01 22 39148568 39148568 G A SUN2 Silent p.S22S 0.34 TCGA-HU-A4H8-01 22 42914119 42914119 A C RRP7A Silent p.A36A 0.26 TCGA-HU-A4H8-01 22 44028099 44028099 C T EFCAB6 Silent p.P706P 0.29 TCGA-HU-A4H8-01 22 47370253 47370253 C T TBC1D22A Silent p.A361A 0.39 TCGA-HU-A4H8-01 22 50278666 50278666 G T ZBED4 Missense_Mutation p.K452N 0.40 tolerated(0.06) possibly_damaging(0.883) TCGA-HU-A4H8-01 22 50485624 50485624 G A TTLL8 Silent p.Y158Y 0.38 TCGA-HU-A4H8-01 22 50591531 50591531 C T MOV10L1 Missense_Mutation p.R984W 0.35 deleterious(0) possibly_damaging(0.901) TCGA-HU-A4H8-01 22 50988085 50988085 G A KLHDC7B Missense_Mutation p.R497H 0.30 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H8-01 22 51014627 51014628 AT - CPT1B Frame_Shift_Del p.Y233Cfs*3 0.22 TCGA-HU-A4H8-01 2 106761649 106761649 C T UXS1 Missense_Mutation p.E157K 0.24 deleterious(0) probably_damaging(0.998) TCGA-HU-A4H8-01 2 11706699 11706699 C - GREB1 Frame_Shift_Del p.S126Afs*50 0.25 TCGA-HU-A4H8-01 2 120005698 120005698 C T STEAP3 Silent p.C322C 0.39 TCGA-HU-A4H8-01 2 121740422 121740422 G A GLI2 Missense_Mutation p.R550H 0.34 deleterious(0) probably_damaging(0.996) TCGA-HU-A4H8-01 2 122165239 122165239 T C CLASP1 Missense_Mutation p.D826G 0.30 deleterious(0) possibly_damaging(0.818) TCGA-HU-A4H8-01 2 127808729 127808729 C T BIN1 Splice_Site p.X487_splice 0.31 TCGA-HU-A4H8-01 2 127828152 127828152 C A BIN1 Missense_Mutation p.D98Y 0.34 deleterious(0) probably_damaging(0.923) TCGA-HU-A4H8-01 2 129075996 129075996 G C HS6ST1 Missense_Mutation p.R48G 0.23 tolerated(0.3) benign(0.029) TCGA-HU-A4H8-01 2 130921967 130921967 T - SMPD4 Frame_Shift_Del p.M321Cfs*53 0.17 TCGA-HU-A4H8-01 2 131103230 131103230 G A IMP4 Missense_Mutation p.V133I 0.33 tolerated(0.32) benign(0.061) TCGA-HU-A4H8-01 2 136548299 136548299 C T LCT Missense_Mutation p.R1755Q 0.31 tolerated(0.09) benign(0.059) TCGA-HU-A4H8-01 2 136594315 136594315 C T LCT Missense_Mutation p.R142Q 0.33 tolerated(0.73) benign(0.001) TCGA-HU-A4H8-01 2 141032033 141032034 - C LRP1B Frame_Shift_Ins p.H4368Afs*6 0.27 TCGA-HU-A4H8-01 2 148683686 148683686 A - ACVR2A Frame_Shift_Del p.K437Rfs*5 0.63 TCGA-HU-A4H8-01 2 152426860 152426860 C T NEB Missense_Mutation p.G5722D 0.31 probably_damaging(1) TCGA-HU-A4H8-01 2 15326941 15326941 G T NBAS Missense_Mutation p.N2212K 0.38 tolerated(0.68) benign(0.002) TCGA-HU-A4H8-01 2 15679374 15679374 C T NBAS Missense_Mutation p.M162I 0.30 tolerated(0.14) benign(0.02) TCGA-HU-A4H8-01 2 158152992 158152993 - A GALNT5 Frame_Shift_Ins p.N657Kfs*4 0.19 TCGA-HU-A4H8-01 2 159481624 159481624 G A PKP4 Missense_Mutation p.A280T 0.36 tolerated(0.18) benign(0.001) TCGA-HU-A4H8-01 2 162891779 162891780 - A DPP4 Frame_Shift_Ins p.L223Ffs*7 0.27 TCGA-HU-A4H8-01 2 163134716 163134716 T - IFIH1 Frame_Shift_Del p.A589Lfs*16 0.30 TCGA-HU-A4H8-01 2 163138979 163138979 T C IFIH1 Silent p.P401P 0.37 TCGA-HU-A4H8-01 2 1652363 1652363 G A PXDN Silent p.N1063N 0.40 TCGA-HU-A4H8-01 2 166606314 166606314 C T GALNT3 Missense_Mutation p.A573T 0.18 tolerated(0.58) benign(0.002) TCGA-HU-A4H8-01 2 166848219 166848219 T C SCN1A Missense_Mutation p.M1856V 0.31 tolerated(0.08) benign(0.049) TCGA-HU-A4H8-01 2 170097611 170097611 C T LRP2 Missense_Mutation p.R1311H 0.08 benign(0.002) TCGA-HU-A4H8-01 2 170537614 170537614 G T CCDC173 Missense_Mutation p.T66K 0.25 deleterious(0.04) benign(0.33) TCGA-HU-A4H8-01 2 171867901 171867901 G A TLK1 Silent p.G466G 0.26 TCGA-HU-A4H8-01 2 176958274 176958274 G A HOXD13 Missense_Mutation p.R219Q 0.33 deleterious(0) possibly_damaging(0.543) TCGA-HU-A4H8-01 2 176959377 176959377 G T HOXD13 Missense_Mutation p.E317D 0.30 deleterious(0) possibly_damaging(0.788) TCGA-HU-A4H8-01 2 17773346 17773346 G T VSNL1 Missense_Mutation p.G2V 0.34 deleterious(0) probably_damaging(1) TCGA-HU-A4H8-01 2 179395823 179395823 G A TTN Silent p.A35173A 0.20 TCGA-HU-A4H8-01 2 179414508 179414508 G A TTN Silent p.D30647D 0.38 TCGA-HU-A4H8-01 2 179421813 179421813 C T TTN Nonsense_Mutation p.W29356* 0.24 TCGA-HU-A4H8-01 2 179427631 179427631 C T TTN Missense_Mutation p.R27743Q 0.25 TCGA-HU-A4H8-01 2 179436307 179436307 G C TTN Missense_Mutation p.T24851S 0.41 TCGA-HU-A4H8-01 2 179584466 179584466 A G TTN Missense_Mutation p.L7918P 0.47 TCGA-HU-A4H8-01 2 179596254 179596254 C T TTN Missense_Mutation p.A5747T 0.24 TCGA-HU-A4H8-01 2 183095853 183095853 A G PDE1A Silent p.V157V 0.36 TCGA-HU-A4H8-01 2 187521085 187521085 G - ITGAV Frame_Shift_Del p.G561Dfs*2 0.26 TCGA-HU-A4H8-01 2 189875616 189875616 G A COL3A1 Silent p.T1418T 0.23 TCGA-HU-A4H8-01 2 196571395 196571395 C T SLC39A10 Silent p.G424G 0.39 TCGA-HU-A4H8-01 2 197183693 197183693 C T HECW2 Missense_Mutation p.A641T 0.26 tolerated_low_confidence(0.27) benign(0.122) TCGA-HU-A4H8-01 2 201342742 201342742 G A SPATS2L Silent p.T555T 0.17 TCGA-HU-A4H8-01 2 201436992 201436992 A - SGOL2 Frame_Shift_Del p.G644Vfs*18 0.23 TCGA-HU-A4H8-01 2 201683003 201683003 G A BZW1 Missense_Mutation p.A268T 0.47 tolerated(0.25) possibly_damaging(0.579) TCGA-HU-A4H8-01 2 202337717 202337717 G A STRADB Missense_Mutation p.R78Q 0.35 tolerated(0.05) benign(0.09) TCGA-HU-A4H8-01 2 202900121 202900121 C T FZD7 Missense_Mutation p.R251C 0.30 deleterious(0.01) possibly_damaging(0.849) TCGA-HU-A4H8-01 2 202900156 202900156 G A FZD7 Silent p.V262V 0.32 TCGA-HU-A4H8-01 2 20451242 20451242 A - PUM2 3'UTR 0.48 TCGA-HU-A4H8-01 2 204571310 204571310 G A CD28 5'UTR 0.25 TCGA-HU-A4H8-01 2 206166298 206166298 A - PARD3B Frame_Shift_Del p.T775Rfs*13 0.27 TCGA-HU-A4H8-01 2 208631836 208631836 C T FZD5 Missense_Mutation p.R543H 0.31 tolerated(0.06) benign(0.001) TCGA-HU-A4H8-01 2 212248737 212248737 T - ERBB4 Frame_Shift_Del p.N1177Mfs*27 0.23 TCGA-HU-A4H8-01 2 217315719 217315719 C T SMARCAL1 Missense_Mutation p.R668W 0.36 deleterious(0.02) probably_damaging(0.932) TCGA-HU-A4H8-01 2 218712887 218712889 GCT - TNS1 In_Frame_Del p.Q659del 0.34 TCGA-HU-A4H8-01 2 219301941 219301941 G A VIL1 Missense_Mutation p.R689H 0.49 deleterious(0) probably_damaging(1) TCGA-HU-A4H8-01 2 219492818 219492818 T C PLCD4 Missense_Mutation p.I280T 0.34 deleterious(0) possibly_damaging(0.828) TCGA-HU-A4H8-01 2 219513641 219513641 G A ZNF142 Silent p.A330A 0.40 TCGA-HU-A4H8-01 2 219738572 219738572 C T WNT6 3'UTR 0.25 TCGA-HU-A4H8-01 2 219893036 219893036 G A CCDC108 Missense_Mutation p.R580C 0.35 deleterious(0) probably_damaging(0.992) TCGA-HU-A4H8-01 2 219894817 219894817 C T CCDC108 Silent p.S425S 0.32 TCGA-HU-A4H8-01 2 220104675 220104675 G A GLB1L Missense_Mutation p.R230W 0.31 deleterious(0) benign(0.213) TCGA-HU-A4H8-01 2 220147591 220147591 C T DNAJB2 Missense_Mutation p.R129W 0.30 tolerated(0.05) benign(0.006) TCGA-HU-A4H8-01 2 220348798 220348798 C - SPEG Frame_Shift_Del p.A2207Hfs*32 0.25 TCGA-HU-A4H8-01 2 220419341 220419341 T C OBSL1 Silent p.V1577V 0.30 TCGA-HU-A4H8-01 2 220431817 220431817 C A OBSL1 Missense_Mutation p.E623D 0.33 deleterious(0.01) benign(0.001) TCGA-HU-A4H8-01 2 220433041 220433041 G A OBSL1 Missense_Mutation p.R340C 0.47 deleterious(0) probably_damaging(0.985) TCGA-HU-A4H8-01 2 228155478 228155478 G A COL4A3 Missense_Mutation p.R1029K 0.24 unknown(0) TCGA-HU-A4H8-01 2 228883795 228883795 G T SPHKAP Missense_Mutation p.A592E 0.33 deleterious(0.03) benign(0.039) TCGA-HU-A4H8-01 2 231307780 231307780 G A SP100 Missense_Mutation p.R79H 0.41 tolerated(0.06) possibly_damaging(0.715) TCGA-HU-A4H8-01 2 232263157 232263157 G A B3GNT7 Missense_Mutation p.V243I 0.35 tolerated(0.14) possibly_damaging(0.895) TCGA-HU-A4H8-01 2 232326264 232326264 G A NCL Silent p.D200D 0.34 TCGA-HU-A4H8-01 2 233246288 233246288 G A ALPP Missense_Mutation p.R464H 0.39 deleterious(0) probably_damaging(0.987) TCGA-HU-A4H8-01 2 234247347 234247347 G A SAG Missense_Mutation p.V324I 0.35 tolerated(0.32) benign(0.071) TCGA-HU-A4H8-01 2 234356822 234356822 G A DGKD Silent p.S503S 0.46 TCGA-HU-A4H8-01 2 234398032 234398032 C T USP40 Missense_Mutation p.R1048Q 0.47 deleterious(0) probably_damaging(0.995) TCGA-HU-A4H8-01 2 234442369 234442369 A T USP40 Silent p.R420R 0.40 TCGA-HU-A4H8-01 2 234775895 234775895 T C MSL3P1 RNA 0.30 TCGA-HU-A4H8-01 2 237074648 237074648 C T GBX2 Missense_Mutation p.R319Q 0.08 deleterious(0.02) probably_damaging(0.944) TCGA-HU-A4H8-01 2 238277429 238277429 G A COL6A3 Silent p.F1559F 0.43 TCGA-HU-A4H8-01 2 239102960 239102960 G T ILKAP Missense_Mutation p.P45H 0.43 deleterious(0.02) benign(0.332) TCGA-HU-A4H8-01 2 241404611 241404611 G A GPC1 Missense_Mutation p.G418R 0.25 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H8-01 2 242432735 242432735 C T FARP2 Silent p.L975L 0.37 TCGA-HU-A4H8-01 2 242681982 242681982 C T D2HGDH Silent p.S161S 0.33 TCGA-HU-A4H8-01 2 24426495 24426495 C A ITSN2 Nonstop_Mutation p.*1698Yext*3 0.36 TCGA-HU-A4H8-01 2 25384074 25384074 C T POMC Missense_Mutation p.R227H 0.27 deleterious(0) benign(0.243) TCGA-HU-A4H8-01 2 26499963 26499963 C T HADHB Missense_Mutation p.S126F 0.41 deleterious(0.01) probably_damaging(0.995) TCGA-HU-A4H8-01 2 27306197 27306197 C T EMILIN1 Silent p.G586G 0.31 TCGA-HU-A4H8-01 2 27461393 27461393 G A CAD Missense_Mutation p.R1652H 0.37 tolerated(0.13) benign(0.032) TCGA-HU-A4H8-01 2 3405588 3405588 A - TRAPPC12 Frame_Shift_Del p.A365Lfs*8 0.27 TCGA-HU-A4H8-01 2 37376193 37376193 A - EIF2AK2 Intron 0.26 TCGA-HU-A4H8-01 2 38540317 38540317 C T ATL2 Silent p.K260K 0.27 TCGA-HU-A4H8-01 2 39213084 39213084 G A SOS1 Nonsense_Mutation p.R1295* 0.39 TCGA-HU-A4H8-01 2 43452037 43452039 GGA - ZFP36L2 In_Frame_Del p.S302del 0.32 TCGA-HU-A4H8-01 2 44139614 44139614 T C LRPPRC Missense_Mutation p.M1078V 0.09 deleterious(0) benign(0) TCGA-HU-A4H8-01 2 44569598 44569598 T C PREPL Missense_Mutation p.D237G 0.34 tolerated(0.18) benign(0.005) TCGA-HU-A4H8-01 2 46808174 46808174 A - RHOQ Frame_Shift_Del p.R193Efs*2 0.33 TCGA-HU-A4H8-01 2 51254743 51254743 G A NRXN1 Silent p.G223G 0.19 TCGA-HU-A4H8-01 2 51254815 51254815 G A NRXN1 Silent p.S199S 0.43 TCGA-HU-A4H8-01 2 60689540 60689540 G A BCL11A Silent p.S169S 0.32 TCGA-HU-A4H8-01 2 68521133 68521133 G A CNRIP1 Missense_Mutation p.T119I 0.17 deleterious(0.01) possibly_damaging(0.587) TCGA-HU-A4H8-01 2 69092737 69092737 A G BMP10 3'UTR 0.33 TCGA-HU-A4H8-01 2 74750442 74750442 G A DQX1 Nonsense_Mutation p.R347* 0.23 TCGA-HU-A4H8-01 2 74762732 74762732 C T LOXL3 Missense_Mutation p.A467T 0.12 deleterious(0.02) possibly_damaging(0.752) TCGA-HU-A4H8-01 2 80529622 80529622 G A LRRTM1 Silent p.I441I 0.42 TCGA-HU-A4H8-01 2 96687157 96687157 C - GPAT2 3'Flank 0.30 TCGA-HU-A4H8-01 2 96781701 96781701 G A ADRA2B Missense_Mutation p.T63M 0.12 deleterious(0) probably_damaging(0.961) TCGA-HU-A4H8-01 2 98351712 98351712 G T ZAP70 Splice_Site p.X361_splice 0.31 TCGA-HU-A4H8-01 2 98392356 98392356 A T TMEM131 Missense_Mutation p.S1424T 0.26 deleterious_low_confidence(0) probably_damaging(0.952) TCGA-HU-A4H8-01 3 10370396 10370396 C T ATP2B2 3'UTR 0.18 TCGA-HU-A4H8-01 3 108409725 108409725 G A DZIP3 Missense_Mutation p.R1203Q 0.33 tolerated(0.22) benign(0.004) TCGA-HU-A4H8-01 3 111664163 111664163 G - PHLDB2 Frame_Shift_Del p.V822Lfs*6 0.27 TCGA-HU-A4H8-01 3 111732401 111732401 C T TAGLN3 3'UTR 0.34 TCGA-HU-A4H8-01 3 112998721 112998721 G A BOC Missense_Mutation p.E691K 0.24 tolerated(0.16) benign(0.368) TCGA-HU-A4H8-01 3 114058003 114058004 GG - ZBTB20 Frame_Shift_Del p.P692Cfs*33 0.23 TCGA-HU-A4H8-01 3 114069726 114069726 C T ZBTB20 Missense_Mutation p.R400Q 0.37 deleterious(0.03) possibly_damaging(0.885) TCGA-HU-A4H8-01 3 119276481 119276481 C G CD80 Missense_Mutation p.C32S 0.33 tolerated(0.74) benign(0.009) TCGA-HU-A4H8-01 3 124165071 124165071 G A KALRN Missense_Mutation p.R1124Q 0.27 deleterious(0) possibly_damaging(0.733) TCGA-HU-A4H8-01 3 12422929 12422929 G A PPARG Missense_Mutation p.R140H 0.36 deleterious(0) probably_damaging(0.998) TCGA-HU-A4H8-01 3 124281775 124281775 C T KALRN Missense_Mutation p.T45M 0.29 deleterious(0) possibly_damaging(0.895) TCGA-HU-A4H8-01 3 124356011 124356013 TTC - KALRN 5'UTR 0.34 TCGA-HU-A4H8-01 3 124748138 124748138 C T HEG1 Missense_Mutation p.G171R 0.15 deleterious_low_confidence(0.04) possibly_damaging(0.542) TCGA-HU-A4H8-01 3 124748159 124748159 C T HEG1 Missense_Mutation p.A164T 0.13 tolerated_low_confidence(1) benign(0) TCGA-HU-A4H8-01 3 126268880 126268880 G A C3orf22 Missense_Mutation p.P86L 0.27 tolerated(0.29) probably_damaging(0.96) TCGA-HU-A4H8-01 3 127294606 127294606 C T TPRA1 Missense_Mutation p.R219H 0.30 deleterious(0.01) benign(0.035) TCGA-HU-A4H8-01 3 12778317 12778317 C T TMEM40 Missense_Mutation p.V164I 0.29 tolerated(0.1) benign(0.037) TCGA-HU-A4H8-01 3 12838209 12838209 G A CAND2 5'UTR 0.24 TCGA-HU-A4H8-01 3 130743390 130743390 T C ASTE1 Missense_Mutation p.H254R 0.38 tolerated(0.65) benign(0.025) TCGA-HU-A4H8-01 3 135870296 135870296 C T MSL2 Missense_Mutation p.C476Y 0.44 deleterious(0) possibly_damaging(0.588) TCGA-HU-A4H8-01 3 138038392 138038392 G T NME9 Silent p.P19P 0.19 TCGA-HU-A4H8-01 3 1414122 1414122 A - CNTN6 Frame_Shift_Del p.G547Efs*16 0.19 TCGA-HU-A4H8-01 3 142539759 142539759 G A PCOLCE2 Silent p.L360L 0.16 TCGA-HU-A4H8-01 3 14564512 14564512 G A GRIP2 RNA 0.41 TCGA-HU-A4H8-01 3 147128515 147128515 G A ZIC1 Missense_Mutation p.A206T 0.28 tolerated(0.28) benign(0.376) TCGA-HU-A4H8-01 3 14862390 14862390 C T FGD5 Silent p.S604S 0.24 TCGA-HU-A4H8-01 3 14941914 14941914 T C FGD5 Silent p.Y1053Y 0.36 TCGA-HU-A4H8-01 3 15084406 15084406 T - NR2C2 Frame_Shift_Del p.F582Lfs*10 0.33 TCGA-HU-A4H8-01 3 151078324 151078324 T - MED12L Frame_Shift_Del p.L929* 0.23 TCGA-HU-A4H8-01 3 151171553 151171553 T - IGSF10 Frame_Shift_Del p.M112* 0.18 TCGA-HU-A4H8-01 3 15604925 15604925 G A HACL1 Silent p.D548D 0.22 TCGA-HU-A4H8-01 3 161214699 161214699 C A OTOL1 Missense_Mutation p.S35Y 0.29 tolerated(0.7) unknown(0) TCGA-HU-A4H8-01 3 169999697 169999697 T C PRKCI Silent p.N336N 0.22 TCGA-HU-A4H8-01 3 170204021 170204021 G A SLC7A14 Missense_Mutation p.A299V 0.40 tolerated(0.07) possibly_damaging(0.893) TCGA-HU-A4H8-01 3 173322839 173322839 G A NLGN1 Missense_Mutation p.E151K 0.32 deleterious(0) probably_damaging(0.99) TCGA-HU-A4H8-01 3 173996895 173996895 C - NLGN1 Frame_Shift_Del p.Q370Rfs*3 0.22 TCGA-HU-A4H8-01 3 17550029 17550029 G A TBC1D5 Silent p.L12L 0.18 TCGA-HU-A4H8-01 3 183059378 183059378 T C MCF2L2 Missense_Mutation p.R106G 0.33 deleterious(0.01) possibly_damaging(0.859) TCGA-HU-A4H8-01 3 183705643 183705643 C A ABCC5 Missense_Mutation p.R169M 0.22 deleterious(0) benign(0.342) TCGA-HU-A4H8-01 3 184033224 184033224 G T EIF4G1 5'UTR 0.30 TCGA-HU-A4H8-01 3 184104636 184104636 C T CHRD Nonsense_Mutation p.R734* 0.33 TCGA-HU-A4H8-01 3 185639834 185639834 C T TRA2B Silent p.T201T 0.33 TCGA-HU-A4H8-01 3 187444607 187444607 G T BCL6 Silent p.T540T 0.29 TCGA-HU-A4H8-01 3 195452969 195452969 C T MUC20 Missense_Mutation p.P499S 0.20 tolerated(0.33) unknown(0) TCGA-HU-A4H8-01 3 25833299 25833299 C A OXSM Missense_Mutation p.A263E 0.23 deleterious(0) probably_damaging(0.995) TCGA-HU-A4H8-01 3 32409430 32409430 G A CMTM8 Missense_Mutation p.V130I 0.43 tolerated(0.08) benign(0.084) TCGA-HU-A4H8-01 3 32860361 32860361 G A TRIM71 Silent p.P263P 0.39 TCGA-HU-A4H8-01 3 33866819 33866819 A T PDCD6IP Missense_Mutation p.L201F 0.34 tolerated(0.54) benign(0.056) TCGA-HU-A4H8-01 3 35786001 35786002 GA - ARPP21 Intron 0.24 TCGA-HU-A4H8-01 3 38017361 38017361 A G CTDSPL Silent p.S227S 0.33 TCGA-HU-A4H8-01 3 38524050 38524050 C T ACVR2B Missense_Mutation p.P448L 0.41 tolerated(0.05) benign(0.275) TCGA-HU-A4H8-01 3 38592162 38592162 C T SCN5A Missense_Mutation p.E1901K 0.38 deleterious(0) probably_damaging(0.997) TCGA-HU-A4H8-01 3 42605166 42605166 G A SEC22C Silent p.F65F 0.34 TCGA-HU-A4H8-01 3 44489494 44489494 G A ZNF445 Missense_Mutation p.R557C 0.31 deleterious(0.04) possibly_damaging(0.689) TCGA-HU-A4H8-01 3 44763579 44763579 C T ZNF502 Missense_Mutation p.R424W 0.17 deleterious(0) probably_damaging(0.997) TCGA-HU-A4H8-01 3 44794850 44794850 C T KIAA1143 Missense_Mutation p.E150K 0.23 deleterious(0.01) benign(0.335) TCGA-HU-A4H8-01 3 44952776 44952776 C T TGM4 Silent p.G597G 0.32 TCGA-HU-A4H8-01 3 46245704 46245704 G A CCR1 Missense_Mutation p.A34V 0.36 tolerated(0.06) benign(0.035) TCGA-HU-A4H8-01 3 4715042 4715042 G A ITPR1 Silent p.S794S 0.43 TCGA-HU-A4H8-01 3 4715060 4715060 C T ITPR1 Silent p.I800I 0.07 TCGA-HU-A4H8-01 3 48455444 48455446 CCT - PLXNB1 In_Frame_Del p.E1415del 0.40 TCGA-HU-A4H8-01 3 48459458 48459458 G A PLXNB1 Missense_Mutation p.T1079I 0.32 deleterious(0.01) possibly_damaging(0.85) TCGA-HU-A4H8-01 3 48624754 48624754 G - COL7A1 Frame_Shift_Del p.P1003Rfs*13 0.40 TCGA-HU-A4H8-01 3 48696614 48696614 G A CELSR3 Missense_Mutation p.R1152W 0.21 deleterious(0) probably_damaging(1) TCGA-HU-A4H8-01 3 49042450 49042450 C T P4HTM Silent p.N348N 0.38 TCGA-HU-A4H8-01 3 49083909 49083909 A G QRICH1 Silent p.G540G 0.32 TCGA-HU-A4H8-01 3 49318216 49318216 C T USP4 Missense_Mutation p.A869T 0.25 deleterious(0) possibly_damaging(0.766) TCGA-HU-A4H8-01 3 49694655 49694655 C T BSN Missense_Mutation p.R2556W 0.44 unknown(0) TCGA-HU-A4H8-01 3 49759164 49759164 G A GMPPB 3'UTR 0.39 TCGA-HU-A4H8-01 3 49759471 49759471 C T GMPPB Missense_Mutation p.R293Q 0.37 tolerated(0.37) benign(0.002) TCGA-HU-A4H8-01 3 49775735 49775735 C T IP6K1 Missense_Mutation p.R115H 0.42 tolerated(0.12) probably_damaging(0.997) TCGA-HU-A4H8-01 3 50144924 50144924 C - RBM5 Frame_Shift_Del p.L322Sfs*12 0.21 TCGA-HU-A4H8-01 3 50357136 50357136 C T HYAL2 Missense_Mutation p.R262H 0.38 deleterious(0.03) benign(0.404) TCGA-HU-A4H8-01 3 50369082 50369082 C T RASSF1 Missense_Mutation p.R227H 0.20 deleterious(0.04) benign(0.103) TCGA-HU-A4H8-01 3 51417604 51417604 C - DOCK3 Frame_Shift_Del p.P1852Qfs*45 0.40 TCGA-HU-A4H8-01 3 51749692 51749692 C T GRM2 Missense_Mutation p.R635W 0.41 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H8-01 3 51929174 51929174 G A IQCF1 Missense_Mutation p.A117V 0.33 tolerated(0.34) benign(0.004) TCGA-HU-A4H8-01 3 52430481 52430481 C T DNAH1 Missense_Mutation p.P3786L 0.42 probably_damaging(0.999) TCGA-HU-A4H8-01 3 52552861 52552861 C T STAB1 Silent p.H1670H 0.22 TCGA-HU-A4H8-01 3 52720836 52720836 A - GNL3 Frame_Shift_Del p.K24Rfs*9 0.30 TCGA-HU-A4H8-01 3 54961972 54961972 G A LRTM1 5'UTR 0.35 TCGA-HU-A4H8-01 3 55521033 55521033 G A WNT5A 5'UTR 0.43 TCGA-HU-A4H8-01 3 56657046 56657046 A - FAM208A 3'UTR 0.33 TCGA-HU-A4H8-01 3 57232250 57232250 T - HESX1 Frame_Shift_Del p.N178Ifs*10 0.28 TCGA-HU-A4H8-01 3 67548713 67548713 C T SUCLG2 Missense_Mutation p.C255Y 0.29 deleterious(0) probably_damaging(0.995) TCGA-HU-A4H8-01 3 6903043 6903043 C T GRM7 5'UTR 0.46 TCGA-HU-A4H8-01 3 8944121 8944121 T - RAD18 Frame_Shift_Del p.T371Qfs*2 0.26 TCGA-HU-A4H8-01 3 9831424 9831424 C T TADA3 Missense_Mutation p.R144Q 0.35 deleterious(0.03) possibly_damaging(0.519) TCGA-HU-A4H8-01 4 10083028 10083028 C T WDR1 Missense_Mutation p.V413I 0.35 tolerated(0.26) benign(0.009) TCGA-HU-A4H8-01 4 103553186 103553186 G C MANBA 3'UTR 0.32 TCGA-HU-A4H8-01 4 103718505 103718505 A - UBE2D3 3'Flank 0.26 TCGA-HU-A4H8-01 4 109767322 109767322 T - COL25A1 Frame_Shift_Del p.G497Efs*14 0.27 TCGA-HU-A4H8-01 4 109774059 109774059 G A COL25A1 Missense_Mutation p.T448M 0.36 tolerated(0.36) probably_damaging(0.996) TCGA-HU-A4H8-01 4 115597234 115597234 T - UGT8 Frame_Shift_Del p.L474Yfs*22 0.28 TCGA-HU-A4H8-01 4 125590698 125590699 CT - ANKRD50 Frame_Shift_Del p.H1246* 0.22 TCGA-HU-A4H8-01 4 126371970 126371970 A G FAT4 Missense_Mutation p.T3267A 0.38 probably_damaging(0.974) TCGA-HU-A4H8-01 4 128722950 128722950 G A HSPA4L Silent p.A180A 0.23 TCGA-HU-A4H8-01 4 13544093 13544093 C T NKX3-2 Missense_Mutation p.A176T 0.40 tolerated(0.34) benign(0.001) TCGA-HU-A4H8-01 4 141488942 141488942 C T UCP1 Missense_Mutation p.G106R 0.35 tolerated(0.06) benign(0.098) TCGA-HU-A4H8-01 4 141590148 141590148 C T TBC1D9 Missense_Mutation p.R504H 0.43 deleterious(0) probably_damaging(0.996) TCGA-HU-A4H8-01 4 145568052 145568052 G A HHIP Silent p.R75R 0.39 TCGA-HU-A4H8-01 4 145628239 145628239 A - HHIP Frame_Shift_Del p.N330Ifs*7 0.19 TCGA-HU-A4H8-01 4 146058514 146058514 T - OTUD4 3'UTR 0.48 TCGA-HU-A4H8-01 4 146058966 146058966 G A OTUD4 Silent p.S922S 0.07 TCGA-HU-A4H8-01 4 146059041 146059041 A G OTUD4 Silent p.H897H 0.09 TCGA-HU-A4H8-01 4 149357500 149357500 G A NR3C2 Silent p.S171S 0.25 TCGA-HU-A4H8-01 4 151520184 151520184 C T LRBA Silent p.A2007A 0.37 TCGA-HU-A4H8-01 4 155254305 155254305 C T DCHS2 Missense_Mutation p.A520T 0.25 tolerated(0.14) possibly_damaging(0.69) TCGA-HU-A4H8-01 4 15717330 15717330 T - BST1 Frame_Shift_Del p.F206Lfs*38 0.28 TCGA-HU-A4H8-01 4 164394544 164394544 G A TKTL2 Nonsense_Mutation p.R115* 0.36 TCGA-HU-A4H8-01 4 170618378 170618379 - T CLCN3 Frame_Shift_Ins p.A355Cfs*17 0.31 TCGA-HU-A4H8-01 4 17503370 17503370 G A QDPR Silent p.G136G 0.40 TCGA-HU-A4H8-01 4 183815664 183815664 G A DCTD Silent p.C124C 0.45 TCGA-HU-A4H8-01 4 186336370 186336370 T - UFSP2 Frame_Shift_Del p.N208Ifs*3 0.37 TCGA-HU-A4H8-01 4 1920186 1920186 C T WHSC1 Missense_Mutation p.P416S 0.43 tolerated(0.22) benign(0.005) TCGA-HU-A4H8-01 4 24550501 24550502 - T DHX15 Frame_Shift_Ins p.Q409Tfs*14 0.28 TCGA-HU-A4H8-01 4 25351264 25351264 G T ZCCHC4 Missense_Mutation p.D304Y 0.25 deleterious(0.02) probably_damaging(0.988) TCGA-HU-A4H8-01 4 2659551 2659551 C T FAM193A Missense_Mutation p.R154C 0.18 deleterious(0) probably_damaging(0.978) TCGA-HU-A4H8-01 4 2930187 2930188 - AAG ADD1 In_Frame_Ins p.K752dup 0.33 TCGA-HU-A4H8-01 4 30726135 30726135 G A PCDH7 Missense_Mutation p.V1031M 0.09 deleterious(0.01) probably_damaging(0.958) TCGA-HU-A4H8-01 4 3134560 3134560 G A HTT Silent p.A805A 0.24 TCGA-HU-A4H8-01 4 3432430 3432431 - C RGS12 Frame_Shift_Ins p.G1291Rfs*45 0.36 TCGA-HU-A4H8-01 4 3526763 3526763 C T LRPAP1 Missense_Mutation p.V74M 0.34 deleterious(0.03) probably_damaging(0.96) TCGA-HU-A4H8-01 4 36161102 36161102 G A ARAP2 Missense_Mutation p.P823L 0.37 deleterious(0) benign(0.137) TCGA-HU-A4H8-01 4 38691476 38691476 C - KLF3 Frame_Shift_Del p.P226Rfs*52 0.20 TCGA-HU-A4H8-01 4 38698928 38698929 CT - KLF3 3'UTR 0.29 TCGA-HU-A4H8-01 4 39230289 39230289 C T WDR19 Missense_Mutation p.A654V 0.31 tolerated(0.24) benign(0.006) TCGA-HU-A4H8-01 4 39293450 39293450 C T RFC1 Missense_Mutation p.V994I 0.28 tolerated(0.33) benign(0.026) TCGA-HU-A4H8-01 4 4285458 4285458 A - LYAR Frame_Shift_Del p.F4Lfs*10 0.26 TCGA-HU-A4H8-01 4 4436579 4436580 - T STX18 Frame_Shift_Ins p.I207Nfs*4 0.36 TCGA-HU-A4H8-01 4 44450516 44450516 C T KCTD8 Missense_Mutation p.G9S 0.32 tolerated_low_confidence(0.05) benign(0.016) TCGA-HU-A4H8-01 4 44719161 44719161 T - GNPDA2 Frame_Shift_Del p.E127Kfs*5 0.20 TCGA-HU-A4H8-01 4 47559697 47559698 - G ATP10D Frame_Shift_Ins p.L617Vfs*4 0.29 TCGA-HU-A4H8-01 4 4864628 4864628 C T MSX1 Missense_Mutation p.R224C 0.39 deleterious(0) probably_damaging(1) TCGA-HU-A4H8-01 4 515054 515055 - T PIGG Frame_Shift_Ins p.L443Ffs*20 0.27 TCGA-HU-A4H8-01 4 55146512 55146512 G T PDGFRA Missense_Mutation p.G729V 0.47 deleterious(0) probably_damaging(0.994) TCGA-HU-A4H8-01 4 6107538 6107538 C T JAKMIP1 Missense_Mutation p.E96K 0.43 deleterious(0) probably_damaging(0.943) TCGA-HU-A4H8-01 4 62598963 62598963 C T LPHN3 Missense_Mutation p.R296W 0.30 deleterious(0) probably_damaging(1) TCGA-HU-A4H8-01 4 6374306 6374306 G A PPP2R2C Missense_Mutation p.S190L 0.33 deleterious(0) probably_damaging(0.989) TCGA-HU-A4H8-01 4 6695772 6695774 AGA - S100P In_Frame_Del p.K39del 0.20 TCGA-HU-A4H8-01 4 68964641 68964641 T A TMPRSS11F Missense_Mutation p.I43F 0.28 deleterious(0) probably_damaging(0.991) TCGA-HU-A4H8-01 4 71657076 71657076 T A RUFY3 Intron 0.25 TCGA-HU-A4H8-01 4 72319254 72319255 - T SLC4A4 Frame_Shift_Ins p.A458Cfs*3 0.25 TCGA-HU-A4H8-01 4 73930979 73930979 C T COX18 Missense_Mutation p.A196T 0.36 tolerated(0.68) benign(0.002) TCGA-HU-A4H8-01 4 73956848 73956848 C T ANKRD17 Missense_Mutation p.C2166Y 0.36 benign(0.004) TCGA-HU-A4H8-01 4 74021806 74021806 T C ANKRD17 Missense_Mutation p.N261S 0.33 possibly_damaging(0.758) TCGA-HU-A4H8-01 4 755175 755175 A - PCGF3 Frame_Shift_Del p.K192Nfs*74 0.26 TCGA-HU-A4H8-01 4 81196142 81196142 A - FGF5 Frame_Shift_Del p.G148Efs*45 0.26 TCGA-HU-A4H8-01 4 83799934 83799934 C T SEC31A Silent p.Q117Q 0.32 TCGA-HU-A4H8-01 4 87662887 87662887 T C PTPN13 Missense_Mutation p.V802A 0.21 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H8-01 4 87735693 87735693 C A PTPN13 Missense_Mutation p.L2488I 0.30 tolerated_low_confidence(0.13) unknown(0) TCGA-HU-A4H8-01 4 88996024 88996024 C T PKD2 Silent p.D861D 0.41 TCGA-HU-A4H8-01 4 89415436 89415436 A G HERC5 Missense_Mutation p.M800V 0.30 tolerated(0.1) benign(0.004) TCGA-HU-A4H8-01 4 89618966 89618966 G A NAP1L5 5'UTR 0.31 TCGA-HU-A4H8-01 4 89658707 89658707 C A FAM13A Splice_Site p.X855_splice 0.20 TCGA-HU-A4H8-01 4 94316824 94316824 A G GRID2 Missense_Mutation p.M438V 0.18 deleterious(0.05) benign(0.184) TCGA-HU-A4H8-01 4 960274 960274 G A DGKQ Missense_Mutation p.R470W 0.32 tolerated(0.12) probably_damaging(0.977) TCGA-HU-A4H8-01 5 101631744 101631744 G A SLCO4C1 Missense_Mutation p.L75F 0.39 tolerated(0.69) benign(0.033) TCGA-HU-A4H8-01 5 1089189 1089189 G T SLC12A7 Missense_Mutation p.L133M 0.07 deleterious(0.01) probably_damaging(0.972) TCGA-HU-A4H8-01 5 113698585 113698585 C T KCNN2 Missense_Mutation p.A38V 0.47 tolerated_low_confidence(0.55) benign(0.055) TCGA-HU-A4H8-01 5 11384986 11384986 G A CTNND2 Missense_Mutation p.S323L 0.36 tolerated(0.1) benign(0.083) TCGA-HU-A4H8-01 5 115177372 115177372 G A ATG12 5'UTR 0.36 TCGA-HU-A4H8-01 5 121188080 121188080 G A FTMT Missense_Mutation p.R141H 0.34 tolerated(0.32) benign(0.002) TCGA-HU-A4H8-01 5 121413317 121413317 G A LOX Missense_Mutation p.R122C 0.37 deleterious(0.01) possibly_damaging(0.847) TCGA-HU-A4H8-01 5 126793023 126793023 G A MEGF10 3'UTR 0.28 TCGA-HU-A4H8-01 5 127610310 127610311 - C FBN2 Frame_Shift_Ins p.F2554Vfs*4 0.32 TCGA-HU-A4H8-01 5 132158995 132158995 G A SHROOM1 Missense_Mutation p.R725C 0.30 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H8-01 5 132545909 132545909 C T FSTL4 Missense_Mutation p.V564M 0.35 tolerated(1) benign(0.003) TCGA-HU-A4H8-01 5 133481970 133481970 G A TCF7 Silent p.P377P 0.35 TCGA-HU-A4H8-01 5 134364669 134364669 T C PITX1 Missense_Mutation p.T249A 0.52 tolerated(0.39) benign(0.029) TCGA-HU-A4H8-01 5 134870907 134870907 G A NEUROG1 Silent p.G158G 0.32 TCGA-HU-A4H8-01 5 135692587 135692587 G A TRPC7 Silent p.H163H 0.38 TCGA-HU-A4H8-01 5 135692718 135692718 G A TRPC7 Missense_Mutation p.R120C 0.27 deleterious(0) probably_damaging(1) TCGA-HU-A4H8-01 5 13751371 13751371 T - DNAH5 Splice_Site p.X3677_splice 0.33 TCGA-HU-A4H8-01 5 138208851 138208851 G T LRRTM2 Missense_Mutation p.L467I 0.31 deleterious(0.01) benign(0.146) TCGA-HU-A4H8-01 5 138700290 138700290 G A PAIP2 Missense_Mutation p.R59H 0.31 deleterious(0.01) benign(0) TCGA-HU-A4H8-01 5 138773104 138773104 C T DNAJC18 Missense_Mutation p.G62R 0.38 tolerated(0.2) possibly_damaging(0.549) TCGA-HU-A4H8-01 5 13885313 13885313 T C DNAH5 Missense_Mutation p.D923G 0.43 possibly_damaging(0.539) TCGA-HU-A4H8-01 5 140027106 140027106 G A NDUFA2 Silent p.I21I 0.40 TCGA-HU-A4H8-01 5 140077214 140077214 A G HARS2 Missense_Mutation p.N420D 0.37 tolerated(0.11) benign(0.033) TCGA-HU-A4H8-01 5 140182243 140182243 C T PCDHA3 Silent p.N487N 0.29 TCGA-HU-A4H8-01 5 140188216 140188216 G A PCDHA4 Missense_Mutation p.A482T 0.30 deleterious_low_confidence(0.01) benign(0.379) TCGA-HU-A4H8-01 5 140215247 140215247 G A PCDHA7 Missense_Mutation p.A427T 0.38 deleterious_low_confidence(0.02) possibly_damaging(0.59) TCGA-HU-A4H8-01 5 140250554 140250554 C T PCDHA11 Silent p.R622R 0.33 TCGA-HU-A4H8-01 5 140256852 140256852 G A PCDHA12 Missense_Mutation p.A599T 0.34 deleterious_low_confidence(0) possibly_damaging(0.9) TCGA-HU-A4H8-01 5 140263524 140263524 C T PCDHA13 Silent p.D557D 0.35 TCGA-HU-A4H8-01 5 140475274 140475274 G A PCDHB2 Silent p.S300S 0.31 TCGA-HU-A4H8-01 5 140553683 140553683 G A PCDHB7 Missense_Mutation p.V423I 0.35 deleterious_low_confidence(0.03) benign(0.203) TCGA-HU-A4H8-01 5 140589878 140589878 G A PCDHB12 Missense_Mutation p.A467T 0.31 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-HU-A4H8-01 5 140594150 140594150 C T PCDHB13 Missense_Mutation p.T152M 0.35 deleterious_low_confidence(0.04) benign(0.009) TCGA-HU-A4H8-01 5 140616147 140616147 C T PCDHB18 RNA 0.34 TCGA-HU-A4H8-01 5 140626476 140626476 G A PCDHB15 Missense_Mutation p.V444I 0.36 tolerated_low_confidence(0.18) benign(0.03) TCGA-HU-A4H8-01 5 140712338 140712338 C T PCDHGA1 Missense_Mutation p.A696V 0.26 deleterious_low_confidence(0) possibly_damaging(0.901) TCGA-HU-A4H8-01 5 140755314 140755314 A G PCDHGA6 Missense_Mutation p.Q555R 0.24 deleterious_low_confidence(0.01) benign(0.062) TCGA-HU-A4H8-01 5 145886723 145886723 A - TCERG1 Frame_Shift_Del p.K957Rfs*17 0.34 TCGA-HU-A4H8-01 5 147505095 147505095 C T SPINK5 Silent p.C916C 0.19 TCGA-HU-A4H8-01 5 150847278 150847278 C T SLC36A1 Missense_Mutation p.A172V 0.34 tolerated(0.1) benign(0.167) TCGA-HU-A4H8-01 5 155771622 155771622 A G SGCD Missense_Mutation p.M43V 0.29 tolerated(0.08) probably_damaging(0.991) TCGA-HU-A4H8-01 5 157065329 157065329 G T SOX30 Missense_Mutation p.L597I 0.39 tolerated(0.77) benign(0.026) TCGA-HU-A4H8-01 5 15937257 15937257 C T FBXL7 Missense_Mutation p.R480C 0.45 deleterious(0) possibly_damaging(0.892) TCGA-HU-A4H8-01 5 162943585 162943586 TG - MAT2B Frame_Shift_Del p.V197Dfs*5 0.22 TCGA-HU-A4H8-01 5 168175427 168175431 CTCTC - SLIT3 Frame_Shift_Del p.E716* 0.36 TCGA-HU-A4H8-01 5 172750373 172750373 C T STC2 Missense_Mutation p.G119S 0.29 tolerated(0.71) benign(0.007) TCGA-HU-A4H8-01 5 175956364 175956364 G A RNF44 Silent p.F387F 0.36 TCGA-HU-A4H8-01 5 176940764 176940764 G T DDX41 Nonsense_Mutation p.Y340* 0.07 TCGA-HU-A4H8-01 5 177571054 177571054 G A RMND5B Silent p.L213L 0.39 TCGA-HU-A4H8-01 5 178339671 178339671 C T ZFP2 5'UTR 0.34 TCGA-HU-A4H8-01 5 178410152 178410152 G A GRM6 Missense_Mutation p.T732M 0.32 tolerated(0.07) probably_damaging(0.954) TCGA-HU-A4H8-01 5 179132840 179132840 C A CANX Missense_Mutation p.P53H 0.37 tolerated(0.07) possibly_damaging(0.653) TCGA-HU-A4H8-01 5 180047278 180047278 G T FLT4 Missense_Mutation p.L813M 0.23 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H8-01 5 180052971 180052971 C T FLT4 Missense_Mutation p.R440H 0.36 tolerated(0.16) benign(0.12) TCGA-HU-A4H8-01 5 182187 182187 T C PLEKHG4B Missense_Mutation p.S1189P 0.33 deleterious(0.02) probably_damaging(0.996) TCGA-HU-A4H8-01 5 19473685 19473685 C A CDH18 Missense_Mutation p.A675S 0.33 deleterious(0.01) probably_damaging(0.996) TCGA-HU-A4H8-01 5 235283 235283 C T SDHA Silent p.H363H 0.36 TCGA-HU-A4H8-01 5 31983413 31983413 C T PDZD2 Missense_Mutation p.A210V 0.36 tolerated(0.45) benign(0.004) TCGA-HU-A4H8-01 5 34823757 34823757 G A RAI14 Missense_Mutation p.A607T 0.10 deleterious(0.04) probably_damaging(0.976) TCGA-HU-A4H8-01 5 36985440 36985440 G T NIPBL Missense_Mutation p.G720W 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.715) TCGA-HU-A4H8-01 5 37314390 37314390 C T NUP155 Silent p.Q782Q 0.25 TCGA-HU-A4H8-01 5 37352911 37352911 G A NUP155 Nonsense_Mutation p.R162* 0.13 TCGA-HU-A4H8-01 5 40775544 40775546 CTC - PRKAA1 In_Frame_Del p.G110del 0.13 TCGA-HU-A4H8-01 5 42806957 42806957 T A SEPP1 Intron 0.44 TCGA-HU-A4H8-01 5 42807037 42807037 A G SEPP1 Missense_Mutation p.L126P 0.43 tolerated(0.05) probably_damaging(0.974) TCGA-HU-A4H8-01 5 5303508 5303508 C T ADAMTS16 Missense_Mutation p.P973S 0.36 tolerated(0.47) benign(0.05) TCGA-HU-A4H8-01 5 53814902 53814902 G T SNX18 Missense_Mutation p.V374F 0.36 deleterious(0.02) probably_damaging(0.967) TCGA-HU-A4H8-01 5 53815132 53815132 C T SNX18 Silent p.N450N 0.35 TCGA-HU-A4H8-01 5 54327395 54327395 C T GZMK Silent p.G189G 0.24 TCGA-HU-A4H8-01 5 5463611 5463611 C T KIAA0947 Silent p.C1388C 0.21 TCGA-HU-A4H8-01 5 56531794 56531794 C T GPBP1 Missense_Mutation p.P145L 0.17 deleterious(0) probably_damaging(0.916) TCGA-HU-A4H8-01 5 60224781 60224781 A - ERCC8 Frame_Shift_Del p.L28Wfs*5 0.25 TCGA-HU-A4H8-01 5 61668339 61668341 CTT - KIF2A In_Frame_Del p.S575del 0.36 TCGA-HU-A4H8-01 5 75427714 75427714 A T SV2C Missense_Mutation p.S47C 0.36 deleterious_low_confidence(0.01) benign(0.401) TCGA-HU-A4H8-01 5 92923833 92923833 G A NR2F1 Missense_Mutation p.R225H 0.28 deleterious(0) probably_damaging(0.996) TCGA-HU-A4H8-01 5 92929431 92929431 C T NR2F1 Silent p.I385I 0.38 TCGA-HU-A4H8-01 5 94782294 94782294 G A FAM81B Missense_Mutation p.E308K 0.33 tolerated(0.08) benign(0.185) TCGA-HU-A4H8-01 5 95067805 95067805 G A RHOBTB3 Intron 0.23 TCGA-HU-A4H8-01 6 100896062 100896062 G A SIM1 Silent p.H270H 0.32 TCGA-HU-A4H8-01 6 101847073 101847073 G A GRIK2 5'UTR 0.53 TCGA-HU-A4H8-01 6 102134229 102134229 G A GRIK2 Splice_Site p.X317_splice 0.31 TCGA-HU-A4H8-01 6 102483233 102483233 G A GRIK2 Silent p.T701T 0.25 TCGA-HU-A4H8-01 6 107391602 107391602 C - BEND3 Frame_Shift_Del p.D265Tfs*54 0.10 TCGA-HU-A4H8-01 6 109764884 109764884 G A SMPD2 Missense_Mutation p.A350T 0.35 tolerated(0.5) benign(0.003) TCGA-HU-A4H8-01 6 110636677 110636677 C T METTL24 Missense_Mutation p.C142Y 0.35 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H8-01 6 111694065 111694065 G A REV3L Silent p.D1831D 0.45 TCGA-HU-A4H8-01 6 11185383 11185383 T - NEDD9 3'UTR 0.32 TCGA-HU-A4H8-01 6 112015695 112015695 A G FYN Missense_Mutation p.Y386H 0.37 deleterious(0) probably_damaging(1) TCGA-HU-A4H8-01 6 117714409 117714409 T - ROS1 Frame_Shift_Del p.I414Lfs*14 0.26 TCGA-HU-A4H8-01 6 12123069 12123069 G T HIVEP1 Missense_Mutation p.R1014I 0.41 deleterious(0.03) probably_damaging(0.954) TCGA-HU-A4H8-01 6 124979530 124979530 G A NKAIN2 Missense_Mutation p.A158T 0.37 deleterious(0) benign(0.291) TCGA-HU-A4H8-01 6 126210197 126210197 C T NCOA7 Nonsense_Mutation p.R333* 0.37 TCGA-HU-A4H8-01 6 13711196 13711196 G C RANBP9 Missense_Mutation p.S181C 0.20 deleterious(0) probably_damaging(0.971) TCGA-HU-A4H8-01 6 137191048 137191048 G A PEX7 Silent p.A218A 0.33 TCGA-HU-A4H8-01 6 138655927 138655927 G A KIAA1244 Missense_Mutation p.G1982S 0.24 tolerated_low_confidence(0.78) benign(0.001) TCGA-HU-A4H8-01 6 143094904 143094904 C A HIVEP2 Missense_Mutation p.K324N 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-HU-A4H8-01 6 143793296 143793296 G T PEX3 Splice_Site p.X193_splice 0.45 TCGA-HU-A4H8-01 6 146127127 146127127 C T FBXO30 Missense_Mutation p.A139T 0.29 tolerated(0.36) benign(0.099) TCGA-HU-A4H8-01 6 151153303 151153303 C T PLEKHG1 Missense_Mutation p.A1019V 0.38 deleterious(0) possibly_damaging(0.899) TCGA-HU-A4H8-01 6 152623082 152623082 G A SYNE1 Silent p.V5821V 0.12 TCGA-HU-A4H8-01 6 158049476 158049477 AC - ZDHHC14 Frame_Shift_Del p.T221Sfs*25 0.27 TCGA-HU-A4H8-01 6 159654490 159654490 C T FNDC1 Silent p.P982P 0.31 TCGA-HU-A4H8-01 6 160479944 160479944 G A IGF2R Missense_Mutation p.V969I 0.30 tolerated(1) benign(0.019) TCGA-HU-A4H8-01 6 160679772 160679772 G A SLC22A2 Silent p.D6D 0.34 TCGA-HU-A4H8-01 6 163876309 163876310 AG - QKI Splice_Site p.X48_splice 0.22 TCGA-HU-A4H8-01 6 168363236 168363236 G A MLLT4 Missense_Mutation p.A1644T 0.26 tolerated_low_confidence(0.1) unknown(0) TCGA-HU-A4H8-01 6 170089045 170089045 A T WDR27 Silent p.V19V 0.30 TCGA-HU-A4H8-01 6 17292140 17292140 C T RBM24 Silent p.A167A 0.29 TCGA-HU-A4H8-01 6 19838301 19838301 C T ID4 Silent p.L106L 0.44 TCGA-HU-A4H8-01 6 20402537 20402537 T C E2F3 Missense_Mutation p.V25A 0.31 tolerated_low_confidence(1) benign(0) TCGA-HU-A4H8-01 6 20402541 20402541 C T E2F3 Silent p.A26A 0.34 TCGA-HU-A4H8-01 6 20402547 20402547 C A E2F3 Silent p.A28A 0.17 TCGA-HU-A4H8-01 6 26092988 26092989 - C HFE Frame_Shift_Ins p.Q233Pfs*11 0.29 TCGA-HU-A4H8-01 6 26384083 26384083 C T BTN2A2 Missense_Mutation p.P12S 0.41 tolerated(0.25) unknown(0) TCGA-HU-A4H8-01 6 27925524 27925524 G A OR2B6 Missense_Mutation p.C169Y 0.25 deleterious(0) probably_damaging(1) TCGA-HU-A4H8-01 6 28213039 28213039 C T ZKSCAN4 Missense_Mutation p.R498Q 0.33 tolerated(1) benign(0.001) TCGA-HU-A4H8-01 6 28540480 28540480 T C SCAND3 Silent p.L1062L 0.35 TCGA-HU-A4H8-01 6 29556085 29556085 G A OR2H2 Missense_Mutation p.V122M 0.36 deleterious(0.04) benign(0.243) TCGA-HU-A4H8-01 6 30030011 30030011 G A ZNRD1 Missense_Mutation p.R86H 0.44 deleterious(0.01) probably_damaging(0.973) TCGA-HU-A4H8-01 6 30140232 30140232 G A TRIM15 3'UTR 0.39 TCGA-HU-A4H8-01 6 30153692 30153692 C T TRIM26 Nonsense_Mutation p.W527* 0.09 TCGA-HU-A4H8-01 6 30457758 30457758 A G HLA-E Missense_Mutation p.N107S 0.40 deleterious_low_confidence(0.01) probably_damaging(0.981) TCGA-HU-A4H8-01 6 31785362 31785362 T G HSPA1A Missense_Mutation p.L610R 0.09 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-HU-A4H8-01 6 31797556 31797556 T G HSPA1B Missense_Mutation p.L610R 0.40 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-HU-A4H8-01 6 32007841 32007841 G A CYP21A2 Silent p.A266A 0.39 TCGA-HU-A4H8-01 6 32017099 32017099 G A TNXB 5'Flank 0.35 TCGA-HU-A4H8-01 6 32017224 32017224 C T TNXB 5'Flank 0.26 TCGA-HU-A4H8-01 6 32020536 32020536 C - TNXB Frame_Shift_Del p.G3007Afs*29 0.31 TCGA-HU-A4H8-01 6 32944465 32944468 AGAG - BRD2 Frame_Shift_Del p.E319Vfs*31 0.30 TCGA-HU-A4H8-01 6 33261421 33261421 G A RGL2 Missense_Mutation p.R522W 0.24 deleterious(0) probably_damaging(0.991) TCGA-HU-A4H8-01 6 33383808 33383830 CTCGGAGAGTACGGCCTGATGGC - PHF1 Frame_Shift_Del p.A546Vfs*7 0.20 TCGA-HU-A4H8-01 6 33631649 33631649 C T ITPR3 Silent p.F380F 0.31 TCGA-HU-A4H8-01 6 33638232 33638232 C T ITPR3 Missense_Mutation p.R774C 0.35 deleterious(0) probably_damaging(1) TCGA-HU-A4H8-01 6 33995965 33995965 G A GRM4 Missense_Mutation p.T874M 0.35 deleterious(0) possibly_damaging(0.487) TCGA-HU-A4H8-01 6 37328304 37328304 T - RNF8 Frame_Shift_Del p.L66* 0.28 TCGA-HU-A4H8-01 6 4125443 4125443 C T C6orf201 Intron 0.10 TCGA-HU-A4H8-01 6 44374080 44374081 - A CDC5L Frame_Shift_Ins p.D263Rfs*12 0.35 TCGA-HU-A4H8-01 6 47847178 47847178 C T PTCHD4 Missense_Mutation p.V468I 0.31 tolerated(0.18) probably_damaging(0.956) TCGA-HU-A4H8-01 6 49806157 49806157 T G CRISP1 Missense_Mutation p.K205N 0.40 tolerated(0.13) benign(0.11) TCGA-HU-A4H8-01 6 51613045 51613045 C T PKHD1 Silent p.A3123A 0.29 TCGA-HU-A4H8-01 6 55378846 55378846 C T HMGCLL1 Missense_Mutation p.G211E 0.23 deleterious(0) probably_damaging(1) TCGA-HU-A4H8-01 6 6266819 6266819 C T F13A1 Silent p.T181T 0.29 TCGA-HU-A4H8-01 6 64395813 64395814 GT - PHF3 Splice_Site p.X730_splice 0.17 TCGA-HU-A4H8-01 6 64423004 64423005 - C PHF3 Frame_Shift_Ins p.P1843Sfs*46 0.25 TCGA-HU-A4H8-01 6 71003924 71003924 A G COL9A1 Silent p.I214I 0.35 TCGA-HU-A4H8-01 6 7229250 7229250 G A RREB1 Silent p.L306L 0.24 TCGA-HU-A4H8-01 6 7248772 7248772 C T RREB1 Silent p.C1600C 0.16 TCGA-HU-A4H8-01 6 72596775 72596775 C - RIMS1 Frame_Shift_Del p.M19Cfs*7 0.18 TCGA-HU-A4H8-01 6 72596851 72596851 G A RIMS1 Missense_Mutation p.R42Q 0.35 deleterious(0) probably_damaging(0.974) TCGA-HU-A4H8-01 6 75858174 75858174 C T COL12A1 Missense_Mutation p.R1396Q 0.39 benign(0.005) TCGA-HU-A4H8-01 6 7862640 7862640 C T BMP6 Silent p.R371R 0.37 TCGA-HU-A4H8-01 6 80656946 80656946 C T ELOVL4 Silent p.T17T 0.40 TCGA-HU-A4H8-01 6 80878721 80878721 T - BCKDHB Frame_Shift_Del p.F204Lfs*26 0.20 TCGA-HU-A4H8-01 6 90333701 90333701 C T ANKRD6 Silent p.S381S 0.41 TCGA-HU-A4H8-01 6 97052726 97052726 G A FHL5 Missense_Mutation p.R87H 0.22 tolerated(0.11) benign(0.007) TCGA-HU-A4H8-01 6 97627291 97627291 C A MMS22L Missense_Mutation p.E843D 0.42 deleterious(0.04) benign(0.022) TCGA-HU-A4H8-01 7 100280373 100280373 G - GIGYF1 Frame_Shift_Del p.L814* 0.24 TCGA-HU-A4H8-01 7 100456716 100456716 G A SLC12A9 Missense_Mutation p.V304I 0.05 tolerated(0.5) benign(0.001) TCGA-HU-A4H8-01 7 101839973 101839974 - C CUX1 Frame_Shift_Ins p.P442Sfs*16 0.27 TCGA-HU-A4H8-01 7 101944461 101944461 C T SH2B2 Silent p.A252A 0.38 TCGA-HU-A4H8-01 7 102087007 102087007 G A ORAI2 Silent p.R91R 0.41 TCGA-HU-A4H8-01 7 104746985 104746985 A - KMT2E Frame_Shift_Del p.K873Nfs*8 0.25 TCGA-HU-A4H8-01 7 104783701 104783701 C T SRPK2 Missense_Mutation p.R297H 0.34 deleterious(0.03) benign(0.036) TCGA-HU-A4H8-01 7 105148680 105148680 C T PUS7 Missense_Mutation p.E94K 0.28 tolerated(0.1) possibly_damaging(0.475) TCGA-HU-A4H8-01 7 107621183 107621183 G A LAMB1 Silent p.S250S 0.25 TCGA-HU-A4H8-01 7 111430583 111430583 C T DOCK4 Missense_Mutation p.R1082Q 0.39 deleterious(0.01) possibly_damaging(0.631) TCGA-HU-A4H8-01 7 115892010 115892010 G A TES Missense_Mutation p.R300Q 0.37 deleterious(0.04) benign(0.316) TCGA-HU-A4H8-01 7 122342061 122342061 A G RNF148 Silent p.D248D 0.53 TCGA-HU-A4H8-01 7 128445885 128445885 G A CCDC136 Missense_Mutation p.R340Q 0.38 deleterious(0.01) probably_damaging(1) TCGA-HU-A4H8-01 7 133884088 133884088 A G LRGUK Silent p.E554E 0.25 TCGA-HU-A4H8-01 7 134576303 134576303 C T CALD1 Intron 0.40 TCGA-HU-A4H8-01 7 138270574 138270574 G A TRIM24 3'UTR 0.12 TCGA-HU-A4H8-01 7 138601707 138601707 C T KIAA1549 Missense_Mutation p.G889S 0.22 tolerated(1) benign(0.002) TCGA-HU-A4H8-01 7 139168284 139168284 G A KLRG2 Silent p.P35P 0.31 TCGA-HU-A4H8-01 7 140434291 140434291 C - BRAF 3'UTR 0.27 TCGA-HU-A4H8-01 7 142364629 142364629 G T TRBV24-1 Missense_Mutation p.Q88H 0.36 tolerated(0.06) benign(0.153) TCGA-HU-A4H8-01 7 144098495 144098496 - G NOBOX Frame_Shift_Ins p.R163Pfs*48 0.63 TCGA-HU-A4H8-01 7 148979375 148979375 G A ZNF783 Missense_Mutation p.A528T 0.30 tolerated_low_confidence(0.2) benign(0.012) TCGA-HU-A4H8-01 7 149129302 149129302 C T ZNF777 Silent p.A687A 0.34 TCGA-HU-A4H8-01 7 149463221 149463221 C T ZNF467 Missense_Mutation p.A124T 0.35 tolerated(0.41) benign(0.003) TCGA-HU-A4H8-01 7 149512418 149512418 G A SSPO RNA 0.32 TCGA-HU-A4H8-01 7 149559477 149559477 G A ZNF862 Silent p.T1076T 0.32 TCGA-HU-A4H8-01 7 150739088 150739088 G A ABCB8 Missense_Mutation p.R553H 0.23 deleterious(0) probably_damaging(0.998) TCGA-HU-A4H8-01 7 151057316 151057316 C T NUB1 Silent p.D285D 0.19 TCGA-HU-A4H8-01 7 151072987 151072987 C T NUB1 Silent p.T507T 0.27 TCGA-HU-A4H8-01 7 1510813 1510813 G A INTS1 Silent p.N2101N 0.40 TCGA-HU-A4H8-01 7 151874710 151874710 G A KMT2C Nonsense_Mutation p.R2610* 0.32 TCGA-HU-A4H8-01 7 152373219 152373219 C T XRCC2 5'UTR 0.41 TCGA-HU-A4H8-01 7 1535864 1535864 C T INTS1 Missense_Mutation p.V547M 0.26 tolerated(0.11) benign(0.124) TCGA-HU-A4H8-01 7 155556608 155556609 - G RBM33 Frame_Shift_Ins p.L1031Pfs*109 0.38 TCGA-HU-A4H8-01 7 195605 195605 C T FAM20C Silent p.A219A 0.34 TCGA-HU-A4H8-01 7 20689716 20689716 G T ABCB5 Silent p.G426G 0.32 TCGA-HU-A4H8-01 7 27181657 27181657 G A HOXA5 Missense_Mutation p.R204C 0.40 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H8-01 7 29438071 29438071 C T CHN2 Missense_Mutation p.R87W 0.41 deleterious(0) probably_damaging(0.998) TCGA-HU-A4H8-01 7 30795440 30795440 T C INMT Silent p.I255I 0.38 TCGA-HU-A4H8-01 7 31377947 31377947 G A NEUROD6 Silent p.S312S 0.30 TCGA-HU-A4H8-01 7 31682655 31682655 A G CCDC129 Silent p.T583T 0.05 TCGA-HU-A4H8-01 7 32909836 32909836 T G KBTBD2 Missense_Mutation p.K331N 0.45 tolerated(0.31) benign(0.055) TCGA-HU-A4H8-01 7 34917755 34917755 G T NPSR1 Missense_Mutation p.G365C 0.22 deleterious_low_confidence(0) benign(0.272) TCGA-HU-A4H8-01 7 38313227 38313227 T - TRGJP Frame_Shift_Del p.I8Sfs*? 0.33 TCGA-HU-A4H8-01 7 40118358 40118358 T C CDK13 Silent p.L979L 0.33 TCGA-HU-A4H8-01 7 4056923 4056923 G A SDK1 Silent p.A847A 0.10 TCGA-HU-A4H8-01 7 42003913 42003913 T - GLI3 3'UTR 0.25 TCGA-HU-A4H8-01 7 44079224 44079224 G A LINC00957 RNA 0.50 TCGA-HU-A4H8-01 7 44556854 44556854 A G NPC1L1 Missense_Mutation p.L1107P 0.37 deleterious(0) probably_damaging(0.995) TCGA-HU-A4H8-01 7 44573082 44573082 A G NPC1L1 Missense_Mutation p.L786P 0.40 deleterious(0) probably_damaging(1) TCGA-HU-A4H8-01 7 4899470 4899470 G A PAPOLB 3'UTR 0.56 TCGA-HU-A4H8-01 7 5427872 5427872 G A TNRC18 Missense_Mutation p.A528V 0.29 probably_damaging(0.997) TCGA-HU-A4H8-01 7 54617746 54617746 C T VSTM2A Missense_Mutation p.R173C 0.34 deleterious(0) probably_damaging(0.998) TCGA-HU-A4H8-01 7 55540588 55540588 G A VOPP1 Missense_Mutation p.T160M 0.41 deleterious_low_confidence(0.02) probably_damaging(0.998) TCGA-HU-A4H8-01 7 5662686 5662686 G A RNF216 Silent p.F859F 0.24 TCGA-HU-A4H8-01 7 57510008 57510008 C T ZNF716 Missense_Mutation p.P5L 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.823) TCGA-HU-A4H8-01 7 63529392 63529392 T G ZNF727 Missense_Mutation p.L43V 0.14 deleterious(0.01) probably_damaging(0.973) TCGA-HU-A4H8-01 7 6449906 6449906 G T DAGLB Missense_Mutation p.L559I 0.19 deleterious(0.01) probably_damaging(0.996) TCGA-HU-A4H8-01 7 7493103 7493103 C A COL28A1 Missense_Mutation p.G470W 0.24 deleterious(0) probably_damaging(1) TCGA-HU-A4H8-01 7 82430834 82430834 C T PCLO Missense_Mutation p.A5003T 0.22 unknown(0) TCGA-HU-A4H8-01 7 84628663 84628663 G A SEMA3D 3'UTR 0.50 TCGA-HU-A4H8-01 7 86978480 86978480 A - CROT Frame_Shift_Del p.K34Nfs*13 0.20 TCGA-HU-A4H8-01 7 91570265 91570265 C G AKAP9 5'UTR 0.31 TCGA-HU-A4H8-01 7 91726523 91726523 G A AKAP9 Missense_Mutation p.R3417H 0.33 benign(0.035) TCGA-HU-A4H8-01 7 93518426 93518426 G A TFPI2 Silent p.S127S 0.37 TCGA-HU-A4H8-01 7 95157219 95157219 C T ASB4 Silent p.Y194Y 0.32 TCGA-HU-A4H8-01 7 96639257 96639257 G T DLX6 Silent p.S260S 0.39 TCGA-HU-A4H8-01 7 98608683 98608683 C T TRRAP Silent p.R3635R 0.40 TCGA-HU-A4H8-01 7 99103706 99103706 C - ZKSCAN5 Frame_Shift_Del p.P15Qfs*13 0.27 TCGA-HU-A4H8-01 7 99754484 99754484 G - C7orf43 Frame_Shift_Del p.P326Lfs*12 0.27 TCGA-HU-A4H8-01 7 99818409 99818409 G A PVRIG Missense_Mutation p.R208H 0.34 tolerated(0.58) benign(0) TCGA-HU-A4H8-01 7 99821311 99821311 C T GATS Missense_Mutation p.R141Q 0.28 tolerated(0.15) probably_damaging(0.939) TCGA-HU-A4H8-01 8 101270746 101270746 G A RNF19A 3'UTR 0.33 TCGA-HU-A4H8-01 8 101300216 101300216 T - RNF19A Frame_Shift_Del p.R63Efs*5 0.19 TCGA-HU-A4H8-01 8 101586120 101586120 A - SNX31 Frame_Shift_Del p.F432Lfs*4 0.10 TCGA-HU-A4H8-01 8 101733683 101733683 G A PABPC1 Silent p.C43C 0.16 TCGA-HU-A4H8-01 8 102381208 102381208 G A NACAP1 RNA 0.28 TCGA-HU-A4H8-01 8 103277490 103277490 C T UBR5 Missense_Mutation p.R2480H 0.25 tolerated(0.11) probably_damaging(0.926) TCGA-HU-A4H8-01 8 103289349 103289349 T - UBR5 Frame_Shift_Del p.E2121Kfs*28 0.22 TCGA-HU-A4H8-01 8 10388924 10388924 A G PRSS55 Missense_Mutation p.D156G 0.22 deleterious(0) probably_damaging(1) TCGA-HU-A4H8-01 8 10557880 10557880 C A C8orf74 Missense_Mutation p.P262T 0.26 tolerated(0.08) possibly_damaging(0.865) TCGA-HU-A4H8-01 8 110099964 110099964 T A TRHR Missense_Mutation p.L75M 0.23 deleterious(0) probably_damaging(1) TCGA-HU-A4H8-01 8 113318256 113318256 T G CSMD3 Missense_Mutation p.N2684T 0.27 tolerated(0.13) possibly_damaging(0.456) TCGA-HU-A4H8-01 8 116616339 116616339 C T TRPS1 Silent p.A619A 0.23 TCGA-HU-A4H8-01 8 118819539 118819539 A G EXT1 Silent p.D600D 0.22 TCGA-HU-A4H8-01 8 135817137 135817137 C T MIR30D RNA 0.26 TCGA-HU-A4H8-01 8 139890218 139890218 C T COL22A1 Missense_Mutation p.V145M 0.30 unknown(0) TCGA-HU-A4H8-01 8 140631239 140631239 G A KCNK9 Silent p.G129G 0.18 TCGA-HU-A4H8-01 8 142178354 142178354 C T DENND3 Missense_Mutation p.R589W 0.19 deleterious(0.01) possibly_damaging(0.677) TCGA-HU-A4H8-01 8 142221453 142221453 C T SLC45A4 3'UTR 0.25 TCGA-HU-A4H8-01 8 142228929 142228929 G A SLC45A4 Silent p.G219G 0.27 TCGA-HU-A4H8-01 8 142435181 142435181 C T PTP4A3 Missense_Mutation p.R47C 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-HU-A4H8-01 8 142441098 142441098 G A PTP4A3 Missense_Mutation p.R159Q 0.26 deleterious(0.04) probably_damaging(0.982) TCGA-HU-A4H8-01 8 142506534 142506534 G - MROH5 Frame_Shift_Del p.R15Afs*23 0.18 TCGA-HU-A4H8-01 8 143624776 143624776 C T BAI1 Missense_Mutation p.R1476W 0.20 deleterious(0) probably_damaging(0.991) TCGA-HU-A4H8-01 8 144103050 144103050 C T LY6E Silent p.G80G 0.23 TCGA-HU-A4H8-01 8 144776320 144776320 C T ZNF707 Missense_Mutation p.R246C 0.33 deleterious(0.05) benign(0.092) TCGA-HU-A4H8-01 8 144811446 144811446 G A FAM83H Silent p.S165S 0.29 TCGA-HU-A4H8-01 8 144992352 144992352 G A PLEC Silent p.D4016D 0.33 TCGA-HU-A4H8-01 8 145051961 145051961 G A PARP10 Silent p.R923R 0.17 TCGA-HU-A4H8-01 8 145541660 145541660 C T DGAT1 Missense_Mutation p.A258T 0.16 deleterious(0.02) possibly_damaging(0.899) TCGA-HU-A4H8-01 8 145666250 145666250 G A TONSL Missense_Mutation p.R339C 0.30 tolerated(0.05) benign(0.326) TCGA-HU-A4H8-01 8 145737873 145737873 T C RECQL4 Missense_Mutation p.E986G 0.25 deleterious(0) probably_damaging(0.948) TCGA-HU-A4H8-01 8 146107413 146107413 G A ZNF250 Silent p.T390T 0.23 TCGA-HU-A4H8-01 8 16884801 16884801 C T MICU3 Nonsense_Mutation p.R5* 0.15 TCGA-HU-A4H8-01 8 17919227 17919227 T C ASAH1 Missense_Mutation p.N240S 0.26 deleterious(0) probably_damaging(0.992) TCGA-HU-A4H8-01 8 1857614 1857614 C T ARHGEF10 Silent p.A707A 0.22 TCGA-HU-A4H8-01 8 22438965 22438965 G A PDLIM2 Missense_Mutation p.S306N 0.30 tolerated(0.29) benign(0.051) TCGA-HU-A4H8-01 8 22548299 22548299 C T EGR3 Missense_Mutation p.R284H 0.23 deleterious(0) probably_damaging(0.973) TCGA-HU-A4H8-01 8 26237200 26237200 G A BNIP3L 5'Flank 0.29 TCGA-HU-A4H8-01 8 26435753 26435753 T - DPYSL2 5'UTR 0.22 TCGA-HU-A4H8-01 8 27461863 27461863 C T CLU Silent p.T293T 0.21 TCGA-HU-A4H8-01 8 28902933 28902933 G A HMBOX1 Missense_Mutation p.A303T 0.23 deleterious(0.03) probably_damaging(0.999) TCGA-HU-A4H8-01 8 30949415 30949415 G A WRN Splice_Site p.X633_splice 0.26 TCGA-HU-A4H8-01 8 30969237 30969237 G A WRN Missense_Mutation p.R732Q 0.32 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H8-01 8 31498176 31498176 T C NRG1 Missense_Mutation p.S79P 0.20 deleterious(0.02) possibly_damaging(0.559) TCGA-HU-A4H8-01 8 33367395 33367395 G A TTI2 Nonsense_Mutation p.Q235* 0.30 TCGA-HU-A4H8-01 8 38912090 38912090 C T ADAM9 Missense_Mutation p.R465W 0.24 tolerated(0.11) benign(0.001) TCGA-HU-A4H8-01 8 41581130 41581130 T C ANK1 Missense_Mutation p.I278V 0.28 tolerated(1) benign(0.071) TCGA-HU-A4H8-01 8 41583342 41583342 G A ANK1 Silent p.N216N 0.24 TCGA-HU-A4H8-01 8 42262421 42262421 T C VDAC3 Missense_Mutation p.Y248H 0.25 deleterious(0.02) probably_damaging(1) TCGA-HU-A4H8-01 8 52321537 52321537 C T PXDNL Missense_Mutation p.A883T 0.24 tolerated(0.06) benign(0.02) TCGA-HU-A4H8-01 8 53077775 53077775 C T ST18 Missense_Mutation p.M405I 0.24 deleterious(0) probably_damaging(0.995) TCGA-HU-A4H8-01 8 53573204 53573205 - A RB1CC1 Frame_Shift_Ins p.L547Ffs*7 0.15 TCGA-HU-A4H8-01 8 54163462 54163462 C G OPRK1 Missense_Mutation p.D46H 0.23 deleterious(0.01) benign(0.001) TCGA-HU-A4H8-01 8 56015092 56015092 G T XKR4 Missense_Mutation p.S15I 0.22 tolerated_low_confidence(0.31) benign(0.004) TCGA-HU-A4H8-01 8 57079206 57079206 C T PLAG1 Missense_Mutation p.V367M 0.26 tolerated(0.29) benign(0) TCGA-HU-A4H8-01 8 57080936 57080937 - A PLAG1 5'UTR 0.28 TCGA-HU-A4H8-01 8 61137128 61137128 A G CA8 Missense_Mutation p.I198T 0.23 tolerated(0.09) possibly_damaging(0.473) TCGA-HU-A4H8-01 8 67577032 67577032 G A VCPIP1 Missense_Mutation p.T721M 0.21 tolerated(0.08) benign(0.216) TCGA-HU-A4H8-01 8 67786699 67786699 A - MCMDC2 Intron 0.25 TCGA-HU-A4H8-01 8 75227597 75227597 C T JPH1 Missense_Mutation p.R213Q 0.23 tolerated(0.11) possibly_damaging(0.581) TCGA-HU-A4H8-01 8 77767090 77767090 A - ZFHX4 Frame_Shift_Del p.R2647Gfs*44 0.20 TCGA-HU-A4H8-01 8 77775852 77775852 C A ZFHX4 Missense_Mutation p.P3301H 0.33 probably_damaging(0.998) TCGA-HU-A4H8-01 8 77895873 77895873 T C PEX2 Missense_Mutation p.Q181R 0.27 deleterious(0.02) possibly_damaging(0.868) TCGA-HU-A4H8-01 8 8235027 8235027 C T SGK223 Missense_Mutation p.A298T 0.32 benign(0) TCGA-HU-A4H8-01 8 85799874 85799874 C T RALYL Silent p.L254L 0.24 TCGA-HU-A4H8-01 8 87242019 87242019 C T SLC7A13 Missense_Mutation p.S163N 0.25 tolerated(0.07) probably_damaging(0.913) TCGA-HU-A4H8-01 8 87590929 87590929 C A CNGB3 Missense_Mutation p.E697D 0.31 tolerated(0.2) possibly_damaging(0.81) TCGA-HU-A4H8-01 8 90967512 90967512 T - NBN Frame_Shift_Del p.R466Gfs*18 0.22 TCGA-HU-A4H8-01 8 91637965 91637965 G T TMEM64 Silent p.T359T 0.17 TCGA-HU-A4H8-01 8 92352747 92352747 A - SLC26A7 Frame_Shift_Del p.K333Nfs*20 0.24 TCGA-HU-A4H8-01 8 92972468 92972468 G A RUNX1T1 3'UTR 0.16 TCGA-HU-A4H8-01 8 95686611 95686611 A - ESRP1 Frame_Shift_Del p.N512Tfs*2 0.54 TCGA-HU-A4H8-01 8 98289974 98289974 C T TSPYL5 Silent p.P33P 0.46 TCGA-HU-A4H8-01 8 98290067 98290067 G A TSPYL5 Silent p.S2S 0.21 TCGA-HU-A4H8-01 9 100124588 100124588 G A CCDC180 Missense_Mutation p.G1300D 0.36 tolerated(0.62) benign(0) TCGA-HU-A4H8-01 9 100849611 100849611 C T TRIM14 3'UTR 0.29 TCGA-HU-A4H8-01 9 100850119 100850119 C T TRIM14 Missense_Mutation p.R321H 0.30 deleterious(0.02) possibly_damaging(0.657) TCGA-HU-A4H8-01 9 101470716 101470716 G A GABBR2 Missense_Mutation p.R102W 0.30 tolerated(0.23) benign(0.044) TCGA-HU-A4H8-01 9 104357038 104357038 G A PPP3R2 Missense_Mutation p.R59W 0.17 deleterious(0) possibly_damaging(0.54) TCGA-HU-A4H8-01 9 113341460 113341460 C T SVEP1 Missense_Mutation p.V122M 0.42 probably_damaging(1) TCGA-HU-A4H8-01 9 115652385 115652385 G A SLC46A2 Missense_Mutation p.H193Y 0.40 tolerated(0.17) benign(0.094) TCGA-HU-A4H8-01 9 115806416 115806416 T - ZFP37 Frame_Shift_Del p.N161Ifs*24 0.29 TCGA-HU-A4H8-01 9 118949583 118949583 G A PAPPA Missense_Mutation p.R189H 0.36 tolerated(0.78) benign(0.1) TCGA-HU-A4H8-01 9 123924525 123924525 A - CNTRL Frame_Shift_Del p.K1802Sfs*9 0.24 TCGA-HU-A4H8-01 9 124072991 124072991 C T GSN Silent p.H178H 0.37 TCGA-HU-A4H8-01 9 124089585 124089585 G T GSN Splice_Site p.X581_splice 0.26 TCGA-HU-A4H8-01 9 125140230 125140230 C T PTGS1 Silent p.F49F 0.32 TCGA-HU-A4H8-01 9 126392754 126392754 A G DENND1A Missense_Mutation p.L207P 0.45 deleterious(0) probably_damaging(0.987) TCGA-HU-A4H8-01 9 127110068 127110068 C - NEK6 Frame_Shift_Del p.P302Hfs*74 0.24 TCGA-HU-A4H8-01 9 127911822 127911823 AA - PPP6C 3'UTR 0.52 TCGA-HU-A4H8-01 9 130211929 130211929 C T RPL12 Missense_Mutation p.R57K 0.44 tolerated(0.36) benign(0.022) TCGA-HU-A4H8-01 9 130475026 130475026 G A C9orf117 Silent p.T392T 0.29 TCGA-HU-A4H8-01 9 130829272 130829272 C T NAIF1 Missense_Mutation p.A37T 0.33 tolerated(0.25) probably_damaging(0.996) TCGA-HU-A4H8-01 9 130885323 130885323 C T PTGES2 Silent p.A259A 0.27 TCGA-HU-A4H8-01 9 131107438 131107438 G A SLC27A4 Missense_Mutation p.G56S 0.25 deleterious(0.04) possibly_damaging(0.711) TCGA-HU-A4H8-01 9 131112647 131112649 GTG - SLC27A4 In_Frame_Del p.V259del 0.35 TCGA-HU-A4H8-01 9 131392621 131392621 G A SPTAN1 Silent p.S2243S 0.34 TCGA-HU-A4H8-01 9 131708898 131708898 C G DOLK Missense_Mutation p.V229L 0.32 tolerated(0.12) probably_damaging(0.947) TCGA-HU-A4H8-01 9 132382797 132382797 A G C9orf50 Silent p.P19P 0.29 TCGA-HU-A4H8-01 9 134027125 134027125 G A NUP214 Silent p.S760S 0.35 TCGA-HU-A4H8-01 9 134387493 134387493 A G POMT1 Missense_Mutation p.N373S 0.32 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H8-01 9 135464717 135464717 G A BARHL1 Silent p.P264P 0.20 TCGA-HU-A4H8-01 9 136913440 136913440 C T BRD3 Missense_Mutation p.R284H 0.45 deleterious(0.01) probably_damaging(0.964) TCGA-HU-A4H8-01 9 138393760 138393760 C A MRPS2 Silent p.S80S 0.40 TCGA-HU-A4H8-01 9 138837033 138837033 C T UBAC1 Silent p.T239T 0.17 TCGA-HU-A4H8-01 9 139100961 139100961 C T QSOX2 Silent p.T570T 0.32 TCGA-HU-A4H8-01 9 139243180 139243180 C T GPSM1 Silent p.S413S 0.18 TCGA-HU-A4H8-01 9 139371886 139371886 G A SEC16A Missense_Mutation p.A61V 0.30 tolerated(0.26) benign(0.005) TCGA-HU-A4H8-01 9 139820459 139820459 G A TRAF2 3'UTR 0.52 TCGA-HU-A4H8-01 9 140147654 140147654 G A C9orf173 Silent p.T300T 0.64 TCGA-HU-A4H8-01 9 140437253 140437253 C T PNPLA7 Silent p.R169R 0.38 TCGA-HU-A4H8-01 9 140846799 140846799 T C CACNA1B Missense_Mutation p.M347T 0.33 deleterious(0) benign(0.022) TCGA-HU-A4H8-01 9 14806679 14806679 C T FREM1 Missense_Mutation p.S1085N 0.36 deleterious(0) possibly_damaging(0.873) TCGA-HU-A4H8-01 9 173281 173281 G A CBWD1 Silent p.C109C 0.41 TCGA-HU-A4H8-01 9 20912931 20912931 A - FOCAD Frame_Shift_Del p.S931Afs*11 0.24 TCGA-HU-A4H8-01 9 20944746 20944746 C T FOCAD Silent p.S1176S 0.38 TCGA-HU-A4H8-01 9 2181665 2181665 A - SMARCA2 Frame_Shift_Del p.I1452* 0.33 TCGA-HU-A4H8-01 9 21971132 21971132 C T CDKN2A Missense_Mutation p.A76T 0.37 tolerated(0.4) benign(0.026) TCGA-HU-A4H8-01 9 27212860 27212860 G A TEK Missense_Mutation p.V948M 0.37 deleterious(0) probably_damaging(0.998) TCGA-HU-A4H8-01 9 3293099 3293099 G A RFX3 Nonsense_Mutation p.R237* 0.29 TCGA-HU-A4H8-01 9 33034284 33034286 TAT - DNAJA1 In_Frame_Del p.I241del 0.32 TCGA-HU-A4H8-01 9 35043650 35043650 C - C9orf131 Frame_Shift_Del p.C344Afs*49 0.25 TCGA-HU-A4H8-01 9 35074153 35074153 G T FANCG Silent p.A607A 0.06 TCGA-HU-A4H8-01 9 35711592 35711592 C T TLN1 Silent p.P1293P 0.32 TCGA-HU-A4H8-01 9 36170043 36170043 C T CCIN Missense_Mutation p.R182C 0.40 deleterious(0.01) probably_damaging(0.939) TCGA-HU-A4H8-01 9 4118134 4118134 C T GLIS3 Silent p.P448P 0.45 TCGA-HU-A4H8-01 9 4118413 4118413 G A GLIS3 Silent p.R355R 0.38 TCGA-HU-A4H8-01 9 4118512 4118512 C T GLIS3 Silent p.T322T 0.36 TCGA-HU-A4H8-01 9 69200180 69200180 G A FOXD4L6 3'UTR 0.47 TCGA-HU-A4H8-01 9 71835953 71835953 G - TJP2 Frame_Shift_Del p.R198Afs*144 0.43 TCGA-HU-A4H8-01 9 8341799 8341799 G C PTPRD Missense_Mutation p.T1614S 0.37 tolerated(0.22) possibly_damaging(0.841) TCGA-HU-A4H8-01 9 90321802 90321802 G - DAPK1 Frame_Shift_Del p.Y1275Tfs*31 0.28 TCGA-HU-A4H8-01 9 90535407 90535407 C A SPATA31C1 RNA 0.20 TCGA-HU-A4H8-01 9 91964693 91964693 C T SECISBP2 Missense_Mutation p.P581S 0.18 tolerated(0.18) benign(0.007) TCGA-HU-A4H8-01 9 95077084 95077084 G T NOL8 Missense_Mutation p.P608H 0.43 tolerated(0.22) benign(0.008) TCGA-HU-A4H8-01 9 95481859 95481859 C T BICD2 Silent p.E356E 0.17 TCGA-HU-A4H8-01 9 95599403 95599403 G A ANKRD19P RNA 0.42 TCGA-HU-A4H8-01 9 96051495 96051495 G A WNK2 Missense_Mutation p.G1524R 0.28 unknown(0) TCGA-HU-A4H8-01 9 96422621 96422621 A G PHF2 Missense_Mutation p.T493A 0.15 tolerated(0.64) unknown(0) TCGA-HU-A4H8-01 9 96422642 96422642 C A PHF2 Missense_Mutation p.P500T 0.19 tolerated(0.11) unknown(0) TCGA-HU-A4H8-01 9 98209302 98209302 G A PTCH1 Silent p.P1412P 0.33 TCGA-HU-A4H8-01 9 98729038 98729038 A G ERCC6L2 3'UTR 0.57 TCGA-HU-A4H8-01 9 99694443 99694443 C A NUTM2G Silent p.S152S 0.23 TCGA-HU-A4H8-01 X 102529191 102529191 G A TCEAL5 Missense_Mutation p.R101W 0.67 tolerated(0.07) benign(0.021) TCGA-HU-A4H8-01 X 103220212 103220212 T - TMSB15B 3'UTR 0.32 TCGA-HU-A4H8-01 X 103430850 103430850 G A FAM199X Missense_Mutation p.R174Q 0.64 tolerated(0.31) benign(0.008) TCGA-HU-A4H8-01 X 106845934 106845934 T C FRMPD3 Silent p.P1588P 0.63 TCGA-HU-A4H8-01 X 111090507 111090507 C T TRPC5 Missense_Mutation p.R512H 0.33 deleterious(0) probably_damaging(0.996) TCGA-HU-A4H8-01 X 123526014 123526014 G A TENM1 Missense_Mutation p.T1859M 0.47 deleterious(0) possibly_damaging(0.513) TCGA-HU-A4H8-01 X 12735698 12735698 A G FRMPD4 Missense_Mutation p.E918G 0.07 deleterious(0) probably_damaging(0.999) TCGA-HU-A4H8-01 X 134680317 134680317 T - DDX26B Frame_Shift_Del p.L120* 0.74 TCGA-HU-A4H8-01 X 136649856 136649856 G A ZIC3 Missense_Mutation p.G336R 0.77 deleterious(0.02) benign(0.06) TCGA-HU-A4H8-01 X 137939823 137939823 G - FGF13 Frame_Shift_Del p.P23Lfs*19 0.35 TCGA-HU-A4H8-01 X 148055041 148055041 C T AFF2 Missense_Mutation p.A1103V 0.12 deleterious(0) possibly_damaging(0.846) TCGA-HU-A4H8-01 X 150891237 150891237 C A FATE1 3'UTR 0.45 TCGA-HU-A4H8-01 X 152719895 152719895 G A HAUS7 Silent p.G344G 0.81 TCGA-HU-A4H8-01 X 152853666 152853666 C T FAM58A 3'UTR 0.67 TCGA-HU-A4H8-01 X 153694759 153694759 C T PLXNA3 Missense_Mutation p.A947V 0.08 tolerated(0.43) benign(0.01) TCGA-HU-A4H8-01 X 15682947 15682947 G A TMEM27 5'UTR 0.75 TCGA-HU-A4H8-01 X 17744539 17744539 G A NHS Silent p.A750A 0.66 TCGA-HU-A4H8-01 X 29973926 29973926 G A IL1RAPL1 Missense_Mutation p.V694M 0.54 tolerated_low_confidence(0.14) probably_damaging(0.994) TCGA-HU-A4H8-01 X 40458981 40458981 C T ATP6AP2 Silent p.D242D 0.62 TCGA-HU-A4H8-01 X 50053923 50053923 G C CCNB3 Missense_Mutation p.M918I 0.64 tolerated(0.13) benign(0.199) TCGA-HU-A4H8-01 X 51150755 51150755 C T CXorf67 Missense_Mutation p.A296V 0.82 tolerated(0.07) benign(0.266) TCGA-HU-A4H8-01 X 55513209 55513209 T - USP51 3'UTR 0.58 TCGA-HU-A4H8-01 X 57620306 57620307 TC - ZXDB Frame_Shift_Del p.F611Lfs*2 0.26 TCGA-HU-A4H8-01 X 57936601 57936601 C T ZXDA Missense_Mutation p.G85D 0.64 tolerated_low_confidence(0.08) benign(0.005) TCGA-HU-A4H8-01 X 63412123 63412124 - C AMER1 Frame_Shift_Ins p.Q349Pfs*29 0.08 TCGA-HU-A4H8-01 X 70521660 70521661 TC - ITGB1BP2 Frame_Shift_Del p.L3Tfs*4 0.66 TCGA-HU-A4H8-01 X 70524391 70524391 G A ITGB1BP2 Splice_Site p.X252_splice 0.69 TCGA-HU-A4H8-01 X 77158170 77158170 A G COX7B Missense_Mutation p.Q24R 0.68 tolerated(0.07) benign(0.046) TCGA-HU-A4H8-01 X 77289155 77289155 G T ATP7A Missense_Mutation p.G1116V 0.81 deleterious(0) probably_damaging(1) TCGA-HU-A4H8-01 X 86067899 86067899 G C DACH2 Missense_Mutation p.L427F 0.55 tolerated(0.28) possibly_damaging(0.466) TCGA-HU-A4HB-01 12 108603931 108603931 C T WSCD2 Silent p.A177A 0.09 TCGA-HU-A4HB-01 12 108923993 108923993 T C SART3 Missense_Mutation p.K614R 0.10 tolerated(0.08) benign(0.142) TCGA-HU-A4HB-01 13 101720291 101720291 G C NALCN Missense_Mutation p.N1475K 0.09 deleterious(0) probably_damaging(0.988) TCGA-HU-A4HB-01 19 33498986 33498986 T G RHPN2 Missense_Mutation p.T232P 0.11 deleterious(0.01) probably_damaging(0.961) TCGA-HU-A4HB-01 1 240969581 240969581 T G RGS7 Missense_Mutation p.E376D 0.07 tolerated(0.59) probably_damaging(0.937) TCGA-HU-A4HB-01 20 57429951 57429951 G A GNAS Missense_Mutation p.R544Q 0.17 tolerated_low_confidence(0.52) benign(0.013) TCGA-HU-A4HB-01 20 62592661 62592661 C T ZNF512B Splice_Site p.X809_splice 0.09 TCGA-HU-A4HB-01 22 19961298 19961298 C A ARVCF Missense_Mutation p.A703S 0.08 tolerated(0.15) possibly_damaging(0.594) TCGA-HU-A4HB-01 4 165878722 165878722 T G FAM218A 3'UTR 0.33 TCGA-HU-A4HB-01 5 114611197 114611197 A C CCDC112 Missense_Mutation p.F212V 0.06 tolerated(0.45) benign(0.012) TCGA-HU-A4HB-01 5 135692898 135692898 G A TRPC7 Missense_Mutation p.R60W 0.04 deleterious(0.01) probably_damaging(0.998) TCGA-HU-A4HB-01 6 31765566 31765566 C A LSM2 Missense_Mutation p.A86S 0.04 tolerated(0.4) benign(0.001) TCGA-HU-A4HB-01 8 107719383 107719383 A G OXR1 Intron 0.10 TCGA-HU-A4HD-01 10 106849594 106849594 G T SORCS3 Nonsense_Mutation p.G364* 0.15 TCGA-HU-A4HD-01 10 106907538 106907538 T G SORCS3 Missense_Mutation p.I489S 0.21 deleterious(0.02) benign(0.053) TCGA-HU-A4HD-01 10 118357380 118357380 A T PNLIPRP1 Missense_Mutation p.E205D 0.15 tolerated(0.21) benign(0.018) TCGA-HU-A4HD-01 10 123600613 123600613 C T ATE1 Missense_Mutation p.V381I 0.12 deleterious(0.05) benign(0.045) TCGA-HU-A4HD-01 10 18629818 18629818 C G CACNB2 Intron 0.22 TCGA-HU-A4HD-01 10 27537061 27537061 C T RP11-85G18.6 Intron 0.15 TCGA-HU-A4HD-01 10 48739393 48739393 T C PTPN20B Missense_Mutation p.T398A 0.20 deleterious(0) probably_damaging(0.999) TCGA-HU-A4HD-01 10 5540985 5540985 G T CALML5 Missense_Mutation p.F139L 0.40 deleterious(0.02) probably_damaging(0.999) TCGA-HU-A4HD-01 10 55721598 55721598 G C PCDH15 Missense_Mutation p.P975A 0.14 tolerated(1) benign(0.16) TCGA-HU-A4HD-01 10 67829243 67829243 T G CTNNA3 Missense_Mutation p.K661T 0.14 tolerated(0.16) unknown(0) TCGA-HU-A4HD-01 10 73405660 73405660 G A CDH23 Missense_Mutation p.V405I 0.16 tolerated(0.57) benign(0.02) TCGA-HU-A4HD-01 11 105929644 105929644 C T KBTBD3 Missense_Mutation p.E61K 0.16 tolerated(0.11) benign(0.046) TCGA-HU-A4HD-01 11 113650613 113650613 G T CLDN25 Missense_Mutation p.Q32H 0.26 tolerated(0.62) benign(0.023) TCGA-HU-A4HD-01 11 1264247 1264247 C T MUC5B Missense_Mutation p.A2046V 0.18 unknown(0) TCGA-HU-A4HD-01 11 18955509 18955509 C T MRGPRX1 Missense_Mutation p.V275M 0.42 deleterious(0.03) possibly_damaging(0.45) TCGA-HU-A4HD-01 11 19955484 19955484 C T NAV2 Missense_Mutation p.P588L 0.15 deleterious(0) probably_damaging(0.999) TCGA-HU-A4HD-01 11 31128443 31128443 G T DCDC1 Missense_Mutation p.S551Y 0.18 deleterious(0.03) probably_damaging(0.978) TCGA-HU-A4HD-01 11 40135896 40135897 - T LRRC4C 3'UTR 0.22 TCGA-HU-A4HD-01 11 56127940 56127940 A C OR8J1 Missense_Mutation p.N73T 0.46 tolerated(0.24) benign(0.089) TCGA-HU-A4HD-01 11 58723084 58723084 G A GLYATL1 Missense_Mutation p.E196K 0.55 tolerated(0.47) benign(0.039) TCGA-HU-A4HD-01 11 64564001 64564001 G C MAP4K2 Missense_Mutation p.L533V 0.25 tolerated(0.18) possibly_damaging(0.627) TCGA-HU-A4HD-01 11 6648254 6648254 T C DCHS1 Missense_Mutation p.T2006A 0.17 tolerated(0.14) benign(0.04) TCGA-HU-A4HD-01 11 68201141 68201141 C T LRP5 Missense_Mutation p.R1279C 0.21 deleterious(0) probably_damaging(0.982) TCGA-HU-A4HD-01 11 7111053 7111053 G A RBMXL2 Silent p.S234S 0.21 TCGA-HU-A4HD-01 11 72946448 72946448 G A P2RY2 3'UTR 0.42 TCGA-HU-A4HD-01 11 75188719 75188719 C A GDPD5 Missense_Mutation p.G21V 0.57 deleterious(0) probably_damaging(1) TCGA-HU-A4HD-01 11 77531754 77531754 T C RSF1 Missense_Mutation p.T3A 0.55 tolerated_low_confidence(0.71) unknown(0) TCGA-HU-A4HD-01 11 93471662 93471662 A T TAF1D Missense_Mutation p.D24E 0.39 deleterious(0) probably_damaging(0.996) TCGA-HU-A4HD-01 12 12006418 12006418 T C ETV6 Missense_Mutation p.L129P 0.22 tolerated(0.19) benign(0.017) TCGA-HU-A4HD-01 12 49431844 49431844 G A KMT2D Missense_Mutation p.R3099C 0.31 possibly_damaging(0.895) TCGA-HU-A4HD-01 12 8975820 8975820 C T A2ML1 Silent p.S35S 0.23 TCGA-HU-A4HD-01 13 100635006 100635006 G A ZIC2 Missense_Mutation p.A230T 0.28 tolerated(0.29) possibly_damaging(0.483) TCGA-HU-A4HD-01 13 20632802 20632802 A G ZMYM2 Missense_Mutation p.T861A 0.23 deleterious(0.01) probably_damaging(0.989) TCGA-HU-A4HD-01 13 26789264 26789264 C T RNF6 Missense_Mutation p.R252H 0.32 tolerated(0.22) benign(0.001) TCGA-HU-A4HD-01 13 32367089 32367089 T A RXFP2 Missense_Mutation p.F550L 0.20 tolerated(0.12) benign(0.042) TCGA-HU-A4HD-01 13 33741695 33741695 T G STARD13 Missense_Mutation p.L78F 0.28 deleterious(0.02) benign(0.35) TCGA-HU-A4HD-01 13 37539797 37539797 C G ALG5 Missense_Mutation p.G230R 0.38 deleterious(0.05) benign(0.151) TCGA-HU-A4HD-01 13 42149950 42149950 C G VWA8 Missense_Mutation p.D1766H 0.09 deleterious(0) probably_damaging(0.999) TCGA-HU-A4HD-01 13 60348383 60348383 C A DIAPH3 Splice_Site p.X1087_splice 0.23 TCGA-HU-A4HD-01 13 61985618 61985618 T A PCDH20 Missense_Mutation p.I872F 0.33 tolerated(0.26) possibly_damaging(0.764) TCGA-HU-A4HD-01 13 79175467 79175467 C T POU4F1 3'UTR 0.20 TCGA-HU-A4HD-01 13 84454217 84454217 G T SLITRK1 Missense_Mutation p.L476I 0.16 deleterious(0) probably_damaging(0.943) TCGA-HU-A4HD-01 14 21960818 21960818 C T TOX4 Missense_Mutation p.S348L 0.21 tolerated(0.09) benign(0.037) TCGA-HU-A4HD-01 14 47342743 47342743 G T MDGA2 Missense_Mutation p.A882D 0.31 deleterious(0) probably_damaging(0.999) TCGA-HU-A4HD-01 14 50597407 50597407 C T SOS2 Missense_Mutation p.G1050D 0.32 deleterious(0.02) possibly_damaging(0.889) TCGA-HU-A4HD-01 14 60063391 60063391 T C RTN1 3'UTR 0.29 TCGA-HU-A4HD-01 14 71064347 71064347 A T MED6 Nonsense_Mutation p.L57* 0.17 TCGA-HU-A4HD-01 14 75643284 75643284 G T TMED10 5'UTR 0.34 TCGA-HU-A4HD-01 15 27185160 27185160 C T GABRA5 Silent p.T271T 0.20 TCGA-HU-A4HD-01 15 34649847 34649847 A G NUTM1 3'UTR 0.25 TCGA-HU-A4HD-01 15 40594697 40594697 G A PLCB2 Silent p.F115F 0.19 TCGA-HU-A4HD-01 15 41864735 41864735 C T TYRO3 Silent p.L616L 0.32 TCGA-HU-A4HD-01 15 49448026 49448026 G T COPS2 5'Flank 0.25 TCGA-HU-A4HD-01 15 55841186 55841186 A G PYGO1 Silent p.D19D 0.25 TCGA-HU-A4HD-01 15 65490372 65490372 C T CILP Missense_Mutation p.R751Q 0.25 deleterious(0) probably_damaging(0.99) TCGA-HU-A4HD-01 15 70366884 70366884 G A TLE3 Silent p.N120N 0.58 TCGA-HU-A4HD-01 15 78466820 78466820 G A ACSBG1 Silent p.I583I 0.34 TCGA-HU-A4HD-01 15 86118466 86118467 - CT AKAP13 Frame_Shift_Ins p.E258Lfs*24 0.21 TCGA-HU-A4HD-01 16 1550474 1550474 C T TELO2 Missense_Mutation p.R377W 0.29 deleterious(0.02) benign(0.009) TCGA-HU-A4HD-01 16 30970468 30970468 C T SETD1A Silent p.S69S 0.22 TCGA-HU-A4HD-01 16 3254894 3254894 T G OR1F1 Silent p.A216A 0.24 TCGA-HU-A4HD-01 16 67329237 67329237 C G KCTD19 Silent p.G440G 0.17 TCGA-HU-A4HD-01 16 84224934 84224934 G A ADAD2 Missense_Mutation p.R33Q 0.30 tolerated_low_confidence(0.07) benign(0.008) TCGA-HU-A4HD-01 17 2298252 2298252 C A MNT Missense_Mutation p.Q190H 0.37 tolerated(0.23) possibly_damaging(0.862) TCGA-HU-A4HD-01 17 26096028 26096028 C T NOS2 Missense_Mutation p.R670H 0.22 deleterious(0.01) benign(0.048) TCGA-HU-A4HD-01 17 26862160 26862160 A G FOXN1 Missense_Mutation p.D524G 0.25 deleterious(0) probably_damaging(0.999) TCGA-HU-A4HD-01 17 27013704 27013704 G A SUPT6H Missense_Mutation p.R866H 0.14 tolerated(0.06) possibly_damaging(0.49) TCGA-HU-A4HD-01 17 37863240 37863240 C T ERBB2 Intron 0.31 TCGA-HU-A4HD-01 17 38937500 38937500 T A KRT27 Missense_Mutation p.N156I 0.38 deleterious(0) probably_damaging(1) TCGA-HU-A4HD-01 17 41907404 41907404 C T MPP3 Silent p.P98P 0.16 TCGA-HU-A4HD-01 17 42992741 42992741 G A GFAP Silent p.S38S 0.21 TCGA-HU-A4HD-01 17 48680463 48680463 G A CACNA1G Missense_Mutation p.V1358I 0.18 tolerated(0.7) benign(0.06) TCGA-HU-A4HD-01 17 50008434 50008434 C A CA10 Silent p.R65R 0.20 TCGA-HU-A4HD-01 17 64216736 64216736 C T APOH Missense_Mutation p.M180I 0.29 tolerated(0.06) benign(0.027) TCGA-HU-A4HD-01 17 7579470 7579471 - G TP53 Frame_Shift_Ins p.V73Rfs*76 0.36 TCGA-HU-A4HD-01 17 77924239 77924239 G A TBC1D16 Nonsense_Mutation p.Q410* 0.33 TCGA-HU-A4HD-01 17 78195370 78195370 C T SLC26A11 Missense_Mutation p.S4L 0.20 deleterious_low_confidence(0.01) benign(0.081) TCGA-HU-A4HD-01 18 44560303 44560303 C T TCEB3B Missense_Mutation p.G445S 0.17 tolerated(0.22) possibly_damaging(0.591) TCGA-HU-A4HD-01 18 60243811 60243811 G T ZCCHC2 Nonstop_Mutation p.*1179Lext*3 0.54 TCGA-HU-A4HD-01 18 7231239 7231239 C T LRRC30 Missense_Mutation p.L35F 0.43 tolerated(0.12) possibly_damaging(0.787) TCGA-HU-A4HD-01 19 33167228 33167228 A C RGS9BP Missense_Mutation p.Y20S 0.41 deleterious(0) possibly_damaging(0.711) TCGA-HU-A4HD-01 19 35434618 35434618 C G ZNF30 Missense_Mutation p.H251D 0.11 deleterious(0) probably_damaging(0.991) TCGA-HU-A4HD-01 19 37399305 37399305 G A ZNF829 Silent p.C132C 0.11 TCGA-HU-A4HD-01 19 37904953 37904953 T A ZNF569 Nonsense_Mutation p.R203* 0.10 TCGA-HU-A4HD-01 19 44933411 44933411 A C ZNF229 Missense_Mutation p.H515Q 0.26 deleterious(0) benign(0.026) TCGA-HU-A4HD-01 19 50308972 50308972 G C AP2A1 Missense_Mutation p.K863N 0.38 deleterious(0) probably_damaging(0.944) TCGA-HU-A4HD-01 19 50309020 50309020 G A AP2A1 Nonsense_Mutation p.W879* 0.25 TCGA-HU-A4HD-01 19 50464021 50464021 C A SIGLEC11 Missense_Mutation p.G83V 0.08 deleterious(0.03) benign(0.403) TCGA-HU-A4HD-01 19 50926931 50926931 G T SPIB Missense_Mutation p.D137Y 0.14 deleterious(0.05) possibly_damaging(0.629) TCGA-HU-A4HD-01 19 51532580 51532580 C T KLK12 Intron 0.29 TCGA-HU-A4HD-01 19 8609309 8609309 C T MYO1F Missense_Mutation p.A466T 0.46 deleterious(0.01) possibly_damaging(0.686) TCGA-HU-A4HD-01 19 9046692 9046692 G C MUC16 Missense_Mutation p.P11647A 0.14 benign(0) TCGA-HU-A4HD-01 1 109734025 109734025 G T KIAA1324 Nonsense_Mutation p.E493* 0.30 TCGA-HU-A4HD-01 1 12333123 12333123 G T VPS13D Missense_Mutation p.D723Y 0.19 probably_damaging(0.997) TCGA-HU-A4HD-01 1 149898433 149898433 C T SF3B4 Missense_Mutation p.D181N 0.65 tolerated(0.08) benign(0.325) TCGA-HU-A4HD-01 1 151773365 151773365 G A LINGO4 3'UTR 0.28 TCGA-HU-A4HD-01 1 152281867 152281867 G A FLG Missense_Mutation p.S1832L 0.69 benign(0.32) TCGA-HU-A4HD-01 1 16260458 16260458 C A SPEN Missense_Mutation p.P2575T 0.18 benign(0.05) TCGA-HU-A4HD-01 1 186043953 186043953 C T HMCN1 Silent p.T2740T 0.56 TCGA-HU-A4HD-01 1 186099668 186099668 T G HMCN1 Missense_Mutation p.S4357A 0.08 benign(0.014) TCGA-HU-A4HD-01 1 207287578 207287578 G T C4BPA Missense_Mutation p.Q92H 0.51 tolerated(0.79) benign(0.031) TCGA-HU-A4HD-01 1 216270471 216270471 G T USH2A Missense_Mutation p.A1571E 0.39 possibly_damaging(0.517) TCGA-HU-A4HD-01 1 226253371 226253371 C A H3F3A Missense_Mutation p.A48E 0.71 deleterious_low_confidence(0) probably_damaging(0.924) TCGA-HU-A4HD-01 1 228033682 228033682 G T PRSS38 Nonsense_Mutation p.E252* 0.09 TCGA-HU-A4HD-01 1 2338237 2338237 C T PEX10 Missense_Mutation p.G253E 0.21 tolerated(0.08) benign(0.438) TCGA-HU-A4HD-01 1 27272100 27272100 G A NUDC Silent p.K289K 0.30 TCGA-HU-A4HD-01 1 27720842 27720842 C T GPR3 Silent p.G180G 0.07 TCGA-HU-A4HD-01 1 35906616 35906616 G A KIAA0319L Intron 0.30 TCGA-HU-A4HD-01 1 41013022 41013022 C T ZNF684 Missense_Mutation p.L343F 0.14 deleterious(0.05) benign(0.046) TCGA-HU-A4HD-01 1 85648868 85648868 G A SYDE2 Missense_Mutation p.A486V 0.63 tolerated(0.26) benign(0.004) TCGA-HU-A4HD-01 20 34219269 34219304 AACTCAGCCTGGTGAGGACAGAAAAATTAGGGTAGG - CPNE1 Splice_Site p.X244_splice 0.12 TCGA-HU-A4HD-01 20 55100090 55100090 C G FAM209A Missense_Mutation p.Q76E 0.16 tolerated(0.14) benign(0.04) TCGA-HU-A4HD-01 20 56188170 56188170 G A ZBP1 Intron 0.12 TCGA-HU-A4HD-01 20 57466874 57466874 G A GNAS Intron 0.12 TCGA-HU-A4HD-01 20 6060153 6060153 G C FERMT1 Missense_Mutation p.T597S 0.12 tolerated(0.31) benign(0.033) TCGA-HU-A4HD-01 20 61512061 61512061 C T DIDO1 Silent p.P1749P 0.17 TCGA-HU-A4HD-01 20 62904872 62904872 G A PCMTD2 Silent p.V335V 0.17 TCGA-HU-A4HD-01 21 15579146 15579146 G A LIPI Silent p.C33C 0.57 TCGA-HU-A4HD-01 21 35166671 35166671 A G ITSN1 Silent p.Q617Q 0.16 TCGA-HU-A4HD-01 22 23630318 23630318 G A BCR Missense_Mutation p.R854H 0.26 deleterious(0) possibly_damaging(0.908) TCGA-HU-A4HD-01 22 37769709 37769709 C T ELFN2 Silent p.A622A 0.37 TCGA-HU-A4HD-01 22 38130551 38130551 C T TRIOBP Missense_Mutation p.P1403L 0.27 tolerated_low_confidence(0.2) benign(0.444) TCGA-HU-A4HD-01 22 51159690 51159690 T C SHANK3 Silent p.F1159F 0.36 TCGA-HU-A4HD-01 2 100217913 100217914 - G AFF3 Frame_Shift_Ins p.H477Pfs*8 0.39 TCGA-HU-A4HD-01 2 108489135 108489135 G T RGPD4 Missense_Mutation p.A1559S 0.23 tolerated(0.32) benign(0.403) TCGA-HU-A4HD-01 2 143798210 143798211 - A KYNU Frame_Shift_Ins p.R421Kfs*6 0.22 TCGA-HU-A4HD-01 2 170042037 170042037 C T LRP2 Missense_Mutation p.S3274N 0.27 benign(0.434) TCGA-HU-A4HD-01 2 17698511 17698511 T A RAD51AP2 Missense_Mutation p.K391I 0.24 deleterious(0.01) possibly_damaging(0.748) TCGA-HU-A4HD-01 2 17830854 17830854 G A VSNL1 Missense_Mutation p.G114S 0.43 deleterious(0.01) probably_damaging(1) TCGA-HU-A4HD-01 2 179455023 179455023 C G TTN Missense_Mutation p.E20477Q 0.29 TCGA-HU-A4HD-01 2 179614932 179614932 T G TTN Intron 0.23 TCGA-HU-A4HD-01 2 180047901 180047901 G A SESTD1 Missense_Mutation p.R24W 0.32 deleterious(0) probably_damaging(0.991) TCGA-HU-A4HD-01 2 187359984 187359984 A C ZC3H15 Missense_Mutation p.K34Q 0.22 deleterious(0) probably_damaging(0.95) TCGA-HU-A4HD-01 2 201501705 201501705 G A AOX1 Silent p.A806A 0.19 TCGA-HU-A4HD-01 2 20178532 20178532 A G WDR35 Missense_Mutation p.V139A 0.17 deleterious(0) benign(0.197) TCGA-HU-A4HD-01 2 20178576 20178576 A G WDR35 Silent p.N124N 0.20 TCGA-HU-A4HD-01 2 20178631 20178631 A G WDR35 Missense_Mutation p.I106T 0.21 deleterious(0.01) benign(0.021) TCGA-HU-A4HD-01 2 210557575 210557575 G C MAP2 Silent p.G227G 0.31 TCGA-HU-A4HD-01 2 215593615 215593615 G A BARD1 Missense_Mutation p.P707S 0.29 deleterious(0) probably_damaging(1) TCGA-HU-A4HD-01 2 216259415 216259415 G T FN1 Missense_Mutation p.T1211N 0.33 deleterious(0.01) possibly_damaging(0.587) TCGA-HU-A4HD-01 2 217142568 217142568 G A MARCH4 Missense_Mutation p.T231M 0.21 deleterious(0.03) probably_damaging(0.991) TCGA-HU-A4HD-01 2 218925609 218925609 G A CXCR2P1 RNA 0.19 TCGA-HU-A4HD-01 2 220086872 220086872 G C ATG9A Missense_Mutation p.A682G 0.17 tolerated(0.41) benign(0.003) TCGA-HU-A4HD-01 2 224462279 224462279 C T SCG2 Silent p.P574P 0.27 TCGA-HU-A4HD-01 2 234112803 234112803 A G INPP5D Missense_Mutation p.T991A 0.22 tolerated(0.83) benign(0) TCGA-HU-A4HD-01 2 61238963 61238963 A G PUS10 Silent p.C21C 0.26 TCGA-HU-A4HD-01 2 68415709 68415709 G T PPP3R1 Missense_Mutation p.P53T 0.18 deleterious(0) probably_damaging(1) TCGA-HU-A4HD-01 2 70122244 70122244 C T SNRNP27 Missense_Mutation p.S18F 0.13 deleterious_low_confidence(0.01) unknown(0) TCGA-HU-A4HD-01 3 101520287 101520287 C T NXPE3 Missense_Mutation p.T101I 0.16 deleterious(0) possibly_damaging(0.891) TCGA-HU-A4HD-01 3 122808024 122808024 C T PDIA5 Missense_Mutation p.P18S 0.18 tolerated(0.24) benign(0.158) TCGA-HU-A4HD-01 3 123695732 123695732 C T ROPN1 Silent p.L71L 0.24 TCGA-HU-A4HD-01 3 13672213 13672213 G A FBLN2 Missense_Mutation p.E995K 0.27 tolerated(0.4) possibly_damaging(0.45) TCGA-HU-A4HD-01 3 150290091 150290091 A C EIF2A Silent p.G386G 0.19 TCGA-HU-A4HD-01 3 153840211 153840211 C T ARHGEF26 Silent p.L144L 0.11 TCGA-HU-A4HD-01 3 154866382 154866382 A C MME Missense_Mutation p.N514T 0.19 deleterious(0.04) possibly_damaging(0.799) TCGA-HU-A4HD-01 3 160151539 160151539 A C SMC4 Missense_Mutation p.N1270T 0.24 deleterious(0) probably_damaging(0.93) TCGA-HU-A4HD-01 3 30713756 30713756 C T TGFBR2 Missense_Mutation p.L386F 0.21 deleterious(0) probably_damaging(1) TCGA-HU-A4HD-01 3 52383437 52383437 G A DNAH1 Splice_Site p.X842_splice 0.22 TCGA-HU-A4HD-01 3 62317026 62317026 A G C3orf14 Silent p.L68L 0.12 TCGA-HU-A4HD-01 3 62459960 62459960 G T CADPS Missense_Mutation p.T1122N 0.14 tolerated(0.26) benign(0.403) TCGA-HU-A4HD-01 3 77623795 77623795 T G ROBO2 Missense_Mutation p.V722G 0.25 deleterious(0.01) possibly_damaging(0.888) TCGA-HU-A4HD-01 3 97198188 97198188 A C EPHA6 Missense_Mutation p.N685T 0.16 tolerated(0.64) benign(0.001) TCGA-HU-A4HD-01 3 98188869 98188869 T A OR5K1 Missense_Mutation p.I150K 0.19 deleterious(0) benign(0.443) TCGA-HU-A4HD-01 3 98217288 98217288 T A OR5K2 Missense_Mutation p.I255N 0.14 deleterious(0) possibly_damaging(0.675) TCGA-HU-A4HD-01 4 119154234 119154234 A C NDST3 Missense_Mutation p.K629N 0.22 tolerated(0.18) probably_damaging(0.977) TCGA-HU-A4HD-01 4 183609479 183609479 C T TENM3 Silent p.G732G 0.24 TCGA-HU-A4HD-01 4 3210535 3210535 G T HTT Missense_Mutation p.R2063L 0.33 possibly_damaging(0.896) TCGA-HU-A4HD-01 4 44709717 44709717 A G GNPDA2 Intron 0.38 TCGA-HU-A4HD-01 4 74606394 74606394 G T IL8 Missense_Mutation p.V7L 0.21 tolerated(0.37) benign(0.007) TCGA-HU-A4HD-01 4 99997596 99997596 G A ADH5 Silent p.I224I 0.26 TCGA-HU-A4HD-01 5 1212459 1212459 T G SLC6A19 Missense_Mutation p.F175V 0.43 deleterious(0) probably_damaging(0.911) TCGA-HU-A4HD-01 5 140033632 140033632 C T IK Nonsense_Mutation p.Q172* 0.27 TCGA-HU-A4HD-01 5 140501697 140501697 G A PCDHB4 Silent p.E39E 0.28 TCGA-HU-A4HD-01 5 140856557 140856557 C T PCDHGC3 Missense_Mutation p.R292W 0.21 deleterious(0) possibly_damaging(0.863) TCGA-HU-A4HD-01 5 169101311 169101311 A G DOCK2 Missense_Mutation p.K111R 0.25 tolerated(0.62) benign(0) TCGA-HU-A4HD-01 5 169810667 169810667 C T KCNMB1 Intron 0.21 TCGA-HU-A4HD-01 5 174156283 174156283 C T MSX2 Silent p.L167L 0.25 TCGA-HU-A4HD-01 5 76704759 76704759 C A PDE8B Silent p.V469V 0.20 TCGA-HU-A4HD-01 5 90281206 90281208 GAG - GPR98 In_Frame_Del p.E6007del 0.54 TCGA-HU-A4HD-01 5 9063138 9063138 C G SEMA5A Missense_Mutation p.W793C 0.16 deleterious(0.01) probably_damaging(1) TCGA-HU-A4HD-01 6 102483269 102483269 G T GRIK2 Missense_Mutation p.R713S 0.22 tolerated(0.12) benign(0.148) TCGA-HU-A4HD-01 6 111587791 111587791 T A KIAA1919 Silent p.S342S 0.25 TCGA-HU-A4HD-01 6 133777756 133777756 G A EYA4 Missense_Mutation p.D114N 0.27 deleterious(0.03) probably_damaging(0.998) TCGA-HU-A4HD-01 6 151674697 151674697 C G AKAP12 Missense_Mutation p.T1724S 0.17 tolerated(0.18) benign(0.025) TCGA-HU-A4HD-01 6 26598840 26598840 C T ABT1 Silent p.S262S 0.23 TCGA-HU-A4HD-01 6 42897330 42897330 G A CNPY3 Missense_Mutation p.A8T 0.25 tolerated_low_confidence(0.1) benign(0.012) TCGA-HU-A4HD-01 6 56471811 56471811 G A DST Intron 0.43 TCGA-HU-A4HD-01 6 56492889 56492889 A T DST Missense_Mutation p.W979R 0.19 probably_damaging(1) TCGA-HU-A4HD-01 6 88854325 88854325 G T CNR1 Silent p.A223A 0.65 TCGA-HU-A4HD-01 6 90660506 90660506 T C BACH2 Missense_Mutation p.Q440R 0.17 tolerated(0.97) benign(0.021) TCGA-HU-A4HD-01 6 99842017 99842017 C A COQ3 Missense_Mutation p.W13C 0.21 deleterious_low_confidence(0.01) benign(0.258) TCGA-HU-A4HD-01 7 111509706 111509706 A G DOCK4 Missense_Mutation p.L678P 0.29 deleterious(0) probably_damaging(0.996) TCGA-HU-A4HD-01 7 131128366 131128366 C G MKLN1 Missense_Mutation p.Q434E 0.18 tolerated(0.21) benign(0.001) TCGA-HU-A4HD-01 7 139107133 139107133 G T LUC7L2 3'UTR 0.33 TCGA-HU-A4HD-01 7 142231753 142231753 C G TRBV10-1 Missense_Mutation p.R55P 0.20 deleterious(0) probably_damaging(0.998) TCGA-HU-A4HD-01 7 149489542 149489542 C T SSPO RNA 0.30 TCGA-HU-A4HD-01 7 26233297 26233297 T A HNRNPA2B1 Missense_Mutation p.S259C 0.21 tolerated(0.13) possibly_damaging(0.77) TCGA-HU-A4HD-01 7 33384196 33384196 G C BBS9 Missense_Mutation p.A427P 0.09 deleterious(0.02) benign(0.394) TCGA-HU-A4HD-01 7 34888196 34888196 C A NPSR1 Missense_Mutation p.Q316K 0.22 deleterious(0) probably_damaging(0.972) TCGA-HU-A4HD-01 7 44721435 44721435 C T OGDH Silent p.V441V 0.30 TCGA-HU-A4HD-01 7 45140909 45140909 C T TBRG4 Missense_Mutation p.R581H 0.08 deleterious(0.01) possibly_damaging(0.751) TCGA-HU-A4HD-01 7 5256764 5256764 G A WIPI2 Silent p.A174A 0.18 TCGA-HU-A4HD-01 7 91761090 91761090 T A CYP51A1 Nonsense_Mutation p.K97* 0.33 TCGA-HU-A4HD-01 7 98609873 98609873 C T TRRAP Silent p.L3825L 0.26 TCGA-HU-A4HD-01 8 108306164 108306164 C A ANGPT1 Missense_Mutation p.M346I 0.46 tolerated(0.13) benign(0.17) TCGA-HU-A4HD-01 8 11189026 11189026 T C SLC35G5 Silent p.S137S 0.24 TCGA-HU-A4HD-01 8 114111188 114111188 T G CSMD3 Missense_Mutation p.E238D 0.15 tolerated(0.44) benign(0.321) TCGA-HU-A4HD-01 8 142367549 142367549 G A GPR20 Missense_Mutation p.R159C 0.12 deleterious(0) benign(0.159) TCGA-HU-A4HD-01 8 2088737 2088737 A G MYOM2 Missense_Mutation p.K1298E 0.22 deleterious(0) probably_damaging(0.971) TCGA-HU-A4HD-01 8 22081773 22081773 G A PHYHIP Missense_Mutation p.R142C 0.22 deleterious(0) probably_damaging(0.99) TCGA-HU-A4HD-01 8 28314318 28314318 G C FBXO16 Missense_Mutation p.Q158E 0.28 tolerated(1) benign(0.002) TCGA-HU-A4HD-01 8 41526001 41526001 C T ANK1 Silent p.T1767T 0.26 TCGA-HU-A4HD-01 8 54792024 54792024 G A RGS20 Silent p.P124P 0.16 TCGA-HU-A4HD-01 8 74233246 74233246 G C RDH10 Missense_Mutation p.G235A 0.10 deleterious(0) probably_damaging(0.987) TCGA-HU-A4HD-01 8 77768366 77768366 C A ZFHX4 Missense_Mutation p.A3070D 0.09 possibly_damaging(0.737) TCGA-HU-A4HD-01 8 87455005 87455005 A G WWP1 Missense_Mutation p.M666V 0.15 deleterious(0) probably_damaging(0.998) TCGA-HU-A4HD-01 8 87464854 87464854 T C WWP1 Silent p.F780F 0.09 TCGA-HU-A4HD-01 8 87738794 87738794 C G CNGB3 Missense_Mutation p.Q101H 0.06 tolerated(0.06) benign(0.012) TCGA-HU-A4HD-01 8 88365873 88365873 C T CNBD1 Nonsense_Mutation p.Q388* 0.23 TCGA-HU-A4HD-01 8 96053846 96053846 G A NDUFAF6 Missense_Mutation p.D157N 0.19 deleterious(0.01) benign(0.322) TCGA-HU-A4HD-01 9 105767266 105767266 G A CYLC2 Missense_Mutation p.G118D 0.31 tolerated(0.33) possibly_damaging(0.731) TCGA-HU-A4HD-01 9 111909347 111909347 G A FRRS1L Missense_Mutation p.S200F 0.06 deleterious(0) probably_damaging(0.992) TCGA-HU-A4HD-01 9 119770444 119770444 G A ASTN2 Silent p.T455T 0.42 TCGA-HU-A4HD-01 9 130478445 130478445 G A TTC16 Intron 0.38 TCGA-HU-A4HD-01 9 135156925 135156925 G C SETX Missense_Mutation p.L2195V 0.29 deleterious(0) probably_damaging(0.989) TCGA-HU-A4HD-01 9 27949741 27949741 C T LINGO2 Missense_Mutation p.R310H 0.34 tolerated(0.1) benign(0.002) TCGA-HU-A4HD-01 9 35808791 35808791 G A NPR2 Missense_Mutation p.R976H 0.30 deleterious(0) probably_damaging(1) TCGA-HU-A4HD-01 9 90536009 90536009 C A SPATA31C1 RNA 0.20 TCGA-HU-A4HD-01 9 95040490 95040490 A G IARS Missense_Mutation p.I275T 0.19 deleterious(0) possibly_damaging(0.697) TCGA-HU-A4HD-01 X 11162141 11162141 G C ARHGAP6 Nonsense_Mutation p.S712* 0.38 TCGA-HU-A4HD-01 X 151514087 151514087 G A GABRA3 Silent p.D76D 0.50 TCGA-HU-A4HD-01 X 55478927 55478927 A G MAGEH1 Silent p.V40V 0.30 TCGA-HU-A4HD-01 X 73045171 73045171 A T XIST RNA 0.21 TCGA-IN-7806-01 10 102265860 102265860 C A SEC31B Missense_Mutation p.W327C 0.33 deleterious(0.03) probably_damaging(0.958) TCGA-IN-7806-01 10 50530852 50530852 C A C10orf71 Missense_Mutation p.Q88K 0.37 tolerated(0.18) probably_damaging(0.999) TCGA-IN-7806-01 10 54053711 54053711 C T PRKG1 3'UTR 0.38 TCGA-IN-7806-01 10 6472771 6472771 C A PRKCQ Splice_Site p.X655_splice 0.05 TCGA-IN-7806-01 10 87379661 87379661 G T GRID1 Missense_Mutation p.Q775K 0.36 deleterious(0.02) benign(0.277) TCGA-IN-7806-01 11 103086494 103086494 A G DYNC2H1 Silent p.E2913E 0.17 TCGA-IN-7806-01 11 11373733 11373733 G A CSNK2A3 Missense_Mutation p.R312W 0.26 deleterious(0) probably_damaging(1) TCGA-IN-7806-01 11 5655984 5655984 A G TRIM34 Missense_Mutation p.K215E 0.22 tolerated(0.49) benign(0.028) TCGA-IN-7806-01 11 58949457 58949457 G A DTX4 Missense_Mutation p.V153I 0.39 tolerated(0.48) benign(0.055) TCGA-IN-7806-01 11 64572604 64572604 C A MEN1 Missense_Mutation p.D423Y 0.28 deleterious(0) probably_damaging(1) TCGA-IN-7806-01 11 64575026 64575026 G A MEN1 Nonsense_Mutation p.Q266* 0.22 TCGA-IN-7806-01 11 67191993 67191993 G A CARNS1 Missense_Mutation p.R925H 0.40 deleterious(0) probably_damaging(0.984) TCGA-IN-7806-01 11 73717372 73717372 C G UCP3 Missense_Mutation p.G60A 0.29 deleterious(0.01) probably_damaging(0.991) TCGA-IN-7806-01 11 76893499 76893499 C T MYO7A Missense_Mutation p.R1047C 0.36 deleterious(0) probably_damaging(0.999) TCGA-IN-7806-01 11 99827607 99827607 C - CNTN5 Frame_Shift_Del p.Q249Rfs*23 0.22 TCGA-IN-7806-01 12 112193499 112193499 A C ACAD10 Missense_Mutation p.K1028Q 0.38 deleterious(0) possibly_damaging(0.824) TCGA-IN-7806-01 12 11244154 11244154 T C TAS2R43 Missense_Mutation p.I225M 0.36 deleterious(0) possibly_damaging(0.69) TCGA-IN-7806-01 12 122658467 122658467 C T IL31 Missense_Mutation p.R30H 0.36 tolerated(0.84) benign(0) TCGA-IN-7806-01 12 52387827 52387827 G A ACVR1B Missense_Mutation p.R525H 0.42 deleterious(0) probably_damaging(0.999) TCGA-IN-7806-01 13 20641135 20641135 C T ZMYM2 Silent p.L1093L 0.32 TCGA-IN-7806-01 13 96375503 96375503 C T DNAJC3 Silent p.D67D 0.38 TCGA-IN-7806-01 15 23932370 23932370 C A NDN 5'UTR 0.31 TCGA-IN-7806-01 15 29406154 29406154 G A APBA2 Missense_Mutation p.G705R 0.29 deleterious(0.02) probably_damaging(0.983) TCGA-IN-7806-01 15 44120487 44120487 G T WDR76 Missense_Mutation p.A129S 0.31 tolerated(1) benign(0.001) TCGA-IN-7806-01 15 50534549 50534550 - T HDC Frame_Shift_Ins p.L633Tfs*12 0.23 TCGA-IN-7806-01 15 54630687 54630687 G A UNC13C Silent p.P1571P 0.27 TCGA-IN-7806-01 16 10729625 10729625 A T TEKT5 Missense_Mutation p.L413M 0.28 tolerated(0.13) benign(0.065) TCGA-IN-7806-01 16 50785785 50785785 G A CYLD Missense_Mutation p.E259K 0.22 tolerated(0.22) probably_damaging(0.951) TCGA-IN-7806-01 17 16835804 16835804 C T TBC1D27 RNA 0.28 TCGA-IN-7806-01 17 37264391 37264391 C T PLXDC1 Missense_Mutation p.V193I 0.04 tolerated(0.48) benign(0.028) TCGA-IN-7806-01 17 56665028 56665028 C G TEX14 Splice_Site p.X907_splice 0.24 TCGA-IN-7806-01 17 62049998 62049998 G A SCN4A Silent p.Y68Y 0.50 TCGA-IN-7806-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.42 deleterious(0) probably_damaging(0.997) TCGA-IN-7806-01 17 80046085 80046085 T C FASN Missense_Mutation p.T898A 0.24 tolerated(0.33) benign(0.025) TCGA-IN-7806-01 18 6942154 6942154 A G LAMA1 Missense_Mutation p.V3051A 0.34 tolerated(0.47) benign(0.012) TCGA-IN-7806-01 18 70417340 70417340 T C NETO1 Missense_Mutation p.T500A 0.24 tolerated_low_confidence(0.24) probably_damaging(0.97) TCGA-IN-7806-01 19 10077052 10077052 C A COL5A3 Missense_Mutation p.V1574F 0.24 unknown(0) TCGA-IN-7806-01 19 15233935 15233935 G A ILVBL Silent p.L153L 0.38 TCGA-IN-7806-01 19 36049507 36049507 G T ATP4A Missense_Mutation p.S446Y 0.19 deleterious(0.03) possibly_damaging(0.814) TCGA-IN-7806-01 19 47823124 47823124 T C C5AR1 Silent p.S30S 0.31 TCGA-IN-7806-01 19 50302934 50302934 G T AP2A1 Missense_Mutation p.A395S 0.31 tolerated(1) possibly_damaging(0.599) TCGA-IN-7806-01 19 52272624 52272624 G A FPR2 Missense_Mutation p.R238H 0.28 tolerated(0.1) possibly_damaging(0.458) TCGA-IN-7806-01 1 119427517 119427517 G A TBX15 Silent p.N443N 0.31 TCGA-IN-7806-01 1 13716908 13716908 G A PRAMEF17 Missense_Mutation p.R132K 0.04 tolerated(0.32) benign(0.058) TCGA-IN-7806-01 1 156222291 156222291 G A SMG5 Silent p.I889I 0.48 TCGA-IN-7806-01 1 196748348 196748348 C T CFHR3 Missense_Mutation p.R39C 0.27 tolerated(0.1) benign(0.002) TCGA-IN-7806-01 1 206650166 206650166 G A IKBKE Missense_Mutation p.R229Q 0.38 deleterious(0) possibly_damaging(0.801) TCGA-IN-7806-01 1 237729908 237729908 C T RYR2 Nonsense_Mutation p.R1086* 0.38 TCGA-IN-7806-01 1 237794733 237794733 T A RYR2 Silent p.I2149I 0.40 TCGA-IN-7806-01 20 14306395 14306395 G A FLRT3 Silent p.I586I 0.06 TCGA-IN-7806-01 20 62187465 62187465 G A C20orf195 Missense_Mutation p.R150Q 0.50 tolerated(0.59) benign(0.005) TCGA-IN-7806-01 22 21363235 21363235 C T AC002472.1 5'Flank 0.29 TCGA-IN-7806-01 2 114513058 114513058 T C SLC35F5 Missense_Mutation p.E35G 0.43 deleterious_low_confidence(0.01) benign(0.035) TCGA-IN-7806-01 2 1670198 1670198 G A PXDN Missense_Mutation p.T360M 0.39 deleterious(0.03) probably_damaging(0.982) TCGA-IN-7806-01 2 170099465 170099465 C T LRP2 Splice_Site p.X1223_splice 0.25 TCGA-IN-7806-01 2 179549695 179549695 A G TTN Missense_Mutation p.I10831T 0.21 TCGA-IN-7806-01 2 189933586 189933586 G A COL5A2 Nonsense_Mutation p.R395* 0.29 TCGA-IN-7806-01 2 192194740 192194740 G T MYO1B Nonsense_Mutation p.G111* 0.24 TCGA-IN-7806-01 2 220104395 220104395 C T GLB1L Missense_Mutation p.E264K 0.35 deleterious(0) probably_damaging(1) TCGA-IN-7806-01 2 226446838 226446838 G A NYAP2 Silent p.A235A 0.34 TCGA-IN-7806-01 2 240981279 240981279 T C PRR21 Missense_Mutation p.N374S 0.29 deleterious_low_confidence(0) possibly_damaging(0.801) TCGA-IN-7806-01 2 48025978 48025978 G A MSH6 Missense_Mutation p.E286K 0.26 tolerated(0.07) benign(0.063) TCGA-IN-7806-01 2 70392720 70392720 C T C2orf42 Missense_Mutation p.A398T 0.28 tolerated(0.09) benign(0.011) TCGA-IN-7806-01 3 50324175 50324175 G A LSMEM2 Silent p.P81P 0.05 TCGA-IN-7806-01 4 114257924 114257924 A G ANK2 Silent p.L1261L 0.55 TCGA-IN-7806-01 4 148546061 148546061 T A TMEM184C Missense_Mutation p.L133Q 0.05 deleterious(0) probably_damaging(1) TCGA-IN-7806-01 4 151388910 151388910 T C LRBA Missense_Mutation p.Y2243C 0.25 deleterious(0) probably_damaging(1) TCGA-IN-7806-01 4 41615625 41615625 C T LIMCH1 Missense_Mutation p.S210F 0.37 deleterious(0) probably_damaging(0.998) TCGA-IN-7806-01 4 6107592 6107592 C T JAKMIP1 Missense_Mutation p.E78K 0.56 deleterious(0.04) probably_damaging(0.991) TCGA-IN-7806-01 4 88995977 88995977 G A PKD2 Missense_Mutation p.V846M 0.53 deleterious(0) probably_damaging(0.999) TCGA-IN-7806-01 4 96761778 96761778 T A PDHA2 Nonsense_Mutation p.Y159* 0.47 TCGA-IN-7806-01 6 135784438 135784438 C T AHI1 Silent p.L252L 0.22 TCGA-IN-7806-01 6 26199398 26199398 T G HIST1H2AD Missense_Mutation p.Q25P 0.35 deleterious_low_confidence(0) benign(0.236) TCGA-IN-7806-01 6 33232167 33232167 T C VPS52 Missense_Mutation p.D503G 0.33 deleterious(0.01) probably_damaging(0.992) TCGA-IN-7806-01 6 43197129 43197129 G A DNPH1 Silent p.A22A 0.36 TCGA-IN-7806-01 6 43612845 43612845 G A RSPH9 Missense_Mutation p.D4N 0.37 tolerated(0.34) possibly_damaging(0.741) TCGA-IN-7806-01 6 51882288 51882288 G A PKHD1 Silent p.C1840C 0.38 TCGA-IN-7806-01 7 100684763 100684763 G A MUC17 Missense_Mutation p.E3356K 0.03 benign(0.186) TCGA-IN-7806-01 7 103290823 103290823 G A RELN Nonsense_Mutation p.R634* 0.24 TCGA-IN-7806-01 7 75634686 75634686 C T STYXL1 Missense_Mutation p.V164M 0.05 tolerated(0.24) benign(0.004) TCGA-IN-7806-01 8 105405080 105405080 C A DPYS Missense_Mutation p.D459Y 0.31 tolerated(0.7) benign(0.067) TCGA-IN-7806-01 8 133014029 133014036 TTTTGAAG - EFR3A Frame_Shift_Del p.F728Ifs*6 0.13 TCGA-IN-7806-01 8 3263657 3263657 A T CSMD1 Missense_Mutation p.S720T 0.12 possibly_damaging(0.458) TCGA-IN-7806-01 8 37729256 37729256 C T RAB11FIP1 Missense_Mutation p.V1022I 0.41 deleterious_low_confidence(0.02) benign(0) TCGA-IN-7806-01 8 88885231 88885231 G A DCAF4L2 Silent p.N323N 0.37 TCGA-IN-7806-01 9 111625637 111625637 G A ACTL7A Silent p.K345K 0.36 TCGA-IN-7806-01 9 139262267 139262267 C A CARD9 Missense_Mutation p.R364L 0.13 deleterious(0) possibly_damaging(0.749) TCGA-IN-7806-01 9 139744466 139744466 G A PHPT1 Silent p.A54A 0.23 TCGA-IN-7806-01 9 95009740 95009740 G A IARS Missense_Mutation p.R904C 0.41 deleterious(0) probably_damaging(0.997) TCGA-IN-7806-01 X 138724648 138724648 C A MCF2 Intron 0.70 TCGA-IN-7806-01 X 144906417 144906417 A C SLITRK2 Missense_Mutation p.K825T 0.60 deleterious(0) probably_damaging(0.999) TCGA-IN-7806-01 X 152807375 152807375 G A ATP2B3 Missense_Mutation p.V219I 0.12 tolerated(0.6) benign(0.029) TCGA-IN-7808-01 10 101997883 101997883 C A CWF19L1 Nonsense_Mutation p.E384* 0.15 TCGA-IN-7808-01 10 116698068 116698068 C A TRUB1 Missense_Mutation p.S19Y 0.12 deleterious_low_confidence(0) possibly_damaging(0.608) TCGA-IN-7808-01 10 17199614 17199614 A C TRDMT1 Missense_Mutation p.I238S 0.19 tolerated(0.11) benign(0.043) TCGA-IN-7808-01 10 93244365 93244365 A G HECTD2 Missense_Mutation p.K308R 0.36 tolerated(0.08) benign(0.274) TCGA-IN-7808-01 11 120998499 120998499 G A TECTA Missense_Mutation p.V605M 0.15 deleterious(0.01) benign(0.343) TCGA-IN-7808-01 11 133794727 133794727 C T IGSF9B Missense_Mutation p.V703I 0.14 tolerated(0.06) possibly_damaging(0.458) TCGA-IN-7808-01 11 48510956 48510956 T C OR4A47 Silent p.A204A 0.31 TCGA-IN-7808-01 11 4936857 4936857 C T OR51G2 Missense_Mutation p.V13I 0.10 tolerated(0.35) unknown(0) TCGA-IN-7808-01 11 5152993 5152993 C A OR52A5 Missense_Mutation p.V294F 0.10 deleterious(0) benign(0.327) TCGA-IN-7808-01 11 5275585 5275585 G C HBG2 Silent p.G84G 0.07 TCGA-IN-7808-01 11 55658915 55658915 G A TRIM51 Missense_Mutation p.C389Y 0.19 tolerated(1) benign(0.014) TCGA-IN-7808-01 11 55861250 55861250 C T OR8I2 Missense_Mutation p.S156L 0.12 deleterious(0.01) benign(0.065) TCGA-IN-7808-01 11 639493 639493 G A DRD4 Missense_Mutation p.V116I 0.13 deleterious(0) unknown(0) TCGA-IN-7808-01 12 132635872 132635872 C T NOC4L Silent p.R344R 0.11 TCGA-IN-7808-01 12 133381458 133381458 C G GOLGA3 Missense_Mutation p.E481Q 0.11 deleterious(0.01) benign(0.133) TCGA-IN-7808-01 12 52865203 52865203 A T KRT6C Splice_Site p.X304_splice 0.14 TCGA-IN-7808-01 12 53207428 53207428 C T KRT4 Missense_Mutation p.E139K 0.10 deleterious(0) probably_damaging(0.997) TCGA-IN-7808-01 12 7531888 7531888 G A CD163L1 Missense_Mutation p.S686L 0.20 deleterious(0.03) probably_damaging(0.941) TCGA-IN-7808-01 12 8374923 8374923 G A FAM90A1 Missense_Mutation p.P297L 0.27 deleterious(0.02) benign(0.098) TCGA-IN-7808-01 13 108959245 108959245 G A TNFSF13B Missense_Mutation p.D273N 0.14 tolerated(0.14) benign(0.025) TCGA-IN-7808-01 13 25670716 25670716 C T PABPC3 Missense_Mutation p.S127L 0.27 deleterious(0) probably_damaging(0.999) TCGA-IN-7808-01 13 25745314 25745314 G A AMER2 Silent p.G148G 0.33 TCGA-IN-7808-01 13 43543271 43543271 T A EPSTI1 Missense_Mutation p.Q97L 0.09 deleterious(0.03) probably_damaging(0.983) TCGA-IN-7808-01 14 21024673 21024673 C A RNASE9 Missense_Mutation p.V191L 0.14 tolerated(0.67) benign(0.045) TCGA-IN-7808-01 14 45645901 45645902 - A FANCM Frame_Shift_Ins p.N1317Kfs*2 0.17 TCGA-IN-7808-01 14 52186866 52186866 C T FRMD6 Missense_Mutation p.A373V 0.14 tolerated(0.15) benign(0.006) TCGA-IN-7808-01 14 53560062 53560062 T C DDHD1 Silent p.T371T 0.17 TCGA-IN-7808-01 14 73441486 73441486 C G ZFYVE1 Splice_Site p.X663_splice 0.16 TCGA-IN-7808-01 14 95053780 95053780 G A SERPINA5 Missense_Mutation p.M27I 0.22 tolerated(0.19) benign(0.005) TCGA-IN-7808-01 15 101169989 101169989 G A ASB7 Missense_Mutation p.A187T 0.37 tolerated(0.1) possibly_damaging(0.461) TCGA-IN-7808-01 15 102346572 102346572 C T OR4F6 Missense_Mutation p.S217F 0.07 deleterious_low_confidence(0) possibly_damaging(0.739) TCGA-IN-7808-01 15 56726358 56726358 C T MNS1 Missense_Mutation p.R416H 0.34 tolerated(0.11) benign(0.069) TCGA-IN-7808-01 15 72691142 72691142 T G TMEM202 Missense_Mutation p.L77R 0.14 deleterious(0) probably_damaging(0.925) TCGA-IN-7808-01 15 73996565 73996565 G A CD276 Missense_Mutation p.R374Q 0.36 tolerated(0.18) benign(0.362) TCGA-IN-7808-01 15 79296145 79296145 C G RASGRF1 Missense_Mutation p.Q832H 0.11 tolerated(0.07) benign(0.003) TCGA-IN-7808-01 16 2161261 2161261 C T PKD1 Missense_Mutation p.A1303T 0.36 benign(0.009) TCGA-IN-7808-01 16 5125503 5125503 G A ALG1 Missense_Mutation p.G169S 0.18 tolerated(0.06) probably_damaging(0.995) TCGA-IN-7808-01 16 53321899 53321899 C T CHD9 Silent p.A1740A 0.34 TCGA-IN-7808-01 16 68845649 68845649 G T CDH1 Missense_Mutation p.A299S 0.29 tolerated(0.22) possibly_damaging(0.599) TCGA-IN-7808-01 17 10369949 10369949 G T MYH4 Silent p.V38V 0.37 TCGA-IN-7808-01 17 15989742 15989742 G A NCOR1 Missense_Mutation p.P1011S 0.36 benign(0.092) TCGA-IN-7808-01 17 42931680 42931680 T G EFTUD2 Missense_Mutation p.Q768H 0.08 deleterious(0.01) probably_damaging(0.981) TCGA-IN-7808-01 17 44249491 44249491 C T KANSL1 Missense_Mutation p.A7T 0.11 deleterious(0) unknown(0) TCGA-IN-7808-01 17 45699261 45699261 G T NPEPPS Missense_Mutation p.R912L 0.16 deleterious(0.05) benign(0.062) TCGA-IN-7808-01 17 56270828 56270828 C T EPX Silent p.A89A 0.13 TCGA-IN-7808-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.37 deleterious(0) probably_damaging(1) TCGA-IN-7808-01 18 19110421 19110421 G C ESCO1 Missense_Mutation p.S802R 0.15 deleterious(0.05) possibly_damaging(0.483) TCGA-IN-7808-01 18 22671939 22671939 G T ZNF521 Silent p.T1255T 0.14 TCGA-IN-7808-01 18 28983413 28983413 T C DSG4 Silent p.C484C 0.20 TCGA-IN-7808-01 18 55996338 55996338 G A NEDD4L Silent p.S264S 0.14 TCGA-IN-7808-01 18 7037734 7037734 C G LAMA1 Missense_Mutation p.G527A 0.13 tolerated(0.13) benign(0.208) TCGA-IN-7808-01 19 21132969 21132969 C T ZNF85 Missense_Mutation p.S550F 0.31 tolerated(0.27) benign(0.009) TCGA-IN-7808-01 19 22154592 22154592 C A ZNF208 Nonsense_Mutation p.E1082* 0.31 TCGA-IN-7808-01 19 33628609 33628609 C T WDR88 Silent p.H101H 0.07 TCGA-IN-7808-01 19 33651380 33651380 G A WDR88 Missense_Mutation p.G353D 0.09 deleterious(0.01) probably_damaging(0.992) TCGA-IN-7808-01 19 37118196 37118196 G T ZNF382 Missense_Mutation p.C466F 0.12 deleterious(0) probably_damaging(1) TCGA-IN-7808-01 19 41119862 41119862 C G LTBP4 Silent p.G933G 0.17 TCGA-IN-7808-01 19 42354622 42354622 C A DMRTC2 Missense_Mutation p.T282K 0.10 deleterious(0.04) benign(0.282) TCGA-IN-7808-01 19 42853692 42853692 G A MEGF8 Silent p.T713T 0.12 TCGA-IN-7808-01 19 55284925 55284925 C T KIR2DL1 Missense_Mutation p.R71C 0.10 tolerated(0.15) possibly_damaging(0.853) TCGA-IN-7808-01 19 55450893 55450893 G A NLRP7 Nonsense_Mutation p.R432* 0.13 TCGA-IN-7808-01 19 57036978 57036978 T G ZNF471 Silent p.P514P 0.21 TCGA-IN-7808-01 19 58944765 58944765 A G ZNF132 Silent p.T682T 0.20 TCGA-IN-7808-01 19 6496043 6496043 C T TUBB4A Missense_Mutation p.R156H 0.29 deleterious_low_confidence(0.01) probably_damaging(0.926) TCGA-IN-7808-01 19 8316115 8316115 T A CERS4 Missense_Mutation p.M52K 0.41 deleterious(0) benign(0.028) TCGA-IN-7808-01 19 992107 992107 G A WDR18 Missense_Mutation p.G362S 0.64 tolerated(0.08) benign(0.245) TCGA-IN-7808-01 1 110883915 110883915 C G RBM15 Missense_Mutation p.R630G 0.06 deleterious(0.02) possibly_damaging(0.694) TCGA-IN-7808-01 1 149785222 149785222 C G HIST2H3D Missense_Mutation p.K5N 0.07 deleterious_low_confidence(0.01) benign(0) TCGA-IN-7808-01 1 151338282 151338282 G A SELENBP1 Missense_Mutation p.P295L 0.10 deleterious(0.02) benign(0.062) TCGA-IN-7808-01 1 154542274 154542274 C T CHRNB2 Missense_Mutation p.R73W 0.39 deleterious(0) probably_damaging(0.971) TCGA-IN-7808-01 1 158326399 158326399 C A CD1E Intron 0.10 TCGA-IN-7808-01 1 160062789 160062789 G A IGSF8 Nonsense_Mutation p.R413* 0.14 TCGA-IN-7808-01 1 19203948 19203948 G A ALDH4A1 Missense_Mutation p.R367W 0.50 tolerated(0.17) possibly_damaging(0.901) TCGA-IN-7808-01 1 204401491 204401491 A G PIK3C2B Missense_Mutation p.L1331P 0.23 deleterious(0) probably_damaging(0.949) TCGA-IN-7808-01 1 247921378 247921378 C A OR1C1 Missense_Mutation p.D111Y 0.10 deleterious(0) possibly_damaging(0.829) TCGA-IN-7808-01 1 39919394 39919394 G T MACF1 Missense_Mutation p.V4861L 0.12 probably_damaging(0.998) TCGA-IN-7808-01 1 42047371 42047371 G A HIVEP3 Missense_Mutation p.A1033V 0.22 benign(0.002) TCGA-IN-7808-01 1 47834142 47834143 - AT CMPK1 Frame_Shift_Ins p.G60Mfs*41 0.14 TCGA-IN-7808-01 20 23016224 23016224 C T SSTR4 Missense_Mutation p.A35V 0.08 tolerated(0.08) benign(0.012) TCGA-IN-7808-01 20 2398117 2398117 C T TGM6 Missense_Mutation p.R526W 0.34 deleterious(0.04) benign(0.001) TCGA-IN-7808-01 20 32436452 32436452 T C CHMP4B Splice_Site p.X123_splice 0.11 TCGA-IN-7808-01 20 35128038 35128038 C T DLGAP4 Intron 0.17 TCGA-IN-7808-01 20 55982766 55982766 C T RBM38 Missense_Mutation p.S195L 0.15 deleterious(0) benign(0.086) TCGA-IN-7808-01 20 62591290 62591290 C T ZNF512B Missense_Mutation p.R877Q 0.27 tolerated_low_confidence(0.28) benign(0.009) TCGA-IN-7808-01 22 37331476 37331476 G A CSF2RB Missense_Mutation p.G467R 0.16 deleterious(0) possibly_damaging(0.522) TCGA-IN-7808-01 22 38323469 38323469 C T MICALL1 Missense_Mutation p.S506L 0.17 deleterious(0.04) probably_damaging(0.997) TCGA-IN-7808-01 2 102992506 102992506 A G IL18R1 Missense_Mutation p.N203S 0.27 tolerated(0.14) benign(0.381) TCGA-IN-7808-01 2 179197640 179197640 C T OSBPL6 Nonsense_Mutation p.R177* 0.17 TCGA-IN-7808-01 2 179669352 179669352 C T TTN Silent p.P6P 0.11 TCGA-IN-7808-01 2 27440776 27440776 G T CAD Missense_Mutation p.E38D 0.24 deleterious(0) probably_damaging(0.994) TCGA-IN-7808-01 2 32836620 32836621 - CAT BIRC6 In_Frame_Ins p.T4789_M4790insS 0.09 TCGA-IN-7808-01 2 47657028 47657028 T G MSH2 Nonsense_Mutation p.Y408* 0.20 TCGA-IN-7808-01 3 113376724 113376724 C T KIAA2018 Missense_Mutation p.V1269M 0.11 possibly_damaging(0.453) TCGA-IN-7808-01 3 136096538 136096538 C A STAG1 Missense_Mutation p.Q778H 0.11 tolerated(0.73) benign(0.001) TCGA-IN-7808-01 3 138248265 138248265 G A CEP70 Silent p.N244N 0.20 TCGA-IN-7808-01 3 157920896 157920896 G T RSRC1 Missense_Mutation p.R119L 0.07 deleterious_low_confidence(0.01) unknown(0) TCGA-IN-7808-01 3 180685947 180685947 G A FXR1 Missense_Mutation p.R436H 0.10 deleterious(0.05) probably_damaging(0.912) TCGA-IN-7808-01 3 52443593 52443593 G T BAP1 Nonsense_Mutation p.Y33* 0.29 TCGA-IN-7808-01 3 66436708 66436708 G A LRIG1 Nonsense_Mutation p.Q496* 0.13 TCGA-IN-7808-01 3 97367152 97367152 T G EPHA6 Intron 0.10 TCGA-IN-7808-01 4 113436204 113436204 G A NEUROG2 Missense_Mutation p.P143L 0.07 deleterious(0) probably_damaging(0.999) TCGA-IN-7808-01 4 123192559 123192559 G A KIAA1109 Missense_Mutation p.G2627E 0.17 probably_damaging(0.919) TCGA-IN-7808-01 4 146686173 146686173 T C ZNF827 Missense_Mutation p.K1066R 0.17 tolerated(0.07) probably_damaging(0.996) TCGA-IN-7808-01 4 148463689 148463689 C T EDNRA Silent p.N401N 0.12 TCGA-IN-7808-01 4 170523824 170523824 A T NEK1 5'UTR 0.27 TCGA-IN-7808-01 4 41984892 41984892 C T DCAF4L1 Silent p.D361D 0.15 TCGA-IN-7808-01 4 44450216 44450216 C T KCTD8 Missense_Mutation p.V109M 0.11 deleterious(0) probably_damaging(0.921) TCGA-IN-7808-01 4 680390 680390 G C MFSD7 Nonsense_Mutation p.Y75* 0.15 TCGA-IN-7808-01 5 100147763 100147763 T A ST8SIA4 Nonsense_Mutation p.R290* 0.28 TCGA-IN-7808-01 5 140573656 140573656 G A PCDHB10 Missense_Mutation p.G511S 0.19 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-IN-7808-01 5 140769437 140769437 C T PCDHGB4 Silent p.F662F 0.22 TCGA-IN-7808-01 5 140788444 140788444 C T PCDHGB6 Silent p.T225T 0.28 TCGA-IN-7808-01 5 176468802 176468802 G A ZNF346 Silent p.V101V 0.22 TCGA-IN-7808-01 5 36137532 36137532 G A LMBRD2 Missense_Mutation p.P127L 0.42 deleterious(0) probably_damaging(1) TCGA-IN-7808-01 5 78111859 78111859 G A ARSB Intron 0.26 TCGA-IN-7808-01 6 44376302 44376302 A G CDC5L Missense_Mutation p.N342S 0.15 tolerated(1) benign(0.001) TCGA-IN-7808-01 6 96034725 96034725 A G MANEA Missense_Mutation p.K137R 0.28 tolerated(0.46) benign(0.302) TCGA-IN-7808-01 7 107314680 107314680 G A SLC26A4 Missense_Mutation p.V163I 0.14 tolerated(1) benign(0.001) TCGA-IN-7808-01 7 110603553 110603553 T C IMMP2L Intron 0.18 TCGA-IN-7808-01 7 135304191 135304191 G A NUP205 Silent p.A1328A 0.26 TCGA-IN-7808-01 7 31018824 31018824 C T GHRHR Missense_Mutation p.R413C 0.10 tolerated(0.23) benign(0.004) TCGA-IN-7808-01 7 57529052 57529052 C A ZNF716 Silent p.P295P 0.26 TCGA-IN-7808-01 7 77789453 77789453 C T MAGI2 Missense_Mutation p.A912T 0.05 tolerated(0.36) benign(0.001) TCGA-IN-7808-01 7 82579844 82579844 C A PCLO Missense_Mutation p.D3354Y 0.17 unknown(0) TCGA-IN-7808-01 8 104898126 104898126 T C RIMS2 Silent p.P433P 0.34 TCGA-IN-7808-01 8 133044144 133044144 T G OC90 Silent p.R339R 0.10 TCGA-IN-7808-01 8 16850819 16850819 A G FGF20 Missense_Mutation p.L133P 0.29 deleterious(0) probably_damaging(0.995) TCGA-IN-7808-01 8 99135655 99135655 A T POP1 Missense_Mutation p.R30S 0.09 tolerated(0.41) benign(0.006) TCGA-IN-7808-01 9 111674597 111674597 C T IKBKAP Missense_Mutation p.R379Q 0.07 deleterious(0.04) probably_damaging(0.912) TCGA-IN-7808-01 9 125588916 125588916 C T PDCL Missense_Mutation p.E51K 0.17 tolerated(0.05) possibly_damaging(0.627) TCGA-IN-7808-01 9 133960933 133960933 G T LAMC3 Silent p.R1351R 0.05 TCGA-IN-7808-01 9 74526579 74526587 GAGTAGTTC - C9orf85 5'UTR 0.14 TCGA-IN-7808-01 9 77354315 77354315 T A TRPM6 Missense_Mutation p.Q1846H 0.09 deleterious(0.01) benign(0.079) TCGA-IN-7808-01 9 96864034 96864034 G A PTPDC1 Splice_Site p.X731_splice 0.43 TCGA-IN-7808-01 X 147743964 147743964 C T AFF2 Missense_Mutation p.P239L 0.52 deleterious(0) benign(0.035) TCGA-IN-7808-01 X 15768100 15768100 A - CA5B 5'UTR 0.20 TCGA-IN-8462-01 10 129179558 129179558 T C DOCK1 Missense_Mutation p.C1224R 0.23 tolerated(0.9) possibly_damaging(0.831) TCGA-IN-8462-01 11 115099839 115099839 C A CADM1 Missense_Mutation p.V239L 0.29 deleterious(0.03) probably_damaging(0.985) TCGA-IN-8462-01 11 116661339 116661339 G A APOA5 Silent p.I202I 0.16 TCGA-IN-8462-01 11 120531035 120531035 G A GRIK4 Missense_Mutation p.R3H 0.20 deleterious_low_confidence(0.03) possibly_damaging(0.84) TCGA-IN-8462-01 11 120732714 120732714 A T GRIK4 Missense_Mutation p.N264I 0.52 deleterious(0) possibly_damaging(0.779) TCGA-IN-8462-01 11 1263339 1263339 G C MUC5B Silent p.T1743T 0.26 TCGA-IN-8462-01 11 130297579 130297579 C T ADAMTS8 Silent p.P201P 0.31 TCGA-IN-8462-01 11 56510343 56510343 G T OR9G4 Silent p.A315A 0.30 TCGA-IN-8462-01 11 64037700 64037700 C T BAD Missense_Mutation p.S163N 0.20 deleterious_low_confidence(0.01) benign(0.077) TCGA-IN-8462-01 11 6432394 6432394 G T APBB1 Missense_Mutation p.P62T 0.21 tolerated(0.15) benign(0.032) TCGA-IN-8462-01 11 64360337 64360337 C T SLC22A12 Silent p.C163C 0.24 TCGA-IN-8462-01 12 10374515 10374515 C T GABARAPL1 3'UTR 0.14 TCGA-IN-8462-01 12 108641943 108641943 G T WSCD2 Silent p.L507L 0.31 TCGA-IN-8462-01 12 18491389 18491390 - A PIK3C2G Frame_Shift_Ins p.I437Nfs*19 0.25 TCGA-IN-8462-01 12 22059168 22059169 - T ABCC9 Frame_Shift_Ins p.L504Tfs*25 0.27 TCGA-IN-8462-01 12 41900470 41900470 T A PDZRN4 Silent p.P352P 0.25 TCGA-IN-8462-01 12 52867050 52867050 G A KRT6C Missense_Mutation p.R158W 0.35 deleterious(0.01) benign(0.224) TCGA-IN-8462-01 12 53879109 53879109 G T MAP3K12 Silent p.V324V 0.24 TCGA-IN-8462-01 12 57898029 57898029 C T MARS Nonsense_Mutation p.R439* 0.09 TCGA-IN-8462-01 12 64587770 64587770 C T C12orf66 Missense_Mutation p.R397H 0.25 deleterious(0.04) probably_damaging(0.983) TCGA-IN-8462-01 12 9906054 9906054 C G CD69 3'UTR 0.22 TCGA-IN-8462-01 13 109792648 109792648 G T MYO16 Missense_Mutation p.S1341I 0.37 deleterious(0) possibly_damaging(0.779) TCGA-IN-8462-01 13 24242119 24242119 G T TNFRSF19 Missense_Mutation p.G246V 0.62 deleterious(0) probably_damaging(0.993) TCGA-IN-8462-01 13 98116563 98116563 G T RAP2A Missense_Mutation p.C140F 0.45 deleterious(0) possibly_damaging(0.812) TCGA-IN-8462-01 14 106725392 106725392 T C IGHV3-23 Missense_Mutation p.S54G 0.18 tolerated_low_confidence(0.24) benign(0) TCGA-IN-8462-01 14 30102110 30102110 G A PRKD1 Missense_Mutation p.L453F 0.13 deleterious(0.05) possibly_damaging(0.568) TCGA-IN-8462-01 14 35224069 35224069 G A BAZ1A Missense_Mutation p.R1480C 0.13 deleterious(0) probably_damaging(0.999) TCGA-IN-8462-01 14 42356169 42356169 T G LRFN5 Missense_Mutation p.I114S 0.21 deleterious(0) possibly_damaging(0.868) TCGA-IN-8462-01 14 53251263 53251263 C T GNPNAT1 Missense_Mutation p.G36R 0.10 deleterious(0) benign(0.309) TCGA-IN-8462-01 14 74876050 74876050 T C SYNDIG1L Missense_Mutation p.D133G 0.28 tolerated(0.36) benign(0) TCGA-IN-8462-01 14 77600151 77600151 C - ZDHHC22 Frame_Shift_Del p.V223Wfs*3 0.36 TCGA-IN-8462-01 14 90651110 90651110 C T KCNK13 Silent p.D330D 0.23 TCGA-IN-8462-01 15 25483141 25483141 G A SNORD115-37 RNA 0.26 TCGA-IN-8462-01 15 25483173 25483173 G A SNORD115-37 RNA 0.30 TCGA-IN-8462-01 15 59186099 59186099 A G SLTM Silent p.G523G 0.65 TCGA-IN-8462-01 15 65988761 65988761 C T DENND4A Missense_Mutation p.V1008I 0.19 deleterious(0.02) benign(0.018) TCGA-IN-8462-01 15 69004026 69004026 G A CORO2B Missense_Mutation p.R210H 0.71 deleterious(0.01) probably_damaging(0.994) TCGA-IN-8462-01 15 90164697 90164697 G T TICRR Missense_Mutation p.M1076I 0.29 tolerated(0.28) benign(0.012) TCGA-IN-8462-01 16 20335179 20335179 C A GP2 Missense_Mutation p.R165L 0.26 tolerated(0.1) benign(0.312) TCGA-IN-8462-01 16 2143019 2143019 C A PKD1 Missense_Mutation p.A3698S 0.22 probably_damaging(0.984) TCGA-IN-8462-01 16 323823 323823 C G RGS11 Missense_Mutation p.R148P 0.12 tolerated(0.24) benign(0.214) TCGA-IN-8462-01 16 3724366 3724366 G A TRAP1 Missense_Mutation p.R340C 0.13 deleterious(0.02) possibly_damaging(0.545) TCGA-IN-8462-01 16 5064914 5064914 C T SEC14L5 Silent p.A678A 0.20 TCGA-IN-8462-01 16 58538551 58538551 G T NDRG4 Missense_Mutation p.A176S 0.22 deleterious(0.02) possibly_damaging(0.84) TCGA-IN-8462-01 16 7383068 7383068 T A RBFOX1 Silent p.P22P 0.24 TCGA-IN-8462-01 16 74716642 74716642 A C MLKL Missense_Mutation p.L288R 0.12 tolerated(0.73) benign(0.006) TCGA-IN-8462-01 16 81097557 81097557 C A C16orf46 Missense_Mutation p.D2Y 0.27 deleterious(0) probably_damaging(0.917) TCGA-IN-8462-01 16 89774184 89774184 C G VPS9D1 3'UTR 0.56 TCGA-IN-8462-01 17 20405874 20405874 G A RP11-434D2.7 3'Flank 0.08 TCGA-IN-8462-01 17 39645762 39645762 C T KRT36 Missense_Mutation p.A119T 0.16 tolerated(0.15) benign(0.01) TCGA-IN-8462-01 17 72470705 72470705 G A CD300A Silent p.A138A 0.18 TCGA-IN-8462-01 17 75186883 75186883 A T SEC14L1 Splice_Site p.X22_splice 0.35 TCGA-IN-8462-01 17 7578474 7578475 - G TP53 Frame_Shift_Ins p.P153Afs*28 0.14 TCGA-IN-8462-01 18 39570432 39570432 C T PIK3C3 Nonsense_Mutation p.R210* 0.15 TCGA-IN-8462-01 18 44272196 44272196 C G ST8SIA5 Missense_Mutation p.D83H 0.11 possibly_damaging(0.693) TCGA-IN-8462-01 18 48593393 48593393 C G SMAD4 Missense_Mutation p.H382D 0.30 deleterious(0) probably_damaging(1) TCGA-IN-8462-01 18 70417501 70417501 T G NETO1 Missense_Mutation p.N446T 0.42 tolerated_low_confidence(0.1) benign(0.37) TCGA-IN-8462-01 19 11917976 11917976 G T ZNF491 Missense_Mutation p.R403I 0.18 deleterious(0.02) probably_damaging(0.956) TCGA-IN-8462-01 19 31769087 31769087 G T TSHZ3 Missense_Mutation p.Q538K 0.07 deleterious(0) probably_damaging(0.977) TCGA-IN-8462-01 19 43372161 43372161 G A PSG1 3'UTR 0.23 TCGA-IN-8462-01 19 47593291 47593305 GTCCTCCTTGCCCAT - ZC3H4 In_Frame_Del p.M212_D216del 0.13 TCGA-IN-8462-01 19 49661469 49661469 C A TRPM4 Missense_Mutation p.F15L 0.29 deleterious(0.04) probably_damaging(0.993) TCGA-IN-8462-01 19 50498471 50498471 G A VRK3 Silent p.F247F 0.19 TCGA-IN-8462-01 19 51022345 51022345 G A LRRC4B Silent p.L209L 0.29 TCGA-IN-8462-01 19 52149516 52149516 C A SIGLEC14 Missense_Mutation p.V139L 0.33 deleterious(0.02) possibly_damaging(0.879) TCGA-IN-8462-01 19 52196032 52196032 C T SPACA6P-AS RNA 0.16 TCGA-IN-8462-01 19 54802027 54802027 C T LILRA3 Silent p.V387V 0.18 TCGA-IN-8462-01 19 55396777 55396777 G A FCAR Silent p.T67T 0.28 TCGA-IN-8462-01 19 55421410 55421410 G A NCR1 Missense_Mutation p.D223N 0.21 tolerated(0.2) benign(0.356) TCGA-IN-8462-01 19 8668685 8668685 T C ADAMTS10 Silent p.E173E 0.28 TCGA-IN-8462-01 19 971927 971927 C G ARID3A Missense_Mutation p.N548K 0.09 tolerated(0.44) unknown(0) TCGA-IN-8462-01 1 152283559 152283559 G T FLG Missense_Mutation p.S1268Y 0.24 possibly_damaging(0.86) TCGA-IN-8462-01 1 152286203 152286203 C T FLG Missense_Mutation p.G387S 0.24 possibly_damaging(0.85) TCGA-IN-8462-01 1 156496382 156496382 G T IQGAP3 Missense_Mutation p.Q1598K 0.12 deleterious(0) possibly_damaging(0.885) TCGA-IN-8462-01 1 167874377 167874377 A G ADCY10 Translation_Start_Site p.M1? 0.24 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-IN-8462-01 1 186114580 186114580 G A HMCN1 Missense_Mutation p.R4771Q 0.28 probably_damaging(0.979) TCGA-IN-8462-01 1 19443712 19443712 T A UBR4 Intron 0.29 TCGA-IN-8462-01 1 19612421 19612421 G C AKR7A3 Silent p.L156L 0.22 TCGA-IN-8462-01 1 196749062 196749062 C T CFHR3 Missense_Mutation p.T130M 0.20 tolerated(0.22) benign(0.001) TCGA-IN-8462-01 1 205817084 205817084 G A PM20D1 Missense_Mutation p.P62L 0.27 deleterious(0.01) possibly_damaging(0.852) TCGA-IN-8462-01 1 234743437 234743438 - G IRF2BP2 Frame_Shift_Ins p.T404Hfs*13 0.17 TCGA-IN-8462-01 1 240371492 240371492 C T FMN2 Missense_Mutation p.A1127V 0.22 unknown(0) TCGA-IN-8462-01 1 35370318 35370318 G T DLGAP3 Missense_Mutation p.H223N 0.21 tolerated(0.2) benign(0.221) TCGA-IN-8462-01 1 42925652 42925652 A C PPCS 3'UTR 0.15 TCGA-IN-8462-01 1 43778104 43778104 G A TIE1 Missense_Mutation p.G587R 0.26 tolerated(0.39) possibly_damaging(0.882) TCGA-IN-8462-01 1 47351203 47351203 A T CYP4Z2P RNA 0.20 TCGA-IN-8462-01 1 52861837 52861837 G A ORC1 Missense_Mutation p.S201F 0.24 deleterious(0.01) possibly_damaging(0.738) TCGA-IN-8462-01 1 64643444 64643444 G A ROR1 Missense_Mutation p.G574S 0.21 tolerated(0.14) probably_damaging(1) TCGA-IN-8462-01 1 6653646 6653646 C A KLHL21 Nonsense_Mutation p.E525* 0.16 TCGA-IN-8462-01 1 90050004 90050004 C T LRRC8B Missense_Mutation p.R599C 0.25 deleterious(0) probably_damaging(0.998) TCGA-IN-8462-01 1 92711303 92711303 C G C1orf146 3'UTR 0.46 TCGA-IN-8462-01 20 47895512 47895512 C G ZNFX1 5'Flank 0.23 TCGA-IN-8462-01 22 25153973 25153973 T C PIWIL3 Missense_Mutation p.H86R 0.22 tolerated(0.17) benign(0.001) TCGA-IN-8462-01 22 35463151 35463151 C A ISX Missense_Mutation p.P24Q 0.29 tolerated(0.17) probably_damaging(1) TCGA-IN-8462-01 22 40805237 40805249 CCTGGCCATGTCC - SGSM3 Intron 0.40 TCGA-IN-8462-01 2 138169203 138169203 G A THSD7B Missense_Mutation p.C907Y 0.44 deleterious(0) possibly_damaging(0.588) TCGA-IN-8462-01 2 182542645 182542645 C T NEUROD1 Missense_Mutation p.G315R 0.39 deleterious(0.02) benign(0.232) TCGA-IN-8462-01 2 198948639 198948639 G A PLCL1 Missense_Mutation p.R133H 0.10 deleterious(0) probably_damaging(0.999) TCGA-IN-8462-01 2 212248608 212248608 T G ERBB4 Missense_Mutation p.E1220A 0.08 deleterious(0.04) benign(0.41) TCGA-IN-8462-01 2 220329225 220329225 C T SPEG Missense_Mutation p.R926W 0.39 possibly_damaging(0.901) TCGA-IN-8462-01 2 228566967 228566967 C A SLC19A3 Missense_Mutation p.G23V 0.12 deleterious(0) probably_damaging(1) TCGA-IN-8462-01 2 99944024 99944024 G A TXNDC9 Silent p.C94C 0.11 TCGA-IN-8462-01 3 121228447 121228447 C A POLQ Missense_Mutation p.K640N 0.14 deleterious(0) possibly_damaging(0.903) TCGA-IN-8462-01 3 142031582 142031582 G A XRN1 Missense_Mutation p.S1559L 0.12 tolerated_low_confidence(0.19) benign(0.102) TCGA-IN-8462-01 3 152554180 152554180 C T P2RY1 Silent p.Y203Y 0.54 TCGA-IN-8462-01 3 16475457 16475457 G T RFTN1 Nonsense_Mutation p.S78* 0.30 TCGA-IN-8462-01 3 191107374 191107374 C T CCDC50 Missense_Mutation p.S471L 0.28 tolerated(0.11) benign(0.287) TCGA-IN-8462-01 3 407660 407660 A G CHL1 Missense_Mutation p.K538R 0.16 tolerated(0.29) benign(0.012) TCGA-IN-8462-01 3 51749520 51749520 C T GRM2 Silent p.L577L 0.28 TCGA-IN-8462-01 3 7456790 7456790 T G GRM7 Missense_Mutation p.F372V 0.35 deleterious(0) probably_damaging(0.992) TCGA-IN-8462-01 3 9971770 9971770 C A IL17RC Missense_Mutation p.D476E 0.22 tolerated(0.51) benign(0.005) TCGA-IN-8462-01 5 145838886 145838886 C T TCERG1 Missense_Mutation p.A293V 0.11 tolerated_low_confidence(0.66) unknown(0) TCGA-IN-8462-01 5 162930419 162930419 G A MAT2B 5'Flank 0.08 TCGA-IN-8462-01 5 36679893 36679893 G T SLC1A3 Missense_Mutation p.R342L 0.07 deleterious(0) probably_damaging(0.947) TCGA-IN-8462-01 5 73931384 73931384 C T ENC1 Silent p.K309K 0.10 TCGA-IN-8462-01 5 78338268 78338268 C A DMGDH Missense_Mutation p.R344L 0.11 deleterious(0) probably_damaging(0.998) TCGA-IN-8462-01 6 121401799 121401799 G A TBC1D32 3'Flank 0.21 TCGA-IN-8462-01 6 131948549 131948549 C - MED23 Frame_Shift_Del p.G49Vfs*35 0.19 TCGA-IN-8462-01 6 30890881 30890881 C T VARS2 Missense_Mutation p.A759V 0.17 deleterious(0.01) benign(0.088) TCGA-IN-8462-01 6 31733757 31733757 A G VWA7 Missense_Mutation p.V801A 0.17 tolerated(0.19) benign(0.243) TCGA-IN-8462-01 6 42227349 42227349 G A TRERF1 Missense_Mutation p.P666L 0.16 deleterious(0.02) possibly_damaging(0.726) TCGA-IN-8462-01 6 46135702 46135702 G A ENPP5 Missense_Mutation p.R100W 0.28 deleterious(0.03) possibly_damaging(0.72) TCGA-IN-8462-01 6 56918804 56918804 T C KIAA1586 Missense_Mutation p.Y503H 0.15 tolerated(0.28) possibly_damaging(0.804) TCGA-IN-8462-01 6 72678732 72678732 A G RIMS1 Missense_Mutation p.R71G 0.22 deleterious(0.04) probably_damaging(0.942) TCGA-IN-8462-01 6 86303411 86303411 C G SNX14 Missense_Mutation p.G9A 0.17 tolerated_low_confidence(0.54) benign(0) TCGA-IN-8462-01 7 134889047 134889047 C T WDR91 Silent p.S288S 0.46 TCGA-IN-8462-01 7 138487766 138487766 C A TMEM213 Missense_Mutation p.D92E 0.30 tolerated(0.05) possibly_damaging(0.621) TCGA-IN-8462-01 7 143175728 143175728 G A TAS2R41 Missense_Mutation p.A255T 0.09 tolerated(0.52) benign(0.013) TCGA-IN-8462-01 7 150772385 150772385 G A SLC4A2 Missense_Mutation p.G1031S 0.26 deleterious(0.01) probably_damaging(1) TCGA-IN-8462-01 7 37989889 37989889 C T EPDR1 Missense_Mutation p.T189M 0.22 tolerated(0.05) possibly_damaging(0.496) TCGA-IN-8462-01 7 47343060 47343060 G T TNS3 Missense_Mutation p.S982Y 0.16 deleterious(0.03) possibly_damaging(0.519) TCGA-IN-8462-01 7 48443427 48443427 C A ABCA13 Missense_Mutation p.D4007E 0.14 probably_damaging(0.994) TCGA-IN-8462-01 8 113332148 113332148 C T CSMD3 Missense_Mutation p.D2410N 0.30 tolerated(0.57) probably_damaging(0.928) TCGA-IN-8462-01 8 32505745 32505745 C T NRG1 Intron 0.28 TCGA-IN-8462-01 8 38095671 38095671 G A DDHD2 Missense_Mutation p.G189D 0.25 tolerated(0.21) possibly_damaging(0.889) TCGA-IN-8462-01 8 82392661 82392661 C A FABP4 Missense_Mutation p.K82N 0.06 deleterious(0) probably_damaging(0.983) TCGA-IN-8462-01 8 94746335 94746335 T C RBM12B Silent p.P768P 0.22 TCGA-IN-8462-01 8 94746349 94746349 T G RBM12B Silent p.R764R 0.12 TCGA-IN-8462-01 8 98289373 98289373 G A TSPYL5 Nonsense_Mutation p.R234* 0.20 TCGA-IN-8462-01 9 105767544 105767544 G A CYLC2 Missense_Mutation p.G211R 0.28 tolerated(0.33) unknown(0) TCGA-IN-8462-01 9 113173397 113173397 C T SVEP1 Silent p.T2198T 0.24 TCGA-IN-8462-01 9 131186739 131186739 C T CERCAM Silent p.R204R 0.19 TCGA-IN-8462-01 9 137708924 137708924 G T COL5A1 Missense_Mutation p.R1392M 0.21 unknown(0) TCGA-IN-8462-01 X 119037549 119037549 G A AKAP14 Silent p.S87S 0.62 TCGA-IN-8462-01 X 134426308 134426308 G T ZNF75D Missense_Mutation p.P168Q 0.52 tolerated(0.15) possibly_damaging(0.502) TCGA-IN-8462-01 X 152159886 152159886 C T PNMA5 Missense_Mutation p.G86D 0.53 deleterious(0) probably_damaging(0.984) TCGA-IN-8462-01 X 50085293 50085293 A G CCNB3 Silent p.L1203L 0.61 TCGA-IN-8462-01 X 55513165 55513165 A G USP51 3'UTR 0.62 TCGA-IN-8462-01 X 65483491 65483491 T G HEPH Missense_Mutation p.L1123V 0.50 tolerated(0.65) benign(0.002) TCGA-IN-8462-01 X 66765882 66765882 C T AR Silent p.S298S 0.43 TCGA-IN-8462-01 X 86877278 86877278 T G KLHL4 Missense_Mutation p.L331R 0.68 deleterious(0) probably_damaging(0.99) TCGA-IN-8663-01 10 102505894 102505894 C A PAX2 5'UTR 0.48 TCGA-IN-8663-01 10 117026352 117026352 T C ATRNL1 Silent p.A617A 0.48 TCGA-IN-8663-01 10 16957886 16957886 A G CUBN Missense_Mutation p.F2382L 0.40 tolerated(0.68) benign(0.019) TCGA-IN-8663-01 10 17165609 17165610 - A CUBN Frame_Shift_Ins p.C156Lfs*15 0.26 TCGA-IN-8663-01 10 25861698 25861698 T G GPR158 Silent p.T545T 0.43 TCGA-IN-8663-01 10 27459533 27459533 T A MASTL Missense_Mutation p.L549I 0.45 tolerated(0.09) benign(0.291) TCGA-IN-8663-01 10 30316027 30316027 G C KIAA1462 Missense_Mutation p.A1017G 0.37 tolerated(0.34) benign(0.036) TCGA-IN-8663-01 10 38241394 38241394 A G ZNF25 Silent p.C344C 0.55 TCGA-IN-8663-01 10 38345147 38345147 G A ZNF33A Missense_Mutation p.G699R 0.34 deleterious(0) probably_damaging(0.998) TCGA-IN-8663-01 10 50741012 50741012 C G ERCC6-PGBD3 5'UTR 0.49 TCGA-IN-8663-01 10 70644497 70644497 C G STOX1 Silent p.L315L 0.41 TCGA-IN-8663-01 10 71876494 71876494 T C AIFM2 Missense_Mutation p.N218S 0.45 tolerated(0.05) benign(0.072) TCGA-IN-8663-01 10 78674744 78674744 C T KCNMA1 Missense_Mutation p.R972H 0.41 deleterious(0.05) benign(0.002) TCGA-IN-8663-01 10 81052014 81052014 G A ZMIZ1 Silent p.A286A 0.47 TCGA-IN-8663-01 10 85974024 85974024 C T CDHR1 Missense_Mutation p.R743W 0.28 deleterious_low_confidence(0) probably_damaging(0.941) TCGA-IN-8663-01 11 121986695 121986695 T G BLID 5'UTR 0.24 TCGA-IN-8663-01 11 134214955 134214955 C T GLB1L2 Silent p.I127I 0.45 TCGA-IN-8663-01 11 33886163 33886163 C T LMO2 Missense_Mutation p.R150Q 0.32 tolerated(0.06) benign(0.344) TCGA-IN-8663-01 11 44074565 44074565 T A ACCSL Missense_Mutation p.F299I 0.44 deleterious(0) probably_damaging(0.986) TCGA-IN-8663-01 11 4608534 4608534 A T OR52I2 Missense_Mutation p.R164S 0.40 tolerated(0.26) benign(0.034) TCGA-IN-8663-01 11 5291184 5291184 C T HBE1 5'UTR 0.67 TCGA-IN-8663-01 11 55541187 55541187 A T OR5D13 Nonsense_Mutation p.R92* 0.21 TCGA-IN-8663-01 11 56019837 56019837 A G OR5T3 Silent p.Q54Q 0.24 TCGA-IN-8663-01 11 64055814 64055814 G A GPR137 Silent p.A320A 0.83 TCGA-IN-8663-01 11 88583222 88583222 G T GRM5 Missense_Mutation p.Q255K 0.75 tolerated(1) benign(0.438) TCGA-IN-8663-01 11 89431691 89431691 G T FOLH1B RNA 0.86 TCGA-IN-8663-01 11 89774338 89774338 A C TRIM49C Missense_Mutation p.S327R 0.65 tolerated(0.19) benign(0.01) TCGA-IN-8663-01 12 118105417 118105417 C T KSR2 Missense_Mutation p.V345I 0.37 tolerated(0.55) benign(0.06) TCGA-IN-8663-01 12 132546656 132546656 C T EP400 Missense_Mutation p.T2629M 0.29 possibly_damaging(0.897) TCGA-IN-8663-01 12 25002867 25002867 T G BCAT1 Missense_Mutation p.K188T 0.88 tolerated(0.38) possibly_damaging(0.907) TCGA-IN-8663-01 12 40697927 40697927 A C LRRK2 Missense_Mutation p.K1256N 0.40 deleterious(0.04) possibly_damaging(0.794) TCGA-IN-8663-01 12 4543436 4543436 C T FGF6 Missense_Mutation p.R191Q 0.46 tolerated(0.07) probably_damaging(0.994) TCGA-IN-8663-01 12 49416540 49416540 G A KMT2D Silent p.L5391L 0.35 TCGA-IN-8663-01 12 49729959 49729959 G A C1QL4 Missense_Mutation p.A101V 0.19 tolerated(0.95) benign(0.003) TCGA-IN-8663-01 12 5154932 5154932 G A KCNA5 Missense_Mutation p.G540D 0.49 tolerated(0.47) benign(0.003) TCGA-IN-8663-01 12 66742795 66742795 G A GRIP1 3'UTR 0.42 TCGA-IN-8663-01 12 78443852 78443852 C A NAV3 Silent p.S701S 0.40 TCGA-IN-8663-01 12 86373864 86373864 C A MGAT4C Missense_Mutation p.A214S 0.37 tolerated(0.06) possibly_damaging(0.562) TCGA-IN-8663-01 13 29608101 29608101 C T MTUS2 Missense_Mutation p.S772L 0.46 deleterious(0) probably_damaging(0.998) TCGA-IN-8663-01 13 32527340 32527340 C T EEF1DP3 RNA 0.50 TCGA-IN-8663-01 13 35644947 35644947 A T NBEA Missense_Mutation p.D510V 0.39 deleterious(0) probably_damaging(0.917) TCGA-IN-8663-01 13 38137480 38137480 C T POSTN Missense_Mutation p.R834H 0.22 deleterious_low_confidence(0) benign(0.001) TCGA-IN-8663-01 13 41834883 41834883 C T MTRF1 Missense_Mutation p.S54N 0.25 tolerated(1) benign(0) TCGA-IN-8663-01 13 53420277 53420277 G A PCDH8 Silent p.A765A 0.34 TCGA-IN-8663-01 13 77664288 77664288 G T MYCBP2 Missense_Mutation p.A3455E 0.50 probably_damaging(0.993) TCGA-IN-8663-01 14 105521956 105521956 C T GPR132 5'UTR 0.47 TCGA-IN-8663-01 14 24035439 24035439 G A AP1G2 Intron 0.75 TCGA-IN-8663-01 14 78140045 78140045 C T ALKBH1 3'UTR 0.47 TCGA-IN-8663-01 15 28261279 28261279 C G OCA2 Silent p.V287V 0.42 TCGA-IN-8663-01 15 33261648 33261648 G A FMN1 Missense_Mutation p.R529W 0.45 deleterious(0) unknown(0) TCGA-IN-8663-01 15 41812627 41812627 C T RPAP1 Missense_Mutation p.V1253M 0.37 tolerated(0.07) benign(0.179) TCGA-IN-8663-01 15 52667640 52667640 C A MYO5A Missense_Mutation p.R813L 0.35 deleterious(0.02) benign(0.048) TCGA-IN-8663-01 15 65491108 65491108 G A CILP Missense_Mutation p.R506C 0.43 deleterious(0) probably_damaging(0.997) TCGA-IN-8663-01 15 74032739 74032739 C T C15orf59 Missense_Mutation p.G134E 0.37 tolerated(0.2) benign(0.025) TCGA-IN-8663-01 15 80806710 80806710 C T ARNT2 Missense_Mutation p.H281Y 0.40 deleterious(0) benign(0.152) TCGA-IN-8663-01 15 84539669 84539669 T G ADAMTSL3 Silent p.T306T 0.37 TCGA-IN-8663-01 16 23464352 23464352 G C COG7 5'UTR 0.84 TCGA-IN-8663-01 16 31926651 31926652 - T ZNF267 Frame_Shift_Ins p.N362* 0.37 TCGA-IN-8663-01 16 55909260 55909260 T G CES5A Intron 0.67 TCGA-IN-8663-01 16 66643768 66643768 C T CMTM3 Intron 0.26 TCGA-IN-8663-01 16 77327095 77327095 C T ADAMTS18 Missense_Mutation p.A1023T 0.40 tolerated(0.33) benign(0.005) TCGA-IN-8663-01 17 16470856 16470856 G C ZNF287 Missense_Mutation p.R64G 0.77 deleterious(0) probably_damaging(0.994) TCGA-IN-8663-01 17 37863285 37863285 C T ERBB2 Missense_Mutation p.P39L 0.65 tolerated(0.74) benign(0.002) TCGA-IN-8663-01 17 37880998 37880998 G T ERBB2 Missense_Mutation p.G776V 0.77 deleterious(0.02) probably_damaging(0.996) TCGA-IN-8663-01 17 38922734 38922734 T C KRT26 3'UTR 0.65 TCGA-IN-8663-01 17 40650953 40650953 T C ATP6V0A1 Silent p.I531I 0.75 TCGA-IN-8663-01 17 59946443 59946443 G C INTS2 Missense_Mutation p.L1074V 0.79 deleterious(0) possibly_damaging(0.55) TCGA-IN-8663-01 17 72667650 72667650 C A CTD-2006K23.2 3'Flank 0.61 TCGA-IN-8663-01 17 7689646 7689646 T G DNAH2 Missense_Mutation p.F2112V 0.62 possibly_damaging(0.794) TCGA-IN-8663-01 17 79095778 79095778 G A AATK Missense_Mutation p.A653V 0.40 tolerated(0.21) benign(0.242) TCGA-IN-8663-01 18 180256 180256 G A USP14 Silent p.L107L 0.11 TCGA-IN-8663-01 18 22057602 22057602 T G HRH4 3'UTR 0.38 TCGA-IN-8663-01 18 44559804 44559804 A G TCEB3B Missense_Mutation p.L611P 0.22 deleterious(0) probably_damaging(0.93) TCGA-IN-8663-01 18 47813192 47813192 C T CXXC1 Missense_Mutation p.G14R 0.34 tolerated_low_confidence(0.17) probably_damaging(0.996) TCGA-IN-8663-01 18 50985613 50985613 C T DCC Missense_Mutation p.T1135I 0.24 tolerated(0.27) benign(0.147) TCGA-IN-8663-01 18 6977748 6977748 T C LAMA1 Missense_Mutation p.Q2108R 0.64 tolerated(0.05) benign(0.248) TCGA-IN-8663-01 19 12428746 12428746 G A ZNF563 3'UTR 0.22 TCGA-IN-8663-01 19 1508022 1508022 G C ADAMTSL5 Missense_Mutation p.F192L 0.36 tolerated(0.24) benign(0.02) TCGA-IN-8663-01 19 16590003 16590003 G A CALR3 Missense_Mutation p.S365L 0.34 tolerated(0.32) benign(0.003) TCGA-IN-8663-01 19 17838295 17838295 C G MAP1S Missense_Mutation p.S701C 0.27 deleterious(0) probably_damaging(0.997) TCGA-IN-8663-01 19 18652694 18652694 C T FKBP8 Silent p.G29G 0.50 TCGA-IN-8663-01 19 20295168 20295168 T C ZNF486 Missense_Mutation p.S12P 0.55 tolerated_low_confidence(0.87) benign(0) TCGA-IN-8663-01 19 24269986 24269986 G A ZNF254 5'Flank 0.58 TCGA-IN-8663-01 19 31048108 31048108 T C ZNF536 3'UTR 0.56 TCGA-IN-8663-01 19 39664631 39664631 G A PAK4 Missense_Mutation p.R360H 0.53 deleterious(0) possibly_damaging(0.86) TCGA-IN-8663-01 19 47597703 47597703 C G ZC3H4 Missense_Mutation p.K108N 0.24 possibly_damaging(0.878) TCGA-IN-8663-01 19 50031892 50031892 G A RCN3 Missense_Mutation p.D55N 0.52 deleterious(0) probably_damaging(0.977) TCGA-IN-8663-01 19 51017841 51017841 C T ASPDH 5'Flank 0.23 TCGA-IN-8663-01 19 53644890 53644890 T C ZNF347 Silent p.G398G 0.56 TCGA-IN-8663-01 19 53762323 53762323 C A VN1R2 Missense_Mutation p.T232N 0.43 deleterious(0.04) possibly_damaging(0.798) TCGA-IN-8663-01 19 53770580 53770580 T C VN1R4 Silent p.K113K 0.51 TCGA-IN-8663-01 19 53770593 53770593 A C VN1R4 Missense_Mutation p.V109G 0.47 deleterious(0) possibly_damaging(0.713) TCGA-IN-8663-01 19 54659088 54659090 GAA - CNOT3 In_Frame_Del p.K737del 0.45 TCGA-IN-8663-01 19 54664210 54664210 T C TMC4 Silent p.R688R 0.55 TCGA-IN-8663-01 19 57037314 57037314 T G ZNF471 Silent p.P626P 0.51 TCGA-IN-8663-01 19 57133214 57133214 G T ZNF71 Missense_Mutation p.A187S 0.57 tolerated(0.06) benign(0.113) TCGA-IN-8663-01 19 58385714 58385714 T G ZNF814 Missense_Mutation p.E348D 0.35 tolerated(0.08) benign(0.057) TCGA-IN-8663-01 19 58639918 58639918 T G ZNF329 Missense_Mutation p.N318T 0.32 deleterious(0.03) probably_damaging(0.995) TCGA-IN-8663-01 19 6694539 6694539 C T C3 Silent p.T1019T 0.35 TCGA-IN-8663-01 19 8841424 8841424 T A OR2Z1 Missense_Mutation p.F12I 0.36 deleterious(0) probably_damaging(0.997) TCGA-IN-8663-01 19 9324989 9324989 C T OR7D4 Silent p.P175P 0.33 TCGA-IN-8663-01 1 102302454 102302454 A G OLFM3 Missense_Mutation p.L66P 0.23 deleterious(0) probably_damaging(0.999) TCGA-IN-8663-01 1 109242749 109242749 G T PRPF38B 3'UTR 0.33 TCGA-IN-8663-01 1 142700250 142700250 T G RP11-417J8.6 RNA 0.36 TCGA-IN-8663-01 1 149872091 149872091 C T BOLA1 3'Flank 0.71 TCGA-IN-8663-01 1 151826171 151826171 G A THEM5 5'UTR 0.56 TCGA-IN-8663-01 1 158057634 158057634 G A KIRREL Missense_Mutation p.E251K 0.38 tolerated(0.11) possibly_damaging(0.617) TCGA-IN-8663-01 1 158549035 158549035 A G OR10X1 Missense_Mutation p.S219P 0.49 tolerated(0.06) benign(0.075) TCGA-IN-8663-01 1 175066623 175066623 G A TNN Silent p.P553P 0.39 TCGA-IN-8663-01 1 176905335 176905335 T G ASTN1 Intron 0.13 TCGA-IN-8663-01 1 179544780 179544780 C T NPHS2 Missense_Mutation p.G74S 0.18 tolerated(0.52) benign(0.009) TCGA-IN-8663-01 1 186643502 186643502 G A PTGS2 Missense_Mutation p.R600C 0.36 deleterious_low_confidence(0) possibly_damaging(0.696) TCGA-IN-8663-01 1 190234081 190234081 G A BRINP3 Missense_Mutation p.H178Y 0.42 deleterious(0) probably_damaging(0.996) TCGA-IN-8663-01 1 198719705 198719705 A C PTPRC Silent p.R1053R 0.34 TCGA-IN-8663-01 1 200823978 200823978 G A CAMSAP2 Missense_Mutation p.G1286D 0.25 deleterious(0.02) benign(0.087) TCGA-IN-8663-01 1 21031239 21031239 G A KIF17 Missense_Mutation p.S275L 0.14 deleterious(0) probably_damaging(0.999) TCGA-IN-8663-01 1 226075298 226075298 C T LEFTY1 Missense_Mutation p.V180M 0.27 deleterious(0) probably_damaging(0.988) TCGA-IN-8663-01 1 247752495 247752495 T C OR2G2 Silent p.S278S 0.55 TCGA-IN-8663-01 1 248458004 248458004 T C OR2T12 Missense_Mutation p.S293G 0.56 deleterious(0.02) benign(0.206) TCGA-IN-8663-01 1 248637432 248637432 T G OR2T3 Missense_Mutation p.F261V 0.13 tolerated(0.39) benign(0.001) TCGA-IN-8663-01 1 29641952 29641952 G A PTPRU Missense_Mutation p.G1109D 0.58 deleterious(0.03) probably_damaging(1) TCGA-IN-8663-01 1 43778820 43778820 C T TIE1 Nonsense_Mutation p.R648* 0.43 TCGA-IN-8663-01 1 63282426 63282426 G A ATG4C Missense_Mutation p.R114K 0.22 deleterious(0) probably_damaging(0.999) TCGA-IN-8663-01 1 72400786 72400786 T G NEGR1 Missense_Mutation p.M129L 0.24 tolerated(0.11) benign(0.007) TCGA-IN-8663-01 1 9017326 9017326 G T CA6 Silent p.G130G 0.20 TCGA-IN-8663-01 1 9642545 9642545 G A SLC25A33 Missense_Mutation p.D318N 0.48 tolerated(0.56) benign(0.36) TCGA-IN-8663-01 20 30064147 30064147 C G REM1 5'UTR 0.19 TCGA-IN-8663-01 20 30064401 30064401 C T REM1 Silent p.S51S 0.15 TCGA-IN-8663-01 20 3146889 3146889 G C LZTS3 Missense_Mutation p.P193A 0.22 tolerated(0.16) probably_damaging(0.956) TCGA-IN-8663-01 20 49626407 49626407 C T KCNG1 Missense_Mutation p.A157T 0.32 deleterious(0) benign(0.159) TCGA-IN-8663-01 20 5843951 5843951 C T C20orf196 Missense_Mutation p.R154W 0.23 deleterious(0.01) benign(0.015) TCGA-IN-8663-01 21 31654384 31654384 T G KRTAP24-1 3'UTR 0.67 TCGA-IN-8663-01 21 32410493 32410493 G A KRTAP19-8 3'UTR 0.62 TCGA-IN-8663-01 22 35743071 35743071 C T TOM1 Missense_Mutation p.R451W 0.72 deleterious(0) probably_damaging(1) TCGA-IN-8663-01 22 36624137 36624137 G A APOL2 Silent p.V109V 0.32 TCGA-IN-8663-01 2 108487634 108487634 A C RGPD4 Missense_Mutation p.K1058N 0.23 deleterious(0.01) probably_damaging(0.94) TCGA-IN-8663-01 2 1241710 1241710 T C SNTG2 Missense_Mutation p.L257P 0.38 deleterious(0.02) benign(0.157) TCGA-IN-8663-01 2 170131608 170131608 T G LRP2 Missense_Mutation p.Y638S 0.42 benign(0.184) TCGA-IN-8663-01 2 171700589 171700589 A G GAD1 Missense_Mutation p.M225V 0.27 tolerated(0.06) possibly_damaging(0.591) TCGA-IN-8663-01 2 172690559 172690559 A T SLC25A12 Missense_Mutation p.F253L 0.35 tolerated(0.17) benign(0.029) TCGA-IN-8663-01 2 176995668 176995668 C A HOXD8 Missense_Mutation p.Q192K 0.46 deleterious(0.01) possibly_damaging(0.695) TCGA-IN-8663-01 2 179472135 179472135 T G TTN Missense_Mutation p.E17760D 0.30 TCGA-IN-8663-01 2 180815583 180815583 A C CWC22 Missense_Mutation p.F630V 0.65 deleterious(0) probably_damaging(0.996) TCGA-IN-8663-01 2 198950817 198950817 G A PLCL1 Missense_Mutation p.R859H 0.59 deleterious(0) probably_damaging(0.953) TCGA-IN-8663-01 2 204055113 204055113 G A NBEAL1 Splice_Site p.X2278_splice 0.20 TCGA-IN-8663-01 2 232790333 232790333 G A NPPC Silent p.G61G 0.60 TCGA-IN-8663-01 2 25141312 25141312 G A ADCY3 Missense_Mutation p.T182M 0.22 tolerated(0.1) probably_damaging(0.999) TCGA-IN-8663-01 2 73716933 73716933 G A ALMS1 Missense_Mutation p.R2615Q 0.25 benign(0.013) TCGA-IN-8663-01 3 101390788 101390788 C T ZBTB11 Intron 0.34 TCGA-IN-8663-01 3 123813627 123813627 G A KALRN 5'UTR 0.48 TCGA-IN-8663-01 3 13860421 13860421 G A WNT7A 3'UTR 0.32 TCGA-IN-8663-01 3 147106601 147106601 T C ZIC4 3'UTR 0.25 TCGA-IN-8663-01 3 165503945 165503945 A C BCHE Missense_Mutation p.L558V 0.48 deleterious(0.03) benign(0.001) TCGA-IN-8663-01 3 182631761 182631761 G A ATP11B Missense_Mutation p.C1144Y 0.46 deleterious_low_confidence(0) benign(0.001) TCGA-IN-8663-01 3 182698307 182698307 C T DCUN1D1 5'UTR 0.16 TCGA-IN-8663-01 3 196555280 196555280 C T PAK2 3'UTR 0.26 TCGA-IN-8663-01 3 38651268 38651268 G A SCN5A Silent p.D297D 0.20 TCGA-IN-8663-01 3 38783917 38783917 A C SCN10A Missense_Mutation p.I657M 0.59 tolerated(0.07) benign(0.012) TCGA-IN-8663-01 3 51746690 51746690 G A GRM2 Missense_Mutation p.E218K 0.23 deleterious(0) probably_damaging(1) TCGA-IN-8663-01 3 73108206 73108206 G T PPP4R2 Missense_Mutation p.Q102H 0.53 deleterious(0) probably_damaging(1) TCGA-IN-8663-01 3 74411082 74411082 A C CNTN3 Silent p.S441S 0.23 TCGA-IN-8663-01 3 78649331 78649331 T G ROBO1 Silent p.R1625R 0.55 TCGA-IN-8663-01 4 1316182 1316182 T C MAEA Missense_Mutation p.I157T 0.37 deleterious(0.03) benign(0.212) TCGA-IN-8663-01 4 144940451 144940451 T C GYPB 5'UTR 0.19 TCGA-IN-8663-01 4 147724808 147724808 A C TTC29 Missense_Mutation p.F377L 0.85 deleterious(0.01) probably_damaging(0.966) TCGA-IN-8663-01 4 189012589 189012589 T G TRIML2 Missense_Mutation p.S368R 0.81 deleterious(0) possibly_damaging(0.776) TCGA-IN-8663-01 4 73148877 73148877 T G ADAMTS3 Silent p.T1198T 0.22 TCGA-IN-8663-01 4 7436039 7436039 G A PSAPL1 Nonsense_Mutation p.Q190* 0.35 TCGA-IN-8663-01 4 89912001 89912001 T C FAM13A Intron 0.83 TCGA-IN-8663-01 4 90849051 90849051 A C MMRN1 Missense_Mutation p.N354T 0.37 tolerated(0.45) benign(0.01) TCGA-IN-8663-01 5 140572774 140572774 G A PCDHB10 Missense_Mutation p.G217S 0.77 deleterious_low_confidence(0.01) possibly_damaging(0.602) TCGA-IN-8663-01 5 16701398 16701398 T G MYO10 Missense_Mutation p.M1036L 0.27 tolerated_low_confidence(0.63) benign(0.004) TCGA-IN-8663-01 5 19503122 19503122 A C CDH18 Missense_Mutation p.F537V 0.47 deleterious(0.01) probably_damaging(0.998) TCGA-IN-8663-01 5 33891855 33891855 C T ADAMTS12 Missense_Mutation p.R36H 0.21 tolerated_low_confidence(0.57) benign(0.001) TCGA-IN-8663-01 5 35807336 35807336 A G SPEF2 Missense_Mutation p.Y1787C 0.53 tolerated(0.27) probably_damaging(0.999) TCGA-IN-8663-01 5 37198821 37198821 T G C5orf42 Silent p.R1219R 0.22 TCGA-IN-8663-01 5 68513626 68513626 G C MRPS36 5'UTR 0.93 TCGA-IN-8663-01 6 159460087 159460087 T G TAGAP Intron 0.50 TCGA-IN-8663-01 6 160485874 160485874 G C IGF2R Missense_Mutation p.L1352F 0.36 deleterious(0.01) benign(0.314) TCGA-IN-8663-01 6 28227881 28227882 - A NKAPL Frame_Shift_Ins p.E247Rfs*4 0.31 TCGA-IN-8663-01 6 29323005 29323005 G A OR5V1 3'Flank 0.47 TCGA-IN-8663-01 6 30652350 30652350 A C PPP1R18 Silent p.P482P 0.50 TCGA-IN-8663-01 6 38834386 38834386 G A DNAH8 Missense_Mutation p.R1956H 0.27 probably_damaging(1) TCGA-IN-8663-01 6 401485 401485 C T IRF4 Silent p.S269S 0.48 TCGA-IN-8663-01 6 87725376 87725376 C A HTR1E Nonsense_Mutation p.C108* 0.54 TCGA-IN-8663-01 6 89816961 89816961 G A SRSF12 Missense_Mutation p.R28C 0.48 deleterious(0.03) probably_damaging(0.964) TCGA-IN-8663-01 7 100204069 100204069 C A PCOLCE Silent p.L252L 0.21 TCGA-IN-8663-01 7 107341590 107341590 G A SLC26A4 Silent p.A584A 0.80 TCGA-IN-8663-01 7 113519745 113519745 T C PPP1R3A Missense_Mutation p.K468E 0.69 tolerated(0.55) benign(0.006) TCGA-IN-8663-01 7 119915642 119915642 G A KCND2 Missense_Mutation p.S319N 0.86 tolerated(0.06) probably_damaging(0.995) TCGA-IN-8663-01 7 128494716 128494716 G A FLNC Missense_Mutation p.R2326Q 0.53 tolerated(0.15) benign(0.035) TCGA-IN-8663-01 7 23313914 23313914 C A GPNMB 3'UTR 0.25 TCGA-IN-8663-01 7 23313940 23313940 A T GPNMB 3'UTR 0.29 TCGA-IN-8663-01 7 4014046 4014046 G A SDK1 Silent p.T621T 0.51 TCGA-IN-8663-01 7 63538390 63538390 T A ZNF727 Missense_Mutation p.F321L 0.41 deleterious(0) probably_damaging(0.97) TCGA-IN-8663-01 7 77885499 77885499 A G MAGI2 Missense_Mutation p.L603P 0.43 deleterious(0) probably_damaging(0.926) TCGA-IN-8663-01 7 82582248 82582248 A G PCLO Missense_Mutation p.V2674A 0.33 unknown(0) TCGA-IN-8663-01 7 82584865 82584865 T C PCLO Missense_Mutation p.S1802G 0.48 unknown(0) TCGA-IN-8663-01 7 92760645 92760645 G T SAMD9L Missense_Mutation p.P1547Q 0.71 deleterious(0.01) possibly_damaging(0.797) TCGA-IN-8663-01 7 98574180 98574180 G A TRRAP Silent p.A2671A 0.43 TCGA-IN-8663-01 8 105436539 105436539 T C DPYS Missense_Mutation p.R391G 0.37 deleterious(0) benign(0.183) TCGA-IN-8663-01 8 106813482 106813482 T G ZFPM2 Missense_Mutation p.L391R 0.10 tolerated(0.06) possibly_damaging(0.534) TCGA-IN-8663-01 8 110592127 110592127 T G SYBU Missense_Mutation p.Q212P 0.22 tolerated(0.21) benign(0.015) TCGA-IN-8663-01 8 113933891 113933891 A C CSMD3 Missense_Mutation p.F533C 0.53 deleterious(0.04) probably_damaging(0.992) TCGA-IN-8663-01 8 116426893 116426893 T C TRPS1 Missense_Mutation p.I1081M 0.38 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-IN-8663-01 8 30938648 30938648 C T WRN Nonsense_Mutation p.R369* 0.71 TCGA-IN-8663-01 8 31498085 31498085 C T NRG1 Silent p.S48S 0.48 TCGA-IN-8663-01 8 67577705 67577705 T C VCPIP1 Missense_Mutation p.S497G 0.55 tolerated(0.14) benign(0) TCGA-IN-8663-01 8 69017605 69017605 C A PREX2 Intron 0.09 TCGA-IN-8663-01 8 70981763 70981763 C A PRDM14 Silent p.V111V 0.21 TCGA-IN-8663-01 8 73480224 73480224 C G KCNB2 Missense_Mutation p.N85K 0.48 tolerated(0.11) possibly_damaging(0.862) TCGA-IN-8663-01 8 88296940 88296940 T G CNBD1 Missense_Mutation p.V269G 0.71 tolerated(0.19) benign(0.355) TCGA-IN-8663-01 9 113550077 113550077 T C MUSK Missense_Mutation p.L629P 0.44 deleterious(0) probably_damaging(0.995) TCGA-IN-8663-01 9 131329241 131329241 C G SPTAN1 Missense_Mutation p.D74E 0.33 tolerated(0.17) benign(0.163) TCGA-IN-8663-01 9 133738348 133738348 G A ABL1 Missense_Mutation p.G269R 0.42 deleterious(0) probably_damaging(1) TCGA-IN-8663-01 9 136501612 136501612 C T DBH Missense_Mutation p.S40L 0.33 tolerated(0.4) benign(0.004) TCGA-IN-8663-01 9 21971000 21971000 C A CDKN2A Nonsense_Mutation p.E120* 0.43 TCGA-IN-8663-01 9 32784496 32784496 G A TMEM215 Silent p.K105K 0.33 TCGA-IN-8663-01 9 8389280 8389280 T C PTPRD Silent p.Q1446Q 0.46 TCGA-IN-8663-01 9 97369109 97369109 C T FBP1 Silent p.K231K 0.39 TCGA-IN-8663-01 9 98278884 98278887 CTTC - RP11-435O5.4 3'Flank 0.48 TCGA-IN-8663-01 X 105190451 105190451 A C NRK Missense_Mutation p.K1451Q 0.85 deleterious(0.02) benign(0.016) TCGA-IN-8663-01 X 130407546 130407546 G A IGSF1 3'UTR 0.96 TCGA-IN-8663-01 X 137939672 137939672 A C FGF13 Splice_Site p.X73_splice 0.04 TCGA-IN-8663-01 X 142596856 142596856 G T SPANXN3 Missense_Mutation p.Q72K 0.91 deleterious(0.04) probably_damaging(0.951) TCGA-IN-8663-01 X 147743836 147743836 C A AFF2 Missense_Mutation p.F196L 0.95 tolerated(1) benign(0.001) TCGA-IN-8663-01 X 153592921 153592921 G A FLNA Silent p.D665D 0.88 TCGA-IN-8663-01 X 18352182 18352182 T G SCML2 Missense_Mutation p.T4P 0.88 deleterious(0.05) possibly_damaging(0.776) TCGA-IN-8663-01 X 30261268 30261268 C T MAGEB4 Missense_Mutation p.S339F 0.86 tolerated(0.21) unknown(0) TCGA-IN-8663-01 X 69255619 69255619 G T EDA 3'UTR 0.75 TCGA-IN-8663-01 X 77155029 77155029 C T COX7B 5'UTR 0.75 TCGA-IN-8663-01 X 86877393 86877393 T G KLHL4 Silent p.S369S 0.88 TCGA-IN-8663-01 X 92927344 92927344 C T NAP1L3 Silent p.K320K 0.86 TCGA-IN-A6RI-01 10 131639252 131639252 C T EBF3 Missense_Mutation p.V464I 0.19 tolerated_low_confidence(0.19) benign(0.001) TCGA-IN-A6RI-01 10 60546814 60546814 G A BICC1 Silent p.R173R 0.37 TCGA-IN-A6RI-01 10 63817033 63817033 G A ARID5B Missense_Mutation p.R335K 0.53 deleterious(0.01) probably_damaging(0.931) TCGA-IN-A6RI-01 10 73485245 73485245 C T CDH23 Missense_Mutation p.H1188Y 0.16 tolerated(0.81) benign(0.218) TCGA-IN-A6RI-01 10 79784760 79784760 T C POLR3A Silent p.K153K 0.48 TCGA-IN-A6RI-01 11 122678832 122678832 T C UBASH3B Missense_Mutation p.L587P 0.07 deleterious(0) probably_damaging(0.949) TCGA-IN-A6RI-01 11 24927590 24927590 C T LUZP2 Silent p.H150H 0.08 TCGA-IN-A6RI-01 11 30915806 30915806 T G DCDC1 Silent p.R1628R 0.19 TCGA-IN-A6RI-01 11 5462106 5462106 T C OR51I1 Silent p.S213S 0.47 TCGA-IN-A6RI-01 11 55110866 55110866 T A OR4A16 Missense_Mutation p.L64M 0.04 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-IN-A6RI-01 11 55405981 55405981 A G OR4P4 Missense_Mutation p.T50A 0.69 deleterious(0) benign(0.04) TCGA-IN-A6RI-01 11 64390363 64390363 G A NRXN2 Silent p.S1345S 0.43 TCGA-IN-A6RI-01 11 78383110 78383110 C G TENM4 Missense_Mutation p.G1921R 0.37 deleterious(0) possibly_damaging(0.53) TCGA-IN-A6RI-01 11 83180246 83180246 T G DLG2 Silent p.R873R 0.04 TCGA-IN-A6RI-01 11 95826033 95826033 C T MAML2 Missense_Mutation p.G388S 0.22 possibly_damaging(0.813) TCGA-IN-A6RI-01 12 21487701 21487701 T G SLCO1A2 Intron 0.20 TCGA-IN-A6RI-01 12 45822905 45822905 G A ANO6 Silent p.V869V 0.28 TCGA-IN-A6RI-01 12 5154187 5154187 C T KCNA5 Missense_Mutation p.P292S 0.08 tolerated(0.75) benign(0.009) TCGA-IN-A6RI-01 12 5724441 5724441 A G ANO2 Silent p.T613T 0.43 TCGA-IN-A6RI-01 12 64825385 64825385 G A XPOT Missense_Mutation p.D682N 0.43 deleterious(0.01) benign(0.004) TCGA-IN-A6RI-01 12 78511871 78511871 A G NAV3 Missense_Mutation p.K945R 0.36 tolerated(0.06) probably_damaging(0.998) TCGA-IN-A6RI-01 12 81205324 81205324 G A LIN7A Missense_Mutation p.R208C 0.24 deleterious_low_confidence(0.05) benign(0) TCGA-IN-A6RI-01 12 81472136 81472136 A C ACSS3 Missense_Mutation p.K79N 0.34 deleterious(0.04) benign(0.112) TCGA-IN-A6RI-01 12 9317804 9317804 G A PZP Silent p.Y806Y 0.26 TCGA-IN-A6RI-01 13 101735176 101735176 A G NALCN Missense_Mutation p.F1250S 0.67 deleterious(0) benign(0.18) TCGA-IN-A6RI-01 13 24871640 24871640 G A SPATA13 Missense_Mutation p.R1117H 0.05 deleterious(0.02) probably_damaging(0.968) TCGA-IN-A6RI-01 13 36776025 36776025 T G SOHLH2 Missense_Mutation p.K162T 0.65 deleterious(0) benign(0.147) TCGA-IN-A6RI-01 13 38158874 38158874 G T POSTN Missense_Mutation p.Q363K 0.67 tolerated(0.14) benign(0.005) TCGA-IN-A6RI-01 13 86368164 86368164 A C SLITRK6 Nonsense_Mutation p.L827* 0.68 TCGA-IN-A6RI-01 14 26917982 26917982 A C NOVA1 Missense_Mutation p.L236R 0.18 deleterious(0.01) unknown(0) TCGA-IN-A6RI-01 14 91757380 91757380 T G CCDC88C Missense_Mutation p.K1387N 0.26 deleterious(0) probably_damaging(0.999) TCGA-IN-A6RI-01 15 23811021 23811021 A C MKRN3 Missense_Mutation p.D31A 0.47 tolerated(0.35) benign(0) TCGA-IN-A6RI-01 15 41805199 41805199 G A LTK Missense_Mutation p.P55S 0.67 deleterious_low_confidence(0.04) probably_damaging(0.994) TCGA-IN-A6RI-01 15 53957776 53957776 G A WDR72 Missense_Mutation p.S652L 0.28 tolerated(0.07) benign(0.013) TCGA-IN-A6RI-01 15 90281346 90281346 G A WDR93 Missense_Mutation p.A614T 0.55 tolerated(0.62) benign(0.046) TCGA-IN-A6RI-01 16 2096247 2096247 C T NTHL1 Nonsense_Mutation p.W87* 0.31 TCGA-IN-A6RI-01 16 3191192 3191192 G C ZNF213 Missense_Mutation p.K408N 0.31 deleterious(0) possibly_damaging(0.554) TCGA-IN-A6RI-01 16 4311805 4311805 G A TFAP4 Missense_Mutation p.S167L 0.37 deleterious(0.05) benign(0.056) TCGA-IN-A6RI-01 16 64981960 64981960 T C CDH11 Missense_Mutation p.E646G 0.56 tolerated(0.09) probably_damaging(0.998) TCGA-IN-A6RI-01 16 68718524 68718524 C T CDH3 Silent p.Y407Y 0.59 TCGA-IN-A6RI-01 17 10404059 10404059 T A MYH1 Missense_Mutation p.E1250V 0.65 deleterious(0) probably_damaging(1) TCGA-IN-A6RI-01 17 10443928 10443928 C T MYH2 Missense_Mutation p.E331K 0.54 deleterious(0) benign(0.285) TCGA-IN-A6RI-01 17 3119443 3119443 T G OR1A1 Missense_Mutation p.F177V 0.53 deleterious(0.01) probably_damaging(1) TCGA-IN-A6RI-01 17 51900905 51900905 C T KIF2B Nonsense_Mutation p.R171* 0.33 TCGA-IN-A6RI-01 17 7554837 7554837 A T ATP1B2 Translation_Start_Site p.M1? 0.56 deleterious(0) probably_damaging(0.956) TCGA-IN-A6RI-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.62 tolerated(0.11) benign(0.308) TCGA-IN-A6RI-01 18 30928930 30928930 A C CCDC178 Silent p.T127T 0.45 TCGA-IN-A6RI-01 18 59157714 59157714 T G CDH20 5'UTR 0.46 TCGA-IN-A6RI-01 19 10262102 10262102 C T DNMT1 Missense_Mutation p.R746H 0.20 deleterious(0.01) possibly_damaging(0.62) TCGA-IN-A6RI-01 19 57133949 57133949 C T ZNF71 Missense_Mutation p.H432Y 0.57 deleterious(0) probably_damaging(0.99) TCGA-IN-A6RI-01 19 57646367 57646367 A C ZIM3 Silent p.P446P 0.55 TCGA-IN-A6RI-01 19 57802484 57802484 G A ZNF460 Missense_Mutation p.R192H 0.08 deleterious(0.01) benign(0.329) TCGA-IN-A6RI-01 1 104117873 104117873 C T AMY2B Missense_Mutation p.P303S 0.21 tolerated(0.14) benign(0.07) TCGA-IN-A6RI-01 1 115829231 115829231 G A NGF Silent p.R62R 0.37 TCGA-IN-A6RI-01 1 152770271 152770271 A T LCE1D Translation_Start_Site p.M1? 0.08 unknown(0) TCGA-IN-A6RI-01 1 154920838 154920838 C G PBXIP1 Missense_Mutation p.W138C 0.25 tolerated(0.09) probably_damaging(0.955) TCGA-IN-A6RI-01 1 158815433 158815433 C T MNDA Silent p.N209N 0.25 TCGA-IN-A6RI-01 1 1669783 1669783 C T SLC35E2 Missense_Mutation p.R188Q 0.17 tolerated(0.05) probably_damaging(0.99) TCGA-IN-A6RI-01 1 167793761 167793761 A G ADCY10 Silent p.H1335H 0.29 TCGA-IN-A6RI-01 1 16810948 16810948 C T CROCCP3 RNA 0.44 TCGA-IN-A6RI-01 1 173506126 173506126 C T SLC9C2 Missense_Mutation p.R537Q 0.28 tolerated(0.38) benign(0.207) TCGA-IN-A6RI-01 1 183111690 183111690 T C LAMC1 Missense_Mutation p.L1532P 0.10 tolerated(0.28) possibly_damaging(0.779) TCGA-IN-A6RI-01 1 192153718 192153718 T G RGS18 3'UTR 0.35 TCGA-IN-A6RI-01 1 214507652 214507652 G T SMYD2 Splice_Site p.X407_splice 0.34 TCGA-IN-A6RI-01 1 231334899 231334899 G A TRIM67 Missense_Mutation p.R416K 0.37 tolerated(0.52) benign(0.002) TCGA-IN-A6RI-01 1 247769153 247769153 A C OR2G3 Missense_Mutation p.K89T 0.30 tolerated(0.1) benign(0) TCGA-IN-A6RI-01 1 45223595 45223595 C T KIF2C Missense_Mutation p.L362F 0.04 tolerated(1) benign(0.008) TCGA-IN-A6RI-01 1 65303751 65303751 G T JAK1 Silent p.R1002R 0.06 TCGA-IN-A6RI-01 1 6586797 6586797 C T NOL9 Missense_Mutation p.V640I 0.40 tolerated(0.56) benign(0.182) TCGA-IN-A6RI-01 1 70501851 70501851 C G LRRC7 Missense_Mutation p.H643Q 0.05 deleterious(0) benign(0.118) TCGA-IN-A6RI-01 1 70504189 70504189 C T LRRC7 Silent p.T856T 0.34 TCGA-IN-A6RI-01 1 75708644 75708644 A T SLC44A5 Missense_Mutation p.L133H 0.06 tolerated(0.29) benign(0.261) TCGA-IN-A6RI-01 1 82456692 82456692 G T LPHN2 Missense_Mutation p.A1359S 0.33 tolerated_low_confidence(1) benign(0.02) TCGA-IN-A6RI-01 20 10620077 10620077 T C JAG1 3'UTR 0.10 TCGA-IN-A6RI-01 20 11899126 11899126 C T BTBD3 Missense_Mutation p.P68L 0.06 deleterious_low_confidence(0) benign(0.002) TCGA-IN-A6RI-01 20 17950981 17950990 TGGGAGAAGA - MGME1 Frame_Shift_Del p.G161Afs*30 0.08 TCGA-IN-A6RI-01 20 30436651 30436651 C T FOXS1 5'Flank 0.23 TCGA-IN-A6RI-01 20 47679790 47679790 T C CSE1L Missense_Mutation p.L46P 0.45 deleterious(0) probably_damaging(0.997) TCGA-IN-A6RI-01 21 10906876 10906876 T C TPTE 3'UTR 0.12 TCGA-IN-A6RI-01 22 45244839 45244839 G A ARHGAP8 Missense_Mutation p.G381E 0.07 tolerated(0.34) benign(0.241) TCGA-IN-A6RI-01 2 1500494 1500494 T G TPO Silent p.T781T 0.32 TCGA-IN-A6RI-01 2 160604515 160604515 G A MARCH7 Silent p.T238T 0.56 TCGA-IN-A6RI-01 2 166166923 166166923 C T SCN2A Missense_Mutation p.A263V 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-IN-A6RI-01 2 179398543 179398543 T C TTN Missense_Mutation p.K34267E 0.30 TCGA-IN-A6RI-01 2 179650412 179650412 G A TTN Missense_Mutation p.R810C 0.55 TCGA-IN-A6RI-01 2 18112403 18112403 A G KCNS3 Missense_Mutation p.K43R 0.18 tolerated(1) benign(0.005) TCGA-IN-A6RI-01 2 232320138 232320138 C T NCL Missense_Mutation p.G677D 0.03 possibly_damaging(0.886) TCGA-IN-A6RI-01 2 80874873 80874873 A C CTNNA2 Missense_Mutation p.K865T 0.41 deleterious(0) probably_damaging(1) TCGA-IN-A6RI-01 2 95847590 95847590 C A ZNF2 Missense_Mutation p.D339E 0.43 tolerated(1) benign(0.001) TCGA-IN-A6RI-01 3 120360524 120360524 T C HGD Missense_Mutation p.N264S 0.37 deleterious(0) possibly_damaging(0.74) TCGA-IN-A6RI-01 3 124165627 124165627 A G KALRN Silent p.Q1147Q 0.35 TCGA-IN-A6RI-01 3 151082848 151082848 C A MED12L Missense_Mutation p.F978L 0.42 deleterious(0.03) possibly_damaging(0.615) TCGA-IN-A6RI-01 3 195938264 195938264 G A ZDHHC19 5'UTR 0.25 TCGA-IN-A6RI-01 3 196386901 196386901 C T NRROS Silent p.H129H 0.29 TCGA-IN-A6RI-01 3 32576070 32576070 C G DYNC1LI1 Missense_Mutation p.V301L 0.40 tolerated(0.11) benign(0.003) TCGA-IN-A6RI-01 3 62385183 62385183 G A CADPS Silent p.N1320N 0.31 TCGA-IN-A6RI-01 3 97868802 97868802 T C OR5H14 Silent p.D191D 0.29 TCGA-IN-A6RI-01 4 13338210 13338210 C G HSP90AB2P RNA 0.25 TCGA-IN-A6RI-01 4 146032188 146032188 G A ABCE1 Missense_Mutation p.A228T 0.35 deleterious(0.01) probably_damaging(0.99) TCGA-IN-A6RI-01 4 20487826 20487826 T C SLIT2 Silent p.T181T 0.38 TCGA-IN-A6RI-01 4 57182719 57182719 G A KIAA1211 Silent p.S1017S 0.39 TCGA-IN-A6RI-01 4 677412 677412 C T MFSD7 Missense_Mutation p.V327M 0.23 deleterious(0.04) benign(0.279) TCGA-IN-A6RI-01 4 79437046 79437046 C T FRAS1 Missense_Mutation p.P3423L 0.27 benign(0.002) TCGA-IN-A6RI-01 5 121787257 121787257 A G SNCAIP Silent p.G905G 0.22 TCGA-IN-A6RI-01 5 140811791 140811791 T C PCDHGA12 Missense_Mutation p.Y489H 0.06 deleterious_low_confidence(0) probably_damaging(1) TCGA-IN-A6RI-01 5 35771827 35771827 C G SPEF2 Silent p.P1306P 0.31 TCGA-IN-A6RI-01 5 35910552 35910552 T A CAPSL Missense_Mutation p.K77N 0.25 tolerated(0.37) benign(0.003) TCGA-IN-A6RI-01 5 60999793 60999793 T C C5orf64 Missense_Mutation p.M109T 0.41 deleterious_low_confidence(0) benign(0.402) TCGA-IN-A6RI-01 5 9054242 9054242 C A SEMA5A Silent p.G882G 0.40 TCGA-IN-A6RI-01 6 123318897 123318897 G A CLVS2 5'UTR 0.07 TCGA-IN-A6RI-01 6 146351321 146351321 A C GRM1 Missense_Mutation p.N223T 0.31 deleterious(0) probably_damaging(0.933) TCGA-IN-A6RI-01 6 161071376 161071376 G A LPA Missense_Mutation p.P68L 0.33 deleterious(0.02) probably_damaging(1) TCGA-IN-A6RI-01 6 161966461 161966461 T G PARK2 Intron 0.37 TCGA-IN-A6RI-01 6 28501818 28501818 T C GPX5 Silent p.R180R 0.37 TCGA-IN-A6RI-01 6 30633305 30633305 T C DHX16 Missense_Mutation p.K291R 0.12 tolerated(0.47) unknown(0) TCGA-IN-A6RI-01 6 70875860 70875860 G A COL19A1 Missense_Mutation p.G810R 0.36 deleterious(0) probably_damaging(1) TCGA-IN-A6RI-01 6 93979254 93979254 T G EPHA7 Missense_Mutation p.N525T 0.42 tolerated(0.63) benign(0.002) TCGA-IN-A6RI-01 7 150325453 150325453 G A GIMAP6 Missense_Mutation p.T78I 0.51 tolerated(0.19) possibly_damaging(0.776) TCGA-IN-A6RI-01 7 38574555 38574555 A T AMPH Nonsense_Mutation p.Y42* 0.35 TCGA-IN-A6RI-01 7 4308380 4308380 T C SDK1 3'UTR 0.27 TCGA-IN-A6RI-01 7 73630393 73630393 C T LAT2 Missense_Mutation p.R30C 0.35 deleterious(0) probably_damaging(1) TCGA-IN-A6RI-01 8 104898169 104898169 T G RIMS2 Missense_Mutation p.L448V 0.06 tolerated_low_confidence(0.12) benign(0.007) TCGA-IN-A6RI-01 8 105263950 105263950 C T RIMS2 Missense_Mutation p.P1318S 0.06 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-IN-A6RI-01 8 105503760 105503760 A C LRP12 Missense_Mutation p.V574G 0.49 deleterious(0) probably_damaging(0.94) TCGA-IN-A6RI-01 8 3267129 3267129 T C CSMD1 Splice_Site p.X521_splice 0.33 TCGA-IN-A6RI-01 8 75928831 75928831 A G CRISPLD1 Silent p.E253E 0.26 TCGA-IN-A6RI-01 8 90965675 90965675 T C NBN Missense_Mutation p.N548D 0.44 tolerated(0.1) benign(0.011) TCGA-IN-A6RI-01 9 116856200 116856200 G A KIF12 Missense_Mutation p.R318C 0.10 deleterious(0.03) possibly_damaging(0.677) TCGA-IN-A6RI-01 9 2086956 2086956 A G SMARCA2 Missense_Mutation p.Q885R 0.46 benign(0.036) TCGA-IN-A6RI-01 X 101912053 101912053 C T GPRASP1 Missense_Mutation p.P1071L 0.63 deleterious(0) possibly_damaging(0.83) TCGA-IN-A6RI-01 X 144337215 144337215 T G SPANXN1 Missense_Mutation p.L34V 0.07 tolerated(0.27) possibly_damaging(0.871) TCGA-IN-A6RJ-01 10 16563108 16563108 C T C1QL3 5'UTR 0.30 TCGA-IN-A6RJ-01 10 18242355 18242355 C G SLC39A12 Silent p.L50L 0.06 TCGA-IN-A6RJ-01 10 18250710 18250710 A C SLC39A12 Missense_Mutation p.E154D 0.20 deleterious(0.05) probably_damaging(0.999) TCGA-IN-A6RJ-01 10 46961867 46961867 G A SYT15 3'Flank 0.08 TCGA-IN-A6RJ-01 10 5496479 5496479 G T NET1 Missense_Mutation p.E340D 0.08 tolerated(0.11) benign(0.445) TCGA-IN-A6RJ-01 10 55566868 55566868 T G PCDH15 Missense_Mutation p.K1506T 0.17 tolerated_low_confidence(0.06) benign(0.079) TCGA-IN-A6RJ-01 10 55973754 55973754 A G PCDH15 Missense_Mutation p.L347P 0.11 deleterious(0) probably_damaging(0.984) TCGA-IN-A6RJ-01 10 60560796 60560796 T G BICC1 Missense_Mutation p.S669A 0.26 tolerated(0.06) benign(0.213) TCGA-IN-A6RJ-01 10 60566912 60566912 T A BICC1 Silent p.T790T 0.09 TCGA-IN-A6RJ-01 11 100179143 100179143 G C CNTN5 Missense_Mutation p.E891D 0.05 tolerated(0.13) probably_damaging(0.999) TCGA-IN-A6RJ-01 11 123811018 123811018 G T OR4D5 Missense_Mutation p.G232V 0.05 deleterious(0) possibly_damaging(0.475) TCGA-IN-A6RJ-01 11 22363082 22363082 A C SLC17A6 Missense_Mutation p.E32A 0.07 tolerated(0.05) benign(0.354) TCGA-IN-A6RJ-01 11 27679558 27679558 T C BDNF Missense_Mutation p.K267R 0.08 tolerated(0.55) probably_damaging(0.915) TCGA-IN-A6RJ-01 11 55890034 55890034 T C OR8H3 Silent p.F62F 0.18 TCGA-IN-A6RJ-01 11 62356651 62356651 T C TUT1 Missense_Mutation p.H80R 0.07 tolerated(0.99) benign(0.011) TCGA-IN-A6RJ-01 11 6291982 6291982 G A CCKBR Missense_Mutation p.D254N 0.23 tolerated(0.31) benign(0.017) TCGA-IN-A6RJ-01 11 63487821 63487821 C T RTN3 Missense_Mutation p.S616F 0.05 deleterious(0.01) possibly_damaging(0.847) TCGA-IN-A6RJ-01 11 67352180 67352180 C T GSTP1 Nonsense_Mutation p.Q57* 0.03 TCGA-IN-A6RJ-01 11 68675677 68675677 C T IGHMBP2 Silent p.T107T 0.26 TCGA-IN-A6RJ-01 11 71726700 71726700 G A NUMA1 Silent p.L617L 0.19 TCGA-IN-A6RJ-01 11 85375742 85375742 C T CREBZF Missense_Mutation p.E60K 0.12 tolerated_low_confidence(0.23) benign(0.007) TCGA-IN-A6RJ-01 12 100904824 100904824 G A NR1H4 Silent p.A126A 0.08 TCGA-IN-A6RJ-01 12 105568083 105568083 G A APPL2 3'UTR 0.07 TCGA-IN-A6RJ-01 12 109692128 109692128 G A ACACB Missense_Mutation p.R2052K 0.12 tolerated(0.53) benign(0.045) TCGA-IN-A6RJ-01 12 117962864 117962864 A T KSR2 Missense_Mutation p.L671H 0.11 deleterious(0.02) possibly_damaging(0.896) TCGA-IN-A6RJ-01 12 20801740 20801740 A T PDE3A Missense_Mutation p.K895M 0.10 deleterious(0) probably_damaging(0.999) TCGA-IN-A6RJ-01 12 42707529 42707529 G A ZCRB1 Missense_Mutation p.P162L 0.04 tolerated(0.06) benign(0.079) TCGA-IN-A6RJ-01 12 52282975 52282975 A G ANKRD33 Missense_Mutation p.Q174R 0.08 deleterious(0) probably_damaging(0.993) TCGA-IN-A6RJ-01 12 52840977 52840977 G A KRT6B Silent p.H564H 0.14 TCGA-IN-A6RJ-01 12 57864192 57864192 C T GLI1 Missense_Mutation p.R557C 0.14 deleterious(0) probably_damaging(0.998) TCGA-IN-A6RJ-01 13 102379052 102379052 A G FGF14 Silent p.L178L 0.29 TCGA-IN-A6RJ-01 13 25066627 25066627 G C PARP4 Missense_Mutation p.P329A 0.07 deleterious(0.01) probably_damaging(0.987) TCGA-IN-A6RJ-01 13 37016441 37016441 A G CCNA1 Missense_Mutation p.K449R 0.21 deleterious(0.04) probably_damaging(0.998) TCGA-IN-A6RJ-01 13 48919318 48919318 C G RB1 Silent p.L161L 0.14 TCGA-IN-A6RJ-01 13 97485087 97485087 T C HS6ST3 Missense_Mutation p.F351L 0.12 deleterious(0.02) possibly_damaging(0.703) TCGA-IN-A6RJ-01 14 106091358 106091358 G A IGHG4 Missense_Mutation p.T179M 0.16 deleterious(0) probably_damaging(0.992) TCGA-IN-A6RJ-01 14 20216395 20216395 A C OR4Q3 Missense_Mutation p.K270T 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-IN-A6RJ-01 14 20388990 20388990 T A OR4K5 Silent p.S75S 0.12 TCGA-IN-A6RJ-01 14 20612517 20612517 T G OR4N5 Missense_Mutation p.L208R 0.13 deleterious(0) probably_damaging(0.979) TCGA-IN-A6RJ-01 14 24885245 24885245 C T NYNRIN Silent p.T1430T 0.07 TCGA-IN-A6RJ-01 14 33291387 33291387 A C AKAP6 Missense_Mutation p.E1456D 0.18 tolerated_low_confidence(0.11) benign(0.024) TCGA-IN-A6RJ-01 14 50089217 50089220 CTAA - MGAT2 Frame_Shift_Del p.T412Sfs*8 0.15 TCGA-IN-A6RJ-01 14 73464684 73464684 C T ZFYVE1 Missense_Mutation p.D275N 0.17 deleterious(0) probably_damaging(0.997) TCGA-IN-A6RJ-01 14 86087886 86087886 A G FLRT2 Missense_Mutation p.S10G 0.24 tolerated(0.23) benign(0) TCGA-IN-A6RJ-01 14 86088396 86088396 G C FLRT2 Missense_Mutation p.V180L 0.19 tolerated(0.31) benign(0.001) TCGA-IN-A6RJ-01 14 93653145 93653145 A T TMEM251 3'UTR 0.26 TCGA-IN-A6RJ-01 15 25924926 25924926 A C ATP10A Silent p.S1354S 0.06 TCGA-IN-A6RJ-01 15 25963457 25963457 C T ATP10A Missense_Mutation p.G485S 0.12 tolerated(0.43) benign(0.019) TCGA-IN-A6RJ-01 15 48633776 48633776 A C DUT Missense_Mutation p.E232D 0.14 deleterious(0.01) benign(0.41) TCGA-IN-A6RJ-01 15 52901351 52901351 T G FAM214A Missense_Mutation p.Q587P 0.15 tolerated(0.28) benign(0.005) TCGA-IN-A6RJ-01 15 83935597 83935597 G A BNC1 Silent p.Y142Y 0.10 TCGA-IN-A6RJ-01 16 14968903 14968903 G A NOMO1 Missense_Mutation p.D689N 0.06 tolerated(0.13) benign(0.032) TCGA-IN-A6RJ-01 16 75204281 75204281 G A ZFP1 3'UTR 0.32 TCGA-IN-A6RJ-01 17 14248463 14248463 G A HS3ST3B1 Missense_Mutation p.V225M 0.34 deleterious(0.01) probably_damaging(0.995) TCGA-IN-A6RJ-01 17 39535241 39535241 G A KRT34 Missense_Mutation p.T397M 0.13 deleterious(0.01) probably_damaging(1) TCGA-IN-A6RJ-01 17 45368487 45368487 A C ITGB3 Intron 0.07 TCGA-IN-A6RJ-01 18 21474265 21474265 G A LAMA3 Missense_Mutation p.C1805Y 0.07 probably_damaging(0.954) TCGA-IN-A6RJ-01 18 29437875 29437875 T C TRAPPC8 Missense_Mutation p.N939S 0.19 deleterious(0) probably_damaging(0.999) TCGA-IN-A6RJ-01 18 5394764 5394764 T C EPB41L3 Missense_Mutation p.K1061R 0.14 deleterious(0.05) benign(0.364) TCGA-IN-A6RJ-01 18 5397201 5397201 C A EPB41L3 Missense_Mutation p.E899D 0.20 tolerated(0.19) benign(0.003) TCGA-IN-A6RJ-01 19 10088308 10088308 C T COL5A3 Missense_Mutation p.E1030K 0.10 benign(0.021) TCGA-IN-A6RJ-01 19 12781077 12781077 G A WDR83 Missense_Mutation p.R103H 0.13 deleterious(0) probably_damaging(0.966) TCGA-IN-A6RJ-01 19 12781078 12781078 C A WDR83 Silent p.R103R 0.12 TCGA-IN-A6RJ-01 19 17844187 17844187 G A MAP1S Missense_Mutation p.V992I 0.12 tolerated(0.75) benign(0.279) TCGA-IN-A6RJ-01 19 21926888 21926888 T A ZNF100 Missense_Mutation p.I85F 0.15 deleterious(0) benign(0.387) TCGA-IN-A6RJ-01 19 30934917 30934917 C T ZNF536 Missense_Mutation p.R150C 0.13 deleterious(0.02) probably_damaging(0.999) TCGA-IN-A6RJ-01 19 30935959 30935959 C T ZNF536 Missense_Mutation p.P497L 0.19 deleterious(0.03) probably_damaging(0.999) TCGA-IN-A6RJ-01 19 31767597 31767597 C A TSHZ3 Missense_Mutation p.E1034D 0.09 tolerated(0.21) possibly_damaging(0.48) TCGA-IN-A6RJ-01 19 36317473 36317473 G T NPHS1 Missense_Mutation p.D1223E 0.19 tolerated(0.42) benign(0.26) TCGA-IN-A6RJ-01 19 3977945 3977945 G A EEF2 Missense_Mutation p.R647C 0.17 deleterious(0) probably_damaging(0.991) TCGA-IN-A6RJ-01 19 43372099 43372099 T G PSG1 3'UTR 0.21 TCGA-IN-A6RJ-01 19 46347310 46347310 G T SYMPK Silent p.I275I 0.14 TCGA-IN-A6RJ-01 19 50397635 50397635 T A IL4I1 Nonsense_Mutation p.K175* 0.08 TCGA-IN-A6RJ-01 19 53645498 53645498 G T ZNF347 Missense_Mutation p.L196M 0.17 tolerated(0.08) possibly_damaging(0.816) TCGA-IN-A6RJ-01 19 56241343 56241343 G A NLRP9 Silent p.L616L 0.13 TCGA-IN-A6RJ-01 19 57286620 57286620 T G ZIM2 Missense_Mutation p.Q340H 0.14 tolerated(0.14) benign(0.01) TCGA-IN-A6RJ-01 19 9087889 9087889 G T MUC16 Missense_Mutation p.A1309D 0.05 unknown(0) TCGA-IN-A6RJ-01 1 13036458 13036458 G A PRAMEF22 Missense_Mutation p.R177K 0.20 tolerated(1) possibly_damaging(0.854) TCGA-IN-A6RJ-01 1 152186937 152186937 A G HRNR Missense_Mutation p.S2390P 0.15 unknown(0) TCGA-IN-A6RJ-01 1 152329419 152329419 A C FLG2 Silent p.G281G 0.16 TCGA-IN-A6RJ-01 1 160160587 160160587 C T CASQ1 Missense_Mutation p.R16W 0.07 tolerated(0.11) benign(0.282) TCGA-IN-A6RJ-01 1 175336377 175336377 G T TNR Missense_Mutation p.Q674K 0.11 tolerated(0.07) benign(0.018) TCGA-IN-A6RJ-01 1 185934993 185934993 G A HMCN1 Missense_Mutation p.V720I 0.11 benign(0.006) TCGA-IN-A6RJ-01 1 192150478 192150478 G T RGS18 Nonsense_Mutation p.E114* 0.10 TCGA-IN-A6RJ-01 1 197896833 197896833 G A LHX9 Missense_Mutation p.M282I 0.05 deleterious(0) possibly_damaging(0.745) TCGA-IN-A6RJ-01 1 202932830 202932830 G T CYB5R1 Silent p.I195I 0.17 TCGA-IN-A6RJ-01 1 22817021 22817021 C T ZBTB40 Nonsense_Mutation p.Q194* 0.09 TCGA-IN-A6RJ-01 1 231885787 231885787 A G DISC1 Silent p.Q411Q 0.11 TCGA-IN-A6RJ-01 1 248366676 248366676 T G OR2M3 Missense_Mutation p.F103V 0.16 tolerated(0.1) benign(0.128) TCGA-IN-A6RJ-01 1 51753878 51753878 G C TTC39A Missense_Mutation p.S566C 0.05 deleterious(0.01) unknown(0) TCGA-IN-A6RJ-01 1 65098384 65098384 C T CACHD1 Silent p.D198D 0.13 TCGA-IN-A6RJ-01 1 7151399 7151399 C T CAMTA1 Silent p.H90H 0.16 TCGA-IN-A6RJ-01 1 86900342 86900342 C T CLCA2 Missense_Mutation p.L296F 0.07 tolerated(0.31) benign(0.037) TCGA-IN-A6RJ-01 20 13740371 13740371 T G ESF1 Missense_Mutation p.N599T 0.24 tolerated(0.18) probably_damaging(0.989) TCGA-IN-A6RJ-01 20 23856831 23856831 T G CST5 Missense_Mutation p.K141N 0.36 tolerated(0.11) benign(0.002) TCGA-IN-A6RJ-01 20 29845528 29845528 T G DEFB115 Missense_Mutation p.V21G 0.11 tolerated(0.06) benign(0) TCGA-IN-A6RJ-01 20 44569764 44569764 G A PCIF1 Silent p.P197P 0.07 TCGA-IN-A6RJ-01 20 58348371 58348371 T A PHACTR3 Missense_Mutation p.S263R 0.09 tolerated(0.29) benign(0.101) TCGA-IN-A6RJ-01 20 61918947 61918947 G A ARFGAP1 Missense_Mutation p.G323S 0.08 tolerated(0.27) benign(0.013) TCGA-IN-A6RJ-01 20 62178476 62178476 G A SRMS Missense_Mutation p.T114M 0.06 tolerated(0.12) benign(0.035) TCGA-IN-A6RJ-01 22 37876306 37876306 C T MFNG Silent p.A112A 0.12 TCGA-IN-A6RJ-01 22 43570378 43570378 G A TTLL12 Silent p.L356L 0.14 TCGA-IN-A6RJ-01 2 141259339 141259339 T A LRP1B Nonsense_Mutation p.R2923* 0.15 TCGA-IN-A6RJ-01 2 15307290 15307290 T G NBAS Missense_Mutation p.H2333P 0.08 deleterious(0.02) benign(0.081) TCGA-IN-A6RJ-01 2 163123709 163123709 G A IFIH1 3'UTR 0.20 TCGA-IN-A6RJ-01 2 179416419 179416419 T C TTN Missense_Mutation p.N30403S 0.09 TCGA-IN-A6RJ-01 2 1812914 1812914 A C MYT1L Missense_Mutation p.S1034A 0.10 tolerated(0.73) benign(0.122) TCGA-IN-A6RJ-01 2 198351917 198351917 C G HSPD1 Silent p.V525V 0.14 TCGA-IN-A6RJ-01 2 21249694 21249694 T A APOB Missense_Mutation p.H737L 0.15 possibly_damaging(0.572) TCGA-IN-A6RJ-01 2 223559200 223559200 T C MOGAT1 Missense_Mutation p.F200L 0.15 tolerated(0.63) benign(0.16) TCGA-IN-A6RJ-01 2 229890341 229890341 A G PID1 3'UTR 0.06 TCGA-IN-A6RJ-01 2 33810020 33810020 A G FAM98A Silent p.G460G 0.07 TCGA-IN-A6RJ-01 2 51254923 51254923 G A NRXN1 Silent p.R163R 0.11 TCGA-IN-A6RJ-01 2 77746793 77746793 A C LRRTM4 Missense_Mutation p.L68V 0.13 deleterious(0) probably_damaging(0.999) TCGA-IN-A6RJ-01 2 80085262 80085262 C A CTNNA2 Missense_Mutation p.A141E 0.20 deleterious(0) probably_damaging(1) TCGA-IN-A6RJ-01 2 80646693 80646693 A G CTNNA2 Silent p.Q419Q 0.08 TCGA-IN-A6RJ-01 2 88890104 88890104 G C EIF2AK3 Missense_Mutation p.S341C 0.09 deleterious(0) probably_damaging(0.976) TCGA-IN-A6RJ-01 2 88890409 88890409 A C EIF2AK3 Missense_Mutation p.I310R 0.05 deleterious(0) probably_damaging(0.982) TCGA-IN-A6RJ-01 3 150883667 150883667 A C MED12L Missense_Mutation p.E464D 0.06 tolerated(0.71) benign(0.093) TCGA-IN-A6RJ-01 3 156983365 156983365 G A VEPH1 Missense_Mutation p.R739C 0.10 deleterious(0) probably_damaging(0.996) TCGA-IN-A6RJ-01 3 164709237 164709237 A C SI Missense_Mutation p.F1671C 0.07 tolerated(0.05) possibly_damaging(0.762) TCGA-IN-A6RJ-01 3 164735779 164735779 A G SI Silent p.L1167L 0.09 TCGA-IN-A6RJ-01 3 167508347 167508347 C G SERPINI1 Silent p.A146A 0.15 TCGA-IN-A6RJ-01 3 192517008 192517008 T C MB21D2 Missense_Mutation p.K215E 0.07 tolerated(0.23) benign(0.021) TCGA-IN-A6RJ-01 3 27472839 27472839 G A SLC4A7 Missense_Mutation p.A358V 0.10 tolerated(0.3) benign(0.002) TCGA-IN-A6RJ-01 3 97356863 97356863 A C EPHA6 Missense_Mutation p.K907N 0.09 deleterious(0.03) probably_damaging(0.999) TCGA-IN-A6RJ-01 4 123130419 123130419 A C KIAA1109 Missense_Mutation p.T620P 0.14 benign(0) TCGA-IN-A6RJ-01 4 126372685 126372685 A T FAT4 Missense_Mutation p.D3505V 0.17 probably_damaging(0.999) TCGA-IN-A6RJ-01 4 68928905 68928905 A C TMPRSS11F Intron 0.16 TCGA-IN-A6RJ-01 4 87769921 87769921 G A SLC10A6 Silent p.T116T 0.15 TCGA-IN-A6RJ-01 5 110679802 110679802 T G CAMK4 Splice_Site p.X80_splice 0.07 TCGA-IN-A6RJ-01 5 115815859 115815859 G A SEMA6A Silent p.P403P 0.13 TCGA-IN-A6RJ-01 5 140573897 140573897 C T PCDHB10 Missense_Mutation p.A591V 0.11 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-IN-A6RJ-01 5 156592996 156592996 C A FAM71B Missense_Mutation p.D62Y 0.15 deleterious(0) probably_damaging(0.999) TCGA-IN-A6RJ-01 5 157065338 157065338 G C SOX30 Missense_Mutation p.P594A 0.07 tolerated(0.06) benign(0.017) TCGA-IN-A6RJ-01 6 100911257 100911257 G C SIM1 Missense_Mutation p.P30A 0.05 deleterious(0.03) probably_damaging(0.999) TCGA-IN-A6RJ-01 6 137525557 137525557 T C IFNGR1 Missense_Mutation p.N153S 0.18 tolerated(0.22) benign(0.012) TCGA-IN-A6RJ-01 6 152419948 152419948 C T ESR1 Silent p.D545D 0.15 TCGA-IN-A6RJ-01 6 162683735 162683735 T C PARK2 Silent p.Q78Q 0.05 TCGA-IN-A6RJ-01 6 16326661 16326661 G A ATXN1 Silent p.A627A 0.15 TCGA-IN-A6RJ-01 6 29231769 29231769 A C XXbac-BPG308J9.3 RNA 0.10 TCGA-IN-A6RJ-01 6 29627404 29627404 T A MOG Missense_Mutation p.S133T 0.07 tolerated(0.54) benign(0.31) TCGA-IN-A6RJ-01 6 30114834 30114834 G A TRIM40 Intron 0.15 TCGA-IN-A6RJ-01 6 33423797 33423797 A G ZBTB9 Missense_Mutation p.K307R 0.07 tolerated(0.26) benign(0.054) TCGA-IN-A6RJ-01 6 39563965 39563965 T C KIF6 Silent p.G237G 0.12 TCGA-IN-A6RJ-01 6 46656493 46656498 GAGCGC - TDRD6 In_Frame_Del p.E210_R211del 0.08 TCGA-IN-A6RJ-01 6 52761671 52761671 C T GSTA3 Missense_Mutation p.G201D 0.15 deleterious(0.01) possibly_damaging(0.891) TCGA-IN-A6RJ-01 7 142567599 142567599 C T EPHB6 Silent p.A829A 0.19 TCGA-IN-A6RJ-01 7 2054206 2054206 C A MAD1L1 Missense_Mutation p.Q430H 0.09 deleterious(0) probably_damaging(0.999) TCGA-IN-A6RJ-01 7 21599226 21599226 C T DNAH11 Missense_Mutation p.P233L 0.12 benign(0.001) TCGA-IN-A6RJ-01 7 21784185 21784185 A C DNAH11 Silent p.R2769R 0.16 TCGA-IN-A6RJ-01 7 36958970 36958970 C T ELMO1 Intron 0.20 TCGA-IN-A6RJ-01 7 5568045 5568045 G A ACTB Silent p.F223F 0.11 TCGA-IN-A6RJ-01 8 10466100 10466100 C T RP1L1 Silent p.E1836E 0.10 TCGA-IN-A6RJ-01 8 105502952 105502952 T C LRP12 Silent p.E843E 0.09 TCGA-IN-A6RJ-01 8 113871376 113871376 T A CSMD3 Nonsense_Mutation p.K585* 0.06 TCGA-IN-A6RJ-01 8 12042867 12042867 G T FAM86B1 Intron 0.05 TCGA-IN-A6RJ-01 8 139601449 139601449 T G COL22A1 3'UTR 0.32 TCGA-IN-A6RJ-01 8 35583918 35583918 T A UNC5D Missense_Mutation p.F518I 0.20 tolerated(0.2) benign(0.007) TCGA-IN-A6RJ-01 8 41526051 41526051 C T ANK1 Missense_Mutation p.V1751I 0.30 tolerated_low_confidence(0.53) benign(0.005) TCGA-IN-A6RJ-01 8 51415430 51415430 A C SNTG1 Missense_Mutation p.E152D 0.08 tolerated(0.23) benign(0.005) TCGA-IN-A6RJ-01 9 23762204 23762204 G A ELAVL2 Missense_Mutation p.T10I 0.20 tolerated_low_confidence(0.06) benign(0.042) TCGA-IN-A6RJ-01 X 107977167 107977167 T C IRS4 Missense_Mutation p.K803R 0.31 tolerated(0.08) unknown(0) TCGA-IN-A6RJ-01 X 140969448 140969448 A G MAGEC3 Missense_Mutation p.T259A 0.31 deleterious(0.03) possibly_damaging(0.523) TCGA-IN-A6RJ-01 X 140993285 140993285 A G MAGEC1 Missense_Mutation p.Q32R 0.43 deleterious_low_confidence(0) benign(0.069) TCGA-IN-A6RJ-01 X 29417401 29417401 A C IL1RAPL1 Silent p.R227R 0.35 TCGA-IN-A6RJ-01 X 32472905 32472905 A G DMD Silent p.T1159T 0.11 TCGA-IN-A6RJ-01 X 48053653 48053653 C G SSX5 Missense_Mutation p.K105N 0.22 tolerated(0.28) benign(0.082) TCGA-IN-A6RJ-01 X 62944558 62944558 C T ARHGEF9 Missense_Mutation p.A15T 0.22 deleterious(0) probably_damaging(0.998) TCGA-IN-A6RL-01 10 100249941 100249941 A G HPSE2 Missense_Mutation p.S445P 0.40 deleterious(0) probably_damaging(0.939) TCGA-IN-A6RL-01 10 102684321 102684321 C T FAM178A Silent p.H521H 0.07 TCGA-IN-A6RL-01 10 103369232 103369232 G A DPCD 3'UTR 0.18 TCGA-IN-A6RL-01 10 112338459 112338459 G A SMC3 Missense_Mutation p.G142R 0.29 deleterious(0) probably_damaging(1) TCGA-IN-A6RL-01 10 114061882 114061882 A C TECTB Missense_Mutation p.S311R 0.12 tolerated_low_confidence(0.69) benign(0.011) TCGA-IN-A6RL-01 10 114903766 114903766 T G TCF7L2 Missense_Mutation p.L257R 0.25 deleterious(0) probably_damaging(0.999) TCGA-IN-A6RL-01 10 123843336 123843336 T A TACC2 Missense_Mutation p.S441T 0.05 benign(0.012) TCGA-IN-A6RL-01 10 23248490 23248490 A T ARMC3 Missense_Mutation p.Y175F 0.16 tolerated(0.27) possibly_damaging(0.791) TCGA-IN-A6RL-01 10 26463103 26463103 G T MYO3A Nonsense_Mutation p.E1304* 0.05 TCGA-IN-A6RL-01 10 27475543 27475543 G T MASTL 3'UTR 0.29 TCGA-IN-A6RL-01 10 30915759 30915759 T G LYZL2 Missense_Mutation p.K75T 0.32 deleterious(0.02) possibly_damaging(0.9) TCGA-IN-A6RL-01 10 64575886 64575886 C G EGR2 5'UTR 0.15 TCGA-IN-A6RL-01 10 88683195 88683195 G C BMPR1A Missense_Mutation p.D469H 0.10 deleterious(0) probably_damaging(0.999) TCGA-IN-A6RL-01 10 99350029 99350029 C T C10orf62 Silent p.A125A 0.39 TCGA-IN-A6RL-01 11 100863338 100863338 C G TMEM133 Missense_Mutation p.T100S 0.32 tolerated_low_confidence(0.17) possibly_damaging(0.486) TCGA-IN-A6RL-01 11 1010989 1010989 G A AP2A2 3'UTR 0.43 TCGA-IN-A6RL-01 11 101323671 101323671 A G TRPC6 3'UTR 0.06 TCGA-IN-A6RL-01 11 102712895 102712895 C A MMP3 Missense_Mutation p.K205N 0.06 tolerated(0.25) benign(0.093) TCGA-IN-A6RL-01 11 111365986 111365987 - T BTG4 Frame_Shift_Ins p.N189Efs*22 0.23 TCGA-IN-A6RL-01 11 117332239 117332239 C A DSCAML1 Missense_Mutation p.E1173D 0.12 tolerated(0.27) benign(0.011) TCGA-IN-A6RL-01 11 118925979 118925979 C T HYOU1 Missense_Mutation p.V113I 0.04 deleterious(0) probably_damaging(0.971) TCGA-IN-A6RL-01 11 120201046 120201046 C G TMEM136 Missense_Mutation p.P209R 0.19 deleterious(0.03) possibly_damaging(0.709) TCGA-IN-A6RL-01 11 121008198 121008198 A T TECTA Missense_Mutation p.T1004S 0.28 tolerated(0.37) benign(0.006) TCGA-IN-A6RL-01 11 121008393 121008393 A G TECTA Missense_Mutation p.R1069G 0.25 tolerated(0.14) benign(0.001) TCGA-IN-A6RL-01 11 121023711 121023711 C T TECTA Silent p.D1409D 0.26 TCGA-IN-A6RL-01 11 122709288 122709288 T A CRTAM Missense_Mutation p.F12I 0.16 deleterious(0.04) benign(0.105) TCGA-IN-A6RL-01 11 122805641 122805641 G T C11orf63 Nonsense_Mutation p.E498* 0.05 TCGA-IN-A6RL-01 11 124180354 124180354 G T OR8D1 Missense_Mutation p.F103L 0.33 deleterious(0.05) probably_damaging(0.993) TCGA-IN-A6RL-01 11 124626486 124626486 T C ESAM Silent p.Q134Q 0.08 TCGA-IN-A6RL-01 11 18159630 18159630 C A MRGPRX3 Missense_Mutation p.A294D 0.06 deleterious(0) probably_damaging(0.996) TCGA-IN-A6RL-01 11 32460689 32460689 G A WT1 5'Flank 0.55 TCGA-IN-A6RL-01 11 4842733 4842733 T A OR51F2 Missense_Mutation p.W40R 0.26 deleterious(0) probably_damaging(0.998) TCGA-IN-A6RL-01 11 4928716 4928716 C A OR51A7 Silent p.I39I 0.52 TCGA-IN-A6RL-01 11 4929092 4929092 A G OR51A7 Missense_Mutation p.R165G 0.10 deleterious(0.02) benign(0.049) TCGA-IN-A6RL-01 11 57003369 57003369 G T APLNR Silent p.I370I 0.41 TCGA-IN-A6RL-01 11 60296890 60296890 T G MS4A13 Missense_Mutation p.F120C 0.17 deleterious(0) probably_damaging(0.956) TCGA-IN-A6RL-01 11 62286317 62286317 G A AHNAK Missense_Mutation p.A5191V 0.15 possibly_damaging(0.64) TCGA-IN-A6RL-01 11 62677843 62677843 A T CHRM1 Missense_Mutation p.S244T 0.11 tolerated(0.61) benign(0) TCGA-IN-A6RL-01 11 62760955 62760955 G T SLC22A8 Silent p.L490L 0.06 TCGA-IN-A6RL-01 11 64024145 64024159 CCTGCCCCTGGAAGC - PLCB3 In_Frame_Del p.P309_L313del 0.34 TCGA-IN-A6RL-01 11 65266460 65266460 T C MALAT1 RNA 0.08 TCGA-IN-A6RL-01 11 65487901 65487901 G A RNASEH2C Intron 0.34 TCGA-IN-A6RL-01 11 68181312 68181312 G A LRP5 Missense_Mutation p.D887N 0.35 deleterious(0.01) probably_damaging(0.912) TCGA-IN-A6RL-01 11 71153310 71153310 T A DHCR7 Silent p.A137A 0.34 TCGA-IN-A6RL-01 11 73745530 73745530 T G C2CD3 3'UTR 0.31 TCGA-IN-A6RL-01 11 76248904 76248909 ATTCAG - C11orf30 In_Frame_Del p.I809_Q810del 0.14 TCGA-IN-A6RL-01 11 85347147 85347147 T G TMEM126B Silent p.L189L 0.07 TCGA-IN-A6RL-01 11 95712011 95712011 C A MAML2 3'UTR 0.27 TCGA-IN-A6RL-01 12 104083643 104083643 C A STAB2 Missense_Mutation p.T1022K 0.15 tolerated(0.62) benign(0.079) TCGA-IN-A6RL-01 12 110466443 110466443 C T ANKRD13A Nonsense_Mutation p.Q358* 0.44 TCGA-IN-A6RL-01 12 111760282 111760282 A G CUX2 Missense_Mutation p.S942G 0.19 deleterious(0.03) probably_damaging(0.994) TCGA-IN-A6RL-01 12 123489894 123489894 C A PITPNM2 Missense_Mutation p.G282V 0.50 tolerated(0.15) benign(0.001) TCGA-IN-A6RL-01 12 124408960 124408960 A G DNAH10 Missense_Mutation p.N3798S 0.16 benign(0.091) TCGA-IN-A6RL-01 12 13229046 13229046 C A KIAA1467 Silent p.A537A 0.12 TCGA-IN-A6RL-01 12 132681697 132681697 C T GALNT9 Silent p.G223G 0.65 TCGA-IN-A6RL-01 12 133202885 133202885 T C POLE Missense_Mutation p.N2117D 0.21 tolerated(0.43) benign(0.008) TCGA-IN-A6RL-01 12 14927543 14927543 G A H2AFJ Missense_Mutation p.G47R 0.12 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-IN-A6RL-01 12 18847941 18847941 G A PLCZ1 Missense_Mutation p.S455F 0.09 deleterious(0) probably_damaging(0.936) TCGA-IN-A6RL-01 12 2706652 2706652 T G CACNA1C Missense_Mutation p.I968S 0.26 deleterious(0) probably_damaging(0.994) TCGA-IN-A6RL-01 12 274675 274675 C G IQSEC3 Missense_Mutation p.Q929E 0.11 deleterious(0.02) benign(0.005) TCGA-IN-A6RL-01 12 27950716 27950716 G A KLHL42 Missense_Mutation p.V379I 0.13 tolerated(0.37) benign(0.025) TCGA-IN-A6RL-01 12 2933284 2933284 C T ITFG2 Silent p.A423A 0.07 TCGA-IN-A6RL-01 12 40757308 40757308 A G LRRK2 Missense_Mutation p.K2378R 0.12 deleterious(0.04) benign(0.102) TCGA-IN-A6RL-01 12 41967584 41967584 G T PDZRN4 Missense_Mutation p.K1001N 0.14 deleterious(0) possibly_damaging(0.776) TCGA-IN-A6RL-01 12 46211647 46211647 G A ARID2 Missense_Mutation p.A205T 0.38 deleterious(0) possibly_damaging(0.798) TCGA-IN-A6RL-01 12 4627995 4627995 A C C12orf4 Missense_Mutation p.I260M 0.11 tolerated(0.13) benign(0.131) TCGA-IN-A6RL-01 12 47628868 47628868 G A PCED1B Missense_Mutation p.E8K 0.48 deleterious(0) probably_damaging(0.941) TCGA-IN-A6RL-01 12 48370676 48370676 T C COL2A1 Silent p.K1118K 0.24 TCGA-IN-A6RL-01 12 52981501 52981501 A G KRT72 Silent p.R408R 0.05 TCGA-IN-A6RL-01 12 56364989 56364989 A C CDK2 Missense_Mutation p.K250N 0.43 tolerated(0.43) benign(0.007) TCGA-IN-A6RL-01 12 70091512 70091512 T C BEST3 Missense_Mutation p.K23E 0.10 tolerated(0.09) possibly_damaging(0.716) TCGA-IN-A6RL-01 12 72068117 72068117 G A THAP2 Missense_Mutation p.R69Q 0.52 tolerated(0.18) probably_damaging(0.992) TCGA-IN-A6RL-01 12 91347975 91347975 C G CCER1 Missense_Mutation p.G182A 0.08 deleterious(0) probably_damaging(0.959) TCGA-IN-A6RL-01 12 94975461 94975461 A C TMCC3 Missense_Mutation p.L311R 0.44 deleterious(0) probably_damaging(0.999) TCGA-IN-A6RL-01 12 97045487 97045487 C A C12orf55 Missense_Mutation p.P1665H 0.08 deleterious(0) probably_damaging(0.975) TCGA-IN-A6RL-01 13 101797234 101797234 T C NALCN Missense_Mutation p.E618G 0.59 deleterious(0) probably_damaging(0.986) TCGA-IN-A6RL-01 13 108861688 108861688 G A LIG4 Silent p.H643H 0.62 TCGA-IN-A6RL-01 13 109318489 109318489 A G MYO16 Missense_Mutation p.D73G 0.37 deleterious(0) probably_damaging(0.942) TCGA-IN-A6RL-01 13 23910252 23910252 A C SACS Missense_Mutation p.L2588R 0.08 probably_damaging(0.998) TCGA-IN-A6RL-01 13 32937423 32937423 C A BRCA2 Nonsense_Mutation p.S2695* 0.50 TCGA-IN-A6RL-01 13 36700142 36700142 G A DCLK1 Missense_Mutation p.R45C 0.26 deleterious(0) unknown(0) TCGA-IN-A6RL-01 13 52535989 52535989 T C ATP7B Missense_Mutation p.K644E 0.17 deleterious(0.01) benign(0.284) TCGA-IN-A6RL-01 13 67802315 67802316 - A PCDH9 Frame_Shift_Ins p.T87Hfs*19 0.37 TCGA-IN-A6RL-01 13 73284343 73284345 AGT - MZT1 3'UTR 0.77 TCGA-IN-A6RL-01 13 86370594 86370594 G T SLITRK6 Missense_Mutation p.S17Y 0.66 tolerated(0.98) benign(0.309) TCGA-IN-A6RL-01 13 99376174 99376174 A G SLC15A1 Silent p.P119P 0.10 TCGA-IN-A6RL-01 14 105695217 105695217 C T BRF1 Missense_Mutation p.R243K 0.08 deleterious(0.03) benign(0.324) TCGA-IN-A6RL-01 14 106067959 106067959 G A IGHE Missense_Mutation p.P36L 0.60 deleterious(0) probably_damaging(1) TCGA-IN-A6RL-01 14 20295809 20295809 T G OR4N2 Missense_Mutation p.F68V 0.10 tolerated(0.19) possibly_damaging(0.611) TCGA-IN-A6RL-01 14 21992025 21992025 C A SALL2 Nonsense_Mutation p.G613* 0.10 TCGA-IN-A6RL-01 14 22564744 22564744 G T TRDV1 Missense_Mutation p.M65I 0.27 tolerated(0.09) possibly_damaging(0.527) TCGA-IN-A6RL-01 14 22783196 22783206 GGAATACCCCA - TRAV40 Frame_Shift_Del p.E55Qfs*23 0.07 TCGA-IN-A6RL-01 14 23566984 23566984 G T C14orf119 Missense_Mutation p.M39I 0.10 tolerated(0.26) benign(0.046) TCGA-IN-A6RL-01 14 33293355 33293355 C T AKAP6 Silent p.Y2112Y 0.10 TCGA-IN-A6RL-01 14 38678730 38678730 T C SSTR1 Missense_Mutation p.S46P 0.50 tolerated(0.11) benign(0.047) TCGA-IN-A6RL-01 14 50088691 50088691 G A MGAT2 Nonsense_Mutation p.W235* 0.04 TCGA-IN-A6RL-01 14 53251341 53251341 C G GNPNAT1 Missense_Mutation p.D10H 0.21 deleterious(0.01) possibly_damaging(0.887) TCGA-IN-A6RL-01 14 57858356 57858356 C A NAA30 Silent p.I227I 0.08 TCGA-IN-A6RL-01 14 63447896 63447896 A G KCNH5 Silent p.A212A 0.27 TCGA-IN-A6RL-01 14 72138037 72138037 G T SIPA1L1 Missense_Mutation p.K819N 0.07 tolerated(1) probably_damaging(0.977) TCGA-IN-A6RL-01 14 95905454 95905454 C T SYNE3 Silent p.G764G 0.26 TCGA-IN-A6RL-01 14 96998949 96998949 A T PAPOLA Missense_Mutation p.T267S 0.08 deleterious(0) probably_damaging(0.972) TCGA-IN-A6RL-01 15 25444423 25444423 G T SNORD115-14 3'Flank 0.30 TCGA-IN-A6RL-01 15 28510800 28510800 T G HERC2 Missense_Mutation p.S612R 0.07 probably_damaging(0.987) TCGA-IN-A6RL-01 15 33855184 33855184 T C RYR3 Silent p.T373T 0.32 TCGA-IN-A6RL-01 15 34354869 34354869 G T CHRM5 5'UTR 0.17 TCGA-IN-A6RL-01 15 41822171 41822171 G T RPAP1 Missense_Mutation p.A317E 0.16 tolerated(1) benign(0.003) TCGA-IN-A6RL-01 15 41961189 41961189 A T MGA Missense_Mutation p.N33Y 0.06 deleterious(0) possibly_damaging(0.781) TCGA-IN-A6RL-01 15 42476814 42476814 C A VPS39 Missense_Mutation p.V207L 0.06 tolerated(1) benign(0.003) TCGA-IN-A6RL-01 15 43927987 43927988 CT G CATSPER2 Frame_Shift_Del p.E353Afs*31 0.13 TCGA-IN-A6RL-01 15 45562474 45562474 A G SLC28A2 Missense_Mutation p.T550A 0.12 tolerated(0.09) possibly_damaging(0.669) TCGA-IN-A6RL-01 15 48434314 48434314 A G SLC24A5 Silent p.A423A 0.09 TCGA-IN-A6RL-01 15 52702548 52702548 T A MYO5A Missense_Mutation p.K246N 0.11 deleterious(0) possibly_damaging(0.697) TCGA-IN-A6RL-01 15 57730861 57730861 G A CGNL1 Missense_Mutation p.V222M 0.14 tolerated(0.06) possibly_damaging(0.528) TCGA-IN-A6RL-01 15 59146716 59146716 A G FAM63B Silent p.G591G 0.08 TCGA-IN-A6RL-01 15 72502067 72502067 C T PKM Missense_Mutation p.G171D 0.17 tolerated(0.06) benign(0.2) TCGA-IN-A6RL-01 15 72858942 72858942 G A ARIH1 Missense_Mutation p.C317Y 0.09 deleterious(0) probably_damaging(0.967) TCGA-IN-A6RL-01 15 74467458 74467458 C T ISLR Missense_Mutation p.R87C 0.17 tolerated(0.18) probably_damaging(0.98) TCGA-IN-A6RL-01 15 76430143 76430143 T C C15orf27 Missense_Mutation p.F45S 0.17 deleterious_low_confidence(0) possibly_damaging(0.456) TCGA-IN-A6RL-01 15 78346473 78346473 C A TBC1D2B Missense_Mutation p.W139C 0.12 deleterious(0.04) probably_damaging(0.999) TCGA-IN-A6RL-01 15 90611248 90611248 G A ZNF710 Silent p.K293K 0.23 TCGA-IN-A6RL-01 15 90623031 90623031 G A ZNF710 Missense_Mutation p.M655I 0.11 tolerated_low_confidence(0.12) benign(0.029) TCGA-IN-A6RL-01 15 92706132 92706132 A G SLCO3A1 Missense_Mutation p.K634E 0.12 deleterious(0) probably_damaging(0.996) TCGA-IN-A6RL-01 15 99670191 99670191 G T SYNM Missense_Mutation p.L541F 0.22 deleterious(0.01) probably_damaging(0.995) TCGA-IN-A6RL-01 16 1143788 1143788 A G C1QTNF8 Missense_Mutation p.C158R 0.13 deleterious(0.05) benign(0.053) TCGA-IN-A6RL-01 16 14704658 14704658 A T PARN Missense_Mutation p.Y133N 0.06 deleterious(0) probably_damaging(1) TCGA-IN-A6RL-01 16 21245137 21245137 C A ANKS4B Missense_Mutation p.L27I 0.05 tolerated(0.09) benign(0.125) TCGA-IN-A6RL-01 16 23224207 23224207 G A SCNN1G Missense_Mutation p.V475I 0.09 deleterious(0.03) benign(0.021) TCGA-IN-A6RL-01 16 24579119 24579119 G T RBBP6 Missense_Mutation p.K653N 0.26 deleterious_low_confidence(0) possibly_damaging(0.838) TCGA-IN-A6RL-01 16 24816407 24816407 C G TNRC6A Missense_Mutation p.Q1353E 0.06 tolerated(0.08) benign(0.345) TCGA-IN-A6RL-01 16 24881234 24881234 T C SLC5A11 Silent p.L74L 0.29 TCGA-IN-A6RL-01 16 31151686 31151686 G A PRSS36 Missense_Mutation p.L740F 0.09 deleterious(0.05) benign(0.284) TCGA-IN-A6RL-01 16 3487103 3487103 A G ZNF597 Missense_Mutation p.L199P 0.48 deleterious(0) probably_damaging(1) TCGA-IN-A6RL-01 16 46998672 46998672 T G DNAJA2 Missense_Mutation p.K209Q 0.05 deleterious(0) probably_damaging(0.92) TCGA-IN-A6RL-01 16 47345175 47345175 A G ITFG1 Missense_Mutation p.V349A 0.40 tolerated(1) benign(0) TCGA-IN-A6RL-01 16 50830501 50830501 T G CYLD 3'UTR 0.28 TCGA-IN-A6RL-01 16 55559524 55559524 T C LPCAT2 Silent p.P92P 0.15 TCGA-IN-A6RL-01 16 57394360 57394360 G A CCL22 Missense_Mutation p.A29T 0.31 tolerated(0.17) benign(0.395) TCGA-IN-A6RL-01 16 58150024 58150024 T G C16orf80 Missense_Mutation p.K66T 0.08 tolerated(0.2) benign(0.012) TCGA-IN-A6RL-01 16 58589379 58589379 G A CNOT1 Silent p.N889N 0.15 TCGA-IN-A6RL-01 16 67859699 67859699 T C TSNAXIP1 Missense_Mutation p.F261S 0.06 deleterious(0) probably_damaging(0.964) TCGA-IN-A6RL-01 16 68729158 68729158 T G CDH3 Missense_Mutation p.F668C 0.16 deleterious(0.02) benign(0.001) TCGA-IN-A6RL-01 16 75513136 75513136 G T CHST6 Silent p.I197I 0.07 TCGA-IN-A6RL-01 16 81094820 81094820 C T C16orf46 Silent p.P378P 0.23 TCGA-IN-A6RL-01 16 81965124 81965124 C A PLCG2 Missense_Mutation p.N868K 0.19 tolerated(0.08) benign(0.223) TCGA-IN-A6RL-01 17 10428248 10428248 G T MYH2 Silent p.I1599I 0.08 TCGA-IN-A6RL-01 17 14683190 14683190 T C AC005863.1 RNA 0.50 TCGA-IN-A6RL-01 17 16701685 16701685 C A CCDC144A 3'UTR 0.05 TCGA-IN-A6RL-01 17 27284559 27284559 T G SEZ6 Splice_Site p.X768_splice 0.48 TCGA-IN-A6RL-01 17 31324506 31324506 G A SPACA3 Missense_Mutation p.M182I 0.10 deleterious(0.01) possibly_damaging(0.722) TCGA-IN-A6RL-01 17 34072287 34072287 G T GAS2L2 Silent p.P743P 0.06 TCGA-IN-A6RL-01 17 39887967 39887967 G A HAP1 Missense_Mutation p.H309Y 0.21 deleterious(0.01) benign(0.291) TCGA-IN-A6RL-01 17 42390557 42390557 A C RUNDC3A Missense_Mutation p.K103N 0.09 tolerated(0.1) probably_damaging(0.995) TCGA-IN-A6RL-01 17 45913056 45913056 A G LRRC46 Silent p.Q99Q 0.08 TCGA-IN-A6RL-01 17 5073849 5073849 G T USP6 Missense_Mutation p.R1198L 0.45 tolerated_low_confidence(0.24) possibly_damaging(0.46) TCGA-IN-A6RL-01 17 56051991 56051991 A T VEZF1 Missense_Mutation p.V470D 0.11 deleterious_low_confidence(0) probably_damaging(0.937) TCGA-IN-A6RL-01 17 58529358 58529358 G T APPBP2 Missense_Mutation p.L463I 0.33 deleterious(0.01) probably_damaging(0.994) TCGA-IN-A6RL-01 17 60484454 60484454 G T EFCAB3 Missense_Mutation p.D302Y 0.05 deleterious(0) probably_damaging(0.998) TCGA-IN-A6RL-01 17 61996169 61996169 G A GH1 5'UTR 0.06 TCGA-IN-A6RL-01 17 62290742 62290742 T C TEX2 Missense_Mutation p.K279R 0.06 tolerated(0.08) probably_damaging(0.986) TCGA-IN-A6RL-01 17 6554924 6554924 A C MED31 5'UTR 0.25 TCGA-IN-A6RL-01 17 6673993 6673993 A C XAF1 Missense_Mutation p.K180T 0.09 tolerated(0.18) benign(0.149) TCGA-IN-A6RL-01 17 6733513 6733513 C A TEKT1 Missense_Mutation p.K61N 0.49 deleterious(0.03) possibly_damaging(0.905) TCGA-IN-A6RL-01 17 71394234 71394234 C A SDK2 Missense_Mutation p.M1098I 0.29 tolerated(0.32) benign(0.006) TCGA-IN-A6RL-01 17 73726350 73726350 C G ITGB4 Missense_Mutation p.T256S 0.31 tolerated(0.09) possibly_damaging(0.648) TCGA-IN-A6RL-01 17 74289746 74289746 T C QRICH2 Silent p.R188R 0.10 TCGA-IN-A6RL-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.60 tolerated(0.13) possibly_damaging(0.631) TCGA-IN-A6RL-01 17 76079238 76079238 G T TNRC6C Missense_Mutation p.Q1153H 0.36 deleterious(0) probably_damaging(0.999) TCGA-IN-A6RL-01 17 76446423 76446423 G T DNAH17 Nonsense_Mutation p.Y3637* 0.16 TCGA-IN-A6RL-01 17 76521202 76521202 C T DNAH17 Silent p.A1247A 0.39 TCGA-IN-A6RL-01 17 80047252 80047252 C A FASN Silent p.V658V 0.07 TCGA-IN-A6RL-01 18 109192 109192 T C ROCK1P1 RNA 0.18 TCGA-IN-A6RL-01 18 13825877 13825877 T C MC5R Missense_Mutation p.I38T 0.09 deleterious(0) benign(0.084) TCGA-IN-A6RL-01 18 14852079 14852079 T G ANKRD30B Missense_Mutation p.V1260G 0.15 deleterious(0.03) probably_damaging(0.967) TCGA-IN-A6RL-01 18 44580769 44580770 - A KATNAL2 Frame_Shift_Ins p.N27Kfs*2 0.36 TCGA-IN-A6RL-01 18 47317959 47317959 T C ACAA2 Missense_Mutation p.D255G 0.09 deleterious(0) probably_damaging(1) TCGA-IN-A6RL-01 19 11917522 11917522 T C ZNF491 Silent p.L252L 0.06 TCGA-IN-A6RL-01 19 14204506 14204520 CCCATTCTTGAGGTT - PRKACA In_Frame_Del p.N284_G288del 0.19 TCGA-IN-A6RL-01 19 19136841 19136841 C A SUGP2 Nonsense_Mutation p.E106* 0.55 TCGA-IN-A6RL-01 19 22951199 22951199 A G ZNF99 Missense_Mutation p.I45T 0.10 deleterious(0.03) benign(0.041) TCGA-IN-A6RL-01 19 34887294 34887294 G T GPI Missense_Mutation p.G395V 0.06 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-IN-A6RL-01 19 35232140 35232140 T A ZNF181 Missense_Mutation p.I285K 0.32 tolerated(0.19) probably_damaging(0.991) TCGA-IN-A6RL-01 19 3656550 3656550 G A PIP5K1C Silent p.S158S 0.11 TCGA-IN-A6RL-01 19 37441105 37441105 T C ZNF568 Silent p.I350I 0.32 TCGA-IN-A6RL-01 19 37619288 37619288 T C ZNF420 Silent p.H465H 0.07 TCGA-IN-A6RL-01 19 3811318 3811318 C A ZFR2 Missense_Mutation p.K763N 0.55 deleterious(0.03) benign(0.016) TCGA-IN-A6RL-01 19 41596368 41596368 A G CYP2A13 Missense_Mutation p.I185V 0.07 tolerated(0.27) benign(0.011) TCGA-IN-A6RL-01 19 42566669 42566669 G A GRIK5 Missense_Mutation p.S160L 0.32 deleterious(0.01) possibly_damaging(0.518) TCGA-IN-A6RL-01 19 44351314 44351314 T G ZNF283 Silent p.S187S 0.23 TCGA-IN-A6RL-01 19 44570956 44570956 C A ZNF223 Missense_Mutation p.F325L 0.05 deleterious(0) probably_damaging(0.961) TCGA-IN-A6RL-01 19 44777763 44777763 G A ZNF233 Missense_Mutation p.G317D 0.30 tolerated(1) benign(0.001) TCGA-IN-A6RL-01 19 51325225 51325225 T C KLK1 Intron 0.25 TCGA-IN-A6RL-01 19 51528880 51528880 A C KLK11 Missense_Mutation p.I35S 0.25 deleterious(0.01) benign(0.08) TCGA-IN-A6RL-01 19 51728802 51728802 A C CD33 Missense_Mutation p.R122S 0.14 tolerated(0.05) benign(0.335) TCGA-IN-A6RL-01 19 51875207 51875207 G T NKG7 Silent p.L142L 0.07 TCGA-IN-A6RL-01 19 52033998 52033998 A T SIGLEC6 Missense_Mutation p.C215S 0.18 deleterious(0) probably_damaging(0.999) TCGA-IN-A6RL-01 19 52091293 52091293 C A ZNF175 Missense_Mutation p.S570Y 0.08 tolerated(0.06) probably_damaging(0.964) TCGA-IN-A6RL-01 19 52537838 52537838 C T ZNF432 Missense_Mutation p.R365Q 0.10 deleterious(0.03) benign(0.19) TCGA-IN-A6RL-01 19 53014933 53014933 T C ZNF578 Silent p.G433G 0.30 TCGA-IN-A6RL-01 19 53015194 53015194 T G ZNF578 Missense_Mutation p.F520L 0.18 deleterious(0) probably_damaging(0.981) TCGA-IN-A6RL-01 19 53058569 53058569 C A ZNF808 Missense_Mutation p.F800L 0.06 deleterious(0.01) probably_damaging(0.991) TCGA-IN-A6RL-01 19 54080198 54080198 G T ZNF331 Missense_Mutation p.E128D 0.09 tolerated(0.05) benign(0.002) TCGA-IN-A6RL-01 19 54255697 54255697 G T MIR519A1 RNA 0.05 TCGA-IN-A6RL-01 19 55175832 55175832 C A LILRB4 Missense_Mutation p.P184H 0.09 deleterious(0) possibly_damaging(0.732) TCGA-IN-A6RL-01 19 55614869 55614869 C T PPP1R12C Silent p.L213L 0.10 TCGA-IN-A6RL-01 19 55670584 55670584 T G DNAAF3 Missense_Mutation p.E558A 0.38 tolerated_low_confidence(0.11) benign(0.019) TCGA-IN-A6RL-01 19 56226483 56226483 A G NLRP9 Silent p.D813D 0.06 TCGA-IN-A6RL-01 19 56372862 56372862 T C NLRP4 Missense_Mutation p.V656A 0.13 tolerated(0.9) benign(0.004) TCGA-IN-A6RL-01 19 57954666 57954666 G A ZNF749 Nonsense_Mutation p.W50* 0.38 TCGA-IN-A6RL-01 19 57985304 57985304 C G ZNF772 Missense_Mutation p.E270Q 0.05 deleterious(0.02) possibly_damaging(0.47) TCGA-IN-A6RL-01 19 9413055 9413055 T G ZNF699 Silent p.L58L 0.11 TCGA-IN-A6RL-01 1 111060293 111060293 G A KCNA10 Missense_Mutation p.R373W 0.39 deleterious(0) probably_damaging(0.991) TCGA-IN-A6RL-01 1 112999498 112999498 G A CTTNBP2NL Missense_Mutation p.A462T 0.11 deleterious(0) probably_damaging(0.998) TCGA-IN-A6RL-01 1 114438183 114438183 T C AP4B1 Intron 0.10 TCGA-IN-A6RL-01 1 115218568 115218568 A T AMPD1 Missense_Mutation p.I515N 0.12 deleterious(0) probably_damaging(0.997) TCGA-IN-A6RL-01 1 145116781 145116781 C T SEC22B RNA 0.62 TCGA-IN-A6RL-01 1 150957153 150957153 G C ANXA9 Splice_Site p.X158_splice 0.12 TCGA-IN-A6RL-01 1 150981066 150981066 A T PRUNE 5'UTR 0.07 TCGA-IN-A6RL-01 1 151137759 151137759 G A LYSMD1 5'UTR 0.12 TCGA-IN-A6RL-01 1 152484003 152484003 C T LCE5A 5'UTR 0.05 TCGA-IN-A6RL-01 1 152856912 152856935 CAAAACACAGTAAATGCTGCCCAG - SMCP In_Frame_Del p.H7_K14del 0.15 TCGA-IN-A6RL-01 1 153279729 153279729 C T PGLYRP3 Missense_Mutation p.V24I 0.27 tolerated(0.18) benign(0.017) TCGA-IN-A6RL-01 1 154317472 154317472 A G ATP8B2 Missense_Mutation p.E804G 0.15 deleterious(0.03) probably_damaging(0.995) TCGA-IN-A6RL-01 1 155231524 155231524 T C SCAMP3 Missense_Mutation p.D23G 0.12 deleterious(0) probably_damaging(0.999) TCGA-IN-A6RL-01 1 155264506 155264506 G A PKLR Silent p.G244G 0.08 TCGA-IN-A6RL-01 1 155850290 155850290 G T SYT11 Splice_Site p.X288_splice 0.10 TCGA-IN-A6RL-01 1 156535837 156535837 G A IQGAP3 Silent p.A114A 0.11 TCGA-IN-A6RL-01 1 158045957 158045957 A T KIRREL Missense_Mutation p.Q36L 0.08 deleterious(0) benign(0.438) TCGA-IN-A6RL-01 1 158326462 158326462 T G CD1E Intron 0.14 TCGA-IN-A6RL-01 1 158725382 158725382 A G OR6K6 Silent p.E259E 0.07 TCGA-IN-A6RL-01 1 159036059 159036059 A G AIM2 Missense_Mutation p.C153R 0.11 tolerated(0.24) benign(0) TCGA-IN-A6RL-01 1 159176106 159176106 G T DARC Missense_Mutation p.A295S 0.05 deleterious(0.04) possibly_damaging(0.618) TCGA-IN-A6RL-01 1 160147329 160147329 G T ATP1A4 Nonsense_Mutation p.G871* 0.10 TCGA-IN-A6RL-01 1 160718039 160718039 G T SLAMF7 Silent p.V37V 0.24 TCGA-IN-A6RL-01 1 160797585 160797585 T G LY9 Silent p.P649P 0.04 TCGA-IN-A6RL-01 1 160969679 160969679 C T F11R Silent p.V227V 0.24 TCGA-IN-A6RL-01 1 161093968 161093968 G T DEDD Missense_Mutation p.H95Q 0.40 deleterious(0) probably_damaging(0.939) TCGA-IN-A6RL-01 1 169346076 169346076 C A BLZF1 Missense_Mutation p.F109L 0.14 tolerated_low_confidence(0.73) benign(0) TCGA-IN-A6RL-01 1 171289014 171289014 C G FMO4 Missense_Mutation p.S17C 0.17 tolerated(0.14) benign(0.202) TCGA-IN-A6RL-01 1 190195247 190195247 G T BRINP3 Missense_Mutation p.T309N 0.12 tolerated(0.06) benign(0.05) TCGA-IN-A6RL-01 1 19408108 19408108 A T UBR4 Intron 0.09 TCGA-IN-A6RL-01 1 196303167 196303167 C T KCNT2 Missense_Mutation p.D603N 0.16 tolerated(0.98) benign(0.036) TCGA-IN-A6RL-01 1 196928034 196928034 A G CFHR2 Missense_Mutation p.I213V 0.37 tolerated(0.44) benign(0.023) TCGA-IN-A6RL-01 1 201054639 201054639 G A CACNA1S Silent p.L359L 0.16 TCGA-IN-A6RL-01 1 203691676 203691676 C A ATP2B4 Silent p.T961T 0.15 TCGA-IN-A6RL-01 1 207751308 207751308 A G CR1 Missense_Mutation p.T1566A 0.13 deleterious(0) benign(0.126) TCGA-IN-A6RL-01 1 209905824 209905824 G T HSD11B1 Missense_Mutation p.K187N 0.13 deleterious(0) probably_damaging(1) TCGA-IN-A6RL-01 1 210415406 210415406 C A SERTAD4 Silent p.I265I 0.44 TCGA-IN-A6RL-01 1 21268098 21268098 A G EIF4G3 Missense_Mutation p.C467R 0.09 tolerated_low_confidence(0.57) benign(0.239) TCGA-IN-A6RL-01 1 216172286 216172286 G A USH2A Silent p.F2200F 0.36 TCGA-IN-A6RL-01 1 216424365 216424365 G T USH2A Missense_Mutation p.L683I 0.27 probably_damaging(0.989) TCGA-IN-A6RL-01 1 21938267 21938267 C T RAP1GAP Missense_Mutation p.A283T 0.08 deleterious(0.01) benign(0.416) TCGA-IN-A6RL-01 1 220142257 220142257 T G EPRS Missense_Mutation p.K1477T 0.38 deleterious(0) probably_damaging(0.98) TCGA-IN-A6RL-01 1 223178510 223178510 A G DISP1 Silent p.E1257E 0.05 TCGA-IN-A6RL-01 1 228004950 228004950 G C PRSS38 Missense_Mutation p.V118L 0.16 tolerated(0.16) possibly_damaging(0.496) TCGA-IN-A6RL-01 1 228433248 228433248 C G OBSCN Missense_Mutation p.L1298V 0.08 probably_damaging(0.999) TCGA-IN-A6RL-01 1 235916434 235916434 G T LYST Missense_Mutation p.S2457Y 0.12 deleterious(0) probably_damaging(0.996) TCGA-IN-A6RL-01 1 236647437 236647437 C A EDARADD 3'Flank 0.06 TCGA-IN-A6RL-01 1 236732406 236732406 T C HEATR1 Missense_Mutation p.I1323V 0.11 tolerated(0.18) benign(0.02) TCGA-IN-A6RL-01 1 23695955 23695955 T C C1orf213 Silent p.V55V 0.48 TCGA-IN-A6RL-01 1 23696008 23696008 T C C1orf213 Missense_Mutation p.V73A 0.31 tolerated_low_confidence(0.33) benign(0.001) TCGA-IN-A6RL-01 1 237001741 237001741 T G MTR Missense_Mutation p.F453V 0.21 deleterious(0) probably_damaging(1) TCGA-IN-A6RL-01 1 241798634 241798634 T C CHML Silent p.L145L 0.13 TCGA-IN-A6RL-01 1 243809287 243809287 C A AKT3 Nonsense_Mutation p.E113* 0.06 TCGA-IN-A6RL-01 1 247769276 247769276 T C OR2G3 Missense_Mutation p.L130P 0.04 deleterious(0) probably_damaging(1) TCGA-IN-A6RL-01 1 25783150 25783150 G T TMEM57 Silent p.G160G 0.07 TCGA-IN-A6RL-01 1 32222880 32222880 A C BAI2 Intron 0.06 TCGA-IN-A6RL-01 1 41512187 41512187 A C SCMH1 Missense_Mutation p.C454G 0.15 deleterious(0) probably_damaging(0.992) TCGA-IN-A6RL-01 1 57192191 57192191 T C C1orf168 Missense_Mutation p.N620S 0.09 tolerated(0.07) benign(0.228) TCGA-IN-A6RL-01 1 6646057 6646057 T G ZBTB48 Missense_Mutation p.H337Q 0.13 deleterious(0) probably_damaging(1) TCGA-IN-A6RL-01 1 67099768 67099769 - A SGIP1 Intron 0.46 TCGA-IN-A6RL-01 1 76226965 76226965 A C ACADM Missense_Mutation p.L372F 0.10 tolerated(0.07) benign(0.05) TCGA-IN-A6RL-01 1 8074268 8074268 T C ERRFI1 Missense_Mutation p.T131A 0.47 deleterious(0.02) possibly_damaging(0.893) TCGA-IN-A6RL-01 1 85816110 85816110 C T DDAH1 Silent p.Q195Q 0.10 TCGA-IN-A6RL-01 1 85817200 85817200 C A DDAH1 Missense_Mutation p.D156Y 0.10 deleterious(0) probably_damaging(0.936) TCGA-IN-A6RL-01 1 9097748 9097748 A C SLC2A5 Missense_Mutation p.F468C 0.21 deleterious(0) probably_damaging(0.997) TCGA-IN-A6RL-01 1 93620428 93620428 G C TMED5 Missense_Mutation p.I163M 0.05 tolerated(0.25) benign(0.141) TCGA-IN-A6RL-01 20 18541299 18541299 C G SEC23B Missense_Mutation p.T740S 0.06 tolerated(1) benign(0) TCGA-IN-A6RL-01 20 21312984 21312984 T A XRN2 Missense_Mutation p.F255Y 0.41 deleterious(0.01) probably_damaging(1) TCGA-IN-A6RL-01 20 33122455 33122455 G A DYNLRB1 Missense_Mutation p.D35N 0.21 tolerated(0.07) benign(0.25) TCGA-IN-A6RL-01 20 34320013 34320013 C G RBM39 Missense_Mutation p.R49T 0.05 tolerated(0.14) benign(0.227) TCGA-IN-A6RL-01 20 34765875 34765875 A T EPB41L1 Missense_Mutation p.K115I 0.12 deleterious(0) probably_damaging(0.999) TCGA-IN-A6RL-01 20 35436976 35436976 C G SOGA1 Missense_Mutation p.W918C 0.09 tolerated(0.25) benign(0.08) TCGA-IN-A6RL-01 20 3641466 3641466 G A GFRA4 Missense_Mutation p.R173C 0.29 tolerated(0.05) benign(0.019) TCGA-IN-A6RL-01 20 3726148 3726148 C A HSPA12B Silent p.T154T 0.05 TCGA-IN-A6RL-01 20 42697308 42697308 A G TOX2 Silent p.K501K 0.34 TCGA-IN-A6RL-01 20 43938247 43938247 C T RBPJL Missense_Mutation p.R58C 0.25 deleterious(0) benign(0.015) TCGA-IN-A6RL-01 20 44515369 44515369 G C SPATA25 Silent p.L157L 0.06 TCGA-IN-A6RL-01 20 47351100 47351100 C A PREX1 Missense_Mutation p.V168L 0.06 tolerated(0.15) possibly_damaging(0.547) TCGA-IN-A6RL-01 20 5283350 5283350 C T PROKR2 Missense_Mutation p.R164Q 0.36 deleterious(0) probably_damaging(0.969) TCGA-IN-A6RL-01 20 61574919 61574919 G T GID8 Missense_Mutation p.A130S 0.11 tolerated(0.33) benign(0.058) TCGA-IN-A6RL-01 20 62577873 62577873 G C UCKL1 Missense_Mutation p.I79M 0.06 deleterious(0.01) possibly_damaging(0.86) TCGA-IN-A6RL-01 20 855036 855036 G T ANGPT4 Missense_Mutation p.S414R 0.34 deleterious(0.02) possibly_damaging(0.519) TCGA-IN-A6RL-01 21 10906885 10906885 A C TPTE 3'UTR 0.06 TCGA-IN-A6RL-01 21 10908859 10908859 A G TPTE Missense_Mutation p.F496L 0.07 deleterious(0) probably_damaging(0.986) TCGA-IN-A6RL-01 21 18937762 18937762 C T CXADR Missense_Mutation p.P284S 0.10 deleterious(0.04) possibly_damaging(0.468) TCGA-IN-A6RL-01 21 30698621 30698621 T G BACH1 Missense_Mutation p.L159R 0.06 tolerated(0.29) benign(0.01) TCGA-IN-A6RL-01 21 38845075 38845075 A G DYRK1A Missense_Mutation p.M34V 0.05 tolerated_low_confidence(0.12) benign(0.005) TCGA-IN-A6RL-01 21 43221520 43221520 C T PRDM15 Silent p.T1468T 0.06 TCGA-IN-A6RL-01 21 45978444 45978444 C G KRTAP10-3 Missense_Mutation p.C52S 0.08 deleterious(0.01) unknown(0) TCGA-IN-A6RL-01 21 46117590 46117590 G C KRTAP10-12 Missense_Mutation p.K158N 0.08 deleterious(0) unknown(0) TCGA-IN-A6RL-01 22 20394552 20394552 A G PI4KAP1 RNA 0.10 TCGA-IN-A6RL-01 22 21336843 21336843 C A LZTR1 Missense_Mutation p.D61E 0.49 tolerated(0.22) benign(0.132) TCGA-IN-A6RL-01 22 22569423 22569423 C A IGLV10-54 Missense_Mutation p.L39I 0.13 tolerated_low_confidence(1) benign(0.024) TCGA-IN-A6RL-01 22 24125734 24125734 A G AP000349.1 Missense_Mutation p.W138R 0.09 unknown(0) TCGA-IN-A6RL-01 22 30890901 30890901 C A SEC14L4 Silent p.G157G 0.21 TCGA-IN-A6RL-01 22 32644748 32644748 A G SLC5A4 Silent p.P118P 0.10 TCGA-IN-A6RL-01 22 35719502 35719502 C T TOM1 Missense_Mutation p.A127V 0.06 deleterious(0) probably_damaging(0.997) TCGA-IN-A6RL-01 22 36710282 36710282 C G MYH9 Missense_Mutation p.E488Q 0.21 benign(0.419) TCGA-IN-A6RL-01 22 41077140 41077140 C A MCHR1 Silent p.L159L 0.10 TCGA-IN-A6RL-01 22 41726037 41726037 T G ZC3H7B Missense_Mutation p.V152G 0.40 deleterious(0) possibly_damaging(0.705) TCGA-IN-A6RL-01 2 100625366 100625366 G A AFF3 Missense_Mutation p.R53W 0.16 deleterious(0) probably_damaging(1) TCGA-IN-A6RL-01 2 101644883 101644883 T C TBC1D8 Missense_Mutation p.H730R 0.05 tolerated(0.07) benign(0.008) TCGA-IN-A6RL-01 2 102441785 102441785 T G MAP4K4 Missense_Mutation p.V104G 0.51 deleterious_low_confidence(0) unknown(0) TCGA-IN-A6RL-01 2 107459501 107459501 G A ST6GAL2 Silent p.G311G 0.35 TCGA-IN-A6RL-01 2 108488420 108488420 A C RGPD4 Missense_Mutation p.E1320D 0.08 tolerated(0.22) probably_damaging(0.989) TCGA-IN-A6RL-01 2 113940884 113940884 C T PSD4 Missense_Mutation p.P284L 0.08 tolerated_low_confidence(0.09) benign(0.011) TCGA-IN-A6RL-01 2 128341753 128341753 A T MYO7B Missense_Mutation p.Q467L 0.15 deleterious(0.05) benign(0.243) TCGA-IN-A6RL-01 2 141114004 141114004 C A LRP1B Nonsense_Mutation p.G3813* 0.09 TCGA-IN-A6RL-01 2 160804011 160804011 A T PLA2R1 Missense_Mutation p.F1257I 0.47 deleterious(0.01) possibly_damaging(0.902) TCGA-IN-A6RL-01 2 165947640 165947640 A T SCN3A Missense_Mutation p.S1675T 0.08 tolerated(0.09) probably_damaging(0.992) TCGA-IN-A6RL-01 2 168105470 168105470 C T XIRP2 Missense_Mutation p.S2523L 0.28 probably_damaging(0.992) TCGA-IN-A6RL-01 2 171509511 171509511 T G MYO3B Missense_Mutation p.D1302E 0.07 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-IN-A6RL-01 2 175432672 175432672 G T WIPF1 Missense_Mutation p.P420H 0.21 deleterious(0) probably_damaging(0.994) TCGA-IN-A6RL-01 2 179260189 179260189 A G OSBPL6 Missense_Mutation p.D928G 0.44 deleterious(0.04) benign(0.366) TCGA-IN-A6RL-01 2 179426506 179426506 C T TTN Missense_Mutation p.R28118H 0.10 TCGA-IN-A6RL-01 2 179730617 179730617 G T CCDC141 Missense_Mutation p.N867K 0.05 tolerated(0.1) benign(0.049) TCGA-IN-A6RL-01 2 191841684 191841684 G A STAT1 Silent p.I647I 0.08 TCGA-IN-A6RL-01 2 196726635 196726635 T C DNAH7 Silent p.S2514S 0.09 TCGA-IN-A6RL-01 2 198570914 198570914 T C MARS2 Missense_Mutation p.L262S 0.51 deleterious(0) probably_damaging(0.992) TCGA-IN-A6RL-01 2 198949122 198949122 T C PLCL1 Missense_Mutation p.L294P 0.08 tolerated(0.24) benign(0.005) TCGA-IN-A6RL-01 2 202252648 202252648 G A TRAK2 Missense_Mutation p.R492C 0.05 deleterious(0) probably_damaging(1) TCGA-IN-A6RL-01 2 202900333 202900333 C T FZD7 Silent p.D321D 0.06 TCGA-IN-A6RL-01 2 20455071 20455071 C T PUM2 Missense_Mutation p.C885Y 0.06 deleterious(0) probably_damaging(1) TCGA-IN-A6RL-01 2 207655404 207655404 G A FASTKD2 Silent p.V669V 0.37 TCGA-IN-A6RL-01 2 211464283 211464283 G T CPS1 Missense_Mutation p.C522F 0.08 deleterious(0) probably_damaging(1) TCGA-IN-A6RL-01 2 213872801 213872801 C G IKZF2 Missense_Mutation p.K288N 0.15 deleterious(0.04) probably_damaging(0.953) TCGA-IN-A6RL-01 2 215896686 215896686 G T ABCA12 Intron 0.33 TCGA-IN-A6RL-01 2 220422903 220422903 C A OBSL1 Intron 0.26 TCGA-IN-A6RL-01 2 223066836 223066836 G A PAX3 Missense_Mutation p.T416I 0.12 tolerated_low_confidence(0.06) probably_damaging(0.997) TCGA-IN-A6RL-01 2 223169089 223169089 G T CCDC140 Missense_Mutation p.K156N 0.19 deleterious_low_confidence(0) unknown(0) TCGA-IN-A6RL-01 2 228563931 228563931 A G SLC19A3 Missense_Mutation p.M167T 0.08 deleterious(0.04) benign(0.003) TCGA-IN-A6RL-01 2 231331838 231331838 T C SP100 Missense_Mutation p.I400T 0.05 tolerated(0.5) possibly_damaging(0.677) TCGA-IN-A6RL-01 2 232389779 232389779 G A NMUR1 Missense_Mutation p.A419V 0.12 tolerated_low_confidence(0.22) benign(0.01) TCGA-IN-A6RL-01 2 233345162 233345162 C T ECEL1 Silent p.S725S 0.07 TCGA-IN-A6RL-01 2 237123006 237123006 T A ASB18 Missense_Mutation p.K367M 0.23 deleterious(0) possibly_damaging(0.735) TCGA-IN-A6RL-01 2 241621881 241621881 G T AQP12B Missense_Mutation p.A125D 0.48 deleterious(0) probably_damaging(0.923) TCGA-IN-A6RL-01 2 26687825 26687825 T G OTOF Missense_Mutation p.K1624N 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-IN-A6RL-01 2 28113194 28113194 G C RBKS Missense_Mutation p.P7A 0.22 deleterious_low_confidence(0.02) benign(0.165) TCGA-IN-A6RL-01 2 29420411 29420411 G T ALK Missense_Mutation p.P1357H 0.46 deleterious(0) probably_damaging(1) TCGA-IN-A6RL-01 2 31628782 31628782 T G XDH Silent p.R31R 0.50 TCGA-IN-A6RL-01 2 47132540 47132540 A C MCFD2 3'UTR 0.12 TCGA-IN-A6RL-01 2 71908203 71908203 G A DYSF Missense_Mutation p.D2046N 0.09 tolerated(0.05) possibly_damaging(0.723) TCGA-IN-A6RL-01 2 85581535 85581535 A C RETSAT Silent p.P32P 0.22 TCGA-IN-A6RL-01 2 88887534 88887534 A G EIF2AK3 Silent p.S465S 0.33 TCGA-IN-A6RL-01 2 99636878 99636878 C T TSGA10 Missense_Mutation p.R561K 0.35 deleterious(0.01) possibly_damaging(0.671) TCGA-IN-A6RL-01 2 99978090 99978090 G A EIF5B Silent p.K242K 0.55 TCGA-IN-A6RL-01 3 108394649 108394649 C A DZIP3 Missense_Mutation p.Q904K 0.31 tolerated(0.14) benign(0.049) TCGA-IN-A6RL-01 3 108724096 108724096 A C MORC1 Missense_Mutation p.F612V 0.31 tolerated(0.48) benign(0.004) TCGA-IN-A6RL-01 3 112709897 112709897 T G GTPBP8 Silent p.P17P 0.11 TCGA-IN-A6RL-01 3 113376998 113376998 T C KIAA2018 Silent p.K1177K 0.11 TCGA-IN-A6RL-01 3 119582417 119582417 T C GSK3B Silent p.A328A 0.10 TCGA-IN-A6RL-01 3 121187213 121187213 T C POLQ Missense_Mutation p.T2262A 0.04 tolerated(0.08) benign(0.015) TCGA-IN-A6RL-01 3 121972922 121972932 CAATCTGTAGA - CASR 5'UTR 0.11 TCGA-IN-A6RL-01 3 123419633 123419633 C T MYLK Silent p.Q894Q 0.08 TCGA-IN-A6RL-01 3 137483701 137483701 G T SOX14 Missense_Mutation p.K25N 0.34 deleterious(0) probably_damaging(0.999) TCGA-IN-A6RL-01 3 151451910 151451910 A C AADACL2 Missense_Mutation p.E29D 0.29 tolerated(0.17) benign(0.13) TCGA-IN-A6RL-01 3 154146450 154146450 T C GPR149 Missense_Mutation p.K319E 0.12 deleterious(0) possibly_damaging(0.895) TCGA-IN-A6RL-01 3 156423073 156423073 A T TIPARP 3'UTR 0.59 TCGA-IN-A6RL-01 3 164905638 164905638 C A SLITRK3 3'UTR 0.50 TCGA-IN-A6RL-01 3 179529623 179529623 C A PEX5L Nonsense_Mutation p.E374* 0.33 TCGA-IN-A6RL-01 3 184648266 184648266 C A VPS8 Silent p.V936V 0.12 TCGA-IN-A6RL-01 3 196234881 196234881 C A SMCO1 Missense_Mutation p.K174N 0.06 tolerated(0.07) benign(0.017) TCGA-IN-A6RL-01 3 19930051 19930051 A G EFHB Silent p.F606F 0.29 TCGA-IN-A6RL-01 3 21706425 21706425 G C ZNF385D Missense_Mutation p.P40A 0.06 tolerated(0.14) benign(0.066) TCGA-IN-A6RL-01 3 36780211 36780211 G T DCLK3 5'UTR 0.11 TCGA-IN-A6RL-01 3 38647601 38647601 G T SCN5A Missense_Mutation p.F393L 0.11 deleterious(0) probably_damaging(0.992) TCGA-IN-A6RL-01 3 44612512 44612512 G A ZKSCAN7 Missense_Mutation p.C637Y 0.07 deleterious(0) probably_damaging(1) TCGA-IN-A6RL-01 3 45942730 45942730 G T CCR9 Missense_Mutation p.Q150H 0.08 tolerated(0.05) benign(0.429) TCGA-IN-A6RL-01 3 46593061 46593061 G T LRRC2 Silent p.V7V 0.32 TCGA-IN-A6RL-01 3 47361166 47361166 C T KLHL18 Silent p.A51A 0.17 TCGA-IN-A6RL-01 3 49698740 49698740 G T BSN Missense_Mutation p.E3154D 0.15 unknown(0) TCGA-IN-A6RL-01 3 49936321 49936321 T C MST1R Silent p.L509L 0.09 TCGA-IN-A6RL-01 3 50154656 50154656 A G RBM5 Intron 0.09 TCGA-IN-A6RL-01 3 52540765 52540765 G A STAB1 Missense_Mutation p.A630T 0.17 deleterious(0.01) benign(0.407) TCGA-IN-A6RL-01 3 53265525 53265525 T G TKT Missense_Mutation p.K272Q 0.09 tolerated(0.2) benign(0.011) TCGA-IN-A6RL-01 3 53699702 53699702 T C CACNA1D Missense_Mutation p.L261P 0.13 deleterious(0) probably_damaging(0.999) TCGA-IN-A6RL-01 3 53845335 53845335 C G CACNA1D Missense_Mutation p.L2150V 0.11 tolerated_low_confidence(0.31) benign(0.053) TCGA-IN-A6RL-01 3 54537528 54537528 T G CACNA2D3 Missense_Mutation p.F131V 0.41 deleterious(0.05) probably_damaging(0.958) TCGA-IN-A6RL-01 3 58112362 58112362 T C FLNB Silent p.V1365V 0.20 TCGA-IN-A6RL-01 3 62631495 62631495 G T CADPS Silent p.G409G 0.07 TCGA-IN-A6RL-01 3 62631496 62631496 C T CADPS Missense_Mutation p.G409D 0.08 deleterious(0.01) probably_damaging(0.931) TCGA-IN-A6RL-01 3 65376868 65376868 G T MAGI1 Missense_Mutation p.P789T 0.34 deleterious(0.01) probably_damaging(0.996) TCGA-IN-A6RL-01 3 9780897 9780897 G A BRPF1 Missense_Mutation p.E272K 0.49 deleterious(0) probably_damaging(0.992) TCGA-IN-A6RL-01 4 103831632 103831632 C A SLC9B1 Missense_Mutation p.L350F 0.54 deleterious(0) benign(0.403) TCGA-IN-A6RL-01 4 114158238 114158238 G T ANK2 Silent p.L193L 0.49 TCGA-IN-A6RL-01 4 114251488 114251488 G T ANK2 Missense_Mutation p.R996L 0.37 probably_damaging(0.995) TCGA-IN-A6RL-01 4 126241856 126241856 T C FAT4 Silent p.V1430V 0.56 TCGA-IN-A6RL-01 4 128665855 128665855 G T SLC25A31 Missense_Mutation p.L87F 0.05 tolerated(0.07) benign(0.022) TCGA-IN-A6RL-01 4 141607597 141607597 G A TBC1D9 Silent p.I87I 0.07 TCGA-IN-A6RL-01 4 142151341 142151341 C T ZNF330 Missense_Mutation p.S147F 0.08 deleterious(0.04) benign(0.414) TCGA-IN-A6RL-01 4 15054167 15054167 G T CPEB2 Missense_Mutation p.R777L 0.28 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-IN-A6RL-01 4 154514981 154514981 C G KIAA0922 Missense_Mutation p.F651L 0.16 tolerated(0.69) benign(0.024) TCGA-IN-A6RL-01 4 170523788 170523788 T G NEK1 5'UTR 0.14 TCGA-IN-A6RL-01 4 175899290 175899290 A T ADAM29 3'UTR 0.60 TCGA-IN-A6RL-01 4 187073160 187073160 C T FAM149A Missense_Mutation p.A16V 0.08 deleterious(0.03) benign(0.395) TCGA-IN-A6RL-01 4 25005761 25005761 T A LGI2 Missense_Mutation p.D317V 0.25 tolerated(0.06) probably_damaging(0.926) TCGA-IN-A6RL-01 4 25030156 25030156 A C LGI2 Missense_Mutation p.F81C 0.13 deleterious(0.02) probably_damaging(0.997) TCGA-IN-A6RL-01 4 39269706 39269706 C A WDR19 Missense_Mutation p.S1118Y 0.27 tolerated(0.74) benign(0.269) TCGA-IN-A6RL-01 4 46060558 46060558 T G GABRG1 Missense_Mutation p.Y236S 0.06 tolerated(0.05) benign(0.418) TCGA-IN-A6RL-01 4 48564917 48564917 G A FRYL Nonsense_Mutation p.Q1229* 0.11 TCGA-IN-A6RL-01 4 515550 515550 G C PIGG Missense_Mutation p.L478F 0.07 deleterious(0) possibly_damaging(0.842) TCGA-IN-A6RL-01 4 5564798 5564798 A - EVC2 Frame_Shift_Del p.F1235Sfs*24 0.09 TCGA-IN-A6RL-01 4 6064093 6064093 G A JAKMIP1 Silent p.Y502Y 0.31 TCGA-IN-A6RL-01 4 62897184 62897184 T G LPHN3 Silent p.A1081A 0.36 TCGA-IN-A6RL-01 4 71201316 71201316 A G CABS1 Missense_Mutation p.D187G 0.29 tolerated(0.15) benign(0.124) TCGA-IN-A6RL-01 4 71859572 71859572 G A DCK Missense_Mutation p.R7K 0.09 tolerated(0.24) benign(0.044) TCGA-IN-A6RL-01 4 71859575 71859575 G A DCK Missense_Mutation p.S8N 0.10 tolerated(0.34) benign(0.001) TCGA-IN-A6RL-01 4 72425947 72425947 A T SLC4A4 Silent p.G1025G 0.15 TCGA-IN-A6RL-01 4 81884685 81884685 C T C4orf22 Silent p.D224D 0.25 TCGA-IN-A6RL-01 5 10254907 10254907 G C CCT5 Missense_Mutation p.K96N 0.07 deleterious(0.01) benign(0.225) TCGA-IN-A6RL-01 5 108521997 108521997 A G FER Missense_Mutation p.Q767R 0.45 deleterious(0.01) probably_damaging(0.99) TCGA-IN-A6RL-01 5 114469682 114469682 C A TRIM36 Missense_Mutation p.G470V 0.07 deleterious(0.01) possibly_damaging(0.568) TCGA-IN-A6RL-01 5 127626550 127626550 T G FBN2 Missense_Mutation p.N2107H 0.49 tolerated(0.22) benign(0.002) TCGA-IN-A6RL-01 5 13727761 13727761 G C DNAH5 Missense_Mutation p.S3963W 0.25 probably_damaging(0.959) TCGA-IN-A6RL-01 5 13794163 13794163 G A DNAH5 Missense_Mutation p.T2631M 0.07 probably_damaging(0.938) TCGA-IN-A6RL-01 5 138145885 138145885 C T CTNNA1 Silent p.L154L 0.13 TCGA-IN-A6RL-01 5 138655022 138655022 G C MATR3 Splice_Site p.X479_splice 0.08 TCGA-IN-A6RL-01 5 140236921 140236921 G A PCDHA10 Missense_Mutation p.G430S 0.05 deleterious_low_confidence(0.01) probably_damaging(0.951) TCGA-IN-A6RL-01 5 140256389 140256389 G T PCDHA12 Missense_Mutation p.E444D 0.11 tolerated_low_confidence(0.05) benign(0.262) TCGA-IN-A6RL-01 5 140433053 140433053 C G PCDHB1 Silent p.G666G 0.13 TCGA-IN-A6RL-01 5 140711041 140711041 G C PCDHGA1 Missense_Mutation p.V264L 0.10 tolerated_low_confidence(0.09) benign(0.107) TCGA-IN-A6RL-01 5 140720683 140720683 G A PCDHGA2 Silent p.R715R 0.12 TCGA-IN-A6RL-01 5 140865468 140865468 A G PCDHGC4 Missense_Mutation p.Q243R 0.10 deleterious(0.01) benign(0.005) TCGA-IN-A6RL-01 5 149441158 149441158 C T CSF1R Missense_Mutation p.G585D 0.49 deleterious(0) probably_damaging(1) TCGA-IN-A6RL-01 5 149754318 149754318 G A TCOF1 Missense_Mutation p.E408K 0.10 tolerated(0.18) benign(0.023) TCGA-IN-A6RL-01 5 156755028 156755028 C A CYFIP2 Silent p.I683I 0.18 TCGA-IN-A6RL-01 5 15936904 15936904 G A FBXL7 Missense_Mutation p.R362Q 0.33 tolerated(0.36) probably_damaging(0.988) TCGA-IN-A6RL-01 5 160114826 160114826 G C ATP10B Missense_Mutation p.L86V 0.05 deleterious(0.04) benign(0.033) TCGA-IN-A6RL-01 5 179269022 179269034 CTAGATACTTCAG - C5orf45 Frame_Shift_Del p.L108Kfs*73 0.08 TCGA-IN-A6RL-01 5 35763686 35763686 A C SPEF2 Missense_Mutation p.K1228T 0.09 deleterious(0.01) possibly_damaging(0.71) TCGA-IN-A6RL-01 5 52356848 52356848 C T ITGA2 Missense_Mutation p.T477M 0.09 deleterious(0.05) benign(0.105) TCGA-IN-A6RL-01 5 55088539 55088539 C T DDX4 Missense_Mutation p.P458L 0.53 tolerated(0.09) benign(0.227) TCGA-IN-A6RL-01 5 55422885 55422885 G T ANKRD55 Missense_Mutation p.P221T 0.24 deleterious(0.01) possibly_damaging(0.642) TCGA-IN-A6RL-01 5 64814321 64814321 A G CENPK Missense_Mutation p.L264S 0.10 deleterious(0) probably_damaging(1) TCGA-IN-A6RL-01 5 80256739 80256739 G A RASGRF2 Missense_Mutation p.R61H 0.38 deleterious(0.01) probably_damaging(0.965) TCGA-IN-A6RL-01 5 80640734 80640734 A G ACOT12 Silent p.F300F 0.09 TCGA-IN-A6RL-01 5 840758 840758 C G ZDHHC11 Missense_Mutation p.K212N 0.03 tolerated(0.21) benign(0.065) TCGA-IN-A6RL-01 5 864511 864511 T G BRD9 3'UTR 0.48 TCGA-IN-A6RL-01 5 87502910 87502911 - A TMEM161B Frame_Shift_Ins p.F179Lfs*20 0.16 TCGA-IN-A6RL-01 6 10791921 10791921 C A MAK Missense_Mutation p.D435Y 0.20 deleterious(0) possibly_damaging(0.664) TCGA-IN-A6RL-01 6 108041883 108041883 A G SCML4 Intron 0.12 TCGA-IN-A6RL-01 6 111695309 111695309 G A REV3L Missense_Mutation p.P1417S 0.05 tolerated_low_confidence(0.26) benign(0.001) TCGA-IN-A6RL-01 6 117896446 117896446 A T GOPC Missense_Mutation p.L182M 0.36 tolerated(0.15) possibly_damaging(0.507) TCGA-IN-A6RL-01 6 13977656 13977656 A T RNF182 Silent p.P102P 0.48 TCGA-IN-A6RL-01 6 142723187 142723187 A G GPR126 Missense_Mutation p.N579S 0.31 deleterious(0.01) benign(0.122) TCGA-IN-A6RL-01 6 146350981 146350981 T G GRM1 Missense_Mutation p.W110G 0.29 deleterious(0) probably_damaging(0.967) TCGA-IN-A6RL-01 6 152551702 152551702 T G SYNE1 Missense_Mutation p.N7059H 0.30 benign(0.119) TCGA-IN-A6RL-01 6 155561783 155561783 T C TIAM2 Silent p.D1096D 0.09 TCGA-IN-A6RL-01 6 17292454 17292454 A C RBM24 3'UTR 0.13 TCGA-IN-A6RL-01 6 28219399 28219399 G A ZKSCAN4 Silent p.S120S 0.42 TCGA-IN-A6RL-01 6 29080404 29080404 C T OR2J3 Missense_Mutation p.A246V 0.05 deleterious(0) possibly_damaging(0.76) TCGA-IN-A6RL-01 6 29639176 29639176 C T MOG Intron 0.29 TCGA-IN-A6RL-01 6 30630483 30630483 C A DHX16 Nonsense_Mutation p.E489* 0.29 TCGA-IN-A6RL-01 6 31937121 31937121 A G SKIV2L Missense_Mutation p.N1155S 0.57 tolerated(0.77) benign(0.002) TCGA-IN-A6RL-01 6 32035592 32035592 C A TNXB Missense_Mutation p.K2130N 0.06 possibly_damaging(0.544) TCGA-IN-A6RL-01 6 33381854 33381854 C G PHF1 Silent p.G240G 0.37 TCGA-IN-A6RL-01 6 35216374 35216374 C T SCUBE3 Silent p.H958H 0.04 TCGA-IN-A6RL-01 6 36839501 36839501 T A PPIL1 Silent p.T68T 0.06 TCGA-IN-A6RL-01 6 39563954 39563954 A G KIF6 Missense_Mutation p.V241A 0.09 deleterious(0) possibly_damaging(0.582) TCGA-IN-A6RL-01 6 39874468 39874468 G C MOCS1 3'UTR 0.05 TCGA-IN-A6RL-01 6 41166051 41166051 T G TREML2 Missense_Mutation p.I58L 0.04 deleterious(0.02) benign(0.208) TCGA-IN-A6RL-01 6 46766906 46766906 G T MEP1A Missense_Mutation p.A84S 0.17 tolerated(0.44) possibly_damaging(0.531) TCGA-IN-A6RL-01 6 47846142 47846142 G A PTCHD4 Missense_Mutation p.S813F 0.26 deleterious(0) probably_damaging(0.974) TCGA-IN-A6RL-01 6 5368795 5368795 G A FARS2 5'UTR 0.07 TCGA-IN-A6RL-01 6 71138038 71138038 A G FAM135A 5'UTR 0.18 TCGA-IN-A6RL-01 6 7581434 7581434 G C DSP Missense_Mutation p.E1671Q 0.19 probably_damaging(0.99) TCGA-IN-A6RL-01 6 76024842 76024842 G A FILIP1 Silent p.L236L 0.11 TCGA-IN-A6RL-01 6 87726218 87726219 - T HTR1E 3'UTR 0.13 TCGA-IN-A6RL-01 6 90082284 90082284 C A RRAGD Missense_Mutation p.G308V 0.18 tolerated(0.11) benign(0.04) TCGA-IN-A6RL-01 7 100283633 100283633 G T GIGYF1 Missense_Mutation p.P340T 0.11 tolerated(0.54) unknown(0) TCGA-IN-A6RL-01 7 100681119 100681119 C T MUC17 Missense_Mutation p.S2141L 0.07 unknown(0) TCGA-IN-A6RL-01 7 103236988 103236988 C T RELN Missense_Mutation p.G1152S 0.24 tolerated(0.16) benign(0.081) TCGA-IN-A6RL-01 7 105894936 105894936 C A NAMPT Missense_Mutation p.M368I 0.12 tolerated(0.56) benign(0.014) TCGA-IN-A6RL-01 7 110303525 110303525 G A IMMP2L 3'UTR 0.21 TCGA-IN-A6RL-01 7 111379261 111379261 C A DOCK4 Nonsense_Mutation p.E1712* 0.06 TCGA-IN-A6RL-01 7 112115516 112115516 G A IFRD1 Missense_Mutation p.R433Q 0.10 deleterious(0) possibly_damaging(0.452) TCGA-IN-A6RL-01 7 137776528 137776528 T C AKR1D1 Silent p.N92N 0.20 TCGA-IN-A6RL-01 7 138602845 138602845 G A KIAA1549 Silent p.A509A 0.47 TCGA-IN-A6RL-01 7 1484998 1484998 G A MICALL2 Silent p.F236F 0.13 TCGA-IN-A6RL-01 7 150417880 150417880 G A GIMAP1 Missense_Mutation p.R263Q 0.36 tolerated(0.44) benign(0.014) TCGA-IN-A6RL-01 7 150648021 150648021 G T KCNH2 Silent p.I711I 0.11 TCGA-IN-A6RL-01 7 151841796 151841796 A G KMT2C Splice_Site p.X4781_splice 0.38 TCGA-IN-A6RL-01 7 151896453 151896453 T C KMT2C Missense_Mutation p.Y1395C 0.45 benign(0.003) TCGA-IN-A6RL-01 7 21583015 21583015 G A DNAH11 Missense_Mutation p.R51Q 0.36 benign(0.007) TCGA-IN-A6RL-01 7 27134053 27134053 G A HOXA1 3'UTR 0.06 TCGA-IN-A6RL-01 7 27169073 27169073 C T HOXA4 Missense_Mutation p.R245H 0.20 deleterious(0) probably_damaging(1) TCGA-IN-A6RL-01 7 30094403 30094403 A G PLEKHA8 Missense_Mutation p.D292G 0.06 tolerated(0.1) benign(0) TCGA-IN-A6RL-01 7 31912947 31912947 G T PDE1C Missense_Mutation p.F249L 0.07 tolerated(0.51) benign(0.136) TCGA-IN-A6RL-01 7 38424500 38424500 C A AMPH Missense_Mutation p.K669N 0.37 deleterious(0) probably_damaging(0.948) TCGA-IN-A6RL-01 7 44154990 44154992 AAC - POLD2 In_Frame_Del p.C384del 0.19 TCGA-IN-A6RL-01 7 48284211 48284211 A C ABCA13 Missense_Mutation p.N434T 0.10 benign(0.033) TCGA-IN-A6RL-01 7 55238880 55238880 A G EGFR Silent p.P631P 0.23 TCGA-IN-A6RL-01 7 56141899 56141899 A G SUMF2 Silent p.A143A 0.37 TCGA-IN-A6RL-01 7 6476089 6476089 T C DAGLB Missense_Mutation p.E108G 0.05 deleterious(0) probably_damaging(0.998) TCGA-IN-A6RL-01 7 72683315 72683315 C T GTF2IRD2P1 RNA 0.27 TCGA-IN-A6RL-01 7 73605585 73605585 A C EIF4H Intron 0.23 TCGA-IN-A6RL-01 7 73811409 73811409 T C CLIP2 Missense_Mutation p.L909P 0.08 deleterious(0) possibly_damaging(0.894) TCGA-IN-A6RL-01 7 81600133 81600133 G T CACNA2D1 Intron 0.09 TCGA-IN-A6RL-01 7 83029445 83029445 G T SEMA3E Missense_Mutation p.P422Q 0.06 deleterious(0) probably_damaging(1) TCGA-IN-A6RL-01 7 86824042 86824042 A G DMTF1 Missense_Mutation p.I691V 0.07 tolerated_low_confidence(0.12) benign(0.009) TCGA-IN-A6RL-01 7 91632182 91632182 A C AKAP9 Missense_Mutation p.K984T 0.06 probably_damaging(0.97) TCGA-IN-A6RL-01 7 92164028 92164028 A C RBM48 Missense_Mutation p.N254T 0.24 tolerated(0.4) benign(0.002) TCGA-IN-A6RL-01 7 99661834 99661834 A G ZSCAN21 Missense_Mutation p.K339R 0.29 deleterious(0.04) probably_damaging(0.984) TCGA-IN-A6RL-01 8 10469415 10469415 G T RP1L1 Missense_Mutation p.D731E 0.09 benign(0.13) TCGA-IN-A6RL-01 8 10587797 10587797 C A SOX7 Missense_Mutation p.M49I 0.12 deleterious(0) possibly_damaging(0.797) TCGA-IN-A6RL-01 8 110131784 110131784 C A TRHR 3'UTR 0.17 TCGA-IN-A6RL-01 8 116617063 116617063 G A TRPS1 Missense_Mutation p.S378F 0.11 deleterious_low_confidence(0.01) benign(0.311) TCGA-IN-A6RL-01 8 121457414 121457414 C A MRPL13 5'UTR 0.10 TCGA-IN-A6RL-01 8 12879339 12879339 C A KIAA1456 Missense_Mutation p.S384Y 0.10 deleterious(0) possibly_damaging(0.873) TCGA-IN-A6RL-01 8 131073050 131073050 C T ASAP1 Silent p.L989L 0.05 TCGA-IN-A6RL-01 8 131138264 131138264 C G ASAP1 Missense_Mutation p.G485R 0.06 deleterious(0) probably_damaging(0.965) TCGA-IN-A6RL-01 8 133014026 133014026 C A EFR3A Silent p.I726I 0.05 TCGA-IN-A6RL-01 8 139144847 139144847 A C FAM135B Missense_Mutation p.Y1404D 0.38 deleterious(0) probably_damaging(0.987) TCGA-IN-A6RL-01 8 144358979 144358979 G A GLI4 3'UTR 0.42 TCGA-IN-A6RL-01 8 145160829 145160829 C G MAF1 Missense_Mutation p.F47L 0.08 tolerated(0.41) benign(0.04) TCGA-IN-A6RL-01 8 2054318 2054318 T G MYOM2 Missense_Mutation p.L977V 0.21 tolerated(0.14) benign(0.001) TCGA-IN-A6RL-01 8 22102647 22102647 G C POLR3D 5'Flank 0.25 TCGA-IN-A6RL-01 8 2855667 2855667 A C CSMD1 Missense_Mutation p.F2748C 0.25 benign(0.269) TCGA-IN-A6RL-01 8 29203038 29203038 T A DUSP4 Intron 0.32 TCGA-IN-A6RL-01 8 32620762 32620762 G T NRG1 Intron 0.25 TCGA-IN-A6RL-01 8 39466563 39466563 C A ADAM18 Nonsense_Mutation p.S64* 0.21 TCGA-IN-A6RL-01 8 39626980 39626981 - A ADAM2 Frame_Shift_Ins p.K382Qfs*8 0.14 TCGA-IN-A6RL-01 8 53573171 53573171 C A RB1CC1 Missense_Mutation p.W558C 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-IN-A6RL-01 8 53573172 53573172 C G RB1CC1 Missense_Mutation p.W558S 0.12 tolerated(0.14) probably_damaging(0.998) TCGA-IN-A6RL-01 8 54163481 54163481 G A OPRK1 Silent p.N39N 0.13 TCGA-IN-A6RL-01 8 55534839 55534839 A G RP1 Missense_Mutation p.S260G 0.13 tolerated(0.12) benign(0.006) TCGA-IN-A6RL-01 9 109688310 109688310 A T ZNF462 Missense_Mutation p.K706I 0.07 probably_damaging(0.996) TCGA-IN-A6RL-01 9 111798579 111798579 G A TMEM245 Missense_Mutation p.T769I 0.23 tolerated(0.15) benign(0.025) TCGA-IN-A6RL-01 9 112004042 112004042 C G EPB41L4B Intron 0.09 TCGA-IN-A6RL-01 9 112898869 112898869 A G PALM2-AKAP2 Missense_Mutation p.S349G 0.06 tolerated(0.29) benign(0.005) TCGA-IN-A6RL-01 9 114919827 114919827 C A SUSD1 Missense_Mutation p.C57F 0.23 deleterious(0) probably_damaging(0.999) TCGA-IN-A6RL-01 9 117568130 117568130 G A TNFSF15 Missense_Mutation p.L55F 0.06 tolerated(0.09) benign(0.085) TCGA-IN-A6RL-01 9 119382702 119382702 C A ASTN2 Missense_Mutation p.M980I 0.13 deleterious(0) unknown(0) TCGA-IN-A6RL-01 9 123935659 123935659 C G CNTRL Missense_Mutation p.L2186V 0.07 benign(0.033) TCGA-IN-A6RL-01 9 125682214 125682214 T G ZBTB26 5'UTR 0.28 TCGA-IN-A6RL-01 9 131709668 131709668 G A DOLK 5'UTR 0.43 TCGA-IN-A6RL-01 9 134322566 134322566 G T PRRC2B Missense_Mutation p.R317I 0.11 deleterious(0) probably_damaging(0.998) TCGA-IN-A6RL-01 9 134397514 134397514 G T POMT1 Nonsense_Mutation p.E658* 0.04 TCGA-IN-A6RL-01 9 139945372 139945372 C A ENTPD2 Silent p.L252L 0.08 TCGA-IN-A6RL-01 9 15578878 15578878 T C CCDC171 Missense_Mutation p.L70P 0.24 deleterious(0) probably_damaging(1) TCGA-IN-A6RL-01 9 32631412 32631412 G A TAF1L Missense_Mutation p.P1389L 0.28 deleterious(0.02) benign(0.057) TCGA-IN-A6RL-01 9 35560741 35560741 G A RUSC2 Silent p.S1368S 0.60 TCGA-IN-A6RL-01 9 35825636 35825636 C A FAM221B Nonsense_Mutation p.E175* 0.15 TCGA-IN-A6RL-01 9 35853659 35853659 A T TMEM8B Missense_Mutation p.H414L 0.12 deleterious(0) probably_damaging(0.998) TCGA-IN-A6RL-01 9 3898888 3898889 - T GLIS3 Intron 0.28 TCGA-IN-A6RL-01 9 5923017 5923017 T G KIAA2026 Silent p.S993S 0.12 TCGA-IN-A6RL-01 9 77257500 77257500 G A RORB Missense_Mutation p.E136K 0.34 tolerated(0.47) benign(0.018) TCGA-IN-A6RL-01 9 79323970 79323970 T C PRUNE2 Missense_Mutation p.S1074G 0.15 deleterious(0.02) probably_damaging(0.971) TCGA-IN-A6RL-01 9 79324973 79324973 C T PRUNE2 Silent p.P739P 0.40 TCGA-IN-A6RL-01 9 8471055 8471055 C A PTPRD Missense_Mutation p.K1148N 0.16 tolerated(0.17) possibly_damaging(0.771) TCGA-IN-A6RL-01 9 8471066 8471066 C T PTPRD Missense_Mutation p.V1145M 0.18 deleterious(0.02) probably_damaging(0.947) TCGA-IN-A6RL-01 9 85928585 85928585 T C FRMD3 Missense_Mutation p.H225R 0.27 deleterious(0) probably_damaging(0.998) TCGA-IN-A6RL-01 X 107418963 107418963 T G COL4A6 Silent p.G918G 0.19 TCGA-IN-A6RL-01 X 118284425 118284425 G A KIAA1210 Nonsense_Mutation p.R40* 0.23 TCGA-IN-A6RL-01 X 119387538 119387538 A C ZBTB33 Missense_Mutation p.I90L 0.10 tolerated(0.17) benign(0.013) TCGA-IN-A6RL-01 X 123785795 123785795 C T TENM1 Missense_Mutation p.M516I 0.10 tolerated(0.17) benign(0) TCGA-IN-A6RL-01 X 125299513 125299513 C T DCAF12L2 Missense_Mutation p.R132H 0.07 tolerated(0.27) benign(0.028) TCGA-IN-A6RL-01 X 12736295 12736295 G T FRMPD4 Missense_Mutation p.R1117I 0.26 deleterious_low_confidence(0) possibly_damaging(0.578) TCGA-IN-A6RL-01 X 129480611 129480611 T G SLC25A14 Missense_Mutation p.F88C 0.34 deleterious(0.01) probably_damaging(0.926) TCGA-IN-A6RL-01 X 135738551 135738551 G C CD40LG Missense_Mutation p.S128T 0.05 deleterious(0.03) possibly_damaging(0.838) TCGA-IN-A6RL-01 X 140995043 140995043 G T MAGEC1 Missense_Mutation p.G618V 0.24 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-IN-A6RL-01 X 14883088 14883088 A C FANCB Missense_Mutation p.V182G 0.14 tolerated(0.07) benign(0.176) TCGA-IN-A6RL-01 X 150911645 150911645 G C CNGA2 Missense_Mutation p.D224H 0.10 deleterious(0) probably_damaging(1) TCGA-IN-A6RL-01 X 37028319 37028319 G T FAM47C Missense_Mutation p.E612D 0.19 tolerated(0.2) benign(0.002) TCGA-IN-A6RL-01 X 47919290 47919290 A G ZNF630 Missense_Mutation p.C181R 0.26 tolerated(0.13) possibly_damaging(0.691) TCGA-IN-A6RL-01 X 50653945 50653945 C T BMP15 Silent p.G54G 0.56 TCGA-IN-A6RL-01 X 51487185 51487185 G T GSPT2 Nonsense_Mutation p.E155* 0.56 TCGA-IN-A6RL-01 X 54784081 54784081 C A ITIH6 Missense_Mutation p.R809I 0.47 tolerated(0.16) benign(0.088) TCGA-IN-A6RL-01 X 83128517 83128517 T C CYLC1 Silent p.N267N 0.18 TCGA-IN-A6RL-01 X 85128195 85128195 T C CHM Silent p.P544P 0.39 TCGA-IN-A6RL-01 X 85769380 85769380 T G DACH2 Missense_Mutation p.L209R 0.48 deleterious(0) probably_damaging(0.973) TCGA-IN-A6RL-01 X 89177299 89177299 A C TGIF2LX Missense_Mutation p.H72P 0.23 deleterious(0) probably_damaging(0.995) TCGA-IN-A6RN-01 10 103793096 103793096 T A C10orf76 Missense_Mutation p.T35S 0.23 deleterious(0.03) benign(0.007) TCGA-IN-A6RN-01 10 38343351 38343351 C G ZNF33A Missense_Mutation p.S100C 0.09 deleterious(0.05) possibly_damaging(0.698) TCGA-IN-A6RN-01 10 70706509 70706509 G T DDX50 3'UTR 0.27 TCGA-IN-A6RN-01 10 75520604 75520604 C T SEC24C Silent p.S328S 0.44 TCGA-IN-A6RN-01 10 75608870 75608870 C T CAMK2G Missense_Mutation p.E140K 0.17 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-IN-A6RN-01 10 860754 860754 G C LARP4B Missense_Mutation p.H619Q 0.17 tolerated(0.64) benign(0) TCGA-IN-A6RN-01 10 89711882 89711882 C G PTEN Missense_Mutation p.T167S 0.16 deleterious(0.01) possibly_damaging(0.855) TCGA-IN-A6RN-01 11 1016179 1016179 T A MUC6 Missense_Mutation p.I2208F 0.35 benign(0.003) TCGA-IN-A6RN-01 11 125780346 125780346 G C DDX25 Missense_Mutation p.V199L 0.29 tolerated(0.81) benign(0.094) TCGA-IN-A6RN-01 11 17170212 17170212 A C PIK3C2A Splice_Site p.X483_splice 0.30 TCGA-IN-A6RN-01 11 47202174 47202174 C G PACSIN3 Silent p.A93A 0.28 TCGA-IN-A6RN-01 11 5510460 5510460 G A OR52D1 Missense_Mutation p.R175H 0.06 tolerated(0.48) benign(0.007) TCGA-IN-A6RN-01 11 5536212 5536212 C A UBQLNL 3'UTR 0.11 TCGA-IN-A6RN-01 11 5537060 5537060 C G UBQLNL Missense_Mutation p.L204F 0.11 deleterious(0) possibly_damaging(0.503) TCGA-IN-A6RN-01 11 55540935 55540935 C A OR5D13 Missense_Mutation p.Q8K 0.20 tolerated(0.31) benign(0.022) TCGA-IN-A6RN-01 11 5603050 5603050 G A OR52B6 Missense_Mutation p.R315K 0.12 tolerated(1) probably_damaging(0.97) TCGA-IN-A6RN-01 11 56143410 56143410 T G OR8U1 Missense_Mutation p.F104C 0.34 deleterious(0) probably_damaging(0.999) TCGA-IN-A6RN-01 11 61976181 61976182 AC - SCGB2A1 5'UTR 0.32 TCGA-IN-A6RN-01 11 72554209 72554209 G A FCHSD2 Silent p.N564N 0.20 TCGA-IN-A6RN-01 11 89531652 89531652 A T TRIM49 Silent p.T335T 0.31 TCGA-IN-A6RN-01 12 109017037 109017037 G A SELPLG Silent p.G365G 0.29 TCGA-IN-A6RN-01 12 31244682 31244682 G T DDX11 Silent p.L373L 0.05 TCGA-IN-A6RN-01 12 32458846 32458846 C T BICD1 Silent p.I265I 0.08 TCGA-IN-A6RN-01 12 41967633 41967633 G T PDZRN4 Missense_Mutation p.A1018S 0.10 tolerated(0.35) possibly_damaging(0.725) TCGA-IN-A6RN-01 12 49427330 49427330 G A KMT2D Nonsense_Mutation p.Q3720* 0.15 TCGA-IN-A6RN-01 12 5541434 5541434 G C NTF3 5'UTR 0.07 TCGA-IN-A6RN-01 12 72416245 72416245 G T TPH2 Nonsense_Mutation p.G379* 0.20 TCGA-IN-A6RN-01 12 9302161 9302161 G C PZP Missense_Mutation p.S1474R 0.37 deleterious(0) benign(0.393) TCGA-IN-A6RN-01 13 23906217 23906217 C G SACS Missense_Mutation p.R3933T 0.23 probably_damaging(0.977) TCGA-IN-A6RN-01 13 38357279 38357279 A G TRPC4 Silent p.N64N 0.24 TCGA-IN-A6RN-01 13 67801360 67801360 T G PCDH9 Silent p.R405R 0.28 TCGA-IN-A6RN-01 15 52689432 52689432 G T MYO5A Missense_Mutation p.Q429K 0.33 deleterious(0.05) probably_damaging(0.973) TCGA-IN-A6RN-01 15 65790304 65790304 A T DPP8 Missense_Mutation p.C221S 0.22 tolerated(0.12) probably_damaging(0.997) TCGA-IN-A6RN-01 15 74919738 74919738 A G CLK3 Missense_Mutation p.N436S 0.03 deleterious(0) probably_damaging(1) TCGA-IN-A6RN-01 15 83395038 83395038 A T AC105339.2 3'Flank 0.47 TCGA-IN-A6RN-01 16 1292145 1292145 G C TPSAB1 Missense_Mutation p.W244C 0.16 deleterious(0.03) possibly_damaging(0.857) TCGA-IN-A6RN-01 16 21624099 21624099 A G METTL9 Missense_Mutation p.Y100C 0.30 deleterious(0.01) probably_damaging(0.921) TCGA-IN-A6RN-01 16 2282899 2282899 C T E4F1 Silent p.D291D 0.29 TCGA-IN-A6RN-01 16 51174367 51174367 C T SALL1 Missense_Mutation p.G589D 0.41 tolerated(0.24) benign(0.002) TCGA-IN-A6RN-01 16 74384612 74384612 G C RP11-252A24.2 RNA 0.50 TCGA-IN-A6RN-01 16 76481974 76481974 A G CNTNAP4 Missense_Mutation p.S177G 0.33 tolerated(0.09) benign(0.013) TCGA-IN-A6RN-01 16 83065695 83065695 G A CDH13 Missense_Mutation p.G127S 0.35 tolerated(0.7) benign(0.005) TCGA-IN-A6RN-01 17 10367836 10367836 C A MYH4 Missense_Mutation p.V201F 0.27 deleterious(0) possibly_damaging(0.723) TCGA-IN-A6RN-01 17 18051478 18051478 G A MYO15A Silent p.A2215A 0.49 TCGA-IN-A6RN-01 17 27237293 27237293 C T PHF12 Silent p.P770P 0.28 TCGA-IN-A6RN-01 17 34077114 34077114 G A GAS2L2 Silent p.F203F 0.27 TCGA-IN-A6RN-01 17 43924067 43924067 G A SPPL2C Missense_Mutation p.D599N 0.28 deleterious_low_confidence(0) possibly_damaging(0.783) TCGA-IN-A6RN-01 17 55962641 55962641 G A CUEDC1 Silent p.S95S 0.25 TCGA-IN-A6RN-01 17 59489996 59489996 G T C17orf82 Silent p.G220G 0.31 TCGA-IN-A6RN-01 17 61833661 61833661 G A CCDC47 Missense_Mutation p.P296L 0.33 deleterious(0) probably_damaging(0.993) TCGA-IN-A6RN-01 17 6946019 6946019 C T SLC16A11 Missense_Mutation p.R161H 0.60 deleterious(0.03) benign(0.041) TCGA-IN-A6RN-01 17 79813048 79813048 G C P4HB Silent p.L198L 0.26 TCGA-IN-A6RN-01 17 80320393 80320393 G A TEX19 Missense_Mutation p.E123K 0.21 deleterious(0) possibly_damaging(0.802) TCGA-IN-A6RN-01 17 80399097 80399097 G A HEXDC Missense_Mutation p.A403T 0.24 deleterious_low_confidence(0.01) benign(0.096) TCGA-IN-A6RN-01 18 29055855 29055855 G A DSG3 Missense_Mutation p.G878S 0.07 tolerated(0.22) benign(0.009) TCGA-IN-A6RN-01 18 346722 346722 G A COLEC12 Silent p.I300I 0.49 TCGA-IN-A6RN-01 19 10624657 10624657 G A S1PR5 Missense_Mutation p.A344V 0.38 tolerated(0.11) benign(0.002) TCGA-IN-A6RN-01 19 18499410 18499410 C G GDF15 Missense_Mutation p.R198G 0.24 tolerated(0.3) benign(0.012) TCGA-IN-A6RN-01 19 4954800 4954800 G A UHRF1 RNA 0.25 TCGA-IN-A6RN-01 19 53432662 53432662 A T ZNF321P Missense_Mutation p.S66T 0.25 deleterious(0.04) probably_damaging(0.918) TCGA-IN-A6RN-01 19 58005073 58005073 G T ZNF419 Missense_Mutation p.C384F 0.17 deleterious(0.01) benign(0.024) TCGA-IN-A6RN-01 19 58420923 58420923 C G ZNF417 Silent p.V241V 0.23 TCGA-IN-A6RN-01 19 58805586 58805586 G C ZNF8 Missense_Mutation p.G138R 0.08 tolerated(0.22) benign(0.004) TCGA-IN-A6RN-01 19 9046510 9046510 A C MUC16 Missense_Mutation p.S11707R 0.06 benign(0.387) TCGA-IN-A6RN-01 1 145303942 145303942 G A NBPF10 Missense_Mutation p.V447I 0.18 benign(0.068) TCGA-IN-A6RN-01 1 156641841 156641841 A T NES Silent p.S713S 0.33 TCGA-IN-A6RN-01 1 160328098 160328098 A C NCSTN 3'UTR 0.23 TCGA-IN-A6RN-01 1 161199442 161199442 G A TOMM40L 3'UTR 0.07 TCGA-IN-A6RN-01 1 181003196 181003196 A G MR1 Missense_Mutation p.K18R 0.06 tolerated(0.37) benign(0.086) TCGA-IN-A6RN-01 1 183085791 183085791 G A LAMC1 Missense_Mutation p.E470K 0.07 deleterious(0) probably_damaging(0.963) TCGA-IN-A6RN-01 1 209955414 209955414 G A TRAF3IP3 Missense_Mutation p.R526Q 0.13 tolerated(0.61) benign(0.002) TCGA-IN-A6RN-01 1 209961959 209961959 C T IRF6 Missense_Mutation p.E404K 0.38 deleterious(0.01) probably_damaging(0.992) TCGA-IN-A6RN-01 1 217824481 217824481 A G SPATA17 Silent p.R67R 0.15 TCGA-IN-A6RN-01 1 222717244 222717244 G A HHIPL2 Silent p.G203G 0.32 TCGA-IN-A6RN-01 1 23724340 23724340 C T TCEA3 Silent p.G184G 0.28 TCGA-IN-A6RN-01 1 247201663 247201663 C T ZNF670 Silent p.Q86Q 0.35 TCGA-IN-A6RN-01 1 248202070 248202070 T G OR2L2 Nonsense_Mutation p.Y167* 0.04 TCGA-IN-A6RN-01 1 27189675 27189675 C T SFN 5'UTR 0.21 TCGA-IN-A6RN-01 1 28146221 28146222 - A STX12 Frame_Shift_Ins p.Q238Tfs*37 0.25 TCGA-IN-A6RN-01 1 2938150 2938150 G A ACTRT2 5'UTR 0.24 TCGA-IN-A6RN-01 1 33585615 33585615 C T ADC Intron 0.26 TCGA-IN-A6RN-01 1 40092770 40092770 C A HEYL Silent p.L132L 0.22 TCGA-IN-A6RN-01 1 42050238 42050238 C A HIVEP3 Missense_Mutation p.Q77H 0.40 benign(0.004) TCGA-IN-A6RN-01 1 55075100 55075100 G T FAM151A Silent p.P533P 0.29 TCGA-IN-A6RN-01 1 84386949 84386949 T G TTLL7 Missense_Mutation p.E424A 0.15 deleterious(0.03) possibly_damaging(0.493) TCGA-IN-A6RN-01 1 89486355 89486355 G C GBP3 Missense_Mutation p.T17S 0.26 tolerated(0.69) benign(0.001) TCGA-IN-A6RN-01 20 25456684 25456684 G A NINL Silent p.N1081N 0.06 TCGA-IN-A6RN-01 20 40050378 40050378 A G CHD6 Missense_Mutation p.Y1633H 0.14 tolerated(0.14) benign(0.02) TCGA-IN-A6RN-01 20 42143771 42143771 G A L3MBTL1 Missense_Mutation p.D187N 0.08 tolerated(0.1) benign(0.015) TCGA-IN-A6RN-01 20 43803562 43803562 C G PI3 5'UTR 0.15 TCGA-IN-A6RN-01 20 55108405 55108405 C T FAM209B Missense_Mutation p.T3M 0.26 tolerated(0.26) benign(0.035) TCGA-IN-A6RN-01 20 61460839 61460839 G A COL9A3 Silent p.E347E 0.18 TCGA-IN-A6RN-01 21 11039140 11039140 A C BAGE2 RNA 0.04 TCGA-IN-A6RN-01 22 19127524 19127524 C G DGCR14 Missense_Mutation p.E138D 0.37 tolerated(0.46) benign(0.016) TCGA-IN-A6RN-01 22 42290837 42290837 G A SREBF2 Silent p.A797A 0.04 TCGA-IN-A6RN-01 22 50553554 50553554 T A MOV10L1 Missense_Mutation p.C380S 0.45 tolerated(0.35) benign(0.001) TCGA-IN-A6RN-01 2 132914618 132914618 A C ANKRD30BL Silent p.A145A 0.21 TCGA-IN-A6RN-01 2 171806765 171806765 G A GORASP2 Missense_Mutation p.D134N 0.19 deleterious(0.01) probably_damaging(1) TCGA-IN-A6RN-01 2 236659111 236659111 G A AGAP1 Missense_Mutation p.V218M 0.26 deleterious(0) possibly_damaging(0.681) TCGA-IN-A6RN-01 2 242155593 242155593 T A ANO7 Missense_Mutation p.W692R 0.21 deleterious(0) probably_damaging(0.996) TCGA-IN-A6RN-01 2 242757486 242757486 G A NEU4 Silent p.K202K 0.12 TCGA-IN-A6RN-01 2 37509738 37509738 C T PRKD3 Missense_Mutation p.R312H 0.08 deleterious(0) probably_damaging(0.998) TCGA-IN-A6RN-01 2 51254965 51254965 C T NRXN1 Silent p.V149V 0.31 TCGA-IN-A6RN-01 2 63182694 63182694 A G EHBP1 Missense_Mutation p.R822G 0.26 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-IN-A6RN-01 2 69565670 69565670 C G GFPT1 Missense_Mutation p.E411Q 0.09 deleterious(0.02) possibly_damaging(0.569) TCGA-IN-A6RN-01 3 136096564 136096564 T C STAG1 Missense_Mutation p.K770E 0.27 tolerated(0.82) benign(0.101) TCGA-IN-A6RN-01 3 182583255 182583255 G A ATP11B Silent p.V404V 0.42 TCGA-IN-A6RN-01 3 57632109 57632109 C A DENND6A Missense_Mutation p.G292V 0.08 deleterious(0) probably_damaging(1) TCGA-IN-A6RN-01 3 58139200 58139200 C T FLNB Missense_Mutation p.R2187W 0.26 deleterious(0) probably_damaging(0.984) TCGA-IN-A6RN-01 3 9798575 9798575 C G OGG1 Intron 0.32 TCGA-IN-A6RN-01 4 164534501 164534501 C G MARCH1 Missense_Mutation p.R69S 0.33 tolerated(0.46) benign(0.032) TCGA-IN-A6RN-01 4 20525447 20525447 A C SLIT2 Missense_Mutation p.N399H 0.23 deleterious(0.02) benign(0.319) TCGA-IN-A6RN-01 4 20525485 20525485 C T SLIT2 Silent p.I411I 0.27 TCGA-IN-A6RN-01 4 73154516 73154516 C T ADAMTS3 Missense_Mutation p.G1001S 0.10 tolerated(0.06) possibly_damaging(0.734) TCGA-IN-A6RN-01 4 74364921 74364921 T C AFM Silent p.T460T 0.06 TCGA-IN-A6RN-01 5 118485816 118485816 T A DMXL1 Missense_Mutation p.L1432I 0.42 tolerated(0.21) benign(0.043) TCGA-IN-A6RN-01 5 23521169 23521169 T A PRDM9 Nonsense_Mutation p.L130* 0.31 TCGA-IN-A6RN-01 5 42718570 42718570 G A GHR Missense_Mutation p.E321K 0.07 deleterious(0) probably_damaging(0.998) TCGA-IN-A6RN-01 5 56777908 56777908 A G ACTBL2 Silent p.I209I 0.23 TCGA-IN-A6RN-01 5 59940671 59940671 C A DEPDC1B Nonsense_Mutation p.E204* 0.25 TCGA-IN-A6RN-01 5 94852652 94852652 C T TTC37 Missense_Mutation p.D802N 0.38 tolerated(0.17) benign(0.015) TCGA-IN-A6RN-01 6 112392631 112392631 A G TUBE1 Missense_Mutation p.L471P 0.33 deleterious(0) probably_damaging(0.982) TCGA-IN-A6RN-01 6 131917212 131917212 C A MED23 Missense_Mutation p.G957V 0.13 deleterious(0.01) probably_damaging(1) TCGA-IN-A6RN-01 6 145075901 145075901 G C UTRN Missense_Mutation p.D2801H 0.17 deleterious(0) probably_damaging(0.999) TCGA-IN-A6RN-01 6 31604290 31604290 C T PRRC2A Missense_Mutation p.R1947C 0.15 unknown(0) TCGA-IN-A6RN-01 6 31700045 31700045 G C CLIC1 Missense_Mutation p.N171K 0.26 deleterious(0) benign(0.232) TCGA-IN-A6RN-01 6 31864396 31864396 G A EHMT2 Silent p.G105G 0.21 TCGA-IN-A6RN-01 6 51889383 51889383 G A PKHD1 Missense_Mutation p.T1742M 0.22 tolerated(0.14) possibly_damaging(0.836) TCGA-IN-A6RN-01 6 90494814 90494814 G A MDN1 Missense_Mutation p.P456S 0.12 benign(0.063) TCGA-IN-A6RN-01 7 48314178 48314178 T A ABCA13 Missense_Mutation p.F1639I 0.21 benign(0.126) TCGA-IN-A6RN-01 7 48314183 48314183 C A ABCA13 Missense_Mutation p.N1640K 0.22 benign(0.305) TCGA-IN-A6RN-01 7 5353157 5353157 C A TNRC18 Silent p.G2455G 0.35 TCGA-IN-A6RN-01 7 64863782 64863782 C T ZNF92 Missense_Mutation p.T252I 0.21 deleterious(0.01) probably_damaging(0.96) TCGA-IN-A6RN-01 7 99621085 99621085 G C ZKSCAN1 5'UTR 0.17 TCGA-IN-A6RN-01 8 10465195 10465195 T C RP1L1 Missense_Mutation p.E2138G 0.28 unknown(0) TCGA-IN-A6RN-01 8 134488026 134488026 G T ST3GAL1 Missense_Mutation p.T81N 0.32 possibly_damaging(0.745) TCGA-IN-A6RN-01 8 144940516 144940516 C T EPPK1 Silent p.S2302S 0.03 TCGA-IN-A6RN-01 8 17102642 17102642 T C CNOT7 Missense_Mutation p.D7G 0.23 tolerated(0.13) benign(0.002) TCGA-IN-A6RN-01 8 27288550 27288550 T G PTK2B Intron 0.20 TCGA-IN-A6RN-01 8 3611558 3611558 A T CSMD1 Silent p.T275T 0.20 TCGA-IN-A6RN-01 8 52284605 52284605 T G PXDNL Silent p.A1243A 0.35 TCGA-IN-A6RN-01 9 113168658 113168658 G C SVEP1 Missense_Mutation p.F3074L 0.24 benign(0.019) TCGA-IN-A6RN-01 9 131186792 131186792 G A CERCAM Missense_Mutation p.R222Q 0.28 tolerated(0.05) benign(0.02) TCGA-IN-A6RN-01 9 131847002 131847002 C A DOLPP1 Silent p.I44I 0.23 TCGA-IN-A6RN-01 9 21077518 21077518 G A IFNB1 Silent p.N117N 0.31 TCGA-IN-A6RN-01 9 43627261 43627261 G T SPATA31A6 Missense_Mutation p.Q476K 0.20 deleterious(0.01) possibly_damaging(0.641) TCGA-IN-A6RN-01 X 11135397 11135397 C A HCCS Missense_Mutation p.P88Q 0.24 deleterious(0) probably_damaging(0.931) TCGA-IN-A6RN-01 X 117796708 117796708 G T DOCK11 Nonsense_Mutation p.G1677* 0.18 TCGA-IN-A6RN-01 X 119064118 119064118 C A NKAP Missense_Mutation p.A312S 0.27 deleterious(0) unknown(0) TCGA-IN-A6RN-01 X 133988303 133988303 G C FAM122C 3'UTR 0.42 TCGA-IN-A6RN-01 X 137715060 137715060 G C FGF13 Missense_Mutation p.S240C 0.03 deleterious_low_confidence(0) probably_damaging(0.94) TCGA-IN-A6RN-01 X 140996082 140996082 C T MAGEC1 Silent p.S964S 0.05 TCGA-IN-A6RN-01 X 140996084 140996084 T A MAGEC1 Missense_Mutation p.L965Q 0.04 deleterious(0) unknown(0) TCGA-IN-A6RN-01 X 154467130 154467130 C G VBP1 3'UTR 0.23 TCGA-IN-A6RN-01 X 77245413 77245413 G A ATP7A Missense_Mutation p.R432K 0.06 tolerated(0.14) benign(0.032) TCGA-IN-A6RN-01 X 86087179 86087179 A G DACH2 3'UTR 0.41 TCGA-IN-A6RN-01 X 88008812 88008812 C T CPXCR1 Nonsense_Mutation p.R133* 0.11 TCGA-IN-A6RO-01 10 100182182 100182182 G C HPS1 Missense_Mutation p.Q563E 0.23 tolerated(1) benign(0) TCGA-IN-A6RO-01 10 135076647 135076647 C T ADAM8 3'UTR 0.36 TCGA-IN-A6RO-01 10 13541841 13541841 C T BEND7 Missense_Mutation p.G77R 0.57 deleterious_low_confidence(0) probably_damaging(1) TCGA-IN-A6RO-01 10 13705453 13705453 C T FRMD4A Missense_Mutation p.E554K 0.23 tolerated(0.21) benign(0.024) TCGA-IN-A6RO-01 10 17362929 17362929 A T ST8SIA6 Missense_Mutation p.L382H 0.50 deleterious(0) probably_damaging(0.999) TCGA-IN-A6RO-01 10 18828697 18828697 G C CACNB2 3'UTR 0.25 TCGA-IN-A6RO-01 10 21108363 21108363 T A NEBL Missense_Mutation p.Q682L 0.37 tolerated(0.11) benign(0.375) TCGA-IN-A6RO-01 10 23321871 23321871 G C ARMC3 Silent p.L776L 0.44 TCGA-IN-A6RO-01 10 30638189 30638189 C G MTPAP Missense_Mutation p.V6L 0.45 tolerated_low_confidence(0.07) benign(0.019) TCGA-IN-A6RO-01 10 55581852 55581852 T G PCDH15 Missense_Mutation p.E1880D 0.39 deleterious_low_confidence(0) unknown(0) TCGA-IN-A6RO-01 10 70507209 70507209 G T CCAR1 Missense_Mutation p.V238F 0.32 deleterious_low_confidence(0.02) probably_damaging(0.954) TCGA-IN-A6RO-01 10 71871328 71871328 C T H2AFY2 Silent p.A336A 0.15 TCGA-IN-A6RO-01 10 73569611 73569611 C T CDH23 Silent p.L679L 0.47 TCGA-IN-A6RO-01 10 78646925 78646925 G T KCNMA1 3'Flank 0.46 TCGA-IN-A6RO-01 10 85981827 85981827 A C LRIT2 Missense_Mutation p.L501R 0.23 tolerated(0.53) benign(0) TCGA-IN-A6RO-01 10 95422388 95422388 T G PDE6C Silent p.T785T 0.40 TCGA-IN-A6RO-01 11 114392868 114392868 C A NXPE1 Missense_Mutation p.R347M 0.78 tolerated(0.32) benign(0.144) TCGA-IN-A6RO-01 11 121028610 121028610 G A TECTA Missense_Mutation p.V1456M 0.88 tolerated(0.11) benign(0.005) TCGA-IN-A6RO-01 11 125472244 125472244 T C STT3A Missense_Mutation p.Y66H 0.32 deleterious(0.01) probably_damaging(0.987) TCGA-IN-A6RO-01 11 1256378 1256378 C T MUC5B Silent p.Y898Y 0.13 TCGA-IN-A6RO-01 11 2924580 2924580 A T SLC22A18 Missense_Mutation p.Q2L 0.21 tolerated_low_confidence(0.34) benign(0.002) TCGA-IN-A6RO-01 11 4095836 4095836 G T STIM1 Missense_Mutation p.R299L 0.29 deleterious(0.02) possibly_damaging(0.621) TCGA-IN-A6RO-01 11 43333575 43333575 G A API5 5'UTR 0.33 TCGA-IN-A6RO-01 11 55111371 55111371 A G OR4A16 Missense_Mutation p.H232R 0.12 tolerated_low_confidence(1) benign(0.002) TCGA-IN-A6RO-01 11 55339863 55339863 A C OR4C16 Missense_Mutation p.K87T 0.39 deleterious(0.03) benign(0.003) TCGA-IN-A6RO-01 11 5536703 5536703 G T UBQLNL Silent p.L323L 0.47 TCGA-IN-A6RO-01 11 65361273 65361273 G A KCNK7 Missense_Mutation p.P131L 0.24 deleterious(0) probably_damaging(1) TCGA-IN-A6RO-01 11 68131241 68131241 C T LRP5 Missense_Mutation p.T238M 0.42 tolerated(0.06) benign(0.104) TCGA-IN-A6RO-01 11 6891832 6891832 G A OR10A2 Missense_Mutation p.E283K 0.50 deleterious(0.02) benign(0.051) TCGA-IN-A6RO-01 11 7110655 7110655 C T RBMXL2 Missense_Mutation p.R102C 0.25 tolerated(0.05) possibly_damaging(0.722) TCGA-IN-A6RO-01 11 86662203 86662203 C - FZD4 Frame_Shift_Del p.G532Afs*46 0.20 TCGA-IN-A6RO-01 11 92568067 92568067 T A FAT3 Nonsense_Mutation p.Y3301* 0.46 TCGA-IN-A6RO-01 11 9749681 9749681 T C SWAP70 Missense_Mutation p.Y242H 0.23 deleterious(0) probably_damaging(1) TCGA-IN-A6RO-01 12 10010172 10010172 G C CLEC2B Missense_Mutation p.C46W 0.33 deleterious(0) probably_damaging(0.999) TCGA-IN-A6RO-01 12 108685574 108685574 G T CMKLR1 3'UTR 0.47 TCGA-IN-A6RO-01 12 112926316 112926316 T A PTPN11 Splice_Site p.X483_splice 0.43 TCGA-IN-A6RO-01 12 120118183 120118183 C T PRKAB1 3'UTR 0.29 TCGA-IN-A6RO-01 12 120565739 120565739 G A GCN1L1 Silent p.L2644L 0.16 TCGA-IN-A6RO-01 12 120992606 120992606 C A RNF10 Missense_Mutation p.Q214K 0.26 deleterious(0.01) probably_damaging(0.991) TCGA-IN-A6RO-01 12 123463020 123463020 C A OGFOD2 Missense_Mutation p.F85L 0.53 deleterious(0.02) benign(0.309) TCGA-IN-A6RO-01 12 123703001 123703001 T C MPHOSPH9 Silent p.P154P 0.50 TCGA-IN-A6RO-01 12 124416017 124416017 C G DNAH10 Missense_Mutation p.T4187R 0.16 probably_damaging(0.962) TCGA-IN-A6RO-01 12 126138241 126138241 T G TMEM132B Missense_Mutation p.L741R 0.52 tolerated(0.81) possibly_damaging(0.805) TCGA-IN-A6RO-01 12 133324470 133324470 T G ANKLE2 Missense_Mutation p.Q393P 0.03 deleterious(0.01) possibly_damaging(0.828) TCGA-IN-A6RO-01 12 20968679 20968679 C A LST3 Missense_Mutation p.Q3K 0.32 tolerated(0.26) benign(0.017) TCGA-IN-A6RO-01 12 21459818 21459818 G A SLCO1A2 Missense_Mutation p.S147L 0.33 deleterious(0.01) benign(0.291) TCGA-IN-A6RO-01 12 40672031 40672031 C G LRRK2 Missense_Mutation p.Q737E 0.50 tolerated(0.31) benign(0.017) TCGA-IN-A6RO-01 12 42854155 42854155 G A PRICKLE1 Missense_Mutation p.P651L 0.12 deleterious(0) probably_damaging(1) TCGA-IN-A6RO-01 12 46345486 46345486 G A SCAF11 Missense_Mutation p.R82C 0.35 deleterious(0) probably_damaging(0.999) TCGA-IN-A6RO-01 12 50026400 50026400 G A PRPF40B Missense_Mutation p.A106T 0.66 tolerated(0.52) unknown(0) TCGA-IN-A6RO-01 12 56119283 56119283 T C CD63 3'UTR 0.61 TCGA-IN-A6RO-01 12 56629423 56629423 T A SLC39A5 Missense_Mutation p.L295H 0.65 deleterious(0) probably_damaging(0.984) TCGA-IN-A6RO-01 12 56862392 56862392 C A SPRYD4 Missense_Mutation p.A6E 0.56 tolerated_low_confidence(0.12) benign(0.046) TCGA-IN-A6RO-01 12 57422520 57422520 T G MYO1A 3'UTR 0.08 TCGA-IN-A6RO-01 12 57850718 57850718 G T INHBE 3'UTR 0.66 TCGA-IN-A6RO-01 12 67663419 67663419 C A CAND1 5'UTR 0.68 TCGA-IN-A6RO-01 12 7882110 7882110 T G CLEC4C 3'UTR 0.56 TCGA-IN-A6RO-01 12 88379766 88379766 C T C12orf50 Silent p.A329A 0.47 TCGA-IN-A6RO-01 13 25000656 25000656 C G PARP4 Missense_Mutation p.E1643Q 0.42 tolerated(0.11) benign(0.014) TCGA-IN-A6RO-01 13 32731485 32731485 G A FRY Missense_Mutation p.R576K 0.13 tolerated(0.09) possibly_damaging(0.836) TCGA-IN-A6RO-01 13 32914295 32914295 A G BRCA2 Missense_Mutation p.N1935D 0.07 deleterious(0.02) benign(0.185) TCGA-IN-A6RO-01 13 33226081 33226081 C G PDS5B Missense_Mutation p.C83W 0.06 deleterious(0) probably_damaging(1) TCGA-IN-A6RO-01 13 33628144 33628144 G A KL Missense_Mutation p.E354K 0.04 tolerated(0.08) benign(0.091) TCGA-IN-A6RO-01 13 36241642 36241642 C T NBEA Nonsense_Mutation p.R2845* 0.13 TCGA-IN-A6RO-01 13 36686256 36686256 G C DCLK1 Missense_Mutation p.S158W 0.06 deleterious(0.01) unknown(0) TCGA-IN-A6RO-01 13 38320579 38320579 A T TRPC4 Missense_Mutation p.L131H 0.20 tolerated(0.07) probably_damaging(0.976) TCGA-IN-A6RO-01 13 48942706 48942706 G C RB1 Missense_Mutation p.E365Q 0.76 tolerated(0.22) possibly_damaging(0.503) TCGA-IN-A6RO-01 13 58207849 58207849 G T PCDH17 Missense_Mutation p.R390L 0.80 deleterious(0.01) probably_damaging(0.971) TCGA-IN-A6RO-01 13 73636262 73636262 G A KLF5 Silent p.T175T 0.42 TCGA-IN-A6RO-01 13 88328417 88328417 G C SLITRK5 Silent p.L258L 0.13 TCGA-IN-A6RO-01 13 96743092 96743092 C T HS6ST3 5'Flank 0.71 TCGA-IN-A6RO-01 14 104643572 104643572 G A KIF26A Missense_Mutation p.G1483S 0.38 tolerated(1) benign(0) TCGA-IN-A6RO-01 14 106091286 106091286 A G IGHG4 Missense_Mutation p.V203A 0.27 deleterious(0) probably_damaging(0.977) TCGA-IN-A6RO-01 14 106452749 106452749 C G IGHV1-2 Missense_Mutation p.R91S 0.45 tolerated(0.45) benign(0.048) TCGA-IN-A6RO-01 14 23239055 23239055 G - OXA1L Frame_Shift_Del p.A226Qfs*23 0.28 TCGA-IN-A6RO-01 14 24662101 24662101 G A TM9SF1 Silent p.I240I 0.16 TCGA-IN-A6RO-01 14 31582500 31582500 G C HECTD1 Nonsense_Mutation p.S2016* 0.44 TCGA-IN-A6RO-01 14 39512065 39512067 AAG - SEC23A In_Frame_Del p.L637del 0.41 TCGA-IN-A6RO-01 14 64518713 64518713 G C SYNE2 Missense_Mutation p.W2694C 0.54 probably_damaging(1) TCGA-IN-A6RO-01 14 65198429 65198429 T C PLEKHG3 Intron 0.49 TCGA-IN-A6RO-01 14 70235366 70235366 G C SRSF5 Missense_Mutation p.D58H 0.38 tolerated(0.11) benign(0.387) TCGA-IN-A6RO-01 14 70263537 70263537 C T SLC10A1 Missense_Mutation p.M112I 0.47 tolerated(0.25) benign(0.004) TCGA-IN-A6RO-01 14 73959794 73959794 A G HEATR4 Silent p.V940V 0.40 TCGA-IN-A6RO-01 14 96178134 96178134 G A TCL1A Silent p.D101D 0.39 TCGA-IN-A6RO-01 15 25972349 25972349 G A ATP10A Missense_Mutation p.L269F 0.57 deleterious(0) possibly_damaging(0.477) TCGA-IN-A6RO-01 15 29346097 29346097 C T APBA2 Missense_Mutation p.R4W 0.35 deleterious_low_confidence(0) possibly_damaging(0.726) TCGA-IN-A6RO-01 15 35045224 35045224 C A GJD2 Nonsense_Mutation p.E141* 0.07 TCGA-IN-A6RO-01 15 35149250 35149250 C T AQR Missense_Mutation p.E1401K 0.82 tolerated(0.18) benign(0.162) TCGA-IN-A6RO-01 15 42041423 42041423 C A MGA Missense_Mutation p.S1873Y 0.45 deleterious(0.02) possibly_damaging(0.836) TCGA-IN-A6RO-01 15 43552729 43552729 C T TGM5 Missense_Mutation p.R20Q 0.30 tolerated(0.56) benign(0.005) TCGA-IN-A6RO-01 15 51507970 51507970 C A CYP19A1 Missense_Mutation p.R263I 0.12 deleterious(0) probably_damaging(0.974) TCGA-IN-A6RO-01 15 56535343 56535343 G C RFX7 Missense_Mutation p.H47Q 0.27 tolerated(0.4) benign(0.009) TCGA-IN-A6RO-01 15 57744397 57744397 G A CGNL1 Missense_Mutation p.R655Q 0.21 tolerated(1) benign(0.001) TCGA-IN-A6RO-01 15 64673156 64673156 C A KIAA0101 Splice_Site p.X43_splice 0.10 TCGA-IN-A6RO-01 15 65621124 65621124 G T IGDCC3 3'UTR 0.34 TCGA-IN-A6RO-01 15 72543566 72543566 G C PARP6 Silent p.V430V 0.12 TCGA-IN-A6RO-01 15 77473936 77473936 C G PEAK1 Missense_Mutation p.L111F 0.15 tolerated(0.05) possibly_damaging(0.646) TCGA-IN-A6RO-01 15 84582118 84582118 A G ADAMTSL3 Missense_Mutation p.T659A 0.14 deleterious(0.03) possibly_damaging(0.744) TCGA-IN-A6RO-01 15 89392809 89392809 G A ACAN Missense_Mutation p.G625S 0.19 deleterious(0.03) unknown(0) TCGA-IN-A6RO-01 15 89398471 89398471 G A ACAN Silent p.Q885Q 0.14 TCGA-IN-A6RO-01 16 11944204 11944204 A G RSL1D1 Silent p.N59N 0.33 TCGA-IN-A6RO-01 16 22588087 22588087 G A RP11-368J21.3 RNA 0.38 TCGA-IN-A6RO-01 16 30740816 30740816 G A SRCAP Missense_Mutation p.R2017Q 0.30 possibly_damaging(0.786) TCGA-IN-A6RO-01 16 30990652 30990652 C G SETD1A Missense_Mutation p.P1182R 0.36 unknown(0) TCGA-IN-A6RO-01 16 3778853 3778853 G A CREBBP Silent p.S2065S 0.08 TCGA-IN-A6RO-01 16 449734 449734 C T NME4 Silent p.I145I 0.46 TCGA-IN-A6RO-01 16 5046920 5046920 G A SEC14L5 Missense_Mutation p.R282Q 0.74 tolerated(0.05) benign(0.329) TCGA-IN-A6RO-01 16 66945920 66945920 C T CDH16 Missense_Mutation p.V558M 0.42 deleterious(0.04) benign(0.05) TCGA-IN-A6RO-01 16 67232149 67232149 C T E2F4 3'UTR 0.29 TCGA-IN-A6RO-01 16 70986378 70986378 G T HYDIN Missense_Mutation p.S2159R 0.47 probably_damaging(0.975) TCGA-IN-A6RO-01 16 71683148 71683148 C T PHLPP2 Missense_Mutation p.R1206Q 0.47 tolerated_low_confidence(0.55) benign(0.01) TCGA-IN-A6RO-01 16 7382923 7382923 A C RBFOX1 5'UTR 0.38 TCGA-IN-A6RO-01 16 777579 777579 G C HAGHL Missense_Mutation p.E24Q 0.68 tolerated(0.15) benign(0.067) TCGA-IN-A6RO-01 16 89253859 89253859 C A CDH15 Missense_Mutation p.T229N 0.21 deleterious(0.02) possibly_damaging(0.772) TCGA-IN-A6RO-01 17 10535024 10535024 C A MYH3 Missense_Mutation p.K1730N 0.80 deleterious(0.02) probably_damaging(0.995) TCGA-IN-A6RO-01 17 27901714 27901714 G A GIT1 3'UTR 0.19 TCGA-IN-A6RO-01 17 29112950 29112950 G A CRLF3 Silent p.C353C 0.39 TCGA-IN-A6RO-01 17 3144165 3144165 C A OR1D4 RNA 0.28 TCGA-IN-A6RO-01 17 33329025 33329025 G A LIG3 Missense_Mutation p.G859D 0.21 tolerated(0.23) benign(0.003) TCGA-IN-A6RO-01 17 36482866 36482866 G A GPR179 Nonsense_Mutation p.Q2196* 0.04 TCGA-IN-A6RO-01 17 36499575 36499575 C A GPR179 Missense_Mutation p.R33L 0.06 tolerated(0.07) benign(0.037) TCGA-IN-A6RO-01 17 37627800 37627800 C A CDK12 Missense_Mutation p.A572E 0.08 benign(0.033) TCGA-IN-A6RO-01 17 37627808 37627808 C G CDK12 Missense_Mutation p.Q575E 0.08 possibly_damaging(0.585) TCGA-IN-A6RO-01 17 38911429 38911429 G A KRT25 Missense_Mutation p.T32I 0.37 tolerated(0.07) benign(0.004) TCGA-IN-A6RO-01 17 42168794 42168794 C T HDAC5 Missense_Mutation p.G412S 0.16 tolerated(0.74) probably_damaging(0.997) TCGA-IN-A6RO-01 17 5421182 5421182 G C NLRP1 Missense_Mutation p.P1314R 0.85 deleterious(0) probably_damaging(0.997) TCGA-IN-A6RO-01 17 56598633 56598633 G A SEPT4 Missense_Mutation p.P381S 0.43 tolerated(0.05) probably_damaging(1) TCGA-IN-A6RO-01 17 59469529 59469537 TGGAGGAGG - BCAS3 3'UTR 0.24 TCGA-IN-A6RO-01 17 62892245 62892245 C T LRRC37A3 Silent p.P377P 0.26 TCGA-IN-A6RO-01 18 2707876 2707876 G C SMCHD1 Missense_Mutation p.G740R 0.29 deleterious(0.03) probably_damaging(0.953) TCGA-IN-A6RO-01 18 29246225 29246225 C G B4GALT6 Missense_Mutation p.G76R 0.84 tolerated(0.06) possibly_damaging(0.872) TCGA-IN-A6RO-01 18 31538354 31538354 T C NOL4 Missense_Mutation p.D362G 0.80 deleterious(0.02) possibly_damaging(0.51) TCGA-IN-A6RO-01 19 10090546 10090546 C T COL5A3 Missense_Mutation p.R894Q 0.14 unknown(0) TCGA-IN-A6RO-01 19 10477093 10477093 C A TYK2 Missense_Mutation p.S210I 0.68 deleterious(0) possibly_damaging(0.697) TCGA-IN-A6RO-01 19 11303898 11303898 G A KANK2 Silent p.A286A 0.59 TCGA-IN-A6RO-01 19 18966814 18966821 TGCGCCTC - UPF1 Frame_Shift_Del p.L544Qfs*4 0.21 TCGA-IN-A6RO-01 19 19309966 19309966 G A RFXANK Missense_Mutation p.R212Q 0.34 tolerated(0.17) benign(0.309) TCGA-IN-A6RO-01 19 21950251 21950251 C G ZNF100 5'UTR 0.41 TCGA-IN-A6RO-01 19 23837268 23837268 A T ZNF675 Missense_Mutation p.F156Y 0.43 tolerated(0.12) benign(0) TCGA-IN-A6RO-01 19 34957880 34957880 A T UBA2 Missense_Mutation p.N568Y 0.48 deleterious(0) possibly_damaging(0.805) TCGA-IN-A6RO-01 19 35831980 35831980 C T CD22 Silent p.I482I 0.04 TCGA-IN-A6RO-01 19 37966832 37966832 G A ZNF570 Nonsense_Mutation p.W28* 0.07 TCGA-IN-A6RO-01 19 38946111 38946111 C T RYR1 Missense_Mutation p.R533C 0.08 probably_damaging(1) TCGA-IN-A6RO-01 19 40354319 40354319 G A FCGBP Missense_Mutation p.H5384Y 0.55 benign(0.055) TCGA-IN-A6RO-01 19 40541163 40541163 C T ZNF780B Missense_Mutation p.G535R 0.10 tolerated(0.06) probably_damaging(0.992) TCGA-IN-A6RO-01 19 42729007 42729007 C T ZNF526 Missense_Mutation p.S151L 0.12 deleterious(0) probably_damaging(0.998) TCGA-IN-A6RO-01 19 53619674 53619674 C T ZNF415 Missense_Mutation p.D10N 0.19 deleterious(0) possibly_damaging(0.908) TCGA-IN-A6RO-01 19 53740302 53740302 C A ZNF677 Missense_Mutation p.D560Y 0.45 tolerated(0.12) benign(0.36) TCGA-IN-A6RO-01 19 57176313 57176313 G A ZNF835 Missense_Mutation p.A85V 0.31 tolerated(0.47) benign(0.029) TCGA-IN-A6RO-01 19 58187715 58187715 A G ZSCAN4 Missense_Mutation p.I68V 0.27 tolerated(0.32) benign(0.011) TCGA-IN-A6RO-01 19 6415395 6415395 C T KHSRP Silent p.K654K 0.36 TCGA-IN-A6RO-01 19 7975587 7975587 G A MAP2K7 Missense_Mutation p.V192I 0.64 deleterious(0.04) possibly_damaging(0.811) TCGA-IN-A6RO-01 19 9084191 9084191 A C MUC16 Missense_Mutation p.F2542V 0.40 unknown(0) TCGA-IN-A6RO-01 19 9801936 9801936 T G ZNF812 Missense_Mutation p.E81D 0.19 tolerated(0.35) benign(0.43) TCGA-IN-A6RO-01 1 100575937 100575937 C G SASS6 Missense_Mutation p.E258Q 0.20 deleterious(0.04) possibly_damaging(0.835) TCGA-IN-A6RO-01 1 11918445 11918445 G A NPPB Missense_Mutation p.R72C 0.10 deleterious(0.05) benign(0.356) TCGA-IN-A6RO-01 1 120506347 120506347 C T NOTCH2 Missense_Mutation p.D589N 0.57 tolerated(0.5) probably_damaging(0.968) TCGA-IN-A6RO-01 1 120611990 120611990 C A NOTCH2 Missense_Mutation p.A11S 0.09 tolerated(0.74) unknown(0) TCGA-IN-A6RO-01 1 155184370 155184370 G C MTX1 3'Flank 0.31 TCGA-IN-A6RO-01 1 160784515 160784515 G A LY9 Missense_Mutation p.V346I 0.12 tolerated(0.42) benign(0.391) TCGA-IN-A6RO-01 1 186115038 186115038 A T HMCN1 Missense_Mutation p.N4864I 0.44 probably_damaging(0.996) TCGA-IN-A6RO-01 1 19500015 19500015 G C UBR4 Missense_Mutation p.P1028R 0.77 benign(0) TCGA-IN-A6RO-01 1 196694302 196694302 A G CFH Missense_Mutation p.K583R 0.47 tolerated(0.34) benign(0.01) TCGA-IN-A6RO-01 1 203672793 203672793 C T ATP2B4 Silent p.D317D 0.41 TCGA-IN-A6RO-01 1 207870865 207870865 G T CR1L Missense_Mutation p.D294Y 0.40 deleterious(0.01) possibly_damaging(0.56) TCGA-IN-A6RO-01 1 212126028 212126028 T C INTS7 Silent p.G733G 0.45 TCGA-IN-A6RO-01 1 214507595 214507595 G A SMYD2 Missense_Mutation p.G389R 0.18 deleterious(0) probably_damaging(1) TCGA-IN-A6RO-01 1 216363678 216363678 G C USH2A Missense_Mutation p.S1428C 0.56 probably_damaging(0.943) TCGA-IN-A6RO-01 1 220236218 220236218 C T BPNT1 Missense_Mutation p.V185I 0.17 tolerated(0.4) benign(0.031) TCGA-IN-A6RO-01 1 223567977 223567977 G T C1orf65 Missense_Mutation p.R387L 0.14 deleterious(0.02) benign(0.266) TCGA-IN-A6RO-01 1 228336397 228336397 G A GUK1 Silent p.L190L 0.42 TCGA-IN-A6RO-01 1 230838970 230838970 G C AGT Missense_Mutation p.P459A 0.47 deleterious(0.01) probably_damaging(0.994) TCGA-IN-A6RO-01 1 235345769 235345769 C T ARID4B Missense_Mutation p.R822H 0.40 deleterious_low_confidence(0) probably_damaging(0.964) TCGA-IN-A6RO-01 1 241749982 241749982 G T KMO Missense_Mutation p.G320V 0.47 deleterious(0) probably_damaging(1) TCGA-IN-A6RO-01 1 245912810 245912810 C A SMYD3 3'Flank 0.50 TCGA-IN-A6RO-01 1 248085037 248085037 T G OR2T8 Missense_Mutation p.S240A 0.27 deleterious(0.01) possibly_damaging(0.812) TCGA-IN-A6RO-01 1 248636836 248636836 C T OR2T3 Missense_Mutation p.T62I 0.41 deleterious(0.03) probably_damaging(0.933) TCGA-IN-A6RO-01 1 248737874 248737874 G A OR2T34 Missense_Mutation p.T62I 0.27 deleterious(0.02) probably_damaging(0.933) TCGA-IN-A6RO-01 1 28661374 28661374 G T MED18 Missense_Mutation p.V174L 0.12 tolerated(0.83) benign(0.005) TCGA-IN-A6RO-01 1 33990533 33990533 T A CSMD2 Nonsense_Mutation p.K3305* 0.75 TCGA-IN-A6RO-01 1 36767274 36767274 C A THRAP3 Missense_Mutation p.P875T 0.75 deleterious(0) probably_damaging(0.991) TCGA-IN-A6RO-01 1 40536154 40536154 G C CAP1 Missense_Mutation p.E390D 0.43 tolerated(0.1) probably_damaging(0.992) TCGA-IN-A6RO-01 1 40928853 40928853 G C ZFP69B Silent p.A399A 0.15 TCGA-IN-A6RO-01 1 43824780 43824780 G A CDC20 5'UTR 0.12 TCGA-IN-A6RO-01 1 44083409 44083409 G A PTPRF Missense_Mutation p.V1400I 0.59 tolerated(1) benign(0.01) TCGA-IN-A6RO-01 1 44596265 44596265 T A KLF17 Missense_Mutation p.V336E 0.52 deleterious(0.01) possibly_damaging(0.636) TCGA-IN-A6RO-01 1 52962853 52962853 T C ZCCHC11 Silent p.E334E 0.27 TCGA-IN-A6RO-01 1 6642126 6642126 G A ZBTB48 Silent p.V233V 0.16 TCGA-IN-A6RO-01 1 74835200 74835200 G C FPGT-TNNI3K Missense_Mutation p.S647T 0.05 deleterious(0.03) probably_damaging(0.994) TCGA-IN-A6RO-01 1 77334182 77334182 C T ST6GALNAC5 Missense_Mutation p.R6C 0.48 benign(0.004) TCGA-IN-A6RO-01 1 9781570 9781570 G T PIK3CD Missense_Mutation p.C627F 0.16 deleterious(0) possibly_damaging(0.904) TCGA-IN-A6RO-01 20 17462414 17462414 G A PCSK2 Missense_Mutation p.R539H 0.32 deleterious(0) probably_damaging(1) TCGA-IN-A6RO-01 20 19634756 19634756 G A SLC24A3 Silent p.T221T 0.12 TCGA-IN-A6RO-01 20 20177401 20177401 C A C20orf26 Missense_Mutation p.P593Q 0.16 deleterious(0.01) possibly_damaging(0.48) TCGA-IN-A6RO-01 20 23065878 23065878 C T CD93 Missense_Mutation p.V318I 0.18 tolerated(0.56) benign(0.001) TCGA-IN-A6RO-01 20 35262936 35262936 C T SLA2 Missense_Mutation p.E50K 0.42 tolerated(0.11) benign(0.028) TCGA-IN-A6RO-01 20 37536565 37536565 G A PPP1R16B Missense_Mutation p.A339T 0.42 tolerated(0.46) benign(0.037) TCGA-IN-A6RO-01 20 40790170 40790170 C T PTPRT Missense_Mutation p.R835H 0.17 tolerated(0.57) benign(0) TCGA-IN-A6RO-01 20 50049200 50049200 G A NFATC2 Missense_Mutation p.P709L 0.42 tolerated(0.11) benign(0.027) TCGA-IN-A6RO-01 20 5283178 5283178 C G PROKR2 Missense_Mutation p.K221N 0.06 deleterious(0) possibly_damaging(0.831) TCGA-IN-A6RO-01 20 57428722 57428722 C T GNAS Silent p.F134F 0.49 TCGA-IN-A6RO-01 20 60585200 60585200 C T TAF4 Missense_Mutation p.A555T 0.40 benign(0.004) TCGA-IN-A6RO-01 20 62173618 62173618 G A SRMS Missense_Mutation p.H282Y 0.46 deleterious(0) probably_damaging(0.978) TCGA-IN-A6RO-01 21 32598200 32598200 C T TIAM1 Missense_Mutation p.A551T 0.26 deleterious(0) probably_damaging(0.94) TCGA-IN-A6RO-01 21 34876399 34876399 C A GART 3'UTR 0.23 TCGA-IN-A6RO-01 21 47703750 47703750 A G MCM3AP Missense_Mutation p.S408P 0.24 tolerated(0.06) possibly_damaging(0.47) TCGA-IN-A6RO-01 22 17662907 17662907 C T CECR1 Silent p.L415L 0.36 TCGA-IN-A6RO-01 22 19966559 19966559 T C ARVCF Missense_Mutation p.I481V 0.54 tolerated(0.1) probably_damaging(0.942) TCGA-IN-A6RO-01 22 24129419 24129419 C A SMARCB1 Missense_Mutation p.D21E 0.12 tolerated(1) benign(0.002) TCGA-IN-A6RO-01 22 30736792 30736792 C T SF3A1 Missense_Mutation p.D361N 0.45 tolerated(0.06) benign(0.361) TCGA-IN-A6RO-01 22 31829850 31829859 CCATGCAGTG - DRG1 Splice_Site p.X335_splice 0.40 TCGA-IN-A6RO-01 22 38221183 38221183 C T GALR3 Silent p.A271A 0.14 TCGA-IN-A6RO-01 22 39410320 39410320 G C APOBEC3C 5'UTR 0.37 TCGA-IN-A6RO-01 22 43442433 43442433 G A TTLL1 Silent p.L375L 0.10 TCGA-IN-A6RO-01 22 43599926 43599926 C T SCUBE1 3'UTR 0.27 TCGA-IN-A6RO-01 2 10918726 10918755 ACTTCAGTGAAGCCTTCATTGCCTGGATCC - ATP6V1C2 In_Frame_Del p.F332_H341del 0.36 TCGA-IN-A6RO-01 2 113941039 113941039 G T PSD4 Missense_Mutation p.A336S 0.34 tolerated_low_confidence(0.3) benign(0.012) TCGA-IN-A6RO-01 2 116101407 116101407 T C DPP10 Missense_Mutation p.S68P 0.10 tolerated(0.32) benign(0.002) TCGA-IN-A6RO-01 2 124979336 124979336 C A CNTNAP5 Missense_Mutation p.S46Y 0.75 deleterious(0) probably_damaging(0.978) TCGA-IN-A6RO-01 2 125192138 125192138 G T CNTNAP5 Missense_Mutation p.D203Y 0.29 deleterious(0) benign(0.043) TCGA-IN-A6RO-01 2 135740901 135740901 C G MAP3K19 Intron 0.29 TCGA-IN-A6RO-01 2 141747131 141747131 T G LRP1B Missense_Mutation p.N914H 0.58 probably_damaging(0.986) TCGA-IN-A6RO-01 2 141747165 141747165 T A LRP1B Missense_Mutation p.R902S 0.54 possibly_damaging(0.899) TCGA-IN-A6RO-01 2 160735848 160735848 C A LY75-CD302 Missense_Mutation p.E479D 0.53 deleterious(0.03) probably_damaging(0.953) TCGA-IN-A6RO-01 2 164466844 164466844 C A FIGN Nonsense_Mutation p.E500* 0.34 TCGA-IN-A6RO-01 2 172584865 172584865 G C DYNC1I2 Silent p.L398L 0.69 TCGA-IN-A6RO-01 2 178305743 178305743 C A AGPS Missense_Mutation p.L230I 0.14 tolerated(0.18) benign(0.034) TCGA-IN-A6RO-01 2 179583310 179583310 T A TTN Nonsense_Mutation p.K8175* 0.50 TCGA-IN-A6RO-01 2 187521025 187521025 G A ITGAV Missense_Mutation p.R539Q 0.52 deleterious(0.01) probably_damaging(0.916) TCGA-IN-A6RO-01 2 202507388 202507388 G C TMEM237 Intron 0.07 TCGA-IN-A6RO-01 2 207170956 207170956 C T ZDBF2 Silent p.T568T 0.65 TCGA-IN-A6RO-01 2 220037339 220037339 G T CNPPD1 Missense_Mutation p.A401D 0.27 tolerated_low_confidence(0.14) possibly_damaging(0.655) TCGA-IN-A6RO-01 2 233721521 233721521 C A GIGYF2 Nonsense_Mutation p.S1305* 0.07 TCGA-IN-A6RO-01 2 25050898 25050898 C T ADCY3 Missense_Mutation p.V769M 0.40 tolerated(0.06) probably_damaging(0.99) TCGA-IN-A6RO-01 2 27167581 27167581 G A DPYSL5 Missense_Mutation p.V500M 0.39 tolerated(0.61) benign(0.004) TCGA-IN-A6RO-01 2 27528559 27528559 A G TRIM54 Silent p.Q281Q 0.33 TCGA-IN-A6RO-01 2 28631726 28631726 T G FOSL2 Missense_Mutation p.L152R 0.14 deleterious(0) probably_damaging(1) TCGA-IN-A6RO-01 2 39431694 39431694 C A CDKL4 Missense_Mutation p.C143F 0.15 deleterious(0) probably_damaging(0.993) TCGA-IN-A6RO-01 2 40656004 40656004 T A SLC8A1 Nonsense_Mutation p.K473* 0.23 TCGA-IN-A6RO-01 2 45826841 45826841 T - SRBD1 Frame_Shift_Del p.K132Sfs*2 0.12 TCGA-IN-A6RO-01 2 50464017 50464017 C A NRXN1 Silent p.L1192L 0.08 TCGA-IN-A6RO-01 2 55806900 55806900 T C SMEK2 Silent p.E461E 0.50 TCGA-IN-A6RO-01 2 56603050 56603050 C T CCDC85A Missense_Mutation p.P518S 0.53 tolerated_low_confidence(0.14) benign(0.005) TCGA-IN-A6RO-01 2 5832818 5832818 C T SOX11 5'UTR 0.27 TCGA-IN-A6RO-01 2 74734166 74734167 CA - PCGF1 Splice_Site p.X67_splice 0.30 TCGA-IN-A6RO-01 2 85571742 85571742 A - RETSAT Frame_Shift_Del p.Y411Tfs*50 0.17 TCGA-IN-A6RO-01 2 96949007 96949007 C A SNRNP200 Missense_Mutation p.G1616V 0.18 deleterious(0) probably_damaging(1) TCGA-IN-A6RO-01 3 114070238 114070238 C A ZBTB20 Silent p.S229S 0.60 TCGA-IN-A6RO-01 3 122447479 122447479 T C PARP14 3'UTR 0.25 TCGA-IN-A6RO-01 3 132213068 132213068 T C DNAJC13 Silent p.A1302A 0.28 TCGA-IN-A6RO-01 3 180322061 180322061 C A TTC14 Missense_Mutation p.P179T 0.16 deleterious(0.03) probably_damaging(0.995) TCGA-IN-A6RO-01 3 183967130 183967130 G C ALG3 5'Flank 0.50 TCGA-IN-A6RO-01 3 183994331 183994331 C T ECE2 Intron 0.42 TCGA-IN-A6RO-01 3 194118116 194118116 C T GP5 Missense_Mutation p.R299H 0.36 tolerated(0.5) benign(0.002) TCGA-IN-A6RO-01 3 196022894 196022894 G A TCTEX1D2 Missense_Mutation p.H122Y 0.33 tolerated(0.24) benign(0.013) TCGA-IN-A6RO-01 3 21606135 21606135 C T ZNF385D Silent p.G69G 0.12 TCGA-IN-A6RO-01 3 35723288 35723288 A G ARPP21 Silent p.G15G 0.08 TCGA-IN-A6RO-01 3 38913164 38913164 G A SCN11A Silent p.A1177A 0.37 TCGA-IN-A6RO-01 3 431088 431088 G T CHL1 Missense_Mutation p.V801F 0.09 deleterious(0) possibly_damaging(0.844) TCGA-IN-A6RO-01 3 43618239 43618239 C G ANO10 Silent p.V369V 0.57 TCGA-IN-A6RO-01 3 52550590 52550590 G A STAB1 Missense_Mutation p.D1425N 0.26 tolerated(0.13) benign(0.127) TCGA-IN-A6RO-01 3 52643942 52643943 - T PBRM1 Frame_Shift_Ins p.S652Ifs*13 0.22 TCGA-IN-A6RO-01 3 52678784 52678784 T - PBRM1 Frame_Shift_Del p.I279Yfs*4 0.35 TCGA-IN-A6RO-01 3 55504457 55504457 T G WNT5A Missense_Mutation p.K269T 0.61 deleterious(0) possibly_damaging(0.859) TCGA-IN-A6RO-01 3 97852255 97852255 T G OR5H1 Missense_Mutation p.F238L 0.25 tolerated(0.31) benign(0.436) TCGA-IN-A6RO-01 4 100829971 100829971 A T DNAJB14 Nonsense_Mutation p.C178* 0.24 TCGA-IN-A6RO-01 4 119145692 119145692 T G NDST3 Missense_Mutation p.L529R 0.60 deleterious(0) probably_damaging(0.996) TCGA-IN-A6RO-01 4 122791512 122791512 A T BBS7 5'UTR 0.47 TCGA-IN-A6RO-01 4 141832323 141832323 C A RNF150 Missense_Mutation p.E391D 0.61 tolerated(0.49) benign(0.001) TCGA-IN-A6RO-01 4 142053861 142053861 G A RNF150 Silent p.A34A 0.27 TCGA-IN-A6RO-01 4 144801641 144801641 G A GYPE Missense_Mutation p.S20L 0.39 tolerated_low_confidence(1) possibly_damaging(0.504) TCGA-IN-A6RO-01 4 155665371 155665371 G T LRAT 5'UTR 0.64 TCGA-IN-A6RO-01 4 155670188 155670188 C A LRAT Nonsense_Mutation p.S198* 0.49 TCGA-IN-A6RO-01 4 156824871 156824871 G C TDO2 5'UTR 0.53 TCGA-IN-A6RO-01 4 166960520 166960520 A C TLL1 Silent p.L396L 0.64 TCGA-IN-A6RO-01 4 183714431 183714431 G A TENM3 Silent p.T2202T 0.48 TCGA-IN-A6RO-01 4 25789889 25789892 TCCG - SEL1L3 Frame_Shift_Del p.T724Rfs*5 0.09 TCGA-IN-A6RO-01 4 37592151 37592151 G C C4orf19 Missense_Mutation p.M158I 0.33 tolerated(1) benign(0.003) TCGA-IN-A6RO-01 4 52860578 52860578 G T LRRC66 Silent p.A870A 0.48 TCGA-IN-A6RO-01 4 55979607 55979607 C G KDR Missense_Mutation p.Q280H 0.62 tolerated(0.19) possibly_damaging(0.704) TCGA-IN-A6RO-01 4 62599168 62599168 T A LPHN3 Missense_Mutation p.I364N 0.29 deleterious(0.03) probably_damaging(1) TCGA-IN-A6RO-01 4 65170950 65170950 C A TECRL Missense_Mutation p.A222S 0.15 tolerated(0.68) possibly_damaging(0.458) TCGA-IN-A6RO-01 4 68499962 68499962 G A UBA6 Nonsense_Mutation p.Q671* 0.33 TCGA-IN-A6RO-01 4 6863629 6863629 C T KIAA0232 Missense_Mutation p.T507M 0.61 deleterious(0.01) benign(0.328) TCGA-IN-A6RO-01 4 84347199 84347199 C T HELQ Missense_Mutation p.G908E 0.54 deleterious(0) probably_damaging(0.991) TCGA-IN-A6RO-01 4 94436443 94436443 C A GRID2 Missense_Mutation p.R692S 0.63 deleterious(0) possibly_damaging(0.663) TCGA-IN-A6RO-01 4 95239069 95239069 G C HPGDS Missense_Mutation p.L61V 0.10 tolerated(0.39) possibly_damaging(0.503) TCGA-IN-A6RO-01 5 134343758 134343758 C G CATSPER3 Missense_Mutation p.P202A 0.10 tolerated(0.1) benign(0.009) TCGA-IN-A6RO-01 5 140167790 140167790 G A PCDHA1 Missense_Mutation p.E639K 0.53 deleterious_low_confidence(0) possibly_damaging(0.821) TCGA-IN-A6RO-01 5 140242486 140242486 C T AC005609.1 Missense_Mutation p.A164T 0.33 possibly_damaging(0.695) TCGA-IN-A6RO-01 5 140250240 140250240 G A PCDHA11 Missense_Mutation p.A518T 0.25 deleterious_low_confidence(0.01) probably_damaging(0.938) TCGA-IN-A6RO-01 5 140725721 140725721 C T PCDHGA3 Silent p.F707F 0.09 TCGA-IN-A6RO-01 5 140896533 140896533 G A DIAPH1 Missense_Mutation p.S1235L 0.28 benign(0.029) TCGA-IN-A6RO-01 5 153855385 153855385 G A HAND1 Missense_Mutation p.A210V 0.24 deleterious(0) probably_damaging(0.999) TCGA-IN-A6RO-01 5 180472558 180472558 C G BTNL9 Silent p.L23L 0.22 TCGA-IN-A6RO-01 5 41176687 41176687 A G C6 Missense_Mutation p.L353S 0.14 deleterious(0.03) possibly_damaging(0.589) TCGA-IN-A6RO-01 6 105198276 105198277 - A HACE1 Frame_Shift_Ins p.L761Ffs*17 0.25 TCGA-IN-A6RO-01 6 132938390 132938390 A G TAAR2 Missense_Mutation p.Y319H 0.58 deleterious(0.01) probably_damaging(0.945) TCGA-IN-A6RO-01 6 133802608 133802608 C T EYA4 Silent p.F326F 0.23 TCGA-IN-A6RO-01 6 136922971 136922971 G C MAP3K5 Missense_Mutation p.S942R 0.52 tolerated(0.2) possibly_damaging(0.837) TCGA-IN-A6RO-01 6 166923827 166923827 G T RPS6KA2 Nonsense_Mutation p.S114* 0.22 TCGA-IN-A6RO-01 6 27833306 27833306 C T HIST1H2AL Silent p.Y58Y 0.06 TCGA-IN-A6RO-01 6 27839850 27839850 C G HIST1H3I Missense_Mutation p.D82H 0.28 deleterious_low_confidence(0.01) benign(0.006) TCGA-IN-A6RO-01 6 27860772 27860772 C A HIST1H2AM Silent p.L52L 0.24 TCGA-IN-A6RO-01 6 30879613 30879613 G A GTF2H4 Intron 0.38 TCGA-IN-A6RO-01 6 31323183 31323183 G T HLA-B Missense_Mutation p.A269E 0.50 deleterious_low_confidence(0) possibly_damaging(0.895) TCGA-IN-A6RO-01 6 34214850 34214850 C G C6orf1 Missense_Mutation p.R32S 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.895) TCGA-IN-A6RO-01 6 35200674 35200674 C T SCUBE3 Missense_Mutation p.R173W 0.05 deleterious(0.02) probably_damaging(0.993) TCGA-IN-A6RO-01 6 38851126 38851126 C A DNAH8 Missense_Mutation p.T2460N 0.19 probably_damaging(0.982) TCGA-IN-A6RO-01 6 39513398 39513398 C T KIF6 Silent p.A416A 0.21 TCGA-IN-A6RO-01 6 43173095 43173095 G A CUL9 Missense_Mutation p.R1576Q 0.40 tolerated(1) benign(0.014) TCGA-IN-A6RO-01 6 44921156 44921156 T C SUPT3H Splice_Site p.X243_splice 0.28 TCGA-IN-A6RO-01 6 69772827 69772827 A T BAI3 Missense_Mutation p.N779Y 0.16 deleterious(0) probably_damaging(0.999) TCGA-IN-A6RO-01 6 83075015 83075015 C T TPBG Missense_Mutation p.R113C 0.61 deleterious(0.02) probably_damaging(0.917) TCGA-IN-A6RO-01 6 88854385 88854385 G A CNR1 Silent p.S203S 0.09 TCGA-IN-A6RO-01 6 91281445 91281445 C T MAP3K7 Missense_Mutation p.E68K 0.50 deleterious(0) possibly_damaging(0.754) TCGA-IN-A6RO-01 7 101091051 101091051 G T COL26A1 Missense_Mutation p.G123V 0.23 deleterious(0) probably_damaging(0.998) TCGA-IN-A6RO-01 7 103155638 103155638 T G RELN Missense_Mutation p.T2705P 0.38 tolerated(0.19) probably_damaging(0.997) TCGA-IN-A6RO-01 7 105190918 105190918 A T RINT1 Missense_Mutation p.T440S 0.41 tolerated(0.18) benign(0.145) TCGA-IN-A6RO-01 7 106508552 106508552 C A PIK3CG Silent p.T182T 0.11 TCGA-IN-A6RO-01 7 106508565 106508565 G C PIK3CG Missense_Mutation p.E187Q 0.10 deleterious(0.05) possibly_damaging(0.688) TCGA-IN-A6RO-01 7 107572745 107572745 C T LAMB1 Silent p.E1422E 0.49 TCGA-IN-A6RO-01 7 121695088 121695088 C G PTPRZ1 Missense_Mutation p.L2159V 0.42 deleterious(0.03) possibly_damaging(0.573) TCGA-IN-A6RO-01 7 127252039 127252039 A T PAX4 Missense_Mutation p.L236Q 0.18 tolerated(0.1) possibly_damaging(0.737) TCGA-IN-A6RO-01 7 136699890 136699890 C T CHRM2 Missense_Mutation p.P93L 0.47 deleterious(0.03) possibly_damaging(0.672) TCGA-IN-A6RO-01 7 142168470 142168470 C A TRBV5-4 Missense_Mutation p.G85C 0.05 deleterious(0.01) possibly_damaging(0.754) TCGA-IN-A6RO-01 7 142423213 142423213 G T TRBV27 5'UTR 0.27 TCGA-IN-A6RO-01 7 142567977 142567977 C A EPHB6 Missense_Mutation p.A873E 0.46 deleterious(0) probably_damaging(1) TCGA-IN-A6RO-01 7 158826913 158826913 G A VIPR2 Missense_Mutation p.S321F 0.20 deleterious(0.01) probably_damaging(0.983) TCGA-IN-A6RO-01 7 24849541 24849541 C T OSBPL3 Silent p.E734E 0.41 TCGA-IN-A6RO-01 7 30795287 30795287 C T INMT Silent p.Y204Y 0.16 TCGA-IN-A6RO-01 7 38433793 38433793 C T AMPH Missense_Mutation p.D474N 0.38 deleterious(0.03) benign(0.309) TCGA-IN-A6RO-01 7 41739888 41739888 G A INHBA Missense_Mutation p.H29Y 0.43 tolerated(0.18) benign(0) TCGA-IN-A6RO-01 7 4277373 4277373 C T SDK1 Silent p.L2029L 0.37 TCGA-IN-A6RO-01 7 44150787 44150787 G A AEBP1 Silent p.V555V 0.24 TCGA-IN-A6RO-01 7 47408900 47408900 C T TNS3 Missense_Mutation p.R448Q 0.23 tolerated(0.58) benign(0.004) TCGA-IN-A6RO-01 7 81386587 81386587 G A HGF Missense_Mutation p.R134C 0.15 tolerated(0.05) benign(0.382) TCGA-IN-A6RO-01 7 81388061 81388061 G T HGF Nonsense_Mutation p.S105* 0.20 TCGA-IN-A6RO-01 7 82545485 82545485 T G PCLO Missense_Mutation p.Q3939H 0.44 unknown(0) TCGA-IN-A6RO-01 7 91708840 91708840 C G AKAP9 Missense_Mutation p.L2465V 0.19 benign(0.009) TCGA-IN-A6RO-01 7 92844979 92844979 C T HEPACAM2 Silent p.V150V 0.15 TCGA-IN-A6RO-01 7 94052403 94052403 G T COL1A2 Missense_Mutation p.K846N 0.15 unknown(0) TCGA-IN-A6RO-01 7 94913575 94913575 C T PPP1R9A Missense_Mutation p.P1181L 0.18 tolerated(0.24) benign(0.001) TCGA-IN-A6RO-01 7 95023958 95023958 A C PON3 Missense_Mutation p.L48R 0.53 deleterious(0) possibly_damaging(0.678) TCGA-IN-A6RO-01 8 100523647 100523647 C G VPS13B Missense_Mutation p.L1539V 0.19 deleterious(0.03) possibly_damaging(0.899) TCGA-IN-A6RO-01 8 105509379 105509379 A C LRP12 Missense_Mutation p.S467R 0.51 deleterious(0) probably_damaging(0.999) TCGA-IN-A6RO-01 8 10584032 10584032 C T SOX7 Missense_Mutation p.R180H 0.86 deleterious(0) probably_damaging(0.994) TCGA-IN-A6RO-01 8 113347685 113347685 A C CSMD3 Missense_Mutation p.N2346K 0.51 deleterious(0.03) benign(0.063) TCGA-IN-A6RO-01 8 12958192 12958192 C G DLC1 Missense_Mutation p.E552Q 0.38 deleterious(0.04) possibly_damaging(0.685) TCGA-IN-A6RO-01 8 131792852 131792852 G T ADCY8 Silent p.I1180I 0.25 TCGA-IN-A6RO-01 8 13948096 13948096 G T SGCZ Silent p.S265S 0.31 TCGA-IN-A6RO-01 8 141293997 141293997 G A TRAPPC9 Missense_Mutation p.S800F 0.41 deleterious(0) possibly_damaging(0.488) TCGA-IN-A6RO-01 8 26237947 26237947 G A BNIP3L 5'Flank 0.36 TCGA-IN-A6RO-01 8 27762304 27762304 C T SCARA5 Missense_Mutation p.G382R 0.80 deleterious(0.02) benign(0.114) TCGA-IN-A6RO-01 8 27925085 27925085 C T NUGGC Silent p.A219A 0.27 TCGA-IN-A6RO-01 8 37756945 37756945 G C RAB11FIP1 Silent p.V5V 0.14 TCGA-IN-A6RO-01 8 51306786 51306786 G T SNTG1 5'UTR 0.19 TCGA-IN-A6RO-01 8 69011960 69011960 A C PREX2 Missense_Mutation p.N866T 0.51 tolerated(0.08) benign(0.001) TCGA-IN-A6RO-01 9 101824355 101824355 G T COL15A1 Missense_Mutation p.V1169F 0.04 deleterious(0) probably_damaging(0.997) TCGA-IN-A6RO-01 9 116930114 116930114 C G COL27A1 Silent p.A93A 0.16 TCGA-IN-A6RO-01 9 130073920 130073920 A T GARNL3 Silent p.A75A 0.44 TCGA-IN-A6RO-01 9 131198095 131198095 G A CERCAM Missense_Mutation p.G567S 0.37 tolerated(0.27) probably_damaging(0.997) TCGA-IN-A6RO-01 9 138606523 138606523 C T KCNT1 Missense_Mutation p.R71W 0.64 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-IN-A6RO-01 9 139275844 139275844 G A SNAPC4 Missense_Mutation p.A773V 0.30 deleterious(0) possibly_damaging(0.695) TCGA-IN-A6RO-01 9 94499750 94499750 C T ROR2 Missense_Mutation p.C182Y 0.36 deleterious(0) probably_damaging(1) TCGA-IN-A6RO-01 X 100646541 100646541 T A RPL36A-HNRNPH2 Missense_Mutation p.L44Q 0.93 deleterious_low_confidence(0.04) probably_damaging(0.918) TCGA-IN-A6RO-01 X 105193681 105193681 T G NRK Missense_Mutation p.F1491V 0.85 deleterious(0.03) benign(0.355) TCGA-IN-A6RO-01 X 11316866 11316866 C T AMELX Missense_Mutation p.H129Y 0.42 tolerated(0.19) unknown(0) TCGA-IN-A6RO-01 X 123220423 123220423 C A STAG2 Missense_Mutation p.T1027N 0.17 tolerated(0.12) benign(0.085) TCGA-IN-A6RO-01 X 125686265 125686265 C A DCAF12L1 Missense_Mutation p.R109S 0.89 deleterious(0.03) benign(0.099) TCGA-IN-A6RO-01 X 155003813 155003813 G A SPRY3 Missense_Mutation p.A94T 0.30 tolerated(0.26) benign(0.027) TCGA-IN-A6RO-01 X 21874728 21874728 C T YY2 Silent p.Y42Y 0.87 TCGA-IN-A6RO-01 X 48839408 48839420 GCCGTTCAAACCA - GRIPAP1 Frame_Shift_Del p.W524Afs*2 0.85 TCGA-IN-A6RO-01 X 67936225 67936225 G C STARD8 Missense_Mutation p.L83F 0.91 deleterious(0) probably_damaging(0.945) TCGA-IN-A6RO-01 X 70627998 70627998 A G TAF1 Missense_Mutation p.N1481D 0.95 deleterious(0) probably_damaging(0.996) TCGA-IN-A6RO-01 X 74289232 74289232 C T ABCB7 Missense_Mutation p.D476N 0.52 deleterious(0.04) benign(0.088) TCGA-IN-A6RO-01 X 99662960 99662960 G A PCDH19 Silent p.D212D 0.43 TCGA-IN-A6RP-01 10 124331835 124331835 C T DMBT1 Missense_Mutation p.P65S 0.04 tolerated_low_confidence(0.39) benign(0.066) TCGA-IN-A6RP-01 10 135350609 135350609 G A CYP2E1 Missense_Mutation p.R337Q 0.44 tolerated(0.06) possibly_damaging(0.547) TCGA-IN-A6RP-01 10 26462699 26462699 T C MYO3A Missense_Mutation p.F1169S 0.07 tolerated(0.64) benign(0.004) TCGA-IN-A6RP-01 10 30915848 30915848 C G LYZL2 Missense_Mutation p.L45F 0.04 deleterious(0.02) benign(0.233) TCGA-IN-A6RP-01 10 5008192 5008192 T C AKR1C1 Silent p.N57N 0.10 TCGA-IN-A6RP-01 10 54040664 54040664 C T PRKG1 Silent p.L507L 0.15 TCGA-IN-A6RP-01 10 61552820 61552820 G A CCDC6 Missense_Mutation p.T427M 0.49 deleterious_low_confidence(0) unknown(0) TCGA-IN-A6RP-01 10 6472807 6472807 G A PRKCQ Missense_Mutation p.R644W 0.18 deleterious(0) possibly_damaging(0.472) TCGA-IN-A6RP-01 11 114167268 114167268 A C NNMT 5'UTR 0.24 TCGA-IN-A6RP-01 11 121448047 121448047 C T SORL1 Missense_Mutation p.S1173F 0.41 tolerated(0.06) possibly_damaging(0.515) TCGA-IN-A6RP-01 11 122929368 122929368 C G HSPA8 Missense_Mutation p.E498D 0.35 deleterious_low_confidence(0.03) probably_damaging(0.986) TCGA-IN-A6RP-01 11 123813782 123813782 G T OR6T1 Missense_Mutation p.S255Y 0.22 deleterious(0.02) probably_damaging(0.937) TCGA-IN-A6RP-01 11 35547170 35547170 G T PAMR1 5'UTR 0.20 TCGA-IN-A6RP-01 11 55904620 55904620 G A OR8J3 Missense_Mutation p.T192I 0.13 deleterious(0.04) probably_damaging(0.97) TCGA-IN-A6RP-01 11 5878172 5878172 A C OR52E8 Nonsense_Mutation p.L254* 0.05 TCGA-IN-A6RP-01 11 68193553 68193553 C T LRP5 Missense_Mutation p.R1179C 0.15 deleterious(0) possibly_damaging(0.75) TCGA-IN-A6RP-01 11 86158190 86158190 G A ME3 Missense_Mutation p.H433Y 0.17 deleterious(0) benign(0.31) TCGA-IN-A6RP-01 12 15650271 15650271 A G PTPRO Missense_Mutation p.N148D 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.892) TCGA-IN-A6RP-01 12 5021464 5021464 G A KCNA1 Missense_Mutation p.R307H 0.05 deleterious(0) probably_damaging(0.999) TCGA-IN-A6RP-01 12 5604101 5604101 C T NTF3 Missense_Mutation p.R254W 0.12 deleterious(0) probably_damaging(0.989) TCGA-IN-A6RP-01 12 56607753 56607753 C T RNF41 Missense_Mutation p.E27K 0.37 deleterious(0.03) probably_damaging(0.992) TCGA-IN-A6RP-01 12 6778309 6778309 T C ZNF384 Missense_Mutation p.N407S 0.09 deleterious(0.01) probably_damaging(0.996) TCGA-IN-A6RP-01 12 7287991 7287991 G A CLSTN3 Missense_Mutation p.R151H 0.30 tolerated(0.2) benign(0.026) TCGA-IN-A6RP-01 12 85285644 85285644 G A SLC6A15 Nonsense_Mutation p.R86* 0.63 TCGA-IN-A6RP-01 12 89744622 89744622 G A DUSP6 Missense_Mutation p.S194L 0.23 tolerated(0.11) benign(0.009) TCGA-IN-A6RP-01 12 99007735 99007735 C T IKBIP Silent p.T227T 0.57 TCGA-IN-A6RP-01 13 102368117 102368118 - T ITGBL1 3'UTR 0.28 TCGA-IN-A6RP-01 13 32911836 32911836 C T BRCA2 Missense_Mutation p.S1115F 0.29 deleterious(0) probably_damaging(1) TCGA-IN-A6RP-01 13 35770201 35770201 G A NBEA Missense_Mutation p.E1710K 0.20 deleterious_low_confidence(0.04) benign(0.097) TCGA-IN-A6RP-01 13 84454576 84454576 T G SLITRK1 Missense_Mutation p.K356T 0.14 tolerated(0.09) benign(0.004) TCGA-IN-A6RP-01 13 88328837 88328837 C A SLITRK5 Silent p.I398I 0.17 TCGA-IN-A6RP-01 14 105849775 105849775 C T PACS2 Missense_Mutation p.R569W 0.38 deleterious(0) probably_damaging(1) TCGA-IN-A6RP-01 14 106110907 106110907 C G IGHG2 Missense_Mutation p.S74T 0.15 deleterious(0.02) probably_damaging(0.977) TCGA-IN-A6RP-01 14 24535653 24535653 G A LRRC16B Missense_Mutation p.R1191Q 0.24 tolerated(0.12) unknown(0) TCGA-IN-A6RP-01 14 60072171 60072171 G A RTN1 Missense_Mutation p.T676M 0.11 deleterious(0.03) probably_damaging(0.998) TCGA-IN-A6RP-01 14 86088495 86088495 G A FLRT2 Missense_Mutation p.G213R 0.34 deleterious(0) probably_damaging(0.997) TCGA-IN-A6RP-01 14 88967137 88967137 C T PTPN21 Missense_Mutation p.V252M 0.13 tolerated(0.15) possibly_damaging(0.806) TCGA-IN-A6RP-01 15 27574004 27574004 C T GABRG3 Silent p.D181D 0.10 TCGA-IN-A6RP-01 15 41476611 41476611 A T EXD1 Missense_Mutation p.L355I 0.09 deleterious(0.03) benign(0.367) TCGA-IN-A6RP-01 15 60734733 60734733 A C NARG2 Silent p.V769V 0.07 TCGA-IN-A6RP-01 15 62302673 62302673 G C VPS13C Missense_Mutation p.Q337E 0.22 deleterious(0) probably_damaging(0.997) TCGA-IN-A6RP-01 15 66774194 66774194 G A MAP2K1 Missense_Mutation p.V224M 0.08 deleterious(0.04) possibly_damaging(0.906) TCGA-IN-A6RP-01 15 73562536 73562536 C T NEO1 Nonsense_Mutation p.R894* 0.12 TCGA-IN-A6RP-01 15 76073330 76073330 G A RN7SL319P 5'Flank 0.10 TCGA-IN-A6RP-01 15 79750690 79750690 G A KIAA1024 Missense_Mutation p.R734H 0.18 deleterious(0.02) benign(0.062) TCGA-IN-A6RP-01 16 20328576 20328576 C T GP2 Missense_Mutation p.E462K 0.27 deleterious(0) probably_damaging(0.986) TCGA-IN-A6RP-01 16 3297076 3297076 G A MEFV Silent p.L509L 0.04 TCGA-IN-A6RP-01 16 49669727 49669727 G A ZNF423 Silent p.P1112P 0.25 TCGA-IN-A6RP-01 16 61851406 61851406 A G CDH8 Silent p.P418P 0.15 TCGA-IN-A6RP-01 16 68293632 68293632 G A PLA2G15 3'UTR 0.47 TCGA-IN-A6RP-01 16 70867965 70867965 C T HYDIN Missense_Mutation p.E4502K 0.12 possibly_damaging(0.801) TCGA-IN-A6RP-01 16 77227645 77227645 C T MON1B Missense_Mutation p.A149V 0.29 deleterious(0.03) benign(0.22) TCGA-IN-A6RP-01 16 84256130 84256130 G A KCNG4 Missense_Mutation p.T418M 0.06 deleterious(0) probably_damaging(0.999) TCGA-IN-A6RP-01 16 87960481 87960481 C A CA5A Missense_Mutation p.W71C 0.42 tolerated(0.19) benign(0.011) TCGA-IN-A6RP-01 17 14248369 14248369 C T HS3ST3B1 Silent p.D193D 0.17 TCGA-IN-A6RP-01 17 1937089 1937089 G A DPH1 Silent p.P82P 0.12 TCGA-IN-A6RP-01 17 293149 293149 C T FAM101B Missense_Mutation p.E81K 0.53 deleterious(0.04) possibly_damaging(0.848) TCGA-IN-A6RP-01 17 36861913 36861914 - T MLLT6 Frame_Shift_Ins p.C11Mfs*45 0.27 TCGA-IN-A6RP-01 17 38024588 38024588 G A ZPBP2 5'UTR 0.35 TCGA-IN-A6RP-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.17 deleterious(0) probably_damaging(1) TCGA-IN-A6RP-01 17 80352405 80352405 G A OGFOD3 Missense_Mutation p.R280W 0.24 deleterious_low_confidence(0.04) benign(0) TCGA-IN-A6RP-01 17 8793325 8793325 G A PIK3R5 Missense_Mutation p.A259V 0.45 tolerated(0.27) benign(0.028) TCGA-IN-A6RP-01 18 13068139 13068139 G A CEP192 Missense_Mutation p.R1554Q 0.09 tolerated(0.21) benign(0.11) TCGA-IN-A6RP-01 18 2566839 2566839 G A METTL4 Missense_Mutation p.S126F 0.17 tolerated(0.41) benign(0.004) TCGA-IN-A6RP-01 18 2578995 2578995 G A NDC80 Silent p.V182V 0.10 TCGA-IN-A6RP-01 18 34340742 34340742 C T FHOD3 Nonsense_Mutation p.R1358* 0.89 TCGA-IN-A6RP-01 18 3534261 3534261 G A DLGAP1 Nonsense_Mutation p.R804* 0.11 TCGA-IN-A6RP-01 18 5416299 5416299 G A EPB41L3 Missense_Mutation p.R529C 0.17 deleterious(0.01) possibly_damaging(0.886) TCGA-IN-A6RP-01 19 1073509 1073509 C T HMHA1 Silent p.F206F 0.24 TCGA-IN-A6RP-01 19 11144113 11144113 G A SMARCA4 Missense_Mutation p.G1232S 0.32 possibly_damaging(0.797) TCGA-IN-A6RP-01 19 2717373 2717373 G A DIRAS1 Silent p.C144C 0.29 TCGA-IN-A6RP-01 19 43763168 43763168 C T PSG9 Missense_Mutation p.G277S 0.31 deleterious(0) possibly_damaging(0.61) TCGA-IN-A6RP-01 19 44980912 44980912 G A ZNF180 Nonsense_Mutation p.Q596* 0.22 TCGA-IN-A6RP-01 19 44980957 44980957 G A ZNF180 Nonsense_Mutation p.Q581* 0.18 TCGA-IN-A6RP-01 19 44981248 44981248 G C ZNF180 Missense_Mutation p.Q484E 0.14 deleterious(0.02) probably_damaging(0.953) TCGA-IN-A6RP-01 19 45293274 45293274 G A CBLC Missense_Mutation p.D311N 0.33 tolerated(0.26) benign(0.027) TCGA-IN-A6RP-01 19 45974160 45974160 C T FOSB Missense_Mutation p.P134S 0.10 tolerated_low_confidence(0.1) possibly_damaging(0.641) TCGA-IN-A6RP-01 19 49249157 49249157 G A IZUMO1 5'UTR 0.29 TCGA-IN-A6RP-01 19 54377192 54377192 G A MYADM Missense_Mutation p.A137T 0.31 deleterious(0.02) possibly_damaging(0.811) TCGA-IN-A6RP-01 19 58102719 58102719 A C ZIK1 3'UTR 0.25 TCGA-IN-A6RP-01 19 58564894 58564894 G A ZSCAN1 Silent p.V234V 0.16 TCGA-IN-A6RP-01 19 757997 757997 G A MISP Missense_Mutation p.V351M 0.50 deleterious(0.02) possibly_damaging(0.907) TCGA-IN-A6RP-01 19 8922235 8922235 C T ZNF558 Missense_Mutation p.V311I 0.30 tolerated(0.46) benign(0.005) TCGA-IN-A6RP-01 19 9074884 9074884 G T MUC16 Missense_Mutation p.P4188T 0.13 unknown(0) TCGA-IN-A6RP-01 19 9452409 9452409 C G ZNF559 Missense_Mutation p.N94K 0.28 tolerated(1) benign(0.016) TCGA-IN-A6RP-01 1 103352579 103352579 T A COL11A1 Missense_Mutation p.I1548F 0.26 unknown(0) TCGA-IN-A6RP-01 1 111216188 111216188 G A KCNA3 Missense_Mutation p.A415V 0.23 deleterious(0) probably_damaging(0.981) TCGA-IN-A6RP-01 1 115537515 115537515 C G SYCP1 Missense_Mutation p.L936V 0.21 tolerated(0.23) benign(0.026) TCGA-IN-A6RP-01 1 156821834 156821840 GGCAGGC - INSRR Frame_Shift_Del p.A261Rfs*68 0.16 TCGA-IN-A6RP-01 1 15886050 15886050 C T DNAJC16 Silent p.D351D 0.07 TCGA-IN-A6RP-01 1 186375324 186375324 C T C1orf27 Silent p.I370I 0.04 TCGA-IN-A6RP-01 1 192128414 192128414 C T RGS18 Missense_Mutation p.R62C 0.29 tolerated(0.1) benign(0.009) TCGA-IN-A6RP-01 1 196254881 196254881 C T KCNT2 Missense_Mutation p.R868Q 0.39 deleterious(0.01) benign(0.022) TCGA-IN-A6RP-01 1 200968548 200968548 C T KIF21B Missense_Mutation p.R605H 0.09 tolerated(0.13) benign(0.001) TCGA-IN-A6RP-01 1 208252769 208252769 G A PLXNA2 Missense_Mutation p.R808W 0.38 deleterious(0) probably_damaging(0.995) TCGA-IN-A6RP-01 1 2160478 2160478 C T SKI Silent p.F91F 0.28 TCGA-IN-A6RP-01 1 220441011 220441011 C A RAB3GAP2 Intron 0.34 TCGA-IN-A6RP-01 1 248845077 248845077 G A OR14I1 Missense_Mutation p.R177C 0.06 tolerated(1) benign(0) TCGA-IN-A6RP-01 1 2938312 2938312 G A ACTRT2 Missense_Mutation p.C21Y 0.29 deleterious(0) probably_damaging(0.992) TCGA-IN-A6RP-01 1 33956750 33956750 C T ZSCAN20 Nonsense_Mutation p.Q298* 0.21 TCGA-IN-A6RP-01 1 37948666 37948666 A G ZC3H12A Silent p.T418T 0.29 TCGA-IN-A6RP-01 1 45810644 45810644 G T TESK2 Silent p.P528P 0.35 TCGA-IN-A6RP-01 1 45811150 45811150 G A TESK2 Missense_Mutation p.R360C 0.38 deleterious(0.01) probably_damaging(0.972) TCGA-IN-A6RP-01 1 68895557 68895557 G A RPE65 Missense_Mutation p.L502F 0.12 deleterious(0) probably_damaging(0.963) TCGA-IN-A6RP-01 1 71536547 71536547 G A ZRANB2 Missense_Mutation p.R216C 0.38 tolerated(0.08) unknown(0) TCGA-IN-A6RP-01 20 23473666 23473666 T G CST8 Silent p.T101T 0.08 TCGA-IN-A6RP-01 20 44506132 44506132 G A ZSWIM3 Missense_Mutation p.R312Q 0.07 tolerated(0.08) benign(0.153) TCGA-IN-A6RP-01 20 49211914 49211914 A G FAM65C Missense_Mutation p.I677T 0.08 tolerated(0.2) benign(0.025) TCGA-IN-A6RP-01 20 60909037 60909037 C T LAMA5 Missense_Mutation p.R933Q 0.17 probably_damaging(0.986) TCGA-IN-A6RP-01 21 32127676 32127676 G T KRTAP21-1 Silent p.G7G 0.30 TCGA-IN-A6RP-01 21 33076196 33076196 G C SCAF4 Nonsense_Mutation p.S68* 0.33 TCGA-IN-A6RP-01 21 45959607 45959607 C T KRTAP10-1 Missense_Mutation p.V143M 0.09 tolerated(0.07) unknown(0) TCGA-IN-A6RP-01 22 17662742 17662742 C T CECR1 Silent p.R470R 0.54 TCGA-IN-A6RP-01 22 17690543 17690543 G A CECR1 Missense_Mutation p.R9W 0.17 deleterious_low_confidence(0.04) benign(0) TCGA-IN-A6RP-01 22 18907072 18907072 G A PRODH Silent p.A381A 0.24 TCGA-IN-A6RP-01 22 23154590 23154590 G C IGLV3-10 Missense_Mutation p.W53C 0.31 deleterious(0) probably_damaging(1) TCGA-IN-A6RP-01 2 125261960 125261960 C G CNTNAP5 Missense_Mutation p.P384R 0.30 deleterious(0.03) probably_damaging(0.933) TCGA-IN-A6RP-01 2 138169429 138169429 C A THSD7B Missense_Mutation p.F982L 0.19 tolerated(0.83) benign(0.294) TCGA-IN-A6RP-01 2 152554109 152554109 G A NEB Silent p.C402C 0.22 TCGA-IN-A6RP-01 2 162930497 162930497 G A DPP4 5'UTR 0.28 TCGA-IN-A6RP-01 2 179401240 179401240 C T TTN Missense_Mutation p.A33412T 0.22 TCGA-IN-A6RP-01 2 179485078 179485078 C T TTN Silent p.P15390P 0.20 TCGA-IN-A6RP-01 2 179656861 179656861 C G TTN Missense_Mutation p.E534Q 0.12 TCGA-IN-A6RP-01 2 197712755 197712755 C A PGAP1 Missense_Mutation p.C623F 0.21 deleterious(0) probably_damaging(0.961) TCGA-IN-A6RP-01 2 198641828 198641828 G A BOLL Silent p.F89F 0.11 TCGA-IN-A6RP-01 2 202259577 202259577 C T TRAK2 Missense_Mutation p.E307K 0.18 deleterious(0) probably_damaging(1) TCGA-IN-A6RP-01 2 202260143 202260143 C G TRAK2 Missense_Mutation p.R265T 0.17 tolerated(0.48) benign(0.063) TCGA-IN-A6RP-01 2 223065899 223065899 C A PAX3 Missense_Mutation p.E504D 0.14 tolerated_low_confidence(0.21) benign(0.001) TCGA-IN-A6RP-01 2 231624768 231624768 A T CAB39 Missense_Mutation p.N18Y 0.07 tolerated(0.28) benign(0.191) TCGA-IN-A6RP-01 2 231624774 231624774 A T CAB39 Nonsense_Mutation p.K20* 0.06 TCGA-IN-A6RP-01 2 231775046 231775046 C T GPR55 Missense_Mutation p.R211H 0.09 tolerated(0.74) benign(0.015) TCGA-IN-A6RP-01 2 233348908 233348908 G A ECEL1 Missense_Mutation p.R404C 0.16 deleterious(0) probably_damaging(0.999) TCGA-IN-A6RP-01 2 24443845 24443845 C T ITSN2 Missense_Mutation p.R1223Q 0.06 tolerated(0.13) unknown(0) TCGA-IN-A6RP-01 2 27677454 27677454 C A IFT172 Missense_Mutation p.A1149S 0.18 deleterious(0.01) probably_damaging(0.967) TCGA-IN-A6RP-01 2 32352069 32352069 C T SPAST Missense_Mutation p.P384L 0.22 deleterious(0) probably_damaging(1) TCGA-IN-A6RP-01 2 39278343 39278343 A T SOS1 Missense_Mutation p.M269K 0.17 deleterious(0) probably_damaging(0.918) TCGA-IN-A6RP-01 2 80831299 80831299 G T CTNNA2 Missense_Mutation p.D764Y 0.16 deleterious(0) possibly_damaging(0.847) TCGA-IN-A6RP-01 2 88408026 88408026 G A SMYD1 Missense_Mutation p.G428R 0.09 deleterious(0) probably_damaging(0.999) TCGA-IN-A6RP-01 3 142275400 142275400 G A ATR Nonsense_Mutation p.R635* 0.28 TCGA-IN-A6RP-01 3 179306671 179306671 T G MRPL47 Missense_Mutation p.S248R 0.11 deleterious_low_confidence(0.04) benign(0.03) TCGA-IN-A6RP-01 3 184039582 184039582 C T EIF4G1 Missense_Mutation p.L411F 0.18 tolerated(0.07) probably_damaging(0.99) TCGA-IN-A6RP-01 3 19479730 19479730 C T KCNH8 Nonsense_Mutation p.R418* 0.52 TCGA-IN-A6RP-01 3 30729979 30729980 - C TGFBR2 Frame_Shift_Ins p.S527Qfs*14 0.09 TCGA-IN-A6RP-01 3 38597190 38597190 T G SCN5A Missense_Mutation p.K1500T 0.52 deleterious(0) probably_damaging(0.999) TCGA-IN-A6RP-01 3 97466293 97466293 C T EPHA6 Missense_Mutation p.P1052L 0.57 deleterious(0.03) benign(0.21) TCGA-IN-A6RP-01 3 9990795 9990795 C T PRRT3 Silent p.P335P 0.47 TCGA-IN-A6RP-01 4 104577407 104577407 C A TACR3 Nonsense_Mutation p.E278* 0.48 TCGA-IN-A6RP-01 4 111397617 111397617 C T ENPEP Missense_Mutation p.T16M 0.10 tolerated_low_confidence(0.07) possibly_damaging(0.561) TCGA-IN-A6RP-01 4 113353715 113353715 C T ALPK1 Silent p.P1004P 0.18 TCGA-IN-A6RP-01 4 119951688 119951688 T C SYNPO2 Silent p.N586N 0.09 TCGA-IN-A6RP-01 4 13600735 13600735 G A BOD1L1 Missense_Mutation p.P2597S 0.47 benign(0.045) TCGA-IN-A6RP-01 4 189020199 189020199 G A TRIML2 Missense_Mutation p.A154V 0.10 tolerated(0.36) benign(0.003) TCGA-IN-A6RP-01 4 47033560 47033560 C T GABRB1 5'UTR 0.27 TCGA-IN-A6RP-01 4 47405441 47405441 G C GABRB1 Missense_Mutation p.K217N 0.12 tolerated(0.16) benign(0.093) TCGA-IN-A6RP-01 4 72897735 72897735 C T NPFFR2 Silent p.R39R 0.19 TCGA-IN-A6RP-01 4 96091390 96091390 G A UNC5C Missense_Mutation p.R849W 0.13 deleterious(0) probably_damaging(1) TCGA-IN-A6RP-01 5 102338844 102338845 - A PAM Frame_Shift_Ins p.N576Kfs*13 0.12 TCGA-IN-A6RP-01 5 112175951 112175952 - A APC Frame_Shift_Ins p.T1556Nfs*3 0.31 TCGA-IN-A6RP-01 5 132232559 132232559 G T AFF4 Missense_Mutation p.T588N 0.09 tolerated(0.11) possibly_damaging(0.906) TCGA-IN-A6RP-01 5 140531355 140531355 C T PCDHB6 Missense_Mutation p.A506V 0.54 deleterious(0.01) benign(0.068) TCGA-IN-A6RP-01 5 140718743 140718743 A - PCDHGA2 Frame_Shift_Del p.R69Efs*9 0.09 TCGA-IN-A6RP-01 5 140731511 140731511 G A PCDHGB1 Missense_Mutation p.A562T 0.32 tolerated(0.23) benign(0.093) TCGA-IN-A6RP-01 5 140749978 140749978 G T PCDHGB3 Missense_Mutation p.G6V 0.43 tolerated(0.13) benign(0.207) TCGA-IN-A6RP-01 5 167627103 167627103 G A TENM2 Missense_Mutation p.G1133S 0.52 tolerated(0.26) benign(0.08) TCGA-IN-A6RP-01 5 178359223 178359223 C T ZFP2 Silent p.C303C 0.07 TCGA-IN-A6RP-01 5 83680162 83680162 C A EDIL3 Missense_Mutation p.V11F 0.40 tolerated(0.11) benign(0.004) TCGA-IN-A6RP-01 6 129371151 129371151 C A LAMA2 Nonsense_Mutation p.C67* 0.12 TCGA-IN-A6RP-01 6 143929406 143929406 C T PHACTR2 5'UTR 0.28 TCGA-IN-A6RP-01 6 153042975 153042975 G T MYCT1 Missense_Mutation p.A99S 0.06 tolerated(0.11) probably_damaging(0.998) TCGA-IN-A6RP-01 6 26156614 26156614 T C HIST1H1E 5'UTR 0.07 TCGA-IN-A6RP-01 6 27861305 27861305 C G HIST1H2BO Missense_Mutation p.A22G 0.09 tolerated_low_confidence(0.07) unknown(0) TCGA-IN-A6RP-01 6 28056607 28056607 G A ZNF165 Missense_Mutation p.D273N 0.34 tolerated(0.61) benign(0.002) TCGA-IN-A6RP-01 6 31590899 31590899 G A PRRC2A Intron 0.11 TCGA-IN-A6RP-01 6 32011597 32011597 C G TNXB Missense_Mutation p.R249P 0.06 deleterious(0.02) possibly_damaging(0.826) TCGA-IN-A6RP-01 6 32372905 32372905 C T BTNL2 Missense_Mutation p.G80R 0.13 deleterious(0) probably_damaging(1) TCGA-IN-A6RP-01 6 47576890 47576904 CTTCTAAAGCAAATA - CD2AP In_Frame_Del p.S556_T560del 0.33 TCGA-IN-A6RP-01 6 52142412 52142412 G C MCM3 Silent p.L363L 0.20 TCGA-IN-A6RP-01 6 52884073 52884073 C T ICK Missense_Mutation p.R148Q 0.12 deleterious(0.01) probably_damaging(1) TCGA-IN-A6RP-01 6 75890837 75890838 - A COL12A1 Frame_Shift_Ins p.S661Ffs*13 0.29 TCGA-IN-A6RP-01 7 112461939 112461939 G A C7orf60 Nonsense_Mutation p.R360* 0.12 TCGA-IN-A6RP-01 7 131908334 131908334 A G PLXNA4 Silent p.H683H 0.17 TCGA-IN-A6RP-01 7 141619580 141619580 G A OR9A4 Missense_Mutation p.R302Q 0.26 tolerated(0.06) benign(0.015) TCGA-IN-A6RP-01 7 142622604 142622604 C A TRPV5 Intron 0.24 TCGA-IN-A6RP-01 7 149523267 149523267 A G SSPO RNA 0.37 TCGA-IN-A6RP-01 7 15584446 15584446 G C AGMO Silent p.A120A 0.10 TCGA-IN-A6RP-01 7 4107518 4107518 C A SDK1 Missense_Mutation p.S987Y 0.14 deleterious(0) probably_damaging(0.996) TCGA-IN-A6RP-01 7 4794865 4794865 C A FOXK1 Intron 0.64 TCGA-IN-A6RP-01 7 7283232 7283232 C T C1GALT1 Silent p.L322L 0.13 TCGA-IN-A6RP-01 7 86509822 86509822 C A KIAA1324L Missense_Mutation p.V1019F 0.09 deleterious(0) probably_damaging(0.988) TCGA-IN-A6RP-01 7 92731760 92731760 A - SAMD9 Frame_Shift_Del p.F1217Lfs*32 0.12 TCGA-IN-A6RP-01 7 96651624 96651624 C T DLX5 Missense_Mutation p.R138H 0.10 deleterious(0) benign(0.185) TCGA-IN-A6RP-01 8 113933896 113933896 T G CSMD3 Missense_Mutation p.E531D 0.37 tolerated(1) possibly_damaging(0.557) TCGA-IN-A6RP-01 8 142366917 142366917 G A GPR20 3'UTR 0.29 TCGA-IN-A6RP-01 8 145622114 145622114 C A CPSF1 Nonsense_Mutation p.E875* 0.26 TCGA-IN-A6RP-01 8 35608158 35608158 C T UNC5D Missense_Mutation p.A665V 0.22 deleterious(0.03) benign(0.058) TCGA-IN-A6RP-01 8 53073985 53073985 C T ST18 Missense_Mutation p.R515H 0.08 tolerated(0.05) benign(0.02) TCGA-IN-A6RP-01 8 66647072 66647072 G A PDE7A Missense_Mutation p.A218V 0.32 deleterious(0) possibly_damaging(0.839) TCGA-IN-A6RP-01 8 70744273 70744273 G A SLCO5A1 Silent p.F212F 0.35 TCGA-IN-A6RP-01 8 72984022 72984022 G T TRPA1 Silent p.T64T 0.27 TCGA-IN-A6RP-01 8 82371457 82371457 G A FABP9 Silent p.I63I 0.09 TCGA-IN-A6RP-01 9 117553091 117553091 T G TNFSF15 Missense_Mutation p.N133H 0.07 deleterious(0.01) possibly_damaging(0.862) TCGA-IN-A6RP-01 9 119461125 119461125 A T TRIM32 Silent p.P368P 0.12 TCGA-IN-A6RP-01 9 125673768 125673768 G A ZBTB6 Missense_Mutation p.S195L 0.14 tolerated(0.26) benign(0.001) TCGA-IN-A6RP-01 9 12694213 12694213 C A TYRP1 Silent p.R73R 0.12 TCGA-IN-A6RP-01 9 131344970 131344970 C T SPTAN1 Intron 0.14 TCGA-IN-A6RP-01 9 140361819 140361819 C T PNPLA7 Missense_Mutation p.E997K 0.15 tolerated(0.05) benign(0.315) TCGA-IN-A6RP-01 9 14120531 14120531 G A NFIB Missense_Mutation p.P385S 0.30 deleterious(0.05) benign(0.393) TCGA-IN-A6RP-01 9 20866978 20866978 A T FOCAD Silent p.A719A 0.05 TCGA-IN-A6RP-01 9 27203033 27203033 C A TEK Missense_Mutation p.Q709K 0.43 tolerated(0.28) benign(0.063) TCGA-IN-A6RP-01 9 27950157 27950157 C T LINGO2 Silent p.R171R 0.07 TCGA-IN-A6RP-01 9 33442855 33442855 C G AQP3 Missense_Mutation p.D163H 0.08 deleterious(0) probably_damaging(1) TCGA-IN-A6RP-01 X 152914821 152914821 G A DUSP9 Missense_Mutation p.D170N 0.32 deleterious(0.03) possibly_damaging(0.597) TCGA-IN-A6RR-01 10 28233856 28233856 A G ARMC4 Silent p.C474C 0.44 TCGA-IN-A6RR-01 11 103175351 103175351 T G DYNC2H1 Missense_Mutation p.L3769V 0.42 benign(0.005) TCGA-IN-A6RR-01 11 10597940 10597940 G C MRVI1 Missense_Mutation p.A893G 0.71 tolerated(0.05) possibly_damaging(0.759) TCGA-IN-A6RR-01 11 110485314 110485314 A C ARHGAP20 Missense_Mutation p.F201V 0.32 tolerated(0.06) benign(0.336) TCGA-IN-A6RR-01 11 117306508 117306508 A C DSCAML1 Missense_Mutation p.I1636M 0.39 deleterious(0.04) probably_damaging(0.99) TCGA-IN-A6RR-01 11 119059814 119059814 G T PDZD3 Missense_Mutation p.R463M 0.49 tolerated(0.11) possibly_damaging(0.73) TCGA-IN-A6RR-01 11 124012335 124012335 C A VWA5A Missense_Mutation p.P637H 0.40 tolerated(0.3) benign(0) TCGA-IN-A6RR-01 11 14666457 14666457 C T PDE3B Missense_Mutation p.S279F 0.06 tolerated(0.06) benign(0.352) TCGA-IN-A6RR-01 11 1858548 1858548 C A SYT8 Missense_Mutation p.H365N 0.83 tolerated(1) benign(0.064) TCGA-IN-A6RR-01 11 49597890 49597890 G T RP11-707M1.1 RNA 0.48 TCGA-IN-A6RR-01 11 5537522 5537522 G A UBQLNL Silent p.I50I 0.71 TCGA-IN-A6RR-01 11 55405897 55405897 G T OR4P4 Nonsense_Mutation p.E22* 0.21 TCGA-IN-A6RR-01 11 55541174 55541174 G A OR5D13 Silent p.L87L 0.37 TCGA-IN-A6RR-01 11 55905014 55905014 A C OR8J3 Missense_Mutation p.F61V 0.41 deleterious(0) probably_damaging(0.998) TCGA-IN-A6RR-01 11 62433984 62433984 G A METTL12 Missense_Mutation p.G62R 0.34 deleterious(0.02) possibly_damaging(0.459) TCGA-IN-A6RR-01 11 65418190 65418190 G C SIPA1 3'UTR 0.47 TCGA-IN-A6RR-01 11 71239073 71239073 C T KRTAP5-7 3'UTR 0.40 TCGA-IN-A6RR-01 12 110813780 110813780 G A ANAPC7 Intron 0.40 TCGA-IN-A6RR-01 12 120784019 120784019 C T MSI1 Silent p.A322A 0.42 TCGA-IN-A6RR-01 12 123214216 123214216 A G HCAR1 Missense_Mutation p.V224A 0.27 tolerated(0.26) benign(0.028) TCGA-IN-A6RR-01 12 131438989 131438989 A G GPR133 5'UTR 0.30 TCGA-IN-A6RR-01 12 1890115 1890115 T C ADIPOR2 Silent p.Y237Y 0.37 TCGA-IN-A6RR-01 12 30784852 30784852 G A IPO8 Missense_Mutation p.A998V 0.34 deleterious(0.02) possibly_damaging(0.573) TCGA-IN-A6RR-01 12 32772670 32772670 C T FGD4 Silent p.S459S 0.07 TCGA-IN-A6RR-01 12 47173568 47173568 T C SLC38A4 Missense_Mutation p.N218S 0.12 tolerated(0.16) benign(0.103) TCGA-IN-A6RR-01 12 49428199 49428199 C T KMT2D Missense_Mutation p.V3501M 0.57 probably_damaging(0.986) TCGA-IN-A6RR-01 12 49729919 49729919 C T C1QL4 Silent p.A114A 0.47 TCGA-IN-A6RR-01 12 53084941 53084941 C A KRT77 3'UTR 0.30 TCGA-IN-A6RR-01 12 57919818 57919818 C TCT MBD6 Frame_Shift_Ins p.S356Ffs*22 0.46 TCGA-IN-A6RR-01 12 58015535 58015535 G A SLC26A10 Silent p.A206A 0.35 TCGA-IN-A6RR-01 12 86198853 86198853 C G RASSF9 Missense_Mutation p.S312T 0.03 tolerated(0.56) benign(0.002) TCGA-IN-A6RR-01 13 49772648 49772648 T G FNDC3A Silent p.T975T 0.26 TCGA-IN-A6RR-01 14 105413513 105413513 C A AHNAK2 Missense_Mutation p.D2759Y 0.34 probably_damaging(0.996) TCGA-IN-A6RR-01 14 20483297 20483297 G T OR4K14 Missense_Mutation p.T19N 0.32 tolerated(0.59) benign(0.001) TCGA-IN-A6RR-01 14 45650671 45650671 G A FANCM Missense_Mutation p.E1421K 0.28 tolerated(0.34) benign(0.311) TCGA-IN-A6RR-01 14 51224537 51224537 G A NIN Nonsense_Mutation p.Q1071* 0.51 TCGA-IN-A6RR-01 14 86088055 86088055 C T FLRT2 Missense_Mutation p.T66I 0.32 deleterious(0.05) benign(0.052) TCGA-IN-A6RR-01 14 95906003 95906003 C T SYNE3 Missense_Mutation p.R731K 0.41 tolerated(1) benign(0.004) TCGA-IN-A6RR-01 14 99183532 99183532 C T C14orf177 Missense_Mutation p.S100L 0.08 tolerated_low_confidence(1) benign(0) TCGA-IN-A6RR-01 15 23889763 23889763 G A MAGEL2 Missense_Mutation p.R440C 0.47 deleterious(0) possibly_damaging(0.877) TCGA-IN-A6RR-01 15 25925360 25925360 C T ATP10A Silent p.P1258P 0.31 TCGA-IN-A6RR-01 15 42145460 42145460 G A SPTBN5 Missense_Mutation p.A3389V 0.08 benign(0.019) TCGA-IN-A6RR-01 16 14340402 14340402 C T MKL2 Missense_Mutation p.R429C 0.77 deleterious(0) probably_damaging(1) TCGA-IN-A6RR-01 16 28856763 28856763 C T TUFM Missense_Mutation p.E96K 0.61 tolerated(0.15) possibly_damaging(0.576) TCGA-IN-A6RR-01 16 347814 347814 C T AXIN1 Nonsense_Mutation p.W564* 0.48 TCGA-IN-A6RR-01 16 3807913 3807913 C T CREBBP Missense_Mutation p.R1169H 0.67 unknown(0) TCGA-IN-A6RR-01 16 70917863 70917863 G A HYDIN Silent p.A3313A 0.67 TCGA-IN-A6RR-01 16 71683255 71683255 G C PHLPP2 Missense_Mutation p.D1170E 0.08 deleterious(0) probably_damaging(0.978) TCGA-IN-A6RR-01 16 85813172 85813172 C T EMC8 3'UTR 0.87 TCGA-IN-A6RR-01 17 18065952 18065952 C A MYO15A Missense_Mutation p.R3191S 0.44 unknown(0) TCGA-IN-A6RR-01 17 41606053 41606053 A G ETV4 Missense_Mutation p.L430S 0.29 deleterious(0) probably_damaging(0.999) TCGA-IN-A6RR-01 17 44590246 44590246 G A LRRC37A2 Silent p.P56P 0.25 TCGA-IN-A6RR-01 17 56772408 56772408 C T RAD51C Silent p.L88L 0.36 TCGA-IN-A6RR-01 17 72308268 72308268 C G DNAI2 Missense_Mutation p.L541V 0.24 tolerated(0.57) benign(0.006) TCGA-IN-A6RR-01 17 7578470 7578482 CGGGCGGGGGTGT - TP53 Frame_Shift_Del p.T150Afs*16 0.78 TCGA-IN-A6RR-01 18 21736169 21736169 T C CABYR Intron 0.05 TCGA-IN-A6RR-01 18 2732472 2732472 T G SMCHD1 Silent p.A1086A 0.36 TCGA-IN-A6RR-01 18 2890589 2890589 G T EMILIN2 Missense_Mutation p.R155M 0.52 deleterious(0.02) benign(0.232) TCGA-IN-A6RR-01 18 30950133 30950133 A C CCDC178 Missense_Mutation p.F77V 0.62 deleterious(0) probably_damaging(0.984) TCGA-IN-A6RR-01 18 40850383 40850383 C A SYT4 Missense_Mutation p.G401C 0.11 deleterious(0.02) possibly_damaging(0.805) TCGA-IN-A6RR-01 18 6244515 6244515 G A L3MBTL4 Missense_Mutation p.P98S 0.16 deleterious(0) probably_damaging(1) TCGA-IN-A6RR-01 19 1047344 1047344 G A ABCA7 Silent p.R678R 0.42 TCGA-IN-A6RR-01 19 11141427 11141427 G A SMARCA4 Missense_Mutation p.R1135Q 0.32 probably_damaging(0.999) TCGA-IN-A6RR-01 19 12461806 12461806 C T ZNF442 Missense_Mutation p.R198K 0.32 tolerated(0.54) benign(0.16) TCGA-IN-A6RR-01 19 14507981 14507981 G A CD97 Missense_Mutation p.G191S 0.32 deleterious(0.01) probably_damaging(1) TCGA-IN-A6RR-01 19 14626630 14626631 - CAG DNAJB1 3'UTR 0.45 TCGA-IN-A6RR-01 19 17025610 17025610 C G CPAMD8 Missense_Mutation p.V1262L 0.41 deleterious(0) probably_damaging(0.999) TCGA-IN-A6RR-01 19 22157258 22157258 C G ZNF208 Missense_Mutation p.R193T 0.44 tolerated(0.12) benign(0.086) TCGA-IN-A6RR-01 19 22364124 22364124 T G ZNF676 Missense_Mutation p.K132T 0.52 deleterious(0.04) probably_damaging(0.994) TCGA-IN-A6RR-01 19 22847578 22847578 A G ZNF492 Silent p.V369V 0.28 TCGA-IN-A6RR-01 19 3462875 3462875 C T NFIC 3'UTR 0.44 TCGA-IN-A6RR-01 19 37642910 37642910 C T ZNF585A Missense_Mutation p.E576K 0.07 deleterious(0.01) possibly_damaging(0.573) TCGA-IN-A6RR-01 19 40542132 40542132 G A ZNF780B Nonsense_Mutation p.Q212* 0.73 TCGA-IN-A6RR-01 19 4432024 4432024 G A CHAF1A Missense_Mutation p.G675R 0.38 deleterious(0.02) probably_damaging(0.973) TCGA-IN-A6RR-01 19 49253837 49253837 A G FUT1 Silent p.G234G 0.36 TCGA-IN-A6RR-01 19 53302130 53302130 T C ZNF28 3'UTR 0.70 TCGA-IN-A6RR-01 19 53754852 53754852 A G ZNF677 5'UTR 0.84 TCGA-IN-A6RR-01 19 58574826 58574826 C T ZNF135 Missense_Mutation p.P70L 0.32 tolerated(0.07) benign(0.002) TCGA-IN-A6RR-01 19 58862850 58862850 C T A1BG Missense_Mutation p.D273N 0.41 tolerated(0.23) benign(0.327) TCGA-IN-A6RR-01 1 109795735 109795735 C T CELSR2 Missense_Mutation p.R1012C 0.41 deleterious(0.05) benign(0.125) TCGA-IN-A6RR-01 1 114682277 114682277 G T SYT6 Silent p.R73R 0.28 TCGA-IN-A6RR-01 1 115829354 115829354 G A NGF Silent p.H21H 0.40 TCGA-IN-A6RR-01 1 142803892 142803892 G A RP11-423O2.5 RNA 0.36 TCGA-IN-A6RR-01 1 145290472 145290472 G T NOTCH2NL 3'Flank 0.05 TCGA-IN-A6RR-01 1 152331355 152331355 G A FLG2 Silent p.T2T 0.34 TCGA-IN-A6RR-01 1 158262019 158262019 G T CD1C Missense_Mutation p.L158F 0.38 deleterious(0) benign(0.004) TCGA-IN-A6RR-01 1 158389809 158389809 G T OR10K2 Missense_Mutation p.P283Q 0.30 deleterious(0) probably_damaging(1) TCGA-IN-A6RR-01 1 158435667 158435667 T G OR10K1 Missense_Mutation p.F106V 0.35 tolerated(0.57) probably_damaging(0.998) TCGA-IN-A6RR-01 1 161017384 161017384 G A ARHGAP30 3'UTR 0.29 TCGA-IN-A6RR-01 1 161022270 161022270 A G ARHGAP30 Silent p.H300H 0.45 TCGA-IN-A6RR-01 1 161092113 161092113 G A DEDD Missense_Mutation p.R261C 0.48 tolerated(0.08) possibly_damaging(0.908) TCGA-IN-A6RR-01 1 16736338 16736338 C T SPATA21 Silent p.R115R 0.07 TCGA-IN-A6RR-01 1 175049525 175049525 A C TNN Missense_Mutation p.E337D 0.28 tolerated(0.65) benign(0.003) TCGA-IN-A6RR-01 1 196302981 196302981 A C KCNT2 Missense_Mutation p.L665V 0.41 tolerated(1) benign(0.001) TCGA-IN-A6RR-01 1 201195101 201195101 G A IGFN1 Missense_Mutation p.E3546K 0.28 benign(0.237) TCGA-IN-A6RR-01 1 204199652 204199653 - T PLEKHA6 Frame_Shift_Ins p.I825Dfs*2 0.36 TCGA-IN-A6RR-01 1 211652456 211652456 G A RD3 Silent p.S170S 0.32 TCGA-IN-A6RR-01 1 215821930 215821930 G A USH2A Missense_Mutation p.A4841V 0.38 benign(0.219) TCGA-IN-A6RR-01 1 232942230 232942230 C A MAP10 Silent p.P487P 0.26 TCGA-IN-A6RR-01 1 237060403 237060403 G A MTR Silent p.K1232K 0.33 TCGA-IN-A6RR-01 1 240966237 240966237 A G RGS7 Silent p.S442S 0.36 TCGA-IN-A6RR-01 1 242035502 242035502 C T EXO1 Missense_Mutation p.T479M 0.07 tolerated(0.11) benign(0.028) TCGA-IN-A6RR-01 1 248112379 248112379 T C OR2L8 Missense_Mutation p.S74P 0.33 deleterious(0.01) probably_damaging(0.965) TCGA-IN-A6RR-01 1 27939398 27939398 G A FGR 3'UTR 0.43 TCGA-IN-A6RR-01 1 32557495 32557495 C T TMEM39B Silent p.L270L 0.34 TCGA-IN-A6RR-01 1 40131301 40131301 G A NT5C1A Missense_Mutation p.R109W 0.45 deleterious(0) probably_damaging(0.954) TCGA-IN-A6RR-01 1 42048426 42048426 T C HIVEP3 Silent p.T681T 0.40 TCGA-IN-A6RR-01 1 47650692 47650692 G A PDZK1IP1 Missense_Mutation p.S85L 0.50 tolerated(0.11) benign(0.014) TCGA-IN-A6RR-01 1 59812016 59812017 - G FGGY Frame_Shift_Ins p.V140Gfs*25 0.25 TCGA-IN-A6RR-01 1 6521564 6521564 G A TNFRSF25 Missense_Mutation p.A404V 0.37 deleterious(0) possibly_damaging(0.631) TCGA-IN-A6RR-01 1 75055178 75055178 A C C1orf173 Intron 0.51 TCGA-IN-A6RR-01 20 21492735 21492735 G A NKX2-2 Silent p.H216H 0.39 TCGA-IN-A6RR-01 20 2298127 2298127 G A TGM3 Missense_Mutation p.V327I 0.42 tolerated(0.38) benign(0.032) TCGA-IN-A6RR-01 20 30414687 30414687 C T MYLK2 Silent p.I390I 0.57 TCGA-IN-A6RR-01 20 36668908 36668908 C T RPRD1B Missense_Mutation p.P75S 0.38 tolerated(0.06) possibly_damaging(0.58) TCGA-IN-A6RR-01 20 37353700 37353700 C T SLC32A1 Silent p.H111H 0.35 TCGA-IN-A6RR-01 20 42165076 42165076 G A L3MBTL1 Silent p.K695K 0.29 TCGA-IN-A6RR-01 20 42935516 42935516 G A FITM2 Nonsense_Mutation p.R180* 0.44 TCGA-IN-A6RR-01 20 49508238 49508238 C A ADNP Missense_Mutation p.D1005Y 0.37 deleterious_low_confidence(0) possibly_damaging(0.75) TCGA-IN-A6RR-01 20 54824819 54824819 G A MC3R Missense_Mutation p.R307H 0.41 deleterious(0) probably_damaging(0.999) TCGA-IN-A6RR-01 20 57268891 57268891 G A NPEPL1 Silent p.V83V 0.34 TCGA-IN-A6RR-01 22 29182375 29182376 CT - CCDC117 3'UTR 0.31 TCGA-IN-A6RR-01 22 45312223 45312223 G A PHF21B Silent p.T167T 0.27 TCGA-IN-A6RR-01 22 50722306 50722306 G A PLXNB2 Silent p.L793L 0.29 TCGA-IN-A6RR-01 2 164468121 164468121 T G FIGN Missense_Mutation p.K74T 0.30 deleterious(0) probably_damaging(0.981) TCGA-IN-A6RR-01 2 170531264 170531264 T G CCDC173 Missense_Mutation p.S162R 0.47 deleterious(0) possibly_damaging(0.832) TCGA-IN-A6RR-01 2 179406037 179406037 G T TTN Silent p.S32589S 0.27 TCGA-IN-A6RR-01 2 179427899 179427899 C T TTN Missense_Mutation p.V27654I 0.50 TCGA-IN-A6RR-01 2 179584000 179584000 G A TTN Silent p.V8039V 0.03 TCGA-IN-A6RR-01 2 179606168 179606168 T C TTN Missense_Mutation p.K3931R 0.53 TCGA-IN-A6RR-01 2 201468739 201468739 G A AOX1 Splice_Site p.X197_splice 0.28 TCGA-IN-A6RR-01 2 207620043 207620043 C T MDH1B Silent p.K200K 0.35 TCGA-IN-A6RR-01 2 210517907 210517907 C A MAP2 Silent p.R5R 0.51 TCGA-IN-A6RR-01 2 241710439 241710439 G A KIF1A Silent p.H430H 0.56 TCGA-IN-A6RR-01 2 24236170 24236170 C T MFSD2B Missense_Mutation p.R38C 0.73 deleterious(0) possibly_damaging(0.88) TCGA-IN-A6RR-01 2 31604589 31604589 C T XDH Missense_Mutation p.V348I 0.71 tolerated(0.63) benign(0.004) TCGA-IN-A6RR-01 2 73477515 73477515 G A CCT7 Silent p.E384E 0.33 TCGA-IN-A6RR-01 2 77746764 77746764 T G LRRTM4 Missense_Mutation p.K77N 0.36 tolerated(0.19) possibly_damaging(0.816) TCGA-IN-A6RR-01 2 79312711 79312711 T G REG1B Missense_Mutation p.S114R 0.42 deleterious(0) possibly_damaging(0.836) TCGA-IN-A6RR-01 2 80530700 80530700 G T LRRTM1 Missense_Mutation p.A82D 0.37 tolerated(0.35) benign(0) TCGA-IN-A6RR-01 2 85843575 85843575 G A USP39 Missense_Mutation p.R86Q 0.59 tolerated(0.52) benign(0.002) TCGA-IN-A6RR-01 3 107798992 107798992 A G CD47 Silent p.S82S 0.43 TCGA-IN-A6RR-01 3 114057786 114057787 - T ZBTB20 3'UTR 0.27 TCGA-IN-A6RR-01 3 134873017 134873017 C T EPHB1 Missense_Mutation p.H441Y 0.38 deleterious(0.01) probably_damaging(0.968) TCGA-IN-A6RR-01 3 189526314 189526314 C T TP63 Missense_Mutation p.T193M 0.21 deleterious(0) probably_damaging(1) TCGA-IN-A6RR-01 3 38739984 38739984 C T SCN10A Missense_Mutation p.R1576H 0.06 deleterious(0.01) probably_damaging(0.992) TCGA-IN-A6RR-01 3 42906640 42906640 C A ACKR2 Missense_Mutation p.L216I 0.36 tolerated(0.65) benign(0.032) TCGA-IN-A6RR-01 3 46940163 46940163 G A PTH1R Missense_Mutation p.C217Y 0.16 deleterious(0) probably_damaging(0.991) TCGA-IN-A6RR-01 3 47087998 47087998 C A SETD2 Silent p.G2359G 0.41 TCGA-IN-A6RR-01 3 49153507 49153507 C T USP19 Missense_Mutation p.G482R 0.09 deleterious(0.01) probably_damaging(0.993) TCGA-IN-A6RR-01 3 49161697 49161697 C T LAMB2 Missense_Mutation p.R1117H 0.33 tolerated(0.19) benign(0.027) TCGA-IN-A6RR-01 3 52941197 52941197 G A SFMBT1 Missense_Mutation p.S740F 0.11 tolerated(0.06) probably_damaging(0.98) TCGA-IN-A6RR-01 3 54952462 54952462 C A LRTM1 3'UTR 0.38 TCGA-IN-A6RR-01 3 58111472 58111472 T C FLNB Splice_Site p.X1354_splice 0.08 TCGA-IN-A6RR-01 3 61547843 61547843 G T PTPRG 5'UTR 0.31 TCGA-IN-A6RR-01 3 89259055 89259055 A G EPHA3 Missense_Mutation p.T67A 0.27 deleterious(0.01) probably_damaging(0.991) TCGA-IN-A6RR-01 4 155510669 155510669 C T FGA Missense_Mutation p.V34M 0.06 deleterious(0.01) possibly_damaging(0.623) TCGA-IN-A6RR-01 4 1980601 1980601 C T WHSC1 Missense_Mutation p.R1355W 0.42 deleterious_low_confidence(0) unknown(0) TCGA-IN-A6RR-01 4 39269634 39269634 G A WDR19 Missense_Mutation p.R1094H 0.56 deleterious(0) possibly_damaging(0.632) TCGA-IN-A6RR-01 4 85638087 85638087 C T WDFY3 Missense_Mutation p.D2613N 0.46 deleterious(0) possibly_damaging(0.77) TCGA-IN-A6RR-01 4 88732877 88732877 G A IBSP Missense_Mutation p.V257I 0.65 tolerated(0.09) benign(0.131) TCGA-IN-A6RR-01 4 89304411 89304411 G A HERC6 Missense_Mutation p.V80M 0.27 tolerated(0.21) probably_damaging(0.98) TCGA-IN-A6RR-01 5 101592894 101592894 A C SLCO4C1 Missense_Mutation p.L465R 0.11 deleterious(0) possibly_damaging(0.797) TCGA-IN-A6RR-01 5 113698764 113698764 G A KCNN2 Missense_Mutation p.G98R 0.32 tolerated(0.52) unknown(0) TCGA-IN-A6RR-01 5 140734952 140734952 G A PCDHGA4 Missense_Mutation p.R62H 0.23 tolerated_low_confidence(0.15) benign(0.243) TCGA-IN-A6RR-01 5 149786487 149786487 G A CD74 Missense_Mutation p.P112L 0.47 deleterious(0) probably_damaging(1) TCGA-IN-A6RR-01 5 150889712 150889712 G A FAT2 Nonsense_Mutation p.Q3977* 0.27 TCGA-IN-A6RR-01 5 150924479 150924479 A T FAT2 Missense_Mutation p.F2070Y 0.40 probably_damaging(0.985) TCGA-IN-A6RR-01 5 151202370 151202370 C T GLRA1 Missense_Mutation p.R413Q 0.27 deleterious(0.02) benign(0.135) TCGA-IN-A6RR-01 5 161324161 161324161 C A GABRA1 Nonsense_Mutation p.Y368* 0.30 TCGA-IN-A6RR-01 5 176911090 176911090 G A PDLIM7 Silent p.G384G 0.24 TCGA-IN-A6RR-01 5 180661326 180661326 C T TRIM41 Missense_Mutation p.R482C 0.31 tolerated(0.14) benign(0.002) TCGA-IN-A6RR-01 5 21755708 21755708 A T CDH12 Missense_Mutation p.I626K 0.12 deleterious(0) probably_damaging(0.972) TCGA-IN-A6RR-01 5 21755928 21755928 G A CDH12 Nonsense_Mutation p.R553* 0.82 TCGA-IN-A6RR-01 5 21817188 21817188 T C CDH12 Missense_Mutation p.R290G 0.77 deleterious(0.01) possibly_damaging(0.879) TCGA-IN-A6RR-01 5 353860 353860 G A AHRR Silent p.G30G 0.08 TCGA-IN-A6RR-01 6 112388225 112388225 C T WISP3 Intron 0.51 TCGA-IN-A6RR-01 6 136512828 136512828 C A PDE7B Missense_Mutation p.N401K 0.28 tolerated(0.19) benign(0.201) TCGA-IN-A6RR-01 6 146351069 146351069 G A GRM1 Missense_Mutation p.R139Q 0.47 tolerated(0.63) possibly_damaging(0.605) TCGA-IN-A6RR-01 6 146720814 146720814 A C GRM1 Missense_Mutation p.K880T 0.31 tolerated(0.08) possibly_damaging(0.623) TCGA-IN-A6RR-01 6 160501307 160501308 TG - IGF2R Splice_Site p.X1945_splice 0.25 TCGA-IN-A6RR-01 6 41703940 41703940 C T TFEB 5'Flank 0.30 TCGA-IN-A6RR-01 6 55443799 55443799 G A HMGCLL1 Missense_Mutation p.R19W 0.44 tolerated_low_confidence(0.06) benign(0.008) TCGA-IN-A6RR-01 6 99282855 99282855 G A POU3F2 Missense_Mutation p.E36K 0.41 tolerated(0.08) benign(0.053) TCGA-IN-A6RR-01 7 100681604 100681604 C G MUC17 Missense_Mutation p.P2303A 0.03 unknown(0) TCGA-IN-A6RR-01 7 111377017 111377017 C T DOCK4 Missense_Mutation p.G1745E 0.31 tolerated(0.07) benign(0.04) TCGA-IN-A6RR-01 7 137075850 137075850 T C DGKI 3'UTR 0.30 TCGA-IN-A6RR-01 7 148288045 148288045 C T C7orf33 Missense_Mutation p.L10F 0.26 deleterious_low_confidence(0) possibly_damaging(0.765) TCGA-IN-A6RR-01 7 24738595 24738595 C T DFNA5 3'UTR 0.40 TCGA-IN-A6RR-01 7 29929023 29929023 A C WIPF3 Missense_Mutation p.S451R 0.36 deleterious_low_confidence(0) unknown(0) TCGA-IN-A6RR-01 7 50468308 50468308 C T IKZF1 Missense_Mutation p.R473C 0.50 deleterious(0.02) benign(0.133) TCGA-IN-A6RR-01 7 64863276 64863276 A G ZNF92 Silent p.Q83Q 0.40 TCGA-IN-A6RR-01 7 73635050 73635052 GGA - LAT2 In_Frame_Del p.E108del 0.57 TCGA-IN-A6RR-01 8 104924394 104924394 C A RIMS2 Silent p.G602G 0.49 TCGA-IN-A6RR-01 8 133175738 133175738 T C KCNQ3 Silent p.K413K 0.42 TCGA-IN-A6RR-01 8 134024163 134024163 C A TG Missense_Mutation p.Q2094K 0.42 tolerated(0.07) benign(0.062) TCGA-IN-A6RR-01 8 145722583 145722583 C T PPP1R16A Silent p.A2A 0.40 TCGA-IN-A6RR-01 8 2800106 2800106 C A CSMD1 Missense_Mutation p.D3475Y 0.53 possibly_damaging(0.861) TCGA-IN-A6RR-01 8 69552617 69552617 T C C8orf34 Missense_Mutation p.L371P 0.42 deleterious(0.01) probably_damaging(0.993) TCGA-IN-A6RR-01 9 103204414 103204414 G A MSANTD3 Missense_Mutation p.R65Q 0.45 deleterious(0.01) possibly_damaging(0.902) TCGA-IN-A6RR-01 9 112705558 112705558 C T PALM2 Silent p.D363D 0.36 TCGA-IN-A6RR-01 9 140242607 140242607 C A EXD3 Silent p.L638L 0.31 TCGA-IN-A6RR-01 9 17330727 17330727 A C CNTLN Missense_Mutation p.E480A 0.05 tolerated(0.51) benign(0.003) TCGA-IN-A6RR-01 9 66468632 66468632 T C RP11-262H14.1 RNA 0.20 TCGA-IN-A6RR-01 9 73442845 73442845 G A TRPM3 Silent p.N297N 0.31 TCGA-IN-A6RR-01 Y 3447740 3447740 C A TGIF2LY Missense_Mutation p.T152K 0.76 tolerated(0.46) benign(0) TCGA-IN-A6RS-01 10 105923979 105923979 C T WDR96 Missense_Mutation p.R1040H 0.21 deleterious(0) probably_damaging(0.972) TCGA-IN-A6RS-01 10 114046102 114046102 G A TECTB Missense_Mutation p.G146R 0.28 deleterious(0.01) probably_damaging(1) TCGA-IN-A6RS-01 10 128193333 128193333 G A C10orf90 Missense_Mutation p.R146C 0.25 deleterious(0) probably_damaging(0.982) TCGA-IN-A6RS-01 10 24762857 24762857 G A KIAA1217 Missense_Mutation p.G516D 0.27 deleterious(0.01) probably_damaging(1) TCGA-IN-A6RS-01 10 28903532 28903532 C G WAC Missense_Mutation p.Q492E 0.10 tolerated(0.06) benign(0.304) TCGA-IN-A6RS-01 10 51814449 51814449 C A RP11-324H6.5 RNA 0.24 TCGA-IN-A6RS-01 10 85992137 85992137 C T LRIT1 Missense_Mutation p.R473Q 0.42 tolerated(0.14) benign(0.358) TCGA-IN-A6RS-01 11 123848048 123848048 G T OR10S1 Nonsense_Mutation p.C117* 0.18 TCGA-IN-A6RS-01 11 45924221 45924221 G A MAPK8IP1 Silent p.P301P 0.19 TCGA-IN-A6RS-01 11 4594657 4594657 A C C11orf40 Missense_Mutation p.L63V 0.32 deleterious_low_confidence(0) possibly_damaging(0.567) TCGA-IN-A6RS-01 11 47159213 47159213 G A C11orf49 Missense_Mutation p.E100K 0.13 deleterious(0) probably_damaging(0.997) TCGA-IN-A6RS-01 11 47753078 47753078 G A FNBP4 Missense_Mutation p.S619L 0.22 deleterious(0) possibly_damaging(0.754) TCGA-IN-A6RS-01 11 57947184 57947184 G A OR9Q1 Missense_Mutation p.A90T 0.23 tolerated(0.32) benign(0.009) TCGA-IN-A6RS-01 11 63517614 63517614 G T RTN3 Missense_Mutation p.R894S 0.18 deleterious(0) probably_damaging(1) TCGA-IN-A6RS-01 11 76750677 76750677 C G B3GNT6 Missense_Mutation p.Q28E 0.22 tolerated(0.38) benign(0.026) TCGA-IN-A6RS-01 12 41333216 41333216 C T CNTN1 Silent p.C436C 0.36 TCGA-IN-A6RS-01 12 57389739 57389739 G A GPR182 Missense_Mutation p.G249E 0.33 tolerated(0.76) benign(0.014) TCGA-IN-A6RS-01 13 111806203 111806203 C T ARHGEF7 Intron 0.33 TCGA-IN-A6RS-01 13 114112188 114112188 C T DCUN1D2 3'UTR 0.40 TCGA-IN-A6RS-01 13 33096324 33096324 C T N4BP2L2 Missense_Mutation p.E61K 0.30 deleterious(0) possibly_damaging(0.541) TCGA-IN-A6RS-01 13 36445378 36445378 G C DCLK1 Missense_Mutation p.P308R 0.18 tolerated(0.06) possibly_damaging(0.904) TCGA-IN-A6RS-01 13 38171386 38171386 G T POSTN Silent p.G51G 0.18 TCGA-IN-A6RS-01 13 40175341 40175341 G A LHFP Silent p.L5L 0.23 TCGA-IN-A6RS-01 14 101200826 101200826 G A DLK1 Missense_Mutation p.A249T 0.23 tolerated(0.37) benign(0) TCGA-IN-A6RS-01 14 58838713 58838713 A T ARID4A 3'UTR 0.26 TCGA-IN-A6RS-01 15 50782048 50782048 C T USP8 Silent p.I647I 0.20 TCGA-IN-A6RS-01 15 64449050 64449050 C T PPIB Silent p.G134G 0.24 TCGA-IN-A6RS-01 15 83776446 83776446 C T TM6SF1 Missense_Mutation p.A5V 0.22 tolerated(0.25) benign(0.023) TCGA-IN-A6RS-01 15 99250838 99250838 C T IGF1R Missense_Mutation p.R48C 0.33 deleterious(0) possibly_damaging(0.729) TCGA-IN-A6RS-01 16 20492161 20492161 C A ACSM2A Nonsense_Mutation p.S476* 0.29 TCGA-IN-A6RS-01 16 2813929 2813929 G A SRRM2 Missense_Mutation p.E1134K 0.38 unknown(0) TCGA-IN-A6RS-01 16 28518121 28518121 C T IL27 Silent p.T4T 0.11 TCGA-IN-A6RS-01 16 28607142 28607142 C T SULT1A2 Missense_Mutation p.R37Q 0.22 tolerated(0.09) benign(0) TCGA-IN-A6RS-01 16 70432141 70432141 G A ST3GAL2 Missense_Mutation p.T98I 0.40 possibly_damaging(0.705) TCGA-IN-A6RS-01 16 77918583 77918583 C A VAT1L Missense_Mutation p.L321M 0.27 tolerated(0.05) probably_damaging(0.998) TCGA-IN-A6RS-01 16 88951475 88951475 G A CBFA2T3 Nonsense_Mutation p.R366* 0.39 TCGA-IN-A6RS-01 17 26960724 26960724 G A KIAA0100 Missense_Mutation p.P1103L 0.23 deleterious(0) probably_damaging(0.999) TCGA-IN-A6RS-01 17 3336884 3336884 G A OR1E2 Silent p.N84N 0.50 TCGA-IN-A6RS-01 17 38953381 38953381 G A KRT28 Silent p.F281F 0.06 TCGA-IN-A6RS-01 17 7578508 7578508 C T TP53 Missense_Mutation p.C141Y 0.29 deleterious(0) probably_damaging(1) TCGA-IN-A6RS-01 17 80020784 80020784 C G DUS1L Missense_Mutation p.D155H 0.12 deleterious(0.01) benign(0.201) TCGA-IN-A6RS-01 18 14752926 14752926 C T ANKRD30B Missense_Mutation p.A142V 0.27 deleterious(0) probably_damaging(0.998) TCGA-IN-A6RS-01 18 22805598 22805598 G A ZNF521 Missense_Mutation p.R762C 0.12 deleterious(0) probably_damaging(0.998) TCGA-IN-A6RS-01 18 64239434 64239434 C A CDH19 Missense_Mutation p.C3F 0.07 tolerated(0.07) benign(0.001) TCGA-IN-A6RS-01 19 12256126 12256126 C T ZNF625 Missense_Mutation p.E369K 0.10 tolerated_low_confidence(0.38) possibly_damaging(0.502) TCGA-IN-A6RS-01 19 14883285 14883285 G A EMR2 Missense_Mutation p.S75L 0.15 tolerated(0.66) benign(0.002) TCGA-IN-A6RS-01 19 15224565 15224565 C T SYDE1 Missense_Mutation p.R667W 0.22 deleterious(0) probably_damaging(0.977) TCGA-IN-A6RS-01 19 17322531 17322531 G A MYO9B Silent p.S2002S 0.34 TCGA-IN-A6RS-01 19 50453450 50453450 G T SIGLEC11 Missense_Mutation p.P625Q 0.60 tolerated(0.09) benign(0.069) TCGA-IN-A6RS-01 19 50784914 50784914 C T MYH14 Missense_Mutation p.R1452W 0.59 deleterious(0) probably_damaging(0.986) TCGA-IN-A6RS-01 1 11252386 11252386 A C ANGPTL7 Missense_Mutation p.K146Q 0.23 tolerated(0.22) possibly_damaging(0.745) TCGA-IN-A6RS-01 1 11561540 11561540 G A PTCHD2 Missense_Mutation p.R164H 0.24 tolerated_low_confidence(0.4) benign(0.004) TCGA-IN-A6RS-01 1 120466395 120466395 G A NOTCH2 Missense_Mutation p.T1575I 0.29 deleterious(0) probably_damaging(0.999) TCGA-IN-A6RS-01 1 154144721 154144721 A G TPM3 Intron 0.27 TCGA-IN-A6RS-01 1 155023299 155023299 C T DCST1 Silent p.S692S 0.25 TCGA-IN-A6RS-01 1 156834523 156834523 C T NTRK1 Silent p.T97T 0.30 TCGA-IN-A6RS-01 1 159021760 159021760 G T IFI16 Missense_Mutation p.V597L 0.25 tolerated(0.17) benign(0.096) TCGA-IN-A6RS-01 1 167815006 167815006 C T ADCY10 Silent p.Q934Q 0.16 TCGA-IN-A6RS-01 1 171621640 171621640 T C MYOC Missense_Mutation p.R38G 0.27 tolerated(0.06) benign(0.199) TCGA-IN-A6RS-01 1 201061119 201061119 C T CACNA1S Silent p.R174R 0.29 TCGA-IN-A6RS-01 1 203015039 203015039 G A PPFIA4 Missense_Mutation p.R17H 0.24 deleterious(0.01) probably_damaging(0.981) TCGA-IN-A6RS-01 1 203098170 203098170 C A ADORA1 Silent p.I67I 0.22 TCGA-IN-A6RS-01 1 217793122 217793122 C T GPATCH2 Intron 0.13 TCGA-IN-A6RS-01 1 228434276 228434276 C T OBSCN Missense_Mutation p.R1361W 0.25 possibly_damaging(0.761) TCGA-IN-A6RS-01 1 231386760 231386760 T C GNPAT Silent p.H44H 0.28 TCGA-IN-A6RS-01 1 248344102 248344102 A T OR2M2 Missense_Mutation p.K272M 0.30 tolerated(0.07) probably_damaging(0.987) TCGA-IN-A6RS-01 1 248436586 248436586 G A OR2T33 Silent p.C177C 0.24 TCGA-IN-A6RS-01 1 40236245 40236245 C T OXCT2 Missense_Mutation p.R228H 0.50 deleterious(0.05) probably_damaging(0.991) TCGA-IN-A6RS-01 1 62288652 62288652 A G INADL Silent p.E573E 0.21 TCGA-IN-A6RS-01 1 68914326 68914326 C T RPE65 Silent p.P25P 0.13 TCGA-IN-A6RS-01 1 77984335 77984335 C T AK5 Missense_Mutation p.R412C 0.21 tolerated(0.15) benign(0.013) TCGA-IN-A6RS-01 20 44469285 44469285 C G SNX21 Missense_Mutation p.T152S 0.09 deleterious(0.02) benign(0.284) TCGA-IN-A6RS-01 20 46292330 46292330 C T SULF2 Silent p.L698L 0.16 TCGA-IN-A6RS-01 20 744555 744555 G A SLC52A3 Silent p.P220P 0.17 TCGA-IN-A6RS-01 2 110927508 110927508 C A NPHP1 Nonsense_Mutation p.E133* 0.19 TCGA-IN-A6RS-01 2 141459802 141459802 C T LRP1B Silent p.E2070E 0.20 TCGA-IN-A6RS-01 2 1488479 1488479 G A TPO Missense_Mutation p.V484M 0.22 deleterious(0) probably_damaging(0.984) TCGA-IN-A6RS-01 2 15615939 15615939 G A NBAS Nonsense_Mutation p.R405* 0.31 TCGA-IN-A6RS-01 2 170606342 170606342 G A KLHL23 3'UTR 0.36 TCGA-IN-A6RS-01 2 179641601 179641601 G A TTN Missense_Mutation p.R1664W 0.15 TCGA-IN-A6RS-01 2 220136719 220136719 G A TUBA4B RNA 0.33 TCGA-IN-A6RS-01 2 234775302 234775302 C A MSL3P1 RNA 0.20 TCGA-IN-A6RS-01 2 241534522 241534522 G C CAPN10 Missense_Mutation p.G360A 0.10 tolerated(0.11) benign(0.044) TCGA-IN-A6RS-01 2 242065617 242065617 G A PASK Missense_Mutation p.R905W 0.21 tolerated(0.09) benign(0.034) TCGA-IN-A6RS-01 3 150176387 150176387 G A TSC22D2 Silent p.T769T 0.22 TCGA-IN-A6RS-01 3 165547596 165547596 C T BCHE Missense_Mutation p.R409K 0.32 tolerated(0.3) benign(0.001) TCGA-IN-A6RS-01 3 197273350 197273350 C T BDH1 5'UTR 0.24 TCGA-IN-A6RS-01 3 44497039 44497039 C G ZNF445 Translation_Start_Site p.M1? 0.28 deleterious_low_confidence(0) benign(0.019) TCGA-IN-A6RS-01 3 47042666 47042666 G A NBEAL2 Missense_Mutation p.R1494H 0.32 tolerated(0.06) probably_damaging(0.993) TCGA-IN-A6RS-01 3 97869146 97869146 A C OR5H14 Missense_Mutation p.K306T 0.23 deleterious(0.01) benign(0.365) TCGA-IN-A6RS-01 4 126411477 126411477 G T FAT4 Silent p.L4500L 0.11 TCGA-IN-A6RS-01 4 5690987 5690987 C T EVC2 Silent p.S201S 0.26 TCGA-IN-A6RS-01 4 71895077 71895077 G A DCK Silent p.E255E 0.19 TCGA-IN-A6RS-01 4 8082515 8082515 C T ABLIM2 Missense_Mutation p.G157S 0.09 deleterious(0) probably_damaging(1) TCGA-IN-A6RS-01 4 85675009 85675009 C T WDFY3 Silent p.E1860E 0.10 TCGA-IN-A6RS-01 4 89361121 89361123 AGA - HERC6 In_Frame_Del p.K885del 0.39 TCGA-IN-A6RS-01 5 114611690 114611690 C T CCDC112 Splice_Site p.X176_splice 0.22 TCGA-IN-A6RS-01 5 131822664 131822664 T C IRF1 Missense_Mutation p.T116A 0.27 tolerated(0.11) possibly_damaging(0.452) TCGA-IN-A6RS-01 5 13714645 13714645 C T DNAH5 Missense_Mutation p.V4332M 0.40 possibly_damaging(0.867) TCGA-IN-A6RS-01 5 140865602 140865602 C T PCDHGC4 Missense_Mutation p.R288C 0.30 tolerated(0.14) probably_damaging(0.964) TCGA-IN-A6RS-01 5 154396257 154396257 G T KIF4B Missense_Mutation p.K946N 0.24 deleterious(0.04) benign(0.339) TCGA-IN-A6RS-01 5 176304275 176304275 C T UNC5A Silent p.D487D 0.15 TCGA-IN-A6RS-01 5 180219380 180219380 G A MGAT1 Missense_Mutation p.R198W 0.15 possibly_damaging(0.67) TCGA-IN-A6RS-01 5 37142583 37142583 C A C5orf42 Splice_Site p.X2767_splice 0.38 TCGA-IN-A6RS-01 6 116442515 116442515 G A COL10A1 Missense_Mutation p.P255L 0.17 deleterious(0.03) unknown(0) TCGA-IN-A6RS-01 6 152688457 152688457 T G SYNE1 Missense_Mutation p.K3290Q 0.20 possibly_damaging(0.826) TCGA-IN-A6RS-01 6 26045665 26045665 C G HIST1H3C Silent p.R9R 0.31 TCGA-IN-A6RS-01 6 43592356 43592356 G A GTPBP2 Missense_Mutation p.R331C 0.12 deleterious(0) possibly_damaging(0.863) TCGA-IN-A6RS-01 7 107559676 107559676 C T DLD Missense_Mutation p.A501V 0.42 tolerated(0.09) probably_damaging(0.917) TCGA-IN-A6RS-01 7 119914847 119914847 C T KCND2 Missense_Mutation p.T54M 0.44 deleterious(0) probably_damaging(0.998) TCGA-IN-A6RS-01 7 126173280 126173280 G A GRM8 Missense_Mutation p.P719L 0.16 deleterious(0) probably_damaging(1) TCGA-IN-A6RS-01 7 134618000 134618000 C T CALD1 Silent p.Y160Y 0.26 TCGA-IN-A6RS-01 7 150713826 150713826 C T ATG9B Silent p.A790A 0.48 TCGA-IN-A6RS-01 7 151873903 151873904 - AA KMT2C Frame_Shift_Ins p.E2879Lfs*28 0.30 TCGA-IN-A6RS-01 7 42004772 42004772 G A GLI3 Missense_Mutation p.A1300V 0.24 tolerated_low_confidence(0.84) benign(0.001) TCGA-IN-A6RS-01 7 72879830 72879830 G A BAZ1B Silent p.L1004L 0.19 TCGA-IN-A6RS-01 7 75573194 75573194 C T POR Intron 0.44 TCGA-IN-A6RS-01 8 11177307 11177307 C A MTMR9 Silent p.I482I 0.11 TCGA-IN-A6RS-01 8 113697920 113697920 G C CSMD3 Missense_Mutation p.L733V 0.33 deleterious(0) probably_damaging(0.999) TCGA-IN-A6RS-01 8 21560457 21560457 C T GFRA2 Missense_Mutation p.D360N 0.51 deleterious(0.01) probably_damaging(0.94) TCGA-IN-A6RS-01 8 49637291 49637291 A G EFCAB1 3'UTR 0.18 TCGA-IN-A6RS-01 8 72975041 72975041 G A TRPA1 Missense_Mutation p.P267L 0.25 tolerated(1) benign(0) TCGA-IN-A6RS-01 8 77767842 77767842 C T ZFHX4 Silent p.N2895N 0.22 TCGA-IN-A6RS-01 9 101777743 101777743 C T COL15A1 Silent p.T466T 0.14 TCGA-IN-A6RS-01 9 119461502 119461502 G - TRIM32 Frame_Shift_Del p.W494Cfs*40 0.12 TCGA-IN-A6RS-01 9 130931346 130931346 C T CIZ1 Silent p.E760E 0.31 TCGA-IN-A6RS-01 9 18662027 18662027 C A ADAMTSL1 Silent p.P347P 0.31 TCGA-IN-A6RS-01 9 39103829 39103829 G A CNTNAP3 Silent p.D816D 0.23 TCGA-IN-A6RS-01 9 6012437 6012437 C T RANBP6 Silent p.E1057E 0.26 TCGA-IN-A6RS-01 9 91793365 91793365 C T SHC3 Missense_Mutation p.R4H 0.18 deleterious(0) probably_damaging(0.98) TCGA-IN-A6RS-01 X 107911636 107911636 C T COL4A5 Missense_Mutation p.P1231L 0.62 unknown(0) TCGA-IN-A6RS-01 X 128650354 128650354 G A SMARCA1 Missense_Mutation p.P128S 0.47 tolerated(0.24) benign(0.049) TCGA-IN-A6RS-01 X 3235383 3235383 C T MXRA5 Silent p.A2113A 0.50 TCGA-IN-A6RS-01 X 66905852 66905852 G A AR Missense_Mutation p.G590E 0.38 deleterious(0) probably_damaging(0.998) TCGA-IN-A6RS-01 X 79278612 79278612 G A TBX22 Missense_Mutation p.D77N 0.60 tolerated(0.35) benign(0.017) TCGA-IN-A7NR-01 10 14976434 14976434 G A DCLRE1C Missense_Mutation p.A208V 0.11 deleterious(0) probably_damaging(0.996) TCGA-IN-A7NR-01 10 85992477 85992477 C T LRIT1 Missense_Mutation p.A360T 0.12 tolerated(0.41) benign(0.003) TCGA-IN-A7NR-01 11 105962076 105962076 G A AASDHPPT Missense_Mutation p.V189I 0.04 tolerated(0.26) benign(0.002) TCGA-IN-A7NR-01 11 124310330 124310330 A C OR8B8 Missense_Mutation p.Y218D 0.06 deleterious_low_confidence(0) probably_damaging(1) TCGA-IN-A7NR-01 11 35453971 35453971 T C PAMR1 Missense_Mutation p.H716R 0.06 tolerated(0.55) benign(0.062) TCGA-IN-A7NR-01 11 5255609 5255609 C A HBD Missense_Mutation p.V19L 0.07 tolerated(0.17) benign(0.076) TCGA-IN-A7NR-01 11 5444225 5444225 C T OR51Q1 Silent p.R265R 0.12 TCGA-IN-A7NR-01 11 55735598 55735598 G A OR10AG1 Silent p.Y114Y 0.06 TCGA-IN-A7NR-01 11 55890352 55890352 C T OR8H3 Silent p.F168F 0.07 TCGA-IN-A7NR-01 11 55890391 55890391 T G OR8H3 Silent p.T181T 0.06 TCGA-IN-A7NR-01 11 89431636 89431636 A C FOLH1B RNA 0.07 TCGA-IN-A7NR-01 11 89531678 89531678 T G TRIM49 Missense_Mutation p.S327R 0.09 tolerated(0.18) benign(0.025) TCGA-IN-A7NR-01 11 89537506 89537506 T A TRIM49 Missense_Mutation p.Q44H 0.13 deleterious(0.01) possibly_damaging(0.617) TCGA-IN-A7NR-01 12 10999945 10999945 C T PRR4 Missense_Mutation p.R41K 0.12 tolerated_low_confidence(0.36) benign(0.003) TCGA-IN-A7NR-01 12 40717052 40717052 A C LRRK2 Missense_Mutation p.N1867T 0.17 tolerated(0.08) possibly_damaging(0.848) TCGA-IN-A7NR-01 12 55886148 55886148 T G OR6C68 5'Flank 0.19 TCGA-IN-A7NR-01 12 63544162 63544162 G A AVPR1A Missense_Mutation p.A152V 0.19 deleterious(0) probably_damaging(0.994) TCGA-IN-A7NR-01 12 80660278 80660278 T C OTOGL Missense_Mutation p.C749R 0.16 deleterious(0) probably_damaging(0.926) TCGA-IN-A7NR-01 13 41826831 41826831 C T MTRF1 Missense_Mutation p.C216Y 0.08 tolerated(1) benign(0.002) TCGA-IN-A7NR-01 13 61987146 61987146 T C PCDH20 Silent p.K362K 0.07 TCGA-IN-A7NR-01 14 20296294 20296294 T C OR4N2 Silent p.S229S 0.03 TCGA-IN-A7NR-01 14 44975139 44975139 A G FSCB Missense_Mutation p.L351P 0.11 tolerated(0.27) possibly_damaging(0.526) TCGA-IN-A7NR-01 14 45414994 45414994 A T KLHL28 Silent p.I46I 0.13 TCGA-IN-A7NR-01 15 53049637 53049637 T - ONECUT1 3'Flank 0.40 TCGA-IN-A7NR-01 15 81213427 81213427 C T KIAA1199 Silent p.A686A 0.10 TCGA-IN-A7NR-01 15 94913351 94913351 C T MCTP2 Silent p.V508V 0.19 TCGA-IN-A7NR-01 16 24268044 24268044 A G CACNG3 5'UTR 0.15 TCGA-IN-A7NR-01 16 30507808 30507808 A T ITGAL Missense_Mutation p.I585F 0.14 deleterious(0.01) possibly_damaging(0.589) TCGA-IN-A7NR-01 16 75579381 75579381 G A TMEM231 Missense_Mutation p.L180F 0.11 tolerated(1) benign(0.005) TCGA-IN-A7NR-01 17 21825473 21825473 C T FAM27L RNA 0.18 TCGA-IN-A7NR-01 17 2573540 2573540 C G PAFAH1B1 Missense_Mutation p.S161R 0.19 tolerated(0.13) benign(0.061) TCGA-IN-A7NR-01 17 32684539 32684539 A C CCL13 Missense_Mutation p.K41T 0.15 deleterious(0) possibly_damaging(0.845) TCGA-IN-A7NR-01 17 40557228 40557228 C T PTRF Missense_Mutation p.R217H 0.11 deleterious(0) probably_damaging(0.984) TCGA-IN-A7NR-01 17 41143701 41143701 C T RUNDC1 Missense_Mutation p.R604C 0.12 deleterious(0) probably_damaging(0.991) TCGA-IN-A7NR-01 17 73870953 73870953 G A TRIM47 Missense_Mutation p.R510C 0.06 tolerated(0.08) probably_damaging(1) TCGA-IN-A7NR-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.14 tolerated(0.11) benign(0.308) TCGA-IN-A7NR-01 18 31319532 31319532 T G ASXL3 Missense_Mutation p.L722V 0.10 benign(0.047) TCGA-IN-A7NR-01 19 11833297 11833297 T G ZNF823 Missense_Mutation p.E351A 0.16 tolerated(0.05) probably_damaging(0.999) TCGA-IN-A7NR-01 19 11942382 11942382 C T ZNF440 Missense_Mutation p.H131Y 0.09 tolerated(0.08) benign(0.256) TCGA-IN-A7NR-01 19 21990636 21990636 T G ZNF43 Missense_Mutation p.K735Q 0.09 deleterious(0.02) possibly_damaging(0.767) TCGA-IN-A7NR-01 19 39799005 39799005 C T LRFN1 Silent p.R528R 0.12 TCGA-IN-A7NR-01 19 42471441 42471441 G A ATP1A3 Silent p.Y1004Y 0.06 TCGA-IN-A7NR-01 19 42814019 42814019 C G PRR19 Missense_Mutation p.L95V 0.08 tolerated(0.09) possibly_damaging(0.721) TCGA-IN-A7NR-01 19 51215316 51215316 G A SHANK1 Missense_Mutation p.P283L 0.15 probably_damaging(0.991) TCGA-IN-A7NR-01 19 53015188 53015188 G T ZNF578 Missense_Mutation p.K518N 0.10 deleterious(0.01) benign(0.003) TCGA-IN-A7NR-01 19 53613100 53613100 T G ZNF415 Missense_Mutation p.E66D 0.06 deleterious(0.04) benign(0.002) TCGA-IN-A7NR-01 19 54742856 54742856 T A LILRA6 Missense_Mutation p.R473S 0.06 tolerated(0.08) benign(0.07) TCGA-IN-A7NR-01 19 55493653 55493653 G T NLRP2 Missense_Mutation p.S196I 0.09 tolerated(0.08) benign(0.085) TCGA-IN-A7NR-01 19 56303739 56303739 C T NLRP11 Missense_Mutation p.R814H 0.11 tolerated(0.62) benign(0) TCGA-IN-A7NR-01 19 9088383 9088383 G A MUC16 Silent p.G1144G 0.09 TCGA-IN-A7NR-01 19 9296767 9296767 T G OR7D2 Missense_Mutation p.S104A 0.06 deleterious_low_confidence(0.01) benign(0.017) TCGA-IN-A7NR-01 1 14108836 14108836 C T PRDM2 Missense_Mutation p.R1516W 0.13 unknown(0) TCGA-IN-A7NR-01 1 152732376 152732376 T G KPRP Silent p.T104T 0.15 TCGA-IN-A7NR-01 1 153122522 153122522 T G SPRR2G Missense_Mutation p.K22T 0.19 unknown(0) TCGA-IN-A7NR-01 1 157105421 157105421 C T ETV3 Silent p.L42L 0.05 TCGA-IN-A7NR-01 1 160318913 160318913 G T NCSTN Splice_Site p.X105_splice 0.07 TCGA-IN-A7NR-01 1 192628619 192628619 T G RGS13 Missense_Mutation p.L149R 0.15 deleterious(0) possibly_damaging(0.758) TCGA-IN-A7NR-01 1 19566335 19566335 T C EMC1 Missense_Mutation p.S311G 0.11 tolerated(0.27) benign(0.001) TCGA-IN-A7NR-01 1 242253408 242253408 A G PLD5 Silent p.N453N 0.11 TCGA-IN-A7NR-01 1 243675669 243675669 T G AKT3 Missense_Mutation p.E437D 0.07 tolerated(0.41) probably_damaging(0.992) TCGA-IN-A7NR-01 1 248129343 248129343 T G OR2AK2 Missense_Mutation p.L237R 0.08 deleterious(0) probably_damaging(0.992) TCGA-IN-A7NR-01 1 70501889 70501889 T G LRRC7 Missense_Mutation p.L656R 0.07 deleterious(0) probably_damaging(0.998) TCGA-IN-A7NR-01 1 85648219 85648219 G C SYDE2 Silent p.V702V 0.14 TCGA-IN-A7NR-01 20 30584665 30584665 G A XKR7 Missense_Mutation p.R382H 0.17 tolerated(0.51) benign(0.015) TCGA-IN-A7NR-01 20 45920611 45920611 C T ZMYND8 Missense_Mutation p.V197I 0.13 tolerated(0.05) benign(0.274) TCGA-IN-A7NR-01 20 47846808 47846808 G A DDX27 Missense_Mutation p.R349Q 0.15 deleterious(0) probably_damaging(1) TCGA-IN-A7NR-01 21 30419465 30419465 G A USP16 Missense_Mutation p.D612N 0.11 tolerated(0.06) probably_damaging(0.984) TCGA-IN-A7NR-01 2 116497452 116497452 C G DPP10 Missense_Mutation p.Q283E 0.05 tolerated(1) benign(0.001) TCGA-IN-A7NR-01 2 141130576 141130576 C T LRP1B Splice_Site p.X3590_splice 0.08 TCGA-IN-A7NR-01 2 198968559 198968559 T G PLCL1 Missense_Mutation p.F1002V 0.14 deleterious(0.02) benign(0.434) TCGA-IN-A7NR-01 2 210558094 210558094 A C MAP2 Missense_Mutation p.E400D 0.12 deleterious_low_confidence(0.05) benign(0.032) TCGA-IN-A7NR-01 2 210559324 210559324 A G MAP2 Silent p.L810L 0.11 TCGA-IN-A7NR-01 2 21245836 21245836 C T APOB Missense_Mutation p.A895T 0.09 possibly_damaging(0.774) TCGA-IN-A7NR-01 2 242082442 242082442 C T PASK Silent p.E2E 0.12 TCGA-IN-A7NR-01 3 137803004 137803004 C T DZIP1L Missense_Mutation p.R385H 0.08 tolerated(0.33) benign(0.004) TCGA-IN-A7NR-01 3 170906528 170906528 G A TNIK Missense_Mutation p.A201V 0.07 deleterious(0.04) unknown(0) TCGA-IN-A7NR-01 3 171427500 171427500 C A PLD1 Splice_Site p.X304_splice 0.21 TCGA-IN-A7NR-01 3 49695569 49695569 C T BSN Silent p.A2860A 0.11 TCGA-IN-A7NR-01 3 98600483 98600483 G T DCBLD2 Missense_Mutation p.R112S 0.05 tolerated(0.42) benign(0.258) TCGA-IN-A7NR-01 4 101108874 101108874 A G DDIT4L Missense_Mutation p.L181P 0.12 deleterious(0) probably_damaging(1) TCGA-IN-A7NR-01 4 122078382 122078382 G A TNIP3 Missense_Mutation p.T154M 0.10 tolerated(0.16) benign(0.031) TCGA-IN-A7NR-01 4 126328146 126328146 C T FAT4 Missense_Mutation p.R1807C 0.10 probably_damaging(1) TCGA-IN-A7NR-01 4 147561786 147561786 C T POU4F2 Silent p.I352I 0.09 TCGA-IN-A7NR-01 4 151511864 151511864 C G LRBA Splice_Site p.X2076_splice 0.10 TCGA-IN-A7NR-01 4 177649044 177649044 G A VEGFC Missense_Mutation p.A147V 0.06 deleterious(0.03) benign(0.072) TCGA-IN-A7NR-01 4 187194231 187194231 T G F11 Silent p.T75T 0.12 TCGA-IN-A7NR-01 4 41984321 41984321 T C DCAF4L1 Missense_Mutation p.V171A 0.09 tolerated(0.84) benign(0.003) TCGA-IN-A7NR-01 4 5746950 5746950 A C EVC Missense_Mutation p.K274T 0.05 deleterious(0) possibly_damaging(0.79) TCGA-IN-A7NR-01 4 78783988 78783988 T - MRPL1 5'UTR 0.12 TCGA-IN-A7NR-01 5 121799259 121799259 C A SNCAIP 3'UTR 0.16 TCGA-IN-A7NR-01 5 150901409 150901409 G A FAT2 Missense_Mutation p.A3582V 0.13 benign(0.003) TCGA-IN-A7NR-01 5 161324286 161324286 A T GABRA1 Missense_Mutation p.K410M 0.13 deleterious(0.02) probably_damaging(0.998) TCGA-IN-A7NR-01 5 171326957 171326957 G A FBXW11 Missense_Mutation p.T174I 0.05 deleterious(0.04) possibly_damaging(0.516) TCGA-IN-A7NR-01 5 32780832 32780832 C T NPR3 Silent p.I400I 0.21 TCGA-IN-A7NR-01 6 25726650 25726650 G A HIST1H2AA Missense_Mutation p.R36C 0.06 deleterious_low_confidence(0.03) benign(0.135) TCGA-IN-A7NR-01 6 27778127 27778127 G C HIST1H3H Silent p.A92A 0.07 TCGA-IN-A7NR-01 6 31832429 31832429 G A SLC44A4 Silent p.L671L 0.10 TCGA-IN-A7NR-01 6 31963812 31963812 C T C4A Missense_Mutation p.S1104F 0.09 deleterious(0.02) benign(0.071) TCGA-IN-A7NR-01 7 129815438 129815438 C T TMEM209 Missense_Mutation p.G420R 0.18 deleterious(0) benign(0.108) TCGA-IN-A7NR-01 7 141734541 141734541 A C MGAM Missense_Mutation p.K620T 0.06 deleterious(0.01) possibly_damaging(0.896) TCGA-IN-A7NR-01 7 56122109 56122109 C T CCT6A Silent p.A83A 0.18 TCGA-IN-A7NR-01 8 113569048 113569048 A G CSMD3 Missense_Mutation p.L1393P 0.09 deleterious(0) probably_damaging(0.997) TCGA-IN-A7NR-01 8 134145875 134145875 A G TG Missense_Mutation p.K2720R 0.19 deleterious(0.04) benign(0.046) TCGA-IN-A7NR-01 8 15517040 15517040 T G TUSC3 Missense_Mutation p.F151V 0.07 tolerated(0.08) benign(0.206) TCGA-IN-A7NR-01 8 77764365 77764365 G C ZFHX4 Missense_Mutation p.Q1736H 0.13 benign(0.387) TCGA-IN-A7NR-01 8 95705054 95705054 A T ESRP1 Missense_Mutation p.Q657L 0.12 deleterious(0.01) benign(0.109) TCGA-IN-A7NR-01 9 120475863 120475863 A C TLR4 Missense_Mutation p.N486T 0.11 deleterious(0) probably_damaging(0.939) TCGA-IN-A7NR-01 9 32467893 32467893 T A DDX58 Silent p.A684A 0.09 TCGA-IN-A7NR-01 9 95411847 95411847 C T IPPK Missense_Mutation p.C101Y 0.22 deleterious(0) probably_damaging(0.996) TCGA-IN-A7NR-01 9 97864003 97864003 G A FANCC Nonsense_Mutation p.R555* 0.10 TCGA-IN-A7NR-01 X 101818671 101818671 A C NXF4 RNA 0.07 TCGA-IN-A7NR-01 X 110406223 110406223 T C PAK3 Silent p.D219D 0.04 TCGA-IN-A7NR-01 X 118968953 118968953 C T UPF3B Missense_Mutation p.R447Q 0.06 deleterious(0.04) probably_damaging(0.921) TCGA-IN-A7NR-01 X 122551303 122551303 A C GRIA3 Missense_Mutation p.E517D 0.06 deleterious(0) possibly_damaging(0.459) TCGA-IN-A7NR-01 X 129139203 129139203 C T BCORL1 5'UTR 0.04 TCGA-IN-A7NT-01 10 121259626 121259626 C A RGS10 Nonstop_Mutation p.*182Lext*60 0.37 TCGA-IN-A7NT-01 10 55826610 55826610 A T PCDH15 Missense_Mutation p.D709E 0.37 deleterious(0) probably_damaging(0.912) TCGA-IN-A7NT-01 11 101347234 101347234 C G TRPC6 Missense_Mutation p.W514C 0.39 deleterious(0) probably_damaging(0.999) TCGA-IN-A7NT-01 11 11374128 11374128 T G CSNK2A3 Missense_Mutation p.E180A 0.29 deleterious(0) probably_damaging(0.958) TCGA-IN-A7NT-01 11 118958998 118958998 G A HMBS Missense_Mutation p.V23M 0.39 tolerated(0.05) possibly_damaging(0.627) TCGA-IN-A7NT-01 11 31823145 31823145 C A PAX6 Silent p.L121L 0.33 TCGA-IN-A7NT-01 11 55339956 55339956 T C OR4C16 Missense_Mutation p.V118A 0.29 tolerated(0.13) benign(0.011) TCGA-IN-A7NT-01 11 62292268 62292268 G A AHNAK Silent p.F3207F 0.15 TCGA-IN-A7NT-01 11 6478936 6478936 C T TRIM3 Missense_Mutation p.V169M 0.31 deleterious(0.01) benign(0.406) TCGA-IN-A7NT-01 11 831245 831245 G T EFCAB4A Nonsense_Mutation p.E270* 0.27 TCGA-IN-A7NT-01 12 106461337 106461337 C T NUAK1 Missense_Mutation p.R410H 0.29 deleterious(0.03) probably_damaging(0.997) TCGA-IN-A7NT-01 12 108961019 108961019 T C ISCU Silent p.L131L 0.26 TCGA-IN-A7NT-01 12 110238465 110238465 G A TRPV4 Missense_Mutation p.R271C 0.20 deleterious(0.03) benign(0.018) TCGA-IN-A7NT-01 12 20905343 20905343 A C SLCO1C1 Missense_Mutation p.K708T 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.727) TCGA-IN-A7NT-01 12 4763607 4763607 C T NDUFA9 Nonsense_Mutation p.R67* 0.14 TCGA-IN-A7NT-01 13 100617631 100617631 C T ZIC5 Silent p.%3D 0.20 TCGA-IN-A7NT-01 13 113556592 113556592 G A MCF2L Missense_Mutation p.E26K 0.48 tolerated_low_confidence(0.08) benign(0.266) TCGA-IN-A7NT-01 13 23904755 23904755 G A SACS Silent p.C4420C 0.37 TCGA-IN-A7NT-01 13 35758163 35758163 G A NBEA Missense_Mutation p.A1628T 0.33 tolerated_low_confidence(0.24) benign(0.01) TCGA-IN-A7NT-01 13 70371033 70371033 C T KLHL1 Missense_Mutation p.M492I 0.16 deleterious(0.02) probably_damaging(0.974) TCGA-IN-A7NT-01 14 23792231 23792233 GAG - PABPN1 In_Frame_Del p.E165del 0.22 TCGA-IN-A7NT-01 14 50583203 50583203 C T VCPKMT Missense_Mutation p.R23Q 0.39 tolerated(0.11) possibly_damaging(0.774) TCGA-IN-A7NT-01 14 56150932 56150932 C T KTN1 3'UTR 0.29 TCGA-IN-A7NT-01 14 92336447 92336447 G A FBLN5 3'UTR 0.30 TCGA-IN-A7NT-01 15 22382957 22382957 T C OR4N4 Missense_Mutation p.L162P 0.12 deleterious(0.02) probably_damaging(0.969) TCGA-IN-A7NT-01 15 25953238 25953238 T C ATP10A Silent p.K820K 0.36 TCGA-IN-A7NT-01 15 25953245 25953245 A C ATP10A Missense_Mutation p.L818R 0.35 deleterious(0) probably_damaging(0.956) TCGA-IN-A7NT-01 15 79178512 79178512 T A MORF4L1 Missense_Mutation p.V101E 0.24 deleterious(0) probably_damaging(0.939) TCGA-IN-A7NT-01 15 84527585 84527585 C T ADAMTSL3 Silent p.A265A 0.11 TCGA-IN-A7NT-01 16 2237059 2237059 G - CASKIN1 Frame_Shift_Del p.L284Cfs*15 0.09 TCGA-IN-A7NT-01 16 24183670 24183670 A G PRKCB Missense_Mutation p.E440G 0.27 deleterious(0) probably_damaging(0.998) TCGA-IN-A7NT-01 16 3021825 3021825 T G PAQR4 Missense_Mutation p.F233C 0.29 deleterious(0) probably_damaging(1) TCGA-IN-A7NT-01 16 31885251 31885251 C G ZNF267 5'UTR 0.26 TCGA-IN-A7NT-01 16 3433705 3433705 T C ZSCAN32 Missense_Mutation p.E202G 0.37 deleterious(0.02) benign(0) TCGA-IN-A7NT-01 16 3614337 3614337 C T NLRC3 Missense_Mutation p.V248I 0.33 tolerated(1) benign(0.004) TCGA-IN-A7NT-01 17 32614137 32614137 C T CCL11 Silent p.C33C 0.23 TCGA-IN-A7NT-01 17 51901630 51901630 T G KIF2B Silent p.T412T 0.39 TCGA-IN-A7NT-01 17 62856327 62856327 G A LRRC37A3 Missense_Mutation p.R1313C 0.28 deleterious(0.05) benign(0.297) TCGA-IN-A7NT-01 17 65717632 65717632 G T NOL11 Nonsense_Mutation p.E151* 0.23 TCGA-IN-A7NT-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.37 tolerated(0.11) benign(0.308) TCGA-IN-A7NT-01 17 7827809 7827809 C T KCNAB3 Missense_Mutation p.R212Q 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-IN-A7NT-01 17 78704480 78704480 G A RPTOR Missense_Mutation p.A210T 0.17 deleterious(0.01) benign(0.14) TCGA-IN-A7NT-01 18 31326040 31326040 T C ASXL3 Silent p.C2076C 0.57 TCGA-IN-A7NT-01 18 44560270 44560270 T C TCEB3B Missense_Mutation p.S456G 0.36 tolerated(0.31) probably_damaging(0.965) TCGA-IN-A7NT-01 18 63548147 63548147 C T CDH7 3'UTR 0.50 TCGA-IN-A7NT-01 19 11132513 11132513 C T SMARCA4 Missense_Mutation p.T910M 0.33 probably_damaging(0.99) TCGA-IN-A7NT-01 19 37975705 37975705 C A ZNF570 Missense_Mutation p.A394D 0.33 deleterious(0) possibly_damaging(0.658) TCGA-IN-A7NT-01 19 38135593 38135593 T C ZFP30 Silent p.E18E 0.23 TCGA-IN-A7NT-01 19 38230682 38230682 C G ZNF573 Missense_Mutation p.E237Q 0.24 tolerated(1) benign(0.225) TCGA-IN-A7NT-01 19 39336512 39336512 G A HNRNPL Missense_Mutation p.P202L 0.23 deleterious(0.03) probably_damaging(0.999) TCGA-IN-A7NT-01 19 41062937 41062937 G A SPTBN4 Silent p.Q1766Q 0.39 TCGA-IN-A7NT-01 19 42218979 42218980 - AGG CEACAM5 In_Frame_Ins p.Q172_D173insE 0.29 TCGA-IN-A7NT-01 19 49303258 49303258 G T BCAT2 Missense_Mutation p.P171T 0.27 deleterious(0) probably_damaging(0.999) TCGA-IN-A7NT-01 19 50333986 50333986 G A MED25 Missense_Mutation p.G315R 0.33 deleterious(0.01) probably_damaging(0.971) TCGA-IN-A7NT-01 1 161953551 161953551 G A OLFML2B Nonsense_Mutation p.Q723* 0.14 TCGA-IN-A7NT-01 1 169338789 169338789 G A BLZF1 Splice_Site p.X10_splice 0.25 TCGA-IN-A7NT-01 1 176740272 176740272 A T PAPPA2 Missense_Mutation p.K1557N 0.11 tolerated(0.2) benign(0.202) TCGA-IN-A7NT-01 1 183255852 183255852 G A NMNAT2 Silent p.N131N 0.18 TCGA-IN-A7NT-01 1 220330778 220330778 G A RAB3GAP2 Missense_Mutation p.A1130V 0.38 tolerated(1) benign(0.049) TCGA-IN-A7NT-01 1 236157045 236157045 C T NID1 Silent p.A885A 0.40 TCGA-IN-A7NT-01 1 24392333 24392333 C T MYOM3 Intron 0.20 TCGA-IN-A7NT-01 1 27240034 27240034 C T NR0B2 Missense_Mutation p.G133D 0.12 tolerated(0.27) benign(0.008) TCGA-IN-A7NT-01 1 39893908 39893908 C T MACF1 Silent p.F3522F 0.19 TCGA-IN-A7NT-01 1 47746465 47746465 G A STIL Silent p.P555P 0.16 TCGA-IN-A7NT-01 20 37353264 37353264 G A SLC32A1 5'UTR 0.38 TCGA-IN-A7NT-01 20 57429166 57429166 C A GNAS Silent p.G282G 0.39 TCGA-IN-A7NT-01 21 22710853 22710853 A G NCAM2 Missense_Mutation p.K348R 0.42 deleterious(0) benign(0.251) TCGA-IN-A7NT-01 22 17600895 17600895 C T CECR6 Missense_Mutation p.A375T 0.26 tolerated(0.21) benign(0.061) TCGA-IN-A7NT-01 22 21384181 21384181 G A SLC7A4 Missense_Mutation p.A481V 0.19 deleterious(0.02) benign(0.223) TCGA-IN-A7NT-01 22 28193444 28193444 C T MN1 Missense_Mutation p.G1030S 0.32 benign(0.012) TCGA-IN-A7NT-01 22 45755829 45755829 C A SMC1B Silent p.G906G 0.28 TCGA-IN-A7NT-01 22 50962558 50962558 G A SCO2 Missense_Mutation p.R95C 0.40 deleterious(0.01) probably_damaging(0.996) TCGA-IN-A7NT-01 2 108488005 108488005 T C RGPD4 Missense_Mutation p.L1182P 0.36 deleterious(0) probably_damaging(0.995) TCGA-IN-A7NT-01 2 136111101 136111101 G A ZRANB3 Missense_Mutation p.P93L 0.19 tolerated(0.07) benign(0.151) TCGA-IN-A7NT-01 2 141598520 141598520 T G LRP1B Missense_Mutation p.K1694T 0.29 benign(0.403) TCGA-IN-A7NT-01 2 197199185 197199185 G A HECW2 Missense_Mutation p.T153M 0.36 deleterious(0) possibly_damaging(0.793) TCGA-IN-A7NT-01 2 209185082 209185082 A C PIKFYVE Missense_Mutation p.Q730P 0.26 deleterious(0) probably_damaging(0.988) TCGA-IN-A7NT-01 2 217142483 217142483 A C MARCH4 Silent p.T259T 0.21 TCGA-IN-A7NT-01 2 45169861 45169861 C T SIX3 Silent p.G206G 0.11 TCGA-IN-A7NT-01 2 48701835 48701835 T C PPP1R21 Missense_Mutation p.C368R 0.24 deleterious(0.01) possibly_damaging(0.821) TCGA-IN-A7NT-01 2 73800203 73800203 T G ALMS1 Silent p.T3732T 0.29 TCGA-IN-A7NT-01 2 90139138 90139138 C A IGKV1D-16 Missense_Mutation p.L12I 0.17 tolerated(0.09) probably_damaging(0.955) TCGA-IN-A7NT-01 2 95953961 95953961 G C PROM2 Silent p.V749V 0.25 TCGA-IN-A7NT-01 3 10283810 10283810 T G IRAK2 Silent p.T592T 0.51 TCGA-IN-A7NT-01 3 167217995 167217995 T C WDR49 Missense_Mutation p.K641E 0.27 tolerated(1) benign(0) TCGA-IN-A7NT-01 3 48573837 48573837 G A PFKFB4 Missense_Mutation p.A231V 0.52 benign(0.002) TCGA-IN-A7NT-01 3 49700578 49700578 G A BSN Missense_Mutation p.G3663R 0.47 unknown(0) TCGA-IN-A7NT-01 3 62356908 62356908 T C FEZF2 Silent p.K368K 0.46 TCGA-IN-A7NT-01 3 77623728 77623728 T C ROBO2 Missense_Mutation p.W700R 0.45 deleterious(0) possibly_damaging(0.878) TCGA-IN-A7NT-01 3 78735027 78735027 C A ROBO1 Missense_Mutation p.R404L 0.60 deleterious(0) probably_damaging(0.997) TCGA-IN-A7NT-01 4 126389761 126389761 T G FAT4 Missense_Mutation p.I3998M 0.44 benign(0.006) TCGA-IN-A7NT-01 4 46930377 46930377 A C GABRA4 Silent p.P510P 0.20 TCGA-IN-A7NT-01 4 47427852 47427852 C T GABRB1 Silent p.Y414Y 0.29 TCGA-IN-A7NT-01 4 48529989 48529989 G A FRYL Missense_Mutation p.S2380L 0.13 deleterious(0) probably_damaging(0.992) TCGA-IN-A7NT-01 4 71648896 71648896 G A RUFY3 Missense_Mutation p.R328Q 0.30 tolerated(0.33) possibly_damaging(0.861) TCGA-IN-A7NT-01 4 73205329 73205329 C T ADAMTS3 Missense_Mutation p.R248H 0.30 deleterious(0) probably_damaging(0.973) TCGA-IN-A7NT-01 4 74442429 74442429 C G RASSF6 Missense_Mutation p.K279N 0.09 tolerated(0.51) benign(0.05) TCGA-IN-A7NT-01 5 137451430 137451430 C T NME5 Silent p.L193L 0.47 TCGA-IN-A7NT-01 5 140774033 140774033 C A PCDHGA8 Missense_Mutation p.F551L 0.54 tolerated_low_confidence(0.05) benign(0.396) TCGA-IN-A7NT-01 5 42719133 42719133 G A GHR Silent p.K508K 0.46 TCGA-IN-A7NT-01 6 15501508 15501508 C T JARID2 Silent p.S772S 0.55 TCGA-IN-A7NT-01 6 24596276 24596276 G A KIAA0319 Missense_Mutation p.T209M 0.35 tolerated(0.1) benign(0.191) TCGA-IN-A7NT-01 6 27222906 27222906 G A PRSS16 Missense_Mutation p.R491H 0.53 deleterious(0) probably_damaging(0.947) TCGA-IN-A7NT-01 6 27925182 27925182 T C OR2B6 Missense_Mutation p.L55P 0.14 deleterious(0) probably_damaging(0.999) TCGA-IN-A7NT-01 6 3298380 3298380 G A SLC22A23 Silent p.H385H 0.14 TCGA-IN-A7NT-01 6 42036293 42036293 C T TAF8 Missense_Mutation p.S243L 0.15 tolerated(0.17) benign(0.004) TCGA-IN-A7NT-01 6 43034801 43034801 T A KLC4 Missense_Mutation p.L305M 0.15 deleterious(0) benign(0.091) TCGA-IN-A7NT-01 6 74138522 74138522 C A MB21D1 Missense_Mutation p.R376L 0.11 deleterious(0) probably_damaging(0.997) TCGA-IN-A7NT-01 6 8097577 8097577 C T EEF1E1 Missense_Mutation p.V71I 0.09 tolerated(0.28) benign(0.043) TCGA-IN-A7NT-01 7 1589551 1589551 C T TMEM184A Missense_Mutation p.V195I 0.20 tolerated(0.98) benign(0.006) TCGA-IN-A7NT-01 7 44185220 44185220 G A GCK Missense_Mutation p.R378C 0.28 deleterious(0) probably_damaging(1) TCGA-IN-A7NT-01 7 72985118 72985118 G A TBL2 Missense_Mutation p.H355Y 0.14 tolerated(1) benign(0.001) TCGA-IN-A7NT-01 7 82595506 82595506 G C PCLO Missense_Mutation p.L1200V 0.20 unknown(0) TCGA-IN-A7NT-01 7 84751204 84751204 T G SEMA3D Missense_Mutation p.N2H 0.15 deleterious_low_confidence(0.01) benign(0.066) TCGA-IN-A7NT-01 7 84751205 84751205 C G SEMA3D Translation_Start_Site p.M1? 0.17 deleterious_low_confidence(0) possibly_damaging(0.885) TCGA-IN-A7NT-01 7 86556173 86556173 A C KIAA1324L Silent p.A383A 0.16 TCGA-IN-A7NT-01 7 87195492 87195492 G T ABCB1 Missense_Mutation p.T199K 0.19 deleterious(0) possibly_damaging(0.537) TCGA-IN-A7NT-01 7 92761763 92761764 - T SAMD9L Frame_Shift_Ins p.N1174Kfs*3 0.20 TCGA-IN-A7NT-01 8 123965100 123965100 G C ZHX2 Missense_Mutation p.Q450H 0.23 deleterious(0) probably_damaging(0.995) TCGA-IN-A7NT-01 8 48711778 48711778 A G PRKDC Silent p.N3429N 0.30 TCGA-IN-A7NT-01 8 72964909 72964909 T C TRPA1 Missense_Mutation p.Q579R 0.29 tolerated(0.36) benign(0.118) TCGA-IN-A7NT-01 8 75898349 75898349 G T CRISPLD1 Missense_Mutation p.D43Y 0.26 deleterious(0.01) possibly_damaging(0.759) TCGA-IN-A7NT-01 8 77775831 77775831 A G ZFHX4 Missense_Mutation p.E3294G 0.26 probably_damaging(0.986) TCGA-IN-A7NT-01 9 112705851 112705851 T G PALM2 3'Flank 0.44 TCGA-IN-A7NT-01 9 116151366 116151366 G A ALAD Silent p.A274A 0.38 TCGA-IN-A7NT-01 9 21974760 21974760 C G CDKN2A Missense_Mutation p.G23R 0.47 deleterious(0) possibly_damaging(0.506) TCGA-IN-A7NT-01 X 118968703 118968703 T C UPF3B 3'UTR 0.25 TCGA-IN-A7NT-01 X 129546642 129546642 G A RBMX2 Silent p.K263K 0.38 TCGA-IN-A7NT-01 X 147009864 147009864 G C FMR1 Missense_Mutation p.E75Q 0.11 deleterious(0) probably_damaging(0.916) TCGA-IN-A7NT-01 X 150789469 150789469 A C PASD1 Missense_Mutation p.K92T 0.56 deleterious(0) probably_damaging(0.999) TCGA-IN-A7NT-01 X 152482527 152482527 C A MAGEA1 Missense_Mutation p.A162S 0.25 deleterious(0.01) possibly_damaging(0.464) TCGA-IN-A7NT-01 X 153692762 153692762 C T PLXNA3 Missense_Mutation p.R616W 0.15 deleterious(0.05) benign(0.001) TCGA-IN-A7NT-01 X 18209166 18209166 C A BEND2 Missense_Mutation p.D415Y 0.25 deleterious(0.01) probably_damaging(0.979) TCGA-IN-A7NT-01 X 20028955 20028955 G A MAP7D2 Missense_Mutation p.P763L 0.26 deleterious(0) unknown(0) TCGA-IN-A7NT-01 X 31525440 31525440 T G DMD Missense_Mutation p.N2783T 0.18 possibly_damaging(0.607) TCGA-IN-A7NT-01 X 50052855 50052855 T A CCNB3 Silent p.S562S 0.28 TCGA-IN-A7NT-01 X 55039967 55039967 A G ALAS2 Silent p.L518L 0.12 TCGA-IN-A7NT-01 X 56590796 56590796 T G UBQLN2 Missense_Mutation p.F164V 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-IN-A7NT-01 X 67502908 67502908 C A OPHN1 Missense_Mutation p.R101M 0.17 deleterious(0) possibly_damaging(0.873) TCGA-IN-A7NT-01 X 69849512 69849512 C T TEX11 Silent p.E534E 0.37 TCGA-IN-A7NU-01 10 17875705 17875705 C A MRC1L1 Missense_Mutation p.D223E 0.43 probably_damaging(0.911) TCGA-IN-A7NU-01 11 108043459 108043459 G C NPAT Missense_Mutation p.S751C 0.11 deleterious(0) probably_damaging(0.997) TCGA-IN-A7NU-01 11 11470348 11470348 G A GALNT18 Missense_Mutation p.A124V 0.24 tolerated(0.93) benign(0.039) TCGA-IN-A7NU-01 11 123900553 123900553 C T OR10G8 Missense_Mutation p.T75M 0.23 deleterious(0) probably_damaging(0.993) TCGA-IN-A7NU-01 11 133790154 133790154 C T IGSF9B Missense_Mutation p.G1156R 0.13 tolerated_low_confidence(0.07) benign(0.26) TCGA-IN-A7NU-01 11 14880746 14880746 C T PDE3B Missense_Mutation p.T893M 0.29 deleterious(0) probably_damaging(1) TCGA-IN-A7NU-01 11 17323309 17323309 G T NUCB2 Nonsense_Mutation p.E91* 0.09 TCGA-IN-A7NU-01 11 46920143 46920143 C T LRP4 Silent p.A254A 0.21 TCGA-IN-A7NU-01 11 55062998 55062998 A C TRIM51HP RNA 0.25 TCGA-IN-A7NU-01 11 6532527 6532527 G C DNHD1 Silent p.V420V 0.24 TCGA-IN-A7NU-01 11 68305266 68305266 T C PPP6R3 Missense_Mutation p.I45T 0.26 deleterious(0.02) possibly_damaging(0.786) TCGA-IN-A7NU-01 12 113319638 113319638 C T RPH3A Missense_Mutation p.P438L 0.25 deleterious(0) probably_damaging(0.997) TCGA-IN-A7NU-01 12 121712150 121712150 C T CAMKK2 Silent p.P60P 0.12 TCGA-IN-A7NU-01 12 130649218 130649218 G A FZD10 Silent p.S577S 0.23 TCGA-IN-A7NU-01 12 46254692 46254692 C - ARID2 Frame_Shift_Del p.P1628Lfs*73 0.20 TCGA-IN-A7NU-01 12 81528749 81528749 C A ACSS3 Missense_Mutation p.S204Y 0.23 deleterious(0) probably_damaging(0.997) TCGA-IN-A7NU-01 12 81624875 81624875 G A ACSS3 Silent p.K518K 0.16 TCGA-IN-A7NU-01 13 110831318 110831318 G A COL4A1 Missense_Mutation p.P804S 0.33 benign(0.036) TCGA-IN-A7NU-01 13 111092162 111092162 A G COL4A2 Silent p.K313K 0.05 TCGA-IN-A7NU-01 13 23894857 23894857 G A SGCG Silent p.A220A 0.31 TCGA-IN-A7NU-01 13 33332222 33332222 T A PDS5B Intron 0.24 TCGA-IN-A7NU-01 13 58208918 58208918 G T PCDH17 Missense_Mutation p.E746D 0.25 tolerated(0.26) benign(0.008) TCGA-IN-A7NU-01 14 101491392 101491392 G A MIR380 RNA 0.35 TCGA-IN-A7NU-01 14 65009479 65009479 G A HSPA2 Missense_Mutation p.V638M 0.38 deleterious_low_confidence(0.05) possibly_damaging(0.608) TCGA-IN-A7NU-01 15 33954940 33954940 G A RYR3 Missense_Mutation p.V1737M 0.13 probably_damaging(0.965) TCGA-IN-A7NU-01 15 58834130 58834130 G T LIPC Silent p.V140V 0.25 TCGA-IN-A7NU-01 16 21261886 21261886 C T ANKS4B Silent p.D333D 0.16 TCGA-IN-A7NU-01 16 30387833 30387833 G A MYLPF Missense_Mutation p.G88R 0.15 deleterious(0.01) probably_damaging(1) TCGA-IN-A7NU-01 16 31926807 31926808 TG - ZNF267 Frame_Shift_Del p.C413Wfs*7 0.16 TCGA-IN-A7NU-01 16 49671252 49671252 C T ZNF423 Missense_Mutation p.S604N 0.11 deleterious(0.02) probably_damaging(0.96) TCGA-IN-A7NU-01 16 54145865 54145865 C T FTO 3'UTR 0.12 TCGA-IN-A7NU-01 16 65005506 65005506 T C CDH11 Missense_Mutation p.N540D 0.21 deleterious(0.01) benign(0.081) TCGA-IN-A7NU-01 16 80646598 80646598 C T CDYL2 Silent p.T381T 0.19 TCGA-IN-A7NU-01 17 15973740 15973740 G A NCOR1 Missense_Mutation p.P1418S 0.16 benign(0.003) TCGA-IN-A7NU-01 17 30621406 30621406 C T RHBDL3 Missense_Mutation p.P205S 0.16 deleterious(0) probably_damaging(1) TCGA-IN-A7NU-01 17 3119043 3119043 G T OR1A1 Silent p.L43L 0.31 TCGA-IN-A7NU-01 17 34205615 34205615 A G CCL5 Silent p.F35F 0.18 TCGA-IN-A7NU-01 17 38520080 38520080 G A CTD-2267D19.3 Missense_Mutation p.A298T 0.21 deleterious_low_confidence(0) unknown(0) TCGA-IN-A7NU-01 17 47583836 47583836 C T NGFR Silent p.C128C 0.37 TCGA-IN-A7NU-01 17 73887222 73887222 C T TRIM65 Missense_Mutation p.G398S 0.15 deleterious(0) probably_damaging(1) TCGA-IN-A7NU-01 17 7578479 7578479 G T TP53 Missense_Mutation p.P151T 0.37 deleterious(0) probably_damaging(0.983) TCGA-IN-A7NU-01 17 79983272 79983272 G A LRRC45 Missense_Mutation p.V184I 0.18 tolerated(1) benign(0.001) TCGA-IN-A7NU-01 17 80391675 80391675 C T HEXDC Missense_Mutation p.R142W 0.17 tolerated(1) benign(0.003) TCGA-IN-A7NU-01 19 41712469 41712469 G A CYP2S1 3'UTR 0.40 TCGA-IN-A7NU-01 19 53613110 53613110 T A ZNF415 Missense_Mutation p.N63I 0.50 deleterious(0.02) benign(0.018) TCGA-IN-A7NU-01 1 12941915 12941915 A G PRAMEF4 Missense_Mutation p.V212A 0.21 deleterious(0.01) benign(0.034) TCGA-IN-A7NU-01 1 145558905 145558905 G A ANKRD35 Missense_Mutation p.R175Q 0.10 tolerated(0.06) possibly_damaging(0.857) TCGA-IN-A7NU-01 1 152275530 152275530 T C FLG Missense_Mutation p.I3944M 0.18 unknown(0) TCGA-IN-A7NU-01 1 158325143 158325143 T G CD1E Missense_Mutation p.F137V 0.34 deleterious(0) benign(0.292) TCGA-IN-A7NU-01 1 186158899 186158899 A C HMCN1 Missense_Mutation p.E5599D 0.36 probably_damaging(0.931) TCGA-IN-A7NU-01 1 186340108 186340108 G A TPR Silent p.A108A 0.13 TCGA-IN-A7NU-01 1 211652433 211652433 G A RD3 Missense_Mutation p.P178L 0.25 tolerated(0.21) benign(0.031) TCGA-IN-A7NU-01 1 215931934 215931934 T A USH2A Intron 0.17 TCGA-IN-A7NU-01 1 226352631 226352631 C T ACBD3 Splice_Site p.X143_splice 0.32 TCGA-IN-A7NU-01 1 248309230 248309230 C T OR2M5 Missense_Mutation p.R261W 0.18 deleterious(0.04) benign(0.007) TCGA-IN-A7NU-01 1 26689617 26689617 C T ZNF683 Missense_Mutation p.R348H 0.18 deleterious(0) probably_damaging(0.999) TCGA-IN-A7NU-01 1 28293487 28293487 G A XKR8 Missense_Mutation p.V322M 0.19 tolerated(0.07) benign(0.152) TCGA-IN-A7NU-01 1 38341336 38341336 C G INPP5B Missense_Mutation p.R577P 0.20 deleterious(0) possibly_damaging(0.905) TCGA-IN-A7NU-01 1 62740559 62740559 A C KANK4 Missense_Mutation p.F73V 0.29 deleterious(0) benign(0.394) TCGA-IN-A7NU-01 1 75038101 75038101 A C C1orf173 Missense_Mutation p.L1098R 0.26 tolerated(0.34) benign(0.003) TCGA-IN-A7NU-01 1 94670638 94670638 C A ARHGAP29 Missense_Mutation p.V226F 0.38 deleterious(0) possibly_damaging(0.807) TCGA-IN-A7NU-01 1 97243261 97243261 A C PTBP2 Missense_Mutation p.I185L 0.27 deleterious(0.04) possibly_damaging(0.847) TCGA-IN-A7NU-01 20 17581448 17581448 C T DSTN Silent p.C23C 0.33 TCGA-IN-A7NU-01 20 29976935 29976935 G A DEFB119 Missense_Mutation p.R54C 0.46 deleterious(0) probably_damaging(0.968) TCGA-IN-A7NU-01 20 55211737 55211737 G A TFAP2C Missense_Mutation p.E332K 0.22 deleterious(0.01) benign(0.349) TCGA-IN-A7NU-01 20 55211765 55211765 G A TFAP2C Missense_Mutation p.G341E 0.22 tolerated(0.5) probably_damaging(1) TCGA-IN-A7NU-01 20 55211787 55211787 G A TFAP2C Silent p.R348R 0.25 TCGA-IN-A7NU-01 20 58411617 58411617 T A PHACTR3 Splice_Site p.X462_splice 0.11 TCGA-IN-A7NU-01 20 62597673 62597673 C T ZNF512B Silent p.T285T 0.11 TCGA-IN-A7NU-01 21 28338413 28338413 A G ADAMTS5 Silent p.L100L 0.18 TCGA-IN-A7NU-01 22 30683238 30683238 C T GATSL3 Silent p.L137L 0.12 TCGA-IN-A7NU-01 22 32072953 32072953 C T PRR14L 3'Flank 0.26 TCGA-IN-A7NU-01 22 45258435 45258435 T A PRR5-ARHGAP8 Missense_Mutation p.L631Q 0.37 deleterious_low_confidence(0.04) unknown(0) TCGA-IN-A7NU-01 2 129025839 129025839 C T HS6ST1 Missense_Mutation p.R378H 0.38 tolerated(0.06) benign(0.153) TCGA-IN-A7NU-01 2 132258080 132258080 G A AC093838.4 Intron 0.13 TCGA-IN-A7NU-01 2 141643739 141643739 C T LRP1B Missense_Mutation p.R1311K 0.45 benign(0.067) TCGA-IN-A7NU-01 2 179616053 179616053 T G TTN Intron 0.12 TCGA-IN-A7NU-01 2 191235835 191235835 G T INPP1 Missense_Mutation p.D303Y 0.07 deleterious(0) probably_damaging(1) TCGA-IN-A7NU-01 2 191235836 191235836 A G INPP1 Missense_Mutation p.D303G 0.06 deleterious(0) probably_damaging(0.999) TCGA-IN-A7NU-01 2 191900898 191900898 T C STAT4 Missense_Mutation p.K521R 0.24 deleterious(0.04) probably_damaging(1) TCGA-IN-A7NU-01 2 21229011 21229011 A T APOB Missense_Mutation p.F3577I 0.50 benign(0.063) TCGA-IN-A7NU-01 2 241969879 241969879 C T SNED1 Missense_Mutation p.T131M 0.21 deleterious(0) probably_damaging(0.97) TCGA-IN-A7NU-01 2 63092087 63092089 GAA - EHBP1 In_Frame_Del p.E365del 0.27 TCGA-IN-A7NU-01 2 80096986 80096986 A G CTNNA2 Silent p.Q170Q 0.47 TCGA-IN-A7NU-01 2 86992988 86992988 A C RMND5A Missense_Mutation p.Q232P 0.19 tolerated(0.06) benign(0.169) TCGA-IN-A7NU-01 3 11076340 11076340 T C SLC6A1 Missense_Mutation p.Y551H 0.42 tolerated(0.08) probably_damaging(0.996) TCGA-IN-A7NU-01 3 148558474 148558474 G C CPB1 Missense_Mutation p.V92L 0.30 deleterious(0) benign(0.16) TCGA-IN-A7NU-01 3 151055929 151055929 G A P2RY12 Silent p.N235N 0.24 TCGA-IN-A7NU-01 3 23250306 23250306 A C UBE2E2 Missense_Mutation p.K39T 0.49 tolerated(0.1) benign(0.403) TCGA-IN-A7NU-01 3 47632284 47632284 C T SMARCC1 Missense_Mutation p.M1029I 0.68 tolerated_low_confidence(0.17) unknown(0) TCGA-IN-A7NU-01 4 6050634 6050634 C G JAKMIP1 Missense_Mutation p.E660Q 0.18 deleterious(0) probably_damaging(0.999) TCGA-IN-A7NU-01 5 113740264 113740264 A G KCNN2 Missense_Mutation p.T238A 0.31 tolerated(0.05) probably_damaging(0.973) TCGA-IN-A7NU-01 5 137661570 137661570 C T CDC25C Silent p.P131P 0.21 TCGA-IN-A7NU-01 5 140590075 140590075 C T PCDHB12 Silent p.G532G 0.20 TCGA-IN-A7NU-01 5 140712139 140712139 C T PCDHGA1 Nonsense_Mutation p.R630* 0.25 TCGA-IN-A7NU-01 5 19721508 19721508 C A CDH18 Silent p.V197V 0.29 TCGA-IN-A7NU-01 5 43173516 43173517 - A ZNF131 Frame_Shift_Ins p.G353Rfs*16 0.17 TCGA-IN-A7NU-01 5 99897795 99897795 G A FAM174A Missense_Mutation p.V158I 0.21 tolerated(0.32) probably_damaging(0.956) TCGA-IN-A7NU-01 6 127836107 127836107 C T SOGA3 Missense_Mutation p.R396H 0.12 deleterious(0) probably_damaging(0.999) TCGA-IN-A7NU-01 6 160188041 160188041 T A ACAT2 Nonsense_Mutation p.C65* 0.44 TCGA-IN-A7NU-01 6 31695065 31695065 G A DDAH2 Silent p.G269G 0.23 TCGA-IN-A7NU-01 6 56495062 56495062 T C DST Missense_Mutation p.N884S 0.40 benign(0.06) TCGA-IN-A7NU-01 7 107114764 107114764 C T GPR22 Missense_Mutation p.L87F 0.28 deleterious(0.04) benign(0.025) TCGA-IN-A7NU-01 7 111634231 111634231 T G DOCK4 Missense_Mutation p.T92P 0.35 deleterious(0) possibly_damaging(0.853) TCGA-IN-A7NU-01 7 114302139 114302139 T G FOXP2 Missense_Mutation p.L581R 0.32 deleterious(0) probably_damaging(0.999) TCGA-IN-A7NU-01 7 122787309 122787309 A T SLC13A1 Missense_Mutation p.L239H 0.29 tolerated(0.45) probably_damaging(0.967) TCGA-IN-A7NU-01 7 151860574 151860574 C T KMT2C Missense_Mutation p.C3363Y 0.33 possibly_damaging(0.61) TCGA-IN-A7NU-01 7 50444413 50444413 G A IKZF1 Missense_Mutation p.G115R 0.33 deleterious(0) probably_damaging(0.999) TCGA-IN-A7NU-01 7 81799900 81799900 A C CACNA2D1 Missense_Mutation p.V107G 0.27 deleterious(0.04) benign(0.088) TCGA-IN-A7NU-01 8 104897701 104897701 A G RIMS2 Missense_Mutation p.S292G 0.12 tolerated_low_confidence(0.7) benign(0.001) TCGA-IN-A7NU-01 8 142435158 142435158 A C PTP4A3 Missense_Mutation p.K39T 0.28 deleterious(0.01) possibly_damaging(0.545) TCGA-IN-A7NU-01 8 146067830 146067830 T C ZNF7 Silent p.C446C 0.10 TCGA-IN-A7NU-01 8 1728532 1728532 C T CLN8 Silent p.D220D 0.17 TCGA-IN-A7NU-01 8 79646040 79646040 T C IL7 Missense_Mutation p.K148E 0.12 deleterious(0) possibly_damaging(0.893) TCGA-IN-A7NU-01 9 120474912 120474912 A T TLR4 Missense_Mutation p.E169V 0.27 tolerated(0.13) possibly_damaging(0.48) TCGA-IN-A7NU-01 9 15185374 15185374 G A TTC39B Silent p.A506A 0.20 TCGA-IN-A7NU-01 9 18906740 18906740 G T ADAMTSL1 Missense_Mutation p.R1671I 0.19 tolerated(0.07) possibly_damaging(0.477) TCGA-IN-A7NU-01 9 2056835 2056835 A G SMARCA2 Missense_Mutation p.Q446R 0.18 benign(0.227) TCGA-IN-A7NU-01 X 3241737 3241737 C T MXRA5 Silent p.T663T 0.51 TCGA-IN-A7NU-01 X 69282587 69282587 C T OTUD6A Silent p.S71S 0.32 TCGA-IN-A7NU-01 X 75650235 75650235 T A MAGEE1 Missense_Mutation p.L638I 0.38 deleterious(0) probably_damaging(0.999) TCGA-IN-AB1V-01 11 1016004 1016006 GAG - MUC6 In_Frame_Del p.S2266del 0.25 TCGA-IN-AB1V-01 11 1033061 1033061 A T MUC6 Missense_Mutation p.S23T 0.10 unknown(0) TCGA-IN-AB1V-01 11 113679074 113679074 A C USP28 Missense_Mutation p.I750M 0.20 deleterious(0.01) benign(0.439) TCGA-IN-AB1V-01 11 1221128 1221128 G A MUC5AC RNA 0.20 TCGA-IN-AB1V-01 11 43333595 43333595 G A API5 5'UTR 0.45 TCGA-IN-AB1V-01 11 55890027 55890027 T A OR8H3 Missense_Mutation p.M60K 0.13 deleterious(0) probably_damaging(0.932) TCGA-IN-AB1V-01 11 65144356 65144356 C T SLC25A45 Silent p.T177T 0.15 TCGA-IN-AB1V-01 11 74562162 74562162 C T XRRA1 Missense_Mutation p.V443I 0.10 tolerated(1) benign(0) TCGA-IN-AB1V-01 11 77602877 77602877 G T INTS4 Silent p.I766I 0.12 TCGA-IN-AB1V-01 11 77961262 77961262 G A GAB2 Silent p.S187S 0.21 TCGA-IN-AB1V-01 12 53586947 53586947 C T ITGB7 Missense_Mutation p.R568Q 0.21 deleterious(0.01) probably_damaging(0.974) TCGA-IN-AB1V-01 12 70989988 70989988 C T PTPRB Missense_Mutation p.E367K 0.38 tolerated(0.74) benign(0.039) TCGA-IN-AB1V-01 12 70990049 70990049 C T PTPRB Silent p.L346L 0.51 TCGA-IN-AB1V-01 12 70990070 70990070 C T PTPRB Silent p.E339E 0.47 TCGA-IN-AB1V-01 13 76408361 76408361 G A LMO7 Splice_Site p.X789_splice 0.08 TCGA-IN-AB1V-01 14 103802113 103802113 A T EIF5 5'UTR 0.18 TCGA-IN-AB1V-01 14 107013105 107013105 G A IGHV3-49 Silent p.L64L 0.10 TCGA-IN-AB1V-01 14 20502653 20502653 G A OR4K13 Missense_Mutation p.R89C 0.15 tolerated(0.08) benign(0.001) TCGA-IN-AB1V-01 14 52937268 52937268 T A TXNDC16 Silent p.G481G 0.18 TCGA-IN-AB1V-01 14 52937269 52937269 C T TXNDC16 Missense_Mutation p.G481E 0.20 deleterious(0) probably_damaging(0.999) TCGA-IN-AB1V-01 14 81610420 81610420 C A TSHR Missense_Mutation p.A673D 0.11 deleterious(0) probably_damaging(1) TCGA-IN-AB1V-01 15 30029527 30029527 C T TJP1 Missense_Mutation p.V450I 0.13 tolerated(0.1) possibly_damaging(0.844) TCGA-IN-AB1V-01 15 38643535 38643535 C T SPRED1 Silent p.C335C 0.20 TCGA-IN-AB1V-01 15 45559903 45559903 G A SLC28A2 Missense_Mutation p.A370T 0.12 deleterious(0) probably_damaging(1) TCGA-IN-AB1V-01 16 18853076 18853076 G A SMG1 Silent p.F2169F 0.12 TCGA-IN-AB1V-01 16 2349508 2349508 C T ABCA3 Missense_Mutation p.R546K 0.15 tolerated(1) benign(0) TCGA-IN-AB1V-01 16 599161 599161 C T CAPN15 Missense_Mutation p.R540W 0.07 deleterious(0.01) probably_damaging(1) TCGA-IN-AB1V-01 16 68014035 68014035 G A DPEP3 Silent p.R108R 0.16 TCGA-IN-AB1V-01 17 39742686 39742686 C T KRT14 Missense_Mutation p.R134H 0.14 tolerated(0.1) benign(0.231) TCGA-IN-AB1V-01 17 44952652 44952652 A G WNT9B Missense_Mutation p.S174G 0.09 tolerated(0.06) benign(0.09) TCGA-IN-AB1V-01 17 51902066 51902066 G A KIF2B Missense_Mutation p.G558R 0.26 tolerated(0.54) benign(0.01) TCGA-IN-AB1V-01 17 7495631 7495631 G A FXR2 Missense_Mutation p.R623C 0.20 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-IN-AB1V-01 17 76696475 76696475 C T CYTH1 Missense_Mutation p.R163Q 0.15 deleterious(0.03) probably_damaging(0.991) TCGA-IN-AB1V-01 18 14537968 14537968 T C POTEC Silent p.V214V 0.17 TCGA-IN-AB1V-01 18 59221613 59221613 G A CDH20 Silent p.T697T 0.20 TCGA-IN-AB1V-01 19 14627601 14627601 G C DNAJB1 Missense_Mutation p.R157G 0.11 tolerated(0.08) benign(0.011) TCGA-IN-AB1V-01 19 17893893 17893893 G A FCHO1 Missense_Mutation p.G669R 0.10 deleterious(0.01) possibly_damaging(0.723) TCGA-IN-AB1V-01 1 152282835 152282835 T C FLG Silent p.V1509V 0.03 TCGA-IN-AB1V-01 1 20517251 20517251 C T UBXN10 Missense_Mutation p.P66L 0.12 tolerated(0.14) benign(0.003) TCGA-IN-AB1V-01 1 248437000 248437000 G T OR2T33 Silent p.G39G 0.33 TCGA-IN-AB1V-01 1 45268798 45268798 G T PLK3 Missense_Mutation p.Q307H 0.19 tolerated(0.2) probably_damaging(0.917) TCGA-IN-AB1V-01 1 45295610 45295610 C G PTCH2 Missense_Mutation p.M302I 0.27 tolerated(0.38) benign(0) TCGA-IN-AB1V-01 1 82372819 82372819 A G LPHN2 Missense_Mutation p.Y64C 0.04 deleterious(0) probably_damaging(1) TCGA-IN-AB1V-01 20 2621849 2621849 A G TMC2 Missense_Mutation p.N858S 0.25 tolerated(1) benign(0.001) TCGA-IN-AB1V-01 22 29654839 29654839 G A EMID1 Missense_Mutation p.G413D 0.07 deleterious(0.01) possibly_damaging(0.789) TCGA-IN-AB1V-01 22 39966878 39966878 C A CACNA1I Missense_Mutation p.P41T 0.20 tolerated_low_confidence(0.22) possibly_damaging(0.603) TCGA-IN-AB1V-01 2 121107004 121107004 G A INHBB Missense_Mutation p.V260M 0.18 deleterious(0.01) probably_damaging(1) TCGA-IN-AB1V-01 2 170606068 170606068 C T KLHL23 Silent p.C501C 0.23 TCGA-IN-AB1V-01 2 209028015 209028015 C T CRYGA Silent p.Q55Q 0.12 TCGA-IN-AB1V-01 2 43452840 43452840 C T ZFP36L2 Missense_Mutation p.A35T 0.29 deleterious(0.05) probably_damaging(0.945) TCGA-IN-AB1V-01 3 13860467 13860467 G A WNT7A Missense_Mutation p.R342C 0.21 deleterious(0) probably_damaging(0.953) TCGA-IN-AB1V-01 3 160150164 160150164 A C SMC4 Silent p.R1131R 0.05 TCGA-IN-AB1V-01 3 46497788 46497788 G T LTF Missense_Mutation p.T103N 0.18 tolerated(0.07) benign(0.044) TCGA-IN-AB1V-01 3 6903133 6903133 G A GRM7 Missense_Mutation p.V20M 0.31 tolerated(0.08) benign(0.003) TCGA-IN-AB1V-01 4 2172897 2172897 C A POLN Missense_Mutation p.K462N 0.18 deleterious(0.03) probably_damaging(0.941) TCGA-IN-AB1V-01 4 46995388 46995388 G A GABRA4 Silent p.F18F 0.17 TCGA-IN-AB1V-01 4 47405725 47405725 C T GABRB1 Silent p.L278L 0.16 TCGA-IN-AB1V-01 4 48851986 48851986 T C OCIAD1 Silent p.F88F 0.16 TCGA-IN-AB1V-01 5 140501614 140501614 C A PCDHB4 Missense_Mutation p.Q12K 0.22 deleterious_low_confidence(0) benign(0.285) TCGA-IN-AB1V-01 5 1406321 1406321 G A SLC6A3 Silent p.V527V 0.15 TCGA-IN-AB1V-01 6 139609680 139609680 T C TXLNB Silent p.P119P 0.07 TCGA-IN-AB1V-01 6 27835239 27835241 CTT - HIST1H1B In_Frame_Del p.K23del 0.30 TCGA-IN-AB1V-01 6 47221027 47221027 C T TNFRSF21 Missense_Mutation p.E492K 0.35 deleterious(0) probably_damaging(0.933) TCGA-IN-AB1V-01 7 138566162 138566162 G C KIAA1549 Missense_Mutation p.P1401A 0.25 tolerated(0.2) benign(0.203) TCGA-IN-AB1V-01 7 155093400 155093400 T A INSIG1 Silent p.A179A 0.17 TCGA-IN-AB1V-01 7 4259899 4259899 G A SDK1 Missense_Mutation p.E1900K 0.13 tolerated(0.08) benign(0.023) TCGA-IN-AB1V-01 7 48559814 48559814 G A ABCA13 Missense_Mutation p.V4659M 0.12 probably_damaging(0.919) TCGA-IN-AB1V-01 7 53103786 53103786 T A POM121L12 Missense_Mutation p.I141N 0.18 deleterious(0) possibly_damaging(0.891) TCGA-IN-AB1V-01 7 75052198 75052198 G T POM121C Missense_Mutation p.T446N 0.27 deleterious(0.02) benign(0.232) TCGA-IN-AB1V-01 7 77998505 77998505 G A MAGI2 Silent p.I357I 0.15 TCGA-IN-AB1V-01 8 72969979 72969979 T G TRPA1 Missense_Mutation p.N356H 0.17 deleterious(0.02) probably_damaging(0.977) TCGA-IN-AB1V-01 8 87165044 87165044 G A ATP6V0D2 Splice_Site p.X298_splice 0.25 TCGA-IN-AB1V-01 8 87165113 87165113 G A ATP6V0D2 Silent p.L320L 0.18 TCGA-IN-AB1V-01 8 87165116 87165116 G A ATP6V0D2 Silent p.K321K 0.21 TCGA-IN-AB1V-01 8 87165130 87165130 G A ATP6V0D2 Missense_Mutation p.R326K 0.25 deleterious(0.01) probably_damaging(0.951) TCGA-IN-AB1V-01 9 119094640 119094640 C T PAPPA Missense_Mutation p.A1097V 0.24 tolerated(0.14) benign(0.003) TCGA-IN-AB1V-01 9 75303654 75303654 G A TMC1 Missense_Mutation p.E16K 0.15 tolerated_low_confidence(0.62) unknown(0) TCGA-IN-AB1X-01 10 131671824 131671824 C T EBF3 Missense_Mutation p.V225M 0.15 deleterious(0.03) possibly_damaging(0.461) TCGA-IN-AB1X-01 10 22617555 22617555 C T BMI1 Silent p.C166C 0.21 TCGA-IN-AB1X-01 10 27389337 27389337 C T ANKRD26 5'UTR 0.25 TCGA-IN-AB1X-01 10 323213 323213 G A DIP2C 3'UTR 0.19 TCGA-IN-AB1X-01 10 38121367 38121367 A C ZNF248 Missense_Mutation p.F306V 0.21 deleterious(0) benign(0.141) TCGA-IN-AB1X-01 10 51562281 51562281 C - MSMB Frame_Shift_Del p.P76Lfs*38 0.14 TCGA-IN-AB1X-01 11 126141492 126141494 GAA - FOXRED1 In_Frame_Del p.K84del 0.33 TCGA-IN-AB1X-01 11 126432755 126432755 C A KIRREL3 Missense_Mutation p.K36N 0.14 tolerated_low_confidence(0.16) possibly_damaging(0.529) TCGA-IN-AB1X-01 11 19251266 19251266 G A E2F8 Missense_Mutation p.T543M 0.23 tolerated(0.22) benign(0.068) TCGA-IN-AB1X-01 11 1954967 1954967 G A TNNT3 Missense_Mutation p.R63H 0.20 deleterious(0) probably_damaging(0.988) TCGA-IN-AB1X-01 11 56230190 56230190 C T OR5M9 Missense_Mutation p.D230N 0.12 deleterious(0.02) benign(0.02) TCGA-IN-AB1X-01 11 6891724 6891724 T G OR10A2 Missense_Mutation p.F247V 0.14 deleterious(0.05) probably_damaging(0.996) TCGA-IN-AB1X-01 11 6898270 6898270 T C OR10A4 Missense_Mutation p.L131S 0.10 deleterious(0) probably_damaging(0.999) TCGA-IN-AB1X-01 11 92531036 92531036 C A FAT3 Silent p.V1619V 0.16 TCGA-IN-AB1X-01 12 107236459 107236459 C T RIC8B Missense_Mutation p.T310M 0.20 deleterious(0.02) probably_damaging(0.981) TCGA-IN-AB1X-01 12 120110109 120110109 C T PRKAB1 Missense_Mutation p.P55S 0.18 tolerated(0.13) benign(0.004) TCGA-IN-AB1X-01 12 125438713 125438713 C T DHX37 Missense_Mutation p.R833Q 0.13 tolerated(0.18) benign(0.153) TCGA-IN-AB1X-01 12 41410493 41410493 A G CNTN1 Missense_Mutation p.R732G 0.22 deleterious(0.04) possibly_damaging(0.703) TCGA-IN-AB1X-01 12 52309191 52309191 G A ACVRL1 Missense_Mutation p.G319S 0.15 tolerated(0.07) possibly_damaging(0.886) TCGA-IN-AB1X-01 12 52992727 52992727 G A KRT72 Missense_Mutation p.S199L 0.21 tolerated(0.05) benign(0.062) TCGA-IN-AB1X-01 12 78511852 78511852 G A NAV3 Missense_Mutation p.D939N 0.20 tolerated(0.3) benign(0.12) TCGA-IN-AB1X-01 12 98848973 98848973 C T SLC9A7P1 RNA 0.21 TCGA-IN-AB1X-01 13 111114690 111114690 C T COL4A2 Missense_Mutation p.R579C 0.18 possibly_damaging(0.727) TCGA-IN-AB1X-01 13 31036793 31036793 G A HMGB1 Missense_Mutation p.P118L 0.17 deleterious(0.04) possibly_damaging(0.589) TCGA-IN-AB1X-01 13 32711037 32711037 C G FRY Silent p.L369L 0.20 TCGA-IN-AB1X-01 14 106173605 106173605 G A IGHA1 Missense_Mutation p.P321L 0.09 deleterious(0) probably_damaging(0.991) TCGA-IN-AB1X-01 14 37132439 37132439 G A PAX9 Silent p.K114K 0.14 TCGA-IN-AB1X-01 14 55621459 55621459 C T DLGAP5 Missense_Mutation p.V647I 0.11 tolerated(0.2) benign(0.045) TCGA-IN-AB1X-01 14 67854066 67854066 C T PLEK2 Missense_Mutation p.A348T 0.14 deleterious(0) probably_damaging(0.999) TCGA-IN-AB1X-01 15 23811870 23811870 G T MKRN3 Missense_Mutation p.C314F 0.16 deleterious(0) probably_damaging(1) TCGA-IN-AB1X-01 15 25463663 25463663 A C SNORD115-27 5'Flank 0.23 TCGA-IN-AB1X-01 15 45545639 45545639 G A SLC28A2 Missense_Mutation p.V31I 0.18 tolerated(0.47) benign(0) TCGA-IN-AB1X-01 15 66838999 66838999 C T ZWILCH Silent p.S586S 0.13 TCGA-IN-AB1X-01 16 19873289 19873289 C T GPRC5B Missense_Mutation p.R346Q 0.20 tolerated(0.23) benign(0.408) TCGA-IN-AB1X-01 16 5053560 5053560 G A SEC14L5 Missense_Mutation p.V430M 0.28 deleterious(0) probably_damaging(0.997) TCGA-IN-AB1X-01 16 58633243 58633243 G A CNOT1 5'UTR 0.19 TCGA-IN-AB1X-01 16 84229876 84229876 G A ADAD2 Missense_Mutation p.E558K 0.18 tolerated(0.09) benign(0.063) TCGA-IN-AB1X-01 17 10427805 10427805 C T MYH2 Missense_Mutation p.R1718H 0.24 deleterious(0) probably_damaging(0.947) TCGA-IN-AB1X-01 17 57335160 57335160 G A GDPD1 Missense_Mutation p.G179S 0.19 deleterious(0.01) probably_damaging(1) TCGA-IN-AB1X-01 17 73499478 73499478 T G CASKIN2 Missense_Mutation p.N604T 0.20 tolerated(1) benign(0.038) TCGA-IN-AB1X-01 17 76476825 76476825 G T DNAH17 Missense_Mutation p.Q2551K 0.11 possibly_damaging(0.874) TCGA-IN-AB1X-01 18 52895540 52895540 C A TCF4 Missense_Mutation p.K746N 0.31 deleterious(0) probably_damaging(0.998) TCGA-IN-AB1X-01 18 6898560 6898560 A C ARHGAP28 Intron 0.23 TCGA-IN-AB1X-01 19 21608448 21608448 A C ZNF493 3'UTR 0.12 TCGA-IN-AB1X-01 19 21608454 21608454 A C ZNF493 3'UTR 0.12 TCGA-IN-AB1X-01 19 336151 336151 C T MIER2 Missense_Mutation p.S11N 0.17 tolerated_low_confidence(0.05) benign(0.411) TCGA-IN-AB1X-01 19 37643128 37643128 G T ZNF585A Missense_Mutation p.A503D 0.15 deleterious(0.02) probably_damaging(1) TCGA-IN-AB1X-01 19 40827943 40827943 C T C19orf47 Missense_Mutation p.S372N 0.19 deleterious(0) probably_damaging(0.999) TCGA-IN-AB1X-01 19 43348672 43348672 G A PSG10P RNA 0.17 TCGA-IN-AB1X-01 19 43349192 43349192 T C PSG10P RNA 0.20 TCGA-IN-AB1X-01 19 44590089 44590089 A C ZNF284 Missense_Mutation p.K153T 0.16 tolerated(0.3) benign(0.348) TCGA-IN-AB1X-01 19 4679894 4679894 A C DPP9 Missense_Mutation p.F847V 0.24 tolerated(0.51) probably_damaging(0.942) TCGA-IN-AB1X-01 19 49401115 49401115 T G TULP2 Missense_Mutation p.D4A 0.04 deleterious(0) benign(0.106) TCGA-IN-AB1X-01 19 53385076 53385076 C A ZNF320 Missense_Mutation p.W101C 0.19 tolerated(0.12) benign(0.012) TCGA-IN-AB1X-01 19 58928242 58928242 C T ZNF584 Silent p.I119I 0.13 TCGA-IN-AB1X-01 19 9068095 9068095 G T MUC16 Missense_Mutation p.P6451T 0.21 unknown(0) TCGA-IN-AB1X-01 1 10155591 10155591 C T UBE4B Missense_Mutation p.T95M 0.23 deleterious(0) possibly_damaging(0.791) TCGA-IN-AB1X-01 1 108679232 108679232 T C SLC25A24 3'UTR 0.13 TCGA-IN-AB1X-01 1 120301826 120301826 C T HMGCS2 Silent p.G255G 0.22 TCGA-IN-AB1X-01 1 1391200 1391200 C T ATAD3C Silent p.I156I 0.42 TCGA-IN-AB1X-01 1 14105297 14105297 A T PRDM2 Missense_Mutation p.E336V 0.28 possibly_damaging(0.854) TCGA-IN-AB1X-01 1 153910298 153910298 C A DENND4B Silent p.V669V 0.18 TCGA-IN-AB1X-01 1 155939042 155939042 T C ARHGEF2 Missense_Mutation p.N38S 0.12 tolerated(0.06) probably_damaging(0.993) TCGA-IN-AB1X-01 1 157494245 157494245 G T FCRL5 Missense_Mutation p.P688Q 0.19 deleterious(0) probably_damaging(0.999) TCGA-IN-AB1X-01 1 158368934 158368934 A C OR10T2 Missense_Mutation p.F108C 0.17 deleterious(0) probably_damaging(0.931) TCGA-IN-AB1X-01 1 160105327 160105327 A G ATP1A2 Missense_Mutation p.K740R 0.30 deleterious(0.01) benign(0.183) TCGA-IN-AB1X-01 1 16460978 16460978 A - EPHA2 Frame_Shift_Del p.F556Sfs*27 0.23 TCGA-IN-AB1X-01 1 172558108 172558108 A C SUCO Missense_Mutation p.I623L 0.19 tolerated(0.71) benign(0.007) TCGA-IN-AB1X-01 1 176564206 176564206 A G PAPPA2 Missense_Mutation p.E489G 0.21 tolerated(0.21) benign(0.37) TCGA-IN-AB1X-01 1 176838073 176838073 G A ASTN1 Missense_Mutation p.S1185F 0.17 deleterious(0) possibly_damaging(0.748) TCGA-IN-AB1X-01 1 182025763 182025763 C T ZNF648 Silent p.S461S 0.15 TCGA-IN-AB1X-01 1 205883958 205883958 C A SLC26A9 3'UTR 0.13 TCGA-IN-AB1X-01 1 220284129 220284129 T A IARS2 Silent p.V443V 0.11 TCGA-IN-AB1X-01 1 248028117 248028117 A G TRIM58 Silent p.R209R 0.24 TCGA-IN-AB1X-01 1 35650103 35650103 C A SFPQ Missense_Mutation p.R693I 0.25 deleterious(0) possibly_damaging(0.766) TCGA-IN-AB1X-01 1 43788411 43788411 A C TIE1 3'UTR 0.15 TCGA-IN-AB1X-01 1 86375668 86375668 C T COL24A1 Missense_Mutation p.G879S 0.16 deleterious(0) probably_damaging(1) TCGA-IN-AB1X-01 1 99772121 99772121 A G LPPR4 Missense_Mutation p.E616G 0.16 deleterious(0.03) benign(0.256) TCGA-IN-AB1X-01 20 41420025 41420025 T C PTPRT Missense_Mutation p.D99G 0.23 deleterious(0) probably_damaging(0.998) TCGA-IN-AB1X-01 20 43926884 43926884 C T MATN4 Missense_Mutation p.R451H 0.20 probably_damaging(0.994) TCGA-IN-AB1X-01 21 37649361 37649361 C T DOPEY2 Missense_Mutation p.S1892L 0.20 deleterious(0) possibly_damaging(0.624) TCGA-IN-AB1X-01 21 41741085 41741085 G A DSCAM Missense_Mutation p.T199M 0.13 deleterious(0) probably_damaging(1) TCGA-IN-AB1X-01 21 43531710 43531710 G A UMODL1 Missense_Mutation p.R793Q 0.17 tolerated(0.72) benign(0.417) TCGA-IN-AB1X-01 22 18102270 18102270 A G ATP6V1E1 Missense_Mutation p.I19T 0.21 deleterious(0.01) benign(0.405) TCGA-IN-AB1X-01 22 50900130 50900130 C T SBF1 Silent p.P887P 0.23 TCGA-IN-AB1X-01 2 116599826 116599826 A G DPP10 Missense_Mutation p.K770E 0.27 tolerated(0.33) benign(0.037) TCGA-IN-AB1X-01 2 167262883 167262883 G T SCN7A Missense_Mutation p.T1419N 0.18 deleterious(0.01) probably_damaging(0.965) TCGA-IN-AB1X-01 2 201845920 201845920 G A FAM126B 3'UTR 0.14 TCGA-IN-AB1X-01 2 202494511 202494511 C T TMEM237 Missense_Mutation p.M206I 0.22 deleterious(0.03) benign(0.192) TCGA-IN-AB1X-01 2 206166443 206166443 A T PARD3B Intron 0.23 TCGA-IN-AB1X-01 2 43927177 43927177 G A PLEKHH2 Nonsense_Mutation p.W360* 0.18 TCGA-IN-AB1X-01 3 113099824 113099824 A T WDR52 Missense_Mutation p.D658E 0.19 tolerated(0.16) benign(0.04) TCGA-IN-AB1X-01 3 130282135 130282135 G A COL6A6 Silent p.K96K 0.30 TCGA-IN-AB1X-01 3 173998590 173998590 G A NLGN1 Missense_Mutation p.D657N 0.26 tolerated(0.64) benign(0.001) TCGA-IN-AB1X-01 3 183756019 183756019 G T HTR3D Missense_Mutation p.A291S 0.24 tolerated_low_confidence(0.79) benign(0.218) TCGA-IN-AB1X-01 3 38739468 38739468 C T SCN10A Nonsense_Mutation p.W1748* 0.21 TCGA-IN-AB1X-01 3 40453405 40453405 G A ENTPD3 Missense_Mutation p.G130E 0.18 tolerated(0.43) benign(0.013) TCGA-IN-AB1X-01 3 4856200 4856200 G A ITPR1 Missense_Mutation p.R2537Q 0.15 deleterious(0) probably_damaging(0.999) TCGA-IN-AB1X-01 3 49570604 49570604 G A DAG1 Missense_Mutation p.R887Q 0.26 deleterious(0.01) unknown(0) TCGA-IN-AB1X-01 3 52643725 52643725 A G PBRM1 Missense_Mutation p.M724T 0.28 deleterious(0) benign(0.193) TCGA-IN-AB1X-01 3 7340481 7340481 G A GRM7 Missense_Mutation p.V283I 0.23 tolerated(0.29) benign(0.018) TCGA-IN-AB1X-01 4 155490726 155490726 T G FGB Missense_Mutation p.L340R 0.16 deleterious(0) probably_damaging(0.999) TCGA-IN-AB1X-01 4 158262606 158262606 T C GRIA2 Missense_Mutation p.F679L 0.22 deleterious(0) probably_damaging(0.971) TCGA-IN-AB1X-01 4 20884302 20884302 C T KCNIP4 Missense_Mutation p.R31H 0.26 deleterious(0.03) benign(0.074) TCGA-IN-AB1X-01 4 40440545 40440545 G C RBM47 Missense_Mutation p.H122Q 0.22 tolerated(0.36) benign(0.023) TCGA-IN-AB1X-01 4 73175181 73175181 G C ADAMTS3 Silent p.V704V 0.17 TCGA-IN-AB1X-01 4 98902435 98902435 G T STPG2 Missense_Mutation p.P216H 0.24 deleterious(0) probably_damaging(0.999) TCGA-IN-AB1X-01 5 140711720 140711720 C A PCDHGA1 Missense_Mutation p.S490Y 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.836) TCGA-IN-AB1X-01 6 137522119 137522119 C T IFNGR1 Missense_Mutation p.A254T 0.21 tolerated(0.26) benign(0.364) TCGA-IN-AB1X-01 6 150240783 150240783 C T RAET1G Silent p.T85T 0.05 TCGA-IN-AB1X-01 6 25665245 25665245 C T SCGN Silent p.S107S 0.23 TCGA-IN-AB1X-01 6 31735015 31735015 A G VWA7 Missense_Mutation p.L601P 0.17 deleterious(0) probably_damaging(0.937) TCGA-IN-AB1X-01 6 32805903 32805903 T C TAP2 Silent p.P36P 0.24 TCGA-IN-AB1X-01 6 90409400 90409400 G T MDN1 Missense_Mutation p.L2973I 0.23 benign(0.035) TCGA-IN-AB1X-01 6 94068113 94068113 G C EPHA7 Missense_Mutation p.F283L 0.24 tolerated(0.06) benign(0.341) TCGA-IN-AB1X-01 7 154862964 154862964 G A HTR5A-AS1 Missense_Mutation p.A17V 0.18 tolerated_low_confidence(0.11) possibly_damaging(0.695) TCGA-IN-AB1X-01 7 18669055 18669055 G A HDAC9 Silent p.K249K 0.11 TCGA-IN-AB1X-01 7 2649854 2649854 G T IQCE 3'UTR 0.14 TCGA-IN-AB1X-01 7 44875199 44875199 C A H2AFV Missense_Mutation p.R85L 0.14 deleterious(0) possibly_damaging(0.531) TCGA-IN-AB1X-01 7 48559759 48559759 C T ABCA13 Silent p.F4640F 0.21 TCGA-IN-AB1X-01 7 4901237 4901237 A T PAPOLB Missense_Mutation p.L68I 0.19 tolerated(0.18) probably_damaging(0.999) TCGA-IN-AB1X-01 7 86848849 86848849 C T TMEM243 5'UTR 0.34 TCGA-IN-AB1X-01 7 91570445 91570445 A T AKAP9 Missense_Mutation p.E11V 0.16 possibly_damaging(0.737) TCGA-IN-AB1X-01 7 92734380 92734380 C T SAMD9 Missense_Mutation p.R344Q 0.16 tolerated(0.05) possibly_damaging(0.737) TCGA-IN-AB1X-01 8 20008177 20008177 C A SLC18A1 Missense_Mutation p.R365L 0.19 deleterious(0.01) probably_damaging(0.975) TCGA-IN-AB1X-01 8 2815301 2815301 C A CSMD1 Missense_Mutation p.R3244I 0.19 probably_damaging(0.999) TCGA-IN-AB1X-01 8 73480110 73480110 A C KCNB2 Missense_Mutation p.E47D 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-IN-AB1X-01 8 97156742 97156742 G A GDF6 3'UTR 0.38 TCGA-IN-AB1X-01 9 101891277 101891277 C T TGFBR1 Nonsense_Mutation p.R80* 0.17 TCGA-IN-AB1X-01 9 117122185 117122185 A T AKNA Missense_Mutation p.L761H 0.08 deleterious(0) probably_damaging(0.994) TCGA-IN-AB1X-01 9 120474903 120474903 A C TLR4 Missense_Mutation p.K166T 0.15 tolerated(0.12) possibly_damaging(0.843) TCGA-IN-AB1X-01 9 121929675 121929675 A T BRINP1 Missense_Mutation p.F658Y 0.19 tolerated(0.11) benign(0.002) TCGA-IN-AB1X-01 9 19296084 19296084 T G DENND4C Missense_Mutation p.L294V 0.16 deleterious(0.03) possibly_damaging(0.82) TCGA-IN-AB1X-01 9 36162558 36162558 G A GLIPR2 3'UTR 0.35 TCGA-IN-AB1X-01 X 138708374 138708374 T G MCF2 Missense_Mutation p.K282T 0.09 deleterious(0.01) benign(0.309) TCGA-IN-AB1X-01 X 144337199 144337199 G A SPANXN1 Silent p.E28E 0.09 TCGA-IN-AB1X-01 X 154159896 154159896 G A F8 Silent p.A723A 0.15 TCGA-IN-AB1X-01 X 32583832 32583832 T C DMD Missense_Mutation p.K660R 0.14 possibly_damaging(0.828) TCGA-IN-AB1X-01 X 32717349 32717349 T A DMD Missense_Mutation p.Q237H 0.27 possibly_damaging(0.453) TCGA-IN-AB1X-01 X 49454058 49454058 G T PAGE1 Silent p.G127G 0.12 TCGA-IN-AB1X-01 X 5811181 5811181 G A NLGN4X Missense_Mutation p.R710C 0.22 deleterious(0) probably_damaging(0.988) TCGA-IN-AB1X-01 X 63615262 63615262 C A MTMR8 5'UTR 0.11 TCGA-IN-AB1X-01 X 77245439 77245439 G A ATP7A Missense_Mutation p.D441N 0.12 deleterious(0.05) probably_damaging(0.925) TCGA-IN-AB1X-01 X 78010422 78010422 G T LPAR4 Missense_Mutation p.R19I 0.11 tolerated_low_confidence(0.15) benign(0.028) TCGA-IP-7968-01 10 118434842 118434842 G A HSPA12A Missense_Mutation p.A493V 0.47 deleterious(0.02) possibly_damaging(0.606) TCGA-IP-7968-01 10 126714799 126714799 C A CTBP2 Missense_Mutation p.Q510H 0.36 deleterious_low_confidence(0.02) benign(0.264) TCGA-IP-7968-01 10 134006217 134006217 G A DPYSL4 Missense_Mutation p.G62S 0.37 deleterious(0.03) benign(0.189) TCGA-IP-7968-01 10 60573843 60573843 A C BICC1 Intron 0.33 TCGA-IP-7968-01 10 81107467 81107467 A T PPIF Missense_Mutation p.N55Y 0.20 deleterious_low_confidence(0) benign(0.007) TCGA-IP-7968-01 11 105732912 105732912 G C GRIA4 Missense_Mutation p.R217T 0.82 tolerated(0.07) probably_damaging(0.986) TCGA-IP-7968-01 11 44626715 44626715 C T CD82 Missense_Mutation p.R82C 0.24 deleterious(0) probably_damaging(0.999) TCGA-IP-7968-01 11 5364380 5364380 G T OR51B5 Nonsense_Mutation p.C125* 0.32 TCGA-IP-7968-01 11 5364381 5364381 C T OR51B5 Missense_Mutation p.C125Y 0.31 tolerated(0.05) benign(0.014) TCGA-IP-7968-01 11 77412319 77412319 C T RSF1 Missense_Mutation p.S652N 0.68 tolerated_low_confidence(0.37) benign(0.002) TCGA-IP-7968-01 12 102811552 102811552 C A IGF1 3'UTR 0.32 TCGA-IP-7968-01 12 108145867 108145867 G A PRDM4 Nonsense_Mutation p.Q151* 0.35 TCGA-IP-7968-01 12 23793813 23793813 T A SOX5 Missense_Mutation p.Q317L 0.50 deleterious(0.03) probably_damaging(0.978) TCGA-IP-7968-01 12 49579682 49579682 C T TUBA1A Missense_Mutation p.R156H 0.33 deleterious_low_confidence(0.04) benign(0.088) TCGA-IP-7968-01 12 55421022 55421022 C T NEUROD4 Nonsense_Mutation p.Q267* 0.34 TCGA-IP-7968-01 12 56874168 56874168 A G GLS2 Silent p.D62D 0.43 TCGA-IP-7968-01 12 6440068 6440068 C T TNFRSF1A Silent p.T192T 0.44 TCGA-IP-7968-01 12 64456870 64456870 G A SRGAP1 Silent p.A325A 0.10 TCGA-IP-7968-01 12 68618976 68618976 G A IL26 Missense_Mutation p.R106C 0.31 deleterious(0.04) benign(0.347) TCGA-IP-7968-01 12 93135306 93135306 A G PLEKHG7 Missense_Mutation p.K47E 0.07 tolerated(0.1) benign(0.141) TCGA-IP-7968-01 13 38357362 38357362 A C TRPC4 Missense_Mutation p.L37V 0.29 deleterious(0) probably_damaging(0.999) TCGA-IP-7968-01 13 52854029 52854029 C T RP11-248G5.8 RNA 0.13 TCGA-IP-7968-01 14 102516478 102516478 T C DYNC1H1 Silent p.L4585L 0.06 TCGA-IP-7968-01 14 105931130 105931130 G T MTA1 Missense_Mutation p.E488D 0.68 tolerated(1) benign(0.001) TCGA-IP-7968-01 14 55531365 55531365 A T MAPK1IP1L 3'UTR 0.30 TCGA-IP-7968-01 15 23811866 23811866 A T MKRN3 Missense_Mutation p.I313F 0.49 deleterious(0) probably_damaging(0.999) TCGA-IP-7968-01 15 53992012 53992012 G A WDR72 Missense_Mutation p.P567L 0.20 deleterious(0.02) benign(0.44) TCGA-IP-7968-01 15 68118581 68118581 C T SKOR1 Missense_Mutation p.R325C 0.24 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-IP-7968-01 15 75042262 75042262 G A CYP1A2 Silent p.P61P 0.27 TCGA-IP-7968-01 15 91433133 91433133 G A FES Missense_Mutation p.M330I 0.89 tolerated(0.2) benign(0.001) TCGA-IP-7968-01 15 91433164 91433164 G T FES Nonsense_Mutation p.E341* 0.88 TCGA-IP-7968-01 16 29994174 29994174 C A TAOK2 Missense_Mutation p.F317L 0.14 deleterious(0.04) benign(0.019) TCGA-IP-7968-01 16 30198029 30198029 C T CORO1A Silent p.D103D 0.19 TCGA-IP-7968-01 16 30544243 30544243 G A ZNF747 3'UTR 0.16 TCGA-IP-7968-01 16 30615983 30615983 C T ZNF689 Missense_Mutation p.G369R 0.13 deleterious(0) probably_damaging(1) TCGA-IP-7968-01 16 31213514 31213514 G A PYCARD Silent p.A95A 0.13 TCGA-IP-7968-01 16 65016158 65016158 G T CDH11 Missense_Mutation p.A349E 0.45 deleterious(0) probably_damaging(0.914) TCGA-IP-7968-01 16 74943527 74943527 G A WDR59 Missense_Mutation p.P505L 0.47 tolerated(0.11) possibly_damaging(0.575) TCGA-IP-7968-01 16 90095731 90095731 G A C16orf3 Missense_Mutation p.A7V 0.26 deleterious_low_confidence(0) possibly_damaging(0.695) TCGA-IP-7968-01 17 29226358 29226358 G C TEFM Silent p.L304L 0.26 TCGA-IP-7968-01 17 2934234 2934234 C T RAP1GAP2 Missense_Mutation p.S709F 0.30 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-IP-7968-01 17 39081631 39081631 G A KRT23 Missense_Mutation p.R373W 0.08 deleterious(0.01) possibly_damaging(0.713) TCGA-IP-7968-01 17 39135121 39135121 G A KRT40 Silent p.D377D 0.08 TCGA-IP-7968-01 17 58134504 58134504 C T HEATR6 Missense_Mutation p.V662I 0.21 tolerated(0.3) benign(0.041) TCGA-IP-7968-01 17 7574003 7574003 G A TP53 Nonsense_Mutation p.R342* 0.79 TCGA-IP-7968-01 17 76462786 76462786 G A DNAH17 Missense_Mutation p.A2950V 0.51 probably_damaging(0.967) TCGA-IP-7968-01 18 12274118 12274118 G A CIDEA Silent p.S119S 0.48 TCGA-IP-7968-01 18 8376491 8376491 G A PTPRM Missense_Mutation p.V1120I 0.44 deleterious(0) possibly_damaging(0.572) TCGA-IP-7968-01 19 10434179 10434179 T C RAVER1 Missense_Mutation p.M291V 0.30 tolerated(0.88) benign(0.003) TCGA-IP-7968-01 19 22951157 22951157 C T ZNF99 Missense_Mutation p.G59E 0.33 tolerated(0.34) possibly_damaging(0.752) TCGA-IP-7968-01 19 2403177 2403177 C T TMPRSS9 Silent p.S184S 0.54 TCGA-IP-7968-01 19 4512722 4512722 G A PLIN4 Missense_Mutation p.A403V 0.06 tolerated(0.12) benign(0.034) TCGA-IP-7968-01 19 47570202 47570202 C A ZC3H4 Missense_Mutation p.S1108I 0.15 benign(0.184) TCGA-IP-7968-01 19 4817152 4817152 C T TICAM1 Missense_Mutation p.R413Q 0.14 deleterious(0.03) benign(0.273) TCGA-IP-7968-01 19 52327921 52327921 G A FPR3 Missense_Mutation p.R307H 0.36 tolerated(0.06) benign(0.009) TCGA-IP-7968-01 19 53994528 53994528 C T ZNF813 Missense_Mutation p.L348F 0.05 deleterious(0.01) benign(0.248) TCGA-IP-7968-01 19 53994690 53994690 C T ZNF813 Missense_Mutation p.R402C 0.21 deleterious(0.03) benign(0.051) TCGA-IP-7968-01 19 57036448 57036448 A T ZNF471 Nonsense_Mutation p.R338* 0.26 TCGA-IP-7968-01 19 58439318 58439318 A T ZNF418 Silent p.S77S 0.31 TCGA-IP-7968-01 19 58489952 58489952 C T ZNF606 Missense_Mutation p.R699Q 0.23 tolerated(0.64) probably_damaging(0.994) TCGA-IP-7968-01 19 8670208 8670208 C T ADAMTS10 Missense_Mutation p.A42T 0.27 tolerated(0.63) benign(0.061) TCGA-IP-7968-01 19 9058711 9058711 A T MUC16 Missense_Mutation p.S9579T 0.28 unknown(0) TCGA-IP-7968-01 19 9297245 9297245 C T OR7D2 Missense_Mutation p.A263V 0.25 deleterious_low_confidence(0.03) benign(0.066) TCGA-IP-7968-01 1 103435780 103435780 C T COL11A1 Missense_Mutation p.E953K 0.21 unknown(0) TCGA-IP-7968-01 1 11561896 11561896 G A PTCHD2 Missense_Mutation p.G283S 0.23 deleterious(0) probably_damaging(0.999) TCGA-IP-7968-01 1 154461630 154461630 C T SHE Silent p.A307A 0.17 TCGA-IP-7968-01 1 158549094 158549094 G T OR10X1 Missense_Mutation p.A199E 0.34 deleterious(0.01) benign(0.069) TCGA-IP-7968-01 1 161284189 161284189 A G SDHC 5'UTR 0.29 TCGA-IP-7968-01 1 176564113 176564113 C T PAPPA2 Missense_Mutation p.A458V 0.29 tolerated(0.12) benign(0.259) TCGA-IP-7968-01 1 176845761 176845761 C A ASTN1 Missense_Mutation p.W1125C 0.23 deleterious(0.01) probably_damaging(0.993) TCGA-IP-7968-01 1 197070783 197070783 G C ASPM Missense_Mutation p.S2533C 0.28 deleterious(0) probably_damaging(0.982) TCGA-IP-7968-01 1 197404316 197404316 C T CRB1 Missense_Mutation p.S1108F 0.30 deleterious(0) probably_damaging(0.999) TCGA-IP-7968-01 1 215781446 215781446 C T KCTD3 Missense_Mutation p.A466V 0.30 deleterious(0) probably_damaging(0.997) TCGA-IP-7968-01 1 231004179 231004179 C T C1orf198 Missense_Mutation p.R27Q 0.43 tolerated(0.23) probably_damaging(0.997) TCGA-IP-7968-01 1 248202573 248202573 A T OR2L2 3'UTR 0.40 TCGA-IP-7968-01 1 248737956 248737956 C T OR2T34 Missense_Mutation p.V35M 0.11 tolerated(0.27) benign(0.009) TCGA-IP-7968-01 1 34070967 34070967 C T CSMD2 Silent p.P2151P 0.33 TCGA-IP-7968-01 1 35365751 35365751 C T DLGAP3 Missense_Mutation p.G411S 0.38 tolerated(0.68) benign(0.057) TCGA-IP-7968-01 20 44698970 44698970 G A NCOA5 Missense_Mutation p.R82W 0.34 deleterious_low_confidence(0) unknown(0) TCGA-IP-7968-01 20 50405596 50405596 G A SALL4 Missense_Mutation p.S849L 0.21 tolerated(0.18) benign(0.069) TCGA-IP-7968-01 20 61513397 61513397 G A DIDO1 Missense_Mutation p.A1304V 0.33 benign(0.003) TCGA-IP-7968-01 20 62422081 62422081 G A ZBTB46 Silent p.I10I 0.19 TCGA-IP-7968-01 20 62597698 62597698 G A ZNF512B Missense_Mutation p.T277M 0.17 tolerated_low_confidence(0.05) benign(0.439) TCGA-IP-7968-01 22 22988895 22988895 C T GGTLC2 Missense_Mutation p.P27L 0.52 deleterious(0.03) probably_damaging(0.987) TCGA-IP-7968-01 2 122519067 122519067 G A TSN Missense_Mutation p.V114M 0.35 deleterious(0.03) probably_damaging(0.986) TCGA-IP-7968-01 2 1653281 1653281 G T PXDN Silent p.G757G 0.33 TCGA-IP-7968-01 2 166606374 166606374 G A GALNT3 Missense_Mutation p.R553W 0.36 deleterious(0) probably_damaging(1) TCGA-IP-7968-01 2 172216943 172216943 A G METTL8 Missense_Mutation p.L75P 0.36 tolerated(0.33) benign(0.003) TCGA-IP-7968-01 2 176981726 176981726 G A HOXD10 Silent p.P55P 0.35 TCGA-IP-7968-01 2 178769850 178769850 G T PDE11A Nonsense_Mutation p.S379* 0.33 TCGA-IP-7968-01 2 179548772 179548772 T G TTN Missense_Mutation p.K10920N 0.19 TCGA-IP-7968-01 2 220032917 220032917 C T SLC23A3 Silent p.S274S 0.30 TCGA-IP-7968-01 2 25045415 25045416 - G ADCY3 Frame_Shift_Ins p.D990Rfs*26 0.25 TCGA-IP-7968-01 2 26712165 26712165 T G OTOF Splice_Site p.X321_splice 0.29 TCGA-IP-7968-01 2 28627222 28627223 - C FOSL2 Frame_Shift_Ins p.Q118Pfs*5 0.22 TCGA-IP-7968-01 2 43452440 43452440 C T ZFP36L2 Missense_Mutation p.C168Y 0.32 deleterious(0) probably_damaging(0.99) TCGA-IP-7968-01 3 11060366 11060366 G A SLC6A1 Silent p.L151L 0.25 TCGA-IP-7968-01 3 111693443 111693443 C T PHLDB2 3'UTR 0.30 TCGA-IP-7968-01 3 194790650 194790650 C T XXYLT1 Missense_Mutation p.G326S 0.30 deleterious(0) probably_damaging(1) TCGA-IP-7968-01 3 50314117 50314117 C T LSMEM2 5'Flank 0.44 TCGA-IP-7968-01 3 56115004 56115004 C T ERC2 Silent p.A494A 0.26 TCGA-IP-7968-01 4 100503097 100503097 C A MTTP Missense_Mutation p.L33M 0.40 deleterious(0.01) benign(0.217) TCGA-IP-7968-01 4 108816777 108816777 C G SGMS2 Missense_Mutation p.T23S 0.31 tolerated(0.3) benign(0) TCGA-IP-7968-01 4 134071388 134071388 C T PCDH10 Silent p.G31G 0.12 TCGA-IP-7968-01 4 134071615 134071615 A G PCDH10 Missense_Mutation p.Q107R 0.60 tolerated(1) benign(0) TCGA-IP-7968-01 4 13605585 13605585 G A BOD1L1 Missense_Mutation p.S980L 0.39 benign(0.022) TCGA-IP-7968-01 4 177113976 177113976 A T SPATA4 Missense_Mutation p.F164I 0.27 tolerated(0.41) benign(0.002) TCGA-IP-7968-01 4 3418745 3418745 C T RGS12 Nonsense_Mutation p.Q845* 0.46 TCGA-IP-7968-01 5 149677329 149677329 C T ARSI Silent p.T386T 0.53 TCGA-IP-7968-01 5 33936956 33936956 G A RXFP3 Silent p.T37T 0.63 TCGA-IP-7968-01 5 87501702 87501703 - A TMEM161B Frame_Shift_Ins p.L243Ffs*90 0.29 TCGA-IP-7968-01 6 13365421 13365421 C T GFOD1 Missense_Mutation p.G243S 0.07 deleterious(0.03) possibly_damaging(0.578) TCGA-IP-7968-01 6 42996916 42996916 C T RRP36 Nonsense_Mutation p.R244* 0.80 TCGA-IP-7968-01 6 56362226 56362226 G A DST Missense_Mutation p.P4102L 0.68 probably_damaging(0.959) TCGA-IP-7968-01 6 74115481 74115481 G T DDX43 Missense_Mutation p.D244Y 0.34 deleterious(0) possibly_damaging(0.492) TCGA-IP-7968-01 7 143807591 143807591 A T OR2A2 Missense_Mutation p.R306W 0.70 deleterious(0) probably_damaging(0.919) TCGA-IP-7968-01 7 154593099 154593099 A C DPP6 Missense_Mutation p.K445T 0.36 tolerated(0.25) benign(0.329) TCGA-IP-7968-01 7 154595588 154595588 C T DPP6 Silent p.N474N 0.27 TCGA-IP-7968-01 7 37988642 37988642 C T EPDR1 Missense_Mutation p.A157V 0.29 deleterious(0.01) possibly_damaging(0.811) TCGA-IP-7968-01 7 5353457 5353457 G A TNRC18 Silent p.D2355D 0.26 TCGA-IP-7968-01 7 99170715 99170715 G T ZNF655 Missense_Mutation p.M363I 0.35 deleterious(0.04) benign(0.043) TCGA-IP-7968-01 8 131955619 131955619 G T ADCY8 Missense_Mutation p.A444D 0.29 deleterious(0) probably_damaging(1) TCGA-IP-7968-01 8 135614315 135614315 C T ZFAT Silent p.P549P 0.33 TCGA-IP-7968-01 8 195985 195985 C T ZNF596 Nonsense_Mutation p.R380* 0.58 TCGA-IP-7968-01 8 36788588 36788588 G A KCNU1 Silent p.T952T 0.65 TCGA-IP-7968-01 9 101608289 101608289 C T GALNT12 Missense_Mutation p.R497C 0.29 deleterious(0.02) benign(0.318) TCGA-IP-7968-01 9 124855535 124855535 C T TTLL11 Missense_Mutation p.G55R 0.45 deleterious_low_confidence(0) benign(0.057) TCGA-IP-7968-01 9 130271314 130271314 G A FAM129B Nonsense_Mutation p.R420* 0.40 TCGA-IP-7968-01 9 135073611 135073611 G A NTNG2 Missense_Mutation p.G158R 0.44 deleterious(0) probably_damaging(0.999) TCGA-IP-7968-01 9 4849472 4849472 A G RCL1 Missense_Mutation p.Q298R 0.09 deleterious(0) probably_damaging(0.987) TCGA-IP-7968-01 9 88247581 88247581 G T AGTPBP1 Missense_Mutation p.Q631K 0.10 deleterious(0) probably_damaging(0.99) TCGA-IP-7968-01 X 11174711 11174711 G C ARHGAP6 Missense_Mutation p.S615R 0.64 tolerated(0.22) benign(0.171) TCGA-IP-7968-01 X 112048266 112048266 C T AMOT Missense_Mutation p.R562H 0.65 unknown(0) TCGA-IP-7968-01 X 135579761 135579761 T A HTATSF1 Intron 0.56 TCGA-IP-7968-01 X 19387274 19387274 G A MAP3K15 Missense_Mutation p.A1155V 0.63 tolerated(0.55) benign(0.001) TCGA-IP-7968-01 X 78426762 78426762 T A GPR174 Missense_Mutation p.F86L 0.91 deleterious(0.03) benign(0.335) TCGA-KB-A6F5-01 10 74645593 74645593 C T MCU 3'UTR 0.09 TCGA-KB-A6F5-01 11 105782656 105782656 C T GRIA4 Intron 0.21 TCGA-KB-A6F5-01 11 117860318 117860318 G A IL10RA Missense_Mutation p.R117H 0.23 deleterious(0) probably_damaging(1) TCGA-KB-A6F5-01 11 19077733 19077733 C T MRGPRX2 Missense_Mutation p.G73R 0.21 tolerated(0.06) benign(0.22) TCGA-KB-A6F5-01 11 397294 397294 G A PKP3 Missense_Mutation p.G265R 0.32 deleterious(0.01) benign(0.016) TCGA-KB-A6F5-01 11 66460191 66460191 T G SPTBN2 Missense_Mutation p.Q1669P 0.10 deleterious(0) probably_damaging(0.999) TCGA-KB-A6F5-01 11 74460416 74460416 C T RNF169 Missense_Mutation p.P164L 0.12 tolerated(0.53) benign(0.041) TCGA-KB-A6F5-01 12 110353343 110353343 C T TCHP Missense_Mutation p.R486W 0.29 deleterious(0.02) benign(0.004) TCGA-KB-A6F5-01 12 113334526 113334526 G T RPH3A Missense_Mutation p.D676Y 0.12 deleterious(0) probably_damaging(0.992) TCGA-KB-A6F5-01 12 121476774 121476775 TC - OASL Missense_Mutation 0.34 TCGA-KB-A6F5-01 12 28116380 28116380 C T PTHLH Missense_Mutation p.R142Q 0.15 tolerated(0.08) probably_damaging(0.997) TCGA-KB-A6F5-01 12 70049317 70049317 G A BEST3 Silent p.S459S 0.29 TCGA-KB-A6F5-01 12 7639394 7639394 C T CD163 Missense_Mutation p.R720H 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-KB-A6F5-01 12 78522569 78522569 C A NAV3 Missense_Mutation p.T1455N 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-KB-A6F5-01 12 85450035 85450035 A C LRRIQ1 Silent p.A488A 0.21 TCGA-KB-A6F5-01 13 101755544 101755544 G A NALCN Silent p.S1012S 0.58 TCGA-KB-A6F5-01 13 35733343 35733343 C T NBEA Missense_Mutation p.P1012L 0.07 deleterious_low_confidence(0.04) benign(0.081) TCGA-KB-A6F5-01 13 43180943 43180943 T A TNFSF11 Missense_Mutation p.F281L 0.63 deleterious(0.04) possibly_damaging(0.5) TCGA-KB-A6F5-01 14 36219767 36219767 G A RALGAPA1 Missense_Mutation p.S311F 0.23 deleterious(0) probably_damaging(0.999) TCGA-KB-A6F5-01 15 24923222 24923222 C T NPAP1 Silent p.S736S 0.15 TCGA-KB-A6F5-01 15 40510745 40510745 T C BUB1B Missense_Mutation p.L980P 0.17 deleterious(0) probably_damaging(0.943) TCGA-KB-A6F5-01 15 65491078 65491078 G A CILP Missense_Mutation p.R516C 0.16 deleterious(0.03) probably_damaging(0.997) TCGA-KB-A6F5-01 15 69327705 69327705 C T NOX5 Silent p.L289L 0.18 TCGA-KB-A6F5-01 17 3386841 3386842 - C ASPA Frame_Shift_Ins p.L162Pfs*29 0.31 TCGA-KB-A6F5-01 17 73265546 73265546 C T MIF4GD Silent p.P29P 0.15 TCGA-KB-A6F5-01 17 7578204 7578204 A C TP53 Missense_Mutation p.S215R 0.38 deleterious(0) probably_damaging(1) TCGA-KB-A6F5-01 19 11339700 11339700 C T DOCK6 Silent p.E910E 0.18 TCGA-KB-A6F5-01 19 12089841 12089841 T G ZNF763 Missense_Mutation p.Y371D 0.22 deleterious(0) benign(0) TCGA-KB-A6F5-01 19 13247097 13247097 G A NACC1 Missense_Mutation p.R333H 0.31 deleterious(0.02) possibly_damaging(0.776) TCGA-KB-A6F5-01 19 15769188 15769188 C T CYP4F3 Silent p.D410D 0.13 TCGA-KB-A6F5-01 19 18779963 18779963 G A KLHL26 Missense_Mutation p.D586N 0.14 tolerated(0.11) possibly_damaging(0.62) TCGA-KB-A6F5-01 19 37155668 37155668 C G ZNF461 5'UTR 0.05 TCGA-KB-A6F5-01 19 37916862 37916862 T C ZNF569 Missense_Mutation p.Y49C 0.19 tolerated(0.25) benign(0) TCGA-KB-A6F5-01 19 3831861 3831861 C G ZFR2 Missense_Mutation p.C132S 0.48 tolerated(0.36) benign(0.001) TCGA-KB-A6F5-01 19 39306538 39306538 A G ECH1 Missense_Mutation p.Y281H 0.06 deleterious(0.02) probably_damaging(1) TCGA-KB-A6F5-01 19 40370258 40370258 G A FCGBP Silent p.V4136V 0.17 TCGA-KB-A6F5-01 19 49686349 49686349 G A TRPM4 Silent p.S541S 0.28 TCGA-KB-A6F5-01 19 7976135 7976135 C G MAP2K7 Missense_Mutation p.P286A 0.25 deleterious(0.01) possibly_damaging(0.462) TCGA-KB-A6F5-01 19 7976136 7976136 C A MAP2K7 Missense_Mutation p.P286H 0.25 deleterious(0) probably_damaging(0.967) TCGA-KB-A6F5-01 1 109811235 109811235 C T CELSR2 Silent p.D2117D 0.09 TCGA-KB-A6F5-01 1 114680471 114680471 G A SYT6 Silent p.Y154Y 0.03 TCGA-KB-A6F5-01 1 117158924 117158924 G A IGSF3 Nonsense_Mutation p.R67* 0.12 TCGA-KB-A6F5-01 1 155340378 155340378 C A ASH1L Silent p.G2201G 0.15 TCGA-KB-A6F5-01 1 155340379 155340379 C G ASH1L Missense_Mutation p.G2201A 0.16 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-KB-A6F5-01 1 159858160 159858160 C T CCDC19 Silent p.K133K 0.34 TCGA-KB-A6F5-01 1 167400918 167400918 T C CD247 Silent p.%3D 0.32 TCGA-KB-A6F5-01 1 200843100 200843100 G A GPR25 Missense_Mutation p.R312H 0.18 tolerated(0.23) benign(0.198) TCGA-KB-A6F5-01 1 208061155 208061155 G A CD34 Silent p.N362N 0.39 TCGA-KB-A6F5-01 1 222695822 222695822 G A HHIPL2 3'UTR 0.18 TCGA-KB-A6F5-01 1 22927505 22927505 T C EPHA8 Missense_Mutation p.F885L 0.17 deleterious(0.02) possibly_damaging(0.663) TCGA-KB-A6F5-01 1 233353645 233353645 G A PCNXL2 Silent p.H897H 0.09 TCGA-KB-A6F5-01 1 24201479 24201479 C A CNR2 Missense_Mutation p.G210V 0.13 tolerated(1) benign(0.052) TCGA-KB-A6F5-01 1 248569442 248569442 A G OR2T1 Silent p.V49V 0.32 TCGA-KB-A6F5-01 1 861173 861173 G A SAMD11 5'UTR 0.22 TCGA-KB-A6F5-01 20 10393562 10393562 T G MKKS Missense_Mutation p.I201L 0.10 tolerated(0.11) benign(0.247) TCGA-KB-A6F5-01 20 36993355 36993355 C T LBP Silent p.S290S 0.20 TCGA-KB-A6F5-01 22 19121974 19121974 C A DGCR14 Missense_Mutation p.G389V 0.25 tolerated(0.1) probably_damaging(1) TCGA-KB-A6F5-01 22 19121975 19121975 C T DGCR14 Missense_Mutation p.G389S 0.26 tolerated(0.58) probably_damaging(1) TCGA-KB-A6F5-01 2 107460208 107460208 C A ST6GAL2 Missense_Mutation p.A76S 0.14 benign(0.008) TCGA-KB-A6F5-01 2 118766205 118766205 A G CCDC93 Silent p.N24N 0.24 TCGA-KB-A6F5-01 2 14774893 14774893 G A FAM84A Missense_Mutation p.D264N 0.37 deleterious(0) benign(0.077) TCGA-KB-A6F5-01 2 231115697 231115697 G A SP140 Silent p.E326E 0.21 TCGA-KB-A6F5-01 3 194079931 194079931 C T LRRC15 3'UTR 0.75 TCGA-KB-A6F5-01 3 64133054 64133054 G A PRICKLE2 Missense_Mutation p.P371L 0.36 tolerated(0.09) benign(0.268) TCGA-KB-A6F5-01 4 153253817 153253817 G A FBXW7 Nonsense_Mutation p.Q306* 0.33 TCGA-KB-A6F5-01 4 184615858 184615858 T C TRAPPC11 Silent p.I870I 0.15 TCGA-KB-A6F5-01 5 115298942 115298942 G A AQPEP Missense_Mutation p.G210S 0.40 deleterious(0.01) possibly_damaging(0.859) TCGA-KB-A6F5-01 5 134190926 134190926 C T C5orf24 Silent p.T112T 0.08 TCGA-KB-A6F5-01 5 139931718 139931718 G A SRA1 Missense_Mutation p.P80L 0.17 tolerated(0.22) benign(0.02) TCGA-KB-A6F5-01 5 156723745 156723745 C T CYFIP2 Missense_Mutation p.P91L 0.18 deleterious(0) possibly_damaging(0.888) TCGA-KB-A6F5-01 5 171765919 171765919 C T SH3PXD2B Silent p.P730P 0.21 TCGA-KB-A6F5-01 5 179247911 179247911 C G SQSTM1 5'UTR 0.17 TCGA-KB-A6F5-01 6 131921302 131921302 T - MED23 Frame_Shift_Del p.D699Vfs*22 0.25 TCGA-KB-A6F5-01 6 50696968 50696968 T C TFAP2D Silent p.L276L 0.19 TCGA-KB-A6F5-01 7 64254856 64254856 C T ZNF138 5'UTR 0.25 TCGA-KB-A6F5-01 8 3000165 3000165 G A CSMD1 Silent p.T2021T 0.22 TCGA-KB-A6F5-01 8 35406971 35406971 G A UNC5D Missense_Mutation p.G89S 0.16 tolerated(0.23) probably_damaging(0.975) TCGA-KB-A6F5-01 8 67479131 67479131 A G MYBL1 Missense_Mutation p.Y609H 0.17 tolerated(0.21) possibly_damaging(0.853) TCGA-KB-A6F5-01 8 69017646 69017646 C T PREX2 Intron 0.25 TCGA-KB-A6F5-01 8 97172784 97172784 C T GDF6 Missense_Mutation p.R46H 0.12 tolerated(0.12) probably_damaging(0.974) TCGA-KB-A6F5-01 9 127265656 127265656 C T NR5A1 Missense_Mutation p.E7K 0.32 tolerated(0.29) benign(0.029) TCGA-KB-A6F5-01 9 134136360 134136360 G A FAM78A Missense_Mutation p.P234L 0.14 deleterious(0.04) probably_damaging(0.999) TCGA-KB-A6F5-01 9 139399547 139399547 G A NOTCH1 Silent p.Y1532Y 0.29 TCGA-KB-A6F5-01 X 100615077 100615077 C G BTK Missense_Mutation p.E280Q 0.12 tolerated(0.21) benign(0.009) TCGA-KB-A6F5-01 X 104728370 104728371 - T IL1RAPL2 Frame_Shift_Ins p.Q256Pfs*4 0.38 TCGA-KB-A6F5-01 X 23929973 23929973 G A CXorf58 Silent p.A72A 0.53 TCGA-KB-A6F5-01 X 69176914 69176914 C T EDA Missense_Mutation p.P145L 0.44 tolerated_low_confidence(0.81) unknown(0) TCGA-KB-A6F7-01 10 131665478 131665478 G A EBF3 Silent p.G313G 0.47 TCGA-KB-A6F7-01 10 28270418 28270418 A C ARMC4 Missense_Mutation p.F305V 0.13 deleterious(0.01) probably_damaging(0.984) TCGA-KB-A6F7-01 10 64135979 64135979 C A ZNF365 Missense_Mutation p.S9R 0.09 deleterious_low_confidence(0) possibly_damaging(0.843) TCGA-KB-A6F7-01 10 6472894 6472894 C T PRKCQ Missense_Mutation p.V615M 0.40 tolerated(0.05) possibly_damaging(0.612) TCGA-KB-A6F7-01 10 88659639 88659640 - TGTCA BMPR1A Frame_Shift_Ins p.I143Mfs*3 0.24 TCGA-KB-A6F7-01 11 108196196 108196196 A G ATM Silent p.R2244R 0.06 TCGA-KB-A6F7-01 11 123887117 123887117 C T OR10G4 Missense_Mutation p.T279M 0.23 deleterious(0) probably_damaging(0.939) TCGA-KB-A6F7-01 11 126294781 126294781 G A KIRREL3 Silent p.N677N 0.10 TCGA-KB-A6F7-01 11 22770786 22770786 A G GAS2 Silent p.T198T 0.08 TCGA-KB-A6F7-01 11 33360383 33360383 A T HIPK3 Silent p.V474V 0.05 TCGA-KB-A6F7-01 11 56237511 56237511 G C OR5M3 Missense_Mutation p.L155V 0.08 tolerated(0.11) benign(0.031) TCGA-KB-A6F7-01 11 58892180 58892180 C A FAM111B Missense_Mutation p.L204I 0.05 deleterious(0.04) benign(0.028) TCGA-KB-A6F7-01 11 94917632 94917633 TT - SESN3 Frame_Shift_Del p.L298Ffs*17 0.14 TCGA-KB-A6F7-01 12 130856119 130856119 G T PIWIL1 Silent p.L854L 0.08 TCGA-KB-A6F7-01 12 53225274 53225274 G A KRT79 Missense_Mutation p.T205M 0.33 deleterious(0.01) benign(0.172) TCGA-KB-A6F7-01 12 6646855 6646855 A G GAPDH Missense_Mutation p.T211A 0.26 deleterious_low_confidence(0.01) benign(0.01) TCGA-KB-A6F7-01 12 77252692 77252692 G C CSRP2 3'UTR 0.27 TCGA-KB-A6F7-01 13 113030732 113030732 C A SPACA7 Nonsense_Mutation p.C11* 0.08 TCGA-KB-A6F7-01 13 25826019 25826019 C T MTMR6 Missense_Mutation p.E484K 0.13 tolerated(0.63) benign(0.002) TCGA-KB-A6F7-01 13 84454800 84454800 A - SLITRK1 Frame_Shift_Del p.F281Lfs*45 0.12 TCGA-KB-A6F7-01 14 63174581 63174581 C T KCNH5 Missense_Mutation p.S871N 0.10 deleterious_low_confidence(0) benign(0.398) TCGA-KB-A6F7-01 14 63174723 63174727 TCTCC - KCNH5 Frame_Shift_Del p.E823Kfs*6 0.11 TCGA-KB-A6F7-01 14 64560097 64560097 G A SYNE2 Missense_Mutation p.E4003K 0.13 possibly_damaging(0.886) TCGA-KB-A6F7-01 14 70713990 70713992 CAC AA ADAM21P1 RNA 0.08 TCGA-KB-A6F7-01 15 24923259 24923259 C T NPAP1 Missense_Mutation p.P749S 0.15 tolerated(0.12) benign(0.133) TCGA-KB-A6F7-01 15 43658446 43658446 G A ZSCAN29 Missense_Mutation p.P362S 0.15 tolerated(0.17) benign(0.11) TCGA-KB-A6F7-01 15 45408874 45408874 C T DUOXA2 Silent p.C167C 0.20 TCGA-KB-A6F7-01 15 65871770 65871770 A C VWA9 Silent p.S454S 0.10 TCGA-KB-A6F7-01 15 85327539 85327539 A G ZNF592 Missense_Mutation p.K545E 0.10 deleterious(0.01) possibly_damaging(0.456) TCGA-KB-A6F7-01 15 86807659 86807659 G T AGBL1 Silent p.V373V 0.12 TCGA-KB-A6F7-01 15 91461481 91461481 T A MAN2A2 Missense_Mutation p.Y1018N 0.05 tolerated(0.21) benign(0.189) TCGA-KB-A6F7-01 16 1034859 1034859 G A SOX8 Missense_Mutation p.E272K 0.24 deleterious(0) possibly_damaging(0.608) TCGA-KB-A6F7-01 16 26147374 26147374 G T HS3ST4 Missense_Mutation p.K392N 0.09 deleterious(0) probably_damaging(1) TCGA-KB-A6F7-01 16 29855978 29855978 G A MVP Missense_Mutation p.R600H 0.31 deleterious(0.05) probably_damaging(0.997) TCGA-KB-A6F7-01 16 3350502 3350502 C G TIGD7 Missense_Mutation p.S38T 0.16 deleterious(0.03) possibly_damaging(0.788) TCGA-KB-A6F7-01 16 4432313 4432313 G T VASN Missense_Mutation p.G479W 0.23 deleterious(0) possibly_damaging(0.844) TCGA-KB-A6F7-01 16 4511878 4511878 G C NMRAL1 Missense_Mutation p.P268R 0.05 deleterious(0.01) probably_damaging(0.994) TCGA-KB-A6F7-01 16 53190619 53190619 T C CHD9 Silent p.H206H 0.36 TCGA-KB-A6F7-01 16 72110570 72110570 A G HPR Missense_Mutation p.N213D 0.44 tolerated(1) benign(0.001) TCGA-KB-A6F7-01 16 89965030 89965030 C T TCF25 Missense_Mutation p.A363V 0.36 deleterious(0) probably_damaging(0.999) TCGA-KB-A6F7-01 17 40871153 40871153 T C EZH1 Missense_Mutation p.E246G 0.08 deleterious(0.03) benign(0.172) TCGA-KB-A6F7-01 17 4996147 4996147 G T ZFP3 Nonsense_Mutation p.E450* 0.31 TCGA-KB-A6F7-01 17 60040165 60040165 A G MED13 Missense_Mutation p.L1671P 0.24 tolerated(0.07) probably_damaging(0.996) TCGA-KB-A6F7-01 17 76450629 76450629 G A DNAH17 Silent p.D3429D 0.12 TCGA-KB-A6F7-01 17 8172066 8172066 G T PFAS Missense_Mutation p.G1200W 0.13 deleterious(0) probably_damaging(0.999) TCGA-KB-A6F7-01 18 19995825 19995825 G A CTAGE1 Silent p.P650P 0.19 TCGA-KB-A6F7-01 18 48591900 48591900 G T SMAD4 Missense_Mutation p.D355Y 0.35 deleterious(0) probably_damaging(1) TCGA-KB-A6F7-01 19 36498123 36498123 C A SYNE4 Silent p.L109L 0.33 TCGA-KB-A6F7-01 19 44112042 44112042 G A ZNF428 Silent p.R98R 0.14 TCGA-KB-A6F7-01 19 56953039 56953039 G A ZNF667 Missense_Mutation p.P442L 0.15 deleterious(0) probably_damaging(0.998) TCGA-KB-A6F7-01 19 58190339 58190339 C T ZSCAN4 3'UTR 0.09 TCGA-KB-A6F7-01 19 9010666 9010666 A G MUC16 Missense_Mutation p.S12999P 0.33 possibly_damaging(0.822) TCGA-KB-A6F7-01 1 10192505 10192505 G A UBE4B Missense_Mutation p.V664I 0.12 tolerated(0.24) benign(0.206) TCGA-KB-A6F7-01 1 109823568 109823568 A T PSRC1 Missense_Mutation p.S245R 0.32 deleterious(0.01) probably_damaging(0.95) TCGA-KB-A6F7-01 1 153991488 153991488 G - NUP210L Frame_Shift_Del p.T1525Mfs*3 0.11 TCGA-KB-A6F7-01 1 15541793 15541794 - G TMEM51 Frame_Shift_Ins p.A72Gfs*17 0.14 TCGA-KB-A6F7-01 1 15911273 15911273 C A AGMAT Missense_Mutation p.V64L 0.36 tolerated(0.74) benign(0.003) TCGA-KB-A6F7-01 1 166985522 166985522 G A MAEL Splice_Site p.X303_splice 0.10 TCGA-KB-A6F7-01 1 169952006 169952006 A T KIFAP3 Missense_Mutation p.D503E 0.39 tolerated(0.51) benign(0.012) TCGA-KB-A6F7-01 1 173833335 173833335 T A ZBTB37 5'Flank 0.24 TCGA-KB-A6F7-01 1 186413559 186413559 A G PDC Missense_Mutation p.M98T 0.10 deleterious(0) probably_damaging(0.994) TCGA-KB-A6F7-01 1 198685920 198685920 G A PTPRC Silent p.V467V 0.07 TCGA-KB-A6F7-01 1 203150364 203150364 G A CHI3L1 Missense_Mutation p.R213C 0.07 deleterious(0) possibly_damaging(0.706) TCGA-KB-A6F7-01 1 216498831 216498831 A T USH2A Missense_Mutation p.I320N 0.16 probably_damaging(0.994) TCGA-KB-A6F7-01 1 240071671 240071671 A C CHRM3 Missense_Mutation p.K307T 0.31 tolerated(0.42) benign(0.009) TCGA-KB-A6F7-01 1 27058048 27058048 C T ARID1A Nonsense_Mutation p.Q586* 0.44 TCGA-KB-A6F7-01 1 68611569 68611569 G C WLS Missense_Mutation p.R419G 0.16 deleterious(0) probably_damaging(0.999) TCGA-KB-A6F7-01 1 70899633 70899633 G T CTH Splice_Site p.X333_splice 0.23 TCGA-KB-A6F7-01 1 89448733 89448733 G T RBMXL1 Silent p.G259G 0.07 TCGA-KB-A6F7-01 20 1145793 1145793 G A PSMF1 3'UTR 0.17 TCGA-KB-A6F7-01 20 23066317 23066317 G A CD93 Silent p.P171P 0.25 TCGA-KB-A6F7-01 20 31606879 31606879 C A BPIFB2 Missense_Mutation p.D289E 0.23 tolerated(0.12) benign(0.093) TCGA-KB-A6F7-01 20 36031709 36031709 A G SRC Missense_Mutation p.E513G 0.09 deleterious(0) possibly_damaging(0.503) TCGA-KB-A6F7-01 22 19223386 19223386 C A CLTCL1 Missense_Mutation p.A268S 0.10 tolerated(0.66) benign(0.001) TCGA-KB-A6F7-01 22 29884965 29884965 G T NEFH Missense_Mutation p.V446L 0.17 tolerated(0.08) unknown(0) TCGA-KB-A6F7-01 2 119750742 119750742 G T MARCO Missense_Mutation p.R432L 0.29 deleterious(0) unknown(0) TCGA-KB-A6F7-01 2 152466520 152466520 T G NEB Silent p.R4045R 0.11 TCGA-KB-A6F7-01 2 170371206 170371206 G T KLHL41 Missense_Mutation p.E411D 0.09 tolerated(0.14) benign(0.001) TCGA-KB-A6F7-01 2 170488304 170488304 C G PPIG Missense_Mutation p.L264V 0.26 tolerated(0.29) unknown(0) TCGA-KB-A6F7-01 2 173894949 173894949 C T RAPGEF4 Silent p.N872N 0.24 TCGA-KB-A6F7-01 2 32370026 32370026 G C SPAST Missense_Mutation p.G546A 0.09 tolerated(0.09) benign(0.148) TCGA-KB-A6F7-01 2 55464532 55464532 T G MTIF2 Missense_Mutation p.T635P 0.10 deleterious(0.01) possibly_damaging(0.598) TCGA-KB-A6F7-01 2 74043291 74043291 A C C2orf78 Missense_Mutation p.K647N 0.36 tolerated(0.06) possibly_damaging(0.455) TCGA-KB-A6F7-01 3 10960116 10960116 C A SLC6A11 Silent p.P366P 0.21 TCGA-KB-A6F7-01 3 1337472 1337472 A G CNTN6 Silent p.L214L 0.13 TCGA-KB-A6F7-01 3 136646967 136646967 C T NCK1 Nonsense_Mutation p.R42* 0.10 TCGA-KB-A6F7-01 3 136714377 136714377 G A IL20RB Silent p.V268V 0.09 TCGA-KB-A6F7-01 3 137781750 137781750 C G DZIP1L Missense_Mutation p.E738Q 0.11 tolerated(0.15) benign(0.035) TCGA-KB-A6F7-01 3 160786805 160786805 C G PPM1L Missense_Mutation p.R315G 0.08 tolerated(0.3) benign(0.378) TCGA-KB-A6F7-01 3 187416207 187416207 T G RTP2 3'UTR 0.29 TCGA-KB-A6F7-01 3 197401545 197401545 G T KIAA0226 3'Flank 0.19 TCGA-KB-A6F7-01 3 39108243 39108243 G A WDR48 Missense_Mutation p.V120I 0.39 tolerated(0.06) probably_damaging(0.98) TCGA-KB-A6F7-01 3 58111404 58111404 A T FLNB Missense_Mutation p.Q1332L 0.08 deleterious(0.02) benign(0.008) TCGA-KB-A6F7-01 4 107846967 107846967 C T DKK2 Missense_Mutation p.R121H 0.06 tolerated(0.44) probably_damaging(0.997) TCGA-KB-A6F7-01 4 109664983 109664983 C T ETNPPL Missense_Mutation p.E445K 0.13 tolerated(0.48) benign(0.002) TCGA-KB-A6F7-01 4 76489417 76489417 C T C4orf26 Nonsense_Mutation p.R69* 0.13 TCGA-KB-A6F7-01 5 139725639 139725639 A C HBEGF Missense_Mutation p.L26R 0.26 deleterious(0) probably_damaging(0.994) TCGA-KB-A6F7-01 5 149247320 149247320 G T PDE6A Missense_Mutation p.L748M 0.24 deleterious(0.01) probably_damaging(0.998) TCGA-KB-A6F7-01 5 151051233 151051233 G T SPARC Nonsense_Mutation p.C77* 0.13 TCGA-KB-A6F7-01 5 176314297 176314297 A G HK3 Missense_Mutation p.F548L 0.10 deleterious(0.03) probably_damaging(1) TCGA-KB-A6F7-01 5 37016190 37016190 T A NIPBL Missense_Mutation p.F1565Y 0.15 deleterious(0.01) probably_damaging(0.993) TCGA-KB-A6F7-01 6 123318877 123318877 C A CLVS2 5'UTR 0.10 TCGA-KB-A6F7-01 6 152560818 152560818 A G SYNE1 Silent p.S6639S 0.23 TCGA-KB-A6F7-01 6 168927117 168927117 C T SMOC2 Silent p.D116D 0.07 TCGA-KB-A6F7-01 6 29640633 29640633 T G ZFP57 Missense_Mutation p.K419Q 0.10 tolerated(0.11) benign(0.426) TCGA-KB-A6F7-01 6 30658860 30658860 C T NRM 5'UTR 0.70 TCGA-KB-A6F7-01 6 31833680 31833680 G A SLC44A4 Missense_Mutation p.P486L 0.09 deleterious(0) probably_damaging(0.992) TCGA-KB-A6F7-01 6 4716083 4716083 C A CDYL Missense_Mutation p.P24Q 0.10 deleterious_low_confidence(0) benign(0) TCGA-KB-A6F7-01 6 4952584 4952584 G A CDYL Missense_Mutation p.G473R 0.40 tolerated(0.52) benign(0.07) TCGA-KB-A6F7-01 7 110303717 110303717 G T IMMP2L Missense_Mutation p.Q157K 0.08 tolerated(0.19) benign(0.034) TCGA-KB-A6F7-01 7 148947364 148947364 G A ZNF212 Missense_Mutation p.A47T 0.20 deleterious(0.01) probably_damaging(1) TCGA-KB-A6F7-01 7 150730702 150730726 GGCTACCGCAGCTCCTCCCTCCTCC - ABCB8 Frame_Shift_Del p.Y37Pfs*18 0.22 TCGA-KB-A6F7-01 7 150835321 150835321 C A AGAP3 Missense_Mutation p.H529Q 0.18 tolerated(0.45) benign(0.087) TCGA-KB-A6F7-01 7 4285416 4285416 G C SDK1 Silent p.S2120S 0.09 TCGA-KB-A6F7-01 7 73534914 73534914 C T LIMK1 Silent p.G523G 0.07 TCGA-KB-A6F7-01 7 86522401 86522401 A T KIAA1324L Missense_Mutation p.W901R 0.27 deleterious(0.02) probably_damaging(0.995) TCGA-KB-A6F7-01 7 86522402 86522402 C A KIAA1324L Silent p.V900V 0.28 TCGA-KB-A6F7-01 7 87225104 87225104 G T ABCB1 Missense_Mutation p.P32Q 0.08 tolerated(0.54) benign(0.314) TCGA-KB-A6F7-01 7 92730872 92730872 C G SAMD9 Missense_Mutation p.Q1513H 0.11 tolerated(0.1) benign(0.025) TCGA-KB-A6F7-01 8 143961062 143961062 C G CYP11B1 Missense_Mutation p.W56C 0.24 deleterious(0) benign(0.33) TCGA-KB-A6F7-01 8 19362917 19362917 A T CSGALNACT1 Nonsense_Mutation p.Y143* 0.12 TCGA-KB-A6F7-01 8 2967841 2967841 G A CSMD1 Silent p.N2149N 0.28 TCGA-KB-A6F7-01 8 41754013 41754013 C T ANK1 5'UTR 0.44 TCGA-KB-A6F7-01 8 49832582 49832582 C A SNAI2 Missense_Mutation p.K166N 0.06 deleterious(0) probably_damaging(0.999) TCGA-KB-A6F7-01 8 57079437 57079437 G A PLAG1 Missense_Mutation p.L290F 0.29 tolerated(0.06) probably_damaging(0.969) TCGA-KB-A6F7-01 9 104499894 104499894 C T GRIN3A Nonsense_Mutation p.W123* 0.09 TCGA-KB-A6F7-01 9 27949053 27949053 T C LINGO2 Silent p.K539K 0.10 TCGA-KB-A6F7-01 9 96857666 96857666 G T PTPDC1 Silent p.V226V 0.12 TCGA-KB-A6F7-01 X 139586495 139586515 GCGGCCGCGGCAGCGGCGGCG - SOX3 In_Frame_Del p.A242_A248del 0.55 TCGA-KB-A6F7-01 X 148044423 148044423 A C AFF2 Missense_Mutation p.T957P 0.43 tolerated(0.07) benign(0.102) TCGA-KB-A6F7-01 X 47429312 47429312 G T ARAF Missense_Mutation p.M480I 0.23 deleterious(0) probably_damaging(0.915) TCGA-KB-A6F7-01 X 47429313 47429313 C T ARAF Nonsense_Mutation p.Q481* 0.25 TCGA-KB-A6F7-01 X 48839839 48839839 C T GRIPAP1 Missense_Mutation p.R429Q 0.05 possibly_damaging(0.876) TCGA-KB-A93G-01 10 11963047 11963047 G C UPF2 3'UTR 0.11 TCGA-KB-A93G-01 11 115111138 115111138 C T CADM1 Missense_Mutation p.D43N 0.09 deleterious(0.04) possibly_damaging(0.568) TCGA-KB-A93G-01 11 1248368 1248368 G A MUC5B Missense_Mutation p.S190N 0.07 unknown(0) TCGA-KB-A93G-01 11 2161906 2161906 C T IGF2 Intron 0.21 TCGA-KB-A93G-01 11 22257799 22257799 T A ANO5 Missense_Mutation p.S247T 0.12 tolerated(0.69) benign(0.352) TCGA-KB-A93G-01 11 34137370 34137370 G A NAT10 Missense_Mutation p.D166N 0.09 deleterious(0) probably_damaging(0.967) TCGA-KB-A93G-01 12 100492156 100492156 G A UHRF1BP1L Missense_Mutation p.R168C 0.10 deleterious(0) probably_damaging(1) TCGA-KB-A93G-01 12 10280038 10280038 C T CLEC7A Intron 0.05 TCGA-KB-A93G-01 12 105534782 105534782 C T KIAA1033 Nonsense_Mutation p.R556* 0.07 TCGA-KB-A93G-01 12 52979836 52979836 C A KRT72 Missense_Mutation p.G489V 0.13 tolerated_low_confidence(0.26) possibly_damaging(0.717) TCGA-KB-A93G-01 12 60173506 60173506 G A SLC16A7 3'UTR 0.09 TCGA-KB-A93G-01 12 7639270 7639270 G T CD163 Silent p.G761G 0.09 TCGA-KB-A93G-01 12 7639374 7639374 G A CD163 Missense_Mutation p.R727C 0.09 deleterious(0.02) probably_damaging(0.977) TCGA-KB-A93G-01 14 106610545 106610545 G T IGHV3-15 Missense_Mutation p.A42E 0.08 deleterious_low_confidence(0.03) benign(0.19) TCGA-KB-A93G-01 14 107012997 107012997 C T IGHV3-49 Missense_Mutation p.A100T 0.06 deleterious_low_confidence(0.01) benign(0.002) TCGA-KB-A93G-01 14 20585590 20585590 C A OR4K17 Missense_Mutation p.L9I 0.09 deleterious_low_confidence(0) benign(0.096) TCGA-KB-A93G-01 14 23511762 23511762 C T PSMB11 Missense_Mutation p.R110W 0.06 deleterious(0) probably_damaging(1) TCGA-KB-A93G-01 14 23848306 23848306 C A CMTM5 Silent p.R116R 0.07 TCGA-KB-A93G-01 14 26917965 26917965 G T NOVA1 Missense_Mutation p.Q242K 0.10 tolerated(1) unknown(0) TCGA-KB-A93G-01 14 50583061 50583061 C G VCPKMT Silent p.S70S 0.16 TCGA-KB-A93G-01 14 68220822 68220822 C G ZFYVE26 Missense_Mutation p.G2365A 0.07 deleterious(0) probably_damaging(0.997) TCGA-KB-A93G-01 15 38811509 38811509 C T RASGRP1 Splice_Site p.X130_splice 0.09 TCGA-KB-A93G-01 15 51974745 51974745 A G SCG3 Silent p.A38A 0.08 TCGA-KB-A93G-01 15 57925903 57925903 C T GCOM1 Silent p.I299I 0.07 TCGA-KB-A93G-01 15 89417157 89417157 G T ACAN Missense_Mutation p.R2473L 0.05 deleterious(0) probably_damaging(0.999) TCGA-KB-A93G-01 15 91292955 91292955 G T BLM Missense_Mutation p.D153Y 0.05 deleterious(0) possibly_damaging(0.907) TCGA-KB-A93G-01 16 4748884 4748884 G A ANKS3 Missense_Mutation p.R490C 0.09 deleterious(0) probably_damaging(0.994) TCGA-KB-A93G-01 16 69366683 69366683 G A COG8 Missense_Mutation p.L506F 0.08 deleterious(0.03) benign(0.272) TCGA-KB-A93G-01 17 58234043 58234043 C A CA4 Missense_Mutation p.Q79K 0.07 tolerated(0.73) benign(0.068) TCGA-KB-A93G-01 17 62525494 62525494 A - CEP95 Frame_Shift_Del p.R467Gfs*26 0.10 TCGA-KB-A93G-01 17 63554249 63554249 G C AXIN2 Missense_Mutation p.Q164E 0.04 deleterious(0.02) probably_damaging(0.949) TCGA-KB-A93G-01 17 65688789 65688789 C T PITPNC1 Missense_Mutation p.P262S 0.06 tolerated(0.24) benign(0.009) TCGA-KB-A93G-01 17 7578413 7578413 C T TP53 Missense_Mutation p.V173M 0.15 deleterious(0.02) probably_damaging(1) TCGA-KB-A93G-01 17 7695607 7695607 G A DNAH2 Missense_Mutation p.R2364Q 0.08 benign(0.195) TCGA-KB-A93G-01 17 80788728 80788728 G A ZNF750 Missense_Mutation p.P488S 0.06 tolerated(0.42) benign(0.027) TCGA-KB-A93G-01 19 16982065 16982065 C T SIN3B Silent p.Y848Y 0.09 TCGA-KB-A93G-01 19 21992233 21992233 G T ZNF43 Nonsense_Mutation p.C202* 0.05 TCGA-KB-A93G-01 19 23414153 23414153 G A ZNF724P Silent p.V47V 0.07 TCGA-KB-A93G-01 19 23543219 23543219 G C ZNF91 Nonsense_Mutation p.Y854* 0.04 TCGA-KB-A93G-01 19 33350777 33350777 G A SLC7A9 Silent p.T281T 0.10 TCGA-KB-A93G-01 19 36110402 36110402 G A HAUS5 Missense_Mutation p.G419E 0.07 tolerated(0.41) benign(0.054) TCGA-KB-A93G-01 19 37620030 37620030 G A ZNF420 3'UTR 0.11 TCGA-KB-A93G-01 19 45774809 45774809 C T MARK4 Missense_Mutation p.S210L 0.05 deleterious(0) possibly_damaging(0.697) TCGA-KB-A93G-01 19 46307603 46307603 G A RSPH6A Silent p.Y520Y 0.13 TCGA-KB-A93G-01 19 47285646 47285646 A T SLC1A5 Missense_Mutation p.I273N 0.09 deleterious(0) probably_damaging(0.954) TCGA-KB-A93G-01 19 49619698 49619698 G A LIN7B Missense_Mutation p.R136H 0.12 deleterious(0) possibly_damaging(0.742) TCGA-KB-A93G-01 19 49894074 49894074 C T CCDC155 5'UTR 0.14 TCGA-KB-A93G-01 19 52195895 52195895 G C SPACA6P-AS RNA 0.10 TCGA-KB-A93G-01 19 55085958 55085958 C T LILRA2 Silent p.I87I 0.09 TCGA-KB-A93G-01 19 55750783 55750783 C T PPP6R1 Missense_Mutation p.E581K 0.07 deleterious(0) probably_damaging(0.955) TCGA-KB-A93G-01 19 55899351 55899351 C T RPL28 Missense_Mutation p.R87C 0.14 deleterious(0.02) benign(0.189) TCGA-KB-A93G-01 19 6697682 6697682 C T C3 Missense_Mutation p.R855Q 0.06 tolerated(0.65) benign(0.045) TCGA-KB-A93G-01 19 9047581 9047581 C A MUC16 Missense_Mutation p.W11350C 0.09 benign(0.003) TCGA-KB-A93G-01 1 10707901 10707901 C T CASZ1 Missense_Mutation p.A1152T 0.11 deleterious(0) possibly_damaging(0.908) TCGA-KB-A93G-01 1 110199431 110199431 G A GSTM4 Intron 0.07 TCGA-KB-A93G-01 1 114225544 114225544 G A MAGI3 Silent p.S1118S 0.12 TCGA-KB-A93G-01 1 158261885 158261885 G T CD1C Missense_Mutation p.V114L 0.04 tolerated(0.61) benign(0.002) TCGA-KB-A93G-01 1 158604389 158604389 C A SPTA1 Nonsense_Mutation p.E1837* 0.08 TCGA-KB-A93G-01 1 158812127 158812127 C G MNDA Missense_Mutation p.L62V 0.06 tolerated(0.85) benign(0.003) TCGA-KB-A93G-01 1 176915090 176915090 C A ASTN1 Missense_Mutation p.A741S 0.05 tolerated(0.85) benign(0.001) TCGA-KB-A93G-01 1 177001757 177001757 G A ASTN1 Missense_Mutation p.R234W 0.07 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-KB-A93G-01 1 19433165 19433165 C T UBR4 Silent p.L4097L 0.04 TCGA-KB-A93G-01 1 212965022 212965022 G C NSL1 Silent p.V28V 0.10 TCGA-KB-A93G-01 1 21929382 21929382 G A RAP1GAP Missense_Mutation p.P549S 0.16 deleterious(0.04) probably_damaging(0.923) TCGA-KB-A93G-01 1 237754064 237754064 C T RYR2 Missense_Mutation p.A1311V 0.07 benign(0.005) TCGA-KB-A93G-01 1 237778116 237778116 G C RYR2 Missense_Mutation p.M1896I 0.07 benign(0.218) TCGA-KB-A93G-01 1 247978534 247978534 G T OR14A16 Nonsense_Mutation p.Y166* 0.07 TCGA-KB-A93G-01 1 248224079 248224079 C A OR2L3 Missense_Mutation p.F32L 0.04 tolerated(1) benign(0) TCGA-KB-A93G-01 1 53282280 53282280 C T ZYG11B Nonsense_Mutation p.Q675* 0.12 TCGA-KB-A93G-01 1 75038610 75038610 C T C1orf173 Silent p.S928S 0.06 TCGA-KB-A93G-01 1 76226868 76226868 G A ACADM Missense_Mutation p.S340N 0.08 tolerated(0.09) benign(0.089) TCGA-KB-A93G-01 20 13280020 13280020 C T ISM1 Missense_Mutation p.R437W 0.05 deleterious(0) probably_damaging(1) TCGA-KB-A93G-01 20 31062420 31062420 G A C20orf112 Silent p.L31L 0.05 TCGA-KB-A93G-01 20 54823969 54823969 C T MC3R Missense_Mutation p.P24S 0.07 tolerated(0.3) benign(0.007) TCGA-KB-A93G-01 20 54972428 54972428 G A CSTF1 Missense_Mutation p.R112H 0.10 deleterious(0.02) benign(0.039) TCGA-KB-A93G-01 20 57042206 57042206 G T APCDD1L Missense_Mutation p.H233N 0.12 deleterious(0.02) possibly_damaging(0.653) TCGA-KB-A93G-01 20 5903729 5903729 G T CHGB Missense_Mutation p.E313D 0.08 tolerated(0.11) benign(0.093) TCGA-KB-A93G-01 21 31864198 31864198 G A KRTAP19-3 Silent p.G26G 0.10 TCGA-KB-A93G-01 21 41711119 41711119 G A DSCAM Silent p.D478D 0.07 TCGA-KB-A93G-01 22 19839752 19839752 A T C22orf29 Silent p.P11P 0.10 TCGA-KB-A93G-01 22 43617197 43617197 C T SCUBE1 Missense_Mutation p.A511T 0.15 tolerated(0.39) benign(0.001) TCGA-KB-A93G-01 2 1457485 1457485 G A TPO Missense_Mutation p.A168T 0.10 deleterious(0.03) probably_damaging(0.994) TCGA-KB-A93G-01 2 234854618 234854618 T G TRPM8 Missense_Mutation p.V273G 0.06 tolerated(0.09) benign(0.046) TCGA-KB-A93G-01 2 33505201 33505201 C T LTBP1 Nonsense_Mutation p.R1030* 0.05 TCGA-KB-A93G-01 2 74687615 74687615 G C WBP1 Missense_Mutation p.R206P 0.08 deleterious(0) probably_damaging(0.999) TCGA-KB-A93G-01 3 113184531 113184531 A C SPICE1 Missense_Mutation p.L419R 0.05 deleterious(0) probably_damaging(0.988) TCGA-KB-A93G-01 3 138738790 138738790 G A PRR23B Silent p.C238C 0.19 TCGA-KB-A93G-01 3 167189428 167189428 T A SERPINI2 Silent p.G65G 0.06 TCGA-KB-A93G-01 3 184021842 184021842 G A PSMD2 Missense_Mutation p.M477I 0.04 tolerated(0.84) benign(0.034) TCGA-KB-A93G-01 3 57303634 57303634 G A APPL1 Silent p.G683G 0.03 TCGA-KB-A93G-01 5 112157596 112157596 C T APC Missense_Mutation p.P439L 0.12 possibly_damaging(0.546) TCGA-KB-A93G-01 5 133480497 133480497 C T TCF7 Intron 0.09 TCGA-KB-A93G-01 5 13766224 13766224 C T DNAH5 Missense_Mutation p.R3321Q 0.17 benign(0.021) TCGA-KB-A93G-01 5 13885290 13885290 C A DNAH5 Missense_Mutation p.A931S 0.12 benign(0.364) TCGA-KB-A93G-01 5 140188792 140188792 C A PCDHA4 Missense_Mutation p.Q674K 0.06 deleterious_low_confidence(0.02) benign(0.09) TCGA-KB-A93G-01 5 140517175 140517175 C T PCDHB5 Missense_Mutation p.S720L 0.17 tolerated_low_confidence(0.05) benign(0.043) TCGA-KB-A93G-01 5 176884306 176884306 A G DBN1 3'UTR 0.14 TCGA-KB-A93G-01 5 177548112 177548112 G T N4BP3 Missense_Mutation p.R289L 0.15 deleterious(0) probably_damaging(0.913) TCGA-KB-A93G-01 5 40681933 40681933 G A PTGER4 Missense_Mutation p.V280M 0.34 deleterious(0) probably_damaging(0.928) TCGA-KB-A93G-01 6 10796390 10796390 G A MAK Silent p.I328I 0.05 TCGA-KB-A93G-01 6 152647726 152647726 G C SYNE1 Missense_Mutation p.Q5000E 0.12 benign(0.08) TCGA-KB-A93G-01 6 153311053 153311053 C A MTRF1L Nonsense_Mutation p.E374* 0.09 TCGA-KB-A93G-01 6 33245122 33245122 C T B3GALT4 5'UTR 0.06 TCGA-KB-A93G-01 6 33263862 33263862 C T RGL2 Silent p.T237T 0.05 TCGA-KB-A93G-01 6 69653726 69653726 C A BAI3 Missense_Mutation p.H345Q 0.07 deleterious(0) probably_damaging(0.941) TCGA-KB-A93G-01 6 88125515 88125515 G A C6ORF165 Missense_Mutation p.R132Q 0.08 tolerated(0.23) benign(0.041) TCGA-KB-A93G-01 6 89907861 89907861 G A GABRR1 Silent p.V150V 0.09 TCGA-KB-A93G-01 7 107557908 107557908 G A DLD Splice_Site p.X412_splice 0.09 TCGA-KB-A93G-01 7 108524277 108524277 C A C7orf66 Missense_Mutation p.M45I 0.04 tolerated_low_confidence(0.27) benign(0.216) TCGA-KB-A93G-01 7 37988477 37988477 T G EPDR1 Missense_Mutation p.V102G 0.11 deleterious(0) probably_damaging(0.926) TCGA-KB-A93G-01 8 142176444 142176444 C T DENND3 Missense_Mutation p.S490L 0.14 deleterious(0.03) probably_damaging(0.999) TCGA-KB-A93G-01 8 142487532 142487532 C A MROH5 3'UTR 0.11 TCGA-KB-A93G-01 8 144873882 144873882 C T SCRIB Missense_Mutation p.R1575K 0.11 probably_damaging(0.979) TCGA-KB-A93G-01 8 144887348 144887348 G A SCRIB Silent p.S868S 0.12 TCGA-KB-A93G-01 8 2944798 2944798 C A CSMD1 Missense_Mutation p.C2432F 0.14 probably_damaging(0.962) TCGA-KB-A93G-01 8 38184277 38184277 G A WHSC1L1 Missense_Mutation p.S560L 0.12 tolerated(0.13) benign(0.103) TCGA-KB-A93G-01 9 100413618 100413618 G T NCBP1 Missense_Mutation p.G341V 0.08 tolerated(0.48) benign(0.411) TCGA-KB-A93G-01 9 100843130 100843130 A - NANS Frame_Shift_Del p.I212Mfs*10 0.15 TCGA-KB-A93G-01 9 101706315 101706315 C T COL15A1 5'UTR 0.07 TCGA-KB-A93G-01 9 123686003 123686003 G A TRAF1 Missense_Mutation p.R70C 0.12 tolerated(0.18) benign(0.003) TCGA-KB-A93G-01 9 125033161 125033161 G A MRRF 5'UTR 0.08 TCGA-KB-A93G-01 9 130422319 130422319 C G STXBP1 Missense_Mutation p.S86C 0.12 tolerated(0.18) possibly_damaging(0.518) TCGA-KB-A93G-01 9 21077362 21077362 C A IFNB1 Silent p.V169V 0.04 TCGA-KB-A93G-01 9 34514437 34514437 C T DNAI1 Missense_Mutation p.H539Y 0.08 deleterious(0) probably_damaging(0.998) TCGA-KB-A93G-01 X 111697890 111697890 C A ZCCHC16 5'UTR 0.19 TCGA-KB-A93G-01 X 140984483 140984483 C G MAGEC3 Intron 0.19 TCGA-KB-A93G-01 X 50213279 50213279 C T DGKK RNA 0.19 TCGA-KB-A93G-01 X 51644767 51644767 G A MAGED1 Missense_Mutation p.R749H 0.20 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-KB-A93G-01 X 78010343 78010343 G T LPAR4 5'UTR 0.13 TCGA-KB-A93H-01 10 28228853 28228853 C T ARMC4 Silent p.Q690Q 0.12 TCGA-KB-A93H-01 10 35896737 35896737 G A GJD4 Missense_Mutation p.R99Q 0.32 tolerated(0.17) benign(0.364) TCGA-KB-A93H-01 10 38658925 38658925 A G HSD17B7P2 RNA 0.45 TCGA-KB-A93H-01 10 52390634 52390634 C T RP11-50E11.3 RNA 0.53 TCGA-KB-A93H-01 10 83635375 83635375 C T NRG3 Silent p.S93S 0.16 TCGA-KB-A93H-01 11 102565798 102565798 C T MMP27 Silent p.T311T 0.34 TCGA-KB-A93H-01 11 103814191 103814191 C T PDGFD Missense_Mutation p.R254Q 0.08 tolerated(0.05) benign(0.043) TCGA-KB-A93H-01 11 123909033 123909033 G A OR10G7 Missense_Mutation p.R226W 0.28 deleterious(0) probably_damaging(0.927) TCGA-KB-A93H-01 11 133714466 133714466 C A SPATA19 Nonsense_Mutation p.E69* 0.29 TCGA-KB-A93H-01 11 18637068 18637068 A C SPTY2D1 Silent p.P251P 0.27 TCGA-KB-A93H-01 11 18956355 18994272 11:18956355-18994272 - MRGPRX1 large deletion 0.29 TCGA-KB-A93H-01 11 18956391 18956391 A T MRGPRX1 5'UTR 0.25 TCGA-KB-A93H-01 11 18956412 18956412 C T MRGPRX1 5'UTR 0.29 TCGA-KB-A93H-01 11 22387154 22387154 G T SLC17A6 Missense_Mutation p.K270N 0.15 tolerated(0.51) benign(0.026) TCGA-KB-A93H-01 11 49175810 49175810 G T FOLH1 Missense_Mutation p.Q620K 0.34 tolerated(0.36) benign(0) TCGA-KB-A93H-01 11 49597953 49597953 T A RP11-707M1.1 RNA 0.19 TCGA-KB-A93H-01 11 51515616 51515616 T C OR4C46 Missense_Mutation p.L112P 0.11 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-KB-A93H-01 11 55340090 55340090 A G OR4C16 Missense_Mutation p.S163G 0.32 tolerated(0.27) possibly_damaging(0.734) TCGA-KB-A93H-01 11 55340342 55340342 T A OR4C16 Missense_Mutation p.L247M 0.19 deleterious(0.03) probably_damaging(0.961) TCGA-KB-A93H-01 11 607852 607852 C T PHRF1 Missense_Mutation p.T798M 0.30 deleterious(0) probably_damaging(1) TCGA-KB-A93H-01 11 62415248 62415248 A G INTS5 Silent p.N768N 0.51 TCGA-KB-A93H-01 11 66618540 66618540 G A PC Nonsense_Mutation p.R732* 0.24 TCGA-KB-A93H-01 11 88242625 88242625 C T GRM5 Missense_Mutation p.R925Q 0.19 deleterious_low_confidence(0.03) benign(0.228) TCGA-KB-A93H-01 11 89880524 89880524 C T NAALAD2 Missense_Mutation p.A74V 0.23 deleterious(0) probably_damaging(0.999) TCGA-KB-A93H-01 12 116422118 116422118 G A MED13L Silent p.R1466R 0.31 TCGA-KB-A93H-01 12 125397003 125397003 A C UBC Missense_Mutation p.Y439D 0.38 deleterious(0) benign(0.019) TCGA-KB-A93H-01 12 13103264 13103264 C T GPRC5D Missense_Mutation p.E19K 0.36 tolerated(0.44) benign(0.011) TCGA-KB-A93H-01 12 133363109 133363109 C T GOLGA3 Missense_Mutation p.R980Q 0.42 tolerated(0.16) benign(0.022) TCGA-KB-A93H-01 12 21926475 21926475 G A KCNJ8 Missense_Mutation p.R26C 0.16 deleterious(0.01) benign(0.446) TCGA-KB-A93H-01 12 34179553 34179553 A T ALG10 Silent p.P375P 0.31 TCGA-KB-A93H-01 12 40704414 40704414 T C LRRK2 Missense_Mutation p.L1500P 0.15 deleterious(0) probably_damaging(1) TCGA-KB-A93H-01 12 4855414 4855414 T C GALNT8 Missense_Mutation p.L388P 0.41 deleterious(0) probably_damaging(0.982) TCGA-KB-A93H-01 12 4920396 4920396 G T KCNA6 Missense_Mutation p.A397S 0.22 deleterious(0) probably_damaging(0.987) TCGA-KB-A93H-01 12 54676010 54676011 - C HNRNPA1 Frame_Shift_Ins p.R140Pfs*15 0.15 TCGA-KB-A93H-01 12 56478976 56478976 G A ERBB3 Intron 0.30 TCGA-KB-A93H-01 12 82750983 82750983 C T CCDC59 Missense_Mutation p.E74K 0.09 tolerated(0.22) benign(0.006) TCGA-KB-A93H-01 12 94772728 94772728 C T CCDC41 Missense_Mutation p.A214T 0.06 tolerated(0.39) benign(0.001) TCGA-KB-A93H-01 13 113960816 113960816 G A LAMP1 Silent p.A26A 0.12 TCGA-KB-A93H-01 13 19751212 19751212 T G TUBA3C Missense_Mutation p.K304T 0.06 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-KB-A93H-01 13 25017788 25017788 C T PARP4 Silent p.E1149E 0.12 TCGA-KB-A93H-01 13 26978320 26978320 A G CDK8 3'UTR 0.68 TCGA-KB-A93H-01 13 36686341 36686341 C T DCLK1 Missense_Mutation p.V130I 0.05 tolerated(0.06) unknown(0) TCGA-KB-A93H-01 13 38357213 38357213 G A TRPC4 Silent p.I86I 0.12 TCGA-KB-A93H-01 13 46638842 46638842 G A CPB2 Missense_Mutation p.A246V 0.11 tolerated(0.19) benign(0.001) TCGA-KB-A93H-01 13 58207391 58207391 C T PCDH17 Silent p.N237N 0.19 TCGA-KB-A93H-01 14 102483504 102483504 G A DYNC1H1 Missense_Mutation p.R2643H 0.36 probably_damaging(0.954) TCGA-KB-A93H-01 14 20586464 20586464 A C OR4K17 Missense_Mutation p.K300T 0.29 deleterious(0) probably_damaging(0.995) TCGA-KB-A93H-01 14 26917750 26917750 C A NOVA1 Silent p.V313V 0.34 TCGA-KB-A93H-01 14 29237049 29237049 G A FOXG1 Silent p.A188A 0.42 TCGA-KB-A93H-01 14 33015125 33015125 C T AKAP6 Silent p.S422S 0.18 TCGA-KB-A93H-01 15 25423763 25423763 G A SNORD115-6 5'Flank 0.40 TCGA-KB-A93H-01 15 44887457 44887457 C T SPG11 Silent p.K1545K 0.38 TCGA-KB-A93H-01 15 48063701 48063701 T C SEMA6D Silent p.L981L 0.22 TCGA-KB-A93H-01 15 48459562 48459562 G A MYEF2 Missense_Mutation p.A136V 0.13 deleterious(0.01) possibly_damaging(0.804) TCGA-KB-A93H-01 15 49531521 49531521 C G GALK2 Missense_Mutation p.A154G 0.32 deleterious(0.01) probably_damaging(0.935) TCGA-KB-A93H-01 15 53081682 53081682 G T ONECUT1 Missense_Mutation p.H134N 0.43 tolerated(0.16) benign(0.444) TCGA-KB-A93H-01 15 54306737 54306737 T G UNC13C Missense_Mutation p.L546R 0.23 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-KB-A93H-01 15 79382899 79382899 C A RASGRF1 5'UTR 0.46 TCGA-KB-A93H-01 15 84255792 84255792 C G SH3GL3 Missense_Mutation p.Q228E 0.27 deleterious(0.05) probably_damaging(0.989) TCGA-KB-A93H-01 15 85326494 85326494 G A ZNF592 Missense_Mutation p.M196I 0.48 tolerated(0.13) benign(0.008) TCGA-KB-A93H-01 16 11945299 11945299 G A RSL1D1 Missense_Mutation p.A24V 0.35 tolerated(0.19) unknown(0) TCGA-KB-A93H-01 16 16271445 16271445 G A ABCC6 Silent p.P818P 0.32 TCGA-KB-A93H-01 16 3613993 3613993 T G NLRC3 Missense_Mutation p.Q362H 0.45 tolerated(1) benign(0.002) TCGA-KB-A93H-01 16 50745371 50745371 A G NOD2 Missense_Mutation p.I517V 0.19 tolerated(0.63) benign(0.085) TCGA-KB-A93H-01 16 67574096 67574096 C T FAM65A Silent p.R205R 0.08 TCGA-KB-A93H-01 16 70603967 70603967 C T SF3B3 Missense_Mutation p.T1108M 0.60 deleterious(0.02) possibly_damaging(0.473) TCGA-KB-A93H-01 16 8895677 8895677 G A PMM2 Missense_Mutation p.D30N 0.50 tolerated(0.16) benign(0.001) TCGA-KB-A93H-01 17 19015791 19015791 C T SNORD3D RNA 0.14 TCGA-KB-A93H-01 17 19091487 19091487 G A SNORD3A RNA 0.17 TCGA-KB-A93H-01 17 27809280 27809280 C G TAOK1 Missense_Mutation p.S210C 0.19 deleterious(0) probably_damaging(1) TCGA-KB-A93H-01 17 27963540 27963541 - A SSH2 Frame_Shift_Ins p.E543* 0.31 TCGA-KB-A93H-01 17 41256955 41256955 C T BRCA1 Silent p.T77T 0.21 TCGA-KB-A93H-01 17 53046053 53046053 A G COX11 5'UTR 0.19 TCGA-KB-A93H-01 17 58091674 58091674 G A TBC1D3P1-DHX40P1 RNA 0.29 TCGA-KB-A93H-01 17 63822559 63822559 T G CEP112 Intron 0.35 TCGA-KB-A93H-01 17 7129588 7129588 G A DVL2 Missense_Mutation p.R603C 0.21 deleterious(0.03) possibly_damaging(0.898) TCGA-KB-A93H-01 17 7324752 7324752 G A SPEM1 Missense_Mutation p.R253Q 0.67 tolerated(0.3) benign(0.003) TCGA-KB-A93H-01 17 74289659 74289659 G A QRICH2 Silent p.V217V 0.40 TCGA-KB-A93H-01 17 7578527 7578527 A - TP53 Frame_Shift_Del p.C135Afs*35 0.37 TCGA-KB-A93H-01 18 65178999 65178999 T C DSEL Silent p.Q959Q 0.17 TCGA-KB-A93H-01 18 7008543 7008543 C A LAMA1 Missense_Mutation p.A1356S 0.78 deleterious(0) probably_damaging(0.999) TCGA-KB-A93H-01 19 1046386 1046386 C G ABCA7 Missense_Mutation p.P535A 0.43 deleterious(0) probably_damaging(0.964) TCGA-KB-A93H-01 19 12882099 12882099 G A HOOK2 Missense_Mutation p.A212V 0.70 tolerated(0.45) benign(0.003) TCGA-KB-A93H-01 19 17883333 17883333 C T FCHO1 Missense_Mutation p.S221L 0.17 tolerated(0.21) probably_damaging(0.999) TCGA-KB-A93H-01 19 19168372 19168372 G A ARMC6 Missense_Mutation p.D481N 0.77 deleterious(0) probably_damaging(1) TCGA-KB-A93H-01 19 21991063 21991063 T G ZNF43 Missense_Mutation p.K592N 0.27 deleterious(0.02) possibly_damaging(0.758) TCGA-KB-A93H-01 19 50548314 50548314 G A ZNF473 Missense_Mutation p.G205E 0.07 tolerated(0.77) probably_damaging(0.972) TCGA-KB-A93H-01 19 52216712 52216712 G A HAS1 Missense_Mutation p.R569W 0.78 deleterious(0) unknown(0) TCGA-KB-A93H-01 19 52447667 52447667 C G ZNF613 Missense_Mutation p.N177K 0.23 tolerated(1) benign(0) TCGA-KB-A93H-01 19 53056412 53056412 T A ZNF808 Missense_Mutation p.N81K 0.08 tolerated(0.28) probably_damaging(0.968) TCGA-KB-A93H-01 19 53456114 53456114 C T ZNF816 Missense_Mutation p.R27K 0.13 tolerated(0.19) benign(0.318) TCGA-KB-A93H-01 19 55144059 55144059 C G LILRB1 Missense_Mutation p.A269G 0.04 tolerated(0.32) benign(0.001) TCGA-KB-A93H-01 19 57051000 57051000 C T ZFP28 Missense_Mutation p.P72L 0.15 tolerated(0.78) benign(0.003) TCGA-KB-A93H-01 19 58596723 58596723 C T ZSCAN18 Missense_Mutation p.A344T 0.12 tolerated(0.51) benign(0.003) TCGA-KB-A93H-01 19 9069919 9069919 T G MUC16 Missense_Mutation p.T5843P 0.48 unknown(0) TCGA-KB-A93H-01 1 102462321 102462321 C T OLFM3 Missense_Mutation p.G18R 0.38 deleterious(0.01) benign(0.07) TCGA-KB-A93H-01 1 114952860 114952860 T C TRIM33 Missense_Mutation p.T714A 0.24 tolerated(0.62) benign(0.001) TCGA-KB-A93H-01 1 117561065 117561065 G A CD101 Missense_Mutation p.E634K 0.36 deleterious(0.01) probably_damaging(0.98) TCGA-KB-A93H-01 1 119964466 119964466 C T HSD3B2 Silent p.A114A 0.10 TCGA-KB-A93H-01 1 119964468 119964468 G C HSD3B2 Missense_Mutation p.S115T 0.09 tolerated(0.07) possibly_damaging(0.515) TCGA-KB-A93H-01 1 13716974 13716974 G T PRAMEF17 Missense_Mutation p.C154F 0.38 tolerated(0.06) benign(0.398) TCGA-KB-A93H-01 1 142713879 142713879 A C RP11-417J8.6 RNA 0.12 TCGA-KB-A93H-01 1 152648763 152648763 G T LCE2C Missense_Mutation p.C91F 0.39 deleterious_low_confidence(0) unknown(0) TCGA-KB-A93H-01 1 153391862 153391862 T A S100A7A 3'UTR 0.21 TCGA-KB-A93H-01 1 154520068 154520068 A C TDRD10 3'UTR 0.30 TCGA-KB-A93H-01 1 155252338 155252338 C T HCN3 Silent p.L139L 0.22 TCGA-KB-A93H-01 1 155327184 155327184 C T ASH1L Silent p.E2326E 0.40 TCGA-KB-A93H-01 1 157804319 157804319 T G CD5L Missense_Mutation p.K199T 0.15 deleterious(0.05) benign(0.001) TCGA-KB-A93H-01 1 158389834 158389834 A G OR10K2 Missense_Mutation p.S275P 0.12 deleterious(0) probably_damaging(1) TCGA-KB-A93H-01 1 158435878 158435878 A C OR10K1 Missense_Mutation p.H176P 0.18 deleterious(0.01) probably_damaging(1) TCGA-KB-A93H-01 1 163117164 163117164 G A RGS5 Missense_Mutation p.R176C 0.10 deleterious(0) probably_damaging(0.984) TCGA-KB-A93H-01 1 186329468 186329468 G A TPR Silent p.A376A 0.23 TCGA-KB-A93H-01 1 19062252 19062252 G A PAX7 Missense_Mutation p.D428N 0.25 deleterious_low_confidence(0) possibly_damaging(0.533) TCGA-KB-A93H-01 1 196254873 196254873 C A KCNT2 Missense_Mutation p.G871C 0.44 deleterious(0) probably_damaging(0.935) TCGA-KB-A93H-01 1 196977825 196977825 T G CFHR5 3'UTR 0.18 TCGA-KB-A93H-01 1 203690466 203690466 C T ATP2B4 Missense_Mutation p.R914C 0.28 deleterious(0) probably_damaging(0.961) TCGA-KB-A93H-01 1 204380497 204380497 G A PPP1R15B Missense_Mutation p.R15W 0.21 tolerated_low_confidence(0.15) benign(0.028) TCGA-KB-A93H-01 1 205277726 205277726 C T NUAK2 Missense_Mutation p.V163M 0.32 deleterious(0) probably_damaging(0.954) TCGA-KB-A93H-01 1 207225650 207225650 C T YOD1 5'Flank 0.22 TCGA-KB-A93H-01 1 214170676 214170676 G A PROX1 Silent p.S266S 0.32 TCGA-KB-A93H-01 1 218458751 218458751 A C RRP15 Silent p.V31V 0.28 TCGA-KB-A93H-01 1 228400250 228400250 C T OBSCN Missense_Mutation p.R256C 0.42 probably_damaging(0.999) TCGA-KB-A93H-01 1 247875170 247875170 T G OR6F1 Missense_Mutation p.E296D 0.20 tolerated(0.38) benign(0.007) TCGA-KB-A93H-01 1 248436641 248436641 A G OR2T33 Missense_Mutation p.V159A 0.21 tolerated(1) benign(0.001) TCGA-KB-A93H-01 1 33832789 33832789 C T PHC2 Missense_Mutation p.G302R 0.15 tolerated(0.07) probably_damaging(0.969) TCGA-KB-A93H-01 1 38227491 38227491 C T EPHA10 Missense_Mutation p.G146S 0.32 tolerated(0.1) benign(0.071) TCGA-KB-A93H-01 1 43042759 43042759 G A CCDC30 Silent p.T308T 0.12 TCGA-KB-A93H-01 1 45340437 45340437 C T EIF2B3 Missense_Mutation p.R372H 0.11 tolerated(0.5) benign(0.005) TCGA-KB-A93H-01 1 50666522 50666522 G A ELAVL4 Splice_Site p.X275_splice 0.42 TCGA-KB-A93H-01 1 57161776 57161776 C G PRKAA2 Silent p.L244L 0.12 TCGA-KB-A93H-01 1 70451968 70451968 A G LRRC7 Missense_Mutation p.K239R 0.21 deleterious(0.02) probably_damaging(0.972) TCGA-KB-A93H-01 1 82402504 82402504 A G LPHN2 Missense_Mutation p.Y127C 0.38 deleterious(0) probably_damaging(1) TCGA-KB-A93H-01 20 16348022 16348022 T G KIF16B Silent p.P1316P 0.22 TCGA-KB-A93H-01 20 21686893 21686893 C T PAX1 Intron 0.31 TCGA-KB-A93H-01 20 23029188 23029188 G A THBD Silent p.A318A 0.25 TCGA-KB-A93H-01 20 33578078 33578078 G A MYH7B Missense_Mutation p.A690T 0.10 possibly_damaging(0.87) TCGA-KB-A93H-01 20 39317172 39317172 C T MAFB Missense_Mutation p.A107T 0.15 deleterious(0) probably_damaging(0.989) TCGA-KB-A93H-01 20 41306611 41306611 G A PTPRT Silent p.L350L 0.17 TCGA-KB-A93H-01 20 56140450 56140450 G T PCK1 Missense_Mutation p.G487C 0.15 deleterious(0) probably_damaging(1) TCGA-KB-A93H-01 21 10951350 10951350 T C TPTE Missense_Mutation p.Y121C 0.26 tolerated(0.15) possibly_damaging(0.848) TCGA-KB-A93H-01 21 10951368 10951368 A G TPTE Missense_Mutation p.F115S 0.17 tolerated(0.17) benign(0.231) TCGA-KB-A93H-01 21 11039084 11039084 T A BAGE2 RNA 0.05 TCGA-KB-A93H-01 21 11039362 11039362 T C BAGE2 RNA 0.06 TCGA-KB-A93H-01 21 31933460 31933460 T A KRTAP19-7 Missense_Mutation p.H50L 0.35 tolerated_low_confidence(0.46) unknown(0) TCGA-KB-A93H-01 22 24085827 24085827 G A ZNF70 3'UTR 0.55 TCGA-KB-A93H-01 22 37770921 37770921 C T ELFN2 Silent p.P218P 0.56 TCGA-KB-A93H-01 22 51159604 51159604 C T SHANK3 Nonsense_Mutation p.R1131* 0.33 TCGA-KB-A93H-01 2 112722782 112722782 G A MERTK Missense_Mutation p.A258T 0.57 tolerated(0.33) benign(0.424) TCGA-KB-A93H-01 2 116573261 116573261 A G DPP10 Missense_Mutation p.K640E 0.26 tolerated(0.09) benign(0.008) TCGA-KB-A93H-01 2 120690111 120690111 G A PTPN4 Silent p.P394P 0.22 TCGA-KB-A93H-01 2 125555772 125555772 A G CNTNAP5 Missense_Mutation p.Y1030C 0.25 deleterious(0.02) probably_damaging(0.999) TCGA-KB-A93H-01 2 154334746 154334746 C T RPRM 3'UTR 0.50 TCGA-KB-A93H-01 2 176959216 176959216 G T HOXD13 Missense_Mutation p.A264S 0.17 tolerated(0.61) benign(0.04) TCGA-KB-A93H-01 2 179209065 179209065 T A OSBPL6 Missense_Mutation p.L347Q 0.15 tolerated(0.11) possibly_damaging(0.466) TCGA-KB-A93H-01 2 179643732 179643732 T G TTN Missense_Mutation p.E1359D 0.52 TCGA-KB-A93H-01 2 215674203 215674203 G A BARD1 Missense_Mutation p.R31C 0.15 tolerated_low_confidence(0.17) benign(0.001) TCGA-KB-A93H-01 2 217724753 217724753 G A TNP1 Missense_Mutation p.S2L 0.07 deleterious_low_confidence(0) benign(0.295) TCGA-KB-A93H-01 2 220286184 220286184 C T DES Silent p.A382A 0.20 TCGA-KB-A93H-01 2 60688577 60688577 G A BCL11A Silent p.D490D 0.32 TCGA-KB-A93H-01 2 7001321 7001321 A G CMPK2 Missense_Mutation p.V329A 0.12 deleterious(0) possibly_damaging(0.814) TCGA-KB-A93H-01 2 86292480 86292480 G A POLR1A Nonsense_Mutation p.R659* 0.29 TCGA-KB-A93H-01 3 113627805 113627805 G A GRAMD1C Missense_Mutation p.G264R 0.13 tolerated(0.15) benign(0.025) TCGA-KB-A93H-01 3 133672528 133672528 C T SLCO2A1 Missense_Mutation p.D235N 0.57 deleterious(0) probably_damaging(0.997) TCGA-KB-A93H-01 3 134911620 134911620 C T EPHB1 Silent p.I695I 0.12 TCGA-KB-A93H-01 3 147128514 147128514 C T ZIC1 Silent p.A205A 0.12 TCGA-KB-A93H-01 3 195400816 195400822 GGTCAGG TTGGTCGGA SDHAP2 RNA 0.11 TCGA-KB-A93H-01 3 24164532 24164532 C T THRB Missense_Mutation p.R410Q 0.77 deleterious(0.03) benign(0.134) TCGA-KB-A93H-01 3 47958155 47958155 T C MAP4 Missense_Mutation p.M388V 0.74 tolerated(0.11) benign(0.271) TCGA-KB-A93H-01 3 49362360 49362360 G A USP4 Silent p.N200N 0.72 TCGA-KB-A93H-01 3 73112843 73112843 T G PPP4R2 Missense_Mutation p.L147V 0.31 tolerated(0.56) benign(0.055) TCGA-KB-A93H-01 3 77693876 77693876 G T ROBO2 Missense_Mutation p.S1335I 0.18 deleterious(0.04) benign(0.403) TCGA-KB-A93H-01 4 119220008 119220008 C A PRSS12 Nonsense_Mutation p.E573* 0.54 TCGA-KB-A93H-01 4 154525047 154525047 C A KIAA0922 Silent p.I961I 0.27 TCGA-KB-A93H-01 4 155241937 155241937 G A DCHS2 Silent p.D1083D 0.20 TCGA-KB-A93H-01 4 160225565 160225565 C T RAPGEF2 Silent p.S44S 0.25 TCGA-KB-A93H-01 4 169362498 169362498 C T DDX60L Silent p.S428S 0.30 TCGA-KB-A93H-01 4 177046498 177046498 T A WDR17 Missense_Mutation p.I285K 0.18 deleterious(0) benign(0.375) TCGA-KB-A93H-01 4 183721137 183721137 C T TENM3 Missense_Mutation p.T2578M 0.33 deleterious(0) probably_damaging(0.93) TCGA-KB-A93H-01 4 185941756 185941756 G A HELT Missense_Mutation p.A272T 0.16 tolerated(0.23) benign(0.003) TCGA-KB-A93H-01 4 189012827 189012827 T C TRIML2 Silent p.K288K 0.20 TCGA-KB-A93H-01 4 189022282 189022282 C G TRIML2 Silent p.L86L 0.09 TCGA-KB-A93H-01 4 21950287 21950287 G A KCNIP4 5'UTR 0.21 TCGA-KB-A93H-01 4 30725052 30725052 C T PCDH7 Missense_Mutation p.R670W 0.29 deleterious(0) possibly_damaging(0.827) TCGA-KB-A93H-01 4 39864573 39864573 C A PDS5A Nonsense_Mutation p.E963* 0.42 TCGA-KB-A93H-01 4 4304406 4304406 G T ZBTB49 Silent p.V281V 0.12 TCGA-KB-A93H-01 4 46252519 46252519 A G GABRA2 Missense_Mutation p.S388P 0.13 tolerated(0.17) benign(0.078) TCGA-KB-A93H-01 4 47625688 47625688 G A CORIN Missense_Mutation p.P814S 0.21 deleterious(0) probably_damaging(1) TCGA-KB-A93H-01 4 62849313 62849313 A C LPHN3 Silent p.T1008T 0.32 TCGA-KB-A93H-01 4 9784508 9784508 C T DRD5 Silent p.R285R 0.25 TCGA-KB-A93H-01 5 120021887 120021887 A C PRR16 Missense_Mutation p.K110T 0.17 deleterious_low_confidence(0) possibly_damaging(0.843) TCGA-KB-A93H-01 5 1242943 1242943 C G SLC6A18 Missense_Mutation p.L366V 0.24 deleterious(0.04) probably_damaging(0.923) TCGA-KB-A93H-01 5 131310588 131310588 G C ACSL6 Missense_Mutation p.Q356E 0.36 tolerated(0.98) benign(0.011) TCGA-KB-A93H-01 5 13901431 13901431 C T DNAH5 Missense_Mutation p.R661H 0.70 possibly_damaging(0.766) TCGA-KB-A93H-01 5 140220950 140220950 T G PCDHA8 Missense_Mutation p.L15R 0.21 deleterious_low_confidence(0.04) benign(0.271) TCGA-KB-A93H-01 5 140503026 140503026 C A PCDHB4 Missense_Mutation p.N482K 0.13 deleterious(0) probably_damaging(0.998) TCGA-KB-A93H-01 5 140699074 140699074 G A TAF7 Missense_Mutation p.R180W 0.22 deleterious(0) possibly_damaging(0.855) TCGA-KB-A93H-01 5 140788456 140788456 A C PCDHGB6 Missense_Mutation p.E229D 0.30 deleterious(0.05) benign(0.014) TCGA-KB-A93H-01 5 153056615 153056615 G A GRIA1 Missense_Mutation p.R318Q 0.31 tolerated(0.17) benign(0.446) TCGA-KB-A93H-01 5 156346475 156346475 G T TIMD4 Missense_Mutation p.T377N 0.11 deleterious(0) probably_damaging(0.997) TCGA-KB-A93H-01 5 15935288 15935288 G A FBXL7 Intron 0.20 TCGA-KB-A93H-01 5 2749836 2749836 G A IRX2 Silent p.S105S 0.61 TCGA-KB-A93H-01 5 33649021 33649021 T C ADAMTS12 Missense_Mutation p.K462R 0.10 tolerated(0.11) probably_damaging(0.917) TCGA-KB-A93H-01 5 60188099 60188099 C T ERCC8 Intron 0.54 TCGA-KB-A93H-01 5 66429429 66429429 C T MAST4 Silent p.Y727Y 0.50 TCGA-KB-A93H-01 5 82835871 82835871 C G VCAN Missense_Mutation p.P2350R 0.58 tolerated(0.37) possibly_damaging(0.536) TCGA-KB-A93H-01 5 82836915 82836915 A C VCAN Missense_Mutation p.K2698T 0.17 tolerated(0.47) benign(0.004) TCGA-KB-A93H-01 6 112496640 112496640 A C LAMA4 Missense_Mutation p.L411R 0.27 deleterious(0.01) probably_damaging(0.979) TCGA-KB-A93H-01 6 147632661 147632661 T C STXBP5 Silent p.N381N 0.33 TCGA-KB-A93H-01 6 152712547 152712547 A G SYNE1 Silent p.L2623L 0.53 TCGA-KB-A93H-01 6 170865987 170865987 G A TBP 5'UTR 0.25 TCGA-KB-A93H-01 6 33156842 33156842 G A COL11A2 Missense_Mutation p.P119L 0.30 probably_damaging(0.989) TCGA-KB-A93H-01 6 35207532 35207532 T C SCUBE3 Missense_Mutation p.I278T 0.15 tolerated(0.06) probably_damaging(0.992) TCGA-KB-A93H-01 6 50016315 50016315 G T DEFB112 Nonsense_Mutation p.S17* 0.25 TCGA-KB-A93H-01 6 70070764 70070764 T C BAI3 Missense_Mutation p.L1200P 0.55 deleterious(0) probably_damaging(0.981) TCGA-KB-A93H-01 7 103143582 103143582 G A RELN Silent p.V2790V 0.33 TCGA-KB-A93H-01 7 112724780 112724780 T A GPR85 5'UTR 0.29 TCGA-KB-A93H-01 7 150939642 150939642 C T SMARCD3 Silent p.A168A 0.39 TCGA-KB-A93H-01 7 27134208 27134208 G A HOXA1 Missense_Mutation p.R287C 0.22 deleterious(0) probably_damaging(0.988) TCGA-KB-A93H-01 7 37936667 37936667 A G NME8 Silent p.R580R 0.33 TCGA-KB-A93H-01 7 42007408 42007408 T C GLI3 Silent p.G739G 0.57 TCGA-KB-A93H-01 7 43447195 43447195 T A HECW1 Missense_Mutation p.F222L 0.52 deleterious(0) probably_damaging(0.999) TCGA-KB-A93H-01 7 80394547 80394547 A G SEMA3C Missense_Mutation p.V456A 0.14 deleterious(0) possibly_damaging(0.454) TCGA-KB-A93H-01 7 87370879 87370879 T G RUNDC3B Missense_Mutation p.L222V 0.32 deleterious(0) probably_damaging(0.947) TCGA-KB-A93H-01 7 98254444 98254444 G A NPTX2 Missense_Mutation p.G285D 0.38 deleterious(0.01) possibly_damaging(0.558) TCGA-KB-A93H-01 8 105260983 105260983 G A RIMS2 Silent p.L1177L 0.13 TCGA-KB-A93H-01 8 106813454 106813454 C G ZFPM2 Missense_Mutation p.Q382E 0.07 tolerated(0.24) probably_damaging(0.977) TCGA-KB-A93H-01 8 106813554 106813554 T G ZFPM2 Missense_Mutation p.L415W 0.15 deleterious(0.03) possibly_damaging(0.841) TCGA-KB-A93H-01 8 121467779 121467779 T C MTBP Missense_Mutation p.Y197H 0.52 tolerated(1) benign(0) TCGA-KB-A93H-01 8 125601952 125601952 G A MTSS1 Silent p.S98S 0.19 TCGA-KB-A93H-01 8 139255303 139255303 C T FAM135B Missense_Mutation p.R184H 0.19 deleterious(0) possibly_damaging(0.775) TCGA-KB-A93H-01 8 142490010 142490010 C A MROH5 Intron 0.55 TCGA-KB-A93H-01 8 143694768 143694768 C G ARC Missense_Mutation p.D289H 0.23 deleterious(0.01) possibly_damaging(0.747) TCGA-KB-A93H-01 8 146076122 146076122 C T COMMD5 Missense_Mutation p.R201Q 0.18 deleterious(0) probably_damaging(1) TCGA-KB-A93H-01 8 33406262 33406262 C T RNF122 3'UTR 0.24 TCGA-KB-A93H-01 8 37730001 37730001 G A RAB11FIP1 Silent p.P773P 0.30 TCGA-KB-A93H-01 8 4495024 4495024 A G CSMD1 Missense_Mutation p.F48L 0.33 probably_damaging(0.99) TCGA-KB-A93H-01 8 55533973 55533973 G A RP1 Missense_Mutation p.M149I 0.23 tolerated(0.2) benign(0.059) TCGA-KB-A93H-01 8 59409268 59409268 G T CYP7A1 Missense_Mutation p.S268Y 0.28 deleterious(0.02) benign(0.154) TCGA-KB-A93H-01 8 618718 618718 T C ERICH1 Missense_Mutation p.S380G 0.29 tolerated(0.19) benign(0.033) TCGA-KB-A93H-01 8 63978562 63978562 C A TTPA Silent p.R151R 0.58 TCGA-KB-A93H-01 8 6794401 6794401 G A DEFA4 Silent p.L7L 0.33 TCGA-KB-A93H-01 8 70501310 70501310 C T SULF1 Missense_Mutation p.A223V 0.56 deleterious(0.04) probably_damaging(0.949) TCGA-KB-A93H-01 8 75737530 75737530 C T PI15 Missense_Mutation p.L16F 0.32 tolerated(0.7) unknown(0) TCGA-KB-A93H-01 8 79514086 79514086 A G PKIA 3'UTR 0.38 TCGA-KB-A93H-01 9 133759480 133759480 C A ABL1 Missense_Mutation p.S620R 0.44 tolerated_low_confidence(0.13) probably_damaging(0.996) TCGA-KB-A93H-01 9 21385186 21385186 G A IFNA2 Missense_Mutation p.S48F 0.10 deleterious(0.03) possibly_damaging(0.861) TCGA-KB-A93H-01 9 43628696 43628696 T A SPATA31A6 Splice_Site p.X83_splice 0.36 TCGA-KB-A93H-01 9 65507569 65507569 T A SPATA31A7 Splice_Site p.X83_splice 0.12 TCGA-KB-A93H-01 9 8517924 8517924 A T PTPRD Silent p.S489S 0.13 TCGA-KB-A93H-01 9 91616077 91616077 T C S1PR3 5'UTR 0.18 TCGA-KB-A93H-01 X 100611105 100611105 T C BTK Missense_Mutation p.M501V 0.04 deleterious(0) probably_damaging(0.997) TCGA-KB-A93H-01 X 100880239 100880239 T G ARMCX3 Silent p.A90A 0.11 TCGA-KB-A93H-01 X 100880282 100880282 G A ARMCX3 Missense_Mutation p.V105I 0.17 tolerated(0.26) possibly_damaging(0.785) TCGA-KB-A93H-01 X 101911142 101911142 A G GPRASP1 Silent p.E767E 0.11 TCGA-KB-A93H-01 X 102529232 102529232 T G TCEAL5 Missense_Mutation p.E87A 0.06 deleterious(0) probably_damaging(0.981) TCGA-KB-A93H-01 X 105159777 105159777 A C NRK Missense_Mutation p.K803T 0.27 tolerated(0.43) benign(0.002) TCGA-KB-A93H-01 X 105167219 105167219 C T NRK Missense_Mutation p.P908L 0.09 deleterious(0) probably_damaging(0.999) TCGA-KB-A93H-01 X 108641787 108641787 G A GUCY2F Missense_Mutation p.P756S 0.06 tolerated(0.81) benign(0.109) TCGA-KB-A93H-01 X 110574171 110574171 G A DCX Nonsense_Mutation p.R384* 0.50 TCGA-KB-A93H-01 X 111097061 111097061 C T TRPC5 Missense_Mutation p.D392N 0.16 tolerated(0.27) benign(0.003) TCGA-KB-A93H-01 X 118222607 118222607 A C KIAA1210 Silent p.T862T 0.18 TCGA-KB-A93H-01 X 120182120 120182120 C G GLUD2 Silent p.T194T 0.31 TCGA-KB-A93H-01 X 125299786 125299786 T G DCAF12L2 Missense_Mutation p.K41T 0.26 tolerated(0.06) benign(0.007) TCGA-KB-A93H-01 X 135633060 135633060 C - VGLL1 Intron 0.17 TCGA-KB-A93H-01 X 139586640 139586640 G A SOX3 Missense_Mutation p.R196C 0.19 deleterious(0) probably_damaging(0.997) TCGA-KB-A93H-01 X 140995182 140995182 G T MAGEC1 Missense_Mutation p.Q664H 0.10 deleterious_low_confidence(0) benign(0.216) TCGA-KB-A93H-01 X 147744045 147744045 C T AFF2 Missense_Mutation p.S266L 0.06 tolerated(0.1) benign(0.001) TCGA-KB-A93H-01 X 14918721 14918721 A G MOSPD2 Missense_Mutation p.I168V 0.22 tolerated(0.14) benign(0.124) TCGA-KB-A93H-01 X 149944666 149944668 CTT - CD99L2 In_Frame_Del p.K212del 0.23 TCGA-KB-A93H-01 X 153043466 153043466 G T PLXNB3 Silent p.V1798V 0.11 TCGA-KB-A93H-01 X 153689644 153689644 C T PLXNA3 Missense_Mutation p.A267V 0.25 tolerated(0.37) benign(0.233) TCGA-KB-A93H-01 X 1584488 1584488 G A P2RY8 Missense_Mutation p.R322C 0.11 deleterious(0.01) possibly_damaging(0.614) TCGA-KB-A93H-01 X 17043240 17043240 A C REPS2 Missense_Mutation p.H202P 0.11 tolerated(0.14) benign(0.157) TCGA-KB-A93H-01 X 18768030 18768030 C T PPEF1 Missense_Mutation p.T119M 0.16 tolerated(0.1) possibly_damaging(0.901) TCGA-KB-A93H-01 X 22291076 22291076 C T ZNF645 5'UTR 0.21 TCGA-KB-A93H-01 X 31515026 31515026 C T DMD Missense_Mutation p.R2809H 0.15 possibly_damaging(0.715) TCGA-KB-A93H-01 X 31854905 31854905 G A DMD Missense_Mutation p.P2377L 0.43 benign(0) TCGA-KB-A93H-01 X 51487038 51487038 C T GSPT2 Missense_Mutation p.R106W 0.37 deleterious_low_confidence(0.03) benign(0) TCGA-KB-A93H-01 X 55026847 55026847 C T APEX2 5'UTR 0.38 TCGA-KB-A93H-01 X 55033834 55033834 G A APEX2 Missense_Mutation p.R508Q 0.29 deleterious(0.04) possibly_damaging(0.532) TCGA-KB-A93H-01 X 57162374 57162374 T G SPIN2A Missense_Mutation p.E219D 0.28 tolerated(0.69) benign(0.001) TCGA-KB-A93H-01 X 591588 591588 C T SHOX 5'UTR 0.18 TCGA-KB-A93H-01 X 66942804 66942804 A G AR Missense_Mutation p.K862R 0.35 tolerated(0.21) probably_damaging(0.962) TCGA-KB-A93H-01 X 67413751 67413751 G A OPHN1 Silent p.I394I 0.31 TCGA-KB-A93H-01 X 70344010 70344010 G A MED12 Silent p.T582T 0.27 TCGA-KB-A93H-01 X 75649348 75649348 C A MAGEE1 Missense_Mutation p.T342N 0.26 tolerated_low_confidence(0.08) benign(0.037) TCGA-KB-A93H-01 X 75650631 75650631 G T MAGEE1 Nonsense_Mutation p.G770* 0.17 TCGA-KB-A93H-01 X 79698369 79698369 T G FAM46D Missense_Mutation p.F111V 0.30 deleterious(0) possibly_damaging(0.792) TCGA-KB-A93H-01 X 90691700 90691700 T C PABPC5 Missense_Mutation p.L375P 0.43 deleterious(0) probably_damaging(0.976) TCGA-KB-A93H-01 X 96327970 96327970 A C DIAPH2 Missense_Mutation p.K694T 0.15 deleterious(0.01) benign(0.262) TCGA-KB-A93H-01 X 9863575 9863575 G A SHROOM2 Missense_Mutation p.E543K 0.33 tolerated(0.2) benign(0) TCGA-KB-A93J-01 10 116621001 116621001 C A FAM160B1 Missense_Mutation p.D700E 0.29 tolerated(0.24) benign(0.033) TCGA-KB-A93J-01 10 117059664 117059664 T - ATRNL1 Frame_Shift_Del p.C847Vfs*12 0.33 TCGA-KB-A93J-01 10 128192785 128192786 - T C10orf90 Frame_Shift_Ins p.D329Gfs*51 0.33 TCGA-KB-A93J-01 10 61946579 61946581 ACT G ANK3 Frame_Shift_Del p.V660Yfs*26 0.33 TCGA-KB-A93J-01 11 102401449 102401451 AAT - MMP7 5'UTR 0.21 TCGA-KB-A93J-01 11 113802150 113802150 G T HTR3B Missense_Mutation p.E86D 0.32 deleterious(0.01) possibly_damaging(0.856) TCGA-KB-A93J-01 11 122953797 122953802 TACAGT - CLMP In_Frame_Del p.T224_V225del 0.49 TCGA-KB-A93J-01 11 124180054 124180054 C T OR8D1 Silent p.A203A 0.39 TCGA-KB-A93J-01 11 128843200 128843200 T G ARHGAP32 Missense_Mutation p.Q1053H 0.38 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-KB-A93J-01 11 133816020 133816020 C T IGSF9B Silent p.G66G 0.50 TCGA-KB-A93J-01 11 63997427 63997428 - C NUDT22 Frame_Shift_Ins p.L294Pfs*? 0.26 TCGA-KB-A93J-01 11 720187 720190 CGAC - EPS8L2 Frame_Shift_Del p.D98Sfs*87 0.39 TCGA-KB-A93J-01 11 73008086 73008087 - CT P2RY6 Frame_Shift_Ins p.V176Lfs*184 0.39 TCGA-KB-A93J-01 11 8414085 8414086 - CGC STK33 In_Frame_Ins p.G505dup 0.38 TCGA-KB-A93J-01 12 107109185 107109185 G A RFX4 Missense_Mutation p.R343Q 0.19 deleterious(0.02) probably_damaging(0.947) TCGA-KB-A93J-01 12 113822009 113822012 AACC T PLBD2 In_Frame_Del p.N353_R354delinsC 0.41 TCGA-KB-A93J-01 12 117603403 117603404 - TGAC FBXO21 Frame_Shift_Ins p.Y405Vfs*49 0.37 TCGA-KB-A93J-01 12 121019044 121019048 GTTCG - POP5 Frame_Shift_Del p.E12Gfs*3 0.44 TCGA-KB-A93J-01 12 133384698 133384699 - GAT GOLGA3 In_Frame_Ins p.S319dup 0.38 TCGA-KB-A93J-01 12 52432513 52432513 A T NR4A1 Intron 0.35 TCGA-KB-A93J-01 12 56495820 56495821 - TAA ERBB3 In_Frame_Ins p.N1338dup 0.45 TCGA-KB-A93J-01 12 62104077 62104077 G A FAM19A2 3'UTR 0.40 TCGA-KB-A93J-01 12 62794968 62794968 T C USP15 Silent p.Y892Y 0.30 TCGA-KB-A93J-01 12 93210094 93210099 TCTTGT - EEA1 In_Frame_Del p.E604_Q605del 0.58 TCGA-KB-A93J-01 12 988923 988924 - AG WNK1 Frame_Shift_Ins p.A854Gfs*51 0.39 TCGA-KB-A93J-01 13 111927980 111927980 C T ARHGEF7 Silent p.N479N 0.37 TCGA-KB-A93J-01 13 77641765 77641776 CAGTGGTACCAG - MYCBP2 In_Frame_Del p.A4094_T4097del 0.35 TCGA-KB-A93J-01 13 92002892 92002899 TAGTGATA - MIR17HG RNA 0.52 TCGA-KB-A93J-01 14 102661431 102661431 G T WDR20 Nonsense_Mutation p.E136* 0.34 TCGA-KB-A93J-01 14 21931857 21931858 - ATA RAB2B In_Frame_Ins p.I144dup 0.38 TCGA-KB-A93J-01 14 57741180 57741180 C G AP5M1 Missense_Mutation p.A98G 0.39 deleterious(0) benign(0.001) TCGA-KB-A93J-01 14 75576578 75576578 G - NEK9 Frame_Shift_Del p.S331* 0.36 TCGA-KB-A93J-01 14 76241902 76241902 C T TTLL5 Nonsense_Mutation p.R738* 0.32 TCGA-KB-A93J-01 14 76647193 76647198 GTAATT - GPATCH2L Splice_Site p.X398_splice 0.33 TCGA-KB-A93J-01 15 43668402 43668403 AC - TUBGCP4 Frame_Shift_Del p.T63Gfs*43 0.28 TCGA-KB-A93J-01 15 43748755 43748755 A G TP53BP1 Missense_Mutation p.L684P 0.34 tolerated(0.32) benign(0.001) TCGA-KB-A93J-01 15 45440176 45440177 - AGTT DUOX1 Frame_Shift_Ins p.F876Lfs*24 0.32 TCGA-KB-A93J-01 15 51535135 51535135 G A CYP19A1 5'UTR 0.27 TCGA-KB-A93J-01 16 14958442 14958443 - TCA NOMO1 In_Frame_Ins p.M467dup 0.49 TCGA-KB-A93J-01 16 19034446 19034446 A G TMC7 Missense_Mutation p.T214A 0.26 tolerated(0.13) benign(0.015) TCGA-KB-A93J-01 16 2264040 2264041 - CAGA PGP Frame_Shift_Ins p.V219Sfs*75 0.36 TCGA-KB-A93J-01 16 30129805 30129806 - TG MAPK3 Frame_Shift_Ins p.Q136Hfs*4 0.34 TCGA-KB-A93J-01 16 50138870 50138871 - A HEATR3 Frame_Shift_Ins p.N648Kfs*3 0.36 TCGA-KB-A93J-01 16 57597752 57597789 CTCTGCAGGCAGGAGGTCAGCATGCCCGGGGTCAGCAC AACT GPR114 Splice_Site p.X100_splice 0.33 TCGA-KB-A93J-01 16 58230656 58230657 - CT CSNK2A2 Frame_Shift_Ins p.V66Efs*4 0.28 TCGA-KB-A93J-01 16 67228856 67228857 - T E2F4 Frame_Shift_Ins p.M261Ifs*7 0.30 TCGA-KB-A93J-01 17 27287986 27287986 A T SEZ6 Missense_Mutation p.C416S 0.38 deleterious(0) probably_damaging(0.998) TCGA-KB-A93J-01 17 38560458 38560458 C A TOP2A Missense_Mutation p.K743N 0.38 deleterious(0) probably_damaging(0.987) TCGA-KB-A93J-01 17 46023272 46023272 G A PNPO Missense_Mutation p.E155K 0.37 tolerated(0.66) benign(0.001) TCGA-KB-A93J-01 17 60140536 60140537 - ATCT MED13 Frame_Shift_Ins p.V65Rfs*24 0.43 TCGA-KB-A93J-01 17 61988596 61988596 G A CSHL1 5'Flank 0.27 TCGA-KB-A93J-01 17 71199778 71199788 GGTATGTACAG - COG1 Frame_Shift_Del p.W743Ffs*5 0.23 TCGA-KB-A93J-01 17 7579528 7579529 - CATT TP53 Nonsense_Mutation p.W53* 0.61 TCGA-KB-A93J-01 18 72347286 72347287 - C ZNF407 Frame_Shift_Ins p.T1439Yfs*27 0.31 TCGA-KB-A93J-01 19 110675 110676 CT - OR4F17 5'UTR 0.15 TCGA-KB-A93J-01 19 14518008 14518009 - CTCT CD97 Frame_Shift_Ins p.Y783Sfs*105 0.40 TCGA-KB-A93J-01 19 17405215 17405216 - CGCT ABHD8 Frame_Shift_Ins p.G344Efs*29 0.58 TCGA-KB-A93J-01 19 18650522 18650523 - C FKBP8 Frame_Shift_Ins p.L101Afs*49 0.30 TCGA-KB-A93J-01 19 19135627 19135635 TGAGGGAGC - SUGP2 In_Frame_Del p.A508_S510del 0.26 TCGA-KB-A93J-01 19 19734941 19734960 TGCCATGCCAGACCTTGTCC - LPAR2 3'UTR 0.44 TCGA-KB-A93J-01 19 30934638 30934638 G A ZNF536 Missense_Mutation p.E57K 0.33 deleterious_low_confidence(0) benign(0.254) TCGA-KB-A93J-01 19 37038021 37038027 CATTCAT - ZNF529 Frame_Shift_Del p.Y478Lfs*89 0.50 TCGA-KB-A93J-01 19 39308209 39308212 TCAA - AC104534.3 Frame_Shift_Del p.I288Tfs*2 0.46 TCGA-KB-A93J-01 19 41727860 41727860 C A AXL Missense_Mutation p.A162D 0.38 deleterious(0) probably_damaging(1) TCGA-KB-A93J-01 19 41854249 41854249 C T TGFB1 Missense_Mutation p.R156H 0.26 deleterious(0) probably_damaging(0.994) TCGA-KB-A93J-01 19 44512950 44512950 G - ZNF230 Frame_Shift_Del p.T9Pfs*28 0.11 TCGA-KB-A93J-01 19 4932880 4932884 AAGGA - MIR4747 3'Flank 0.39 TCGA-KB-A93J-01 19 49639036 49639037 - TCTC PPFIA3 Frame_Shift_Ins p.P510Sfs*71 0.44 TCGA-KB-A93J-01 19 50398324 50398324 C A IL4I1 Splice_Site p.X144_splice 0.39 TCGA-KB-A93J-01 19 50864250 50864252 GTA CT NAPSA Frame_Shift_Del p.V205Efs*61 0.32 TCGA-KB-A93J-01 19 52469194 52469194 C T ZNF350 Missense_Mutation p.R171Q 0.30 tolerated(1) benign(0.001) TCGA-KB-A93J-01 19 57036524 57036524 G A ZNF471 Missense_Mutation p.R363H 0.28 deleterious(0.04) probably_damaging(0.994) TCGA-KB-A93J-01 1 145561465 145561466 - TAAA ANKRD35 Frame_Shift_Ins p.K386Nfs*21 0.54 TCGA-KB-A93J-01 1 150551525 150551526 - GTA MCL1 In_Frame_Ins p.L160dup 0.38 TCGA-KB-A93J-01 1 152279422 152279422 C A FLG Missense_Mutation p.R2647I 0.15 possibly_damaging(0.865) TCGA-KB-A93J-01 1 152283655 152283655 C T FLG Missense_Mutation p.R1236H 0.35 possibly_damaging(0.812) TCGA-KB-A93J-01 1 196709923 196709923 G A CFH Splice_Site p.X986_splice 0.35 TCGA-KB-A93J-01 1 203155776 203155777 - GT CHI3L1 5'UTR 0.15 TCGA-KB-A93J-01 1 207196582 207196582 C A C1orf116 Missense_Mutation p.S176I 0.35 tolerated(0.05) possibly_damaging(0.822) TCGA-KB-A93J-01 1 217688227 217688229 GGT - GPATCH2 In_Frame_Del p.P368del 0.50 TCGA-KB-A93J-01 1 223949912 223949915 GATG - CAPN2 Frame_Shift_Del p.D531Mfs*26 0.41 TCGA-KB-A93J-01 1 224321874 224321874 A C FBXO28 Missense_Mutation p.K159T 0.39 deleterious(0.02) probably_damaging(0.987) TCGA-KB-A93J-01 1 227235703 227235704 - TC CDC42BPA Frame_Shift_Ins p.D971Efs*13 0.39 TCGA-KB-A93J-01 1 237955537 237955537 G A RYR2 Missense_Mutation p.G4566S 0.36 probably_damaging(0.977) TCGA-KB-A93J-01 1 249150119 249150120 AG - ZNF692 Frame_Shift_Del p.L234Afs*9 0.40 TCGA-KB-A93J-01 1 36282644 36282660 AACAGGTAAGGATTAGA - AGO4 Splice_Site p.X62_splice 0.33 TCGA-KB-A93J-01 1 39341617 39341647 AGCCAGACTGCTCATCATTCCAGACATCTTC - GJA9 Frame_Shift_Del p.E42Sfs*31 0.36 TCGA-KB-A93J-01 1 45475688 45475689 - TAC HECTD3 Nonsense_Mutation p.Q242_Y243ins* 0.38 TCGA-KB-A93J-01 1 6688693 6688693 G A THAP3 Missense_Mutation p.R70H 0.07 deleterious(0) probably_damaging(0.997) TCGA-KB-A93J-01 20 1456934 1456938 TAATT G SIRPB2 Frame_Shift_Del p.I302Pfs*30 0.27 TCGA-KB-A93J-01 20 25000722 25000725 AGCC T ACSS1 In_Frame_Del p.A390del 0.18 TCGA-KB-A93J-01 20 2843409 2843409 G A VPS16 Intron 0.46 TCGA-KB-A93J-01 20 44429743 44429744 - TAA DNTTIP1 In_Frame_Ins p.I136dup 0.35 TCGA-KB-A93J-01 20 44518904 44518909 GGACAA - NEURL2 In_Frame_Del p.L241_V242del 0.20 TCGA-KB-A93J-01 20 7886945 7886945 A C HAO1 Missense_Mutation p.F193V 0.33 tolerated(0.5) possibly_damaging(0.579) TCGA-KB-A93J-01 22 19119599 19119599 G A TSSK2 Silent p.K229K 0.06 TCGA-KB-A93J-01 22 35726366 35726368 GCA - TOM1 In_Frame_Del p.Q266del 0.53 TCGA-KB-A93J-01 22 44601647 44601647 T C PARVG Missense_Mutation p.V275A 0.27 deleterious(0) probably_damaging(0.948) TCGA-KB-A93J-01 2 182780852 182780855 CCTA - SSFA2 Frame_Shift_Del p.T830Vfs*35 0.41 TCGA-KB-A93J-01 2 200800664 200800665 - A TYW5 Frame_Shift_Ins p.L227Ffs*10 0.29 TCGA-KB-A93J-01 2 20205846 20205848 ACG CACA MATN3 Frame_Shift_Ins p.R152Sfs*35 0.10 TCGA-KB-A93J-01 2 231109745 231109746 - TGG SP140 In_Frame_Ins p.G208dup 0.46 TCGA-KB-A93J-01 2 231120 231121 - C SH3YL1 Frame_Shift_Ins p.D202Gfs*4 0.28 TCGA-KB-A93J-01 2 234093074 234093075 - A INPP5D Frame_Shift_Ins p.G717Rfs*4 0.32 TCGA-KB-A93J-01 2 27669168 27669169 GT - IFT172 Frame_Shift_Del p.P1572Cfs*7 0.49 TCGA-KB-A93J-01 2 70315933 70315934 - G PCBP1 Frame_Shift_Ins p.C355Vfs*11 0.33 TCGA-KB-A93J-01 2 80874749 80874749 C T CTNNA2 Silent p.L824L 0.29 TCGA-KB-A93J-01 3 113342480 113342480 C G SIDT1 Missense_Mutation p.S736C 0.34 deleterious(0.01) possibly_damaging(0.841) TCGA-KB-A93J-01 3 113342495 113342495 C A SIDT1 Missense_Mutation p.P741Q 0.36 tolerated(0.3) benign(0.436) TCGA-KB-A93J-01 3 121415000 121415000 T - GOLGB1 Frame_Shift_Del p.E1457Gfs*3 0.29 TCGA-KB-A93J-01 3 122003126 122003139 CCTGATCGGCTACA - CASR Frame_Shift_Del p.I787Pfs*22 0.54 TCGA-KB-A93J-01 3 158178787 158178796 AGGAAGGTAA - RSRC1 Splice_Site p.X217_splice 0.48 TCGA-KB-A93J-01 3 185252832 185252833 - T LIPH Nonsense_Mutation p.Y46* 0.30 TCGA-KB-A93J-01 3 24004063 24004064 TT - NR1D2 Frame_Shift_Del p.S371Rfs*17 0.54 TCGA-KB-A93J-01 3 9547794 9547795 - AGT LHFPL4 In_Frame_Ins p.Y166dup 0.34 TCGA-KB-A93J-01 3 97868727 97868727 A C OR5H14 Silent p.L166L 0.06 TCGA-KB-A93J-01 4 39290366 39290366 T C RFC1 3'UTR 0.32 TCGA-KB-A93J-01 4 78081964 78081965 - A CCNG2 Frame_Shift_Ins p.H123Qfs*2 0.26 TCGA-KB-A93J-01 5 140214266 140214266 G A PCDHA7 Missense_Mutation p.A100T 0.12 tolerated_low_confidence(0.1) benign(0.275) TCGA-KB-A93J-01 5 140228378 140228378 G A PCDHA9 Missense_Mutation p.A100T 0.28 tolerated_low_confidence(0.06) possibly_damaging(0.517) TCGA-KB-A93J-01 5 140720449 140720449 G A PCDHGA2 Silent p.A637A 0.12 TCGA-KB-A93J-01 5 140963154 140963154 G A DIAPH1 Missense_Mutation p.S144F 0.30 unknown(0) TCGA-KB-A93J-01 5 142258963 142258964 - TCAC ARHGAP26 Frame_Shift_Ins p.P115Hfs*22 0.55 TCGA-KB-A93J-01 5 148206398 148206401 GGGC - ADRB2 Frame_Shift_Del p.G2Nfs*94 0.44 TCGA-KB-A93J-01 5 149459703 149459707 CTTGG - CSF1R Frame_Shift_Del p.A167Vfs*62 0.52 TCGA-KB-A93J-01 5 150400241 150400241 G A GPX3 Missense_Mutation p.C9Y 0.18 tolerated_low_confidence(0.71) probably_damaging(0.991) TCGA-KB-A93J-01 5 168187930 168187930 T C SLIT3 Missense_Mutation p.D541G 0.31 deleterious(0.01) probably_damaging(1) TCGA-KB-A93J-01 5 43543171 43543173 ATT - PAIP1 In_Frame_Del p.N223del 0.34 TCGA-KB-A93J-01 5 61699107 61699118 ATAATGCTGTTA - DIMT1 In_Frame_Del p.N46_I49del 0.38 TCGA-KB-A93J-01 5 82835794 82835795 - G VCAN Frame_Shift_Ins p.S2326Vfs*13 0.31 TCGA-KB-A93J-01 6 132938758 132938758 G A TAAR2 Missense_Mutation p.A196V 0.57 tolerated(0.41) probably_damaging(0.953) TCGA-KB-A93J-01 6 168290003 168290020 AAAGGTAGTAACCTTATT - MLLT4 Splice_Site p.X337_splice 0.18 TCGA-KB-A93J-01 6 29643829 29643830 AC - ZFP57 Frame_Shift_Del p.V44Hfs*3 0.36 TCGA-KB-A93J-01 6 31323269 31323270 GG - HLA-B Frame_Shift_Del p.T240Mfs*13 0.49 TCGA-KB-A93J-01 6 31431703 31431703 T AC HCP5 RNA 0.54 TCGA-KB-A93J-01 6 32165325 32165326 - TG NOTCH4 Frame_Shift_Ins p.Q1601Hfs*106 0.62 TCGA-KB-A93J-01 6 39159166 39159167 - C KCNK5 Frame_Shift_Ins p.L334Afs*41 0.32 TCGA-KB-A93J-01 7 102939015 102939020 TCATTA - PMPCB In_Frame_Del p.S34_L35del 0.37 TCGA-KB-A93J-01 7 120629671 120629676 TGGTCA - CPED1 Missense_Mutation p.MV1_?2 0.44 TCGA-KB-A93J-01 7 138758731 138758733 ACA - ZC3HAV1 In_Frame_Del p.C581del 0.10 TCGA-KB-A93J-01 7 89861940 89861942 GAC ATCAGAT STEAP2 3'UTR 0.16 TCGA-KB-A93J-01 8 100148981 100148982 - TA VPS13B Splice_Site p.X551_splice 0.30 TCGA-KB-A93J-01 8 125580631 125580631 G A MTSS1 Missense_Mutation p.R203W 0.05 deleterious(0) probably_damaging(0.996) TCGA-KB-A93J-01 8 145623706 145623707 - GGAT CPSF1 Frame_Shift_Ins p.R627Hfs*48 0.49 TCGA-KB-A93J-01 8 71053479 71053479 T C NCOA2 Missense_Mutation p.M990V 0.39 tolerated(0.22) benign(0.028) TCGA-KB-A93J-01 8 89198754 89198754 G A MMP16 Nonsense_Mutation p.R119* 0.36 TCGA-KB-A93J-01 9 100616633 100616633 G A FOXE1 Missense_Mutation p.R146H 0.30 deleterious(0) probably_damaging(0.996) TCGA-KB-A93J-01 9 100983179 100983180 - GA TBC1D2 Frame_Shift_Ins p.P437Lfs*13 0.23 TCGA-KB-A93J-01 9 125281455 125281455 C G OR1J4 Missense_Mutation p.F12L 0.28 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-KB-A93J-01 9 132571787 132571788 - T TOR1B Frame_Shift_Ins p.R316Qfs*64 0.35 TCGA-KB-A93J-01 9 35068344 35068345 GT - VCP Frame_Shift_Del p.D11Afs*18 0.35 TCGA-KB-A93J-01 9 35102749 35102750 - T STOML2 Frame_Shift_Ins p.F40Vfs*49 0.38 TCGA-KB-A93J-01 9 35906423 35906425 GCT - HRCT1 In_Frame_Del p.A48del 0.43 TCGA-KB-A93J-01 9 6805671 6805671 A G KDM4C Missense_Mutation p.I73V 0.54 deleterious(0.01) benign(0.004) TCGA-KB-A93J-01 9 96860420 96860421 - G PTPDC1 Frame_Shift_Ins p.S524Vfs*42 0.24 TCGA-KB-A93J-01 X 129290439 129290450 GCACCAGCTCCT - AIFM1 In_Frame_Del p.G79_A82del 0.65 TCGA-KB-A93J-01 X 44949103 44949106 GCAG - KDM6A Frame_Shift_Del p.G1223Lfs*41 0.80 TCGA-MX-A5UG-01 10 55626443 55626443 C T PCDH15 Missense_Mutation p.D1226N 0.07 deleterious(0) probably_damaging(1) TCGA-MX-A5UG-01 10 68979397 68979397 C T CTNNA3 Missense_Mutation p.A271T 0.04 deleterious(0.01) possibly_damaging(0.787) TCGA-MX-A5UG-01 10 76797677 76797677 G A DUPD1 Missense_Mutation p.R194W 0.08 deleterious(0.03) probably_damaging(1) TCGA-MX-A5UG-01 11 43342466 43342466 T G API5 Splice_Site p.X109_splice 0.06 TCGA-MX-A5UG-01 11 47594626 47594626 G A KBTBD4 Silent p.S487S 0.07 TCGA-MX-A5UG-01 11 94532866 94532866 G A AMOTL1 Silent p.T170T 0.07 TCGA-MX-A5UG-01 12 114395810 114395810 G A RBM19 Missense_Mutation p.S206L 0.08 deleterious(0) probably_damaging(0.999) TCGA-MX-A5UG-01 12 42853842 42853842 G A PRICKLE1 Silent p.Y755Y 0.06 TCGA-MX-A5UG-01 12 49433006 49433006 G A KMT2D Missense_Mutation p.R2789W 0.04 probably_damaging(0.997) TCGA-MX-A5UG-01 12 55726183 55726183 G T OR6C3 Missense_Mutation p.K233N 0.08 deleterious_low_confidence(0.01) benign(0.327) TCGA-MX-A5UG-01 13 38172942 38172942 C G POSTN 5'UTR 0.08 TCGA-MX-A5UG-01 13 39433691 39433691 C T FREM2 Missense_Mutation p.L2495F 0.10 deleterious(0.03) possibly_damaging(0.795) TCGA-MX-A5UG-01 13 41134954 41134954 C T FOXO1 Missense_Mutation p.R225H 0.11 deleterious(0) probably_damaging(0.992) TCGA-MX-A5UG-01 15 74625112 74625112 G A CCDC33 Missense_Mutation p.A622T 0.05 tolerated(0.46) benign(0.016) TCGA-MX-A5UG-01 16 68845617 68845617 A T CDH1 Missense_Mutation p.D288V 0.10 deleterious(0) probably_damaging(0.997) TCGA-MX-A5UG-01 17 4621944 4621944 C G ARRB2 Silent p.A269A 0.04 TCGA-MX-A5UG-01 17 59445778 59445778 C T BCAS3 Missense_Mutation p.T854M 0.05 tolerated(0.23) benign(0.121) TCGA-MX-A5UG-01 17 7942406 7942406 C T ALOX15B 5'UTR 0.08 TCGA-MX-A5UG-01 18 71815915 71815915 T C TIMM21 5'UTR 0.09 TCGA-MX-A5UG-01 18 9256666 9256666 A G ANKRD12 Missense_Mutation p.K1134R 0.08 tolerated(0.15) benign(0.03) TCGA-MX-A5UG-01 19 36832181 36832181 G A ZFP14 Missense_Mutation p.R183C 0.04 tolerated(0.2) possibly_damaging(0.86) TCGA-MX-A5UG-01 19 44470307 44470307 G A ZNF221 Missense_Mutation p.R218K 0.05 tolerated(0.12) benign(0.047) TCGA-MX-A5UG-01 19 46299120 46299120 G A RSPH6A 3'UTR 0.05 TCGA-MX-A5UG-01 19 47231908 47231908 G A STRN4 Missense_Mutation p.R336W 0.08 deleterious(0.05) probably_damaging(0.997) TCGA-MX-A5UG-01 1 18152626 18152626 A G ACTL8 Missense_Mutation p.Y238C 0.12 deleterious(0.02) possibly_damaging(0.509) TCGA-MX-A5UG-01 1 18808875 18808875 G A KLHDC7A Missense_Mutation p.R467H 0.07 deleterious(0) probably_damaging(0.988) TCGA-MX-A5UG-01 1 22168592 22168592 G A HSPG2 Silent p.T3032T 0.07 TCGA-MX-A5UG-01 1 24483696 24483696 G A IFNLR1 Missense_Mutation p.A496V 0.07 tolerated(0.06) benign(0.124) TCGA-MX-A5UG-01 20 13797519 13797519 A G NDUFAF5 Splice_Site p.X288_splice 0.08 TCGA-MX-A5UG-01 20 61468494 61468494 C T COL9A3 Missense_Mutation p.R555W 0.04 deleterious(0) probably_damaging(0.999) TCGA-MX-A5UG-01 2 167056293 167056293 C T SCN9A Missense_Mutation p.R1608Q 0.10 deleterious(0.01) possibly_damaging(0.8) TCGA-MX-A5UG-01 2 21227307 21227307 G A APOB Missense_Mutation p.A3974V 0.08 benign(0.001) TCGA-MX-A5UG-01 2 220113186 220113186 G A STK16 Missense_Mutation p.V275M 0.06 deleterious(0.01) possibly_damaging(0.848) TCGA-MX-A5UG-01 2 230723955 230723955 C T TRIP12 Missense_Mutation p.R145Q 0.06 tolerated_low_confidence(0.36) benign(0.019) TCGA-MX-A5UG-01 2 80530773 80530773 T A LRRTM1 Missense_Mutation p.T58S 0.10 tolerated(0.54) probably_damaging(0.956) TCGA-MX-A5UG-01 2 90248961 90248961 G T IGKV1D-43 Silent p.L14L 0.06 TCGA-MX-A5UG-01 3 107435614 107435614 G A BBX Missense_Mutation p.R108Q 0.07 deleterious(0) probably_damaging(0.997) TCGA-MX-A5UG-01 3 15752776 15752776 C T ANKRD28 Missense_Mutation p.D397N 0.11 deleterious(0.01) possibly_damaging(0.626) TCGA-MX-A5UG-01 3 36485104 36485104 C T STAC Silent p.F120F 0.07 TCGA-MX-A5UG-01 5 121787028 121787028 G A SNCAIP Missense_Mutation p.S829N 0.10 tolerated(0.37) benign(0.003) TCGA-MX-A5UG-01 5 132585191 132585191 T G FSTL4 Missense_Mutation p.T269P 0.07 deleterious(0.01) probably_damaging(0.988) TCGA-MX-A5UG-01 5 140263929 140263929 G A PCDHA13 Silent p.A692A 0.06 TCGA-MX-A5UG-01 5 83433075 83433075 T G EDIL3 Silent p.G151G 0.10 TCGA-MX-A5UG-01 6 100062567 100062567 G A PRDM13 Missense_Mutation p.V686M 0.05 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-MX-A5UG-01 6 105474282 105474282 G T LIN28B Missense_Mutation p.G103V 0.06 deleterious(0.01) probably_damaging(0.983) TCGA-MX-A5UG-01 6 117053378 117053378 C G KPNA5 Nonsense_Mutation p.Y504* 0.08 TCGA-MX-A5UG-01 6 33405587 33405587 C T SYNGAP1 Missense_Mutation p.S302F 0.05 deleterious_low_confidence(0.01) possibly_damaging(0.788) TCGA-MX-A5UG-01 7 114282603 114282603 C T FOXP2 Missense_Mutation p.S330F 0.04 deleterious(0.02) unknown(0) TCGA-MX-A5UG-01 7 99227307 99227307 C T ZSCAN25 Silent p.C433C 0.09 TCGA-MX-A5UG-01 8 35453085 35453085 C G UNC5D Missense_Mutation p.N160K 0.05 deleterious(0) probably_damaging(0.95) TCGA-MX-A5UG-01 8 42218839 42218839 G A POLB Missense_Mutation p.V193I 0.07 tolerated(0.42) benign(0.001) TCGA-MX-A5UG-01 8 75737622 75737622 A G PI15 Silent p.A46A 0.13 TCGA-MX-A5UG-01 X 119059334 119059334 C T NKAP Missense_Mutation p.R366Q 0.06 deleterious(0) unknown(0) TCGA-MX-A5UG-01 X 144905267 144905267 A T SLITRK2 Missense_Mutation p.M442L 0.09 tolerated(0.56) benign(0.009) TCGA-MX-A5UG-01 X 49079193 49079193 G A CACNA1F Silent p.L741L 0.15 TCGA-MX-A5UG-01 X 64949405 64949405 C T MSN Missense_Mutation p.R100C 0.16 deleterious(0) probably_damaging(0.992) TCGA-MX-A5UJ-01 10 101997853 101997853 G A CWF19L1 Missense_Mutation p.R394W 0.25 deleterious(0) possibly_damaging(0.512) TCGA-MX-A5UJ-01 10 102089765 102089765 G A PKD2L1 Silent p.H32H 0.17 TCGA-MX-A5UJ-01 10 105659880 105659880 G A OBFC1 Nonsense_Mutation p.R133* 0.16 TCGA-MX-A5UJ-01 10 11060019 11060019 C - CELF2 5'UTR 0.20 TCGA-MX-A5UJ-01 10 111886200 111886200 T C ADD3 Missense_Mutation p.L516S 0.19 tolerated(0.06) possibly_damaging(0.517) TCGA-MX-A5UJ-01 10 112327502 112327502 G - SMC3 5'UTR 0.20 TCGA-MX-A5UJ-01 10 112839042 112839042 G A ADRA2A Missense_Mutation p.G430S 0.17 deleterious(0.01) probably_damaging(0.994) TCGA-MX-A5UJ-01 10 115515070 115515070 C T PLEKHS1 Intron 0.26 TCGA-MX-A5UJ-01 10 115540378 115540378 C T PLEKHS1 3'Flank 0.23 TCGA-MX-A5UJ-01 10 116247768 116247768 G A ABLIM1 Silent p.T330T 0.16 TCGA-MX-A5UJ-01 10 125639769 125639769 C T CPXM2 Missense_Mutation p.D121N 0.22 tolerated(0.17) benign(0.028) TCGA-MX-A5UJ-01 10 128807014 128807014 T C DOCK1 Missense_Mutation p.I335T 0.31 deleterious(0.01) benign(0) TCGA-MX-A5UJ-01 10 129902475 129902475 C A MKI67 Missense_Mutation p.R2543S 0.21 deleterious(0.01) benign(0.174) TCGA-MX-A5UJ-01 10 129906577 129906577 G A MKI67 Missense_Mutation p.T1176M 0.21 deleterious(0) possibly_damaging(0.521) TCGA-MX-A5UJ-01 10 135086017 135086017 C T ADAM8 Missense_Mutation p.V260I 0.19 tolerated(0.38) benign(0.032) TCGA-MX-A5UJ-01 10 135179542 135179542 G A ECHS1 Missense_Mutation p.A226V 0.18 deleterious(0) probably_damaging(0.973) TCGA-MX-A5UJ-01 10 16949569 16949569 A - CUBN Frame_Shift_Del p.F2548Sfs*50 0.15 TCGA-MX-A5UJ-01 10 17746448 17746448 C A STAM Missense_Mutation p.L311I 0.06 deleterious(0) probably_damaging(0.968) TCGA-MX-A5UJ-01 10 27423766 27423766 T - YME1L1 Frame_Shift_Del p.T286Pfs*5 0.18 TCGA-MX-A5UJ-01 10 28233216 28233216 C T ARMC4 Missense_Mutation p.A560T 0.16 deleterious(0) probably_damaging(0.992) TCGA-MX-A5UJ-01 10 28899642 28899642 G A WAC Missense_Mutation p.V394M 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-MX-A5UJ-01 10 28971178 28971178 T C BAMBI Silent p.L211L 0.13 TCGA-MX-A5UJ-01 10 29759315 29759315 G A SVIL Silent p.S1911S 0.27 TCGA-MX-A5UJ-01 10 34649052 34649052 C T PARD3 Missense_Mutation p.A615T 0.17 tolerated(0.37) benign(0.168) TCGA-MX-A5UJ-01 10 35928968 35928968 C T FZD8 Missense_Mutation p.G464S 0.25 deleterious(0) probably_damaging(0.994) TCGA-MX-A5UJ-01 10 48388824 48388824 T C RBP3 Missense_Mutation p.Q685R 0.23 tolerated(0.78) benign(0.069) TCGA-MX-A5UJ-01 10 48416386 48416386 G A GDF2 Missense_Mutation p.T103M 0.21 tolerated(0.86) benign(0.091) TCGA-MX-A5UJ-01 10 51586311 51586312 - C NCOA4 Frame_Shift_Ins p.D599Rfs*10 0.15 TCGA-MX-A5UJ-01 10 55943277 55943277 G A PCDH15 Missense_Mutation p.T506M 0.04 deleterious(0) probably_damaging(0.973) TCGA-MX-A5UJ-01 10 6104177 6104177 G A IL2RA 5'UTR 0.16 TCGA-MX-A5UJ-01 10 61835192 61835192 G C ANK3 Missense_Mutation p.T1816S 0.20 probably_damaging(0.935) TCGA-MX-A5UJ-01 10 63212878 63212878 C - TMEM26 5'UTR 0.22 TCGA-MX-A5UJ-01 10 71048517 71048517 G A HK1 Silent p.Q6Q 0.16 TCGA-MX-A5UJ-01 10 71855480 71855480 C T H2AFY2 Missense_Mutation p.T220I 0.16 deleterious(0) benign(0.389) TCGA-MX-A5UJ-01 10 72164272 72164272 G - EIF4EBP2 Frame_Shift_Del p.T41Rfs*47 0.26 TCGA-MX-A5UJ-01 10 72517730 72517730 T G ADAMTS14 Missense_Mutation p.C987G 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-MX-A5UJ-01 10 73111355 73111355 G A SLC29A3 Silent p.T140T 0.21 TCGA-MX-A5UJ-01 10 73501614 73501614 G A CDH23 Missense_Mutation p.R1599H 0.53 deleterious(0.02) benign(0.25) TCGA-MX-A5UJ-01 10 74885045 74885045 G A NUDT13 Intron 0.23 TCGA-MX-A5UJ-01 10 75529469 75529469 C A SEC24C Missense_Mutation p.A887D 0.18 deleterious(0) probably_damaging(1) TCGA-MX-A5UJ-01 10 7627910 7627910 G A ITIH5 Silent p.S354S 0.15 TCGA-MX-A5UJ-01 10 76854516 76854516 C T DUSP13 Missense_Mutation p.R222H 0.09 deleterious(0) probably_damaging(1) TCGA-MX-A5UJ-01 10 79163663 79163663 G A KCNMA1 Missense_Mutation p.A166V 0.21 tolerated(0.45) probably_damaging(0.995) TCGA-MX-A5UJ-01 10 79759817 79759817 C T POLR3A Silent p.E846E 0.09 TCGA-MX-A5UJ-01 10 8093088 8093088 T C GATA3 5'Flank 0.17 TCGA-MX-A5UJ-01 10 82036157 82036157 C A MAT1A Missense_Mutation p.G248V 0.34 deleterious(0) probably_damaging(0.953) TCGA-MX-A5UJ-01 10 82280275 82280275 T C TSPAN14 3'UTR 0.12 TCGA-MX-A5UJ-01 10 84711300 84711300 T A NRG3 Missense_Mutation p.F377Y 0.20 deleterious(0.01) benign(0.351) TCGA-MX-A5UJ-01 10 85984212 85984212 T A LRIT2 Missense_Mutation p.T257S 0.25 tolerated(0.16) benign(0.093) TCGA-MX-A5UJ-01 10 88703570 88703570 C T MMRN2 Missense_Mutation p.R324H 0.21 tolerated(1) benign(0) TCGA-MX-A5UJ-01 10 90122339 90122339 C T RNLS Missense_Mutation p.V224I 0.13 tolerated(1) benign(0.002) TCGA-MX-A5UJ-01 10 90984930 90984930 A - LIPA Frame_Shift_Del p.F198Lfs*19 0.19 TCGA-MX-A5UJ-01 10 95119625 95119625 T C MYOF Missense_Mutation p.K1029E 0.17 deleterious(0.05) benign(0.333) TCGA-MX-A5UJ-01 10 98031173 98031173 A G BLNK 5'UTR 0.31 TCGA-MX-A5UJ-01 10 98127887 98127887 G A TLL2 Silent p.Y1002Y 0.18 TCGA-MX-A5UJ-01 10 99132890 99132890 C T RRP12 Silent p.G698G 0.17 TCGA-MX-A5UJ-01 10 99344577 99344577 C - PI4K2A Frame_Shift_Del p.P41Lfs*2 0.25 TCGA-MX-A5UJ-01 11 101362287 101362287 T - TRPC6 Frame_Shift_Del p.K376Nfs*3 0.23 TCGA-MX-A5UJ-01 11 1021246 1021246 G A MUC6 Silent p.F1186F 0.17 TCGA-MX-A5UJ-01 11 104871047 104871047 C T CASP5 Missense_Mutation p.R311H 0.21 tolerated(0.07) benign(0.018) TCGA-MX-A5UJ-01 11 105880739 105880739 A - MSANTD4 Frame_Shift_Del p.F187Lfs*19 0.13 TCGA-MX-A5UJ-01 11 107299981 107299981 T - CWF19L2 Frame_Shift_Del p.N326Ifs*19 0.17 TCGA-MX-A5UJ-01 11 108044093 108044093 A T NPAT Missense_Mutation p.L540I 0.26 tolerated(0.14) benign(0.356) TCGA-MX-A5UJ-01 11 108277840 108277840 G A C11orf65 Nonsense_Mutation p.R71* 0.20 TCGA-MX-A5UJ-01 11 108544239 108544239 A - DDX10 Frame_Shift_Del p.T80Hfs*2 0.20 TCGA-MX-A5UJ-01 11 111896976 111896976 G A DLAT Missense_Mutation p.E112K 0.20 tolerated(0.33) probably_damaging(0.98) TCGA-MX-A5UJ-01 11 113604435 113604435 G A ZW10 Missense_Mutation p.A774V 0.24 tolerated(0.13) benign(0.04) TCGA-MX-A5UJ-01 11 116719941 116719941 C T SIK3 Silent p.P1132P 0.24 TCGA-MX-A5UJ-01 11 117374651 117374651 G A DSCAML1 Silent p.H816H 0.15 TCGA-MX-A5UJ-01 11 117710589 117710589 C - FXYD6 Intron 0.20 TCGA-MX-A5UJ-01 11 118779017 118779017 C T BCL9L Missense_Mutation p.R125Q 0.25 possibly_damaging(0.602) TCGA-MX-A5UJ-01 11 118984640 118984640 G A C2CD2L Missense_Mutation p.R523Q 0.28 deleterious(0) benign(0.392) TCGA-MX-A5UJ-01 11 120837934 120837934 C T GRIK4 Missense_Mutation p.A766V 0.16 deleterious(0.03) probably_damaging(0.945) TCGA-MX-A5UJ-01 11 122944457 122944457 G A CLMP Missense_Mutation p.R283C 0.19 deleterious(0) possibly_damaging(0.891) TCGA-MX-A5UJ-01 11 123894395 123894395 C T OR10G9 Missense_Mutation p.R226W 0.19 deleterious(0) possibly_damaging(0.883) TCGA-MX-A5UJ-01 11 128840296 128840296 C T ARHGAP32 Silent p.P1590P 0.18 TCGA-MX-A5UJ-01 11 12958805 12958805 C T TEAD1 3'UTR 0.16 TCGA-MX-A5UJ-01 11 130066524 130066524 G A ST14 Missense_Mutation p.R428H 0.24 tolerated(0.37) benign(0.036) TCGA-MX-A5UJ-01 11 133789967 133789967 A G IGSF9B Missense_Mutation p.L1218P 0.23 deleterious_low_confidence(0) possibly_damaging(0.468) TCGA-MX-A5UJ-01 11 134131676 134131676 C T ACAD8 Silent p.A328A 0.13 TCGA-MX-A5UJ-01 11 14284449 14284449 C T RP11-21L19.1 RNA 0.24 TCGA-MX-A5UJ-01 11 1579342 1579342 C T DUSP8 Missense_Mutation p.D233N 0.21 deleterious(0.02) possibly_damaging(0.732) TCGA-MX-A5UJ-01 11 16812676 16812676 G A PLEKHA7 Missense_Mutation p.P939L 0.26 deleterious(0.02) probably_damaging(1) TCGA-MX-A5UJ-01 11 17409064 17409064 C T KCNJ11 Missense_Mutation p.R192H 0.13 deleterious(0) probably_damaging(0.999) TCGA-MX-A5UJ-01 11 17741551 17741551 C T MYOD1 Silent p.G74G 0.50 TCGA-MX-A5UJ-01 11 18158906 18158906 G T MRGPRX3 Missense_Mutation p.G53C 0.19 deleterious(0.02) probably_damaging(0.926) TCGA-MX-A5UJ-01 11 18194972 18194972 C T MRGPRX4 Missense_Mutation p.R57C 0.08 deleterious(0.04) benign(0.12) TCGA-MX-A5UJ-01 11 18637238 18637245 GCTCTTCT - SPTY2D1 Frame_Shift_Del p.E193Tfs*8 0.17 TCGA-MX-A5UJ-01 11 1955842 1955842 C T TNNT3 Missense_Mutation p.R183C 0.32 deleterious(0.04) benign(0.105) TCGA-MX-A5UJ-01 11 2187733 2187733 G T TH Missense_Mutation p.R373S 0.24 tolerated(0.08) benign(0.21) TCGA-MX-A5UJ-01 11 25004757 25004757 T C LUZP2 Missense_Mutation p.L228S 0.16 deleterious_low_confidence(0) benign(0.347) TCGA-MX-A5UJ-01 11 27389971 27389971 A - LGR4 Frame_Shift_Del p.S767Hfs*5 0.15 TCGA-MX-A5UJ-01 11 30937104 30937104 T A DCDC1 Nonsense_Mutation p.K1203* 0.13 TCGA-MX-A5UJ-01 11 32979423 32979423 A G QSER1 Missense_Mutation p.Q1458R 0.12 tolerated(0.12) benign(0.07) TCGA-MX-A5UJ-01 11 34192577 34192577 C T ABTB2 Missense_Mutation p.R480Q 0.17 tolerated(0.58) benign(0) TCGA-MX-A5UJ-01 11 34916648 34916648 G A APIP Missense_Mutation p.H23Y 0.08 deleterious(0) possibly_damaging(0.883) TCGA-MX-A5UJ-01 11 35198159 35198159 C T CD44 Silent p.H35H 0.18 TCGA-MX-A5UJ-01 11 35641227 35641227 G A FJX1 Missense_Mutation p.R348Q 0.30 deleterious(0) probably_damaging(0.998) TCGA-MX-A5UJ-01 11 375700 375700 G - B4GALNT4 Frame_Shift_Del p.R307Vfs*100 0.17 TCGA-MX-A5UJ-01 11 380009 380009 C T B4GALNT4 Missense_Mutation p.R878C 0.11 deleterious(0.01) unknown(0) TCGA-MX-A5UJ-01 11 46709742 46709742 C T ARHGAP1 Missense_Mutation p.D100N 0.11 tolerated(0.68) possibly_damaging(0.539) TCGA-MX-A5UJ-01 11 47431843 47431843 C T SLC39A13 Silent p.D66D 0.24 TCGA-MX-A5UJ-01 11 51412089 51412089 G A OR4A5 Missense_Mutation p.H103Y 0.20 deleterious_low_confidence(0.01) benign(0.224) TCGA-MX-A5UJ-01 11 5444082 5444082 A G OR51Q1 Missense_Mutation p.I218V 0.21 tolerated(0.35) benign(0.004) TCGA-MX-A5UJ-01 11 55322675 55322675 C T OR4C15 Missense_Mutation p.A298V 0.22 deleterious_low_confidence(0.03) benign(0.192) TCGA-MX-A5UJ-01 11 56000375 56000375 T C OR5T2 Missense_Mutation p.K96R 0.14 deleterious(0.01) benign(0.045) TCGA-MX-A5UJ-01 11 57995473 57995473 G A OR10Q1 Missense_Mutation p.P292L 0.09 deleterious(0) probably_damaging(1) TCGA-MX-A5UJ-01 11 6023294 6023294 A G OR56A4 Missense_Mutation p.L362P 0.20 deleterious(0.01) benign(0.132) TCGA-MX-A5UJ-01 11 61090508 61090508 C T DDB1 Missense_Mutation p.R327H 0.17 tolerated(0.08) benign(0.189) TCGA-MX-A5UJ-01 11 61295431 61295431 C T SYT7 Missense_Mutation p.R268Q 0.23 deleterious(0) probably_damaging(0.95) TCGA-MX-A5UJ-01 11 61404412 61404412 C A RPLP0P2 RNA 0.23 TCGA-MX-A5UJ-01 11 61547695 61547695 G A MYRF Missense_Mutation p.V780M 0.16 deleterious(0) probably_damaging(0.999) TCGA-MX-A5UJ-01 11 62186554 62186554 C - SCGB1A1 5'UTR 0.18 TCGA-MX-A5UJ-01 11 62298376 62298376 G A AHNAK Silent p.L1171L 0.20 TCGA-MX-A5UJ-01 11 62298897 62298897 T C AHNAK Missense_Mutation p.M998V 0.18 possibly_damaging(0.805) TCGA-MX-A5UJ-01 11 6232266 6232266 C T C11orf42 Silent p.D332D 0.06 TCGA-MX-A5UJ-01 11 62416131 62416131 A - INTS5 Frame_Shift_Del p.L474* 0.22 TCGA-MX-A5UJ-01 11 62430741 62430741 G A C11orf48 Missense_Mutation p.P243L 0.14 deleterious_low_confidence(0) probably_damaging(0.96) TCGA-MX-A5UJ-01 11 62455493 62455493 C T LRRN4CL Missense_Mutation p.R163H 0.12 tolerated(0.55) benign(0.003) TCGA-MX-A5UJ-01 11 6265622 6265622 C - CNGA4 Frame_Shift_Del p.P572Qfs*? 0.12 TCGA-MX-A5UJ-01 11 63072237 63072237 T - SLC22A10 Frame_Shift_Del p.F493Lfs*61 0.25 TCGA-MX-A5UJ-01 11 639854 639854 T C DRD4 Missense_Mutation p.F202S 0.20 deleterious(0) unknown(0) TCGA-MX-A5UJ-01 11 64013998 64013998 C G PPP1R14B Missense_Mutation p.V50L 0.16 tolerated(0.7) benign(0.087) TCGA-MX-A5UJ-01 11 64336241 64336241 C T SLC22A11 Missense_Mutation p.T458M 0.19 deleterious(0) probably_damaging(1) TCGA-MX-A5UJ-01 11 64415706 64415706 G T NRXN2 Missense_Mutation p.P1130T 0.05 tolerated(0.26) probably_damaging(0.993) TCGA-MX-A5UJ-01 11 65272638 65272639 - T MALAT1 RNA 0.23 TCGA-MX-A5UJ-01 11 65341234 65341234 G A FAM89B 3'UTR 0.29 TCGA-MX-A5UJ-01 11 65546370 65546370 C A AP5B1 Missense_Mutation p.G532C 0.19 tolerated(0.1) probably_damaging(0.997) TCGA-MX-A5UJ-01 11 65810901 65810901 C T GAL3ST3 Missense_Mutation p.V125M 0.27 tolerated(0.05) benign(0.012) TCGA-MX-A5UJ-01 11 6592532 6592532 G A DNHD1 Missense_Mutation p.R4597H 0.14 benign(0.04) TCGA-MX-A5UJ-01 11 66105143 66105143 C T BRMS1 Missense_Mutation p.S290N 0.27 deleterious_low_confidence(0.02) benign(0.135) TCGA-MX-A5UJ-01 11 66293622 66293622 G A BBS1 Missense_Mutation p.R380Q 0.25 tolerated(0.14) possibly_damaging(0.815) TCGA-MX-A5UJ-01 11 66372848 66372848 C T CCS Silent p.D176D 0.13 TCGA-MX-A5UJ-01 11 66373195 66373195 C T CCS Missense_Mutation p.R232C 0.21 deleterious(0) probably_damaging(1) TCGA-MX-A5UJ-01 11 66610729 66610729 C T C11orf80 3'UTR 0.12 TCGA-MX-A5UJ-01 11 66626495 66626495 G A LRFN4 Missense_Mutation p.R427Q 0.26 tolerated(0.07) benign(0.022) TCGA-MX-A5UJ-01 11 67266123 67266123 C T PITPNM1 Silent p.A476A 0.16 TCGA-MX-A5UJ-01 11 67372123 67372123 T G C11orf72 Missense_Mutation p.S140R 0.36 possibly_damaging(0.504) TCGA-MX-A5UJ-01 11 67377010 67377010 G A NDUFV1 Silent p.L138L 0.21 TCGA-MX-A5UJ-01 11 67934457 67934457 T - SUV420H1 Frame_Shift_Del p.N389Tfs*13 0.24 TCGA-MX-A5UJ-01 11 68115451 68115451 C A LRP5 Silent p.A76A 0.28 TCGA-MX-A5UJ-01 11 686996 686996 G A DEAF1 Silent p.G222G 0.24 TCGA-MX-A5UJ-01 11 71202892 71202892 G A NADSYN1 Silent p.A569A 0.13 TCGA-MX-A5UJ-01 11 71740259 71740259 A G NUMA1 Silent p.I40I 0.10 TCGA-MX-A5UJ-01 11 71946964 71946964 C T INPPL1 Missense_Mutation p.P938L 0.27 tolerated(0.26) benign(0.001) TCGA-MX-A5UJ-01 11 71952223 71952223 C T PHOX2A Missense_Mutation p.A110T 0.19 deleterious(0.01) benign(0.229) TCGA-MX-A5UJ-01 11 72554644 72554644 T C FCHSD2 Intron 0.24 TCGA-MX-A5UJ-01 11 72945484 72945484 G A P2RY2 Missense_Mutation p.A94T 0.16 deleterious(0) possibly_damaging(0.613) TCGA-MX-A5UJ-01 11 76371763 76371763 C T LRRC32 Missense_Mutation p.A292T 0.16 tolerated(0.41) benign(0.002) TCGA-MX-A5UJ-01 11 764817 764817 G A TALDO1 Missense_Mutation p.R329Q 0.19 tolerated(0.22) benign(0) TCGA-MX-A5UJ-01 11 76885962 76885962 T C MYO7A Splice_Site p.X698_splice 0.25 TCGA-MX-A5UJ-01 11 77933207 77933207 G A GAB2 Silent p.T534T 0.23 TCGA-MX-A5UJ-01 11 85694909 85694909 C T PICALM Missense_Mutation p.G506S 0.14 tolerated(0.65) benign(0.01) TCGA-MX-A5UJ-01 11 85989429 85989429 T - EED Intron 0.20 TCGA-MX-A5UJ-01 11 88027629 88027629 C T CTSC Missense_Mutation p.D313N 0.17 deleterious(0) probably_damaging(0.993) TCGA-MX-A5UJ-01 11 89951324 89951324 C T CHORDC1 Silent p.P31P 0.10 TCGA-MX-A5UJ-01 11 903005 903005 C T CHID1 Missense_Mutation p.R98Q 0.18 tolerated(0.19) benign(0.003) TCGA-MX-A5UJ-01 11 9048995 9048996 - G SCUBE2 Frame_Shift_Ins p.K816Qfs*10 0.18 TCGA-MX-A5UJ-01 11 9225550 9225550 G A DENND5A Silent p.Y202Y 0.17 TCGA-MX-A5UJ-01 11 92600150 92600150 C T FAT3 Missense_Mutation p.R3968C 0.16 possibly_damaging(0.846) TCGA-MX-A5UJ-01 11 9431557 9431557 T G IPO7 Missense_Mutation p.F135V 0.24 tolerated(0.3) benign(0.004) TCGA-MX-A5UJ-01 11 94554825 94554825 T C AMOTL1 Silent p.A417A 0.20 TCGA-MX-A5UJ-01 11 95825914 95825914 C T MAML2 Nonsense_Mutation p.W427* 0.30 TCGA-MX-A5UJ-01 11 988612 988612 C T AP2A2 Missense_Mutation p.R398C 0.22 deleterious(0.03) benign(0.152) TCGA-MX-A5UJ-01 12 100043249 100043249 T C FAM71C 3'UTR 0.20 TCGA-MX-A5UJ-01 12 102471194 102471194 G A NUP37 Missense_Mutation p.P210S 0.19 deleterious(0.01) probably_damaging(0.978) TCGA-MX-A5UJ-01 12 104388145 104388145 C T GLT8D2 Silent p.K245K 0.29 TCGA-MX-A5UJ-01 12 105151591 105151591 G A CHST11 3'UTR 0.16 TCGA-MX-A5UJ-01 12 106460547 106460547 G A NUAK1 3'UTR 0.09 TCGA-MX-A5UJ-01 12 107713778 107713778 C T BTBD11 Missense_Mutation p.T354M 0.30 tolerated(0.09) possibly_damaging(0.7) TCGA-MX-A5UJ-01 12 108926084 108926084 C T SART3 Missense_Mutation p.R528Q 0.22 deleterious(0) probably_damaging(0.999) TCGA-MX-A5UJ-01 12 108985651 108985651 C T TMEM119 Missense_Mutation p.R170Q 0.20 tolerated(1) benign(0.001) TCGA-MX-A5UJ-01 12 109703292 109703292 G A ACACB Silent p.T2404T 0.13 TCGA-MX-A5UJ-01 12 109961809 109961809 A G UBE3B Silent p.A797A 0.17 TCGA-MX-A5UJ-01 12 109972445 109972445 G A UBE3B Missense_Mutation p.R1022H 0.21 deleterious(0) probably_damaging(0.998) TCGA-MX-A5UJ-01 12 110019240 110019240 C - MVK Frame_Shift_Del p.A141Rfs*18 0.25 TCGA-MX-A5UJ-01 12 110350854 110350854 G A TCHP Missense_Mutation p.A371T 0.14 deleterious(0) probably_damaging(1) TCGA-MX-A5UJ-01 12 110397663 110397663 G A GIT2 Missense_Mutation p.S363L 0.17 tolerated(0.37) benign(0) TCGA-MX-A5UJ-01 12 11091592 11091592 A - TAS2R14 Frame_Shift_Del p.F72Sfs*20 0.15 TCGA-MX-A5UJ-01 12 112219775 112219775 C T ALDH2 Silent p.T56T 0.17 TCGA-MX-A5UJ-01 12 113553778 113553779 GA - RASAL1 Frame_Shift_Del p.L270Hfs*18 0.19 TCGA-MX-A5UJ-01 12 113728027 113728027 G A TPCN1 Missense_Mutation p.D703N 0.27 tolerated(0.2) benign(0.065) TCGA-MX-A5UJ-01 12 113758489 113758489 G A SLC8B1 Silent p.G141G 0.12 TCGA-MX-A5UJ-01 12 117595755 117595755 G A FBXO21 Silent p.G487G 0.10 TCGA-MX-A5UJ-01 12 120190038 120190038 G A CIT Silent p.H907H 0.21 TCGA-MX-A5UJ-01 12 121438947 121438947 C T HNF1A Silent p.S616S 0.19 TCGA-MX-A5UJ-01 12 121881881 121881881 A G KDM2B Silent p.S795S 0.17 TCGA-MX-A5UJ-01 12 122361764 122361764 C T WDR66 Silent p.N205N 0.14 TCGA-MX-A5UJ-01 12 122958812 122958812 T C ZCCHC8 Silent p.V452V 0.19 TCGA-MX-A5UJ-01 12 123466540 123466540 T C ARL6IP4 Missense_Mutation p.M292T 0.22 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-MX-A5UJ-01 12 124821509 124821509 C T NCOR2 Missense_Mutation p.A1969T 0.12 benign(0.095) TCGA-MX-A5UJ-01 12 124887049 124887049 C T NCOR2 Missense_Mutation p.R514H 0.26 unknown(0) TCGA-MX-A5UJ-01 12 125279752 125279752 G A SCARB1 Silent p.V397V 0.20 TCGA-MX-A5UJ-01 12 130922927 130922927 A G RIMBP2 Missense_Mutation p.Y530H 0.17 deleterious(0) probably_damaging(0.916) TCGA-MX-A5UJ-01 12 132528749 132528749 T C EP400 Missense_Mutation p.W2160R 0.08 unknown(0) TCGA-MX-A5UJ-01 12 13715900 13715900 A G GRIN2B Silent p.L1424L 0.23 TCGA-MX-A5UJ-01 12 2017138 2017138 G A CACNA2D4 Silent p.G184G 0.28 TCGA-MX-A5UJ-01 12 21997480 21997480 A - ABCC9 Frame_Shift_Del p.F1084Lfs*8 0.15 TCGA-MX-A5UJ-01 12 25308293 25308293 A G CASC1 Silent p.C84C 0.19 TCGA-MX-A5UJ-01 12 26572103 26572103 C T ITPR2 Missense_Mutation p.R2330H 0.20 tolerated(0.06) probably_damaging(0.965) TCGA-MX-A5UJ-01 12 26750044 26750044 C T ITPR2 Silent p.V1342V 0.19 TCGA-MX-A5UJ-01 12 2676929 2676929 G A CACNA1C Missense_Mutation p.V622I 0.20 tolerated(0.34) benign(0.358) TCGA-MX-A5UJ-01 12 27462124 27462124 A G STK38L Silent p.K129K 0.28 TCGA-MX-A5UJ-01 12 29474809 29474809 G A FAR2 Silent p.T403T 0.12 TCGA-MX-A5UJ-01 12 30906514 30906515 AA - CAPRIN2 Frame_Shift_Del p.S62Ifs*57 0.19 TCGA-MX-A5UJ-01 12 39734129 39734129 T - KIF21A Frame_Shift_Del p.V717Lfs*12 0.36 TCGA-MX-A5UJ-01 12 40020151 40020151 G - C12orf40 Frame_Shift_Del p.S7Pfs*6 0.15 TCGA-MX-A5UJ-01 12 416769 416769 G A KDM5A Missense_Mutation p.R1261W 0.25 deleterious(0) probably_damaging(0.999) TCGA-MX-A5UJ-01 12 45810550 45810550 A G ANO6 Missense_Mutation p.N715D 0.15 deleterious(0) probably_damaging(1) TCGA-MX-A5UJ-01 12 48174180 48174183 ACAC - SLC48A1 3'UTR 0.18 TCGA-MX-A5UJ-01 12 48387250 48387250 C T COL2A1 Silent p.P320P 0.19 TCGA-MX-A5UJ-01 12 48921844 48921844 C T OR8S1 Silent p.C346C 0.24 TCGA-MX-A5UJ-01 12 49719342 49719342 A G TROAP Silent p.S132S 0.10 TCGA-MX-A5UJ-01 12 52649854 52649854 C T KRT121P RNA 0.16 TCGA-MX-A5UJ-01 12 52758883 52758883 G A KRT85 Silent p.C164C 0.10 TCGA-MX-A5UJ-01 12 52760962 52760962 G A KRT85 Silent p.C76C 0.32 TCGA-MX-A5UJ-01 12 53189685 53189685 C T KRT3 Missense_Mutation p.G48R 0.19 tolerated(0.07) unknown(0) TCGA-MX-A5UJ-01 12 53579255 53579255 A - ZNF740 Frame_Shift_Del p.K83Rfs*4 0.18 TCGA-MX-A5UJ-01 12 53682904 53682904 C - ESPL1 Frame_Shift_Del p.L1581* 0.15 TCGA-MX-A5UJ-01 12 54348983 54348983 C T HOXC12 Silent p.D90D 0.19 TCGA-MX-A5UJ-01 12 54403314 54403314 C T HOXC8 Silent p.H82H 0.19 TCGA-MX-A5UJ-01 12 54403315 54403315 G A HOXC8 Missense_Mutation p.G83R 0.21 deleterious(0.03) possibly_damaging(0.572) TCGA-MX-A5UJ-01 12 54757554 54757554 C - GPR84 Frame_Shift_Del p.V28Wfs*5 0.13 TCGA-MX-A5UJ-01 12 56721241 56721241 G A PAN2 Missense_Mutation p.R276C 0.22 deleterious(0) probably_damaging(0.999) TCGA-MX-A5UJ-01 12 57556255 57556256 - C LRP1 Frame_Shift_Ins p.I789Hfs*3 0.12 TCGA-MX-A5UJ-01 12 57584745 57584745 A G LRP1 Missense_Mutation p.T2397A 0.24 probably_damaging(0.998) TCGA-MX-A5UJ-01 12 57860075 57860075 G - GLI1 Frame_Shift_Del p.G274Afs*6 0.25 TCGA-MX-A5UJ-01 12 57921401 57921401 C - MBD6 Frame_Shift_Del p.Q734Nfs*18 0.23 TCGA-MX-A5UJ-01 12 653594 653594 C - B4GALNT3 Frame_Shift_Del p.H149Ifs*6 0.21 TCGA-MX-A5UJ-01 12 66704208 66704208 A - HELB Frame_Shift_Del p.A503Pfs*24 0.17 TCGA-MX-A5UJ-01 12 6702659 6702659 G A CHD4 Missense_Mutation p.R813C 0.16 deleterious(0) probably_damaging(0.965) TCGA-MX-A5UJ-01 12 6761828 6761828 G A ING4 Missense_Mutation p.T167I 0.21 tolerated(0.2) benign(0.004) TCGA-MX-A5UJ-01 12 6761832 6761832 G A ING4 Missense_Mutation p.R166C 0.09 tolerated(0.05) possibly_damaging(0.462) TCGA-MX-A5UJ-01 12 68642482 68642482 A G IL22 3'UTR 0.27 TCGA-MX-A5UJ-01 12 6887523 6887523 G A LAG3 Silent p.E515E 0.25 TCGA-MX-A5UJ-01 12 6887526 6887526 C G LAG3 Silent p.P516P 0.26 TCGA-MX-A5UJ-01 12 69084528 69084528 T C NUP107 Splice_Site p.X101_splice 0.18 TCGA-MX-A5UJ-01 12 70091534 70091534 A - BEST3 Frame_Shift_Del p.F15Lfs*32 0.20 TCGA-MX-A5UJ-01 12 70948992 70948992 G A PTPRB Silent p.S1697S 0.26 TCGA-MX-A5UJ-01 12 71531768 71531769 - T TSPAN8 Frame_Shift_Ins p.Q137Tfs*14 0.16 TCGA-MX-A5UJ-01 12 7362639 7362639 G A PEX5 Silent p.L595L 0.18 TCGA-MX-A5UJ-01 12 7551003 7551003 G A CD163L1 Missense_Mutation p.T529I 0.21 tolerated(0.08) possibly_damaging(0.633) TCGA-MX-A5UJ-01 12 7848210 7848210 G A GDF3 Missense_Mutation p.P39S 0.23 deleterious(0.02) possibly_damaging(0.48) TCGA-MX-A5UJ-01 12 79611356 79611356 G A SYT1 Silent p.A19A 0.09 TCGA-MX-A5UJ-01 12 8377454 8377454 C T FAM90A1 5'UTR 0.09 TCGA-MX-A5UJ-01 12 90020290 90020290 T - ATP2B1 Frame_Shift_Del p.K357Rfs*23 0.19 TCGA-MX-A5UJ-01 12 9261917 9261917 A G A2M Missense_Mutation p.L253P 0.19 deleterious(0.02) benign(0.308) TCGA-MX-A5UJ-01 12 93793060 93793060 G A NUDT4 Missense_Mutation p.A151T 0.08 tolerated(1) benign(0.001) TCGA-MX-A5UJ-01 12 96107008 96107008 C - NTN4 Frame_Shift_Del p.A325Lfs*76 0.18 TCGA-MX-A5UJ-01 13 102375253 102375253 C T FGF14 Silent p.T229T 0.11 TCGA-MX-A5UJ-01 13 103514840 103514840 G A BIVM-ERCC5 Silent p.A873A 0.15 TCGA-MX-A5UJ-01 13 113899470 113899470 C T CUL4A Silent p.C483C 0.24 TCGA-MX-A5UJ-01 13 114762033 114762033 C T RASA3 Silent p.S705S 0.24 TCGA-MX-A5UJ-01 13 22077129 22077129 A - MICU2 Frame_Shift_Del p.F290Sfs*14 0.27 TCGA-MX-A5UJ-01 13 23909033 23909033 A G SACS Silent p.P2994P 0.13 TCGA-MX-A5UJ-01 13 25486837 25486837 C T CENPJ Silent p.A109A 0.20 TCGA-MX-A5UJ-01 13 27847276 27847276 G A RASL11A Missense_Mutation p.R125Q 0.18 tolerated(0.53) benign(0.202) TCGA-MX-A5UJ-01 13 29608233 29608233 C T MTUS2 Missense_Mutation p.A816V 0.14 tolerated(0.05) possibly_damaging(0.651) TCGA-MX-A5UJ-01 13 32981416 32981416 C T N4BP2L1 Missense_Mutation p.A123T 0.26 deleterious(0) possibly_damaging(0.701) TCGA-MX-A5UJ-01 13 35619165 35619165 G A NBEA Missense_Mutation p.R203Q 0.25 tolerated(1) benign(0.003) TCGA-MX-A5UJ-01 13 36776105 36776105 C T SOHLH2 Silent p.A135A 0.12 TCGA-MX-A5UJ-01 13 39424219 39424219 A C FREM2 Missense_Mutation p.S2142R 0.22 tolerated(0.13) benign(0.131) TCGA-MX-A5UJ-01 13 41134524 41134524 G A FOXO1 Silent p.P368P 0.19 TCGA-MX-A5UJ-01 13 41705685 41705685 A G KBTBD6 Silent p.S321S 0.16 TCGA-MX-A5UJ-01 13 41767067 41767067 G A KBTBD7 Nonsense_Mutation p.R443* 0.25 TCGA-MX-A5UJ-01 13 45983157 45983157 C T SLC25A30 Silent p.T39T 0.29 TCGA-MX-A5UJ-01 13 46287584 46287584 C A SPERT Missense_Mutation p.L142M 0.14 deleterious(0.02) probably_damaging(0.978) TCGA-MX-A5UJ-01 13 46539504 46539504 T C ZC3H13 Missense_Mutation p.Y1462C 0.24 unknown(0) TCGA-MX-A5UJ-01 13 49854811 49854811 C T CDADC1 Missense_Mutation p.L463F 0.33 deleterious(0.01) possibly_damaging(0.77) TCGA-MX-A5UJ-01 13 50495667 50495667 T - SPRYD7 Frame_Shift_Del p.N147Tfs*56 0.24 TCGA-MX-A5UJ-01 13 51417426 51417426 G A DLEU7 Silent p.S119S 0.19 TCGA-MX-A5UJ-01 13 78143516 78143516 G A SCEL Missense_Mutation p.G137S 0.24 tolerated(0.54) benign(0.036) TCGA-MX-A5UJ-01 13 79177342 79177342 C T POU4F1 Silent p.P40P 0.34 TCGA-MX-A5UJ-01 13 95279412 95279412 G A GPR180 Missense_Mutation p.R437H 0.17 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-MX-A5UJ-01 13 98828609 98828609 G A RNF113B Silent p.D294D 0.21 TCGA-MX-A5UJ-01 13 98828654 98828654 G A RNF113B Silent p.C279C 0.22 TCGA-MX-A5UJ-01 13 99098451 99098451 T A FARP1 Missense_Mutation p.S966T 0.22 tolerated(1) benign(0.047) TCGA-MX-A5UJ-01 14 102028809 102028809 G A DIO3 3'UTR 0.19 TCGA-MX-A5UJ-01 14 102476415 102476416 - T DYNC1H1 Frame_Shift_Ins p.K2074* 0.23 TCGA-MX-A5UJ-01 14 102478748 102478748 C T DYNC1H1 Silent p.L2319L 0.26 TCGA-MX-A5UJ-01 14 102506020 102506021 - T DYNC1H1 Frame_Shift_Ins p.T3882Yfs*32 0.23 TCGA-MX-A5UJ-01 14 102676082 102676082 G A WDR20 Silent p.P556P 0.20 TCGA-MX-A5UJ-01 14 102793200 102793201 AG - ZNF839 Frame_Shift_Del p.E390Vfs*15 0.32 TCGA-MX-A5UJ-01 14 104639485 104639485 G A KIF26A Missense_Mutation p.R531Q 0.34 tolerated(0.09) probably_damaging(0.995) TCGA-MX-A5UJ-01 14 105179880 105179880 C T INF2 Missense_Mutation p.R993C 0.15 deleterious(0) unknown(0) TCGA-MX-A5UJ-01 14 105415952 105415952 C T AHNAK2 Missense_Mutation p.D1946N 0.23 benign(0.11) TCGA-MX-A5UJ-01 14 105614701 105614701 G A JAG2 Missense_Mutation p.A699V 0.27 tolerated(0.09) benign(0.026) TCGA-MX-A5UJ-01 14 105684029 105684029 C T BRF1 Missense_Mutation p.V542M 0.12 deleterious(0) probably_damaging(0.998) TCGA-MX-A5UJ-01 14 105995472 105995472 C T TMEM121 Missense_Mutation p.R101W 0.23 deleterious(0) possibly_damaging(0.859) TCGA-MX-A5UJ-01 14 23517658 23517658 C T CDH24 Missense_Mutation p.R664Q 0.27 tolerated(0.11) benign(0.061) TCGA-MX-A5UJ-01 14 23528449 23528449 G A ACIN1 Nonsense_Mutation p.R1312* 0.28 TCGA-MX-A5UJ-01 14 23745371 23745371 G A HOMEZ Missense_Mutation p.R356C 0.24 deleterious(0) possibly_damaging(0.855) TCGA-MX-A5UJ-01 14 23873938 23873938 G A MYH6 Silent p.D208D 0.25 TCGA-MX-A5UJ-01 14 24458148 24458148 G A DHRS4L2 5'UTR 0.30 TCGA-MX-A5UJ-01 14 24532727 24532727 A G LRRC16B Silent p.G988G 0.15 TCGA-MX-A5UJ-01 14 24572735 24572735 C T PCK2 Silent p.H495H 0.17 TCGA-MX-A5UJ-01 14 24588364 24588364 C T DCAF11 Missense_Mutation p.R264C 0.19 deleterious(0.01) possibly_damaging(0.772) TCGA-MX-A5UJ-01 14 24621180 24621180 C T RNF31 Silent p.G703G 0.35 TCGA-MX-A5UJ-01 14 24718708 24718708 C T TGM1 Silent p.S755S 0.10 TCGA-MX-A5UJ-01 14 24724696 24724696 G A TGM1 Missense_Mutation p.R507W 0.21 deleterious(0) probably_damaging(0.999) TCGA-MX-A5UJ-01 14 33291535 33291535 A - AKAP6 Frame_Shift_Del p.K1507Nfs*40 0.20 TCGA-MX-A5UJ-01 14 35779976 35779976 G A PSMA6 Missense_Mutation p.R95H 0.19 deleterious(0) probably_damaging(0.996) TCGA-MX-A5UJ-01 14 36005036 36005036 G A INSM2 Silent p.S526S 0.21 TCGA-MX-A5UJ-01 14 36005057 36005057 T - INSM2 Frame_Shift_Del p.F535Lfs*6 0.20 TCGA-MX-A5UJ-01 14 37132621 37132621 C T PAX9 Missense_Mutation p.T175M 0.13 deleterious(0.01) probably_damaging(0.996) TCGA-MX-A5UJ-01 14 45706910 45706910 C A MIS18BP1 Missense_Mutation p.Q386H 0.19 deleterious(0.01) probably_damaging(0.979) TCGA-MX-A5UJ-01 14 47566079 47566080 - T MDGA2 Frame_Shift_Ins p.S392Vfs*25 0.21 TCGA-MX-A5UJ-01 14 51237236 51237236 T - NIN Frame_Shift_Del p.N435Mfs*19 0.19 TCGA-MX-A5UJ-01 14 51464799 51464799 G A TRIM9 Silent p.Y524Y 0.18 TCGA-MX-A5UJ-01 14 53178229 53178229 G A PSMC6 Missense_Mutation p.R157Q 0.21 tolerated(0.12) benign(0.193) TCGA-MX-A5UJ-01 14 59112383 59112383 A - DACT1 Frame_Shift_Del p.T350Hfs*4 0.13 TCGA-MX-A5UJ-01 14 59730277 59730277 T C DAAM1 Missense_Mutation p.Y28H 0.11 tolerated(0.18) unknown(0) TCGA-MX-A5UJ-01 14 59790880 59790880 G A DAAM1 Missense_Mutation p.R270Q 0.11 tolerated(0.24) unknown(0) TCGA-MX-A5UJ-01 14 61858002 61858002 T C PRKCH Silent p.T141T 0.15 TCGA-MX-A5UJ-01 14 63511946 63511946 G - KCNH5 5'UTR 0.21 TCGA-MX-A5UJ-01 14 64522809 64522809 C T SYNE2 Nonsense_Mutation p.R3298* 0.20 TCGA-MX-A5UJ-01 14 68047726 68047726 A G PLEKHH1 Silent p.T1085T 0.15 TCGA-MX-A5UJ-01 14 69806334 69806334 C A GALNT16 Silent p.G395G 0.14 TCGA-MX-A5UJ-01 14 69818926 69818926 C T GALNT16 Intron 0.17 TCGA-MX-A5UJ-01 14 70926261 70926261 T - ADAM21 Frame_Shift_Del p.L684Cfs*3 0.18 TCGA-MX-A5UJ-01 14 76108219 76108222 CAAA - FLVCR2 Frame_Shift_Del p.N497Kfs*59 0.20 TCGA-MX-A5UJ-01 14 76135819 76135819 T C TTLL5 Silent p.H45H 0.21 TCGA-MX-A5UJ-01 14 76243055 76243057 TTG - TTLL5 Intron 0.26 TCGA-MX-A5UJ-01 14 77297613 77297613 A G C14orf166B Silent p.V95V 0.05 TCGA-MX-A5UJ-01 14 81297570 81297570 C T CEP128 Missense_Mutation p.A376T 0.22 tolerated(0.19) benign(0.006) TCGA-MX-A5UJ-01 14 90744664 90744664 G A NRDE2 3'UTR 0.24 TCGA-MX-A5UJ-01 14 91662735 91662735 G T C14orf159 Missense_Mutation p.Q404H 0.30 tolerated(0.14) benign(0.012) TCGA-MX-A5UJ-01 14 92900274 92900274 C T SLC24A4 Missense_Mutation p.T87I 0.14 tolerated(0.09) benign(0.025) TCGA-MX-A5UJ-01 14 93760615 93760615 G A BTBD7 Missense_Mutation p.L251F 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-MX-A5UJ-01 14 94754718 94754718 C T SERPINA10 Silent p.L299L 0.16 TCGA-MX-A5UJ-01 14 94849521 94849521 C A SERPINA1 Silent p.L18L 0.12 TCGA-MX-A5UJ-01 14 95030079 95030079 C T SERPINA4 Missense_Mutation p.A87V 0.19 deleterious(0.03) benign(0.403) TCGA-MX-A5UJ-01 14 95932331 95932331 G A SYNE3 Silent p.S188S 0.17 TCGA-MX-A5UJ-01 14 99642248 99642248 G A BCL11B Missense_Mutation p.R309C 0.42 deleterious(0) benign(0.003) TCGA-MX-A5UJ-01 15 101109610 101109610 C T LINS Missense_Mutation p.V703I 0.15 tolerated(0.78) benign(0.006) TCGA-MX-A5UJ-01 15 22999391 22999391 G A CYFIP1 Missense_Mutation p.C1088Y 0.24 deleterious(0.02) probably_damaging(0.961) TCGA-MX-A5UJ-01 15 27571973 27571974 - T GABRG3 Frame_Shift_Ins p.A99Cfs*7 0.21 TCGA-MX-A5UJ-01 15 28422200 28422200 G A HERC2 Missense_Mutation p.H3110Y 0.32 probably_damaging(1) TCGA-MX-A5UJ-01 15 28474423 28474423 G A HERC2 Silent p.V1730V 0.09 TCGA-MX-A5UJ-01 15 33941407 33941407 A G RYR3 Silent p.L1371L 0.18 TCGA-MX-A5UJ-01 15 33999177 33999177 G T RYR3 Nonsense_Mutation p.G2181* 0.20 TCGA-MX-A5UJ-01 15 34049779 34049779 A C RYR3 Missense_Mutation p.E2896A 0.17 probably_damaging(0.999) TCGA-MX-A5UJ-01 15 40750914 40750914 G A BAHD1 Missense_Mutation p.R84Q 0.09 tolerated(0.34) benign(0.001) TCGA-MX-A5UJ-01 15 40865841 40865841 G A RPUSD2 Missense_Mutation p.R340Q 0.28 tolerated(0.14) benign(0.015) TCGA-MX-A5UJ-01 15 41800306 41800306 C T LTK Missense_Mutation p.E404K 0.17 deleterious_low_confidence(0.01) probably_damaging(0.98) TCGA-MX-A5UJ-01 15 43699545 43699545 G A TP53BP1 3'UTR 0.24 TCGA-MX-A5UJ-01 15 44093895 44093896 - T HYPK Intron 0.26 TCGA-MX-A5UJ-01 15 45433228 45433228 C T DUOX1 Missense_Mutation p.R509W 0.30 deleterious(0) probably_damaging(1) TCGA-MX-A5UJ-01 15 49426002 49426002 G A COPS2 Missense_Mutation p.P308S 0.09 deleterious(0.03) possibly_damaging(0.459) TCGA-MX-A5UJ-01 15 49611934 49611934 C T GALK2 Silent p.S367S 0.25 TCGA-MX-A5UJ-01 15 54630617 54630617 C A UNC13C Missense_Mutation p.A1548D 0.24 deleterious_low_confidence(0) probably_damaging(1) TCGA-MX-A5UJ-01 15 54919307 54919307 C A UNC13C Missense_Mutation p.A2214D 0.12 deleterious_low_confidence(0) benign(0.172) TCGA-MX-A5UJ-01 15 55912281 55912281 G A PRTG Missense_Mutation p.R1128W 0.24 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-MX-A5UJ-01 15 59009847 59009847 T - ADAM10 Frame_Shift_Del p.K45Nfs*18 0.14 TCGA-MX-A5UJ-01 15 63017304 63017304 G A TLN2 Splice_Site p.X1085_splice 0.19 TCGA-MX-A5UJ-01 15 63353438 63353438 A C TPM1 Missense_Mutation p.Q202P 0.29 deleterious(0) benign(0.445) TCGA-MX-A5UJ-01 15 63916430 63916430 G A HERC1 Missense_Mutation p.R4458C 0.24 probably_damaging(0.997) TCGA-MX-A5UJ-01 15 63958255 63958255 C T HERC1 Silent p.S2806S 0.28 TCGA-MX-A5UJ-01 15 63966685 63966685 G A HERC1 Nonsense_Mutation p.R2568* 0.29 TCGA-MX-A5UJ-01 15 65625736 65625736 C - IGDCC3 Frame_Shift_Del p.V281Wfs*17 0.28 TCGA-MX-A5UJ-01 15 67073596 67073596 G A SMAD6 Missense_Mutation p.R405H 0.21 deleterious(0) probably_damaging(1) TCGA-MX-A5UJ-01 15 68606193 68606193 G A ITGA11 Missense_Mutation p.R936W 0.20 deleterious(0) possibly_damaging(0.512) TCGA-MX-A5UJ-01 15 69325383 69325383 C T NOX5 Silent p.S207S 0.12 TCGA-MX-A5UJ-01 15 70351123 70351123 T C TLE3 Missense_Mutation p.H266R 0.36 tolerated(0.26) benign(0.055) TCGA-MX-A5UJ-01 15 72190814 72190814 G C MYO9A Missense_Mutation p.L1344V 0.09 tolerated_low_confidence(0.52) benign(0.004) TCGA-MX-A5UJ-01 15 72190846 72190846 A G MYO9A Missense_Mutation p.L1333P 0.09 deleterious_low_confidence(0) possibly_damaging(0.555) TCGA-MX-A5UJ-01 15 73617774 73617774 C A HCN4 Silent p.V534V 0.20 TCGA-MX-A5UJ-01 15 75122597 75122597 G A CPLX3 Missense_Mutation p.A127T 0.07 tolerated(1) benign(0.001) TCGA-MX-A5UJ-01 15 75499818 75499818 C - C15orf39 Frame_Shift_Del p.C479Vfs*86 0.21 TCGA-MX-A5UJ-01 15 76448997 76448997 T - C15orf27 Frame_Shift_Del p.L95Cfs*11 0.18 TCGA-MX-A5UJ-01 15 77907234 77907234 C T LINGO1 Missense_Mutation p.V339M 0.17 tolerated(0.16) possibly_damaging(0.745) TCGA-MX-A5UJ-01 15 78841212 78841212 A - PSMA4 Frame_Shift_Del p.K239Nfs*60 0.18 TCGA-MX-A5UJ-01 15 79229746 79229746 G A CTSH Missense_Mutation p.T48M 0.25 tolerated(0.2) benign(0.01) TCGA-MX-A5UJ-01 15 80873656 80873656 C T ARNT2 Missense_Mutation p.P610L 0.20 deleterious_low_confidence(0) possibly_damaging(0.713) TCGA-MX-A5UJ-01 15 81624809 81624809 C A TMC3 Missense_Mutation p.G1085V 0.21 tolerated_low_confidence(0.18) benign(0.025) TCGA-MX-A5UJ-01 15 83296089 83296089 G A CPEB1 Silent p.C15C 0.19 TCGA-MX-A5UJ-01 15 84506869 84506869 G T ADAMTSL3 Missense_Mutation p.S210I 0.16 deleterious(0) probably_damaging(0.999) TCGA-MX-A5UJ-01 15 89744977 89744977 C T ABHD2 3'UTR 0.19 TCGA-MX-A5UJ-01 15 90190851 90190851 G A KIF7 Silent p.D512D 0.21 TCGA-MX-A5UJ-01 15 90610713 90610713 A T ZNF710 Missense_Mutation p.E115V 0.16 deleterious_low_confidence(0.01) benign(0.001) TCGA-MX-A5UJ-01 15 91548976 91548976 G A VPS33B Silent p.F326F 0.07 TCGA-MX-A5UJ-01 15 99456418 99456418 G A IGF1R Missense_Mutation p.V579I 0.17 tolerated(1) benign(0.002) TCGA-MX-A5UJ-01 15 99478094 99478094 A G IGF1R Missense_Mutation p.T1000A 0.31 tolerated(0.17) benign(0.036) TCGA-MX-A5UJ-01 16 1035259 1035260 - C SOX8 Frame_Shift_Ins p.C407Lfs*73 0.22 TCGA-MX-A5UJ-01 16 10788424 10788424 G A TEKT5 Missense_Mutation p.R103C 0.05 tolerated(0.07) benign(0.071) TCGA-MX-A5UJ-01 16 15045485 15045485 C T NPIPA1 Missense_Mutation p.A219V 0.19 deleterious(0) probably_damaging(0.946) TCGA-MX-A5UJ-01 16 15690712 15690712 C T KIAA0430 Silent p.S1689S 0.23 TCGA-MX-A5UJ-01 16 16297397 16297397 G A ABCC6 Missense_Mutation p.R290W 0.22 deleterious(0.02) benign(0.001) TCGA-MX-A5UJ-01 16 2030038 2030038 C T NOXO1 Silent p.Q187Q 0.33 TCGA-MX-A5UJ-01 16 20976108 20976108 A G DNAH3 Missense_Mutation p.I3033T 0.25 deleterious(0) probably_damaging(0.931) TCGA-MX-A5UJ-01 16 20976633 20976633 C T DNAH3 Missense_Mutation p.R2858Q 0.13 tolerated(0.1) benign(0.298) TCGA-MX-A5UJ-01 16 2143071 2143071 A - PKD1 Frame_Shift_Del p.L3681Cfs*3 0.26 TCGA-MX-A5UJ-01 16 2231466 2231466 G A CASKIN1 Missense_Mutation p.P635S 0.20 benign(0.045) TCGA-MX-A5UJ-01 16 2286814 2286814 C A DNASE1L2 5'UTR 0.19 TCGA-MX-A5UJ-01 16 2331173 2331173 G A ABCA3 Missense_Mutation p.A1405V 0.18 tolerated(0.1) benign(0.011) TCGA-MX-A5UJ-01 16 2335445 2335445 G C ABCA3 Missense_Mutation p.L1161V 0.25 tolerated(0.09) benign(0.381) TCGA-MX-A5UJ-01 16 23392181 23392181 G A SCNN1B 3'UTR 0.24 TCGA-MX-A5UJ-01 16 23700887 23700887 C T PLK1 Missense_Mutation p.R500C 0.18 deleterious(0) benign(0.252) TCGA-MX-A5UJ-01 16 24942602 24942602 C T ARHGAP17 Missense_Mutation p.R673Q 0.25 tolerated_low_confidence(0.2) benign(0.238) TCGA-MX-A5UJ-01 16 27230332 27230332 C T KDM8 Silent p.G336G 0.15 TCGA-MX-A5UJ-01 16 2812424 2812424 G A SRRM2 Missense_Mutation p.R632Q 0.26 unknown(0) TCGA-MX-A5UJ-01 16 28843844 28843844 G T ATXN2L Missense_Mutation p.G515V 0.25 tolerated(0.09) benign(0.168) TCGA-MX-A5UJ-01 16 29821017 29821017 C - MAZ Frame_Shift_Del p.P481Lfs*44 0.39 TCGA-MX-A5UJ-01 16 3029753 3029753 C T PKMYT1 5'UTR 0.27 TCGA-MX-A5UJ-01 16 30409310 30409310 C - ZNF48 Frame_Shift_Del p.R249Dfs*43 0.21 TCGA-MX-A5UJ-01 16 30544331 30544331 C T ZNF747 3'UTR 0.37 TCGA-MX-A5UJ-01 16 30581624 30581624 C T ZNF688 Silent p.P148P 0.14 TCGA-MX-A5UJ-01 16 3065456 3065456 C - CLDN6 Frame_Shift_Del p.S190Pfs*70 0.21 TCGA-MX-A5UJ-01 16 30664276 30664276 G A PRR14 Missense_Mutation p.R119H 0.22 deleterious_low_confidence(0.04) benign(0.077) TCGA-MX-A5UJ-01 16 30904532 30904534 CCT - BCL7C Splice_Site p.X57_splice 0.10 TCGA-MX-A5UJ-01 16 31131779 31131779 C T KAT8 Missense_Mutation p.R136C 0.19 deleterious(0) probably_damaging(0.973) TCGA-MX-A5UJ-01 16 31341634 31341634 C A ITGAM Nonsense_Mutation p.C1023* 0.14 TCGA-MX-A5UJ-01 16 31927273 31927273 G A ZNF267 Missense_Mutation p.R568Q 0.16 tolerated(0.12) probably_damaging(0.97) TCGA-MX-A5UJ-01 16 3304310 3304310 G A MEFV Missense_Mutation p.A253V 0.21 tolerated(0.27) benign(0.013) TCGA-MX-A5UJ-01 16 3304438 3304438 C T MEFV Silent p.A210A 0.31 TCGA-MX-A5UJ-01 16 3458870 3458870 G A ZNF174 Missense_Mutation p.R392H 0.23 tolerated(0.06) probably_damaging(0.998) TCGA-MX-A5UJ-01 16 3544587 3544587 G A C16orf90 Missense_Mutation p.R113C 0.07 deleterious_low_confidence(0.01) benign(0.056) TCGA-MX-A5UJ-01 16 3708226 3708226 G A TRAP1 Silent p.Y673Y 0.13 TCGA-MX-A5UJ-01 16 3713660 3713660 G A TRAP1 Intron 0.20 TCGA-MX-A5UJ-01 16 3817721 3817721 T - CREBBP Frame_Shift_Del p.I1084Sfs*15 0.27 TCGA-MX-A5UJ-01 16 4016445 4016445 C T ADCY9 Silent p.P1131P 0.19 TCGA-MX-A5UJ-01 16 46990951 46990951 G A DNAJA2 Missense_Mutation p.A410V 0.18 deleterious(0.02) probably_damaging(0.98) TCGA-MX-A5UJ-01 16 47117549 47117549 G A NETO2 Silent p.T387T 0.29 TCGA-MX-A5UJ-01 16 47196555 47196555 C T ITFG1 Missense_Mutation p.A492T 0.15 deleterious(0) benign(0.441) TCGA-MX-A5UJ-01 16 4732885 4732885 G A MGRN1 Missense_Mutation p.V474M 0.24 deleterious_low_confidence(0.01) benign(0.128) TCGA-MX-A5UJ-01 16 4749170 4749170 G A ANKS3 Missense_Mutation p.A431V 0.08 deleterious(0.04) possibly_damaging(0.897) TCGA-MX-A5UJ-01 16 4810569 4810569 G A ZNF500 Silent p.D228D 0.26 TCGA-MX-A5UJ-01 16 4909908 4909908 A - UBN1 Frame_Shift_Del p.D206Mfs*38 0.24 TCGA-MX-A5UJ-01 16 49670997 49670997 G A ZNF423 Missense_Mutation p.S689L 0.33 deleterious(0) probably_damaging(0.935) TCGA-MX-A5UJ-01 16 50261813 50261813 C T PAPD5 Nonsense_Mutation p.R607* 0.16 TCGA-MX-A5UJ-01 16 50324513 50324513 C T ADCY7 Missense_Mutation p.A106V 0.16 tolerated(0.18) benign(0.002) TCGA-MX-A5UJ-01 16 52479908 52479908 G A TOX3 Nonsense_Mutation p.Q302* 0.15 TCGA-MX-A5UJ-01 16 53279640 53279640 G A CHD9 Missense_Mutation p.R1111Q 0.33 probably_damaging(0.999) TCGA-MX-A5UJ-01 16 56693139 56693139 T A MT1F 3'UTR 0.14 TCGA-MX-A5UJ-01 16 57159798 57159798 C T CPNE2 Silent p.N318N 0.15 TCGA-MX-A5UJ-01 16 57597822 57597822 C T GPR114 Silent p.D120D 0.22 TCGA-MX-A5UJ-01 16 57687167 57687167 A C GPR56 Missense_Mutation p.K180N 0.19 deleterious(0.04) possibly_damaging(0.638) TCGA-MX-A5UJ-01 16 57689372 57689372 C T GPR56 Missense_Mutation p.T277M 0.24 deleterious(0.01) possibly_damaging(0.535) TCGA-MX-A5UJ-01 16 58019819 58019819 T C TEPP Silent p.T280T 0.13 TCGA-MX-A5UJ-01 16 58538175 58538175 A G NDRG4 Missense_Mutation p.Q134R 0.21 tolerated(0.46) possibly_damaging(0.533) TCGA-MX-A5UJ-01 16 61851604 61851604 C T CDH8 Silent p.T352T 0.21 TCGA-MX-A5UJ-01 16 66436738 66436738 C T CDH5 Missense_Mutation p.P674L 0.18 tolerated(0.85) benign(0.045) TCGA-MX-A5UJ-01 16 66562958 66562958 G A TK2 Missense_Mutation p.R130W 0.26 deleterious(0) probably_damaging(0.999) TCGA-MX-A5UJ-01 16 66974419 66974419 G A CES2 Missense_Mutation p.A277T 0.20 deleterious(0.02) probably_damaging(0.93) TCGA-MX-A5UJ-01 16 67201666 67201666 G - HSF4 Frame_Shift_Del p.D302Mfs*17 0.27 TCGA-MX-A5UJ-01 16 67264360 67264360 C T FHOD1 Missense_Mutation p.E970K 0.17 deleterious(0.05) probably_damaging(0.95) TCGA-MX-A5UJ-01 16 67470245 67470245 G - HSD11B2 Frame_Shift_Del p.V255Sfs*16 0.19 TCGA-MX-A5UJ-01 16 67477041 67477041 G A ATP6V0D1 Silent p.D174D 0.26 TCGA-MX-A5UJ-01 16 67662368 67662368 C T CTCF Silent p.L538L 0.23 TCGA-MX-A5UJ-01 16 67909991 67909991 G A EDC4 Missense_Mutation p.E76K 0.15 tolerated(0.08) possibly_damaging(0.501) TCGA-MX-A5UJ-01 16 67978779 67978779 G A SLC12A4 Silent p.R1076R 0.15 TCGA-MX-A5UJ-01 16 69390715 69390715 A G TERF2 3'UTR 0.38 TCGA-MX-A5UJ-01 16 70721926 70721926 G A VAC14 Silent p.L752L 0.22 TCGA-MX-A5UJ-01 16 717484 717484 C T WDR90 Silent p.A1714A 0.25 TCGA-MX-A5UJ-01 16 72094353 72094353 T C HP Missense_Mutation p.V262A 0.20 deleterious(0.03) probably_damaging(0.932) TCGA-MX-A5UJ-01 16 72821630 72821630 G A ZFHX3 Silent p.G3515G 0.26 TCGA-MX-A5UJ-01 16 72984764 72984764 C T ZFHX3 Silent p.P940P 0.23 TCGA-MX-A5UJ-01 16 72992701 72992701 G A ZFHX3 Silent p.D448D 0.11 TCGA-MX-A5UJ-01 16 74657848 74657848 A G RFWD3 Missense_Mutation p.V768A 0.08 deleterious(0.01) possibly_damaging(0.9) TCGA-MX-A5UJ-01 16 75563882 75563882 G T CHST5 Missense_Mutation p.P134Q 0.17 deleterious(0.04) possibly_damaging(0.775) TCGA-MX-A5UJ-01 16 76556154 76556154 G A CNTNAP4 Missense_Mutation p.G846S 0.10 deleterious(0.01) probably_damaging(0.951) TCGA-MX-A5UJ-01 16 7703894 7703894 G A RBFOX1 Missense_Mutation p.V299M 0.27 deleterious(0.01) possibly_damaging(0.598) TCGA-MX-A5UJ-01 16 784095 784095 A C NARFL Intron 0.42 TCGA-MX-A5UJ-01 16 784278 784278 G - NARFL Frame_Shift_Del p.P215Rfs*19 0.21 TCGA-MX-A5UJ-01 16 784641 784641 C - NARFL Intron 0.25 TCGA-MX-A5UJ-01 16 80718448 80718448 C T CDYL2 Silent p.A201A 0.29 TCGA-MX-A5UJ-01 16 85688047 85688047 C T GSE1 Missense_Mutation p.P197L 0.09 deleterious(0.01) unknown(0) TCGA-MX-A5UJ-01 16 86612522 86612522 G A FOXL1 Missense_Mutation p.A65T 0.20 deleterious(0) probably_damaging(0.943) TCGA-MX-A5UJ-01 16 87760452 87760452 C T KLHDC4 Silent p.T226T 0.20 TCGA-MX-A5UJ-01 16 88599104 88599104 G T ZFPM1 Silent p.T343T 0.11 TCGA-MX-A5UJ-01 16 88675400 88675400 G A ZC3H18 Missense_Mutation p.G383R 0.30 deleterious_low_confidence(0) unknown(0) TCGA-MX-A5UJ-01 16 88744962 88744962 G A SNAI3 Missense_Mutation p.T258M 0.19 deleterious(0) probably_damaging(0.981) TCGA-MX-A5UJ-01 16 89764374 89764374 G - SPATA2L Frame_Shift_Del p.R215Efs*102 0.31 TCGA-MX-A5UJ-01 16 89925676 89925676 C T SPIRE2 Missense_Mutation p.S459L 0.22 tolerated(0.23) benign(0.002) TCGA-MX-A5UJ-01 17 11554544 11554544 T A DNAH9 Silent p.T752T 0.22 TCGA-MX-A5UJ-01 17 13503926 13503926 A G HS3ST3A1 Missense_Mutation p.V174A 0.18 deleterious(0.05) benign(0.152) TCGA-MX-A5UJ-01 17 1380799 1380799 G A MYO1C Missense_Mutation p.T525M 0.07 deleterious(0) probably_damaging(1) TCGA-MX-A5UJ-01 17 1540090 1540090 C T SCARF1 Missense_Mutation p.G516S 0.19 deleterious(0.01) probably_damaging(0.969) TCGA-MX-A5UJ-01 17 1542119 1542119 G - SCARF1 Frame_Shift_Del p.R449Dfs*18 0.18 TCGA-MX-A5UJ-01 17 17997175 17997175 G T DRG2 Missense_Mutation p.R38L 0.14 deleterious(0) probably_damaging(0.999) TCGA-MX-A5UJ-01 17 18024983 18024983 C - MYO15A Frame_Shift_Del p.P958Lfs*28 0.19 TCGA-MX-A5UJ-01 17 18138798 18138799 - G LLGL1 Frame_Shift_Ins p.R436Pfs*18 0.23 TCGA-MX-A5UJ-01 17 20911235 20911235 G A USP22 Missense_Mutation p.T393I 0.11 deleterious(0.03) possibly_damaging(0.764) TCGA-MX-A5UJ-01 17 20911258 20911258 A G USP22 Silent p.G385G 0.10 TCGA-MX-A5UJ-01 17 21319295 21319295 G A KCNJ12 Missense_Mutation p.R214H 0.17 deleterious(0) probably_damaging(0.997) TCGA-MX-A5UJ-01 17 2594033 2594033 C T CLUH Missense_Mutation p.R1262Q 0.12 tolerated(0.09) possibly_damaging(0.567) TCGA-MX-A5UJ-01 17 2601712 2601713 - C CLUH Frame_Shift_Ins p.D442Gfs*99 0.21 TCGA-MX-A5UJ-01 17 2604528 2604528 C T CLUH Missense_Mutation p.A273T 0.22 tolerated(0.06) benign(0.063) TCGA-MX-A5UJ-01 17 26732939 26732939 C - SLC46A1 Frame_Shift_Del p.G65Afs*25 0.18 TCGA-MX-A5UJ-01 17 26965391 26965391 A G KIAA0100 Missense_Mutation p.V464A 0.18 tolerated(0.76) benign(0.006) TCGA-MX-A5UJ-01 17 27060998 27060998 T - NEK8 Intron 0.27 TCGA-MX-A5UJ-01 17 27187465 27187465 C T ERAL1 Missense_Mutation p.P403L 0.22 tolerated(0.35) benign(0.004) TCGA-MX-A5UJ-01 17 27208830 27208830 A G FLOT2 Splice_Site p.X305_splice 0.16 TCGA-MX-A5UJ-01 17 27224559 27224559 C T FLOT2 Missense_Mutation p.A12T 0.19 deleterious(0) possibly_damaging(0.878) TCGA-MX-A5UJ-01 17 27938644 27938644 G - ANKRD13B Frame_Shift_Del p.G319Afs*7 0.15 TCGA-MX-A5UJ-01 17 27957960 27957960 C T SSH2 Missense_Mutation p.V1391M 0.22 deleterious_low_confidence(0.05) benign(0.063) TCGA-MX-A5UJ-01 17 29111392 29111392 G A CRLF3 Missense_Mutation p.T381M 0.21 deleterious(0) probably_damaging(0.998) TCGA-MX-A5UJ-01 17 29220775 29220776 - A ATAD5 Frame_Shift_Ins p.C1638Mfs*14 0.26 TCGA-MX-A5UJ-01 17 29261279 29261279 A G ADAP2 Silent p.A158A 0.15 TCGA-MX-A5UJ-01 17 29676229 29676229 C T NF1 Silent p.D2427D 0.14 TCGA-MX-A5UJ-01 17 3101283 3101283 C - OR1A2 Frame_Shift_Del p.H159Tfs*16 0.17 TCGA-MX-A5UJ-01 17 33428224 33428224 C T RAD51L3-RFFL Missense_Mutation p.R141Q 0.27 tolerated(0.11) benign(0.026) TCGA-MX-A5UJ-01 17 33460493 33460493 G A NLE1 Silent p.H413H 0.19 TCGA-MX-A5UJ-01 17 33689813 33689813 G A SLFN11 Silent p.Y338Y 0.18 TCGA-MX-A5UJ-01 17 3370829 3370829 C A SPATA22 Missense_Mutation p.L21F 0.32 deleterious(0) probably_damaging(0.999) TCGA-MX-A5UJ-01 17 34935830 34935830 C T GGNBP2 Missense_Mutation p.A334V 0.17 deleterious(0) possibly_damaging(0.796) TCGA-MX-A5UJ-01 17 34955380 34955381 TG - DHRS11 Frame_Shift_Del p.V162Dfs*5 0.19 TCGA-MX-A5UJ-01 17 35536292 35536292 G - ACACA Frame_Shift_Del p.P1663Lfs*7 0.13 TCGA-MX-A5UJ-01 17 3655042 3655042 C - ITGAE Frame_Shift_Del p.A599Pfs*84 0.15 TCGA-MX-A5UJ-01 17 3655165 3655165 C T ITGAE Missense_Mutation p.G558S 0.17 tolerated(0.12) benign(0.232) TCGA-MX-A5UJ-01 17 37264468 37264468 C A PLXDC1 Missense_Mutation p.R167L 0.23 deleterious(0) probably_damaging(0.96) TCGA-MX-A5UJ-01 17 37761906 37761906 G A NEUROD2 Missense_Mutation p.S316L 0.22 deleterious(0.01) possibly_damaging(0.694) TCGA-MX-A5UJ-01 17 37822279 37822279 C - TCAP Frame_Shift_Del p.P142Lfs*46 0.21 TCGA-MX-A5UJ-01 17 37868208 37868208 C A ERBB2 Missense_Mutation p.S310Y 0.20 deleterious(0) probably_damaging(0.996) TCGA-MX-A5UJ-01 17 37879583 37879583 C T ERBB2 Missense_Mutation p.S653F 0.20 tolerated(0.09) benign(0.007) TCGA-MX-A5UJ-01 17 38253569 38253569 C T NR1D1 Missense_Mutation p.S40N 0.32 deleterious(0.01) probably_damaging(0.968) TCGA-MX-A5UJ-01 17 3845918 3845919 - C ATP2A3 Frame_Shift_Ins p.S510Qfs*10 0.16 TCGA-MX-A5UJ-01 17 38926123 38926123 C T KRT26 Silent p.T284T 0.17 TCGA-MX-A5UJ-01 17 39340769 39340769 C T KRTAP4-1 Missense_Mutation p.R113H 0.22 tolerated(0.06) possibly_damaging(0.809) TCGA-MX-A5UJ-01 17 3967998 3967998 G A ZZEF1 Missense_Mutation p.R1459C 0.15 tolerated(0.14) benign(0.001) TCGA-MX-A5UJ-01 17 39766610 39766610 C T KRT16 Missense_Mutation p.R418H 0.07 tolerated(0.05) possibly_damaging(0.615) TCGA-MX-A5UJ-01 17 40174609 40174609 G A NKIRAS2 Missense_Mutation p.R96H 0.25 tolerated(0.54) probably_damaging(0.953) TCGA-MX-A5UJ-01 17 40274889 40274891 CTT - HSPB9 In_Frame_Del p.F8del 0.24 TCGA-MX-A5UJ-01 17 40716115 40716115 C - COASY Frame_Shift_Del p.S310Pfs*38 0.25 TCGA-MX-A5UJ-01 17 40766567 40766567 G A TUBG1 Silent p.P350P 0.12 TCGA-MX-A5UJ-01 17 4098291 4098291 C T ANKFY1 Missense_Mutation p.A494T 0.15 tolerated(0.1) probably_damaging(0.946) TCGA-MX-A5UJ-01 17 41832700 41832700 C T SOST 3'UTR 0.19 TCGA-MX-A5UJ-01 17 43922905 43922905 C A SPPL2C Missense_Mutation p.N211K 0.21 tolerated(1) benign(0.033) TCGA-MX-A5UJ-01 17 4436615 4436615 G A SPNS2 Missense_Mutation p.R389H 0.25 deleterious(0) probably_damaging(0.963) TCGA-MX-A5UJ-01 17 45788038 45788038 C - TBKBP1 3'UTR 0.16 TCGA-MX-A5UJ-01 17 46685449 46685449 G A HOXB7 Missense_Mutation p.R137C 0.23 deleterious(0) probably_damaging(0.973) TCGA-MX-A5UJ-01 17 4798734 4798734 C T MINK1 Missense_Mutation p.R1059C 0.24 deleterious(0) probably_damaging(0.999) TCGA-MX-A5UJ-01 17 4804122 4804122 G A CHRNE Missense_Mutation p.P295S 0.20 deleterious(0) probably_damaging(0.999) TCGA-MX-A5UJ-01 17 48433974 48433974 G A XYLT2 Missense_Mutation p.G529S 0.18 tolerated(0.11) benign(0.021) TCGA-MX-A5UJ-01 17 48445636 48445636 A G MRPL27 Silent p.C88C 0.23 TCGA-MX-A5UJ-01 17 48680219 48680219 C T CACNA1G Silent p.T1318T 0.19 TCGA-MX-A5UJ-01 17 4875738 4875738 G - CAMTA2 Frame_Shift_Del p.P889Lfs*9 0.38 TCGA-MX-A5UJ-01 17 4886137 4886137 C T CAMTA2 Missense_Mutation p.R108Q 0.19 deleterious(0) probably_damaging(0.999) TCGA-MX-A5UJ-01 17 4936377 4936377 A G SLC52A1 Silent p.L408L 0.07 TCGA-MX-A5UJ-01 17 54428180 54428181 - A ANKFN1 Frame_Shift_Ins p.H87Tfs*2 0.18 TCGA-MX-A5UJ-01 17 54990912 54990912 C T TRIM25 Silent p.Q146Q 0.13 TCGA-MX-A5UJ-01 17 56350265 56350266 - G MPO Frame_Shift_Ins p.I546Hfs*22 0.22 TCGA-MX-A5UJ-01 17 56387419 56387424 TCCTCT - BZRAP1 In_Frame_Del p.E1273_E1274del 0.17 TCGA-MX-A5UJ-01 17 56435974 56435974 T C RNF43 Missense_Mutation p.H388R 0.30 deleterious(0.01) benign(0.013) TCGA-MX-A5UJ-01 17 56437530 56437531 - G RNF43 Frame_Shift_Ins p.L311Pfs*132 0.16 TCGA-MX-A5UJ-01 17 57141756 57141756 G A TRIM37 Missense_Mutation p.P274S 0.36 deleterious(0) probably_damaging(1) TCGA-MX-A5UJ-01 17 57741235 57741235 G A CLTC Silent p.V467V 0.07 TCGA-MX-A5UJ-01 17 61497692 61497692 G A TANC2 Missense_Mutation p.R1450Q 0.21 tolerated_low_confidence(0.25) benign(0.072) TCGA-MX-A5UJ-01 17 61611575 61611575 G A KCNH6 Missense_Mutation p.R335H 0.26 tolerated(0.14) probably_damaging(0.953) TCGA-MX-A5UJ-01 17 61613087 61613087 G A KCNH6 Missense_Mutation p.A387T 0.05 deleterious(0) probably_damaging(0.934) TCGA-MX-A5UJ-01 17 62028988 62028988 G A SCN4A Silent p.P883P 0.28 TCGA-MX-A5UJ-01 17 62541847 62541855 AAAAAGGGG - SMURF2 3'UTR 0.50 TCGA-MX-A5UJ-01 17 6367116 6367116 C T PITPNM3 Missense_Mutation p.A748T 0.32 tolerated(0.61) possibly_damaging(0.572) TCGA-MX-A5UJ-01 17 64299019 64299019 C A PRKCA Missense_Mutation p.A17D 0.24 tolerated(0.49) benign(0.224) TCGA-MX-A5UJ-01 17 66511561 66511561 C T PRKAR1A Silent p.A7A 0.12 TCGA-MX-A5UJ-01 17 7129420 7129420 G A DVL2 Nonsense_Mutation p.R659* 0.16 TCGA-MX-A5UJ-01 17 72353756 72353756 G A BTBD17 Silent p.R159R 0.36 TCGA-MX-A5UJ-01 17 72436873 72436873 C T GPRC5C Missense_Mutation p.R365W 0.20 deleterious(0) probably_damaging(1) TCGA-MX-A5UJ-01 17 72846402 72846402 C T GRIN2C Silent p.V478V 0.17 TCGA-MX-A5UJ-01 17 72846864 72846864 C T GRIN2C Missense_Mutation p.V386M 0.19 deleterious(0) probably_damaging(0.932) TCGA-MX-A5UJ-01 17 72942794 72942794 G A OTOP3 Missense_Mutation p.A282T 0.24 tolerated(0.19) benign(0.01) TCGA-MX-A5UJ-01 17 73517590 73517590 C T TSEN54 Missense_Mutation p.R208W 0.14 tolerated(0.14) benign(0.004) TCGA-MX-A5UJ-01 17 73571064 73571064 G A LLGL2 3'UTR 0.16 TCGA-MX-A5UJ-01 17 7365428 7365428 G A ZBTB4 Missense_Mutation p.A958V 0.22 benign(0.001) TCGA-MX-A5UJ-01 17 73998463 73998463 C T CDK3 Silent p.R150R 0.25 TCGA-MX-A5UJ-01 17 7406728 7406728 C T POLR2A Missense_Mutation p.R985W 0.10 probably_damaging(1) TCGA-MX-A5UJ-01 17 75190832 75190832 C T SEC14L1 Missense_Mutation p.P183L 0.21 deleterious(0.01) benign(0.06) TCGA-MX-A5UJ-01 17 75205426 75205426 C T SEC14L1 Silent p.C493C 0.31 TCGA-MX-A5UJ-01 17 7611436 7611436 C - EFNB3 Frame_Shift_Del p.P96Lfs*62 0.25 TCGA-MX-A5UJ-01 17 7734796 7734796 C - DNAH2 Frame_Shift_Del p.L4185Sfs*15 0.16 TCGA-MX-A5UJ-01 17 7758925 7758925 C T TMEM88 Missense_Mutation p.P125S 0.19 deleterious(0) probably_damaging(0.932) TCGA-MX-A5UJ-01 17 77768618 77768618 C - CBX8 Frame_Shift_Del p.G329Efs*27 0.21 TCGA-MX-A5UJ-01 17 78093160 78093160 G T GAA 3'UTR 0.20 TCGA-MX-A5UJ-01 17 78320503 78320503 G A RNF213 Missense_Mutation p.A2790T 0.24 possibly_damaging(0.798) TCGA-MX-A5UJ-01 17 78796081 78796081 C T RPTOR Missense_Mutation p.A324V 0.23 deleterious(0) probably_damaging(0.975) TCGA-MX-A5UJ-01 17 78933973 78933973 C T RPTOR Silent p.R1191R 0.13 TCGA-MX-A5UJ-01 17 7910804 7910804 C T GUCY2D Silent p.D508D 0.15 TCGA-MX-A5UJ-01 17 79287421 79287421 A - TMEM105 3'UTR 0.22 TCGA-MX-A5UJ-01 17 79674255 79674255 C T MRPL12 Silent p.T194T 0.21 TCGA-MX-A5UJ-01 17 80011149 80011149 G - GPS1 Splice_Site p.X53_splice 0.28 TCGA-MX-A5UJ-01 17 80041188 80041188 G A FASN Missense_Mutation p.R1819W 0.18 deleterious(0.01) possibly_damaging(0.586) TCGA-MX-A5UJ-01 17 80046330 80046330 G A FASN Silent p.D843D 0.21 TCGA-MX-A5UJ-01 17 8161423 8161423 C T PFAS Silent p.D414D 0.20 TCGA-MX-A5UJ-01 17 8363392 8363392 T C NDEL1 Silent p.Y286Y 0.19 TCGA-MX-A5UJ-01 17 8700711 8700711 A G MFSD6L Silent p.L576L 0.22 TCGA-MX-A5UJ-01 18 11884550 11884550 C T MPPE1 Missense_Mutation p.C362Y 0.29 deleterious(0.02) possibly_damaging(0.578) TCGA-MX-A5UJ-01 18 13885109 13885109 G A MC2R Missense_Mutation p.R137W 0.18 deleterious(0) possibly_damaging(0.498) TCGA-MX-A5UJ-01 18 19751534 19751534 G T GATA6 Missense_Mutation p.Q143H 0.21 tolerated_low_confidence(0.08) benign(0.005) TCGA-MX-A5UJ-01 18 21111681 21111681 T - NPC1 3'UTR 0.13 TCGA-MX-A5UJ-01 18 21399888 21399888 T C LAMA3 Missense_Mutation p.L744P 0.25 possibly_damaging(0.786) TCGA-MX-A5UJ-01 18 21819205 21819205 C T OSBPL1A Missense_Mutation p.E475K 0.24 deleterious(0.02) benign(0.356) TCGA-MX-A5UJ-01 18 22057510 22057510 G A HRH4 Missense_Mutation p.R386Q 0.28 tolerated(0.38) benign(0.011) TCGA-MX-A5UJ-01 18 22807259 22807259 C T ZNF521 Missense_Mutation p.R208H 0.22 tolerated(0.16) probably_damaging(0.983) TCGA-MX-A5UJ-01 18 23713975 23713975 G A PSMA8 Missense_Mutation p.G16R 0.22 deleterious(0.01) probably_damaging(0.957) TCGA-MX-A5UJ-01 18 29116384 29116384 G A DSG2 Missense_Mutation p.R548H 0.21 tolerated(0.85) benign(0.001) TCGA-MX-A5UJ-01 18 29205478 29205478 A G B4GALT6 3'UTR 0.28 TCGA-MX-A5UJ-01 18 2945796 2945796 T - LPIN2 Intron 0.15 TCGA-MX-A5UJ-01 18 31325875 31325875 G A ASXL3 Silent p.P2021P 0.46 TCGA-MX-A5UJ-01 18 46343596 46343596 A T CTIF Missense_Mutation p.D461V 0.17 deleterious(0.03) benign(0.055) TCGA-MX-A5UJ-01 18 5489081 5489081 C T EPB41L3 Silent p.P34P 0.28 TCGA-MX-A5UJ-01 18 55019998 55019998 C T ST8SIA3 5'UTR 0.36 TCGA-MX-A5UJ-01 18 55238817 55238817 G A FECH Intron 0.09 TCGA-MX-A5UJ-01 18 56939676 56939676 C T RAX Missense_Mutation p.A154T 0.21 deleterious(0) probably_damaging(1) TCGA-MX-A5UJ-01 18 63511084 63511084 C T CDH7 Missense_Mutation p.R340W 0.31 deleterious(0) probably_damaging(0.978) TCGA-MX-A5UJ-01 18 67992095 67992096 - A SOCS6 Frame_Shift_Ins p.N66Kfs*49 0.15 TCGA-MX-A5UJ-01 18 7008509 7008509 C T LAMA1 Missense_Mutation p.G1367D 0.18 deleterious(0) probably_damaging(0.98) TCGA-MX-A5UJ-01 18 7231997 7231997 C G LRRC30 Silent p.G287G 0.17 TCGA-MX-A5UJ-01 18 745962 745963 CT - YES1 Frame_Shift_Del p.S187* 0.26 TCGA-MX-A5UJ-01 18 9122625 9122625 C T NDUFV2 Missense_Mutation p.P139S 0.09 deleterious(0.01) probably_damaging(1) TCGA-MX-A5UJ-01 19 10404559 10404559 C T ICAM5 Missense_Mutation p.R551C 0.18 deleterious(0.05) probably_damaging(0.912) TCGA-MX-A5UJ-01 19 10405144 10405144 C T ICAM5 Silent p.S686S 0.22 TCGA-MX-A5UJ-01 19 10624502 10624502 C T S1PR5 Missense_Mutation p.A396T 0.24 tolerated_low_confidence(0.36) benign(0.002) TCGA-MX-A5UJ-01 19 11031171 11031171 G A CARM1 Missense_Mutation p.R419Q 0.24 deleterious(0.01) probably_damaging(0.994) TCGA-MX-A5UJ-01 19 11537597 11537597 C T CCDC151 Missense_Mutation p.R207Q 0.15 deleterious(0) probably_damaging(0.998) TCGA-MX-A5UJ-01 19 12298591 12298591 T C ZNF136 Silent p.H466H 0.14 TCGA-MX-A5UJ-01 19 1235563 1235563 C T C19orf26 Missense_Mutation p.A83T 0.17 deleterious(0.04) benign(0.133) TCGA-MX-A5UJ-01 19 1278831 1278831 G T C19orf24 3'UTR 0.14 TCGA-MX-A5UJ-01 19 13189499 13189499 G A NFIX Missense_Mutation p.R343H 0.27 deleterious(0.02) benign(0.021) TCGA-MX-A5UJ-01 19 13366055 13366055 C T CACNA1A Missense_Mutation p.A1537T 0.17 benign(0.038) TCGA-MX-A5UJ-01 19 13446716 13446716 T C CACNA1A Missense_Mutation p.D329G 0.21 possibly_damaging(0.908) TCGA-MX-A5UJ-01 19 14000018 14000018 C T C19orf57 Missense_Mutation p.E551K 0.20 deleterious(0.03) possibly_damaging(0.81) TCGA-MX-A5UJ-01 19 14263660 14263660 C - LPHN1 Frame_Shift_Del p.G1125Afs*33 0.24 TCGA-MX-A5UJ-01 19 14273896 14273896 G A LPHN1 Silent p.S244S 0.24 TCGA-MX-A5UJ-01 19 1465768 1465768 G A APC2 Missense_Mutation p.R823H 0.36 benign(0.033) TCGA-MX-A5UJ-01 19 14758015 14758015 G A EMR3 Missense_Mutation p.T287M 0.21 tolerated(0.06) benign(0.051) TCGA-MX-A5UJ-01 19 15353815 15353815 G A BRD4 Missense_Mutation p.P1022L 0.42 possibly_damaging(0.726) TCGA-MX-A5UJ-01 19 1556571 1556571 G A MEX3D Missense_Mutation p.P316L 0.21 deleterious(0) probably_damaging(0.999) TCGA-MX-A5UJ-01 19 15648369 15648369 G T CYP4F22 Missense_Mutation p.G149C 0.20 deleterious(0) probably_damaging(1) TCGA-MX-A5UJ-01 19 16980344 16980344 G A SIN3B Missense_Mutation p.R659Q 0.17 tolerated(0.05) benign(0.012) TCGA-MX-A5UJ-01 19 17308625 17308625 G A MYO9B Silent p.T1357T 0.15 TCGA-MX-A5UJ-01 19 17375099 17375099 G A USHBP1 Missense_Mutation p.R4W 0.20 tolerated(0.06) unknown(0) TCGA-MX-A5UJ-01 19 17411760 17411760 G A ABHD8 Silent p.A222A 0.28 TCGA-MX-A5UJ-01 19 17441961 17441961 G A ANO8 Missense_Mutation p.T256M 0.10 deleterious(0) probably_damaging(1) TCGA-MX-A5UJ-01 19 17571525 17571525 G C NXNL1 Missense_Mutation p.P52A 0.19 deleterious(0.02) probably_damaging(0.934) TCGA-MX-A5UJ-01 19 17678316 17678316 G A COLGALT1 Silent p.A197A 0.27 TCGA-MX-A5UJ-01 19 17752341 17752341 C T UNC13A Missense_Mutation p.V833M 0.18 deleterious(0.04) benign(0.006) TCGA-MX-A5UJ-01 19 17836789 17836789 C T MAP1S Missense_Mutation p.A199V 0.21 tolerated(0.44) benign(0.004) TCGA-MX-A5UJ-01 19 18245637 18245637 C T MAST3 Missense_Mutation p.T543M 0.14 deleterious(0) probably_damaging(0.999) TCGA-MX-A5UJ-01 19 18249842 18249842 C T MAST3 Missense_Mutation p.R676C 0.42 tolerated(0.15) benign(0.001) TCGA-MX-A5UJ-01 19 18507561 18507561 G A LRRC25 Silent p.N71N 0.33 TCGA-MX-A5UJ-01 19 18545051 18545051 G A SSBP4 Missense_Mutation p.V385M 0.24 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-MX-A5UJ-01 19 19032503 19032503 C T DDX49 Missense_Mutation p.R91W 0.20 deleterious(0.01) probably_damaging(0.99) TCGA-MX-A5UJ-01 19 19168422 19168422 C T ARMC6 Silent p.G497G 0.20 TCGA-MX-A5UJ-01 19 19337661 19337661 G - NCAN Frame_Shift_Del p.R482Afs*5 0.12 TCGA-MX-A5UJ-01 19 19387471 19387471 G A SUGP1 Missense_Mutation p.R642W 0.19 deleterious(0.02) unknown(0) TCGA-MX-A5UJ-01 19 19606876 19606876 A G GATAD2A Missense_Mutation p.R258G 0.19 deleterious(0.01) probably_damaging(0.985) TCGA-MX-A5UJ-01 19 19625931 19625931 C T TSSK6 Silent p.Q102Q 0.22 TCGA-MX-A5UJ-01 19 19906351 19906351 T - ZNF506 Frame_Shift_Del p.G116Afs*5 0.21 TCGA-MX-A5UJ-01 19 1997459 1997459 G A BTBD2 Silent p.F137F 0.18 TCGA-MX-A5UJ-01 19 20117672 20117672 G A ZNF682 Silent p.F213F 0.17 TCGA-MX-A5UJ-01 19 20228702 20228702 A - ZNF90 Frame_Shift_Del p.G116Vfs*22 0.29 TCGA-MX-A5UJ-01 19 21266793 21266793 A G ZNF714 5'UTR 0.16 TCGA-MX-A5UJ-01 19 21365724 21365725 - A ZNF431 Frame_Shift_Ins p.C209Mfs*15 0.17 TCGA-MX-A5UJ-01 19 21606889 21606889 T C ZNF493 Silent p.L476L 0.10 TCGA-MX-A5UJ-01 19 2216631 2216631 C T DOT1L Missense_Mutation p.R759C 0.17 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-MX-A5UJ-01 19 22784189 22784189 A C AC011467.1 5'Flank 0.24 TCGA-MX-A5UJ-01 19 23844986 23844986 C T ZNF675 Silent p.L52L 0.21 TCGA-MX-A5UJ-01 19 31039609 31039609 C T ZNF536 Missense_Mutation p.A1028V 0.26 deleterious(0) benign(0.12) TCGA-MX-A5UJ-01 19 33892708 33892708 C T PEPD Missense_Mutation p.G296S 0.23 deleterious(0) probably_damaging(0.999) TCGA-MX-A5UJ-01 19 35842806 35842806 C T FFAR1 Missense_Mutation p.R118W 0.19 deleterious(0) benign(0.212) TCGA-MX-A5UJ-01 19 3600153 3600153 C T TBXA2R Silent p.A160A 0.21 TCGA-MX-A5UJ-01 19 36357143 36357143 C T KIRREL2 Missense_Mutation p.P626S 0.24 tolerated(0.17) benign(0.079) TCGA-MX-A5UJ-01 19 36430697 36430697 G A LRFN3 Missense_Mutation p.E124K 0.11 tolerated(0.6) benign(0.227) TCGA-MX-A5UJ-01 19 36430710 36430710 G A LRFN3 Missense_Mutation p.R128H 0.15 deleterious(0.03) possibly_damaging(0.479) TCGA-MX-A5UJ-01 19 3750145 3750145 C T TJP3 Missense_Mutation p.R883C 0.19 deleterious(0.04) benign(0.003) TCGA-MX-A5UJ-01 19 37642737 37642737 T C ZNF585A Silent p.K633K 0.19 TCGA-MX-A5UJ-01 19 3778367 3778367 G - MATK Frame_Shift_Del p.E448Rfs*11 0.18 TCGA-MX-A5UJ-01 19 38102620 38102620 A - ZNF540 Frame_Shift_Del p.M149Cfs*12 0.25 TCGA-MX-A5UJ-01 19 38610300 38610300 G - SIPA1L3 Frame_Shift_Del p.V884Wfs*65 0.12 TCGA-MX-A5UJ-01 19 38817501 38817501 G T KCNK6 Missense_Mutation p.E197D 0.26 tolerated(0.57) benign(0.063) TCGA-MX-A5UJ-01 19 38817914 38817915 - C KCNK6 Frame_Shift_Ins p.P274Sfs*10 0.12 TCGA-MX-A5UJ-01 19 38876168 38876168 G A GGN Silent p.R578R 0.21 TCGA-MX-A5UJ-01 19 38964152 38964152 C T RYR1 Missense_Mutation p.R1301C 0.16 benign(0.034) TCGA-MX-A5UJ-01 19 39214320 39214320 C T ACTN4 Silent p.D503D 0.27 TCGA-MX-A5UJ-01 19 3959300 3959300 G A DAPK3 Silent p.T388T 0.15 TCGA-MX-A5UJ-01 19 39597645 39597645 G A PAPL Missense_Mutation p.R391H 0.26 tolerated(0.24) benign(0.42) TCGA-MX-A5UJ-01 19 3977591 3977593 CTC - EEF2 In_Frame_Del p.E695del 0.27 TCGA-MX-A5UJ-01 19 39997957 39997957 G A DLL3 Missense_Mutation p.G458S 0.29 deleterious(0.01) probably_damaging(1) TCGA-MX-A5UJ-01 19 41704642 41704642 G A CYP2S1 Missense_Mutation p.R228Q 0.22 tolerated(0.45) benign(0.011) TCGA-MX-A5UJ-01 19 41889793 41889793 C A TMEM91 3'UTR 0.41 TCGA-MX-A5UJ-01 19 42219621 42219621 G A CEACAM5 Silent p.G252G 0.23 TCGA-MX-A5UJ-01 19 42315280 42315280 C T CEACAM3 3'UTR 0.25 TCGA-MX-A5UJ-01 19 42703739 42703739 C T DEDD2 Missense_Mutation p.V278M 0.20 deleterious(0) possibly_damaging(0.868) TCGA-MX-A5UJ-01 19 43236967 43236967 G A PSG3 Silent p.S226S 0.10 TCGA-MX-A5UJ-01 19 434721 434721 C T SHC2 Silent p.T366T 0.16 TCGA-MX-A5UJ-01 19 4364212 4364212 G A SH3GL1 Missense_Mutation p.A113V 0.07 deleterious(0.02) probably_damaging(0.994) TCGA-MX-A5UJ-01 19 44636736 44636736 T C ZNF225 Missense_Mutation p.C657R 0.19 deleterious(0.01) possibly_damaging(0.621) TCGA-MX-A5UJ-01 19 4525740 4525740 G A PLIN5 Missense_Mutation p.R209C 0.28 deleterious(0) probably_damaging(0.976) TCGA-MX-A5UJ-01 19 45666382 45666382 G A TRAPPC6A 3'UTR 0.31 TCGA-MX-A5UJ-01 19 46215695 46215695 C T FBXO46 Silent p.P353P 0.23 TCGA-MX-A5UJ-01 19 46289148 46289148 C - DMWD Frame_Shift_Del p.A536Qfs*123 0.18 TCGA-MX-A5UJ-01 19 46289465 46289465 C T DMWD Missense_Mutation p.R430H 0.14 deleterious(0) probably_damaging(0.954) TCGA-MX-A5UJ-01 19 46355587 46355587 G C SYMPK Silent p.G94G 0.27 TCGA-MX-A5UJ-01 19 4651947 4651947 G A TNFAIP8L1 Silent p.A22A 0.17 TCGA-MX-A5UJ-01 19 4652233 4652233 G A TNFAIP8L1 Missense_Mutation p.A118T 0.33 tolerated(0.41) benign(0.007) TCGA-MX-A5UJ-01 19 4659964 4659964 A T C19orf10 Missense_Mutation p.F141I 0.22 deleterious(0) probably_damaging(0.998) TCGA-MX-A5UJ-01 19 47124649 47124649 G A PTGIR Missense_Mutation p.S350L 0.15 deleterious_low_confidence(0) benign(0.122) TCGA-MX-A5UJ-01 19 47858312 47858312 G A DHX34 Missense_Mutation p.R241H 0.25 deleterious(0) probably_damaging(0.997) TCGA-MX-A5UJ-01 19 47861245 47861247 CCT - DHX34 In_Frame_Del p.L382del 0.16 TCGA-MX-A5UJ-01 19 47883016 47883016 G A DHX34 Missense_Mutation p.R919H 0.21 deleterious(0.01) probably_damaging(0.957) TCGA-MX-A5UJ-01 19 48244287 48244287 G - EHD2 Frame_Shift_Del p.G412Afs*35 0.11 TCGA-MX-A5UJ-01 19 48386832 48386832 A G SULT2A1 Splice_Site p.X115_splice 0.18 TCGA-MX-A5UJ-01 19 48789111 48789111 C T ZNF114 Missense_Mutation p.T77M 0.27 tolerated(0.05) benign(0.046) TCGA-MX-A5UJ-01 19 48965355 48965355 C T KCNJ14 Missense_Mutation p.A125V 0.18 tolerated(0.19) benign(0.34) TCGA-MX-A5UJ-01 19 49107079 49107079 G A FAM83E Missense_Mutation p.T283M 0.18 tolerated(0.09) possibly_damaging(0.758) TCGA-MX-A5UJ-01 19 49686364 49686364 G A TRPM4 Silent p.S546S 0.24 TCGA-MX-A5UJ-01 19 50200614 50200615 - C CPT1C Frame_Shift_Ins p.L60Pfs*34 0.22 TCGA-MX-A5UJ-01 19 50308757 50308757 G A AP2A1 Missense_Mutation p.A820T 0.55 tolerated(0.43) possibly_damaging(0.884) TCGA-MX-A5UJ-01 19 50333113 50333113 C - MED25 Frame_Shift_Del p.P201Rfs*13 0.35 TCGA-MX-A5UJ-01 19 50753885 50753885 C T MYH14 Silent p.F590F 0.14 TCGA-MX-A5UJ-01 19 50780037 50780037 C T MYH14 Missense_Mutation p.T1235M 0.14 deleterious(0.02) benign(0.063) TCGA-MX-A5UJ-01 19 50961915 50961915 G A MYBPC2 Missense_Mutation p.G804R 0.28 deleterious(0.02) probably_damaging(0.997) TCGA-MX-A5UJ-01 19 50979605 50979605 G - FAM71E1 Frame_Shift_Del p.P14Lfs*17 0.13 TCGA-MX-A5UJ-01 19 50985188 50985188 C A EMC10 Intron 0.19 TCGA-MX-A5UJ-01 19 51128721 51128721 C T SYT3 Silent p.A501A 0.44 TCGA-MX-A5UJ-01 19 5143999 5143999 C T KDM4B Missense_Mutation p.R858W 0.15 probably_damaging(0.965) TCGA-MX-A5UJ-01 19 51767298 51767298 G A SIGLECL1 5'UTR 0.13 TCGA-MX-A5UJ-01 19 51857746 51857746 A G ETFB Silent p.G49G 0.12 TCGA-MX-A5UJ-01 19 52003234 52003234 C T SIGLEC12 Missense_Mutation p.V250M 0.14 tolerated(0.19) benign(0.152) TCGA-MX-A5UJ-01 19 52147171 52147171 T - SIGLEC14 Frame_Shift_Del p.A292Pfs*18 0.33 TCGA-MX-A5UJ-01 19 5246039 5246039 G A PTPRS Missense_Mutation p.R246C 0.45 deleterious(0) possibly_damaging(0.907) TCGA-MX-A5UJ-01 19 52519392 52519392 C T ZNF614 Missense_Mutation p.E487K 0.18 deleterious(0.02) probably_damaging(0.95) TCGA-MX-A5UJ-01 19 52618100 52618100 T C ZNF616 Missense_Mutation p.T773A 0.20 tolerated_low_confidence(0.25) benign(0.006) TCGA-MX-A5UJ-01 19 52618714 52618714 C T ZNF616 Missense_Mutation p.R568Q 0.25 tolerated(1) benign(0.003) TCGA-MX-A5UJ-01 19 53431849 53431849 A C ZNF321P 3'UTR 0.20 TCGA-MX-A5UJ-01 19 53577421 53577421 C T ZNF160 Silent p.T81T 0.25 TCGA-MX-A5UJ-01 19 53958524 53958524 C T ZNF761 RNA 0.20 TCGA-MX-A5UJ-01 19 54299266 54299266 A G NLRP12 Missense_Mutation p.L982P 0.13 deleterious(0) unknown(0) TCGA-MX-A5UJ-01 19 54844948 54844948 A G LILRA4 Silent p.F465F 0.27 TCGA-MX-A5UJ-01 19 54849873 54849873 T C LILRA4 Missense_Mutation p.Q50R 0.22 tolerated(0.07) benign(0.196) TCGA-MX-A5UJ-01 19 54973146 54973146 G T LENG8 3'UTR 0.32 TCGA-MX-A5UJ-01 19 55147949 55147949 G T LILRB1 Missense_Mutation p.S553I 0.19 deleterious(0.01) possibly_damaging(0.465) TCGA-MX-A5UJ-01 19 55560098 55560098 G A RDH13 Missense_Mutation p.A125V 0.25 deleterious(0) probably_damaging(1) TCGA-MX-A5UJ-01 19 55853392 55853392 C T SUV420H2 Missense_Mutation p.R30C 0.24 deleterious(0.02) benign(0.229) TCGA-MX-A5UJ-01 19 55912953 55912953 C A UBE2S Missense_Mutation p.G174C 0.22 deleterious(0.04) benign(0.161) TCGA-MX-A5UJ-01 19 56196848 56196848 G A EPN1 Silent p.T216T 0.14 TCGA-MX-A5UJ-01 19 56197004 56197004 C T EPN1 Silent p.T268T 0.20 TCGA-MX-A5UJ-01 19 56243921 56243921 C T NLRP9 Missense_Mutation p.V426M 0.24 tolerated(0.11) benign(0.046) TCGA-MX-A5UJ-01 19 58131654 58131654 G A ZNF134 Missense_Mutation p.G56D 0.19 tolerated(0.18) benign(0.012) TCGA-MX-A5UJ-01 19 58384744 58384744 T C ZNF814 Missense_Mutation p.K672E 0.18 tolerated(0.18) probably_damaging(0.943) TCGA-MX-A5UJ-01 19 58490395 58490395 G A ZNF606 Silent p.D551D 0.07 TCGA-MX-A5UJ-01 19 58639337 58639337 G A ZNF329 Missense_Mutation p.R512W 0.06 deleterious(0) possibly_damaging(0.606) TCGA-MX-A5UJ-01 19 58967726 58967726 G A ZNF324B Missense_Mutation p.R472Q 0.14 tolerated(1) possibly_damaging(0.526) TCGA-MX-A5UJ-01 19 59012770 59012770 G T SLC27A5 Silent p.T355T 0.28 TCGA-MX-A5UJ-01 19 5978130 5978130 G A RANBP3 5'UTR 0.08 TCGA-MX-A5UJ-01 19 6422394 6422394 A G KHSRP Silent p.P101P 0.17 TCGA-MX-A5UJ-01 19 6495673 6495673 C T TUBB4A Silent p.Q279Q 0.12 TCGA-MX-A5UJ-01 19 6751164 6751164 G A TRIP10 Missense_Mutation p.R527Q 0.20 deleterious(0) probably_damaging(0.973) TCGA-MX-A5UJ-01 19 681484 681486 CTC - FSTL3 In_Frame_Del p.S221del 0.14 TCGA-MX-A5UJ-01 19 6832176 6832178 GAA - VAV1 In_Frame_Del p.K494del 0.18 TCGA-MX-A5UJ-01 19 7676008 7676008 G A CAMSAP3 Silent p.P386P 0.23 TCGA-MX-A5UJ-01 19 7682929 7682929 G A CAMSAP3 Missense_Mutation p.G1273S 0.21 tolerated(0.6) unknown(0) TCGA-MX-A5UJ-01 19 7690850 7690850 C A XAB2 Silent p.G246G 0.12 TCGA-MX-A5UJ-01 19 7734777 7734777 C - RETN Frame_Shift_Del p.R65Efs*70 0.08 TCGA-MX-A5UJ-01 19 7747586 7747586 G A TRAPPC5 Silent p.A149A 0.15 TCGA-MX-A5UJ-01 19 7794352 7794352 C T CLEC4G Missense_Mutation p.R261H 0.25 tolerated(0.17) benign(0.064) TCGA-MX-A5UJ-01 19 7797018 7797018 G T CLEC4G 5'UTR 0.19 TCGA-MX-A5UJ-01 19 7976205 7976205 G A MAP2K7 Missense_Mutation p.G309D 0.20 deleterious(0) probably_damaging(0.973) TCGA-MX-A5UJ-01 19 804376 804376 C T PTBP1 Missense_Mutation p.P125S 0.13 deleterious(0.04) possibly_damaging(0.626) TCGA-MX-A5UJ-01 19 828314 828314 G A AZU1 Missense_Mutation p.G48D 0.14 deleterious(0) probably_damaging(0.999) TCGA-MX-A5UJ-01 19 8398020 8398020 C T KANK3 Missense_Mutation p.R605K 0.25 tolerated(0.17) benign(0.14) TCGA-MX-A5UJ-01 19 9049778 9049778 A - MUC16 Frame_Shift_Del p.F10618Sfs*5 0.17 TCGA-MX-A5UJ-01 19 9064310 9064310 G - MUC16 Frame_Shift_Del p.S7713Lfs*5 0.15 TCGA-MX-A5UJ-01 19 9083008 9083008 T - MUC16 Frame_Shift_Del p.N2936Tfs*6 0.19 TCGA-MX-A5UJ-01 19 9226033 9226033 A G OR7G1 Missense_Mutation p.M136T 0.06 deleterious(0) benign(0.298) TCGA-MX-A5UJ-01 19 9639674 9639674 C T ZNF426 Silent p.S349S 0.17 TCGA-MX-A5UJ-01 19 9967586 9967586 C T OLFM2 Missense_Mutation p.C195Y 0.25 deleterious(0) possibly_damaging(0.542) TCGA-MX-A5UJ-01 1 100483314 100483314 C T SLC35A3 Missense_Mutation p.S277L 0.26 deleterious(0) probably_damaging(0.943) TCGA-MX-A5UJ-01 1 100553700 100553700 C A SASS6 Missense_Mutation p.K589N 0.26 deleterious(0.01) possibly_damaging(0.726) TCGA-MX-A5UJ-01 1 109366085 109366085 A G AKNAD1 Missense_Mutation p.Y692H 0.28 deleterious(0.05) benign(0.014) TCGA-MX-A5UJ-01 1 109560141 109560141 T - WDR47 Frame_Shift_Del p.R81Gfs*7 0.19 TCGA-MX-A5UJ-01 1 110170482 110170482 C T AMPD2 Missense_Mutation p.A400V 0.21 tolerated(0.14) probably_damaging(0.995) TCGA-MX-A5UJ-01 1 110613030 110613030 C T ALX3 Missense_Mutation p.A69T 0.27 tolerated_low_confidence(0.07) benign(0.08) TCGA-MX-A5UJ-01 1 110754666 110754666 G A KCNC4 Missense_Mutation p.R182Q 0.33 tolerated(0.52) benign(0.004) TCGA-MX-A5UJ-01 1 11254542 11254542 G A ANGPTL7 Missense_Mutation p.A233T 0.21 deleterious(0) probably_damaging(0.999) TCGA-MX-A5UJ-01 1 11273588 11273588 C T MTOR Silent p.T1051T 0.20 TCGA-MX-A5UJ-01 1 113058861 113058861 G A WNT2B Missense_Mutation p.C168Y 0.25 deleterious(0) probably_damaging(1) TCGA-MX-A5UJ-01 1 114201872 114201872 G A MAGI3 Missense_Mutation p.V934I 0.25 tolerated(0.71) probably_damaging(0.999) TCGA-MX-A5UJ-01 1 11561862 11561862 G A PTCHD2 Silent p.A271A 0.11 TCGA-MX-A5UJ-01 1 117119922 117119922 G A IGSF3 3'UTR 0.15 TCGA-MX-A5UJ-01 1 12030750 12030750 C T PLOD1 Silent p.Y593Y 0.24 TCGA-MX-A5UJ-01 1 12337120 12337120 A G VPS13D Missense_Mutation p.T1159A 0.09 possibly_damaging(0.591) TCGA-MX-A5UJ-01 1 12405431 12405432 AC - VPS13D Frame_Shift_Del p.T2964Pfs*2 0.22 TCGA-MX-A5UJ-01 1 12907980 12907980 C T HNRNPCL1 Missense_Mutation p.V55I 0.06 tolerated(0.1) benign(0.199) TCGA-MX-A5UJ-01 1 150300846 150300846 G A PRPF3 Missense_Mutation p.R115H 0.20 deleterious(0.04) benign(0.002) TCGA-MX-A5UJ-01 1 151315454 151315454 G - RFX5 Frame_Shift_Del p.R354Gfs*7 0.09 TCGA-MX-A5UJ-01 1 151381286 151381286 A G POGZ Missense_Mutation p.C649R 0.21 deleterious(0) probably_damaging(0.998) TCGA-MX-A5UJ-01 1 152277475 152277475 G T FLG Nonsense_Mutation p.S3296* 0.19 TCGA-MX-A5UJ-01 1 152283655 152283655 C T FLG Missense_Mutation p.R1236H 0.21 possibly_damaging(0.812) TCGA-MX-A5UJ-01 1 152284761 152284761 T C FLG Silent p.S867S 0.07 TCGA-MX-A5UJ-01 1 152286128 152286128 G A FLG Missense_Mutation p.R412C 0.08 probably_damaging(0.976) TCGA-MX-A5UJ-01 1 153923904 153923904 G A CRTC2 Silent p.G412G 0.19 TCGA-MX-A5UJ-01 1 154042916 154042916 G A NUP210L Missense_Mutation p.T796I 0.23 deleterious(0.03) possibly_damaging(0.461) TCGA-MX-A5UJ-01 1 154560661 154560661 G A ADAR Missense_Mutation p.R987C 0.24 deleterious(0.02) possibly_damaging(0.849) TCGA-MX-A5UJ-01 1 154950476 154950476 C T CKS1B Missense_Mutation p.P25S 0.18 deleterious(0.02) possibly_damaging(0.887) TCGA-MX-A5UJ-01 1 155041454 155041454 C T EFNA4 Intron 0.31 TCGA-MX-A5UJ-01 1 155209725 155209725 G A GBA Missense_Mutation p.R87W 0.18 deleterious(0.01) probably_damaging(0.992) TCGA-MX-A5UJ-01 1 155264509 155264509 G A PKLR Silent p.G243G 0.26 TCGA-MX-A5UJ-01 1 155291869 155291869 G C RUSC1 Missense_Mutation p.C102S 0.21 tolerated_low_confidence(0.13) probably_damaging(0.996) TCGA-MX-A5UJ-01 1 155450418 155450418 C T ASH1L Missense_Mutation p.S748N 0.20 tolerated_low_confidence(0.08) possibly_damaging(0.574) TCGA-MX-A5UJ-01 1 155451725 155451725 A C ASH1L Silent p.T312T 0.26 TCGA-MX-A5UJ-01 1 155658010 155658012 GAG - YY1AP1 In_Frame_Del p.L82del 0.18 TCGA-MX-A5UJ-01 1 1560249 1560249 G A MIB2 Missense_Mutation p.R280Q 0.21 deleterious(0) possibly_damaging(0.864) TCGA-MX-A5UJ-01 1 156105681 156105681 C - LMNA Intron 0.11 TCGA-MX-A5UJ-01 1 156626136 156626136 C T BCAN Missense_Mutation p.R669C 0.04 deleterious(0.01) probably_damaging(0.965) TCGA-MX-A5UJ-01 1 156708136 156708136 G A MRPL24 Missense_Mutation p.T93I 0.21 tolerated(0.47) possibly_damaging(0.558) TCGA-MX-A5UJ-01 1 157805863 157805863 G A CD5L Silent p.G46G 0.20 TCGA-MX-A5UJ-01 1 158047862 158047862 A G KIRREL Missense_Mutation p.D95G 0.22 deleterious(0) benign(0.349) TCGA-MX-A5UJ-01 1 158153810 158153810 G A CD1D Missense_Mutation p.R324Q 0.24 tolerated(0.09) benign(0.058) TCGA-MX-A5UJ-01 1 158637647 158637647 C T SPTA1 Splice_Site p.X680_splice 0.12 TCGA-MX-A5UJ-01 1 159683406 159683406 C T CRP Missense_Mutation p.G195D 0.17 tolerated(0.2) possibly_damaging(0.475) TCGA-MX-A5UJ-01 1 160156153 160156153 G A ATP1A4 Silent p.P1019P 0.23 TCGA-MX-A5UJ-01 1 16095094 16095094 G A FBLIM1 Silent p.P170P 0.09 TCGA-MX-A5UJ-01 1 16458672 16458672 G T EPHA2 Missense_Mutation p.R738S 0.08 deleterious(0) probably_damaging(1) TCGA-MX-A5UJ-01 1 165865547 165865547 G A UCK2 Silent p.A159A 0.14 TCGA-MX-A5UJ-01 1 166826737 166826737 C T TADA1 3'UTR 0.18 TCGA-MX-A5UJ-01 1 167815237 167815237 G A ADCY10 Missense_Mutation p.P901L 0.21 tolerated(0.07) benign(0.039) TCGA-MX-A5UJ-01 1 168169164 168169164 G A TIPRL Silent p.T233T 0.21 TCGA-MX-A5UJ-01 1 169438066 169438067 - A SLC19A2 Frame_Shift_Ins p.A347Cfs*39 0.23 TCGA-MX-A5UJ-01 1 17085014 17085014 G A MST1L RNA 0.07 TCGA-MX-A5UJ-01 1 175046698 175046698 C T TNN Silent p.I48I 0.29 TCGA-MX-A5UJ-01 1 175049362 175049362 A C TNN Missense_Mutation p.E283A 0.31 deleterious(0.03) benign(0.232) TCGA-MX-A5UJ-01 1 176564478 176564478 C T PAPPA2 Missense_Mutation p.R580W 0.16 deleterious(0) probably_damaging(0.998) TCGA-MX-A5UJ-01 1 179821836 179821836 T - TOR1AIP2 5'UTR 0.23 TCGA-MX-A5UJ-01 1 180163400 180163400 C T QSOX1 Silent p.F447F 0.23 TCGA-MX-A5UJ-01 1 180914638 180914639 - T KIAA1614 Frame_Shift_Ins p.P1164Sfs*10 0.16 TCGA-MX-A5UJ-01 1 181018211 181018211 C T MR1 Missense_Mutation p.R31C 0.29 tolerated(0.14) probably_damaging(0.943) TCGA-MX-A5UJ-01 1 181727095 181727095 G A CACNA1E Missense_Mutation p.D1448N 0.22 deleterious(0.03) possibly_damaging(0.555) TCGA-MX-A5UJ-01 1 181767885 181767885 G A CACNA1E Missense_Mutation p.R2286Q 0.18 tolerated(0.38) possibly_damaging(0.614) TCGA-MX-A5UJ-01 1 186282787 186282787 A - TPR 3'UTR 0.16 TCGA-MX-A5UJ-01 1 19615059 19615059 A G AKR7A3 Missense_Mutation p.Y49H 0.19 deleterious(0) probably_damaging(0.999) TCGA-MX-A5UJ-01 1 197009744 197009744 A C F13B Silent p.T620T 0.07 TCGA-MX-A5UJ-01 1 198225610 198225610 A - NEK7 Intron 0.43 TCGA-MX-A5UJ-01 1 200880780 200880780 A G C1orf106 Missense_Mutation p.S387G 0.20 deleterious(0.03) benign(0.015) TCGA-MX-A5UJ-01 1 200973992 200973992 T C KIF21B Missense_Mutation p.K268E 0.15 deleterious(0) benign(0.226) TCGA-MX-A5UJ-01 1 201195003 201195003 C T IGFN1 Missense_Mutation p.T3513M 0.26 probably_damaging(0.969) TCGA-MX-A5UJ-01 1 202985149 202985149 C T TMEM183A Missense_Mutation p.R197C 0.24 tolerated(0.17) benign(0.024) TCGA-MX-A5UJ-01 1 203044708 203044708 G A PPFIA4 Missense_Mutation p.D627N 0.15 tolerated(0.08) possibly_damaging(0.484) TCGA-MX-A5UJ-01 1 203148963 203148963 C T CHI3L1 Missense_Mutation p.G313S 0.25 tolerated(0.16) benign(0.02) TCGA-MX-A5UJ-01 1 203668653 203668653 G A ATP2B4 Missense_Mutation p.A153T 0.08 tolerated(0.08) probably_damaging(0.999) TCGA-MX-A5UJ-01 1 203683366 203683366 C T ATP2B4 Silent p.D789D 0.15 TCGA-MX-A5UJ-01 1 204401452 204401452 G A PIK3C2B Missense_Mutation p.T1344M 0.30 deleterious(0.01) benign(0.151) TCGA-MX-A5UJ-01 1 205038678 205038678 G A CNTN2 Missense_Mutation p.V729I 0.31 tolerated(1) benign(0.005) TCGA-MX-A5UJ-01 1 205273438 205273438 G - NUAK2 Frame_Shift_Del p.L343Sfs*137 0.18 TCGA-MX-A5UJ-01 1 21050627 21050627 A G SH2D5 Missense_Mutation p.Y250H 0.17 deleterious(0) probably_damaging(0.999) TCGA-MX-A5UJ-01 1 210577855 210577855 G A HHAT Silent p.T173T 0.26 TCGA-MX-A5UJ-01 1 21226367 21226367 A G EIF4G3 Missense_Mutation p.F558L 0.20 tolerated_low_confidence(0.63) benign(0.005) TCGA-MX-A5UJ-01 1 213414401 213414401 T C RPS6KC1 Missense_Mutation p.S528P 0.23 deleterious(0.04) possibly_damaging(0.739) TCGA-MX-A5UJ-01 1 214170585 214170585 G A PROX1 Missense_Mutation p.R236H 0.10 tolerated(0.25) probably_damaging(0.941) TCGA-MX-A5UJ-01 1 215793922 215793922 A - KCTD3 Frame_Shift_Del p.S806Vfs*16 0.12 TCGA-MX-A5UJ-01 1 220276857 220276857 T C IARS2 Missense_Mutation p.V340A 0.18 deleterious(0.01) benign(0.297) TCGA-MX-A5UJ-01 1 220970133 220970133 C A MARC1 Silent p.R200R 0.26 TCGA-MX-A5UJ-01 1 221057861 221057861 G A HLX Missense_Mutation p.G428S 0.26 tolerated_low_confidence(0.46) benign(0.01) TCGA-MX-A5UJ-01 1 22140998 22140998 G A LDLRAD2 Missense_Mutation p.G65R 0.25 tolerated(0.66) benign(0.001) TCGA-MX-A5UJ-01 1 22158149 22158149 G A HSPG2 Missense_Mutation p.S3783F 0.15 probably_damaging(0.999) TCGA-MX-A5UJ-01 1 22186421 22186421 G A HSPG2 Missense_Mutation p.R1697W 0.12 benign(0.178) TCGA-MX-A5UJ-01 1 221912919 221912919 C T DUSP10 Silent p.A56A 0.28 TCGA-MX-A5UJ-01 1 223177874 223177874 C T DISP1 Silent p.A1045A 0.30 TCGA-MX-A5UJ-01 1 224804717 224804717 G A CNIH3 5'UTR 0.17 TCGA-MX-A5UJ-01 1 227227896 227227898 AGG - CDC42BPA In_Frame_Del p.P1010del 0.23 TCGA-MX-A5UJ-01 1 228494865 228494865 C T OBSCN Missense_Mutation p.R5021C 0.16 benign(0.03) TCGA-MX-A5UJ-01 1 229678079 229678079 C T ABCB10 Missense_Mutation p.V321M 0.15 tolerated(0.09) possibly_damaging(0.487) TCGA-MX-A5UJ-01 1 231114993 231114994 TA - ARV1 Frame_Shift_Del p.Y48* 0.15 TCGA-MX-A5UJ-01 1 231362561 231362561 T - C1orf131 Frame_Shift_Del p.K206Rfs*4 0.20 TCGA-MX-A5UJ-01 1 23237054 23237054 G A EPHB2 Silent p.A895A 0.08 TCGA-MX-A5UJ-01 1 233807091 233807091 T A KCNK1 Missense_Mutation p.F276I 0.20 tolerated(0.1) benign(0.164) TCGA-MX-A5UJ-01 1 236371451 236371451 T G GPR137B Missense_Mutation p.L398R 0.12 tolerated_low_confidence(0.58) benign(0) TCGA-MX-A5UJ-01 1 237729878 237729878 G A RYR2 Missense_Mutation p.E1076K 0.21 benign(0.001) TCGA-MX-A5UJ-01 1 238053227 238053227 C T ZP4 Missense_Mutation p.A114T 0.25 tolerated(0.16) benign(0.006) TCGA-MX-A5UJ-01 1 23842929 23842929 C T E2F2 Missense_Mutation p.E315K 0.26 tolerated(1) benign(0) TCGA-MX-A5UJ-01 1 241798086 241798087 - T CHML Frame_Shift_Ins p.T328Nfs*2 0.15 TCGA-MX-A5UJ-01 1 241964540 241964540 G A WDR64 3'UTR 0.17 TCGA-MX-A5UJ-01 1 243542145 243542145 G T SDCCAG8 Missense_Mutation p.E532D 0.25 deleterious(0.01) possibly_damaging(0.894) TCGA-MX-A5UJ-01 1 24419572 24419572 G A MYOM3 Missense_Mutation p.R319W 0.34 tolerated(0.19) benign(0.052) TCGA-MX-A5UJ-01 1 244218317 244218317 C T ZBTB18 Missense_Mutation p.A414V 0.17 tolerated(0.51) benign(0.047) TCGA-MX-A5UJ-01 1 245026965 245026967 CTT - HNRNPU In_Frame_Del p.K215del 0.39 TCGA-MX-A5UJ-01 1 245850642 245850642 G A KIF26B Missense_Mutation p.A1453T 0.25 tolerated(0.17) unknown(0) TCGA-MX-A5UJ-01 1 247587800 247587800 C A NLRP3 Missense_Mutation p.P352H 0.18 deleterious(0) probably_damaging(1) TCGA-MX-A5UJ-01 1 248308797 248308797 T C OR2M5 Silent p.A116A 0.26 TCGA-MX-A5UJ-01 1 248525069 248525069 A C OR2T4 Missense_Mutation p.I63L 0.20 deleterious(0.04) benign(0.076) TCGA-MX-A5UJ-01 1 25568966 25568966 G T C1orf63 3'UTR 0.33 TCGA-MX-A5UJ-01 1 25747185 25747185 A - RHCE Frame_Shift_Del p.F31Lfs*8 0.21 TCGA-MX-A5UJ-01 1 25880440 25880440 G A LDLRAP1 Missense_Mutation p.R39Q 0.19 tolerated(0.15) benign(0.193) TCGA-MX-A5UJ-01 1 26387826 26387826 C T TRIM63 Splice_Site p.X111_splice 0.10 TCGA-MX-A5UJ-01 1 26511555 26511555 C A CNKSR1 Silent p.R396R 0.19 TCGA-MX-A5UJ-01 1 27088787 27088788 - G ARID1A Frame_Shift_Ins p.Q802Sfs*15 0.18 TCGA-MX-A5UJ-01 1 27107183 27107183 C A ARID1A Missense_Mutation p.P2265Q 0.21 benign(0.068) TCGA-MX-A5UJ-01 1 27680355 27680356 CT - SYTL1 3'UTR 0.14 TCGA-MX-A5UJ-01 1 27721004 27721004 G A GPR3 Silent p.L234L 0.10 TCGA-MX-A5UJ-01 1 27755387 27755387 G A WASF2 Missense_Mutation p.T5M 0.19 deleterious(0.04) unknown(0) TCGA-MX-A5UJ-01 1 28330930 28330930 G A EYA3 Missense_Mutation p.R304W 0.26 deleterious(0.01) probably_damaging(0.99) TCGA-MX-A5UJ-01 1 28920569 28920569 C A RAB42 Missense_Mutation p.H86Q 0.20 tolerated(0.21) benign(0.003) TCGA-MX-A5UJ-01 1 31194386 31194386 C T MATN1 Missense_Mutation p.A103T 0.16 tolerated(0.14) benign(0.009) TCGA-MX-A5UJ-01 1 32084832 32084832 C - HCRTR1 Frame_Shift_Del p.P15Lfs*63 0.22 TCGA-MX-A5UJ-01 1 32259758 32259758 G A SPOCD1 Missense_Mutation p.H784Y 0.32 deleterious(0.02) benign(0.123) TCGA-MX-A5UJ-01 1 32655672 32655672 G A TXLNA Missense_Mutation p.R262Q 0.31 tolerated(0.23) possibly_damaging(0.88) TCGA-MX-A5UJ-01 1 32829736 32829736 C A TSSK3 Missense_Mutation p.P229H 0.20 deleterious(0) probably_damaging(0.999) TCGA-MX-A5UJ-01 1 33234356 33234356 C T KIAA1522 Missense_Mutation p.S189L 0.15 deleterious(0.03) unknown(0) TCGA-MX-A5UJ-01 1 33330280 33330280 C - FNDC5 Frame_Shift_Del p.L132Ffs*69 0.24 TCGA-MX-A5UJ-01 1 3564023 3564023 C T WRAP73 Silent p.S57S 0.22 TCGA-MX-A5UJ-01 1 36319142 36319142 C T AGO4 Missense_Mutation p.P841L 0.17 tolerated(0.76) benign(0.005) TCGA-MX-A5UJ-01 1 36820884 36820884 T C STK40 Missense_Mutation p.K165E 0.18 tolerated(0.17) possibly_damaging(0.742) TCGA-MX-A5UJ-01 1 37325480 37325480 G A GRIK3 Missense_Mutation p.R309W 0.18 tolerated(0.06) possibly_damaging(0.679) TCGA-MX-A5UJ-01 1 38033289 38033289 C T GNL2 Silent p.A676A 0.16 TCGA-MX-A5UJ-01 1 39384905 39384905 C - RHBDL2 5'UTR 0.24 TCGA-MX-A5UJ-01 1 39827164 39827164 C T MACF1 Missense_Mutation p.R2134W 0.19 probably_damaging(0.924) TCGA-MX-A5UJ-01 1 40773388 40773388 G A COL9A2 Missense_Mutation p.T314M 0.25 tolerated(0.82) benign(0.001) TCGA-MX-A5UJ-01 1 40779936 40779936 G A COL9A2 Missense_Mutation p.P64S 0.19 tolerated(0.36) unknown(0) TCGA-MX-A5UJ-01 1 41289877 41289877 G A KCNQ4 Silent p.P413P 0.24 TCGA-MX-A5UJ-01 1 43778241 43778241 G A TIE1 Silent p.S632S 0.27 TCGA-MX-A5UJ-01 1 43908170 43908170 C T SZT2 Silent p.L2621L 0.22 TCGA-MX-A5UJ-01 1 44443458 44443458 C T ATP6V0B Intron 0.29 TCGA-MX-A5UJ-01 1 45810871 45810871 G A TESK2 Missense_Mutation p.R453W 0.21 deleterious(0) possibly_damaging(0.768) TCGA-MX-A5UJ-01 1 46156673 46156673 C T TMEM69 5'UTR 0.21 TCGA-MX-A5UJ-01 1 4715463 4715464 - C AJAP1 5'UTR 0.17 TCGA-MX-A5UJ-01 1 54671061 54671061 G A MRPL37 Silent p.T208T 0.23 TCGA-MX-A5UJ-01 1 55559716 55559716 C T USP24 Missense_Mutation p.R2083Q 0.30 tolerated(0.45) benign(0.44) TCGA-MX-A5UJ-01 1 57002669 57002669 G A PPAP2B Silent p.D85D 0.21 TCGA-MX-A5UJ-01 1 57169748 57169748 A - PRKAA2 Frame_Shift_Del p.K299Nfs*9 0.19 TCGA-MX-A5UJ-01 1 6257785 6257785 T - RPL22 Frame_Shift_Del p.K15Rfs*5 0.42 TCGA-MX-A5UJ-01 1 62579949 62579949 C T INADL Intron 0.35 TCGA-MX-A5UJ-01 1 6533171 6533171 T C PLEKHG5 Missense_Mutation p.R366G 0.12 deleterious(0) probably_damaging(0.943) TCGA-MX-A5UJ-01 1 66031254 66031254 T C LEPR Silent p.I2I 0.20 TCGA-MX-A5UJ-01 1 70904442 70904442 G A CTH Missense_Mutation p.R375Q 0.18 deleterious(0) probably_damaging(1) TCGA-MX-A5UJ-01 1 74507515 74507515 T C LRRIQ3 Missense_Mutation p.N367S 0.21 tolerated(0.31) benign(0) TCGA-MX-A5UJ-01 1 74835983 74835983 T C FPGT-TNNI3K Missense_Mutation p.L674S 0.22 deleterious(0.04) possibly_damaging(0.79) TCGA-MX-A5UJ-01 1 75204466 75204466 G T TYW3 Missense_Mutation p.Q116H 0.19 deleterious(0) possibly_damaging(0.869) TCGA-MX-A5UJ-01 1 7700521 7700521 C A CAMTA1 Missense_Mutation p.P191H 0.10 tolerated(0.08) probably_damaging(0.987) TCGA-MX-A5UJ-01 1 77334258 77334258 G A ST6GALNAC5 Missense_Mutation p.G31D 0.31 benign(0.243) TCGA-MX-A5UJ-01 1 85331365 85331365 G A LPAR3 Silent p.L147L 0.23 TCGA-MX-A5UJ-01 1 8927207 8927207 G A ENO1 Missense_Mutation p.A138V 0.20 deleterious_low_confidence(0) possibly_damaging(0.861) TCGA-MX-A5UJ-01 1 89448607 89448607 C T RBMXL1 Silent p.P301P 0.22 TCGA-MX-A5UJ-01 1 89522618 89522618 C A GBP1 Missense_Mutation p.R358S 0.27 tolerated(0.26) probably_damaging(0.995) TCGA-MX-A5UJ-01 1 90400023 90400023 C T LRRC8D Missense_Mutation p.R466C 0.19 deleterious(0) probably_damaging(0.911) TCGA-MX-A5UJ-01 1 94343012 94343013 - T DNTTIP2 Frame_Shift_Ins p.T160Nfs*8 0.18 TCGA-MX-A5UJ-01 1 94485137 94485137 C T ABCA4 Splice_Site p.X1732_splice 0.33 TCGA-MX-A5UJ-01 1 94543323 94543323 C T ABCA4 Missense_Mutation p.D493N 0.19 tolerated(0.47) benign(0.003) TCGA-MX-A5UJ-01 1 94668128 94668128 C T ARHGAP29 Missense_Mutation p.R372Q 0.19 deleterious(0) probably_damaging(0.996) TCGA-MX-A5UJ-01 20 1616924 1616924 C T SIRPG Missense_Mutation p.V220I 0.13 tolerated(0.11) benign(0.056) TCGA-MX-A5UJ-01 20 17614257 17614257 G A RRBP1 Nonsense_Mutation p.Q387* 0.32 TCGA-MX-A5UJ-01 20 18286334 18286334 G A ZNF133 Missense_Mutation p.A2T 0.22 tolerated(0.52) benign(0.331) TCGA-MX-A5UJ-01 20 18523668 18523668 C T SEC23B Missense_Mutation p.A506V 0.40 tolerated(0.57) benign(0.044) TCGA-MX-A5UJ-01 20 20024141 20024143 CTT - CRNKL1 In_Frame_Del p.E483del 0.19 TCGA-MX-A5UJ-01 20 20377371 20377371 G A RALGAPA2 3'UTR 0.11 TCGA-MX-A5UJ-01 20 21324732 21324732 C T XRN2 Missense_Mutation p.P472L 0.32 tolerated(0.31) benign(0.001) TCGA-MX-A5UJ-01 20 23028958 23028958 G A THBD Missense_Mutation p.A395V 0.15 tolerated(0.68) benign(0.007) TCGA-MX-A5UJ-01 20 23966552 23966552 G A GGTLC1 Missense_Mutation p.R122W 0.30 deleterious(0) possibly_damaging(0.849) TCGA-MX-A5UJ-01 20 24929933 24929933 G A CST7 5'UTR 0.15 TCGA-MX-A5UJ-01 20 25657650 25657650 G A ZNF337 Missense_Mutation p.R92W 0.20 tolerated(0.08) benign(0.135) TCGA-MX-A5UJ-01 20 30072050 30072050 C T REM1 Silent p.G238G 0.14 TCGA-MX-A5UJ-01 20 31760789 31760789 C T BPIFA2 Missense_Mutation p.A70V 0.07 tolerated(0.29) benign(0.145) TCGA-MX-A5UJ-01 20 36488707 36488707 C T CTNNBL1 Nonsense_Mutation p.R522* 0.08 TCGA-MX-A5UJ-01 20 36954769 36954769 G A BPI Missense_Mutation p.V370M 0.16 tolerated(0.64) benign(0.024) TCGA-MX-A5UJ-01 20 40790157 40790157 G A PTPRT Silent p.S839S 0.11 TCGA-MX-A5UJ-01 20 42198046 42198046 C T SGK2 Missense_Mutation p.R144C 0.20 deleterious(0) probably_damaging(0.999) TCGA-MX-A5UJ-01 20 42935801 42935801 C T FITM2 Missense_Mutation p.G85S 0.18 tolerated(0.43) possibly_damaging(0.673) TCGA-MX-A5UJ-01 20 43058338 43058338 C - HNF4A 3'UTR 0.24 TCGA-MX-A5UJ-01 20 43944933 43944933 C T RBPJL Missense_Mutation p.A376V 0.23 deleterious(0.03) benign(0.007) TCGA-MX-A5UJ-01 20 45891102 45891102 T C ZMYND8 Silent p.Q517Q 0.19 TCGA-MX-A5UJ-01 20 46307495 46307495 G A SULF2 Missense_Mutation p.A373V 0.22 deleterious(0) probably_damaging(0.996) TCGA-MX-A5UJ-01 20 47611046 47611046 C T ARFGEF2 Missense_Mutation p.T1011M 0.20 deleterious(0.03) benign(0.042) TCGA-MX-A5UJ-01 20 47739699 47739699 T - STAU1 Frame_Shift_Del p.K299Rfs*22 0.23 TCGA-MX-A5UJ-01 20 48522570 48522570 G A SPATA2 Silent p.C383C 0.24 TCGA-MX-A5UJ-01 20 48522746 48522746 G A SPATA2 Missense_Mutation p.R325C 0.18 deleterious(0.02) probably_damaging(0.985) TCGA-MX-A5UJ-01 20 48522830 48522830 A G SPATA2 Missense_Mutation p.S297P 0.20 deleterious(0) probably_damaging(0.999) TCGA-MX-A5UJ-01 20 50049108 50049108 C T NFATC2 Missense_Mutation p.A740T 0.19 deleterious(0.03) benign(0.003) TCGA-MX-A5UJ-01 20 50346454 50346454 C - ATP9A Frame_Shift_Del p.H45Tfs*53 0.20 TCGA-MX-A5UJ-01 20 50400936 50400936 G A SALL4 Silent p.N1010N 0.26 TCGA-MX-A5UJ-01 20 5294844 5294844 T C PROKR2 Missense_Mutation p.I58V 0.34 tolerated(1) benign(0) TCGA-MX-A5UJ-01 20 56929278 56929278 C T RAB22A Silent p.S148S 0.15 TCGA-MX-A5UJ-01 20 57042282 57042282 C T APCDD1L Silent p.P207P 0.25 TCGA-MX-A5UJ-01 20 60991218 60991218 A G RBBP8NL Splice_Site p.X129_splice 0.25 TCGA-MX-A5UJ-01 20 61542400 61542400 G A DIDO1 Missense_Mutation p.R189W 0.17 probably_damaging(0.983) TCGA-MX-A5UJ-01 20 61907912 61907912 G A ARFGAP1 Missense_Mutation p.R84Q 0.11 deleterious(0.02) benign(0.028) TCGA-MX-A5UJ-01 20 62294213 62294213 G A RTEL1 Missense_Mutation p.R194H 0.20 tolerated(0.08) benign(0.249) TCGA-MX-A5UJ-01 20 62331784 62331784 C T ARFRP1 3'UTR 0.23 TCGA-MX-A5UJ-01 20 62407156 62407156 G A ZBTB46 Missense_Mutation p.A366V 0.11 tolerated(0.11) benign(0.057) TCGA-MX-A5UJ-01 20 62421706 62421706 C T ZBTB46 Silent p.S135S 0.27 TCGA-MX-A5UJ-01 20 62664241 62664241 G T PRPF6 Silent p.R907R 0.19 TCGA-MX-A5UJ-01 20 6750905 6750905 G T BMP2 Missense_Mutation p.Q44H 0.18 tolerated(0.13) benign(0.27) TCGA-MX-A5UJ-01 20 9417772 9417772 C T PLCB4 Silent p.L901L 0.29 TCGA-MX-A5UJ-01 21 18966594 18966595 - T BTG3 Frame_Shift_Ins p.P237Afs*29 0.20 TCGA-MX-A5UJ-01 21 22707929 22707929 G A NCAM2 Missense_Mutation p.C281Y 0.25 deleterious(0) probably_damaging(1) TCGA-MX-A5UJ-01 21 27097572 27097572 G A ATP5J Missense_Mutation p.A93V 0.17 tolerated(0.15) benign(0.035) TCGA-MX-A5UJ-01 21 31311860 31311860 G A GRIK1 5'UTR 0.19 TCGA-MX-A5UJ-01 21 32525063 32525063 C A TIAM1 Missense_Mutation p.G1086V 0.11 deleterious(0) probably_damaging(0.997) TCGA-MX-A5UJ-01 21 36081085 36081085 G A CLIC6 Silent p.T566T 0.32 TCGA-MX-A5UJ-01 21 37709257 37709257 C T MORC3 Silent p.T66T 0.23 TCGA-MX-A5UJ-01 21 37781728 37781728 C T CHAF1B Missense_Mutation p.P295L 0.18 deleterious(0) probably_damaging(1) TCGA-MX-A5UJ-01 21 40558989 40558989 A - BRWD1 Frame_Shift_Del p.L2309* 0.21 TCGA-MX-A5UJ-01 21 41741061 41741061 G A DSCAM Missense_Mutation p.T207M 0.13 deleterious(0.04) probably_damaging(0.997) TCGA-MX-A5UJ-01 21 43161737 43161737 G A RIPK4 Missense_Mutation p.T539M 0.12 deleterious(0) benign(0.113) TCGA-MX-A5UJ-01 21 43187099 43187099 G A RIPK4 Nonsense_Mutation p.Q35* 0.14 TCGA-MX-A5UJ-01 21 43510525 43510525 G A UMODL1 Missense_Mutation p.R303Q 0.08 tolerated(1) possibly_damaging(0.712) TCGA-MX-A5UJ-01 21 43963564 43963564 G A SLC37A1 Silent p.G194G 0.17 TCGA-MX-A5UJ-01 21 45544600 45544600 G A PWP2 Missense_Mutation p.A653T 0.07 deleterious(0) probably_damaging(0.973) TCGA-MX-A5UJ-01 21 45563093 45563093 C T C21orf33 Silent p.C176C 0.29 TCGA-MX-A5UJ-01 21 45710773 45710773 G - AIRE Intron 0.23 TCGA-MX-A5UJ-01 21 47545769 47545769 T C COL6A2 Silent p.R680R 0.12 TCGA-MX-A5UJ-01 21 47571522 47571523 - T FTCD Frame_Shift_Ins p.A196Sfs*33 0.23 TCGA-MX-A5UJ-01 21 47703567 47703567 G A MCM3AP Missense_Mutation p.R469C 0.19 tolerated(0.11) probably_damaging(0.997) TCGA-MX-A5UJ-01 21 47987422 47987422 G A DIP2A Missense_Mutation p.V1535M 0.12 deleterious(0) probably_damaging(0.971) TCGA-MX-A5UJ-01 22 17583054 17583054 C T IL17RA Silent p.T208T 0.19 TCGA-MX-A5UJ-01 22 18003312 18003312 C T CECR2 Missense_Mutation p.R334C 0.15 tolerated_low_confidence(0.19) benign(0) TCGA-MX-A5UJ-01 22 19119015 19119015 A G TSSK2 Missense_Mutation p.K35E 0.18 tolerated(0.08) benign(0.348) TCGA-MX-A5UJ-01 22 20024332 20024334 TCT - TANGO2 In_Frame_Del p.F6del 0.29 TCGA-MX-A5UJ-01 22 21119159 21119159 A C PI4KA Missense_Mutation p.L885R 0.23 deleterious(0) probably_damaging(0.99) TCGA-MX-A5UJ-01 22 21989105 21989105 C T CCDC116 Silent p.G251G 0.20 TCGA-MX-A5UJ-01 22 22057674 22057674 C T YPEL1 Silent p.T85T 0.15 TCGA-MX-A5UJ-01 22 22317214 22317214 G A TOP3B Missense_Mutation p.T419M 0.33 deleterious(0) probably_damaging(0.989) TCGA-MX-A5UJ-01 22 22599401 22599401 C A VPREB1 Silent p.S30S 0.21 TCGA-MX-A5UJ-01 22 23437880 23437880 A G GNAZ 5'UTR 0.19 TCGA-MX-A5UJ-01 22 26861447 26861447 G A HPS4 Silent p.H259H 0.21 TCGA-MX-A5UJ-01 22 29494865 29494865 C T KREMEN1 Silent p.D92D 0.22 TCGA-MX-A5UJ-01 22 30057232 30057232 C A NF2 Silent p.A238A 0.30 TCGA-MX-A5UJ-01 22 30951368 30951368 G A GAL3ST1 Missense_Mutation p.R282C 0.18 deleterious(0.01) probably_damaging(0.953) TCGA-MX-A5UJ-01 22 31322775 31322776 CT - MORC2 3'UTR 0.25 TCGA-MX-A5UJ-01 22 31522653 31522653 G A INPP5J Silent p.T112T 0.19 TCGA-MX-A5UJ-01 22 31731681 31731681 G A PATZ1 Nonsense_Mutation p.R502* 0.19 TCGA-MX-A5UJ-01 22 31741055 31741056 - G PATZ1 Frame_Shift_Ins p.G179Wfs*121 0.19 TCGA-MX-A5UJ-01 22 36157469 36157469 T C RBFOX2 Silent p.L288L 0.14 TCGA-MX-A5UJ-01 22 37273731 37273731 C T NCF4 3'UTR 0.15 TCGA-MX-A5UJ-01 22 38051314 38051314 C - SH3BP1 Frame_Shift_Del p.Q579Rfs*79 0.21 TCGA-MX-A5UJ-01 22 38119549 38119549 C - TRIOBP Frame_Shift_Del p.R331Gfs*548 0.16 TCGA-MX-A5UJ-01 22 38121820 38121820 C A TRIOBP Missense_Mutation p.P1086H 0.25 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-MX-A5UJ-01 22 38130884 38130885 - C TRIOBP Frame_Shift_Ins p.E1517* 0.15 TCGA-MX-A5UJ-01 22 38221152 38221152 G A GALR3 Missense_Mutation p.G261D 0.25 deleterious(0) probably_damaging(0.999) TCGA-MX-A5UJ-01 22 38494465 38494465 G A BAIAP2L2 Silent p.L101L 0.19 TCGA-MX-A5UJ-01 22 38823864 38823864 C A KCNJ4 Missense_Mutation p.G92W 0.23 deleterious(0.03) probably_damaging(0.951) TCGA-MX-A5UJ-01 22 39263028 39263028 C - CBX6 Frame_Shift_Del p.G142Afs*23 0.30 TCGA-MX-A5UJ-01 22 41721568 41721568 G A ZC3H7B Silent p.Q18Q 0.14 TCGA-MX-A5UJ-01 22 41735182 41735182 T C ZC3H7B Missense_Mutation p.L268P 0.17 deleterious(0.04) probably_damaging(0.986) TCGA-MX-A5UJ-01 22 42564716 42564716 G - TCF20 Frame_Shift_Del p.L1943Cfs*118 0.36 TCGA-MX-A5UJ-01 22 42605684 42605684 C A TCF20 Missense_Mutation p.Q1876H 0.23 probably_damaging(0.979) TCGA-MX-A5UJ-01 22 43687107 43687107 G A SCUBE1 Silent p.C143C 0.10 TCGA-MX-A5UJ-01 22 45599010 45599010 C T KIAA0930 Missense_Mutation p.S243N 0.18 tolerated(1) benign(0.002) TCGA-MX-A5UJ-01 22 46773156 46773156 G A CELSR1 Silent p.N2462N 0.26 TCGA-MX-A5UJ-01 22 46931227 46931227 C - CELSR1 Frame_Shift_Del p.G614Afs*54 0.27 TCGA-MX-A5UJ-01 22 50280310 50280310 G A ZBED4 Silent p.P1000P 0.23 TCGA-MX-A5UJ-01 22 50537979 50537979 C T MOV10L1 Silent p.G130G 0.30 TCGA-MX-A5UJ-01 22 50635950 50635950 G A TRABD Missense_Mutation p.A202T 0.28 deleterious(0.02) probably_damaging(0.969) TCGA-MX-A5UJ-01 22 50656199 50656199 C T TUBGCP6 Missense_Mutation p.R1809H 0.10 deleterious(0) probably_damaging(0.923) TCGA-MX-A5UJ-01 22 50657735 50657735 G A TUBGCP6 Missense_Mutation p.T1489M 0.23 tolerated(0.12) possibly_damaging(0.56) TCGA-MX-A5UJ-01 22 50927726 50927726 T C MIOX Splice_Site p.X196_splice 0.25 TCGA-MX-A5UJ-01 2 100027276 100027278 TCT - REV1 In_Frame_Del p.R742del 0.29 TCGA-MX-A5UJ-01 2 10263175 10263175 C A RRM2 Silent p.P115P 0.27 TCGA-MX-A5UJ-01 2 105472922 105472922 G A POU3F3 Silent p.T318T 0.39 TCGA-MX-A5UJ-01 2 105473431 105473431 C T POU3F3 Missense_Mutation p.T488M 0.16 deleterious_low_confidence(0) possibly_damaging(0.904) TCGA-MX-A5UJ-01 2 107460447 107460447 G A ST6GAL2 5'UTR 0.17 TCGA-MX-A5UJ-01 2 108614308 108614308 G A SLC5A7 Missense_Mutation p.V155M 0.20 deleterious(0) probably_damaging(0.969) TCGA-MX-A5UJ-01 2 109964324 109964324 C T SH3RF3 Silent p.H256H 0.12 TCGA-MX-A5UJ-01 2 114257336 114257336 T C FOXD4L1 Missense_Mutation p.I168T 0.18 deleterious(0) probably_damaging(0.99) TCGA-MX-A5UJ-01 2 11780527 11780527 G A GREB1 Missense_Mutation p.A1933T 0.18 deleterious(0) probably_damaging(0.999) TCGA-MX-A5UJ-01 2 119604338 119604338 C T EN1 Missense_Mutation p.A136T 0.11 tolerated(0.07) benign(0.022) TCGA-MX-A5UJ-01 2 119726815 119726815 C T MARCO Silent p.G59G 0.25 TCGA-MX-A5UJ-01 2 121992863 121992863 C T TFCP2L1 Missense_Mutation p.R343Q 0.19 deleterious(0.02) benign(0.023) TCGA-MX-A5UJ-01 2 121997142 121997142 G A TFCP2L1 Silent p.L284L 0.18 TCGA-MX-A5UJ-01 2 128046958 128046958 T A ERCC3 Missense_Mutation p.E259D 0.16 tolerated(0.76) benign(0.003) TCGA-MX-A5UJ-01 2 128394918 128394918 T C MYO7B Missense_Mutation p.S2093P 0.20 deleterious(0) probably_damaging(0.997) TCGA-MX-A5UJ-01 2 128467288 128467288 G A WDR33 Nonsense_Mutation p.R1151* 0.20 TCGA-MX-A5UJ-01 2 130930891 130930891 A G SMPD4 Silent p.A141A 0.24 TCGA-MX-A5UJ-01 2 131520179 131520179 G A AMER3 Silent p.A178A 0.16 TCGA-MX-A5UJ-01 2 131797695 131797695 G A ARHGEF4 Missense_Mutation p.R285Q 0.26 deleterious(0) probably_damaging(0.993) TCGA-MX-A5UJ-01 2 132010512 132010512 G A POTEE Missense_Mutation p.E540K 0.12 deleterious_low_confidence(0) benign(0.305) TCGA-MX-A5UJ-01 2 133542671 133542671 G A NCKAP5 Silent p.G571G 0.17 TCGA-MX-A5UJ-01 2 137852593 137852593 C T THSD7B Silent p.N367N 0.13 TCGA-MX-A5UJ-01 2 148654069 148654069 C A ACVR2A Nonsense_Mutation p.C85* 0.24 TCGA-MX-A5UJ-01 2 149679726 149679726 C T KIF5C Silent p.F49F 0.31 TCGA-MX-A5UJ-01 2 15614418 15614418 G A NBAS Missense_Mutation p.R458C 0.27 deleterious(0.01) probably_damaging(0.977) TCGA-MX-A5UJ-01 2 15615934 15615934 G T NBAS Nonsense_Mutation p.C406* 0.22 TCGA-MX-A5UJ-01 2 159522968 159522969 - C PKP4 Frame_Shift_Ins p.I876Hfs*10 0.19 TCGA-MX-A5UJ-01 2 160028692 160028692 G T TANC1 Missense_Mutation p.S471I 0.17 deleterious(0.03) benign(0.046) TCGA-MX-A5UJ-01 2 160087129 160087129 C T TANC1 Missense_Mutation p.A1731V 0.19 tolerated_low_confidence(0.08) probably_damaging(0.999) TCGA-MX-A5UJ-01 2 162273011 162273011 C T TBR1 Silent p.S30S 0.20 TCGA-MX-A5UJ-01 2 166211078 166211078 C A SCN2A Missense_Mutation p.P1099H 0.10 deleterious(0) probably_damaging(0.967) TCGA-MX-A5UJ-01 2 168102908 168102908 A G XIRP2 Missense_Mutation p.E1669G 0.19 benign(0.085) TCGA-MX-A5UJ-01 2 169842772 169842772 C T ABCB11 Missense_Mutation p.A311T 0.19 deleterious(0) probably_damaging(1) TCGA-MX-A5UJ-01 2 170863622 170863622 G A UBR3 Nonsense_Mutation p.W1384* 0.15 TCGA-MX-A5UJ-01 2 175213408 175213408 G A CIR1 Silent p.S390S 0.24 TCGA-MX-A5UJ-01 2 176957922 176957922 C - HOXD13 Frame_Shift_Del p.P103Qfs*163 0.26 TCGA-MX-A5UJ-01 2 177053883 177053883 G A HOXD1 Silent p.P118P 0.17 TCGA-MX-A5UJ-01 2 177053911 177053911 G A HOXD1 Missense_Mutation p.G128S 0.18 tolerated(0.61) benign(0.013) TCGA-MX-A5UJ-01 2 179453946 179453946 G A TTN Nonsense_Mutation p.R20836* 0.20 TCGA-MX-A5UJ-01 2 179455557 179455557 C T TTN Missense_Mutation p.G20299S 0.20 TCGA-MX-A5UJ-01 2 179517034 179517034 C T TTN Silent p.V13056V 0.06 TCGA-MX-A5UJ-01 2 179611301 179611301 C T TTN Intron 0.25 TCGA-MX-A5UJ-01 2 182543157 182543157 C T NEUROD1 Missense_Mutation p.R144H 0.21 deleterious(0) probably_damaging(1) TCGA-MX-A5UJ-01 2 1890329 1890329 G A MYT1L Missense_Mutation p.T896I 0.31 deleterious(0.04) benign(0.329) TCGA-MX-A5UJ-01 2 189916092 189916092 G - COL5A2 Frame_Shift_Del p.P962Lfs*58 0.18 TCGA-MX-A5UJ-01 2 189923219 189923219 G T COL5A2 Missense_Mutation p.P722H 0.14 unknown(0) TCGA-MX-A5UJ-01 2 1926428 1926428 C T MYT1L Silent p.T371T 0.28 TCGA-MX-A5UJ-01 2 1926821 1926821 G A MYT1L Silent p.N240N 0.10 TCGA-MX-A5UJ-01 2 198570341 198570341 C T MARS2 Missense_Mutation p.A71V 0.15 tolerated(0.09) benign(0.264) TCGA-MX-A5UJ-01 2 198643760 198643760 A - BOLL Frame_Shift_Del p.S66Pfs*6 0.21 TCGA-MX-A5UJ-01 2 200136824 200136825 - A SATB2 3'UTR 0.38 TCGA-MX-A5UJ-01 2 200136878 200136878 A C SATB2 3'UTR 0.25 TCGA-MX-A5UJ-01 2 201436466 201436466 A C SGOL2 Missense_Mutation p.Q466P 0.24 tolerated(0.33) benign(0.043) TCGA-MX-A5UJ-01 2 201515800 201515800 C T AOX1 Missense_Mutation p.S984F 0.24 deleterious(0) probably_damaging(0.982) TCGA-MX-A5UJ-01 2 202507375 202507375 C A TMEM237 Intron 0.18 TCGA-MX-A5UJ-01 2 204324708 204324710 AAG - RAPH1 In_Frame_Del p.L338del 0.19 TCGA-MX-A5UJ-01 2 207041026 207041026 G A GPR1 Missense_Mutation p.R316W 0.22 deleterious(0.02) possibly_damaging(0.724) TCGA-MX-A5UJ-01 2 207620231 207620231 T C MDH1B Splice_Site p.X138_splice 0.18 TCGA-MX-A5UJ-01 2 210557554 210557554 A G MAP2 Silent p.K220K 0.19 TCGA-MX-A5UJ-01 2 211464179 211464179 T C CPS1 Silent p.T487T 0.25 TCGA-MX-A5UJ-01 2 212989586 212989586 A G ERBB4 Missense_Mutation p.L42P 0.20 tolerated(0.22) benign(0.045) TCGA-MX-A5UJ-01 2 216245734 216245734 C T FN1 Missense_Mutation p.S1745N 0.22 deleterious(0.01) probably_damaging(0.995) TCGA-MX-A5UJ-01 2 216271857 216271857 T C FN1 Silent p.P902P 0.35 TCGA-MX-A5UJ-01 2 217528838 217528838 G A IGFBP2 3'UTR 0.22 TCGA-MX-A5UJ-01 2 218762676 218762676 G A TNS1 Missense_Mutation p.R5W 0.18 deleterious(0.03) possibly_damaging(0.556) TCGA-MX-A5UJ-01 2 219480727 219480728 - A PLCD4 Frame_Shift_Ins p.N42Kfs*2 0.25 TCGA-MX-A5UJ-01 2 219513771 219513771 C T ZNF142 Missense_Mutation p.R287H 0.27 tolerated(0.52) possibly_damaging(0.522) TCGA-MX-A5UJ-01 2 219513792 219513792 G A ZNF142 Missense_Mutation p.A280V 0.24 tolerated(0.15) possibly_damaging(0.483) TCGA-MX-A5UJ-01 2 219738388 219738388 G A WNT6 Missense_Mutation p.G307S 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-MX-A5UJ-01 2 219825132 219825132 G A CDK5R2 Missense_Mutation p.R197H 0.19 deleterious(0) benign(0.192) TCGA-MX-A5UJ-01 2 220085865 220085865 G C ATG9A Missense_Mutation p.P769A 0.20 tolerated_low_confidence(0.14) benign(0.026) TCGA-MX-A5UJ-01 2 220334066 220334066 G A SPEG Missense_Mutation p.R1227H 0.26 probably_damaging(0.996) TCGA-MX-A5UJ-01 2 220350083 220350083 G T SPEG Missense_Mutation p.R2542L 0.19 probably_damaging(0.994) TCGA-MX-A5UJ-01 2 220424007 220424007 C T OBSL1 Missense_Mutation p.G1056R 0.19 deleterious(0.02) possibly_damaging(0.884) TCGA-MX-A5UJ-01 2 220498034 220498034 G C SLC4A3 Missense_Mutation p.R466P 0.15 deleterious(0.03) benign(0.172) TCGA-MX-A5UJ-01 2 224856532 224856532 C T SERPINE2 Missense_Mutation p.V237M 0.20 tolerated(0.24) possibly_damaging(0.805) TCGA-MX-A5UJ-01 2 226378158 226378158 C T NYAP2 Missense_Mutation p.T98I 0.07 deleterious(0.04) benign(0.142) TCGA-MX-A5UJ-01 2 226447072 226447072 C - NYAP2 Frame_Shift_Del p.K316Rfs*57 0.33 TCGA-MX-A5UJ-01 2 233216 233216 T C SH3YL1 Missense_Mutation p.N140D 0.22 tolerated(0.89) benign(0.001) TCGA-MX-A5UJ-01 2 233398937 233398937 G A CHRND Missense_Mutation p.R419Q 0.19 tolerated(0.58) benign(0.009) TCGA-MX-A5UJ-01 2 235404738 235404738 C A ARL4C Missense_Mutation p.G165C 0.33 deleterious(0) probably_damaging(1) TCGA-MX-A5UJ-01 2 235404747 235404747 C T ARL4C Missense_Mutation p.A162T 0.14 deleterious(0) probably_damaging(0.987) TCGA-MX-A5UJ-01 2 238268729 238268729 A G COL6A3 Splice_Site p.X2094_splice 0.16 TCGA-MX-A5UJ-01 2 239039156 239039156 C T ESPNL Missense_Mutation p.R601C 0.29 deleterious(0) probably_damaging(0.972) TCGA-MX-A5UJ-01 2 241078682 241078682 C - OTOS Frame_Shift_Del p.A59Pfs*? 0.12 TCGA-MX-A5UJ-01 2 241533993 241533993 A G CAPN10 Silent p.V288V 0.17 TCGA-MX-A5UJ-01 2 25062881 25062881 T C ADCY3 Missense_Mutation p.K406E 0.21 tolerated(0.06) benign(0.411) TCGA-MX-A5UJ-01 2 25383908 25383908 C T POMC 3'UTR 0.20 TCGA-MX-A5UJ-01 2 26204118 26204118 A G KIF3C Silent p.T223T 0.30 TCGA-MX-A5UJ-01 2 272080 272081 - C ACP1 Intron 0.24 TCGA-MX-A5UJ-01 2 27529183 27529183 G A TRIM54 Silent p.L365L 0.08 TCGA-MX-A5UJ-01 2 29022185 29022185 A G PPP1CB 3'UTR 0.17 TCGA-MX-A5UJ-01 2 31596794 31596794 G A XDH Missense_Mutation p.A544V 0.20 tolerated(0.31) benign(0.001) TCGA-MX-A5UJ-01 2 32853435 32853435 G A TTC27 Missense_Mutation p.V26I 0.11 tolerated_low_confidence(0.46) benign(0.002) TCGA-MX-A5UJ-01 2 33812389 33812389 T C FAM98A Splice_Site p.X175_splice 0.25 TCGA-MX-A5UJ-01 2 37032748 37032749 - T VIT Frame_Shift_Ins p.E445* 0.20 TCGA-MX-A5UJ-01 2 37297476 37297476 G A HEATR5B Missense_Mutation p.A275V 0.20 tolerated(0.11) benign(0.029) TCGA-MX-A5UJ-01 2 39535143 39535143 C T MAP4K3 Missense_Mutation p.D354N 0.23 tolerated(0.17) benign(0) TCGA-MX-A5UJ-01 2 40657012 40657012 G A SLC8A1 Silent p.L137L 0.13 TCGA-MX-A5UJ-01 2 42991089 42991089 C - OXER1 Frame_Shift_Del p.S78Pfs*64 0.21 TCGA-MX-A5UJ-01 2 43452623 43452623 C - ZFP36L2 Frame_Shift_Del p.G107Afs*80 0.24 TCGA-MX-A5UJ-01 2 44126409 44126409 G A LRPPRC Silent p.F1258F 0.07 TCGA-MX-A5UJ-01 2 45169458 45169458 C - SIX3 Frame_Shift_Del p.P74Rfs*177 0.20 TCGA-MX-A5UJ-01 2 54849501 54849501 T C SPTBN1 Missense_Mutation p.L314P 0.09 deleterious(0) probably_damaging(1) TCGA-MX-A5UJ-01 2 5833867 5833867 G A SOX11 Silent p.S338S 0.17 TCGA-MX-A5UJ-01 2 61275793 61275793 C T PEX13 Missense_Mutation p.A367V 0.17 tolerated(0.07) benign(0.005) TCGA-MX-A5UJ-01 2 61413633 61413633 G A AHSA2 Splice_Site p.X82_splice 0.15 TCGA-MX-A5UJ-01 2 65299492 65299492 C T CEP68 Missense_Mutation p.A421V 0.11 tolerated(0.75) benign(0.001) TCGA-MX-A5UJ-01 2 69590694 69590694 C T GFPT1 Missense_Mutation p.R111H 0.22 deleterious(0.01) probably_damaging(0.982) TCGA-MX-A5UJ-01 2 70188557 70188557 G A ASPRV1 Silent p.S88S 0.07 TCGA-MX-A5UJ-01 2 70890680 70890680 C T ADD2 Silent p.S686S 0.19 TCGA-MX-A5UJ-01 2 73053045 73053045 G - EXOC6B 5'UTR 0.14 TCGA-MX-A5UJ-01 2 74140744 74140745 - AG ACTG2 Frame_Shift_Ins p.G198Efs*6 0.19 TCGA-MX-A5UJ-01 2 79314001 79314001 G T REG1B Silent p.T40T 0.18 TCGA-MX-A5UJ-01 2 80808939 80808939 G A CTNNA2 Missense_Mutation p.A668T 0.34 tolerated(0.67) benign(0.146) TCGA-MX-A5UJ-01 2 85981555 85981555 G A ATOH8 Silent p.A81A 0.25 TCGA-MX-A5UJ-01 2 86308084 86308084 C T POLR1A Missense_Mutation p.R314H 0.17 tolerated(0.54) probably_damaging(0.992) TCGA-MX-A5UJ-01 2 90108571 90108571 G T IGKV6D-41 Missense_Mutation p.W14C 0.12 deleterious(0.05) benign(0.229) TCGA-MX-A5UJ-01 2 96795654 96795654 G A ASTL Silent p.I261I 0.27 TCGA-MX-A5UJ-01 2 96935059 96935059 G A CIAO1 Missense_Mutation p.G249S 0.21 deleterious(0) probably_damaging(1) TCGA-MX-A5UJ-01 2 97024900 97024900 G A NCAPH Silent p.P442P 0.13 TCGA-MX-A5UJ-01 3 100020915 100020915 T C TBC1D23 Missense_Mutation p.L366P 0.20 deleterious(0) probably_damaging(0.996) TCGA-MX-A5UJ-01 3 100084250 100084250 C A TOMM70A 3'UTR 0.38 TCGA-MX-A5UJ-01 3 100469455 100469455 C T ABI3BP Splice_Site p.X1038_splice 0.20 TCGA-MX-A5UJ-01 3 101483744 101483744 G A CEP97 Nonsense_Mutation p.W649* 0.10 TCGA-MX-A5UJ-01 3 10242124 10242124 G A IRAK2 Missense_Mutation p.A117T 0.28 tolerated(0.43) benign(0.157) TCGA-MX-A5UJ-01 3 10858173 10858173 C - SLC6A11 Frame_Shift_Del p.R75Afs*15 0.18 TCGA-MX-A5UJ-01 3 111849414 111849416 CTT - GCSAM Intron 0.20 TCGA-MX-A5UJ-01 3 112005610 112005610 A - SLC9C1 Frame_Shift_Del p.F10Sfs*11 0.29 TCGA-MX-A5UJ-01 3 114058003 114058003 G - ZBTB20 Frame_Shift_Del p.P692Lfs*43 0.16 TCGA-MX-A5UJ-01 3 118623607 118623608 - A IGSF11 Frame_Shift_Ins p.G248Wfs*26 0.11 TCGA-MX-A5UJ-01 3 118937618 118937618 A G B4GALT4 Silent p.L226L 0.22 TCGA-MX-A5UJ-01 3 119634948 119634948 G A GSK3B Missense_Mutation p.P184L 0.19 deleterious(0) probably_damaging(1) TCGA-MX-A5UJ-01 3 121001163 121001163 C T STXBP5L Missense_Mutation p.R721W 0.14 deleterious(0.01) possibly_damaging(0.77) TCGA-MX-A5UJ-01 3 121409851 121409852 TC - GOLGB1 Frame_Shift_Del p.D2787Cfs*5 0.22 TCGA-MX-A5UJ-01 3 122646697 122646697 G A SEMA5B Missense_Mutation p.R318C 0.20 deleterious(0) probably_damaging(1) TCGA-MX-A5UJ-01 3 126062592 126062592 C T KLF15 Missense_Mutation p.R410H 0.17 deleterious(0) possibly_damaging(0.84) TCGA-MX-A5UJ-01 3 129324762 129324762 G A PLXND1 Missense_Mutation p.R241C 0.12 deleterious(0) probably_damaging(1) TCGA-MX-A5UJ-01 3 131188567 131188567 G A MRPL3 Silent p.N263N 0.17 TCGA-MX-A5UJ-01 3 134077461 134077462 - G AMOTL2 Frame_Shift_Ins p.D736Rfs*12 0.17 TCGA-MX-A5UJ-01 3 134280320 134280320 T G CEP63 Missense_Mutation p.I685M 0.25 deleterious(0) probably_damaging(0.999) TCGA-MX-A5UJ-01 3 134884865 134884865 G A EPHB1 Silent p.A547A 0.18 TCGA-MX-A5UJ-01 3 138433362 138433362 G A PIK3CB Missense_Mutation p.T417M 0.19 deleterious(0.03) probably_damaging(0.967) TCGA-MX-A5UJ-01 3 138738760 138738760 C T PRR23B Silent p.S248S 0.20 TCGA-MX-A5UJ-01 3 141164860 141164860 T - ZBTB38 3'UTR 0.31 TCGA-MX-A5UJ-01 3 1414122 1414122 A - CNTN6 Frame_Shift_Del p.G547Efs*16 0.26 TCGA-MX-A5UJ-01 3 142231106 142231106 T C ATR Silent p.S1616S 0.16 TCGA-MX-A5UJ-01 3 142681986 142681986 G A PAQR9 Missense_Mutation p.R65C 0.18 tolerated(0.12) probably_damaging(0.973) TCGA-MX-A5UJ-01 3 142682042 142682042 C T PAQR9 Missense_Mutation p.R46H 0.33 deleterious(0.03) benign(0.051) TCGA-MX-A5UJ-01 3 14535243 14535243 C T SLC6A6 3'Flank 0.16 TCGA-MX-A5UJ-01 3 147106593 147106593 C T ZIC4 3'UTR 0.21 TCGA-MX-A5UJ-01 3 148847595 148847595 G T HPS3 Missense_Mutation p.G29W 0.28 deleterious(0) probably_damaging(0.998) TCGA-MX-A5UJ-01 3 150127428 150127428 G T TSC22D2 Silent p.A97A 0.21 TCGA-MX-A5UJ-01 3 15065690 15065690 C T NR2C2 Missense_Mutation p.T277I 0.18 deleterious(0.03) benign(0.007) TCGA-MX-A5UJ-01 3 151165659 151165659 T C IGSF10 Missense_Mutation p.M704V 0.20 tolerated(0.56) benign(0.001) TCGA-MX-A5UJ-01 3 154042020 154042020 G T DHX36 Silent p.I62I 0.18 TCGA-MX-A5UJ-01 3 160132293 160132293 A T SMC4 Missense_Mutation p.K420N 0.30 tolerated(0.06) benign(0.213) TCGA-MX-A5UJ-01 3 160803766 160803766 G A B3GALNT1 Silent p.H259H 0.21 TCGA-MX-A5UJ-01 3 164906924 164906924 G A SLITRK3 Silent p.D565D 0.20 TCGA-MX-A5UJ-01 3 170624844 170624844 T - EIF5A2 Frame_Shift_Del p.K68Nfs*24 0.20 TCGA-MX-A5UJ-01 3 180321044 180321044 G T TTC14 Missense_Mutation p.G140V 0.12 deleterious(0) probably_damaging(1) TCGA-MX-A5UJ-01 3 180685947 180685947 G A FXR1 Missense_Mutation p.R436H 0.17 deleterious(0.05) probably_damaging(0.912) TCGA-MX-A5UJ-01 3 182683528 182683528 G - DCUN1D1 Frame_Shift_Del p.S6Yfs*11 0.13 TCGA-MX-A5UJ-01 3 183900575 183900575 G A AP2M1 Silent p.S364S 0.16 TCGA-MX-A5UJ-01 3 184043088 184043088 A - EIF4G1 Frame_Shift_Del p.I972Sfs*127 0.10 TCGA-MX-A5UJ-01 3 186370456 186370456 C T FETUB 3'UTR 0.31 TCGA-MX-A5UJ-01 3 19492809 19492809 C T KCNH8 Missense_Mutation p.R580C 0.24 deleterious(0) probably_damaging(0.999) TCGA-MX-A5UJ-01 3 195595229 195595229 G A TNK2 Missense_Mutation p.P710L 0.31 tolerated_low_confidence(0.12) benign(0.414) TCGA-MX-A5UJ-01 3 196215512 196215512 T C RNF168 Missense_Mutation p.E115G 0.28 deleterious(0) possibly_damaging(0.694) TCGA-MX-A5UJ-01 3 197023218 197023218 T A DLG1 Silent p.I50I 0.21 TCGA-MX-A5UJ-01 3 197500306 197500306 G A FYTTD1 Missense_Mutation p.G177E 0.23 deleterious(0.02) possibly_damaging(0.907) TCGA-MX-A5UJ-01 3 21465454 21465454 C - ZNF385D Splice_Site p.X318_splice 0.20 TCGA-MX-A5UJ-01 3 24138719 24138719 G A LINC00691 RNA 0.28 TCGA-MX-A5UJ-01 3 25622140 25622140 G A RARB Missense_Mutation p.R238H 0.25 deleterious(0.02) possibly_damaging(0.659) TCGA-MX-A5UJ-01 3 3067876 3067876 C T CNTN4 Missense_Mutation p.S526L 0.12 tolerated(0.24) probably_damaging(0.982) TCGA-MX-A5UJ-01 3 3134028 3134028 T C IL5RA Missense_Mutation p.N292D 0.20 tolerated(0.06) benign(0.175) TCGA-MX-A5UJ-01 3 31871604 31871604 C T OSBPL10 Silent p.T219T 0.23 TCGA-MX-A5UJ-01 3 33194586 33194586 G A SUSD5 Missense_Mutation p.T513M 0.20 tolerated(0.05) possibly_damaging(0.891) TCGA-MX-A5UJ-01 3 38035083 38035083 C T VILL 5'UTR 0.22 TCGA-MX-A5UJ-01 3 38104179 38104179 A - DLEC1 Frame_Shift_Del p.N329Ifs*26 0.24 TCGA-MX-A5UJ-01 3 38181987 38181988 TG - MYD88 Frame_Shift_Del p.S207* 0.23 TCGA-MX-A5UJ-01 3 39108283 39108283 C T WDR48 Missense_Mutation p.A133V 0.23 tolerated(0.16) possibly_damaging(0.823) TCGA-MX-A5UJ-01 3 43618452 43618452 A G ANO10 Silent p.T298T 0.21 TCGA-MX-A5UJ-01 3 44906755 44906755 C T TMEM42 3'UTR 0.19 TCGA-MX-A5UJ-01 3 45135141 45135141 C T CDCP1 Missense_Mutation p.D419N 0.28 tolerated(0.21) benign(0.125) TCGA-MX-A5UJ-01 3 45837950 45837950 C A SLC6A20 5'UTR 0.18 TCGA-MX-A5UJ-01 3 46063400 46063400 A - XCR1 Frame_Shift_Del p.Y14Tfs*33 0.17 TCGA-MX-A5UJ-01 3 46245624 46245624 G A CCR1 Nonsense_Mutation p.Q61* 0.21 TCGA-MX-A5UJ-01 3 46560368 46560368 T - LRRC2 3'UTR 0.33 TCGA-MX-A5UJ-01 3 47449950 47449950 A G PTPN23 Missense_Mutation p.T434A 0.10 unknown(0) TCGA-MX-A5UJ-01 3 48451443 48451443 G T PLXNB1 Silent p.P1883P 0.11 TCGA-MX-A5UJ-01 3 48627680 48627681 CT - COL7A1 Frame_Shift_Del p.E672Gfs*67 0.25 TCGA-MX-A5UJ-01 3 49159634 49159634 A G LAMB2 Silent p.R1581R 0.26 TCGA-MX-A5UJ-01 3 49166718 49166718 G A LAMB2 Missense_Mutation p.R520C 0.19 deleterious(0) probably_damaging(0.973) TCGA-MX-A5UJ-01 3 49377392 49377392 G T USP4 Silent p.P22P 0.05 TCGA-MX-A5UJ-01 3 49736529 49736529 G A RNF123 Missense_Mutation p.R252H 0.26 tolerated(0.21) probably_damaging(0.983) TCGA-MX-A5UJ-01 3 50402903 50402903 C T CACNA2D2 Silent p.E1001E 0.21 TCGA-MX-A5UJ-01 3 51184022 51184022 G T DOCK3 Missense_Mutation p.R263S 0.27 tolerated(0.07) benign(0.05) TCGA-MX-A5UJ-01 3 51308301 51308301 C T DOCK3 Missense_Mutation p.T804I 0.13 tolerated(0.05) benign(0.432) TCGA-MX-A5UJ-01 3 51417604 51417604 C - DOCK3 Frame_Shift_Del p.P1852Qfs*45 0.37 TCGA-MX-A5UJ-01 3 52283736 52283737 AC - PPM1M Frame_Shift_Del p.D217Efs*12 0.20 TCGA-MX-A5UJ-01 3 58413867 58413867 A G PDHB Missense_Mutation p.V325A 0.16 deleterious(0) possibly_damaging(0.867) TCGA-MX-A5UJ-01 3 64139008 64139008 G A PRICKLE2 Nonsense_Mutation p.R213* 0.15 TCGA-MX-A5UJ-01 3 71821968 71821968 A - PROK2 Frame_Shift_Del p.F99Lfs*28 0.20 TCGA-MX-A5UJ-01 3 74548935 74548935 A G CNTN3 Silent p.G19G 0.10 TCGA-MX-A5UJ-01 3 8590374 8590374 C T LMCD1 Missense_Mutation p.R170C 0.18 deleterious(0) possibly_damaging(0.862) TCGA-MX-A5UJ-01 3 88040823 88040823 T - HTR1F Frame_Shift_Del p.F310Lfs*2 0.24 TCGA-MX-A5UJ-01 3 93782068 93782068 G - NSUN3 Intron 0.19 TCGA-MX-A5UJ-01 3 97686393 97686393 C - MINA Frame_Shift_Del p.P16Rfs*7 0.13 TCGA-MX-A5UJ-01 3 9798961 9798961 C - OGG1 Intron 0.17 TCGA-MX-A5UJ-01 3 98189198 98189198 G A OR5K1 Missense_Mutation p.V260I 0.21 tolerated(0.6) benign(0.002) TCGA-MX-A5UJ-01 3 98538142 98538143 - T DCBLD2 Frame_Shift_Ins p.A331Sfs*16 0.25 TCGA-MX-A5UJ-01 3 99569223 99569223 C T FILIP1L Missense_Mutation p.A433T 0.16 tolerated(0.09) possibly_damaging(0.79) TCGA-MX-A5UJ-01 4 102751218 102751218 A - BANK1 Frame_Shift_Del p.S110Vfs*2 0.18 TCGA-MX-A5UJ-01 4 103987654 103987654 A T SLC9B2 Missense_Mutation p.V34D 0.30 tolerated(0.35) benign(0.042) TCGA-MX-A5UJ-01 4 11401016 11401016 C T HS3ST1 Missense_Mutation p.R205H 0.29 tolerated(0.09) benign(0.006) TCGA-MX-A5UJ-01 4 114824638 114824639 - A ARSJ Frame_Shift_Ins p.G198Wfs*16 0.20 TCGA-MX-A5UJ-01 4 118005517 118005517 T - TRAM1L1 Frame_Shift_Del p.R345Efs*14 0.19 TCGA-MX-A5UJ-01 4 118005713 118005713 C T TRAM1L1 Silent p.S279S 0.11 TCGA-MX-A5UJ-01 4 120213686 120213686 T C USP53 Missense_Mutation p.S848P 0.10 tolerated_low_confidence(0.1) benign(0.048) TCGA-MX-A5UJ-01 4 122853851 122853851 C T TRPC3 Missense_Mutation p.V188M 0.19 deleterious(0.01) possibly_damaging(0.789) TCGA-MX-A5UJ-01 4 1231910 1231910 C T CTBP1 Intron 0.09 TCGA-MX-A5UJ-01 4 126336784 126336784 C A FAT4 Silent p.T2222T 0.21 TCGA-MX-A5UJ-01 4 126369709 126369709 T G FAT4 Missense_Mutation p.F2513C 0.17 probably_damaging(1) TCGA-MX-A5UJ-01 4 138442438 138442438 C T PCDH18 Silent p.Q1051Q 0.12 TCGA-MX-A5UJ-01 4 145636568 145636568 G A HHIP Missense_Mutation p.G555E 0.23 deleterious(0) probably_damaging(0.999) TCGA-MX-A5UJ-01 4 153249384 153249384 C T FBXW7 Missense_Mutation p.R465H 0.13 deleterious(0) probably_damaging(0.998) TCGA-MX-A5UJ-01 4 15518323 15518323 C A CC2D2A Missense_Mutation p.P365T 0.26 tolerated(0.13) possibly_damaging(0.462) TCGA-MX-A5UJ-01 4 15602915 15602915 C T CC2D2A Missense_Mutation p.A1577V 0.27 deleterious(0) benign(0.406) TCGA-MX-A5UJ-01 4 166418824 166418824 T - CPE 3'UTR 0.38 TCGA-MX-A5UJ-01 4 166964431 166964431 T C TLL1 Missense_Mutation p.C462R 0.25 deleterious(0) probably_damaging(0.929) TCGA-MX-A5UJ-01 4 166976266 166976266 A C TLL1 Missense_Mutation p.E521D 0.21 deleterious(0) probably_damaging(0.916) TCGA-MX-A5UJ-01 4 170641235 170641235 T - CLCN3 3'UTR 0.31 TCGA-MX-A5UJ-01 4 177056372 177056372 A G WDR17 Silent p.A428A 0.18 TCGA-MX-A5UJ-01 4 177084444 177084444 G A WDR17 Missense_Mutation p.C1021Y 0.19 tolerated(0.1) benign(0.13) TCGA-MX-A5UJ-01 4 1807569 1807569 G A FGFR3 Missense_Mutation p.D582N 0.20 tolerated(0.3) benign(0.071) TCGA-MX-A5UJ-01 4 1816168 1816168 C T LETM1 Missense_Mutation p.A735T 0.25 tolerated(0.15) unknown(0) TCGA-MX-A5UJ-01 4 183714673 183714673 C T TENM3 Missense_Mutation p.A2283V 0.23 deleterious(0) possibly_damaging(0.739) TCGA-MX-A5UJ-01 4 186423510 186423510 C T PDLIM3 Missense_Mutation p.A345T 0.26 deleterious(0) probably_damaging(1) TCGA-MX-A5UJ-01 4 186435431 186435431 G A PDLIM3 Nonsense_Mutation p.R131* 0.27 TCGA-MX-A5UJ-01 4 187178504 187178504 A - KLKB1 Frame_Shift_Del p.D572Mfs*11 0.17 TCGA-MX-A5UJ-01 4 187521418 187521418 C T FAT1 Missense_Mutation p.A3913T 0.23 benign(0.023) TCGA-MX-A5UJ-01 4 187630013 187630013 A G FAT1 Silent p.I323I 0.19 TCGA-MX-A5UJ-01 4 20535227 20535227 A G SLIT2 Missense_Mutation p.E574G 0.31 deleterious(0.02) probably_damaging(0.999) TCGA-MX-A5UJ-01 4 2062836 2062836 G A NAT8L Missense_Mutation p.C163Y 0.10 tolerated(0.05) possibly_damaging(0.653) TCGA-MX-A5UJ-01 4 2242634 2242634 T - HAUS3 Frame_Shift_Del p.I14Lfs*27 0.16 TCGA-MX-A5UJ-01 4 24801207 24801207 G A SOD3 Missense_Mutation p.E22K 0.27 tolerated(0.9) benign(0) TCGA-MX-A5UJ-01 4 2948228 2948228 C T NOP14 Missense_Mutation p.A516T 0.24 tolerated(0.39) benign(0.426) TCGA-MX-A5UJ-01 4 3319206 3319206 C T RGS12 Missense_Mutation p.R437W 0.15 deleterious(0) probably_damaging(0.999) TCGA-MX-A5UJ-01 4 343964 343964 C T ZNF141 Intron 0.18 TCGA-MX-A5UJ-01 4 3944404 3944404 A G FAM86EP RNA 0.22 TCGA-MX-A5UJ-01 4 40439824 40439824 C T RBM47 Missense_Mutation p.A363T 0.25 tolerated(0.4) benign(0.003) TCGA-MX-A5UJ-01 4 41652581 41652581 G A LIMCH1 Missense_Mutation p.E613K 0.22 tolerated(0.1) benign(0.075) TCGA-MX-A5UJ-01 4 4393208 4393208 G A NSG1 Missense_Mutation p.V46M 0.08 deleterious(0) probably_damaging(0.999) TCGA-MX-A5UJ-01 4 4419143 4419143 C T NSG1 Missense_Mutation p.A180V 0.17 deleterious_low_confidence(0.04) possibly_damaging(0.727) TCGA-MX-A5UJ-01 4 48082120 48082120 G A TXK Nonsense_Mutation p.Q328* 0.10 TCGA-MX-A5UJ-01 4 4864504 4864504 G A MSX1 Silent p.A182A 0.22 TCGA-MX-A5UJ-01 4 48852082 48852082 A G OCIAD1 Silent p.R120R 0.25 TCGA-MX-A5UJ-01 4 49005981 49005981 C T CWH43 Silent p.Y344Y 0.15 TCGA-MX-A5UJ-01 4 53579473 53579473 G C SNORA26 RNA 0.09 TCGA-MX-A5UJ-01 4 54011688 54011688 A G SCFD2 Missense_Mutation p.V458A 0.22 tolerated(0.51) benign(0.002) TCGA-MX-A5UJ-01 4 5527159 5527160 - A C4orf6 Frame_Shift_Ins p.N36Kfs*19 0.19 TCGA-MX-A5UJ-01 4 55980356 55980356 A G KDR Silent p.N245N 0.26 TCGA-MX-A5UJ-01 4 57333820 57333820 G - SRP72 Frame_Shift_Del p.V9Cfs*10 0.16 TCGA-MX-A5UJ-01 4 5827286 5827286 G T CRMP1 Missense_Mutation p.S635Y 0.29 deleterious(0) possibly_damaging(0.701) TCGA-MX-A5UJ-01 4 6863794 6863794 G T KIAA0232 Missense_Mutation p.G562V 0.05 deleterious(0) probably_damaging(1) TCGA-MX-A5UJ-01 4 6925582 6925582 G A TBC1D14 Missense_Mutation p.V156I 0.06 tolerated_low_confidence(0.2) benign(0.005) TCGA-MX-A5UJ-01 4 69973946 69973946 A G UGT2B7 Missense_Mutation p.M406V 0.17 tolerated(0.08) benign(0.015) TCGA-MX-A5UJ-01 4 70707770 70707770 T G SULT1E1 Missense_Mutation p.D276A 0.14 deleterious(0) possibly_damaging(0.746) TCGA-MX-A5UJ-01 4 73013277 73013277 C T NPFFR2 Silent p.N439N 0.15 TCGA-MX-A5UJ-01 4 73013327 73013327 A - NPFFR2 Frame_Shift_Del p.R458Efs*10 0.15 TCGA-MX-A5UJ-01 4 73963938 73963938 C G ANKRD17 Missense_Mutation p.E1625Q 0.24 benign(0.036) TCGA-MX-A5UJ-01 4 74354476 74354476 G A AFM Silent p.T281T 0.24 TCGA-MX-A5UJ-01 4 7684595 7684595 A - SORCS2 Frame_Shift_Del p.K490Nfs*83 0.16 TCGA-MX-A5UJ-01 4 77662468 77662468 C T SHROOM3 Missense_Mutation p.R1048C 0.22 tolerated(0.2) benign(0.013) TCGA-MX-A5UJ-01 4 77675852 77675852 G A SHROOM3 Missense_Mutation p.D1406N 0.18 tolerated(0.88) benign(0) TCGA-MX-A5UJ-01 4 81123234 81123234 C G PRDM8 Silent p.G206G 0.19 TCGA-MX-A5UJ-01 4 8271767 8271767 G A HTRA3 Silent p.P24P 0.27 TCGA-MX-A5UJ-01 4 83348625 83348625 T - HNRNPDL Frame_Shift_Del p.K289Nfs*3 0.17 TCGA-MX-A5UJ-01 4 83839022 83839023 - T THAP9 Frame_Shift_Ins p.V555Cfs*5 0.20 TCGA-MX-A5UJ-01 4 84374936 84374936 T C HELQ Missense_Mutation p.K154E 0.23 tolerated_low_confidence(0.31) benign(0.003) TCGA-MX-A5UJ-01 4 85750199 85750199 C T WDFY3 Missense_Mutation p.R305Q 0.18 deleterious(0.01) possibly_damaging(0.772) TCGA-MX-A5UJ-01 4 8583065 8583065 G A GPR78 Missense_Mutation p.R119Q 0.29 deleterious(0.02) probably_damaging(0.99) TCGA-MX-A5UJ-01 4 87080618 87080618 T C MAPK10 Silent p.G23G 0.28 TCGA-MX-A5UJ-01 4 88732888 88732888 G - IBSP Frame_Shift_Del p.E262Sfs*? 0.21 TCGA-MX-A5UJ-01 4 91389426 91389426 G A CCSER1 Missense_Mutation p.A549T 0.20 tolerated(0.17) probably_damaging(0.977) TCGA-MX-A5UJ-01 4 9784458 9784458 G A DRD5 Missense_Mutation p.A269T 0.15 deleterious(0.04) possibly_damaging(0.532) TCGA-MX-A5UJ-01 4 994718 994718 A G IDUA Missense_Mutation p.D145G 0.17 deleterious(0.01) probably_damaging(0.989) TCGA-MX-A5UJ-01 5 1036427 1036427 G A NKD2 Missense_Mutation p.E239K 0.29 deleterious(0) possibly_damaging(0.858) TCGA-MX-A5UJ-01 5 10387155 10387155 G A MARCH6 Silent p.T128T 0.21 TCGA-MX-A5UJ-01 5 10402655 10402655 T C MARCH6 Missense_Mutation p.L378S 0.16 deleterious(0) probably_damaging(0.999) TCGA-MX-A5UJ-01 5 1076272 1076272 G A SLC12A7 Missense_Mutation p.R610C 0.18 deleterious(0) probably_damaging(0.994) TCGA-MX-A5UJ-01 5 110843028 110843028 G A STARD4 Missense_Mutation p.T35M 0.17 tolerated(0.22) benign(0.051) TCGA-MX-A5UJ-01 5 112420983 112420983 G A MCC Nonsense_Mutation p.Q475* 0.21 TCGA-MX-A5UJ-01 5 112720764 112720764 T C MCC Missense_Mutation p.K106E 0.23 tolerated_low_confidence(0.12) benign(0.051) TCGA-MX-A5UJ-01 5 115327828 115327828 G T AQPEP Missense_Mutation p.A372S 0.17 deleterious(0.01) probably_damaging(0.994) TCGA-MX-A5UJ-01 5 11565071 11565071 C T CTNND2 Missense_Mutation p.S91N 0.23 deleterious(0.01) benign(0.093) TCGA-MX-A5UJ-01 5 121411177 121411178 - G LOX Frame_Shift_Ins p.Q267Pfs*34 0.18 TCGA-MX-A5UJ-01 5 122272428 122272428 G A SNX24 Splice_Site p.X21_splice 0.11 TCGA-MX-A5UJ-01 5 122926250 122926250 T C CSNK1G3 Silent p.L330L 0.23 TCGA-MX-A5UJ-01 5 122941058 122941058 T C CSNK1G3 Splice_Site p.X438_splice 0.22 TCGA-MX-A5UJ-01 5 126145904 126145904 G A LMNB1 Silent p.T225T 0.27 TCGA-MX-A5UJ-01 5 127873289 127873289 C A FBN2 Missense_Mutation p.R3I 0.24 deleterious_low_confidence(0.01) unknown(0) TCGA-MX-A5UJ-01 5 128326065 128326065 G A SLC27A6 Missense_Mutation p.A293T 0.21 deleterious(0.01) probably_damaging(0.986) TCGA-MX-A5UJ-01 5 1294215 1294215 C T TERT Silent p.T262T 0.18 TCGA-MX-A5UJ-01 5 1294686 1294686 G A TERT Silent p.D105D 0.17 TCGA-MX-A5UJ-01 5 132227943 132227943 C T AFF4 Silent p.E850E 0.24 TCGA-MX-A5UJ-01 5 132736552 132736552 C T FSTL4 Missense_Mutation p.S96N 0.23 tolerated(0.21) possibly_damaging(0.493) TCGA-MX-A5UJ-01 5 132763394 132763394 C T FSTL4 Intron 0.22 TCGA-MX-A5UJ-01 5 135229823 135229823 T C IL9 Silent p.P67P 0.22 TCGA-MX-A5UJ-01 5 13766156 13766156 T - DNAH5 Frame_Shift_Del p.S3344Afs*11 0.21 TCGA-MX-A5UJ-01 5 137803327 137803327 G A EGR1 Missense_Mutation p.A397T 0.20 deleterious(0.02) unknown(0) TCGA-MX-A5UJ-01 5 138160240 138160240 C T CTNNA1 Missense_Mutation p.R204C 0.15 deleterious(0.03) probably_damaging(0.913) TCGA-MX-A5UJ-01 5 13864742 13864742 G A DNAH5 Nonsense_Mutation p.R1454* 0.14 TCGA-MX-A5UJ-01 5 138723295 138723295 C T MZB1 3'UTR 0.38 TCGA-MX-A5UJ-01 5 140167229 140167229 G A PCDHA1 Missense_Mutation p.A452T 0.22 deleterious_low_confidence(0.02) possibly_damaging(0.503) TCGA-MX-A5UJ-01 5 140180965 140180965 G A PCDHA3 Silent p.P61P 0.26 TCGA-MX-A5UJ-01 5 140202785 140202785 G A PCDHA5 Silent p.T475T 0.20 TCGA-MX-A5UJ-01 5 140214150 140214150 C T PCDHA7 Missense_Mutation p.P61L 0.22 deleterious_low_confidence(0) possibly_damaging(0.818) TCGA-MX-A5UJ-01 5 140230196 140230196 G A PCDHA9 Missense_Mutation p.A706T 0.13 deleterious_low_confidence(0.05) benign(0.012) TCGA-MX-A5UJ-01 5 140250403 140250403 C T PCDHA11 Missense_Mutation p.A572V 0.23 tolerated_low_confidence(0.2) benign(0.009) TCGA-MX-A5UJ-01 5 140263126 140263126 G A PCDHA13 Missense_Mutation p.V425M 0.20 deleterious_low_confidence(0.03) probably_damaging(0.995) TCGA-MX-A5UJ-01 5 140306566 140306566 C T PCDHAC1 Missense_Mutation p.T30M 0.17 tolerated(0.06) benign(0.2) TCGA-MX-A5UJ-01 5 140481822 140481822 G A PCDHB3 Missense_Mutation p.R530H 0.18 tolerated_low_confidence(0.25) benign(0.003) TCGA-MX-A5UJ-01 5 140530844 140530844 C A PCDHB6 Missense_Mutation p.L336M 0.13 tolerated(0.68) benign(0.021) TCGA-MX-A5UJ-01 5 140574069 140574069 C T PCDHB10 Silent p.G648G 0.09 TCGA-MX-A5UJ-01 5 140574284 140574284 G T PCDHB10 Missense_Mutation p.R720M 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.501) TCGA-MX-A5UJ-01 5 140581035 140581035 A G PCDHB11 Missense_Mutation p.Y563C 0.09 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-MX-A5UJ-01 5 140698938 140698938 T G TAF7 Missense_Mutation p.D225A 0.20 deleterious(0.01) possibly_damaging(0.662) TCGA-MX-A5UJ-01 5 140725049 140725050 - A PCDHGA3 Frame_Shift_Ins p.N484Kfs*43 0.18 TCGA-MX-A5UJ-01 5 140744572 140744572 C T PCDHGA5 Silent p.T225T 0.21 TCGA-MX-A5UJ-01 5 140749959 140749959 G A PCDHGB3 5'UTR 0.29 TCGA-MX-A5UJ-01 5 140763804 140763804 C T PCDHGA7 Silent p.N446N 0.13 TCGA-MX-A5UJ-01 5 140764094 140764094 G T PCDHGA7 Missense_Mutation p.S543I 0.20 deleterious_low_confidence(0) probably_damaging(0.967) TCGA-MX-A5UJ-01 5 140810583 140810583 C T PCDHGA12 Missense_Mutation p.T86M 0.22 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-MX-A5UJ-01 5 141051462 141051462 C A ARAP3 Missense_Mutation p.Q557H 0.19 deleterious(0) probably_damaging(1) TCGA-MX-A5UJ-01 5 14280525 14280525 C A TRIO Silent p.S109S 0.18 TCGA-MX-A5UJ-01 5 14381308 14381308 C T TRIO Nonsense_Mutation p.Q1173* 0.15 TCGA-MX-A5UJ-01 5 14488156 14488156 C - TRIO Frame_Shift_Del p.S2476Afs*51 0.22 TCGA-MX-A5UJ-01 5 145719620 145719620 G A POU4F3 Silent p.A210A 0.23 TCGA-MX-A5UJ-01 5 145894834 145894834 C T GPR151 Silent p.P281P 0.25 TCGA-MX-A5UJ-01 5 149786868 149786868 G T CD74 Missense_Mutation p.L49M 0.24 tolerated(0.08) benign(0.141) TCGA-MX-A5UJ-01 5 150901208 150901208 C T FAT2 Missense_Mutation p.R3649Q 0.24 probably_damaging(0.999) TCGA-MX-A5UJ-01 5 150924878 150924878 C T FAT2 Missense_Mutation p.R1937Q 0.20 benign(0.01) TCGA-MX-A5UJ-01 5 154173546 154173546 G - LARP1 Frame_Shift_Del p.G276Vfs*28 0.16 TCGA-MX-A5UJ-01 5 154393631 154393631 C T KIF4B Missense_Mutation p.P71L 0.28 deleterious(0.04) benign(0.329) TCGA-MX-A5UJ-01 5 156731361 156731362 AT - CYFIP2 Frame_Shift_Del p.M236Afs*18 0.20 TCGA-MX-A5UJ-01 5 156819902 156819902 C T CYFIP2 Missense_Mutation p.A1193V 0.18 tolerated(0.09) benign(0.141) TCGA-MX-A5UJ-01 5 156819995 156819995 C T CYFIP2 Missense_Mutation p.A1224V 0.18 deleterious(0.01) benign(0.059) TCGA-MX-A5UJ-01 5 159656510 159656510 A G FABP6 Intron 0.17 TCGA-MX-A5UJ-01 5 159680469 159680469 C T CCNJL Silent p.E408E 0.17 TCGA-MX-A5UJ-01 5 170239071 170239071 G A GABRP Missense_Mutation p.V378I 0.22 tolerated(0.55) benign(0.002) TCGA-MX-A5UJ-01 5 170863239 170863239 G A FGF18 Missense_Mutation p.R71H 0.18 deleterious(0.03) probably_damaging(0.983) TCGA-MX-A5UJ-01 5 176025071 176025072 - C GPRIN1 Frame_Shift_Ins p.K589Efs*157 0.23 TCGA-MX-A5UJ-01 5 176078840 176078840 C T TSPAN17 Missense_Mutation p.S75L 0.22 deleterious(0.05) benign(0.003) TCGA-MX-A5UJ-01 5 178416051 178416051 G A GRM6 Silent p.H413H 0.19 TCGA-MX-A5UJ-01 5 179545670 179545670 T C RASGEF1C Missense_Mutation p.Y341C 0.25 deleterious(0) probably_damaging(0.94) TCGA-MX-A5UJ-01 5 180374673 180374673 G A BTNL8 Intron 0.20 TCGA-MX-A5UJ-01 5 180582210 180582210 A G OR2V2 Missense_Mutation p.R90G 0.19 tolerated(0.14) benign(0.097) TCGA-MX-A5UJ-01 5 22078617 22078617 C T CDH12 Missense_Mutation p.V57I 0.21 tolerated(0.11) benign(0.242) TCGA-MX-A5UJ-01 5 24537693 24537693 T - CDH10 Frame_Shift_Del p.T108Qfs*30 0.13 TCGA-MX-A5UJ-01 5 31526494 31526494 A G DROSHA Silent p.F182F 0.13 TCGA-MX-A5UJ-01 5 32071517 32071518 - A PDZD2 Frame_Shift_Ins p.D857Gfs*6 0.19 TCGA-MX-A5UJ-01 5 33448677 33448677 C T TARS Missense_Mutation p.R57C 0.19 deleterious(0) probably_damaging(0.997) TCGA-MX-A5UJ-01 5 353858 353858 G T AHRR Missense_Mutation p.G30W 0.11 deleterious(0) probably_damaging(0.999) TCGA-MX-A5UJ-01 5 3599821 3599821 C T IRX1 Silent p.H253H 0.14 TCGA-MX-A5UJ-01 5 36035763 36035763 G A UGT3A2 3'UTR 0.22 TCGA-MX-A5UJ-01 5 37065070 37065070 A - NIPBL 3'UTR 0.41 TCGA-MX-A5UJ-01 5 37180204 37180204 T - C5orf42 Frame_Shift_Del p.E1885Nfs*3 0.16 TCGA-MX-A5UJ-01 5 38945793 38945793 T - RICTOR Frame_Shift_Del p.N1478Ifs*10 0.17 TCGA-MX-A5UJ-01 5 38959950 38959950 A - RICTOR Frame_Shift_Del p.L661Yfs*31 0.23 TCGA-MX-A5UJ-01 5 38981989 38981989 G A RICTOR Nonsense_Mutation p.R245* 0.16 TCGA-MX-A5UJ-01 5 427974 427974 C T AHRR Missense_Mutation p.A276V 0.23 deleterious(0.02) possibly_damaging(0.778) TCGA-MX-A5UJ-01 5 53815285 53815285 C T SNX18 Silent p.D501D 0.26 TCGA-MX-A5UJ-01 5 5463579 5463579 A G KIAA0947 Missense_Mutation p.M1378V 0.15 tolerated(0.38) benign(0) TCGA-MX-A5UJ-01 5 55094298 55094298 T C DDX4 Missense_Mutation p.V505A 0.26 deleterious(0) possibly_damaging(0.893) TCGA-MX-A5UJ-01 5 55237472 55237472 G A IL6ST Missense_Mutation p.S732L 0.07 deleterious(0) probably_damaging(0.999) TCGA-MX-A5UJ-01 5 64905260 64905260 C T TRIM23 Missense_Mutation p.R285Q 0.14 deleterious(0.01) probably_damaging(0.994) TCGA-MX-A5UJ-01 5 66440594 66440594 C T MAST4 Missense_Mutation p.T943I 0.30 possibly_damaging(0.467) TCGA-MX-A5UJ-01 5 67584576 67584576 C T PIK3R1 Intron 0.10 TCGA-MX-A5UJ-01 5 68660803 68660803 G A TAF9 Silent p.D254D 0.24 TCGA-MX-A5UJ-01 5 71494154 71494154 C A MAP1B Missense_Mutation p.L1658I 0.21 probably_damaging(0.996) TCGA-MX-A5UJ-01 5 71756036 71756036 A G ZNF366 Missense_Mutation p.F430L 0.23 deleterious(0) probably_damaging(0.99) TCGA-MX-A5UJ-01 5 72419520 72419520 G A TMEM171 Missense_Mutation p.R107H 0.20 tolerated(0.06) probably_damaging(1) TCGA-MX-A5UJ-01 5 72470108 72470108 A G TMEM174 3'UTR 0.25 TCGA-MX-A5UJ-01 5 76376329 76376329 C T ZBED3 Intron 0.08 TCGA-MX-A5UJ-01 5 78359538 78359538 G A DMGDH Silent p.G58G 0.21 TCGA-MX-A5UJ-01 5 79033022 79033022 C A CMYA5 Missense_Mutation p.L2812M 0.21 possibly_damaging(0.854) TCGA-MX-A5UJ-01 5 79058947 79058947 C T CMYA5 Nonsense_Mutation p.R3824* 0.24 TCGA-MX-A5UJ-01 5 80088584 80088585 - A MSH3 Frame_Shift_Ins p.N861Kfs*8 0.29 TCGA-MX-A5UJ-01 5 80600751 80600751 A - ZCCHC9 Frame_Shift_Del p.K60Rfs*9 0.26 TCGA-MX-A5UJ-01 5 82808007 82808007 A G VCAN Silent p.A278A 0.15 TCGA-MX-A5UJ-01 5 82808055 82808055 C T VCAN Silent p.C294C 0.16 TCGA-MX-A5UJ-01 5 89701581 89701581 T - CETN3 Frame_Shift_Del p.A64Lfs*4 0.22 TCGA-MX-A5UJ-01 5 92923699 92923699 C T NR2F1 Silent p.N180N 0.09 TCGA-MX-A5UJ-01 5 94772542 94772542 T C FAM81B Silent p.P275P 0.20 TCGA-MX-A5UJ-01 5 95116041 95116042 AA - RHOBTB3 Frame_Shift_Del p.K457Efs*54 0.20 TCGA-MX-A5UJ-01 5 95735793 95735793 C A PCSK1 Missense_Mutation p.G432C 0.14 deleterious(0) probably_damaging(0.932) TCGA-MX-A5UJ-01 5 98236745 98236745 T - CHD1 Frame_Shift_Del p.K210Rfs*39 0.23 TCGA-MX-A5UJ-01 6 100896434 100896434 C T SIM1 Missense_Mutation p.V222I 0.08 tolerated(1) benign(0.016) TCGA-MX-A5UJ-01 6 101127558 101127558 T - ASCC3 Frame_Shift_Del p.N741Ifs*53 0.18 TCGA-MX-A5UJ-01 6 10415184 10415184 T G TFAP2A Missense_Mutation p.E12A 0.20 deleterious(0) benign(0.014) TCGA-MX-A5UJ-01 6 107390524 107390524 C T BEND3 Missense_Mutation p.R624H 0.21 deleterious(0.02) probably_damaging(0.999) TCGA-MX-A5UJ-01 6 108225903 108225904 - T SEC63 Frame_Shift_Ins p.C329Vfs*10 0.18 TCGA-MX-A5UJ-01 6 108882982 108882982 G A FOXO3 Missense_Mutation p.V191M 0.22 deleterious(0) probably_damaging(0.995) TCGA-MX-A5UJ-01 6 109770679 109770679 T G MICAL1 Silent p.R480R 0.12 TCGA-MX-A5UJ-01 6 111587419 111587419 T C KIAA1919 Silent p.A218A 0.31 TCGA-MX-A5UJ-01 6 112486362 112486362 C G LAMA4 Missense_Mutation p.K556N 0.17 deleterious(0.01) benign(0.394) TCGA-MX-A5UJ-01 6 116442817 116442817 C T COL10A1 Silent p.V154V 0.24 TCGA-MX-A5UJ-01 6 116560165 116560165 T - NT5DC1 Frame_Shift_Del p.F379Lfs*74 0.11 TCGA-MX-A5UJ-01 6 117237372 117237372 T - RFX6 Frame_Shift_Del p.L291Yfs*53 0.23 TCGA-MX-A5UJ-01 6 124125339 124125339 G A NKAIN2 5'UTR 0.22 TCGA-MX-A5UJ-01 6 127796446 127796446 C T SOGA3 Missense_Mutation p.V909M 0.12 deleterious_low_confidence(0.01) benign(0.078) TCGA-MX-A5UJ-01 6 128040862 128040862 C A THEMIS Missense_Mutation p.R661M 0.16 deleterious_low_confidence(0) possibly_damaging(0.568) TCGA-MX-A5UJ-01 6 128298086 128298086 G A PTPRK Silent p.N1281N 0.24 TCGA-MX-A5UJ-01 6 130535492 130535492 C T SAMD3 Missense_Mutation p.A87T 0.22 tolerated_low_confidence(0.2) benign(0.01) TCGA-MX-A5UJ-01 6 132004249 132004249 T C ENPP3 Missense_Mutation p.L356P 0.20 deleterious(0) probably_damaging(1) TCGA-MX-A5UJ-01 6 132643997 132643997 C T MOXD1 Missense_Mutation p.E376K 0.29 deleterious(0.05) probably_damaging(1) TCGA-MX-A5UJ-01 6 135644405 135644405 C T AHI1 Missense_Mutation p.G1075R 0.17 deleterious(0.03) probably_damaging(1) TCGA-MX-A5UJ-01 6 138584543 138584543 G A KIAA1244 Silent p.E641E 0.27 TCGA-MX-A5UJ-01 6 138619777 138619777 A C KIAA1244 Missense_Mutation p.K1228T 0.35 deleterious(0.01) probably_damaging(0.998) TCGA-MX-A5UJ-01 6 139487988 139487988 T G HECA Missense_Mutation p.L280R 0.11 tolerated(0.29) possibly_damaging(0.483) TCGA-MX-A5UJ-01 6 142725013 142725013 G A GPR126 Missense_Mutation p.R677Q 0.21 tolerated(0.25) benign(0.008) TCGA-MX-A5UJ-01 6 144184235 144184235 C T LTV1 Nonsense_Mutation p.R377* 0.11 TCGA-MX-A5UJ-01 6 151054882 151054882 G A PLEKHG1 Missense_Mutation p.R22H 0.17 deleterious(0) probably_damaging(0.999) TCGA-MX-A5UJ-01 6 151281486 151281486 G A MTHFD1L Missense_Mutation p.A627T 0.39 deleterious(0.03) benign(0.004) TCGA-MX-A5UJ-01 6 152614845 152614845 G A SYNE1 Missense_Mutation p.R5964C 0.28 probably_damaging(0.987) TCGA-MX-A5UJ-01 6 152652706 152652706 T C SYNE1 Missense_Mutation p.K4372E 0.17 benign(0.101) TCGA-MX-A5UJ-01 6 155764413 155764413 G A NOX3 Silent p.F160F 0.19 TCGA-MX-A5UJ-01 6 158505106 158505106 C T SYNJ2 Silent p.L1036L 0.21 TCGA-MX-A5UJ-01 6 158870165 158870165 C T TULP4 Silent p.S227S 0.22 TCGA-MX-A5UJ-01 6 159058854 159058856 CTA - DYNLT1 In_Frame_Del p.V47del 0.21 TCGA-MX-A5UJ-01 6 159457405 159457405 G A TAGAP Silent p.A550A 0.21 TCGA-MX-A5UJ-01 6 161137727 161137727 A G PLG Missense_Mutation p.E240G 0.29 deleterious(0) benign(0.377) TCGA-MX-A5UJ-01 6 161771164 161771164 G A PARK2 Silent p.R455R 0.07 TCGA-MX-A5UJ-01 6 161807880 161807880 C T PARK2 Silent p.A371A 0.08 TCGA-MX-A5UJ-01 6 163483223 163483224 - T PACRG Frame_Shift_Ins p.D114* 0.13 TCGA-MX-A5UJ-01 6 167417716 167417716 T - FGFR1OP Intron 0.32 TCGA-MX-A5UJ-01 6 167705026 167705026 C T UNC93A Missense_Mutation p.L17F 0.25 tolerated(0.31) benign(0.172) TCGA-MX-A5UJ-01 6 167754367 167754367 T - TTLL2 Frame_Shift_Del p.S329Pfs*47 0.13 TCGA-MX-A5UJ-01 6 168445554 168445554 A G KIF25 Missense_Mutation p.R345G 0.21 deleterious(0.04) benign(0.118) TCGA-MX-A5UJ-01 6 24146248 24146250 AAG - NRSN1 3'UTR 0.23 TCGA-MX-A5UJ-01 6 26108110 26108110 G C HIST1H1T Missense_Mutation p.A71G 0.20 deleterious(0.01) possibly_damaging(0.803) TCGA-MX-A5UJ-01 6 26252092 26252092 G C HIST1H2BH Missense_Mutation p.E72Q 0.15 deleterious_low_confidence(0.02) benign(0.334) TCGA-MX-A5UJ-01 6 2893766 2893766 G A SERPINB9 Missense_Mutation p.P149L 0.26 tolerated(0.09) possibly_damaging(0.605) TCGA-MX-A5UJ-01 6 31323362 31323363 - G HLA-B Frame_Shift_Ins p.T211Dfs*10 0.14 TCGA-MX-A5UJ-01 6 31548543 31548543 G A LTB Silent p.P226P 0.34 TCGA-MX-A5UJ-01 6 31600240 31600240 C T PRRC2A Missense_Mutation p.R1264W 0.15 unknown(0) TCGA-MX-A5UJ-01 6 31726367 31726367 C A MSH5 Missense_Mutation p.L396I 0.12 deleterious(0.03) benign(0.32) TCGA-MX-A5UJ-01 6 31765402 31765402 A - LSM2 3'UTR 0.20 TCGA-MX-A5UJ-01 6 31832446 31832446 G A SLC44A4 Missense_Mutation p.T665M 0.15 deleterious(0) probably_damaging(1) TCGA-MX-A5UJ-01 6 32026100 32026100 G - TNXB Frame_Shift_Del p.E2521Rfs*8 0.17 TCGA-MX-A5UJ-01 6 32039875 32039875 G A TNXB Missense_Mutation p.R1628W 0.23 probably_damaging(0.997) TCGA-MX-A5UJ-01 6 32063932 32063932 G A TNXB Silent p.R566R 0.21 TCGA-MX-A5UJ-01 6 33236965 33236965 C T VPS52 Missense_Mutation p.R125Q 0.25 tolerated(0.12) possibly_damaging(0.545) TCGA-MX-A5UJ-01 6 33288873 33288873 G A DAXX Missense_Mutation p.R227W 0.24 deleterious(0) probably_damaging(0.987) TCGA-MX-A5UJ-01 6 33405679 33405679 A - SYNGAP1 Frame_Shift_Del p.K334Sfs*13 0.19 TCGA-MX-A5UJ-01 6 33740359 33740359 G A LEMD2 3'UTR 0.15 TCGA-MX-A5UJ-01 6 34026814 34026814 G A GRM4 Silent p.L322L 0.19 TCGA-MX-A5UJ-01 6 35088325 35088325 C T TCP11 Missense_Mutation p.A285T 0.26 tolerated(0.16) benign(0.05) TCGA-MX-A5UJ-01 6 35443790 35443790 C T TEAD3 Missense_Mutation p.R269H 0.15 tolerated(0.06) benign(0.424) TCGA-MX-A5UJ-01 6 35543606 35543606 G A FKBP5 3'UTR 0.23 TCGA-MX-A5UJ-01 6 35716490 35716490 G A ARMC12 Missense_Mutation p.R316Q 0.26 tolerated(0.51) probably_damaging(0.964) TCGA-MX-A5UJ-01 6 37186304 37186304 C T TMEM217 Missense_Mutation p.R168Q 0.19 deleterious(0.01) probably_damaging(0.974) TCGA-MX-A5UJ-01 6 38160322 38160322 G A BTBD9 Silent p.I538I 0.14 TCGA-MX-A5UJ-01 6 38565837 38565837 C T BTBD9 Missense_Mutation p.A12T 0.07 tolerated(0.25) unknown(0) TCGA-MX-A5UJ-01 6 398832 398832 C T IRF4 Silent p.C214C 0.11 TCGA-MX-A5UJ-01 6 4069980 4069980 A - FAM217A Frame_Shift_Del p.F159Lfs*15 0.27 TCGA-MX-A5UJ-01 6 40998403 40998403 G - UNC5CL Frame_Shift_Del p.P404Hfs*39 0.19 TCGA-MX-A5UJ-01 6 41127579 41127579 C T TREM2 Missense_Mutation p.G145R 0.14 tolerated(0.05) benign(0.058) TCGA-MX-A5UJ-01 6 43033372 43033372 C T KLC4 Silent p.G186G 0.25 TCGA-MX-A5UJ-01 6 43038170 43038170 C T KLC4 Missense_Mutation p.R338W 0.20 deleterious(0.01) probably_damaging(0.995) TCGA-MX-A5UJ-01 6 43143531 43143531 C T SRF Nonsense_Mutation p.Q290* 0.28 TCGA-MX-A5UJ-01 6 43153719 43153719 G A CUL9 Silent p.L259L 0.26 TCGA-MX-A5UJ-01 6 43305585 43305585 G A ZNF318 Missense_Mutation p.P2051S 0.24 benign(0.015) TCGA-MX-A5UJ-01 6 43413620 43413620 G A ABCC10 Missense_Mutation p.S1105N 0.25 deleterious(0.05) benign(0.16) TCGA-MX-A5UJ-01 6 43483693 43483693 C A YIPF3 Missense_Mutation p.E74D 0.14 tolerated(0.63) benign(0.15) TCGA-MX-A5UJ-01 6 46111164 46111164 T C ENPP4 Silent p.H383H 0.24 TCGA-MX-A5UJ-01 6 46190802 46190802 A - RCAN2 3'UTR 0.16 TCGA-MX-A5UJ-01 6 46979907 46979907 C T GPR110 Missense_Mutation p.A318T 0.24 tolerated(0.38) benign(0.025) TCGA-MX-A5UJ-01 6 48036112 48036112 G - PTCHD4 Frame_Shift_Del p.L94Wfs*21 0.17 TCGA-MX-A5UJ-01 6 52268754 52268754 A C PAQR8 Missense_Mutation p.H248P 0.23 deleterious(0) probably_damaging(1) TCGA-MX-A5UJ-01 6 53519206 53519206 C T KLHL31 Missense_Mutation p.V289I 0.21 tolerated(0.19) probably_damaging(0.994) TCGA-MX-A5UJ-01 6 53660207 53660207 G A LRRC1 Silent p.L51L 0.22 TCGA-MX-A5UJ-01 6 55925689 55925689 G A COL21A1 Silent p.P784P 0.22 TCGA-MX-A5UJ-01 6 56484643 56484643 T - DST Intron 0.18 TCGA-MX-A5UJ-01 6 64415953 64415953 A - PHF3 Frame_Shift_Del p.V1137* 0.15 TCGA-MX-A5UJ-01 6 64421175 64421175 T C PHF3 Missense_Mutation p.M1305T 0.22 deleterious(0.02) probably_damaging(0.983) TCGA-MX-A5UJ-01 6 70840095 70840095 G A COL19A1 Missense_Mutation p.G455R 0.24 tolerated(0.53) benign(0.021) TCGA-MX-A5UJ-01 6 71245977 71245977 C T FAM135A Missense_Mutation p.S1327L 0.08 deleterious(0) probably_damaging(0.993) TCGA-MX-A5UJ-01 6 73879466 73879466 C T KCNQ5 Intron 0.17 TCGA-MX-A5UJ-01 6 74072894 74072894 C T KHDC3L Silent p.N82N 0.18 TCGA-MX-A5UJ-01 6 74078982 74078982 A G OOEP Missense_Mutation p.V106A 0.18 deleterious(0.01) possibly_damaging(0.588) TCGA-MX-A5UJ-01 6 75855072 75855072 T C COL12A1 Missense_Mutation p.S1554G 0.25 benign(0.029) TCGA-MX-A5UJ-01 6 79607813 79607813 C T IRAK1BP1 Missense_Mutation p.A182V 0.28 deleterious(0) probably_damaging(0.997) TCGA-MX-A5UJ-01 6 83667136 83667136 G C UBE3D Silent p.V348V 0.23 TCGA-MX-A5UJ-01 6 84865099 84865099 T - KIAA1009 Frame_Shift_Del p.K971Sfs*2 0.19 TCGA-MX-A5UJ-01 6 90572377 90572377 C T CASP8AP2 RNA 0.19 TCGA-MX-A5UJ-01 6 90642584 90642586 GAC - BACH2 In_Frame_Del p.S690del 0.29 TCGA-MX-A5UJ-01 6 99282728 99282728 G A POU3F2 5'UTR 0.20 TCGA-MX-A5UJ-01 6 99824049 99824049 G A COQ3 Missense_Mutation p.R166W 0.27 deleterious(0) probably_damaging(1) TCGA-MX-A5UJ-01 7 100087052 100087052 G - NYAP1 Frame_Shift_Del p.V572Cfs*2 0.24 TCGA-MX-A5UJ-01 7 100192728 100192729 - G FBXO24 Frame_Shift_Ins p.V360Sfs*4 0.12 TCGA-MX-A5UJ-01 7 100212648 100212648 G A MOSPD3 Missense_Mutation p.V224I 0.25 tolerated(0.22) benign(0.009) TCGA-MX-A5UJ-01 7 100361705 100361705 A G ZAN Missense_Mutation p.M1385V 0.18 unknown(0) TCGA-MX-A5UJ-01 7 100479717 100479717 G A SRRT Missense_Mutation p.V148M 0.19 tolerated(0.4) possibly_damaging(0.615) TCGA-MX-A5UJ-01 7 103393639 103393639 G A RELN Silent p.H189H 0.20 TCGA-MX-A5UJ-01 7 105669010 105669011 AG - CDHR3 Frame_Shift_Del p.D765Rfs*13 0.17 TCGA-MX-A5UJ-01 7 107393922 107393922 G A CBLL1 Missense_Mutation p.R83Q 0.18 tolerated(0.21) benign(0.006) TCGA-MX-A5UJ-01 7 107638926 107638926 T - LAMB1 Frame_Shift_Del p.K75Nfs*15 0.29 TCGA-MX-A5UJ-01 7 107688477 107688477 C A LAMB4 Missense_Mutation p.R1401M 0.06 deleterious(0.04) benign(0.112) TCGA-MX-A5UJ-01 7 107832204 107832204 G A NRCAM Silent p.S624S 0.15 TCGA-MX-A5UJ-01 7 108204998 108204998 A - THAP5 Frame_Shift_Del p.F275Lfs*37 0.18 TCGA-MX-A5UJ-01 7 111368681 111368681 C T DOCK4 Silent p.G1850G 0.22 TCGA-MX-A5UJ-01 7 124387219 124387219 C T GPR37 Missense_Mutation p.R401H 0.22 tolerated(0.46) possibly_damaging(0.595) TCGA-MX-A5UJ-01 7 127013667 127013667 T - ZNF800 Frame_Shift_Del p.R575Efs*28 0.20 TCGA-MX-A5UJ-01 7 127222640 127222640 G A GCC1 Missense_Mutation p.H586Y 0.26 deleterious(0) possibly_damaging(0.664) TCGA-MX-A5UJ-01 7 128588125 128588125 T C IRF5 Missense_Mutation p.I377T 0.20 deleterious(0.01) possibly_damaging(0.641) TCGA-MX-A5UJ-01 7 129815400 129815400 G A TMEM209 Silent p.G432G 0.25 TCGA-MX-A5UJ-01 7 137237139 137237141 CTC - DGKI In_Frame_Del p.R708del 0.13 TCGA-MX-A5UJ-01 7 137269976 137269978 TTC - DGKI In_Frame_Del p.E514del 0.12 TCGA-MX-A5UJ-01 7 140476857 140476857 T C BRAF Missense_Mutation p.M517V 0.19 deleterious(0) probably_damaging(0.997) TCGA-MX-A5UJ-01 7 142334730 142334730 G A TRBV20-1 Missense_Mutation p.R51H 0.15 tolerated(0.21) benign(0.01) TCGA-MX-A5UJ-01 7 142640876 142640877 - G KEL Frame_Shift_Ins p.Q529Pfs*19 0.11 TCGA-MX-A5UJ-01 7 148454074 148454074 G T CUL1 Splice_Site p.X106_splice 0.16 TCGA-MX-A5UJ-01 7 150390073 150390073 T C GIMAP2 Silent p.D233D 0.17 TCGA-MX-A5UJ-01 7 150730959 150730959 G A ABCB8 Nonsense_Mutation p.W121* 0.19 TCGA-MX-A5UJ-01 7 150772569 150772569 C T SLC4A2 Missense_Mutation p.T1092M 0.15 deleterious(0) probably_damaging(1) TCGA-MX-A5UJ-01 7 150774993 150774993 A - FASTK Frame_Shift_Del p.S338Pfs*15 0.23 TCGA-MX-A5UJ-01 7 150776817 150776817 G A FASTK Missense_Mutation p.A92V 0.24 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-MX-A5UJ-01 7 150814457 150814457 G - AGAP3 Splice_Site p.X161_splice 0.18 TCGA-MX-A5UJ-01 7 1512732 1512732 G A INTS1 Nonsense_Mutation p.R2016* 0.17 TCGA-MX-A5UJ-01 7 154863038 154863038 C A HTR5A Silent p.I143I 0.12 TCGA-MX-A5UJ-01 7 156521402 156521402 T - LMBR1 Frame_Shift_Del p.K284Rfs*52 0.21 TCGA-MX-A5UJ-01 7 16823085 16823086 - C TSPAN13 Frame_Shift_Ins p.R197Pfs*5 0.18 TCGA-MX-A5UJ-01 7 18535823 18535826 AAGT - HDAC9 5'Flank 0.43 TCGA-MX-A5UJ-01 7 20444334 20444334 C T ITGB8 Nonsense_Mutation p.Q591* 0.10 TCGA-MX-A5UJ-01 7 24758713 24758713 C T DFNA5 Missense_Mutation p.E177K 0.24 tolerated(0.07) possibly_damaging(0.87) TCGA-MX-A5UJ-01 7 26233316 26233316 T C HNRNPA2B1 Splice_Site p.X253_splice 0.23 TCGA-MX-A5UJ-01 7 26235512 26235512 G A HNRNPA2B1 Missense_Mutation p.R238C 0.23 tolerated(0.18) unknown(0) TCGA-MX-A5UJ-01 7 26245999 26245999 A - CBX3 Frame_Shift_Del p.K14Nfs*23 0.17 TCGA-MX-A5UJ-01 7 27204711 27204711 C T HOXA9 Silent p.A122A 0.13 TCGA-MX-A5UJ-01 7 30821610 30821610 A - FAM188B Frame_Shift_Del p.T69Qfs*49 0.18 TCGA-MX-A5UJ-01 7 31683400 31683400 T G CCDC129 Missense_Mutation p.C832G 0.18 tolerated(0.17) possibly_damaging(0.557) TCGA-MX-A5UJ-01 7 33192464 33192464 G A BBS9 Splice_Site p.X88_splice 0.21 TCGA-MX-A5UJ-01 7 34978896 34978896 T C DPY19L1 Silent p.A579A 0.14 TCGA-MX-A5UJ-01 7 38313227 38313227 T - TRGJP Frame_Shift_Del p.I8Sfs*? 0.22 TCGA-MX-A5UJ-01 7 4050653 4050653 C T SDK1 Silent p.T729T 0.12 TCGA-MX-A5UJ-01 7 4277291 4277291 C T SDK1 Missense_Mutation p.A2002V 0.15 tolerated(0.25) benign(0.066) TCGA-MX-A5UJ-01 7 44114091 44114091 G A POLM Missense_Mutation p.R292W 0.21 deleterious(0.02) benign(0.064) TCGA-MX-A5UJ-01 7 47408333 47408333 G A TNS3 Missense_Mutation p.T637I 0.23 tolerated(0.09) benign(0.042) TCGA-MX-A5UJ-01 7 47408746 47408746 C T TNS3 Silent p.S499S 0.15 TCGA-MX-A5UJ-01 7 4830368 4830368 A G AP5Z1 Missense_Mutation p.N668S 0.29 tolerated(0.4) benign(0.031) TCGA-MX-A5UJ-01 7 50514188 50514188 A G FIGNL1 Silent p.I266I 0.24 TCGA-MX-A5UJ-01 7 6204577 6204578 - T CYTH3 Frame_Shift_Ins p.*400Ifs*10 0.21 TCGA-MX-A5UJ-01 7 6205176 6205176 G A CYTH3 Silent p.P324P 0.21 TCGA-MX-A5UJ-01 7 6370143 6370143 G A FAM220A Missense_Mutation p.R215C 0.19 tolerated(0.2) benign(0.001) TCGA-MX-A5UJ-01 7 64378633 64378633 C T ZNF273 Silent p.C96C 0.19 TCGA-MX-A5UJ-01 7 66274218 66274218 G A KCTD7 Missense_Mutation p.V475I 0.22 tolerated(0.42) benign(0.003) TCGA-MX-A5UJ-01 7 72470023 72470023 C A STAG3L3 RNA 0.12 TCGA-MX-A5UJ-01 7 73008616 73008616 C T MLXIPL Missense_Mutation p.A810T 0.17 tolerated(0.17) benign(0.063) TCGA-MX-A5UJ-01 7 73249192 73249192 C T WBSCR27 Missense_Mutation p.A207T 0.23 tolerated_low_confidence(0.13) benign(0) TCGA-MX-A5UJ-01 7 74212018 74212018 C T GTF2IRD2 Silent p.S611S 0.17 TCGA-MX-A5UJ-01 7 751064 751065 - C PRKAR1B Frame_Shift_Ins p.I27Dfs*53 0.21 TCGA-MX-A5UJ-01 7 76629666 76629666 A - UPK3B Intron 0.14 TCGA-MX-A5UJ-01 7 83610721 83610721 G A SEMA3A Missense_Mutation p.A523V 0.27 deleterious(0.05) possibly_damaging(0.536) TCGA-MX-A5UJ-01 7 86569340 86569340 T - KIAA1324L Frame_Shift_Del p.N278Ifs*47 0.11 TCGA-MX-A5UJ-01 7 87179241 87179241 T C ABCB1 Missense_Mutation p.N494D 0.25 tolerated(1) benign(0.006) TCGA-MX-A5UJ-01 7 883025 883025 G A SUN1 Missense_Mutation p.A176T 0.27 tolerated(0.33) benign(0.005) TCGA-MX-A5UJ-01 7 88424142 88424142 G A C7orf62 Nonsense_Mutation p.R39* 0.16 TCGA-MX-A5UJ-01 7 88964514 88964514 C A ZNF804B Missense_Mutation p.L740I 0.18 deleterious(0.05) benign(0.152) TCGA-MX-A5UJ-01 7 896026 896026 A - SUN1 Frame_Shift_Del p.T463Qfs*23 0.23 TCGA-MX-A5UJ-01 7 92300845 92300845 A T CDK6 Missense_Mutation p.V181D 0.16 deleterious(0) benign(0.149) TCGA-MX-A5UJ-01 7 93519534 93519534 G A TFPI2 Silent p.R62R 0.32 TCGA-MX-A5UJ-01 7 95751263 95751263 C T SLC25A13 Silent p.T547T 0.12 TCGA-MX-A5UJ-01 7 97922811 97922811 G A BAIAP2L1 3'UTR 0.22 TCGA-MX-A5UJ-01 7 98581801 98581801 G A TRRAP Silent p.A3040A 0.21 TCGA-MX-A5UJ-01 7 99159585 99159585 G A ZNF655 Intron 0.37 TCGA-MX-A5UJ-01 7 99818819 99818819 T G PVRIG Missense_Mutation p.L309R 0.31 tolerated(0.56) probably_damaging(0.991) TCGA-MX-A5UJ-01 8 100866299 100866299 G A VPS13B Missense_Mutation p.R3586Q 0.10 tolerated(0.61) benign(0.238) TCGA-MX-A5UJ-01 8 10102702 10102702 T G MSRA Silent p.T100T 0.08 TCGA-MX-A5UJ-01 8 101075899 101075899 A - RGS22 Frame_Shift_Del p.L366* 0.11 TCGA-MX-A5UJ-01 8 101083674 101083675 - T RGS22 Frame_Shift_Ins p.P173Tfs*10 0.09 TCGA-MX-A5UJ-01 8 101154342 101154342 G A FBXO43 Missense_Mutation p.A47V 0.06 tolerated(0.21) benign(0.002) TCGA-MX-A5UJ-01 8 103289349 103289349 T - UBR5 Frame_Shift_Del p.E2121Kfs*28 0.28 TCGA-MX-A5UJ-01 8 103307255 103307255 G C UBR5 Missense_Mutation p.D1381E 0.18 deleterious(0.01) probably_damaging(0.97) TCGA-MX-A5UJ-01 8 10480308 10480308 T C RP1L1 Missense_Mutation p.Q135R 0.23 benign(0.021) TCGA-MX-A5UJ-01 8 105360772 105360772 G A DCSTAMP 5'UTR 0.16 TCGA-MX-A5UJ-01 8 105601119 105601119 A G LRP12 Missense_Mutation p.C3R 0.12 tolerated_low_confidence(0.46) benign(0) TCGA-MX-A5UJ-01 8 10583646 10583646 G - SOX7 Frame_Shift_Del p.L309Wfs*14 0.14 TCGA-MX-A5UJ-01 8 10583913 10583913 C T SOX7 Missense_Mutation p.G220S 0.12 tolerated(0.31) benign(0.003) TCGA-MX-A5UJ-01 8 10755310 10755310 T - XKR6 3'UTR 0.55 TCGA-MX-A5UJ-01 8 107719359 107719359 A C OXR1 Missense_Mutation p.D538A 0.10 tolerated(0.08) benign(0.019) TCGA-MX-A5UJ-01 8 110308669 110308669 T G NUDCD1 Silent p.R135R 0.14 TCGA-MX-A5UJ-01 8 110575763 110575763 A C EBAG9 Intron 0.18 TCGA-MX-A5UJ-01 8 11189120 11189120 C G SLC35G5 Missense_Mutation p.L169V 0.11 tolerated(0.31) benign(0.083) TCGA-MX-A5UJ-01 8 11281886 11281887 - AG FAM167A Frame_Shift_Ins p.C214Sfs*156 0.14 TCGA-MX-A5UJ-01 8 117950599 117950599 C T AARD Silent p.D39D 0.16 TCGA-MX-A5UJ-01 8 122641122 122641122 G A HAS2 Silent p.H153H 0.16 TCGA-MX-A5UJ-01 8 126011845 126011845 C T SQLE Missense_Mutation p.S67L 0.08 tolerated_low_confidence(0.81) benign(0.005) TCGA-MX-A5UJ-01 8 12943849 12943849 G T DLC1 Silent p.P1472P 0.15 TCGA-MX-A5UJ-01 8 131073266 131073266 C T ASAP1 Silent p.P917P 0.14 TCGA-MX-A5UJ-01 8 131124415 131124415 C T ASAP1 Missense_Mutation p.V776I 0.13 tolerated(0.45) benign(0.012) TCGA-MX-A5UJ-01 8 131848544 131848544 T C ADCY8 Missense_Mutation p.D885G 0.13 deleterious(0.03) possibly_damaging(0.549) TCGA-MX-A5UJ-01 8 131916046 131916046 G T ADCY8 Missense_Mutation p.P628H 0.17 deleterious(0) probably_damaging(0.979) TCGA-MX-A5UJ-01 8 133925296 133925296 A C TG Missense_Mutation p.R1388S 0.10 tolerated(0.66) benign(0.021) TCGA-MX-A5UJ-01 8 134225171 134225171 G A WISP1 Missense_Mutation p.R45H 0.16 tolerated(0.05) benign(0.04) TCGA-MX-A5UJ-01 8 135614541 135614541 C T ZFAT Missense_Mutation p.R474H 0.10 deleterious(0.01) probably_damaging(0.998) TCGA-MX-A5UJ-01 8 139890197 139890197 C T COL22A1 Missense_Mutation p.G152S 0.18 unknown(0) TCGA-MX-A5UJ-01 8 141381186 141381186 C T TRAPPC9 Missense_Mutation p.V508M 0.16 deleterious(0.01) probably_damaging(0.994) TCGA-MX-A5UJ-01 8 141561437 141561437 G A AGO2 Silent p.F456F 0.16 TCGA-MX-A5UJ-01 8 142367563 142367563 C T GPR20 Missense_Mutation p.R154Q 0.09 tolerated(1) benign(0.002) TCGA-MX-A5UJ-01 8 143562629 143562629 C T BAI1 Missense_Mutation p.R615W 0.13 deleterious(0) possibly_damaging(0.898) TCGA-MX-A5UJ-01 8 143695508 143695508 A G ARC Missense_Mutation p.V42A 0.15 deleterious_low_confidence(0.02) probably_damaging(0.987) TCGA-MX-A5UJ-01 8 143994862 143994862 C T CYP11B2 Silent p.A320A 0.14 TCGA-MX-A5UJ-01 8 144358416 144358416 T C GLI4 Silent p.S191S 0.12 TCGA-MX-A5UJ-01 8 144403514 144403514 C T TOP1MT Missense_Mutation p.A335T 0.21 deleterious(0) probably_damaging(0.993) TCGA-MX-A5UJ-01 8 144663239 144663239 C T EEF1D Silent p.T491T 0.14 TCGA-MX-A5UJ-01 8 144921094 144921094 G A NRBP2 Silent p.T235T 0.30 TCGA-MX-A5UJ-01 8 145058596 145058596 A G PARP10 Missense_Mutation p.C488R 0.22 deleterious(0.02) probably_damaging(0.979) TCGA-MX-A5UJ-01 8 145114806 145114806 C T OPLAH Missense_Mutation p.A44T 0.17 tolerated(0.12) benign(0.01) TCGA-MX-A5UJ-01 8 145540261 145540261 C T DGAT1 Missense_Mutation p.D475N 0.16 deleterious(0.01) probably_damaging(0.989) TCGA-MX-A5UJ-01 8 145659021 145659021 C T TONSL Missense_Mutation p.G1170D 0.12 deleterious(0.04) possibly_damaging(0.849) TCGA-MX-A5UJ-01 8 145694710 145694710 G - KIFC2 Frame_Shift_Del p.Q392Sfs*25 0.17 TCGA-MX-A5UJ-01 8 145724440 145724440 G A PPP1R16A Missense_Mutation p.A158T 0.14 tolerated(0.47) benign(0.023) TCGA-MX-A5UJ-01 8 145746819 145746819 C T LRRC14 Missense_Mutation p.T480M 0.14 tolerated(0.23) possibly_damaging(0.507) TCGA-MX-A5UJ-01 8 146029117 146029117 T C ZNF517 Missense_Mutation p.V42A 0.11 deleterious(0) benign(0.418) TCGA-MX-A5UJ-01 8 1574920 1574920 A G DLGAP2 Missense_Mutation p.Q406R 0.15 tolerated(0.88) benign(0.104) TCGA-MX-A5UJ-01 8 19796948 19796948 C T LPL 5'UTR 0.22 TCGA-MX-A5UJ-01 8 20107589 20107589 G A LZTS1 Missense_Mutation p.R479W 0.09 deleterious(0) possibly_damaging(0.896) TCGA-MX-A5UJ-01 8 21978733 21978733 C T HR Missense_Mutation p.D738N 0.15 deleterious(0.03) possibly_damaging(0.887) TCGA-MX-A5UJ-01 8 22079106 22079106 G A PHYHIP Silent p.R251R 0.11 TCGA-MX-A5UJ-01 8 22277308 22277308 C T SLC39A14 3'UTR 0.17 TCGA-MX-A5UJ-01 8 22487477 22487477 T - BIN3 Frame_Shift_Del p.K113Sfs*13 0.19 TCGA-MX-A5UJ-01 8 22785141 22785141 C T PEBP4 Silent p.P29P 0.12 TCGA-MX-A5UJ-01 8 24772270 24772270 C T NEFM Missense_Mutation p.R322C 0.19 deleterious(0.01) unknown(0) TCGA-MX-A5UJ-01 8 25240289 25240289 C A DOCK5 Missense_Mutation p.L1376I 0.16 tolerated(0.07) benign(0.321) TCGA-MX-A5UJ-01 8 25287255 25287255 T - KCTD9 3'UTR 0.53 TCGA-MX-A5UJ-01 8 26237891 26237891 T G BNIP3L 5'Flank 0.13 TCGA-MX-A5UJ-01 8 26366201 26366201 G A PNMA2 Missense_Mutation p.T24M 0.16 tolerated(0.18) benign(0.002) TCGA-MX-A5UJ-01 8 28409242 28409242 T - FZD3 Frame_Shift_Del p.H512Mfs*8 0.11 TCGA-MX-A5UJ-01 8 28876278 28876278 C T HMBOX1 Silent p.G233G 0.15 TCGA-MX-A5UJ-01 8 30701328 30701328 C A TEX15 Nonsense_Mutation p.G1736* 0.09 TCGA-MX-A5UJ-01 8 30948388 30948388 T C WRN Missense_Mutation p.Y587H 0.10 deleterious(0) probably_damaging(0.996) TCGA-MX-A5UJ-01 8 37623132 37623132 G A PROSC Missense_Mutation p.R63H 0.12 deleterious(0.01) benign(0.431) TCGA-MX-A5UJ-01 8 37691612 37691612 C G GPR124 Missense_Mutation p.A525G 0.13 tolerated(0.33) benign(0.002) TCGA-MX-A5UJ-01 8 38067842 38067843 - A BAG4 Frame_Shift_Ins p.T405Dfs*23 0.19 TCGA-MX-A5UJ-01 8 38105224 38105224 T - DDHD2 Intron 0.15 TCGA-MX-A5UJ-01 8 38124842 38124842 C A PPAPDC1B Missense_Mutation p.G136W 0.16 deleterious(0) probably_damaging(1) TCGA-MX-A5UJ-01 8 38385880 38385880 C - C8orf86 Frame_Shift_Del p.C93Afs*2 0.10 TCGA-MX-A5UJ-01 8 38693718 38693718 G A TACC1 Silent p.S584S 0.13 TCGA-MX-A5UJ-01 8 38853953 38853953 C T TM2D2 Silent p.V2V 0.17 TCGA-MX-A5UJ-01 8 39613417 39613417 C A ADAM2 Nonsense_Mutation p.G543* 0.11 TCGA-MX-A5UJ-01 8 39694686 39694686 C T ADAM2 Missense_Mutation p.R34Q 0.10 tolerated(0.59) benign(0.019) TCGA-MX-A5UJ-01 8 41561977 41561977 G T ANK1 Missense_Mutation p.P737H 0.07 deleterious(0) probably_damaging(0.98) TCGA-MX-A5UJ-01 8 41571752 41571752 G A ANK1 Silent p.H607H 0.21 TCGA-MX-A5UJ-01 8 41583322 41583322 G A ANK1 Missense_Mutation p.A223V 0.14 deleterious(0) probably_damaging(0.999) TCGA-MX-A5UJ-01 8 42012435 42012438 TGTT - AP3M2 Frame_Shift_Del p.F78Sfs*23 0.16 TCGA-MX-A5UJ-01 8 42275486 42275486 C A SLC20A2 Splice_Site p.X599_splice 0.17 TCGA-MX-A5UJ-01 8 42611529 42611529 T - CHRNA6 Frame_Shift_Del p.V272* 0.12 TCGA-MX-A5UJ-01 8 42693100 42693100 T - THAP1 3'UTR 0.20 TCGA-MX-A5UJ-01 8 48701555 48701555 T - PRKDC Frame_Shift_Del p.N3604Tfs*48 0.17 TCGA-MX-A5UJ-01 8 48746805 48746805 T C PRKDC Missense_Mutation p.K2701E 0.13 benign(0.008) TCGA-MX-A5UJ-01 8 48749058 48749058 G A PRKDC Nonsense_Mutation p.R2597* 0.29 TCGA-MX-A5UJ-01 8 49831372 49831372 T C SNAI2 Silent p.A267A 0.15 TCGA-MX-A5UJ-01 8 49833884 49833884 G A SNAI2 5'UTR 0.09 TCGA-MX-A5UJ-01 8 54163395 54163395 A G OPRK1 Missense_Mutation p.V68A 0.09 tolerated(0.4) benign(0.063) TCGA-MX-A5UJ-01 8 55534032 55534032 C T RP1 Missense_Mutation p.A169V 0.11 tolerated(0.68) benign(0.004) TCGA-MX-A5UJ-01 8 56015841 56015841 G T XKR4 Missense_Mutation p.G265W 0.12 deleterious(0) probably_damaging(0.994) TCGA-MX-A5UJ-01 8 57358293 57358293 C T PENK Intron 0.25 TCGA-MX-A5UJ-01 8 59750732 59750732 C T TOX Missense_Mutation p.A278T 0.13 deleterious(0.01) probably_damaging(0.995) TCGA-MX-A5UJ-01 8 62430100 62430100 C T ASPH Missense_Mutation p.A705T 0.10 tolerated(0.27) possibly_damaging(0.548) TCGA-MX-A5UJ-01 8 6614777 6614778 TT - AGPAT5 Frame_Shift_Del p.L322Tfs*41 0.13 TCGA-MX-A5UJ-01 8 66619295 66619303 CCCCCACCG - MTFR1 In_Frame_Del p.P191_P193del 0.20 TCGA-MX-A5UJ-01 8 68179369 68179369 G A ARFGEF1 Missense_Mutation p.A590V 0.14 deleterious(0.03) probably_damaging(0.999) TCGA-MX-A5UJ-01 8 68950476 68950476 G A PREX2 Missense_Mutation p.R263Q 0.10 deleterious(0) possibly_damaging(0.837) TCGA-MX-A5UJ-01 8 69728118 69728118 C T C8orf34 Intron 0.13 TCGA-MX-A5UJ-01 8 70591817 70591817 C T SLCO5A1 Missense_Mutation p.R607H 0.15 deleterious(0.01) probably_damaging(0.953) TCGA-MX-A5UJ-01 8 73480224 73480224 C T KCNB2 Silent p.N85N 0.11 TCGA-MX-A5UJ-01 8 74894562 74894562 C T TMEM70 3'UTR 0.20 TCGA-MX-A5UJ-01 8 75227768 75227768 C T JPH1 Missense_Mutation p.R156H 0.17 deleterious(0.03) benign(0.168) TCGA-MX-A5UJ-01 8 77766323 77766323 C - ZFHX4 Frame_Shift_Del p.L2391* 0.10 TCGA-MX-A5UJ-01 8 80942415 80942417 GAA - MRPS28 In_Frame_Del p.F23del 0.24 TCGA-MX-A5UJ-01 8 8185621 8185621 G A SGK223 Missense_Mutation p.L891F 0.08 benign(0.014) TCGA-MX-A5UJ-01 8 82626226 82626226 T - ZFAND1 Frame_Shift_Del p.N136Ifs*10 0.11 TCGA-MX-A5UJ-01 8 90782083 90782083 A C RIPK2 Silent p.T189T 0.15 TCGA-MX-A5UJ-01 8 91643787 91643788 - A TMEM64 Frame_Shift_Ins p.C315Lfs*30 0.10 TCGA-MX-A5UJ-01 8 92352747 92352747 A - SLC26A7 Frame_Shift_Del p.K333Nfs*20 0.12 TCGA-MX-A5UJ-01 8 92998450 92998450 C T RUNX1T1 Missense_Mutation p.R405Q 0.14 deleterious(0.01) probably_damaging(0.91) TCGA-MX-A5UJ-01 8 95863872 95863872 T C INTS8 Silent p.H533H 0.13 TCGA-MX-A5UJ-01 8 96044227 96044227 C T NDUFAF6 Missense_Mutation p.R68W 0.17 deleterious(0.02) probably_damaging(0.935) TCGA-MX-A5UJ-01 8 96053842 96053842 C T NDUFAF6 Silent p.I155I 0.13 TCGA-MX-A5UJ-01 8 97157659 97157659 C T GDF6 Missense_Mutation p.R167Q 0.11 deleterious(0.01) probably_damaging(0.986) TCGA-MX-A5UJ-01 8 97345884 97345884 C T PTDSS1 3'UTR 0.17 TCGA-MX-A5UJ-01 8 97797388 97797388 T C CPQ Missense_Mutation p.I88T 0.14 deleterious(0) probably_damaging(0.979) TCGA-MX-A5UJ-01 8 98288830 98288830 G T TSPYL5 Missense_Mutation p.Q415K 0.13 tolerated(0.29) benign(0.001) TCGA-MX-A5UJ-01 8 98289556 98289556 C T TSPYL5 Missense_Mutation p.A173T 0.15 tolerated(0.72) benign(0.01) TCGA-MX-A5UJ-01 8 99248383 99248383 C T NIPAL2 Missense_Mutation p.G146S 0.14 deleterious(0) probably_damaging(0.996) TCGA-MX-A5UJ-01 9 100412837 100412837 A G NCBP1 Missense_Mutation p.N317S 0.19 tolerated(0.39) benign(0.018) TCGA-MX-A5UJ-01 9 101980915 101980915 A - ALG2 Frame_Shift_Del p.F184Lfs*11 0.19 TCGA-MX-A5UJ-01 9 104075142 104075142 C T LPPR1 Silent p.L233L 0.23 TCGA-MX-A5UJ-01 9 107331745 107331745 G T OR13C8 Silent p.V99V 0.22 TCGA-MX-A5UJ-01 9 111979202 111979202 T C EPB41L4B Missense_Mutation p.K545E 0.20 tolerated(0.4) benign(0.036) TCGA-MX-A5UJ-01 9 118974016 118974016 C T PAPPA Nonsense_Mutation p.R575* 0.20 TCGA-MX-A5UJ-01 9 119495739 119495739 C T ASTN2 Silent p.P769P 0.12 TCGA-MX-A5UJ-01 9 124074484 124074485 TG - GSN Intron 0.17 TCGA-MX-A5UJ-01 9 125582668 125582668 C T PDCL Missense_Mutation p.C201Y 0.20 deleterious(0) probably_damaging(0.949) TCGA-MX-A5UJ-01 9 127549310 127549310 C T OLFML2A Silent p.C49C 0.12 TCGA-MX-A5UJ-01 9 129642864 129642864 C T ZBTB34 Nonsense_Mutation p.R392* 0.30 TCGA-MX-A5UJ-01 9 131028134 131028134 G A GOLGA2 Silent p.L226L 0.28 TCGA-MX-A5UJ-01 9 131476550 131476550 C - PKN3 Frame_Shift_Del p.C465Afs*43 0.23 TCGA-MX-A5UJ-01 9 131715065 131715065 C T RP11-101E3.5 Missense_Mutation p.A55V 0.19 tolerated(0.26) benign(0.029) TCGA-MX-A5UJ-01 9 133901754 133901754 C T LAMC3 Silent p.R152R 0.15 TCGA-MX-A5UJ-01 9 134366909 134366909 C - PRRC2B Frame_Shift_Del p.R2110Efs*13 0.20 TCGA-MX-A5UJ-01 9 135203684 135203684 T C SETX Missense_Mutation p.N1101D 0.17 tolerated(0.33) benign(0.298) TCGA-MX-A5UJ-01 9 135458535 135458535 C T BARHL1 Silent p.S117S 0.16 TCGA-MX-A5UJ-01 9 135863633 135863633 C T GFI1B Silent p.S96S 0.23 TCGA-MX-A5UJ-01 9 136199145 136199145 G A SURF6 Missense_Mutation p.R216C 0.19 deleterious(0) probably_damaging(0.965) TCGA-MX-A5UJ-01 9 136228029 136228029 C T SURF2 3'UTR 0.22 TCGA-MX-A5UJ-01 9 136385357 136385357 G A TMEM8C Silent p.H63H 0.15 TCGA-MX-A5UJ-01 9 136916775 136916775 T - BRD3 Frame_Shift_Del p.V137Wfs*106 0.18 TCGA-MX-A5UJ-01 9 138454243 138454243 C - PAEP Frame_Shift_Del p.E69Rfs*67 0.18 TCGA-MX-A5UJ-01 9 139317614 139317614 C T PMPCA Silent p.A492A 0.21 TCGA-MX-A5UJ-01 9 139820457 139820457 C T TRAF2 3'UTR 0.24 TCGA-MX-A5UJ-01 9 139908407 139908407 C T ABCA2 Missense_Mutation p.G1442R 0.22 deleterious(0) probably_damaging(0.997) TCGA-MX-A5UJ-01 9 139911757 139911757 G A ABCA2 Missense_Mutation p.S815L 0.28 deleterious(0) probably_damaging(0.956) TCGA-MX-A5UJ-01 9 140058244 140058244 C T GRIN1 Missense_Mutation p.A847V 0.23 tolerated(0.06) benign(0.145) TCGA-MX-A5UJ-01 9 140139877 140139877 G A FAM166A Missense_Mutation p.P135L 0.22 deleterious(0.04) benign(0.09) TCGA-MX-A5UJ-01 9 140695337 140695337 C T EHMT1 Silent p.D871D 0.23 TCGA-MX-A5UJ-01 9 18574056 18574056 G A ADAMTSL1 Missense_Mutation p.R89Q 0.26 deleterious(0) probably_damaging(0.999) TCGA-MX-A5UJ-01 9 19296163 19296164 - T DENND4C Frame_Shift_Ins p.E323* 0.18 TCGA-MX-A5UJ-01 9 19346176 19346176 A G DENND4C Missense_Mutation p.K1088E 0.20 deleterious(0.01) benign(0.236) TCGA-MX-A5UJ-01 9 27190596 27190596 G T TEK Missense_Mutation p.S466I 0.20 tolerated(0.09) possibly_damaging(0.821) TCGA-MX-A5UJ-01 9 27949047 27949047 T C LINGO2 Missense_Mutation p.I541M 0.20 deleterious(0.01) probably_damaging(0.997) TCGA-MX-A5UJ-01 9 32427423 32427423 G T ACO1 Silent p.L491L 0.26 TCGA-MX-A5UJ-01 9 32488795 32488795 G A DDX58 Missense_Mutation p.A297V 0.16 tolerated(0.09) possibly_damaging(0.785) TCGA-MX-A5UJ-01 9 33280824 33280824 T C CHMP5 Silent p.D209D 0.22 TCGA-MX-A5UJ-01 9 35404014 35404014 C T UNC13B Missense_Mutation p.T1587M 0.13 deleterious(0.02) benign(0.028) TCGA-MX-A5UJ-01 9 37780704 37780704 T C EXOSC3 Missense_Mutation p.Q267R 0.24 tolerated(0.16) benign(0.025) TCGA-MX-A5UJ-01 9 37861380 37861380 C T DCAF10 Missense_Mutation p.R519W 0.18 tolerated(0.07) possibly_damaging(0.862) TCGA-MX-A5UJ-01 9 37888580 37888580 T - SLC25A51 5'UTR 0.21 TCGA-MX-A5UJ-01 9 6434147 6434147 C T UHRF2 Silent p.D206D 0.15 TCGA-MX-A5UJ-01 9 72723268 72723268 C A MAMDC2 Missense_Mutation p.P97H 0.25 deleterious(0.02) probably_damaging(0.926) TCGA-MX-A5UJ-01 9 80932598 80932598 C T PSAT1 Silent p.Y249Y 0.17 TCGA-MX-A5UJ-01 9 91150510 91150510 C T NXNL2 Missense_Mutation p.A54V 0.16 deleterious(0) benign(0.418) TCGA-MX-A5UJ-01 9 95782638 95782638 G A FGD3 Missense_Mutation p.E476K 0.26 deleterious(0.02) benign(0.306) TCGA-MX-A5UJ-01 9 96021314 96021314 G A WNK2 Silent p.V828V 0.23 TCGA-MX-A5UJ-01 9 99797855 99797855 C T CTSV Missense_Mutation p.V248I 0.20 tolerated(0.09) benign(0.112) TCGA-MX-A5UJ-01 X 100645994 100645994 G A RPL36A Missense_Mutation p.R24Q 0.23 tolerated(0.62) benign(0) TCGA-MX-A5UJ-01 X 100668147 100668147 G A HNRNPH2 Missense_Mutation p.A391T 0.05 tolerated(0.1) benign(0.035) TCGA-MX-A5UJ-01 X 100911496 100911496 C A ARMCX2 Missense_Mutation p.R360L 0.23 tolerated(0.47) benign(0.005) TCGA-MX-A5UJ-01 X 101910953 101910953 C A GPRASP1 Silent p.V704V 0.18 TCGA-MX-A5UJ-01 X 105876387 105876387 G A CXorf57 Missense_Mutation p.R403H 0.19 deleterious(0) benign(0.255) TCGA-MX-A5UJ-01 X 106069300 106069300 T - TBC1D8B Frame_Shift_Del p.F291Lfs*9 0.21 TCGA-MX-A5UJ-01 X 107979183 107979183 G A IRS4 Missense_Mutation p.A131V 0.21 deleterious_low_confidence(0) possibly_damaging(0.837) TCGA-MX-A5UJ-01 X 107979335 107979335 G T IRS4 Nonsense_Mutation p.C80* 0.23 TCGA-MX-A5UJ-01 X 109964642 109964642 G A CHRDL1 Missense_Mutation p.P140S 0.24 tolerated(0.21) possibly_damaging(0.574) TCGA-MX-A5UJ-01 X 11157229 11157229 C T ARHGAP6 Silent p.A893A 0.27 TCGA-MX-A5UJ-01 X 115585600 115585600 G A SLC6A14 Missense_Mutation p.V466M 0.17 deleterious(0) probably_damaging(0.995) TCGA-MX-A5UJ-01 X 117727302 117727302 T C DOCK11 Splice_Site p.X755_splice 0.27 TCGA-MX-A5UJ-01 X 117959711 117959711 A C ZCCHC12 Missense_Mutation p.K168N 0.24 tolerated(0.11) possibly_damaging(0.798) TCGA-MX-A5UJ-01 X 118374397 118374397 A T PGRMC1 Missense_Mutation p.T152S 0.19 tolerated(1) benign(0.003) TCGA-MX-A5UJ-01 X 129055439 129055439 G T UTP14A Missense_Mutation p.E408D 0.24 tolerated(0.07) benign(0.069) TCGA-MX-A5UJ-01 X 129155065 129155065 C T BCORL1 Missense_Mutation p.R1183W 0.23 benign(0.015) TCGA-MX-A5UJ-01 X 132160413 132160413 T - USP26 Frame_Shift_Del p.G613Afs*26 0.26 TCGA-MX-A5UJ-01 X 134186157 134186157 C T FAM127B 5'UTR 0.23 TCGA-MX-A5UJ-01 X 134494812 134494812 G A ZNF449 Silent p.T456T 0.11 TCGA-MX-A5UJ-01 X 136649466 136649466 C T ZIC3 Missense_Mutation p.R206C 0.23 deleterious(0) possibly_damaging(0.899) TCGA-MX-A5UJ-01 X 138724773 138724774 - A MCF2 Intron 0.19 TCGA-MX-A5UJ-01 X 1404703 1404703 A G CSF2RA Missense_Mutation p.N37D 0.24 deleterious(0.02) possibly_damaging(0.905) TCGA-MX-A5UJ-01 X 142718126 142718126 C T SLITRK4 Missense_Mutation p.G267S 0.15 tolerated(0.75) probably_damaging(0.999) TCGA-MX-A5UJ-01 X 142967510 142967510 G A UBE2NL Missense_Mutation p.R103H 0.12 tolerated(0.05) benign(0.088) TCGA-MX-A5UJ-01 X 14937957 14937957 G A MOSPD2 3'UTR 0.19 TCGA-MX-A5UJ-01 X 149809827 149809827 C T MTM1 Missense_Mutation p.P205L 0.17 deleterious(0) probably_damaging(1) TCGA-MX-A5UJ-01 X 1499940 1499941 - C IL3RA Frame_Shift_Ins p.R337Pfs*11 0.21 TCGA-MX-A5UJ-01 X 150791492 150791493 TA - PASD1 Frame_Shift_Del p.Y168Sfs*24 0.20 TCGA-MX-A5UJ-01 X 150912333 150912333 G A CNGA2 Missense_Mutation p.R453H 0.21 deleterious(0.01) possibly_damaging(0.808) TCGA-MX-A5UJ-01 X 150912589 150912589 T C CNGA2 Silent p.A538A 0.23 TCGA-MX-A5UJ-01 X 152159259 152159259 C T PNMA5 Missense_Mutation p.R295Q 0.15 tolerated(0.37) benign(0.095) TCGA-MX-A5UJ-01 X 152613165 152613165 G A ZNF275 Intron 0.24 TCGA-MX-A5UJ-01 X 152815000 152815000 G A ATP2B3 Missense_Mutation p.E462K 0.24 deleterious(0) possibly_damaging(0.713) TCGA-MX-A5UJ-01 X 153134360 153134360 C T L1CAM Missense_Mutation p.V439I 0.25 deleterious(0.03) probably_damaging(0.999) TCGA-MX-A5UJ-01 X 153171568 153171568 G A AVPR2 Missense_Mutation p.R203H 0.21 deleterious(0) probably_damaging(0.993) TCGA-MX-A5UJ-01 X 153416241 153416241 G A OPN1LW Missense_Mutation p.A76T 0.11 deleterious(0.01) benign(0.023) TCGA-MX-A5UJ-01 X 153418411 153418411 A G OPN1LW Splice_Site p.X137_splice 0.24 TCGA-MX-A5UJ-01 X 153453504 153453504 G A OPN1MW Missense_Mutation p.V120M 0.32 tolerated(0.07) possibly_damaging(0.815) TCGA-MX-A5UJ-01 X 153599632 153599632 G - FLNA 5'UTR 0.25 TCGA-MX-A5UJ-01 X 153699538 153699540 GGT - PLXNA3 In_Frame_Del p.V1751del 0.27 TCGA-MX-A5UJ-01 X 17739685 17739685 C T NHS Missense_Mutation p.T326M 0.20 deleterious(0) probably_damaging(0.999) TCGA-MX-A5UJ-01 X 21627557 21627558 - G CNKSR2 Frame_Shift_Ins p.K841Qfs*11 0.23 TCGA-MX-A5UJ-01 X 21675004 21675004 C T KLHL34 Silent p.P301P 0.27 TCGA-MX-A5UJ-01 X 21675045 21675046 - CC KLHL34 Frame_Shift_Ins p.R288Gfs*8 0.19 TCGA-MX-A5UJ-01 X 24751974 24751974 G A POLA1 Intron 0.24 TCGA-MX-A5UJ-01 X 35937997 35937997 C T CXorf22 Silent p.V27V 0.22 TCGA-MX-A5UJ-01 X 41782278 41782278 T C CASK 5'Flank 0.31 TCGA-MX-A5UJ-01 X 43656372 43656372 C A MAOB Missense_Mutation p.Q206H 0.19 deleterious(0) probably_damaging(0.999) TCGA-MX-A5UJ-01 X 46739137 46739137 G A RP2 Missense_Mutation p.S329N 0.23 tolerated(0.88) benign(0) TCGA-MX-A5UJ-01 X 47426415 47426415 C - ARAF Frame_Shift_Del p.R255Gfs*37 0.22 TCGA-MX-A5UJ-01 X 47485836 47485836 C T CFP Silent p.P341P 0.32 TCGA-MX-A5UJ-01 X 47836480 47836480 G A ZNF182 Missense_Mutation p.H336Y 0.18 deleterious(0) probably_damaging(0.999) TCGA-MX-A5UJ-01 X 48922629 48922629 G A CCDC120 Missense_Mutation p.E228K 0.24 deleterious(0.04) possibly_damaging(0.787) TCGA-MX-A5UJ-01 X 52673581 52673581 G A SSX7 3'UTR 0.20 TCGA-MX-A5UJ-01 X 52842215 52842215 G A XAGE5 Missense_Mutation p.D42N 0.29 tolerated(0.06) benign(0.107) TCGA-MX-A5UJ-01 X 53105840 53105840 G A GPR173 Missense_Mutation p.G13S 0.17 tolerated_low_confidence(0.53) benign(0.001) TCGA-MX-A5UJ-01 X 53106226 53106226 G A GPR173 Silent p.A141A 0.14 TCGA-MX-A5UJ-01 X 53222180 53222180 C T KDM5C Missense_Mutation p.C1551Y 0.11 tolerated_low_confidence(0.78) possibly_damaging(0.761) TCGA-MX-A5UJ-01 X 53615345 53615345 A - HUWE1 Frame_Shift_Del p.F1537Lfs*4 0.20 TCGA-MX-A5UJ-01 X 54482960 54482960 A G FGD1 Silent p.N559N 0.23 TCGA-MX-A5UJ-01 X 54783866 54783866 T C ITIH6 Missense_Mutation p.M881V 0.14 tolerated(0.34) benign(0) TCGA-MX-A5UJ-01 X 55020464 55020464 T G PFKFB1 5'UTR 0.44 TCGA-MX-A5UJ-01 X 55650633 55650633 C T FOXR2 Silent p.D163D 0.20 TCGA-MX-A5UJ-01 X 5821721 5821721 G A NLGN4X Missense_Mutation p.P333L 0.22 deleterious(0) possibly_damaging(0.577) TCGA-MX-A5UJ-01 X 64722078 64722078 C - ZC3H12B Frame_Shift_Del p.H502Tfs*48 0.29 TCGA-MX-A5UJ-01 X 64734803 64734803 C T LAS1L Missense_Mutation p.E660K 0.28 deleterious(0.04) benign(0.127) TCGA-MX-A5UJ-01 X 65427137 65427137 C T HEPH Missense_Mutation p.R852W 0.23 deleterious(0) possibly_damaging(0.582) TCGA-MX-A5UJ-01 X 66931469 66931469 G A AR Missense_Mutation p.S704N 0.26 deleterious(0) probably_damaging(0.997) TCGA-MX-A5UJ-01 X 68382054 68382056 CGT - PJA1 In_Frame_Del p.R343del 0.15 TCGA-MX-A5UJ-01 X 69283015 69283015 C T OTUD6A Missense_Mutation p.T214M 0.16 deleterious(0) benign(0.425) TCGA-MX-A5UJ-01 X 69500125 69500125 G A ARR3 Missense_Mutation p.G329D 0.23 deleterious(0.02) benign(0.176) TCGA-MX-A5UJ-01 X 70519795 70519795 C A NONO Missense_Mutation p.P429T 0.20 tolerated(0.56) benign(0.001) TCGA-MX-A5UJ-01 X 70586174 70586174 G A TAF1 Missense_Mutation p.G4S 0.21 tolerated_low_confidence(0.56) benign(0) TCGA-MX-A5UJ-01 X 72667406 72667406 C T CDX4 Missense_Mutation p.A106V 0.31 tolerated(0.84) benign(0.003) TCGA-MX-A5UJ-01 X 7268043 7268043 A G STS Missense_Mutation p.D498G 0.22 deleterious(0) possibly_damaging(0.552) TCGA-MX-A5UJ-01 X 73964076 73964076 C T KIAA2022 Missense_Mutation p.A106T 0.21 tolerated(1) benign(0.005) TCGA-MX-A5UJ-01 X 76937581 76937581 T - ATRX Frame_Shift_Del p.K1056Rfs*62 0.18 TCGA-MX-A5UJ-01 X 77112337 77112337 G A MAGT1 Missense_Mutation p.P221S 0.05 tolerated(0.12) benign(0.037) TCGA-MX-A5UJ-01 X 79277880 79277880 A - TBX22 Frame_Shift_Del p.K39Rfs*74 0.20 TCGA-MX-A5UJ-01 X 79955509 79955509 T C BRWD3 Missense_Mutation p.K964E 0.31 deleterious(0.03) benign(0.298) TCGA-MX-A5UJ-01 X 83403063 83403063 T - RPS6KA6 Frame_Shift_Del p.A110Pfs*3 0.27 TCGA-MX-A5UJ-01 X 83724102 83724102 G T HDX Missense_Mutation p.P210H 0.17 deleterious(0) possibly_damaging(0.866) TCGA-MX-A5UJ-01 X 84510294 84510294 G A ZNF711 Missense_Mutation p.D37N 0.21 tolerated_low_confidence(0.05) benign(0.228) TCGA-MX-A5UJ-01 X 8507773 8507773 G A KAL1 Missense_Mutation p.R461W 0.16 deleterious(0) benign(0.364) TCGA-MX-A5UJ-01 X 86069720 86069720 A - DACH2 Frame_Shift_Del p.T525Pfs*33 0.15 TCGA-MX-A5UJ-01 X 90691415 90691415 G A PABPC5 Missense_Mutation p.R280H 0.24 deleterious(0) probably_damaging(0.999) TCGA-MX-A5UJ-01 X 91873919 91873919 A G PCDH11X Missense_Mutation p.M1342V 0.26 tolerated_low_confidence(0.36) benign(0.001) TCGA-MX-A663-01 10 103917849 103917849 A C NOLC1 Missense_Mutation p.K162T 0.08 deleterious_low_confidence(0) benign(0.403) TCGA-MX-A663-01 10 15875637 15875637 G A FAM188A Missense_Mutation p.S241L 0.07 tolerated(0.05) probably_damaging(0.986) TCGA-MX-A663-01 10 27494141 27494141 G A ACBD5 Nonsense_Mutation p.Q481* 0.19 TCGA-MX-A663-01 10 64967264 64967264 T C JMJD1C Missense_Mutation p.N1389D 0.08 deleterious(0.01) benign(0.027) TCGA-MX-A663-01 10 68687575 68687575 T G LRRTM3 Missense_Mutation p.W301G 0.17 deleterious(0) probably_damaging(0.998) TCGA-MX-A663-01 10 70992788 70992788 G A HKDC1 Missense_Mutation p.D132N 0.21 deleterious(0.03) benign(0.001) TCGA-MX-A663-01 11 119182977 119182977 G C MCAM Missense_Mutation p.N341K 0.10 deleterious(0) probably_damaging(0.952) TCGA-MX-A663-01 11 121425900 121425900 T C SORL1 Missense_Mutation p.L815P 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-MX-A663-01 11 123847795 123847795 C A OR10S1 Missense_Mutation p.A202S 0.08 deleterious(0) probably_damaging(0.999) TCGA-MX-A663-01 11 55541233 55541233 G T OR5D13 Missense_Mutation p.C107F 0.23 deleterious(0) possibly_damaging(0.873) TCGA-MX-A663-01 11 56058019 56058019 G A OR8H1 Missense_Mutation p.R174C 0.29 deleterious(0.01) possibly_damaging(0.601) TCGA-MX-A663-01 12 1221445 1221445 C T ERC1 Missense_Mutation p.A461V 0.23 tolerated_low_confidence(0.8) benign(0.001) TCGA-MX-A663-01 12 126138910 126138910 C A TMEM132B Missense_Mutation p.P964Q 0.09 tolerated(0.48) possibly_damaging(0.785) TCGA-MX-A663-01 12 130912805 130912805 G T RIMBP2 Missense_Mutation p.D760E 0.05 tolerated(0.19) probably_damaging(1) TCGA-MX-A663-01 12 49658874 49658874 C T TUBA1C 5'UTR 0.22 TCGA-MX-A663-01 12 52629105 52629105 C T KRT7 Missense_Mutation p.A164V 0.10 tolerated(0.39) benign(0.007) TCGA-MX-A663-01 12 6730347 6730347 C T LPAR5 Missense_Mutation p.R23H 0.19 tolerated(0.82) benign(0.007) TCGA-MX-A663-01 12 72372741 72372741 G C TPH2 Missense_Mutation p.G272A 0.09 deleterious(0) probably_damaging(1) TCGA-MX-A663-01 12 81242086 81242086 G T LIN7A Missense_Mutation p.H73N 0.16 deleterious(0.01) benign(0.181) TCGA-MX-A663-01 14 21051954 21051954 T C RNASE11 3'UTR 0.32 TCGA-MX-A663-01 14 75574178 75574178 C T NEK9 Missense_Mutation p.G399S 0.24 deleterious(0.01) probably_damaging(0.996) TCGA-MX-A663-01 15 23445373 23445373 G A AC100757.1 3'Flank 0.15 TCGA-MX-A663-01 15 62219421 62219421 T C VPS13C Missense_Mutation p.T2129A 0.21 tolerated(0.05) benign(0.002) TCGA-MX-A663-01 15 72641576 72641576 C T HEXA Missense_Mutation p.C277Y 0.07 deleterious(0) probably_damaging(0.999) TCGA-MX-A663-01 16 1292161 1292161 C A TPSAB1 Missense_Mutation p.Q250K 0.10 tolerated(0.3) benign(0.009) TCGA-MX-A663-01 16 2034718 2034718 A G GFER Intron 0.17 TCGA-MX-A663-01 16 20491929 20491929 G T ACSM2A Missense_Mutation p.G439V 0.20 deleterious(0.03) benign(0.327) TCGA-MX-A663-01 16 53686795 53686795 G A RPGRIP1L Nonsense_Mutation p.R602* 0.21 TCGA-MX-A663-01 16 84067015 84067015 G A SLC38A8 Missense_Mutation p.R150C 0.13 deleterious(0) probably_damaging(0.982) TCGA-MX-A663-01 16 85696619 85696619 G A GSE1 Missense_Mutation p.E765K 0.10 deleterious(0) probably_damaging(0.999) TCGA-MX-A663-01 16 89350504 89350504 C T ANKRD11 Missense_Mutation p.E816K 0.41 benign(0.443) TCGA-MX-A663-01 17 15643509 15643509 C G TBC1D26 Intron 0.04 TCGA-MX-A663-01 17 19458975 19458975 G A SLC47A1 Silent p.G237G 0.30 TCGA-MX-A663-01 17 27031442 27031442 G T PROCA1 Missense_Mutation p.S80Y 0.03 deleterious(0.03) benign(0.176) TCGA-MX-A663-01 17 33904436 33904436 G C PEX12 Missense_Mutation p.Q101E 0.04 tolerated(1) benign(0.004) TCGA-MX-A663-01 17 46133882 46133882 C T NFE2L1 Silent p.T215T 0.35 TCGA-MX-A663-01 17 61628022 61628022 G A DCAF7 5'UTR 0.20 TCGA-MX-A663-01 18 28650780 28650780 G A DSC2 Missense_Mutation p.T721M 0.31 tolerated(0.11) benign(0.012) TCGA-MX-A663-01 18 40851725 40851725 C T SYT4 Missense_Mutation p.V308I 0.33 tolerated(0.19) benign(0.09) TCGA-MX-A663-01 19 11617222 11617222 G C ECSIT Missense_Mutation p.A358G 0.18 deleterious(0) probably_damaging(0.946) TCGA-MX-A663-01 19 39976401 39976401 C T TIMM50 Missense_Mutation p.T252M 0.16 deleterious(0) probably_damaging(1) TCGA-MX-A663-01 19 41758857 41758857 C G AXL Silent p.L637L 0.09 TCGA-MX-A663-01 19 4180847 4180847 C T SIRT6 Nonsense_Mutation p.W42* 0.07 TCGA-MX-A663-01 19 57901470 57901470 G A AC003002.6 Translation_Start_Site p.M1? 0.19 deleterious_low_confidence(0) benign(0.001) TCGA-MX-A663-01 19 57901471 57901471 A C AC003002.6 Missense_Mutation p.N2H 0.18 tolerated_low_confidence(0.18) benign(0.303) TCGA-MX-A663-01 19 7965572 7965572 G A LRRC8E Missense_Mutation p.R722H 0.17 tolerated(0.08) benign(0.001) TCGA-MX-A663-01 19 9073400 9073400 C T MUC16 Silent p.Q4682Q 0.10 TCGA-MX-A663-01 1 152081561 152081561 C T TCHH Missense_Mutation p.E1378K 0.05 unknown(0) TCGA-MX-A663-01 1 156446840 156446840 G A MEF2D Silent p.I273I 0.18 TCGA-MX-A663-01 1 158549358 158549358 G A OR10X1 Missense_Mutation p.T111I 0.11 tolerated(0.6) benign(0) TCGA-MX-A663-01 1 158623116 158623116 G A SPTA1 Nonsense_Mutation p.R1046* 0.09 TCGA-MX-A663-01 1 176709278 176709278 C T PAPPA2 Missense_Mutation p.S1366L 0.16 tolerated(0.72) benign(0.004) TCGA-MX-A663-01 1 200959739 200959739 C A KIF21B Missense_Mutation p.V934F 0.18 tolerated(0.6) benign(0.045) TCGA-MX-A663-01 1 206760022 206760022 C G RASSF5 Intron 0.10 TCGA-MX-A663-01 1 226026403 226026403 G A EPHX1 Missense_Mutation p.G138D 0.04 tolerated(0.13) benign(0.25) TCGA-MX-A663-01 1 228437821 228437821 C T OBSCN Nonsense_Mutation p.R1489* 0.12 TCGA-MX-A663-01 1 235505812 235505812 G C GGPS1 Missense_Mutation p.E210Q 0.05 deleterious(0) probably_damaging(0.998) TCGA-MX-A663-01 1 27105808 27105809 AG - ARID1A Frame_Shift_Del p.S1807* 0.25 TCGA-MX-A663-01 1 2938272 2938272 G C ACTRT2 Missense_Mutation p.D8H 0.07 deleterious(0.04) probably_damaging(0.938) TCGA-MX-A663-01 1 67266857 67266857 G T INSL5 Silent p.A16A 0.09 TCGA-MX-A663-01 1 92442753 92442753 C T BRDT Nonsense_Mutation p.Q258* 0.06 TCGA-MX-A663-01 20 47782605 47782605 T A STAU1 Missense_Mutation p.E45V 0.05 deleterious_low_confidence(0.01) possibly_damaging(0.788) TCGA-MX-A663-01 20 5930953 5930953 C T TRMT6 Silent p.V33V 0.10 TCGA-MX-A663-01 2 105858679 105858679 G A GPR45 Missense_Mutation p.V122M 0.39 deleterious(0.02) possibly_damaging(0.671) TCGA-MX-A663-01 2 141298575 141298575 C G LRP1B Missense_Mutation p.D2494H 0.08 possibly_damaging(0.861) TCGA-MX-A663-01 2 18767572 18767572 G T NT5C1B Missense_Mutation p.S129Y 0.08 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-MX-A663-01 2 196681514 196681514 C T DNAH7 Missense_Mutation p.R3200H 0.08 deleterious(0) probably_damaging(0.987) TCGA-MX-A663-01 2 237416025 237416025 G T IQCA1 5'UTR 0.15 TCGA-MX-A663-01 2 32750043 32750043 G A BIRC6 Silent p.A3904A 0.46 TCGA-MX-A663-01 2 61515931 61515931 G T USP34 Missense_Mutation p.H1544N 0.15 deleterious(0.05) benign(0.048) TCGA-MX-A663-01 2 72740271 72740271 C G EXOC6B Missense_Mutation p.R386P 0.11 deleterious(0) probably_damaging(0.997) TCGA-MX-A663-01 3 183823753 183823753 C G HTR3E Silent p.L333L 0.04 TCGA-MX-A663-01 3 37695243 37695243 C G ITGA9 Silent p.A626A 0.06 TCGA-MX-A663-01 4 122853759 122853759 G A TRPC3 Silent p.D218D 0.24 TCGA-MX-A663-01 4 175898646 175898646 G T ADAM29 Missense_Mutation p.G657V 0.26 deleterious(0) probably_damaging(1) TCGA-MX-A663-01 4 2828987 2828987 C T SH3BP2 Silent p.Y210Y 0.31 TCGA-MX-A663-01 4 38690456 38690456 C T KLF3 Missense_Mutation p.P103L 0.16 tolerated(0.05) probably_damaging(0.995) TCGA-MX-A663-01 4 74442188 74442188 C T RASSF6 Missense_Mutation p.E325K 0.18 tolerated(0.14) benign(0.323) TCGA-MX-A663-01 5 101834464 101834464 G T SLCO6A1 Missense_Mutation p.P29T 0.19 tolerated(0.66) benign(0.175) TCGA-MX-A663-01 5 140516509 140516509 G A PCDHB5 Missense_Mutation p.R498H 0.13 deleterious_low_confidence(0.01) benign(0) TCGA-MX-A663-01 5 140718933 140718933 G T PCDHGA2 Missense_Mutation p.R132L 0.05 deleterious_low_confidence(0.01) benign(0.119) TCGA-MX-A663-01 5 140801789 140801789 C T PCDHGA11 Missense_Mutation p.T332M 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.492) TCGA-MX-A663-01 5 154395601 154395601 C T KIF4B Missense_Mutation p.R728W 0.14 deleterious(0) probably_damaging(0.988) TCGA-MX-A663-01 5 63256685 63256685 C T HTR1A Missense_Mutation p.A288T 0.13 tolerated(0.77) benign(0.02) TCGA-MX-A663-01 6 128388717 128388717 C T PTPRK Missense_Mutation p.A702T 0.09 tolerated(0.39) probably_damaging(0.991) TCGA-MX-A663-01 6 152671358 152671358 T C SYNE1 Missense_Mutation p.D3949G 0.16 benign(0.003) TCGA-MX-A663-01 6 160903753 160903753 G T LPAL2 RNA 0.29 TCGA-MX-A663-01 6 28269496 28269496 A G PGBD1 Missense_Mutation p.Y622C 0.05 deleterious(0.04) probably_damaging(0.964) TCGA-MX-A663-01 6 70098787 70098787 A T BAI3 3'UTR 0.09 TCGA-MX-A663-01 6 70410688 70410688 C T LMBRD1 Missense_Mutation p.R386Q 0.26 tolerated(0.07) benign(0.187) TCGA-MX-A663-01 6 72889501 72889501 C T RIMS1 Missense_Mutation p.A232V 0.08 tolerated(0.55) benign(0.003) TCGA-MX-A663-01 6 7569519 7569519 C T DSP Missense_Mutation p.S507F 0.15 probably_damaging(1) TCGA-MX-A663-01 7 100200071 100200071 C T PCOLCE 5'UTR 0.09 TCGA-MX-A663-01 7 100490027 100490027 C T ACHE Missense_Mutation p.R494Q 0.34 tolerated(0.12) benign(0.04) TCGA-MX-A663-01 7 1273299 1273299 C A UNCX Missense_Mutation p.L140M 0.12 tolerated(0.18) possibly_damaging(0.655) TCGA-MX-A663-01 7 148768363 148768363 G A ZNF786 Missense_Mutation p.L501F 0.06 tolerated(0.49) possibly_damaging(0.629) TCGA-MX-A663-01 7 73768230 73768230 C T CLIP2 Silent p.G233G 0.09 TCGA-MX-A663-01 8 116599496 116599496 T A TRPS1 Missense_Mutation p.D811V 0.06 deleterious_low_confidence(0) possibly_damaging(0.566) TCGA-MX-A663-01 8 116599497 116599497 C A TRPS1 Missense_Mutation p.D811Y 0.06 deleterious_low_confidence(0) possibly_damaging(0.844) TCGA-MX-A663-01 8 21843110 21843110 G A XPO7 Nonsense_Mutation p.W495* 0.04 TCGA-MX-A663-01 8 61743093 61743093 G C CHD7 Missense_Mutation p.M1245I 0.04 probably_damaging(0.977) TCGA-MX-A663-01 8 72935326 72935326 C T TRPA1 Missense_Mutation p.E1059K 0.27 deleterious(0) possibly_damaging(0.823) TCGA-MX-A663-01 9 109689872 109689872 C T ZNF462 Missense_Mutation p.R1227W 0.04 probably_damaging(0.996) TCGA-MX-A663-01 9 113530150 113530150 T A MUSK Missense_Mutation p.V324E 0.19 tolerated(0.06) possibly_damaging(0.715) TCGA-MX-A663-01 9 17462981 17462983 AAG - CNTLN In_Frame_Del p.E1127del 0.16 TCGA-MX-A663-01 9 21974679 21974679 G A CDKN2A Nonsense_Mutation p.Q50* 0.37 TCGA-MX-A663-01 9 33001522 33001522 T C APTX Intron 0.28 TCGA-MX-A663-01 X 17743694 17743694 G A NHS Missense_Mutation p.G469S 0.07 tolerated(0.53) probably_damaging(0.996) TCGA-MX-A666-01 10 104262421 104262423 CTT - ACTR1A 5'UTR 0.26 TCGA-MX-A666-01 10 119134140 119134140 C G PDZD8 Missense_Mutation p.G200A 0.31 deleterious(0) probably_damaging(0.999) TCGA-MX-A666-01 10 51994237 51994237 T A ASAH2 Missense_Mutation p.I255F 0.33 deleterious(0.01) benign(0.366) TCGA-MX-A666-01 11 113609953 113609953 G T ZW10 Missense_Mutation p.P579T 0.11 deleterious(0) probably_damaging(0.999) TCGA-MX-A666-01 11 3069156 3069156 G A CARS Missense_Mutation p.T34M 0.08 deleterious_low_confidence(0) possibly_damaging(0.745) TCGA-MX-A666-01 11 55063024 55063024 G T TRIM51HP RNA 0.09 TCGA-MX-A666-01 11 61511441 61511441 C T DAGLA Missense_Mutation p.P870L 0.31 tolerated_low_confidence(0.12) benign(0) TCGA-MX-A666-01 11 65350794 65350794 C T EHBP1L1 Missense_Mutation p.S884L 0.48 tolerated(0.72) benign(0.002) TCGA-MX-A666-01 11 65650856 65650856 G C CTSW Missense_Mutation p.W327C 0.04 deleterious(0) probably_damaging(1) TCGA-MX-A666-01 11 78270607 78270607 G A NARS2 Missense_Mutation p.A191V 0.07 deleterious(0) probably_damaging(0.995) TCGA-MX-A666-01 12 111729305 111729305 C T CUX2 Nonsense_Mutation p.R129* 0.29 TCGA-MX-A666-01 12 119594447 119594447 A C SRRM4 Missense_Mutation p.R560S 0.23 tolerated_low_confidence(1) unknown(0) TCGA-MX-A666-01 12 15095405 15095405 G A ARHGDIB 3'UTR 0.12 TCGA-MX-A666-01 12 59274368 59274368 A C LRIG3 Missense_Mutation p.V599G 0.07 deleterious(0) probably_damaging(0.968) TCGA-MX-A666-01 12 66909423 66909423 T C GRIP1 Missense_Mutation p.I234V 0.17 tolerated(0.44) benign(0.002) TCGA-MX-A666-01 13 46542034 46542034 C G ZC3H13 Missense_Mutation p.R1309T 0.05 unknown(0) TCGA-MX-A666-01 14 102675609 102675609 C T WDR20 Missense_Mutation p.R399W 0.09 deleterious(0) benign(0.041) TCGA-MX-A666-01 14 21623339 21623339 G A OR5AU1 Silent p.A282A 0.15 TCGA-MX-A666-01 14 64520291 64520291 T G SYNE2 Silent p.S3220S 0.16 TCGA-MX-A666-01 14 70512803 70512803 C T SLC8A3 Missense_Mutation p.R882Q 0.08 deleterious(0) probably_damaging(0.995) TCGA-MX-A666-01 14 73159912 73159912 T - DPF3 Frame_Shift_Del p.K205Sfs*67 0.14 TCGA-MX-A666-01 15 45439841 45439841 G T DUOX1 Missense_Mutation p.V845L 0.21 deleterious(0.02) possibly_damaging(0.461) TCGA-MX-A666-01 15 90161437 90161437 A C TICRR Silent p.G1005G 0.03 TCGA-MX-A666-01 16 10524630 10524630 G C ATF7IP2 Missense_Mutation p.Q51H 0.34 deleterious(0.01) possibly_damaging(0.839) TCGA-MX-A666-01 16 10525117 10525117 C G ATF7IP2 Missense_Mutation p.Q214E 0.26 deleterious(0) possibly_damaging(0.557) TCGA-MX-A666-01 16 24373228 24373228 G A CACNG3 3'UTR 0.46 TCGA-MX-A666-01 16 27374880 27374880 C T IL4R Missense_Mutation p.T736I 0.09 tolerated(0.23) benign(0.006) TCGA-MX-A666-01 16 30410521 30410521 G A ZNF48 3'UTR 0.40 TCGA-MX-A666-01 16 57697363 57697363 G A GPR56 Splice_Site p.X651_splice 0.31 TCGA-MX-A666-01 16 71163620 71163620 T G HYDIN Missense_Mutation p.T384P 0.15 probably_damaging(0.986) TCGA-MX-A666-01 16 849007 849007 C T GNG13 Missense_Mutation p.R24Q 0.38 deleterious(0) probably_damaging(0.968) TCGA-MX-A666-01 17 14683200 14683200 A G AC005863.1 RNA 0.15 TCGA-MX-A666-01 17 34233903 34233903 G C AC015849.16 RNA 0.45 TCGA-MX-A666-01 17 35307703 35307703 C T AATF Missense_Mutation p.S94F 0.26 tolerated(0.25) benign(0.06) TCGA-MX-A666-01 17 39959202 39959202 C A LEPREL4 3'UTR 0.03 TCGA-MX-A666-01 17 40035129 40035129 C A ACLY Missense_Mutation p.A772S 0.03 deleterious(0.02) benign(0.116) TCGA-MX-A666-01 17 40843909 40843911 CTT - CNTNAP1 In_Frame_Del p.F811del 0.20 TCGA-MX-A666-01 17 42477178 42477178 C T GPATCH8 Missense_Mutation p.R756Q 0.24 tolerated_low_confidence(0.09) possibly_damaging(0.885) TCGA-MX-A666-01 17 60757798 60757798 C T MRC2 Silent p.P819P 0.06 TCGA-MX-A666-01 17 7578554 7578554 A C TP53 Missense_Mutation p.Y126D 0.32 deleterious(0) probably_damaging(1) TCGA-MX-A666-01 17 7592579 7592579 C T WRAP53 Missense_Mutation p.L157F 0.10 deleterious(0.02) probably_damaging(0.999) TCGA-MX-A666-01 17 8422059 8422059 C T MYH10 Silent p.K798K 0.19 TCGA-MX-A666-01 18 19154713 19154713 G A ESCO1 Missense_Mutation p.S31F 0.04 deleterious(0) probably_damaging(0.979) TCGA-MX-A666-01 18 22056961 22056961 A C HRH4 Missense_Mutation p.K203T 0.22 deleterious(0) probably_damaging(0.979) TCGA-MX-A666-01 18 2892089 2892089 C T EMILIN2 Missense_Mutation p.T655I 0.09 deleterious(0.04) benign(0.014) TCGA-MX-A666-01 18 8379327 8379327 G T PTPRM Missense_Mutation p.A1259S 0.21 deleterious(0.04) possibly_damaging(0.901) TCGA-MX-A666-01 18 9886751 9886751 C G TXNDC2 Missense_Mutation p.S92C 0.04 tolerated(0.2) probably_damaging(0.99) TCGA-MX-A666-01 19 10610458 10610458 C G KEAP1 Missense_Mutation p.K84N 0.09 tolerated(0.46) benign(0.346) TCGA-MX-A666-01 19 11032393 11032393 C T CARM1 Missense_Mutation p.P596L 0.30 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-MX-A666-01 19 1993160 1993160 G A BTBD2 Silent p.D181D 0.10 TCGA-MX-A666-01 19 32873807 32873807 G T ZNF507 Nonsense_Mutation p.E894* 0.07 TCGA-MX-A666-01 19 32873839 32873839 G A ZNF507 Missense_Mutation p.M904I 0.10 tolerated(0.14) benign(0.38) TCGA-MX-A666-01 19 32873917 32873917 G T ZNF507 Missense_Mutation p.M930I 0.12 deleterious(0.01) possibly_damaging(0.708) TCGA-MX-A666-01 19 32873993 32873993 G A ZNF507 3'UTR 0.15 TCGA-MX-A666-01 19 32874000 32874000 G A ZNF507 3'UTR 0.14 TCGA-MX-A666-01 19 48248918 48248918 G A GLTSCR2 Silent p.L34L 0.09 TCGA-MX-A666-01 19 54678033 54678033 G A MBOAT7 Missense_Mutation p.A375V 0.12 tolerated(0.08) probably_damaging(0.936) TCGA-MX-A666-01 19 9060140 9060140 A - MUC16 Frame_Shift_Del p.F9102Lfs*18 0.26 TCGA-MX-A666-01 1 120165814 120165814 G A ZNF697 Silent p.G384G 0.43 TCGA-MX-A666-01 1 144814711 144814711 C T NBPF9 Nonsense_Mutation p.R116* 0.29 TCGA-MX-A666-01 1 149916776 149916776 G A OTUD7B Silent p.N504N 0.23 TCGA-MX-A666-01 1 152280982 152280982 C G FLG Missense_Mutation p.R2127T 0.02 benign(0.227) TCGA-MX-A666-01 1 152324997 152324997 T G FLG2 Missense_Mutation p.Q1755H 0.05 benign(0.216) TCGA-MX-A666-01 1 156020264 156020264 G A UBQLN4 Missense_Mutation p.R187W 0.38 tolerated(0.17) probably_damaging(0.982) TCGA-MX-A666-01 1 156437998 156437998 A G MEF2D Silent p.R447R 0.07 TCGA-MX-A666-01 1 157504568 157504568 T C FCRL5 Missense_Mutation p.Q506R 0.10 tolerated(0.47) benign(0.075) TCGA-MX-A666-01 1 157668305 157668305 G A FCRL3 Missense_Mutation p.T56I 0.23 tolerated(0.77) benign(0.017) TCGA-MX-A666-01 1 158262648 158262648 C A CD1C Missense_Mutation p.D291E 0.21 deleterious(0.01) possibly_damaging(0.772) TCGA-MX-A666-01 1 235613579 235613579 G A B3GALNT2 Missense_Mutation p.T482M 0.10 tolerated(0.29) benign(0.004) TCGA-MX-A666-01 1 55563749 55563749 C T USP24 Missense_Mutation p.R1821H 0.37 deleterious(0) possibly_damaging(0.879) TCGA-MX-A666-01 1 59248032 59248032 G A JUN Silent p.G237G 0.08 TCGA-MX-A666-01 20 10258375 10258376 - T SNAP25 Splice_Site p.X38_splice 0.09 TCGA-MX-A666-01 20 25456963 25456963 C T NINL Silent p.R988R 0.04 TCGA-MX-A666-01 20 3781713 3781713 G C CDC25B Missense_Mutation p.Q226H 0.04 tolerated(0.1) possibly_damaging(0.477) TCGA-MX-A666-01 20 49562398 49562398 C A DPM1 Missense_Mutation p.D120Y 0.39 deleterious(0) probably_damaging(0.999) TCGA-MX-A666-01 20 49620486 49620486 G A KCNG1 3'UTR 0.14 TCGA-MX-A666-01 20 49620924 49620924 G A KCNG1 Silent p.I398I 0.15 TCGA-MX-A666-01 20 50704952 50704952 C T ZFP64 Missense_Mutation p.V206I 0.22 tolerated(0.27) probably_damaging(0.995) TCGA-MX-A666-01 20 60889871 60889871 C T LAMA5 Missense_Mutation p.R2727Q 0.05 benign(0.062) TCGA-MX-A666-01 21 34924956 34924956 A C SON Missense_Mutation p.Y1140S 0.17 benign(0.403) TCGA-MX-A666-01 22 21989386 21989386 A G CCDC116 Missense_Mutation p.D345G 0.25 tolerated(0.15) benign(0.036) TCGA-MX-A666-01 22 31345746 31345746 C A MORC2 Silent p.G41G 0.06 TCGA-MX-A666-01 22 38565319 38565319 G A PLA2G6 Missense_Mutation p.R39W 0.28 deleterious(0) possibly_damaging(0.677) TCGA-MX-A666-01 22 39122319 39122319 C T GTPBP1 Silent p.D425D 0.11 TCGA-MX-A666-01 2 163130429 163130429 T C IFIH1 Missense_Mutation p.K777R 0.29 tolerated(0.06) possibly_damaging(0.58) TCGA-MX-A666-01 2 179654102 179654102 T C TTN Silent p.Q687Q 0.21 TCGA-MX-A666-01 2 240969025 240969025 G A OR6B2 Silent p.I274I 0.08 TCGA-MX-A666-01 2 61570966 61570966 A T USP34 Missense_Mutation p.H828Q 0.27 deleterious(0.01) benign(0.058) TCGA-MX-A666-01 2 74699777 74699777 G A MRPL53 Missense_Mutation p.A4V 0.10 tolerated(0.15) benign(0.063) TCGA-MX-A666-01 3 101535732 101535732 G A NXPE3 Missense_Mutation p.R339H 0.20 tolerated(0.69) benign(0.004) TCGA-MX-A666-01 3 126071070 126071070 C T KLF15 Silent p.S232S 0.47 TCGA-MX-A666-01 3 135870265 135870265 G A MSL2 Silent p.N486N 0.07 TCGA-MX-A666-01 3 182597335 182597335 C A ATP11B Missense_Mutation p.S768R 0.06 deleterious(0) probably_damaging(0.993) TCGA-MX-A666-01 3 189526151 189526151 G A TP63 Missense_Mutation p.A139T 0.21 tolerated(0.4) benign(0.004) TCGA-MX-A666-01 3 195518251 195518251 T A MUC4 Missense_Mutation p.N67I 0.09 unknown(0) TCGA-MX-A666-01 3 3888191 3888191 C A LRRN1 Missense_Mutation p.D622E 0.14 tolerated(1) benign(0.001) TCGA-MX-A666-01 3 72861859 72861859 C T SHQ1 Missense_Mutation p.M341I 0.06 tolerated(0.31) benign(0.002) TCGA-MX-A666-01 4 122749131 122749131 A C BBS7 Intron 0.25 TCGA-MX-A666-01 4 178354372 178354372 A C AGA Missense_Mutation p.S312R 0.15 tolerated(0.26) benign(0.015) TCGA-MX-A666-01 4 3449701 3449701 C T HGFAC Silent p.P525P 0.27 TCGA-MX-A666-01 4 39900144 39900145 - T PDS5A Frame_Shift_Ins p.N545Kfs*4 0.38 TCGA-MX-A666-01 4 629696 629696 A G PDE6B Missense_Mutation p.T217A 0.13 tolerated(0.3) benign(0.003) TCGA-MX-A666-01 4 70152495 70152495 C G UGT2B28 Missense_Mutation p.S299C 0.09 deleterious(0) probably_damaging(1) TCGA-MX-A666-01 4 77700454 77700454 G C SHROOM3 3'UTR 0.36 TCGA-MX-A666-01 4 786246 786246 G A CPLX1 Missense_Mutation p.A61V 0.15 tolerated(0.43) benign(0.001) TCGA-MX-A666-01 4 83349437 83349438 - AC HNRNPDL Frame_Shift_Ins p.D203Lfs*7 0.09 TCGA-MX-A666-01 5 112179026 112179026 G T APC Nonsense_Mutation p.E2579* 0.35 TCGA-MX-A666-01 5 140202678 140202678 G A PCDHA5 Missense_Mutation p.V440M 0.07 tolerated_low_confidence(0.09) possibly_damaging(0.694) TCGA-MX-A666-01 5 140257079 140257079 G T PCDHA12 Missense_Mutation p.Q674H 0.17 deleterious_low_confidence(0.01) benign(0.059) TCGA-MX-A666-01 5 176638107 176638107 C A NSD1 Missense_Mutation p.P903T 0.12 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-MX-A666-01 5 21459694 21459694 G T GUSBP1 Splice_Site 0.05 TCGA-MX-A666-01 5 37016206 37016206 T G NIPBL Silent p.L1570L 0.06 TCGA-MX-A666-01 5 665401 665401 G A TPPP Missense_Mutation p.S159L 0.40 tolerated(0.15) benign(0.016) TCGA-MX-A666-01 5 94922283 94922283 C G ARSK Missense_Mutation p.I239M 0.06 deleterious(0) probably_damaging(0.925) TCGA-MX-A666-01 5 94922300 94922300 C T ARSK Missense_Mutation p.S245L 0.07 tolerated(0.36) benign(0.004) TCGA-MX-A666-01 6 10924818 10924818 G T SYCP2L Missense_Mutation p.D388Y 0.24 deleterious(0) probably_damaging(0.982) TCGA-MX-A666-01 6 155469283 155469283 G A TIAM2 Missense_Mutation p.V615I 0.27 tolerated(1) benign(0.001) TCGA-MX-A666-01 6 31608982 31608982 G C BAG6 Missense_Mutation p.L866V 0.05 deleterious(0) probably_damaging(0.952) TCGA-MX-A666-01 6 32947863 32947863 G T BRD2 Missense_Mutation p.E735D 0.19 deleterious(0) benign(0.217) TCGA-MX-A666-01 6 44374102 44374103 - A CDC5L Frame_Shift_Ins p.R269Kfs*6 0.13 TCGA-MX-A666-01 6 53785554 53785554 G C LRRC1 Missense_Mutation p.E471Q 0.21 tolerated(0.07) benign(0.004) TCGA-MX-A666-01 7 110763604 110763604 T A LRRN3 Missense_Mutation p.V259D 0.06 deleterious(0) possibly_damaging(0.835) TCGA-MX-A666-01 7 1197295 1197295 C A ZFAND2A Missense_Mutation p.Q49H 0.03 deleterious(0) possibly_damaging(0.667) TCGA-MX-A666-01 7 121623786 121623786 C T PTPRZ1 Silent p.Y229Y 0.10 TCGA-MX-A666-01 7 127235723 127235723 C T FSCN3 Silent p.D169D 0.21 TCGA-MX-A666-01 7 128415116 128415116 G C OPN1SW Missense_Mutation p.H149D 0.11 deleterious(0) probably_damaging(0.962) TCGA-MX-A666-01 7 45725561 45725561 G A ADCY1 Missense_Mutation p.V692M 0.07 deleterious(0.02) probably_damaging(0.999) TCGA-MX-A666-01 8 101076146 101076146 C A RGS22 Missense_Mutation p.D284Y 0.10 deleterious(0) probably_damaging(1) TCGA-MX-A666-01 8 11995822 11995822 C T USP17L2 Missense_Mutation p.A150T 0.08 tolerated(0.36) benign(0.052) TCGA-MX-A666-01 8 125072955 125072955 G A FER1L6 Intron 0.06 TCGA-MX-A666-01 8 56717540 56717540 C T TGS1 Silent p.D696D 0.09 TCGA-MX-A666-01 8 62479859 62479859 C G ASPH Missense_Mutation p.E390Q 0.10 deleterious(0) probably_damaging(0.998) TCGA-MX-A666-01 8 82439346 82439346 G A FABP12 Missense_Mutation p.T86I 0.10 tolerated(0.05) benign(0.043) TCGA-MX-A666-01 8 95272701 95272701 C T GEM Missense_Mutation p.G11S 0.26 tolerated(0.5) benign(0) TCGA-MX-A666-01 8 95888354 95888354 A C INTS8 Missense_Mutation p.K914T 0.06 deleterious(0) possibly_damaging(0.544) TCGA-MX-A666-01 8 97274448 97274448 G A PTDSS1 Splice_Site p.X60_splice 0.26 TCGA-MX-A666-01 9 117139520 117139520 G A AKNA Silent p.V189V 0.09 TCGA-MX-A666-01 9 130219654 130219654 G A LRSAM1 Silent p.L78L 0.05 TCGA-MX-A666-01 9 140093497 140093497 C A TPRN Missense_Mutation p.G556V 0.07 deleterious(0) probably_damaging(1) TCGA-MX-A666-01 9 37126557 37126557 C A ZCCHC7 Silent p.V76V 0.08 TCGA-MX-A666-01 9 5757430 5757430 C T KIAA1432 Silent p.I657I 0.45 TCGA-MX-A666-01 9 93375739 93375739 T C DIRAS2 Missense_Mutation p.D124G 0.14 deleterious(0) probably_damaging(1) TCGA-MX-A666-01 X 104464113 104464113 C T TEX13A Missense_Mutation p.E255K 0.17 tolerated(1) possibly_damaging(0.636) TCGA-MX-A666-01 X 117819877 117819877 G A DOCK11 3'UTR 0.21 TCGA-MX-A666-01 X 129149180 129149180 C - BCORL1 Frame_Shift_Del p.A811Efs*42 0.35 TCGA-MX-A666-01 X 151996296 151996296 A C CETN2 3'UTR 0.20 TCGA-MX-A666-01 X 152960076 152960076 G A SLC6A8 Silent p.P528P 0.17 TCGA-MX-A666-01 X 69719108 69719108 A G DLG3 Silent p.K651K 0.58 TCGA-MX-A666-01 X 73960055 73960055 T C KIAA2022 Missense_Mutation p.K1446R 0.56 deleterious(0) probably_damaging(0.999) TCGA-MX-A666-01 X 77913459 77913459 G T ZCCHC5 Silent p.P153P 0.14 TCGA-R5-A7O7-01 10 101556999 101556999 C T ABCC2 Missense_Mutation p.R260W 0.37 tolerated(0.1) benign(0.022) TCGA-R5-A7O7-01 10 108432662 108432662 G C SORCS1 Silent p.A674A 0.28 TCGA-R5-A7O7-01 10 61832826 61832826 C A ANK3 Nonsense_Mutation p.E2605* 0.21 TCGA-R5-A7O7-01 10 89720799 89720802 TACT - PTEN Frame_Shift_Del p.T319* 0.34 TCGA-R5-A7O7-01 11 102100820 102100820 C G YAP1 3'UTR 0.21 TCGA-R5-A7O7-01 11 123624508 123624508 G A OR6X1 Missense_Mutation p.A240V 0.22 tolerated(0.2) benign(0.363) TCGA-R5-A7O7-01 11 56380155 56380155 G T OR5M1 Missense_Mutation p.A275E 0.19 deleterious(0) probably_damaging(0.914) TCGA-R5-A7O7-01 11 65380601 65380601 G A MAP3K11 Silent p.R209R 0.29 TCGA-R5-A7O7-01 12 105582196 105582196 G A APPL2 Missense_Mutation p.R503W 0.18 deleterious(0) probably_damaging(0.993) TCGA-R5-A7O7-01 12 118105460 118105460 G T KSR2 Silent p.A330A 0.20 TCGA-R5-A7O7-01 12 20787855 20787855 C T PDE3A Silent p.T622T 0.17 TCGA-R5-A7O7-01 12 40713965 40713965 T G LRRK2 Missense_Mutation p.L1668R 0.06 deleterious(0) probably_damaging(0.982) TCGA-R5-A7O7-01 12 68715182 68715182 T C MDM1 Missense_Mutation p.Q317R 0.08 deleterious(0) probably_damaging(0.986) TCGA-R5-A7O7-01 13 110835554 110835554 G T COL4A1 Missense_Mutation p.S656Y 0.18 benign(0.034) TCGA-R5-A7O7-01 13 111130506 111130506 G T COL4A2 Missense_Mutation p.R861L 0.21 possibly_damaging(0.76) TCGA-R5-A7O7-01 13 22246137 22246137 G A FGF9 Missense_Mutation p.S29N 0.20 tolerated(0.1) benign(0) TCGA-R5-A7O7-01 13 33629201 33629201 G A KL Missense_Mutation p.V450M 0.17 deleterious(0) probably_damaging(0.941) TCGA-R5-A7O7-01 14 23887269 23887271 GAG - MYH7 Intron 0.13 TCGA-R5-A7O7-01 14 28734125 28734125 C T BNIP3P1 RNA 0.10 TCGA-R5-A7O7-01 14 45564569 45564569 C A PRPF39 Missense_Mutation p.Q43K 0.10 tolerated(0.64) benign(0.066) TCGA-R5-A7O7-01 14 62542008 62542008 C T SYT16 Missense_Mutation p.R298C 0.15 tolerated(0.05) benign(0.009) TCGA-R5-A7O7-01 15 22954298 22954298 C G CYFIP1 Missense_Mutation p.A483G 0.21 deleterious(0.05) benign(0.099) TCGA-R5-A7O7-01 15 42738805 42738805 T C ZNF106 Missense_Mutation p.K1040E 0.29 deleterious(0) benign(0.174) TCGA-R5-A7O7-01 15 43103957 43103957 G A TTBK2 Missense_Mutation p.L209F 0.21 deleterious(0.01) probably_damaging(1) TCGA-R5-A7O7-01 16 1251724 1251724 C T CACNA1H Missense_Mutation p.T425M 0.17 deleterious(0) probably_damaging(0.998) TCGA-R5-A7O7-01 16 15100402 15100402 G A PDXDC1 Missense_Mutation p.A181T 0.22 tolerated(0.15) possibly_damaging(0.794) TCGA-R5-A7O7-01 16 20043340 20043340 C A GPR139 Missense_Mutation p.R260L 0.16 deleterious(0) benign(0.022) TCGA-R5-A7O7-01 16 21073961 21073961 C T DNAH3 Missense_Mutation p.E1188K 0.13 deleterious(0) probably_damaging(0.974) TCGA-R5-A7O7-01 16 24105487 24105487 G T PRKCB Missense_Mutation p.Q230H 0.22 tolerated(0.2) benign(0.005) TCGA-R5-A7O7-01 16 3573209 3573209 G C CLUAP1 Missense_Mutation p.Q255H 0.27 tolerated(0.56) benign(0.008) TCGA-R5-A7O7-01 17 26817608 26817608 C T SLC13A2 Missense_Mutation p.P172L 0.10 tolerated(1) benign(0) TCGA-R5-A7O7-01 17 7365275 7365275 T C ZBTB4 Missense_Mutation p.K1009R 0.12 possibly_damaging(0.899) TCGA-R5-A7O7-01 17 7577139 7577139 G C TP53 Missense_Mutation p.R267G 0.50 deleterious(0) probably_damaging(0.994) TCGA-R5-A7O7-01 17 79477609 79477609 C G ACTG1 3'UTR 0.20 TCGA-R5-A7O7-01 17 8139248 8139248 G A CTC1 Silent p.P369P 0.33 TCGA-R5-A7O7-01 18 12452387 12452387 G A SPIRE1 Missense_Mutation p.R627W 0.18 deleterious(0) probably_damaging(0.975) TCGA-R5-A7O7-01 18 14787072 14787072 C T ANKRD30B Silent p.D569D 0.14 TCGA-R5-A7O7-01 18 25616486 25616486 A G CDH2 Intron 0.11 TCGA-R5-A7O7-01 18 347195 347195 C T COLEC12 Missense_Mutation p.G143R 0.24 deleterious(0.01) possibly_damaging(0.859) TCGA-R5-A7O7-01 18 5891853 5891853 C T TMEM200C Silent p.A70A 0.11 TCGA-R5-A7O7-01 18 65180462 65180462 T G DSEL Missense_Mutation p.S472R 0.28 deleterious(0.01) probably_damaging(0.933) TCGA-R5-A7O7-01 19 10531600 10531600 C T PDE4A Missense_Mutation p.R54C 0.36 tolerated_low_confidence(0.09) possibly_damaging(0.732) TCGA-R5-A7O7-01 19 12060014 12060014 G T ZNF700 Missense_Mutation p.C392F 0.12 deleterious(0) probably_damaging(0.999) TCGA-R5-A7O7-01 19 15278129 15278129 C T NOTCH3 Missense_Mutation p.A1765T 0.16 tolerated(0.17) benign(0.079) TCGA-R5-A7O7-01 19 29698917 29698917 A C UQCRFS1 Silent p.T121T 0.27 TCGA-R5-A7O7-01 19 33693821 33693821 C T LRP3 Silent p.P63P 0.33 TCGA-R5-A7O7-01 19 36633605 36633605 C T CAPNS1 Missense_Mutation p.R99W 0.20 tolerated(0.12) benign(0.066) TCGA-R5-A7O7-01 19 53057674 53057674 G A ZNF808 Missense_Mutation p.R502H 0.21 tolerated(0.18) benign(0.011) TCGA-R5-A7O7-01 19 55264030 55264030 G T KIR2DL3 3'UTR 0.27 TCGA-R5-A7O7-01 1 103428237 103428237 G A COL11A1 Missense_Mutation p.P999L 0.21 unknown(0) TCGA-R5-A7O7-01 1 158390022 158390022 A G OR10K2 Missense_Mutation p.L212S 0.25 tolerated(0.37) benign(0.044) TCGA-R5-A7O7-01 1 158450497 158450497 T C OR10R2 Missense_Mutation p.F277S 0.09 tolerated(0.15) benign(0.034) TCGA-R5-A7O7-01 1 162740150 162740150 C G DDR2 Missense_Mutation p.S451C 0.08 tolerated(0.05) possibly_damaging(0.469) TCGA-R5-A7O7-01 1 176679246 176679246 T G PAPPA2 Silent p.A1195A 0.28 TCGA-R5-A7O7-01 1 19447901 19447902 - T UBR4 Frame_Shift_Ins p.S3308Kfs*6 0.11 TCGA-R5-A7O7-01 1 203798644 203798644 C T ZC3H11A Nonsense_Mutation p.Q122* 0.10 TCGA-R5-A7O7-01 1 227954659 227954659 G T SNAP47 Splice_Site p.X375_splice 0.13 TCGA-R5-A7O7-01 1 248039272 248039272 G T TRIM58 Missense_Mutation p.Q314H 0.09 tolerated(0.09) benign(0.021) TCGA-R5-A7O7-01 1 248112491 248112491 C A OR2L8 Missense_Mutation p.A111E 0.15 tolerated(0.05) benign(0.022) TCGA-R5-A7O7-01 1 248525068 248525068 C G OR2T4 Silent p.V62V 0.32 TCGA-R5-A7O7-01 1 31899506 31899506 T C SERINC2 Missense_Mutation p.F215L 0.16 tolerated(1) benign(0.213) TCGA-R5-A7O7-01 1 36923582 36923582 A C MRPS15 Missense_Mutation p.I129S 0.18 tolerated(0.07) possibly_damaging(0.669) TCGA-R5-A7O7-01 1 57351732 57351732 T C C8A Missense_Mutation p.Y330H 0.07 deleterious(0) probably_damaging(1) TCGA-R5-A7O7-01 1 74648525 74648525 G A LRRIQ3 Silent p.T90T 0.15 TCGA-R5-A7O7-01 1 8399614 8399614 C T SLC45A1 Silent p.L612L 0.12 TCGA-R5-A7O7-01 20 1277002 1277002 G A SNPH 5'UTR 0.14 TCGA-R5-A7O7-01 21 27086965 27086965 C T JAM2 3'Flank 0.08 TCGA-R5-A7O7-01 21 34889832 34889832 C G GART Missense_Mutation p.D596H 0.25 deleterious(0.04) benign(0.002) TCGA-R5-A7O7-01 21 41551011 41551011 A C DSCAM Missense_Mutation p.D930E 0.12 tolerated(0.33) benign(0.002) TCGA-R5-A7O7-01 21 46842338 46842338 G T COL18A1-AS1 RNA 0.14 TCGA-R5-A7O7-01 2 152527729 152527729 G A NEB Silent p.D1438D 0.36 TCGA-R5-A7O7-01 2 161349815 161349815 C A RBMS1 Missense_Mutation p.Q20H 0.22 tolerated_low_confidence(1) benign(0) TCGA-R5-A7O7-01 2 179613084 179613084 C A TTN Intron 0.07 TCGA-R5-A7O7-01 2 189933587 189933587 C T COL5A2 Silent p.A394A 0.15 TCGA-R5-A7O7-01 2 197631305 197631305 G A GTF3C3 Missense_Mutation p.P841L 0.12 deleterious(0.02) benign(0.194) TCGA-R5-A7O7-01 2 215823130 215823130 G T ABCA12 Silent p.G1996G 0.22 TCGA-R5-A7O7-01 2 217124175 217124175 C A MARCH4 Missense_Mutation p.A365S 0.28 tolerated(0.56) benign(0.017) TCGA-R5-A7O7-01 2 225670000 225670000 C T DOCK10 Missense_Mutation p.R1325Q 0.13 tolerated(0.12) probably_damaging(0.997) TCGA-R5-A7O7-01 2 74128460 74128460 G A ACTG2 Missense_Mutation p.A8T 0.20 tolerated_low_confidence(0.06) benign(0.384) TCGA-R5-A7O7-01 3 142681569 142681569 G A PAQR9 Missense_Mutation p.R204C 0.14 tolerated(0.19) benign(0.001) TCGA-R5-A7O7-01 3 173993198 173993198 T C NLGN1 Missense_Mutation p.F247S 0.13 tolerated(0.41) benign(0.008) TCGA-R5-A7O7-01 3 19574898 19574898 G A KCNH8 Silent p.L877L 0.06 TCGA-R5-A7O7-01 3 19575483 19575483 G C KCNH8 Missense_Mutation p.W1072C 0.11 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-R5-A7O7-01 3 19575605 19575605 G T KCNH8 3'UTR 0.09 TCGA-R5-A7O7-01 3 38601865 38601865 C T SCN5A Missense_Mutation p.V1340I 0.22 deleterious(0) probably_damaging(0.996) TCGA-R5-A7O7-01 3 44611750 44611750 A G ZKSCAN7 Missense_Mutation p.Y383C 0.22 tolerated(0.11) benign(0.073) TCGA-R5-A7O7-01 3 68782249 68782249 G A FAM19A4 3'UTR 0.27 TCGA-R5-A7O7-01 4 123301348 123301348 G A ADAD1 Missense_Mutation p.E42K 0.21 tolerated(0.19) benign(0.066) TCGA-R5-A7O7-01 4 186578619 186578619 C T SORBS2 Missense_Mutation p.G176R 0.17 deleterious(0) probably_damaging(1) TCGA-R5-A7O7-01 5 129070703 129070703 G A ADAMTS19 Missense_Mutation p.E1125K 0.13 tolerated(0.07) possibly_damaging(0.665) TCGA-R5-A7O7-01 5 13830781 13830781 A T DNAH5 Missense_Mutation p.C1996S 0.09 benign(0.415) TCGA-R5-A7O7-01 5 138655053 138655053 G C MATR3 Missense_Mutation p.D489H 0.09 tolerated(0.07) benign(0.186) TCGA-R5-A7O7-01 5 140531159 140531159 G A PCDHB6 Missense_Mutation p.D441N 0.37 deleterious(0) possibly_damaging(0.482) TCGA-R5-A7O7-01 5 140718670 140718670 C T PCDHGA2 Silent p.F44F 0.13 TCGA-R5-A7O7-01 5 146781177 146781177 C T DPYSL3 Silent p.A412A 0.19 TCGA-R5-A7O7-01 5 177468735 177468735 G T FAM153C Missense_Mutation p.V59F 0.21 tolerated_low_confidence(0.07) benign(0.053) TCGA-R5-A7O7-01 5 37169284 37169284 G A C5orf42 Missense_Mutation p.A2281V 0.05 tolerated(0.46) benign(0.004) TCGA-R5-A7O7-01 5 479974 479974 C T SLC9A3 Missense_Mutation p.D542N 0.09 deleterious(0) possibly_damaging(0.874) TCGA-R5-A7O7-01 6 101095278 101095278 C T ASCC3 Missense_Mutation p.R1101H 0.20 tolerated(0.09) possibly_damaging(0.735) TCGA-R5-A7O7-01 6 106547387 106547387 T C PRDM1 Silent p.L208L 0.19 TCGA-R5-A7O7-01 6 143074667 143074667 C T HIVEP2 Missense_Mutation p.M2306I 0.29 tolerated(0.23) benign(0.017) TCGA-R5-A7O7-01 6 149395000 149395000 G A UST Silent p.T323T 0.17 TCGA-R5-A7O7-01 6 152534788 152534788 C T SYNE1 Missense_Mutation p.G7485R 0.14 probably_damaging(0.997) TCGA-R5-A7O7-01 6 152804240 152804240 G A SYNE1 Missense_Mutation p.R444W 0.22 possibly_damaging(0.696) TCGA-R5-A7O7-01 6 26638628 26638628 A C ZNF322 Missense_Mutation p.F52V 0.09 deleterious(0) benign(0.038) TCGA-R5-A7O7-01 6 29455069 29455069 A G MAS1L Missense_Mutation p.I204T 0.14 tolerated(0.11) benign(0.007) TCGA-R5-A7O7-01 6 34949611 34949611 C T ANKS1A Nonsense_Mutation p.R194* 0.11 TCGA-R5-A7O7-01 6 56494187 56494187 C A DST Nonsense_Mutation p.E909* 0.19 TCGA-R5-A7O7-01 7 100839165 100839165 C T MOGAT3 3'UTR 0.22 TCGA-R5-A7O7-01 7 107204405 107204405 A C COG5 Missense_Mutation p.D10E 0.27 tolerated_low_confidence(0.11) possibly_damaging(0.621) TCGA-R5-A7O7-01 7 129825119 129825119 C T TMEM209 Silent p.K288K 0.21 TCGA-R5-A7O7-01 7 134552501 134552501 G A CALD1 Missense_Mutation p.R6H 0.36 deleterious(0) unknown(0) TCGA-R5-A7O7-01 7 143002038 143002038 C T CASP2 Silent p.N411N 0.22 TCGA-R5-A7O7-01 7 151962186 151962186 G A KMT2C Missense_Mutation p.A374V 0.05 benign(0.012) TCGA-R5-A7O7-01 7 28996212 28996212 A G AC005013.5 5'Flank 0.17 TCGA-R5-A7O7-01 7 35288323 35288323 C T TBX20 Missense_Mutation p.V171M 0.18 deleterious(0) probably_damaging(0.997) TCGA-R5-A7O7-01 7 35293169 35293169 G A TBX20 Silent p.A21A 0.11 TCGA-R5-A7O7-01 7 39503783 39503783 A C POU6F2 Missense_Mutation p.H525P 0.04 deleterious_low_confidence(0.01) unknown(0) TCGA-R5-A7O7-01 7 51203910 51203910 C T COBL Missense_Mutation p.R301Q 0.08 deleterious(0.02) possibly_damaging(0.899) TCGA-R5-A7O7-01 7 76027010 76027010 G A SRCRB4D Silent p.G231G 0.39 TCGA-R5-A7O7-01 8 106814329 106814329 C A ZFPM2 Silent p.P673P 0.21 TCGA-R5-A7O7-01 8 128753157 128753157 G A MYC Missense_Mutation p.E440K 0.10 deleterious(0.01) benign(0.297) TCGA-R5-A7O7-01 8 131104358 131104358 T C ASAP1 Silent p.L811L 0.14 TCGA-R5-A7O7-01 8 133980206 133980206 C T TG Missense_Mutation p.R1952W 0.33 deleterious(0.03) possibly_damaging(0.8) TCGA-R5-A7O7-01 8 140714996 140714996 G A KCNK9 Silent p.F80F 0.12 TCGA-R5-A7O7-01 8 143614735 143614735 C T BAI1 Missense_Mutation p.R1160C 0.13 deleterious(0) possibly_damaging(0.898) TCGA-R5-A7O7-01 8 145757770 145757770 C T ARHGAP39 Missense_Mutation p.D967N 0.16 deleterious(0) benign(0.428) TCGA-R5-A7O7-01 8 17843544 17843544 T G PCM1 Missense_Mutation p.I1453R 0.24 tolerated(0.29) benign(0.011) TCGA-R5-A7O7-01 8 42823234 42823234 A G HOOK3 Silent p.L333L 0.13 TCGA-R5-A7O7-01 8 42852738 42852738 A C HOOK3 Missense_Mutation p.E526D 0.76 tolerated(1) probably_damaging(0.992) TCGA-R5-A7O7-01 8 42852746 42852746 A T HOOK3 Missense_Mutation p.K529I 0.74 deleterious(0) possibly_damaging(0.845) TCGA-R5-A7O7-01 8 6679544 6679544 C T XKR5 RNA 0.17 TCGA-R5-A7O7-01 8 6682776 6682776 C G XKR5 RNA 0.10 TCGA-R5-A7O7-01 8 72756341 72756341 C T MSC Missense_Mutation p.A25T 0.16 tolerated_low_confidence(0.28) benign(0.003) TCGA-R5-A7O7-01 8 77618657 77618657 C T ZFHX4 Silent p.V778V 0.47 TCGA-R5-A7O7-01 8 92307918 92307918 G A SLC26A7 Missense_Mutation p.G155E 0.17 tolerated(0.05) probably_damaging(1) TCGA-R5-A7O7-01 9 101749583 101749583 T G COL15A1 Missense_Mutation p.L219R 0.12 deleterious(0) possibly_damaging(0.557) TCGA-R5-A7O7-01 9 139840619 139840619 G A C8G Silent p.A143A 0.23 TCGA-R5-A7O7-01 9 21971138 21971138 C A CDKN2A Missense_Mutation p.D74Y 0.33 deleterious(0) probably_damaging(1) TCGA-R5-A7O7-01 9 2639982 2639982 G A VLDLR Splice_Site p.X109_splice 0.27 TCGA-R5-A7O7-01 9 73230949 73230949 C A TRPM3 Nonsense_Mutation p.E789* 0.30 TCGA-R5-A7O7-01 9 84532037 84532037 C T SPATA31D5P RNA 0.20 TCGA-R5-A7O7-01 X 101382431 101382431 T A TCEAL2 Missense_Mutation p.F210Y 0.21 tolerated(0.54) benign(0.153) TCGA-R5-A7O7-01 X 136113448 136113448 C T GPR101 Missense_Mutation p.R129H 0.18 deleterious(0) probably_damaging(0.998) TCGA-R5-A7O7-01 X 139865920 139865920 C T CDR1 Silent p.K204K 0.20 TCGA-R5-A7O7-01 X 144906326 144906326 C T SLITRK2 Nonsense_Mutation p.Q795* 0.17 TCGA-R5-A7O7-01 X 147744269 147744269 A G AFF2 Missense_Mutation p.T341A 0.28 deleterious(0.01) probably_damaging(0.987) TCGA-R5-A7O7-01 X 37028540 37028540 G A FAM47C Missense_Mutation p.R686H 0.38 tolerated(0.21) benign(0.008) TCGA-R5-A7O7-01 X 53240002 53240002 G T KDM5C Missense_Mutation p.P480Q 0.32 deleterious(0) probably_damaging(0.998) TCGA-R5-A7O7-01 X 595377 595377 G A SHOX Missense_Mutation p.R101H 0.12 deleterious(0.01) benign(0.022) TCGA-R5-A7O7-01 X 71933705 71933705 C T PHKA1 Silent p.G8G 0.52 TCGA-R5-A7O7-01 X 79942372 79942372 A C BRWD3 Missense_Mutation p.L1332R 0.19 tolerated(0.26) benign(0.091) TCGA-R5-A7O7-01 X 83128280 83128280 T C CYLC1 Silent p.S188S 0.21 TCGA-R5-A7O7-01 X 86868966 86868966 G A KLHL4 Missense_Mutation p.R170H 0.29 tolerated(0.2) benign(0.002) TCGA-R5-A7ZE-01 10 103292069 103292069 G A BTRC Nonsense_Mutation p.W286* 0.06 TCGA-R5-A7ZE-01 10 103918991 103919002 AGCAGCAGTAGC - NOLC1 In_Frame_Del p.S224_S227del 0.18 TCGA-R5-A7ZE-01 10 24832088 24832088 G A KIAA1217 Missense_Mutation p.E1297K 0.12 tolerated(0.29) possibly_damaging(0.493) TCGA-R5-A7ZE-01 10 25886814 25886814 C A GPR158 Silent p.S753S 0.08 TCGA-R5-A7ZE-01 10 27702139 27702139 G A PTCHD3 Silent p.L347L 0.15 TCGA-R5-A7ZE-01 10 28149595 28149595 C T ARMC4 Missense_Mutation p.A994T 0.14 deleterious(0) benign(0.212) TCGA-R5-A7ZE-01 10 55566721 55566721 G A PCDH15 Missense_Mutation p.T1555I 0.20 deleterious_low_confidence(0) benign(0.139) TCGA-R5-A7ZE-01 10 55568896 55568896 G A PCDH15 Silent p.S572S 0.10 TCGA-R5-A7ZE-01 10 55912910 55912910 A C PCDH15 Silent p.T578T 0.47 TCGA-R5-A7ZE-01 10 82036245 82036245 G A MAT1A Missense_Mutation p.R219C 0.17 deleterious(0) probably_damaging(0.963) TCGA-R5-A7ZE-01 10 87406950 87406950 C G GRID1 Intron 0.12 TCGA-R5-A7ZE-01 10 92508605 92508605 T G HTR7 Missense_Mutation p.E429A 0.14 tolerated(0.12) benign(0.026) TCGA-R5-A7ZE-01 10 96044673 96044673 A G PLCE1 Silent p.A1662A 0.07 TCGA-R5-A7ZE-01 11 1018202 1018203 - T MUC6 Frame_Shift_Ins p.H1533Qfs*4 0.23 TCGA-R5-A7ZE-01 11 111156703 111156703 T A C11orf53 Missense_Mutation p.L212H 0.15 deleterious(0) probably_damaging(0.989) TCGA-R5-A7ZE-01 11 22363147 22363147 G C SLC17A6 Missense_Mutation p.E54Q 0.13 tolerated(0.36) benign(0.006) TCGA-R5-A7ZE-01 11 33564202 33564202 C G KIAA1549L Missense_Mutation p.L68V 0.08 tolerated_low_confidence(0.19) benign(0.142) TCGA-R5-A7ZE-01 11 36248918 36248918 G A LDLRAD3 Silent p.A246A 0.19 TCGA-R5-A7ZE-01 11 48346846 48346846 T C OR4C3 Silent p.S118S 0.12 TCGA-R5-A7ZE-01 11 49974091 49974091 A C OR4C13 Silent p.G39G 0.19 TCGA-R5-A7ZE-01 11 55032400 55032400 A G TRIM48 Silent p.Q23Q 0.09 TCGA-R5-A7ZE-01 11 55944805 55944805 T G OR5J2 Missense_Mutation p.F238V 0.29 deleterious(0.01) possibly_damaging(0.896) TCGA-R5-A7ZE-01 11 66468323 66468323 G A SPTBN2 Missense_Mutation p.R1083C 0.11 deleterious(0) probably_damaging(0.998) TCGA-R5-A7ZE-01 11 837509 837509 G C CD151 Missense_Mutation p.W169S 0.07 deleterious(0) probably_damaging(0.983) TCGA-R5-A7ZE-01 12 100453651 100453651 G A UHRF1BP1L Nonsense_Mutation p.R574* 0.30 TCGA-R5-A7ZE-01 12 107371941 107371941 A C MTERFD3 Missense_Mutation p.N184K 0.35 deleterious(0) probably_damaging(0.962) TCGA-R5-A7ZE-01 12 107371944 107371944 C A MTERFD3 Missense_Mutation p.K183N 0.34 tolerated(0.22) benign(0.016) TCGA-R5-A7ZE-01 12 43944900 43944900 A T ADAMTS20 Missense_Mutation p.F89I 0.20 deleterious(0) probably_damaging(1) TCGA-R5-A7ZE-01 12 49412436 49412436 C T PRKAG1 Intron 0.23 TCGA-R5-A7ZE-01 12 57549993 57549993 C T LRP1 Silent p.T448T 0.19 TCGA-R5-A7ZE-01 12 9264984 9264984 G T A2M Missense_Mutation p.P140Q 0.11 deleterious(0) probably_damaging(0.998) TCGA-R5-A7ZE-01 12 94641749 94641749 C T PLXNC1 Missense_Mutation p.T820M 0.26 tolerated(0.09) benign(0.042) TCGA-R5-A7ZE-01 13 33701560 33701560 G A STARD13 Silent p.L624L 0.47 TCGA-R5-A7ZE-01 14 103372113 103372113 G A TRAF3 Missense_Mutation p.D567N 0.07 deleterious(0.03) benign(0.152) TCGA-R5-A7ZE-01 14 20586527 20586527 G T OR4K17 Missense_Mutation p.R321I 0.08 deleterious(0) possibly_damaging(0.675) TCGA-R5-A7ZE-01 14 65237841 65237841 G A SPTB Nonsense_Mutation p.Q1854* 0.21 TCGA-R5-A7ZE-01 14 73988986 73988986 C T HEATR4 Missense_Mutation p.V291I 0.07 tolerated(0.14) benign(0.185) TCGA-R5-A7ZE-01 14 93125543 93125543 G A RIN3 Silent p.L688L 0.08 TCGA-R5-A7ZE-01 15 20876589 20876589 T C NBEAP1 RNA 0.06 TCGA-R5-A7ZE-01 15 23931514 23931514 T C NDN Missense_Mutation p.K284R 0.15 tolerated(0.05) possibly_damaging(0.609) TCGA-R5-A7ZE-01 15 41165590 41165590 A C RHOV Missense_Mutation p.L126R 0.22 deleterious(0.02) possibly_damaging(0.767) TCGA-R5-A7ZE-01 15 48428925 48428925 G A SLC24A5 Silent p.L212L 0.19 TCGA-R5-A7ZE-01 15 64067372 64067372 G A HERC1 Missense_Mutation p.R151W 0.27 probably_damaging(0.957) TCGA-R5-A7ZE-01 15 85326090 85326090 G A ZNF592 Missense_Mutation p.D62N 0.24 deleterious(0) probably_damaging(0.999) TCGA-R5-A7ZE-01 15 86122174 86122174 A G AKAP13 Missense_Mutation p.K292R 0.10 tolerated(0.24) benign(0.013) TCGA-R5-A7ZE-01 16 14966138 14966138 T C NOMO1 Missense_Mutation p.L669P 0.37 tolerated(0.22) possibly_damaging(0.548) TCGA-R5-A7ZE-01 16 20487005 20487005 T C ACSM2A Silent p.T336T 0.12 TCGA-R5-A7ZE-01 16 23404565 23404565 G A COG7 Missense_Mutation p.P664L 0.07 deleterious(0.03) probably_damaging(0.991) TCGA-R5-A7ZE-01 16 65005898 65005898 T G CDH11 Missense_Mutation p.K487T 0.19 tolerated(0.08) benign(0.016) TCGA-R5-A7ZE-01 16 80654773 80654773 C A CDYL2 Silent p.L298L 0.21 TCGA-R5-A7ZE-01 17 11725297 11725297 A C DNAH9 Missense_Mutation p.N2923T 0.15 benign(0.314) TCGA-R5-A7ZE-01 17 28749859 28749859 C T CPD Missense_Mutation p.S492F 0.18 tolerated(0.09) benign(0.001) TCGA-R5-A7ZE-01 17 3301356 3301356 C T OR1E1 Missense_Mutation p.A117T 0.08 tolerated(0.21) benign(0.028) TCGA-R5-A7ZE-01 17 36991540 36991540 C T C17orf98 Missense_Mutation p.D123N 0.20 tolerated(0.5) benign(0) TCGA-R5-A7ZE-01 17 38645098 38645098 C G TNS4 Missense_Mutation p.R188T 0.04 deleterious(0.03) probably_damaging(0.997) TCGA-R5-A7ZE-01 17 38933271 38933271 C T KRT27 Missense_Mutation p.E454K 0.04 deleterious_low_confidence(0.02) benign(0.197) TCGA-R5-A7ZE-01 17 39197159 39197159 C A KRTAP1-1 Missense_Mutation p.C164F 0.88 deleterious(0) possibly_damaging(0.9) TCGA-R5-A7ZE-01 17 63526194 63526194 T C AXIN2 Missense_Mutation p.E811G 0.05 deleterious(0) probably_damaging(0.999) TCGA-R5-A7ZE-01 17 7578413 7578413 C A TP53 Missense_Mutation p.V173L 0.50 deleterious(0) probably_damaging(0.998) TCGA-R5-A7ZE-01 18 29693778 29693778 C T RNF138 Missense_Mutation p.S116F 0.11 deleterious(0.01) possibly_damaging(0.838) TCGA-R5-A7ZE-01 18 5394733 5394733 T G EPB41L3 Missense_Mutation p.K1071N 0.13 deleterious(0) probably_damaging(0.999) TCGA-R5-A7ZE-01 18 65178235 65178235 C A DSEL Missense_Mutation p.R1214L 0.28 tolerated(0.17) benign(0.007) TCGA-R5-A7ZE-01 18 7013975 7013975 T G LAMA1 Missense_Mutation p.K1068Q 0.18 tolerated(0.35) benign(0.014) TCGA-R5-A7ZE-01 19 1235842 1235842 C T C19orf26 Missense_Mutation p.V61M 0.06 deleterious(0) probably_damaging(0.955) TCGA-R5-A7ZE-01 19 1367199 1367199 A G MUM1 Missense_Mutation p.K469E 0.26 tolerated(0.14) possibly_damaging(0.522) TCGA-R5-A7ZE-01 19 16964958 16964958 G A SIN3B Missense_Mutation p.R315H 0.09 deleterious(0) probably_damaging(0.932) TCGA-R5-A7ZE-01 19 30936349 30936349 A C ZNF536 Missense_Mutation p.K627T 0.03 deleterious(0.02) possibly_damaging(0.464) TCGA-R5-A7ZE-01 19 35802885 35802885 G A MAG Missense_Mutation p.D561N 0.38 tolerated(0.19) benign(0.001) TCGA-R5-A7ZE-01 19 38190156 38190156 C G ZNF607 Missense_Mutation p.Q292H 0.28 tolerated(0.55) benign(0.044) TCGA-R5-A7ZE-01 19 42231183 42231183 G A CEACAM5 Missense_Mutation p.G686R 0.10 tolerated(0.34) possibly_damaging(0.694) TCGA-R5-A7ZE-01 19 45375197 45375197 G A PVRL2 Missense_Mutation p.R189H 0.23 tolerated(0.08) possibly_damaging(0.733) TCGA-R5-A7ZE-01 19 47423073 47423073 G T ARHGAP35 Missense_Mutation p.V381F 0.06 tolerated(0.07) possibly_damaging(0.621) TCGA-R5-A7ZE-01 19 48908239 48908239 T G GRIN2D Missense_Mutation p.S238R 0.21 tolerated(0.19) possibly_damaging(0.602) TCGA-R5-A7ZE-01 19 49132141 49132141 C T SPHK2 Missense_Mutation p.T359I 0.08 deleterious(0.02) probably_damaging(0.939) TCGA-R5-A7ZE-01 19 53014407 53014408 AA - ZNF578 Frame_Shift_Del p.Q258Lfs*2 0.15 TCGA-R5-A7ZE-01 19 54238188 54238188 C A MIR518D RNA 0.29 TCGA-R5-A7ZE-01 19 54238190 54238190 C G MIR518D RNA 0.30 TCGA-R5-A7ZE-01 19 54238212 54238212 T C MIR518D RNA 0.28 TCGA-R5-A7ZE-01 19 54254493 54254493 C T MIR522 RNA 0.22 TCGA-R5-A7ZE-01 19 8809062 8809062 C T ACTL9 5'UTR 0.22 TCGA-R5-A7ZE-01 19 9060550 9060550 T C MUC16 Missense_Mutation p.T8966A 0.29 unknown(0) TCGA-R5-A7ZE-01 19 9066415 9066415 T A MUC16 Nonsense_Mutation p.R7011* 0.31 TCGA-R5-A7ZE-01 1 1254783 1254783 G C CPSF3L Missense_Mutation p.R114G 0.06 deleterious(0) probably_damaging(0.999) TCGA-R5-A7ZE-01 1 151156851 151156851 G T VPS72 Silent p.T168T 0.19 TCGA-R5-A7ZE-01 1 154516466 154516466 G A TDRD10 Silent p.R177R 0.17 TCGA-R5-A7ZE-01 1 160105698 160105698 C T ATP1A2 Missense_Mutation p.T785I 0.15 tolerated(0.14) benign(0.055) TCGA-R5-A7ZE-01 1 16260226 16260226 G A SPEN Silent p.K2497K 0.25 TCGA-R5-A7ZE-01 1 167734976 167734976 C T MPZL1 Missense_Mutation p.T83I 0.19 tolerated(0.2) benign(0.175) TCGA-R5-A7ZE-01 1 190067167 190067167 G A BRINP3 Missense_Mutation p.T761M 0.05 tolerated(0.06) possibly_damaging(0.502) TCGA-R5-A7ZE-01 1 202407357 202407357 A G PPP1R12B Intron 0.17 TCGA-R5-A7ZE-01 1 204948672 204948672 C T NFASC Nonsense_Mutation p.R721* 0.18 TCGA-R5-A7ZE-01 1 212619246 212619246 C T NENF Silent p.I139I 0.05 TCGA-R5-A7ZE-01 1 236908017 236908017 C T ACTN2 Silent p.S449S 0.35 TCGA-R5-A7ZE-01 1 247902091 247902091 T G OR14K1 Missense_Mutation p.F59V 0.35 deleterious(0) probably_damaging(0.952) TCGA-R5-A7ZE-01 1 35913826 35913826 C T KIAA0319L Missense_Mutation p.V821M 0.12 deleterious(0) probably_damaging(0.979) TCGA-R5-A7ZE-01 1 43905665 43905666 AT - SZT2 Frame_Shift_Del p.I2329Hfs*28 0.11 TCGA-R5-A7ZE-01 1 86591467 86591467 T C COL24A1 Silent p.K184K 0.13 TCGA-R5-A7ZE-01 20 31023116 31023116 G A ASXL1 Silent p.G867G 0.19 TCGA-R5-A7ZE-01 20 43610574 43610574 G A STK4 Missense_Mutation p.R117Q 0.09 tolerated(0.06) benign(0.201) TCGA-R5-A7ZE-01 20 61950450 61950450 G A COL20A1 Missense_Mutation p.V902I 0.32 tolerated(0.34) benign(0.115) TCGA-R5-A7ZE-01 21 19775963 19775963 T G TMPRSS15 5'UTR 0.26 TCGA-R5-A7ZE-01 22 18300640 18300640 C T MICAL3 Missense_Mutation p.R1596H 0.15 probably_damaging(0.997) TCGA-R5-A7ZE-01 22 24300607 24300607 C T GSTT2B Silent p.E130E 0.35 TCGA-R5-A7ZE-01 22 49103568 49103568 C T FAM19A5 Missense_Mutation p.P101L 0.07 deleterious(0) probably_damaging(0.998) TCGA-R5-A7ZE-01 2 100628025 100628025 T C AFF3 Missense_Mutation p.D21G 0.04 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-R5-A7ZE-01 2 105472921 105472921 C T POU3F3 Missense_Mutation p.T318M 0.58 deleterious(0) probably_damaging(0.998) TCGA-R5-A7ZE-01 2 107423141 107423141 T C ST6GAL2 Missense_Mutation p.H528R 0.41 benign(0.034) TCGA-R5-A7ZE-01 2 120005308 120005308 G A STEAP3 Silent p.A192A 0.62 TCGA-R5-A7ZE-01 2 152512874 152512874 C T NEB Missense_Mutation p.M2096I 0.05 benign(0.101) TCGA-R5-A7ZE-01 2 167089962 167089962 A G SCN9A Missense_Mutation p.V1260A 0.20 tolerated(0.06) possibly_damaging(0.651) TCGA-R5-A7ZE-01 2 179412719 179412719 C T TTN Missense_Mutation p.E31212K 0.32 TCGA-R5-A7ZE-01 2 179579963 179579963 A T TTN Missense_Mutation p.H8650Q 0.44 TCGA-R5-A7ZE-01 2 209110090 209110090 G A IDH1 Missense_Mutation p.P158L 0.07 deleterious_low_confidence(0) probably_damaging(0.97) TCGA-R5-A7ZE-01 2 210558039 210558039 C G MAP2 Missense_Mutation p.A382G 0.11 tolerated_low_confidence(0.07) benign(0.012) TCGA-R5-A7ZE-01 2 215831608 215831608 G A ABCA12 Nonsense_Mutation p.R1950* 0.41 TCGA-R5-A7ZE-01 2 225630444 225630444 T G DOCK10 Missense_Mutation p.E2185D 0.40 tolerated_low_confidence(0.51) benign(0.001) TCGA-R5-A7ZE-01 2 74649360 74649360 C T WDR54 Missense_Mutation p.P27L 0.06 tolerated(0.12) benign(0.04) TCGA-R5-A7ZE-01 2 74649365 74649365 C G WDR54 Missense_Mutation p.R29G 0.06 tolerated(0.15) benign(0.006) TCGA-R5-A7ZE-01 2 80773050 80773050 A C CTNNA2 Missense_Mutation p.T468P 0.22 tolerated(0.1) possibly_damaging(0.805) TCGA-R5-A7ZE-01 2 85570430 85570430 G A RETSAT Missense_Mutation p.R590W 0.20 deleterious(0.01) benign(0.337) TCGA-R5-A7ZE-01 2 89513368 89513368 G A IGKV1-27 Silent p.V5V 0.06 TCGA-R5-A7ZE-01 2 90248969 90248969 T A IGKV1D-43 Missense_Mutation p.F17Y 0.16 deleterious(0.03) benign(0.009) TCGA-R5-A7ZE-01 2 98263891 98263892 - TAG COX5B In_Frame_Ins p.V89dup 0.10 TCGA-R5-A7ZE-01 3 108677899 108677899 A G MORC1 Silent p.L956L 0.46 TCGA-R5-A7ZE-01 3 113118804 113118804 G A WDR52 Silent p.A506A 0.11 TCGA-R5-A7ZE-01 3 126708322 126708322 G A PLXNA1 Missense_Mutation p.V296I 0.06 deleterious(0) probably_damaging(0.996) TCGA-R5-A7ZE-01 3 142274959 142274959 C T ATR Missense_Mutation p.D701N 0.14 tolerated(0.22) benign(0.002) TCGA-R5-A7ZE-01 3 1424637 1424637 A G CNTN6 Silent p.E726E 0.20 TCGA-R5-A7ZE-01 3 164735642 164735642 A C SI Silent p.T1180T 0.11 TCGA-R5-A7ZE-01 3 185655748 185655748 C G TRA2B 5'UTR 0.58 TCGA-R5-A7ZE-01 3 189582080 189582080 C G TP63 Missense_Mutation p.I213M 0.03 tolerated(0.12) possibly_damaging(0.907) TCGA-R5-A7ZE-01 3 191888356 191888356 T A FGF12 Missense_Mutation p.E168D 0.06 tolerated(0.47) benign(0.12) TCGA-R5-A7ZE-01 3 42230516 42230516 G A TRAK1 Missense_Mutation p.R197K 0.38 tolerated(0.87) probably_damaging(0.996) TCGA-R5-A7ZE-01 3 4354862 4354862 C T SETMAR Missense_Mutation p.T146M 0.17 deleterious_low_confidence(0) probably_damaging(1) TCGA-R5-A7ZE-01 3 47127693 47127693 G A SETD2 Nonsense_Mutation p.Q1797* 0.27 TCGA-R5-A7ZE-01 3 73433427 73433427 A C PDZRN3 Missense_Mutation p.C764G 0.28 deleterious(0) probably_damaging(0.946) TCGA-R5-A7ZE-01 3 77666743 77666743 G T ROBO2 Missense_Mutation p.D1141Y 0.15 deleterious(0) possibly_damaging(0.861) TCGA-R5-A7ZE-01 4 138451605 138451605 T G PCDH18 Missense_Mutation p.E546D 0.33 deleterious(0.05) benign(0.217) TCGA-R5-A7ZE-01 4 144387374 144387374 G A GAB1 Missense_Mutation p.R671H 0.20 deleterious(0.03) probably_damaging(0.987) TCGA-R5-A7ZE-01 4 155507126 155507126 G A FGA Silent p.S485S 0.28 TCGA-R5-A7ZE-01 4 167921514 167921514 C T SPOCK3 Silent p.R115R 0.11 TCGA-R5-A7ZE-01 4 177142395 177142395 A C ASB5 Missense_Mutation p.V194G 0.09 deleterious(0) possibly_damaging(0.697) TCGA-R5-A7ZE-01 4 177241264 177241264 G T SPCS3 Missense_Mutation p.A13S 0.08 deleterious(0.01) probably_damaging(0.963) TCGA-R5-A7ZE-01 4 46067470 46067470 T C GABRG1 Silent p.R151R 0.14 TCGA-R5-A7ZE-01 4 55129926 55129926 G T PDGFRA Missense_Mutation p.D154Y 0.15 deleterious(0) possibly_damaging(0.568) TCGA-R5-A7ZE-01 4 84502766 84502766 G T AGPAT9 Missense_Mutation p.R87L 0.09 tolerated(0.16) probably_damaging(0.998) TCGA-R5-A7ZE-01 5 110439921 110439921 G A WDR36 Missense_Mutation p.G315E 0.21 deleterious(0.01) possibly_damaging(0.477) TCGA-R5-A7ZE-01 5 13864659 13864659 C T DNAH5 Silent p.P1481P 0.06 TCGA-R5-A7ZE-01 5 140182226 140182226 G A PCDHA3 Missense_Mutation p.A482T 0.16 deleterious_low_confidence(0.02) benign(0.396) TCGA-R5-A7ZE-01 5 140605366 140605366 G A PCDHB14 Silent p.E763E 0.07 TCGA-R5-A7ZE-01 5 149500553 149500553 C T PDGFRB Silent p.A828A 0.24 TCGA-R5-A7ZE-01 5 149582170 149582170 G A SLC6A7 Missense_Mutation p.A331T 0.14 deleterious(0.01) probably_damaging(0.993) TCGA-R5-A7ZE-01 5 167957463 167957463 C T FBLL1 Silent p.H318H 0.19 TCGA-R5-A7ZE-01 5 230998 230998 G A SDHA Missense_Mutation p.G260R 0.13 deleterious_low_confidence(0) probably_damaging(1) TCGA-R5-A7ZE-01 5 41805696 41805696 C T OXCT1 Missense_Mutation p.A310T 0.06 deleterious(0.01) possibly_damaging(0.653) TCGA-R5-A7ZE-01 5 72798943 72798943 G C BTF3 Splice_Site p.X173_splice 0.24 TCGA-R5-A7ZE-01 6 107019842 107019842 C T RTN4IP1 3'Flank 0.12 TCGA-R5-A7ZE-01 6 143093607 143093607 G A HIVEP2 Missense_Mutation p.R757C 0.17 deleterious(0.02) possibly_damaging(0.855) TCGA-R5-A7ZE-01 6 146480528 146480528 G T GRM1 Missense_Mutation p.A249S 0.22 tolerated(0.37) benign(0.014) TCGA-R5-A7ZE-01 6 147648398 147648398 G A STXBP5 Missense_Mutation p.R689Q 0.07 tolerated(0.12) benign(0.028) TCGA-R5-A7ZE-01 6 154520839 154520839 G T IPCEF1 Silent p.V291V 0.24 TCGA-R5-A7ZE-01 6 155451444 155451444 C T TIAM2 Missense_Mutation p.P363S 0.08 tolerated(1) benign(0.001) TCGA-R5-A7ZE-01 6 170156448 170156448 A G ERMARD Missense_Mutation p.I110M 0.33 tolerated(0.12) benign(0.098) TCGA-R5-A7ZE-01 6 29455077 29455077 A C MAS1L Silent p.P201P 0.16 TCGA-R5-A7ZE-01 6 31753100 31753100 C T VARS Missense_Mutation p.G424S 0.33 tolerated(0.06) probably_damaging(0.999) TCGA-R5-A7ZE-01 6 34507121 34507121 G A SPDEF Silent p.S245S 0.48 TCGA-R5-A7ZE-01 6 36929709 36929709 C G PI16 Missense_Mutation p.S184C 0.07 deleterious(0) probably_damaging(0.996) TCGA-R5-A7ZE-01 6 57467094 57467094 C T PRIM2 Silent p.Y345Y 0.06 TCGA-R5-A7ZE-01 6 62995790 62995790 C A KHDRBS2 Missense_Mutation p.V22L 0.13 tolerated(0.25) probably_damaging(0.956) TCGA-R5-A7ZE-01 6 69949117 69949117 A C BAI3 Missense_Mutation p.K938T 0.14 deleterious(0) benign(0.138) TCGA-R5-A7ZE-01 7 100552578 100552578 G A MUC3A Silent p.P443P 0.12 TCGA-R5-A7ZE-01 7 11091335 11091335 G C PHF14 Missense_Mutation p.Q803H 0.14 tolerated(0.07) probably_damaging(0.93) TCGA-R5-A7ZE-01 7 129410294 129410294 G A MIR182 RNA 0.56 TCGA-R5-A7ZE-01 7 16901054 16901054 C A AGR3 Missense_Mutation p.K107N 0.08 deleterious(0.02) probably_damaging(0.995) TCGA-R5-A7ZE-01 7 28610048 28610048 C T CREB5 Silent p.S119S 0.06 TCGA-R5-A7ZE-01 7 38313230 38313230 T G TRGJP Missense_Mutation p.K7Q 0.30 unknown(0) TCGA-R5-A7ZE-01 7 82538193 82538193 T G PCLO Missense_Mutation p.Q4479H 0.21 unknown(0) TCGA-R5-A7ZE-01 8 113318395 113318395 G A CSMD3 Missense_Mutation p.P2638S 0.10 tolerated(0.07) probably_damaging(0.992) TCGA-R5-A7ZE-01 8 136619239 136619239 T G KHDRBS3 Missense_Mutation p.S283R 0.05 deleterious(0.01) benign(0.079) TCGA-R5-A7ZE-01 8 140630697 140630697 C T KCNK9 Missense_Mutation p.R310H 0.12 tolerated(0.08) benign(0.35) TCGA-R5-A7ZE-01 8 144620374 144620374 G A ZC3H3 Missense_Mutation p.S388F 0.39 deleterious(0) probably_damaging(0.982) TCGA-R5-A7ZE-01 8 144941694 144941694 C G EPPK1 Missense_Mutation p.V1910L 0.33 benign(0.334) TCGA-R5-A7ZE-01 8 144941697 144941697 C - EPPK1 Frame_Shift_Del p.E1909Rfs*3 0.34 TCGA-R5-A7ZE-01 8 144945500 144945500 A G EPPK1 Missense_Mutation p.L641P 0.16 probably_damaging(0.997) TCGA-R5-A7ZE-01 8 144945514 144945514 C A EPPK1 Silent p.R636R 0.14 TCGA-R5-A7ZE-01 8 144992082 144992082 C T PLEC Silent p.A4106A 0.12 TCGA-R5-A7ZE-01 8 1513979 1513979 C T DLGAP2 Missense_Mutation p.P374L 0.10 deleterious(0.01) possibly_damaging(0.755) TCGA-R5-A7ZE-01 8 26627784 26627784 C A ADRA1A Intron 0.06 TCGA-R5-A7ZE-01 8 48776134 48776134 T C PRKDC Missense_Mutation p.N1858S 0.05 benign(0.03) TCGA-R5-A7ZE-01 8 55540232 55540232 G A RP1 Missense_Mutation p.V1264I 0.09 tolerated(0.1) benign(0.421) TCGA-R5-A7ZE-01 8 80954892 80954892 G C TPD52 Missense_Mutation p.T173S 0.04 tolerated(0.11) possibly_damaging(0.702) TCGA-R5-A7ZE-01 9 100410455 100410455 C T NCBP1 Missense_Mutation p.P283S 0.08 deleterious(0.03) possibly_damaging(0.671) TCGA-R5-A7ZE-01 9 124528939 124528939 C T DAB2IP Missense_Mutation p.P515S 0.07 deleterious(0) probably_damaging(0.999) TCGA-R5-A7ZE-01 9 131481964 131481964 G A PKN3 Splice_Site p.X709_splice 0.06 TCGA-R5-A7ZE-01 9 131678487 131678487 C T LRRC8A Missense_Mutation p.T757M 0.07 tolerated(0.06) benign(0.324) TCGA-R5-A7ZE-01 9 139412233 139412233 A G NOTCH1 Missense_Mutation p.I471T 0.05 deleterious(0.03) probably_damaging(0.999) TCGA-R5-A7ZE-01 X 106358656 106358656 C T RBM41 Missense_Mutation p.R150Q 0.07 deleterious(0.01) probably_damaging(0.997) TCGA-R5-A7ZE-01 X 132887801 132887801 T G GPC3 Missense_Mutation p.K247T 0.09 tolerated(0.15) benign(0.342) TCGA-R5-A7ZE-01 X 137717719 137717719 C T FGF13 Missense_Mutation p.R177Q 0.22 deleterious(0.01) possibly_damaging(0.79) TCGA-R5-A7ZE-01 X 140996082 140996082 C T MAGEC1 Silent p.S964S 0.09 TCGA-R5-A7ZE-01 X 142967629 142967629 G T UBE2NL Missense_Mutation p.A143S 0.06 tolerated(0.16) benign(0.1) TCGA-R5-A7ZE-01 X 154133116 154133116 T G F8 Missense_Mutation p.K1852N 0.09 deleterious(0) probably_damaging(0.998) TCGA-R5-A7ZE-01 X 22132627 22132627 T C PHEX Missense_Mutation p.F409L 0.31 deleterious(0.03) benign(0.01) TCGA-R5-A7ZE-01 X 49851324 49851324 A C CLCN5 Missense_Mutation p.S452R 0.17 deleterious(0) possibly_damaging(0.809) TCGA-R5-A7ZE-01 X 63445346 63445346 C T ASB12 Missense_Mutation p.R62H 0.11 deleterious(0.02) probably_damaging(0.981) TCGA-R5-A7ZE-01 X 75004670 75004670 C T MAGEE2 Missense_Mutation p.D73N 0.05 tolerated(0.32) benign(0.002) TCGA-R5-A7ZE-01 X 99924253 99924253 C G SRPX2 Silent p.T368T 0.05 TCGA-R5-A7ZF-01 10 104415028 104415028 G A TRIM8 Silent p.L286L 0.17 TCGA-R5-A7ZF-01 10 18816589 18816589 C T CACNB2 Silent p.H339H 0.16 TCGA-R5-A7ZF-01 11 78372618 78372618 A G TENM4 Missense_Mutation p.L2476P 0.14 tolerated(0.23) benign(0.007) TCGA-R5-A7ZF-01 12 106460792 106460792 G A NUAK1 Missense_Mutation p.R592C 0.10 tolerated(0.08) benign(0.008) TCGA-R5-A7ZF-01 12 108686191 108686191 C T CMKLR1 Silent p.L183L 0.15 TCGA-R5-A7ZF-01 12 124817778 124817778 C T NCOR2 Missense_Mutation p.G2218D 0.17 probably_damaging(0.962) TCGA-R5-A7ZF-01 12 56578895 56578895 C T SMARCC2 Nonsense_Mutation p.W106* 0.08 TCGA-R5-A7ZF-01 12 6636067 6636067 C T NCAPD2 Silent p.P915P 0.30 TCGA-R5-A7ZF-01 12 6707121 6707121 G A CHD4 Missense_Mutation p.R611C 0.07 deleterious(0) possibly_damaging(0.876) TCGA-R5-A7ZF-01 12 72289743 72289743 G A TBC1D15 Missense_Mutation p.R308H 0.15 deleterious(0) possibly_damaging(0.87) TCGA-R5-A7ZF-01 13 111134925 111134925 G A COL4A2 Missense_Mutation p.G941R 0.21 possibly_damaging(0.732) TCGA-R5-A7ZF-01 13 24895943 24895943 A C C1QTNF9 3'UTR 0.14 TCGA-R5-A7ZF-01 14 23847912 23847912 C T CMTM5 Intron 0.15 TCGA-R5-A7ZF-01 14 58036697 58036697 A G SLC35F4 Missense_Mutation p.V348A 0.17 deleterious(0) possibly_damaging(0.709) TCGA-R5-A7ZF-01 14 69558495 69558495 G C DCAF5 Missense_Mutation p.L259V 0.30 deleterious(0.03) benign(0.299) TCGA-R5-A7ZF-01 14 75570548 75570556 ATGGTTGAT - NEK9 In_Frame_Del p.I574_H576del 0.29 TCGA-R5-A7ZF-01 15 59373214 59373219 GCCTCC - RNF111 In_Frame_Del p.P678_P679del 0.19 TCGA-R5-A7ZF-01 16 51171070 51171070 G A SALL1 Missense_Mutation p.R1310C 0.22 deleterious(0.01) possibly_damaging(0.893) TCGA-R5-A7ZF-01 16 67042915 67042917 ACA - CES4A In_Frame_Del p.T453del 0.09 TCGA-R5-A7ZF-01 16 81134670 81134670 C T GCSH 5'Flank 0.13 TCGA-R5-A7ZF-01 17 16691413 16691413 T C CCDC144A 3'UTR 0.05 TCGA-R5-A7ZF-01 17 43320615 43320615 G A FMNL1 Missense_Mutation p.R714Q 0.05 deleterious(0) probably_damaging(0.997) TCGA-R5-A7ZF-01 17 61958835 61958835 A G GH2 Missense_Mutation p.S19P 0.11 tolerated(1) benign(0) TCGA-R5-A7ZF-01 17 72588699 72588699 G A C17orf77 Missense_Mutation p.E172K 0.15 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-R5-A7ZF-01 17 75478323 75478323 G A SEPT9 Silent p.P273P 0.15 TCGA-R5-A7ZF-01 17 7578257 7578257 C A TP53 Nonsense_Mutation p.E198* 0.30 TCGA-R5-A7ZF-01 18 48575202 48575202 C A SMAD4 Missense_Mutation p.H132Q 0.10 deleterious(0) probably_damaging(1) TCGA-R5-A7ZF-01 18 6948410 6948410 G A LAMA1 Missense_Mutation p.A2901V 0.09 deleterious(0.02) benign(0.021) TCGA-R5-A7ZF-01 18 6986280 6986280 T C LAMA1 Silent p.V1745V 0.17 TCGA-R5-A7ZF-01 19 57176297 57176297 C A ZNF835 Silent p.P90P 0.15 TCGA-R5-A7ZF-01 19 58213199 58213199 C T ZNF154 Missense_Mutation p.R373Q 0.13 tolerated(0.3) benign(0.003) TCGA-R5-A7ZF-01 19 9075142 9075142 C T MUC16 Missense_Mutation p.A4102T 0.21 unknown(0) TCGA-R5-A7ZF-01 1 101185349 101185349 G A VCAM1 5'UTR 0.21 TCGA-R5-A7ZF-01 1 12520327 12520327 G A VPS13D Missense_Mutation p.G4180S 0.16 probably_damaging(0.946) TCGA-R5-A7ZF-01 1 152284617 152284617 T C FLG Silent p.E915E 0.06 TCGA-R5-A7ZF-01 1 157514151 157514151 C A FCRL5 Missense_Mutation p.A249S 0.20 tolerated(0.48) benign(0.122) TCGA-R5-A7ZF-01 1 160466140 160466140 G A SLAMF6 Silent p.N31N 0.15 TCGA-R5-A7ZF-01 1 193045046 193045046 T G TROVE2 Nonsense_Mutation p.L226* 0.06 TCGA-R5-A7ZF-01 1 208266215 208266215 G T PLXNA2 Silent p.R671R 0.10 TCGA-R5-A7ZF-01 1 21031011 21031011 C T KIF17 Missense_Mutation p.R351H 0.14 deleterious(0) probably_damaging(0.981) TCGA-R5-A7ZF-01 1 236399100 236399100 G A ERO1LB Missense_Mutation p.A221V 0.13 tolerated(0.06) benign(0.142) TCGA-R5-A7ZF-01 1 26131721 26131721 T C SEPN1 Silent p.P164P 0.13 TCGA-R5-A7ZF-01 1 29642649 29642649 C T PTPRU Missense_Mutation p.R1177W 0.16 deleterious(0) probably_damaging(0.978) TCGA-R5-A7ZF-01 1 63299737 63299737 G A ATG4C Missense_Mutation p.G321D 0.08 deleterious(0) probably_damaging(0.985) TCGA-R5-A7ZF-01 20 35060206 35060206 G A DLGAP4 Missense_Mutation p.R29H 0.10 tolerated(0.32) benign(0.007) TCGA-R5-A7ZF-01 20 40126804 40126804 G A CHD6 Intron 0.10 TCGA-R5-A7ZF-01 20 60503418 60503418 G A CDH4 Missense_Mutation p.V648I 0.41 tolerated(0.12) benign(0.006) TCGA-R5-A7ZF-01 21 10906911 10906911 G A TPTE Silent p.S550S 0.08 TCGA-R5-A7ZF-01 22 50319112 50319112 G A CRELD2 Missense_Mutation p.E355K 0.09 deleterious(0.02) probably_damaging(0.932) TCGA-R5-A7ZF-01 2 109384039 109384039 A G RANBP2 Silent p.Q2348Q 0.12 TCGA-R5-A7ZF-01 2 113820271 113820271 G A IL36RN 3'UTR 0.15 TCGA-R5-A7ZF-01 2 121747795 121747795 C T GLI2 Silent p.D1435D 0.11 TCGA-R5-A7ZF-01 2 160585644 160585644 T C MARCH7 Silent p.Y37Y 0.11 TCGA-R5-A7ZF-01 2 172935731 172935731 T C METAP1D Missense_Mutation p.C213R 0.22 deleterious(0) probably_damaging(1) TCGA-R5-A7ZF-01 2 189859787 189859787 C T COL3A1 Nonsense_Mutation p.R491* 0.12 TCGA-R5-A7ZF-01 2 189929285 189929285 G A COL5A2 Missense_Mutation p.R572W 0.11 probably_damaging(0.999) TCGA-R5-A7ZF-01 2 215917263 215917263 G A ABCA12 Missense_Mutation p.T152I 0.10 tolerated(0.22) benign(0.001) TCGA-R5-A7ZF-01 2 234775853 234775853 T C MSL3P1 RNA 0.29 TCGA-R5-A7ZF-01 3 125266373 125266373 C T OSBPL11 Missense_Mutation p.R573Q 0.16 deleterious(0) probably_damaging(0.99) TCGA-R5-A7ZF-01 3 24009511 24009511 G A NR1D2 Missense_Mutation p.A514T 0.07 deleterious(0) possibly_damaging(0.753) TCGA-R5-A7ZF-01 3 24009512 24009512 C G NR1D2 Missense_Mutation p.A514G 0.07 deleterious(0) possibly_damaging(0.686) TCGA-R5-A7ZF-01 3 27161337 27161337 G T NEK10 Missense_Mutation p.P1092Q 0.38 tolerated(0.14) benign(0.01) TCGA-R5-A7ZF-01 3 39543582 39543582 G A MOBP Missense_Mutation p.E8K 0.06 deleterious_low_confidence(0) benign(0.204) TCGA-R5-A7ZF-01 3 50418494 50418494 C T CACNA2D2 Missense_Mutation p.R239H 0.06 tolerated(0.1) probably_damaging(0.939) TCGA-R5-A7ZF-01 4 74310820 74310820 T C AFP Missense_Mutation p.L275P 0.32 deleterious(0.03) benign(0.035) TCGA-R5-A7ZF-01 5 112174494 112174494 C A APC Nonsense_Mutation p.S1068* 0.19 TCGA-R5-A7ZF-01 5 132425373 132425373 C T HSPA4 Missense_Mutation p.P455L 0.10 deleterious(0) possibly_damaging(0.656) TCGA-R5-A7ZF-01 5 140554382 140554382 G A PCDHB7 Missense_Mutation p.A656T 0.31 deleterious_low_confidence(0.01) benign(0.15) TCGA-R5-A7ZF-01 5 151047130 151047130 G A SPARC Silent p.T161T 0.34 TCGA-R5-A7ZF-01 5 36066824 36066824 G A UGT3A2 Missense_Mutation p.A23V 0.04 deleterious(0.01) probably_damaging(0.938) TCGA-R5-A7ZF-01 5 9238004 9238004 T C SEMA5A Splice_Site p.X91_splice 0.07 TCGA-R5-A7ZF-01 6 26216847 26216847 G A HIST1H2BG Missense_Mutation p.P9S 0.13 deleterious_low_confidence(0.04) unknown(0) TCGA-R5-A7ZF-01 6 30892235 30892235 G A VARS2 Missense_Mutation p.M887I 0.20 deleterious(0) possibly_damaging(0.856) TCGA-R5-A7ZF-01 6 31855598 31855598 C T EHMT2 Missense_Mutation p.R629Q 0.24 tolerated(0.07) probably_damaging(0.929) TCGA-R5-A7ZF-01 6 33653466 33653466 G A ITPR3 Silent p.S1843S 0.29 TCGA-R5-A7ZF-01 6 80752007 80752007 G C TTK 3'UTR 0.15 TCGA-R5-A7ZF-01 7 106508793 106508793 G A PIK3CG Missense_Mutation p.E263K 0.23 tolerated(0.06) possibly_damaging(0.523) TCGA-R5-A7ZF-01 7 1131669 1131669 C T GPER1 Missense_Mutation p.A102V 0.05 deleterious(0) probably_damaging(1) TCGA-R5-A7ZF-01 7 34979831 34979831 C T DPY19L1 Missense_Mutation p.V527I 0.14 tolerated(1) benign(0.004) TCGA-R5-A7ZF-01 7 55466207 55466207 G A LANCL2 Silent p.R138R 0.05 TCGA-R5-A7ZF-01 8 35425694 35425694 G A UNC5D Missense_Mutation p.C134Y 0.06 deleterious(0) probably_damaging(0.999) TCGA-R5-A7ZF-01 8 89053958 89053958 G T MMP16 Missense_Mutation p.P519T 0.07 deleterious(0.02) probably_damaging(0.921) TCGA-R5-A7ZF-01 9 79324247 79324247 G A PRUNE2 Silent p.D981D 0.23 TCGA-R5-A7ZF-01 X 130412569 130412569 G T IGSF1 Missense_Mutation p.P641Q 0.05 tolerated(0.06) probably_damaging(0.943) TCGA-R5-A7ZF-01 X 144905139 144905139 G C SLITRK2 Missense_Mutation p.S399T 0.14 tolerated(0.84) benign(0.012) TCGA-R5-A7ZF-01 X 153135928 153135928 G A L1CAM Missense_Mutation p.R241C 0.18 deleterious(0.01) possibly_damaging(0.816) TCGA-R5-A7ZF-01 X 82763692 82763692 G A POU3F4 Silent p.P120P 0.19 TCGA-R5-A7ZF-01 X 8502398 8502398 G A KAL1 Missense_Mutation p.T649M 0.08 tolerated(0.07) benign(0.175) TCGA-R5-A7ZI-01 10 101668716 101668716 C A DNMBP Missense_Mutation p.Q816H 0.23 deleterious(0.01) probably_damaging(0.928) TCGA-R5-A7ZI-01 10 101824992 101824992 G A CPN1 Missense_Mutation p.R238C 0.19 deleterious(0.02) probably_damaging(0.932) TCGA-R5-A7ZI-01 10 101914623 101914623 T C ERLIN1 Silent p.S273S 0.12 TCGA-R5-A7ZI-01 10 102789857 102789857 C T PDZD7 Silent p.T40T 0.10 TCGA-R5-A7ZI-01 10 103871260 103871260 G A LDB1 Missense_Mutation p.P20L 0.18 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-R5-A7ZI-01 10 103901662 103901663 - CTG PPRC1 In_Frame_Ins p.A1134dup 0.17 TCGA-R5-A7ZI-01 10 105883548 105883548 G A SFR1 Missense_Mutation p.R71H 0.16 tolerated(0.05) benign(0.141) TCGA-R5-A7ZI-01 10 105924014 105924014 G A WDR96 Silent p.D1028D 0.11 TCGA-R5-A7ZI-01 10 105974107 105974107 A G WDR96 Missense_Mutation p.M165T 0.18 deleterious(0) possibly_damaging(0.503) TCGA-R5-A7ZI-01 10 106152126 106152126 T C CCDC147 Missense_Mutation p.Y501H 0.15 deleterious(0.01) possibly_damaging(0.894) TCGA-R5-A7ZI-01 10 108447993 108447993 G A SORCS1 Missense_Mutation p.A506V 0.17 deleterious(0.03) probably_damaging(0.929) TCGA-R5-A7ZI-01 10 108923913 108923913 C T SORCS1 Silent p.A124A 0.17 TCGA-R5-A7ZI-01 10 116608431 116608431 G A FAM160B1 Missense_Mutation p.A580T 0.14 deleterious(0.02) possibly_damaging(0.887) TCGA-R5-A7ZI-01 10 118215240 118215240 T A PNLIPRP3 Missense_Mutation p.F155I 0.20 tolerated(0.1) possibly_damaging(0.515) TCGA-R5-A7ZI-01 10 118434574 118434574 C T HSPA12A Silent p.E582E 0.11 TCGA-R5-A7ZI-01 10 118897537 118897537 G A VAX1 Nonsense_Mutation p.R11* 0.14 TCGA-R5-A7ZI-01 10 120801843 120801843 A G EIF3A Silent p.A1063A 0.16 TCGA-R5-A7ZI-01 10 12191899 12191899 C T SEC61A2 Missense_Mutation p.T134M 0.17 deleterious(0.02) possibly_damaging(0.806) TCGA-R5-A7ZI-01 10 123276958 123276958 G A FGFR2 Intron 0.13 TCGA-R5-A7ZI-01 10 127530280 127530280 A - BCCIP Intron 0.10 TCGA-R5-A7ZI-01 10 12811708 12811708 T A CAMK1D Missense_Mutation p.S159T 0.13 deleterious(0) possibly_damaging(0.531) TCGA-R5-A7ZI-01 10 23250943 23250943 A T ARMC3 Missense_Mutation p.E223V 0.18 deleterious(0) benign(0.25) TCGA-R5-A7ZI-01 10 24809079 24809081 GAA - KIAA1217 In_Frame_Del p.K737del 0.25 TCGA-R5-A7ZI-01 10 27458958 27458958 C T MASTL Missense_Mutation p.T357M 0.20 tolerated(0.19) possibly_damaging(0.781) TCGA-R5-A7ZI-01 10 323320 323320 C T DIP2C Missense_Mutation p.R1539Q 0.17 deleterious(0) probably_damaging(0.968) TCGA-R5-A7ZI-01 10 48416412 48416413 - T GDF2 Frame_Shift_Ins p.N94Kfs*7 0.20 TCGA-R5-A7ZI-01 10 49658383 49658383 C T ARHGAP22 Missense_Mutation p.E613K 0.25 tolerated(0.52) benign(0.01) TCGA-R5-A7ZI-01 10 50944167 50944167 C T OGDHL Silent p.A937A 0.15 TCGA-R5-A7ZI-01 10 51754188 51754188 A G AGAP6 Missense_Mutation p.H132R 0.06 deleterious_low_confidence(0.03) benign(0.012) TCGA-R5-A7ZI-01 10 52389386 52389386 C G RP11-50E11.3 RNA 0.12 TCGA-R5-A7ZI-01 10 55700673 55700673 G A PCDH15 Missense_Mutation p.A1062V 0.12 deleterious(0.02) probably_damaging(0.995) TCGA-R5-A7ZI-01 10 5791421 5791421 A T FAM208B Missense_Mutation p.I2013F 0.20 tolerated(0.06) benign(0.01) TCGA-R5-A7ZI-01 10 61012624 61012625 - A FAM13C Frame_Shift_Ins p.L489Ffs*4 0.10 TCGA-R5-A7ZI-01 10 61829730 61829730 G A ANK3 Missense_Mutation p.H3637Y 0.17 probably_damaging(0.932) TCGA-R5-A7ZI-01 10 64968499 64968499 T - JMJD1C Frame_Shift_Del p.N977Mfs*5 0.15 TCGA-R5-A7ZI-01 10 70176506 70176506 G T DNA2 Missense_Mutation p.P1111H 0.13 deleterious(0.02) probably_damaging(0.987) TCGA-R5-A7ZI-01 10 72358774 72358774 C T PRF1 Missense_Mutation p.A235T 0.19 tolerated(0.44) benign(0.055) TCGA-R5-A7ZI-01 10 72645625 72645625 G T PCBD1 Missense_Mutation p.A22D 0.14 tolerated(0.3) benign(0.007) TCGA-R5-A7ZI-01 10 73545397 73545397 G A CDH23 Missense_Mutation p.V1913I 0.30 tolerated(0.67) benign(0.009) TCGA-R5-A7ZI-01 10 74714407 74714407 T C PLA2G12B Missense_Mutation p.S13G 0.10 tolerated(0.4) benign(0.001) TCGA-R5-A7ZI-01 10 79163692 79163692 G A KCNMA1 Silent p.V156V 0.18 TCGA-R5-A7ZI-01 10 85981873 85981873 C T LRIT2 Missense_Mutation p.A486T 0.11 tolerated(1) benign(0.009) TCGA-R5-A7ZI-01 10 88259565 88259565 T - WAPAL Frame_Shift_Del p.R479Efs*46 0.19 TCGA-R5-A7ZI-01 10 890939 890939 T - LARP4B Frame_Shift_Del p.T163Hfs*47 0.14 TCGA-R5-A7ZI-01 10 91192815 91192815 C A SLC16A12 3'UTR 0.17 TCGA-R5-A7ZI-01 10 93699781 93699781 A - BTAF1 Frame_Shift_Del p.N72Mfs*30 0.22 TCGA-R5-A7ZI-01 10 96117098 96117098 A - NOC3L Intron 0.21 TCGA-R5-A7ZI-01 10 96827425 96827425 C T CYP2C8 Silent p.V64V 0.19 TCGA-R5-A7ZI-01 10 96997738 96997738 G A PDLIM1 Missense_Mutation p.R312W 0.13 tolerated(0.12) benign(0.179) TCGA-R5-A7ZI-01 10 97031534 97031534 G T PDLIM1 Missense_Mutation p.P35H 0.20 deleterious(0.05) benign(0.337) TCGA-R5-A7ZI-01 10 98362043 98362055 GAGGCAGCTCTCG - PIK3AP1 Frame_Shift_Del p.P781Hfs*26 0.19 TCGA-R5-A7ZI-01 11 1018234 1018234 T C MUC6 Missense_Mutation p.T1523A 0.11 unknown(0) TCGA-R5-A7ZI-01 11 102713491 102713491 G A MMP3 Missense_Mutation p.R88C 0.14 deleterious(0.01) benign(0.25) TCGA-R5-A7ZI-01 11 1029229 1029230 - G MUC6 Frame_Shift_Ins p.Q425Pfs*119 0.26 TCGA-R5-A7ZI-01 11 10327963 10327964 - T ADM Frame_Shift_Ins p.G113Rfs*18 0.14 TCGA-R5-A7ZI-01 11 105881548 105881548 A - MSANTD4 Frame_Shift_Del p.S33Pfs*10 0.14 TCGA-R5-A7ZI-01 11 105923924 105923925 - A KBTBD3 Frame_Shift_Ins p.H498Sfs*6 0.09 TCGA-R5-A7ZI-01 11 10631375 10631375 C A MRVI1 Missense_Mutation p.A491S 0.13 tolerated(0.54) benign(0.012) TCGA-R5-A7ZI-01 11 107299560 107299560 T - CWF19L2 Frame_Shift_Del p.E467Nfs*22 0.12 TCGA-R5-A7ZI-01 11 107673780 107673780 G T SLC35F2 Missense_Mutation p.L296M 0.15 deleterious(0) probably_damaging(1) TCGA-R5-A7ZI-01 11 108098416 108098416 A G ATM Missense_Mutation p.E22G 0.11 deleterious(0) probably_damaging(0.986) TCGA-R5-A7ZI-01 11 108175550 108175550 G A ATM Missense_Mutation p.R1882Q 0.28 tolerated(0.05) benign(0.014) TCGA-R5-A7ZI-01 11 1096349 1096349 C T MUC2 Missense_Mutation p.P2125L 0.13 unknown(0) TCGA-R5-A7ZI-01 11 111594795 111594795 A G SIK2 Missense_Mutation p.D908G 0.23 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-R5-A7ZI-01 11 113140866 113140866 G A NCAM1 Intron 0.18 TCGA-R5-A7ZI-01 11 113631622 113631622 C T ZW10 Missense_Mutation p.V87I 0.10 tolerated(0.07) benign(0.032) TCGA-R5-A7ZI-01 11 118895782 118895782 G A SLC37A4 Silent p.G398G 0.18 TCGA-R5-A7ZI-01 11 119045476 119045476 G A NLRX1 Silent p.T388T 0.15 TCGA-R5-A7ZI-01 11 119983095 119983095 T C TRIM29 3'UTR 0.10 TCGA-R5-A7ZI-01 11 121458834 121458834 A C SORL1 Missense_Mutation p.D1307A 0.08 deleterious(0) probably_damaging(0.999) TCGA-R5-A7ZI-01 11 122848518 122848518 C A BSX Missense_Mutation p.G181W 0.17 deleterious(0) possibly_damaging(0.523) TCGA-R5-A7ZI-01 11 124764211 124764211 C T ROBO4 Missense_Mutation p.E402K 0.19 tolerated(0.21) benign(0.439) TCGA-R5-A7ZI-01 11 1247973 1247973 G A MUC5B Missense_Mutation p.A110T 0.20 unknown(0) TCGA-R5-A7ZI-01 11 1266535 1266535 C A MUC5B Missense_Mutation p.L2809M 0.13 unknown(0) TCGA-R5-A7ZI-01 11 134055396 134055396 T A NCAPD3 Missense_Mutation p.I691F 0.12 deleterious(0.03) benign(0.379) TCGA-R5-A7ZI-01 11 16838690 16838690 G A PLEKHA7 Missense_Mutation p.S508L 0.26 deleterious(0) probably_damaging(0.981) TCGA-R5-A7ZI-01 11 17741491 17741491 C T MYOD1 Silent p.G54G 0.09 TCGA-R5-A7ZI-01 11 18158922 18158922 G T MRGPRX3 Missense_Mutation p.R58M 0.14 deleterious(0) probably_damaging(0.991) TCGA-R5-A7ZI-01 11 18359664 18359666 AAG - GTF2H1 In_Frame_Del p.E120del 0.15 TCGA-R5-A7ZI-01 11 19954970 19954970 G A NAV2 Missense_Mutation p.A417T 0.16 tolerated(0.34) benign(0.005) TCGA-R5-A7ZI-01 11 26587008 26587008 G T MUC15 Missense_Mutation p.P160H 0.10 tolerated_low_confidence(0.05) possibly_damaging(0.557) TCGA-R5-A7ZI-01 11 28119319 28119319 G A KIF18A Missense_Mutation p.T59I 0.25 tolerated(0.55) benign(0.009) TCGA-R5-A7ZI-01 11 2943692 2943692 C G SLC22A18 Missense_Mutation p.F331L 0.12 tolerated(0.29) benign(0.014) TCGA-R5-A7ZI-01 11 3069062 3069062 G A CARS Silent p.H65H 0.19 TCGA-R5-A7ZI-01 11 3115552 3115552 C T OSBPL5 Missense_Mutation p.G545D 0.06 deleterious(0) probably_damaging(0.998) TCGA-R5-A7ZI-01 11 31812317 31812317 G - PAX6 Frame_Shift_Del p.P389Hfs*7 0.30 TCGA-R5-A7ZI-01 11 33628255 33628255 T C KIAA1549L Missense_Mutation p.F1353L 0.21 deleterious(0.04) probably_damaging(0.995) TCGA-R5-A7ZI-01 11 35333963 35333963 G A SLC1A2 Missense_Mutation p.R115C 0.21 deleterious(0) probably_damaging(0.973) TCGA-R5-A7ZI-01 11 35641038 35641038 A G FJX1 Missense_Mutation p.D285G 0.10 deleterious(0) possibly_damaging(0.5) TCGA-R5-A7ZI-01 11 3688572 3688572 G A CHRNA10 Missense_Mutation p.A262V 0.14 deleterious(0) probably_damaging(0.953) TCGA-R5-A7ZI-01 11 43469553 43469553 A - TTC17 Frame_Shift_Del p.K891Nfs*21 0.12 TCGA-R5-A7ZI-01 11 45935921 45935921 C A PEX16 Missense_Mutation p.G214W 0.16 deleterious(0) probably_damaging(0.996) TCGA-R5-A7ZI-01 11 4626437 4626437 G A TRIM68 Missense_Mutation p.R100C 0.16 tolerated(0.1) possibly_damaging(0.697) TCGA-R5-A7ZI-01 11 46430154 46430154 G T AMBRA1 Silent p.T1014T 0.09 TCGA-R5-A7ZI-01 11 46780945 46780945 C T CKAP5 Missense_Mutation p.R1481H 0.09 tolerated(0.17) benign(0.001) TCGA-R5-A7ZI-01 11 47204022 47204022 C T PACSIN3 Missense_Mutation p.R48H 0.20 deleterious(0) possibly_damaging(0.613) TCGA-R5-A7ZI-01 11 490498 490498 C T PTDSS2 Silent p.N460N 0.19 TCGA-R5-A7ZI-01 11 49831504 49831504 T C RP11-707M1.1 RNA 0.13 TCGA-R5-A7ZI-01 11 49973999 49973999 G A OR4C13 Missense_Mutation p.E9K 0.15 deleterious_low_confidence(0.01) benign(0.191) TCGA-R5-A7ZI-01 11 55136028 55136028 T C OR4A15 Silent p.T223T 0.10 TCGA-R5-A7ZI-01 11 56128007 56128007 T C OR8J1 Silent p.Y95Y 0.11 TCGA-R5-A7ZI-01 11 56237177 56237177 A T OR5M3 Missense_Mutation p.V266E 0.18 deleterious(0) possibly_damaging(0.892) TCGA-R5-A7ZI-01 11 56310193 56310193 G T OR5M11 Missense_Mutation p.P181T 0.17 deleterious(0.01) probably_damaging(0.986) TCGA-R5-A7ZI-01 11 57077118 57077119 CT - TNKS1BP1 Frame_Shift_Del p.G1023Ifs*8 0.11 TCGA-R5-A7ZI-01 11 57426972 57426972 C T CLP1 Silent p.D8D 0.18 TCGA-R5-A7ZI-01 11 58920618 58920618 C T FAM111A Nonsense_Mutation p.R493* 0.29 TCGA-R5-A7ZI-01 11 61404325 61404325 C T RPLP0P2 RNA 0.11 TCGA-R5-A7ZI-01 11 619026 619026 C T CDHR5 Silent p.R511R 0.19 TCGA-R5-A7ZI-01 11 6291359 6291359 G A CCKBR Missense_Mutation p.A149T 0.11 deleterious(0) probably_damaging(0.981) TCGA-R5-A7ZI-01 11 63175629 63175629 C T SLC22A9 Missense_Mutation p.A445V 0.18 tolerated(0.71) benign(0.022) TCGA-R5-A7ZI-01 11 63365630 63365630 C T PLA2G16 Silent p.E7E 0.10 TCGA-R5-A7ZI-01 11 63525638 63525638 A G RTN3 Missense_Mutation p.K1022E 0.16 deleterious(0) probably_damaging(0.997) TCGA-R5-A7ZI-01 11 64897217 64897217 C T SYVN1 Missense_Mutation p.V527M 0.10 tolerated(0.07) unknown(0) TCGA-R5-A7ZI-01 11 65265830 65265830 C T MALAT1 RNA 0.17 TCGA-R5-A7ZI-01 11 65304579 65304579 G A SCYL1 Missense_Mutation p.E647K 0.08 tolerated(0.06) possibly_damaging(0.509) TCGA-R5-A7ZI-01 11 65319844 65319844 C T LTBP3 Missense_Mutation p.R407H 0.20 deleterious(0) probably_damaging(0.999) TCGA-R5-A7ZI-01 11 65417880 65417880 C A SIPA1 Missense_Mutation p.P971H 0.11 deleterious(0.02) benign(0.376) TCGA-R5-A7ZI-01 11 65480402 65480402 G A KAT5 Missense_Mutation p.R86H 0.19 deleterious(0) probably_damaging(1) TCGA-R5-A7ZI-01 11 65648964 65648964 G - CTSW Frame_Shift_Del p.V88* 0.24 TCGA-R5-A7ZI-01 11 65685482 65685482 G A C11orf68 Silent p.P110P 0.16 TCGA-R5-A7ZI-01 11 66476462 66476462 G A SPTBN2 Silent p.L368L 0.09 TCGA-R5-A7ZI-01 11 66476463 66476463 C A SPTBN2 Silent p.V367V 0.09 TCGA-R5-A7ZI-01 11 66633713 66633713 C T PC Missense_Mutation p.R377Q 0.16 deleterious(0) probably_damaging(1) TCGA-R5-A7ZI-01 11 71728760 71728762 CTT - NUMA1 In_Frame_Del p.K364del 0.33 TCGA-R5-A7ZI-01 11 75501753 75501753 T G DGAT2 Missense_Mutation p.F136V 0.14 tolerated(0.07) possibly_damaging(0.516) TCGA-R5-A7ZI-01 11 77066837 77066837 G A PAK1 Silent p.D216D 0.19 TCGA-R5-A7ZI-01 11 77612530 77612530 A T INTS4 Missense_Mutation p.I722K 0.17 deleterious(0) benign(0.247) TCGA-R5-A7ZI-01 11 7818460 7818460 G A OR5P2 Silent p.T10T 0.25 TCGA-R5-A7ZI-01 11 802249 802249 G A PIDD Silent p.D374D 0.47 TCGA-R5-A7ZI-01 11 82643629 82643629 C T C11orf82 Missense_Mutation p.P417S 0.15 deleterious(0) probably_damaging(1) TCGA-R5-A7ZI-01 11 836771 836771 C T CD151 Silent p.Y93Y 0.16 TCGA-R5-A7ZI-01 11 86662342 86662342 A C FZD4 Missense_Mutation p.L486V 0.15 tolerated(1) benign(0.023) TCGA-R5-A7ZI-01 11 8706388 8706388 T C RPL27A Silent p.N89N 0.16 TCGA-R5-A7ZI-01 11 88068108 88068108 A - CTSC Frame_Shift_Del p.F105Lfs*10 0.12 TCGA-R5-A7ZI-01 11 92614050 92614050 C T FAT3 Missense_Mutation p.T4094M 0.14 benign(0.042) TCGA-R5-A7ZI-01 11 94731152 94731152 C A KDM4D Missense_Mutation p.L206I 0.14 deleterious(0) benign(0.087) TCGA-R5-A7ZI-01 12 105519872 105519872 C T KIAA1033 Missense_Mutation p.R293W 0.34 deleterious(0) probably_damaging(0.993) TCGA-R5-A7ZI-01 12 107105269 107105269 T C RFX4 Missense_Mutation p.S334P 0.18 deleterious(0) possibly_damaging(0.801) TCGA-R5-A7ZI-01 12 108603925 108603925 C T WSCD2 Silent p.F175F 0.15 TCGA-R5-A7ZI-01 12 109865337 109865337 G A MYO1H Missense_Mutation p.R616Q 0.34 deleterious(0.02) probably_damaging(0.999) TCGA-R5-A7ZI-01 12 111093115 111093115 T C HVCN1 Missense_Mutation p.D112G 0.07 deleterious(0) probably_damaging(0.998) TCGA-R5-A7ZI-01 12 117158200 117158200 G A C12orf49 Silent p.N107N 0.34 TCGA-R5-A7ZI-01 12 117718591 117718591 G A NOS1 Missense_Mutation p.A488V 0.13 deleterious(0) probably_damaging(0.963) TCGA-R5-A7ZI-01 12 120534975 120534975 C - RAB35 3'UTR 0.21 TCGA-R5-A7ZI-01 12 123424729 123424729 G - ABCB9 Frame_Shift_Del p.L558Wfs*24 0.27 TCGA-R5-A7ZI-01 12 123444645 123444645 C T ABCB9 Silent p.S46S 0.23 TCGA-R5-A7ZI-01 12 123983969 123983969 T G RILPL1 Missense_Mutation p.E192A 0.11 deleterious(0) possibly_damaging(0.645) TCGA-R5-A7ZI-01 12 124265816 124265816 A G DNAH10 Missense_Mutation p.N210D 0.16 benign(0.028) TCGA-R5-A7ZI-01 12 124856755 124856755 G C NCOR2 Missense_Mutation p.P874A 0.16 benign(0.007) TCGA-R5-A7ZI-01 12 12496235 12496235 C - MANSC1 Frame_Shift_Del p.G5Efs*5 0.10 TCGA-R5-A7ZI-01 12 13061473 13061473 G A GPRC5A Missense_Mutation p.R97H 0.12 deleterious(0.01) probably_damaging(1) TCGA-R5-A7ZI-01 12 132394352 132394352 C T ULK1 Silent p.Y233Y 0.33 TCGA-R5-A7ZI-01 12 132404111 132404111 T C ULK1 Missense_Mutation p.C927R 0.15 tolerated(0.33) probably_damaging(0.988) TCGA-R5-A7ZI-01 12 133241032 133241032 T C POLE Missense_Mutation p.M829V 0.10 deleterious(0.01) possibly_damaging(0.558) TCGA-R5-A7ZI-01 12 133256109 133256109 G A POLE Silent p.S184S 0.31 TCGA-R5-A7ZI-01 12 133435729 133435729 G A CHFR Missense_Mutation p.A291V 0.07 tolerated(0.21) benign(0.002) TCGA-R5-A7ZI-01 12 14018982 14018982 T C GRIN2B Missense_Mutation p.H54R 0.11 tolerated(0.16) benign(0) TCGA-R5-A7ZI-01 12 14835998 14835998 T A GUCY2C Missense_Mutation p.T197S 0.17 tolerated(0.79) benign(0.004) TCGA-R5-A7ZI-01 12 14949850 14949850 A G WBP11 Missense_Mutation p.L93P 0.13 deleterious(0) unknown(0) TCGA-R5-A7ZI-01 12 15800153 15800153 C T EPS8 Silent p.A492A 0.21 TCGA-R5-A7ZI-01 12 18719951 18719951 A G PIK3C2G Missense_Mutation p.Y1283C 0.22 deleterious(0) probably_damaging(1) TCGA-R5-A7ZI-01 12 21621613 21621613 A - PYROXD1 Frame_Shift_Del p.N477Tfs*3 0.23 TCGA-R5-A7ZI-01 12 22005400 22005400 G T ABCC9 Missense_Mutation p.H849N 0.13 deleterious(0.01) probably_damaging(0.987) TCGA-R5-A7ZI-01 12 22643136 22643136 A G C2CD5 Silent p.L427L 0.16 TCGA-R5-A7ZI-01 12 30790054 30790054 C T IPO8 Missense_Mutation p.A853T 0.16 tolerated(0.21) benign(0.133) TCGA-R5-A7ZI-01 12 32898014 32898014 C A DNM1L 3'Flank 0.16 TCGA-R5-A7ZI-01 12 44781931 44781931 T A TMEM117 Missense_Mutation p.Y341N 0.12 deleterious(0.03) possibly_damaging(0.891) TCGA-R5-A7ZI-01 12 44926491 44926491 G T NELL2 Nonsense_Mutation p.C609* 0.23 TCGA-R5-A7ZI-01 12 45784249 45784249 A G ANO6 Missense_Mutation p.I473V 0.15 tolerated(0.51) benign(0.004) TCGA-R5-A7ZI-01 12 46230405 46230405 C T ARID2 Missense_Mutation p.R247C 0.12 tolerated(0.05) probably_damaging(0.984) TCGA-R5-A7ZI-01 12 49176915 49176915 G A ADCY6 Silent p.G101G 0.07 TCGA-R5-A7ZI-01 12 49399108 49399108 C T PRKAG1 Missense_Mutation p.R106H 0.30 tolerated(0.06) benign(0.008) TCGA-R5-A7ZI-01 12 49448480 49448480 G - KMT2D Frame_Shift_Del p.H77Qfs*53 0.17 TCGA-R5-A7ZI-01 12 50571027 50571027 T A LIMA1 Missense_Mutation p.Q701H 0.14 tolerated(0.12) benign(0.026) TCGA-R5-A7ZI-01 12 51126195 51126195 C T DIP2B Missense_Mutation p.A1286V 0.20 deleterious(0) probably_damaging(0.999) TCGA-R5-A7ZI-01 12 52307539 52307539 C T ACVRL1 Silent p.G170G 0.11 TCGA-R5-A7ZI-01 12 52826912 52826912 C T KRT75 Missense_Mutation p.R208Q 0.15 tolerated(0.05) possibly_damaging(0.507) TCGA-R5-A7ZI-01 12 53045793 53045793 C T KRT2 Missense_Mutation p.R45H 0.23 deleterious(0.01) unknown(0) TCGA-R5-A7ZI-01 12 53225281 53225281 G A KRT79 Missense_Mutation p.R203W 0.14 deleterious(0.01) probably_damaging(0.934) TCGA-R5-A7ZI-01 12 53291203 53291203 C T KRT8 3'UTR 0.19 TCGA-R5-A7ZI-01 12 53700875 53700875 C T C12orf10 Missense_Mutation p.A358V 0.29 tolerated(0.19) benign(0.167) TCGA-R5-A7ZI-01 12 53819001 53819001 G C AMHR2 Silent p.L159L 0.12 TCGA-R5-A7ZI-01 12 54797443 54797443 C T ITGA5 Missense_Mutation p.R581Q 0.18 tolerated(0.7) benign(0.011) TCGA-R5-A7ZI-01 12 55356248 55356248 G T TESPA1 Missense_Mutation p.S478R 0.11 deleterious_low_confidence(0) benign(0.003) TCGA-R5-A7ZI-01 12 55356792 55356792 C T TESPA1 Missense_Mutation p.R297Q 0.23 deleterious(0.02) benign(0.433) TCGA-R5-A7ZI-01 12 56092603 56092603 G T ITGA7 Missense_Mutation p.L301M 0.26 deleterious(0.02) probably_damaging(0.979) TCGA-R5-A7ZI-01 12 56716262 56716262 A G PAN2 Missense_Mutation p.V885A 0.15 tolerated(0.46) probably_damaging(0.977) TCGA-R5-A7ZI-01 12 57485292 57485292 C T NAB2 Silent p.R156R 0.16 TCGA-R5-A7ZI-01 12 57663564 57663564 G A R3HDM2 Missense_Mutation p.P506S 0.35 tolerated(0.66) benign(0.089) TCGA-R5-A7ZI-01 12 6701694 6701694 G A CHD4 Missense_Mutation p.A938V 0.13 deleterious(0) probably_damaging(0.918) TCGA-R5-A7ZI-01 12 6753399 6753399 T A ACRBP Missense_Mutation p.E283V 0.33 deleterious(0.02) possibly_damaging(0.848) TCGA-R5-A7ZI-01 12 6909477 6909477 C A CD4 Silent p.L18L 0.30 TCGA-R5-A7ZI-01 12 69265638 69265638 T C CPM Missense_Mutation p.I119M 0.17 deleterious(0.02) possibly_damaging(0.781) TCGA-R5-A7ZI-01 12 80660383 80660383 T G OTOGL Missense_Mutation p.F784V 0.09 tolerated(0.54) probably_damaging(0.989) TCGA-R5-A7ZI-01 12 81110787 81110787 C T MYF5 5'UTR 0.13 TCGA-R5-A7ZI-01 12 8212315 8212315 G T C3AR1 Missense_Mutation p.P156H 0.12 deleterious(0) probably_damaging(1) TCGA-R5-A7ZI-01 12 89744403 89744403 T G DUSP6 Missense_Mutation p.N267T 0.15 deleterious(0) probably_damaging(0.981) TCGA-R5-A7ZI-01 12 95918499 95918499 A G USP44 Missense_Mutation p.C564R 0.14 tolerated(0.33) possibly_damaging(0.532) TCGA-R5-A7ZI-01 12 96292432 96292432 T - CCDC38 Frame_Shift_Del p.A150Qfs*24 0.12 TCGA-R5-A7ZI-01 12 97137663 97137663 G A C12orf55 Missense_Mutation p.R2511Q 0.13 tolerated(0.42) benign(0.003) TCGA-R5-A7ZI-01 13 101997642 101997642 C A NALCN Silent p.L258L 0.17 TCGA-R5-A7ZI-01 13 22095397 22095397 C T MICU2 Missense_Mutation p.R195K 0.13 tolerated(1) benign(0) TCGA-R5-A7ZI-01 13 24443524 24443524 C T MIPEP Missense_Mutation p.E284K 0.21 tolerated(0.13) benign(0.062) TCGA-R5-A7ZI-01 13 24470982 24470982 C T C1QTNF9B Silent p.A48A 0.16 TCGA-R5-A7ZI-01 13 25895204 25895204 T C NUPL1 Silent p.I308I 0.20 TCGA-R5-A7ZI-01 13 26153033 26153033 G A ATP8A2 Silent p.T621T 0.21 TCGA-R5-A7ZI-01 13 28636185 28636185 G T FLT3 Missense_Mutation p.L63I 0.14 deleterious_low_confidence(0.04) possibly_damaging(0.579) TCGA-R5-A7ZI-01 13 28885867 28885867 A G FLT1 Silent p.D1165D 0.19 TCGA-R5-A7ZI-01 13 29600665 29600665 C A MTUS2 Silent p.S620S 0.36 TCGA-R5-A7ZI-01 13 30107025 30107025 G A SLC7A1 Silent p.N155N 0.15 TCGA-R5-A7ZI-01 13 32811640 32811640 C T FRY Nonsense_Mutation p.Q1979* 0.08 TCGA-R5-A7ZI-01 13 33258092 33258092 A - PDS5B Frame_Shift_Del p.K380Rfs*14 0.18 TCGA-R5-A7ZI-01 13 37539862 37539862 C T ALG5 Missense_Mutation p.R208H 0.20 deleterious(0) probably_damaging(0.999) TCGA-R5-A7ZI-01 13 39261553 39261553 G A FREM2 Silent p.P24P 0.38 TCGA-R5-A7ZI-01 13 39420860 39420860 G A FREM2 Splice_Site p.X2057_splice 0.18 TCGA-R5-A7ZI-01 13 46918923 46918923 G A KIAA0226L Missense_Mutation p.T610M 0.23 deleterious(0.01) probably_damaging(0.953) TCGA-R5-A7ZI-01 13 50080797 50080798 - A PHF11 Frame_Shift_Ins p.R43Kfs*13 0.16 TCGA-R5-A7ZI-01 13 52605215 52605215 C T UTP14C Missense_Mutation p.R759C 0.15 deleterious_low_confidence(0.05) benign(0.003) TCGA-R5-A7ZI-01 13 52971586 52971586 C T THSD1 Missense_Mutation p.V268I 0.23 tolerated(0.5) benign(0.021) TCGA-R5-A7ZI-01 13 58299183 58299183 C A PCDH17 Missense_Mutation p.L1079M 0.16 tolerated_low_confidence(0.15) possibly_damaging(0.483) TCGA-R5-A7ZI-01 13 78475267 78475267 A - EDNRB Frame_Shift_Del p.Y383Ifs*3 0.09 TCGA-R5-A7ZI-01 13 95229654 95229654 C A TGDS Missense_Mutation p.M285I 0.14 tolerated(0.51) benign(0) TCGA-R5-A7ZI-01 13 99092984 99092984 G A FARP1 Missense_Mutation p.R897H 0.15 tolerated(0.22) benign(0.014) TCGA-R5-A7ZI-01 14 102457868 102457868 T C DYNC1H1 Missense_Mutation p.V958A 0.18 benign(0.001) TCGA-R5-A7ZI-01 14 102516189 102516189 A G DYNC1H1 Missense_Mutation p.T4552A 0.11 benign(0.001) TCGA-R5-A7ZI-01 14 103958236 103958236 G A MARK3 Missense_Mutation p.R570Q 0.19 deleterious(0.04) possibly_damaging(0.612) TCGA-R5-A7ZI-01 14 105407425 105407425 T G AHNAK2 Missense_Mutation p.E4788A 0.14 benign(0.318) TCGA-R5-A7ZI-01 14 105412665 105412665 C A AHNAK2 Missense_Mutation p.Q3041H 0.18 benign(0.028) TCGA-R5-A7ZI-01 14 105417087 105417087 G A AHNAK2 Silent p.S1567S 0.24 TCGA-R5-A7ZI-01 14 106321268 106321268 T C IGHM Missense_Mutation p.K241E 0.17 tolerated(0.08) benign(0.418) TCGA-R5-A7ZI-01 14 20483290 20483290 T C OR4K14 Silent p.R21R 0.27 TCGA-R5-A7ZI-01 14 20692079 20692079 A G OR11H6 Missense_Mutation p.R71G 0.14 deleterious(0.04) benign(0.028) TCGA-R5-A7ZI-01 14 22133680 22133680 T C OR4E2 Silent p.T128T 0.19 TCGA-R5-A7ZI-01 14 23415830 23415830 C A HAUS4 Missense_Mutation p.E332D 0.24 tolerated(0.22) benign(0.034) TCGA-R5-A7ZI-01 14 23817780 23817780 G A SLC22A17 Silent p.V209V 0.17 TCGA-R5-A7ZI-01 14 23896982 23896982 C T MYH7 Missense_Mutation p.R567H 0.17 deleterious(0) probably_damaging(0.982) TCGA-R5-A7ZI-01 14 33291960 33291960 G A AKAP6 Silent p.E1647E 0.13 TCGA-R5-A7ZI-01 14 39649730 39649730 G A PNN Missense_Mutation p.E273K 0.24 tolerated(0.06) benign(0.2) TCGA-R5-A7ZI-01 14 52734866 52734866 A G PTGDR Missense_Mutation p.M112V 0.04 deleterious(0) probably_damaging(0.996) TCGA-R5-A7ZI-01 14 55251303 55251303 C T SAMD4A Missense_Mutation p.S698L 0.12 deleterious(0) probably_damaging(0.996) TCGA-R5-A7ZI-01 14 60749519 60749519 G A PPM1A Missense_Mutation p.R106H 0.18 deleterious(0.03) probably_damaging(1) TCGA-R5-A7ZI-01 14 64644116 64644116 G T SYNE2 Missense_Mutation p.S5824I 0.16 benign(0.057) TCGA-R5-A7ZI-01 14 65008762 65008762 G A HSPA2 Missense_Mutation p.V399M 0.16 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-R5-A7ZI-01 14 69256455 69256455 C - ZFP36L1 Frame_Shift_Del p.G271Vfs*36 0.18 TCGA-R5-A7ZI-01 14 73572736 73572736 G A RBM25 Missense_Mutation p.E442K 0.25 unknown(0) TCGA-R5-A7ZI-01 14 73637683 73637683 T C PSEN1 Missense_Mutation p.V89A 0.19 deleterious(0) probably_damaging(0.999) TCGA-R5-A7ZI-01 14 74205402 74205402 A G ELMSAN1 Missense_Mutation p.V437A 0.13 tolerated(0.75) benign(0.001) TCGA-R5-A7ZI-01 14 74404384 74404384 G A FAM161B Missense_Mutation p.A592V 0.15 tolerated(0.29) benign(0.031) TCGA-R5-A7ZI-01 14 75230626 75230626 C - YLPM1 Frame_Shift_Del p.P147Lfs*72 0.27 TCGA-R5-A7ZI-01 14 76621076 76621076 C T GPATCH2L Nonsense_Mutation p.R124* 0.22 TCGA-R5-A7ZI-01 14 81609768 81609768 C A TSHR Missense_Mutation p.L456M 0.13 deleterious(0) probably_damaging(1) TCGA-R5-A7ZI-01 14 90755098 90755098 G A NRDE2 Missense_Mutation p.A874V 0.20 deleterious(0) possibly_damaging(0.885) TCGA-R5-A7ZI-01 14 93299613 93299613 C T GOLGA5 Silent p.L622L 0.18 TCGA-R5-A7ZI-01 14 94512106 94512106 G A OTUB2 Silent p.T181T 0.23 TCGA-R5-A7ZI-01 15 20170039 20170039 C G IGHV1OR15-9 Missense_Mutation p.S78T 0.14 tolerated(0.62) benign(0.022) TCGA-R5-A7ZI-01 15 22368864 22368864 T A OR4M2 Missense_Mutation p.C97S 0.14 deleterious(0) probably_damaging(0.997) TCGA-R5-A7ZI-01 15 23931385 23931385 G A NDN 3'UTR 0.17 TCGA-R5-A7ZI-01 15 25325290 25325290 G C SNORD116-14 RNA 0.15 TCGA-R5-A7ZI-01 15 28326980 28326980 G A OCA2 Missense_Mutation p.A14V 0.15 tolerated_low_confidence(0.51) benign(0) TCGA-R5-A7ZI-01 15 28499629 28499629 T - HERC2 Frame_Shift_Del p.E970Kfs*55 0.11 TCGA-R5-A7ZI-01 15 41060179 41060179 C T DNAJC17 Missense_Mutation p.A292T 0.20 tolerated(0.06) benign(0.002) TCGA-R5-A7ZI-01 15 41373222 41373222 C T INO80 Missense_Mutation p.R308Q 0.21 deleterious(0.01) benign(0.18) TCGA-R5-A7ZI-01 15 42134464 42134466 CCA - PLA2G4B In_Frame_Del p.T464del 0.27 TCGA-R5-A7ZI-01 15 42136708 42136708 C T PLA2G4B Missense_Mutation p.R538W 0.13 deleterious(0) probably_damaging(0.999) TCGA-R5-A7ZI-01 15 43821402 43821402 G A MAP1A Silent p.V2577V 0.30 TCGA-R5-A7ZI-01 15 45411386 45411386 T C DUOXA1 Missense_Mutation p.Q317R 0.18 tolerated(0.13) possibly_damaging(0.577) TCGA-R5-A7ZI-01 15 48427102 48427102 C T SLC24A5 Missense_Mutation p.P171S 0.19 deleterious(0.03) probably_damaging(0.99) TCGA-R5-A7ZI-01 15 49327568 49327568 C T SECISBP2L Missense_Mutation p.R164Q 0.11 deleterious(0.01) possibly_damaging(0.803) TCGA-R5-A7ZI-01 15 49926922 49926922 A - DTWD1 Frame_Shift_Del p.I202Lfs*4 0.11 TCGA-R5-A7ZI-01 15 50769164 50769164 G A USP8 Missense_Mutation p.R323H 0.16 tolerated(0.14) benign(0.001) TCGA-R5-A7ZI-01 15 53992111 53992111 C T WDR72 Missense_Mutation p.C534Y 0.19 deleterious(0) probably_damaging(0.993) TCGA-R5-A7ZI-01 15 56996377 56996377 G A ZNF280D Silent p.D39D 0.26 TCGA-R5-A7ZI-01 15 62202416 62202416 T A VPS13C Missense_Mutation p.N2935I 0.17 deleterious(0) probably_damaging(0.953) TCGA-R5-A7ZI-01 15 63881043 63881043 A - USP3 Intron 0.16 TCGA-R5-A7ZI-01 15 63970434 63970434 T C HERC1 Missense_Mutation p.D2227G 0.14 possibly_damaging(0.583) TCGA-R5-A7ZI-01 15 64067604 64067604 A G HERC1 Silent p.D73D 0.21 TCGA-R5-A7ZI-01 15 65350934 65350934 G A RASL12 Missense_Mutation p.R86C 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-R5-A7ZI-01 15 69548164 69548164 C T GLCE Missense_Mutation p.R7W 0.19 deleterious_low_confidence(0) probably_damaging(0.94) TCGA-R5-A7ZI-01 15 72057383 72057383 A C THSD4 Missense_Mutation p.T872P 0.17 deleterious(0.04) possibly_damaging(0.905) TCGA-R5-A7ZI-01 15 72636308 72636308 G A HEXA 3'UTR 0.25 TCGA-R5-A7ZI-01 15 74564053 74564053 C T CCDC33 Missense_Mutation p.R186W 0.20 deleterious(0.04) benign(0.14) TCGA-R5-A7ZI-01 15 75137840 75137840 C T SCAMP2 Missense_Mutation p.V277M 0.14 deleterious(0) possibly_damaging(0.861) TCGA-R5-A7ZI-01 15 76182787 76182787 G A UBE2Q2 Missense_Mutation p.G299D 0.17 tolerated(0.11) benign(0.023) TCGA-R5-A7ZI-01 15 76430195 76430195 G A C15orf27 Silent p.S62S 0.23 TCGA-R5-A7ZI-01 15 78316588 78316588 G A TBC1D2B Silent p.G460G 0.20 TCGA-R5-A7ZI-01 15 78757687 78757687 G T IREB2 Missense_Mutation p.D123Y 0.06 deleterious(0) probably_damaging(1) TCGA-R5-A7ZI-01 15 78882366 78882366 T - CHRNA5 Frame_Shift_Del p.F213Lfs*9 0.11 TCGA-R5-A7ZI-01 15 81235428 81235428 C T KIAA1199 Missense_Mutation p.A1281V 0.16 tolerated(0.14) benign(0.047) TCGA-R5-A7ZI-01 15 83240328 83240328 T - CPEB1 Intron 0.18 TCGA-R5-A7ZI-01 15 85488082 85488082 C T SLC28A1 Missense_Mutation p.R620C 0.07 deleterious(0.02) benign(0.007) TCGA-R5-A7ZI-01 15 89074728 89074728 C T DET1 Missense_Mutation p.R81H 0.15 tolerated(0.15) benign(0.037) TCGA-R5-A7ZI-01 15 89403663 89403663 T C ACAN Silent p.C2313C 0.12 TCGA-R5-A7ZI-01 15 90616367 90616367 G A ZNF710 Missense_Mutation p.R508Q 0.22 deleterious(0.02) probably_damaging(0.988) TCGA-R5-A7ZI-01 15 99901564 99901564 C T LRRC28 Missense_Mutation p.S240F 0.19 tolerated(0.68) benign(0.094) TCGA-R5-A7ZI-01 16 20807776 20807776 A - ACSM3 Frame_Shift_Del p.T549Lfs*11 0.20 TCGA-R5-A7ZI-01 16 21098282 21098282 G A DNAH3 Missense_Mutation p.A922V 0.17 tolerated(0.2) benign(0.057) TCGA-R5-A7ZI-01 16 27789226 27789226 C A KIAA0556 Silent p.V1579V 0.12 TCGA-R5-A7ZI-01 16 29897019 29897019 C T SEZ6L2 Silent p.S420S 0.21 TCGA-R5-A7ZI-01 16 3026700 3026700 G A PKMYT1 Missense_Mutation p.R115C 0.15 deleterious(0.04) benign(0.011) TCGA-R5-A7ZI-01 16 30616697 30616697 G A ZNF689 Nonsense_Mutation p.R131* 0.18 TCGA-R5-A7ZI-01 16 30664136 30664136 G A PRR14 Missense_Mutation p.R96Q 0.10 tolerated_low_confidence(1) benign(0.001) TCGA-R5-A7ZI-01 16 30899305 30899305 C T BCL7C Missense_Mutation p.E179K 0.24 tolerated(0.06) possibly_damaging(0.651) TCGA-R5-A7ZI-01 16 31089802 31089802 T C ZNF646 Silent p.A719A 0.18 TCGA-R5-A7ZI-01 16 31230709 31230709 C T TRIM72 Missense_Mutation p.R196C 0.10 tolerated(0.06) possibly_damaging(0.667) TCGA-R5-A7ZI-01 16 4312624 4312624 G A TFAP4 Silent p.N56N 0.27 TCGA-R5-A7ZI-01 16 4755158 4755158 G A ANKS3 Missense_Mutation p.P269L 0.16 deleterious(0) probably_damaging(0.925) TCGA-R5-A7ZI-01 16 49430497 49430497 C T C16orf78 Silent p.Y186Y 0.27 TCGA-R5-A7ZI-01 16 50642241 50642241 G A NKD1 Missense_Mutation p.E77K 0.18 tolerated(0.22) possibly_damaging(0.517) TCGA-R5-A7ZI-01 16 50707432 50707432 G A SNX20 Missense_Mutation p.A279V 0.19 tolerated(0.25) benign(0.002) TCGA-R5-A7ZI-01 16 51175647 51175647 G A SALL1 Silent p.G162G 0.11 TCGA-R5-A7ZI-01 16 55616974 55616974 G T LPCAT2 Missense_Mutation p.K533N 0.19 tolerated(1) benign(0) TCGA-R5-A7ZI-01 16 57012127 57012127 G A CETP Missense_Mutation p.R369H 0.19 tolerated(0.58) benign(0.001) TCGA-R5-A7ZI-01 16 57059835 57059835 T C NLRC5 Missense_Mutation p.L327P 0.13 deleterious(0) probably_damaging(1) TCGA-R5-A7ZI-01 16 570783 570783 G A RAB11FIP3 Missense_Mutation p.D739N 0.13 deleterious(0) probably_damaging(1) TCGA-R5-A7ZI-01 16 57147218 57147218 G A CPNE2 Missense_Mutation p.A67T 0.13 deleterious(0) benign(0.009) TCGA-R5-A7ZI-01 16 58550438 58550440 AGA - SETD6 In_Frame_Del p.K179del 0.20 TCGA-R5-A7ZI-01 16 67381358 67381358 A - LRRC36 Intron 0.19 TCGA-R5-A7ZI-01 16 68024785 68024785 G A DPEP2 Missense_Mutation p.S283L 0.16 deleterious(0.01) probably_damaging(1) TCGA-R5-A7ZI-01 16 719554 719554 C T RHOT2 Missense_Mutation p.A75V 0.17 deleterious(0) probably_damaging(0.993) TCGA-R5-A7ZI-01 16 74444453 74444454 - A CLEC18B Frame_Shift_Ins p.G398Wfs*4 0.13 TCGA-R5-A7ZI-01 16 81121264 81121264 C T GCSH Silent p.A78A 0.12 TCGA-R5-A7ZI-01 16 86544464 86544464 C T FOXF1 Missense_Mutation p.R97C 0.10 deleterious(0) probably_damaging(0.998) TCGA-R5-A7ZI-01 16 86585858 86585858 G A MTHFSD Intron 0.42 TCGA-R5-A7ZI-01 16 89703638 89703638 G - DPEP1 Frame_Shift_Del p.V208Sfs*13 0.14 TCGA-R5-A7ZI-01 17 10209932 10209932 A G MYH13 Silent p.A1770A 0.15 TCGA-R5-A7ZI-01 17 10317533 10317533 G A MYH8 Silent p.D328D 0.16 TCGA-R5-A7ZI-01 17 10431117 10431117 C T MYH2 Silent p.Q1273Q 0.11 TCGA-R5-A7ZI-01 17 11584066 11584066 A - DNAH9 Frame_Shift_Del p.K1203Rfs*6 0.24 TCGA-R5-A7ZI-01 17 15341281 15341281 A G CDRT4 Missense_Mutation p.F89L 0.10 tolerated(0.67) benign(0.006) TCGA-R5-A7ZI-01 17 15532155 15532155 C T TRIM16 Missense_Mutation p.G490D 0.12 tolerated(0.63) benign(0.02) TCGA-R5-A7ZI-01 17 18010524 18010524 T C DRG2 Silent p.H355H 0.17 TCGA-R5-A7ZI-01 17 18217965 18217965 T - TOP3A Frame_Shift_Del p.N43Tfs*16 0.22 TCGA-R5-A7ZI-01 17 1840661 1840661 T G RTN4RL1 Missense_Mutation p.Q152P 0.17 deleterious(0) probably_damaging(1) TCGA-R5-A7ZI-01 17 20156834 20156834 G A SPECC1 Missense_Mutation p.S872N 0.06 tolerated(0.12) benign(0.007) TCGA-R5-A7ZI-01 17 21319173 21319173 C T KCNJ12 Silent p.D173D 0.05 TCGA-R5-A7ZI-01 17 2186147 2186147 G A SMG6 Nonsense_Mutation p.Q819* 0.20 TCGA-R5-A7ZI-01 17 26603807 26603807 A G AC061975.8 5'Flank 0.08 TCGA-R5-A7ZI-01 17 31318961 31318961 T C SPACA3 Missense_Mutation p.V2A 0.09 deleterious_low_confidence(0) benign(0.153) TCGA-R5-A7ZI-01 17 32959854 32959854 C T TMEM132E Silent p.P448P 0.17 TCGA-R5-A7ZI-01 17 34257297 34257297 G A RDM1 Intron 0.14 TCGA-R5-A7ZI-01 17 36487231 36487231 G T GPR179 Missense_Mutation p.P741T 0.17 tolerated(0.71) benign(0.215) TCGA-R5-A7ZI-01 17 37331549 37331549 C T CACNB1 Missense_Mutation p.R565Q 0.20 deleterious_low_confidence(0.04) benign(0.223) TCGA-R5-A7ZI-01 17 37342222 37342222 C T CACNB1 Intron 0.21 TCGA-R5-A7ZI-01 17 38711707 38711707 T C CCR7 Missense_Mutation p.S142G 0.33 deleterious(0.03) benign(0.155) TCGA-R5-A7ZI-01 17 39680441 39680441 C T KRT19 Missense_Mutation p.R301H 0.25 tolerated(0.05) benign(0.061) TCGA-R5-A7ZI-01 17 39976544 39976544 G A FKBP10 Missense_Mutation p.V363M 0.19 deleterious(0) probably_damaging(0.993) TCGA-R5-A7ZI-01 17 41004674 41004674 C - AOC3 Frame_Shift_Del p.L440Cfs*46 0.13 TCGA-R5-A7ZI-01 17 41290805 41290805 C T NBR2 RNA 0.11 TCGA-R5-A7ZI-01 17 41852215 41852215 T C DUSP3 Missense_Mutation p.T73A 0.13 deleterious(0) probably_damaging(0.985) TCGA-R5-A7ZI-01 17 41888507 41888507 G A MPP3 Missense_Mutation p.A441V 0.21 tolerated(0.4) benign(0.038) TCGA-R5-A7ZI-01 17 42462546 42462546 C T ITGA2B Missense_Mutation p.G219D 0.12 deleterious(0) probably_damaging(0.987) TCGA-R5-A7ZI-01 17 45915935 45915935 G A SCRN2 Silent p.P300P 0.23 TCGA-R5-A7ZI-01 17 45994101 45994101 G A SP2 Missense_Mutation p.A222T 0.13 tolerated(1) benign(0) TCGA-R5-A7ZI-01 17 4686195 4686195 C - TM4SF5 Frame_Shift_Del p.P149Lfs*8 0.12 TCGA-R5-A7ZI-01 17 47115648 47115648 C T IGF2BP1 Missense_Mutation p.R174W 0.15 deleterious(0) benign(0.246) TCGA-R5-A7ZI-01 17 4841478 4841478 G T SLC25A11 Silent p.A236A 0.30 TCGA-R5-A7ZI-01 17 48736628 48736630 GGA - ABCC3 In_Frame_Del p.E237del 0.18 TCGA-R5-A7ZI-01 17 48917979 48917979 C T WFIKKN2 Missense_Mutation p.R444C 0.14 deleterious(0.03) benign(0.386) TCGA-R5-A7ZI-01 17 51901222 51901222 C T KIF2B Silent p.N276N 0.26 TCGA-R5-A7ZI-01 17 5359328 5359328 C A DHX33 Missense_Mutation p.G342W 0.22 deleterious(0) possibly_damaging(0.7) TCGA-R5-A7ZI-01 17 56291726 56291726 G A MKS1 Missense_Mutation p.R180C 0.15 deleterious(0) possibly_damaging(0.836) TCGA-R5-A7ZI-01 17 6441390 6441390 G A PITPNM3 Missense_Mutation p.P12L 0.08 tolerated(0.13) unknown(0) TCGA-R5-A7ZI-01 17 65722733 65722733 A G NOL11 Silent p.A274A 0.21 TCGA-R5-A7ZI-01 17 65732026 65732026 A G NOL11 Missense_Mutation p.Y314C 0.11 deleterious(0) benign(0.123) TCGA-R5-A7ZI-01 17 67132145 67132145 T C ABCA6 Intron 0.16 TCGA-R5-A7ZI-01 17 68171193 68171193 C T KCNJ2 Nonsense_Mutation p.R5* 0.17 TCGA-R5-A7ZI-01 17 7189157 7189157 C T SLC2A4 Missense_Mutation p.A419V 0.10 deleterious(0) probably_damaging(0.998) TCGA-R5-A7ZI-01 17 72926709 72926709 A G OTOP2 Missense_Mutation p.I327V 0.19 tolerated(0.06) benign(0.005) TCGA-R5-A7ZI-01 17 73552159 73552159 C T LLGL2 Silent p.S36S 0.11 TCGA-R5-A7ZI-01 17 73729696 73729696 G A ITGB4 Missense_Mutation p.G527D 0.18 tolerated(0.07) probably_damaging(0.996) TCGA-R5-A7ZI-01 17 74042147 74042147 A G SRP68 Missense_Mutation p.L424P 0.15 deleterious(0) probably_damaging(0.997) TCGA-R5-A7ZI-01 17 74077668 74077669 TT - ZACN Frame_Shift_Del p.L238Gfs*10 0.19 TCGA-R5-A7ZI-01 17 74289206 74289206 A G QRICH2 Silent p.G368G 0.18 TCGA-R5-A7ZI-01 17 74395811 74395811 A G UBE2O Silent p.G449G 0.12 TCGA-R5-A7ZI-01 17 76134211 76134212 - C TMC8 Frame_Shift_Ins p.L494Pfs*7 0.17 TCGA-R5-A7ZI-01 17 77043726 77043726 G - C1QTNF1 Frame_Shift_Del p.A136Pfs*30 0.15 TCGA-R5-A7ZI-01 17 79427925 79427925 C - RP11-1055B8.7 Frame_Shift_Del p.T2081Rfs*16 0.15 TCGA-R5-A7ZI-01 17 80050395 80050395 A G FASN Missense_Mutation p.I322T 0.33 deleterious(0) probably_damaging(0.996) TCGA-R5-A7ZI-01 17 8216322 8216322 G - ARHGEF15 Frame_Shift_Del p.G230Afs*106 0.10 TCGA-R5-A7ZI-01 17 8658872 8658872 A T SPDYE4 Missense_Mutation p.W151R 0.15 deleterious(0.03) benign(0.288) TCGA-R5-A7ZI-01 18 12360045 12360045 G A AFG3L2 Silent p.Y211Y 0.13 TCGA-R5-A7ZI-01 18 12464938 12464938 G A SPIRE1 Missense_Mutation p.S475L 0.09 tolerated(0.11) probably_damaging(0.985) TCGA-R5-A7ZI-01 18 13826089 13826089 G A MC5R Missense_Mutation p.A109T 0.33 tolerated(0.63) benign(0.015) TCGA-R5-A7ZI-01 18 39613805 39613805 G A PIK3C3 Missense_Mutation p.A575T 0.14 tolerated(0.09) benign(0.006) TCGA-R5-A7ZI-01 18 43535015 43535015 A G EPG5 Missense_Mutation p.V118A 0.35 tolerated_low_confidence(0.34) benign(0.004) TCGA-R5-A7ZI-01 18 44555292 44555292 C T TCEB3C Missense_Mutation p.E308K 0.04 deleterious(0.03) probably_damaging(0.971) TCGA-R5-A7ZI-01 18 45556141 45556141 G A ZBTB7C Silent p.C450C 0.10 TCGA-R5-A7ZI-01 18 47777208 47777208 C T CCDC11 Missense_Mutation p.E306K 0.15 deleterious(0) possibly_damaging(0.756) TCGA-R5-A7ZI-01 18 47810263 47810265 CCT - CXXC1 Splice_Site p.X475_splice 0.14 TCGA-R5-A7ZI-01 18 48190851 48190851 G A MAPK4 Missense_Mutation p.V175I 0.12 tolerated(0.08) probably_damaging(0.993) TCGA-R5-A7ZI-01 18 54385206 54385206 G A WDR7 Silent p.Q530Q 0.19 TCGA-R5-A7ZI-01 18 55020155 55020155 G A ST8SIA3 Silent p.S26S 0.14 TCGA-R5-A7ZI-01 18 55103278 55103278 G T ONECUT2 Missense_Mutation p.M110I 0.15 tolerated(0.07) benign(0.38) TCGA-R5-A7ZI-01 18 55221649 55221649 G A FECH Missense_Mutation p.P313L 0.16 deleterious(0) probably_damaging(0.997) TCGA-R5-A7ZI-01 18 61067829 61067829 A - VPS4B Frame_Shift_Del p.S198Qfs*12 0.20 TCGA-R5-A7ZI-01 18 61653541 61653541 A G SERPINB8 Intron 0.39 TCGA-R5-A7ZI-01 18 64239490 64239490 C T CDH19 5'UTR 0.16 TCGA-R5-A7ZI-01 18 67992756 67992756 C T SOCS6 Silent p.S284S 0.14 TCGA-R5-A7ZI-01 18 72343034 72343034 C A ZNF407 Missense_Mutation p.A20E 0.10 deleterious_low_confidence(0.01) benign(0.157) TCGA-R5-A7ZI-01 18 74637260 74637260 G T ZNF236 Missense_Mutation p.E1257D 0.17 tolerated(0.82) benign(0.019) TCGA-R5-A7ZI-01 18 8379166 8379166 C T PTPRM Missense_Mutation p.T1205M 0.22 deleterious(0) probably_damaging(0.999) TCGA-R5-A7ZI-01 19 1054032 1054032 C - ABCA7 Frame_Shift_Del p.T1167Kfs*6 0.15 TCGA-R5-A7ZI-01 19 10557061 10557061 G A PDE4A Missense_Mutation p.R163Q 0.06 deleterious(0.01) benign(0.172) TCGA-R5-A7ZI-01 19 11213382 11213382 G A LDLR Missense_Mutation p.R78H 0.13 tolerated(0.09) benign(0.159) TCGA-R5-A7ZI-01 19 11328011 11328011 C T DOCK6 Missense_Mutation p.E1203K 0.22 tolerated(0.05) benign(0.029) TCGA-R5-A7ZI-01 19 11472121 11472121 G A DKFZP761J1410 Missense_Mutation p.C182Y 0.21 deleterious(0) possibly_damaging(0.782) TCGA-R5-A7ZI-01 19 11686001 11686001 T G ACP5 Missense_Mutation p.K268Q 0.31 tolerated(0.53) benign(0) TCGA-R5-A7ZI-01 19 12491930 12491930 G A CTD-3105H18.14 3'UTR 0.27 TCGA-R5-A7ZI-01 19 12791075 12791075 C T DHPS Missense_Mutation p.R91H 0.13 tolerated(0.57) benign(0) TCGA-R5-A7ZI-01 19 12902862 12902862 C A JUNB Missense_Mutation p.P93T 0.19 deleterious(0.01) benign(0.199) TCGA-R5-A7ZI-01 19 1481800 1481800 G A PCSK4 Silent p.A742A 0.39 TCGA-R5-A7ZI-01 19 14829104 14829104 T G ZNF333 Missense_Mutation p.I322S 0.22 tolerated(0.51) benign(0.227) TCGA-R5-A7ZI-01 19 15536492 15536492 C T WIZ Missense_Mutation p.R390H 0.21 deleterious(0) probably_damaging(1) TCGA-R5-A7ZI-01 19 15558946 15558946 C T WIZ Missense_Mutation p.R58Q 0.17 tolerated_low_confidence(0.25) benign(0) TCGA-R5-A7ZI-01 19 16942353 16942353 G A SIN3B Silent p.E92E 0.15 TCGA-R5-A7ZI-01 19 17448933 17448933 C G GTPBP3 Missense_Mutation p.A57G 0.22 tolerated(0.05) possibly_damaging(0.447) TCGA-R5-A7ZI-01 19 18321782 18321782 C T PDE4C Missense_Mutation p.G699D 0.18 tolerated_low_confidence(0.25) benign(0.033) TCGA-R5-A7ZI-01 19 18376107 18376107 G A KIAA1683 Missense_Mutation p.P748L 0.18 tolerated(1) benign(0) TCGA-R5-A7ZI-01 19 18377588 18377588 G A KIAA1683 Silent p.D254D 0.19 TCGA-R5-A7ZI-01 19 18779692 18779692 C T KLHL26 Silent p.S495S 0.17 TCGA-R5-A7ZI-01 19 1913106 1913106 G A ADAT3 Missense_Mutation p.G354R 0.42 deleterious(0) probably_damaging(0.925) TCGA-R5-A7ZI-01 19 19446963 19446963 A G MAU2 Silent p.A109A 0.16 TCGA-R5-A7ZI-01 19 23405564 23405564 T A ZNF724P Missense_Mutation p.T495S 0.16 tolerated(0.24) probably_damaging(0.938) TCGA-R5-A7ZI-01 19 30314611 30314613 CTC - CCNE1 In_Frame_Del p.P388del 0.18 TCGA-R5-A7ZI-01 19 35801515 35801515 A G MAG Missense_Mutation p.I529V 0.19 tolerated(0.89) benign(0.002) TCGA-R5-A7ZI-01 19 36230925 36230925 T C IGFLR1 Missense_Mutation p.Q136R 0.24 tolerated(0.29) benign(0.004) TCGA-R5-A7ZI-01 19 36234928 36234928 C T U2AF1L4 Intron 0.21 TCGA-R5-A7ZI-01 19 36503974 36503974 G T ALKBH6 Nonsense_Mutation p.Y52* 0.20 TCGA-R5-A7ZI-01 19 3778367 3778367 G - MATK Frame_Shift_Del p.E448Rfs*11 0.14 TCGA-R5-A7ZI-01 19 3819222 3819222 C T ZFR2 Silent p.R584R 0.35 TCGA-R5-A7ZI-01 19 38799655 38799655 G A YIF1B Missense_Mutation p.R149C 0.36 deleterious(0) probably_damaging(0.99) TCGA-R5-A7ZI-01 19 38855584 38855584 C T CATSPERG Silent p.H843H 0.18 TCGA-R5-A7ZI-01 19 38860879 38860879 G - CATSPERG Frame_Shift_Del p.A1066Pfs*16 0.22 TCGA-R5-A7ZI-01 19 39078437 39078437 C T MAP4K1 3'UTR 0.17 TCGA-R5-A7ZI-01 19 40540576 40540576 G A ZNF780B Silent p.C730C 0.16 TCGA-R5-A7ZI-01 19 40711935 40711935 C T MAP3K10 Missense_Mutation p.R436W 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-R5-A7ZI-01 19 41386532 41386532 G A CYP2A7 Silent p.G115G 0.20 TCGA-R5-A7ZI-01 19 41711949 41711949 C T CYP2S1 Silent p.F417F 0.20 TCGA-R5-A7ZI-01 19 4217182 4217182 G A ANKRD24 Silent p.T675T 0.23 TCGA-R5-A7ZI-01 19 4249294 4249294 G A CCDC94 Missense_Mutation p.V32M 0.19 deleterious(0) probably_damaging(0.913) TCGA-R5-A7ZI-01 19 42791339 42791339 C - CIC Frame_Shift_Del p.P135Qfs*70 0.19 TCGA-R5-A7ZI-01 19 42830347 42830347 A G MEGF8 5'UTR 0.31 TCGA-R5-A7ZI-01 19 42856470 42856470 G A MEGF8 Missense_Mutation p.R1004H 0.33 tolerated(0.2) benign(0.002) TCGA-R5-A7ZI-01 19 44662390 44662390 T A ZNF234 3'UTR 0.20 TCGA-R5-A7ZI-01 19 46330877 46330877 C T SYMPK Missense_Mutation p.R691H 0.17 tolerated(0.28) benign(0.004) TCGA-R5-A7ZI-01 19 47503760 47503760 C T ARHGAP35 Missense_Mutation p.R1439W 0.19 deleterious(0.02) possibly_damaging(0.804) TCGA-R5-A7ZI-01 19 47593227 47593227 G A ZC3H4 Nonsense_Mutation p.R238* 0.15 TCGA-R5-A7ZI-01 19 49385324 49385324 G A TULP2 Missense_Mutation p.S471L 0.21 deleterious(0) probably_damaging(1) TCGA-R5-A7ZI-01 19 50399229 50399229 G A IL4I1 Missense_Mutation p.P54L 0.11 tolerated(0.05) benign(0.172) TCGA-R5-A7ZI-01 19 50464090 50464090 C T SIGLEC11 Missense_Mutation p.R60Q 0.20 tolerated(0.84) benign(0.019) TCGA-R5-A7ZI-01 19 51135931 51135931 G - SYT3 Frame_Shift_Del p.L96Cfs*5 0.25 TCGA-R5-A7ZI-01 19 5131299 5131299 C - KDM4B Frame_Shift_Del p.P511Lfs*8 0.17 TCGA-R5-A7ZI-01 19 5134051 5134051 G A KDM4B Silent p.T688T 0.17 TCGA-R5-A7ZI-01 19 51728631 51728631 C T CD33 Silent p.A65A 0.17 TCGA-R5-A7ZI-01 19 52519584 52519584 C T ZNF614 Missense_Mutation p.G423R 0.18 deleterious(0) probably_damaging(0.991) TCGA-R5-A7ZI-01 19 54848153 54848153 A C LILRA4 Missense_Mutation p.L405R 0.15 deleterious(0) probably_damaging(0.996) TCGA-R5-A7ZI-01 19 55451653 55451653 G T NLRP7 Silent p.G178G 0.16 TCGA-R5-A7ZI-01 19 55593234 55593234 C T EPS8L1 Missense_Mutation p.R290C 0.15 deleterious(0) probably_damaging(0.991) TCGA-R5-A7ZI-01 19 56114011 56114011 G A ZNF524 Missense_Mutation p.R178H 0.29 deleterious(0.01) probably_damaging(0.991) TCGA-R5-A7ZI-01 19 56171977 56171977 C T U2AF2 Missense_Mutation p.A109V 0.21 deleterious(0.03) possibly_damaging(0.854) TCGA-R5-A7ZI-01 19 56443571 56443571 A G NLRP13 Missense_Mutation p.L36S 0.21 deleterious(0) probably_damaging(0.999) TCGA-R5-A7ZI-01 19 56701609 56701609 C T ZSCAN5B Missense_Mutation p.V359M 0.18 tolerated(0.27) probably_damaging(0.999) TCGA-R5-A7ZI-01 19 57723778 57723778 A C ZNF264 Missense_Mutation p.H438P 0.24 deleterious(0) probably_damaging(0.999) TCGA-R5-A7ZI-01 19 577929 577929 C T BSG Missense_Mutation p.R75W 0.21 tolerated(0.11) benign(0.048) TCGA-R5-A7ZI-01 19 7625995 7625995 C T PNPLA6 Silent p.D1314D 0.25 TCGA-R5-A7ZI-01 19 808643 808643 G T PTBP1 Missense_Mutation p.E448D 0.18 tolerated(0.46) benign(0.008) TCGA-R5-A7ZI-01 19 8436169 8436169 G C ANGPTL4 Missense_Mutation p.D268H 0.13 deleterious(0.01) probably_damaging(0.964) TCGA-R5-A7ZI-01 1 103444425 103444425 A G COL11A1 Silent p.P900P 0.20 TCGA-R5-A7ZI-01 1 103548506 103548506 T - COL11A1 Frame_Shift_Del p.A44Hfs*2 0.18 TCGA-R5-A7ZI-01 1 109727749 109727749 C T KIAA1324 Silent p.N345N 0.20 TCGA-R5-A7ZI-01 1 114201838 114201838 G T MAGI3 Silent p.L922L 0.13 TCGA-R5-A7ZI-01 1 11896036 11896036 C T CLCN6 Silent p.S602S 0.23 TCGA-R5-A7ZI-01 1 149880800 149880800 G T SV2A Silent p.P441P 0.17 TCGA-R5-A7ZI-01 1 150316964 150316964 C T PRPF3 Silent p.V527V 0.16 TCGA-R5-A7ZI-01 1 150811990 150811990 T C ARNT Missense_Mutation p.H138R 0.08 deleterious(0) probably_damaging(0.999) TCGA-R5-A7ZI-01 1 150940637 150940637 C T CERS2 Missense_Mutation p.G111D 0.12 tolerated(0.53) benign(0.077) TCGA-R5-A7ZI-01 1 151131238 151131238 C T TNFAIP8L2 Missense_Mutation p.A22V 0.30 tolerated(0.08) probably_damaging(0.992) TCGA-R5-A7ZI-01 1 151665010 151665010 A G SNX27 Missense_Mutation p.S447G 0.26 tolerated(0.71) benign(0.022) TCGA-R5-A7ZI-01 1 152082921 152082921 T G TCHH Missense_Mutation p.Q924H 0.14 unknown(0) TCGA-R5-A7ZI-01 1 152324795 152324795 C T FLG2 Missense_Mutation p.G1823R 0.17 probably_damaging(0.995) TCGA-R5-A7ZI-01 1 153615727 153615727 G A CHTOP Missense_Mutation p.R143Q 0.21 tolerated(0.36) unknown(0) TCGA-R5-A7ZI-01 1 154233543 154233543 G A UBAP2L Silent p.P918P 0.17 TCGA-R5-A7ZI-01 1 155717584 155717584 G A GON4L 3'Flank 0.21 TCGA-R5-A7ZI-01 1 156214975 156214975 G A PAQR6 Silent p.F83F 0.16 TCGA-R5-A7ZI-01 1 156230288 156230288 C T SMG5 Missense_Mutation p.R746H 0.15 tolerated(0.05) benign(0.001) TCGA-R5-A7ZI-01 1 156281858 156281860 GGA - CCT3 In_Frame_Del p.L376del 0.12 TCGA-R5-A7ZI-01 1 156811896 156811896 C A INSRR Intron 0.23 TCGA-R5-A7ZI-01 1 15766864 15766864 C T CTRC Missense_Mutation p.R37W 0.29 deleterious(0) possibly_damaging(0.749) TCGA-R5-A7ZI-01 1 158368798 158368798 A G OR10T2 Silent p.G153G 0.16 TCGA-R5-A7ZI-01 1 158624466 158624466 G A SPTA1 Missense_Mutation p.R991C 0.18 deleterious(0.01) benign(0.284) TCGA-R5-A7ZI-01 1 159175936 159175936 G A DARC Missense_Mutation p.G238D 0.19 tolerated(0.16) benign(0.078) TCGA-R5-A7ZI-01 1 159904474 159904474 A G IGSF9 Missense_Mutation p.I271T 0.19 tolerated(0.06) benign(0.206) TCGA-R5-A7ZI-01 1 161092988 161092988 A G DEDD Missense_Mutation p.C153R 0.23 tolerated(0.41) benign(0.003) TCGA-R5-A7ZI-01 1 161161124 161161124 C T ADAMTS4 Missense_Mutation p.G773D 0.09 deleterious(0.01) probably_damaging(0.997) TCGA-R5-A7ZI-01 1 161166529 161166529 G A ADAMTS4 Missense_Mutation p.R259C 0.17 deleterious(0.01) benign(0.015) TCGA-R5-A7ZI-01 1 16460048 16460049 - G EPHA2 Frame_Shift_Ins p.N598Qfs*96 0.24 TCGA-R5-A7ZI-01 1 169076126 169076128 AGA - ATP1B1 In_Frame_Del p.K22del 0.44 TCGA-R5-A7ZI-01 1 174606565 174606565 C T RABGAP1L Missense_Mutation p.A588V 0.15 deleterious(0) probably_damaging(0.975) TCGA-R5-A7ZI-01 1 176992649 176992649 A G ASTN1 Silent p.P443P 0.14 TCGA-R5-A7ZI-01 1 179320502 179320502 G C SOAT1 Missense_Mutation p.V501L 0.16 deleterious(0.03) benign(0.032) TCGA-R5-A7ZI-01 1 197071525 197071526 - GA ASPM Frame_Shift_Ins p.K2286Sfs*7 0.13 TCGA-R5-A7ZI-01 1 197073647 197073647 T A ASPM Silent p.R1578R 0.18 TCGA-R5-A7ZI-01 1 200635068 200635068 G A DDX59 Silent p.F267F 0.14 TCGA-R5-A7ZI-01 1 200843108 200843108 C T GPR25 Nonsense_Mutation p.R315* 0.27 TCGA-R5-A7ZI-01 1 201017736 201017736 C T CACNA1S Missense_Mutation p.R1472H 0.24 deleterious(0) probably_damaging(0.999) TCGA-R5-A7ZI-01 1 201868894 201868894 G A LMOD1 Missense_Mutation p.T416M 0.15 probably_damaging(0.97) TCGA-R5-A7ZI-01 1 202698171 202698171 C T KDM5B Missense_Mutation p.R1543Q 0.22 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-R5-A7ZI-01 1 202705511 202705511 G A KDM5B Missense_Mutation p.R1032C 0.25 tolerated(0.19) benign(0.127) TCGA-R5-A7ZI-01 1 204228411 204228411 C - PLEKHA6 Frame_Shift_Del p.V328Yfs*172 0.19 TCGA-R5-A7ZI-01 1 204948556 204948556 C A NFASC Missense_Mutation p.P682H 0.17 deleterious(0) probably_damaging(0.998) TCGA-R5-A7ZI-01 1 209773452 209773452 A - CAMK1G Frame_Shift_Del p.K74Rfs*8 0.13 TCGA-R5-A7ZI-01 1 21226331 21226332 - T EIF4G3 Frame_Shift_Ins p.V570Sfs*12 0.12 TCGA-R5-A7ZI-01 1 214558036 214558036 C T PTPN14 Missense_Mutation p.V388M 0.07 tolerated(0.18) benign(0.008) TCGA-R5-A7ZI-01 1 215933091 215933091 T C USH2A Silent p.Q3714Q 0.24 TCGA-R5-A7ZI-01 1 220232322 220232322 T A BPNT1 Missense_Mutation p.D264V 0.21 deleterious(0) probably_damaging(1) TCGA-R5-A7ZI-01 1 226030177 226030177 T C EPHX1 Splice_Site p.X347_splice 0.16 TCGA-R5-A7ZI-01 1 227920189 227920189 G A JMJD4 Silent p.P432P 0.23 TCGA-R5-A7ZI-01 1 230798932 230798932 C T COG2 Nonsense_Mutation p.R116* 0.21 TCGA-R5-A7ZI-01 1 23419328 23419328 C T LUZP1 Missense_Mutation p.R476H 0.16 deleterious(0) probably_damaging(1) TCGA-R5-A7ZI-01 1 23419981 23419981 C A LUZP1 Missense_Mutation p.K258N 0.21 deleterious(0.02) probably_damaging(0.998) TCGA-R5-A7ZI-01 1 237054561 237054561 C A MTR Missense_Mutation p.L1046M 0.20 deleterious(0) possibly_damaging(0.488) TCGA-R5-A7ZI-01 1 244218294 244218294 C T ZBTB18 Silent p.D406D 0.21 TCGA-R5-A7ZI-01 1 246755180 246755180 A - CNST Frame_Shift_Del p.I108Ffs*29 0.21 TCGA-R5-A7ZI-01 1 24710446 24710446 C T STPG1 Silent p.P79P 0.07 TCGA-R5-A7ZI-01 1 247171218 247171218 C T ZNF695 5'UTR 0.15 TCGA-R5-A7ZI-01 1 247464574 247464574 G A ZNF496 Silent p.G337G 0.05 TCGA-R5-A7ZI-01 1 247492873 247492873 G A ZNF496 Missense_Mutation p.T3I 0.15 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-R5-A7ZI-01 1 248845140 248845140 C T OR14I1 Missense_Mutation p.V156I 0.19 tolerated(0.16) benign(0.024) TCGA-R5-A7ZI-01 1 27105931 27105931 G - ARID1A Frame_Shift_Del p.D1850Tfs*33 0.21 TCGA-R5-A7ZI-01 1 28165314 28165314 T C PPP1R8 Silent p.L74L 0.15 TCGA-R5-A7ZI-01 1 32266187 32266187 C A SPOCD1 Missense_Mutation p.G486V 0.31 deleterious(0) probably_damaging(0.979) TCGA-R5-A7ZI-01 1 33252034 33252034 G A YARS Nonsense_Mutation p.R279* 0.22 TCGA-R5-A7ZI-01 1 33321535 33321535 C A S100PBP Missense_Mutation p.R375S 0.20 deleterious(0.03) probably_damaging(0.92) TCGA-R5-A7ZI-01 1 35478108 35478108 A G ZMYM6 Silent p.N290N 0.12 TCGA-R5-A7ZI-01 1 35578948 35578948 C A ZMYM1 Missense_Mutation p.T506N 0.11 tolerated(0.09) possibly_damaging(0.873) TCGA-R5-A7ZI-01 1 36887778 36887778 T C OSCP1 Silent p.S264S 0.23 TCGA-R5-A7ZI-01 1 3754080 3754080 G A CEP104 Nonsense_Mutation p.R299* 0.54 TCGA-R5-A7ZI-01 1 37947259 37947259 G A ZC3H12A Missense_Mutation p.R214Q 0.13 deleterious(0) probably_damaging(1) TCGA-R5-A7ZI-01 1 40125091 40125091 C T NT5C1A Missense_Mutation p.R270Q 0.15 deleterious(0.04) possibly_damaging(0.546) TCGA-R5-A7ZI-01 1 42657170 42657171 - T FOXJ3 Frame_Shift_Ins p.H385Qfs*65 0.11 TCGA-R5-A7ZI-01 1 42880264 42880264 C T RIMKLA Silent p.D265D 0.13 TCGA-R5-A7ZI-01 1 43805673 43805673 C A MPL Silent p.I243I 0.17 TCGA-R5-A7ZI-01 1 45553830 45553830 A - ZSWIM5 Frame_Shift_Del p.F225Lfs*9 0.12 TCGA-R5-A7ZI-01 1 54870573 54870573 C T SSBP3 Silent p.L29L 0.22 TCGA-R5-A7ZI-01 1 55224849 55224849 G A PARS2 5'UTR 0.44 TCGA-R5-A7ZI-01 1 5934601 5934601 C T NPHP4 Missense_Mutation p.R1054H 0.29 deleterious(0) probably_damaging(1) TCGA-R5-A7ZI-01 1 5947387 5947387 G A NPHP4 Missense_Mutation p.S815L 0.31 deleterious(0.01) benign(0.004) TCGA-R5-A7ZI-01 1 66831407 66831407 G A PDE4B Missense_Mutation p.V448I 0.21 deleterious(0.02) probably_damaging(0.997) TCGA-R5-A7ZI-01 1 67091541 67091541 C T SGIP1 Missense_Mutation p.R8C 0.26 deleterious(0) probably_damaging(0.988) TCGA-R5-A7ZI-01 1 67301451 67301451 G A WDR78 Missense_Mutation p.R531C 0.17 deleterious(0) probably_damaging(0.959) TCGA-R5-A7ZI-01 1 70505015 70505015 A G LRRC7 Missense_Mutation p.N1132D 0.17 tolerated(0.17) benign(0.007) TCGA-R5-A7ZI-01 1 77883395 77883395 G C AK5 Missense_Mutation p.D352H 0.14 tolerated(0.17) benign(0.176) TCGA-R5-A7ZI-01 1 85488133 85488133 T C MCOLN3 Intron 0.19 TCGA-R5-A7ZI-01 1 86048117 86048117 G A CYR61 Missense_Mutation p.R218H 0.28 tolerated(0.17) benign(0.001) TCGA-R5-A7ZI-01 1 86554890 86554890 T A COL24A1 Silent p.G558G 0.23 TCGA-R5-A7ZI-01 1 89270586 89270586 A T PKN2 Missense_Mutation p.I495F 0.08 deleterious(0) probably_damaging(0.91) TCGA-R5-A7ZI-01 1 89726358 89726358 A - GBP5 3'UTR 0.20 TCGA-R5-A7ZI-01 1 89850819 89850821 AAG - GBP6 In_Frame_Del p.K567del 0.25 TCGA-R5-A7ZI-01 1 899380 899380 C T KLHL17 Missense_Mutation p.A479V 0.19 deleterious(0.03) probably_damaging(0.989) TCGA-R5-A7ZI-01 1 91851162 91851162 A - HFM1 Frame_Shift_Del p.S242Qfs*12 0.18 TCGA-R5-A7ZI-01 1 92737111 92737113 TTC - GLMN In_Frame_Del p.E278del 0.14 TCGA-R5-A7ZI-01 1 9427589 9427589 G A SPSB1 Silent p.T259T 0.28 TCGA-R5-A7ZI-01 20 10653519 10653519 T C JAG1 Missense_Mutation p.T73A 0.17 deleterious(0) probably_damaging(0.998) TCGA-R5-A7ZI-01 20 13714427 13714427 G T ESF1 Missense_Mutation p.P631T 0.08 deleterious(0) probably_damaging(0.997) TCGA-R5-A7ZI-01 20 21687128 21687128 C - PAX1 Frame_Shift_Del p.L115Cfs*33 0.39 TCGA-R5-A7ZI-01 20 21690007 21690007 C - PAX1 Frame_Shift_Del p.A406Pfs*3 0.50 TCGA-R5-A7ZI-01 20 30659531 30659531 C T HCK Silent p.S43S 0.13 TCGA-R5-A7ZI-01 20 33879972 33879972 G A FAM83C Missense_Mutation p.R46W 0.14 deleterious(0) probably_damaging(1) TCGA-R5-A7ZI-01 20 34144140 34144140 G A ERGIC3 Intron 0.25 TCGA-R5-A7ZI-01 20 42695496 42695496 A G TOX2 Missense_Mutation p.S495G 0.16 tolerated_low_confidence(0.1) benign(0.058) TCGA-R5-A7ZI-01 20 44664461 44664461 C T SLC12A5 Nonsense_Mutation p.Q132* 0.06 TCGA-R5-A7ZI-01 20 46319007 46319007 G A SULF2 Silent p.S200S 0.47 TCGA-R5-A7ZI-01 20 47633820 47633820 C T ARFGEF2 Silent p.C1450C 0.20 TCGA-R5-A7ZI-01 20 52573974 52573974 G A BCAS1 Silent p.C471C 0.16 TCGA-R5-A7ZI-01 20 57766587 57766587 C A ZNF831 Silent p.P171P 0.18 TCGA-R5-A7ZI-01 20 61464391 61464391 G A COL9A3 Missense_Mutation p.G448D 0.17 deleterious(0) probably_damaging(1) TCGA-R5-A7ZI-01 20 61468581 61468581 G A COL9A3 Missense_Mutation p.G584S 0.12 deleterious(0) probably_damaging(1) TCGA-R5-A7ZI-01 21 10998214 10998214 G A TPTE RNA 0.06 TCGA-R5-A7ZI-01 21 30411466 30411466 G T USP16 Missense_Mutation p.Q284H 0.21 deleterious(0) probably_damaging(1) TCGA-R5-A7ZI-01 21 33331187 33331187 C T HUNK Missense_Mutation p.T260M 0.15 deleterious(0.03) probably_damaging(0.998) TCGA-R5-A7ZI-01 21 33684272 33684272 C - MRAP Frame_Shift_Del p.P163Lfs*18 0.18 TCGA-R5-A7ZI-01 21 46276121 46276121 G A PTTG1IP Missense_Mutation p.R146W 0.20 deleterious(0) probably_damaging(0.999) TCGA-R5-A7ZI-01 21 47848388 47848388 G A PCNT Missense_Mutation p.R2525H 0.20 possibly_damaging(0.84) TCGA-R5-A7ZI-01 22 19055632 19055632 C T DGCR2 Silent p.A103A 0.18 TCGA-R5-A7ZI-01 22 19418978 19418978 A G HIRA Missense_Mutation p.W8R 0.16 deleterious(0) possibly_damaging(0.821) TCGA-R5-A7ZI-01 22 19967757 19967757 T C ARVCF Missense_Mutation p.E302G 0.15 deleterious(0) probably_damaging(0.993) TCGA-R5-A7ZI-01 22 22677252 22677252 G T IGLV1-51 Missense_Mutation p.G94C 0.13 deleterious(0) probably_damaging(0.942) TCGA-R5-A7ZI-01 22 29538079 29538079 C T KREMEN1 Silent p.R469R 0.19 TCGA-R5-A7ZI-01 22 30951242 30951242 G A GAL3ST1 Missense_Mutation p.R324W 0.18 deleterious(0.03) benign(0.052) TCGA-R5-A7ZI-01 22 32011118 32011118 G A SFI1 Silent p.P1051P 0.28 TCGA-R5-A7ZI-01 22 32810247 32810247 A G BPIFC 3'UTR 0.16 TCGA-R5-A7ZI-01 22 38481279 38481279 A G BAIAP2L2 3'UTR 0.19 TCGA-R5-A7ZI-01 22 41265087 41265087 G A XPNPEP3 Missense_Mutation p.S50N 0.23 deleterious(0.03) possibly_damaging(0.84) TCGA-R5-A7ZI-01 22 42525172 42525172 C T CYP2D6 Missense_Mutation p.R123H 0.12 tolerated(0.2) benign(0.013) TCGA-R5-A7ZI-01 22 42611137 42611137 G A TCF20 Nonsense_Mutation p.R59* 0.23 TCGA-R5-A7ZI-01 22 45312409 45312409 G A PHF21B Silent p.S105S 0.13 TCGA-R5-A7ZI-01 22 45593827 45593827 C T KIAA0930 Missense_Mutation p.D345N 0.20 deleterious(0.02) possibly_damaging(0.651) TCGA-R5-A7ZI-01 22 50279758 50279758 G A ZBED4 Silent p.T816T 0.16 TCGA-R5-A7ZI-01 22 50599138 50599138 T C MOV10L1 Missense_Mutation p.F1116L 0.21 tolerated(0.43) benign(0.034) TCGA-R5-A7ZI-01 22 50615444 50615444 G A PANX2 Silent p.T101T 0.26 TCGA-R5-A7ZI-01 22 50656518 50656518 C T TUBGCP6 Missense_Mutation p.V1733I 0.16 deleterious(0) possibly_damaging(0.876) TCGA-R5-A7ZI-01 22 50987901 50987901 G A KLHDC7B Missense_Mutation p.A436T 0.22 tolerated(0.2) possibly_damaging(0.533) TCGA-R5-A7ZI-01 2 100210400 100210400 C A AFF3 Missense_Mutation p.A600S 0.40 tolerated(0.64) benign(0.082) TCGA-R5-A7ZI-01 2 10104056 10104056 G A GRHL1 Missense_Mutation p.R263Q 0.14 tolerated(0.06) probably_damaging(0.999) TCGA-R5-A7ZI-01 2 105859057 105859057 C T GPR45 Missense_Mutation p.R248C 0.17 tolerated(0.18) possibly_damaging(0.717) TCGA-R5-A7ZI-01 2 110922179 110922179 G T NPHP1 Missense_Mutation p.T286N 0.20 tolerated(0.5) benign(0) TCGA-R5-A7ZI-01 2 113308477 113308477 C T POLR1B Silent p.S220S 0.19 TCGA-R5-A7ZI-01 2 113414724 113414724 G A SLC20A1 Silent p.L228L 0.21 TCGA-R5-A7ZI-01 2 113820106 113820106 T A IL36RN Missense_Mutation p.L107H 0.11 tolerated(0.54) possibly_damaging(0.605) TCGA-R5-A7ZI-01 2 121747346 121747346 A G GLI2 Missense_Mutation p.T1286A 0.14 tolerated_low_confidence(0.08) benign(0) TCGA-R5-A7ZI-01 2 122363491 122363491 T A CLASP1 5'UTR 0.22 TCGA-R5-A7ZI-01 2 125192085 125192085 G A CNTNAP5 Missense_Mutation p.G185D 0.15 deleterious(0) possibly_damaging(0.852) TCGA-R5-A7ZI-01 2 128712715 128712715 G A SAP130 Missense_Mutation p.A782V 0.21 deleterious_low_confidence(0) unknown(0) TCGA-R5-A7ZI-01 2 130832862 130832863 - G POTEF Frame_Shift_Ins p.R728Pfs*54 0.14 TCGA-R5-A7ZI-01 2 130955953 130955953 G A TUBA3E 5'UTR 0.15 TCGA-R5-A7ZI-01 2 155295134 155295134 C T GALNT13 Nonsense_Mutation p.R476* 0.18 TCGA-R5-A7ZI-01 2 157183254 157183254 A G NR4A2 Missense_Mutation p.L446P 0.17 deleterious(0.01) benign(0.324) TCGA-R5-A7ZI-01 2 159663618 159663618 A G DAPL1 Silent p.A66A 0.07 TCGA-R5-A7ZI-01 2 162696407 162696407 G C SLC4A10 Missense_Mutation p.G129A 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-R5-A7ZI-01 2 16746920 16746920 G T FAM49A Silent p.I62I 0.15 TCGA-R5-A7ZI-01 2 172410006 172410006 T C CYBRD1 Missense_Mutation p.S185P 0.20 tolerated(0.1) benign(0.008) TCGA-R5-A7ZI-01 2 176802238 176802238 A - KIAA1715 Frame_Shift_Del p.R297Dfs*8 0.15 TCGA-R5-A7ZI-01 2 179419187 179419187 G A TTN Silent p.N29629N 0.18 TCGA-R5-A7ZI-01 2 179586826 179586826 C T TTN Missense_Mutation p.V7522I 0.18 TCGA-R5-A7ZI-01 2 1842995 1842995 C T MYT1L Silent p.T1000T 0.07 TCGA-R5-A7ZI-01 2 189873769 189873769 T - COL3A1 Frame_Shift_Del p.F1216Lfs*20 0.13 TCGA-R5-A7ZI-01 2 191941020 191941020 G A STAT4 Missense_Mutation p.A102V 0.16 deleterious(0) probably_damaging(0.997) TCGA-R5-A7ZI-01 2 196689020 196689020 T C DNAH7 Missense_Mutation p.K3084E 0.24 deleterious(0) probably_damaging(0.992) TCGA-R5-A7ZI-01 2 197631288 197631288 C T GTF3C3 Splice_Site p.X846_splice 0.09 TCGA-R5-A7ZI-01 2 206628602 206628602 A G NRP2 Missense_Mutation p.Q750R 0.22 deleterious(0) probably_damaging(0.996) TCGA-R5-A7ZI-01 2 207619790 207619790 C A MDH1B Missense_Mutation p.G285W 0.28 tolerated(0.19) possibly_damaging(0.662) TCGA-R5-A7ZI-01 2 209025561 209025561 G A CRYGA Silent p.V164V 0.21 TCGA-R5-A7ZI-01 2 215610468 215610468 T - BARD1 Frame_Shift_Del p.K596Nfs*9 0.18 TCGA-R5-A7ZI-01 2 219878677 219878677 C T CCDC108 Missense_Mutation p.R1231H 0.19 deleterious(0) possibly_damaging(0.761) TCGA-R5-A7ZI-01 2 220081103 220081103 C - ABCB6 Frame_Shift_Del p.G318Vfs*9 0.18 TCGA-R5-A7ZI-01 2 220103038 220103038 A - GLB1L Frame_Shift_Del p.F425Lfs*19 0.16 TCGA-R5-A7ZI-01 2 223783810 223783810 G A ACSL3 Missense_Mutation p.R232Q 0.17 tolerated(0.42) benign(0.053) TCGA-R5-A7ZI-01 2 227661024 227661024 T C IRS1 Missense_Mutation p.T811A 0.12 tolerated(0.37) benign(0.002) TCGA-R5-A7ZI-01 2 230678584 230678584 A T TRIP12 Splice_Site p.X614_splice 0.15 TCGA-R5-A7ZI-01 2 230861641 230861641 T C FBXO36 Splice_Site p.X126_splice 0.17 TCGA-R5-A7ZI-01 2 231155281 231155281 T C SP140 Splice_Site p.X609_splice 0.19 TCGA-R5-A7ZI-01 2 235951260 235951260 C T SH3BP4 Missense_Mutation p.A616V 0.10 tolerated(0.18) benign(0.008) TCGA-R5-A7ZI-01 2 238280362 238280362 G A COL6A3 Intron 0.16 TCGA-R5-A7ZI-01 2 238494757 238494757 G A RAB17 Missense_Mutation p.P14L 0.23 tolerated(0.2) benign(0.004) TCGA-R5-A7ZI-01 2 239141128 239141128 C T AC016757.3 5'Flank 0.13 TCGA-R5-A7ZI-01 2 241659197 241659197 C T KIF1A Missense_Mutation p.R1672Q 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-R5-A7ZI-01 2 242002244 242002244 G T SNED1 Missense_Mutation p.G765V 0.21 deleterious(0) benign(0.182) TCGA-R5-A7ZI-01 2 242375937 242375937 C T FARP2 Missense_Mutation p.A381V 0.12 tolerated(0.44) benign(0.005) TCGA-R5-A7ZI-01 2 24521656 24521656 G A ITSN2 Missense_Mutation p.R458C 0.12 deleterious(0) unknown(0) TCGA-R5-A7ZI-01 2 26663252 26663252 G A DRC1 Missense_Mutation p.E299K 0.09 deleterious(0) probably_damaging(0.985) TCGA-R5-A7ZI-01 2 27552356 27552356 T C GTF3C2 Silent p.S589S 0.20 TCGA-R5-A7ZI-01 2 27672926 27672926 C T IFT172 Missense_Mutation p.R1330H 0.15 deleterious(0.05) possibly_damaging(0.541) TCGA-R5-A7ZI-01 2 32664633 32664633 G T BIRC6 Missense_Mutation p.R1230I 0.23 benign(0.1) TCGA-R5-A7ZI-01 2 36668550 36668550 C T CRIM1 Missense_Mutation p.R219C 0.20 deleterious(0.01) probably_damaging(0.988) TCGA-R5-A7ZI-01 2 37586938 37586938 C T QPCT Silent p.A161A 0.13 TCGA-R5-A7ZI-01 2 39964118 39964118 G A THUMPD2 Silent p.N423N 0.14 TCGA-R5-A7ZI-01 2 48032113 48032113 C T MSH6 Missense_Mutation p.T1168I 0.22 deleterious(0.04) probably_damaging(0.999) TCGA-R5-A7ZI-01 2 48037533 48037533 C T FBXO11 Missense_Mutation p.A754T 0.20 tolerated(0.19) benign(0.152) TCGA-R5-A7ZI-01 2 54036348 54036348 T A ERLEC1 Intron 0.18 TCGA-R5-A7ZI-01 2 54874381 54874381 C T SPTBN1 Silent p.A1660A 0.18 TCGA-R5-A7ZI-01 2 69046397 69046397 C T ARHGAP25 Silent p.G382G 0.13 TCGA-R5-A7ZI-01 2 69379378 69379378 G A ANTXR1 Nonsense_Mutation p.W343* 0.15 TCGA-R5-A7ZI-01 2 70933424 70933424 C T ADD2 Silent p.A39A 0.11 TCGA-R5-A7ZI-01 2 7164527 7164527 C T RNF144A Silent p.D179D 0.11 TCGA-R5-A7ZI-01 2 73228669 73228669 G T SFXN5 Silent p.S132S 0.16 TCGA-R5-A7ZI-01 2 80529630 80529632 AGG - LRRTM1 In_Frame_Del p.S438del 0.10 TCGA-R5-A7ZI-01 2 86705842 86705842 A C KDM3A Missense_Mutation p.K767T 0.21 tolerated(0.5) probably_damaging(0.997) TCGA-R5-A7ZI-01 2 96919562 96919562 G - TMEM127 Frame_Shift_Del p.P234Lfs*73 0.20 TCGA-R5-A7ZI-01 2 97215159 97215159 G A ARID5A Silent p.T74T 0.17 TCGA-R5-A7ZI-01 2 99767057 99767057 A T C2ORF15 Silent p.V46V 0.15 TCGA-R5-A7ZI-01 2 99790399 99790399 A G MITD1 Missense_Mutation p.Y78H 0.12 tolerated(0.66) benign(0.004) TCGA-R5-A7ZI-01 3 101284044 101284044 A - TRMT10C Frame_Shift_Del p.V142* 0.14 TCGA-R5-A7ZI-01 3 10452321 10452321 C T ATP2B2 Silent p.P126P 0.17 TCGA-R5-A7ZI-01 3 108572494 108572494 G A TRAT1 Missense_Mutation p.A111T 0.12 deleterious(0) possibly_damaging(0.906) TCGA-R5-A7ZI-01 3 112998771 112998771 C T BOC Silent p.R707R 0.19 TCGA-R5-A7ZI-01 3 113667803 113667803 T C ZDHHC23 Missense_Mutation p.C52R 0.19 deleterious(0) probably_damaging(0.984) TCGA-R5-A7ZI-01 3 113673092 113673092 G A ZDHHC23 Missense_Mutation p.R236H 0.18 tolerated(0.1) benign(0.059) TCGA-R5-A7ZI-01 3 114058003 114058003 G - ZBTB20 Frame_Shift_Del p.P692Lfs*43 0.16 TCGA-R5-A7ZI-01 3 119462990 119462990 C T MAATS1 Missense_Mutation p.R617W 0.18 deleterious(0) probably_damaging(0.998) TCGA-R5-A7ZI-01 3 122880842 122880842 T C PDIA5 3'UTR 0.08 TCGA-R5-A7ZI-01 3 123419658 123419658 G A MYLK Missense_Mutation p.A886V 0.14 tolerated(0.29) benign(0.002) TCGA-R5-A7ZI-01 3 123634293 123634293 C T CCDC14 Missense_Mutation p.G691D 0.14 tolerated(0.06) benign(0.001) TCGA-R5-A7ZI-01 3 1262424 1262424 T A CNTN6 Missense_Mutation p.F37I 0.20 tolerated(0.07) benign(0.022) TCGA-R5-A7ZI-01 3 128126950 128126950 G A EEFSEC Missense_Mutation p.A547T 0.14 tolerated(0.41) benign(0.002) TCGA-R5-A7ZI-01 3 128181482 128181482 C T DNAJB8 Missense_Mutation p.G203R 0.18 deleterious(0.03) probably_damaging(0.999) TCGA-R5-A7ZI-01 3 128618207 128618207 A C ACAD9 Silent p.S237S 0.19 TCGA-R5-A7ZI-01 3 130290118 130290118 C G COL6A6 Missense_Mutation p.P953R 0.23 tolerated(0.74) benign(0.006) TCGA-R5-A7ZI-01 3 130380763 130380763 A G COL6A6 Missense_Mutation p.Y2038C 0.23 deleterious(0) probably_damaging(0.999) TCGA-R5-A7ZI-01 3 132229995 132229995 G A DNAJC13 Missense_Mutation p.A1734T 0.16 tolerated(0.59) benign(0) TCGA-R5-A7ZI-01 3 132244473 132244473 T C DNAJC13 Missense_Mutation p.L2027S 0.17 tolerated(0.21) benign(0.015) TCGA-R5-A7ZI-01 3 142177873 142177873 T C ATR Missense_Mutation p.H2477R 0.17 deleterious(0) probably_damaging(1) TCGA-R5-A7ZI-01 3 142567256 142567256 T C PCOLCE2 Missense_Mutation p.N84S 0.17 tolerated(0.56) benign(0.028) TCGA-R5-A7ZI-01 3 149192781 149192781 C T TM4SF4 Silent p.N39N 0.20 TCGA-R5-A7ZI-01 3 15303785 15303785 C T SH3BP5 Silent p.A169A 0.17 TCGA-R5-A7ZI-01 3 158363453 158363453 G A GFM1 Silent p.G39G 0.09 TCGA-R5-A7ZI-01 3 168802628 168802628 T C MECOM 3'UTR 0.28 TCGA-R5-A7ZI-01 3 169587562 169587562 C A LRRC31 Nonsense_Mutation p.G12* 0.14 TCGA-R5-A7ZI-01 3 172737357 172737357 A G SPATA16 Missense_Mutation p.V256A 0.26 tolerated(0.16) benign(0.006) TCGA-R5-A7ZI-01 3 179104374 179104374 A G MFN1 Missense_Mutation p.I657V 0.16 tolerated(0.18) benign(0.052) TCGA-R5-A7ZI-01 3 180327691 180327691 G - TTC14 Frame_Shift_Del p.K560Sfs*12 0.14 TCGA-R5-A7ZI-01 3 180666158 180666158 T A FXR1 Silent p.A98A 0.17 TCGA-R5-A7ZI-01 3 184052766 184052766 G - EIF4G1 3'UTR 0.27 TCGA-R5-A7ZI-01 3 184428950 184428950 C T MAGEF1 Silent p.Q220Q 0.28 TCGA-R5-A7ZI-01 3 187447049 187447049 C T BCL6 Missense_Mutation p.V382M 0.16 deleterious(0.03) benign(0.146) TCGA-R5-A7ZI-01 3 190366530 190366530 G A IL1RAP Intron 0.14 TCGA-R5-A7ZI-01 3 192516458 192516458 C T MB21D2 Missense_Mutation p.R398Q 0.17 tolerated(0.12) benign(0.301) TCGA-R5-A7ZI-01 3 3144367 3144368 - T IL5RA Frame_Shift_Ins p.E74Rfs*3 0.11 TCGA-R5-A7ZI-01 3 36778851 36778851 C T DCLK3 Missense_Mutation p.V434M 0.28 deleterious(0) probably_damaging(0.941) TCGA-R5-A7ZI-01 3 37045891 37045891 G A MLH1 Splice_Site p.X103_splice 0.20 TCGA-R5-A7ZI-01 3 39229903 39229903 T C XIRP1 Missense_Mutation p.Q345R 0.16 deleterious(0.04) possibly_damaging(0.517) TCGA-R5-A7ZI-01 3 47277999 47277999 C T KIF9 Missense_Mutation p.D679N 0.25 tolerated(0.17) benign(0.302) TCGA-R5-A7ZI-01 3 48456440 48456440 G T PLXNB1 Missense_Mutation p.P1326Q 0.20 tolerated(0.31) benign(0.196) TCGA-R5-A7ZI-01 3 48696487 48696487 C T CELSR3 Missense_Mutation p.R1194H 0.21 deleterious(0) probably_damaging(0.931) TCGA-R5-A7ZI-01 3 49052267 49052267 C - WDR6 Frame_Shift_Del p.S1003Pfs*2 0.19 TCGA-R5-A7ZI-01 3 49750068 49750068 C T RNF123 Missense_Mutation p.H885Y 0.24 tolerated(1) benign(0.124) TCGA-R5-A7ZI-01 3 50327646 50327646 G A IFRD2 Missense_Mutation p.R179C 0.19 deleterious(0.02) benign(0.159) TCGA-R5-A7ZI-01 3 51431458 51431460 AGA - RBM15B In_Frame_Del p.E879del 0.20 TCGA-R5-A7ZI-01 3 53883767 53883767 T C IL17RB Silent p.V57V 0.27 TCGA-R5-A7ZI-01 3 58486928 58486928 T C KCTD6 Missense_Mutation p.F95L 0.24 deleterious(0.01) probably_damaging(0.994) TCGA-R5-A7ZI-01 3 64004658 64004658 C A PSMD6 Missense_Mutation p.G185C 0.16 deleterious(0) probably_damaging(0.999) TCGA-R5-A7ZI-01 3 7620148 7620148 C T GRM7 Missense_Mutation p.P519S 0.10 deleterious(0) probably_damaging(0.999) TCGA-R5-A7ZI-01 3 8808962 8808962 C T OXTR Silent p.A304A 0.12 TCGA-R5-A7ZI-01 3 9000665 9000665 C T RAD18 Silent p.R24R 0.12 TCGA-R5-A7ZI-01 3 97599983 97599983 T A CRYBG3 Missense_Mutation p.L410I 0.10 deleterious(0) probably_damaging(0.911) TCGA-R5-A7ZI-01 3 97744482 97744482 G A GABRR3 RNA 0.24 TCGA-R5-A7ZI-01 3 9782461 9782461 A G BRPF1 Splice_Site p.X520_splice 0.17 TCGA-R5-A7ZI-01 3 98307668 98307668 C T CPOX Missense_Mutation p.C281Y 0.31 deleterious(0) probably_damaging(0.949) TCGA-R5-A7ZI-01 3 99569425 99569425 G A FILIP1L Silent p.N365N 0.18 TCGA-R5-A7ZI-01 4 104116383 104116383 T G CENPE Missense_Mutation p.D122A 0.14 possibly_damaging(0.524) TCGA-R5-A7ZI-01 4 11401183 11401183 C T HS3ST1 Silent p.P149P 0.25 TCGA-R5-A7ZI-01 4 118006514 118006514 G - TRAM1L1 Frame_Shift_Del p.V13Ffs*128 0.29 TCGA-R5-A7ZI-01 4 13543687 13543687 T C NKX3-2 Missense_Mutation p.Y311C 0.50 tolerated(0.05) probably_damaging(0.999) TCGA-R5-A7ZI-01 4 144826704 144826704 A G GYPE 5'UTR 0.14 TCGA-R5-A7ZI-01 4 15601329 15601329 G T CC2D2A Missense_Mutation p.R1558S 0.18 deleterious(0.01) possibly_damaging(0.62) TCGA-R5-A7ZI-01 4 158282699 158282699 A T GRIA2 Silent p.V767V 0.09 TCGA-R5-A7ZI-01 4 159048620 159048620 G A FAM198B Missense_Mutation p.A508V 0.36 tolerated(0.06) probably_damaging(0.954) TCGA-R5-A7ZI-01 4 167983655 167983655 G A SPOCK3 Missense_Mutation p.P78S 0.17 tolerated(0.19) benign(0.271) TCGA-R5-A7ZI-01 4 169317264 169317264 T - DDX60L Frame_Shift_Del p.N1168Tfs*25 0.32 TCGA-R5-A7ZI-01 4 171009608 171009608 T C AADAT Missense_Mutation p.K59E 0.11 tolerated(1) benign(0.001) TCGA-R5-A7ZI-01 4 17488824 17488824 G A QDPR Missense_Mutation p.P222L 0.33 deleterious(0.03) probably_damaging(0.983) TCGA-R5-A7ZI-01 4 175898675 175898675 C - ADAM29 Frame_Shift_Del p.P668Lfs*37 0.31 TCGA-R5-A7ZI-01 4 185329341 185329341 T - IRF2 Frame_Shift_Del p.N167Mfs*7 0.24 TCGA-R5-A7ZI-01 4 1920062 1920062 A G WHSC1 Silent p.A374A 0.08 TCGA-R5-A7ZI-01 4 1940189 1940189 C T WHSC1 Silent p.I562I 0.17 TCGA-R5-A7ZI-01 4 25156725 25156725 C T SEPSECS Missense_Mutation p.R199H 0.21 tolerated(0.09) benign(0.046) TCGA-R5-A7ZI-01 4 40753000 40753000 C A NSUN7 Missense_Mutation p.A97D 0.30 deleterious(0.03) possibly_damaging(0.757) TCGA-R5-A7ZI-01 4 44700615 44700615 A - GUF1 Frame_Shift_Del p.K645Sfs*2 0.30 TCGA-R5-A7ZI-01 4 55946178 55946178 A G KDR Missense_Mutation p.V1334A 0.35 tolerated(0.91) benign(0) TCGA-R5-A7ZI-01 4 79293925 79293925 C T FRAS1 Nonsense_Mutation p.Q975* 0.17 TCGA-R5-A7ZI-01 4 80329363 80329363 T C GK2 5'UTR 0.15 TCGA-R5-A7ZI-01 4 84191032 84191032 T C COQ2 Missense_Mutation p.D298G 0.12 deleterious(0) probably_damaging(0.999) TCGA-R5-A7ZI-01 4 84227446 84227446 T C HPSE Silent p.S372S 0.19 TCGA-R5-A7ZI-01 4 845720 845720 G A GAK Missense_Mutation p.T1109M 0.47 tolerated(0.06) possibly_damaging(0.535) TCGA-R5-A7ZI-01 4 85758175 85758175 A - WDFY3 Frame_Shift_Del p.F161Lfs*19 0.33 TCGA-R5-A7ZI-01 4 88053452 88053452 C T AFF1 Missense_Mutation p.A1068V 0.11 deleterious(0.03) unknown(0) TCGA-R5-A7ZI-01 4 95173909 95173910 - A SMARCAD1 Frame_Shift_Ins p.N347Kfs*4 0.24 TCGA-R5-A7ZI-01 5 118485653 118485653 T C DMXL1 Silent p.S1377S 0.10 TCGA-R5-A7ZI-01 5 122726963 122726963 C A CEP120 Missense_Mutation p.K293N 0.13 tolerated(0.1) benign(0.038) TCGA-R5-A7ZI-01 5 125939710 125939710 G A PHAX Missense_Mutation p.G182D 0.06 tolerated(1) benign(0.001) TCGA-R5-A7ZI-01 5 132270440 132270440 C A AFF4 Missense_Mutation p.S106I 0.16 tolerated(0.07) probably_damaging(0.929) TCGA-R5-A7ZI-01 5 137721747 137721749 AAG - KDM3B In_Frame_Del p.K275del 0.16 TCGA-R5-A7ZI-01 5 140167240 140167240 C T PCDHA1 Silent p.F455F 0.21 TCGA-R5-A7ZI-01 5 140222666 140222666 C T PCDHA8 Missense_Mutation p.A587V 0.52 tolerated_low_confidence(0.11) benign(0.016) TCGA-R5-A7ZI-01 5 140256763 140256763 C T PCDHA12 Missense_Mutation p.P569L 0.13 tolerated_low_confidence(0.84) benign(0.005) TCGA-R5-A7ZI-01 5 140257029 140257029 G A PCDHA12 Missense_Mutation p.A658T 0.17 tolerated_low_confidence(0.05) benign(0.219) TCGA-R5-A7ZI-01 5 140516697 140516697 C T PCDHB5 Silent p.L561L 0.18 TCGA-R5-A7ZI-01 5 140554264 140554264 C T PCDHB7 Silent p.G616G 0.09 TCGA-R5-A7ZI-01 5 140856979 140856979 C T PCDHGC3 Silent p.A432A 0.17 TCGA-R5-A7ZI-01 5 1432800 1432800 C T SLC6A3 Silent p.T144T 0.16 TCGA-R5-A7ZI-01 5 145849244 145849246 TAT - TCERG1 In_Frame_Del p.Y448del 0.17 TCGA-R5-A7ZI-01 5 145859464 145859465 TA - TCERG1 Frame_Shift_Del p.M604Efs*4 0.13 TCGA-R5-A7ZI-01 5 14713690 14713690 C T ANKH Missense_Mutation p.V410I 0.13 tolerated(0.07) benign(0.146) TCGA-R5-A7ZI-01 5 150411908 150411908 G A TNIP1 Nonsense_Mutation p.R606* 0.20 TCGA-R5-A7ZI-01 5 153765941 153765941 A G GALNT10 Missense_Mutation p.D336G 0.20 deleterious(0) probably_damaging(1) TCGA-R5-A7ZI-01 5 154396977 154396977 T C KIF4B Silent p.A1186A 0.15 TCGA-R5-A7ZI-01 5 156381463 156381463 G A TIMD4 Silent p.N121N 0.16 TCGA-R5-A7ZI-01 5 156592737 156592737 C T FAM71B Missense_Mutation p.R148H 0.15 deleterious(0) probably_damaging(0.955) TCGA-R5-A7ZI-01 5 158139300 158139300 C T EBF1 Missense_Mutation p.V471M 0.26 tolerated_low_confidence(0.14) benign(0.035) TCGA-R5-A7ZI-01 5 159520305 159520305 T - PWWP2A Frame_Shift_Del p.N451Mfs*26 0.12 TCGA-R5-A7ZI-01 5 167675195 167675195 C - TENM2 Frame_Shift_Del p.L2419* 0.17 TCGA-R5-A7ZI-01 5 168199819 168199819 T C SLIT3 Missense_Mutation p.S476G 0.20 tolerated(1) benign(0.002) TCGA-R5-A7ZI-01 5 169015404 169015404 A - SPDL1 5'UTR 0.47 TCGA-R5-A7ZI-01 5 169141189 169141189 T C DOCK2 Missense_Mutation p.V606A 0.26 deleterious(0) possibly_damaging(0.871) TCGA-R5-A7ZI-01 5 175793483 175793483 G A ARL10 Missense_Mutation p.R95H 0.26 tolerated(1) benign(0.13) TCGA-R5-A7ZI-01 5 177637217 177637217 G A HNRNPAB Missense_Mutation p.G291D 0.11 tolerated(0.18) unknown(0) TCGA-R5-A7ZI-01 5 32087445 32087445 G A PDZD2 Silent p.A1297A 0.24 TCGA-R5-A7ZI-01 5 32380247 32380247 C T ZFR Silent p.P891P 0.18 TCGA-R5-A7ZI-01 5 35955929 35955929 C T UGT3A1 Silent p.G371G 0.11 TCGA-R5-A7ZI-01 5 36608618 36608618 G T SLC1A3 Missense_Mutation p.K31N 0.13 tolerated(0.38) benign(0.005) TCGA-R5-A7ZI-01 5 38967454 38967454 T C RICTOR Missense_Mutation p.H379R 0.22 deleterious(0.01) benign(0.424) TCGA-R5-A7ZI-01 5 41058189 41058190 TT - MROH2B Frame_Shift_Del p.K244Rfs*3 0.20 TCGA-R5-A7ZI-01 5 5462462 5462462 C T KIAA0947 Silent p.A1005A 0.12 TCGA-R5-A7ZI-01 5 54635921 54635921 G A SKIV2L2 Missense_Mutation p.R200H 0.15 deleterious(0) probably_damaging(0.999) TCGA-R5-A7ZI-01 5 56212780 56212780 T C SETD9 3'UTR 0.19 TCGA-R5-A7ZI-01 5 56231565 56231565 A G MIER3 Silent p.C150C 0.15 TCGA-R5-A7ZI-01 5 64887705 64887705 C T TRIM23 Missense_Mutation p.R539H 0.14 tolerated(0.23) probably_damaging(0.999) TCGA-R5-A7ZI-01 5 65344558 65344558 G A ERBB2IP Missense_Mutation p.E618K 0.20 deleterious(0.01) possibly_damaging(0.524) TCGA-R5-A7ZI-01 5 6754888 6754888 A G PAPD7 Missense_Mutation p.M487V 0.12 tolerated_low_confidence(0.82) benign(0) TCGA-R5-A7ZI-01 5 67589609 67589610 - A PIK3R1 Frame_Shift_Ins p.S460Kfs*5 0.15 TCGA-R5-A7ZI-01 5 71524106 71524106 G A MRPS27 Silent p.G227G 0.20 TCGA-R5-A7ZI-01 5 71757158 71757158 G A ZNF366 Missense_Mutation p.R56W 0.21 deleterious_low_confidence(0) probably_damaging(0.92) TCGA-R5-A7ZI-01 5 79279513 79279513 C T MTX3 Silent p.S250S 0.17 TCGA-R5-A7ZI-01 5 80559388 80559388 G A CKMT2 Missense_Mutation p.A365T 0.21 deleterious(0) benign(0.167) TCGA-R5-A7ZI-01 5 86658464 86658467 AAGA - RASA1 Frame_Shift_Del p.K478Vfs*4 0.14 TCGA-R5-A7ZI-01 5 89990142 89990142 A G GPR98 Silent p.T2523T 0.17 TCGA-R5-A7ZI-01 5 96329605 96329605 A G LNPEP Missense_Mutation p.D446G 0.18 tolerated(0.14) benign(0.174) TCGA-R5-A7ZI-01 5 98206409 98206409 T - CHD1 Frame_Shift_Del p.E1321Kfs*22 0.18 TCGA-R5-A7ZI-01 5 98236519 98236519 T - CHD1 Frame_Shift_Del p.G286Efs*34 0.18 TCGA-R5-A7ZI-01 6 101109731 101109731 G A ASCC3 Missense_Mutation p.P885L 0.11 deleterious(0) probably_damaging(0.931) TCGA-R5-A7ZI-01 6 107475756 107475756 C T PDSS2 3'UTR 0.24 TCGA-R5-A7ZI-01 6 10775640 10775640 G T MAK Silent p.P506P 0.20 TCGA-R5-A7ZI-01 6 109814599 109814600 GA - AK9 Frame_Shift_Del p.L1903Qfs*7 0.12 TCGA-R5-A7ZI-01 6 110301235 110301235 C T GPR6 Missense_Mutation p.P307L 0.14 deleterious(0) probably_damaging(0.998) TCGA-R5-A7ZI-01 6 112496514 112496514 C T LAMA4 Splice_Site p.X453_splice 0.15 TCGA-R5-A7ZI-01 6 116441979 116441979 C T COL10A1 Missense_Mutation p.G434R 0.10 deleterious(0) unknown(0) TCGA-R5-A7ZI-01 6 126211127 126211127 G T NCOA7 Missense_Mutation p.D643Y 0.15 deleterious(0) probably_damaging(0.998) TCGA-R5-A7ZI-01 6 128294226 128294228 CGA - PTPRK In_Frame_Del p.V1409del 0.21 TCGA-R5-A7ZI-01 6 129381043 129381043 T C LAMA2 Splice_Site p.X132_splice 0.17 TCGA-R5-A7ZI-01 6 131199300 131199300 G A EPB41L2 Missense_Mutation p.R663C 0.17 deleterious(0) probably_damaging(0.995) TCGA-R5-A7ZI-01 6 131958460 131958464 AGACT - ENPP3 5'UTR 0.22 TCGA-R5-A7ZI-01 6 133072300 133072302 CTC - VNN2 In_Frame_Del p.R396del 0.21 TCGA-R5-A7ZI-01 6 135516946 135516946 A G MYB Missense_Mutation p.R337G 0.14 tolerated(0.54) probably_damaging(0.958) TCGA-R5-A7ZI-01 6 13641502 13641502 T G RANBP9 Missense_Mutation p.E421D 0.15 deleterious(0.04) benign(0.324) TCGA-R5-A7ZI-01 6 136597393 136597393 C T BCLAF1 Missense_Mutation p.A424T 0.09 tolerated(0.41) benign(0.07) TCGA-R5-A7ZI-01 6 139266650 139266650 A G REPS1 Silent p.S154S 0.17 TCGA-R5-A7ZI-01 6 151673447 151673447 A G AKAP12 Silent p.E1307E 0.21 TCGA-R5-A7ZI-01 6 152646335 152646335 G T SYNE1 Missense_Mutation p.L5181M 0.20 benign(0.265) TCGA-R5-A7ZI-01 6 152651426 152651426 T - SYNE1 Frame_Shift_Del p.E4799Rfs*6 0.10 TCGA-R5-A7ZI-01 6 152652350 152652350 G A SYNE1 Silent p.S4490S 0.15 TCGA-R5-A7ZI-01 6 152660414 152660414 T C SYNE1 Missense_Mutation p.K4105E 0.19 possibly_damaging(0.85) TCGA-R5-A7ZI-01 6 152668298 152668298 C A SYNE1 Missense_Mutation p.G3992C 0.23 benign(0.285) TCGA-R5-A7ZI-01 6 152674432 152674432 G A SYNE1 Missense_Mutation p.T3740I 0.21 benign(0.013) TCGA-R5-A7ZI-01 6 15410541 15410541 T C JARID2 Missense_Mutation p.S90P 0.19 tolerated(0.1) possibly_damaging(0.694) TCGA-R5-A7ZI-01 6 15487611 15487611 C T JARID2 Silent p.P248P 0.17 TCGA-R5-A7ZI-01 6 15513219 15513220 - A JARID2 Frame_Shift_Ins p.E1073Rfs*15 0.17 TCGA-R5-A7ZI-01 6 155141394 155141394 G A SCAF8 Nonsense_Mutation p.W573* 0.08 TCGA-R5-A7ZI-01 6 159028360 159028360 C T TMEM181 Silent p.L357L 0.08 TCGA-R5-A7ZI-01 6 160543236 160543236 G A SLC22A1 Missense_Mutation p.R90H 0.20 deleterious(0) possibly_damaging(0.87) TCGA-R5-A7ZI-01 6 166738051 166738051 G A SFT2D1 Silent p.C128C 0.23 TCGA-R5-A7ZI-01 6 167571126 167571126 G T GPR31 Missense_Mutation p.A65E 0.18 deleterious(0.02) benign(0.161) TCGA-R5-A7ZI-01 6 170105213 170105213 T - C6orf120 3'UTR 0.21 TCGA-R5-A7ZI-01 6 17292264 17292264 G T RBM24 Missense_Mutation p.A209S 0.20 tolerated(0.7) benign(0.055) TCGA-R5-A7ZI-01 6 26234918 26234918 T C HIST1H1D Missense_Mutation p.K82E 0.18 deleterious(0) probably_damaging(0.991) TCGA-R5-A7ZI-01 6 26376923 26376923 C T BTN3A2 3'UTR 0.11 TCGA-R5-A7ZI-01 6 29407796 29407796 A C OR10C1 Missense_Mutation p.S2R 0.10 tolerated(0.37) benign(0.006) TCGA-R5-A7ZI-01 6 29598330 29598330 A G GABBR1 Missense_Mutation p.V127A 0.14 tolerated_low_confidence(0.09) possibly_damaging(0.548) TCGA-R5-A7ZI-01 6 29911960 29911960 C A HLA-A Nonsense_Mutation p.C227* 0.16 TCGA-R5-A7ZI-01 6 30229062 30229062 C A HCG17 Intron 0.20 TCGA-R5-A7ZI-01 6 30610593 30610593 G A ATAT1 Missense_Mutation p.R246H 0.16 tolerated(0.12) probably_damaging(0.979) TCGA-R5-A7ZI-01 6 31846750 31846750 C - SLC44A4 Frame_Shift_Del p.G3Efs*44 0.20 TCGA-R5-A7ZI-01 6 32015695 32015695 G A TNXB 5'Flank 0.10 TCGA-R5-A7ZI-01 6 32087702 32087702 G A ATF6B Nonsense_Mutation p.R289* 0.19 TCGA-R5-A7ZI-01 6 32164111 32164111 T C NOTCH4 Missense_Mutation p.Q1763R 0.19 tolerated(0.05) benign(0.012) TCGA-R5-A7ZI-01 6 32713171 32713171 C T HLA-DQA2 Silent p.T106T 0.12 TCGA-R5-A7ZI-01 6 32800519 32800519 C T TAP2 Missense_Mutation p.R343H 0.21 deleterious(0) probably_damaging(0.994) TCGA-R5-A7ZI-01 6 33166204 33166204 C G RXRB Missense_Mutation p.G174A 0.19 deleterious(0.03) possibly_damaging(0.609) TCGA-R5-A7ZI-01 6 33383884 33383884 C T PHF1 3'UTR 0.14 TCGA-R5-A7ZI-01 6 34825995 34825995 G A UHRF1BP1 Missense_Mutation p.R621H 0.17 deleterious(0.02) possibly_damaging(0.812) TCGA-R5-A7ZI-01 6 4125508 4125508 G A ECI2 Silent p.F257F 0.19 TCGA-R5-A7ZI-01 6 42974296 42974296 G A PPP2R5D Silent p.T67T 0.15 TCGA-R5-A7ZI-01 6 44272926 44272926 G A AARS2 Missense_Mutation p.R482W 0.14 deleterious(0.01) possibly_damaging(0.636) TCGA-R5-A7ZI-01 6 51618062 51618062 C T PKHD1 Missense_Mutation p.V2963I 0.13 tolerated(0.38) benign(0.004) TCGA-R5-A7ZI-01 6 71298401 71298401 C T C6orf57 Nonsense_Mutation p.R101* 0.10 TCGA-R5-A7ZI-01 6 83865781 83865781 G A DOPEY1 Missense_Mutation p.S2188N 0.25 deleterious(0) possibly_damaging(0.833) TCGA-R5-A7ZI-01 6 97246625 97246625 G A GPR63 Missense_Mutation p.A328V 0.16 tolerated(0.6) benign(0.348) TCGA-R5-A7ZI-01 6 97578819 97578819 C T KLHL32 Silent p.L534L 0.18 TCGA-R5-A7ZI-01 6 99930439 99930439 G T USP45 Intron 0.40 TCGA-R5-A7ZI-01 7 100470274 100470274 G A TRIP6 Missense_Mutation p.G403S 0.18 tolerated(0.24) probably_damaging(0.98) TCGA-R5-A7ZI-01 7 100780786 100780786 C T SERPINE1 3'UTR 0.36 TCGA-R5-A7ZI-01 7 101944555 101944555 C T SH2B2 Missense_Mutation p.P284S 0.23 deleterious(0.01) possibly_damaging(0.757) TCGA-R5-A7ZI-01 7 102108766 102108766 C - LRWD1 Frame_Shift_Del p.Q289Rfs*35 0.23 TCGA-R5-A7ZI-01 7 107340599 107340600 - A SLC26A4 Frame_Shift_Ins p.C565Mfs*9 0.12 TCGA-R5-A7ZI-01 7 107546756 107546756 A - DLD Frame_Shift_Del p.V212Ffs*12 0.34 TCGA-R5-A7ZI-01 7 111927176 111927176 G T ZNF277 Intron 0.16 TCGA-R5-A7ZI-01 7 112115610 112115610 T - IFRD1 3'UTR 0.27 TCGA-R5-A7ZI-01 7 117067510 117067510 G A ASZ1 Missense_Mutation p.A2V 0.15 deleterious(0.01) possibly_damaging(0.521) TCGA-R5-A7ZI-01 7 121651418 121651418 C A PTPRZ1 Missense_Mutation p.P773H 0.13 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-R5-A7ZI-01 7 12692216 12692216 A C SCIN Missense_Mutation p.K675T 0.32 tolerated(0.08) probably_damaging(0.94) TCGA-R5-A7ZI-01 7 128480118 128480118 C T FLNC Nonsense_Mutation p.Q485* 0.30 TCGA-R5-A7ZI-01 7 129330354 129330354 G A NRF1 Missense_Mutation p.G192R 0.21 deleterious(0) probably_damaging(0.997) TCGA-R5-A7ZI-01 7 130138034 130138034 C T MEST Missense_Mutation p.R132W 0.11 tolerated(0.09) benign(0.005) TCGA-R5-A7ZI-01 7 131982954 131982954 C T PLXNA4 Missense_Mutation p.A467T 0.34 deleterious(0.02) benign(0.013) TCGA-R5-A7ZI-01 7 134853689 134853689 A G C7orf49 5'UTR 0.38 TCGA-R5-A7ZI-01 7 141443377 141443377 C T SSBP1 Silent p.H34H 0.14 TCGA-R5-A7ZI-01 7 141635626 141635626 C T CLEC5A Silent p.T111T 0.17 TCGA-R5-A7ZI-01 7 142168592 142168592 G C TRBV5-4 Missense_Mutation p.S44C 0.39 deleterious(0) possibly_damaging(0.451) TCGA-R5-A7ZI-01 7 143093509 143093509 C T EPHA1 Silent p.A622A 0.12 TCGA-R5-A7ZI-01 7 1479689 1479689 G A MICALL2 Missense_Mutation p.A613V 0.37 tolerated(0.22) benign(0.215) TCGA-R5-A7ZI-01 7 148768462 148768462 G A ZNF786 Silent p.L468L 0.10 TCGA-R5-A7ZI-01 7 149318636 149318636 C T ZNF767 RNA 0.23 TCGA-R5-A7ZI-01 7 149512329 149512329 C - SSPO RNA 0.17 TCGA-R5-A7ZI-01 7 150555016 150555016 C T AOC1 Silent p.H486H 0.18 TCGA-R5-A7ZI-01 7 150696369 150696369 G A NOS3 Missense_Mutation p.A350T 0.32 deleterious(0) probably_damaging(0.998) TCGA-R5-A7ZI-01 7 151046320 151046320 A - NUB1 Frame_Shift_Del p.D120Ifs*17 0.17 TCGA-R5-A7ZI-01 7 151851352 151851352 T - KMT2C Frame_Shift_Del p.S4047Vfs*36 0.25 TCGA-R5-A7ZI-01 7 154684291 154684291 G A DPP6 3'UTR 0.36 TCGA-R5-A7ZI-01 7 15725988 15725988 C T MEOX2 Missense_Mutation p.A14T 0.33 deleterious(0.04) benign(0.084) TCGA-R5-A7ZI-01 7 17378635 17378635 C T AHR Nonsense_Mutation p.R396* 0.33 TCGA-R5-A7ZI-01 7 19156596 19156596 C G TWIST1 Missense_Mutation p.E117Q 0.18 deleterious(0) probably_damaging(1) TCGA-R5-A7ZI-01 7 23293879 23293879 C T GPNMB Silent p.C105C 0.37 TCGA-R5-A7ZI-01 7 2404085 2404086 - G EIF3B Frame_Shift_Ins p.E363Rfs*18 0.28 TCGA-R5-A7ZI-01 7 2748733 2748733 G A AMZ1 Missense_Mutation p.R209Q 0.16 deleterious(0) possibly_damaging(0.576) TCGA-R5-A7ZI-01 7 32598654 32598654 T C AVL9 Missense_Mutation p.S265P 0.19 tolerated(0.18) benign(0.006) TCGA-R5-A7ZI-01 7 3658831 3658831 C T SDK1 Missense_Mutation p.R140C 0.11 tolerated(0.11) benign(0.035) TCGA-R5-A7ZI-01 7 42005120 42005120 G A GLI3 Missense_Mutation p.A1184V 0.27 tolerated(1) benign(0.001) TCGA-R5-A7ZI-01 7 42006001 42006001 G A GLI3 Silent p.S890S 0.25 TCGA-R5-A7ZI-01 7 43484795 43484795 C T HECW1 Missense_Mutation p.A675V 0.20 tolerated_low_confidence(0.12) benign(0.094) TCGA-R5-A7ZI-01 7 44874134 44874135 AG - H2AFV Frame_Shift_Del p.L118Dfs*40 0.19 TCGA-R5-A7ZI-01 7 56023014 56023014 C T MRPS17 3'UTR 0.33 TCGA-R5-A7ZI-01 7 5752372 5752372 C T RNF216 Silent p.A652A 0.28 TCGA-R5-A7ZI-01 7 64167970 64167970 C T ZNF107 Missense_Mutation p.H430Y 0.31 deleterious(0.01) probably_damaging(1) TCGA-R5-A7ZI-01 7 66415981 66415981 G A TMEM248 Silent p.T213T 0.31 TCGA-R5-A7ZI-01 7 72400635 72400635 C T POM121 Nonsense_Mutation p.R156* 0.08 TCGA-R5-A7ZI-01 7 72733043 72733043 C T TRIM50 Silent p.S168S 0.06 TCGA-R5-A7ZI-01 7 75609806 75609806 G A POR Silent p.A172A 0.14 TCGA-R5-A7ZI-01 7 82581699 82581699 A G PCLO Missense_Mutation p.L2857P 0.16 unknown(0) TCGA-R5-A7ZI-01 7 82785058 82785059 - T PCLO Frame_Shift_Ins p.S300Kfs*23 0.29 TCGA-R5-A7ZI-01 7 87759724 87759724 G A ADAM22 Missense_Mutation p.V259I 0.11 tolerated(0.06) benign(0.17) TCGA-R5-A7ZI-01 7 92978023 92978023 G T CCDC132 Missense_Mutation p.L736F 0.30 deleterious(0.01) possibly_damaging(0.906) TCGA-R5-A7ZI-01 7 94050367 94050368 - C COL1A2 Frame_Shift_Ins p.G784Wfs*41 0.17 TCGA-R5-A7ZI-01 7 98579530 98579530 G A TRRAP Missense_Mutation p.E2918K 0.17 probably_damaging(0.941) TCGA-R5-A7ZI-01 7 98609744 98609745 - A TRRAP Frame_Shift_Ins p.T3785Nfs*137 0.32 TCGA-R5-A7ZI-01 7 98951600 98951601 - T ARPC1A Frame_Shift_Ins p.G192Wfs*41 0.30 TCGA-R5-A7ZI-01 7 99247763 99247763 A G CYP3A5 Missense_Mutation p.M449T 0.16 deleterious(0.04) probably_damaging(0.942) TCGA-R5-A7ZI-01 7 99909548 99909548 G A SPDYE3 Silent p.S240S 0.35 TCGA-R5-A7ZI-01 8 100520072 100520072 G A VPS13B Missense_Mutation p.R1411H 0.15 tolerated(0.24) benign(0.171) TCGA-R5-A7ZI-01 8 101300216 101300216 T - RNF19A Frame_Shift_Del p.R63Efs*5 0.31 TCGA-R5-A7ZI-01 8 101719160 101719160 G A PABPC1 Missense_Mutation p.P468S 0.07 tolerated(0.1) benign(0.004) TCGA-R5-A7ZI-01 8 104433227 104433227 C T DCAF13 Missense_Mutation p.R251W 0.14 deleterious(0) probably_damaging(0.954) TCGA-R5-A7ZI-01 8 104898189 104898189 A G RIMS2 Silent p.L454L 0.20 TCGA-R5-A7ZI-01 8 106814234 106814234 C A ZFPM2 Missense_Mutation p.H642N 0.12 tolerated(0.6) benign(0.093) TCGA-R5-A7ZI-01 8 109226918 109226918 C A EIF3E Missense_Mutation p.A327S 0.12 tolerated(0.2) probably_damaging(0.959) TCGA-R5-A7ZI-01 8 113484862 113484862 C A CSMD3 Nonsense_Mutation p.G1785* 0.07 TCGA-R5-A7ZI-01 8 11831470 11831470 T G DEFB136 Missense_Mutation p.Q71H 0.16 tolerated(0.1) possibly_damaging(0.46) TCGA-R5-A7ZI-01 8 12040236 12040236 G A FAM86B1 3'UTR 0.09 TCGA-R5-A7ZI-01 8 124265717 124265717 T G ZHX1 Silent p.R824R 0.28 TCGA-R5-A7ZI-01 8 139838991 139838991 G A COL22A1 Silent p.Y293Y 0.13 TCGA-R5-A7ZI-01 8 143425616 143425616 C T TSNARE1 Silent p.L152L 0.27 TCGA-R5-A7ZI-01 8 143927872 143927872 T C GML Silent p.Y81Y 0.16 TCGA-R5-A7ZI-01 8 143994024 143994024 G A CYP11B2 Silent p.H440H 0.23 TCGA-R5-A7ZI-01 8 144413443 144413443 G A TOP1MT Silent p.F63F 0.15 TCGA-R5-A7ZI-01 8 144802967 144802967 C T MAPK15 Missense_Mutation p.R292W 0.42 deleterious(0) probably_damaging(1) TCGA-R5-A7ZI-01 8 144995199 144995199 C T PLEC Silent p.S3067S 0.16 TCGA-R5-A7ZI-01 8 144998302 144998302 G A PLEC Missense_Mutation p.A2069V 0.37 unknown(0) TCGA-R5-A7ZI-01 8 145541816 145541818 CTT - DGAT1 In_Frame_Del p.K231del 0.17 TCGA-R5-A7ZI-01 8 145755905 145755905 G A ARHGAP39 Silent p.D1082D 0.10 TCGA-R5-A7ZI-01 8 145948591 145948591 C T ZNF251 Missense_Mutation p.G152R 0.24 tolerated(0.53) benign(0) TCGA-R5-A7ZI-01 8 1497123 1497123 G A DLGAP2 Silent p.S88S 0.15 TCGA-R5-A7ZI-01 8 1497698 1497698 C T DLGAP2 Missense_Mutation p.T280M 0.10 tolerated(0.05) possibly_damaging(0.776) TCGA-R5-A7ZI-01 8 16921748 16921748 T C MICU3 Splice_Site p.X179_splice 0.15 TCGA-R5-A7ZI-01 8 18080131 18080131 T G NAT1 Missense_Mutation p.F254C 0.31 deleterious(0) probably_damaging(1) TCGA-R5-A7ZI-01 8 1828240 1828240 G T ARHGEF10 Missense_Mutation p.K290N 0.16 deleterious(0) probably_damaging(1) TCGA-R5-A7ZI-01 8 22212924 22212924 C A PIWIL2 Missense_Mutation p.P943H 0.12 deleterious(0) probably_damaging(1) TCGA-R5-A7ZI-01 8 22487493 22487493 T C BIN3 Missense_Mutation p.I108V 0.11 tolerated(0.55) benign(0.009) TCGA-R5-A7ZI-01 8 27324834 27324834 G A CHRNA2 Missense_Mutation p.R121C 0.10 deleterious(0.03) probably_damaging(0.963) TCGA-R5-A7ZI-01 8 28908612 28908612 C A HMBOX1 Silent p.I401I 0.13 TCGA-R5-A7ZI-01 8 37914620 37914620 G A EIF4EBP1 Missense_Mutation p.R56Q 0.12 deleterious(0) benign(0.221) TCGA-R5-A7ZI-01 8 38775526 38775526 C T PLEKHA2 Missense_Mutation p.R27W 0.19 deleterious(0) probably_damaging(1) TCGA-R5-A7ZI-01 8 40532368 40532368 G A ZMAT4 Silent p.D144D 0.31 TCGA-R5-A7ZI-01 8 41472560 41472560 C T AGPAT6 Missense_Mutation p.A349V 0.34 deleterious(0) benign(0.184) TCGA-R5-A7ZI-01 8 41519418 41519418 G A ANK1 Silent p.A1881A 0.17 TCGA-R5-A7ZI-01 8 41791349 41791349 G A KAT6A Silent p.D1463D 0.14 TCGA-R5-A7ZI-01 8 41801448 41801448 C T KAT6A Silent p.P682P 0.34 TCGA-R5-A7ZI-01 8 42958729 42958729 C - POMK Frame_Shift_Del p.R15Efs*11 0.24 TCGA-R5-A7ZI-01 8 52321352 52321352 G A PXDNL Silent p.C944C 0.13 TCGA-R5-A7ZI-01 8 53076582 53076582 G A ST18 Missense_Mutation p.S455F 0.11 tolerated(0.05) probably_damaging(0.973) TCGA-R5-A7ZI-01 8 53853035 53853035 C T NPBWR1 Silent p.L190L 0.30 TCGA-R5-A7ZI-01 8 59727935 59727935 G A TOX Nonsense_Mutation p.Q452* 0.22 TCGA-R5-A7ZI-01 8 65494179 65494179 C T BHLHE22 Nonsense_Mutation p.R278* 0.12 TCGA-R5-A7ZI-01 8 67488604 67488604 C - MYBL1 Frame_Shift_Del p.V370* 0.13 TCGA-R5-A7ZI-01 8 67755776 67755776 T C SGK3 Silent p.Y356Y 0.12 TCGA-R5-A7ZI-01 8 6793555 6793555 G A DEFA4 Missense_Mutation p.T94M 0.10 tolerated_low_confidence(0.07) benign(0.171) TCGA-R5-A7ZI-01 8 73479929 73479929 T - KCNB2 5'UTR 0.17 TCGA-R5-A7ZI-01 8 73848485 73848485 G A KCNB2 Missense_Mutation p.V299M 0.11 deleterious(0) probably_damaging(0.997) TCGA-R5-A7ZI-01 8 90801568 90801568 T - RIPK2 Frame_Shift_Del p.F382Lfs*2 0.11 TCGA-R5-A7ZI-01 8 9437751 9437751 G A TNKS Silent p.P252P 0.10 TCGA-R5-A7ZI-01 8 97258611 97258611 A - MTERFD1 Frame_Shift_Del p.L250Cfs*2 0.14 TCGA-R5-A7ZI-01 9 100076708 100076709 - T CCDC180 Frame_Shift_Ins p.L211Ffs*6 0.21 TCGA-R5-A7ZI-01 9 100353622 100353622 A - TMOD1 Frame_Shift_Del p.N309Tfs*24 0.19 TCGA-R5-A7ZI-01 9 101014133 101014133 G A TBC1D2 Missense_Mutation p.P149S 0.14 tolerated(0.48) benign(0.033) TCGA-R5-A7ZI-01 9 101073472 101073472 G A GABBR2 Missense_Mutation p.R637W 0.15 deleterious(0.01) probably_damaging(0.979) TCGA-R5-A7ZI-01 9 101552503 101552503 C T ANKS6 Missense_Mutation p.A249T 0.16 deleterious(0.01) probably_damaging(0.988) TCGA-R5-A7ZI-01 9 104324544 104324544 C T RNF20 Missense_Mutation p.P923L 0.12 deleterious(0) probably_damaging(0.99) TCGA-R5-A7ZI-01 9 107380334 107380334 A - OR13C9 Frame_Shift_Del p.L51Wfs*32 0.14 TCGA-R5-A7ZI-01 9 107624012 107624012 A - ABCA1 Frame_Shift_Del p.L164Pfs*10 0.09 TCGA-R5-A7ZI-01 9 108145517 108145517 C T SLC44A1 Silent p.V582V 0.17 TCGA-R5-A7ZI-01 9 112144026 112144026 G A PTPN3 Missense_Mutation p.T857I 0.23 deleterious(0) probably_damaging(0.997) TCGA-R5-A7ZI-01 9 112153774 112153774 T - PTPN3 Frame_Shift_Del p.N674Tfs*28 0.25 TCGA-R5-A7ZI-01 9 112899757 112899757 A G PALM2-AKAP2 Missense_Mutation p.K645E 0.18 tolerated(0.17) benign(0.389) TCGA-R5-A7ZI-01 9 116132188 116132188 G T BSPRY Missense_Mutation p.W325C 0.16 deleterious(0) probably_damaging(1) TCGA-R5-A7ZI-01 9 119976742 119976742 G A ASTN2 Missense_Mutation p.R304W 0.10 deleterious_low_confidence(0.03) unknown(0) TCGA-R5-A7ZI-01 9 121929812 121929812 G A BRINP1 Silent p.F612F 0.17 TCGA-R5-A7ZI-01 9 125316262 125316262 C A OR1N2 Missense_Mutation p.L272I 0.17 tolerated(1) benign(0.377) TCGA-R5-A7ZI-01 9 131152050 131152050 G T URM1 3'UTR 0.17 TCGA-R5-A7ZI-01 9 131353806 131353806 G A SPTAN1 Silent p.A1019A 0.17 TCGA-R5-A7ZI-01 9 131476912 131476913 - C PKN3 Frame_Shift_Ins p.Q520Pfs*19 0.16 TCGA-R5-A7ZI-01 9 131762062 131762062 G A NUP188 Missense_Mutation p.R1274Q 0.33 tolerated(0.62) benign(0.023) TCGA-R5-A7ZI-01 9 131870213 131870213 G A CRAT Silent p.I57I 0.24 TCGA-R5-A7ZI-01 9 132394984 132394984 T C NTMT1 Translation_Start_Site p.M1? 0.19 deleterious(0) benign(0.253) TCGA-R5-A7ZI-01 9 132636877 132636877 G A USP20 Missense_Mutation p.R588H 0.16 deleterious(0) probably_damaging(0.969) TCGA-R5-A7ZI-01 9 133738377 133738377 C T ABL1 Silent p.G278G 0.16 TCGA-R5-A7ZI-01 9 134049509 134049509 G A NUP214 Silent p.T987T 0.14 TCGA-R5-A7ZI-01 9 134049567 134049567 G A NUP214 Missense_Mutation p.E1007K 0.14 possibly_damaging(0.81) TCGA-R5-A7ZI-01 9 135941982 135941982 G - CEL Frame_Shift_Del p.D207Tfs*41 0.19 TCGA-R5-A7ZI-01 9 135974071 135974071 C T RALGDS Missense_Mutation p.R883Q 0.29 deleterious(0) unknown(0) TCGA-R5-A7ZI-01 9 136199592 136199592 C T SURF6 Missense_Mutation p.S133N 0.12 tolerated(0.5) possibly_damaging(0.546) TCGA-R5-A7ZI-01 9 136270004 136270004 G A C9orf96 Silent p.P608P 0.18 TCGA-R5-A7ZI-01 9 136521644 136521644 G - DBH Splice_Site p.X480_splice 0.12 TCGA-R5-A7ZI-01 9 137300855 137300855 T C RXRA Missense_Mutation p.L167P 0.12 deleterious(0) probably_damaging(1) TCGA-R5-A7ZI-01 9 137653812 137653812 C T COL5A1 Silent p.D659D 0.09 TCGA-R5-A7ZI-01 9 138831605 138831605 C T UBAC1 Missense_Mutation p.A293T 0.13 deleterious(0) probably_damaging(0.997) TCGA-R5-A7ZI-01 9 139110947 139110947 T - QSOX2 Frame_Shift_Del p.K295Nfs*56 0.16 TCGA-R5-A7ZI-01 9 139750716 139750716 G A MAMDC4 Intron 0.11 TCGA-R5-A7ZI-01 9 140110883 140110883 C T NDOR1 3'UTR 0.09 TCGA-R5-A7ZI-01 9 140330621 140330621 C T ENTPD8 Silent p.P298P 0.18 TCGA-R5-A7ZI-01 9 14120446 14120446 G A NFIB Missense_Mutation p.T413I 0.10 tolerated(0.14) benign(0.041) TCGA-R5-A7ZI-01 9 21861981 21861981 G A MTAP Missense_Mutation p.A274T 0.33 tolerated(0.08) benign(0.071) TCGA-R5-A7ZI-01 9 26926404 26926404 A - PLAA Frame_Shift_Del p.P241Qfs*7 0.15 TCGA-R5-A7ZI-01 9 35044023 35044023 C T C9orf131 Missense_Mutation p.A466V 0.21 tolerated(0.22) benign(0.168) TCGA-R5-A7ZI-01 9 35563352 35563352 C T FAM166B Missense_Mutation p.V33M 0.17 tolerated(1) benign(0.004) TCGA-R5-A7ZI-01 9 35707793 35707793 G A TLN1 Missense_Mutation p.R1523C 0.14 deleterious(0) probably_damaging(0.979) TCGA-R5-A7ZI-01 9 35738603 35738603 A G GBA2 Silent p.F658F 0.17 TCGA-R5-A7ZI-01 9 35793920 35793920 G T NPR2 Missense_Mutation p.E231D 0.09 tolerated(1) benign(0.006) TCGA-R5-A7ZI-01 9 37887974 37887974 C T SLC25A51 Missense_Mutation p.G192S 0.15 tolerated(0.31) benign(0.008) TCGA-R5-A7ZI-01 9 70914000 70914000 G A CBWD3 Missense_Mutation p.V358I 0.10 tolerated(0.27) benign(0.239) TCGA-R5-A7ZI-01 9 75404223 75404223 A G TMC1 Missense_Mutation p.E405G 0.22 deleterious(0) probably_damaging(0.979) TCGA-R5-A7ZI-01 9 78804577 78804578 CC T PCSK5 Frame_Shift_Del p.P848Qfs*15 0.14 TCGA-R5-A7ZI-01 9 90534246 90534246 A T SPATA31C1 RNA 0.12 TCGA-R5-A7ZI-01 9 96019262 96019262 G A WNK2 Silent p.P741P 0.15 TCGA-R5-A7ZI-01 9 96326578 96326578 C T FAM120A Missense_Mutation p.S1038L 0.27 deleterious_low_confidence(0.02) benign(0.001) TCGA-R5-A7ZI-01 9 96859943 96859943 C T PTPDC1 Silent p.S363S 0.21 TCGA-R5-A7ZI-01 9 99581156 99581156 C T ZNF782 Nonsense_Mutation p.W383* 0.26 TCGA-R5-A7ZI-01 X 100808036 100808036 C T ARMCX1 Silent p.D41D 0.29 TCGA-R5-A7ZI-01 X 10176511 10176511 C T CLCN4 Missense_Mutation p.R424W 0.27 deleterious(0.01) possibly_damaging(0.806) TCGA-R5-A7ZI-01 X 102564600 102564600 T - BEX2 Frame_Shift_Del p.K134Sfs*3 0.14 TCGA-R5-A7ZI-01 X 10535267 10535267 G A MID1 Silent p.D107D 0.11 TCGA-R5-A7ZI-01 X 106845446 106845446 C T FRMPD3 Missense_Mutation p.R1426C 0.32 deleterious(0) possibly_damaging(0.86) TCGA-R5-A7ZI-01 X 107224324 107224324 G A TEX13B Silent p.L309L 0.12 TCGA-R5-A7ZI-01 X 118723958 118723958 C T NKRF Missense_Mutation p.R492H 0.19 tolerated(0.06) benign(0.246) TCGA-R5-A7ZI-01 X 118724650 118724650 G A NKRF Silent p.C261C 0.17 TCGA-R5-A7ZI-01 X 123220560 123220560 A G STAG2 Missense_Mutation p.K1073E 0.11 tolerated(0.14) possibly_damaging(0.557) TCGA-R5-A7ZI-01 X 125299072 125299072 G A DCAF12L2 Missense_Mutation p.A279V 0.23 tolerated(0.09) possibly_damaging(0.796) TCGA-R5-A7ZI-01 X 127185007 127185007 T C ACTRT1 3'UTR 0.12 TCGA-R5-A7ZI-01 X 128724382 128724382 C T OCRL 3'UTR 0.36 TCGA-R5-A7ZI-01 X 129190011 129190011 C - BCORL1 Frame_Shift_Del p.P1681Qfs*20 0.29 TCGA-R5-A7ZI-01 X 129518617 129518617 C T GPR119 Missense_Mutation p.V269M 0.10 tolerated(0.09) benign(0.169) TCGA-R5-A7ZI-01 X 130215788 130215788 T C ARHGAP36 Missense_Mutation p.V50A 0.13 deleterious(0) benign(0.142) TCGA-R5-A7ZI-01 X 130678923 130678923 A - OR13H1 Frame_Shift_Del p.D295Mfs*6 0.08 TCGA-R5-A7ZI-01 X 133549153 133549153 C T PHF6 Intron 0.13 TCGA-R5-A7ZI-01 X 133906038 133906038 T C FAM122B 3'UTR 0.27 TCGA-R5-A7ZI-01 X 134156557 134156557 G A FAM127C 5'UTR 0.23 TCGA-R5-A7ZI-01 X 135047054 135047055 - T MMGT1 3'UTR 0.22 TCGA-R5-A7ZI-01 X 135485417 135485417 A G GPR112 Missense_Mutation p.M2864V 0.22 tolerated(1) benign(0.004) TCGA-R5-A7ZI-01 X 140994081 140994081 T G MAGEC1 Silent p.G297G 0.08 TCGA-R5-A7ZI-01 X 146318430 146318430 G A MIR508 3'Flank 0.28 TCGA-R5-A7ZI-01 X 150573564 150573564 T C VMA21 3'UTR 0.38 TCGA-R5-A7ZI-01 X 151806715 151806715 T G GABRQ Missense_Mutation p.L20R 0.11 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-R5-A7ZI-01 X 152813344 152813344 C T ATP2B3 Missense_Mutation p.A337V 0.10 tolerated(0.09) possibly_damaging(0.85) TCGA-R5-A7ZI-01 X 152813423 152813423 G A ATP2B3 Silent p.K363K 0.11 TCGA-R5-A7ZI-01 X 152988723 152988723 A C BCAP31 Missense_Mutation p.C60G 0.32 deleterious_low_confidence(0.01) benign(0.009) TCGA-R5-A7ZI-01 X 153051471 153051471 C - IDH3G Intron 0.16 TCGA-R5-A7ZI-01 X 153052940 153052940 G A IDH3G Missense_Mutation p.A218V 0.23 tolerated(0.15) benign(0.225) TCGA-R5-A7ZI-01 X 153295906 153295906 C T MECP2 Missense_Mutation p.R470H 0.14 tolerated(0.12) unknown(0) TCGA-R5-A7ZI-01 X 153583190 153583190 C T FLNA Intron 0.13 TCGA-R5-A7ZI-01 X 154113528 154113528 G A H2AFB1 Silent p.P68P 0.20 TCGA-R5-A7ZI-01 X 19701965 19701965 T A SH3KBP1 Missense_Mutation p.E234D 0.16 tolerated(0.61) benign(0.07) TCGA-R5-A7ZI-01 X 21675600 21675600 G C KLHL34 Missense_Mutation p.L103V 0.27 deleterious(0.03) probably_damaging(0.951) TCGA-R5-A7ZI-01 X 22095740 22095740 C T PHEX Missense_Mutation p.R195C 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-R5-A7ZI-01 X 23018206 23018206 C T DDX53 Missense_Mutation p.A11V 0.22 deleterious_low_confidence(0.01) benign(0.001) TCGA-R5-A7ZI-01 X 24006374 24006374 G A KLHL15 Silent p.F493F 0.32 TCGA-R5-A7ZI-01 X 26212381 26212381 C A MAGEB6 Missense_Mutation p.H140N 0.15 tolerated(0.28) benign(0) TCGA-R5-A7ZI-01 X 30326325 30326325 G A NR0B1 Missense_Mutation p.L386F 0.16 deleterious(0) probably_damaging(0.999) TCGA-R5-A7ZI-01 X 31496332 31496332 G A DMD Missense_Mutation p.T2943M 0.26 possibly_damaging(0.897) TCGA-R5-A7ZI-01 X 3241681 3241681 C T MXRA5 Missense_Mutation p.R682H 0.30 tolerated(0.21) benign(0.019) TCGA-R5-A7ZI-01 X 34648340 34648340 A C TMEM47 3'UTR 0.25 TCGA-R5-A7ZI-01 X 37028149 37028149 T A FAM47C Missense_Mutation p.S556T 0.24 tolerated(0.14) benign(0.294) TCGA-R5-A7ZI-01 X 37641362 37641362 G A CYBB Missense_Mutation p.V23I 0.28 tolerated(0.92) benign(0.002) TCGA-R5-A7ZI-01 X 38262995 38262995 T C OTC Splice_Site p.X221_splice 0.31 TCGA-R5-A7ZI-01 X 40569344 40569344 C T MED14 Missense_Mutation p.V354I 0.16 tolerated(1) benign(0.005) TCGA-R5-A7ZI-01 X 41333636 41333636 C T NYX Silent p.N310N 0.11 TCGA-R5-A7ZI-01 X 47058616 47058616 T C UBA1 Missense_Mutation p.L62S 0.12 deleterious(0) probably_damaging(0.947) TCGA-R5-A7ZI-01 X 48382274 48382274 A G EBP Missense_Mutation p.T39A 0.24 tolerated(0.69) benign(0.001) TCGA-R5-A7ZI-01 X 48457201 48457201 C - WDR13 Frame_Shift_Del p.P48Qfs*8 0.33 TCGA-R5-A7ZI-01 X 48687959 48687959 C T ERAS Silent p.P142P 0.33 TCGA-R5-A7ZI-01 X 49138496 49138496 T G PPP1R3F Silent p.P371P 0.10 TCGA-R5-A7ZI-01 X 70341449 70341449 G A MED12 Missense_Mutation p.R295H 0.13 probably_damaging(1) TCGA-R5-A7ZI-01 X 70357182 70357182 G A MED12 Silent p.R1899R 0.11 TCGA-R5-A7ZI-01 X 73042889 73042890 - T XIST RNA 0.12 TCGA-R5-A7ZI-01 X 73066021 73066021 A - XIST RNA 0.18 TCGA-R5-A7ZI-01 X 73066989 73066989 A - XIST RNA 0.15 TCGA-R5-A7ZI-01 X 77913434 77913434 G A ZCCHC5 Missense_Mutation p.P162S 0.28 tolerated(0.28) benign(0.021) TCGA-R5-A7ZI-01 X 79978218 79978218 C G BRWD3 Missense_Mutation p.L573F 0.32 deleterious(0) probably_damaging(0.969) TCGA-R5-A7ZI-01 X 83362701 83362702 - A RPS6KA6 Frame_Shift_Ins p.K348Qfs*9 0.15 TCGA-R5-A7ZI-01 X 83403063 83403063 T - RPS6KA6 Frame_Shift_Del p.A110Pfs*3 0.17 TCGA-R5-A7ZI-01 X 84363667 84363667 C T SATL1 Missense_Mutation p.G103D 0.21 tolerated(0.34) probably_damaging(0.969) TCGA-R5-A7ZI-01 X 91134143 91134143 C A PCDH11X Silent p.L968L 0.32 TCGA-R5-A7ZI-01 X 9656061 9656061 G A TBL1X Missense_Mutation p.G121D 0.10 tolerated(0.23) benign(0.081) TCGA-R5-A7ZI-01 X 99941156 99941156 G T SYTL4 Intron 0.19 TCGA-R5-A7ZR-01 10 106937891 106937891 G A SORCS3 Missense_Mutation p.G657R 0.59 deleterious(0) probably_damaging(0.99) TCGA-R5-A7ZR-01 10 124672299 124672299 T G FAM24A Silent p.A49A 0.20 TCGA-R5-A7ZR-01 10 27538399 27538399 C A RP11-85G18.6 Intron 0.05 TCGA-R5-A7ZR-01 10 33134536 33134536 C G C10ORF68 Missense_Mutation p.Q411E 0.32 tolerated(0.11) benign(0.009) TCGA-R5-A7ZR-01 11 111956156 111956156 T C TIMM8B Missense_Mutation p.K54E 0.49 deleterious(0.01) benign(0.311) TCGA-R5-A7ZR-01 11 123755963 123755963 A C TMEM225 Missense_Mutation p.L57R 0.05 tolerated(0.12) benign(0.024) TCGA-R5-A7ZR-01 11 376456 376456 G A B4GALNT4 Missense_Mutation p.D445N 0.46 deleterious(0.03) unknown(0) TCGA-R5-A7ZR-01 11 5153859 5153859 T G OR52A5 Missense_Mutation p.N5T 0.19 deleterious(0.01) probably_damaging(1) TCGA-R5-A7ZR-01 11 66460884 66460884 G A SPTBN2 Missense_Mutation p.R1543W 0.19 tolerated(0.08) probably_damaging(0.998) TCGA-R5-A7ZR-01 11 6647213 6647213 G T DCHS1 Missense_Mutation p.D2223E 0.35 deleterious(0) probably_damaging(0.976) TCGA-R5-A7ZR-01 11 86518708 86518708 T A PRSS23 Missense_Mutation p.L8H 0.51 tolerated(0.11) benign(0.224) TCGA-R5-A7ZR-01 12 111885301 111885301 C T SH2B3 Missense_Mutation p.R397W 0.35 deleterious(0) probably_damaging(1) TCGA-R5-A7ZR-01 12 120990361 120990361 C T RNF10 Silent p.I138I 0.47 TCGA-R5-A7ZR-01 12 20905256 20905256 C A SLCO1C1 Missense_Mutation p.T679N 0.30 tolerated(0.37) benign(0.234) TCGA-R5-A7ZR-01 12 21448672 21448672 A G SLCO1A2 Missense_Mutation p.M377T 0.46 deleterious(0) probably_damaging(0.988) TCGA-R5-A7ZR-01 12 26864160 26864160 C T ITPR2 Nonsense_Mutation p.W299* 0.41 TCGA-R5-A7ZR-01 12 55945712 55945712 G A OR6C4 Silent p.K234K 0.41 TCGA-R5-A7ZR-01 13 31722526 31722526 G C HSPH1 Nonsense_Mutation p.S410* 0.10 TCGA-R5-A7ZR-01 14 68123303 68123303 G A VTI1B Missense_Mutation p.R124W 0.35 tolerated(0.14) benign(0.002) TCGA-R5-A7ZR-01 14 72054560 72054560 C A SIPA1L1 5'UTR 0.28 TCGA-R5-A7ZR-01 15 23000142 23000142 G A CYFIP1 Missense_Mutation p.V1166I 0.35 tolerated(0.19) benign(0.003) TCGA-R5-A7ZR-01 15 89172603 89172603 G A AEN Silent p.R229R 0.06 TCGA-R5-A7ZR-01 16 30771693 30771693 C T C16orf93 Silent p.A127A 0.35 TCGA-R5-A7ZR-01 16 70422404 70422404 G A ST3GAL2 Silent p.S193S 0.13 TCGA-R5-A7ZR-01 16 71483580 71483580 G A ZNF23 Silent p.P116P 0.27 TCGA-R5-A7ZR-01 17 17088232 17088232 C T MPRIP 3'UTR 0.51 TCGA-R5-A7ZR-01 17 18088229 18088229 T A ALKBH5 Silent p.S224S 0.31 TCGA-R5-A7ZR-01 17 45234352 45234352 G T CDC27 Missense_Mutation p.Q257K 0.05 tolerated(0.91) benign(0.069) TCGA-R5-A7ZR-01 17 48433886 48433886 C T XYLT2 Silent p.P499P 0.30 TCGA-R5-A7ZR-01 18 54385288 54385288 C T WDR7 Missense_Mutation p.R558C 0.67 deleterious(0) probably_damaging(1) TCGA-R5-A7ZR-01 18 60639816 60639816 C T PHLPP1 Silent p.D1210D 0.38 TCGA-R5-A7ZR-01 18 76757283 76757283 G A SALL3 Silent p.T1288T 0.35 TCGA-R5-A7ZR-01 19 37854085 37854085 A G HKR1 Missense_Mutation p.H463R 0.60 deleterious(0.01) benign(0.441) TCGA-R5-A7ZR-01 19 45575385 45575385 G A ZNF296 Missense_Mutation p.A301V 0.10 tolerated(0.07) benign(0.033) TCGA-R5-A7ZR-01 19 7976138 7976138 G A MAP2K7 Missense_Mutation p.E287K 0.60 deleterious(0) possibly_damaging(0.795) TCGA-R5-A7ZR-01 19 9067374 9067374 G T MUC16 Missense_Mutation p.T6691K 0.65 unknown(0) TCGA-R5-A7ZR-01 1 111824194 111824194 G C CHIAP2 RNA 0.44 TCGA-R5-A7ZR-01 1 158669693 158669693 C T OR6K2 Silent p.S250S 0.33 TCGA-R5-A7ZR-01 1 159827562 159827562 C T VSIG8 Missense_Mutation p.E209K 0.20 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-R5-A7ZR-01 1 169349824 169349824 T C BLZF1 Silent p.R258R 0.19 TCGA-R5-A7ZR-01 1 171753018 171753018 A G METTL13 Missense_Mutation p.M98V 0.33 deleterious(0) possibly_damaging(0.617) TCGA-R5-A7ZR-01 1 220364485 220364485 C A RAB3GAP2 Missense_Mutation p.R471I 0.38 deleterious(0) probably_damaging(0.997) TCGA-R5-A7ZR-01 1 7724185 7724185 C T CAMTA1 Silent p.T526T 0.56 TCGA-R5-A7ZR-01 20 9560913 9560913 G A PAK7 Missense_Mutation p.S290L 0.30 tolerated_low_confidence(0.19) probably_damaging(0.978) TCGA-R5-A7ZR-01 21 19666654 19666654 G A TMPRSS15 Nonsense_Mutation p.R807* 0.20 TCGA-R5-A7ZR-01 21 28296629 28296629 G A ADAMTS5 Missense_Mutation p.R846C 0.21 deleterious(0) probably_damaging(0.991) TCGA-R5-A7ZR-01 21 31864221 31864221 C G KRTAP19-3 Missense_Mutation p.G19R 0.22 deleterious_low_confidence(0.02) unknown(0) TCGA-R5-A7ZR-01 21 33678898 33678898 G A MRAP Intron 0.25 TCGA-R5-A7ZR-01 2 109545680 109545680 G A EDAR Silent p.D110D 0.35 TCGA-R5-A7ZR-01 2 116447443 116447443 A C DPP10 Missense_Mutation p.E178D 0.41 deleterious(0.02) benign(0.002) TCGA-R5-A7ZR-01 2 179170872 179170872 G T OSBPL6 5'UTR 0.48 TCGA-R5-A7ZR-01 2 218678007 218678007 T C TNS1 Missense_Mutation p.R1525G 0.20 deleterious(0) probably_damaging(0.942) TCGA-R5-A7ZR-01 2 219259676 219259676 C T SLC11A1 Missense_Mutation p.A524V 0.25 tolerated(0.57) benign(0.037) TCGA-R5-A7ZR-01 2 220420907 220420907 G A OBSL1 Missense_Mutation p.R1482C 0.36 deleterious(0.02) probably_damaging(0.959) TCGA-R5-A7ZR-01 2 27354559 27354559 C A PREB Silent p.L380L 0.27 TCGA-R5-A7ZR-01 2 27892203 27892203 T C SLC4A1AP Silent p.L432L 0.33 TCGA-R5-A7ZR-01 2 3502739 3502739 C T ADI1 Missense_Mutation p.A179T 0.20 tolerated(0.09) benign(0.003) TCGA-R5-A7ZR-01 2 88425812 88425812 G A FABP1 Silent p.I41I 0.40 TCGA-R5-A7ZR-01 3 101404703 101404703 A G RPL24 Missense_Mutation p.W51R 0.16 deleterious(0.02) probably_damaging(0.963) TCGA-R5-A7ZR-01 3 179341908 179341908 C T NDUFB5 3'UTR 0.31 TCGA-R5-A7ZR-01 3 68782291 68782291 C T FAM19A4 3'UTR 0.34 TCGA-R5-A7ZR-01 3 9743662 9743662 G A MTMR14 3'UTR 0.36 TCGA-R5-A7ZR-01 4 88584286 88584286 C T DMP1 Silent p.D452D 0.72 TCGA-R5-A7ZR-01 5 115146882 115146882 C T CDO1 Missense_Mutation p.E127K 0.51 tolerated(0.72) probably_damaging(0.933) TCGA-R5-A7ZR-01 5 132560842 132560842 G A FSTL4 Missense_Mutation p.L438F 0.26 tolerated(0.07) possibly_damaging(0.88) TCGA-R5-A7ZR-01 5 141694310 141694310 C T SPRY4 Missense_Mutation p.D145N 0.24 tolerated(0.09) possibly_damaging(0.705) TCGA-R5-A7ZR-01 5 147449998 147449998 C T SPINK5 Missense_Mutation p.T65M 0.42 tolerated(0.52) benign(0.056) TCGA-R5-A7ZR-01 5 150901275 150901275 G T FAT2 Missense_Mutation p.L3627M 0.21 probably_damaging(0.933) TCGA-R5-A7ZR-01 5 167858327 167858327 G A WWC1 Missense_Mutation p.A720T 0.14 tolerated(0.54) benign(0.003) TCGA-R5-A7ZR-01 5 179751274 179751274 C T GFPT2 Silent p.K236K 0.39 TCGA-R5-A7ZR-01 5 56777334 56777334 G A ACTBL2 3'UTR 0.25 TCGA-R5-A7ZR-01 5 71492637 71492637 C T MAP1B Missense_Mutation p.T1152M 0.21 probably_damaging(0.951) TCGA-R5-A7ZR-01 6 152671759 152671759 T C SYNE1 Missense_Mutation p.I3909M 0.20 benign(0.012) TCGA-R5-A7ZR-01 6 26376941 26376942 TG - BTN3A2 3'UTR 0.14 TCGA-R5-A7ZR-01 6 27840030 27840030 C T HIST1H3I Missense_Mutation p.A22T 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.817) TCGA-R5-A7ZR-01 6 7211150 7211151 - A RREB1 Frame_Shift_Ins p.E181Rfs*9 0.27 TCGA-R5-A7ZR-01 7 151164206 151164206 C A RHEB Nonstop_Mutation p.*185Lext*6 0.32 TCGA-R5-A7ZR-01 7 151933016 151933016 G T KMT2C Silent p.G885G 0.09 TCGA-R5-A7ZR-01 7 154875950 154875950 G A HTR5A Missense_Mutation p.R276Q 0.40 deleterious(0.05) benign(0.393) TCGA-R5-A7ZR-01 7 75517750 75517750 C - RHBDD2 3'UTR 0.23 TCGA-R5-A7ZR-01 8 146033091 146033091 G A ZNF517 Missense_Mutation p.G264S 0.12 tolerated(0.81) benign(0.001) TCGA-R5-A7ZR-01 8 32599536 32599536 G T NRG1 Intron 0.19 TCGA-R5-A7ZR-01 8 37823627 37823627 C A ADRB3 Missense_Mutation p.V121L 0.33 deleterious(0) probably_damaging(0.998) TCGA-R5-A7ZR-01 8 49647837 49647837 C T EFCAB1 5'Flank 0.29 TCGA-R5-A7ZR-01 8 67988768 67988768 G A CSPP1 Missense_Mutation p.A87T 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-R5-A7ZR-01 9 107288743 107288743 T A OR13C4 Missense_Mutation p.I250L 0.31 tolerated(0.63) possibly_damaging(0.633) TCGA-R5-A7ZR-01 9 14307441 14307441 G A NFIB Nonsense_Mutation p.R37* 0.51 TCGA-R5-A7ZR-01 X 100104298 100104298 G A NOX1 Missense_Mutation p.L472F 0.36 deleterious(0) probably_damaging(1) TCGA-R5-A7ZR-01 X 120008963 120008963 C T CT47B1 Missense_Mutation p.G188S 0.33 tolerated(0.2) probably_damaging(0.994) TCGA-R5-A7ZR-01 X 135428768 135428768 C G GPR112 Missense_Mutation p.A968G 0.14 deleterious(0.01) benign(0.057) TCGA-R5-A7ZR-01 X 151124295 151124295 G T GABRE Missense_Mutation p.S274R 0.35 tolerated(0.1) probably_damaging(0.992) TCGA-R5-A7ZR-01 X 47835938 47835938 A T ZNF182 Nonsense_Mutation p.C516* 0.10 TCGA-R5-A7ZR-01 X 53627213 53627213 C G HUWE1 Missense_Mutation p.E1010Q 0.09 possibly_damaging(0.607) TCGA-R5-A804-01 10 71868928 71868929 AA - H2AFY2 Frame_Shift_Del p.K307Vfs*32 0.12 TCGA-R5-A804-01 10 72517774 72517774 C T ADAMTS14 Silent p.N1001N 0.09 TCGA-R5-A804-01 11 118243366 118243366 G A UBE4A Missense_Mutation p.A236T 0.09 tolerated(0.22) benign(0.004) TCGA-R5-A804-01 11 18195433 18195433 G A MRGPRX4 Silent p.P210P 0.22 TCGA-R5-A804-01 11 55761365 55761365 G T OR5F1 Missense_Mutation p.T246K 0.09 deleterious(0) probably_damaging(0.974) TCGA-R5-A804-01 11 58711100 58711100 A G GLYATL1 Missense_Mutation p.I37V 0.08 tolerated(0.16) benign(0.001) TCGA-R5-A804-01 11 82880538 82880538 G T PCF11 Missense_Mutation p.G1054V 0.09 deleterious(0) probably_damaging(0.971) TCGA-R5-A804-01 11 88924507 88924507 A C TYR Missense_Mutation p.E319D 0.16 tolerated(0.39) probably_damaging(0.999) TCGA-R5-A804-01 12 112926888 112926888 G T PTPN11 Missense_Mutation p.G503V 0.13 deleterious(0) probably_damaging(1) TCGA-R5-A804-01 12 3788223 3788223 C A EFCAB4B Missense_Mutation p.A128S 0.06 tolerated(0.32) benign(0.017) TCGA-R5-A804-01 12 49425038 49425038 G A KMT2D Nonsense_Mutation p.R4484* 0.18 TCGA-R5-A804-01 12 53091600 53091600 G T KRT77 Silent p.T208T 0.20 TCGA-R5-A804-01 12 57922320 57922320 G A MBD6 Missense_Mutation p.G933R 0.08 tolerated_low_confidence(0.08) benign(0.134) TCGA-R5-A804-01 12 6696982 6696982 C T CHD4 Missense_Mutation p.R1200Q 0.12 deleterious(0) benign(0.013) TCGA-R5-A804-01 12 94072587 94072587 C T CRADD Missense_Mutation p.R13C 0.08 deleterious(0) probably_damaging(1) TCGA-R5-A804-01 13 23912386 23912386 G A SACS Nonsense_Mutation p.R1877* 0.07 TCGA-R5-A804-01 14 102028298 102028298 G A DIO3 Silent p.A155A 0.14 TCGA-R5-A804-01 14 71568858 71568858 G A PCNX Missense_Mutation p.R1914Q 0.14 deleterious(0) probably_damaging(0.999) TCGA-R5-A804-01 14 76966254 76966254 A C ESRRB Missense_Mutation p.S449R 0.26 tolerated_low_confidence(0.39) benign(0.001) TCGA-R5-A804-01 14 79423633 79423633 A G NRXN3 Missense_Mutation p.E402G 0.19 deleterious(0.01) probably_damaging(0.983) TCGA-R5-A804-01 15 20170027 20170027 T C IGHV1OR15-9 Missense_Mutation p.K82R 0.11 tolerated(0.07) benign(0.081) TCGA-R5-A804-01 15 25315642 25315642 T C SNORD116-8 RNA 0.16 TCGA-R5-A804-01 15 45443390 45443390 G T DUOX1 Silent p.L986L 0.07 TCGA-R5-A804-01 16 1398101 1398101 G A BAIAP3 Missense_Mutation p.V1087M 0.15 deleterious(0) probably_damaging(0.998) TCGA-R5-A804-01 16 29825190 29825190 C A PRRT2 Missense_Mutation p.A272D 0.15 deleterious(0) probably_damaging(0.996) TCGA-R5-A804-01 16 68846050 68846050 T G CDH1 Missense_Mutation p.Y341D 0.31 deleterious(0) probably_damaging(0.998) TCGA-R5-A804-01 17 10440988 10440988 G A MYH2 Silent p.I527I 0.15 TCGA-R5-A804-01 17 28512027 28512027 C T NSRP1 Missense_Mutation p.R338W 0.17 tolerated(0.09) benign(0.006) TCGA-R5-A804-01 17 41738558 41738558 T A MEOX1 Missense_Mutation p.E115D 0.13 tolerated(0.32) benign(0.016) TCGA-R5-A804-01 17 45750505 45750505 C T KPNB1 Nonsense_Mutation p.R557* 0.18 TCGA-R5-A804-01 17 5040981 5040981 G A USP6 Silent p.V287V 0.13 TCGA-R5-A804-01 17 58147200 58147200 A T HEATR6 Missense_Mutation p.F271I 0.07 deleterious(0) probably_damaging(0.995) TCGA-R5-A804-01 18 42281519 42281519 G T SETBP1 Missense_Mutation p.D70Y 0.16 deleterious(0) probably_damaging(0.999) TCGA-R5-A804-01 18 7080031 7080031 G T LAMA1 Silent p.P96P 0.14 TCGA-R5-A804-01 19 37129850 37129850 T C ZNF461 Missense_Mutation p.E466G 0.09 deleterious(0) probably_damaging(0.999) TCGA-R5-A804-01 19 52327880 52327880 T A FPR3 Missense_Mutation p.F293L 0.18 tolerated(0.15) benign(0.123) TCGA-R5-A804-01 19 53303028 53303028 A G ZNF28 Silent p.P690P 0.10 TCGA-R5-A804-01 19 8953883 8953883 C T MBD3L1 Missense_Mutation p.L177F 0.17 deleterious(0.03) benign(0.225) TCGA-R5-A804-01 1 12954984 12954984 A C PRAMEF10 Missense_Mutation p.L100R 0.11 deleterious(0) probably_damaging(0.997) TCGA-R5-A804-01 1 152286834 152286834 G T FLG Missense_Mutation p.N176K 0.15 benign(0.045) TCGA-R5-A804-01 1 158325181 158325181 T G CD1E Missense_Mutation p.S149R 0.21 deleterious(0.04) benign(0.139) TCGA-R5-A804-01 1 160340717 160340717 C T NHLH1 Missense_Mutation p.R66C 0.33 deleterious(0) possibly_damaging(0.689) TCGA-R5-A804-01 1 206331081 206331081 C T CTSE Missense_Mutation p.P363S 0.13 deleterious(0.05) probably_damaging(0.937) TCGA-R5-A804-01 1 207105025 207105025 C A PIGR Nonsense_Mutation p.G711* 0.17 TCGA-R5-A804-01 1 247614785 247614785 G A OR2B11 Missense_Mutation p.T167M 0.16 deleterious(0.02) probably_damaging(0.999) TCGA-R5-A804-01 1 248344178 248344178 G T OR2M2 Silent p.V297V 0.16 TCGA-R5-A804-01 1 27089594 27089594 T G ARID1A Nonsense_Mutation p.Y850* 0.31 TCGA-R5-A804-01 1 891584 891584 A C NOC2L Silent p.T166T 0.36 TCGA-R5-A804-01 20 1552398 1552398 C T SIRPB1 Missense_Mutation p.R240H 0.21 deleterious(0.05) benign(0.046) TCGA-R5-A804-01 20 43108870 43108870 C T TTPAL Silent p.D77D 0.25 TCGA-R5-A804-01 20 7895008 7895008 T C HAO1 Silent p.E116E 0.07 TCGA-R5-A804-01 22 37770960 37770960 G A ELFN2 Silent p.N205N 0.17 TCGA-R5-A804-01 22 43933363 43933363 C T EFCAB6 Silent p.E1314E 0.13 TCGA-R5-A804-01 2 1670168 1670168 G A PXDN Missense_Mutation p.P370L 0.15 tolerated(0.43) benign(0.001) TCGA-R5-A804-01 2 170493029 170493029 G A PPIG Missense_Mutation p.E421K 0.37 tolerated(0.3) unknown(0) TCGA-R5-A804-01 2 179596487 179596487 G A TTN Silent p.G5705G 0.32 TCGA-R5-A804-01 2 19552930 19552930 G A OSR1 Missense_Mutation p.R213W 0.14 deleterious(0) probably_damaging(1) TCGA-R5-A804-01 2 220116796 220116798 AGA - TUBA4A In_Frame_Del p.F53del 0.30 TCGA-R5-A804-01 2 231331020 231331020 C A SP100 Silent p.P382P 0.10 TCGA-R5-A804-01 2 29092561 29092562 - C TRMT61B Frame_Shift_Ins p.K195Efs*13 0.18 TCGA-R5-A804-01 3 100275749 100275749 T C TMEM45A Silent p.C112C 0.18 TCGA-R5-A804-01 3 129251504 129251504 C G RHO Missense_Mutation p.I275M 0.21 tolerated(0.2) probably_damaging(0.999) TCGA-R5-A804-01 3 30713816 30713816 A G TGFBR2 Missense_Mutation p.K406E 0.32 deleterious(0) probably_damaging(0.999) TCGA-R5-A804-01 3 48218858 48218858 C T CDC25A Intron 0.11 TCGA-R5-A804-01 3 48218929 48218929 C T CDC25A Missense_Mutation p.E230K 0.17 deleterious(0.02) benign(0.142) TCGA-R5-A804-01 3 49413009 49413009 C T RHOA Missense_Mutation p.R5Q 0.16 tolerated(0.06) benign(0.012) TCGA-R5-A804-01 3 56044587 56044587 G A ERC2 Nonsense_Mutation p.R604* 0.12 TCGA-R5-A804-01 4 121957512 121957512 G T NDNF Silent p.G538G 0.06 TCGA-R5-A804-01 4 188924767 188924767 A T ZFP42 Missense_Mutation p.H269L 0.17 deleterious(0) probably_damaging(0.998) TCGA-R5-A804-01 4 90816173 90816173 C T MMRN1 Silent p.G17G 0.09 TCGA-R5-A804-01 5 168233469 168233469 G A SLIT3 Missense_Mutation p.P306L 0.12 deleterious(0) probably_damaging(1) TCGA-R5-A804-01 5 56777862 56777862 C A ACTBL2 Nonsense_Mutation p.E225* 0.09 TCGA-R5-A804-01 5 72850780 72850780 C T ANKRA2 Missense_Mutation p.R215Q 0.10 tolerated(0.33) benign(0.006) TCGA-R5-A804-01 6 50011401 50011401 T G DEFB112 Silent p.R77R 0.14 TCGA-R5-A804-01 6 51914991 51914991 G T PKHD1 Missense_Mutation p.A748E 0.13 deleterious(0.01) possibly_damaging(0.794) TCGA-R5-A804-01 6 80203350 80203350 G A LCA5 Nonsense_Mutation p.R280* 0.20 TCGA-R5-A804-01 7 110763639 110763639 C A LRRN3 Missense_Mutation p.P271T 0.15 deleterious(0) probably_damaging(1) TCGA-R5-A804-01 7 121608131 121608131 G T PTPRZ1 Missense_Mutation p.G84V 0.11 deleterious(0) probably_damaging(0.995) TCGA-R5-A804-01 7 148716290 148716291 - T PDIA4 Splice_Site p.X90_splice 0.11 TCGA-R5-A804-01 7 148801757 148801757 G A ZNF425 Silent p.D402D 0.08 TCGA-R5-A804-01 7 154862726 154862726 C T HTR5A Silent p.F39F 0.11 TCGA-R5-A804-01 7 23821101 23821101 A G STK31 Missense_Mutation p.N677D 0.09 tolerated(0.26) benign(0.004) TCGA-R5-A804-01 7 33312730 33312730 G T BBS9 Missense_Mutation p.C270F 0.14 deleterious(0) benign(0.425) TCGA-R5-A804-01 8 131955666 131955666 C T ADCY8 Silent p.T428T 0.12 TCGA-R5-A804-01 8 135524778 135524778 C T ZFAT Missense_Mutation p.V1101I 0.12 tolerated(0.15) benign(0.403) TCGA-R5-A804-01 8 135669961 135669961 C A ZFAT Missense_Mutation p.M13I 0.09 deleterious(0) possibly_damaging(0.885) TCGA-R5-A804-01 8 15967668 15967668 C A MSR1 Nonsense_Mutation p.E428* 0.04 TCGA-R5-A804-01 8 25898456 25898456 G A EBF2 Silent p.N117N 0.09 TCGA-R5-A804-01 8 72128979 72128979 G A EYA1 Silent p.F436F 0.20 TCGA-R5-A804-01 9 123201862 123201862 G A CDK5RAP2 Silent p.Y1179Y 0.25 TCGA-R5-A804-01 9 139092476 139092476 C T LHX3 Missense_Mutation p.R73H 0.18 deleterious(0) possibly_damaging(0.829) TCGA-R5-A804-01 9 139913367 139913367 C G ABCA2 Missense_Mutation p.Q570H 0.08 tolerated(0.36) benign(0.005) TCGA-R5-A804-01 9 77378022 77378022 C A TRPM6 Nonsense_Mutation p.E1189* 0.06 TCGA-R5-A804-01 X 54037693 54037693 G A PHF8 Missense_Mutation p.R306C 0.10 deleterious(0) possibly_damaging(0.839) TCGA-R5-A804-01 X 65392220 65392220 C T HEPH Missense_Mutation p.S118F 0.32 deleterious(0.02) possibly_damaging(0.498) TCGA-R5-A804-01 X 83319382 83319382 A G RPS6KA6 Missense_Mutation p.L714P 0.45 deleterious(0.01) possibly_damaging(0.58) TCGA-R5-A804-01 X 91132451 91132451 C A PCDH11X Silent p.I404I 0.18 TCGA-R5-A805-01 10 105037125 105037125 G A INA Missense_Mutation p.A53T 0.36 tolerated(0.47) benign(0.054) TCGA-R5-A805-01 10 118957178 118957178 A C KCNK18 Missense_Mutation p.K60T 0.45 tolerated(0.38) benign(0.002) TCGA-R5-A805-01 10 126631678 126631678 A C ZRANB1 Missense_Mutation p.S206R 0.58 tolerated(0.13) benign(0.122) TCGA-R5-A805-01 10 26508089 26508089 T C GAD2 Missense_Mutation p.F135S 0.18 deleterious(0) probably_damaging(0.988) TCGA-R5-A805-01 10 81060645 81060645 C T ZMIZ1 Silent p.H655H 0.68 TCGA-R5-A805-01 10 89711874 89711874 G A PTEN Splice_Site p.X165_splice 0.30 TCGA-R5-A805-01 11 111430953 111430953 C T LAYN Missense_Mutation p.R307W 0.33 deleterious(0) probably_damaging(1) TCGA-R5-A805-01 11 124121194 124121194 A T OR8G1 Missense_Mutation p.M258L 0.23 deleterious_low_confidence(0) benign(0.025) TCGA-R5-A805-01 11 48177374 48177374 T G PTPRJ Missense_Mutation p.L1084R 0.30 deleterious(0) probably_damaging(1) TCGA-R5-A805-01 11 4945544 4945544 A G OR51G1 Missense_Mutation p.L9P 0.25 tolerated(0.05) benign(0.003) TCGA-R5-A805-01 11 55065576 55065576 T G TRIM51HP RNA 0.18 TCGA-R5-A805-01 11 5510808 5510808 T C OR52D1 Missense_Mutation p.L291P 0.17 deleterious(0) probably_damaging(0.999) TCGA-R5-A805-01 11 55595218 55595218 A G OR5L2 Missense_Mutation p.N175S 0.27 deleterious(0.02) possibly_damaging(0.771) TCGA-R5-A805-01 11 55860814 55860814 G A OR8I2 Missense_Mutation p.V11I 0.23 deleterious(0.04) benign(0.009) TCGA-R5-A805-01 11 71946756 71946756 G A INPPL1 Silent p.K899K 0.33 TCGA-R5-A805-01 11 86519094 86519094 T C PRSS23 Missense_Mutation p.F137L 0.23 deleterious(0) probably_damaging(0.997) TCGA-R5-A805-01 12 104476586 104476586 G A HCFC2 Missense_Mutation p.G324S 0.25 tolerated(0.06) possibly_damaging(0.585) TCGA-R5-A805-01 12 109046145 109046145 C T CORO1C Missense_Mutation p.V302I 0.33 tolerated(0.31) benign(0.147) TCGA-R5-A805-01 12 22354674 22354674 A G ST8SIA1 Missense_Mutation p.F295L 0.22 deleterious(0) probably_damaging(0.998) TCGA-R5-A805-01 12 41374760 41374760 T G CNTN1 Silent p.T618T 0.21 TCGA-R5-A805-01 12 41423012 41423012 A G CNTN1 Missense_Mutation p.K991E 0.20 tolerated(0.22) benign(0.114) TCGA-R5-A805-01 12 41463801 41463801 G T CNTN1 Silent p.L1007L 0.18 TCGA-R5-A805-01 12 4829827 4829827 C T GALNT8 5'UTR 0.30 TCGA-R5-A805-01 12 52964596 52964596 G A KRT74 Missense_Mutation p.H289Y 0.22 deleterious(0.01) benign(0.208) TCGA-R5-A805-01 12 56113319 56113319 G A BLOC1S1 Missense_Mutation p.E130K 0.10 deleterious(0.02) possibly_damaging(0.723) TCGA-R5-A805-01 12 7640585 7640585 A G CD163 Missense_Mutation p.F507L 0.19 tolerated(0.06) benign(0.308) TCGA-R5-A805-01 12 93150131 93150131 A T PLEKHG7 Nonsense_Mutation p.R222* 0.18 TCGA-R5-A805-01 13 32352709 32352709 A C RXFP2 Missense_Mutation p.Q258H 0.18 tolerated(0.2) benign(0.001) TCGA-R5-A805-01 14 101531667 101531667 T A MIR409 RNA 0.28 TCGA-R5-A805-01 14 20249070 20249070 T G OR4M1 Missense_Mutation p.L197V 0.10 tolerated(0.37) benign(0.371) TCGA-R5-A805-01 14 26917395 26917395 A G NOVA1 Silent p.L432L 0.17 TCGA-R5-A805-01 14 74824985 74824985 T G VRTN Missense_Mutation p.L500R 0.20 tolerated(0.36) benign(0.002) TCGA-R5-A805-01 15 28326929 28326929 A C OCA2 Missense_Mutation p.L31R 0.31 tolerated_low_confidence(0.46) benign(0.003) TCGA-R5-A805-01 15 29346178 29346178 A G APBA2 Missense_Mutation p.S31G 0.11 tolerated_low_confidence(0.28) benign(0) TCGA-R5-A805-01 15 48053181 48053181 A C SEMA6D Missense_Mutation p.Q76H 0.27 tolerated(1) probably_damaging(0.999) TCGA-R5-A805-01 15 81234301 81234301 C T KIAA1199 Silent p.G1173G 0.38 TCGA-R5-A805-01 15 84694138 84694138 A G ADAMTSL3 Missense_Mutation p.R1536G 0.05 tolerated(0.29) benign(0.008) TCGA-R5-A805-01 15 88576204 88576204 G A NTRK3 Missense_Mutation p.T490M 0.33 tolerated(0.06) probably_damaging(0.957) TCGA-R5-A805-01 16 30976448 30976448 C A SETD1A Missense_Mutation p.P462Q 0.16 benign(0.3) TCGA-R5-A805-01 16 53319522 53319522 G - CHD9 Frame_Shift_Del p.V1662Yfs*87 0.15 TCGA-R5-A805-01 17 10303962 10303962 A C MYH8 Silent p.T1160T 0.28 TCGA-R5-A805-01 17 11511578 11511578 A C DNAH9 Missense_Mutation p.T184P 0.28 benign(0.423) TCGA-R5-A805-01 17 18064645 18064645 G A MYO15A Missense_Mutation p.R3134Q 0.35 unknown(0) TCGA-R5-A805-01 17 27778696 27778696 T A TAOK1 Missense_Mutation p.F44I 0.44 deleterious(0) probably_damaging(0.934) TCGA-R5-A805-01 17 3182220 3182220 G T OR3A2 Missense_Mutation p.Q4K 0.33 tolerated_low_confidence(0.36) benign(0) TCGA-R5-A805-01 17 35583318 35583318 G A ACACA Missense_Mutation p.T1101I 0.35 tolerated(0.11) benign(0.109) TCGA-R5-A805-01 17 43246671 43246671 G A HEXIM2 Missense_Mutation p.R119K 0.43 tolerated(0.25) benign(0.01) TCGA-R5-A805-01 17 78348265 78348265 G A RNF213 Missense_Mutation p.R4317Q 0.16 benign(0.001) TCGA-R5-A805-01 18 12449700 12449700 G A SPIRE1 Silent p.F736F 0.17 TCGA-R5-A805-01 18 5293246 5293246 G A ZBTB14 5'UTR 0.09 TCGA-R5-A805-01 18 65179896 65179896 T G DSEL Missense_Mutation p.E660D 0.25 tolerated(0.35) benign(0.224) TCGA-R5-A805-01 18 6868156 6868156 T G ARHGAP28 Missense_Mutation p.L86R 0.17 tolerated(0.06) possibly_damaging(0.713) TCGA-R5-A805-01 19 14991857 14991857 A C OR7A17 Missense_Mutation p.F104C 0.23 deleterious_low_confidence(0.01) benign(0.043) TCGA-R5-A805-01 19 22939291 22939291 A C ZNF99 3'Flank 0.14 TCGA-R5-A805-01 19 37310989 37310989 T G ZNF790 Missense_Mutation p.K86T 0.18 tolerated(0.05) benign(0.004) TCGA-R5-A805-01 19 43349209 43349209 T G PSG10P RNA 0.06 TCGA-R5-A805-01 19 53644678 53644678 C T ZNF347 Missense_Mutation p.R469H 0.23 tolerated(0.69) benign(0.001) TCGA-R5-A805-01 19 53645614 53645614 A G ZNF347 Missense_Mutation p.L157P 0.18 tolerated(1) benign(0.376) TCGA-R5-A805-01 19 9063142 9063142 T G MUC16 Missense_Mutation p.T8102P 0.28 unknown(0) TCGA-R5-A805-01 19 9091605 9091605 C T MUC16 Silent p.S70S 0.19 TCGA-R5-A805-01 1 110998991 110998991 G A PROK1 3'UTR 0.31 TCGA-R5-A805-01 1 111861196 111861196 T G CHIA Missense_Mutation p.F271V 0.25 deleterious(0) probably_damaging(0.971) TCGA-R5-A805-01 1 1153858 1153858 C T SDF4 Missense_Mutation p.V298M 0.19 tolerated(0.05) probably_damaging(0.997) TCGA-R5-A805-01 1 12820853 12820853 C T C1orf158 Missense_Mutation p.P185L 0.07 deleterious(0.05) benign(0.085) TCGA-R5-A805-01 1 158152002 158152002 A C CD1D Missense_Mutation p.K170T 0.23 deleterious(0.01) benign(0.042) TCGA-R5-A805-01 1 158517349 158517349 A C OR6Y1 Missense_Mutation p.F183V 0.19 deleterious(0.02) possibly_damaging(0.874) TCGA-R5-A805-01 1 158687131 158687131 A G OR6K3 Silent p.L259L 0.23 TCGA-R5-A805-01 1 165380010 165380010 A C RXRG Missense_Mutation p.V281G 0.23 deleterious(0) probably_damaging(1) TCGA-R5-A805-01 1 169923152 169923152 C A KIFAP3 Missense_Mutation p.S758I 0.19 deleterious(0.04) benign(0.005) TCGA-R5-A805-01 1 170928682 170928682 A C MROH9 Missense_Mutation p.S78R 0.20 deleterious(0.04) possibly_damaging(0.735) TCGA-R5-A805-01 1 196311298 196311298 T G KCNT2 Missense_Mutation p.E488D 0.23 deleterious(0) probably_damaging(0.992) TCGA-R5-A805-01 1 197390928 197390928 A C CRB1 Missense_Mutation p.N657T 0.21 deleterious(0) possibly_damaging(0.493) TCGA-R5-A805-01 1 201120972 201120972 T G TMEM9 Missense_Mutation p.E25D 0.22 tolerated(0.08) benign(0.052) TCGA-R5-A805-01 1 203192384 203192384 A C CHIT1 Missense_Mutation p.L162V 0.12 deleterious(0.01) probably_damaging(0.982) TCGA-R5-A805-01 1 52759142 52759142 T G ZFYVE9 Missense_Mutation p.L1015V 0.17 deleterious(0.01) possibly_damaging(0.606) TCGA-R5-A805-01 1 86306947 86306947 T G COL24A1 Missense_Mutation p.E1195D 0.11 tolerated(0.98) benign(0.09) TCGA-R5-A805-01 1 87033226 87033226 G A CLCA4 Silent p.K358K 0.33 TCGA-R5-A805-01 1 92433759 92433759 A C BRDT Missense_Mutation p.K129N 0.17 deleterious(0) probably_damaging(0.982) TCGA-R5-A805-01 20 32868786 32868786 G C AHCY 3'UTR 0.20 TCGA-R5-A805-01 20 33565874 33565874 G A MYH7B Silent p.T64T 0.10 TCGA-R5-A805-01 20 40877454 40877454 T G PTPRT Missense_Mutation p.T729P 0.29 tolerated(0.17) possibly_damaging(0.637) TCGA-R5-A805-01 20 44444262 44444262 C G UBE2C Missense_Mutation p.T100R 0.27 deleterious(0) probably_damaging(0.993) TCGA-R5-A805-01 21 19629091 19629091 C G CHODL Missense_Mutation p.C115W 0.29 deleterious(0) probably_damaging(1) TCGA-R5-A805-01 22 17488993 17488993 C T GAB4 Silent p.P4P 0.22 TCGA-R5-A805-01 2 138169313 138169313 A C THSD7B Silent p.R944R 0.11 TCGA-R5-A805-01 2 141816568 141816568 G A LRP1B Missense_Mutation p.S431F 0.22 benign(0.112) TCGA-R5-A805-01 2 145154083 145154083 C T ZEB2 Missense_Mutation p.R988H 0.23 deleterious(0) probably_damaging(0.948) TCGA-R5-A805-01 2 179397542 179397542 C T TTN Nonsense_Mutation p.W34600* 0.08 TCGA-R5-A805-01 2 179639659 179639659 A C TTN Missense_Mutation p.L2260R 0.15 TCGA-R5-A805-01 2 185803409 185803409 A C ZNF804A Missense_Mutation p.T1096P 0.19 deleterious(0) probably_damaging(0.981) TCGA-R5-A805-01 2 212587166 212587166 A C ERBB4 Missense_Mutation p.F279V 0.21 deleterious(0.05) benign(0.001) TCGA-R5-A805-01 2 220353226 220353226 A C SPEG Missense_Mutation p.K2622T 0.25 benign(0.105) TCGA-R5-A805-01 2 220404338 220404338 C G CHPF Missense_Mutation p.E699Q 0.16 tolerated(0.07) possibly_damaging(0.593) TCGA-R5-A805-01 2 232072855 232072855 G C ARMC9 Missense_Mutation p.E23Q 0.11 tolerated(0.22) benign(0.03) TCGA-R5-A805-01 2 238285554 238285554 G A COL6A3 Silent p.N977N 0.08 TCGA-R5-A805-01 2 242035331 242035331 A T MTERFD2 3'UTR 0.19 TCGA-R5-A805-01 2 26683866 26683866 G A OTOF Missense_Mutation p.R1856W 0.26 deleterious(0) possibly_damaging(0.762) TCGA-R5-A805-01 2 49244662 49244662 C G FSHR Missense_Mutation p.E114Q 0.22 tolerated(0.25) benign(0.001) TCGA-R5-A805-01 2 63175543 63175543 A C EHBP1 Missense_Mutation p.Q556P 0.34 deleterious(0) probably_damaging(0.997) TCGA-R5-A805-01 3 107097190 107097190 T G CCDC54 Silent p.T252T 0.21 TCGA-R5-A805-01 3 108682272 108682272 T C MORC1 Missense_Mutation p.K930E 0.21 deleterious(0) benign(0.242) TCGA-R5-A805-01 3 1363367 1363367 C T CNTN6 Silent p.D265D 0.17 TCGA-R5-A805-01 3 145804693 145804693 T G PLOD2 Missense_Mutation p.E336D 0.23 tolerated(0.27) benign(0.072) TCGA-R5-A805-01 3 151095920 151095920 T G MED12L Silent p.G1444G 0.25 TCGA-R5-A805-01 3 178937376 178937376 A G PIK3CA Silent p.K588K 0.16 TCGA-R5-A805-01 3 182751817 182751817 G A MCCC1 Missense_Mutation p.S548L 0.18 tolerated(0.34) benign(0.001) TCGA-R5-A805-01 3 186570998 186570998 G A ADIPOQ Missense_Mutation p.G51R 0.16 deleterious(0) probably_damaging(1) TCGA-R5-A805-01 3 42236308 42236308 G C TRAK1 Missense_Mutation p.E330Q 0.26 tolerated(1) probably_damaging(0.999) TCGA-R5-A805-01 3 49689243 49689243 G A BSN Missense_Mutation p.G752S 0.08 unknown(0) TCGA-R5-A805-01 3 62739150 62739150 T G CADPS Missense_Mutation p.K285T 0.22 deleterious(0) benign(0.403) TCGA-R5-A805-01 3 73024223 73024223 A G GXYLT2 Silent p.Q415Q 0.21 TCGA-R5-A805-01 4 134072241 134072241 T G PCDH10 Missense_Mutation p.L316V 0.34 tolerated(0.52) benign(0.028) TCGA-R5-A805-01 4 1347133 1347133 T C UVSSA Missense_Mutation p.L289P 0.40 tolerated(0.22) benign(0.001) TCGA-R5-A805-01 4 166416759 166416759 T G CPE Missense_Mutation p.L421R 0.30 deleterious(0.01) possibly_damaging(0.776) TCGA-R5-A805-01 4 167833843 167833843 G A SPOCK3 Silent p.S137S 0.26 TCGA-R5-A805-01 4 187004142 187004142 A C TLR3 Missense_Mutation p.E434D 0.15 tolerated(0.06) benign(0.003) TCGA-R5-A805-01 4 952215 952215 C T TMEM175 Silent p.P482P 0.44 TCGA-R5-A805-01 4 99338026 99338026 A C RAP1GDS1 Missense_Mutation p.L299F 0.28 deleterious(0.03) probably_damaging(0.986) TCGA-R5-A805-01 5 131819646 131819646 C T IRF1 Silent p.P325P 0.22 TCGA-R5-A805-01 5 140189039 140189039 C A PCDHA4 Missense_Mutation p.P756Q 0.27 tolerated_low_confidence(1) benign(0.001) TCGA-R5-A805-01 5 140207889 140207889 C T PCDHA6 Silent p.R71R 0.23 TCGA-R5-A805-01 5 140237239 140237239 G A PCDHA10 Missense_Mutation p.A536T 0.18 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-R5-A805-01 5 153796519 153796519 T G GALNT10 Missense_Mutation p.F600C 0.23 deleterious(0.01) probably_damaging(0.991) TCGA-R5-A805-01 5 156915430 156915430 A C ADAM19 Missense_Mutation p.L798R 0.28 tolerated(0.23) benign(0.015) TCGA-R5-A805-01 5 179192744 179192749 AACCTT - MAML1 In_Frame_Del p.L246_N247del 0.20 TCGA-R5-A805-01 5 50090917 50090917 G C PARP8 Missense_Mutation p.R365P 0.14 tolerated_low_confidence(0.07) benign(0.142) TCGA-R5-A805-01 5 6337365 6337365 T G CTD-2324F15.2 RNA 0.14 TCGA-R5-A805-01 6 110424686 110424686 A C WASF1 Missense_Mutation p.L263R 0.28 tolerated(0.11) unknown(0) TCGA-R5-A805-01 6 117586953 117586953 A C VGLL2 Missense_Mutation p.Q9H 0.21 tolerated(0.26) probably_damaging(0.997) TCGA-R5-A805-01 6 13977209 13977209 A C RNF182 5'UTR 0.27 TCGA-R5-A805-01 6 146720607 146720607 A C GRM1 Missense_Mutation p.K811T 0.21 deleterious(0) probably_damaging(0.999) TCGA-R5-A805-01 6 38897314 38897314 C T DNAH8 Missense_Mutation p.R3499C 0.05 probably_damaging(1) TCGA-R5-A805-01 6 395910 395910 C T IRF4 Missense_Mutation p.T156M 0.26 tolerated(0.08) benign(0.011) TCGA-R5-A805-01 6 76744045 76744045 T G IMPG1 Missense_Mutation p.S162R 0.27 tolerated(0.62) benign(0.004) TCGA-R5-A805-01 6 80723078 80723078 T A TTK Missense_Mutation p.L327I 0.18 tolerated(0.12) benign(0.012) TCGA-R5-A805-01 6 83947439 83947439 A G ME1 Silent p.V341V 0.27 TCGA-R5-A805-01 7 128477754 128477754 C T FLNC Missense_Mutation p.A305V 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-R5-A805-01 7 141418931 141418931 T G WEE2 Silent p.V215V 0.14 TCGA-R5-A805-01 7 143632419 143632419 T C OR2F2 Silent p.L32L 0.18 TCGA-R5-A805-01 7 151879327 151879327 G T KMT2C Missense_Mutation p.T1873N 0.24 benign(0.002) TCGA-R5-A805-01 7 23358875 23358875 T G IGF2BP3 Splice_Site p.X402_splice 0.24 TCGA-R5-A805-01 7 63709435 63709435 G A ZNF679 5'UTR 0.30 TCGA-R5-A805-01 7 6731332 6731332 C T ZNF12 Missense_Mutation p.C414Y 0.10 deleterious(0) probably_damaging(1) TCGA-R5-A805-01 7 82584231 82584231 T C PCLO Missense_Mutation p.E2013G 0.27 unknown(0) TCGA-R5-A805-01 7 94057073 94057073 A T COL1A2 Missense_Mutation p.E1134D 0.29 unknown(0) TCGA-R5-A805-01 8 113650996 113650996 T C CSMD3 Missense_Mutation p.N1152S 0.34 tolerated(0.11) possibly_damaging(0.868) TCGA-R5-A805-01 8 124105858 124105858 A G TBC1D31 Missense_Mutation p.I183V 0.21 deleterious(0) possibly_damaging(0.878) TCGA-R5-A805-01 8 62289177 62289177 G T CLVS1 Missense_Mutation p.D157Y 0.05 deleterious(0) possibly_damaging(0.889) TCGA-R5-A805-01 8 76452251 76452251 A C HNF4G Missense_Mutation p.E8D 0.36 tolerated(0.46) benign(0.013) TCGA-R5-A805-01 9 39177457 39177457 G A CNTNAP3 Missense_Mutation p.T262I 0.15 deleterious(0.04) benign(0.16) TCGA-R5-A805-01 X 101098169 101098169 A G NXF5 5'UTR 0.46 TCGA-R5-A805-01 X 109696864 109696864 A G RGAG1 Missense_Mutation p.T1007A 0.05 deleterious(0.03) possibly_damaging(0.544) TCGA-R5-A805-01 X 130410206 130410206 G A IGSF1 Silent p.P880P 0.41 TCGA-R5-A805-01 X 131208168 131208168 C T MST4 Missense_Mutation p.S411L 0.40 deleterious_low_confidence(0) benign(0.03) TCGA-R5-A805-01 X 140995001 140995001 A T MAGEC1 Missense_Mutation p.D604V 0.47 tolerated_low_confidence(0.34) possibly_damaging(0.804) TCGA-R5-A805-01 X 153690649 153690649 A C PLXNA3 Missense_Mutation p.K439T 0.42 deleterious(0.01) probably_damaging(0.982) TCGA-R5-A805-01 X 17750499 17750499 C T NHS Missense_Mutation p.T1603M 0.29 deleterious(0) possibly_damaging(0.867) TCGA-R5-A805-01 X 48161156 48161156 A C SSX9 RNA 0.44 TCGA-R5-A805-01 X 49068355 49068355 C T CACNA1F Intron 0.44 TCGA-R5-A805-01 X 49161381 49161381 C G GAGE10 Missense_Mutation p.L15V 0.42 tolerated(0.52) benign(0.049) TCGA-RD-A7BS-01 10 115356937 115356937 A G NRAP Missense_Mutation p.Y1447H 0.18 deleterious(0) probably_damaging(0.998) TCGA-RD-A7BS-01 10 12259410 12259410 C T CDC123 Silent p.S128S 0.13 TCGA-RD-A7BS-01 11 132184634 132184634 G C NTM Intron 0.22 TCGA-RD-A7BS-01 11 66358079 66358079 C T CCDC87 Missense_Mutation p.R803Q 0.13 deleterious(0.03) benign(0.324) TCGA-RD-A7BS-01 11 71932037 71932037 C T FOLR2 Missense_Mutation p.R92C 0.07 deleterious(0) benign(0.22) TCGA-RD-A7BS-01 11 73849766 73849766 T C C2CD3 Silent p.S318S 0.19 TCGA-RD-A7BS-01 11 9096029 9096029 T C SCUBE2 Silent p.E172E 0.13 TCGA-RD-A7BS-01 16 2150219 2150219 C T PKD1 Silent p.S3220S 0.13 TCGA-RD-A7BS-01 16 56716405 56716405 T A MT1X 5'UTR 0.19 TCGA-RD-A7BS-01 16 57741392 57741392 G A CCDC135 Silent p.P293P 0.10 TCGA-RD-A7BS-01 16 72984716 72984716 G A ZFHX3 Silent p.D956D 0.25 TCGA-RD-A7BS-01 16 74640647 74640647 C T GLG1 Missense_Mutation p.E116K 0.18 tolerated(0.66) benign(0.012) TCGA-RD-A7BS-01 17 16852054 16852054 G A TNFRSF13B Missense_Mutation p.P148L 0.16 deleterious(0.04) benign(0.038) TCGA-RD-A7BS-01 17 25748082 25748082 G T TBC1D3P5 RNA 0.21 TCGA-RD-A7BS-01 17 33738912 33738912 G A SLFN12 Silent p.N394N 0.14 TCGA-RD-A7BS-01 19 11660634 11660634 C T CNN1 3'UTR 0.05 TCGA-RD-A7BS-01 19 53611606 53611606 A C ZNF415 3'UTR 0.40 TCGA-RD-A7BS-01 19 56235423 56235423 G A NLRP9 Silent p.G694G 0.39 TCGA-RD-A7BS-01 19 57133786 57133786 C A ZNF71 Silent p.T377T 0.08 TCGA-RD-A7BS-01 19 7976134 7976134 G A MAP2K7 Splice_Site p.X286_splice 0.24 TCGA-RD-A7BS-01 1 228525644 228525644 G T OBSCN Splice_Site p.X6558_splice 0.13 TCGA-RD-A7BS-01 1 236195854 236195854 C T NID1 Missense_Mutation p.V462I 0.09 tolerated(0.32) probably_damaging(0.935) TCGA-RD-A7BS-01 1 62976306 62976306 T G DOCK7 Missense_Mutation p.N1410H 0.14 deleterious(0.01) benign(0.026) TCGA-RD-A7BS-01 1 8390543 8390543 G A SLC45A1 Silent p.T330T 0.08 TCGA-RD-A7BS-01 20 14306243 14306243 C A FLRT3 Missense_Mutation p.R637I 0.10 deleterious(0.02) probably_damaging(0.999) TCGA-RD-A7BS-01 20 30409490 30409490 G A MYLK2 Missense_Mutation p.G241E 0.17 tolerated(0.17) benign(0.034) TCGA-RD-A7BS-01 20 43851369 43851369 C A SEMG2 Missense_Mutation p.Q366K 0.22 tolerated(0.17) probably_damaging(0.926) TCGA-RD-A7BS-01 20 49620847 49620847 G A KCNG1 Missense_Mutation p.T424M 0.13 deleterious(0) probably_damaging(1) TCGA-RD-A7BS-01 2 107041296 107041296 G T RGPD3 Missense_Mutation p.Q1043K 0.12 tolerated(0.22) benign(0.163) TCGA-RD-A7BS-01 2 15359018 15359018 C T NBAS Missense_Mutation p.R2104Q 0.26 tolerated(0.36) benign(0.109) TCGA-RD-A7BS-01 2 154334935 154334935 G A RPRM Missense_Mutation p.R49C 0.10 deleterious(0) probably_damaging(0.942) TCGA-RD-A7BS-01 2 18766073 18766073 G A NT5C1B Missense_Mutation p.R204W 0.09 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-RD-A7BS-01 2 202483773 202483773 G C ALS2CR11 Silent p.T27T 0.10 TCGA-RD-A7BS-01 2 219495370 219495370 C A PLCD4 Intron 0.09 TCGA-RD-A7BS-01 2 32656004 32656004 G A BIRC6 Missense_Mutation p.E1032K 0.12 probably_damaging(0.98) TCGA-RD-A7BS-01 2 37215971 37215971 G A HEATR5B Missense_Mutation p.S1910L 0.07 deleterious(0.04) possibly_damaging(0.881) TCGA-RD-A7BS-01 2 40657012 40657012 G T SLC8A1 Missense_Mutation p.L137M 0.11 deleterious(0) probably_damaging(1) TCGA-RD-A7BS-01 3 164786515 164786515 A G SI Missense_Mutation p.F160L 0.24 deleterious(0.02) benign(0.124) TCGA-RD-A7BS-01 4 162307022 162307022 A G FSTL5 Silent p.G807G 0.06 TCGA-RD-A7BS-01 5 140209734 140209734 C T PCDHA6 Silent p.A686A 0.18 TCGA-RD-A7BS-01 5 150682788 150682788 G A SLC36A3 Missense_Mutation p.S43L 0.21 deleterious(0.01) benign(0.073) TCGA-RD-A7BS-01 5 178700027 178700027 G A ADAMTS2 Silent p.I191I 0.17 TCGA-RD-A7BS-01 5 6652021 6652021 G A SRD5A1 Silent p.A120A 0.07 TCGA-RD-A7BS-01 5 71493747 71493747 C T MAP1B Missense_Mutation p.S1522F 0.06 probably_damaging(0.998) TCGA-RD-A7BS-01 5 86672269 86672269 C G RASA1 Missense_Mutation p.L691V 0.16 tolerated(0.33) benign(0.049) TCGA-RD-A7BS-01 6 109274249 109274249 G A ARMC2 Missense_Mutation p.R537H 0.18 deleterious(0.04) probably_damaging(1) TCGA-RD-A7BS-01 6 161551915 161551915 G T AGPAT4 3'UTR 0.12 TCGA-RD-A7BS-01 6 30073011 30073011 G A TRIM31 Nonsense_Mutation p.Q298* 0.09 TCGA-RD-A7BS-01 6 30131743 30131743 C T TRIM15 Silent p.C94C 0.07 TCGA-RD-A7BS-01 6 93979255 93979255 T G EPHA7 Missense_Mutation p.N525H 0.20 tolerated(0.16) benign(0.353) TCGA-RD-A7BS-01 7 100174731 100174731 C T LRCH4 Missense_Mutation p.V448M 0.06 tolerated(0.22) benign(0.118) TCGA-RD-A7BS-01 7 112412891 112412891 C T TMEM168 Silent p.T497T 0.07 TCGA-RD-A7BS-01 7 117180375 117180375 C G CFTR Missense_Mutation p.S364C 0.10 tolerated(0.11) benign(0.033) TCGA-RD-A7BS-01 7 149462920 149462920 C T ZNF467 Missense_Mutation p.R224H 0.15 tolerated(0.29) probably_damaging(0.991) TCGA-RD-A7BS-01 7 15240851 15240851 C T AGMO 3'UTR 0.16 TCGA-RD-A7BS-01 7 33102236 33102236 G A NT5C3A Nonsense_Mutation p.Q33* 0.11 TCGA-RD-A7BS-01 8 110592047 110592047 C T SYBU Missense_Mutation p.D239N 0.16 tolerated(0.25) probably_damaging(0.999) TCGA-RD-A7BS-01 8 142437149 142437149 C T PTP4A3 Silent p.H103H 0.15 TCGA-RD-A7BS-01 8 42587096 42587096 G A CHRNB3 Missense_Mutation p.G216S 0.06 tolerated(0.48) possibly_damaging(0.595) TCGA-RD-A7BS-01 9 101891170 101891170 A T TGFBR1 Missense_Mutation p.D44V 0.14 deleterious(0.05) benign(0.312) TCGA-RD-A7BS-01 9 104314699 104314699 C T RNF20 Missense_Mutation p.S522F 0.17 deleterious(0.01) possibly_damaging(0.485) TCGA-RD-A7BS-01 9 131708693 131708693 C T DOLK Missense_Mutation p.R297H 0.24 deleterious(0) probably_damaging(0.999) TCGA-RD-A7BS-01 9 137582873 137582873 C T COL5A1 Silent p.Y75Y 0.08 TCGA-RD-A7BS-01 9 140357910 140357910 G A PNPLA7 Silent p.D1100D 0.24 TCGA-RD-A7BS-01 9 34371925 34371925 C T KIAA1161 Silent p.Q305Q 0.05 TCGA-RD-A7BS-01 X 11783877 11783877 G A MSL3 Intron 0.12 TCGA-RD-A7BS-01 X 13803803 13803803 G A GPM6B Silent p.T102T 0.19 TCGA-RD-A7BS-01 X 140785824 140785824 C A SPANXD Missense_Mutation p.G31V 0.09 tolerated_low_confidence(0.18) probably_damaging(1) TCGA-RD-A7BS-01 X 37026574 37026574 G A FAM47C Missense_Mutation p.A31T 0.30 tolerated(0.23) benign(0.142) TCGA-RD-A7BS-01 X 55052357 55052357 A C ALAS2 Missense_Mutation p.V26G 0.21 tolerated(0.52) benign(0.077) TCGA-RD-A7BS-01 X 99661593 99661593 G A PCDH19 Missense_Mutation p.A668V 0.19 tolerated(0.1) possibly_damaging(0.65) TCGA-RD-A7BT-01 10 102749120 102749120 G A C10orf2 Missense_Mutation p.E385K 0.48 deleterious(0.01) benign(0.37) TCGA-RD-A7BT-01 10 108377994 108377994 A C SORCS1 Missense_Mutation p.F945V 0.12 deleterious(0) possibly_damaging(0.767) TCGA-RD-A7BT-01 10 27497347 27497347 C G ACBD5 Missense_Mutation p.G411A 0.10 deleterious(0) possibly_damaging(0.894) TCGA-RD-A7BT-01 10 48388115 48388115 G T RBP3 Missense_Mutation p.S921R 0.10 tolerated(0.22) possibly_damaging(0.451) TCGA-RD-A7BT-01 10 79737272 79737272 G A POLR3A Silent p.F1379F 0.14 TCGA-RD-A7BT-01 11 100064359 100064359 C A CNTN5 Missense_Mutation p.F616L 0.15 tolerated(0.18) possibly_damaging(0.824) TCGA-RD-A7BT-01 11 101375273 101375273 T G TRPC6 Missense_Mutation p.N143H 0.44 deleterious(0) probably_damaging(0.999) TCGA-RD-A7BT-01 11 121428044 121428044 T A SORL1 Missense_Mutation p.F865I 0.13 tolerated(0.09) benign(0.005) TCGA-RD-A7BT-01 11 123988104 123988104 T - VWA5A Intron 0.24 TCGA-RD-A7BT-01 11 124134825 124134825 A G OR8G5 Missense_Mutation p.R35G 0.26 deleterious_low_confidence(0.04) benign(0.011) TCGA-RD-A7BT-01 11 128840300 128840300 G A ARHGAP32 Missense_Mutation p.P1589L 0.12 deleterious(0) possibly_damaging(0.564) TCGA-RD-A7BT-01 11 24750807 24750807 T C LUZP2 Missense_Mutation p.L52P 0.12 deleterious(0) probably_damaging(0.998) TCGA-RD-A7BT-01 11 31815215 31815215 G A PAX6 Nonsense_Mutation p.Q315* 0.11 TCGA-RD-A7BT-01 11 4790663 4790663 A G OR51F1 Missense_Mutation p.L162P 0.22 tolerated(0.19) probably_damaging(0.972) TCGA-RD-A7BT-01 11 48346988 48346988 T G OR4C3 Missense_Mutation p.C166G 0.07 deleterious(0) probably_damaging(0.999) TCGA-RD-A7BT-01 11 4929177 4929177 A G OR51A7 Missense_Mutation p.K193R 0.25 tolerated(1) benign(0.006) TCGA-RD-A7BT-01 11 5509993 5509993 G A OR52D1 Silent p.G19G 0.11 TCGA-RD-A7BT-01 11 55110729 55110729 A G OR4A16 Missense_Mutation p.D18G 0.17 deleterious_low_confidence(0.02) possibly_damaging(0.899) TCGA-RD-A7BT-01 11 55110950 55110950 T C OR4A16 Silent p.L92L 0.10 TCGA-RD-A7BT-01 11 5529715 5529715 A C UBQLN3 Silent p.T358T 0.27 TCGA-RD-A7BT-01 11 56258403 56258403 A G OR5M8 Silent p.Y148Y 0.17 TCGA-RD-A7BT-01 11 56258460 56258460 C A OR5M8 Silent p.L129L 0.05 TCGA-RD-A7BT-01 11 58125914 58125914 A C OR5B17 Missense_Mutation p.L210R 0.25 deleterious_low_confidence(0) possibly_damaging(0.796) TCGA-RD-A7BT-01 11 61295432 61295432 G A SYT7 Missense_Mutation p.R268W 0.23 deleterious(0) probably_damaging(0.997) TCGA-RD-A7BT-01 11 65828121 65828121 C T SF3B2 Silent p.I566I 0.17 TCGA-RD-A7BT-01 11 71511620 71511620 G C FAM86C1 3'UTR 0.12 TCGA-RD-A7BT-01 11 73020722 73020722 G A ARHGEF17 Missense_Mutation p.G347S 0.19 deleterious_low_confidence(0.02) benign(0.03) TCGA-RD-A7BT-01 11 84028157 84028157 C G DLG2 Intron 0.11 TCGA-RD-A7BT-01 11 8715599 8715599 T G ST5 3'UTR 0.19 TCGA-RD-A7BT-01 11 88911926 88911926 T G TYR Missense_Mutation p.F269V 0.27 deleterious(0) probably_damaging(0.999) TCGA-RD-A7BT-01 11 92714994 92714994 C T MTNR1B Missense_Mutation p.A202V 0.14 tolerated(0.69) benign(0.004) TCGA-RD-A7BT-01 12 109017479 109017479 T G SELPLG Missense_Mutation p.Q218P 0.32 tolerated(0.26) unknown(0) TCGA-RD-A7BT-01 12 119960742 119960742 A G CCDC60 Splice_Site p.X347_splice 0.17 TCGA-RD-A7BT-01 12 21172239 21172239 A C SLCO1B7 Missense_Mutation p.K48T 0.35 deleterious(0) probably_damaging(0.913) TCGA-RD-A7BT-01 12 48143298 48143298 C T RAPGEF3 Missense_Mutation p.E306K 0.29 deleterious(0) probably_damaging(0.932) TCGA-RD-A7BT-01 12 48272869 48272869 G A VDR Silent p.L60L 0.29 TCGA-RD-A7BT-01 12 52962020 52962020 T A KRT74 Missense_Mutation p.S430C 0.17 deleterious(0) probably_damaging(0.987) TCGA-RD-A7BT-01 12 53448974 53448974 T G TENC1 Missense_Mutation p.F186C 0.23 deleterious(0) possibly_damaging(0.873) TCGA-RD-A7BT-01 12 55420589 55420589 A C NEUROD4 Missense_Mutation p.K122N 0.08 deleterious(0) probably_damaging(1) TCGA-RD-A7BT-01 12 56868376 56868376 G C GLS2 Silent p.L392L 0.11 TCGA-RD-A7BT-01 12 58024985 58024985 C G B4GALNT1 Silent p.S127S 0.15 TCGA-RD-A7BT-01 12 6729980 6729980 C T LPAR5 Silent p.V145V 0.23 TCGA-RD-A7BT-01 12 81111069 81111069 A T MYF5 Missense_Mutation p.K76M 0.17 deleterious(0) probably_damaging(1) TCGA-RD-A7BT-01 13 109535435 109535435 G C MYO16 Missense_Mutation p.G463A 0.08 deleterious(0.02) probably_damaging(0.936) TCGA-RD-A7BT-01 13 109777573 109777573 A C MYO16 Missense_Mutation p.T1195P 0.25 deleterious(0) probably_damaging(0.939) TCGA-RD-A7BT-01 13 20041416 20041416 A C TPTE2 Missense_Mutation p.V154G 0.27 deleterious(0) benign(0.314) TCGA-RD-A7BT-01 13 20279875 20279875 C T PSPC1 Missense_Mutation p.G438D 0.15 deleterious(0) probably_damaging(0.965) TCGA-RD-A7BT-01 13 23911932 23911932 T G SACS Missense_Mutation p.E2028A 0.17 benign(0.156) TCGA-RD-A7BT-01 13 32705857 32705857 G A FRY Silent p.R255R 0.11 TCGA-RD-A7BT-01 13 36141113 36141113 T G NBEA Missense_Mutation p.L2332V 0.21 deleterious(0) possibly_damaging(0.558) TCGA-RD-A7BT-01 13 36445384 36445384 T G DCLK1 Missense_Mutation p.K306T 0.05 deleterious(0.05) possibly_damaging(0.607) TCGA-RD-A7BT-01 13 39338466 39338466 T G FREM2 Missense_Mutation p.N1763K 0.11 tolerated(0.99) benign(0.007) TCGA-RD-A7BT-01 13 78475246 78475246 T A EDNRB Missense_Mutation p.M390L 0.06 tolerated(0.5) benign(0.018) TCGA-RD-A7BT-01 13 84455563 84455563 T G SLITRK1 Missense_Mutation p.K27T 0.11 tolerated(0.17) benign(0.01) TCGA-RD-A7BT-01 14 20586464 20586464 A C OR4K17 Missense_Mutation p.K300T 0.25 deleterious(0) probably_damaging(0.995) TCGA-RD-A7BT-01 14 23511449 23511449 T A PSMB11 Missense_Mutation p.D5E 0.24 tolerated(0.12) benign(0.005) TCGA-RD-A7BT-01 14 47601018 47601018 A C MDGA2 Missense_Mutation p.L275R 0.41 deleterious(0) probably_damaging(0.974) TCGA-RD-A7BT-01 14 54417601 54417601 G C BMP4 Missense_Mutation p.L126V 0.29 tolerated(0.43) benign(0.099) TCGA-RD-A7BT-01 14 55408169 55408169 A T WDHD1 3'UTR 0.32 TCGA-RD-A7BT-01 14 65194627 65194627 A G PLEKHG3 Missense_Mutation p.Y93C 0.25 deleterious(0) probably_damaging(0.999) TCGA-RD-A7BT-01 14 72117055 72117055 A - SIPA1L1 Frame_Shift_Del p.N608Tfs*6 0.39 TCGA-RD-A7BT-01 14 75471487 75471487 T C EIF2B2 Missense_Mutation p.S161P 0.64 deleterious(0) possibly_damaging(0.55) TCGA-RD-A7BT-01 14 77491778 77491778 C G IRF2BPL Silent p.G786G 0.16 TCGA-RD-A7BT-01 14 86089858 86089858 G A FLRT2 3'UTR 0.39 TCGA-RD-A7BT-01 14 89341376 89341376 G A TTC8 Missense_Mutation p.A452T 0.22 tolerated(0.22) probably_damaging(0.987) TCGA-RD-A7BT-01 15 22382668 22382668 T G OR4N4 Missense_Mutation p.L66V 0.08 deleterious(0) probably_damaging(0.997) TCGA-RD-A7BT-01 15 23812089 23812089 T G MKRN3 Missense_Mutation p.L387R 0.26 deleterious(0) probably_damaging(0.998) TCGA-RD-A7BT-01 15 24921894 24921894 A C NPAP1 Missense_Mutation p.I294L 0.28 tolerated(0.32) benign(0.001) TCGA-RD-A7BT-01 15 34393934 34393934 C T EMC7 Missense_Mutation p.G36E 0.14 tolerated(0.89) probably_damaging(0.931) TCGA-RD-A7BT-01 15 56152909 56152909 G A NEDD4 Missense_Mutation p.R595W 0.52 deleterious(0) probably_damaging(0.924) TCGA-RD-A7BT-01 15 65491282 65491282 G A CILP Missense_Mutation p.R448C 0.16 deleterious(0.04) possibly_damaging(0.614) TCGA-RD-A7BT-01 15 88522553 88522553 A C NTRK3 Intron 0.13 TCGA-RD-A7BT-01 15 88726700 88726700 A G NTRK3 Missense_Mutation p.L115P 0.11 deleterious(0) probably_damaging(1) TCGA-RD-A7BT-01 15 89400067 89400067 A C ACAN Missense_Mutation p.E1417D 0.23 tolerated(0.42) possibly_damaging(0.857) TCGA-RD-A7BT-01 16 21053505 21053505 G A DNAH3 Silent p.V1494V 0.37 TCGA-RD-A7BT-01 16 23700896 23700896 G T PLK1 Missense_Mutation p.D503Y 0.13 deleterious(0.05) possibly_damaging(0.671) TCGA-RD-A7BT-01 16 2569258 2569258 G A ATP6V0C Missense_Mutation p.G40D 0.06 deleterious(0.01) benign(0.309) TCGA-RD-A7BT-01 16 28518114 28518114 C T IL27 Missense_Mutation p.D7N 0.08 tolerated_low_confidence(0.15) benign(0.008) TCGA-RD-A7BT-01 16 31383944 31383944 C T ITGAX Silent p.A773A 0.21 TCGA-RD-A7BT-01 16 51175812 51175812 T G SALL1 Missense_Mutation p.Q107H 0.26 tolerated(0.12) benign(0.429) TCGA-RD-A7BT-01 16 74708987 74708987 C T MLKL Missense_Mutation p.E418K 0.14 tolerated(1) benign(0.006) TCGA-RD-A7BT-01 16 76523743 76523743 T C CNTNAP4 Silent p.T608T 0.25 TCGA-RD-A7BT-01 16 86602257 86602257 C G FOXC2 Missense_Mutation p.T439R 0.43 deleterious(0.04) benign(0.183) TCGA-RD-A7BT-01 17 27025005 27025005 C T SUPT6H Missense_Mutation p.P1469S 0.07 deleterious(0) probably_damaging(0.984) TCGA-RD-A7BT-01 17 2996125 2996125 G T OR1D2 Missense_Mutation p.H56N 0.18 deleterious(0) probably_damaging(0.999) TCGA-RD-A7BT-01 17 32582395 32582395 C T CCL2 Silent p.C9C 0.21 TCGA-RD-A7BT-01 17 34624179 34624179 C T CCL3L1 3'UTR 0.10 TCGA-RD-A7BT-01 17 35902333 35902333 T A SYNRG Missense_Mutation p.E981D 0.37 tolerated_low_confidence(0.42) probably_damaging(0.994) TCGA-RD-A7BT-01 17 40618474 40618474 C T ATP6V0A1 Missense_Mutation p.R49W 0.10 deleterious(0) probably_damaging(0.977) TCGA-RD-A7BT-01 17 60060297 60060297 C G MED13 Missense_Mutation p.G1023R 0.14 tolerated(0.13) probably_damaging(0.998) TCGA-RD-A7BT-01 17 65908586 65908586 A G BPTF Missense_Mutation p.N1529S 0.19 benign(0.09) TCGA-RD-A7BT-01 18 12367347 12367347 T C AFG3L2 Silent p.G109G 0.32 TCGA-RD-A7BT-01 18 14848928 14848928 G A ANKRD30B Missense_Mutation p.R1013K 0.30 tolerated(0.09) benign(0.047) TCGA-RD-A7BT-01 18 21181263 21181263 A C ANKRD29 Missense_Mutation p.L278R 0.21 deleterious(0.04) possibly_damaging(0.467) TCGA-RD-A7BT-01 18 30792016 30792016 G T CCDC178 Missense_Mutation p.N694K 0.33 deleterious(0.04) benign(0.228) TCGA-RD-A7BT-01 18 32920214 32920214 A C ZNF24 Missense_Mutation p.L134R 0.29 deleterious(0) probably_damaging(0.928) TCGA-RD-A7BT-01 19 1080282 1080282 A G HMHA1 Missense_Mutation p.S594G 0.12 deleterious(0.02) possibly_damaging(0.498) TCGA-RD-A7BT-01 19 12256046 12256046 C A ZNF625 3'Flank 0.14 TCGA-RD-A7BT-01 19 13192537 13192537 G A NFIX Silent p.T374T 0.24 TCGA-RD-A7BT-01 19 22585671 22585671 T G ZNF98 Missense_Mutation p.K58T 0.30 deleterious(0.01) probably_damaging(0.932) TCGA-RD-A7BT-01 19 33464169 33464169 G A C19orf40 Missense_Mutation p.E23K 0.20 deleterious(0.01) benign(0.09) TCGA-RD-A7BT-01 19 36502347 36502347 G C ALKBH6 Missense_Mutation p.P76R 0.10 deleterious(0) probably_damaging(0.996) TCGA-RD-A7BT-01 19 38057166 38057166 T A ZNF571 Missense_Mutation p.K55M 0.09 deleterious(0.02) benign(0.221) TCGA-RD-A7BT-01 19 38881012 38881012 G A SPRED3 Missense_Mutation p.G24R 0.24 deleterious(0) probably_damaging(0.991) TCGA-RD-A7BT-01 19 39010005 39010005 C T RYR1 Silent p.G3390G 0.20 TCGA-RD-A7BT-01 19 43514194 43514194 C A PSG11 Splice_Site p.X322_splice 0.11 TCGA-RD-A7BT-01 19 48618952 48618952 T C LIG1 Missense_Mutation p.N905S 0.21 deleterious(0.03) possibly_damaging(0.677) TCGA-RD-A7BT-01 19 51728692 51728692 A G CD33 Missense_Mutation p.T86A 0.07 deleterious(0) possibly_damaging(0.79) TCGA-RD-A7BT-01 19 53013963 53013963 T G ZNF578 Missense_Mutation p.I110S 0.10 deleterious(0.02) possibly_damaging(0.743) TCGA-RD-A7BT-01 19 54649673 54649673 C T CNOT3 Missense_Mutation p.P244L 0.12 deleterious(0.05) benign(0.101) TCGA-RD-A7BT-01 19 55451656 55451656 G A NLRP7 Silent p.H177H 0.45 TCGA-RD-A7BT-01 19 57035783 57035783 T G ZNF471 Missense_Mutation p.L116R 0.27 deleterious(0.04) benign(0.06) TCGA-RD-A7BT-01 19 57061922 57061922 A T ZFP28 Missense_Mutation p.Q282H 0.15 tolerated(0.18) benign(0.001) TCGA-RD-A7BT-01 19 57286821 57286821 G T ZIM2 Missense_Mutation p.D273E 0.22 tolerated(0.52) benign(0.023) TCGA-RD-A7BT-01 19 58483855 58483855 G C C19orf18 Missense_Mutation p.P82A 0.14 tolerated(0.25) benign(0.008) TCGA-RD-A7BT-01 19 58490054 58490054 C A ZNF606 Missense_Mutation p.C665F 0.23 tolerated(0.06) probably_damaging(0.991) TCGA-RD-A7BT-01 19 9452564 9452564 T G ZNF559 Missense_Mutation p.L146R 0.39 tolerated(0.33) benign(0.029) TCGA-RD-A7BT-01 19 9492006 9492006 T C ZNF177 Silent p.T333T 0.26 TCGA-RD-A7BT-01 1 103343575 103343575 T G COL11A1 Nonstop_Mutation p.*1807Yext*2 0.19 TCGA-RD-A7BT-01 1 104116967 104116967 T C AMY2B Missense_Mutation p.L277P 0.32 deleterious(0) probably_damaging(1) TCGA-RD-A7BT-01 1 110201636 110201636 T C GSTM4 Silent p.D157D 0.37 TCGA-RD-A7BT-01 1 12837854 12837854 G A PRAMEF12 3'UTR 0.27 TCGA-RD-A7BT-01 1 152382839 152382839 T C CRNN Missense_Mutation p.Q240R 0.25 deleterious(0.01) possibly_damaging(0.835) TCGA-RD-A7BT-01 1 158450616 158450616 G T OR10R2 Missense_Mutation p.V317F 0.16 tolerated(0.12) benign(0.423) TCGA-RD-A7BT-01 1 159410360 159410360 A T OR10J1 Missense_Mutation p.K271M 0.14 deleterious(0.02) possibly_damaging(0.795) TCGA-RD-A7BT-01 1 159410456 159410456 G C OR10J1 Missense_Mutation p.R303T 0.33 deleterious(0) probably_damaging(0.963) TCGA-RD-A7BT-01 1 174987569 174987569 C A MRPS14 Missense_Mutation p.L63F 0.20 deleterious(0) probably_damaging(0.999) TCGA-RD-A7BT-01 1 176915236 176915236 A C ASTN1 Missense_Mutation p.L692R 0.20 tolerated(0.19) benign(0.014) TCGA-RD-A7BT-01 1 179077355 179077355 G C ABL2 Nonsense_Mutation p.S1016* 0.10 TCGA-RD-A7BT-01 1 181767927 181767927 T A CACNA1E Missense_Mutation p.V2300D 0.14 tolerated(0.63) possibly_damaging(0.693) TCGA-RD-A7BT-01 1 190067816 190067816 T G BRINP3 Missense_Mutation p.S545R 0.30 tolerated(0.15) benign(0.024) TCGA-RD-A7BT-01 1 192127860 192127860 A C RGS18 Missense_Mutation p.E31D 0.32 tolerated(0.09) possibly_damaging(0.888) TCGA-RD-A7BT-01 1 198678922 198678922 C T PTPRC Silent p.N380N 0.28 TCGA-RD-A7BT-01 1 203013186 203013186 A C PPFIA4 Missense_Mutation p.K155T 0.40 deleterious(0.02) probably_damaging(0.999) TCGA-RD-A7BT-01 1 203669980 203669980 A C ATP2B4 Missense_Mutation p.N277T 0.32 deleterious(0.01) possibly_damaging(0.898) TCGA-RD-A7BT-01 1 211192300 211192300 A G KCNH1 Missense_Mutation p.L286P 0.36 deleterious(0.01) probably_damaging(0.986) TCGA-RD-A7BT-01 1 216373317 216373317 T G USH2A Missense_Mutation p.S1155R 0.28 benign(0.392) TCGA-RD-A7BT-01 1 23376959 23376959 T G KDM1A Missense_Mutation p.I219M 0.15 deleterious(0) probably_damaging(0.995) TCGA-RD-A7BT-01 1 238045830 238045830 T G ZP4 Missense_Mutation p.K505N 0.25 tolerated(0.52) benign(0.07) TCGA-RD-A7BT-01 1 24787032 24787032 G A NIPAL3 Silent p.L308L 0.33 TCGA-RD-A7BT-01 1 248059040 248059040 T G OR2W3 Missense_Mutation p.L51R 0.25 deleterious(0.01) possibly_damaging(0.781) TCGA-RD-A7BT-01 1 248436942 248436942 A C OR2T33 Missense_Mutation p.F59V 0.17 deleterious(0.01) benign(0.071) TCGA-RD-A7BT-01 1 248512207 248512207 T G OR14C36 Missense_Mutation p.V44G 0.31 deleterious(0) possibly_damaging(0.703) TCGA-RD-A7BT-01 1 248636823 248636823 C A OR2T3 Missense_Mutation p.P58T 0.16 tolerated(0.39) benign(0.186) TCGA-RD-A7BT-01 1 248737887 248737887 G T OR2T34 Missense_Mutation p.P58T 0.10 tolerated(0.41) benign(0.186) TCGA-RD-A7BT-01 1 26691179 26691179 C A ZNF683 Silent p.L286L 0.19 TCGA-RD-A7BT-01 1 38005986 38005986 A G SNIP1 Missense_Mutation p.L233P 0.14 tolerated(0.09) possibly_damaging(0.76) TCGA-RD-A7BT-01 1 42045768 42045768 A C HIVEP3 Silent p.P1567P 0.15 TCGA-RD-A7BT-01 1 42896295 42896295 G A ZMYND12 3'UTR 0.11 TCGA-RD-A7BT-01 1 6278375 6278375 C G RNF207 Nonsense_Mutation p.S560* 0.28 TCGA-RD-A7BT-01 1 63070426 63070426 T C ANGPTL3 Silent p.L441L 0.14 TCGA-RD-A7BT-01 1 6536054 6536054 G A PLEKHG5 Missense_Mutation p.P108L 0.17 deleterious(0) probably_damaging(0.994) TCGA-RD-A7BT-01 1 66075940 66075940 T C LEPR Silent p.D652D 0.34 TCGA-RD-A7BT-01 1 68895485 68895485 A C RPE65 Missense_Mutation p.F526V 0.12 deleterious(0) possibly_damaging(0.794) TCGA-RD-A7BT-01 1 95363372 95363372 C T CNN3 Missense_Mutation p.D306N 0.23 deleterious_low_confidence(0.05) benign(0.439) TCGA-RD-A7BT-01 1 97278449 97278451 TCC - PTBP2 In_Frame_Del p.P453del 0.11 TCGA-RD-A7BT-01 20 13279747 13279747 T G ISM1 Missense_Mutation p.F346V 0.33 deleterious(0.02) probably_damaging(0.93) TCGA-RD-A7BT-01 20 62737562 62737562 C G NPBWR2 Missense_Mutation p.W208S 0.28 deleterious(0) possibly_damaging(0.864) TCGA-RD-A7BT-01 21 41450790 41450790 T G DSCAM Missense_Mutation p.E1512A 0.29 deleterious(0) possibly_damaging(0.845) TCGA-RD-A7BT-01 21 46066461 46066461 C T KRTAP10-11 Missense_Mutation p.P29L 0.14 deleterious(0.01) unknown(0) TCGA-RD-A7BT-01 22 16449566 16449566 T G OR11H1 Missense_Mutation p.N80T 0.20 deleterious(0) probably_damaging(1) TCGA-RD-A7BT-01 22 36537519 36537519 C T APOL3 Missense_Mutation p.R313Q 0.14 tolerated(0.15) benign(0.001) TCGA-RD-A7BT-01 22 39709871 39709871 C T RPL3 Intron 0.17 TCGA-RD-A7BT-01 22 40037181 40037181 C A CACNA1I Silent p.I350I 0.24 TCGA-RD-A7BT-01 2 100199324 100199324 G C AFF3 Nonsense_Mutation p.S935* 0.12 TCGA-RD-A7BT-01 2 11355523 11355523 T A ROCK2 Missense_Mutation p.D538V 0.23 deleterious(0.04) possibly_damaging(0.589) TCGA-RD-A7BT-01 2 11729005 11729005 C T GREB1 Silent p.P431P 0.34 TCGA-RD-A7BT-01 2 138378192 138378192 A C THSD7B Missense_Mutation p.K1235T 0.21 deleterious(0.02) unknown(0) TCGA-RD-A7BT-01 2 141130589 141130589 T G LRP1B Missense_Mutation p.S3586R 0.27 benign(0.001) TCGA-RD-A7BT-01 2 145156242 145156242 T G ZEB2 Missense_Mutation p.K838Q 0.17 deleterious(0.03) possibly_damaging(0.879) TCGA-RD-A7BT-01 2 160628362 160628362 T G LY75 Nonstop_Mutation p.*1874Yext*? 0.29 TCGA-RD-A7BT-01 2 166605312 166605312 C A GALNT3 Missense_Mutation p.W627C 0.23 deleterious(0) probably_damaging(0.999) TCGA-RD-A7BT-01 2 167134735 167134735 A T SCN9A Missense_Mutation p.F800Y 0.18 deleterious(0.03) benign(0.097) TCGA-RD-A7BT-01 2 179423360 179423360 T G TTN Missense_Mutation p.K28942N 0.24 TCGA-RD-A7BT-01 2 179484726 179484726 A C TTN Missense_Mutation p.L15473R 0.15 TCGA-RD-A7BT-01 2 179595869 179595869 A C TTN Silent p.T5841T 0.08 TCGA-RD-A7BT-01 2 179641249 179641249 T G TTN Missense_Mutation p.N1781T 0.14 TCGA-RD-A7BT-01 2 183960247 183960247 C T DUSP19 Missense_Mutation p.S172L 0.12 deleterious(0.02) benign(0.2) TCGA-RD-A7BT-01 2 191551937 191551937 T G NAB1 Silent p.P423P 0.10 TCGA-RD-A7BT-01 2 207527965 207527965 T G DYTN Missense_Mutation p.K432T 0.25 tolerated(0.27) benign(0) TCGA-RD-A7BT-01 2 220408082 220408082 C T CHPF Missense_Mutation p.R60H 0.25 deleterious(0.02) possibly_damaging(0.582) TCGA-RD-A7BT-01 2 224463855 224463855 T G SCG2 Missense_Mutation p.K49T 0.13 tolerated(0.13) benign(0.049) TCGA-RD-A7BT-01 2 225717731 225717731 C T DOCK10 Missense_Mutation p.R666Q 0.24 tolerated(0.86) benign(0.003) TCGA-RD-A7BT-01 2 239306265 239306265 C A TRAF3IP1 Missense_Mutation p.Q619K 0.29 deleterious(0.05) possibly_damaging(0.593) TCGA-RD-A7BT-01 2 27684324 27684324 G T IFT172 Missense_Mutation p.Q752K 0.15 deleterious(0) probably_damaging(0.99) TCGA-RD-A7BT-01 3 111985082 111985082 T G SLC9C1 Intron 0.14 TCGA-RD-A7BT-01 3 120365162 120365162 A C HGD Missense_Mutation p.L201V 0.27 deleterious(0.04) possibly_damaging(0.594) TCGA-RD-A7BT-01 3 14508104 14508104 C T SLC6A6 Silent p.G271G 0.05 TCGA-RD-A7BT-01 3 157841666 157841666 G C RSRC1 Missense_Mutation p.R69P 0.43 deleterious_low_confidence(0) unknown(0) TCGA-RD-A7BT-01 3 165491121 165491121 T G BCHE 3'UTR 0.44 TCGA-RD-A7BT-01 3 195925162 195925162 A G ZDHHC19 3'UTR 0.15 TCGA-RD-A7BT-01 3 33194233 33194233 C T SUSD5 3'UTR 0.16 TCGA-RD-A7BT-01 3 35835229 35835229 C G ARPP21 Missense_Mutation p.Q741E 0.14 deleterious(0) possibly_damaging(0.607) TCGA-RD-A7BT-01 3 38051232 38051232 C T PLCD1 Missense_Mutation p.G474D 0.23 tolerated(0.61) benign(0.001) TCGA-RD-A7BT-01 3 38913121 38913121 A C SCN11A Missense_Mutation p.F1192V 0.40 deleterious(0) probably_damaging(1) TCGA-RD-A7BT-01 3 42240698 42240698 G A TRAK1 Silent p.T381T 0.15 TCGA-RD-A7BT-01 3 46307116 46307116 T G CCR3 Missense_Mutation p.V177G 0.13 deleterious(0.02) benign(0.042) TCGA-RD-A7BT-01 3 46307118 46307118 A C CCR3 Missense_Mutation p.T178P 0.13 deleterious(0) probably_damaging(0.975) TCGA-RD-A7BT-01 3 69987080 69987080 A C MITF Missense_Mutation p.Q154H 0.53 tolerated(0.28) probably_damaging(0.987) TCGA-RD-A7BT-01 3 74411155 74411155 T G CNTN3 Missense_Mutation p.K417T 0.30 tolerated(0.06) benign(0.012) TCGA-RD-A7BT-01 3 78734932 78734932 T G ROBO1 Missense_Mutation p.S436R 0.22 deleterious(0) probably_damaging(0.998) TCGA-RD-A7BT-01 3 8671409 8671409 A T SSUH2 Missense_Mutation p.C177S 0.19 deleterious(0) probably_damaging(0.977) TCGA-RD-A7BT-01 3 98507289 98507289 A C ST3GAL6 Missense_Mutation p.K246N 0.11 tolerated(0.34) benign(0.102) TCGA-RD-A7BT-01 4 106155509 106155509 G C TET2 Missense_Mutation p.S137T 0.17 deleterious(0.02) benign(0.218) TCGA-RD-A7BT-01 4 114274810 114274810 G C ANK2 Missense_Mutation p.G1679A 0.28 benign(0.011) TCGA-RD-A7BT-01 4 114275318 114275318 A C ANK2 Silent p.S1848S 0.36 TCGA-RD-A7BT-01 4 126412593 126412593 A C FAT4 Missense_Mutation p.Q4872H 0.33 probably_damaging(0.993) TCGA-RD-A7BT-01 4 151023935 151023935 A G DCLK2 Missense_Mutation p.K243E 0.60 deleterious(0) possibly_damaging(0.769) TCGA-RD-A7BT-01 4 156136045 156136045 T G NPY2R Silent p.T318T 0.20 TCGA-RD-A7BT-01 4 156849531 156849531 T C CTSO Silent p.G296G 0.35 TCGA-RD-A7BT-01 4 20715162 20715162 C A PACRGL Missense_Mutation p.S203R 0.07 tolerated(0.12) possibly_damaging(0.465) TCGA-RD-A7BT-01 4 3006017 3006017 G C GRK4 Silent p.L133L 0.28 TCGA-RD-A7BT-01 4 40104441 40104441 T G N4BP2 Missense_Mutation p.F326V 0.25 tolerated(0.05) probably_damaging(0.998) TCGA-RD-A7BT-01 5 101748764 101748764 C G SLCO6A1 Missense_Mutation p.R519T 0.47 deleterious(0) probably_damaging(0.995) TCGA-RD-A7BT-01 5 1242923 1242923 A C SLC6A18 Missense_Mutation p.K359T 0.09 tolerated(0.37) benign(0.158) TCGA-RD-A7BT-01 5 132535260 132535260 C T FSTL4 Missense_Mutation p.G686S 0.51 tolerated(0.62) benign(0.008) TCGA-RD-A7BT-01 5 140811804 140811804 A C PCDHGA12 Missense_Mutation p.E493A 0.47 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-RD-A7BT-01 5 143586831 143586831 A G KCTD16 Missense_Mutation p.K185R 0.60 deleterious(0.04) probably_damaging(0.989) TCGA-RD-A7BT-01 5 169468062 169468062 C G DOCK2 Nonsense_Mutation p.Y1223* 0.27 TCGA-RD-A7BT-01 5 19473296 19473296 T C CDH18 3'UTR 0.17 TCGA-RD-A7BT-01 5 26915859 26915859 T G CDH9 Missense_Mutation p.K134N 0.24 tolerated(0.67) possibly_damaging(0.628) TCGA-RD-A7BT-01 5 36976423 36976423 G A NIPBL Missense_Mutation p.D472N 0.17 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-RD-A7BT-01 5 38499648 38499648 A C LIFR Missense_Mutation p.S546R 0.23 tolerated(0.1) benign(0.013) TCGA-RD-A7BT-01 5 79030206 79030206 A G CMYA5 Missense_Mutation p.K1873R 0.16 benign(0.037) TCGA-RD-A7BT-01 6 139234026 139234026 G A REPS1 Missense_Mutation p.T615I 0.27 tolerated(0.14) probably_damaging(0.999) TCGA-RD-A7BT-01 6 151331065 151331065 G C MTHFD1L Missense_Mutation p.A746P 0.11 deleterious(0) probably_damaging(0.998) TCGA-RD-A7BT-01 6 152542125 152542125 A C SYNE1 Missense_Mutation p.L7238R 0.09 possibly_damaging(0.775) TCGA-RD-A7BT-01 6 24475365 24475365 A C GPLD1 Missense_Mutation p.L142R 0.24 deleterious(0) probably_damaging(0.99) TCGA-RD-A7BT-01 6 24596437 24596437 C T KIAA0319 Silent p.E155E 0.17 TCGA-RD-A7BT-01 6 25862490 25862490 T G SLC17A3 Missense_Mutation p.S92R 0.20 deleterious(0.02) benign(0.094) TCGA-RD-A7BT-01 6 28265715 28265715 A G PGBD1 Silent p.Q272Q 0.27 TCGA-RD-A7BT-01 6 37342398 37342398 T C RNF8 Silent p.H347H 0.41 TCGA-RD-A7BT-01 6 38754674 38754674 A C DNAH8 Silent p.A626A 0.25 TCGA-RD-A7BT-01 6 38828369 38828369 G T DNAH8 Missense_Mutation p.C1815F 0.09 probably_damaging(1) TCGA-RD-A7BT-01 6 39864668 39864668 T G DAAM2 Missense_Mutation p.F808V 0.32 tolerated(0.05) benign(0.243) TCGA-RD-A7BT-01 6 46660845 46660845 A C TDRD6 Missense_Mutation p.E1660D 0.27 tolerated(0.53) benign(0.049) TCGA-RD-A7BT-01 6 46684165 46684165 A C PLA2G7 Missense_Mutation p.L111R 0.15 deleterious(0) probably_damaging(0.966) TCGA-RD-A7BT-01 6 50805705 50805705 G A TFAP2B Missense_Mutation p.G280E 0.19 deleterious(0) probably_damaging(0.997) TCGA-RD-A7BT-01 6 56044591 56044591 A C COL21A1 Missense_Mutation p.L142R 0.19 deleterious(0) probably_damaging(0.996) TCGA-RD-A7BT-01 6 70961827 70961827 A C COL9A1 Missense_Mutation p.L623R 0.13 probably_damaging(0.951) TCGA-RD-A7BT-01 6 74073316 74073316 G A KHDC3L Silent p.Q129Q 0.12 TCGA-RD-A7BT-01 7 111517196 111517196 A C DOCK4 Missense_Mutation p.L545R 0.29 deleterious(0) possibly_damaging(0.698) TCGA-RD-A7BT-01 7 113519443 113519443 T G PPP1R3A Missense_Mutation p.E568D 0.16 deleterious(0.01) benign(0.034) TCGA-RD-A7BT-01 7 113519986 113519986 A G PPP1R3A Silent p.D387D 0.30 TCGA-RD-A7BT-01 7 126086390 126086390 T C GRM8 Missense_Mutation p.S823G 0.31 deleterious(0.03) benign(0.052) TCGA-RD-A7BT-01 7 128475377 128475377 C T FLNC Intron 0.41 TCGA-RD-A7BT-01 7 1484296 1484296 C T MICALL2 Silent p.A470A 0.14 TCGA-RD-A7BT-01 7 149481149 149481149 C T SSPO RNA 0.35 TCGA-RD-A7BT-01 7 149485458 149485459 - C SSPO RNA 0.26 TCGA-RD-A7BT-01 7 150873302 150873302 C T ASB10 Missense_Mutation p.R434H 0.14 deleterious(0) probably_damaging(0.991) TCGA-RD-A7BT-01 7 21675579 21675579 T C DNAH11 Silent p.L1536L 0.32 TCGA-RD-A7BT-01 7 31918791 31918791 C T PDE1C Silent p.R141R 0.19 TCGA-RD-A7BT-01 7 48375057 48375057 T G ABCA13 Silent p.T3346T 0.15 TCGA-RD-A7BT-01 7 53103843 53103843 C A POM121L12 Missense_Mutation p.P160H 0.13 tolerated(0.54) probably_damaging(0.979) TCGA-RD-A7BT-01 7 55220325 55220325 G A EGFR Missense_Mutation p.G239S 0.09 deleterious(0) probably_damaging(1) TCGA-RD-A7BT-01 7 82546096 82546096 T G PCLO Missense_Mutation p.T3736P 0.07 unknown(0) TCGA-RD-A7BT-01 7 82582532 82582532 A C PCLO Silent p.T2579T 0.09 TCGA-RD-A7BT-01 7 92733226 92733226 T G SAMD9 Missense_Mutation p.S729R 0.19 tolerated(0.37) possibly_damaging(0.548) TCGA-RD-A7BT-01 7 93540115 93540115 G C GNGT1 Missense_Mutation p.C37S 0.09 tolerated(0.85) benign(0.017) TCGA-RD-A7BT-01 7 94944740 94944740 C T PON1 Missense_Mutation p.M88I 0.24 tolerated(0.12) benign(0.06) TCGA-RD-A7BT-01 8 113277783 113277783 C A CSMD3 Missense_Mutation p.G3182V 0.18 deleterious(0) probably_damaging(0.932) TCGA-RD-A7BT-01 8 119941046 119941046 G C TNFRSF11B Missense_Mutation p.Q175E 0.15 tolerated(0.53) benign(0.013) TCGA-RD-A7BT-01 8 144681750 144681750 G A TIGD5 Silent p.P559P 0.43 TCGA-RD-A7BT-01 8 145979604 145979604 C G ZNF251 Missense_Mutation p.E46Q 0.48 deleterious(0) possibly_damaging(0.728) TCGA-RD-A7BT-01 8 23057399 23057399 C T TNFRSF10A Silent p.R277R 0.10 TCGA-RD-A7BT-01 8 42045017 42045017 G A PLAT Silent p.A146A 0.15 TCGA-RD-A7BT-01 8 67067892 67067892 T G TRIM55 Intron 0.25 TCGA-RD-A7BT-01 8 69028132 69028132 T C PREX2 Silent p.S1097S 0.33 TCGA-RD-A7BT-01 8 77767093 77767093 A T ZFHX4 Nonsense_Mutation p.K2646* 0.54 TCGA-RD-A7BT-01 8 87591013 87591013 T G CNGB3 Missense_Mutation p.K669N 0.38 deleterious(0.02) possibly_damaging(0.54) TCGA-RD-A7BT-01 9 107379910 107379910 G A OR13C9 Silent p.I192I 0.08 TCGA-RD-A7BT-01 9 117092225 117092225 C G ORM2 Missense_Mutation p.P14R 0.11 deleterious(0) unknown(0) TCGA-RD-A7BT-01 9 130707126 130707126 C A FAM102A Silent p.R323R 0.18 TCGA-RD-A7BT-01 9 135932234 135932234 C T GTF3C5 Silent p.S451S 0.19 TCGA-RD-A7BT-01 9 32542999 32543002 CTCA - TOPORS Frame_Shift_Del p.Y507* 0.36 TCGA-RD-A7BT-01 9 38068576 38068576 G A SHB Missense_Mutation p.P23S 0.35 deleterious(0) probably_damaging(0.959) TCGA-RD-A7BT-01 X 105178266 105178266 A C NRK Missense_Mutation p.N1111T 0.37 tolerated(0.33) benign(0.003) TCGA-RD-A7BT-01 X 105450190 105450190 A G MUM1L1 Silent p.K255K 0.21 TCGA-RD-A7BT-01 X 111195328 111195328 T G TRPC5 Missense_Mutation p.E107D 0.37 deleterious(0.02) probably_damaging(0.957) TCGA-RD-A7BT-01 X 140996330 140996330 T G MAGEC1 Missense_Mutation p.V1047G 0.24 tolerated(0.05) unknown(0) TCGA-RD-A7BT-01 X 155003517 155003518 - A SPRY3 5'UTR 0.16 TCGA-RD-A7BT-01 X 17744831 17744831 G A NHS Missense_Mutation p.E848K 0.21 deleterious(0.02) probably_damaging(0.993) TCGA-RD-A7BT-01 X 19983249 19983249 A C CXorf23 Missense_Mutation p.L396R 0.22 tolerated(0.22) benign(0.02) TCGA-RD-A7BT-01 X 31515002 31515002 A C DMD Missense_Mutation p.L2817R 0.56 possibly_damaging(0.883) TCGA-RD-A7BT-01 X 3227908 3227908 A T MXRA5 Missense_Mutation p.V2779D 0.26 deleterious(0) benign(0.348) TCGA-RD-A7BT-01 X 37029016 37029016 C T FAM47C Missense_Mutation p.R845C 0.42 tolerated(0.13) benign(0.01) TCGA-RD-A7BT-01 X 50377495 50377495 T G SHROOM4 Missense_Mutation p.Q526H 0.49 tolerated(0.06) possibly_damaging(0.526) TCGA-RD-A7BT-01 X 71349592 71349592 G C RGAG4 3'UTR 0.67 TCGA-RD-A7BT-01 X 77913702 77913702 T C ZCCHC5 Silent p.A72A 0.57 TCGA-RD-A7BW-01 10 103587926 103587926 G A KCNIP2 Silent p.D208D 0.13 TCGA-RD-A7BW-01 10 32863356 32863356 G T C10ORF68 Intron 0.10 TCGA-RD-A7BW-01 10 4879677 4879677 G A AKR1E2 Silent p.G162G 0.06 TCGA-RD-A7BW-01 10 97920304 97920304 C T ZNF518A RNA 0.11 TCGA-RD-A7BW-01 11 1016417 1016417 G C MUC6 Silent p.S2128S 0.10 TCGA-RD-A7BW-01 11 1018736 1018742 CGTTGTT - MUC6 Frame_Shift_Del p.T1354Pfs*100 0.13 TCGA-RD-A7BW-01 11 36596999 36596999 G C RAG1 Silent p.V715V 0.09 TCGA-RD-A7BW-01 11 36615233 36615233 C T RAG2 Missense_Mutation p.M162I 0.04 tolerated(0.37) benign(0.002) TCGA-RD-A7BW-01 11 376088 376088 C T B4GALNT4 Silent p.F370F 0.14 TCGA-RD-A7BW-01 11 78381482 78381482 G A TENM4 Missense_Mutation p.R1970C 0.13 tolerated(0.1) probably_damaging(0.981) TCGA-RD-A7BW-01 11 93517701 93517701 C T MED17 Missense_Mutation p.R8W 0.08 deleterious(0.02) probably_damaging(0.981) TCGA-RD-A7BW-01 12 50499447 50499447 C T GPD1 Silent p.N112N 0.06 TCGA-RD-A7BW-01 12 54792385 54792385 C T ITGA5 Missense_Mutation p.R980H 0.14 tolerated(0.55) benign(0) TCGA-RD-A7BW-01 12 7261175 7261175 C T C1RL Intron 0.16 TCGA-RD-A7BW-01 12 93210150 93210150 C G EEA1 Missense_Mutation p.K585N 0.05 deleterious(0) probably_damaging(0.999) TCGA-RD-A7BW-01 13 100172328 100172328 C A TM9SF2 Missense_Mutation p.S93Y 0.08 tolerated(0.07) probably_damaging(0.988) TCGA-RD-A7BW-01 13 37453860 37453860 A C SMAD9 5'UTR 0.06 TCGA-RD-A7BW-01 13 44458068 44458068 C T LACC1 Silent p.H301H 0.12 TCGA-RD-A7BW-01 14 45658513 45658513 T G FANCM Missense_Mutation p.F1763C 0.06 tolerated(0.27) benign(0.004) TCGA-RD-A7BW-01 14 74425847 74425847 T C ENTPD5 3'Flank 0.08 TCGA-RD-A7BW-01 14 99976738 99976738 G T CCNK Missense_Mutation p.E454D 0.33 tolerated_low_confidence(0.29) unknown(0) TCGA-RD-A7BW-01 15 33261489 33261489 C T FMN1 Missense_Mutation p.V582I 0.04 tolerated(1) unknown(0) TCGA-RD-A7BW-01 15 74631601 74631601 G A CYP11A1 Nonsense_Mutation p.R405* 0.12 TCGA-RD-A7BW-01 16 2763600 2763600 T C PRSS27 Missense_Mutation p.Y203C 0.10 tolerated(0.16) benign(0.202) TCGA-RD-A7BW-01 17 10426500 10426500 C T MYH2 Silent p.T1860T 0.09 TCGA-RD-A7BW-01 17 11650936 11650936 A T DNAH9 Missense_Mutation p.T2155S 0.09 benign(0.1) TCGA-RD-A7BW-01 17 40312390 40312390 G C KCNH4 Missense_Mutation p.L908V 0.11 tolerated(0.14) probably_damaging(0.996) TCGA-RD-A7BW-01 17 60028345 60028345 A G MED13 Silent p.D2044D 0.06 TCGA-RD-A7BW-01 17 60813407 60813407 G T MARCH10 Missense_Mutation p.H608N 0.07 tolerated(0.05) benign(0) TCGA-RD-A7BW-01 17 61908692 61908692 C T PSMC5 Silent p.I292I 0.06 TCGA-RD-A7BW-01 17 62045633 62045633 G T SCN4A Missense_Mutation p.S262R 0.09 deleterious(0) probably_damaging(0.947) TCGA-RD-A7BW-01 17 64492399 64492399 G A PRKCA Missense_Mutation p.D96N 0.10 deleterious(0.05) benign(0.078) TCGA-RD-A7BW-01 17 67101605 67101605 G A ABCA6 Missense_Mutation p.T913I 0.08 deleterious(0) probably_damaging(1) TCGA-RD-A7BW-01 17 79663723 79663723 G A HGS Silent p.K551K 0.18 TCGA-RD-A7BW-01 18 12720616 12720616 T C PSMG2 Missense_Mutation p.I172T 0.20 tolerated(0.08) benign(0.009) TCGA-RD-A7BW-01 18 5416252 5416252 C T EPB41L3 Silent p.P544P 0.05 TCGA-RD-A7BW-01 19 44008156 44008156 C G PHLDB3 Missense_Mutation p.E39Q 0.05 deleterious_low_confidence(0.05) benign(0.017) TCGA-RD-A7BW-01 19 52569052 52569052 T C ZNF841 Missense_Mutation p.K695E 0.09 tolerated(1) benign(0.369) TCGA-RD-A7BW-01 19 53270996 53270996 C A ZNF600 Missense_Mutation p.V5F 0.08 tolerated(0.78) benign(0.002) TCGA-RD-A7BW-01 19 57036484 57036484 G A ZNF471 Missense_Mutation p.E350K 0.08 tolerated(0.06) probably_damaging(0.991) TCGA-RD-A7BW-01 19 6697435 6697435 C T C3 Missense_Mutation p.G906S 0.06 deleterious(0) probably_damaging(0.94) TCGA-RD-A7BW-01 19 686959 686959 C G PRSS57 Missense_Mutation p.R204P 0.08 tolerated(0.22) possibly_damaging(0.613) TCGA-RD-A7BW-01 1 104118116 104118116 G A AMY2B Missense_Mutation p.R352Q 0.08 tolerated(0.07) probably_damaging(0.959) TCGA-RD-A7BW-01 1 110906381 110906381 C G SLC16A4 3'UTR 0.06 TCGA-RD-A7BW-01 1 120165477 120165477 C T ZNF697 Missense_Mutation p.E497K 0.10 deleterious(0.02) probably_damaging(0.996) TCGA-RD-A7BW-01 1 159283838 159283838 G A OR10J3 Silent p.S204S 0.04 TCGA-RD-A7BW-01 1 160283777 160283777 T A COPA Intron 0.09 TCGA-RD-A7BW-01 1 204588474 204588474 C T LRRN2 Missense_Mutation p.R216H 0.08 tolerated(0.14) probably_damaging(0.997) TCGA-RD-A7BW-01 1 233394772 233394772 T C PCNXL2 Missense_Mutation p.E279G 0.06 deleterious_low_confidence(0) possibly_damaging(0.804) TCGA-RD-A7BW-01 1 92182211 92182211 C A TGFBR3 Nonsense_Mutation p.E541* 0.08 TCGA-RD-A7BW-01 20 23966510 23966510 C A GGTLC1 Missense_Mutation p.A136S 0.07 tolerated(0.35) benign(0.079) TCGA-RD-A7BW-01 21 19704477 19704477 T C TMPRSS15 Silent p.G526G 0.09 TCGA-RD-A7BW-01 22 37770349 37770349 A G ELFN2 Missense_Mutation p.V409A 0.11 deleterious(0) possibly_damaging(0.849) TCGA-RD-A7BW-01 2 107460329 107460329 G A ST6GAL2 Silent p.P35P 0.09 TCGA-RD-A7BW-01 2 198257052 198257052 C T SF3B1 Missense_Mutation p.R1297H 0.06 deleterious(0) probably_damaging(0.996) TCGA-RD-A7BW-01 2 208725835 208725835 G C PLEKHM3 Missense_Mutation p.T701R 0.04 deleterious(0) probably_damaging(1) TCGA-RD-A7BW-01 2 216251516 216251516 G A FN1 Missense_Mutation p.S1503F 0.09 tolerated(0.24) probably_damaging(1) TCGA-RD-A7BW-01 2 67637206 67637206 G A ETAA1 3'UTR 0.06 TCGA-RD-A7BW-01 2 70188256 70188256 C A ASPRV1 Missense_Mutation p.A189S 0.05 deleterious(0.02) probably_damaging(0.989) TCGA-RD-A7BW-01 2 89265954 89265954 G A IGKV1-6 Nonsense_Mutation p.Q60* 0.06 TCGA-RD-A7BW-01 3 154802082 154802082 T A MME Silent p.A42A 0.05 TCGA-RD-A7BW-01 3 30715613 30715613 A G TGFBR2 Missense_Mutation p.Y449C 0.08 deleterious(0) probably_damaging(1) TCGA-RD-A7BW-01 3 45812743 45812743 T G SLC6A20 Missense_Mutation p.K301Q 0.16 deleterious(0) probably_damaging(0.988) TCGA-RD-A7BW-01 3 46008078 46008078 G A FYCO1 Silent p.T916T 0.10 TCGA-RD-A7BW-01 5 113740271 113740271 G A KCNN2 Missense_Mutation p.R240Q 0.12 tolerated(0.05) possibly_damaging(0.894) TCGA-RD-A7BW-01 5 122343504 122343504 A G SNX24 3'UTR 0.11 TCGA-RD-A7BW-01 5 140616343 140616343 G T PCDHB18 RNA 0.05 TCGA-RD-A7BW-01 5 178358966 178358966 G C ZFP2 Missense_Mutation p.E218Q 0.06 tolerated(0.41) possibly_damaging(0.748) TCGA-RD-A7BW-01 5 26906901 26906901 G T CDH9 Missense_Mutation p.N190K 0.09 deleterious(0.03) benign(0.272) TCGA-RD-A7BW-01 5 78587100 78587100 G A JMY Missense_Mutation p.R502Q 0.08 deleterious(0.03) benign(0.368) TCGA-RD-A7BW-01 5 95255186 95255186 T C ELL2 Missense_Mutation p.N87D 0.08 deleterious(0.02) possibly_damaging(0.511) TCGA-RD-A7BW-01 6 159262724 159262724 C A OSTCP1 RNA 0.06 TCGA-RD-A7BW-01 6 26158852 26158852 G C HIST1H2BD Intron 0.08 TCGA-RD-A7BW-01 6 40400557 40400557 A G LRFN2 Missense_Mutation p.L99P 0.09 deleterious(0) probably_damaging(1) TCGA-RD-A7BW-01 6 46826342 46826342 C T GPR116 Missense_Mutation p.V1100I 0.09 deleterious(0.01) possibly_damaging(0.658) TCGA-RD-A7BW-01 6 56911528 56911529 GT - KIAA1586 5'UTR 0.17 TCGA-RD-A7BW-01 7 100685182 100685182 C G MUC17 Silent p.T3495T 0.10 TCGA-RD-A7BW-01 7 54612476 54612476 G A VSTM2A Missense_Mutation p.A81T 0.12 tolerated(0.79) benign(0.007) TCGA-RD-A7BW-01 7 70231160 70231160 G A AUTS2 Missense_Mutation p.R510H 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-RD-A7BW-01 8 133196524 133196524 G A KCNQ3 Nonsense_Mutation p.R190* 0.11 TCGA-RD-A7BW-01 8 142222339 142222339 G A SLC45A4 Missense_Mutation p.T702M 0.10 deleterious_low_confidence(0) possibly_damaging(0.541) TCGA-RD-A7BW-01 8 77616425 77616425 A C ZFHX4 Missense_Mutation p.K34N 0.19 possibly_damaging(0.607) TCGA-RD-A7BW-01 8 77765710 77765710 C T ZFHX4 Nonsense_Mutation p.R2185* 0.10 TCGA-RD-A7BW-01 8 86572372 86572372 C A REXO1L1P 3'UTR 0.15 TCGA-RD-A7BW-01 9 117803338 117803338 G A TNC Silent p.D1758D 0.07 TCGA-RD-A7BW-01 9 139741274 139741274 G C C9orf172 Missense_Mutation p.G803A 0.19 tolerated(0.07) probably_damaging(0.991) TCGA-RD-A7BW-01 9 26961993 26961993 G A IFT74 Missense_Mutation p.A10T 0.08 tolerated(0.07) benign(0.003) TCGA-RD-A7BW-01 9 35725613 35725613 C T TLN1 Missense_Mutation p.D27N 0.10 deleterious(0) probably_damaging(0.981) TCGA-RD-A7BW-01 X 118893487 118893487 C A SOWAHD Nonsense_Mutation p.S286* 0.11 TCGA-RD-A7BW-01 X 125685392 125685392 C T DCAF12L1 Silent p.R400R 0.07 TCGA-RD-A7BW-01 X 26212038 26212038 C T MAGEB6 Silent p.L25L 0.09 TCGA-RD-A7BW-01 X 5811186 5811186 T C NLGN4X Missense_Mutation p.H708R 0.10 tolerated(0.32) benign(0.054) TCGA-RD-A7C1-01 10 101295002 101295002 C T NKX2-3 Missense_Mutation p.R207W 0.23 deleterious(0) probably_damaging(0.975) TCGA-RD-A7C1-01 10 102089753 102089753 T C PKD2L1 Silent p.R36R 0.26 TCGA-RD-A7C1-01 10 127462501 127462501 G A MMP21 Missense_Mutation p.A199V 0.22 deleterious(0.01) benign(0.37) TCGA-RD-A7C1-01 10 1284314 1284314 T A ADARB2 Missense_Mutation p.K414M 0.56 deleterious(0) probably_damaging(1) TCGA-RD-A7C1-01 10 131636204 131636204 G A EBF3 Missense_Mutation p.P549S 0.18 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-RD-A7C1-01 10 133106633 133106633 C A TCERG1L Missense_Mutation p.A171S 0.12 deleterious(0) probably_damaging(0.931) TCGA-RD-A7C1-01 10 16916401 16916401 C T CUBN Missense_Mutation p.V3070I 0.38 deleterious(0.03) benign(0.032) TCGA-RD-A7C1-01 10 18250551 18250551 T C SLC39A12 Silent p.N101N 0.43 TCGA-RD-A7C1-01 10 32132415 32132415 T C ARHGAP12 Missense_Mutation p.T424A 0.29 tolerated(0.33) benign(0.015) TCGA-RD-A7C1-01 10 37430822 37430822 G T ANKRD30A Nonsense_Mutation p.E277* 0.16 TCGA-RD-A7C1-01 10 37430823 37430823 A G ANKRD30A Missense_Mutation p.E277G 0.16 tolerated(0.1) possibly_damaging(0.727) TCGA-RD-A7C1-01 10 50820023 50820023 C T SLC18A3 Missense_Mutation p.H413Y 0.17 tolerated(0.36) benign(0.107) TCGA-RD-A7C1-01 10 63188734 63188734 C T TMEM26 Silent p.A185A 0.25 TCGA-RD-A7C1-01 10 6521004 6521004 C A PRKCQ Missense_Mutation p.A435S 0.20 tolerated(0.22) possibly_damaging(0.847) TCGA-RD-A7C1-01 10 71142292 71142292 G A HK1 Missense_Mutation p.D443N 0.16 tolerated(0.07) benign(0.085) TCGA-RD-A7C1-01 10 73560492 73560492 C T CDH23 Missense_Mutation p.R248C 0.08 deleterious(0) probably_damaging(0.964) TCGA-RD-A7C1-01 10 7608116 7608116 C T ITIH5 Missense_Mutation p.G802S 0.30 tolerated(0.08) possibly_damaging(0.652) TCGA-RD-A7C1-01 10 7844266 7844266 A C ATP5C1 Missense_Mutation p.D224A 0.22 deleterious(0.02) benign(0.326) TCGA-RD-A7C1-01 10 81371633 81371633 G T SFTPA1 Missense_Mutation p.A33S 0.19 tolerated(0.48) benign(0.047) TCGA-RD-A7C1-01 10 875402 875402 G A LARP4B Nonsense_Mutation p.Q350* 0.16 TCGA-RD-A7C1-01 10 98287046 98287046 C T TM9SF3 Silent p.K542K 0.21 TCGA-RD-A7C1-01 11 102738680 102738680 C T MMP12 RNA 0.33 TCGA-RD-A7C1-01 11 110306593 110306593 G A FDX1 Missense_Mutation p.R74H 0.27 deleterious(0.01) probably_damaging(0.983) TCGA-RD-A7C1-01 11 113803163 113803163 A C HTR3B Missense_Mutation p.K174T 0.21 tolerated(1) benign(0.122) TCGA-RD-A7C1-01 11 120996400 120996400 C T TECTA Silent p.D531D 0.24 TCGA-RD-A7C1-01 11 124252389 124252389 A G OR8B2 Missense_Mutation p.L284P 0.26 deleterious_low_confidence(0) possibly_damaging(0.855) TCGA-RD-A7C1-01 11 124618613 124618613 G C VSIG2 Silent p.S211S 0.19 TCGA-RD-A7C1-01 11 126301404 126301404 C T KIRREL3 Missense_Mutation p.V536I 0.17 tolerated(1) possibly_damaging(0.493) TCGA-RD-A7C1-01 11 1265151 1265151 C T MUC5B Silent p.A2347A 0.53 TCGA-RD-A7C1-01 11 1267665 1267665 C T MUC5B Silent p.S3185S 0.39 TCGA-RD-A7C1-01 11 1269786 1269786 C T MUC5B Silent p.S3892S 0.29 TCGA-RD-A7C1-01 11 33565307 33565307 G C KIAA1549L Missense_Mutation p.S436T 0.82 tolerated_low_confidence(0.08) benign(0.219) TCGA-RD-A7C1-01 11 47372950 47372950 G A MYBPC3 Silent p.R44R 0.35 TCGA-RD-A7C1-01 11 47830054 47830054 G C NUP160 Missense_Mutation p.Q757E 0.20 tolerated(0.27) benign(0.007) TCGA-RD-A7C1-01 11 55110990 55110990 T G OR4A16 Missense_Mutation p.L105R 0.11 deleterious_low_confidence(0) benign(0.321) TCGA-RD-A7C1-01 11 55433603 55433603 A C OR4C6 3'UTR 0.14 TCGA-RD-A7C1-01 11 6190619 6190619 T G OR52B2 Missense_Mutation p.K313T 0.14 tolerated(0.4) benign(0.003) TCGA-RD-A7C1-01 11 62289355 62289355 G A AHNAK Silent p.D4178D 0.16 TCGA-RD-A7C1-01 11 62549652 62549652 G A TAF6L Missense_Mutation p.R225H 0.16 tolerated(0.33) benign(0.018) TCGA-RD-A7C1-01 11 6452560 6452560 C T HPX Missense_Mutation p.G424S 0.32 tolerated(0.46) benign(0.112) TCGA-RD-A7C1-01 11 64535599 64535599 G A SF1 Silent p.P474P 0.25 TCGA-RD-A7C1-01 11 64875340 64875340 G A VPS51 Missense_Mutation p.V191M 0.27 tolerated(0.35) benign(0.056) TCGA-RD-A7C1-01 11 66311333 66311333 C T ZDHHC24 Missense_Mutation p.G134D 0.09 tolerated(0.49) benign(0.027) TCGA-RD-A7C1-01 11 67209479 67209479 G A CORO1B Silent p.N94N 0.14 TCGA-RD-A7C1-01 11 726309 726309 A G EPS8L2 Missense_Mutation p.M587V 0.26 tolerated(0.59) benign(0.002) TCGA-RD-A7C1-01 11 76183702 76183702 C T C11orf30 Missense_Mutation p.T309M 0.09 deleterious(0) probably_damaging(0.951) TCGA-RD-A7C1-01 11 78380831 78380831 C T TENM4 Missense_Mutation p.A2187T 0.14 tolerated(0.09) probably_damaging(0.914) TCGA-RD-A7C1-01 11 85445391 85445391 C A SYTL2 Silent p.L326L 0.17 TCGA-RD-A7C1-01 11 88045627 88045627 G A CTSC Silent p.T138T 0.38 TCGA-RD-A7C1-01 11 89424117 89424117 A C FOLH1B RNA 0.12 TCGA-RD-A7C1-01 11 92087232 92087232 A G FAT3 Missense_Mutation p.R652G 0.08 benign(0.038) TCGA-RD-A7C1-01 11 92616432 92616432 G A FAT3 Silent p.S4270S 0.18 TCGA-RD-A7C1-01 11 96086843 96086843 C T CCDC82 Silent p.A534A 0.17 TCGA-RD-A7C1-01 11 96117157 96117157 C T CCDC82 Missense_Mutation p.R252H 0.23 tolerated(0.19) benign(0.055) TCGA-RD-A7C1-01 12 100452225 100452225 T C UHRF1BP1L Missense_Mutation p.K944E 0.06 tolerated(0.97) benign(0.004) TCGA-RD-A7C1-01 12 10133223 10133223 A C CLEC12A Missense_Mutation p.K151T 0.25 tolerated(0.07) benign(0.067) TCGA-RD-A7C1-01 12 108082531 108082531 G A PWP1 Missense_Mutation p.E91K 0.22 tolerated(0.38) benign(0.001) TCGA-RD-A7C1-01 12 124352667 124352667 G A DNAH10 Splice_Site p.X2389_splice 0.12 TCGA-RD-A7C1-01 12 20833196 20833196 A G PDE3A Silent p.P1139P 0.06 TCGA-RD-A7C1-01 12 25672806 25672806 T G IFLTD1 Missense_Mutation p.Q334H 0.22 tolerated(0.27) benign(0.028) TCGA-RD-A7C1-01 12 29920871 29920871 G A TMTC1 Missense_Mutation p.T147M 0.07 tolerated(0.08) possibly_damaging(0.849) TCGA-RD-A7C1-01 12 50197850 50197850 G A NCKAP5L 5'UTR 0.21 TCGA-RD-A7C1-01 12 50295007 50295007 C T FAIM2 Silent p.E39E 0.09 TCGA-RD-A7C1-01 12 53564266 53564266 C T CSAD Silent p.K223K 0.17 TCGA-RD-A7C1-01 12 58002361 58002361 C T DTX3 Missense_Mutation p.P270L 0.18 deleterious(0) probably_damaging(1) TCGA-RD-A7C1-01 12 58124619 58124619 C T AGAP2 Missense_Mutation p.G755R 0.17 deleterious(0) probably_damaging(1) TCGA-RD-A7C1-01 12 66849287 66849287 G A GRIP1 Missense_Mutation p.S367F 0.27 deleterious(0.03) probably_damaging(0.935) TCGA-RD-A7C1-01 12 72266761 72266761 C A TBC1D15 Missense_Mutation p.S61Y 0.12 deleterious(0) probably_damaging(1) TCGA-RD-A7C1-01 12 73046128 73046128 T C TRHDE Missense_Mutation p.V856A 0.19 deleterious(0.01) possibly_damaging(0.602) TCGA-RD-A7C1-01 12 7900062 7900062 G T CLEC4C 5'UTR 0.41 TCGA-RD-A7C1-01 12 82147836 82147836 G C PPFIA2 Missense_Mutation p.S55R 0.24 tolerated(0.24) benign(0.433) TCGA-RD-A7C1-01 12 9307391 9307391 C G PZP Missense_Mutation p.V1199L 0.22 tolerated(0.32) benign(0.19) TCGA-RD-A7C1-01 12 94243950 94243950 G A CRADD Missense_Mutation p.R168Q 0.13 deleterious(0.01) benign(0.251) TCGA-RD-A7C1-01 12 94654614 94654614 C T PLXNC1 Missense_Mutation p.R1150W 0.18 deleterious(0) probably_damaging(1) TCGA-RD-A7C1-01 13 101795569 101795569 C G NALCN Missense_Mutation p.E660D 0.22 tolerated(0.69) benign(0.09) TCGA-RD-A7C1-01 13 114309158 114309158 G A ATP4B Missense_Mutation p.P71L 0.40 deleterious(0) probably_damaging(0.999) TCGA-RD-A7C1-01 13 24234513 24234513 G A TNFRSF19 Missense_Mutation p.R207Q 0.12 tolerated(0.06) probably_damaging(0.983) TCGA-RD-A7C1-01 13 25670410 25670410 C T PABPC3 Missense_Mutation p.A25V 0.36 deleterious(0) benign(0.327) TCGA-RD-A7C1-01 13 29601027 29601027 A C MTUS2 Missense_Mutation p.K741T 0.15 deleterious(0.02) benign(0.357) TCGA-RD-A7C1-01 13 48835306 48835306 C T ITM2B Silent p.F249F 0.11 TCGA-RD-A7C1-01 13 51939972 51939972 T G INTS6 Missense_Mutation p.K860N 0.13 deleterious(0.01) probably_damaging(0.994) TCGA-RD-A7C1-01 13 58298857 58298857 G A PCDH17 Missense_Mutation p.R970H 0.12 deleterious(0.04) possibly_damaging(0.835) TCGA-RD-A7C1-01 13 67801206 67801206 C G PCDH9 Missense_Mutation p.R456T 0.22 deleterious(0.04) possibly_damaging(0.484) TCGA-RD-A7C1-01 13 70413190 70413190 A C KLHL1 Silent p.T444T 0.08 TCGA-RD-A7C1-01 13 74387318 74387318 C A KLF12 Silent p.T259T 0.09 TCGA-RD-A7C1-01 13 93518770 93518770 C A GPC5 3'UTR 0.41 TCGA-RD-A7C1-01 14 103430926 103430926 T G CDC42BPB Missense_Mutation p.Q880P 0.22 deleterious(0) probably_damaging(0.968) TCGA-RD-A7C1-01 14 106110198 106110198 G A IGHG2 Silent p.C140C 0.28 TCGA-RD-A7C1-01 14 22690105 22690105 C G TRAV35 Missense_Mutation p.L22V 0.32 tolerated(0.27) possibly_damaging(0.599) TCGA-RD-A7C1-01 14 23512058 23512058 C T PSMB11 Silent p.A208A 0.07 TCGA-RD-A7C1-01 14 32559900 32559900 C T ARHGAP5 Missense_Mutation p.R9C 0.20 deleterious(0) probably_damaging(1) TCGA-RD-A7C1-01 14 37180603 37180603 T C SLC25A21 Missense_Mutation p.T175A 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-RD-A7C1-01 14 45645883 45645883 A T FANCM Missense_Mutation p.H1309L 0.27 tolerated(0.73) benign(0) TCGA-RD-A7C1-01 14 64891553 64891553 G C MTHFD1 Silent p.V253V 0.13 TCGA-RD-A7C1-01 14 65008403 65008403 C T HSPA2 Missense_Mutation p.S279L 0.10 deleterious_low_confidence(0) possibly_damaging(0.599) TCGA-RD-A7C1-01 14 71444290 71444290 C A PCNX Missense_Mutation p.S412R 0.12 deleterious(0) benign(0.394) TCGA-RD-A7C1-01 14 79454401 79454401 A C NRXN3 Missense_Mutation p.N687T 0.18 deleterious(0) benign(0) TCGA-RD-A7C1-01 14 99641568 99641568 C G BCL11B Missense_Mutation p.E535D 0.18 tolerated(0.1) probably_damaging(0.968) TCGA-RD-A7C1-01 14 99697808 99697808 G A BCL11B Missense_Mutation p.R172C 0.24 tolerated(0.12) benign(0.189) TCGA-RD-A7C1-01 15 101589894 101589894 A G LRRK1 Silent p.G1115G 0.13 TCGA-RD-A7C1-01 15 23689096 23689096 T G GOLGA6L2 Missense_Mutation p.N140T 0.20 possibly_damaging(0.859) TCGA-RD-A7C1-01 15 30010507 30010507 T G TJP1 Missense_Mutation p.E1280A 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.515) TCGA-RD-A7C1-01 15 43656386 43656386 G A ZSCAN29 Missense_Mutation p.R473W 0.14 deleterious(0) probably_damaging(0.956) TCGA-RD-A7C1-01 15 43707879 43707879 C T TP53BP1 Missense_Mutation p.V1668I 0.27 tolerated(0.17) benign(0.012) TCGA-RD-A7C1-01 15 43932664 43932664 C T CATSPER2 Nonsense_Mutation p.W140* 0.09 TCGA-RD-A7C1-01 15 48056479 48056479 C T SEMA6D Silent p.P358P 0.23 TCGA-RD-A7C1-01 15 48429130 48429130 A G SLC24A5 Missense_Mutation p.S281G 0.17 tolerated(0.06) benign(0.008) TCGA-RD-A7C1-01 15 48451002 48451002 T C MYEF2 Missense_Mutation p.T279A 0.27 deleterious(0.01) probably_damaging(0.964) TCGA-RD-A7C1-01 15 49090149 49090149 C T CEP152 Missense_Mutation p.G63R 0.15 tolerated(0.1) benign(0.009) TCGA-RD-A7C1-01 15 51221203 51221203 C T AP4E1 Intron 0.28 TCGA-RD-A7C1-01 15 53815467 53815467 T C WDR72 Silent p.Q1067Q 0.11 TCGA-RD-A7C1-01 15 59970273 59970273 T G BNIP2 Missense_Mutation p.K224N 0.15 tolerated(0.1) probably_damaging(0.967) TCGA-RD-A7C1-01 15 63935637 63935637 C A HERC1 Missense_Mutation p.G3766V 0.34 probably_damaging(1) TCGA-RD-A7C1-01 15 72338409 72338409 G A MYO9A Silent p.L166L 0.27 TCGA-RD-A7C1-01 15 75308941 75308941 C T SCAMP5 Silent p.S48S 0.14 TCGA-RD-A7C1-01 15 83455853 83455853 C A FSD2 Missense_Mutation p.R97I 0.09 tolerated(0.07) benign(0.052) TCGA-RD-A7C1-01 15 83935597 83935597 G A BNC1 Silent p.Y142Y 0.15 TCGA-RD-A7C1-01 16 1261575 1261575 G A CACNA1H Missense_Mutation p.R1482Q 0.28 deleterious(0) probably_damaging(0.997) TCGA-RD-A7C1-01 16 2106756 2106756 G A TSC2 Missense_Mutation p.E254K 0.27 tolerated(0.06) probably_damaging(0.982) TCGA-RD-A7C1-01 16 31283265 31283265 C T ITGAM Missense_Mutation p.T219M 0.13 tolerated(0.17) benign(0.014) TCGA-RD-A7C1-01 16 3592702 3592702 G A NLRC3 Missense_Mutation p.R1051W 0.41 deleterious(0) possibly_damaging(0.696) TCGA-RD-A7C1-01 16 61935343 61935343 A G CDH8 Missense_Mutation p.I96T 0.11 tolerated(0.09) benign(0.32) TCGA-RD-A7C1-01 16 71736549 71736549 C A PHLPP2 Nonsense_Mutation p.E124* 0.20 TCGA-RD-A7C1-01 16 77232265 77232265 G T MON1B 3'UTR 0.33 TCGA-RD-A7C1-01 16 89804288 89804288 C T ZNF276 Nonsense_Mutation p.R517* 0.13 TCGA-RD-A7C1-01 17 1371342 1371342 C T MYO1C Missense_Mutation p.A946T 0.39 tolerated(0.1) benign(0.028) TCGA-RD-A7C1-01 17 1538829 1538829 C T SCARF1 Silent p.T572T 0.11 TCGA-RD-A7C1-01 17 16593937 16593937 G A CCDC144A Missense_Mutation p.D75N 0.44 deleterious_low_confidence(0.03) possibly_damaging(0.555) TCGA-RD-A7C1-01 17 3436156 3436156 G A TRPV3 Missense_Mutation p.T287M 0.42 deleterious(0) possibly_damaging(0.632) TCGA-RD-A7C1-01 17 36483371 36483371 G T GPR179 Silent p.I2027I 0.43 TCGA-RD-A7C1-01 17 36881037 36881037 G A MLLT6 Silent p.A1016A 0.23 TCGA-RD-A7C1-01 17 42457115 42457115 G A ITGA2B Missense_Mutation p.T607M 0.37 tolerated(0.06) benign(0.017) TCGA-RD-A7C1-01 17 46669423 46669423 C A HOXB5 3'UTR 0.35 TCGA-RD-A7C1-01 17 61497971 61497971 G A TANC2 Missense_Mutation p.R1543Q 0.52 deleterious_low_confidence(0.01) possibly_damaging(0.788) TCGA-RD-A7C1-01 17 72368351 72368351 C T GPR142 Missense_Mutation p.S334L 0.44 tolerated(0.08) benign(0.222) TCGA-RD-A7C1-01 17 8644967 8644967 C T CCDC42 Missense_Mutation p.R106H 0.31 tolerated(0.06) possibly_damaging(0.89) TCGA-RD-A7C1-01 17 8706480 8706480 T G PIK3R6 3'UTR 0.39 TCGA-RD-A7C1-01 18 50976977 50976977 G C DCC Missense_Mutation p.V1113L 0.24 tolerated(0.18) benign(0.008) TCGA-RD-A7C1-01 18 51013195 51013195 G A DCC Silent p.T1255T 0.21 TCGA-RD-A7C1-01 19 10747210 10747210 C T SLC44A2 Missense_Mutation p.P482L 0.26 deleterious(0) probably_damaging(0.979) TCGA-RD-A7C1-01 19 15566983 15566983 C T RASAL3 Silent p.L551L 0.08 TCGA-RD-A7C1-01 19 18001748 18001748 C T SLC5A5 Missense_Mutation p.R569W 0.32 deleterious(0.02) benign(0.006) TCGA-RD-A7C1-01 19 18561591 18561591 C A ELL Silent p.R387R 0.33 TCGA-RD-A7C1-01 19 37442127 37442127 A G ZNF568 3'Flank 0.19 TCGA-RD-A7C1-01 19 38905604 38905604 C T RASGRP4 Missense_Mutation p.G372S 0.22 tolerated(0.19) probably_damaging(1) TCGA-RD-A7C1-01 19 39088187 39088187 G A MAP4K1 Missense_Mutation p.R573W 0.31 deleterious(0) probably_damaging(0.934) TCGA-RD-A7C1-01 19 45515504 45515504 C T RELB Silent p.T158T 0.12 TCGA-RD-A7C1-01 19 49633794 49633794 G A PPFIA3 Missense_Mutation p.A273T 0.21 tolerated(0.19) possibly_damaging(0.723) TCGA-RD-A7C1-01 19 5223252 5223252 G A PTPRS Missense_Mutation p.R851C 0.33 deleterious(0) possibly_damaging(0.51) TCGA-RD-A7C1-01 19 53384561 53384561 T C ZNF320 Missense_Mutation p.Y273C 0.11 deleterious(0.02) probably_damaging(1) TCGA-RD-A7C1-01 19 55549586 55549586 C T GP6 Missense_Mutation p.A7T 0.24 tolerated_low_confidence(0.28) benign(0.065) TCGA-RD-A7C1-01 19 57326025 57326025 G T PEG3 Missense_Mutation p.A1262D 0.19 tolerated(0.06) possibly_damaging(0.536) TCGA-RD-A7C1-01 19 57327776 57327776 A G PEG3 Silent p.T678T 0.10 TCGA-RD-A7C1-01 19 58198355 58198355 C A ZNF551 Missense_Mutation p.L238I 0.11 deleterious(0.04) benign(0.03) TCGA-RD-A7C1-01 1 115220099 115220099 G A AMPD1 Missense_Mutation p.H454Y 0.08 tolerated(1) benign(0.013) TCGA-RD-A7C1-01 1 115251215 115251216 - T NRAS Frame_Shift_Ins p.L171Tfs*5 0.31 TCGA-RD-A7C1-01 1 11579855 11579855 C T PTCHD2 Silent p.R706R 0.19 TCGA-RD-A7C1-01 1 117626657 117626657 T C TTF2 Missense_Mutation p.S641P 0.08 deleterious(0) probably_damaging(0.999) TCGA-RD-A7C1-01 1 13001384 13001384 A G PRAMEF6 Missense_Mutation p.L100P 0.09 deleterious(0) probably_damaging(0.98) TCGA-RD-A7C1-01 1 152286119 152286119 G A FLG Missense_Mutation p.R415W 0.25 benign(0.1) TCGA-RD-A7C1-01 1 152784845 152784845 A C LCE1B 5'UTR 0.06 TCGA-RD-A7C1-01 1 154544270 154544270 G T CHRNB2 Missense_Mutation p.R324L 0.41 deleterious(0) probably_damaging(1) TCGA-RD-A7C1-01 1 1580528 1580528 C T CDK11B Missense_Mutation p.R200Q 0.15 benign(0.274) TCGA-RD-A7C1-01 1 158151920 158151920 A C CD1D Missense_Mutation p.S143R 0.10 tolerated(0.07) benign(0.314) TCGA-RD-A7C1-01 1 158368690 158368690 G A OR10T2 Silent p.A189A 0.13 TCGA-RD-A7C1-01 1 158736313 158736313 G T OR6N1 Silent p.R54R 0.31 TCGA-RD-A7C1-01 1 159163218 159163218 C T CADM3 Missense_Mutation p.P164S 0.07 deleterious(0.01) probably_damaging(0.994) TCGA-RD-A7C1-01 1 16060480 16060480 C T PLEKHM2 3'UTR 0.38 TCGA-RD-A7C1-01 1 161488774 161488774 C T FCGR2A 3'UTR 0.09 TCGA-RD-A7C1-01 1 169672428 169672428 C G SELL Missense_Mutation p.G320A 0.12 deleterious(0.05) probably_damaging(0.96) TCGA-RD-A7C1-01 1 170688908 170688908 C T PRRX1 Nonsense_Mutation p.R95* 0.43 TCGA-RD-A7C1-01 1 175365679 175365679 C T TNR Splice_Site p.X414_splice 0.11 TCGA-RD-A7C1-01 1 176564058 176564058 C A PAPPA2 Missense_Mutation p.H440N 0.29 tolerated(0.28) benign(0.001) TCGA-RD-A7C1-01 1 196643035 196643035 T A CFH Missense_Mutation p.L98H 0.35 deleterious(0) probably_damaging(0.987) TCGA-RD-A7C1-01 1 200522490 200522490 T C KIF14 3'UTR 0.12 TCGA-RD-A7C1-01 1 214819304 214819304 G A CENPF Missense_Mutation p.D2131N 0.09 probably_damaging(0.998) TCGA-RD-A7C1-01 1 218504487 218504487 C T RRP15 3'UTR 0.38 TCGA-RD-A7C1-01 1 228285822 228285822 C T ARF1 3'UTR 0.62 TCGA-RD-A7C1-01 1 233512265 233512265 A G MLK4 Missense_Mutation p.D639G 0.19 deleterious(0.03) possibly_damaging(0.83) TCGA-RD-A7C1-01 1 244615083 244615083 G A ADSS Silent p.L13L 0.17 TCGA-RD-A7C1-01 1 248004834 248004834 C T OR11L1 Missense_Mutation p.R122H 0.07 deleterious(0) possibly_damaging(0.828) TCGA-RD-A7C1-01 1 248112402 248112402 A T OR2L8 Silent p.A81A 0.32 TCGA-RD-A7C1-01 1 27023751 27023755 CTCCC - ARID1A Frame_Shift_Del p.P287Afs*111 0.33 TCGA-RD-A7C1-01 1 2939155 2939155 C T ACTRT2 Missense_Mutation p.S302L 0.23 deleterious(0) possibly_damaging(0.804) TCGA-RD-A7C1-01 1 3322163 3322163 C T PRDM16 Silent p.S379S 0.27 TCGA-RD-A7C1-01 1 45793415 45793415 C A HPDL Missense_Mutation p.L199M 0.06 tolerated(0.09) benign(0.071) TCGA-RD-A7C1-01 1 57383376 57383376 C T C8A Missense_Mutation p.T581M 0.19 deleterious(0) probably_damaging(0.973) TCGA-RD-A7C1-01 1 62190931 62190931 C T TM2D1 Silent p.G16G 0.10 TCGA-RD-A7C1-01 1 85555822 85555822 C T WDR63 Missense_Mutation p.T255M 0.10 deleterious(0.01) probably_damaging(0.915) TCGA-RD-A7C1-01 20 1961099 1961099 C T PDYN Missense_Mutation p.R212Q 0.17 deleterious(0) probably_damaging(0.999) TCGA-RD-A7C1-01 20 20278996 20278996 C T C20orf26 Missense_Mutation p.R1130W 0.53 deleterious(0) probably_damaging(0.999) TCGA-RD-A7C1-01 20 33637793 33637793 T C TRPC4AP Missense_Mutation p.E178G 0.23 tolerated(0.12) benign(0.014) TCGA-RD-A7C1-01 20 35444681 35444681 C A SOGA1 Missense_Mutation p.L388F 0.46 deleterious(0) probably_damaging(1) TCGA-RD-A7C1-01 20 35738678 35738680 TCT - MROH8 In_Frame_Del p.R992del 0.15 TCGA-RD-A7C1-01 20 42264652 42264652 C T IFT52 Missense_Mutation p.A337V 0.39 deleterious(0) probably_damaging(0.975) TCGA-RD-A7C1-01 20 49626318 49626318 G A KCNG1 Silent p.D186D 0.08 TCGA-RD-A7C1-01 20 50140551 50140551 T C NFATC2 Missense_Mutation p.S77G 0.21 deleterious(0) benign(0.005) TCGA-RD-A7C1-01 20 51872386 51872386 G A TSHZ2 Missense_Mutation p.D797N 0.17 deleterious(0) probably_damaging(0.998) TCGA-RD-A7C1-01 20 62223462 62223462 C T GMEB2 Missense_Mutation p.G289S 0.05 deleterious(0.01) possibly_damaging(0.874) TCGA-RD-A7C1-01 20 62493575 62493575 G A ABHD16B Missense_Mutation p.E228K 0.43 tolerated(0.38) benign(0) TCGA-RD-A7C1-01 20 62571777 62571777 G T UCKL1 Missense_Mutation p.T455N 0.08 deleterious(0.01) probably_damaging(0.917) TCGA-RD-A7C1-01 22 29446820 29446820 C T ZNRF3 Missense_Mutation p.A884V 0.19 tolerated_low_confidence(0.08) benign(0.004) TCGA-RD-A7C1-01 22 51178361 51178361 C T ACR Missense_Mutation p.S174F 0.18 deleterious(0.03) possibly_damaging(0.863) TCGA-RD-A7C1-01 2 113012503 113012503 G A ZC3H8 Missense_Mutation p.A19V 0.34 tolerated_low_confidence(0.22) benign(0.003) TCGA-RD-A7C1-01 2 128712790 128712790 G A SAP130 Missense_Mutation p.P757L 0.16 tolerated_low_confidence(0.12) unknown(0) TCGA-RD-A7C1-01 2 135027982 135027986 ATTAG C MGAT5 Frame_Shift_Del p.L89Ffs*74 0.16 TCGA-RD-A7C1-01 2 152534502 152534502 G A NEB Missense_Mutation p.A1152V 0.08 probably_damaging(0.956) TCGA-RD-A7C1-01 2 160289338 160289338 A C BAZ2B Missense_Mutation p.D610E 0.13 benign(0.417) TCGA-RD-A7C1-01 2 167301492 167301492 T G SCN7A Missense_Mutation p.K469T 0.22 deleterious(0.01) possibly_damaging(0.851) TCGA-RD-A7C1-01 2 179399663 179399663 C T TTN Silent p.E33893E 0.44 TCGA-RD-A7C1-01 2 179409019 179409019 C G TTN Missense_Mutation p.Q31979H 0.37 TCGA-RD-A7C1-01 2 179482952 179482952 C G TTN Missense_Mutation p.E15745Q 0.15 TCGA-RD-A7C1-01 2 200797906 200797906 T G TYW5 Missense_Mutation p.I278L 0.10 tolerated(0.22) benign(0.001) TCGA-RD-A7C1-01 2 203156073 203156073 T C NOP58 Intron 0.12 TCGA-RD-A7C1-01 2 207424843 207424843 G A ADAM23 Splice_Site p.X390_splice 0.24 TCGA-RD-A7C1-01 2 207460850 207460850 A G ADAM23 Missense_Mutation p.R775G 0.11 tolerated(0.12) benign(0.11) TCGA-RD-A7C1-01 2 209028005 209028005 G A CRYGA Missense_Mutation p.R59C 0.09 deleterious(0.02) benign(0.343) TCGA-RD-A7C1-01 2 216243984 216243984 C T FN1 Missense_Mutation p.A1831T 0.14 deleterious(0.01) possibly_damaging(0.664) TCGA-RD-A7C1-01 2 220309612 220309612 G A SPEG Missense_Mutation p.E182K 0.21 possibly_damaging(0.84) TCGA-RD-A7C1-01 2 231077540 231077540 C T SP110 Silent p.S173S 0.27 TCGA-RD-A7C1-01 2 241494402 241494402 C A ANKMY1 5'UTR 0.27 TCGA-RD-A7C1-01 2 242179184 242179185 - GTG HDLBP In_Frame_Ins p.H814dup 0.23 TCGA-RD-A7C1-01 2 31625932 31625932 C T XDH Missense_Mutation p.R60H 0.13 tolerated(0.13) benign(0.003) TCGA-RD-A7C1-01 2 80085199 80085199 G A CTNNA2 Missense_Mutation p.R120H 0.09 deleterious(0) probably_damaging(0.997) TCGA-RD-A7C1-01 2 80530256 80530256 G A LRRTM1 Missense_Mutation p.P230L 0.12 tolerated(0.06) probably_damaging(0.998) TCGA-RD-A7C1-01 2 89326710 89326710 T G IGKV3-11 Missense_Mutation p.E101D 0.16 tolerated(0.16) benign(0.176) TCGA-RD-A7C1-01 2 9515045 9515045 C T ASAP2 Missense_Mutation p.T573M 0.14 tolerated(0.31) benign(0.066) TCGA-RD-A7C1-01 3 135721796 135721796 A G PPP2R3A Missense_Mutation p.K486E 0.12 tolerated_low_confidence(0.63) benign(0.002) TCGA-RD-A7C1-01 3 1425012 1425012 A T CNTN6 Missense_Mutation p.S813C 0.36 deleterious(0) probably_damaging(0.998) TCGA-RD-A7C1-01 3 151165455 151165455 G A IGSF10 Nonsense_Mutation p.R772* 0.43 TCGA-RD-A7C1-01 3 172061938 172061938 G A FNDC3B Missense_Mutation p.E714K 0.10 tolerated(0.06) benign(0.082) TCGA-RD-A7C1-01 3 183906155 183906155 C T ABCF3 Missense_Mutation p.R266W 0.23 deleterious(0.01) possibly_damaging(0.773) TCGA-RD-A7C1-01 3 186761057 186761057 C G ST6GAL1 Nonsense_Mutation p.S189* 0.17 TCGA-RD-A7C1-01 3 28368376 28368376 T A AZI2 Missense_Mutation p.Q238L 0.10 deleterious(0.05) benign(0.237) TCGA-RD-A7C1-01 3 40231684 40231684 A C MYRIP Missense_Mutation p.E465D 0.41 tolerated(0.23) benign(0.058) TCGA-RD-A7C1-01 3 443365 443365 A C CHL1 Missense_Mutation p.T1148P 0.15 deleterious(0) probably_damaging(0.97) TCGA-RD-A7C1-01 3 44775970 44775970 G T ZNF501 Missense_Mutation p.K19N 0.15 deleterious_low_confidence(0) benign(0.025) TCGA-RD-A7C1-01 3 50355686 50355686 G C HYAL2 Silent p.G432G 0.11 TCGA-RD-A7C1-01 3 50357644 50357644 C T HYAL2 Missense_Mutation p.G93R 0.48 tolerated(0.2) benign(0.055) TCGA-RD-A7C1-01 3 52526263 52526263 C T NISCH Missense_Mutation p.P1427L 0.25 deleterious(0.01) probably_damaging(0.982) TCGA-RD-A7C1-01 3 65464281 65464281 T C MAGI1 Missense_Mutation p.N248S 0.39 tolerated(0.1) benign(0.031) TCGA-RD-A7C1-01 3 93595984 93595984 T C PROS1 Missense_Mutation p.S566G 0.49 tolerated(0.14) benign(0.158) TCGA-RD-A7C1-01 3 96706401 96706401 A C EPHA6 Silent p.S226S 0.39 TCGA-RD-A7C1-01 4 1017851 1017851 C T FGFRL1 Missense_Mutation p.A227V 0.30 tolerated(0.48) benign(0.027) TCGA-RD-A7C1-01 4 1164265 1164265 G C SPON2 Missense_Mutation p.Q246E 0.25 tolerated(0.34) benign(0.001) TCGA-RD-A7C1-01 4 119035974 119035974 A C NDST3 Missense_Mutation p.E361D 0.11 deleterious(0) possibly_damaging(0.715) TCGA-RD-A7C1-01 4 120213587 120213587 G C USP53 Missense_Mutation p.D815H 0.09 deleterious_low_confidence(0.03) benign(0.176) TCGA-RD-A7C1-01 4 122075740 122075740 T G TNIP3 Missense_Mutation p.E230A 0.18 deleterious(0) benign(0.307) TCGA-RD-A7C1-01 4 122301574 122301574 G A QRFPR Missense_Mutation p.R77C 0.21 deleterious(0) probably_damaging(0.997) TCGA-RD-A7C1-01 4 146468031 146468031 A G SMAD1 Missense_Mutation p.N318D 0.07 deleterious(0) probably_damaging(0.998) TCGA-RD-A7C1-01 4 164394749 164394749 C T TKTL2 Silent p.A46A 0.17 TCGA-RD-A7C1-01 4 71200811 71200811 A T CABS1 Nonsense_Mutation p.K19* 0.17 TCGA-RD-A7C1-01 4 71347381 71347381 C G MUC7 Missense_Mutation p.P307R 0.09 deleterious_low_confidence(0.01) unknown(0) TCGA-RD-A7C1-01 4 74846961 74846961 G A PF4 Missense_Mutation p.P89L 0.22 deleterious(0.03) benign(0.011) TCGA-RD-A7C1-01 4 76852387 76852387 G A NAAA Missense_Mutation p.T190I 0.16 deleterious(0) probably_damaging(0.995) TCGA-RD-A7C1-01 4 7728538 7728538 C T SORCS2 Missense_Mutation p.T926M 0.31 tolerated(0.22) benign(0.221) TCGA-RD-A7C1-01 4 79229294 79229294 G A FRAS1 Missense_Mutation p.V537M 0.16 benign(0.223) TCGA-RD-A7C1-01 4 8098895 8098895 A C ABLIM2 Missense_Mutation p.I90S 0.13 deleterious(0) probably_damaging(1) TCGA-RD-A7C1-01 4 85612843 85612843 T C WDFY3 Missense_Mutation p.T3049A 0.11 tolerated(0.18) benign(0.103) TCGA-RD-A7C1-01 4 87684044 87684044 C T PTPN13 Missense_Mutation p.R1240W 0.07 tolerated(0.07) benign(0.013) TCGA-RD-A7C1-01 5 115329482 115329482 G T AQPEP Missense_Mutation p.W435C 0.07 deleterious(0) probably_damaging(1) TCGA-RD-A7C1-01 5 118728940 118728940 G A TNFAIP8 Missense_Mutation p.R154Q 0.39 deleterious(0) possibly_damaging(0.901) TCGA-RD-A7C1-01 5 128984637 128984637 T G ADAMTS19 Missense_Mutation p.L711R 0.09 tolerated(0.18) benign(0.066) TCGA-RD-A7C1-01 5 134010343 134010343 C T SEC24A Nonsense_Mutation p.R286* 0.08 TCGA-RD-A7C1-01 5 140236619 140236619 T C PCDHA10 Missense_Mutation p.M329T 0.40 deleterious_low_confidence(0) probably_damaging(0.967) TCGA-RD-A7C1-01 5 140503423 140503423 G A PCDHB4 Missense_Mutation p.G615S 0.38 tolerated_low_confidence(0.99) benign(0.01) TCGA-RD-A7C1-01 5 140725549 140725549 G T PCDHGA3 Missense_Mutation p.G650V 0.14 deleterious_low_confidence(0) probably_damaging(1) TCGA-RD-A7C1-01 5 156768085 156768085 C T CYFIP2 Missense_Mutation p.R839W 0.12 deleterious(0) probably_damaging(0.973) TCGA-RD-A7C1-01 5 160029609 160029609 A T ATP10B Missense_Mutation p.V1113E 0.35 deleterious(0) probably_damaging(0.944) TCGA-RD-A7C1-01 5 161116320 161116320 T C GABRA6 Silent p.A169A 0.09 TCGA-RD-A7C1-01 5 169533337 169533337 T C FOXI1 Missense_Mutation p.Y126H 0.12 deleterious(0) probably_damaging(0.999) TCGA-RD-A7C1-01 5 171305023 171305023 A C FBXW11 Silent p.S300S 0.12 TCGA-RD-A7C1-01 5 172659820 172659820 C T NKX2-5 Missense_Mutation p.V243M 0.09 tolerated(0.25) benign(0.135) TCGA-RD-A7C1-01 5 178408716 178408716 T C GRM6 Missense_Mutation p.K859R 0.10 tolerated(0.11) benign(0.082) TCGA-RD-A7C1-01 5 50689599 50689599 G A ISL1 3'UTR 0.41 TCGA-RD-A7C1-01 5 6604732 6604732 G A NSUN2 Missense_Mutation p.R602W 0.31 deleterious(0) probably_damaging(1) TCGA-RD-A7C1-01 5 81474399 81474399 C T ATG10 Missense_Mutation p.T149M 0.10 deleterious(0) probably_damaging(0.995) TCGA-RD-A7C1-01 6 121563367 121563367 G A TBC1D32 Nonsense_Mutation p.R713* 0.17 TCGA-RD-A7C1-01 6 121563368 121563368 A T TBC1D32 Missense_Mutation p.N712K 0.18 deleterious(0.05) benign(0.018) TCGA-RD-A7C1-01 6 127771272 127771272 C G KIAA0408 Missense_Mutation p.E121Q 0.42 deleterious(0.01) possibly_damaging(0.805) TCGA-RD-A7C1-01 6 137476154 137476154 G A IL22RA2 Silent p.Y132Y 0.10 TCGA-RD-A7C1-01 6 143605350 143605350 G C AIG1 Missense_Mutation p.G168A 0.16 tolerated(1) benign(0.003) TCGA-RD-A7C1-01 6 158093811 158093811 C T ZDHHC14 Missense_Mutation p.T375M 0.16 tolerated(0.07) possibly_damaging(0.66) TCGA-RD-A7C1-01 6 26157095 26157095 G C HIST1H1E Missense_Mutation p.K159N 0.29 deleterious(0.04) unknown(0) TCGA-RD-A7C1-01 6 27419285 27419285 G C ZNF184 Missense_Mutation p.L685V 0.36 deleterious(0.02) possibly_damaging(0.907) TCGA-RD-A7C1-01 6 28542681 28542681 A C SCAND3 Missense_Mutation p.L601V 0.45 tolerated_low_confidence(0.19) benign(0.002) TCGA-RD-A7C1-01 6 30036476 30036479 GTGA - PPP1R11 Splice_Site p.X60_splice 0.15 TCGA-RD-A7C1-01 6 32825114 32825116 CAG - PSMB9 In_Frame_Del p.A70del 0.12 TCGA-RD-A7C1-01 6 43582081 43582081 G A POLH Silent p.P643P 0.13 TCGA-RD-A7C1-01 6 69348631 69348631 T G BAI3 Missense_Mutation p.F22V 0.10 tolerated(0.17) benign(0.007) TCGA-RD-A7C1-01 6 70037721 70037721 C G BAI3 Missense_Mutation p.A992G 0.13 deleterious(0.01) probably_damaging(0.996) TCGA-RD-A7C1-01 6 71269644 71269644 A C FAM135A 3'UTR 0.10 TCGA-RD-A7C1-01 6 75892916 75892916 G A COL12A1 Missense_Mutation p.R581C 0.12 probably_damaging(0.999) TCGA-RD-A7C1-01 6 90403852 90403852 C T MDN1 Silent p.L3274L 0.16 TCGA-RD-A7C1-01 6 94120278 94120278 A C EPHA7 Missense_Mutation p.V258G 0.28 deleterious(0.01) probably_damaging(0.997) TCGA-RD-A7C1-01 7 100320788 100320788 C T EPO 3'UTR 0.11 TCGA-RD-A7C1-01 7 121773649 121773649 G C AASS Silent p.P44P 0.08 TCGA-RD-A7C1-01 7 122755522 122755524 ATT - SLC13A1 3'UTR 0.22 TCGA-RD-A7C1-01 7 150493586 150493586 G A TMEM176B Silent p.N24N 0.30 TCGA-RD-A7C1-01 7 152345889 152345889 G A XRCC2 Silent p.L227L 0.22 TCGA-RD-A7C1-01 7 23164761 23164761 A G KLHL7 Missense_Mutation p.K138E 0.13 deleterious(0.03) benign(0.353) TCGA-RD-A7C1-01 7 73471727 73471727 G T ELN Intron 0.17 TCGA-RD-A7C1-01 7 80292468 80292468 G C CD36 Missense_Mutation p.V198L 0.12 tolerated(0.41) benign(0.02) TCGA-RD-A7C1-01 7 89856419 89856419 T C STEAP2 Silent p.F209F 0.16 TCGA-RD-A7C1-01 7 98257773 98257773 C G NPTX2 Missense_Mutation p.F376L 0.26 tolerated(0.16) possibly_damaging(0.513) TCGA-RD-A7C1-01 8 100789121 100789121 G A VPS13B Missense_Mutation p.V2481I 0.09 tolerated(0.44) benign(0) TCGA-RD-A7C1-01 8 106815226 106815226 A G ZFPM2 Missense_Mutation p.I972M 0.16 deleterious(0.04) possibly_damaging(0.613) TCGA-RD-A7C1-01 8 108334209 108334209 G A ANGPT1 Silent p.T241T 0.17 TCGA-RD-A7C1-01 8 114326962 114326962 C T CSMD3 Missense_Mutation p.G80D 0.08 deleterious(0.04) possibly_damaging(0.574) TCGA-RD-A7C1-01 8 134233067 134233067 G A WISP1 Missense_Mutation p.R198H 0.25 deleterious(0.04) possibly_damaging(0.776) TCGA-RD-A7C1-01 8 139606337 139606337 C A COL22A1 Missense_Mutation p.R1513L 0.20 unknown(0) TCGA-RD-A7C1-01 8 143866833 143866833 G A LY6D Missense_Mutation p.A64V 0.26 tolerated(1) benign(0.005) TCGA-RD-A7C1-01 8 143999195 143999195 G T CYP11B2 Missense_Mutation p.A21E 0.07 tolerated(0.06) possibly_damaging(0.564) TCGA-RD-A7C1-01 8 145622772 145622772 C T CPSF1 Missense_Mutation p.R772Q 0.33 tolerated(0.51) benign(0.048) TCGA-RD-A7C1-01 8 1513881 1513881 C T DLGAP2 Silent p.T341T 0.28 TCGA-RD-A7C1-01 8 1728821 1728821 G A CLN8 3'UTR 0.12 TCGA-RD-A7C1-01 8 2092797 2092797 C T MYOM2 Silent p.D1430D 0.44 TCGA-RD-A7C1-01 8 24344712 24344712 G A ADAM7 Missense_Mutation p.D325N 0.40 tolerated(0.84) probably_damaging(0.985) TCGA-RD-A7C1-01 8 3087592 3087592 A G CSMD1 Missense_Mutation p.F1439L 0.07 benign(0.373) TCGA-RD-A7C1-01 8 3087703 3087703 G T CSMD1 Missense_Mutation p.R1402S 0.27 possibly_damaging(0.55) TCGA-RD-A7C1-01 8 3087704 3087704 G C CSMD1 Silent p.T1401T 0.32 TCGA-RD-A7C1-01 8 42591674 42591674 C T CHRNB3 Silent p.F430F 0.32 TCGA-RD-A7C1-01 8 52323869 52323869 G A PXDNL Missense_Mutation p.T668M 0.19 deleterious(0) possibly_damaging(0.625) TCGA-RD-A7C1-01 8 86115407 86115407 A G E2F5 Silent p.E141E 0.10 TCGA-RD-A7C1-01 8 87111221 87111221 C T ATP6V0D2 Missense_Mutation p.A5V 0.08 deleterious(0.03) benign(0.07) TCGA-RD-A7C1-01 8 88365898 88365898 T C CNBD1 Missense_Mutation p.L396P 0.21 deleterious(0) probably_damaging(0.999) TCGA-RD-A7C1-01 8 98289633 98289633 T C TSPYL5 Missense_Mutation p.K147R 0.09 tolerated(0.15) benign(0.011) TCGA-RD-A7C1-01 9 116183431 116183431 G A C9orf43 Missense_Mutation p.V132I 0.16 tolerated(0.06) probably_damaging(0.978) TCGA-RD-A7C1-01 9 12709255 12709256 TG - TYRP1 3'UTR 0.26 TCGA-RD-A7C1-01 9 134098270 134098270 G A NUP214 Missense_Mutation p.G1952E 0.36 probably_damaging(0.998) TCGA-RD-A7C1-01 9 139741626 139741626 C T C9orf172 Silent p.V920V 0.13 TCGA-RD-A7C1-01 9 141016021 141016021 C T CACNA1B Missense_Mutation p.P2197L 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-RD-A7C1-01 9 95009793 95009793 T G IARS Missense_Mutation p.N886T 0.40 tolerated(0.36) benign(0.001) TCGA-RD-A7C1-01 X 100395797 100395797 T - CENPI Intron 0.23 TCGA-RD-A7C1-01 X 125685222 125685222 T G DCAF12L1 Missense_Mutation p.N457T 0.55 deleterious(0) possibly_damaging(0.721) TCGA-RD-A7C1-01 X 134428124 134428124 T G ZNF75D 5'UTR 0.60 TCGA-RD-A7C1-01 X 150349386 150349386 T C GPR50 Missense_Mutation p.V444A 0.15 deleterious_low_confidence(0) benign(0.121) TCGA-RD-A7C1-01 X 154159298 154159298 A C F8 Missense_Mutation p.L923V 0.58 tolerated(0.14) benign(0.013) TCGA-RD-A7C1-01 X 154508537 154508537 G C CLIC2 Missense_Mutation p.D161E 0.59 tolerated(0.07) benign(0.022) TCGA-RD-A7C1-01 X 26157988 26157988 C T MAGEB18 Missense_Mutation p.P296S 0.59 deleterious(0) probably_damaging(0.962) TCGA-RD-A7C1-01 X 32563331 32563331 G C DMD Missense_Mutation p.P705A 0.13 probably_damaging(0.932) TCGA-RD-A7C1-01 X 50376644 50376644 T G SHROOM4 Missense_Mutation p.N810T 0.54 tolerated(0.47) benign(0.019) TCGA-RD-A7C1-01 X 68749674 68749674 C T FAM155B Missense_Mutation p.R432W 0.54 deleterious(0) probably_damaging(0.992) TCGA-RD-A7C1-01 X 71427962 71427962 C T ERCC6L Missense_Mutation p.E219K 0.57 tolerated(0.06) benign(0.049) TCGA-RD-A7C1-01 X 71522051 71522051 G A CITED1 Missense_Mutation p.A61V 0.61 tolerated_low_confidence(0.05) benign(0.274) TCGA-RD-A7C1-01 X 7880119 7880119 T G PNPLA4 Missense_Mutation p.S143R 0.21 deleterious(0) probably_damaging(0.994) TCGA-RD-A7C1-01 X 85403712 85403712 T C DACH2 Missense_Mutation p.S30P 0.89 tolerated(0.08) benign(0.006) TCGA-RD-A8MV-01 10 14572425 14572425 G A FAM107B Missense_Mutation p.P187S 0.10 tolerated(0.08) benign(0.224) TCGA-RD-A8MV-01 10 27703027 27703027 C T PTCHD3 Silent p.P51P 0.17 TCGA-RD-A8MV-01 10 61830901 61830901 A T ANK3 Missense_Mutation p.N3246K 0.13 benign(0.001) TCGA-RD-A8MV-01 10 64573442 64573442 G T EGR2 Missense_Mutation p.P319H 0.31 deleterious(0) probably_damaging(0.953) TCGA-RD-A8MV-01 10 75265146 75265146 G A USP54 Missense_Mutation p.H1364Y 0.08 deleterious(0.01) benign(0.049) TCGA-RD-A8MV-01 10 75435828 75435828 G A AGAP5 Missense_Mutation p.S197F 0.17 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-RD-A8MV-01 10 82330007 82330007 G C SH2D4B Missense_Mutation p.E94D 0.15 tolerated(0.4) benign(0.012) TCGA-RD-A8MV-01 10 94834731 94834731 G A CYP26A1 Missense_Mutation p.G204R 0.26 tolerated(0.11) benign(0.002) TCGA-RD-A8MV-01 11 108117812 108117813 - A ATM Frame_Shift_Ins p.E343Rfs*5 0.22 TCGA-RD-A8MV-01 11 110451341 110451341 T C ARHGAP20 Missense_Mutation p.T777A 0.09 tolerated(0.74) benign(0) TCGA-RD-A8MV-01 11 114182997 114182997 C T NNMT Missense_Mutation p.A198V 0.14 tolerated(0.59) benign(0.023) TCGA-RD-A8MV-01 11 36422780 36422780 C T PRR5L Nonsense_Mutation p.R37* 0.14 TCGA-RD-A8MV-01 11 55135832 55135832 T C OR4A15 Missense_Mutation p.L158P 0.11 deleterious_low_confidence(0) probably_damaging(1) TCGA-RD-A8MV-01 11 5776758 5776758 C A OR52N4 Missense_Mutation p.S263Y 0.14 deleterious(0) benign(0.022) TCGA-RD-A8MV-01 11 62554693 62554693 G C TAF6L Silent p.L598L 0.25 TCGA-RD-A8MV-01 11 64108918 64108918 G A CCDC88B Missense_Mutation p.R158H 0.12 deleterious(0.01) probably_damaging(0.976) TCGA-RD-A8MV-01 12 120510450 120510450 G A CCDC64 Missense_Mutation p.D409N 0.15 tolerated(0.1) possibly_damaging(0.894) TCGA-RD-A8MV-01 12 41463933 41463933 T C CNTN1 3'UTR 0.30 TCGA-RD-A8MV-01 12 41900351 41900351 C T PDZRN4 Nonsense_Mutation p.R313* 0.16 TCGA-RD-A8MV-01 12 57578643 57578643 G A LRP1 Missense_Mutation p.D2070N 0.24 probably_damaging(0.998) TCGA-RD-A8MV-01 13 103418791 103418791 C G TEX30 Missense_Mutation p.W215S 0.11 deleterious(0) probably_damaging(0.999) TCGA-RD-A8MV-01 13 37269580 37269580 A G SERTM1 3'UTR 0.28 TCGA-RD-A8MV-01 13 52971375 52971375 C G THSD1 Missense_Mutation p.R338T 0.27 deleterious(0) probably_damaging(0.999) TCGA-RD-A8MV-01 13 84455149 84455149 A C SLITRK1 Missense_Mutation p.L165R 0.13 deleterious(0) probably_damaging(1) TCGA-RD-A8MV-01 14 22111781 22111781 G T TRAV1-2 Missense_Mutation p.A101S 0.13 deleterious(0) probably_damaging(0.999) TCGA-RD-A8MV-01 15 101445785 101445785 G A ALDH1A3 Missense_Mutation p.G376R 0.17 deleterious(0) probably_damaging(1) TCGA-RD-A8MV-01 15 24922914 24922914 A C NPAP1 Missense_Mutation p.S634R 0.09 deleterious(0.04) benign(0.025) TCGA-RD-A8MV-01 15 77239853 77239853 A G RCN2 Missense_Mutation p.D218G 0.17 deleterious(0.02) possibly_damaging(0.589) TCGA-RD-A8MV-01 15 86838560 86838560 G A AGBL1 Silent p.T719T 0.11 TCGA-RD-A8MV-01 16 1612045 1612045 G T IFT140 Missense_Mutation p.P714T 0.08 tolerated(0.06) benign(0.097) TCGA-RD-A8MV-01 16 31382427 31382427 C G ITGAX Missense_Mutation p.S578C 0.18 deleterious(0.01) benign(0.386) TCGA-RD-A8MV-01 16 31425795 31425795 T G ITGAD Missense_Mutation p.F674V 0.25 deleterious(0) benign(0.122) TCGA-RD-A8MV-01 16 31512026 31512026 C T C16orf58 Missense_Mutation p.V148I 0.10 tolerated(0.83) benign(0.004) TCGA-RD-A8MV-01 17 27958230 27958230 C T SSH2 Missense_Mutation p.A1301T 0.09 tolerated_low_confidence(0.36) benign(0.003) TCGA-RD-A8MV-01 17 40997634 40997634 T - AOC2 Frame_Shift_Del p.F331Lfs*11 0.14 TCGA-RD-A8MV-01 17 6547843 6547843 G A MED31 Missense_Mutation p.R114C 0.19 deleterious(0) probably_damaging(0.977) TCGA-RD-A8MV-01 17 7662780 7662780 G A DNAH2 Missense_Mutation p.R830H 0.05 benign(0.001) TCGA-RD-A8MV-01 18 28588123 28588123 A G DSC3 Missense_Mutation p.Y508H 0.29 deleterious(0) probably_damaging(1) TCGA-RD-A8MV-01 19 32844004 32844004 G C ZNF507 Missense_Mutation p.A90P 0.05 tolerated(0.11) probably_damaging(0.981) TCGA-RD-A8MV-01 19 36222961 36222961 C T KMT2B Nonsense_Mutation p.R1864* 0.31 TCGA-RD-A8MV-01 19 36236323 36236323 C - PSENEN 5'UTR 0.17 TCGA-RD-A8MV-01 19 43969710 43969710 C T LYPD3 Missense_Mutation p.R5K 0.11 tolerated(0.08) benign(0.047) TCGA-RD-A8MV-01 19 44833415 44833415 G T ZNF112 Missense_Mutation p.Q305K 0.12 tolerated(0.1) benign(0.018) TCGA-RD-A8MV-01 19 45254599 45254599 C A BCL3 Missense_Mutation p.D124E 0.19 tolerated(0.14) benign(0.376) TCGA-RD-A8MV-01 19 52937309 52937309 G T ZNF534 Missense_Mutation p.E39D 0.11 deleterious(0) probably_damaging(0.918) TCGA-RD-A8MV-01 19 58639189 58639189 C T ZNF329 3'UTR 0.07 TCGA-RD-A8MV-01 1 11291018 11291018 C A MTOR Missense_Mutation p.V915F 0.23 tolerated(0.08) benign(0.255) TCGA-RD-A8MV-01 1 158812118 158812118 G A MNDA Missense_Mutation p.V59I 0.14 tolerated(0.19) benign(0.002) TCGA-RD-A8MV-01 1 161953725 161953725 G A OLFML2B Missense_Mutation p.R665C 0.37 deleterious(0) probably_damaging(0.999) TCGA-RD-A8MV-01 1 166039886 166039886 G T FAM78B Silent p.G126G 0.11 TCGA-RD-A8MV-01 1 166974588 166974588 C T MAEL Nonsense_Mutation p.R267* 0.07 TCGA-RD-A8MV-01 1 175996733 175996733 T G RFWD2 Missense_Mutation p.R568S 0.08 tolerated(1) benign(0.086) TCGA-RD-A8MV-01 1 186084516 186084516 T G HMCN1 Missense_Mutation p.L3844R 0.33 probably_damaging(0.999) TCGA-RD-A8MV-01 1 26515839 26515839 C T CNKSR1 Missense_Mutation p.R648C 0.16 deleterious(0) probably_damaging(0.964) TCGA-RD-A8MV-01 20 23856811 23856811 C A CST5 3'UTR 0.28 TCGA-RD-A8MV-01 20 31692647 31692647 T A BPIFB4 Missense_Mutation p.I571N 0.08 deleterious(0) possibly_damaging(0.774) TCGA-RD-A8MV-01 21 10862800 10862800 G C IGHV1OR21-1 Missense_Mutation p.K32N 0.05 deleterious(0.02) possibly_damaging(0.719) TCGA-RD-A8MV-01 22 17488876 17488876 G A GAB4 Silent p.S43S 0.40 TCGA-RD-A8MV-01 22 43821167 43821167 C A MPPED1 Missense_Mutation p.T59N 0.12 tolerated(0.36) possibly_damaging(0.783) TCGA-RD-A8MV-01 2 170031820 170031820 G A LRP2 Missense_Mutation p.R3551C 0.10 probably_damaging(1) TCGA-RD-A8MV-01 2 177017489 177017489 G A HOXD4 Missense_Mutation p.R196H 0.13 deleterious(0) probably_damaging(1) TCGA-RD-A8MV-01 2 207173829 207173829 T C ZDBF2 Missense_Mutation p.V1526A 0.16 deleterious(0.02) benign(0.002) TCGA-RD-A8MV-01 2 21230875 21230875 A C APOB Silent p.T2955T 0.11 TCGA-RD-A8MV-01 2 27465798 27465798 G A CAD Missense_Mutation p.R2146Q 0.10 deleterious(0) probably_damaging(0.997) TCGA-RD-A8MV-01 3 100963269 100963269 C G IMPG2 Missense_Mutation p.D636H 0.21 tolerated(0.09) benign(0.195) TCGA-RD-A8MV-01 3 113374703 113374703 G A KIAA2018 Silent p.N1942N 0.10 TCGA-RD-A8MV-01 3 133358903 133358903 C T TOPBP1 Nonsense_Mutation p.W711* 0.10 TCGA-RD-A8MV-01 3 151055982 151055982 G A P2RY12 Missense_Mutation p.R218W 0.05 deleterious(0) possibly_damaging(0.713) TCGA-RD-A8MV-01 3 173997382 173997382 A C NLGN1 Missense_Mutation p.N531H 0.16 deleterious(0.01) probably_damaging(0.995) TCGA-RD-A8MV-01 3 178560470 178560470 T G KCNMB2 Missense_Mutation p.N151K 0.12 deleterious(0.01) benign(0.371) TCGA-RD-A8MV-01 3 25835766 25835766 G - OXSM Frame_Shift_Del p.G388Efs*13 0.15 TCGA-RD-A8MV-01 4 185329386 185329386 C - IRF2 Frame_Shift_Del p.S152Mfs*10 0.29 TCGA-RD-A8MV-01 4 5633573 5633573 C T EVC2 Missense_Mutation p.E553K 0.06 deleterious(0) possibly_damaging(0.612) TCGA-RD-A8MV-01 4 88533545 88533545 A C DSPP Missense_Mutation p.Q69H 0.13 probably_damaging(0.99) TCGA-RD-A8MV-01 4 89649875 89649875 C T FAM13A Intron 0.12 TCGA-RD-A8MV-01 5 139917030 139917030 C T ANKHD1 Nonsense_Mutation p.R2362* 0.17 TCGA-RD-A8MV-01 5 140751305 140751305 C T PCDHGB3 Silent p.N448N 0.15 TCGA-RD-A8MV-01 5 140755021 140755021 C A PCDHGA6 Nonsense_Mutation p.Y457* 0.07 TCGA-RD-A8MV-01 5 5182409 5182409 C T ADAMTS16 Missense_Mutation p.R252C 0.12 deleterious(0.03) probably_damaging(0.983) TCGA-RD-A8MV-01 5 79375728 79375728 G A THBS4 Missense_Mutation p.A838T 0.17 deleterious(0.02) probably_damaging(0.966) TCGA-RD-A8MV-01 6 35773618 35773618 G A LHFPL5 Silent p.P57P 0.09 TCGA-RD-A8MV-01 6 41705512 41705514 TGA - PGC In_Frame_Del p.I323del 0.29 TCGA-RD-A8MV-01 6 62995777 62995777 C T KHDRBS2 Missense_Mutation p.R26H 0.17 deleterious(0) probably_damaging(0.987) TCGA-RD-A8MV-01 7 114270047 114270047 A G FOXP2 Missense_Mutation p.K220R 0.06 tolerated(0.12) unknown(0) TCGA-RD-A8MV-01 7 128486499 128486499 G A FLNC Missense_Mutation p.R1370Q 0.14 tolerated(0.57) benign(0.009) TCGA-RD-A8MV-01 7 140111699 140111699 A G RAB19 Missense_Mutation p.Q76R 0.22 deleterious(0) probably_damaging(1) TCGA-RD-A8MV-01 7 38725660 38725660 G A FAM183B 5'UTR 0.14 TCGA-RD-A8MV-01 7 84651728 84651728 C T SEMA3D Missense_Mutation p.D465N 0.04 deleterious(0.05) benign(0.047) TCGA-RD-A8MV-01 7 92163998 92163998 T C RBM48 Missense_Mutation p.L244S 0.12 tolerated(0.58) benign(0.014) TCGA-RD-A8MV-01 8 90782093 90782093 A C RIPK2 Missense_Mutation p.M193L 0.26 tolerated(0.27) possibly_damaging(0.734) TCGA-RD-A8MV-01 X 128691919 128691919 T - OCRL Frame_Shift_Del p.S146Qfs*13 0.16 TCGA-RD-A8MV-01 X 139865800 139865800 C A CDR1 Silent p.L244L 0.27 TCGA-RD-A8MW-01 10 105151963 105151963 C A USMG5 Silent p.V55V 0.12 TCGA-RD-A8MW-01 10 116307527 116307527 C T ABLIM1 Missense_Mutation p.G228S 0.42 deleterious(0) probably_damaging(0.999) TCGA-RD-A8MW-01 10 124800822 124800822 G C ACADSB Missense_Mutation p.G203A 0.10 deleterious(0.01) probably_damaging(1) TCGA-RD-A8MW-01 11 102395755 102395755 C T MMP7 Silent p.T175T 0.13 TCGA-RD-A8MW-01 11 108044306 108044306 C G NPAT Missense_Mutation p.E469Q 0.19 tolerated(0.12) possibly_damaging(0.882) TCGA-RD-A8MW-01 11 118925960 118925960 C T HYOU1 Missense_Mutation p.R119H 0.06 deleterious(0.04) benign(0.235) TCGA-RD-A8MW-01 11 55322128 55322128 T C OR4C15 Silent p.L116L 0.14 TCGA-RD-A8MW-01 11 57460088 57460088 G A ZDHHC5 Silent p.T222T 0.10 TCGA-RD-A8MW-01 11 59577343 59577343 C G MRPL16 Missense_Mutation p.V36L 0.48 tolerated(0.14) benign(0.004) TCGA-RD-A8MW-01 11 66114479 66114479 G A B3GNT1 Missense_Mutation p.R180W 0.09 deleterious(0.01) probably_damaging(0.918) TCGA-RD-A8MW-01 12 131359214 131359214 T C RAN Missense_Mutation p.V124A 0.23 tolerated(0.1) benign(0.055) TCGA-RD-A8MW-01 12 1749057 1749057 G A WNT5B Missense_Mutation p.R179Q 0.09 deleterious(0.04) benign(0.436) TCGA-RD-A8MW-01 12 22065906 22065906 C T ABCC9 Missense_Mutation p.R304H 0.05 deleterious(0) probably_damaging(0.983) TCGA-RD-A8MW-01 12 23716293 23716293 C G SOX5 Missense_Mutation p.A463P 0.12 deleterious(0.02) probably_damaging(0.998) TCGA-RD-A8MW-01 12 3659251 3659251 G T PRMT8 Silent p.V137V 0.08 TCGA-RD-A8MW-01 12 40715968 40715968 C T LRRK2 Missense_Mutation p.P1768S 0.07 deleterious(0) probably_damaging(0.999) TCGA-RD-A8MW-01 12 78574715 78574715 A G NAV3 Missense_Mutation p.K1839R 0.10 tolerated(0.42) probably_damaging(0.998) TCGA-RD-A8MW-01 13 32776595 32776595 G C FRY Missense_Mutation p.V1317L 0.15 tolerated(0.53) benign(0.025) TCGA-RD-A8MW-01 13 39262883 39262883 T G FREM2 Missense_Mutation p.L468V 0.08 deleterious(0.02) probably_damaging(0.934) TCGA-RD-A8MW-01 13 77671583 77671583 C - MYCBP2 Frame_Shift_Del p.E3198Rfs*17 0.14 TCGA-RD-A8MW-01 13 84455654 84455654 G A SLITRK1 5'UTR 0.06 TCGA-RD-A8MW-01 14 106322069 106322069 G A IGHM Silent p.H85H 0.22 TCGA-RD-A8MW-01 14 22386477 22386477 G A TRAV13-2 Silent p.L15L 0.29 TCGA-RD-A8MW-01 14 94079428 94079431 AAGT - UNC79 Splice_Site p.X1170_splice 0.14 TCGA-RD-A8MW-01 15 22382870 22382870 C T OR4N4 Missense_Mutation p.S133L 0.05 tolerated(0.34) benign(0.003) TCGA-RD-A8MW-01 15 32976787 32976787 G A SCG5 Missense_Mutation p.D136N 0.24 tolerated(0.81) benign(0.269) TCGA-RD-A8MW-01 15 55976123 55976123 G C PRTG Missense_Mutation p.S135C 0.18 deleterious(0) benign(0.366) TCGA-RD-A8MW-01 16 1859795 1859795 G A HAGH Silent p.L263L 0.13 TCGA-RD-A8MW-01 16 22268122 22268122 C G EEF2K Silent p.P224P 0.13 TCGA-RD-A8MW-01 16 48173093 48173093 A T ABCC12 Missense_Mutation p.V271D 0.12 deleterious(0) possibly_damaging(0.633) TCGA-RD-A8MW-01 16 57504920 57504920 G A POLR2C Silent p.L239L 0.13 TCGA-RD-A8MW-01 16 77465418 77465418 G A ADAMTS18 Missense_Mutation p.A90V 0.21 tolerated(0.29) benign(0.009) TCGA-RD-A8MW-01 17 15907172 15907172 A T TTC19 Missense_Mutation p.S164C 0.21 deleterious(0) probably_damaging(0.947) TCGA-RD-A8MW-01 17 17398964 17398964 G T RASD1 Missense_Mutation p.N107K 0.54 deleterious(0.01) benign(0.145) TCGA-RD-A8MW-01 17 62851994 62851994 C T LRRC37A3 Missense_Mutation p.R1608Q 0.13 deleterious(0.01) possibly_damaging(0.813) TCGA-RD-A8MW-01 17 7077311 7077311 C A ASGR1 Missense_Mutation p.V224L 0.07 deleterious(0) benign(0.318) TCGA-RD-A8MW-01 17 7577570 7577570 C T TP53 Missense_Mutation p.M237I 0.23 deleterious(0) probably_damaging(0.997) TCGA-RD-A8MW-01 17 76497386 76497386 C T DNAH17 Missense_Mutation p.R1774Q 0.29 probably_damaging(0.997) TCGA-RD-A8MW-01 18 61569114 61569114 T C SERPINB2 Missense_Mutation p.S226P 0.05 deleterious(0.03) possibly_damaging(0.485) TCGA-RD-A8MW-01 19 34302362 34302362 G A KCTD15 Missense_Mutation p.V200I 0.29 tolerated(0.08) benign(0.029) TCGA-RD-A8MW-01 19 48715026 48715027 TG A CARD8 Frame_Shift_Del p.R519Efs*111 0.24 TCGA-RD-A8MW-01 19 53994551 53994551 C G ZNF813 Missense_Mutation p.F355L 0.19 deleterious(0) benign(0.102) TCGA-RD-A8MW-01 19 5737214 5737214 G T CATSPERD Missense_Mutation p.V153L 0.09 tolerated(1) benign(0.004) TCGA-RD-A8MW-01 19 58929027 58929027 C G ZNF584 Missense_Mutation p.S381C 0.16 deleterious(0) possibly_damaging(0.721) TCGA-RD-A8MW-01 19 7998860 7998860 T C TIMM44 Missense_Mutation p.D191G 0.10 tolerated(0.13) benign(0.002) TCGA-RD-A8MW-01 1 142713310 142713310 C G RP11-417J8.6 RNA 0.13 TCGA-RD-A8MW-01 1 207890962 207890962 G A CR1L Missense_Mutation p.R523H 0.07 tolerated(0.52) benign(0.142) TCGA-RD-A8MW-01 1 228482599 228482599 G T OBSCN Missense_Mutation p.E4267D 0.31 possibly_damaging(0.68) TCGA-RD-A8MW-01 1 57170027 57170027 A G PRKAA2 Missense_Mutation p.K391R 0.17 tolerated(0.54) benign(0.007) TCGA-RD-A8MW-01 1 70489009 70489009 G T LRRC7 Missense_Mutation p.L544F 0.18 tolerated(0.46) benign(0.049) TCGA-RD-A8MW-01 20 50406647 50406647 T C SALL4 Missense_Mutation p.N792S 0.57 tolerated(0.05) benign(0.075) TCGA-RD-A8MW-01 20 52188377 52188377 G A ZNF217 Missense_Mutation p.S1018L 0.08 tolerated(0.16) probably_damaging(0.999) TCGA-RD-A8MW-01 22 50277672 50277672 G A ZBED4 Nonsense_Mutation p.W121* 0.16 TCGA-RD-A8MW-01 2 105959479 105959479 G A C2orf49 Silent p.S147S 0.32 TCGA-RD-A8MW-01 2 138208447 138208447 C G THSD7B Missense_Mutation p.P998A 0.09 deleterious(0) unknown(0) TCGA-RD-A8MW-01 2 144381801 144381801 C A ARHGAP15 Missense_Mutation p.P368H 0.08 deleterious(0) probably_damaging(1) TCGA-RD-A8MW-01 2 27247015 27247015 T A MAPRE3 Missense_Mutation p.F107I 0.28 deleterious(0) probably_damaging(0.991) TCGA-RD-A8MW-01 2 33413915 33413915 A G LTBP1 Silent p.S566S 0.22 TCGA-RD-A8MW-01 2 73717326 73717327 - G ALMS1 Frame_Shift_Ins p.V2748Gfs*3 0.24 TCGA-RD-A8MW-01 2 90044261 90044261 T G IGKV2D-24 Missense_Mutation p.L61R 0.08 deleterious(0) benign(0.169) TCGA-RD-A8MW-01 2 96781709 96781709 C A ADRA2B Silent p.L60L 0.12 TCGA-RD-A8MW-01 3 113172591 113172591 C A SPICE1 Missense_Mutation p.V622F 0.27 deleterious(0) possibly_damaging(0.76) TCGA-RD-A8MW-01 3 137803091 137803091 T A DZIP1L Missense_Mutation p.Q356L 0.75 deleterious(0.01) benign(0.298) TCGA-RD-A8MW-01 3 38010946 38010946 A G CTDSPL Intron 0.29 TCGA-RD-A8MW-01 3 77626718 77626718 G A ROBO2 Missense_Mutation p.D777N 0.08 deleterious(0.01) possibly_damaging(0.822) TCGA-RD-A8MW-01 4 126336569 126336569 A C FAT4 Missense_Mutation p.N2151H 0.13 possibly_damaging(0.498) TCGA-RD-A8MW-01 4 55565832 55565832 C G KIT Missense_Mutation p.A219G 0.10 tolerated(0.38) benign(0.003) TCGA-RD-A8MW-01 4 68964691 68964691 T C TMPRSS11F Missense_Mutation p.D26G 0.25 tolerated(0.17) benign(0.002) TCGA-RD-A8MW-01 4 71698977 71698977 G T GRSF1 Silent p.R176R 0.15 TCGA-RD-A8MW-01 5 140215942 140215942 G A PCDHA7 Silent p.S658S 0.26 TCGA-RD-A8MW-01 5 140782924 140782924 C A PCDHGA9 Silent p.A135A 0.10 TCGA-RD-A8MW-01 5 142662237 142662237 A C NR3C1 Missense_Mutation p.Y694D 0.32 deleterious(0) probably_damaging(1) TCGA-RD-A8MW-01 5 143853557 143853557 C A KCTD16 Silent p.L389L 0.19 TCGA-RD-A8MW-01 5 148699261 148699261 C T AFAP1L1 Silent p.S532S 0.29 TCGA-RD-A8MW-01 6 101092001 101092001 T G ASCC3 Missense_Mutation p.H1213P 0.08 deleterious(0) probably_damaging(0.997) TCGA-RD-A8MW-01 6 134210826 134210826 G - TCF21 Frame_Shift_Del p.A98Pfs*34 0.10 TCGA-RD-A8MW-01 6 152614777 152614777 G A SYNE1 Silent p.L5986L 0.08 TCGA-RD-A8MW-01 6 160913951 160913951 C T LPAL2 RNA 0.19 TCGA-RD-A8MW-01 6 27879141 27879141 C A OR2B2 Missense_Mutation p.M319I 0.09 deleterious_low_confidence(0.05) benign(0) TCGA-RD-A8MW-01 6 41533495 41533495 C T FOXP4 5'UTR 0.06 TCGA-RD-A8MW-01 6 44271076 44271076 C T AARS2 Missense_Mutation p.E698K 0.08 deleterious(0.03) benign(0.118) TCGA-RD-A8MW-01 6 56401712 56401712 G C DST Silent p.P2922P 0.29 TCGA-RD-A8MW-01 7 114304485 114304485 C T FOXP2 Missense_Mutation p.P691L 0.07 tolerated(0.17) benign(0.003) TCGA-RD-A8MW-01 7 128492694 128492694 C T FLNC Silent p.D1964D 0.16 TCGA-RD-A8MW-01 7 131833360 131833360 T - PLXNA4 Frame_Shift_Del p.D1569Afs*13 0.09 TCGA-RD-A8MW-01 7 47882700 47882700 C T PKD1L1 Missense_Mutation p.A1769T 0.18 tolerated(1) benign(0.004) TCGA-RD-A8MW-01 7 83098560 83098560 G A SEMA3E Missense_Mutation p.A112V 0.05 tolerated(0.33) benign(0.006) TCGA-RD-A8MW-01 7 99631375 99631375 T G ZKSCAN1 Missense_Mutation p.L416R 0.73 tolerated(0.88) benign(0.372) TCGA-RD-A8MW-01 7 99914756 99914756 C T SPDYE3 Missense_Mutation p.R442C 0.12 deleterious(0.04) possibly_damaging(0.455) TCGA-RD-A8MW-01 8 104432650 104432650 G C DCAF13 Missense_Mutation p.E229Q 0.21 tolerated(0.13) benign(0.006) TCGA-RD-A8MW-01 8 133622429 133622429 C A LRRC6 Missense_Mutation p.V375F 0.13 deleterious(0) benign(0.211) TCGA-RD-A8MW-01 8 49833844 49833844 G A SNAI2 5'UTR 0.14 TCGA-RD-A8MW-01 8 91094290 91094290 G A CALB1 Silent p.I40I 0.07 TCGA-RD-A8MW-01 9 125512558 125512558 C G OR1L6 Silent p.L144L 0.16 TCGA-RD-A8MW-01 9 33463284 33463284 C T NOL6 Silent p.L1050L 0.24 TCGA-RD-A8MW-01 9 96312894 96312894 G A FAM120A Missense_Mutation p.R732Q 0.13 tolerated(0.21) benign(0.119) TCGA-RD-A8MW-01 X 107167699 107167699 G A MID2 Missense_Mutation p.S521N 0.33 tolerated(0.18) probably_damaging(0.909) TCGA-RD-A8MW-01 X 29973586 29973586 T G IL1RAPL1 Silent p.P580P 0.19 TCGA-RD-A8MW-01 X 65259789 65259789 A T VSIG4 Missense_Mutation p.Y18N 0.30 deleterious(0.03) possibly_damaging(0.564) TCGA-RD-A8N0-01 3 9543963 9543963 G A LHFPL4 Missense_Mutation p.R226W 0.08 deleterious(0.01) benign(0.332) TCGA-RD-A8N0-01 8 70967556 70967556 G T PRDM14 Nonsense_Mutation p.Y489* 0.07 TCGA-RD-A8N1-01 10 112356243 112356243 A C SMC3 Missense_Mutation p.K684T 0.29 tolerated(0.38) benign(0.224) TCGA-RD-A8N1-01 10 37508708 37508708 T C ANKRD30A Silent p.F1300F 0.24 TCGA-RD-A8N1-01 10 50121861 50121861 G A LRRC18 Missense_Mutation p.P114S 0.10 deleterious(0.03) probably_damaging(0.977) TCGA-RD-A8N1-01 10 73406373 73406373 T C CDH23 Missense_Mutation p.L75P 0.06 tolerated(0.29) possibly_damaging(0.809) TCGA-RD-A8N1-01 10 74890669 74890669 C G NUDT13 3'UTR 0.20 TCGA-RD-A8N1-01 10 84625164 84625164 T C NRG3 Intron 0.10 TCGA-RD-A8N1-01 10 95399898 95399898 G A PDE6C Silent p.E518E 0.11 TCGA-RD-A8N1-01 11 22364894 22364894 T C SLC17A6 Silent p.S147S 0.07 TCGA-RD-A8N1-01 11 22833595 22833595 A G GAS2 3'UTR 0.42 TCGA-RD-A8N1-01 11 32118798 32118798 C T RCN1 Silent p.A121A 0.14 TCGA-RD-A8N1-01 11 62300246 62300246 A G AHNAK Missense_Mutation p.L548P 0.12 probably_damaging(0.991) TCGA-RD-A8N1-01 12 111321925 111321925 G C CCDC63 Missense_Mutation p.E315D 0.31 tolerated(0.12) benign(0.161) TCGA-RD-A8N1-01 12 114386665 114386665 C A RBM19 Missense_Mutation p.D417Y 0.24 deleterious(0) probably_damaging(0.988) TCGA-RD-A8N1-01 12 124293406 124293406 T C DNAH10 Missense_Mutation p.I899T 0.24 benign(0.004) TCGA-RD-A8N1-01 12 52777374 52777374 T G KRT84 Missense_Mutation p.K252T 0.11 deleterious(0) probably_damaging(0.998) TCGA-RD-A8N1-01 12 57110641 57110641 G C NACA Intron 0.24 TCGA-RD-A8N1-01 12 64377806 64377806 G C SRGAP1 Silent p.L49L 0.28 TCGA-RD-A8N1-01 12 7647976 7647976 C T CD163 Missense_Mutation p.R374K 0.13 deleterious(0.03) benign(0.047) TCGA-RD-A8N1-01 13 114325845 114325845 C T GRK1 Missense_Mutation p.P287S 0.07 tolerated(0.07) probably_damaging(1) TCGA-RD-A8N1-01 13 47260139 47260139 T C LRCH1 Missense_Mutation p.L262P 0.07 deleterious(0.03) probably_damaging(0.991) TCGA-RD-A8N1-01 13 58299300 58299300 C G PCDH17 Missense_Mutation p.L1118V 0.11 tolerated_low_confidence(0.13) probably_damaging(0.978) TCGA-RD-A8N1-01 14 21458683 21458683 G C METTL17 Missense_Mutation p.R97T 0.17 deleterious(0) probably_damaging(1) TCGA-RD-A8N1-01 14 33015655 33015655 C G AKAP6 Nonsense_Mutation p.S599* 0.24 TCGA-RD-A8N1-01 14 92157898 92157898 A C CATSPERB Missense_Mutation p.F278C 0.24 deleterious(0) possibly_damaging(0.821) TCGA-RD-A8N1-01 14 95108218 95108218 G T SERPINA13P RNA 0.09 TCGA-RD-A8N1-01 15 23890297 23890297 T G MAGEL2 Missense_Mutation p.T262P 0.19 deleterious(0.01) benign(0.092) TCGA-RD-A8N1-01 15 40594685 40594685 C T PLCB2 Silent p.K119K 0.26 TCGA-RD-A8N1-01 15 51830521 51830521 G A DMXL2 Nonsense_Mutation p.R412* 0.18 TCGA-RD-A8N1-01 15 55652558 55652558 G A CCPG1 Silent p.G471G 0.14 TCGA-RD-A8N1-01 16 12009727 12009727 C T GSPT1 5'UTR 0.17 TCGA-RD-A8N1-01 16 2836110 2836110 G T PRSS33 Missense_Mutation p.T20N 0.19 deleterious(0.04) benign(0.018) TCGA-RD-A8N1-01 16 29809731 29809731 G A KIF22 Silent p.Q101Q 0.08 TCGA-RD-A8N1-01 16 61687640 61687640 A G CDH8 Missense_Mutation p.S758P 0.32 deleterious(0) probably_damaging(0.995) TCGA-RD-A8N1-01 17 29560174 29560174 T G NF1 Missense_Mutation p.D1217E 0.14 tolerated(0.17) probably_damaging(0.97) TCGA-RD-A8N1-01 17 39780605 39780605 C T KRT17 Missense_Mutation p.G53R 0.14 tolerated(0.14) benign(0) TCGA-RD-A8N1-01 17 685799 685799 G A RNMTL1 Missense_Mutation p.A61T 0.24 tolerated(0.53) benign(0.001) TCGA-RD-A8N1-01 17 7578402 7578402 G C TP53 Missense_Mutation p.C176W 0.20 deleterious(0) probably_damaging(0.999) TCGA-RD-A8N1-01 17 79827081 79827081 T C ARHGDIA Missense_Mutation p.Y128C 0.13 tolerated(0.24) probably_damaging(1) TCGA-RD-A8N1-01 17 9490064 9490064 T G WDR16 Missense_Mutation p.L107R 0.30 deleterious(0) probably_damaging(0.997) TCGA-RD-A8N1-01 19 14162969 14162969 C G IL27RA Missense_Mutation p.P593R 0.27 tolerated(0.23) possibly_damaging(0.643) TCGA-RD-A8N1-01 19 15791309 15791309 A C CYP4F12 Missense_Mutation p.K169Q 0.10 tolerated(0.68) benign(0.006) TCGA-RD-A8N1-01 19 18304698 18304698 G A MPV17L2 Missense_Mutation p.S71N 0.19 deleterious(0.01) possibly_damaging(0.603) TCGA-RD-A8N1-01 19 19905881 19905881 A G ZNF506 Missense_Mutation p.L272P 0.07 deleterious(0) probably_damaging(0.999) TCGA-RD-A8N1-01 19 50157632 50157632 G C SCAF1 Missense_Mutation p.E1115Q 0.17 possibly_damaging(0.607) TCGA-RD-A8N1-01 19 51021981 51021981 A C LRRC4B Missense_Mutation p.V330G 0.24 deleterious(0) benign(0.066) TCGA-RD-A8N1-01 19 58385004 58385004 A C ZNF814 Missense_Mutation p.F585C 0.20 deleterious(0) possibly_damaging(0.547) TCGA-RD-A8N1-01 19 7974998 7974998 T C MAP2K7 Missense_Mutation p.L106P 0.28 deleterious(0) probably_damaging(0.996) TCGA-RD-A8N1-01 1 101427438 101427438 C G SLC30A7 Silent p.P299P 0.11 TCGA-RD-A8N1-01 1 12144546 12144546 A T TNFRSF8 Missense_Mutation p.H30L 0.11 tolerated(0.3) benign(0) TCGA-RD-A8N1-01 1 143767872 143767872 C T PPIAL4G 5'UTR 0.12 TCGA-RD-A8N1-01 1 154402967 154402967 G A IL6R Missense_Mutation p.E115K 0.30 deleterious(0) probably_damaging(0.966) TCGA-RD-A8N1-01 1 157667486 157667486 A G FCRL3 Silent p.I174I 0.09 TCGA-RD-A8N1-01 1 160160579 160160579 C T CASQ1 Missense_Mutation p.P13L 0.20 tolerated_low_confidence(0.08) possibly_damaging(0.618) TCGA-RD-A8N1-01 1 201016743 201016743 G T CACNA1S Missense_Mutation p.Q1485K 0.09 tolerated(0.07) benign(0.2) TCGA-RD-A8N1-01 1 204951123 204951123 C T NFASC Silent p.S815S 0.21 TCGA-RD-A8N1-01 1 206145551 206145551 T C FAM72A Missense_Mutation p.Y110H 0.12 tolerated(0.51) possibly_damaging(0.51) TCGA-RD-A8N1-01 1 21889632 21889632 C A ALPL Missense_Mutation p.D109E 0.10 deleterious(0.03) probably_damaging(0.995) TCGA-RD-A8N1-01 1 248845515 248845515 G C OR14I1 Missense_Mutation p.L31V 0.15 tolerated(0.67) benign(0.145) TCGA-RD-A8N1-01 1 36028115 36028115 C T NCDN Silent p.V422V 0.19 TCGA-RD-A8N1-01 1 38323317 38323317 C G MTF1 Missense_Mutation p.S5T 0.15 tolerated(0.27) benign(0.021) TCGA-RD-A8N1-01 1 53569215 53569215 A G SLC1A7 Missense_Mutation p.V167A 0.30 tolerated(0.07) benign(0.007) TCGA-RD-A8N1-01 1 67195012 67195012 C G SGIP1 Missense_Mutation p.A603G 0.23 deleterious(0.01) benign(0.063) TCGA-RD-A8N1-01 1 67591567 67591567 C A C1orf141 Missense_Mutation p.R34I 0.17 tolerated(0.1) probably_damaging(0.975) TCGA-RD-A8N1-01 1 70541927 70541927 A T LRRC7 Silent p.G1428G 0.14 TCGA-RD-A8N1-01 1 78401560 78401560 T A NEXN Missense_Mutation p.I435N 0.06 deleterious(0) benign(0.439) TCGA-RD-A8N1-01 20 10629243 10629243 C T JAG1 Missense_Mutation p.R508K 0.16 deleterious(0.01) benign(0.064) TCGA-RD-A8N1-01 20 30729330 30729330 A G TM9SF4 Missense_Mutation p.N87S 0.06 tolerated(0.08) possibly_damaging(0.859) TCGA-RD-A8N1-01 20 31672780 31672780 C T BPIFB4 Missense_Mutation p.R254C 0.31 tolerated(0.08) benign(0.013) TCGA-RD-A8N1-01 20 32379130 32379130 A G ZNF341 Missense_Mutation p.K784R 0.14 tolerated_low_confidence(0.1) possibly_damaging(0.907) TCGA-RD-A8N1-01 20 40730850 40730850 C A PTPRT Missense_Mutation p.D1210Y 0.11 deleterious(0) probably_damaging(0.967) TCGA-RD-A8N1-01 20 47266698 47266698 G T PREX1 Missense_Mutation p.A955D 0.17 deleterious(0) probably_damaging(0.917) TCGA-RD-A8N1-01 20 57771027 57771027 G C ZNF831 Missense_Mutation p.S1281T 0.10 tolerated(0.05) benign(0.094) TCGA-RD-A8N1-01 2 102956661 102956662 - A IL1RL1 Frame_Shift_Ins p.N128Kfs*10 0.17 TCGA-RD-A8N1-01 2 135884172 135884172 G T RAB3GAP1 Missense_Mutation p.A307S 0.22 tolerated(0.08) benign(0.171) TCGA-RD-A8N1-01 2 16746936 16746936 C A FAM49A Missense_Mutation p.G57V 0.08 deleterious(0) probably_damaging(1) TCGA-RD-A8N1-01 2 192550410 192550410 A G NABP1 Silent p.P177P 0.08 TCGA-RD-A8N1-01 2 196581722 196581722 C T SLC39A10 Silent p.L686L 0.10 TCGA-RD-A8N1-01 2 201521631 201521631 G A AOX1 Missense_Mutation p.G1048R 0.12 deleterious(0.01) probably_damaging(1) TCGA-RD-A8N1-01 2 21252826 21252826 C A APOB Nonsense_Mutation p.E472* 0.10 TCGA-RD-A8N1-01 2 225729645 225729645 T C DOCK10 Missense_Mutation p.R473G 0.10 tolerated(0.41) benign(0.002) TCGA-RD-A8N1-01 2 230231614 230231614 C A DNER Missense_Mutation p.A693S 0.13 tolerated(0.16) benign(0.098) TCGA-RD-A8N1-01 2 28117509 28117509 T A BRE Missense_Mutation p.L29Q 0.26 deleterious(0.01) possibly_damaging(0.906) TCGA-RD-A8N1-01 2 32390938 32390938 G T SLC30A6 5'UTR 0.08 TCGA-RD-A8N1-01 2 37480264 37480264 C G PRKD3 3'UTR 0.06 TCGA-RD-A8N1-01 2 60687786 60687786 C G BCL11A Missense_Mutation p.C754S 0.06 deleterious(0.02) benign(0.026) TCGA-RD-A8N1-01 2 7179914 7179914 A T RNF144A 3'UTR 0.27 TCGA-RD-A8N1-01 3 133583487 133583487 C A RAB6B Splice_Site p.X24_splice 0.09 TCGA-RD-A8N1-01 3 140401600 140401600 G A TRIM42 Missense_Mutation p.R213H 0.07 deleterious(0.01) benign(0.01) TCGA-RD-A8N1-01 3 142840711 142840711 G A CHST2 Silent p.E351E 0.40 TCGA-RD-A8N1-01 3 3139960 3139960 A G IL5RA Missense_Mutation p.S128P 0.13 deleterious(0) probably_damaging(0.974) TCGA-RD-A8N1-01 3 98188573 98188573 A C OR5K1 Silent p.T51T 0.09 TCGA-RD-A8N1-01 4 151023865 151023865 G C DCLK2 Missense_Mutation p.K219N 0.22 deleterious(0) probably_damaging(1) TCGA-RD-A8N1-01 4 158282238 158282238 G A GRIA2 Intron 0.14 TCGA-RD-A8N1-01 4 25849078 25849078 C T SEL1L3 Missense_Mutation p.E191K 0.26 tolerated(0.63) benign(0.003) TCGA-RD-A8N1-01 4 57796152 57796152 C A REST Missense_Mutation p.F376L 0.12 tolerated(0.27) probably_damaging(0.999) TCGA-RD-A8N1-01 4 71464084 71464084 G T AMBN Missense_Mutation p.Q49H 0.14 tolerated(0.06) possibly_damaging(0.565) TCGA-RD-A8N1-01 4 7725535 7725535 G A SORCS2 Missense_Mutation p.G846S 0.20 deleterious(0) probably_damaging(1) TCGA-RD-A8N1-01 5 137522893 137522893 G T KIF20A Missense_Mutation p.G822C 0.13 deleterious(0.02) possibly_damaging(0.572) TCGA-RD-A8N1-01 5 137589465 137589465 G A GFRA3 Silent p.N338N 0.20 TCGA-RD-A8N1-01 5 140307345 140307345 A T PCDHAC1 Missense_Mutation p.S290C 0.20 deleterious(0) probably_damaging(0.941) TCGA-RD-A8N1-01 5 140605307 140605307 A T PCDHB14 Missense_Mutation p.T744S 0.15 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-RD-A8N1-01 5 140802493 140802493 G A PCDHGA11 Missense_Mutation p.A567T 0.12 tolerated_low_confidence(0.77) benign(0.01) TCGA-RD-A8N1-01 5 41862783 41862783 C - OXCT1 Frame_Shift_Del p.V50* 0.13 TCGA-RD-A8N1-01 5 54696250 54696250 G C SKIV2L2 Splice_Site p.X827_splice 0.11 TCGA-RD-A8N1-01 5 71622512 71622512 A G PTCD2 Silent p.L98L 0.05 TCGA-RD-A8N1-01 6 109415048 109415048 G A SESN1 Missense_Mutation p.P77S 0.07 deleterious(0) benign(0.342) TCGA-RD-A8N1-01 6 17987359 17987359 G T KIF13A Silent p.T24T 0.14 TCGA-RD-A8N1-01 6 26250766 26250766 G C HIST1H3F Missense_Mutation p.T23S 0.13 tolerated_low_confidence(0.09) benign(0) TCGA-RD-A8N1-01 6 33260019 33260019 G A RGL2 Nonsense_Mutation p.Q732* 0.33 TCGA-RD-A8N1-01 6 401656 401656 G A IRF4 Silent p.A326A 0.27 TCGA-RD-A8N1-01 6 90461202 90461202 T G MDN1 Missense_Mutation p.T1059P 0.09 probably_damaging(1) TCGA-RD-A8N1-01 7 100839102 100839102 G T MOGAT3 3'UTR 0.33 TCGA-RD-A8N1-01 7 30118217 30118217 G T PLEKHA8 Missense_Mutation p.R458S 0.18 deleterious(0) probably_damaging(0.99) TCGA-RD-A8N1-01 7 37927877 37927877 A G NME8 Splice_Site p.X416_splice 0.12 TCGA-RD-A8N1-01 7 38389026 38389026 C G TRGV5 Missense_Mutation p.S95T 0.13 tolerated(0.31) benign(0.22) TCGA-RD-A8N1-01 7 44797705 44797705 G C ZMIZ2 Missense_Mutation p.E271Q 0.08 tolerated(0.15) benign(0.014) TCGA-RD-A8N1-01 7 48311908 48311908 C A ABCA13 Missense_Mutation p.P882H 0.32 possibly_damaging(0.885) TCGA-RD-A8N1-01 7 57188321 57188321 T C ZNF479 Silent p.K267K 0.11 TCGA-RD-A8N1-01 7 99702536 99702536 C A AP4M1 Missense_Mutation p.L216I 0.06 tolerated(0.15) possibly_damaging(0.476) TCGA-RD-A8N1-01 8 10583693 10583693 G - SOX7 Frame_Shift_Del p.P293Rfs*30 0.29 TCGA-RD-A8N1-01 8 143993505 143993505 A G CYP11B2 Missense_Mutation p.L468P 0.14 deleterious(0) probably_damaging(1) TCGA-RD-A8N1-01 8 38153343 38153343 C G WHSC1L1 Missense_Mutation p.Q962H 0.18 deleterious(0) probably_damaging(1) TCGA-RD-A8N1-01 8 8749453 8749453 G A MFHAS1 Silent p.I372I 0.10 TCGA-RD-A8N1-01 9 114456104 114456104 G C C9orf84 Missense_Mutation p.P1083R 0.04 deleterious(0) probably_damaging(1) TCGA-RD-A8N1-01 9 120475563 120475563 G A TLR4 Missense_Mutation p.S386N 0.08 tolerated(0.14) benign(0.076) TCGA-RD-A8N1-01 9 136310093 136310093 G C ADAMTS13 Missense_Mutation p.E844Q 0.11 tolerated(0.57) benign(0.007) TCGA-RD-A8N1-01 9 32632567 32632567 T C TAF1L Missense_Mutation p.K1004R 0.11 deleterious(0.01) possibly_damaging(0.901) TCGA-RD-A8N1-01 9 84603903 84603903 A T SPATA31D1 Missense_Mutation p.N57I 0.11 tolerated(0.48) benign(0.009) TCGA-RD-A8N1-01 X 150912253 150912253 A T CNGA2 Silent p.R426R 0.33 TCGA-RD-A8N1-01 X 41026776 41026776 A G USP9X Missense_Mutation p.I790M 0.29 deleterious(0) probably_damaging(0.964) TCGA-RD-A8N1-01 X 71401599 71401599 A C PIN4 Missense_Mutation p.Q13H 0.29 deleterious_low_confidence(0.02) benign(0.07) TCGA-RD-A8N1-01 X 88008763 88008763 A T CPXCR1 Missense_Mutation p.K116N 0.28 tolerated(0.12) possibly_damaging(0.895) TCGA-RD-A8N1-01 X 96369921 96369921 G A DIAPH2 Missense_Mutation p.R849K 0.32 tolerated(0.17) probably_damaging(0.998) TCGA-RD-A8N2-01 15 42713331 42713331 C T ZNF106 Splice_Site p.X1793_splice 0.05 TCGA-RD-A8N2-01 6 158914622 158914622 G A TULP4 Missense_Mutation p.R550H 0.06 deleterious(0) possibly_damaging(0.621) TCGA-RD-A8N4-01 10 106166486 106166486 C T CCDC147 Missense_Mutation p.H731Y 0.08 deleterious(0) benign(0.205) TCGA-RD-A8N4-01 11 62289687 62289687 A G AHNAK Missense_Mutation p.F4068L 0.03 benign(0.124) TCGA-RD-A8N4-01 19 58231701 58231701 C T ZNF671 3'UTR 0.05 TCGA-RD-A8N4-01 1 35260834 35260834 C T GJA4 3'UTR 0.07 TCGA-RD-A8N4-01 1 78279468 78279468 C G FAM73A Silent p.T229T 0.04 TCGA-RD-A8N4-01 5 135207360 135207360 G A SLC25A48 Intron 0.09 TCGA-RD-A8N4-01 5 140181251 140181251 G A PCDHA3 Missense_Mutation p.A157T 0.05 deleterious_low_confidence(0) probably_damaging(1) TCGA-RD-A8N4-01 9 104449192 104449192 G A GRIN3A Silent p.C330C 0.05 TCGA-RD-A8N4-01 9 75784032 75784032 C G ANXA1 Missense_Mutation p.Q316E 0.03 deleterious(0.01) benign(0.129) TCGA-RD-A8N5-01 10 105812833 105812833 C T COL17A1 Missense_Mutation p.R632H 0.14 unknown(0) TCGA-RD-A8N5-01 10 50678710 50678710 C T ERCC6 Missense_Mutation p.S1099N 0.08 tolerated(0.45) benign(0.001) TCGA-RD-A8N5-01 10 93253221 93253221 A T HECTD2 Missense_Mutation p.S493C 0.09 tolerated(0.06) benign(0.049) TCGA-RD-A8N5-01 11 375479 375479 G A B4GALNT4 Missense_Mutation p.G268S 0.07 tolerated(0.34) possibly_damaging(0.894) TCGA-RD-A8N5-01 11 5537652 5537652 C T UBQLNL Missense_Mutation p.R7Q 0.10 tolerated(0.25) benign(0.019) TCGA-RD-A8N5-01 11 92887388 92887388 T C SLC36A4 Missense_Mutation p.I365V 0.10 tolerated(0.13) benign(0.07) TCGA-RD-A8N5-01 12 45173805 45173805 C T NELL2 Silent p.R162R 0.11 TCGA-RD-A8N5-01 13 103443678 103443678 A T KDELC1 Missense_Mutation p.S259T 0.04 deleterious(0) probably_damaging(0.999) TCGA-RD-A8N5-01 13 30805517 30805517 C T KATNAL1 Silent p.S273S 0.14 TCGA-RD-A8N5-01 13 39433723 39433723 A C FREM2 Missense_Mutation p.E2505D 0.09 tolerated(0.39) benign(0.007) TCGA-RD-A8N5-01 13 88329638 88329638 G T SLITRK5 Silent p.V665V 0.17 TCGA-RD-A8N5-01 14 23532236 23532236 A C ACIN1 Missense_Mutation p.S987A 0.05 benign(0.394) TCGA-RD-A8N5-01 16 23701193 23701193 C T PLK1 Missense_Mutation p.L541F 0.08 deleterious(0) possibly_damaging(0.885) TCGA-RD-A8N5-01 17 58756861 58756861 C T BCAS3 Missense_Mutation p.R15C 0.04 deleterious(0) probably_damaging(0.965) TCGA-RD-A8N5-01 19 10221461 10221461 G T PPAN Nonsense_Mutation p.E374* 0.08 TCGA-RD-A8N5-01 19 13428098 13428098 C A CACNA1A Missense_Mutation p.K461N 0.18 possibly_damaging(0.895) TCGA-RD-A8N5-01 19 21991216 21991216 T C ZNF43 Silent p.E541E 0.08 TCGA-RD-A8N5-01 19 39957335 39957335 G A SUPT5H Silent p.R329R 0.08 TCGA-RD-A8N5-01 19 44611545 44611545 C G ZNF224 Missense_Mutation p.T411R 0.11 tolerated(0.5) benign(0.192) TCGA-RD-A8N5-01 19 57889278 57889280 AGT - ZNF547 In_Frame_Del p.S312del 0.10 TCGA-RD-A8N5-01 1 113010145 113010145 A G WNT2B 5'UTR 0.09 TCGA-RD-A8N5-01 1 113189893 113189893 A G CAPZA1 Missense_Mutation p.N34S 0.21 deleterious(0.03) benign(0.166) TCGA-RD-A8N5-01 1 186097351 186097351 C T HMCN1 Nonsense_Mutation p.R4278* 0.10 TCGA-RD-A8N5-01 1 203040874 203040874 C T PPFIA4 Missense_Mutation p.R621W 0.14 deleterious(0) probably_damaging(0.992) TCGA-RD-A8N5-01 1 234742856 234742856 C A IRF2BP2 3'UTR 0.06 TCGA-RD-A8N5-01 1 246498701 246498701 C A SMYD3 Missense_Mutation p.V102F 0.14 deleterious(0) probably_damaging(0.997) TCGA-RD-A8N5-01 20 37356983 37356983 C T SLC32A1 Missense_Mutation p.R427C 0.11 deleterious(0.01) possibly_damaging(0.849) TCGA-RD-A8N5-01 20 51871290 51871290 G A TSHZ2 Silent p.S431S 0.07 TCGA-RD-A8N5-01 22 24567822 24567822 C T CABIN1 Missense_Mutation p.R1967C 0.13 deleterious_low_confidence(0) benign(0.001) TCGA-RD-A8N5-01 2 121747017 121747017 A G GLI2 Missense_Mutation p.Q1176R 0.14 deleterious(0.03) benign(0.272) TCGA-RD-A8N5-01 2 149227610 149227610 T C MBD5 Missense_Mutation p.S700P 0.21 tolerated(0.16) possibly_damaging(0.504) TCGA-RD-A8N5-01 2 171713632 171713632 C T GAD1 Silent p.G506G 0.06 TCGA-RD-A8N5-01 4 151505063 151505063 G A MAB21L2 Silent p.S294S 0.18 TCGA-RD-A8N5-01 4 165962393 165962393 G A TRIM60 Missense_Mutation p.R390Q 0.07 tolerated(0.25) benign(0.259) TCGA-RD-A8N5-01 5 140168138 140168138 C T PCDHA1 Missense_Mutation p.R755W 0.13 deleterious_low_confidence(0) benign(0.062) TCGA-RD-A8N5-01 5 140262318 140262318 T A PCDHA13 Missense_Mutation p.D155E 0.15 tolerated_low_confidence(1) benign(0.005) TCGA-RD-A8N5-01 5 140734787 140734787 G A PCDHGA4 Missense_Mutation p.R7H 0.11 tolerated_low_confidence(0.58) benign(0.002) TCGA-RD-A8N5-01 6 155145372 155145372 C T SCAF8 Missense_Mutation p.P644L 0.19 deleterious(0) probably_damaging(0.999) TCGA-RD-A8N5-01 6 75875409 75875409 G A COL12A1 Missense_Mutation p.R933C 0.05 probably_damaging(0.912) TCGA-RD-A8N5-01 7 72209673 72209673 G A TYW1B Intron 0.17 TCGA-RD-A8N5-01 7 91714810 91714810 G A AKAP9 Missense_Mutation p.G2945E 0.10 probably_damaging(1) TCGA-RD-A8N5-01 9 32630488 32630488 G A TAF1L Missense_Mutation p.T1697I 0.10 tolerated_low_confidence(0.07) benign(0.002) TCGA-RD-A8N5-01 9 4118120 4118120 G A GLIS3 Missense_Mutation p.P453L 0.25 tolerated(0.08) probably_damaging(0.999) TCGA-RD-A8N5-01 X 120181510 120181510 C T GLUD2 5'UTR 0.20 TCGA-RD-A8N6-01 10 105218333 105218333 G A CALHM1 Missense_Mutation p.A59V 0.21 tolerated(1) benign(0.003) TCGA-RD-A8N6-01 10 108489828 108489828 T G SORCS1 Missense_Mutation p.E335A 0.25 deleterious(0) probably_damaging(0.994) TCGA-RD-A8N6-01 10 45642902 45642902 C G RP11-445N18.7 RNA 0.17 TCGA-RD-A8N6-01 10 50315892 50315892 G A VSTM4 Silent p.F68F 0.42 TCGA-RD-A8N6-01 10 67680207 67680208 - T CTNNA3 Frame_Shift_Ins p.P857Tfs*4 0.18 TCGA-RD-A8N6-01 10 8006454 8006454 G A TAF3 Silent p.T327T 0.23 TCGA-RD-A8N6-01 10 81373717 81373717 C T SFTPA1 Missense_Mutation p.R214C 0.16 tolerated(0.12) benign(0.013) TCGA-RD-A8N6-01 10 85982204 85982204 C T LRIT2 Silent p.V375V 0.12 TCGA-RD-A8N6-01 10 85985176 85985176 C G LRIT2 Missense_Mutation p.S34T 0.48 tolerated(0.18) benign(0.045) TCGA-RD-A8N6-01 11 107501189 107501189 C T ELMOD1 Missense_Mutation p.R22C 0.25 tolerated(0.18) probably_damaging(0.998) TCGA-RD-A8N6-01 11 117100483 117100483 G A PCSK7 Silent p.A26A 0.33 TCGA-RD-A8N6-01 11 117153873 117153873 G A RNF214 Missense_Mutation p.V665I 0.16 deleterious(0.01) probably_damaging(0.996) TCGA-RD-A8N6-01 11 118047103 118047103 G A SCN2B Missense_Mutation p.T15M 0.20 tolerated(0.13) benign(0.009) TCGA-RD-A8N6-01 11 18751350 18751350 G A PTPN5 Nonsense_Mutation p.R449* 0.45 TCGA-RD-A8N6-01 11 45671862 45671862 G A CHST1 Silent p.A204A 0.19 TCGA-RD-A8N6-01 11 46724583 46724583 C T ZNF408 Missense_Mutation p.R148W 0.12 tolerated(0.05) benign(0.001) TCGA-RD-A8N6-01 11 48239183 48239183 G A OR4B1 Silent p.T274T 0.25 TCGA-RD-A8N6-01 11 5080542 5080543 - A OR52E2 Frame_Shift_Ins p.I106Yfs*18 0.27 TCGA-RD-A8N6-01 11 55432832 55432832 T C OR4C6 Silent p.L64L 0.45 TCGA-RD-A8N6-01 11 55873034 55873034 C T OR8H2 Silent p.N172N 0.21 TCGA-RD-A8N6-01 11 56143861 56143861 C A OR8U1 Silent p.T254T 0.32 TCGA-RD-A8N6-01 11 64519472 64519476 GAAGA - PYGM Frame_Shift_Del p.L563Rfs*11 0.18 TCGA-RD-A8N6-01 11 64520607 64520607 C T PYGM Missense_Mutation p.G486S 0.10 deleterious(0.01) probably_damaging(1) TCGA-RD-A8N6-01 11 64603002 64603002 C A CDC42BPG Missense_Mutation p.R617L 0.06 deleterious(0) benign(0.198) TCGA-RD-A8N6-01 11 74015451 74015451 G A P4HA3 Silent p.Y69Y 0.17 TCGA-RD-A8N6-01 11 764878 764878 C T TALDO1 3'UTR 0.40 TCGA-RD-A8N6-01 11 89774316 89774316 C G TRIM49C Silent p.P319P 0.10 TCGA-RD-A8N6-01 11 92564949 92564950 - C FAT3 Frame_Shift_Ins p.L3216Pfs*15 0.30 TCGA-RD-A8N6-01 12 105534783 105534783 G A KIAA1033 Missense_Mutation p.R556Q 0.60 tolerated(0.06) possibly_damaging(0.688) TCGA-RD-A8N6-01 12 121840554 121840554 T G RNF34 5'UTR 0.06 TCGA-RD-A8N6-01 12 124175084 124175084 C G TCTN2 Missense_Mutation p.S299C 0.48 deleterious(0) probably_damaging(0.992) TCGA-RD-A8N6-01 12 129694197 129694197 G A TMEM132D Silent p.I437I 0.23 TCGA-RD-A8N6-01 12 132537885 132537885 C T EP400 Intron 0.40 TCGA-RD-A8N6-01 12 13367542 13367542 G A EMP1 Missense_Mutation p.G131S 0.32 deleterious(0) probably_damaging(1) TCGA-RD-A8N6-01 12 2719829 2719829 C T CACNA1C Silent p.V1247V 0.12 TCGA-RD-A8N6-01 12 40013407 40013408 AT - ABCD2 Frame_Shift_Del p.M4Afs*6 0.30 TCGA-RD-A8N6-01 12 51492676 51492678 TTC - TFCP2 In_Frame_Del p.E434del 0.22 TCGA-RD-A8N6-01 12 52842672 52842672 C T KRT6B Missense_Mutation p.R386H 0.07 deleterious(0) possibly_damaging(0.479) TCGA-RD-A8N6-01 12 52842677 52842677 G A KRT6B Silent p.I384I 0.10 TCGA-RD-A8N6-01 12 53609489 53609489 C T RARG Missense_Mutation p.V92M 0.14 deleterious(0) probably_damaging(0.984) TCGA-RD-A8N6-01 12 7086590 7086590 C G LPCAT3 Missense_Mutation p.W429S 0.17 deleterious(0.03) probably_damaging(0.998) TCGA-RD-A8N6-01 12 7632521 7632521 C A CD163 Nonsense_Mutation p.G1139* 0.11 TCGA-RD-A8N6-01 12 94692426 94692426 C A PLXNC1 Missense_Mutation p.L1365I 0.20 deleterious(0.01) possibly_damaging(0.596) TCGA-RD-A8N6-01 13 25433265 25433265 G A RNF17 Missense_Mutation p.R1246H 0.39 deleterious(0) probably_damaging(0.991) TCGA-RD-A8N6-01 13 33627969 33627969 C A KL Silent p.S295S 0.05 TCGA-RD-A8N6-01 13 52532476 52532476 G A ATP7B Silent p.L776L 0.43 TCGA-RD-A8N6-01 13 58207693 58207693 C T PCDH17 Missense_Mutation p.T338M 0.35 tolerated(0.19) probably_damaging(0.994) TCGA-RD-A8N6-01 13 88327784 88327784 C T SLITRK5 Silent p.I47I 0.50 TCGA-RD-A8N6-01 13 99171621 99171621 A G STK24 Missense_Mutation p.V62A 0.50 deleterious(0) probably_damaging(1) TCGA-RD-A8N6-01 14 52794119 52794119 A T PTGER2 Missense_Mutation p.T342S 0.06 tolerated(0.51) benign(0.001) TCGA-RD-A8N6-01 14 59111980 59111980 C G DACT1 Silent p.L213L 0.20 TCGA-RD-A8N6-01 14 67578617 67578617 C T GPHN Missense_Mutation p.R485W 0.21 deleterious(0) probably_damaging(0.999) TCGA-RD-A8N6-01 14 70478229 70478229 C T SMOC1 Silent p.D295D 0.11 TCGA-RD-A8N6-01 14 74538953 74538953 G A ALDH6A1 Missense_Mutation p.R101C 0.24 deleterious(0) probably_damaging(1) TCGA-RD-A8N6-01 15 28443585 28443585 A G HERC2 Silent p.S2650S 0.13 TCGA-RD-A8N6-01 15 41228736 41228736 C T DLL4 Silent p.C517C 0.67 TCGA-RD-A8N6-01 15 48729975 48729975 C T FBN1 Silent p.T2101T 0.37 TCGA-RD-A8N6-01 15 62161802 62161802 C A VPS13C Missense_Mutation p.A3549S 0.05 tolerated(0.07) possibly_damaging(0.773) TCGA-RD-A8N6-01 15 68649513 68649513 G A ITGA11 Missense_Mutation p.T242M 0.26 deleterious(0) probably_damaging(1) TCGA-RD-A8N6-01 15 81584950 81584950 C T IL16 Nonsense_Mutation p.R492* 0.38 TCGA-RD-A8N6-01 16 1894929 1894929 G A MEIOB Nonsense_Mutation p.R272* 0.17 TCGA-RD-A8N6-01 16 30976135 30976135 C G SETD1A Missense_Mutation p.Q358E 0.28 benign(0.009) TCGA-RD-A8N6-01 16 3100528 3100528 C G MMP25 Silent p.T214T 0.25 TCGA-RD-A8N6-01 16 3367768 3367768 C T ZNF75A Missense_Mutation p.R264W 0.45 deleterious(0.03) probably_damaging(0.953) TCGA-RD-A8N6-01 16 55522477 55522477 C T MMP2 Silent p.N285N 0.21 TCGA-RD-A8N6-01 16 55844441 55844441 G A CES1 Missense_Mutation p.R436W 0.24 deleterious(0.02) possibly_damaging(0.583) TCGA-RD-A8N6-01 16 57695840 57695840 C T GPR56 Silent p.V638V 0.44 TCGA-RD-A8N6-01 16 615155 615155 G A C16orf11 Missense_Mutation p.D522N 0.32 deleterious(0) probably_damaging(1) TCGA-RD-A8N6-01 16 67329221 67329221 G A KCTD19 Nonsense_Mutation p.R446* 0.57 TCGA-RD-A8N6-01 16 72108257 72108257 T A HPR Missense_Mutation p.Y56N 0.49 deleterious(0.01) benign(0.005) TCGA-RD-A8N6-01 16 86601239 86601239 C T FOXC2 Nonsense_Mutation p.Q100* 0.36 TCGA-RD-A8N6-01 16 89962425 89962425 C T TCF25 Missense_Mutation p.A319V 0.15 deleterious(0.05) benign(0.048) TCGA-RD-A8N6-01 17 27027988 27027988 G A SUPT6H Silent p.V1612V 0.04 TCGA-RD-A8N6-01 17 27869874 27869874 C T TAOK1 Missense_Mutation p.P947L 0.19 tolerated_low_confidence(0.14) benign(0.071) TCGA-RD-A8N6-01 17 39671706 39671706 C T KRT15 Intron 0.13 TCGA-RD-A8N6-01 17 46058871 46058871 C A CDK5RAP3 3'UTR 0.30 TCGA-RD-A8N6-01 17 4805288 4805288 C T CHRNE Missense_Mutation p.V147I 0.14 deleterious(0) benign(0.007) TCGA-RD-A8N6-01 17 56344819 56344819 C T LPO Silent p.Y601Y 0.25 TCGA-RD-A8N6-01 17 63532501 63532501 G A AXIN2 Missense_Mutation p.T693M 0.41 deleterious(0.02) probably_damaging(1) TCGA-RD-A8N6-01 17 6606380 6606380 T C SLC13A5 Missense_Mutation p.T209A 0.37 tolerated(0.4) benign(0.026) TCGA-RD-A8N6-01 17 7577498 7577498 C T TP53 Splice_Site p.X261_splice 0.90 TCGA-RD-A8N6-01 17 76120642 76120642 G A TMC6 Missense_Mutation p.A285V 0.28 tolerated(0.3) benign(0.001) TCGA-RD-A8N6-01 17 79652704 79652704 G T HGS Missense_Mutation p.R36L 0.33 deleterious(0.01) probably_damaging(0.977) TCGA-RD-A8N6-01 18 18571244 18571244 G C ROCK1 Nonsense_Mutation p.S679* 0.08 TCGA-RD-A8N6-01 18 57103355 57103355 C T CCBE1 Missense_Mutation p.D336N 0.41 deleterious(0) probably_damaging(0.998) TCGA-RD-A8N6-01 18 74962958 74962958 G A GALR1 Missense_Mutation p.A152T 0.53 deleterious(0.03) probably_damaging(0.917) TCGA-RD-A8N6-01 19 12858230 12858230 G A ASNA1 Missense_Mutation p.V247I 0.22 deleterious(0.01) possibly_damaging(0.702) TCGA-RD-A8N6-01 19 14938698 14938698 G A OR7A5 Missense_Mutation p.A119V 0.25 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-RD-A8N6-01 19 21132109 21132109 T C ZNF85 Silent p.C263C 0.31 TCGA-RD-A8N6-01 19 22155828 22155828 A T ZNF208 Missense_Mutation p.C670S 0.11 deleterious(0) probably_damaging(0.986) TCGA-RD-A8N6-01 19 36166890 36166890 G A UPK1A Missense_Mutation p.R206H 0.25 deleterious(0.04) possibly_damaging(0.867) TCGA-RD-A8N6-01 19 44778099 44778102 AAGT - ZNF233 Frame_Shift_Del p.S431Tfs*274 0.32 TCGA-RD-A8N6-01 19 51294975 51294975 G A ACPT Silent p.G122G 0.65 TCGA-RD-A8N6-01 19 52869270 52869270 T C ZNF610 Silent p.F213F 0.18 TCGA-RD-A8N6-01 19 57132721 57132721 G - ZNF71 Frame_Shift_Del p.G24Dfs*45 0.24 TCGA-RD-A8N6-01 19 57646962 57646962 T C ZIM3 Missense_Mutation p.E248G 0.19 deleterious(0) possibly_damaging(0.89) TCGA-RD-A8N6-01 19 58571459 58571459 G A ZNF135 Intron 0.26 TCGA-RD-A8N6-01 19 6772883 6772883 G T VAV1 Missense_Mutation p.R22L 0.15 deleterious(0) probably_damaging(0.999) TCGA-RD-A8N6-01 19 9721707 9721707 T G ZNF561 Silent p.A210A 0.22 TCGA-RD-A8N6-01 1 112026295 112026295 A T ADORA3 3'UTR 0.20 TCGA-RD-A8N6-01 1 12374367 12374367 G T VPS13D Missense_Mutation p.Q2377H 0.23 probably_damaging(0.986) TCGA-RD-A8N6-01 1 1417625 1417625 C T ATAD3B Missense_Mutation p.R208C 0.12 tolerated(0.08) probably_damaging(0.935) TCGA-RD-A8N6-01 1 144917553 144917553 A G PDE4DIP Silent p.D517D 0.09 TCGA-RD-A8N6-01 1 152277526 152277526 G C FLG Missense_Mutation p.A3279G 0.17 unknown(0) TCGA-RD-A8N6-01 1 158436142 158436142 C T OR10K1 Missense_Mutation p.T264I 0.19 deleterious(0) benign(0.219) TCGA-RD-A8N6-01 1 15956924 15956924 A G DDI2 Missense_Mutation p.I125V 0.23 tolerated(0.29) benign(0.001) TCGA-RD-A8N6-01 1 164769126 164776777 1:164769126-164776777 - PBX1 large deletion p.X234_splice 0.13 TCGA-RD-A8N6-01 1 169822830 169822830 C G C1orf112 3'UTR 0.13 TCGA-RD-A8N6-01 1 179078016 179078016 T - ABL2 Frame_Shift_Del p.R796Gfs*4 0.17 TCGA-RD-A8N6-01 1 202710621 202710621 C T KDM5B Missense_Mutation p.R940H 0.26 deleterious(0.01) probably_damaging(0.982) TCGA-RD-A8N6-01 1 203696623 203696623 A T ATP2B4 Missense_Mutation p.E1078V 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-RD-A8N6-01 1 220275603 220275604 AC - IARS2 Frame_Shift_Del p.Y228Sfs*4 0.15 TCGA-RD-A8N6-01 1 237167681 237167681 G A MT1HL1 5'UTR 0.66 TCGA-RD-A8N6-01 1 38171191 38171193 TGC - CDCA8 In_Frame_Del p.A222del 0.19 TCGA-RD-A8N6-01 1 39927558 39927558 T C MACF1 Missense_Mutation p.F5117S 0.50 probably_damaging(0.931) TCGA-RD-A8N6-01 1 42865128 42865128 C T RIMKLA Missense_Mutation p.R73W 0.21 deleterious(0) probably_damaging(0.945) TCGA-RD-A8N6-01 1 46056902 46056902 G C NASP Missense_Mutation p.D23H 0.06 tolerated_low_confidence(0.08) probably_damaging(0.999) TCGA-RD-A8N6-01 1 57602304 57602304 G T DAB1 Missense_Mutation p.A73D 0.11 deleterious(0) benign(0.405) TCGA-RD-A8N6-01 1 63084381 63084381 A - DOCK7 Frame_Shift_Del p.Y560Tfs*24 0.19 TCGA-RD-A8N6-01 1 8390650 8390650 C T SLC45A1 Missense_Mutation p.S366L 0.17 deleterious(0.04) probably_damaging(0.999) TCGA-RD-A8N6-01 1 85506725 85506725 C G MCOLN3 Missense_Mutation p.V122L 0.12 tolerated(0.5) benign(0.156) TCGA-RD-A8N6-01 1 91816302 91816302 A G HFM1 Silent p.S733S 0.48 TCGA-RD-A8N6-01 20 32224499 32224499 T A CBFA2T2 Missense_Mutation p.F437I 0.09 tolerated(1) benign(0) TCGA-RD-A8N6-01 20 32369095 32369095 A G ZNF341 Splice_Site p.X534_splice 0.28 TCGA-RD-A8N6-01 20 35862431 35862431 G C RPN2 Silent p.R562R 0.10 TCGA-RD-A8N6-01 20 37620129 37620129 G T DHX35 Missense_Mutation p.M161I 0.08 tolerated(0.3) benign(0.034) TCGA-RD-A8N6-01 20 58475294 58475294 C T SYCP2 Missense_Mutation p.V435I 0.04 tolerated(0.64) benign(0.021) TCGA-RD-A8N6-01 20 6057066 6057066 C A FERMT1 3'UTR 0.24 TCGA-RD-A8N6-01 21 38573747 38573747 A T TTC3 Nonsense_Mutation p.K1984* 0.27 TCGA-RD-A8N6-01 21 46320324 46320324 C T ITGB2 Missense_Mutation p.A270T 0.10 deleterious(0) probably_damaging(0.975) TCGA-RD-A8N6-01 22 24621553 24621553 C T GGT5 Missense_Mutation p.E433K 0.41 tolerated(0.78) possibly_damaging(0.568) TCGA-RD-A8N6-01 22 25601265 25601265 G A CRYBB3 Missense_Mutation p.V136M 0.41 deleterious(0.04) probably_damaging(0.988) TCGA-RD-A8N6-01 22 30886179 30886179 T C SEC14L4 Missense_Mutation p.Y379C 0.23 deleterious(0) probably_damaging(0.999) TCGA-RD-A8N6-01 2 105858503 105858503 C T GPR45 Missense_Mutation p.P63L 0.22 deleterious(0) possibly_damaging(0.716) TCGA-RD-A8N6-01 2 131704217 131704217 C T ARHGEF4 Intron 0.42 TCGA-RD-A8N6-01 2 137872775 137872775 G A THSD7B Silent p.T427T 0.81 TCGA-RD-A8N6-01 2 153484859 153484859 C T FMNL2 Missense_Mutation p.R738W 0.42 possibly_damaging(0.835) TCGA-RD-A8N6-01 2 165404265 165404265 G A GRB14 Missense_Mutation p.T129M 0.70 deleterious(0.03) possibly_damaging(0.818) TCGA-RD-A8N6-01 2 176959463 176959463 G C HOXD13 3'UTR 0.51 TCGA-RD-A8N6-01 2 179465771 179465771 T C TTN Silent p.A18620A 0.28 TCGA-RD-A8N6-01 2 179478615 179478615 G A TTN Silent p.D16465D 0.45 TCGA-RD-A8N6-01 2 179496952 179496952 C T TTN Missense_Mutation p.D14557N 0.20 TCGA-RD-A8N6-01 2 179647001 179647001 G A TTN Silent p.G1106G 0.24 TCGA-RD-A8N6-01 2 234676577 234676577 T C UGT1A10 Missense_Mutation p.L357P 0.09 deleterious(0) probably_damaging(1) TCGA-RD-A8N6-01 2 235951043 235951043 A T SH3BP4 Missense_Mutation p.N544Y 0.19 tolerated(0.07) probably_damaging(0.968) TCGA-RD-A8N6-01 2 24930741 24930741 T G NCOA1 Missense_Mutation p.L801R 0.43 tolerated(0.06) possibly_damaging(0.606) TCGA-RD-A8N6-01 2 3627819 3627819 A C RPS7 Missense_Mutation p.D159A 0.07 deleterious(0.01) possibly_damaging(0.564) TCGA-RD-A8N6-01 2 37362652 37362652 C T EIF2AK2 Missense_Mutation p.E254K 0.22 tolerated(0.56) benign(0.015) TCGA-RD-A8N6-01 2 48915121 48915121 T G LHCGR Missense_Mutation p.K605N 0.44 deleterious(0) probably_damaging(0.999) TCGA-RD-A8N6-01 2 66796231 66796231 C G MEIS1 Missense_Mutation p.H388Q 0.10 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-RD-A8N6-01 2 69350194 69350194 C A ANTXR1 Missense_Mutation p.A283E 0.14 deleterious(0) probably_damaging(0.999) TCGA-RD-A8N6-01 2 80529510 80529510 G A LRRTM1 Nonsense_Mutation p.Q479* 0.10 TCGA-RD-A8N6-01 2 88874875 88874875 A G EIF2AK3 Missense_Mutation p.I709T 0.06 tolerated(0.19) benign(0.011) TCGA-RD-A8N6-01 3 111632337 111632337 G A PHLDB2 Missense_Mutation p.D503N 0.08 deleterious(0.02) benign(0.244) TCGA-RD-A8N6-01 3 130162345 130162345 G A COL6A5 Silent p.P2171P 0.49 TCGA-RD-A8N6-01 3 147108992 147108992 G A ZIC4 Missense_Mutation p.R294C 0.12 deleterious(0) probably_damaging(0.996) TCGA-RD-A8N6-01 3 165491119 165491119 T C BCHE 3'UTR 0.21 TCGA-RD-A8N6-01 3 183774681 183774681 G A HTR3C Silent p.T136T 0.31 TCGA-RD-A8N6-01 3 28562577 28562577 A G ZCWPW2 Silent p.G293G 0.26 TCGA-RD-A8N6-01 3 48669462 48669462 T A SLC26A6 Missense_Mutation p.I201F 0.44 deleterious(0) benign(0.016) TCGA-RD-A8N6-01 3 97731238 97731238 C G GABRR3 RNA 0.16 TCGA-RD-A8N6-01 4 108866479 108866479 G C CYP2U1 Missense_Mutation p.G282R 0.13 deleterious(0.02) probably_damaging(1) TCGA-RD-A8N6-01 4 156136112 156136112 C T NPY2R Missense_Mutation p.R341C 0.33 deleterious(0.01) benign(0.008) TCGA-RD-A8N6-01 4 57777112 57777112 C G REST Missense_Mutation p.P103R 0.36 tolerated(0.08) possibly_damaging(0.726) TCGA-RD-A8N6-01 4 82061719 82061719 G T PRKG2 Silent p.I504I 0.25 TCGA-RD-A8N6-01 5 108679918 108679918 T C PJA2 Silent p.K658K 0.71 TCGA-RD-A8N6-01 5 150275502 150275502 A G ZNF300 Silent p.G449G 0.47 TCGA-RD-A8N6-01 5 159834541 159834541 G C SLU7 Missense_Mutation p.S356C 0.27 deleterious(0) probably_damaging(0.962) TCGA-RD-A8N6-01 5 178413301 178413301 C T GRM6 Missense_Mutation p.A652T 0.52 tolerated(0.06) benign(0.363) TCGA-RD-A8N6-01 5 34005964 34005964 C G AMACR Missense_Mutation p.Q96H 0.14 tolerated(0.09) possibly_damaging(0.605) TCGA-RD-A8N6-01 5 37064956 37064956 C G NIPBL Missense_Mutation p.R2793G 0.11 deleterious_low_confidence(0) possibly_damaging(0.871) TCGA-RD-A8N6-01 6 10586168 10586168 G A GCNT2 Intron 0.31 TCGA-RD-A8N6-01 6 111588062 111588062 G T KIAA1919 Missense_Mutation p.G433W 0.17 deleterious(0.01) probably_damaging(0.955) TCGA-RD-A8N6-01 6 116381464 116381464 A G FRK Missense_Mutation p.I4T 0.47 tolerated_low_confidence(0.09) benign(0.001) TCGA-RD-A8N6-01 6 149903626 149903626 G A GINM1 Nonsense_Mutation p.W256* 0.18 TCGA-RD-A8N6-01 6 158053874 158053874 C A ZDHHC14 Missense_Mutation p.Q238K 0.19 tolerated(0.66) benign(0.004) TCGA-RD-A8N6-01 6 165806201 165806201 C T PDE10A Silent p.A530A 0.33 TCGA-RD-A8N6-01 6 38810490 38810490 C G DNAH8 Silent p.L1335L 0.07 TCGA-RD-A8N6-01 6 43173003 43173003 G A CUL9 Missense_Mutation p.M1545I 0.05 tolerated(0.1) benign(0.001) TCGA-RD-A8N6-01 6 52897372 52897372 G A ICK Silent p.F79F 0.24 TCGA-RD-A8N6-01 6 75801105 75801105 C T COL12A1 Missense_Mutation p.G2896R 0.31 probably_damaging(1) TCGA-RD-A8N6-01 7 103338415 103338415 C T RELN Nonsense_Mutation p.W343* 0.14 TCGA-RD-A8N6-01 7 11521609 11521609 C G THSD7A Missense_Mutation p.G608A 0.18 deleterious(0) possibly_damaging(0.685) TCGA-RD-A8N6-01 7 131872331 131872331 C - PLXNA4 Frame_Shift_Del p.M966Cfs*7 0.10 TCGA-RD-A8N6-01 7 44836322 44836322 C T PPIA 5'UTR 0.12 TCGA-RD-A8N6-01 7 45662336 45662336 A G ADCY1 Silent p.L338L 0.27 TCGA-RD-A8N6-01 7 55479697 55479697 C G LANCL2 Nonsense_Mutation p.S308* 0.07 TCGA-RD-A8N6-01 7 64439610 64439610 T C ZNF117 Silent p.E113E 0.21 TCGA-RD-A8N6-01 7 87757932 87757932 C T ADAM22 Missense_Mutation p.R232C 0.35 deleterious(0) probably_damaging(0.953) TCGA-RD-A8N6-01 7 92763369 92763369 C A SAMD9L Missense_Mutation p.G639V 0.02 deleterious(0) possibly_damaging(0.843) TCGA-RD-A8N6-01 8 104336873 104336873 A T FZD6 Missense_Mutation p.Q180L 0.37 deleterious(0.01) benign(0.091) TCGA-RD-A8N6-01 8 126448603 126448603 T C TRIB1 Missense_Mutation p.W337R 0.18 deleterious(0) probably_damaging(1) TCGA-RD-A8N6-01 8 136619254 136619254 T C KHDRBS3 Silent p.D288D 0.13 TCGA-RD-A8N6-01 8 144733543 144733543 A G ZNF623 Missense_Mutation p.N501D 0.10 tolerated(0.71) benign(0.001) TCGA-RD-A8N6-01 8 145737594 145737594 C G RECQL4 Missense_Mutation p.G1057R 0.17 tolerated(0.39) benign(0.03) TCGA-RD-A8N6-01 9 110068885 110068885 C G RAD23B Missense_Mutation p.P152A 0.23 deleterious(0.05) possibly_damaging(0.539) TCGA-RD-A8N6-01 9 117808788 117808788 C T TNC Missense_Mutation p.D1676N 0.05 tolerated(0.41) probably_damaging(0.988) TCGA-RD-A8N6-01 9 131893899 131893899 G A PPP2R4 Silent p.T147T 0.23 TCGA-RD-A8N6-01 9 139391807 139391807 C T NOTCH1 Silent p.P2128P 0.21 TCGA-RD-A8N6-01 9 36677200 36677200 A G MELK Missense_Mutation p.T608A 0.17 tolerated(0.13) possibly_damaging(0.67) TCGA-RD-A8N6-01 X 109695148 109695148 G A RGAG1 Missense_Mutation p.G435R 0.30 tolerated(0.07) possibly_damaging(0.737) TCGA-RD-A8N6-01 X 125686209 125686209 C T DCAF12L1 Missense_Mutation p.G128D 0.36 tolerated(0.15) benign(0.049) TCGA-RD-A8N6-01 X 132351471 132351471 C T TFDP3 Missense_Mutation p.D273N 0.08 tolerated(1) benign(0) TCGA-RD-A8N6-01 X 140996473 140996473 G A MAGEC1 Missense_Mutation p.V1095I 0.23 tolerated(0.05) unknown(0) TCGA-RD-A8N6-01 X 152915606 152915607 - G DUSP9 Frame_Shift_Ins p.Q336Afs*6 0.20 TCGA-RD-A8N6-01 X 78217008 78217008 A T P2RY10 Nonsense_Mutation p.K331* 0.43 TCGA-RD-A8N6-01 X 89177509 89177509 T C TGIF2LX Missense_Mutation p.V142A 0.33 tolerated(0.11) probably_damaging(0.935) TCGA-RD-A8N6-01 X 9656115 9656115 T C TBL1X Missense_Mutation p.M139T 0.43 tolerated(0.57) benign(0.003) TCGA-RD-A8N9-01 10 12139778 12139778 A G DHTKD1 Missense_Mutation p.Y485C 0.12 tolerated(0.15) possibly_damaging(0.886) TCGA-RD-A8N9-01 10 17032414 17032414 C T CUBN Silent p.T1423T 0.21 TCGA-RD-A8N9-01 10 26463098 26463098 A G MYO3A Missense_Mutation p.E1302G 0.17 tolerated_low_confidence(0.06) benign(0.009) TCGA-RD-A8N9-01 10 27692276 27692276 T C PTCHD3 Missense_Mutation p.I408V 0.30 tolerated(1) benign(0.006) TCGA-RD-A8N9-01 10 31809058 31809058 G A ZEB1 Silent p.E266E 0.29 TCGA-RD-A8N9-01 10 69716694 69716694 C T HERC4 Missense_Mutation p.V664I 0.26 tolerated(0.71) benign(0.019) TCGA-RD-A8N9-01 10 84498371 84498371 T G NRG3 Missense_Mutation p.F331C 0.20 deleterious(0) probably_damaging(0.983) TCGA-RD-A8N9-01 11 123909469 123909469 C A OR10G7 Silent p.L80L 0.11 TCGA-RD-A8N9-01 11 24936055 24936055 C A LUZP2 Missense_Mutation p.R165S 0.31 deleterious(0) probably_damaging(0.992) TCGA-RD-A8N9-01 11 31312195 31312195 T C DCDC1 Missense_Mutation p.K320R 0.17 deleterious(0.02) probably_damaging(0.972) TCGA-RD-A8N9-01 11 35219792 35219792 C A CD44 Silent p.T307T 0.12 TCGA-RD-A8N9-01 11 46700614 46700614 G A ARHGAP1 Silent p.F431F 0.23 TCGA-RD-A8N9-01 11 55432852 55432852 G T OR4C6 Missense_Mutation p.M70I 0.10 tolerated_low_confidence(0.34) benign(0) TCGA-RD-A8N9-01 11 55433199 55433199 C T OR4C6 Missense_Mutation p.A186V 0.45 tolerated_low_confidence(0.19) probably_damaging(0.99) TCGA-RD-A8N9-01 11 55798469 55798469 C T OR5AS1 Missense_Mutation p.T192I 0.12 tolerated(0.09) benign(0.134) TCGA-RD-A8N9-01 11 55904631 55904631 A C OR8J3 Silent p.S188S 0.12 TCGA-RD-A8N9-01 11 56185700 56185700 T G OR5R1 Missense_Mutation p.E3D 0.17 tolerated(0.13) benign(0.001) TCGA-RD-A8N9-01 11 59244999 59245000 TT - OR4D10 Frame_Shift_Del p.L33Gfs*19 0.15 TCGA-RD-A8N9-01 11 65631344 65631344 T G MUS81 Missense_Mutation p.I344S 0.46 deleterious(0) probably_damaging(0.999) TCGA-RD-A8N9-01 11 74559383 74559383 G A XRRA1 Missense_Mutation p.P494L 0.48 deleterious(0.04) benign(0.005) TCGA-RD-A8N9-01 11 78516386 78516386 G A TENM4 Silent p.T710T 0.39 TCGA-RD-A8N9-01 12 133351867 133351867 C T GOLGA3 Missense_Mutation p.A1335T 0.17 deleterious(0.01) benign(0.381) TCGA-RD-A8N9-01 12 25260805 25260805 T A LRMP Silent p.A437A 0.18 TCGA-RD-A8N9-01 12 54107573 54107573 C T CALCOCO1 Missense_Mutation p.R568Q 0.24 tolerated(0.2) benign(0.008) TCGA-RD-A8N9-01 12 64818479 64818479 G A XPOT Missense_Mutation p.R428H 0.10 tolerated(0.76) benign(0) TCGA-RD-A8N9-01 13 25670781 25670781 G A PABPC3 Missense_Mutation p.E149K 0.20 deleterious(0) probably_damaging(0.975) TCGA-RD-A8N9-01 13 36245057 36245057 G C NBEA Missense_Mutation p.A2924P 0.40 deleterious(0.01) possibly_damaging(0.61) TCGA-RD-A8N9-01 13 45515406 45515406 G A NUFIP1 Missense_Mutation p.R475W 0.11 deleterious(0) probably_damaging(1) TCGA-RD-A8N9-01 13 48835321 48835321 T C ITM2B Silent p.F254F 0.13 TCGA-RD-A8N9-01 13 50123687 50123687 C T RCBTB1 Missense_Mutation p.V318M 0.09 deleterious(0.05) possibly_damaging(0.654) TCGA-RD-A8N9-01 13 70549758 70549758 G T KLHL1 Missense_Mutation p.A225E 0.12 deleterious(0) probably_damaging(0.986) TCGA-RD-A8N9-01 14 104575605 104575605 C T ASPG Silent p.A491A 0.20 TCGA-RD-A8N9-01 14 20444585 20444585 C T OR4K15 Missense_Mutation p.T303M 0.27 deleterious(0.01) probably_damaging(0.996) TCGA-RD-A8N9-01 14 68220434 68220434 C G ZFYVE26 Missense_Mutation p.R2393P 0.21 deleterious(0) probably_damaging(0.998) TCGA-RD-A8N9-01 14 80668670 80668670 C A DIO2 3'Flank 0.23 TCGA-RD-A8N9-01 15 25451431 25451431 A G SNORD115-20 RNA 0.19 TCGA-RD-A8N9-01 15 25972400 25972400 C T ATP10A Missense_Mutation p.G252R 0.18 tolerated(0.07) benign(0.43) TCGA-RD-A8N9-01 15 42129322 42129322 G A JMJD7 Missense_Mutation p.D307N 0.20 deleterious(0) possibly_damaging(0.767) TCGA-RD-A8N9-01 15 42743573 42743573 G A ZNF106 Silent p.D276D 0.24 TCGA-RD-A8N9-01 15 48435038 48435038 A - MYEF2 3'UTR 0.10 TCGA-RD-A8N9-01 15 49663506 49663506 G A FAM227B Missense_Mutation p.A368V 0.31 tolerated(0.53) benign(0.052) TCGA-RD-A8N9-01 15 54306714 54306714 G T UNC13C Missense_Mutation p.Q538H 0.12 deleterious_low_confidence(0) benign(0.017) TCGA-RD-A8N9-01 15 75119119 75119119 T A CPLX3 Missense_Mutation p.D25E 0.13 tolerated(1) benign(0.003) TCGA-RD-A8N9-01 15 75978041 75978041 G T CSPG4 Missense_Mutation p.A1264E 0.17 deleterious(0) possibly_damaging(0.623) TCGA-RD-A8N9-01 15 85326612 85326612 C T ZNF592 Nonsense_Mutation p.R236* 0.17 TCGA-RD-A8N9-01 15 97327470 97327470 G A SPATA8 Silent p.P59P 0.45 TCGA-RD-A8N9-01 16 129443 129444 AA T MPG Frame_Shift_Del p.Q20Lfs*88 0.16 TCGA-RD-A8N9-01 16 14029219 14029219 G A ERCC4 Missense_Mutation p.R477Q 0.11 tolerated(0.44) benign(0.001) TCGA-RD-A8N9-01 16 19127266 19127266 C A ITPRIPL2 Silent p.R495R 0.21 TCGA-RD-A8N9-01 16 24820702 24820702 T A TNRC6A Missense_Mutation p.D1524E 0.13 tolerated(0.12) benign(0.119) TCGA-RD-A8N9-01 16 2546294 2546294 G A RP11-20I23.1 Missense_Mutation p.A49T 0.19 tolerated(0.9) benign(0.002) TCGA-RD-A8N9-01 16 55903557 55903557 C T CES5A Missense_Mutation p.V202I 0.13 tolerated(1) benign(0.005) TCGA-RD-A8N9-01 16 84690532 84690532 G A KLHL36 Missense_Mutation p.R40H 0.24 deleterious(0.04) possibly_damaging(0.784) TCGA-RD-A8N9-01 17 26695569 26695569 C T VTN Missense_Mutation p.E318K 0.14 tolerated(0.29) benign(0.005) TCGA-RD-A8N9-01 17 26950941 26950941 G A KIAA0100 Missense_Mutation p.S1599L 0.32 deleterious(0) probably_damaging(0.963) TCGA-RD-A8N9-01 17 33428244 33428244 C T RAD51L3-RFFL Silent p.A134A 0.16 TCGA-RD-A8N9-01 17 38910187 38910187 C T KRT25 Silent p.L198L 0.16 TCGA-RD-A8N9-01 17 44408925 44408925 G A LRRC37A Missense_Mutation p.A1428T 0.10 deleterious(0.05) benign(0.155) TCGA-RD-A8N9-01 17 61615544 61615544 G T KCNH6 Missense_Mutation p.Q540H 0.24 tolerated(0.09) benign(0.144) TCGA-RD-A8N9-01 17 61987115 61987115 G A CSHL1 Missense_Mutation p.R209C 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-RD-A8N9-01 17 7576919 7576919 G - TP53 Frame_Shift_Del p.N310Tfs*35 0.23 TCGA-RD-A8N9-01 18 6213160 6213160 G T L3MBTL4 Missense_Mutation p.D323E 0.12 tolerated(0.08) benign(0.002) TCGA-RD-A8N9-01 18 8825456 8825456 G A SOGA2 Silent p.T1316T 0.09 TCGA-RD-A8N9-01 19 12876969 12876969 G A HOOK2 Missense_Mutation p.R487C 0.31 deleterious(0.03) benign(0.023) TCGA-RD-A8N9-01 19 14675788 14675788 C T TECR Missense_Mutation p.A197V 0.44 tolerated(0.06) benign(0.066) TCGA-RD-A8N9-01 19 15989601 15989601 G A CYP4F2 Missense_Mutation p.R515W 0.31 tolerated(0.06) benign(0.173) TCGA-RD-A8N9-01 19 18576361 18576361 G A ELL Silent p.C110C 0.16 TCGA-RD-A8N9-01 19 31040060 31040060 C T ZNF536 Silent p.N1178N 0.18 TCGA-RD-A8N9-01 19 38985110 38985110 G T RYR1 Silent p.L2131L 0.57 TCGA-RD-A8N9-01 19 40392594 40392594 G A FCGBP Missense_Mutation p.P2637L 0.10 possibly_damaging(0.726) TCGA-RD-A8N9-01 19 43258532 43258532 G T PSG8 Nonsense_Mutation p.S399* 0.14 TCGA-RD-A8N9-01 19 43522921 43522921 C T PSG11 Splice_Site p.X237_splice 0.17 TCGA-RD-A8N9-01 19 51958727 51958727 G A SIGLEC8 Silent p.N332N 0.46 TCGA-RD-A8N9-01 19 52327283 52327283 C A FPR3 Silent p.G94G 0.08 TCGA-RD-A8N9-01 19 53344668 53344668 A G ZNF468 Silent p.H293H 0.14 TCGA-RD-A8N9-01 19 55329947 55329947 G T KIR3DL1 Missense_Mutation p.S83I 0.16 deleterious(0) possibly_damaging(0.844) TCGA-RD-A8N9-01 19 58579861 58579861 G T ZNF135 3'UTR 0.56 TCGA-RD-A8N9-01 19 58988619 58988619 G A ZNF446 Missense_Mutation p.V12I 0.16 tolerated(0.45) benign(0.007) TCGA-RD-A8N9-01 1 158435661 158435661 T G OR10K1 Missense_Mutation p.F104V 0.14 deleterious(0) probably_damaging(0.998) TCGA-RD-A8N9-01 1 158637785 158637785 T G SPTA1 Missense_Mutation p.K634T 0.17 deleterious(0.03) benign(0.201) TCGA-RD-A8N9-01 1 161092804 161092804 A G DEDD Intron 0.19 TCGA-RD-A8N9-01 1 171310750 171310750 A T FMO4 Missense_Mutation p.R483S 0.12 deleterious(0) probably_damaging(0.99) TCGA-RD-A8N9-01 1 211923356 211923356 A G LPGAT1 Missense_Mutation p.V333A 0.10 tolerated(0.46) benign(0) TCGA-RD-A8N9-01 1 29189665 29189665 G A OPRD1 Missense_Mutation p.R330H 0.24 tolerated(0.06) benign(0.236) TCGA-RD-A8N9-01 1 43119642 43119642 G A CCDC30 Silent p.V765V 0.19 TCGA-RD-A8N9-01 1 45475899 45475899 T C HECTD3 Silent p.A199A 0.19 TCGA-RD-A8N9-01 1 47609559 47609559 G A CYP4A22 Missense_Mutation p.R254H 0.17 tolerated(0.2) benign(0.013) TCGA-RD-A8N9-01 1 47746187 47746187 C A STIL Missense_Mutation p.C648F 0.22 deleterious(0) possibly_damaging(0.785) TCGA-RD-A8N9-01 20 20279001 20279001 C T C20orf26 Silent p.Y1131Y 0.13 TCGA-RD-A8N9-01 20 39792739 39792739 C T PLCG1 Missense_Mutation p.P372L 0.12 deleterious(0) probably_damaging(1) TCGA-RD-A8N9-01 20 40730818 40730818 G C PTPRT Missense_Mutation p.F1220L 0.06 tolerated(0.06) probably_damaging(0.987) TCGA-RD-A8N9-01 20 44333226 44333226 C T WFDC13 Missense_Mutation p.R78C 0.10 deleterious(0.01) benign(0.266) TCGA-RD-A8N9-01 20 44680471 44680471 G A SLC12A5 Missense_Mutation p.R803H 0.18 deleterious(0.01) possibly_damaging(0.791) TCGA-RD-A8N9-01 21 42780194 42780194 G A MX2 3'UTR 0.34 TCGA-RD-A8N9-01 22 23154653 23154653 C T IGLV3-10 Silent p.S74S 0.14 TCGA-RD-A8N9-01 22 26422972 26422972 G A MYO18B Silent p.S2344S 0.10 TCGA-RD-A8N9-01 22 32633276 32633276 G T SLC5A4 Missense_Mutation p.Q207K 0.21 deleterious(0) probably_damaging(0.916) TCGA-RD-A8N9-01 22 39832635 39832635 C T TAB1 3'Flank 0.19 TCGA-RD-A8N9-01 2 166908380 166908380 G T SCN1A Silent p.G271G 0.14 TCGA-RD-A8N9-01 2 179197607 179197607 C T OSBPL6 Nonsense_Mutation p.Q166* 0.29 TCGA-RD-A8N9-01 2 202900837 202900837 C A FZD7 Nonsense_Mutation p.Y489* 0.17 TCGA-RD-A8N9-01 2 54483053 54483053 C A TSPYL6 Missense_Mutation p.R79L 0.10 tolerated(0.09) benign(0.004) TCGA-RD-A8N9-01 3 119462954 119462954 C T MAATS1 Missense_Mutation p.R605C 0.18 deleterious(0) probably_damaging(0.999) TCGA-RD-A8N9-01 3 142285059 142285059 C G ATR Missense_Mutation p.V66L 0.43 deleterious_low_confidence(0.02) probably_damaging(0.997) TCGA-RD-A8N9-01 3 146307509 146307509 G A PLSCR5 Silent p.F236F 0.15 TCGA-RD-A8N9-01 3 149216523 149216523 A G TM4SF4 Missense_Mutation p.D139G 0.15 deleterious(0.02) benign(0.093) TCGA-RD-A8N9-01 3 180326498 180326498 G C TTC14 Missense_Mutation p.E434Q 0.27 deleterious(0.02) unknown(0) TCGA-RD-A8N9-01 3 183884692 183884692 G A DVL3 Missense_Mutation p.G376D 0.06 deleterious(0.04) possibly_damaging(0.694) TCGA-RD-A8N9-01 3 184290766 184290766 G A EPHB3 Missense_Mutation p.A220T 0.06 tolerated(0.05) probably_damaging(0.975) TCGA-RD-A8N9-01 3 33668539 33668539 T G CLASP2 Missense_Mutation p.N327H 0.73 deleterious(0.01) probably_damaging(0.999) TCGA-RD-A8N9-01 3 49200593 49200593 C T CCDC71 Missense_Mutation p.R350Q 0.19 tolerated_low_confidence(0.42) unknown(0) TCGA-RD-A8N9-01 3 51696500 51696500 C T RAD54L2 Silent p.P1156P 0.27 TCGA-RD-A8N9-01 4 114290876 114290876 G A ANK2 Missense_Mutation p.R3842Q 0.11 benign(0.013) TCGA-RD-A8N9-01 4 128754042 128754042 C T HSPA4L 3'UTR 0.15 TCGA-RD-A8N9-01 4 158281118 158281118 G A GRIA2 Missense_Mutation p.R705K 0.19 tolerated(1) benign(0.002) TCGA-RD-A8N9-01 4 177648956 177648956 G T VEGFC Silent p.T176T 0.24 TCGA-RD-A8N9-01 4 76797507 76797507 C A PPEF2 Missense_Mutation p.R418L 0.10 tolerated(0.69) benign(0.003) TCGA-RD-A8N9-01 4 77675848 77675848 G A SHROOM3 Silent p.E1404E 0.20 TCGA-RD-A8N9-01 5 11732283 11732283 T C CTNND2 Missense_Mutation p.T47A 0.26 deleterious(0.03) probably_damaging(0.927) TCGA-RD-A8N9-01 5 121188036 121188036 G A FTMT Silent p.A126A 0.17 TCGA-RD-A8N9-01 5 135587359 135587359 C T TRPC7 Silent p.P519P 0.19 TCGA-RD-A8N9-01 5 137424732 137424732 C T WNT8A Missense_Mutation p.L162F 0.22 deleterious(0) probably_damaging(1) TCGA-RD-A8N9-01 5 13865950 13865950 C T DNAH5 Silent p.L1394L 0.12 TCGA-RD-A8N9-01 5 140810887 140810887 C T PCDHGA12 Silent p.D187D 0.11 TCGA-RD-A8N9-01 5 147281191 147281191 C T C5orf46 Splice_Site p.X72_splice 0.11 TCGA-RD-A8N9-01 5 151784462 151784462 C T NMUR2 Silent p.L71L 0.23 TCGA-RD-A8N9-01 5 153144132 153144132 G A GRIA1 Silent p.A664A 0.17 TCGA-RD-A8N9-01 5 35904570 35904570 G A CAPSL 3'UTR 0.10 TCGA-RD-A8N9-01 5 45695890 45695890 C A HCN1 Silent p.L102L 0.09 TCGA-RD-A8N9-01 5 79030639 79030639 A C CMYA5 Missense_Mutation p.E2017D 0.29 probably_damaging(0.935) TCGA-RD-A8N9-01 6 110300898 110300898 G A GPR6 Missense_Mutation p.V195M 0.21 tolerated(0.12) probably_damaging(0.951) TCGA-RD-A8N9-01 6 27775995 27775995 G A HIST1H2AI Missense_Mutation p.G3E 0.11 deleterious_low_confidence(0.03) unknown(0) TCGA-RD-A8N9-01 6 51524311 51524311 A C PKHD1 Missense_Mutation p.I3538S 0.26 deleterious(0.02) benign(0.372) TCGA-RD-A8N9-01 6 63990394 63990394 C T LGSN Silent p.A354A 0.24 TCGA-RD-A8N9-01 6 7571732 7571732 G A DSP Silent p.R606R 0.16 TCGA-RD-A8N9-01 6 88854841 88854841 A C CNR1 Silent p.T51T 0.23 TCGA-RD-A8N9-01 7 100686009 100686009 G A MUC17 Missense_Mutation p.S3771N 0.21 benign(0.004) TCGA-RD-A8N9-01 7 1008969 1008973 CCTGA - COX19 3'UTR 0.15 TCGA-RD-A8N9-01 7 111584879 111584879 G T DOCK4 Missense_Mutation p.H277Q 0.10 tolerated(0.49) possibly_damaging(0.463) TCGA-RD-A8N9-01 7 150325356 150325356 G A GIMAP6 Silent p.D110D 0.09 TCGA-RD-A8N9-01 7 3991488 3991488 C T SDK1 Silent p.C362C 0.40 TCGA-RD-A8N9-01 7 72658645 72658645 G A GTF2IRD2P1 RNA 0.21 TCGA-RD-A8N9-01 7 95439731 95439731 G A DYNC1I1 Missense_Mutation p.V46I 0.09 tolerated(0.27) benign(0.001) TCGA-RD-A8N9-01 8 144941154 144941154 G T EPPK1 Silent p.R2090R 0.09 TCGA-RD-A8N9-01 8 145667637 145667637 A T TONSL Missense_Mutation p.V246E 0.61 tolerated(0.27) benign(0.179) TCGA-RD-A8N9-01 8 16935303 16935303 A G MICU3 Silent p.Q193Q 0.68 TCGA-RD-A8N9-01 8 41563684 41563684 C T ANK1 Missense_Mutation p.V725I 0.16 deleterious(0) benign(0.291) TCGA-RD-A8N9-01 8 42260947 42260947 A C VDAC3 Missense_Mutation p.K225Q 0.14 deleterious(0.04) benign(0.282) TCGA-RD-A8N9-01 8 95802137 95802137 G A DPY19L4 Silent p.%3D 0.13 TCGA-RD-A8N9-01 9 123526827 123526827 G A FBXW2 3'UTR 0.11 TCGA-RD-A8N9-01 9 123776310 123776312 AAC - C5 In_Frame_Del p.C699del 0.34 TCGA-RD-A8N9-01 9 126439026 126439026 G T DENND1A Silent p.I115I 0.11 TCGA-RD-A8N9-01 9 139837000 139837000 T G FBXW5 Missense_Mutation p.Q225P 0.25 deleterious(0) probably_damaging(0.944) TCGA-RD-A8N9-01 9 916907 916907 G A DMRT1 Missense_Mutation p.V323I 0.16 tolerated(0.06) benign(0.218) TCGA-RD-A8N9-01 X 119505007 119505007 C T ATP1B4 Silent p.N168N 0.32 TCGA-RD-A8N9-01 X 120182120 120182120 C T GLUD2 Silent p.T194T 0.10 TCGA-RD-A8N9-01 X 125686535 125686535 G A DCAF12L1 Silent p.D19D 0.12 TCGA-RD-A8N9-01 X 142718165 142718165 T C SLITRK4 Missense_Mutation p.K254E 0.31 tolerated(0.12) probably_damaging(0.98) TCGA-RD-A8N9-01 X 49040236 49040236 C A PRICKLE3 Missense_Mutation p.C88F 0.13 deleterious(0.01) possibly_damaging(0.566) TCGA-RD-A8N9-01 X 49837207 49837207 G A CLCN5 Missense_Mutation p.G127S 0.14 deleterious(0.01) probably_damaging(1) TCGA-RD-A8N9-01 X 53436108 53436108 A G SMC1A Missense_Mutation p.L477P 0.11 deleterious(0) probably_damaging(0.997) TCGA-RD-A8N9-01 X 83127906 83127906 A C CYLC1 Silent p.R64R 0.19 TCGA-RD-A8N9-01 X 92927706 92927706 G A NAP1L3 Missense_Mutation p.P200S 0.25 tolerated(0.22) benign(0.002) TCGA-RD-A8NB-01 10 104240909 104240910 TC - ACTR1A Frame_Shift_Del p.R336Tfs*18 0.14 TCGA-RD-A8NB-01 10 106802840 106802840 C T SORCS3 Missense_Mutation p.R328W 0.09 deleterious(0) probably_damaging(0.959) TCGA-RD-A8NB-01 10 124594484 124594484 C T CUZD1 Missense_Mutation p.E374K 0.12 tolerated(0.11) probably_damaging(1) TCGA-RD-A8NB-01 10 126655251 126655251 C A ZRANB1 Silent p.R301R 0.06 TCGA-RD-A8NB-01 10 128114579 128114579 C T C10orf90 Missense_Mutation p.R681H 0.12 deleterious(0) probably_damaging(0.999) TCGA-RD-A8NB-01 10 134261461 134261461 G A C10orf91 Missense_Mutation p.V112I 0.11 tolerated_low_confidence(0.59) benign(0.198) TCGA-RD-A8NB-01 10 135165970 135165970 G A PRAP1 3'UTR 0.21 TCGA-RD-A8NB-01 10 14893269 14893269 G A HSPA14 Silent p.P173P 0.08 TCGA-RD-A8NB-01 10 3147620 3147620 C T PFKP Missense_Mutation p.A234V 0.07 deleterious(0) probably_damaging(1) TCGA-RD-A8NB-01 10 34408585 34408585 G A PARD3 Silent p.R1211R 0.33 TCGA-RD-A8NB-01 10 49661404 49661404 C T ARHGAP22 Missense_Mutation p.V327I 0.11 deleterious(0) possibly_damaging(0.887) TCGA-RD-A8NB-01 10 5149705 5149705 C T AKR1C3 3'UTR 0.09 TCGA-RD-A8NB-01 10 55566571 55566572 - T PCDH15 Frame_Shift_Ins p.M1605Nfs*18 0.09 TCGA-RD-A8NB-01 10 5781719 5781719 A G FAM208B Missense_Mutation p.Y529C 0.10 tolerated(0.9) benign(0.003) TCGA-RD-A8NB-01 10 63170315 63170315 G A TMEM26 Missense_Mutation p.A291V 0.11 tolerated(0.95) benign(0.021) TCGA-RD-A8NB-01 10 63212647 63212647 A G TMEM26 Splice_Site p.X64_splice 0.12 TCGA-RD-A8NB-01 10 71136805 71136805 C T HK1 Nonsense_Mutation p.R335* 0.19 TCGA-RD-A8NB-01 10 72307102 72307102 G A PALD1 Missense_Mutation p.R721H 0.07 tolerated(0.12) benign(0.009) TCGA-RD-A8NB-01 10 74894572 74894572 C A ECD Splice_Site p.X602_splice 0.13 TCGA-RD-A8NB-01 10 75264678 75264678 C T USP54 Missense_Mutation p.R1414H 0.11 deleterious(0) benign(0.354) TCGA-RD-A8NB-01 10 75855457 75855457 G A VCL Silent p.L529L 0.08 TCGA-RD-A8NB-01 10 7605303 7605303 C A ITIH5 Missense_Mutation p.G858W 0.10 deleterious(0) benign(0.069) TCGA-RD-A8NB-01 10 82266995 82266995 C T TSPAN14 Silent p.S48S 0.10 TCGA-RD-A8NB-01 10 88416977 88416977 A G OPN4 Missense_Mutation p.M106V 0.12 tolerated_low_confidence(1) benign(0) TCGA-RD-A8NB-01 10 91469803 91469803 A - KIF20B Frame_Shift_Del p.T159Hfs*18 0.11 TCGA-RD-A8NB-01 10 94230053 94230053 C T IDE Silent p.R722R 0.12 TCGA-RD-A8NB-01 10 97402812 97402812 G A ALDH18A1 Silent p.A80A 0.11 TCGA-RD-A8NB-01 10 98802762 98802762 C T SLIT1 Missense_Mutation p.R687Q 0.14 deleterious(0) probably_damaging(0.986) TCGA-RD-A8NB-01 11 101786078 101786078 C T KIAA1377 Silent p.D21D 0.16 TCGA-RD-A8NB-01 11 102743660 102743660 G A MMP12 RNA 0.22 TCGA-RD-A8NB-01 11 1028329 1028329 G A MUC6 Silent p.I550I 0.12 TCGA-RD-A8NB-01 11 108202657 108202657 C A ATM Missense_Mutation p.L2561M 0.10 tolerated(0.07) probably_damaging(0.962) TCGA-RD-A8NB-01 11 110036322 110036322 C T ZC3H12C Nonsense_Mutation p.R838* 0.21 TCGA-RD-A8NB-01 11 111657064 111657064 G T ALG9 3'UTR 0.09 TCGA-RD-A8NB-01 11 113265663 113265663 G A ANKK1 Missense_Mutation p.G165S 0.17 deleterious(0.03) possibly_damaging(0.906) TCGA-RD-A8NB-01 11 11362459 11362459 G A GALNT18 Silent p.T395T 0.09 TCGA-RD-A8NB-01 11 115047097 115047097 A - CADM1 3'UTR 0.10 TCGA-RD-A8NB-01 11 117651305 117651305 G - DSCAML1 Frame_Shift_Del p.S150Pfs*129 0.09 TCGA-RD-A8NB-01 11 118261448 118261448 C T UBE4A Nonsense_Mutation p.R956* 0.11 TCGA-RD-A8NB-01 11 118347605 118347605 G A KMT2A Missense_Mutation p.R1081Q 0.07 probably_damaging(0.96) TCGA-RD-A8NB-01 11 119244053 119244055 CTT - USP2 In_Frame_Del p.K46del 0.20 TCGA-RD-A8NB-01 11 120318951 120318951 T C ARHGEF12 Missense_Mutation p.M544T 0.12 deleterious(0.05) benign(0.271) TCGA-RD-A8NB-01 11 12261001 12261001 C T MICAL2 Missense_Mutation p.R695C 0.17 tolerated(0.09) benign(0.002) TCGA-RD-A8NB-01 11 122722431 122722431 A G CRTAM Missense_Mutation p.H75R 0.12 tolerated(0.12) benign(0.189) TCGA-RD-A8NB-01 11 122738794 122738794 G A CRTAM Silent p.E346E 0.12 TCGA-RD-A8NB-01 11 124757317 124757317 C T ROBO4 Missense_Mutation p.R712H 0.12 tolerated(0.15) benign(0.004) TCGA-RD-A8NB-01 11 130784395 130784395 C T SNX19 Silent p.P480P 0.09 TCGA-RD-A8NB-01 11 14284426 14284426 G A RP11-21L19.1 RNA 0.19 TCGA-RD-A8NB-01 11 18231939 18231939 G A RP11-113D6.10 3'UTR 0.15 TCGA-RD-A8NB-01 11 18269465 18269465 T C SAA2 Intron 0.08 TCGA-RD-A8NB-01 11 20414482 20414482 G T PRMT3 Missense_Mutation p.V113L 0.13 benign(0.001) TCGA-RD-A8NB-01 11 2940592 2940592 C A SLC22A18 Silent p.A273A 0.11 TCGA-RD-A8NB-01 11 30601840 30601840 C T MPPED2 Silent p.T27T 0.10 TCGA-RD-A8NB-01 11 31785036 31785037 CT - ELP4 Intron 0.09 TCGA-RD-A8NB-01 11 34904963 34904966 ATTC - APIP Frame_Shift_Del p.E183Tfs*41 0.10 TCGA-RD-A8NB-01 11 36614223 36614223 T - RAG2 Frame_Shift_Del p.K499Sfs*4 0.09 TCGA-RD-A8NB-01 11 4510924 4510924 G A OR52K1 Missense_Mutation p.R265H 0.13 deleterious(0.01) benign(0.079) TCGA-RD-A8NB-01 11 46404250 46404250 A G MDK Missense_Mutation p.I120V 0.12 tolerated(0.72) probably_damaging(0.987) TCGA-RD-A8NB-01 11 4661409 4661409 C T OR51D1 Missense_Mutation p.A130V 0.16 tolerated(0.1) probably_damaging(0.999) TCGA-RD-A8NB-01 11 4661857 4661857 T A OR51D1 Silent p.G279G 0.12 TCGA-RD-A8NB-01 11 4869917 4869917 C T OR51S1 Missense_Mutation p.M174I 0.08 deleterious(0.01) probably_damaging(0.989) TCGA-RD-A8NB-01 11 5246897 5246897 T C HBB Silent p.P125P 0.12 TCGA-RD-A8NB-01 11 55419081 55419081 C T OR4S2 Silent p.A234A 0.15 TCGA-RD-A8NB-01 11 55944785 55944785 C T OR5J2 Missense_Mutation p.A231V 0.11 tolerated(0.06) benign(0.279) TCGA-RD-A8NB-01 11 56344664 56344664 G A OR5M10 Silent p.Y178Y 0.07 TCGA-RD-A8NB-01 11 619518 619518 G A CDHR5 Silent p.L417L 0.10 TCGA-RD-A8NB-01 11 62677784 62677784 G A CHRM1 Silent p.C263C 0.10 TCGA-RD-A8NB-01 11 6292339 6292339 C A CCKBR Missense_Mutation p.L304M 0.14 tolerated(0.51) benign(0.038) TCGA-RD-A8NB-01 11 63919786 63919786 C T MACROD1 Silent p.P126P 0.11 TCGA-RD-A8NB-01 11 64055348 64055348 T G GPR137 Missense_Mutation p.L246R 0.12 deleterious(0) probably_damaging(0.964) TCGA-RD-A8NB-01 11 64108917 64108917 C T CCDC88B Missense_Mutation p.R158C 0.10 deleterious(0.02) benign(0.212) TCGA-RD-A8NB-01 11 64359373 64359373 G A SLC22A12 Silent p.P115P 0.18 TCGA-RD-A8NB-01 11 64397945 64397945 C T NRXN2 Missense_Mutation p.R1229H 0.14 deleterious(0) probably_damaging(0.992) TCGA-RD-A8NB-01 11 65108472 65108472 C T DPF2 Missense_Mutation p.R77W 0.13 deleterious(0) probably_damaging(0.998) TCGA-RD-A8NB-01 11 65746369 65746369 G A SART1 Missense_Mutation p.G790S 0.15 tolerated(0.23) possibly_damaging(0.812) TCGA-RD-A8NB-01 11 65827317 65827317 T C SF3B2 Missense_Mutation p.V489A 0.11 deleterious(0.02) possibly_damaging(0.462) TCGA-RD-A8NB-01 11 66626460 66626460 C T LRFN4 Silent p.T415T 0.11 TCGA-RD-A8NB-01 11 68181417 68181417 G A LRP5 Missense_Mutation p.G922S 0.09 tolerated(0.42) benign(0.001) TCGA-RD-A8NB-01 11 72423635 72423635 C T ARAP1 Intron 0.11 TCGA-RD-A8NB-01 11 72945328 72945328 G A P2RY2 Missense_Mutation p.V42M 0.09 deleterious(0) benign(0.283) TCGA-RD-A8NB-01 11 73806333 73806333 A G C2CD3 Missense_Mutation p.Y1034H 0.17 tolerated(0.33) benign(0.028) TCGA-RD-A8NB-01 11 83874538 83874538 A C DLG2 Missense_Mutation p.I197S 0.16 tolerated(0.59) probably_damaging(0.983) TCGA-RD-A8NB-01 11 86055837 86055838 - T C11orf73 Intron 0.10 TCGA-RD-A8NB-01 11 88029376 88029376 G A CTSC Missense_Mutation p.R272C 0.17 deleterious(0.03) possibly_damaging(0.893) TCGA-RD-A8NB-01 11 9048996 9048996 G - SCUBE2 Frame_Shift_Del p.K816Sfs*5 0.21 TCGA-RD-A8NB-01 12 103249032 103249032 G T PAH Silent p.S196S 0.14 TCGA-RD-A8NB-01 12 106480580 106480580 G A NUAK1 Missense_Mutation p.R149C 0.19 deleterious(0) probably_damaging(1) TCGA-RD-A8NB-01 12 109290825 109290826 - AG DAO Frame_Shift_Ins p.G222Efs*30 0.14 TCGA-RD-A8NB-01 12 109523551 109523551 C T USP30 Nonsense_Mutation p.R457* 0.10 TCGA-RD-A8NB-01 12 11199617 11199617 A G TAS2R63P 3'Flank 0.33 TCGA-RD-A8NB-01 12 118590136 118590136 C T TAOK3 Missense_Mutation p.A811T 0.10 deleterious(0.04) possibly_damaging(0.581) TCGA-RD-A8NB-01 12 12038875 12038875 A G ETV6 Missense_Mutation p.T390A 0.16 deleterious(0.01) probably_damaging(0.917) TCGA-RD-A8NB-01 12 121442063 121442063 C T C12orf43 Missense_Mutation p.G228R 0.17 tolerated(0.15) benign(0.046) TCGA-RD-A8NB-01 12 123069516 123069516 T C KNTC1 Silent p.D1171D 0.13 TCGA-RD-A8NB-01 12 124359925 124359925 C T DNAH10 Missense_Mutation p.R2578C 0.16 probably_damaging(0.999) TCGA-RD-A8NB-01 12 12630178 12630178 C T DUSP16 Silent p.T529T 0.12 TCGA-RD-A8NB-01 12 129293999 129293999 A - SLC15A4 Frame_Shift_Del p.L344Yfs*6 0.11 TCGA-RD-A8NB-01 12 130833797 130833797 C T PIWIL1 Missense_Mutation p.P250S 0.18 deleterious(0.02) benign(0.4) TCGA-RD-A8NB-01 12 132554046 132554046 G A EP400 Missense_Mutation p.A2961T 0.10 possibly_damaging(0.457) TCGA-RD-A8NB-01 12 14613822 14613822 C A ATF7IP Missense_Mutation p.P851H 0.10 deleterious_low_confidence(0) unknown(0) TCGA-RD-A8NB-01 12 15035957 15035957 G A MGP Missense_Mutation p.A65V 0.11 deleterious(0) probably_damaging(0.919) TCGA-RD-A8NB-01 12 18891571 18891571 C T CAPZA3 Silent p.C123C 0.10 TCGA-RD-A8NB-01 12 2061636 2061637 - A DCP1B Frame_Shift_Ins p.L490Ffs*104 0.10 TCGA-RD-A8NB-01 12 21392130 21392130 A - SLCO1B1 3'UTR 0.13 TCGA-RD-A8NB-01 12 21788585 21788585 C T LDHB Missense_Mutation p.R299Q 0.14 tolerated(0.13) benign(0.001) TCGA-RD-A8NB-01 12 21995378 21995378 T G ABCC9 Missense_Mutation p.T1115P 0.10 tolerated(0.06) benign(0.273) TCGA-RD-A8NB-01 12 2595427 2595427 A T CACNA1C Silent p.A305A 0.12 TCGA-RD-A8NB-01 12 32491914 32491914 G A BICD1 Splice_Site p.X922_splice 0.15 TCGA-RD-A8NB-01 12 39724583 39724583 G T KIF21A Missense_Mutation p.P1095H 0.18 deleterious(0) probably_damaging(0.997) TCGA-RD-A8NB-01 12 39735383 39735383 C T KIF21A Silent p.E615E 0.21 TCGA-RD-A8NB-01 12 48133955 48133955 C T RAPGEF3 Missense_Mutation p.R781Q 0.15 deleterious(0.01) probably_damaging(0.971) TCGA-RD-A8NB-01 12 49433982 49433982 G A KMT2D Missense_Mutation p.T2524M 0.16 probably_damaging(0.927) TCGA-RD-A8NB-01 12 50410449 50410449 C T RACGAP1 Missense_Mutation p.R17H 0.11 tolerated(0.37) benign(0.003) TCGA-RD-A8NB-01 12 51584214 51584214 A G POU6F1 Missense_Mutation p.F241S 0.14 deleterious(0) possibly_damaging(0.818) TCGA-RD-A8NB-01 12 51759303 51759303 C T GALNT6 Missense_Mutation p.R242Q 0.15 deleterious(0.01) probably_damaging(0.932) TCGA-RD-A8NB-01 12 52636839 52636839 T C KRT7 Missense_Mutation p.L301P 0.11 deleterious(0) probably_damaging(1) TCGA-RD-A8NB-01 12 52841148 52841148 T C KRT6B Silent p.L507L 0.09 TCGA-RD-A8NB-01 12 52964497 52964497 C T KRT74 Missense_Mutation p.A322T 0.17 deleterious(0.04) benign(0.19) TCGA-RD-A8NB-01 12 52985348 52985348 C T KRT72 Missense_Mutation p.R288Q 0.09 deleterious(0.03) possibly_damaging(0.908) TCGA-RD-A8NB-01 12 53069126 53069126 C T KRT1 Missense_Mutation p.G596S 0.13 tolerated_low_confidence(0.58) unknown(0) TCGA-RD-A8NB-01 12 53670886 53670886 C T ESPL1 Missense_Mutation p.R654W 0.18 deleterious(0) possibly_damaging(0.696) TCGA-RD-A8NB-01 12 53853103 53853103 G A PCBP2 Silent p.P97P 0.15 TCGA-RD-A8NB-01 12 53876430 53876430 T C MAP3K12 Silent p.S719S 0.12 TCGA-RD-A8NB-01 12 56481806 56481806 C T ERBB3 Missense_Mutation p.A245V 0.14 tolerated(0.17) possibly_damaging(0.875) TCGA-RD-A8NB-01 12 56490269 56490269 T C ERBB3 Intron 0.09 TCGA-RD-A8NB-01 12 57627083 57627083 C - SHMT2 Frame_Shift_Del p.H328Tfs*8 0.16 TCGA-RD-A8NB-01 12 65082110 65082110 A G RASSF3 Missense_Mutation p.T112A 0.11 tolerated(0.58) possibly_damaging(0.868) TCGA-RD-A8NB-01 12 69090690 69090690 C A NUP107 Silent p.I180I 0.08 TCGA-RD-A8NB-01 12 69233332 69233332 C G MDM2 Missense_Mutation p.D399E 0.08 tolerated(0.34) probably_damaging(0.987) TCGA-RD-A8NB-01 12 6946183 6946183 G A LEPREL2 Missense_Mutation p.R497H 0.14 deleterious(0) benign(0.077) TCGA-RD-A8NB-01 12 6974386 6974386 C T USP5 Silent p.Y819Y 0.21 TCGA-RD-A8NB-01 12 6979509 6979509 A G TPI1 Missense_Mutation p.K275E 0.10 deleterious(0.01) possibly_damaging(0.876) TCGA-RD-A8NB-01 12 77449826 77449826 A T E2F7 Missense_Mutation p.F60I 0.10 tolerated(0.44) benign(0.076) TCGA-RD-A8NB-01 12 93171877 93171877 C A EEA1 Missense_Mutation p.A1245S 0.18 deleterious(0.01) benign(0.145) TCGA-RD-A8NB-01 12 97045507 97045507 C A C12orf55 Missense_Mutation p.L1672I 0.12 tolerated(0.33) benign(0.013) TCGA-RD-A8NB-01 12 97885710 97885710 C T MIR1251 RNA 0.18 TCGA-RD-A8NB-01 13 102029322 102029322 A G NALCN Missense_Mutation p.F154S 0.11 deleterious(0) possibly_damaging(0.898) TCGA-RD-A8NB-01 13 103449341 103449341 G A KDELC1 Silent p.G67G 0.12 TCGA-RD-A8NB-01 13 113055412 113055412 G A SPACA7 Missense_Mutation p.D127N 0.10 tolerated(0.61) benign(0.29) TCGA-RD-A8NB-01 13 114514859 114514859 C - TMEM255B Frame_Shift_Del p.Y324Tfs*9 0.08 TCGA-RD-A8NB-01 13 28830500 28830502 AGA - PAN3 In_Frame_Del p.R360del 0.09 TCGA-RD-A8NB-01 13 31722600 31722600 C T HSPH1 Silent p.P385P 0.06 TCGA-RD-A8NB-01 13 36141125 36141125 C A NBEA Missense_Mutation p.L2336I 0.08 tolerated(0.09) benign(0.065) TCGA-RD-A8NB-01 13 38156560 38156560 G A POSTN Silent p.N445N 0.13 TCGA-RD-A8NB-01 13 42734201 42734201 G A DGKH Missense_Mutation p.A262T 0.09 tolerated(0.26) possibly_damaging(0.555) TCGA-RD-A8NB-01 13 50108253 50108253 G A RCBTB1 3'UTR 0.12 TCGA-RD-A8NB-01 13 50279803 50279803 G A KPNA3 Silent p.A442A 0.14 TCGA-RD-A8NB-01 13 53241017 53241017 T C SUGT1 Missense_Mutation p.I229T 0.14 deleterious(0.03) benign(0.156) TCGA-RD-A8NB-01 13 58206895 58206895 C T PCDH17 Missense_Mutation p.P72L 0.15 deleterious(0.01) probably_damaging(0.997) TCGA-RD-A8NB-01 13 58208512 58208512 G A PCDH17 Missense_Mutation p.R611H 0.09 tolerated(0.1) benign(0.022) TCGA-RD-A8NB-01 13 76397875 76397875 T C LMO7 Missense_Mutation p.S706P 0.11 tolerated(0.84) benign(0.002) TCGA-RD-A8NB-01 13 99091068 99091068 G A FARP1 Missense_Mutation p.R762H 0.13 deleterious(0) probably_damaging(0.999) TCGA-RD-A8NB-01 13 99093013 99093013 C T FARP1 Missense_Mutation p.R907C 0.17 deleterious(0) probably_damaging(0.985) TCGA-RD-A8NB-01 14 102808493 102808493 C T ZNF839 Missense_Mutation p.R921C 0.18 deleterious(0.03) possibly_damaging(0.533) TCGA-RD-A8NB-01 14 103371574 103371574 G A TRAF3 Missense_Mutation p.R387Q 0.09 tolerated(0.24) benign(0.031) TCGA-RD-A8NB-01 14 103923521 103923521 A - MARK3 Frame_Shift_Del p.E154Kfs*33 0.12 TCGA-RD-A8NB-01 14 105477837 105477837 T C CDCA4 Missense_Mutation p.S144G 0.11 tolerated(0.25) benign(0) TCGA-RD-A8NB-01 14 106321862 106321862 G A IGHM Silent p.F124F 0.09 TCGA-RD-A8NB-01 14 106622075 106622075 C T IGHV3-16 Missense_Mutation p.R57H 0.14 deleterious_low_confidence(0.03) benign(0.165) TCGA-RD-A8NB-01 14 19553654 19553654 G A POTEG Missense_Mutation p.V80M 0.08 tolerated_low_confidence(0.06) benign(0.041) TCGA-RD-A8NB-01 14 22038183 22038183 T C OR10G3 Silent p.T231T 0.21 TCGA-RD-A8NB-01 14 22564757 22564757 C T TRDV1 Missense_Mutation p.R70C 0.08 deleterious(0.04) benign(0.286) TCGA-RD-A8NB-01 14 24613233 24613233 A - PSME2 Frame_Shift_Del p.F168Sfs*17 0.09 TCGA-RD-A8NB-01 14 24683766 24683766 G T MDP1 Silent p.L83L 0.18 TCGA-RD-A8NB-01 14 24707597 24707597 C T GMPR2 Silent p.G299G 0.13 TCGA-RD-A8NB-01 14 64988863 64988863 G A ZBTB1 Missense_Mutation p.R214Q 0.07 deleterious(0.01) probably_damaging(0.978) TCGA-RD-A8NB-01 14 68228987 68228987 T C ZFYVE26 Missense_Mutation p.H2101R 0.06 tolerated(0.36) benign(0.047) TCGA-RD-A8NB-01 14 69341522 69341522 G A ACTN1 3'UTR 0.22 TCGA-RD-A8NB-01 14 74180227 74180227 A G PNMA1 Missense_Mutation p.L39P 0.13 deleterious(0.02) benign(0.238) TCGA-RD-A8NB-01 14 74971831 74971831 G - LTBP2 Frame_Shift_Del p.T1409Pfs*82 0.21 TCGA-RD-A8NB-01 14 88946277 88946277 C T PTPN21 Missense_Mutation p.A500T 0.12 tolerated(0.36) benign(0.006) TCGA-RD-A8NB-01 14 92278798 92278798 A T TC2N Silent p.P53P 0.15 TCGA-RD-A8NB-01 14 93119222 93119222 C T RIN3 Nonsense_Mutation p.Q610* 0.14 TCGA-RD-A8NB-01 15 100636667 100636667 G A ADAMTS17 Silent p.D677D 0.16 TCGA-RD-A8NB-01 15 25287138 25287138 A G SNORD109A RNA 0.14 TCGA-RD-A8NB-01 15 25616858 25616858 A - UBE3A Frame_Shift_Del p.S158Lfs*21 0.10 TCGA-RD-A8NB-01 15 28370220 28370220 A G HERC2 Missense_Mutation p.C4308R 0.13 probably_damaging(1) TCGA-RD-A8NB-01 15 35085557 35085557 T C ACTC1 Missense_Mutation p.K115E 0.16 deleterious_low_confidence(0) benign(0.043) TCGA-RD-A8NB-01 15 40509698 40509698 A G BUB1B Missense_Mutation p.I894V 0.08 deleterious(0.05) possibly_damaging(0.639) TCGA-RD-A8NB-01 15 40656015 40656015 G - DISP2 Frame_Shift_Del p.G105Afs*60 0.10 TCGA-RD-A8NB-01 15 40661570 40661570 G A DISP2 Missense_Mutation p.R1086H 0.24 deleterious(0.01) probably_damaging(1) TCGA-RD-A8NB-01 15 42742477 42742477 G A ZNF106 Missense_Mutation p.P642S 0.06 tolerated_low_confidence(0.27) benign(0.006) TCGA-RD-A8NB-01 15 44087336 44087336 G A SERINC4 Silent p.C473C 0.14 TCGA-RD-A8NB-01 15 45003786 45003789 TCTT - B2M Frame_Shift_Del p.S16Afs*27 0.10 TCGA-RD-A8NB-01 15 48737604 48737604 A G FBN1 Silent p.Y1962Y 0.18 TCGA-RD-A8NB-01 15 50152509 50152509 G A ATP8B4 Missense_Mutation p.P1154L 0.10 tolerated(0.19) benign(0.001) TCGA-RD-A8NB-01 15 56386181 56386181 T - RFX7 Frame_Shift_Del p.I1249* 0.17 TCGA-RD-A8NB-01 15 58938330 58938330 T - ADAM10 Frame_Shift_Del p.N220Ifs*23 0.09 TCGA-RD-A8NB-01 15 59964856 59964856 G A BNIP2 Silent p.Y306Y 0.19 TCGA-RD-A8NB-01 15 67571730 67571730 T C IQCH Intron 0.15 TCGA-RD-A8NB-01 15 69079843 69079843 C - ANP32A Frame_Shift_Del p.G79Afs*15 0.11 TCGA-RD-A8NB-01 15 71953002 71953002 G A THSD4 Missense_Mutation p.R429H 0.08 deleterious(0) possibly_damaging(0.86) TCGA-RD-A8NB-01 15 72499603 72499603 C A PKM Silent p.L284L 0.11 TCGA-RD-A8NB-01 15 73409028 73409028 T A NEO1 Nonsense_Mutation p.L93* 0.11 TCGA-RD-A8NB-01 15 74425848 74425848 C T ISLR2 Silent p.R251R 0.09 TCGA-RD-A8NB-01 15 75500392 75500392 C T C15orf39 Missense_Mutation p.P668L 0.21 tolerated(0.07) benign(0) TCGA-RD-A8NB-01 15 75761254 75761254 C T PTPN9 Silent p.T546T 0.12 TCGA-RD-A8NB-01 15 77425553 77425553 G A PEAK1 Nonsense_Mutation p.R1291* 0.14 TCGA-RD-A8NB-01 15 78894200 78894200 C T CHRNA3 Missense_Mutation p.V262I 0.17 deleterious(0.01) probably_damaging(0.997) TCGA-RD-A8NB-01 15 78921836 78921836 G A CHRNB4 Silent p.L271L 0.08 TCGA-RD-A8NB-01 15 82512532 82512532 C T EFTUD1 Missense_Mutation p.R444H 0.12 tolerated(0.56) benign(0.416) TCGA-RD-A8NB-01 15 85164338 85164338 G A ZSCAN2 Silent p.K304K 0.20 TCGA-RD-A8NB-01 15 86266404 86266404 C T AKAP13 Missense_Mutation p.R2204C 0.11 deleterious(0) probably_damaging(0.999) TCGA-RD-A8NB-01 15 90611023 90611023 C T ZNF710 Silent p.F218F 0.09 TCGA-RD-A8NB-01 15 91447439 91447439 T C MAN2A2 Translation_Start_Site p.M1? 0.09 deleterious(0) probably_damaging(0.992) TCGA-RD-A8NB-01 15 91448817 91448817 T C MAN2A2 Silent p.T133T 0.21 TCGA-RD-A8NB-01 16 10274217 10274217 A G GRIN2A Missense_Mutation p.W18R 0.21 deleterious(0.03) benign(0.146) TCGA-RD-A8NB-01 16 15790631 15790631 T C NDE1 Silent p.G287G 0.17 TCGA-RD-A8NB-01 16 16272808 16272808 G A ABCC6 Silent p.S754S 0.19 TCGA-RD-A8NB-01 16 1818911 1818911 C G MAPK8IP3 3'UTR 0.30 TCGA-RD-A8NB-01 16 18860565 18860565 G A SMG1 Missense_Mutation p.S1866L 0.16 deleterious(0.01) benign(0.016) TCGA-RD-A8NB-01 16 19278368 19278368 C T SYT17 Silent p.R465R 0.28 TCGA-RD-A8NB-01 16 2018521 2018521 G A RNF151 Silent p.T111T 0.38 TCGA-RD-A8NB-01 16 20787159 20787159 A G ACSM3 Splice_Site p.X74_splice 0.10 TCGA-RD-A8NB-01 16 2124338 2124338 G A TSC2 Silent p.T831T 0.07 TCGA-RD-A8NB-01 16 2156840 2156840 C T PKD1 Missense_Mutation p.R2392H 0.17 benign(0.036) TCGA-RD-A8NB-01 16 24358083 24358083 C T CACNG3 Silent p.I80I 0.10 TCGA-RD-A8NB-01 16 24966042 24966042 G A ARHGAP17 Missense_Mutation p.A245V 0.12 tolerated(0.63) benign(0.005) TCGA-RD-A8NB-01 16 27374375 27374375 G A IL4R Missense_Mutation p.V568I 0.18 tolerated(0.07) benign(0.011) TCGA-RD-A8NB-01 16 27761307 27761307 C T KIAA0556 Missense_Mutation p.S1009L 0.15 tolerated(0.13) benign(0.012) TCGA-RD-A8NB-01 16 28847350 28847350 G - ATXN2L Frame_Shift_Del p.Q1002Kfs*95 0.09 TCGA-RD-A8NB-01 16 30128031 30128031 C A MAPK3 Missense_Mutation p.Q366H 0.10 deleterious(0.01) benign(0.146) TCGA-RD-A8NB-01 16 30779270 30779270 C G RNF40 Missense_Mutation p.H495Q 0.13 tolerated(1) benign(0.003) TCGA-RD-A8NB-01 16 30794511 30794511 C A ZNF629 Missense_Mutation p.G380C 0.23 deleterious(0) probably_damaging(1) TCGA-RD-A8NB-01 16 31072738 31072738 G A ZNF668 Missense_Mutation p.A527V 0.13 tolerated(0.54) benign(0.001) TCGA-RD-A8NB-01 16 31090569 31090569 G A ZNF646 Missense_Mutation p.R975H 0.09 deleterious(0.01) probably_damaging(0.996) TCGA-RD-A8NB-01 16 31199678 31199678 G A FUS Missense_Mutation p.E278K 0.13 tolerated(0.06) benign(0.031) TCGA-RD-A8NB-01 16 31371302 31371302 G A ITGAX Missense_Mutation p.R208H 0.09 tolerated(0.12) benign(0.093) TCGA-RD-A8NB-01 16 3642786 3642786 G A SLX4 Silent p.A747A 0.11 TCGA-RD-A8NB-01 16 4016654 4016654 C T ADCY9 Missense_Mutation p.A1062T 0.10 deleterious(0) probably_damaging(0.999) TCGA-RD-A8NB-01 16 48162622 48162623 - G ABCC12 Frame_Shift_Ins p.S422Ifs*25 0.20 TCGA-RD-A8NB-01 16 49315338 49315338 C T CBLN1 Silent p.A13A 0.36 TCGA-RD-A8NB-01 16 55527167 55527167 C T MMP2 Silent p.I478I 0.08 TCGA-RD-A8NB-01 16 58589743 58589743 C T CNOT1 Missense_Mutation p.S850N 0.12 tolerated(0.06) benign(0.063) TCGA-RD-A8NB-01 16 58590879 58590879 C T CNOT1 Missense_Mutation p.G784D 0.13 tolerated(0.06) benign(0.001) TCGA-RD-A8NB-01 16 67201426 67201426 C T HSF4 Missense_Mutation p.P260S 0.13 deleterious(0.02) benign(0.009) TCGA-RD-A8NB-01 16 67314397 67314397 T C PLEKHG4 Silent p.P150P 0.11 TCGA-RD-A8NB-01 16 67327683 67327683 C T KCTD19 Missense_Mutation p.S661N 0.13 tolerated(0.4) benign(0.002) TCGA-RD-A8NB-01 16 67683367 67683367 G T RLTPR Silent p.S588S 0.15 TCGA-RD-A8NB-01 16 67963848 67963848 C T CTRL Missense_Mutation p.A262T 0.06 deleterious(0.03) benign(0.049) TCGA-RD-A8NB-01 16 68021432 68021432 G A DPEP2 Missense_Mutation p.P480S 0.12 tolerated_low_confidence(0.98) benign(0.034) TCGA-RD-A8NB-01 16 700066 700066 A C WDR90 Missense_Mutation p.S60R 0.13 deleterious(0) benign(0.038) TCGA-RD-A8NB-01 16 70154498 70154498 C T PDPR Missense_Mutation p.R35C 0.09 tolerated(0.08) benign(0.163) TCGA-RD-A8NB-01 16 71692707 71692707 T A PHLPP2 Missense_Mutation p.K666I 0.14 deleterious(0) probably_damaging(0.995) TCGA-RD-A8NB-01 16 75663371 75663371 G A KARS Missense_Mutation p.A526V 0.05 deleterious(0) possibly_damaging(0.891) TCGA-RD-A8NB-01 16 87902794 87902794 C T SLC7A5 Missense_Mutation p.A79T 0.11 tolerated(0.78) benign(0.078) TCGA-RD-A8NB-01 16 88873829 88873829 G A CDT1 Silent p.A472A 0.16 TCGA-RD-A8NB-01 16 89761379 89761379 G A CDK10 Missense_Mutation p.R278Q 0.14 tolerated(0.45) benign(0.104) TCGA-RD-A8NB-01 17 11840737 11840737 C T DNAH9 Silent p.G4186G 0.17 TCGA-RD-A8NB-01 17 12909100 12909100 G A ELAC2 Silent p.D280D 0.15 TCGA-RD-A8NB-01 17 16456300 16456300 G A ZNF287 Missense_Mutation p.H386Y 0.17 deleterious(0) probably_damaging(0.939) TCGA-RD-A8NB-01 17 26817609 26817609 G A SLC13A2 Splice_Site p.X172_splice 0.18 TCGA-RD-A8NB-01 17 27011920 27011920 C T SUPT6H Nonsense_Mutation p.R810* 0.10 TCGA-RD-A8NB-01 17 27187577 27187577 C T ERAL1 3'UTR 0.17 TCGA-RD-A8NB-01 17 3595010 3595010 G A P2RX5 Silent p.G72G 0.11 TCGA-RD-A8NB-01 17 40369411 40369411 G A STAT5B Missense_Mutation p.A414V 0.17 tolerated(1) benign(0.019) TCGA-RD-A8NB-01 17 41570294 41570294 G A DHX8 Missense_Mutation p.R250Q 0.09 tolerated(0.22) benign(0.079) TCGA-RD-A8NB-01 17 46153476 46153476 G A CBX1 Nonsense_Mutation p.Q69* 0.24 TCGA-RD-A8NB-01 17 48271798 48271798 C T COL1A1 Missense_Mutation p.G509D 0.09 unknown(0) TCGA-RD-A8NB-01 17 5086715 5086715 A G ZNF594 Silent p.S279S 0.08 TCGA-RD-A8NB-01 17 55183612 55183612 G A AKAP1 Missense_Mutation p.V263I 0.12 tolerated(0.24) benign(0.004) TCGA-RD-A8NB-01 17 56052130 56052130 T C VEZF1 Missense_Mutation p.M424V 0.14 deleterious_low_confidence(0.03) benign(0) TCGA-RD-A8NB-01 17 57918652 57918652 T G VMP1 3'Flank 0.12 TCGA-RD-A8NB-01 17 59946439 59946439 C T INTS2 Missense_Mutation p.S1075N 0.14 tolerated(0.29) possibly_damaging(0.557) TCGA-RD-A8NB-01 17 650873 650873 C T GEMIN4 Missense_Mutation p.C137Y 0.16 tolerated(0.95) possibly_damaging(0.576) TCGA-RD-A8NB-01 17 66920955 66920955 A G ABCA8 Silent p.S443S 0.07 TCGA-RD-A8NB-01 17 7366233 7366233 G A ZBTB4 Missense_Mutation p.P690S 0.09 benign(0.175) TCGA-RD-A8NB-01 17 73887248 73887248 C T TRIM65 Missense_Mutation p.R389H 0.08 tolerated(0.36) benign(0.025) TCGA-RD-A8NB-01 17 74714868 74714868 G A JMJD6 Silent p.N385N 0.08 TCGA-RD-A8NB-01 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.15 TCGA-RD-A8NB-01 17 76137250 76137250 A G TMC8 3'UTR 0.70 TCGA-RD-A8NB-01 17 76818073 76818073 T A USP36 Missense_Mutation p.T235S 0.11 tolerated(0.17) possibly_damaging(0.832) TCGA-RD-A8NB-01 17 7750479 7750479 G A KDM6B Silent p.A322A 0.13 TCGA-RD-A8NB-01 17 78079611 78079611 G A GAA Missense_Mutation p.A204T 0.24 tolerated(0.12) benign(0.005) TCGA-RD-A8NB-01 17 79477841 79477841 G A ACTG1 Missense_Mutation p.R335C 0.14 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-RD-A8NB-01 17 8358157 8358157 T C NDEL1 Silent p.A248A 0.10 TCGA-RD-A8NB-01 17 8526298 8526298 A G MYH10 Silent p.D89D 0.11 TCGA-RD-A8NB-01 17 900550 900550 T C TIMM22 Silent p.S56S 0.21 TCGA-RD-A8NB-01 18 13746253 13746253 A - RNMT Frame_Shift_Del p.T394Hfs*19 0.16 TCGA-RD-A8NB-01 18 22806441 22806441 A C ZNF521 Missense_Mutation p.F481V 0.14 deleterious(0.01) possibly_damaging(0.767) TCGA-RD-A8NB-01 18 28651805 28651805 T C DSC2 Missense_Mutation p.T631A 0.19 tolerated(0.05) probably_damaging(0.998) TCGA-RD-A8NB-01 18 29797080 29797080 G T MEP1B Missense_Mutation p.R629M 0.13 deleterious(0) probably_damaging(0.954) TCGA-RD-A8NB-01 18 42531415 42531415 G A SETBP1 Missense_Mutation p.A704T 0.15 tolerated(1) benign(0.002) TCGA-RD-A8NB-01 18 43671784 43671784 C T ATP5A1 Missense_Mutation p.R58H 0.13 deleterious_low_confidence(0) benign(0.004) TCGA-RD-A8NB-01 18 56816841 56816841 G A SEC11C Missense_Mutation p.V62M 0.12 deleterious(0) probably_damaging(0.985) TCGA-RD-A8NB-01 18 57016366 57016366 C T LMAN1 Missense_Mutation p.A248T 0.09 deleterious(0) probably_damaging(1) TCGA-RD-A8NB-01 18 59483306 59483306 T C RNF152 Missense_Mutation p.T131A 0.15 tolerated(0.96) benign(0) TCGA-RD-A8NB-01 18 77473109 77473109 G A CTDP1 Missense_Mutation p.G334E 0.12 deleterious(0) probably_damaging(0.99) TCGA-RD-A8NB-01 18 77895756 77895756 T C ADNP2 Silent p.F820F 0.13 TCGA-RD-A8NB-01 19 11687084 11687084 G T ACP5 Missense_Mutation p.L237M 0.15 tolerated(0.14) probably_damaging(0.981) TCGA-RD-A8NB-01 19 11942519 11942519 A G ZNF440 Silent p.V176V 0.11 TCGA-RD-A8NB-01 19 11943226 11943226 G A ZNF440 Missense_Mutation p.R412Q 0.11 tolerated(0.61) benign(0.059) TCGA-RD-A8NB-01 19 12126128 12126128 C T ZNF433 Silent p.S518S 0.10 TCGA-RD-A8NB-01 19 12575907 12575907 C T ZNF709 Missense_Mutation p.E277K 0.12 deleterious(0.04) probably_damaging(0.987) TCGA-RD-A8NB-01 19 12805498 12805498 G A FBXW9 Silent p.N196N 0.11 TCGA-RD-A8NB-01 19 13366020 13366020 C T CACNA1A Silent p.P1548P 0.12 TCGA-RD-A8NB-01 19 15366276 15366276 C T BRD4 Missense_Mutation p.G627S 0.15 possibly_damaging(0.862) TCGA-RD-A8NB-01 19 17038858 17038858 C T CPAMD8 Missense_Mutation p.A1158T 0.11 tolerated(0.26) benign(0.004) TCGA-RD-A8NB-01 19 17683397 17683397 A G COLGALT1 Missense_Mutation p.Q312R 0.14 tolerated(0.34) benign(0.014) TCGA-RD-A8NB-01 19 18726791 18726791 G A TMEM59L Missense_Mutation p.V139I 0.13 tolerated(0.18) benign(0.034) TCGA-RD-A8NB-01 19 19141785 19141785 G A SUGP2 Silent p.S32S 0.10 TCGA-RD-A8NB-01 19 19625877 19625877 G A TSSK6 Silent p.A120A 0.15 TCGA-RD-A8NB-01 19 19757019 19757019 G A ATP13A1 Silent p.P1081P 0.20 TCGA-RD-A8NB-01 19 20728717 20728718 - T ZNF737 Frame_Shift_Ins p.V98Sfs*7 0.09 TCGA-RD-A8NB-01 19 30193800 30193800 G - C19orf12 Frame_Shift_Del p.P93Lfs*26 0.09 TCGA-RD-A8NB-01 19 31768069 31768069 G A TSHZ3 Missense_Mutation p.A877V 0.07 tolerated(0.31) benign(0.001) TCGA-RD-A8NB-01 19 34710329 34710329 G A LSM14A Missense_Mutation p.R272H 0.12 deleterious(0.01) probably_damaging(0.987) TCGA-RD-A8NB-01 19 36831553 36831553 C T ZFP14 Missense_Mutation p.R392H 0.09 deleterious(0.01) benign(0.003) TCGA-RD-A8NB-01 19 37368755 37368755 T G ZNF345 Silent p.P341P 0.10 TCGA-RD-A8NB-01 19 40331122 40331122 C T FBL Missense_Mutation p.R72H 0.10 tolerated(0.11) benign(0.037) TCGA-RD-A8NB-01 19 40366105 40366105 G T FCGBP Missense_Mutation p.P4710H 0.21 probably_damaging(0.998) TCGA-RD-A8NB-01 19 41825484 41825484 G A CCDC97 Missense_Mutation p.E170K 0.06 tolerated(0.05) benign(0.196) TCGA-RD-A8NB-01 19 43979539 43979540 - C PHLDB3 3'UTR 0.15 TCGA-RD-A8NB-01 19 4454005 4454005 C T UBXN6 Missense_Mutation p.A57T 0.17 deleterious(0.05) probably_damaging(0.965) TCGA-RD-A8NB-01 19 44611396 44611396 G A ZNF224 Silent p.T361T 0.09 TCGA-RD-A8NB-01 19 44661065 44661065 G A ZNF234 Missense_Mutation p.R299H 0.08 tolerated(0.37) probably_damaging(0.938) TCGA-RD-A8NB-01 19 49107148 49107148 C T FAM83E Missense_Mutation p.R260H 0.08 tolerated(0.07) possibly_damaging(0.672) TCGA-RD-A8NB-01 19 49519822 49519822 G T LHB Silent p.A55A 0.08 TCGA-RD-A8NB-01 19 49671210 49671210 G A TRPM4 Missense_Mutation p.V102I 0.12 tolerated(0.68) benign(0.002) TCGA-RD-A8NB-01 19 49971731 49971731 G A ALDH16A1 Missense_Mutation p.V678M 0.13 deleterious(0.02) probably_damaging(0.995) TCGA-RD-A8NB-01 19 50156189 50156189 C G SCAF1 Missense_Mutation p.T848S 0.23 unknown(0) TCGA-RD-A8NB-01 19 50170357 50170357 C T BCL2L12 Silent p.A147A 0.15 TCGA-RD-A8NB-01 19 50334137 50334137 C T MED25 Missense_Mutation p.P365L 0.21 deleterious(0) benign(0.138) TCGA-RD-A8NB-01 19 51586050 51586050 C T KLK14 5'UTR 0.21 TCGA-RD-A8NB-01 19 52619975 52619975 G T ZNF616 Missense_Mutation p.L148M 0.14 deleterious(0.01) probably_damaging(0.996) TCGA-RD-A8NB-01 19 53056842 53056842 C T ZNF808 Missense_Mutation p.H225Y 0.05 deleterious(0.03) benign(0.001) TCGA-RD-A8NB-01 19 53209914 53209914 T - ZNF611 Frame_Shift_Del p.I132* 0.08 TCGA-RD-A8NB-01 19 55143577 55143577 G A LILRB1 Missense_Mutation p.V184M 0.14 tolerated(0.07) possibly_damaging(0.716) TCGA-RD-A8NB-01 19 55543656 55543656 A G GP6 Missense_Mutation p.L59P 0.10 deleterious_low_confidence(0) probably_damaging(1) TCGA-RD-A8NB-01 19 55602911 55602911 G A PPP1R12C Missense_Mutation p.R760C 0.20 deleterious(0) probably_damaging(0.993) TCGA-RD-A8NB-01 19 55994454 55994454 G A ZNF628 Missense_Mutation p.V632I 0.13 tolerated(0.09) possibly_damaging(0.467) TCGA-RD-A8NB-01 19 57175267 57175267 C T ZNF835 Missense_Mutation p.A434T 0.14 tolerated(0.85) benign(0) TCGA-RD-A8NB-01 19 58868333 58868333 G A ZNF497 Silent p.C223C 0.29 TCGA-RD-A8NB-01 19 6430124 6430124 T G SLC25A41 Missense_Mutation p.S138R 0.20 tolerated(0.3) possibly_damaging(0.879) TCGA-RD-A8NB-01 19 8152027 8152027 C T FBN3 Missense_Mutation p.G2230S 0.24 deleterious(0) probably_damaging(0.996) TCGA-RD-A8NB-01 19 8808533 8808533 T C ACTL9 Silent p.P173P 0.14 TCGA-RD-A8NB-01 1 102270254 102270254 C T OLFM3 Missense_Mutation p.R306Q 0.12 deleterious(0.02) probably_damaging(0.994) TCGA-RD-A8NB-01 1 10431223 10431223 C T KIF1B Missense_Mutation p.R1571W 0.07 deleterious(0.02) probably_damaging(0.995) TCGA-RD-A8NB-01 1 109325081 109325083 GAA - STXBP3 In_Frame_Del p.E285del 0.11 TCGA-RD-A8NB-01 1 109560141 109560141 T - WDR47 Frame_Shift_Del p.R81Gfs*7 0.13 TCGA-RD-A8NB-01 1 112524391 112524391 C T KCND3 Missense_Mutation p.E320K 0.17 deleterious(0) possibly_damaging(0.635) TCGA-RD-A8NB-01 1 113464694 113464694 G A SLC16A1 Silent p.G93G 0.23 TCGA-RD-A8NB-01 1 117491976 117491976 C T PTGFRN Missense_Mutation p.A332V 0.13 tolerated(0.93) probably_damaging(0.999) TCGA-RD-A8NB-01 1 117618804 117618804 C T TTF2 Silent p.S426S 0.16 TCGA-RD-A8NB-01 1 12389903 12389903 C T VPS13D Missense_Mutation p.R2739C 0.08 benign(0.231) TCGA-RD-A8NB-01 1 12884980 12884980 C A PRAMEF11 Missense_Mutation p.Q377H 0.11 tolerated(0.14) benign(0.218) TCGA-RD-A8NB-01 1 13330501 13330501 C T PRAMEF3 Missense_Mutation p.S262N 0.20 deleterious(0.01) benign(0.137) TCGA-RD-A8NB-01 1 149915983 149915983 A G OTUD7B Missense_Mutation p.Y769H 0.12 tolerated_low_confidence(0.52) benign(0.241) TCGA-RD-A8NB-01 1 151378278 151378278 C T POGZ Missense_Mutation p.R1078Q 0.12 tolerated(0.22) probably_damaging(0.997) TCGA-RD-A8NB-01 1 152082495 152082495 C A TCHH Missense_Mutation p.E1066D 0.11 unknown(0) TCGA-RD-A8NB-01 1 152284306 152284306 G A FLG Missense_Mutation p.A1019V 0.14 benign(0.127) TCGA-RD-A8NB-01 1 152284584 152284584 T C FLG Silent p.S926S 0.11 TCGA-RD-A8NB-01 1 152324629 152324629 G T FLG2 Missense_Mutation p.S1878Y 0.13 probably_damaging(0.994) TCGA-RD-A8NB-01 1 152748946 152748946 T C LCE1F Silent p.C33C 0.12 TCGA-RD-A8NB-01 1 153512583 153512583 G T S100A5 Missense_Mutation p.L29M 0.06 deleterious(0) probably_damaging(0.986) TCGA-RD-A8NB-01 1 154293689 154293689 C T AQP10 Silent p.L20L 0.17 TCGA-RD-A8NB-01 1 154744703 154744703 G A KCNN3 Missense_Mutation p.A399V 0.16 tolerated(0.14) benign(0.374) TCGA-RD-A8NB-01 1 155175030 155175030 T C THBS3 Missense_Mutation p.T122A 0.15 tolerated(0.78) benign(0.002) TCGA-RD-A8NB-01 1 155296591 155296591 C T RUSC1 Silent p.A694A 0.13 TCGA-RD-A8NB-01 1 155450702 155450703 - T ASH1L Frame_Shift_Ins p.P654Afs*6 0.12 TCGA-RD-A8NB-01 1 158390266 158390266 G A OR10K2 Missense_Mutation p.R131C 0.15 deleterious(0.02) benign(0.009) TCGA-RD-A8NB-01 1 161039462 161039462 C A ARHGAP30 5'UTR 0.19 TCGA-RD-A8NB-01 1 161199541 161199541 T C NR1I3 3'UTR 0.12 TCGA-RD-A8NB-01 1 16355742 16355742 A G CLCNKA Missense_Mutation p.Y392C 0.07 tolerated(0.19) benign(0.005) TCGA-RD-A8NB-01 1 16377497 16377497 C T CLCNKB Missense_Mutation p.P394L 0.10 deleterious(0) probably_damaging(0.957) TCGA-RD-A8NB-01 1 167971723 167971723 C T DCAF6 Nonsense_Mutation p.R303* 0.12 TCGA-RD-A8NB-01 1 169512110 169512110 G A F5 Nonsense_Mutation p.R740* 0.09 TCGA-RD-A8NB-01 1 169701951 169701951 T A SELE Nonsense_Mutation p.K76* 0.11 TCGA-RD-A8NB-01 1 180910411 180910411 C A KIAA1614 Missense_Mutation p.S1050Y 0.19 deleterious(0) possibly_damaging(0.879) TCGA-RD-A8NB-01 1 183387409 183387409 G T NMNAT2 5'UTR 0.19 TCGA-RD-A8NB-01 1 186034407 186034407 G A HMCN1 Silent p.G2517G 0.16 TCGA-RD-A8NB-01 1 193219811 193219811 T C CDC73 Missense_Mutation p.M522T 0.16 deleterious(0.01) possibly_damaging(0.561) TCGA-RD-A8NB-01 1 19489039 19489039 T C UBR4 Missense_Mutation p.S1611G 0.15 benign(0.101) TCGA-RD-A8NB-01 1 1961598 1961598 G - GABRD Frame_Shift_Del p.G414Afs*95 0.15 TCGA-RD-A8NB-01 1 196876559 196876559 T G CFHR4 Missense_Mutation p.Y243D 0.12 deleterious(0) probably_damaging(0.972) TCGA-RD-A8NB-01 1 196952079 196952079 T C CFHR5 Silent p.P41P 0.08 TCGA-RD-A8NB-01 1 198222297 198222298 - A NEK7 Frame_Shift_Ins p.V65Sfs*5 0.11 TCGA-RD-A8NB-01 1 200880697 200880697 C T C1orf106 Missense_Mutation p.P359L 0.16 tolerated(0.11) benign(0.01) TCGA-RD-A8NB-01 1 201039491 201039491 G A CACNA1S Nonsense_Mutation p.R757* 0.10 TCGA-RD-A8NB-01 1 204588369 204588369 C T LRRN2 Missense_Mutation p.R251Q 0.12 tolerated(0.3) benign(0.007) TCGA-RD-A8NB-01 1 213032289 213032289 C A FLVCR1 Silent p.T165T 0.07 TCGA-RD-A8NB-01 1 21797128 21797128 A G NBPF3 Missense_Mutation p.Y116C 0.15 tolerated(0.27) benign(0) TCGA-RD-A8NB-01 1 223991931 223991931 T - TP53BP2 Frame_Shift_Del p.V199* 0.14 TCGA-RD-A8NB-01 1 228362690 228362690 C T IBA57 Silent p.L213L 0.32 TCGA-RD-A8NB-01 1 232943677 232943677 G T MAP10 Missense_Mutation p.D970Y 0.13 deleterious(0.01) probably_damaging(0.935) TCGA-RD-A8NB-01 1 234561458 234561458 C G TARBP1 Missense_Mutation p.K1135N 0.10 deleterious(0) probably_damaging(0.999) TCGA-RD-A8NB-01 1 235336054 235336054 G A ARID4B Silent p.A1230A 0.19 TCGA-RD-A8NB-01 1 235973281 235973281 A G LYST Silent p.S279S 0.10 TCGA-RD-A8NB-01 1 23845622 23845622 C T E2F2 Silent p.R246R 0.08 TCGA-RD-A8NB-01 1 240370479 240370479 G A FMN2 Silent p.V789V 0.07 TCGA-RD-A8NB-01 1 243727122 243727122 C A AKT3 Missense_Mutation p.G283V 0.18 deleterious(0.01) probably_damaging(0.942) TCGA-RD-A8NB-01 1 26135608 26135608 C T SEPN1 Missense_Mutation p.A280V 0.06 tolerated(0.06) benign(0.139) TCGA-RD-A8NB-01 1 27618780 27618780 T C WDTC1 Missense_Mutation p.V185A 0.08 tolerated(1) benign(0.006) TCGA-RD-A8NB-01 1 28208555 28208555 C T THEMIS2 Silent p.H240H 0.18 TCGA-RD-A8NB-01 1 33252642 33252644 TCC - YARS In_Frame_Del p.E239del 0.15 TCGA-RD-A8NB-01 1 3335248 3335249 - C PRDM16 Frame_Shift_Ins p.R962Qfs*21 0.13 TCGA-RD-A8NB-01 1 33354598 33354598 C T HPCA Silent p.G33G 0.19 TCGA-RD-A8NB-01 1 35579716 35579716 A G ZMYM1 Missense_Mutation p.K762R 0.14 deleterious(0.01) possibly_damaging(0.713) TCGA-RD-A8NB-01 1 3755576 3755576 G A CEP104 Silent p.A281A 0.06 TCGA-RD-A8NB-01 1 3761548 3761548 C A CEP104 Splice_Site p.X164_splice 0.12 TCGA-RD-A8NB-01 1 42045465 42045465 C T HIVEP3 Silent p.P1668P 0.13 TCGA-RD-A8NB-01 1 55224626 55224626 C T PARS2 Missense_Mutation p.S70N 0.18 deleterious(0) possibly_damaging(0.788) TCGA-RD-A8NB-01 1 57209867 57209867 G A C1orf168 Missense_Mutation p.S487L 0.16 tolerated(0.1) benign(0.048) TCGA-RD-A8NB-01 1 57528618 57528618 T C DAB1 Splice_Site p.X222_splice 0.17 TCGA-RD-A8NB-01 1 6399635 6399635 G T ACOT7 Silent p.A102A 0.23 TCGA-RD-A8NB-01 1 65858124 65858124 G A DNAJC6 Silent p.S493S 0.21 TCGA-RD-A8NB-01 1 70710393 70710393 G A SRSF11 Missense_Mutation p.R276Q 0.09 deleterious(0.04) unknown(0) TCGA-RD-A8NB-01 1 75009730 75009730 G A TNNI3K 3'UTR 0.23 TCGA-RD-A8NB-01 1 75065551 75065551 C A C1orf173 Missense_Mutation p.Q518H 0.09 deleterious(0) probably_damaging(0.922) TCGA-RD-A8NB-01 1 8420670 8420670 G - RERE Frame_Shift_Del p.P966Lfs*4 0.11 TCGA-RD-A8NB-01 1 97548005 97548005 G A DPYD Nonsense_Mutation p.Q930* 0.15 TCGA-RD-A8NB-01 1 9801234 9801234 G A CLSTN1 Silent p.H479H 0.19 TCGA-RD-A8NB-01 20 16316590 16316590 A G KIF16B Missense_Mutation p.L416S 0.07 deleterious(0) possibly_damaging(0.908) TCGA-RD-A8NB-01 20 17585240 17585240 G A DSTN Missense_Mutation p.A118T 0.08 deleterious(0.03) benign(0.425) TCGA-RD-A8NB-01 20 19701788 19701788 G A SLC24A3 3'UTR 0.13 TCGA-RD-A8NB-01 20 2778920 2778920 G A CPXM1 Silent p.G156G 0.23 TCGA-RD-A8NB-01 20 29960757 29960757 A G DEFB118 Silent p.R52R 0.18 TCGA-RD-A8NB-01 20 30530752 30530752 C T TTLL9 Silent p.C416C 0.11 TCGA-RD-A8NB-01 20 30745638 30745638 C T TM9SF4 Silent p.F457F 0.09 TCGA-RD-A8NB-01 20 31690805 31690805 C T BPIFB4 Silent p.N555N 0.10 TCGA-RD-A8NB-01 20 33519777 33519777 G A GSS Missense_Mutation p.R332C 0.07 deleterious(0.02) probably_damaging(0.996) TCGA-RD-A8NB-01 20 3542981 3542981 C T ATRN Silent p.G502G 0.09 TCGA-RD-A8NB-01 20 3672097 3672097 G T SIGLEC1 Missense_Mutation p.P1494H 0.14 deleterious(0) probably_damaging(0.964) TCGA-RD-A8NB-01 20 3675418 3675418 G A SIGLEC1 Missense_Mutation p.R946C 0.11 tolerated(0.1) benign(0.082) TCGA-RD-A8NB-01 20 398392 398392 G A RBCK1 Missense_Mutation p.G93D 0.18 tolerated(0.09) possibly_damaging(0.533) TCGA-RD-A8NB-01 20 40118539 40118539 G A CHD6 Missense_Mutation p.T520I 0.06 deleterious(0) probably_damaging(0.999) TCGA-RD-A8NB-01 20 4162872 4162872 G A SMOX Missense_Mutation p.G249D 0.14 tolerated(0.4) benign(0.015) TCGA-RD-A8NB-01 20 43550364 43550364 C T PABPC1L Missense_Mutation p.R290C 0.11 deleterious(0) possibly_damaging(0.88) TCGA-RD-A8NB-01 20 45910948 45910948 G A ZMYND8 Missense_Mutation p.P299L 0.09 tolerated(0.25) benign(0.059) TCGA-RD-A8NB-01 20 47570145 47570145 C A ARFGEF2 Missense_Mutation p.P219H 0.09 deleterious(0.05) probably_damaging(0.999) TCGA-RD-A8NB-01 20 4771186 4771186 G A RASSF2 Missense_Mutation p.R150C 0.15 tolerated(0.15) possibly_damaging(0.724) TCGA-RD-A8NB-01 20 50346511 50346511 G A ATP9A Silent p.C25C 0.13 TCGA-RD-A8NB-01 20 57896168 57896168 G A EDN3 Silent p.R154R 0.11 TCGA-RD-A8NB-01 20 60704975 60704975 C T LSM14B Missense_Mutation p.R188C 0.20 deleterious(0.01) probably_damaging(0.915) TCGA-RD-A8NB-01 20 60838714 60838714 C T OSBPL2 Silent p.S75S 0.14 TCGA-RD-A8NB-01 20 61511358 61511358 G A DIDO1 Missense_Mutation p.P1984S 0.14 benign(0.015) TCGA-RD-A8NB-01 20 61869952 61869952 C A BIRC7 Missense_Mutation p.P188H 0.08 deleterious(0.01) possibly_damaging(0.525) TCGA-RD-A8NB-01 20 62221634 62221634 C T GMEB2 Silent p.T467T 0.16 TCGA-RD-A8NB-01 20 7894856 7894856 C T HAO1 Missense_Mutation p.R167H 0.09 deleterious(0) probably_damaging(1) TCGA-RD-A8NB-01 21 10970054 10970054 G C TPTE Missense_Mutation p.T25R 0.06 tolerated_low_confidence(0.14) benign(0.183) TCGA-RD-A8NB-01 21 34635591 34635591 C T IFNAR2 Missense_Mutation p.A445V 0.09 tolerated(0.83) benign(0.188) TCGA-RD-A8NB-01 21 34969670 34969670 T - CRYZL1 Frame_Shift_Del p.K238Nfs*22 0.10 TCGA-RD-A8NB-01 21 37420668 37420668 A G SETD4 Silent p.P78P 0.07 TCGA-RD-A8NB-01 21 39672394 39672394 C T KCNJ15 3'UTR 0.44 TCGA-RD-A8NB-01 21 41033123 41033123 T C B3GALT5 Missense_Mutation p.F213L 0.13 deleterious(0) probably_damaging(0.984) TCGA-RD-A8NB-01 21 41137619 41137619 C A IGSF5 Silent p.P86P 0.10 TCGA-RD-A8NB-01 21 42808992 42808992 G A MX1 Missense_Mutation p.E117K 0.11 tolerated(0.51) benign(0.005) TCGA-RD-A8NB-01 21 43160994 43160994 C G RIPK4 3'UTR 0.24 TCGA-RD-A8NB-01 21 44270219 44270219 C T WDR4 Silent p.P393P 0.13 TCGA-RD-A8NB-01 21 46309937 46309937 G A ITGB2 Missense_Mutation p.T538I 0.15 deleterious(0) benign(0.437) TCGA-RD-A8NB-01 21 47852115 47852115 G T PCNT Missense_Mutation p.D2913Y 0.20 probably_damaging(0.953) TCGA-RD-A8NB-01 22 19865951 19865951 C T TXNRD2 Missense_Mutation p.A429T 0.14 tolerated(0.5) possibly_damaging(0.804) TCGA-RD-A8NB-01 22 23101618 23101618 C T IGLV2-14 Missense_Mutation p.T91M 0.25 tolerated_low_confidence(0.06) benign(0.282) TCGA-RD-A8NB-01 22 23980802 23980802 G A GUSBP11 RNA 0.30 TCGA-RD-A8NB-01 22 24836898 24836898 A T ADORA2A Missense_Mutation p.K227M 0.06 deleterious(0) possibly_damaging(0.477) TCGA-RD-A8NB-01 22 36206021 36206021 C T RBFOX2 Missense_Mutation p.A90T 0.12 benign(0.004) TCGA-RD-A8NB-01 22 36894061 36894061 C A FOXRED2 Silent p.L453L 0.36 TCGA-RD-A8NB-01 22 38119562 38119562 A G TRIOBP Silent p.S333S 0.09 TCGA-RD-A8NB-01 22 45601189 45601189 G A KIAA0930 Missense_Mutation p.A147V 0.23 deleterious(0.01) probably_damaging(0.985) TCGA-RD-A8NB-01 22 46658277 46658277 T C PKDREJ Missense_Mutation p.N315D 0.12 tolerated(1) benign(0.002) TCGA-RD-A8NB-01 22 50616018 50616018 G A PANX2 Missense_Mutation p.V293M 0.12 deleterious(0) probably_damaging(0.998) TCGA-RD-A8NB-01 2 100040667 100040667 G A REV1 Silent p.Y541Y 0.08 TCGA-RD-A8NB-01 2 100065831 100065832 - C REV1 Frame_Shift_Ins p.E106Gfs*40 0.10 TCGA-RD-A8NB-01 2 105472907 105472907 C T POU3F3 Silent p.D313D 0.14 TCGA-RD-A8NB-01 2 114035987 114035987 C T PAX8 5'UTR 0.15 TCGA-RD-A8NB-01 2 125262020 125262020 T G CNTNAP5 Missense_Mutation p.L404R 0.10 deleterious(0.01) probably_damaging(1) TCGA-RD-A8NB-01 2 136562354 136562354 C T LCT Missense_Mutation p.A1483T 0.11 deleterious(0.03) possibly_damaging(0.783) TCGA-RD-A8NB-01 2 148683686 148683686 A - ACVR2A Frame_Shift_Del p.K437Rfs*5 0.23 TCGA-RD-A8NB-01 2 152320048 152320048 G A RIF1 Silent p.V1338V 0.17 TCGA-RD-A8NB-01 2 155555493 155555493 C T KCNJ3 Missense_Mutation p.S69L 0.07 deleterious(0.01) possibly_damaging(0.653) TCGA-RD-A8NB-01 2 165768259 165768259 C T SLC38A11 Splice_Site p.X228_splice 0.21 TCGA-RD-A8NB-01 2 167145147 167145147 G A SCN9A Missense_Mutation p.R372C 0.11 deleterious(0) probably_damaging(1) TCGA-RD-A8NB-01 2 167760402 167760402 T C XIRP2 Splice_Site p.X136_splice 0.19 TCGA-RD-A8NB-01 2 168105670 168105671 - A XIRP2 Frame_Shift_Ins p.T2592Nfs*3 0.13 TCGA-RD-A8NB-01 2 168106866 168106866 A G XIRP2 Missense_Mutation p.I2988M 0.12 benign(0.2) TCGA-RD-A8NB-01 2 170042249 170042249 A - LRP2 Frame_Shift_Del p.F3203Lfs*7 0.09 TCGA-RD-A8NB-01 2 174228081 174228081 G A CDCA7 Missense_Mutation p.R171H 0.12 tolerated(0.09) benign(0.397) TCGA-RD-A8NB-01 2 175213585 175213585 T C CIR1 Silent p.K331K 0.12 TCGA-RD-A8NB-01 2 178482781 178482781 G A TTC30A Missense_Mutation p.R217C 0.10 deleterious(0.01) probably_damaging(0.929) TCGA-RD-A8NB-01 2 179355493 179355493 G T PLEKHA3 Missense_Mutation p.G89W 0.18 deleterious(0) probably_damaging(0.999) TCGA-RD-A8NB-01 2 179569314 179569314 T - TTN Frame_Shift_Del p.N9962Tfs*23 0.10 TCGA-RD-A8NB-01 2 179616715 179616715 G T TTN Intron 0.10 TCGA-RD-A8NB-01 2 186672661 186672662 - A FSIP2 Frame_Shift_Ins p.I6301Nfs*17 0.09 TCGA-RD-A8NB-01 2 187713876 187713876 C T ZSWIM2 5'UTR 0.25 TCGA-RD-A8NB-01 2 190593008 190593008 G A ANKAR Missense_Mutation p.V965I 0.10 tolerated(0.06) benign(0.021) TCGA-RD-A8NB-01 2 1906998 1906998 G A MYT1L Missense_Mutation p.T627M 0.19 deleterious(0) probably_damaging(0.963) TCGA-RD-A8NB-01 2 197664345 197664348 GTCT - GTF3C3 5'UTR 0.14 TCGA-RD-A8NB-01 2 202252597 202252597 G A TRAK2 Missense_Mutation p.R509W 0.07 deleterious(0) possibly_damaging(0.516) TCGA-RD-A8NB-01 2 202545626 202545626 C A MPP4 Missense_Mutation p.Q288H 0.29 deleterious(0) probably_damaging(0.999) TCGA-RD-A8NB-01 2 204074022 204074022 A G NBEAL1 Missense_Mutation p.T2559A 0.06 tolerated(1) benign(0.017) TCGA-RD-A8NB-01 2 211441116 211441116 A G CPS1 Missense_Mutation p.T101A 0.14 deleterious(0.04) probably_damaging(0.998) TCGA-RD-A8NB-01 2 214215270 214215270 A G SPAG16 Silent p.A221A 0.08 TCGA-RD-A8NB-01 2 220107933 220107933 G A GLB1L Missense_Mutation p.P59L 0.19 tolerated(0.05) probably_damaging(1) TCGA-RD-A8NB-01 2 234344976 234344976 C T DGKD Silent p.H236H 0.13 TCGA-RD-A8NB-01 2 234652493 234652493 G A UGT1A10 Intron 0.14 TCGA-RD-A8NB-01 2 234676504 234676504 C T UGT1A10 Missense_Mutation p.R333W 0.14 deleterious(0) probably_damaging(1) TCGA-RD-A8NB-01 2 238722261 238722261 C A RBM44 Silent p.A4A 0.14 TCGA-RD-A8NB-01 2 241679744 241679744 G A KIF1A Missense_Mutation p.P1263S 0.15 tolerated(0.07) probably_damaging(0.999) TCGA-RD-A8NB-01 2 241683428 241683428 G T KIF1A Missense_Mutation p.P1172H 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-RD-A8NB-01 2 26435460 26435460 G A HADHA Silent p.A318A 0.16 TCGA-RD-A8NB-01 2 264930 264930 C A ACP1 5'UTR 0.12 TCGA-RD-A8NB-01 2 28631654 28631654 G A FOSL2 Missense_Mutation p.R128H 0.16 deleterious(0) probably_damaging(0.999) TCGA-RD-A8NB-01 2 32689838 32689838 C - BIRC6 Frame_Shift_Del p.P1736Qfs*17 0.15 TCGA-RD-A8NB-01 2 33614351 33614351 C T LTBP1 Silent p.A1604A 0.17 TCGA-RD-A8NB-01 2 37376193 37376193 A - EIF2AK2 Intron 0.17 TCGA-RD-A8NB-01 2 37406667 37406667 C T SULT6B1 Missense_Mutation p.D117N 0.09 tolerated(1) benign(0.002) TCGA-RD-A8NB-01 2 39025438 39025438 T C DHX57 3'UTR 0.23 TCGA-RD-A8NB-01 2 43015746 43015746 G A HAAO Missense_Mutation p.H28Y 0.23 tolerated(0.06) possibly_damaging(0.508) TCGA-RD-A8NB-01 2 48040370 48040370 T C FBXO11 Intron 0.09 TCGA-RD-A8NB-01 2 61180224 61180224 C A PUS10 Missense_Mutation p.G406C 0.07 deleterious(0) probably_damaging(1) TCGA-RD-A8NB-01 2 64779844 64779844 A - AFTPH Frame_Shift_Del p.N414Mfs*9 0.09 TCGA-RD-A8NB-01 2 65467030 65467030 C A ACTR2 Silent p.I31I 0.08 TCGA-RD-A8NB-01 2 72360268 72360268 G A CYP26B1 Missense_Mutation p.R344C 0.12 deleterious(0.02) possibly_damaging(0.773) TCGA-RD-A8NB-01 2 74689883 74689883 C T MOGS Missense_Mutation p.G345R 0.11 tolerated(0.55) benign(0.002) TCGA-RD-A8NB-01 2 74741942 74741942 G A TLX2 Silent p.P3P 0.19 TCGA-RD-A8NB-01 2 74743235 74743235 G A TLX2 Silent p.S258S 0.19 TCGA-RD-A8NB-01 2 85780073 85780073 G T GGCX Missense_Mutation p.L426I 0.06 tolerated(0.1) probably_damaging(0.923) TCGA-RD-A8NB-01 2 86362015 86362015 C T PTCD3 Silent p.S561S 0.10 TCGA-RD-A8NB-01 2 86386733 86386733 C T IMMT Missense_Mutation p.A320T 0.16 tolerated(0.14) benign(0.019) TCGA-RD-A8NB-01 2 86733066 86733066 A G CHMP3 Missense_Mutation p.L206S 0.19 deleterious(0.01) possibly_damaging(0.705) TCGA-RD-A8NB-01 2 87016543 87016543 C - CD8A Frame_Shift_Del p.L177Wfs*115 0.17 TCGA-RD-A8NB-01 2 96798404 96798404 G A ASTL Missense_Mutation p.T171M 0.06 tolerated(0.24) possibly_damaging(0.553) TCGA-RD-A8NB-01 2 99006190 99006190 C T CNGA3 Silent p.T173T 0.14 TCGA-RD-A8NB-01 3 108324274 108324275 - T DZIP3 Frame_Shift_Ins p.V10Cfs*15 0.11 TCGA-RD-A8NB-01 3 10953837 10953837 C T SLC6A11 Silent p.T318T 0.07 TCGA-RD-A8NB-01 3 111997686 111997686 C T SLC9C1 Missense_Mutation p.A70T 0.14 tolerated(0.4) benign(0.14) TCGA-RD-A8NB-01 3 114070441 114070441 C T ZBTB20 Missense_Mutation p.V162M 0.07 tolerated(0.09) probably_damaging(0.993) TCGA-RD-A8NB-01 3 127500712 127500712 G A MGLL Missense_Mutation p.A61V 0.18 tolerated(0.11) benign(0.055) TCGA-RD-A8NB-01 3 128976392 128976392 G A COPG1 Missense_Mutation p.R220Q 0.15 tolerated(0.11) benign(0.223) TCGA-RD-A8NB-01 3 131068523 131068523 A G NEK11 Missense_Mutation p.Q614R 0.11 tolerated(1) benign(0) TCGA-RD-A8NB-01 3 1320172 1320172 G A CNTN6 Missense_Mutation p.G145D 0.08 deleterious(0) probably_damaging(1) TCGA-RD-A8NB-01 3 134256035 134256035 C T CEP63 Silent p.R160R 0.21 TCGA-RD-A8NB-01 3 140406740 140406740 C T TRIM42 Nonsense_Mutation p.Q406* 0.10 TCGA-RD-A8NB-01 3 140675447 140675447 G A SLC25A36 Silent p.T40T 0.11 TCGA-RD-A8NB-01 3 147113838 147113838 G A ZIC4 Silent p.V213V 0.12 TCGA-RD-A8NB-01 3 147128073 147128073 G A ZIC1 Silent p.S58S 0.16 TCGA-RD-A8NB-01 3 14958761 14958761 C T FGD5 Silent p.N1137N 0.16 TCGA-RD-A8NB-01 3 150289745 150289746 - A EIF2A Frame_Shift_Ins p.N273Kfs*6 0.19 TCGA-RD-A8NB-01 3 151017921 151017921 C T GPR87 5'UTR 0.09 TCGA-RD-A8NB-01 3 15115371 15115371 C T ZFYVE20 Missense_Mutation p.R758H 0.17 deleterious_low_confidence(0) probably_damaging(1) TCGA-RD-A8NB-01 3 154042083 154042083 G A DHX36 Silent p.G41G 0.18 TCGA-RD-A8NB-01 3 15498034 15498034 G A COLQ Missense_Mutation p.A336V 0.13 tolerated(0.1) unknown(0) TCGA-RD-A8NB-01 3 155314139 155314139 G A PLCH1 Silent p.S24S 0.15 TCGA-RD-A8NB-01 3 170781735 170781735 G A TNIK Nonsense_Mutation p.R1340* 0.11 TCGA-RD-A8NB-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.16 tolerated(0.11) possibly_damaging(0.529) TCGA-RD-A8NB-01 3 180337729 180337729 C T CCDC39 Silent p.R676R 0.19 TCGA-RD-A8NB-01 3 183857916 183857916 T A EIF2B5 Missense_Mutation p.F272I 0.27 deleterious(0) possibly_damaging(0.78) TCGA-RD-A8NB-01 3 18390959 18390959 G A SATB1 Silent p.D697D 0.17 TCGA-RD-A8NB-01 3 193049055 193049055 C T ATP13A5 Missense_Mutation p.V440M 0.26 deleterious(0.03) possibly_damaging(0.882) TCGA-RD-A8NB-01 3 193361314 193361314 A G OPA1 Intron 0.16 TCGA-RD-A8NB-01 3 195605982 195605982 C - TNK2 Frame_Shift_Del p.V381* 0.12 TCGA-RD-A8NB-01 3 196198975 196198975 G A RNF168 Silent p.R477R 0.11 TCGA-RD-A8NB-01 3 28562586 28562586 G T ZCWPW2 Missense_Mutation p.E296D 0.28 tolerated(0.08) benign(0.025) TCGA-RD-A8NB-01 3 33450218 33450218 T G UBP1 Silent p.P297P 0.08 TCGA-RD-A8NB-01 3 38739683 38739683 G - SCN10A Frame_Shift_Del p.Y1677Tfs*21 0.09 TCGA-RD-A8NB-01 3 42907089 42907089 T C ACKR2 Silent p.L365L 0.12 TCGA-RD-A8NB-01 3 45942516 45942516 T C CCR9 Missense_Mutation p.V79A 0.05 tolerated(0.24) benign(0.065) TCGA-RD-A8NB-01 3 46008069 46008069 C A FYCO1 Missense_Mutation p.K919N 0.18 tolerated(0.15) probably_damaging(0.93) TCGA-RD-A8NB-01 3 46008467 46008467 G A FYCO1 Missense_Mutation p.R787W 0.12 deleterious(0) possibly_damaging(0.73) TCGA-RD-A8NB-01 3 49062588 49062588 G A IMPDH2 Missense_Mutation p.A374V 0.14 tolerated(1) benign(0.004) TCGA-RD-A8NB-01 3 50102551 50102551 C - RBM6 Frame_Shift_Del p.P893Lfs*6 0.13 TCGA-RD-A8NB-01 3 50379311 50379311 C T ZMYND10 Missense_Mutation p.A351T 0.16 deleterious(0.03) benign(0.358) TCGA-RD-A8NB-01 3 50614571 50614571 G A HEMK1 Missense_Mutation p.C168Y 0.09 deleterious(0) probably_damaging(0.998) TCGA-RD-A8NB-01 3 51696579 51696579 G T RAD54L2 Missense_Mutation p.A1183S 0.12 tolerated_low_confidence(0.1) benign(0.135) TCGA-RD-A8NB-01 3 51864627 51864627 C T IQCF3 Missense_Mutation p.A92V 0.17 deleterious(0) benign(0.266) TCGA-RD-A8NB-01 3 5246776 5246776 G A EDEM1 Missense_Mutation p.G356D 0.08 deleterious(0) probably_damaging(0.999) TCGA-RD-A8NB-01 3 52728892 52728892 C T GLT8D1 Missense_Mutation p.R362Q 0.08 deleterious(0) probably_damaging(0.961) TCGA-RD-A8NB-01 3 57283463 57283463 C A APPL1 Silent p.A313A 0.09 TCGA-RD-A8NB-01 3 71804029 71804029 A G GPR27 Missense_Mutation p.K277E 0.15 deleterious(0.01) probably_damaging(0.947) TCGA-RD-A8NB-01 3 73432561 73432561 G A PDZRN3 Silent p.D1052D 0.10 TCGA-RD-A8NB-01 3 78684969 78684969 C T ROBO1 Silent p.V1109V 0.07 TCGA-RD-A8NB-01 3 89391087 89391087 C T EPHA3 Nonsense_Mutation p.R385* 0.12 TCGA-RD-A8NB-01 3 97852478 97852478 T C OR5H1 Missense_Mutation p.Y313H 0.17 deleterious_low_confidence(0) possibly_damaging(0.462) TCGA-RD-A8NB-01 3 98518207 98518207 G A DCBLD2 3'UTR 0.18 TCGA-RD-A8NB-01 4 100349245 100349245 C T ADH7 Missense_Mutation p.D136N 0.18 tolerated(0.28) benign(0.046) TCGA-RD-A8NB-01 4 103832615 103832615 A - SLC9B1 Frame_Shift_Del p.F303Lfs*15 0.12 TCGA-RD-A8NB-01 4 10445650 10445650 G A ZNF518B Missense_Mutation p.T768M 0.11 deleterious(0) possibly_damaging(0.828) TCGA-RD-A8NB-01 4 111553634 111553634 C T PITX2 Missense_Mutation p.V17M 0.10 deleterious_low_confidence(0.04) benign(0.015) TCGA-RD-A8NB-01 4 124323011 124323011 T C SPRY1 Missense_Mutation p.Y89H 0.09 tolerated(0.46) benign(0.201) TCGA-RD-A8NB-01 4 128627966 128627966 C T INTU Missense_Mutation p.R705C 0.09 deleterious(0.04) benign(0.16) TCGA-RD-A8NB-01 4 155156879 155156879 A - DCHS2 Frame_Shift_Del p.F2520Lfs*2 0.13 TCGA-RD-A8NB-01 4 160273909 160273909 C A RAPGEF2 Missense_Mutation p.S1152Y 0.14 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-RD-A8NB-01 4 162307481 162307481 A G FSTL5 Silent p.Y654Y 0.07 TCGA-RD-A8NB-01 4 173232875 173232875 A G GALNTL6 Missense_Mutation p.R120G 0.09 deleterious(0) probably_damaging(1) TCGA-RD-A8NB-01 4 177650786 177650786 C A VEGFC Nonsense_Mutation p.G88* 0.13 TCGA-RD-A8NB-01 4 186180215 186180215 C T SNX25 Missense_Mutation p.A79V 0.19 tolerated(0.09) benign(0.005) TCGA-RD-A8NB-01 4 186545480 186545480 T - SORBS2 Frame_Shift_Del p.N464Tfs*25 0.11 TCGA-RD-A8NB-01 4 187153443 187153443 G T KLKB1 Missense_Mutation p.R74M 0.08 deleterious(0.02) probably_damaging(0.971) TCGA-RD-A8NB-01 4 2930188 2930190 AAG - ADD1 In_Frame_Del p.K752del 0.09 TCGA-RD-A8NB-01 4 3432547 3432547 G - RGS12 Frame_Shift_Del p.G1328Afs*13 0.14 TCGA-RD-A8NB-01 4 41621389 41621390 AG - LIMCH1 Frame_Shift_Del p.E292Gfs*29 0.21 TCGA-RD-A8NB-01 4 47559902 47559902 C - ATP10D Frame_Shift_Del p.Q684Sfs*22 0.16 TCGA-RD-A8NB-01 4 52777312 52777312 T C DCUN1D4 Missense_Mutation p.L231P 0.16 deleterious(0.01) probably_damaging(0.992) TCGA-RD-A8NB-01 4 55594204 55594204 C T KIT Missense_Mutation p.A636V 0.07 deleterious(0) probably_damaging(1) TCGA-RD-A8NB-01 4 6335446 6335446 G T PPP2R2C Missense_Mutation p.P268H 0.16 tolerated(0.16) possibly_damaging(0.813) TCGA-RD-A8NB-01 4 68534288 68534288 T A UBA6 Silent p.G258G 0.12 TCGA-RD-A8NB-01 4 69433554 69433554 A G UGT2B17 Missense_Mutation p.Y217H 0.16 tolerated(0.25) benign(0.007) TCGA-RD-A8NB-01 4 69682367 69682367 A - UGT2B10 Frame_Shift_Del p.N212Ifs*17 0.08 TCGA-RD-A8NB-01 4 71275429 71275429 T - PROL1 Frame_Shift_Del p.A132Lfs*13 0.08 TCGA-RD-A8NB-01 4 71467158 71467158 T C AMBN Silent p.H106H 0.12 TCGA-RD-A8NB-01 4 72316953 72316953 G A SLC4A4 Silent p.T419T 0.12 TCGA-RD-A8NB-01 4 76446972 76446972 A - THAP6 Frame_Shift_Del p.N107Tfs*38 0.14 TCGA-RD-A8NB-01 4 786363 786363 C - CPLX1 Frame_Shift_Del p.G22Vfs*73 0.16 TCGA-RD-A8NB-01 4 79343109 79343109 C T FRAS1 Missense_Mutation p.P1545S 0.11 benign(0.002) TCGA-RD-A8NB-01 4 84391358 84391358 T - FAM175A Frame_Shift_Del p.G159Dfs*8 0.14 TCGA-RD-A8NB-01 4 86696 86696 C T Z95704.2 RNA 0.13 TCGA-RD-A8NB-01 4 99338552 99338552 A G RAP1GDS1 Silent p.K315K 0.19 TCGA-RD-A8NB-01 5 114861081 114861081 T - FEM1C Frame_Shift_Del p.R260Efs*7 0.13 TCGA-RD-A8NB-01 5 127674704 127674704 G A FBN2 Silent p.C1131C 0.08 TCGA-RD-A8NB-01 5 132097298 132097298 C T SEPT8 Missense_Mutation p.D272N 0.18 deleterious(0.01) probably_damaging(1) TCGA-RD-A8NB-01 5 137534426 137534427 - A CDC23 Frame_Shift_Ins p.L234Sfs*23 0.12 TCGA-RD-A8NB-01 5 138760792 138760792 T C DNAJC18 Missense_Mutation p.M191V 0.09 tolerated(1) benign(0.008) TCGA-RD-A8NB-01 5 139743751 139743751 G A SLC4A9 Missense_Mutation p.R480H 0.15 deleterious(0.03) benign(0.262) TCGA-RD-A8NB-01 5 140203331 140203331 G A PCDHA5 Silent p.P657P 0.20 TCGA-RD-A8NB-01 5 140215255 140215255 C T PCDHA7 Silent p.D429D 0.08 TCGA-RD-A8NB-01 5 140221009 140221009 G A PCDHA8 Missense_Mutation p.V35I 0.15 tolerated_low_confidence(0.14) benign(0.147) TCGA-RD-A8NB-01 5 140222535 140222535 G A PCDHA8 Silent p.P543P 0.12 TCGA-RD-A8NB-01 5 140257171 140257171 G A PCDHA12 Missense_Mutation p.C705Y 0.07 deleterious_low_confidence(0.02) possibly_damaging(0.721) TCGA-RD-A8NB-01 5 140502529 140502529 G T PCDHB4 Nonsense_Mutation p.E317* 0.09 TCGA-RD-A8NB-01 5 140580609 140580609 T C PCDHB11 Missense_Mutation p.I421T 0.08 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-RD-A8NB-01 5 140764553 140764553 C T PCDHGA7 Missense_Mutation p.A696V 0.16 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-RD-A8NB-01 5 140908340 140908340 C T DIAPH1 Missense_Mutation p.V983I 0.15 possibly_damaging(0.456) TCGA-RD-A8NB-01 5 141005780 141005780 G A HDAC3 Nonsense_Mutation p.R301* 0.16 TCGA-RD-A8NB-01 5 141049371 141049371 A G ARAP3 Missense_Mutation p.F753L 0.12 deleterious(0.02) possibly_damaging(0.867) TCGA-RD-A8NB-01 5 142661552 142661552 T C NR3C1 Missense_Mutation p.S747G 0.10 deleterious(0) benign(0.319) TCGA-RD-A8NB-01 5 148392202 148392202 G A SH3TC2 Missense_Mutation p.A1050V 0.27 tolerated(0.32) possibly_damaging(0.762) TCGA-RD-A8NB-01 5 148407855 148407855 A G SH3TC2 Silent p.A480A 0.11 TCGA-RD-A8NB-01 5 149449771 149449771 C T CSF1R Nonsense_Mutation p.W431* 0.10 TCGA-RD-A8NB-01 5 150502507 150502507 G A ANXA6 Missense_Mutation p.R402W 0.14 deleterious(0.02) possibly_damaging(0.905) TCGA-RD-A8NB-01 5 150856254 150856254 T C SLC36A1 Missense_Mutation p.L309P 0.10 deleterious(0.01) possibly_damaging(0.833) TCGA-RD-A8NB-01 5 150924462 150924462 A G FAT2 Missense_Mutation p.Y2076H 0.12 benign(0.021) TCGA-RD-A8NB-01 5 151051239 151051239 G T SPARC Missense_Mutation p.H75Q 0.13 deleterious(0.02) benign(0.407) TCGA-RD-A8NB-01 5 154270970 154270970 C T GEMIN5 Missense_Mutation p.A1365T 0.06 deleterious(0) probably_damaging(0.999) TCGA-RD-A8NB-01 5 160059314 160059314 T C ATP10B Missense_Mutation p.Q481R 0.12 tolerated(0.39) benign(0.008) TCGA-RD-A8NB-01 5 160721244 160721244 C T GABRB2 Silent p.A461A 0.16 TCGA-RD-A8NB-01 5 167674603 167674603 C T TENM2 Missense_Mutation p.P2220L 0.12 tolerated(0.38) benign(0.001) TCGA-RD-A8NB-01 5 169031291 169031291 T C SPDL1 3'UTR 0.18 TCGA-RD-A8NB-01 5 172315753 172315753 C T ERGIC1 Silent p.T24T 0.18 TCGA-RD-A8NB-01 5 173534413 173534413 G A NSG2 Missense_Mutation p.V141M 0.10 tolerated(0.23) benign(0.028) TCGA-RD-A8NB-01 5 176025680 176025680 G A GPRIN1 Missense_Mutation p.R386C 0.17 tolerated(0.08) benign(0.188) TCGA-RD-A8NB-01 5 176517590 176517590 C T FGFR4 Silent p.G97G 0.11 TCGA-RD-A8NB-01 5 176665252 176665252 T C NSD1 Silent p.C1312C 0.19 TCGA-RD-A8NB-01 5 179043885 179043885 C T HNRNPH1 Missense_Mutation p.G398R 0.15 deleterious(0.05) probably_damaging(0.91) TCGA-RD-A8NB-01 5 33630932 33630932 A G ADAMTS12 Missense_Mutation p.F659L 0.10 deleterious(0.01) possibly_damaging(0.861) TCGA-RD-A8NB-01 5 37052625 37052625 G A NIPBL Missense_Mutation p.R2407Q 0.10 deleterious(0) probably_damaging(0.999) TCGA-RD-A8NB-01 5 37722989 37722989 G A WDR70 Missense_Mutation p.R517Q 0.09 deleterious(0.04) benign(0.082) TCGA-RD-A8NB-01 5 38886239 38886239 A - OSMR Frame_Shift_Del p.N314Ifs*3 0.11 TCGA-RD-A8NB-01 5 54566425 54566425 G A DHX29 Nonsense_Mutation p.R992* 0.11 TCGA-RD-A8NB-01 5 5476135 5476135 C A KIAA0947 Missense_Mutation p.H2155N 0.16 tolerated(0.06) probably_damaging(0.973) TCGA-RD-A8NB-01 5 64100159 64100159 C T CWC27 Missense_Mutation p.A295V 0.11 tolerated(0.27) benign(0.003) TCGA-RD-A8NB-01 5 82834420 82834420 A C VCAN Silent p.V1866V 0.11 TCGA-RD-A8NB-01 5 98206409 98206409 T - CHD1 Frame_Shift_Del p.E1321Kfs*22 0.14 TCGA-RD-A8NB-01 6 109769406 109769406 C A MICAL1 Missense_Mutation p.G619C 0.21 deleterious(0.01) benign(0.443) TCGA-RD-A8NB-01 6 117884395 117884395 C A GOPC 3'UTR 0.11 TCGA-RD-A8NB-01 6 131992409 131992409 A G ENPP3 Missense_Mutation p.K195R 0.10 tolerated(0.36) possibly_damaging(0.794) TCGA-RD-A8NB-01 6 146673596 146673596 A T GRM1 Missense_Mutation p.E466V 0.10 tolerated(0.26) benign(0.021) TCGA-RD-A8NB-01 6 152655255 152655255 G T SYNE1 Missense_Mutation p.L4228M 0.14 benign(0.338) TCGA-RD-A8NB-01 6 158541490 158541490 C T SERAC1 Missense_Mutation p.G378D 0.09 deleterious(0) probably_damaging(0.996) TCGA-RD-A8NB-01 6 160176200 160176200 A C WTAP Missense_Mutation p.S250R 0.15 tolerated(0.18) benign(0.401) TCGA-RD-A8NB-01 6 170878813 170878813 T C TBP Missense_Mutation p.V264A 0.13 deleterious(0) probably_damaging(0.965) TCGA-RD-A8NB-01 6 26234585 26234585 C T HIST1H1D Missense_Mutation p.A193T 0.10 tolerated(0.1) unknown(0) TCGA-RD-A8NB-01 6 27782190 27782190 G A HIST1H2AJ Missense_Mutation p.P110L 0.06 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-RD-A8NB-01 6 30680028 30680028 A G MDC1 Missense_Mutation p.V564A 0.12 tolerated(0.12) benign(0.096) TCGA-RD-A8NB-01 6 31927115 31927115 G A SKIV2L Missense_Mutation p.V22M 0.09 deleterious(0.02) benign(0.273) TCGA-RD-A8NB-01 6 32021195 32021195 C T TNXB Missense_Mutation p.V2919M 0.20 possibly_damaging(0.791) TCGA-RD-A8NB-01 6 32154391 32154391 C T PBX2 Missense_Mutation p.R397Q 0.16 tolerated(1) benign(0.003) TCGA-RD-A8NB-01 6 33245481 33245481 C T B3GALT4 Silent p.G95G 0.10 TCGA-RD-A8NB-01 6 35258042 35258042 G T ZNF76 Splice_Site p.X145_splice 0.07 TCGA-RD-A8NB-01 6 38781849 38781849 T A DNAH8 Missense_Mutation p.S876T 0.11 benign(0.002) TCGA-RD-A8NB-01 6 39196900 39196900 G A KCNK5 5'UTR 0.14 TCGA-RD-A8NB-01 6 42851270 42851270 C T RPL7L1 Missense_Mutation p.R68C 0.16 tolerated(0.09) benign(0.066) TCGA-RD-A8NB-01 6 47678561 47678561 A - GPR115 Frame_Shift_Del p.K82Sfs*29 0.19 TCGA-RD-A8NB-01 6 64415953 64415953 A - PHF3 Frame_Shift_Del p.V1137* 0.16 TCGA-RD-A8NB-01 6 74063587 74063587 C T DPPA5 Missense_Mutation p.R94H 0.41 tolerated(0.32) benign(0.023) TCGA-RD-A8NB-01 6 76023993 76023993 T - FILIP1 Frame_Shift_Del p.I519* 0.10 TCGA-RD-A8NB-01 6 7888957 7888957 G T TXNDC5 Missense_Mutation p.A315D 0.10 tolerated(0.37) benign(0.009) TCGA-RD-A8NB-01 6 7888968 7888968 C T TXNDC5 Silent p.P311P 0.13 TCGA-RD-A8NB-01 6 83905449 83905449 T C RWDD2A Missense_Mutation p.F113L 0.16 tolerated(1) benign(0) TCGA-RD-A8NB-01 6 88853768 88853768 C T CNR1 Missense_Mutation p.R409Q 0.13 tolerated(0.38) benign(0.178) TCGA-RD-A8NB-01 6 99848377 99848377 T - PNISR 3'UTR 0.22 TCGA-RD-A8NB-01 7 100675955 100675955 T A MUC17 Missense_Mutation p.S420T 0.08 benign(0.001) TCGA-RD-A8NB-01 7 100780832 100780832 A T SERPINE1 3'UTR 0.25 TCGA-RD-A8NB-01 7 103061308 103061308 T - SLC26A5 Frame_Shift_Del p.I57* 0.12 TCGA-RD-A8NB-01 7 107338556 107338556 C T SLC26A4 Silent p.N538N 0.10 TCGA-RD-A8NB-01 7 108155274 108155275 - T PNPLA8 Frame_Shift_Ins p.M221Nfs*8 0.14 TCGA-RD-A8NB-01 7 123594459 123594459 C T SPAM1 Missense_Mutation p.R279C 0.16 deleterious(0) probably_damaging(1) TCGA-RD-A8NB-01 7 124487011 124487011 G A POT1 Nonsense_Mutation p.Q331* 0.10 TCGA-RD-A8NB-01 7 127569312 127569312 C T SND1 Silent p.Y533Y 0.14 TCGA-RD-A8NB-01 7 127670500 127670500 C T LRRC4 Missense_Mutation p.G65D 0.15 tolerated(0.18) benign(0.005) TCGA-RD-A8NB-01 7 129394936 129394936 C T NRF1 Missense_Mutation p.A476V 0.12 tolerated_low_confidence(0.12) probably_damaging(0.998) TCGA-RD-A8NB-01 7 135263622 135263622 C T NUP205 Missense_Mutation p.A334V 0.18 deleterious(0.01) possibly_damaging(0.853) TCGA-RD-A8NB-01 7 137256003 137256003 T - DGKI Frame_Shift_Del p.N622Tfs*49 0.17 TCGA-RD-A8NB-01 7 14188820 14188820 G A DGKB Missense_Mutation p.P784L 0.13 deleterious(0.03) benign(0.187) TCGA-RD-A8NB-01 7 142119997 142119997 G A TRBV7-7 Missense_Mutation p.A57V 0.09 tolerated(0.08) benign(0.026) TCGA-RD-A8NB-01 7 150696407 150696407 C T NOS3 Silent p.I362I 0.08 TCGA-RD-A8NB-01 7 154862577 154862577 G C HTR5A 5'UTR 0.13 TCGA-RD-A8NB-01 7 154862578 154862578 C A HTR5A 5'UTR 0.12 TCGA-RD-A8NB-01 7 154862793 154862793 C T HTR5A-AS1 Missense_Mutation p.S74N 0.13 deleterious_low_confidence(0.04) benign(0.383) TCGA-RD-A8NB-01 7 155255257 155255257 C T EN2 Nonsense_Mutation p.Q293* 0.15 TCGA-RD-A8NB-01 7 158828667 158828667 G A VIPR2 Missense_Mutation p.A262V 0.27 tolerated(0.8) possibly_damaging(0.527) TCGA-RD-A8NB-01 7 21920421 21920421 C A DNAH11 Silent p.P4106P 0.08 TCGA-RD-A8NB-01 7 21945915 21945915 T C CDCA7L Missense_Mutation p.T305A 0.18 tolerated(0.72) benign(0.009) TCGA-RD-A8NB-01 7 27147982 27147982 G - HOXA3 Frame_Shift_Del p.P295Rfs*81 0.09 TCGA-RD-A8NB-01 7 27194611 27194611 C T HOXA7 Missense_Mutation p.V204M 0.21 tolerated_low_confidence(0.21) unknown(0) TCGA-RD-A8NB-01 7 27209221 27209221 G T RP1-170O19.20 Intron 0.14 TCGA-RD-A8NB-01 7 32594201 32594201 A - AVL9 Frame_Shift_Del p.K203Rfs*9 0.12 TCGA-RD-A8NB-01 7 34125678 34125678 G A BMPER Silent p.S573S 0.29 TCGA-RD-A8NB-01 7 37780562 37780562 C T GPR141 Silent p.V189V 0.07 TCGA-RD-A8NB-01 7 37780680 37780680 T - GPR141 Frame_Shift_Del p.F230Lfs*2 0.15 TCGA-RD-A8NB-01 7 38305143 38305143 C T TRGC1 Nonsense_Mutation p.W46* 0.16 TCGA-RD-A8NB-01 7 44116165 44116165 G A POLM Nonsense_Mutation p.R260* 0.10 TCGA-RD-A8NB-01 7 44189377 44189377 C T GCK Missense_Mutation p.E222K 0.15 tolerated(0.06) probably_damaging(0.999) TCGA-RD-A8NB-01 7 64168097 64168097 A G ZNF107 Missense_Mutation p.E472G 0.08 deleterious(0.01) probably_damaging(0.983) TCGA-RD-A8NB-01 7 73811456 73811456 G A CLIP2 Missense_Mutation p.G925R 0.16 tolerated(0.47) probably_damaging(0.951) TCGA-RD-A8NB-01 7 82579407 82579407 G A PCLO Silent p.D3499D 0.17 TCGA-RD-A8NB-01 7 87536824 87536824 A G DBF4 Silent p.K457K 0.06 TCGA-RD-A8NB-01 7 95025669 95025669 G A PON3 5'UTR 0.12 TCGA-RD-A8NB-01 7 99273783 99273783 C T CYP3A5 Silent p.G40G 0.09 TCGA-RD-A8NB-01 7 99691676 99691676 T C MCM7 Intron 0.18 TCGA-RD-A8NB-01 7 99701287 99701287 G A AP4M1 Missense_Mutation p.R172H 0.10 deleterious(0) probably_damaging(0.987) TCGA-RD-A8NB-01 7 99705011 99705011 G - TAF6 Frame_Shift_Del p.P668Rfs*? 0.11 TCGA-RD-A8NB-01 8 103664063 103664063 T G KLF10 Missense_Mutation p.N166T 0.08 tolerated(0.22) benign(0.004) TCGA-RD-A8NB-01 8 104078603 104078603 T C ATP6V1C1 Silent p.T327T 0.10 TCGA-RD-A8NB-01 8 104513158 104513158 C T RIMS2 Missense_Mutation p.P15L 0.14 deleterious_low_confidence(0) benign(0) TCGA-RD-A8NB-01 8 106813708 106813708 T G ZFPM2 Silent p.S466S 0.12 TCGA-RD-A8NB-01 8 110520488 110520488 T C PKHD1L1 Missense_Mutation p.I3797T 0.10 deleterious(0) probably_damaging(0.974) TCGA-RD-A8NB-01 8 116631645 116631645 G T TRPS1 Missense_Mutation p.P227H 0.07 deleterious_low_confidence(0) probably_damaging(1) TCGA-RD-A8NB-01 8 120233858 120233860 CCT - MAL2 In_Frame_Del p.S57del 0.12 TCGA-RD-A8NB-01 8 124351634 124351634 G A ATAD2 Missense_Mutation p.P924L 0.07 deleterious(0) possibly_damaging(0.735) TCGA-RD-A8NB-01 8 125597329 125597329 T - MTSS1 Frame_Shift_Del p.R155Efs*34 0.13 TCGA-RD-A8NB-01 8 131072882 131072882 G A ASAP1 Silent p.N1045N 0.10 TCGA-RD-A8NB-01 8 133141659 133141659 C T KCNQ3 Silent p.G823G 0.10 TCGA-RD-A8NB-01 8 133723148 133723148 G T TMEM71 3'UTR 0.10 TCGA-RD-A8NB-01 8 145001228 145001228 T G PLEC Missense_Mutation p.T1425P 0.14 unknown(0) TCGA-RD-A8NB-01 8 145157990 145157990 C A SHARPIN Missense_Mutation p.V114F 0.11 deleterious(0) benign(0.231) TCGA-RD-A8NB-01 8 145616191 145616191 C - ADCK5 Frame_Shift_Del p.E162Sfs*9 0.14 TCGA-RD-A8NB-01 8 22138992 22138992 A G PIWIL2 Missense_Mutation p.D130G 0.13 tolerated_low_confidence(0.14) benign(0.001) TCGA-RD-A8NB-01 8 22865321 22865321 G A RHOBTB2 Intron 0.08 TCGA-RD-A8NB-01 8 27147682 27147682 C T TRIM35 Missense_Mutation p.R259Q 0.12 deleterious(0.03) probably_damaging(0.931) TCGA-RD-A8NB-01 8 27729372 27729372 T C SCARA5 3'UTR 0.12 TCGA-RD-A8NB-01 8 28573665 28573665 C T EXTL3 Missense_Mutation p.T30M 0.13 deleterious(0.03) benign(0.014) TCGA-RD-A8NB-01 8 28600659 28600659 T C EXTL3 Silent p.D826D 0.14 TCGA-RD-A8NB-01 8 30925793 30925793 G A WRN Missense_Mutation p.R225Q 0.15 tolerated(1) benign(0.004) TCGA-RD-A8NB-01 8 32453511 32453511 A - NRG1 Frame_Shift_Del p.K91Sfs*24 0.11 TCGA-RD-A8NB-01 8 35624464 35624464 G A UNC5D Silent p.L786L 0.23 TCGA-RD-A8NB-01 8 37986318 37986318 C A ASH2L Missense_Mutation p.S459Y 0.09 deleterious(0) probably_damaging(0.959) TCGA-RD-A8NB-01 8 48744449 48744449 G A PRKDC Missense_Mutation p.R2730W 0.11 probably_damaging(0.994) TCGA-RD-A8NB-01 8 48801713 48801713 C T PRKDC Missense_Mutation p.S1380N 0.11 benign(0.02) TCGA-RD-A8NB-01 8 48882455 48882455 G A MCM4 Silent p.T424T 0.16 TCGA-RD-A8NB-01 8 71508497 71508497 C T TRAM1 Splice_Site p.X162_splice 0.14 TCGA-RD-A8NB-01 8 72987692 72987692 G A TRPA1 5'UTR 0.11 TCGA-RD-A8NB-01 8 77617133 77617133 C T ZFHX4 Silent p.S270S 0.10 TCGA-RD-A8NB-01 8 77765709 77765709 A G ZFHX4 Silent p.E2184E 0.07 TCGA-RD-A8NB-01 8 82391144 82391144 C T FABP4 Missense_Mutation p.V119I 0.10 tolerated(0.27) benign(0) TCGA-RD-A8NB-01 8 92307779 92307779 T C SLC26A7 Silent p.L109L 0.08 TCGA-RD-A8NB-01 8 94929359 94929359 C A PDP1 5'UTR 0.25 TCGA-RD-A8NB-01 8 95419861 95419861 A G RAD54B Missense_Mutation p.V196A 0.11 tolerated(0.28) benign(0.005) TCGA-RD-A8NB-01 9 100092783 100092783 C T CCDC180 Silent p.L714L 0.09 TCGA-RD-A8NB-01 9 109691950 109691950 G A ZNF462 Silent p.Q1919Q 0.09 TCGA-RD-A8NB-01 9 109697875 109697875 A - ZNF462 Frame_Shift_Del p.T2071Hfs*23 0.12 TCGA-RD-A8NB-01 9 111624670 111624670 T C ACTL7A Missense_Mutation p.L23P 0.11 tolerated_low_confidence(0.16) benign(0) TCGA-RD-A8NB-01 9 116187660 116187660 A G C9orf43 Missense_Mutation p.Q301R 0.14 tolerated(0.47) benign(0.002) TCGA-RD-A8NB-01 9 116811349 116811349 C T ZNF618 Silent p.R496R 0.15 TCGA-RD-A8NB-01 9 124544751 124544751 G A DAB2IP Intron 0.09 TCGA-RD-A8NB-01 9 126133230 126133230 G A CRB2 Missense_Mutation p.R633Q 0.15 deleterious(0) benign(0.238) TCGA-RD-A8NB-01 9 128432166 128432166 G A MAPKAP1 Nonsense_Mutation p.R94* 0.19 TCGA-RD-A8NB-01 9 132576336 132576336 G A TOR1A Missense_Mutation p.T305I 0.10 tolerated(0.22) probably_damaging(0.998) TCGA-RD-A8NB-01 9 134103546 134103546 G T NUP214 Splice_Site p.X1968_splice 0.10 TCGA-RD-A8NB-01 9 136132794 136132794 A G RP11-430N14.4 5'Flank 0.21 TCGA-RD-A8NB-01 9 136320457 136320457 C T ADAMTS13 Silent p.L1100L 0.11 TCGA-RD-A8NB-01 9 139405225 139405225 C T NOTCH1 Missense_Mutation p.V874I 0.09 tolerated(0.14) probably_damaging(0.999) TCGA-RD-A8NB-01 9 14823319 14823319 C A FREM1 Missense_Mutation p.V726L 0.11 deleterious(0) possibly_damaging(0.725) TCGA-RD-A8NB-01 9 18680345 18680345 C T ADAMTSL1 Missense_Mutation p.S391L 0.29 deleterious(0) probably_damaging(0.975) TCGA-RD-A8NB-01 9 2086916 2086916 G A SMARCA2 Missense_Mutation p.V872M 0.15 benign(0.003) TCGA-RD-A8NB-01 9 21228093 21228093 G T IFNA17 Missense_Mutation p.P27H 0.14 deleterious(0.01) benign(0.303) TCGA-RD-A8NB-01 9 32543241 32543241 A C TOPORS Missense_Mutation p.S428A 0.09 tolerated(0.19) benign(0.298) TCGA-RD-A8NB-01 9 35313986 35313986 G T UNC13B Missense_Mutation p.E389D 0.18 deleterious_low_confidence(0) benign(0.311) TCGA-RD-A8NB-01 9 35397282 35397282 C T UNC13B Missense_Mutation p.A1135V 0.12 deleterious(0) benign(0.06) TCGA-RD-A8NB-01 9 38413347 38413347 T C IGFBPL1 Missense_Mutation p.T192A 0.10 tolerated(0.19) benign(0.057) TCGA-RD-A8NB-01 9 6328929 6328929 G A TPD52L3 Missense_Mutation p.V112M 0.08 tolerated(1) benign(0.01) TCGA-RD-A8NB-01 9 88937823 88937823 A - ZCCHC6 Frame_Shift_Del p.Y948Mfs*16 0.24 TCGA-RD-A8NB-01 9 90264846 90264846 C - DAPK1 Frame_Shift_Del p.L482Cfs*23 0.18 TCGA-RD-A8NB-01 9 94060274 94060274 C T AUH Missense_Mutation p.R197Q 0.10 deleterious(0) probably_damaging(0.994) TCGA-RD-A8NB-01 9 94499729 94499729 C T ROR2 Missense_Mutation p.R189Q 0.09 tolerated(0.47) benign(0.023) TCGA-RD-A8NB-01 9 98215881 98215881 C T PTCH1 Missense_Mutation p.D1110N 0.14 tolerated(0.66) benign(0.051) TCGA-RD-A8NB-01 X 10066564 10066564 A G WWC3 Missense_Mutation p.T226A 0.06 tolerated(0.14) benign(0.127) TCGA-RD-A8NB-01 X 10094279 10094279 C T WWC3 Missense_Mutation p.A680V 0.11 tolerated(0.38) benign(0.005) TCGA-RD-A8NB-01 X 103359097 103359097 C T ZCCHC18 Missense_Mutation p.R99C 0.17 tolerated(0.08) possibly_damaging(0.901) TCGA-RD-A8NB-01 X 108696740 108696740 G A GUCY2F Missense_Mutation p.H461Y 0.15 tolerated(0.4) benign(0.016) TCGA-RD-A8NB-01 X 111697882 111697882 C A ZCCHC16 5'UTR 0.10 TCGA-RD-A8NB-01 X 111914576 111914576 G T LHFPL1 Missense_Mutation p.L15M 0.09 deleterious(0.01) possibly_damaging(0.824) TCGA-RD-A8NB-01 X 118767456 118767456 C G SEPT6 Splice_Site p.X319_splice 0.20 TCGA-RD-A8NB-01 X 129159351 129159351 G A BCORL1 Missense_Mutation p.A1359T 0.09 benign(0.045) TCGA-RD-A8NB-01 X 135453568 135453568 T C GPR112 Missense_Mutation p.I2493T 0.12 deleterious(0) benign(0.351) TCGA-RD-A8NB-01 X 1409316 1409316 C T CSF2RA Missense_Mutation p.T187M 0.13 deleterious(0.03) probably_damaging(0.98) TCGA-RD-A8NB-01 X 142716557 142716557 T - SLITRK4 Frame_Shift_Del p.S790Vfs*5 0.08 TCGA-RD-A8NB-01 X 153248117 153248117 C A TMEM187 Missense_Mutation p.L202M 0.10 tolerated(0.12) probably_damaging(0.958) TCGA-RD-A8NB-01 X 153543641 153543641 A C TKTL1 Missense_Mutation p.E328A 0.07 tolerated(0.67) benign(0.074) TCGA-RD-A8NB-01 X 153577312 153577312 A G FLNA Missense_Mutation p.S2617P 0.18 deleterious(0) possibly_damaging(0.713) TCGA-RD-A8NB-01 X 153631697 153631697 C T RPL10 3'Flank 0.24 TCGA-RD-A8NB-01 X 153774301 153774301 C T G6PD Missense_Mutation p.D54N 0.12 tolerated(0.48) benign(0.002) TCGA-RD-A8NB-01 X 154158019 154158019 C T F8 Missense_Mutation p.R1349K 0.15 tolerated(0.64) benign(0.001) TCGA-RD-A8NB-01 X 15582333 15582333 C T ACE2 Missense_Mutation p.R708Q 0.11 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-RD-A8NB-01 X 1585347 1585347 C T P2RY8 Silent p.A35A 0.23 TCGA-RD-A8NB-01 X 17818712 17818712 G A RAI2 Silent p.S473S 0.06 TCGA-RD-A8NB-01 X 18602408 18602408 C T CDKL5 Silent p.G163G 0.09 TCGA-RD-A8NB-01 X 19410165 19410165 A G MAP3K15 Missense_Mutation p.S796P 0.08 deleterious(0) probably_damaging(0.991) TCGA-RD-A8NB-01 X 24228499 24228499 T C ZFX Missense_Mutation p.L475P 0.09 deleterious(0) probably_damaging(0.974) TCGA-RD-A8NB-01 X 301641 301641 C T PPP2R3B Missense_Mutation p.G404R 0.18 deleterious(0) probably_damaging(0.993) TCGA-RD-A8NB-01 X 34148360 34148360 A G FAM47A Missense_Mutation p.F679S 0.12 deleterious(0.03) benign(0.266) TCGA-RD-A8NB-01 X 34150284 34150284 G T FAM47A Missense_Mutation p.L38M 0.16 tolerated(0.06) probably_damaging(0.977) TCGA-RD-A8NB-01 X 39922049 39922049 G A BCOR Missense_Mutation p.R1375W 0.09 deleterious(0) possibly_damaging(0.556) TCGA-RD-A8NB-01 X 41026804 41026804 C T USP9X Missense_Mutation p.L800F 0.11 deleterious(0) probably_damaging(0.986) TCGA-RD-A8NB-01 X 41089034 41089035 - A USP9X Frame_Shift_Ins p.A2481Sfs*17 0.15 TCGA-RD-A8NB-01 X 41203299 41203299 G T DDX3X Missense_Mutation p.G261V 0.17 deleterious(0.04) benign(0.207) TCGA-RD-A8NB-01 X 47518302 47518302 C T UXT Missense_Mutation p.A21T 0.20 tolerated_low_confidence(0.08) possibly_damaging(0.492) TCGA-RD-A8NB-01 X 48054788 48054788 C T SSX5 Missense_Mutation p.G3R 0.16 tolerated_low_confidence(0.1) probably_damaging(0.933) TCGA-RD-A8NB-01 X 51644889 51644889 T G MAGED1 Missense_Mutation p.F790V 0.09 deleterious_low_confidence(0.01) benign(0.125) TCGA-RD-A8NB-01 X 52825493 52825495 TCC - SPANXN5 3'UTR 0.09 TCGA-RD-A8NB-01 X 54836491 54836491 C T MAGED2 Missense_Mutation p.H128Y 0.13 tolerated_low_confidence(1) benign(0.124) TCGA-RD-A8NB-01 X 64719792 64719792 G A ZC3H12B Missense_Mutation p.R338H 0.06 deleterious(0) probably_damaging(0.982) TCGA-RD-A8NB-01 X 65242169 65242169 C T VSIG4 Missense_Mutation p.R379H 0.09 tolerated(0.58) benign(0) TCGA-RD-A8NB-01 X 68836542 68836542 G A EDA Silent p.G130G 0.13 TCGA-RD-A8NB-01 X 69510346 69510346 C T KIF4A Missense_Mutation p.A13V 0.09 deleterious(0.02) benign(0.334) TCGA-RD-A8NB-01 X 77268381 77268381 C T ATP7A Silent p.F726F 0.12 TCGA-RD-A8NB-01 X 77393458 77393458 C T TAF9B Splice_Site p.X90_splice 0.15 TCGA-RD-A8NB-01 X 80457636 80457636 C T SH3BGRL 5'UTR 0.18 TCGA-RD-A8NB-01 X 85969708 85969708 T C DACH2 Silent p.G363G 0.13 TCGA-RD-A8NB-01 X 9714150 9714150 T A GPR143 Missense_Mutation p.M198L 0.11 tolerated(0.07) benign(0.044) TCGA-RD-A8NB-01 X 99661985 99661985 G A PCDH19 Silent p.D537D 0.10 TCGA-SW-A7EA-01 10 101802147 101802148 - A CPN1 3'UTR 0.27 TCGA-SW-A7EA-01 10 101945291 101945291 G A ERLIN1 Silent p.G31G 0.35 TCGA-SW-A7EA-01 10 103907125 103907125 C - PPRC1 Frame_Shift_Del p.P1461Hfs*79 0.30 TCGA-SW-A7EA-01 10 106924110 106924110 C A SORCS3 Silent p.S594S 0.32 TCGA-SW-A7EA-01 10 108336957 108336957 T - SORCS1 3'Flank 0.26 TCGA-SW-A7EA-01 10 12077223 12077223 T - UPF2 Frame_Shift_Del p.K67Rfs*14 0.25 TCGA-SW-A7EA-01 10 1262905 1262905 C T ADARB2 Silent p.T556T 0.20 TCGA-SW-A7EA-01 10 127452032 127452032 C T EDRF1 Silent p.A1236A 0.24 TCGA-SW-A7EA-01 10 128973811 128973811 C T FAM196A Silent p.P283P 0.26 TCGA-SW-A7EA-01 10 134598862 134598862 G A NKX6-2 Silent p.F167F 0.35 TCGA-SW-A7EA-01 10 134660515 134660515 G A TTC40 Missense_Mutation p.A2063V 0.47 deleterious(0) probably_damaging(0.938) TCGA-SW-A7EA-01 10 17271496 17271496 C T VIM Silent p.S25S 0.14 TCGA-SW-A7EA-01 10 17271775 17271775 C T VIM Silent p.I118I 0.38 TCGA-SW-A7EA-01 10 1779416 1779416 G A ADARB2 5'UTR 0.25 TCGA-SW-A7EA-01 10 21124449 21124449 G A NEBL Missense_Mutation p.A481V 0.31 tolerated(0.77) benign(0.02) TCGA-SW-A7EA-01 10 25464703 25464703 G A GPR158 Silent p.A118A 0.29 TCGA-SW-A7EA-01 10 30318744 30318744 G A KIAA1462 Silent p.N111N 0.23 TCGA-SW-A7EA-01 10 32311796 32311796 A G KIF5B Missense_Mutation p.C632R 0.26 deleterious(0.01) possibly_damaging(0.564) TCGA-SW-A7EA-01 10 35351915 35351916 - A CUL2 Frame_Shift_Ins p.L84Ffs*10 0.19 TCGA-SW-A7EA-01 10 48389580 48389580 G A RBP3 Missense_Mutation p.S433L 0.48 deleterious(0.04) probably_damaging(0.971) TCGA-SW-A7EA-01 10 48413908 48413908 G A GDF2 Silent p.S320S 0.45 TCGA-SW-A7EA-01 10 50690757 50690758 - C ERCC6 Frame_Shift_Ins p.Y716Ifs*44 0.26 TCGA-SW-A7EA-01 10 55755454 55755454 C A PCDH15 Missense_Mutation p.K941N 0.29 tolerated(0.05) probably_damaging(0.996) TCGA-SW-A7EA-01 10 61014202 61014202 A G FAM13C Missense_Mutation p.V413A 0.38 deleterious(0.03) benign(0.011) TCGA-SW-A7EA-01 10 76861664 76861664 G A DUSP13 Intron 0.28 TCGA-SW-A7EA-01 10 7786853 7786853 C A ITIH2 Silent p.P836P 0.37 TCGA-SW-A7EA-01 10 78771791 78771791 A - KCNMA1 Frame_Shift_Del p.Y676Tfs*15 0.23 TCGA-SW-A7EA-01 10 79595502 79595502 C T DLG5 Missense_Mutation p.S539N 0.34 deleterious(0) probably_damaging(0.985) TCGA-SW-A7EA-01 10 94834243 94834243 G A CYP26A1 Missense_Mutation p.G123D 0.34 tolerated(0.45) benign(0.009) TCGA-SW-A7EA-01 10 95721201 95721201 C T PIPSL RNA 0.24 TCGA-SW-A7EA-01 10 96259980 96259980 G A TBC1D12 Missense_Mutation p.R472H 0.31 tolerated(0.18) benign(0.01) TCGA-SW-A7EA-01 10 97096288 97096288 C T SORBS1 Missense_Mutation p.G1210D 0.22 tolerated_low_confidence(0.08) benign(0.101) TCGA-SW-A7EA-01 10 97920553 97920553 A C ZNF518A RNA 0.40 TCGA-SW-A7EA-01 10 98416610 98416610 G A PIK3AP1 Missense_Mutation p.T171M 0.38 tolerated(0.12) benign(0.003) TCGA-SW-A7EA-01 10 99410803 99410803 C T PI4K2A Missense_Mutation p.R151C 0.30 deleterious(0) probably_damaging(1) TCGA-SW-A7EA-01 11 101937222 101937222 A G C11orf70 Missense_Mutation p.E92G 0.29 tolerated(0.18) benign(0.102) TCGA-SW-A7EA-01 11 103059290 103059290 T G DYNC2H1 Missense_Mutation p.I2402S 0.33 probably_damaging(0.913) TCGA-SW-A7EA-01 11 105880739 105880739 A - MSANTD4 Frame_Shift_Del p.F187Lfs*19 0.24 TCGA-SW-A7EA-01 11 108043205 108043205 A - NPAT Frame_Shift_Del p.S836Qfs*17 0.15 TCGA-SW-A7EA-01 11 10822361 10822362 TT - EIF4G2 Frame_Shift_Del p.K520Nfs*2 0.15 TCGA-SW-A7EA-01 11 113102926 113102926 C A NCAM1 Nonsense_Mutation p.Y474* 0.31 TCGA-SW-A7EA-01 11 113268045 113268045 C T ANKK1 Missense_Mutation p.S313L 0.25 tolerated(0.24) benign(0.003) TCGA-SW-A7EA-01 11 11913560 11913560 G T USP47 Missense_Mutation p.G67C 0.23 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-SW-A7EA-01 11 122805598 122805598 G A C11orf63 Silent p.Q483Q 0.31 TCGA-SW-A7EA-01 11 122827255 122827255 G A C11orf63 Missense_Mutation p.G661R 0.41 deleterious(0) probably_damaging(0.998) TCGA-SW-A7EA-01 11 123396845 123396845 G A GRAMD1B 5'UTR 0.50 TCGA-SW-A7EA-01 11 1262090 1262091 - C MUC5B Frame_Shift_Ins p.V1329Gfs*31 0.38 TCGA-SW-A7EA-01 11 126283889 126283889 G A ST3GAL4 Missense_Mutation p.A317T 0.25 tolerated(0.34) possibly_damaging(0.906) TCGA-SW-A7EA-01 11 13716475 13716475 C T FAR1 Nonsense_Mutation p.R55* 0.18 TCGA-SW-A7EA-01 11 1643024 1643025 - C KRTAP5-4 Frame_Shift_Ins p.C101Lfs*43 0.12 TCGA-SW-A7EA-01 11 26655759 26655759 C G ANO3 Missense_Mutation p.R628G 0.36 deleterious(0) probably_damaging(1) TCGA-SW-A7EA-01 11 33076207 33076207 C G TCP11L1 Missense_Mutation p.L78V 0.20 deleterious(0) possibly_damaging(0.67) TCGA-SW-A7EA-01 11 33106697 33106697 T G CSTF3 Missense_Mutation p.K697T 0.05 tolerated(0.48) benign(0.008) TCGA-SW-A7EA-01 11 33564392 33564392 C T KIAA1549L Missense_Mutation p.A131V 0.36 tolerated_low_confidence(0.08) benign(0.01) TCGA-SW-A7EA-01 11 33777370 33777370 C T FBXO3 Missense_Mutation p.A209T 0.37 deleterious(0.03) benign(0.316) TCGA-SW-A7EA-01 11 428597 428597 G A ANO9 Missense_Mutation p.R355C 0.25 deleterious(0) probably_damaging(1) TCGA-SW-A7EA-01 11 44296999 44296999 G A ALX4 Silent p.L226L 0.26 TCGA-SW-A7EA-01 11 45672481 45672481 C T CHST1 5'UTR 0.23 TCGA-SW-A7EA-01 11 47196853 47196853 A - ARFGAP2 Frame_Shift_Del p.R93Afs*43 0.40 TCGA-SW-A7EA-01 11 4824866 4824866 A G OR52R1 Missense_Mutation p.C249R 0.36 deleterious(0.01) benign(0.25) TCGA-SW-A7EA-01 11 558069 558069 G - C11orf35 Intron 0.30 TCGA-SW-A7EA-01 11 59225113 59225113 C A OR4D6 Missense_Mutation p.S227Y 0.31 deleterious(0.02) possibly_damaging(0.701) TCGA-SW-A7EA-01 11 610651 610651 G A PHRF1 Missense_Mutation p.A1522T 0.24 tolerated(1) benign(0) TCGA-SW-A7EA-01 11 61136107 61136107 G A TMEM138 Missense_Mutation p.V139I 0.34 tolerated(0.33) benign(0.002) TCGA-SW-A7EA-01 11 61563798 61563798 G A FEN1 Missense_Mutation p.R322H 0.45 deleterious(0) benign(0.004) TCGA-SW-A7EA-01 11 62299320 62299320 C T AHNAK Missense_Mutation p.A857T 0.26 probably_damaging(0.939) TCGA-SW-A7EA-01 11 62472899 62472899 A T BSCL2 Missense_Mutation p.L93Q 0.23 deleterious(0) probably_damaging(0.996) TCGA-SW-A7EA-01 11 62502997 62502997 C T TTC9C Missense_Mutation p.R128C 0.40 deleterious(0.01) benign(0.23) TCGA-SW-A7EA-01 11 62751910 62751910 G A SLC22A6 Nonsense_Mutation p.Q85* 0.16 TCGA-SW-A7EA-01 11 62910936 62910936 G A SLC22A24 Missense_Mutation p.P106S 0.22 tolerated(0.77) benign(0.012) TCGA-SW-A7EA-01 11 64662563 64662563 G A ATG2A Missense_Mutation p.P1900L 0.16 deleterious(0) probably_damaging(1) TCGA-SW-A7EA-01 11 6472535 6472536 - A TRIM3 Frame_Shift_Ins p.W556Lfs*8 0.24 TCGA-SW-A7EA-01 11 64756881 64756881 C T BATF2 Missense_Mutation p.G182D 0.20 tolerated(0.05) probably_damaging(0.953) TCGA-SW-A7EA-01 11 64820981 64820981 G A NAALADL1 Missense_Mutation p.R354C 0.31 deleterious(0) possibly_damaging(0.462) TCGA-SW-A7EA-01 11 64882837 64882837 G A TM7SF2 Missense_Mutation p.R315Q 0.22 deleterious(0) probably_damaging(0.995) TCGA-SW-A7EA-01 11 64973997 64973997 C T CAPN1 Missense_Mutation p.R473C 0.25 deleterious(0.05) probably_damaging(0.944) TCGA-SW-A7EA-01 11 65119171 65119171 C A DPF2 Missense_Mutation p.L373M 0.26 deleterious(0) probably_damaging(0.918) TCGA-SW-A7EA-01 11 65350508 65350508 T G EHBP1L1 Missense_Mutation p.L789V 0.21 tolerated(0.64) benign(0) TCGA-SW-A7EA-01 11 65651889 65651889 C T FIBP Silent p.A333A 0.15 TCGA-SW-A7EA-01 11 65660629 65660629 C - FOSL1 Frame_Shift_Del p.D182Tfs*40 0.24 TCGA-SW-A7EA-01 11 66082679 66082679 G T CD248 Missense_Mutation p.S607Y 0.05 deleterious(0.01) benign(0.272) TCGA-SW-A7EA-01 11 67275092 67275092 A C CDK2AP2 Missense_Mutation p.F51V 0.21 deleterious(0.01) probably_damaging(0.982) TCGA-SW-A7EA-01 11 68341595 68341595 G A PPP6R3 Silent p.R454R 0.18 TCGA-SW-A7EA-01 11 75439013 75439013 A C MOGAT2 Splice_Site p.X159_splice 0.58 TCGA-SW-A7EA-01 11 76376953 76376953 G T LRRC32 Missense_Mutation p.L16M 0.21 tolerated(0.12) benign(0.262) TCGA-SW-A7EA-01 11 76813970 76813970 G A OMP Missense_Mutation p.V29M 0.21 deleterious_low_confidence(0.03) benign(0.01) TCGA-SW-A7EA-01 11 8148283 8148283 A G RIC3 Missense_Mutation p.M198T 0.29 deleterious(0) possibly_damaging(0.56) TCGA-SW-A7EA-01 11 8752513 8752513 C T ST5 Silent p.A108A 0.46 TCGA-SW-A7EA-01 11 89768511 89768511 A T TRIM49C Missense_Mutation p.Q44H 0.43 deleterious(0.01) possibly_damaging(0.489) TCGA-SW-A7EA-01 11 95555113 95555113 A - CEP57 Frame_Shift_Del p.K262Rfs*31 0.33 TCGA-SW-A7EA-01 12 107237697 107237697 G A RIC8B Missense_Mutation p.R378Q 0.39 deleterious(0) probably_damaging(0.958) TCGA-SW-A7EA-01 12 108045467 108045467 A T BTBD11 Missense_Mutation p.K1003M 0.10 deleterious(0.01) probably_damaging(0.985) TCGA-SW-A7EA-01 12 108920104 108920104 G A SART3 Silent p.S714S 0.32 TCGA-SW-A7EA-01 12 109604785 109604785 G A ACACB Missense_Mutation p.R258Q 0.35 tolerated(0.26) benign(0.023) TCGA-SW-A7EA-01 12 112846375 112846375 T C RPL6 Missense_Mutation p.K29R 0.31 tolerated(0.12) benign(0.212) TCGA-SW-A7EA-01 12 113600963 113600963 C T DDX54 Silent p.R685R 0.31 TCGA-SW-A7EA-01 12 117768738 117768738 A C NOS1 Missense_Mutation p.L46R 0.35 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-SW-A7EA-01 12 124081421 124081421 A - TMED2 3'UTR 0.39 TCGA-SW-A7EA-01 12 13248626 13248626 A C GSG1 Intron 0.33 TCGA-SW-A7EA-01 12 133248884 133248884 G A POLE Silent p.L571L 0.29 TCGA-SW-A7EA-01 12 13720077 13720077 G T GRIN2B Missense_Mutation p.A827E 0.44 deleterious(0) probably_damaging(1) TCGA-SW-A7EA-01 12 21196321 21196321 G T SLCO1B7 Missense_Mutation p.G214C 0.29 deleterious(0) probably_damaging(0.978) TCGA-SW-A7EA-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.27 deleterious(0) benign(0.361) TCGA-SW-A7EA-01 12 2558243 2558243 C T CACNA1C Silent p.N193N 0.25 TCGA-SW-A7EA-01 12 43886402 43886402 T C ADAMTS20 Missense_Mutation p.T328A 0.17 tolerated(0.1) benign(0.067) TCGA-SW-A7EA-01 12 45108482 45108482 C G NELL2 Missense_Mutation p.R396T 0.31 deleterious(0.01) benign(0.159) TCGA-SW-A7EA-01 12 45567067 45567067 T C PLEKHA8P1 RNA 0.16 TCGA-SW-A7EA-01 12 4794490 4794490 G A NDUFA9 Missense_Mutation p.R321Q 0.29 tolerated(0.09) benign(0.087) TCGA-SW-A7EA-01 12 50367278 50367278 C T AQP6 Silent p.L108L 0.29 TCGA-SW-A7EA-01 12 52387834 52387834 G A ACVR1B Silent p.T527T 0.31 TCGA-SW-A7EA-01 12 52911475 52911475 G A KRT5 Missense_Mutation p.R331C 0.35 deleterious(0.02) possibly_damaging(0.632) TCGA-SW-A7EA-01 12 56118161 56118161 G T RDH5 Missense_Mutation p.K263N 0.41 tolerated(0.37) possibly_damaging(0.714) TCGA-SW-A7EA-01 12 56232290 56232290 T C MMP19 Intron 0.33 TCGA-SW-A7EA-01 12 56481806 56481806 C T ERBB3 Missense_Mutation p.A245V 0.23 tolerated(0.17) possibly_damaging(0.875) TCGA-SW-A7EA-01 12 56965606 56965606 C T RBMS2 Missense_Mutation p.T170I 0.31 tolerated(0.22) benign(0.409) TCGA-SW-A7EA-01 12 57552304 57552304 C A LRP1 Missense_Mutation p.P561T 0.33 probably_damaging(0.959) TCGA-SW-A7EA-01 12 64784342 64784342 C T C12orf56 Missense_Mutation p.A2T 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.878) TCGA-SW-A7EA-01 12 65141614 65141616 TGT - GNS In_Frame_Del p.N112del 0.32 TCGA-SW-A7EA-01 12 6946910 6946910 C T LEPREL2 Missense_Mutation p.R575C 0.29 deleterious(0) probably_damaging(0.999) TCGA-SW-A7EA-01 12 6952826 6952828 ACA - GNB3 In_Frame_Del p.N156del 0.29 TCGA-SW-A7EA-01 12 70049361 70049362 - G BEST3 Frame_Shift_Ins p.R445Qfs*58 0.34 TCGA-SW-A7EA-01 12 70932105 70932105 C T PTPRB Intron 0.40 TCGA-SW-A7EA-01 12 85279728 85279728 T C SLC6A15 Missense_Mutation p.S137G 0.31 tolerated(0.45) benign(0.16) TCGA-SW-A7EA-01 12 8673907 8673907 A G CLEC4D 3'UTR 0.29 TCGA-SW-A7EA-01 12 9095102 9095102 C - M6PR Frame_Shift_Del p.F208Sfs*7 0.21 TCGA-SW-A7EA-01 12 91572160 91572160 C T DCN Missense_Mutation p.R57H 0.23 tolerated(0.09) possibly_damaging(0.705) TCGA-SW-A7EA-01 12 93131267 93131267 T - PLEKHG7 5'UTR 0.21 TCGA-SW-A7EA-01 12 93805030 93805030 C T UBE2N Missense_Mutation p.E26K 0.39 tolerated(0.39) benign(0.005) TCGA-SW-A7EA-01 13 101182360 101182361 TG - PCCA Frame_Shift_Del p.V710Afs*23 0.23 TCGA-SW-A7EA-01 13 103440189 103440189 A T KDELC1 Missense_Mutation p.F460I 0.29 tolerated(0.07) benign(0.21) TCGA-SW-A7EA-01 13 113803399 113803399 G T F10 Missense_Mutation p.E345D 0.26 tolerated(0.17) benign(0.003) TCGA-SW-A7EA-01 13 23903642 23903642 A - SACS 3'UTR 0.40 TCGA-SW-A7EA-01 13 26125597 26125597 G A ATP8A2 Nonsense_Mutation p.W338* 0.24 TCGA-SW-A7EA-01 13 32868621 32868621 G A FRY Silent p.T2899T 0.30 TCGA-SW-A7EA-01 13 33262631 33262631 C A PDS5B Missense_Mutation p.P465H 0.24 deleterious(0) probably_damaging(0.997) TCGA-SW-A7EA-01 13 46577381 46577381 T - ZC3H13 Frame_Shift_Del p.K279Nfs*8 0.18 TCGA-SW-A7EA-01 13 61102993 61102994 - T TDRD3 Frame_Shift_Ins p.Y547Lfs*2 0.32 TCGA-SW-A7EA-01 13 76378527 76378527 C T LMO7 Missense_Mutation p.A22V 0.30 deleterious(0.03) possibly_damaging(0.509) TCGA-SW-A7EA-01 13 84454943 84454943 C T SLITRK1 Missense_Mutation p.A234T 0.31 deleterious(0.05) possibly_damaging(0.844) TCGA-SW-A7EA-01 13 98637856 98637856 G T IPO5 Missense_Mutation p.R136M 0.25 deleterious(0) probably_damaging(0.996) TCGA-SW-A7EA-01 14 101350917 101350917 G T RTL1 Missense_Mutation p.P70H 0.23 deleterious_low_confidence(0) possibly_damaging(0.87) TCGA-SW-A7EA-01 14 101451181 101451181 T C SNORD114-24 RNA 0.31 TCGA-SW-A7EA-01 14 103371998 103371998 G A TRAF3 Missense_Mutation p.M528I 0.36 deleterious(0) probably_damaging(0.997) TCGA-SW-A7EA-01 14 103390269 103390269 C T AMN Intron 0.28 TCGA-SW-A7EA-01 14 105420634 105420634 C T AHNAK2 Missense_Mutation p.R385Q 0.26 benign(0.132) TCGA-SW-A7EA-01 14 106320735 106320735 C T IGHM Missense_Mutation p.A359T 0.29 deleterious(0.02) possibly_damaging(0.5) TCGA-SW-A7EA-01 14 20344896 20344896 T C OR4K2 Missense_Mutation p.M157T 0.15 tolerated(0.2) benign(0.05) TCGA-SW-A7EA-01 14 20845640 20845640 C - TEP1 Frame_Shift_Del p.A1963Lfs*16 0.26 TCGA-SW-A7EA-01 14 21058704 21058704 T C RNASE12 Missense_Mutation p.H60R 0.23 tolerated(0.16) benign(0.006) TCGA-SW-A7EA-01 14 22433778 22433778 C T TRAV12-3 Nonsense_Mutation p.Q15* 0.20 TCGA-SW-A7EA-01 14 23894567 23894567 G A MYH7 Missense_Mutation p.R783C 0.37 deleterious(0) possibly_damaging(0.815) TCGA-SW-A7EA-01 14 28733889 28733890 - A BNIP3P1 RNA 0.13 TCGA-SW-A7EA-01 14 29237056 29237056 A G FOXG1 Missense_Mutation p.M191V 0.21 deleterious(0.04) probably_damaging(0.928) TCGA-SW-A7EA-01 14 39868711 39868711 A - FBXO33 3'UTR 0.26 TCGA-SW-A7EA-01 14 47530566 47530566 A G MDGA2 Silent p.L471L 0.35 TCGA-SW-A7EA-01 14 50246976 50246976 A G KLHDC2 Silent p.L273L 0.32 TCGA-SW-A7EA-01 14 52433395 52433395 C T GNG2 Missense_Mutation p.A69V 0.21 tolerated(0.53) benign(0.006) TCGA-SW-A7EA-01 14 54996842 54996842 T C CGRRF1 Missense_Mutation p.L107S 0.27 deleterious(0) possibly_damaging(0.572) TCGA-SW-A7EA-01 14 55255768 55255768 T - SAMD4A 3'UTR 0.28 TCGA-SW-A7EA-01 14 55847308 55847308 G A ATG14 Silent p.P326P 0.38 TCGA-SW-A7EA-01 14 62242910 62242911 - T SNAPC1 Frame_Shift_Ins p.D214* 0.34 TCGA-SW-A7EA-01 14 64988813 64988813 C T ZBTB1 Silent p.S197S 0.31 TCGA-SW-A7EA-01 14 72925031 72925031 A G RGS6 Silent p.P96P 0.32 TCGA-SW-A7EA-01 14 74422589 74422589 G A COQ6 Missense_Mutation p.V147I 0.30 tolerated(0.15) benign(0.012) TCGA-SW-A7EA-01 14 75904683 75904683 C - JDP2 Frame_Shift_Del p.L33* 0.31 TCGA-SW-A7EA-01 14 77708808 77708808 A G TMEM63C Missense_Mutation p.I395V 0.40 tolerated(0.29) benign(0.118) TCGA-SW-A7EA-01 14 79111750 79111750 C T NRXN3 5'UTR 0.47 TCGA-SW-A7EA-01 14 88946485 88946485 G A PTPN21 Silent p.D430D 0.36 TCGA-SW-A7EA-01 14 91007800 91007800 G A TTC7B Missense_Mutation p.A815V 0.17 tolerated(0.16) benign(0.059) TCGA-SW-A7EA-01 14 91077134 91077134 G A TTC7B Nonsense_Mutation p.R640* 0.33 TCGA-SW-A7EA-01 14 93760638 93760638 T C BTBD7 Missense_Mutation p.Y243C 0.33 tolerated(0.13) benign(0.387) TCGA-SW-A7EA-01 15 25333956 25333956 G A SNORD116-20 RNA 0.33 TCGA-SW-A7EA-01 15 28171274 28171274 T C OCA2 Missense_Mutation p.E693G 0.24 deleterious(0.04) probably_damaging(0.99) TCGA-SW-A7EA-01 15 28903788 28903788 G A HERC2P9 RNA 0.56 TCGA-SW-A7EA-01 15 29346255 29346255 C T APBA2 Silent p.P56P 0.18 TCGA-SW-A7EA-01 15 29409285 29409285 C T APBA2 Silent p.P733P 0.23 TCGA-SW-A7EA-01 15 30010842 30010842 A G TJP1 Silent p.H1168H 0.40 TCGA-SW-A7EA-01 15 31251156 31251156 T C MTMR10 Splice_Site p.X283_splice 0.38 TCGA-SW-A7EA-01 15 40954502 40954502 A G CASC5 3'UTR 0.44 TCGA-SW-A7EA-01 15 42052726 42052726 G A MGA Missense_Mutation p.R2466Q 0.29 tolerated(1) benign(0.362) TCGA-SW-A7EA-01 15 42185453 42185453 C A SPTBN5 Intron 0.24 TCGA-SW-A7EA-01 15 43892280 43892280 G A STRC Missense_Mutation p.S1706F 0.31 deleterious(0.02) probably_damaging(0.998) TCGA-SW-A7EA-01 15 45413369 45413369 A G DUOXA1 Missense_Mutation p.S86P 0.33 tolerated(0.16) benign(0.082) TCGA-SW-A7EA-01 15 45460161 45460161 G A SHF Missense_Mutation p.A419V 0.26 tolerated(0.2) benign(0.407) TCGA-SW-A7EA-01 15 48755340 48755340 A G FBN1 Silent p.C1721C 0.34 TCGA-SW-A7EA-01 15 63966705 63966705 G A HERC1 Missense_Mutation p.A2561V 0.36 benign(0.223) TCGA-SW-A7EA-01 15 64966372 64966372 G A ZNF609 Missense_Mutation p.R440Q 0.41 deleterious(0) possibly_damaging(0.742) TCGA-SW-A7EA-01 15 64966970 64966970 A C ZNF609 Missense_Mutation p.K639N 0.29 deleterious(0.02) benign(0.002) TCGA-SW-A7EA-01 15 66206269 66206269 C T MEGF11 Missense_Mutation p.S839N 0.42 deleterious(0.02) probably_damaging(0.968) TCGA-SW-A7EA-01 15 68118278 68118278 G A SKOR1 Missense_Mutation p.G224S 0.32 deleterious_low_confidence(0.03) possibly_damaging(0.802) TCGA-SW-A7EA-01 15 74836637 74836637 A C ARID3B Missense_Mutation p.K120N 0.19 tolerated(0.09) probably_damaging(0.999) TCGA-SW-A7EA-01 15 75122526 75122526 G A CPLX3 Missense_Mutation p.R103Q 0.12 tolerated(0.29) benign(0.061) TCGA-SW-A7EA-01 15 75897504 75897505 - T SNUPN Frame_Shift_Ins p.T222Nfs*4 0.26 TCGA-SW-A7EA-01 15 75983101 75983101 G A CSPG4 Missense_Mutation p.T102M 0.33 tolerated(0.22) benign(0.017) TCGA-SW-A7EA-01 15 77473897 77473897 T G PEAK1 Missense_Mutation p.E124D 0.32 tolerated(0.27) possibly_damaging(0.61) TCGA-SW-A7EA-01 15 83679041 83679041 G A C15orf40 Silent p.C62C 0.33 TCGA-SW-A7EA-01 15 83932760 83932760 T C BNC1 Missense_Mutation p.M415V 0.31 deleterious(0) probably_damaging(0.977) TCGA-SW-A7EA-01 15 90171922 90171922 G - KIF7 Frame_Shift_Del p.L1254Sfs*22 0.35 TCGA-SW-A7EA-01 15 90190197 90190197 A G KIF7 Missense_Mutation p.L551P 0.29 tolerated(0.11) probably_damaging(0.998) TCGA-SW-A7EA-01 15 91009534 91009534 T C IQGAP1 Missense_Mutation p.V634A 0.35 deleterious(0.01) benign(0.074) TCGA-SW-A7EA-01 16 10912385 10912385 G - TVP23A 5'UTR 0.30 TCGA-SW-A7EA-01 16 11066812 11066812 C T CLEC16A Silent p.L208L 0.30 TCGA-SW-A7EA-01 16 16232251 16232251 C A ABCC1 Silent p.A1441A 0.26 TCGA-SW-A7EA-01 16 1820907 1820907 C T NME3 Missense_Mutation p.G123R 0.32 deleterious(0) probably_damaging(1) TCGA-SW-A7EA-01 16 19195003 19195003 A G SYT17 Missense_Mutation p.Y162C 0.33 deleterious(0.02) probably_damaging(0.998) TCGA-SW-A7EA-01 16 2097739 2097739 C T NTHL1 Missense_Mutation p.G37E 0.38 tolerated_low_confidence(0.23) benign(0) TCGA-SW-A7EA-01 16 21156687 21156687 C T DNAH3 Missense_Mutation p.R88H 0.34 tolerated_low_confidence(0.17) benign(0.001) TCGA-SW-A7EA-01 16 2155993 2155993 C T PKD1 Missense_Mutation p.G2579D 0.13 benign(0.219) TCGA-SW-A7EA-01 16 21817539 21817539 A G RRN3P1 RNA 0.31 TCGA-SW-A7EA-01 16 23692279 23692279 A G PLK1 Missense_Mutation p.K208E 0.36 deleterious(0.03) probably_damaging(0.996) TCGA-SW-A7EA-01 16 24372788 24372788 C T CACNG3 Silent p.F184F 0.30 TCGA-SW-A7EA-01 16 30035386 30035386 T G C16orf92 Missense_Mutation p.L119R 0.11 deleterious(0) probably_damaging(0.955) TCGA-SW-A7EA-01 16 30749860 30749860 G - SRCAP Frame_Shift_Del p.V2835* 0.25 TCGA-SW-A7EA-01 16 31198124 31198124 G A FUS Missense_Mutation p.G256R 0.32 tolerated(0.17) unknown(0) TCGA-SW-A7EA-01 16 3440105 3440105 A G ZSCAN32 Missense_Mutation p.V7A 0.13 tolerated_low_confidence(0.11) benign(0) TCGA-SW-A7EA-01 16 47156685 47156685 G A NETO2 Silent p.F179F 0.39 TCGA-SW-A7EA-01 16 53331043 53331043 A G CHD9 Missense_Mutation p.R1896G 0.35 probably_damaging(0.942) TCGA-SW-A7EA-01 16 58031334 58031334 G A ZNF319 Missense_Mutation p.A279V 0.22 tolerated(0.51) probably_damaging(0.998) TCGA-SW-A7EA-01 16 61687475 61687475 G A CDH8 3'UTR 0.27 TCGA-SW-A7EA-01 16 67221435 67221435 G A EXOC3L1 Missense_Mutation p.R245C 0.24 deleterious(0) probably_damaging(0.998) TCGA-SW-A7EA-01 16 68264452 68264452 G - ESRP2 Frame_Shift_Del p.P635Qfs*43 0.16 TCGA-SW-A7EA-01 16 68712089 68712089 G A CDH3 Missense_Mutation p.R100H 0.23 tolerated(0.42) benign(0.002) TCGA-SW-A7EA-01 16 75563578 75563578 C T CHST5 Silent p.A235A 0.08 TCGA-SW-A7EA-01 16 75611222 75611222 A C GABARAPL2 Silent p.G103G 0.27 TCGA-SW-A7EA-01 16 76495985 76495985 G A CNTNAP4 Missense_Mutation p.G416D 0.39 tolerated(1) benign(0.004) TCGA-SW-A7EA-01 16 77228375 77228375 G A MON1B Missense_Mutation p.A207T 0.40 tolerated(0.73) benign(0.014) TCGA-SW-A7EA-01 16 80718955 80718955 G A CDYL2 Silent p.Y32Y 0.37 TCGA-SW-A7EA-01 16 84229204 84229204 C T ADAD2 Missense_Mutation p.A400V 0.42 tolerated(0.21) benign(0.007) TCGA-SW-A7EA-01 16 84520430 84520430 G A TLDC1 Silent p.N255N 0.22 TCGA-SW-A7EA-01 16 87364951 87364951 C T FBXO31 Silent p.A521A 0.36 TCGA-SW-A7EA-01 16 89351056 89351057 - T ANKRD11 Frame_Shift_Ins p.H632Tfs*2 0.23 TCGA-SW-A7EA-01 16 90001516 90001516 G A TUBB3 Silent p.T219T 0.39 TCGA-SW-A7EA-01 17 1549609 1549609 G A RILP 3'UTR 0.56 TCGA-SW-A7EA-01 17 15643630 15643630 C A TBC1D26 Intron 0.33 TCGA-SW-A7EA-01 17 15971253 15971254 - G NCOR1 Frame_Shift_Ins p.T1566Hfs*51 0.20 TCGA-SW-A7EA-01 17 16725685 16725685 C T AC022596.6 RNA 0.53 TCGA-SW-A7EA-01 17 18137611 18137611 C T LLGL1 Missense_Mutation p.R247C 0.33 deleterious(0) possibly_damaging(0.836) TCGA-SW-A7EA-01 17 18232626 18232626 T C SHMT1 Silent p.K416K 0.25 TCGA-SW-A7EA-01 17 21731394 21731394 G A UBBP4 Intron 0.27 TCGA-SW-A7EA-01 17 26656207 26656207 C T IFT20 Silent p.Q129Q 0.19 TCGA-SW-A7EA-01 17 27024095 27024095 A G SUPT6H Missense_Mutation p.S1402G 0.38 tolerated(0.24) benign(0.002) TCGA-SW-A7EA-01 17 27041546 27041546 G A RAB34 3'UTR 0.19 TCGA-SW-A7EA-01 17 27239800 27239800 T C PHF12 Missense_Mutation p.T597A 0.22 tolerated(0.52) benign(0.026) TCGA-SW-A7EA-01 17 27417091 27417091 T C MYO18A Missense_Mutation p.E1805G 0.30 deleterious(0) possibly_damaging(0.755) TCGA-SW-A7EA-01 17 33446676 33446676 G - RAD51D 5'UTR 0.31 TCGA-SW-A7EA-01 17 36002277 36002278 - A DDX52 Frame_Shift_Ins p.G50Wfs*31 0.26 TCGA-SW-A7EA-01 17 36485569 36485569 C T GPR179 Missense_Mutation p.G1295R 0.22 tolerated(0.35) benign(0.005) TCGA-SW-A7EA-01 17 37786261 37786261 A G PPP1R1B Missense_Mutation p.R68G 0.24 deleterious(0) probably_damaging(0.999) TCGA-SW-A7EA-01 17 42635950 42635950 C T FZD2 Silent p.F298F 0.30 TCGA-SW-A7EA-01 17 43102057 43102057 C T DCAKD Missense_Mutation p.R147Q 0.24 deleterious(0) probably_damaging(1) TCGA-SW-A7EA-01 17 43227397 43227397 G A HEXIM1 Silent p.Q280Q 0.41 TCGA-SW-A7EA-01 17 43227526 43227531 GGAGCT - HEXIM1 In_Frame_Del p.E328_L329del 0.29 TCGA-SW-A7EA-01 17 4416604 4416604 T C SPNS2 Missense_Mutation p.S145P 0.38 deleterious(0.03) benign(0.002) TCGA-SW-A7EA-01 17 50235203 50235203 G A CA10 5'UTR 0.08 TCGA-SW-A7EA-01 17 56280560 56280560 T C EPX Silent p.P609P 0.08 TCGA-SW-A7EA-01 17 56329565 56329565 C T LPO Missense_Mutation p.A268V 0.23 tolerated(0.23) benign(0) TCGA-SW-A7EA-01 17 56382476 56382476 C T BZRAP1 Silent p.G1830G 0.31 TCGA-SW-A7EA-01 17 56435161 56435161 C - RNF43 Frame_Shift_Del p.G659Vfs*41 0.15 TCGA-SW-A7EA-01 17 58149610 58149610 T G HEATR6 Missense_Mutation p.K222T 0.33 deleterious(0) possibly_damaging(0.663) TCGA-SW-A7EA-01 17 61901269 61901269 G A FTSJ3 Missense_Mutation p.R400C 0.30 deleterious(0) probably_damaging(1) TCGA-SW-A7EA-01 17 6375998 6375998 C T PITPNM3 Missense_Mutation p.D470N 0.40 tolerated(0.15) probably_damaging(0.925) TCGA-SW-A7EA-01 17 64800155 64800155 A G PRKCA Nonstop_Mutation p.*673Wext*20 0.32 TCGA-SW-A7EA-01 17 66265437 66265437 C T SLC16A6 Missense_Mutation p.A458T 0.14 tolerated(0.07) possibly_damaging(0.801) TCGA-SW-A7EA-01 17 6674068 6674068 C T XAF1 Missense_Mutation p.T205M 0.30 deleterious(0.04) benign(0.178) TCGA-SW-A7EA-01 17 67047198 67047199 - T ABCA9 Frame_Shift_Ins p.W24Mfs*33 0.14 TCGA-SW-A7EA-01 17 68171653 68171653 T C KCNJ2 Missense_Mutation p.V158A 0.34 deleterious(0) probably_damaging(0.973) TCGA-SW-A7EA-01 17 71281908 71281908 G A CDC42EP4 Silent p.G244G 0.25 TCGA-SW-A7EA-01 17 71282390 71282390 G A CDC42EP4 Missense_Mutation p.R84W 0.30 deleterious(0.01) benign(0.104) TCGA-SW-A7EA-01 17 71389698 71389698 C A SDK2 Splice_Site p.X1300_splice 0.42 TCGA-SW-A7EA-01 17 72436022 72436023 - C GPRC5C Frame_Shift_Ins p.L83Pfs*7 0.33 TCGA-SW-A7EA-01 17 72477461 72477461 A C CD300A Missense_Mutation p.K221T 0.41 tolerated(0.6) benign(0.004) TCGA-SW-A7EA-01 17 72767908 72767908 G A NAT9 Silent p.H193H 0.29 TCGA-SW-A7EA-01 17 7286790 7286790 C T TNK1 Missense_Mutation p.S94L 0.27 tolerated(0.15) benign(0.116) TCGA-SW-A7EA-01 17 73498257 73498257 G A CASKIN2 Silent p.P966P 0.28 TCGA-SW-A7EA-01 17 76178712 76178712 C T TK1 Silent p.E87E 0.36 TCGA-SW-A7EA-01 17 7689440 7689440 A G DNAH2 Splice_Site p.X2044_splice 0.35 TCGA-SW-A7EA-01 17 7707737 7707737 C T DNAH2 Silent p.L3046L 0.44 TCGA-SW-A7EA-01 17 7722600 7722600 T C DNAH2 Missense_Mutation p.M3630T 0.36 probably_damaging(0.978) TCGA-SW-A7EA-01 17 78321995 78321995 A G RNF213 Missense_Mutation p.Y3287C 0.31 probably_damaging(0.999) TCGA-SW-A7EA-01 17 80865646 80865646 G A TBCD Silent p.T644T 0.20 TCGA-SW-A7EA-01 17 8243503 8243503 T C ODF4 Missense_Mutation p.L45P 0.40 tolerated(0.16) possibly_damaging(0.483) TCGA-SW-A7EA-01 18 10487787 10487787 G T APCDD1 Missense_Mutation p.G433W 0.32 deleterious(0) probably_damaging(0.996) TCGA-SW-A7EA-01 18 13055986 13055986 G C CEP192 Missense_Mutation p.D1133H 0.25 tolerated(0.15) benign(0.004) TCGA-SW-A7EA-01 18 20572853 20572853 A - RBBP8 Frame_Shift_Del p.K357Nfs*3 0.34 TCGA-SW-A7EA-01 18 23915191 23915191 A G TAF4B Missense_Mutation p.K771R 0.35 deleterious(0.01) probably_damaging(0.936) TCGA-SW-A7EA-01 18 31537451 31537451 A C NOL4 Missense_Mutation p.L423V 0.41 deleterious(0) probably_damaging(0.99) TCGA-SW-A7EA-01 18 3168966 3168967 - G MYOM1 Frame_Shift_Ins p.Y397Ifs*8 0.23 TCGA-SW-A7EA-01 18 34205516 34205516 C - FHOD3 Frame_Shift_Del p.S336Vfs*138 0.25 TCGA-SW-A7EA-01 18 47769415 47769415 C A CCDC11 Missense_Mutation p.Q356H 0.21 tolerated(0.13) benign(0.037) TCGA-SW-A7EA-01 18 55274524 55274524 A G NARS Silent p.G281G 0.29 TCGA-SW-A7EA-01 18 5960137 5960137 A G L3MBTL4 Missense_Mutation p.S554P 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-SW-A7EA-01 18 6243371 6243371 A - L3MBTL4 Frame_Shift_Del p.W128Gfs*12 0.08 TCGA-SW-A7EA-01 18 72776160 72776160 C T ZNF407 Silent p.G2161G 0.46 TCGA-SW-A7EA-01 18 77659467 77659467 G A KCNG2 Missense_Mutation p.R351H 0.43 tolerated(0.25) benign(0.016) TCGA-SW-A7EA-01 18 9257340 9257340 C T ANKRD12 Missense_Mutation p.L1359F 0.27 tolerated_low_confidence(0.62) benign(0.001) TCGA-SW-A7EA-01 19 1108860 1108860 G A SBNO2 Silent p.I1178I 0.38 TCGA-SW-A7EA-01 19 11216146 11216146 C T LDLR Silent p.Y188Y 0.23 TCGA-SW-A7EA-01 19 14199996 14199996 T C SAMD1 Missense_Mutation p.K272R 0.27 tolerated(0.13) benign(0.038) TCGA-SW-A7EA-01 19 1788970 1788970 A G ATP8B3 Missense_Mutation p.Y999H 0.38 deleterious(0.02) benign(0.112) TCGA-SW-A7EA-01 19 18054453 18054455 AAG - CCDC124 In_Frame_Del p.K202del 0.32 TCGA-SW-A7EA-01 19 18120717 18120717 G A ARRDC2 Missense_Mutation p.V240M 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-SW-A7EA-01 19 19753372 19753372 C A GMIP Missense_Mutation p.D26Y 0.33 deleterious(0) probably_damaging(1) TCGA-SW-A7EA-01 19 22155549 22155549 T C ZNF208 Missense_Mutation p.T763A 0.19 tolerated(0.86) benign(0) TCGA-SW-A7EA-01 19 2217874 2217874 T C DOT1L Missense_Mutation p.I883T 0.28 deleterious_low_confidence(0.02) benign(0.004) TCGA-SW-A7EA-01 19 23456919 23456919 G A RP11-15H20.7 RNA 0.43 TCGA-SW-A7EA-01 19 2917858 2917858 G A ZNF57 Silent p.T413T 0.29 TCGA-SW-A7EA-01 19 29699002 29699002 C T UQCRFS1 Missense_Mutation p.R93H 0.09 tolerated(0.08) probably_damaging(0.998) TCGA-SW-A7EA-01 19 30193879 30193879 C - C19orf12 Frame_Shift_Del p.A67Lfs*6 0.28 TCGA-SW-A7EA-01 19 30502026 30502026 C T URI1 Missense_Mutation p.T354I 0.33 tolerated(0.05) probably_damaging(0.999) TCGA-SW-A7EA-01 19 33140670 33140670 G T ANKRD27 Nonsense_Mutation p.S44* 0.36 TCGA-SW-A7EA-01 19 35449059 35449059 C T ZNF792 Missense_Mutation p.C567Y 0.24 deleterious(0) probably_damaging(0.999) TCGA-SW-A7EA-01 19 35786566 35786566 T C MAG Missense_Mutation p.F33L 0.38 tolerated(0.41) benign(0.078) TCGA-SW-A7EA-01 19 36219906 36219906 G A KMT2B Missense_Mutation p.A1570T 0.46 benign(0.014) TCGA-SW-A7EA-01 19 36673884 36673884 G A ZNF565 Silent p.I328I 0.41 TCGA-SW-A7EA-01 19 37441513 37441513 G T ZNF568 Missense_Mutation p.M486I 0.32 tolerated(0.48) benign(0.297) TCGA-SW-A7EA-01 19 39078375 39078375 C - MAP4K1 3'UTR 0.28 TCGA-SW-A7EA-01 19 39694552 39694552 G A SYCN Missense_Mutation p.R115C 0.14 deleterious(0) probably_damaging(0.999) TCGA-SW-A7EA-01 19 39798459 39798459 G A LRFN1 Silent p.Y710Y 0.37 TCGA-SW-A7EA-01 19 40900550 40900550 C T PRX Missense_Mutation p.A1237T 0.34 tolerated(0.06) possibly_damaging(0.682) TCGA-SW-A7EA-01 19 42603760 42603760 C T POU2F2 Silent p.P140P 0.21 TCGA-SW-A7EA-01 19 42753821 42753821 G A ERF Missense_Mutation p.T148M 0.36 deleterious(0.04) probably_damaging(0.925) TCGA-SW-A7EA-01 19 45028197 45028197 G T CEACAM20 RNA 0.33 TCGA-SW-A7EA-01 19 46094647 46094647 G A GPR4 Nonsense_Mutation p.R160* 0.27 TCGA-SW-A7EA-01 19 46289555 46289555 T G DMWD Missense_Mutation p.E400A 0.18 tolerated(0.17) benign(0.169) TCGA-SW-A7EA-01 19 46328454 46328454 G A SYMPK Missense_Mutation p.T822M 0.29 deleterious(0.01) probably_damaging(0.924) TCGA-SW-A7EA-01 19 47910638 47910638 C T MEIS3 Silent p.T348T 0.26 TCGA-SW-A7EA-01 19 49000699 49000699 T C LMTK3 Silent p.R1238R 0.47 TCGA-SW-A7EA-01 19 50215096 50215096 G A CPT1C Missense_Mutation p.A633T 0.48 deleterious(0) probably_damaging(1) TCGA-SW-A7EA-01 19 52619205 52619205 A G ZNF616 Silent p.T404T 0.32 TCGA-SW-A7EA-01 19 53208434 53208434 T C ZNF611 Missense_Mutation p.N625S 0.32 tolerated(0.12) probably_damaging(0.996) TCGA-SW-A7EA-01 19 56466477 56466477 C T NLRP8 Silent p.L351L 0.32 TCGA-SW-A7EA-01 19 57325987 57325987 T G PEG3 Missense_Mutation p.S1275R 0.38 tolerated(0.11) possibly_damaging(0.864) TCGA-SW-A7EA-01 19 58038866 58038866 C T ZNF549 5'UTR 0.36 TCGA-SW-A7EA-01 19 58565040 58565040 C T ZSCAN1 Missense_Mutation p.P283L 0.53 tolerated(0.24) benign(0.001) TCGA-SW-A7EA-01 19 6361916 6361916 C T CLPP Silent p.L79L 0.64 TCGA-SW-A7EA-01 19 6429780 6429780 G A SLC25A41 Silent p.G193G 0.29 TCGA-SW-A7EA-01 19 6454050 6454050 C T SLC25A23 Missense_Mutation p.R282H 0.25 deleterious(0) probably_damaging(0.982) TCGA-SW-A7EA-01 19 6697423 6697423 C T C3 Missense_Mutation p.V910M 0.26 deleterious(0.02) possibly_damaging(0.656) TCGA-SW-A7EA-01 19 7117215 7117215 T C INSR Missense_Mutation p.H1334R 0.24 tolerated(0.35) benign(0.122) TCGA-SW-A7EA-01 19 7166172 7166175 ATCT - INSR Frame_Shift_Del p.D618Pfs*22 0.29 TCGA-SW-A7EA-01 19 8130707 8130707 T C FBN3 3'UTR 0.46 TCGA-SW-A7EA-01 19 868170 868170 C T MED16 Silent p.P855P 0.35 TCGA-SW-A7EA-01 19 891109 891109 G A MED16 Missense_Mutation p.A8V 0.35 tolerated_low_confidence(0.06) possibly_damaging(0.499) TCGA-SW-A7EA-01 1 100477012 100477012 G T SLC35A3 Missense_Mutation p.S186I 0.14 deleterious(0.02) probably_damaging(0.941) TCGA-SW-A7EA-01 1 100750859 100750859 A G RTCA Missense_Mutation p.D305G 0.22 deleterious(0) probably_damaging(0.999) TCGA-SW-A7EA-01 1 101705754 101705754 A - S1PR1 3'UTR 0.40 TCGA-SW-A7EA-01 1 108700183 108700183 T - SLC25A24 Frame_Shift_Del p.K190Nfs*29 0.34 TCGA-SW-A7EA-01 1 11116779 11116779 G A SRM Silent p.G139G 0.30 TCGA-SW-A7EA-01 1 116936320 116936320 G - ATP1A1 Frame_Shift_Del p.G547Afs*7 0.19 TCGA-SW-A7EA-01 1 117122237 117122237 G A IGSF3 Silent p.G1057G 0.25 TCGA-SW-A7EA-01 1 117156603 117156603 A G IGSF3 Missense_Mutation p.S206P 0.27 tolerated(0.51) benign(0.002) TCGA-SW-A7EA-01 1 120611955 120611955 G - NOTCH2 Frame_Shift_Del p.A23Rfs*14 0.38 TCGA-SW-A7EA-01 1 12638830 12638830 C T DHRS3 Missense_Mutation p.G205E 0.32 tolerated(1) benign(0.165) TCGA-SW-A7EA-01 1 1290267 1290267 A G MXRA8 Silent p.D248D 0.46 TCGA-SW-A7EA-01 1 13940907 13940907 G A PDPN Splice_Site p.X237_splice 0.29 TCGA-SW-A7EA-01 1 144879327 144879327 G T PDE4DIP Missense_Mutation p.L1375I 0.16 deleterious(0) probably_damaging(0.999) TCGA-SW-A7EA-01 1 147230644 147230644 T C GJA5 Missense_Mutation p.R235G 0.39 deleterious(0.02) benign(0.013) TCGA-SW-A7EA-01 1 14925622 14925622 C T KAZN Silent p.G43G 0.53 TCGA-SW-A7EA-01 1 149897739 149897739 A G SF3B4 Missense_Mutation p.M301T 0.32 tolerated(0.1) unknown(0) TCGA-SW-A7EA-01 1 152280628 152280628 T C FLG Missense_Mutation p.Q2245R 0.03 benign(0.227) TCGA-SW-A7EA-01 1 152733155 152733155 G T KPRP Missense_Mutation p.G364V 0.37 deleterious(0.01) probably_damaging(0.988) TCGA-SW-A7EA-01 1 152733604 152733604 G T KPRP Missense_Mutation p.G514C 0.30 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-SW-A7EA-01 1 154321529 154321529 C T ATP8B2 Missense_Mutation p.R1203C 0.39 tolerated(0.19) unknown(0) TCGA-SW-A7EA-01 1 154998825 154998825 G A DCST2 Missense_Mutation p.R522W 0.32 deleterious(0) probably_damaging(1) TCGA-SW-A7EA-01 1 155152179 155152179 C - TRIM46 Frame_Shift_Del p.H455Ifs*32 0.29 TCGA-SW-A7EA-01 1 156236110 156236112 AGG - SMG5 In_Frame_Del p.P439del 0.25 TCGA-SW-A7EA-01 1 156503912 156503912 G A IQGAP3 Silent p.C1254C 0.22 TCGA-SW-A7EA-01 1 158669740 158669740 G A OR6K2 Missense_Mutation p.R235C 0.32 deleterious(0.01) benign(0.365) TCGA-SW-A7EA-01 1 161090352 161090352 C T NIT1 Missense_Mutation p.R261C 0.31 tolerated(0.21) benign(0.001) TCGA-SW-A7EA-01 1 161953998 161953998 C T OLFML2B Missense_Mutation p.A574T 0.37 deleterious(0) benign(0.204) TCGA-SW-A7EA-01 1 162336977 162336977 C A RP11-565P22.6 Missense_Mutation p.P100H 0.40 tolerated(0.18) benign(0.009) TCGA-SW-A7EA-01 1 16235913 16235914 - A SPEN Frame_Shift_Ins p.D329Rfs*2 0.08 TCGA-SW-A7EA-01 1 165218837 165218837 C T LMX1A Missense_Mutation p.A102T 0.41 tolerated(0.14) possibly_damaging(0.474) TCGA-SW-A7EA-01 1 171061921 171061921 G T FMO3 Missense_Mutation p.W41L 0.40 deleterious(0) probably_damaging(0.98) TCGA-SW-A7EA-01 1 17322403 17322403 T C ATP13A2 Intron 0.21 TCGA-SW-A7EA-01 1 176526282 176526282 G A PAPPA2 Missense_Mutation p.R275H 0.32 tolerated(0.07) benign(0.235) TCGA-SW-A7EA-01 1 177242646 177242646 C A BRINP2 Missense_Mutation p.P231H 0.31 deleterious(0) probably_damaging(0.998) TCGA-SW-A7EA-01 1 179077318 179077318 G A ABL2 Silent p.G1028G 0.29 TCGA-SW-A7EA-01 1 179316757 179316757 T - SOAT1 Frame_Shift_Del p.F382Lfs*69 0.27 TCGA-SW-A7EA-01 1 183511569 183511569 A G SMG7 Intron 0.36 TCGA-SW-A7EA-01 1 186340109 186340109 G A TPR Missense_Mutation p.A108V 0.26 benign(0.001) TCGA-SW-A7EA-01 1 192335062 192335062 C T RGS21 Silent p.D89D 0.34 TCGA-SW-A7EA-01 1 193065778 193065778 T - GLRX2 Frame_Shift_Del p.S159Vfs*22 0.27 TCGA-SW-A7EA-01 1 204924033 204924033 C - NFASC Frame_Shift_Del p.P165Rfs*12 0.22 TCGA-SW-A7EA-01 1 205632684 205632684 G A SLC45A3 Missense_Mutation p.R79C 0.30 tolerated(0.08) possibly_damaging(0.788) TCGA-SW-A7EA-01 1 207235990 207235990 T C PFKFB2 Silent p.R79R 0.27 TCGA-SW-A7EA-01 1 20827645 20827645 G A MUL1 Silent p.G199G 0.35 TCGA-SW-A7EA-01 1 210857289 210857289 C G KCNH1 Missense_Mutation p.K768N 0.29 deleterious(0.05) benign(0.006) TCGA-SW-A7EA-01 1 211307316 211307316 G A KCNH1 5'Flank 0.47 TCGA-SW-A7EA-01 1 211433479 211433479 C T RCOR3 Nonsense_Mutation p.Q66* 0.28 TCGA-SW-A7EA-01 1 216591920 216591920 G A USH2A Missense_Mutation p.P196L 0.32 benign(0.049) TCGA-SW-A7EA-01 1 220284281 220284281 T C IARS2 Splice_Site p.X493_splice 0.35 TCGA-SW-A7EA-01 1 222801059 222801059 A - MIA3 Frame_Shift_Del p.N168Tfs*15 0.27 TCGA-SW-A7EA-01 1 222838880 222838880 G A MIA3 Silent p.P1881P 0.28 TCGA-SW-A7EA-01 1 224586736 224586736 C T WDR26 Missense_Mutation p.D474N 0.21 tolerated(0.11) benign(0.109) TCGA-SW-A7EA-01 1 227068362 227068362 G A PSEN2 Intron 0.31 TCGA-SW-A7EA-01 1 227222417 227222417 C T CDC42BPA Missense_Mutation p.D1104N 0.29 deleterious(0) possibly_damaging(0.643) TCGA-SW-A7EA-01 1 228466533 228466533 T C OBSCN Missense_Mutation p.Y2764H 0.15 possibly_damaging(0.509) TCGA-SW-A7EA-01 1 229460857 229460857 A - CCSAP 3'UTR 0.56 TCGA-SW-A7EA-01 1 230371813 230371813 C T GALNT2 Missense_Mutation p.T143M 0.33 deleterious(0) probably_damaging(0.997) TCGA-SW-A7EA-01 1 231096989 231096989 T A TTC13 Missense_Mutation p.D111V 0.33 deleterious_low_confidence(0.05) benign(0.171) TCGA-SW-A7EA-01 1 2338295 2338295 G A PEX10 Missense_Mutation p.R234C 0.40 deleterious(0) benign(0.108) TCGA-SW-A7EA-01 1 235878512 235878512 A - LYST Frame_Shift_Del p.L3258* 0.24 TCGA-SW-A7EA-01 1 236902765 236902765 C T ACTN2 Missense_Mutation p.T347M 0.38 deleterious(0) probably_damaging(0.941) TCGA-SW-A7EA-01 1 236908064 236908064 C T ACTN2 Missense_Mutation p.A465V 0.42 deleterious(0.03) probably_damaging(0.92) TCGA-SW-A7EA-01 1 236958928 236958928 G A MTR 5'UTR 0.22 TCGA-SW-A7EA-01 1 24125135 24125135 G A GALE Silent p.D69D 0.25 TCGA-SW-A7EA-01 1 241753557 241753558 - A KMO Frame_Shift_Ins p.V421Gfs*65 0.20 TCGA-SW-A7EA-01 1 243362382 243362382 T - CEP170 Frame_Shift_Del p.N204Tfs*11 0.16 TCGA-SW-A7EA-01 1 248685614 248685614 C G OR2G6 Missense_Mutation p.Q223E 0.28 deleterious(0.01) benign(0.052) TCGA-SW-A7EA-01 1 27059167 27059167 G T ARID1A Nonsense_Mutation p.E602* 0.31 TCGA-SW-A7EA-01 1 3551750 3551750 G - WRAP73 Frame_Shift_Del p.L238Wfs*16 0.28 TCGA-SW-A7EA-01 1 37319219 37319219 C T GRIK3 Silent p.E403E 0.25 TCGA-SW-A7EA-01 1 39876971 39876971 A - KIAA0754 Frame_Shift_Del p.K210Rfs*4 0.15 TCGA-SW-A7EA-01 1 41463073 41463073 C T CTPS1 Missense_Mutation p.R294C 0.35 deleterious(0.03) benign(0.001) TCGA-SW-A7EA-01 1 47101516 47101516 T C ATPAF1 Missense_Mutation p.I330V 0.34 tolerated(0.08) benign(0.44) TCGA-SW-A7EA-01 1 52991928 52991928 T - ZCCHC11 Frame_Shift_Del p.S9Vfs*21 0.21 TCGA-SW-A7EA-01 1 55279566 55279566 T - C1orf177 Frame_Shift_Del p.S283Lfs*51 0.19 TCGA-SW-A7EA-01 1 57340751 57340751 C T C8A Nonsense_Mutation p.Q101* 0.26 TCGA-SW-A7EA-01 1 62740528 62740528 G - KANK4 Frame_Shift_Del p.P83Lfs*43 0.30 TCGA-SW-A7EA-01 1 6324709 6324709 C T ACOT7 Missense_Mutation p.R364Q 0.35 deleterious(0) possibly_damaging(0.823) TCGA-SW-A7EA-01 1 68171151 68171151 T - GNG12 Frame_Shift_Del p.T68Lfs*22 0.18 TCGA-SW-A7EA-01 1 84647913 84647913 A - PRKACB Frame_Shift_Del p.T96Pfs*13 0.32 TCGA-SW-A7EA-01 1 89270104 89270104 C T PKN2 Missense_Mutation p.R438C 0.43 deleterious(0) probably_damaging(0.993) TCGA-SW-A7EA-01 1 89732166 89732166 T - GBP5 Frame_Shift_Del p.K244Sfs*13 0.25 TCGA-SW-A7EA-01 1 90478763 90478763 A - ZNF326 Frame_Shift_Del p.N300Tfs*41 0.24 TCGA-SW-A7EA-01 1 94640231 94640231 G A ARHGAP29 Missense_Mutation p.P994S 0.28 tolerated(0.85) benign(0.075) TCGA-SW-A7EA-01 1 97770821 97770821 C T DPYD Missense_Mutation p.V765M 0.37 tolerated(0.26) benign(0.073) TCGA-SW-A7EA-01 20 13415772 13415772 C T TASP1 Missense_Mutation p.V339M 0.39 tolerated(0.13) possibly_damaging(0.671) TCGA-SW-A7EA-01 20 16348120 16348120 A - KIF16B Frame_Shift_Del p.Y1284Ifs*18 0.17 TCGA-SW-A7EA-01 20 17640852 17640852 G A RRBP1 Missense_Mutation p.R101W 0.39 deleterious(0.03) possibly_damaging(0.835) TCGA-SW-A7EA-01 20 25187923 25187924 - C ENTPD6 Frame_Shift_Ins p.L91Pfs*17 0.29 TCGA-SW-A7EA-01 20 25462613 25462613 C T NINL Missense_Mutation p.G601S 0.30 tolerated(0.31) benign(0.006) TCGA-SW-A7EA-01 20 25657029 25657029 G A ZNF337 Nonsense_Mutation p.R299* 0.10 TCGA-SW-A7EA-01 20 30370128 30370128 T C TPX2 Silent p.R377R 0.30 TCGA-SW-A7EA-01 20 3209826 3209827 - ACCG SLC4A11 Frame_Shift_Ins p.A688Rfs*87 0.38 TCGA-SW-A7EA-01 20 33508905 33508905 C T ACSS2 Missense_Mutation p.R427C 0.30 deleterious(0) probably_damaging(1) TCGA-SW-A7EA-01 20 34241895 34241895 A - RBM12 Frame_Shift_Del p.F450Lfs*13 0.25 TCGA-SW-A7EA-01 20 3734738 3734738 G A C20orf27 Silent p.D189D 0.33 TCGA-SW-A7EA-01 20 44569841 44569841 G A PCIF1 Missense_Mutation p.R223Q 0.28 deleterious(0) probably_damaging(0.963) TCGA-SW-A7EA-01 20 46264296 46264296 T C NCOA3 Missense_Mutation p.M448T 0.35 deleterious(0.01) benign(0.04) TCGA-SW-A7EA-01 20 47700644 47700644 G A CSE1L Missense_Mutation p.A522T 0.26 deleterious(0.01) probably_damaging(0.959) TCGA-SW-A7EA-01 20 47990120 47990120 A G KCNB1 Silent p.S659S 0.35 TCGA-SW-A7EA-01 20 51871054 51871054 C T TSHZ2 Nonsense_Mutation p.Q353* 0.25 TCGA-SW-A7EA-01 20 55206462 55206462 G A TFAP2C Missense_Mutation p.A84T 0.56 tolerated(0.16) benign(0.122) TCGA-SW-A7EA-01 20 57415654 57415654 G A RP4-806M20.3 5'Flank 0.38 TCGA-SW-A7EA-01 20 60885270 60885270 C T LAMA5 Silent p.T3566T 0.24 TCGA-SW-A7EA-01 20 62292799 62292799 G A RTEL1 Missense_Mutation p.R84Q 0.22 tolerated(0.46) benign(0.003) TCGA-SW-A7EA-01 20 62407296 62407296 G A ZBTB46 Silent p.T319T 0.26 TCGA-SW-A7EA-01 21 33642777 33642777 C T MIS18A Silent p.T155T 0.26 TCGA-SW-A7EA-01 21 34924270 34924270 T G SON Silent p.P911P 0.43 TCGA-SW-A7EA-01 21 43413803 43413803 T - ZBTB21 Frame_Shift_Del p.V135Cfs*3 0.18 TCGA-SW-A7EA-01 21 44514593 44514593 C T U2AF1 Missense_Mutation p.R188H 0.16 tolerated(0.07) unknown(0) TCGA-SW-A7EA-01 21 46281076 46281076 A G PTTG1IP Splice_Site p.X93_splice 0.24 TCGA-SW-A7EA-01 21 47552287 47552287 G A COL6A2 Missense_Mutation p.A961T 0.24 deleterious(0.03) benign(0.006) TCGA-SW-A7EA-01 22 18301788 18301788 G - MICAL3 Frame_Shift_Del p.S1214Rfs*3 0.15 TCGA-SW-A7EA-01 22 19170946 19170946 G A CLTCL1 Missense_Mutation p.A1595V 0.39 tolerated(0.28) possibly_damaging(0.743) TCGA-SW-A7EA-01 22 20918765 20918767 GCA - MED15 In_Frame_Del p.Q168del 0.24 TCGA-SW-A7EA-01 22 24622164 24622165 - C GGT5 Frame_Shift_Ins p.D370Gfs*144 0.27 TCGA-SW-A7EA-01 22 24909359 24909359 T - UPB1 Frame_Shift_Del p.L177Cfs*7 0.23 TCGA-SW-A7EA-01 22 25315860 25315860 G A SGSM1 Silent p.A1086A 0.40 TCGA-SW-A7EA-01 22 26688839 26688839 C T SEZ6L Nonsense_Mutation p.R188* 0.27 TCGA-SW-A7EA-01 22 29754933 29754933 G A AP1B1 Nonsense_Mutation p.R103* 0.33 TCGA-SW-A7EA-01 22 32010836 32010836 C T SFI1 Nonsense_Mutation p.Q1020* 0.27 TCGA-SW-A7EA-01 22 32108311 32108311 T - PRR14L Frame_Shift_Del p.K1838Nfs*16 0.21 TCGA-SW-A7EA-01 22 32650150 32650150 A G SLC5A4 Silent p.G62G 0.39 TCGA-SW-A7EA-01 22 37271972 37271972 A G NCF4 Missense_Mutation p.Q302R 0.16 deleterious_low_confidence(0) benign(0.069) TCGA-SW-A7EA-01 22 37771536 37771536 G A ELFN2 Silent p.C13C 0.36 TCGA-SW-A7EA-01 22 38041398 38041398 C T SH3BP1 Missense_Mutation p.H269Y 0.29 tolerated(0.06) benign(0.005) TCGA-SW-A7EA-01 22 38227913 38227913 G A ANKRD54 3'UTR 0.38 TCGA-SW-A7EA-01 22 40660882 40660882 C T TNRC6B Silent p.T216T 0.23 TCGA-SW-A7EA-01 22 40859311 40859311 A G MKL1 Intron 0.22 TCGA-SW-A7EA-01 22 41077263 41077263 C A MCHR1 Silent p.T200T 0.27 TCGA-SW-A7EA-01 22 41568501 41568501 A G EP300 Splice_Site p.X1485_splice 0.26 TCGA-SW-A7EA-01 22 41973418 41973418 G T CSDC2 3'Flank 0.41 TCGA-SW-A7EA-01 22 42377814 42377814 G A SEPT3 Missense_Mutation p.G59D 0.18 deleterious(0) probably_damaging(1) TCGA-SW-A7EA-01 2 100007095 100007095 G T EIF5B Missense_Mutation p.G892V 0.27 probably_damaging(0.998) TCGA-SW-A7EA-01 2 10105453 10105453 C T GRHL1 Silent p.I351I 0.20 TCGA-SW-A7EA-01 2 106710415 106710415 A - UXS1 3'UTR 0.50 TCGA-SW-A7EA-01 2 110373291 110373291 G A SOWAHC Missense_Mutation p.G409S 0.13 tolerated(0.21) possibly_damaging(0.676) TCGA-SW-A7EA-01 2 119699942 119699942 C T MARCO Silent p.H22H 0.14 TCGA-SW-A7EA-01 2 128409083 128409083 C T GPR17 Silent p.Y286Y 0.35 TCGA-SW-A7EA-01 2 130897505 130897505 C T CCDC74B Silent p.T322T 0.23 TCGA-SW-A7EA-01 2 130930875 130930875 C T SMPD4 Missense_Mutation p.D147N 0.34 deleterious(0) probably_damaging(0.913) TCGA-SW-A7EA-01 2 131797694 131797694 C T ARHGEF4 Missense_Mutation p.R285W 0.35 deleterious(0) probably_damaging(0.999) TCGA-SW-A7EA-01 2 132290601 132290601 G A CCDC74A Silent p.T322T 0.12 TCGA-SW-A7EA-01 2 133489456 133489456 G A NCKAP5 Missense_Mutation p.A1766V 0.24 tolerated(0.05) probably_damaging(0.999) TCGA-SW-A7EA-01 2 133542575 133542575 G T NCKAP5 Missense_Mutation p.D603E 0.26 tolerated(0.21) benign(0.089) TCGA-SW-A7EA-01 2 141032033 141032034 - C LRP1B Frame_Shift_Ins p.H4368Afs*6 0.27 TCGA-SW-A7EA-01 2 141819702 141819702 T A LRP1B Missense_Mutation p.Y385F 0.33 benign(0.418) TCGA-SW-A7EA-01 2 148683686 148683686 A - ACVR2A Frame_Shift_Del p.K437Rfs*5 0.09 TCGA-SW-A7EA-01 2 1507768 1507768 C T TPO Missense_Mutation p.A812V 0.18 deleterious(0.01) probably_damaging(0.985) TCGA-SW-A7EA-01 2 152342159 152342159 T C NEB 3'UTR 0.40 TCGA-SW-A7EA-01 2 155555857 155555857 C T KCNJ3 Silent p.R190R 0.22 TCGA-SW-A7EA-01 2 15618356 15618356 T - NBAS Frame_Shift_Del p.I381Sfs*10 0.40 TCGA-SW-A7EA-01 2 160304785 160304785 G A BAZ2B Missense_Mutation p.S157L 0.20 benign(0.32) TCGA-SW-A7EA-01 2 163253453 163253453 T G KCNH7 Missense_Mutation p.K804Q 0.28 deleterious(0.03) probably_damaging(0.919) TCGA-SW-A7EA-01 2 168099557 168099557 G A XIRP2 Missense_Mutation p.S552N 0.34 benign(0.132) TCGA-SW-A7EA-01 2 170034310 170034310 C T LRP2 Intron 0.32 TCGA-SW-A7EA-01 2 172966312 172966312 G T DLX2 Missense_Mutation p.P155T 0.36 deleterious(0.01) probably_damaging(0.995) TCGA-SW-A7EA-01 2 175618297 175618297 C T CHRNA1 Missense_Mutation p.V263I 0.07 tolerated(0.08) benign(0.129) TCGA-SW-A7EA-01 2 179296792 179296792 G A PRKRA 3'UTR 0.33 TCGA-SW-A7EA-01 2 179413255 179413255 G A TTN Missense_Mutation p.A31033V 0.29 TCGA-SW-A7EA-01 2 179566920 179566920 C T TTN Silent p.T10162T 0.12 TCGA-SW-A7EA-01 2 191851647 191851647 G A STAT1 Missense_Mutation p.T385M 0.24 deleterious(0) probably_damaging(0.996) TCGA-SW-A7EA-01 2 197187274 197187274 C T HECW2 Missense_Mutation p.R271H 0.27 deleterious(0) probably_damaging(0.999) TCGA-SW-A7EA-01 2 200136919 200136919 T C SATB2 3'UTR 0.25 TCGA-SW-A7EA-01 2 200820114 200820114 A G TYW5 Splice_Site p.X26_splice 0.33 TCGA-SW-A7EA-01 2 20146231 20146231 C T WDR35 Missense_Mutation p.C553Y 0.08 deleterious(0) probably_damaging(0.996) TCGA-SW-A7EA-01 2 209028003 209028003 G A CRYGA Silent p.R59R 0.28 TCGA-SW-A7EA-01 2 211179866 211179866 A G MYL1 5'UTR 0.29 TCGA-SW-A7EA-01 2 216269246 216269246 C T FN1 Missense_Mutation p.R1040K 0.31 tolerated(1) benign(0.003) TCGA-SW-A7EA-01 2 222428529 222428529 C T EPHA4 Missense_Mutation p.A249T 0.32 tolerated(0.17) probably_damaging(0.956) TCGA-SW-A7EA-01 2 228118841 228118841 A G COL4A3 Missense_Mutation p.E260G 0.18 probably_damaging(0.987) TCGA-SW-A7EA-01 2 230787318 230787318 G T FBXO36 Missense_Mutation p.R30L 0.37 tolerated(0.07) benign(0.268) TCGA-SW-A7EA-01 2 234227405 234227405 G A SAG Missense_Mutation p.V49M 0.30 deleterious(0) probably_damaging(0.944) TCGA-SW-A7EA-01 2 234407253 234407253 C T USP40 Missense_Mutation p.A897T 0.25 tolerated(0.84) benign(0.001) TCGA-SW-A7EA-01 2 238486710 238486710 G A RAB17 Silent p.S82S 0.41 TCGA-SW-A7EA-01 2 240946734 240946734 T - NDUFA10 Frame_Shift_Del p.K268Rfs*3 0.30 TCGA-SW-A7EA-01 2 242742926 242742926 G A GAL3ST2 Missense_Mutation p.S181N 0.24 deleterious(0.03) benign(0.071) TCGA-SW-A7EA-01 2 27481120 27481120 C T SLC30A3 Silent p.A111A 0.33 TCGA-SW-A7EA-01 2 31572658 31572658 G A XDH Missense_Mutation p.H955Y 0.48 tolerated(0.77) benign(0.046) TCGA-SW-A7EA-01 2 33500130 33500130 G A LTBP1 Missense_Mutation p.A948T 0.28 tolerated(0.1) probably_damaging(0.95) TCGA-SW-A7EA-01 2 33783772 33783772 C T RASGRP3 Missense_Mutation p.T580I 0.27 tolerated(0.2) benign(0.014) TCGA-SW-A7EA-01 2 38178783 38178783 T - RMDN2 Frame_Shift_Del p.F144Lfs*13 0.37 TCGA-SW-A7EA-01 2 43458252 43458252 C A THADA Silent p.V1899V 0.25 TCGA-SW-A7EA-01 2 50149269 50149269 A C NRXN1 Missense_Mutation p.L1486R 0.24 deleterious(0) probably_damaging(1) TCGA-SW-A7EA-01 2 63169883 63169883 C T EHBP1 Nonsense_Mutation p.R441* 0.28 TCGA-SW-A7EA-01 2 63540414 63540414 G A WDPCP Missense_Mutation p.A594V 0.26 deleterious(0) probably_damaging(0.993) TCGA-SW-A7EA-01 2 68691329 68691329 T - FBXO48 3'UTR 0.28 TCGA-SW-A7EA-01 2 73518754 73518754 G A EGR4 Missense_Mutation p.T534I 0.37 deleterious(0) probably_damaging(0.998) TCGA-SW-A7EA-01 2 73678745 73678745 A G ALMS1 Silent p.P1696P 0.29 TCGA-SW-A7EA-01 2 80529673 80529673 C G LRRTM1 Missense_Mutation p.Q424H 0.35 tolerated(0.11) benign(0.003) TCGA-SW-A7EA-01 2 85581643 85581643 G - RETSAT 5'UTR 0.22 TCGA-SW-A7EA-01 2 85852780 85852780 T C USP39 Missense_Mutation p.I230T 0.37 deleterious(0) probably_damaging(0.996) TCGA-SW-A7EA-01 2 85890590 85890590 G A SFTPB Missense_Mutation p.P306L 0.31 tolerated(0.2) benign(0.02) TCGA-SW-A7EA-01 2 86281307 86281307 G A POLR1A Nonsense_Mutation p.R722* 0.30 TCGA-SW-A7EA-01 2 86459825 86459825 G A REEP1 Missense_Mutation p.P180L 0.38 deleterious(0.04) probably_damaging(0.913) TCGA-SW-A7EA-01 2 8822277 8822277 G A ID2 5'UTR 0.26 TCGA-SW-A7EA-01 2 89513053 89513053 A G IGKV1-27 Missense_Mutation p.L69P 0.30 deleterious(0) probably_damaging(0.991) TCGA-SW-A7EA-01 2 90248949 90248949 G - IGKV1D-43 Frame_Shift_Del p.L12Sfs*15 0.18 TCGA-SW-A7EA-01 3 100951711 100951711 G T IMPG2 Silent p.P1049P 0.40 TCGA-SW-A7EA-01 3 101284917 101284917 C T TRMT10C 3'UTR 0.21 TCGA-SW-A7EA-01 3 113002318 113002318 C T BOC Missense_Mutation p.P831L 0.34 tolerated(0.14) benign(0.003) TCGA-SW-A7EA-01 3 113295781 113295781 C T SIDT1 Silent p.A176A 0.26 TCGA-SW-A7EA-01 3 118621797 118621797 A G IGSF11 Missense_Mutation p.L289P 0.35 deleterious(0) probably_damaging(0.936) TCGA-SW-A7EA-01 3 120320973 120320973 T - NDUFB4 Intron 0.23 TCGA-SW-A7EA-01 3 122418807 122418807 A - PARP14 Frame_Shift_Del p.M471* 0.19 TCGA-SW-A7EA-01 3 122869089 122869089 C - PDIA5 Frame_Shift_Del p.P386Rfs*26 0.27 TCGA-SW-A7EA-01 3 12983333 12983333 C T IQSEC1 Missense_Mutation p.G33D 0.41 deleterious_low_confidence(0.03) possibly_damaging(0.451) TCGA-SW-A7EA-01 3 1320162 1320162 C A CNTN6 Missense_Mutation p.L142I 0.36 deleterious(0.02) benign(0.44) TCGA-SW-A7EA-01 3 133329880 133329880 T - TOPBP1 Frame_Shift_Del p.I1381Sfs*61 0.26 TCGA-SW-A7EA-01 3 1363415 1363415 C T CNTN6 Silent p.I281I 0.36 TCGA-SW-A7EA-01 3 139092617 139092617 C T COPB2 Missense_Mutation p.R262Q 0.36 deleterious(0.01) probably_damaging(0.992) TCGA-SW-A7EA-01 3 140785442 140785442 G T SPSB4 Missense_Mutation p.G166W 0.27 deleterious(0.01) possibly_damaging(0.901) TCGA-SW-A7EA-01 3 14799054 14799054 A C C3orf20 Missense_Mutation p.D706A 0.39 deleterious(0.01) probably_damaging(0.981) TCGA-SW-A7EA-01 3 156009837 156009837 G A KCNAB1 Intron 0.29 TCGA-SW-A7EA-01 3 158370031 158370031 T C GFM1 Missense_Mutation p.L279S 0.26 deleterious(0) possibly_damaging(0.831) TCGA-SW-A7EA-01 3 170219001 170219001 G A SLC7A14 Silent p.G146G 0.29 TCGA-SW-A7EA-01 3 180377345 180377345 T C CCDC39 Silent p.Q211Q 0.26 TCGA-SW-A7EA-01 3 196199010 196199010 G T RNF168 Silent p.R466R 0.33 TCGA-SW-A7EA-01 3 197239113 197239113 G - BDH1 Frame_Shift_Del p.L229Wfs*3 0.09 TCGA-SW-A7EA-01 3 197598223 197598223 C G LRCH3 Missense_Mutation p.L674V 0.26 deleterious(0) possibly_damaging(0.728) TCGA-SW-A7EA-01 3 19956867 19956867 A G EFHB Missense_Mutation p.Y406H 0.32 tolerated(0.17) benign(0.027) TCGA-SW-A7EA-01 3 21462671 21462671 A G ZNF385D 3'UTR 0.27 TCGA-SW-A7EA-01 3 44497033 44497033 T C ZNF445 Silent p.P3P 0.30 TCGA-SW-A7EA-01 3 48508122 48508122 G A TREX1 Missense_Mutation p.G78D 0.23 deleterious(0.03) probably_damaging(1) TCGA-SW-A7EA-01 3 48658455 48658455 C T TMEM89 Silent p.P100P 0.33 TCGA-SW-A7EA-01 3 49690300 49690300 C - BSN Frame_Shift_Del p.P1105Rfs*5 0.31 TCGA-SW-A7EA-01 3 50374662 50374667 TCCGAG - RASSF1 Intron 0.20 TCGA-SW-A7EA-01 3 51393542 51393542 G A DOCK3 Silent p.T1424T 0.29 TCGA-SW-A7EA-01 3 51417604 51417604 C - DOCK3 Frame_Shift_Del p.P1852Qfs*45 0.20 TCGA-SW-A7EA-01 3 51979625 51979625 C T PARP3 Silent p.L333L 0.33 TCGA-SW-A7EA-01 3 51992130 51992130 C T PCBP4 Missense_Mutation p.A387T 0.38 tolerated(0.61) benign(0.156) TCGA-SW-A7EA-01 3 52554301 52554301 C T STAB1 Missense_Mutation p.R1832W 0.38 deleterious(0.02) probably_damaging(0.981) TCGA-SW-A7EA-01 3 54961972 54961972 G A LRTM1 5'UTR 0.28 TCGA-SW-A7EA-01 3 56468719 56468719 G A ERC2 Missense_Mutation p.S106F 0.32 deleterious(0) possibly_damaging(0.541) TCGA-SW-A7EA-01 3 58156282 58156282 A G FLNB Intron 0.25 TCGA-SW-A7EA-01 3 62118332 62118332 C T PTPRG Silent p.V224V 0.29 TCGA-SW-A7EA-01 3 64536634 64536634 C T ADAMTS9 Silent p.P1601P 0.29 TCGA-SW-A7EA-01 3 74344348 74344348 A G CNTN3 Missense_Mutation p.L814P 0.27 deleterious(0) possibly_damaging(0.904) TCGA-SW-A7EA-01 3 77684125 77684125 A - ROBO2 Frame_Shift_Del p.K1306Nfs*20 0.29 TCGA-SW-A7EA-01 3 96706591 96706591 G A EPHA6 Missense_Mutation p.A290T 0.32 deleterious(0) probably_damaging(0.999) TCGA-SW-A7EA-01 4 101947177 101947177 C A PPP3CA Nonsense_Mutation p.E471* 0.26 TCGA-SW-A7EA-01 4 103947506 103947506 C A SLC9B2 3'UTR 0.29 TCGA-SW-A7EA-01 4 113565896 113565896 A - LARP7 Frame_Shift_Del p.K33Rfs*36 0.24 TCGA-SW-A7EA-01 4 123265671 123265671 A G KIAA1109 Missense_Mutation p.S4230G 0.39 benign(0.001) TCGA-SW-A7EA-01 4 126240315 126240315 G T FAT4 Missense_Mutation p.A917S 0.39 probably_damaging(0.999) TCGA-SW-A7EA-01 4 128843088 128843088 T C MFSD8 Silent p.G343G 0.42 TCGA-SW-A7EA-01 4 142053546 142053546 G A RNF150 Silent p.N139N 0.31 TCGA-SW-A7EA-01 4 146059041 146059041 A G OTUD4 Silent p.H897H 0.14 TCGA-SW-A7EA-01 4 147628705 147628705 T C TTC29 Splice_Site p.X444_splice 0.37 TCGA-SW-A7EA-01 4 149357089 149357089 G T NR3C2 Nonsense_Mutation p.C308* 0.38 TCGA-SW-A7EA-01 4 155665563 155665563 G A LRAT Missense_Mutation p.A29T 0.31 tolerated(0.64) benign(0.001) TCGA-SW-A7EA-01 4 165878658 165878658 C T FAM218A 3'UTR 0.39 TCGA-SW-A7EA-01 4 165962194 165962194 C T TRIM60 Nonsense_Mutation p.R324* 0.37 TCGA-SW-A7EA-01 4 169232419 169232419 C T DDX60 5'UTR 0.07 TCGA-SW-A7EA-01 4 170913249 170913249 G T MFAP3L Silent p.T170T 0.09 TCGA-SW-A7EA-01 4 183675803 183675803 G A TENM3 Missense_Mutation p.R1428Q 0.21 deleterious(0.04) benign(0.022) TCGA-SW-A7EA-01 4 185550399 185550399 A - CASP3 3'UTR 0.26 TCGA-SW-A7EA-01 4 187527353 187527353 C T FAT1 Silent p.T3407T 0.31 TCGA-SW-A7EA-01 4 2952780 2952780 A - NOP14 Intron 0.23 TCGA-SW-A7EA-01 4 3949498 3949498 G T FAM86EP RNA 0.10 TCGA-SW-A7EA-01 4 44450078 44450078 A G KCTD8 Missense_Mutation p.S155P 0.34 tolerated(0.2) probably_damaging(0.979) TCGA-SW-A7EA-01 4 54319188 54319189 AG - FIP1L1 Frame_Shift_Del p.D466Qfs*8 0.28 TCGA-SW-A7EA-01 4 62758427 62758427 C A LPHN3 Missense_Mutation p.L444I 0.31 tolerated(0.27) benign(0.002) TCGA-SW-A7EA-01 4 75482053 75482053 C T AREGB Missense_Mutation p.R37C 0.32 deleterious(0.01) possibly_damaging(0.646) TCGA-SW-A7EA-01 4 79831985 79831987 GAA - BMP2K In_Frame_Del p.E763del 0.25 TCGA-SW-A7EA-01 4 83989622 83989622 A - COPS4 Frame_Shift_Del p.G346Dfs*3 0.28 TCGA-SW-A7EA-01 4 87968676 87968676 A - AFF1 Frame_Shift_Del p.T332Qfs*3 0.27 TCGA-SW-A7EA-01 4 88957377 88957377 T C PKD2 Missense_Mutation p.Y239H 0.04 deleterious(0) probably_damaging(0.981) TCGA-SW-A7EA-01 5 101834337 101834337 T C SLCO6A1 Missense_Mutation p.K71R 0.31 tolerated(0.51) benign(0.003) TCGA-SW-A7EA-01 5 102895168 102895168 A G NUDT12 Missense_Mutation p.C70R 0.31 deleterious(0) probably_damaging(0.979) TCGA-SW-A7EA-01 5 108714844 108714844 C T PJA2 Missense_Mutation p.S115N 0.25 tolerated(0.35) benign(0.002) TCGA-SW-A7EA-01 5 122725676 122725676 T C CEP120 Silent p.A399A 0.38 TCGA-SW-A7EA-01 5 135383107 135383107 C T TGFBI Missense_Mutation p.R257W 0.29 deleterious(0) probably_damaging(0.999) TCGA-SW-A7EA-01 5 140516291 140516291 G - PCDHB5 Frame_Shift_Del p.T427Hfs*4 0.24 TCGA-SW-A7EA-01 5 140580725 140580725 G A PCDHB11 Missense_Mutation p.V460I 0.28 tolerated_low_confidence(0.15) benign(0.078) TCGA-SW-A7EA-01 5 140594334 140594335 CA - PCDHB13 Frame_Shift_Del p.T214Sfs*25 0.23 TCGA-SW-A7EA-01 5 140784429 140784429 C T PCDHGA9 Missense_Mutation p.A637V 0.26 deleterious_low_confidence(0.02) possibly_damaging(0.511) TCGA-SW-A7EA-01 5 143539796 143539796 A C YIPF5 3'UTR 0.33 TCGA-SW-A7EA-01 5 148407354 148407354 G A SH3TC2 Silent p.G647G 0.30 TCGA-SW-A7EA-01 5 149447883 149447883 C T CSF1R Silent p.T507T 0.30 TCGA-SW-A7EA-01 5 150858882 150858882 T C SLC36A1 Silent p.L331L 0.41 TCGA-SW-A7EA-01 5 15937263 15937263 G A FBXL7 Missense_Mutation p.V482I 0.33 tolerated(1) benign(0.001) TCGA-SW-A7EA-01 5 176026665 176026665 G - GPRIN1 Frame_Shift_Del p.R58Gfs*78 0.20 TCGA-SW-A7EA-01 5 176314514 176314514 C T HK3 Missense_Mutation p.R513Q 0.34 tolerated(0.29) benign(0.004) TCGA-SW-A7EA-01 5 1798710 1798710 T C MRPL36 3'UTR 0.31 TCGA-SW-A7EA-01 5 33616019 33616019 C T ADAMTS12 Missense_Mutation p.A768T 0.26 deleterious(0) probably_damaging(0.967) TCGA-SW-A7EA-01 5 5239336 5239336 T A ADAMTS16 Missense_Mutation p.S743T 0.32 deleterious(0.03) benign(0.323) TCGA-SW-A7EA-01 5 53606269 53606269 T A ARL15 Missense_Mutation p.D14V 0.50 tolerated_low_confidence(0.08) benign(0.016) TCGA-SW-A7EA-01 5 65449338 65449338 G A SREK1 Missense_Mutation p.R70H 0.36 tolerated(0.24) benign(0.006) TCGA-SW-A7EA-01 5 66462881 66462881 G A MAST4 3'UTR 0.27 TCGA-SW-A7EA-01 5 7709336 7709336 A G ADCY2 Missense_Mutation p.S472G 0.26 tolerated(0.07) benign(0.011) TCGA-SW-A7EA-01 5 77334907 77334907 T - AP3B1 Frame_Shift_Del p.K923Nfs*4 0.28 TCGA-SW-A7EA-01 5 77424993 77424993 T - AP3B1 Frame_Shift_Del p.I597Yfs*3 0.30 TCGA-SW-A7EA-01 5 79025124 79025124 C T CMYA5 Missense_Mutation p.T179M 0.32 benign(0) TCGA-SW-A7EA-01 5 80074607 80074607 G A MSH3 Missense_Mutation p.R796Q 0.39 deleterious(0.03) probably_damaging(0.917) TCGA-SW-A7EA-01 5 90124781 90124781 T - GPR98 Frame_Shift_Del p.F5465Lfs*13 0.26 TCGA-SW-A7EA-01 5 94230520 94230520 G A MCTP1 Missense_Mutation p.A558V 0.31 tolerated(0.14) benign(0.002) TCGA-SW-A7EA-01 6 117687392 117687392 C A ROS1 Missense_Mutation p.A887S 0.58 tolerated(0.11) possibly_damaging(0.543) TCGA-SW-A7EA-01 6 12122680 12122680 C T HIVEP1 Silent p.N884N 0.29 TCGA-SW-A7EA-01 6 127898626 127898626 G T C6orf58 Missense_Mutation p.R99M 0.28 deleterious(0.02) possibly_damaging(0.549) TCGA-SW-A7EA-01 6 129714208 129714209 - A LAMA2 Frame_Shift_Ins p.V1754Sfs*13 0.19 TCGA-SW-A7EA-01 6 129785445 129785445 G A LAMA2 Missense_Mutation p.E2335K 0.35 deleterious(0.03) benign(0.138) TCGA-SW-A7EA-01 6 137815191 137815191 C T OLIG3 Silent p.S39S 0.34 TCGA-SW-A7EA-01 6 146244837 146244837 G A SHPRH Nonsense_Mutation p.R1163* 0.12 TCGA-SW-A7EA-01 6 15496722 15496722 G - JARID2 Frame_Shift_Del p.R425Gfs*36 0.32 TCGA-SW-A7EA-01 6 159006386 159006386 G T TMEM181 Missense_Mutation p.A241S 0.29 tolerated(0.5) benign(0.01) TCGA-SW-A7EA-01 6 166902326 166902326 C T RPS6KA2 Missense_Mutation p.R309Q 0.28 deleterious(0) probably_damaging(0.999) TCGA-SW-A7EA-01 6 167417716 167417716 T - FGFR1OP Intron 0.19 TCGA-SW-A7EA-01 6 168314926 168314926 C T MLLT4 Nonsense_Mutation p.R706* 0.36 TCGA-SW-A7EA-01 6 24578460 24578460 A G KIAA0319 Silent p.D461D 0.23 TCGA-SW-A7EA-01 6 27835034 27835034 T G HIST1H1B Missense_Mutation p.S92R 0.27 deleterious(0.03) probably_damaging(0.936) TCGA-SW-A7EA-01 6 29591177 29591177 C T GABBR1 Missense_Mutation p.A290T 0.31 deleterious(0.02) possibly_damaging(0.883) TCGA-SW-A7EA-01 6 30530415 30530415 G A PRR3 3'UTR 0.70 TCGA-SW-A7EA-01 6 31323363 31323363 G - HLA-B Frame_Shift_Del p.P209Qfs*5 0.24 TCGA-SW-A7EA-01 6 36169380 36169380 G T BRPF3 Missense_Mutation p.E427D 0.50 tolerated(0.63) benign(0.009) TCGA-SW-A7EA-01 6 39682520 39682520 C A KIF6 Missense_Mutation p.D67Y 0.22 deleterious(0) possibly_damaging(0.653) TCGA-SW-A7EA-01 6 45390604 45390604 C T RUNX2 Silent p.A111A 0.44 TCGA-SW-A7EA-01 6 46657944 46657944 G A TDRD6 Silent p.T693T 0.42 TCGA-SW-A7EA-01 6 47573986 47573986 G T CD2AP Missense_Mutation p.L501F 0.31 tolerated(0.11) probably_damaging(0.997) TCGA-SW-A7EA-01 6 47678561 47678561 A - GPR115 Frame_Shift_Del p.K82Sfs*29 0.20 TCGA-SW-A7EA-01 6 47681947 47681947 A G GPR115 Silent p.S322S 0.39 TCGA-SW-A7EA-01 6 51491843 51491843 G A PKHD1 Missense_Mutation p.R3913C 0.19 tolerated(0.2) benign(0.001) TCGA-SW-A7EA-01 6 52869887 52869887 T C ICK 3'UTR 0.21 TCGA-SW-A7EA-01 6 55923977 55923977 G T COL21A1 Missense_Mutation p.P891H 0.32 deleterious(0.01) benign(0.045) TCGA-SW-A7EA-01 6 64290013 64290015 TCG - PTP4A1 In_Frame_Del p.R153del 0.32 TCGA-SW-A7EA-01 6 656426 656426 C T HUS1B Silent p.A173A 0.38 TCGA-SW-A7EA-01 6 70098781 70098782 - A BAI3 Frame_Shift_Ins 0.23 TCGA-SW-A7EA-01 6 70500429 70500429 T A LMBRD1 Intron 0.35 TCGA-SW-A7EA-01 6 74073496 74073496 G A KHDC3L Silent p.S189S 0.28 TCGA-SW-A7EA-01 6 74138502 74138502 C T MB21D1 Missense_Mutation p.E383K 0.20 deleterious(0) probably_damaging(0.998) TCGA-SW-A7EA-01 6 74229174 74229174 A G EEF1A1 Silent p.G70G 0.26 TCGA-SW-A7EA-01 6 85470072 85470072 C T TBX18 Missense_Mutation p.R167H 0.51 deleterious(0) probably_damaging(0.994) TCGA-SW-A7EA-01 6 93982014 93982014 A C EPHA7 Splice_Site p.X483_splice 0.41 TCGA-SW-A7EA-01 7 100675070 100675070 A G MUC17 Missense_Mutation p.S125G 0.32 benign(0.173) TCGA-SW-A7EA-01 7 100679591 100679591 C G MUC17 Missense_Mutation p.L1632V 0.35 unknown(0) TCGA-SW-A7EA-01 7 102769197 102769197 A C NAPEPLD Silent p.S9S 0.37 TCGA-SW-A7EA-01 7 103969530 103969530 C T LHFPL3 Silent p.P101P 0.35 TCGA-SW-A7EA-01 7 108524151 108524151 T C C7orf66 Missense_Mutation p.I87M 0.31 deleterious_low_confidence(0.01) benign(0.113) TCGA-SW-A7EA-01 7 123388769 123388769 T G WASL Missense_Mutation p.Q7P 0.33 tolerated_low_confidence(0.14) unknown(0) TCGA-SW-A7EA-01 7 127239580 127239580 C T FSCN3 Silent p.C422C 0.31 TCGA-SW-A7EA-01 7 128485198 128485198 A G FLNC Missense_Mutation p.T1227A 0.32 tolerated(0.16) possibly_damaging(0.791) TCGA-SW-A7EA-01 7 128610258 128610259 - G TNPO3 Frame_Shift_Ins p.Y848Lfs*8 0.29 TCGA-SW-A7EA-01 7 129756488 129756488 G A KLHDC10 Missense_Mutation p.E153K 0.24 deleterious(0.03) benign(0.287) TCGA-SW-A7EA-01 7 138978663 138978663 A C UBN2 Silent p.G1310G 0.42 TCGA-SW-A7EA-01 7 141408842 141408842 C A WEE2 Missense_Mutation p.P95Q 0.25 deleterious(0.02) benign(0.117) TCGA-SW-A7EA-01 7 142448607 142448607 C A TRBV29-1 Silent p.G67G 0.33 TCGA-SW-A7EA-01 7 149129037 149129037 G A ZNF777 Missense_Mutation p.R776W 0.43 deleterious(0) probably_damaging(0.996) TCGA-SW-A7EA-01 7 151962183 151962183 A C KMT2C Missense_Mutation p.V375G 0.03 possibly_damaging(0.703) TCGA-SW-A7EA-01 7 152012386 152012386 T - KMT2C Frame_Shift_Del p.S143Vfs*3 0.26 TCGA-SW-A7EA-01 7 15652021 15652021 C T MEOX2 Silent p.A302A 0.38 TCGA-SW-A7EA-01 7 16685304 16685304 G A ANKMY2 5'UTR 0.29 TCGA-SW-A7EA-01 7 18631237 18631237 G A HDAC9 Missense_Mutation p.V172M 0.22 tolerated(0.31) benign(0.018) TCGA-SW-A7EA-01 7 20824806 20824806 C T SP8 Silent p.S210S 0.29 TCGA-SW-A7EA-01 7 21659621 21659621 C T DNAH11 Silent p.Y1480Y 0.27 TCGA-SW-A7EA-01 7 27141915 27141915 C T HOXA2 Missense_Mutation p.A69T 0.19 tolerated(0.48) benign(0.012) TCGA-SW-A7EA-01 7 30118358 30118358 C T PLEKHA8 Silent p.D505D 0.38 TCGA-SW-A7EA-01 7 30491916 30491916 G T NOD1 Missense_Mutation p.R373S 0.31 tolerated(0.11) benign(0.131) TCGA-SW-A7EA-01 7 30795536 30795536 G A INMT 3'UTR 0.40 TCGA-SW-A7EA-01 7 36901287 36901287 A C ELMO1 Missense_Mutation p.F654V 0.27 deleterious(0) probably_damaging(0.994) TCGA-SW-A7EA-01 7 44579426 44579426 G T NPC1L1 Silent p.G190G 0.33 TCGA-SW-A7EA-01 7 45928286 45928286 T C IGFBP1 Missense_Mutation p.V12A 0.27 deleterious(0.03) unknown(0) TCGA-SW-A7EA-01 7 50531075 50531075 T - DDC Frame_Shift_Del p.I433Sfs*98 0.30 TCGA-SW-A7EA-01 7 51095510 51095511 - T COBL Frame_Shift_Ins p.F1095Ifs*81 0.28 TCGA-SW-A7EA-01 7 5781309 5781309 C T RNF216 Silent p.V113V 0.26 TCGA-SW-A7EA-01 7 75912374 75912374 G A SRRM3 Missense_Mutation p.R563Q 0.33 deleterious(0) benign(0.238) TCGA-SW-A7EA-01 7 81358957 81358957 T C HGF Missense_Mutation p.H335R 0.34 deleterious(0) probably_damaging(0.999) TCGA-SW-A7EA-01 7 87027968 87027968 T C CROT 3'UTR 0.13 TCGA-SW-A7EA-01 7 90741929 90741929 G A CDK14 Silent p.S391S 0.36 TCGA-SW-A7EA-01 7 95222152 95222152 A G PDK4 Missense_Mutation p.V150A 0.38 tolerated(0.24) benign(0.007) TCGA-SW-A7EA-01 8 103297968 103297968 G A UBR5 Missense_Mutation p.R1753C 0.21 deleterious(0) probably_damaging(0.988) TCGA-SW-A7EA-01 8 10583692 10583692 C T SOX7 Silent p.P293P 0.19 TCGA-SW-A7EA-01 8 108348406 108348406 C A ANGPT1 Nonsense_Mutation p.E183* 0.27 TCGA-SW-A7EA-01 8 110439365 110439365 G A PKHD1L1 Missense_Mutation p.G994R 0.28 deleterious(0) possibly_damaging(0.773) TCGA-SW-A7EA-01 8 113697800 113697800 C A CSMD3 Missense_Mutation p.D773Y 0.22 deleterious(0) probably_damaging(1) TCGA-SW-A7EA-01 8 116617077 116617077 G C TRPS1 Missense_Mutation p.N373K 0.22 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-SW-A7EA-01 8 120865356 120865357 - A DSCC1 Frame_Shift_Ins p.I95Hfs*5 0.14 TCGA-SW-A7EA-01 8 125072505 125072505 C T FER1L6 Missense_Mutation p.P987S 0.20 deleterious(0) probably_damaging(1) TCGA-SW-A7EA-01 8 12957134 12957134 G A DLC1 Silent p.P904P 0.39 TCGA-SW-A7EA-01 8 133141789 133141789 C T KCNQ3 Missense_Mutation p.R780H 0.20 tolerated(0.05) benign(0.017) TCGA-SW-A7EA-01 8 133816069 133816069 G C PHF20L1 Missense_Mutation p.W171C 0.09 deleterious(0) probably_damaging(0.999) TCGA-SW-A7EA-01 8 133854921 133854922 - A PHF20L1 Frame_Shift_Ins p.M852Nfs*9 0.19 TCGA-SW-A7EA-01 8 133856424 133856424 A G PHF20L1 Silent p.V924V 0.19 TCGA-SW-A7EA-01 8 134266805 134266805 C A NDRG1 Missense_Mutation p.V191L 0.34 tolerated(0.26) benign(0.032) TCGA-SW-A7EA-01 8 135612914 135612914 A - ZFAT Intron 0.15 TCGA-SW-A7EA-01 8 135621038 135621038 G T ZFAT Missense_Mutation p.P240H 0.25 tolerated(0.44) benign(0.014) TCGA-SW-A7EA-01 8 143957293 143957293 G A CYP11B1 Missense_Mutation p.T319M 0.24 deleterious(0) probably_damaging(0.993) TCGA-SW-A7EA-01 8 145106903 145106903 C T OPLAH Missense_Mutation p.G1179D 0.28 deleterious(0) probably_damaging(1) TCGA-SW-A7EA-01 8 145663906 145663906 T C TONSL Missense_Mutation p.H534R 0.13 deleterious(0) probably_damaging(1) TCGA-SW-A7EA-01 8 16921611 16921611 G T MICU3 Missense_Mutation p.D134Y 0.16 deleterious(0) benign(0.084) TCGA-SW-A7EA-01 8 17088116 17088116 C T CNOT7 3'UTR 0.28 TCGA-SW-A7EA-01 8 17402081 17402081 T - SLC7A2 Frame_Shift_Del p.F208Lfs*9 0.21 TCGA-SW-A7EA-01 8 22006197 22006197 G A LGI3 Missense_Mutation p.R375C 0.24 deleterious(0) probably_damaging(0.997) TCGA-SW-A7EA-01 8 22012916 22012916 C T LGI3 Silent p.L89L 0.16 TCGA-SW-A7EA-01 8 22064992 22064992 G A BMP1 Silent p.S846S 0.22 TCGA-SW-A7EA-01 8 22175773 22175773 A - PIWIL2 Frame_Shift_Del p.K798Sfs*5 0.21 TCGA-SW-A7EA-01 8 22475212 22475212 G A CCAR2 Missense_Mutation p.G665E 0.24 tolerated(0.07) probably_damaging(1) TCGA-SW-A7EA-01 8 23712203 23712203 T C STC1 5'UTR 0.41 TCGA-SW-A7EA-01 8 24358389 24358389 A C ADAM7 Missense_Mutation p.K697Q 0.13 deleterious(0.03) possibly_damaging(0.86) TCGA-SW-A7EA-01 8 28574283 28574283 G A EXTL3 Missense_Mutation p.C236Y 0.26 deleterious(0) probably_damaging(0.999) TCGA-SW-A7EA-01 8 2976083 2976083 G A CSMD1 Missense_Mutation p.P2090S 0.27 probably_damaging(0.998) TCGA-SW-A7EA-01 8 33346653 33346653 C T MAK16 Nonsense_Mutation p.R130* 0.29 TCGA-SW-A7EA-01 8 42178258 42178258 C T IKBKB Silent p.N528N 0.36 TCGA-SW-A7EA-01 8 42620254 42620254 G T CHRNA6 Missense_Mutation p.P58H 0.21 tolerated(0.1) probably_damaging(1) TCGA-SW-A7EA-01 8 52744095 52744095 A G PCMTD1 Silent p.T205T 0.20 TCGA-SW-A7EA-01 8 54791859 54791859 G A RGS20 Silent p.P69P 0.07 TCGA-SW-A7EA-01 8 54792024 54792024 G A RGS20 Silent p.P124P 0.20 TCGA-SW-A7EA-01 8 55538813 55538813 A - RP1 Frame_Shift_Del p.R793Efs*55 0.17 TCGA-SW-A7EA-01 8 59514019 59514019 A - NSMAF Frame_Shift_Del p.Y432Ifs*45 0.18 TCGA-SW-A7EA-01 8 61765877 61765877 G T CHD7 Missense_Mutation p.G2198V 0.29 benign(0.001) TCGA-SW-A7EA-01 8 67974307 67974307 C A COPS5 5'UTR 0.28 TCGA-SW-A7EA-01 8 69017371 69017371 A C PREX2 Intron 0.31 TCGA-SW-A7EA-01 8 72755898 72755898 G A RP11-383H13.1 Missense_Mutation p.V88I 0.34 unknown(0) TCGA-SW-A7EA-01 8 73848914 73848914 C T KCNB2 Missense_Mutation p.R442W 0.11 deleterious(0) probably_damaging(0.997) TCGA-SW-A7EA-01 8 77775496 77775496 C T ZFHX4 Silent p.T3182T 0.44 TCGA-SW-A7EA-01 8 95539214 95539214 A G KIAA1429 Silent p.L420L 0.21 TCGA-SW-A7EA-01 8 96047735 96047736 - A NDUFAF6 Frame_Shift_Ins p.T120Nfs*8 0.20 TCGA-SW-A7EA-01 8 99168468 99168468 A - POP1 Frame_Shift_Del p.T752Lfs*12 0.18 TCGA-SW-A7EA-01 9 107379989 107379989 A G OR13C9 Missense_Mutation p.L166S 0.32 deleterious(0) probably_damaging(1) TCGA-SW-A7EA-01 9 115337525 115337525 A G KIAA1958 Missense_Mutation p.I389V 0.43 tolerated(0.57) benign(0.002) TCGA-SW-A7EA-01 9 115805282 115805282 T C ZFP37 Missense_Mutation p.H539R 0.35 deleterious(0) probably_damaging(0.999) TCGA-SW-A7EA-01 9 123476279 123476279 G A MEGF9 Missense_Mutation p.L120F 0.58 tolerated_low_confidence(0.07) benign(0.103) TCGA-SW-A7EA-01 9 123931890 123931890 A G CNTRL Silent p.K2024K 0.28 TCGA-SW-A7EA-01 9 125033141 125033141 A T MRRF Splice_Site 0.28 TCGA-SW-A7EA-01 9 127662755 127662755 G T GOLGA1 Silent p.A379A 0.33 TCGA-SW-A7EA-01 9 128111708 128111708 G A GAPVD1 Missense_Mutation p.R1097H 0.33 tolerated(0.08) possibly_damaging(0.747) TCGA-SW-A7EA-01 9 130540982 130540982 C A SH2D3C 5'UTR 0.36 TCGA-SW-A7EA-01 9 130941584 130941584 T C CIZ1 Missense_Mutation p.E301G 0.30 deleterious(0.05) probably_damaging(0.998) TCGA-SW-A7EA-01 9 131019932 131019932 C T GOLGA2 Missense_Mutation p.R862Q 0.37 tolerated(0.69) benign(0.047) TCGA-SW-A7EA-01 9 135961815 135961815 C T CELP RNA 0.54 TCGA-SW-A7EA-01 9 137323779 137323779 C T RXRA Missense_Mutation p.R358W 0.20 deleterious(0) probably_damaging(0.981) TCGA-SW-A7EA-01 9 139368994 139368994 C T SEC16A Missense_Mutation p.S1025N 0.21 tolerated(0.65) benign(0.003) TCGA-SW-A7EA-01 9 139733533 139733533 G T RABL6 Missense_Mutation p.A486S 0.23 tolerated_low_confidence(0.75) benign(0.003) TCGA-SW-A7EA-01 9 139973491 139973491 G - UAP1L1 Frame_Shift_Del p.G246Efs*107 0.31 TCGA-SW-A7EA-01 9 140151380 140151380 C T NELFB Silent p.F157F 0.34 TCGA-SW-A7EA-01 9 140728844 140728844 T C EHMT1 Missense_Mutation p.V1195A 0.16 deleterious(0) possibly_damaging(0.846) TCGA-SW-A7EA-01 9 17226202 17226203 - A CNTLN Frame_Shift_Ins p.Q153Tfs*4 0.16 TCGA-SW-A7EA-01 9 2033024 2033024 C T SMARCA2 Nonsense_Mutation p.R100* 0.31 TCGA-SW-A7EA-01 9 21971139 21971139 G A CDKN2A Silent p.A73A 0.21 TCGA-SW-A7EA-01 9 32635600 32635600 C T TAF1L 5'UTR 0.21 TCGA-SW-A7EA-01 9 35660930 35660931 CA - CCDC107 Frame_Shift_Del p.T201Rfs*8 0.26 TCGA-SW-A7EA-01 9 37919927 37919927 G A SHB Missense_Mutation p.P474L 0.37 tolerated(0.05) probably_damaging(0.947) TCGA-SW-A7EA-01 9 38016119 38016119 C A SHB Missense_Mutation p.A243S 0.27 tolerated(0.54) benign(0.344) TCGA-SW-A7EA-01 9 41962645 41962645 C G RP11-204M4.2 RNA 0.11 TCGA-SW-A7EA-01 9 732418 732418 A C KANK1 Missense_Mutation p.S1016R 0.29 deleterious(0) possibly_damaging(0.835) TCGA-SW-A7EA-01 9 74856081 74856081 C T GDA Silent p.G334G 0.34 TCGA-SW-A7EA-01 9 74863339 74863339 A - GDA Intron 0.30 TCGA-SW-A7EA-01 9 94487099 94487099 G A ROR2 Silent p.G559G 0.11 TCGA-SW-A7EA-01 9 96097671 96097671 C A C9orf129 Missense_Mutation p.S117I 0.24 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-SW-A7EA-01 9 97207415 97207415 C T HIATL1 Missense_Mutation p.P227L 0.30 tolerated(0.16) benign(0.103) TCGA-SW-A7EA-01 X 106069300 106069300 T - TBC1D8B Frame_Shift_Del p.F291Lfs*9 0.25 TCGA-SW-A7EA-01 X 106243222 106243222 G A MORC4 5'UTR 0.42 TCGA-SW-A7EA-01 X 106358657 106358657 G A RBM41 Nonsense_Mutation p.R150* 0.31 TCGA-SW-A7EA-01 X 107683365 107683365 C T COL4A5 Missense_Mutation p.R4C 0.33 unknown(0) TCGA-SW-A7EA-01 X 110555930 110555930 G - DCX Frame_Shift_Del p.K404Sfs*82 0.23 TCGA-SW-A7EA-01 X 110644386 110644386 G C DCX Silent p.P260P 0.30 TCGA-SW-A7EA-01 X 114347729 114347729 A C LRCH2 3'UTR 0.31 TCGA-SW-A7EA-01 X 119065934 119065934 T A NKAP Silent p.P296P 0.38 TCGA-SW-A7EA-01 X 123026609 123026609 T C XIAP Missense_Mutation p.L362P 0.28 tolerated(0.13) possibly_damaging(0.555) TCGA-SW-A7EA-01 X 123554388 123554388 C T TENM1 Silent p.A1585A 0.32 TCGA-SW-A7EA-01 X 125686484 125686484 C T DCAF12L1 Silent p.P36P 0.27 TCGA-SW-A7EA-01 X 128626046 128626046 G A SMARCA1 Missense_Mutation p.P563S 0.28 deleterious(0) probably_damaging(0.967) TCGA-SW-A7EA-01 X 132092475 132092475 C T HS6ST2 Silent p.A52A 0.43 TCGA-SW-A7EA-01 X 132161205 132161205 A - USP26 Frame_Shift_Del p.F348Lfs*7 0.30 TCGA-SW-A7EA-01 X 134986646 134986646 C T SAGE1 Silent p.V77V 0.35 TCGA-SW-A7EA-01 X 135482192 135482192 C T GPR112 Missense_Mutation p.A2831V 0.42 deleterious(0) probably_damaging(0.998) TCGA-SW-A7EA-01 X 148586602 148586602 G A IDS Silent p.V22V 0.18 TCGA-SW-A7EA-01 X 149638394 149638394 C T MAMLD1 Silent p.L158L 0.32 TCGA-SW-A7EA-01 X 150912582 150912582 G A CNGA2 Missense_Mutation p.R536H 0.30 deleterious(0) probably_damaging(1) TCGA-SW-A7EA-01 X 151123917 151123917 C T GABRE Missense_Mutation p.A354T 0.32 deleterious(0.04) probably_damaging(0.994) TCGA-SW-A7EA-01 X 154115732 154115732 A T F8A1 Missense_Mutation p.Q361H 0.16 deleterious(0) benign(0.387) TCGA-SW-A7EA-01 X 19398294 19398294 C T MAP3K15 Missense_Mutation p.A845T 0.33 deleterious(0) probably_damaging(1) TCGA-SW-A7EA-01 X 22231058 22231058 G T PHEX Missense_Mutation p.W561C 0.25 tolerated(0.08) probably_damaging(0.947) TCGA-SW-A7EA-01 X 24197707 24197707 G A ZFX Missense_Mutation p.V156M 0.31 deleterious(0.03) benign(0.077) TCGA-SW-A7EA-01 X 26211978 26211978 C T MAGEB6 Silent p.H5H 0.37 TCGA-SW-A7EA-01 X 27766119 27766119 G A DCAF8L2 Silent p.L369L 0.29 TCGA-SW-A7EA-01 X 2838724 2838724 G A ARSD Silent p.N119N 0.22 TCGA-SW-A7EA-01 X 30327281 30327281 C G NR0B1 Missense_Mutation p.C67S 0.33 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-SW-A7EA-01 X 37027002 37027002 C T FAM47C Silent p.D173D 0.32 TCGA-SW-A7EA-01 X 39913253 39913253 G - BCOR Frame_Shift_Del p.P1621Qfs*53 0.29 TCGA-SW-A7EA-01 X 44942753 44942754 - GTC KDM6A In_Frame_Ins p.V1113dup 0.20 TCGA-SW-A7EA-01 X 46466414 46466414 T G SLC9A7 Silent p.L717L 0.19 TCGA-SW-A7EA-01 X 47426415 47426415 C - ARAF Frame_Shift_Del p.R255Gfs*37 0.19 TCGA-SW-A7EA-01 X 48399742 48399742 C T TBC1D25 Missense_Mutation p.P49S 0.29 tolerated(0.13) benign(0.024) TCGA-SW-A7EA-01 X 49646104 49646104 C T USP27X Silent p.A398A 0.30 TCGA-SW-A7EA-01 X 52677312 52677312 G A SSX7 Silent p.S155S 0.34 TCGA-SW-A7EA-01 X 54470916 54470916 A G TSR2 Missense_Mutation p.D170G 0.40 deleterious(0.03) benign(0.001) TCGA-SW-A7EA-01 X 54784866 54784866 A C ITIH6 Silent p.G547G 0.21 TCGA-SW-A7EA-01 X 55042055 55042055 C T ALAS2 Missense_Mutation p.R375H 0.26 deleterious(0.02) probably_damaging(0.997) TCGA-SW-A7EA-01 X 63413009 63413009 T C AMER1 Missense_Mutation p.K53R 0.36 tolerated(0.08) benign(0.02) TCGA-SW-A7EA-01 X 72434430 72434430 G A NAP1L2 5'UTR 0.22 TCGA-SW-A7EA-01 X 75004754 75004754 G - MAGEE2 Frame_Shift_Del p.Q45Sfs*27 0.27 TCGA-SW-A7EA-01 X 76776390 76776390 T C ATRX Missense_Mutation p.K2359R 0.32 probably_damaging(0.988) TCGA-SW-A7EA-01 X 84525714 84525715 - A ZNF711 Frame_Shift_Ins p.F392Vfs*2 0.29 TCGA-SW-A7EA-01 X 8699940 8699940 G A KAL1 Silent p.R46R 0.44 TCGA-SW-A7EA-01 X 9859144 9859144 G A SHROOM2 Missense_Mutation p.A149T 0.29 tolerated(0.1) benign(0.002) TCGA-SW-A7EB-01 10 122622314 122622315 - A WDR11 Frame_Shift_Ins p.V201Sfs*9 0.21 TCGA-SW-A7EB-01 10 13325758 13325758 C T PHYH Missense_Mutation p.D254N 0.17 deleterious(0) probably_damaging(1) TCGA-SW-A7EB-01 10 18828309 18828309 C A CACNB2 Missense_Mutation p.R547S 0.37 deleterious(0) probably_damaging(0.998) TCGA-SW-A7EB-01 10 50725058 50725066 CTGTAGCAT - ERCC6-PGBD3 In_Frame_Del p.N500_A503delinsT 0.16 TCGA-SW-A7EB-01 10 7214587 7214587 G T SFMBT2 Missense_Mutation p.P674H 0.33 deleterious(0) probably_damaging(0.962) TCGA-SW-A7EB-01 10 7230678 7230678 G C SFMBT2 Missense_Mutation p.I572M 0.15 deleterious(0) probably_damaging(0.98) TCGA-SW-A7EB-01 10 97111067 97111067 G A SORBS1 Missense_Mutation p.H761Y 0.07 deleterious(0) probably_damaging(0.988) TCGA-SW-A7EB-01 10 97111068 97111068 G C SORBS1 Silent p.R760R 0.08 TCGA-SW-A7EB-01 10 98129828 98129828 G A TLL2 Silent p.G969G 0.09 TCGA-SW-A7EB-01 11 107536003 107536003 G A ELMOD1 3'UTR 0.14 TCGA-SW-A7EB-01 11 114453422 114453422 C G NXPE4 Missense_Mutation p.A140P 0.14 deleterious(0) probably_damaging(1) TCGA-SW-A7EB-01 11 120173035 120173035 C A POU2F3 Missense_Mutation p.S136R 0.10 tolerated(0.05) benign(0.021) TCGA-SW-A7EB-01 11 121016359 121016359 T G TECTA Missense_Mutation p.F1213L 0.12 deleterious(0) possibly_damaging(0.822) TCGA-SW-A7EB-01 11 18158886 18158886 C T MRGPRX3 Missense_Mutation p.A46V 0.22 tolerated(0.07) possibly_damaging(0.495) TCGA-SW-A7EB-01 11 28311785 28311785 G T METTL15 Missense_Mutation p.S147I 0.14 deleterious(0) probably_damaging(0.999) TCGA-SW-A7EB-01 11 55659156 55659156 T A TRIM51 3'UTR 0.20 TCGA-SW-A7EB-01 11 56468163 56468163 C T OR9G1 Silent p.F100F 0.07 TCGA-SW-A7EB-01 11 66461675 66461675 G A SPTBN2 Missense_Mutation p.R1480C 0.10 deleterious(0) probably_damaging(0.998) TCGA-SW-A7EB-01 11 88780446 88780446 C A GRM5 Missense_Mutation p.A199S 0.21 deleterious(0.04) probably_damaging(0.999) TCGA-SW-A7EB-01 11 92087691 92087691 G T FAT3 Missense_Mutation p.D805Y 0.09 probably_damaging(1) TCGA-SW-A7EB-01 12 100451405 100451405 A C UHRF1BP1L Missense_Mutation p.L1123W 0.10 deleterious(0.02) probably_damaging(0.954) TCGA-SW-A7EB-01 12 101436229 101436229 G A ANO4 Silent p.L344L 0.08 TCGA-SW-A7EB-01 12 104134528 104134528 T A STAB2 Missense_Mutation p.C1959S 0.07 deleterious(0) possibly_damaging(0.632) TCGA-SW-A7EB-01 12 110928016 110928016 G A FAM216A 3'UTR 0.05 TCGA-SW-A7EB-01 12 120260752 120260752 G T CIT Missense_Mutation p.P328H 0.11 tolerated(0.11) possibly_damaging(0.704) TCGA-SW-A7EB-01 12 32481441 32481441 A C BICD1 Missense_Mutation p.K684N 0.06 deleterious(0) probably_damaging(0.997) TCGA-SW-A7EB-01 12 53045392 53045392 G A KRT2 Missense_Mutation p.R179C 0.23 deleterious(0) probably_damaging(0.991) TCGA-SW-A7EB-01 12 55615453 55615453 G T OR10A7 Missense_Mutation p.L215F 0.16 deleterious(0.03) possibly_damaging(0.749) TCGA-SW-A7EB-01 12 56092216 56092216 G A ITGA7 Silent p.F385F 0.11 TCGA-SW-A7EB-01 12 85285836 85285836 C A SLC6A15 Missense_Mutation p.D22Y 0.17 deleterious(0) probably_damaging(0.999) TCGA-SW-A7EB-01 12 85638608 85638608 T C LRRIQ1 Silent p.F1686F 0.15 TCGA-SW-A7EB-01 12 94243993 94243993 C T CRADD Silent p.N182N 0.14 TCGA-SW-A7EB-01 12 99059556 99059556 A C APAF1 Missense_Mutation p.K394T 0.17 deleterious(0.01) benign(0.18) TCGA-SW-A7EB-01 13 111276603 111276603 G T CARKD Missense_Mutation p.A92S 0.14 tolerated(0.33) probably_damaging(0.911) TCGA-SW-A7EB-01 13 20346622 20346622 C G PSPC1 Missense_Mutation p.R145T 0.12 deleterious(0) probably_damaging(0.978) TCGA-SW-A7EB-01 13 36521535 36521535 C A DCLK1 Missense_Mutation p.E261D 0.17 tolerated(0.05) unknown(0) TCGA-SW-A7EB-01 13 53217151 53217151 G T HNRNPA1L2 Missense_Mutation p.C175F 0.08 deleterious(0.01) probably_damaging(0.974) TCGA-SW-A7EB-01 13 75915673 75915673 G C TBC1D4 Missense_Mutation p.L487V 0.21 deleterious(0) probably_damaging(0.997) TCGA-SW-A7EB-01 13 78130729 78130729 A G SCEL Splice_Site p.X15_splice 0.20 TCGA-SW-A7EB-01 13 94482727 94482727 G A GPC6 Missense_Mutation p.A214T 0.19 tolerated(0.09) possibly_damaging(0.74) TCGA-SW-A7EB-01 13 99948085 99948085 C G GPR183 Missense_Mutation p.R105S 0.10 deleterious(0) possibly_damaging(0.803) TCGA-SW-A7EB-01 14 104378929 104378929 C T C14orf2 3'UTR 0.10 TCGA-SW-A7EB-01 14 21109841 21109841 C G OR6S1 Missense_Mutation p.D4H 0.11 tolerated(0.11) benign(0.188) TCGA-SW-A7EB-01 14 22280034 22280034 A C TRAV9-1 Missense_Mutation p.K75Q 0.19 tolerated(0.17) benign(0.082) TCGA-SW-A7EB-01 14 24621178 24621178 G A RNF31 Missense_Mutation p.G703S 0.09 tolerated(0.44) benign(0.002) TCGA-SW-A7EB-01 14 24683307 24683307 G C MDP1 Missense_Mutation p.Q152E 0.13 tolerated(1) benign(0.001) TCGA-SW-A7EB-01 14 39870706 39870706 T C FBXO33 Missense_Mutation p.D357G 0.09 deleterious_low_confidence(0) possibly_damaging(0.715) TCGA-SW-A7EB-01 14 42356727 42356727 A G LRFN5 Missense_Mutation p.E300G 0.10 deleterious(0) probably_damaging(0.99) TCGA-SW-A7EB-01 14 47426818 47426818 C T MDGA2 Silent p.L616L 0.14 TCGA-SW-A7EB-01 14 51464791 51464791 G T TRIM9 Missense_Mutation p.T527N 0.19 deleterious(0.04) benign(0.08) TCGA-SW-A7EB-01 15 77348199 77348199 T A TSPAN3 Missense_Mutation p.I88F 0.14 tolerated(0.27) benign(0.014) TCGA-SW-A7EB-01 15 81181097 81181097 C T KIAA1199 Silent p.G308G 0.09 TCGA-SW-A7EB-01 16 11214529 11214529 G A CLEC16A Missense_Mutation p.R725Q 0.17 deleterious(0.04) probably_damaging(0.946) TCGA-SW-A7EB-01 16 310022 310022 C A ITFG3 Missense_Mutation p.T147K 0.18 deleterious(0.01) benign(0.178) TCGA-SW-A7EB-01 16 3724428 3724428 G A TRAP1 Missense_Mutation p.A319V 0.11 deleterious(0) possibly_damaging(0.713) TCGA-SW-A7EB-01 16 57761241 57761241 G A CCDC135 Missense_Mutation p.E706K 0.07 deleterious(0) probably_damaging(0.999) TCGA-SW-A7EB-01 16 75669926 75669926 G A KARS Nonsense_Mutation p.Q213* 0.10 TCGA-SW-A7EB-01 17 10235442 10235442 C G MYH13 Missense_Mutation p.E758Q 0.09 deleterious(0.04) benign(0.224) TCGA-SW-A7EB-01 17 10399320 10399320 C T MYH1 Missense_Mutation p.A1706T 0.18 deleterious(0.01) possibly_damaging(0.705) TCGA-SW-A7EB-01 17 38508602 38508602 G C RARA Missense_Mutation p.R217P 0.11 tolerated(0.17) probably_damaging(0.978) TCGA-SW-A7EB-01 17 43923436 43923436 C T SPPL2C Silent p.F388F 0.29 TCGA-SW-A7EB-01 17 45384955 45384955 A G ITGB3 Silent p.K751K 0.12 TCGA-SW-A7EB-01 17 48940751 48940751 C G TOB1 Missense_Mutation p.G210R 0.13 tolerated(0.07) probably_damaging(1) TCGA-SW-A7EB-01 17 57951908 57951908 A T TUBD1 Missense_Mutation p.M309K 0.21 deleterious(0.01) benign(0.323) TCGA-SW-A7EB-01 17 58740467 58740467 C T PPM1D Nonsense_Mutation p.R458* 0.24 TCGA-SW-A7EB-01 17 6012997 6012997 G A WSCD1 Missense_Mutation p.R307Q 0.36 tolerated(0.19) benign(0.009) TCGA-SW-A7EB-01 17 7578524 7578524 G A TP53 Nonsense_Mutation p.Q136* 0.29 TCGA-SW-A7EB-01 17 8076747 8076747 C A TMEM107 3'Flank 0.09 TCGA-SW-A7EB-01 18 22806812 22806812 G A ZNF521 Missense_Mutation p.T357M 0.28 deleterious_low_confidence(0.01) probably_damaging(0.964) TCGA-SW-A7EB-01 19 11143976 11143976 C T SMARCA4 Missense_Mutation p.A1186V 0.28 possibly_damaging(0.742) TCGA-SW-A7EB-01 19 22785624 22785624 C T AC011467.1 3'Flank 0.40 TCGA-SW-A7EB-01 19 31768382 31768382 T A TSHZ3 Nonsense_Mutation p.K773* 0.17 TCGA-SW-A7EB-01 19 36278285 36278285 G T ARHGAP33 Missense_Mutation p.G779C 0.12 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-SW-A7EB-01 19 39196752 39196752 G A ACTN4 Missense_Mutation p.V185M 0.16 deleterious(0) probably_damaging(0.999) TCGA-SW-A7EB-01 19 39876600 39876600 G C PAF1 3'UTR 0.16 TCGA-SW-A7EB-01 19 39898759 39898759 G C ZFP36 Missense_Mutation p.R140P 0.09 deleterious(0) probably_damaging(1) TCGA-SW-A7EB-01 19 46280652 46280652 C T DMPK Missense_Mutation p.G370D 0.10 tolerated(0.12) possibly_damaging(0.885) TCGA-SW-A7EB-01 19 47998736 47998736 G A NAPA Intron 0.11 TCGA-SW-A7EB-01 19 49639113 49639113 A G PPFIA3 Missense_Mutation p.Y533C 0.22 deleterious(0.04) possibly_damaging(0.784) TCGA-SW-A7EB-01 19 52376292 52376292 C G ZNF577 Missense_Mutation p.Q317H 0.09 deleterious(0) possibly_damaging(0.862) TCGA-SW-A7EB-01 19 55495058 55495058 G C NLRP2 Missense_Mutation p.E664D 0.11 tolerated(0.11) benign(0.061) TCGA-SW-A7EB-01 19 58049740 58049740 C T ZNF549 Silent p.R456R 0.16 TCGA-SW-A7EB-01 1 110883253 110883253 C T RBM15 Missense_Mutation p.S409F 0.10 deleterious(0.01) benign(0.378) TCGA-SW-A7EB-01 1 116940630 116940630 G T ATP1A1 Missense_Mutation p.K698N 0.15 deleterious(0) probably_damaging(1) TCGA-SW-A7EB-01 1 150470192 150470192 G A TARS2 Missense_Mutation p.A403T 0.17 deleterious(0) probably_damaging(0.959) TCGA-SW-A7EB-01 1 155447875 155447875 C G ASH1L Missense_Mutation p.E1596Q 0.12 deleterious_low_confidence(0) benign(0.246) TCGA-SW-A7EB-01 1 157014248 157014248 C T ARHGEF11 5'UTR 0.14 TCGA-SW-A7EB-01 1 159906269 159906269 C G IGSF9 Missense_Mutation p.R198P 0.13 deleterious(0) possibly_damaging(0.64) TCGA-SW-A7EB-01 1 178489921 178489921 C A TEX35 Missense_Mutation p.A152E 0.10 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-SW-A7EB-01 1 186084057 186084057 C T HMCN1 Nonsense_Mutation p.R3795* 0.21 TCGA-SW-A7EB-01 1 186862278 186862278 A C PLA2G4A Missense_Mutation p.E84A 0.16 tolerated(0.3) benign(0.008) TCGA-SW-A7EB-01 1 196963219 196963219 G C CFHR5 Missense_Mutation p.C147S 0.09 deleterious(0.02) probably_damaging(0.934) TCGA-SW-A7EB-01 1 221057635 221057635 A G HLX Silent p.S352S 0.19 TCGA-SW-A7EB-01 1 231830065 231830065 C A DISC1 Nonsense_Mutation p.C187* 0.08 TCGA-SW-A7EB-01 1 235918903 235918903 A G LYST Silent p.D2368D 0.11 TCGA-SW-A7EB-01 1 236762808 236762808 C T HEATR1 Missense_Mutation p.R159K 0.10 tolerated(1) benign(0.001) TCGA-SW-A7EB-01 1 24121102 24121102 G T LYPLA2 Intron 0.10 TCGA-SW-A7EB-01 1 3350342 3350342 G A PRDM16 Silent p.E1266E 0.07 TCGA-SW-A7EB-01 1 35260174 35260174 C A GJA4 Missense_Mutation p.D120E 0.10 tolerated(0.44) benign(0.012) TCGA-SW-A7EB-01 1 43672509 43672509 C G WDR65 Missense_Mutation p.S554C 0.09 deleterious(0) probably_damaging(0.919) TCGA-SW-A7EB-01 1 62594611 62594611 C A INADL Silent p.I1755I 0.20 TCGA-SW-A7EB-01 1 74737345 74737345 G A FPGT-TNNI3K Missense_Mutation p.G247S 0.11 tolerated(0.28) probably_damaging(1) TCGA-SW-A7EB-01 1 74801701 74801701 C T FPGT-TNNI3K Missense_Mutation p.R298C 0.08 deleterious(0) possibly_damaging(0.631) TCGA-SW-A7EB-01 1 79101113 79101113 C A IFI44L Missense_Mutation p.A272E 0.13 tolerated(1) benign(0.004) TCGA-SW-A7EB-01 1 79383337 79383337 T C ELTD1 Silent p.P577P 0.08 TCGA-SW-A7EB-01 1 90179312 90179312 G C LRRC8C Missense_Mutation p.V395L 0.14 deleterious(0.02) benign(0.138) TCGA-SW-A7EB-01 20 34312510 34312510 G C RBM39 Missense_Mutation p.I223M 0.05 deleterious(0.03) probably_damaging(0.996) TCGA-SW-A7EB-01 20 43927060 43927060 G A MATN4 Silent p.R392R 0.05 TCGA-SW-A7EB-01 20 60740550 60740550 C T SS18L1 Missense_Mutation p.T299M 0.07 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-SW-A7EB-01 20 61594680 61594680 C T SLC17A9 Silent p.N228N 0.11 TCGA-SW-A7EB-01 21 22656609 22656609 T A NCAM2 Missense_Mutation p.S76T 0.10 deleterious(0) probably_damaging(0.998) TCGA-SW-A7EB-01 21 38593793 38593793 C G DSCR3 3'Flank 0.09 TCGA-SW-A7EB-01 21 43711665 43711665 G A ABCG1 Missense_Mutation p.D530N 0.10 deleterious(0.02) benign(0.418) TCGA-SW-A7EB-01 22 21800636 21800636 C T HIC2 Silent p.A484A 0.19 TCGA-SW-A7EB-01 22 26118408 26118408 C T ADRBK2 Silent p.N686N 0.06 TCGA-SW-A7EB-01 22 39636883 39636883 C T PDGFB Intron 0.22 TCGA-SW-A7EB-01 22 39883371 39883371 A T MGAT3 Nonsense_Mutation p.K7* 0.11 TCGA-SW-A7EB-01 22 42461852 42461852 C A NAGA Missense_Mutation p.D217Y 0.09 deleterious(0) probably_damaging(0.999) TCGA-SW-A7EB-01 2 172965238 172965238 C G DLX2 3'UTR 0.18 TCGA-SW-A7EB-01 2 179642497 179642497 G T TTN Missense_Mutation p.Q1472K 0.11 TCGA-SW-A7EB-01 2 201440164 201440164 T C SGOL2 Silent p.F1254F 0.26 TCGA-SW-A7EB-01 2 20146240 20146240 G C WDR35 Missense_Mutation p.S550C 0.12 deleterious(0.01) probably_damaging(0.997) TCGA-SW-A7EB-01 2 21234811 21234811 C T APOB Silent p.A1643A 0.11 TCGA-SW-A7EB-01 2 215876323 215876323 G T ABCA12 Silent p.T724T 0.09 TCGA-SW-A7EB-01 2 220156242 220156242 C G PTPRN Missense_Mutation p.K893N 0.22 deleterious(0) probably_damaging(0.999) TCGA-SW-A7EB-01 2 225638012 225638012 C T DOCK10 Silent p.S2022S 0.11 TCGA-SW-A7EB-01 2 238275439 238275439 G C COL6A3 Missense_Mutation p.F1797L 0.12 probably_damaging(0.997) TCGA-SW-A7EB-01 2 238436134 238436134 G C MLPH Missense_Mutation p.R332T 0.07 deleterious(0.03) benign(0.052) TCGA-SW-A7EB-01 2 26699772 26699772 G A OTOF Missense_Mutation p.T888M 0.16 deleterious(0) possibly_damaging(0.841) TCGA-SW-A7EB-01 2 27157526 27157526 G A DPYSL5 Missense_Mutation p.A291T 0.10 deleterious(0) possibly_damaging(0.788) TCGA-SW-A7EB-01 2 69207075 69207075 C T GKN1 Missense_Mutation p.P130S 0.18 tolerated(0.07) probably_damaging(0.959) TCGA-SW-A7EB-01 2 71681117 71681117 C A DYSF 5'UTR 0.24 TCGA-SW-A7EB-01 2 74808971 74808971 C G M1AP Missense_Mutation p.S200T 0.13 tolerated(0.38) benign(0.026) TCGA-SW-A7EB-01 3 11067468 11067468 G C SLC6A1 Missense_Mutation p.D287H 0.06 deleterious(0) probably_damaging(0.999) TCGA-SW-A7EB-01 3 111845834 111845834 T C GCSAM Missense_Mutation p.N66D 0.15 tolerated(0.11) benign(0.022) TCGA-SW-A7EB-01 3 112738400 112738400 C G C3orf17 Missense_Mutation p.G32A 0.14 tolerated(0.57) benign(0.167) TCGA-SW-A7EB-01 3 126261406 126261406 C G CHST13 Nonsense_Mutation p.Y337* 0.18 TCGA-SW-A7EB-01 3 127441367 127441367 T G MGLL Missense_Mutation p.D102A 0.11 tolerated(0.07) benign(0.064) TCGA-SW-A7EB-01 3 138116307 138116307 G A MRAS Missense_Mutation p.R112H 0.23 deleterious(0) probably_damaging(0.943) TCGA-SW-A7EB-01 3 16646814 16646814 C T DAZL 5'Flank 0.10 TCGA-SW-A7EB-01 3 46307007 46307007 G C CCR3 Missense_Mutation p.E141Q 0.09 tolerated(0.08) possibly_damaging(0.9) TCGA-SW-A7EB-01 3 48670960 48670960 C T SLC26A6 Silent p.L44L 0.10 TCGA-SW-A7EB-01 3 63981308 63981308 G A ATXN7 Missense_Mutation p.V604I 0.08 tolerated(0.23) benign(0.021) TCGA-SW-A7EB-01 3 69072462 69072462 G C TMF1 Missense_Mutation p.Q1050E 0.09 deleterious(0.01) probably_damaging(0.992) TCGA-SW-A7EB-01 3 98217422 98217422 G T OR5K2 Missense_Mutation p.V300F 0.11 deleterious(0.01) benign(0.021) TCGA-SW-A7EB-01 4 3441212 3441212 C G RGS12 Missense_Mutation p.P1382R 0.16 tolerated_low_confidence(0.09) probably_damaging(0.942) TCGA-SW-A7EB-01 4 69972908 69972908 G C UGT2B7 Missense_Mutation p.D340H 0.10 deleterious(0.04) possibly_damaging(0.629) TCGA-SW-A7EB-01 4 8396463 8396463 G A ACOX3 Missense_Mutation p.R355C 0.24 deleterious(0) probably_damaging(1) TCGA-SW-A7EB-01 4 87746597 87746597 T A SLC10A6 Missense_Mutation p.I299L 0.08 tolerated(1) benign(0) TCGA-SW-A7EB-01 4 87746598 87746598 C T SLC10A6 Silent p.L298L 0.09 TCGA-SW-A7EB-01 5 113740482 113740482 A C KCNN2 Silent p.P310P 0.13 TCGA-SW-A7EB-01 5 131324532 131324532 C G ACSL6 Silent p.L206L 0.09 TCGA-SW-A7EB-01 5 139060618 139060618 G A CXXC5 Silent p.E170E 0.11 TCGA-SW-A7EB-01 5 167517689 167517689 G A TENM2 Silent p.Q542Q 0.08 TCGA-SW-A7EB-01 5 178392207 178392207 G T ZNF454 Nonsense_Mutation p.G268* 0.08 TCGA-SW-A7EB-01 5 54603500 54603500 C T DHX29 5'UTR 0.23 TCGA-SW-A7EB-01 6 136599510 136599510 T C BCLAF1 Missense_Mutation p.E170G 0.05 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-SW-A7EB-01 6 152563482 152563482 G C SYNE1 Missense_Mutation p.Q6596E 0.09 benign(0.003) TCGA-SW-A7EB-01 6 165703443 165703444 - T C6orf118 Frame_Shift_Ins p.E412Rfs*3 0.14 TCGA-SW-A7EB-01 6 26200065 26200065 G A HIST1H2BF Silent p.R93R 0.26 TCGA-SW-A7EB-01 6 64416694 64416694 C G PHF3 Missense_Mutation p.I1213M 0.14 deleterious(0) probably_damaging(1) TCGA-SW-A7EB-01 7 100304559 100304559 G C POP7 Missense_Mutation p.D36H 0.22 deleterious(0.04) possibly_damaging(0.8) TCGA-SW-A7EB-01 7 142606704 142606704 G C TRPV5 Missense_Mutation p.S616C 0.11 deleterious(0.03) probably_damaging(0.928) TCGA-SW-A7EB-01 7 147815267 147815267 C G CNTNAP2 Missense_Mutation p.T814S 0.12 tolerated(0.09) possibly_damaging(0.664) TCGA-SW-A7EB-01 7 150815396 150815396 C T AGAP3 Missense_Mutation p.T269I 0.12 deleterious(0.04) probably_damaging(0.996) TCGA-SW-A7EB-01 7 21938992 21938992 C G DNAH11 Missense_Mutation p.T4370S 0.12 benign(0.034) TCGA-SW-A7EB-01 7 4901338 4901338 G A PAPOLB Missense_Mutation p.T34M 0.11 tolerated(0.24) possibly_damaging(0.801) TCGA-SW-A7EB-01 7 76652994 76652994 G T UPK3B 3'Flank 0.21 TCGA-SW-A7EB-01 7 76984577 76984577 G A GSAP Missense_Mutation p.H431Y 0.12 deleterious(0) probably_damaging(0.997) TCGA-SW-A7EB-01 7 92838124 92838124 C G HEPACAM2 Missense_Mutation p.D261H 0.11 deleterious(0.01) probably_damaging(0.981) TCGA-SW-A7EB-01 7 97363084 97363084 G C TAC1 Missense_Mutation p.R58T 0.08 deleterious(0) benign(0.301) TCGA-SW-A7EB-01 8 101178094 101178094 C A SPAG1 Missense_Mutation p.L65I 0.10 tolerated(0.64) benign(0.101) TCGA-SW-A7EB-01 8 126448388 126448388 C T TRIB1 Missense_Mutation p.A265V 0.06 deleterious(0) benign(0.402) TCGA-SW-A7EB-01 8 133771118 133771118 C T TMEM71 Missense_Mutation p.R3Q 0.11 tolerated(0.2) benign(0.283) TCGA-SW-A7EB-01 8 16850465 16850467 AGT - FGF20 3'UTR 0.18 TCGA-SW-A7EB-01 8 55534054 55534054 C T RP1 Silent p.V176V 0.05 TCGA-SW-A7EB-01 8 56436779 56436779 C G XKR4 Missense_Mutation p.T649S 0.11 tolerated(0.4) probably_damaging(0.97) TCGA-SW-A7EB-01 8 97311962 97311962 G A PTDSS1 Nonsense_Mutation p.W214* 0.08 TCGA-SW-A7EB-01 9 106876273 106876273 G C SMC2 Missense_Mutation p.K481N 0.10 tolerated(0.05) benign(0.008) TCGA-SW-A7EB-01 9 129870419 129870419 C T ANGPTL2 Missense_Mutation p.A198T 0.16 tolerated(0.25) benign(0.057) TCGA-SW-A7EB-01 9 21217239 21217239 C T IFNA16 Silent p.L22L 0.19 TCGA-SW-A7EB-01 9 86587060 86587060 G A HNRNPK Silent p.Y230Y 0.07 TCGA-VQ-A8DL-01 10 103534666 103534666 T - FGF8 Frame_Shift_Del p.T54Lfs*12 0.21 TCGA-VQ-A8DL-01 10 38121464 38121465 - CTG ZNF248 In_Frame_Ins p.S273dup 0.21 TCGA-VQ-A8DL-01 10 61014037 61014046 TGTACTACTA - FAM13C Intron 0.39 TCGA-VQ-A8DL-01 10 75214166 75214171 ATACCA - PPP3CB Splice_Site p.X395_splice 0.24 TCGA-VQ-A8DL-01 10 89720779 89720780 - C PTEN Frame_Shift_Ins p.N311Qfs*2 0.24 TCGA-VQ-A8DL-01 10 97386454 97386459 TATTAC AAT ALDH18A1 Splice_Site p.X384_splice 0.19 TCGA-VQ-A8DL-01 11 124253168 124253168 C T OR8B2 Silent p.R24R 0.30 TCGA-VQ-A8DL-01 11 18956154 18956154 C T MRGPRX1 Missense_Mutation p.A60T 0.29 tolerated(0.09) benign(0.072) TCGA-VQ-A8DL-01 11 65273297 65273298 - ACAT MALAT1 RNA 0.24 TCGA-VQ-A8DL-01 11 67265104 67265105 - G PITPNM1 Frame_Shift_Ins p.L610Pfs*31 0.22 TCGA-VQ-A8DL-01 11 6891183 6891183 C A OR10A2 Silent p.P66P 0.31 TCGA-VQ-A8DL-01 11 71146495 71146495 C T DHCR7 Missense_Mutation p.A452T 0.22 tolerated(0.32) benign(0.244) TCGA-VQ-A8DL-01 11 73803555 73803555 G AACC C2CD3 In_Frame_Ins p.T1141_T1142insV 0.24 TCGA-VQ-A8DL-01 11 8705833 8705834 - G RPL27A Intron 0.19 TCGA-VQ-A8DL-01 11 99931992 99931992 T A CNTN5 Missense_Mutation p.S343R 0.07 tolerated(0.67) benign(0.201) TCGA-VQ-A8DL-01 12 107371502 107371503 - TACT MTERFD3 Frame_Shift_Ins p.Q331Sfs*31 0.29 TCGA-VQ-A8DL-01 12 10868335 10868335 T C YBX3 Silent p.G136G 0.28 TCGA-VQ-A8DL-01 12 15034978 15034979 - ATA MGP 3'UTR 0.54 TCGA-VQ-A8DL-01 12 21981946 21981946 G A ABCC9 Silent p.N1205N 0.16 TCGA-VQ-A8DL-01 12 27179396 27179398 GTG - MED21 In_Frame_Del p.G30del 0.35 TCGA-VQ-A8DL-01 12 40619416 40619416 T GA LRRK2 Frame_Shift_Ins p.Y71Efs*38 0.30 TCGA-VQ-A8DL-01 13 58208475 58208475 C T PCDH17 Missense_Mutation p.R599C 0.27 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8DL-01 13 99092452 99092452 C T FARP1 Silent p.P864P 0.33 TCGA-VQ-A8DL-01 14 105405060 105405060 C A AHNAK2 Missense_Mutation p.M5576I 0.20 benign(0.046) TCGA-VQ-A8DL-01 14 105621917 105621927 GTGCATCCCCC - JAG2 Frame_Shift_Del p.G254Rfs*18 0.21 TCGA-VQ-A8DL-01 14 33015304 33015305 - G AKAP6 Frame_Shift_Ins p.R484Kfs*3 0.18 TCGA-VQ-A8DL-01 14 35736081 35736082 - GTAA KIAA0391 Nonsense_Mutation 0.23 TCGA-VQ-A8DL-01 14 45496649 45496649 C T FAM179B Missense_Mutation p.S1159L 0.24 deleterious(0.03) benign(0.007) TCGA-VQ-A8DL-01 14 45644500 45644500 C T FANCM Missense_Mutation p.T848I 0.19 deleterious(0.03) benign(0.024) TCGA-VQ-A8DL-01 14 45645227 45645227 A T FANCM Missense_Mutation p.Q1090H 0.20 tolerated(0.06) possibly_damaging(0.553) TCGA-VQ-A8DL-01 14 51132284 51132285 - ATC SAV1 In_Frame_Ins p.D49dup 0.30 TCGA-VQ-A8DL-01 14 53020294 53020295 - CT GPR137C Frame_Shift_Ins p.Y145Sfs*28 0.35 TCGA-VQ-A8DL-01 14 63447637 63447638 - CAG KCNH5 In_Frame_Ins p.L298dup 0.30 TCGA-VQ-A8DL-01 14 76905765 76905765 G A ESRRB Silent p.P23P 0.32 TCGA-VQ-A8DL-01 14 94121677 94121678 - TAG UNC79 In_Frame_Ins p.S1991dup 0.31 TCGA-VQ-A8DL-01 14 96848830 96848830 A C GSKIP Missense_Mutation p.E82D 0.17 tolerated(0.4) benign(0.004) TCGA-VQ-A8DL-01 15 43585724 43585725 - G TGM7 Frame_Shift_Ins p.Q39Pfs*25 0.18 TCGA-VQ-A8DL-01 15 43783889 43783890 - TAAC TP53BP1 Frame_Shift_Ins p.P117Vfs*51 0.29 TCGA-VQ-A8DL-01 15 44066433 44066439 TGAACCT - ELL3 Frame_Shift_Del p.R327* 0.27 TCGA-VQ-A8DL-01 15 45455820 45455821 - TGGT DUOX1 Frame_Shift_Ins p.S1449Gfs*12 0.25 TCGA-VQ-A8DL-01 15 49531565 49531569 GTAAC - GALK2 Splice_Site p.X168_splice 0.19 TCGA-VQ-A8DL-01 15 52339019 52339020 - G MAPK6 Frame_Shift_Ins p.L124Ffs*34 0.25 TCGA-VQ-A8DL-01 15 56958914 56958914 T C ZNF280D Missense_Mutation p.K606E 0.22 deleterious(0.02) benign(0.103) TCGA-VQ-A8DL-01 15 59347956 59347956 G A RNF111 Silent p.E361E 0.16 TCGA-VQ-A8DL-01 15 83335571 83335571 C A AP3B2 Missense_Mutation p.A594S 0.27 tolerated(0.17) benign(0.085) TCGA-VQ-A8DL-01 15 86122605 86122606 - CTG AKAP13 In_Frame_Ins p.Q436delinsPE 0.23 TCGA-VQ-A8DL-01 16 30096388 30096388 G A PPP4C 3'UTR 0.10 TCGA-VQ-A8DL-01 16 50744629 50744629 G A NOD2 Silent p.P269P 0.33 TCGA-VQ-A8DL-01 16 57059695 57059695 G T NLRC5 Silent p.L280L 0.12 TCGA-VQ-A8DL-01 16 70365712 70365713 - AG DDX19B Frame_Shift_Ins p.A373Gfs*4 0.24 TCGA-VQ-A8DL-01 16 81183331 81183331 C - PKD1L2 RNA 0.30 TCGA-VQ-A8DL-01 17 36478056 36478059 AGAT - MRPL45 Frame_Shift_Del p.D237Yfs*15 0.09 TCGA-VQ-A8DL-01 17 36523899 36523899 T - SOCS7 Frame_Shift_Del p.I443Sfs*30 0.09 TCGA-VQ-A8DL-01 17 36719075 36719078 GTTG - SRCIN1 Frame_Shift_Del p.N274Gfs*100 0.16 TCGA-VQ-A8DL-01 17 36909536 36909537 GT - PSMB3 Frame_Shift_Del p.D47Pfs*12 0.10 TCGA-VQ-A8DL-01 17 38560458 38560458 C A TOP2A Missense_Mutation p.K743N 0.11 deleterious(0) probably_damaging(0.987) TCGA-VQ-A8DL-01 17 39394575 39394575 G A KRTAP9-8 Missense_Mutation p.G91D 0.04 deleterious(0.04) unknown(0) TCGA-VQ-A8DL-01 17 39394576 39394576 T C KRTAP9-8 Silent p.G91G 0.04 TCGA-VQ-A8DL-01 17 39578641 39578641 C T KRT37 Missense_Mutation p.E260K 0.03 deleterious(0.02) benign(0.113) TCGA-VQ-A8DL-01 17 39637118 39637118 C T KRT35 Missense_Mutation p.A78T 0.06 tolerated(0.4) benign(0.002) TCGA-VQ-A8DL-01 17 39680669 39680669 G A KRT19 Nonsense_Mutation p.Q262* 0.03 TCGA-VQ-A8DL-01 17 46988208 46988209 - GTTC UBE2Z Frame_Shift_Ins p.V122Rfs*4 0.20 TCGA-VQ-A8DL-01 17 56060137 56060140 CATC - VEZF1 Frame_Shift_Del p.M217Lfs*4 0.13 TCGA-VQ-A8DL-01 17 74097940 74097941 - AC EXOC7 Frame_Shift_Ins p.S44Cfs*12 0.20 TCGA-VQ-A8DL-01 17 7577565 7577566 TT - TP53 Frame_Shift_Del p.N239Qfs*24 0.21 TCGA-VQ-A8DL-01 17 8273688 8273689 - AGCT KRBA2 Frame_Shift_Ins p.S82Afs*11 0.28 TCGA-VQ-A8DL-01 18 21044489 21044490 - GGTTGGTT RIOK3 Frame_Shift_Ins p.P149Gfs*24 0.33 TCGA-VQ-A8DL-01 18 3457625 3457633 GTCCATCAG - TGIF1 In_Frame_Del p.R298_V301delinsL 0.23 TCGA-VQ-A8DL-01 18 42449206 42449207 - AGTG SETBP1 Frame_Shift_Ins p.D168Efs*2 0.14 TCGA-VQ-A8DL-01 19 19308961 19308962 - AGC RFXANK Nonsense_Mutation p.S162delins* 0.29 TCGA-VQ-A8DL-01 19 36832189 36832190 - TCT ZFP14 In_Frame_Ins p.K179dup 0.15 TCGA-VQ-A8DL-01 19 39328041 39328042 - AATG AC104534.3 Frame_Shift_Ins p.Y182Sfs*20 0.13 TCGA-VQ-A8DL-01 19 39521724 39521725 - CT FBXO27 Frame_Shift_Ins p.G173Rfs*38 0.26 TCGA-VQ-A8DL-01 19 45377717 45377717 C A PVRL2 Missense_Mutation p.Q342K 0.22 tolerated(0.61) benign(0.349) TCGA-VQ-A8DL-01 19 49469162 49469169 CAGGACAT - FTL Frame_Shift_Del p.D81Efs*4 0.27 TCGA-VQ-A8DL-01 19 53342833 53342833 G C ZNF468 3'UTR 0.16 TCGA-VQ-A8DL-01 19 54139886 54139886 G T DPRX Missense_Mutation p.A74S 0.19 tolerated(0.18) possibly_damaging(0.494) TCGA-VQ-A8DL-01 19 58773442 58773442 A C ZNF544 Missense_Mutation p.K490N 0.17 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8DL-01 19 59060419 59060420 - A TRIM28 Frame_Shift_Ins p.R492Qfs*9 0.17 TCGA-VQ-A8DL-01 1 100546214 100546214 A T HIAT1 Missense_Mutation p.Q422L 0.25 tolerated(0.27) benign(0.004) TCGA-VQ-A8DL-01 1 101362205 101362206 CT - SLC30A7 Frame_Shift_Del p.Y55Rfs*20 0.25 TCGA-VQ-A8DL-01 1 10700021 10700022 - CGC CASZ1 In_Frame_Ins p.A1419dup 0.27 TCGA-VQ-A8DL-01 1 111890366 111890367 - AGCT PIFO Frame_Shift_Ins p.V79Sfs*5 0.16 TCGA-VQ-A8DL-01 1 12025626 12025646 CTGGGAGGTGTTCAGCAACCC - PLOD1 In_Frame_Del p.W521_P527del 0.11 TCGA-VQ-A8DL-01 1 150445772 150445772 T G RPRD2 Missense_Mutation p.F1450V 0.22 deleterious_low_confidence(0) unknown(0) TCGA-VQ-A8DL-01 1 152327704 152327704 C A FLG2 Missense_Mutation p.S853I 0.21 unknown(0) TCGA-VQ-A8DL-01 1 154317558 154317559 - TGT ATP8B2 In_Frame_Ins p.L833dup 0.22 TCGA-VQ-A8DL-01 1 160267162 160267162 C T COPA Missense_Mutation p.R754H 0.23 deleterious(0) probably_damaging(0.954) TCGA-VQ-A8DL-01 1 160326468 160326468 A G NCSTN Missense_Mutation p.N573S 0.30 deleterious(0.03) benign(0.277) TCGA-VQ-A8DL-01 1 167847828 167847829 - AGTA ADCY10 Frame_Shift_Ins p.Y421Lfs*24 0.20 TCGA-VQ-A8DL-01 1 171076876 171076877 AC - FMO3 Frame_Shift_Del p.T128Hfs*2 0.18 TCGA-VQ-A8DL-01 1 173780343 173780343 T G CENPL Missense_Mutation p.E32A 0.27 tolerated(0.55) benign(0.006) TCGA-VQ-A8DL-01 1 178858804 178858805 - AG RALGPS2 Frame_Shift_Ins p.T409Rfs*19 0.14 TCGA-VQ-A8DL-01 1 182354489 182354491 CAC - GLUL Splice_Site p.X268_splice 0.14 TCGA-VQ-A8DL-01 1 192778212 192778213 - TA RGS2 Frame_Shift_Ins p.M5Ifs*30 0.23 TCGA-VQ-A8DL-01 1 196197391 196197391 A C KCNT2 Missense_Mutation p.V1124G 0.26 tolerated_low_confidence(0.36) benign(0.003) TCGA-VQ-A8DL-01 1 206822307 206822308 - T DYRK3 Frame_Shift_Ins p.*589L 0.21 TCGA-VQ-A8DL-01 1 207644426 207644426 G A CR2 Missense_Mutation p.G496D 0.21 tolerated(1) benign(0.001) TCGA-VQ-A8DL-01 1 40705774 40705777 TTCT - RLF Frame_Shift_Del p.S1801Hfs*7 0.23 TCGA-VQ-A8DL-01 1 42905657 42905658 - G ZMYND12 Frame_Shift_Ins p.Q155Pfs*11 0.10 TCGA-VQ-A8DL-01 1 43748922 43748923 - TT C1orf210 Frame_Shift_Ins p.T7Kfs*30 0.26 TCGA-VQ-A8DL-01 1 43916082 43916082 C G SZT2 Silent p.V3353V 0.13 TCGA-VQ-A8DL-01 1 54666084 54666085 - C MRPL37 Frame_Shift_Ins p.I58Hfs*81 0.24 TCGA-VQ-A8DL-01 1 68962676 68962681 TCTCCA - DEPDC1 Translation_Start_Site p.ME1_?2 0.18 TCGA-VQ-A8DL-01 20 18523712 18523724 CAGGAGGCTGCGG - SEC23B Frame_Shift_Del p.E522Cfs*2 0.26 TCGA-VQ-A8DL-01 20 47605052 47605053 - AGT ARFGEF2 Nonsense_Mutation p.Q796_Y797ins* 0.20 TCGA-VQ-A8DL-01 20 50342378 50342379 AG - ATP9A Frame_Shift_Del p.T104Lfs*16 0.18 TCGA-VQ-A8DL-01 20 60498692 60498692 G A CDH4 Missense_Mutation p.V520M 0.15 tolerated(0.23) benign(0.149) TCGA-VQ-A8DL-01 20 61296365 61296369 GGCAT - SLCO4A1 Frame_Shift_Del p.G401Vfs*150 0.11 TCGA-VQ-A8DL-01 21 36421296 36421296 A C RUNX1 5'UTR 0.50 TCGA-VQ-A8DL-01 22 29446678 29446678 G C ZNRF3 Missense_Mutation p.D837H 0.17 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-VQ-A8DL-01 22 50216844 50216849 GCCACC - BRD1 In_Frame_Del p.G373_G374del 0.19 TCGA-VQ-A8DL-01 22 50682868 50682869 - AGCT TUBGCP6 Frame_Shift_Ins p.F8Afs*7 0.29 TCGA-VQ-A8DL-01 2 166021007 166021008 - TA SCN3A Frame_Shift_Ins p.T166Ifs*7 0.20 TCGA-VQ-A8DL-01 2 224743393 224743393 G A WDFY1 Missense_Mutation p.H410Y 0.23 deleterious_low_confidence(0) possibly_damaging(0.727) TCGA-VQ-A8DL-01 2 231308929 231308930 - AG SP100 Frame_Shift_Ins p.V105Efs*34 0.27 TCGA-VQ-A8DL-01 2 234198948 234198954 AATGTGT - ATG16L1 Frame_Shift_Del p.C461* 0.23 TCGA-VQ-A8DL-01 2 42995060 42995070 GGCGATCACCT - HAAO Splice_Site p.X211_splice 0.27 TCGA-VQ-A8DL-01 2 60687597 60687609 TTCTCCAGGGTAC - BCL11A Frame_Shift_Del p.S813Nfs*3 0.16 TCGA-VQ-A8DL-01 2 86719276 86719277 - T KDM3A 3'UTR 0.29 TCGA-VQ-A8DL-01 2 88874956 88874957 - A EIF2AK3 Frame_Shift_Ins p.W682Lfs*7 0.23 TCGA-VQ-A8DL-01 3 101404713 101404713 C G RPL24 Silent p.R47R 0.21 TCGA-VQ-A8DL-01 3 107778384 107778385 AT - CD47 Frame_Shift_Del p.Y202Ffs*27 0.30 TCGA-VQ-A8DL-01 3 112989643 112989699 CACAGGTAACTACCTGATCATGCCCTCAGGGAACCTCCAGATTGTGAATGCCAGCCA - BOC Splice_Site p.X175_splice 0.22 TCGA-VQ-A8DL-01 3 158390232 158390249 CCTGGAGGCTGGGTAGTT - LXN In_Frame_Del p.N7_R12del 0.30 TCGA-VQ-A8DL-01 3 32525430 32525431 - AACA CMTM6 3'UTR 0.27 TCGA-VQ-A8DL-01 4 119951944 119951944 G T SYNPO2 Nonsense_Mutation p.E672* 0.29 TCGA-VQ-A8DL-01 4 134072318 134072319 - TT PCDH10 Frame_Shift_Ins p.C342Ffs*5 0.13 TCGA-VQ-A8DL-01 4 178283655 178283655 T A NEIL3 3'UTR 0.30 TCGA-VQ-A8DL-01 4 185320123 185320123 C - IRF2 Frame_Shift_Del p.V214Sfs*3 0.43 TCGA-VQ-A8DL-01 4 6302945 6302945 C A WFS1 Missense_Mutation p.P475T 0.23 deleterious(0.01) probably_damaging(0.992) TCGA-VQ-A8DL-01 4 71347114 71347114 C T MUC7 Missense_Mutation p.P218L 0.19 deleterious(0.02) unknown(0) TCGA-VQ-A8DL-01 5 112312608 112312608 T - DCP2 5'UTR 0.28 TCGA-VQ-A8DL-01 5 137259161 137259164 ATTC - PKD2L2 Frame_Shift_Del p.Y501* 0.12 TCGA-VQ-A8DL-01 5 140256803 140256803 G A PCDHA12 Silent p.P582P 0.28 TCGA-VQ-A8DL-01 5 140745573 140745573 C T PCDHGA5 Missense_Mutation p.T559M 0.22 deleterious_low_confidence(0.05) benign(0.046) TCGA-VQ-A8DL-01 5 177637645 177637645 A G HNRNPAB 3'UTR 0.29 TCGA-VQ-A8DL-01 5 177637646 177637646 C T HNRNPAB 3'UTR 0.29 TCGA-VQ-A8DL-01 5 453712 453715 TCAC - EXOC3 Frame_Shift_Del p.S198Wfs*58 0.29 TCGA-VQ-A8DL-01 5 73931865 73931866 - AGTT ENC1 Nonsense_Mutation p.C149* 0.33 TCGA-VQ-A8DL-01 5 95746490 95746490 G A PCSK1 Silent p.T361T 0.19 TCGA-VQ-A8DL-01 6 109802990 109802999 TTCCAGCATA - ZBTB24 Frame_Shift_Del p.Y77* 0.27 TCGA-VQ-A8DL-01 6 111686464 111686469 TTACCT - REV3L Splice_Site p.X2251_splice 0.21 TCGA-VQ-A8DL-01 6 11185596 11185616 AGTCACCTGCCGTGTCAGCGT - NEDD9 In_Frame_Del p.T762_T768del 0.39 TCGA-VQ-A8DL-01 6 11185795 11185795 G T NEDD9 Missense_Mutation p.A702D 0.25 tolerated(0.06) benign(0.072) TCGA-VQ-A8DL-01 6 11185798 11185798 C T NEDD9 Missense_Mutation p.S701N 0.24 tolerated(0.07) benign(0.007) TCGA-VQ-A8DL-01 6 30115318 30115321 AGGT - TRIM40 Splice_Site p.X201_splice 0.25 TCGA-VQ-A8DL-01 6 30131658 30131659 - AG TRIM15 Frame_Shift_Ins p.T68Rfs*71 0.19 TCGA-VQ-A8DL-01 6 31431702 31431703 - TAT HCP5 RNA 0.18 TCGA-VQ-A8DL-01 6 32134572 32134573 GC - EGFL8 Frame_Shift_Del p.L108Hfs*3 0.23 TCGA-VQ-A8DL-01 6 33281812 33281814 ACT - TAPBP In_Frame_Del p.K2_S3delinsT 0.13 TCGA-VQ-A8DL-01 6 46135602 46135605 GTAT - ENPP5 Frame_Shift_Del p.H132Lfs*12 0.29 TCGA-VQ-A8DL-01 6 7559468 7559468 G A DSP Silent p.Q144Q 0.37 TCGA-VQ-A8DL-01 7 141619259 141619259 C T OR9A4 Missense_Mutation p.T195M 0.28 tolerated(0.11) benign(0.097) TCGA-VQ-A8DL-01 7 44613197 44613197 C T DDX56 Silent p.L69L 0.28 TCGA-VQ-A8DL-01 7 72430407 72430414 AGGTTATT - TRIM74 Missense_Mutation 0.17 TCGA-VQ-A8DL-01 7 73118740 73118741 - GACT STX1A Frame_Shift_Ins p.I100Vfs*14 0.40 TCGA-VQ-A8DL-01 7 87537084 87537085 - T DBF4 Frame_Shift_Ins p.V545Cfs*12 0.19 TCGA-VQ-A8DL-01 8 121457710 121457713 GATG C MTBP Missense_Mutation 0.30 TCGA-VQ-A8DL-01 8 124335209 124335209 C T ATAD2 Missense_Mutation p.R1367H 0.15 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8DL-01 8 145278034 145278034 G - MROH1 Frame_Shift_Del p.I414Lfs*18 0.15 TCGA-VQ-A8DL-01 8 17794817 17794817 C T PCM1 Nonsense_Mutation p.Q91* 0.28 TCGA-VQ-A8DL-01 8 19250920 19250921 - TA SH2D4A Frame_Shift_Ins p.A382Mfs*112 0.25 TCGA-VQ-A8DL-01 8 24177792 24177799 AATATTAT - ADAM28 Frame_Shift_Del p.E207Vfs*5 0.21 TCGA-VQ-A8DL-01 8 29194858 29194859 - AT DUSP4 Frame_Shift_Ins p.C291Sfs*6 0.27 TCGA-VQ-A8DL-01 8 56864630 56864630 G A LYN Missense_Mutation p.R198Q 0.48 deleterious(0.01) benign(0.329) TCGA-VQ-A8DL-01 8 8887408 8887409 - AGCA ERI1 Frame_Shift_Ins p.V307Sfs*10 0.25 TCGA-VQ-A8DL-01 9 104313017 104313017 C G RNF20 Missense_Mutation p.L408V 0.16 tolerated(0.08) benign(0.364) TCGA-VQ-A8DL-01 9 131151586 131151587 - TG URM1 Frame_Shift_Ins p.V80Wfs*30 0.25 TCGA-VQ-A8DL-01 9 136270026 136270027 - TGC C9orf96 In_Frame_Ins p.L618dup 0.21 TCGA-VQ-A8DL-01 9 136337221 136337222 - CAG SLC2A6 In_Frame_Ins p.C482dup 0.28 TCGA-VQ-A8DL-01 9 139362892 139362892 A G SEC16A Silent p.Y1259Y 0.26 TCGA-VQ-A8DL-01 9 19380183 19380184 CC A RPS6 Intron 0.20 TCGA-VQ-A8DL-01 9 32420998 32420999 - T ACO1 Frame_Shift_Ins p.S316* 0.27 TCGA-VQ-A8DL-01 9 35664030 35664031 - GT ARHGEF39 Frame_Shift_Ins p.P150Tfs*16 0.24 TCGA-VQ-A8DL-01 X 106199760 106199760 G T MORC4 Missense_Mutation p.Q487K 0.20 tolerated(0.07) benign(0.196) TCGA-VQ-A8DL-01 X 107316531 107316532 - TTA VSIG1 In_Frame_Ins p.Y245dup 0.24 TCGA-VQ-A8DL-01 X 51487820 51487820 T C GSPT2 Silent p.C366C 0.28 TCGA-VQ-A8DL-01 X 54470970 54470970 G T TSR2 Missense_Mutation p.R188L 0.11 deleterious(0.02) probably_damaging(0.967) TCGA-VQ-A8DL-01 X 8433557 8433557 C A VCX3B Silent p.S22S 0.14 TCGA-VQ-A8DT-01 10 105727487 105727487 C T SLK 5'UTR 0.07 TCGA-VQ-A8DT-01 10 18331694 18331694 T C SLC39A12 Missense_Mutation p.F670L 0.09 tolerated(1) benign(0.002) TCGA-VQ-A8DT-01 10 20335934 20335934 G A PLXDC2 Missense_Mutation p.R154Q 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A8DT-01 10 38241487 38241487 G A ZNF25 Silent p.P313P 0.08 TCGA-VQ-A8DT-01 10 50955201 50955201 G A OGDHL Silent p.R347R 0.08 TCGA-VQ-A8DT-01 10 56077056 56077056 G A PCDH15 Missense_Mutation p.A284V 0.10 tolerated(0.11) benign(0.02) TCGA-VQ-A8DT-01 10 60573689 60573689 A C BICC1 Missense_Mutation p.S826R 0.06 tolerated(0.16) benign(0.009) TCGA-VQ-A8DT-01 10 61112139 61112139 G A FAM13C Missense_Mutation p.A72V 0.06 tolerated_low_confidence(0.05) benign(0) TCGA-VQ-A8DT-01 10 70101401 70101401 G A HNRNPH3 Missense_Mutation p.G279S 0.13 tolerated(0.61) unknown(0) TCGA-VQ-A8DT-01 10 72489861 72489861 C T ADAMTS14 Silent p.L320L 0.17 TCGA-VQ-A8DT-01 10 7269815 7269815 A G SFMBT2 Splice_Site p.X401_splice 0.07 TCGA-VQ-A8DT-01 11 10590070 10590070 A C LYVE1 Missense_Mutation p.C4G 0.18 tolerated(0.31) benign(0.163) TCGA-VQ-A8DT-01 11 10590071 10590071 C A LYVE1 Missense_Mutation p.R3S 0.16 tolerated(0.08) benign(0.005) TCGA-VQ-A8DT-01 11 113141064 113141064 A G NCAM1 Silent p.K811K 0.08 TCGA-VQ-A8DT-01 11 117973941 117973941 A G TMPRSS4 Missense_Mutation p.S95G 0.15 tolerated(0.32) benign(0.002) TCGA-VQ-A8DT-01 11 120178294 120178294 C - POU2F3 Frame_Shift_Del p.R295Afs*2 0.17 TCGA-VQ-A8DT-01 11 124412903 124412903 A C OR8B12 Silent p.S216S 0.29 TCGA-VQ-A8DT-01 11 15096663 15096663 T C CALCB Missense_Mutation p.L48P 0.08 deleterious(0.03) probably_damaging(1) TCGA-VQ-A8DT-01 11 18956352 18956352 T C MRGPRX1 5'UTR 0.10 TCGA-VQ-A8DT-01 11 36484265 36484265 G C PRR5L Silent p.L362L 0.14 TCGA-VQ-A8DT-01 11 49597964 49597964 A C RP11-707M1.1 RNA 0.14 TCGA-VQ-A8DT-01 11 5345227 5345227 A T OR51B2 Missense_Mutation p.F101I 0.08 deleterious(0.02) benign(0.027) TCGA-VQ-A8DT-01 11 5624592 5624592 T C TRIM6 Missense_Mutation p.I45T 0.12 deleterious(0) probably_damaging(0.992) TCGA-VQ-A8DT-01 11 62782146 62782146 G A SLC22A8 Silent p.C95C 0.10 TCGA-VQ-A8DT-01 11 64111692 64111692 G A CCDC88B Missense_Mutation p.S560N 0.07 tolerated_low_confidence(0.07) benign(0.018) TCGA-VQ-A8DT-01 11 76814081 76814081 G A OMP Missense_Mutation p.E66K 0.12 tolerated_low_confidence(0.33) benign(0.195) TCGA-VQ-A8DT-01 11 92532253 92532253 A C FAT3 Missense_Mutation p.K2025T 0.30 possibly_damaging(0.698) TCGA-VQ-A8DT-01 11 9606989 9606989 G A WEE1 Missense_Mutation p.G462D 0.20 deleterious(0) probably_damaging(1) TCGA-VQ-A8DT-01 11 977124 977124 C T AP2A2 Missense_Mutation p.A168V 0.13 deleterious(0) probably_damaging(0.994) TCGA-VQ-A8DT-01 12 10339069 10339069 T A TMEM52B Missense_Mutation p.L43Q 0.15 deleterious(0.04) benign(0.387) TCGA-VQ-A8DT-01 12 110788056 110788057 TG - ATP2A2 3'Flank 0.17 TCGA-VQ-A8DT-01 12 11461286 11461286 C A PRB4 Missense_Mutation p.G211C 0.14 deleterious_low_confidence(0) unknown(0) TCGA-VQ-A8DT-01 12 118519948 118519948 G A VSIG10 Silent p.T216T 0.28 TCGA-VQ-A8DT-01 12 20523120 20523120 C T PDE3A Missense_Mutation p.S301F 0.13 deleterious(0) probably_damaging(0.979) TCGA-VQ-A8DT-01 12 40681293 40681293 T G LRRK2 Missense_Mutation p.S881A 0.08 tolerated(0.68) benign(0.04) TCGA-VQ-A8DT-01 12 4735724 4735724 C A AKAP3 Missense_Mutation p.A782S 0.25 deleterious(0) benign(0.372) TCGA-VQ-A8DT-01 12 49050467 49050467 G A KANSL2 Intron 0.10 TCGA-VQ-A8DT-01 12 5154540 5154540 C T KCNA5 Silent p.R409R 0.19 TCGA-VQ-A8DT-01 12 52793795 52793795 C T KRT82 Missense_Mutation p.E306K 0.24 deleterious(0.02) possibly_damaging(0.589) TCGA-VQ-A8DT-01 12 56349564 56349564 C T PMEL Missense_Mutation p.G519R 0.25 tolerated(0.07) possibly_damaging(0.534) TCGA-VQ-A8DT-01 12 5915236 5915236 G A ANO2 Silent p.D320D 0.24 TCGA-VQ-A8DT-01 12 62147423 62147423 T A FAM19A2 Missense_Mutation p.N122Y 0.08 deleterious(0.01) probably_damaging(0.949) TCGA-VQ-A8DT-01 12 6982049 6982049 A G SPSB2 Missense_Mutation p.L6P 0.16 deleterious_low_confidence(0.03) benign(0.331) TCGA-VQ-A8DT-01 12 91572143 91572143 G A DCN Nonsense_Mutation p.R63* 0.13 TCGA-VQ-A8DT-01 13 23909221 23909222 - T SACS Frame_Shift_Ins p.R2932Tfs*7 0.12 TCGA-VQ-A8DT-01 13 25670425 25670425 A C PABPC3 Missense_Mutation p.K30T 0.22 deleterious(0.04) possibly_damaging(0.575) TCGA-VQ-A8DT-01 13 26787968 26787968 T A RNF6 Missense_Mutation p.N684I 0.14 deleterious_low_confidence(0) benign(0.08) TCGA-VQ-A8DT-01 13 29286850 29286850 C T SLC46A3 Missense_Mutation p.A343T 0.12 deleterious(0.01) benign(0.136) TCGA-VQ-A8DT-01 13 31715323 31715323 G A HSPH1 Missense_Mutation p.P597L 0.14 deleterious(0.02) probably_damaging(1) TCGA-VQ-A8DT-01 13 70456504 70456504 T C KLHL1 Missense_Mutation p.M380V 0.15 tolerated(0.06) benign(0.145) TCGA-VQ-A8DT-01 14 100357557 100357557 C A EML1 Missense_Mutation p.F199L 0.17 tolerated(0.16) benign(0.036) TCGA-VQ-A8DT-01 14 106208241 106208241 G C IGHG1 Missense_Mutation p.S220C 0.08 deleterious(0) probably_damaging(0.947) TCGA-VQ-A8DT-01 14 23945523 23945523 G A NGDN Missense_Mutation p.R207H 0.31 deleterious(0.01) probably_damaging(0.971) TCGA-VQ-A8DT-01 14 47120347 47120347 T G RPL10L Missense_Mutation p.K198T 0.30 deleterious(0.01) benign(0.056) TCGA-VQ-A8DT-01 14 50360633 50360633 A G ARF6 Missense_Mutation p.N60S 0.16 tolerated_low_confidence(0.07) benign(0.023) TCGA-VQ-A8DT-01 14 70989503 70989503 A C ADAM20 Missense_Mutation p.W708G 0.07 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8DT-01 14 91739143 91739143 C A CCDC88C Missense_Mutation p.Q1971H 0.15 tolerated(0.16) benign(0.013) TCGA-VQ-A8DT-01 14 96703417 96703417 C T BDKRB2 5'UTR 0.27 TCGA-VQ-A8DT-01 15 24923624 24923624 A G NPAP1 Silent p.Q870Q 0.15 TCGA-VQ-A8DT-01 15 30024870 30024870 T G TJP1 Missense_Mutation p.K629T 0.05 deleterious(0) probably_damaging(0.96) TCGA-VQ-A8DT-01 15 45408915 45408915 C A DUOXA2 Nonsense_Mutation p.S181* 0.15 TCGA-VQ-A8DT-01 15 45554245 45554245 G T SLC28A2 Missense_Mutation p.S68I 0.12 tolerated(0.09) benign(0.099) TCGA-VQ-A8DT-01 15 48826303 48826303 A C FBN1 Missense_Mutation p.L279R 0.14 benign(0.184) TCGA-VQ-A8DT-01 15 50154456 50154456 T C ATP8B4 Missense_Mutation p.T1095A 0.14 tolerated(0.11) benign(0.006) TCGA-VQ-A8DT-01 15 72057436 72057436 G T THSD4 Silent p.V889V 0.11 TCGA-VQ-A8DT-01 15 74703234 74703234 G A SEMA7A Missense_Mutation p.R578C 0.19 tolerated(0.16) possibly_damaging(0.868) TCGA-VQ-A8DT-01 15 79748527 79748527 A C KIAA1024 Missense_Mutation p.K13T 0.15 tolerated(0.11) benign(0.193) TCGA-VQ-A8DT-01 15 81611765 81611765 G A STARD5 Silent p.S105S 0.11 TCGA-VQ-A8DT-01 16 31092389 31092389 G A ZNF646 Missense_Mutation p.A1582T 0.16 tolerated(0.28) benign(0.209) TCGA-VQ-A8DT-01 16 31425831 31425831 C T ITGAD Missense_Mutation p.R686C 0.18 deleterious(0) probably_damaging(1) TCGA-VQ-A8DT-01 16 4242551 4242551 A G SRL Missense_Mutation p.I342T 0.06 tolerated(0.17) possibly_damaging(0.894) TCGA-VQ-A8DT-01 16 67763354 67763354 G A RANBP10 Missense_Mutation p.A394V 0.13 tolerated(0.3) benign(0.006) TCGA-VQ-A8DT-01 17 10214533 10214533 C T MYH13 Missense_Mutation p.D1515N 0.22 tolerated(0.09) probably_damaging(0.997) TCGA-VQ-A8DT-01 17 11671831 11671831 T G DNAH9 Missense_Mutation p.F2411C 0.09 probably_damaging(0.982) TCGA-VQ-A8DT-01 17 2595767 2595767 C T CLUH Missense_Mutation p.G1111R 0.20 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8DT-01 17 29214371 29214371 A C ATAD5 Missense_Mutation p.E1413D 0.20 tolerated(0.3) possibly_damaging(0.572) TCGA-VQ-A8DT-01 17 37872036 37872036 C A ERBB2 Missense_Mutation p.L453M 0.08 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8DT-01 17 41570095 41570095 C T DHX8 Nonsense_Mutation p.R184* 0.05 TCGA-VQ-A8DT-01 17 44952646 44952646 T C WNT9B Missense_Mutation p.F172L 0.25 deleterious(0.03) probably_damaging(0.995) TCGA-VQ-A8DT-01 17 46655265 46655265 G A HOXB4 Silent p.P139P 0.25 TCGA-VQ-A8DT-01 17 48069010 48069010 G A DLX3 Silent p.D245D 0.40 TCGA-VQ-A8DT-01 17 50149732 50149732 A G CA10 Missense_Mutation p.I28T 0.12 tolerated(1) benign(0.074) TCGA-VQ-A8DT-01 17 56492791 56492792 CT - RNF43 Frame_Shift_Del p.R49Sfs*25 0.23 TCGA-VQ-A8DT-01 17 58504090 58504090 G A C17orf64 Missense_Mutation p.R114Q 0.17 tolerated(0.23) benign(0.319) TCGA-VQ-A8DT-01 17 6902119 6902119 G A ALOX12 Missense_Mutation p.E169K 0.14 tolerated(0.09) benign(0.012) TCGA-VQ-A8DT-01 17 73493926 73493926 C T KIAA0195 Nonsense_Mutation p.Q1158* 0.14 TCGA-VQ-A8DT-01 17 7414819 7414819 C T POLR2A Missense_Mutation p.T1338M 0.15 probably_damaging(1) TCGA-VQ-A8DT-01 17 7578263 7578263 G A TP53 Nonsense_Mutation p.R196* 0.32 TCGA-VQ-A8DT-01 17 78321786 78321786 C T RNF213 Silent p.V3217V 0.10 TCGA-VQ-A8DT-01 18 22804900 22804900 C A ZNF521 Missense_Mutation p.K994N 0.11 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8DT-01 18 74092014 74092014 C T ZNF516 Missense_Mutation p.V686I 0.38 tolerated(0.39) benign(0) TCGA-VQ-A8DT-01 19 13409615 13409615 G A CACNA1A Silent p.S944S 0.40 TCGA-VQ-A8DT-01 19 14626640 14626640 G A DNAJB1 3'UTR 0.78 TCGA-VQ-A8DT-01 19 40521503 40521503 C A ZNF546 Missense_Mutation p.P776T 0.10 deleterious(0) possibly_damaging(0.787) TCGA-VQ-A8DT-01 19 41056160 41056160 G A SPTBN4 Missense_Mutation p.R1534Q 0.12 deleterious(0.01) benign(0.297) TCGA-VQ-A8DT-01 19 42479896 42479896 C T ATP1A3 Silent p.K729K 0.11 TCGA-VQ-A8DT-01 19 43258633 43258633 A G PSG8 Silent p.S365S 0.03 TCGA-VQ-A8DT-01 19 43420469 43420469 T C PSG6 Missense_Mutation p.I79V 0.14 deleterious(0.03) benign(0.05) TCGA-VQ-A8DT-01 19 43420470 43420470 G A PSG6 Silent p.Y78Y 0.13 TCGA-VQ-A8DT-01 19 4513473 4513473 C T PLIN4 Missense_Mutation p.G153S 0.26 tolerated(0.09) possibly_damaging(0.738) TCGA-VQ-A8DT-01 19 47844986 47844986 C T C5AR2 Silent p.A310A 0.19 TCGA-VQ-A8DT-01 19 48284413 48284413 G T SEPW1 Missense_Mutation p.A53S 0.03 tolerated(0.56) possibly_damaging(0.589) TCGA-VQ-A8DT-01 19 52468850 52468850 C A ZNF350 Nonsense_Mutation p.G286* 0.15 TCGA-VQ-A8DT-01 19 55814112 55814112 G A BRSK1 Missense_Mutation p.R302H 0.19 deleterious(0.03) possibly_damaging(0.522) TCGA-VQ-A8DT-01 19 57999234 57999234 G C ZNF419 5'UTR 0.12 TCGA-VQ-A8DT-01 19 58384382 58384382 T A ZNF814 Missense_Mutation p.R792S 0.16 tolerated(0.06) probably_damaging(0.982) TCGA-VQ-A8DT-01 19 58438416 58438416 C T ZNF418 Missense_Mutation p.C378Y 0.12 deleterious(0.03) benign(0.252) TCGA-VQ-A8DT-01 19 8159390 8159390 C T FBN3 Missense_Mutation p.E1949K 0.29 tolerated(0.07) benign(0.131) TCGA-VQ-A8DT-01 19 9070451 9070451 A C MUC16 Silent p.T5665T 0.11 TCGA-VQ-A8DT-01 1 103345384 103345384 A G COL11A1 Missense_Mutation p.F1710S 0.08 unknown(0) TCGA-VQ-A8DT-01 1 109514010 109514010 A C WDR47 3'UTR 0.18 TCGA-VQ-A8DT-01 1 152671677 152671677 C A LCE2A Missense_Mutation p.H100Q 0.05 deleterious_low_confidence(0.01) unknown(0) TCGA-VQ-A8DT-01 1 153652166 153652166 G C NPR1 Missense_Mutation p.E194D 0.16 tolerated(0.07) benign(0.002) TCGA-VQ-A8DT-01 1 156568787 156568787 G T GPATCH4 Missense_Mutation p.Q23K 0.11 deleterious(0.01) probably_damaging(0.993) TCGA-VQ-A8DT-01 1 158589973 158589973 G T SPTA1 Missense_Mutation p.S2135Y 0.07 tolerated(0.11) benign(0.424) TCGA-VQ-A8DT-01 1 180243539 180243539 C T LHX4 Missense_Mutation p.T333M 0.11 deleterious(0.01) benign(0.039) TCGA-VQ-A8DT-01 1 183097819 183097819 G T LAMC1 Nonsense_Mutation p.E1072* 0.08 TCGA-VQ-A8DT-01 1 196757435 196757435 A G CFHR3 Missense_Mutation p.K174E 0.16 tolerated(1) possibly_damaging(0.682) TCGA-VQ-A8DT-01 1 197403874 197403874 A C CRB1 Missense_Mutation p.I961L 0.10 tolerated(0.45) benign(0.006) TCGA-VQ-A8DT-01 1 21890601 21890601 C T ALPL Silent p.H180H 0.26 TCGA-VQ-A8DT-01 1 228479774 228479774 G T OBSCN Silent p.L3934L 0.04 TCGA-VQ-A8DT-01 1 240975304 240975304 A - RGS7 Frame_Shift_Del p.F332Lfs*7 0.27 TCGA-VQ-A8DT-01 1 242451704 242451705 - A PLD5 Frame_Shift_Ins p.S152Ffs*20 0.09 TCGA-VQ-A8DT-01 1 247654990 247654990 G T OR2W5 RNA 0.06 TCGA-VQ-A8DT-01 1 247835708 247835708 G T OR13G1 Nonsense_Mutation p.C212* 0.10 TCGA-VQ-A8DT-01 1 248005059 248005059 G T OR11L1 Missense_Mutation p.T47N 0.12 tolerated(0.09) benign(0.034) TCGA-VQ-A8DT-01 1 248005061 248005061 G T OR11L1 Silent p.I46I 0.12 TCGA-VQ-A8DT-01 1 248569304 248569304 A C OR2T1 Missense_Mutation p.Q3H 0.24 deleterious_low_confidence(0.03) benign(0.018) TCGA-VQ-A8DT-01 1 2938480 2938480 G A ACTRT2 Missense_Mutation p.R77H 0.16 tolerated(1) benign(0.103) TCGA-VQ-A8DT-01 20 23360551 23360551 C T NAPB Missense_Mutation p.E230K 0.07 deleterious(0.05) benign(0.214) TCGA-VQ-A8DT-01 20 50048859 50048859 C T NFATC2 Missense_Mutation p.G823R 0.19 deleterious(0.01) benign(0.298) TCGA-VQ-A8DT-01 20 5282999 5282999 A G PROKR2 Missense_Mutation p.L281P 0.12 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8DT-01 20 7895047 7895047 C T HAO1 Silent p.T103T 0.18 TCGA-VQ-A8DT-01 21 45838403 45838403 G A TRPM2 Silent p.Q1142Q 0.20 TCGA-VQ-A8DT-01 22 24133968 24133968 G A SMARCB1 Missense_Mutation p.R40Q 0.17 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8DT-01 22 32754243 32754243 A G RFPL3 Missense_Mutation p.K62R 0.04 tolerated(0.77) benign(0.004) TCGA-VQ-A8DT-01 22 38211688 38211688 C T GCAT Missense_Mutation p.P304L 0.22 deleterious(0.03) possibly_damaging(0.783) TCGA-VQ-A8DT-01 2 161143571 161143571 T G RBMS1 Missense_Mutation p.K222T 0.19 deleterious(0.02) probably_damaging(0.996) TCGA-VQ-A8DT-01 2 163002170 163002170 C T GCG Missense_Mutation p.R91H 0.07 tolerated(0.12) benign(0.028) TCGA-VQ-A8DT-01 2 178592453 178592453 C T PDE11A Missense_Mutation p.R659Q 0.14 deleterious(0) possibly_damaging(0.885) TCGA-VQ-A8DT-01 2 179248887 179248887 G A OSBPL6 Missense_Mutation p.R691H 0.20 tolerated(0.09) probably_damaging(0.947) TCGA-VQ-A8DT-01 2 179666973 179666973 C T TTN Missense_Mutation p.A63T 0.29 TCGA-VQ-A8DT-01 2 191550313 191550313 T C NAB1 Missense_Mutation p.S403P 0.06 tolerated_low_confidence(0.07) possibly_damaging(0.88) TCGA-VQ-A8DT-01 2 198360018 198360018 C A HSPD1 Missense_Mutation p.Q170H 0.13 deleterious(0) probably_damaging(0.986) TCGA-VQ-A8DT-01 2 202252501 202252501 T A TRAK2 Missense_Mutation p.I541F 0.07 tolerated(1) benign(0.003) TCGA-VQ-A8DT-01 2 21232976 21232976 T G APOB Missense_Mutation p.K2255T 0.11 benign(0.165) TCGA-VQ-A8DT-01 2 217724661 217724661 A G TNP1 Missense_Mutation p.Y33H 0.18 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-VQ-A8DT-01 2 220476497 220476497 A G STK11IP Missense_Mutation p.K770R 0.10 tolerated(0.22) benign(0.025) TCGA-VQ-A8DT-01 2 234775380 234775380 C T MSL3P1 RNA 0.29 TCGA-VQ-A8DT-01 2 237489675 237489675 G A ACKR3 Silent p.A189A 0.18 TCGA-VQ-A8DT-01 2 241569780 241569780 C T GPR35 Silent p.C168C 0.12 TCGA-VQ-A8DT-01 2 27591939 27591939 T C EIF2B4 Missense_Mutation p.R138G 0.11 tolerated(0.18) possibly_damaging(0.856) TCGA-VQ-A8DT-01 2 37265077 37265077 G A HEATR5B Missense_Mutation p.A1046V 0.15 deleterious(0.01) benign(0.138) TCGA-VQ-A8DT-01 2 65299659 65299659 G A CEP68 Missense_Mutation p.E477K 0.21 deleterious(0.01) probably_damaging(0.913) TCGA-VQ-A8DT-01 2 74783904 74783904 C A DOK1 Missense_Mutation p.P370Q 0.08 tolerated(0.14) benign(0.352) TCGA-VQ-A8DT-01 2 84785024 84785024 G A DNAH6 Missense_Mutation p.D590N 0.06 deleterious(0.01) possibly_damaging(0.677) TCGA-VQ-A8DT-01 2 9633029 9633029 C A ADAM17 Missense_Mutation p.V694L 0.14 deleterious(0.02) possibly_damaging(0.751) TCGA-VQ-A8DT-01 3 119133285 119133285 G A ARHGAP31 Missense_Mutation p.E837K 0.20 deleterious(0.04) benign(0.03) TCGA-VQ-A8DT-01 3 150460088 150460088 C T SIAH2 Missense_Mutation p.R272Q 0.07 tolerated(0.08) probably_damaging(0.993) TCGA-VQ-A8DT-01 3 150931377 150931377 A C P2RY14 Missense_Mutation p.F243C 0.11 deleterious(0.04) benign(0.038) TCGA-VQ-A8DT-01 3 183490334 183490334 G A YEATS2 Missense_Mutation p.S730N 0.14 deleterious_low_confidence(0) benign(0.147) TCGA-VQ-A8DT-01 3 32031555 32031555 T C ZNF860 Silent p.N328N 0.07 TCGA-VQ-A8DT-01 3 38768275 38768275 C A SCN10A Missense_Mutation p.S970I 0.15 tolerated(0.21) benign(0.188) TCGA-VQ-A8DT-01 3 41795958 41795958 C T ULK4 Missense_Mutation p.R739H 0.10 tolerated(0.1) benign(0.052) TCGA-VQ-A8DT-01 3 7721970 7721970 G A GRM7 Missense_Mutation p.V896I 0.13 tolerated_low_confidence(0.06) benign(0.015) TCGA-VQ-A8DT-01 3 85932568 85932568 T G CADM2 Silent p.T115T 0.08 TCGA-VQ-A8DT-01 4 155242017 155242017 C T DCHS2 Missense_Mutation p.D1057N 0.08 tolerated(0.08) benign(0.016) TCGA-VQ-A8DT-01 4 15826577 15826577 A T CD38 Missense_Mutation p.E146V 0.10 deleterious(0) probably_damaging(1) TCGA-VQ-A8DT-01 4 158282688 158282688 A C GRIA2 Splice_Site p.X764_splice 0.21 TCGA-VQ-A8DT-01 4 77272153 77272153 G A CCDC158 Missense_Mutation p.S887F 0.19 tolerated(0.08) probably_damaging(0.992) TCGA-VQ-A8DT-01 4 8288324 8288324 C T HTRA3 Silent p.S174S 0.18 TCGA-VQ-A8DT-01 4 96075719 96075719 A C BMPR1B Missense_Mutation p.K498N 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A8DT-01 5 1268653 1268653 G A TERT Missense_Mutation p.A855V 0.08 tolerated(0.31) benign(0.163) TCGA-VQ-A8DT-01 5 137525341 137525341 T C CDC23 Missense_Mutation p.K535R 0.07 tolerated(0.19) benign(0.224) TCGA-VQ-A8DT-01 5 13823445 13823445 A T DNAH5 Missense_Mutation p.I2205N 0.08 benign(0.308) TCGA-VQ-A8DT-01 5 140554692 140554692 C A PCDHB7 Missense_Mutation p.T759K 0.08 deleterious_low_confidence(0) benign(0.304) TCGA-VQ-A8DT-01 5 143540022 143540022 A C YIPF5 Missense_Mutation p.L238R 0.24 deleterious(0) possibly_damaging(0.81) TCGA-VQ-A8DT-01 5 143540025 143540025 T G YIPF5 Missense_Mutation p.Q237P 0.23 deleterious(0) probably_damaging(0.968) TCGA-VQ-A8DT-01 5 172377768 172377768 C T ERGIC1 Silent p.I274I 0.15 TCGA-VQ-A8DT-01 5 176301067 176301067 C T UNC5A Missense_Mutation p.R329W 0.23 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8DT-01 5 178506074 178506074 A G ZNF354C Missense_Mutation p.K214R 0.14 tolerated(0.06) benign(0.03) TCGA-VQ-A8DT-01 5 31305340 31305340 T G CDH6 Nonsense_Mutation p.Y353* 0.20 TCGA-VQ-A8DT-01 5 31313500 31313500 G A CDH6 Silent p.S443S 0.11 TCGA-VQ-A8DT-01 5 37816045 37816045 T G GDNF Missense_Mutation p.N132T 0.06 tolerated(0.3) possibly_damaging(0.617) TCGA-VQ-A8DT-01 5 5190152 5190152 G C ADAMTS16 Missense_Mutation p.L372F 0.04 deleterious(0.02) probably_damaging(0.999) TCGA-VQ-A8DT-01 5 678009 678009 C T TPPP Missense_Mutation p.R56Q 0.15 tolerated(0.45) probably_damaging(0.919) TCGA-VQ-A8DT-01 5 96111968 96111968 G T ERAP1 Intron 0.33 TCGA-VQ-A8DT-01 6 165715374 165715374 A C C6orf118 Missense_Mutation p.F146C 0.05 tolerated(0.17) possibly_damaging(0.51) TCGA-VQ-A8DT-01 6 26252142 26252142 G C HIST1H2BH Silent p.S88S 0.08 TCGA-VQ-A8DT-01 6 32170088 32170088 C T NOTCH4 Missense_Mutation p.G1174R 0.14 tolerated(0.16) benign(0.391) TCGA-VQ-A8DT-01 6 33259866 33259866 C T RGL2 3'UTR 0.16 TCGA-VQ-A8DT-01 6 39196862 39196862 G T KCNK5 Missense_Mutation p.T9N 0.16 deleterious(0.01) probably_damaging(0.983) TCGA-VQ-A8DT-01 6 64408379 64408379 G A PHF3 Missense_Mutation p.A956T 0.06 tolerated(0.1) benign(0.097) TCGA-VQ-A8DT-01 6 74111606 74111606 G C DDX43 Missense_Mutation p.G154A 0.10 tolerated(0.2) benign(0.013) TCGA-VQ-A8DT-01 6 93965571 93965571 T G EPHA7 Missense_Mutation p.D786A 0.08 deleterious(0) benign(0.114) TCGA-VQ-A8DT-01 7 100682460 100682460 G A MUC17 Missense_Mutation p.S2588N 0.13 probably_damaging(0.914) TCGA-VQ-A8DT-01 7 143701159 143701159 C T OR6B1 Missense_Mutation p.R24W 0.11 deleterious(0.02) possibly_damaging(0.487) TCGA-VQ-A8DT-01 7 21730449 21730449 G A DNAH11 Silent p.P2004P 0.17 TCGA-VQ-A8DT-01 7 30673482 30673482 A G GARS 3'UTR 0.12 TCGA-VQ-A8DT-01 7 44240765 44240765 A G YKT6 Missense_Mutation p.K11E 0.17 deleterious(0.03) benign(0.034) TCGA-VQ-A8DT-01 7 5952529 5952529 A C CCZ1 Missense_Mutation p.K300Q 0.08 tolerated(0.22) benign(0.04) TCGA-VQ-A8DT-01 7 6456529 6456529 G A DAGLB Silent p.Y414Y 0.16 TCGA-VQ-A8DT-01 7 74005281 74005281 C T GTF2IRD1 Silent p.I874I 0.21 TCGA-VQ-A8DT-01 7 91864944 91864944 G A KRIT1 Missense_Mutation p.H168Y 0.18 deleterious(0.03) probably_damaging(0.959) TCGA-VQ-A8DT-01 7 94540215 94540215 C T PPP1R9A Nonsense_Mutation p.R264* 0.11 TCGA-VQ-A8DT-01 7 95499229 95499229 A C DYNC1I1 Missense_Mutation p.T154P 0.07 tolerated(0.08) possibly_damaging(0.811) TCGA-VQ-A8DT-01 8 117950574 117950574 G A AARD Missense_Mutation p.R31H 0.10 tolerated(0.06) benign(0.212) TCGA-VQ-A8DT-01 8 133198392 133198392 G T KCNQ3 Silent p.V141V 0.11 TCGA-VQ-A8DT-01 8 22012906 22012906 A C LGI3 Missense_Mutation p.L93V 0.04 deleterious(0.01) probably_damaging(0.995) TCGA-VQ-A8DT-01 8 22069239 22069239 T G BMP1 Nonstop_Mutation p.*987Gext*45 0.06 TCGA-VQ-A8DT-01 8 26722347 26722347 A C ADRA1A Missense_Mutation p.V47G 0.09 deleterious(0) probably_damaging(1) TCGA-VQ-A8DT-01 8 2820009 2820009 C T CSMD1 Missense_Mutation p.G3203S 0.17 probably_damaging(1) TCGA-VQ-A8DT-01 8 38854597 38854597 G A ADAM9 Silent p.A5A 0.11 TCGA-VQ-A8DT-01 8 41542098 41542098 C T ANK1 Missense_Mutation p.D1542N 0.10 tolerated(0.1) benign(0.008) TCGA-VQ-A8DT-01 8 69351818 69351818 C A C8orf34 Missense_Mutation p.R138S 0.11 tolerated(0.12) benign(0.33) TCGA-VQ-A8DT-01 8 70498702 70498702 C T SULF1 Missense_Mutation p.R175C 0.05 deleterious(0.03) possibly_damaging(0.893) TCGA-VQ-A8DT-01 8 72965087 72965087 G A RP11-383H13.1 3'UTR 0.16 TCGA-VQ-A8DT-01 8 77616944 77616944 C T ZFHX4 Silent p.A207A 0.05 TCGA-VQ-A8DT-01 8 87540819 87540819 G T CPNE3 Missense_Mutation p.A16S 0.15 tolerated(0.11) benign(0.002) TCGA-VQ-A8DT-01 9 100845196 100845196 C T NANS Silent p.T313T 0.16 TCGA-VQ-A8DT-01 9 104433301 104433301 T A GRIN3A Missense_Mutation p.I465F 0.05 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8DT-01 9 108424911 108424911 G C TAL2 Missense_Mutation p.R45P 0.22 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8DT-01 9 113243711 113243711 G A SVEP1 Missense_Mutation p.P726S 0.29 probably_damaging(0.971) TCGA-VQ-A8DT-01 9 138908118 138908118 C T NACC2 Silent p.L348L 0.27 TCGA-VQ-A8DT-01 9 16436006 16436006 G A BNC2 Missense_Mutation p.S729L 0.17 deleterious(0.03) possibly_damaging(0.493) TCGA-VQ-A8DT-01 9 18928367 18928367 A C FAM154A Missense_Mutation p.C370G 0.15 tolerated(0.36) benign(0.06) TCGA-VQ-A8DT-01 9 72047570 72047570 C T APBA1 Missense_Mutation p.G775E 0.12 deleterious(0) probably_damaging(1) TCGA-VQ-A8DT-01 9 74840638 74840638 T G GDA Missense_Mutation p.L254V 0.06 deleterious(0.01) benign(0.071) TCGA-VQ-A8DT-01 X 102317797 102317797 G A BEX1 3'UTR 0.21 TCGA-VQ-A8DT-01 X 105449859 105449859 T A MUM1L1 Missense_Mutation p.L145H 0.15 tolerated(0.23) possibly_damaging(0.891) TCGA-VQ-A8DT-01 X 117883716 117883716 G A IL13RA1 Missense_Mutation p.D155N 0.41 tolerated(0.09) possibly_damaging(0.801) TCGA-VQ-A8DT-01 X 12906379 12906379 G T TLR7 Missense_Mutation p.D918Y 0.29 deleterious(0) possibly_damaging(0.781) TCGA-VQ-A8DT-01 X 151127121 151127121 T G GABRE Intron 0.45 TCGA-VQ-A8DT-01 X 30261023 30261023 C A MAGEB4 Nonsense_Mutation p.Y257* 0.43 TCGA-VQ-A8DT-01 X 54259259 54259259 T G WNK3 Missense_Mutation p.N1608T 0.11 deleterious(0.01) benign(0.011) TCGA-VQ-A8DT-01 X 55284959 55284959 C A PAGE3 Nonsense_Mutation p.E108* 0.07 TCGA-VQ-A8DT-01 X 7175538 7175569 CCTCTTCACAGCCTCTTCGGGAGGACTTCCCA - STS Frame_Shift_Del p.L103Rfs*2 0.40 TCGA-VQ-A8DT-01 X 73047073 73047073 G A XIST RNA 0.35 TCGA-VQ-A8DU-01 10 103826021 103826021 C T HPS6 Missense_Mutation p.P264S 0.08 tolerated(0.82) benign(0.352) TCGA-VQ-A8DU-01 10 11363207 11363207 C T CELF2 Silent p.G384G 0.19 TCGA-VQ-A8DU-01 10 14890640 14890640 C T HSPA14 Missense_Mutation p.A85V 0.21 tolerated(0.1) benign(0.044) TCGA-VQ-A8DU-01 10 16989291 16989291 A C CUBN Missense_Mutation p.V1762G 0.13 deleterious(0.01) possibly_damaging(0.507) TCGA-VQ-A8DU-01 10 72360526 72360526 C T PRF1 Missense_Mutation p.G45R 0.35 deleterious(0) probably_damaging(0.992) TCGA-VQ-A8DU-01 10 85984169 85984169 G C LRIT2 Missense_Mutation p.T271S 0.58 tolerated(0.07) probably_damaging(0.951) TCGA-VQ-A8DU-01 10 95719139 95719139 G A PIPSL RNA 0.51 TCGA-VQ-A8DU-01 11 102196269 102196269 G A BIRC3 Nonsense_Mutation p.W309* 0.17 TCGA-VQ-A8DU-01 11 107686678 107686678 T A SLC35F2 Missense_Mutation p.T42S 0.38 tolerated(0.31) benign(0.088) TCGA-VQ-A8DU-01 11 108350175 108350175 A T KDELC2 Nonsense_Mutation p.Y382* 0.41 TCGA-VQ-A8DU-01 11 124481510 124481510 C T PANX3 Missense_Mutation p.R20C 0.10 deleterious(0) possibly_damaging(0.61) TCGA-VQ-A8DU-01 11 125763954 125763954 A C PUS3 Missense_Mutation p.V391G 0.37 deleterious(0.04) benign(0.001) TCGA-VQ-A8DU-01 11 20652345 20652345 G A SLC6A5 Silent p.E536E 0.22 TCGA-VQ-A8DU-01 11 26582672 26582672 T G MUC15 Missense_Mutation p.E342D 0.35 tolerated(0.48) benign(0.005) TCGA-VQ-A8DU-01 11 28119199 28119199 C A KIF18A Missense_Mutation p.R99L 0.08 deleterious(0) benign(0.262) TCGA-VQ-A8DU-01 11 30033580 30033580 G A KCNA4 Missense_Mutation p.R216C 0.29 deleterious(0.02) probably_damaging(0.997) TCGA-VQ-A8DU-01 11 3797122 3797122 A T NUP98 Missense_Mutation p.I162N 0.24 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8DU-01 11 4470882 4470882 T A OR52K2 Missense_Mutation p.F105I 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-VQ-A8DU-01 11 4567337 4567337 T G OR52M1 Missense_Mutation p.L306R 0.30 deleterious(0) possibly_damaging(0.677) TCGA-VQ-A8DU-01 11 56127754 56127754 A G OR8J1 Missense_Mutation p.E11G 0.22 deleterious(0.01) possibly_damaging(0.616) TCGA-VQ-A8DU-01 11 63078485 63078485 A C SLC22A10 Missense_Mutation p.K535N 0.33 tolerated(0.05) benign(0.03) TCGA-VQ-A8DU-01 11 67414321 67414321 A T ACY3 Missense_Mutation p.V65E 0.18 deleterious(0) possibly_damaging(0.637) TCGA-VQ-A8DU-01 11 72422095 72422095 C T ARAP1 Missense_Mutation p.R395Q 0.35 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8DU-01 11 95555233 95555233 T G CEP57 Intron 0.42 TCGA-VQ-A8DU-01 12 117655960 117655960 G A NOS1 Nonsense_Mutation p.R1428* 0.57 TCGA-VQ-A8DU-01 12 4919303 4919303 C T KCNA6 Silent p.G32G 0.28 TCGA-VQ-A8DU-01 12 6230433 6230433 C T VWF Missense_Mutation p.V43I 0.25 tolerated(1) benign(0.002) TCGA-VQ-A8DU-01 12 988814 988814 C A WNK1 Missense_Mutation p.P817T 0.30 deleterious(0.02) probably_damaging(0.971) TCGA-VQ-A8DU-01 13 20426233 20426233 C A ZMYM5 Missense_Mutation p.D30Y 0.22 deleterious_low_confidence(0) possibly_damaging(0.804) TCGA-VQ-A8DU-01 13 25672261 25672261 T A PABPC3 3'UTR 0.17 TCGA-VQ-A8DU-01 13 58240632 58240632 A T PCDH17 Missense_Mutation p.M866L 0.13 tolerated(0.72) benign(0.002) TCGA-VQ-A8DU-01 14 106845513 106845513 T G IGHV3-35 Missense_Mutation p.N54T 0.23 tolerated_low_confidence(0.32) benign(0.009) TCGA-VQ-A8DU-01 14 23894183 23894183 T A MYH7 Missense_Mutation p.K825M 0.26 deleterious(0) probably_damaging(1) TCGA-VQ-A8DU-01 14 76427345 76427345 T C TGFB3 Missense_Mutation p.H334R 0.25 deleterious(0) possibly_damaging(0.825) TCGA-VQ-A8DU-01 15 34080491 34080491 A C RYR3 Missense_Mutation p.K3221T 0.14 probably_damaging(0.999) TCGA-VQ-A8DU-01 15 35045156 35045156 C T GJD2 Silent p.E163E 0.40 TCGA-VQ-A8DU-01 15 41372020 41372020 C T INO80 Missense_Mutation p.R337H 0.29 tolerated(0.06) benign(0.084) TCGA-VQ-A8DU-01 15 67457389 67457389 C T SMAD3 Silent p.C121C 0.29 TCGA-VQ-A8DU-01 15 79292108 79292108 C T RASGRF1 Missense_Mutation p.R924Q 0.25 deleterious(0.02) possibly_damaging(0.462) TCGA-VQ-A8DU-01 15 90226910 90226910 G A PEX11A Nonsense_Mutation p.R148* 0.27 TCGA-VQ-A8DU-01 15 91795744 91795744 C A SV2B Missense_Mutation p.H260N 0.15 tolerated(0.1) probably_damaging(0.934) TCGA-VQ-A8DU-01 16 10721581 10721581 C T TEKT5 Silent p.T439T 0.43 TCGA-VQ-A8DU-01 17 10352331 10352331 T G MYH4 Missense_Mutation p.E1405D 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-VQ-A8DU-01 17 17152314 17152314 C T COPS3 Missense_Mutation p.D355N 0.05 deleterious(0.03) benign(0.327) TCGA-VQ-A8DU-01 17 26961875 26961875 T C KIAA0100 Silent p.L910L 0.46 TCGA-VQ-A8DU-01 17 37441743 37441743 A G FBXL20 Missense_Mutation p.L161P 0.20 deleterious(0) probably_damaging(0.98) TCGA-VQ-A8DU-01 17 48680409 48680409 G A CACNA1G Missense_Mutation p.A1340T 0.40 tolerated(0.23) possibly_damaging(0.705) TCGA-VQ-A8DU-01 17 6599064 6599064 A G SLC13A5 Missense_Mutation p.W346R 0.21 deleterious(0.01) benign(0.053) TCGA-VQ-A8DU-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.90 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8DU-01 17 77042735 77042735 C T C1QTNF1 Missense_Mutation p.P85L 0.41 deleterious(0.05) benign(0.007) TCGA-VQ-A8DU-01 17 7945810 7945810 G A ALOX15B Splice_Site p.X191_splice 0.40 TCGA-VQ-A8DU-01 18 19263897 19263897 G A ABHD3 Missense_Mutation p.A180V 0.24 deleterious(0.05) possibly_damaging(0.529) TCGA-VQ-A8DU-01 18 22805265 22805265 C T ZNF521 Missense_Mutation p.D873N 0.28 tolerated(0.27) possibly_damaging(0.899) TCGA-VQ-A8DU-01 18 30913323 30913323 G T CCDC178 Missense_Mutation p.Q232K 0.44 tolerated(0.19) benign(0.045) TCGA-VQ-A8DU-01 18 46284760 46284760 G A CTIF Missense_Mutation p.R352Q 0.29 deleterious(0.01) probably_damaging(0.959) TCGA-VQ-A8DU-01 19 12502395 12502395 T C ZNF799 Missense_Mutation p.R273G 0.28 deleterious(0.02) probably_damaging(0.982) TCGA-VQ-A8DU-01 19 20229964 20229964 C A ZNF90 Missense_Mutation p.A534E 0.11 tolerated(1) benign(0.003) TCGA-VQ-A8DU-01 19 23543163 23543163 T G ZNF91 Missense_Mutation p.K873T 0.20 deleterious(0.01) possibly_damaging(0.775) TCGA-VQ-A8DU-01 19 30935240 30935240 G A ZNF536 Silent p.S257S 0.08 TCGA-VQ-A8DU-01 19 3613162 3613162 G C CACTIN Missense_Mutation p.S560R 0.12 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8DU-01 19 44604975 44604975 G A ZNF224 Missense_Mutation p.V13M 0.21 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8DU-01 19 4511646 4511646 A C PLIN4 Missense_Mutation p.L762V 0.32 tolerated(1) benign(0.001) TCGA-VQ-A8DU-01 19 55143050 55143050 A G LILRB1 Missense_Mutation p.E57G 0.61 deleterious(0.05) benign(0.008) TCGA-VQ-A8DU-01 19 8976825 8976825 A C MUC16 Missense_Mutation p.F14081V 0.28 probably_damaging(0.995) TCGA-VQ-A8DU-01 19 9048384 9048384 A G MUC16 Missense_Mutation p.S11083P 0.50 possibly_damaging(0.506) TCGA-VQ-A8DU-01 19 9868341 9868341 G A ZNF846 Missense_Mutation p.T471M 0.19 deleterious(0) benign(0.304) TCGA-VQ-A8DU-01 1 110032957 110032957 G A ATXN7L2 Missense_Mutation p.R434Q 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-VQ-A8DU-01 1 117516894 117516894 C T PTGFRN Silent p.L706L 0.16 TCGA-VQ-A8DU-01 1 150471768 150471768 A C TARS2 Missense_Mutation p.K539T 0.16 deleterious(0) probably_damaging(0.938) TCGA-VQ-A8DU-01 1 151110218 151110218 T C SEMA6C Missense_Mutation p.E242G 0.22 deleterious(0) probably_damaging(0.979) TCGA-VQ-A8DU-01 1 156844188 156844188 G A NTRK1 Silent p.P397P 0.22 TCGA-VQ-A8DU-01 1 157895826 157895826 C T RP11-451O13.1 RNA 0.47 TCGA-VQ-A8DU-01 1 158746998 158746998 T G OR6N2 Missense_Mutation p.K143T 0.24 deleterious(0.03) possibly_damaging(0.635) TCGA-VQ-A8DU-01 1 166904577 166904577 G A ILDR2 Missense_Mutation p.P281S 0.14 tolerated(0.06) probably_damaging(0.998) TCGA-VQ-A8DU-01 1 184042038 184042038 A G TSEN15 3'UTR 0.16 TCGA-VQ-A8DU-01 1 196670529 196670529 A G CFH Intron 0.28 TCGA-VQ-A8DU-01 1 22211058 22211058 C G HSPG2 Missense_Mutation p.Q539H 0.19 benign(0.002) TCGA-VQ-A8DU-01 1 226925047 226925047 C A ITPKB Missense_Mutation p.R38M 0.42 deleterious_low_confidence(0.03) benign(0.053) TCGA-VQ-A8DU-01 1 243579011 243579011 A T SDCCAG8 Nonsense_Mutation p.K542* 0.14 TCGA-VQ-A8DU-01 1 34329841 34329841 G A HMGB4 Missense_Mutation p.V17I 0.19 tolerated(0.35) benign(0.007) TCGA-VQ-A8DU-01 1 6145275 6145275 T C KCNAB2 Missense_Mutation p.V131A 0.20 tolerated(0.2) benign(0.134) TCGA-VQ-A8DU-01 1 67292531 67292531 C A WDR78 Missense_Mutation p.V771L 0.30 tolerated(0.12) benign(0.296) TCGA-VQ-A8DU-01 1 99422223 99422223 A C LPPR5 Missense_Mutation p.I104M 0.34 deleterious(0.03) benign(0.031) TCGA-VQ-A8DU-01 1 99767366 99767366 C T LPPR4 Silent p.C293C 0.36 TCGA-VQ-A8DU-01 20 29965225 29965225 G A DEFB118 3'Flank 0.25 TCGA-VQ-A8DU-01 20 42744481 42744481 G C JPH2 Missense_Mutation p.P612A 0.14 deleterious(0.01) benign(0) TCGA-VQ-A8DU-01 22 20800941 20800941 G A KLHL22 Missense_Mutation p.T443M 0.64 deleterious(0.04) possibly_damaging(0.451) TCGA-VQ-A8DU-01 22 41605654 41605654 A T L3MBTL2 Intron 0.26 TCGA-VQ-A8DU-01 2 130951910 130951910 A T TUBA3E Missense_Mutation p.F169I 0.15 deleterious_low_confidence(0.01) benign(0.051) TCGA-VQ-A8DU-01 2 152534446 152534446 A C NEB Missense_Mutation p.L1171V 0.24 probably_damaging(0.998) TCGA-VQ-A8DU-01 2 163360987 163360987 T C KCNH7 Missense_Mutation p.D365G 0.15 deleterious(0) benign(0.305) TCGA-VQ-A8DU-01 2 165950924 165950924 A C SCN3A Missense_Mutation p.L1499R 0.32 deleterious(0.01) possibly_damaging(0.826) TCGA-VQ-A8DU-01 2 168107004 168107004 G A XIRP2 Missense_Mutation p.M3034I 0.06 possibly_damaging(0.641) TCGA-VQ-A8DU-01 2 17697694 17697694 C T RAD51AP2 Silent p.K663K 0.12 TCGA-VQ-A8DU-01 2 179452782 179452782 G A TTN Missense_Mutation p.R21118W 0.21 TCGA-VQ-A8DU-01 2 179484726 179484726 A C TTN Missense_Mutation p.L15473R 0.57 TCGA-VQ-A8DU-01 2 180819008 180819008 C G CWC22 Missense_Mutation p.R538P 0.27 deleterious(0) possibly_damaging(0.853) TCGA-VQ-A8DU-01 2 190618643 190618643 A G OSGEPL1 Missense_Mutation p.L321P 0.16 deleterious(0) probably_damaging(0.979) TCGA-VQ-A8DU-01 2 201756838 201756838 C T NIF3L1 Missense_Mutation p.P58S 0.13 deleterious(0) probably_damaging(1) TCGA-VQ-A8DU-01 2 231090555 231090555 A C SP140 5'UTR 0.10 TCGA-VQ-A8DU-01 2 231174744 231174744 G A SP140 Missense_Mutation p.E722K 0.05 tolerated(0.07) probably_damaging(0.99) TCGA-VQ-A8DU-01 2 231326099 231326099 A G SP100 Missense_Mutation p.T315A 0.08 tolerated(0.23) benign(0.388) TCGA-VQ-A8DU-01 2 234628145 234628145 T G UGT1A4 Missense_Mutation p.F227V 0.17 tolerated(0.53) benign(0.001) TCGA-VQ-A8DU-01 2 237172985 237172985 A G ASB18 Missense_Mutation p.S2P 0.18 deleterious(0) probably_damaging(0.987) TCGA-VQ-A8DU-01 2 39029991 39029991 G A DHX57 Nonsense_Mutation p.R1295* 0.30 TCGA-VQ-A8DU-01 2 48027868 48027868 T C MSH6 Missense_Mutation p.F916L 0.32 deleterious(0) probably_damaging(0.994) TCGA-VQ-A8DU-01 2 50280557 50280557 A C NRXN1 Missense_Mutation p.V1367G 0.26 deleterious(0.01) probably_damaging(0.967) TCGA-VQ-A8DU-01 2 85571153 85571155 ACC - RETSAT In_Frame_Del p.V501del 0.16 TCGA-VQ-A8DU-01 2 9631238 9631238 G A ADAM17 Missense_Mutation p.H709Y 0.19 tolerated(1) benign(0.005) TCGA-VQ-A8DU-01 2 98996664 98996664 G A CNGA3 Missense_Mutation p.R81H 0.12 deleterious(0.03) benign(0.005) TCGA-VQ-A8DU-01 3 101484061 101484061 A G CEP97 Missense_Mutation p.H755R 0.21 tolerated(0.07) benign(0.007) TCGA-VQ-A8DU-01 3 113798794 113798794 G A QTRTD1 Missense_Mutation p.C275Y 0.44 deleterious(0) benign(0.217) TCGA-VQ-A8DU-01 3 169998099 169998099 A C PRKCI Missense_Mutation p.S264R 0.20 deleterious(0.01) possibly_damaging(0.452) TCGA-VQ-A8DU-01 3 23997559 23997559 C T NR1D2 Silent p.V105V 0.07 TCGA-VQ-A8DU-01 3 5024815 5024815 C T BHLHE40 Missense_Mutation p.T226I 0.11 deleterious(0) possibly_damaging(0.87) TCGA-VQ-A8DU-01 3 52729033 52729033 C G GLT8D1 Missense_Mutation p.R315P 0.04 deleterious(0.02) probably_damaging(0.996) TCGA-VQ-A8DU-01 3 89391029 89391029 A C EPHA3 Missense_Mutation p.K365N 0.25 deleterious(0.01) possibly_damaging(0.528) TCGA-VQ-A8DU-01 4 113574392 113574392 G A LARP7 Missense_Mutation p.G533S 0.19 deleterious(0) probably_damaging(1) TCGA-VQ-A8DU-01 4 153245339 153245339 G A FBXW7 Nonsense_Mutation p.Q618* 0.50 TCGA-VQ-A8DU-01 4 155236958 155236958 T C DCHS2 Silent p.K1279K 0.25 TCGA-VQ-A8DU-01 4 186324664 186324664 T G UFSP2 Missense_Mutation p.Q436P 0.17 tolerated(0.12) benign(0.022) TCGA-VQ-A8DU-01 4 52944993 52944993 T C SPATA18 Silent p.F371F 0.28 TCGA-VQ-A8DU-01 4 83626457 83626457 G A SCD5 Silent p.V114V 0.79 TCGA-VQ-A8DU-01 5 131530630 131530630 C - P4HA2 Frame_Shift_Del p.G509Afs*18 0.12 TCGA-VQ-A8DU-01 5 140222111 140222111 A C PCDHA8 Missense_Mutation p.K402T 0.05 deleterious_low_confidence(0) benign(0.339) TCGA-VQ-A8DU-01 5 37010243 37010243 A G NIPBL Silent p.A1492A 0.09 TCGA-VQ-A8DU-01 5 9066718 9066718 T G SEMA5A Missense_Mutation p.K705T 0.16 tolerated(0.06) probably_damaging(0.978) TCGA-VQ-A8DU-01 6 107088346 107088346 A - QRSL1 Frame_Shift_Del p.K50Nfs*19 0.44 TCGA-VQ-A8DU-01 6 109311940 109311940 A C SESN1 Silent p.L444L 0.41 TCGA-VQ-A8DU-01 6 109814755 109814755 G A AK9 Silent p.S1851S 0.20 TCGA-VQ-A8DU-01 6 114281095 114281095 C T HDAC2 Missense_Mutation p.G47D 0.13 tolerated(0.06) probably_damaging(0.949) TCGA-VQ-A8DU-01 6 117127959 117127959 A G GPRC6A Silent p.D303D 0.18 TCGA-VQ-A8DU-01 6 118635248 118635248 T C SLC35F1 Missense_Mutation p.S354P 0.17 tolerated(0.09) possibly_damaging(0.808) TCGA-VQ-A8DU-01 6 131995537 131995537 C T ENPP3 Intron 0.19 TCGA-VQ-A8DU-01 6 28093468 28093468 C G ZSCAN16 Missense_Mutation p.L83V 0.15 deleterious(0) possibly_damaging(0.632) TCGA-VQ-A8DU-01 6 30571951 30571951 G A PPP1R10 Missense_Mutation p.R448W 0.22 tolerated(0.05) benign(0.013) TCGA-VQ-A8DU-01 6 47976565 47976565 G C PTCHD4 Missense_Mutation p.L238V 0.40 tolerated(1) benign(0.019) TCGA-VQ-A8DU-01 6 55360371 55360371 T C HMGCLL1 Missense_Mutation p.E244G 0.19 deleterious(0) probably_damaging(1) TCGA-VQ-A8DU-01 6 57512657 57512657 A G PRIM2 3'UTR 0.08 TCGA-VQ-A8DU-01 6 75899318 75899318 A C COL12A1 Missense_Mutation p.L203R 0.20 probably_damaging(0.999) TCGA-VQ-A8DU-01 6 90572093 90572093 G T CASP8AP2 RNA 0.22 TCGA-VQ-A8DU-01 7 126079090 126079090 C A GRM8 3'UTR 0.19 TCGA-VQ-A8DU-01 7 135377115 135377115 G A SLC13A4 Silent p.T392T 0.46 TCGA-VQ-A8DU-01 7 140107616 140107616 G A RAB19 Missense_Mutation p.R57H 0.05 tolerated(0.09) benign(0.262) TCGA-VQ-A8DU-01 7 142562155 142562155 G A EPHB6 Silent p.R199R 0.15 TCGA-VQ-A8DU-01 7 15433791 15433791 A C AGMO Missense_Mutation p.L208R 0.08 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8DU-01 7 37988614 37988614 G A EPDR1 Missense_Mutation p.V148I 0.62 deleterious(0.04) benign(0.206) TCGA-VQ-A8DU-01 7 40277264 40277264 G A SUGCT Missense_Mutation p.R179Q 0.27 deleterious(0.03) probably_damaging(0.964) TCGA-VQ-A8DU-01 7 43548708 43548708 A C HECW1 Missense_Mutation p.N1336T 0.25 deleterious(0) probably_damaging(0.983) TCGA-VQ-A8DU-01 7 48312054 48312054 T A ABCA13 Missense_Mutation p.S931T 0.26 benign(0.037) TCGA-VQ-A8DU-01 7 71036358 71036358 G A WBSCR17 Missense_Mutation p.G351R 0.40 deleterious(0) possibly_damaging(0.735) TCGA-VQ-A8DU-01 8 114111054 114111054 A T CSMD3 Missense_Mutation p.F283Y 0.23 deleterious(0.01) possibly_damaging(0.89) TCGA-VQ-A8DU-01 8 11996204 11996204 A C USP17L2 Silent p.S22S 0.16 TCGA-VQ-A8DU-01 8 121282391 121282391 A C COL14A1 Missense_Mutation p.K1064T 0.20 tolerated(0.33) possibly_damaging(0.751) TCGA-VQ-A8DU-01 8 17613147 17613147 T G MTUS1 Missense_Mutation p.D57A 0.27 deleterious(0) possibly_damaging(0.869) TCGA-VQ-A8DU-01 8 3432500 3432500 A T CSMD1 Nonsense_Mutation p.C437* 0.37 TCGA-VQ-A8DU-01 8 35647963 35647963 T C UNC5D Missense_Mutation p.L915P 0.26 deleterious(0) probably_damaging(1) TCGA-VQ-A8DU-01 8 77616403 77616403 T G ZFHX4 Missense_Mutation p.L27R 0.56 possibly_damaging(0.883) TCGA-VQ-A8DU-01 8 86047189 86047189 G T LRRCC1 Silent p.L692L 0.20 TCGA-VQ-A8DU-01 8 87543432 87543432 G C CPNE3 Missense_Mutation p.R121T 0.16 tolerated(0.06) benign(0.002) TCGA-VQ-A8DU-01 9 103339030 103339030 C G TMEFF1 3'UTR 0.28 TCGA-VQ-A8DU-01 9 111617444 111617444 T C ACTL7B Missense_Mutation p.K256R 0.11 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8DU-01 9 115652226 115652226 C T SLC46A2 Missense_Mutation p.V246M 0.19 tolerated(0.09) benign(0.083) TCGA-VQ-A8DU-01 9 128434607 128434607 G A MAPKAP1 Missense_Mutation p.R83C 0.16 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8DU-01 9 133954556 133954556 A C LAMC3 Missense_Mutation p.E1266D 0.25 tolerated(0.25) benign(0.01) TCGA-VQ-A8DU-01 9 136310144 136310144 G A ADAMTS13 Missense_Mutation p.G861R 0.14 tolerated(0.53) benign(0.005) TCGA-VQ-A8DU-01 9 17226283 17226283 C G CNTLN Missense_Mutation p.Q178E 0.19 deleterious(0) probably_damaging(0.91) TCGA-VQ-A8DU-01 9 84609975 84609975 T G SPATA31D1 Silent p.T1530T 0.17 TCGA-VQ-A8DU-01 X 107978752 107978752 C T IRS4 Missense_Mutation p.V275M 0.28 deleterious(0.02) probably_damaging(0.997) TCGA-VQ-A8DU-01 X 108641869 108641869 A G GUCY2F Silent p.S728S 0.46 TCGA-VQ-A8DU-01 X 113965795 113965795 G C HTR2C Missense_Mutation p.G43A 0.38 tolerated(0.5) benign(0.054) TCGA-VQ-A8DU-01 X 130411040 130411040 C T IGSF1 Silent p.P832P 0.32 TCGA-VQ-A8DU-01 X 140984902 140984902 G T MAGEC3 Missense_Mutation p.R453M 0.38 deleterious(0.03) benign(0.139) TCGA-VQ-A8DU-01 X 150912843 150912843 C T CNGA2 Missense_Mutation p.T623M 0.27 tolerated(0.05) possibly_damaging(0.614) TCGA-VQ-A8DU-01 X 40551964 40551964 C T MED14 Missense_Mutation p.R614H 0.07 tolerated(0.08) benign(0.062) TCGA-VQ-A8DU-01 X 64936751 64936751 G C MSN Missense_Mutation p.Q28H 0.29 deleterious(0.03) possibly_damaging(0.598) TCGA-VQ-A8DU-01 X 65252554 65252554 A C VSIG4 Silent p.G150G 0.25 TCGA-VQ-A8DV-01 10 55826606 55826606 T C PCDH15 Missense_Mutation p.N711D 0.70 deleterious(0.02) probably_damaging(0.987) TCGA-VQ-A8DV-01 10 61941167 61941167 G A ANK3 Missense_Mutation p.H702Y 0.40 probably_damaging(0.999) TCGA-VQ-A8DV-01 10 85912061 85912061 G T GHITM Missense_Mutation p.R332L 0.16 deleterious(0) possibly_damaging(0.908) TCGA-VQ-A8DV-01 11 12315438 12315438 C T MICALCL Missense_Mutation p.R154W 0.10 tolerated(0.13) benign(0.001) TCGA-VQ-A8DV-01 11 129827653 129827653 C T PRDM10 Silent p.V74V 0.32 TCGA-VQ-A8DV-01 11 1959711 1959711 C T TNNT3 Missense_Mutation p.R256C 0.17 deleterious(0) benign(0.021) TCGA-VQ-A8DV-01 11 34167777 34167777 A C NAT10 3'UTR 0.55 TCGA-VQ-A8DV-01 11 5475196 5475196 C T OR51I2 Missense_Mutation p.P160S 0.32 deleterious(0.01) possibly_damaging(0.887) TCGA-VQ-A8DV-01 11 55065031 55065032 - T TRIM51HP RNA 0.50 TCGA-VQ-A8DV-01 11 60637112 60637112 T C ZP1 Missense_Mutation p.S141P 0.30 tolerated(0.27) benign(0.002) TCGA-VQ-A8DV-01 11 822474 822474 G A PNPLA2 Silent p.S188S 0.73 TCGA-VQ-A8DV-01 12 11214002 11214002 T A TAS2R46 Missense_Mutation p.R298W 0.25 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8DV-01 12 124416344 124416346 TTC GA DNAH10 Frame_Shift_Del p.F4242Efs*8 0.36 TCGA-VQ-A8DV-01 12 129559292 129559292 T G TMEM132D Silent p.R810R 0.38 TCGA-VQ-A8DV-01 12 132393746 132393746 C T ULK1 Silent p.I210I 0.24 TCGA-VQ-A8DV-01 13 109817294 109817294 C T MYO16 Missense_Mutation p.T1715M 0.28 tolerated_low_confidence(0.06) benign(0.052) TCGA-VQ-A8DV-01 13 53422076 53422076 C T PCDH8 Missense_Mutation p.A166T 0.20 tolerated(0.3) benign(0.007) TCGA-VQ-A8DV-01 13 95131277 95131277 C T DCT Missense_Mutation p.R78Q 0.16 tolerated(0.3) benign(0.063) TCGA-VQ-A8DV-01 14 104641875 104641875 C A KIF26A Missense_Mutation p.A917D 0.80 tolerated(0.18) benign(0.203) TCGA-VQ-A8DV-01 14 106110875 106110875 C T IGHG2 Missense_Mutation p.V85I 0.10 deleterious(0.04) probably_damaging(0.996) TCGA-VQ-A8DV-01 14 55611931 55611931 G A LGALS3 Missense_Mutation p.S232N 0.21 tolerated(1) benign(0.006) TCGA-VQ-A8DV-01 14 64916277 64916277 G A MTHFD1 Silent p.L798L 0.48 TCGA-VQ-A8DV-01 15 24923485 24923485 A T NPAP1 Missense_Mutation p.D824V 0.37 tolerated(0.11) benign(0) TCGA-VQ-A8DV-01 15 76019496 76019496 G A ODF3L1 Missense_Mutation p.R147H 0.37 deleterious(0.05) benign(0.006) TCGA-VQ-A8DV-01 16 15817997 15817997 G A NDE1 Intron 0.08 TCGA-VQ-A8DV-01 16 57787859 57787860 - GGA KATNB1 In_Frame_Ins p.R394dup 0.20 TCGA-VQ-A8DV-01 16 7645562 7645562 C T RBFOX1 Silent p.F180F 0.55 TCGA-VQ-A8DV-01 17 29161886 29161886 A C ATAD5 Missense_Mutation p.I263L 0.25 tolerated(0.07) benign(0.213) TCGA-VQ-A8DV-01 17 39633456 39633456 C T KRT35 Splice_Site p.X407_splice 0.17 TCGA-VQ-A8DV-01 17 40001938 40001938 C T KLHL10 Silent p.L415L 0.32 TCGA-VQ-A8DV-01 17 40256929 40256929 C A DHX58 Missense_Mutation p.R473L 0.21 deleterious(0) probably_damaging(0.993) TCGA-VQ-A8DV-01 17 7578542 7578543 - GGCA TP53 Frame_Shift_Ins p.L130Cfs*20 0.58 TCGA-VQ-A8DV-01 19 17883350 17883350 G A FCHO1 Missense_Mutation p.V227M 0.34 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8DV-01 19 24309871 24309871 A T ZNF254 Nonsense_Mutation p.K357* 0.26 TCGA-VQ-A8DV-01 19 38876379 38876379 G A GGN Missense_Mutation p.S508L 0.15 tolerated_low_confidence(0.31) unknown(0) TCGA-VQ-A8DV-01 19 42859910 42859910 G A MEGF8 Missense_Mutation p.G1315E 0.29 deleterious(0) probably_damaging(0.977) TCGA-VQ-A8DV-01 19 44831985 44831989 CACCT - ZNF112 Frame_Shift_Del p.E780Vfs*7 0.39 TCGA-VQ-A8DV-01 19 56953192 56953192 C A ZNF667 Missense_Mutation p.C391F 0.22 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8DV-01 19 57293441 57293441 C T ZIM2 Missense_Mutation p.V176M 0.33 deleterious(0.01) probably_damaging(0.993) TCGA-VQ-A8DV-01 1 117635369 117635369 A C TTF2 Missense_Mutation p.E941A 0.62 deleterious(0.01) benign(0.437) TCGA-VQ-A8DV-01 1 12476830 12476830 G A VPS13D Missense_Mutation p.G4095R 0.68 probably_damaging(0.999) TCGA-VQ-A8DV-01 1 151089909 151089909 A G GABPB2 Missense_Mutation p.I322V 0.31 tolerated(0.4) benign(0.005) TCGA-VQ-A8DV-01 1 152191936 152191936 G A HRNR Silent p.S723S 0.27 TCGA-VQ-A8DV-01 1 155785765 155785765 G A GON4L Intron 0.39 TCGA-VQ-A8DV-01 1 16255132 16255132 G T SPEN Silent p.P799P 0.64 TCGA-VQ-A8DV-01 1 183518368 183518368 A T SMG7 Missense_Mutation p.E927V 0.30 deleterious_low_confidence(0) possibly_damaging(0.634) TCGA-VQ-A8DV-01 1 21071398 21071398 T C HP1BP3 Silent p.K518K 0.71 TCGA-VQ-A8DV-01 1 222892658 222892658 C G BROX Missense_Mutation p.Q88E 0.20 tolerated(0.09) benign(0.105) TCGA-VQ-A8DV-01 1 248402449 248402449 C A OR2M4 Silent p.L73L 0.05 TCGA-VQ-A8DV-01 20 32439897 32439897 G A CHMP4B Silent p.A166A 0.05 TCGA-VQ-A8DV-01 20 3732588 3732588 G A HSPA12B Silent p.A612A 0.17 TCGA-VQ-A8DV-01 20 47881399 47881399 T C ZNFX1 Missense_Mutation p.I669V 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A8DV-01 20 50705026 50705026 C T ZFP64 Missense_Mutation p.R181Q 0.07 deleterious(0.02) probably_damaging(0.996) TCGA-VQ-A8DV-01 20 61512325 61512325 G - DIDO1 Frame_Shift_Del p.T1662Hfs*202 0.14 TCGA-VQ-A8DV-01 21 45741682 45741682 C T PFKL Missense_Mutation p.A421V 0.25 tolerated(0.13) probably_damaging(0.999) TCGA-VQ-A8DV-01 22 36722677 36722677 T C MYH9 Missense_Mutation p.N183S 0.73 probably_damaging(0.994) TCGA-VQ-A8DV-01 2 125232316 125232316 C G CNTNAP5 Missense_Mutation p.L307V 0.31 deleterious(0.04) probably_damaging(0.992) TCGA-VQ-A8DV-01 2 132240166 132240176 AGACCTGGCCA - TUBA3D Frame_Shift_Del p.D367Gfs*24 0.40 TCGA-VQ-A8DV-01 2 163250983 163250983 G A KCNH7 Nonsense_Mutation p.R876* 0.34 TCGA-VQ-A8DV-01 2 241405703 241405703 G A GPC1 Missense_Mutation p.R558Q 0.35 deleterious(0) probably_damaging(0.978) TCGA-VQ-A8DV-01 3 142499787 142499787 C T TRPC1 Silent p.D292D 0.17 TCGA-VQ-A8DV-01 3 179096574 179096574 T G MFN1 Missense_Mutation p.L545R 0.29 tolerated(0.1) benign(0.32) TCGA-VQ-A8DV-01 3 48646596 48646596 G T UQCRC1 Missense_Mutation p.T70K 0.37 deleterious(0) probably_damaging(1) TCGA-VQ-A8DV-01 4 1330744 1330744 C T MAEA Silent p.T287T 0.34 TCGA-VQ-A8DV-01 4 156763417 156763420 CTTC TTT ASIC5 Frame_Shift_Del p.E318Nfs*7 0.21 TCGA-VQ-A8DV-01 4 186260653 186260653 A C SNX25 Missense_Mutation p.T515P 0.13 tolerated(0.26) benign(0.393) TCGA-VQ-A8DV-01 4 26483328 26483328 C T CCKAR Missense_Mutation p.G407R 0.54 tolerated(0.55) benign(0) TCGA-VQ-A8DV-01 5 112173895 112173895 A C APC Missense_Mutation p.E868D 0.35 benign(0.008) TCGA-VQ-A8DV-01 5 140184727 140184727 T G PCDHA2 Intron 0.64 TCGA-VQ-A8DV-01 5 231001 231001 C T SDHA Missense_Mutation p.R261C 0.25 deleterious_low_confidence(0.02) possibly_damaging(0.891) TCGA-VQ-A8DV-01 5 37342666 37342666 C A NUP155 Missense_Mutation p.A360S 0.12 deleterious(0.01) probably_damaging(0.997) TCGA-VQ-A8DV-01 6 11778855 11778856 - AT ADTRP Frame_Shift_Ins p.M46Ifs*2 0.38 TCGA-VQ-A8DV-01 6 152653008 152653008 G A SYNE1 Missense_Mutation p.T4271I 0.25 probably_damaging(0.999) TCGA-VQ-A8DV-01 6 28329219 28329219 C A ZKSCAN3 Missense_Mutation p.S174Y 0.43 deleterious(0.01) possibly_damaging(0.873) TCGA-VQ-A8DV-01 6 41754858 41754858 C T PRICKLE4 Silent p.T382T 0.23 TCGA-VQ-A8DV-01 6 52762688 52762688 C T GSTA3 Missense_Mutation p.V161M 0.39 tolerated(0.07) possibly_damaging(0.628) TCGA-VQ-A8DV-01 6 71235702 71235702 T G FAM135A Missense_Mutation p.I972S 0.24 deleterious_low_confidence(0.02) benign(0.003) TCGA-VQ-A8DV-01 7 107329564 107329564 C T SLC26A4 Silent p.I356I 0.58 TCGA-VQ-A8DV-01 7 148769032 148769032 G A ZNF786 Nonsense_Mutation p.R278* 0.25 TCGA-VQ-A8DV-01 8 100589861 100589861 G T VPS13B Missense_Mutation p.E1765D 0.10 deleterious(0.04) possibly_damaging(0.899) TCGA-VQ-A8DV-01 8 105264082 105264082 C T RIMS2 3'Flank 0.24 TCGA-VQ-A8DV-01 8 1497378 1497378 C T DLGAP2 Silent p.N173N 0.23 TCGA-VQ-A8DV-01 8 16032694 16032694 A T MSR1 Splice_Site p.X73_splice 0.35 TCGA-VQ-A8DV-01 8 33449695 33449695 G A DUSP26 Nonsense_Mutation p.R158* 0.61 TCGA-VQ-A8DV-01 X 117043384 117043384 G C KLHL13 Missense_Mutation p.P419A 0.58 deleterious(0.02) probably_damaging(0.985) TCGA-VQ-A8DV-01 X 73071871 73071871 C T XIST RNA 0.67 TCGA-VQ-A8DZ-01 10 5790928 5790929 - TA FAM208B Frame_Shift_Ins p.T1850Ifs*3 0.12 TCGA-VQ-A8DZ-01 10 70043949 70043949 G C PBLD Silent p.G284G 0.35 TCGA-VQ-A8DZ-01 11 1015942 1015943 AC - MUC6 Frame_Shift_Del p.S2287Tfs*86 0.34 TCGA-VQ-A8DZ-01 11 111941165 111941165 A G PIH1D2 Missense_Mutation p.S270P 0.09 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8DZ-01 11 123677000 123677000 C T OR6M1 Missense_Mutation p.E20K 0.11 tolerated(0.61) benign(0.002) TCGA-VQ-A8DZ-01 11 125359345 125359345 G T FEZ1 Intron 0.07 TCGA-VQ-A8DZ-01 11 133790885 133790885 A C IGSF9B Missense_Mutation p.L912R 0.29 deleterious(0) probably_damaging(0.94) TCGA-VQ-A8DZ-01 11 20939790 20939790 T G NELL1 Missense_Mutation p.N222K 0.19 deleterious(0.02) possibly_damaging(0.621) TCGA-VQ-A8DZ-01 11 20939791 20939791 C T NELL1 Silent p.L223L 0.18 TCGA-VQ-A8DZ-01 11 65810717 65810717 G A GAL3ST3 Missense_Mutation p.A186V 0.09 deleterious(0.02) benign(0.309) TCGA-VQ-A8DZ-01 11 78413324 78413324 G T TENM4 Missense_Mutation p.P1445H 0.33 deleterious(0) probably_damaging(0.992) TCGA-VQ-A8DZ-01 11 83874551 83874551 T G DLG2 Missense_Mutation p.N193H 0.12 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8DZ-01 12 124427947 124427947 C A CCDC92 Missense_Mutation p.S43I 0.14 tolerated(0.11) possibly_damaging(0.812) TCGA-VQ-A8DZ-01 12 21690007 21690007 C A GYS2 Missense_Mutation p.D665Y 0.13 tolerated(0.14) possibly_damaging(0.822) TCGA-VQ-A8DZ-01 12 5155138 5155138 C T KCNA5 Missense_Mutation p.R609W 0.54 deleterious_low_confidence(0) possibly_damaging(0.792) TCGA-VQ-A8DZ-01 12 77421797 77421797 G A E2F7 Missense_Mutation p.A669V 0.14 tolerated(0.21) benign(0.007) TCGA-VQ-A8DZ-01 12 81762559 81762559 G A PPFIA2 Missense_Mutation p.S476F 0.22 deleterious(0) probably_damaging(0.978) TCGA-VQ-A8DZ-01 12 81777858 81777858 T G PPFIA2 Missense_Mutation p.K310Q 0.18 tolerated(0.05) probably_damaging(0.949) TCGA-VQ-A8DZ-01 12 98850224 98850224 A G SLC9A7P1 RNA 0.15 TCGA-VQ-A8DZ-01 13 109562479 109562479 A C MYO16 Missense_Mutation p.N614H 0.16 tolerated(0.14) benign(0.078) TCGA-VQ-A8DZ-01 13 33012861 33012861 A G N4BP2L2 Silent p.P721P 0.10 TCGA-VQ-A8DZ-01 13 41508066 41508066 A T ELF1 Missense_Mutation p.I452K 0.13 deleterious(0) possibly_damaging(0.866) TCGA-VQ-A8DZ-01 13 53420187 53420187 C A PCDH8 Silent p.A795A 0.16 TCGA-VQ-A8DZ-01 13 77835393 77835393 G C MYCBP2 Missense_Mutation p.H551D 0.02 probably_damaging(0.942) TCGA-VQ-A8DZ-01 14 33291778 33291778 A G AKAP6 Missense_Mutation p.S1587G 0.15 tolerated(0.11) benign(0.005) TCGA-VQ-A8DZ-01 14 74825534 74825534 G A VRTN Missense_Mutation p.R683H 0.14 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8DZ-01 14 74973402 74973402 C T LTBP2 Silent p.V1344V 0.13 TCGA-VQ-A8DZ-01 15 25442616 25442616 A T SNORD115-14 3'Flank 0.14 TCGA-VQ-A8DZ-01 16 2580546 2580546 A G CEMP1 Missense_Mutation p.S177P 0.22 tolerated_low_confidence(1) benign(0) TCGA-VQ-A8DZ-01 16 30663255 30663255 G A PRR14 Silent p.V54V 0.18 TCGA-VQ-A8DZ-01 16 67984868 67984868 C T SLC12A4 Missense_Mutation p.V467M 0.18 deleterious(0.02) possibly_damaging(0.903) TCGA-VQ-A8DZ-01 17 15619469 15619469 G A ZNF286A Missense_Mutation p.R144Q 0.10 tolerated(0.14) benign(0.001) TCGA-VQ-A8DZ-01 17 16527476 16527476 G T ZNF624 Missense_Mutation p.H242N 0.18 deleterious(0) benign(0.129) TCGA-VQ-A8DZ-01 17 26982392 26982392 C T SDF2 Silent p.K87K 0.14 TCGA-VQ-A8DZ-01 17 40557230 40557230 G A PTRF Silent p.S216S 0.37 TCGA-VQ-A8DZ-01 17 46655325 46655325 C T HOXB4 Silent p.P119P 0.54 TCGA-VQ-A8DZ-01 17 72356268 72356268 G A BTBD17 Missense_Mutation p.R68W 0.40 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8DZ-01 17 73038712 73038712 C T ATP5H Missense_Mutation p.D12N 0.03 tolerated(0.42) probably_damaging(0.971) TCGA-VQ-A8DZ-01 17 7578496 7578496 A G TP53 Missense_Mutation p.L145P 0.38 tolerated(0.05) probably_damaging(1) TCGA-VQ-A8DZ-01 18 22806839 22806839 G C ZNF521 Missense_Mutation p.T348R 0.08 tolerated(0.1) probably_damaging(0.958) TCGA-VQ-A8DZ-01 18 5890358 5890358 C A TMEM200C Missense_Mutation p.G569C 0.56 deleterious(0.01) benign(0.058) TCGA-VQ-A8DZ-01 18 5890440 5890440 C A TMEM200C Silent p.R541R 0.37 TCGA-VQ-A8DZ-01 18 61306963 61306963 T A SERPINB4 Missense_Mutation p.T173S 0.10 tolerated(0.16) benign(0.04) TCGA-VQ-A8DZ-01 18 64211444 64211444 G T CDH19 Missense_Mutation p.H326Q 0.20 tolerated(0.36) benign(0.003) TCGA-VQ-A8DZ-01 19 17886791 17886791 C T FCHO1 Splice_Site p.X335_splice 0.26 TCGA-VQ-A8DZ-01 19 22940402 22940402 A G ZNF99 Missense_Mutation p.F770S 0.47 deleterious(0) probably_damaging(0.968) TCGA-VQ-A8DZ-01 19 24102307 24102307 G C ZNF726 Intron 0.07 TCGA-VQ-A8DZ-01 1 107867055 107867055 A C NTNG1 Missense_Mutation p.N133T 0.38 deleterious(0) probably_damaging(1) TCGA-VQ-A8DZ-01 1 158606546 158606546 T G SPTA1 Missense_Mutation p.K1732T 0.42 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8DZ-01 1 167487756 167487756 C A CD247 5'UTR 0.09 TCGA-VQ-A8DZ-01 1 17765009 17765009 A G RCC2 Translation_Start_Site p.M1? 0.24 deleterious_low_confidence(0) unknown(0) TCGA-VQ-A8DZ-01 1 211847652 211847652 C T NEK2 Silent p.K100K 0.34 TCGA-VQ-A8DZ-01 1 248458852 248458852 A C OR2T12 Missense_Mutation p.F10C 0.07 deleterious(0) probably_damaging(1) TCGA-VQ-A8DZ-01 1 72400802 72400802 T A NEGR1 Missense_Mutation p.Q123H 0.12 tolerated(0.08) benign(0.271) TCGA-VQ-A8DZ-01 1 75038102 75038102 G C C1orf173 Missense_Mutation p.L1098V 0.12 tolerated(0.5) benign(0.036) TCGA-VQ-A8DZ-01 1 87805291 87805291 G T LMO4 Silent p.A103A 0.29 TCGA-VQ-A8DZ-01 1 9910781 9910781 G C CTNNBIP1 Missense_Mutation p.Q81E 0.37 deleterious_low_confidence(0.02) possibly_damaging(0.848) TCGA-VQ-A8DZ-01 20 1918174 1918174 C A SIRPA Missense_Mutation p.S492Y 0.33 deleterious(0) probably_damaging(0.962) TCGA-VQ-A8DZ-01 20 33999787 33999787 G T UQCC1 5'UTR 0.29 TCGA-VQ-A8DZ-01 20 44686215 44686215 G A SLC12A5 Missense_Mutation p.G1131S 0.22 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8DZ-01 21 10862655 10862655 G A IGHV1OR21-1 Missense_Mutation p.V12I 0.10 deleterious(0.04) benign(0.047) TCGA-VQ-A8DZ-01 21 37418145 37418145 G T SETD4 Missense_Mutation p.S154Y 0.07 deleterious(0.03) possibly_damaging(0.516) TCGA-VQ-A8DZ-01 22 41654064 41654064 T C RANGAP1 Missense_Mutation p.N221S 0.70 deleterious(0.04) benign(0.434) TCGA-VQ-A8DZ-01 22 50656472 50656472 C T TUBGCP6 Missense_Mutation p.R1748H 0.08 tolerated(0.05) probably_damaging(0.999) TCGA-VQ-A8DZ-01 2 132237804 132237804 G T TUBA3D Missense_Mutation p.A180S 0.05 tolerated_low_confidence(0.18) possibly_damaging(0.742) TCGA-VQ-A8DZ-01 2 177036300 177036300 G C HOXD3 Silent p.T199T 0.13 TCGA-VQ-A8DZ-01 2 179598023 179598023 A G TTN Missense_Mutation p.F5333L 0.10 TCGA-VQ-A8DZ-01 2 1926342 1926342 G A MYT1L Missense_Mutation p.A400V 0.24 tolerated(0.24) benign(0.031) TCGA-VQ-A8DZ-01 2 202319556 202319556 G C STRADB 5'UTR 0.12 TCGA-VQ-A8DZ-01 2 227898159 227898159 A G COL4A4 Silent p.L1182L 0.29 TCGA-VQ-A8DZ-01 2 233785264 233785264 C T NGEF Silent p.S186S 0.26 TCGA-VQ-A8DZ-01 2 26693518 26693518 G A OTOF Silent p.D1322D 0.11 TCGA-VQ-A8DZ-01 2 91843478 91843478 G A AC027612.6 RNA 0.23 TCGA-VQ-A8DZ-01 3 126723998 126723998 C T PLXNA1 Silent p.F603F 0.21 TCGA-VQ-A8DZ-01 3 127831751 127831751 T C RUVBL1 Missense_Mutation p.E114G 0.10 deleterious(0) probably_damaging(0.96) TCGA-VQ-A8DZ-01 3 45780127 45780128 - TAT SACM1L In_Frame_Ins p.Y482dup 0.10 TCGA-VQ-A8DZ-01 3 4693862 4693862 G A ITPR1 Missense_Mutation p.R304H 0.33 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8DZ-01 3 54798307 54798307 G A CACNA2D3 Missense_Mutation p.V437M 0.23 deleterious(0) probably_damaging(0.974) TCGA-VQ-A8DZ-01 4 10447810 10447810 G T ZNF518B Nonsense_Mutation p.S48* 0.08 TCGA-VQ-A8DZ-01 4 134072955 134072955 C A PCDH10 Missense_Mutation p.L554M 0.14 deleterious(0) probably_damaging(0.966) TCGA-VQ-A8DZ-01 4 155508744 155508744 T A FGA Nonsense_Mutation p.K144* 0.13 TCGA-VQ-A8DZ-01 4 169157521 169157521 G A DDX60 Missense_Mutation p.S1472L 0.11 deleterious(0) benign(0.342) TCGA-VQ-A8DZ-01 4 36075352 36075352 G T ARAP2 Missense_Mutation p.Q1568K 0.16 tolerated(0.09) benign(0.297) TCGA-VQ-A8DZ-01 4 36075355 36075355 T C ARAP2 Missense_Mutation p.I1567V 0.16 tolerated(0.06) probably_damaging(0.911) TCGA-VQ-A8DZ-01 4 66361213 66361213 C T EPHA5 Missense_Mutation p.G320D 0.18 tolerated(0.31) benign(0) TCGA-VQ-A8DZ-01 4 80328910 80328910 A C GK2 Missense_Mutation p.F149V 0.09 deleterious(0) probably_damaging(1) TCGA-VQ-A8DZ-01 5 140021315 140021315 C T TMCO6 Silent p.V88V 0.11 TCGA-VQ-A8DZ-01 5 140554318 140554318 C T PCDHB7 Silent p.D634D 0.10 TCGA-VQ-A8DZ-01 5 40955636 40955636 C A C7 Missense_Mutation p.P414H 0.08 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8DZ-01 5 49695089 49695089 C A EMB 3'UTR 0.08 TCGA-VQ-A8DZ-01 5 85578644 85578644 A T NBPF22P RNA 0.08 TCGA-VQ-A8DZ-01 6 151243346 151243346 G A MTHFD1L Missense_Mutation p.M330I 0.30 tolerated(0.2) benign(0.002) TCGA-VQ-A8DZ-01 6 26124133 26124133 C T HIST1H2BC 5'UTR 0.08 TCGA-VQ-A8DZ-01 6 31914867 31914867 T G CFB Missense_Mutation p.S630A 0.23 deleterious(0.03) benign(0.311) TCGA-VQ-A8DZ-01 6 90576862 90576862 C A CASP8AP2 RNA 0.10 TCGA-VQ-A8DZ-01 7 148903910 148903910 C A ZNF282 Silent p.S236S 0.07 TCGA-VQ-A8DZ-01 7 48412078 48412078 T G ABCA13 Missense_Mutation p.V3706G 0.11 benign(0.038) TCGA-VQ-A8DZ-01 7 82583894 82583894 G T PCLO Silent p.L2125L 0.70 TCGA-VQ-A8DZ-01 8 110477167 110477167 G A PKHD1L1 Silent p.A2702A 0.22 TCGA-VQ-A8DZ-01 8 17612595 17612595 A G MTUS1 Missense_Mutation p.M241T 0.09 tolerated(1) benign(0) TCGA-VQ-A8DZ-01 8 74235149 74235149 A G RDH10 Missense_Mutation p.I302V 0.45 tolerated(0.19) benign(0.009) TCGA-VQ-A8DZ-01 9 111625066 111625066 G A ACTL7A Missense_Mutation p.R155Q 0.77 tolerated(0.31) benign(0.003) TCGA-VQ-A8DZ-01 9 128069704 128069704 G A GAPVD1 Missense_Mutation p.A377T 0.12 tolerated(0.21) probably_damaging(0.998) TCGA-VQ-A8DZ-01 9 19573404 19573404 G A SLC24A2 Missense_Mutation p.S431L 0.21 tolerated(0.19) benign(0.05) TCGA-VQ-A8DZ-01 9 32630400 32630400 C A TAF1L Missense_Mutation p.E1726D 0.53 tolerated_low_confidence(0.24) benign(0.001) TCGA-VQ-A8DZ-01 9 99580236 99580236 C T ZNF782 Missense_Mutation p.R690K 0.11 tolerated(0.59) probably_damaging(0.997) TCGA-VQ-A8DZ-01 X 101098169 101098169 A C NXF5 5'UTR 0.12 TCGA-VQ-A8DZ-01 X 128901663 128901663 G A XPNPEP2 Missense_Mutation p.E609K 0.16 tolerated(0.71) benign(0.002) TCGA-VQ-A8DZ-01 X 146312583 146312583 C G MIR507 RNA 0.11 TCGA-VQ-A8DZ-01 X 49020913 49020913 T C MAGIX Intron 0.23 TCGA-VQ-A8E0-01 10 116331149 116331149 C T ABLIM1 Missense_Mutation p.G194R 0.18 deleterious(0) probably_damaging(1) TCGA-VQ-A8E0-01 10 118236647 118236647 G A PNLIPRP3 Silent p.Q462Q 0.09 TCGA-VQ-A8E0-01 10 129902167 129902167 A G MKI67 Missense_Mutation p.L2646S 0.15 tolerated(0.32) benign(0.073) TCGA-VQ-A8E0-01 10 7618568 7618568 G C ITIH5 Missense_Mutation p.A609G 0.44 deleterious(0.01) possibly_damaging(0.779) TCGA-VQ-A8E0-01 10 99410810 99410810 G C PI4K2A Missense_Mutation p.C153S 0.43 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8E0-01 11 108384767 108384767 G A EXPH5 Silent p.F489F 0.17 TCGA-VQ-A8E0-01 11 125888342 125888342 T A CDON Missense_Mutation p.N175Y 0.28 deleterious(0) probably_damaging(0.994) TCGA-VQ-A8E0-01 11 130278714 130278714 C A ADAMTS8 Missense_Mutation p.K624N 0.14 deleterious(0) probably_damaging(0.989) TCGA-VQ-A8E0-01 11 27393838 27393838 T G LGR4 Missense_Mutation p.Q496P 0.33 tolerated(0.13) benign(0) TCGA-VQ-A8E0-01 11 47444400 47444400 G T PSMC3 Missense_Mutation p.A239D 0.18 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8E0-01 11 5221189 5221189 G A OR51V1 Nonsense_Mutation p.Q248* 0.27 TCGA-VQ-A8E0-01 11 55999758 55999758 T G OR5T2 Missense_Mutation p.S302R 0.33 deleterious(0.01) possibly_damaging(0.548) TCGA-VQ-A8E0-01 11 62295024 62295024 C A AHNAK Nonsense_Mutation p.E2289* 0.17 TCGA-VQ-A8E0-01 11 67396466 67396467 - AA NUDT8 Frame_Shift_Ins p.R84Lfs*39 0.22 TCGA-VQ-A8E0-01 11 89424070 89424070 C A FOLH1B RNA 0.09 TCGA-VQ-A8E0-01 12 13128298 13128298 C A HEBP1 Missense_Mutation p.D172Y 0.31 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8E0-01 12 13215836 13215836 C T KIAA1467 Missense_Mutation p.P260L 0.29 deleterious(0.03) probably_damaging(0.987) TCGA-VQ-A8E0-01 12 32137025 32137025 G T KIAA1551 Missense_Mutation p.A1046S 0.25 tolerated(0.26) benign(0.124) TCGA-VQ-A8E0-01 12 40758673 40758673 C A LRRK2 Nonsense_Mutation p.S2404* 0.25 TCGA-VQ-A8E0-01 12 57498577 57498577 T G STAT6 Missense_Mutation p.I341L 0.06 tolerated(1) benign(0.001) TCGA-VQ-A8E0-01 12 5936968 5936968 G A ANO2 Missense_Mutation p.R283C 0.23 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8E0-01 12 9254240 9254240 C T A2M Missense_Mutation p.G433S 0.43 tolerated(0.42) benign(0.002) TCGA-VQ-A8E0-01 12 9322118 9322118 G T PZP Missense_Mutation p.Q637K 0.30 tolerated(0.65) benign(0.011) TCGA-VQ-A8E0-01 12 9346799 9346799 G A PZP Silent p.P376P 0.13 TCGA-VQ-A8E0-01 13 108922375 108922375 C G TNFSF13B Missense_Mutation p.D44E 0.15 tolerated(0.29) benign(0.005) TCGA-VQ-A8E0-01 13 113851377 113851377 A C PCID2 Missense_Mutation p.N127K 0.19 tolerated(0.63) benign(0.003) TCGA-VQ-A8E0-01 13 24520065 24520065 G A ANKRD20A19P RNA 0.19 TCGA-VQ-A8E0-01 13 32785123 32785123 C T FRY Missense_Mutation p.P1515S 0.20 deleterious(0) probably_damaging(1) TCGA-VQ-A8E0-01 13 37401824 37401824 G A RFXAP Silent p.Q251Q 0.18 TCGA-VQ-A8E0-01 13 43155387 43155387 A G TNFSF11 Silent p.S115S 0.25 TCGA-VQ-A8E0-01 13 43987109 43987109 C A ENOX1 5'UTR 0.22 TCGA-VQ-A8E0-01 13 53624812 53624812 G A OLFM4 Missense_Mutation p.S480N 0.32 deleterious(0.01) probably_damaging(0.996) TCGA-VQ-A8E0-01 13 73649958 73649958 G A KLF5 Silent p.G436G 0.15 TCGA-VQ-A8E0-01 14 100801048 100801048 C A WARS 3'UTR 0.19 TCGA-VQ-A8E0-01 14 105352951 105352951 C T CEP170B Missense_Mutation p.P792L 0.41 tolerated(0.08) benign(0.012) TCGA-VQ-A8E0-01 14 29237293 29237293 A C FOXG1 Missense_Mutation p.T270P 0.27 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8E0-01 14 52734841 52734841 G A PTGDR Silent p.S103S 0.33 TCGA-VQ-A8E0-01 14 75134293 75134293 A G AREL1 Missense_Mutation p.V640A 0.29 tolerated(0.1) benign(0.171) TCGA-VQ-A8E0-01 15 100332871 100332871 T C AC090825.1 3'Flank 0.05 TCGA-VQ-A8E0-01 15 63952045 63952045 T A HERC1 Missense_Mutation p.D3105V 0.19 benign(0.432) TCGA-VQ-A8E0-01 15 84245492 84245492 A T SH3GL3 Missense_Mutation p.D208V 0.17 deleterious(0) probably_damaging(1) TCGA-VQ-A8E0-01 15 99671320 99671320 G A SYNM Missense_Mutation p.E918K 0.40 deleterious(0.04) possibly_damaging(0.602) TCGA-VQ-A8E0-01 17 18039096 18039096 C T MYO15A Silent p.I1518I 0.08 TCGA-VQ-A8E0-01 17 27778688 27778688 C T TAOK1 Missense_Mutation p.A41V 0.04 deleterious(0) probably_damaging(0.973) TCGA-VQ-A8E0-01 17 37119207 37119207 G A FBXO47 Silent p.T24T 0.38 TCGA-VQ-A8E0-01 17 40556952 40556952 G A PTRF Missense_Mutation p.A309V 0.17 deleterious(0.01) probably_damaging(0.972) TCGA-VQ-A8E0-01 17 41598233 41598233 T G DHX8 Missense_Mutation p.F1018V 0.36 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8E0-01 17 45885541 45885541 G A OSBPL7 3'UTR 0.25 TCGA-VQ-A8E0-01 17 48274572 48274572 C T COL1A1 Missense_Mutation p.R240H 0.27 unknown(0) TCGA-VQ-A8E0-01 17 74387178 74387178 C T UBE2O Missense_Mutation p.R1242Q 0.35 deleterious_low_confidence(0) probably_damaging(0.975) TCGA-VQ-A8E0-01 17 7572928 7572935 CAGTCTGA - TP53 Frame_Shift_Del p.S392T 0.34 TCGA-VQ-A8E0-01 17 79673996 79673996 G A SLC25A10 Missense_Mutation p.E136K 0.20 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-VQ-A8E0-01 17 8136303 8136303 T G CTC1 Missense_Mutation p.Q622H 0.43 deleterious(0) possibly_damaging(0.6) TCGA-VQ-A8E0-01 19 10071524 10071524 G T COL5A3 Missense_Mutation p.Q1632K 0.35 unknown(0) TCGA-VQ-A8E0-01 19 1483655 1483655 C T PCSK4 Missense_Mutation p.R462H 0.48 tolerated(0.09) benign(0) TCGA-VQ-A8E0-01 19 14910471 14910471 T A OR7C1 Missense_Mutation p.T160S 0.39 tolerated_low_confidence(1) benign(0.074) TCGA-VQ-A8E0-01 19 37211342 37211342 G T ZNF567 Missense_Mutation p.R541S 0.23 tolerated(0.06) probably_damaging(0.994) TCGA-VQ-A8E0-01 19 46996862 46996862 C A PNMAL2 Missense_Mutation p.G621W 0.58 deleterious_low_confidence(0) unknown(0) TCGA-VQ-A8E0-01 19 8387754 8387754 C T KANK3 Missense_Mutation p.G812D 0.40 tolerated_low_confidence(0.31) benign(0) TCGA-VQ-A8E0-01 19 9869125 9869125 G A ZNF846 Nonsense_Mutation p.Q210* 0.17 TCGA-VQ-A8E0-01 1 118693198 118693199 - T SPAG17 Frame_Shift_Ins p.P95Tfs*5 0.35 TCGA-VQ-A8E0-01 1 1268357 1268357 C T TAS1R3 Silent p.F444F 0.37 TCGA-VQ-A8E0-01 1 1455631 1455631 G C ATAD3A Missense_Mutation p.E257Q 0.34 deleterious(0.03) possibly_damaging(0.673) TCGA-VQ-A8E0-01 1 158632642 158632642 C A SPTA1 Missense_Mutation p.V772L 0.27 tolerated(0.18) benign(0.012) TCGA-VQ-A8E0-01 1 158687761 158687761 C T OR6K3 Missense_Mutation p.V49I 0.14 tolerated(0.31) benign(0.078) TCGA-VQ-A8E0-01 1 177133539 177133539 A C ASTN1 Missense_Mutation p.F92V 0.15 deleterious_low_confidence(0) possibly_damaging(0.805) TCGA-VQ-A8E0-01 1 233514697 233514697 C T MLK4 Missense_Mutation p.L649F 0.18 tolerated(0.56) benign(0.052) TCGA-VQ-A8E0-01 1 235392600 235392600 T C ARID4B Silent p.E281E 0.38 TCGA-VQ-A8E0-01 1 236704976 236704976 C G LGALS8 Missense_Mutation p.S163C 0.38 deleterious(0.02) benign(0.047) TCGA-VQ-A8E0-01 1 247921698 247921698 C T OR1C1 Missense_Mutation p.R4K 0.38 tolerated(0.77) benign(0.025) TCGA-VQ-A8E0-01 1 6314072 6314072 G A GPR153 Silent p.I164I 0.27 TCGA-VQ-A8E0-01 20 51872833 51872833 G C TSHZ2 Missense_Mutation p.E946Q 0.63 deleterious(0.02) probably_damaging(0.999) TCGA-VQ-A8E0-01 21 28216912 28216912 G T ADAMTS1 Missense_Mutation p.A121E 0.33 tolerated(0.19) possibly_damaging(0.578) TCGA-VQ-A8E0-01 2 179497308 179497308 T C TTN Silent p.A14475A 0.61 TCGA-VQ-A8E0-01 2 242169025 242169025 G A HDLBP Silent p.P1266P 0.23 TCGA-VQ-A8E0-01 3 150645919 150645920 - T CLRN1 Frame_Shift_Ins p.I181Nfs*5 0.13 TCGA-VQ-A8E0-01 3 18436093 18436093 G T SATB1 Missense_Mutation p.S356Y 0.54 deleterious(0.02) possibly_damaging(0.742) TCGA-VQ-A8E0-01 3 188592354 188592354 G A LPP 3'UTR 0.12 TCGA-VQ-A8E0-01 3 37337602 37337602 C T GOLGA4 Nonsense_Mutation p.R258* 0.36 TCGA-VQ-A8E0-01 3 48613684 48613684 G A COL7A1 Missense_Mutation p.P1940S 0.06 unknown(0) TCGA-VQ-A8E0-01 3 63645436 63645436 G T SNTN Missense_Mutation p.A61S 0.26 deleterious(0.05) benign(0.36) TCGA-VQ-A8E0-01 4 166996138 166996138 A G TLL1 Missense_Mutation p.K766R 0.44 tolerated(0.62) benign(0.005) TCGA-VQ-A8E0-01 4 39459846 39459846 C T RPL9 Missense_Mutation p.E44K 0.26 deleterious(0.02) benign(0.356) TCGA-VQ-A8E0-01 4 5803707 5803707 G A EVC Missense_Mutation p.V779I 0.52 deleterious(0) benign(0.274) TCGA-VQ-A8E0-01 4 86985472 86985472 C T MAPK10 Missense_Mutation p.A353T 0.41 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8E0-01 4 88029464 88029464 G A AFF1 Silent p.P510P 0.50 TCGA-VQ-A8E0-01 5 1073833 1073833 T C SLC12A7 Missense_Mutation p.K719R 0.34 deleterious(0.02) probably_damaging(0.999) TCGA-VQ-A8E0-01 5 110097513 110097513 A T SLC25A46 3'UTR 0.22 TCGA-VQ-A8E0-01 5 111506032 111506032 C A EPB41L4A Nonsense_Mutation p.E569* 0.23 TCGA-VQ-A8E0-01 5 128368807 128368807 G T SLC27A6 Missense_Mutation p.M564I 0.43 tolerated(0.54) benign(0.134) TCGA-VQ-A8E0-01 5 134366975 134366975 C T PITX1 Silent p.P131P 0.46 TCGA-VQ-A8E0-01 5 140769371 140769371 T C PCDHGB4 Silent p.L640L 0.06 TCGA-VQ-A8E0-01 5 149323780 149323780 C T PDE6A Missense_Mutation p.V153I 0.17 tolerated(0.98) benign(0.043) TCGA-VQ-A8E0-01 5 154394259 154394259 C A KIF4B Missense_Mutation p.D280E 0.38 tolerated(0.85) benign(0.005) TCGA-VQ-A8E0-01 5 167995839 167995839 C G PANK3 Missense_Mutation p.D65H 0.24 deleterious(0) probably_damaging(1) TCGA-VQ-A8E0-01 6 121655573 121655573 C T TBC1D32 Missense_Mutation p.A2T 0.21 tolerated_low_confidence(0.06) benign(0.166) TCGA-VQ-A8E0-01 6 126136443 126136443 G C NCOA7 5'UTR 0.28 TCGA-VQ-A8E0-01 6 143825189 143825189 G T FUCA2 Missense_Mutation p.P205T 0.22 tolerated(0.05) benign(0.043) TCGA-VQ-A8E0-01 6 160329027 160329027 G C MAS1 3'UTR 0.14 TCGA-VQ-A8E0-01 6 160932038 160932038 A G LPAL2 RNA 0.18 TCGA-VQ-A8E0-01 6 17616185 17616185 G T NUP153 3'UTR 0.23 TCGA-VQ-A8E0-01 6 41766453 41766453 C T USP49 Missense_Mutation p.A629T 0.29 tolerated_low_confidence(0.15) benign(0.082) TCGA-VQ-A8E0-01 6 42713809 42713809 C T TBCC Translation_Start_Site p.M1? 0.27 deleterious_low_confidence(0) benign(0.001) TCGA-VQ-A8E0-01 6 46659562 46659562 A T TDRD6 Missense_Mutation p.T1233S 0.26 tolerated(0.74) benign(0.009) TCGA-VQ-A8E0-01 6 47251997 47251997 C A TNFRSF21 Missense_Mutation p.R307I 0.31 tolerated(0.14) benign(0.115) TCGA-VQ-A8E0-01 6 74125884 74125884 C T DDX43 Nonsense_Mutation p.Q628* 0.26 TCGA-VQ-A8E0-01 7 138406716 138406716 A G ATP6V0A4 Missense_Mutation p.S689P 0.44 tolerated(0.26) benign(0.006) TCGA-VQ-A8E0-01 7 1586811 1586811 G A TMEM184A Missense_Mutation p.P340L 0.37 tolerated(0.57) benign(0.002) TCGA-VQ-A8E0-01 7 28996456 28996456 A G AC005013.5 5'Flank 0.39 TCGA-VQ-A8E0-01 7 48314961 48314961 C A ABCA13 Missense_Mutation p.L1900I 0.44 benign(0.327) TCGA-VQ-A8E0-01 7 55910716 55910716 G A SEPT14 Silent p.H159H 0.31 TCGA-VQ-A8E0-01 7 64167527 64167527 A C ZNF107 Missense_Mutation p.N282T 0.08 tolerated(0.4) possibly_damaging(0.782) TCGA-VQ-A8E0-01 7 94059724 94059724 A G COL1A2 3'UTR 0.34 TCGA-VQ-A8E0-01 7 94989389 94989389 C T PON3 Missense_Mutation p.A321T 0.62 deleterious(0.03) benign(0.093) TCGA-VQ-A8E0-01 8 144681002 144681002 A G TIGD5 Missense_Mutation p.K310R 0.38 deleterious(0.04) probably_damaging(0.97) TCGA-VQ-A8E0-01 8 43013804 43013804 C T HGSNAT Silent p.H107H 0.47 TCGA-VQ-A8E0-01 8 72987564 72987564 G A TRPA1 Silent p.D27D 0.29 TCGA-VQ-A8E0-01 8 89086946 89086946 T A MMP16 Missense_Mutation p.N370I 0.46 deleterious(0) possibly_damaging(0.876) TCGA-VQ-A8E0-01 8 95182747 95182747 T G CDH17 Missense_Mutation p.E315A 0.26 tolerated(0.08) possibly_damaging(0.515) TCGA-VQ-A8E0-01 8 95182748 95182748 C A CDH17 Nonsense_Mutation p.E315* 0.26 TCGA-VQ-A8E0-01 9 100373881 100373881 T C TSTD2 Missense_Mutation p.D235G 0.08 tolerated(0.16) benign(0.022) TCGA-VQ-A8E0-01 9 2643350 2643350 C T VLDLR Silent p.D213D 0.43 TCGA-VQ-A8E0-01 9 35662977 35662977 C T ARHGEF39 Silent p.L213L 0.20 TCGA-VQ-A8E0-01 X 100668455 100668455 C T HNRNPH2 3'UTR 0.35 TCGA-VQ-A8E0-01 X 1428508 1428508 G A CSF2RA 3'UTR 0.45 TCGA-VQ-A8E0-01 X 154157905 154157905 G A F8 Missense_Mutation p.S1387F 0.41 deleterious(0) probably_damaging(0.99) TCGA-VQ-A8E0-01 Y 4966502 4966502 C A PCDH11Y Missense_Mutation p.P295T 0.46 deleterious(0) possibly_damaging(0.741) TCGA-VQ-A8E2-01 10 127424321 127424321 A G EDRF1 Missense_Mutation p.S536G 0.08 deleterious(0.02) possibly_damaging(0.641) TCGA-VQ-A8E2-01 10 33000657 33000657 C T C10ORF68 Silent p.S163S 0.19 TCGA-VQ-A8E2-01 11 115102201 115102201 C T CADM1 Missense_Mutation p.R145H 0.42 tolerated(0.07) benign(0.017) TCGA-VQ-A8E2-01 11 128774478 128774478 C T C11orf45 5'UTR 0.30 TCGA-VQ-A8E2-01 11 134063917 134063917 G T NCAPD3 Silent p.L606L 0.11 TCGA-VQ-A8E2-01 11 14793484 14793484 T C PDE3B Missense_Mutation p.M327T 0.09 deleterious(0) benign(0.011) TCGA-VQ-A8E2-01 11 55563539 55563539 T G OR5D14 Missense_Mutation p.F170V 0.31 deleterious(0) possibly_damaging(0.786) TCGA-VQ-A8E2-01 11 55927393 55927393 A C OR8K5 Missense_Mutation p.V134G 0.14 deleterious_low_confidence(0) benign(0.319) TCGA-VQ-A8E2-01 11 57428712 57428712 T C CLP1 Missense_Mutation p.M361T 0.23 deleterious(0) benign(0.266) TCGA-VQ-A8E2-01 11 62291191 62291191 G A AHNAK Silent p.P3566P 0.28 TCGA-VQ-A8E2-01 11 63586445 63586445 G A C11orf84 Missense_Mutation p.G302D 0.26 tolerated_low_confidence(0.31) benign(0.015) TCGA-VQ-A8E2-01 11 64757255 64757255 G A BATF2 Silent p.L57L 0.17 TCGA-VQ-A8E2-01 11 65733407 65733407 T G SART1 Missense_Mutation p.I263S 0.04 deleterious(0.01) benign(0.243) TCGA-VQ-A8E2-01 11 674690 674690 G A DEAF1 Missense_Mutation p.P450L 0.15 tolerated(0.07) benign(0.033) TCGA-VQ-A8E2-01 11 75298480 75298480 T G MAP6 Missense_Mutation p.E689A 0.24 tolerated_low_confidence(0.16) possibly_damaging(0.76) TCGA-VQ-A8E2-01 11 8719158 8719158 G C ST5 Missense_Mutation p.P989R 0.06 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8E2-01 11 9462002 9462002 A C IPO7 Missense_Mutation p.E899A 0.11 tolerated(0.19) benign(0.012) TCGA-VQ-A8E2-01 12 102151074 102151074 C T GNPTAB Missense_Mutation p.G1117E 0.26 tolerated(0.06) probably_damaging(0.992) TCGA-VQ-A8E2-01 12 120984304 120984304 G C RNF10 Missense_Mutation p.S85T 0.17 tolerated(0.45) benign(0) TCGA-VQ-A8E2-01 12 41337411 41337411 G A CNTN1 Nonsense_Mutation p.W464* 0.05 TCGA-VQ-A8E2-01 12 49724683 49724683 T - TROAP Frame_Shift_Del p.I686Sfs*7 0.29 TCGA-VQ-A8E2-01 13 25026545 25026545 C T PARP4 Missense_Mutation p.G1005S 0.35 tolerated(0.33) possibly_damaging(0.82) TCGA-VQ-A8E2-01 13 58207807 58207807 T A PCDH17 Missense_Mutation p.V376D 0.42 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8E2-01 13 77651463 77651463 A G MYCBP2 Silent p.N3810N 0.16 TCGA-VQ-A8E2-01 14 23894183 23894183 T A MYH7 Missense_Mutation p.K825M 0.14 deleterious(0) probably_damaging(1) TCGA-VQ-A8E2-01 14 33014440 33014440 G A AKAP6 Missense_Mutation p.R194Q 0.33 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8E2-01 14 45432407 45432407 C G FAM179B Silent p.A261A 0.25 TCGA-VQ-A8E2-01 14 70490004 70490004 C T SMOC1 Silent p.N377N 0.44 TCGA-VQ-A8E2-01 15 51221244 51221244 A G AP4E1 Missense_Mutation p.K194R 0.10 tolerated(0.48) probably_damaging(0.928) TCGA-VQ-A8E2-01 15 57730382 57730382 G A CGNL1 Missense_Mutation p.R62Q 0.20 tolerated(0.15) benign(0.035) TCGA-VQ-A8E2-01 15 67546870 67546870 G A AAGAB Intron 0.27 TCGA-VQ-A8E2-01 15 78390807 78390807 G A SH2D7 Missense_Mutation p.A172T 0.07 tolerated(0.57) benign(0) TCGA-VQ-A8E2-01 15 81582811 81582811 C G IL16 Silent p.L450L 0.18 TCGA-VQ-A8E2-01 16 1825654 1825654 G A EME2 Missense_Mutation p.V250I 0.06 tolerated(0.27) benign(0) TCGA-VQ-A8E2-01 16 21073962 21073962 G A DNAH3 Silent p.S1187S 0.40 TCGA-VQ-A8E2-01 16 22320292 22320292 G A POLR3E Missense_Mutation p.R71H 0.07 tolerated(0.11) possibly_damaging(0.608) TCGA-VQ-A8E2-01 16 68324429 68324430 - A SLC7A6 Frame_Shift_Ins p.N262Kfs*39 0.22 TCGA-VQ-A8E2-01 16 70502789 70502789 A G FUK Missense_Mutation p.E234G 0.11 deleterious(0) probably_damaging(1) TCGA-VQ-A8E2-01 16 71674709 71674709 G A MARVELD3 Missense_Mutation p.E338K 0.20 deleterious(0) probably_damaging(0.962) TCGA-VQ-A8E2-01 16 90162136 90162136 C T TUBB8P7 RNA 0.07 TCGA-VQ-A8E2-01 17 12647645 12647645 G C MYOCD Missense_Mutation p.R288P 0.14 deleterious(0) probably_damaging(1) TCGA-VQ-A8E2-01 17 46629818 46629818 A G HOXB3 Missense_Mutation p.Y7H 0.35 deleterious(0) probably_damaging(0.99) TCGA-VQ-A8E2-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.33 tolerated(0.13) possibly_damaging(0.631) TCGA-VQ-A8E2-01 17 76400045 76400045 G A PGS1 Missense_Mutation p.G426D 0.18 deleterious(0) probably_damaging(0.986) TCGA-VQ-A8E2-01 17 9632386 9632386 G A USP43 3'UTR 0.25 TCGA-VQ-A8E2-01 18 34853090 34853090 C T CELF4 Missense_Mutation p.A280T 0.12 tolerated(0.19) possibly_damaging(0.667) TCGA-VQ-A8E2-01 19 15640651 15640651 T C CYP4F22 Silent p.L118L 0.05 TCGA-VQ-A8E2-01 19 22270805 22270805 C A ZNF257 Missense_Mutation p.L85I 0.22 deleterious(0.04) benign(0.063) TCGA-VQ-A8E2-01 19 39328080 39328080 T C AC104534.3 Missense_Mutation p.K169R 0.11 tolerated(0.52) benign(0.001) TCGA-VQ-A8E2-01 19 3961031 3961031 C T DAPK3 Missense_Mutation p.R253H 0.15 deleterious(0) probably_damaging(0.926) TCGA-VQ-A8E2-01 19 43411955 43411955 T C PSG6 Missense_Mutation p.K253R 0.13 deleterious(0.03) benign(0.102) TCGA-VQ-A8E2-01 19 44792464 44792464 T C ZNF235 Missense_Mutation p.Y375C 0.24 deleterious(0) probably_damaging(0.994) TCGA-VQ-A8E2-01 19 45316790 45316790 G A BCAM Missense_Mutation p.A233T 0.31 deleterious(0.01) possibly_damaging(0.71) TCGA-VQ-A8E2-01 19 45997874 45997874 C T RTN2 Missense_Mutation p.G157R 0.19 deleterious_low_confidence(0.05) benign(0.36) TCGA-VQ-A8E2-01 19 55670605 55670605 T C DNAAF3 Missense_Mutation p.E551G 0.18 deleterious_low_confidence(0) possibly_damaging(0.571) TCGA-VQ-A8E2-01 1 107691405 107691405 A G NTNG1 Missense_Mutation p.K64E 0.15 deleterious(0.02) benign(0.437) TCGA-VQ-A8E2-01 1 13001384 13001384 A C PRAMEF6 Missense_Mutation p.L100R 0.08 deleterious(0) probably_damaging(0.96) TCGA-VQ-A8E2-01 1 152081443 152081443 C T TCHH Missense_Mutation p.R1417H 0.50 unknown(0) TCGA-VQ-A8E2-01 1 152128574 152128574 G A RPTN Missense_Mutation p.P334L 0.11 tolerated(0.07) benign(0.004) TCGA-VQ-A8E2-01 1 156314403 156314403 C G TSACC Missense_Mutation p.L23V 0.11 deleterious_low_confidence(0.01) probably_damaging(0.953) TCGA-VQ-A8E2-01 1 156814883 156814883 G A INSRR Missense_Mutation p.R808C 0.28 deleterious(0) probably_damaging(0.947) TCGA-VQ-A8E2-01 1 15844614 15844614 C T CASP9 Missense_Mutation p.G137S 0.19 tolerated(0.69) benign(0.002) TCGA-VQ-A8E2-01 1 158592894 158592894 T A SPTA1 Missense_Mutation p.H2000L 0.06 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8E2-01 1 160720163 160720163 T G SLAMF7 Missense_Mutation p.L240R 0.10 deleterious(0.01) possibly_damaging(0.736) TCGA-VQ-A8E2-01 1 171254505 171254505 G A FMO1 Missense_Mutation p.R474H 0.26 deleterious(0.01) probably_damaging(0.99) TCGA-VQ-A8E2-01 1 201772817 201772817 C T NAV1 Missense_Mutation p.A1205V 0.10 deleterious(0.01) probably_damaging(0.96) TCGA-VQ-A8E2-01 1 203055020 203055020 G A MYOG Missense_Mutation p.P24S 0.18 tolerated(0.53) possibly_damaging(0.562) TCGA-VQ-A8E2-01 1 228246735 228246735 G A WNT3A Missense_Mutation p.G210S 0.26 deleterious(0) probably_damaging(1) TCGA-VQ-A8E2-01 1 240371488 240371488 G A FMN2 Missense_Mutation p.G1126R 0.14 unknown(0) TCGA-VQ-A8E2-01 1 63999296 63999296 G C EFCAB7 Missense_Mutation p.D220H 0.19 tolerated(0.06) benign(0.033) TCGA-VQ-A8E2-01 1 74808531 74808531 G A FPGT-TNNI3K Missense_Mutation p.A344T 0.32 tolerated(0.2) probably_damaging(0.997) TCGA-VQ-A8E2-01 1 78191404 78191404 C T USP33 Silent p.Q424Q 0.19 TCGA-VQ-A8E2-01 1 78401632 78401632 C G NEXN Missense_Mutation p.S459C 0.11 deleterious(0) probably_damaging(0.927) TCGA-VQ-A8E2-01 20 34776350 34776350 T A EPB41L1 Missense_Mutation p.F319I 0.12 deleterious(0) probably_damaging(1) TCGA-VQ-A8E2-01 20 34776351 34776351 T A EPB41L1 Missense_Mutation p.F319Y 0.12 deleterious(0) probably_damaging(1) TCGA-VQ-A8E2-01 20 34776352 34776352 T A EPB41L1 Missense_Mutation p.F319L 0.12 deleterious(0) probably_damaging(1) TCGA-VQ-A8E2-01 20 3543010 3543010 G A ATRN Missense_Mutation p.R512K 0.07 tolerated(0.92) benign(0.002) TCGA-VQ-A8E2-01 20 60903969 60903969 G A LAMA5 Missense_Mutation p.H1460Y 0.15 benign(0.059) TCGA-VQ-A8E2-01 21 32185461 32185461 G C KRTAP8-1 Missense_Mutation p.S26R 0.10 deleterious_low_confidence(0) probably_damaging(0.96) TCGA-VQ-A8E2-01 22 39262839 39262839 C T CBX6 Missense_Mutation p.R205Q 0.34 deleterious(0) possibly_damaging(0.72) TCGA-VQ-A8E2-01 22 45691480 45691480 C T UPK3A Silent p.S248S 0.29 TCGA-VQ-A8E2-01 2 121747795 121747795 C T GLI2 Silent p.D1435D 0.15 TCGA-VQ-A8E2-01 2 125192222 125192222 T G CNTNAP5 Missense_Mutation p.L231V 0.27 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8E2-01 2 160074022 160074022 G A TANC1 Missense_Mutation p.A1087T 0.11 deleterious(0.02) benign(0.415) TCGA-VQ-A8E2-01 2 196581416 196581416 T C SLC39A10 Silent p.D584D 0.11 TCGA-VQ-A8E2-01 2 209207357 209207357 A G PIKFYVE Missense_Mutation p.I1671V 0.10 deleterious(0.01) possibly_damaging(0.723) TCGA-VQ-A8E2-01 2 21228760 21228760 G A APOB Silent p.D3660D 0.16 TCGA-VQ-A8E2-01 2 216992348 216992348 C G XRCC5 Missense_Mutation p.C296W 0.13 deleterious(0.04) probably_damaging(0.989) TCGA-VQ-A8E2-01 2 218683458 218683458 C T TNS1 Silent p.S1095S 0.25 TCGA-VQ-A8E2-01 2 220026573 220026573 A G SLC23A3 3'UTR 0.14 TCGA-VQ-A8E2-01 2 39285941 39285941 C G SOS1 Missense_Mutation p.R73P 0.17 deleterious(0) probably_damaging(0.989) TCGA-VQ-A8E2-01 2 54856335 54856335 C T SPTBN1 Silent p.S688S 0.11 TCGA-VQ-A8E2-01 2 61522155 61522155 C G USP34 Missense_Mutation p.D1464H 0.20 tolerated(0.07) possibly_damaging(0.846) TCGA-VQ-A8E2-01 2 90458650 90458650 A C CH17-132F21.1 Missense_Mutation p.Q109P 0.02 TCGA-VQ-A8E2-01 3 122552295 122552295 T C DIRC2 Splice_Site p.X278_splice 0.36 TCGA-VQ-A8E2-01 3 126220082 126220082 T C UROC1 Missense_Mutation p.H375R 0.09 tolerated(0.2) probably_damaging(0.999) TCGA-VQ-A8E2-01 3 160099334 160099334 C T IFT80 Silent p.K72K 0.49 TCGA-VQ-A8E2-01 3 161147240 161147240 G A RP11-3P17.4 RNA 0.14 TCGA-VQ-A8E2-01 3 21465499 21465499 A C ZNF385D Missense_Mutation p.Y304D 0.10 deleterious(0) probably_damaging(0.979) TCGA-VQ-A8E2-01 3 38649647 38649647 G A SCN5A Silent p.D331D 0.13 TCGA-VQ-A8E2-01 3 38805071 38805072 - TG SCN10A Frame_Shift_Ins p.I206Qfs*2 0.10 TCGA-VQ-A8E2-01 3 38949575 38949575 A C SCN11A Silent p.T446T 0.08 TCGA-VQ-A8E2-01 3 39435988 39435988 C A SLC25A38 Missense_Mutation p.A238E 0.08 deleterious(0.01) probably_damaging(0.984) TCGA-VQ-A8E2-01 3 46501208 46501208 G A LTF Missense_Mutation p.R49C 0.22 deleterious(0.04) possibly_damaging(0.571) TCGA-VQ-A8E2-01 3 48618753 48618753 T A COL7A1 Silent p.G1613G 0.22 TCGA-VQ-A8E2-01 3 51749086 51749086 C T GRM2 Missense_Mutation p.R433C 0.10 tolerated(0.05) possibly_damaging(0.849) TCGA-VQ-A8E2-01 3 9100117 9100117 A C SRGAP3 Missense_Mutation p.F281V 0.07 deleterious(0) benign(0.031) TCGA-VQ-A8E2-01 4 3768801 3768801 C T ADRA2C Silent p.A156A 0.28 TCGA-VQ-A8E2-01 4 49046859 49046859 G C CWH43 Silent p.L620L 0.08 TCGA-VQ-A8E2-01 5 10280555 10280555 T A CMBL 3'UTR 0.05 TCGA-VQ-A8E2-01 5 115783294 115783294 G A SEMA6A Missense_Mutation p.T703I 0.20 deleterious(0.02) possibly_damaging(0.821) TCGA-VQ-A8E2-01 5 140475855 140475855 C T PCDHB2 Missense_Mutation p.P494L 0.30 deleterious_low_confidence(0.02) benign(0.126) TCGA-VQ-A8E2-01 5 140720293 140720293 C T PCDHGA2 Silent p.G585G 0.07 TCGA-VQ-A8E2-01 5 140774056 140774056 C T PCDHGA8 Missense_Mutation p.A559V 0.09 tolerated_low_confidence(0.32) benign(0.038) TCGA-VQ-A8E2-01 5 169693852 169693852 A C LCP2 Missense_Mutation p.D244E 0.08 tolerated(0.18) probably_damaging(0.996) TCGA-VQ-A8E2-01 5 177657057 177657057 C T PHYKPL Silent p.Q74Q 0.20 TCGA-VQ-A8E2-01 5 1798960 1798960 T C MRPL36 Silent p.L30L 0.18 TCGA-VQ-A8E2-01 5 55088578 55088578 C G DDX4 Nonsense_Mutation p.S471* 0.23 TCGA-VQ-A8E2-01 6 109220981 109220981 G A ARMC2 Missense_Mutation p.R278H 0.13 tolerated(1) benign(0) TCGA-VQ-A8E2-01 6 130454632 130454632 C T L3MBTL3 Missense_Mutation p.R668C 0.10 tolerated(0.17) benign(0.247) TCGA-VQ-A8E2-01 6 139164235 139164235 G C ECT2L Missense_Mutation p.W154C 0.20 tolerated(0.06) probably_damaging(0.976) TCGA-VQ-A8E2-01 6 26250476 26250476 T G HIST1H3F Missense_Mutation p.I120L 0.11 deleterious_low_confidence(0) benign(0.015) TCGA-VQ-A8E2-01 6 30881662 30881662 C G GTF2H4 Missense_Mutation p.L431V 0.44 tolerated(0.08) possibly_damaging(0.788) TCGA-VQ-A8E2-01 6 31322037 31322037 C A HLA-B 3'UTR 0.40 TCGA-VQ-A8E2-01 6 39328204 39328204 T G KIF6 Missense_Mutation p.E683D 0.31 tolerated(0.31) benign(0.022) TCGA-VQ-A8E2-01 6 43492215 43492215 G C XPO5 Missense_Mutation p.C1157W 0.09 deleterious(0) possibly_damaging(0.907) TCGA-VQ-A8E2-01 6 57012446 57012446 C T ZNF451 Silent p.H521H 0.08 TCGA-VQ-A8E2-01 7 104716496 104716496 C T KMT2E Missense_Mutation p.R246C 0.25 deleterious(0) possibly_damaging(0.689) TCGA-VQ-A8E2-01 7 128845063 128845063 A C SMO Missense_Mutation p.K186T 0.34 deleterious(0.03) possibly_damaging(0.465) TCGA-VQ-A8E2-01 7 135303240 135303240 G A NUP205 Silent p.E1284E 0.09 TCGA-VQ-A8E2-01 7 20198861 20198861 A T MACC1 Missense_Mutation p.Y375N 0.29 deleterious(0) possibly_damaging(0.86) TCGA-VQ-A8E2-01 7 73646518 73646518 G A RFC2 Missense_Mutation p.A328V 0.25 tolerated(0.64) benign(0.008) TCGA-VQ-A8E2-01 7 75608803 75608803 C T POR Missense_Mutation p.T91M 0.10 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8E2-01 7 89929259 89929259 G A C7orf63 Missense_Mutation p.V646I 0.14 tolerated(1) benign(0.138) TCGA-VQ-A8E2-01 7 98609747 98609747 A C TRRAP Missense_Mutation p.K3783N 0.10 possibly_damaging(0.531) TCGA-VQ-A8E2-01 8 13356838 13356838 C A DLC1 Missense_Mutation p.S248I 0.16 tolerated_low_confidence(0.19) benign(0.001) TCGA-VQ-A8E2-01 8 144941849 144941849 T G EPPK1 Missense_Mutation p.D1858A 0.08 benign(0.001) TCGA-VQ-A8E2-01 8 42256279 42256279 G T VDAC3 Missense_Mutation p.G57V 0.06 deleterious(0) probably_damaging(0.958) TCGA-VQ-A8E2-01 9 108483827 108483828 - T TMEM38B Frame_Shift_Ins p.C96Lfs*4 0.16 TCGA-VQ-A8E2-01 9 119094664 119094664 C T PAPPA Missense_Mutation p.T1105M 0.15 deleterious(0) possibly_damaging(0.791) TCGA-VQ-A8E2-01 9 124519371 124519371 G A DAB2IP Missense_Mutation p.D120N 0.18 deleterious(0.02) possibly_damaging(0.794) TCGA-VQ-A8E2-01 9 140196407 140196407 C T NRARP 5'UTR 0.23 TCGA-VQ-A8E2-01 9 140995594 140995594 G A CACNA1B Intron 0.25 TCGA-VQ-A8E2-01 9 84268917 84268917 G A TLE1 Missense_Mutation p.A90V 0.12 tolerated(0.06) possibly_damaging(0.685) TCGA-VQ-A8E2-01 X 140996328 140996328 A C MAGEC1 Missense_Mutation p.K1046N 0.30 deleterious(0.01) unknown(0) TCGA-VQ-A8E2-01 X 151284076 151284076 G T RP11-1007I13.4 Intron 0.50 TCGA-VQ-A8E2-01 X 19425334 19425334 A C MAP3K15 Missense_Mutation p.Y606D 0.42 tolerated(0.25) probably_damaging(0.934) TCGA-VQ-A8E2-01 X 36156550 36156550 T G CHDC2 Missense_Mutation p.L410R 0.32 deleterious(0) probably_damaging(0.99) TCGA-VQ-A8E2-01 X 37027568 37027568 G A FAM47C Missense_Mutation p.R362H 0.24 tolerated(0.12) probably_damaging(0.949) TCGA-VQ-A8E2-01 X 54950059 54950059 A G TRO Missense_Mutation p.Q365R 0.33 deleterious(0.04) unknown(0) TCGA-VQ-A8E2-01 X 73964227 73964227 T G KIAA2022 Missense_Mutation p.K55N 0.44 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-VQ-A8E3-01 10 104377066 104377066 C T SUFU Missense_Mutation p.R393W 0.23 deleterious(0) probably_damaging(1) TCGA-VQ-A8E3-01 10 104596942 104596942 T - CYP17A1 Frame_Shift_Del p.K59Nfs*16 0.16 TCGA-VQ-A8E3-01 10 105823545 105823545 G A COL17A1 Silent p.C266C 0.27 TCGA-VQ-A8E3-01 10 106207520 106207520 C T CCDC147 Missense_Mutation p.A774V 0.31 tolerated(0.1) possibly_damaging(0.627) TCGA-VQ-A8E3-01 10 116881557 116881557 C T ATRNL1 Missense_Mutation p.P158S 0.15 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8E3-01 10 118434728 118434728 C T HSPA12A Missense_Mutation p.R531H 0.15 deleterious(0) probably_damaging(0.977) TCGA-VQ-A8E3-01 10 121336629 121336629 C - TIAL1 Frame_Shift_Del p.G292Vfs*7 0.17 TCGA-VQ-A8E3-01 10 124909355 124909355 G A HMX2 Missense_Mutation p.A180T 0.32 deleterious(0) possibly_damaging(0.827) TCGA-VQ-A8E3-01 10 126692017 126692017 G - CTBP2 Frame_Shift_Del p.L575Wfs*17 0.22 TCGA-VQ-A8E3-01 10 126716053 126716053 G A CTBP2 Silent p.Y92Y 0.19 TCGA-VQ-A8E3-01 10 129904466 129904466 T C MKI67 Missense_Mutation p.S1880G 0.22 tolerated(0.59) possibly_damaging(0.866) TCGA-VQ-A8E3-01 10 135340982 135340982 G T CYP2E1 Missense_Mutation p.S28I 0.30 deleterious(0.03) possibly_damaging(0.83) TCGA-VQ-A8E3-01 10 14890795 14890796 - A HSPA14 Frame_Shift_Ins p.N95Kfs*7 0.15 TCGA-VQ-A8E3-01 10 14913587 14913588 TA - HSPA14 Frame_Shift_Del p.I505* 0.23 TCGA-VQ-A8E3-01 10 17083192 17083192 T A CUBN Missense_Mutation p.Q1286L 0.19 tolerated(0.08) benign(0.005) TCGA-VQ-A8E3-01 10 22048111 22048111 C T DNAJC1 Silent p.P528P 0.18 TCGA-VQ-A8E3-01 10 27382726 27382726 G A ANKRD26 Missense_Mutation p.T82M 0.23 deleterious(0) probably_damaging(1) TCGA-VQ-A8E3-01 10 28971107 28971107 G A BAMBI Missense_Mutation p.R187Q 0.21 deleterious(0.01) probably_damaging(0.964) TCGA-VQ-A8E3-01 10 32197830 32197830 T C ARHGAP12 5'UTR 0.28 TCGA-VQ-A8E3-01 10 34400355 34400355 T C PARD3 Silent p.G1271G 0.17 TCGA-VQ-A8E3-01 10 34663884 34663884 G A PARD3 Missense_Mutation p.S529L 0.19 deleterious(0) benign(0.118) TCGA-VQ-A8E3-01 10 35855016 35855016 A G CCNY Missense_Mutation p.Y271C 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A8E3-01 10 429971 429971 G A DIP2C Silent p.N624N 0.22 TCGA-VQ-A8E3-01 10 43606734 43606734 A G RET Missense_Mutation p.N448S 0.19 tolerated(0.48) benign(0.008) TCGA-VQ-A8E3-01 10 49667787 49667787 G A ARHGAP22 Missense_Mutation p.A216V 0.23 deleterious(0.01) possibly_damaging(0.79) TCGA-VQ-A8E3-01 10 50857579 50857579 C T CHAT Nonsense_Mutation p.R470* 0.24 TCGA-VQ-A8E3-01 10 5929888 5929888 G - ANKRD16 Frame_Shift_Del p.L153Sfs*57 0.20 TCGA-VQ-A8E3-01 10 6063442 6063442 T C IL2RA Silent p.P194P 0.08 TCGA-VQ-A8E3-01 10 60936623 60936623 C T PHYHIPL Missense_Mutation p.P4S 0.18 deleterious_low_confidence(0.04) benign(0.098) TCGA-VQ-A8E3-01 10 63852870 63852870 A G ARID5B 3'UTR 0.16 TCGA-VQ-A8E3-01 10 71152036 71152036 G A HK1 Missense_Mutation p.E735K 0.30 tolerated(0.16) benign(0.007) TCGA-VQ-A8E3-01 10 72358049 72358049 C - PRF1 Frame_Shift_Del p.L478* 0.09 TCGA-VQ-A8E3-01 10 75435702 75435702 G A AGAP5 Missense_Mutation p.T239I 0.15 deleterious(0) possibly_damaging(0.895) TCGA-VQ-A8E3-01 10 75566081 75566081 C T NDST2 Missense_Mutation p.R467H 0.18 tolerated(0.14) probably_damaging(0.993) TCGA-VQ-A8E3-01 10 7618917 7618918 - G ITIH5 Frame_Shift_Ins p.S493Qfs*44 0.22 TCGA-VQ-A8E3-01 10 7621932 7621932 C T ITIH5 Missense_Mutation p.V402I 0.20 tolerated(1) benign(0.003) TCGA-VQ-A8E3-01 10 76603087 76603087 C T KAT6B Missense_Mutation p.R158C 0.40 probably_damaging(0.987) TCGA-VQ-A8E3-01 10 76788300 76788300 G A KAT6B Missense_Mutation p.E1240K 0.18 possibly_damaging(0.89) TCGA-VQ-A8E3-01 10 7791216 7791216 C T ITIH2 Silent p.H920H 0.19 TCGA-VQ-A8E3-01 10 79397043 79397043 G T KCNMA1 Missense_Mutation p.H120N 0.16 tolerated(0.52) benign(0.001) TCGA-VQ-A8E3-01 10 83635289 83635289 A G NRG3 Missense_Mutation p.T65A 0.31 tolerated(0.3) probably_damaging(0.953) TCGA-VQ-A8E3-01 10 85933640 85933640 T C C10orf99 Silent p.C11C 0.16 TCGA-VQ-A8E3-01 10 88768819 88768819 A G RP11-96C23.10 3'Flank 0.18 TCGA-VQ-A8E3-01 10 88930276 88930276 G C FAM35A Missense_Mutation p.A559P 0.42 deleterious(0) possibly_damaging(0.898) TCGA-VQ-A8E3-01 10 95660776 95660776 C T SLC35G1 Silent p.S209S 0.18 TCGA-VQ-A8E3-01 10 96014779 96014779 T G PLCE1 Missense_Mutation p.L1176R 0.21 tolerated(0.13) possibly_damaging(0.873) TCGA-VQ-A8E3-01 10 96484278 96484278 C T CYP2C18 Silent p.Y379Y 0.16 TCGA-VQ-A8E3-01 10 97096390 97096390 C T SORBS1 Missense_Mutation p.R1176Q 0.17 tolerated_low_confidence(0.87) benign(0.007) TCGA-VQ-A8E3-01 10 97951715 97951715 T - BLNK 3'UTR 0.26 TCGA-VQ-A8E3-01 10 98742785 98742785 A - C10orf12 Frame_Shift_Del p.E549Kfs*54 0.18 TCGA-VQ-A8E3-01 10 99330056 99330056 C T UBTD1 Missense_Mutation p.R154C 0.25 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8E3-01 10 99527305 99527305 T C SFRP5 Missense_Mutation p.Y307C 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.593) TCGA-VQ-A8E3-01 10 99968976 99968976 G T R3HCC1L Missense_Mutation p.G369C 0.17 tolerated(0.23) benign(0.008) TCGA-VQ-A8E3-01 11 102647083 102647083 G A MMP10 Missense_Mutation p.A287V 0.36 tolerated(0.32) benign(0.001) TCGA-VQ-A8E3-01 11 104821768 104821768 T C CASP4 Missense_Mutation p.T144A 0.21 tolerated(0.12) possibly_damaging(0.61) TCGA-VQ-A8E3-01 11 10580557 10580559 TTC - LYVE1 3'UTR 0.50 TCGA-VQ-A8E3-01 11 105836770 105836770 C T GRIA4 Intron 0.18 TCGA-VQ-A8E3-01 11 107299560 107299560 T - CWF19L2 Frame_Shift_Del p.E467Nfs*22 0.25 TCGA-VQ-A8E3-01 11 10824668 10824668 A G EIF4G2 Missense_Mutation p.V302A 0.23 deleterious(0.04) benign(0.04) TCGA-VQ-A8E3-01 11 118526576 118526576 T G PHLDB1 Missense_Mutation p.F1323V 0.32 tolerated(0.15) benign(0.028) TCGA-VQ-A8E3-01 11 120008163 120008163 A G TRIM29 Missense_Mutation p.S193P 0.21 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8E3-01 11 123754893 123754893 T C TMEM225 Missense_Mutation p.I118V 0.28 tolerated(0.41) benign(0.002) TCGA-VQ-A8E3-01 11 124744018 124744019 AC - ROBO3 Frame_Shift_Del p.T615Sfs*24 0.24 TCGA-VQ-A8E3-01 11 124747413 124747413 A C ROBO3 Splice_Site p.X949_splice 0.76 TCGA-VQ-A8E3-01 11 129788507 129788507 G A PRDM10 Missense_Mutation p.T718M 0.04 deleterious(0.04) possibly_damaging(0.534) TCGA-VQ-A8E3-01 11 132812897 132812897 C T OPCML Missense_Mutation p.V31M 0.30 deleterious(0.02) possibly_damaging(0.886) TCGA-VQ-A8E3-01 11 133790559 133790559 A G IGSF9B Missense_Mutation p.S1021P 0.29 deleterious_low_confidence(0.02) benign(0.345) TCGA-VQ-A8E3-01 11 17139177 17139177 C T PIK3C2A Missense_Mutation p.R1026Q 0.13 deleterious(0.02) benign(0.229) TCGA-VQ-A8E3-01 11 17428654 17428654 C A ABCC8 Missense_Mutation p.E981D 0.22 tolerated(0.34) benign(0.001) TCGA-VQ-A8E3-01 11 17741935 17741935 G A MYOD1 Silent p.P202P 0.42 TCGA-VQ-A8E3-01 11 19255993 19255993 G A E2F8 Missense_Mutation p.T281M 0.29 deleterious(0) probably_damaging(0.986) TCGA-VQ-A8E3-01 11 32460560 32460560 A G WT1 5'Flank 0.17 TCGA-VQ-A8E3-01 11 36614223 36614223 T - RAG2 Frame_Shift_Del p.K499Sfs*4 0.28 TCGA-VQ-A8E3-01 11 43836987 43836987 T C HSD17B12 Missense_Mutation p.V131A 0.35 deleterious(0) probably_damaging(1) TCGA-VQ-A8E3-01 11 4510446 4510446 C A OR52K1 Missense_Mutation p.L106I 0.24 tolerated(1) benign(0.042) TCGA-VQ-A8E3-01 11 47178706 47178706 A G C11orf49 Missense_Mutation p.E195G 0.26 deleterious(0.04) benign(0.281) TCGA-VQ-A8E3-01 11 47290160 47290160 C T NR1H3 Silent p.S419S 0.28 TCGA-VQ-A8E3-01 11 49179535 49179535 T - FOLH1 Frame_Shift_Del p.S501Vfs*12 0.20 TCGA-VQ-A8E3-01 11 55322454 55322454 C A OR4C15 Silent p.P224P 0.68 TCGA-VQ-A8E3-01 11 55606920 55606920 T G OR5D16 Silent p.P231P 0.20 TCGA-VQ-A8E3-01 11 55703697 55703697 G - OR5I1 Frame_Shift_Del p.M61Cfs*11 0.22 TCGA-VQ-A8E3-01 11 57004348 57004348 G A APLNR Missense_Mutation p.T44M 0.61 tolerated(0.13) benign(0.135) TCGA-VQ-A8E3-01 11 59271472 59271472 A G OR4D11 Missense_Mutation p.T142A 0.30 tolerated(0.24) benign(0.008) TCGA-VQ-A8E3-01 11 61053801 61053801 G A VWCE Missense_Mutation p.R176C 0.32 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8E3-01 11 61096839 61096839 T C DDB1 Missense_Mutation p.Y182C 0.26 deleterious(0) probably_damaging(0.981) TCGA-VQ-A8E3-01 11 61897406 61897406 T C INCENP Missense_Mutation p.M136T 0.29 tolerated(0.68) unknown(0) TCGA-VQ-A8E3-01 11 62286933 62286933 T - AHNAK Frame_Shift_Del p.S4986Afs*20 0.21 TCGA-VQ-A8E3-01 11 62649529 62649529 A - SLC3A2 Frame_Shift_Del p.K301Rfs*31 0.31 TCGA-VQ-A8E3-01 11 63313709 63313709 A - RARRES3 Frame_Shift_Del p.A162Rfs*56 0.30 TCGA-VQ-A8E3-01 11 64939929 64939929 G T SPDYC Missense_Mutation p.E123D 0.29 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8E3-01 11 65146935 65146935 A G SLC25A45 Missense_Mutation p.L84P 0.14 deleterious(0) probably_damaging(1) TCGA-VQ-A8E3-01 11 65365907 65365907 C T MAP3K11 Missense_Mutation p.R800Q 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.885) TCGA-VQ-A8E3-01 11 66029414 66029414 C T KLC2 Missense_Mutation p.R144C 0.24 deleterious(0.01) benign(0.287) TCGA-VQ-A8E3-01 11 66032519 66032519 C T KLC2 Silent p.H414H 0.30 TCGA-VQ-A8E3-01 11 66243435 66243435 G A PELI3 Missense_Mutation p.G403S 0.32 tolerated(0.33) probably_damaging(0.997) TCGA-VQ-A8E3-01 11 67205904 67205904 G A CORO1B Silent p.G471G 0.28 TCGA-VQ-A8E3-01 11 67219060 67219060 G A GPR152 Missense_Mutation p.T379M 0.29 tolerated_low_confidence(0.3) benign(0.009) TCGA-VQ-A8E3-01 11 67257799 67257799 T C AIP Missense_Mutation p.S220P 0.29 deleterious(0.02) possibly_damaging(0.548) TCGA-VQ-A8E3-01 11 67379956 67379956 G A NDUFV1 3'UTR 0.25 TCGA-VQ-A8E3-01 11 67933489 67933489 T C SUV420H1 Intron 0.38 TCGA-VQ-A8E3-01 11 71238932 71238932 G A KRTAP5-7 3'UTR 0.41 TCGA-VQ-A8E3-01 11 71511694 71511694 C A FAM86C1 3'UTR 0.15 TCGA-VQ-A8E3-01 11 72422080 72422080 C T ARAP1 Missense_Mutation p.R400Q 0.33 deleterious(0) possibly_damaging(0.861) TCGA-VQ-A8E3-01 11 74015412 74015412 A G P4HA3 Silent p.P82P 0.29 TCGA-VQ-A8E3-01 11 7655737 7655737 A G PPFIBP2 Missense_Mutation p.K383R 0.26 tolerated(0.35) benign(0.131) TCGA-VQ-A8E3-01 11 78380728 78380728 C A TENM4 Missense_Mutation p.G2221V 0.18 deleterious(0) probably_damaging(0.96) TCGA-VQ-A8E3-01 11 85437254 85437254 C A SYTL2 Missense_Mutation p.E82D 0.24 deleterious_low_confidence(0) possibly_damaging(0.54) TCGA-VQ-A8E3-01 11 88068108 88068108 A - CTSC Frame_Shift_Del p.F105Lfs*10 0.22 TCGA-VQ-A8E3-01 11 9853776 9853776 T C SBF2 Missense_Mutation p.Q1216R 0.22 tolerated(0.26) benign(0.005) TCGA-VQ-A8E3-01 11 9853865 9853865 C A SBF2 Missense_Mutation p.K1186N 0.14 deleterious(0) benign(0.333) TCGA-VQ-A8E3-01 12 10134689 10134689 G A CLEC12A Missense_Mutation p.R211H 0.23 tolerated(0.15) benign(0.021) TCGA-VQ-A8E3-01 12 104714933 104714933 G A TXNRD1 Missense_Mutation p.A352T 0.33 deleterious(0) probably_damaging(1) TCGA-VQ-A8E3-01 12 110246205 110246205 G T TRPV4 Missense_Mutation p.P152H 0.48 tolerated(0.16) benign(0.005) TCGA-VQ-A8E3-01 12 11174886 11174886 G A TAS2R19 Silent p.S95S 0.23 TCGA-VQ-A8E3-01 12 113645954 113645954 G A IQCD Silent p.L6L 0.32 TCGA-VQ-A8E3-01 12 119419697 119419697 G A SRRM4 Missense_Mutation p.V4I 0.16 deleterious_low_confidence(0.01) unknown(0) TCGA-VQ-A8E3-01 12 122018773 122018773 G - KDM2B Frame_Shift_Del p.P15Hfs*92 0.24 TCGA-VQ-A8E3-01 12 123467226 123467227 - C ARL6IP4 3'UTR 0.25 TCGA-VQ-A8E3-01 12 123472401 123472401 G A PITPNM2 Silent p.D1015D 0.24 TCGA-VQ-A8E3-01 12 12514193 12514193 G A LOH12CR1 Missense_Mutation p.A38T 0.30 tolerated(0.11) benign(0.372) TCGA-VQ-A8E3-01 12 130845814 130845814 T C PIWIL1 Silent p.C585C 0.25 TCGA-VQ-A8E3-01 12 133365728 133365728 G A GOLGA3 Missense_Mutation p.A899V 0.26 tolerated(0.79) benign(0.006) TCGA-VQ-A8E3-01 12 133393285 133393285 C T GOLGA3 Missense_Mutation p.D83N 0.06 tolerated_low_confidence(0.12) benign(0.105) TCGA-VQ-A8E3-01 12 13526075 13526075 G T C12orf36 3'UTR 0.31 TCGA-VQ-A8E3-01 12 1967757 1967757 G A CACNA2D4 Missense_Mutation p.T665M 0.58 deleterious(0.03) benign(0.156) TCGA-VQ-A8E3-01 12 21679400 21679400 G A C12orf39 5'UTR 0.16 TCGA-VQ-A8E3-01 12 26639169 26639169 G A ITPR2 Silent p.C1893C 0.14 TCGA-VQ-A8E3-01 12 27933986 27933986 C T KLHL42 Silent p.V241V 0.48 TCGA-VQ-A8E3-01 12 2926442 2926442 T A ITFG2 Missense_Mutation p.N50K 0.13 tolerated(0.12) benign(0.018) TCGA-VQ-A8E3-01 12 2968302 2968302 A - FOXM1 Frame_Shift_Del p.F636Lfs*35 0.20 TCGA-VQ-A8E3-01 12 38714646 38714646 T C ALG10B Silent p.N351N 0.27 TCGA-VQ-A8E3-01 12 40441922 40441922 A G SLC2A13 Missense_Mutation p.I216T 0.44 deleterious(0) probably_damaging(0.951) TCGA-VQ-A8E3-01 12 46231310 46231310 G C ARID2 Missense_Mutation p.A384P 0.28 tolerated(0.12) probably_damaging(0.914) TCGA-VQ-A8E3-01 12 48919880 48919880 G A OR8S1 Missense_Mutation p.A156T 0.27 deleterious(0.05) possibly_damaging(0.547) TCGA-VQ-A8E3-01 12 49434140 49434141 TC GTCG KMT2D Frame_Shift_Ins p.R2471Pfs*15 0.27 TCGA-VQ-A8E3-01 12 51759292 51759292 G A GALNT6 Missense_Mutation p.R246W 0.33 deleterious(0.01) probably_damaging(0.991) TCGA-VQ-A8E3-01 12 54448914 54448914 G T HOXC4 Silent p.P240P 0.27 TCGA-VQ-A8E3-01 12 57637643 57637643 G A STAC3 Silent p.T349T 0.36 TCGA-VQ-A8E3-01 12 57921634 57921634 A G MBD6 Missense_Mutation p.D747G 0.28 deleterious_low_confidence(0) unknown(0) TCGA-VQ-A8E3-01 12 58114607 58114607 A G OS9 Missense_Mutation p.Q640R 0.32 deleterious(0.01) probably_damaging(0.971) TCGA-VQ-A8E3-01 12 58142287 58142287 C A CDK4 3'UTR 0.32 TCGA-VQ-A8E3-01 12 674594 674594 G T NINJ2 Intron 0.20 TCGA-VQ-A8E3-01 12 6936021 6936022 - G GPR162 Frame_Shift_Ins p.L476Afs*36 0.29 TCGA-VQ-A8E3-01 12 69991007 69991007 G A CCT2 Missense_Mutation p.V352I 0.35 tolerated(1) benign(0.003) TCGA-VQ-A8E3-01 12 7548980 7548980 G A CD163L1 Silent p.G587G 0.27 TCGA-VQ-A8E3-01 12 7882239 7882239 G A CLEC4C Missense_Mutation p.H199Y 0.20 deleterious(0.01) benign(0.065) TCGA-VQ-A8E3-01 12 80651648 80651648 A - OTOGL Frame_Shift_Del p.T578Pfs*5 0.19 TCGA-VQ-A8E3-01 12 8391305 8391305 T C RP11-266K4.9 Intron 0.26 TCGA-VQ-A8E3-01 12 85279796 85279796 A G SLC6A15 Missense_Mutation p.L114P 0.16 deleterious(0) probably_damaging(0.95) TCGA-VQ-A8E3-01 12 85411373 85411373 C T TSPAN19 Silent p.Q152Q 0.33 TCGA-VQ-A8E3-01 12 8988101 8988101 A C A2ML1 Splice_Site p.X162_splice 0.21 TCGA-VQ-A8E3-01 12 9010550 9010550 C T A2ML1 Missense_Mutation p.A1039V 0.18 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8E3-01 12 9010656 9010656 C T A2ML1 Silent p.G1074G 0.28 TCGA-VQ-A8E3-01 12 9094470 9094470 C - M6PR Frame_Shift_Del p.D260Mfs*63 0.18 TCGA-VQ-A8E3-01 12 92818450 92818450 T G CLLU1 5'UTR 0.25 TCGA-VQ-A8E3-01 12 95927798 95927798 A - USP44 Frame_Shift_Del p.C79Vfs*9 0.13 TCGA-VQ-A8E3-01 12 98928134 98928134 A - TMPO 3'UTR 0.13 TCGA-VQ-A8E3-01 13 109672218 109672218 G T MYO16 Missense_Mutation p.D897Y 0.09 deleterious(0) probably_damaging(0.971) TCGA-VQ-A8E3-01 13 115012461 115012461 A G CDC16 Missense_Mutation p.H318R 0.15 tolerated(0.64) benign(0.076) TCGA-VQ-A8E3-01 13 21166475 21166475 C T IFT88 Silent p.G119G 0.35 TCGA-VQ-A8E3-01 13 21171185 21171186 - AG IFT88 Frame_Shift_Ins p.V186Efs*4 0.33 TCGA-VQ-A8E3-01 13 21205247 21205247 T - IFT88 Intron 0.36 TCGA-VQ-A8E3-01 13 25745157 25745157 T C AMER2 Missense_Mutation p.M201V 0.28 tolerated(0.1) benign(0.008) TCGA-VQ-A8E3-01 13 25835881 25835881 A G MTMR6 Silent p.D217D 0.19 TCGA-VQ-A8E3-01 13 46357891 46357891 G A SIAH3 Missense_Mutation p.T146M 0.60 deleterious(0.04) benign(0.412) TCGA-VQ-A8E3-01 13 49030385 49030385 G A RB1 Silent p.T620T 0.53 TCGA-VQ-A8E3-01 13 49918313 49918314 AC - CAB39L Splice_Site p.X208_splice 0.33 TCGA-VQ-A8E3-01 13 61103068 61103068 T C TDRD3 Missense_Mutation p.V570A 0.41 tolerated(0.46) benign(0.004) TCGA-VQ-A8E3-01 13 67800352 67800353 - T PCDH9 Frame_Shift_Ins p.P741Tfs*5 0.14 TCGA-VQ-A8E3-01 13 77847642 77847642 T C MYCBP2 Missense_Mutation p.T266A 0.19 possibly_damaging(0.583) TCGA-VQ-A8E3-01 14 100126679 100126679 G A HHIPL1 Missense_Mutation p.V480M 0.32 deleterious(0.02) probably_damaging(0.996) TCGA-VQ-A8E3-01 14 100363520 100363520 A G EML1 Missense_Mutation p.Y258C 0.08 deleterious(0) possibly_damaging(0.823) TCGA-VQ-A8E3-01 14 100992226 100992226 C T WDR25 Missense_Mutation p.A374V 0.43 deleterious(0) probably_damaging(0.988) TCGA-VQ-A8E3-01 14 102323182 102323182 A G PPP2R5C Missense_Mutation p.N116S 0.13 tolerated(0.11) benign(0.002) TCGA-VQ-A8E3-01 14 102496219 102496219 G A DYNC1H1 Missense_Mutation p.A3236T 0.32 probably_damaging(1) TCGA-VQ-A8E3-01 14 103803041 103803041 T C EIF5 Missense_Mutation p.L61P 0.31 deleterious(0) possibly_damaging(0.845) TCGA-VQ-A8E3-01 14 104640200 104640200 G A KIF26A Silent p.P675P 0.18 TCGA-VQ-A8E3-01 14 105208236 105208236 C T ADSSL1 Missense_Mutation p.T325M 0.23 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8E3-01 14 105412774 105412774 G A AHNAK2 Missense_Mutation p.A3005V 0.33 benign(0.061) TCGA-VQ-A8E3-01 14 20216122 20216122 A G OR4Q3 Missense_Mutation p.Y179C 0.35 deleterious(0) probably_damaging(0.961) TCGA-VQ-A8E3-01 14 20784575 20784575 A G CCNB1IP1 Silent p.H36H 0.17 TCGA-VQ-A8E3-01 14 22133746 22133746 G - OR4E2 Frame_Shift_Del p.G152Vfs*6 0.16 TCGA-VQ-A8E3-01 14 22337522 22337522 G A TRAV13-1 Missense_Mutation p.A105T 0.28 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8E3-01 14 23745034 23745034 C A HOMEZ Missense_Mutation p.R468M 0.21 deleterious(0.04) probably_damaging(0.954) TCGA-VQ-A8E3-01 14 23873586 23873586 C A MYH6 Missense_Mutation p.E218D 0.29 deleterious(0) probably_damaging(0.928) TCGA-VQ-A8E3-01 14 24035606 24035606 G A AP1G2 Missense_Mutation p.P118S 0.41 tolerated(0.05) benign(0.077) TCGA-VQ-A8E3-01 14 24633110 24633110 A G IRF9 Silent p.G173G 0.08 TCGA-VQ-A8E3-01 14 42360637 42360637 T - LRFN5 Frame_Shift_Del p.L525Wfs*5 0.23 TCGA-VQ-A8E3-01 14 55618477 55618477 A T DLGAP5 Silent p.P768P 0.20 TCGA-VQ-A8E3-01 14 63316514 63316514 C T KCNH5 Missense_Mutation p.A476T 0.21 tolerated(0.21) benign(0.01) TCGA-VQ-A8E3-01 14 64467407 64467408 AA - SYNE2 Frame_Shift_Del p.E1205Afs*6 0.19 TCGA-VQ-A8E3-01 14 65263331 65263331 G A SPTB Missense_Mutation p.R429W 0.27 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8E3-01 14 67647600 67647600 C T GPHN Silent p.Y752Y 0.19 TCGA-VQ-A8E3-01 14 73409772 73409772 G A DCAF4 Missense_Mutation p.A168T 0.28 tolerated(0.61) benign(0.01) TCGA-VQ-A8E3-01 14 76249563 76249563 G A TTLL5 Silent p.L892L 0.33 TCGA-VQ-A8E3-01 14 88974276 88974276 C T PTPN21 Missense_Mutation p.A147T 0.34 deleterious(0) probably_damaging(1) TCGA-VQ-A8E3-01 14 90752797 90752797 G A NRDE2 Silent p.T1066T 0.27 TCGA-VQ-A8E3-01 14 92472197 92472197 T - TRIP11 Frame_Shift_Del p.N708Tfs*7 0.26 TCGA-VQ-A8E3-01 14 94103564 94103564 C G UNC79 Missense_Mutation p.Q1769E 0.19 tolerated_low_confidence(0.08) benign(0.001) TCGA-VQ-A8E3-01 14 94417418 94417418 G T ASB2 Silent p.A269A 0.23 TCGA-VQ-A8E3-01 14 94568924 94568924 T C IFI27L1 3'UTR 0.26 TCGA-VQ-A8E3-01 14 95590652 95590652 A G DICER1 Silent p.D419D 0.34 TCGA-VQ-A8E3-01 15 22868946 22868946 C T TUBGCP5 Missense_Mutation p.R940W 0.18 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8E3-01 15 22940764 22940764 C A CYFIP1 Nonsense_Mutation p.Y343* 0.16 TCGA-VQ-A8E3-01 15 25223377 25223377 G T SNRPN Missense_Mutation p.M199I 0.25 deleterious(0) unknown(0) TCGA-VQ-A8E3-01 15 25924712 25924712 G - ATP10A Frame_Shift_Del p.L1426Cfs*66 0.23 TCGA-VQ-A8E3-01 15 28451391 28451391 G A HERC2 Missense_Mutation p.L2403F 0.18 benign(0.441) TCGA-VQ-A8E3-01 15 29406220 29406220 G A APBA2 Splice_Site p.X726_splice 0.27 TCGA-VQ-A8E3-01 15 30010715 30010715 C A TJP1 Missense_Mutation p.A1211S 0.24 tolerated_low_confidence(0.26) benign(0.006) TCGA-VQ-A8E3-01 15 33842398 33842398 C T RYR3 Nonsense_Mutation p.R285* 0.67 TCGA-VQ-A8E3-01 15 34396216 34396216 A - PGBD4 Frame_Shift_Del p.K496Sfs*109 0.18 TCGA-VQ-A8E3-01 15 39544453 39544453 A G C15orf54 Silent p.L39L 0.05 TCGA-VQ-A8E3-01 15 40246159 40246159 A - EIF2AK4 Frame_Shift_Del p.R192Gfs*43 0.28 TCGA-VQ-A8E3-01 15 41687117 41687117 C T NDUFAF1 Silent p.T233T 0.27 TCGA-VQ-A8E3-01 15 41870153 41870153 G T TYRO3 Missense_Mutation p.M784I 0.33 tolerated(0.19) benign(0.326) TCGA-VQ-A8E3-01 15 42042041 42042041 A - MGA Frame_Shift_Del p.V2081Wfs*21 0.17 TCGA-VQ-A8E3-01 15 42139539 42139539 T A PLA2G4B Nonsense_Mutation p.L882* 0.38 TCGA-VQ-A8E3-01 15 42481359 42481359 T C VPS39 Missense_Mutation p.T99A 0.35 tolerated(0.44) benign(0.008) TCGA-VQ-A8E3-01 15 42529664 42529664 C T TMEM87A Silent p.A278A 0.26 TCGA-VQ-A8E3-01 15 43766935 43766937 AGG - TP53BP1 In_Frame_Del p.P372del 0.10 TCGA-VQ-A8E3-01 15 44028301 44028301 C A RNU6-354P 5'Flank 0.33 TCGA-VQ-A8E3-01 15 44876228 44876228 G A SPG11 Missense_Mutation p.R1884C 0.32 tolerated(0.29) benign(0.193) TCGA-VQ-A8E3-01 15 45464475 45464475 G A SHF Missense_Mutation p.R279W 0.44 deleterious(0) probably_damaging(0.976) TCGA-VQ-A8E3-01 15 50776541 50776541 G A USP8 Missense_Mutation p.D625N 0.43 tolerated(0.12) benign(0.016) TCGA-VQ-A8E3-01 15 51773073 51773073 A C DMXL2 Missense_Mutation p.L2077R 0.28 deleterious(0) probably_damaging(1) TCGA-VQ-A8E3-01 15 56386686 56386686 A G RFX7 Silent p.H1080H 0.35 TCGA-VQ-A8E3-01 15 60768349 60768349 T - NARG2 Frame_Shift_Del p.N20Mfs*21 0.29 TCGA-VQ-A8E3-01 15 62256145 62256145 C T VPS13C Missense_Mutation p.V1074I 0.27 tolerated(0.18) benign(0.006) TCGA-VQ-A8E3-01 15 70351076 70351077 - T TLE3 Frame_Shift_Ins p.D282Rfs*14 0.18 TCGA-VQ-A8E3-01 15 71953006 71953006 C T THSD4 Silent p.V430V 0.26 TCGA-VQ-A8E3-01 15 72580897 72580897 G A CELF6 Missense_Mutation p.P386S 0.24 tolerated(0.15) benign(0.036) TCGA-VQ-A8E3-01 15 75651712 75651712 A G MAN2C1 Silent p.T672T 0.11 TCGA-VQ-A8E3-01 15 75982078 75982078 C - CSPG4 Frame_Shift_Del p.G443Afs*16 0.27 TCGA-VQ-A8E3-01 15 79298592 79298592 C T RASGRF1 Missense_Mutation p.A684T 0.33 deleterious(0) benign(0.356) TCGA-VQ-A8E3-01 15 79755622 79755622 A G KIAA1024 Missense_Mutation p.N838D 0.23 tolerated(0.06) benign(0.257) TCGA-VQ-A8E3-01 15 85334039 85334039 T C ZNF592 Missense_Mutation p.V775A 0.30 tolerated(1) benign(0.003) TCGA-VQ-A8E3-01 15 89871987 89871988 - C POLG Frame_Shift_Ins p.P367Afs*21 0.28 TCGA-VQ-A8E3-01 16 14738273 14738273 G A BFAR Missense_Mutation p.G24S 0.30 tolerated(1) benign(0) TCGA-VQ-A8E3-01 16 18826820 18826820 C T SMG1 Missense_Mutation p.V3486I 0.25 tolerated(0.42) benign(0) TCGA-VQ-A8E3-01 16 18856778 18856778 A G SMG1 Silent p.P2064P 0.34 TCGA-VQ-A8E3-01 16 1961980 1961980 C A HS3ST6 Missense_Mutation p.G183C 0.27 tolerated(0.08) possibly_damaging(0.545) TCGA-VQ-A8E3-01 16 21049299 21049299 G A DNAH3 Silent p.L1578L 0.24 TCGA-VQ-A8E3-01 16 2106736 2106736 T C TSC2 Missense_Mutation p.I247T 0.32 deleterious(0) benign(0.142) TCGA-VQ-A8E3-01 16 27840116 27840116 C T GSG1L Missense_Mutation p.R275Q 0.22 tolerated(0.46) benign(0.12) TCGA-VQ-A8E3-01 16 28838262 28838262 G - ATXN2L Frame_Shift_Del p.G234Vfs*33 0.34 TCGA-VQ-A8E3-01 16 31097313 31097313 C T PRSS53 Silent p.P285P 0.38 TCGA-VQ-A8E3-01 16 31105675 31105675 C - VKORC1 Intron 0.21 TCGA-VQ-A8E3-01 16 3165509 3165509 T C ZNF205 Missense_Mutation p.W71R 0.27 tolerated(0.97) benign(0) TCGA-VQ-A8E3-01 16 3340127 3340128 GA - ZNF263 Frame_Shift_Del p.R544Tfs*6 0.27 TCGA-VQ-A8E3-01 16 4242615 4242615 C G SRL Missense_Mutation p.V321L 0.27 deleterious(0.02) possibly_damaging(0.447) TCGA-VQ-A8E3-01 16 4312702 4312702 G A TFAP4 Silent p.S30S 0.11 TCGA-VQ-A8E3-01 16 4755246 4755246 C T ANKS3 Missense_Mutation p.E240K 0.25 tolerated(0.07) benign(0.23) TCGA-VQ-A8E3-01 16 4925277 4925277 A - UBN1 Frame_Shift_Del p.M958Cfs*7 0.19 TCGA-VQ-A8E3-01 16 50261813 50261813 C T PAPD5 Nonsense_Mutation p.R607* 0.29 TCGA-VQ-A8E3-01 16 56396196 56396196 A G AMFR 3'UTR 0.14 TCGA-VQ-A8E3-01 16 56443405 56443405 C T AMFR Nonsense_Mutation p.W148* 0.34 TCGA-VQ-A8E3-01 16 57416175 57416177 CTT - CX3CL1 In_Frame_Del p.S144del 0.32 TCGA-VQ-A8E3-01 16 57513415 57513415 G A DOK4 Missense_Mutation p.A2V 0.25 deleterious(0) possibly_damaging(0.665) TCGA-VQ-A8E3-01 16 57794999 57794999 C T KIFC3 Missense_Mutation p.V653M 0.31 deleterious(0) possibly_damaging(0.762) TCGA-VQ-A8E3-01 16 57918253 57918254 - G CNGB1 Frame_Shift_Ins p.E1191Rfs*102 0.26 TCGA-VQ-A8E3-01 16 57965654 57965654 G A CNGB1 Missense_Mutation p.L501F 0.23 deleterious(0.01) probably_damaging(0.979) TCGA-VQ-A8E3-01 16 67210787 67210787 C T KIAA0895L Missense_Mutation p.R448Q 0.23 tolerated(0.38) benign(0.009) TCGA-VQ-A8E3-01 16 67221736 67221736 C T EXOC3L1 Silent p.P144P 0.26 TCGA-VQ-A8E3-01 16 67298340 67298340 G A SLC9A5 Missense_Mutation p.R643Q 0.18 tolerated(0.07) benign(0.003) TCGA-VQ-A8E3-01 16 67409291 67409291 C A LRRC36 Missense_Mutation p.L546I 0.34 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8E3-01 16 72821285 72821285 A G ZFHX3 Silent p.P3630P 0.08 TCGA-VQ-A8E3-01 16 75269620 75269620 G A BCAR1 Missense_Mutation p.R439W 0.35 tolerated(0.06) possibly_damaging(0.677) TCGA-VQ-A8E3-01 16 843198 843198 C T CHTF18 Missense_Mutation p.R576C 0.40 deleterious(0.03) possibly_damaging(0.794) TCGA-VQ-A8E3-01 16 84514250 84514250 C T TLDC1 Missense_Mutation p.S381N 0.31 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8E3-01 16 84531709 84531709 C T TLDC1 5'UTR 0.39 TCGA-VQ-A8E3-01 16 87367659 87367659 C A FBXO31 Missense_Mutation p.E410D 0.42 tolerated(0.47) benign(0.092) TCGA-VQ-A8E3-01 16 87730240 87730240 A G JPH3 Missense_Mutation p.I741V 0.25 deleterious(0.01) possibly_damaging(0.634) TCGA-VQ-A8E3-01 16 88780094 88780094 C T CTU2 Missense_Mutation p.R305W 0.23 deleterious(0) probably_damaging(1) TCGA-VQ-A8E3-01 16 89180781 89180781 C A ACSF3 Missense_Mutation p.P338T 0.20 tolerated(0.06) probably_damaging(0.913) TCGA-VQ-A8E3-01 16 89614483 89614483 C T SPG7 Missense_Mutation p.T542I 0.25 tolerated(0.12) possibly_damaging(0.908) TCGA-VQ-A8E3-01 17 1028559 1028559 C - ABR Frame_Shift_Del p.D69Mfs*23 0.25 TCGA-VQ-A8E3-01 17 15492521 15492521 C T CDRT1 Missense_Mutation p.S676N 0.23 tolerated(0.36) benign(0.213) TCGA-VQ-A8E3-01 17 17106258 17106258 G A PLD6 Silent p.Y194Y 0.33 TCGA-VQ-A8E3-01 17 171198 171198 G A RPH3AL Missense_Mutation p.T29M 0.29 deleterious(0) probably_damaging(0.977) TCGA-VQ-A8E3-01 17 17696356 17696356 C T RAI1 Nonsense_Mutation p.Q32* 0.22 TCGA-VQ-A8E3-01 17 18022939 18022939 C T MYO15A Silent p.G275G 0.24 TCGA-VQ-A8E3-01 17 18030391 18030392 GA - MYO15A Frame_Shift_Del p.S1317Rfs*6 0.19 TCGA-VQ-A8E3-01 17 18148544 18148544 G A FLII Missense_Mutation p.R1240C 0.35 deleterious(0) probably_damaging(1) TCGA-VQ-A8E3-01 17 19091353 19091353 T C SNORD3A RNA 0.19 TCGA-VQ-A8E3-01 17 21202211 21202211 C T MAP2K3 Silent p.S46S 0.08 TCGA-VQ-A8E3-01 17 25628822 25628822 C T WSB1 Missense_Mutation p.R17C 0.07 deleterious_low_confidence(0) possibly_damaging(0.791) TCGA-VQ-A8E3-01 17 25633893 25633893 C T WSB1 Silent p.V232V 0.39 TCGA-VQ-A8E3-01 17 26943849 26943849 A G KIAA0100 Intron 0.39 TCGA-VQ-A8E3-01 17 29654693 29654693 G A NF1 Silent p.Q1815Q 0.51 TCGA-VQ-A8E3-01 17 33321296 33321296 C T LIG3 Missense_Mutation p.A486V 0.34 deleterious(0.01) probably_damaging(0.987) TCGA-VQ-A8E3-01 17 34945892 34945892 G A GGNBP2 3'UTR 0.42 TCGA-VQ-A8E3-01 17 3629216 3629216 A - GSG2 Frame_Shift_Del p.K664Nfs*20 0.09 TCGA-VQ-A8E3-01 17 3717640 3717640 C T C17orf85 Missense_Mutation p.A535T 0.37 deleterious_low_confidence(0.01) benign(0.017) TCGA-VQ-A8E3-01 17 38282534 38282535 AG - MSL1 Frame_Shift_Del p.E29Gfs*6 0.25 TCGA-VQ-A8E3-01 17 38922734 38922734 T C KRT26 3'UTR 0.29 TCGA-VQ-A8E3-01 17 39406436 39406436 G A KRTAP9-4 Silent p.%3D 0.28 TCGA-VQ-A8E3-01 17 39406442 39406442 G C KRTAP9-4 3'UTR 0.27 TCGA-VQ-A8E3-01 17 39406455 39406455 C T KRTAP9-4 3'UTR 0.30 TCGA-VQ-A8E3-01 17 39680070 39680072 CTC - KRT19 In_Frame_Del p.E376del 0.26 TCGA-VQ-A8E3-01 17 39775827 39775827 G A KRT17 3'UTR 0.22 TCGA-VQ-A8E3-01 17 39967156 39967156 T C LEPREL4 Missense_Mutation p.H249R 0.28 tolerated(0.58) benign(0.007) TCGA-VQ-A8E3-01 17 40375556 40375556 T C STAT5B Missense_Mutation p.S132G 0.21 tolerated(0.44) benign(0.004) TCGA-VQ-A8E3-01 17 40932876 40932876 C T WNK4 Missense_Mutation p.P54S 0.38 deleterious_low_confidence(0.01) unknown(0) TCGA-VQ-A8E3-01 17 43214117 43214117 A G ACBD4 Missense_Mutation p.T90A 0.29 tolerated(0.2) benign(0.032) TCGA-VQ-A8E3-01 17 43347914 43347914 G A MAP3K14-AS1 3'Flank 0.31 TCGA-VQ-A8E3-01 17 4442675 4442675 T C MYBBP1A Intron 0.30 TCGA-VQ-A8E3-01 17 48265276 48265276 G A COL1A1 Silent p.H1110H 0.25 TCGA-VQ-A8E3-01 17 48777241 48777241 A T ANKRD40 Missense_Mutation p.D99E 0.29 tolerated(1) benign(0) TCGA-VQ-A8E3-01 17 4908244 4908244 C T KIF1C Missense_Mutation p.R372W 0.30 deleterious(0) possibly_damaging(0.531) TCGA-VQ-A8E3-01 17 53345077 53345077 T - HLF Intron 0.41 TCGA-VQ-A8E3-01 17 56435778 56435779 - TC RNF43 Frame_Shift_Ins p.R454Nfs*49 0.35 TCGA-VQ-A8E3-01 17 61911887 61911887 G A SMARCD2 Missense_Mutation p.R290W 0.29 deleterious(0) possibly_damaging(0.849) TCGA-VQ-A8E3-01 17 63221128 63221128 G A RGS9 Silent p.Q472Q 0.34 TCGA-VQ-A8E3-01 17 65909212 65909212 C T BPTF Nonsense_Mutation p.R1738* 0.29 TCGA-VQ-A8E3-01 17 67151161 67151161 T - ABCA10 Frame_Shift_Del p.G1232Vfs*7 0.25 TCGA-VQ-A8E3-01 17 71334951 71334951 C A SDK2 Missense_Mutation p.Q2098H 0.31 tolerated(0.17) benign(0.015) TCGA-VQ-A8E3-01 17 72305506 72305506 C T DNAI2 Silent p.C442C 0.25 TCGA-VQ-A8E3-01 17 73096769 73096769 G A SLC16A5 Silent p.A337A 0.61 TCGA-VQ-A8E3-01 17 74396329 74396329 G A UBE2O Missense_Mutation p.R352C 0.26 tolerated(0.08) probably_damaging(0.993) TCGA-VQ-A8E3-01 17 75202400 75202400 T C SEC14L1 Missense_Mutation p.V420A 0.09 deleterious(0.02) possibly_damaging(0.848) TCGA-VQ-A8E3-01 17 7578493 7578493 C T TP53 Nonsense_Mutation p.W146* 0.74 TCGA-VQ-A8E3-01 17 78073441 78073441 G A CCDC40 Missense_Mutation p.R1099H 0.22 deleterious(0) possibly_damaging(0.48) TCGA-VQ-A8E3-01 17 79227020 79227020 C T SLC38A10 Missense_Mutation p.V437M 0.27 tolerated(0.2) benign(0.004) TCGA-VQ-A8E3-01 17 7983968 7983968 G T ALOX12B Intron 0.11 TCGA-VQ-A8E3-01 17 80280080 80280080 A G SECTM1 Missense_Mutation p.L235P 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.635) TCGA-VQ-A8E3-01 17 80789703 80789703 C T ZNF750 Missense_Mutation p.G210S 0.28 deleterious(0.03) benign(0.144) TCGA-VQ-A8E3-01 17 8398465 8398465 T C MYH10 Missense_Mutation p.Q1349R 0.05 probably_damaging(0.99) TCGA-VQ-A8E3-01 17 9676175 9676175 G A DHRS7C Silent p.Y213Y 0.20 TCGA-VQ-A8E3-01 18 11851771 11851771 G T CHMP1B Missense_Mutation p.K87N 0.16 tolerated(0.31) benign(0.007) TCGA-VQ-A8E3-01 18 12325489 12325489 G C TUBB6 Missense_Mutation p.S234T 0.47 deleterious_low_confidence(0.01) probably_damaging(0.918) TCGA-VQ-A8E3-01 18 13116476 13116476 C T CEP192 Nonsense_Mutation p.R2464* 0.35 TCGA-VQ-A8E3-01 18 13612766 13612766 A - LDLRAD4 Intron 0.18 TCGA-VQ-A8E3-01 18 21739439 21739439 T C CABYR Missense_Mutation p.M182T 0.07 tolerated(0.19) benign(0.029) TCGA-VQ-A8E3-01 18 22807228 22807228 G A ZNF521 Silent p.H218H 0.13 TCGA-VQ-A8E3-01 18 23667472 23667472 A G SS18 Missense_Mutation p.C47R 0.22 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8E3-01 18 28993638 28993638 C T DSG4 3'UTR 0.33 TCGA-VQ-A8E3-01 18 2913153 2913153 G T EMILIN2 Silent p.S971S 0.16 TCGA-VQ-A8E3-01 18 29709219 29709219 A G RNF138 3'UTR 0.42 TCGA-VQ-A8E3-01 18 29770095 29770095 T C MEP1B Missense_Mutation p.L21S 0.27 tolerated(0.06) benign(0.045) TCGA-VQ-A8E3-01 18 30092562 30092562 C T WBP11P1 RNA 0.14 TCGA-VQ-A8E3-01 18 3272912 3272912 G A MYL12B Missense_Mutation p.A6T 0.21 tolerated(0.23) benign(0.005) TCGA-VQ-A8E3-01 18 346424 346424 T C COLEC12 Missense_Mutation p.R400G 0.06 deleterious(0) possibly_damaging(0.879) TCGA-VQ-A8E3-01 18 43523145 43523145 C T EPG5 Missense_Mutation p.R642Q 0.12 deleterious(0) probably_damaging(0.947) TCGA-VQ-A8E3-01 18 5416215 5416215 C G EPB41L3 Missense_Mutation p.D557H 0.75 deleterious(0.05) possibly_damaging(0.738) TCGA-VQ-A8E3-01 18 61584738 61584739 - A SERPINB10 Frame_Shift_Ins p.R76Kfs*16 0.47 TCGA-VQ-A8E3-01 18 7037668 7037668 C T LAMA1 Missense_Mutation p.R549H 0.15 tolerated(0.51) benign(0.002) TCGA-VQ-A8E3-01 18 9117846 9117846 T C NDUFV2 Missense_Mutation p.V22A 0.12 tolerated(0.41) benign(0) TCGA-VQ-A8E3-01 18 9257029 9257031 CTC - ANKRD12 In_Frame_Del p.P1256del 0.21 TCGA-VQ-A8E3-01 19 10085064 10085064 C T COL5A3 Silent p.G1121G 0.13 TCGA-VQ-A8E3-01 19 10897276 10897276 C A DNM2 Missense_Mutation p.L296I 0.07 tolerated(0.2) possibly_damaging(0.778) TCGA-VQ-A8E3-01 19 11472148 11472148 C T DKFZP761J1410 Missense_Mutation p.A191V 0.21 deleterious(0) possibly_damaging(0.894) TCGA-VQ-A8E3-01 19 11531519 11531519 C T CCDC151 Missense_Mutation p.R591H 0.18 deleterious(0) unknown(0) TCGA-VQ-A8E3-01 19 1255500 1255500 C T MIDN Silent p.D312D 0.31 TCGA-VQ-A8E3-01 19 12740044 12740044 A - ZNF791 Frame_Shift_Del p.K569Nfs*3 0.23 TCGA-VQ-A8E3-01 19 12788179 12788180 - T DHPS Frame_Shift_Ins p.T237Nfs*25 0.52 TCGA-VQ-A8E3-01 19 12800783 12800783 C T FBXW9 Missense_Mutation p.R342H 0.35 deleterious(0) possibly_damaging(0.857) TCGA-VQ-A8E3-01 19 12920961 12920961 C T RNASEH2A Missense_Mutation p.T163M 0.52 deleterious(0) possibly_damaging(0.752) TCGA-VQ-A8E3-01 19 13216124 13216124 C T TRMT1 Missense_Mutation p.R597Q 0.17 tolerated(0.24) benign(0.005) TCGA-VQ-A8E3-01 19 13323232 13323232 G - CACNA1A Frame_Shift_Del p.P2052Lfs*70 0.42 TCGA-VQ-A8E3-01 19 14000599 14000599 G A C19orf57 Missense_Mutation p.A357V 0.26 deleterious(0.01) possibly_damaging(0.866) TCGA-VQ-A8E3-01 19 14518910 14518910 A G CD97 Missense_Mutation p.R829G 0.22 deleterious(0) possibly_damaging(0.839) TCGA-VQ-A8E3-01 19 15133841 15133841 G A CCDC105 Silent p.P470P 0.19 TCGA-VQ-A8E3-01 19 15276747 15276747 C T NOTCH3 Missense_Mutation p.E1840K 0.21 deleterious(0.03) probably_damaging(1) TCGA-VQ-A8E3-01 19 15376449 15376449 C T BRD4 Missense_Mutation p.A189T 0.21 unknown(0) TCGA-VQ-A8E3-01 19 1556477 1556477 G A MEX3D Silent p.D347D 0.32 TCGA-VQ-A8E3-01 19 1584657 1584657 G A MBD3 Missense_Mutation p.T97M 0.29 tolerated(0.19) probably_damaging(0.947) TCGA-VQ-A8E3-01 19 16301732 16301732 A G FAM32A Missense_Mutation p.H102R 0.09 deleterious(0) benign(0.012) TCGA-VQ-A8E3-01 19 17627038 17627038 C T PGLS Silent p.P115P 0.21 TCGA-VQ-A8E3-01 19 17671225 17671225 G A COLGALT1 Missense_Mutation p.R147H 0.24 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8E3-01 19 17988837 17988837 G A SLC5A5 Missense_Mutation p.V302I 0.25 tolerated(0.47) benign(0.08) TCGA-VQ-A8E3-01 19 18305866 18305866 G T MPV17L2 Missense_Mutation p.W178C 0.18 deleterious(0) probably_damaging(1) TCGA-VQ-A8E3-01 19 19033423 19033423 G A DDX49 Missense_Mutation p.V216M 0.25 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8E3-01 19 1997375 1997375 G A BTBD2 Silent p.D165D 0.25 TCGA-VQ-A8E3-01 19 2109944 2109944 G A AP3D1 Missense_Mutation p.A1093V 0.11 tolerated(0.28) possibly_damaging(0.873) TCGA-VQ-A8E3-01 19 2247793 2247793 G T SF3A2 Nonsense_Mutation p.E215* 0.20 TCGA-VQ-A8E3-01 19 22817139 22817139 G A ZNF492 5'UTR 0.17 TCGA-VQ-A8E3-01 19 22940791 22940791 C G ZNF99 Missense_Mutation p.E640D 0.43 deleterious(0.03) benign(0.431) TCGA-VQ-A8E3-01 19 3192609 3192609 T G NCLN Missense_Mutation p.V109G 0.42 deleterious(0) possibly_damaging(0.474) TCGA-VQ-A8E3-01 19 3534501 3534501 G A FZR1 Missense_Mutation p.R477H 0.16 tolerated(0.09) benign(0.066) TCGA-VQ-A8E3-01 19 3661039 3661039 G A PIP5K1C Silent p.F131F 0.22 TCGA-VQ-A8E3-01 19 3728384 3728384 G A TJP3 Intron 0.20 TCGA-VQ-A8E3-01 19 37406154 37406154 C A ZNF829 Splice_Site p.X54_splice 0.27 TCGA-VQ-A8E3-01 19 37677708 37677708 C A ZNF585B Missense_Mutation p.C244F 0.51 deleterious(0.01) probably_damaging(0.929) TCGA-VQ-A8E3-01 19 38103175 38103175 T C ZNF540 Missense_Mutation p.C332R 0.27 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8E3-01 19 38706885 38706885 C T DPF1 Missense_Mutation p.D292N 0.14 tolerated(0.15) probably_damaging(0.918) TCGA-VQ-A8E3-01 19 38882704 38882704 C G SPRED3 Missense_Mutation p.A99G 0.33 deleterious(0) probably_damaging(0.989) TCGA-VQ-A8E3-01 19 39058541 39058541 A G RYR1 Missense_Mutation p.Q4548R 0.31 unknown(0) TCGA-VQ-A8E3-01 19 3980625 3980625 G A EEF2 Silent p.Y411Y 0.29 TCGA-VQ-A8E3-01 19 39880905 39880905 A G PAF1 Silent p.P24P 0.29 TCGA-VQ-A8E3-01 19 40424437 40424437 T C FCGBP Missense_Mutation p.Y589C 0.18 probably_damaging(1) TCGA-VQ-A8E3-01 19 41306791 41306791 A G EGLN2 Missense_Mutation p.Q105R 0.29 deleterious_low_confidence(0) benign(0.067) TCGA-VQ-A8E3-01 19 41448071 41448071 C T AC092071.1 5'Flank 0.21 TCGA-VQ-A8E3-01 19 41703747 41703747 G A CYP2S1 Missense_Mutation p.R136Q 0.21 deleterious(0.01) benign(0.387) TCGA-VQ-A8E3-01 19 42225020 42225020 C T CEACAM5 Silent p.N650N 0.35 TCGA-VQ-A8E3-01 19 42791282 42791282 G - CIC Frame_Shift_Del p.V116Wfs*89 0.30 TCGA-VQ-A8E3-01 19 44174242 44174242 G A PLAUR Silent p.L11L 0.29 TCGA-VQ-A8E3-01 19 44222989 44222989 G A IRGC Silent p.T93T 0.25 TCGA-VQ-A8E3-01 19 44947102 44947102 C T ZNF229 5'UTR 0.65 TCGA-VQ-A8E3-01 19 4537923 4537923 C - LRG1 3'UTR 0.38 TCGA-VQ-A8E3-01 19 45912516 45912516 A G CD3EAP Silent p.R430R 0.25 TCGA-VQ-A8E3-01 19 46216162 46216162 G A FBXO46 Missense_Mutation p.P198S 0.40 tolerated(0.25) probably_damaging(0.986) TCGA-VQ-A8E3-01 19 46287477 46287478 - G DMWD 3'UTR 0.26 TCGA-VQ-A8E3-01 19 46915274 46915274 C A CCDC8 Missense_Mutation p.W265L 0.28 probably_damaging(0.999) TCGA-VQ-A8E3-01 19 47995311 47995311 C T NAPA Silent p.A209A 0.32 TCGA-VQ-A8E3-01 19 4816465 4816465 G - TICAM1 Frame_Shift_Del p.P642Hfs*50 0.29 TCGA-VQ-A8E3-01 19 50958428 50958428 T C MYBPC2 Missense_Mutation p.F693S 0.36 tolerated(0.1) possibly_damaging(0.906) TCGA-VQ-A8E3-01 19 51581280 51581280 G A KLK14 Missense_Mutation p.T263M 0.29 deleterious(0) probably_damaging(0.98) TCGA-VQ-A8E3-01 19 53086002 53086002 A - ZNF701 Frame_Shift_Del p.K298Nfs*4 0.23 TCGA-VQ-A8E3-01 19 54600196 54600196 G A OSCAR Missense_Mutation p.P113L 0.36 tolerated(0.4) benign(0.024) TCGA-VQ-A8E3-01 19 54611751 54611751 T C NDUFA3 3'Flank 0.44 TCGA-VQ-A8E3-01 19 56164127 56164127 C T CCDC106 3'UTR 0.29 TCGA-VQ-A8E3-01 19 56244756 56244756 A C NLRP9 Silent p.T147T 0.17 TCGA-VQ-A8E3-01 19 5679654 5679654 G - C19orf70 Frame_Shift_Del p.A51Pfs*39 0.23 TCGA-VQ-A8E3-01 19 56935508 56935508 G A ZNF583 Missense_Mutation p.C494Y 0.25 deleterious(0) probably_damaging(1) TCGA-VQ-A8E3-01 19 57327913 57327914 CA - PEG3 Frame_Shift_Del p.C632Wfs*7 0.17 TCGA-VQ-A8E3-01 19 57328797 57328797 G A PEG3 Missense_Mutation p.S338L 0.23 tolerated(0.31) benign(0.002) TCGA-VQ-A8E3-01 19 579629 579629 C T BSG Missense_Mutation p.A182V 0.17 tolerated(0.21) benign(0.029) TCGA-VQ-A8E3-01 19 630094 630094 G A POLRMT Missense_Mutation p.R90W 0.27 deleterious(0) possibly_damaging(0.724) TCGA-VQ-A8E3-01 19 7682765 7682765 G A CAMSAP3 Missense_Mutation p.R1218Q 0.19 deleterious(0.01) benign(0.236) TCGA-VQ-A8E3-01 19 805052 805052 C T PTBP1 Silent p.L253L 0.23 TCGA-VQ-A8E3-01 19 9089103 9089103 C T MUC16 Nonsense_Mutation p.W904* 0.49 TCGA-VQ-A8E3-01 19 9362217 9362217 T - OR7E24 Frame_Shift_Del p.F168Lfs*12 0.19 TCGA-VQ-A8E3-01 1 100843164 100843164 A G CDC14A Missense_Mutation p.N68S 0.31 deleterious(0.02) benign(0.206) TCGA-VQ-A8E3-01 1 100963751 100963751 C T CDC14A Missense_Mutation p.A470V 0.25 tolerated(0.09) benign(0.003) TCGA-VQ-A8E3-01 1 104297223 104297223 A T AMY1C Silent p.I327I 0.02 TCGA-VQ-A8E3-01 1 108735316 108735316 A G SLC25A24 Intron 0.27 TCGA-VQ-A8E3-01 1 110591818 110591818 G C STRIP1 Silent p.L582L 0.32 TCGA-VQ-A8E3-01 1 110594381 110594381 T C STRIP1 Missense_Mutation p.V713A 0.34 tolerated(0.07) benign(0.055) TCGA-VQ-A8E3-01 1 112524842 112524842 C T KCND3 Missense_Mutation p.M169I 0.21 tolerated(0.19) benign(0) TCGA-VQ-A8E3-01 1 114429187 114429187 T - BCL2L15 Frame_Shift_Del p.N74Tfs*33 0.16 TCGA-VQ-A8E3-01 1 151018615 151018615 A G BNIPL Silent p.Q337Q 0.16 TCGA-VQ-A8E3-01 1 151773371 151773371 G A LINGO4 3'UTR 0.34 TCGA-VQ-A8E3-01 1 152127448 152127448 C A RPTN Missense_Mutation p.Q709H 0.16 tolerated(0.15) benign(0.066) TCGA-VQ-A8E3-01 1 152277448 152277448 C T FLG Missense_Mutation p.R3305H 0.21 unknown(0) TCGA-VQ-A8E3-01 1 152552041 152552041 T C LCE3D 3'UTR 0.17 TCGA-VQ-A8E3-01 1 153512572 153512572 C A S100A5 Missense_Mutation p.K32N 0.18 tolerated(0.16) benign(0.063) TCGA-VQ-A8E3-01 1 153927570 153927570 G A CRTC2 Nonsense_Mutation p.Q76* 0.28 TCGA-VQ-A8E3-01 1 154224082 154224082 C T UBAP2L Silent p.S539S 0.17 TCGA-VQ-A8E3-01 1 154557430 154557430 A G ADAR Missense_Mutation p.L1178P 0.20 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8E3-01 1 155265012 155265012 C T PKLR Missense_Mutation p.A197T 0.24 tolerated(0.47) benign(0.016) TCGA-VQ-A8E3-01 1 156046390 156046390 G A MEX3A Missense_Mutation p.T513M 0.33 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8E3-01 1 156126247 156126247 T A SEMA4A Missense_Mutation p.L61H 0.23 deleterious(0) probably_damaging(0.976) TCGA-VQ-A8E3-01 1 156261410 156261410 G T TMEM79 3'UTR 0.30 TCGA-VQ-A8E3-01 1 156532946 156532946 C T IQGAP3 Missense_Mutation p.A260T 0.09 tolerated(0.13) benign(0.005) TCGA-VQ-A8E3-01 1 156628448 156628448 C T BCAN Missense_Mutation p.R851C 0.14 deleterious(0) probably_damaging(1) TCGA-VQ-A8E3-01 1 156640224 156640224 C A NES Missense_Mutation p.R1252S 0.18 deleterious(0.04) benign(0.063) TCGA-VQ-A8E3-01 1 157545298 157545298 G A FCRL4 3'UTR 0.19 TCGA-VQ-A8E3-01 1 158984717 158984717 A - IFI16 Frame_Shift_Del p.E85Kfs*3 0.19 TCGA-VQ-A8E3-01 1 15987420 15987420 A G RSC1A1 Missense_Mutation p.T353A 0.31 deleterious(0) benign(0.167) TCGA-VQ-A8E3-01 1 160267163 160267163 G A COPA Missense_Mutation p.R754C 0.20 deleterious(0.01) benign(0.402) TCGA-VQ-A8E3-01 1 160326900 160326900 C T NCSTN Missense_Mutation p.R622C 0.16 deleterious(0) probably_damaging(0.915) TCGA-VQ-A8E3-01 1 160793968 160793968 C T LY9 Intron 0.16 TCGA-VQ-A8E3-01 1 161495252 161495252 C A HSPA6 Silent p.A268A 0.11 TCGA-VQ-A8E3-01 1 16255783 16255783 A - SPEN Frame_Shift_Del p.K1018Sfs*13 0.26 TCGA-VQ-A8E3-01 1 163317587 163317587 A G NUF2 Missense_Mutation p.E328G 0.28 deleterious(0.01) benign(0.05) TCGA-VQ-A8E3-01 1 16375733 16375733 C T CLCNKB Silent p.S258S 0.23 TCGA-VQ-A8E3-01 1 165513632 165513632 A C LRRC52 Missense_Mutation p.Q33H 0.18 deleterious(0.02) probably_damaging(0.934) TCGA-VQ-A8E3-01 1 167408615 167408615 G T CD247 Missense_Mutation p.P62H 0.27 deleterious(0.01) possibly_damaging(0.717) TCGA-VQ-A8E3-01 1 169489787 169489787 C T F5 Missense_Mutation p.R2055Q 0.18 deleterious(0) probably_damaging(1) TCGA-VQ-A8E3-01 1 173517582 173517583 - A SLC9C2 Frame_Shift_Ins p.L469Ffs*5 0.16 TCGA-VQ-A8E3-01 1 17420092 17420092 A C PADI2 Missense_Mutation p.C167G 0.21 tolerated(0.35) benign(0.003) TCGA-VQ-A8E3-01 1 176740182 176740183 - C PAPPA2 Frame_Shift_Ins p.I1530Yfs*26 0.19 TCGA-VQ-A8E3-01 1 176934298 176934298 C T ASTN1 Splice_Site p.X533_splice 0.21 TCGA-VQ-A8E3-01 1 181724373 181724373 G A CACNA1E Missense_Mutation p.A1277T 0.35 deleterious(0) benign(0.355) TCGA-VQ-A8E3-01 1 183208584 183208584 T C LAMC2 Silent p.D985D 0.29 TCGA-VQ-A8E3-01 1 19474582 19474582 G A UBR4 Silent p.L2512L 0.50 TCGA-VQ-A8E3-01 1 19611554 19611554 T G AKR7A3 Silent p.R188R 0.34 TCGA-VQ-A8E3-01 1 196883792 196883792 A G CFHR4 Missense_Mutation p.T449A 0.16 tolerated(0.56) benign(0.025) TCGA-VQ-A8E3-01 1 200822404 200822404 C T CAMSAP2 Missense_Mutation p.R1202C 0.55 tolerated(0.18) possibly_damaging(0.84) TCGA-VQ-A8E3-01 1 201039515 201039515 C A CACNA1S Nonsense_Mutation p.E749* 0.18 TCGA-VQ-A8E3-01 1 202092299 202092299 C T GPR37L1 Missense_Mutation p.P70S 0.59 tolerated(0.18) benign(0.047) TCGA-VQ-A8E3-01 1 204172089 204172089 C T GOLT1A Missense_Mutation p.G18S 0.30 deleterious(0) probably_damaging(1) TCGA-VQ-A8E3-01 1 206224736 206224736 G A AVPR1B Missense_Mutation p.R99H 0.56 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8E3-01 1 207867894 207867894 A G CR1L Silent p.P220P 0.07 TCGA-VQ-A8E3-01 1 209799281 209799281 C T LAMB3 Missense_Mutation p.R563H 0.56 deleterious(0.04) probably_damaging(0.945) TCGA-VQ-A8E3-01 1 21553721 21553721 T C ECE1 Splice_Site p.X594_splice 0.28 TCGA-VQ-A8E3-01 1 223285784 223285784 G A TLR5 Missense_Mutation p.T197M 0.30 tolerated(0.22) benign(0.014) TCGA-VQ-A8E3-01 1 22331945 22331945 C T CELA3A Silent p.S45S 0.13 TCGA-VQ-A8E3-01 1 236700878 236700878 G A LGALS8 Missense_Mutation p.A43T 0.58 deleterious(0) benign(0.435) TCGA-VQ-A8E3-01 1 237947096 237947096 G A RYR2 Silent p.S4028S 0.73 TCGA-VQ-A8E3-01 1 240072503 240072503 C T CHRM3 Silent p.R584R 0.51 TCGA-VQ-A8E3-01 1 27101278 27101278 C - ARID1A Frame_Shift_Del p.A1522Pfs*5 0.21 TCGA-VQ-A8E3-01 1 27105930 27105931 - G ARID1A Frame_Shift_Ins p.D1850Gfs*4 0.30 TCGA-VQ-A8E3-01 1 29652209 29652209 G A PTPRU 3'Flank 0.32 TCGA-VQ-A8E3-01 1 32742306 32742306 C T LCK Silent p.L295L 0.33 TCGA-VQ-A8E3-01 1 34554781 34554781 C T CSMD2 Silent p.T27T 0.24 TCGA-VQ-A8E3-01 1 34667690 34667690 G A C1orf94 Missense_Mutation p.A426T 0.28 tolerated(0.13) benign(0.016) TCGA-VQ-A8E3-01 1 35944769 35944769 C T KIAA0319L Silent p.L237L 0.30 TCGA-VQ-A8E3-01 1 36225997 36225997 G A CLSPN Missense_Mutation p.R509W 0.38 deleterious(0) benign(0.263) TCGA-VQ-A8E3-01 1 36306817 36306817 C - AGO4 Frame_Shift_Del p.P594Qfs*51 0.27 TCGA-VQ-A8E3-01 1 38185644 38185644 G A EPHA10 Silent p.G833G 0.31 TCGA-VQ-A8E3-01 1 38226898 38226898 C T EPHA10 Intron 0.41 TCGA-VQ-A8E3-01 1 40363231 40363231 G A MYCL Missense_Mutation p.A333V 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A8E3-01 1 42896290 42896290 G A ZMYND12 3'UTR 0.33 TCGA-VQ-A8E3-01 1 43748730 43748730 C T C1orf210 Missense_Mutation p.G23D 0.24 tolerated(0.41) possibly_damaging(0.545) TCGA-VQ-A8E3-01 1 43830228 43830228 C - ELOVL1 Frame_Shift_Del p.V156* 0.16 TCGA-VQ-A8E3-01 1 44422355 44422355 C A IPO13 Silent p.T362T 0.28 TCGA-VQ-A8E3-01 1 47080731 47080731 G A MOB3C Silent p.L6L 0.22 TCGA-VQ-A8E3-01 1 51005322 51005322 C T FAF1 Silent p.P449P 0.09 TCGA-VQ-A8E3-01 1 6272445 6272445 C G RNF207 Missense_Mutation p.S484C 0.36 tolerated(0.07) benign(0.021) TCGA-VQ-A8E3-01 1 67391867 67391867 G A MIER1 Missense_Mutation p.R37Q 0.32 tolerated_low_confidence(0.18) possibly_damaging(0.885) TCGA-VQ-A8E3-01 1 67890001 67890001 A G SERBP1 Missense_Mutation p.S234P 0.22 tolerated_low_confidence(0.23) benign(0.053) TCGA-VQ-A8E3-01 1 68564481 68564481 A - WLS Intron 0.17 TCGA-VQ-A8E3-01 1 70452018 70452018 G A LRRC7 Missense_Mutation p.E256K 0.22 tolerated(0.06) benign(0.189) TCGA-VQ-A8E3-01 1 8418868 8418868 G A RERE Missense_Mutation p.P1243S 0.29 unknown(0) TCGA-VQ-A8E3-01 1 84700957 84700957 A - PRKACB Frame_Shift_Del p.K390Nfs*17 0.21 TCGA-VQ-A8E3-01 1 87041141 87041141 G A CLCA4 Missense_Mutation p.V604I 0.21 deleterious(0.03) benign(0.002) TCGA-VQ-A8E3-01 1 91405128 91405128 T C ZNF644 Missense_Mutation p.T595A 0.30 tolerated(0.25) benign(0.13) TCGA-VQ-A8E3-01 20 1285982 1285982 G A SNPH Missense_Mutation p.A257T 0.10 tolerated(0.12) benign(0.065) TCGA-VQ-A8E3-01 20 20350229 20350229 T C INSM1 Missense_Mutation p.C440R 0.16 deleterious(0) possibly_damaging(0.712) TCGA-VQ-A8E3-01 20 21346245 21346246 - A XRN2 Frame_Shift_Ins p.S789Ifs*14 0.17 TCGA-VQ-A8E3-01 20 21492734 21492734 C T NKX2-2 Missense_Mutation p.A217T 0.35 tolerated(1) benign(0) TCGA-VQ-A8E3-01 20 25481601 25481601 C T NINL Missense_Mutation p.V303M 0.15 deleterious(0.02) benign(0.372) TCGA-VQ-A8E3-01 20 259870 259870 C T C20orf96 Missense_Mutation p.M136I 0.37 tolerated(0.29) benign(0.002) TCGA-VQ-A8E3-01 20 2637429 2637429 C T NOP56 Missense_Mutation p.T390M 0.13 deleterious(0) possibly_damaging(0.455) TCGA-VQ-A8E3-01 20 2639167 2639167 A G IDH3B 3'UTR 0.45 TCGA-VQ-A8E3-01 20 2945518 2945518 G A PTPRA Missense_Mutation p.V29I 0.37 tolerated_low_confidence(0.19) benign(0) TCGA-VQ-A8E3-01 20 3053010 3053010 C T OXT Silent p.D108D 0.09 TCGA-VQ-A8E3-01 20 3240606 3240606 C T C20orf194 Missense_Mutation p.R981H 0.21 deleterious(0.02) probably_damaging(0.941) TCGA-VQ-A8E3-01 20 34092646 34092646 G A CEP250 Missense_Mutation p.R2150Q 0.17 benign(0.001) TCGA-VQ-A8E3-01 20 36022370 36022370 G A SRC Silent p.A141A 0.19 TCGA-VQ-A8E3-01 20 3654091 3654091 C T ADAM33 Missense_Mutation p.G348D 0.33 deleterious(0) probably_damaging(1) TCGA-VQ-A8E3-01 20 3684491 3684491 G - SIGLEC1 Frame_Shift_Del p.I319Sfs*12 0.12 TCGA-VQ-A8E3-01 20 40049847 40049847 A C CHD6 Missense_Mutation p.L1810V 0.24 tolerated_low_confidence(0.12) benign(0.003) TCGA-VQ-A8E3-01 20 40085990 40085990 G A CHD6 Missense_Mutation p.R915C 0.18 deleterious(0) probably_damaging(1) TCGA-VQ-A8E3-01 20 43743709 43743709 G T WFDC5 Missense_Mutation p.L6I 0.22 tolerated(0.11) unknown(0) TCGA-VQ-A8E3-01 20 43926950 43926950 C T MATN4 Missense_Mutation p.R429Q 0.30 possibly_damaging(0.473) TCGA-VQ-A8E3-01 20 44672297 44672298 - G SLC12A5 Frame_Shift_Ins p.D446Gfs*36 0.10 TCGA-VQ-A8E3-01 20 4843522 4843522 G A SLC23A2 Missense_Mutation p.A463V 0.11 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8E3-01 20 49366649 49366649 C T PARD6B Missense_Mutation p.P248L 0.19 deleterious(0) probably_damaging(1) TCGA-VQ-A8E3-01 20 50241825 50241825 A T ATP9A Missense_Mutation p.M641K 0.27 tolerated(0.2) benign(0.001) TCGA-VQ-A8E3-01 20 60508134 60508134 C T CDH4 Silent p.R777R 0.14 TCGA-VQ-A8E3-01 20 61468608 61468608 G A COL9A3 Missense_Mutation p.G593R 0.14 deleterious(0) probably_damaging(1) TCGA-VQ-A8E3-01 20 61512472 61512472 T - DIDO1 Frame_Shift_Del p.E1613Sfs*251 0.31 TCGA-VQ-A8E3-01 20 61522306 61522306 G A DIDO1 Intron 0.18 TCGA-VQ-A8E3-01 20 62701435 62701435 T C TCEA2 Intron 0.31 TCGA-VQ-A8E3-01 20 9319665 9319665 A - PLCB4 Frame_Shift_Del p.N118Ifs*4 0.09 TCGA-VQ-A8E3-01 21 19638268 19638268 C - CHODL Intron 0.24 TCGA-VQ-A8E3-01 21 27425641 27425641 G T APP Missense_Mutation p.L127I 0.28 deleterious(0) unknown(0) TCGA-VQ-A8E3-01 21 30400198 30400198 T C USP16 5'UTR 0.45 TCGA-VQ-A8E3-01 21 30426182 30426182 T C USP16 Silent p.S751S 0.31 TCGA-VQ-A8E3-01 21 33684092 33684092 G A MRAP Missense_Mutation p.A102T 0.38 deleterious(0.01) benign(0.023) TCGA-VQ-A8E3-01 21 34927497 34927497 C - SON Frame_Shift_Del p.P1988Lfs*18 0.09 TCGA-VQ-A8E3-01 21 37572658 37572658 C T DOPEY2 Missense_Mutation p.A117V 0.22 deleterious(0) probably_damaging(0.983) TCGA-VQ-A8E3-01 21 43983939 43983939 A - SLC37A1 Frame_Shift_Del p.K364Rfs*22 0.17 TCGA-VQ-A8E3-01 21 45710773 45710773 G - AIRE Intron 0.26 TCGA-VQ-A8E3-01 21 46932122 46932122 A G COL18A1 Missense_Mutation p.H1457R 0.32 probably_damaging(0.996) TCGA-VQ-A8E3-01 21 47552161 47552161 G A COL6A2 Missense_Mutation p.A919T 0.27 tolerated(0.49) benign(0.003) TCGA-VQ-A8E3-01 21 47635632 47635632 T C LSS Missense_Mutation p.T287A 0.35 tolerated(0.52) benign(0.431) TCGA-VQ-A8E3-01 22 17288659 17288660 - A XKR3 Frame_Shift_Ins p.W102Lfs*17 0.28 TCGA-VQ-A8E3-01 22 17590501 17590501 T C IL17RA Missense_Mutation p.S798P 0.42 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8E3-01 22 19808206 19808206 G A GNB1L Missense_Mutation p.R57W 0.20 deleterious(0) probably_damaging(0.972) TCGA-VQ-A8E3-01 22 22313518 22313518 T C TOP3B Missense_Mutation p.M631V 0.08 deleterious(0) possibly_damaging(0.802) TCGA-VQ-A8E3-01 22 23165515 23165515 C T IGLV2-8 Missense_Mutation p.A29V 0.26 tolerated_low_confidence(1) benign(0.001) TCGA-VQ-A8E3-01 22 24313758 24313758 C A DDT Silent p.T113T 0.33 TCGA-VQ-A8E3-01 22 28193466 28193466 C T MN1 Silent p.P1022P 0.19 TCGA-VQ-A8E3-01 22 28195029 28195029 A G MN1 Silent p.P501P 0.19 TCGA-VQ-A8E3-01 22 30079078 30079078 A G NF2 Intron 0.54 TCGA-VQ-A8E3-01 22 32587165 32587165 T C RFPL2 Missense_Mutation p.E244G 0.26 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8E3-01 22 35463152 35463152 G A ISX Silent p.P24P 0.21 TCGA-VQ-A8E3-01 22 37491589 37491589 A G TMPRSS6 Splice_Site p.X220_splice 0.31 TCGA-VQ-A8E3-01 22 37914016 37914016 G A CARD10 Missense_Mutation p.T112M 0.28 deleterious(0) probably_damaging(1) TCGA-VQ-A8E3-01 22 38227982 38227982 T C ANKRD54 Missense_Mutation p.S291G 0.27 deleterious(0.01) possibly_damaging(0.771) TCGA-VQ-A8E3-01 22 38891890 38891890 G A DDX17 Missense_Mutation p.A264V 0.20 tolerated(0.06) probably_damaging(0.973) TCGA-VQ-A8E3-01 22 39262955 39262955 C T CBX6 Silent p.P166P 0.25 TCGA-VQ-A8E3-01 22 40037069 40037069 G A CACNA1I Missense_Mutation p.S313N 0.38 tolerated(0.36) benign(0.225) TCGA-VQ-A8E3-01 22 42032734 42032734 C T XRCC6 Silent p.A183A 0.56 TCGA-VQ-A8E3-01 22 42564716 42564716 G - TCF20 Frame_Shift_Del p.L1943Cfs*118 0.33 TCGA-VQ-A8E3-01 22 45740312 45740312 C G SMC1B 3'UTR 0.35 TCGA-VQ-A8E3-01 22 46614297 46614297 C T PPARA Silent p.N169N 0.28 TCGA-VQ-A8E3-01 22 46930220 46930220 T C CELSR1 Missense_Mutation p.I950V 0.33 tolerated(0.76) benign(0.371) TCGA-VQ-A8E3-01 22 50167924 50167924 C T BRD1 Missense_Mutation p.R1045H 0.24 tolerated(0.17) possibly_damaging(0.792) TCGA-VQ-A8E3-01 22 50664338 50664338 C T TUBGCP6 Missense_Mutation p.R623Q 0.28 tolerated(0.05) probably_damaging(0.968) TCGA-VQ-A8E3-01 2 100170875 100170875 G A AFF3 Missense_Mutation p.R1178C 0.23 deleterious(0) probably_damaging(0.981) TCGA-VQ-A8E3-01 2 102636202 102636202 C T IL1R2 Missense_Mutation p.R206C 0.21 deleterious(0.02) probably_damaging(0.963) TCGA-VQ-A8E3-01 2 103095317 103095317 G C SLC9A4 Missense_Mutation p.R92S 0.28 tolerated(0.08) possibly_damaging(0.582) TCGA-VQ-A8E3-01 2 109345623 109345623 T C RANBP2 Silent p.Y36Y 0.11 TCGA-VQ-A8E3-01 2 109490014 109490014 A G CCDC138 Missense_Mutation p.S601G 0.32 deleterious(0.02) benign(0.294) TCGA-VQ-A8E3-01 2 112542971 112542971 G A ANAPC1 Missense_Mutation p.T1628M 0.19 tolerated(0.1) benign(0.002) TCGA-VQ-A8E3-01 2 120219465 120219467 AGA - SCTR In_Frame_Del p.F249del 0.30 TCGA-VQ-A8E3-01 2 120836150 120836150 T - EPB41L5 Frame_Shift_Del p.W268Gfs*4 0.26 TCGA-VQ-A8E3-01 2 127806031 127806031 A - BIN1 3'UTR 0.50 TCGA-VQ-A8E3-01 2 128354041 128354041 A G MYO7B Missense_Mutation p.H750R 0.19 tolerated(0.1) benign(0.013) TCGA-VQ-A8E3-01 2 137814773 137814773 G A THSD7B Missense_Mutation p.R308K 0.21 deleterious(0.04) probably_damaging(0.91) TCGA-VQ-A8E3-01 2 137990482 137990483 - C THSD7B Frame_Shift_Ins p.S646* 0.11 TCGA-VQ-A8E3-01 2 141201967 141201967 C T LRP1B Missense_Mutation p.C3409Y 0.32 possibly_damaging(0.712) TCGA-VQ-A8E3-01 2 152383993 152383993 A G NEB Splice_Site p.X7280_splice 0.46 TCGA-VQ-A8E3-01 2 158115391 158115391 A T GALNT5 Missense_Mutation p.N266I 0.30 tolerated(0.05) benign(0.017) TCGA-VQ-A8E3-01 2 172334538 172334538 A - DCAF17 Frame_Shift_Del p.S411Vfs*23 0.28 TCGA-VQ-A8E3-01 2 17699326 17699326 G - RAD51AP2 Frame_Shift_Del p.S120Hfs*8 0.31 TCGA-VQ-A8E3-01 2 179430640 179430641 - T TTN Frame_Shift_Ins p.T26740Nfs*4 0.18 TCGA-VQ-A8E3-01 2 179497719 179497719 C T TTN Missense_Mutation p.C14380Y 0.26 TCGA-VQ-A8E3-01 2 179516427 179516427 G A TTN Silent p.V13143V 0.29 TCGA-VQ-A8E3-01 2 179638250 179638250 G A TTN Silent p.D2511D 0.31 TCGA-VQ-A8E3-01 2 179639700 179639700 A G TTN Silent p.C2246C 0.26 TCGA-VQ-A8E3-01 2 179720989 179720989 T - CCDC141 Frame_Shift_Del p.M954Cfs*4 0.27 TCGA-VQ-A8E3-01 2 182322430 182322430 C T ITGA4 Missense_Mutation p.R17W 0.50 tolerated(0.06) benign(0) TCGA-VQ-A8E3-01 2 196545177 196545177 A G SLC39A10 Silent p.S137S 0.30 TCGA-VQ-A8E3-01 2 197791353 197791353 A G PGAP1 5'UTR 0.40 TCGA-VQ-A8E3-01 2 202580468 202580468 G A ALS2 Nonsense_Mutation p.Q1311* 0.28 TCGA-VQ-A8E3-01 2 202632073 202632073 G A ALS2 Silent p.G18G 0.30 TCGA-VQ-A8E3-01 2 21231293 21231293 T G APOB Missense_Mutation p.N2816T 0.18 benign(0) TCGA-VQ-A8E3-01 2 219251456 219251456 A G SLC11A1 Silent p.S164S 0.22 TCGA-VQ-A8E3-01 2 219856887 219856887 G T CRYBA2 Silent p.A80A 0.23 TCGA-VQ-A8E3-01 2 232393279 232393279 G A NMUR1 Silent p.N151N 0.34 TCGA-VQ-A8E3-01 2 233323594 233323594 C T ALPI Missense_Mutation p.A442V 0.24 deleterious(0) possibly_damaging(0.708) TCGA-VQ-A8E3-01 2 233350821 233350821 G T ECEL1 Silent p.R181R 0.27 TCGA-VQ-A8E3-01 2 233712247 233712247 C T GIGYF2 Missense_Mutation p.P1238L 0.34 unknown(0) TCGA-VQ-A8E3-01 2 235405225 235405225 G A ARL4C Silent p.G2G 0.24 TCGA-VQ-A8E3-01 2 241683382 241683382 C T KIF1A Silent p.P1187P 0.31 TCGA-VQ-A8E3-01 2 242065899 242065899 G A PASK Nonsense_Mutation p.R811* 0.24 TCGA-VQ-A8E3-01 2 24244608 24244608 G T MFSD2B Missense_Mutation p.D258Y 0.14 deleterious(0) probably_damaging(0.971) TCGA-VQ-A8E3-01 2 27325429 27325429 C T CGREF1 Silent p.L37L 0.31 TCGA-VQ-A8E3-01 2 27356444 27356444 C T PREB Missense_Mutation p.R94H 0.45 deleterious(0.02) possibly_damaging(0.721) TCGA-VQ-A8E3-01 2 27423892 27423892 G A SLC5A6 Missense_Mutation p.R580W 0.17 tolerated(0.13) benign(0.015) TCGA-VQ-A8E3-01 2 27601549 27601549 C T ZNF513 Missense_Mutation p.R195Q 0.15 deleterious(0) possibly_damaging(0.553) TCGA-VQ-A8E3-01 2 28531091 28531091 A G BRE Intron 0.30 TCGA-VQ-A8E3-01 2 29416262 29416262 G A ALK Missense_Mutation p.A1564V 0.24 deleterious(0.02) benign(0.309) TCGA-VQ-A8E3-01 2 31360948 31360948 C T GALNT14 Missense_Mutation p.R2Q 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.819) TCGA-VQ-A8E3-01 2 3197798 3197798 C T TSSC1 Missense_Mutation p.V265M 0.23 deleterious(0.01) probably_damaging(0.993) TCGA-VQ-A8E3-01 2 39239326 39239326 G A SOS1 Silent p.L777L 0.43 TCGA-VQ-A8E3-01 2 42281258 42281258 G A PKDCC Missense_Mutation p.R282Q 0.65 tolerated(0.08) benign(0.274) TCGA-VQ-A8E3-01 2 43735815 43735815 C T THADA Missense_Mutation p.R1160H 0.16 deleterious(0) probably_damaging(1) TCGA-VQ-A8E3-01 2 43937690 43937690 A C PLEKHH2 Missense_Mutation p.R759S 0.21 deleterious(0.02) benign(0.082) TCGA-VQ-A8E3-01 2 44102492 44102492 C A ABCG8 Missense_Mutation p.L566I 0.09 tolerated(0.28) benign(0.12) TCGA-VQ-A8E3-01 2 54482130 54482130 C T TSPYL6 Missense_Mutation p.A387T 0.27 tolerated(0.15) benign(0.251) TCGA-VQ-A8E3-01 2 55463850 55463850 T G MTIF2 Silent p.G706G 0.22 TCGA-VQ-A8E3-01 2 62373622 62373622 C T AC018462.2 Intron 0.23 TCGA-VQ-A8E3-01 2 68691329 68691329 T - FBXO48 3'UTR 0.48 TCGA-VQ-A8E3-01 2 79314719 79314719 A G REG1B Missense_Mutation p.F7S 0.43 tolerated(0.4) benign(0) TCGA-VQ-A8E3-01 2 86481901 86481901 T C REEP1 Silent p.V80V 0.24 TCGA-VQ-A8E3-01 2 86707487 86707487 T C KDM3A Splice_Site p.X838_splice 0.32 TCGA-VQ-A8E3-01 2 87213982 87213983 AG - RGPD1 Frame_Shift_Del p.D1315Wfs*5 0.33 TCGA-VQ-A8E3-01 2 99976805 99976805 A - EIF5B Frame_Shift_Del p.K50Sfs*10 0.18 TCGA-VQ-A8E3-01 3 108788593 108788593 C A MORC1 Missense_Mutation p.R234M 0.18 deleterious(0) possibly_damaging(0.847) TCGA-VQ-A8E3-01 3 108822740 108822740 C - MORC1 Frame_Shift_Del p.G60Dfs*13 0.15 TCGA-VQ-A8E3-01 3 112358138 112358138 G A CCDC80 Silent p.S205S 0.47 TCGA-VQ-A8E3-01 3 112730160 112730160 A C C3orf17 Silent p.P215P 0.06 TCGA-VQ-A8E3-01 3 112998711 112998711 G - BOC Frame_Shift_Del p.E689Rfs*116 0.20 TCGA-VQ-A8E3-01 3 113379060 113379060 G T KIAA2018 Missense_Mutation p.P490Q 0.19 benign(0.005) TCGA-VQ-A8E3-01 3 114070605 114070605 G A ZBTB20 Missense_Mutation p.T107M 0.28 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8E3-01 3 119449213 119449213 C T MAATS1 Missense_Mutation p.T336M 0.04 deleterious(0.03) possibly_damaging(0.62) TCGA-VQ-A8E3-01 3 120977891 120977891 G C STXBP5L Missense_Mutation p.V612L 0.26 deleterious(0) probably_damaging(0.992) TCGA-VQ-A8E3-01 3 121376175 121376175 G A HCLS1 Nonsense_Mutation p.R37* 0.23 TCGA-VQ-A8E3-01 3 121445885 121445885 C A GOLGB1 Missense_Mutation p.D136Y 0.19 possibly_damaging(0.905) TCGA-VQ-A8E3-01 3 122354697 122354697 C T PARP15 Missense_Mutation p.A596V 0.25 deleterious(0) probably_damaging(0.993) TCGA-VQ-A8E3-01 3 122447432 122447432 G A PARP14 Silent p.T1798T 0.06 TCGA-VQ-A8E3-01 3 122629865 122629865 G A SEMA5B Missense_Mutation p.T1094M 0.15 deleterious(0.01) probably_damaging(0.982) TCGA-VQ-A8E3-01 3 126132991 126132991 T C CCDC37 Missense_Mutation p.L65P 0.48 deleterious(0) probably_damaging(0.959) TCGA-VQ-A8E3-01 3 126211311 126211311 C T UROC1 Missense_Mutation p.V580M 0.32 tolerated(0.41) benign(0.254) TCGA-VQ-A8E3-01 3 12858665 12858665 G A CAND2 Missense_Mutation p.R745H 0.30 tolerated(0.42) benign(0.001) TCGA-VQ-A8E3-01 3 12881027 12881027 A G RPL32 Silent p.R33R 0.23 TCGA-VQ-A8E3-01 3 134967309 134967309 G A EPHB1 Missense_Mutation p.R883Q 0.17 tolerated(0.07) possibly_damaging(0.588) TCGA-VQ-A8E3-01 3 138195335 138195336 - T ESYT3 Splice_Site p.X875_splice 0.17 TCGA-VQ-A8E3-01 3 142218557 142218557 G A ATR Silent p.S1764S 0.19 TCGA-VQ-A8E3-01 3 142681687 142681687 G A PAQR9 Silent p.Y164Y 0.28 TCGA-VQ-A8E3-01 3 142754834 142754834 T C U2SURP Missense_Mutation p.M651T 0.12 deleterious(0.04) benign(0.258) TCGA-VQ-A8E3-01 3 147108783 147108783 G A ZIC4 Silent p.C363C 0.39 TCGA-VQ-A8E3-01 3 148575275 148575275 T G CPB1 Missense_Mutation p.L338R 0.07 deleterious(0) probably_damaging(1) TCGA-VQ-A8E3-01 3 15084512 15084512 A G NR2C2 Silent p.L615L 0.24 TCGA-VQ-A8E3-01 3 15292665 15292665 G A CAPN7 Silent p.G780G 0.10 TCGA-VQ-A8E3-01 3 160786690 160786690 C T PPM1L Silent p.N276N 0.19 TCGA-VQ-A8E3-01 3 165547794 165547795 - T BCHE Frame_Shift_Ins p.T343Nfs*8 0.18 TCGA-VQ-A8E3-01 3 170140967 170140967 C T CLDN11 Silent p.C81C 0.17 TCGA-VQ-A8E3-01 3 172643165 172643166 - T SPATA16 Frame_Shift_Ins p.I400Nfs*13 0.21 TCGA-VQ-A8E3-01 3 183705588 183705588 C T ABCC5 Missense_Mutation p.M187I 0.18 tolerated(1) benign(0.004) TCGA-VQ-A8E3-01 3 184299391 184299391 C T EPHB3 Missense_Mutation p.T993M 0.16 tolerated(0.17) possibly_damaging(0.551) TCGA-VQ-A8E3-01 3 184800693 184800693 G A C3orf70 3'UTR 0.25 TCGA-VQ-A8E3-01 3 185823093 185823093 C T ETV5 Splice_Site p.X78_splice 0.25 TCGA-VQ-A8E3-01 3 192516280 192516280 T - MB21D2 Frame_Shift_Del p.K457Nfs*5 0.17 TCGA-VQ-A8E3-01 3 194151016 194151016 C T ATP13A3 Missense_Mutation p.A885T 0.05 deleterious(0.01) probably_damaging(0.993) TCGA-VQ-A8E3-01 3 195594284 195594284 C T TNK2 Missense_Mutation p.G1025D 0.20 tolerated_low_confidence(0.1) possibly_damaging(0.692) TCGA-VQ-A8E3-01 3 23574048 23574048 A G UBE2E2 Missense_Mutation p.T122A 0.18 tolerated(0.2) benign(0.253) TCGA-VQ-A8E3-01 3 27761715 27761715 C T EOMES Missense_Mutation p.R328H 0.11 deleterious(0) probably_damaging(1) TCGA-VQ-A8E3-01 3 30713800 30713800 C T TGFBR2 Silent p.I400I 0.15 TCGA-VQ-A8E3-01 3 3179009 3179009 G T TRNT1 Nonsense_Mutation p.G72* 0.15 TCGA-VQ-A8E3-01 3 33450275 33450275 A G UBP1 Silent p.P278P 0.15 TCGA-VQ-A8E3-01 3 36897615 36897615 C A TRANK1 Missense_Mutation p.V1156L 0.10 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8E3-01 3 36897682 36897682 T A TRANK1 Missense_Mutation p.E1133D 0.15 tolerated(0.15) benign(0.056) TCGA-VQ-A8E3-01 3 38781162 38781162 A - SCN10A Frame_Shift_Del p.F708Lfs*32 0.16 TCGA-VQ-A8E3-01 3 39307683 39307683 G A CX3CR1 Silent p.T138T 0.18 TCGA-VQ-A8E3-01 3 42678478 42678478 A - NKTR Frame_Shift_Del p.K429Nfs*37 0.21 TCGA-VQ-A8E3-01 3 43121743 43121743 C T POMGNT2 Missense_Mutation p.R394Q 0.33 tolerated(0.39) benign(0.008) TCGA-VQ-A8E3-01 3 47041516 47041516 A G NBEAL2 Silent p.S1309S 0.28 TCGA-VQ-A8E3-01 3 47852192 47852192 T A DHX30 Missense_Mutation p.F7I 0.05 tolerated_low_confidence(0.22) benign(0.307) TCGA-VQ-A8E3-01 3 48637116 48637116 T G UQCRC1 Missense_Mutation p.I444L 0.27 deleterious(0) benign(0.01) TCGA-VQ-A8E3-01 3 48697393 48697393 C T CELSR3 Missense_Mutation p.R892H 0.26 deleterious(0) probably_damaging(1) TCGA-VQ-A8E3-01 3 49049096 49049096 C T WDR6 Silent p.S73S 0.25 TCGA-VQ-A8E3-01 3 49152435 49152435 T G USP19 Missense_Mutation p.K711T 0.24 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8E3-01 3 49680455 49680455 C T BSN Missense_Mutation p.A463V 0.38 unknown(0) TCGA-VQ-A8E3-01 3 49699714 49699714 C T BSN Missense_Mutation p.A3479V 0.29 unknown(0) TCGA-VQ-A8E3-01 3 50095865 50095865 C T RBM6 Missense_Mutation p.T667I 0.28 deleterious(0) probably_damaging(1) TCGA-VQ-A8E3-01 3 50324159 50324159 T C LSMEM2 Missense_Mutation p.L76P 0.26 deleterious(0.01) probably_damaging(0.972) TCGA-VQ-A8E3-01 3 51672273 51672273 G A RAD54L2 Missense_Mutation p.R599Q 0.34 tolerated(0.17) benign(0.389) TCGA-VQ-A8E3-01 3 56330392 56330392 C T ERC2 Silent p.Q243Q 0.24 TCGA-VQ-A8E3-01 3 57132443 57132443 C T IL17RD Missense_Mutation p.V430M 0.26 deleterious(0.03) probably_damaging(0.983) TCGA-VQ-A8E3-01 3 57311829 57311829 T - ASB14 Frame_Shift_Del p.K517Nfs*12 0.18 TCGA-VQ-A8E3-01 3 58380724 58380724 G A PXK Splice_Site p.X206_splice 0.20 TCGA-VQ-A8E3-01 3 58552312 58552312 G T FAM107A 3'UTR 0.19 TCGA-VQ-A8E3-01 3 58855065 58855065 A G C3orf67 Missense_Mutation p.V210A 0.36 tolerated(0.22) benign(0.004) TCGA-VQ-A8E3-01 3 64132640 64132640 T G PRICKLE2 Missense_Mutation p.E509A 0.06 tolerated(0.54) benign(0) TCGA-VQ-A8E3-01 3 64619547 64619547 T - ADAMTS9 Frame_Shift_Del p.N622Mfs*7 0.19 TCGA-VQ-A8E3-01 3 71027017 71027017 C A FOXP1 Missense_Mutation p.R439M 0.33 deleterious(0.01) probably_damaging(0.984) TCGA-VQ-A8E3-01 3 72799428 72799428 C A SHQ1 3'UTR 0.23 TCGA-VQ-A8E3-01 3 77595561 77595561 A G ROBO2 Missense_Mutation p.E352G 0.28 tolerated(0.2) possibly_damaging(0.728) TCGA-VQ-A8E3-01 4 100870501 100870501 T A H2AFZ Missense_Mutation p.T42S 0.38 tolerated(0.28) benign(0.052) TCGA-VQ-A8E3-01 4 103590207 103590207 C A MANBA Splice_Site p.X411_splice 0.56 TCGA-VQ-A8E3-01 4 106157902 106157902 G T TET2 Nonsense_Mutation p.G935* 0.37 TCGA-VQ-A8E3-01 4 107037441 107037441 G A TBCK Missense_Mutation p.T777I 0.39 tolerated(0.07) benign(0.01) TCGA-VQ-A8E3-01 4 110897356 110897356 G A EGF Missense_Mutation p.G673D 0.54 deleterious(0) probably_damaging(1) TCGA-VQ-A8E3-01 4 114278110 114278110 C T ANK2 Missense_Mutation p.A2779V 0.44 benign(0.018) TCGA-VQ-A8E3-01 4 119979152 119979152 T C SYNPO2 3'UTR 0.77 TCGA-VQ-A8E3-01 4 123183961 123183961 A G KIAA1109 Missense_Mutation p.T2269A 0.41 probably_damaging(0.986) TCGA-VQ-A8E3-01 4 123192650 123192650 A G KIAA1109 Silent p.S2657S 0.39 TCGA-VQ-A8E3-01 4 126411869 126411869 C T FAT4 Missense_Mutation p.S4631L 0.48 probably_damaging(0.986) TCGA-VQ-A8E3-01 4 13600626 13600626 G T BOD1L1 Missense_Mutation p.P2633H 0.34 benign(0) TCGA-VQ-A8E3-01 4 145568082 145568082 G A HHIP Silent p.P85P 0.19 TCGA-VQ-A8E3-01 4 155155847 155155847 A T DCHS2 Silent p.S2864S 0.48 TCGA-VQ-A8E3-01 4 164247345 164247345 C T NPY1R Missense_Mutation p.C121Y 0.40 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8E3-01 4 164393978 164393978 T C TKTL2 Silent p.T303T 0.06 TCGA-VQ-A8E3-01 4 169190060 169190060 G A DDX60 Nonsense_Mutation p.R911* 0.24 TCGA-VQ-A8E3-01 4 1807396 1807396 G A FGFR3 Missense_Mutation p.G551R 0.09 deleterious(0) probably_damaging(1) TCGA-VQ-A8E3-01 4 185340660 185340660 T - IRF2 Frame_Shift_Del p.D51Mfs*19 0.28 TCGA-VQ-A8E3-01 4 36231022 36231022 C G ARAP2 Missense_Mutation p.E29D 0.34 tolerated(0.24) benign(0.021) TCGA-VQ-A8E3-01 4 39978112 39978113 - C PDS5A Frame_Shift_Ins p.V29Gfs*34 0.26 TCGA-VQ-A8E3-01 4 55154972 55154972 C - PDGFRA Frame_Shift_Del p.P895Lfs*5 0.36 TCGA-VQ-A8E3-01 4 5837716 5837716 C T CRMP1 Missense_Mutation p.V517M 0.39 deleterious(0.02) benign(0.144) TCGA-VQ-A8E3-01 4 73956800 73956800 G - ANKRD17 Frame_Shift_Del p.P2182Lfs*43 0.16 TCGA-VQ-A8E3-01 4 7435533 7435535 CTT - PSAPL1 In_Frame_Del p.K358del 0.39 TCGA-VQ-A8E3-01 4 85694075 85694075 G A WDFY3 Nonsense_Mutation p.Q1588* 0.23 TCGA-VQ-A8E3-01 5 112389424 112389424 T C MCC Missense_Mutation p.K816E 0.24 deleterious(0) probably_damaging(0.979) TCGA-VQ-A8E3-01 5 131008376 131008376 T C FNIP1 Silent p.T587T 0.32 TCGA-VQ-A8E3-01 5 131676324 131676324 C - SLC22A4 Frame_Shift_Del p.L505Ffs*9 0.21 TCGA-VQ-A8E3-01 5 134146993 134146993 C T DDX46 Missense_Mutation p.A744V 0.20 tolerated(0.5) benign(0.002) TCGA-VQ-A8E3-01 5 139722374 139722374 C T HBEGF Missense_Mutation p.A82T 0.30 deleterious(0.05) benign(0.133) TCGA-VQ-A8E3-01 5 139905676 139905676 A - ANKHD1 Frame_Shift_Del p.R1532Gfs*5 0.26 TCGA-VQ-A8E3-01 5 139943485 139943486 - C APBB3 Frame_Shift_Ins p.D22Gfs*32 0.15 TCGA-VQ-A8E3-01 5 140263790 140263790 G A PCDHA13 Missense_Mutation p.R646H 0.32 deleterious_low_confidence(0.04) benign(0.082) TCGA-VQ-A8E3-01 5 140432795 140432795 T C PCDHB1 Silent p.S580S 0.22 TCGA-VQ-A8E3-01 5 1443243 1443243 C T SLC6A3 Missense_Mutation p.V24M 0.13 tolerated(1) benign(0.003) TCGA-VQ-A8E3-01 5 145883505 145883506 GA - TCERG1 Frame_Shift_Del p.E892Afs*17 0.13 TCGA-VQ-A8E3-01 5 149919816 149919816 C T NDST1 Missense_Mutation p.P580L 0.13 deleterious(0) probably_damaging(0.969) TCGA-VQ-A8E3-01 5 150056367 150056367 G A MYOZ3 Missense_Mutation p.R229H 0.09 tolerated(0.08) probably_damaging(0.934) TCGA-VQ-A8E3-01 5 150696558 150696558 C T SLC36A2 Silent p.P424P 0.19 TCGA-VQ-A8E3-01 5 153407771 153407771 C A FAM114A2 Nonsense_Mutation p.E190* 0.30 TCGA-VQ-A8E3-01 5 154297566 154297566 T C GEMIN5 Splice_Site p.X534_splice 0.28 TCGA-VQ-A8E3-01 5 159776752 159776752 C T C1QTNF2 Missense_Mutation p.G139E 0.22 deleterious(0) unknown(0) TCGA-VQ-A8E3-01 5 16477821 16477821 C A FAM134B Missense_Mutation p.G317V 0.08 deleterious(0) probably_damaging(1) TCGA-VQ-A8E3-01 5 167855768 167855768 C T WWC1 Missense_Mutation p.A659V 0.26 tolerated(0.08) benign(0.001) TCGA-VQ-A8E3-01 5 167882397 167882397 T C WWC1 Missense_Mutation p.S899P 0.33 tolerated(0.12) benign(0.011) TCGA-VQ-A8E3-01 5 17354205 17354205 T - CTD-2139B15.2 Intron 0.20 TCGA-VQ-A8E3-01 5 176025671 176025671 A G GPRIN1 Missense_Mutation p.S389P 0.08 tolerated(0.07) benign(0.001) TCGA-VQ-A8E3-01 5 176395861 176395861 G T UIMC1 Missense_Mutation p.Q299K 0.31 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8E3-01 5 176522559 176522559 C T FGFR4 Silent p.C552C 0.24 TCGA-VQ-A8E3-01 5 176637876 176637876 A G NSD1 Missense_Mutation p.S826G 0.38 deleterious_low_confidence(0) benign(0.08) TCGA-VQ-A8E3-01 5 177681952 177681952 T C COL23A1 Missense_Mutation p.K320E 0.28 deleterious(0.02) possibly_damaging(0.654) TCGA-VQ-A8E3-01 5 180377459 180377459 A G BTNL8 Missense_Mutation p.Q473R 0.26 tolerated(0.72) benign(0.009) TCGA-VQ-A8E3-01 5 24492949 24492949 T C CDH10 Missense_Mutation p.N534S 0.23 deleterious(0.05) possibly_damaging(0.587) TCGA-VQ-A8E3-01 5 32090701 32090701 G T PDZD2 Missense_Mutation p.G2383C 0.25 tolerated(0.13) benign(0.025) TCGA-VQ-A8E3-01 5 32355834 32355834 T - ZFR 3'UTR 0.19 TCGA-VQ-A8E3-01 5 32712325 32712325 C T NPR3 Missense_Mutation p.S148L 0.19 tolerated(0.08) possibly_damaging(0.899) TCGA-VQ-A8E3-01 5 33938162 33938162 G A RXFP3 Silent p.A439A 0.42 TCGA-VQ-A8E3-01 5 34880376 34880376 A - TTC23L Frame_Shift_Del p.E347Dfs*40 0.20 TCGA-VQ-A8E3-01 5 35704686 35704686 A G SPEF2 Missense_Mutation p.E810G 0.21 tolerated(0.06) benign(0.018) TCGA-VQ-A8E3-01 5 3600720 3600721 - AG IRX1 Intron p.D440Efs*14 0.17 TCGA-VQ-A8E3-01 5 37007575 37007575 A G NIPBL Missense_Mutation p.Q1413R 0.18 deleterious(0.04) benign(0.169) TCGA-VQ-A8E3-01 5 41807484 41807484 C T OXCT1 Silent p.Q263Q 0.38 TCGA-VQ-A8E3-01 5 41853607 41853607 G A OXCT1 Missense_Mutation p.R110C 0.22 deleterious(0.01) probably_damaging(0.991) TCGA-VQ-A8E3-01 5 43487069 43487070 - T C5orf34 Frame_Shift_Ins p.T622Nfs*3 0.18 TCGA-VQ-A8E3-01 5 54570442 54570442 C T DHX29 Missense_Mutation p.R897Q 0.09 tolerated(0.09) probably_damaging(0.995) TCGA-VQ-A8E3-01 5 5464216 5464216 A - KIAA0947 Frame_Shift_Del p.A1592Lfs*14 0.21 TCGA-VQ-A8E3-01 5 55396116 55396116 G T ANKRD55 Missense_Mutation p.P580H 0.21 deleterious_low_confidence(0.02) benign(0.009) TCGA-VQ-A8E3-01 5 57755682 57755682 C T PLK2 Silent p.P35P 0.32 TCGA-VQ-A8E3-01 5 61688029 61688029 T - DIMT1 Frame_Shift_Del p.N254Tfs*12 0.17 TCGA-VQ-A8E3-01 5 64886277 64886277 A G TRIM23 3'UTR 0.29 TCGA-VQ-A8E3-01 5 71492077 71492077 C T MAP1B Silent p.S965S 0.10 TCGA-VQ-A8E3-01 5 75902013 75902013 C T IQGAP2 Silent p.N414N 0.23 TCGA-VQ-A8E3-01 5 79031876 79031876 A G CMYA5 Missense_Mutation p.K2430E 0.09 benign(0.001) TCGA-VQ-A8E3-01 5 81613836 81613837 - G ATP6AP1L Frame_Shift_Ins p.R134Tfs*48 0.23 TCGA-VQ-A8E3-01 5 86658425 86658425 C T RASA1 Missense_Mutation p.R464C 0.30 deleterious(0) possibly_damaging(0.649) TCGA-VQ-A8E3-01 5 88018607 88018607 C T MEF2C Silent p.T422T 0.31 TCGA-VQ-A8E3-01 6 106553392 106553392 G - PRDM1 Frame_Shift_Del p.G454Afs*52 0.30 TCGA-VQ-A8E3-01 6 107955305 107955305 C A SOBP Silent p.A419A 0.32 TCGA-VQ-A8E3-01 6 10955429 10955429 A G SYCP2L Missense_Mutation p.T679A 0.29 tolerated(0.88) benign(0.001) TCGA-VQ-A8E3-01 6 116832953 116832953 C T FAM26E Missense_Mutation p.R32C 0.09 deleterious(0.02) probably_damaging(0.988) TCGA-VQ-A8E3-01 6 12161823 12161823 G A HIVEP1 Silent p.P2213P 0.38 TCGA-VQ-A8E3-01 6 131923465 131923465 G A MED23 Missense_Mutation p.P663L 0.25 tolerated(0.06) probably_damaging(0.999) TCGA-VQ-A8E3-01 6 132966764 132966765 CA - TAAR1 Nonsense_Mutation p.C126* 0.23 TCGA-VQ-A8E3-01 6 133833901 133833901 A G EYA4 Missense_Mutation p.N442D 0.29 deleterious(0) possibly_damaging(0.744) TCGA-VQ-A8E3-01 6 157963716 157963716 C A ZDHHC14 Missense_Mutation p.S115R 0.14 tolerated(0.05) benign(0.084) TCGA-VQ-A8E3-01 6 159653503 159653503 T C FNDC1 Silent p.A653A 0.38 TCGA-VQ-A8E3-01 6 25670233 25670233 C A SCGN Missense_Mutation p.L134I 0.23 deleterious(0.03) possibly_damaging(0.555) TCGA-VQ-A8E3-01 6 29364938 29364938 C T OR12D2 Silent p.A154A 0.37 TCGA-VQ-A8E3-01 6 30557959 30557959 T C ABCF1 Missense_Mutation p.L756P 0.33 deleterious(0) probably_damaging(0.989) TCGA-VQ-A8E3-01 6 30621048 30621048 T - DHX16 Frame_Shift_Del p.I1033* 0.24 TCGA-VQ-A8E3-01 6 30653668 30653668 A G PPP1R18 Missense_Mutation p.L43P 0.16 deleterious(0) probably_damaging(0.975) TCGA-VQ-A8E3-01 6 30865940 30865940 G A DDR1 Silent p.T775T 0.40 TCGA-VQ-A8E3-01 6 30881797 30881797 A G GTF2H4 3'UTR 0.50 TCGA-VQ-A8E3-01 6 31631717 31631717 G A GPANK1 Missense_Mutation p.A180V 0.19 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8E3-01 6 32023842 32023842 C T TNXB Silent p.S2751S 0.38 TCGA-VQ-A8E3-01 6 33391325 33391325 C T SYNGAP1 Missense_Mutation p.R47W 0.59 deleterious(0) possibly_damaging(0.824) TCGA-VQ-A8E3-01 6 38120235 38120235 A G ZFAND3 3'UTR 0.37 TCGA-VQ-A8E3-01 6 41555186 41555186 C - FOXP4 Frame_Shift_Del p.L272Sfs*95 0.29 TCGA-VQ-A8E3-01 6 41654895 41654895 C T TFEB Missense_Mutation p.R247Q 0.45 deleterious(0) probably_damaging(0.985) TCGA-VQ-A8E3-01 6 41707673 41707673 C T PGC Missense_Mutation p.G260D 0.31 tolerated(0.09) benign(0.091) TCGA-VQ-A8E3-01 6 42689928 42689928 T C PRPH2 Missense_Mutation p.S49G 0.31 tolerated(0.22) benign(0.049) TCGA-VQ-A8E3-01 6 43042422 43042422 G C KLC4 3'UTR 0.23 TCGA-VQ-A8E3-01 6 44221447 44221447 T - HSP90AB1 3'UTR 0.19 TCGA-VQ-A8E3-01 6 48036258 48036258 A - PTCHD4 Frame_Shift_Del p.F45Sfs*8 0.44 TCGA-VQ-A8E3-01 6 51524002 51524002 A G PKHD1 Missense_Mutation p.M3641T 0.29 tolerated(0.39) benign(0.142) TCGA-VQ-A8E3-01 6 56362673 56362673 A T DST Missense_Mutation p.L4069Q 0.17 probably_damaging(1) TCGA-VQ-A8E3-01 6 70040434 70040434 T C BAI3 Silent p.A1024A 0.29 TCGA-VQ-A8E3-01 6 76532547 76532547 A - MYO6 Frame_Shift_Del p.D58Mfs*8 0.28 TCGA-VQ-A8E3-01 6 78172937 78172937 C T HTR1B Missense_Mutation p.A62T 0.27 deleterious(0.05) benign(0.398) TCGA-VQ-A8E3-01 6 90421897 90421897 G A MDN1 Silent p.V2503V 0.21 TCGA-VQ-A8E3-01 6 99374518 99374518 C T FBXL4 Missense_Mutation p.R116K 0.52 tolerated(0.11) probably_damaging(0.986) TCGA-VQ-A8E3-01 7 100484473 100484473 G A SRRT Missense_Mutation p.V569I 0.24 deleterious(0.02) benign(0.067) TCGA-VQ-A8E3-01 7 100817823 100817823 C T NAT16 Missense_Mutation p.R89Q 0.13 tolerated(0.81) benign(0.001) TCGA-VQ-A8E3-01 7 103828747 103828749 AAG - ORC5 In_Frame_Del p.L212del 0.24 TCGA-VQ-A8E3-01 7 104717578 104717578 A - KMT2E Frame_Shift_Del p.E315Rfs*2 0.17 TCGA-VQ-A8E3-01 7 107559534 107559534 A G DLD Missense_Mutation p.H485R 0.30 deleterious(0) probably_damaging(1) TCGA-VQ-A8E3-01 7 110764016 110764016 C T LRRN3 Silent p.C396C 0.25 TCGA-VQ-A8E3-01 7 110764636 110764637 - A LRRN3 Frame_Shift_Ins p.C606Mfs*12 0.17 TCGA-VQ-A8E3-01 7 117176703 117176703 A - CFTR Frame_Shift_Del p.M284* 0.21 TCGA-VQ-A8E3-01 7 117232346 117232346 C T CFTR Nonsense_Mutation p.R709* 0.26 TCGA-VQ-A8E3-01 7 117307188 117307188 A T CFTR 3'UTR 0.23 TCGA-VQ-A8E3-01 7 122131430 122131430 C T CADPS2 Silent p.K529K 0.22 TCGA-VQ-A8E3-01 7 123332557 123332557 A G WASL Silent p.H397H 0.06 TCGA-VQ-A8E3-01 7 124469306 124469306 A T POT1 Splice_Site p.X532_splice 0.12 TCGA-VQ-A8E3-01 7 128394604 128394604 C T CALU Silent p.D89D 0.38 TCGA-VQ-A8E3-01 7 128588983 128588983 G T IRF5 3'Flank 0.23 TCGA-VQ-A8E3-01 7 130021680 130021680 C T CPA1 Silent p.Y119Y 0.18 TCGA-VQ-A8E3-01 7 131195934 131195934 A T PODXL Missense_Mutation p.I120N 0.12 tolerated(0.25) benign(0) TCGA-VQ-A8E3-01 7 131829903 131829903 C T PLXNA4 Missense_Mutation p.V1734I 0.15 deleterious(0.01) probably_damaging(0.997) TCGA-VQ-A8E3-01 7 134363775 134363775 A - BPGM Frame_Shift_Del p.K259Nfs*24 0.14 TCGA-VQ-A8E3-01 7 134871801 134871802 - G WDR91 Frame_Shift_Ins p.R668Qfs*8 0.27 TCGA-VQ-A8E3-01 7 148511064 148511064 C T EZH2 Missense_Mutation p.R613Q 0.25 deleterious(0) benign(0.097) TCGA-VQ-A8E3-01 7 149576633 149576633 G T ATP6V0E2 Missense_Mutation p.G170V 0.23 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-VQ-A8E3-01 7 150845816 150845816 G A GBX1 Missense_Mutation p.R318C 0.40 deleterious(0) probably_damaging(1) TCGA-VQ-A8E3-01 7 151845366 151845366 C T KMT2C Missense_Mutation p.R4549H 0.24 probably_damaging(0.999) TCGA-VQ-A8E3-01 7 152345769 152345769 T - XRCC2 Frame_Shift_Del p.K267Nfs*30 0.19 TCGA-VQ-A8E3-01 7 152346220 152346220 A - XRCC2 Frame_Shift_Del p.L117Wfs*17 0.30 TCGA-VQ-A8E3-01 7 155604780 155604780 C T SHH Missense_Mutation p.V13I 0.27 tolerated(1) unknown(0) TCGA-VQ-A8E3-01 7 157926432 157926432 C T PTPRN2 Missense_Mutation p.G498D 0.23 tolerated(0.09) benign(0.338) TCGA-VQ-A8E3-01 7 17931173 17931173 T C SNX13 Missense_Mutation p.Q105R 0.24 tolerated(0.14) benign(0.2) TCGA-VQ-A8E3-01 7 21631141 21631141 A - DNAH11 Frame_Shift_Del p.K873Nfs*4 0.16 TCGA-VQ-A8E3-01 7 21826309 21826309 T C DNAH11 Missense_Mutation p.V3229A 0.12 probably_damaging(0.999) TCGA-VQ-A8E3-01 7 24902869 24902869 T C OSBPL3 Missense_Mutation p.R274G 0.24 deleterious(0.01) benign(0.279) TCGA-VQ-A8E3-01 7 2565318 2565318 G A LFNG Splice_Site p.X246_splice 0.20 TCGA-VQ-A8E3-01 7 2583380 2583380 T C BRAT1 Missense_Mutation p.Q216R 0.21 tolerated(0.07) benign(0.037) TCGA-VQ-A8E3-01 7 32620433 32620433 C T AVL9 Missense_Mutation p.R588C 0.25 deleterious(0.01) possibly_damaging(0.81) TCGA-VQ-A8E3-01 7 33195283 33195283 T A BBS9 Missense_Mutation p.H99Q 0.40 tolerated(0.05) probably_damaging(0.943) TCGA-VQ-A8E3-01 7 36909995 36909995 T C ELMO1 Intron 0.21 TCGA-VQ-A8E3-01 7 41729603 41729603 C T INHBA Missense_Mutation p.R309Q 0.17 deleterious(0) possibly_damaging(0.631) TCGA-VQ-A8E3-01 7 43400515 43400515 A G HECW1 Missense_Mutation p.H164R 0.13 tolerated(0.06) benign(0.071) TCGA-VQ-A8E3-01 7 43594298 43594298 G A HECW1 Missense_Mutation p.V1540M 0.19 deleterious(0) probably_damaging(0.994) TCGA-VQ-A8E3-01 7 44149894 44149894 G A AEBP1 Missense_Mutation p.R450K 0.20 deleterious(0.03) probably_damaging(0.927) TCGA-VQ-A8E3-01 7 44684945 44684945 G A OGDH Missense_Mutation p.R81H 0.15 deleterious(0.04) possibly_damaging(0.748) TCGA-VQ-A8E3-01 7 47930165 47930165 A G PKD1L1 Missense_Mutation p.S884P 0.13 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8E3-01 7 51261087 51261087 T C COBL Missense_Mutation p.K149E 0.34 deleterious(0) probably_damaging(0.98) TCGA-VQ-A8E3-01 7 53103647 53103647 G A POM121L12 Missense_Mutation p.E95K 0.48 deleterious(0.01) possibly_damaging(0.81) TCGA-VQ-A8E3-01 7 5348924 5348924 C T TNRC18 Missense_Mutation p.G2822R 0.20 unknown(0) TCGA-VQ-A8E3-01 7 54612440 54612440 C G VSTM2A Missense_Mutation p.P69A 0.33 tolerated(0.27) benign(0.036) TCGA-VQ-A8E3-01 7 5925729 5925729 G A OCM 3'UTR 0.14 TCGA-VQ-A8E3-01 7 64292176 64292176 A - ZNF138 Frame_Shift_Del p.I162Ffs*56 0.14 TCGA-VQ-A8E3-01 7 65439545 65439545 G A GUSB Silent p.I404I 0.18 TCGA-VQ-A8E3-01 7 6647617 6647617 C A C7orf26 Missense_Mutation p.P392H 0.21 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-VQ-A8E3-01 7 6776864 6776864 T C PMS2CL RNA 0.20 TCGA-VQ-A8E3-01 7 72040650 72040650 G T TYW1B Missense_Mutation p.L240I 0.15 deleterious(0.03) probably_damaging(0.987) TCGA-VQ-A8E3-01 7 73097752 73097752 A G DNAJC30 Translation_Start_Site p.M1? 0.17 deleterious_low_confidence(0) benign(0.042) TCGA-VQ-A8E3-01 7 75511257 75511257 G A RHBDD2 Missense_Mutation p.V97I 0.15 deleterious(0.05) benign(0.307) TCGA-VQ-A8E3-01 7 75625795 75625795 C T STYXL1 Silent p.P311P 0.30 TCGA-VQ-A8E3-01 7 77423642 77423642 G A TMEM60 Silent p.L17L 0.17 TCGA-VQ-A8E3-01 7 79082723 79082723 G A MAGI2 5'UTR 0.19 TCGA-VQ-A8E3-01 7 83037788 83037788 G A SEMA3E Missense_Mutation p.A189V 0.21 tolerated(0.23) benign(0.004) TCGA-VQ-A8E3-01 7 87170766 87170766 A G ABCB1 Silent p.I742I 0.22 TCGA-VQ-A8E3-01 7 899770 899770 C T SUN1 Silent p.D510D 0.10 TCGA-VQ-A8E3-01 7 913016 913016 G A SUN1 3'UTR 0.18 TCGA-VQ-A8E3-01 7 91936914 91936914 A - ANKIB1 Frame_Shift_Del p.N146Tfs*12 0.23 TCGA-VQ-A8E3-01 7 92098287 92098287 T G ERVW-1 Missense_Mutation p.N470T 0.25 deleterious(0.04) benign(0.217) TCGA-VQ-A8E3-01 7 92818505 92818505 T A HEPACAM2 3'UTR 0.16 TCGA-VQ-A8E3-01 7 92987862 92987862 T - CCDC132 3'UTR 0.21 TCGA-VQ-A8E3-01 7 93625610 93625610 T A BET1 Missense_Mutation p.E56D 0.11 deleterious(0.01) possibly_damaging(0.672) TCGA-VQ-A8E3-01 7 94185017 94185017 T - CASD1 Frame_Shift_Del p.C783Vfs*21 0.19 TCGA-VQ-A8E3-01 7 95761172 95761172 G A SLC25A13 Missense_Mutation p.R493W 0.19 deleterious(0.01) probably_damaging(0.954) TCGA-VQ-A8E3-01 7 98551048 98551048 G A TRRAP Missense_Mutation p.V1901I 0.06 possibly_damaging(0.84) TCGA-VQ-A8E3-01 7 99668628 99668628 G A ZNF3 3'UTR 0.15 TCGA-VQ-A8E3-01 8 102381483 102381483 C T NACAP1 RNA 0.28 TCGA-VQ-A8E3-01 8 103663649 103663649 G - KLF10 Frame_Shift_Del p.P304Lfs*31 0.25 TCGA-VQ-A8E3-01 8 11412929 11412929 C - BLK Frame_Shift_Del p.R238Gfs*27 0.17 TCGA-VQ-A8E3-01 8 120114626 120114626 A - COLEC10 Frame_Shift_Del p.G113Afs*30 0.25 TCGA-VQ-A8E3-01 8 121706127 121706127 G A SNTB1 Missense_Mutation p.T198M 0.27 deleterious(0) possibly_damaging(0.579) TCGA-VQ-A8E3-01 8 121823695 121823695 C - SNTB1 Frame_Shift_Del p.G130Afs*34 0.22 TCGA-VQ-A8E3-01 8 130866552 130866552 T C FAM49B Missense_Mutation p.Y159C 0.22 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8E3-01 8 131073266 131073266 C T ASAP1 Silent p.P917P 0.25 TCGA-VQ-A8E3-01 8 135521875 135521875 G A ZFAT Missense_Mutation p.T1160I 0.18 deleterious(0.01) probably_damaging(0.996) TCGA-VQ-A8E3-01 8 143558561 143558561 G A BAI1 Missense_Mutation p.V382M 0.20 deleterious(0.03) possibly_damaging(0.867) TCGA-VQ-A8E3-01 8 143763464 143763464 G A PSCA Missense_Mutation p.G87R 0.31 tolerated(0.22) unknown(0) TCGA-VQ-A8E3-01 8 144893219 144893219 A G SCRIB Missense_Mutation p.L377P 0.39 probably_damaging(1) TCGA-VQ-A8E3-01 8 145101542 145101543 CA - SPATC1 Frame_Shift_Del p.S488* 0.27 TCGA-VQ-A8E3-01 8 146107176 146107176 A G ZNF250 Silent p.H469H 0.26 TCGA-VQ-A8E3-01 8 17157562 17157562 C T MTMR7 Missense_Mutation p.D598N 0.08 tolerated(0.17) benign(0.256) TCGA-VQ-A8E3-01 8 18541503 18541503 A G PSD3 Intron 0.24 TCGA-VQ-A8E3-01 8 22428678 22428679 - C SORBS3 Frame_Shift_Ins p.R565Pfs*13 0.16 TCGA-VQ-A8E3-01 8 22548475 22548475 A G EGR3 Silent p.I225I 0.28 TCGA-VQ-A8E3-01 8 30537007 30537007 C A GSR 3'UTR 0.30 TCGA-VQ-A8E3-01 8 37732239 37732239 C T RAB11FIP1 Silent p.P472P 0.31 TCGA-VQ-A8E3-01 8 42166502 42166502 G A IKBKB Silent p.T217T 0.29 TCGA-VQ-A8E3-01 8 42188549 42188549 C T IKBKB 3'UTR 0.27 TCGA-VQ-A8E3-01 8 42275272 42275272 G A SLC20A2 3'UTR 0.39 TCGA-VQ-A8E3-01 8 62475356 62475356 C T ASPH Missense_Mutation p.V462M 0.30 deleterious(0) probably_damaging(0.994) TCGA-VQ-A8E3-01 8 70981460 70981460 G A PRDM14 Silent p.S212S 0.30 TCGA-VQ-A8E3-01 8 77767090 77767090 A - ZFHX4 Frame_Shift_Del p.R2647Gfs*44 0.15 TCGA-VQ-A8E3-01 8 88365898 88365898 T C CNBD1 Missense_Mutation p.L396P 0.25 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8E3-01 8 99039775 99039775 G A MATN2 Missense_Mutation p.A692T 0.22 tolerated(1) possibly_damaging(0.661) TCGA-VQ-A8E3-01 8 99168550 99168550 G A POP1 Missense_Mutation p.C777Y 0.25 deleterious(0.03) possibly_damaging(0.615) TCGA-VQ-A8E3-01 9 107548659 107548659 A G ABCA1 Silent p.C2107C 0.17 TCGA-VQ-A8E3-01 9 107623985 107623985 A G ABCA1 Missense_Mutation p.L173P 0.25 deleterious(0.03) benign(0.088) TCGA-VQ-A8E3-01 9 113704085 113704085 C T LPAR1 Missense_Mutation p.A137T 0.28 tolerated(0.32) benign(0.207) TCGA-VQ-A8E3-01 9 123367629 123367629 A G MEGF9 Missense_Mutation p.F550L 0.24 deleterious(0) probably_damaging(0.993) TCGA-VQ-A8E3-01 9 123912690 123912690 C - CNTRL Frame_Shift_Del p.N1300Tfs*22 0.29 TCGA-VQ-A8E3-01 9 125582400 125582400 C T PDCL Silent p.T290T 0.19 TCGA-VQ-A8E3-01 9 127572279 127572279 G A OLFML2A Missense_Mutation p.R516H 0.38 deleterious(0.01) possibly_damaging(0.812) TCGA-VQ-A8E3-01 9 13106845 13106845 T C MPDZ 3'UTR 0.29 TCGA-VQ-A8E3-01 9 131395148 131395148 G A SPTAN1 Missense_Mutation p.V2408I 0.35 tolerated(0.77) benign(0.018) TCGA-VQ-A8E3-01 9 131860836 131860836 G A CRAT Silent p.I393I 0.30 TCGA-VQ-A8E3-01 9 134350633 134350633 C T PRRC2B Silent p.S1039S 0.16 TCGA-VQ-A8E3-01 9 135940467 135940467 C T CEL Silent p.G130G 0.31 TCGA-VQ-A8E3-01 9 136305510 136305510 T C ADAMTS13 Missense_Mutation p.I611T 0.40 deleterious(0.02) possibly_damaging(0.602) TCGA-VQ-A8E3-01 9 137619126 137619126 G T COL5A1 Missense_Mutation p.Q223H 0.24 probably_damaging(0.998) TCGA-VQ-A8E3-01 9 137726943 137726943 G A COL5A1 Missense_Mutation p.A1755T 0.41 unknown(0) TCGA-VQ-A8E3-01 9 139313278 139313278 A G PMPCA Splice_Site p.X370_splice 0.36 TCGA-VQ-A8E3-01 9 139617902 139617902 C A FAM69B Silent p.T324T 0.39 TCGA-VQ-A8E3-01 9 140059641 140059644 AGAA - GRIN1 Frame_Shift_Del p.K887Vfs*67 0.24 TCGA-VQ-A8E3-01 9 140128984 140128984 G T SLC34A3 Missense_Mutation p.G404W 0.19 deleterious(0) possibly_damaging(0.711) TCGA-VQ-A8E3-01 9 19446250 19446250 G A ACER2 Intron 0.26 TCGA-VQ-A8E3-01 9 2054608 2054608 G A SMARCA2 Missense_Mutation p.R353H 0.32 possibly_damaging(0.522) TCGA-VQ-A8E3-01 9 21227938 21227938 C T IFNA17 Missense_Mutation p.V79I 0.38 tolerated(0.05) benign(0.029) TCGA-VQ-A8E3-01 9 35547974 35547974 C - RUSC2 Frame_Shift_Del p.N488Tfs*31 0.24 TCGA-VQ-A8E3-01 9 37015151 37015151 C A PAX5 Nonsense_Mutation p.G85* 0.36 TCGA-VQ-A8E3-01 9 37428584 37428584 G A GRHPR Intron 0.39 TCGA-VQ-A8E3-01 9 37440938 37440938 G A ZBTB5 Silent p.R537R 0.29 TCGA-VQ-A8E3-01 9 4118412 4118412 C T GLIS3 Missense_Mutation p.G356S 0.26 tolerated(0.11) probably_damaging(0.999) TCGA-VQ-A8E3-01 9 4585601 4585601 C T SLC1A1 3'UTR 0.18 TCGA-VQ-A8E3-01 9 5968495 5968495 A T KIAA2026 Missense_Mutation p.I579N 0.20 deleterious(0.01) benign(0.226) TCGA-VQ-A8E3-01 9 72967275 72967275 T - SMC5 3'UTR 0.38 TCGA-VQ-A8E3-01 9 84608487 84608487 C T SPATA31D1 Silent p.S1034S 0.28 TCGA-VQ-A8E3-01 9 91628381 91628381 G A SHC3 Missense_Mutation p.P589L 0.26 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8E3-01 9 94486946 94486946 G A ROR2 Silent p.H610H 0.36 TCGA-VQ-A8E3-01 9 95274333 95274333 T - ECM2 Frame_Shift_Del p.N377Ifs*8 0.23 TCGA-VQ-A8E3-01 9 95280107 95280107 C T ECM2 Missense_Mutation p.V115M 0.11 deleterious(0.04) possibly_damaging(0.669) TCGA-VQ-A8E3-01 9 97221723 97221723 G A HIATL1 3'UTR 0.35 TCGA-VQ-A8E3-01 X 100242442 100242442 C T ARL13A Missense_Mutation p.R184C 0.48 deleterious(0.05) probably_damaging(0.996) TCGA-VQ-A8E3-01 X 102193020 102193020 G T RAB40AL Missense_Mutation p.K258N 0.48 tolerated_low_confidence(0.08) possibly_damaging(0.539) TCGA-VQ-A8E3-01 X 117796687 117796687 A T DOCK11 Missense_Mutation p.T1670S 0.66 tolerated(0.66) possibly_damaging(0.499) TCGA-VQ-A8E3-01 X 132161884 132161884 G A USP26 Missense_Mutation p.T122I 0.25 tolerated(0.15) benign(0.1) TCGA-VQ-A8E3-01 X 132730583 132730583 T A GPC3 Missense_Mutation p.K509N 0.53 tolerated(0.19) benign(0.005) TCGA-VQ-A8E3-01 X 16688707 16688707 A - CTPS2 Frame_Shift_Del p.L396Wfs*9 0.39 TCGA-VQ-A8E3-01 X 17819093 17819093 T C RAI2 Silent p.S346S 0.64 TCGA-VQ-A8E3-01 X 3235286 3235286 C T MXRA5 Missense_Mutation p.A2146T 0.75 deleterious(0.03) possibly_damaging(0.648) TCGA-VQ-A8E3-01 X 39923054 39923054 C A BCOR Missense_Mutation p.W1218C 0.56 deleterious(0) probably_damaging(0.947) TCGA-VQ-A8E3-01 X 51239256 51239256 T C NUDT11 Missense_Mutation p.E14G 0.36 deleterious(0.01) benign(0.239) TCGA-VQ-A8E3-01 X 55117823 55117823 T C PAGE2 Silent p.P84P 0.66 TCGA-VQ-A8E3-01 X 56590675 56590675 T C UBQLN2 Silent p.T123T 0.67 TCGA-VQ-A8E3-01 X 73041374 73041374 T A XIST RNA 0.67 TCGA-VQ-A8E3-01 X 73041375 73041375 C A XIST RNA 0.67 TCGA-VQ-A8E3-01 X 99662505 99662505 G - PCDH19 Frame_Shift_Del p.P364Rfs*4 0.33 TCGA-VQ-A8E7-01 10 102249884 102249884 C T SEC31B Missense_Mutation p.R949H 0.29 tolerated(0.3) benign(0.001) TCGA-VQ-A8E7-01 10 18292018 18292018 G T SLC39A12 Intron 0.43 TCGA-VQ-A8E7-01 10 30748197 30748197 C T MAP3K8 Missense_Mutation p.A347V 0.35 tolerated(0.19) possibly_damaging(0.863) TCGA-VQ-A8E7-01 10 7218091 7218091 G A SFMBT2 Silent p.I615I 0.28 TCGA-VQ-A8E7-01 10 94372845 94372845 G A KIF11 Silent p.T249T 0.20 TCGA-VQ-A8E7-01 11 123810613 123810613 G A OR4D5 Missense_Mutation p.C97Y 0.05 deleterious(0) probably_damaging(0.991) TCGA-VQ-A8E7-01 11 134131784 134131784 C T ACAD8 Silent p.A364A 0.53 TCGA-VQ-A8E7-01 11 20939762 20939762 C T NELL1 Missense_Mutation p.P213L 0.06 deleterious(0) probably_damaging(0.992) TCGA-VQ-A8E7-01 11 22399038 22399038 G T SLC17A6 Nonsense_Mutation p.E501* 0.72 TCGA-VQ-A8E7-01 11 59344377 59344377 G A OSBP Missense_Mutation p.R728C 0.41 tolerated(0.07) probably_damaging(0.912) TCGA-VQ-A8E7-01 11 640543 640543 C T DRD4 Silent p.Y400Y 0.44 TCGA-VQ-A8E7-01 11 9069635 9069635 G C SCUBE2 Missense_Mutation p.S550R 0.50 tolerated(0.52) benign(0.255) TCGA-VQ-A8E7-01 12 1006688 1006688 G A WNK1 Missense_Mutation p.E2097K 0.28 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8E7-01 12 113532693 113532693 C T DTX1 Missense_Mutation p.R443C 0.05 deleterious(0) probably_damaging(0.953) TCGA-VQ-A8E7-01 12 130184687 130184687 C A TMEM132D Missense_Mutation p.R212S 0.49 deleterious(0.01) probably_damaging(0.987) TCGA-VQ-A8E7-01 12 25148833 25148833 C T C12orf77 Silent p.T105T 0.37 TCGA-VQ-A8E7-01 12 32138853 32138853 T C KIAA1551 Missense_Mutation p.V1655A 0.30 tolerated(0.1) benign(0.097) TCGA-VQ-A8E7-01 12 66603948 66603948 G C IRAK3 Missense_Mutation p.D135H 0.23 deleterious(0.02) possibly_damaging(0.73) TCGA-VQ-A8E7-01 12 7982594 7982594 G C SLC2A14 Nonsense_Mutation p.S117* 0.33 TCGA-VQ-A8E7-01 12 9256946 9256946 G T A2M Missense_Mutation p.F385L 0.25 tolerated(0.68) benign(0.001) TCGA-VQ-A8E7-01 13 103446078 103446078 G A KDELC1 Missense_Mutation p.T156I 0.49 tolerated(0.16) benign(0.044) TCGA-VQ-A8E7-01 13 108861460 108861460 A T LIG4 Missense_Mutation p.D719E 0.16 deleterious(0) probably_damaging(0.93) TCGA-VQ-A8E7-01 13 21549198 21549198 G A LATS2 Silent p.T1026T 0.13 TCGA-VQ-A8E7-01 13 23929460 23929460 C A SACS Missense_Mutation p.D431Y 0.32 benign(0.281) TCGA-VQ-A8E7-01 14 103599782 103599782 C T TNFAIP2 Silent p.A543A 0.27 TCGA-VQ-A8E7-01 14 20344919 20344919 A C OR4K2 Missense_Mutation p.T165P 0.18 deleterious(0.01) possibly_damaging(0.555) TCGA-VQ-A8E7-01 14 21795819 21795819 C T RPGRIP1 Silent p.N916N 0.41 TCGA-VQ-A8E7-01 14 77605703 77605703 C T ZDHHC22 Missense_Mutation p.V127I 0.27 tolerated(1) benign(0.002) TCGA-VQ-A8E7-01 15 35082552 35082552 A G ACTC1 3'UTR 0.07 TCGA-VQ-A8E7-01 15 53082178 53082178 C T ONECUT1 5'UTR 0.45 TCGA-VQ-A8E7-01 15 64454344 64454345 - A PPIB Frame_Shift_Ins p.D49* 0.27 TCGA-VQ-A8E7-01 15 75969101 75969101 C T CSPG4 Missense_Mutation p.S1920N 0.43 tolerated(0.12) benign(0.168) TCGA-VQ-A8E7-01 15 83499506 83499506 G A WHAMM Silent p.S599S 0.37 TCGA-VQ-A8E7-01 15 89399479 89399479 C T ACAN Silent p.S1221S 0.71 TCGA-VQ-A8E7-01 16 2105506 2105506 C T TSC2 Silent p.I195I 0.31 TCGA-VQ-A8E7-01 16 3304457 3304457 C T MEFV Missense_Mutation p.R204H 0.35 tolerated(0.06) possibly_damaging(0.906) TCGA-VQ-A8E7-01 16 4935104 4935104 C T PPL Silent p.A1184A 0.29 TCGA-VQ-A8E7-01 16 65016025 65016025 T G CDH11 Missense_Mutation p.Q393H 0.30 tolerated(0.59) benign(0.185) TCGA-VQ-A8E7-01 16 89662906 89662906 G A CPNE7 Silent p.A593A 0.31 TCGA-VQ-A8E7-01 17 21730961 21730961 C A UBBP4 Missense_Mutation p.T88N 0.40 deleterious(0.02) possibly_damaging(0.669) TCGA-VQ-A8E7-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.56 deleterious(0) probably_damaging(1) TCGA-VQ-A8E7-01 17 78938109 78938109 G A RPTOR Silent p.S1329S 0.57 TCGA-VQ-A8E7-01 17 80401813 80401813 C T C17orf62 3'UTR 0.05 TCGA-VQ-A8E7-01 18 28906573 28906573 A T DSG1 Silent p.R26R 0.14 TCGA-VQ-A8E7-01 18 34320665 34320665 A G FHOD3 Missense_Mutation p.Q1033R 0.33 deleterious(0) benign(0.336) TCGA-VQ-A8E7-01 19 22363452 22363452 T G ZNF676 Missense_Mutation p.K356T 0.34 deleterious(0.01) possibly_damaging(0.721) TCGA-VQ-A8E7-01 19 22941102 22941102 A G ZNF99 Missense_Mutation p.Y537H 0.24 deleterious(0.02) probably_damaging(0.97) TCGA-VQ-A8E7-01 19 51499358 51499358 C T KLK8 Missense_Mutation p.R292H 0.33 tolerated(0.35) benign(0.016) TCGA-VQ-A8E7-01 19 52380605 52380605 C A ZNF577 Silent p.S71S 0.32 TCGA-VQ-A8E7-01 19 52519596 52519596 G A ZNF614 Nonsense_Mutation p.R419* 0.28 TCGA-VQ-A8E7-01 19 53344030 53344030 T C ZNF468 Missense_Mutation p.Q506R 0.04 tolerated(0.43) benign(0) TCGA-VQ-A8E7-01 19 56973711 56973711 G T ZNF667 Missense_Mutation p.S10Y 0.24 deleterious(0.01) benign(0.261) TCGA-VQ-A8E7-01 19 7184578 7184578 G T INSR Silent p.G241G 0.63 TCGA-VQ-A8E7-01 19 9008320 9008320 C G MUC16 Missense_Mutation p.G13078R 0.20 benign(0.244) TCGA-VQ-A8E7-01 19 9088475 9088475 T G MUC16 Missense_Mutation p.T1114P 0.25 unknown(0) TCGA-VQ-A8E7-01 1 11561543 11561543 C T PTCHD2 Missense_Mutation p.S165L 0.52 deleterious_low_confidence(0.02) benign(0.23) TCGA-VQ-A8E7-01 1 12919692 12919692 C T PRAMEF2 Silent p.H144H 0.02 TCGA-VQ-A8E7-01 1 13940884 13940884 C T PDPN Nonsense_Mutation p.R230* 0.29 TCGA-VQ-A8E7-01 1 1572130 1572130 C T CDK11B Missense_Mutation p.V614M 0.38 unknown(0) TCGA-VQ-A8E7-01 1 158614163 158614163 T A SPTA1 Missense_Mutation p.Q1406H 0.25 deleterious(0) possibly_damaging(0.87) TCGA-VQ-A8E7-01 1 165532959 165532959 G A LRRC52 Silent p.S280S 0.31 TCGA-VQ-A8E7-01 1 184567568 184567568 C T C1orf21 Silent p.F100F 0.42 TCGA-VQ-A8E7-01 1 196797271 196797271 T G CFHR1 Missense_Mutation p.S168A 0.61 tolerated(0.19) unknown(0) TCGA-VQ-A8E7-01 1 214170743 214170743 C G PROX1 Missense_Mutation p.Q289E 0.42 tolerated(1) benign(0.001) TCGA-VQ-A8E7-01 1 231954090 231954090 C T DISC1 Missense_Mutation p.T603M 0.34 deleterious(0.04) possibly_damaging(0.543) TCGA-VQ-A8E7-01 1 29475418 29475418 C A SRSF4 Missense_Mutation p.S330I 0.17 deleterious_low_confidence(0.03) unknown(0) TCGA-VQ-A8E7-01 1 29641898 29641898 G A PTPRU Missense_Mutation p.R1091H 0.39 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8E7-01 1 41012947 41012947 C A ZNF684 Missense_Mutation p.Q318K 0.32 tolerated(0.47) benign(0.241) TCGA-VQ-A8E7-01 1 45799135 45799135 G T MUTYH Missense_Mutation p.L97M 0.27 deleterious(0) probably_damaging(1) TCGA-VQ-A8E7-01 1 45799208 45799208 C T MUTYH Silent p.V72V 0.31 TCGA-VQ-A8E7-01 20 21690006 21690006 G A PAX1 Silent p.A402A 0.21 TCGA-VQ-A8E7-01 20 45224837 45224837 C T SLC13A3 Silent p.T251T 0.31 TCGA-VQ-A8E7-01 20 49620786 49620786 G T KCNG1 Missense_Mutation p.S444R 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A8E7-01 20 57767832 57767832 C T ZNF831 Silent p.D586D 0.41 TCGA-VQ-A8E7-01 20 60511941 60511941 C T CDH4 Silent p.N897N 0.28 TCGA-VQ-A8E7-01 20 61512754 61512754 G A DIDO1 Silent p.D1518D 0.37 TCGA-VQ-A8E7-01 20 61869319 61869319 C T BIRC7 Silent p.D138D 0.17 TCGA-VQ-A8E7-01 22 21998568 21998568 T G SDF2L1 3'UTR 0.50 TCGA-VQ-A8E7-01 22 31285580 31285580 T C OSBP2 Missense_Mutation p.M527T 0.67 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8E7-01 22 50869710 50869710 G A PPP6R2 Missense_Mutation p.G413R 0.07 tolerated(0.13) benign(0.049) TCGA-VQ-A8E7-01 2 113147766 113147766 G A RGPD8 Missense_Mutation p.A919V 0.23 tolerated(0.08) benign(0.119) TCGA-VQ-A8E7-01 2 159389814 159389814 T G PKP4 Missense_Mutation p.S40A 0.74 deleterious(0) benign(0.265) TCGA-VQ-A8E7-01 2 1668746 1668746 G T PXDN Silent p.I464I 0.61 TCGA-VQ-A8E7-01 2 212426722 212426722 A C ERBB4 Missense_Mutation p.L798R 0.70 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8E7-01 2 216964917 216964917 C T TMEM169 Silent p.Y182Y 0.53 TCGA-VQ-A8E7-01 2 223086085 223086085 C T PAX3 Missense_Mutation p.A272T 0.54 deleterious(0) possibly_damaging(0.628) TCGA-VQ-A8E7-01 2 31805766 31805766 C T SRD5A2 RNA 0.31 TCGA-VQ-A8E7-01 2 61712998 61712998 C T XPO1 Missense_Mutation p.A805T 0.67 tolerated(0.48) benign(0.368) TCGA-VQ-A8E7-01 2 70039831 70039831 A G ANXA4 Missense_Mutation p.Q175R 0.09 tolerated(0.25) benign(0.005) TCGA-VQ-A8E7-01 2 90193356 90193356 C A IGKV1D-13 Missense_Mutation p.L95I 0.63 deleterious(0) possibly_damaging(0.693) TCGA-VQ-A8E7-01 3 111368638 111368638 G T CD96 Missense_Mutation p.E581D 0.34 deleterious(0) probably_damaging(0.991) TCGA-VQ-A8E7-01 3 154055463 154055463 T G GPR149 3'UTR 0.34 TCGA-VQ-A8E7-01 3 16399520 16399520 G T RFTN1 Silent p.I355I 0.41 TCGA-VQ-A8E7-01 3 180324312 180324312 G T TTC14 Nonsense_Mutation p.E365* 0.25 TCGA-VQ-A8E7-01 3 185347673 185347673 C G SENP2 3'UTR 0.48 TCGA-VQ-A8E7-01 3 189586503 189586503 G A TP63 Missense_Mutation p.R376H 0.27 deleterious(0.03) benign(0) TCGA-VQ-A8E7-01 3 194080742 194080742 C T LRRC15 Missense_Mutation p.R350Q 0.34 tolerated(0.34) benign(0.005) TCGA-VQ-A8E7-01 4 128751797 128751797 A - HSPA4L Frame_Shift_Del p.R725Dfs*21 0.27 TCGA-VQ-A8E7-01 4 138451620 138451620 G A PCDH18 Silent p.I541I 0.15 TCGA-VQ-A8E7-01 4 186545154 186545154 C T SORBS2 Missense_Mutation p.V573M 0.28 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8E7-01 4 77033594 77033594 C A ART3 Silent p.G364G 0.31 TCGA-VQ-A8E7-01 5 140230065 140230065 C T PCDHA9 Missense_Mutation p.T662M 0.30 deleterious_low_confidence(0.03) probably_damaging(0.996) TCGA-VQ-A8E7-01 5 150945611 150945611 C T FAT2 Missense_Mutation p.R961Q 0.50 benign(0.015) TCGA-VQ-A8E7-01 5 152873616 152873616 A G GRIA1 Missense_Mutation p.T81A 0.25 deleterious(0.02) benign(0.212) TCGA-VQ-A8E7-01 5 169724611 169724611 G T LCP2 Missense_Mutation p.A2E 0.38 tolerated(0.19) probably_damaging(0.999) TCGA-VQ-A8E7-01 5 38427321 38427321 G A EGFLAM Missense_Mutation p.R674H 0.26 deleterious(0) probably_damaging(1) TCGA-VQ-A8E7-01 5 45396611 45396611 G A HCN1 Missense_Mutation p.R405W 0.30 deleterious(0) possibly_damaging(0.75) TCGA-VQ-A8E7-01 5 80604769 80604769 A G ZCCHC9 Silent p.E180E 0.06 TCGA-VQ-A8E7-01 6 165693553 165693553 C A C6orf118 Missense_Mutation p.R468I 0.28 tolerated_low_confidence(0.07) benign(0.02) TCGA-VQ-A8E7-01 6 33423047 33423047 G T ZBTB9 Missense_Mutation p.R57L 0.34 deleterious(0.01) possibly_damaging(0.678) TCGA-VQ-A8E7-01 6 38749121 38749121 G A DNAH8 Missense_Mutation p.R527Q 0.05 benign(0.206) TCGA-VQ-A8E7-01 6 42996954 42996954 G C RRP36 Missense_Mutation p.L256F 0.31 tolerated(0.45) possibly_damaging(0.736) TCGA-VQ-A8E7-01 6 44081807 44081807 C A MRPL14 Missense_Mutation p.D71Y 0.32 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8E7-01 6 76640859 76640859 G T IMPG1 Missense_Mutation p.A685E 0.30 tolerated(0.06) benign(0.23) TCGA-VQ-A8E7-01 7 107557304 107557304 G A DLD Missense_Mutation p.G314D 0.52 deleterious(0) probably_damaging(1) TCGA-VQ-A8E7-01 7 124493077 124493077 C T POT1 Missense_Mutation p.R273Q 0.35 deleterious(0) probably_damaging(0.985) TCGA-VQ-A8E7-01 7 147183119 147183119 C T CNTNAP2 Missense_Mutation p.A588V 0.30 deleterious(0.01) benign(0.171) TCGA-VQ-A8E7-01 7 22184668 22184668 G A RAPGEF5 Missense_Mutation p.A574V 0.15 deleterious(0) probably_damaging(0.976) TCGA-VQ-A8E7-01 7 5348865 5348865 G T TNRC18 Silent p.I2841I 0.36 TCGA-VQ-A8E7-01 7 751068 751068 G A PRKAR1B Silent p.H25H 0.30 TCGA-VQ-A8E7-01 7 87150159 87150159 C T ABCB1 Missense_Mutation p.V907I 0.46 tolerated(0.26) possibly_damaging(0.481) TCGA-VQ-A8E7-01 7 87329803 87329803 G A RUNDC3B Missense_Mutation p.R119Q 0.46 deleterious(0.05) possibly_damaging(0.464) TCGA-VQ-A8E7-01 7 99722151 99722151 G C CNPY4 Missense_Mutation p.L160F 0.07 deleterious(0.01) probably_damaging(0.995) TCGA-VQ-A8E7-01 8 120429036 120429036 C A NOV Missense_Mutation p.T46K 0.56 tolerated(0.19) benign(0.005) TCGA-VQ-A8E7-01 8 121644792 121644792 G A SNTB1 Silent p.N296N 0.34 TCGA-VQ-A8E7-01 8 140630431 140630431 C T KCNK9 3'UTR 0.19 TCGA-VQ-A8E7-01 8 145584501 145584501 C T SLC52A2 Silent p.Y388Y 0.18 TCGA-VQ-A8E7-01 8 87081687 87081687 G A PSKH2 Silent p.F55F 0.32 TCGA-VQ-A8E7-01 9 109689159 109689159 C T ZNF462 Missense_Mutation p.A989V 0.24 benign(0.016) TCGA-VQ-A8E7-01 9 113221368 113221368 C T SVEP1 Silent p.S1116S 0.17 TCGA-VQ-A8E7-01 9 119858381 119858381 G A ASTN2 Silent p.D355D 0.21 TCGA-VQ-A8E7-01 9 136313847 136313847 T C ADAMTS13 Silent p.A953A 0.31 TCGA-VQ-A8E7-01 9 139872102 139872102 G A PTGDS Silent p.P24P 0.30 TCGA-VQ-A8E7-01 9 32631151 32631151 G A TAF1L Missense_Mutation p.A1476V 0.33 tolerated(0.29) benign(0.109) TCGA-VQ-A8E7-01 9 91996136 91996136 C T SEMA4D Silent p.P524P 0.36 TCGA-VQ-A8E7-01 9 97321300 97321300 G A FBP2 Nonsense_Mutation p.R314* 0.46 TCGA-VQ-A8E7-01 X 112054577 112054577 G A AMOT Silent p.L479L 0.71 TCGA-VQ-A8E7-01 X 137717629 137717629 T G FGF13 Missense_Mutation p.K207T 0.16 deleterious(0) probably_damaging(0.926) TCGA-VQ-A8E7-01 X 15607559 15607559 A G ACE2 Missense_Mutation p.Y202H 0.70 deleterious(0.01) probably_damaging(0.977) TCGA-VQ-A8E7-01 X 48053630 48053630 C T SSX5 Missense_Mutation p.R113H 0.57 tolerated(0.57) benign(0.002) TCGA-VQ-A8E7-01 X 79286316 79286316 C T TBX22 Silent p.S423S 0.69 TCGA-VQ-A8E7-01 X 92928388 92928388 C T NAP1L3 5'UTR 0.60 TCGA-VQ-A8P2-01 10 100017802 100017802 G A LOXL4 Silent p.V347V 0.35 TCGA-VQ-A8P2-01 10 100167718 100167718 C T PYROXD2 Missense_Mutation p.V62I 0.41 deleterious(0.01) possibly_damaging(0.573) TCGA-VQ-A8P2-01 10 100219423 100219423 G A HPSE2 Missense_Mutation p.L563F 0.29 deleterious(0.02) probably_damaging(0.959) TCGA-VQ-A8P2-01 10 101507118 101507118 C A CUTC Missense_Mutation p.L182I 0.13 tolerated(0.53) benign(0.268) TCGA-VQ-A8P2-01 10 101591389 101591389 G T ABCC2 Nonsense_Mutation p.E969* 0.35 TCGA-VQ-A8P2-01 10 101591495 101591495 C T ABCC2 Missense_Mutation p.T1004I 0.35 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 10 101648628 101648628 A G DNMBP Missense_Mutation p.F1080S 0.35 tolerated(0.06) probably_damaging(0.998) TCGA-VQ-A8P2-01 10 101835809 101835809 G A CPN1 Silent p.R93R 0.49 TCGA-VQ-A8P2-01 10 101841303 101841303 C T CPN1 Missense_Mutation p.R27H 0.31 tolerated(0.16) benign(0.007) TCGA-VQ-A8P2-01 10 101964840 101964840 C T CHUK Missense_Mutation p.A450T 0.40 deleterious(0.04) benign(0.417) TCGA-VQ-A8P2-01 10 102050233 102050233 A G PKD2L1 Missense_Mutation p.V684A 0.41 tolerated(0.81) benign(0.001) TCGA-VQ-A8P2-01 10 102257887 102257887 G A SEC31B Missense_Mutation p.R588C 0.38 deleterious(0.02) benign(0.41) TCGA-VQ-A8P2-01 10 102683946 102683946 G A FAM178A Silent p.P396P 0.38 TCGA-VQ-A8P2-01 10 102743285 102743285 C T SEMA4G Silent p.G643G 0.20 TCGA-VQ-A8P2-01 10 103310647 103310647 A G BTRC Intron 0.38 TCGA-VQ-A8P2-01 10 103572883 103572883 G T MGEA5 Missense_Mutation p.L85I 0.49 tolerated(0.09) benign(0.403) TCGA-VQ-A8P2-01 10 103607187 103607187 C T C10orf76 3'UTR 0.30 TCGA-VQ-A8P2-01 10 103793068 103793068 C T C10orf76 Missense_Mutation p.R44Q 0.33 tolerated(0.35) benign(0.034) TCGA-VQ-A8P2-01 10 103827537 103827538 - T HPS6 Frame_Shift_Ins p.T770Dfs*42 0.25 TCGA-VQ-A8P2-01 10 104157359 104157359 G A NFKB2 Missense_Mutation p.R193H 0.39 deleterious(0.04) probably_damaging(0.934) TCGA-VQ-A8P2-01 10 104171471 104171471 G A PSD Silent p.S645S 0.25 TCGA-VQ-A8P2-01 10 104176716 104176716 G A PSD Missense_Mutation p.P27L 0.35 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-VQ-A8P2-01 10 104386970 104386970 G T SUFU Missense_Mutation p.E445D 0.37 tolerated(0.4) benign(0.004) TCGA-VQ-A8P2-01 10 104416676 104416676 C T TRIM8 Silent p.S407S 0.34 TCGA-VQ-A8P2-01 10 104592322 104592322 C T CYP17A1 Missense_Mutation p.R362H 0.35 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 10 104596913 104596913 C A CYP17A1 Missense_Mutation p.G69V 0.35 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 10 104835891 104835891 C A CNNM2 Missense_Mutation p.S761Y 0.21 deleterious(0) benign(0.284) TCGA-VQ-A8P2-01 10 104857106 104857106 C T NT5C2 Missense_Mutation p.R238Q 0.31 tolerated(0.15) benign(0.059) TCGA-VQ-A8P2-01 10 105093694 105093694 C T PCGF6 Silent p.T266T 0.73 TCGA-VQ-A8P2-01 10 105218192 105218192 C T CALHM1 Missense_Mutation p.R106H 0.12 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 10 105218286 105218286 C T CALHM1 Missense_Mutation p.V75M 0.21 tolerated(0.06) possibly_damaging(0.8) TCGA-VQ-A8P2-01 10 105363469 105363469 G A SH3PXD2A Silent p.I474I 0.09 TCGA-VQ-A8P2-01 10 105891231 105891231 C A WDR96 Missense_Mutation p.K1563N 0.35 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8P2-01 10 106025859 106025859 G T GSTO1 Missense_Mutation p.K161N 0.08 tolerated(0.52) benign(0.004) TCGA-VQ-A8P2-01 10 106037860 106037860 G A GSTO2 Missense_Mutation p.E118K 0.51 deleterious(0) possibly_damaging(0.741) TCGA-VQ-A8P2-01 10 106059019 106059019 G A GSTO2 Missense_Mutation p.A237T 0.19 deleterious(0.02) benign(0.446) TCGA-VQ-A8P2-01 10 106125756 106125756 A G CCDC147 Missense_Mutation p.K261R 0.20 tolerated(0.42) benign(0.075) TCGA-VQ-A8P2-01 10 106209934 106209934 G A CCDC147 Missense_Mutation p.A828T 0.39 tolerated(0.42) benign(0.005) TCGA-VQ-A8P2-01 10 106918664 106918664 A G SORCS3 Silent p.L548L 0.08 TCGA-VQ-A8P2-01 10 106974208 106974208 G A SORCS3 Missense_Mutation p.R795Q 0.33 deleterious(0) benign(0.312) TCGA-VQ-A8P2-01 10 108336956 108336957 - T SORCS1 3'Flank 0.37 TCGA-VQ-A8P2-01 10 108466376 108466376 C T SORCS1 Missense_Mutation p.R387Q 0.22 tolerated(0.2) possibly_damaging(0.627) TCGA-VQ-A8P2-01 10 108923885 108923885 C A SORCS1 Missense_Mutation p.D134Y 0.33 deleterious(0.04) benign(0.381) TCGA-VQ-A8P2-01 10 111667502 111667502 A G XPNPEP1 Missense_Mutation p.Y65H 0.35 tolerated(0.24) benign(0.002) TCGA-VQ-A8P2-01 10 111878385 111878385 G A ADD3 Missense_Mutation p.S203N 0.40 deleterious(0.05) possibly_damaging(0.678) TCGA-VQ-A8P2-01 10 111893088 111893088 C T ADD3 Silent p.N611N 0.42 TCGA-VQ-A8P2-01 10 112724264 112724264 G A SHOC2 Missense_Mutation p.A50T 0.27 tolerated(0.57) benign(0.001) TCGA-VQ-A8P2-01 10 112838881 112838881 G A ADRA2A Missense_Mutation p.R376H 0.45 deleterious(0.02) possibly_damaging(0.482) TCGA-VQ-A8P2-01 10 113941553 113941553 G A GPAM 5'UTR 0.52 TCGA-VQ-A8P2-01 10 114168214 114168214 C T ACSL5 Missense_Mutation p.S212F 0.07 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 10 11505019 11505019 G A USP6NL Silent p.P653P 0.38 TCGA-VQ-A8P2-01 10 115366041 115366041 G A NRAP Missense_Mutation p.R1235C 0.54 deleterious(0.03) probably_damaging(1) TCGA-VQ-A8P2-01 10 115481532 115481532 A - CASP7 Frame_Shift_Del p.A159Lfs*17 0.29 TCGA-VQ-A8P2-01 10 115962036 115962036 G A TDRD1 Silent p.K225K 0.35 TCGA-VQ-A8P2-01 10 115971775 115971775 C T TDRD1 Missense_Mutation p.A604V 0.09 deleterious(0) possibly_damaging(0.866) TCGA-VQ-A8P2-01 10 116060389 116060389 G A AFAP1L2 Nonsense_Mutation p.R535* 0.42 TCGA-VQ-A8P2-01 10 117704181 117704181 C T ATRNL1 Missense_Mutation p.A1344V 0.39 deleterious(0) probably_damaging(0.936) TCGA-VQ-A8P2-01 10 117823895 117823895 T - GFRA1 3'UTR 0.29 TCGA-VQ-A8P2-01 10 117849372 117849372 T C GFRA1 Silent p.P359P 0.44 TCGA-VQ-A8P2-01 10 118100261 118100262 - A CCDC172 Frame_Shift_Ins p.S63Ifs*11 0.24 TCGA-VQ-A8P2-01 10 118891803 118891804 - T VAX1 3'Flank 0.28 TCGA-VQ-A8P2-01 10 119013924 119013924 A G SLC18A2 Missense_Mutation p.M206V 0.37 deleterious(0.01) benign(0.013) TCGA-VQ-A8P2-01 10 119100538 119100538 C T PDZD8 Nonsense_Mutation p.W316* 0.52 TCGA-VQ-A8P2-01 10 11911485 11911485 C T PROSER2 Intron 0.55 TCGA-VQ-A8P2-01 10 120818780 120818780 C A EIF3A Missense_Mutation p.A525S 0.33 tolerated(0.66) unknown(0) TCGA-VQ-A8P2-01 10 120871388 120871388 G A FAM45A Missense_Mutation p.A94T 0.34 tolerated(0.42) benign(0.07) TCGA-VQ-A8P2-01 10 121336661 121336661 C T TIAL1 Silent p.T281T 0.44 TCGA-VQ-A8P2-01 10 121411253 121411254 - C BAG3 Frame_Shift_Ins p.G25Rfs*33 0.28 TCGA-VQ-A8P2-01 10 121551386 121551386 G T INPP5F Missense_Mutation p.K150N 0.32 deleterious(0.01) possibly_damaging(0.805) TCGA-VQ-A8P2-01 10 121582627 121582627 C T INPP5F Nonsense_Mutation p.R693* 0.30 TCGA-VQ-A8P2-01 10 121602933 121602933 G A MCMBP Missense_Mutation p.A278V 0.20 tolerated(0.31) benign(0.003) TCGA-VQ-A8P2-01 10 123659482 123659482 T C ATE1 Intron 0.10 TCGA-VQ-A8P2-01 10 123845555 123845555 C A TACC2 Silent p.S1180S 0.31 TCGA-VQ-A8P2-01 10 124249011 124249011 G A HTRA1 Missense_Mutation p.V216M 0.42 deleterious(0) probably_damaging(0.985) TCGA-VQ-A8P2-01 10 124249119 124249119 G A HTRA1 Missense_Mutation p.A252T 0.22 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 10 125426388 125426388 G A GPR26 Silent p.S155S 0.36 TCGA-VQ-A8P2-01 10 125557608 125557608 A G CPXM2 Missense_Mutation p.V258A 0.35 deleterious(0.01) possibly_damaging(0.867) TCGA-VQ-A8P2-01 10 125769712 125769712 G A CHST15 Silent p.L547L 0.09 TCGA-VQ-A8P2-01 10 126086501 126086501 C T OAT 3'UTR 0.44 TCGA-VQ-A8P2-01 10 126089457 126089457 C T OAT Missense_Mutation p.V371I 0.35 tolerated(0.11) possibly_damaging(0.475) TCGA-VQ-A8P2-01 10 126097428 126097428 C T OAT Silent p.K102K 0.46 TCGA-VQ-A8P2-01 10 127414299 127414299 G A EDRF1 Silent p.Q228Q 0.18 TCGA-VQ-A8P2-01 10 127455418 127455418 G A MMP21 Missense_Mutation p.S508F 0.12 deleterious(0) possibly_damaging(0.786) TCGA-VQ-A8P2-01 10 127520163 127520163 T C BCCIP Missense_Mutation p.Y196H 0.42 tolerated(0.77) benign(0.014) TCGA-VQ-A8P2-01 10 127541821 127541821 G A BCCIP 3'UTR 0.28 TCGA-VQ-A8P2-01 10 127708313 127708313 C T ADAM12 Missense_Mutation p.A874T 0.16 tolerated(0.6) benign(0.003) TCGA-VQ-A8P2-01 10 127755291 127755291 A C ADAM12 Missense_Mutation p.C473G 0.20 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 10 128192602 128192602 G A C10orf90 Silent p.D389D 0.41 TCGA-VQ-A8P2-01 10 128974387 128974387 G A FAM196A Silent p.P91P 0.31 TCGA-VQ-A8P2-01 10 129347615 129347615 G T NPS 5'UTR 0.15 TCGA-VQ-A8P2-01 10 129536846 129536846 C T FOXI2 Nonsense_Mutation p.R192* 0.38 TCGA-VQ-A8P2-01 10 129900945 129900945 C A MKI67 Missense_Mutation p.R3053S 0.11 deleterious(0.01) benign(0.242) TCGA-VQ-A8P2-01 10 131958311 131958311 T C GLRX3 Missense_Mutation p.V85A 0.27 tolerated(0.06) possibly_damaging(0.536) TCGA-VQ-A8P2-01 10 131973322 131973322 G A GLRX3 Missense_Mutation p.G309E 0.40 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 10 13246300 13246300 T - MCM10 Frame_Shift_Del p.F814Sfs*34 0.29 TCGA-VQ-A8P2-01 10 133787389 133787389 C T BNIP3 Silent p.S35S 0.35 TCGA-VQ-A8P2-01 10 134017298 134017298 G - DPYSL4 Frame_Shift_Del p.Y499Mfs*8 0.27 TCGA-VQ-A8P2-01 10 134218925 134218925 C T PWWP2B Silent p.C307C 0.35 TCGA-VQ-A8P2-01 10 134942148 134942148 C T GPR123 Silent p.F272F 0.23 TCGA-VQ-A8P2-01 10 134981759 134981759 C T KNDC1 Silent p.D101D 0.09 TCGA-VQ-A8P2-01 10 135025034 135025034 C T KNDC1 Silent p.S1339S 0.31 TCGA-VQ-A8P2-01 10 135165965 135165965 C - PRAP1 3'UTR 0.15 TCGA-VQ-A8P2-01 10 135179531 135179531 C T ECHS1 Missense_Mutation p.A230T 0.34 deleterious(0) probably_damaging(0.947) TCGA-VQ-A8P2-01 10 135193508 135193508 G A PAOX Missense_Mutation p.V63M 0.28 tolerated(0.11) benign(0.33) TCGA-VQ-A8P2-01 10 135204869 135204869 G A RP11-108K14.8 Missense_Mutation p.A22T 0.49 tolerated_low_confidence(0.08) benign(0.011) TCGA-VQ-A8P2-01 10 135204902 135204902 C T RP11-108K14.8 Nonsense_Mutation p.R33* 0.38 TCGA-VQ-A8P2-01 10 135209235 135209235 G A RP11-108K14.8 Missense_Mutation p.S49N 0.19 tolerated(0.22) benign(0.009) TCGA-VQ-A8P2-01 10 13824941 13824941 G A FRMD4A Missense_Mutation p.A122V 0.39 tolerated(0.06) probably_damaging(0.948) TCGA-VQ-A8P2-01 10 1405265 1405265 G A ADARB2 Silent p.P345P 0.38 TCGA-VQ-A8P2-01 10 15121003 15121003 G A ACBD7 Silent p.L17L 0.15 TCGA-VQ-A8P2-01 10 15145638 15145638 G A RPP38 Missense_Mutation p.V109I 0.11 tolerated(1) benign(0.024) TCGA-VQ-A8P2-01 10 15146010 15146010 G A RPP38 Missense_Mutation p.D233N 0.10 tolerated(0.12) benign(0.443) TCGA-VQ-A8P2-01 10 15255001 15255001 G A FAM171A1 Silent p.D862D 0.34 TCGA-VQ-A8P2-01 10 15256159 15256159 G A FAM171A1 Silent p.G476G 0.23 TCGA-VQ-A8P2-01 10 15761561 15761561 C T ITGA8 Splice_Site p.X70_splice 0.50 TCGA-VQ-A8P2-01 10 17369081 17369081 G A ST8SIA6 Silent p.V189V 0.32 TCGA-VQ-A8P2-01 10 1779398 1779398 G A ADARB2 5'UTR 0.30 TCGA-VQ-A8P2-01 10 18807271 18807271 C T CACNB2 Missense_Mutation p.H271Y 0.31 deleterious(0.04) probably_damaging(0.977) TCGA-VQ-A8P2-01 10 18828133 18828133 G A CACNB2 Intron 0.33 TCGA-VQ-A8P2-01 10 21903801 21903801 G T MLLT10 Missense_Mutation p.G184V 0.41 deleterious(0.04) probably_damaging(0.992) TCGA-VQ-A8P2-01 10 22617091 22617091 G A BMI1 Missense_Mutation p.E152K 0.23 tolerated(0.29) benign(0.001) TCGA-VQ-A8P2-01 10 23295908 23295908 C T ARMC3 Silent p.Y609Y 0.39 TCGA-VQ-A8P2-01 10 23326238 23326238 C T ARMC3 Missense_Mutation p.R817C 0.29 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 10 23326461 23326461 C A ARMC3 3'UTR 0.45 TCGA-VQ-A8P2-01 10 24813417 24813417 G A KIAA1217 Silent p.S874S 0.36 TCGA-VQ-A8P2-01 10 24832905 24832905 C T KIAA1217 Missense_Mutation p.P1569L 0.31 tolerated(0.1) benign(0.217) TCGA-VQ-A8P2-01 10 25312243 25312243 C T THNSL1 Nonsense_Mutation p.R31* 0.34 TCGA-VQ-A8P2-01 10 25887375 25887375 G T GPR158 Missense_Mutation p.E940D 0.39 tolerated(0.23) possibly_damaging(0.758) TCGA-VQ-A8P2-01 10 26455096 26455096 G A MYO3A Missense_Mutation p.G1034R 0.15 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 10 26505723 26505723 C T GAD2 5'UTR 0.18 TCGA-VQ-A8P2-01 10 26558061 26558061 C T GAD2 Missense_Mutation p.P312S 0.50 deleterious(0.02) probably_damaging(0.998) TCGA-VQ-A8P2-01 10 26800676 26800676 C A APBB1IP Missense_Mutation p.L178I 0.35 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 10 27048066 27048066 G A ABI1 Nonsense_Mutation p.R335* 0.35 TCGA-VQ-A8P2-01 10 27459012 27459012 G A MASTL Missense_Mutation p.S375N 0.43 tolerated(0.5) benign(0.018) TCGA-VQ-A8P2-01 10 27537244 27537244 T C RP11-85G18.6 Intron 0.32 TCGA-VQ-A8P2-01 10 27537468 27537468 G C RP11-85G18.6 Intron 0.26 TCGA-VQ-A8P2-01 10 27537651 27537651 T C RP11-85G18.6 Intron 0.33 TCGA-VQ-A8P2-01 10 27702139 27702139 G A PTCHD3 Silent p.L347L 0.42 TCGA-VQ-A8P2-01 10 27702997 27702997 C T PTCHD3 Silent p.A61A 0.33 TCGA-VQ-A8P2-01 10 28224176 28224176 C T ARMC4 Missense_Mutation p.R753Q 0.31 tolerated(1) benign(0.044) TCGA-VQ-A8P2-01 10 28273945 28273945 C T ARMC4 Intron 0.40 TCGA-VQ-A8P2-01 10 28345528 28345528 C A MPP7 Nonsense_Mutation p.E478* 0.31 TCGA-VQ-A8P2-01 10 28971306 28971306 G A BAMBI Silent p.G253G 0.28 TCGA-VQ-A8P2-01 10 294489 294489 C T ZMYND11 Missense_Mutation p.R481W 0.57 deleterious(0.01) possibly_damaging(0.776) TCGA-VQ-A8P2-01 10 29821715 29821715 G A SVIL Silent p.D527D 0.31 TCGA-VQ-A8P2-01 10 30315844 30315844 G - KIAA1462 Frame_Shift_Del p.P1078Qfs*83 0.28 TCGA-VQ-A8P2-01 10 30316682 30316682 G A KIAA1462 Missense_Mutation p.R799W 0.45 deleterious(0.02) possibly_damaging(0.888) TCGA-VQ-A8P2-01 10 30625906 30625906 C A MTPAP Missense_Mutation p.E202D 0.12 deleterious(0.01) probably_damaging(0.986) TCGA-VQ-A8P2-01 10 30736815 30736815 C T MAP3K8 Silent p.G147G 0.36 TCGA-VQ-A8P2-01 10 30739258 30739258 G A MAP3K8 Silent p.E192E 0.35 TCGA-VQ-A8P2-01 10 31137917 31137917 A G ZNF438 Missense_Mutation p.S473P 0.39 tolerated(0.16) benign(0.004) TCGA-VQ-A8P2-01 10 3155699 3155699 G A PFKP Missense_Mutation p.A454T 0.43 tolerated(0.09) benign(0.351) TCGA-VQ-A8P2-01 10 31810511 31810511 T C ZEB1 Missense_Mutation p.S751P 0.33 tolerated(0.41) benign(0.005) TCGA-VQ-A8P2-01 10 3197796 3197796 C T PITRM1 Silent p.Q536Q 0.47 TCGA-VQ-A8P2-01 10 32097970 32097970 C A ARHGAP12 Nonsense_Mutation p.E739* 0.49 TCGA-VQ-A8P2-01 10 32197424 32197424 C T ARHGAP12 Silent p.S120S 0.17 TCGA-VQ-A8P2-01 10 32311965 32311965 C T KIF5B Splice_Site p.X576_splice 0.45 TCGA-VQ-A8P2-01 10 32560483 32560483 T C EPC1 Missense_Mutation p.R813G 0.40 deleterious(0.02) probably_damaging(0.977) TCGA-VQ-A8P2-01 10 32581987 32581987 G A EPC1 Nonsense_Mutation p.R199* 0.15 TCGA-VQ-A8P2-01 10 32761409 32761409 G T CCDC7 Missense_Mutation p.M226I 0.27 tolerated(0.22) benign(0.006) TCGA-VQ-A8P2-01 10 33018277 33018277 A - C10ORF68 Frame_Shift_Del p.K242Rfs*30 0.39 TCGA-VQ-A8P2-01 10 33502318 33502318 G A NRP1 Missense_Mutation p.A537V 0.33 tolerated(0.16) benign(0.006) TCGA-VQ-A8P2-01 10 33515119 33515119 G A NRP1 Silent p.I360I 0.48 TCGA-VQ-A8P2-01 10 33545349 33545349 G A NRP1 Nonsense_Mutation p.R237* 0.11 TCGA-VQ-A8P2-01 10 34673075 34673075 C T PARD3 Missense_Mutation p.R333Q 0.39 tolerated(0.13) probably_damaging(0.98) TCGA-VQ-A8P2-01 10 35928713 35928713 C T FZD8 Missense_Mutation p.A549T 0.44 deleterious(0) probably_damaging(0.932) TCGA-VQ-A8P2-01 10 35929177 35929177 G A FZD8 Missense_Mutation p.A394V 0.18 tolerated(0.07) probably_damaging(0.995) TCGA-VQ-A8P2-01 10 38241877 38241877 A G ZNF25 Silent p.F183F 0.38 TCGA-VQ-A8P2-01 10 38241907 38241907 G T ZNF25 Silent p.T173T 0.36 TCGA-VQ-A8P2-01 10 38301228 38301228 G A ZNF33A Intron 0.08 TCGA-VQ-A8P2-01 10 38344205 38344205 T C ZNF33A Missense_Mutation p.F385L 0.36 deleterious(0.01) benign(0.209) TCGA-VQ-A8P2-01 10 43015517 43015517 C T ZNF37BP RNA 0.56 TCGA-VQ-A8P2-01 10 43018695 43018695 C A ZNF37BP RNA 0.16 TCGA-VQ-A8P2-01 10 43326351 43326351 G A BMS1 Missense_Mutation p.S1219N 0.35 tolerated(0.94) benign(0.001) TCGA-VQ-A8P2-01 10 43326424 43326424 G A BMS1 Silent p.E1243E 0.24 TCGA-VQ-A8P2-01 10 436261 436261 C T DIP2C Silent p.P479P 0.35 TCGA-VQ-A8P2-01 10 43971216 43971216 G T ZNF487 5'UTR 0.30 TCGA-VQ-A8P2-01 10 44112043 44112043 G A ZNF485 Silent p.Q184Q 0.42 TCGA-VQ-A8P2-01 10 45473351 45473351 G A C10orf10 Missense_Mutation p.S43F 0.41 deleterious(0) probably_damaging(0.919) TCGA-VQ-A8P2-01 10 45498978 45498978 C T ZNF22 Silent p.P54P 0.29 TCGA-VQ-A8P2-01 10 45499494 45499494 A G ZNF22 3'UTR 0.34 TCGA-VQ-A8P2-01 10 45799212 45799212 G A OR13A1 Missense_Mutation p.A220V 0.26 deleterious(0.02) probably_damaging(0.96) TCGA-VQ-A8P2-01 10 45959710 45959710 C T MARCH8 Silent p.T73T 0.31 TCGA-VQ-A8P2-01 10 46248154 46248154 G A FAM21C Silent p.E374E 0.25 TCGA-VQ-A8P2-01 10 46280332 46280332 G A FAM21C Missense_Mutation p.A891T 0.12 tolerated(0.06) benign(0.297) TCGA-VQ-A8P2-01 10 46282520 46282520 C T FAM21C Missense_Mutation p.T950I 0.44 deleterious(0.01) benign(0.046) TCGA-VQ-A8P2-01 10 465116 465116 C T DIP2C Missense_Mutation p.V210I 0.41 tolerated(0.16) probably_damaging(0.959) TCGA-VQ-A8P2-01 10 48413852 48413852 A G GDF2 Missense_Mutation p.I339T 0.38 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 10 48428800 48428800 C T GDF10 Missense_Mutation p.M362I 0.11 deleterious(0) probably_damaging(0.985) TCGA-VQ-A8P2-01 10 48429190 48429190 C A GDF10 Silent p.P232P 0.56 TCGA-VQ-A8P2-01 10 48429496 48429496 C T GDF10 Silent p.T130T 0.45 TCGA-VQ-A8P2-01 10 50315661 50315661 G A VSTM4 Silent p.G145G 0.47 TCGA-VQ-A8P2-01 10 50678669 50678669 C T ERCC6 Missense_Mutation p.A1113T 0.35 tolerated(0.36) benign(0.002) TCGA-VQ-A8P2-01 10 50680495 50680495 T A ERCC6 Missense_Mutation p.I951L 0.47 deleterious(0) possibly_damaging(0.78) TCGA-VQ-A8P2-01 10 50682094 50682094 C T ERCC6 Silent p.L859L 0.45 TCGA-VQ-A8P2-01 10 50820417 50820417 G A SLC18A3 3'UTR 0.43 TCGA-VQ-A8P2-01 10 50863168 50863168 C T CHAT Silent p.Y554Y 0.32 TCGA-VQ-A8P2-01 10 51769759 51769759 G A AGAP6 Missense_Mutation p.C625Y 0.09 tolerated(0.47) benign(0.05) TCGA-VQ-A8P2-01 10 51808077 51808077 C T RP11-324H6.5 RNA 0.35 TCGA-VQ-A8P2-01 10 52067791 52067791 T C SGMS1 Missense_Mutation p.Y338C 0.26 deleterious(0) probably_damaging(0.967) TCGA-VQ-A8P2-01 10 52390591 52390591 C T RP11-50E11.3 RNA 0.59 TCGA-VQ-A8P2-01 10 53227537 53227537 G T PRKG1 Missense_Mutation p.G178V 0.45 deleterious(0.03) probably_damaging(0.978) TCGA-VQ-A8P2-01 10 53459044 53459044 A G CSTF2T Missense_Mutation p.V89A 0.42 deleterious(0) probably_damaging(0.964) TCGA-VQ-A8P2-01 10 54074197 54074197 G T DKK1 Translation_Start_Site p.M1? 0.40 deleterious_low_confidence(0.03) benign(0.138) TCGA-VQ-A8P2-01 10 5435860 5435860 C T TUBAL3 Missense_Mutation p.A321T 0.39 deleterious_low_confidence(0) possibly_damaging(0.897) TCGA-VQ-A8P2-01 10 5436178 5436178 C T TUBAL3 Missense_Mutation p.A215T 0.31 deleterious_low_confidence(0) probably_damaging(1) TCGA-VQ-A8P2-01 10 5541187 5541187 G A CALML5 Missense_Mutation p.A72V 0.55 tolerated(0.19) benign(0.021) TCGA-VQ-A8P2-01 10 5790991 5790991 G A FAM208B Silent p.S1869S 0.33 TCGA-VQ-A8P2-01 10 5810302 5810302 C A GDI2 Missense_Mutation p.D289Y 0.39 deleterious(0) possibly_damaging(0.711) TCGA-VQ-A8P2-01 10 5926004 5926004 G A ANKRD16 Silent p.G205G 0.45 TCGA-VQ-A8P2-01 10 59956172 59956172 T - IPMK Frame_Shift_Del p.I306* 0.32 TCGA-VQ-A8P2-01 10 6002454 6002454 C T IL15RA Missense_Mutation p.M153I 0.40 tolerated(0.14) benign(0.017) TCGA-VQ-A8P2-01 10 6008218 6008218 A C IL15RA Missense_Mutation p.I58S 0.44 deleterious(0) benign(0.283) TCGA-VQ-A8P2-01 10 6063624 6063624 C T IL2RA Missense_Mutation p.E134K 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A8P2-01 10 61023856 61023856 T G FAM13C Missense_Mutation p.K338T 0.36 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 10 61815515 61815515 C T ANK3 Silent p.V4322V 0.06 TCGA-VQ-A8P2-01 10 61828874 61828874 T A ANK3 Missense_Mutation p.N3922I 0.36 benign(0.043) TCGA-VQ-A8P2-01 10 61834307 61834307 G A ANK3 Missense_Mutation p.S2111F 0.32 probably_damaging(0.979) TCGA-VQ-A8P2-01 10 61840331 61840331 G A ANK3 Missense_Mutation p.R1466C 0.27 probably_damaging(0.91) TCGA-VQ-A8P2-01 10 61847919 61847919 G A ANK3 Nonsense_Mutation p.R1176* 0.39 TCGA-VQ-A8P2-01 10 61898734 61898734 G A ANK3 Missense_Mutation p.A909V 0.38 possibly_damaging(0.702) TCGA-VQ-A8P2-01 10 62553742 62553743 - A CDK1 3'UTR 0.29 TCGA-VQ-A8P2-01 10 6261552 6261552 G A PFKFB3 Silent p.P173P 0.37 TCGA-VQ-A8P2-01 10 6263490 6263490 G A PFKFB3 Silent p.A326A 0.39 TCGA-VQ-A8P2-01 10 62648730 62648730 G T RHOBTB1 Silent p.P232P 0.08 TCGA-VQ-A8P2-01 10 63810738 63810738 C T ARID5B Silent p.S275S 0.37 TCGA-VQ-A8P2-01 10 64159513 64159513 A - ZNF365 Intron 0.43 TCGA-VQ-A8P2-01 10 64973237 64973237 C A JMJD1C Missense_Mutation p.R897M 0.42 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 10 64975435 64975435 C T JMJD1C Missense_Mutation p.D234N 0.34 deleterious(0.02) probably_damaging(0.999) TCGA-VQ-A8P2-01 10 68979624 68979624 A G CTNNA3 Missense_Mutation p.L195S 0.39 deleterious(0) benign(0.286) TCGA-VQ-A8P2-01 10 69299328 69299328 G A CTNNA3 Missense_Mutation p.A131V 0.13 deleterious(0.03) benign(0.039) TCGA-VQ-A8P2-01 10 69881776 69881776 A G MYPN Missense_Mutation p.E194G 0.51 tolerated(0.1) benign(0.11) TCGA-VQ-A8P2-01 10 69990973 69990973 G A ATOH7 3'UTR 0.28 TCGA-VQ-A8P2-01 10 70209946 70209946 C T DNA2 Missense_Mutation p.D346N 0.38 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 10 70332272 70332273 - A TET1 Frame_Shift_Ins p.T62Nfs*4 0.45 TCGA-VQ-A8P2-01 10 70516198 70516198 C T CCAR1 Silent p.V598V 0.56 TCGA-VQ-A8P2-01 10 70549503 70549503 C T CCAR1 Missense_Mutation p.S1075F 0.12 deleterious(0.01) unknown(0) TCGA-VQ-A8P2-01 10 70696769 70696769 C A DDX50 Missense_Mutation p.A558E 0.13 deleterious(0) benign(0.291) TCGA-VQ-A8P2-01 10 70930975 70930975 C T VPS26A Nonsense_Mutation p.R312* 0.37 TCGA-VQ-A8P2-01 10 70960052 70960053 - T SUPV3L1 Frame_Shift_Ins p.Y441Lfs*10 0.26 TCGA-VQ-A8P2-01 10 71124646 71124646 C T HK1 Silent p.S165S 0.33 TCGA-VQ-A8P2-01 10 71129083 71129083 C A HK1 Missense_Mutation p.L232M 0.35 tolerated(0.23) possibly_damaging(0.688) TCGA-VQ-A8P2-01 10 71868958 71868958 C T H2AFY2 Silent p.S316S 0.38 TCGA-VQ-A8P2-01 10 71913610 71913610 C A SAR1A Missense_Mutation p.G155V 0.36 deleterious(0.02) possibly_damaging(0.86) TCGA-VQ-A8P2-01 10 72358173 72358173 G A PRF1 Missense_Mutation p.T435M 0.46 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 10 72358762 72358762 G A PRF1 Silent p.L239L 0.32 TCGA-VQ-A8P2-01 10 72511877 72511877 C T ADAMTS14 Missense_Mutation p.R878W 0.36 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 10 72531167 72531167 C A TBATA Nonsense_Mutation p.E341* 0.41 TCGA-VQ-A8P2-01 10 73521632 73521632 G A C10orf54 Silent p.G78G 0.41 TCGA-VQ-A8P2-01 10 73544118 73544118 G A CDH23 Missense_Mutation p.A1820T 0.43 tolerated(0.37) probably_damaging(0.913) TCGA-VQ-A8P2-01 10 73553051 73553051 C T CDH23 5'Flank 0.52 TCGA-VQ-A8P2-01 10 73767570 73767570 G A CHST3 Missense_Mutation p.A261T 0.12 tolerated(0.32) benign(0.026) TCGA-VQ-A8P2-01 10 74034701 74034701 G A DDIT4 Missense_Mutation p.E152K 0.11 deleterious(0.01) possibly_damaging(0.872) TCGA-VQ-A8P2-01 10 74326457 74326457 C A MICU1 Missense_Mutation p.R32I 0.38 deleterious_low_confidence(0) benign(0.375) TCGA-VQ-A8P2-01 10 74451962 74451962 G C MCU Missense_Mutation p.G18A 0.40 tolerated_low_confidence(0.65) unknown(0) TCGA-VQ-A8P2-01 10 74701027 74701027 G A PLA2G12B Silent p.C122C 0.45 TCGA-VQ-A8P2-01 10 75185885 75185885 C A MSS51 Missense_Mutation p.R251S 0.46 deleterious(0.05) benign(0.014) TCGA-VQ-A8P2-01 10 75187420 75187420 C T MSS51 Missense_Mutation p.A110T 0.33 tolerated(0.16) benign(0.058) TCGA-VQ-A8P2-01 10 75239251 75239251 C T PPP3CB Missense_Mutation p.R37H 0.32 tolerated(0.16) benign(0.009) TCGA-VQ-A8P2-01 10 75260583 75260583 A G USP54 Missense_Mutation p.V1442A 0.29 tolerated(0.53) benign(0.001) TCGA-VQ-A8P2-01 10 75276148 75276148 G A USP54 Missense_Mutation p.P1346S 0.29 tolerated(0.2) benign(0.009) TCGA-VQ-A8P2-01 10 75523614 75523614 G A SEC24C Missense_Mutation p.G367E 0.31 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 10 75532694 75532694 G A FUT11 Silent p.A201A 0.39 TCGA-VQ-A8P2-01 10 75535448 75535448 C T FUT11 3'UTR 0.41 TCGA-VQ-A8P2-01 10 75560464 75560464 C - ZSWIM8 Frame_Shift_Del p.Y1701Tfs*17 0.42 TCGA-VQ-A8P2-01 10 75562185 75562185 T C NDST2 3'UTR 0.36 TCGA-VQ-A8P2-01 10 75567416 75567416 C A NDST2 Missense_Mutation p.S244I 0.43 deleterious(0.03) benign(0.378) TCGA-VQ-A8P2-01 10 75567575 75567575 A - NDST2 Frame_Shift_Del p.L191Yfs*12 0.38 TCGA-VQ-A8P2-01 10 75574882 75574882 C T CAMK2G Missense_Mutation p.R521Q 0.43 tolerated_low_confidence(0.2) probably_damaging(0.991) TCGA-VQ-A8P2-01 10 75673133 75673133 G A PLAU Missense_Mutation p.A152T 0.33 tolerated(0.06) benign(0.176) TCGA-VQ-A8P2-01 10 7618615 7618615 G A ITIH5 Silent p.D593D 0.13 TCGA-VQ-A8P2-01 10 7618869 7618869 C T ITIH5 Missense_Mutation p.G509S 0.41 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 10 76790739 76790739 C T KAT6B Missense_Mutation p.H2053Y 0.37 probably_damaging(0.943) TCGA-VQ-A8P2-01 10 7679346 7679346 C T ITIH5 Missense_Mutation p.R166H 0.09 tolerated(0.19) benign(0.316) TCGA-VQ-A8P2-01 10 7830198 7830198 C A ATP5C1 Missense_Mutation p.L10M 0.40 tolerated(0.09) benign(0.072) TCGA-VQ-A8P2-01 10 78651329 78651329 C T KCNMA1 Missense_Mutation p.R1082H 0.45 deleterious(0) possibly_damaging(0.896) TCGA-VQ-A8P2-01 10 79744007 79744007 C T POLR3A Missense_Mutation p.A1098T 0.12 deleterious(0) possibly_damaging(0.896) TCGA-VQ-A8P2-01 10 79744934 79744934 G A POLR3A Missense_Mutation p.A1079V 0.31 tolerated(0.59) benign(0.002) TCGA-VQ-A8P2-01 10 79759792 79759792 G A POLR3A Missense_Mutation p.R855W 0.08 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 10 81065311 81065311 C T ZMIZ1 Silent p.G792G 0.12 TCGA-VQ-A8P2-01 10 8115780 8115780 A - GATA3 Frame_Shift_Del p.V379Cfs*26 0.35 TCGA-VQ-A8P2-01 10 81318735 81318735 G A SFTPA2 Missense_Mutation p.P67S 0.38 tolerated(0.46) possibly_damaging(0.673) TCGA-VQ-A8P2-01 10 81925859 81925859 T G ANXA11 Missense_Mutation p.E280A 0.24 tolerated(0.05) probably_damaging(0.934) TCGA-VQ-A8P2-01 10 82049091 82049091 G A MAT1A Missense_Mutation p.P30L 0.42 deleterious(0) probably_damaging(0.967) TCGA-VQ-A8P2-01 10 82363484 82363484 C T SH2D4B Nonsense_Mutation p.Q265* 0.21 TCGA-VQ-A8P2-01 10 83635847 83635847 G A NRG3 Missense_Mutation p.A251T 0.40 tolerated(1) benign(0.117) TCGA-VQ-A8P2-01 10 85903821 85903821 C A GHITM Silent p.G100G 0.42 TCGA-VQ-A8P2-01 10 85936261 85936261 G A C10orf99 Nonsense_Mutation p.W32* 0.43 TCGA-VQ-A8P2-01 10 86133490 86133490 C T CCSER2 Silent p.Y511Y 0.44 TCGA-VQ-A8P2-01 10 875656 875656 C A LARP4B Nonsense_Mutation p.E294* 0.33 TCGA-VQ-A8P2-01 10 88259630 88259630 T A WAPAL Missense_Mutation p.D457V 0.29 deleterious_low_confidence(0) benign(0.376) TCGA-VQ-A8P2-01 10 88469741 88469741 G A LDB3 Missense_Mutation p.A394T 0.40 tolerated(0.08) benign(0.041) TCGA-VQ-A8P2-01 10 88476392 88476392 C A LDB3 Missense_Mutation p.L519M 0.32 deleterious(0.02) probably_damaging(0.979) TCGA-VQ-A8P2-01 10 88649922 88649922 T - BMPR1A Frame_Shift_Del p.L59* 0.35 TCGA-VQ-A8P2-01 10 88768351 88768351 C T RP11-96C23.10 3'Flank 0.41 TCGA-VQ-A8P2-01 10 88768583 88768583 G A RP11-96C23.10 3'Flank 0.36 TCGA-VQ-A8P2-01 10 88769226 88769226 G A RP11-96C23.10 3'Flank 0.32 TCGA-VQ-A8P2-01 10 89265089 89265089 G A MINPP1 Silent p.A139A 0.16 TCGA-VQ-A8P2-01 10 90122463 90122463 C T RNLS Silent p.R182R 0.44 TCGA-VQ-A8P2-01 10 90429671 90429671 A G LIPF Missense_Mutation p.H177R 0.34 deleterious(0) benign(0.01) TCGA-VQ-A8P2-01 10 90682146 90682146 A - STAMBPL1 Frame_Shift_Del p.K405Rfs*21 0.79 TCGA-VQ-A8P2-01 10 90694964 90694964 G T ACTA2 3'UTR 0.41 TCGA-VQ-A8P2-01 10 90966548 90966548 C T CH25H Missense_Mutation p.A168T 0.31 deleterious(0) probably_damaging(0.982) TCGA-VQ-A8P2-01 10 91066055 91066055 G A IFIT2 Silent p.Q114Q 0.09 TCGA-VQ-A8P2-01 10 91098471 91098471 T A IFIT3 Missense_Mutation p.F20Y 0.14 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 10 91162954 91162954 G T IFIT1 Missense_Mutation p.G308W 0.22 tolerated(0.19) benign(0) TCGA-VQ-A8P2-01 10 91196052 91196052 A G SLC16A12 Silent p.V351V 0.37 TCGA-VQ-A8P2-01 10 92654611 92654611 C T RPP30 Missense_Mutation p.S171F 0.07 deleterious(0) probably_damaging(0.934) TCGA-VQ-A8P2-01 10 93369 93369 C T TUBB8 Missense_Mutation p.M321I 0.36 tolerated_low_confidence(0.14) benign(0.076) TCGA-VQ-A8P2-01 10 93631 93631 C T TUBB8 Missense_Mutation p.S234N 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.757) TCGA-VQ-A8P2-01 10 93713630 93713630 G T BTAF1 Missense_Mutation p.S234I 0.29 tolerated(0.17) benign(0.039) TCGA-VQ-A8P2-01 10 94366474 94366474 G A KIF11 Splice_Site p.X103_splice 0.19 TCGA-VQ-A8P2-01 10 94454394 94454394 G T HHEX Missense_Mutation p.G228C 0.12 tolerated(0.07) possibly_damaging(0.594) TCGA-VQ-A8P2-01 10 94825739 94825739 C T CYP26C1 Silent p.A296A 0.27 TCGA-VQ-A8P2-01 10 95093660 95093660 C T MYOF Missense_Mutation p.R1525Q 0.45 tolerated(0.09) benign(0.029) TCGA-VQ-A8P2-01 10 95111211 95111211 C T MYOF Missense_Mutation p.G1261R 0.32 deleterious(0) probably_damaging(0.989) TCGA-VQ-A8P2-01 10 95123802 95123802 C T MYOF Silent p.T928T 0.36 TCGA-VQ-A8P2-01 10 95152686 95152686 C T MYOF Missense_Mutation p.A482T 0.34 tolerated(0.54) benign(0.001) TCGA-VQ-A8P2-01 10 95399973 95399973 G A PDE6C Silent p.E543E 0.18 TCGA-VQ-A8P2-01 10 96039448 96039448 C T PLCE1 Intron 0.52 TCGA-VQ-A8P2-01 10 96064309 96064309 A C PLCE1 Silent p.P1843P 0.40 TCGA-VQ-A8P2-01 10 96109974 96109974 C T NOC3L Missense_Mutation p.A342T 0.10 deleterious(0) possibly_damaging(0.79) TCGA-VQ-A8P2-01 10 96443536 96443536 G C CYP2C18 5'UTR 0.39 TCGA-VQ-A8P2-01 10 96447906 96447906 G A CYP2C18 Missense_Mutation p.R119K 0.34 tolerated(0.35) benign(0.005) TCGA-VQ-A8P2-01 10 96535192 96535193 - C CYP2C19 Frame_Shift_Ins p.S127Lfs*16 0.28 TCGA-VQ-A8P2-01 10 96708931 96708931 G A CYP2C9 Missense_Mutation p.V237I 0.50 tolerated(0.71) benign(0.002) TCGA-VQ-A8P2-01 10 96827151 96827151 A C CYP2C8 Intron 0.47 TCGA-VQ-A8P2-01 10 97779109 97779109 A - CC2D2B Intron 0.29 TCGA-VQ-A8P2-01 10 97918856 97918856 A - ZNF518A RNA 0.55 TCGA-VQ-A8P2-01 10 97956725 97956725 G T BLNK Missense_Mutation p.P397H 0.38 deleterious(0) probably_damaging(0.982) TCGA-VQ-A8P2-01 10 98088496 98088496 G T DNTT Missense_Mutation p.G341V 0.38 deleterious(0) probably_damaging(0.994) TCGA-VQ-A8P2-01 10 98092321 98092321 G A DNTT Missense_Mutation p.A443T 0.42 deleterious(0.02) probably_damaging(0.933) TCGA-VQ-A8P2-01 10 98412522 98412522 C A PIK3AP1 Missense_Mutation p.E215D 0.34 deleterious(0.04) benign(0.012) TCGA-VQ-A8P2-01 10 98715025 98715025 C T LCOR Silent p.S216S 0.11 TCGA-VQ-A8P2-01 10 98763841 98763841 C T SLIT1 Silent p.A1283A 0.34 TCGA-VQ-A8P2-01 10 98807530 98807530 G A SLIT1 Silent p.C517C 0.39 TCGA-VQ-A8P2-01 10 99130763 99130763 C T RRP12 Missense_Mutation p.A807T 0.52 tolerated(0.07) benign(0.007) TCGA-VQ-A8P2-01 10 99190237 99190237 G T PGAM1 Missense_Mutation p.V81L 0.17 deleterious(0.02) benign(0.159) TCGA-VQ-A8P2-01 10 99426869 99426869 C T PI4K2A Missense_Mutation p.R394W 0.34 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 10 99437693 99437693 C T AVPI1 Missense_Mutation p.S126N 0.11 tolerated(0.15) benign(0.01) TCGA-VQ-A8P2-01 11 100211298 100211298 T C CNTN5 Missense_Mutation p.L945S 0.60 tolerated(0.33) possibly_damaging(0.904) TCGA-VQ-A8P2-01 11 101347164 101347164 C T TRPC6 Missense_Mutation p.A538T 0.45 deleterious(0.02) possibly_damaging(0.611) TCGA-VQ-A8P2-01 11 101834310 101834310 C T KIAA1377 Silent p.H848H 0.33 TCGA-VQ-A8P2-01 11 102056752 102056752 C A YAP1 Missense_Mutation p.P231H 0.43 deleterious(0) probably_damaging(0.95) TCGA-VQ-A8P2-01 11 102195920 102195920 G T BIRC3 Missense_Mutation p.R227I 0.25 deleterious(0) probably_damaging(0.987) TCGA-VQ-A8P2-01 11 102319594 102319594 C A TMEM123 Missense_Mutation p.A36S 0.40 tolerated(1) unknown(0) TCGA-VQ-A8P2-01 11 102713526 102713526 G A MMP3 Missense_Mutation p.T76M 0.43 tolerated(0.07) probably_damaging(0.983) TCGA-VQ-A8P2-01 11 102714260 102714260 G A MMP3 Silent p.I6I 0.15 TCGA-VQ-A8P2-01 11 1027455 1027455 G T MUC6 Missense_Mutation p.L682M 0.38 unknown(0) TCGA-VQ-A8P2-01 11 103027330 103027330 G A DYNC2H1 Missense_Mutation p.G1320R 0.14 benign(0.022) TCGA-VQ-A8P2-01 11 10327230 10327230 C T ADM 5'UTR 0.45 TCGA-VQ-A8P2-01 11 10327580 10327580 C T ADM Silent p.A61A 0.45 TCGA-VQ-A8P2-01 11 103306685 103306685 G A DYNC2H1 Nonsense_Mutation p.W4134* 0.33 TCGA-VQ-A8P2-01 11 103907757 103907757 C T DDI1 Silent p.G69G 0.07 TCGA-VQ-A8P2-01 11 10503705 10503705 G A AMPD3 Silent p.P183P 0.45 TCGA-VQ-A8P2-01 11 10517252 10517252 C T AMPD3 Missense_Mutation p.R477C 0.31 deleterious(0.01) probably_damaging(0.984) TCGA-VQ-A8P2-01 11 10521674 10521674 C T AMPD3 Silent p.S542S 0.40 TCGA-VQ-A8P2-01 11 105623708 105623708 C A GRIA4 Missense_Mutation p.F83L 0.35 tolerated(0.32) possibly_damaging(0.639) TCGA-VQ-A8P2-01 11 105623907 105623907 G A GRIA4 Missense_Mutation p.E150K 0.41 tolerated(1) benign(0.003) TCGA-VQ-A8P2-01 11 105845056 105845056 G A GRIA4 Missense_Mutation p.S810N 0.06 deleterious(0.01) possibly_damaging(0.868) TCGA-VQ-A8P2-01 11 107925660 107925660 G A CUL5 Missense_Mutation p.R253Q 0.38 tolerated(0.56) benign(0.001) TCGA-VQ-A8P2-01 11 10800334 10800334 C T CTR9 Silent p.S1068S 0.45 TCGA-VQ-A8P2-01 11 108032472 108032472 G A NPAT Missense_Mutation p.A1114V 0.48 tolerated(0.15) benign(0.216) TCGA-VQ-A8P2-01 11 108043129 108043129 C T NPAT Missense_Mutation p.G861D 0.43 tolerated(0.05) possibly_damaging(0.721) TCGA-VQ-A8P2-01 11 108058870 108058870 T C NPAT Missense_Mutation p.E198G 0.39 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 11 108141997 108141997 C T ATM Missense_Mutation p.R981C 0.21 deleterious(0) possibly_damaging(0.75) TCGA-VQ-A8P2-01 11 108151887 108151887 G C ATM Missense_Mutation p.V1190L 0.35 deleterious(0.04) benign(0.014) TCGA-VQ-A8P2-01 11 1081812 1081812 C T MUC2 Silent p.S580S 0.25 TCGA-VQ-A8P2-01 11 108188171 108188171 C A ATM Missense_Mutation p.D2090E 0.15 tolerated(1) benign(0) TCGA-VQ-A8P2-01 11 108409861 108409862 - T EXPH5 Frame_Shift_Ins p.P112Afs*39 0.30 TCGA-VQ-A8P2-01 11 110451758 110451758 C T ARHGAP20 Missense_Mutation p.D638N 0.49 tolerated(0.06) benign(0.04) TCGA-VQ-A8P2-01 11 111225155 111225155 G T POU2AF1 Missense_Mutation p.P201H 0.44 tolerated(0.08) probably_damaging(0.962) TCGA-VQ-A8P2-01 11 111625263 111625263 C A PPP2R1B Missense_Mutation p.R330I 0.17 deleterious(0.01) possibly_damaging(0.817) TCGA-VQ-A8P2-01 11 111866857 111866857 G T DIXDC1 Missense_Mutation p.W580C 0.29 deleterious(0) possibly_damaging(0.851) TCGA-VQ-A8P2-01 11 111942444 111942444 C T PIH1D2 Silent p.Q72Q 0.43 TCGA-VQ-A8P2-01 11 113195399 113195399 C T TTC12 Missense_Mutation p.A106V 0.40 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 11 113563864 113563864 G A TMPRSS5 Missense_Mutation p.P298L 0.44 deleterious(0.01) probably_damaging(0.97) TCGA-VQ-A8P2-01 11 113670047 113670047 C T USP28 Missense_Mutation p.R1050Q 0.34 tolerated(0.24) probably_damaging(0.922) TCGA-VQ-A8P2-01 11 113674534 113674534 G T USP28 Silent p.L908L 0.52 TCGA-VQ-A8P2-01 11 113711432 113711432 C T USP28 Missense_Mutation p.R141H 0.08 tolerated(0.28) probably_damaging(0.999) TCGA-VQ-A8P2-01 11 11374204 11374205 TG - CSNK2A3 Frame_Shift_Del p.H154Qfs*7 0.30 TCGA-VQ-A8P2-01 11 113803074 113803074 G T HTR3B Missense_Mutation p.E144D 0.13 deleterious(0.03) benign(0.245) TCGA-VQ-A8P2-01 11 113934179 113934179 G A ZBTB16 Missense_Mutation p.A53T 0.18 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 11 11394083 11394083 C A GALNT18 Missense_Mutation p.E357D 0.42 deleterious(0) benign(0.108) TCGA-VQ-A8P2-01 11 114113009 114113009 G A ZBTB16 Missense_Mutation p.R525H 0.41 deleterious(0) probably_damaging(0.968) TCGA-VQ-A8P2-01 11 114121253 114121253 G A ZBTB16 Silent p.T666T 0.32 TCGA-VQ-A8P2-01 11 114392758 114392758 C T NXPE1 Missense_Mutation p.D384N 0.32 tolerated(1) benign(0) TCGA-VQ-A8P2-01 11 114393778 114393778 T C NXPE1 Missense_Mutation p.M169V 0.36 deleterious(0.03) benign(0.103) TCGA-VQ-A8P2-01 11 114442032 114442032 G T NXPE4 Missense_Mutation p.D421E 0.43 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 11 115069145 115069145 C T CADM1 Intron 0.19 TCGA-VQ-A8P2-01 11 116649674 116649674 C A ZNF259 Missense_Mutation p.E449D 0.50 deleterious(0.03) benign(0.32) TCGA-VQ-A8P2-01 11 116692030 116692030 G A APOA4 Silent p.N248N 0.11 TCGA-VQ-A8P2-01 11 116706604 116706604 G A APOA1 Silent p.L242L 0.40 TCGA-VQ-A8P2-01 11 116767012 116767012 G A SIK3 Silent p.R216R 0.15 TCGA-VQ-A8P2-01 11 117066550 117066550 G A SIDT2 Silent p.R785R 0.09 TCGA-VQ-A8P2-01 11 117234187 117234187 G T CEP164 Missense_Mutation p.D244Y 0.38 deleterious(0) probably_damaging(0.992) TCGA-VQ-A8P2-01 11 117307927 117307927 G A DSCAML1 Missense_Mutation p.A1604V 0.13 deleterious(0) probably_damaging(0.925) TCGA-VQ-A8P2-01 11 117351922 117351922 C T DSCAML1 Missense_Mutation p.E935K 0.41 tolerated(0.08) benign(0.17) TCGA-VQ-A8P2-01 11 117789193 117789193 C T TMPRSS13 Missense_Mutation p.G128R 0.32 tolerated(0.4) benign(0.05) TCGA-VQ-A8P2-01 11 118123003 118123003 G A MPZL3 Nonsense_Mutation p.Q3* 0.20 TCGA-VQ-A8P2-01 11 118134883 118134883 C T MPZL2 5'UTR 0.34 TCGA-VQ-A8P2-01 11 118183430 118183430 C T CD3E Silent p.G67G 0.08 TCGA-VQ-A8P2-01 11 118344185 118344186 - C KMT2A Frame_Shift_Ins p.S774Vfs*12 0.35 TCGA-VQ-A8P2-01 11 118344802 118344802 C T KMT2A Silent p.L976L 0.30 TCGA-VQ-A8P2-01 11 118360945 118360945 C T KMT2A Silent p.C1559C 0.38 TCGA-VQ-A8P2-01 11 118402895 118402895 G A TMEM25 Missense_Mutation p.G34D 0.33 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 11 118403689 118403689 T A TMEM25 Missense_Mutation p.L147H 0.49 deleterious(0) probably_damaging(0.911) TCGA-VQ-A8P2-01 11 118498978 118498978 C A PHLDB1 Missense_Mutation p.P480H 0.11 deleterious(0) benign(0.168) TCGA-VQ-A8P2-01 11 118499293 118499293 A G PHLDB1 Missense_Mutation p.N585S 0.46 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 11 118502646 118502646 G A PHLDB1 Missense_Mutation p.S706N 0.37 tolerated(0.24) benign(0.002) TCGA-VQ-A8P2-01 11 118506149 118506149 G T PHLDB1 Missense_Mutation p.E806D 0.33 deleterious(0) benign(0.184) TCGA-VQ-A8P2-01 11 118526574 118526574 G A PHLDB1 Missense_Mutation p.R1322K 0.47 tolerated(0.4) possibly_damaging(0.896) TCGA-VQ-A8P2-01 11 118529627 118529627 G A TREH Missense_Mutation p.A511V 0.41 tolerated(0.08) benign(0.034) TCGA-VQ-A8P2-01 11 118532346 118532346 G A TREH Missense_Mutation p.T206I 0.09 tolerated(0.21) benign(0.003) TCGA-VQ-A8P2-01 11 118532363 118532363 G T TREH Missense_Mutation p.F200L 0.32 deleterious(0.03) probably_damaging(0.997) TCGA-VQ-A8P2-01 11 118765084 118765084 C T CXCR5 Silent p.I277I 0.38 TCGA-VQ-A8P2-01 11 118765255 118765255 G A CXCR5 Silent p.S334S 0.49 TCGA-VQ-A8P2-01 11 118769229 118769229 C T BCL9L Silent p.Q1465Q 0.12 TCGA-VQ-A8P2-01 11 118769412 118769412 G A BCL9L Silent p.G1404G 0.55 TCGA-VQ-A8P2-01 11 118771830 118771830 C T BCL9L Silent p.Q874Q 0.56 TCGA-VQ-A8P2-01 11 118851224 118851224 G A FOXR1 Silent p.T212T 0.29 TCGA-VQ-A8P2-01 11 118942313 118942313 T C VPS11 Missense_Mutation p.I214T 0.10 tolerated(0.57) benign(0.001) TCGA-VQ-A8P2-01 11 118949009 118949009 C T VPS11 Nonsense_Mutation p.R629* 0.40 TCGA-VQ-A8P2-01 11 118969143 118969143 A - DPAGT1 Frame_Shift_Del p.F233Sfs*28 0.36 TCGA-VQ-A8P2-01 11 119044210 119044210 G A NLRX1 Silent p.R84R 0.48 TCGA-VQ-A8P2-01 11 119182557 119182557 C T MCAM Missense_Mutation p.G416S 0.38 deleterious(0) possibly_damaging(0.878) TCGA-VQ-A8P2-01 11 119185608 119185608 C T MCAM Missense_Mutation p.R112H 0.47 deleterious(0.04) probably_damaging(0.998) TCGA-VQ-A8P2-01 11 119207113 119207113 G T RNF26 Missense_Mutation p.Q427H 0.15 deleterious(0.03) possibly_damaging(0.448) TCGA-VQ-A8P2-01 11 119214608 119214608 G A MFRP Silent p.L348L 0.40 TCGA-VQ-A8P2-01 11 119228902 119228902 G A USP2 Missense_Mutation p.T433M 0.29 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8P2-01 11 119243867 119243867 G A USP2 Silent p.S108S 0.39 TCGA-VQ-A8P2-01 11 119535969 119535969 G A PVRL1 Missense_Mutation p.R348C 0.37 deleterious(0.03) benign(0.424) TCGA-VQ-A8P2-01 11 119535982 119535982 G A PVRL1 Silent p.P343P 0.67 TCGA-VQ-A8P2-01 11 119535992 119535992 G A PVRL1 Missense_Mutation p.P340L 0.32 tolerated(0.13) benign(0.047) TCGA-VQ-A8P2-01 11 11986089 11986089 C T DKK3 Silent p.E325E 0.40 TCGA-VQ-A8P2-01 11 120096500 120096500 G A OAF Missense_Mutation p.R121Q 0.46 deleterious(0) probably_damaging(0.993) TCGA-VQ-A8P2-01 11 120175870 120175870 G T POU2F3 Missense_Mutation p.E194D 0.29 deleterious(0) probably_damaging(0.953) TCGA-VQ-A8P2-01 11 120189185 120189185 G A POU2F3 3'UTR 0.22 TCGA-VQ-A8P2-01 11 120957640 120957640 A G TBCEL Silent p.K370K 0.12 TCGA-VQ-A8P2-01 11 121174117 121174117 T - SC5D Frame_Shift_Del p.F13Lfs*23 0.29 TCGA-VQ-A8P2-01 11 121178207 121178207 A G SC5D Missense_Mutation p.T296A 0.52 tolerated(0.54) benign(0.002) TCGA-VQ-A8P2-01 11 121454262 121454262 G A SORL1 Missense_Mutation p.D1226N 0.16 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 11 121986446 121986446 T A BLID Missense_Mutation p.E62V 0.35 deleterious_low_confidence(0) benign(0.07) TCGA-VQ-A8P2-01 11 12234836 12234836 G A MICAL2 Silent p.A242A 0.15 TCGA-VQ-A8P2-01 11 122669715 122669715 G A UBASH3B Missense_Mutation p.V475I 0.46 tolerated(0.53) benign(0.034) TCGA-VQ-A8P2-01 11 122795629 122795629 G A C11orf63 Missense_Mutation p.D297N 0.36 deleterious(0.04) possibly_damaging(0.561) TCGA-VQ-A8P2-01 11 123596737 123596737 G A ZNF202 Missense_Mutation p.H639Y 0.18 deleterious(0) probably_damaging(0.989) TCGA-VQ-A8P2-01 11 123756078 123756078 A G TMEM225 Missense_Mutation p.W19R 0.28 deleterious(0.02) probably_damaging(0.961) TCGA-VQ-A8P2-01 11 123886998 123886998 C A OR10G4 Silent p.T239T 0.36 TCGA-VQ-A8P2-01 11 123989074 123989074 G A VWA5A Missense_Mutation p.R142H 0.35 deleterious(0.01) benign(0.119) TCGA-VQ-A8P2-01 11 124013212 124013212 T C VWA5A Missense_Mutation p.L696P 0.47 deleterious(0.03) benign(0.417) TCGA-VQ-A8P2-01 11 124310192 124310192 A - OR8B8 Frame_Shift_Del p.S264Lfs*3 0.25 TCGA-VQ-A8P2-01 11 124482912 124482912 G A PANX3 Missense_Mutation p.S73N 0.32 deleterious(0) benign(0.304) TCGA-VQ-A8P2-01 11 124530686 124530686 C T SIAE Silent p.T81T 0.14 TCGA-VQ-A8P2-01 11 124637683 124637683 G A MSANTD2 Missense_Mutation p.R305W 0.44 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-VQ-A8P2-01 11 124761571 124761571 G A ROBO4 Missense_Mutation p.R559C 0.30 deleterious(0) possibly_damaging(0.871) TCGA-VQ-A8P2-01 11 124792304 124792304 G T HEPACAM Missense_Mutation p.L310I 0.34 deleterious(0) possibly_damaging(0.804) TCGA-VQ-A8P2-01 11 124967387 124967387 T A TMEM218 3'UTR 0.50 TCGA-VQ-A8P2-01 11 125299969 125299969 T G PKNOX2 Missense_Mutation p.F375C 0.33 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8P2-01 11 125514441 125514441 G A CHEK1 Missense_Mutation p.R379Q 0.27 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 11 125765485 125765485 C T PUS3 Missense_Mutation p.R193Q 0.50 deleterious(0) probably_damaging(0.994) TCGA-VQ-A8P2-01 11 125830915 125830915 A G CDON Silent p.A1262A 0.40 TCGA-VQ-A8P2-01 11 1260724 1260724 T G MUC5B Missense_Mutation p.C1171G 0.40 unknown(0) TCGA-VQ-A8P2-01 11 126146336 126146336 C T FOXRED1 Missense_Mutation p.P340L 0.10 deleterious(0) probably_damaging(0.969) TCGA-VQ-A8P2-01 11 126160801 126160801 G A TIRAP Silent p.S4S 0.24 TCGA-VQ-A8P2-01 11 126215437 126215437 C T DCPS Missense_Mutation p.R315C 0.36 deleterious(0.05) benign(0.03) TCGA-VQ-A8P2-01 11 1262164 1262164 G T MUC5B Missense_Mutation p.G1352C 0.27 unknown(0) TCGA-VQ-A8P2-01 11 1264929 1264929 G T MUC5B Silent p.P2273P 0.23 TCGA-VQ-A8P2-01 11 1268805 1268805 G A MUC5B Silent p.T3565T 0.15 TCGA-VQ-A8P2-01 11 1278846 1278846 C T MUC5B Silent p.D5452D 0.38 TCGA-VQ-A8P2-01 11 128708964 128708964 C A KCNJ1 3'UTR 0.29 TCGA-VQ-A8P2-01 11 128840497 128840497 C T ARHGAP32 Silent p.R1523R 0.27 TCGA-VQ-A8P2-01 11 128840929 128840929 C T ARHGAP32 Silent p.Q1379Q 0.27 TCGA-VQ-A8P2-01 11 128843131 128843131 C T ARHGAP32 Silent p.A1076A 0.36 TCGA-VQ-A8P2-01 11 12901181 12901181 G A TEAD1 Intron 0.36 TCGA-VQ-A8P2-01 11 129814885 129814885 C T PRDM10 Silent p.A181A 0.40 TCGA-VQ-A8P2-01 11 132527133 132527133 G A OPCML Silent p.S83S 0.12 TCGA-VQ-A8P2-01 11 133789708 133789708 C T IGSF9B Silent p.T1304T 0.50 TCGA-VQ-A8P2-01 11 133790982 133790982 C T IGSF9B Missense_Mutation p.A880T 0.14 deleterious(0.05) benign(0.174) TCGA-VQ-A8P2-01 11 133800930 133800930 C T IGSF9B Missense_Mutation p.A490T 0.11 deleterious(0) possibly_damaging(0.563) TCGA-VQ-A8P2-01 11 13393796 13393796 G T ARNTL Nonsense_Mutation p.E302* 0.41 TCGA-VQ-A8P2-01 11 134118351 134118351 T C THYN1 Missense_Mutation p.E220G 0.40 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8P2-01 11 134151335 134151335 C A GLB1L3 Missense_Mutation p.L143M 0.07 deleterious(0.03) possibly_damaging(0.841) TCGA-VQ-A8P2-01 11 134188543 134188543 G A GLB1L3 Missense_Mutation p.V600M 0.47 deleterious(0.01) probably_damaging(0.98) TCGA-VQ-A8P2-01 11 134254044 134254044 C T B3GAT1 Missense_Mutation p.A51T 0.38 tolerated_low_confidence(0.6) benign(0) TCGA-VQ-A8P2-01 11 13441236 13441236 A G BTBD10 Missense_Mutation p.S119P 0.40 tolerated_low_confidence(0.07) benign(0.01) TCGA-VQ-A8P2-01 11 13743342 13743342 C A FAR1 Missense_Mutation p.S398Y 0.24 deleterious(0.01) possibly_damaging(0.738) TCGA-VQ-A8P2-01 11 13984524 13984524 G A SPON1 RNA 0.54 TCGA-VQ-A8P2-01 11 14279348 14279348 C T SPON1 RNA 0.21 TCGA-VQ-A8P2-01 11 14535404 14535404 G A PSMA1 Missense_Mutation p.R131W 0.37 deleterious(0.04) benign(0.213) TCGA-VQ-A8P2-01 11 1471021 1471021 C T BRSK2 Silent p.S460S 0.10 TCGA-VQ-A8P2-01 11 14865490 14865490 C T PDE3B Missense_Mutation p.A813V 0.36 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 11 14913670 14913670 G A CYP2R1 Missense_Mutation p.R28C 0.52 tolerated(0.17) possibly_damaging(0.828) TCGA-VQ-A8P2-01 11 14990428 14990428 C T CALCA Missense_Mutation p.A115T 0.45 tolerated(0.48) benign(0.11) TCGA-VQ-A8P2-01 11 15247312 15247312 C T INSC Missense_Mutation p.R417C 0.32 deleterious(0.02) possibly_damaging(0.529) TCGA-VQ-A8P2-01 11 15994577 15994577 C T SOX6 Silent p.S735S 0.46 TCGA-VQ-A8P2-01 11 1606301 1606301 G A KRTAP5-1 Missense_Mutation p.S60F 0.39 deleterious_low_confidence(0.01) unknown(0) TCGA-VQ-A8P2-01 11 16812599 16812599 G A PLEKHA7 Nonsense_Mutation p.R965* 0.53 TCGA-VQ-A8P2-01 11 16837726 16837726 G A PLEKHA7 Missense_Mutation p.S651L 0.47 deleterious(0.02) possibly_damaging(0.833) TCGA-VQ-A8P2-01 11 16847690 16847690 C T PLEKHA7 Silent p.R440R 0.45 TCGA-VQ-A8P2-01 11 16863139 16863139 G A PLEKHA7 Missense_Mutation p.A276V 0.41 tolerated(0.17) benign(0.099) TCGA-VQ-A8P2-01 11 17170320 17170320 C T PIK3C2A Missense_Mutation p.E448K 0.32 deleterious(0.01) possibly_damaging(0.79) TCGA-VQ-A8P2-01 11 17408599 17408599 C T KCNJ11 Missense_Mutation p.R347H 0.36 deleterious(0.01) benign(0.002) TCGA-VQ-A8P2-01 11 17409629 17409629 G A KCNJ11 Missense_Mutation p.R4C 0.35 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8P2-01 11 17414552 17414552 G A ABCC8 Missense_Mutation p.R1578C 0.09 deleterious(0) benign(0.339) TCGA-VQ-A8P2-01 11 17449859 17449859 C T ABCC8 Missense_Mutation p.D673N 0.07 tolerated(0.27) benign(0.022) TCGA-VQ-A8P2-01 11 17483138 17483138 C T ABCC8 Missense_Mutation p.A272T 0.41 tolerated(0.24) benign(0.001) TCGA-VQ-A8P2-01 11 17523054 17523054 T C USH1C Missense_Mutation p.D752G 0.66 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-VQ-A8P2-01 11 17544789 17544789 C T USH1C Missense_Mutation p.R282H 0.38 deleterious(0.03) possibly_damaging(0.846) TCGA-VQ-A8P2-01 11 17548770 17548770 G A USH1C Missense_Mutation p.H166Y 0.25 deleterious(0.05) probably_damaging(0.969) TCGA-VQ-A8P2-01 11 17757628 17757628 C T KCNC1 Missense_Mutation p.R27C 0.43 deleterious(0) probably_damaging(0.969) TCGA-VQ-A8P2-01 11 17757939 17757939 C T KCNC1 Silent p.S130S 0.56 TCGA-VQ-A8P2-01 11 18108406 18108406 T C SAAL1 Intron 0.13 TCGA-VQ-A8P2-01 11 18124849 18124849 C A SAAL1 Missense_Mutation p.E60D 0.23 tolerated(0.27) benign(0.073) TCGA-VQ-A8P2-01 11 18252930 18252930 C A SAA4 3'UTR 0.38 TCGA-VQ-A8P2-01 11 18309206 18309206 G A HPS5 Nonsense_Mutation p.R865* 0.38 TCGA-VQ-A8P2-01 11 18373444 18373444 C T GTF2H1 Missense_Mutation p.S357F 0.35 tolerated(0.06) benign(0.005) TCGA-VQ-A8P2-01 11 18421041 18421041 G A LDHA Missense_Mutation p.D93N 0.11 deleterious(0.04) possibly_damaging(0.802) TCGA-VQ-A8P2-01 11 18424542 18424542 G A LDHA Missense_Mutation p.E221K 0.14 deleterious(0.01) probably_damaging(0.998) TCGA-VQ-A8P2-01 11 18428720 18428720 G A LDHA Silent p.Q326Q 0.31 TCGA-VQ-A8P2-01 11 1862816 1862816 G T TNNI2 3'UTR 0.32 TCGA-VQ-A8P2-01 11 18636313 18636313 C T SPTY2D1 Missense_Mutation p.G503E 0.36 deleterious(0.03) probably_damaging(0.982) TCGA-VQ-A8P2-01 11 18723192 18723192 C T TMEM86A Missense_Mutation p.T120I 0.39 tolerated(0.39) benign(0.345) TCGA-VQ-A8P2-01 11 18735599 18735599 C T IGSF22 Missense_Mutation p.R632Q 0.44 tolerated(0.4) benign(0.053) TCGA-VQ-A8P2-01 11 1904653 1904653 G A LSP1 Missense_Mutation p.G249S 0.30 tolerated_low_confidence(1) benign(0.005) TCGA-VQ-A8P2-01 11 19076983 19076983 C T MRGPRX2 Missense_Mutation p.E323K 0.42 tolerated(0.11) benign(0.38) TCGA-VQ-A8P2-01 11 19077570 19077570 C T MRGPRX2 Missense_Mutation p.R127H 0.38 deleterious(0.05) possibly_damaging(0.67) TCGA-VQ-A8P2-01 11 19172322 19172322 G A ZDHHC13 Missense_Mutation p.A190T 0.11 tolerated(0.14) benign(0.261) TCGA-VQ-A8P2-01 11 1944793 1944793 G A TNNT3 Missense_Mutation p.E14K 0.39 tolerated_low_confidence(0.11) unknown(0) TCGA-VQ-A8P2-01 11 20385853 20385853 T C HTATIP2 Silent p.L58L 0.15 TCGA-VQ-A8P2-01 11 20629140 20629140 C T SLC6A5 Silent p.G309G 0.36 TCGA-VQ-A8P2-01 11 2156680 2156680 G A IGF2 Missense_Mutation p.A81V 0.47 deleterious(0.01) possibly_damaging(0.656) TCGA-VQ-A8P2-01 11 2156703 2156703 G T IGF2 Silent p.A73A 0.22 TCGA-VQ-A8P2-01 11 22360100 22360100 G A SLC17A6 Silent p.R7R 0.38 TCGA-VQ-A8P2-01 11 22646319 22646319 G T FANCF Silent p.I346I 0.42 TCGA-VQ-A8P2-01 11 2418031 2418031 C T CD81 Intron 0.44 TCGA-VQ-A8P2-01 11 2593269 2593269 G T KCNQ1 Missense_Mutation p.R237M 0.20 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 11 26587062 26587062 C T MUC15 Missense_Mutation p.S142N 0.37 tolerated_low_confidence(0.19) benign(0.039) TCGA-VQ-A8P2-01 11 26743035 26743035 C T SLC5A12 Missense_Mutation p.R76H 0.39 deleterious(0.01) probably_damaging(0.944) TCGA-VQ-A8P2-01 11 27695724 27695724 G A BDNF Silent p.G36G 0.31 TCGA-VQ-A8P2-01 11 278599 278599 G T NLRP6 Splice_Site p.X10_splice 0.32 TCGA-VQ-A8P2-01 11 3033434 3033434 C T CARS Missense_Mutation p.E687K 0.44 tolerated(0.16) benign(0.027) TCGA-VQ-A8P2-01 11 30358181 30358181 C A ARL14EP Missense_Mutation p.L208I 0.07 tolerated(0.05) benign(0.366) TCGA-VQ-A8P2-01 11 31327258 31327258 C T DCDC1 Missense_Mutation p.G220S 0.10 tolerated(0.08) possibly_damaging(0.901) TCGA-VQ-A8P2-01 11 32632763 32632763 A G CCDC73 Missense_Mutation p.I982T 0.44 deleterious(0.02) benign(0.273) TCGA-VQ-A8P2-01 11 32657349 32657349 T C CCDC73 Missense_Mutation p.K360E 0.45 tolerated(1) benign(0.001) TCGA-VQ-A8P2-01 11 33106773 33106773 C T CSTF3 Missense_Mutation p.G672S 0.08 tolerated(0.65) benign(0.018) TCGA-VQ-A8P2-01 11 33780124 33780124 C T FBXO3 Missense_Mutation p.D128N 0.37 tolerated(0.33) benign(0.007) TCGA-VQ-A8P2-01 11 3381700 3381700 G A ZNF195 Missense_Mutation p.L180F 0.32 tolerated(0.67) probably_damaging(0.969) TCGA-VQ-A8P2-01 11 34097814 34097814 G A CAPRIN1 Missense_Mutation p.R133Q 0.16 deleterious(0) possibly_damaging(0.637) TCGA-VQ-A8P2-01 11 34226098 34226098 C T ABTB2 Silent p.S341S 0.54 TCGA-VQ-A8P2-01 11 35339032 35339032 G A SLC1A2 Nonsense_Mutation p.R17* 0.17 TCGA-VQ-A8P2-01 11 36119924 36119924 G A LDLRAD3 Missense_Mutation p.G123S 0.40 deleterious(0.05) probably_damaging(0.935) TCGA-VQ-A8P2-01 11 36467868 36467868 C T PRR5L Missense_Mutation p.R155C 0.36 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 11 36596864 36596864 G A RAG1 Silent p.T670T 0.32 TCGA-VQ-A8P2-01 11 372924 372924 C T B4GALNT4 Silent p.L141L 0.28 TCGA-VQ-A8P2-01 11 380170 380170 G A B4GALNT4 Missense_Mutation p.A895T 0.48 deleterious(0) unknown(0) TCGA-VQ-A8P2-01 11 380921 380921 G - B4GALNT4 Frame_Shift_Del p.G991Vfs*71 0.22 TCGA-VQ-A8P2-01 11 3848995 3848995 G A RHOG Missense_Mutation p.T125I 0.29 tolerated(0.09) benign(0.045) TCGA-VQ-A8P2-01 11 396663 396663 G A PKP3 Silent p.Q96Q 0.22 TCGA-VQ-A8P2-01 11 399100 399100 G A PKP3 Missense_Mutation p.A393T 0.18 tolerated(0.58) benign(0.029) TCGA-VQ-A8P2-01 11 43345126 43345126 G A API5 Silent p.S230S 0.13 TCGA-VQ-A8P2-01 11 43349355 43349355 C T API5 Missense_Mutation p.A291V 0.30 deleterious(0.02) possibly_damaging(0.573) TCGA-VQ-A8P2-01 11 44105064 44105064 G A ACCS Missense_Mutation p.E449K 0.44 tolerated(0.29) benign(0.015) TCGA-VQ-A8P2-01 11 44129368 44129368 G A EXT2 Missense_Mutation p.G69S 0.10 tolerated(0.56) benign(0.19) TCGA-VQ-A8P2-01 11 44129662 44129662 C T EXT2 Missense_Mutation p.L167F 0.40 deleterious(0) probably_damaging(0.983) TCGA-VQ-A8P2-01 11 44950747 44950747 C A TSPAN18 3'UTR 0.44 TCGA-VQ-A8P2-01 11 4510588 4510588 G A OR52K1 Missense_Mutation p.R153Q 0.38 deleterious(0) possibly_damaging(0.888) TCGA-VQ-A8P2-01 11 45245959 45245959 T C PRDM11 Missense_Mutation p.S312P 0.34 deleterious_low_confidence(0) probably_damaging(1) TCGA-VQ-A8P2-01 11 45246160 45246160 G A PRDM11 Missense_Mutation p.E379K 0.35 deleterious_low_confidence(0.02) benign(0.098) TCGA-VQ-A8P2-01 11 45671459 45671459 C T CHST1 Missense_Mutation p.D339N 0.26 tolerated(0.41) benign(0.004) TCGA-VQ-A8P2-01 11 45671699 45671699 C T CHST1 Missense_Mutation p.G259S 0.44 tolerated(0.35) benign(0.073) TCGA-VQ-A8P2-01 11 45672100 45672100 C T CHST1 Missense_Mutation p.R125Q 0.35 tolerated(0.56) possibly_damaging(0.845) TCGA-VQ-A8P2-01 11 45948318 45948318 G T GYLTL1B Missense_Mutation p.Q407H 0.21 tolerated(0.15) benign(0.007) TCGA-VQ-A8P2-01 11 45987000 45987000 C T PHF21A Missense_Mutation p.V287I 0.30 tolerated(0.09) probably_damaging(0.993) TCGA-VQ-A8P2-01 11 45991422 45991422 C A PHF21A Missense_Mutation p.V215L 0.14 deleterious(0) probably_damaging(0.992) TCGA-VQ-A8P2-01 11 4621605 4621605 G T TRIM68 Silent p.P453P 0.61 TCGA-VQ-A8P2-01 11 46406737 46406737 G A CHRM4 Silent p.N457N 0.32 TCGA-VQ-A8P2-01 11 46430206 46430206 G A AMBRA1 Missense_Mutation p.A997V 0.31 deleterious_low_confidence(0.04) probably_damaging(0.995) TCGA-VQ-A8P2-01 11 46431837 46431837 G A AMBRA1 Silent p.S976S 0.11 TCGA-VQ-A8P2-01 11 46564453 46564453 T C AMBRA1 Missense_Mutation p.S282G 0.51 deleterious_low_confidence(0) possibly_damaging(0.737) TCGA-VQ-A8P2-01 11 46717604 46717604 C A ARHGAP1 Missense_Mutation p.E18D 0.27 tolerated(0.55) benign(0) TCGA-VQ-A8P2-01 11 46740828 46740828 C T F2 Silent p.L15L 0.38 TCGA-VQ-A8P2-01 11 46810325 46810325 T C CKAP5 Splice_Site p.X626_splice 0.48 TCGA-VQ-A8P2-01 11 46880543 46880543 G A LRP4 Silent p.S1903S 0.37 TCGA-VQ-A8P2-01 11 46894788 46894788 G A LRP4 Intron 0.44 TCGA-VQ-A8P2-01 11 46911974 46911974 C T LRP4 Missense_Mutation p.R590H 0.38 tolerated(0.06) possibly_damaging(0.479) TCGA-VQ-A8P2-01 11 46918463 46918463 G A LRP4 Silent p.D293D 0.34 TCGA-VQ-A8P2-01 11 4703866 4703866 C T OR51E2 Missense_Mutation p.V26I 0.45 tolerated(1) benign(0) TCGA-VQ-A8P2-01 11 47296160 47296160 C T MADD Nonsense_Mutation p.R37* 0.07 TCGA-VQ-A8P2-01 11 47356682 47356682 C T MYBPC3 Missense_Mutation p.R939Q 0.50 deleterious(0.02) probably_damaging(0.934) TCGA-VQ-A8P2-01 11 47360071 47360071 C T MYBPC3 Missense_Mutation p.D770N 0.44 deleterious(0) possibly_damaging(0.751) TCGA-VQ-A8P2-01 11 47603914 47603914 T C NDUFS3 Missense_Mutation p.F174S 0.19 deleterious(0) probably_damaging(0.948) TCGA-VQ-A8P2-01 11 4790244 4790244 G A OR51F1 Missense_Mutation p.R302C 0.40 deleterious(0.02) benign(0.035) TCGA-VQ-A8P2-01 11 48327912 48327912 C T OR4S1 Silent p.T46T 0.33 TCGA-VQ-A8P2-01 11 48510412 48510412 A C OR4A47 Missense_Mutation p.K23T 0.24 deleterious_low_confidence(0.03) benign(0.12) TCGA-VQ-A8P2-01 11 49229938 49229938 G A FOLH1 Silent p.T8T 0.50 TCGA-VQ-A8P2-01 11 49598453 49598453 C T RP11-707M1.1 RNA 0.21 TCGA-VQ-A8P2-01 11 5012629 5012629 G A MMP26 Silent p.G166G 0.39 TCGA-VQ-A8P2-01 11 51515495 51515495 T C OR4C46 Missense_Mutation p.S72P 0.38 deleterious_low_confidence(0.01) benign(0.078) TCGA-VQ-A8P2-01 11 51516089 51516089 G A OR4C46 Missense_Mutation p.A270T 0.39 tolerated_low_confidence(0.21) benign(0.075) TCGA-VQ-A8P2-01 11 5322607 5322607 C T OR51B4 Silent p.T190T 0.50 TCGA-VQ-A8P2-01 11 5373359 5373359 G T OR51B6 Missense_Mutation p.D208Y 0.26 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 11 5510573 5510573 G T OR52D1 Missense_Mutation p.D213Y 0.07 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 11 55111472 55111472 G A OR4A16 Missense_Mutation p.D266N 0.12 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-VQ-A8P2-01 11 55136313 55136313 G A OR4A15 Silent p.K318K 0.40 TCGA-VQ-A8P2-01 11 55321980 55321980 C T OR4C15 Silent p.L66L 0.36 TCGA-VQ-A8P2-01 11 5537194 5537194 G T UBQLNL Missense_Mutation p.H160N 0.45 tolerated(0.77) benign(0.003) TCGA-VQ-A8P2-01 11 55418819 55418819 G - OR4S2 Frame_Shift_Del p.V148* 0.45 TCGA-VQ-A8P2-01 11 55541552 55541552 A G OR5D13 Silent p.L213L 0.33 TCGA-VQ-A8P2-01 11 55563505 55563506 - A OR5D14 Frame_Shift_Ins p.L159Ifs*16 0.08 TCGA-VQ-A8P2-01 11 55653082 55653082 C T TRIM51 Missense_Mutation p.R60W 0.44 tolerated(0.29) benign(0.003) TCGA-VQ-A8P2-01 11 55904701 55904701 G T OR8J3 Missense_Mutation p.S165Y 0.49 deleterious(0.04) possibly_damaging(0.905) TCGA-VQ-A8P2-01 11 5602612 5602612 G A OR52B6 Missense_Mutation p.S169N 0.35 tolerated(0.09) benign(0.187) TCGA-VQ-A8P2-01 11 56043623 56043623 T C OR5T1 Missense_Mutation p.I170T 0.10 tolerated(0.09) benign(0.034) TCGA-VQ-A8P2-01 11 56127849 56127849 C A OR8J1 Missense_Mutation p.L43M 0.11 tolerated(0.05) benign(0.21) TCGA-VQ-A8P2-01 11 56143693 56143693 G T OR8U1 Missense_Mutation p.W198C 0.13 deleterious(0) probably_damaging(0.971) TCGA-VQ-A8P2-01 11 56237407 56237407 C A OR5M3 Silent p.G189G 0.32 TCGA-VQ-A8P2-01 11 5625799 5625799 C T TRIM6 Silent p.N181N 0.30 TCGA-VQ-A8P2-01 11 5632396 5632396 C T TRIM6 Missense_Mutation p.R459C 0.06 tolerated(0.32) benign(0.018) TCGA-VQ-A8P2-01 11 56344248 56344248 G A OR5M10 3'UTR 0.24 TCGA-VQ-A8P2-01 11 56344882 56344882 C T OR5M10 Missense_Mutation p.A106T 0.37 tolerated(0.45) benign(0.022) TCGA-VQ-A8P2-01 11 56431350 56431350 C T OR5AR1 Silent p.L63L 0.36 TCGA-VQ-A8P2-01 11 56431497 56431497 C A OR5AR1 Nonsense_Mutation p.C112* 0.34 TCGA-VQ-A8P2-01 11 57088127 57088127 C A TNKS1BP1 Missense_Mutation p.A52S 0.22 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 11 57175275 57175275 G A SLC43A3 Missense_Mutation p.A489V 0.41 tolerated_low_confidence(0.16) benign(0.002) TCGA-VQ-A8P2-01 11 57185345 57185345 C T SLC43A3 Missense_Mutation p.G183S 0.40 tolerated(0.06) probably_damaging(0.937) TCGA-VQ-A8P2-01 11 57268767 57268767 G A SLC43A1 Missense_Mutation p.R64C 0.31 tolerated(0.06) benign(0.205) TCGA-VQ-A8P2-01 11 57428753 57428753 G A CLP1 Missense_Mutation p.E375K 0.27 tolerated(0.06) possibly_damaging(0.47) TCGA-VQ-A8P2-01 11 57505491 57505491 C A TMX2 Silent p.L119L 0.09 TCGA-VQ-A8P2-01 11 57569620 57569620 C T CTNND1 Nonsense_Mutation p.R458* 0.09 TCGA-VQ-A8P2-01 11 57573382 57573382 G A CTNND1 Missense_Mutation p.R584Q 0.45 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 11 57798745 57798745 C A OR6Q1 Silent p.I107I 0.43 TCGA-VQ-A8P2-01 11 57886332 57886332 G A OR9I1 Silent p.I195I 0.33 TCGA-VQ-A8P2-01 11 57947717 57947717 G A OR9Q1 Silent p.S267S 0.34 TCGA-VQ-A8P2-01 11 57970844 57970844 G A OR1S2 Silent p.G270G 0.24 TCGA-VQ-A8P2-01 11 57996231 57996231 G T OR10Q1 Nonsense_Mutation p.Y39* 0.49 TCGA-VQ-A8P2-01 11 58126055 58126055 C T OR5B17 Missense_Mutation p.R163H 0.29 tolerated_low_confidence(0.16) benign(0.028) TCGA-VQ-A8P2-01 11 58189993 58189993 C T OR5B2 Missense_Mutation p.V248I 0.27 tolerated_low_confidence(1) benign(0.001) TCGA-VQ-A8P2-01 11 58275220 58275220 C T OR5B21 Missense_Mutation p.R120H 0.38 deleterious_low_confidence(0.02) benign(0.002) TCGA-VQ-A8P2-01 11 58722657 58722657 G T GLYATL1 Nonsense_Mutation p.E139* 0.39 TCGA-VQ-A8P2-01 11 58949244 58949244 G A DTX4 Missense_Mutation p.D82N 0.43 tolerated(0.08) benign(0.066) TCGA-VQ-A8P2-01 11 58949902 58949902 C T DTX4 Missense_Mutation p.A301V 0.25 tolerated(0.13) benign(0.009) TCGA-VQ-A8P2-01 11 59282986 59282986 T G OR4D9 Missense_Mutation p.S201A 0.42 tolerated(0.2) possibly_damaging(0.734) TCGA-VQ-A8P2-01 11 59345672 59345672 G T OSBP Silent p.G670G 0.42 TCGA-VQ-A8P2-01 11 59368826 59368826 C T OSBP Missense_Mutation p.D352N 0.42 deleterious(0.04) probably_damaging(0.951) TCGA-VQ-A8P2-01 11 59369204 59369204 C T OSBP Silent p.Q310Q 0.53 TCGA-VQ-A8P2-01 11 59560948 59560948 C T STX3 Silent p.H212H 0.34 TCGA-VQ-A8P2-01 11 59596913 59596913 C T GIF 3'UTR 0.39 TCGA-VQ-A8P2-01 11 59626553 59626553 C T TCN1 Missense_Mutation p.M248I 0.09 deleterious(0.01) possibly_damaging(0.63) TCGA-VQ-A8P2-01 11 59807875 59807875 G A OOSP2 5'UTR 0.45 TCGA-VQ-A8P2-01 11 59807909 59807909 A G OOSP2 5'UTR 0.17 TCGA-VQ-A8P2-01 11 59940449 59940449 C T MS4A6A 3'UTR 0.38 TCGA-VQ-A8P2-01 11 60231793 60231793 G A MS4A1 Silent p.T104T 0.23 TCGA-VQ-A8P2-01 11 60531251 60531251 G A MS4A15 Silent p.P15P 0.50 TCGA-VQ-A8P2-01 11 60558465 60558465 G A MS4A10 Missense_Mutation p.A68T 0.37 deleterious(0) possibly_damaging(0.764) TCGA-VQ-A8P2-01 11 60666653 60666653 C T PRPF19 Missense_Mutation p.G318S 0.55 deleterious(0.01) probably_damaging(0.998) TCGA-VQ-A8P2-01 11 60688366 60688366 C T TMEM109 Silent p.S82S 0.37 TCGA-VQ-A8P2-01 11 60689421 60689421 C T TMEM109 Silent p.F172F 0.41 TCGA-VQ-A8P2-01 11 60689457 60689457 C T TMEM109 Silent p.T184T 0.41 TCGA-VQ-A8P2-01 11 608885 608885 C T PHRF1 Silent p.H1142H 0.16 TCGA-VQ-A8P2-01 11 609248 609248 C A PHRF1 Silent p.S1263S 0.11 TCGA-VQ-A8P2-01 11 61070547 61070547 G T DDB1 Silent p.A971A 0.29 TCGA-VQ-A8P2-01 11 61111622 61111622 C T DAK Missense_Mutation p.R373W 0.46 tolerated(0.07) benign(0.368) TCGA-VQ-A8P2-01 11 612697 612697 C T IRF7 Missense_Mutation p.S500N 0.43 tolerated(0.12) probably_damaging(0.999) TCGA-VQ-A8P2-01 11 61502473 61502473 C T DAGLA Missense_Mutation p.A376V 0.43 tolerated(0.18) benign(0.203) TCGA-VQ-A8P2-01 11 61511915 61511915 G A DAGLA Missense_Mutation p.G1028E 0.38 tolerated_low_confidence(0.09) benign(0.009) TCGA-VQ-A8P2-01 11 61545905 61545905 G A MYRF Missense_Mutation p.G653R 0.09 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 11 61563308 61563308 G A FEN1 Missense_Mutation p.A159T 0.34 deleterious(0) probably_damaging(0.992) TCGA-VQ-A8P2-01 11 61580808 61580808 G A FADS1 Silent p.F131F 0.45 TCGA-VQ-A8P2-01 11 620332 620332 C T CDHR5 Missense_Mutation p.G282S 0.10 deleterious(0.04) benign(0.052) TCGA-VQ-A8P2-01 11 62159699 62159699 C T ASRGL1 Silent p.D290D 0.58 TCGA-VQ-A8P2-01 11 62190531 62190532 - A SCGB1A1 Frame_Shift_Ins p.I84Nfs*8 0.29 TCGA-VQ-A8P2-01 11 6220760 6220760 C A OR52W1 Missense_Mutation p.L103M 0.29 deleterious(0) probably_damaging(0.933) TCGA-VQ-A8P2-01 11 62291860 62291860 G A AHNAK Silent p.I3343I 0.33 TCGA-VQ-A8P2-01 11 62343213 62343213 T - TUT1 Frame_Shift_Del p.R698Dfs*4 0.13 TCGA-VQ-A8P2-01 11 62362899 62362899 G A MTA2 Silent p.S440S 0.37 TCGA-VQ-A8P2-01 11 62415050 62415050 C A INTS5 Missense_Mutation p.E834D 0.43 deleterious(0.03) probably_damaging(0.994) TCGA-VQ-A8P2-01 11 62415086 62415086 G A INTS5 Silent p.P822P 0.31 TCGA-VQ-A8P2-01 11 62490296 62490296 C T HNRNPUL2 Missense_Mutation p.R324H 0.24 tolerated(0.2) benign(0.001) TCGA-VQ-A8P2-01 11 62606900 62606900 C T WDR74 Missense_Mutation p.G22E 0.42 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 11 6261645 6261645 G A CNGA4 Silent p.A207A 0.32 TCGA-VQ-A8P2-01 11 62623075 62623075 G T SLC3A2 5'Flank 0.35 TCGA-VQ-A8P2-01 11 62652802 62652802 C T SLC3A2 Silent p.A426A 0.09 TCGA-VQ-A8P2-01 11 6291536 6291536 C T CCKBR Missense_Mutation p.R208C 0.41 tolerated(0.09) possibly_damaging(0.717) TCGA-VQ-A8P2-01 11 63057858 63057858 G A SLC22A10 Missense_Mutation p.R74K 0.29 tolerated(0.1) benign(0.13) TCGA-VQ-A8P2-01 11 63071676 63071676 C T SLC22A10 Missense_Mutation p.P461L 0.33 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 11 63175629 63175629 C T SLC22A9 Missense_Mutation p.A445V 0.56 tolerated(0.71) benign(0.022) TCGA-VQ-A8P2-01 11 63585720 63585720 G A C11orf84 Missense_Mutation p.A164T 0.30 tolerated_low_confidence(0.14) benign(0.009) TCGA-VQ-A8P2-01 11 63594446 63594446 C T C11orf84 Silent p.R327R 0.45 TCGA-VQ-A8P2-01 11 63974972 63974972 C T FERMT3 Missense_Mutation p.L46F 0.49 deleterious(0.01) benign(0.039) TCGA-VQ-A8P2-01 11 63978220 63978220 G A FERMT3 Missense_Mutation p.V100I 0.39 tolerated(0.15) benign(0.001) TCGA-VQ-A8P2-01 11 64012158 64012158 C A PPP1R14B 3'UTR 0.39 TCGA-VQ-A8P2-01 11 64027588 64027588 T C PLCB3 Missense_Mutation p.L538P 0.40 tolerated(0.19) probably_damaging(0.927) TCGA-VQ-A8P2-01 11 64119678 64119678 C T CCDC88B Missense_Mutation p.A1059V 0.48 tolerated(0.26) benign(0.009) TCGA-VQ-A8P2-01 11 6412632 6412632 C T SMPD1 Missense_Mutation p.R113C 0.43 deleterious(0.02) possibly_damaging(0.761) TCGA-VQ-A8P2-01 11 64137050 64137050 C T RPS6KA4 Missense_Mutation p.H521Y 0.50 deleterious(0.01) possibly_damaging(0.901) TCGA-VQ-A8P2-01 11 64397968 64397968 G A NRXN2 Silent p.S1221S 0.32 TCGA-VQ-A8P2-01 11 64397982 64397982 T C NRXN2 Missense_Mutation p.N1217D 0.41 tolerated(0.19) probably_damaging(0.965) TCGA-VQ-A8P2-01 11 64434746 64434746 C T NRXN2 Missense_Mutation p.D592N 0.19 deleterious(0.01) benign(0.03) TCGA-VQ-A8P2-01 11 64514053 64514053 C T PYGM 3'UTR 0.41 TCGA-VQ-A8P2-01 11 64537496 64537496 A T SF1 Missense_Mutation p.V265D 0.32 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8P2-01 11 64570355 64570355 A G MAP4K2 Splice_Site p.X52_splice 0.20 TCGA-VQ-A8P2-01 11 64622863 64622863 C A EHD1 Missense_Mutation p.E337D 0.36 tolerated(0.29) benign(0.003) TCGA-VQ-A8P2-01 11 64645589 64645589 C T EHD1 Silent p.V116V 0.36 TCGA-VQ-A8P2-01 11 64675234 64675234 C A ATG2A Missense_Mutation p.E831D 0.41 deleterious(0.01) probably_damaging(0.972) TCGA-VQ-A8P2-01 11 6478232 6478232 G A TRIM3 Missense_Mutation p.R242C 0.32 tolerated(0.11) possibly_damaging(0.634) TCGA-VQ-A8P2-01 11 64794938 64794938 G A SNX15 5'UTR 0.33 TCGA-VQ-A8P2-01 11 64813985 64813985 G A NAALADL1 Missense_Mutation p.A538V 0.12 tolerated(0.47) benign(0.241) TCGA-VQ-A8P2-01 11 64950647 64950647 G A CAPN1 Missense_Mutation p.D106N 0.08 deleterious(0) probably_damaging(0.992) TCGA-VQ-A8P2-01 11 64981441 64981441 T C CAPN1 3'Flank 0.45 TCGA-VQ-A8P2-01 11 6500449 6500449 C T ARFIP2 Missense_Mutation p.G79D 0.16 tolerated(0.36) benign(0.021) TCGA-VQ-A8P2-01 11 6520123 6520123 C T DNHD1 Silent p.I226I 0.18 TCGA-VQ-A8P2-01 11 65315007 65315007 G A LTBP3 Silent p.C670C 0.15 TCGA-VQ-A8P2-01 11 65347694 65347694 C T EHBP1L1 Missense_Mutation p.T152I 0.11 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 11 65408924 65408924 G A SIPA1 Missense_Mutation p.G178S 0.34 tolerated(0.35) possibly_damaging(0.493) TCGA-VQ-A8P2-01 11 65427624 65427624 C T RELA Missense_Mutation p.R133H 0.42 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 11 65480128 65480128 C T KAT5 Intron 0.69 TCGA-VQ-A8P2-01 11 65617442 65617442 G A SNX32 Missense_Mutation p.E65K 0.37 deleterious(0) benign(0.054) TCGA-VQ-A8P2-01 11 65620217 65620217 G A SNX32 Silent p.L343L 0.54 TCGA-VQ-A8P2-01 11 65655078 65655078 C T FIBP Missense_Mutation p.R135Q 0.18 deleterious(0.01) probably_damaging(0.933) TCGA-VQ-A8P2-01 11 65733854 65733854 G A SART1 Missense_Mutation p.E339K 0.09 deleterious(0) probably_damaging(0.993) TCGA-VQ-A8P2-01 11 65780303 65780303 G A CST6 Missense_Mutation p.A83T 0.41 tolerated(0.09) possibly_damaging(0.888) TCGA-VQ-A8P2-01 11 65793490 65793490 G A CATSPER1 Missense_Mutation p.R121C 0.33 tolerated(0.06) benign(0.142) TCGA-VQ-A8P2-01 11 65829424 65829424 G A SF3B2 Silent p.S644S 0.29 TCGA-VQ-A8P2-01 11 66030338 66030338 C T KLC2 Missense_Mutation p.P195S 0.36 deleterious(0.02) probably_damaging(0.99) TCGA-VQ-A8P2-01 11 66052850 66052850 A G YIF1A Splice_Site p.X214_splice 0.36 TCGA-VQ-A8P2-01 11 66055105 66055105 G - YIF1A Frame_Shift_Del p.R131Gfs*50 0.30 TCGA-VQ-A8P2-01 11 66083735 66083735 G A CD248 Missense_Mutation p.S255F 0.21 tolerated(0.2) possibly_damaging(0.759) TCGA-VQ-A8P2-01 11 66101112 66101112 C T RIN1 Missense_Mutation p.D537N 0.22 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 11 66102528 66102528 G A RIN1 Missense_Mutation p.R248C 0.40 deleterious(0.02) probably_damaging(0.998) TCGA-VQ-A8P2-01 11 6621764 6621764 T C RRP8 Silent p.R401R 0.15 TCGA-VQ-A8P2-01 11 66276557 66276557 C T DPP3 Silent p.D683D 0.43 TCGA-VQ-A8P2-01 11 66291309 66291309 C T BBS1 Missense_Mutation p.R356C 0.35 tolerated(0.06) probably_damaging(0.959) TCGA-VQ-A8P2-01 11 66323656 66323656 G A CTD-3074O7.2 3'Flank 0.12 TCGA-VQ-A8P2-01 11 66325642 66325642 C T CTD-3074O7.2 3'Flank 0.26 TCGA-VQ-A8P2-01 11 66330286 66330286 G A CTSF 3'Flank 0.36 TCGA-VQ-A8P2-01 11 66367070 66367070 G A CCS Missense_Mutation p.V131I 0.42 tolerated(0.66) benign(0.03) TCGA-VQ-A8P2-01 11 66454600 66454600 C A SPTBN2 Missense_Mutation p.S2254I 0.30 deleterious(0.04) benign(0.238) TCGA-VQ-A8P2-01 11 66466985 66466985 G A SPTBN2 Missense_Mutation p.A1223V 0.31 deleterious(0.03) possibly_damaging(0.715) TCGA-VQ-A8P2-01 11 6646709 6646709 G A DCHS1 Missense_Mutation p.A2289V 0.32 tolerated(0.12) benign(0.008) TCGA-VQ-A8P2-01 11 66472291 66472291 C T SPTBN2 Missense_Mutation p.R819H 0.47 tolerated(0.12) benign(0.001) TCGA-VQ-A8P2-01 11 66478498 66478498 C T SPTBN2 Missense_Mutation p.V259M 0.21 deleterious(0) probably_damaging(0.988) TCGA-VQ-A8P2-01 11 6650708 6650708 C A DCHS1 Missense_Mutation p.E1712D 0.50 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 11 6651075 6651075 G T DCHS1 Silent p.A1621A 0.39 TCGA-VQ-A8P2-01 11 6651763 6651763 C T DCHS1 Missense_Mutation p.R1421Q 0.45 tolerated(0.4) benign(0.008) TCGA-VQ-A8P2-01 11 6651888 6651888 G A DCHS1 Silent p.F1379F 0.25 TCGA-VQ-A8P2-01 11 6653374 6653374 G A DCHS1 Silent p.S1123S 0.47 TCGA-VQ-A8P2-01 11 6655446 6655446 C T DCHS1 Missense_Mutation p.R630H 0.29 deleterious(0.02) benign(0.003) TCGA-VQ-A8P2-01 11 66617221 66617221 G A PC Missense_Mutation p.T1003M 0.35 deleterious(0) possibly_damaging(0.596) TCGA-VQ-A8P2-01 11 66620004 66620004 C T PC Silent p.L577L 0.29 TCGA-VQ-A8P2-01 11 66626461 66626461 G A LRFN4 Missense_Mutation p.A416T 0.16 tolerated(0.24) benign(0.252) TCGA-VQ-A8P2-01 11 66633820 66633820 G A PC Silent p.D341D 0.56 TCGA-VQ-A8P2-01 11 67049408 67049408 C A ADRBK1 Silent p.V314V 0.37 TCGA-VQ-A8P2-01 11 67172869 67172869 G T TBC1D10C Splice_Site p.X85_splice 0.17 TCGA-VQ-A8P2-01 11 67177159 67177159 C - TBC1D10C Frame_Shift_Del p.I428Sfs*126 0.54 TCGA-VQ-A8P2-01 11 67266279 67266279 G A PITPNM1 Silent p.C424C 0.11 TCGA-VQ-A8P2-01 11 67410140 67410140 C T ACY3 3'UTR 0.19 TCGA-VQ-A8P2-01 11 67926116 67926116 C T SUV420H1 Missense_Mutation p.S566N 0.17 tolerated_low_confidence(0.65) benign(0.001) TCGA-VQ-A8P2-01 11 67942634 67942634 C A SUV420H1 Nonsense_Mutation p.G132* 0.38 TCGA-VQ-A8P2-01 11 6806614 6806614 G A OR2AG1 Missense_Mutation p.A116T 0.42 deleterious(0.02) possibly_damaging(0.45) TCGA-VQ-A8P2-01 11 6816359 6816359 C T OR6A2 Missense_Mutation p.C194Y 0.35 deleterious(0.02) probably_damaging(1) TCGA-VQ-A8P2-01 11 68343484 68343487 AACT - PPP6R3 Frame_Shift_Del p.N508Rfs*5 0.40 TCGA-VQ-A8P2-01 11 68517721 68517721 C T MTL5 Silent p.A136A 0.55 TCGA-VQ-A8P2-01 11 68522359 68522359 G A CPT1A 3'UTR 0.32 TCGA-VQ-A8P2-01 11 68566684 68566684 A G CPT1A Splice_Site p.X231_splice 0.32 TCGA-VQ-A8P2-01 11 68704218 68704218 G A IGHMBP2 Missense_Mutation p.R757Q 0.39 tolerated(0.09) benign(0.015) TCGA-VQ-A8P2-01 11 688031 688031 C T DEAF1 Missense_Mutation p.A182T 0.19 tolerated(0.93) benign(0.003) TCGA-VQ-A8P2-01 11 69457841 69457841 G A CCND1 Missense_Mutation p.A81T 0.24 deleterious(0) benign(0.069) TCGA-VQ-A8P2-01 11 69482222 69482222 G A ORAOV1 3'UTR 0.56 TCGA-VQ-A8P2-01 11 69995855 69995855 G A ANO1 Missense_Mutation p.R433Q 0.39 deleterious(0.04) probably_damaging(0.975) TCGA-VQ-A8P2-01 11 7022217 7022217 G A ZNF214 Missense_Mutation p.R233W 0.32 deleterious(0.02) benign(0.01) TCGA-VQ-A8P2-01 11 7023986 7023986 G T ZNF214 Silent p.L27L 0.35 TCGA-VQ-A8P2-01 11 70275241 70275241 C T CTTN Missense_Mutation p.A334V 0.08 tolerated(0.07) probably_damaging(0.994) TCGA-VQ-A8P2-01 11 70275270 70275270 C T CTTN Missense_Mutation p.R344W 0.31 deleterious(0) possibly_damaging(0.794) TCGA-VQ-A8P2-01 11 70282492 70282492 C A CTTN Missense_Mutation p.T628N 0.21 deleterious_low_confidence(0) benign(0.001) TCGA-VQ-A8P2-01 11 7064950 7064950 G A NLRP14 Missense_Mutation p.E565K 0.45 tolerated(0.19) benign(0.129) TCGA-VQ-A8P2-01 11 7111046 7111046 C T RBMXL2 Missense_Mutation p.A232V 0.39 tolerated(0.1) possibly_damaging(0.483) TCGA-VQ-A8P2-01 11 7111315 7111315 G A RBMXL2 Missense_Mutation p.G322S 0.46 tolerated(0.59) benign(0) TCGA-VQ-A8P2-01 11 71209416 71209416 C T NADSYN1 Missense_Mutation p.R638W 0.14 tolerated(0.1) benign(0.001) TCGA-VQ-A8P2-01 11 71712474 71712474 C T IL18BP Missense_Mutation p.T128M 0.17 deleterious(0) probably_damaging(0.988) TCGA-VQ-A8P2-01 11 71720050 71720050 C T NUMA1 Missense_Mutation p.R1674H 0.33 probably_damaging(0.944) TCGA-VQ-A8P2-01 11 71729316 71729316 C T NUMA1 Silent p.K297K 0.36 TCGA-VQ-A8P2-01 11 71903360 71903360 G A FOLR1 Missense_Mutation p.G48D 0.34 deleterious(0) possibly_damaging(0.899) TCGA-VQ-A8P2-01 11 72004515 72004515 G A CLPB Missense_Mutation p.R674C 0.35 deleterious_low_confidence(0) possibly_damaging(0.772) TCGA-VQ-A8P2-01 11 72423491 72423491 G A ARAP1 Silent p.G290G 0.36 TCGA-VQ-A8P2-01 11 72537221 72537221 G A ATG16L2 Missense_Mutation p.R369H 0.21 tolerated(0.09) benign(0.046) TCGA-VQ-A8P2-01 11 73020723 73020723 G A ARHGEF17 Missense_Mutation p.G347D 0.41 tolerated_low_confidence(0.06) benign(0.018) TCGA-VQ-A8P2-01 11 73021346 73021346 G T ARHGEF17 Missense_Mutation p.A555S 0.31 tolerated_low_confidence(0.28) benign(0.002) TCGA-VQ-A8P2-01 11 73021350 73021350 G A ARHGEF17 Missense_Mutation p.R556H 0.12 deleterious_low_confidence(0.04) benign(0) TCGA-VQ-A8P2-01 11 73066583 73066583 C T ARHGEF17 Silent p.S1153S 0.14 TCGA-VQ-A8P2-01 11 73076594 73076594 C T ARHGEF17 Missense_Mutation p.H1904Y 0.24 deleterious(0.04) probably_damaging(0.947) TCGA-VQ-A8P2-01 11 73676057 73676057 A - DNAJB13 Frame_Shift_Del p.I159Lfs*8 0.35 TCGA-VQ-A8P2-01 11 73681282 73681282 G A DNAJB13 3'UTR 0.57 TCGA-VQ-A8P2-01 11 73687897 73687897 C T UCP2 Missense_Mutation p.R168Q 0.33 tolerated(0.11) benign(0.034) TCGA-VQ-A8P2-01 11 73714925 73714925 G A UCP3 Silent p.L257L 0.43 TCGA-VQ-A8P2-01 11 74556176 74556176 G A XRRA1 Silent p.Y615Y 0.37 TCGA-VQ-A8P2-01 11 74632266 74632266 C T XRRA1 Missense_Mutation p.A209T 0.08 tolerated(0.7) benign(0.002) TCGA-VQ-A8P2-01 11 74800064 74800064 C T OR2AT4 Missense_Mutation p.R232H 0.45 tolerated(0.16) benign(0.009) TCGA-VQ-A8P2-01 11 74800379 74800379 C T OR2AT4 Missense_Mutation p.R127H 0.31 deleterious(0.01) benign(0.364) TCGA-VQ-A8P2-01 11 75146621 75146621 G A GDPD5 Silent p.T583T 0.43 TCGA-VQ-A8P2-01 11 7530923 7530923 A C OLFML1 Missense_Mutation p.K238T 0.33 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 11 75438609 75438609 G A MOGAT2 Missense_Mutation p.G134S 0.19 deleterious(0.02) possibly_damaging(0.775) TCGA-VQ-A8P2-01 11 76257025 76257025 C A C11orf30 Missense_Mutation p.S1153Y 0.31 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-VQ-A8P2-01 11 7663610 7663610 C T PPFIBP2 Silent p.T533T 0.38 TCGA-VQ-A8P2-01 11 76751144 76751144 C T B3GNT6 Silent p.G183G 0.10 TCGA-VQ-A8P2-01 11 76826504 76826504 G A CAPN5 Missense_Mutation p.A255T 0.46 tolerated(0.3) benign(0.176) TCGA-VQ-A8P2-01 11 7687770 7687770 A G CYB5R2 Silent p.D190D 0.32 TCGA-VQ-A8P2-01 11 76982269 76982269 C A GDPD4 Splice_Site p.X103_splice 0.41 TCGA-VQ-A8P2-01 11 77413453 77413453 G A RSF1 Missense_Mutation p.T274I 0.35 deleterious(0.04) benign(0.157) TCGA-VQ-A8P2-01 11 77672142 77672142 G A INTS4 Nonsense_Mutation p.Q172* 0.08 TCGA-VQ-A8P2-01 11 77774918 77774918 G T THRSP 5'UTR 0.22 TCGA-VQ-A8P2-01 11 77884868 77884868 C T KCTD21 Missense_Mutation p.A245T 0.47 tolerated(0.1) benign(0) TCGA-VQ-A8P2-01 11 77907405 77907405 C T USP35 Silent p.C38C 0.41 TCGA-VQ-A8P2-01 11 78277239 78277239 A G NARS2 Missense_Mutation p.V151A 0.32 tolerated(0.3) benign(0.001) TCGA-VQ-A8P2-01 11 78380693 78380693 G A TENM4 Missense_Mutation p.R2233W 0.39 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 11 78399127 78399127 G T TENM4 Silent p.A1744A 0.34 TCGA-VQ-A8P2-01 11 78443581 78443581 C T TENM4 Missense_Mutation p.R973Q 0.40 tolerated(0.79) benign(0.004) TCGA-VQ-A8P2-01 11 7847186 7847186 A G OR5P3 Missense_Mutation p.C112R 0.27 deleterious(0) possibly_damaging(0.646) TCGA-VQ-A8P2-01 11 7984946 7984946 G A NLRP10 Missense_Mutation p.R33W 0.24 tolerated(0.07) benign(0.025) TCGA-VQ-A8P2-01 11 8111727 8111728 - C TUB Frame_Shift_Ins p.L125Pfs*55 0.32 TCGA-VQ-A8P2-01 11 823534 823534 G A PNPLA2 Missense_Mutation p.R235Q 0.43 tolerated(0.22) benign(0.042) TCGA-VQ-A8P2-01 11 82876823 82876823 G A PCF11 Missense_Mutation p.R295Q 0.60 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 11 82935914 82935914 G A ANKRD42 Missense_Mutation p.E174K 0.16 deleterious(0.03) probably_damaging(0.999) TCGA-VQ-A8P2-01 11 83673939 83673939 G A DLG2 Silent p.D443D 0.09 TCGA-VQ-A8P2-01 11 850341 850341 A G TSPAN4 Missense_Mutation p.M13V 0.60 tolerated(0.08) benign(0.063) TCGA-VQ-A8P2-01 11 85692953 85692953 G T PICALM Missense_Mutation p.S537Y 0.16 deleterious(0.01) possibly_damaging(0.474) TCGA-VQ-A8P2-01 11 85979574 85979574 C T EED Nonsense_Mutation p.R313* 0.36 TCGA-VQ-A8P2-01 11 86048522 86048522 C T C11orf73 Nonsense_Mutation p.Q124* 0.42 TCGA-VQ-A8P2-01 11 86131078 86131078 G T CCDC81 Missense_Mutation p.E600D 0.09 tolerated(0.05) benign(0.311) TCGA-VQ-A8P2-01 11 86161400 86161400 C T ME3 Silent p.L320L 0.42 TCGA-VQ-A8P2-01 11 86270840 86270841 - T ME3 Frame_Shift_Ins p.R70Kfs*34 0.21 TCGA-VQ-A8P2-01 11 88042372 88042372 A G CTSC Silent p.D200D 0.34 TCGA-VQ-A8P2-01 11 88300672 88300672 G A GRM5 Nonsense_Mutation p.R727* 0.28 TCGA-VQ-A8P2-01 11 88338063 88338063 G A GRM5 Missense_Mutation p.S406L 0.36 deleterious(0) possibly_damaging(0.756) TCGA-VQ-A8P2-01 11 88386483 88386483 C T GRM5 Missense_Mutation p.V334I 0.32 tolerated(0.09) probably_damaging(0.992) TCGA-VQ-A8P2-01 11 89075247 89075247 G A NOX4 Silent p.T444T 0.47 TCGA-VQ-A8P2-01 11 89223785 89223785 G T NOX4 Intron 0.38 TCGA-VQ-A8P2-01 11 89431597 89431597 A G FOLH1B RNA 0.40 TCGA-VQ-A8P2-01 11 8959657 8959657 G A ASCL3 Missense_Mutation p.P18S 0.27 tolerated(1) benign(0.001) TCGA-VQ-A8P2-01 11 8969962 8969962 C T TMEM9B Missense_Mutation p.V168M 0.46 tolerated(0.09) benign(0.088) TCGA-VQ-A8P2-01 11 89914787 89914787 G T NAALAD2 Splice_Site p.X620_splice 0.42 TCGA-VQ-A8P2-01 11 9049026 9049026 G A SCUBE2 Silent p.T805T 0.31 TCGA-VQ-A8P2-01 11 9055268 9055268 T - SCUBE2 Intron 0.31 TCGA-VQ-A8P2-01 11 9166555 9166555 C A DENND5A Nonsense_Mutation p.G1037* 0.29 TCGA-VQ-A8P2-01 11 92531126 92531126 G A FAT3 Silent p.P1649P 0.28 TCGA-VQ-A8P2-01 11 92531786 92531786 C T FAT3 Silent p.V1869V 0.44 TCGA-VQ-A8P2-01 11 92590392 92590392 C T FAT3 Missense_Mutation p.P3793L 0.35 benign(0.425) TCGA-VQ-A8P2-01 11 92703045 92703045 G A MTNR1B Missense_Mutation p.A52T 0.19 tolerated(0.06) benign(0.009) TCGA-VQ-A8P2-01 11 93466672 93466672 C T KIAA1731 3'Flank 0.33 TCGA-VQ-A8P2-01 11 93492964 93492964 G A C11orf54 Silent p.L188L 0.37 TCGA-VQ-A8P2-01 11 93494710 93494710 T - C11orf54 Frame_Shift_Del p.F220Lfs*18 0.31 TCGA-VQ-A8P2-01 11 93526992 93526992 C A MED17 Missense_Mutation p.Q246K 0.27 tolerated(1) benign(0.009) TCGA-VQ-A8P2-01 11 93754618 93754618 G A HEPHL1 Silent p.T28T 0.07 TCGA-VQ-A8P2-01 11 94040768 94040768 C T FOLR4 Silent p.A214A 0.38 TCGA-VQ-A8P2-01 11 94126727 94126727 C T GPR83 Missense_Mutation p.A191T 0.46 tolerated(0.4) benign(0.008) TCGA-VQ-A8P2-01 11 94316686 94316686 C T PIWIL4 Missense_Mutation p.P196S 0.46 tolerated(0.14) benign(0.002) TCGA-VQ-A8P2-01 11 94335140 94335141 - A PIWIL4 Frame_Shift_Ins p.I522Nfs*13 0.24 TCGA-VQ-A8P2-01 11 94730922 94730922 G A KDM4D Missense_Mutation p.R129H 0.33 deleterious(0.03) possibly_damaging(0.527) TCGA-VQ-A8P2-01 11 94731513 94731513 G A KDM4D Missense_Mutation p.R326H 0.31 deleterious(0.03) probably_damaging(0.949) TCGA-VQ-A8P2-01 11 94759580 94759580 G A KDM4E Missense_Mutation p.A287T 0.39 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 11 95546215 95546215 C A CEP57 Missense_Mutation p.L108M 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A8P2-01 11 95825076 95825076 C T MAML2 Missense_Mutation p.V707I 0.31 unknown(0) TCGA-VQ-A8P2-01 11 95826406 95826406 C A MAML2 Missense_Mutation p.K263N 0.22 probably_damaging(0.997) TCGA-VQ-A8P2-01 11 9608399 9608400 - A WEE1 Frame_Shift_Ins p.E597Rfs*13 0.33 TCGA-VQ-A8P2-01 11 96098232 96098232 C T CCDC82 Missense_Mutation p.R431H 0.45 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 11 96116610 96116610 T C CCDC82 Missense_Mutation p.S272G 0.31 tolerated(0.18) benign(0.003) TCGA-VQ-A8P2-01 11 99827550 99827550 G A CNTN5 Missense_Mutation p.S229N 0.46 deleterious(0.02) probably_damaging(0.999) TCGA-VQ-A8P2-01 11 99827603 99827603 A G CNTN5 Missense_Mutation p.I247V 0.40 tolerated(1) probably_damaging(0.998) TCGA-VQ-A8P2-01 12 100048934 100048934 C A ANKS1B Missense_Mutation p.D395Y 0.47 deleterious(0.03) benign(0.17) TCGA-VQ-A8P2-01 12 100708311 100708311 T C SCYL2 Silent p.F338F 0.42 TCGA-VQ-A8P2-01 12 100732403 100732403 C T SCYL2 Missense_Mutation p.S748F 0.52 deleterious(0.01) benign(0.309) TCGA-VQ-A8P2-01 12 100904745 100904745 G A NR1H4 Missense_Mutation p.R100H 0.11 deleterious(0.02) possibly_damaging(0.556) TCGA-VQ-A8P2-01 12 101368646 101368646 G A ANO4 Missense_Mutation p.R159H 0.44 tolerated(0.18) benign(0.417) TCGA-VQ-A8P2-01 12 101477465 101477465 C T ANO4 Nonsense_Mutation p.R434* 0.39 TCGA-VQ-A8P2-01 12 101490409 101490409 G A ANO4 Missense_Mutation p.A577T 0.36 deleterious(0.01) possibly_damaging(0.84) TCGA-VQ-A8P2-01 12 10149517 10149517 T C CLEC1B Silent p.T122T 0.46 TCGA-VQ-A8P2-01 12 101505407 101505407 C T ANO4 Missense_Mutation p.A755V 0.10 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 12 101584282 101584282 C T SLC5A8 Missense_Mutation p.R266K 0.57 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 12 101603423 101603423 G A SLC5A8 Silent p.A68A 0.31 TCGA-VQ-A8P2-01 12 101720872 101720872 C T UTP20 Nonsense_Mutation p.R1019* 0.39 TCGA-VQ-A8P2-01 12 101750391 101750391 C T UTP20 Silent p.V1818V 0.46 TCGA-VQ-A8P2-01 12 101768586 101768586 C T UTP20 Missense_Mutation p.R2378C 0.41 tolerated(0.08) benign(0.205) TCGA-VQ-A8P2-01 12 101876668 101876668 G - SPIC Frame_Shift_Del p.G105Efs*29 0.27 TCGA-VQ-A8P2-01 12 102071966 102071966 A G MYBPC1 Missense_Mutation p.I1059V 0.35 tolerated(1) benign(0.006) TCGA-VQ-A8P2-01 12 10217392 10217392 C A CLEC9A Missense_Mutation p.S178Y 0.15 tolerated(0.18) benign(0.075) TCGA-VQ-A8P2-01 12 10241747 10241747 C A CLEC1A Missense_Mutation p.G64W 0.27 deleterious(0) probably_damaging(0.989) TCGA-VQ-A8P2-01 12 102590943 102590943 C T PMCH Missense_Mutation p.G86S 0.35 deleterious(0.01) benign(0.26) TCGA-VQ-A8P2-01 12 102590991 102590991 G A PARPBP 3'Flank 0.38 TCGA-VQ-A8P2-01 12 10282743 10282743 A G CLEC7A 5'UTR 0.56 TCGA-VQ-A8P2-01 12 102872287 102872287 T C IGF1 Intron 0.62 TCGA-VQ-A8P2-01 12 102874097 102874097 C A IGF1 Missense_Mutation p.K21N 0.08 deleterious(0) benign(0.342) TCGA-VQ-A8P2-01 12 10321671 10321671 A G OLR1 Splice_Site p.X60_splice 0.11 TCGA-VQ-A8P2-01 12 103352664 103352664 G A ASCL1 Silent p.S214S 0.15 TCGA-VQ-A8P2-01 12 104118819 104118819 T C STAB2 Missense_Mutation p.C1584R 0.33 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 12 104140394 104140394 G A STAB2 Silent p.T2052T 0.13 TCGA-VQ-A8P2-01 12 104140477 104140477 G A STAB2 Missense_Mutation p.C2080Y 0.45 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 12 104142934 104142934 G A STAB2 Silent p.P2146P 0.38 TCGA-VQ-A8P2-01 12 104373818 104373818 G A TDG Missense_Mutation p.D126N 0.10 deleterious(0.02) probably_damaging(0.997) TCGA-VQ-A8P2-01 12 104473402 104473402 G A HCFC2 Missense_Mutation p.R218H 0.43 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8P2-01 12 104476599 104476600 - T HCFC2 Frame_Shift_Ins p.W330Lfs*13 0.29 TCGA-VQ-A8P2-01 12 104487253 104487253 G A HCFC2 Silent p.T458T 0.38 TCGA-VQ-A8P2-01 12 104698212 104698212 C T EID3 Missense_Mutation p.T167I 0.38 deleterious(0) possibly_damaging(0.883) TCGA-VQ-A8P2-01 12 105150763 105150763 C T CHST11 Missense_Mutation p.R81W 0.36 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 12 105280113 105280113 C T SLC41A2 Missense_Mutation p.A329T 0.12 tolerated(0.07) benign(0.175) TCGA-VQ-A8P2-01 12 105431930 105431930 G A ALDH1L2 Missense_Mutation p.S699F 0.50 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 12 105534713 105534713 C T KIAA1033 Missense_Mutation p.R533C 0.12 deleterious(0) probably_damaging(0.949) TCGA-VQ-A8P2-01 12 105538144 105538144 G A KIAA1033 Missense_Mutation p.R697Q 0.19 deleterious(0.02) probably_damaging(0.92) TCGA-VQ-A8P2-01 12 105601800 105601800 G A APPL2 Silent p.D147D 0.15 TCGA-VQ-A8P2-01 12 10601837 10601837 A G KLRC1 Missense_Mutation p.M163T 0.14 deleterious(0.04) benign(0.189) TCGA-VQ-A8P2-01 12 10762443 10762443 C T MAGOHB Missense_Mutation p.R84K 0.55 tolerated(0.44) benign(0.002) TCGA-VQ-A8P2-01 12 107937778 107937778 C - BTBD11 Frame_Shift_Del p.L453Cfs*53 0.29 TCGA-VQ-A8P2-01 12 10862684 10862684 G A YBX3 Silent p.S201S 0.42 TCGA-VQ-A8P2-01 12 108634200 108634200 C T WSCD2 Silent p.I408I 0.14 TCGA-VQ-A8P2-01 12 10868309 10868309 A G YBX3 Missense_Mutation p.V145A 0.37 deleterious(0) benign(0.2) TCGA-VQ-A8P2-01 12 108939019 108939019 C T SART3 Missense_Mutation p.V209M 0.15 deleterious(0) possibly_damaging(0.797) TCGA-VQ-A8P2-01 12 108985468 108985468 G A TMEM119 Missense_Mutation p.A231V 0.34 tolerated(1) benign(0.001) TCGA-VQ-A8P2-01 12 108985826 108985826 C T TMEM119 Missense_Mutation p.V112I 0.35 tolerated(0.3) benign(0.128) TCGA-VQ-A8P2-01 12 109017936 109017936 C A SELPLG Missense_Mutation p.D66Y 0.37 deleterious(0) unknown(0) TCGA-VQ-A8P2-01 12 109288083 109288083 A G DAO Silent p.V184V 0.67 TCGA-VQ-A8P2-01 12 109509426 109509426 G A USP30 Missense_Mutation p.E164K 0.47 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 12 109577312 109577312 G T ACACB Missense_Mutation p.K34N 0.40 tolerated_low_confidence(0.51) benign(0) TCGA-VQ-A8P2-01 12 109665200 109665200 G A ACACB Missense_Mutation p.A1303T 0.25 deleterious(0) possibly_damaging(0.857) TCGA-VQ-A8P2-01 12 10978269 10978269 A G TAS2R10 Silent p.L200L 0.25 TCGA-VQ-A8P2-01 12 109843789 109843789 C T MYO1H Silent p.D288D 0.52 TCGA-VQ-A8P2-01 12 109889471 109889471 G A KCTD10 Missense_Mutation p.R291W 0.17 tolerated_low_confidence(0.18) possibly_damaging(0.876) TCGA-VQ-A8P2-01 12 109959293 109959293 C A UBE3B Silent p.I767I 0.10 TCGA-VQ-A8P2-01 12 110019269 110019269 C T MVK Silent p.A147A 0.39 TCGA-VQ-A8P2-01 12 110224561 110224561 C T TRPV4 Missense_Mutation p.V764M 0.52 deleterious(0) probably_damaging(0.99) TCGA-VQ-A8P2-01 12 110350854 110350854 G A TCHP Missense_Mutation p.A371T 0.30 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 12 110370908 110370908 G A GIT2 Missense_Mutation p.P719S 0.54 deleterious(0.01) benign(0.007) TCGA-VQ-A8P2-01 12 110421480 110421480 C T GIT2 Missense_Mutation p.R142K 0.21 deleterious(0) probably_damaging(0.992) TCGA-VQ-A8P2-01 12 110456270 110456270 G A ANKRD13A Missense_Mutation p.R174H 0.36 deleterious(0.01) benign(0.06) TCGA-VQ-A8P2-01 12 110618350 110618350 C T IFT81 Missense_Mutation p.R438C 0.34 deleterious(0.01) probably_damaging(0.921) TCGA-VQ-A8P2-01 12 110784319 110784319 T - ATP2A2 3'UTR 0.30 TCGA-VQ-A8P2-01 12 110891548 110891548 C T GPN3 Silent p.K303K 0.43 TCGA-VQ-A8P2-01 12 11091761 11091761 C T TAS2R14 Missense_Mutation p.E16K 0.15 deleterious(0.02) possibly_damaging(0.893) TCGA-VQ-A8P2-01 12 111072572 111072572 G A TCTN1 Silent p.P270P 0.46 TCGA-VQ-A8P2-01 12 111785412 111785412 G A CUX2 Silent p.P1248P 0.41 TCGA-VQ-A8P2-01 12 111886070 111886070 C T SH2B3 Silent p.H564H 0.50 TCGA-VQ-A8P2-01 12 112103545 112103545 G A BRAP Missense_Mutation p.T265M 0.18 tolerated(0.05) possibly_damaging(0.882) TCGA-VQ-A8P2-01 12 112150387 112150387 T C ACAD10 Missense_Mutation p.V290A 0.42 deleterious(0.01) possibly_damaging(0.647) TCGA-VQ-A8P2-01 12 112227636 112227636 C T ALDH2 Silent p.A150A 0.52 TCGA-VQ-A8P2-01 12 112227710 112227710 C A ALDH2 Missense_Mutation p.P175H 0.43 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 12 112467339 112467340 - T NAA25 Frame_Shift_Ins p.I972Nfs*29 0.09 TCGA-VQ-A8P2-01 12 112516536 112516536 C T NAA25 Missense_Mutation p.A163T 0.30 tolerated(0.11) benign(0.009) TCGA-VQ-A8P2-01 12 112646328 112646328 G A HECTD4 Silent p.S2512S 0.44 TCGA-VQ-A8P2-01 12 112647848 112647848 C T HECTD4 Missense_Mutation p.R2467Q 0.47 benign(0.306) TCGA-VQ-A8P2-01 12 112654720 112654720 C T HECTD4 Silent p.P2268P 0.30 TCGA-VQ-A8P2-01 12 112669440 112669440 A G HECTD4 Missense_Mutation p.I1880T 0.17 possibly_damaging(0.825) TCGA-VQ-A8P2-01 12 112924422 112924422 G A PTPN11 Silent p.V456V 0.47 TCGA-VQ-A8P2-01 12 11338710 11338710 C T TAS2R42 Silent p.S278S 0.35 TCGA-VQ-A8P2-01 12 113425086 113425086 G A OAS2 Missense_Mutation p.E141K 0.09 tolerated(0.23) benign(0.014) TCGA-VQ-A8P2-01 12 113515318 113515318 G A DTX1 Missense_Mutation p.A117T 0.33 tolerated(0.16) benign(0.019) TCGA-VQ-A8P2-01 12 113664661 113664661 G A TPCN1 Missense_Mutation p.A74T 0.42 deleterious_low_confidence(0.01) possibly_damaging(0.661) TCGA-VQ-A8P2-01 12 113704148 113704148 G A TPCN1 Missense_Mutation p.R206Q 0.39 tolerated(0.26) benign(0.287) TCGA-VQ-A8P2-01 12 113758302 113758302 G A SLC8B1 Silent p.G176G 0.13 TCGA-VQ-A8P2-01 12 113822752 113822752 G A PLBD2 Splice_Site p.X405_splice 0.30 TCGA-VQ-A8P2-01 12 113866982 113866982 G A SDSL Missense_Mutation p.A78T 0.12 deleterious(0) probably_damaging(0.987) TCGA-VQ-A8P2-01 12 114374867 114374867 C A RBM19 Missense_Mutation p.K671N 0.37 tolerated(0.36) benign(0.001) TCGA-VQ-A8P2-01 12 114841649 114841649 C T TBX5 Missense_Mutation p.A19T 0.23 tolerated(0.5) benign(0) TCGA-VQ-A8P2-01 12 115117753 115117753 C T TBX3 Missense_Mutation p.A228T 0.33 tolerated_low_confidence(0.16) benign(0.001) TCGA-VQ-A8P2-01 12 115118767 115118767 C T TBX3 Missense_Mutation p.A192T 0.41 deleterious(0.02) probably_damaging(1) TCGA-VQ-A8P2-01 12 116972653 116972653 G A LINC00173 RNA 0.44 TCGA-VQ-A8P2-01 12 117665432 117665432 G A NOS1 Silent p.Y1174Y 0.11 TCGA-VQ-A8P2-01 12 117681124 117681124 G A NOS1 Silent p.A1014A 0.11 TCGA-VQ-A8P2-01 12 117696881 117696881 G T NOS1 Missense_Mutation p.L808I 0.09 tolerated(0.16) possibly_damaging(0.458) TCGA-VQ-A8P2-01 12 117977661 117977661 G A KSR2 Missense_Mutation p.S517F 0.11 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 12 118693343 118693343 C A TAOK3 Missense_Mutation p.E10D 0.37 tolerated(0.23) benign(0.004) TCGA-VQ-A8P2-01 12 119594348 119594348 C T SRRM4 Silent p.S527S 0.42 TCGA-VQ-A8P2-01 12 119617377 119617377 C - HSPB8 Frame_Shift_Del p.P89Hfs*12 0.29 TCGA-VQ-A8P2-01 12 120110208 120110208 G A PRKAB1 Missense_Mutation p.G88R 0.36 deleterious(0) possibly_damaging(0.668) TCGA-VQ-A8P2-01 12 120118089 120118091 AAG - PRKAB1 In_Frame_Del p.K260del 0.41 TCGA-VQ-A8P2-01 12 120138568 120138568 G A CIT Missense_Mutation p.R1869C 0.29 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 12 120152103 120152103 T C CIT Missense_Mutation p.N1402S 0.41 deleterious(0.02) benign(0.288) TCGA-VQ-A8P2-01 12 12022502 12022502 C - ETV6 Frame_Shift_Del p.L205Wfs*4 0.27 TCGA-VQ-A8P2-01 12 12022652 12022652 C T ETV6 Missense_Mutation p.P253L 0.29 tolerated(0.12) benign(0.036) TCGA-VQ-A8P2-01 12 120295462 120295462 C T CIT Silent p.S93S 0.34 TCGA-VQ-A8P2-01 12 120509471 120509471 C T CCDC64 Nonsense_Mutation p.R319* 0.44 TCGA-VQ-A8P2-01 12 120569803 120569803 G A GCN1L1 Silent p.A2447A 0.21 TCGA-VQ-A8P2-01 12 120583110 120583110 C T GCN1L1 Missense_Mutation p.V1658M 0.33 probably_damaging(0.999) TCGA-VQ-A8P2-01 12 120903581 120903581 C A SRSF9 Missense_Mutation p.E66D 0.52 tolerated(0.27) benign(0.05) TCGA-VQ-A8P2-01 12 121206283 121206284 - A SPPL3 Frame_Shift_Ins p.S207Lfs*7 0.28 TCGA-VQ-A8P2-01 12 121461817 121461817 G A OASL Silent p.N341N 0.49 TCGA-VQ-A8P2-01 12 121476739 121476739 G T OASL Silent p.A12A 0.18 TCGA-VQ-A8P2-01 12 121593903 121593903 A C P2RX7 Missense_Mutation p.T106P 0.39 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 12 121670889 121670889 C T P2RX4 Silent p.Y394Y 0.36 TCGA-VQ-A8P2-01 12 121773380 121773380 G A ANAPC5 Silent p.Y302Y 0.38 TCGA-VQ-A8P2-01 12 121947468 121947468 G T KDM2B Missense_Mutation p.L517M 0.41 deleterious(0.01) probably_damaging(0.993) TCGA-VQ-A8P2-01 12 122614630 122614630 C T MLXIP Missense_Mutation p.P294L 0.25 tolerated(0.18) possibly_damaging(0.775) TCGA-VQ-A8P2-01 12 122674894 122674894 C T LRRC43 Missense_Mutation p.R294W 0.28 tolerated(0.06) probably_damaging(0.996) TCGA-VQ-A8P2-01 12 122676081 122676081 C T LRRC43 Silent p.G352G 0.26 TCGA-VQ-A8P2-01 12 122677465 122677465 G A LRRC43 Silent p.S421S 0.17 TCGA-VQ-A8P2-01 12 122688007 122688007 C T LRRC43 3'UTR 0.48 TCGA-VQ-A8P2-01 12 122691097 122691097 G A B3GNT4 Missense_Mutation p.R100H 0.07 deleterious(0.03) possibly_damaging(0.66) TCGA-VQ-A8P2-01 12 122958811 122958811 G T ZCCHC8 Missense_Mutation p.P453T 0.15 tolerated(0.18) benign(0.034) TCGA-VQ-A8P2-01 12 12300437 12300437 G T LRP6 Missense_Mutation p.A1087D 0.08 tolerated(0.05) probably_damaging(0.991) TCGA-VQ-A8P2-01 12 12317329 12317329 G A LRP6 Nonsense_Mutation p.R644* 0.25 TCGA-VQ-A8P2-01 12 123285729 123285730 - A CCDC62 Frame_Shift_Ins p.N348Kfs*7 0.38 TCGA-VQ-A8P2-01 12 123297929 123297929 C T CCDC62 Missense_Mutation p.P655L 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A8P2-01 12 123334443 123334443 G A HIP1R Missense_Mutation p.G127R 0.34 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 12 12334328 12334328 C T LRP6 Missense_Mutation p.R341H 0.30 deleterious(0) benign(0.046) TCGA-VQ-A8P2-01 12 123425382 123425382 C T ABCB9 Missense_Mutation p.R514H 0.36 tolerated(0.11) benign(0.003) TCGA-VQ-A8P2-01 12 123428956 123428956 G A ABCB9 Silent p.V454V 0.38 TCGA-VQ-A8P2-01 12 123433228 123433228 G T ABCB9 Silent p.T332T 0.31 TCGA-VQ-A8P2-01 12 123434382 123434382 C T ABCB9 Missense_Mutation p.R267H 0.37 deleterious(0.01) possibly_damaging(0.903) TCGA-VQ-A8P2-01 12 123444518 123444518 C T ABCB9 Missense_Mutation p.V89M 0.09 tolerated(0.16) possibly_damaging(0.46) TCGA-VQ-A8P2-01 12 123467114 123467114 G A ARL6IP4 Intron 0.46 TCGA-VQ-A8P2-01 12 123498436 123498436 G A PITPNM2 Missense_Mutation p.P78S 0.41 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 12 123498551 123498551 G A PITPNM2 Silent p.G39G 0.24 TCGA-VQ-A8P2-01 12 123687390 123687390 C A MPHOSPH9 Missense_Mutation p.W369L 0.43 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 12 123749779 123749779 C T CDK2AP1 Missense_Mutation p.A82T 0.09 tolerated(0.14) benign(0.085) TCGA-VQ-A8P2-01 12 124132539 124132539 G A GTF2H3 Missense_Mutation p.R77K 0.41 tolerated(0.95) benign(0.002) TCGA-VQ-A8P2-01 12 124192158 124192158 G T TCTN2 Silent p.L664L 0.52 TCGA-VQ-A8P2-01 12 124221621 124221621 G A ATP6V0A2 Missense_Mutation p.E281K 0.39 deleterious(0.03) probably_damaging(0.911) TCGA-VQ-A8P2-01 12 124221713 124221713 G A ATP6V0A2 Missense_Mutation p.M311I 0.56 tolerated(0.24) benign(0.003) TCGA-VQ-A8P2-01 12 124289588 124289588 G A DNAH10 Splice_Site p.X878_splice 0.46 TCGA-VQ-A8P2-01 12 124349233 124349233 G A DNAH10 Missense_Mutation p.G2216R 0.43 probably_damaging(0.999) TCGA-VQ-A8P2-01 12 124362367 124362367 C T DNAH10 Missense_Mutation p.P2644S 0.07 probably_damaging(0.928) TCGA-VQ-A8P2-01 12 124395180 124395180 C A DNAH10 Nonsense_Mutation p.Y3247* 0.35 TCGA-VQ-A8P2-01 12 124414265 124414265 C T DNAH10 Missense_Mutation p.P4073S 0.22 benign(0.007) TCGA-VQ-A8P2-01 12 12483872 12483872 T C MANSC1 Missense_Mutation p.N129D 0.34 tolerated(1) benign(0) TCGA-VQ-A8P2-01 12 124841292 124841292 G A NCOR2 Missense_Mutation p.P1046L 0.33 benign(0.049) TCGA-VQ-A8P2-01 12 124848228 124848228 G - NCOR2 Frame_Shift_Del p.I976Sfs*87 0.31 TCGA-VQ-A8P2-01 12 124922528 124922528 C T NCOR2 Missense_Mutation p.R277Q 0.47 unknown(0) TCGA-VQ-A8P2-01 12 125294733 125294733 G A SCARB1 Missense_Mutation p.P277S 0.22 tolerated(0.18) probably_damaging(0.999) TCGA-VQ-A8P2-01 12 12629798 12629798 G A DUSP16 Missense_Mutation p.S656L 0.41 deleterious(0.03) probably_damaging(0.989) TCGA-VQ-A8P2-01 12 12630351 12630351 G A DUSP16 Nonsense_Mutation p.Q472* 0.41 TCGA-VQ-A8P2-01 12 12815388 12815389 - T GPR19 5'UTR 0.36 TCGA-VQ-A8P2-01 12 12870989 12870989 C T CDKN1B Silent p.G72G 0.34 TCGA-VQ-A8P2-01 12 129283941 129283941 G A SLC15A4 Missense_Mutation p.A479V 0.28 tolerated(0.17) benign(0.356) TCGA-VQ-A8P2-01 12 12974190 12974190 C T DDX47 Missense_Mutation p.A77V 0.06 deleterious(0) probably_damaging(0.972) TCGA-VQ-A8P2-01 12 130015653 130015653 C T TMEM132D Missense_Mutation p.A356T 0.34 tolerated(0.65) benign(0.012) TCGA-VQ-A8P2-01 12 130015718 130015718 C G TMEM132D Missense_Mutation p.G334A 0.19 tolerated(0.61) benign(0.061) TCGA-VQ-A8P2-01 12 130184705 130184705 G - TMEM132D Frame_Shift_Del p.T207Rfs*75 0.31 TCGA-VQ-A8P2-01 12 130647934 130647934 G T FZD10 Missense_Mutation p.E149D 0.51 tolerated(0.4) probably_damaging(0.97) TCGA-VQ-A8P2-01 12 130648712 130648712 G A FZD10 Missense_Mutation p.G409S 0.11 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 12 131276388 131276388 A G STX2 3'UTR 0.45 TCGA-VQ-A8P2-01 12 131291580 131291580 T C STX2 Missense_Mutation p.Q137R 0.16 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 12 131471846 131471846 C T GPR133 Missense_Mutation p.R233W 0.33 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 12 131487739 131487739 G A GPR133 Missense_Mutation p.V346M 0.14 tolerated(0.22) benign(0.086) TCGA-VQ-A8P2-01 12 13220092 13220092 A C KIAA1467 Missense_Mutation p.N335T 0.31 tolerated(0.1) possibly_damaging(0.799) TCGA-VQ-A8P2-01 12 132334516 132334516 G A MMP17 Silent p.T458T 0.57 TCGA-VQ-A8P2-01 12 132403134 132403134 C T ULK1 Missense_Mutation p.H807Y 0.27 tolerated(1) benign(0.001) TCGA-VQ-A8P2-01 12 132406022 132406022 C T ULK1 3'UTR 0.57 TCGA-VQ-A8P2-01 12 132426053 132426053 C T PUS1 Missense_Mutation p.P254L 0.39 tolerated(0.09) probably_damaging(0.913) TCGA-VQ-A8P2-01 12 132445398 132445398 C T EP400 Silent p.S78S 0.32 TCGA-VQ-A8P2-01 12 132624453 132624453 G A DDX51 Missense_Mutation p.R598C 0.28 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 12 132632266 132632266 G A NOC4L Missense_Mutation p.R181H 0.42 deleterious(0) probably_damaging(0.957) TCGA-VQ-A8P2-01 12 133195458 133195458 G A P2RX2 Missense_Mutation p.R19Q 0.31 tolerated(0.47) benign(0.036) TCGA-VQ-A8P2-01 12 133218278 133218278 G T POLE Missense_Mutation p.A1778D 0.23 tolerated(0.63) benign(0.094) TCGA-VQ-A8P2-01 12 133250174 133250174 G A POLE Missense_Mutation p.T449M 0.37 tolerated(0.21) benign(0.018) TCGA-VQ-A8P2-01 12 133253184 133253184 G A POLE Missense_Mutation p.P286L 0.30 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 12 133295495 133295495 C T PGAM5 Intron 0.15 TCGA-VQ-A8P2-01 12 133311112 133311112 G T ANKLE2 Missense_Mutation p.L584M 0.19 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 12 133319773 133319773 G A ANKLE2 Silent p.N440N 0.45 TCGA-VQ-A8P2-01 12 133384600 133384600 G A GOLGA3 Missense_Mutation p.A352V 0.39 tolerated_low_confidence(0.37) benign(0.019) TCGA-VQ-A8P2-01 12 133384813 133384813 G A GOLGA3 Missense_Mutation p.A281V 0.46 tolerated_low_confidence(0.45) benign(0.014) TCGA-VQ-A8P2-01 12 133502333 133502333 G A ZNF605 Missense_Mutation p.P549S 0.37 tolerated(1) benign(0.024) TCGA-VQ-A8P2-01 12 13906604 13906604 C T GRIN2B Silent p.Q219Q 0.16 TCGA-VQ-A8P2-01 12 14018806 14018806 C T GRIN2B Missense_Mutation p.D113N 0.44 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 12 14650665 14650665 C T ATF7IP Silent p.S1157S 0.35 TCGA-VQ-A8P2-01 12 14813931 14813931 C T GUCY2C Missense_Mutation p.A450T 0.29 deleterious(0.02) possibly_damaging(0.509) TCGA-VQ-A8P2-01 12 15274005 15274005 G T RERG Missense_Mutation p.P37H 0.25 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 12 15669730 15669730 C A PTPRO Missense_Mutation p.P540H 0.09 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 12 15784504 15784504 G - EPS8 Frame_Shift_Del p.P639Lfs*16 0.33 TCGA-VQ-A8P2-01 12 16713467 16713467 A G LMO3 Missense_Mutation p.F93S 0.47 deleterious(0) probably_damaging(0.994) TCGA-VQ-A8P2-01 12 1754980 1754980 C T WNT5B Silent p.D214D 0.12 TCGA-VQ-A8P2-01 12 18534783 18534783 A G PIK3C2G Missense_Mutation p.D614G 0.42 deleterious(0.03) possibly_damaging(0.791) TCGA-VQ-A8P2-01 12 18793422 18793422 C A PIK3C2G Silent p.P1373P 0.40 TCGA-VQ-A8P2-01 12 1893141 1893141 G T ADIPOR2 Missense_Mutation p.G312C 0.10 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 12 19418768 19418768 G A PLEKHA5 Missense_Mutation p.R232H 0.34 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 12 19427644 19427644 T A PLEKHA5 Missense_Mutation p.I347N 0.42 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 12 19436370 19436370 A G PLEKHA5 Silent p.L490L 0.56 TCGA-VQ-A8P2-01 12 19489490 19489490 C T PLEKHA5 Silent p.Y830Y 0.44 TCGA-VQ-A8P2-01 12 19501336 19501336 C T PLEKHA5 Missense_Mutation p.P968S 0.11 tolerated(0.07) probably_damaging(0.999) TCGA-VQ-A8P2-01 12 1953612 1953612 G - CACNA2D4 Frame_Shift_Del p.P809Lfs*24 0.32 TCGA-VQ-A8P2-01 12 1953642 1953642 G A CACNA2D4 Missense_Mutation p.P799L 0.27 deleterious(0) probably_damaging(0.98) TCGA-VQ-A8P2-01 12 20523090 20523090 G A PDE3A Missense_Mutation p.R291Q 0.41 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 12 20774293 20774293 C T PDE3A Silent p.S496S 0.43 TCGA-VQ-A8P2-01 12 20782844 20782844 G A PDE3A Missense_Mutation p.A515T 0.35 tolerated(0.28) benign(0.002) TCGA-VQ-A8P2-01 12 20782873 20782873 G A PDE3A Silent p.S524S 0.08 TCGA-VQ-A8P2-01 12 21620441 21620441 G A PYROXD1 Silent p.Q381Q 0.11 TCGA-VQ-A8P2-01 12 21624486 21624486 G A RECQL Silent p.L515L 0.09 TCGA-VQ-A8P2-01 12 21695512 21695512 C T GYS2 Silent p.V521V 0.21 TCGA-VQ-A8P2-01 12 21799901 21799901 T C LDHB Missense_Mutation p.K60R 0.12 tolerated(0.17) benign(0.047) TCGA-VQ-A8P2-01 12 22005347 22005347 G A ABCC9 Silent p.L866L 0.39 TCGA-VQ-A8P2-01 12 22012555 22012555 G A ABCC9 Nonsense_Mutation p.R824* 0.08 TCGA-VQ-A8P2-01 12 22354512 22354512 C A ST8SIA1 Missense_Mutation p.D349Y 0.51 deleterious_low_confidence(0.01) benign(0.169) TCGA-VQ-A8P2-01 12 22688251 22688251 T - C2CD5 Frame_Shift_Del p.T40Qfs*85 0.30 TCGA-VQ-A8P2-01 12 22796833 22796833 G A ETNK1 Missense_Mutation p.R187Q 0.29 tolerated(0.92) benign(0.351) TCGA-VQ-A8P2-01 12 234814 234814 C A IQSEC3 Silent p.T213T 0.27 TCGA-VQ-A8P2-01 12 25002731 25002731 G A BCAT1 Silent p.C233C 0.09 TCGA-VQ-A8P2-01 12 25307328 25307328 C T CASC1 Silent p.T121T 0.34 TCGA-VQ-A8P2-01 12 2613704 2613704 G A CACNA1C Intron 0.54 TCGA-VQ-A8P2-01 12 26217643 26217643 C A RASSF8 Missense_Mutation p.L106M 0.39 deleterious(0) probably_damaging(0.994) TCGA-VQ-A8P2-01 12 26277661 26277661 C A BHLHE41 Missense_Mutation p.D18Y 0.37 deleterious(0) probably_damaging(0.972) TCGA-VQ-A8P2-01 12 2656628 2656628 C T CACNA1C Intron 0.19 TCGA-VQ-A8P2-01 12 266233 266233 C T IQSEC3 Silent p.D732D 0.56 TCGA-VQ-A8P2-01 12 266727 266727 T C IQSEC3 Silent p.V770V 0.44 TCGA-VQ-A8P2-01 12 27068984 27068984 G T ASUN Missense_Mutation p.P400H 0.08 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 12 27553479 27553479 T G ARNTL2 Missense_Mutation p.F311C 0.36 deleterious(0) probably_damaging(0.927) TCGA-VQ-A8P2-01 12 27890521 27890521 G A MRPS35 Missense_Mutation p.V228M 0.33 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 12 28605468 28605468 A G CCDC91 Missense_Mutation p.N328D 0.34 deleterious(0.01) benign(0.054) TCGA-VQ-A8P2-01 12 2932959 2932959 C T ITFG2 Missense_Mutation p.R364C 0.08 tolerated(0.13) benign(0.004) TCGA-VQ-A8P2-01 12 29486814 29486814 G T FAR2 3'UTR 0.24 TCGA-VQ-A8P2-01 12 29524541 29524542 - T ERGIC2 Frame_Shift_Ins p.T9Nfs*16 0.19 TCGA-VQ-A8P2-01 12 29617591 29617591 T C OVCH1 Silent p.T658T 0.33 TCGA-VQ-A8P2-01 12 2968039 2968039 G A FOXM1 Missense_Mutation p.S724F 0.24 tolerated(0.05) possibly_damaging(0.73) TCGA-VQ-A8P2-01 12 2968340 2968340 A T FOXM1 Missense_Mutation p.S624T 0.34 tolerated(0.33) benign(0.258) TCGA-VQ-A8P2-01 12 2977809 2977809 G A FOXM1 Missense_Mutation p.R256C 0.09 deleterious(0) possibly_damaging(0.891) TCGA-VQ-A8P2-01 12 307146 307146 C A SLC6A12 Missense_Mutation p.Q290H 0.28 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 12 30863084 30863084 C T CAPRIN2 Missense_Mutation p.V996I 0.15 deleterious(0) probably_damaging(0.994) TCGA-VQ-A8P2-01 12 30893989 30893989 C T CAPRIN2 Missense_Mutation p.E179K 0.17 deleterious(0) probably_damaging(0.919) TCGA-VQ-A8P2-01 12 30906308 30906308 T C CAPRIN2 Silent p.K130K 0.40 TCGA-VQ-A8P2-01 12 31116914 31116914 G A TSPAN11 Missense_Mutation p.G80S 0.09 tolerated(0.18) benign(0.02) TCGA-VQ-A8P2-01 12 32481055 32481055 A G BICD1 Missense_Mutation p.R556G 0.36 tolerated(0.06) probably_damaging(0.964) TCGA-VQ-A8P2-01 12 32908785 32908785 G T YARS2 Silent p.S8S 0.36 TCGA-VQ-A8P2-01 12 32974416 32974416 G A PKP2 Silent p.G673G 0.36 TCGA-VQ-A8P2-01 12 32977078 32977078 G A PKP2 Silent p.G569G 0.13 TCGA-VQ-A8P2-01 12 33030889 33030889 C T PKP2 Missense_Mutation p.A309T 0.33 tolerated(0.55) benign(0.001) TCGA-VQ-A8P2-01 12 3649862 3649862 C A PRMT8 Missense_Mutation p.P56T 0.37 tolerated(0.11) benign(0.005) TCGA-VQ-A8P2-01 12 3649865 3649865 G T PRMT8 Nonsense_Mutation p.G57* 0.41 TCGA-VQ-A8P2-01 12 3692225 3692225 A G PRMT8 Missense_Mutation p.E277G 0.13 deleterious(0.01) possibly_damaging(0.749) TCGA-VQ-A8P2-01 12 3921271 3921271 C T PARP11 3'UTR 0.31 TCGA-VQ-A8P2-01 12 39716543 39716543 C A KIF21A Nonsense_Mutation p.E1200* 0.16 TCGA-VQ-A8P2-01 12 39726211 39726211 C A KIF21A Splice_Site p.X953_splice 0.37 TCGA-VQ-A8P2-01 12 39730902 39730902 C A KIF21A Missense_Mutation p.R805I 0.12 deleterious(0) possibly_damaging(0.65) TCGA-VQ-A8P2-01 12 40618874 40618874 G A LRRK2 5'Flank 0.43 TCGA-VQ-A8P2-01 12 40653374 40653374 C T LRRK2 Missense_Mutation p.A504V 0.43 tolerated(0.15) benign(0.041) TCGA-VQ-A8P2-01 12 40713870 40713870 A - LRRK2 Frame_Shift_Del p.R1639Gfs*15 0.38 TCGA-VQ-A8P2-01 12 41323696 41323696 G A CNTN1 Missense_Mutation p.A199T 0.14 deleterious(0) probably_damaging(0.959) TCGA-VQ-A8P2-01 12 41365254 41365254 G A CNTN1 Intron 0.33 TCGA-VQ-A8P2-01 12 41967652 41967652 C T PDZRN4 Missense_Mutation p.T1024M 0.42 deleterious(0.01) benign(0.02) TCGA-VQ-A8P2-01 12 420108 420108 C T KDM5A Nonsense_Mutation p.W1053* 0.34 TCGA-VQ-A8P2-01 12 42499816 42499816 A - GXYLT1 Frame_Shift_Del p.L223Yfs*11 0.23 TCGA-VQ-A8P2-01 12 42554411 42554413 ATG - YAF2 In_Frame_Del p.S198del 0.50 TCGA-VQ-A8P2-01 12 42853756 42853756 G T PRICKLE1 Missense_Mutation p.P784H 0.43 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 12 43837646 43837646 G A ADAMTS20 Silent p.N746N 0.37 TCGA-VQ-A8P2-01 12 44238662 44238662 C T TMEM117 Missense_Mutation p.L70F 0.36 tolerated(0.6) benign(0.003) TCGA-VQ-A8P2-01 12 4461562 4461563 - A C12orf5 Frame_Shift_Ins p.N175Kfs*5 0.33 TCGA-VQ-A8P2-01 12 44782314 44782314 C A TMEM117 Nonsense_Mutation p.C468* 0.30 TCGA-VQ-A8P2-01 12 44917128 44917128 G A NELL2 Silent p.H698H 0.39 TCGA-VQ-A8P2-01 12 45171027 45171027 C T NELL2 Missense_Mutation p.R276H 0.33 tolerated(0.1) possibly_damaging(0.858) TCGA-VQ-A8P2-01 12 46230605 46230605 G A ARID2 Missense_Mutation p.R285Q 0.47 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8P2-01 12 46243903 46243903 A - ARID2 Frame_Shift_Del p.M667Cfs*34 0.31 TCGA-VQ-A8P2-01 12 46315840 46315841 - T SCAF11 Frame_Shift_Ins p.N1461Kfs*28 0.10 TCGA-VQ-A8P2-01 12 46316717 46316717 G A SCAF11 Splice_Site p.X1375_splice 0.14 TCGA-VQ-A8P2-01 12 464322 464322 A G KDM5A Splice_Site p.X290_splice 0.43 TCGA-VQ-A8P2-01 12 46582805 46582805 G A SLC38A1 Missense_Mutation p.P471L 0.10 deleterious(0.03) probably_damaging(0.999) TCGA-VQ-A8P2-01 12 46598114 46598114 A G SLC38A1 Silent p.C264C 0.07 TCGA-VQ-A8P2-01 12 47168879 47168879 C T SLC38A4 Missense_Mutation p.A418T 0.35 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 12 4736483 4736483 C T AKAP3 Missense_Mutation p.V529M 0.14 deleterious(0) probably_damaging(0.935) TCGA-VQ-A8P2-01 12 4737923 4737923 G A AKAP3 Silent p.L49L 0.43 TCGA-VQ-A8P2-01 12 48196010 48196010 C T HDAC7 Missense_Mutation p.A23T 0.33 tolerated_low_confidence(1) benign(0.001) TCGA-VQ-A8P2-01 12 48251388 48251388 G A VDR Missense_Mutation p.R171W 0.34 deleterious(0.01) probably_damaging(0.944) TCGA-VQ-A8P2-01 12 48376665 48376665 C A COL2A1 Missense_Mutation p.G720V 0.51 probably_damaging(0.999) TCGA-VQ-A8P2-01 12 48527221 48527221 G A PFKM Missense_Mutation p.R255Q 0.10 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 12 48534553 48534553 G T PFKM Missense_Mutation p.G485C 0.43 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 12 4881642 4881642 G A GALNT8 Missense_Mutation p.R598Q 0.58 deleterious(0) probably_damaging(0.98) TCGA-VQ-A8P2-01 12 49165720 49165720 C T ADCY6 Missense_Mutation p.A942T 0.59 deleterious(0.03) possibly_damaging(0.645) TCGA-VQ-A8P2-01 12 49169170 49169170 G A ADCY6 Silent p.I632I 0.42 TCGA-VQ-A8P2-01 12 4919679 4919679 C T KCNA6 Missense_Mutation p.R158C 0.47 deleterious(0) probably_damaging(0.912) TCGA-VQ-A8P2-01 12 4920526 4920526 C T KCNA6 Missense_Mutation p.S440L 0.43 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 12 49217464 49217464 C T CACNB3 Missense_Mutation p.H57Y 0.12 tolerated(0.64) benign(0.275) TCGA-VQ-A8P2-01 12 49224368 49224368 T C DDX23 Missense_Mutation p.I783V 0.43 tolerated(0.07) benign(0.013) TCGA-VQ-A8P2-01 12 49227293 49227293 C T DDX23 Missense_Mutation p.A524T 0.17 deleterious(0.02) possibly_damaging(0.764) TCGA-VQ-A8P2-01 12 49251724 49251724 C A RND1 3'UTR 0.45 TCGA-VQ-A8P2-01 12 49415898 49415898 G A KMT2D Silent p.A5483A 0.31 TCGA-VQ-A8P2-01 12 49427504 49427504 T C KMT2D Missense_Mutation p.M3662V 0.41 benign(0.008) TCGA-VQ-A8P2-01 12 49438624 49438624 G A KMT2D Silent p.G1622G 0.11 TCGA-VQ-A8P2-01 12 49440499 49440499 G A KMT2D Silent p.S1437S 0.43 TCGA-VQ-A8P2-01 12 49443627 49443627 A G KMT2D Silent p.V1248V 0.38 TCGA-VQ-A8P2-01 12 49444809 49444809 G - KMT2D Frame_Shift_Del p.P886Lfs*44 0.26 TCGA-VQ-A8P2-01 12 49491416 49491416 G A LMBR1L 3'UTR 0.33 TCGA-VQ-A8P2-01 12 49920026 49920026 C T SPATS2 Silent p.A542A 0.18 TCGA-VQ-A8P2-01 12 49934803 49934803 C A KCNH3 Silent p.A66A 0.10 TCGA-VQ-A8P2-01 12 50027329 50027329 G T PRPF40B Missense_Mutation p.E193D 0.06 deleterious(0.01) benign(0.004) TCGA-VQ-A8P2-01 12 50030623 50030623 G T PRPF40B Missense_Mutation p.E517D 0.17 tolerated(0.4) probably_damaging(0.967) TCGA-VQ-A8P2-01 12 50190675 50190675 C A NCKAP5L Missense_Mutation p.R323L 0.36 deleterious_low_confidence(0.03) benign(0.171) TCGA-VQ-A8P2-01 12 50348004 50348004 C T AQP2 Missense_Mutation p.L143F 0.35 deleterious(0.01) benign(0.137) TCGA-VQ-A8P2-01 12 50357292 50357292 G A AQP5 Silent p.T127T 0.36 TCGA-VQ-A8P2-01 12 50410414 50410414 G A RACGAP1 Nonsense_Mutation p.Q29* 0.09 TCGA-VQ-A8P2-01 12 50847297 50847297 G A LARP4 Missense_Mutation p.D287N 0.39 tolerated(0.06) probably_damaging(0.945) TCGA-VQ-A8P2-01 12 51080465 51080465 G A DIP2B Silent p.E517E 0.50 TCGA-VQ-A8P2-01 12 51511513 51511513 G A TFCP2 Nonsense_Mutation p.R98* 0.53 TCGA-VQ-A8P2-01 12 51589897 51589897 G A POU6F1 Silent p.A35A 0.45 TCGA-VQ-A8P2-01 12 51752996 51752996 G A GALNT6 Missense_Mutation p.R430C 0.11 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 12 52283252 52283252 C T ANKRD33 Missense_Mutation p.A208V 0.40 deleterious(0) probably_damaging(0.972) TCGA-VQ-A8P2-01 12 52312898 52312898 C T ACVRL1 Missense_Mutation p.P459L 0.27 tolerated(0.05) benign(0.045) TCGA-VQ-A8P2-01 12 52404701 52404701 C A GRASP Silent p.T111T 0.35 TCGA-VQ-A8P2-01 12 52635264 52635264 A G KRT7 Silent p.T234T 0.43 TCGA-VQ-A8P2-01 12 52649966 52649966 G A KRT121P RNA 0.60 TCGA-VQ-A8P2-01 12 52757925 52757925 C T KRT85 Missense_Mutation p.R238Q 0.12 tolerated(0.33) probably_damaging(0.994) TCGA-VQ-A8P2-01 12 52760899 52760899 G A KRT85 Silent p.T97T 0.39 TCGA-VQ-A8P2-01 12 52788849 52788849 G A KRT82 Silent p.C484C 0.36 TCGA-VQ-A8P2-01 12 52824452 52824452 G A KRT75 Missense_Mutation p.S303F 0.33 deleterious(0) probably_damaging(0.992) TCGA-VQ-A8P2-01 12 52826903 52826903 A G KRT75 Missense_Mutation p.L211P 0.35 deleterious(0) probably_damaging(0.987) TCGA-VQ-A8P2-01 12 52913978 52913978 C T KRT5 Missense_Mutation p.V35M 0.48 tolerated(0.07) possibly_damaging(0.623) TCGA-VQ-A8P2-01 12 52981584 52981584 C T KRT72 Missense_Mutation p.A381T 0.41 deleterious(0.02) possibly_damaging(0.752) TCGA-VQ-A8P2-01 12 52986708 52986708 C A KRT72 Missense_Mutation p.A224S 0.43 tolerated(0.06) possibly_damaging(0.672) TCGA-VQ-A8P2-01 12 53086545 53086545 C T KRT77 Silent p.K400K 0.44 TCGA-VQ-A8P2-01 12 53097078 53097078 A T KRT77 Silent p.G47G 0.46 TCGA-VQ-A8P2-01 12 53169251 53169251 C T KRT76 Missense_Mutation p.D246N 0.07 tolerated(0.1) possibly_damaging(0.759) TCGA-VQ-A8P2-01 12 53200808 53200808 G A KRT4 3'UTR 0.31 TCGA-VQ-A8P2-01 12 53412753 53412753 C T EIF4B Missense_Mutation p.T108I 0.10 deleterious(0.04) possibly_damaging(0.803) TCGA-VQ-A8P2-01 12 53433410 53433410 G A EIF4B Intron 0.53 TCGA-VQ-A8P2-01 12 53433892 53433892 G A EIF4B Intron 0.41 TCGA-VQ-A8P2-01 12 53445640 53445640 C T TENC1 Missense_Mutation p.P36L 0.08 tolerated_low_confidence(0.18) possibly_damaging(0.628) TCGA-VQ-A8P2-01 12 53456879 53456879 G T TENC1 Missense_Mutation p.S1287I 0.45 deleterious(0) benign(0.4) TCGA-VQ-A8P2-01 12 53684634 53684634 G A ESPL1 Missense_Mutation p.A1792T 0.36 tolerated(0.6) benign(0.002) TCGA-VQ-A8P2-01 12 53686382 53686383 - G ESPL1 Frame_Shift_Ins p.E1981Gfs*6 0.37 TCGA-VQ-A8P2-01 12 53776150 53776150 G A SP1 Missense_Mutation p.R140H 0.43 tolerated(0.06) possibly_damaging(0.84) TCGA-VQ-A8P2-01 12 53819582 53819582 G T AMHR2 Missense_Mutation p.R244I 0.11 deleterious(0.04) possibly_damaging(0.639) TCGA-VQ-A8P2-01 12 53819645 53819645 G A AMHR2 Missense_Mutation p.R265Q 0.44 tolerated(0.46) possibly_damaging(0.553) TCGA-VQ-A8P2-01 12 53858560 53858560 G A PCBP2 Missense_Mutation p.G203D 0.48 tolerated(0.19) benign(0.04) TCGA-VQ-A8P2-01 12 53898542 53898542 C T TARBP2 Missense_Mutation p.P186S 0.29 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8P2-01 12 53901169 53901169 G A NPFF Silent p.D30D 0.10 TCGA-VQ-A8P2-01 12 54059156 54059156 G A ATP5G2 Missense_Mutation p.S180L 0.30 deleterious(0.05) benign(0.099) TCGA-VQ-A8P2-01 12 54109091 54109091 G T CALCOCO1 Missense_Mutation p.L427M 0.48 deleterious(0.02) probably_damaging(0.997) TCGA-VQ-A8P2-01 12 54367109 54367109 C T HOXC11 Silent p.C28C 0.29 TCGA-VQ-A8P2-01 12 54396440 54396440 C T HOXC9 Silent p.T255T 0.38 TCGA-VQ-A8P2-01 12 54403084 54403084 G A HOXC8 Missense_Mutation p.V6I 0.40 deleterious(0.03) probably_damaging(0.971) TCGA-VQ-A8P2-01 12 54576025 54576025 C T SMUG1 Missense_Mutation p.R223Q 0.39 tolerated(0.29) probably_damaging(0.915) TCGA-VQ-A8P2-01 12 54576234 54576234 C A SMUG1 Missense_Mutation p.E153D 0.19 tolerated(0.29) benign(0.001) TCGA-VQ-A8P2-01 12 54765331 54765331 G A ZNF385A Missense_Mutation p.A197V 0.41 deleterious(0) probably_damaging(0.935) TCGA-VQ-A8P2-01 12 54795804 54795804 G A ITGA5 Missense_Mutation p.P736L 0.35 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 12 54812846 54812846 G A ITGA5 Missense_Mutation p.A46V 0.25 tolerated(1) benign(0.002) TCGA-VQ-A8P2-01 12 54902172 54902172 G A NCKAP1L Splice_Site p.X122_splice 0.34 TCGA-VQ-A8P2-01 12 54963398 54963398 T C PDE1B Splice_Site p.X159_splice 0.36 TCGA-VQ-A8P2-01 12 55356965 55356965 G T TESPA1 Silent p.S239S 0.20 TCGA-VQ-A8P2-01 12 55367263 55367263 G A TESPA1 Silent p.C68C 0.47 TCGA-VQ-A8P2-01 12 55420486 55420486 G A NEUROD4 Missense_Mutation p.R88Q 0.17 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 12 55523905 55523905 C T OR9K2 Missense_Mutation p.S118F 0.46 deleterious(0.01) benign(0.404) TCGA-VQ-A8P2-01 12 55945368 55945368 C T OR6C4 Missense_Mutation p.R120C 0.09 deleterious_low_confidence(0.02) benign(0.002) TCGA-VQ-A8P2-01 12 55945910 55945910 G T OR6C4 Missense_Mutation p.K300N 0.33 tolerated_low_confidence(0.14) benign(0.255) TCGA-VQ-A8P2-01 12 5603524 5603524 C A NTF3 Silent p.L61L 0.15 TCGA-VQ-A8P2-01 12 56091736 56091736 C T ITGA7 Missense_Mutation p.A427T 0.41 tolerated(1) benign(0.001) TCGA-VQ-A8P2-01 12 56092632 56092632 C T ITGA7 Missense_Mutation p.R291H 0.18 deleterious(0.04) benign(0.233) TCGA-VQ-A8P2-01 12 56120518 56120518 T C CD63 Missense_Mutation p.H131R 0.12 tolerated(0.48) benign(0.005) TCGA-VQ-A8P2-01 12 56215924 56215924 C T DNAJC14 Missense_Mutation p.R649Q 0.43 deleterious(0.03) probably_damaging(0.999) TCGA-VQ-A8P2-01 12 56221291 56221291 G A DNAJC14 Silent p.S384S 0.35 TCGA-VQ-A8P2-01 12 56231451 56231451 C T MMP19 Missense_Mutation p.R359H 0.31 deleterious(0.01) probably_damaging(0.956) TCGA-VQ-A8P2-01 12 56429004 56429004 G A IKZF4 Missense_Mutation p.M549I 0.37 deleterious(0) probably_damaging(0.99) TCGA-VQ-A8P2-01 12 56474133 56474133 G A ERBB3 Missense_Mutation p.A17T 0.62 tolerated(0.22) benign(0) TCGA-VQ-A8P2-01 12 56601441 56601441 G A RNF41 Silent p.N197N 0.08 TCGA-VQ-A8P2-01 12 56601506 56601506 A G RNF41 Missense_Mutation p.Y176H 0.40 tolerated(0.07) benign(0.008) TCGA-VQ-A8P2-01 12 56620043 56620043 C T NABP2 Missense_Mutation p.A124V 0.47 tolerated(0.34) benign(0) TCGA-VQ-A8P2-01 12 56647935 56647935 C T ANKRD52 Silent p.T274T 0.41 TCGA-VQ-A8P2-01 12 56822755 56822755 G A TIMELESS Missense_Mutation p.R406C 0.44 deleterious(0) possibly_damaging(0.696) TCGA-VQ-A8P2-01 12 56823908 56823908 C T TIMELESS Missense_Mutation p.R356Q 0.33 tolerated(0.13) benign(0.109) TCGA-VQ-A8P2-01 12 56848355 56848355 C T MIP Missense_Mutation p.A15T 0.47 tolerated(0.05) probably_damaging(1) TCGA-VQ-A8P2-01 12 56956203 56956203 A G RBMS2 Silent p.P23P 0.33 TCGA-VQ-A8P2-01 12 56992959 56992959 G A BAZ2A Missense_Mutation p.R1788W 0.39 deleterious(0) probably_damaging(0.978) TCGA-VQ-A8P2-01 12 57036479 57036479 C T ATP5B Missense_Mutation p.R310H 0.42 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-VQ-A8P2-01 12 57109777 57109777 G A NACA Missense_Mutation p.P693L 0.35 deleterious_low_confidence(0) possibly_damaging(0.859) TCGA-VQ-A8P2-01 12 57388979 57388979 C T GPR182 Intron 0.45 TCGA-VQ-A8P2-01 12 57389284 57389284 C T GPR182 Silent p.I97I 0.44 TCGA-VQ-A8P2-01 12 57390138 57390138 G A GPR182 Missense_Mutation p.S382N 0.47 tolerated_low_confidence(1) benign(0.001) TCGA-VQ-A8P2-01 12 57493603 57493603 C A STAT6 Missense_Mutation p.S564I 0.18 deleterious(0) probably_damaging(0.993) TCGA-VQ-A8P2-01 12 57501038 57501038 T A STAT6 Silent p.G105G 0.33 TCGA-VQ-A8P2-01 12 57548130 57548130 C T LRP1 Silent p.G327G 0.17 TCGA-VQ-A8P2-01 12 57567663 57567663 G A LRP1 Silent p.S1149S 0.36 TCGA-VQ-A8P2-01 12 57578164 57578164 G A LRP1 Missense_Mutation p.D2039N 0.27 possibly_damaging(0.908) TCGA-VQ-A8P2-01 12 57600403 57600403 G A LRP1 Missense_Mutation p.R3913H 0.12 possibly_damaging(0.694) TCGA-VQ-A8P2-01 12 57602545 57602545 G A LRP1 Silent p.A4030A 0.08 TCGA-VQ-A8P2-01 12 57605329 57605329 G A LRP1 Missense_Mutation p.G4384D 0.17 benign(0.017) TCGA-VQ-A8P2-01 12 57626584 57626584 A G SHMT2 Missense_Mutation p.D272G 0.27 deleterious(0) probably_damaging(0.994) TCGA-VQ-A8P2-01 12 57630876 57630876 T - NDUFA4L2 5'UTR 0.41 TCGA-VQ-A8P2-01 12 57642847 57642847 T C STAC3 Missense_Mutation p.D104G 0.26 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 12 57643005 57643005 C T STAC3 Silent p.E51E 0.52 TCGA-VQ-A8P2-01 12 57872405 57872405 C T ARHGAP9 Missense_Mutation p.S151N 0.08 tolerated(0.71) benign(0.004) TCGA-VQ-A8P2-01 12 57905498 57905498 G T MARS Missense_Mutation p.E462D 0.35 tolerated(0.13) benign(0.093) TCGA-VQ-A8P2-01 12 57920784 57920784 G A MBD6 Missense_Mutation p.S619N 0.38 deleterious_low_confidence(0) unknown(0) TCGA-VQ-A8P2-01 12 57926365 57926365 G A DCTN2 Missense_Mutation p.T310I 0.37 deleterious(0.04) possibly_damaging(0.772) TCGA-VQ-A8P2-01 12 57957971 57957971 T C KIF5A Silent p.D124D 0.41 TCGA-VQ-A8P2-01 12 57965917 57965917 C A KIF5A Missense_Mutation p.A479D 0.43 tolerated(0.1) benign(0.054) TCGA-VQ-A8P2-01 12 57966450 57966450 G A KIF5A Missense_Mutation p.G553R 0.38 tolerated(0.22) possibly_damaging(0.853) TCGA-VQ-A8P2-01 12 58007885 58007885 C T ARHGEF25 Silent p.I252I 0.38 TCGA-VQ-A8P2-01 12 58019552 58019552 C T SLC26A10 3'UTR 0.52 TCGA-VQ-A8P2-01 12 58022556 58022556 G A B4GALNT1 Silent p.S314S 0.38 TCGA-VQ-A8P2-01 12 58121551 58121551 G A AGAP2 Missense_Mutation p.R924C 0.27 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 12 58127812 58127812 G A AGAP2 Nonsense_Mutation p.Q516* 0.35 TCGA-VQ-A8P2-01 12 58144490 58144490 G A CDK4 Missense_Mutation p.P194L 0.07 deleterious(0) possibly_damaging(0.836) TCGA-VQ-A8P2-01 12 58204166 58204166 C T AVIL Missense_Mutation p.D243N 0.22 tolerated(0.3) probably_damaging(0.994) TCGA-VQ-A8P2-01 12 58335628 58335628 C T XRCC6BP1 Silent p.S48S 0.41 TCGA-VQ-A8P2-01 12 59267866 59267866 G A LRIG3 Missense_Mutation p.A1029V 0.44 tolerated_low_confidence(0.14) benign(0.036) TCGA-VQ-A8P2-01 12 59271559 59271559 G T LRIG3 Missense_Mutation p.A720D 0.45 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8P2-01 12 6030364 6030364 C T ANO2 Missense_Mutation p.V122I 0.24 tolerated(0.58) benign(0.007) TCGA-VQ-A8P2-01 12 6103260 6103260 C T VWF Silent p.T2122T 0.30 TCGA-VQ-A8P2-01 12 6132836 6132836 G A VWF Missense_Mutation p.H1114Y 0.36 deleterious(0.02) possibly_damaging(0.873) TCGA-VQ-A8P2-01 12 62261176 62261176 T C FAM19A2 Missense_Mutation p.K11E 0.42 tolerated_low_confidence(0.21) benign(0.034) TCGA-VQ-A8P2-01 12 62959811 62959811 G A MON2 Silent p.P1398P 0.11 TCGA-VQ-A8P2-01 12 63544008 63544008 G T AVPR1A Nonsense_Mutation p.C203* 0.39 TCGA-VQ-A8P2-01 12 64055224 64055224 G A DPY19L2 Missense_Mutation p.A163V 0.38 deleterious(0) probably_damaging(0.991) TCGA-VQ-A8P2-01 12 64587877 64587877 C T C12orf66 Nonsense_Mutation p.W361* 0.30 TCGA-VQ-A8P2-01 12 64588208 64588208 G T C12orf66 Missense_Mutation p.P251H 0.27 tolerated(0.06) probably_damaging(0.969) TCGA-VQ-A8P2-01 12 64827208 64827208 G A XPOT Silent p.P759P 0.36 TCGA-VQ-A8P2-01 12 6483574 6483574 C T SCNN1A Missense_Mutation p.V185I 0.30 tolerated(0.29) benign(0.047) TCGA-VQ-A8P2-01 12 65136922 65136922 G A GNS Missense_Mutation p.T264M 0.10 tolerated(0.1) benign(0.042) TCGA-VQ-A8P2-01 12 65564469 65564470 - C LEMD3 Frame_Shift_Ins p.L367Sfs*8 0.26 TCGA-VQ-A8P2-01 12 6562830 6562830 G A TAPBPL Nonsense_Mutation p.W171* 0.40 TCGA-VQ-A8P2-01 12 6575035 6575035 C A VAMP1 Missense_Mutation p.K87N 0.42 deleterious(0) probably_damaging(0.978) TCGA-VQ-A8P2-01 12 6626105 6626105 G A NCAPD2 Missense_Mutation p.D367N 0.40 tolerated(0.11) benign(0.275) TCGA-VQ-A8P2-01 12 6666141 6666141 C T NOP2 3'UTR 0.54 TCGA-VQ-A8P2-01 12 6666659 6666661 AGG - NOP2 In_Frame_Del p.S679del 0.46 TCGA-VQ-A8P2-01 12 66725061 66725061 G T HELB Missense_Mutation p.R933L 0.50 deleterious(0.03) benign(0.11) TCGA-VQ-A8P2-01 12 6687070 6687070 G A CHD4 Missense_Mutation p.R1748W 0.13 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 12 6715451 6715451 G - CHD4 Frame_Shift_Del p.P30Hfs*172 0.33 TCGA-VQ-A8P2-01 12 67698442 67698442 C T CAND1 Nonsense_Mutation p.R451* 0.39 TCGA-VQ-A8P2-01 12 6859439 6859439 G T MLF2 Silent p.T101T 0.09 TCGA-VQ-A8P2-01 12 68708946 68708946 C A MDM1 Missense_Mutation p.E427D 0.15 deleterious(0.02) possibly_damaging(0.82) TCGA-VQ-A8P2-01 12 68720768 68720769 - T MDM1 Frame_Shift_Ins p.R56Kfs*7 0.25 TCGA-VQ-A8P2-01 12 68724912 68724912 C T MDM1 Nonsense_Mutation p.W36* 0.14 TCGA-VQ-A8P2-01 12 6879616 6879616 C T PTMS 3'UTR 0.39 TCGA-VQ-A8P2-01 12 69140373 69140373 G A SLC35E3 Silent p.L72L 0.27 TCGA-VQ-A8P2-01 12 69252738 69252738 A G CPM Missense_Mutation p.Y352H 0.41 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8P2-01 12 69264046 69264046 G T CPM Missense_Mutation p.L189I 0.12 deleterious(0.01) probably_damaging(0.972) TCGA-VQ-A8P2-01 12 6940410 6940410 T C LEPREL2 Missense_Mutation p.V338A 0.32 tolerated(1) benign(0.002) TCGA-VQ-A8P2-01 12 69645017 69645017 C A CPSF6 Missense_Mutation p.P57T 0.08 tolerated(0.09) unknown(0) TCGA-VQ-A8P2-01 12 6964630 6964630 G T USP5 Missense_Mutation p.E59D 0.38 tolerated(0.11) benign(0.007) TCGA-VQ-A8P2-01 12 69652652 69652652 G A CPSF6 Missense_Mutation p.R326H 0.48 tolerated(0.62) unknown(0) TCGA-VQ-A8P2-01 12 69653881 69653881 C T CPSF6 Missense_Mutation p.S458F 0.10 deleterious(0) probably_damaging(0.986) TCGA-VQ-A8P2-01 12 69965940 69965940 G A FRS2 Missense_Mutation p.R152Q 0.39 tolerated(0.06) possibly_damaging(0.703) TCGA-VQ-A8P2-01 12 69981972 69981972 A G CCT2 Missense_Mutation p.I126V 0.34 tolerated(0.07) benign(0.358) TCGA-VQ-A8P2-01 12 7016489 7016489 C T LRRC23 Silent p.I167I 0.08 TCGA-VQ-A8P2-01 12 7064644 7064644 T C PTPN6 Missense_Mutation p.F248S 0.48 deleterious(0) probably_damaging(0.991) TCGA-VQ-A8P2-01 12 7065624 7065624 G A PTPN6 Missense_Mutation p.A323T 0.39 deleterious(0) possibly_damaging(0.858) TCGA-VQ-A8P2-01 12 7090215 7090215 T C LPCAT3 Missense_Mutation p.K210E 0.44 tolerated(0.39) possibly_damaging(0.733) TCGA-VQ-A8P2-01 12 70956819 70956819 C T PTPRB Missense_Mutation p.A1325T 0.61 tolerated(0.77) benign(0.002) TCGA-VQ-A8P2-01 12 71002992 71002992 T C PTPRB Missense_Mutation p.D279G 0.32 tolerated_low_confidence(0.06) benign(0.059) TCGA-VQ-A8P2-01 12 71056355 71056355 C T PTPRR Missense_Mutation p.G510R 0.30 tolerated(0.07) probably_damaging(0.978) TCGA-VQ-A8P2-01 12 7177521 7177521 G A C1S Missense_Mutation p.V545I 0.41 tolerated(0.38) benign(0.021) TCGA-VQ-A8P2-01 12 72025862 72025863 - A ZFC3H1 Frame_Shift_Ins p.L1084Sfs*7 0.26 TCGA-VQ-A8P2-01 12 72037976 72037976 T C ZFC3H1 Missense_Mutation p.R468G 0.12 deleterious(0) probably_damaging(0.983) TCGA-VQ-A8P2-01 12 72094731 72094731 C A TMEM19 Missense_Mutation p.L323I 0.09 tolerated(0.16) possibly_damaging(0.694) TCGA-VQ-A8P2-01 12 72425589 72425589 A C TPH2 3'UTR 0.36 TCGA-VQ-A8P2-01 12 72962421 72962421 G A TRHDE Missense_Mutation p.V661M 0.24 deleterious(0.03) benign(0.082) TCGA-VQ-A8P2-01 12 72969286 72969286 G A TRHDE Missense_Mutation p.R717Q 0.44 deleterious(0) probably_damaging(0.976) TCGA-VQ-A8P2-01 12 7360380 7360380 G T PEX5 Missense_Mutation p.Q379H 0.39 deleterious(0.03) benign(0.011) TCGA-VQ-A8P2-01 12 7477158 7477158 G A ACSM4 Silent p.S500S 0.36 TCGA-VQ-A8P2-01 12 75706658 75706658 G A CAPS2 Missense_Mutation p.A229V 0.33 tolerated(1) benign(0.006) TCGA-VQ-A8P2-01 12 75784887 75784887 C T GLIPR1L2 5'UTR 0.29 TCGA-VQ-A8P2-01 12 75816727 75816727 A G GLIPR1L2 Missense_Mutation p.T210A 0.36 tolerated(0.06) benign(0.014) TCGA-VQ-A8P2-01 12 75902131 75902131 C T KRR1 Missense_Mutation p.A61T 0.33 deleterious(0.01) probably_damaging(0.943) TCGA-VQ-A8P2-01 12 76740674 76740674 T C BBS10 Missense_Mutation p.N364S 0.38 tolerated(0.3) benign(0.026) TCGA-VQ-A8P2-01 12 76881315 76881315 G A OSBPL8 Missense_Mutation p.A6V 0.26 tolerated_low_confidence(0.98) benign(0) TCGA-VQ-A8P2-01 12 77421847 77421847 G A E2F7 Silent p.D652D 0.15 TCGA-VQ-A8P2-01 12 7802159 7802159 G T APOBEC1 Missense_Mutation p.S232Y 0.41 tolerated_low_confidence(1) benign(0.001) TCGA-VQ-A8P2-01 12 78444658 78444658 G A NAV3 Silent p.P749P 0.41 TCGA-VQ-A8P2-01 12 78444705 78444705 G A NAV3 Missense_Mutation p.R765H 0.45 deleterious(0.01) probably_damaging(0.938) TCGA-VQ-A8P2-01 12 78540155 78540155 G T NAV3 Nonsense_Mutation p.E1564* 0.45 TCGA-VQ-A8P2-01 12 7972127 7972127 C A SLC2A14 Missense_Mutation p.G364V 0.09 tolerated(0.07) possibly_damaging(0.626) TCGA-VQ-A8P2-01 12 80203606 80203606 C T PPP1R12A Missense_Mutation p.R475K 0.17 deleterious(0.01) probably_damaging(0.977) TCGA-VQ-A8P2-01 12 80746145 80746145 C T OTOGL Missense_Mutation p.A1770V 0.43 deleterious(0.04) benign(0.165) TCGA-VQ-A8P2-01 12 8083899 8083899 C T SLC2A3 Missense_Mutation p.R151Q 0.45 deleterious(0.02) benign(0.168) TCGA-VQ-A8P2-01 12 81242050 81242050 G A LIN7A Missense_Mutation p.R85C 0.08 deleterious(0) benign(0.14) TCGA-VQ-A8P2-01 12 81747077 81747077 C A PPFIA2 Missense_Mutation p.Q605H 0.38 tolerated(0.13) possibly_damaging(0.641) TCGA-VQ-A8P2-01 12 8192547 8192547 G A FOXJ2 Missense_Mutation p.R40H 0.31 tolerated(0.25) probably_damaging(0.984) TCGA-VQ-A8P2-01 12 8212549 8212549 G A C3AR1 Missense_Mutation p.S78L 0.32 tolerated(0.07) benign(0.115) TCGA-VQ-A8P2-01 12 82783615 82783615 G A METTL25 Missense_Mutation p.E149K 0.41 deleterious(0.01) benign(0.075) TCGA-VQ-A8P2-01 12 82824740 82824740 C T METTL25 Missense_Mutation p.R450C 0.41 deleterious(0) probably_damaging(0.912) TCGA-VQ-A8P2-01 12 8329762 8329762 T C ZNF705A Silent p.H162H 0.41 TCGA-VQ-A8P2-01 12 85255361 85255361 T C SLC6A15 3'UTR 0.42 TCGA-VQ-A8P2-01 12 85266954 85266954 T C SLC6A15 Missense_Mutation p.N341D 0.39 deleterious(0.02) probably_damaging(0.964) TCGA-VQ-A8P2-01 12 85449367 85449367 A C LRRIQ1 Missense_Mutation p.T266P 0.41 deleterious(0.04) possibly_damaging(0.828) TCGA-VQ-A8P2-01 12 86199529 86199529 C T RASSF9 Missense_Mutation p.E87K 0.24 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8P2-01 12 8757505 8757505 G T AICDA Nonsense_Mutation p.C147* 0.43 TCGA-VQ-A8P2-01 12 8808410 8808410 C T MFAP5 Silent p.A37A 0.07 TCGA-VQ-A8P2-01 12 88505483 88505483 T C CEP290 Silent p.K735K 0.29 TCGA-VQ-A8P2-01 12 88553892 88553892 A G TMTC3 Missense_Mutation p.I170M 0.43 tolerated(0.13) benign(0) TCGA-VQ-A8P2-01 12 8926004 8926004 G A RIMKLB Missense_Mutation p.G262D 0.07 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 12 89917610 89917610 C T GALNT4 Silent p.P239P 0.09 TCGA-VQ-A8P2-01 12 89918149 89918149 A G GALNT4 Missense_Mutation p.S60P 0.17 tolerated(0.21) benign(0.265) TCGA-VQ-A8P2-01 12 9000289 9000289 C T A2ML1 Missense_Mutation p.R610C 0.18 deleterious(0.03) benign(0.276) TCGA-VQ-A8P2-01 12 90004258 90004258 A G ATP2B1 Missense_Mutation p.W759R 0.07 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 12 9002770 9002770 C T A2ML1 Missense_Mutation p.P712S 0.10 tolerated(0.19) benign(0.007) TCGA-VQ-A8P2-01 12 9004404 9004404 C T A2ML1 Silent p.H753H 0.52 TCGA-VQ-A8P2-01 12 9075306 9075306 G A PHC1 Missense_Mutation p.M178I 0.50 deleterious(0.02) possibly_damaging(0.831) TCGA-VQ-A8P2-01 12 91347926 91347926 G A CCER1 Silent p.Y198Y 0.30 TCGA-VQ-A8P2-01 12 91348191 91348191 C T CCER1 Missense_Mutation p.R110Q 0.39 tolerated(0.16) benign(0.146) TCGA-VQ-A8P2-01 12 91449224 91449224 G A KERA Nonsense_Mutation p.R279* 0.41 TCGA-VQ-A8P2-01 12 91449503 91449503 C A KERA Missense_Mutation p.D186Y 0.14 deleterious(0.03) possibly_damaging(0.852) TCGA-VQ-A8P2-01 12 9230305 9230305 C T A2M Missense_Mutation p.A1090T 0.09 deleterious(0) probably_damaging(0.925) TCGA-VQ-A8P2-01 12 9230315 9230315 C T A2M Silent p.L1086L 0.35 TCGA-VQ-A8P2-01 12 9231868 9231868 G A A2M Nonsense_Mutation p.R1031* 0.31 TCGA-VQ-A8P2-01 12 93100627 93100627 T C C12orf74 Missense_Mutation p.W74R 0.25 tolerated(0.3) benign(0.054) TCGA-VQ-A8P2-01 12 9353641 9353641 G A PZP Nonsense_Mutation p.R173* 0.34 TCGA-VQ-A8P2-01 12 94243920 94243920 C T CRADD Missense_Mutation p.S158L 0.43 deleterious(0.01) possibly_damaging(0.549) TCGA-VQ-A8P2-01 12 94243994 94243994 G A CRADD Missense_Mutation p.G183R 0.11 deleterious(0.01) possibly_damaging(0.741) TCGA-VQ-A8P2-01 12 96104339 96104339 G A NTN4 Missense_Mutation p.R354C 0.46 tolerated(0.05) possibly_damaging(0.832) TCGA-VQ-A8P2-01 12 96330275 96330275 A C CCDC38 Missense_Mutation p.L5V 0.12 tolerated_low_confidence(0.47) benign(0.001) TCGA-VQ-A8P2-01 12 96384170 96384170 C T HAL Splice_Site p.X285_splice 0.38 TCGA-VQ-A8P2-01 12 96691430 96691430 G T CDK17 Missense_Mutation p.S262Y 0.35 deleterious(0.04) possibly_damaging(0.826) TCGA-VQ-A8P2-01 12 970263 970263 C T WNK1 Nonsense_Mutation p.R569* 0.39 TCGA-VQ-A8P2-01 12 97150239 97150239 A C C12orf55 Missense_Mutation p.K2615T 0.44 deleterious(0.04) benign(0.001) TCGA-VQ-A8P2-01 12 97306518 97306518 G A NEDD1 Missense_Mutation p.A59T 0.08 deleterious(0.04) benign(0.394) TCGA-VQ-A8P2-01 12 97328924 97328924 G A NEDD1 Silent p.L227L 0.35 TCGA-VQ-A8P2-01 12 98921672 98921672 A - TMPO Frame_Shift_Del p.T99Lfs*12 0.40 TCGA-VQ-A8P2-01 12 98927072 98927072 A G TMPO Missense_Mutation p.H346R 0.54 tolerated_low_confidence(0.27) benign(0) TCGA-VQ-A8P2-01 12 98927397 98927397 C T TMPO Silent p.S454S 0.38 TCGA-VQ-A8P2-01 12 99007788 99007788 T C IKBIP Missense_Mutation p.T210A 0.45 tolerated(0.07) probably_damaging(0.994) TCGA-VQ-A8P2-01 12 99019629 99019629 C T IKBIP 3'UTR 0.22 TCGA-VQ-A8P2-01 13 101182359 101182359 C A PCCA Missense_Mutation p.S709Y 0.21 deleterious(0.01) possibly_damaging(0.595) TCGA-VQ-A8P2-01 13 101707701 101707701 G A NALCN Silent p.T1721T 0.40 TCGA-VQ-A8P2-01 13 101707719 101707719 T C NALCN Silent p.E1715E 0.37 TCGA-VQ-A8P2-01 13 101763488 101763488 C T NALCN Missense_Mutation p.R761H 0.44 deleterious(0.04) possibly_damaging(0.774) TCGA-VQ-A8P2-01 13 102105145 102105145 G A ITGBL1 5'UTR 0.38 TCGA-VQ-A8P2-01 13 103257199 103257199 C T TPP2 Silent p.G74G 0.38 TCGA-VQ-A8P2-01 13 103292684 103292684 C T TPP2 Nonsense_Mutation p.R660* 0.44 TCGA-VQ-A8P2-01 13 103418836 103418836 G A TEX30 Missense_Mutation p.S200L 0.11 deleterious(0.02) benign(0.171) TCGA-VQ-A8P2-01 13 103459698 103459698 G T BIVM Missense_Mutation p.E27D 0.31 tolerated_low_confidence(0.22) benign(0.054) TCGA-VQ-A8P2-01 13 107823045 107823045 C T FAM155A Missense_Mutation p.V393I 0.45 tolerated(0.47) benign(0.023) TCGA-VQ-A8P2-01 13 108518905 108518905 C T FAM155A Missense_Mutation p.G14S 0.35 deleterious(0.04) probably_damaging(0.999) TCGA-VQ-A8P2-01 13 108882337 108882337 A G ABHD13 Silent p.R257R 0.42 TCGA-VQ-A8P2-01 13 110436680 110436680 C T IRS2 Missense_Mutation p.R574K 0.23 deleterious(0.01) probably_damaging(0.99) TCGA-VQ-A8P2-01 13 110830458 110830458 G A COL4A1 Missense_Mutation p.P860L 0.45 benign(0.127) TCGA-VQ-A8P2-01 13 110835427 110835427 C T COL4A1 Missense_Mutation p.G670R 0.56 probably_damaging(0.999) TCGA-VQ-A8P2-01 13 110864214 110864214 A G COL4A1 Splice_Site p.X147_splice 0.40 TCGA-VQ-A8P2-01 13 111156563 111156563 C A COL4A2 Silent p.R1452R 0.44 TCGA-VQ-A8P2-01 13 111213947 111213947 G T RAB20 5'UTR 0.65 TCGA-VQ-A8P2-01 13 113174253 113174253 C T TUBGCP3 Missense_Mutation p.A610T 0.15 deleterious(0) possibly_damaging(0.902) TCGA-VQ-A8P2-01 13 113219486 113219486 C T TUBGCP3 Missense_Mutation p.R64Q 0.43 deleterious(0.01) benign(0.245) TCGA-VQ-A8P2-01 13 113333910 113333910 C T C13orf35 Missense_Mutation p.R73C 0.37 deleterious_low_confidence(0.05) benign(0.002) TCGA-VQ-A8P2-01 13 113513705 113513705 A - ATP11A Splice_Site p.X890_splice 0.35 TCGA-VQ-A8P2-01 13 113748868 113748868 C T MCF2L Silent p.D998D 0.22 TCGA-VQ-A8P2-01 13 113751083 113751083 C T MCF2L Intron 0.33 TCGA-VQ-A8P2-01 13 113771104 113771104 C T F7 Missense_Mutation p.P199L 0.35 deleterious(0.04) probably_damaging(1) TCGA-VQ-A8P2-01 13 113772767 113772767 C T F7 Silent p.S282S 0.44 TCGA-VQ-A8P2-01 13 113772832 113772832 C T F7 Missense_Mutation p.A304V 0.50 deleterious(0.03) possibly_damaging(0.581) TCGA-VQ-A8P2-01 13 113783887 113783887 C T F10 Silent p.Y64Y 0.44 TCGA-VQ-A8P2-01 13 113914989 113914989 C T CUL4A Silent p.I700I 0.18 TCGA-VQ-A8P2-01 13 113917909 113917909 C T CUL4A 3'Flank 0.40 TCGA-VQ-A8P2-01 13 114009749 114009749 C T GRTP1 Missense_Mutation p.V77I 0.41 tolerated(0.29) benign(0.08) TCGA-VQ-A8P2-01 13 114077105 114077105 G A ADPRHL1 3'UTR 0.53 TCGA-VQ-A8P2-01 13 114077155 114077155 C T ADPRHL1 Silent p.L349L 0.37 TCGA-VQ-A8P2-01 13 114149982 114149982 C T TMCO3 Missense_Mutation p.A29V 0.50 tolerated(0.24) benign(0.035) TCGA-VQ-A8P2-01 13 114535644 114535644 C T GAS6 Missense_Mutation p.V306M 0.31 deleterious(0.02) probably_damaging(0.998) TCGA-VQ-A8P2-01 13 114751163 114751163 G A RASA3 Silent p.I784I 0.38 TCGA-VQ-A8P2-01 13 115090609 115090609 G A CHAMP1 Missense_Mutation p.R431H 0.07 tolerated(0.13) benign(0.018) TCGA-VQ-A8P2-01 13 115091245 115091245 C T CHAMP1 Missense_Mutation p.A643V 0.38 tolerated(0.09) benign(0.003) TCGA-VQ-A8P2-01 13 19751108 19751108 G A TUBA3C Missense_Mutation p.R339C 0.11 deleterious_low_confidence(0.03) possibly_damaging(0.884) TCGA-VQ-A8P2-01 13 20251956 20251956 T G MPHOSPH8 3'Flank 0.50 TCGA-VQ-A8P2-01 13 20277383 20277383 G A PSPC1 Missense_Mutation p.P502S 0.10 deleterious(0.01) benign(0.215) TCGA-VQ-A8P2-01 13 20568057 20568057 C A ZMYM2 Missense_Mutation p.P282H 0.37 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 13 20660045 20660045 C T ZMYM2 Missense_Mutation p.T1342M 0.32 deleterious(0) possibly_damaging(0.865) TCGA-VQ-A8P2-01 13 20660088 20660088 A G ZMYM2 Silent p.V1356V 0.35 TCGA-VQ-A8P2-01 13 21549270 21549270 G A LATS2 Silent p.F1002F 0.43 TCGA-VQ-A8P2-01 13 21549329 21549329 G A LATS2 Missense_Mutation p.R983W 0.43 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 13 21549437 21549437 G T LATS2 Missense_Mutation p.L947I 0.37 tolerated(0.16) benign(0.429) TCGA-VQ-A8P2-01 13 21562306 21562306 G A LATS2 Missense_Mutation p.A538V 0.39 tolerated(0.23) benign(0.004) TCGA-VQ-A8P2-01 13 21562395 21562395 G A LATS2 Silent p.G508G 0.29 TCGA-VQ-A8P2-01 13 21721339 21721339 G A SAP18 Missense_Mutation p.G126D 0.15 deleterious(0.01) possibly_damaging(0.804) TCGA-VQ-A8P2-01 13 21721375 21721375 C A SAP18 Missense_Mutation p.S138Y 0.41 deleterious(0.01) benign(0.393) TCGA-VQ-A8P2-01 13 21974549 21974549 G A ZDHHC20 Missense_Mutation p.A186V 0.56 tolerated(0.08) probably_damaging(0.939) TCGA-VQ-A8P2-01 13 23908127 23908127 A G SACS Silent p.P3296P 0.48 TCGA-VQ-A8P2-01 13 23914687 23914687 T - SACS Frame_Shift_Del p.I1110Lfs*16 0.36 TCGA-VQ-A8P2-01 13 24465589 24465589 C T C1QTNF9B Missense_Mutation p.V281M 0.41 tolerated(0.29) benign(0) TCGA-VQ-A8P2-01 13 24515468 24515468 T - ANKRD20A19P RNA 0.09 TCGA-VQ-A8P2-01 13 24892968 24892968 G A C1QTNF9 Missense_Mutation p.R60H 0.11 tolerated(0.54) benign(0.002) TCGA-VQ-A8P2-01 13 25155840 25155840 G A RP11-556N21.1 RNA 0.48 TCGA-VQ-A8P2-01 13 25338307 25338307 G A RNF17 5'UTR 0.31 TCGA-VQ-A8P2-01 13 25353835 25353835 G A RNF17 Missense_Mutation p.A154T 0.37 deleterious(0.03) probably_damaging(0.956) TCGA-VQ-A8P2-01 13 25418915 25418915 G A RNF17 Missense_Mutation p.R986K 0.19 tolerated(0.23) benign(0.002) TCGA-VQ-A8P2-01 13 25745663 25745663 G A AMER2 Missense_Mutation p.A32V 0.25 deleterious_low_confidence(0.02) probably_damaging(0.935) TCGA-VQ-A8P2-01 13 25914127 25914127 G A NUPL1 Missense_Mutation p.G552E 0.07 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 13 26620911 26620911 C T SHISA2 Missense_Mutation p.E210K 0.14 tolerated(0.15) benign(0.122) TCGA-VQ-A8P2-01 13 26788986 26788986 C A RNF6 Missense_Mutation p.G345C 0.20 deleterious(0.03) probably_damaging(1) TCGA-VQ-A8P2-01 13 26978114 26978114 T C CDK8 Missense_Mutation p.Y431H 0.20 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-VQ-A8P2-01 13 26978250 26978250 C T CDK8 3'UTR 0.31 TCGA-VQ-A8P2-01 13 27259824 27259824 G T WASF3 Splice_Site p.X451_splice 0.11 TCGA-VQ-A8P2-01 13 28014243 28014243 G A MTIF3 Nonsense_Mutation p.R115* 0.40 TCGA-VQ-A8P2-01 13 28830625 28830625 T C PAN3 Silent p.G399G 0.44 TCGA-VQ-A8P2-01 13 28877424 28877424 G A FLT1 Silent p.H1299H 0.08 TCGA-VQ-A8P2-01 13 28963992 28963992 C T FLT1 Missense_Mutation p.R637K 0.15 tolerated(0.27) possibly_damaging(0.644) TCGA-VQ-A8P2-01 13 30062051 30062051 C T MTUS2 Silent p.T1148T 0.32 TCGA-VQ-A8P2-01 13 30097538 30097538 G A SLC7A1 Missense_Mutation p.S305L 0.35 deleterious(0.01) probably_damaging(0.969) TCGA-VQ-A8P2-01 13 30110004 30110004 G A SLC7A1 Missense_Mutation p.L108F 0.62 deleterious(0.01) benign(0.443) TCGA-VQ-A8P2-01 13 30341397 30341397 G A UBL3 Silent p.L117L 0.31 TCGA-VQ-A8P2-01 13 31036700 31036700 G A HMGB1 Missense_Mutation p.A149V 0.49 deleterious(0.05) benign(0.319) TCGA-VQ-A8P2-01 13 31232363 31232363 C T USPL1 Missense_Mutation p.R717C 0.31 deleterious(0.01) benign(0.002) TCGA-VQ-A8P2-01 13 31848658 31848658 A G B3GALTL Missense_Mutation p.I225V 0.09 tolerated(0.05) benign(0.047) TCGA-VQ-A8P2-01 13 31848749 31848750 - T B3GALTL Frame_Shift_Ins p.L257Sfs*5 0.19 TCGA-VQ-A8P2-01 13 32749688 32749688 C T FRY Silent p.D780D 0.08 TCGA-VQ-A8P2-01 13 32813456 32813456 C A FRY Missense_Mutation p.F2162L 0.39 tolerated(0.41) probably_damaging(0.999) TCGA-VQ-A8P2-01 13 32912519 32912519 A - BRCA2 Frame_Shift_Del p.N1344Mfs*30 0.29 TCGA-VQ-A8P2-01 13 32913862 32913862 A G BRCA2 Silent p.V1790V 0.11 TCGA-VQ-A8P2-01 13 32913952 32913952 C T BRCA2 Silent p.C1820C 0.39 TCGA-VQ-A8P2-01 13 33110435 33110435 C A N4BP2L2 Intron 0.32 TCGA-VQ-A8P2-01 13 33222930 33222930 G A PDS5B Silent p.R7R 0.31 TCGA-VQ-A8P2-01 13 33225983 33225983 G T PDS5B Nonsense_Mutation p.E51* 0.34 TCGA-VQ-A8P2-01 13 33281111 33281111 G A PDS5B Missense_Mutation p.A633T 0.37 tolerated(0.18) benign(0.113) TCGA-VQ-A8P2-01 13 33591091 33591091 C T KL Silent p.R171R 0.64 TCGA-VQ-A8P2-01 13 33591195 33591195 G A KL Missense_Mutation p.G206D 0.33 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 13 33704147 33704147 G T STARD13 Missense_Mutation p.L223M 0.41 tolerated(0.25) benign(0.396) TCGA-VQ-A8P2-01 13 34392300 34392300 G A RFC3 5'UTR 0.48 TCGA-VQ-A8P2-01 13 35619170 35619170 G A NBEA Missense_Mutation p.E205K 0.36 tolerated(0.11) benign(0.15) TCGA-VQ-A8P2-01 13 36379901 36379901 T C DCLK1 Missense_Mutation p.M627V 0.36 deleterious(0) benign(0.043) TCGA-VQ-A8P2-01 13 36401865 36401865 A G DCLK1 Silent p.S438S 0.40 TCGA-VQ-A8P2-01 13 36909845 36909845 T G SPG20 Missense_Mutation p.E41D 0.40 deleterious(0.03) benign(0.06) TCGA-VQ-A8P2-01 13 37011903 37011903 G A CCNA1 Silent p.G145G 0.24 TCGA-VQ-A8P2-01 13 37422934 37422934 C T SMAD9 Missense_Mutation p.R428H 0.17 deleterious(0) probably_damaging(0.992) TCGA-VQ-A8P2-01 13 37439848 37439848 C T SMAD9 Missense_Mutation p.A277T 0.34 tolerated(0.21) possibly_damaging(0.704) TCGA-VQ-A8P2-01 13 37447013 37447013 T C SMAD9 Missense_Mutation p.N151S 0.45 tolerated(0.9) benign(0.101) TCGA-VQ-A8P2-01 13 38211678 38211678 T C TRPC4 Missense_Mutation p.N771D 0.41 tolerated(0.31) benign(0.023) TCGA-VQ-A8P2-01 13 38320331 38320331 C T TRPC4 Missense_Mutation p.E214K 0.55 tolerated(0.57) probably_damaging(0.991) TCGA-VQ-A8P2-01 13 39264528 39264528 A G FREM2 Missense_Mutation p.Y1016C 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A8P2-01 13 39451320 39451320 C T FREM2 Missense_Mutation p.L2871F 0.39 deleterious(0) probably_damaging(0.927) TCGA-VQ-A8P2-01 13 39586892 39586892 C T PROSER1 Missense_Mutation p.V833I 0.09 deleterious(0) probably_damaging(0.99) TCGA-VQ-A8P2-01 13 39586943 39586943 C T PROSER1 Missense_Mutation p.A816T 0.48 deleterious(0) benign(0.006) TCGA-VQ-A8P2-01 13 39612685 39612685 C A NHLRC3 5'UTR 0.14 TCGA-VQ-A8P2-01 13 39918063 39918063 T C LHFP 3'UTR 0.40 TCGA-VQ-A8P2-01 13 41767781 41767781 G A KBTBD7 Nonsense_Mutation p.R205* 0.43 TCGA-VQ-A8P2-01 13 41768119 41768119 G A KBTBD7 Missense_Mutation p.A92V 0.42 tolerated(0.34) probably_damaging(0.943) TCGA-VQ-A8P2-01 13 41943376 41943376 C T NAA16 Missense_Mutation p.A635V 0.11 tolerated(0.32) benign(0.039) TCGA-VQ-A8P2-01 13 42245219 42245219 C T VWA8 Missense_Mutation p.A1492T 0.12 tolerated(0.06) benign(0.178) TCGA-VQ-A8P2-01 13 42734213 42734213 A T DGKH Nonsense_Mutation p.K266* 0.37 TCGA-VQ-A8P2-01 13 42748260 42748260 G T DGKH Nonsense_Mutation p.E478* 0.39 TCGA-VQ-A8P2-01 13 42876653 42876653 C T AKAP11 Silent p.C1257C 0.32 TCGA-VQ-A8P2-01 13 43918855 43918855 C T ENOX1 Silent p.V285V 0.32 TCGA-VQ-A8P2-01 13 43935531 43935531 G T ENOX1 Missense_Mutation p.P89H 0.31 deleterious(0) probably_damaging(0.91) TCGA-VQ-A8P2-01 13 44455480 44455480 A G LACC1 Missense_Mutation p.D120G 0.35 tolerated(0.07) benign(0.008) TCGA-VQ-A8P2-01 13 45515399 45515399 A G NUFIP1 Missense_Mutation p.I477T 0.45 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 13 46093222 46093222 T C COG3 Missense_Mutation p.M716T 0.30 tolerated(0.1) benign(0.001) TCGA-VQ-A8P2-01 13 46287832 46287832 G A SPERT Silent p.A224A 0.38 TCGA-VQ-A8P2-01 13 46627844 46627844 C T CPB2 Missense_Mutation p.G393R 0.13 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 13 46708350 46708350 C A LCP1 Missense_Mutation p.G513V 0.08 deleterious(0) possibly_damaging(0.703) TCGA-VQ-A8P2-01 13 47255977 47255977 A G LRCH1 Silent p.P227P 0.29 TCGA-VQ-A8P2-01 13 48833065 48833065 C T ITM2B Missense_Mutation p.R233C 0.49 deleterious(0) benign(0.005) TCGA-VQ-A8P2-01 13 49860379 49860379 G A CDADC1 Missense_Mutation p.A478T 0.40 tolerated_low_confidence(0.78) benign(0) TCGA-VQ-A8P2-01 13 50080832 50080832 C T PHF11 Silent p.V52V 0.39 TCGA-VQ-A8P2-01 13 50108308 50108308 G A RCBTB1 Silent p.L516L 0.54 TCGA-VQ-A8P2-01 13 50126394 50126394 C T RCBTB1 Missense_Mutation p.G211S 0.79 deleterious(0.03) probably_damaging(0.997) TCGA-VQ-A8P2-01 13 50141452 50141452 C T RCBTB1 5'UTR 0.37 TCGA-VQ-A8P2-01 13 50623163 50623163 C T MIR16-1 RNA 0.33 TCGA-VQ-A8P2-01 13 52509127 52509127 G A ATP7B Missense_Mutation p.A1388V 0.40 deleterious(0.05) benign(0.067) TCGA-VQ-A8P2-01 13 52518247 52518247 C A ATP7B Nonsense_Mutation p.E1081* 0.33 TCGA-VQ-A8P2-01 13 52598860 52598860 G A ALG11 Missense_Mutation p.E332K 0.45 tolerated(0.25) benign(0.008) TCGA-VQ-A8P2-01 13 52602460 52602460 G A ALG11 Missense_Mutation p.V405M 0.45 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8P2-01 13 52603294 52603294 T C UTP14C Silent p.P118P 0.36 TCGA-VQ-A8P2-01 13 52742311 52742311 G A MRPS31P5 RNA 0.39 TCGA-VQ-A8P2-01 13 52952737 52952737 G T THSD1 Silent p.S456S 0.51 TCGA-VQ-A8P2-01 13 53422589 53422589 C T PCDH8 5'UTR 0.50 TCGA-VQ-A8P2-01 13 58208405 58208405 C T PCDH17 Silent p.D575D 0.31 TCGA-VQ-A8P2-01 13 58208703 58208703 G A PCDH17 Missense_Mutation p.A675T 0.34 deleterious(0.03) probably_damaging(0.99) TCGA-VQ-A8P2-01 13 61985609 61985609 C A PCDH20 Nonsense_Mutation p.E875* 0.19 TCGA-VQ-A8P2-01 13 61985896 61985896 A G PCDH20 Missense_Mutation p.V779A 0.13 tolerated(0.24) possibly_damaging(0.449) TCGA-VQ-A8P2-01 13 61986273 61986273 T G PCDH20 Silent p.P653P 0.21 TCGA-VQ-A8P2-01 13 61987430 61987430 G A PCDH20 Missense_Mutation p.R268C 0.12 deleterious(0.01) probably_damaging(0.959) TCGA-VQ-A8P2-01 13 61987489 61987489 C T PCDH20 Missense_Mutation p.R248H 0.47 tolerated(0.44) benign(0.064) TCGA-VQ-A8P2-01 13 61987553 61987553 G A PCDH20 Nonsense_Mutation p.R227* 0.35 TCGA-VQ-A8P2-01 13 66878917 66878917 C T PCDH9 Missense_Mutation p.R1195H 0.30 deleterious(0.01) benign(0.215) TCGA-VQ-A8P2-01 13 67205361 67205361 G A PCDH9 Silent p.G1107G 0.38 TCGA-VQ-A8P2-01 13 70535482 70535482 C A KLHL1 Missense_Mutation p.D259Y 0.35 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 13 76055436 76055436 G A TBC1D4 Silent p.C156C 0.50 TCGA-VQ-A8P2-01 13 76141380 76141380 A - UCHL3 Frame_Shift_Del p.K121Nfs*9 0.28 TCGA-VQ-A8P2-01 13 76378626 76378626 G T LMO7 Missense_Mutation p.R55I 0.26 deleterious(0) probably_damaging(0.993) TCGA-VQ-A8P2-01 13 76382299 76382299 G A LMO7 Missense_Mutation p.S394N 0.30 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 13 77636773 77636773 G T MYCBP2 Silent p.S4206S 0.38 TCGA-VQ-A8P2-01 13 77699593 77699593 G T MYCBP2 Missense_Mutation p.S2594Y 0.10 probably_damaging(0.992) TCGA-VQ-A8P2-01 13 77786142 77786142 T C MYCBP2 Missense_Mutation p.N1033D 0.22 probably_damaging(0.968) TCGA-VQ-A8P2-01 13 77837887 77837887 T C MYCBP2 Missense_Mutation p.E452G 0.35 benign(0.053) TCGA-VQ-A8P2-01 13 78191950 78191950 T C SCEL Silent p.L508L 0.31 TCGA-VQ-A8P2-01 13 79177393 79177393 C T POU4F1 Silent p.P23P 0.50 TCGA-VQ-A8P2-01 13 79177436 79177436 G T POU4F1 Missense_Mutation p.P9H 0.29 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-VQ-A8P2-01 13 79191258 79191258 C A RNF219 Splice_Site p.X213_splice 0.40 TCGA-VQ-A8P2-01 13 84453789 84453789 C T SLITRK1 Silent p.S618S 0.50 TCGA-VQ-A8P2-01 13 84454065 84454065 G T SLITRK1 Silent p.L526L 0.22 TCGA-VQ-A8P2-01 13 86369011 86369011 G T SLITRK6 Missense_Mutation p.L545I 0.28 tolerated(1) benign(0.006) TCGA-VQ-A8P2-01 13 88328681 88328681 T C SLITRK5 Silent p.S346S 0.11 TCGA-VQ-A8P2-01 13 88329622 88329622 C T SLITRK5 Missense_Mutation p.S660L 0.48 deleterious(0.01) benign(0.048) TCGA-VQ-A8P2-01 13 88329832 88329832 A G SLITRK5 Missense_Mutation p.H730R 0.40 tolerated(0.51) benign(0.02) TCGA-VQ-A8P2-01 13 95112467 95112467 C A DCT Missense_Mutation p.G353W 0.19 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 13 95121036 95121036 A G DCT Missense_Mutation p.W187R 0.42 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8P2-01 13 95257708 95257708 A G GPR180 Missense_Mutation p.K70R 0.33 tolerated(1) benign(0.006) TCGA-VQ-A8P2-01 13 96238281 96238281 T - DZIP1 Frame_Shift_Del p.E777Kfs*6 0.27 TCGA-VQ-A8P2-01 13 96258302 96258302 C A DZIP1 Missense_Mutation p.A478S 0.30 tolerated(0.22) benign(0.231) TCGA-VQ-A8P2-01 13 96536825 96536825 G T UGGT2 Missense_Mutation p.L1050I 0.35 deleterious(0.04) probably_damaging(0.999) TCGA-VQ-A8P2-01 13 98622034 98622034 A C IPO5 5'UTR 0.55 TCGA-VQ-A8P2-01 13 98642714 98642714 G T IPO5 Missense_Mutation p.A216S 0.38 tolerated(0.91) benign(0.341) TCGA-VQ-A8P2-01 13 98828941 98828941 G A RNF113B Missense_Mutation p.R184C 0.49 deleterious(0.01) possibly_damaging(0.568) TCGA-VQ-A8P2-01 13 98896746 98896746 T C FARP1 Intron 0.29 TCGA-VQ-A8P2-01 13 99118634 99118634 C A STK24 Missense_Mutation p.S272I 0.33 deleterious(0.05) possibly_damaging(0.718) TCGA-VQ-A8P2-01 13 99378625 99378625 G A SLC15A1 Nonsense_Mutation p.R34* 0.16 TCGA-VQ-A8P2-01 14 100728644 100728644 A - YY1 Frame_Shift_Del p.D231Ifs*25 0.39 TCGA-VQ-A8P2-01 14 100795770 100795770 G A SLC25A47 Missense_Mutation p.D239N 0.08 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 14 100995530 100995530 C T WDR25 Silent p.R466R 0.27 TCGA-VQ-A8P2-01 14 101439032 101439032 G A SNORD114-15 RNA 0.40 TCGA-VQ-A8P2-01 14 101442187 101442187 G A SNORD114-18 RNA 0.23 TCGA-VQ-A8P2-01 14 101493126 101493126 C T MIR329-1 RNA 0.33 TCGA-VQ-A8P2-01 14 101531862 101531862 G A MIR412 RNA 0.53 TCGA-VQ-A8P2-01 14 101531963 101531963 G A MIR369 RNA 0.31 TCGA-VQ-A8P2-01 14 102446861 102446861 C T DYNC1H1 Missense_Mutation p.A312V 0.46 possibly_damaging(0.893) TCGA-VQ-A8P2-01 14 102508461 102508461 G A DYNC1H1 Missense_Mutation p.G4072S 0.25 probably_damaging(1) TCGA-VQ-A8P2-01 14 102515807 102515807 C T DYNC1H1 Missense_Mutation p.T4468M 0.12 probably_damaging(0.932) TCGA-VQ-A8P2-01 14 102515839 102515839 G A DYNC1H1 Missense_Mutation p.V4479M 0.44 possibly_damaging(0.507) TCGA-VQ-A8P2-01 14 102550762 102550762 C T HSP90AA1 Missense_Mutation p.C496Y 0.09 deleterious_low_confidence(0) unknown(0) TCGA-VQ-A8P2-01 14 102674959 102674959 G A WDR20 Missense_Mutation p.R182Q 0.27 deleterious(0.01) benign(0.331) TCGA-VQ-A8P2-01 14 102699969 102699969 C A MOK Intron 0.36 TCGA-VQ-A8P2-01 14 102901223 102901223 C A TECPR2 Missense_Mutation p.S690Y 0.37 deleterious_low_confidence(0.01) benign(0.423) TCGA-VQ-A8P2-01 14 102904443 102904443 G A TECPR2 Missense_Mutation p.D827N 0.48 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 14 103342780 103342780 G A TRAF3 Missense_Mutation p.R163Q 0.41 tolerated(0.12) benign(0.006) TCGA-VQ-A8P2-01 14 103986842 103986842 C A CKB Missense_Mutation p.K247N 0.43 deleterious(0.03) possibly_damaging(0.819) TCGA-VQ-A8P2-01 14 104026132 104026132 G A BAG5 3'UTR 0.08 TCGA-VQ-A8P2-01 14 104471697 104471697 G A TDRD9 Silent p.P556P 0.46 TCGA-VQ-A8P2-01 14 104641432 104641432 G A KIF26A Silent p.T769T 0.15 TCGA-VQ-A8P2-01 14 105063337 105063337 C T TMEM179 Missense_Mutation p.V145I 0.38 tolerated(0.4) benign(0.091) TCGA-VQ-A8P2-01 14 105354069 105354069 T C CEP170B Missense_Mutation p.S1165P 0.55 deleterious(0.03) probably_damaging(0.97) TCGA-VQ-A8P2-01 14 105406587 105406587 G A AHNAK2 Silent p.D5067D 0.10 TCGA-VQ-A8P2-01 14 105415390 105415390 G A AHNAK2 Missense_Mutation p.A2133V 0.16 benign(0.198) TCGA-VQ-A8P2-01 14 105415618 105415618 G A AHNAK2 Missense_Mutation p.P2057L 0.93 benign(0.274) TCGA-VQ-A8P2-01 14 105419166 105419166 C T AHNAK2 Silent p.G874G 0.43 TCGA-VQ-A8P2-01 14 105419471 105419471 G A AHNAK2 Missense_Mutation p.L773F 0.42 benign(0.437) TCGA-VQ-A8P2-01 14 105518329 105518329 A G GPR132 Missense_Mutation p.Y49H 0.38 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 14 105614764 105614764 C T JAG2 Missense_Mutation p.C678Y 0.46 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 14 105688182 105688182 G A BRF1 Missense_Mutation p.A373V 0.33 tolerated(0.58) benign(0.007) TCGA-VQ-A8P2-01 14 105834841 105834841 C T PACS2 Missense_Mutation p.R236W 0.48 deleterious(0.03) benign(0.067) TCGA-VQ-A8P2-01 14 105847299 105847299 G A PACS2 Silent p.V377V 0.25 TCGA-VQ-A8P2-01 14 105930459 105930459 T C MTA1 Silent p.A389A 0.46 TCGA-VQ-A8P2-01 14 105936488 105936488 C T MTA1 Missense_Mutation p.A695V 0.17 tolerated(0.4) benign(0.229) TCGA-VQ-A8P2-01 14 105954675 105954675 G A CRIP1 Missense_Mutation p.G48D 0.12 deleterious(0.05) benign(0.247) TCGA-VQ-A8P2-01 14 105958493 105958493 G A C14orf80 Silent p.P92P 0.29 TCGA-VQ-A8P2-01 14 106110202 106110202 G A IGHG2 Missense_Mutation p.T139M 0.29 deleterious(0.05) probably_damaging(0.969) TCGA-VQ-A8P2-01 14 106208457 106208458 - CCA IGHG1 In_Frame_Ins p.V147dup 0.28 TCGA-VQ-A8P2-01 14 106471483 106471483 C A IGHV1-3 Missense_Mutation p.K38N 0.38 deleterious(0.02) benign(0.168) TCGA-VQ-A8P2-01 14 106478293 106478293 C T IGHV4-4 Nonsense_Mutation p.W55* 0.14 TCGA-VQ-A8P2-01 14 106791187 106791187 G A IGHV3-30 Missense_Mutation p.R57C 0.05 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-VQ-A8P2-01 14 106845369 106845369 G A IGHV3-35 Missense_Mutation p.T102M 0.47 tolerated_low_confidence(1) benign(0) TCGA-VQ-A8P2-01 14 106963108 106963108 C A IGHV1-45 Missense_Mutation p.Q58H 0.41 deleterious(0.01) probably_damaging(0.924) TCGA-VQ-A8P2-01 14 107034779 107034779 G A IGHV5-51 Nonsense_Mutation p.Q101* 0.11 TCGA-VQ-A8P2-01 14 19377953 19377953 C A OR11H12 Missense_Mutation p.F120L 0.22 deleterious(0.03) benign(0.356) TCGA-VQ-A8P2-01 14 19378150 19378151 - A OR11H12 Frame_Shift_Ins p.N187Kfs*4 0.17 TCGA-VQ-A8P2-01 14 19573114 19573114 A G POTEG Silent p.E404E 0.12 TCGA-VQ-A8P2-01 14 20216013 20216013 C T OR4Q3 Missense_Mutation p.L143F 0.16 tolerated(0.72) benign(0.006) TCGA-VQ-A8P2-01 14 20711850 20711852 TAC G OR11H4 Nonsense_Mutation p.Y300* 0.35 TCGA-VQ-A8P2-01 14 20764010 20764010 G A TTC5 Missense_Mutation p.H234Y 0.14 tolerated(1) benign(0.004) TCGA-VQ-A8P2-01 14 20825779 20825779 T - PARP2 Intron 0.32 TCGA-VQ-A8P2-01 14 20849116 20849116 C T TEP1 Missense_Mutation p.R1579Q 0.31 tolerated(0.5) benign(0.003) TCGA-VQ-A8P2-01 14 20859849 20859849 T C TEP1 Missense_Mutation p.H669R 0.35 deleterious(0.01) probably_damaging(0.969) TCGA-VQ-A8P2-01 14 20925014 20925014 G A APEX1 Missense_Mutation p.G145D 0.57 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8P2-01 14 21109464 21109464 A G OR6S1 Silent p.C129C 0.45 TCGA-VQ-A8P2-01 14 21424363 21424363 C T RNASE2 Nonsense_Mutation p.R145* 0.60 TCGA-VQ-A8P2-01 14 21490026 21490026 T C NDRG2 Silent p.P119P 0.53 TCGA-VQ-A8P2-01 14 21499277 21499277 A G TPPP2 Missense_Mutation p.I94V 0.33 tolerated(0.77) benign(0.019) TCGA-VQ-A8P2-01 14 21543276 21543276 G T ARHGEF40 Missense_Mutation p.G463W 0.30 tolerated(0.07) benign(0.009) TCGA-VQ-A8P2-01 14 21546604 21546604 G - ARHGEF40 Frame_Shift_Del p.A737Pfs*3 0.26 TCGA-VQ-A8P2-01 14 21547085 21547085 C T ARHGEF40 Silent p.D763D 0.33 TCGA-VQ-A8P2-01 14 21679402 21679402 T C HNRNPC Missense_Mutation p.N301D 0.08 tolerated_low_confidence(0.1) probably_damaging(0.952) TCGA-VQ-A8P2-01 14 21796599 21796599 C A RPGRIP1 Missense_Mutation p.P971H 0.31 deleterious(0.03) benign(0.128) TCGA-VQ-A8P2-01 14 21834661 21834661 G T SUPT16H Missense_Mutation p.A328D 0.08 tolerated(0.24) benign(0.038) TCGA-VQ-A8P2-01 14 21859623 21859623 G A CHD8 Missense_Mutation p.A2355V 0.16 tolerated(0.19) benign(0.006) TCGA-VQ-A8P2-01 14 21863216 21863216 G A CHD8 Missense_Mutation p.L1749F 0.27 deleterious(0.03) probably_damaging(0.994) TCGA-VQ-A8P2-01 14 21881129 21881129 G A CHD8 Silent p.Y723Y 0.21 TCGA-VQ-A8P2-01 14 21957370 21957371 - A TOX4 Frame_Shift_Ins p.Q209Afs*13 0.28 TCGA-VQ-A8P2-01 14 21961331 21961331 C A TOX4 Missense_Mutation p.P519H 0.41 deleterious(0.01) probably_damaging(0.99) TCGA-VQ-A8P2-01 14 21990936 21990936 T C SALL2 Missense_Mutation p.N976D 0.25 tolerated_low_confidence(0.07) benign(0.119) TCGA-VQ-A8P2-01 14 22386712 22386712 A G TRAV13-2 Missense_Mutation p.I41V 0.13 tolerated(0.09) benign(0.32) TCGA-VQ-A8P2-01 14 22392759 22392759 C T TRAV14DV4 Silent p.S94S 0.37 TCGA-VQ-A8P2-01 14 22962940 22962940 A G TRAJ45 Missense_Mutation p.T11A 0.38 unknown(0) TCGA-VQ-A8P2-01 14 22985306 22985306 C T TRAJ27 Missense_Mutation p.P20S 0.40 unknown(0) TCGA-VQ-A8P2-01 14 22994617 22994617 G A TRAJ20 3'Flank 0.19 TCGA-VQ-A8P2-01 14 23019563 23019563 G A TRAC Missense_Mutation p.A128T 0.10 tolerated(0.13) benign(0.343) TCGA-VQ-A8P2-01 14 23072355 23072355 C T ABHD4 Missense_Mutation p.T58M 0.11 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 14 23313003 23313003 C A MMP14 Missense_Mutation p.P312H 0.20 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 14 23315089 23315089 C T MMP14 Silent p.D530D 0.41 TCGA-VQ-A8P2-01 14 23344299 23344299 G A LRP10 Missense_Mutation p.R84H 0.33 tolerated(0.45) benign(0.003) TCGA-VQ-A8P2-01 14 23391747 23391747 C T PRMT5 Missense_Mutation p.R534H 0.34 deleterious(0) probably_damaging(0.993) TCGA-VQ-A8P2-01 14 23391757 23391757 C T PRMT5 Missense_Mutation p.D531N 0.45 tolerated(0.17) benign(0.232) TCGA-VQ-A8P2-01 14 23528239 23528239 G T ACIN1 3'UTR 0.50 TCGA-VQ-A8P2-01 14 23528365 23528365 G A ACIN1 Missense_Mutation p.R1340C 0.41 unknown(0) TCGA-VQ-A8P2-01 14 23858217 23858217 G A MYH6 Silent p.C1342C 0.17 TCGA-VQ-A8P2-01 14 23870077 23870077 G A MYH6 Silent p.S417S 0.47 TCGA-VQ-A8P2-01 14 23884313 23884313 G A MYH7 Missense_Mutation p.A1817V 0.11 deleterious(0.05) benign(0.106) TCGA-VQ-A8P2-01 14 23885485 23885485 C T MYH7 Missense_Mutation p.A1561T 0.27 tolerated(0.06) benign(0.042) TCGA-VQ-A8P2-01 14 23901999 23901999 G T MYH7 Nonsense_Mutation p.Y117* 0.09 TCGA-VQ-A8P2-01 14 24035506 24035506 C A AP1G2 Missense_Mutation p.S151I 0.31 deleterious(0) possibly_damaging(0.588) TCGA-VQ-A8P2-01 14 24435159 24435159 C T DHRS4 Silent p.I166I 0.47 TCGA-VQ-A8P2-01 14 24542844 24542844 G A CPNE6 Missense_Mutation p.R102Q 0.09 tolerated(0.41) benign(0.001) TCGA-VQ-A8P2-01 14 24546403 24546403 G A CPNE6 Missense_Mutation p.S447N 0.22 deleterious(0) benign(0.201) TCGA-VQ-A8P2-01 14 24566252 24566252 C T PCK2 Missense_Mutation p.H61Y 0.30 tolerated(0.44) probably_damaging(0.995) TCGA-VQ-A8P2-01 14 24567789 24567789 G A PCK2 Missense_Mutation p.R189H 0.23 tolerated(0.07) possibly_damaging(0.887) TCGA-VQ-A8P2-01 14 24589105 24589105 G T DCAF11 Missense_Mutation p.K364N 0.43 deleterious(0) probably_damaging(0.994) TCGA-VQ-A8P2-01 14 24600905 24600905 C T RP11-468E2.6 Missense_Mutation p.R233C 0.33 deleterious_low_confidence(0) possibly_damaging(0.835) TCGA-VQ-A8P2-01 14 24601815 24601815 T C FITM1 Missense_Mutation p.V221A 0.45 tolerated(0.39) possibly_damaging(0.454) TCGA-VQ-A8P2-01 14 24612855 24612855 T C PSME2 Missense_Mutation p.E193G 0.33 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 14 24624432 24624432 G A RNF31 Missense_Mutation p.A733T 0.46 tolerated(0.09) benign(0.009) TCGA-VQ-A8P2-01 14 24642564 24642564 T - REC8 Frame_Shift_Del p.F137Lfs*3 0.32 TCGA-VQ-A8P2-01 14 24646401 24646401 G A REC8 Missense_Mutation p.A226T 0.07 tolerated(0.06) probably_damaging(0.99) TCGA-VQ-A8P2-01 14 24655568 24655568 G A IPO4 Silent p.P310P 0.41 TCGA-VQ-A8P2-01 14 24656893 24656893 G A IPO4 Missense_Mutation p.P130S 0.43 tolerated(0.85) benign(0) TCGA-VQ-A8P2-01 14 24740154 24740154 C T RABGGTA Splice_Site p.X2_splice 0.43 TCGA-VQ-A8P2-01 14 24765746 24765746 T G DHRS1 Missense_Mutation p.M115L 0.29 tolerated(0.51) benign(0.002) TCGA-VQ-A8P2-01 14 24780221 24780221 G A LTB4R2 Silent p.L117L 0.16 TCGA-VQ-A8P2-01 14 24780643 24780643 C T LTB4R2 Missense_Mutation p.A258V 0.44 tolerated(0.22) benign(0.003) TCGA-VQ-A8P2-01 14 24799125 24799125 G A ADCY4 Silent p.Y386Y 0.16 TCGA-VQ-A8P2-01 14 24843569 24843569 C A NFATC4 Silent p.A653A 0.35 TCGA-VQ-A8P2-01 14 24868550 24868550 G A NYNRIN Missense_Mutation p.R33H 0.42 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 14 24877191 24877191 C T NYNRIN Silent p.S105S 0.35 TCGA-VQ-A8P2-01 14 24880346 24880346 C A NYNRIN Silent p.R827R 0.43 TCGA-VQ-A8P2-01 14 24885563 24885563 C A NYNRIN Silent p.V1536V 0.40 TCGA-VQ-A8P2-01 14 24897097 24897097 G T CBLN3 Silent p.P172P 0.11 TCGA-VQ-A8P2-01 14 31062798 31062798 C T G2E3 Nonsense_Mutation p.R161* 0.10 TCGA-VQ-A8P2-01 14 31858140 31858140 G A HEATR5A Missense_Mutation p.R282C 0.35 deleterious(0) probably_damaging(0.988) TCGA-VQ-A8P2-01 14 32561514 32561514 G T ARHGAP5 Nonsense_Mutation p.G547* 0.36 TCGA-VQ-A8P2-01 14 32902837 32902837 G A AKAP6 Missense_Mutation p.M46I 0.35 tolerated(0.24) benign(0) TCGA-VQ-A8P2-01 14 33014535 33014535 G A AKAP6 Missense_Mutation p.E226K 0.40 deleterious(0) probably_damaging(0.994) TCGA-VQ-A8P2-01 14 33201846 33201847 - T AKAP6 Intron 0.36 TCGA-VQ-A8P2-01 14 33292872 33292872 A G AKAP6 Silent p.E1951E 0.35 TCGA-VQ-A8P2-01 14 34243580 34243580 C T NPAS3 Missense_Mutation p.S297L 0.34 tolerated(0.05) possibly_damaging(0.885) TCGA-VQ-A8P2-01 14 35253041 35253041 G A BAZ1A Nonsense_Mutation p.R642* 0.40 TCGA-VQ-A8P2-01 14 35272164 35272164 C A BAZ1A Nonsense_Mutation p.E253* 0.25 TCGA-VQ-A8P2-01 14 35777232 35777232 C A PSMA6 Missense_Mutation p.L37I 0.37 tolerated(0.57) benign(0.082) TCGA-VQ-A8P2-01 14 36004802 36004802 C T INSM2 Silent p.H448H 0.44 TCGA-VQ-A8P2-01 14 36005109 36005109 G T INSM2 Nonsense_Mutation p.E551* 0.29 TCGA-VQ-A8P2-01 14 36142147 36142147 C T RALGAPA1 Missense_Mutation p.D1161N 0.26 deleterious(0) probably_damaging(0.982) TCGA-VQ-A8P2-01 14 36785955 36785955 C T MBIP Missense_Mutation p.A65T 0.38 tolerated(0.22) benign(0.011) TCGA-VQ-A8P2-01 14 37132591 37132591 C T PAX9 Missense_Mutation p.P165L 0.42 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 14 37736194 37736194 C T MIPOL1 Missense_Mutation p.T24M 0.56 deleterious_low_confidence(0.03) possibly_damaging(0.809) TCGA-VQ-A8P2-01 14 38311567 38311568 - A TTC6 3'UTR 0.26 TCGA-VQ-A8P2-01 14 38724315 38724315 G A CLEC14A Missense_Mutation p.R305C 0.42 tolerated(0.14) benign(0.292) TCGA-VQ-A8P2-01 14 39648327 39648327 T C PNN Silent p.L177L 0.41 TCGA-VQ-A8P2-01 14 39649828 39649828 G A PNN Silent p.A305A 0.53 TCGA-VQ-A8P2-01 14 39722401 39722401 C T MIA2 Missense_Mutation p.A638V 0.38 tolerated(0.16) benign(0.008) TCGA-VQ-A8P2-01 14 39819469 39819469 C T CTAGE5 3'UTR 0.22 TCGA-VQ-A8P2-01 14 45475363 45475363 G T FAM179B Nonsense_Mutation p.G933* 0.32 TCGA-VQ-A8P2-01 14 45523752 45523752 G A FAM179B Missense_Mutation p.R1467K 0.21 tolerated(0.14) benign(0.025) TCGA-VQ-A8P2-01 14 45645955 45645955 A - FANCM Frame_Shift_Del p.V1336Lfs*2 0.32 TCGA-VQ-A8P2-01 14 45665411 45665411 G A FANCM Missense_Mutation p.A1793T 0.35 tolerated(0.27) benign(0.024) TCGA-VQ-A8P2-01 14 45668052 45668052 G A FANCM Silent p.Q1974Q 0.40 TCGA-VQ-A8P2-01 14 50195715 50195715 C T KLHDC1 Silent p.G213G 0.35 TCGA-VQ-A8P2-01 14 50298924 50298924 C T NEMF Splice_Site p.X269_splice 0.31 TCGA-VQ-A8P2-01 14 50360592 50360592 T G ARF6 Silent p.G46G 0.37 TCGA-VQ-A8P2-01 14 51094793 51094793 G A ATL1 Silent p.Q388Q 0.46 TCGA-VQ-A8P2-01 14 51227045 51227045 G A NIN Silent p.T643T 0.11 TCGA-VQ-A8P2-01 14 51352546 51352547 TA - ABHD12B Frame_Shift_Del p.Y199* 0.31 TCGA-VQ-A8P2-01 14 51370817 51370817 A G ABHD12B Missense_Mutation p.Y323C 0.43 deleterious(0.02) probably_damaging(1) TCGA-VQ-A8P2-01 14 51410923 51410923 G A PYGL Missense_Mutation p.R67C 0.26 deleterious(0) probably_damaging(0.99) TCGA-VQ-A8P2-01 14 51448627 51448627 G A TRIM9 Missense_Mutation p.R600C 0.31 deleterious(0) benign(0.112) TCGA-VQ-A8P2-01 14 51561059 51561059 G T TRIM9 Missense_Mutation p.P200H 0.43 deleterious(0.05) possibly_damaging(0.593) TCGA-VQ-A8P2-01 14 52174910 52174910 C T FRMD6 Nonsense_Mutation p.R225* 0.13 TCGA-VQ-A8P2-01 14 52179267 52179267 G A FRMD6 Missense_Mutation p.V283M 0.37 deleterious(0.04) benign(0.438) TCGA-VQ-A8P2-01 14 52535542 52535542 G A NID2 Silent p.A57A 0.40 TCGA-VQ-A8P2-01 14 52535554 52535554 G A NID2 Silent p.D53D 0.39 TCGA-VQ-A8P2-01 14 52981652 52981652 C A TXNDC16 Missense_Mutation p.G184V 0.09 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8P2-01 14 53386064 53386064 T - FERMT2 Frame_Shift_Del p.D57Ifs*17 0.30 TCGA-VQ-A8P2-01 14 54418735 54418735 C T BMP4 Missense_Mutation p.R69H 0.42 tolerated(0.06) benign(0.082) TCGA-VQ-A8P2-01 14 54976667 54976667 G A CGRRF1 5'UTR 0.40 TCGA-VQ-A8P2-01 14 55169001 55169001 C T SAMD4A Missense_Mutation p.R140C 0.29 deleterious(0) probably_damaging(0.977) TCGA-VQ-A8P2-01 14 55241716 55241716 C T SAMD4A Missense_Mutation p.R594W 0.09 deleterious(0.03) probably_damaging(0.983) TCGA-VQ-A8P2-01 14 57072362 57072362 C T TMEM260 Silent p.C199C 0.37 TCGA-VQ-A8P2-01 14 57270973 57270973 C T OTX2 Missense_Mutation p.R69Q 0.53 tolerated(0.13) benign(0.331) TCGA-VQ-A8P2-01 14 57271039 57271039 C T OTX2 Missense_Mutation p.R47H 0.41 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 14 57735401 57735401 G A EXOC5 5'UTR 0.42 TCGA-VQ-A8P2-01 14 57858299 57858299 G A NAA30 Silent p.G208G 0.28 TCGA-VQ-A8P2-01 14 58833708 58833708 G A ARID4A Missense_Mutation p.D1211N 0.47 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 14 58917321 58917321 C T KIAA0586 Missense_Mutation p.T382M 0.17 tolerated(0.3) benign(0.012) TCGA-VQ-A8P2-01 14 59930659 59930659 C T GPR135 Missense_Mutation p.R429H 0.44 deleterious(0.02) benign(0.051) TCGA-VQ-A8P2-01 14 59931328 59931328 G A GPR135 Missense_Mutation p.S206L 0.62 deleterious(0) probably_damaging(0.962) TCGA-VQ-A8P2-01 14 59950965 59950965 C T L3HYPDH Missense_Mutation p.D24N 0.31 deleterious(0) probably_damaging(0.932) TCGA-VQ-A8P2-01 14 59965558 59965558 G T JKAMP Missense_Mutation p.S191I 0.22 deleterious(0) probably_damaging(0.938) TCGA-VQ-A8P2-01 14 60063319 60063319 A C RTN1 3'UTR 0.43 TCGA-VQ-A8P2-01 14 60063489 60063489 G T RTN1 Missense_Mutation p.P769T 0.33 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 14 60619659 60619659 G A DHRS7 Missense_Mutation p.R211W 0.44 deleterious(0) possibly_damaging(0.901) TCGA-VQ-A8P2-01 14 61186924 61186924 G T SIX4 Missense_Mutation p.S368Y 0.32 deleterious(0) probably_damaging(0.993) TCGA-VQ-A8P2-01 14 61512064 61512064 A G SLC38A6 Missense_Mutation p.S249G 0.23 deleterious(0.02) benign(0.105) TCGA-VQ-A8P2-01 14 61512872 61512872 C T SLC38A6 Silent p.Y304Y 0.24 TCGA-VQ-A8P2-01 14 64484387 64484387 A - SYNE2 Frame_Shift_Del p.N1656Mfs*19 0.32 TCGA-VQ-A8P2-01 14 64488704 64488704 A - SYNE2 Frame_Shift_Del p.S1830Vfs*11 0.30 TCGA-VQ-A8P2-01 14 64587647 64587647 T C SYNE2 Silent p.H4342H 0.08 TCGA-VQ-A8P2-01 14 64691231 64691231 C A SYNE2 Missense_Mutation p.P6812H 0.13 benign(0.093) TCGA-VQ-A8P2-01 14 64692112 64692112 C A SYNE2 Silent p.L6864L 0.40 TCGA-VQ-A8P2-01 14 64694263 64694263 C T SYNE2 3'Flank 0.42 TCGA-VQ-A8P2-01 14 64694323 64694323 C T SYNE2 3'Flank 0.40 TCGA-VQ-A8P2-01 14 65007550 65007550 G A HSPA2 5'UTR 0.50 TCGA-VQ-A8P2-01 14 65008195 65008195 G A HSPA2 Missense_Mutation p.V210M 0.11 deleterious_low_confidence(0) probably_damaging(1) TCGA-VQ-A8P2-01 14 65008238 65008238 C T HSPA2 Missense_Mutation p.S224F 0.47 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-VQ-A8P2-01 14 65053591 65053591 C T PPP1R36 Silent p.F235F 0.37 TCGA-VQ-A8P2-01 14 65240061 65240061 C T SPTB Silent p.K1685K 0.37 TCGA-VQ-A8P2-01 14 65241977 65241977 G A SPTB Missense_Mutation p.R1570W 0.12 tolerated(0.12) benign(0.003) TCGA-VQ-A8P2-01 14 65252321 65252321 G A SPTB Silent p.A1263A 0.39 TCGA-VQ-A8P2-01 14 65499332 65499332 G A FNTB Missense_Mutation p.A204T 0.38 tolerated(0.13) benign(0.164) TCGA-VQ-A8P2-01 14 65520029 65520029 C T FNTB Silent p.C343C 0.36 TCGA-VQ-A8P2-01 14 65550825 65550825 G A MAX Intron 0.42 TCGA-VQ-A8P2-01 14 66188714 66188714 C T FUT8 Missense_Mutation p.L353F 0.46 deleterious(0.01) probably_damaging(0.916) TCGA-VQ-A8P2-01 14 67391008 67391008 G A GPHN Missense_Mutation p.R276Q 0.38 tolerated(0.62) benign(0) TCGA-VQ-A8P2-01 14 67576952 67576952 C T GPHN Silent p.T463T 0.15 TCGA-VQ-A8P2-01 14 67759337 67759337 C - MPP5 Frame_Shift_Del p.Q160Rfs*14 0.26 TCGA-VQ-A8P2-01 14 68038617 68038617 G T PLEKHH1 Missense_Mutation p.R528I 0.33 deleterious(0) probably_damaging(0.957) TCGA-VQ-A8P2-01 14 68038890 68038890 G A PLEKHH1 Missense_Mutation p.A542T 0.75 deleterious(0) possibly_damaging(0.799) TCGA-VQ-A8P2-01 14 68151864 68151864 C T RDH11 Missense_Mutation p.R241Q 0.34 deleterious(0.01) probably_damaging(0.99) TCGA-VQ-A8P2-01 14 68249737 68249737 G A ZFYVE26 Nonsense_Mutation p.R1378* 0.40 TCGA-VQ-A8P2-01 14 69256597 69256598 - G ZFP36L1 Frame_Shift_Ins p.T224Hfs*13 0.36 TCGA-VQ-A8P2-01 14 69387781 69387781 G A ACTN1 Silent p.N94N 0.40 TCGA-VQ-A8P2-01 14 69557836 69557836 A G DCAF5 Intron 0.34 TCGA-VQ-A8P2-01 14 70634230 70634230 G T SLC8A3 Missense_Mutation p.L304M 0.41 tolerated(0.25) benign(0.002) TCGA-VQ-A8P2-01 14 70714463 70714463 C T ADAM21P1 RNA 0.29 TCGA-VQ-A8P2-01 14 71051479 71051479 G T MED6 3'UTR 0.08 TCGA-VQ-A8P2-01 14 72191426 72191426 G A SIPA1L1 Silent p.R1517R 0.52 TCGA-VQ-A8P2-01 14 73220023 73220023 G A DPF3 Nonsense_Mutation p.R84* 0.41 TCGA-VQ-A8P2-01 14 73421100 73421100 C A DCAF4 Missense_Mutation p.S305Y 0.39 deleterious(0) possibly_damaging(0.845) TCGA-VQ-A8P2-01 14 73730971 73730971 G A PAPLN Missense_Mutation p.D945N 0.49 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 14 73989860 73989860 G A HEATR4 5'UTR 0.40 TCGA-VQ-A8P2-01 14 74009935 74009935 G A ACOT1 Missense_Mutation p.R281H 0.41 deleterious(0.01) benign(0.044) TCGA-VQ-A8P2-01 14 74061754 74061755 - A ACOT4 Frame_Shift_Ins p.G223Rfs*14 0.31 TCGA-VQ-A8P2-01 14 74086218 74086218 C T ACOT6 Missense_Mutation p.A100V 0.14 deleterious(0.02) benign(0.118) TCGA-VQ-A8P2-01 14 74196447 74196447 C T ELMSAN1 Missense_Mutation p.R664Q 0.43 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 14 74206174 74206174 G A ELMSAN1 Nonsense_Mutation p.R180* 0.41 TCGA-VQ-A8P2-01 14 74360569 74360569 G T ZNF410 Missense_Mutation p.D35Y 0.12 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-VQ-A8P2-01 14 74398237 74398237 G A ZNF410 3'UTR 0.17 TCGA-VQ-A8P2-01 14 74409330 74409330 G T FAM161B Missense_Mutation p.N401K 0.41 tolerated(0.75) benign(0.017) TCGA-VQ-A8P2-01 14 74413239 74413239 G A FAM161B Missense_Mutation p.P105S 0.33 tolerated(0.14) benign(0.243) TCGA-VQ-A8P2-01 14 74426199 74426199 T A COQ6 Missense_Mutation p.F289I 0.31 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 14 74427995 74427995 G A COQ6 Silent p.R337R 0.25 TCGA-VQ-A8P2-01 14 74824620 74824620 G A VRTN Silent p.P378P 0.18 TCGA-VQ-A8P2-01 14 74947476 74947476 G A NPC2 Silent p.L124L 0.41 TCGA-VQ-A8P2-01 14 74999145 74999145 C T LTBP2 Silent p.S657S 0.27 TCGA-VQ-A8P2-01 14 75078513 75078513 C T LTBP2 Silent p.P45P 0.62 TCGA-VQ-A8P2-01 14 75266250 75266250 C T YLPM1 Missense_Mutation p.A1417V 0.37 benign(0.05) TCGA-VQ-A8P2-01 14 75368996 75368996 C T DLST Missense_Mutation p.A442V 0.52 tolerated(0.45) benign(0.014) TCGA-VQ-A8P2-01 14 75471480 75471480 C T EIF2B2 Silent p.H158H 0.40 TCGA-VQ-A8P2-01 14 75475902 75475902 G A EIF2B2 3'UTR 0.09 TCGA-VQ-A8P2-01 14 75520141 75520141 A G ACYP1 3'UTR 0.11 TCGA-VQ-A8P2-01 14 76437955 76437955 G T TGFB3 Silent p.V153V 0.35 TCGA-VQ-A8P2-01 14 77873101 77873101 C T NOXRED1 Silent p.T216T 0.24 TCGA-VQ-A8P2-01 14 77907409 77907409 C T VIPAS39 Silent p.A254A 0.34 TCGA-VQ-A8P2-01 14 77942258 77942258 C A ISM2 Missense_Mutation p.D466Y 0.53 deleterious(0) probably_damaging(0.988) TCGA-VQ-A8P2-01 14 78140396 78140396 G T ALKBH1 Missense_Mutation p.P310H 0.25 deleterious(0) probably_damaging(0.967) TCGA-VQ-A8P2-01 14 78177217 78177217 T C SLIRP Missense_Mutation p.V45A 0.38 deleterious(0) possibly_damaging(0.803) TCGA-VQ-A8P2-01 14 78353558 78353558 G A ADCK1 Missense_Mutation p.R183Q 0.45 tolerated(1) benign(0.001) TCGA-VQ-A8P2-01 14 79933607 79933607 C A NRXN3 Silent p.L729L 0.42 TCGA-VQ-A8P2-01 14 81371232 81371232 C T CEP128 Silent p.G135G 0.39 TCGA-VQ-A8P2-01 14 81606081 81606081 G A TSHR Missense_Mutation p.E251K 0.32 tolerated(1) benign(0.04) TCGA-VQ-A8P2-01 14 81659009 81659009 C T GTF2A1 Missense_Mutation p.A263T 0.38 tolerated(0.75) benign(0.002) TCGA-VQ-A8P2-01 14 81736907 81736907 G T STON2 Intron 0.10 TCGA-VQ-A8P2-01 14 81952777 81952777 G A SEL1L Nonsense_Mutation p.R552* 0.13 TCGA-VQ-A8P2-01 14 81953757 81953757 G A SEL1L Nonsense_Mutation p.R537* 0.15 TCGA-VQ-A8P2-01 14 81993086 81993086 G A SEL1L Missense_Mutation p.R111W 0.45 deleterious_low_confidence(0.01) benign(0.001) TCGA-VQ-A8P2-01 14 81993207 81993207 G T SEL1L Silent p.S70S 0.42 TCGA-VQ-A8P2-01 14 88945688 88945688 C T PTPN21 Missense_Mutation p.G696D 0.22 tolerated_low_confidence(0.42) benign(0.012) TCGA-VQ-A8P2-01 14 89038504 89038504 G A ZC3H14 Silent p.A122A 0.40 TCGA-VQ-A8P2-01 14 89093216 89093216 C T EML5 Missense_Mutation p.R1569Q 0.14 tolerated(0.27) benign(0.038) TCGA-VQ-A8P2-01 14 89343705 89343705 A G TTC8 Missense_Mutation p.D500G 0.37 deleterious(0.04) probably_damaging(0.991) TCGA-VQ-A8P2-01 14 90429547 90429547 C T TDP1 Missense_Mutation p.T30I 0.46 deleterious_low_confidence(0.01) possibly_damaging(0.675) TCGA-VQ-A8P2-01 14 91211187 91211187 A G TTC7B Silent p.C175C 0.12 TCGA-VQ-A8P2-01 14 91211245 91211245 G A TTC7B Missense_Mutation p.P156L 0.11 deleterious(0.02) possibly_damaging(0.548) TCGA-VQ-A8P2-01 14 91413793 91413793 C T RPS6KA5 Missense_Mutation p.E166K 0.09 deleterious(0) probably_damaging(0.969) TCGA-VQ-A8P2-01 14 91780408 91780408 G A CCDC88C Silent p.R584R 0.42 TCGA-VQ-A8P2-01 14 91948320 91948320 T - SMEK1 Frame_Shift_Del p.K172Sfs*31 0.31 TCGA-VQ-A8P2-01 14 92471725 92471725 C T TRIP11 Silent p.L865L 0.45 TCGA-VQ-A8P2-01 14 92472435 92472435 G A TRIP11 Nonsense_Mutation p.Q629* 0.44 TCGA-VQ-A8P2-01 14 92555089 92555089 G A ATXN3 Nonsense_Mutation p.Q154* 0.07 TCGA-VQ-A8P2-01 14 92628095 92628095 T C CPSF2 3'UTR 0.23 TCGA-VQ-A8P2-01 14 93142918 93142918 G T RIN3 Nonsense_Mutation p.E812* 0.19 TCGA-VQ-A8P2-01 14 93273226 93273226 G T GOLGA5 Missense_Mutation p.E230D 0.38 deleterious(0.01) probably_damaging(0.996) TCGA-VQ-A8P2-01 14 93424635 93424635 T C ITPK1 Missense_Mutation p.N194S 0.21 deleterious(0.03) possibly_damaging(0.505) TCGA-VQ-A8P2-01 14 93429114 93429114 C T ITPK1 Missense_Mutation p.G149S 0.34 tolerated(0.05) benign(0.135) TCGA-VQ-A8P2-01 14 93708947 93708947 G A BTBD7 Missense_Mutation p.P1024L 0.29 deleterious_low_confidence(0.03) benign(0.001) TCGA-VQ-A8P2-01 14 94100969 94100969 G A UNC79 Missense_Mutation p.S1763N 0.38 deleterious_low_confidence(0.02) possibly_damaging(0.781) TCGA-VQ-A8P2-01 14 94158100 94158100 C T UNC79 Silent p.S2288S 0.43 TCGA-VQ-A8P2-01 14 94395123 94395123 C A FAM181A Silent p.P226P 0.58 TCGA-VQ-A8P2-01 14 94505505 94505505 G A OTUB2 Intron 0.19 TCGA-VQ-A8P2-01 14 95033456 95033456 C T SERPINA4 Missense_Mutation p.R267W 0.35 tolerated(0.19) benign(0.11) TCGA-VQ-A8P2-01 14 95053740 95053740 C T SERPINA5 Missense_Mutation p.P14L 0.47 tolerated(0.88) possibly_damaging(0.902) TCGA-VQ-A8P2-01 14 95053741 95053741 T A SERPINA5 Silent p.P14P 0.39 TCGA-VQ-A8P2-01 14 95078751 95078751 G A SERPINA3 5'UTR 0.39 TCGA-VQ-A8P2-01 14 95234807 95234807 C T GSC 3'UTR 0.18 TCGA-VQ-A8P2-01 14 96137691 96137691 G T TCL6 RNA 0.34 TCGA-VQ-A8P2-01 14 96707037 96707037 C T BDKRB2 Silent p.L124L 0.40 TCGA-VQ-A8P2-01 14 96730980 96730980 A G BDKRB1 Missense_Mutation p.T321A 0.34 tolerated(0.29) benign(0.045) TCGA-VQ-A8P2-01 14 96864584 96864584 C T AK7 Missense_Mutation p.A93V 0.08 tolerated(0.5) benign(0.062) TCGA-VQ-A8P2-01 14 96998943 96998943 G A PAPOLA Missense_Mutation p.A265T 0.30 deleterious(0.01) possibly_damaging(0.873) TCGA-VQ-A8P2-01 14 99865451 99865451 G A SETD3 Silent p.S450S 0.31 TCGA-VQ-A8P2-01 14 99924677 99924677 T G SETD3 Missense_Mutation p.D205A 0.07 deleterious(0.02) probably_damaging(0.969) TCGA-VQ-A8P2-01 15 100591884 100591884 G A ADAMTS17 Missense_Mutation p.P783L 0.06 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 15 100636612 100636612 C T ADAMTS17 Missense_Mutation p.G696S 0.50 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 15 101009657 101009657 C T CERS3 Silent p.T257T 0.53 TCGA-VQ-A8P2-01 15 101013181 101013181 C T CERS3 Missense_Mutation p.R229H 0.31 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 15 101041961 101041961 C T CERS3 Missense_Mutation p.V32I 0.52 tolerated(0.16) benign(0.026) TCGA-VQ-A8P2-01 15 101098901 101098901 G A RNU6-181P 3'Flank 0.18 TCGA-VQ-A8P2-01 15 101464888 101464888 G A LRRK1 Silent p.P17P 0.45 TCGA-VQ-A8P2-01 15 101464933 101464933 C T LRRK1 Silent p.N32N 0.43 TCGA-VQ-A8P2-01 15 101552265 101552265 C A LRRK1 Missense_Mutation p.A445D 0.38 tolerated(0.24) benign(0.082) TCGA-VQ-A8P2-01 15 101593494 101593494 C T LRRK1 Missense_Mutation p.A1308V 0.30 tolerated(0.42) probably_damaging(0.969) TCGA-VQ-A8P2-01 15 101718112 101718112 G A CHSY1 Silent p.C630C 0.36 TCGA-VQ-A8P2-01 15 101718165 101718165 C T CHSY1 Missense_Mutation p.A613T 0.30 deleterious(0) probably_damaging(0.943) TCGA-VQ-A8P2-01 15 101718899 101718899 C T CHSY1 Missense_Mutation p.R368H 0.32 tolerated(0.15) benign(0.052) TCGA-VQ-A8P2-01 15 101845485 101845485 C T PCSK6 Missense_Mutation p.R962H 0.33 deleterious_low_confidence(0.04) probably_damaging(0.923) TCGA-VQ-A8P2-01 15 101938741 101938741 C A PCSK6 Missense_Mutation p.E287D 0.35 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 15 20496662 20496662 G A CHEK2P2 RNA 0.21 TCGA-VQ-A8P2-01 15 20644017 20644017 G A HERC2P3 RNA 0.29 TCGA-VQ-A8P2-01 15 23049279 23049279 C T NIPA1 Silent p.A180A 0.36 TCGA-VQ-A8P2-01 15 23303892 23303892 C A HERC2P2 RNA 0.18 TCGA-VQ-A8P2-01 15 23810912 23810912 C T MKRN3 5'UTR 0.38 TCGA-VQ-A8P2-01 15 24921415 24921415 C T NPAP1 Missense_Mutation p.A134V 0.56 tolerated(0.92) possibly_damaging(0.8) TCGA-VQ-A8P2-01 15 24921909 24921909 G A NPAP1 Missense_Mutation p.G299R 0.32 tolerated(0.21) possibly_damaging(0.857) TCGA-VQ-A8P2-01 15 25349836 25349836 C T SNHG14 RNA 0.39 TCGA-VQ-A8P2-01 15 25429533 25429533 C T SNORD115-8 RNA 0.11 TCGA-VQ-A8P2-01 15 25436624 25436624 A G SNORD115-12 RNA 0.04 TCGA-VQ-A8P2-01 15 25448282 25448282 C T SNORD115-20 5'Flank 0.37 TCGA-VQ-A8P2-01 15 25463653 25463653 G A SNORD115-27 5'Flank 0.20 TCGA-VQ-A8P2-01 15 25468317 25468317 G T SNORD115-27 3'Flank 0.36 TCGA-VQ-A8P2-01 15 25947098 25947098 C T ATP10A Missense_Mutation p.D909N 0.45 tolerated(0.25) benign(0.037) TCGA-VQ-A8P2-01 15 25966912 25966912 C T ATP10A Missense_Mutation p.G419R 0.17 deleterious(0) probably_damaging(0.986) TCGA-VQ-A8P2-01 15 25969147 25969147 C T ATP10A Missense_Mutation p.R334Q 0.33 tolerated(0.5) benign(0.041) TCGA-VQ-A8P2-01 15 25971230 25971230 C T ATP10A Splice_Site p.X283_splice 0.37 TCGA-VQ-A8P2-01 15 26107941 26107941 C T ATP10A Silent p.P101P 0.36 TCGA-VQ-A8P2-01 15 26866465 26866465 G A GABRB3 Missense_Mutation p.L153F 0.43 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 15 27128667 27128667 C T GABRA5 Missense_Mutation p.R154W 0.33 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 15 28000593 28000593 A G OCA2 Missense_Mutation p.S820P 0.36 deleterious(0) probably_damaging(0.953) TCGA-VQ-A8P2-01 15 28369337 28369337 G A HERC2 Missense_Mutation p.A4345V 0.30 benign(0.002) TCGA-VQ-A8P2-01 15 28386992 28386992 C T HERC2 Missense_Mutation p.V3901M 0.18 possibly_damaging(0.45) TCGA-VQ-A8P2-01 15 28389844 28389844 G A HERC2 Silent p.T3705T 0.15 TCGA-VQ-A8P2-01 15 28459224 28459224 C A HERC2 Missense_Mutation p.G2185W 0.40 possibly_damaging(0.491) TCGA-VQ-A8P2-01 15 30008891 30008891 C T TJP1 Missense_Mutation p.A1376T 0.31 tolerated_low_confidence(0.09) benign(0.002) TCGA-VQ-A8P2-01 15 30010771 30010771 A G TJP1 Missense_Mutation p.F1192S 0.24 tolerated_low_confidence(0.33) benign(0.12) TCGA-VQ-A8P2-01 15 31318457 31318457 C T TRPM1 Missense_Mutation p.E1189K 0.43 deleterious(0) benign(0.148) TCGA-VQ-A8P2-01 15 31355362 31355362 C T TRPM1 Silent p.S325S 0.34 TCGA-VQ-A8P2-01 15 31664281 31664281 C T KLF13 Missense_Mutation p.R216W 0.20 deleterious(0) possibly_damaging(0.898) TCGA-VQ-A8P2-01 15 31776357 31776357 G A OTUD7A Silent p.L641L 0.40 TCGA-VQ-A8P2-01 15 32323125 32323125 G T CHRNA7 Missense_Mutation p.R56M 0.37 deleterious(0.01) probably_damaging(0.985) TCGA-VQ-A8P2-01 15 32921822 32921822 C T ARHGAP11A Missense_Mutation p.L322F 0.08 deleterious(0.02) possibly_damaging(0.655) TCGA-VQ-A8P2-01 15 32926192 32926192 C T ARHGAP11A Nonsense_Mutation p.R432* 0.32 TCGA-VQ-A8P2-01 15 33256348 33256348 G T FMN1 Missense_Mutation p.P810H 0.40 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 15 33765647 33765647 G A RYR3 Missense_Mutation p.A27T 0.09 benign(0.086) TCGA-VQ-A8P2-01 15 33855117 33855117 C A RYR3 Missense_Mutation p.S351Y 0.25 probably_damaging(0.958) TCGA-VQ-A8P2-01 15 33945047 33945047 T C RYR3 Missense_Mutation p.F1424S 0.11 probably_damaging(1) TCGA-VQ-A8P2-01 15 34021137 34021137 C T RYR3 Silent p.R2371R 0.38 TCGA-VQ-A8P2-01 15 34130129 34130129 T G RYR3 Missense_Mutation p.F3983C 0.42 probably_damaging(0.997) TCGA-VQ-A8P2-01 15 34168149 34168149 T C AVEN Missense_Mutation p.S165G 0.43 tolerated(0.66) benign(0.004) TCGA-VQ-A8P2-01 15 34295260 34295260 C A AVEN Missense_Mutation p.D140Y 0.08 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8P2-01 15 34393870 34393870 C T EMC7 Silent p.K57K 0.11 TCGA-VQ-A8P2-01 15 34549881 34549881 G A SLC12A6 Missense_Mutation p.L218F 0.42 tolerated(0.13) probably_damaging(0.952) TCGA-VQ-A8P2-01 15 35045413 35045413 A G GJD2 Missense_Mutation p.Y78H 0.24 deleterious(0) probably_damaging(0.993) TCGA-VQ-A8P2-01 15 35082710 35082710 G T ACTC1 Missense_Mutation p.S346Y 0.15 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-VQ-A8P2-01 15 35185899 35185899 C T AQR Missense_Mutation p.E846K 0.10 tolerated(0.22) benign(0.405) TCGA-VQ-A8P2-01 15 37390266 37390266 C T MEIS2 Silent p.Q49Q 0.43 TCGA-VQ-A8P2-01 15 38229074 38229074 G A TMCO5A Missense_Mutation p.R56Q 0.48 tolerated(0.59) benign(0.024) TCGA-VQ-A8P2-01 15 38235576 38235576 G A TMCO5A Missense_Mutation p.E202K 0.41 tolerated(0.26) benign(0.002) TCGA-VQ-A8P2-01 15 38773532 38773532 C T FAM98B Missense_Mutation p.R257C 0.12 deleterious(0.03) benign(0.443) TCGA-VQ-A8P2-01 15 40030356 40030356 T C FSIP1 Missense_Mutation p.K276R 0.45 tolerated(0.2) possibly_damaging(0.449) TCGA-VQ-A8P2-01 15 40094389 40094389 C T GPR176 Missense_Mutation p.M164I 0.11 tolerated(1) benign(0.001) TCGA-VQ-A8P2-01 15 40265871 40265871 A G EIF2AK4 Missense_Mutation p.Q580R 0.47 deleterious(0.05) benign(0.041) TCGA-VQ-A8P2-01 15 40318190 40318190 G A EIF2AK4 Missense_Mutation p.E1468K 0.40 deleterious(0) probably_damaging(0.937) TCGA-VQ-A8P2-01 15 40586467 40586467 C T PLCB2 Silent p.T687T 0.14 TCGA-VQ-A8P2-01 15 40661918 40661918 C T DISP2 Missense_Mutation p.P1202L 0.09 tolerated(0.28) benign(0.05) TCGA-VQ-A8P2-01 15 40707110 40707110 G A IVD Silent p.E272E 0.35 TCGA-VQ-A8P2-01 15 40895138 40895138 G T CASC5 Silent p.G3G 0.24 TCGA-VQ-A8P2-01 15 40915563 40915563 T C CASC5 Missense_Mutation p.M1060T 0.37 tolerated(0.13) benign(0.004) TCGA-VQ-A8P2-01 15 40915656 40915657 - A CASC5 Frame_Shift_Ins p.S1093Kfs*3 0.27 TCGA-VQ-A8P2-01 15 41059570 41059570 C T GCHFR 3'UTR 0.45 TCGA-VQ-A8P2-01 15 41105536 41105536 T C ZFYVE19 Missense_Mutation p.V344A 0.27 deleterious(0.04) probably_damaging(0.998) TCGA-VQ-A8P2-01 15 41148172 41148172 C T SPINT1 Silent p.C416C 0.08 TCGA-VQ-A8P2-01 15 41165533 41165533 G A RHOV Missense_Mutation p.A145V 0.41 tolerated(0.51) benign(0.294) TCGA-VQ-A8P2-01 15 41223735 41223735 C T DLL4 Silent p.I143I 0.35 TCGA-VQ-A8P2-01 15 41388078 41388078 C T INO80 Silent p.Q64Q 0.19 TCGA-VQ-A8P2-01 15 41555064 41555064 G A CHP1 Missense_Mutation p.R111Q 0.09 deleterious(0) possibly_damaging(0.496) TCGA-VQ-A8P2-01 15 41796560 41796560 G A LTK Missense_Mutation p.R776C 0.39 deleterious_low_confidence(0) possibly_damaging(0.812) TCGA-VQ-A8P2-01 15 41812945 41812945 G A RPAP1 Missense_Mutation p.L1147F 0.51 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 15 41813152 41813152 G A RPAP1 Nonsense_Mutation p.R1078* 0.38 TCGA-VQ-A8P2-01 15 41863316 41863316 G T TYRO3 Missense_Mutation p.A554S 0.31 tolerated(0.45) possibly_damaging(0.557) TCGA-VQ-A8P2-01 15 42040876 42040876 C A MGA Missense_Mutation p.P1752T 0.33 deleterious(0) possibly_damaging(0.611) TCGA-VQ-A8P2-01 15 42103380 42103380 A C MAPKBP1 Missense_Mutation p.T92P 0.10 deleterious(0) benign(0.241) TCGA-VQ-A8P2-01 15 42107546 42107546 G A MAPKBP1 Nonsense_Mutation p.W426* 0.36 TCGA-VQ-A8P2-01 15 42127219 42127219 C T JMJD7-PLA2G4B Silent p.Y90Y 0.46 TCGA-VQ-A8P2-01 15 42133436 42133436 C T PLA2G4B Missense_Mutation p.R365C 0.38 tolerated(0.37) benign(0.001) TCGA-VQ-A8P2-01 15 42154359 42154359 C T SPTBN5 Missense_Mutation p.R2506Q 0.40 benign(0.007) TCGA-VQ-A8P2-01 15 42182400 42182400 G A SPTBN5 Missense_Mutation p.P130S 0.56 benign(0.221) TCGA-VQ-A8P2-01 15 42276002 42276002 G A PLA2G4E Missense_Mutation p.R853W 0.33 deleterious(0) possibly_damaging(0.847) TCGA-VQ-A8P2-01 15 42373772 42373772 C T PLA2G4D Missense_Mutation p.A288T 0.37 tolerated(0.31) benign(0.012) TCGA-VQ-A8P2-01 15 42386671 42386671 G T PLA2G4D 5'UTR 0.33 TCGA-VQ-A8P2-01 15 42453890 42453892 TCT - VPS39 In_Frame_Del p.K847del 0.23 TCGA-VQ-A8P2-01 15 42525459 42525459 G A TMEM87A Silent p.A338A 0.49 TCGA-VQ-A8P2-01 15 42709484 42709484 C T ZNF106 3'UTR 0.29 TCGA-VQ-A8P2-01 15 42742997 42742997 A T ZNF106 Missense_Mutation p.D468E 0.45 tolerated(0.22) benign(0.002) TCGA-VQ-A8P2-01 15 42743231 42743231 C A ZNF106 Missense_Mutation p.Q390H 0.15 deleterious_low_confidence(0.03) benign(0.332) TCGA-VQ-A8P2-01 15 43351380 43351380 C T UBR1 Silent p.R332R 0.48 TCGA-VQ-A8P2-01 15 43502549 43502549 C T EPB42 Missense_Mutation p.R243H 0.36 tolerated(0.11) benign(0.019) TCGA-VQ-A8P2-01 15 43574186 43574186 C T TGM7 Missense_Mutation p.D403N 0.46 deleterious(0) probably_damaging(0.982) TCGA-VQ-A8P2-01 15 43692253 43692253 T - TUBGCP4 Frame_Shift_Del p.F478Lfs*5 0.34 TCGA-VQ-A8P2-01 15 43724702 43724702 C T TP53BP1 Missense_Mutation p.G1122E 0.46 tolerated(0.34) benign(0.025) TCGA-VQ-A8P2-01 15 43724750 43724750 G T TP53BP1 Missense_Mutation p.S1106Y 0.18 tolerated(0.05) possibly_damaging(0.459) TCGA-VQ-A8P2-01 15 43814569 43814569 G A MAP1A Missense_Mutation p.A300T 0.36 benign(0.015) TCGA-VQ-A8P2-01 15 43817767 43817767 G T MAP1A Missense_Mutation p.V1366F 0.45 benign(0.413) TCGA-VQ-A8P2-01 15 43817911 43817911 G T MAP1A Missense_Mutation p.D1414Y 0.56 probably_damaging(0.922) TCGA-VQ-A8P2-01 15 44630467 44630467 C T CASC4 Missense_Mutation p.P252S 0.49 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 15 44843099 44843099 A - EIF3J Frame_Shift_Del p.E61Rfs*5 0.48 TCGA-VQ-A8P2-01 15 44890969 44890969 C A SPG11 Missense_Mutation p.G1251V 0.09 tolerated(0.17) benign(0.213) TCGA-VQ-A8P2-01 15 45353327 45353327 C T SORD Nonsense_Mutation p.R110* 0.40 TCGA-VQ-A8P2-01 15 45398405 45398405 G A DUOX2 Missense_Mutation p.P689L 0.33 tolerated(0.11) benign(0.017) TCGA-VQ-A8P2-01 15 45399570 45399570 G A DUOX2 Nonsense_Mutation p.Q556* 0.37 TCGA-VQ-A8P2-01 15 45404770 45404770 C T DUOX2 Missense_Mutation p.V103I 0.13 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 15 45440629 45440629 G A DUOX1 Silent p.T934T 0.38 TCGA-VQ-A8P2-01 15 45561562 45561562 C T SLC28A2 Silent p.P465P 0.25 TCGA-VQ-A8P2-01 15 48057216 48057216 G A SEMA6D Missense_Mutation p.V464I 0.36 tolerated(0.23) benign(0.016) TCGA-VQ-A8P2-01 15 48063497 48063497 G A SEMA6D Missense_Mutation p.G913R 0.11 tolerated(0.13) benign(0.097) TCGA-VQ-A8P2-01 15 48434334 48434334 C T MYEF2 3'UTR 0.37 TCGA-VQ-A8P2-01 15 48500166 48500166 G A SLC12A1 Missense_Mutation p.A84T 0.37 tolerated(0.75) benign(0.001) TCGA-VQ-A8P2-01 15 48720624 48720624 G A FBN1 Missense_Mutation p.R2306C 0.39 probably_damaging(0.976) TCGA-VQ-A8P2-01 15 48736821 48736821 G A FBN1 Missense_Mutation p.A1985V 0.36 benign(0.243) TCGA-VQ-A8P2-01 15 49031106 49031106 C T CEP152 Silent p.P1491P 0.43 TCGA-VQ-A8P2-01 15 49031437 49031438 - T CEP152 Frame_Shift_Ins p.R1381Kfs*3 0.26 TCGA-VQ-A8P2-01 15 49118224 49118224 G T SHC4 Missense_Mutation p.L613I 0.33 deleterious(0) probably_damaging(0.987) TCGA-VQ-A8P2-01 15 49149927 49149927 C A SHC4 Missense_Mutation p.Q344H 0.13 deleterious(0) benign(0.385) TCGA-VQ-A8P2-01 15 49170441 49170441 C A EID1 Missense_Mutation p.P23H 0.30 deleterious(0.04) probably_damaging(0.912) TCGA-VQ-A8P2-01 15 49623985 49623985 G A FAM227B Missense_Mutation p.H471Y 0.12 tolerated(0.13) benign(0.021) TCGA-VQ-A8P2-01 15 50474705 50474705 C T SLC27A2 Silent p.F27F 0.38 TCGA-VQ-A8P2-01 15 50497454 50497454 G A SLC27A2 Missense_Mutation p.R289Q 0.32 deleterious(0) probably_damaging(0.99) TCGA-VQ-A8P2-01 15 50518218 50518218 G A SLC27A2 Missense_Mutation p.V401M 0.42 tolerated(0.12) probably_damaging(0.961) TCGA-VQ-A8P2-01 15 50578344 50578344 G A GABPB1 Missense_Mutation p.T319I 0.46 deleterious(0.02) benign(0.056) TCGA-VQ-A8P2-01 15 50867287 50867287 A G TRPM7 Missense_Mutation p.I1594T 0.43 tolerated(0.51) benign(0.023) TCGA-VQ-A8P2-01 15 50891387 50891387 A C TRPM7 Missense_Mutation p.L1032R 0.18 deleterious(0) probably_damaging(0.986) TCGA-VQ-A8P2-01 15 50935640 50935640 C A TRPM7 Missense_Mutation p.Q144H 0.16 deleterious(0.05) probably_damaging(0.995) TCGA-VQ-A8P2-01 15 51221271 51221271 T C AP4E1 Missense_Mutation p.V203A 0.24 deleterious(0.03) probably_damaging(0.992) TCGA-VQ-A8P2-01 15 51289828 51289828 A C AP4E1 Missense_Mutation p.E884D 0.38 tolerated_low_confidence(0.15) possibly_damaging(0.46) TCGA-VQ-A8P2-01 15 51750958 51750958 G A DMXL2 Missense_Mutation p.A2654V 0.40 tolerated(0.33) probably_damaging(0.999) TCGA-VQ-A8P2-01 15 51773156 51773156 C T DMXL2 Silent p.K2049K 0.38 TCGA-VQ-A8P2-01 15 51773334 51773334 T C DMXL2 Missense_Mutation p.E1990G 0.42 tolerated(0.05) benign(0.236) TCGA-VQ-A8P2-01 15 51792126 51792126 C A DMXL2 Nonsense_Mutation p.E1099* 0.51 TCGA-VQ-A8P2-01 15 52338884 52338884 A G MAPK6 Missense_Mutation p.N76S 0.20 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8P2-01 15 52418204 52418204 G A GNB5 Missense_Mutation p.A317V 0.36 tolerated(0.48) possibly_damaging(0.784) TCGA-VQ-A8P2-01 15 52497187 52497187 G A MYO5C Silent p.N1565N 0.41 TCGA-VQ-A8P2-01 15 52539207 52539207 C T MYO5C Missense_Mutation p.R629H 0.13 deleterious(0) probably_damaging(0.922) TCGA-VQ-A8P2-01 15 52605852 52605852 G A MYO5A 3'UTR 0.43 TCGA-VQ-A8P2-01 15 52664514 52664514 C T MYO5A Missense_Mutation p.G875D 0.38 deleterious(0) possibly_damaging(0.871) TCGA-VQ-A8P2-01 15 53081785 53081785 C T ONECUT1 Missense_Mutation p.M99I 0.15 tolerated(0.23) benign(0.101) TCGA-VQ-A8P2-01 15 53908070 53908071 - T WDR72 Frame_Shift_Ins p.M778Nfs*4 0.40 TCGA-VQ-A8P2-01 15 54803996 54803997 - A UNC13C Frame_Shift_Ins p.M1811Nfs*3 0.22 TCGA-VQ-A8P2-01 15 55838837 55838837 G A PYGO1 Missense_Mutation p.P215L 0.09 tolerated(0.16) benign(0.017) TCGA-VQ-A8P2-01 15 55931975 55931975 G A PRTG Missense_Mutation p.A730V 0.43 tolerated(0.16) benign(0.28) TCGA-VQ-A8P2-01 15 56032670 56032670 C A PRTG Nonsense_Mutation p.G103* 0.32 TCGA-VQ-A8P2-01 15 56122785 56122785 C A NEDD4 Splice_Site p.X1190_splice 0.37 TCGA-VQ-A8P2-01 15 56139191 56139191 G A NEDD4 Silent p.F875F 0.27 TCGA-VQ-A8P2-01 15 56386046 56386046 G A RFX7 Missense_Mutation p.P1294S 0.42 tolerated_low_confidence(0.45) benign(0.021) TCGA-VQ-A8P2-01 15 56723573 56723573 T C MNS1 Missense_Mutation p.K465E 0.44 deleterious(0) possibly_damaging(0.811) TCGA-VQ-A8P2-01 15 56748711 56748711 T C MNS1 Silent p.E78E 0.12 TCGA-VQ-A8P2-01 15 56923604 56923604 T C ZNF280D 3'UTR 0.39 TCGA-VQ-A8P2-01 15 56981557 56981557 G A ZNF280D Missense_Mutation p.A204V 0.14 tolerated(0.19) benign(0.016) TCGA-VQ-A8P2-01 15 57384051 57384051 G A TCF12 Missense_Mutation p.G96D 0.42 deleterious(0.01) possibly_damaging(0.687) TCGA-VQ-A8P2-01 15 57731173 57731173 G A CGNL1 Missense_Mutation p.V326I 0.50 tolerated(0.42) benign(0.427) TCGA-VQ-A8P2-01 15 57743728 57743728 C A CGNL1 Missense_Mutation p.L612I 0.07 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 15 57815764 57815764 G A CGNL1 Silent p.Q931Q 0.68 TCGA-VQ-A8P2-01 15 58467201 58467201 C T AQP9 Missense_Mutation p.P154L 0.29 deleterious(0.01) possibly_damaging(0.708) TCGA-VQ-A8P2-01 15 58840565 58840565 C T LIPC Missense_Mutation p.S282L 0.32 deleterious(0) probably_damaging(0.957) TCGA-VQ-A8P2-01 15 59323428 59323428 A C RNF111 Missense_Mutation p.D136A 0.45 deleterious_low_confidence(0) benign(0.304) TCGA-VQ-A8P2-01 15 59350608 59350608 G A RNF111 Missense_Mutation p.A409T 0.07 tolerated_low_confidence(0.32) benign(0.028) TCGA-VQ-A8P2-01 15 59359226 59359226 C T RNF111 Nonsense_Mutation p.Q544* 0.37 TCGA-VQ-A8P2-01 15 59373220 59373220 G A RNF111 Silent p.P678P 0.31 TCGA-VQ-A8P2-01 15 59387030 59387030 G A RNF111 Nonsense_Mutation p.W973* 0.36 TCGA-VQ-A8P2-01 15 59430540 59430540 G T MYO1E Missense_Mutation p.P1036H 0.39 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 15 59464128 59464128 G A MYO1E Silent p.I816I 0.08 TCGA-VQ-A8P2-01 15 59799540 59799540 A G FAM81A Missense_Mutation p.Q181R 0.59 deleterious(0.05) probably_damaging(0.939) TCGA-VQ-A8P2-01 15 60297942 60297942 C A FOXB1 Silent p.P260P 0.30 TCGA-VQ-A8P2-01 15 60656635 60656635 G A ANXA2 Missense_Mutation p.T97I 0.34 tolerated(0.08) benign(0.028) TCGA-VQ-A8P2-01 15 60747639 60747639 G A NARG2 Silent p.G223G 0.17 TCGA-VQ-A8P2-01 15 60760471 60760471 G A NARG2 Missense_Mutation p.P66L 0.10 deleterious(0.02) benign(0.039) TCGA-VQ-A8P2-01 15 60806916 60806916 G A RORA Missense_Mutation p.S141F 0.25 deleterious(0) probably_damaging(0.992) TCGA-VQ-A8P2-01 15 62182545 62182545 A T VPS13C Missense_Mutation p.F3054I 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A8P2-01 15 62990052 62990052 C T TLN2 Silent p.G486G 0.29 TCGA-VQ-A8P2-01 15 63069043 63069043 C T TLN2 Silent p.N1816N 0.48 TCGA-VQ-A8P2-01 15 63125683 63125683 C T TLN2 Intron 0.14 TCGA-VQ-A8P2-01 15 63336325 63336325 G T TPM1 Nonsense_Mutation p.E72* 0.21 TCGA-VQ-A8P2-01 15 63618464 63618464 G A CA12 3'UTR 0.37 TCGA-VQ-A8P2-01 15 63937789 63937789 C T HERC1 Silent p.S3657S 0.33 TCGA-VQ-A8P2-01 15 63961854 63961854 G A HERC1 Missense_Mutation p.R2697C 0.38 probably_damaging(0.997) TCGA-VQ-A8P2-01 15 63966685 63966685 G A HERC1 Nonsense_Mutation p.R2568* 0.35 TCGA-VQ-A8P2-01 15 64017518 64017518 C T HERC1 Missense_Mutation p.G1181S 0.42 benign(0.05) TCGA-VQ-A8P2-01 15 64275901 64275901 A G DAPK2 Missense_Mutation p.Y49H 0.30 deleterious(0) probably_damaging(0.982) TCGA-VQ-A8P2-01 15 64444916 64444916 G A SNX22 Missense_Mutation p.R80Q 0.35 deleterious(0) probably_damaging(0.974) TCGA-VQ-A8P2-01 15 64506164 64506165 - T CSNK1G1 Frame_Shift_Ins p.H202Tfs*5 0.32 TCGA-VQ-A8P2-01 15 64967782 64967782 C T ZNF609 Missense_Mutation p.A910V 0.39 tolerated(0.08) benign(0.006) TCGA-VQ-A8P2-01 15 65157157 65157157 G A PLEKHO2 Silent p.G181G 0.08 TCGA-VQ-A8P2-01 15 65242092 65242092 G A ANKDD1A Missense_Mutation p.R461Q 0.43 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 15 65295424 65295424 A G MTFMT Silent p.V382V 0.18 TCGA-VQ-A8P2-01 15 65410998 65410998 G A PDCD7 3'UTR 0.38 TCGA-VQ-A8P2-01 15 65448095 65448095 G A CLPX Silent p.L416L 0.43 TCGA-VQ-A8P2-01 15 65680882 65680882 G A IGDCC4 Missense_Mutation p.T917I 0.30 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8P2-01 15 65759487 65759487 G A DPP8 Silent p.Y553Y 0.39 TCGA-VQ-A8P2-01 15 66249936 66249936 G A MEGF11 Silent p.G412G 0.42 TCGA-VQ-A8P2-01 15 66643869 66643869 A G TIPIN Silent p.G94G 0.34 TCGA-VQ-A8P2-01 15 66791951 66791951 C T RPL4 Missense_Mutation p.A360T 0.49 tolerated(0.14) benign(0.002) TCGA-VQ-A8P2-01 15 66792500 66792500 C T RPL4 Missense_Mutation p.R311H 0.31 tolerated(0.08) benign(0.124) TCGA-VQ-A8P2-01 15 66795167 66795167 C T RPL4 Intron 0.46 TCGA-VQ-A8P2-01 15 68118415 68118415 C T SKOR1 Silent p.Y269Y 0.50 TCGA-VQ-A8P2-01 15 68119564 68119564 C T SKOR1 Intron 0.52 TCGA-VQ-A8P2-01 15 68491894 68491894 G A CALML4 Nonsense_Mutation p.Q97* 0.37 TCGA-VQ-A8P2-01 15 68500615 68500615 C T CLN6 Missense_Mutation p.A267T 0.42 tolerated(0.36) benign(0.001) TCGA-VQ-A8P2-01 15 68582226 68582226 G A FEM1B Missense_Mutation p.R177H 0.48 tolerated(0.07) benign(0.001) TCGA-VQ-A8P2-01 15 70343770 70343770 A T TLE3 Missense_Mutation p.L724H 0.45 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8P2-01 15 71184332 71184332 C T THAP10 Missense_Mutation p.A94T 0.32 tolerated(0.45) benign(0.006) TCGA-VQ-A8P2-01 15 72313347 72313347 A G MYO9A Missense_Mutation p.V337A 0.36 deleterious(0) possibly_damaging(0.626) TCGA-VQ-A8P2-01 15 72511394 72511394 G A PKM Silent p.T15T 0.46 TCGA-VQ-A8P2-01 15 73048787 73048787 C A ADPGK Silent p.G215G 0.35 TCGA-VQ-A8P2-01 15 73590887 73590887 T C NEO1 Missense_Mutation p.I1367T 0.18 tolerated(0.11) benign(0.278) TCGA-VQ-A8P2-01 15 73615916 73615916 C T HCN4 Missense_Mutation p.A840T 0.34 deleterious_low_confidence(0.02) unknown(0) TCGA-VQ-A8P2-01 15 73617719 73617719 C T HCN4 Missense_Mutation p.D553N 0.37 deleterious(0.03) unknown(0) TCGA-VQ-A8P2-01 15 73766202 73766202 T G C15orf60 Nonsense_Mutation p.Y63* 0.25 TCGA-VQ-A8P2-01 15 73925526 73925526 C T NPTN Missense_Mutation p.A11T 0.21 tolerated(0.42) unknown(0) TCGA-VQ-A8P2-01 15 74281565 74281565 G A STOML1 Missense_Mutation p.R92C 0.60 deleterious(0.02) benign(0.445) TCGA-VQ-A8P2-01 15 74426538 74426538 G A ISLR2 Silent p.P481P 0.44 TCGA-VQ-A8P2-01 15 74483818 74483818 G A STRA6 Silent p.S284S 0.49 TCGA-VQ-A8P2-01 15 74911640 74911640 C T CLK3 Nonsense_Mutation p.R183* 0.37 TCGA-VQ-A8P2-01 15 75012879 75012879 G T CYP1A1 Missense_Mutation p.T497N 0.45 deleterious(0) probably_damaging(0.951) TCGA-VQ-A8P2-01 15 75133834 75133834 G T ULK3 Missense_Mutation p.F127L 0.39 deleterious(0.01) possibly_damaging(0.843) TCGA-VQ-A8P2-01 15 75305064 75305064 G T SCAMP5 Missense_Mutation p.K18N 0.08 deleterious(0) probably_damaging(0.937) TCGA-VQ-A8P2-01 15 75311330 75311330 C T SCAMP5 3'UTR 0.27 TCGA-VQ-A8P2-01 15 75586166 75586166 G A GOLGA6D Missense_Mutation p.G564S 0.20 tolerated(0.28) benign(0.139) TCGA-VQ-A8P2-01 15 75650895 75650895 C T MAN2C1 Missense_Mutation p.A788T 0.09 tolerated(0.12) benign(0.015) TCGA-VQ-A8P2-01 15 75651994 75651994 C T MAN2C1 Missense_Mutation p.A639T 0.42 tolerated(0.28) benign(0.005) TCGA-VQ-A8P2-01 15 75688801 75688801 G A SIN3A Missense_Mutation p.R631W 0.37 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 15 75902242 75902242 C T SNUPN Missense_Mutation p.V133M 0.40 deleterious(0.04) possibly_damaging(0.561) TCGA-VQ-A8P2-01 15 75949588 75949588 G A SNX33 3'UTR 0.36 TCGA-VQ-A8P2-01 15 75975055 75975055 C T CSPG4 Missense_Mutation p.R1559H 0.41 tolerated(0.08) benign(0) TCGA-VQ-A8P2-01 15 75981785 75981785 G T CSPG4 Missense_Mutation p.L541I 0.37 tolerated(0.85) benign(0.005) TCGA-VQ-A8P2-01 15 75982161 75982161 G A CSPG4 Silent p.C415C 0.23 TCGA-VQ-A8P2-01 15 75982460 75982460 G T CSPG4 Missense_Mutation p.L316M 0.12 deleterious(0.05) probably_damaging(0.967) TCGA-VQ-A8P2-01 15 76017504 76017504 C T ODF3L1 Silent p.D58D 0.23 TCGA-VQ-A8P2-01 15 76301584 76301584 C A NRG4 Missense_Mutation p.G21W 0.56 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 15 76496777 76496777 C A C15orf27 3'UTR 0.30 TCGA-VQ-A8P2-01 15 76578072 76578072 A G ETFA Silent p.S190S 0.35 TCGA-VQ-A8P2-01 15 76584838 76584838 C T ETFA Silent p.L95L 0.08 TCGA-VQ-A8P2-01 15 77320952 77320952 G A PSTPIP1 Missense_Mutation p.E159K 0.30 tolerated(0.06) benign(0.086) TCGA-VQ-A8P2-01 15 77472944 77472944 T A PEAK1 Missense_Mutation p.D442V 0.14 deleterious(0) possibly_damaging(0.779) TCGA-VQ-A8P2-01 15 78393279 78393279 C A SH2D7 Silent p.S228S 0.10 TCGA-VQ-A8P2-01 15 78486340 78486340 C T ACSBG1 Missense_Mutation p.S159N 0.35 deleterious(0) probably_damaging(0.912) TCGA-VQ-A8P2-01 15 78764094 78764094 A G IREB2 Silent p.R237R 0.17 TCGA-VQ-A8P2-01 15 79059359 79059359 C T ADAMTS7 Missense_Mutation p.R965Q 0.47 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8P2-01 15 79088947 79088947 C T ADAMTS7 Silent p.L268L 0.40 TCGA-VQ-A8P2-01 15 79178537 79178537 G A MORF4L1 Silent p.L109L 0.08 TCGA-VQ-A8P2-01 15 79254472 79254472 G T RASGRF1 3'UTR 0.38 TCGA-VQ-A8P2-01 15 79750190 79750190 T C KIAA1024 Silent p.I567I 0.11 TCGA-VQ-A8P2-01 15 79750586 79750586 A - KIAA1024 Frame_Shift_Del p.S702Afs*11 0.33 TCGA-VQ-A8P2-01 15 80806668 80806668 C A ARNT2 Missense_Mutation p.L267I 0.18 deleterious(0.04) benign(0.364) TCGA-VQ-A8P2-01 15 81187376 81187376 A - KIAA1199 Frame_Shift_Del p.G380Afs*28 0.33 TCGA-VQ-A8P2-01 15 81578108 81578108 G A IL16 Silent p.T423T 0.19 TCGA-VQ-A8P2-01 15 81585003 81585003 C A IL16 Silent p.R509R 0.37 TCGA-VQ-A8P2-01 15 81592332 81592332 C T IL16 Nonsense_Mutation p.R889* 0.43 TCGA-VQ-A8P2-01 15 81650803 81650803 C A TMC3 Missense_Mutation p.K180N 0.20 deleterious(0) possibly_damaging(0.742) TCGA-VQ-A8P2-01 15 81664989 81664989 A C TMC3 Missense_Mutation p.L60R 0.40 deleterious(0) possibly_damaging(0.845) TCGA-VQ-A8P2-01 15 82335696 82335696 G T MEX3B Silent p.S505S 0.61 TCGA-VQ-A8P2-01 15 82336141 82336141 G T MEX3B Missense_Mutation p.P357H 0.34 tolerated(0.12) unknown(0) TCGA-VQ-A8P2-01 15 82336840 82336840 C T MEX3B Missense_Mutation p.R124Q 0.32 deleterious(0.01) possibly_damaging(0.864) TCGA-VQ-A8P2-01 15 83433916 83433916 A G FSD2 Splice_Site p.X607_splice 0.28 TCGA-VQ-A8P2-01 15 83776431 83776431 C T TM6SF1 5'UTR 0.50 TCGA-VQ-A8P2-01 15 83932336 83932336 T G BNC1 Missense_Mutation p.E556A 0.39 deleterious(0.01) benign(0.156) TCGA-VQ-A8P2-01 15 83933555 83933555 T G BNC1 Missense_Mutation p.K150Q 0.18 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 15 84245426 84245426 C T SH3GL3 Missense_Mutation p.A186V 0.36 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 15 84255837 84255837 C T SH3GL3 Nonsense_Mutation p.R243* 0.19 TCGA-VQ-A8P2-01 15 84705607 84705607 T C ADAMTSL3 Missense_Mutation p.C1613R 0.31 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 15 85400477 85400477 C T ALPK3 Silent p.F1038F 0.15 TCGA-VQ-A8P2-01 15 85452004 85452004 T C SLC28A1 Missense_Mutation p.V258A 0.47 tolerated(0.11) benign(0.329) TCGA-VQ-A8P2-01 15 85643259 85643259 T C PDE8A Missense_Mutation p.Y319H 0.41 tolerated(0.16) possibly_damaging(0.461) TCGA-VQ-A8P2-01 15 85664056 85664056 C A PDE8A Missense_Mutation p.A588D 0.16 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 15 86124154 86124154 G T AKAP13 Missense_Mutation p.R952I 0.10 deleterious_low_confidence(0) benign(0.107) TCGA-VQ-A8P2-01 15 86124911 86124911 T C AKAP13 Silent p.H1204H 0.41 TCGA-VQ-A8P2-01 15 86270413 86270413 C T AKAP13 Silent p.V2317V 0.38 TCGA-VQ-A8P2-01 15 86940677 86940677 G A AGBL1 Missense_Mutation p.E773K 0.49 deleterious(0.04) probably_damaging(0.999) TCGA-VQ-A8P2-01 15 88669572 88669572 G T NTRK3 Silent p.A442A 0.28 TCGA-VQ-A8P2-01 15 88680655 88680655 C T NTRK3 Missense_Mutation p.R201H 0.46 tolerated(0.31) benign(0.238) TCGA-VQ-A8P2-01 15 89074655 89074655 C A DET1 Missense_Mutation p.E105D 0.37 tolerated(0.64) benign(0.071) TCGA-VQ-A8P2-01 15 89195504 89195504 G A ISG20 Missense_Mutation p.R131Q 0.34 deleterious(0) benign(0.164) TCGA-VQ-A8P2-01 15 89719117 89719117 G T ABHD2 Missense_Mutation p.G205C 0.26 deleterious(0.03) probably_damaging(0.941) TCGA-VQ-A8P2-01 15 89806663 89806663 T A FANCI Missense_Mutation p.Y173N 0.31 tolerated(0.31) benign(0.002) TCGA-VQ-A8P2-01 15 89867081 89867081 A G POLG Silent p.L708L 0.36 TCGA-VQ-A8P2-01 15 90168893 90168893 C T TICRR Silent p.D1784D 0.11 TCGA-VQ-A8P2-01 15 90344682 90344682 G A ANPEP Missense_Mutation p.R576C 0.30 deleterious(0) possibly_damaging(0.856) TCGA-VQ-A8P2-01 15 90348615 90348615 C T ANPEP Missense_Mutation p.E232K 0.19 tolerated(0.29) benign(0.001) TCGA-VQ-A8P2-01 15 90611200 90611200 C T ZNF710 Silent p.N277N 0.39 TCGA-VQ-A8P2-01 15 91428699 91428699 G A FES Missense_Mutation p.A91T 0.30 deleterious(0.01) probably_damaging(0.941) TCGA-VQ-A8P2-01 15 91454614 91454614 G T MAN2A2 Splice_Site p.X648_splice 0.34 TCGA-VQ-A8P2-01 15 91455452 91455452 C T MAN2A2 Silent p.F763F 0.10 TCGA-VQ-A8P2-01 15 91455839 91455839 G A MAN2A2 Missense_Mutation p.R805H 0.13 deleterious(0.03) probably_damaging(0.993) TCGA-VQ-A8P2-01 15 91478773 91478773 G T UNC45A Splice_Site p.X18_splice 0.39 TCGA-VQ-A8P2-01 15 91827281 91827281 G A SV2B Missense_Mutation p.R513Q 0.09 tolerated(0.09) benign(0.025) TCGA-VQ-A8P2-01 15 92397293 92397293 C T SLCO3A1 Missense_Mutation p.A52V 0.25 tolerated(1) possibly_damaging(0.666) TCGA-VQ-A8P2-01 15 92706100 92706100 G A SLCO3A1 Missense_Mutation p.R623Q 0.36 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 15 92706441 92706441 A - SLCO3A1 3'UTR 0.52 TCGA-VQ-A8P2-01 15 94841702 94841702 G A MCTP2 Missense_Mutation p.G70R 0.43 tolerated(0.32) benign(0.003) TCGA-VQ-A8P2-01 15 99251184 99251184 C T IGF1R Missense_Mutation p.A163V 0.44 deleterious(0.04) benign(0.05) TCGA-VQ-A8P2-01 15 99460047 99460047 G A IGF1R Missense_Mutation p.E715K 0.33 deleterious(0.02) possibly_damaging(0.83) TCGA-VQ-A8P2-01 15 99486165 99486165 G A IGF1R Silent p.T1157T 0.44 TCGA-VQ-A8P2-01 15 99486273 99486273 G A IGF1R Silent p.S1193S 0.29 TCGA-VQ-A8P2-01 15 99901565 99901565 C T LRRC28 Silent p.S240S 0.75 TCGA-VQ-A8P2-01 16 10525234 10525234 G A ATF7IP2 Missense_Mutation p.E253K 0.35 deleterious(0.01) possibly_damaging(0.695) TCGA-VQ-A8P2-01 16 10527497 10527497 C A ATF7IP2 Missense_Mutation p.F317L 0.35 tolerated(1) benign(0.001) TCGA-VQ-A8P2-01 16 10626734 10626734 G A EMP2 3'UTR 0.30 TCGA-VQ-A8P2-01 16 10861830 10861831 - T NUBP1 Frame_Shift_Ins p.I285Hfs*2 0.11 TCGA-VQ-A8P2-01 16 10997738 10997738 G A CIITA Missense_Mutation p.R308Q 0.31 tolerated(0.2) benign(0.148) TCGA-VQ-A8P2-01 16 111450 111450 C T RHBDF1 Missense_Mutation p.R443Q 0.27 tolerated(0.09) possibly_damaging(0.667) TCGA-VQ-A8P2-01 16 11217749 11217749 C T CLEC16A Missense_Mutation p.R807C 0.24 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 16 11220012 11220013 - C CLEC16A Intron 0.35 TCGA-VQ-A8P2-01 16 11260252 11260252 C T CLEC16A Silent p.A883A 0.42 TCGA-VQ-A8P2-01 16 11773183 11773183 C T TXNDC11 Silent p.A915A 0.19 TCGA-VQ-A8P2-01 16 11845192 11845192 A - ZC3H7A Frame_Shift_Del p.L966Cfs*5 0.19 TCGA-VQ-A8P2-01 16 11846593 11846593 G A ZC3H7A Silent p.F886F 0.36 TCGA-VQ-A8P2-01 16 11846689 11846689 C A ZC3H7A Splice_Site p.X855_splice 0.16 TCGA-VQ-A8P2-01 16 11857356 11857356 G A ZC3H7A Silent p.V660V 0.46 TCGA-VQ-A8P2-01 16 11941644 11941644 G A RSL1D1 Nonsense_Mutation p.R89* 0.45 TCGA-VQ-A8P2-01 16 1260486 1260486 G A CACNA1H Missense_Mutation p.G1321D 0.44 tolerated(0.29) benign(0.33) TCGA-VQ-A8P2-01 16 1272218 1272218 C T TPSG1 Missense_Mutation p.R212Q 0.57 tolerated(0.71) benign(0.001) TCGA-VQ-A8P2-01 16 139752 139752 C T NPRL3 Missense_Mutation p.R437H 0.28 tolerated(0.09) benign(0.381) TCGA-VQ-A8P2-01 16 1399497 1399497 C T TSR3 Missense_Mutation p.A294T 0.38 tolerated_low_confidence(0.22) benign(0.017) TCGA-VQ-A8P2-01 16 14029218 14029218 C T ERCC4 Missense_Mutation p.R477W 0.10 deleterious(0.01) benign(0) TCGA-VQ-A8P2-01 16 14307436 14307436 G A MKL2 Missense_Mutation p.R104Q 0.33 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 16 14312822 14312822 G A MKL2 Silent p.S220S 0.39 TCGA-VQ-A8P2-01 16 14749041 14749041 C - BFAR Frame_Shift_Del p.Q255Rfs*9 0.33 TCGA-VQ-A8P2-01 16 14766501 14766501 T C PLA2G10 Missense_Mutation p.Q154R 0.42 tolerated(0.39) benign(0.004) TCGA-VQ-A8P2-01 16 15111230 15111230 T C PDXDC1 Missense_Mutation p.L305S 0.12 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 16 1544534 1544534 G T TELO2 Missense_Mutation p.E84D 0.38 deleterious(0.04) benign(0.155) TCGA-VQ-A8P2-01 16 15457735 15457735 C T NPIPA5 Silent p.A278A 0.12 TCGA-VQ-A8P2-01 16 15494646 15494646 A G MPV17L Missense_Mutation p.M105V 0.40 tolerated(0.43) benign(0.055) TCGA-VQ-A8P2-01 16 1551751 1551751 G A TELO2 Silent p.A483A 0.44 TCGA-VQ-A8P2-01 16 1551760 1551760 C T TELO2 Silent p.D486D 0.41 TCGA-VQ-A8P2-01 16 1556293 1556293 G A TELO2 Missense_Mutation p.G697S 0.32 deleterious(0) probably_damaging(0.98) TCGA-VQ-A8P2-01 16 15829328 15829328 C A MYH11 Missense_Mutation p.R1141M 0.12 possibly_damaging(0.653) TCGA-VQ-A8P2-01 16 15835703 15835703 C T MYH11 Missense_Mutation p.A863T 0.45 benign(0.029) TCGA-VQ-A8P2-01 16 1604919 1604919 C T TMEM204 Silent p.L191L 0.21 TCGA-VQ-A8P2-01 16 16244062 16244062 G A ABCC6 Silent p.S1480S 0.24 TCGA-VQ-A8P2-01 16 16291930 16291930 C A ABCC6 Missense_Mutation p.G429V 0.25 tolerated(0.34) benign(0.026) TCGA-VQ-A8P2-01 16 17202699 17202699 G A XYLT1 Silent p.G911G 0.55 TCGA-VQ-A8P2-01 16 17292087 17292087 G A XYLT1 Missense_Mutation p.A424V 0.32 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 16 17292122 17292122 G A XYLT1 Silent p.T412T 0.52 TCGA-VQ-A8P2-01 16 17353110 17353110 C T XYLT1 Silent p.V216V 0.36 TCGA-VQ-A8P2-01 16 1818223 1818223 G A MAPK8IP3 Missense_Mutation p.G1195R 0.29 deleterious(0) benign(0.117) TCGA-VQ-A8P2-01 16 1818372 1818372 G A MAPK8IP3 Silent p.S1244S 0.55 TCGA-VQ-A8P2-01 16 1825585 1825585 C T EME2 Nonsense_Mutation p.Q227* 0.40 TCGA-VQ-A8P2-01 16 1831373 1831373 C T SPSB3 Missense_Mutation p.D38N 0.49 tolerated_low_confidence(0.08) benign(0.081) TCGA-VQ-A8P2-01 16 1837741 1837741 C T NUBP2 Missense_Mutation p.T133M 0.43 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 16 18603936 18603936 C T ABCC6P1 RNA 0.50 TCGA-VQ-A8P2-01 16 1872355 1872355 G A HAGH Missense_Mutation p.A87V 0.40 tolerated(0.42) benign(0.034) TCGA-VQ-A8P2-01 16 18881989 18881989 C T SMG1 Missense_Mutation p.R812H 0.35 tolerated(0.06) probably_damaging(0.976) TCGA-VQ-A8P2-01 16 19468240 19468240 G A TMC5 Intron 0.45 TCGA-VQ-A8P2-01 16 19539342 19539342 C T CCP110 Silent p.L47L 0.13 TCGA-VQ-A8P2-01 16 19628005 19628005 T C C16orf62 Intron 0.28 TCGA-VQ-A8P2-01 16 19710848 19710848 G A C16orf62 Missense_Mutation p.G980S 0.43 tolerated(0.28) benign(0.007) TCGA-VQ-A8P2-01 16 19883579 19883579 G A GPRC5B Missense_Mutation p.P197S 0.39 tolerated(0.12) probably_damaging(1) TCGA-VQ-A8P2-01 16 19884095 19884095 A G GPRC5B Missense_Mutation p.S25P 0.58 tolerated(0.24) possibly_damaging(0.475) TCGA-VQ-A8P2-01 16 2012341 2012341 C T RPS2 Intron 0.30 TCGA-VQ-A8P2-01 16 20329677 20329677 C T GP2 Silent p.T364T 0.39 TCGA-VQ-A8P2-01 16 20330974 20330974 G A GP2 Silent p.V328V 0.10 TCGA-VQ-A8P2-01 16 20335417 20335417 C T GP2 Missense_Mutation p.D86N 0.40 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 16 20396001 20396001 A - PDILT Frame_Shift_Del p.F125Lfs*20 0.32 TCGA-VQ-A8P2-01 16 20448482 20448482 G A ACSM5 Missense_Mutation p.D473N 0.36 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 16 20448622 20448622 C T ACSM5 Missense_Mutation p.A490V 0.39 deleterious(0.02) benign(0.316) TCGA-VQ-A8P2-01 16 2049534 2049534 G A ZNF598 Silent p.L672L 0.52 TCGA-VQ-A8P2-01 16 2052681 2052681 C T ZNF598 Missense_Mutation p.R173H 0.50 probably_damaging(1) TCGA-VQ-A8P2-01 16 20548443 20548443 C T ACSM2B 3'UTR 0.33 TCGA-VQ-A8P2-01 16 20681260 20681260 C T ACSM1 Silent p.S267S 0.37 TCGA-VQ-A8P2-01 16 20681287 20681287 C A ACSM1 Missense_Mutation p.K258N 0.25 tolerated(0.11) possibly_damaging(0.732) TCGA-VQ-A8P2-01 16 20999312 20999312 G A DNAH3 Missense_Mutation p.S2226L 0.41 deleterious(0.04) possibly_damaging(0.612) TCGA-VQ-A8P2-01 16 21328375 21328375 G A CRYM-AS1 RNA 0.09 TCGA-VQ-A8P2-01 16 2152892 2152892 G T PKD1 Nonsense_Mutation p.C2957* 0.42 TCGA-VQ-A8P2-01 16 21969872 21969872 C T UQCRC2 Missense_Mutation p.S95L 0.36 deleterious(0) probably_damaging(0.944) TCGA-VQ-A8P2-01 16 21982926 21982926 G A UQCRC2 Missense_Mutation p.A251T 0.28 tolerated(0.35) benign(0.008) TCGA-VQ-A8P2-01 16 22142599 22142599 C T VWA3A Missense_Mutation p.R576W 0.43 deleterious(0.01) benign(0.117) TCGA-VQ-A8P2-01 16 22163857 22163857 C A VWA3A Missense_Mutation p.L1103M 0.33 deleterious(0.02) probably_damaging(0.973) TCGA-VQ-A8P2-01 16 22339834 22339834 C - POLR3E Frame_Shift_Del p.Q626Rfs*20 0.21 TCGA-VQ-A8P2-01 16 2282831 2282831 T C E4F1 Missense_Mutation p.S269P 0.58 deleterious(0.01) probably_damaging(0.998) TCGA-VQ-A8P2-01 16 2284265 2284265 G A E4F1 Missense_Mutation p.R490H 0.54 deleterious(0.01) probably_damaging(0.998) TCGA-VQ-A8P2-01 16 2285496 2285496 G A E4F1 Missense_Mutation p.E760K 0.38 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 16 22926460 22926460 C A HS3ST2 Silent p.T227T 0.45 TCGA-VQ-A8P2-01 16 22926621 22926621 C T HS3ST2 Missense_Mutation p.P281L 0.36 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 16 23085085 23085085 G A USP31 Missense_Mutation p.R765W 0.21 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 16 2314208 2314208 G A RNPS1 Missense_Mutation p.R66C 0.39 tolerated_low_confidence(0.06) unknown(0) TCGA-VQ-A8P2-01 16 23208603 23208603 A G SCNN1G Missense_Mutation p.Y311C 0.44 deleterious(0.04) probably_damaging(0.954) TCGA-VQ-A8P2-01 16 2326762 2326762 G A ABCA3 Silent p.D1676D 0.38 TCGA-VQ-A8P2-01 16 2326784 2326784 G A ABCA3 Missense_Mutation p.A1669V 0.42 tolerated(0.08) benign(0.139) TCGA-VQ-A8P2-01 16 23360160 23360160 C T SCNN1B Silent p.S80S 0.42 TCGA-VQ-A8P2-01 16 23678491 23678491 G A DCTN5 3'UTR 0.43 TCGA-VQ-A8P2-01 16 23692260 23692260 C T PLK1 Silent p.V201V 0.44 TCGA-VQ-A8P2-01 16 23698843 23698843 C T PLK1 Nonsense_Mutation p.R364* 0.46 TCGA-VQ-A8P2-01 16 23700569 23700569 C T PLK1 Silent p.L427L 0.27 TCGA-VQ-A8P2-01 16 2376255 2376255 C T ABCA3 Silent p.T25T 0.33 TCGA-VQ-A8P2-01 16 24578657 24578657 G A RBBP6 Missense_Mutation p.A595T 0.40 tolerated_low_confidence(0.09) possibly_damaging(0.499) TCGA-VQ-A8P2-01 16 24578827 24578827 G T RBBP6 Splice_Site p.X651_splice 0.39 TCGA-VQ-A8P2-01 16 24582301 24582301 C T RBBP6 Missense_Mutation p.A1305V 0.36 tolerated_low_confidence(0.06) unknown(0) TCGA-VQ-A8P2-01 16 24582882 24582882 G A RBBP6 Missense_Mutation p.D1499N 0.25 deleterious_low_confidence(0) unknown(0) TCGA-VQ-A8P2-01 16 24815625 24815625 T C TNRC6A Silent p.N1274N 0.42 TCGA-VQ-A8P2-01 16 2487243 2487243 C T CCNF Missense_Mutation p.R154C 0.42 deleterious(0.02) probably_damaging(0.943) TCGA-VQ-A8P2-01 16 24902348 24902348 C A SLC5A11 Missense_Mutation p.L275I 0.40 tolerated(1) benign(0.047) TCGA-VQ-A8P2-01 16 24942275 24942275 C - ARHGAP17 Frame_Shift_Del p.G782Vfs*55 0.19 TCGA-VQ-A8P2-01 16 25255489 25255489 G T ZKSCAN2 Missense_Mutation p.A533D 0.37 deleterious(0) probably_damaging(0.966) TCGA-VQ-A8P2-01 16 2578332 2578332 G A AMDHD2 Silent p.T271T 0.41 TCGA-VQ-A8P2-01 16 2580281 2580281 G A AMDHD2 Missense_Mutation p.D436N 0.17 deleterious(0.02) benign(0.005) TCGA-VQ-A8P2-01 16 2580433 2580433 C T CEMP1 Silent p.P214P 0.60 TCGA-VQ-A8P2-01 16 27078437 27078437 C T C16orf82 RNA 0.42 TCGA-VQ-A8P2-01 16 27078440 27078440 G A C16orf82 RNA 0.36 TCGA-VQ-A8P2-01 16 2732702 2732702 C T KCTD5 Silent p.G51G 0.20 TCGA-VQ-A8P2-01 16 27497442 27497442 C T GTF3C1 Missense_Mutation p.R1245H 0.39 deleterious(0.02) probably_damaging(0.991) TCGA-VQ-A8P2-01 16 27544696 27544696 G A GTF3C1 Silent p.Y255Y 0.59 TCGA-VQ-A8P2-01 16 27751738 27751738 C T KIAA0556 Missense_Mutation p.S707L 0.35 tolerated(0.24) benign(0.008) TCGA-VQ-A8P2-01 16 2812423 2812423 C T SRRM2 Nonsense_Mutation p.R632* 0.48 TCGA-VQ-A8P2-01 16 28133084 28133084 C A XPO6 Splice_Site p.X589_splice 0.51 TCGA-VQ-A8P2-01 16 28507295 28507295 G A APOBR Silent p.E311E 0.44 TCGA-VQ-A8P2-01 16 28602230 28602230 G A CCDC101 Missense_Mutation p.A247T 0.39 deleterious(0) probably_damaging(0.984) TCGA-VQ-A8P2-01 16 28856666 28856666 G A TUFM Missense_Mutation p.T128I 0.22 tolerated(0.25) benign(0.13) TCGA-VQ-A8P2-01 16 28899023 28899023 C T ATP2A1 Missense_Mutation p.A303V 0.37 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 16 2903116 2903116 G T PRSS22 Missense_Mutation p.S311Y 0.44 tolerated(0.06) benign(0.005) TCGA-VQ-A8P2-01 16 2905698 2905698 G A PRSS22 Missense_Mutation p.R146C 0.38 deleterious(0) probably_damaging(0.959) TCGA-VQ-A8P2-01 16 29096539 29096539 C T RRN3P2 Intron 0.17 TCGA-VQ-A8P2-01 16 29824855 29824855 C - PRRT2 Frame_Shift_Del p.P161Lfs*15 0.33 TCGA-VQ-A8P2-01 16 29845351 29845351 G T MVP Nonsense_Mutation p.E181* 0.28 TCGA-VQ-A8P2-01 16 29883788 29883788 G T SEZ6L2 Missense_Mutation p.L850M 0.33 deleterious(0.02) possibly_damaging(0.809) TCGA-VQ-A8P2-01 16 29907140 29907140 C T SEZ6L2 Missense_Mutation p.E185K 0.32 deleterious(0.02) possibly_damaging(0.867) TCGA-VQ-A8P2-01 16 29918267 29918267 G A KCTD13 Missense_Mutation p.R306C 0.29 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 16 29999020 29999020 C A TAOK2 Missense_Mutation p.P1143T 0.09 deleterious_low_confidence(0.02) probably_damaging(0.991) TCGA-VQ-A8P2-01 16 30018527 30018527 C A DOC2A Missense_Mutation p.K207N 0.09 deleterious(0) possibly_damaging(0.583) TCGA-VQ-A8P2-01 16 30037121 30037121 C T FAM57B Missense_Mutation p.D156N 0.33 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8P2-01 16 3021667 3021667 G A PAQR4 Silent p.Q180Q 0.29 TCGA-VQ-A8P2-01 16 30387176 30387176 C T MYLPF Silent p.G13G 0.24 TCGA-VQ-A8P2-01 16 30408834 30408834 C A ZNF48 Missense_Mutation p.P88H 0.35 tolerated(0.55) benign(0.002) TCGA-VQ-A8P2-01 16 30409310 30409310 C - ZNF48 Frame_Shift_Del p.R249Dfs*43 0.38 TCGA-VQ-A8P2-01 16 30536332 30536332 C T ZNF768 Missense_Mutation p.E377K 0.40 deleterious_low_confidence(0.04) possibly_damaging(0.695) TCGA-VQ-A8P2-01 16 3071633 3071633 G A TNFRSF12A Missense_Mutation p.G93R 0.35 deleterious(0.03) probably_damaging(0.917) TCGA-VQ-A8P2-01 16 30724107 30724107 G T SRCAP Missense_Mutation p.A701S 0.18 unknown(0) TCGA-VQ-A8P2-01 16 30735996 30735996 G T SRCAP Missense_Mutation p.A1751S 0.42 benign(0.259) TCGA-VQ-A8P2-01 16 30749667 30749667 A G SRCAP Missense_Mutation p.Q2769R 0.42 unknown(0) TCGA-VQ-A8P2-01 16 30794711 30794711 G A ZNF629 Missense_Mutation p.A313V 0.53 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A8P2-01 16 30976048 30976048 G A SETD1A Missense_Mutation p.A329T 0.09 benign(0.037) TCGA-VQ-A8P2-01 16 30976104 30976104 C A SETD1A Silent p.S347S 0.15 TCGA-VQ-A8P2-01 16 30992462 30992462 C T SETD1A Silent p.D1591D 0.37 TCGA-VQ-A8P2-01 16 30997761 30997761 G A HSD3B7 Missense_Mutation p.E114K 0.41 tolerated(0.35) benign(0.009) TCGA-VQ-A8P2-01 16 31075674 31075674 C A ZNF668 Missense_Mutation p.R59M 0.19 tolerated(0.09) probably_damaging(0.927) TCGA-VQ-A8P2-01 16 31090727 31090727 G A ZNF646 Missense_Mutation p.A1028T 0.13 tolerated(0.13) benign(0.027) TCGA-VQ-A8P2-01 16 31091378 31091378 C A ZNF646 Missense_Mutation p.L1245I 0.24 deleterious(0.01) probably_damaging(0.986) TCGA-VQ-A8P2-01 16 31092623 31092623 A G ZNF646 Missense_Mutation p.R1660G 0.13 tolerated(0.39) benign(0) TCGA-VQ-A8P2-01 16 31092711 31092711 C T ZNF646 Missense_Mutation p.A1689V 0.36 deleterious(0.01) probably_damaging(0.99) TCGA-VQ-A8P2-01 16 31212945 31212945 C T PYCARD Silent p.E183E 0.21 TCGA-VQ-A8P2-01 16 31405612 31405612 G T ITGAD Missense_Mutation p.Q29H 0.27 tolerated(0.21) benign(0.016) TCGA-VQ-A8P2-01 16 31422650 31422650 G A ITGAD Missense_Mutation p.A507T 0.19 tolerated(0.18) benign(0.004) TCGA-VQ-A8P2-01 16 31434453 31434453 G A ITGAD Silent p.K933K 0.44 TCGA-VQ-A8P2-01 16 31475792 31475792 C T ARMC5 Missense_Mutation p.P483L 0.57 tolerated(0.18) benign(0.021) TCGA-VQ-A8P2-01 16 3170148 3170148 G A ZNF205 Missense_Mutation p.R496H 0.28 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 16 31927078 31927078 G A ZNF267 Missense_Mutation p.R503H 0.47 tolerated(0.61) benign(0.247) TCGA-VQ-A8P2-01 16 32077660 32077660 C T IGHV3OR16-9 Missense_Mutation p.A92V 0.21 deleterious_low_confidence(0.02) possibly_damaging(0.537) TCGA-VQ-A8P2-01 16 3304166 3304166 G A MEFV Missense_Mutation p.S301L 0.41 tolerated(0.11) benign(0.016) TCGA-VQ-A8P2-01 16 3333852 3333852 G T ZNF263 Missense_Mutation p.G12W 0.29 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 16 3433333 3433333 C T ZSCAN32 Missense_Mutation p.R326Q 0.40 tolerated(0.05) benign(0.18) TCGA-VQ-A8P2-01 16 354441 354441 G A AXIN1 Missense_Mutation p.R373C 0.65 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 16 3576466 3576466 C T CLUAP1 Missense_Mutation p.R304C 0.44 deleterious(0.01) possibly_damaging(0.836) TCGA-VQ-A8P2-01 16 3640333 3640333 C T SLX4 Silent p.E1102E 0.16 TCGA-VQ-A8P2-01 16 3658577 3658577 G A SLX4 Missense_Mutation p.A130V 0.49 tolerated(0.2) benign(0.016) TCGA-VQ-A8P2-01 16 3778008 3778008 G A CREBBP Missense_Mutation p.A2347V 0.44 unknown(0) TCGA-VQ-A8P2-01 16 3778766 3778766 C T CREBBP Silent p.P2094P 0.42 TCGA-VQ-A8P2-01 16 3786097 3786097 T C CREBBP Silent p.L1556L 0.45 TCGA-VQ-A8P2-01 16 4016903 4016903 C T ADCY9 Missense_Mutation p.G979S 0.08 tolerated(0.65) benign(0.051) TCGA-VQ-A8P2-01 16 4024687 4024687 G A ADCY9 Silent p.D951D 0.12 TCGA-VQ-A8P2-01 16 419175 419175 G A MRPL28 Nonsense_Mutation p.R112* 0.36 TCGA-VQ-A8P2-01 16 419990 419990 G A MRPL28 Missense_Mutation p.R77W 0.10 deleterious(0.02) possibly_damaging(0.663) TCGA-VQ-A8P2-01 16 422043 422043 G A TMEM8A Missense_Mutation p.P754S 0.31 tolerated(0.79) benign(0.146) TCGA-VQ-A8P2-01 16 4414845 4414845 G A CORO7 Silent p.C325C 0.43 TCGA-VQ-A8P2-01 16 461404 461404 G A DECR2 Silent p.P235P 0.30 TCGA-VQ-A8P2-01 16 46761148 46761148 C A MYLK3 Missense_Mutation p.K638N 0.38 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 16 46958312 46958312 G A GPT2 Silent p.S408S 0.33 TCGA-VQ-A8P2-01 16 4702770 4702770 G A MGRN1 Missense_Mutation p.V130M 0.47 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 16 47143438 47143438 C T NETO2 Missense_Mutation p.S280N 0.17 deleterious(0.01) possibly_damaging(0.906) TCGA-VQ-A8P2-01 16 47162443 47162443 A G NETO2 Missense_Mutation p.Y92H 0.06 deleterious(0) probably_damaging(0.98) TCGA-VQ-A8P2-01 16 47347725 47347725 C T ITFG1 Missense_Mutation p.G271E 0.30 deleterious(0.01) possibly_damaging(0.587) TCGA-VQ-A8P2-01 16 4810506 4810506 C T ZNF500 Silent p.P249P 0.41 TCGA-VQ-A8P2-01 16 48145813 48145813 C A ABCC12 Missense_Mutation p.E666D 0.42 deleterious(0.02) possibly_damaging(0.517) TCGA-VQ-A8P2-01 16 48210974 48210974 C T ABCC11 Silent p.Q1133Q 0.30 TCGA-VQ-A8P2-01 16 48368167 48368167 T C LONP2 Silent p.S612S 0.41 TCGA-VQ-A8P2-01 16 48395618 48395618 C T SIAH1 Missense_Mutation p.R272Q 0.38 tolerated(0.08) probably_damaging(0.91) TCGA-VQ-A8P2-01 16 48595227 48595227 A G N4BP1 Missense_Mutation p.S443P 0.25 tolerated(0.35) benign(0.002) TCGA-VQ-A8P2-01 16 4862113 4862113 G A GLYR1 Missense_Mutation p.A419V 0.37 tolerated(0.05) possibly_damaging(0.58) TCGA-VQ-A8P2-01 16 4862119 4862119 A G GLYR1 Missense_Mutation p.F417S 0.11 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 16 4871440 4871440 G T GLYR1 Silent p.T249T 0.13 TCGA-VQ-A8P2-01 16 4871594 4871594 G T GLYR1 Missense_Mutation p.A229D 0.36 tolerated(0.08) benign(0.393) TCGA-VQ-A8P2-01 16 4920579 4920579 G A UBN1 Silent p.E458E 0.45 TCGA-VQ-A8P2-01 16 4924348 4924348 C T UBN1 Missense_Mutation p.S646L 0.11 deleterious(0.03) benign(0.004) TCGA-VQ-A8P2-01 16 4930213 4930213 G A UBN1 3'UTR 0.47 TCGA-VQ-A8P2-01 16 4934289 4934289 G A PPL Missense_Mutation p.A1456V 0.45 deleterious(0.04) benign(0.003) TCGA-VQ-A8P2-01 16 4952485 4952485 T - PPL Frame_Shift_Del p.K120Nfs*10 0.28 TCGA-VQ-A8P2-01 16 49669880 49669880 C T ZNF423 Silent p.Q1061Q 0.44 TCGA-VQ-A8P2-01 16 49669922 49669922 C T ZNF423 Silent p.A1047A 0.27 TCGA-VQ-A8P2-01 16 49670022 49670022 C T ZNF423 Missense_Mutation p.R1014H 0.30 deleterious(0.03) benign(0.35) TCGA-VQ-A8P2-01 16 49671297 49671297 T C ZNF423 Missense_Mutation p.K589R 0.47 tolerated(0.12) probably_damaging(0.998) TCGA-VQ-A8P2-01 16 49672099 49672099 T C ZNF423 Missense_Mutation p.K322E 0.36 deleterious(0.01) possibly_damaging(0.573) TCGA-VQ-A8P2-01 16 49672161 49672161 G T ZNF423 Missense_Mutation p.P301H 0.36 tolerated(0.21) benign(0.033) TCGA-VQ-A8P2-01 16 50138981 50138981 A G HEATR3 3'UTR 0.35 TCGA-VQ-A8P2-01 16 5046881 5046881 G A SEC14L5 Missense_Mutation p.R269Q 0.40 deleterious(0.02) probably_damaging(0.999) TCGA-VQ-A8P2-01 16 50667161 50667161 A G NKD1 Silent p.R294R 0.35 TCGA-VQ-A8P2-01 16 50741838 50741838 G T NOD2 Nonsense_Mutation p.E205* 0.09 TCGA-VQ-A8P2-01 16 50756539 50756539 G T NOD2 Missense_Mutation p.W907C 0.33 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 16 50818350 50818350 A C CYLD Missense_Mutation p.N646T 0.32 deleterious(0) probably_damaging(0.989) TCGA-VQ-A8P2-01 16 50828340 50828340 G A CYLD Splice_Site p.X896_splice 0.34 TCGA-VQ-A8P2-01 16 50830394 50830394 G A CYLD Missense_Mutation p.S949N 0.39 tolerated(0.18) benign(0.213) TCGA-VQ-A8P2-01 16 5094341 5094341 C T C16orf89 3'UTR 0.07 TCGA-VQ-A8P2-01 16 51172862 51172862 C T SALL1 Missense_Mutation p.G1091S 0.38 deleterious(0.01) possibly_damaging(0.528) TCGA-VQ-A8P2-01 16 51174373 51174373 G T SALL1 Missense_Mutation p.P587H 0.38 deleterious(0) probably_damaging(0.971) TCGA-VQ-A8P2-01 16 51175572 51175572 G T SALL1 Missense_Mutation p.N187K 0.41 tolerated(0.4) benign(0.23) TCGA-VQ-A8P2-01 16 5134953 5134953 G T FAM86A 3'UTR 0.37 TCGA-VQ-A8P2-01 16 53269096 53269096 G A CHD9 Splice_Site p.X838_splice 0.47 TCGA-VQ-A8P2-01 16 53325670 53325670 G T CHD9 Missense_Mutation p.A1761S 0.48 benign(0.059) TCGA-VQ-A8P2-01 16 53352167 53352167 G A CHD9 Missense_Mutation p.R2527H 0.68 unknown(0) TCGA-VQ-A8P2-01 16 53528516 53528516 C T AKTIP Missense_Mutation p.R139H 0.37 tolerated(0.07) benign(0.016) TCGA-VQ-A8P2-01 16 53534217 53534217 C A AKTIP 5'UTR 0.15 TCGA-VQ-A8P2-01 16 54966628 54966628 C T IRX5 Silent p.T156T 0.11 TCGA-VQ-A8P2-01 16 54966761 54966761 G A IRX5 Missense_Mutation p.E201K 0.40 deleterious(0.01) benign(0.346) TCGA-VQ-A8P2-01 16 55362703 55362703 C T IRX6 Silent p.D271D 0.58 TCGA-VQ-A8P2-01 16 55536720 55536720 C T MMP2 Missense_Mutation p.P600L 0.35 deleterious(0.03) benign(0.007) TCGA-VQ-A8P2-01 16 55616858 55616858 G A LPCAT2 Missense_Mutation p.E495K 0.38 deleterious(0.04) benign(0.099) TCGA-VQ-A8P2-01 16 55854337 55854337 C T CES1 Missense_Mutation p.V250M 0.22 deleterious(0) probably_damaging(0.982) TCGA-VQ-A8P2-01 16 56377904 56377904 C T GNAO1 3'UTR 0.52 TCGA-VQ-A8P2-01 16 56473614 56473614 G A NUDT21 Silent p.D142D 0.39 TCGA-VQ-A8P2-01 16 56509984 56509984 C A OGFOD1 Missense_Mutation p.S499Y 0.13 deleterious(0.01) probably_damaging(0.981) TCGA-VQ-A8P2-01 16 56667821 56667821 C T MT1M 3'UTR 0.39 TCGA-VQ-A8P2-01 16 56782283 56782283 C T NUP93 Missense_Mutation p.R42C 0.18 deleterious(0) possibly_damaging(0.847) TCGA-VQ-A8P2-01 16 56875718 56875718 C T NUP93 Silent p.P774P 0.38 TCGA-VQ-A8P2-01 16 56913478 56913478 G A SLC12A3 Missense_Mutation p.A454T 0.41 deleterious(0.02) benign(0.038) TCGA-VQ-A8P2-01 16 57060556 57060556 C T NLRC5 Silent p.G567G 0.32 TCGA-VQ-A8P2-01 16 57206270 57206270 C A FAM192A Missense_Mutation p.G81C 0.15 deleterious(0.02) probably_damaging(1) TCGA-VQ-A8P2-01 16 57397516 57397516 G A CCL22 3'UTR 0.45 TCGA-VQ-A8P2-01 16 57413656 57413656 C T CX3CL1 Missense_Mutation p.R61C 0.48 deleterious(0.03) possibly_damaging(0.829) TCGA-VQ-A8P2-01 16 57416904 57416904 G A CX3CL1 Missense_Mutation p.R385Q 0.31 deleterious(0.02) possibly_damaging(0.889) TCGA-VQ-A8P2-01 16 57463180 57463180 C T CIAPIN1 Missense_Mutation p.D281N 0.47 deleterious(0.04) possibly_damaging(0.879) TCGA-VQ-A8P2-01 16 57490441 57490441 C T COQ9 Missense_Mutation p.A135V 0.35 tolerated(0.1) benign(0.389) TCGA-VQ-A8P2-01 16 57507619 57507619 C T DOK4 Silent p.S256S 0.15 TCGA-VQ-A8P2-01 16 57559840 57559840 G A CCDC102A Missense_Mutation p.S262F 0.44 tolerated(0.85) probably_damaging(0.989) TCGA-VQ-A8P2-01 16 57559852 57559852 C T CCDC102A Missense_Mutation p.R258Q 0.41 tolerated(0.19) possibly_damaging(0.56) TCGA-VQ-A8P2-01 16 57695724 57695724 C T GPR56 Missense_Mutation p.R600C 0.41 deleterious(0) probably_damaging(0.932) TCGA-VQ-A8P2-01 16 57761269 57761269 C A CCDC135 Missense_Mutation p.S715Y 0.44 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 16 57778375 57778375 G A KATNB1 Missense_Mutation p.G81S 0.36 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 16 57787093 57787093 G T KATNB1 Silent p.R320R 0.58 TCGA-VQ-A8P2-01 16 57800799 57800799 G A KIFC3 Silent p.L439L 0.32 TCGA-VQ-A8P2-01 16 57800849 57800849 G A KIFC3 Missense_Mutation p.R423C 0.41 deleterious(0.04) probably_damaging(0.996) TCGA-VQ-A8P2-01 16 58001199 58001199 C A CNGB1 Splice_Site 0.46 TCGA-VQ-A8P2-01 16 58031708 58031708 G A ZNF319 Silent p.H154H 0.41 TCGA-VQ-A8P2-01 16 58077214 58077214 G A MMP15 Silent p.T468T 0.33 TCGA-VQ-A8P2-01 16 58201622 58201622 G T CSNK2A2 Nonsense_Mutation p.Y197* 0.47 TCGA-VQ-A8P2-01 16 58314586 58314586 C T PRSS54 Missense_Mutation p.G244S 0.25 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 16 58620613 58620613 C T CNOT1 Missense_Mutation p.R158H 0.44 tolerated(0.06) possibly_damaging(0.773) TCGA-VQ-A8P2-01 16 58701369 58701369 C T SLC38A7 Missense_Mutation p.G437R 0.50 deleterious(0) probably_damaging(0.988) TCGA-VQ-A8P2-01 16 61761082 61761082 A G CDH8 Silent p.I484I 0.40 TCGA-VQ-A8P2-01 16 618085 618085 G T NHLRC4 Missense_Mutation p.G13V 0.29 tolerated(0.08) possibly_damaging(0.734) TCGA-VQ-A8P2-01 16 618240 618240 G A NHLRC4 Missense_Mutation p.A65T 0.25 deleterious(0) possibly_damaging(0.831) TCGA-VQ-A8P2-01 16 61851610 61851610 G T CDH8 Silent p.S350S 0.25 TCGA-VQ-A8P2-01 16 61935344 61935344 T - CDH8 Frame_Shift_Del p.I96Sfs*16 0.28 TCGA-VQ-A8P2-01 16 628882 628882 G A PIGQ Silent p.S389S 0.10 TCGA-VQ-A8P2-01 16 64984742 64984742 C T CDH11 Missense_Mutation p.A608T 0.24 deleterious(0.01) benign(0.154) TCGA-VQ-A8P2-01 16 66434856 66434856 G A CDH5 Missense_Mutation p.A592T 0.49 tolerated(0.44) benign(0.266) TCGA-VQ-A8P2-01 16 66600709 66600709 C T CMTM1 Missense_Mutation p.A98V 0.52 tolerated(0.24) possibly_damaging(0.866) TCGA-VQ-A8P2-01 16 66858767 66858767 A G NAE1 Silent p.S80S 0.37 TCGA-VQ-A8P2-01 16 66945906 66945906 G - CDH16 Frame_Shift_Del p.K563Sfs*22 0.29 TCGA-VQ-A8P2-01 16 66997456 66997458 TCT - CES3 In_Frame_Del p.F118del 0.52 TCGA-VQ-A8P2-01 16 67262894 67262894 C A TMEM208 Missense_Mutation p.L134I 0.36 tolerated(0.32) possibly_damaging(0.742) TCGA-VQ-A8P2-01 16 67267655 67267655 C T FHOD1 Missense_Mutation p.A651T 0.25 tolerated(0.33) benign(0.009) TCGA-VQ-A8P2-01 16 67270915 67270915 G A FHOD1 Missense_Mutation p.R366C 0.51 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8P2-01 16 67298957 67298957 G A SLC9A5 Silent p.A676A 0.26 TCGA-VQ-A8P2-01 16 67328048 67328048 G A KCTD19 Silent p.F539F 0.44 TCGA-VQ-A8P2-01 16 67328066 67328066 G T KCTD19 Silent p.A533A 0.07 TCGA-VQ-A8P2-01 16 67375891 67375891 T G LRRC36 Silent p.S34S 0.15 TCGA-VQ-A8P2-01 16 67401314 67401314 G A LRRC36 Silent p.L383L 0.41 TCGA-VQ-A8P2-01 16 67683769 67683769 G A RLTPR Silent p.A660A 0.39 TCGA-VQ-A8P2-01 16 67685089 67685089 G T RLTPR Splice_Site p.X729_splice 0.31 TCGA-VQ-A8P2-01 16 67688796 67688796 G T RLTPR Missense_Mutation p.R1233M 0.11 tolerated(0.16) probably_damaging(0.997) TCGA-VQ-A8P2-01 16 67762384 67762384 G T RANBP10 Missense_Mutation p.H461Q 0.44 tolerated(0.07) probably_damaging(0.997) TCGA-VQ-A8P2-01 16 67877382 67877382 C T THAP11 Missense_Mutation p.R309C 0.43 deleterious_low_confidence(0) possibly_damaging(0.876) TCGA-VQ-A8P2-01 16 67911505 67911505 C T EDC4 Silent p.S245S 0.32 TCGA-VQ-A8P2-01 16 67915312 67915312 G A EDC4 Silent p.K927K 0.35 TCGA-VQ-A8P2-01 16 67964199 67964199 C T CTRL Silent p.L174L 0.12 TCGA-VQ-A8P2-01 16 67968734 67968734 G A PSMB10 Missense_Mutation p.R226W 0.13 deleterious(0) benign(0.234) TCGA-VQ-A8P2-01 16 67974135 67974135 C T LCAT Missense_Mutation p.G332D 0.11 deleterious(0.03) possibly_damaging(0.803) TCGA-VQ-A8P2-01 16 68055445 68055445 C A DDX28 3'UTR 0.69 TCGA-VQ-A8P2-01 16 68104050 68104050 C T DUS2 Nonsense_Mutation p.R190* 0.30 TCGA-VQ-A8P2-01 16 69143670 69143670 C T HAS3 Silent p.G124G 0.32 TCGA-VQ-A8P2-01 16 69143675 69143675 G A HAS3 Missense_Mutation p.R126H 0.32 tolerated(0.09) benign(0.009) TCGA-VQ-A8P2-01 16 69155011 69155011 C T CHTF8 Missense_Mutation p.R29H 0.39 tolerated(0.06) benign(0.303) TCGA-VQ-A8P2-01 16 69200969 69200969 T - CIRH1A Intron 0.37 TCGA-VQ-A8P2-01 16 69402323 69402323 C A TERF2 Missense_Mutation p.Q259H 0.43 tolerated(0.11) benign(0.005) TCGA-VQ-A8P2-01 16 69481062 69481062 G T CYB5B Nonsense_Mutation p.G62* 0.09 TCGA-VQ-A8P2-01 16 69875943 69875943 G A WWP2 Silent p.S165S 0.19 TCGA-VQ-A8P2-01 16 69905710 69905710 G A WWP2 Silent p.T193T 0.15 TCGA-VQ-A8P2-01 16 69973248 69973248 C T WWP2 Silent p.S815S 0.31 TCGA-VQ-A8P2-01 16 70020353 70020353 C T PDXDC2P RNA 0.31 TCGA-VQ-A8P2-01 16 70310464 70310464 A G AARS Missense_Mutation p.V135A 0.15 deleterious(0.04) probably_damaging(0.997) TCGA-VQ-A8P2-01 16 70500891 70500891 C T FUK Intron 0.38 TCGA-VQ-A8P2-01 16 706803 706803 C A WDR90 Missense_Mutation p.F758L 0.44 tolerated(0.56) probably_damaging(0.982) TCGA-VQ-A8P2-01 16 70690868 70690868 G T IL34 Missense_Mutation p.R82S 0.33 deleterious(0.02) possibly_damaging(0.474) TCGA-VQ-A8P2-01 16 712021 712021 G A WDR90 Missense_Mutation p.R1332H 0.48 tolerated(0.12) benign(0.002) TCGA-VQ-A8P2-01 16 71318686 71318686 G A CMTR2 Missense_Mutation p.R380C 0.42 deleterious(0.04) benign(0.032) TCGA-VQ-A8P2-01 16 71570593 71570593 A - CHST4 Frame_Shift_Del p.M7* 0.36 TCGA-VQ-A8P2-01 16 71602119 71602119 G A TAT Silent p.C431C 0.29 TCGA-VQ-A8P2-01 16 71701209 71701209 T C PHLPP2 Silent p.K552K 0.09 TCGA-VQ-A8P2-01 16 71779491 71779491 A G AP1G1 Missense_Mutation p.V589A 0.39 tolerated(0.27) benign(0.003) TCGA-VQ-A8P2-01 16 71787749 71787749 C T AP1G1 Missense_Mutation p.R427H 0.31 tolerated(0.53) benign(0.006) TCGA-VQ-A8P2-01 16 71894208 71894208 G A ZNF821 Missense_Mutation p.R318C 0.38 deleterious(0) possibly_damaging(0.891) TCGA-VQ-A8P2-01 16 72120580 72120580 G T TXNL4B Missense_Mutation p.P136T 0.36 tolerated(0.32) benign(0.303) TCGA-VQ-A8P2-01 16 72166727 72166727 G A PMFBP1 Missense_Mutation p.A456V 0.42 tolerated(0.38) benign(0.006) TCGA-VQ-A8P2-01 16 72821414 72821414 C T ZFHX3 Silent p.S3587S 0.39 TCGA-VQ-A8P2-01 16 72829761 72829761 G A ZFHX3 Nonsense_Mutation p.Q2274* 0.30 TCGA-VQ-A8P2-01 16 72830568 72830568 C T ZFHX3 Missense_Mutation p.V2005I 0.45 benign(0.434) TCGA-VQ-A8P2-01 16 72830958 72830958 C T ZFHX3 Missense_Mutation p.E1875K 0.34 possibly_damaging(0.905) TCGA-VQ-A8P2-01 16 72993300 72993300 C T ZFHX3 Missense_Mutation p.G249S 0.30 probably_damaging(0.987) TCGA-VQ-A8P2-01 16 74366507 74366507 C T AC009120.6 RNA 0.17 TCGA-VQ-A8P2-01 16 74516931 74516931 G A GLG1 Missense_Mutation p.R555W 0.36 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 16 745552 745552 G A FBXL16 Silent p.D335D 0.27 TCGA-VQ-A8P2-01 16 74719439 74719439 C A MLKL Missense_Mutation p.K255N 0.08 deleterious(0) possibly_damaging(0.808) TCGA-VQ-A8P2-01 16 74725314 74725314 C A MLKL Nonsense_Mutation p.E195* 0.36 TCGA-VQ-A8P2-01 16 75146774 75146774 C T LDHD Missense_Mutation p.V402M 0.53 deleterious(0.03) benign(0.06) TCGA-VQ-A8P2-01 16 75669950 75669950 G A KARS Missense_Mutation p.R205C 0.47 deleterious(0) benign(0.164) TCGA-VQ-A8P2-01 16 76350390 76350390 C T CNTNAP4 Missense_Mutation p.P31S 0.16 tolerated(0.06) probably_damaging(0.936) TCGA-VQ-A8P2-01 16 7637259 7637259 A C RBFOX1 Missense_Mutation p.K162T 0.43 deleterious(0.04) benign(0.078) TCGA-VQ-A8P2-01 16 76483718 76483718 A G CNTNAP4 Intron 0.43 TCGA-VQ-A8P2-01 16 772095 772095 G A FAM173A Silent p.R140R 0.19 TCGA-VQ-A8P2-01 16 77228918 77228918 A T MON1B Missense_Mutation p.S388C 0.56 deleterious(0.01) possibly_damaging(0.735) TCGA-VQ-A8P2-01 16 77465471 77465471 G A ADAMTS18 Silent p.A72A 0.41 TCGA-VQ-A8P2-01 16 78458894 78458894 G T WWOX Missense_Mutation p.D245Y 0.40 deleterious(0) possibly_damaging(0.903) TCGA-VQ-A8P2-01 16 79632791 79632791 G A MAF Silent p.L337L 0.41 TCGA-VQ-A8P2-01 16 79633553 79633553 C T MAF Missense_Mutation p.E83K 0.31 tolerated(0.07) unknown(0) TCGA-VQ-A8P2-01 16 815535 815535 C T MSLN Missense_Mutation p.S238L 0.43 tolerated(0.09) probably_damaging(0.979) TCGA-VQ-A8P2-01 16 816131 816131 T C MSLN Missense_Mutation p.L323P 0.38 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 16 81939086 81939086 C T PLCG2 Silent p.L481L 0.17 TCGA-VQ-A8P2-01 16 81953246 81953246 G A PLCG2 Missense_Mutation p.E738K 0.41 tolerated(0.07) benign(0.099) TCGA-VQ-A8P2-01 16 82032923 82032923 A - SDR42E1 Frame_Shift_Del p.F325Lfs*3 0.28 TCGA-VQ-A8P2-01 16 82033708 82033708 C T SDR42E1 Missense_Mutation p.V64I 0.41 tolerated(0.28) benign(0.045) TCGA-VQ-A8P2-01 16 83994327 83994327 G A OSGIN1 Missense_Mutation p.V120M 0.12 tolerated(0.07) benign(0.11) TCGA-VQ-A8P2-01 16 84050247 84050247 G A SLC38A8 Missense_Mutation p.R347W 0.40 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 16 84094378 84094378 C T MBTPS1 Silent p.S871S 0.27 TCGA-VQ-A8P2-01 16 84101343 84101343 C T MBTPS1 Silent p.S719S 0.15 TCGA-VQ-A8P2-01 16 84211495 84211495 C T DNAAF1 3'UTR 0.40 TCGA-VQ-A8P2-01 16 84215474 84215474 G T TAF1C Silent p.S304S 0.11 TCGA-VQ-A8P2-01 16 84270774 84270774 C A KCNG4 Missense_Mutation p.E106D 0.42 tolerated(0.6) possibly_damaging(0.723) TCGA-VQ-A8P2-01 16 84473125 84473125 G A ATP2C2 Missense_Mutation p.A402T 0.39 deleterious(0.03) probably_damaging(1) TCGA-VQ-A8P2-01 16 85106596 85106596 G A KIAA0513 Silent p.V165V 0.33 TCGA-VQ-A8P2-01 16 85813388 85813388 C T EMC8 Missense_Mutation p.D187N 0.26 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 16 85838736 85838736 G A COX4I1 Intron 0.38 TCGA-VQ-A8P2-01 16 85946782 85946782 C T IRF8 Missense_Mutation p.P165S 0.41 tolerated(0.07) probably_damaging(0.998) TCGA-VQ-A8P2-01 16 86601209 86601209 G A FOXC2 Missense_Mutation p.E90K 0.35 deleterious(0) benign(0.43) TCGA-VQ-A8P2-01 16 87367823 87367823 C T FBXO31 Missense_Mutation p.D356N 0.51 tolerated(0.07) benign(0.028) TCGA-VQ-A8P2-01 16 87377318 87377318 G A FBXO31 Silent p.H181H 0.36 TCGA-VQ-A8P2-01 16 87435850 87435850 G A MAP1LC3B Missense_Mutation p.D56N 0.27 tolerated(0.08) benign(0.422) TCGA-VQ-A8P2-01 16 87448130 87448130 C T ZCCHC14 Missense_Mutation p.R361Q 0.38 deleterious(0.02) benign(0.067) TCGA-VQ-A8P2-01 16 87636733 87636733 T G JPH3 5'UTR 0.39 TCGA-VQ-A8P2-01 16 87788899 87788899 C A KLHDC4 Splice_Site p.X91_splice 0.30 TCGA-VQ-A8P2-01 16 87960373 87960373 G A CA5A Silent p.D107D 0.33 TCGA-VQ-A8P2-01 16 88691140 88691141 - C ZC3H18 Frame_Shift_Ins p.R680Qfs*14 0.53 TCGA-VQ-A8P2-01 16 88752832 88752832 C T SNAI3 5'UTR 0.35 TCGA-VQ-A8P2-01 16 88872026 88872026 G A CDT1 Missense_Mutation p.V223I 0.46 deleterious(0.04) benign(0.43) TCGA-VQ-A8P2-01 16 88931318 88931318 G A PABPN1L Silent p.G199G 0.21 TCGA-VQ-A8P2-01 16 89347145 89347145 G A ANKRD11 Silent p.D1935D 0.31 TCGA-VQ-A8P2-01 16 89347724 89347724 C T ANKRD11 Silent p.S1742S 0.46 TCGA-VQ-A8P2-01 16 89347772 89347772 G T ANKRD11 Silent p.S1726S 0.36 TCGA-VQ-A8P2-01 16 89348253 89348253 G T ANKRD11 Missense_Mutation p.A1566D 0.50 benign(0.055) TCGA-VQ-A8P2-01 16 89371649 89371649 G A ANKRD11 Missense_Mutation p.A64V 0.10 benign(0) TCGA-VQ-A8P2-01 16 89650441 89650441 C T CPNE7 Silent p.I221I 0.12 TCGA-VQ-A8P2-01 16 89661897 89661897 C T CPNE7 Silent p.A550A 0.52 TCGA-VQ-A8P2-01 16 89776252 89776252 G A VPS9D1 Missense_Mutation p.R441C 0.30 deleterious(0.01) benign(0.039) TCGA-VQ-A8P2-01 16 89811418 89811418 G A FANCA Missense_Mutation p.P1192L 0.48 deleterious(0.04) possibly_damaging(0.726) TCGA-VQ-A8P2-01 16 8995977 8995977 G T USP7 Missense_Mutation p.A670D 0.41 deleterious(0.04) benign(0) TCGA-VQ-A8P2-01 16 9004637 9004637 C T USP7 Missense_Mutation p.D376N 0.44 deleterious(0) probably_damaging(0.963) TCGA-VQ-A8P2-01 16 90124416 90124416 A G PRDM7 3'UTR 0.28 TCGA-VQ-A8P2-01 16 9857464 9857464 G A GRIN2A Missense_Mutation p.L1313F 0.37 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 16 9862767 9862767 G A GRIN2A Missense_Mutation p.R846C 0.49 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 17 10296273 10296273 C T MYH8 Missense_Mutation p.A1780T 0.36 deleterious(0.04) benign(0.258) TCGA-VQ-A8P2-01 17 10350534 10350534 C A MYH4 Splice_Site p.X1656_splice 0.18 TCGA-VQ-A8P2-01 17 10404983 10404983 G A MYH1 Silent p.S1092S 0.37 TCGA-VQ-A8P2-01 17 10408492 10408492 A G MYH1 Missense_Mutation p.M808T 0.14 deleterious(0.04) probably_damaging(0.993) TCGA-VQ-A8P2-01 17 10429030 10429030 T G MYH2 Missense_Mutation p.K1451Q 0.46 deleterious(0.01) probably_damaging(0.978) TCGA-VQ-A8P2-01 17 10432665 10432665 T C MYH2 Missense_Mutation p.E1084G 0.17 deleterious(0.02) probably_damaging(1) TCGA-VQ-A8P2-01 17 10441082 10441082 A G MYH2 Missense_Mutation p.M496T 0.39 deleterious(0.02) possibly_damaging(0.824) TCGA-VQ-A8P2-01 17 11511526 11511526 C T DNAH9 Silent p.A166A 0.07 TCGA-VQ-A8P2-01 17 11572896 11572896 T C DNAH9 Silent p.D1046D 0.31 TCGA-VQ-A8P2-01 17 11593706 11593706 G A DNAH9 Missense_Mutation p.E1523K 0.40 probably_damaging(0.989) TCGA-VQ-A8P2-01 17 11648315 11648315 C T DNAH9 Missense_Mutation p.R2105W 0.35 probably_damaging(0.98) TCGA-VQ-A8P2-01 17 11666915 11666915 C T DNAH9 Missense_Mutation p.A2385V 0.29 benign(0.027) TCGA-VQ-A8P2-01 17 11738106 11738106 C A DNAH9 Missense_Mutation p.A3133D 0.25 benign(0.071) TCGA-VQ-A8P2-01 17 11757384 11757384 C T DNAH9 Missense_Mutation p.A3191V 0.29 possibly_damaging(0.788) TCGA-VQ-A8P2-01 17 1198851 1198851 C A TUSC5 Missense_Mutation p.L152I 0.36 deleterious(0) possibly_damaging(0.874) TCGA-VQ-A8P2-01 17 1264557 1264557 G A YWHAE Missense_Mutation p.A136V 0.30 deleterious_low_confidence(0.02) possibly_damaging(0.468) TCGA-VQ-A8P2-01 17 12896076 12896076 C T ELAC2 3'UTR 0.19 TCGA-VQ-A8P2-01 17 1373956 1373956 C A MYO1C Missense_Mutation p.G747V 0.30 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 17 1375256 1375256 G A MYO1C Missense_Mutation p.R656C 0.33 deleterious(0) probably_damaging(0.965) TCGA-VQ-A8P2-01 17 1400092 1400092 C A INPP5K Missense_Mutation p.K323N 0.26 tolerated(0.16) benign(0.009) TCGA-VQ-A8P2-01 17 14204937 14204937 G A HS3ST3B1 Silent p.A34A 0.35 TCGA-VQ-A8P2-01 17 15215628 15215628 C T TEKT3 Missense_Mutation p.R350H 0.11 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 17 15641317 15641317 C T TBC1D26 Missense_Mutation p.R69C 0.11 tolerated(0.09) benign(0.001) TCGA-VQ-A8P2-01 17 1577106 1577106 C T PRPF8 Missense_Mutation p.G1127D 0.39 deleterious(0.05) benign(0.224) TCGA-VQ-A8P2-01 17 1582973 1582973 C T PRPF8 Missense_Mutation p.A407T 0.35 deleterious(0) possibly_damaging(0.895) TCGA-VQ-A8P2-01 17 1585238 1585238 C T PRPF8 Missense_Mutation p.D177N 0.13 deleterious(0.03) probably_damaging(0.989) TCGA-VQ-A8P2-01 17 15878301 15878301 G A ADORA2B Missense_Mutation p.R215H 0.30 deleterious(0.05) benign(0.007) TCGA-VQ-A8P2-01 17 15961278 15961278 C T NCOR1 Silent p.E2037E 0.34 TCGA-VQ-A8P2-01 17 15968818 15968818 G A NCOR1 Silent p.L1644L 0.33 TCGA-VQ-A8P2-01 17 15983785 15983785 G A NCOR1 Nonsense_Mutation p.R1113* 0.35 TCGA-VQ-A8P2-01 17 16137311 16137311 C T PIGL Missense_Mutation p.R88C 0.49 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 17 16285785 16285785 C - UBB Frame_Shift_Del p.D191Tfs*35 0.30 TCGA-VQ-A8P2-01 17 16329476 16329476 G A TRPV2 Missense_Mutation p.E330K 0.41 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 17 16330084 16330084 G A TRPV2 Missense_Mutation p.A382T 0.36 tolerated(0.16) benign(0.075) TCGA-VQ-A8P2-01 17 16527182 16527182 C T ZNF624 Missense_Mutation p.A340T 0.33 tolerated(0.46) benign(0.017) TCGA-VQ-A8P2-01 17 16979094 16979094 G A MPRIP Missense_Mutation p.R65Q 0.18 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 17 16981338 16981338 G A MPRIP Missense_Mutation p.R72Q 0.07 deleterious(0.01) probably_damaging(0.997) TCGA-VQ-A8P2-01 17 17106109 17106109 C T PLD6 Missense_Mutation p.C244Y 0.40 tolerated_low_confidence(0.71) benign(0.002) TCGA-VQ-A8P2-01 17 17118502 17118502 G A FLCN Nonsense_Mutation p.R477* 0.24 TCGA-VQ-A8P2-01 17 17152297 17152297 G T COPS3 Missense_Mutation p.F360L 0.30 deleterious(0) probably_damaging(0.98) TCGA-VQ-A8P2-01 17 17380408 17380408 C T MED9 Missense_Mutation p.P18L 0.52 deleterious_low_confidence(0.01) possibly_damaging(0.541) TCGA-VQ-A8P2-01 17 17398534 17398534 G A RASD1 Missense_Mutation p.R251C 0.48 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8P2-01 17 17399258 17399258 A G RASD1 Missense_Mutation p.S80P 0.29 deleterious(0.02) probably_damaging(0.999) TCGA-VQ-A8P2-01 17 17399358 17399358 G A RASD1 Silent p.T46T 0.40 TCGA-VQ-A8P2-01 17 17764838 17764838 G A TOM1L2 Silent p.V410V 0.25 TCGA-VQ-A8P2-01 17 17962195 17962196 - T GID4 Frame_Shift_Ins p.Y209Lfs*8 0.27 TCGA-VQ-A8P2-01 17 18051427 18051427 G T MYO15A Missense_Mutation p.Q2198H 0.48 unknown(0) TCGA-VQ-A8P2-01 17 18158147 18158147 T C FLII Missense_Mutation p.T117A 0.25 tolerated(0.28) benign(0.103) TCGA-VQ-A8P2-01 17 18211672 18211672 G A TOP3A Nonsense_Mutation p.R103* 0.14 TCGA-VQ-A8P2-01 17 18226223 18226223 A G SMCR8 Missense_Mutation p.M885V 0.33 tolerated(0.31) benign(0) TCGA-VQ-A8P2-01 17 18630843 18630843 G A TRIM16L 5'UTR 0.11 TCGA-VQ-A8P2-01 17 18918454 18918454 G A SLC5A10 Missense_Mutation p.D411N 0.35 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8P2-01 17 19232960 19232960 G T EPN2 Missense_Mutation p.A471S 0.08 tolerated(0.41) benign(0.013) TCGA-VQ-A8P2-01 17 19284836 19284836 G A MAPK7 Silent p.P438P 0.44 TCGA-VQ-A8P2-01 17 1936871 1936871 C T DPH1 Missense_Mutation p.A50V 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A8P2-01 17 19480674 19480674 C T SLC47A1 Silent p.N507N 0.53 TCGA-VQ-A8P2-01 17 19617159 19617159 C T SLC47A2 Missense_Mutation p.R141Q 0.12 tolerated(0.07) benign(0.241) TCGA-VQ-A8P2-01 17 19643657 19643657 C T ALDH3A1 Missense_Mutation p.R314H 0.41 tolerated(0.12) possibly_damaging(0.802) TCGA-VQ-A8P2-01 17 20013856 20013856 C T SPECC1 Silent p.S88S 0.14 TCGA-VQ-A8P2-01 17 20108670 20108670 A G SPECC1 Silent p.L436L 0.37 TCGA-VQ-A8P2-01 17 20363687 20363687 C T LGALS9B Missense_Mutation p.V37I 0.26 tolerated(0.19) benign(0.034) TCGA-VQ-A8P2-01 17 20907520 20907520 G A USP22 Silent p.S510S 0.51 TCGA-VQ-A8P2-01 17 20931866 20931866 C T USP22 Missense_Mutation p.R98Q 0.33 tolerated(0.68) benign(0.007) TCGA-VQ-A8P2-01 17 21202199 21202199 G A MAP2K3 Silent p.R42R 0.12 TCGA-VQ-A8P2-01 17 21217655 21217655 G T MAP2K3 3'UTR 0.28 TCGA-VQ-A8P2-01 17 2235488 2235488 G A TSR1 Missense_Mutation p.P491S 0.38 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 17 2298237 2298237 C T MNT Silent p.T195T 0.36 TCGA-VQ-A8P2-01 17 2596113 2596113 C T CLUH Silent p.R1052R 0.35 TCGA-VQ-A8P2-01 17 2604518 2604518 C T CLUH Missense_Mutation p.R276H 0.40 tolerated(0.06) benign(0.223) TCGA-VQ-A8P2-01 17 2605327 2605327 C T CLUH Missense_Mutation p.R129H 0.29 deleterious(0.04) possibly_damaging(0.649) TCGA-VQ-A8P2-01 17 26107803 26107803 C T NOS2 Missense_Mutation p.E332K 0.44 tolerated(0.32) probably_damaging(1) TCGA-VQ-A8P2-01 17 26209727 26209727 G A LYRM9 5'UTR 0.38 TCGA-VQ-A8P2-01 17 26851811 26851811 C T FOXN1 Silent p.A138A 0.29 TCGA-VQ-A8P2-01 17 26939371 26939371 G A SGK494 Silent p.C187C 0.69 TCGA-VQ-A8P2-01 17 27009836 27009836 C T SUPT6H Silent p.P563P 0.38 TCGA-VQ-A8P2-01 17 27014189 27014189 C A SUPT6H Silent p.A928A 0.11 TCGA-VQ-A8P2-01 17 27030675 27030675 C A PROCA1 Missense_Mutation p.E304D 0.40 tolerated(0.12) benign(0.133) TCGA-VQ-A8P2-01 17 27068435 27068435 C T NEK8 Silent p.S632S 0.35 TCGA-VQ-A8P2-01 17 27069014 27069014 G T NEK8 3'UTR 0.40 TCGA-VQ-A8P2-01 17 27233902 27233902 A G PHF12 Silent p.S884S 0.42 TCGA-VQ-A8P2-01 17 27308956 27308956 G A SEZ6 Nonsense_Mutation p.R53* 0.29 TCGA-VQ-A8P2-01 17 27493145 27493145 G T MYO18A Missense_Mutation p.P272T 0.08 deleterious(0) probably_damaging(0.954) TCGA-VQ-A8P2-01 17 27861210 27861210 G A TAOK1 Silent p.L812L 0.45 TCGA-VQ-A8P2-01 17 27945883 27945883 G A CORO6 Silent p.N186N 0.68 TCGA-VQ-A8P2-01 17 27959375 27959375 G - SSH2 Frame_Shift_Del p.P919Qfs*12 0.47 TCGA-VQ-A8P2-01 17 28614958 28614958 C T BLMH Missense_Mutation p.R110H 0.16 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 17 28712090 28712090 G A CPD Missense_Mutation p.G277E 0.35 tolerated(0.09) probably_damaging(0.996) TCGA-VQ-A8P2-01 17 28789051 28789051 G A CPD Missense_Mutation p.A1263T 0.56 deleterious(0.03) probably_damaging(0.995) TCGA-VQ-A8P2-01 17 29164263 29164264 - A ATAD5 Frame_Shift_Ins p.S672Ifs*2 0.26 TCGA-VQ-A8P2-01 17 29587386 29587386 G T NF1 Splice_Site p.X1477_splice 0.13 TCGA-VQ-A8P2-01 17 29632499 29632499 C A EVI2B Missense_Mutation p.Q43H 0.06 tolerated(0.54) benign(0) TCGA-VQ-A8P2-01 17 29850609 29850609 G A RAB11FIP4 Missense_Mutation p.D337N 0.32 tolerated(0.09) benign(0.406) TCGA-VQ-A8P2-01 17 30615996 30615996 C - RHBDL3 Frame_Shift_Del p.P162Hfs*5 0.26 TCGA-VQ-A8P2-01 17 31075990 31075990 C T MYO1D Missense_Mutation p.R501Q 0.16 tolerated(0.11) benign(0.206) TCGA-VQ-A8P2-01 17 32483483 32483483 G T ASIC2 Silent p.T23T 0.19 TCGA-VQ-A8P2-01 17 32687606 32687606 A G CCL1 Missense_Mutation p.L88P 0.33 deleterious(0.01) possibly_damaging(0.877) TCGA-VQ-A8P2-01 17 32953588 32953588 C T TMEM132E Silent p.F170F 0.27 TCGA-VQ-A8P2-01 17 33259422 33259422 G A CCT6B Silent p.V437V 0.41 TCGA-VQ-A8P2-01 17 33329793 33329793 G A LIG3 Silent p.T927T 0.48 TCGA-VQ-A8P2-01 17 3336205 3336205 C A OR1E2 Nonsense_Mutation p.E311* 0.37 TCGA-VQ-A8P2-01 17 33586501 33586501 C T SLFN5 Silent p.V264V 0.14 TCGA-VQ-A8P2-01 17 33749276 33749276 C T SLFN12 Missense_Mutation p.D258N 0.25 tolerated(0.72) benign(0.013) TCGA-VQ-A8P2-01 17 3384897 3384898 - A ASPA Frame_Shift_Ins p.M82Nfs*8 0.35 TCGA-VQ-A8P2-01 17 34073271 34073271 C T GAS2L2 Silent p.R415R 0.09 TCGA-VQ-A8P2-01 17 34079742 34079742 C T GAS2L2 Missense_Mutation p.R43H 0.41 deleterious(0.02) probably_damaging(0.978) TCGA-VQ-A8P2-01 17 34171753 34171753 G T TAF15 Missense_Mutation p.G484C 0.24 deleterious_low_confidence(0) unknown(0) TCGA-VQ-A8P2-01 17 34183781 34183781 A G C17orf66 Missense_Mutation p.V394A 0.33 tolerated(0.21) benign(0.136) TCGA-VQ-A8P2-01 17 34304730 34304730 G A CCL16 Missense_Mutation p.P79S 0.34 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8P2-01 17 34340843 34340843 C T CCL23 Silent p.P81P 0.09 TCGA-VQ-A8P2-01 17 34849834 34849834 G T ZNHIT3 Missense_Mutation p.Q90H 0.13 tolerated(0.08) possibly_damaging(0.8) TCGA-VQ-A8P2-01 17 34856715 34856715 G A MYO19 Nonsense_Mutation p.R778* 0.23 TCGA-VQ-A8P2-01 17 34893785 34893785 A G PIGW Missense_Mutation p.T279A 0.21 tolerated(0.06) benign(0.01) TCGA-VQ-A8P2-01 17 34893938 34893938 C T PIGW Nonsense_Mutation p.R330* 0.35 TCGA-VQ-A8P2-01 17 34954660 34954660 C T DHRS11 Silent p.D142D 0.34 TCGA-VQ-A8P2-01 17 34956148 34956148 G A DHRS11 Missense_Mutation p.D211N 0.08 tolerated(0.56) benign(0) TCGA-VQ-A8P2-01 17 35346584 35346584 C T AATF Silent p.I396I 0.33 TCGA-VQ-A8P2-01 17 3558540 3558540 C T CTNS Missense_Mutation p.R119C 0.38 deleterious(0) possibly_damaging(0.761) TCGA-VQ-A8P2-01 17 3563179 3563179 A G CTNS Missense_Mutation p.T294A 0.45 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 17 3572818 3572818 C A EMC6 3'UTR 0.39 TCGA-VQ-A8P2-01 17 35797976 35797976 G A TADA2A Intron 0.39 TCGA-VQ-A8P2-01 17 3599264 3599264 C T P2RX5 Silent p.S12S 0.18 TCGA-VQ-A8P2-01 17 36002139 36002139 C A DDX52 Nonsense_Mutation p.E96* 0.30 TCGA-VQ-A8P2-01 17 36065015 36065015 C T HNF1B Silent p.L416L 0.53 TCGA-VQ-A8P2-01 17 3631447 3631447 G A ITGAE Silent p.Y976Y 0.19 TCGA-VQ-A8P2-01 17 36455378 36455378 G T MRPL45 Missense_Mutation p.K102N 0.09 deleterious(0.05) possibly_damaging(0.675) TCGA-VQ-A8P2-01 17 36484763 36484763 G A GPR179 Silent p.C1563C 0.15 TCGA-VQ-A8P2-01 17 36498885 36498885 T C GPR179 Missense_Mutation p.E263G 0.06 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 17 36499245 36499245 C A GPR179 Missense_Mutation p.R143I 0.17 deleterious(0) possibly_damaging(0.616) TCGA-VQ-A8P2-01 17 3660419 3660419 C A ITGAE Nonsense_Mutation p.E344* 0.12 TCGA-VQ-A8P2-01 17 37187644 37187645 - G CTD-2206N4.2 5'Flank 0.31 TCGA-VQ-A8P2-01 17 37187917 37187917 G T CTD-2206N4.2 5'Flank 0.21 TCGA-VQ-A8P2-01 17 3724551 3724551 C T C17orf85 Missense_Mutation p.R331Q 0.37 deleterious(0.01) benign(0.113) TCGA-VQ-A8P2-01 17 37371444 37371444 C T STAC2 Missense_Mutation p.R209H 0.39 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 17 37564071 37564071 C T MED1 Missense_Mutation p.G1468D 0.31 deleterious_low_confidence(0.03) unknown(0) TCGA-VQ-A8P2-01 17 37565058 37565058 C T MED1 Missense_Mutation p.G1139E 0.43 deleterious_low_confidence(0) unknown(0) TCGA-VQ-A8P2-01 17 37814712 37814712 G A STARD3 Missense_Mutation p.A162T 0.26 deleterious(0) possibly_damaging(0.816) TCGA-VQ-A8P2-01 17 37901173 37901173 G A GRB7 Missense_Mutation p.R339Q 0.47 deleterious(0.05) benign(0.243) TCGA-VQ-A8P2-01 17 3801070 3801070 C A P2RX1 3'UTR 0.35 TCGA-VQ-A8P2-01 17 38033036 38033036 A C ZPBP2 Missense_Mutation p.N331H 0.29 deleterious_low_confidence(0.01) benign(0.446) TCGA-VQ-A8P2-01 17 38079452 38079452 G A ORMDL3 Missense_Mutation p.A80V 0.42 tolerated(0.09) benign(0.386) TCGA-VQ-A8P2-01 17 38079465 38079465 C A ORMDL3 Missense_Mutation p.D76Y 0.37 deleterious(0) probably_damaging(0.981) TCGA-VQ-A8P2-01 17 38175772 38175772 G A MED24 3'UTR 0.42 TCGA-VQ-A8P2-01 17 38185222 38185222 C A MED24 Splice_Site p.X423_splice 0.09 TCGA-VQ-A8P2-01 17 38251956 38251956 C T NR1D1 Missense_Mutation p.R330H 0.31 tolerated(0.36) benign(0.002) TCGA-VQ-A8P2-01 17 3850692 3850692 A G ATP2A3 Missense_Mutation p.V363A 0.45 deleterious(0.03) probably_damaging(0.999) TCGA-VQ-A8P2-01 17 3851028 3851028 C T ATP2A3 Missense_Mutation p.R251H 0.45 deleterious(0.01) benign(0.003) TCGA-VQ-A8P2-01 17 38511645 38511645 T C RARA Silent p.I381I 0.29 TCGA-VQ-A8P2-01 17 38818181 38818181 G T KRT222 Missense_Mutation p.S71Y 0.08 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8P2-01 17 38933952 38933952 G A KRT27 Silent p.T335T 0.33 TCGA-VQ-A8P2-01 17 39119922 39119922 G A KRT39 Missense_Mutation p.S222F 0.07 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 17 3924456 3924456 C T ZZEF1 Silent p.E2457E 0.39 TCGA-VQ-A8P2-01 17 3937415 3937415 G T ZZEF1 Missense_Mutation p.L2160I 0.06 deleterious(0.01) possibly_damaging(0.905) TCGA-VQ-A8P2-01 17 39525801 39525801 C T KRT33B Missense_Mutation p.A68T 0.32 deleterious(0.01) probably_damaging(0.946) TCGA-VQ-A8P2-01 17 39680429 39680429 C T KRT19 Missense_Mutation p.G305D 0.12 deleterious(0.04) benign(0.2) TCGA-VQ-A8P2-01 17 3977461 3977461 G A ZZEF1 Missense_Mutation p.A1223V 0.41 deleterious(0.04) possibly_damaging(0.887) TCGA-VQ-A8P2-01 17 3981220 3981220 C T ZZEF1 Silent p.T982T 0.48 TCGA-VQ-A8P2-01 17 39921023 39921023 C T JUP Missense_Mutation p.R367H 0.09 deleterious(0) probably_damaging(0.994) TCGA-VQ-A8P2-01 17 39959546 39959546 G A LEPREL4 Silent p.A428A 0.42 TCGA-VQ-A8P2-01 17 39963105 39963105 G A LEPREL4 Silent p.T363T 0.18 TCGA-VQ-A8P2-01 17 40001629 40001629 C T KLHL10 Silent p.D312D 0.11 TCGA-VQ-A8P2-01 17 40010418 40010418 C A KLHL11 Missense_Mutation p.K567N 0.37 deleterious(0.05) possibly_damaging(0.572) TCGA-VQ-A8P2-01 17 40021246 40021246 G A KLHL11 Silent p.L126L 0.38 TCGA-VQ-A8P2-01 17 40265622 40265622 C T KAT2A 3'UTR 0.38 TCGA-VQ-A8P2-01 17 40368069 40368069 G A STAT5B Missense_Mutation p.T479M 0.36 deleterious(0.03) benign(0.083) TCGA-VQ-A8P2-01 17 40447790 40447790 C T STAT5A Nonsense_Mutation p.Q177* 0.38 TCGA-VQ-A8P2-01 17 40489554 40489554 C A STAT3 Missense_Mutation p.Q232H 0.44 tolerated(0.54) benign(0.287) TCGA-VQ-A8P2-01 17 40556893 40556893 G A PTRF Missense_Mutation p.R329C 0.38 deleterious(0) probably_damaging(0.988) TCGA-VQ-A8P2-01 17 40690719 40690719 G A NAGLU Missense_Mutation p.G237D 0.35 deleterious(0) possibly_damaging(0.789) TCGA-VQ-A8P2-01 17 40733917 40733917 C T FAM134C Missense_Mutation p.D439N 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A8P2-01 17 40764502 40764502 C T TUBG1 Missense_Mutation p.L153F 0.08 tolerated(0.07) benign(0.041) TCGA-VQ-A8P2-01 17 4076678 4076678 G A ANKFY1 Silent p.C1037C 0.47 TCGA-VQ-A8P2-01 17 40822665 40822665 G T PLEKHH3 Missense_Mutation p.L494M 0.10 deleterious(0) unknown(0) TCGA-VQ-A8P2-01 17 40843260 40843260 G A CNTNAP1 Missense_Mutation p.S722N 0.31 tolerated(1) benign(0.026) TCGA-VQ-A8P2-01 17 4088158 4088158 C T ANKFY1 Missense_Mutation p.A594T 0.34 tolerated(0.56) benign(0.134) TCGA-VQ-A8P2-01 17 41020614 41020614 G A AOC4P RNA 0.35 TCGA-VQ-A8P2-01 17 41166191 41166191 G A IFI35 Missense_Mutation p.E248K 0.42 tolerated(0.32) possibly_damaging(0.511) TCGA-VQ-A8P2-01 17 41166275 41166275 G T IFI35 Nonsense_Mutation p.G276* 0.12 TCGA-VQ-A8P2-01 17 41226520 41226520 G A BRCA1 Silent p.C1522C 0.21 TCGA-VQ-A8P2-01 17 41571204 41571204 C T DHX8 Missense_Mutation p.R388C 0.10 deleterious(0) benign(0.015) TCGA-VQ-A8P2-01 17 41585189 41585189 C T DHX8 Missense_Mutation p.R708W 0.38 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 17 41909260 41909260 C T MPP3 Silent p.S5S 0.10 TCGA-VQ-A8P2-01 17 41926251 41926251 C T CD300LG Silent p.F123F 0.24 TCGA-VQ-A8P2-01 17 41957265 41957265 G A MPP2 Missense_Mutation p.A413V 0.10 tolerated(0.14) benign(0.428) TCGA-VQ-A8P2-01 17 42160975 42160975 C T HDAC5 Missense_Mutation p.V802M 0.22 deleterious(0) probably_damaging(0.979) TCGA-VQ-A8P2-01 17 42194902 42194902 G T HDAC5 5'UTR 0.10 TCGA-VQ-A8P2-01 17 42239342 42239342 C A C17orf53 3'UTR 0.31 TCGA-VQ-A8P2-01 17 42254934 42254934 G A ASB16 Intron 0.44 TCGA-VQ-A8P2-01 17 42285114 42285114 G A UBTF Nonsense_Mutation p.R660* 0.42 TCGA-VQ-A8P2-01 17 42287710 42287710 G A UBTF Silent p.I497I 0.40 TCGA-VQ-A8P2-01 17 42290592 42290592 C T UBTF Missense_Mutation p.R178Q 0.40 tolerated(0.22) benign(0.234) TCGA-VQ-A8P2-01 17 42295551 42295551 G A UBTF Missense_Mutation p.P16L 0.35 tolerated(0.07) benign(0.04) TCGA-VQ-A8P2-01 17 42427648 42427648 G A GRN Silent p.P134P 0.15 TCGA-VQ-A8P2-01 17 42427920 42427920 C T GRN Silent p.L191L 0.12 TCGA-VQ-A8P2-01 17 42429750 42429750 C T GRN Silent p.G485G 0.50 TCGA-VQ-A8P2-01 17 42466734 42466734 T A ITGA2B Silent p.P36P 0.15 TCGA-VQ-A8P2-01 17 42636125 42636125 G A FZD2 Missense_Mutation p.G357S 0.42 deleterious(0) probably_damaging(0.991) TCGA-VQ-A8P2-01 17 42636154 42636154 G T FZD2 Missense_Mutation p.E366D 0.35 deleterious(0.05) probably_damaging(0.959) TCGA-VQ-A8P2-01 17 42636564 42636564 C T FZD2 Missense_Mutation p.A503V 0.41 tolerated(0.1) benign(0.405) TCGA-VQ-A8P2-01 17 42636661 42636661 G A FZD2 Silent p.S535S 0.58 TCGA-VQ-A8P2-01 17 42745517 42745517 C A C17orf104 Silent p.T746T 0.33 TCGA-VQ-A8P2-01 17 42828230 42828230 C T DBF4B Missense_Mutation p.A486V 0.42 tolerated_low_confidence(0.13) benign(0.011) TCGA-VQ-A8P2-01 17 42882936 42882936 C T GJC1 Missense_Mutation p.V84M 0.27 deleterious(0) possibly_damaging(0.812) TCGA-VQ-A8P2-01 17 42940102 42940102 C T EFTUD2 Missense_Mutation p.R529H 0.22 tolerated(0.21) benign(0.262) TCGA-VQ-A8P2-01 17 42992567 42992567 C T GFAP Silent p.A96A 0.36 TCGA-VQ-A8P2-01 17 43005535 43005535 G A KIF18B Missense_Mutation p.P712L 0.20 tolerated(0.05) probably_damaging(0.966) TCGA-VQ-A8P2-01 17 43176870 43176870 C T NMT1 Nonsense_Mutation p.R328* 0.13 TCGA-VQ-A8P2-01 17 43183073 43183073 C T NMT1 3'UTR 0.31 TCGA-VQ-A8P2-01 17 43220882 43220882 C A ACBD4 Silent p.S300S 0.22 TCGA-VQ-A8P2-01 17 43316380 43316380 G A FMNL1 Missense_Mutation p.R343H 0.45 deleterious(0) unknown(0) TCGA-VQ-A8P2-01 17 43320682 43320682 T A FMNL1 Silent p.I736I 0.12 TCGA-VQ-A8P2-01 17 43343977 43343977 G A SPATA32 5'Flank 0.19 TCGA-VQ-A8P2-01 17 43481399 43481399 G T ARHGAP27 Missense_Mutation p.L174I 0.33 tolerated(0.15) possibly_damaging(0.567) TCGA-VQ-A8P2-01 17 43552855 43552855 G A PLEKHM1 Silent p.L178L 0.36 TCGA-VQ-A8P2-01 17 43912050 43912050 C T CRHR1 Nonsense_Mutation p.R419* 0.50 TCGA-VQ-A8P2-01 17 43922852 43922852 G A SPPL2C Missense_Mutation p.A194T 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-VQ-A8P2-01 17 44061127 44061127 G T MAPT Missense_Mutation p.E319D 0.50 deleterious(0.01) benign(0.313) TCGA-VQ-A8P2-01 17 44109036 44109036 G - KANSL1 Frame_Shift_Del p.L1042Wfs*71 0.30 TCGA-VQ-A8P2-01 17 4451517 4451517 C T MYBBP1A Missense_Mutation p.A549T 0.37 deleterious(0.03) possibly_damaging(0.666) TCGA-VQ-A8P2-01 17 4457519 4457519 C A MYBBP1A Nonsense_Mutation p.E117* 0.44 TCGA-VQ-A8P2-01 17 44847210 44847210 C T WNT3 Missense_Mutation p.R176H 0.26 deleterious(0) possibly_damaging(0.749) TCGA-VQ-A8P2-01 17 44950108 44950108 C T WNT9B Silent p.S101S 0.42 TCGA-VQ-A8P2-01 17 4510768 4510768 C T SMTNL2 Missense_Mutation p.R458C 0.38 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 17 45199936 45199936 C T CDC27 Missense_Mutation p.A762T 0.43 deleterious(0.03) probably_damaging(0.999) TCGA-VQ-A8P2-01 17 45490192 45490192 A G EFCAB13 Missense_Mutation p.I778V 0.32 tolerated(0.34) benign(0.01) TCGA-VQ-A8P2-01 17 45695773 45695773 G A NPEPPS Missense_Mutation p.A785T 0.39 tolerated(0.08) possibly_damaging(0.532) TCGA-VQ-A8P2-01 17 4575190 4575190 G T PELP1 Silent p.P1032P 0.57 TCGA-VQ-A8P2-01 17 45774177 45774177 G A TBKBP1 Missense_Mutation p.R109Q 0.35 tolerated(0.39) benign(0.06) TCGA-VQ-A8P2-01 17 45820534 45820534 G - TBX21 Frame_Shift_Del p.A250Rfs*5 0.08 TCGA-VQ-A8P2-01 17 45888184 45888185 - G OSBPL7 Frame_Shift_Ins p.I586Yfs*9 0.31 TCGA-VQ-A8P2-01 17 45925466 45925466 C T SP6 Silent p.P110P 0.38 TCGA-VQ-A8P2-01 17 46136588 46136588 T C NFE2L1 Missense_Mutation p.V635A 0.28 deleterious(0) possibly_damaging(0.859) TCGA-VQ-A8P2-01 17 46620574 46620574 G T HOXB2 Missense_Mutation p.F309L 0.42 tolerated(0.52) probably_damaging(0.97) TCGA-VQ-A8P2-01 17 46654155 46654155 G A HOXB4 Missense_Mutation p.R229C 0.27 deleterious(0) unknown(0) TCGA-VQ-A8P2-01 17 46669648 46669648 G A HOXB5 Missense_Mutation p.R245W 0.06 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 17 46685443 46685443 G A HOXB7 Nonsense_Mutation p.R139* 0.16 TCGA-VQ-A8P2-01 17 46862465 46862465 C A TTLL6 Missense_Mutation p.E620D 0.45 tolerated(0.12) benign(0.056) TCGA-VQ-A8P2-01 17 4686290 4686290 C T TM4SF5 Silent p.N179N 0.46 TCGA-VQ-A8P2-01 17 4700757 4700757 T C PSMB6 Silent p.T65T 0.41 TCGA-VQ-A8P2-01 17 47246252 47246252 G T B4GALNT2 Silent p.V495V 0.23 TCGA-VQ-A8P2-01 17 4726001 4726001 G A PLD2 Missense_Mutation p.E882K 0.21 tolerated(0.33) benign(0.001) TCGA-VQ-A8P2-01 17 47590175 47590175 C T NGFR Missense_Mutation p.A363V 0.09 deleterious(0) probably_damaging(0.966) TCGA-VQ-A8P2-01 17 47869320 47869320 T C KAT7 Missense_Mutation p.S30P 0.41 tolerated_low_confidence(0.14) benign(0.004) TCGA-VQ-A8P2-01 17 4796590 4796590 C T MINK1 Intron 0.50 TCGA-VQ-A8P2-01 17 4797867 4797867 G A MINK1 Silent p.T952T 0.30 TCGA-VQ-A8P2-01 17 48267715 48267715 G - COL1A1 Frame_Shift_Del p.G809Afs*299 0.31 TCGA-VQ-A8P2-01 17 48437393 48437393 G A XYLT2 Missense_Mutation p.G780D 0.21 tolerated(0.15) benign(0.355) TCGA-VQ-A8P2-01 17 4848019 4848019 G T RNF167 Missense_Mutation p.S254I 0.41 deleterious(0.01) benign(0.135) TCGA-VQ-A8P2-01 17 4848158 4848158 G A RNF167 Silent p.R300R 0.08 TCGA-VQ-A8P2-01 17 4849222 4849222 G T PFN1 Silent p.A132A 0.41 TCGA-VQ-A8P2-01 17 48603309 48603309 C A MYCBPAP Missense_Mutation p.A660D 0.40 tolerated(0.27) benign(0.109) TCGA-VQ-A8P2-01 17 48762176 48762176 T C ABCC3 Missense_Mutation p.F1407S 0.41 deleterious(0) probably_damaging(0.99) TCGA-VQ-A8P2-01 17 48918271 48918271 G A WFIKKN2 Missense_Mutation p.R541H 0.42 tolerated(0.23) possibly_damaging(0.475) TCGA-VQ-A8P2-01 17 49054520 49054520 A C SPAG9 Missense_Mutation p.L1158V 0.41 deleterious(0) probably_damaging(0.984) TCGA-VQ-A8P2-01 17 49249021 49249021 G T NME1-NME2 3'UTR 0.32 TCGA-VQ-A8P2-01 17 4925839 4925839 T C KIF1C Silent p.S821S 0.38 TCGA-VQ-A8P2-01 17 49343563 49343563 G A UTP18 Missense_Mutation p.R159Q 0.43 deleterious(0.03) benign(0.037) TCGA-VQ-A8P2-01 17 4995609 4995609 G T ZFP3 Missense_Mutation p.Q270H 0.33 deleterious(0.03) probably_damaging(0.969) TCGA-VQ-A8P2-01 17 4995776 4995776 G A ZFP3 Missense_Mutation p.R326Q 0.37 tolerated(0.48) benign(0.231) TCGA-VQ-A8P2-01 17 5041479 5041479 C T USP6 Missense_Mutation p.T330I 0.45 deleterious_low_confidence(0.01) possibly_damaging(0.507) TCGA-VQ-A8P2-01 17 530510 530510 C T VPS53 Missense_Mutation p.R293H 0.10 deleterious(0.04) benign(0.3) TCGA-VQ-A8P2-01 17 5347521 5347521 C T DHX33 3'UTR 0.26 TCGA-VQ-A8P2-01 17 5359368 5359368 G A DHX33 Silent p.Y328Y 0.37 TCGA-VQ-A8P2-01 17 5384634 5384634 A - DERL2 Frame_Shift_Del p.F103Lfs*5 0.25 TCGA-VQ-A8P2-01 17 5456870 5456870 C T NLRP1 Silent p.R788R 0.51 TCGA-VQ-A8P2-01 17 5462254 5462254 G A NLRP1 Missense_Mutation p.P588S 0.13 tolerated(0.72) benign(0.002) TCGA-VQ-A8P2-01 17 5462298 5462298 G T NLRP1 Missense_Mutation p.S573Y 0.12 deleterious(0.01) benign(0.411) TCGA-VQ-A8P2-01 17 5485276 5485276 G A NLRP1 Silent p.S185S 0.28 TCGA-VQ-A8P2-01 17 55197688 55197688 C A AKAP1 3'UTR 0.12 TCGA-VQ-A8P2-01 17 55962593 55962594 - G CUEDC1 Frame_Shift_Ins p.E112Gfs*10 0.25 TCGA-VQ-A8P2-01 17 56276556 56276556 G A EPX Missense_Mutation p.V426I 0.32 tolerated(0.71) benign(0.048) TCGA-VQ-A8P2-01 17 56288364 56288364 C T MKS1 Missense_Mutation p.R312Q 0.29 tolerated(0.07) probably_damaging(0.984) TCGA-VQ-A8P2-01 17 56386438 56386438 A T BZRAP1 Missense_Mutation p.L1399I 0.18 tolerated(0.14) benign(0.018) TCGA-VQ-A8P2-01 17 56434871 56434871 G A RNF43 Missense_Mutation p.P756S 0.34 tolerated_low_confidence(0.39) benign(0.011) TCGA-VQ-A8P2-01 17 56440741 56440741 C T RNF43 Nonsense_Mutation p.W159* 0.43 TCGA-VQ-A8P2-01 17 56492807 56492807 C A RNF43 Missense_Mutation p.Q44H 0.49 deleterious(0) probably_damaging(0.988) TCGA-VQ-A8P2-01 17 56569036 56569036 T C MTMR4 Silent p.T1192T 0.43 TCGA-VQ-A8P2-01 17 56621106 56621106 A G C17orf47 Missense_Mutation p.S148P 0.46 deleterious(0.01) possibly_damaging(0.82) TCGA-VQ-A8P2-01 17 56649406 56649406 C T TEX14 Missense_Mutation p.C1244Y 0.14 deleterious(0.04) benign(0.005) TCGA-VQ-A8P2-01 17 57047062 57047062 C T PPM1E Missense_Mutation p.R316W 0.11 deleterious(0) probably_damaging(0.978) TCGA-VQ-A8P2-01 17 57311890 57311890 T C GDPD1 Silent p.F60F 0.41 TCGA-VQ-A8P2-01 17 57651205 57651205 G T DHX40 Missense_Mutation p.K217N 0.10 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8P2-01 17 57656842 57656842 A G DHX40 Silent p.V361V 0.38 TCGA-VQ-A8P2-01 17 57665262 57665262 G A DHX40 Missense_Mutation p.G477D 0.30 deleterious(0) probably_damaging(0.994) TCGA-VQ-A8P2-01 17 58024179 58024179 A - RPS6KB1 3'UTR 0.27 TCGA-VQ-A8P2-01 17 58030461 58030461 A G RNFT1 Silent p.C395C 0.10 TCGA-VQ-A8P2-01 17 58525109 58525109 C T APPBP2 Missense_Mutation p.E531K 0.39 tolerated(0.2) benign(0.025) TCGA-VQ-A8P2-01 17 59067399 59067399 A G BCAS3 Missense_Mutation p.H430R 0.38 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 17 59477552 59477552 G A TBX2 Silent p.A5A 0.53 TCGA-VQ-A8P2-01 17 59482908 59482908 C T TBX2 Missense_Mutation p.P466L 0.50 tolerated(0.19) benign(0.051) TCGA-VQ-A8P2-01 17 59761225 59761225 T C BRIP1 Missense_Mutation p.N1061S 0.39 tolerated_low_confidence(0.18) benign(0.017) TCGA-VQ-A8P2-01 17 59885878 59885878 C T BRIP1 Missense_Mutation p.G290S 0.29 tolerated(0.58) benign(0.08) TCGA-VQ-A8P2-01 17 5991310 5991310 G A WSCD1 Missense_Mutation p.G143D 0.29 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 17 59989371 59989371 C T INTS2 Missense_Mutation p.R245H 0.40 tolerated(0.24) probably_damaging(0.999) TCGA-VQ-A8P2-01 17 60045420 60045420 A - MED13 Frame_Shift_Del p.F1389Lfs*13 0.31 TCGA-VQ-A8P2-01 17 6014097 6014099 GTT - WSCD1 In_Frame_Del p.C340del 0.37 TCGA-VQ-A8P2-01 17 60348786 60348786 G A TBC1D3P2 RNA 0.35 TCGA-VQ-A8P2-01 17 60613586 60613586 C T TLK2 Missense_Mutation p.T140M 0.09 tolerated_low_confidence(0.28) benign(0.397) TCGA-VQ-A8P2-01 17 60765667 60765667 C T MRC2 Silent p.G988G 0.19 TCGA-VQ-A8P2-01 17 60779024 60779024 C T MARCH10 3'UTR 0.41 TCGA-VQ-A8P2-01 17 60813311 60813311 G A MARCH10 Missense_Mutation p.L640F 0.29 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 17 61613293 61613293 G A KCNH6 Silent p.S455S 0.33 TCGA-VQ-A8P2-01 17 61627954 61627954 C A DCAF7 5'UTR 0.40 TCGA-VQ-A8P2-01 17 61685311 61685311 G A TACO1 Silent p.Q281Q 0.09 TCGA-VQ-A8P2-01 17 61781808 61781808 G A STRADA Silent p.T331T 0.38 TCGA-VQ-A8P2-01 17 61895360 61895363 AGAG - DDX42 Frame_Shift_Del p.E808Dfs*143 0.18 TCGA-VQ-A8P2-01 17 61895433 61895433 G A DDX42 Missense_Mutation p.S831N 0.44 tolerated_low_confidence(0.39) benign(0) TCGA-VQ-A8P2-01 17 61902524 61902524 C A FTSJ3 Splice_Site p.X199_splice 0.47 TCGA-VQ-A8P2-01 17 61996155 61996155 C T GH1 5'UTR 0.49 TCGA-VQ-A8P2-01 17 62007234 62007234 C T CD79B Missense_Mutation p.A150T 0.17 tolerated(0.25) possibly_damaging(0.843) TCGA-VQ-A8P2-01 17 62018263 62018263 C A SCN4A Missense_Mutation p.E1793D 0.19 tolerated_low_confidence(0.4) benign(0.013) TCGA-VQ-A8P2-01 17 62018464 62018464 G A SCN4A Silent p.H1726H 0.46 TCGA-VQ-A8P2-01 17 62290154 62290154 G A TEX2 Missense_Mutation p.T475M 0.35 tolerated(0.11) probably_damaging(0.975) TCGA-VQ-A8P2-01 17 62291156 62291156 G A TEX2 Missense_Mutation p.S141L 0.08 tolerated(0.38) benign(0.005) TCGA-VQ-A8P2-01 17 62541847 62541854 AAAAAGGG - SMURF2 3'UTR 0.33 TCGA-VQ-A8P2-01 17 62542423 62542423 T G SMURF2 Missense_Mutation p.Q702P 0.18 tolerated(0.1) probably_damaging(0.916) TCGA-VQ-A8P2-01 17 62818383 62818383 T G RNU7-115P 3'Flank 0.33 TCGA-VQ-A8P2-01 17 63221412 63221412 G A RGS9 Missense_Mutation p.R567H 0.09 tolerated_low_confidence(0.16) benign(0.001) TCGA-VQ-A8P2-01 17 63534306 63534306 C T AXIN2 Intron 0.21 TCGA-VQ-A8P2-01 17 6377765 6377765 C T PITPNM3 Silent p.L415L 0.25 TCGA-VQ-A8P2-01 17 64025301 64025301 T G CEP112 Missense_Mutation p.Q481H 0.13 deleterious(0.01) possibly_damaging(0.904) TCGA-VQ-A8P2-01 17 64683346 64683346 G A PRKCA Missense_Mutation p.R216H 0.41 deleterious(0.04) benign(0.026) TCGA-VQ-A8P2-01 17 64880755 64880755 G A CACNG5 Missense_Mutation p.A183T 0.34 deleterious(0.05) possibly_damaging(0.563) TCGA-VQ-A8P2-01 17 650951 650951 A G GEMIN4 Missense_Mutation p.I111T 0.53 deleterious(0.01) benign(0.068) TCGA-VQ-A8P2-01 17 65103359 65103359 C T HELZ Missense_Mutation p.A1723T 0.36 tolerated_low_confidence(0.1) unknown(0) TCGA-VQ-A8P2-01 17 6547976 6547976 G A MED31 Silent p.Y69Y 0.32 TCGA-VQ-A8P2-01 17 65720225 65720225 C G NOL11 Missense_Mutation p.L194V 0.32 deleterious(0) benign(0.119) TCGA-VQ-A8P2-01 17 6590856 6590856 C T SLC13A5 Missense_Mutation p.A523T 0.37 tolerated(0.41) benign(0.015) TCGA-VQ-A8P2-01 17 65941565 65941565 G A BPTF Missense_Mutation p.M2247I 0.33 benign(0.043) TCGA-VQ-A8P2-01 17 65942075 65942075 C T BPTF Silent p.S2417S 0.17 TCGA-VQ-A8P2-01 17 66040032 66040032 C T KPNA2 Missense_Mutation p.L337F 0.36 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 17 6606385 6606385 G T SLC13A5 Missense_Mutation p.A207D 0.39 deleterious(0.02) probably_damaging(0.936) TCGA-VQ-A8P2-01 17 66250605 66250605 G A AMZ2 Missense_Mutation p.G216D 0.13 tolerated(0.08) probably_damaging(0.939) TCGA-VQ-A8P2-01 17 66270120 66270120 G A SLC16A6 Silent p.A108A 0.18 TCGA-VQ-A8P2-01 17 6674050 6674050 C T XAF1 Missense_Mutation p.A199V 0.08 deleterious(0.03) benign(0.08) TCGA-VQ-A8P2-01 17 66917614 66917614 G A ABCA8 Silent p.Y507Y 0.11 TCGA-VQ-A8P2-01 17 67125767 67125767 A - ABCA6 Frame_Shift_Del p.L306Yfs*7 0.38 TCGA-VQ-A8P2-01 17 67129829 67129830 - T ABCA6 Frame_Shift_Ins p.S249Vfs*2 0.29 TCGA-VQ-A8P2-01 17 67149969 67149969 T C ABCA10 Intron 0.33 TCGA-VQ-A8P2-01 17 67183992 67183992 T C ABCA10 Missense_Mutation p.I720M 0.35 deleterious(0.04) possibly_damaging(0.454) TCGA-VQ-A8P2-01 17 67283805 67283805 G A ABCA5 Missense_Mutation p.R664W 0.34 deleterious(0) probably_damaging(0.92) TCGA-VQ-A8P2-01 17 68128667 68128667 G A KCNJ16 Missense_Mutation p.V147M 0.42 deleterious(0) benign(0.391) TCGA-VQ-A8P2-01 17 68129339 68129339 C T KCNJ16 Nonsense_Mutation p.R371* 0.10 TCGA-VQ-A8P2-01 17 6913303 6913303 C A ALOX12 Missense_Mutation p.A557D 0.24 deleterious(0) possibly_damaging(0.888) TCGA-VQ-A8P2-01 17 6920284 6920284 T C C17orf49 Silent p.I155I 0.10 TCGA-VQ-A8P2-01 17 7106172 7106172 G T DLG4 Intron 0.48 TCGA-VQ-A8P2-01 17 7106799 7106799 C T DLG4 Missense_Mutation p.R193H 0.38 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 17 71228438 71228438 C A FAM104A Missense_Mutation p.G3V 0.41 deleterious_low_confidence(0) unknown(0) TCGA-VQ-A8P2-01 17 71282235 71282235 C T CDC42EP4 Silent p.L135L 0.14 TCGA-VQ-A8P2-01 17 7128343 7128343 G A ACADVL Missense_Mutation p.R655H 0.15 deleterious(0.04) benign(0.381) TCGA-VQ-A8P2-01 17 7130556 7130556 C T DVL2 Missense_Mutation p.V466M 0.32 deleterious(0.01) probably_damaging(0.986) TCGA-VQ-A8P2-01 17 71346791 71346791 G A SDK2 Missense_Mutation p.S1966L 0.32 deleterious(0.02) benign(0.154) TCGA-VQ-A8P2-01 17 7139270 7139270 C T PHF23 Missense_Mutation p.E326K 0.39 deleterious(0.03) possibly_damaging(0.905) TCGA-VQ-A8P2-01 17 7220548 7220548 G A NEURL4 Missense_Mutation p.A1487V 0.11 tolerated(0.55) benign(0.012) TCGA-VQ-A8P2-01 17 7221879 7221879 C - NEURL4 Frame_Shift_Del p.V1267* 0.29 TCGA-VQ-A8P2-01 17 7224689 7224689 G A NEURL4 Silent p.G1063G 0.37 TCGA-VQ-A8P2-01 17 7230196 7230196 G A NEURL4 Missense_Mutation p.S309L 0.47 tolerated(0.12) benign(0.04) TCGA-VQ-A8P2-01 17 72338810 72338810 C T KIF19 Silent p.G91G 0.22 TCGA-VQ-A8P2-01 17 72440040 72440040 C T GPRC5C Missense_Mutation p.H424Y 0.58 deleterious(0.04) probably_damaging(0.974) TCGA-VQ-A8P2-01 17 72736934 72736934 G A RAB37 Missense_Mutation p.G46S 0.40 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 17 72838549 72838549 G A GRIN2C 3'UTR 0.43 TCGA-VQ-A8P2-01 17 72862612 72862612 C T FDXR Missense_Mutation p.V160M 0.15 deleterious(0) probably_damaging(0.982) TCGA-VQ-A8P2-01 17 72943272 72943272 G A OTOP3 Missense_Mutation p.R441H 0.50 tolerated(0.13) benign(0.003) TCGA-VQ-A8P2-01 17 72943357 72943357 C T OTOP3 Silent p.I469I 0.13 TCGA-VQ-A8P2-01 17 73015811 73015811 T G ICT1 Silent p.S80S 0.12 TCGA-VQ-A8P2-01 17 73016470 73016470 C T ICT1 Missense_Mutation p.R116W 0.29 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 17 73049174 73049174 C T KCTD2 Missense_Mutation p.R172W 0.44 deleterious(0) possibly_damaging(0.824) TCGA-VQ-A8P2-01 17 73234274 73234274 G A GGA3 3'UTR 0.29 TCGA-VQ-A8P2-01 17 7324282 7324282 C T SPEM1 Silent p.T96T 0.27 TCGA-VQ-A8P2-01 17 7329688 7329688 C T C17orf74 Silent p.R126R 0.49 TCGA-VQ-A8P2-01 17 7330144 7330144 G A C17orf74 Silent p.S278S 0.42 TCGA-VQ-A8P2-01 17 7330756 7330756 G A C17orf74 Silent p.P482P 0.27 TCGA-VQ-A8P2-01 17 7339556 7339556 G T TMEM102 Missense_Mutation p.E86D 0.45 deleterious(0.01) possibly_damaging(0.538) TCGA-VQ-A8P2-01 17 73491063 73491063 C - KIAA0195 Frame_Shift_Del p.S895Pfs*13 0.27 TCGA-VQ-A8P2-01 17 73565319 73565319 C A LLGL2 Silent p.P498P 0.42 TCGA-VQ-A8P2-01 17 73654396 73654396 C A RECQL5 Missense_Mutation p.K377N 0.09 deleterious(0.01) benign(0.119) TCGA-VQ-A8P2-01 17 7365498 7365498 G A ZBTB4 Missense_Mutation p.P935S 0.25 probably_damaging(0.994) TCGA-VQ-A8P2-01 17 73698584 73698584 C T SAP30BP Nonsense_Mutation p.R141* 0.38 TCGA-VQ-A8P2-01 17 73702636 73702636 G A SAP30BP 3'UTR 0.21 TCGA-VQ-A8P2-01 17 73729697 73729697 C T ITGB4 Silent p.G527G 0.08 TCGA-VQ-A8P2-01 17 73805975 73805975 G A UNK Missense_Mutation p.G80D 0.26 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 17 73816155 73816156 - T UNK Frame_Shift_Ins p.L603Ffs*54 0.10 TCGA-VQ-A8P2-01 17 73818727 73818727 G A UNK Silent p.K669K 0.32 TCGA-VQ-A8P2-01 17 73836904 73836904 C T UNC13D Missense_Mutation p.D208N 0.36 deleterious(0) probably_damaging(0.964) TCGA-VQ-A8P2-01 17 73840376 73840376 A G UNC13D Silent p.L15L 0.65 TCGA-VQ-A8P2-01 17 73897973 73897973 G A MRPL38 Silent p.A137A 0.50 TCGA-VQ-A8P2-01 17 73911207 73911207 A G FBF1 Missense_Mutation p.V825A 0.45 tolerated(0.35) benign(0.057) TCGA-VQ-A8P2-01 17 73947535 73947535 G A ACOX1 Silent p.N356N 0.49 TCGA-VQ-A8P2-01 17 7399846 7399846 A - POLR2A Frame_Shift_Del p.N152Tfs*24 0.09 TCGA-VQ-A8P2-01 17 74003431 74003431 C T EVPL Missense_Mutation p.R1952H 0.18 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 17 74003731 74003731 G A EVPL Missense_Mutation p.P1852L 0.45 deleterious(0.02) probably_damaging(1) TCGA-VQ-A8P2-01 17 7401440 7401440 G A POLR2A Missense_Mutation p.A416T 0.40 probably_damaging(0.999) TCGA-VQ-A8P2-01 17 74073073 74073073 C T GALR2 Missense_Mutation p.A242V 0.28 tolerated(0.47) possibly_damaging(0.896) TCGA-VQ-A8P2-01 17 74080636 74080636 C T EXOC7 Missense_Mutation p.A631T 0.48 tolerated(1) benign(0.001) TCGA-VQ-A8P2-01 17 74080649 74080649 C T EXOC7 Silent p.V626V 0.26 TCGA-VQ-A8P2-01 17 7417008 7417008 C T POLR2A Missense_Mutation p.P1809S 0.35 unknown(0) TCGA-VQ-A8P2-01 17 74266348 74266348 G A UBALD2 Missense_Mutation p.R86H 0.32 tolerated(0.11) benign(0.102) TCGA-VQ-A8P2-01 17 74287393 74287393 G A QRICH2 Nonsense_Mutation p.R973* 0.10 TCGA-VQ-A8P2-01 17 74288687 74288687 C T QRICH2 Silent p.Q541Q 0.44 TCGA-VQ-A8P2-01 17 74383084 74383084 G A SPHK1 Missense_Mutation p.R277H 0.42 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8P2-01 17 74383457 74383457 A T SPHK1 Missense_Mutation p.E401D 0.43 tolerated(1) benign(0.001) TCGA-VQ-A8P2-01 17 74383723 74383723 A G SPHK1 3'UTR 0.42 TCGA-VQ-A8P2-01 17 74387869 74387869 G A UBE2O Missense_Mutation p.S1059F 0.29 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 17 7473799 7473799 C T SENP3 Silent p.R489R 0.39 TCGA-VQ-A8P2-01 17 74878316 74878316 G A MGAT5B Missense_Mutation p.A100T 0.55 deleterious(0.01) possibly_damaging(0.69) TCGA-VQ-A8P2-01 17 75212537 75212537 C T SEC14L1 Intron 0.40 TCGA-VQ-A8P2-01 17 7533568 7533568 G T SHBG Missense_Mutation p.Q26H 0.25 tolerated(0.12) benign(0.023) TCGA-VQ-A8P2-01 17 75488727 75488727 G A SEPT9 Missense_Mutation p.G469S 0.39 tolerated(0.06) benign(0.407) TCGA-VQ-A8P2-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.39 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.49 tolerated(0.11) benign(0.308) TCGA-VQ-A8P2-01 17 7579902 7579902 G A TP53 Missense_Mutation p.P4L 0.41 tolerated(0.06) benign(0.004) TCGA-VQ-A8P2-01 17 7591979 7591979 G A WRAP53 Missense_Mutation p.E5K 0.19 deleterious_low_confidence(0.01) benign(0.411) TCGA-VQ-A8P2-01 17 76116657 76116657 C A TMC6 Intron 0.15 TCGA-VQ-A8P2-01 17 76128486 76128486 C T TMC8 Silent p.F115F 0.40 TCGA-VQ-A8P2-01 17 7636490 7636490 C T DNAH2 Missense_Mutation p.T162M 0.39 probably_damaging(0.915) TCGA-VQ-A8P2-01 17 7646391 7646391 G A DNAH2 Missense_Mutation p.R612Q 0.10 benign(0.015) TCGA-VQ-A8P2-01 17 76464872 76464872 G T DNAH17 Missense_Mutation p.L2855M 0.34 probably_damaging(0.994) TCGA-VQ-A8P2-01 17 76488793 76488793 C T DNAH17 Missense_Mutation p.V2141M 0.33 benign(0.063) TCGA-VQ-A8P2-01 17 76539984 76539984 G A DNAH17 Silent p.Y829Y 0.37 TCGA-VQ-A8P2-01 17 7661926 7661926 C T DNAH2 Missense_Mutation p.A722V 0.50 benign(0.089) TCGA-VQ-A8P2-01 17 76676357 76676357 C T CYTH1 Missense_Mutation p.G345R 0.28 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 17 7668850 7668850 G A DNAH2 Missense_Mutation p.A1160T 0.31 benign(0.003) TCGA-VQ-A8P2-01 17 76803593 76803593 C T USP36 Silent p.S511S 0.11 TCGA-VQ-A8P2-01 17 76831481 76831481 C T USP36 Missense_Mutation p.R119H 0.31 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 17 76968694 76968694 C T LGALS3BP Missense_Mutation p.G241D 0.31 tolerated(0.67) benign(0.003) TCGA-VQ-A8P2-01 17 76993661 76993661 A G CANT1 Missense_Mutation p.M15T 0.50 deleterious_low_confidence(0) possibly_damaging(0.641) TCGA-VQ-A8P2-01 17 7701545 7701545 A G DNAH2 Silent p.G2767G 0.48 TCGA-VQ-A8P2-01 17 7726936 7726936 G A DNAH2 Silent p.A3773A 0.50 TCGA-VQ-A8P2-01 17 7727589 7727589 G A DNAH2 Missense_Mutation p.A3877T 0.37 probably_damaging(1) TCGA-VQ-A8P2-01 17 7750576 7750576 C - KDM6B Frame_Shift_Del p.G357Efs*130 0.28 TCGA-VQ-A8P2-01 17 7752126 7752126 C - KDM6B Frame_Shift_Del p.P842Hfs*52 0.36 TCGA-VQ-A8P2-01 17 7760626 7760626 G T LSMD1 Missense_Mutation p.P39H 0.13 deleterious_low_confidence(0) possibly_damaging(0.884) TCGA-VQ-A8P2-01 17 7761524 7761524 G T CYB5D1 Missense_Mutation p.E24D 0.10 tolerated(0.21) possibly_damaging(0.788) TCGA-VQ-A8P2-01 17 77755530 77755530 G A CBX2 Missense_Mutation p.G73D 0.18 deleterious(0) benign(0.04) TCGA-VQ-A8P2-01 17 77757732 77757732 C T CBX2 Missense_Mutation p.R164W 0.11 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8P2-01 17 77769924 77769924 T C CBX8 Splice_Site p.X60_splice 0.08 TCGA-VQ-A8P2-01 17 77808026 77808026 G A CBX4 Missense_Mutation p.P472L 0.17 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8P2-01 17 7796783 7796783 C T CHD3 Missense_Mutation p.S289L 0.31 benign(0.32) TCGA-VQ-A8P2-01 17 78071155 78071155 G A CCDC40 Missense_Mutation p.D1045N 0.47 tolerated(0.08) possibly_damaging(0.457) TCGA-VQ-A8P2-01 17 78081652 78081652 C T GAA Silent p.G304G 0.43 TCGA-VQ-A8P2-01 17 7811330 7811330 C T CHD3 Silent p.G1774G 0.24 TCGA-VQ-A8P2-01 17 78318476 78318476 A G RNF213 Splice_Site p.X2115_splice 0.30 TCGA-VQ-A8P2-01 17 78335554 78335554 G A RNF213 Missense_Mutation p.D3741N 0.14 benign(0.276) TCGA-VQ-A8P2-01 17 78337565 78337565 G A RNF213 Missense_Mutation p.A3909T 0.41 benign(0.007) TCGA-VQ-A8P2-01 17 78350192 78350192 C A RNF213 Missense_Mutation p.S4426Y 0.11 benign(0.423) TCGA-VQ-A8P2-01 17 7843534 7843534 C A CNTROB Missense_Mutation p.L429M 0.15 tolerated(0.06) probably_damaging(0.992) TCGA-VQ-A8P2-01 17 78865567 78865567 T - RPTOR Frame_Shift_Del p.F678Sfs*9 0.08 TCGA-VQ-A8P2-01 17 7915919 7915919 C T GUCY2D Missense_Mutation p.A703V 0.40 tolerated(0.15) possibly_damaging(0.813) TCGA-VQ-A8P2-01 17 79164854 79164854 G A AZI1 Silent p.A932A 0.14 TCGA-VQ-A8P2-01 17 79167878 79167878 C T AZI1 Silent p.V723V 0.33 TCGA-VQ-A8P2-01 17 7918200 7918200 C T GUCY2D Missense_Mutation p.T867M 0.34 tolerated(1) benign(0.002) TCGA-VQ-A8P2-01 17 79409794 79409794 C T RP11-1055B8.7 Silent p.S473S 0.30 TCGA-VQ-A8P2-01 17 7942596 7942596 C T ALOX15B Silent p.L41L 0.12 TCGA-VQ-A8P2-01 17 7948950 7948950 G T ALOX15B Missense_Mutation p.E382D 0.31 deleterious(0) probably_damaging(0.991) TCGA-VQ-A8P2-01 17 79667552 79667552 G A HGS Silent p.A646A 0.45 TCGA-VQ-A8P2-01 17 79684484 79684486 ACA - SLC25A10 In_Frame_Del p.N198del 0.37 TCGA-VQ-A8P2-01 17 79686863 79686863 C T SLC25A10 Silent p.G245G 0.33 TCGA-VQ-A8P2-01 17 7976208 7976208 C A ALOX12B Nonsense_Mutation p.E663* 0.22 TCGA-VQ-A8P2-01 17 79801807 79801807 C T P4HB 3'UTR 0.31 TCGA-VQ-A8P2-01 17 79863609 79863609 G A PCYT2 Silent p.Y298Y 0.19 TCGA-VQ-A8P2-01 17 79872218 79872218 C A SIRT7 Missense_Mutation p.E256D 0.37 tolerated(0.27) benign(0.003) TCGA-VQ-A8P2-01 17 79873536 79873536 G A SIRT7 Missense_Mutation p.R120W 0.24 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8P2-01 17 79991663 79991663 G A RAC3 Silent p.P179P 0.43 TCGA-VQ-A8P2-01 17 80006935 80006935 C T RFNG Missense_Mutation p.G296S 0.41 tolerated(0.23) benign(0.05) TCGA-VQ-A8P2-01 17 80195403 80195403 G A SLC16A3 Missense_Mutation p.A253T 0.09 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 17 80196919 80196919 T C SLC16A3 3'UTR 0.38 TCGA-VQ-A8P2-01 17 80210318 80210318 C T CSNK1D Missense_Mutation p.G243D 0.14 deleterious_low_confidence(0) possibly_damaging(0.787) TCGA-VQ-A8P2-01 17 80393721 80393721 C T HEXDC Nonsense_Mutation p.R202* 0.30 TCGA-VQ-A8P2-01 17 80400484 80400484 C T HEXDC 3'UTR 0.28 TCGA-VQ-A8P2-01 17 80404567 80404567 G T C17orf62 Missense_Mutation p.L45M 0.08 tolerated(0.07) benign(0.063) TCGA-VQ-A8P2-01 17 80573855 80573855 C A WDR45B Missense_Mutation p.K325N 0.09 tolerated(0.16) benign(0.11) TCGA-VQ-A8P2-01 17 80789206 80789206 G A ZNF750 Silent p.V375V 0.42 TCGA-VQ-A8P2-01 17 80790229 80790229 G A ZNF750 Silent p.C34C 0.28 TCGA-VQ-A8P2-01 17 81006669 81006669 T A B3GNTL1 Intron 0.22 TCGA-VQ-A8P2-01 17 81052110 81052110 G A METRNL Silent p.P242P 0.53 TCGA-VQ-A8P2-01 17 8110920 8110920 C T AURKB Missense_Mutation p.E59K 0.16 tolerated(0.15) benign(0.002) TCGA-VQ-A8P2-01 17 8131929 8131929 C T CTC1 Missense_Mutation p.E1136K 0.38 deleterious(0.04) benign(0.024) TCGA-VQ-A8P2-01 17 8161141 8161141 G A PFAS Nonsense_Mutation p.W364* 0.41 TCGA-VQ-A8P2-01 17 8172463 8172463 C T PFAS Missense_Mutation p.R1300W 0.10 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 17 8192690 8192690 G A RANGRF Nonsense_Mutation p.W103* 0.37 TCGA-VQ-A8P2-01 17 8218772 8218772 G T ARHGEF15 Missense_Mutation p.R434L 0.28 deleterious(0.04) probably_damaging(0.997) TCGA-VQ-A8P2-01 17 8221964 8221964 G A ARHGEF15 Missense_Mutation p.R619H 0.39 tolerated(0.15) probably_damaging(0.924) TCGA-VQ-A8P2-01 17 8381703 8381703 T C MYH10 Missense_Mutation p.M1887V 0.36 benign(0.034) TCGA-VQ-A8P2-01 17 8707416 8707416 C A PIK3R6 Missense_Mutation p.R683M 0.41 deleterious(0) possibly_damaging(0.9) TCGA-VQ-A8P2-01 17 9066163 9066163 G A NTN1 Missense_Mutation p.R351H 0.33 deleterious(0) possibly_damaging(0.885) TCGA-VQ-A8P2-01 17 953389 953389 G A ABR Silent p.S564S 0.33 TCGA-VQ-A8P2-01 17 9546427 9546427 G A WDR16 Missense_Mutation p.R592H 0.10 deleterious(0.01) benign(0.047) TCGA-VQ-A8P2-01 17 9792733 9792733 G A GLP2R Missense_Mutation p.R458H 0.41 tolerated(0.81) benign(0.002) TCGA-VQ-A8P2-01 17 9850223 9850223 G A GAS7 Silent p.C201C 0.17 TCGA-VQ-A8P2-01 18 10696473 10696473 C T PIEZO2 Missense_Mutation p.A2185T 0.33 deleterious(0.01) probably_damaging(0.97) TCGA-VQ-A8P2-01 18 11689846 11689846 T C GNAL Missense_Mutation p.V95A 0.60 tolerated(0.75) benign(0) TCGA-VQ-A8P2-01 18 12360007 12360007 C T AFG3L2 Missense_Mutation p.R224Q 0.37 deleterious(0.01) possibly_damaging(0.879) TCGA-VQ-A8P2-01 18 12367331 12367331 C T AFG3L2 Missense_Mutation p.G115S 0.38 tolerated(0.21) benign(0.023) TCGA-VQ-A8P2-01 18 12678170 12678170 C T CEP76 Missense_Mutation p.A521T 0.44 tolerated(0.36) benign(0.012) TCGA-VQ-A8P2-01 18 12701114 12701114 T C CEP76 Splice_Site p.X22_splice 0.13 TCGA-VQ-A8P2-01 18 13099511 13099511 C A CEP192 Silent p.S2198S 0.21 TCGA-VQ-A8P2-01 18 13666669 13666669 G T FAM210A Missense_Mutation p.S210Y 0.41 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 18 14105379 14105379 C T ZNF519 Missense_Mutation p.R387K 0.37 tolerated(0.33) benign(0.004) TCGA-VQ-A8P2-01 18 14478137 14478137 C T CXADRP3 RNA 0.55 TCGA-VQ-A8P2-01 18 18533607 18533607 C T ROCK1 Silent p.T1331T 0.38 TCGA-VQ-A8P2-01 18 18533679 18533679 T - ROCK1 Frame_Shift_Del p.K1307Nfs*3 0.38 TCGA-VQ-A8P2-01 18 19110434 19110434 C T ESCO1 Missense_Mutation p.G798D 0.54 deleterious(0.01) possibly_damaging(0.753) TCGA-VQ-A8P2-01 18 19153339 19153339 A T ESCO1 Missense_Mutation p.I489K 0.35 deleterious(0) possibly_damaging(0.478) TCGA-VQ-A8P2-01 18 19154690 19154691 - T ESCO1 Frame_Shift_Ins p.S39Ifs*12 0.40 TCGA-VQ-A8P2-01 18 196658 196658 C T USP14 Missense_Mutation p.S162F 0.30 deleterious(0.04) possibly_damaging(0.482) TCGA-VQ-A8P2-01 18 19761506 19761506 C T GATA6 Silent p.C465C 0.10 TCGA-VQ-A8P2-01 18 21095836 21095836 G A C18orf8 Missense_Mutation p.R142Q 0.17 tolerated(0.07) benign(0.006) TCGA-VQ-A8P2-01 18 21113432 21113432 G T NPC1 Missense_Mutation p.A1214D 0.42 deleterious(0) probably_damaging(0.976) TCGA-VQ-A8P2-01 18 21116680 21116680 T - NPC1 Frame_Shift_Del p.T1068Pfs*25 0.25 TCGA-VQ-A8P2-01 18 21119740 21119740 G A NPC1 Intron 0.12 TCGA-VQ-A8P2-01 18 21136259 21136259 G A NPC1 Missense_Mutation p.S425L 0.39 tolerated(0.06) benign(0.409) TCGA-VQ-A8P2-01 18 21327980 21327980 C T LAMA3 Missense_Mutation p.S174F 0.35 probably_damaging(1) TCGA-VQ-A8P2-01 18 21483077 21483077 G T LAMA3 Missense_Mutation p.E2102D 0.11 benign(0.004) TCGA-VQ-A8P2-01 18 21484627 21484627 G T LAMA3 Missense_Mutation p.R2195M 0.26 possibly_damaging(0.615) TCGA-VQ-A8P2-01 18 21494510 21494510 G A LAMA3 Missense_Mutation p.R2489Q 0.32 benign(0.392) TCGA-VQ-A8P2-01 18 21511086 21511086 G T LAMA3 Missense_Mutation p.G2833C 0.08 possibly_damaging(0.706) TCGA-VQ-A8P2-01 18 21526208 21526208 C T LAMA3 Missense_Mutation p.A3104V 0.34 benign(0.072) TCGA-VQ-A8P2-01 18 21703856 21703856 G A TTC39C Silent p.Q415Q 0.42 TCGA-VQ-A8P2-01 18 21708914 21708914 C T TTC39C Silent p.H495H 0.30 TCGA-VQ-A8P2-01 18 21723077 21723077 A G CABYR 5'UTR 0.44 TCGA-VQ-A8P2-01 18 21757991 21757991 G T OSBPL1A Silent p.T693T 0.38 TCGA-VQ-A8P2-01 18 21957414 21957414 C A OSBPL1A Missense_Mutation p.M28I 0.11 tolerated(0.18) benign(0.01) TCGA-VQ-A8P2-01 18 23713952 23713952 C T PSMA8 Missense_Mutation p.A8V 0.13 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 18 25589714 25589714 C T CDH2 Silent p.K223K 0.37 TCGA-VQ-A8P2-01 18 25616541 25616541 C A CDH2 Intron 0.47 TCGA-VQ-A8P2-01 18 2578058 2578058 C A NDC80 Missense_Mutation p.L132I 0.11 tolerated(1) benign(0.078) TCGA-VQ-A8P2-01 18 28576822 28576822 C T DSC3 Missense_Mutation p.E810K 0.11 tolerated(0.36) possibly_damaging(0.869) TCGA-VQ-A8P2-01 18 28669484 28669484 C T DSC2 Missense_Mutation p.R183Q 0.09 tolerated(0.1) benign(0.012) TCGA-VQ-A8P2-01 18 28906876 28906876 C T DSG1 Missense_Mutation p.H42Y 0.14 deleterious(0.04) benign(0.006) TCGA-VQ-A8P2-01 18 28934598 28934598 C T DSG1 Silent p.T813T 0.39 TCGA-VQ-A8P2-01 18 28986170 28986170 C T DSG4 Silent p.C589C 0.11 TCGA-VQ-A8P2-01 18 29340709 29340709 G A SLC25A52 5'UTR 0.32 TCGA-VQ-A8P2-01 18 2940639 2940639 T C LPIN2 Missense_Mutation p.Y221C 0.44 deleterious(0.02) probably_damaging(0.98) TCGA-VQ-A8P2-01 18 29867092 29867092 C T GAREM Missense_Mutation p.A490T 0.42 tolerated(0.13) benign(0.001) TCGA-VQ-A8P2-01 18 3094283 3094283 A G MYOM1 Missense_Mutation p.L1250S 0.18 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 18 3102547 3102547 G T MYOM1 Missense_Mutation p.S1167Y 0.28 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 18 3215031 3215031 G A MYOM1 Missense_Mutation p.A64V 0.44 tolerated_low_confidence(0.28) benign(0.085) TCGA-VQ-A8P2-01 18 32431840 32431840 G A DTNA Missense_Mutation p.D407N 0.10 tolerated(0.05) possibly_damaging(0.867) TCGA-VQ-A8P2-01 18 32681986 32681986 A G MAPRE2 Missense_Mutation p.Y158C 0.44 deleterious(0) possibly_damaging(0.75) TCGA-VQ-A8P2-01 18 32822536 32822536 G T ZNF397 Missense_Mutation p.E34D 0.14 deleterious(0.03) benign(0.013) TCGA-VQ-A8P2-01 18 33077871 33077871 T - INO80C 5'UTR 0.28 TCGA-VQ-A8P2-01 18 33706351 33706351 G A SLC39A6 Missense_Mutation p.T207I 0.36 tolerated(0.19) benign(0.003) TCGA-VQ-A8P2-01 18 33713215 33713215 T C ELP2 Silent p.V51V 0.38 TCGA-VQ-A8P2-01 18 33780189 33780189 G A MOCOS Silent p.A281A 0.36 TCGA-VQ-A8P2-01 18 34205516 34205516 C - FHOD3 Frame_Shift_Del p.S336Vfs*138 0.41 TCGA-VQ-A8P2-01 18 3451994 3451994 G A TGIF1 Missense_Mutation p.S6N 0.53 unknown(0) TCGA-VQ-A8P2-01 18 42530762 42530762 C T SETBP1 Missense_Mutation p.A486V 0.29 tolerated(0.26) benign(0.01) TCGA-VQ-A8P2-01 18 42532328 42532328 G A SETBP1 Missense_Mutation p.R1008H 0.12 deleterious(0.01) benign(0.168) TCGA-VQ-A8P2-01 18 43253781 43253781 C T SLC14A2 Silent p.C837C 0.28 TCGA-VQ-A8P2-01 18 43529468 43529468 C A EPG5 Missense_Mutation p.W493C 0.46 deleterious(0) probably_damaging(0.99) TCGA-VQ-A8P2-01 18 43698274 43698274 G A HAUS1 Silent p.S111S 0.10 TCGA-VQ-A8P2-01 18 43796271 43796271 G A C18orf25 Missense_Mutation p.R142Q 0.43 probably_damaging(0.996) TCGA-VQ-A8P2-01 18 44013374 44013374 G T RNF165 Missense_Mutation p.G95C 0.32 deleterious(0.01) possibly_damaging(0.807) TCGA-VQ-A8P2-01 18 44260149 44260149 C T ST8SIA5 Silent p.S329S 0.27 TCGA-VQ-A8P2-01 18 44424018 44424018 G T PIAS2 Missense_Mutation p.P347H 0.25 deleterious(0) possibly_damaging(0.884) TCGA-VQ-A8P2-01 18 44560164 44560164 G A TCEB3B Missense_Mutation p.A491V 0.14 tolerated(0.07) probably_damaging(0.989) TCGA-VQ-A8P2-01 18 46163033 46163033 C T CTIF Nonsense_Mutation p.R77* 0.25 TCGA-VQ-A8P2-01 18 46163042 46163043 - C CTIF Frame_Shift_Ins p.Q83Tfs*78 0.27 TCGA-VQ-A8P2-01 18 46956696 46956696 C T DYM Silent p.T23T 0.37 TCGA-VQ-A8P2-01 18 47322142 47322142 T C ACAA2 Missense_Mutation p.D141G 0.35 tolerated(0.34) benign(0.012) TCGA-VQ-A8P2-01 18 47322167 47322167 G A ACAA2 Missense_Mutation p.R133C 0.52 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 18 47363126 47363126 G A MYO5B Silent p.D1756D 0.12 TCGA-VQ-A8P2-01 18 47796057 47796057 G A MBD1 Missense_Mutation p.P637L 0.27 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 18 47799242 47799242 G A MBD1 Silent p.A556A 0.43 TCGA-VQ-A8P2-01 18 47799994 47799994 G A MBD1 Silent p.G462G 0.44 TCGA-VQ-A8P2-01 18 47812562 47812562 G A CXXC1 Missense_Mutation p.R97W 0.17 deleterious(0.01) possibly_damaging(0.733) TCGA-VQ-A8P2-01 18 48241548 48241548 G A MAPK4 Missense_Mutation p.G216S 0.10 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8P2-01 18 48510724 48510724 C T ELAC1 Missense_Mutation p.A139V 0.27 tolerated(0.4) benign(0.001) TCGA-VQ-A8P2-01 18 50278553 50278553 G T DCC Missense_Mutation p.W74L 0.27 deleterious(0) possibly_damaging(0.833) TCGA-VQ-A8P2-01 18 50734115 50734115 C T DCC Nonsense_Mutation p.R597* 0.39 TCGA-VQ-A8P2-01 18 51820776 51820776 A - POLI Frame_Shift_Del p.K722Rfs*38 0.35 TCGA-VQ-A8P2-01 18 52571554 52571554 G A CCDC68 3'UTR 0.33 TCGA-VQ-A8P2-01 18 52899781 52899781 G A TCF4 Silent p.D638D 0.44 TCGA-VQ-A8P2-01 18 5291128 5291128 G A ZBTB14 Missense_Mutation p.P360L 0.44 tolerated(0.21) probably_damaging(0.999) TCGA-VQ-A8P2-01 18 5291940 5291940 G A ZBTB14 Silent p.V89V 0.46 TCGA-VQ-A8P2-01 18 5397122 5397122 G A EPB41L3 Nonsense_Mutation p.R926* 0.12 TCGA-VQ-A8P2-01 18 55103234 55103234 G T ONECUT2 Missense_Mutation p.A96S 0.31 tolerated_low_confidence(0.74) benign(0.055) TCGA-VQ-A8P2-01 18 55338813 55338813 C G ATP8B1 Splice_Site p.X607_splice 0.37 TCGA-VQ-A8P2-01 18 55351309 55351311 AAG - ATP8B1 In_Frame_Del p.F529del 0.23 TCGA-VQ-A8P2-01 18 56184205 56184205 C T ALPK2 Missense_Mutation p.A1959T 0.22 deleterious(0.02) possibly_damaging(0.811) TCGA-VQ-A8P2-01 18 56587431 56587431 C T ZNF532 Missense_Mutation p.R638W 0.42 deleterious(0.05) benign(0.052) TCGA-VQ-A8P2-01 18 56620751 56620751 C T ZNF532 Missense_Mutation p.S957F 0.33 tolerated(0.1) possibly_damaging(0.759) TCGA-VQ-A8P2-01 18 57103341 57103341 A G CCBE1 Silent p.L340L 0.36 TCGA-VQ-A8P2-01 18 57134048 57134048 C T CCBE1 Missense_Mutation p.C159Y 0.42 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 18 5890416 5890416 C A TMEM200C Silent p.S549S 0.32 TCGA-VQ-A8P2-01 18 5891537 5891537 C T TMEM200C Missense_Mutation p.G176S 0.33 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 18 5891844 5891844 G T TMEM200C Silent p.G73G 0.40 TCGA-VQ-A8P2-01 18 5892000 5892001 - G TMEM200C Frame_Shift_Ins p.S22Kfs*66 0.33 TCGA-VQ-A8P2-01 18 59203806 59203806 C T CDH20 Missense_Mutation p.P451L 0.40 tolerated(0.33) benign(0.171) TCGA-VQ-A8P2-01 18 60242629 60242629 G A ZCCHC2 Silent p.G1105G 0.28 TCGA-VQ-A8P2-01 18 60642665 60642665 C T PHLPP1 Missense_Mutation p.A1264V 0.34 deleterious(0) possibly_damaging(0.854) TCGA-VQ-A8P2-01 18 61058139 61058139 C T VPS4B 3'UTR 0.46 TCGA-VQ-A8P2-01 18 61078802 61078802 C A VPS4B Missense_Mutation p.D13Y 0.33 deleterious(0.02) possibly_damaging(0.879) TCGA-VQ-A8P2-01 18 61322930 61322930 G T SERPINB3 Silent p.T378T 0.11 TCGA-VQ-A8P2-01 18 61562522 61562522 G T SERPINB2 Missense_Mutation p.A65S 0.10 tolerated(0.75) benign(0.011) TCGA-VQ-A8P2-01 18 64172526 64172527 - A CDH19 Frame_Shift_Ins p.L614Ffs*16 0.40 TCGA-VQ-A8P2-01 18 64239426 64239426 G T CDH19 Missense_Mutation p.L6M 0.39 tolerated(0.05) possibly_damaging(0.448) TCGA-VQ-A8P2-01 18 65178120 65178120 C A DSEL 3'UTR 0.36 TCGA-VQ-A8P2-01 18 65180250 65180250 C A DSEL Missense_Mutation p.E542D 0.38 tolerated(0.49) benign(0.137) TCGA-VQ-A8P2-01 18 66377367 66377367 C T TMX3 Nonsense_Mutation p.W52* 0.48 TCGA-VQ-A8P2-01 18 67742742 67742742 C T RTTN Silent p.S1470S 0.39 TCGA-VQ-A8P2-01 18 67872911 67872911 G A RTTN 5'UTR 0.39 TCGA-VQ-A8P2-01 18 6985271 6985271 G A LAMA1 Silent p.A1875A 0.07 TCGA-VQ-A8P2-01 18 6985545 6985545 G T LAMA1 Missense_Mutation p.A1826D 0.31 tolerated(0.73) benign(0.006) TCGA-VQ-A8P2-01 18 7050729 7050729 G T LAMA1 Silent p.S184S 0.41 TCGA-VQ-A8P2-01 18 71825489 71825489 C T TIMM21 Missense_Mutation p.T207M 0.22 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 18 72345662 72345662 G A ZNF407 Missense_Mutation p.R896H 0.46 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 18 72775290 72775290 C T ZNF407 Silent p.G1871G 0.22 TCGA-VQ-A8P2-01 18 72775953 72775953 C T ZNF407 Silent p.A2092A 0.25 TCGA-VQ-A8P2-01 18 72776238 72776238 C T ZNF407 Silent p.S2187S 0.31 TCGA-VQ-A8P2-01 18 72998546 72998546 G A TSHZ1 Missense_Mutation p.R350H 0.60 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 18 74091004 74091004 G A ZNF516 Silent p.G1022G 0.28 TCGA-VQ-A8P2-01 18 74091249 74091249 C T ZNF516 Missense_Mutation p.A941T 0.36 tolerated(1) benign(0.001) TCGA-VQ-A8P2-01 18 74091973 74091973 C T ZNF516 Silent p.A699A 0.35 TCGA-VQ-A8P2-01 18 74153740 74153740 C T ZNF516 Missense_Mutation p.R424Q 0.31 deleterious(0.01) possibly_damaging(0.582) TCGA-VQ-A8P2-01 18 74606980 74606980 G A ZNF236 Missense_Mutation p.E475K 0.38 tolerated(0.26) possibly_damaging(0.781) TCGA-VQ-A8P2-01 18 74649150 74649150 C T ZNF236 Missense_Mutation p.P1543S 0.07 tolerated(0.24) benign(0.005) TCGA-VQ-A8P2-01 18 74701974 74701974 G A MBP Missense_Mutation p.P74S 0.35 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 18 76752225 76752225 C T SALL3 Silent p.P78P 0.53 TCGA-VQ-A8P2-01 18 76753496 76753496 C T SALL3 Missense_Mutation p.S502L 0.30 deleterious(0) probably_damaging(0.963) TCGA-VQ-A8P2-01 18 76754360 76754360 C T SALL3 Missense_Mutation p.A790V 0.23 tolerated(0.27) benign(0.009) TCGA-VQ-A8P2-01 18 77133922 77133922 T C ATP9B Missense_Mutation p.L1032P 0.39 deleterious(0.02) probably_damaging(0.957) TCGA-VQ-A8P2-01 18 77246927 77246927 C T NFATC1 Silent p.Y911Y 0.52 TCGA-VQ-A8P2-01 18 77470369 77470370 - T CTDP1 Frame_Shift_Ins p.S268Ffs*9 0.10 TCGA-VQ-A8P2-01 18 77624152 77624152 G A KCNG2 Missense_Mutation p.R162H 0.27 deleterious(0.05) benign(0.007) TCGA-VQ-A8P2-01 18 77659262 77659262 G A KCNG2 Missense_Mutation p.A283T 0.37 deleterious(0) possibly_damaging(0.807) TCGA-VQ-A8P2-01 18 77894935 77894935 C T ADNP2 Nonsense_Mutation p.Q547* 0.10 TCGA-VQ-A8P2-01 18 77895732 77895732 C T ADNP2 Silent p.V812V 0.13 TCGA-VQ-A8P2-01 18 7949314 7949314 G T PTPRM Missense_Mutation p.G267C 0.12 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 18 8633243 8633243 C T RAB12 Missense_Mutation p.A115V 0.39 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 18 8718624 8718624 G A SOGA2 Missense_Mutation p.R59Q 0.35 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 18 9257792 9257792 G A ANKRD12 Missense_Mutation p.M1509I 0.39 tolerated_low_confidence(0.69) benign(0.001) TCGA-VQ-A8P2-01 18 9258381 9258381 G A ANKRD12 Missense_Mutation p.E1706K 0.70 deleterious_low_confidence(0.01) possibly_damaging(0.501) TCGA-VQ-A8P2-01 18 9513253 9513254 - A RALBP1 Frame_Shift_Ins p.G73Rfs*4 0.31 TCGA-VQ-A8P2-01 18 9588118 9588118 C T PPP4R1 Missense_Mutation p.S185N 0.36 tolerated(0.07) probably_damaging(0.998) TCGA-VQ-A8P2-01 19 10087905 10087905 C T COL5A3 Silent p.A1096A 0.49 TCGA-VQ-A8P2-01 19 10089249 10089249 C T COL5A3 Splice_Site p.X1006_splice 0.33 TCGA-VQ-A8P2-01 19 10097405 10097405 C A COL5A3 Silent p.G725G 0.33 TCGA-VQ-A8P2-01 19 10250913 10250913 C A DNMT1 Missense_Mutation p.E1205D 0.35 tolerated(0.37) benign(0.174) TCGA-VQ-A8P2-01 19 10260529 10260529 C A DNMT1 Missense_Mutation p.R794M 0.12 deleterious(0.01) possibly_damaging(0.804) TCGA-VQ-A8P2-01 19 10335024 10335024 G A S1PR2 Silent p.Y186Y 0.47 TCGA-VQ-A8P2-01 19 10362933 10362933 C T MRPL4 Silent p.L2L 0.27 TCGA-VQ-A8P2-01 19 10370473 10370473 C A MRPL4 Missense_Mutation p.T307N 0.34 tolerated_low_confidence(0.39) benign(0.403) TCGA-VQ-A8P2-01 19 10395107 10395107 G A ICAM1 Silent p.T318T 0.49 TCGA-VQ-A8P2-01 19 10403488 10403488 G A ICAM5 Missense_Mutation p.D388N 0.31 deleterious(0.02) benign(0.04) TCGA-VQ-A8P2-01 19 1044642 1044642 G A ABCA7 Missense_Mutation p.A372T 0.13 tolerated(0.5) benign(0.003) TCGA-VQ-A8P2-01 19 10472524 10472524 G A TYK2 Silent p.L627L 0.40 TCGA-VQ-A8P2-01 19 1049327 1049327 C T ABCA7 Missense_Mutation p.R815C 0.32 tolerated(0.1) benign(0.001) TCGA-VQ-A8P2-01 19 10741990 10741990 C A SLC44A2 Missense_Mutation p.L124M 0.36 tolerated(0.18) benign(0.401) TCGA-VQ-A8P2-01 19 10753051 10753051 C T SLC44A2 Silent p.I646I 0.34 TCGA-VQ-A8P2-01 19 10793227 10793227 G A ILF3 Missense_Mutation p.M465I 0.15 deleterious(0) possibly_damaging(0.491) TCGA-VQ-A8P2-01 19 1090943 1090943 C T POLR2E Silent p.L131L 0.31 TCGA-VQ-A8P2-01 19 10935882 10935882 C T DNM2 Silent p.H681H 0.25 TCGA-VQ-A8P2-01 19 11032484 11032484 C A CARM1 3'UTR 0.35 TCGA-VQ-A8P2-01 19 11034868 11034868 C T YIPF2 Missense_Mutation p.G123D 0.38 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 19 11144482 11144482 G A SMARCA4 Missense_Mutation p.A1272T 0.45 benign(0.001) TCGA-VQ-A8P2-01 19 11169529 11169529 C T SMARCA4 Silent p.C1533C 0.33 TCGA-VQ-A8P2-01 19 11231113 11231113 G A LDLR Silent p.P685P 0.14 TCGA-VQ-A8P2-01 19 11285269 11285269 C T KANK2 Missense_Mutation p.A658T 0.67 deleterious(0.02) probably_damaging(0.998) TCGA-VQ-A8P2-01 19 11304256 11304256 G - KANK2 Frame_Shift_Del p.P167Rfs*40 0.39 TCGA-VQ-A8P2-01 19 11323962 11323962 C T DOCK6 Missense_Mutation p.D1461N 0.38 deleterious(0.03) possibly_damaging(0.611) TCGA-VQ-A8P2-01 19 11548725 11548725 C A PRKCSH Missense_Mutation p.F75L 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A8P2-01 19 11565418 11565418 C T ELAVL3 Missense_Mutation p.A343T 0.35 tolerated(0.28) possibly_damaging(0.517) TCGA-VQ-A8P2-01 19 11597871 11597871 G A ZNF653 Missense_Mutation p.A425V 0.30 tolerated(0.39) benign(0.003) TCGA-VQ-A8P2-01 19 11833812 11833812 G A ZNF823 Silent p.L179L 0.16 TCGA-VQ-A8P2-01 19 11891643 11891643 C T ZNF441 Missense_Mutation p.P335L 0.44 tolerated(0.06) possibly_damaging(0.791) TCGA-VQ-A8P2-01 19 11979351 11979351 A T ZNF439 Silent p.T489T 0.47 TCGA-VQ-A8P2-01 19 12155836 12155836 G A ZNF878 Missense_Mutation p.S127F 0.51 tolerated(0.71) benign(0.004) TCGA-VQ-A8P2-01 19 12187525 12187525 C T ZNF844 Silent p.N530N 0.46 TCGA-VQ-A8P2-01 19 1230904 1230904 T C C19orf26 Silent p.G450G 0.34 TCGA-VQ-A8P2-01 19 12491655 12491655 G A CTD-3105H18.14 3'UTR 0.16 TCGA-VQ-A8P2-01 19 12543890 12543890 C T ZNF443 Missense_Mutation p.C42Y 0.22 tolerated(0.05) benign(0.015) TCGA-VQ-A8P2-01 19 12576397 12576397 A G ZNF709 Silent p.C113C 0.31 TCGA-VQ-A8P2-01 19 12637456 12637456 G A ZNF564 Missense_Mutation p.A489V 0.48 tolerated(0.49) benign(0.032) TCGA-VQ-A8P2-01 19 12638105 12638105 T G ZNF564 Silent p.R273R 0.41 TCGA-VQ-A8P2-01 19 1272159 1272159 G A CIRBP Intron 0.40 TCGA-VQ-A8P2-01 19 12826098 12826098 G A TNPO2 Missense_Mutation p.R203W 0.54 deleterious(0) benign(0.024) TCGA-VQ-A8P2-01 19 12826533 12826533 C T TNPO2 Missense_Mutation p.A116T 0.24 tolerated(0.26) benign(0.019) TCGA-VQ-A8P2-01 19 12865758 12865758 G A BEST2 Silent p.V183V 0.39 TCGA-VQ-A8P2-01 19 12907919 12907919 C T PRDX2 Silent p.K191K 0.43 TCGA-VQ-A8P2-01 19 1295557 1295557 G A EFNA2 Missense_Mutation p.A52T 0.56 tolerated_low_confidence(0.35) benign(0.001) TCGA-VQ-A8P2-01 19 12962991 12962991 C T MAST1 Silent p.G313G 0.45 TCGA-VQ-A8P2-01 19 12977489 12977489 C T MAST1 Silent p.H684H 0.21 TCGA-VQ-A8P2-01 19 13007122 13007122 G A GCDH Missense_Mutation p.A247T 0.42 tolerated_low_confidence(0.76) benign(0.007) TCGA-VQ-A8P2-01 19 13035529 13035529 G A FARSA Silent p.I373I 0.47 TCGA-VQ-A8P2-01 19 13084218 13084218 G A DAND5 Missense_Mutation p.G114S 0.14 tolerated(0.07) possibly_damaging(0.902) TCGA-VQ-A8P2-01 19 13186407 13186407 G A NFIX Missense_Mutation p.V293M 0.47 tolerated(0.18) probably_damaging(0.948) TCGA-VQ-A8P2-01 19 13218414 13218414 C T TRMT1 Silent p.A519A 0.24 TCGA-VQ-A8P2-01 19 13223558 13223558 G A TRMT1 Silent p.Y277Y 0.40 TCGA-VQ-A8P2-01 19 13397543 13397543 G T CACNA1A Silent p.I1109I 0.29 TCGA-VQ-A8P2-01 19 13414687 13414687 G A CACNA1A Silent p.G666G 0.35 TCGA-VQ-A8P2-01 19 1362350 1362350 G A MUM1 Missense_Mutation p.E406K 0.42 deleterious(0) possibly_damaging(0.81) TCGA-VQ-A8P2-01 19 13883014 13883014 C A MRI1 Silent p.V343V 0.49 TCGA-VQ-A8P2-01 19 14006278 14006278 C T C19orf57 Missense_Mutation p.G38D 0.39 tolerated(0.25) probably_damaging(0.982) TCGA-VQ-A8P2-01 19 14031566 14031566 A G CC2D1A Missense_Mutation p.Q491R 0.48 tolerated(0.31) probably_damaging(0.964) TCGA-VQ-A8P2-01 19 14047184 14047184 G A PODNL1 Silent p.S112S 0.44 TCGA-VQ-A8P2-01 19 14066817 14066817 G A DCAF15 Missense_Mutation p.V154I 0.47 tolerated(0.54) benign(0.061) TCGA-VQ-A8P2-01 19 14070429 14070429 G A DCAF15 Missense_Mutation p.V419M 0.30 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 19 14074011 14074011 C T RFX1 Missense_Mutation p.D883N 0.33 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8P2-01 19 14162973 14162973 G A IL27RA Silent p.P594P 0.38 TCGA-VQ-A8P2-01 19 14262145 14262145 G A LPHN1 Missense_Mutation p.A1322V 0.73 tolerated(0.27) benign(0.009) TCGA-VQ-A8P2-01 19 1434806 1434806 C T DAZAP1 Silent p.Y373Y 0.46 TCGA-VQ-A8P2-01 19 14520752 14520752 C A DDX39A Intron 0.46 TCGA-VQ-A8P2-01 19 1468662 1468662 C A APC2 Missense_Mutation p.L1788I 0.36 probably_damaging(0.934) TCGA-VQ-A8P2-01 19 14815916 14815916 G A ZNF333 Silent p.R119R 0.47 TCGA-VQ-A8P2-01 19 14862454 14862454 C T EMR2 Silent p.L606L 0.30 TCGA-VQ-A8P2-01 19 14884824 14884824 G A EMR2 Missense_Mutation p.A42V 0.40 deleterious(0) benign(0.015) TCGA-VQ-A8P2-01 19 1490297 1490297 C T PCSK4 Missense_Mutation p.A17T 0.44 tolerated(0.22) benign(0.011) TCGA-VQ-A8P2-01 19 14991604 14991604 G A OR7A17 Silent p.A188A 0.36 TCGA-VQ-A8P2-01 19 14991667 14991667 G T OR7A17 Silent p.S167S 0.33 TCGA-VQ-A8P2-01 19 15131379 15131379 G A CCDC105 Missense_Mutation p.R261H 0.61 tolerated(0.08) benign(0.391) TCGA-VQ-A8P2-01 19 15132189 15132189 C T CCDC105 Missense_Mutation p.A300V 0.47 deleterious(0.01) probably_damaging(0.987) TCGA-VQ-A8P2-01 19 15233592 15233592 C T ILVBL Missense_Mutation p.V210I 0.36 tolerated(1) benign(0.005) TCGA-VQ-A8P2-01 19 15302972 15302972 C A NOTCH3 Missense_Mutation p.D160Y 0.61 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 19 15354288 15354288 G A BRD4 Silent p.N864N 0.50 TCGA-VQ-A8P2-01 19 15376429 15376429 C T BRD4 Silent p.T195T 0.39 TCGA-VQ-A8P2-01 19 15511793 15511793 C T AKAP8L Missense_Mutation p.R293H 0.37 deleterious(0) probably_damaging(0.965) TCGA-VQ-A8P2-01 19 15587078 15587078 G A PGLYRP2 Missense_Mutation p.R135C 0.41 deleterious(0.02) benign(0.009) TCGA-VQ-A8P2-01 19 15730573 15730573 G C CYP4F8 Splice_Site 0.29 TCGA-VQ-A8P2-01 19 15739367 15739367 G A CYP4F8 RNA 0.38 TCGA-VQ-A8P2-01 19 15769342 15769342 C A CYP4F3 Missense_Mutation p.P431T 0.37 deleterious(0) probably_damaging(0.93) TCGA-VQ-A8P2-01 19 15795672 15795672 C A CYP4F12 Missense_Mutation p.A322D 0.26 deleterious(0) probably_damaging(0.99) TCGA-VQ-A8P2-01 19 15852438 15852438 C T OR10H3 Missense_Mutation p.T79I 0.39 tolerated(1) benign(0.003) TCGA-VQ-A8P2-01 19 15989736 15989736 C T CYP4F2 Missense_Mutation p.G470R 0.33 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 19 16008304 16008304 C T CYP4F2 Missense_Mutation p.A40T 0.30 tolerated(0.79) benign(0.001) TCGA-VQ-A8P2-01 19 16040266 16040266 C T CYP4F11 Splice_Site p.X115_splice 0.37 TCGA-VQ-A8P2-01 19 16514600 16514600 C T EPS15L1 Missense_Mutation p.V524I 0.31 tolerated(0.44) benign(0.005) TCGA-VQ-A8P2-01 19 16524607 16524607 T G EPS15L1 Silent p.R415R 0.43 TCGA-VQ-A8P2-01 19 16594879 16594879 A G CALR3 Silent p.L180L 0.15 TCGA-VQ-A8P2-01 19 16793288 16793288 C T TMEM38A Missense_Mutation p.P175S 0.27 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 19 16926046 16926046 C T NWD1 3'UTR 0.33 TCGA-VQ-A8P2-01 19 17107929 17107929 C T CPAMD8 Missense_Mutation p.V410M 0.24 tolerated(0.21) benign(0.097) TCGA-VQ-A8P2-01 19 17166750 17166750 G A HAUS8 Silent p.F236F 0.33 TCGA-VQ-A8P2-01 19 17283750 17283750 C T MYO9B Silent p.A706A 0.37 TCGA-VQ-A8P2-01 19 17320507 17320507 C T MYO9B Nonsense_Mutation p.R1913* 0.56 TCGA-VQ-A8P2-01 19 17373640 17373640 G A USHBP1 Silent p.T121T 0.43 TCGA-VQ-A8P2-01 19 17405635 17405635 G T ABHD8 Missense_Mutation p.L261M 0.32 deleterious(0.01) probably_damaging(0.949) TCGA-VQ-A8P2-01 19 17476719 17476719 G A PLVAP Silent p.S185S 0.31 TCGA-VQ-A8P2-01 19 17533086 17533086 G A MVB12A Intron 0.48 TCGA-VQ-A8P2-01 19 17597441 17597441 G A SLC27A1 Silent p.P79P 0.50 TCGA-VQ-A8P2-01 19 17597525 17597525 G A SLC27A1 Silent p.A107A 0.25 TCGA-VQ-A8P2-01 19 17651298 17651298 G A FAM129C Silent p.S390S 0.56 TCGA-VQ-A8P2-01 19 17690382 17690382 G A COLGALT1 Missense_Mutation p.R453Q 0.34 tolerated(0.43) benign(0.004) TCGA-VQ-A8P2-01 19 17983359 17983359 G A SLC5A5 Silent p.P77P 0.47 TCGA-VQ-A8P2-01 19 1817247 1817247 G T REXO1 Missense_Mutation p.P1058T 0.37 deleterious(0.01) benign(0.341) TCGA-VQ-A8P2-01 19 18191720 18191720 C T IL12RB1 Missense_Mutation p.V111I 0.34 tolerated(0.1) benign(0.197) TCGA-VQ-A8P2-01 19 1819942 1819942 C T REXO1 Missense_Mutation p.G881S 0.15 tolerated(0.86) benign(0.009) TCGA-VQ-A8P2-01 19 18309616 18309616 G A RAB3A Silent p.L131L 0.53 TCGA-VQ-A8P2-01 19 18474246 18474246 C T PGPEP1 Silent p.H161H 0.11 TCGA-VQ-A8P2-01 19 18507699 18507699 G A LRRC25 Silent p.C25C 0.56 TCGA-VQ-A8P2-01 19 18543814 18543814 T C SSBP4 Silent p.T291T 0.48 TCGA-VQ-A8P2-01 19 18779927 18779927 G A KLHL26 Missense_Mutation p.V574I 0.24 tolerated(0.37) benign(0.14) TCGA-VQ-A8P2-01 19 18882318 18882318 G A CRTC1 Missense_Mutation p.V479I 0.50 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 19 18888020 18888020 C T CRTC1 Missense_Mutation p.T594I 0.36 deleterious(0) possibly_damaging(0.697) TCGA-VQ-A8P2-01 19 18888145 18888145 C A CRTC1 Missense_Mutation p.L636M 0.10 deleterious(0) probably_damaging(0.956) TCGA-VQ-A8P2-01 19 18898400 18898400 G A COMP Silent p.G345G 0.13 TCGA-VQ-A8P2-01 19 18967689 18967689 G A UPF1 Missense_Mutation p.A610T 0.45 deleterious(0) probably_damaging(0.925) TCGA-VQ-A8P2-01 19 18968240 18968240 C T UPF1 Missense_Mutation p.R694W 0.11 deleterious(0.01) probably_damaging(0.957) TCGA-VQ-A8P2-01 19 18976408 18976408 C T UPF1 Missense_Mutation p.R1020C 0.10 tolerated(0.11) possibly_damaging(0.526) TCGA-VQ-A8P2-01 19 19035444 19035444 G A DDX49 Missense_Mutation p.A289T 0.37 deleterious(0.03) benign(0.279) TCGA-VQ-A8P2-01 19 19105046 19105047 TT - SUGP2 3'UTR 0.48 TCGA-VQ-A8P2-01 19 19106051 19106051 G A SUGP2 Silent p.T1010T 0.14 TCGA-VQ-A8P2-01 19 19115128 19115128 G A SUGP2 Silent p.G926G 0.46 TCGA-VQ-A8P2-01 19 19221578 19221578 C A SLC25A42 Missense_Mutation p.L284I 0.22 deleterious(0.04) probably_damaging(0.999) TCGA-VQ-A8P2-01 19 19344696 19344696 G A NCAN Missense_Mutation p.G1040R 0.47 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 19 19372347 19372347 G T HAPLN4 Missense_Mutation p.P10H 0.25 deleterious_low_confidence(0.01) unknown(0) TCGA-VQ-A8P2-01 19 19609379 19609379 C T GATAD2A Missense_Mutation p.A351V 0.56 deleterious(0) probably_damaging(0.988) TCGA-VQ-A8P2-01 19 19656226 19656226 G A CILP2 Missense_Mutation p.A958T 0.39 tolerated(0.6) benign(0.018) TCGA-VQ-A8P2-01 19 19735238 19735238 A G LPAR2 Missense_Mutation p.Y295H 0.10 deleterious(0) probably_damaging(0.991) TCGA-VQ-A8P2-01 19 19790274 19790274 G A ZNF101 Missense_Mutation p.R159H 0.32 tolerated(1) benign(0) TCGA-VQ-A8P2-01 19 19905727 19905727 G A ZNF506 Silent p.N323N 0.32 TCGA-VQ-A8P2-01 19 20116964 20116964 G A ZNF682 Silent p.A449A 0.40 TCGA-VQ-A8P2-01 19 20236057 20236057 C T CTC-260E6.2 RNA 0.65 TCGA-VQ-A8P2-01 19 20728475 20728475 A G ZNF737 Silent p.C178C 0.23 TCGA-VQ-A8P2-01 19 20829193 20829193 C T ZNF626 Missense_Mutation p.D8N 0.15 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 19 2098792 2098792 C T IZUMO4 Silent p.D181D 0.41 TCGA-VQ-A8P2-01 19 21106136 21106136 C A ZNF85 5'UTR 0.17 TCGA-VQ-A8P2-01 19 2123376 2123376 G A AP3D1 Silent p.I312I 0.10 TCGA-VQ-A8P2-01 19 21720864 21720864 G A ZNF429 Missense_Mutation p.R670Q 0.32 tolerated_low_confidence(0.36) benign(0.038) TCGA-VQ-A8P2-01 19 21991273 21991273 G T ZNF43 Silent p.S522S 0.26 TCGA-VQ-A8P2-01 19 21992087 21992087 T - ZNF43 Frame_Shift_Del p.N251Ifs*28 0.32 TCGA-VQ-A8P2-01 19 21992507 21992507 T - ZNF43 Frame_Shift_Del p.N111Mfs*4 0.24 TCGA-VQ-A8P2-01 19 2199894 2199894 C T DOT1L Silent p.G221G 0.53 TCGA-VQ-A8P2-01 19 2210669 2210669 C A DOT1L Missense_Mutation p.P389Q 0.07 deleterious(0) benign(0.057) TCGA-VQ-A8P2-01 19 22156785 22156785 T C ZNF208 Missense_Mutation p.S351G 0.34 tolerated(0.12) possibly_damaging(0.557) TCGA-VQ-A8P2-01 19 2222221 2222221 G A DOT1L Missense_Mutation p.G1018D 0.43 deleterious_low_confidence(0) possibly_damaging(0.504) TCGA-VQ-A8P2-01 19 22256301 22256301 C T ZNF257 Missense_Mutation p.T54I 0.30 tolerated(0.13) benign(0.08) TCGA-VQ-A8P2-01 19 22362728 22362728 G T ZNF676 3'UTR 0.38 TCGA-VQ-A8P2-01 19 22574531 22574531 G A ZNF98 Silent p.S502S 0.19 TCGA-VQ-A8P2-01 19 22605134 22605134 G T ZNF98 5'UTR 0.23 TCGA-VQ-A8P2-01 19 2271518 2271518 T G OAZ1 Missense_Mutation p.L94V 0.47 tolerated(0.08) benign(0.025) TCGA-VQ-A8P2-01 19 22817201 22817201 C A ZNF492 5'UTR 0.17 TCGA-VQ-A8P2-01 19 2344608 2344608 C T SPPL2B RNA 0.32 TCGA-VQ-A8P2-01 19 23542673 23542673 C A ZNF91 Missense_Mutation p.K1036N 0.10 tolerated(0.66) benign(0.101) TCGA-VQ-A8P2-01 19 2399113 2399113 C T TMPRSS9 Nonsense_Mutation p.R112* 0.29 TCGA-VQ-A8P2-01 19 2434870 2434870 C A LMNB2 Silent p.A299A 0.29 TCGA-VQ-A8P2-01 19 2732743 2732743 G T SLC39A3 3'UTR 0.50 TCGA-VQ-A8P2-01 19 2807516 2807516 C T THOP1 Silent p.C321C 0.48 TCGA-VQ-A8P2-01 19 30099597 30099597 C T POP4 Missense_Mutation p.A14V 0.35 deleterious(0.03) benign(0.023) TCGA-VQ-A8P2-01 19 30165153 30165153 C T PLEKHF1 Missense_Mutation p.A136V 0.36 deleterious(0.01) benign(0.363) TCGA-VQ-A8P2-01 19 30462126 30462126 C T URI1 Silent p.I48I 0.42 TCGA-VQ-A8P2-01 19 30499920 30499920 A C URI1 Missense_Mutation p.D232A 0.21 deleterious(0.01) benign(0.211) TCGA-VQ-A8P2-01 19 30934691 30934691 C T ZNF536 Silent p.G74G 0.20 TCGA-VQ-A8P2-01 19 30935399 30935399 G A ZNF536 Silent p.S310S 0.44 TCGA-VQ-A8P2-01 19 30935514 30935514 G A ZNF536 Missense_Mutation p.V349M 0.43 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 19 30936447 30936447 G A ZNF536 Missense_Mutation p.E660K 0.44 tolerated(0.87) benign(0.033) TCGA-VQ-A8P2-01 19 31039226 31039226 C T ZNF536 Silent p.I900I 0.41 TCGA-VQ-A8P2-01 19 31039805 31039805 C T ZNF536 Silent p.S1093S 0.40 TCGA-VQ-A8P2-01 19 3162929 3162929 C A GNA15 Missense_Mutation p.A346D 0.41 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 19 31767780 31767780 G T TSHZ3 Missense_Mutation p.H973Q 0.08 tolerated(0.47) benign(0.047) TCGA-VQ-A8P2-01 19 31769141 31769142 - C TSHZ3 Frame_Shift_Ins p.L520Afs*2 0.37 TCGA-VQ-A8P2-01 19 31769316 31769316 G A TSHZ3 Silent p.S461S 0.18 TCGA-VQ-A8P2-01 19 31769981 31769981 G A TSHZ3 Missense_Mutation p.R240C 0.39 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 19 31770061 31770061 T G TSHZ3 Missense_Mutation p.K213T 0.44 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 19 3179518 3179518 G A S1PR4 Missense_Mutation p.R243H 0.51 deleterious(0.01) probably_damaging(0.985) TCGA-VQ-A8P2-01 19 3179784 3179784 C T S1PR4 Nonsense_Mutation p.R332* 0.15 TCGA-VQ-A8P2-01 19 3281335 3281335 G A CELF5 Missense_Mutation p.A248T 0.48 tolerated(0.89) benign(0.08) TCGA-VQ-A8P2-01 19 32844564 32844564 C A ZNF507 Nonsense_Mutation p.C276* 0.39 TCGA-VQ-A8P2-01 19 32845371 32845371 G A ZNF507 Silent p.S545S 0.16 TCGA-VQ-A8P2-01 19 32971350 32971350 C A DPY19L3 Missense_Mutation p.L626I 0.33 tolerated(1) benign(0.009) TCGA-VQ-A8P2-01 19 33122354 33122354 C A ANKRD27 Missense_Mutation p.S388I 0.28 deleterious(0.02) possibly_damaging(0.727) TCGA-VQ-A8P2-01 19 33355111 33355111 C T SLC7A9 Silent p.T123T 0.25 TCGA-VQ-A8P2-01 19 33584418 33584418 C G GPATCH1 Missense_Mutation p.P150A 0.25 deleterious(0) possibly_damaging(0.656) TCGA-VQ-A8P2-01 19 3381932 3381932 C T NFIC Missense_Mutation p.R85W 0.44 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 19 34791357 34791357 C A KIAA0355 5'UTR 0.31 TCGA-VQ-A8P2-01 19 34791600 34791600 C T KIAA0355 Silent p.A74A 0.43 TCGA-VQ-A8P2-01 19 34890896 34890896 G A GPI Silent p.G555G 0.13 TCGA-VQ-A8P2-01 19 34895871 34895872 AG - RP11-618P17.4 Frame_Shift_Del p.E136Gfs*14 0.32 TCGA-VQ-A8P2-01 19 34929617 34929617 G A UBA2 Missense_Mutation p.R176H 0.33 deleterious(0) probably_damaging(0.961) TCGA-VQ-A8P2-01 19 34935921 34935921 C T UBA2 Silent p.A222A 0.33 TCGA-VQ-A8P2-01 19 34942962 34942962 G T UBA2 Missense_Mutation p.K316N 0.41 tolerated(0.35) benign(0.06) TCGA-VQ-A8P2-01 19 35169686 35169686 T C ZNF302 5'UTR 0.15 TCGA-VQ-A8P2-01 19 35176147 35176147 G A ZNF302 3'UTR 0.38 TCGA-VQ-A8P2-01 19 3527783 3527783 G A FZR1 Missense_Mutation p.V209M 0.45 deleterious(0) probably_damaging(0.962) TCGA-VQ-A8P2-01 19 35449253 35449253 A G ZNF792 Silent p.G502G 0.47 TCGA-VQ-A8P2-01 19 35512422 35512422 C T GRAMD1A Missense_Mutation p.R498C 0.35 tolerated(0.23) benign(0.072) TCGA-VQ-A8P2-01 19 35633383 35633383 G A FXYD1 Missense_Mutation p.E72K 0.31 tolerated(0.2) benign(0.217) TCGA-VQ-A8P2-01 19 35639628 35639628 T C FXYD7 Splice_Site p.X21_splice 0.38 TCGA-VQ-A8P2-01 19 35642268 35642268 G A FXYD7 Intron 0.08 TCGA-VQ-A8P2-01 19 35800938 35800938 C T MAG Missense_Mutation p.R465C 0.38 deleterious(0.02) possibly_damaging(0.642) TCGA-VQ-A8P2-01 19 36014401 36014401 C T SBSN 3'UTR 0.41 TCGA-VQ-A8P2-01 19 36033229 36033229 C T GAPDHS Missense_Mutation p.P153L 0.30 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-VQ-A8P2-01 19 36041796 36041796 C T ATP4A Missense_Mutation p.G1007S 0.37 tolerated(1) possibly_damaging(0.879) TCGA-VQ-A8P2-01 19 36050919 36050919 C T ATP4A Missense_Mutation p.A282T 0.45 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 19 36110348 36110348 G A HAUS5 Missense_Mutation p.R401H 0.21 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 19 36207661 36207661 G A ZBTB32 3'UTR 0.48 TCGA-VQ-A8P2-01 19 36229010 36229010 C T KMT2B Missense_Mutation p.A2597V 0.47 possibly_damaging(0.876) TCGA-VQ-A8P2-01 19 3624073 3624073 G T CACTIN Silent p.S85S 0.10 TCGA-VQ-A8P2-01 19 36253209 36253209 C T C19orf55 Silent p.N165N 0.58 TCGA-VQ-A8P2-01 19 36339299 36339299 C T NPHS1 Missense_Mutation p.G391R 0.44 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8P2-01 19 36357152 36357153 - C KIRREL2 Frame_Shift_Ins p.L631Pfs*11 0.33 TCGA-VQ-A8P2-01 19 36398364 36398364 C - TYROBP Frame_Shift_Del p.R72Efs*47 0.27 TCGA-VQ-A8P2-01 19 36499226 36499226 G T SYNE4 Missense_Mutation p.P58T 0.38 tolerated_low_confidence(0.08) probably_damaging(0.981) TCGA-VQ-A8P2-01 19 3653379 3653379 T C PIP5K1C Missense_Mutation p.D277G 0.41 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 19 36564418 36564418 C T WDR62 Silent p.Y406Y 0.33 TCGA-VQ-A8P2-01 19 36592920 36592920 C T WDR62 Silent p.C1029C 0.12 TCGA-VQ-A8P2-01 19 36593978 36593978 T C WDR62 Splice_Site p.X1154_splice 0.42 TCGA-VQ-A8P2-01 19 36674586 36674586 G A ZNF565 Silent p.I94I 0.38 TCGA-VQ-A8P2-01 19 36728168 36728168 G T ZNF146 Missense_Mutation p.A276S 0.28 tolerated(0.08) benign(0.361) TCGA-VQ-A8P2-01 19 37118045 37118045 G A ZNF382 Missense_Mutation p.A416T 0.32 tolerated(1) probably_damaging(1) TCGA-VQ-A8P2-01 19 37130485 37130485 G T ZNF461 Silent p.A254A 0.16 TCGA-VQ-A8P2-01 19 37382578 37382578 C A ZNF829 Missense_Mutation p.R453I 0.17 deleterious(0.02) probably_damaging(0.995) TCGA-VQ-A8P2-01 19 37441802 37441802 G T ZNF568 Nonsense_Mutation p.E583* 0.41 TCGA-VQ-A8P2-01 19 3754028 3754028 C T APBA3 Missense_Mutation p.A280T 0.60 tolerated(0.29) benign(0.003) TCGA-VQ-A8P2-01 19 37642791 37642791 G T ZNF585A Silent p.T615T 0.28 TCGA-VQ-A8P2-01 19 3767435 3767435 C T MRPL54 3'UTR 0.65 TCGA-VQ-A8P2-01 19 37726531 37726531 A G ZNF383 Silent p.L30L 0.11 TCGA-VQ-A8P2-01 19 3783922 3783922 G T MATK Missense_Mutation p.L159M 0.54 deleterious(0.04) probably_damaging(0.998) TCGA-VQ-A8P2-01 19 37853959 37853959 G A HKR1 Missense_Mutation p.G421D 0.17 tolerated(0.07) possibly_damaging(0.864) TCGA-VQ-A8P2-01 19 37975157 37975157 C A ZNF570 Silent p.V211V 0.38 TCGA-VQ-A8P2-01 19 38089332 38089332 C T ZNF540 5'UTR 0.37 TCGA-VQ-A8P2-01 19 38103018 38103018 T - ZNF540 Frame_Shift_Del p.F281Lfs*4 0.28 TCGA-VQ-A8P2-01 19 38572721 38572721 C T SIPA1L3 Silent p.S172S 0.34 TCGA-VQ-A8P2-01 19 38621226 38621226 C T SIPA1L3 Missense_Mutation p.T986M 0.34 deleterious(0) probably_damaging(0.96) TCGA-VQ-A8P2-01 19 38743599 38743599 C T PPP1R14A Missense_Mutation p.D73N 0.07 tolerated(0.07) probably_damaging(0.993) TCGA-VQ-A8P2-01 19 38817379 38817379 C T KCNK6 Silent p.L157L 0.34 TCGA-VQ-A8P2-01 19 38948923 38948923 C T RYR1 Missense_Mutation p.L720F 0.35 probably_damaging(1) TCGA-VQ-A8P2-01 19 38976306 38976306 G A RYR1 Missense_Mutation p.A1671T 0.41 benign(0.242) TCGA-VQ-A8P2-01 19 38985047 38985047 C T RYR1 Silent p.F2110F 0.11 TCGA-VQ-A8P2-01 19 39062778 39062778 C T RYR1 Silent p.G4622G 0.39 TCGA-VQ-A8P2-01 19 39224422 39224422 C A CAPN12 Splice_Site p.X627_splice 0.33 TCGA-VQ-A8P2-01 19 39307121 39307121 G A ECH1 Missense_Mutation p.R211C 0.38 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 19 39360263 39360263 T C RINL Missense_Mutation p.D475G 0.31 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 19 3964935 3964935 G A DAPK3 Silent p.Y39Y 0.44 TCGA-VQ-A8P2-01 19 39664230 39664230 C T PAK4 Silent p.D226D 0.35 TCGA-VQ-A8P2-01 19 39667320 39667320 C T PAK4 Missense_Mutation p.P484S 0.39 deleterious(0) probably_damaging(0.994) TCGA-VQ-A8P2-01 19 39799104 39799104 C T LRFN1 Silent p.A495A 0.33 TCGA-VQ-A8P2-01 19 3980044 3980044 C T EEF2 Missense_Mutation p.R456H 0.25 deleterious(0.04) benign(0.14) TCGA-VQ-A8P2-01 19 39819712 39819712 G A GMFG Silent p.G95G 0.39 TCGA-VQ-A8P2-01 19 39879976 39879976 T C PAF1 Missense_Mutation p.Y136C 0.41 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 19 39907525 39907525 C T PLEKHG2 Missense_Mutation p.P210L 0.40 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-VQ-A8P2-01 19 39908314 39908314 G T PLEKHG2 Missense_Mutation p.E288D 0.32 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-VQ-A8P2-01 19 39915139 39915139 G A PLEKHG2 Silent p.R1122R 0.33 TCGA-VQ-A8P2-01 19 39923918 39923918 G A RPS16 Nonsense_Mutation p.R146* 0.45 TCGA-VQ-A8P2-01 19 40362797 40362797 G A FCGBP Silent p.C5091C 0.35 TCGA-VQ-A8P2-01 19 40362836 40362836 G A FCGBP Silent p.Y5078Y 0.47 TCGA-VQ-A8P2-01 19 40366028 40366028 G A FCGBP Missense_Mutation p.P4736S 0.11 benign(0.416) TCGA-VQ-A8P2-01 19 40392091 40392091 C A FCGBP Missense_Mutation p.E2765D 0.50 probably_damaging(0.997) TCGA-VQ-A8P2-01 19 40398322 40398322 G A FCGBP Silent p.N2215N 0.32 TCGA-VQ-A8P2-01 19 40408010 40408010 C T FCGBP Missense_Mutation p.G1571S 0.32 unknown(0) TCGA-VQ-A8P2-01 19 40408707 40408707 C T FCGBP Missense_Mutation p.V1378I 0.08 possibly_damaging(0.683) TCGA-VQ-A8P2-01 19 40412069 40412069 C T FCGBP Missense_Mutation p.A1187T 0.29 probably_damaging(0.909) TCGA-VQ-A8P2-01 19 40433093 40433093 C T FCGBP Silent p.S392S 0.64 TCGA-VQ-A8P2-01 19 4047803 4047803 C T ZBTB7A Missense_Mutation p.G568R 0.29 tolerated_low_confidence(0.06) probably_damaging(0.956) TCGA-VQ-A8P2-01 19 40519987 40519987 G A ZNF546 Silent p.E270E 0.30 TCGA-VQ-A8P2-01 19 40540242 40540242 C T ZNF780B 3'UTR 0.30 TCGA-VQ-A8P2-01 19 40580566 40580566 G A ZNF780A Nonsense_Mutation p.R596* 0.45 TCGA-VQ-A8P2-01 19 40743902 40743902 G A AKT2 Missense_Mutation p.R269W 0.39 deleterious(0.01) possibly_damaging(0.893) TCGA-VQ-A8P2-01 19 40745960 40745960 A G AKT2 Missense_Mutation p.F211L 0.37 deleterious(0.02) possibly_damaging(0.688) TCGA-VQ-A8P2-01 19 40872396 40872396 G A PLD3 Silent p.K2K 0.43 TCGA-VQ-A8P2-01 19 40902633 40902633 C T PRX Silent p.R542R 0.45 TCGA-VQ-A8P2-01 19 40902686 40902686 C T PRX Missense_Mutation p.V525M 0.31 tolerated(0.23) possibly_damaging(0.781) TCGA-VQ-A8P2-01 19 40904607 40904607 G A PRX Missense_Mutation p.P101S 0.35 deleterious(0.01) possibly_damaging(0.803) TCGA-VQ-A8P2-01 19 41066129 41066129 C T SPTBN4 Missense_Mutation p.A1912V 0.41 tolerated(0.21) probably_damaging(0.995) TCGA-VQ-A8P2-01 19 41132932 41132932 G A LTBP4 Silent p.P1412P 0.53 TCGA-VQ-A8P2-01 19 41132960 41132960 G A LTBP4 Missense_Mutation p.E1422K 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-VQ-A8P2-01 19 41188843 41188843 G A NUMBL Missense_Mutation p.R94W 0.33 deleterious(0) probably_damaging(0.989) TCGA-VQ-A8P2-01 19 41384787 41384787 C T CYP2A7 Missense_Mutation p.A237T 0.31 deleterious(0.02) possibly_damaging(0.465) TCGA-VQ-A8P2-01 19 41510201 41510201 G T CYP2B6 Splice_Site p.X112_splice 0.38 TCGA-VQ-A8P2-01 19 41515250 41515250 C T CYP2B6 Missense_Mutation p.P258S 0.33 tolerated(0.05) possibly_damaging(0.453) TCGA-VQ-A8P2-01 19 41601774 41601774 C T CYP2A13 Silent p.I471I 0.15 TCGA-VQ-A8P2-01 19 41631452 41631452 C A CYP2F1 Missense_Mutation p.L403M 0.22 deleterious(0.04) possibly_damaging(0.537) TCGA-VQ-A8P2-01 19 4168366 4168366 A - CREB3L3 Frame_Shift_Del p.I247Sfs*57 0.18 TCGA-VQ-A8P2-01 19 41744003 41744003 G A AXL Missense_Mutation p.S313N 0.42 tolerated(0.96) probably_damaging(1) TCGA-VQ-A8P2-01 19 41778068 41778068 A G HNRNPUL1 Missense_Mutation p.Q167R 0.38 tolerated(0.45) unknown(0) TCGA-VQ-A8P2-01 19 41800263 41800263 G A HNRNPUL1 Silent p.L429L 0.60 TCGA-VQ-A8P2-01 19 41800572 41800572 G A HNRNPUL1 Missense_Mutation p.R500H 0.38 deleterious(0) unknown(0) TCGA-VQ-A8P2-01 19 41807593 41807593 G T HNRNPUL1 Silent p.A557A 0.32 TCGA-VQ-A8P2-01 19 41822663 41822663 C T CCDC97 Missense_Mutation p.R141W 0.44 deleterious(0.01) possibly_damaging(0.614) TCGA-VQ-A8P2-01 19 41889654 41889654 G A TMEM91 Missense_Mutation p.G132E 0.13 tolerated(0.53) probably_damaging(1) TCGA-VQ-A8P2-01 19 41938276 41938276 C T ATP5SL Missense_Mutation p.V218M 0.20 deleterious(0) probably_damaging(0.993) TCGA-VQ-A8P2-01 19 42260653 42260653 C T CEACAM6 Silent p.G70G 0.08 TCGA-VQ-A8P2-01 19 4234820 4234820 G A EBI3 Missense_Mutation p.R179Q 0.08 tolerated(1) benign(0.002) TCGA-VQ-A8P2-01 19 42490289 42490289 G T ATP1A3 Silent p.S163S 0.23 TCGA-VQ-A8P2-01 19 42510004 42510004 C T GRIK5 Missense_Mutation p.V712I 0.46 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8P2-01 19 42584157 42584157 C T ZNF574 Missense_Mutation p.R467C 0.36 deleterious(0.02) possibly_damaging(0.876) TCGA-VQ-A8P2-01 19 42599730 42599730 G A POU2F2 Silent p.N307N 0.32 TCGA-VQ-A8P2-01 19 42703806 42703806 C T DEDD2 Silent p.E255E 0.56 TCGA-VQ-A8P2-01 19 42728680 42728680 C A ZNF526 Missense_Mutation p.P42H 0.43 deleterious_low_confidence(0.01) benign(0.004) TCGA-VQ-A8P2-01 19 42729432 42729432 C T ZNF526 Missense_Mutation p.R293W 0.18 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 19 42729963 42729963 C T ZNF526 Missense_Mutation p.R470W 0.45 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 19 42744316 42744316 C T GSK3A Intron 0.10 TCGA-VQ-A8P2-01 19 42790962 42790962 C T CIC Missense_Mutation p.P36L 0.15 probably_damaging(0.98) TCGA-VQ-A8P2-01 19 42793349 42793349 C T CIC Missense_Mutation p.A384V 0.45 benign(0.001) TCGA-VQ-A8P2-01 19 42813851 42813851 C T PRR19 Missense_Mutation p.P39S 0.38 tolerated(0.15) benign(0.028) TCGA-VQ-A8P2-01 19 42814044 42814044 C T PRR19 Missense_Mutation p.P103L 0.33 deleterious(0.05) benign(0.116) TCGA-VQ-A8P2-01 19 42839279 42839279 C T MEGF8 Silent p.N217N 0.29 TCGA-VQ-A8P2-01 19 42847702 42847702 T C MEGF8 Silent p.A529A 0.41 TCGA-VQ-A8P2-01 19 42872638 42872638 G A MEGF8 Missense_Mutation p.C2035Y 0.33 deleterious(0.03) probably_damaging(0.999) TCGA-VQ-A8P2-01 19 4311978 4311978 G A FSD1 Silent p.P210P 0.32 TCGA-VQ-A8P2-01 19 43358421 43358421 G A PSG10P RNA 0.36 TCGA-VQ-A8P2-01 19 43373060 43373060 C A PSG1 Missense_Mutation p.S279I 0.28 tolerated(0.41) benign(0.287) TCGA-VQ-A8P2-01 19 43420558 43420558 T G PSG6 Missense_Mutation p.K49T 0.10 deleterious(0) probably_damaging(0.961) TCGA-VQ-A8P2-01 19 43528981 43528981 G A PSG11 Nonsense_Mutation p.R98* 0.45 TCGA-VQ-A8P2-01 19 43708155 43708155 C T PSG4 Missense_Mutation p.A105T 0.38 deleterious(0) probably_damaging(0.983) TCGA-VQ-A8P2-01 19 44057634 44057634 G T XRCC1 Missense_Mutation p.R174S 0.10 deleterious(0.01) probably_damaging(0.978) TCGA-VQ-A8P2-01 19 44112217 44112217 G A ZNF428 Missense_Mutation p.P40L 0.41 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-VQ-A8P2-01 19 44153221 44153221 C T PLAUR Missense_Mutation p.A277T 0.25 tolerated(0.19) probably_damaging(0.988) TCGA-VQ-A8P2-01 19 44171772 44171772 G A PLAUR Nonsense_Mutation p.Q43* 0.10 TCGA-VQ-A8P2-01 19 44351433 44351433 G A ZNF283 Missense_Mutation p.R227K 0.48 tolerated(0.18) probably_damaging(0.948) TCGA-VQ-A8P2-01 19 44376857 44376857 G A ZNF404 Silent p.A503A 0.15 TCGA-VQ-A8P2-01 19 4446052 4446052 G A UBXN6 Silent p.C398C 0.49 TCGA-VQ-A8P2-01 19 44470305 44470305 G T ZNF221 Missense_Mutation p.Q217H 0.17 deleterious(0.03) benign(0.03) TCGA-VQ-A8P2-01 19 44536648 44536648 G T ZNF222 Missense_Mutation p.R314M 0.35 tolerated(0.16) possibly_damaging(0.796) TCGA-VQ-A8P2-01 19 44570874 44570874 G A ZNF223 Missense_Mutation p.R298H 0.10 tolerated(0.44) benign(0.014) TCGA-VQ-A8P2-01 19 44660628 44660629 - A ZNF234 Frame_Shift_Ins p.S156Ifs*4 0.35 TCGA-VQ-A8P2-01 19 44739646 44739646 G A ZNF227 Missense_Mutation p.E355K 0.44 tolerated(0.07) probably_damaging(0.947) TCGA-VQ-A8P2-01 19 44792272 44792272 C T ZNF235 Missense_Mutation p.R439H 0.34 deleterious(0.03) probably_damaging(0.988) TCGA-VQ-A8P2-01 19 44832751 44832751 T C ZNF112 Missense_Mutation p.K526R 0.36 tolerated(0.08) probably_damaging(0.909) TCGA-VQ-A8P2-01 19 4501322 4501322 C A HDGFRP2 Missense_Mutation p.L642M 0.33 deleterious_low_confidence(0.02) possibly_damaging(0.82) TCGA-VQ-A8P2-01 19 4511758 4511758 G A PLIN4 Silent p.T724T 0.12 TCGA-VQ-A8P2-01 19 4516648 4516648 T C PLIN4 Missense_Mutation p.E65G 0.45 tolerated(0.38) benign(0.002) TCGA-VQ-A8P2-01 19 45213880 45213880 C A CEACAM16 3'UTR 0.47 TCGA-VQ-A8P2-01 19 4528961 4528961 A G PLIN5 Intron 0.20 TCGA-VQ-A8P2-01 19 45297502 45297503 - C CBLC Frame_Shift_Ins p.R445Qfs*55 0.28 TCGA-VQ-A8P2-01 19 45316732 45316732 G A BCAM Silent p.S213S 0.35 TCGA-VQ-A8P2-01 19 45385527 45385527 G A PVRL2 Missense_Mutation p.A368T 0.27 tolerated(0.16) benign(0.069) TCGA-VQ-A8P2-01 19 45391455 45391455 C T PVRL2 Missense_Mutation p.P479L 0.40 tolerated_low_confidence(1) benign(0) TCGA-VQ-A8P2-01 19 45495512 45495512 A G CLPTM1 Missense_Mutation p.Q526R 0.36 deleterious(0) probably_damaging(0.994) TCGA-VQ-A8P2-01 19 4550841 4550841 G A SEMA6B Missense_Mutation p.P364L 0.26 deleterious(0) benign(0.279) TCGA-VQ-A8P2-01 19 45535864 45535864 G A RELB Missense_Mutation p.R355H 0.41 deleterious(0.02) probably_damaging(0.997) TCGA-VQ-A8P2-01 19 45561135 45561135 G T CLASRP Missense_Mutation p.D198Y 0.12 deleterious(0) probably_damaging(0.931) TCGA-VQ-A8P2-01 19 45655181 45655181 C T NKPD1 3'UTR 0.12 TCGA-VQ-A8P2-01 19 45805774 45805774 C A MARK4 Missense_Mutation p.R689S 0.40 tolerated(0.06) benign(0.001) TCGA-VQ-A8P2-01 19 45852795 45852795 C A KLC3 Missense_Mutation p.L360M 0.34 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 19 45899633 45899633 C T PPP1R13L Silent p.A258A 0.08 TCGA-VQ-A8P2-01 19 45918127 45918127 C T ERCC1 Missense_Mutation p.V232I 0.19 tolerated(0.14) benign(0.005) TCGA-VQ-A8P2-01 19 45923662 45923662 G A ERCC1 Silent p.F115F 0.32 TCGA-VQ-A8P2-01 19 45975914 45975914 G T FOSB Missense_Mutation p.G221C 0.44 tolerated(0.06) probably_damaging(0.993) TCGA-VQ-A8P2-01 19 46002489 46002489 G A PPM1N Silent p.A253A 0.40 TCGA-VQ-A8P2-01 19 46056693 46056693 G A OPA3 Intron 0.48 TCGA-VQ-A8P2-01 19 46180970 46180970 G A GIPR Missense_Mutation p.C286Y 0.40 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8P2-01 19 46281835 46281835 C T DMPK Missense_Mutation p.R176Q 0.55 deleterious(0) probably_damaging(0.959) TCGA-VQ-A8P2-01 19 46307885 46307885 G A RSPH6A Silent p.Y426Y 0.33 TCGA-VQ-A8P2-01 19 46313885 46313885 G A RSPH6A Silent p.G288G 0.49 TCGA-VQ-A8P2-01 19 46318356 46318356 G A RSPH6A Missense_Mutation p.R27W 0.60 deleterious_low_confidence(0.03) benign(0) TCGA-VQ-A8P2-01 19 46357711 46357711 C T SYMPK Missense_Mutation p.A15T 0.12 deleterious(0.01) benign(0.343) TCGA-VQ-A8P2-01 19 46733641 46733641 G C IGFL1 Missense_Mutation p.A64P 0.38 tolerated(0.12) benign(0.012) TCGA-VQ-A8P2-01 19 4683627 4683627 G A DPP9 Silent p.I731I 0.09 TCGA-VQ-A8P2-01 19 46914836 46914836 G A CCDC8 Missense_Mutation p.A411V 0.09 benign(0.015) TCGA-VQ-A8P2-01 19 46997775 46997775 C T PNMAL2 Silent p.S316S 0.37 TCGA-VQ-A8P2-01 19 47151975 47151975 C T DACT3 Missense_Mutation p.A552T 0.47 tolerated(0.08) benign(0.005) TCGA-VQ-A8P2-01 19 47177819 47177819 G A PRKD2 Silent p.H866H 0.36 TCGA-VQ-A8P2-01 19 47181702 47181702 G A PRKD2 Silent p.N763N 0.40 TCGA-VQ-A8P2-01 19 47240149 47240149 C A STRN4 Missense_Mutation p.G157V 0.26 tolerated(0.08) probably_damaging(1) TCGA-VQ-A8P2-01 19 47342018 47342018 G A AP2S1 Silent p.D102D 0.08 TCGA-VQ-A8P2-01 19 47422059 47422059 G A ARHGAP35 Missense_Mutation p.V43M 0.13 tolerated(0.16) probably_damaging(0.999) TCGA-VQ-A8P2-01 19 47423848 47423849 - A ARHGAP35 Frame_Shift_Ins p.I640Nfs*43 0.29 TCGA-VQ-A8P2-01 19 47425084 47425084 T A ARHGAP35 Missense_Mutation p.I1051N 0.47 deleterious(0.04) benign(0.446) TCGA-VQ-A8P2-01 19 47597736 47597738 CTC - ZC3H4 In_Frame_Del p.E97del 0.35 TCGA-VQ-A8P2-01 19 4770775 4770775 C T MIR7-3 RNA 0.39 TCGA-VQ-A8P2-01 19 47823751 47823751 G T C5AR1 Missense_Mutation p.K239N 0.16 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 19 47844042 47844042 A G C5AR2 Intron 0.17 TCGA-VQ-A8P2-01 19 47865842 47865842 G A DHX34 Silent p.T495T 0.27 TCGA-VQ-A8P2-01 19 47883106 47883106 G A DHX34 Missense_Mutation p.R949H 0.18 tolerated(0.22) benign(0.001) TCGA-VQ-A8P2-01 19 47884510 47884510 C T DHX34 Missense_Mutation p.A1076V 0.41 tolerated(0.07) benign(0.002) TCGA-VQ-A8P2-01 19 47885295 47885295 C T DHX34 Silent p.Y1119Y 0.45 TCGA-VQ-A8P2-01 19 47979937 47979937 G A KPTN Missense_Mutation p.S345L 0.24 tolerated(0.13) benign(0.002) TCGA-VQ-A8P2-01 19 47996763 47996763 C T NAPA Intron 0.41 TCGA-VQ-A8P2-01 19 47996847 47996847 G A NAPA Intron 0.50 TCGA-VQ-A8P2-01 19 4818123 4818123 G A TICAM1 Silent p.P89P 0.38 TCGA-VQ-A8P2-01 19 48198189 48198190 - G GLTSCR1 Frame_Shift_Ins p.A979Gfs*86 0.41 TCGA-VQ-A8P2-01 19 48219935 48219935 C T EHD2 Silent p.T22T 0.33 TCGA-VQ-A8P2-01 19 48244378 48244378 G A EHD2 Missense_Mutation p.E441K 0.28 tolerated(0.06) benign(0.158) TCGA-VQ-A8P2-01 19 48244667 48244667 G A EHD2 Missense_Mutation p.R537H 0.56 tolerated(0.08) benign(0.007) TCGA-VQ-A8P2-01 19 48305400 48305400 G T TPRX1 Missense_Mutation p.P290T 0.54 deleterious(0.01) possibly_damaging(0.803) TCGA-VQ-A8P2-01 19 48343051 48343051 G A CRX Missense_Mutation p.G243R 0.47 deleterious(0.01) probably_damaging(0.988) TCGA-VQ-A8P2-01 19 48343205 48343205 G T CRX Missense_Mutation p.W294L 0.35 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 19 48543927 48543927 C A CABP5 Missense_Mutation p.R58M 0.35 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 19 4859923 4859923 G A PLIN3 Silent p.C60C 0.50 TCGA-VQ-A8P2-01 19 48636269 48636269 G A LIG1 Silent p.C565C 0.39 TCGA-VQ-A8P2-01 19 48908118 48908118 G A GRIN2D Missense_Mutation p.R198Q 0.38 tolerated(0.49) benign(0.034) TCGA-VQ-A8P2-01 19 4902846 4902846 G - ARRDC5 Frame_Shift_Del p.Q12Nfs*7 0.27 TCGA-VQ-A8P2-01 19 49094881 49094881 C T SULT2B1 Missense_Mutation p.R147C 0.52 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 19 49129185 49129185 G A SPHK2 Missense_Mutation p.G26E 0.29 tolerated_low_confidence(0.22) benign(0.054) TCGA-VQ-A8P2-01 19 49183617 49183617 G A RN7SL345P 5'Flank 0.33 TCGA-VQ-A8P2-01 19 49206567 49206567 G A FUT2 Silent p.T118T 0.34 TCGA-VQ-A8P2-01 19 4945884 4945884 G A UHRF1 RNA 0.30 TCGA-VQ-A8P2-01 19 49518838 49518838 G A RUVBL2 Missense_Mutation p.V421M 0.23 deleterious(0) probably_damaging(0.98) TCGA-VQ-A8P2-01 19 49519941 49519941 C A LHB Missense_Mutation p.G16C 0.34 tolerated(0.17) probably_damaging(0.956) TCGA-VQ-A8P2-01 19 49536286 49536286 C T CGB2 Silent p.Y100Y 0.60 TCGA-VQ-A8P2-01 19 49547383 49547383 C T CGB5 5'UTR 0.30 TCGA-VQ-A8P2-01 19 49573329 49573329 G A KCNA7 Silent p.T454T 0.34 TCGA-VQ-A8P2-01 19 49619557 49619557 C T LIN7B Missense_Mutation p.A89V 0.16 deleterious(0) possibly_damaging(0.548) TCGA-VQ-A8P2-01 19 49643053 49643053 G A PPFIA3 Silent p.A735A 0.17 TCGA-VQ-A8P2-01 19 49657816 49657816 C T HRC Missense_Mutation p.V227I 0.32 tolerated(0.21) benign(0.031) TCGA-VQ-A8P2-01 19 49812144 49812144 G T SLC6A16 Silent p.R406R 0.32 TCGA-VQ-A8P2-01 19 49846583 49846583 C T TEAD2 Missense_Mutation p.G332R 0.14 deleterious(0.02) benign(0.354) TCGA-VQ-A8P2-01 19 49949891 49949891 G - PIH1D1 Frame_Shift_Del p.Q250Sfs*6 0.34 TCGA-VQ-A8P2-01 19 49972164 49972164 C T ALDH16A1 Missense_Mutation p.T723I 0.28 deleterious(0.01) probably_damaging(0.998) TCGA-VQ-A8P2-01 19 50098054 50098054 G T PRR12 Silent p.P154P 0.43 TCGA-VQ-A8P2-01 19 50105061 50105061 G A PRR12 Silent p.E1553E 0.14 TCGA-VQ-A8P2-01 19 50158031 50158031 C G SCAF1 Silent p.G1174G 0.39 TCGA-VQ-A8P2-01 19 50215090 50215090 C T CPT1C Missense_Mutation p.R631C 0.08 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 19 50303282 50303282 G A AP2A1 Missense_Mutation p.D444N 0.36 deleterious(0.02) possibly_damaging(0.898) TCGA-VQ-A8P2-01 19 50335661 50335661 G A MED25 Missense_Mutation p.G491S 0.24 tolerated(0.42) benign(0.338) TCGA-VQ-A8P2-01 19 50360233 50360233 C T PTOV1 Missense_Mutation p.A187V 0.34 tolerated(0.16) possibly_damaging(0.784) TCGA-VQ-A8P2-01 19 50364474 50364474 G A PNKP 3'UTR 0.43 TCGA-VQ-A8P2-01 19 50374804 50374804 C T AKT1S1 Silent p.P229P 0.40 TCGA-VQ-A8P2-01 19 50392933 50392933 C T IL4I1 Silent p.S588S 0.38 TCGA-VQ-A8P2-01 19 50411876 50411876 G T NUP62 Missense_Mutation p.L397M 0.50 deleterious(0) probably_damaging(0.978) TCGA-VQ-A8P2-01 19 50735220 50735220 G A MYH14 Missense_Mutation p.R336Q 0.31 deleterious(0.01) possibly_damaging(0.657) TCGA-VQ-A8P2-01 19 50774701 50774701 G A MYH14 Silent p.A1023A 0.53 TCGA-VQ-A8P2-01 19 50826970 50826970 G A KCNC3 Missense_Mutation p.R414W 0.40 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 19 50865506 50865506 G T NAPSA Missense_Mutation p.P50T 0.14 tolerated(0.51) benign(0.118) TCGA-VQ-A8P2-01 19 50881674 50881674 G T NR1H2 Missense_Mutation p.K150N 0.55 tolerated(0.1) possibly_damaging(0.484) TCGA-VQ-A8P2-01 19 50926249 50926249 G A SPIB Silent p.P98P 0.38 TCGA-VQ-A8P2-01 19 50926276 50926276 G A SPIB Silent p.T107T 0.17 TCGA-VQ-A8P2-01 19 51020773 51020773 G T LRRC4B 3'UTR 0.32 TCGA-VQ-A8P2-01 19 51021143 51021143 G A LRRC4B Silent p.H609H 0.40 TCGA-VQ-A8P2-01 19 51171744 51171744 A G SHANK1 Missense_Mutation p.I1158T 0.29 unknown(0) TCGA-VQ-A8P2-01 19 51274382 51274382 G A GPR32 Silent p.A175A 0.52 TCGA-VQ-A8P2-01 19 51274905 51274905 C T GPR32 Missense_Mutation p.R350C 0.27 deleterious(0.04) benign(0.196) TCGA-VQ-A8P2-01 19 51330382 51330382 C T KLK15 Missense_Mutation p.R78H 0.45 tolerated(0.13) benign(0.175) TCGA-VQ-A8P2-01 19 51537253 51537253 C T KLK12 Silent p.A60A 0.27 TCGA-VQ-A8P2-01 19 51628872 51628872 A C SIGLEC9 Missense_Mutation p.N147T 0.36 deleterious(0.05) benign(0.039) TCGA-VQ-A8P2-01 19 51827036 51827036 G T IGLON5 Missense_Mutation p.E93D 0.43 tolerated(0.51) benign(0.021) TCGA-VQ-A8P2-01 19 51848576 51848576 G T ETFB Silent p.T310T 0.29 TCGA-VQ-A8P2-01 19 51885738 51885738 C T LIM2 Missense_Mutation p.A129T 0.41 tolerated(0.43) benign(0.114) TCGA-VQ-A8P2-01 19 51920400 51920400 C T SIGLEC10 Silent p.R119R 0.29 TCGA-VQ-A8P2-01 19 51960454 51960454 G T SIGLEC8 Missense_Mutation p.F255L 0.09 tolerated(0.1) benign(0.057) TCGA-VQ-A8P2-01 19 52000645 52000645 G A SIGLEC12 Missense_Mutation p.A487V 0.36 tolerated(0.8) benign(0.015) TCGA-VQ-A8P2-01 19 52091618 52091618 G A ZNF175 Silent p.K678K 0.09 TCGA-VQ-A8P2-01 19 5221021 5221021 C T PTPRS Missense_Mutation p.V1149M 0.51 tolerated(0.18) possibly_damaging(0.657) TCGA-VQ-A8P2-01 19 52222461 52222461 G A HAS1 Nonsense_Mutation p.Q234* 0.09 TCGA-VQ-A8P2-01 19 5222730 5222731 - G PTPRS Frame_Shift_Ins p.V1025Rfs*34 0.39 TCGA-VQ-A8P2-01 19 52249527 52249527 G A FPR1 Missense_Mutation p.R241W 0.15 tolerated(0.11) possibly_damaging(0.458) TCGA-VQ-A8P2-01 19 52272361 52272361 G T FPR2 Missense_Mutation p.W150C 0.35 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 19 52394439 52394439 G T ZNF649 Missense_Mutation p.P317H 0.34 deleterious(0) probably_damaging(0.987) TCGA-VQ-A8P2-01 19 52394602 52394602 C T ZNF649 Missense_Mutation p.G263R 0.41 tolerated(0.63) benign(0.002) TCGA-VQ-A8P2-01 19 52394795 52394795 T C ZNF649 Silent p.R198R 0.12 TCGA-VQ-A8P2-01 19 52519357 52519357 G A ZNF614 Silent p.L498L 0.06 TCGA-VQ-A8P2-01 19 52538070 52538070 G A ZNF432 Missense_Mutation p.P288S 0.35 deleterious(0.04) probably_damaging(0.993) TCGA-VQ-A8P2-01 19 52794326 52794326 A G ZNF766 Missense_Mutation p.N428D 0.46 tolerated(0.63) possibly_damaging(0.484) TCGA-VQ-A8P2-01 19 52954815 52954815 G A ZNF578 5'Flank 0.38 TCGA-VQ-A8P2-01 19 53058348 53058348 A G ZNF808 Missense_Mutation p.R727G 0.46 tolerated(0.06) probably_damaging(0.963) TCGA-VQ-A8P2-01 19 53058467 53058467 C T ZNF808 Silent p.N766N 0.34 TCGA-VQ-A8P2-01 19 53116558 53116558 C T ZNF83 Nonsense_Mutation p.W420* 0.35 TCGA-VQ-A8P2-01 19 53117885 53117885 T C ZNF83 5'UTR 0.37 TCGA-VQ-A8P2-01 19 53208596 53208596 C T ZNF611 Missense_Mutation p.C571Y 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A8P2-01 19 53209717 53209717 G T ZNF611 Silent p.S197S 0.12 TCGA-VQ-A8P2-01 19 53269290 53269290 A G ZNF600 Silent p.R573R 0.11 TCGA-VQ-A8P2-01 19 53453212 53453213 - T ZNF816 Frame_Shift_Ins p.A606Sfs*19 0.32 TCGA-VQ-A8P2-01 19 53453297 53453297 T - ZNF816 Frame_Shift_Del p.G578Efs*116 0.32 TCGA-VQ-A8P2-01 19 53453870 53453870 G A ZNF816 Silent p.C386C 0.33 TCGA-VQ-A8P2-01 19 53454030 53454030 C A ZNF816 Missense_Mutation p.R333I 0.37 tolerated(0.09) benign(0.215) TCGA-VQ-A8P2-01 19 53571974 53571974 G A ZNF160 Missense_Mutation p.R605C 0.41 tolerated(0.18) possibly_damaging(0.59) TCGA-VQ-A8P2-01 19 53652529 53652529 A G ZNF347 Missense_Mutation p.V36A 0.28 deleterious(0) probably_damaging(0.978) TCGA-VQ-A8P2-01 19 53741519 53741519 C T ZNF677 Missense_Mutation p.S154N 0.13 tolerated(0.82) benign(0) TCGA-VQ-A8P2-01 19 54080077 54080077 C T ZNF331 Missense_Mutation p.T88M 0.38 tolerated(0.06) benign(0.14) TCGA-VQ-A8P2-01 19 54209517 54209517 A T MIR526A1 RNA 0.34 TCGA-VQ-A8P2-01 19 54212061 54212061 T G MIR518C RNA 0.40 TCGA-VQ-A8P2-01 19 54242588 54242588 C A MIR518A2 RNA 0.13 TCGA-VQ-A8P2-01 19 54314492 54314492 C T NLRP12 Missense_Mutation p.E141K 0.10 tolerated(0.36) possibly_damaging(0.556) TCGA-VQ-A8P2-01 19 54377604 54377604 C T MYADM Missense_Mutation p.S274L 0.22 tolerated(0.1) benign(0.212) TCGA-VQ-A8P2-01 19 54385758 54385758 C A PRKCG Missense_Mutation p.L4M 0.33 tolerated_low_confidence(0.23) benign(0.195) TCGA-VQ-A8P2-01 19 54418681 54418681 G A CACNG7 Missense_Mutation p.V116I 0.09 tolerated(0.43) benign(0.044) TCGA-VQ-A8P2-01 19 54483186 54483186 T C CACNG8 Missense_Mutation p.C145R 0.40 deleterious(0) probably_damaging(0.965) TCGA-VQ-A8P2-01 19 54611756 54611756 A - NDUFA3 3'Flank 0.30 TCGA-VQ-A8P2-01 19 54649387 54649387 C T CNOT3 Silent p.H179H 0.37 TCGA-VQ-A8P2-01 19 54649502 54649502 G A CNOT3 Missense_Mutation p.D218N 0.42 tolerated(0.13) probably_damaging(0.942) TCGA-VQ-A8P2-01 19 54652004 54652004 G A CNOT3 Missense_Mutation p.G339D 0.40 tolerated(0.32) benign(0.026) TCGA-VQ-A8P2-01 19 54673273 54673273 G A TMC4 Missense_Mutation p.A146V 0.42 tolerated(0.07) benign(0.004) TCGA-VQ-A8P2-01 19 54678101 54678101 G A MBOAT7 Silent p.S352S 0.60 TCGA-VQ-A8P2-01 19 54760846 54760846 G A LILRB5 Silent p.G16G 0.32 TCGA-VQ-A8P2-01 19 54802745 54802745 C T LILRA3 Silent p.P232P 0.21 TCGA-VQ-A8P2-01 19 54848966 54848966 G A LILRA4 Silent p.G219G 0.52 TCGA-VQ-A8P2-01 19 54872719 54872719 T C LAIR1 Silent p.Q56Q 0.48 TCGA-VQ-A8P2-01 19 54963313 54963313 G A LENG8 Missense_Mutation p.G28S 0.16 tolerated_low_confidence(0.14) benign(0.336) TCGA-VQ-A8P2-01 19 54966242 54966242 G T LENG8 Missense_Mutation p.Q264H 0.35 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 19 54969120 54969120 G T LENG8 Missense_Mutation p.G614V 0.28 deleterious(0.01) probably_damaging(0.995) TCGA-VQ-A8P2-01 19 54973216 54973216 T C LENG8 3'UTR 0.40 TCGA-VQ-A8P2-01 19 54973335 54973336 AG - LENG9 Frame_Shift_Del p.W481Afs*16 0.32 TCGA-VQ-A8P2-01 19 55047064 55047064 C T KIR3DX1 Silent p.R203R 0.13 TCGA-VQ-A8P2-01 19 55177730 55177730 C T LILRB4 Missense_Mutation p.A305V 0.36 tolerated(0.38) possibly_damaging(0.543) TCGA-VQ-A8P2-01 19 55282313 55282313 T C KIR2DL1 Missense_Mutation p.L16P 0.44 deleterious(0.02) possibly_damaging(0.815) TCGA-VQ-A8P2-01 19 55301558 55301558 C A CTB-61M7.1 RNA 0.25 TCGA-VQ-A8P2-01 19 55349054 55349054 C T KIR2DS4 Silent p.L32L 0.06 TCGA-VQ-A8P2-01 19 55451248 55451248 C T NLRP7 Silent p.A313A 0.42 TCGA-VQ-A8P2-01 19 55663274 55663274 C T TNNI3 Silent p.E187E 0.37 TCGA-VQ-A8P2-01 19 55710079 55710079 T C PTPRH Missense_Mutation p.Y541C 0.52 probably_damaging(1) TCGA-VQ-A8P2-01 19 55800869 55800869 C T BRSK1 Silent p.V113V 0.40 TCGA-VQ-A8P2-01 19 55815049 55815049 C T BRSK1 Missense_Mutation p.R381C 0.49 deleterious(0) possibly_damaging(0.689) TCGA-VQ-A8P2-01 19 55815422 55815422 C T BRSK1 Missense_Mutation p.R431C 0.42 deleterious(0.02) possibly_damaging(0.689) TCGA-VQ-A8P2-01 19 55899503 55899503 G A RPL28 Intron 0.40 TCGA-VQ-A8P2-01 19 55913075 55913075 G A UBE2S Missense_Mutation p.A133V 0.23 deleterious(0.03) probably_damaging(0.986) TCGA-VQ-A8P2-01 19 55995265 55995265 C A ZNF628 Missense_Mutation p.T902N 0.40 deleterious_low_confidence(0.04) unknown(0) TCGA-VQ-A8P2-01 19 56114036 56114036 G A ZNF524 Silent p.A186A 0.70 TCGA-VQ-A8P2-01 19 56180147 56180147 G A U2AF2 Missense_Mutation p.V312I 0.47 tolerated(0.33) benign(0.003) TCGA-VQ-A8P2-01 19 56243838 56243838 G A NLRP9 Silent p.A453A 0.42 TCGA-VQ-A8P2-01 19 56369912 56369912 G C NLRP4 Missense_Mutation p.A385P 0.35 deleterious(0.04) benign(0.114) TCGA-VQ-A8P2-01 19 56422061 56422061 C A NLRP13 Missense_Mutation p.S717I 0.36 deleterious(0) benign(0.087) TCGA-VQ-A8P2-01 19 56443371 56443371 C A NLRP13 Missense_Mutation p.A103S 0.45 deleterious(0.01) possibly_damaging(0.795) TCGA-VQ-A8P2-01 19 56538982 56538982 C T NLRP5 Silent p.N461N 0.54 TCGA-VQ-A8P2-01 19 56543980 56543980 G A NLRP5 Missense_Mutation p.M760I 0.27 tolerated(0.07) benign(0.13) TCGA-VQ-A8P2-01 19 56600249 56600249 C T ZNF787 Missense_Mutation p.D98N 0.22 deleterious(0) probably_damaging(0.945) TCGA-VQ-A8P2-01 19 56734049 56734049 G A ZSCAN5A Missense_Mutation p.P217L 0.12 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 19 56736257 56736257 C T ZSCAN5A Silent p.P53P 0.38 TCGA-VQ-A8P2-01 19 5687861 5687861 C T HSD11B1L Intron 0.38 TCGA-VQ-A8P2-01 19 56895908 56895908 T C ZNF582 Missense_Mutation p.N293S 0.28 tolerated(0.93) benign(0.228) TCGA-VQ-A8P2-01 19 56901433 56901435 AGG - ZNF582 In_Frame_Del p.S56del 0.32 TCGA-VQ-A8P2-01 19 5696693 5696693 G T LONP1 Silent p.I587I 0.28 TCGA-VQ-A8P2-01 19 57037083 57037083 G A ZNF471 Silent p.G549G 0.37 TCGA-VQ-A8P2-01 19 5705908 5705908 C A LONP1 Missense_Mutation p.K414N 0.41 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8P2-01 19 5708383 5708383 C T LONP1 Missense_Mutation p.R301Q 0.20 deleterious(0.01) probably_damaging(0.944) TCGA-VQ-A8P2-01 19 57133886 57133886 G A ZNF71 Missense_Mutation p.V411M 0.36 deleterious(0.01) benign(0.097) TCGA-VQ-A8P2-01 19 57326585 57326585 G A PEG3 Silent p.S1075S 0.47 TCGA-VQ-A8P2-01 19 57328282 57328282 A G PEG3 Missense_Mutation p.C510R 0.33 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8P2-01 19 57335810 57335810 G T PEG3 Missense_Mutation p.L72I 0.11 deleterious(0.02) possibly_damaging(0.9) TCGA-VQ-A8P2-01 19 57335843 57335843 G A PEG3 Missense_Mutation p.R61W 0.42 deleterious(0.04) benign(0.005) TCGA-VQ-A8P2-01 19 57335952 57335952 G A PEG3 Silent p.D24D 0.47 TCGA-VQ-A8P2-01 19 5751764 5751764 A G CATSPERD Missense_Mutation p.D365G 0.47 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8P2-01 19 57746820 57746820 A G AURKC 3'UTR 0.51 TCGA-VQ-A8P2-01 19 57889207 57889207 G A ZNF547 Missense_Mutation p.R288K 0.43 tolerated(0.2) benign(0.02) TCGA-VQ-A8P2-01 19 57910346 57910346 G A ZNF548 Missense_Mutation p.G243R 0.26 tolerated(0.06) probably_damaging(0.999) TCGA-VQ-A8P2-01 19 57911187 57911187 G A ZNF548 Missense_Mutation p.G523E 0.21 tolerated(0.1) benign(0.018) TCGA-VQ-A8P2-01 19 57984676 57984676 C T ZNF772 Missense_Mutation p.R479H 0.43 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A8P2-01 19 58018773 58018773 A G ZNF773 Missense_Mutation p.H437R 0.43 deleterious(0) probably_damaging(0.984) TCGA-VQ-A8P2-01 19 58038946 58038946 C T ZNF549 Missense_Mutation p.A2V 0.15 deleterious(0.04) benign(0.001) TCGA-VQ-A8P2-01 19 58058670 58058670 G T ZNF550 Silent p.P273P 0.08 TCGA-VQ-A8P2-01 19 580689 580689 C T BSG Silent p.N233N 0.38 TCGA-VQ-A8P2-01 19 58083350 58083350 G A ZNF416 3'UTR 0.44 TCGA-VQ-A8P2-01 19 58084992 58084992 G A ZNF416 Missense_Mutation p.P94S 0.42 tolerated(0.55) benign(0.01) TCGA-VQ-A8P2-01 19 58117963 58117963 G A ZNF530 Missense_Mutation p.G357E 0.21 tolerated(0.07) probably_damaging(0.932) TCGA-VQ-A8P2-01 19 58131861 58131861 C A ZNF134 Missense_Mutation p.P125H 0.17 tolerated(0.54) possibly_damaging(0.817) TCGA-VQ-A8P2-01 19 58265517 58265517 G A ZNF776 Missense_Mutation p.R340Q 0.34 deleterious(0.02) possibly_damaging(0.689) TCGA-VQ-A8P2-01 19 58290579 58290579 C T ZNF586 Silent p.C208C 0.10 TCGA-VQ-A8P2-01 19 58384225 58384225 C T ZNF814 Missense_Mutation p.V845I 0.43 tolerated(0.4) benign(0) TCGA-VQ-A8P2-01 19 58420032 58420032 G A ZNF417 Silent p.H538H 0.32 TCGA-VQ-A8P2-01 19 58563962 58563962 G A ZSCAN1 Silent p.A190A 0.76 TCGA-VQ-A8P2-01 19 58578313 58578313 C T ZNF135 Missense_Mutation p.T178M 0.39 deleterious(0.05) possibly_damaging(0.742) TCGA-VQ-A8P2-01 19 58773202 58773202 T C ZNF544 Silent p.C410C 0.15 TCGA-VQ-A8P2-01 19 58773203 58773203 G A ZNF544 Missense_Mutation p.D411N 0.13 tolerated(1) benign(0.001) TCGA-VQ-A8P2-01 19 58773442 58773442 A G ZNF544 Silent p.K490K 0.31 TCGA-VQ-A8P2-01 19 58773449 58773449 A G ZNF544 Missense_Mutation p.K493E 0.26 tolerated(0.79) benign(0.003) TCGA-VQ-A8P2-01 19 58797092 58797092 A G ZNF8 Missense_Mutation p.T26A 0.39 deleterious(0.05) probably_damaging(0.998) TCGA-VQ-A8P2-01 19 58863827 58863827 A G A1BG Silent p.G145G 0.07 TCGA-VQ-A8P2-01 19 58868289 58868289 C T ZNF497 Missense_Mutation p.R238H 0.40 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8P2-01 19 58992077 58992077 G A ZNF446 Missense_Mutation p.R446Q 0.11 tolerated(0.57) benign(0.003) TCGA-VQ-A8P2-01 19 59028110 59028110 C T ZBTB45 Missense_Mutation p.D311N 0.28 tolerated(0.11) probably_damaging(0.996) TCGA-VQ-A8P2-01 19 59060484 59060484 C T TRIM28 Silent p.T513T 0.41 TCGA-VQ-A8P2-01 19 59062947 59062948 TT - CHMP2A 3'UTR 0.30 TCGA-VQ-A8P2-01 19 613485 613485 G A HCN2 Missense_Mutation p.G608R 0.09 deleterious(0.01) probably_damaging(0.998) TCGA-VQ-A8P2-01 19 6141603 6141603 G A ACSBG2 Missense_Mutation p.D17N 0.28 tolerated(0.09) benign(0.003) TCGA-VQ-A8P2-01 19 6177362 6177362 A G ACSBG2 Missense_Mutation p.I287M 0.15 tolerated(0.62) benign(0.101) TCGA-VQ-A8P2-01 19 620447 620447 G A POLRMT Missense_Mutation p.T894M 0.30 deleterious(0.01) probably_damaging(0.954) TCGA-VQ-A8P2-01 19 6306758 6306758 G A ACER1 Silent p.Y254Y 0.11 TCGA-VQ-A8P2-01 19 6309783 6309783 C T ACER1 Missense_Mutation p.R138Q 0.37 deleterious(0.01) benign(0.028) TCGA-VQ-A8P2-01 19 6366288 6366288 C T CLPP Missense_Mutation p.A192V 0.45 tolerated(0.13) benign(0.084) TCGA-VQ-A8P2-01 19 6389625 6389625 G A GTF2F1 Silent p.S52S 0.22 TCGA-VQ-A8P2-01 19 6416504 6416504 G A KHSRP Silent p.I495I 0.48 TCGA-VQ-A8P2-01 19 6417768 6417768 G A KHSRP Missense_Mutation p.R355W 0.50 deleterious(0) probably_damaging(0.968) TCGA-VQ-A8P2-01 19 6457519 6457519 C T SLC25A23 Silent p.L122L 0.45 TCGA-VQ-A8P2-01 19 6465571 6465571 C T CRB3 Missense_Mutation p.A33V 0.30 tolerated(0.35) benign(0.031) TCGA-VQ-A8P2-01 19 6496182 6496182 C T TUBB4A Missense_Mutation p.A110T 0.25 tolerated_low_confidence(0.05) possibly_damaging(0.77) TCGA-VQ-A8P2-01 19 6743084 6743084 C T TRIP10 Silent p.L102L 0.43 TCGA-VQ-A8P2-01 19 6754119 6754119 G A SH2D3A Missense_Mutation p.A443V 0.33 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 19 6821672 6821672 G A VAV1 Missense_Mutation p.A121T 0.50 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 19 6986354 6986354 A C EMR4P RNA 0.27 TCGA-VQ-A8P2-01 19 7152781 7152781 C T INSR Silent p.R729R 0.42 TCGA-VQ-A8P2-01 19 7605561 7605561 G A PNPLA6 Missense_Mutation p.V263I 0.43 tolerated(0.15) benign(0.38) TCGA-VQ-A8P2-01 19 7614946 7614946 C T PNPLA6 Nonsense_Mutation p.R597* 0.38 TCGA-VQ-A8P2-01 19 7712299 7712299 G A STXBP2 Missense_Mutation p.R533Q 0.09 deleterious(0.03) benign(0.148) TCGA-VQ-A8P2-01 19 7735187 7735187 C T RETN Silent p.C93C 0.40 TCGA-VQ-A8P2-01 19 7918048 7918048 A G EVI5L Missense_Mutation p.Y355C 0.21 deleterious(0) possibly_damaging(0.873) TCGA-VQ-A8P2-01 19 7975620 7975620 G A MAP2K7 Missense_Mutation p.A203T 0.38 deleterious(0.01) possibly_damaging(0.617) TCGA-VQ-A8P2-01 19 7976183 7976183 C T MAP2K7 Missense_Mutation p.R302W 0.33 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 19 7977201 7977201 G A MAP2K7 Missense_Mutation p.R382H 0.09 tolerated(0.11) benign(0.022) TCGA-VQ-A8P2-01 19 8138130 8138130 C T FBN3 Missense_Mutation p.R2585H 0.26 tolerated(0.88) benign(0.001) TCGA-VQ-A8P2-01 19 8148184 8148184 C T FBN3 Missense_Mutation p.R2387H 0.51 tolerated(0.2) benign(0.018) TCGA-VQ-A8P2-01 19 8186194 8186194 G A FBN3 Silent p.C1053C 0.26 TCGA-VQ-A8P2-01 19 829590 829590 G A AZU1 Missense_Mutation p.G82S 0.13 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 19 8398033 8398033 G T KANK3 Missense_Mutation p.L601M 0.49 deleterious(0) possibly_damaging(0.82) TCGA-VQ-A8P2-01 19 8464794 8464794 C T RAB11B Missense_Mutation p.R30C 0.34 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-VQ-A8P2-01 19 8468388 8468388 G A RAB11B Silent p.P201P 0.35 TCGA-VQ-A8P2-01 19 8536212 8536212 G A HNRNPM Missense_Mutation p.G300S 0.60 deleterious(0) possibly_damaging(0.849) TCGA-VQ-A8P2-01 19 8551060 8551060 G A HNRNPM Missense_Mutation p.R583H 0.31 tolerated(0.07) benign(0.003) TCGA-VQ-A8P2-01 19 8551140 8551140 G A HNRNPM Missense_Mutation p.A610T 0.41 deleterious(0.04) benign(0.344) TCGA-VQ-A8P2-01 19 8592229 8592229 A G MYO1F Missense_Mutation p.S823P 0.15 deleterious(0.01) possibly_damaging(0.781) TCGA-VQ-A8P2-01 19 8615553 8615553 G A MYO1F Missense_Mutation p.P266L 0.39 tolerated(0.27) benign(0.005) TCGA-VQ-A8P2-01 19 8651467 8651467 G A ADAMTS10 Missense_Mutation p.P793L 0.40 deleterious(0.02) probably_damaging(0.964) TCGA-VQ-A8P2-01 19 8654406 8654406 G A ADAMTS10 Missense_Mutation p.A655V 0.46 deleterious(0.01) possibly_damaging(0.856) TCGA-VQ-A8P2-01 19 8656904 8656904 G A ADAMTS10 Silent p.G557G 0.30 TCGA-VQ-A8P2-01 19 875247 875247 C T MED16 Missense_Mutation p.V590I 0.46 tolerated(0.3) benign(0.312) TCGA-VQ-A8P2-01 19 8808992 8808992 G A ACTL9 Silent p.P20P 0.41 TCGA-VQ-A8P2-01 19 8841905 8841905 G A OR2Z1 Missense_Mutation p.R172H 0.08 tolerated(0.17) benign(0.034) TCGA-VQ-A8P2-01 19 8953551 8953551 G A MBD3L1 Missense_Mutation p.C66Y 0.44 tolerated(0.25) benign(0.003) TCGA-VQ-A8P2-01 19 8969292 8969293 - T MUC16 Frame_Shift_Ins p.R14351Kfs*4 0.33 TCGA-VQ-A8P2-01 19 9046002 9046002 A C MUC16 Missense_Mutation p.L11877V 0.10 benign(0.007) TCGA-VQ-A8P2-01 19 9062575 9062575 A - MUC16 Frame_Shift_Del p.S8291Pfs*6 0.28 TCGA-VQ-A8P2-01 19 9064774 9064774 C A MUC16 Nonsense_Mutation p.E7558* 0.43 TCGA-VQ-A8P2-01 19 9065472 9065472 G A MUC16 Missense_Mutation p.T7325I 0.35 unknown(0) TCGA-VQ-A8P2-01 19 9085221 9085221 C A MUC16 Missense_Mutation p.K2198N 0.50 unknown(0) TCGA-VQ-A8P2-01 19 9324666 9324666 G A OR7D4 Missense_Mutation p.P283L 0.31 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 19 9449879 9449879 C T ZNF559 Missense_Mutation p.T15I 0.38 deleterious(0) probably_damaging(0.961) TCGA-VQ-A8P2-01 19 9577218 9577218 T G ZNF560 3'UTR 0.34 TCGA-VQ-A8P2-01 19 9577406 9577406 G A ZNF560 Silent p.P739P 0.37 TCGA-VQ-A8P2-01 19 9578885 9578885 C T ZNF560 Silent p.Q246Q 0.40 TCGA-VQ-A8P2-01 19 9639398 9639398 C T ZNF426 Silent p.T441T 0.37 TCGA-VQ-A8P2-01 19 9676986 9676986 G T ZNF121 Missense_Mutation p.S268Y 0.36 deleterious(0.01) possibly_damaging(0.753) TCGA-VQ-A8P2-01 19 9677250 9677250 C T ZNF121 Missense_Mutation p.C180Y 0.31 deleterious(0) benign(0.236) TCGA-VQ-A8P2-01 19 9727787 9727787 C T ZNF561 Missense_Mutation p.D59N 0.32 tolerated(0.12) probably_damaging(0.995) TCGA-VQ-A8P2-01 19 9764327 9764327 C T ZNF562 Silent p.V193V 0.48 TCGA-VQ-A8P2-01 19 985937 985937 G A WDR18 Missense_Mutation p.V95I 0.36 tolerated(0.62) benign(0.009) TCGA-VQ-A8P2-01 19 9868889 9868889 C T ZNF846 Silent p.G288G 0.37 TCGA-VQ-A8P2-01 1 100329992 100329992 T C AGL Missense_Mutation p.S171P 0.40 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8P2-01 1 100340251 100340251 C T AGL Nonsense_Mutation p.R323* 0.32 TCGA-VQ-A8P2-01 1 10042598 10042598 C T NMNAT1 Missense_Mutation p.R227W 0.12 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 1 100534034 100534034 A - HIAT1 Frame_Shift_Del p.V240Sfs*6 0.34 TCGA-VQ-A8P2-01 1 100928422 100928422 G A CDC14A Missense_Mutation p.A275T 0.43 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8P2-01 1 100933652 100933652 T C CDC14A Splice_Site p.X326_splice 0.39 TCGA-VQ-A8P2-01 1 101194929 101194929 G A VCAM1 Missense_Mutation p.E399K 0.08 tolerated(0.78) benign(0.008) TCGA-VQ-A8P2-01 1 102270375 102270375 G T OLFM3 Missense_Mutation p.L266I 0.49 deleterious(0) probably_damaging(0.994) TCGA-VQ-A8P2-01 1 10239477 10239477 C A UBE4B Missense_Mutation p.P1235H 0.13 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 1 103548496 103548496 A G COL11A1 Missense_Mutation p.F47L 0.32 probably_damaging(0.998) TCGA-VQ-A8P2-01 1 10355741 10355741 G A KIF1B Missense_Mutation p.R519Q 0.42 tolerated(0.57) benign(0.213) TCGA-VQ-A8P2-01 1 10364109 10364109 C T KIF1B Intron 0.14 TCGA-VQ-A8P2-01 1 104297217 104297217 C A AMY1C Silent p.A325A 0.15 TCGA-VQ-A8P2-01 1 10473127 10473127 G T PGD Missense_Mutation p.E221D 0.28 tolerated(0.56) benign(0) TCGA-VQ-A8P2-01 1 10510022 10510022 C T CORT 5'UTR 0.13 TCGA-VQ-A8P2-01 1 10596274 10596274 C T PEX14 Missense_Mutation p.A30V 0.34 tolerated(0.24) benign(0.032) TCGA-VQ-A8P2-01 1 10678391 10678391 C T PEX14 Missense_Mutation p.P101S 0.41 tolerated(0.2) benign(0.303) TCGA-VQ-A8P2-01 1 107979393 107979393 G A NTNG1 Silent p.P454P 0.15 TCGA-VQ-A8P2-01 1 108115973 108115973 A G VAV3 Missense_Mutation p.Y842H 0.53 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 1 109271508 109271508 G T FNDC7 Missense_Mutation p.V542L 0.40 tolerated(0.06) benign(0.005) TCGA-VQ-A8P2-01 1 109276025 109276026 - C FNDC7 Frame_Shift_Ins p.S673Efs*8 0.30 TCGA-VQ-A8P2-01 1 109369861 109369861 A G AKNAD1 Silent p.L634L 0.07 TCGA-VQ-A8P2-01 1 109377679 109377679 C T AKNAD1 Splice_Site p.X513_splice 0.26 TCGA-VQ-A8P2-01 1 109392199 109392199 C T AKNAD1 Splice_Site p.X332_splice 0.40 TCGA-VQ-A8P2-01 1 109529217 109529217 C A WDR47 Missense_Mutation p.G626V 0.41 deleterious(0) possibly_damaging(0.678) TCGA-VQ-A8P2-01 1 109707266 109707266 C T KIAA1324 Silent p.N140N 0.45 TCGA-VQ-A8P2-01 1 109793045 109793045 G A CELSR2 Missense_Mutation p.R115H 0.44 deleterious_low_confidence(0.02) benign(0.12) TCGA-VQ-A8P2-01 1 109794329 109794329 G A CELSR2 Missense_Mutation p.R543H 0.35 deleterious(0.04) benign(0.322) TCGA-VQ-A8P2-01 1 109801551 109801551 G A CELSR2 Missense_Mutation p.G1270R 0.27 tolerated(0.06) benign(0.102) TCGA-VQ-A8P2-01 1 109803696 109803696 C T CELSR2 Missense_Mutation p.R1331C 0.15 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 1 109849650 109849650 T A MYBPHL 5'UTR 0.25 TCGA-VQ-A8P2-01 1 110035244 110035244 C T ATXN7L2 3'UTR 0.17 TCGA-VQ-A8P2-01 1 110038942 110038942 G A CYB561D1 3'UTR 0.16 TCGA-VQ-A8P2-01 1 110125064 110125064 T C GNAI3 Missense_Mutation p.L156P 0.45 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8P2-01 1 110168244 110168244 C T AMPD2 Intron 0.23 TCGA-VQ-A8P2-01 1 110259905 110259905 C T GSTM5 Intron 0.39 TCGA-VQ-A8P2-01 1 110301263 110301263 G A EPS8L3 Missense_Mutation p.P163S 0.42 tolerated(0.21) benign(0.032) TCGA-VQ-A8P2-01 1 110302391 110302391 A G EPS8L3 Missense_Mutation p.F55S 0.08 deleterious(0.01) benign(0.012) TCGA-VQ-A8P2-01 1 110467797 110467797 G A CSF1 Missense_Mutation p.E551K 0.47 deleterious(0) probably_damaging(0.967) TCGA-VQ-A8P2-01 1 110587689 110587689 A G STRIP1 Missense_Mutation p.T469A 0.25 tolerated(0.19) probably_damaging(0.989) TCGA-VQ-A8P2-01 1 11097752 11097752 G A MASP2 Nonsense_Mutation p.Q336* 0.46 TCGA-VQ-A8P2-01 1 111060243 111060243 G T KCNA10 Missense_Mutation p.F389L 0.37 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 1 111146758 111146758 G A KCNA2 Missense_Mutation p.T216I 0.49 tolerated(0.25) benign(0.003) TCGA-VQ-A8P2-01 1 111216938 111216938 G T KCNA3 Missense_Mutation p.S165Y 0.10 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 1 11132173 11132173 G A EXOSC10 Missense_Mutation p.A738V 0.35 tolerated(0.24) benign(0.009) TCGA-VQ-A8P2-01 1 111439277 111439277 G A CD53 Silent p.L142L 0.33 TCGA-VQ-A8P2-01 1 111492482 111492482 C A LRIF1 Missense_Mutation p.E620D 0.37 tolerated(0.14) possibly_damaging(0.801) TCGA-VQ-A8P2-01 1 111668860 111668860 G A DRAM2 Missense_Mutation p.A63V 0.07 deleterious(0.03) benign(0.407) TCGA-VQ-A8P2-01 1 111690484 111690484 C T CEPT1 Missense_Mutation p.R50W 0.41 deleterious(0) probably_damaging(0.993) TCGA-VQ-A8P2-01 1 111889655 111889655 G T PIFO Missense_Mutation p.G48V 0.40 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 1 1119315 1119315 G A TTLL10 Silent p.P368P 0.39 TCGA-VQ-A8P2-01 1 111957043 111957043 A G OVGP1 3'UTR 0.40 TCGA-VQ-A8P2-01 1 111962293 111962293 G A OVGP1 Missense_Mutation p.P320L 0.40 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 1 112045664 112045664 C T ADORA3 Missense_Mutation p.A105T 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.825) TCGA-VQ-A8P2-01 1 112240090 112240090 A T RAP1A Missense_Mutation p.M52L 0.07 tolerated(0.72) benign(0.027) TCGA-VQ-A8P2-01 1 112298321 112298321 A G DDX20 5'UTR 0.25 TCGA-VQ-A8P2-01 1 112524397 112524397 C T KCND3 Missense_Mutation p.A318T 0.44 tolerated(0.06) possibly_damaging(0.787) TCGA-VQ-A8P2-01 1 112524591 112524591 C T KCND3 Missense_Mutation p.R253H 0.36 deleterious(0.02) possibly_damaging(0.812) TCGA-VQ-A8P2-01 1 112525239 112525239 C T KCND3 Missense_Mutation p.R37Q 0.30 tolerated(0.13) benign(0.001) TCGA-VQ-A8P2-01 1 11254692 11254692 G A ANGPTL7 Missense_Mutation p.D283N 0.40 tolerated(0.21) probably_damaging(0.995) TCGA-VQ-A8P2-01 1 11255064 11255064 A G ANGPTL7 Missense_Mutation p.E342G 0.57 tolerated(0.26) benign(0.438) TCGA-VQ-A8P2-01 1 112998888 112998888 C T CTTNBP2NL Silent p.N258N 0.54 TCGA-VQ-A8P2-01 1 113059864 113059864 G A WNT2B Missense_Mutation p.R268H 0.40 deleterious(0) probably_damaging(0.909) TCGA-VQ-A8P2-01 1 11313957 11313957 C T MTOR Missense_Mutation p.R260Q 0.13 tolerated(0.29) benign(0.227) TCGA-VQ-A8P2-01 1 113264891 113264891 C T FAM19A3 Silent p.G12G 0.30 TCGA-VQ-A8P2-01 1 113460027 113460027 G A SLC16A1 Missense_Mutation p.A334V 0.29 deleterious(0) probably_damaging(0.929) TCGA-VQ-A8P2-01 1 113638926 113638926 G T LRIG2 Missense_Mutation p.D344Y 0.12 tolerated(0.09) benign(0.105) TCGA-VQ-A8P2-01 1 114242393 114242393 T - PHTF1 Frame_Shift_Del p.K692Sfs*10 0.32 TCGA-VQ-A8P2-01 1 114243416 114243416 C A PHTF1 Missense_Mutation p.Q682H 0.35 deleterious(0) probably_damaging(0.984) TCGA-VQ-A8P2-01 1 114301306 114301307 TC - PHTF1 Frame_Shift_Del p.D7Cfs*27 0.29 TCGA-VQ-A8P2-01 1 114442568 114442568 C A AP4B1 Missense_Mutation p.D358Y 0.37 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 1 114449708 114449708 C A DCLRE1B Missense_Mutation p.L94I 0.26 deleterious(0.01) probably_damaging(0.968) TCGA-VQ-A8P2-01 1 114454045 114454045 C A DCLRE1B Silent p.S277S 0.40 TCGA-VQ-A8P2-01 1 114483032 114483032 G A HIPK1 Silent p.S9S 0.41 TCGA-VQ-A8P2-01 1 114523730 114523730 G A OLFML3 Missense_Mutation p.R187H 0.47 tolerated(0.11) probably_damaging(0.986) TCGA-VQ-A8P2-01 1 114523758 114523758 G A OLFML3 Silent p.R196R 0.32 TCGA-VQ-A8P2-01 1 114940217 114940217 T G TRIM33 3'UTR 0.40 TCGA-VQ-A8P2-01 1 114968115 114968116 - TGT TRIM33 In_Frame_Ins p.T550dup 0.29 TCGA-VQ-A8P2-01 1 115130354 115130354 C T DENND2C Missense_Mutation p.R884Q 0.40 deleterious(0) possibly_damaging(0.765) TCGA-VQ-A8P2-01 1 115226928 115226928 G A AMPD1 Missense_Mutation p.R180C 0.40 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 1 1153899 1153899 T - SDF4 Frame_Shift_Del p.K284Rfs*15 0.32 TCGA-VQ-A8P2-01 1 115417148 115417148 C T SYCP1 Missense_Mutation p.T207I 0.06 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 1 115428837 115428837 C T SYCP1 Missense_Mutation p.S366F 0.25 tolerated(0.7) benign(0.001) TCGA-VQ-A8P2-01 1 115537676 115537676 C T SYCP1 3'UTR 0.19 TCGA-VQ-A8P2-01 1 11561402 11561402 G A PTCHD2 Missense_Mutation p.R118H 0.39 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-VQ-A8P2-01 1 11575545 11575545 G A PTCHD2 Missense_Mutation p.V525M 0.34 deleterious(0) probably_damaging(0.982) TCGA-VQ-A8P2-01 1 115829176 115829176 G A NGF Nonsense_Mutation p.R81* 0.24 TCGA-VQ-A8P2-01 1 11591741 11591741 C T PTCHD2 Nonsense_Mutation p.Q1117* 0.41 TCGA-VQ-A8P2-01 1 116268164 116268164 G A CASQ2 Missense_Mutation p.R250C 0.43 deleterious(0) probably_damaging(0.973) TCGA-VQ-A8P2-01 1 116380564 116380564 G C NHLH2 3'UTR 0.36 TCGA-VQ-A8P2-01 1 1163881 1163881 C T SDF4 Missense_Mutation p.R98Q 0.48 tolerated(0.31) benign(0.035) TCGA-VQ-A8P2-01 1 116609275 116609275 G A SLC22A15 Silent p.S500S 0.47 TCGA-VQ-A8P2-01 1 116939310 116939310 G T ATP1A1 Missense_Mutation p.D643Y 0.52 deleterious(0) probably_damaging(0.954) TCGA-VQ-A8P2-01 1 116943622 116943622 G T ATP1A1 Missense_Mutation p.Q904H 0.39 deleterious(0.01) probably_damaging(0.99) TCGA-VQ-A8P2-01 1 11728893 11728893 C T FBXO6 Nonsense_Mutation p.R60* 0.28 TCGA-VQ-A8P2-01 1 11734777 11734777 C T MAD2L2 3'UTR 0.36 TCGA-VQ-A8P2-01 1 117484638 117484638 C T PTGFRN Silent p.Y117Y 0.44 TCGA-VQ-A8P2-01 1 117568416 117568416 G A CD101 Missense_Mutation p.G905E 0.11 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 1 117576656 117576656 A G CD101 Missense_Mutation p.D1000G 0.50 tolerated(0.49) benign(0.004) TCGA-VQ-A8P2-01 1 117618232 117618232 T C TTF2 Silent p.G342G 0.36 TCGA-VQ-A8P2-01 1 11775244 11775244 G A DRAXIN Missense_Mutation p.D306N 0.41 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 1 11779697 11779697 C T DRAXIN Missense_Mutation p.R332C 0.39 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 1 118165876 118165876 T A FAM46C Missense_Mutation p.I129N 0.37 deleterious(0.03) probably_damaging(0.998) TCGA-VQ-A8P2-01 1 118617201 118617201 G A SPAG17 Silent p.I744I 0.42 TCGA-VQ-A8P2-01 1 118634280 118634280 A G SPAG17 Silent p.I436I 0.16 TCGA-VQ-A8P2-01 1 119469235 119469235 C A TBX15 Splice_Site p.X34_splice 0.49 TCGA-VQ-A8P2-01 1 119575767 119575767 C T WARS2 Missense_Mutation p.G284R 0.40 tolerated(0.05) benign(0.199) TCGA-VQ-A8P2-01 1 11983512 11983512 C T KIAA2013 Silent p.T356T 0.44 TCGA-VQ-A8P2-01 1 119927488 119927488 C T HAO2 Nonsense_Mutation p.R125* 0.43 TCGA-VQ-A8P2-01 1 119965219 119965219 G T HSD3B2 Missense_Mutation p.E365D 0.40 tolerated(0.21) benign(0.345) TCGA-VQ-A8P2-01 1 120056674 120056674 C T HSD3B1 Silent p.N176N 0.10 TCGA-VQ-A8P2-01 1 120166594 120166594 A G ZNF697 Silent p.A124A 0.69 TCGA-VQ-A8P2-01 1 120278010 120278010 C A PHGDH Missense_Mutation p.L246I 0.28 deleterious(0.02) possibly_damaging(0.878) TCGA-VQ-A8P2-01 1 120285539 120285539 G A PHGDH Missense_Mutation p.G440D 0.33 tolerated(0.16) benign(0.038) TCGA-VQ-A8P2-01 1 120306915 120306915 C T HMGCS2 Missense_Mutation p.E147K 0.32 deleterious(0.03) benign(0.394) TCGA-VQ-A8P2-01 1 120345675 120345675 G A REG4 Intron 0.09 TCGA-VQ-A8P2-01 1 120437439 120437439 G A ADAM30 Silent p.C507C 0.34 TCGA-VQ-A8P2-01 1 120437587 120437587 C T ADAM30 Missense_Mutation p.R458K 0.46 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 1 120539910 120539910 G A NOTCH2 Missense_Mutation p.A154V 0.35 tolerated(0.07) benign(0.012) TCGA-VQ-A8P2-01 1 12089888 12089888 G A MIIP Missense_Mutation p.R261H 0.44 tolerated(0.13) probably_damaging(0.969) TCGA-VQ-A8P2-01 1 12202501 12202501 G A TNFRSF8 Silent p.P567P 0.33 TCGA-VQ-A8P2-01 1 12337668 12337668 G A VPS13D Silent p.S1341S 0.36 TCGA-VQ-A8P2-01 1 12387823 12387823 C T VPS13D Silent p.G2703G 0.07 TCGA-VQ-A8P2-01 1 1263048 1263048 G A GLTPD1 Missense_Mutation p.V184M 0.09 deleterious(0.03) benign(0.179) TCGA-VQ-A8P2-01 1 12779672 12779672 G - AADACL3 Frame_Shift_Del p.G66Afs*6 0.24 TCGA-VQ-A8P2-01 1 1290110 1290110 G - MXRA8 Frame_Shift_Del p.R301Gfs*107 0.32 TCGA-VQ-A8P2-01 1 12939886 12939886 A G PRAMEF4 Missense_Mutation p.C306R 0.37 deleterious(0) probably_damaging(0.923) TCGA-VQ-A8P2-01 1 12942042 12942042 G T PRAMEF4 Missense_Mutation p.L170I 0.35 tolerated(0.84) possibly_damaging(0.547) TCGA-VQ-A8P2-01 1 12954559 12954559 C T PRAMEF10 Missense_Mutation p.G242S 0.22 tolerated(0.74) benign(0.013) TCGA-VQ-A8P2-01 1 1325613 1325613 G T CCNL2 Missense_Mutation p.L335M 0.37 tolerated(0.11) benign(0.008) TCGA-VQ-A8P2-01 1 1330888 1330888 G A CCNL2 Silent p.P160P 0.40 TCGA-VQ-A8P2-01 1 1337429 1337429 C T MRPL20 3'UTR 0.41 TCGA-VQ-A8P2-01 1 13475123 13475123 G A PRAMEF18 Missense_Mutation p.R336C 0.34 deleterious(0.04) possibly_damaging(0.609) TCGA-VQ-A8P2-01 1 13475131 13475131 C T PRAMEF18 Missense_Mutation p.R333H 0.49 tolerated(0.06) benign(0.417) TCGA-VQ-A8P2-01 1 14057546 14057546 C T PRDM2 Missense_Mutation p.H21Y 0.46 probably_damaging(0.982) TCGA-VQ-A8P2-01 1 14105221 14105221 C T PRDM2 Missense_Mutation p.R311W 0.44 probably_damaging(0.948) TCGA-VQ-A8P2-01 1 14107143 14107143 G A PRDM2 Silent p.L951L 0.36 TCGA-VQ-A8P2-01 1 14107397 14107397 C T PRDM2 Missense_Mutation p.P1036L 0.33 unknown(0) TCGA-VQ-A8P2-01 1 14108837 14108837 G A PRDM2 Missense_Mutation p.R1516Q 0.44 unknown(0) TCGA-VQ-A8P2-01 1 14109219 14109219 G A PRDM2 Silent p.E1643E 0.23 TCGA-VQ-A8P2-01 1 142713642 142713642 A G RP11-417J8.6 RNA 0.19 TCGA-VQ-A8P2-01 1 143767621 143767621 C T PPIAL4G Silent p.K76K 0.35 TCGA-VQ-A8P2-01 1 144931146 144931146 C T PDE4DIP Intron 0.24 TCGA-VQ-A8P2-01 1 144994715 144994715 C T PDE4DIP Missense_Mutation p.R6H 0.19 deleterious(0) possibly_damaging(0.855) TCGA-VQ-A8P2-01 1 145075822 145075822 C T PDE4DIP Missense_Mutation p.C14Y 0.09 tolerated_low_confidence(0.37) benign(0) TCGA-VQ-A8P2-01 1 145473989 145473989 C - ANKRD34A Frame_Shift_Del p.D223Mfs*30 0.32 TCGA-VQ-A8P2-01 1 145532523 145532523 G A ITGA10 Missense_Mutation p.A326T 0.12 deleterious(0) probably_damaging(0.985) TCGA-VQ-A8P2-01 1 145533448 145533448 G A ITGA10 Missense_Mutation p.R444H 0.13 tolerated(0.11) benign(0.028) TCGA-VQ-A8P2-01 1 145537735 145537736 AG - ITGA10 Splice_Site p.X861_splice 0.32 TCGA-VQ-A8P2-01 1 145537742 145537742 G A ITGA10 Silent p.E860E 0.46 TCGA-VQ-A8P2-01 1 145585597 145585597 G A PIAS3 Missense_Mutation p.R621Q 0.41 tolerated_low_confidence(0.06) benign(0.397) TCGA-VQ-A8P2-01 1 146658807 146658807 C T FMO5 Missense_Mutation p.R425H 0.33 tolerated(0.07) benign(0.273) TCGA-VQ-A8P2-01 1 146747785 146747785 G A CHD1L Missense_Mutation p.R468Q 0.12 deleterious(0) probably_damaging(0.987) TCGA-VQ-A8P2-01 1 146751857 146751857 G T CHD1L Missense_Mutation p.E566D 0.55 tolerated(0.2) benign(0.003) TCGA-VQ-A8P2-01 1 146758036 146758036 C T CHD1L Missense_Mutation p.P694S 0.34 tolerated(0.69) benign(0.001) TCGA-VQ-A8P2-01 1 147090630 147090630 G T BCL9 Missense_Mutation p.Q223H 0.35 tolerated(0.2) possibly_damaging(0.862) TCGA-VQ-A8P2-01 1 147091598 147091598 C T BCL9 Missense_Mutation p.P546L 0.30 tolerated(0.11) probably_damaging(0.992) TCGA-VQ-A8P2-01 1 147230281 147230281 G A GJA5 Silent p.L356L 0.44 TCGA-VQ-A8P2-01 1 147230791 147230791 G A GJA5 Missense_Mutation p.R186C 0.40 deleterious(0.03) possibly_damaging(0.892) TCGA-VQ-A8P2-01 1 147380982 147380982 C T GJA8 Silent p.F300F 0.12 TCGA-VQ-A8P2-01 1 148010126 148010126 G A NBPF14 Missense_Mutation p.P599S 0.11 deleterious(0.04) unknown(0) TCGA-VQ-A8P2-01 1 1480264 1480265 CT - SSU72 Frame_Shift_Del p.R114Sfs*3 0.31 TCGA-VQ-A8P2-01 1 149755781 149755781 G A FCGR1A Missense_Mutation p.R92Q 0.39 tolerated(0.07) benign(0.001) TCGA-VQ-A8P2-01 1 149763015 149763015 A - FCGR1A Frame_Shift_Del p.E358Kfs*58 0.27 TCGA-VQ-A8P2-01 1 149878277 149878277 C T SV2A Missense_Mutation p.G604R 0.35 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 1 149916399 149916399 C T OTUD7B Missense_Mutation p.R630H 0.38 tolerated(0.31) possibly_damaging(0.88) TCGA-VQ-A8P2-01 1 150203029 150203029 C T ANP32E Splice_Site p.X69_splice 0.49 TCGA-VQ-A8P2-01 1 150245201 150245201 G T C1orf54 Splice_Site 0.38 TCGA-VQ-A8P2-01 1 150255925 150255925 G A C1orf51 Missense_Mutation p.R83Q 0.43 tolerated(0.15) benign(0.011) TCGA-VQ-A8P2-01 1 150266811 150266811 G A MRPS21 Missense_Mutation p.A9T 0.32 probably_damaging(0.933) TCGA-VQ-A8P2-01 1 150305652 150305652 C A PRPF3 Missense_Mutation p.A237D 0.25 tolerated(0.16) benign(0.005) TCGA-VQ-A8P2-01 1 150463135 150463135 C A TARS2 Missense_Mutation p.A149D 0.54 deleterious(0.01) probably_damaging(0.974) TCGA-VQ-A8P2-01 1 150477184 150477184 C T TARS2 Silent p.L599L 0.09 TCGA-VQ-A8P2-01 1 150480744 150480744 C T ECM1 Missense_Mutation p.A20V 0.40 deleterious_low_confidence(0.02) benign(0.076) TCGA-VQ-A8P2-01 1 150724289 150724289 C T CTSS Missense_Mutation p.D199N 0.11 deleterious(0.03) possibly_damaging(0.538) TCGA-VQ-A8P2-01 1 150769317 150769317 G A CTSK Silent p.N316N 0.38 TCGA-VQ-A8P2-01 1 150776623 150776623 G A CTSK Silent p.P164P 0.43 TCGA-VQ-A8P2-01 1 150801604 150801604 G A ARNT Missense_Mutation p.H378Y 0.49 tolerated(0.13) benign(0.026) TCGA-VQ-A8P2-01 1 150933590 150933590 C T SETDB1 Nonsense_Mutation p.R1018* 0.23 TCGA-VQ-A8P2-01 1 150972938 150972938 G A FAM63A Missense_Mutation p.P292S 0.33 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 1 151001399 151001399 C T PRUNE Silent p.P304P 0.33 TCGA-VQ-A8P2-01 1 151006474 151006474 G A PRUNE Missense_Mutation p.A376T 0.30 tolerated(0.4) benign(0.021) TCGA-VQ-A8P2-01 1 151015554 151015554 C T BNIPL Missense_Mutation p.R186W 0.39 deleterious(0.02) benign(0.007) TCGA-VQ-A8P2-01 1 151158055 151158055 C T VPS72 Silent p.P104P 0.07 TCGA-VQ-A8P2-01 1 151258912 151258912 A C ZNF687 Missense_Mutation p.S49R 0.11 deleterious(0.01) benign(0.037) TCGA-VQ-A8P2-01 1 151260136 151260136 G T ZNF687 Missense_Mutation p.G457W 0.20 deleterious(0.02) possibly_damaging(0.664) TCGA-VQ-A8P2-01 1 151260428 151260428 G A ZNF687 Missense_Mutation p.R554H 0.40 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 1 151280270 151280270 C T PI4KB Missense_Mutation p.R333Q 0.10 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8P2-01 1 151314770 151314770 T C RFX5 Silent p.A581A 0.38 TCGA-VQ-A8P2-01 1 151315473 151315473 G T RFX5 Missense_Mutation p.S347Y 0.36 deleterious_low_confidence(0) possibly_damaging(0.665) TCGA-VQ-A8P2-01 1 151318741 151318741 G - RFX5 Frame_Shift_Del p.P19Qfs*28 0.47 TCGA-VQ-A8P2-01 1 151337041 151337041 C T SELENBP1 Missense_Mutation p.C466Y 0.35 deleterious(0) probably_damaging(0.987) TCGA-VQ-A8P2-01 1 151400763 151400763 G A POGZ Missense_Mutation p.P232L 0.29 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 1 151400887 151400887 G T POGZ Missense_Mutation p.P191T 0.12 deleterious(0.01) probably_damaging(0.993) TCGA-VQ-A8P2-01 1 151611550 151611550 G A SNX27 Silent p.S166S 0.29 TCGA-VQ-A8P2-01 1 151638415 151638415 G A SNX27 Missense_Mutation p.A305T 0.07 tolerated(0.21) benign(0.004) TCGA-VQ-A8P2-01 1 151678383 151678383 C A CELF3 Missense_Mutation p.E395D 0.45 tolerated(0.55) probably_damaging(0.997) TCGA-VQ-A8P2-01 1 151681739 151681739 G A CELF3 Silent p.I121I 0.15 TCGA-VQ-A8P2-01 1 151732444 151732444 G A MRPL9 3'UTR 0.44 TCGA-VQ-A8P2-01 1 151739644 151739644 C T OAZ3 Missense_Mutation p.T13I 0.33 tolerated(0.06) benign(0.081) TCGA-VQ-A8P2-01 1 151774632 151774632 G A LINGO4 Silent p.S183S 0.12 TCGA-VQ-A8P2-01 1 151825967 151825967 C T THEM5 Silent p.L25L 0.35 TCGA-VQ-A8P2-01 1 152081259 152081259 C T TCHH Silent p.L1478L 0.40 TCGA-VQ-A8P2-01 1 152082542 152082542 G A TCHH Missense_Mutation p.R1051W 0.41 unknown(0) TCGA-VQ-A8P2-01 1 152083805 152083805 G A TCHH Missense_Mutation p.R630C 0.36 unknown(0) TCGA-VQ-A8P2-01 1 152085375 152085375 C A TCHH Missense_Mutation p.K106N 0.16 unknown(0) TCGA-VQ-A8P2-01 1 152085506 152085506 G A TCHH Missense_Mutation p.L63F 0.50 unknown(0) TCGA-VQ-A8P2-01 1 152281922 152281922 G A FLG Missense_Mutation p.R1814C 0.13 possibly_damaging(0.689) TCGA-VQ-A8P2-01 1 152285061 152285061 C A FLG Missense_Mutation p.Q767H 0.39 probably_damaging(0.987) TCGA-VQ-A8P2-01 1 152286567 152286567 G T FLG Silent p.G265G 0.42 TCGA-VQ-A8P2-01 1 152325462 152325462 G A FLG2 Silent p.G1600G 0.36 TCGA-VQ-A8P2-01 1 152328120 152328120 T A FLG2 Silent p.G714G 0.42 TCGA-VQ-A8P2-01 1 152659447 152659447 C T LCE2B Missense_Mutation p.A43V 0.08 tolerated_low_confidence(0.67) unknown(0) TCGA-VQ-A8P2-01 1 152759976 152759976 C T LCE1E Silent p.C67C 0.29 TCGA-VQ-A8P2-01 1 152785035 152785035 C A LCE1B Missense_Mutation p.P38H 0.38 deleterious_low_confidence(0) unknown(0) TCGA-VQ-A8P2-01 1 152957781 152957781 C T SPRR1A Silent p.C25C 0.23 TCGA-VQ-A8P2-01 1 153066039 153066039 G A SPRR2E Silent p.C63C 0.31 TCGA-VQ-A8P2-01 1 153085021 153085021 G A SPRR2F Silent p.C63C 0.08 TCGA-VQ-A8P2-01 1 153177276 153177276 C T LELP1 Silent p.C31C 0.32 TCGA-VQ-A8P2-01 1 153318589 153318589 A G PGLYRP4 Missense_Mutation p.L43P 0.44 deleterious(0.02) probably_damaging(0.937) TCGA-VQ-A8P2-01 1 153659175 153659175 C - NPR1 Frame_Shift_Del p.N607Ifs*62 0.31 TCGA-VQ-A8P2-01 1 153736611 153736611 G A INTS3 Silent p.E613E 0.08 TCGA-VQ-A8P2-01 1 153902844 153902844 G A DENND4B Missense_Mutation p.R1474W 0.35 deleterious(0) possibly_damaging(0.732) TCGA-VQ-A8P2-01 1 153906120 153906120 G T DENND4B Missense_Mutation p.L1057M 0.40 deleterious(0.04) benign(0.422) TCGA-VQ-A8P2-01 1 153932806 153932806 C T SLC39A1 Missense_Mutation p.C248Y 0.28 tolerated(0.07) benign(0.059) TCGA-VQ-A8P2-01 1 153946095 153946095 G T CREB3L4 Splice_Site p.X300_splice 0.35 TCGA-VQ-A8P2-01 1 154164471 154164472 - T TPM3 Frame_Shift_Ins p.M9Dfs*19 0.30 TCGA-VQ-A8P2-01 1 154223770 154223771 - A UBAP2L Frame_Shift_Ins p.A492Sfs*6 0.33 TCGA-VQ-A8P2-01 1 154246391 154246391 C - HAX1 Frame_Shift_Del p.Q155Nfs*59 0.27 TCGA-VQ-A8P2-01 1 154313483 154313483 C A ATP8B2 Silent p.T429T 0.37 TCGA-VQ-A8P2-01 1 154461735 154461735 G A SHE Silent p.T272T 0.16 TCGA-VQ-A8P2-01 1 154517336 154517336 C T TDRD10 Missense_Mutation p.A288V 0.42 deleterious(0) possibly_damaging(0.85) TCGA-VQ-A8P2-01 1 154897701 154897701 G A PMVK Silent p.F161F 0.47 TCGA-VQ-A8P2-01 1 154919229 154919229 C A PBXIP1 Missense_Mutation p.E307D 0.08 tolerated(0.09) probably_damaging(0.972) TCGA-VQ-A8P2-01 1 154950494 154950494 C A CKS1B Missense_Mutation p.L31M 0.08 tolerated(0.22) benign(0.209) TCGA-VQ-A8P2-01 1 154962060 154962060 C T FLAD1 Missense_Mutation p.A381V 0.34 tolerated(0.08) benign(0.206) TCGA-VQ-A8P2-01 1 155041388 155041388 G - EFNA4 Intron 0.21 TCGA-VQ-A8P2-01 1 155156330 155156330 G A TRIM46 Silent p.S648S 0.09 TCGA-VQ-A8P2-01 1 155205035 155205035 C A GBA Missense_Mutation p.V486L 0.11 tolerated(0.16) benign(0.118) TCGA-VQ-A8P2-01 1 155247630 155247630 C A HCN3 Silent p.A83A 0.27 TCGA-VQ-A8P2-01 1 155255098 155255098 G A HCN3 Missense_Mutation p.R411H 0.53 deleterious(0.04) possibly_damaging(0.829) TCGA-VQ-A8P2-01 1 155258141 155258141 C T HCN3 Missense_Mutation p.R738W 0.47 deleterious_low_confidence(0.01) possibly_damaging(0.531) TCGA-VQ-A8P2-01 1 155258225 155258225 C T HCN3 Missense_Mutation p.R766W 0.31 deleterious_low_confidence(0) benign(0.428) TCGA-VQ-A8P2-01 1 155282083 155282083 G T FDPS Missense_Mutation p.R126L 0.38 deleterious(0.02) possibly_damaging(0.764) TCGA-VQ-A8P2-01 1 155282162 155282162 G A FDPS Nonsense_Mutation p.W152* 0.37 TCGA-VQ-A8P2-01 1 155290373 155290373 G A FDPS Silent p.A411A 0.38 TCGA-VQ-A8P2-01 1 155294223 155294223 C T RUSC1 Intron 0.41 TCGA-VQ-A8P2-01 1 155313477 155313477 G A ASH1L Missense_Mutation p.R2680C 0.22 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 1 15541857 15541857 C T TMEM51 Missense_Mutation p.R92W 0.29 deleterious(0) probably_damaging(0.983) TCGA-VQ-A8P2-01 1 155629672 155629672 G A YY1AP1 Missense_Mutation p.H815Y 0.36 tolerated_low_confidence(0.1) benign(0.012) TCGA-VQ-A8P2-01 1 155630182 155630182 G A YY1AP1 Missense_Mutation p.P645S 0.36 tolerated_low_confidence(0.13) benign(0.396) TCGA-VQ-A8P2-01 1 155630479 155630479 G A YY1AP1 Missense_Mutation p.R546C 0.32 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-VQ-A8P2-01 1 155646490 155646490 G A YY1AP1 Missense_Mutation p.A196V 0.40 tolerated(1) benign(0.001) TCGA-VQ-A8P2-01 1 155726824 155726824 C T GON4L Silent p.E1814E 0.30 TCGA-VQ-A8P2-01 1 155742981 155742981 G A GON4L Missense_Mutation p.P791S 0.34 deleterious(0.02) probably_damaging(0.994) TCGA-VQ-A8P2-01 1 155791283 155791283 C T GON4L Silent p.T315T 0.28 TCGA-VQ-A8P2-01 1 155851034 155851034 C T SYT11 Missense_Mutation p.A344V 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A8P2-01 1 156025075 156025075 A C LAMTOR2 Silent p.S30S 0.40 TCGA-VQ-A8P2-01 1 156047100 156047100 G A MEX3A Silent p.N276N 0.15 TCGA-VQ-A8P2-01 1 156247835 156247835 G A SMG5 Missense_Mutation p.R60C 0.09 deleterious(0) benign(0.35) TCGA-VQ-A8P2-01 1 156437332 156437332 G T MEF2D 3'UTR 0.31 TCGA-VQ-A8P2-01 1 156438576 156438576 G T MEF2D Missense_Mutation p.L415I 0.44 deleterious(0.04) benign(0.046) TCGA-VQ-A8P2-01 1 156536189 156536189 C T IQGAP3 Missense_Mutation p.R92Q 0.52 deleterious(0) benign(0.256) TCGA-VQ-A8P2-01 1 156565167 156565167 G A GPATCH4 Silent p.G322G 0.41 TCGA-VQ-A8P2-01 1 156566223 156566223 C A GPATCH4 Missense_Mutation p.E132D 0.24 tolerated(0.08) benign(0.14) TCGA-VQ-A8P2-01 1 156593864 156593864 C T HAPLN2 Silent p.G117G 0.42 TCGA-VQ-A8P2-01 1 156616837 156616837 G A BCAN Silent p.A112A 0.28 TCGA-VQ-A8P2-01 1 156641366 156641366 C T NES Missense_Mutation p.E872K 0.33 tolerated(0.47) benign(0.003) TCGA-VQ-A8P2-01 1 156708445 156708445 G - MRPL24 Frame_Shift_Del p.H18Ifs*6 0.34 TCGA-VQ-A8P2-01 1 156814043 156814043 G T INSRR Missense_Mutation p.L923I 0.37 tolerated(0.48) benign(0.019) TCGA-VQ-A8P2-01 1 1573911 1573911 G A CDK11B Silent p.I434I 0.18 TCGA-VQ-A8P2-01 1 15752395 15752395 G A EFHD2 Missense_Mutation p.D113N 0.71 deleterious(0.03) probably_damaging(0.983) TCGA-VQ-A8P2-01 1 157567766 157567766 C A FCRL4 5'UTR 0.33 TCGA-VQ-A8P2-01 1 157740266 157740266 G T FCRL2 Missense_Mutation p.F81L 0.35 tolerated(0.11) benign(0.011) TCGA-VQ-A8P2-01 1 157773730 157773730 G A FCRL1 Missense_Mutation p.A75V 0.43 tolerated(0.1) benign(0.035) TCGA-VQ-A8P2-01 1 158063222 158063222 G A KIRREL Missense_Mutation p.R522Q 0.40 deleterious(0.04) probably_damaging(0.964) TCGA-VQ-A8P2-01 1 15813902 15813902 G A CELA2B Silent p.R254R 0.15 TCGA-VQ-A8P2-01 1 158226842 158226842 G A CD1A Missense_Mutation p.V291I 0.47 tolerated(1) benign(0.009) TCGA-VQ-A8P2-01 1 158299903 158299903 C A CD1B Missense_Mutation p.G116C 0.14 tolerated(0.09) possibly_damaging(0.722) TCGA-VQ-A8P2-01 1 158390013 158390013 A G OR10K2 Missense_Mutation p.L215S 0.18 deleterious(0) possibly_damaging(0.809) TCGA-VQ-A8P2-01 1 158813829 158813829 G T MNDA Nonsense_Mutation p.G163* 0.32 TCGA-VQ-A8P2-01 1 158817524 158817524 G A MNDA Missense_Mutation p.V332I 0.43 deleterious(0.04) benign(0.007) TCGA-VQ-A8P2-01 1 15893734 15893734 A G DNAJC16 Missense_Mutation p.K640R 0.43 tolerated(0.07) possibly_damaging(0.452) TCGA-VQ-A8P2-01 1 158988417 158988417 A G IFI16 Silent p.V316V 0.40 TCGA-VQ-A8P2-01 1 159175709 159175709 C A DARC Silent p.G162G 0.24 TCGA-VQ-A8P2-01 1 159283570 159283570 C A OR10J3 Nonsense_Mutation p.E294* 0.36 TCGA-VQ-A8P2-01 1 159505449 159505449 C A OR10J5 Missense_Mutation p.A117S 0.47 tolerated(0.07) possibly_damaging(0.648) TCGA-VQ-A8P2-01 1 159799844 159799844 C A SLAMF8 Missense_Mutation p.L77M 0.25 deleterious(0.04) possibly_damaging(0.898) TCGA-VQ-A8P2-01 1 159850438 159850438 C T CCDC19 Missense_Mutation p.R317H 0.41 tolerated(0.11) benign(0.066) TCGA-VQ-A8P2-01 1 159860336 159860336 G A CCDC19 Missense_Mutation p.A69V 0.42 tolerated(0.09) benign(0.075) TCGA-VQ-A8P2-01 1 159869897 159869897 C T CCDC19 5'UTR 0.17 TCGA-VQ-A8P2-01 1 159888667 159888667 C T TAGLN2 Missense_Mutation p.G175R 0.46 deleterious(0) possibly_damaging(0.509) TCGA-VQ-A8P2-01 1 159889501 159889501 C T TAGLN2 Missense_Mutation p.R102H 0.08 tolerated(0.14) benign(0.019) TCGA-VQ-A8P2-01 1 159906555 159906555 C T IGSF9 Missense_Mutation p.G182S 0.38 tolerated(0.37) benign(0.031) TCGA-VQ-A8P2-01 1 159912824 159912824 C T IGSF9 Missense_Mutation p.R59H 0.33 deleterious(0.03) benign(0.127) TCGA-VQ-A8P2-01 1 160001515 160001515 C T PIGM Silent p.K5K 0.51 TCGA-VQ-A8P2-01 1 160012247 160012247 G A KCNJ10 Nonsense_Mutation p.R26* 0.09 TCGA-VQ-A8P2-01 1 160012307 160012307 T C KCNJ10 Missense_Mutation p.K6E 0.13 deleterious_low_confidence(0.01) benign(0.371) TCGA-VQ-A8P2-01 1 160062276 160062276 G A IGSF8 Silent p.L508L 0.28 TCGA-VQ-A8P2-01 1 160100068 160100068 G A ATP1A2 Silent p.G546G 0.39 TCGA-VQ-A8P2-01 1 160147395 160147395 C T ATP1A4 Missense_Mutation p.R893C 0.34 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 1 160192564 160192564 G A DCAF8 Silent p.G439G 0.35 TCGA-VQ-A8P2-01 1 160259787 160259787 C A COPA 3'UTR 0.74 TCGA-VQ-A8P2-01 1 160321033 160321033 A C NCSTN Missense_Mutation p.S202R 0.45 tolerated(0.06) benign(0.037) TCGA-VQ-A8P2-01 1 160325672 160325672 C T NCSTN Missense_Mutation p.T492M 0.43 deleterious(0) possibly_damaging(0.883) TCGA-VQ-A8P2-01 1 160340755 160340755 G A NHLH1 Silent p.T78T 0.36 TCGA-VQ-A8P2-01 1 160604508 160604508 C T SLAMF1 Missense_Mutation p.G199S 0.11 tolerated(0.23) possibly_damaging(0.632) TCGA-VQ-A8P2-01 1 160616666 160616666 C T SLAMF1 Missense_Mutation p.G24R 0.32 tolerated(0.15) benign(0.284) TCGA-VQ-A8P2-01 1 16069670 16069670 C T TMEM82 Missense_Mutation p.T106M 0.61 tolerated(0.33) benign(0.056) TCGA-VQ-A8P2-01 1 160722977 160722977 C T SLAMF7 3'UTR 0.29 TCGA-VQ-A8P2-01 1 161021266 161021266 G T ARHGAP30 Missense_Mutation p.L420I 0.45 tolerated(0.05) possibly_damaging(0.529) TCGA-VQ-A8P2-01 1 161021308 161021308 G A ARHGAP30 Missense_Mutation p.R406C 0.45 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 1 161039378 161039378 C T ARHGAP30 Missense_Mutation p.A13T 0.40 tolerated(0.22) benign(0.018) TCGA-VQ-A8P2-01 1 161042555 161042555 C T PVRL4 Missense_Mutation p.G477S 0.39 tolerated(0.64) benign(0.325) TCGA-VQ-A8P2-01 1 161047246 161047246 A T PVRL4 Missense_Mutation p.S243T 0.41 tolerated(0.25) benign(0.005) TCGA-VQ-A8P2-01 1 161137796 161137796 G A PPOX Missense_Mutation p.R117H 0.43 deleterious(0.05) possibly_damaging(0.803) TCGA-VQ-A8P2-01 1 161140244 161140244 G A PPOX Missense_Mutation p.G345R 0.33 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 1 161163532 161163532 G A ADAMTS4 Nonsense_Mutation p.R545* 0.42 TCGA-VQ-A8P2-01 1 161163934 161163934 G A ADAMTS4 Missense_Mutation p.R447C 0.10 deleterious(0) probably_damaging(0.944) TCGA-VQ-A8P2-01 1 161180173 161180173 G A NDUFS2 Missense_Mutation p.G287D 0.35 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8P2-01 1 161183716 161183716 G A NDUFS2 Intron 0.45 TCGA-VQ-A8P2-01 1 161495689 161495689 C T HSPA6 Missense_Mutation p.T414M 0.54 tolerated_low_confidence(0.09) benign(0.357) TCGA-VQ-A8P2-01 1 161518363 161518363 T G FCGR3A Missense_Mutation p.N92T 0.15 tolerated(0.08) benign(0.06) TCGA-VQ-A8P2-01 1 161599720 161599720 T G FCGR3B Missense_Mutation p.N92T 0.43 tolerated(0.14) benign(0.041) TCGA-VQ-A8P2-01 1 161600944 161600944 C T FCGR3B Missense_Mutation p.G17S 0.22 tolerated(0.81) benign(0.001) TCGA-VQ-A8P2-01 1 161693398 161693398 C A FCRLB Silent p.L98L 0.32 TCGA-VQ-A8P2-01 1 161695849 161695849 C A FCRLB Missense_Mutation p.F182L 0.17 tolerated(0.05) possibly_damaging(0.84) TCGA-VQ-A8P2-01 1 161721744 161721744 C T DUSP12 Missense_Mutation p.R183C 0.26 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 1 161726621 161726621 T C DUSP12 Missense_Mutation p.Y303H 0.56 tolerated(0.27) benign(0.041) TCGA-VQ-A8P2-01 1 161748107 161748107 G A ATF6 Silent p.T52T 0.36 TCGA-VQ-A8P2-01 1 161970059 161970059 G A OLFML2B Nonsense_Mutation p.R265* 0.40 TCGA-VQ-A8P2-01 1 162344055 162344055 C T C1orf111 Missense_Mutation p.R190H 0.40 deleterious(0.03) probably_damaging(1) TCGA-VQ-A8P2-01 1 162467889 162467889 C A UHMK1 Silent p.S33S 0.26 TCGA-VQ-A8P2-01 1 16254783 16254783 A G SPEN Missense_Mutation p.Y683C 0.40 probably_damaging(0.998) TCGA-VQ-A8P2-01 1 16255911 16255911 C T SPEN Missense_Mutation p.T1059I 0.09 benign(0.02) TCGA-VQ-A8P2-01 1 16257668 16257668 G A SPEN Missense_Mutation p.V1645I 0.35 benign(0.001) TCGA-VQ-A8P2-01 1 16258485 16258485 G A SPEN Missense_Mutation p.R1917H 0.47 probably_damaging(0.996) TCGA-VQ-A8P2-01 1 16262614 16262614 G A SPEN Silent p.V3293V 0.17 TCGA-VQ-A8P2-01 1 162743361 162743361 C T DDR2 Nonsense_Mutation p.R611* 0.49 TCGA-VQ-A8P2-01 1 162824753 162824753 G A C1orf110 Silent p.F237F 0.38 TCGA-VQ-A8P2-01 1 162825104 162825104 G T C1orf110 Silent p.S120S 0.13 TCGA-VQ-A8P2-01 1 163043367 163043368 - A RGS4 Frame_Shift_Ins p.I211Dfs*3 0.29 TCGA-VQ-A8P2-01 1 163131754 163131754 G A RGS5 Silent p.D56D 0.23 TCGA-VQ-A8P2-01 1 163317623 163317623 C T NUF2 Missense_Mutation p.S340L 0.38 deleterious(0.01) possibly_damaging(0.656) TCGA-VQ-A8P2-01 1 16376318 16376318 G A CLCNKB Missense_Mutation p.C292Y 0.38 deleterious(0) probably_damaging(0.992) TCGA-VQ-A8P2-01 1 16462186 16462186 G T EPHA2 Missense_Mutation p.S464R 0.51 deleterious(0.01) benign(0.259) TCGA-VQ-A8P2-01 1 165173061 165173061 T A LMX1A 3'UTR 0.32 TCGA-VQ-A8P2-01 1 165173062 165173062 C T LMX1A 3'UTR 0.38 TCGA-VQ-A8P2-01 1 16531666 16531666 C T ARHGEF19 Silent p.V554V 0.44 TCGA-VQ-A8P2-01 1 16534232 16534232 G A ARHGEF19 Silent p.S245S 0.37 TCGA-VQ-A8P2-01 1 165378875 165378875 C A RXRG Missense_Mutation p.Q322H 0.28 deleterious(0.01) possibly_damaging(0.852) TCGA-VQ-A8P2-01 1 165513759 165513759 C A LRRC52 Missense_Mutation p.L76I 0.43 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8P2-01 1 165638668 165638668 C A ALDH9A1 Missense_Mutation p.R317I 0.35 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 1 166831572 166831572 C T TADA1 Silent p.L136L 0.45 TCGA-VQ-A8P2-01 1 167024238 167024238 T C GPA33 Missense_Mutation p.T268A 0.35 tolerated(0.88) benign(0.001) TCGA-VQ-A8P2-01 1 167096069 167096069 C T DUSP27 Silent p.S567S 0.39 TCGA-VQ-A8P2-01 1 16721628 16721628 G A SZRD1 Missense_Mutation p.R151H 0.28 tolerated(0.35) benign(0.003) TCGA-VQ-A8P2-01 1 167385076 167385076 T - POU2F1 3'UTR 0.28 TCGA-VQ-A8P2-01 1 16748034 16748034 G A SPATA21 Silent p.T38T 0.44 TCGA-VQ-A8P2-01 1 167666339 167666339 C T RCSD1 Missense_Mutation p.R160W 0.42 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 1 168054954 168054954 C A GPR161 Missense_Mutation p.A489S 0.41 deleterious_low_confidence(0.01) benign(0.414) TCGA-VQ-A8P2-01 1 16893783 16893783 A G NBPF1 Silent p.C910C 0.05 TCGA-VQ-A8P2-01 1 16916398 16916398 G T NBPF1 Missense_Mutation p.L92I 0.32 deleterious(0.01) benign(0.001) TCGA-VQ-A8P2-01 1 169390795 169390795 C T CCDC181 Missense_Mutation p.A292T 0.13 deleterious(0) benign(0.008) TCGA-VQ-A8P2-01 1 169513570 169513570 G A F5 Missense_Mutation p.R647C 0.24 tolerated(0.06) benign(0.055) TCGA-VQ-A8P2-01 1 169586492 169586492 G A SELP Silent p.Y85Y 0.11 TCGA-VQ-A8P2-01 1 169586511 169586511 A C SELP Missense_Mutation p.L79R 0.42 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 1 169772367 169772367 C T C1orf112 Nonsense_Mutation p.Q77* 0.29 TCGA-VQ-A8P2-01 1 169816851 169816851 G A C1orf112 Silent p.S655S 0.35 TCGA-VQ-A8P2-01 1 169822808 169822809 - A C1orf112 3'UTR 0.39 TCGA-VQ-A8P2-01 1 170024465 170024465 G A KIFAP3 Nonsense_Mutation p.R49* 0.42 TCGA-VQ-A8P2-01 1 17030522 17030522 G A ESPNP RNA 0.14 TCGA-VQ-A8P2-01 1 171168557 171168557 G A FMO2 Missense_Mutation p.R186H 0.19 deleterious(0.03) benign(0.059) TCGA-VQ-A8P2-01 1 171504578 171504578 G A PRRC2C Missense_Mutation p.V627I 0.44 unknown(0) TCGA-VQ-A8P2-01 1 171519226 171519226 T C PRRC2C Silent p.S1656S 0.36 TCGA-VQ-A8P2-01 1 171537433 171537433 C T PRRC2C Silent p.T2200T 0.40 TCGA-VQ-A8P2-01 1 172628410 172628410 G A FASLG Nonsense_Mutation p.W23* 0.37 TCGA-VQ-A8P2-01 1 17266496 17266496 C T CROCC Silent p.R572R 0.25 TCGA-VQ-A8P2-01 1 17274858 17274858 G T CROCC Missense_Mutation p.E849D 0.33 benign(0.061) TCGA-VQ-A8P2-01 1 17316727 17316727 G A ATP13A2 Silent p.P769P 0.08 TCGA-VQ-A8P2-01 1 17322902 17322902 C T ATP13A2 Missense_Mutation p.V429M 0.45 deleterious(0.02) benign(0.257) TCGA-VQ-A8P2-01 1 173596204 173596204 C A ANKRD45 Missense_Mutation p.K197N 0.38 deleterious(0) possibly_damaging(0.87) TCGA-VQ-A8P2-01 1 173780434 173780434 C T CENPL Missense_Mutation p.D2N 0.44 deleterious_low_confidence(0.01) probably_damaging(0.983) TCGA-VQ-A8P2-01 1 173826789 173826789 C A DARS2 Silent p.P628P 0.38 TCGA-VQ-A8P2-01 1 173826826 173826826 G T DARS2 Missense_Mutation p.A641S 0.32 tolerated_low_confidence(0.27) benign(0.003) TCGA-VQ-A8P2-01 1 173883801 173883801 C A SERPINC1 Missense_Mutation p.D100Y 0.39 deleterious(0) possibly_damaging(0.688) TCGA-VQ-A8P2-01 1 174926670 174926671 - A RABGAP1L Frame_Shift_Ins p.M807Nfs*3 0.15 TCGA-VQ-A8P2-01 1 175049335 175049335 C T TNN Missense_Mutation p.T274M 0.50 deleterious(0.01) probably_damaging(0.998) TCGA-VQ-A8P2-01 1 175375727 175375727 T C TNR Missense_Mutation p.R42G 0.32 tolerated_low_confidence(0.05) benign(0) TCGA-VQ-A8P2-01 1 176526120 176526120 C A PAPPA2 Missense_Mutation p.P221H 0.13 tolerated(0.14) benign(0.005) TCGA-VQ-A8P2-01 1 176526308 176526308 C T PAPPA2 Missense_Mutation p.R284W 0.21 deleterious(0.02) benign(0.22) TCGA-VQ-A8P2-01 1 176564043 176564043 C T PAPPA2 Nonsense_Mutation p.Q435* 0.43 TCGA-VQ-A8P2-01 1 176640162 176640162 T C PAPPA2 Missense_Mutation p.F683S 0.30 tolerated(0.09) probably_damaging(0.998) TCGA-VQ-A8P2-01 1 176833392 176833392 C A ASTN1 3'UTR 0.39 TCGA-VQ-A8P2-01 1 176845742 176845742 G A ASTN1 Missense_Mutation p.R1132W 0.47 deleterious(0) probably_damaging(0.993) TCGA-VQ-A8P2-01 1 177030252 177030252 C T ASTN1 Missense_Mutation p.A145T 0.10 tolerated_low_confidence(0.13) benign(0.016) TCGA-VQ-A8P2-01 1 17721478 17721478 C T PADI6 RNA 0.36 TCGA-VQ-A8P2-01 1 178412033 178412033 A - RASAL2 Frame_Shift_Del p.K386Rfs*10 0.29 TCGA-VQ-A8P2-01 1 179077482 179077482 G A ABL2 Nonsense_Mutation p.R974* 0.40 TCGA-VQ-A8P2-01 1 179314089 179314089 G A SOAT1 Missense_Mutation p.G332D 0.38 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8P2-01 1 179314169 179314169 G A SOAT1 Missense_Mutation p.A359T 0.36 tolerated(0.64) possibly_damaging(0.512) TCGA-VQ-A8P2-01 1 17934400 17934400 G T ARHGEF10L Missense_Mutation p.E179D 0.62 deleterious(0.02) benign(0.008) TCGA-VQ-A8P2-01 1 179414158 179414158 C T AXDND1 Silent p.Y539Y 0.41 TCGA-VQ-A8P2-01 1 179599928 179599928 A - TDRD5 Frame_Shift_Del p.K335Nfs*2 0.29 TCGA-VQ-A8P2-01 1 179659878 179659878 C T TDRD5 Missense_Mutation p.R970C 0.33 deleterious(0.01) possibly_damaging(0.764) TCGA-VQ-A8P2-01 1 179887357 179887357 A G TOR1AIP1 Missense_Mutation p.R579G 0.41 tolerated(0.36) benign(0.007) TCGA-VQ-A8P2-01 1 180163519 180163519 G A QSOX1 Missense_Mutation p.R487H 0.22 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 1 180240567 180240567 G A LHX4 Silent p.Q168Q 0.39 TCGA-VQ-A8P2-01 1 180366723 180366723 G A ACBD6 Silent p.H197H 0.08 TCGA-VQ-A8P2-01 1 181058993 181058993 C A IER5 Missense_Mutation p.P319T 0.30 deleterious(0) benign(0.106) TCGA-VQ-A8P2-01 1 18152574 18152574 G A ACTL8 Missense_Mutation p.A221T 0.49 deleterious(0.02) benign(0.434) TCGA-VQ-A8P2-01 1 182026339 182026339 C T ZNF648 Silent p.A269A 0.62 TCGA-VQ-A8P2-01 1 182026819 182026819 C T ZNF648 Silent p.K109K 0.35 TCGA-VQ-A8P2-01 1 182353824 182353824 G A GLUL Missense_Mutation p.R280W 0.44 deleterious(0.03) benign(0.243) TCGA-VQ-A8P2-01 1 183207510 183207510 C T LAMC2 Silent p.G941G 0.06 TCGA-VQ-A8P2-01 1 183486865 183486865 C T SMG7 Silent p.G74G 0.43 TCGA-VQ-A8P2-01 1 183511262 183511262 C T SMG7 Silent p.I489I 0.18 TCGA-VQ-A8P2-01 1 183617811 183617811 G A APOBEC4 Nonsense_Mutation p.R36* 0.33 TCGA-VQ-A8P2-01 1 184690500 184690500 T C EDEM3 Missense_Mutation p.I292V 0.40 deleterious(0.01) possibly_damaging(0.836) TCGA-VQ-A8P2-01 1 184868327 184868327 C A FAM129A Missense_Mutation p.Q57H 0.42 deleterious(0.03) benign(0.222) TCGA-VQ-A8P2-01 1 1849483 1849483 G T TMEM52 Silent p.S156S 0.21 TCGA-VQ-A8P2-01 1 185171907 185171907 A G SWT1 Missense_Mutation p.I549V 0.34 tolerated(0.8) benign(0.008) TCGA-VQ-A8P2-01 1 185276713 185276713 A G IVNS1ABP Missense_Mutation p.S147P 0.17 tolerated(0.31) benign(0.218) TCGA-VQ-A8P2-01 1 185703876 185703876 G A HMCN1 5'UTR 0.46 TCGA-VQ-A8P2-01 1 185947000 185947000 G A HMCN1 Missense_Mutation p.G818D 0.38 probably_damaging(0.999) TCGA-VQ-A8P2-01 1 186014935 186014935 C T HMCN1 Silent p.D2140D 0.30 TCGA-VQ-A8P2-01 1 186022978 186022978 C T HMCN1 Missense_Mutation p.S2241F 0.37 benign(0.006) TCGA-VQ-A8P2-01 1 186036972 186036972 C A HMCN1 Missense_Mutation p.P2571H 0.23 probably_damaging(0.998) TCGA-VQ-A8P2-01 1 186083197 186083197 C T HMCN1 Missense_Mutation p.P3740S 0.36 probably_damaging(0.998) TCGA-VQ-A8P2-01 1 186083984 186083984 T C HMCN1 Silent p.I3770I 0.45 TCGA-VQ-A8P2-01 1 186097424 186097424 G A HMCN1 Splice_Site p.X4302_splice 0.32 TCGA-VQ-A8P2-01 1 186275629 186275629 C T PRG4 Missense_Mutation p.P260S 0.38 possibly_damaging(0.71) TCGA-VQ-A8P2-01 1 186276690 186276690 C T PRG4 Silent p.P613P 0.41 TCGA-VQ-A8P2-01 1 186302468 186302468 G A TPR Silent p.S1747S 0.36 TCGA-VQ-A8P2-01 1 186324894 186324894 C T TPR Missense_Mutation p.S632N 0.26 benign(0.213) TCGA-VQ-A8P2-01 1 186328999 186328999 G A TPR Missense_Mutation p.R441C 0.39 possibly_damaging(0.689) TCGA-VQ-A8P2-01 1 186388153 186388153 C T C1orf27 Missense_Mutation p.A437V 0.37 deleterious(0) probably_damaging(0.979) TCGA-VQ-A8P2-01 1 19062252 19062252 G A PAX7 Missense_Mutation p.D428N 0.49 deleterious_low_confidence(0) possibly_damaging(0.533) TCGA-VQ-A8P2-01 1 19062358 19062358 G T PAX7 Missense_Mutation p.G463V 0.38 deleterious_low_confidence(0) benign(0.341) TCGA-VQ-A8P2-01 1 19166820 19166820 G A TAS1R2 Missense_Mutation p.S598L 0.46 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 1 19181066 19181066 C T TAS1R2 Missense_Mutation p.A300T 0.31 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 1 19181390 19181390 C T TAS1R2 Missense_Mutation p.E192K 0.40 tolerated(0.37) benign(0.2) TCGA-VQ-A8P2-01 1 19186106 19186106 C T TAS1R2 Missense_Mutation p.V17I 0.33 tolerated_low_confidence(0.27) benign(0.017) TCGA-VQ-A8P2-01 1 192127853 192127854 - A RGS18 Frame_Shift_Ins p.E31Rfs*12 0.17 TCGA-VQ-A8P2-01 1 192335171 192335171 C T RGS21 Nonsense_Mutation p.R126* 0.38 TCGA-VQ-A8P2-01 1 192545477 192545477 C T RGS1 Missense_Mutation p.S67F 0.40 tolerated(0.19) benign(0.1) TCGA-VQ-A8P2-01 1 19611181 19611181 G A AKR7A3 Missense_Mutation p.R235C 0.38 deleterious(0.01) benign(0.152) TCGA-VQ-A8P2-01 1 19612769 19612769 A G AKR7A3 Silent p.C104C 0.11 TCGA-VQ-A8P2-01 1 196309598 196309598 A G KCNT2 Silent p.Y552Y 0.15 TCGA-VQ-A8P2-01 1 19633574 19633574 T C AKR7A2 Missense_Mutation p.Y237C 0.39 deleterious(0) probably_damaging(0.992) TCGA-VQ-A8P2-01 1 196952198 196952198 C T CFHR5 Missense_Mutation p.P81L 0.29 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 1 197112577 197112577 C T ASPM Missense_Mutation p.V269I 0.35 tolerated(0.22) benign(0.021) TCGA-VQ-A8P2-01 1 197169642 197169642 G A ZBTB41 5'UTR 0.26 TCGA-VQ-A8P2-01 1 197404201 197404201 A C CRB1 Missense_Mutation p.S1070R 0.37 deleterious(0) possibly_damaging(0.879) TCGA-VQ-A8P2-01 1 197898211 197898211 G A LHX9 Missense_Mutation p.G339D 0.41 tolerated(0.55) benign(0.001) TCGA-VQ-A8P2-01 1 198666024 198666024 C T PTPRC Missense_Mutation p.A95V 0.35 tolerated_low_confidence(0.26) benign(0.006) TCGA-VQ-A8P2-01 1 19981561 19981561 C T MINOS1-NBL1 Missense_Mutation p.A13V 0.25 tolerated(0.22) benign(0.005) TCGA-VQ-A8P2-01 1 19992828 19992828 C T HTR6 Silent p.G194G 0.09 TCGA-VQ-A8P2-01 1 200376620 200376620 C T ZNF281 Silent p.G738G 0.28 TCGA-VQ-A8P2-01 1 200378004 200378004 C T ZNF281 Missense_Mutation p.R277Q 0.18 tolerated(0.44) possibly_damaging(0.75) TCGA-VQ-A8P2-01 1 200378264 200378264 C A ZNF281 Missense_Mutation p.Q190H 0.49 tolerated(0.16) benign(0) TCGA-VQ-A8P2-01 1 200573065 200573065 C T KIF14 Missense_Mutation p.E589K 0.31 deleterious(0.03) probably_damaging(0.984) TCGA-VQ-A8P2-01 1 20082230 20082230 C T TMCO4 Missense_Mutation p.V138I 0.35 tolerated(1) benign(0.002) TCGA-VQ-A8P2-01 1 200842741 200842741 C T GPR25 Silent p.G192G 0.38 TCGA-VQ-A8P2-01 1 200882859 200882859 C T C1orf106 3'Flank 0.36 TCGA-VQ-A8P2-01 1 200960074 200960074 C T KIF21B Silent p.A886A 0.36 TCGA-VQ-A8P2-01 1 200969637 200969637 G A KIF21B Silent p.A522A 0.36 TCGA-VQ-A8P2-01 1 200977957 200977957 G A KIF21B Silent p.R129R 0.38 TCGA-VQ-A8P2-01 1 201054152 201054152 C T CACNA1S Silent p.L386L 0.41 TCGA-VQ-A8P2-01 1 201058503 201058503 G A CACNA1S Silent p.C261C 0.38 TCGA-VQ-A8P2-01 1 201282303 201282303 G T PKP1 Nonsense_Mutation p.G106* 0.19 TCGA-VQ-A8P2-01 1 201294188 201294188 C T PKP1 Missense_Mutation p.P673S 0.34 tolerated(0.08) probably_damaging(0.999) TCGA-VQ-A8P2-01 1 201337322 201337322 G A TNNT2 Missense_Mutation p.A34V 0.24 tolerated(0.3) unknown(0) TCGA-VQ-A8P2-01 1 20141621 20141622 TG - RNF186 5'UTR 0.38 TCGA-VQ-A8P2-01 1 201437521 201437521 G A PHLDA3 3'UTR 0.32 TCGA-VQ-A8P2-01 1 201618209 201618209 C T NAV1 Missense_Mutation p.T138M 0.56 tolerated(0.08) benign(0.176) TCGA-VQ-A8P2-01 1 201750411 201750411 C T NAV1 Missense_Mutation p.T546I 0.23 deleterious(0) possibly_damaging(0.786) TCGA-VQ-A8P2-01 1 201869003 201869003 C T LMOD1 Missense_Mutation p.A380T 0.30 probably_damaging(0.996) TCGA-VQ-A8P2-01 1 201869333 201869333 T C LMOD1 Missense_Mutation p.K270E 0.13 benign(0.014) TCGA-VQ-A8P2-01 1 20224082 20224082 G A OTUD3 Missense_Mutation p.R178Q 0.16 deleterious(0.01) probably_damaging(0.965) TCGA-VQ-A8P2-01 1 202287079 202287079 G T LGR6 Splice_Site p.X550_splice 0.36 TCGA-VQ-A8P2-01 1 202700117 202700117 G A KDM5B Missense_Mutation p.L1366F 0.51 deleterious(0.01) possibly_damaging(0.847) TCGA-VQ-A8P2-01 1 202702840 202702840 G T KDM5B Missense_Mutation p.H1200N 0.48 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8P2-01 1 202710688 202710688 G A KDM5B Missense_Mutation p.R918C 0.41 deleterious(0.01) probably_damaging(0.969) TCGA-VQ-A8P2-01 1 202911318 202911318 G A ADIPOR1 Silent p.G278G 0.44 TCGA-VQ-A8P2-01 1 202985097 202985097 G A TMEM183A Silent p.T179T 0.48 TCGA-VQ-A8P2-01 1 202992130 202992130 T C TMEM183A Missense_Mutation p.W365R 0.28 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 1 20302242 20302242 G A PLA2G2A Silent p.Y129Y 0.10 TCGA-VQ-A8P2-01 1 203025588 203025588 G A PPFIA4 Missense_Mutation p.R225Q 0.34 deleterious(0.03) benign(0.013) TCGA-VQ-A8P2-01 1 203672839 203672839 G A ATP2B4 Missense_Mutation p.D333N 0.38 tolerated(0.13) possibly_damaging(0.521) TCGA-VQ-A8P2-01 1 203821346 203821346 G A ZC3H11A Missense_Mutation p.S751N 0.27 deleterious(0.01) benign(0.038) TCGA-VQ-A8P2-01 1 204124195 204124195 G A REN Silent p.Y390Y 0.25 TCGA-VQ-A8P2-01 1 204125411 204125411 G A REN Silent p.D285D 0.09 TCGA-VQ-A8P2-01 1 204125848 204125848 T C REN Missense_Mutation p.I259V 0.11 tolerated(1) benign(0.005) TCGA-VQ-A8P2-01 1 20412715 20412715 C T PLA2G5 Silent p.T60T 0.35 TCGA-VQ-A8P2-01 1 204197242 204197242 G A PLEKHA6 Silent p.T1000T 0.43 TCGA-VQ-A8P2-01 1 204228664 204228664 C T PLEKHA6 Silent p.P243P 0.44 TCGA-VQ-A8P2-01 1 204955198 204955198 A G NFASC Intron 0.43 TCGA-VQ-A8P2-01 1 204960423 204960423 C T NFASC Missense_Mutation p.T924I 0.24 deleterious(0.03) unknown(0) TCGA-VQ-A8P2-01 1 205072996 205072996 C T RBBP5 Missense_Mutation p.A171T 0.36 tolerated(0.05) benign(0.08) TCGA-VQ-A8P2-01 1 205498536 205498536 C T CDK18 Missense_Mutation p.P416L 0.29 tolerated(0.06) benign(0.295) TCGA-VQ-A8P2-01 1 205631988 205631988 T C SLC45A3 Missense_Mutation p.T311A 0.44 deleterious(0.01) benign(0.051) TCGA-VQ-A8P2-01 1 205688791 205688791 G A NUCKS1 Silent p.S132S 0.42 TCGA-VQ-A8P2-01 1 205744141 205744141 G A RAB7L1 5'UTR 0.15 TCGA-VQ-A8P2-01 1 205801774 205801774 G A PM20D1 Missense_Mutation p.R413C 0.56 deleterious(0.01) probably_damaging(0.93) TCGA-VQ-A8P2-01 1 205812885 205812885 T C PM20D1 Missense_Mutation p.N246S 0.50 tolerated(0.11) benign(0.102) TCGA-VQ-A8P2-01 1 205893531 205893531 G A SLC26A9 Silent p.V492V 0.12 TCGA-VQ-A8P2-01 1 206231121 206231121 C T AVPR1B Silent p.T418T 0.14 TCGA-VQ-A8P2-01 1 206243556 206243556 G A C1orf186 5'UTR 0.46 TCGA-VQ-A8P2-01 1 206320269 206320269 C T CTSE Nonsense_Mutation p.Q138* 0.32 TCGA-VQ-A8P2-01 1 206331023 206331023 C A CTSE Missense_Mutation p.D343E 0.16 tolerated(1) benign(0.001) TCGA-VQ-A8P2-01 1 206331144 206331144 C T CTSE Missense_Mutation p.R384C 0.38 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 1 206667295 206667297 CCT - IKBKE In_Frame_Del p.L698del 0.45 TCGA-VQ-A8P2-01 1 206772933 206772933 C T EIF2D Silent p.P362P 0.38 TCGA-VQ-A8P2-01 1 207085272 207085272 C T FAIM3 Silent p.K171K 0.13 TCGA-VQ-A8P2-01 1 207106490 207106490 G A PIGR Missense_Mutation p.A576V 0.33 tolerated(0.53) benign(0.023) TCGA-VQ-A8P2-01 1 207307750 207307750 G A C4BPA Silent p.A362A 0.15 TCGA-VQ-A8P2-01 1 207646199 207646199 G A CR2 Silent p.T551T 0.26 TCGA-VQ-A8P2-01 1 207648555 207648555 A - CR2 Frame_Shift_Del p.A906Pfs*3 0.34 TCGA-VQ-A8P2-01 1 208217877 208217877 G A PLXNA2 Missense_Mutation p.R1284C 0.38 deleterious(0) probably_damaging(0.982) TCGA-VQ-A8P2-01 1 20827564 20827564 G A MUL1 Silent p.F226F 0.14 TCGA-VQ-A8P2-01 1 20979189 20979189 G A DDOST Silent p.P382P 0.37 TCGA-VQ-A8P2-01 1 209797003 209797003 G T LAMB3 Missense_Mutation p.S735R 0.39 deleterious(0.02) possibly_damaging(0.724) TCGA-VQ-A8P2-01 1 209799008 209799008 G A LAMB3 Missense_Mutation p.A654V 0.35 tolerated(0.22) benign(0.005) TCGA-VQ-A8P2-01 1 209933542 209933543 AG - TRAF3IP3 Frame_Shift_Del p.E55Afs*67 0.36 TCGA-VQ-A8P2-01 1 209956237 209956237 G A C1orf74 Missense_Mutation p.T248I 0.45 tolerated(0.16) benign(0.316) TCGA-VQ-A8P2-01 1 209956441 209956441 G A C1orf74 Missense_Mutation p.P180L 0.09 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 1 210006631 210006631 T C DIEXF Missense_Mutation p.S164P 0.49 deleterious(0.01) possibly_damaging(0.824) TCGA-VQ-A8P2-01 1 21014028 21014028 C T KIF17 Silent p.P597P 0.22 TCGA-VQ-A8P2-01 1 210334289 210334289 C T SYT14 Missense_Mutation p.L588F 0.35 deleterious(0.02) possibly_damaging(0.561) TCGA-VQ-A8P2-01 1 2103765 2103765 C T PRKCZ Missense_Mutation p.T408M 0.33 deleterious(0.03) probably_damaging(0.997) TCGA-VQ-A8P2-01 1 21051039 21051039 G A SH2D5 Silent p.C160C 0.33 TCGA-VQ-A8P2-01 1 210522329 210522329 C T HHAT Intron 0.33 TCGA-VQ-A8P2-01 1 21076290 21076290 G A HP1BP3 Missense_Mutation p.P356L 0.44 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 1 211307362 211307362 C T KCNH1 5'Flank 0.21 TCGA-VQ-A8P2-01 1 211449609 211449609 T A RCOR3 Missense_Mutation p.M122K 0.50 deleterious(0) probably_damaging(0.976) TCGA-VQ-A8P2-01 1 211527802 211527802 C A TRAF5 Missense_Mutation p.S90Y 0.42 deleterious(0.03) possibly_damaging(0.45) TCGA-VQ-A8P2-01 1 211836783 211836783 G A NEK2 Silent p.I441I 0.40 TCGA-VQ-A8P2-01 1 212154458 212154458 G T INTS7 Missense_Mutation p.P403T 0.37 tolerated(0.39) benign(0.005) TCGA-VQ-A8P2-01 1 212238336 212238336 A G DTL Missense_Mutation p.K202E 0.35 deleterious(0) possibly_damaging(0.573) TCGA-VQ-A8P2-01 1 212515588 212515588 C T PPP2R5A Missense_Mutation p.A180V 0.35 deleterious(0) benign(0.221) TCGA-VQ-A8P2-01 1 212792917 212792917 G A ATF3 3'UTR 0.24 TCGA-VQ-A8P2-01 1 21299497 21299497 T - EIF4G3 Frame_Shift_Del p.T148Lfs*2 0.33 TCGA-VQ-A8P2-01 1 213009404 213009404 C T C1orf227 Missense_Mutation p.E30K 0.13 deleterious(0.01) possibly_damaging(0.486) TCGA-VQ-A8P2-01 1 213134613 213134613 G T VASH2 Intron 0.42 TCGA-VQ-A8P2-01 1 213178621 213178621 A G ANGEL2 Silent p.I296I 0.36 TCGA-VQ-A8P2-01 1 213415984 213415984 G T RPS6KC1 Missense_Mutation p.R965I 0.19 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8P2-01 1 214803964 214803964 G T CENPF Missense_Mutation p.A428S 0.25 probably_damaging(0.996) TCGA-VQ-A8P2-01 1 214826200 214826200 G T CENPF Missense_Mutation p.E2730D 0.39 probably_damaging(0.986) TCGA-VQ-A8P2-01 1 214830653 214830653 A - CENPF Frame_Shift_Del p.S2957Afs*6 0.27 TCGA-VQ-A8P2-01 1 215256759 215256759 G A KCNK2 Missense_Mutation p.G11S 0.55 tolerated_low_confidence(0.1) benign(0.004) TCGA-VQ-A8P2-01 1 215820947 215820947 G A USH2A Missense_Mutation p.T4903I 0.40 probably_damaging(0.978) TCGA-VQ-A8P2-01 1 215847677 215847677 G A USH2A Nonsense_Mutation p.R4526* 0.47 TCGA-VQ-A8P2-01 1 216062311 216062312 - T USH2A Frame_Shift_Ins p.N2560Kfs*8 0.31 TCGA-VQ-A8P2-01 1 216258076 216258076 C T USH2A Missense_Mutation p.A1711T 0.46 benign(0.001) TCGA-VQ-A8P2-01 1 216497038 216497038 C T USH2A Splice_Site p.X443_splice 0.37 TCGA-VQ-A8P2-01 1 216850740 216850740 C T ESRRG Silent p.T55T 0.55 TCGA-VQ-A8P2-01 1 21924938 21924938 A G RAP1GAP Missense_Mutation p.W676R 0.09 deleterious(0.04) possibly_damaging(0.822) TCGA-VQ-A8P2-01 1 21928228 21928228 G A RAP1GAP Missense_Mutation p.S598L 0.14 deleterious(0.01) benign(0.086) TCGA-VQ-A8P2-01 1 21930228 21930228 G A RAP1GAP Intron 0.88 TCGA-VQ-A8P2-01 1 21946508 21946508 C A RAP1GAP Missense_Mutation p.Q70H 0.31 deleterious(0) probably_damaging(0.986) TCGA-VQ-A8P2-01 1 21991792 21991792 G A RAP1GAP 5'UTR 0.58 TCGA-VQ-A8P2-01 1 220152063 220152063 T C EPRS Splice_Site p.X1304_splice 0.35 TCGA-VQ-A8P2-01 1 220153488 220153488 G A EPRS Missense_Mutation p.A1217V 0.30 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 1 22161428 22161428 C T HSPG2 Silent p.S3488S 0.41 TCGA-VQ-A8P2-01 1 22213945 22213947 TCC - HSPG2 In_Frame_Del p.E308del 0.46 TCGA-VQ-A8P2-01 1 22222726 22222726 G A HSPG2 Silent p.R47R 0.13 TCGA-VQ-A8P2-01 1 222838713 222838713 C T MIA3 Missense_Mutation p.R1826W 0.42 deleterious(0.03) possibly_damaging(0.895) TCGA-VQ-A8P2-01 1 22307570 22307570 C T CELA3B Silent p.D89D 0.40 TCGA-VQ-A8P2-01 1 223177682 223177682 C T DISP1 Silent p.S981S 0.16 TCGA-VQ-A8P2-01 1 223396894 223396894 C T SUSD4 Missense_Mutation p.E381K 0.23 deleterious(0) probably_damaging(0.994) TCGA-VQ-A8P2-01 1 223568700 223568700 C T C1orf65 3'UTR 0.39 TCGA-VQ-A8P2-01 1 223934706 223934706 G A CAPN2 Missense_Mutation p.G190R 0.43 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8P2-01 1 22408270 22408270 G A CDC42 Missense_Mutation p.G54E 0.45 deleterious(0.02) probably_damaging(0.991) TCGA-VQ-A8P2-01 1 224491525 224491525 G A NVL Missense_Mutation p.P287L 0.16 deleterious(0) probably_damaging(0.935) TCGA-VQ-A8P2-01 1 224514116 224514116 C T NVL Silent p.A36A 0.36 TCGA-VQ-A8P2-01 1 224586686 224586686 G A WDR26 Silent p.C490C 0.37 TCGA-VQ-A8P2-01 1 224804709 224804709 G A CNIH3 5'UTR 0.36 TCGA-VQ-A8P2-01 1 225594397 225594397 C T LBR Nonsense_Mutation p.W484* 0.45 TCGA-VQ-A8P2-01 1 225600312 225600312 C T LBR Missense_Mutation p.G310R 0.36 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 1 225706917 225706917 C T ENAH Missense_Mutation p.R262H 0.32 deleterious_low_confidence(0.03) unknown(0) TCGA-VQ-A8P2-01 1 225755071 225755071 A G ENAH Silent p.D17D 0.48 TCGA-VQ-A8P2-01 1 226034901 226034901 C T TMEM63A Missense_Mutation p.R755Q 0.36 tolerated(0.26) benign(0.07) TCGA-VQ-A8P2-01 1 226054308 226054308 T G TMEM63A Missense_Mutation p.H214P 0.47 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 1 226075301 226075301 C T LEFTY1 Missense_Mutation p.D179N 0.38 deleterious(0.01) probably_damaging(0.973) TCGA-VQ-A8P2-01 1 226180195 226180195 G A SDE2 Missense_Mutation p.R142W 0.37 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 1 226552832 226552832 G A PARP1 Silent p.G843G 0.49 TCGA-VQ-A8P2-01 1 226568875 226568875 G A PARP1 Silent p.L398L 0.49 TCGA-VQ-A8P2-01 1 227174287 227174287 G A ADCK3 Missense_Mutation p.R598H 0.36 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 1 227935498 227935498 C T SNAP47 Nonsense_Mutation p.R66* 0.36 TCGA-VQ-A8P2-01 1 228003897 228003897 C T PRSS38 Silent p.C85C 0.39 TCGA-VQ-A8P2-01 1 228003939 228003939 G A PRSS38 Silent p.A99A 0.41 TCGA-VQ-A8P2-01 1 228432213 228432213 C A OBSCN Missense_Mutation p.A1233D 0.32 benign(0.027) TCGA-VQ-A8P2-01 1 228433291 228433291 C T OBSCN Missense_Mutation p.T1312I 0.47 benign(0.143) TCGA-VQ-A8P2-01 1 228465465 228465465 C T OBSCN Silent p.Y2684Y 0.33 TCGA-VQ-A8P2-01 1 228467750 228467750 C T OBSCN Missense_Mutation p.A2971V 0.28 probably_damaging(0.999) TCGA-VQ-A8P2-01 1 228509264 228509264 G A OBSCN Missense_Mutation p.E5865K 0.55 benign(0.127) TCGA-VQ-A8P2-01 1 228529892 228529892 G A OBSCN Missense_Mutation p.R6993H 0.31 probably_damaging(0.984) TCGA-VQ-A8P2-01 1 228550283 228550283 C T OBSCN Missense_Mutation p.T7180I 0.12 benign(0.126) TCGA-VQ-A8P2-01 1 228596863 228596863 G A TRIM17 Intron 0.09 TCGA-VQ-A8P2-01 1 228602371 228602371 C T TRIM17 Missense_Mutation p.A135T 0.09 tolerated(0.13) benign(0.056) TCGA-VQ-A8P2-01 1 22913014 22913014 C A EPHA8 Missense_Mutation p.L289M 0.43 tolerated(0.13) possibly_damaging(0.467) TCGA-VQ-A8P2-01 1 22915423 22915423 G T EPHA8 Nonsense_Mutation p.E347* 0.33 TCGA-VQ-A8P2-01 1 22923904 22923904 C T EPHA8 Missense_Mutation p.A622V 0.26 deleterious(0.01) benign(0.221) TCGA-VQ-A8P2-01 1 229600370 229600370 C T NUP133 Splice_Site p.X851_splice 0.33 TCGA-VQ-A8P2-01 1 229730211 229730211 G A TAF5L Missense_Mutation p.R535C 0.09 deleterious(0.02) benign(0.288) TCGA-VQ-A8P2-01 1 229781689 229781689 G A URB2 Silent p.A1293A 0.45 TCGA-VQ-A8P2-01 1 230492859 230492859 G T PGBD5 Silent p.S111S 0.13 TCGA-VQ-A8P2-01 1 230829156 230829156 C T COG2 3'UTR 0.30 TCGA-VQ-A8P2-01 1 230916262 230916262 A T CAPN9 Missense_Mutation p.E430V 0.37 tolerated(0.41) benign(0.371) TCGA-VQ-A8P2-01 1 231081168 231081168 G A TTC13 Silent p.G182G 0.39 TCGA-VQ-A8P2-01 1 231344781 231344781 C T TRIM67 Silent p.D636D 0.45 TCGA-VQ-A8P2-01 1 231401468 231401468 C T GNPAT Missense_Mutation p.A236V 0.29 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 1 231471541 231471541 T C EXOC8 Missense_Mutation p.I651V 0.32 tolerated(0.42) benign(0.003) TCGA-VQ-A8P2-01 1 231472005 231472005 G T EXOC8 Missense_Mutation p.A496D 0.41 tolerated(0.25) benign(0.055) TCGA-VQ-A8P2-01 1 231473095 231473095 G T EXOC8 Missense_Mutation p.L133I 0.43 tolerated(0.49) benign(0.364) TCGA-VQ-A8P2-01 1 23240029 23240029 C T EPHB2 Missense_Mutation p.A977V 0.42 tolerated(0.5) benign(0.014) TCGA-VQ-A8P2-01 1 232577109 232577109 G A SIPA1L2 Silent p.V1190V 0.36 TCGA-VQ-A8P2-01 1 232940695 232940695 G A MAP10 5'UTR 0.44 TCGA-VQ-A8P2-01 1 233749943 233749943 C T KCNK1 Missense_Mutation p.S9L 0.22 tolerated_low_confidence(0.06) benign(0.174) TCGA-VQ-A8P2-01 1 234510071 234510071 T C COA6 Missense_Mutation p.L73S 0.44 tolerated(0.75) benign(0.001) TCGA-VQ-A8P2-01 1 235277209 235277209 G A TOMM20 Silent p.G89G 0.37 TCGA-VQ-A8P2-01 1 235346096 235346096 G T ARID4B Missense_Mutation p.S713Y 0.10 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8P2-01 1 235613556 235613556 G A B3GALNT2 Missense_Mutation p.R490W 0.40 deleterious(0.02) benign(0.209) TCGA-VQ-A8P2-01 1 235860530 235860530 C T LYST Missense_Mutation p.V3473M 0.38 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8P2-01 1 235872510 235872510 G A LYST Missense_Mutation p.R3342W 0.40 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 1 23636889 23636889 G T HNRNPR 3'UTR 0.35 TCGA-VQ-A8P2-01 1 23637527 23637527 C T HNRNPR Missense_Mutation p.R444H 0.28 tolerated(0.72) unknown(0) TCGA-VQ-A8P2-01 1 236381858 236381858 T G ERO1LB Missense_Mutation p.R454S 0.49 tolerated(0.25) benign(0.155) TCGA-VQ-A8P2-01 1 23645017 23645017 C T HNRNPR Missense_Mutation p.A329T 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A8P2-01 1 236646907 236646907 C T EDARADD 3'Flank 0.41 TCGA-VQ-A8P2-01 1 236647531 236647531 C T EDARADD 3'Flank 0.37 TCGA-VQ-A8P2-01 1 236925893 236925893 G A ACTN2 Missense_Mutation p.A887T 0.44 tolerated(0.13) probably_damaging(0.999) TCGA-VQ-A8P2-01 1 236987492 236987492 G A MTR Missense_Mutation p.A280T 0.45 tolerated(1) benign(0.103) TCGA-VQ-A8P2-01 1 237038037 237038037 C A MTR Missense_Mutation p.L829M 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A8P2-01 1 237802389 237802389 T C RYR2 Silent p.L2335L 0.24 TCGA-VQ-A8P2-01 1 237872339 237872339 A G RYR2 Silent p.T3361T 0.27 TCGA-VQ-A8P2-01 1 237890471 237890471 C T RYR2 Missense_Mutation p.R3604W 0.17 probably_damaging(0.997) TCGA-VQ-A8P2-01 1 237919631 237919631 G A RYR2 Missense_Mutation p.R3730Q 0.36 possibly_damaging(0.849) TCGA-VQ-A8P2-01 1 23954377 23954377 A G MDS2 5'UTR 0.46 TCGA-VQ-A8P2-01 1 240071617 240071617 G A CHRM3 Missense_Mutation p.S289N 0.42 deleterious(0.05) benign(0.065) TCGA-VQ-A8P2-01 1 24124305 24124305 G A GALE Silent p.Y136Y 0.34 TCGA-VQ-A8P2-01 1 241712983 241712983 G A KMO Missense_Mutation p.R44Q 0.13 deleterious(0) probably_damaging(0.993) TCGA-VQ-A8P2-01 1 241753558 241753558 A - KMO Frame_Shift_Del p.K420Rfs*2 0.10 TCGA-VQ-A8P2-01 1 241755417 241755417 G T KMO Missense_Mutation p.D475Y 0.27 deleterious_low_confidence(0.01) benign(0.041) TCGA-VQ-A8P2-01 1 241797103 241797103 T C CHML Missense_Mutation p.N656D 0.42 tolerated_low_confidence(0.08) benign(0.003) TCGA-VQ-A8P2-01 1 241797861 241797861 C T CHML Missense_Mutation p.R403H 0.38 tolerated(0.06) benign(0.057) TCGA-VQ-A8P2-01 1 242035395 242035395 G A EXO1 Silent p.K443K 0.46 TCGA-VQ-A8P2-01 1 243303262 243303262 G A CEP170 Missense_Mutation p.R1403W 0.20 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 1 243828096 243828096 G A AKT3 Missense_Mutation p.H88Y 0.40 tolerated(0.32) probably_damaging(0.999) TCGA-VQ-A8P2-01 1 245006391 245006391 T C COX20 Silent p.I90I 0.42 TCGA-VQ-A8P2-01 1 245704112 245704112 C T KIF26B Missense_Mutation p.R404W 0.28 deleterious(0.02) unknown(0) TCGA-VQ-A8P2-01 1 245862193 245862193 C T KIF26B Missense_Mutation p.A2011V 0.39 tolerated(0.76) unknown(0) TCGA-VQ-A8P2-01 1 246810912 246810912 C T CNST Missense_Mutation p.A470V 0.40 tolerated(0.21) benign(0.089) TCGA-VQ-A8P2-01 1 247016545 247016545 G A AHCTF1 Missense_Mutation p.P1480S 0.39 tolerated_low_confidence(0.08) benign(0.319) TCGA-VQ-A8P2-01 1 247051509 247051509 G A AHCTF1 Silent p.D774D 0.41 TCGA-VQ-A8P2-01 1 247263802 247263802 G A ZNF669 Silent p.C423C 0.11 TCGA-VQ-A8P2-01 1 247582076 247582076 G T NLRP3 5'UTR 0.25 TCGA-VQ-A8P2-01 1 247587176 247587176 T C NLRP3 Missense_Mutation p.V144A 0.24 deleterious(0) benign(0.257) TCGA-VQ-A8P2-01 1 247588368 247588368 A G NLRP3 Silent p.E541E 0.27 TCGA-VQ-A8P2-01 1 247695039 247695039 T C OR2C3 Missense_Mutation p.M259V 0.26 tolerated(0.16) benign(0.197) TCGA-VQ-A8P2-01 1 247875761 247875761 C T OR6F1 Silent p.L99L 0.35 TCGA-VQ-A8P2-01 1 248263078 248263078 G A OR2L13 Missense_Mutation p.R134H 0.34 tolerated(0.28) benign(0.002) TCGA-VQ-A8P2-01 1 248263372 248263372 G A OR2L13 Missense_Mutation p.G232E 0.40 deleterious(0) probably_damaging(0.992) TCGA-VQ-A8P2-01 1 248308583 248308583 T C OR2M5 Missense_Mutation p.M45T 0.39 tolerated(0.08) benign(0.046) TCGA-VQ-A8P2-01 1 248366432 248366432 C - OR2M3 Frame_Shift_Del p.T23Pfs*108 0.29 TCGA-VQ-A8P2-01 1 248402539 248402539 C A OR2M4 Missense_Mutation p.F103L 0.35 tolerated(0.88) benign(0.032) TCGA-VQ-A8P2-01 1 248436260 248436261 - G OR2T33 Frame_Shift_Ins p.L286Pfs*9 0.26 TCGA-VQ-A8P2-01 1 25153592 25153592 C T CLIC4 Missense_Mutation p.P134S 0.45 deleterious(0.01) benign(0.004) TCGA-VQ-A8P2-01 1 25617137 25617137 G A RHD Missense_Mutation p.R114Q 0.37 tolerated(0.49) benign(0.03) TCGA-VQ-A8P2-01 1 26135168 26135168 C T SEPN1 Missense_Mutation p.P212L 0.10 tolerated(0.05) benign(0.009) TCGA-VQ-A8P2-01 1 26150217 26150217 C T MTFR1L Missense_Mutation p.P36L 0.33 deleterious(0) probably_damaging(0.994) TCGA-VQ-A8P2-01 1 26190287 26190287 C T PAQR7 Missense_Mutation p.R15Q 0.13 tolerated(1) benign(0) TCGA-VQ-A8P2-01 1 26378323 26378323 C A TRIM63 3'UTR 0.15 TCGA-VQ-A8P2-01 1 26448875 26448875 C A PDIK1L Missense_Mutation p.P278H 0.41 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 1 26517899 26517899 G A CATSPER4 Missense_Mutation p.R112H 0.15 deleterious(0.04) probably_damaging(0.961) TCGA-VQ-A8P2-01 1 26688452 26688452 C T ZNF683 Missense_Mutation p.G402E 0.38 deleterious(0.02) benign(0.258) TCGA-VQ-A8P2-01 1 26872519 26872519 G A RPS6KA1 Missense_Mutation p.R43Q 0.28 tolerated(0.64) benign(0) TCGA-VQ-A8P2-01 1 26878139 26878139 C T RPS6KA1 Silent p.F140F 0.10 TCGA-VQ-A8P2-01 1 27088682 27088682 C - ARID1A Frame_Shift_Del p.Q766Sfs*67 0.39 TCGA-VQ-A8P2-01 1 27101277 27101277 G A ARID1A Missense_Mutation p.G1520D 0.41 unknown(0) TCGA-VQ-A8P2-01 1 27180278 27180278 G A ZDHHC18 Missense_Mutation p.D371N 0.44 tolerated(0.4) benign(0.001) TCGA-VQ-A8P2-01 1 27238275 27238275 G T NR0B2 3'UTR 0.55 TCGA-VQ-A8P2-01 1 27278030 27278030 C T C1orf172 Missense_Mutation p.S281N 0.48 tolerated(0.14) probably_damaging(0.995) TCGA-VQ-A8P2-01 1 27332834 27332834 C A FAM46B Silent p.R293R 0.40 TCGA-VQ-A8P2-01 1 27683215 27683215 C T MAP3K6 Silent p.P1130P 0.65 TCGA-VQ-A8P2-01 1 27688661 27688661 C T MAP3K6 Missense_Mutation p.G446R 0.41 deleterious(0.05) probably_damaging(0.916) TCGA-VQ-A8P2-01 1 27875000 27875000 G A AHDC1 Silent p.N1209N 0.39 TCGA-VQ-A8P2-01 1 27875319 27875319 G A AHDC1 Missense_Mutation p.A1103V 0.30 tolerated(0.1) benign(0) TCGA-VQ-A8P2-01 1 27876804 27876804 C T AHDC1 Missense_Mutation p.S608N 0.06 deleterious(0.05) benign(0.383) TCGA-VQ-A8P2-01 1 27876840 27876840 G C AHDC1 Missense_Mutation p.S596C 0.38 tolerated(0.06) possibly_damaging(0.843) TCGA-VQ-A8P2-01 1 27877168 27877168 G A AHDC1 Missense_Mutation p.R487W 0.50 deleterious(0) possibly_damaging(0.835) TCGA-VQ-A8P2-01 1 27992916 27992916 G A IFI6 Silent p.L131L 0.42 TCGA-VQ-A8P2-01 1 28053990 28053990 G A FAM76A Missense_Mutation p.R30Q 0.45 deleterious(0) possibly_damaging(0.71) TCGA-VQ-A8P2-01 1 28208556 28208556 G A THEMIS2 Missense_Mutation p.V241I 0.38 tolerated(1) benign(0.007) TCGA-VQ-A8P2-01 1 28208951 28208951 C T THEMIS2 Silent p.D372D 0.48 TCGA-VQ-A8P2-01 1 28223594 28223595 - A RPA2 Frame_Shift_Ins p.E150Gfs*5 0.22 TCGA-VQ-A8P2-01 1 28282511 28282511 C T SMPDL3B Missense_Mutation p.T308I 0.38 deleterious(0) probably_damaging(0.973) TCGA-VQ-A8P2-01 1 28293080 28293080 G A XKR8 Missense_Mutation p.R186H 0.16 deleterious(0.01) probably_damaging(0.924) TCGA-VQ-A8P2-01 1 28293217 28293217 C T XKR8 Missense_Mutation p.H232Y 0.27 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8P2-01 1 28477529 28477529 C T PTAFR Missense_Mutation p.E2K 0.14 tolerated_low_confidence(0.17) benign(0.079) TCGA-VQ-A8P2-01 1 28661075 28661075 G A MED18 Missense_Mutation p.R74H 0.13 tolerated(0.19) benign(0.029) TCGA-VQ-A8P2-01 1 28800639 28800639 C T PHACTR4 Missense_Mutation p.P476L 0.40 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 1 29189269 29189269 G A OPRD1 Missense_Mutation p.C198Y 0.42 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 1 2938364 2938364 C T ACTRT2 Silent p.I38I 0.24 TCGA-VQ-A8P2-01 1 29391606 29391606 G A EPB41 Missense_Mutation p.R707H 0.31 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 1 2939406 2939406 C T ACTRT2 3'UTR 0.12 TCGA-VQ-A8P2-01 1 29651722 29651722 G A PTPRU Missense_Mutation p.G1388S 0.37 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 1 31467987 31467987 T C PUM1 Silent p.G267G 0.14 TCGA-VQ-A8P2-01 1 31896677 31896677 G A SERINC2 Silent p.P68P 0.44 TCGA-VQ-A8P2-01 1 32158740 32158740 G A COL16A1 Missense_Mutation p.R342W 0.16 unknown(0) TCGA-VQ-A8P2-01 1 32204194 32204194 G T BAI2 Missense_Mutation p.S880Y 0.47 deleterious(0) probably_damaging(0.949) TCGA-VQ-A8P2-01 1 32256503 32256503 G A SPOCD1 Missense_Mutation p.R1118C 0.33 tolerated(1) benign(0) TCGA-VQ-A8P2-01 1 32542775 32542775 G - TMEM39B Frame_Shift_Del p.K151Rfs*39 0.26 TCGA-VQ-A8P2-01 1 32670244 32670244 C T CCDC28B Intron 0.07 TCGA-VQ-A8P2-01 1 32671846 32671846 G A IQCC Missense_Mutation p.G125D 0.41 tolerated(0.1) benign(0.299) TCGA-VQ-A8P2-01 1 32673421 32673421 A G IQCC Missense_Mutation p.H460R 0.34 tolerated(0.23) benign(0.015) TCGA-VQ-A8P2-01 1 32797309 32797309 C T HDAC1 Missense_Mutation p.P374L 0.36 deleterious(0.03) benign(0.11) TCGA-VQ-A8P2-01 1 32842164 32842164 G A BSDC1 Silent p.L302L 0.45 TCGA-VQ-A8P2-01 1 33149691 33149691 C A SYNC Splice_Site p.X453_splice 0.40 TCGA-VQ-A8P2-01 1 33276201 33276201 T C YARS Missense_Mutation p.Q124R 0.32 deleterious(0) probably_damaging(0.994) TCGA-VQ-A8P2-01 1 3328010 3328010 G A PRDM16 Missense_Mutation p.A417T 0.30 deleterious(0) probably_damaging(0.986) TCGA-VQ-A8P2-01 1 3329104 3329104 C T PRDM16 Silent p.D781D 0.28 TCGA-VQ-A8P2-01 1 3334497 3334497 C T PRDM16 Missense_Mutation p.R933W 0.28 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8P2-01 1 3342780 3342780 C T PRDM16 Missense_Mutation p.T1092I 0.32 deleterious(0.01) benign(0.197) TCGA-VQ-A8P2-01 1 3350389 3350389 C T PRDM16 3'UTR 0.47 TCGA-VQ-A8P2-01 1 33625513 33625513 G A TRIM62 Silent p.G179G 0.17 TCGA-VQ-A8P2-01 1 33646803 33646803 G A TRIM62 Silent p.S77S 0.67 TCGA-VQ-A8P2-01 1 33820694 33820694 G T PHC2 Silent p.A379A 0.20 TCGA-VQ-A8P2-01 1 33959142 33959142 G T ZSCAN20 Missense_Mutation p.Q600H 0.27 deleterious(0.03) benign(0.01) TCGA-VQ-A8P2-01 1 34083217 34083217 G A CSMD2 Missense_Mutation p.T1903M 0.17 deleterious(0) possibly_damaging(0.873) TCGA-VQ-A8P2-01 1 34128550 34128550 C T CSMD2 Missense_Mutation p.V1359I 0.38 tolerated(0.2) benign(0.009) TCGA-VQ-A8P2-01 1 34164389 34164389 G A CSMD2 Missense_Mutation p.R1257C 0.37 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8P2-01 1 3417855 3417855 A G MEGF6 Missense_Mutation p.W778R 0.27 deleterious(0) probably_damaging(0.966) TCGA-VQ-A8P2-01 1 34254315 34254315 T C CSMD2 Splice_Site p.X477_splice 0.42 TCGA-VQ-A8P2-01 1 35227196 35227196 C T GJB4 Missense_Mutation p.P114L 0.50 tolerated(0.26) benign(0.001) TCGA-VQ-A8P2-01 1 35370558 35370558 G A DLGAP3 Nonsense_Mutation p.R143* 0.32 TCGA-VQ-A8P2-01 1 35579864 35579864 C T ZMYM1 Silent p.V811V 0.47 TCGA-VQ-A8P2-01 1 35854677 35854677 C A ZMYM4 Missense_Mutation p.F810L 0.21 tolerated(0.05) benign(0.32) TCGA-VQ-A8P2-01 1 36019999 36019999 A G KIAA0319L Missense_Mutation p.Y32H 0.14 tolerated_low_confidence(0.56) benign(0.004) TCGA-VQ-A8P2-01 1 36026033 36026033 C T NCDN Missense_Mutation p.A94V 0.19 tolerated(0.38) benign(0.3) TCGA-VQ-A8P2-01 1 36074953 36074953 C T PSMB2 Silent p.A114A 0.43 TCGA-VQ-A8P2-01 1 36204833 36204833 G A CLSPN Nonsense_Mutation p.R1112* 0.45 TCGA-VQ-A8P2-01 1 36214091 36214091 C T CLSPN Missense_Mutation p.G796E 0.13 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8P2-01 1 36291316 36291316 G A AGO4 Silent p.P175P 0.42 TCGA-VQ-A8P2-01 1 36557517 36557517 C T ADPRHL2 Missense_Mutation p.R175W 0.41 deleterious(0) probably_damaging(0.941) TCGA-VQ-A8P2-01 1 36563523 36563523 C T COL8A2 Missense_Mutation p.A587T 0.33 tolerated(0.09) possibly_damaging(0.781) TCGA-VQ-A8P2-01 1 36643647 36643647 C A MAP7D1 Missense_Mutation p.P518H 0.27 possibly_damaging(0.894) TCGA-VQ-A8P2-01 1 36645621 36645621 C T MAP7D1 Missense_Mutation p.A823V 0.36 unknown(0) TCGA-VQ-A8P2-01 1 36767269 36767269 A G THRAP3 Missense_Mutation p.Y873C 0.30 deleterious(0) probably_damaging(0.993) TCGA-VQ-A8P2-01 1 36814409 36814409 G A STK40 Missense_Mutation p.R211W 0.60 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 1 3697550 3697550 C A LRRC47 3'UTR 0.42 TCGA-VQ-A8P2-01 1 37307337 37307337 G A GRIK3 Silent p.H510H 0.15 TCGA-VQ-A8P2-01 1 38030640 38030640 G A DNALI1 Missense_Mutation p.G274D 0.32 tolerated(0.11) probably_damaging(0.971) TCGA-VQ-A8P2-01 1 38082174 38082174 C T RSPO1 Missense_Mutation p.D90N 0.09 deleterious(0) benign(0.327) TCGA-VQ-A8P2-01 1 38149068 38149068 C T C1orf109 Missense_Mutation p.G166E 0.38 tolerated(0.58) benign(0.011) TCGA-VQ-A8P2-01 1 38184421 38184421 G T EPHA10 Missense_Mutation p.L942M 0.45 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A8P2-01 1 38409312 38409313 - A INPP5B Frame_Shift_Ins p.G94Wfs*14 0.30 TCGA-VQ-A8P2-01 1 38409324 38409324 G A INPP5B Missense_Mutation p.L90F 0.24 tolerated(0.24) benign(0.298) TCGA-VQ-A8P2-01 1 38463367 38463367 C T FHL3 Missense_Mutation p.R226H 0.44 deleterious(0.01) possibly_damaging(0.756) TCGA-VQ-A8P2-01 1 38463733 38463733 G A FHL3 Missense_Mutation p.P135S 0.44 deleterious(0.01) possibly_damaging(0.732) TCGA-VQ-A8P2-01 1 38511623 38511623 G A POU3F1 Missense_Mutation p.R265W 0.51 deleterious(0) probably_damaging(0.966) TCGA-VQ-A8P2-01 1 39381264 39381264 C A RHBDL2 Missense_Mutation p.R122M 0.33 deleterious(0) probably_damaging(0.923) TCGA-VQ-A8P2-01 1 39381326 39381326 C T RHBDL2 Silent p.L101L 0.42 TCGA-VQ-A8P2-01 1 39715765 39715765 G T MACF1 Missense_Mutation p.G121V 0.37 probably_damaging(0.973) TCGA-VQ-A8P2-01 1 39798549 39798549 G A MACF1 Intron 0.34 TCGA-VQ-A8P2-01 1 39799008 39799008 G A MACF1 Intron 0.40 TCGA-VQ-A8P2-01 1 39800561 39800561 C T MACF1 Intron 0.38 TCGA-VQ-A8P2-01 1 39853492 39853492 C T MACF1 Missense_Mutation p.A2931V 0.43 benign(0.004) TCGA-VQ-A8P2-01 1 39853991 39853991 C T MACF1 Silent p.I3097I 0.11 TCGA-VQ-A8P2-01 1 39913486 39913486 C T MACF1 Silent p.S4569S 0.41 TCGA-VQ-A8P2-01 1 39914434 39914434 C T MACF1 Missense_Mutation p.R4694W 0.22 probably_damaging(1) TCGA-VQ-A8P2-01 1 39919448 39919448 C A MACF1 Missense_Mutation p.L4879M 0.35 probably_damaging(1) TCGA-VQ-A8P2-01 1 40230375 40230375 C T BMP8B Missense_Mutation p.R263Q 0.33 deleterious(0.01) benign(0.124) TCGA-VQ-A8P2-01 1 40872514 40872514 C T SMAP2 Silent p.L70L 0.46 TCGA-VQ-A8P2-01 1 41284342 41284342 C T KCNQ4 Missense_Mutation p.A233V 0.44 deleterious(0) probably_damaging(0.959) TCGA-VQ-A8P2-01 1 41288061 41288061 C T KCNQ4 Missense_Mutation p.L373F 0.48 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 1 41461704 41461705 - A CTPS1 Frame_Shift_Ins p.M281Nfs*10 0.27 TCGA-VQ-A8P2-01 1 41475885 41475885 G A CTPS1 Missense_Mutation p.E582K 0.40 tolerated(0.07) benign(0.28) TCGA-VQ-A8P2-01 1 41536331 41536331 C T SCMH1 Silent p.P337P 0.45 TCGA-VQ-A8P2-01 1 42047968 42047968 G A HIVEP3 Missense_Mutation p.A834V 0.08 benign(0.341) TCGA-VQ-A8P2-01 1 42050152 42050152 G A HIVEP3 Missense_Mutation p.S106L 0.42 possibly_damaging(0.536) TCGA-VQ-A8P2-01 1 42671479 42671479 G A FOXJ3 Missense_Mutation p.S195L 0.32 tolerated(0.16) benign(0.147) TCGA-VQ-A8P2-01 1 43221220 43221220 G A LEPRE1 Missense_Mutation p.P390L 0.38 deleterious(0) probably_damaging(0.978) TCGA-VQ-A8P2-01 1 43223532 43223532 G A LEPRE1 Silent p.D334D 0.42 TCGA-VQ-A8P2-01 1 43308815 43308815 C T ERMAP Missense_Mutation p.P447L 0.39 deleterious(0.02) benign(0.004) TCGA-VQ-A8P2-01 1 43891606 43891606 C T SZT2 Missense_Mutation p.P972L 0.34 tolerated(0.32) benign(0.002) TCGA-VQ-A8P2-01 1 43913814 43913814 C T SZT2 Missense_Mutation p.R3153C 0.45 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 1 43917429 43917429 C T SZT2 3'UTR 0.41 TCGA-VQ-A8P2-01 1 44071290 44071290 C T PTPRF Silent p.D1160D 0.24 TCGA-VQ-A8P2-01 1 44149434 44149434 G A KDM4A Missense_Mutation p.R605H 0.53 tolerated(0.05) probably_damaging(0.964) TCGA-VQ-A8P2-01 1 44157192 44157192 G T KDM4A Missense_Mutation p.K756N 0.33 tolerated(0.26) benign(0.135) TCGA-VQ-A8P2-01 1 44290469 44290470 - A ST3GAL3 Frame_Shift_Ins p.L110Ifs*33 0.30 TCGA-VQ-A8P2-01 1 44436358 44436358 C A DPH2 Missense_Mutation p.L80M 0.34 deleterious(0.04) possibly_damaging(0.806) TCGA-VQ-A8P2-01 1 44437080 44437080 G A DPH2 Missense_Mutation p.R169H 0.33 tolerated(0.55) benign(0.005) TCGA-VQ-A8P2-01 1 44447440 44447440 C T B4GALT2 Silent p.G160G 0.12 TCGA-VQ-A8P2-01 1 44468234 44468234 C T SLC6A9 Missense_Mutation p.G343S 0.32 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8P2-01 1 44482816 44482816 G A SLC6A9 5'UTR 0.29 TCGA-VQ-A8P2-01 1 44680069 44680069 G T DMAP1 Missense_Mutation p.E51D 0.07 deleterious(0.01) possibly_damaging(0.562) TCGA-VQ-A8P2-01 1 44684006 44684006 G A DMAP1 Silent p.S139S 0.42 TCGA-VQ-A8P2-01 1 44774044 44774044 G T ERI3 Silent p.G232G 0.35 TCGA-VQ-A8P2-01 1 44804986 44804986 C T ERI3 Missense_Mutation p.A74T 0.36 tolerated_low_confidence(0.06) benign(0.102) TCGA-VQ-A8P2-01 1 44877943 44877943 G A RNF220 Silent p.V58V 0.05 TCGA-VQ-A8P2-01 1 45115422 45115422 A G RNF220 Missense_Mutation p.Y512C 0.08 deleterious(0.02) probably_damaging(0.975) TCGA-VQ-A8P2-01 1 45120404 45120404 C T TMEM53 Missense_Mutation p.E221K 0.48 tolerated(0.92) benign(0.005) TCGA-VQ-A8P2-01 1 45244120 45244120 G A RPS8 Intron 0.41 TCGA-VQ-A8P2-01 1 45250969 45250969 G T BEST4 Silent p.T241T 0.33 TCGA-VQ-A8P2-01 1 45288194 45288194 G - PTCH2 Frame_Shift_Del p.L1169Cfs*85 0.21 TCGA-VQ-A8P2-01 1 45292921 45292921 C T PTCH2 Missense_Mutation p.R811H 0.40 tolerated(0.11) benign(0.006) TCGA-VQ-A8P2-01 1 45345609 45345609 G A EIF2B3 Nonsense_Mutation p.R286* 0.31 TCGA-VQ-A8P2-01 1 45479616 45479616 C T UROD Silent p.G170G 0.08 TCGA-VQ-A8P2-01 1 45516751 45516751 C A ZSWIM5 Missense_Mutation p.S476I 0.37 tolerated(0.12) unknown(0) TCGA-VQ-A8P2-01 1 46034902 46034902 G T AKR1A1 Splice_Site p.X304_splice 0.49 TCGA-VQ-A8P2-01 1 46073031 46073031 G A NASP Missense_Mutation p.A150T 0.38 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 1 46099955 46099955 G T GPBP1L1 Intron 0.33 TCGA-VQ-A8P2-01 1 46120300 46120300 G T GPBP1L1 Missense_Mutation p.A131D 0.38 deleterious(0.02) benign(0.217) TCGA-VQ-A8P2-01 1 46496691 46496691 G A MAST2 Silent p.R907R 0.45 TCGA-VQ-A8P2-01 1 46751312 46751312 G T LRRC41 Missense_Mutation p.P406H 0.11 tolerated(0.16) benign(0.079) TCGA-VQ-A8P2-01 1 46812745 46812745 G A NSUN4 Missense_Mutation p.C197Y 0.29 deleterious(0) probably_damaging(0.979) TCGA-VQ-A8P2-01 1 46976184 46976184 G A DMBX1 Missense_Mutation p.R64H 0.22 deleterious(0) probably_damaging(0.961) TCGA-VQ-A8P2-01 1 47024441 47024441 C T MKNK1 Missense_Mutation p.A402T 0.46 deleterious(0.02) possibly_damaging(0.731) TCGA-VQ-A8P2-01 1 47119500 47119500 C T ATPAF1 Missense_Mutation p.A200T 0.28 deleterious(0.02) benign(0.437) TCGA-VQ-A8P2-01 1 47339001 47339001 C T CYP4Z2P RNA 0.46 TCGA-VQ-A8P2-01 1 47395885 47395885 G A CYP4A11 Missense_Mutation p.P488S 0.38 deleterious(0.01) possibly_damaging(0.896) TCGA-VQ-A8P2-01 1 47400674 47400674 G A CYP4A11 Missense_Mutation p.T263I 0.15 deleterious(0.01) probably_damaging(0.973) TCGA-VQ-A8P2-01 1 47400715 47400715 G A CYP4A11 Silent p.G249G 0.33 TCGA-VQ-A8P2-01 1 47550401 47550401 G A CYP4Z1 Missense_Mutation p.S201N 0.14 tolerated(1) possibly_damaging(0.787) TCGA-VQ-A8P2-01 1 47685826 47685826 G A TAL1 Missense_Mutation p.R188W 0.46 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 1 47691506 47691506 G A TAL1 Missense_Mutation p.R19W 0.50 deleterious_low_confidence(0) benign(0.249) TCGA-VQ-A8P2-01 1 4772155 4772155 G A AJAP1 Silent p.P75P 0.31 TCGA-VQ-A8P2-01 1 47838758 47838759 - T CMPK1 Frame_Shift_Ins p.D153* 0.20 TCGA-VQ-A8P2-01 1 47882314 47882314 C T FOXE3 Silent p.R109R 0.36 TCGA-VQ-A8P2-01 1 47904537 47904537 C T FOXD2 Missense_Mutation p.R244C 0.41 deleterious_low_confidence(0) unknown(0) TCGA-VQ-A8P2-01 1 48865130 48865130 G A SPATA6 Missense_Mutation p.R225C 0.44 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8P2-01 1 50666873 50666873 A T ELAVL4 3'UTR 0.31 TCGA-VQ-A8P2-01 1 50884397 50884397 C T DMRTA2 Silent p.E523E 0.38 TCGA-VQ-A8P2-01 1 50885025 50885025 C T DMRTA2 Missense_Mutation p.R314Q 0.11 deleterious(0.01) possibly_damaging(0.857) TCGA-VQ-A8P2-01 1 51121160 51121160 C T FAF1 Missense_Mutation p.R233H 0.38 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 1 51204594 51204595 - T FAF1 Frame_Shift_Ins p.N164Kfs*18 0.24 TCGA-VQ-A8P2-01 1 51267336 51267336 C T FAF1 Missense_Mutation p.G43D 0.42 tolerated(0.39) benign(0.034) TCGA-VQ-A8P2-01 1 51736933 51736933 C T RNF11 Missense_Mutation p.T135M 0.13 deleterious(0.01) benign(0.116) TCGA-VQ-A8P2-01 1 52551818 52551818 T C BTF3L4 Silent p.I135I 0.37 TCGA-VQ-A8P2-01 1 52705092 52705092 G T ZFYVE9 Missense_Mutation p.S668I 0.29 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 1 52851603 52851603 G A ORC1 Missense_Mutation p.R468C 0.21 tolerated(0.08) benign(0.009) TCGA-VQ-A8P2-01 1 52871508 52871508 T G PRPF38A Missense_Mutation p.F96C 0.31 deleterious(0) possibly_damaging(0.737) TCGA-VQ-A8P2-01 1 52940507 52940507 G A ZCCHC11 Silent p.G908G 0.39 TCGA-VQ-A8P2-01 1 52991671 52991671 A G ZCCHC11 Silent p.S94S 0.11 TCGA-VQ-A8P2-01 1 53553767 53553767 C T SLC1A7 Missense_Mutation p.V533I 0.31 tolerated_low_confidence(0.27) benign(0.002) TCGA-VQ-A8P2-01 1 53608075 53608075 C T SLC1A7 Missense_Mutation p.R16Q 0.43 tolerated(0.16) benign(0.007) TCGA-VQ-A8P2-01 1 53720789 53720789 C T LRP8 Missense_Mutation p.V835M 0.44 tolerated(0.09) possibly_damaging(0.738) TCGA-VQ-A8P2-01 1 53728178 53728178 C T LRP8 Missense_Mutation p.G572S 0.36 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 1 54060075 54060075 G - GLIS1 Frame_Shift_Del p.Y168Ifs*116 0.40 TCGA-VQ-A8P2-01 1 54354635 54354635 T C YIPF1 5'UTR 0.39 TCGA-VQ-A8P2-01 1 54395744 54395744 C A HSPB11 Missense_Mutation p.R58M 0.42 deleterious(0.04) possibly_damaging(0.697) TCGA-VQ-A8P2-01 1 54433592 54433592 G T LRRC42 Missense_Mutation p.D423Y 0.42 deleterious(0) probably_damaging(0.93) TCGA-VQ-A8P2-01 1 54433606 54433606 C T LRRC42 Silent p.S427S 0.45 TCGA-VQ-A8P2-01 1 55136498 55136498 C T MROH7 Missense_Mutation p.R499W 0.21 deleterious(0) benign(0.08) TCGA-VQ-A8P2-01 1 55152111 55152111 G A MROH7 Missense_Mutation p.V901I 0.48 tolerated(0.47) benign(0.006) TCGA-VQ-A8P2-01 1 55319146 55319146 C T DHCR24 Missense_Mutation p.C453Y 0.45 deleterious(0.01) benign(0.158) TCGA-VQ-A8P2-01 1 55457874 55457874 C T TMEM61 3'UTR 0.27 TCGA-VQ-A8P2-01 1 57756704 57756704 C A DAB1 5'UTR 0.34 TCGA-VQ-A8P2-01 1 60299131 60299131 G A HOOK1 Missense_Mutation p.E110K 0.33 deleterious(0.01) benign(0.052) TCGA-VQ-A8P2-01 1 60375597 60375597 C T CYP2J2 Silent p.L240L 0.34 TCGA-VQ-A8P2-01 1 60377372 60377372 C T CYP2J2 Missense_Mutation p.G198R 0.18 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8P2-01 1 60381764 60381764 C T CYP2J2 Silent p.K73K 0.42 TCGA-VQ-A8P2-01 1 60463377 60463377 G A C1orf87 Missense_Mutation p.P462S 0.17 tolerated(0.22) benign(0.013) TCGA-VQ-A8P2-01 1 61553959 61553959 G A NFIA Missense_Mutation p.V101M 0.17 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 1 6185294 6185294 C A CHD5 Splice_Site p.X1421_splice 0.38 TCGA-VQ-A8P2-01 1 6189105 6189105 C T CHD5 Missense_Mutation p.G1138S 0.37 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8P2-01 1 6202195 6202195 C T CHD5 Missense_Mutation p.R810H 0.39 deleterious(0) probably_damaging(0.981) TCGA-VQ-A8P2-01 1 6211189 6211189 C T CHD5 Silent p.S299S 0.41 TCGA-VQ-A8P2-01 1 6212571 6212571 T G CHD5 Missense_Mutation p.K257N 0.42 deleterious(0) probably_damaging(0.942) TCGA-VQ-A8P2-01 1 62393477 62393479 GAA - INADL In_Frame_Del p.E1218del 0.24 TCGA-VQ-A8P2-01 1 6246851 6246852 - T RPL22 Frame_Shift_Ins p.Y90Ifs*6 0.24 TCGA-VQ-A8P2-01 1 6257785 6257785 T - RPL22 Frame_Shift_Del p.K15Rfs*5 0.33 TCGA-VQ-A8P2-01 1 6266700 6266700 G A RNF207 Silent p.P35P 0.21 TCGA-VQ-A8P2-01 1 6311552 6311552 C T GPR153 Silent p.A275A 0.22 TCGA-VQ-A8P2-01 1 64120125 64120125 C T PGM1 Silent p.N547N 0.43 TCGA-VQ-A8P2-01 1 6500414 6500414 G A ESPN Missense_Mutation p.A197T 0.46 deleterious(0) possibly_damaging(0.675) TCGA-VQ-A8P2-01 1 6504600 6504600 G A ESPN Silent p.P350P 0.41 TCGA-VQ-A8P2-01 1 65143851 65143851 T C CACHD1 Silent p.F983F 0.27 TCGA-VQ-A8P2-01 1 6517424 6517424 G A ESPN Silent p.E803E 0.60 TCGA-VQ-A8P2-01 1 6522202 6522202 G A TNFRSF25 Silent p.H268H 0.14 TCGA-VQ-A8P2-01 1 65309794 65309794 T A JAK1 Missense_Mutation p.I786F 0.39 deleterious(0) probably_damaging(0.993) TCGA-VQ-A8P2-01 1 65860716 65860716 G A DNAJC6 Splice_Site p.X680_splice 0.35 TCGA-VQ-A8P2-01 1 6639672 6639672 G T TAS1R1 3'UTR 0.41 TCGA-VQ-A8P2-01 1 6649214 6649214 G A ZBTB48 Missense_Mutation p.G670D 0.46 tolerated_low_confidence(0.95) benign(0.001) TCGA-VQ-A8P2-01 1 67288095 67288095 C A WDR78 Missense_Mutation p.Q815H 0.14 tolerated(0.08) benign(0.248) TCGA-VQ-A8P2-01 1 67428799 67428799 C T MIER1 Missense_Mutation p.A243V 0.29 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8P2-01 1 67469942 67469942 C T SLC35D1 3'UTR 0.50 TCGA-VQ-A8P2-01 1 67880951 67880951 C A SERBP1 Missense_Mutation p.E356D 0.14 tolerated(0.19) benign(0.082) TCGA-VQ-A8P2-01 1 68564283 68564283 C T WLS 3'UTR 0.09 TCGA-VQ-A8P2-01 1 68910555 68910555 G A RPE65 Missense_Mutation p.T86I 0.15 deleterious(0) probably_damaging(0.992) TCGA-VQ-A8P2-01 1 71512764 71512764 G A PTGER3 Missense_Mutation p.A166V 0.50 deleterious(0) possibly_damaging(0.851) TCGA-VQ-A8P2-01 1 71536662 71536662 G A ZRANB2 Silent p.D177D 0.46 TCGA-VQ-A8P2-01 1 71873107 71873107 A C NEGR1 3'UTR 0.31 TCGA-VQ-A8P2-01 1 72400983 72400983 T C NEGR1 Missense_Mutation p.E63G 0.49 tolerated(0.15) benign(0.042) TCGA-VQ-A8P2-01 1 74670408 74670408 G A FPGT Missense_Mutation p.R226H 0.43 tolerated(0.22) benign(0.059) TCGA-VQ-A8P2-01 1 74801701 74801701 C T FPGT-TNNI3K Missense_Mutation p.R298C 0.52 deleterious(0) possibly_damaging(0.631) TCGA-VQ-A8P2-01 1 75037868 75037868 C A C1orf173 Nonsense_Mutation p.E1176* 0.44 TCGA-VQ-A8P2-01 1 75139185 75139185 C T C1orf173 Missense_Mutation p.A7T 0.44 tolerated(0.12) benign(0.011) TCGA-VQ-A8P2-01 1 75172078 75172078 C T CRYZ Missense_Mutation p.V298M 0.08 deleterious(0.01) benign(0.302) TCGA-VQ-A8P2-01 1 75626575 75626575 A G LHX8 Missense_Mutation p.T356A 0.37 deleterious_low_confidence(0.01) benign(0.002) TCGA-VQ-A8P2-01 1 76205744 76205744 A G ACADM Missense_Mutation p.Y187C 0.50 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 1 76342685 76342685 G T MSH4 Missense_Mutation p.R457M 0.41 deleterious(0) possibly_damaging(0.742) TCGA-VQ-A8P2-01 1 76345808 76345808 C T MSH4 Missense_Mutation p.S584F 0.43 deleterious(0) probably_damaging(0.981) TCGA-VQ-A8P2-01 1 7723846 7723846 C A CAMTA1 Silent p.S413S 0.33 TCGA-VQ-A8P2-01 1 7724691 7724691 C T CAMTA1 Missense_Mutation p.S695L 0.30 deleterious_low_confidence(0.02) benign(0.23) TCGA-VQ-A8P2-01 1 7724817 7724817 C T CAMTA1 Missense_Mutation p.P737L 0.36 tolerated_low_confidence(0.07) benign(0.124) TCGA-VQ-A8P2-01 1 77510159 77510159 C T ST6GALNAC5 Missense_Mutation p.R178W 0.36 probably_damaging(1) TCGA-VQ-A8P2-01 1 77752751 77752751 G A AK5 Silent p.Q62Q 0.22 TCGA-VQ-A8P2-01 1 77984408 77984408 C T AK5 Missense_Mutation p.P436L 0.09 deleterious(0.02) possibly_damaging(0.856) TCGA-VQ-A8P2-01 1 78163592 78163592 G A USP33 Missense_Mutation p.T876I 0.43 deleterious(0.03) possibly_damaging(0.511) TCGA-VQ-A8P2-01 1 78267037 78267037 A - FAM73A Frame_Shift_Del p.K74Sfs*5 0.28 TCGA-VQ-A8P2-01 1 7839750 7839750 G T VAMP3 3'UTR 0.14 TCGA-VQ-A8P2-01 1 78428511 78428511 G A FUBP1 Missense_Mutation p.R430C 0.40 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 1 78478799 78478799 C T DNAJB4 Silent p.G92G 0.12 TCGA-VQ-A8P2-01 1 7887332 7887332 C T PER3 Silent p.S773S 0.42 TCGA-VQ-A8P2-01 1 7887824 7887824 C A PER3 Silent p.P937P 0.41 TCGA-VQ-A8P2-01 1 78958904 78958904 T C PTGFR Missense_Mutation p.V159A 0.34 tolerated(0.1) benign(0.012) TCGA-VQ-A8P2-01 1 78959085 78959085 C T PTGFR Silent p.C219C 0.25 TCGA-VQ-A8P2-01 1 79107131 79107131 C A IFI44L Silent p.V387V 0.41 TCGA-VQ-A8P2-01 1 79357352 79357352 G A ELTD1 Missense_Mutation p.L623F 0.38 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 1 82409108 82409108 A C LPHN2 Missense_Mutation p.M285L 0.36 deleterious(0) benign(0.13) TCGA-VQ-A8P2-01 1 82433873 82433873 G A LPHN2 Missense_Mutation p.R821K 0.30 tolerated(0.65) probably_damaging(0.995) TCGA-VQ-A8P2-01 1 8384498 8384498 C T SLC45A1 Nonsense_Mutation p.R37* 0.30 TCGA-VQ-A8P2-01 1 84399300 84399300 C T TTLL7 Nonsense_Mutation p.W346* 0.43 TCGA-VQ-A8P2-01 1 84961948 84961948 G A RPF1 Silent p.K301K 0.09 TCGA-VQ-A8P2-01 1 85130227 85130227 T - SSX2IP Frame_Shift_Del p.K182Nfs*17 0.27 TCGA-VQ-A8P2-01 1 85648801 85648801 T - SYDE2 Frame_Shift_Del p.G509Afs*12 0.30 TCGA-VQ-A8P2-01 1 85787216 85787216 G A DDAH1 Silent p.P259P 0.39 TCGA-VQ-A8P2-01 1 85824450 85824450 G A DDAH1 Silent p.G128G 0.32 TCGA-VQ-A8P2-01 1 86283753 86283753 T - COL24A1 Frame_Shift_Del p.G1270Efs*68 0.32 TCGA-VQ-A8P2-01 1 86315037 86315037 T - COL24A1 Frame_Shift_Del p.K1118Rfs*7 0.29 TCGA-VQ-A8P2-01 1 86921062 86921062 T C CLCA2 Missense_Mutation p.V895A 0.36 tolerated(0.28) benign(0.002) TCGA-VQ-A8P2-01 1 87029432 87029432 A - CLCA4 Frame_Shift_Del p.I182Sfs*56 0.35 TCGA-VQ-A8P2-01 1 87029441 87029441 C T CLCA4 Silent p.I182I 0.33 TCGA-VQ-A8P2-01 1 87033206 87033206 A G CLCA4 Missense_Mutation p.T352A 0.55 tolerated(0.87) benign(0.006) TCGA-VQ-A8P2-01 1 87329206 87329206 T C SEP15 Missense_Mutation p.N147S 0.44 deleterious(0.01) possibly_damaging(0.719) TCGA-VQ-A8P2-01 1 889246 889246 C T NOC2L Silent p.T268T 0.12 TCGA-VQ-A8P2-01 1 89475104 89475104 A T GBP3 Missense_Mutation p.I479N 0.36 deleterious(0.05) benign(0) TCGA-VQ-A8P2-01 1 89615229 89615229 G T GBP7 Missense_Mutation p.L300M 0.09 deleterious(0.03) benign(0.139) TCGA-VQ-A8P2-01 1 89661004 89661004 G A GBP4 Silent p.T113T 0.23 TCGA-VQ-A8P2-01 1 89726432 89726432 G A GBP5 Silent p.H572H 0.38 TCGA-VQ-A8P2-01 1 89729499 89729499 G A GBP5 Missense_Mutation p.P428S 0.39 tolerated(0.05) benign(0.395) TCGA-VQ-A8P2-01 1 89732235 89732235 C T GBP5 Missense_Mutation p.R221H 0.36 deleterious(0.01) probably_damaging(0.919) TCGA-VQ-A8P2-01 1 90048531 90048531 G A LRRC8B Missense_Mutation p.V108I 0.38 tolerated(0.33) probably_damaging(0.989) TCGA-VQ-A8P2-01 1 90050004 90050004 C T LRRC8B Missense_Mutation p.R599C 0.44 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 1 90179053 90179053 C T LRRC8C Silent p.C308C 0.38 TCGA-VQ-A8P2-01 1 90399499 90399499 T C LRRC8D Missense_Mutation p.V291A 0.48 deleterious(0) probably_damaging(0.917) TCGA-VQ-A8P2-01 1 91180282 91180282 C T BARHL2 Silent p.T219T 0.09 TCGA-VQ-A8P2-01 1 91382293 91382293 A - ZNF644 3'UTR 0.41 TCGA-VQ-A8P2-01 1 91845738 91845739 - T HFM1 Frame_Shift_Ins p.T310Nfs*5 0.34 TCGA-VQ-A8P2-01 1 91851337 91851337 T G HFM1 Missense_Mutation p.E183D 0.09 tolerated_low_confidence(0.45) benign(0.001) TCGA-VQ-A8P2-01 1 92163649 92163649 G T TGFBR3 Missense_Mutation p.P776T 0.09 deleterious(0.03) benign(0.02) TCGA-VQ-A8P2-01 1 92459736 92459736 G T BRDT Missense_Mutation p.A738S 0.45 tolerated(0.52) benign(0.035) TCGA-VQ-A8P2-01 1 92707799 92707799 C T C1orf146 Nonsense_Mutation p.R33* 0.33 TCGA-VQ-A8P2-01 1 9305264 9305264 G A H6PD Missense_Mutation p.A91T 0.41 tolerated(0.41) benign(0.008) TCGA-VQ-A8P2-01 1 93659212 93659212 A G CCDC18 Silent p.V257V 0.36 TCGA-VQ-A8P2-01 1 93672708 93672708 T C CCDC18 Missense_Mutation p.I375T 0.45 tolerated(1) benign(0.001) TCGA-VQ-A8P2-01 1 93687166 93687166 C A CCDC18 Missense_Mutation p.L708I 0.39 deleterious(0.01) possibly_damaging(0.72) TCGA-VQ-A8P2-01 1 93711716 93711716 G A CCDC18 Silent p.Q1065Q 0.17 TCGA-VQ-A8P2-01 1 94027805 94027805 T C BCAR3 Missense_Mutation p.E824G 0.47 deleterious(0.02) benign(0.002) TCGA-VQ-A8P2-01 1 94057814 94057814 C A BCAR3 Intron 0.31 TCGA-VQ-A8P2-01 1 94057983 94057983 G A BCAR3 Intron 0.27 TCGA-VQ-A8P2-01 1 94474377 94474377 G T ABCA4 Missense_Mutation p.A1922D 0.38 deleterious(0) probably_damaging(0.984) TCGA-VQ-A8P2-01 1 94495102 94495102 T C ABCA4 Missense_Mutation p.T1480A 0.63 deleterious(0) benign(0.206) TCGA-VQ-A8P2-01 1 94505630 94505630 G A ABCA4 Silent p.V1192V 0.47 TCGA-VQ-A8P2-01 1 94639388 94639389 - ACA ARHGAP29 3'UTR 0.35 TCGA-VQ-A8P2-01 1 94668239 94668239 C T ARHGAP29 Missense_Mutation p.R335H 0.29 deleterious(0.02) benign(0.058) TCGA-VQ-A8P2-01 1 95538397 95538397 G T ALG14 Missense_Mutation p.L20M 0.18 tolerated(0.14) benign(0.036) TCGA-VQ-A8P2-01 1 95657152 95657152 G A TMEM56 Missense_Mutation p.V174I 0.11 tolerated(0.46) benign(0.053) TCGA-VQ-A8P2-01 1 95710252 95710252 A G RWDD3 Missense_Mutation p.K191E 0.10 deleterious(0) possibly_damaging(0.507) TCGA-VQ-A8P2-01 1 9656019 9656019 G A TMEM201 Missense_Mutation p.R62H 0.37 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8P2-01 1 9778766 9778766 C A PIK3CD Silent p.A345A 0.12 TCGA-VQ-A8P2-01 1 9781259 9781259 C T PIK3CD Silent p.P588P 0.34 TCGA-VQ-A8P2-01 1 9781865 9781865 C A PIK3CD Missense_Mutation p.L668M 0.33 tolerated(0.18) benign(0.026) TCGA-VQ-A8P2-01 1 9793566 9793566 G T CLSTN1 Missense_Mutation p.L774M 0.18 tolerated(0.08) possibly_damaging(0.775) TCGA-VQ-A8P2-01 1 99380375 99380375 T C LPPR5 Silent p.V300V 0.39 TCGA-VQ-A8P2-01 1 99771572 99771572 C T LPPR4 Missense_Mutation p.A433V 0.52 tolerated(0.5) benign(0.348) TCGA-VQ-A8P2-01 20 10030169 10030169 G A ANKEF1 Missense_Mutation p.A318T 0.29 tolerated(0.1) benign(0.146) TCGA-VQ-A8P2-01 20 10626645 10626645 C T JAG1 Missense_Mutation p.G658D 0.32 deleterious(0.02) probably_damaging(1) TCGA-VQ-A8P2-01 20 10639128 10639128 C T JAG1 Missense_Mutation p.E228K 0.51 deleterious(0.02) benign(0.253) TCGA-VQ-A8P2-01 20 11899733 11899733 G T BTBD3 Splice_Site p.X109_splice 0.20 TCGA-VQ-A8P2-01 20 126105 126105 G T DEFB126 Missense_Mutation p.K36N 0.12 tolerated(0.1) possibly_damaging(0.451) TCGA-VQ-A8P2-01 20 1277015 1277015 C T SNPH 5'UTR 0.58 TCGA-VQ-A8P2-01 20 1277837 1277837 G A SNPH Silent p.S33S 0.25 TCGA-VQ-A8P2-01 20 1286040 1286040 C T SNPH Missense_Mutation p.S276L 0.50 tolerated(0.26) probably_damaging(0.915) TCGA-VQ-A8P2-01 20 13797121 13797121 G A NDUFAF5 Missense_Mutation p.S264N 0.21 tolerated(0.45) benign(0.147) TCGA-VQ-A8P2-01 20 13867089 13867089 C A SEL1L2 Splice_Site p.X249_splice 0.09 TCGA-VQ-A8P2-01 20 14307683 14307683 C T FLRT3 Missense_Mutation p.R157Q 0.35 deleterious(0.01) probably_damaging(0.976) TCGA-VQ-A8P2-01 20 15866410 15866410 C T MACROD2 Silent p.D243D 0.08 TCGA-VQ-A8P2-01 20 16488668 16488668 C T KIF16B Missense_Mutation p.A212T 0.47 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 20 16493522 16493522 C T KIF16B Missense_Mutation p.R132Q 0.41 tolerated(0.08) benign(0.013) TCGA-VQ-A8P2-01 20 16729120 16729120 G A OTOR Missense_Mutation p.R25H 0.36 deleterious(0) benign(0.444) TCGA-VQ-A8P2-01 20 17716310 17716310 G A BANF2 Missense_Mutation p.A50T 0.37 deleterious(0.01) probably_damaging(0.998) TCGA-VQ-A8P2-01 20 17950616 17950617 - A MGME1 Frame_Shift_Ins p.V41Sfs*5 0.29 TCGA-VQ-A8P2-01 20 18005341 18005341 C T OVOL2 Missense_Mutation p.G256D 0.42 tolerated(0.08) benign(0.021) TCGA-VQ-A8P2-01 20 18143319 18143319 G T CSRP2BP Missense_Mutation p.E467D 0.37 deleterious(0.03) benign(0.177) TCGA-VQ-A8P2-01 20 18295925 18295925 G T ZNF133 Nonsense_Mutation p.E143* 0.09 TCGA-VQ-A8P2-01 20 18414390 18414390 C T DZANK1 Missense_Mutation p.C256Y 0.36 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 20 1903086 1903086 C A SIRPA Silent p.S294S 0.39 TCGA-VQ-A8P2-01 20 19945628 19945628 G A RIN2 Missense_Mutation p.A215T 0.42 tolerated(0.16) possibly_damaging(0.871) TCGA-VQ-A8P2-01 20 19981285 19981285 T G RIN2 Missense_Mutation p.V847G 0.37 deleterious(0.04) possibly_damaging(0.69) TCGA-VQ-A8P2-01 20 20348950 20348950 C A INSM1 Silent p.S13S 0.40 TCGA-VQ-A8P2-01 20 20349005 20349005 C T INSM1 Missense_Mutation p.L32F 0.53 tolerated(0.54) possibly_damaging(0.608) TCGA-VQ-A8P2-01 20 20493886 20493886 C T RALGAPA2 Missense_Mutation p.R1376Q 0.50 deleterious(0) possibly_damaging(0.611) TCGA-VQ-A8P2-01 20 20610035 20610035 A G RALGAPA2 Missense_Mutation p.V402A 0.45 deleterious(0) benign(0.362) TCGA-VQ-A8P2-01 20 21142888 21142888 G A RP4-777D9.2 Intron 0.14 TCGA-VQ-A8P2-01 20 21338389 21338389 T C XRN2 Silent p.P738P 0.15 TCGA-VQ-A8P2-01 20 21377996 21377996 G A NKX2-4 Silent p.S14S 0.29 TCGA-VQ-A8P2-01 20 21687445 21687445 G A PAX1 Missense_Mutation p.R219H 0.42 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 20 2290351 2290351 C T TGM3 Missense_Mutation p.A19V 0.44 deleterious(0.05) benign(0.047) TCGA-VQ-A8P2-01 20 2297741 2297741 C T TGM3 Missense_Mutation p.L233F 0.13 deleterious(0) possibly_damaging(0.783) TCGA-VQ-A8P2-01 20 23016341 23016341 G A SSTR4 Missense_Mutation p.R74H 0.11 tolerated(0.1) probably_damaging(0.993) TCGA-VQ-A8P2-01 20 23016534 23016534 C T SSTR4 Silent p.T138T 0.43 TCGA-VQ-A8P2-01 20 2321152 2321152 G A TGM3 Silent p.K669K 0.41 TCGA-VQ-A8P2-01 20 23334769 23334769 C T NXT1 Missense_Mutation p.R31W 0.34 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8P2-01 20 23345573 23345574 - GA GZF1 Frame_Shift_Ins p.A188Efs*19 0.30 TCGA-VQ-A8P2-01 20 23614542 23614542 G A CST3 Intron 0.24 TCGA-VQ-A8P2-01 20 2377177 2377177 G T TGM6 Missense_Mutation p.E150D 0.38 deleterious(0.02) probably_damaging(0.916) TCGA-VQ-A8P2-01 20 23967239 23967239 C T GGTLC1 Missense_Mutation p.E4K 0.50 tolerated(0.36) benign(0.053) TCGA-VQ-A8P2-01 20 24930028 24930028 A G CST7 5'UTR 0.41 TCGA-VQ-A8P2-01 20 24944547 24944547 C T APMAP Missense_Mutation p.A385T 0.33 tolerated(0.34) benign(0.004) TCGA-VQ-A8P2-01 20 25287523 25287523 C T ABHD12 Nonsense_Mutation p.W299* 0.35 TCGA-VQ-A8P2-01 20 25498444 25498444 C T NINL Silent p.L74L 0.38 TCGA-VQ-A8P2-01 20 25656357 25656357 G A ZNF337 Nonsense_Mutation p.R523* 0.34 TCGA-VQ-A8P2-01 20 25656874 25656874 G A ZNF337 Silent p.C350C 0.44 TCGA-VQ-A8P2-01 20 2582903 2582903 C T TMC2 Nonsense_Mutation p.Q457* 0.13 TCGA-VQ-A8P2-01 20 2634855 2634855 G A NOP56 Intron 0.29 TCGA-VQ-A8P2-01 20 2637435 2637435 T C NOP56 Missense_Mutation p.V392A 0.23 tolerated(0.28) benign(0.159) TCGA-VQ-A8P2-01 20 2640691 2640691 G A IDH3B Silent p.Y300Y 0.12 TCGA-VQ-A8P2-01 20 2641140 2641140 G T IDH3B Silent p.R210R 0.39 TCGA-VQ-A8P2-01 20 264695 264695 A G C20orf96 Missense_Mutation p.V72A 0.27 tolerated(0.71) benign(0.023) TCGA-VQ-A8P2-01 20 2775281 2775281 C T CPXM1 Missense_Mutation p.R622H 0.40 tolerated(1) benign(0.002) TCGA-VQ-A8P2-01 20 2846855 2846855 A G VPS16 Intron 0.57 TCGA-VQ-A8P2-01 20 2969049 2969049 G A PTPRA Missense_Mutation p.V223M 0.52 deleterious(0) possibly_damaging(0.872) TCGA-VQ-A8P2-01 20 3016504 3016504 C T PTPRA Silent p.D705D 0.09 TCGA-VQ-A8P2-01 20 30231305 30231305 G A COX4I2 Missense_Mutation p.A116T 0.12 tolerated(1) benign(0.003) TCGA-VQ-A8P2-01 20 30309523 30309523 C T BCL2L1 Missense_Mutation p.A167T 0.10 tolerated(0.14) benign(0.027) TCGA-VQ-A8P2-01 20 30414670 30414670 G T MYLK2 Missense_Mutation p.V385L 0.38 tolerated(0.86) benign(0.084) TCGA-VQ-A8P2-01 20 30436315 30436315 G A FOXS1 5'Flank 0.25 TCGA-VQ-A8P2-01 20 30450409 30450409 G A DUSP15 Nonsense_Mutation p.Q134* 0.42 TCGA-VQ-A8P2-01 20 30674578 30674578 C T HCK Missense_Mutation p.P328L 0.11 deleterious(0) probably_damaging(0.983) TCGA-VQ-A8P2-01 20 30784582 30784582 C T PLAGL2 Silent p.A388A 0.59 TCGA-VQ-A8P2-01 20 3102094 3102094 C A UBOX5 Missense_Mutation p.E397D 0.11 tolerated(0.14) benign(0.049) TCGA-VQ-A8P2-01 20 31041162 31041162 C T C20orf112 Missense_Mutation p.R237H 0.41 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 20 3128246 3128246 C T FASTKD5 Missense_Mutation p.D491N 0.46 tolerated(0.31) benign(0.023) TCGA-VQ-A8P2-01 20 3128330 3128330 G A FASTKD5 Missense_Mutation p.P463S 0.44 tolerated(0.41) benign(0.018) TCGA-VQ-A8P2-01 20 3129641 3129641 G A FASTKD5 Nonsense_Mutation p.R26* 0.25 TCGA-VQ-A8P2-01 20 31367906 31367906 G A DNMT3B Intron 0.29 TCGA-VQ-A8P2-01 20 31380513 31380513 T C DNMT3B Missense_Mutation p.W335R 0.46 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 20 31386362 31386362 G A DNMT3B Silent p.P529P 0.45 TCGA-VQ-A8P2-01 20 31389222 31389222 G A DNMT3B Missense_Mutation p.R712Q 0.30 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 20 31571746 31571746 C T SUN5 Missense_Mutation p.A332T 0.38 tolerated(0.07) benign(0.018) TCGA-VQ-A8P2-01 20 31619457 31619457 C A BPIFB6 Missense_Mutation p.L2M 0.35 deleterious_low_confidence(0.03) unknown(0) TCGA-VQ-A8P2-01 20 3183884 3183884 C A DDRGK1 Missense_Mutation p.E90D 0.39 tolerated(0.32) probably_damaging(0.956) TCGA-VQ-A8P2-01 20 31979974 31979974 C T CDK5RAP1 Missense_Mutation p.R173Q 0.40 tolerated(0.41) benign(0.005) TCGA-VQ-A8P2-01 20 3209501 3209501 G A SLC4A11 Silent p.N768N 0.48 TCGA-VQ-A8P2-01 20 32693225 32693225 G A EIF2S2 Missense_Mutation p.P48S 0.25 tolerated(0.21) benign(0.01) TCGA-VQ-A8P2-01 20 32868966 32868966 A G AHCY Silent p.D391D 0.41 TCGA-VQ-A8P2-01 20 32880297 32880297 G A AHCY Silent p.G104G 0.42 TCGA-VQ-A8P2-01 20 33065640 33065640 G A ITCH Missense_Mutation p.G586S 0.28 deleterious(0) probably_damaging(0.971) TCGA-VQ-A8P2-01 20 33330564 33330564 G A NCOA6 Missense_Mutation p.P1166S 0.15 benign(0.28) TCGA-VQ-A8P2-01 20 33576027 33576027 G A MYH7B Missense_Mutation p.G559S 0.33 probably_damaging(1) TCGA-VQ-A8P2-01 20 33874508 33874508 C T FAM83C Missense_Mutation p.A692T 0.31 tolerated_low_confidence(0.54) benign(0.008) TCGA-VQ-A8P2-01 20 33874635 33874635 A G FAM83C Silent p.P649P 0.27 TCGA-VQ-A8P2-01 20 34025411 34025412 - G GDF5 Frame_Shift_Ins p.R100Qfs*6 0.30 TCGA-VQ-A8P2-01 20 34090680 34090680 G A CEP250 Missense_Mutation p.A1495T 0.38 probably_damaging(0.999) TCGA-VQ-A8P2-01 20 34091280 34091280 C T CEP250 Nonsense_Mutation p.R1695* 0.45 TCGA-VQ-A8P2-01 20 34130104 34130104 C A ERGIC3 Missense_Mutation p.L41M 0.38 deleterious(0) probably_damaging(0.99) TCGA-VQ-A8P2-01 20 34241478 34241478 C A RBM12 Missense_Mutation p.L589F 0.43 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8P2-01 20 34288781 34288781 G A ROMO1 Missense_Mutation p.G65S 0.30 tolerated(0.16) benign(0.035) TCGA-VQ-A8P2-01 20 35060740 35060740 C T DLGAP4 Missense_Mutation p.S207F 0.43 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 20 35207335 35207335 G T TGIF2 Missense_Mutation p.S53I 0.43 tolerated(0.33) probably_damaging(0.993) TCGA-VQ-A8P2-01 20 35381127 35381127 C T DSN1 3'UTR 0.36 TCGA-VQ-A8P2-01 20 35399447 35399448 - T DSN1 Frame_Shift_Ins p.G62Rfs*5 0.07 TCGA-VQ-A8P2-01 20 3556541 3556541 C T ATRN Silent p.C720C 0.52 TCGA-VQ-A8P2-01 20 35579998 35579998 C T SAMHD1 Missense_Mutation p.D17N 0.07 tolerated_low_confidence(0.05) benign(0.045) TCGA-VQ-A8P2-01 20 3559316 3559316 T C ATRN Missense_Mutation p.L814S 0.34 tolerated(0.06) probably_damaging(0.937) TCGA-VQ-A8P2-01 20 35627233 35627233 C T RBL1 Missense_Mutation p.V1046I 0.10 tolerated(0.82) benign(0.002) TCGA-VQ-A8P2-01 20 36031231 36031231 C A SRC Silent p.S450S 0.46 TCGA-VQ-A8P2-01 20 3672067 3672067 G A SIGLEC1 Missense_Mutation p.A1504V 0.36 deleterious(0.02) possibly_damaging(0.864) TCGA-VQ-A8P2-01 20 36888923 36888923 G A KIAA1755 5'UTR 0.27 TCGA-VQ-A8P2-01 20 36932569 36932569 C T BPI 5'UTR 0.27 TCGA-VQ-A8P2-01 20 36974915 36974915 C A LBP 5'UTR 0.47 TCGA-VQ-A8P2-01 20 37058407 37058407 C T SNORA71C RNA 0.26 TCGA-VQ-A8P2-01 20 371973 371973 G A TRIB3 Missense_Mutation p.A112T 0.35 tolerated(0.43) benign(0.026) TCGA-VQ-A8P2-01 20 3729893 3729893 C T HSPA12B Nonsense_Mutation p.R289* 0.55 TCGA-VQ-A8P2-01 20 3732585 3732585 C T HSPA12B Silent p.C611C 0.67 TCGA-VQ-A8P2-01 20 3734716 3734716 C T C20orf27 Missense_Mutation p.G197S 0.38 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 20 37380930 37380930 G A ACTR5 Silent p.E254E 0.27 TCGA-VQ-A8P2-01 20 3765445 3765445 G - CENPB Frame_Shift_Del p.I563Lfs*19 0.09 TCGA-VQ-A8P2-01 20 3781144 3781144 C T CDC25B Missense_Mutation p.P153L 0.32 deleterious(0) probably_damaging(0.975) TCGA-VQ-A8P2-01 20 3804793 3804793 G A AP5S1 Missense_Mutation p.R151Q 0.42 deleterious(0.03) possibly_damaging(0.576) TCGA-VQ-A8P2-01 20 39316679 39316679 G A MAFB Missense_Mutation p.T271M 0.39 deleterious(0.01) probably_damaging(0.998) TCGA-VQ-A8P2-01 20 39317373 39317373 C T MAFB Missense_Mutation p.E40K 0.48 deleterious(0.03) benign(0.025) TCGA-VQ-A8P2-01 20 39317441 39317441 G T MAFB Missense_Mutation p.A17D 0.26 deleterious(0) probably_damaging(0.981) TCGA-VQ-A8P2-01 20 39794860 39794860 G A PLCG1 Missense_Mutation p.R609H 0.32 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8P2-01 20 39795207 39795207 G T PLCG1 Nonsense_Mutation p.E698* 0.52 TCGA-VQ-A8P2-01 20 39798787 39798787 G A PLCG1 Missense_Mutation p.V896I 0.36 tolerated(0.18) possibly_damaging(0.742) TCGA-VQ-A8P2-01 20 39987094 39987094 C A LPIN3 Silent p.R775R 0.37 TCGA-VQ-A8P2-01 20 39990512 39990512 G A EMILIN3 Missense_Mutation p.A566V 0.36 tolerated(0.5) possibly_damaging(0.576) TCGA-VQ-A8P2-01 20 39991527 39991527 C T EMILIN3 Missense_Mutation p.V228I 0.42 tolerated(0.31) benign(0.008) TCGA-VQ-A8P2-01 20 40111988 40111988 C T CHD6 Missense_Mutation p.R810H 0.35 deleterious(0.02) benign(0.393) TCGA-VQ-A8P2-01 20 40790168 40790168 C T PTPRT Missense_Mutation p.G836R 0.29 tolerated(0.15) benign(0.177) TCGA-VQ-A8P2-01 20 42194871 42194871 C T SGK2 5'UTR 0.27 TCGA-VQ-A8P2-01 20 42328595 42328595 C A MYBL2 Missense_Mutation p.L288M 0.25 tolerated(0.12) possibly_damaging(0.836) TCGA-VQ-A8P2-01 20 42635212 42635212 A G TOX2 Missense_Mutation p.N64S 0.09 tolerated(0.27) probably_damaging(0.984) TCGA-VQ-A8P2-01 20 42815040 42815040 G A JPH2 Silent p.S102S 0.42 TCGA-VQ-A8P2-01 20 43378800 43378800 C A KCNK15 Missense_Mutation p.S105Y 0.30 tolerated(0.29) possibly_damaging(0.857) TCGA-VQ-A8P2-01 20 43964502 43964502 C T SDC4 Missense_Mutation p.G40E 0.57 deleterious(0.04) probably_damaging(1) TCGA-VQ-A8P2-01 20 43994316 43994316 G A SYS1 Missense_Mutation p.A74T 0.38 deleterious(0.01) possibly_damaging(0.87) TCGA-VQ-A8P2-01 20 43995703 43995703 G A SYS1 Missense_Mutation p.R140Q 0.35 deleterious(0.03) possibly_damaging(0.693) TCGA-VQ-A8P2-01 20 44313564 44313564 G A WFDC10B Silent p.L59L 0.14 TCGA-VQ-A8P2-01 20 44463619 44463619 G A SNX21 Missense_Mutation p.G104E 0.06 tolerated(0.43) benign(0.01) TCGA-VQ-A8P2-01 20 44469310 44469310 G A SNX21 Silent p.P160P 0.08 TCGA-VQ-A8P2-01 20 44515480 44515480 G A SPATA25 Silent p.S120S 0.16 TCGA-VQ-A8P2-01 20 44571763 44571763 A G PCIF1 Missense_Mutation p.N234S 0.38 tolerated(0.07) probably_damaging(0.996) TCGA-VQ-A8P2-01 20 44592442 44592442 C T ZNF335 Silent p.E430E 0.34 TCGA-VQ-A8P2-01 20 44592503 44592503 G T ZNF335 Missense_Mutation p.P410H 0.37 tolerated(0.23) benign(0.001) TCGA-VQ-A8P2-01 20 44639240 44639240 G A MMP9 Missense_Mutation p.A164T 0.11 deleterious(0) possibly_damaging(0.77) TCGA-VQ-A8P2-01 20 44640290 44640290 G A MMP9 Missense_Mutation p.A301T 0.17 tolerated(0.3) benign(0.002) TCGA-VQ-A8P2-01 20 44670056 44670056 A G SLC12A5 Missense_Mutation p.T338A 0.35 tolerated(0.11) benign(0.05) TCGA-VQ-A8P2-01 20 44815239 44815239 G T CDH22 Missense_Mutation p.L551I 0.33 tolerated(0.19) possibly_damaging(0.61) TCGA-VQ-A8P2-01 20 44841727 44841727 A C CDH22 Silent p.T313T 0.14 TCGA-VQ-A8P2-01 20 45131349 45131349 T C ZNF334 Missense_Mutation p.D210G 0.38 tolerated(0.06) benign(0.002) TCGA-VQ-A8P2-01 20 46295090 46295090 G A SULF2 Silent p.D573D 0.42 TCGA-VQ-A8P2-01 20 4680520 4680520 C T PRNP Silent p.Y218Y 0.33 TCGA-VQ-A8P2-01 20 4705455 4705455 C T PRND Silent p.P86P 0.33 TCGA-VQ-A8P2-01 20 47267458 47267458 C T PREX1 Missense_Mutation p.G931S 0.42 tolerated(0.85) benign(0) TCGA-VQ-A8P2-01 20 47567868 47567868 C T ARFGEF2 Silent p.I95I 0.48 TCGA-VQ-A8P2-01 20 47602090 47602090 C T ARFGEF2 Missense_Mutation p.A739V 0.32 deleterious(0) probably_damaging(0.919) TCGA-VQ-A8P2-01 20 47635531 47635531 C T ARFGEF2 Silent p.Y1540Y 0.52 TCGA-VQ-A8P2-01 20 47648660 47648660 T C ARFGEF2 Missense_Mutation p.L1713S 0.09 deleterious(0) probably_damaging(0.964) TCGA-VQ-A8P2-01 20 47731398 47731398 T C STAU1 3'UTR 0.38 TCGA-VQ-A8P2-01 20 47851605 47851605 G A DDX27 Silent p.T500T 0.32 TCGA-VQ-A8P2-01 20 47864592 47864592 T - ZNFX1 Frame_Shift_Del p.I1657* 0.23 TCGA-VQ-A8P2-01 20 48160978 48160978 G T PTGIS Missense_Mutation p.L129I 0.38 tolerated(0.19) benign(0.113) TCGA-VQ-A8P2-01 20 48481277 48481277 T C SLC9A8 Missense_Mutation p.V301A 0.29 tolerated(0.06) benign(0.009) TCGA-VQ-A8P2-01 20 48522561 48522561 G A SPATA2 Silent p.C386C 0.40 TCGA-VQ-A8P2-01 20 49493049 49493049 G A BCAS4 Missense_Mutation p.V205I 0.17 tolerated_low_confidence(0.43) benign(0.056) TCGA-VQ-A8P2-01 20 49576319 49576319 G T MOCS3 Missense_Mutation p.A314S 0.36 tolerated(0.6) benign(0.004) TCGA-VQ-A8P2-01 20 49626561 49626561 G A KCNG1 Silent p.C105C 0.45 TCGA-VQ-A8P2-01 20 50051821 50051821 G A NFATC2 Missense_Mutation p.R646W 0.35 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 20 5090015 5090015 C A TMEM230 Missense_Mutation p.R84M 0.32 deleterious(0.03) probably_damaging(0.935) TCGA-VQ-A8P2-01 20 5170380 5170380 G T CDS2 Splice_Site p.X368_splice 0.30 TCGA-VQ-A8P2-01 20 52193350 52193350 C T ZNF217 Silent p.P651P 0.44 TCGA-VQ-A8P2-01 20 52198418 52198418 C T ZNF217 Silent p.S316S 0.08 TCGA-VQ-A8P2-01 20 52645366 52645367 - A BCAS1 Frame_Shift_Ins p.M98Dfs*25 0.30 TCGA-VQ-A8P2-01 20 52674652 52674652 C T BCAS1 Silent p.S38S 0.45 TCGA-VQ-A8P2-01 20 52831959 52831959 G A PFDN4 Missense_Mutation p.E85K 0.35 tolerated(0.27) benign(0.047) TCGA-VQ-A8P2-01 20 54978688 54978688 C T CSTF1 Missense_Mutation p.R401C 0.40 deleterious(0) probably_damaging(0.947) TCGA-VQ-A8P2-01 20 55012387 55012387 C T CASS4 Silent p.L68L 0.23 TCGA-VQ-A8P2-01 20 55111508 55111508 T A FAM209B 3'UTR 0.44 TCGA-VQ-A8P2-01 20 55908302 55908302 A G SPO11 Missense_Mutation p.S102G 0.33 tolerated(0.08) benign(0.206) TCGA-VQ-A8P2-01 20 56099194 56099194 G A CTCFL Missense_Mutation p.P23L 0.13 tolerated(0.24) benign(0.006) TCGA-VQ-A8P2-01 20 56188238 56188238 C T ZBP1 Silent p.Q217Q 0.24 TCGA-VQ-A8P2-01 20 56227254 56227254 G A PMEPA1 Missense_Mutation p.P240L 0.45 deleterious_low_confidence(0.05) benign(0.048) TCGA-VQ-A8P2-01 20 56227274 56227274 G A PMEPA1 Silent p.S233S 0.42 TCGA-VQ-A8P2-01 20 57042668 57042668 A C APCDD1L Missense_Mutation p.F79V 0.26 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 20 57234688 57234688 G A STX16 Missense_Mutation p.E48K 0.17 tolerated(0.14) benign(0.001) TCGA-VQ-A8P2-01 20 57415572 57415572 C T RP4-806M20.3 5'Flank 0.44 TCGA-VQ-A8P2-01 20 57415752 57415752 G T RP4-806M20.3 5'Flank 0.58 TCGA-VQ-A8P2-01 20 57566425 57566425 G A NELFCD Missense_Mutation p.R356Q 0.44 tolerated(0.15) benign(0.004) TCGA-VQ-A8P2-01 20 57599544 57599544 C T TUBB1 Silent p.C354C 0.23 TCGA-VQ-A8P2-01 20 57766910 57766910 C A ZNF831 Missense_Mutation p.P279H 0.35 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 20 58349338 58349338 C T PHACTR3 Silent p.L323L 0.45 TCGA-VQ-A8P2-01 20 58514300 58514300 G A PPP1R3D Silent p.P229P 0.46 TCGA-VQ-A8P2-01 20 58514331 58514331 G A PPP1R3D Missense_Mutation p.A219V 0.29 tolerated(0.77) benign(0.009) TCGA-VQ-A8P2-01 20 58564125 58564126 - C CDH26 Frame_Shift_Ins p.Q399Pfs*7 0.30 TCGA-VQ-A8P2-01 20 58571570 58571570 G A CDH26 Intron 0.21 TCGA-VQ-A8P2-01 20 58645052 58645052 G A C20orf197 Missense_Mutation p.S8N 0.19 deleterious_low_confidence(0) benign(0.383) TCGA-VQ-A8P2-01 20 5904513 5904513 C T CHGB Missense_Mutation p.P575S 0.45 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8P2-01 20 5943988 5943988 G T MCM8 Missense_Mutation p.M286I 0.17 tolerated(0.48) benign(0.001) TCGA-VQ-A8P2-01 20 60503254 60503254 C T CDH4 Missense_Mutation p.P593L 0.30 deleterious(0.01) possibly_damaging(0.855) TCGA-VQ-A8P2-01 20 60551180 60551180 C T TAF4 3'UTR 0.36 TCGA-VQ-A8P2-01 20 60574158 60574158 C T TAF4 Missense_Mutation p.D932N 0.37 possibly_damaging(0.666) TCGA-VQ-A8P2-01 20 60737941 60737941 C T SS18L1 Silent p.I170I 0.38 TCGA-VQ-A8P2-01 20 60754336 60754336 C A SS18L1 3'UTR 0.15 TCGA-VQ-A8P2-01 20 60770974 60770974 C T MTG2 Silent p.D107D 0.35 TCGA-VQ-A8P2-01 20 60775762 60775762 C T MTG2 Nonsense_Mutation p.R284* 0.18 TCGA-VQ-A8P2-01 20 60791287 60791287 C T HRH3 Nonsense_Mutation p.W371* 0.21 TCGA-VQ-A8P2-01 20 60794870 60794870 C T HRH3 Missense_Mutation p.A53T 0.12 deleterious(0.01) probably_damaging(0.994) TCGA-VQ-A8P2-01 20 60854228 60854228 C T OSBPL2 Silent p.F169F 0.36 TCGA-VQ-A8P2-01 20 60859168 60859168 G A OSBPL2 Silent p.S313S 0.08 TCGA-VQ-A8P2-01 20 60864336 60864336 C T OSBPL2 Missense_Mutation p.T400M 0.38 deleterious(0) probably_damaging(0.994) TCGA-VQ-A8P2-01 20 60885270 60885270 C T LAMA5 Silent p.T3566T 0.26 TCGA-VQ-A8P2-01 20 60885875 60885875 C T LAMA5 Missense_Mutation p.R3431H 0.38 benign(0.183) TCGA-VQ-A8P2-01 20 60927071 60927071 C T LAMA5 Missense_Mutation p.R251H 0.23 possibly_damaging(0.88) TCGA-VQ-A8P2-01 20 60966361 60966361 G A CABLES2 Silent p.L414L 0.34 TCGA-VQ-A8P2-01 20 60966391 60966391 G A CABLES2 Missense_Mutation p.R404C 0.42 deleterious(0.03) possibly_damaging(0.908) TCGA-VQ-A8P2-01 20 61290118 61290118 C T SLCO4A1 Missense_Mutation p.R296W 0.33 deleterious(0.02) probably_damaging(0.953) TCGA-VQ-A8P2-01 20 61341007 61341007 G A NTSR1 Missense_Mutation p.A150T 0.14 tolerated(0.52) possibly_damaging(0.811) TCGA-VQ-A8P2-01 20 61386230 61386230 G A NTSR1 Missense_Mutation p.R303H 0.57 tolerated(0.15) benign(0.002) TCGA-VQ-A8P2-01 20 61430899 61430899 C T MRGBP Silent p.G173G 0.32 TCGA-VQ-A8P2-01 20 61510929 61510929 G A DIDO1 Missense_Mutation p.R2127W 0.46 possibly_damaging(0.893) TCGA-VQ-A8P2-01 20 61522426 61522426 G A DIDO1 Missense_Mutation p.R1143C 0.25 probably_damaging(1) TCGA-VQ-A8P2-01 20 61588222 61588222 C T SLC17A9 Silent p.F55F 0.14 TCGA-VQ-A8P2-01 20 61596969 61596969 G A SLC17A9 Missense_Mutation p.G318D 0.38 deleterious(0) probably_damaging(0.987) TCGA-VQ-A8P2-01 20 61908650 61908650 G A ARFGAP1 Missense_Mutation p.V146M 0.42 tolerated(0.06) benign(0.357) TCGA-VQ-A8P2-01 20 61939385 61939385 G A COL20A1 Missense_Mutation p.E240K 0.45 deleterious(0.01) possibly_damaging(0.811) TCGA-VQ-A8P2-01 20 61981063 61981063 G A CHRNA4 Missense_Mutation p.A567V 0.33 tolerated(0.19) benign(0.244) TCGA-VQ-A8P2-01 20 61991022 61991022 C T CHRNA4 Missense_Mutation p.A36T 0.40 tolerated(0.07) possibly_damaging(0.449) TCGA-VQ-A8P2-01 20 62195398 62195399 - G HELZ2 Frame_Shift_Ins p.D1593Rfs*175 0.35 TCGA-VQ-A8P2-01 20 62195617 62195617 C T HELZ2 Missense_Mutation p.A1520T 0.39 tolerated(0.43) benign(0.042) TCGA-VQ-A8P2-01 20 62198206 62198206 G A HELZ2 Silent p.H835H 0.37 TCGA-VQ-A8P2-01 20 62200722 62200722 C A HELZ2 Missense_Mutation p.E289D 0.46 tolerated(0.24) benign(0.218) TCGA-VQ-A8P2-01 20 62293252 62293252 G A RTEL1 Silent p.S117S 0.09 TCGA-VQ-A8P2-01 20 62378429 62378429 G A ZBTB46 Nonsense_Mutation p.R542* 0.17 TCGA-VQ-A8P2-01 20 62407204 62407204 C T ZBTB46 Missense_Mutation p.G350D 0.48 tolerated(0.07) possibly_damaging(0.461) TCGA-VQ-A8P2-01 20 62591199 62591199 C T ZNF512B 3'UTR 0.27 TCGA-VQ-A8P2-01 20 62669801 62669801 G T ZNF512B Intron 0.24 TCGA-VQ-A8P2-01 20 62848445 62848445 G A MYT1 Missense_Mutation p.E553K 0.08 possibly_damaging(0.714) TCGA-VQ-A8P2-01 20 62871149 62871149 G A MYT1 Missense_Mutation p.E1044K 0.43 benign(0.013) TCGA-VQ-A8P2-01 20 62904848 62904848 G A PCMTD2 Silent p.P327P 0.31 TCGA-VQ-A8P2-01 20 77202 77202 C T DEFB125 3'Flank 0.40 TCGA-VQ-A8P2-01 20 7920979 7920979 C A HAO1 Missense_Mutation p.A31S 0.40 deleterious(0.03) probably_damaging(0.98) TCGA-VQ-A8P2-01 20 8608943 8608943 C T PLCB1 Silent p.D83D 0.22 TCGA-VQ-A8P2-01 20 8717709 8717709 T C PLCB1 Missense_Mutation p.V693A 0.45 deleterious(0.03) benign(0.35) TCGA-VQ-A8P2-01 20 9360781 9360781 T A PLCB4 Nonsense_Mutation p.Y275* 0.39 TCGA-VQ-A8P2-01 20 9374291 9374291 A - PLCB4 Frame_Shift_Del p.N462Tfs*4 0.30 TCGA-VQ-A8P2-01 20 9438082 9438083 - A PLCB4 Frame_Shift_Ins p.E997Rfs*16 0.31 TCGA-VQ-A8P2-01 20 9523310 9523311 - G PAK7 Frame_Shift_Ins p.Y643Lfs*4 0.29 TCGA-VQ-A8P2-01 20 9561029 9561029 C T PAK7 Silent p.A251A 0.24 TCGA-VQ-A8P2-01 21 10862809 10862809 C T IGHV1OR21-1 Silent p.A35A 0.11 TCGA-VQ-A8P2-01 21 10934969 10934969 T C TPTE Missense_Mutation p.H275R 0.11 deleterious(0) probably_damaging(0.99) TCGA-VQ-A8P2-01 21 10951356 10951356 T C TPTE Missense_Mutation p.K119R 0.23 tolerated(0.28) benign(0.016) TCGA-VQ-A8P2-01 21 15746480 15746480 C T HSPA13 Missense_Mutation p.V292M 0.40 deleterious(0) possibly_damaging(0.859) TCGA-VQ-A8P2-01 21 16337269 16337269 C T NRIP1 Missense_Mutation p.R1082Q 0.13 tolerated_low_confidence(0.74) benign(0.01) TCGA-VQ-A8P2-01 21 17202880 17202880 G A USP25 Missense_Mutation p.R575Q 0.10 tolerated(0.84) possibly_damaging(0.486) TCGA-VQ-A8P2-01 21 17205668 17205668 G T USP25 Missense_Mutation p.E665D 0.25 tolerated(0.27) benign(0.092) TCGA-VQ-A8P2-01 21 17236657 17236657 G A USP25 Missense_Mutation p.R803H 0.13 deleterious(0) probably_damaging(0.984) TCGA-VQ-A8P2-01 21 22790890 22790890 G A NCAM2 Splice_Site p.X494_splice 0.38 TCGA-VQ-A8P2-01 21 22910239 22910239 C T NCAM2 Silent p.N825N 0.42 TCGA-VQ-A8P2-01 21 27284182 27284182 T C APP Missense_Mutation p.M594V 0.29 tolerated(0.38) benign(0.145) TCGA-VQ-A8P2-01 21 28216896 28216896 G A ADAMTS1 Silent p.S126S 0.30 TCGA-VQ-A8P2-01 21 28338541 28338541 G T ADAMTS5 Missense_Mutation p.P57H 0.41 deleterious_low_confidence(0) probably_damaging(1) TCGA-VQ-A8P2-01 21 30307435 30307435 A G LTN1 Missense_Mutation p.M1670T 0.43 deleterious(0) possibly_damaging(0.802) TCGA-VQ-A8P2-01 21 30353449 30353449 C T LTN1 Missense_Mutation p.V314I 0.33 tolerated(0.62) benign(0.003) TCGA-VQ-A8P2-01 21 30353596 30353596 C T LTN1 Missense_Mutation p.A265T 0.38 tolerated(0.08) probably_damaging(0.941) TCGA-VQ-A8P2-01 21 30426231 30426231 G A USP16 Missense_Mutation p.A768T 0.38 tolerated(0.53) possibly_damaging(0.542) TCGA-VQ-A8P2-01 21 30439212 30439212 C T CCT8 Missense_Mutation p.V188I 0.44 tolerated(0.96) benign(0.006) TCGA-VQ-A8P2-01 21 30442612 30442612 C T CCT8 Missense_Mutation p.C36Y 0.41 deleterious(0) probably_damaging(0.986) TCGA-VQ-A8P2-01 21 30699077 30699077 A G BACH1 Missense_Mutation p.H311R 0.31 tolerated(0.16) benign(0.001) TCGA-VQ-A8P2-01 21 31062137 31062137 G A GRIK1 Missense_Mutation p.P152L 0.39 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 21 31863968 31863968 T G KRTAP19-3 3'UTR 0.36 TCGA-VQ-A8P2-01 21 32185382 32185382 C T KRTAP8-1 Missense_Mutation p.G53S 0.11 tolerated_low_confidence(0.41) benign(0.128) TCGA-VQ-A8P2-01 21 32253626 32253626 C T KRTAP11-1 Missense_Mutation p.R73Q 0.65 tolerated(0.64) benign(0.005) TCGA-VQ-A8P2-01 21 32502565 32502565 C T TIAM1 Silent p.T1337T 0.14 TCGA-VQ-A8P2-01 21 32526578 32526578 C T TIAM1 Missense_Mutation p.R1053H 0.37 deleterious(0) probably_damaging(0.949) TCGA-VQ-A8P2-01 21 32589979 32589979 G A TIAM1 Missense_Mutation p.R678C 0.26 deleterious(0) probably_damaging(0.993) TCGA-VQ-A8P2-01 21 32624200 32624200 C T TIAM1 Silent p.S423S 0.41 TCGA-VQ-A8P2-01 21 33044355 33044355 G T SCAF4 Missense_Mutation p.P934H 0.18 unknown(0) TCGA-VQ-A8P2-01 21 33642820 33642820 C T MIS18A Missense_Mutation p.C141Y 0.32 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 21 33974237 33974237 G A C21orf59 Missense_Mutation p.A270V 0.28 deleterious(0) probably_damaging(0.99) TCGA-VQ-A8P2-01 21 34839398 34839398 G A TMEM50B Missense_Mutation p.A44V 0.37 tolerated(0.17) benign(0.262) TCGA-VQ-A8P2-01 21 34841182 34841182 A G TMEM50B Missense_Mutation p.F4S 0.28 deleterious(0.03) possibly_damaging(0.875) TCGA-VQ-A8P2-01 21 34925164 34925164 G A SON Silent p.S1209S 0.30 TCGA-VQ-A8P2-01 21 34955839 34955839 T C DONSON Missense_Mutation p.I307V 0.43 tolerated(0.1) benign(0.009) TCGA-VQ-A8P2-01 21 34958429 34958429 G T DONSON Missense_Mutation p.P154H 0.30 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 21 35468386 35468386 G A SLC5A3 Missense_Mutation p.G297S 0.46 deleterious(0) probably_damaging(0.987) TCGA-VQ-A8P2-01 21 37442656 37442656 C T CBR1 Silent p.Y81Y 0.39 TCGA-VQ-A8P2-01 21 37537108 37537108 G A DOPEY2 Missense_Mutation p.R26K 0.41 tolerated(0.89) benign(0.38) TCGA-VQ-A8P2-01 21 37741916 37741916 C T MORC3 Silent p.T750T 0.36 TCGA-VQ-A8P2-01 21 37785236 37785236 T C CHAF1B Silent p.F372F 0.10 TCGA-VQ-A8P2-01 21 38137471 38137471 G A HLCS Missense_Mutation p.R508W 0.22 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 21 38439629 38439629 G T PIGP Silent p.G93G 0.43 TCGA-VQ-A8P2-01 21 38463649 38463649 A G TTC3 Silent p.T179T 0.33 TCGA-VQ-A8P2-01 21 38494227 38494227 G T TTC3 Missense_Mutation p.K337N 0.27 deleterious(0.05) benign(0.078) TCGA-VQ-A8P2-01 21 38507803 38507804 - A TTC3 Frame_Shift_Ins p.I525Nfs*10 0.37 TCGA-VQ-A8P2-01 21 38536358 38536358 G A TTC3 Missense_Mutation p.R1059Q 0.33 tolerated(0.59) benign(0.005) TCGA-VQ-A8P2-01 21 39764332 39764332 C A ERG Missense_Mutation p.W267C 0.60 deleterious(0) possibly_damaging(0.886) TCGA-VQ-A8P2-01 21 40194678 40194678 C T ETS2 Silent p.Y425Y 0.47 TCGA-VQ-A8P2-01 21 40568214 40568214 C G BRWD1 Intron 0.06 TCGA-VQ-A8P2-01 21 41385013 41385013 C T DSCAM Missense_Mutation p.R1996Q 0.44 deleterious_low_confidence(0) benign(0.001) TCGA-VQ-A8P2-01 21 41416039 41416039 G A DSCAM Silent p.S1783S 0.46 TCGA-VQ-A8P2-01 21 41452118 41452118 G A DSCAM Missense_Mutation p.R1461C 0.38 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 21 42770829 42770829 G A MX2 Silent p.S385S 0.20 TCGA-VQ-A8P2-01 21 42852405 42852405 A G TMPRSS2 Silent p.Y227Y 0.22 TCGA-VQ-A8P2-01 21 43160998 43160998 C T RIPK4 Silent p.%3D 0.41 TCGA-VQ-A8P2-01 21 43258107 43258107 G A PRDM15 Missense_Mutation p.R679W 0.24 deleterious_low_confidence(0) probably_damaging(0.952) TCGA-VQ-A8P2-01 21 43309296 43309296 C A C2CD2 Missense_Mutation p.K676N 0.08 tolerated(0.06) probably_damaging(0.92) TCGA-VQ-A8P2-01 21 43547924 43547924 G A UMODL1 Missense_Mutation p.G1353R 0.43 tolerated(0.15) possibly_damaging(0.479) TCGA-VQ-A8P2-01 21 43938580 43938580 G A SLC37A1 Missense_Mutation p.A6T 0.12 tolerated(0.4) benign(0.002) TCGA-VQ-A8P2-01 21 44299642 44299642 C T WDR4 5'UTR 0.27 TCGA-VQ-A8P2-01 21 44488638 44488638 G A CBS Silent p.F99F 0.36 TCGA-VQ-A8P2-01 21 45152478 45152478 G T PDXK Intron 0.38 TCGA-VQ-A8P2-01 21 45194122 45194122 C T CSTB Silent p.Q86Q 0.33 TCGA-VQ-A8P2-01 21 45511870 45511870 T C TRAPPC10 Silent p.L979L 0.36 TCGA-VQ-A8P2-01 21 45676039 45676039 T C DNMT3L Splice_Site p.X173_splice 0.47 TCGA-VQ-A8P2-01 21 45679393 45679393 C T DNMT3L Missense_Mutation p.G91R 0.25 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 21 45736147 45736147 A G PFKL Silent p.R256R 0.59 TCGA-VQ-A8P2-01 21 45741610 45741610 A G PFKL Splice_Site p.X398_splice 0.34 TCGA-VQ-A8P2-01 21 45861583 45861583 C T TRPM2 Silent p.H1465H 0.35 TCGA-VQ-A8P2-01 21 45876939 45876939 G A LRRC3 Missense_Mutation p.A138T 0.38 deleterious(0) probably_damaging(0.992) TCGA-VQ-A8P2-01 21 45945695 45945695 G T TSPEAR Missense_Mutation p.P393T 0.43 tolerated(0.32) benign(0.216) TCGA-VQ-A8P2-01 21 45993647 45993647 C A KRTAP10-4 Nonsense_Mutation p.C4* 0.41 TCGA-VQ-A8P2-01 21 46057373 46057373 C T KRTAP10-10 Silent p.C13C 0.31 TCGA-VQ-A8P2-01 21 46066571 46066571 G A KRTAP10-11 Missense_Mutation p.A66T 0.44 tolerated(0.24) unknown(0) TCGA-VQ-A8P2-01 21 46313406 46313406 T G ITGB2 Missense_Mutation p.K379N 0.39 tolerated(0.13) possibly_damaging(0.635) TCGA-VQ-A8P2-01 21 46687580 46687580 G A POFUT2 Missense_Mutation p.P354L 0.34 deleterious(0.01) probably_damaging(0.969) TCGA-VQ-A8P2-01 21 46875501 46875501 G A COL18A1 Silent p.A19A 0.50 TCGA-VQ-A8P2-01 21 47321010 47321010 G A PCBP3 Missense_Mutation p.A108T 0.09 tolerated(0.4) benign(0.07) TCGA-VQ-A8P2-01 21 47423959 47423959 C A COL6A1 3'UTR 0.41 TCGA-VQ-A8P2-01 21 47535811 47535811 C T COL6A2 Missense_Mutation p.P276L 0.40 deleterious(0.05) possibly_damaging(0.82) TCGA-VQ-A8P2-01 21 47544810 47544810 C - COL6A2 Frame_Shift_Del p.P584Lfs*12 0.28 TCGA-VQ-A8P2-01 21 47545215 47545215 C T COL6A2 Silent p.C602C 0.33 TCGA-VQ-A8P2-01 21 47558822 47558822 G A FTCD Missense_Mutation p.P426S 0.28 deleterious(0.03) benign(0.131) TCGA-VQ-A8P2-01 21 47574240 47574240 C T FTCD Missense_Mutation p.D21N 0.30 tolerated(0.14) benign(0.033) TCGA-VQ-A8P2-01 21 47581589 47581589 C T SPATC1L Missense_Mutation p.D243N 0.30 deleterious(0.01) possibly_damaging(0.869) TCGA-VQ-A8P2-01 21 47616147 47616147 G A LSS Missense_Mutation p.R569W 0.46 deleterious(0.01) possibly_damaging(0.78) TCGA-VQ-A8P2-01 21 47625758 47625758 C T LSS Silent p.A554A 0.50 TCGA-VQ-A8P2-01 21 47663397 47663397 G - MCM3AP Frame_Shift_Del p.R1760Gfs*9 0.29 TCGA-VQ-A8P2-01 21 47805822 47805822 C T PCNT Missense_Mutation p.R1130W 0.43 possibly_damaging(0.876) TCGA-VQ-A8P2-01 21 47831259 47831259 C T PCNT Missense_Mutation p.P1758S 0.41 possibly_damaging(0.857) TCGA-VQ-A8P2-01 21 47831590 47831590 C T PCNT Missense_Mutation p.A1868V 0.33 benign(0) TCGA-VQ-A8P2-01 21 47865349 47865349 C T PCNT 3'UTR 0.50 TCGA-VQ-A8P2-01 21 47969809 47969809 C T DIP2A Intron 0.35 TCGA-VQ-A8P2-01 21 47974188 47974188 C T DIP2A Missense_Mutation p.A1046V 0.33 tolerated(0.14) benign(0.278) TCGA-VQ-A8P2-01 21 47978158 47978158 G A DIP2A Missense_Mutation p.C1274Y 0.38 tolerated(0.26) benign(0) TCGA-VQ-A8P2-01 22 16449589 16449589 A G OR11H1 Silent p.T72T 0.14 TCGA-VQ-A8P2-01 22 16449639 16449639 C T OR11H1 Missense_Mutation p.G56R 0.18 deleterious(0.01) probably_damaging(0.972) TCGA-VQ-A8P2-01 22 17071741 17071741 C T CCT8L2 3'UTR 0.44 TCGA-VQ-A8P2-01 22 17473061 17473061 C T GAB4 Nonsense_Mutation p.W60* 0.08 TCGA-VQ-A8P2-01 22 17589429 17589429 C A IL17RA Missense_Mutation p.N440K 0.14 deleterious(0.02) possibly_damaging(0.696) TCGA-VQ-A8P2-01 22 18300932 18300932 G - MICAL3 Frame_Shift_Del p.R1499Gfs*106 0.31 TCGA-VQ-A8P2-01 22 18301233 18301233 C T MICAL3 Silent p.P1398P 0.10 TCGA-VQ-A8P2-01 22 18362137 18362137 C G MICAL3 Intron 0.35 TCGA-VQ-A8P2-01 22 18368658 18368658 C T MICAL3 Missense_Mutation p.G743S 0.25 benign(0.003) TCGA-VQ-A8P2-01 22 18909893 18909893 C T PRODH Missense_Mutation p.A292T 0.22 tolerated(0.17) benign(0.031) TCGA-VQ-A8P2-01 22 18918575 18918575 C T PRODH Missense_Mutation p.G137D 0.53 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 22 19028716 19028716 G A DGCR2 Silent p.D417D 0.14 TCGA-VQ-A8P2-01 22 19029337 19029337 G A DGCR2 Missense_Mutation p.S381F 0.38 deleterious(0) probably_damaging(0.994) TCGA-VQ-A8P2-01 22 19048336 19048336 C T DGCR2 Intron 0.62 TCGA-VQ-A8P2-01 22 19119300 19119300 C T TSSK2 Silent p.L130L 0.33 TCGA-VQ-A8P2-01 22 19130106 19130106 T C DGCR14 Silent p.A115A 0.34 TCGA-VQ-A8P2-01 22 19137346 19137346 G A GSC2 Missense_Mutation p.P115S 0.39 tolerated(0.17) benign(0.014) TCGA-VQ-A8P2-01 22 19197849 19197849 G A CLTCL1 Missense_Mutation p.A1079V 0.42 tolerated(0.84) benign(0.012) TCGA-VQ-A8P2-01 22 19209531 19209531 G A CLTCL1 Missense_Mutation p.A835V 0.41 tolerated(0.31) benign(0.001) TCGA-VQ-A8P2-01 22 19221135 19221135 C T CLTCL1 Missense_Mutation p.R393H 0.16 deleterious(0.01) benign(0.427) TCGA-VQ-A8P2-01 22 19343310 19343310 T C HIRA Missense_Mutation p.Y845C 0.33 deleterious(0) probably_damaging(0.983) TCGA-VQ-A8P2-01 22 19511171 19511171 G A CLDN5 Missense_Mutation p.P288L 0.08 deleterious(0.01) benign(0.03) TCGA-VQ-A8P2-01 22 19766920 19766920 G A GNB1L 3'Flank 0.28 TCGA-VQ-A8P2-01 22 19776350 19776350 G T GNB1L Missense_Mutation p.A289D 0.31 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 22 19839386 19839386 C A C22orf29 Missense_Mutation p.Q133H 0.12 tolerated(0.1) possibly_damaging(0.642) TCGA-VQ-A8P2-01 22 19839610 19839610 G A C22orf29 Nonsense_Mutation p.R59* 0.15 TCGA-VQ-A8P2-01 22 20079116 20079116 C A DGCR8 Missense_Mutation p.L489I 0.37 deleterious(0.01) benign(0.338) TCGA-VQ-A8P2-01 22 20458096 20458096 C T RIMBP3 Nonsense_Mutation p.W1069* 0.08 TCGA-VQ-A8P2-01 22 20749678 20749678 G A ZNF74 Silent p.S30S 0.40 TCGA-VQ-A8P2-01 22 20760776 20760776 G A ZNF74 Missense_Mutation p.A485T 0.44 tolerated(0.18) benign(0.024) TCGA-VQ-A8P2-01 22 20761150 20761150 A G ZNF74 Silent p.G609G 0.08 TCGA-VQ-A8P2-01 22 21062227 21062227 G T PI4KA 3'UTR 0.36 TCGA-VQ-A8P2-01 22 21062322 21062322 G A PI4KA 3'UTR 0.34 TCGA-VQ-A8P2-01 22 21133741 21133742 - A SERPIND1 Frame_Shift_Ins p.N49Kfs*40 0.12 TCGA-VQ-A8P2-01 22 21288246 21288246 G A CRKL Missense_Mutation p.R164Q 0.13 tolerated(0.31) possibly_damaging(0.559) TCGA-VQ-A8P2-01 22 21304061 21304061 C T CRKL Silent p.N280N 0.34 TCGA-VQ-A8P2-01 22 21331341 21331341 G T AIFM3 Missense_Mutation p.K413N 0.36 tolerated(0.14) benign(0.118) TCGA-VQ-A8P2-01 22 21340156 21340156 G A LZTR1 Missense_Mutation p.R97Q 0.36 tolerated(0.1) probably_damaging(0.976) TCGA-VQ-A8P2-01 22 21348507 21348507 G A LZTR1 Missense_Mutation p.E522K 0.47 tolerated(0.16) benign(0.13) TCGA-VQ-A8P2-01 22 21363463 21363463 G A AC002472.1 5'Flank 0.14 TCGA-VQ-A8P2-01 22 21799453 21799453 C T HIC2 Missense_Mutation p.S90F 0.17 deleterious(0) possibly_damaging(0.788) TCGA-VQ-A8P2-01 22 22312930 22312930 G A TOP3B Missense_Mutation p.R681W 0.35 deleterious(0.03) benign(0.023) TCGA-VQ-A8P2-01 22 22324666 22324666 C T TOP3B Missense_Mutation p.C166Y 0.32 deleterious(0.02) benign(0.003) TCGA-VQ-A8P2-01 22 22517071 22517071 C T IGLV4-60 Missense_Mutation p.T120I 0.41 deleterious(0.01) benign(0.009) TCGA-VQ-A8P2-01 22 22681889 22681889 C T IGLV1-50 Missense_Mutation p.T24M 0.36 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-VQ-A8P2-01 22 22869867 22869867 G T ZNF280A Missense_Mutation p.P30T 0.15 deleterious(0.05) benign(0.008) TCGA-VQ-A8P2-01 22 23011091 23011091 C T IGLV3-27 Missense_Mutation p.R52W 0.51 deleterious(0.02) possibly_damaging(0.536) TCGA-VQ-A8P2-01 22 23237726 23237726 C A IGLL5 Missense_Mutation p.P166H 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.827) TCGA-VQ-A8P2-01 22 23438408 23438408 C T GNAZ Silent p.L176L 0.38 TCGA-VQ-A8P2-01 22 23465529 23465529 G A GNAZ Missense_Mutation p.A327T 0.45 deleterious(0) probably_damaging(0.981) TCGA-VQ-A8P2-01 22 23465577 23465577 G A GNAZ Missense_Mutation p.V343I 0.38 tolerated(1) possibly_damaging(0.823) TCGA-VQ-A8P2-01 22 23632538 23632538 C T BCR Missense_Mutation p.P907L 0.38 tolerated(0.28) probably_damaging(0.913) TCGA-VQ-A8P2-01 22 23657745 23657745 C T BCR 3'UTR 0.42 TCGA-VQ-A8P2-01 22 23974039 23974039 C A C22orf43 Missense_Mutation p.D58Y 0.26 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 22 24036077 24036077 C T RGL4 Silent p.C276C 0.08 TCGA-VQ-A8P2-01 22 24086241 24086241 G A ZNF70 Missense_Mutation p.P363S 0.34 deleterious(0.01) probably_damaging(0.996) TCGA-VQ-A8P2-01 22 24125681 24125681 G A MMP11 Missense_Mutation p.V473M 0.43 deleterious(0) possibly_damaging(0.853) TCGA-VQ-A8P2-01 22 24730391 24730391 C T SPECC1L Nonsense_Mutation p.R804* 0.32 TCGA-VQ-A8P2-01 22 24836596 24836596 C T ADORA2A Silent p.A126A 0.06 TCGA-VQ-A8P2-01 22 24898113 24898113 G A UPB1 Missense_Mutation p.R99H 0.38 tolerated(0.15) probably_damaging(0.934) TCGA-VQ-A8P2-01 22 25010753 25010753 C T GGT1 Missense_Mutation p.R59W 0.31 deleterious(0.02) benign(0.033) TCGA-VQ-A8P2-01 22 25120979 25120980 - T PIWIL3 Frame_Shift_Ins p.N711Kfs*26 0.27 TCGA-VQ-A8P2-01 22 26074788 26074788 C G ADRBK2 Missense_Mutation p.A218G 0.36 deleterious(0.03) possibly_damaging(0.854) TCGA-VQ-A8P2-01 22 26168459 26168459 G A MYO18B Silent p.S617S 0.43 TCGA-VQ-A8P2-01 22 26343779 26343779 G T MYO18B Missense_Mutation p.K1911N 0.15 deleterious(0) probably_damaging(0.978) TCGA-VQ-A8P2-01 22 26423244 26423244 G A MYO18B Missense_Mutation p.R2435H 0.09 deleterious(0.02) benign(0.057) TCGA-VQ-A8P2-01 22 26701982 26701982 C T SEZ6L Silent p.G462G 0.27 TCGA-VQ-A8P2-01 22 26747037 26747037 C T SEZ6L Silent p.P809P 0.34 TCGA-VQ-A8P2-01 22 26882013 26882013 C A SRRD Missense_Mutation p.F78L 0.34 deleterious(0) possibly_damaging(0.751) TCGA-VQ-A8P2-01 22 26888311 26888311 G A TFIP11 Missense_Mutation p.R728W 0.40 deleterious(0.02) probably_damaging(0.934) TCGA-VQ-A8P2-01 22 26890301 26890301 C T SRRD 3'UTR 0.24 TCGA-VQ-A8P2-01 22 26937308 26937308 C T TPST2 Missense_Mutation p.G97S 0.41 deleterious(0.05) probably_damaging(0.985) TCGA-VQ-A8P2-01 22 27008066 27008066 C T CRYBB1 Missense_Mutation p.R90H 0.40 deleterious(0.03) probably_damaging(0.983) TCGA-VQ-A8P2-01 22 28192859 28192859 C T MN1 Missense_Mutation p.A1225T 0.47 benign(0.012) TCGA-VQ-A8P2-01 22 29083856 29083856 A G CHEK2 3'UTR 0.31 TCGA-VQ-A8P2-01 22 29454714 29454714 C T C22orf31 3'UTR 0.11 TCGA-VQ-A8P2-01 22 29726404 29726404 G A AP1B1 Missense_Mutation p.A910V 0.41 tolerated(0.29) benign(0.016) TCGA-VQ-A8P2-01 22 29833742 29833742 G T RFPL1 5'Flank 0.44 TCGA-VQ-A8P2-01 22 29881809 29881809 C T NEFH Missense_Mutation p.A394V 0.54 deleterious(0) unknown(0) TCGA-VQ-A8P2-01 22 29907264 29907264 C T THOC5 Missense_Mutation p.V607M 0.37 deleterious(0) possibly_damaging(0.608) TCGA-VQ-A8P2-01 22 30184952 30184952 G A ASCC2 3'UTR 0.44 TCGA-VQ-A8P2-01 22 30221167 30221167 G T ASCC2 Missense_Mutation p.A107D 0.23 tolerated(0.69) benign(0.002) TCGA-VQ-A8P2-01 22 30228273 30228273 C A ASCC2 Missense_Mutation p.K14N 0.30 tolerated(0.11) benign(0.056) TCGA-VQ-A8P2-01 22 30416400 30416400 C T MTMR3 Missense_Mutation p.P918S 0.09 tolerated_low_confidence(0.1) benign(0.371) TCGA-VQ-A8P2-01 22 30862374 30862374 C T SEC14L3 Missense_Mutation p.G176D 0.22 tolerated(0.1) benign(0.297) TCGA-VQ-A8P2-01 22 30886121 30886121 C A SEC14L4 Missense_Mutation p.K398N 0.38 tolerated_low_confidence(0.42) benign(0.001) TCGA-VQ-A8P2-01 22 31032672 31032672 C T SLC35E4 Missense_Mutation p.P79S 0.38 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 22 31285528 31285528 C T OSBP2 Nonsense_Mutation p.R510* 0.34 TCGA-VQ-A8P2-01 22 31328554 31328554 C T MORC2 Missense_Mutation p.D847N 0.22 deleterious(0) probably_damaging(0.949) TCGA-VQ-A8P2-01 22 31487327 31487327 C A SMTN Missense_Mutation p.P440T 0.60 deleterious(0) probably_damaging(0.98) TCGA-VQ-A8P2-01 22 31531876 31531876 G A PLA2G3 Missense_Mutation p.R455W 0.40 tolerated(0.07) benign(0.01) TCGA-VQ-A8P2-01 22 31731681 31731681 G A PATZ1 Nonsense_Mutation p.R502* 0.19 TCGA-VQ-A8P2-01 22 32841860 32841860 G A BPIFC Silent p.S166S 0.50 TCGA-VQ-A8P2-01 22 32924965 32924965 C A SYN3 Nonsense_Mutation p.E376* 0.44 TCGA-VQ-A8P2-01 22 32929824 32929824 G A SYN3 Silent p.A350A 0.42 TCGA-VQ-A8P2-01 22 36013308 36013308 G A MB 5'UTR 0.41 TCGA-VQ-A8P2-01 22 36122610 36122610 C G APOL5 Silent p.G165G 0.41 TCGA-VQ-A8P2-01 22 36537450 36537450 C T APOL3 Missense_Mutation p.G336E 0.26 tolerated(0.11) possibly_damaging(0.896) TCGA-VQ-A8P2-01 22 36591357 36591357 C A APOL4 Missense_Mutation p.R73M 0.40 deleterious(0) probably_damaging(0.993) TCGA-VQ-A8P2-01 22 36689392 36689392 C T MYH9 Missense_Mutation p.A1360T 0.14 benign(0.001) TCGA-VQ-A8P2-01 22 36716344 36716344 G - MYH9 Frame_Shift_Del p.Q313Sfs*14 0.30 TCGA-VQ-A8P2-01 22 36886288 36886288 G A FOXRED2 Missense_Mutation p.R608C 0.30 deleterious(0.05) possibly_damaging(0.586) TCGA-VQ-A8P2-01 22 36919957 36919957 G A EIF3D Missense_Mutation p.A126V 0.09 tolerated(0.19) benign(0.008) TCGA-VQ-A8P2-01 22 37159026 37159026 G A IFT27 Silent p.A128A 0.32 TCGA-VQ-A8P2-01 22 37211274 37211274 C T PVALB Missense_Mutation p.D23N 0.44 tolerated(0.07) possibly_damaging(0.619) TCGA-VQ-A8P2-01 22 37491983 37491983 G A TMPRSS6 Silent p.A193A 0.41 TCGA-VQ-A8P2-01 22 37602724 37602724 C T SSTR3 Silent p.R373R 0.42 TCGA-VQ-A8P2-01 22 37602727 37602727 G A SSTR3 Silent p.G372G 0.45 TCGA-VQ-A8P2-01 22 37602870 37602870 G A SSTR3 Missense_Mutation p.R325C 0.25 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 22 38120784 38120784 C T TRIOBP Nonsense_Mutation p.R741* 0.46 TCGA-VQ-A8P2-01 22 38121375 38121375 G A TRIOBP Missense_Mutation p.A938T 0.41 deleterious_low_confidence(0.02) benign(0.038) TCGA-VQ-A8P2-01 22 38130886 38130886 C T TRIOBP Missense_Mutation p.P1515S 0.10 deleterious_low_confidence(0.02) benign(0.013) TCGA-VQ-A8P2-01 22 38470950 38470950 G A PICK1 Silent p.R353R 0.54 TCGA-VQ-A8P2-01 22 38482286 38482286 C T BAIAP2L2 Missense_Mutation p.S477N 0.34 tolerated(0.09) benign(0.012) TCGA-VQ-A8P2-01 22 38482293 38482293 G A BAIAP2L2 Missense_Mutation p.R475C 0.42 tolerated(0.14) benign(0.009) TCGA-VQ-A8P2-01 22 38565298 38565298 G T PLA2G6 Missense_Mutation p.L46M 0.50 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 22 38627344 38627344 C T TMEM184B Intron 0.44 TCGA-VQ-A8P2-01 22 38776399 38776399 G A RP3-449O17.1 RNA 0.32 TCGA-VQ-A8P2-01 22 38935337 38935337 C T DMC1 Missense_Mutation p.R192H 0.30 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 22 39148588 39148588 C T SUN2 Missense_Mutation p.D16N 0.34 tolerated(0.08) benign(0.043) TCGA-VQ-A8P2-01 22 39410341 39410341 G T APOBEC3C 5'UTR 0.29 TCGA-VQ-A8P2-01 22 39414043 39414043 C A APOBEC3C Missense_Mutation p.D149E 0.43 tolerated(0.19) benign(0.009) TCGA-VQ-A8P2-01 22 39439019 39439019 C T APOBEC3F Missense_Mutation p.T32I 0.20 tolerated(0.06) benign(0.19) TCGA-VQ-A8P2-01 22 39711271 39711271 C T RPL3 Intron 0.44 TCGA-VQ-A8P2-01 22 39910156 39910156 G A MIEF1 Missense_Mutation p.R407H 0.20 tolerated(0.05) benign(0.391) TCGA-VQ-A8P2-01 22 40661431 40661431 C T TNRC6B Silent p.G399G 0.42 TCGA-VQ-A8P2-01 22 40661505 40661505 C A TNRC6B Missense_Mutation p.S424Y 0.45 deleterious(0.02) possibly_damaging(0.724) TCGA-VQ-A8P2-01 22 40696986 40696986 G A TNRC6B Missense_Mutation p.V1305I 0.20 tolerated(0.42) possibly_damaging(0.854) TCGA-VQ-A8P2-01 22 40800319 40800319 C T SGSM3 Missense_Mutation p.R76W 0.12 deleterious(0) possibly_damaging(0.556) TCGA-VQ-A8P2-01 22 40802128 40802128 C T SGSM3 Silent p.S287S 0.40 TCGA-VQ-A8P2-01 22 41077391 41077391 G A MCHR1 Missense_Mutation p.S243N 0.40 tolerated(0.15) probably_damaging(0.966) TCGA-VQ-A8P2-01 22 41215328 41215328 G T SLC25A17 5'UTR 0.38 TCGA-VQ-A8P2-01 22 41278143 41278143 C T XPNPEP3 Missense_Mutation p.T184M 0.39 deleterious(0.05) benign(0.39) TCGA-VQ-A8P2-01 22 41318410 41318410 C T XPNPEP3 Missense_Mutation p.P377S 0.37 tolerated(0.13) benign(0.024) TCGA-VQ-A8P2-01 22 41320425 41320425 C G XPNPEP3 Missense_Mutation p.D432E 0.45 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 22 41322555 41322555 G A XPNPEP3 3'UTR 0.43 TCGA-VQ-A8P2-01 22 41620734 41620734 C T L3MBTL2 Nonsense_Mutation p.R394* 0.39 TCGA-VQ-A8P2-01 22 41920853 41920853 G A ACO2 Missense_Mutation p.V496I 0.08 deleterious_low_confidence(0) benign(0.42) TCGA-VQ-A8P2-01 22 41973326 41973326 G A CSDC2 3'Flank 0.18 TCGA-VQ-A8P2-01 22 41999261 41999261 A G DESI1 Splice_Site p.X138_splice 0.44 TCGA-VQ-A8P2-01 22 42059689 42059689 A G XRCC6 Missense_Mutation p.H567R 0.46 deleterious(0.02) benign(0.187) TCGA-VQ-A8P2-01 22 42101520 42101520 G A MEI1 Missense_Mutation p.S104N 0.40 tolerated(0.46) benign(0.001) TCGA-VQ-A8P2-01 22 42221796 42221796 C T CCDC134 Missense_Mutation p.P220L 0.44 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 22 42264617 42264617 C A SREBF2 Missense_Mutation p.L181I 0.38 tolerated(0.27) probably_damaging(0.99) TCGA-VQ-A8P2-01 22 42271413 42271413 C T SREBF2 Missense_Mutation p.R388C 0.12 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 22 42276929 42276929 C T SREBF2 Silent p.D657D 0.44 TCGA-VQ-A8P2-01 22 42456208 42456208 C T NAGA 3'UTR 0.56 TCGA-VQ-A8P2-01 22 42473370 42473370 C T FAM109B Missense_Mutation p.R25C 0.16 tolerated(0.17) probably_damaging(1) TCGA-VQ-A8P2-01 22 42473409 42473409 G T FAM109B Missense_Mutation p.G38C 0.23 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8P2-01 22 42523844 42523844 G A CYP2D6 Missense_Mutation p.R329C 0.44 tolerated(0.13) benign(0.044) TCGA-VQ-A8P2-01 22 42610358 42610358 C T TCF20 Silent p.P318P 0.44 TCGA-VQ-A8P2-01 22 42970817 42970817 C T SERHL2 3'Flank 0.45 TCGA-VQ-A8P2-01 22 42987973 42987973 G A POLDIP3 Missense_Mutation p.R337W 0.42 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 22 43287079 43287079 G A PACSIN2 Silent p.F109F 0.40 TCGA-VQ-A8P2-01 22 43627874 43627874 G A SCUBE1 Silent p.N284N 0.46 TCGA-VQ-A8P2-01 22 44330512 44330512 A G PNPLA3 Silent p.G241G 0.32 TCGA-VQ-A8P2-01 22 44368124 44368124 G A SAMM50 Missense_Mutation p.A111T 0.47 deleterious(0) possibly_damaging(0.892) TCGA-VQ-A8P2-01 22 44392231 44392231 G A SAMM50 Missense_Mutation p.V460I 0.39 tolerated(0.31) benign(0.005) TCGA-VQ-A8P2-01 22 44392365 44392365 C A SAMM50 3'UTR 0.45 TCGA-VQ-A8P2-01 22 44696761 44696761 G A KIAA1644 Missense_Mutation p.A22V 0.14 deleterious(0.02) benign(0.144) TCGA-VQ-A8P2-01 22 44967288 44967288 C T LINC00207 RNA 0.40 TCGA-VQ-A8P2-01 22 45110470 45110470 G T PRR5 Splice_Site p.X68_splice 0.34 TCGA-VQ-A8P2-01 22 45204250 45204250 C T ARHGAP8 Silent p.Y199Y 0.53 TCGA-VQ-A8P2-01 22 45221432 45221432 G C ARHGAP8 Silent p.R307R 0.38 TCGA-VQ-A8P2-01 22 45258482 45258482 G T ARHGAP8 3'UTR 0.54 TCGA-VQ-A8P2-01 22 45312461 45312461 C T PHF21B Missense_Mutation p.R88Q 0.48 tolerated_low_confidence(0.2) possibly_damaging(0.883) TCGA-VQ-A8P2-01 22 45608162 45608162 G T KIAA0930 Silent p.L21L 0.31 TCGA-VQ-A8P2-01 22 45723845 45723845 C T FAM118A Silent p.G141G 0.53 TCGA-VQ-A8P2-01 22 45779373 45779373 G A SMC1B Nonsense_Mutation p.R678* 0.48 TCGA-VQ-A8P2-01 22 46628027 46628027 G A PPARA Silent p.P350P 0.17 TCGA-VQ-A8P2-01 22 46708148 46708148 G A GTSE1 Silent p.P291P 0.46 TCGA-VQ-A8P2-01 22 46932288 46932288 C T CELSR1 Silent p.A260A 0.09 TCGA-VQ-A8P2-01 22 47022780 47022780 G A GRAMD4 Silent p.S28S 0.38 TCGA-VQ-A8P2-01 22 47433094 47433094 G T TBC1D22A Missense_Mutation p.Q443H 0.41 deleterious(0.02) probably_damaging(0.999) TCGA-VQ-A8P2-01 22 50217245 50217245 C T BRD1 Missense_Mutation p.V241M 0.31 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 22 50217467 50217467 C T BRD1 Missense_Mutation p.E167K 0.11 deleterious(0.01) possibly_damaging(0.692) TCGA-VQ-A8P2-01 22 50301584 50301584 C T ALG12 Silent p.P259P 0.08 TCGA-VQ-A8P2-01 22 50303574 50303574 C T ALG12 Missense_Mutation p.R211H 0.10 possibly_damaging(0.671) TCGA-VQ-A8P2-01 22 50318091 50318091 G A CRELD2 Missense_Mutation p.G335R 0.50 deleterious(0.01) probably_damaging(0.997) TCGA-VQ-A8P2-01 22 50552903 50552903 C T MOV10L1 Silent p.D326D 0.13 TCGA-VQ-A8P2-01 22 50615911 50615911 T C PANX2 Missense_Mutation p.F257S 0.36 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 22 50636382 50636382 C T TRABD Missense_Mutation p.R268C 0.42 deleterious(0) probably_damaging(0.93) TCGA-VQ-A8P2-01 22 50655794 50655794 C T SELO Missense_Mutation p.S669L 0.21 deleterious(0) probably_damaging(0.993) TCGA-VQ-A8P2-01 22 50704923 50704923 G T MAPK11 Intron 0.38 TCGA-VQ-A8P2-01 22 50750612 50750612 C T DENND6B Missense_Mutation p.G572S 0.09 tolerated(0.88) benign(0.001) TCGA-VQ-A8P2-01 22 50869745 50869745 C T PPP6R2 Silent p.N424N 0.45 TCGA-VQ-A8P2-01 22 50899087 50899087 G A SBF1 Missense_Mutation p.R1008C 0.19 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 22 50928266 50928266 C T MIOX Missense_Mutation p.P280L 0.10 deleterious(0.03) probably_damaging(1) TCGA-VQ-A8P2-01 22 50988123 50988123 C T KLHDC7B Missense_Mutation p.R510C 0.33 deleterious(0) probably_damaging(0.994) TCGA-VQ-A8P2-01 22 51007697 51007697 C T CPT1B 3'UTR 0.42 TCGA-VQ-A8P2-01 22 51010493 51010493 C T CPT1B Missense_Mutation p.G506D 0.39 deleterious(0.01) possibly_damaging(0.905) TCGA-VQ-A8P2-01 22 51044142 51044142 G A MAPK8IP2 Missense_Mutation p.G664D 0.71 deleterious(0.03) benign(0.234) TCGA-VQ-A8P2-01 2 100007020 100007020 C T EIF5B Missense_Mutation p.P867L 0.41 possibly_damaging(0.636) TCGA-VQ-A8P2-01 2 100022463 100022463 G A REV1 Missense_Mutation p.A907V 0.13 tolerated(0.15) benign(0.003) TCGA-VQ-A8P2-01 2 100368691 100368691 G A AFF3 Missense_Mutation p.P357S 0.09 deleterious(0.02) benign(0.079) TCGA-VQ-A8P2-01 2 10102611 10102611 C T GRHL1 Missense_Mutation p.R233W 0.14 deleterious(0) probably_damaging(0.992) TCGA-VQ-A8P2-01 2 101188065 101188065 G A PDCL3 Missense_Mutation p.A128T 0.35 tolerated(0.62) benign(0.012) TCGA-VQ-A8P2-01 2 101591995 101591995 C A NPAS2 Missense_Mutation p.P453H 0.32 deleterious(0.01) possibly_damaging(0.625) TCGA-VQ-A8P2-01 2 101612039 101612039 C T NPAS2 Nonsense_Mutation p.R824* 0.20 TCGA-VQ-A8P2-01 2 101650061 101650061 A G TBC1D8 Missense_Mutation p.L573S 0.38 deleterious(0) probably_damaging(0.951) TCGA-VQ-A8P2-01 2 101666932 101666932 C T TBC1D8 Missense_Mutation p.R253Q 0.31 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 2 101706812 101706812 C T TBC1D8 Missense_Mutation p.A48T 0.23 tolerated(1) probably_damaging(0.997) TCGA-VQ-A8P2-01 2 101889441 101889441 G A CNOT11 3'Flank 0.08 TCGA-VQ-A8P2-01 2 101971819 101971819 G A CREG2 Silent p.I207I 0.36 TCGA-VQ-A8P2-01 2 102475534 102475534 C T MAP4K4 Missense_Mutation p.A491V 0.41 deleterious_low_confidence(0.01) unknown(0) TCGA-VQ-A8P2-01 2 102626090 102626090 C A IL1R2 Missense_Mutation p.P45H 0.40 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 2 102636266 102636266 G A IL1R2 Missense_Mutation p.R227H 0.43 tolerated(0.07) benign(0.064) TCGA-VQ-A8P2-01 2 102849496 102849496 C T IL1RL2 Silent p.A403A 0.30 TCGA-VQ-A8P2-01 2 103068507 103068507 C T IL18RAP Missense_Mutation p.R556C 0.17 tolerated(0.11) benign(0.219) TCGA-VQ-A8P2-01 2 103120034 103120034 T - SLC9A4 Frame_Shift_Del p.F284Lfs*32 0.28 TCGA-VQ-A8P2-01 2 103335154 103335154 G T MFSD9 Missense_Mutation p.L384M 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A8P2-01 2 10350789 10350789 C T C2orf48 3'UTR 0.38 TCGA-VQ-A8P2-01 2 105912860 105912860 C T TGFBRAP1 Missense_Mutation p.V331I 0.23 tolerated(0.19) benign(0.001) TCGA-VQ-A8P2-01 2 105915061 105915061 C T TGFBRAP1 Missense_Mutation p.D264N 0.18 tolerated(0.34) benign(0.218) TCGA-VQ-A8P2-01 2 105924735 105924735 C T TGFBRAP1 Silent p.T8T 0.24 TCGA-VQ-A8P2-01 2 106498373 106498373 C T NCK2 Silent p.T272T 0.33 TCGA-VQ-A8P2-01 2 10717826 10717826 T - NOL10 Frame_Shift_Del p.N628Mfs*4 0.50 TCGA-VQ-A8P2-01 2 107423177 107423177 G A ST6GAL2 Missense_Mutation p.A516V 0.34 benign(0.167) TCGA-VQ-A8P2-01 2 107459853 107459853 C A ST6GAL2 Missense_Mutation p.R194M 0.36 benign(0.043) TCGA-VQ-A8P2-01 2 108477340 108477340 C A RGPD4 Missense_Mutation p.P626H 0.28 deleterious(0) probably_damaging(0.953) TCGA-VQ-A8P2-01 2 108488656 108488656 G A RGPD4 Missense_Mutation p.R1399K 0.12 deleterious(0.02) probably_damaging(0.965) TCGA-VQ-A8P2-01 2 108488724 108488724 G T RGPD4 Missense_Mutation p.G1422W 0.09 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 2 108604594 108604594 C A SLC5A7 5'UTR 0.14 TCGA-VQ-A8P2-01 2 108998853 108998853 C T SULT1C4 Missense_Mutation p.A103V 0.35 tolerated(0.16) benign(0.347) TCGA-VQ-A8P2-01 2 109109212 109109212 G T GCC2 Missense_Mutation p.Q1471H 0.13 deleterious(0.04) probably_damaging(0.993) TCGA-VQ-A8P2-01 2 109116009 109116009 C T GCC2 Missense_Mutation p.L1595F 0.19 deleterious(0) probably_damaging(0.975) TCGA-VQ-A8P2-01 2 10923340 10923340 A C ATP6V1C2 Missense_Mutation p.D412A 0.43 deleterious(0) possibly_damaging(0.752) TCGA-VQ-A8P2-01 2 10929977 10929977 G A PDIA6 Silent p.G246G 0.45 TCGA-VQ-A8P2-01 2 109384100 109384100 C T RANBP2 Missense_Mutation p.R2369C 0.28 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 2 109524408 109524408 C T EDAR Missense_Mutation p.A291T 0.32 tolerated(0.42) benign(0.395) TCGA-VQ-A8P2-01 2 109546657 109546657 G A EDAR Silent p.C31C 0.09 TCGA-VQ-A8P2-01 2 110325497 110325497 C A SEPT10 Missense_Mutation p.Q219H 0.36 tolerated(0.37) benign(0.04) TCGA-VQ-A8P2-01 2 110373117 110373117 C T SOWAHC Missense_Mutation p.H351Y 0.45 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8P2-01 2 111408326 111408326 G A BUB1 Missense_Mutation p.S667L 0.29 tolerated(0.34) benign(0.001) TCGA-VQ-A8P2-01 2 111411069 111411069 C T BUB1 Silent p.A636A 0.08 TCGA-VQ-A8P2-01 2 112638201 112638201 C T ANAPC1 Missense_Mutation p.E68K 0.45 deleterious(0.01) possibly_damaging(0.475) TCGA-VQ-A8P2-01 2 112732972 112732972 G A MERTK Missense_Mutation p.S356N 0.22 tolerated(0.98) benign(0.042) TCGA-VQ-A8P2-01 2 112824586 112824586 C T TMEM87B Missense_Mutation p.T131I 0.09 tolerated(0.08) possibly_damaging(0.467) TCGA-VQ-A8P2-01 2 113069458 113069458 G - ZC3H6 Frame_Shift_Del p.G232Efs*29 0.14 TCGA-VQ-A8P2-01 2 113127724 113127724 G A RGPD8 3'UTR 0.41 TCGA-VQ-A8P2-01 2 113145975 113145975 G A RGPD8 Missense_Mutation p.A1516V 0.09 tolerated(0.27) benign(0.002) TCGA-VQ-A8P2-01 2 113333220 113333220 G A POLR1B Missense_Mutation p.D1108N 0.29 tolerated(0.11) benign(0.009) TCGA-VQ-A8P2-01 2 11355116 11355116 C A ROCK2 Nonsense_Mutation p.E596* 0.42 TCGA-VQ-A8P2-01 2 113943689 113943689 G A PSD4 Silent p.T495T 0.20 TCGA-VQ-A8P2-01 2 113953859 113953859 G A PSD4 Missense_Mutation p.M787I 0.25 tolerated(0.19) possibly_damaging(0.615) TCGA-VQ-A8P2-01 2 114000347 114000347 C T PAX8 Missense_Mutation p.R133Q 0.33 deleterious(0) probably_damaging(0.994) TCGA-VQ-A8P2-01 2 114257944 114257944 G A FOXD4L1 Missense_Mutation p.A371T 0.37 tolerated_low_confidence(0.25) benign(0.032) TCGA-VQ-A8P2-01 2 11750998 11750998 C A GREB1 Missense_Mutation p.L951M 0.36 deleterious(0.02) probably_damaging(0.997) TCGA-VQ-A8P2-01 2 11780550 11780550 G A GREB1 Silent p.P1940P 0.35 TCGA-VQ-A8P2-01 2 118579309 118579309 G T DDX18 Missense_Mutation p.R245M 0.24 deleterious(0) benign(0.197) TCGA-VQ-A8P2-01 2 118579727 118579727 C T DDX18 Missense_Mutation p.T319I 0.29 deleterious(0.01) possibly_damaging(0.813) TCGA-VQ-A8P2-01 2 11907973 11907973 G T LPIN1 Missense_Mutation p.D142Y 0.36 deleterious(0) possibly_damaging(0.87) TCGA-VQ-A8P2-01 2 120438581 120438581 A G TMEM177 Missense_Mutation p.Q51R 0.35 tolerated(0.39) benign(0.006) TCGA-VQ-A8P2-01 2 120439017 120439017 C T TMEM177 Silent p.G196G 0.32 TCGA-VQ-A8P2-01 2 1204899 1204899 C T SNTG2 Silent p.A234A 0.27 TCGA-VQ-A8P2-01 2 120858276 120858276 C T EPB41L5 Missense_Mutation p.A408V 0.57 tolerated(0.14) benign(0.008) TCGA-VQ-A8P2-01 2 121744000 121744000 C A GLI2 Silent p.P701P 0.13 TCGA-VQ-A8P2-01 2 121745998 121745998 C T GLI2 Silent p.S836S 0.30 TCGA-VQ-A8P2-01 2 121746597 121746597 C T GLI2 Missense_Mutation p.A1036V 0.50 tolerated(1) benign(0.001) TCGA-VQ-A8P2-01 2 121747852 121747852 C T GLI2 Silent p.Y1454Y 0.38 TCGA-VQ-A8P2-01 2 121747867 121747867 C T GLI2 Silent p.G1459G 0.38 TCGA-VQ-A8P2-01 2 121997187 121997187 G A TFCP2L1 Silent p.S269S 0.45 TCGA-VQ-A8P2-01 2 122159131 122159131 G A CLASP1 Missense_Mutation p.L952F 0.43 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8P2-01 2 122273275 122273275 C T CLASP1 Missense_Mutation p.A204T 0.44 tolerated(0.3) benign(0.002) TCGA-VQ-A8P2-01 2 122363333 122363333 A G CLASP1 Silent p.L47L 0.30 TCGA-VQ-A8P2-01 2 125285014 125285014 C A CNTNAP5 Missense_Mutation p.L543M 0.27 tolerated(0.67) probably_damaging(0.995) TCGA-VQ-A8P2-01 2 125671711 125671711 G A CNTNAP5 Missense_Mutation p.G1256D 0.33 deleterious(0) probably_damaging(0.912) TCGA-VQ-A8P2-01 2 127834224 127834224 A G BIN1 Missense_Mutation p.V48A 0.37 tolerated(0.11) probably_damaging(0.999) TCGA-VQ-A8P2-01 2 127958830 127958830 C T CYP27C1 Missense_Mutation p.E86K 0.43 tolerated(0.49) benign(0.01) TCGA-VQ-A8P2-01 2 128471458 128471458 G A WDR33 Missense_Mutation p.R1003C 0.30 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-VQ-A8P2-01 2 128525817 128525817 T C WDR33 Silent p.T108T 0.29 TCGA-VQ-A8P2-01 2 128628440 128628440 G T AMMECR1L Missense_Mutation p.S194Y 0.50 deleterious(0) probably_damaging(0.984) TCGA-VQ-A8P2-01 2 128927861 128927861 G A UGGT1 Splice_Site p.X974_splice 0.34 TCGA-VQ-A8P2-01 2 130899788 130899788 G A CCDC74B Silent p.G154G 0.60 TCGA-VQ-A8P2-01 2 130910634 130910634 C T SMPD4 Silent p.S751S 0.45 TCGA-VQ-A8P2-01 2 130951729 130951729 C T TUBA3E Missense_Mutation p.R229H 0.32 deleterious_low_confidence(0.01) benign(0.143) TCGA-VQ-A8P2-01 2 131116478 131116478 C T PTPN18 Silent p.G44G 0.35 TCGA-VQ-A8P2-01 2 131704112 131704112 G A ARHGEF4 Missense_Mutation p.E111K 0.40 tolerated_low_confidence(0.11) benign(0.002) TCGA-VQ-A8P2-01 2 132021757 132021757 G A POTEE Missense_Mutation p.R910H 0.15 deleterious_low_confidence(0.03) possibly_damaging(0.747) TCGA-VQ-A8P2-01 2 132274503 132274503 C T AC093838.4 RNA 0.33 TCGA-VQ-A8P2-01 2 135170466 135170466 C T MGAT5 Silent p.Y519Y 0.10 TCGA-VQ-A8P2-01 2 135745063 135745063 C T MAP3K19 Missense_Mutation p.S460N 0.43 tolerated(0.64) benign(0.002) TCGA-VQ-A8P2-01 2 135926270 135926270 G A RAB3GAP1 Silent p.L962L 0.40 TCGA-VQ-A8P2-01 2 136409535 136409535 C T R3HDM1 Missense_Mutation p.A619V 0.55 tolerated(0.07) benign(0.001) TCGA-VQ-A8P2-01 2 136423027 136423027 C T R3HDM1 Intron 0.32 TCGA-VQ-A8P2-01 2 136467701 136467701 G A R3HDM1 Missense_Mutation p.C844Y 0.17 tolerated(0.27) benign(0) TCGA-VQ-A8P2-01 2 136481577 136481577 T C R3HDM1 Silent p.F1005F 0.37 TCGA-VQ-A8P2-01 2 136545819 136545819 C A LCT 3'UTR 0.50 TCGA-VQ-A8P2-01 2 136562436 136562436 G T LCT Silent p.R1455R 0.24 TCGA-VQ-A8P2-01 2 136566490 136566490 C T LCT Missense_Mutation p.A1143T 0.38 deleterious(0.04) possibly_damaging(0.775) TCGA-VQ-A8P2-01 2 136623726 136623726 G T MCM6 Nonsense_Mutation p.C301* 0.14 TCGA-VQ-A8P2-01 2 136624145 136624145 G A MCM6 Missense_Mutation p.L257F 0.10 deleterious(0.01) probably_damaging(0.946) TCGA-VQ-A8P2-01 2 136626255 136626255 G A MCM6 Nonsense_Mutation p.R181* 0.16 TCGA-VQ-A8P2-01 2 136630277 136630277 C T MCM6 Missense_Mutation p.E82K 0.29 deleterious(0.05) possibly_damaging(0.616) TCGA-VQ-A8P2-01 2 137990472 137990472 G A THSD7B Missense_Mutation p.G640E 0.15 deleterious(0) possibly_damaging(0.494) TCGA-VQ-A8P2-01 2 140992393 140992393 A G LRP1B Missense_Mutation p.Y4541H 0.38 benign(0.029) TCGA-VQ-A8P2-01 2 141116451 141116451 C T LRP1B Silent p.S3732S 0.35 TCGA-VQ-A8P2-01 2 141459335 141459335 C T LRP1B Missense_Mutation p.V2128I 0.33 benign(0.097) TCGA-VQ-A8P2-01 2 141459736 141459736 A - LRP1B Frame_Shift_Del p.F2092Lfs*29 0.32 TCGA-VQ-A8P2-01 2 141473672 141473672 C A LRP1B Splice_Site p.X1965_splice 0.40 TCGA-VQ-A8P2-01 2 142567917 142567917 C T LRP1B Missense_Mutation p.V46I 0.35 benign(0.299) TCGA-VQ-A8P2-01 2 144245053 144245053 G A ARHGAP15 Missense_Mutation p.G272E 0.34 deleterious(0) probably_damaging(0.985) TCGA-VQ-A8P2-01 2 148672871 148672871 G A ACVR2A Missense_Mutation p.E214K 0.33 tolerated(0.08) possibly_damaging(0.555) TCGA-VQ-A8P2-01 2 149220200 149220200 C T MBD5 Missense_Mutation p.L55F 0.07 deleterious(0.01) unknown(0) TCGA-VQ-A8P2-01 2 150426631 150426631 G A MMADHC Nonsense_Mutation p.R250* 0.36 TCGA-VQ-A8P2-01 2 152292023 152292023 C T RIF1 Missense_Mutation p.A375V 0.42 tolerated(0.08) benign(0.018) TCGA-VQ-A8P2-01 2 152320527 152320527 A G RIF1 Missense_Mutation p.E1498G 0.47 deleterious(0.01) possibly_damaging(0.77) TCGA-VQ-A8P2-01 2 152320540 152320541 - A RIF1 Frame_Shift_Ins p.A1506Gfs*4 0.31 TCGA-VQ-A8P2-01 2 152321593 152321593 G T RIF1 Missense_Mutation p.E1853D 0.37 deleterious_low_confidence(0.04) benign(0.352) TCGA-VQ-A8P2-01 2 152322024 152322024 G A RIF1 Missense_Mutation p.G1997E 0.37 tolerated_low_confidence(0.13) benign(0.048) TCGA-VQ-A8P2-01 2 152381773 152381773 C A NEB Missense_Mutation p.K7392N 0.20 probably_damaging(0.975) TCGA-VQ-A8P2-01 2 152394746 152394746 C A NEB Nonsense_Mutation p.E6969* 0.10 TCGA-VQ-A8P2-01 2 152522805 152522805 A C NEB Silent p.S1610S 0.37 TCGA-VQ-A8P2-01 2 152670717 152670717 C T ARL5A Missense_Mutation p.R74H 0.08 deleterious(0.02) benign(0.111) TCGA-VQ-A8P2-01 2 152982811 152982811 C T STAM2 Missense_Mutation p.V370M 0.38 tolerated(0.91) benign(0.004) TCGA-VQ-A8P2-01 2 152989992 152989992 A G STAM2 Missense_Mutation p.V269A 0.37 tolerated(0.61) benign(0.04) TCGA-VQ-A8P2-01 2 153378497 153378497 G A FMNL2 Missense_Mutation p.R53Q 0.47 benign(0.253) TCGA-VQ-A8P2-01 2 153519623 153519623 G A PRPF40A Nonsense_Mutation p.R718* 0.36 TCGA-VQ-A8P2-01 2 155555234 155555234 G A KCNJ3 5'UTR 0.41 TCGA-VQ-A8P2-01 2 155566172 155566172 G T KCNJ3 Missense_Mutation p.G254C 0.46 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 2 155711246 155711246 T G KCNJ3 Silent p.T309T 0.38 TCGA-VQ-A8P2-01 2 15614245 15614246 - T NBAS Frame_Shift_Ins p.N515Kfs*21 0.29 TCGA-VQ-A8P2-01 2 157407127 157407127 C T GPD2 Silent p.D280D 0.34 TCGA-VQ-A8P2-01 2 15747341 15747341 C T DDX1 Missense_Mutation p.P287L 0.29 deleterious(0) probably_damaging(0.992) TCGA-VQ-A8P2-01 2 15763564 15763564 G A DDX1 Missense_Mutation p.M484I 0.11 tolerated(0.06) benign(0.017) TCGA-VQ-A8P2-01 2 15770213 15770213 G A DDX1 Missense_Mutation p.G691S 0.39 deleterious(0.05) probably_damaging(1) TCGA-VQ-A8P2-01 2 158115921 158115921 C T GALNT5 Missense_Mutation p.R443C 0.37 deleterious(0) possibly_damaging(0.776) TCGA-VQ-A8P2-01 2 158272196 158272196 C T CYTIP Missense_Mutation p.R358H 0.39 tolerated(0.13) probably_damaging(0.999) TCGA-VQ-A8P2-01 2 159077168 159077168 G A CCDC148 Missense_Mutation p.L437F 0.13 deleterious(0.02) probably_damaging(0.934) TCGA-VQ-A8P2-01 2 159195291 159195291 C A CCDC148 Missense_Mutation p.Q237H 0.45 deleterious(0.01) benign(0.048) TCGA-VQ-A8P2-01 2 160252305 160252305 G T BAZ2B Missense_Mutation p.A1017D 0.19 probably_damaging(0.999) TCGA-VQ-A8P2-01 2 160310281 160310281 C T BAZ2B Silent p.P59P 0.32 TCGA-VQ-A8P2-01 2 160663584 160663584 A G LY75-CD302 Silent p.S1630S 0.30 TCGA-VQ-A8P2-01 2 160750488 160750488 G A LY75-CD302 Missense_Mutation p.P192S 0.39 tolerated(0.42) probably_damaging(0.986) TCGA-VQ-A8P2-01 2 161052046 161052046 C T ITGB6 Missense_Mutation p.A143T 0.36 tolerated(0.09) probably_damaging(1) TCGA-VQ-A8P2-01 2 161135065 161135065 G A RBMS1 Silent p.T352T 0.18 TCGA-VQ-A8P2-01 2 163031453 163031453 T C FAP Silent p.S631S 0.42 TCGA-VQ-A8P2-01 2 163057081 163057081 G T FAP Silent p.I424I 0.23 TCGA-VQ-A8P2-01 2 163139083 163139083 G A IFIH1 Silent p.L367L 0.44 TCGA-VQ-A8P2-01 2 163216745 163216745 G A GCA Missense_Mutation p.A216T 0.39 tolerated(0.32) benign(0.01) TCGA-VQ-A8P2-01 2 164591527 164591527 G A FIGN 5'UTR 0.29 TCGA-VQ-A8P2-01 2 164591533 164591533 A G FIGN 5'UTR 0.30 TCGA-VQ-A8P2-01 2 1652327 1652327 C T PXDN Silent p.T1075T 0.37 TCGA-VQ-A8P2-01 2 1653216 1653216 C T PXDN Missense_Mutation p.R779Q 0.22 deleterious(0.01) probably_damaging(0.992) TCGA-VQ-A8P2-01 2 165947145 165947145 G T SCN3A Missense_Mutation p.P1840T 0.44 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 2 166032782 166032782 T G SCN3A Missense_Mutation p.Q41H 0.08 tolerated(0.54) benign(0.382) TCGA-VQ-A8P2-01 2 166165901 166165901 G A SCN2A Intron 0.45 TCGA-VQ-A8P2-01 2 166201250 166201250 T C SCN2A Silent p.N916N 0.42 TCGA-VQ-A8P2-01 2 166246006 166246006 C T SCN2A Missense_Mutation p.T1897M 0.38 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 2 166536086 166536086 T C CSRNP3 Silent p.P527P 0.53 TCGA-VQ-A8P2-01 2 166740494 166740494 G A TTC21B Missense_Mutation p.T1165M 0.39 deleterious(0.04) probably_damaging(0.956) TCGA-VQ-A8P2-01 2 166773819 166773819 C T TTC21B Missense_Mutation p.R616H 0.27 deleterious(0.01) probably_damaging(0.953) TCGA-VQ-A8P2-01 2 166848919 166848919 G A SCN1A Silent p.A1622A 0.09 TCGA-VQ-A8P2-01 2 166904189 166904189 A - SCN1A Frame_Shift_Del p.L373Cfs*6 0.33 TCGA-VQ-A8P2-01 2 16746919 16746919 G A FAM49A Nonsense_Mutation p.R63* 0.44 TCGA-VQ-A8P2-01 2 168099705 168099705 G A XIRP2 Silent p.R601R 0.26 TCGA-VQ-A8P2-01 2 168099780 168099780 C T XIRP2 Silent p.I626I 0.36 TCGA-VQ-A8P2-01 2 168102744 168102745 - A XIRP2 Frame_Shift_Ins p.R1616Kfs*5 0.25 TCGA-VQ-A8P2-01 2 168105479 168105479 A G XIRP2 Missense_Mutation p.E2526G 0.39 benign(0.002) TCGA-VQ-A8P2-01 2 168115174 168115174 G A XIRP2 3'UTR 0.14 TCGA-VQ-A8P2-01 2 168997245 168997245 C T STK39 Missense_Mutation p.A218T 0.12 tolerated(0.1) benign(0.122) TCGA-VQ-A8P2-01 2 169746006 169746006 A C SPC25 Silent p.L8L 0.47 TCGA-VQ-A8P2-01 2 169791908 169791908 G A ABCB11 Missense_Mutation p.R948C 0.41 deleterious(0.01) probably_damaging(0.994) TCGA-VQ-A8P2-01 2 169939909 169939909 G T DHRS9 Missense_Mutation p.E128D 0.31 tolerated(0.33) benign(0.036) TCGA-VQ-A8P2-01 2 170428490 170428490 C T FASTKD1 Missense_Mutation p.R17H 0.27 tolerated(0.29) benign(0.177) TCGA-VQ-A8P2-01 2 170488322 170488322 T A PPIG Missense_Mutation p.S270T 0.28 tolerated(0.29) unknown(0) TCGA-VQ-A8P2-01 2 170537603 170537603 C T CCDC173 Missense_Mutation p.A70T 0.08 deleterious(0.01) probably_damaging(0.965) TCGA-VQ-A8P2-01 2 170558031 170558031 G A PHOSPHO2 Missense_Mutation p.V184I 0.43 tolerated(0.25) benign(0.048) TCGA-VQ-A8P2-01 2 170606217 170606217 G A KLHL23 Missense_Mutation p.G551E 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A8P2-01 2 170668960 170668960 G A METTL5 Intron 0.06 TCGA-VQ-A8P2-01 2 170912077 170912077 G A UBR3 Missense_Mutation p.A1590T 0.40 tolerated(0.67) benign(0.001) TCGA-VQ-A8P2-01 2 171319941 171319941 G A MYO3B Missense_Mutation p.A932T 0.08 deleterious(0.01) benign(0.371) TCGA-VQ-A8P2-01 2 171323034 171323034 C T MYO3B Missense_Mutation p.L943F 0.50 deleterious(0) probably_damaging(0.992) TCGA-VQ-A8P2-01 2 171863067 171863067 C T TLK1 Missense_Mutation p.R562Q 0.43 deleterious(0) possibly_damaging(0.674) TCGA-VQ-A8P2-01 2 172325481 172325481 C T DCAF17 Missense_Mutation p.P308S 0.08 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 2 173355986 173355986 G A ITGA6 Missense_Mutation p.C939Y 0.32 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8P2-01 2 173891937 173891937 G T RAPGEF4 Missense_Mutation p.Q836H 0.34 tolerated(0.13) probably_damaging(0.935) TCGA-VQ-A8P2-01 2 174086202 174086202 G A MLTK Intron 0.26 TCGA-VQ-A8P2-01 2 174783366 174783366 C T SP3 Missense_Mutation p.R596Q 0.34 tolerated(0.07) benign(0.07) TCGA-VQ-A8P2-01 2 174820366 174820366 C T SP3 Missense_Mutation p.A292T 0.40 deleterious(0.05) benign(0.008) TCGA-VQ-A8P2-01 2 174946667 174946667 G A OLA1 Missense_Mutation p.A285V 0.11 deleterious(0.02) benign(0.005) TCGA-VQ-A8P2-01 2 175216391 175216391 G A CIR1 Nonsense_Mutation p.R183* 0.09 TCGA-VQ-A8P2-01 2 175618125 175618125 G A CHRNA1 Intron 0.24 TCGA-VQ-A8P2-01 2 175994917 175994917 C T ATF2 Nonsense_Mutation p.W17* 0.31 TCGA-VQ-A8P2-01 2 176804328 176804328 G T KIAA1715 Missense_Mutation p.A255D 0.30 tolerated(0.06) benign(0.081) TCGA-VQ-A8P2-01 2 176957897 176957897 C T HOXD13 Silent p.A93A 0.10 TCGA-VQ-A8P2-01 2 176959215 176959215 G A HOXD13 Silent p.V263V 0.48 TCGA-VQ-A8P2-01 2 176964838 176964838 C T HOXD12 Silent p.P103P 0.41 TCGA-VQ-A8P2-01 2 17698737 17698737 T - RAD51AP2 Frame_Shift_Del p.T316Lfs*2 0.29 TCGA-VQ-A8P2-01 2 176995511 176995511 C T HOXD8 Silent p.Y139Y 0.37 TCGA-VQ-A8P2-01 2 177036352 177036352 C T HOXD3 Missense_Mutation p.R217C 0.25 deleterious(0) probably_damaging(0.965) TCGA-VQ-A8P2-01 2 178081474 178081474 C A HNRNPA3 Silent p.G238G 0.37 TCGA-VQ-A8P2-01 2 178483076 178483076 C T TTC30A Silent p.L118L 0.49 TCGA-VQ-A8P2-01 2 178483399 178483399 C T TTC30A Missense_Mutation p.D11N 0.40 deleterious(0) benign(0.292) TCGA-VQ-A8P2-01 2 178494130 178494130 G A PDE11A 3'UTR 0.39 TCGA-VQ-A8P2-01 2 178576510 178576510 C T PDE11A Missense_Mutation p.A714T 0.35 tolerated(0.07) probably_damaging(0.989) TCGA-VQ-A8P2-01 2 178936346 178936346 C A PDE11A Missense_Mutation p.E273D 0.23 tolerated(0.34) probably_damaging(0.973) TCGA-VQ-A8P2-01 2 179197732 179197732 C T OSBPL6 Silent p.S207S 0.38 TCGA-VQ-A8P2-01 2 179325961 179325961 C T DFNB59 Missense_Mutation p.A340V 0.11 tolerated_low_confidence(0.53) benign(0.029) TCGA-VQ-A8P2-01 2 179395423 179395423 C T TTN Missense_Mutation p.V35307I 0.41 TCGA-VQ-A8P2-01 2 179398278 179398278 G T TTN Missense_Mutation p.P34355H 0.25 TCGA-VQ-A8P2-01 2 179402308 179402308 G A TTN Missense_Mutation p.A33209V 0.36 TCGA-VQ-A8P2-01 2 179407864 179407864 G T TTN Missense_Mutation p.A32279E 0.10 TCGA-VQ-A8P2-01 2 179414977 179414977 G A TTN Missense_Mutation p.P30530S 0.35 TCGA-VQ-A8P2-01 2 179427094 179427094 G T TTN Missense_Mutation p.T27922N 0.29 TCGA-VQ-A8P2-01 2 179435898 179435898 G A TTN Silent p.N24987N 0.34 TCGA-VQ-A8P2-01 2 179440287 179440287 T C TTN Silent p.T23524T 0.37 TCGA-VQ-A8P2-01 2 179456539 179456539 G A TTN Missense_Mutation p.R20003C 0.29 TCGA-VQ-A8P2-01 2 179471919 179471919 T G TTN Missense_Mutation p.K17804Q 0.13 TCGA-VQ-A8P2-01 2 179490009 179490009 A C TTN Missense_Mutation p.F14847V 0.34 TCGA-VQ-A8P2-01 2 179529217 179529217 G A TTN Missense_Mutation p.P12084S 0.29 TCGA-VQ-A8P2-01 2 179552841 179552841 C T TTN Missense_Mutation p.E10770K 0.37 TCGA-VQ-A8P2-01 2 179578658 179578658 G A TTN Silent p.G8909G 0.38 TCGA-VQ-A8P2-01 2 179582358 179582358 C T TTN Missense_Mutation p.A8415T 0.33 TCGA-VQ-A8P2-01 2 179588844 179588844 G A TTN Nonsense_Mutation p.R7048* 0.36 TCGA-VQ-A8P2-01 2 179602879 179602879 G A TTN Silent p.C4767C 0.27 TCGA-VQ-A8P2-01 2 179606019 179606019 T C TTN Missense_Mutation p.S3981G 0.42 TCGA-VQ-A8P2-01 2 179612429 179612429 C T TTN Intron 0.45 TCGA-VQ-A8P2-01 2 17963109 17963109 C A GEN1 Missense_Mutation p.S877Y 0.33 tolerated(1) benign(0.004) TCGA-VQ-A8P2-01 2 179634405 179634405 C T TTN Splice_Site p.X2968_splice 0.53 TCGA-VQ-A8P2-01 2 179647297 179647297 C T TTN Missense_Mutation p.V1045M 0.17 TCGA-VQ-A8P2-01 2 179659843 179659843 C T TTN Missense_Mutation p.V351M 0.28 TCGA-VQ-A8P2-01 2 179702008 179702008 T A CCDC141 Missense_Mutation p.H1313L 0.23 tolerated(0.65) benign(0.005) TCGA-VQ-A8P2-01 2 179736984 179736984 G A CCDC141 Missense_Mutation p.T652I 0.32 tolerated(0.41) benign(0.018) TCGA-VQ-A8P2-01 2 179737029 179737029 T A CCDC141 Missense_Mutation p.N637I 0.64 deleterious(0) benign(0.054) TCGA-VQ-A8P2-01 2 179974676 179974676 G T SESTD1 Missense_Mutation p.L681I 0.08 deleterious_low_confidence(0.05) benign(0.101) TCGA-VQ-A8P2-01 2 17997941 17997941 G A MSGN1 Silent p.S52S 0.39 TCGA-VQ-A8P2-01 2 180348034 180348034 A G ZNF385B Missense_Mutation p.I212T 0.36 tolerated(0.68) benign(0) TCGA-VQ-A8P2-01 2 180409625 180409625 C A ZNF385B Missense_Mutation p.D109Y 0.41 deleterious(0) possibly_damaging(0.898) TCGA-VQ-A8P2-01 2 180809958 180809958 G A CWC22 Silent p.A875A 0.43 TCGA-VQ-A8P2-01 2 180815330 180815330 G A CWC22 Silent p.S683S 0.26 TCGA-VQ-A8P2-01 2 182322998 182322998 C A ITGA4 Nonsense_Mutation p.C91* 0.55 TCGA-VQ-A8P2-01 2 182468772 182468772 T C CERKL Silent p.E91E 0.14 TCGA-VQ-A8P2-01 2 182766913 182766913 G T SSFA2 Missense_Mutation p.R378I 0.38 deleterious(0.05) benign(0.361) TCGA-VQ-A8P2-01 2 182850727 182850727 G C PPP1R1C 5'UTR 0.53 TCGA-VQ-A8P2-01 2 183387161 183387161 C T PDE1A 5'UTR 0.30 TCGA-VQ-A8P2-01 2 183622521 183622521 C T DNAJC10 Missense_Mutation p.P638S 0.35 tolerated(0.13) possibly_damaging(0.817) TCGA-VQ-A8P2-01 2 183730902 183730902 G A FRZB Missense_Mutation p.R127C 0.24 deleterious(0) possibly_damaging(0.718) TCGA-VQ-A8P2-01 2 185802557 185802557 C T ZNF804A Missense_Mutation p.R812W 0.31 deleterious(0.03) benign(0.001) TCGA-VQ-A8P2-01 2 186670036 186670037 - A FSIP2 Frame_Shift_Ins p.M5426Nfs*8 0.35 TCGA-VQ-A8P2-01 2 187366110 187366110 C T ZC3H15 Nonsense_Mutation p.R134* 0.28 TCGA-VQ-A8P2-01 2 187520984 187520984 G T ITGAV Silent p.V525V 0.32 TCGA-VQ-A8P2-01 2 187523774 187523774 G A ITGAV Missense_Mutation p.E577K 0.12 deleterious(0.01) benign(0.248) TCGA-VQ-A8P2-01 2 18764262 18764262 G A NT5C1B Missense_Mutation p.A358V 0.40 deleterious(0.01) benign(0.423) TCGA-VQ-A8P2-01 2 189916942 189916942 C A COL5A2 Nonsense_Mutation p.G909* 0.27 TCGA-VQ-A8P2-01 2 190340177 190340177 G A WDR75 3'UTR 0.42 TCGA-VQ-A8P2-01 2 190541690 190541690 G A ANKAR Nonsense_Mutation p.W158* 0.42 TCGA-VQ-A8P2-01 2 190608073 190608073 G A ANKAR Missense_Mutation p.E1295K 0.43 tolerated(0.2) benign(0.288) TCGA-VQ-A8P2-01 2 191524046 191524047 - T NAB1 Frame_Shift_Ins p.L50Ffs*11 0.33 TCGA-VQ-A8P2-01 2 192701020 192701020 G A SDPR Nonsense_Mutation p.R303* 0.41 TCGA-VQ-A8P2-01 2 196729054 196729054 C T DNAH7 Missense_Mutation p.R2442H 0.51 deleterious(0.02) probably_damaging(0.982) TCGA-VQ-A8P2-01 2 196765097 196765097 C T DNAH7 Missense_Mutation p.R1486H 0.46 deleterious(0) probably_damaging(0.992) TCGA-VQ-A8P2-01 2 196822012 196822012 C A DNAH7 Missense_Mutation p.W1017C 0.14 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 2 196834764 196834764 C T DNAH7 Missense_Mutation p.E705K 0.15 tolerated(0.07) benign(0.071) TCGA-VQ-A8P2-01 2 197172783 197172783 C T HECW2 Missense_Mutation p.G821S 0.31 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 2 197541384 197541384 C T CCDC150 Nonsense_Mutation p.R457* 0.40 TCGA-VQ-A8P2-01 2 197650172 197650172 G A GTF3C3 Missense_Mutation p.A345V 0.15 tolerated(0.06) benign(0.104) TCGA-VQ-A8P2-01 2 197653994 197653994 C T GTF3C3 Missense_Mutation p.R276H 0.33 tolerated(0.1) benign(0.133) TCGA-VQ-A8P2-01 2 198257062 198257062 T C SF3B1 Missense_Mutation p.T1294A 0.38 tolerated(0.67) benign(0.002) TCGA-VQ-A8P2-01 2 198257884 198257884 C T SF3B1 Missense_Mutation p.A1190T 0.42 tolerated(0.72) benign(0.009) TCGA-VQ-A8P2-01 2 198265128 198265128 C T SF3B1 Missense_Mutation p.V917M 0.37 deleterious(0.01) possibly_damaging(0.863) TCGA-VQ-A8P2-01 2 198273107 198273107 G T SF3B1 Missense_Mutation p.A368D 0.32 tolerated(0.15) benign(0.012) TCGA-VQ-A8P2-01 2 198288548 198288548 G A SF3B1 Missense_Mutation p.A60V 0.47 tolerated_low_confidence(0.56) benign(0.004) TCGA-VQ-A8P2-01 2 198498615 198498615 G A RFTN2 Missense_Mutation p.S182L 0.39 tolerated(0.16) benign(0.013) TCGA-VQ-A8P2-01 2 198949539 198949539 G T PLCL1 Missense_Mutation p.R433I 0.15 deleterious(0) probably_damaging(0.962) TCGA-VQ-A8P2-01 2 200298128 200298128 A - SATB2 Frame_Shift_Del p.F93Lfs*25 0.10 TCGA-VQ-A8P2-01 2 201284107 201284107 C T SPATS2L Silent p.C111C 0.35 TCGA-VQ-A8P2-01 2 201437241 201437241 T C SGOL2 Silent p.S724S 0.30 TCGA-VQ-A8P2-01 2 201485959 201485959 C T AOX1 Missense_Mutation p.A664V 0.28 tolerated(0.06) benign(0.033) TCGA-VQ-A8P2-01 2 201784967 201784967 G A ORC2 Nonsense_Mutation p.R482* 0.13 TCGA-VQ-A8P2-01 2 20206010 20206010 C T MATN3 Silent p.R95R 0.44 TCGA-VQ-A8P2-01 2 202060603 202060603 G A CASP10 Missense_Mutation p.E206K 0.30 tolerated(0.32) benign(0.125) TCGA-VQ-A8P2-01 2 202073924 202073924 G A CASP10 Missense_Mutation p.V352M 0.12 deleterious(0) probably_damaging(0.986) TCGA-VQ-A8P2-01 2 202215449 202215449 G T ALS2CR12 Missense_Mutation p.P57H 0.26 deleterious(0) probably_damaging(0.955) TCGA-VQ-A8P2-01 2 202245799 202245799 T C TRAK2 Missense_Mutation p.T738A 0.40 tolerated(0.09) possibly_damaging(0.679) TCGA-VQ-A8P2-01 2 202245876 202245876 G T TRAK2 Missense_Mutation p.S712Y 0.41 deleterious(0) probably_damaging(0.956) TCGA-VQ-A8P2-01 2 202466489 202466489 G A ALS2CR11 Silent p.F163F 0.32 TCGA-VQ-A8P2-01 2 202509885 202509885 G A MPP4 3'UTR 0.25 TCGA-VQ-A8P2-01 2 202606545 202606545 A G ALS2 Silent p.L735L 0.47 TCGA-VQ-A8P2-01 2 202672310 202672310 C T CDK15 Missense_Mutation p.P73S 0.39 tolerated_low_confidence(0.07) benign(0.343) TCGA-VQ-A8P2-01 2 202899443 202899443 G A FZD7 Missense_Mutation p.A25T 0.19 tolerated(0.66) possibly_damaging(0.499) TCGA-VQ-A8P2-01 2 202899724 202899724 G A FZD7 Silent p.P118P 0.41 TCGA-VQ-A8P2-01 2 202900121 202900121 C T FZD7 Missense_Mutation p.R251C 0.32 deleterious(0.01) possibly_damaging(0.849) TCGA-VQ-A8P2-01 2 203329665 203329665 G A BMPR2 Nonsense_Mutation p.W70* 0.48 TCGA-VQ-A8P2-01 2 203384914 203384914 A G BMPR2 Silent p.L319L 0.43 TCGA-VQ-A8P2-01 2 203420346 203420346 C A BMPR2 Missense_Mutation p.P653H 0.46 deleterious(0) probably_damaging(0.981) TCGA-VQ-A8P2-01 2 203424698 203424699 - T BMPR2 3'UTR 0.12 TCGA-VQ-A8P2-01 2 203772676 203772676 G A WDR12 Silent p.A16A 0.35 TCGA-VQ-A8P2-01 2 203831740 203831740 G T CARF Missense_Mutation p.R291I 0.38 deleterious(0) possibly_damaging(0.831) TCGA-VQ-A8P2-01 2 204110593 204110593 C T CYP20A1 Missense_Mutation p.P33S 0.27 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 2 204137381 204137381 A G CYP20A1 Intron 0.14 TCGA-VQ-A8P2-01 2 204291988 204291988 C T ABI2 Silent p.D447D 0.39 TCGA-VQ-A8P2-01 2 204304837 204304838 - G RAPH1 Frame_Shift_Ins p.K1026Qfs*47 0.33 TCGA-VQ-A8P2-01 2 204591492 204591492 G A CD28 Silent p.V63V 0.15 TCGA-VQ-A8P2-01 2 204801509 204801509 G A ICOS 5'UTR 0.35 TCGA-VQ-A8P2-01 2 20512053 20512053 C T PUM2 Missense_Mutation p.V98I 0.38 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-VQ-A8P2-01 2 206037055 206037055 C T PARD3B Nonsense_Mutation p.R519* 0.40 TCGA-VQ-A8P2-01 2 206305347 206305347 C T PARD3B Missense_Mutation p.L937F 0.44 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 2 206580995 206580995 G A NRP2 Silent p.P110P 0.09 TCGA-VQ-A8P2-01 2 206870181 206870181 G A INO80D Silent p.L665L 0.15 TCGA-VQ-A8P2-01 2 206921479 206921479 G A INO80D Missense_Mutation p.A136V 0.25 tolerated_low_confidence(0.15) benign(0.039) TCGA-VQ-A8P2-01 2 207003257 207003257 G A NDUFS1 Silent p.S462S 0.10 TCGA-VQ-A8P2-01 2 207007428 207007428 A G NDUFS1 Missense_Mutation p.F386S 0.51 tolerated(0.37) possibly_damaging(0.716) TCGA-VQ-A8P2-01 2 207513445 207513445 T C DYTN 3'Flank 0.33 TCGA-VQ-A8P2-01 2 207652863 207652863 A G FASTKD2 Silent p.P599P 0.50 TCGA-VQ-A8P2-01 2 208030313 208030313 C T KLF7 5'UTR 0.62 TCGA-VQ-A8P2-01 2 20818783 20818783 G A HS1BP3 Silent p.H381H 0.45 TCGA-VQ-A8P2-01 2 20818988 20818988 T C HS1BP3 Missense_Mutation p.D313G 0.46 deleterious(0) benign(0.059) TCGA-VQ-A8P2-01 2 209036736 209036736 C T C2orf80 Missense_Mutation p.A144T 0.08 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 2 209045983 209045983 G A C2orf80 Nonsense_Mutation p.R85* 0.33 TCGA-VQ-A8P2-01 2 209358024 209358024 G T PTH2R Missense_Mutation p.W431C 0.45 deleterious(0.03) probably_damaging(0.999) TCGA-VQ-A8P2-01 2 210874462 210874462 T C RPE Splice_Site p.X68_splice 0.09 TCGA-VQ-A8P2-01 2 210905103 210905103 A - KANSL1L Intron 0.35 TCGA-VQ-A8P2-01 2 21230987 21230987 T C APOB Missense_Mutation p.H2918R 0.46 possibly_damaging(0.598) TCGA-VQ-A8P2-01 2 21231629 21231629 G A APOB Missense_Mutation p.A2704V 0.40 benign(0.383) TCGA-VQ-A8P2-01 2 21234285 21234285 G T APOB Missense_Mutation p.L1819M 0.11 probably_damaging(0.997) TCGA-VQ-A8P2-01 2 21245798 21245798 G A APOB Silent p.H907H 0.38 TCGA-VQ-A8P2-01 2 212589910 212589910 G A ERBB4 Missense_Mutation p.T211M 0.51 tolerated(0.22) possibly_damaging(0.801) TCGA-VQ-A8P2-01 2 212812317 212812317 C T ERBB4 Missense_Mutation p.V87M 0.50 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8P2-01 2 214204963 214204964 - A SPAG16 Frame_Shift_Ins p.N207Kfs*5 0.17 TCGA-VQ-A8P2-01 2 214215285 214215285 T C SPAG16 Silent p.T226T 0.43 TCGA-VQ-A8P2-01 2 216246972 216246972 G A FN1 Silent p.S1709S 0.32 TCGA-VQ-A8P2-01 2 216300403 216300403 G A FN1 Silent p.S41S 0.30 TCGA-VQ-A8P2-01 2 216960702 216960702 G T TMEM169 Missense_Mutation p.A6S 0.36 tolerated_low_confidence(0.43) benign(0.018) TCGA-VQ-A8P2-01 2 216974156 216974156 C T XRCC5 5'UTR 0.17 TCGA-VQ-A8P2-01 2 217142404 217142404 C T MARCH4 Missense_Mutation p.V286M 0.07 deleterious(0) probably_damaging(0.945) TCGA-VQ-A8P2-01 2 217279875 217279875 G A SMARCAL1 Missense_Mutation p.A150T 0.32 tolerated(0.07) benign(0.011) TCGA-VQ-A8P2-01 2 217329380 217329380 C T SMARCAL1 Missense_Mutation p.P711S 0.38 tolerated(0.13) possibly_damaging(0.621) TCGA-VQ-A8P2-01 2 218678512 218678512 G A TNS1 Missense_Mutation p.P1482L 0.52 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 2 218683157 218683157 C T TNS1 Missense_Mutation p.G1196S 0.21 tolerated(0.19) benign(0.015) TCGA-VQ-A8P2-01 2 218713674 218713674 T C TNS1 Silent p.E397E 0.38 TCGA-VQ-A8P2-01 2 218808 218808 G A SH3YL1 3'UTR 0.25 TCGA-VQ-A8P2-01 2 219029255 219029255 C T CXCR1 Missense_Mutation p.R227H 0.44 tolerated(0.63) benign(0.022) TCGA-VQ-A8P2-01 2 219029504 219029504 C T CXCR1 Missense_Mutation p.R144H 0.11 tolerated(0.11) benign(0.035) TCGA-VQ-A8P2-01 2 219128164 219128164 C A GPBAR1 Silent p.P239P 0.56 TCGA-VQ-A8P2-01 2 219267411 219267411 C A CTDSP1 Intron 0.88 TCGA-VQ-A8P2-01 2 219414619 219414619 A T USP37 Silent p.S114S 0.39 TCGA-VQ-A8P2-01 2 219500575 219500575 G T PLCD4 Silent p.V651V 0.32 TCGA-VQ-A8P2-01 2 219503413 219503413 G A ZNF142 Silent p.G1571G 0.42 TCGA-VQ-A8P2-01 2 219508570 219508570 G A ZNF142 Missense_Mutation p.P890L 0.08 deleterious(0) possibly_damaging(0.713) TCGA-VQ-A8P2-01 2 219528643 219528643 C T RNF25 3'UTR 0.32 TCGA-VQ-A8P2-01 2 219540121 219540121 G A STK36 Missense_Mutation p.R120H 0.10 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 2 219603188 219603188 G A TTLL4 Silent p.P263P 0.11 TCGA-VQ-A8P2-01 2 219614825 219614825 G T TTLL4 Missense_Mutation p.E943D 0.35 tolerated(0.51) benign(0.008) TCGA-VQ-A8P2-01 2 219691785 219691785 T C PRKAG3 Missense_Mutation p.Y345C 0.42 tolerated(0.11) benign(0.001) TCGA-VQ-A8P2-01 2 219692572 219692572 C A PRKAG3 Missense_Mutation p.K268N 0.10 deleterious(0.02) possibly_damaging(0.812) TCGA-VQ-A8P2-01 2 219694859 219694859 G T PRKAG3 Missense_Mutation p.L159M 0.28 tolerated(0.16) benign(0.005) TCGA-VQ-A8P2-01 2 219754762 219754762 G A WNT10A Missense_Mutation p.V145M 0.36 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 2 219825141 219825141 G A CDK5R2 Missense_Mutation p.R200H 0.60 deleterious(0) benign(0.192) TCGA-VQ-A8P2-01 2 219856929 219856929 C A CRYBA2 Missense_Mutation p.Q66H 0.29 deleterious(0) probably_damaging(0.984) TCGA-VQ-A8P2-01 2 219892637 219892637 G - CCDC108 Frame_Shift_Del p.P649Rfs*5 0.28 TCGA-VQ-A8P2-01 2 220089407 220089407 G T ATG9A Missense_Mutation p.P229H 0.33 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 2 220145305 220145305 G A DNAJB2 Missense_Mutation p.R24Q 0.17 deleterious(0) probably_damaging(0.925) TCGA-VQ-A8P2-01 2 220286186 220286186 G A DES Missense_Mutation p.R383H 0.57 deleterious(0.03) probably_damaging(0.993) TCGA-VQ-A8P2-01 2 220419234 220419234 G A OBSL1 Missense_Mutation p.A1613V 0.35 tolerated(0.23) benign(0.052) TCGA-VQ-A8P2-01 2 220424077 220424077 G A OBSL1 Silent p.S1032S 0.40 TCGA-VQ-A8P2-01 2 220432061 220432061 G A OBSL1 Missense_Mutation p.R591C 0.45 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 2 220471794 220471794 G A STK11IP Missense_Mutation p.R396Q 0.23 tolerated(0.08) benign(0.041) TCGA-VQ-A8P2-01 2 220497630 220497630 G T SLC4A3 Silent p.L419L 0.47 TCGA-VQ-A8P2-01 2 223436710 223436710 C A FARSB Missense_Mutation p.E550D 0.35 tolerated(0.46) benign(0) TCGA-VQ-A8P2-01 2 223507644 223507644 A G FARSB Silent p.I65I 0.44 TCGA-VQ-A8P2-01 2 224776978 224776978 C T WDFY1 Missense_Mutation p.A91T 0.29 tolerated(1) benign(0.003) TCGA-VQ-A8P2-01 2 225342967 225342967 G A CUL3 Missense_Mutation p.R709W 0.38 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 2 227660254 227660254 C T IRS1 Silent p.G1067G 0.13 TCGA-VQ-A8P2-01 2 227662210 227662210 C T IRS1 Silent p.S415S 0.09 TCGA-VQ-A8P2-01 2 227663348 227663348 C T IRS1 Missense_Mutation p.S36N 0.12 deleterious(0.01) probably_damaging(0.996) TCGA-VQ-A8P2-01 2 227663358 227663358 G A IRS1 Missense_Mutation p.R33C 0.32 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 2 228134685 228134685 C T COL4A3 Missense_Mutation p.P522S 0.12 probably_damaging(0.941) TCGA-VQ-A8P2-01 2 228564103 228564103 C A SLC19A3 Nonsense_Mutation p.E110* 0.38 TCGA-VQ-A8P2-01 2 228681061 228681062 - A CCL20 Frame_Shift_Ins p.Q79Tfs*13 0.11 TCGA-VQ-A8P2-01 2 230282932 230282932 A G DNER Missense_Mutation p.Y501H 0.45 tolerated(0.17) benign(0.044) TCGA-VQ-A8P2-01 2 230377613 230377613 T A DNER Missense_Mutation p.T345S 0.43 tolerated(0.73) benign(0.004) TCGA-VQ-A8P2-01 2 230668810 230668810 C T TRIP12 Silent p.A853A 0.41 TCGA-VQ-A8P2-01 2 231110598 231110598 C T SP140 Nonsense_Mutation p.Q229* 0.37 TCGA-VQ-A8P2-01 2 231176193 231176193 G T SP140 Missense_Mutation p.K796N 0.26 deleterious(0) probably_damaging(0.954) TCGA-VQ-A8P2-01 2 231327147 231327147 C T SP100 Intron 0.21 TCGA-VQ-A8P2-01 2 231331900 231331900 G A SP100 Missense_Mutation p.G421R 0.41 tolerated(0.43) benign(0.004) TCGA-VQ-A8P2-01 2 231379968 231379968 C A SP100 Intron 0.13 TCGA-VQ-A8P2-01 2 231742168 231742168 G A ITM2C Silent p.T205T 0.19 TCGA-VQ-A8P2-01 2 232028371 232028371 C T PSMD1 Missense_Mutation p.S804L 0.13 deleterious(0) probably_damaging(0.948) TCGA-VQ-A8P2-01 2 232262773 232262773 C T B3GNT7 Missense_Mutation p.R115C 0.16 deleterious(0) possibly_damaging(0.849) TCGA-VQ-A8P2-01 2 232263162 232263162 C T B3GNT7 Silent p.F244F 0.09 TCGA-VQ-A8P2-01 2 232389872 232389872 C T NMUR1 Missense_Mutation p.S388N 0.42 tolerated(0.08) benign(0.008) TCGA-VQ-A8P2-01 2 233322729 233322729 C T ALPI Missense_Mutation p.T293M 0.45 tolerated(1) benign(0.003) TCGA-VQ-A8P2-01 2 233349933 233349933 G A ECEL1 Silent p.L277L 0.43 TCGA-VQ-A8P2-01 2 233405097 233405097 C T CHRNG Nonsense_Mutation p.R68* 0.26 TCGA-VQ-A8P2-01 2 233405108 233405108 C T CHRNG Silent p.A71A 0.28 TCGA-VQ-A8P2-01 2 233409145 233409145 G T CHRNG Missense_Mutation p.Q368H 0.11 tolerated(0.18) benign(0.005) TCGA-VQ-A8P2-01 2 233546406 233546406 C G EFHD1 Missense_Mutation p.L233V 0.35 deleterious(0.01) probably_damaging(0.996) TCGA-VQ-A8P2-01 2 233748770 233748770 G T NGEF Missense_Mutation p.L508M 0.30 tolerated(0.35) possibly_damaging(0.693) TCGA-VQ-A8P2-01 2 234436201 234436201 T C USP40 Missense_Mutation p.N537S 0.42 tolerated(0.07) benign(0.426) TCGA-VQ-A8P2-01 2 234449312 234449312 C T USP40 Missense_Mutation p.R400Q 0.25 tolerated(0.36) possibly_damaging(0.726) TCGA-VQ-A8P2-01 2 234545408 234545408 G A UGT1A10 Silent p.S80S 0.45 TCGA-VQ-A8P2-01 2 234601954 234601954 C T UGT1A6 Nonsense_Mutation p.R102* 0.41 TCGA-VQ-A8P2-01 2 234602213 234602213 C A UGT1A6 Missense_Mutation p.P188H 0.46 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 2 234627582 234627582 G A UGT1A4 Missense_Mutation p.S39N 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A8P2-01 2 234637815 234637815 G T UGT1A3 Nonsense_Mutation p.G15* 0.12 TCGA-VQ-A8P2-01 2 234652133 234652133 G T UGT1A10 Intron 0.43 TCGA-VQ-A8P2-01 2 234858699 234858699 C G TRPM8 Missense_Mutation p.T350R 0.30 deleterious(0.01) benign(0.132) TCGA-VQ-A8P2-01 2 235949935 235949935 C T SH3BP4 Silent p.N174N 0.37 TCGA-VQ-A8P2-01 2 236715904 236715904 G A AGAP1 Missense_Mutation p.D327N 0.38 tolerated(0.18) probably_damaging(0.996) TCGA-VQ-A8P2-01 2 236817478 236817478 G A AGAP1 Missense_Mutation p.A418T 0.13 tolerated(0.19) benign(0.034) TCGA-VQ-A8P2-01 2 237076120 237076120 G A GBX2 Silent p.S165S 0.24 TCGA-VQ-A8P2-01 2 237374343 237374343 G T IQCA1 Missense_Mutation p.P244H 0.42 deleterious(0.01) benign(0.365) TCGA-VQ-A8P2-01 2 237489334 237489334 G T ACKR3 Missense_Mutation p.G76C 0.14 deleterious(0.01) probably_damaging(0.975) TCGA-VQ-A8P2-01 2 238249401 238249401 C T COL6A3 Missense_Mutation p.E2720K 0.37 unknown(0) TCGA-VQ-A8P2-01 2 238266486 238266486 C A COL6A3 Nonsense_Mutation p.G2171* 0.32 TCGA-VQ-A8P2-01 2 238457876 238457876 C T MLPH Missense_Mutation p.P544S 0.47 deleterious(0.05) benign(0.391) TCGA-VQ-A8P2-01 2 239050041 239050041 C T KLHL30 Missense_Mutation p.P216S 0.33 deleterious(0) probably_damaging(0.985) TCGA-VQ-A8P2-01 2 239056533 239056533 G A KLHL30 Silent p.T403T 0.41 TCGA-VQ-A8P2-01 2 239090804 239090804 C A ILKAP Missense_Mutation p.E246D 0.36 tolerated(0.24) benign(0.014) TCGA-VQ-A8P2-01 2 239102934 239102934 C T ILKAP Missense_Mutation p.A54T 0.38 tolerated(0.18) possibly_damaging(0.647) TCGA-VQ-A8P2-01 2 239162215 239162215 C T PER2 Missense_Mutation p.V817M 0.48 tolerated(0.23) benign(0.004) TCGA-VQ-A8P2-01 2 239237441 239237441 G T TRAF3IP1 Nonsense_Mutation p.E157* 0.44 TCGA-VQ-A8P2-01 2 240016750 240016750 A G HDAC4 Missense_Mutation p.S741P 0.07 tolerated(0.28) benign(0.007) TCGA-VQ-A8P2-01 2 241439888 241439888 C T ANKMY1 Missense_Mutation p.G785D 0.38 deleterious(0) probably_damaging(0.98) TCGA-VQ-A8P2-01 2 241514530 241514530 G T RNPEPL1 Missense_Mutation p.D227Y 0.29 deleterious(0.03) possibly_damaging(0.817) TCGA-VQ-A8P2-01 2 242035266 242035266 G T MTERFD2 3'UTR 0.38 TCGA-VQ-A8P2-01 2 242065692 242065692 G A PASK Missense_Mutation p.R880C 0.30 deleterious(0.05) benign(0.305) TCGA-VQ-A8P2-01 2 242066073 242066073 C A PASK Missense_Mutation p.D753Y 0.37 deleterious(0) possibly_damaging(0.902) TCGA-VQ-A8P2-01 2 242066347 242066347 C T PASK Silent p.L661L 0.08 TCGA-VQ-A8P2-01 2 242162615 242162615 G A ANO7 Missense_Mutation p.R833Q 0.29 deleterious(0.01) probably_damaging(0.997) TCGA-VQ-A8P2-01 2 242173330 242173330 G A HDLBP Missense_Mutation p.P1065S 0.37 tolerated(0.26) possibly_damaging(0.714) TCGA-VQ-A8P2-01 2 242195753 242195753 G A HDLBP Missense_Mutation p.P240L 0.46 deleterious(0) probably_damaging(0.957) TCGA-VQ-A8P2-01 2 24246469 24246469 G A MFSD2B Missense_Mutation p.V396M 0.19 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 2 24291236 24291236 A G SF3B14 Silent p.N81N 0.08 TCGA-VQ-A8P2-01 2 25044435 25044435 C T ADCY3 Silent p.T1026T 0.43 TCGA-VQ-A8P2-01 2 25057375 25057375 A G ADCY3 Missense_Mutation p.V649A 0.53 tolerated(0.21) benign(0.146) TCGA-VQ-A8P2-01 2 25141532 25141532 C T ADCY3 Missense_Mutation p.A109T 0.35 tolerated(0.41) benign(0) TCGA-VQ-A8P2-01 2 25965311 25965311 C A ASXL2 Missense_Mutation p.D1299Y 0.50 deleterious(0) probably_damaging(0.977) TCGA-VQ-A8P2-01 2 26177193 26177193 C T KIF3C Missense_Mutation p.R611H 0.31 benign(0.154) TCGA-VQ-A8P2-01 2 26204211 26204211 C A KIF3C Missense_Mutation p.E192D 0.37 probably_damaging(0.997) TCGA-VQ-A8P2-01 2 26533735 26533735 G T GPR113 Missense_Mutation p.P954H 0.31 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 2 26680950 26680950 G A OTOF 3'UTR 0.43 TCGA-VQ-A8P2-01 2 26702239 26702239 G T OTOF Missense_Mutation p.L703M 0.45 tolerated(0.1) possibly_damaging(0.607) TCGA-VQ-A8P2-01 2 26706409 26706409 G A OTOF Missense_Mutation p.A438V 0.38 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 2 26739411 26739411 C A OTOF Missense_Mutation p.W128C 0.33 deleterious(0) possibly_damaging(0.759) TCGA-VQ-A8P2-01 2 27259614 27259614 C T TMEM214 Silent p.L290L 0.45 TCGA-VQ-A8P2-01 2 27278601 27278601 C T AGBL5 Silent p.A320A 0.38 TCGA-VQ-A8P2-01 2 27280180 27280180 T C AGBL5 Silent p.L515L 0.45 TCGA-VQ-A8P2-01 2 27303754 27303754 C T EMILIN1 Nonsense_Mutation p.Q149* 0.60 TCGA-VQ-A8P2-01 2 27427334 27427334 C A SLC5A6 Missense_Mutation p.D334Y 0.39 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 2 27594138 27594138 C A SNX17 Silent p.A22A 0.43 TCGA-VQ-A8P2-01 2 27597031 27597031 G T SNX17 Missense_Mutation p.G171V 0.42 deleterious(0.01) possibly_damaging(0.898) TCGA-VQ-A8P2-01 2 27688353 27688353 G A IFT172 Missense_Mutation p.T621I 0.42 deleterious(0.03) benign(0.123) TCGA-VQ-A8P2-01 2 27746168 27746168 C A GCKR Missense_Mutation p.F580L 0.53 tolerated(0.71) benign(0.001) TCGA-VQ-A8P2-01 2 28210901 28210901 G A BRE Missense_Mutation p.D83N 0.36 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 2 28843197 28843197 G A PLB1 Nonsense_Mutation p.W1127* 0.32 TCGA-VQ-A8P2-01 2 28855877 28855877 G A PLB1 Missense_Mutation p.E1357K 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A8P2-01 2 29225416 29225416 G - FAM179A Frame_Shift_Del p.G149Efs*21 0.23 TCGA-VQ-A8P2-01 2 29274978 29274978 C T FAM179A 3'UTR 0.53 TCGA-VQ-A8P2-01 2 29295109 29295109 G A C2orf71 Silent p.N673N 0.31 TCGA-VQ-A8P2-01 2 29295726 29295726 G A C2orf71 Missense_Mutation p.H468Y 0.37 tolerated(0.85) benign(0.022) TCGA-VQ-A8P2-01 2 30974115 30974115 C A CAPN13 Nonsense_Mutation p.G364* 0.43 TCGA-VQ-A8P2-01 2 31215868 31215868 C T GALNT14 Intron 0.27 TCGA-VQ-A8P2-01 2 31360991 31360991 C T GALNT14 5'UTR 0.36 TCGA-VQ-A8P2-01 2 31457462 31457462 C T EHD3 5'UTR 0.55 TCGA-VQ-A8P2-01 2 31457507 31457507 C T EHD3 Missense_Mutation p.T7M 0.28 tolerated(0.07) benign(0.11) TCGA-VQ-A8P2-01 2 31558801 31558801 A C XDH 3'UTR 0.49 TCGA-VQ-A8P2-01 2 31562462 31562462 G A XDH Missense_Mutation p.R1223C 0.41 deleterious(0.01) benign(0.413) TCGA-VQ-A8P2-01 2 32475090 32475090 C A NLRC4 Missense_Mutation p.D615Y 0.10 deleterious(0) probably_damaging(0.955) TCGA-VQ-A8P2-01 2 32526487 32526487 T C YIPF4 Missense_Mutation p.S174P 0.33 deleterious(0.04) probably_damaging(0.999) TCGA-VQ-A8P2-01 2 32692616 32692616 G A BIRC6 Missense_Mutation p.D1794N 0.41 probably_damaging(0.989) TCGA-VQ-A8P2-01 2 32707504 32707504 G A BIRC6 Missense_Mutation p.S2517N 0.38 possibly_damaging(0.757) TCGA-VQ-A8P2-01 2 32740485 32740485 G A BIRC6 Missense_Mutation p.R3666H 0.33 benign(0.002) TCGA-VQ-A8P2-01 2 32768313 32768313 T C BIRC6 Silent p.S4099S 0.46 TCGA-VQ-A8P2-01 2 32983537 32983537 A G TTC27 Missense_Mutation p.Q544R 0.15 tolerated(0.79) benign(0.001) TCGA-VQ-A8P2-01 2 33012179 33012179 G A TTC27 Missense_Mutation p.R654Q 0.50 tolerated(0.06) probably_damaging(0.918) TCGA-VQ-A8P2-01 2 33246077 33246077 G A LTBP1 Missense_Mutation p.A223T 0.09 tolerated(0.42) benign(0.002) TCGA-VQ-A8P2-01 2 33585767 33585767 G A LTBP1 Silent p.T1368T 0.31 TCGA-VQ-A8P2-01 2 33589323 33589323 C T LTBP1 Silent p.G1480G 0.08 TCGA-VQ-A8P2-01 2 33623444 33623444 C T LTBP1 Silent p.C1666C 0.36 TCGA-VQ-A8P2-01 2 33623576 33623576 C T LTBP1 Silent p.T1710T 0.26 TCGA-VQ-A8P2-01 2 33810140 33810140 G A FAM98A Silent p.G420G 0.43 TCGA-VQ-A8P2-01 2 3481520 3481520 C T TRAPPC12 Nonsense_Mutation p.Q611* 0.20 TCGA-VQ-A8P2-01 2 3660908 3660908 G A COLEC11 Silent p.A60A 0.50 TCGA-VQ-A8P2-01 2 36740781 36740781 C A CRIM1 Missense_Mutation p.S621R 0.46 deleterious(0) probably_damaging(0.993) TCGA-VQ-A8P2-01 2 36740853 36740853 G A CRIM1 Silent p.V645V 0.29 TCGA-VQ-A8P2-01 2 36744660 36744660 G T CRIM1 Missense_Mutation p.Q727H 0.16 deleterious(0.02) probably_damaging(0.996) TCGA-VQ-A8P2-01 2 37126685 37126685 C T STRN Missense_Mutation p.S259N 0.26 tolerated(0.51) benign(0.011) TCGA-VQ-A8P2-01 2 37267549 37267549 G T HEATR5B Missense_Mutation p.P990H 0.42 tolerated(0.18) benign(0.338) TCGA-VQ-A8P2-01 2 37459276 37459276 A G NDUFAF7 Missense_Mutation p.Y28C 0.40 tolerated(0.2) benign(0.001) TCGA-VQ-A8P2-01 2 37468922 37468922 G A NDUFAF7 Missense_Mutation p.D204N 0.34 deleterious(0) probably_damaging(0.979) TCGA-VQ-A8P2-01 2 37474649 37474649 A G NDUFAF7 Silent p.A329A 0.10 TCGA-VQ-A8P2-01 2 38525708 38525708 C A ATL2 Missense_Mutation p.G404W 0.37 deleterious(0) probably_damaging(0.986) TCGA-VQ-A8P2-01 2 38903119 38903119 G T GALM Nonsense_Mutation p.G86* 0.31 TCGA-VQ-A8P2-01 2 38975758 38975758 G A SRSF7 Nonsense_Mutation p.R142* 0.12 TCGA-VQ-A8P2-01 2 39008821 39008821 G T GEMIN6 Missense_Mutation p.E97D 0.30 tolerated(0.09) benign(0.286) TCGA-VQ-A8P2-01 2 39893151 39893151 G A TMEM178A Missense_Mutation p.G13S 0.33 tolerated(1) benign(0) TCGA-VQ-A8P2-01 2 39931241 39931241 G A TMEM178A Missense_Mutation p.A141T 0.32 tolerated(0.31) benign(0.393) TCGA-VQ-A8P2-01 2 39944345 39944345 G A TMEM178A Missense_Mutation p.R283Q 0.36 deleterious(0.02) benign(0.022) TCGA-VQ-A8P2-01 2 43452297 43452297 G A ZFP36L2 Missense_Mutation p.H216Y 0.53 deleterious(0) possibly_damaging(0.728) TCGA-VQ-A8P2-01 2 43778940 43778940 C T THADA Missense_Mutation p.D979N 0.38 deleterious(0) probably_damaging(0.988) TCGA-VQ-A8P2-01 2 43934672 43934672 G A PLEKHH2 Missense_Mutation p.A652T 0.28 deleterious(0) benign(0.129) TCGA-VQ-A8P2-01 2 43986092 43986092 C T PLEKHH2 Missense_Mutation p.A1332V 0.42 tolerated(0.33) benign(0.003) TCGA-VQ-A8P2-01 2 44001263 44001263 G A DYNC2LI1 5'UTR 0.29 TCGA-VQ-A8P2-01 2 44021818 44021818 A G DYNC2LI1 Intron 0.19 TCGA-VQ-A8P2-01 2 44101561 44101561 C T ABCG8 Missense_Mutation p.A476V 0.09 deleterious(0.04) probably_damaging(0.936) TCGA-VQ-A8P2-01 2 44206987 44206987 T C LRPPRC Missense_Mutation p.I149M 0.11 tolerated(0.15) benign(0.271) TCGA-VQ-A8P2-01 2 44428690 44428690 C T PPM1B Missense_Mutation p.R118C 0.40 deleterious(0.01) probably_damaging(0.993) TCGA-VQ-A8P2-01 2 44527136 44527136 G T SLC3A1 Missense_Mutation p.K306N 0.34 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8P2-01 2 44569589 44569589 C T PREPL Missense_Mutation p.R240H 0.41 tolerated(0.78) benign(0.07) TCGA-VQ-A8P2-01 2 45169312 45169312 C T SIX3 Silent p.H23H 0.37 TCGA-VQ-A8P2-01 2 45169648 45169648 C T SIX3 Silent p.R135R 0.18 TCGA-VQ-A8P2-01 2 45233283 45233283 G A SIX2 3'UTR 0.34 TCGA-VQ-A8P2-01 2 45235935 45235935 G A SIX2 Silent p.A105A 0.11 TCGA-VQ-A8P2-01 2 45807020 45807020 C T SRBD1 Missense_Mutation p.V356I 0.23 tolerated(0.17) benign(0.124) TCGA-VQ-A8P2-01 2 45826800 45826800 C A SRBD1 Nonsense_Mutation p.E146* 0.09 TCGA-VQ-A8P2-01 2 46412008 46412008 C A PRKCE Missense_Mutation p.D734E 0.26 tolerated(1) benign(0.047) TCGA-VQ-A8P2-01 2 46607784 46607784 G A EPAS1 Missense_Mutation p.R658H 0.09 tolerated(0.58) benign(0) TCGA-VQ-A8P2-01 2 46815228 46815228 G A PIGF Intron 0.31 TCGA-VQ-A8P2-01 2 47136203 47136203 G A MCFD2 Silent p.P36P 0.34 TCGA-VQ-A8P2-01 2 47205950 47205950 C T TTC7A Missense_Mutation p.S223L 0.29 deleterious(0.02) benign(0.064) TCGA-VQ-A8P2-01 2 47637393 47637393 G A MSH2 Missense_Mutation p.C176Y 0.44 deleterious(0) probably_damaging(0.992) TCGA-VQ-A8P2-01 2 48026004 48026004 C T MSH6 Silent p.V294V 0.37 TCGA-VQ-A8P2-01 2 48707135 48707135 G A PPP1R21 Missense_Mutation p.G433E 0.34 tolerated(0.57) benign(0.11) TCGA-VQ-A8P2-01 2 48738603 48738603 G T PPP1R21 Missense_Mutation p.S770I 0.18 deleterious(0.03) unknown(0) TCGA-VQ-A8P2-01 2 48741873 48741873 A G PPP1R21 Missense_Mutation p.K778R 0.31 tolerated_low_confidence(0.09) unknown(0) TCGA-VQ-A8P2-01 2 48915389 48915389 G A LHCGR Missense_Mutation p.P516L 0.36 deleterious(0) probably_damaging(0.914) TCGA-VQ-A8P2-01 2 48915773 48915773 C T LHCGR Missense_Mutation p.R388H 0.48 tolerated(1) benign(0.014) TCGA-VQ-A8P2-01 2 49190834 49190834 C T FSHR Missense_Mutation p.A376T 0.33 deleterious(0) probably_damaging(0.945) TCGA-VQ-A8P2-01 2 49381495 49381495 C T FSHR Missense_Mutation p.R21Q 0.15 tolerated(0.59) benign(0.001) TCGA-VQ-A8P2-01 2 50170867 50170867 G T NRXN1 Silent p.P1437P 0.36 TCGA-VQ-A8P2-01 2 50780124 50780124 G A NRXN1 Nonsense_Mutation p.R494* 0.40 TCGA-VQ-A8P2-01 2 54001499 54001499 T A CHAC2 Missense_Mutation p.I131N 0.34 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 2 54080409 54080409 G A GPR75 Silent p.S495S 0.47 TCGA-VQ-A8P2-01 2 54133990 54133991 - T PSME4 Frame_Shift_Ins p.Q934Tfs*9 0.27 TCGA-VQ-A8P2-01 2 54159001 54159001 A G PSME4 Silent p.P429P 0.49 TCGA-VQ-A8P2-01 2 54482925 54482925 C T TSPYL6 Missense_Mutation p.G122S 0.33 tolerated(0.32) possibly_damaging(0.494) TCGA-VQ-A8P2-01 2 54872404 54872404 C T SPTBN1 Silent p.I1436I 0.37 TCGA-VQ-A8P2-01 2 54872469 54872469 G T SPTBN1 Missense_Mutation p.S1458I 0.12 tolerated(0.16) possibly_damaging(0.516) TCGA-VQ-A8P2-01 2 54880820 54880820 G A SPTBN1 Silent p.K1884K 0.30 TCGA-VQ-A8P2-01 2 54883115 54883115 G A SPTBN1 Missense_Mutation p.R2009Q 0.39 deleterious(0.01) benign(0.351) TCGA-VQ-A8P2-01 2 54893178 54893178 C T SPTBN1 Silent p.C2262C 0.37 TCGA-VQ-A8P2-01 2 55523066 55523066 G A CCDC88A Missense_Mutation p.P1739S 0.36 tolerated(0.06) benign(0.087) TCGA-VQ-A8P2-01 2 55555447 55555447 G A CCDC88A Missense_Mutation p.R993C 0.29 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 2 55589485 55589485 G A CCDC88A Missense_Mutation p.H196Y 0.17 deleterious(0) possibly_damaging(0.478) TCGA-VQ-A8P2-01 2 56602982 56602982 G A CCDC85A Missense_Mutation p.G495E 0.41 tolerated_low_confidence(0.6) possibly_damaging(0.895) TCGA-VQ-A8P2-01 2 5833169 5833169 C T SOX11 Missense_Mutation p.R106W 0.18 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 2 58390074 58390074 T A FANCL Missense_Mutation p.E282V 0.42 deleterious(0.02) benign(0.031) TCGA-VQ-A8P2-01 2 61009051 61009051 C T PAPOLG Missense_Mutation p.P313L 0.38 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 2 61021113 61021113 C T PAPOLG Silent p.D592D 0.08 TCGA-VQ-A8P2-01 2 61118864 61118864 G A REL Silent p.R19R 0.43 TCGA-VQ-A8P2-01 2 61259027 61259027 G A PEX13 Missense_Mutation p.R189Q 0.44 tolerated(0.06) probably_damaging(0.909) TCGA-VQ-A8P2-01 2 61315298 61315299 - T KIAA1841 Frame_Shift_Ins p.C301Lfs*2 0.25 TCGA-VQ-A8P2-01 2 61416111 61416111 A G USP34 Missense_Mutation p.C3323R 0.38 deleterious(0.02) possibly_damaging(0.51) TCGA-VQ-A8P2-01 2 61468780 61468780 G A USP34 Missense_Mutation p.A2231V 0.29 deleterious(0) probably_damaging(0.986) TCGA-VQ-A8P2-01 2 61577813 61577813 G A USP34 Missense_Mutation p.R423W 0.38 deleterious(0) probably_damaging(0.982) TCGA-VQ-A8P2-01 2 61705986 61705986 G A XPO1 Missense_Mutation p.P1062L 0.47 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 2 61722723 61722723 C T XPO1 Missense_Mutation p.R305Q 0.28 tolerated(0.16) benign(0.008) TCGA-VQ-A8P2-01 2 62099678 62099678 G A CCT4 Missense_Mutation p.R391C 0.29 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 2 62449833 62449833 G A B3GNT2 Missense_Mutation p.A160T 0.40 deleterious(0) probably_damaging(0.951) TCGA-VQ-A8P2-01 2 62450064 62450064 G A B3GNT2 Missense_Mutation p.D237N 0.30 tolerated(0.62) benign(0.003) TCGA-VQ-A8P2-01 2 63092028 63092029 - A EHBP1 Frame_Shift_Ins p.N344Kfs*14 0.27 TCGA-VQ-A8P2-01 2 63175609 63175609 C T EHBP1 Missense_Mutation p.S578F 0.11 deleterious(0) probably_damaging(0.954) TCGA-VQ-A8P2-01 2 63176268 63176268 C T EHBP1 Missense_Mutation p.H798Y 0.45 deleterious_low_confidence(0) benign(0.375) TCGA-VQ-A8P2-01 2 63283453 63283453 C T OTX1 3'UTR 0.28 TCGA-VQ-A8P2-01 2 63711778 63711778 C T WDPCP Missense_Mutation p.R115Q 0.20 tolerated(1) benign(0.001) TCGA-VQ-A8P2-01 2 64331953 64331953 G T PELI1 Missense_Mutation p.S28Y 0.09 tolerated(1) benign(0.208) TCGA-VQ-A8P2-01 2 64863276 64863276 C T SERTAD2 Missense_Mutation p.D244N 0.28 tolerated(0.07) benign(0.134) TCGA-VQ-A8P2-01 2 65248136 65248136 C T SLC1A4 Silent p.G485G 0.26 TCGA-VQ-A8P2-01 2 65540908 65540908 G A SPRED2 Silent p.D328D 0.36 TCGA-VQ-A8P2-01 2 65541234 65541235 GG A SPRED2 Frame_Shift_Del p.R220Gfs*6 0.31 TCGA-VQ-A8P2-01 2 66667071 66667071 C T MEIS1 Silent p.C112C 0.33 TCGA-VQ-A8P2-01 2 669511 669511 G A TMEM18 3'UTR 0.35 TCGA-VQ-A8P2-01 2 68607594 68607594 T C PLEK Silent p.C59C 0.39 TCGA-VQ-A8P2-01 2 68691329 68691329 T - FBXO48 3'UTR 0.37 TCGA-VQ-A8P2-01 2 68882145 68882145 G A PROKR1 Missense_Mutation p.V207I 0.38 tolerated(0.4) benign(0.003) TCGA-VQ-A8P2-01 2 69014995 69014995 G A ARHGAP25 Missense_Mutation p.G125R 0.09 deleterious(0.02) probably_damaging(0.934) TCGA-VQ-A8P2-01 2 69049478 69049478 G A ARHGAP25 Missense_Mutation p.D403N 0.09 tolerated(0.21) benign(0.016) TCGA-VQ-A8P2-01 2 69177312 69177312 G T GKN2 Silent p.I50I 0.50 TCGA-VQ-A8P2-01 2 69207872 69207872 T - GKN1 Frame_Shift_Del p.Y175Tfs*38 0.30 TCGA-VQ-A8P2-01 2 69757767 69757767 G A AAK1 Missense_Mutation p.A243V 0.16 deleterious(0.01) unknown(0) TCGA-VQ-A8P2-01 2 70123578 70123578 C T SNRNP27 Nonsense_Mutation p.R56* 0.20 TCGA-VQ-A8P2-01 2 70188262 70188262 C T ASPRV1 Missense_Mutation p.V187I 0.41 tolerated(0.27) benign(0.007) TCGA-VQ-A8P2-01 2 70486681 70486681 G A PCYOX1 Missense_Mutation p.R101H 0.38 tolerated(0.47) benign(0.021) TCGA-VQ-A8P2-01 2 70520818 70520818 G A SNRPG 5'UTR 0.39 TCGA-VQ-A8P2-01 2 70890670 70890670 C T ADD2 Missense_Mutation p.G690S 0.43 tolerated(0.3) unknown(0) TCGA-VQ-A8P2-01 2 71215753 71215753 G A TEX261 Missense_Mutation p.P190S 0.45 deleterious(0.01) probably_damaging(0.996) TCGA-VQ-A8P2-01 2 7137148 7137148 C T RNF144A Nonsense_Mutation p.Q31* 0.38 TCGA-VQ-A8P2-01 2 71576270 71576270 G T ZNF638 Missense_Mutation p.Q62H 0.06 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 2 71730446 71730446 A G DYSF Silent p.T114T 0.45 TCGA-VQ-A8P2-01 2 71797818 71797818 C T DYSF Missense_Mutation p.R1059C 0.46 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 2 71817362 71817362 G A DYSF Missense_Mutation p.R1173H 0.32 deleterious(0.02) probably_damaging(0.93) TCGA-VQ-A8P2-01 2 71892324 71892324 G A DYSF Missense_Mutation p.R1736H 0.36 deleterious(0.02) benign(0.008) TCGA-VQ-A8P2-01 2 71913588 71913588 A G DYSF Missense_Mutation p.Y2109C 0.08 deleterious(0) probably_damaging(0.959) TCGA-VQ-A8P2-01 2 72945272 72945272 C T EXOC6B Missense_Mutation p.R210H 0.16 deleterious(0.04) probably_damaging(0.996) TCGA-VQ-A8P2-01 2 73188351 73188351 C T SFXN5 Missense_Mutation p.R285Q 0.33 deleterious(0.02) probably_damaging(0.921) TCGA-VQ-A8P2-01 2 73449939 73449939 C T SMYD5 Silent p.V233V 0.50 TCGA-VQ-A8P2-01 2 73679902 73679902 T C ALMS1 Missense_Mutation p.V2082A 0.40 benign(0.259) TCGA-VQ-A8P2-01 2 73746997 73746997 C T ALMS1 Missense_Mutation p.T3211I 0.24 probably_damaging(0.95) TCGA-VQ-A8P2-01 2 73961664 73961664 G A TPRKB Silent p.P11P 0.40 TCGA-VQ-A8P2-01 2 74174018 74174018 C A DGUOK Missense_Mutation p.S143Y 0.45 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 2 74307672 74307672 C T TET3 Missense_Mutation p.T743M 0.40 deleterious(0) probably_damaging(0.993) TCGA-VQ-A8P2-01 2 74329082 74329082 C T TET3 Missense_Mutation p.R1588W 0.44 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 2 74649301 74649301 C A WDR54 Silent p.S7S 0.32 TCGA-VQ-A8P2-01 2 74653513 74653513 G A RTKN Nonsense_Mutation p.R517* 0.35 TCGA-VQ-A8P2-01 2 74657796 74657796 T C RTKN Missense_Mutation p.D107G 0.16 tolerated(0.06) benign(0.001) TCGA-VQ-A8P2-01 2 74746811 74746811 G A DQX1 Missense_Mutation p.H560Y 0.27 deleterious(0.03) benign(0.002) TCGA-VQ-A8P2-01 2 74749796 74749796 G A DQX1 Missense_Mutation p.P469L 0.50 deleterious(0.01) probably_damaging(0.943) TCGA-VQ-A8P2-01 2 74751297 74751297 C A DQX1 Missense_Mutation p.R190M 0.34 tolerated(0.1) benign(0.047) TCGA-VQ-A8P2-01 2 74752201 74752201 G A DQX1 Silent p.T122T 0.41 TCGA-VQ-A8P2-01 2 74755134 74755134 C A AUP1 Splice_Site p.X224_splice 0.42 TCGA-VQ-A8P2-01 2 75921499 75921499 G A GCFC2 Silent p.Y296Y 0.55 TCGA-VQ-A8P2-01 2 75929495 75929495 G A GCFC2 Missense_Mutation p.A150V 0.38 deleterious(0) possibly_damaging(0.624) TCGA-VQ-A8P2-01 2 75937947 75937947 C T GCFC2 Missense_Mutation p.R12H 0.31 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 2 76975804 76975804 A C LRRTM4 3'UTR 0.22 TCGA-VQ-A8P2-01 2 77746525 77746525 C T LRRTM4 Missense_Mutation p.R157Q 0.30 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 2 79364368 79364368 C A REG1P RNA 0.21 TCGA-VQ-A8P2-01 2 80529385 80529385 G A LRRTM1 Silent p.C520C 0.39 TCGA-VQ-A8P2-01 2 84804389 84804389 T - DNAH6 Frame_Shift_Del p.F646Lfs*16 0.33 TCGA-VQ-A8P2-01 2 85051152 85051152 C T TRABD2A Missense_Mutation p.R371Q 0.50 tolerated(0.07) benign(0.002) TCGA-VQ-A8P2-01 2 85536253 85536253 C A TCF7L1 Missense_Mutation p.P479T 0.46 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 2 85617618 85617618 C A ELMOD3 Missense_Mutation p.F391L 0.39 deleterious_low_confidence(0) benign(0.294) TCGA-VQ-A8P2-01 2 85782690 85782690 C T GGCX Silent p.A214A 0.36 TCGA-VQ-A8P2-01 2 85836054 85836054 C T C2orf68 3'UTR 0.40 TCGA-VQ-A8P2-01 2 86073608 86073608 G A ST3GAL5 Silent p.G247G 0.13 TCGA-VQ-A8P2-01 2 86257416 86257416 C T POLR1A Missense_Mutation p.R1561Q 0.35 tolerated(0.05) probably_damaging(0.986) TCGA-VQ-A8P2-01 2 86271402 86271402 G T POLR1A Missense_Mutation p.L999M 0.41 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 2 86434390 86434390 C T MRPL35 Silent p.T106T 0.10 TCGA-VQ-A8P2-01 2 86481834 86481834 G A REEP1 Silent p.L103L 0.12 TCGA-VQ-A8P2-01 2 86697398 86697398 G A KDM3A Missense_Mutation p.V531I 0.11 deleterious(0.01) probably_damaging(0.99) TCGA-VQ-A8P2-01 2 86697456 86697456 G A KDM3A Missense_Mutation p.R550H 0.08 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 2 86716693 86716693 C T KDM3A Nonsense_Mutation p.R1162* 0.49 TCGA-VQ-A8P2-01 2 8871792 8871792 G A KIDINS220 Silent p.I1458I 0.32 TCGA-VQ-A8P2-01 2 88751431 88751431 G T FOXI3 RNA 0.33 TCGA-VQ-A8P2-01 2 88888367 88888368 - T EIF2AK3 Frame_Shift_Ins p.F407Vfs*13 0.33 TCGA-VQ-A8P2-01 2 8890291 8890291 C A KIDINS220 Missense_Mutation p.S1122I 0.12 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 2 88926573 88926573 C A EIF2AK3 Missense_Mutation p.D74Y 0.31 deleterious(0) unknown(0) TCGA-VQ-A8P2-01 2 89197089 89197089 C T IGKV5-2 Missense_Mutation p.A45V 0.10 deleterious(0.01) possibly_damaging(0.569) TCGA-VQ-A8P2-01 2 89326882 89326882 C A IGKV3-11 Missense_Mutation p.R44M 0.32 deleterious(0.01) benign(0.093) TCGA-VQ-A8P2-01 2 89619838 89619838 G A IGKV1-39 Missense_Mutation p.A7V 0.47 tolerated(0.14) benign(0.011) TCGA-VQ-A8P2-01 2 8998938 8998938 A G MBOAT2 Silent p.I478I 0.52 TCGA-VQ-A8P2-01 2 9547066 9547066 C T ITGB1BP1 Intron 0.47 TCGA-VQ-A8P2-01 2 95540715 95540715 G A TEKT4 Missense_Mutation p.R303Q 0.36 deleterious(0.02) benign(0.075) TCGA-VQ-A8P2-01 2 95845958 95845958 C T ZNF2 Missense_Mutation p.P72L 0.23 deleterious(0.03) benign(0.418) TCGA-VQ-A8P2-01 2 95976161 95976161 G A KCNIP3 Missense_Mutation p.S25N 0.39 tolerated_low_confidence(0.25) benign(0.001) TCGA-VQ-A8P2-01 2 96078496 96078496 C A FAHD2A Missense_Mutation p.P289H 0.44 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8P2-01 2 96795839 96795839 G A ASTL Missense_Mutation p.T228M 0.33 tolerated(0.05) benign(0.066) TCGA-VQ-A8P2-01 2 96798441 96798441 G A ASTL Missense_Mutation p.R159C 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-VQ-A8P2-01 2 96957209 96957209 C T SNRNP200 Missense_Mutation p.G781D 0.42 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 2 96963157 96963157 C T SNRNP200 Missense_Mutation p.G441S 0.35 tolerated(0.05) possibly_damaging(0.45) TCGA-VQ-A8P2-01 2 97007481 97007481 A C NCAPH Missense_Mutation p.K41Q 0.31 tolerated(0.14) benign(0.196) TCGA-VQ-A8P2-01 2 97024827 97024827 G A NCAPH Missense_Mutation p.C418Y 0.28 deleterious(0) probably_damaging(0.989) TCGA-VQ-A8P2-01 2 97215062 97215062 C A ARID5A Missense_Mutation p.S42Y 0.31 deleterious(0) possibly_damaging(0.838) TCGA-VQ-A8P2-01 2 9731522 9731522 T C YWHAQ Silent p.K139K 0.26 TCGA-VQ-A8P2-01 2 9731617 9731617 T C YWHAQ Missense_Mutation p.N108D 0.34 deleterious_low_confidence(0.04) benign(0.158) TCGA-VQ-A8P2-01 2 97427780 97427780 G A CNNM4 Silent p.T348T 0.44 TCGA-VQ-A8P2-01 2 97506561 97506561 T C ANKRD23 Missense_Mutation p.Y130C 0.50 deleterious(0) probably_damaging(0.984) TCGA-VQ-A8P2-01 2 97526392 97526392 C T SEMA4C Missense_Mutation p.D825N 0.24 deleterious(0.03) probably_damaging(0.998) TCGA-VQ-A8P2-01 2 97559751 97559751 G A FAM178B Missense_Mutation p.P563L 0.64 deleterious(0.05) possibly_damaging(0.589) TCGA-VQ-A8P2-01 2 97749465 97749465 T C FAHD2B 3'UTR 0.16 TCGA-VQ-A8P2-01 2 97757221 97757221 C T FAHD2B Missense_Mutation p.A75T 0.24 tolerated(0.55) benign(0.001) TCGA-VQ-A8P2-01 2 97784149 97784149 G A ANKRD36 Silent p.T127T 0.25 TCGA-VQ-A8P2-01 2 98275398 98275398 G T ACTR1B Missense_Mutation p.F128L 0.07 tolerated(0.33) benign(0.181) TCGA-VQ-A8P2-01 2 99155995 99155995 C T INPP4A Silent p.F225F 0.15 TCGA-VQ-A8P2-01 2 99170940 99170940 C T INPP4A Silent p.H523H 0.70 TCGA-VQ-A8P2-01 2 99788039 99788039 G A MITD1 Silent p.R108R 0.39 TCGA-VQ-A8P2-01 2 99860493 99860493 G T LYG2 Missense_Mutation p.F163L 0.08 deleterious(0.02) benign(0.252) TCGA-VQ-A8P2-01 2 9991740 9991740 G T TAF1B Missense_Mutation p.K92N 0.08 tolerated(0.31) benign(0.209) TCGA-VQ-A8P2-01 3 10011466 10011466 C T EMC3 Missense_Mutation p.M198I 0.39 tolerated(0.7) benign(0) TCGA-VQ-A8P2-01 3 100348464 100348464 C T GPR128 Silent p.S46S 0.39 TCGA-VQ-A8P2-01 3 10049190 10049191 - T AC022007.5 RNA 0.32 TCGA-VQ-A8P2-01 3 100945808 100945808 T G IMPG2 3'UTR 0.39 TCGA-VQ-A8P2-01 3 101136598 101136598 C T SENP7 Silent p.T107T 0.30 TCGA-VQ-A8P2-01 3 10114614 10114614 C T FANCD2 Missense_Mutation p.P852S 0.28 deleterious(0.02) benign(0.168) TCGA-VQ-A8P2-01 3 101374980 101374980 C T ZBTB11 Missense_Mutation p.R720Q 0.41 tolerated(0.07) probably_damaging(0.999) TCGA-VQ-A8P2-01 3 101484233 101484233 G A CEP97 Silent p.L812L 0.37 TCGA-VQ-A8P2-01 3 101572369 101572369 G A NFKBIZ Silent p.Q333Q 0.43 TCGA-VQ-A8P2-01 3 10191620 10191620 C T VHL Missense_Mutation p.R205C 0.32 deleterious(0.01) possibly_damaging(0.646) TCGA-VQ-A8P2-01 3 10268066 10268066 G T IRAK2 Missense_Mutation p.E407D 0.44 deleterious(0.01) probably_damaging(0.96) TCGA-VQ-A8P2-01 3 10280464 10280464 G A IRAK2 Silent p.R502R 0.33 TCGA-VQ-A8P2-01 3 10280583 10280583 C T IRAK2 Missense_Mutation p.S542F 0.12 deleterious(0.04) possibly_damaging(0.494) TCGA-VQ-A8P2-01 3 10302006 10302006 A - TATDN2 Frame_Shift_Del p.R202Gfs*74 0.27 TCGA-VQ-A8P2-01 3 10320693 10320693 G A TATDN2 Missense_Mutation p.R757H 0.39 tolerated(0.2) benign(0.022) TCGA-VQ-A8P2-01 3 10342782 10342782 C T SEC13 3'UTR 0.42 TCGA-VQ-A8P2-01 3 10342886 10342886 G T SEC13 3'UTR 0.38 TCGA-VQ-A8P2-01 3 10370789 10370789 G T ATP2B2 Missense_Mutation p.F1147L 0.13 deleterious(0) probably_damaging(0.994) TCGA-VQ-A8P2-01 3 107096978 107096978 A G CCDC54 Missense_Mutation p.T182A 0.32 tolerated(0.13) benign(0.027) TCGA-VQ-A8P2-01 3 108388553 108388553 G T DZIP3 Missense_Mutation p.D817Y 0.32 deleterious(0) possibly_damaging(0.838) TCGA-VQ-A8P2-01 3 108541639 108541639 G T TRAT1 5'UTR 0.63 TCGA-VQ-A8P2-01 3 108776287 108776287 C T MORC1 Missense_Mutation p.V360I 0.46 tolerated(1) benign(0.001) TCGA-VQ-A8P2-01 3 109052730 109052730 G A DPPA4 Silent p.I55I 0.29 TCGA-VQ-A8P2-01 3 111700731 111700731 C T ABHD10 Silent p.I81I 0.46 TCGA-VQ-A8P2-01 3 111710525 111710525 C T ABHD10 Missense_Mutation p.T293I 0.09 deleterious(0) probably_damaging(0.978) TCGA-VQ-A8P2-01 3 111766777 111766777 G A TMPRSS7 Missense_Mutation p.D182N 0.29 tolerated(0.35) probably_damaging(1) TCGA-VQ-A8P2-01 3 111985117 111985117 A - SLC9C1 Frame_Shift_Del p.F282Lfs*32 0.21 TCGA-VQ-A8P2-01 3 112064074 112064074 G A CD200 Missense_Mutation p.M145I 0.33 tolerated(0.17) benign(0.017) TCGA-VQ-A8P2-01 3 112185146 112185146 C T BTLA Missense_Mutation p.D227N 0.31 deleterious(0.03) possibly_damaging(0.788) TCGA-VQ-A8P2-01 3 112349093 112349093 C T CCDC80 Silent p.E634E 0.39 TCGA-VQ-A8P2-01 3 112357946 112357946 G A CCDC80 Silent p.I269I 0.38 TCGA-VQ-A8P2-01 3 113321886 113321886 C A SIDT1 Silent p.S384S 0.41 TCGA-VQ-A8P2-01 3 113345005 113345005 C T SIDT1 Silent p.F788F 0.13 TCGA-VQ-A8P2-01 3 113346584 113346584 C T SIDT1 3'UTR 0.30 TCGA-VQ-A8P2-01 3 113374108 113374108 C A KIAA2018 Nonsense_Mutation p.E2141* 0.10 TCGA-VQ-A8P2-01 3 113375488 113375488 A C KIAA2018 Missense_Mutation p.S1681A 0.35 probably_damaging(0.99) TCGA-VQ-A8P2-01 3 113378571 113378572 - A KIAA2018 Frame_Shift_Ins p.S653Ffs*80 0.21 TCGA-VQ-A8P2-01 3 11340892 11340892 T C ATG7 Splice_Site p.X72_splice 0.38 TCGA-VQ-A8P2-01 3 113442284 113442284 G A NAA50 Nonsense_Mutation p.R84* 0.29 TCGA-VQ-A8P2-01 3 11348419 11348419 G A ATG7 Missense_Mutation p.S73N 0.28 tolerated(0.74) benign(0) TCGA-VQ-A8P2-01 3 113563489 113563489 G A GRAMD1C Missense_Mutation p.S56N 0.36 tolerated_low_confidence(0.22) benign(0.004) TCGA-VQ-A8P2-01 3 113588411 113588411 C A GRAMD1C Missense_Mutation p.L78I 0.44 deleterious(0.03) benign(0.255) TCGA-VQ-A8P2-01 3 113658819 113658819 G A GRAMD1C Missense_Mutation p.R593H 0.30 tolerated(0.53) benign(0) TCGA-VQ-A8P2-01 3 113684127 113684127 G A KIAA1407 Nonsense_Mutation p.R896* 0.38 TCGA-VQ-A8P2-01 3 113772456 113772456 T C KIAA1407 Silent p.E39E 0.44 TCGA-VQ-A8P2-01 3 113775222 113775222 A G KIAA1407 Splice_Site p.X30_splice 0.25 TCGA-VQ-A8P2-01 3 113850002 113850002 C T DRD3 Silent p.R323R 0.06 TCGA-VQ-A8P2-01 3 114069326 114069326 T C ZBTB20 Silent p.A533A 0.45 TCGA-VQ-A8P2-01 3 114069920 114069920 G A ZBTB20 Silent p.D335D 0.34 TCGA-VQ-A8P2-01 3 114070632 114070632 C T ZBTB20 Missense_Mutation p.R98H 0.43 deleterious(0) probably_damaging(0.991) TCGA-VQ-A8P2-01 3 115560739 115560739 A G LSAMP Missense_Mutation p.V291A 0.13 deleterious(0) probably_damaging(0.973) TCGA-VQ-A8P2-01 3 118621372 118621372 C T IGSF11 Missense_Mutation p.V431I 0.10 deleterious(0) probably_damaging(0.994) TCGA-VQ-A8P2-01 3 118922829 118922829 C T UPK1B 3'UTR 0.31 TCGA-VQ-A8P2-01 3 119109743 119109743 G A ARHGAP31 Missense_Mutation p.R265H 0.35 tolerated(0.2) possibly_damaging(0.717) TCGA-VQ-A8P2-01 3 119120904 119120904 C T ARHGAP31 Silent p.F435F 0.44 TCGA-VQ-A8P2-01 3 119133842 119133842 G T ARHGAP31 Missense_Mutation p.Q1022H 0.22 tolerated(0.14) possibly_damaging(0.728) TCGA-VQ-A8P2-01 3 119171365 119171365 T C TMEM39A Missense_Mutation p.I117V 0.32 deleterious(0.01) benign(0.235) TCGA-VQ-A8P2-01 3 119211360 119211360 C T POGLUT1 3'UTR 0.35 TCGA-VQ-A8P2-01 3 119459417 119459417 C T MAATS1 Nonsense_Mutation p.R519* 0.43 TCGA-VQ-A8P2-01 3 119533911 119533911 G A NR1I2 Missense_Mutation p.A333T 0.41 tolerated(0.6) benign(0.068) TCGA-VQ-A8P2-01 3 119885972 119885972 C A GPR156 Missense_Mutation p.E784D 0.11 deleterious(0.04) benign(0.008) TCGA-VQ-A8P2-01 3 119886076 119886076 T C GPR156 Missense_Mutation p.S750G 0.43 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 3 120973887 120973887 C A STXBP5L Missense_Mutation p.F529L 0.40 tolerated(1) benign(0.029) TCGA-VQ-A8P2-01 3 121001169 121001169 C T STXBP5L Missense_Mutation p.R723C 0.30 tolerated(0.08) possibly_damaging(0.708) TCGA-VQ-A8P2-01 3 121126431 121126431 G A STXBP5L Missense_Mutation p.G1001R 0.24 deleterious(0) probably_damaging(0.988) TCGA-VQ-A8P2-01 3 121212534 121212534 C T POLQ Nonsense_Mutation p.W771* 0.42 TCGA-VQ-A8P2-01 3 121240918 121240918 C T POLQ Missense_Mutation p.R396H 0.36 tolerated(0.09) benign(0.041) TCGA-VQ-A8P2-01 3 121258349 121258349 C T POLQ Missense_Mutation p.V188I 0.42 deleterious(0.05) possibly_damaging(0.558) TCGA-VQ-A8P2-01 3 121341975 121341975 G A FBXO40 Missense_Mutation p.G567R 0.41 tolerated(0.34) benign(0.037) TCGA-VQ-A8P2-01 3 121410125 121410125 C T GOLGB1 Missense_Mutation p.A2696T 0.36 probably_damaging(0.966) TCGA-VQ-A8P2-01 3 121410230 121410230 C T GOLGB1 Missense_Mutation p.A2661T 0.33 benign(0.002) TCGA-VQ-A8P2-01 3 121412998 121412999 - T GOLGB1 Frame_Shift_Ins p.D2125Gfs*2 0.33 TCGA-VQ-A8P2-01 3 121421423 121421423 A G GOLGB1 Missense_Mutation p.I475T 0.43 benign(0.012) TCGA-VQ-A8P2-01 3 121591586 121591586 C T EAF2 Silent p.A229A 0.34 TCGA-VQ-A8P2-01 3 121707172 121707172 G A ILDR1 3'UTR 0.38 TCGA-VQ-A8P2-01 3 121838357 121838357 C T CD86 Silent p.C322C 0.26 TCGA-VQ-A8P2-01 3 121980439 121980439 C T CASR Missense_Mutation p.T186I 0.11 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 3 121994822 121994822 A G CASR Missense_Mutation p.Y514C 0.39 tolerated(0.09) benign(0.438) TCGA-VQ-A8P2-01 3 122002808 122002808 C T CASR Silent p.I679I 0.42 TCGA-VQ-A8P2-01 3 122418631 122418631 G T PARP14 Missense_Mutation p.W410C 0.31 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 3 122419200 122419200 G A PARP14 Missense_Mutation p.R600H 0.32 tolerated(0.57) benign(0.004) TCGA-VQ-A8P2-01 3 122628984 122628984 G A SEMA5B 3'UTR 0.44 TCGA-VQ-A8P2-01 3 122631117 122631117 C T SEMA5B Missense_Mutation p.R987H 0.46 deleterious(0) probably_damaging(0.955) TCGA-VQ-A8P2-01 3 122990590 122990590 G C SEC22A 3'UTR 0.38 TCGA-VQ-A8P2-01 3 123005630 123005630 C T ADCY5 Missense_Mutation p.G1187R 0.17 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 3 123039615 123039615 A C ADCY5 Missense_Mutation p.F698V 0.31 tolerated(0.08) benign(0.159) TCGA-VQ-A8P2-01 3 123066664 123066664 G A ADCY5 Silent p.F457F 0.08 TCGA-VQ-A8P2-01 3 123444811 123444811 C T MYLK Missense_Mutation p.R544Q 0.42 tolerated(1) benign(0.013) TCGA-VQ-A8P2-01 3 123694251 123694251 G A ROPN1 Missense_Mutation p.A124V 0.36 deleterious(0) probably_damaging(0.994) TCGA-VQ-A8P2-01 3 124132391 124132391 C T KALRN Silent p.T805T 0.50 TCGA-VQ-A8P2-01 3 124281826 124281826 G A KALRN Missense_Mutation p.R62H 0.42 deleterious(0) probably_damaging(0.987) TCGA-VQ-A8P2-01 3 124374493 124374493 G T KALRN Missense_Mutation p.K38N 0.36 tolerated(0.21) probably_damaging(0.917) TCGA-VQ-A8P2-01 3 124385391 124385391 C T KALRN Silent p.R238R 0.35 TCGA-VQ-A8P2-01 3 124632510 124632510 T C MUC13 Missense_Mutation p.Y327C 0.09 deleterious(0) probably_damaging(0.969) TCGA-VQ-A8P2-01 3 124721140 124721140 G A HEG1 Missense_Mutation p.A1106V 0.34 tolerated(0.1) benign(0.004) TCGA-VQ-A8P2-01 3 124896755 124896755 C T SLC12A8 Missense_Mutation p.G152R 0.46 tolerated(0.61) benign(0.002) TCGA-VQ-A8P2-01 3 124952476 124952476 G A ZNF148 Missense_Mutation p.A365V 0.12 deleterious(0.01) possibly_damaging(0.477) TCGA-VQ-A8P2-01 3 125032472 125032472 C T ZNF148 Missense_Mutation p.D5N 0.38 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 3 125279240 125279240 C T OSBPL11 Missense_Mutation p.G380S 0.35 deleterious(0) probably_damaging(0.986) TCGA-VQ-A8P2-01 3 125313526 125313526 C T OSBPL11 Missense_Mutation p.S40N 0.27 tolerated_low_confidence(0.21) benign(0.025) TCGA-VQ-A8P2-01 3 125775344 125775344 G A SLC41A3 Intron 0.38 TCGA-VQ-A8P2-01 3 126071237 126071237 G A KLF15 Missense_Mutation p.P177S 0.41 tolerated(0.42) benign(0.003) TCGA-VQ-A8P2-01 3 126138522 126138522 C A CCDC37 Silent p.V258V 0.43 TCGA-VQ-A8P2-01 3 126153224 126153224 G T CCDC37 Missense_Mutation p.R543I 0.11 deleterious(0) possibly_damaging(0.813) TCGA-VQ-A8P2-01 3 126707727 126707727 G A PLXNA1 Silent p.P97P 0.47 TCGA-VQ-A8P2-01 3 126737281 126737281 C T PLXNA1 Missense_Mutation p.R1269C 0.44 deleterious(0) probably_damaging(0.964) TCGA-VQ-A8P2-01 3 126737303 126737303 G A PLXNA1 Missense_Mutation p.R1276H 0.39 deleterious(0.01) probably_damaging(0.998) TCGA-VQ-A8P2-01 3 127292276 127292276 G A TPRA1 3'UTR 0.50 TCGA-VQ-A8P2-01 3 127292390 127292390 C T TPRA1 Missense_Mutation p.E366K 0.44 tolerated_low_confidence(0.09) benign(0.085) TCGA-VQ-A8P2-01 3 127441312 127441312 G A MGLL Silent p.D120D 0.45 TCGA-VQ-A8P2-01 3 127642706 127642706 C T KBTBD12 Missense_Mutation p.R268C 0.07 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 3 127682215 127682215 G A KBTBD12 Missense_Mutation p.G559E 0.41 tolerated(0.2) probably_damaging(0.99) TCGA-VQ-A8P2-01 3 127842522 127842522 C T RUVBL1 Missense_Mutation p.A16T 0.48 deleterious(0.01) possibly_damaging(0.638) TCGA-VQ-A8P2-01 3 128182136 128182136 C T DNAJB8 5'UTR 0.50 TCGA-VQ-A8P2-01 3 128200153 128200153 C T GATA2 Silent p.R384R 0.42 TCGA-VQ-A8P2-01 3 128204714 128204714 G A GATA2 Missense_Mutation p.H243Y 0.31 deleterious(0.04) possibly_damaging(0.885) TCGA-VQ-A8P2-01 3 128341190 128341190 G A RPN1 Silent p.V486V 0.38 TCGA-VQ-A8P2-01 3 129280710 129280710 C T PLXND1 Missense_Mutation p.R1621Q 0.16 tolerated(0.34) benign(0.319) TCGA-VQ-A8P2-01 3 129308208 129308208 C T PLXND1 Missense_Mutation p.G492R 0.23 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8P2-01 3 12944317 12944317 G A IQSEC1 Nonsense_Mutation p.R935* 0.42 TCGA-VQ-A8P2-01 3 12977264 12977264 G - IQSEC1 Frame_Shift_Del p.R432Gfs*101 0.29 TCGA-VQ-A8P2-01 3 130283918 130283918 C T COL6A6 Missense_Mutation p.L248F 0.18 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 3 130377599 130377599 G A COL6A6 Missense_Mutation p.R1938Q 0.36 tolerated(0.28) benign(0.228) TCGA-VQ-A8P2-01 3 130650912 130650912 G A ATP2C1 Missense_Mutation p.R89Q 0.51 tolerated(0.18) benign(0.065) TCGA-VQ-A8P2-01 3 130683835 130683835 G A ATP2C1 Silent p.T390T 0.39 TCGA-VQ-A8P2-01 3 130688241 130688241 G A ATP2C1 Splice_Site p.X505_splice 0.13 TCGA-VQ-A8P2-01 3 130716497 130716497 G A ATP2C1 Missense_Mutation p.R798H 0.36 deleterious(0) probably_damaging(0.961) TCGA-VQ-A8P2-01 3 131624129 131624129 C A CPNE4 Missense_Mutation p.Q53H 0.06 tolerated(0.11) possibly_damaging(0.876) TCGA-VQ-A8P2-01 3 132036225 132036225 A G ACPP 5'Flank 0.36 TCGA-VQ-A8P2-01 3 132050502 132050502 G T ACPP Missense_Mutation p.E76D 0.22 deleterious(0.02) benign(0.067) TCGA-VQ-A8P2-01 3 132358374 132358374 C A ACAD11 Missense_Mutation p.D222Y 0.46 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 3 133118994 133118994 C T BFSP2 Missense_Mutation p.R23C 0.40 deleterious(0.04) benign(0.002) TCGA-VQ-A8P2-01 3 133119257 133119257 C T BFSP2 Silent p.D110D 0.10 TCGA-VQ-A8P2-01 3 133375669 133375669 G A TOPBP1 Silent p.G132G 0.30 TCGA-VQ-A8P2-01 3 133495910 133495910 C T TF Silent p.N630N 0.12 TCGA-VQ-A8P2-01 3 13364838 13364838 G T NUP210 Missense_Mutation p.A1580D 0.29 deleterious(0.01) benign(0.028) TCGA-VQ-A8P2-01 3 133673820 133673820 G T SLCO2A1 Silent p.P205P 0.14 TCGA-VQ-A8P2-01 3 13377111 13377111 G A NUP210 Missense_Mutation p.A1229V 0.35 tolerated(0.69) benign(0.028) TCGA-VQ-A8P2-01 3 13383524 13383524 G A NUP210 Nonsense_Mutation p.R1022* 0.38 TCGA-VQ-A8P2-01 3 13401899 13401899 C T NUP210 Silent p.P675P 0.24 TCGA-VQ-A8P2-01 3 134079236 134079236 C A AMOTL2 Missense_Mutation p.G532V 0.29 deleterious(0.03) benign(0.06) TCGA-VQ-A8P2-01 3 134090209 134090209 C T AMOTL2 Missense_Mutation p.G23S 0.38 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 3 13415339 13415339 G A NUP210 Missense_Mutation p.S489L 0.43 deleterious(0) possibly_damaging(0.631) TCGA-VQ-A8P2-01 3 134201653 134201653 G A ANAPC13 Missense_Mutation p.P32S 0.45 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 3 134322426 134322426 G A KY Nonsense_Mutation p.Q661* 0.27 TCGA-VQ-A8P2-01 3 134322434 134322434 A G KY Missense_Mutation p.V658A 0.28 deleterious(0) probably_damaging(0.991) TCGA-VQ-A8P2-01 3 134338075 134338075 G A KY Missense_Mutation p.R209C 0.40 deleterious(0.05) benign(0.003) TCGA-VQ-A8P2-01 3 134346625 134346625 G A KY Missense_Mutation p.R125W 0.47 deleterious(0.01) possibly_damaging(0.785) TCGA-VQ-A8P2-01 3 134369834 134369834 G A KY 5'UTR 0.57 TCGA-VQ-A8P2-01 3 13538295 13538295 C A HDAC11 Missense_Mutation p.F104L 0.39 tolerated(0.29) benign(0.042) TCGA-VQ-A8P2-01 3 13546127 13546127 C T HDAC11 Missense_Mutation p.P330S 0.26 tolerated_low_confidence(0.57) benign(0.001) TCGA-VQ-A8P2-01 3 13612910 13612910 G A FBLN2 Missense_Mutation p.G352E 0.55 tolerated(0.55) benign(0.03) TCGA-VQ-A8P2-01 3 136191292 136191292 C T STAG1 Missense_Mutation p.A390T 0.33 deleterious(0.02) probably_damaging(0.983) TCGA-VQ-A8P2-01 3 13659599 13659599 C T FBLN2 Nonsense_Mutation p.R585* 0.38 TCGA-VQ-A8P2-01 3 136664515 136664515 A C NCK1 Missense_Mutation p.D106A 0.40 deleterious(0.02) probably_damaging(1) TCGA-VQ-A8P2-01 3 137483758 137483758 C T SOX14 Silent p.A44A 0.38 TCGA-VQ-A8P2-01 3 137786533 137786533 C T DZIP1L Silent p.P614P 0.45 TCGA-VQ-A8P2-01 3 137813768 137813768 T G DZIP1L Missense_Mutation p.K215T 0.33 deleterious(0) benign(0.093) TCGA-VQ-A8P2-01 3 137907315 137907315 C A ARMC8 5'UTR 0.13 TCGA-VQ-A8P2-01 3 138187556 138187556 G A ESYT3 Silent p.L456L 0.06 TCGA-VQ-A8P2-01 3 138192459 138192459 G A ESYT3 Silent p.V773V 0.13 TCGA-VQ-A8P2-01 3 138664546 138664546 G A FOXL2 Missense_Mutation p.A340V 0.30 deleterious_low_confidence(0) unknown(0) TCGA-VQ-A8P2-01 3 138738769 138738769 G A PRR23B Silent p.H245H 0.45 TCGA-VQ-A8P2-01 3 138739177 138739177 G A PRR23B Silent p.D109D 0.38 TCGA-VQ-A8P2-01 3 13896274 13896274 C T WNT7A Missense_Mutation p.A109T 0.33 deleterious(0.04) possibly_damaging(0.868) TCGA-VQ-A8P2-01 3 13921314 13921314 A G WNT7A 5'UTR 0.44 TCGA-VQ-A8P2-01 3 141164860 141164860 T - ZBTB38 3'UTR 0.21 TCGA-VQ-A8P2-01 3 141231018 141231018 T A RASA2 Missense_Mutation p.N49K 0.20 deleterious(0.02) benign(0.272) TCGA-VQ-A8P2-01 3 141289865 141289865 C T RASA2 Silent p.Y325Y 0.12 TCGA-VQ-A8P2-01 3 14176351 14176351 G A TMEM43 Missense_Mutation p.G222E 0.56 tolerated(0.13) benign(0.02) TCGA-VQ-A8P2-01 3 1418730 1418730 A C CNTN6 Missense_Mutation p.S713R 0.42 tolerated(0.23) possibly_damaging(0.797) TCGA-VQ-A8P2-01 3 142048335 142048335 G A XRN1 Nonsense_Mutation p.R1448* 0.21 TCGA-VQ-A8P2-01 3 142102235 142102235 G A XRN1 Silent p.S841S 0.47 TCGA-VQ-A8P2-01 3 142137357 142137357 G A XRN1 Silent p.D445D 0.39 TCGA-VQ-A8P2-01 3 142186845 142186845 T - ATR Frame_Shift_Del p.K2206Nfs*3 0.32 TCGA-VQ-A8P2-01 3 14239560 14239560 C A LSM3 Missense_Mutation p.L85I 0.37 tolerated(0.08) possibly_damaging(0.654) TCGA-VQ-A8P2-01 3 142467276 142467277 - A TRPC1 Frame_Shift_Ins p.D205Gfs*2 0.29 TCGA-VQ-A8P2-01 3 142539746 142539746 C T PCOLCE2 Missense_Mutation p.C364Y 0.33 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 3 143292991 143292991 G A SLC9A9 Silent p.T313T 0.42 TCGA-VQ-A8P2-01 3 143704553 143704553 A G C3orf58 Missense_Mutation p.N276D 0.38 tolerated(0.3) benign(0.256) TCGA-VQ-A8P2-01 3 143708448 143708448 G A C3orf58 Missense_Mutation p.R353H 0.25 tolerated(0.43) benign(0.095) TCGA-VQ-A8P2-01 3 14548335 14548335 G A GRIP2 RNA 0.36 TCGA-VQ-A8P2-01 3 147108999 147108999 G A ZIC4 Silent p.C291C 0.31 TCGA-VQ-A8P2-01 3 147127935 147127935 C T ZIC1 Silent p.I12I 0.30 TCGA-VQ-A8P2-01 3 147128023 147128023 G A ZIC1 Missense_Mutation p.D42N 0.35 deleterious(0.01) possibly_damaging(0.486) TCGA-VQ-A8P2-01 3 147128158 147128158 G A ZIC1 Missense_Mutation p.G87S 0.39 tolerated(0.4) benign(0.004) TCGA-VQ-A8P2-01 3 148563303 148563303 C T CPB1 Missense_Mutation p.R291C 0.20 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 3 148601475 148601475 C A CPA3 Missense_Mutation p.A285D 0.50 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8P2-01 3 148786026 148786026 C T HLTF Splice_Site p.X330_splice 0.08 TCGA-VQ-A8P2-01 3 149192829 149192829 C T TM4SF4 Silent p.S55S 0.15 TCGA-VQ-A8P2-01 3 150403602 150403602 G A FAM194A Missense_Mutation p.T237M 0.20 tolerated(0.05) possibly_damaging(0.868) TCGA-VQ-A8P2-01 3 15055141 15055141 G A NR2C2 Missense_Mutation p.A59T 0.29 tolerated_low_confidence(0.12) benign(0.356) TCGA-VQ-A8P2-01 3 15084233 15084233 C T NR2C2 Intron 0.36 TCGA-VQ-A8P2-01 3 15094971 15094971 G T MRPS25 Missense_Mutation p.S82Y 0.39 deleterious(0.01) possibly_damaging(0.73) TCGA-VQ-A8P2-01 3 151045698 151045698 T - P2RY13 3'UTR 0.32 TCGA-VQ-A8P2-01 3 151055750 151055750 G C P2RY12 Missense_Mutation p.P295R 0.50 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 3 151082870 151082870 C T MED12L Missense_Mutation p.P986S 0.31 deleterious(0) probably_damaging(0.95) TCGA-VQ-A8P2-01 3 151598579 151598579 A G SUCNR1 Missense_Mutation p.Y83C 0.41 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 3 152553640 152553640 G A P2RY1 Silent p.S23S 0.36 TCGA-VQ-A8P2-01 3 152554471 152554471 C T P2RY1 Silent p.D300D 0.42 TCGA-VQ-A8P2-01 3 15287030 15287030 C T CAPN7 Intron 0.09 TCGA-VQ-A8P2-01 3 154010429 154010429 C T DHX36 Silent p.T575T 0.43 TCGA-VQ-A8P2-01 3 154146568 154146568 C T GPR149 Silent p.A279A 0.30 TCGA-VQ-A8P2-01 3 15467873 15467874 - A METTL6 Frame_Shift_Ins p.Y49Lfs*5 0.24 TCGA-VQ-A8P2-01 3 154862168 154862168 G A MME Silent p.Q446Q 0.38 TCGA-VQ-A8P2-01 3 15507883 15507883 G T COLQ Missense_Mutation p.P260H 0.40 deleterious(0.01) unknown(0) TCGA-VQ-A8P2-01 3 155311885 155311885 G A PLCH1 Silent p.C93C 0.43 TCGA-VQ-A8P2-01 3 155571478 155571479 - T SLC33A1 Frame_Shift_Ins p.N103Kfs*3 0.34 TCGA-VQ-A8P2-01 3 155623951 155623951 G A GMPS Missense_Mutation p.G142D 0.40 tolerated(0.06) benign(0.081) TCGA-VQ-A8P2-01 3 155838432 155838432 G T KCNAB1 Missense_Mutation p.S11I 0.43 deleterious_low_confidence(0) benign(0.023) TCGA-VQ-A8P2-01 3 15605044 15605044 G A HACL1 Missense_Mutation p.P509S 0.46 tolerated(0.24) benign(0.217) TCGA-VQ-A8P2-01 3 156710974 156710974 G T RP11-6F2.3 5'Flank 0.33 TCGA-VQ-A8P2-01 3 15686057 15686057 T G BTD Missense_Mutation p.F232V 0.43 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8P2-01 3 157081161 157081161 G T VEPH1 Missense_Mutation p.T576N 0.29 deleterious(0.01) benign(0.382) TCGA-VQ-A8P2-01 3 157820669 157820669 G A SHOX2 Missense_Mutation p.P142L 0.26 deleterious(0.01) possibly_damaging(0.526) TCGA-VQ-A8P2-01 3 158262060 158262060 C T RSRC1 Missense_Mutation p.A334V 0.39 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-VQ-A8P2-01 3 158538071 158538071 T C MFSD1 Silent p.C322C 0.23 TCGA-VQ-A8P2-01 3 158980532 158980532 T C IQCJ Intron 0.32 TCGA-VQ-A8P2-01 3 159605592 159605592 G A IQCJ-SCHIP1 Silent p.L440L 0.09 TCGA-VQ-A8P2-01 3 159997080 159997080 G A IFT80 Silent p.S579S 0.26 TCGA-VQ-A8P2-01 3 159998583 159998583 C T IFT80 Silent p.L512L 0.09 TCGA-VQ-A8P2-01 3 160122433 160122433 C T SMC4 Intron 0.09 TCGA-VQ-A8P2-01 3 160141217 160141217 C A SMC4 Missense_Mutation p.A675D 0.28 tolerated(0.46) benign(0.003) TCGA-VQ-A8P2-01 3 160156629 160156629 A T TRIM59 Missense_Mutation p.L115I 0.38 deleterious(0.02) probably_damaging(0.979) TCGA-VQ-A8P2-01 3 160219847 160219847 T C KPNA4 3'UTR 0.48 TCGA-VQ-A8P2-01 3 160474204 160474204 G T PPM1L Missense_Mutation p.W36C 0.13 deleterious(0.04) possibly_damaging(0.846) TCGA-VQ-A8P2-01 3 160958877 160958877 G T NMD3 Missense_Mutation p.G266V 0.38 deleterious(0) probably_damaging(0.991) TCGA-VQ-A8P2-01 3 160964132 160964132 C T NMD3 Silent p.L342L 0.15 TCGA-VQ-A8P2-01 3 160968092 160968092 A - NMD3 Frame_Shift_Del p.N455Mfs*48 0.33 TCGA-VQ-A8P2-01 3 16336471 16336471 G A OXNAD1 Silent p.T133T 0.10 TCGA-VQ-A8P2-01 3 16343348 16343348 A - OXNAD1 Frame_Shift_Del p.N218Ifs*14 0.25 TCGA-VQ-A8P2-01 3 16419471 16419471 G A RFTN1 Missense_Mutation p.R194C 0.40 tolerated(0.07) benign(0.004) TCGA-VQ-A8P2-01 3 164758799 164758799 T C SI Silent p.L696L 0.37 TCGA-VQ-A8P2-01 3 164781330 164781330 C T SI Splice_Site p.X270_splice 0.33 TCGA-VQ-A8P2-01 3 164785134 164785134 T G SI Missense_Mutation p.K210T 0.38 tolerated(0.42) benign(0.001) TCGA-VQ-A8P2-01 3 164906581 164906581 G A SLITRK3 Nonsense_Mutation p.R680* 0.33 TCGA-VQ-A8P2-01 3 167189471 167189471 C T SERPINI2 Missense_Mutation p.G51E 0.09 deleterious(0) probably_damaging(0.987) TCGA-VQ-A8P2-01 3 167272581 167272581 C T WDR49 Nonsense_Mutation p.W219* 0.42 TCGA-VQ-A8P2-01 3 167540838 167540838 C T SERPINI1 Silent p.G348G 0.29 TCGA-VQ-A8P2-01 3 167728056 167728056 G A GOLIM4 3'UTR 0.38 TCGA-VQ-A8P2-01 3 168833257 168833257 T - MECOM Frame_Shift_Del p.G679Efs*30 0.34 TCGA-VQ-A8P2-01 3 168838970 168838970 G A MECOM Missense_Mutation p.R213W 0.21 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 3 169513957 169513957 A C LRRC34 Intron 0.35 TCGA-VQ-A8P2-01 3 169644594 169644594 C T SAMD7 Missense_Mutation p.R182C 0.33 deleterious(0.02) possibly_damaging(0.84) TCGA-VQ-A8P2-01 3 169985726 169985726 C T PRKCI Missense_Mutation p.R130C 0.42 deleterious(0) probably_damaging(0.993) TCGA-VQ-A8P2-01 3 170102501 170102501 G T SKIL Missense_Mutation p.E459D 0.50 tolerated(0.34) benign(0.02) TCGA-VQ-A8P2-01 3 170198951 170198951 G T SLC7A14 Missense_Mutation p.L374M 0.27 deleterious(0.03) probably_damaging(0.98) TCGA-VQ-A8P2-01 3 170244625 170244625 G A SLC7A14 Missense_Mutation p.S34F 0.37 deleterious(0) possibly_damaging(0.851) TCGA-VQ-A8P2-01 3 170715715 170715715 G A SLC2A2 Silent p.L518L 0.11 TCGA-VQ-A8P2-01 3 170724966 170724966 C T SLC2A2 Missense_Mutation p.A195T 0.44 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8P2-01 3 170824458 170824458 A G TNIK Intron 0.52 TCGA-VQ-A8P2-01 3 170843727 170843727 G A TNIK Nonsense_Mutation p.R663* 0.18 TCGA-VQ-A8P2-01 3 171455388 171455388 C T PLD1 Silent p.T74T 0.32 TCGA-VQ-A8P2-01 3 172052839 172052839 C T FNDC3B Missense_Mutation p.P583S 0.07 tolerated(0.22) benign(0.001) TCGA-VQ-A8P2-01 3 172115203 172115203 C T FNDC3B Missense_Mutation p.L1185F 0.12 tolerated(0.15) benign(0.005) TCGA-VQ-A8P2-01 3 172241171 172241171 C T TNFSF10 Missense_Mutation p.A2T 0.30 deleterious_low_confidence(0.02) benign(0.016) TCGA-VQ-A8P2-01 3 17226524 17226524 G A TBC1D5 Intron 0.50 TCGA-VQ-A8P2-01 3 172674491 172674491 C T SPATA16 Missense_Mutation p.A353T 0.40 tolerated(0.51) benign(0.008) TCGA-VQ-A8P2-01 3 172674553 172674553 G A SPATA16 Missense_Mutation p.A332V 0.39 tolerated(0.63) possibly_damaging(0.695) TCGA-VQ-A8P2-01 3 173998540 173998541 - A NLGN1 Frame_Shift_Ins p.N642Kfs*16 0.31 TCGA-VQ-A8P2-01 3 176767910 176767910 C T TBL1XR1 Missense_Mutation p.A193T 0.39 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8P2-01 3 178560440 178560440 G A KCNMB2 Splice_Site p.X142_splice 0.40 TCGA-VQ-A8P2-01 3 178916876 178916876 G A PIK3CA Missense_Mutation p.R88Q 0.31 tolerated(0.06) probably_damaging(0.998) TCGA-VQ-A8P2-01 3 178921566 178921566 G A PIK3CA Missense_Mutation p.D350N 0.29 tolerated(0.05) possibly_damaging(0.688) TCGA-VQ-A8P2-01 3 179052260 179052260 T - ZNF639 3'UTR 0.48 TCGA-VQ-A8P2-01 3 179458095 179458095 G A USP13 Missense_Mutation p.E439K 0.39 deleterious(0.01) probably_damaging(0.963) TCGA-VQ-A8P2-01 3 180322316 180322316 T C TTC14 Missense_Mutation p.Y208H 0.27 tolerated(0.64) benign(0.01) TCGA-VQ-A8P2-01 3 180328304 180328305 - A TTC14 Frame_Shift_Ins p.G765Rfs*3 0.30 TCGA-VQ-A8P2-01 3 180693938 180693938 C T FXR1 Missense_Mutation p.P575L 0.51 tolerated_low_confidence(0.17) benign(0.002) TCGA-VQ-A8P2-01 3 182681718 182681718 G A DCUN1D1 Nonsense_Mutation p.Q114* 0.42 TCGA-VQ-A8P2-01 3 182740301 182740301 G A MCCC1 Silent p.S591S 0.35 TCGA-VQ-A8P2-01 3 182858384 182858384 C A LAMP3 Splice_Site p.X297_splice 0.32 TCGA-VQ-A8P2-01 3 182933783 182933783 C A MCF2L2 Missense_Mutation p.D824Y 0.08 deleterious(0.01) possibly_damaging(0.552) TCGA-VQ-A8P2-01 3 182988627 182988627 T - B3GNT5 Frame_Shift_Del p.F349Lfs*8 0.28 TCGA-VQ-A8P2-01 3 183027578 183027578 T C MCF2L2 Missense_Mutation p.T347A 0.17 tolerated(0.22) benign(0.008) TCGA-VQ-A8P2-01 3 183107532 183107532 C T MCF2L2 Missense_Mutation p.A38T 0.37 deleterious(0) probably_damaging(0.988) TCGA-VQ-A8P2-01 3 183217409 183217409 G A KLHL6 Silent p.C372C 0.33 TCGA-VQ-A8P2-01 3 183823948 183823948 G A HTR3E Missense_Mutation p.V346M 0.14 deleterious(0.01) probably_damaging(0.973) TCGA-VQ-A8P2-01 3 183860126 183860126 T G EIF2B5 Missense_Mutation p.D468E 0.46 tolerated(0.51) benign(0.263) TCGA-VQ-A8P2-01 3 183888469 183888469 G A DVL3 Missense_Mutation p.E693K 0.22 deleterious(0) possibly_damaging(0.621) TCGA-VQ-A8P2-01 3 183901363 183901363 C A AP2M1 Missense_Mutation p.R423S 0.15 deleterious(0) probably_damaging(0.96) TCGA-VQ-A8P2-01 3 183906155 183906155 C T ABCF3 Missense_Mutation p.R266W 0.35 deleterious(0.01) possibly_damaging(0.773) TCGA-VQ-A8P2-01 3 183908989 183908989 C T ABCF3 Silent p.H505H 0.36 TCGA-VQ-A8P2-01 3 18393576 18393576 G A SATB1 Missense_Mutation p.R563C 0.42 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 3 183976083 183976083 G A ECE2 Intron 0.45 TCGA-VQ-A8P2-01 3 184020207 184020207 G A PSMD2 Missense_Mutation p.A252T 0.17 deleterious(0.05) benign(0.035) TCGA-VQ-A8P2-01 3 184020286 184020286 T C PSMD2 Missense_Mutation p.V278A 0.48 deleterious(0.03) benign(0.265) TCGA-VQ-A8P2-01 3 184020536 184020536 C T PSMD2 Silent p.V311V 0.36 TCGA-VQ-A8P2-01 3 184040725 184040725 G A EIF4G1 Missense_Mutation p.D645N 0.35 deleterious(0) probably_damaging(0.96) TCGA-VQ-A8P2-01 3 184052538 184052538 G A EIF4G1 Missense_Mutation p.A1555T 0.10 tolerated(0.62) benign(0.034) TCGA-VQ-A8P2-01 3 184075273 184075273 C T CLCN2 Missense_Mutation p.V259I 0.36 deleterious(0.01) probably_damaging(0.985) TCGA-VQ-A8P2-01 3 18435993 18435993 G T SATB1 Silent p.S389S 0.14 TCGA-VQ-A8P2-01 3 185165702 185165702 G A MAP3K13 Missense_Mutation p.R326Q 0.39 deleterious(0.01) probably_damaging(0.951) TCGA-VQ-A8P2-01 3 185209440 185209440 G A TMEM41A Missense_Mutation p.A227V 0.44 tolerated(0.07) benign(0.036) TCGA-VQ-A8P2-01 3 185212549 185212549 C T TMEM41A Missense_Mutation p.V146M 0.33 deleterious(0) probably_damaging(0.986) TCGA-VQ-A8P2-01 3 185213065 185213065 C A TMEM41A Silent p.G104G 0.35 TCGA-VQ-A8P2-01 3 185367233 185367233 G T IGF2BP2 Silent p.P517P 0.10 TCGA-VQ-A8P2-01 3 185407221 185407221 A G IGF2BP2 Missense_Mutation p.V200A 0.40 deleterious(0.02) probably_damaging(0.997) TCGA-VQ-A8P2-01 3 185879418 185879418 C A DGKG Nonsense_Mutation p.E751* 0.37 TCGA-VQ-A8P2-01 3 186331054 186331054 C A AHSG Missense_Mutation p.L42M 0.43 tolerated(0.1) benign(0.406) TCGA-VQ-A8P2-01 3 186333563 186333563 C T AHSG Silent p.S101S 0.37 TCGA-VQ-A8P2-01 3 186338448 186338448 C A AHSG Missense_Mutation p.P278H 0.36 tolerated(0.15) benign(0.033) TCGA-VQ-A8P2-01 3 186442911 186442911 C T KNG1 Silent p.C142C 0.33 TCGA-VQ-A8P2-01 3 186445040 186445040 G A KNG1 Silent p.L193L 0.31 TCGA-VQ-A8P2-01 3 186504523 186504523 G A EIF4A2 Intron 0.46 TCGA-VQ-A8P2-01 3 186571004 186571004 C A ADIPOQ Missense_Mutation p.P53T 0.37 tolerated(0.17) possibly_damaging(0.775) TCGA-VQ-A8P2-01 3 186838873 186838873 C T RPL39L 3'UTR 0.13 TCGA-VQ-A8P2-01 3 186943263 186943263 T C MASP1 Silent p.E530E 0.30 TCGA-VQ-A8P2-01 3 186953477 186953477 G A MASP1 Missense_Mutation p.R728W 0.31 deleterious_low_confidence(0) possibly_damaging(0.854) TCGA-VQ-A8P2-01 3 187386756 187386756 C T SST 3'UTR 0.50 TCGA-VQ-A8P2-01 3 187416402 187416402 C T RTP2 Missense_Mutation p.A188T 0.38 tolerated(0.12) benign(0.003) TCGA-VQ-A8P2-01 3 187447343 187447343 C T BCL6 Missense_Mutation p.A284T 0.43 tolerated(0.57) benign(0.169) TCGA-VQ-A8P2-01 3 187449599 187449599 C T BCL6 Missense_Mutation p.R94Q 0.31 tolerated(0.37) probably_damaging(0.996) TCGA-VQ-A8P2-01 3 189597919 189597919 C T TP63 Intron 0.31 TCGA-VQ-A8P2-01 3 189612226 189612226 G A TP63 Missense_Mutation p.D660N 0.33 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-VQ-A8P2-01 3 189700862 189700862 G A LEPREL1 Missense_Mutation p.P433S 0.28 tolerated(0.74) benign(0) TCGA-VQ-A8P2-01 3 192125938 192125938 C T FGF12 Silent p.S25S 0.58 TCGA-VQ-A8P2-01 3 19322766 19322766 G A KCNH8 Silent p.S129S 0.49 TCGA-VQ-A8P2-01 3 193336694 193336694 G A OPA1 Missense_Mutation p.R198H 0.38 tolerated(0.21) benign(0) TCGA-VQ-A8P2-01 3 194063002 194063002 G T CPN2 Missense_Mutation p.L144M 0.11 tolerated(1) benign(0.001) TCGA-VQ-A8P2-01 3 194344285 194344285 C T TMEM44 Silent p.Q166Q 0.47 TCGA-VQ-A8P2-01 3 194407935 194407935 C T FAM43A Missense_Mutation p.A127V 0.45 tolerated(0.06) benign(0.116) TCGA-VQ-A8P2-01 3 19479730 19479730 C T KCNH8 Nonsense_Mutation p.R418* 0.35 TCGA-VQ-A8P2-01 3 195295825 195295825 A G APOD Silent p.I172I 0.37 TCGA-VQ-A8P2-01 3 195404608 195404608 C T SDHAP2 RNA 0.20 TCGA-VQ-A8P2-01 3 195610044 195610044 G A TNK2 Missense_Mutation p.T261M 0.32 deleterious(0) possibly_damaging(0.59) TCGA-VQ-A8P2-01 3 196098827 196098827 G A UBXN7 Silent p.R185R 0.35 TCGA-VQ-A8P2-01 3 196386659 196386659 G A NRROS Missense_Mutation p.A49T 0.32 tolerated(0.33) benign(0.013) TCGA-VQ-A8P2-01 3 196387264 196387264 C T NRROS Silent p.F250F 0.45 TCGA-VQ-A8P2-01 3 196509498 196509498 C T PAK2 Intron 0.35 TCGA-VQ-A8P2-01 3 196529957 196529957 C T PAK2 Missense_Mutation p.P120S 0.45 deleterious(0.01) probably_damaging(0.969) TCGA-VQ-A8P2-01 3 196547373 196547373 C A PAK2 Missense_Mutation p.L429M 0.43 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A8P2-01 3 196612799 196612799 G A SENP5 Silent p.Q249Q 0.33 TCGA-VQ-A8P2-01 3 196737603 196737603 G A MFI2 Silent p.Y432Y 0.16 TCGA-VQ-A8P2-01 3 196842852 196842852 G A DLG1 Silent p.A496A 0.40 TCGA-VQ-A8P2-01 3 197239159 197239159 G A BDH1 Silent p.F213F 0.53 TCGA-VQ-A8P2-01 3 197241147 197241147 G A BDH1 Nonsense_Mutation p.R184* 0.41 TCGA-VQ-A8P2-01 3 197401464 197401464 G T KIAA0226 3'Flank 0.63 TCGA-VQ-A8P2-01 3 197430442 197430442 G T KIAA0226 Missense_Mutation p.L183M 0.39 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 3 197678109 197678109 G A RPL35A Missense_Mutation p.E31K 0.47 deleterious(0.03) benign(0.019) TCGA-VQ-A8P2-01 3 19974952 19974952 T C EFHB Missense_Mutation p.K187E 0.09 tolerated_low_confidence(0.64) benign(0.003) TCGA-VQ-A8P2-01 3 20181824 20181824 G T KAT2B Nonsense_Mutation p.E658* 0.39 TCGA-VQ-A8P2-01 3 21552414 21552414 G A ZNF385D Silent p.S126S 0.17 TCGA-VQ-A8P2-01 3 21606157 21606157 G A ZNF385D Missense_Mutation p.A62V 0.22 deleterious(0) probably_damaging(0.935) TCGA-VQ-A8P2-01 3 23848792 23848792 G A UBE2E1 Missense_Mutation p.S11N 0.44 tolerated_low_confidence(0.19) unknown(0) TCGA-VQ-A8P2-01 3 23929060 23929060 C T UBE2E1 Missense_Mutation p.A69V 0.41 deleterious(0) probably_damaging(0.935) TCGA-VQ-A8P2-01 3 24018881 24018881 G T NR1D2 Nonsense_Mutation p.E571* 0.26 TCGA-VQ-A8P2-01 3 25636151 25636151 C T RARB Missense_Mutation p.R378C 0.28 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 3 25638169 25638170 - A RARB 3'UTR 0.44 TCGA-VQ-A8P2-01 3 25657005 25657005 C A TOP2B Missense_Mutation p.D1137Y 0.23 deleterious(0) possibly_damaging(0.881) TCGA-VQ-A8P2-01 3 26751534 26751534 G A LRRC3B Missense_Mutation p.R124Q 0.37 tolerated(0.27) benign(0.003) TCGA-VQ-A8P2-01 3 27332758 27332758 A G NEK10 Missense_Mutation p.Y534H 0.42 deleterious(0) probably_damaging(0.986) TCGA-VQ-A8P2-01 3 27333026 27333026 T C NEK10 Silent p.V475V 0.39 TCGA-VQ-A8P2-01 3 27436204 27436204 G T SLC4A7 Nonsense_Mutation p.C965* 0.19 TCGA-VQ-A8P2-01 3 27436567 27436567 C A SLC4A7 Nonsense_Mutation p.G906* 0.20 TCGA-VQ-A8P2-01 3 27478893 27478893 C A SLC4A7 Missense_Mutation p.W129C 0.46 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 3 29628650 29628650 C T RBMS3 Missense_Mutation p.A118V 0.16 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 3 3139716 3139716 G A IL5RA Nonsense_Mutation p.Q183* 0.40 TCGA-VQ-A8P2-01 3 31703541 31703541 G A OSBPL10 3'UTR 0.36 TCGA-VQ-A8P2-01 3 31705692 31705692 C T OSBPL10 Missense_Mutation p.R710Q 0.48 tolerated(0.12) benign(0.025) TCGA-VQ-A8P2-01 3 31871621 31871621 C T OSBPL10 Missense_Mutation p.G214S 0.36 tolerated(1) benign(0.003) TCGA-VQ-A8P2-01 3 31871622 31871622 G A OSBPL10 Silent p.P213P 0.48 TCGA-VQ-A8P2-01 3 3189313 3189313 A - TRNT1 Frame_Shift_Del p.N329Ifs*5 0.27 TCGA-VQ-A8P2-01 3 32533303 32533304 - A CMTM6 Frame_Shift_Ins p.E72* 0.29 TCGA-VQ-A8P2-01 3 32570073 32570073 C T DYNC1LI1 Missense_Mutation p.V443I 0.09 deleterious(0) possibly_damaging(0.826) TCGA-VQ-A8P2-01 3 32806268 32806268 C T CNOT10 Silent p.S717S 0.25 TCGA-VQ-A8P2-01 3 32814971 32814971 G T CNOT10 Missense_Mutation p.Q761H 0.40 deleterious(0.02) probably_damaging(0.996) TCGA-VQ-A8P2-01 3 32932035 32932035 G A TRIM71 Missense_Mutation p.V447M 0.35 tolerated(0.11) benign(0.008) TCGA-VQ-A8P2-01 3 32932038 32932038 C T TRIM71 Missense_Mutation p.R448W 0.33 deleterious(0.01) possibly_damaging(0.838) TCGA-VQ-A8P2-01 3 32932742 32932742 C T TRIM71 Silent p.F682F 0.45 TCGA-VQ-A8P2-01 3 32933178 32933178 C A TRIM71 Missense_Mutation p.L828M 0.16 deleterious(0.01) possibly_damaging(0.901) TCGA-VQ-A8P2-01 3 35786035 35786035 T G ARPP21 Intron 0.25 TCGA-VQ-A8P2-01 3 36779461 36779461 C T DCLK3 Silent p.E230E 0.10 TCGA-VQ-A8P2-01 3 36897723 36897723 C A TRANK1 Nonsense_Mutation p.G1120* 0.19 TCGA-VQ-A8P2-01 3 36899407 36899407 G A TRANK1 Silent p.G558G 0.08 TCGA-VQ-A8P2-01 3 37034441 37034441 C T EPM2AIP1 Missense_Mutation p.R43H 0.09 tolerated(0.24) benign(0.005) TCGA-VQ-A8P2-01 3 37365643 37365643 G T GOLGA4 Missense_Mutation p.D778Y 0.46 probably_damaging(0.985) TCGA-VQ-A8P2-01 3 37366803 37366803 C T GOLGA4 Silent p.D1164D 0.11 TCGA-VQ-A8P2-01 3 37821426 37821426 G A ITGA9 Missense_Mutation p.A901T 0.40 deleterious(0.01) benign(0.004) TCGA-VQ-A8P2-01 3 38049588 38049588 C T PLCD1 Missense_Mutation p.R722H 0.32 deleterious(0) probably_damaging(0.992) TCGA-VQ-A8P2-01 3 38129787 38129787 G A DLEC1 Missense_Mutation p.A525T 0.37 deleterious(0.02) benign(0.098) TCGA-VQ-A8P2-01 3 38158745 38158745 C T DLEC1 Missense_Mutation p.A1451V 0.29 tolerated(0.1) possibly_damaging(0.631) TCGA-VQ-A8P2-01 3 38163210 38163210 G A DLEC1 Missense_Mutation p.R1653Q 0.47 tolerated(0.38) benign(0.022) TCGA-VQ-A8P2-01 3 38173433 38173433 T C ACAA1 Silent p.A129A 0.28 TCGA-VQ-A8P2-01 3 38291485 38291485 C T OXSR1 Nonsense_Mutation p.R451* 0.12 TCGA-VQ-A8P2-01 3 38359860 38359860 G T SLC22A14 3'UTR 0.39 TCGA-VQ-A8P2-01 3 38592951 38592951 G A SCN5A Nonsense_Mutation p.R1638* 0.36 TCGA-VQ-A8P2-01 3 38597183 38597183 G T SCN5A Silent p.G1502G 0.47 TCGA-VQ-A8P2-01 3 38616851 38616851 G A SCN5A Silent p.I1201I 0.38 TCGA-VQ-A8P2-01 3 38766718 38766718 G A SCN10A Missense_Mutation p.P1059S 0.35 tolerated(0.33) benign(0.014) TCGA-VQ-A8P2-01 3 38888497 38888497 G A SCN11A Silent p.A1688A 0.47 TCGA-VQ-A8P2-01 3 38949441 38949441 T - SCN11A Frame_Shift_Del p.K491Sfs*5 0.50 TCGA-VQ-A8P2-01 3 39172564 39172564 C T TTC21A Missense_Mutation p.A854V 0.39 tolerated(0.11) benign(0.129) TCGA-VQ-A8P2-01 3 39174675 39174675 G A TTC21A Missense_Mutation p.D906N 0.38 deleterious(0.03) benign(0.017) TCGA-VQ-A8P2-01 3 39184563 39184563 C T CSRNP1 Missense_Mutation p.E585K 0.48 deleterious(0) possibly_damaging(0.629) TCGA-VQ-A8P2-01 3 39185283 39185283 C A CSRNP1 Missense_Mutation p.D345Y 0.39 deleterious(0) probably_damaging(0.973) TCGA-VQ-A8P2-01 3 39227243 39227243 C A XIRP1 Missense_Mutation p.G1232C 0.43 deleterious_low_confidence(0.01) benign(0.436) TCGA-VQ-A8P2-01 3 39227929 39227929 G A XIRP1 Missense_Mutation p.P1003L 0.31 tolerated_low_confidence(0.43) benign(0.003) TCGA-VQ-A8P2-01 3 39229746 39229746 G A XIRP1 Silent p.V397V 0.37 TCGA-VQ-A8P2-01 3 39230654 39230654 G A XIRP1 Missense_Mutation p.R95C 0.48 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 3 39307059 39307059 G A CX3CR1 Silent p.V346V 0.34 TCGA-VQ-A8P2-01 3 39307286 39307286 C T CX3CR1 Missense_Mutation p.V271M 0.40 tolerated(0.06) benign(0.424) TCGA-VQ-A8P2-01 3 40085745 40085745 C T MYRIP Silent p.C105C 0.20 TCGA-VQ-A8P2-01 3 40231358 40231358 G A MYRIP Missense_Mutation p.A357T 0.14 deleterious(0.04) benign(0.059) TCGA-VQ-A8P2-01 3 403381 403381 G A CHL1 Splice_Site p.X436_splice 0.08 TCGA-VQ-A8P2-01 3 40523362 40523362 C T ZNF619 Silent p.G11G 0.34 TCGA-VQ-A8P2-01 3 40529420 40529420 G A ZNF619 Silent p.Q513Q 0.55 TCGA-VQ-A8P2-01 3 40574004 40574004 C T ZNF621 Missense_Mutation p.A248V 0.32 tolerated(0.05) benign(0.002) TCGA-VQ-A8P2-01 3 41275225 41275225 C T CTNNB1 Missense_Mutation p.A464V 0.39 tolerated(0.09) possibly_damaging(0.62) TCGA-VQ-A8P2-01 3 41275709 41275709 G A CTNNB1 Missense_Mutation p.R535Q 0.38 deleterious(0.04) benign(0.173) TCGA-VQ-A8P2-01 3 41860994 41861015 TCTTCCTAAAATGAAGTGGGAA CTTCCTAAAATGAAGTGGG ULK4 Splice_Site p.X589_splice 0.27 TCGA-VQ-A8P2-01 3 41996184 41996184 C T ULK4 Missense_Mutation p.R23Q 0.52 deleterious(0) probably_damaging(0.99) TCGA-VQ-A8P2-01 3 42244183 42244183 C T TRAK1 Silent p.G561G 0.31 TCGA-VQ-A8P2-01 3 42674257 42674257 C T NKTR Nonsense_Mutation p.R239* 0.13 TCGA-VQ-A8P2-01 3 42685407 42685407 G A NKTR Missense_Mutation p.D1405N 0.35 deleterious_low_confidence(0) unknown(0) TCGA-VQ-A8P2-01 3 42739054 42739054 G T HHATL Missense_Mutation p.L271I 0.12 deleterious(0.03) possibly_damaging(0.619) TCGA-VQ-A8P2-01 3 42793472 42793472 C T CCDC13 Missense_Mutation p.A187T 0.37 tolerated(0.42) benign(0.009) TCGA-VQ-A8P2-01 3 42906427 42906427 G A ACKR2 Missense_Mutation p.E145K 0.36 deleterious(0.01) possibly_damaging(0.874) TCGA-VQ-A8P2-01 3 43121390 43121390 G T POMGNT2 Missense_Mutation p.L512I 0.48 tolerated(0.32) probably_damaging(0.996) TCGA-VQ-A8P2-01 3 43381954 43381954 G A SNRK Missense_Mutation p.V303M 0.42 tolerated(0.23) benign(0.254) TCGA-VQ-A8P2-01 3 4403790 4403790 C T SUMF1 3'UTR 0.22 TCGA-VQ-A8P2-01 3 44488750 44488750 G T ZNF445 Missense_Mutation p.L805I 0.18 deleterious(0.01) unknown(0) TCGA-VQ-A8P2-01 3 44488942 44488942 G A ZNF445 Missense_Mutation p.P741S 0.13 tolerated(0.09) unknown(0) TCGA-VQ-A8P2-01 3 44496614 44496614 C A ZNF445 Missense_Mutation p.R143M 0.31 deleterious(0.04) possibly_damaging(0.803) TCGA-VQ-A8P2-01 3 44636274 44636274 A G ZNF660 Missense_Mutation p.K197E 0.32 deleterious(0.02) probably_damaging(0.986) TCGA-VQ-A8P2-01 3 44700900 44700900 C A ZNF35 Missense_Mutation p.L349I 0.29 deleterious(0.02) possibly_damaging(0.86) TCGA-VQ-A8P2-01 3 447474 447474 T C CHL1 3'UTR 0.56 TCGA-VQ-A8P2-01 3 44763001 44763001 G A ZNF502 Missense_Mutation p.R231K 0.44 tolerated(0.09) possibly_damaging(0.649) TCGA-VQ-A8P2-01 3 44905706 44905706 C T TMEM42 Silent p.C70C 0.44 TCGA-VQ-A8P2-01 3 44932194 44932194 C A TGM4 Missense_Mutation p.L134I 0.29 tolerated(1) benign(0) TCGA-VQ-A8P2-01 3 44943311 44943311 C T TGM4 Missense_Mutation p.R287C 0.57 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 3 45000755 45000755 C T ZDHHC3 Silent p.A58A 0.49 TCGA-VQ-A8P2-01 3 45153634 45153634 G T CDCP1 Missense_Mutation p.P199Q 0.38 deleterious(0) probably_damaging(0.992) TCGA-VQ-A8P2-01 3 45515795 45515795 C T LARS2 Missense_Mutation p.H271Y 0.47 deleterious(0.03) possibly_damaging(0.836) TCGA-VQ-A8P2-01 3 45677711 45677711 A C LIMD1 Missense_Mutation p.Y493S 0.33 deleterious(0) possibly_damaging(0.795) TCGA-VQ-A8P2-01 3 45785180 45785180 C T SACM1L 3'UTR 0.08 TCGA-VQ-A8P2-01 3 45867823 45867823 A G LZTFL1 Missense_Mutation p.Y295H 0.32 deleterious(0) benign(0.322) TCGA-VQ-A8P2-01 3 45942737 45942737 A T CCR9 Nonsense_Mutation p.R153* 0.10 TCGA-VQ-A8P2-01 3 45988278 45988278 G A CXCR6 Missense_Mutation p.C102Y 0.12 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 3 46063451 46063451 G A XCR1 5'UTR 0.44 TCGA-VQ-A8P2-01 3 46449667 46449667 G A CCRL2 Missense_Mutation p.A45T 0.30 tolerated(0.66) benign(0.003) TCGA-VQ-A8P2-01 3 46480910 46480910 G A LTF Silent p.L595L 0.32 TCGA-VQ-A8P2-01 3 46713378 46713378 C T ALS2CL Missense_Mutation p.A894T 0.36 deleterious(0) probably_damaging(0.962) TCGA-VQ-A8P2-01 3 46939401 46939401 G T PTH1R Missense_Mutation p.G124C 0.46 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 3 47037782 47037782 G A NBEAL2 Missense_Mutation p.G725S 0.33 deleterious(0) probably_damaging(0.928) TCGA-VQ-A8P2-01 3 47041575 47041575 C T NBEAL2 Missense_Mutation p.S1329L 0.08 tolerated(0.17) benign(0.007) TCGA-VQ-A8P2-01 3 47045754 47045754 C T NBEAL2 Silent p.G2023G 0.48 TCGA-VQ-A8P2-01 3 47049880 47049880 C T NBEAL2 Silent p.S2609S 0.48 TCGA-VQ-A8P2-01 3 47050533 47050533 C T NBEAL2 Silent p.A2694A 0.40 TCGA-VQ-A8P2-01 3 47103716 47103716 C T SETD2 Missense_Mutation p.R2077Q 0.17 deleterious(0) probably_damaging(0.994) TCGA-VQ-A8P2-01 3 47125724 47125724 G A SETD2 Missense_Mutation p.S1849L 0.42 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8P2-01 3 47147505 47147505 C T SETD2 Missense_Mutation p.M1607I 0.38 deleterious(0) benign(0.11) TCGA-VQ-A8P2-01 3 47162677 47162677 C A SETD2 Missense_Mutation p.R1150I 0.09 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 3 47277917 47277917 T C KIF9 Intron 0.15 TCGA-VQ-A8P2-01 3 47361241 47361241 G T KLHL18 Missense_Mutation p.Q76H 0.44 deleterious(0.01) probably_damaging(0.975) TCGA-VQ-A8P2-01 3 47447464 47447464 G A PTPN23 Silent p.R158R 0.50 TCGA-VQ-A8P2-01 3 47468974 47468974 G A SCAP Silent p.H198H 0.31 TCGA-VQ-A8P2-01 3 47651784 47651784 G A SMARCC1 Missense_Mutation p.R939C 0.37 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8P2-01 3 47890218 47890218 C T DHX30 Missense_Mutation p.R894C 0.09 deleterious(0.05) benign(0.304) TCGA-VQ-A8P2-01 3 47951159 47951159 C A MAP4 Intron 0.42 TCGA-VQ-A8P2-01 3 4817022 4817022 C A ITPR1 Missense_Mutation p.L2011I 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A8P2-01 3 48265860 48265860 C T CAMP Missense_Mutation p.T76M 0.09 deleterious(0) probably_damaging(0.955) TCGA-VQ-A8P2-01 3 48414189 48414189 C T FBXW12 5'UTR 0.21 TCGA-VQ-A8P2-01 3 48461540 48461540 C A PLXNB1 Missense_Mutation p.A719S 0.29 tolerated(0.54) benign(0.002) TCGA-VQ-A8P2-01 3 48464991 48464991 C A PLXNB1 Nonsense_Mutation p.E344* 0.30 TCGA-VQ-A8P2-01 3 4853060 4853060 C T ITPR1 Silent p.L2447L 0.24 TCGA-VQ-A8P2-01 3 48602255 48602255 G A COL7A1 Missense_Mutation p.R2927C 0.41 benign(0.208) TCGA-VQ-A8P2-01 3 48621940 48621940 C T COL7A1 Missense_Mutation p.R1366Q 0.31 unknown(0) TCGA-VQ-A8P2-01 3 48621990 48621990 C T COL7A1 Splice_Site p.X1350_splice 0.28 TCGA-VQ-A8P2-01 3 48624052 48624052 A G COL7A1 Missense_Mutation p.I1116T 0.32 unknown(0) TCGA-VQ-A8P2-01 3 48626802 48626802 C T COL7A1 Missense_Mutation p.A758T 0.30 unknown(0) TCGA-VQ-A8P2-01 3 48682920 48682920 C T CELSR3 Missense_Mutation p.A2585T 0.23 tolerated(0.09) possibly_damaging(0.5) TCGA-VQ-A8P2-01 3 48697179 48697179 G T CELSR3 Silent p.A963A 0.41 TCGA-VQ-A8P2-01 3 48697567 48697567 G T CELSR3 Missense_Mutation p.S834Y 0.39 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 3 48699187 48699187 C T CELSR3 Missense_Mutation p.R294H 0.38 tolerated_low_confidence(0.13) probably_damaging(0.992) TCGA-VQ-A8P2-01 3 48725853 48725853 A G IP6K2 Silent p.D378D 0.31 TCGA-VQ-A8P2-01 3 48884778 48884778 C A PRKAR2A Missense_Mutation p.E84D 0.42 tolerated(0.15) benign(0.034) TCGA-VQ-A8P2-01 3 48900049 48900049 T A SLC25A20 Missense_Mutation p.D154V 0.33 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 3 49051071 49051071 C T WDR6 Missense_Mutation p.R732C 0.16 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 3 49052660 49052660 A G WDR6 Missense_Mutation p.E1132G 0.33 deleterious(0.05) benign(0.075) TCGA-VQ-A8P2-01 3 49053387 49053387 C A DALRD3 Intron 0.11 TCGA-VQ-A8P2-01 3 49059688 49059688 C - NDUFAF3 Intron 0.41 TCGA-VQ-A8P2-01 3 49137518 49137518 G A QARS Missense_Mutation p.R391C 0.51 deleterious(0) benign(0.02) TCGA-VQ-A8P2-01 3 49155454 49155454 C T USP19 Missense_Mutation p.R75H 0.22 tolerated_low_confidence(0.54) benign(0.001) TCGA-VQ-A8P2-01 3 49156554 49156554 C A USP19 Missense_Mutation p.G9C 0.32 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-VQ-A8P2-01 3 49161295 49161295 C T LAMB2 Silent p.T1221T 0.37 TCGA-VQ-A8P2-01 3 49162217 49162217 C T LAMB2 Missense_Mutation p.R1009H 0.19 deleterious(0.04) benign(0.029) TCGA-VQ-A8P2-01 3 49169149 49169149 C T LAMB2 Missense_Mutation p.R156H 0.48 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 3 49315723 49315723 G A USP4 3'UTR 0.09 TCGA-VQ-A8P2-01 3 49321491 49321491 G A USP4 Silent p.V823V 0.37 TCGA-VQ-A8P2-01 3 49412922 49412922 T C RHOA Missense_Mutation p.Y34C 0.43 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 3 49699544 49699544 C A BSN Nonsense_Mutation p.Y3422* 0.29 TCGA-VQ-A8P2-01 3 49700703 49700703 G A BSN Silent p.E3704E 0.36 TCGA-VQ-A8P2-01 3 49701900 49701900 G A BSN Missense_Mutation p.A3885T 0.42 probably_damaging(0.959) TCGA-VQ-A8P2-01 3 49721623 49721623 C A MST1 Splice_Site p.X673_splice 0.17 TCGA-VQ-A8P2-01 3 49755432 49755432 G T AMIGO3 Silent p.G489G 0.39 TCGA-VQ-A8P2-01 3 49756429 49756429 C T AMIGO3 Missense_Mutation p.R157H 0.49 tolerated(0.06) possibly_damaging(0.607) TCGA-VQ-A8P2-01 3 49760140 49760140 C T GMPPB Silent p.E150E 0.36 TCGA-VQ-A8P2-01 3 50099449 50099450 - A RBM6 Frame_Shift_Ins p.P835Tfs*9 0.29 TCGA-VQ-A8P2-01 3 50155867 50155867 C A RBM5 Missense_Mutation p.A809D 0.42 deleterious(0) probably_damaging(0.987) TCGA-VQ-A8P2-01 3 5024984 5024984 C T BHLHE40 Silent p.S282S 0.46 TCGA-VQ-A8P2-01 3 50329921 50329921 G T IFRD2 5'Flank 0.19 TCGA-VQ-A8P2-01 3 50330053 50330053 C T IFRD2 5'Flank 0.38 TCGA-VQ-A8P2-01 3 50340361 50340361 G A HYAL1 Silent p.C9C 0.48 TCGA-VQ-A8P2-01 3 50379573 50379573 T C ZMYND10 Splice_Site p.X292_splice 0.38 TCGA-VQ-A8P2-01 3 50379839 50379839 G A ZMYND10 Missense_Mutation p.R288W 0.62 deleterious(0) benign(0.339) TCGA-VQ-A8P2-01 3 50385271 50385271 G A NPRL2 Missense_Mutation p.R332W 0.31 tolerated(0.18) possibly_damaging(0.616) TCGA-VQ-A8P2-01 3 50414940 50414940 G A CACNA2D2 Silent p.D528D 0.35 TCGA-VQ-A8P2-01 3 50417407 50417407 G A CACNA2D2 Silent p.I295I 0.17 TCGA-VQ-A8P2-01 3 51297747 51297747 T - DOCK3 Frame_Shift_Del p.F783Lfs*30 0.22 TCGA-VQ-A8P2-01 3 51417604 51417604 C - DOCK3 Frame_Shift_Del p.P1852Qfs*45 0.52 TCGA-VQ-A8P2-01 3 51431381 51431381 G T RBM15B Missense_Mutation p.G851C 0.11 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 3 51743398 51743398 C T GRM2 Silent p.P133P 0.37 TCGA-VQ-A8P2-01 3 51929108 51929108 C T IQCF1 Missense_Mutation p.R139H 0.32 tolerated(0.13) benign(0.316) TCGA-VQ-A8P2-01 3 51980283 51980283 C A PARP3 Silent p.R407R 0.43 TCGA-VQ-A8P2-01 3 52014919 52014919 G A ABHD14A Missense_Mutation p.R234H 0.37 deleterious(0.05) benign(0.091) TCGA-VQ-A8P2-01 3 52027749 52027749 A G RPL29 3'UTR 0.39 TCGA-VQ-A8P2-01 3 52263139 52263139 G A TWF2 Nonsense_Mutation p.Q321* 0.40 TCGA-VQ-A8P2-01 3 52263754 52263754 G A TLR9 Nonsense_Mutation p.R130* 0.39 TCGA-VQ-A8P2-01 3 52282398 52282398 G T PPM1M Missense_Mutation p.E69D 0.62 deleterious(0.03) probably_damaging(0.942) TCGA-VQ-A8P2-01 3 52291528 52291529 - A WDR82 Frame_Shift_Ins p.W307Lfs*6 0.10 TCGA-VQ-A8P2-01 3 52378559 52378559 G A DNAH1 Missense_Mutation p.R447H 0.47 benign(0.057) TCGA-VQ-A8P2-01 3 52437525 52437525 A G BAP1 Missense_Mutation p.Y546H 0.37 tolerated_low_confidence(0.65) benign(0.003) TCGA-VQ-A8P2-01 3 52439242 52439242 G A BAP1 Silent p.L334L 0.32 TCGA-VQ-A8P2-01 3 52454985 52454985 C T PHF7 Silent p.C160C 0.37 TCGA-VQ-A8P2-01 3 52470019 52470019 G A SEMA3G Missense_Mutation p.A650V 0.59 deleterious(0.04) benign(0.009) TCGA-VQ-A8P2-01 3 52476238 52476238 G A SEMA3G Missense_Mutation p.P141L 0.35 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 3 52522089 52522089 G A NISCH Missense_Mutation p.V861I 0.11 tolerated(0.24) benign(0.057) TCGA-VQ-A8P2-01 3 52523507 52523507 C T NISCH Missense_Mutation p.T1090M 0.64 tolerated(0.22) benign(0) TCGA-VQ-A8P2-01 3 52544182 52544182 G T STAB1 Missense_Mutation p.E853D 0.13 tolerated(0.07) benign(0.053) TCGA-VQ-A8P2-01 3 52558010 52558010 G A STAB1 Missense_Mutation p.G2507S 0.16 deleterious(0.02) probably_damaging(0.962) TCGA-VQ-A8P2-01 3 52692285 52692285 G A PBRM1 Missense_Mutation p.A192V 0.42 tolerated(0.05) benign(0.002) TCGA-VQ-A8P2-01 3 52728768 52728768 C T GLT8D1 3'UTR 0.33 TCGA-VQ-A8P2-01 3 52731828 52731828 C - GLT8D1 Frame_Shift_Del p.A80Pfs*5 0.35 TCGA-VQ-A8P2-01 3 52816079 52816079 C A ITIH1 Missense_Mutation p.L271M 0.11 deleterious(0.03) probably_damaging(0.929) TCGA-VQ-A8P2-01 3 52825534 52825534 G A ITIH1 Silent p.G832G 0.21 TCGA-VQ-A8P2-01 3 52835033 52835033 C T ITIH3 Silent p.G418G 0.37 TCGA-VQ-A8P2-01 3 52860905 52860905 T C ITIH4 Missense_Mutation p.T141A 0.41 deleterious(0.01) possibly_damaging(0.85) TCGA-VQ-A8P2-01 3 52966225 52966225 C T SFMBT1 Missense_Mutation p.V185I 0.37 tolerated(0.88) benign(0.11) TCGA-VQ-A8P2-01 3 53226134 53226134 G A PRKCD Missense_Mutation p.R628K 0.28 tolerated(0.93) benign(0) TCGA-VQ-A8P2-01 3 53326662 53326662 G T DCP1A Missense_Mutation p.L274M 0.17 tolerated(0.11) benign(0.055) TCGA-VQ-A8P2-01 3 53529245 53529245 G T CACNA1D Missense_Mutation p.A18S 0.25 tolerated_low_confidence(0.26) benign(0.003) TCGA-VQ-A8P2-01 3 53764524 53764524 A T CACNA1D Missense_Mutation p.E779D 0.58 tolerated(0.25) possibly_damaging(0.563) TCGA-VQ-A8P2-01 3 53783487 53783488 - A CACNA1D Frame_Shift_Ins p.N1191Kfs*7 0.27 TCGA-VQ-A8P2-01 3 53810668 53810668 C T CACNA1D Silent p.F1487F 0.12 TCGA-VQ-A8P2-01 3 53844221 53844221 G A CACNA1D Missense_Mutation p.D2050N 0.18 tolerated_low_confidence(0.18) benign(0.033) TCGA-VQ-A8P2-01 3 53891664 53891664 C T IL17RB Nonsense_Mutation p.R232* 0.17 TCGA-VQ-A8P2-01 3 54959070 54959070 A G LRTM1 Silent p.N60N 0.36 TCGA-VQ-A8P2-01 3 56651273 56651273 G A CCDC66 Silent p.K659K 0.23 TCGA-VQ-A8P2-01 3 56779266 56779267 - T ARHGEF3 Frame_Shift_Ins p.N311Kfs*2 0.27 TCGA-VQ-A8P2-01 3 57108290 57108290 C A SPATA12 Missense_Mutation p.L190M 0.12 tolerated_low_confidence(0.26) possibly_damaging(0.82) TCGA-VQ-A8P2-01 3 57232883 57232883 C T HESX1 Silent p.S85S 0.43 TCGA-VQ-A8P2-01 3 57613913 57613914 - T DENND6A 3'UTR 0.33 TCGA-VQ-A8P2-01 3 57817175 57817175 C T SLMAP Silent p.G88G 0.14 TCGA-VQ-A8P2-01 3 57847676 57847676 C T SLMAP Nonsense_Mutation p.R277* 0.38 TCGA-VQ-A8P2-01 3 58109388 58109388 A G FLNB Missense_Mutation p.K1232R 0.38 tolerated(0.25) benign(0.007) TCGA-VQ-A8P2-01 3 58520133 58520133 G A ACOX2 Missense_Mutation p.R93C 0.46 deleterious(0.02) possibly_damaging(0.836) TCGA-VQ-A8P2-01 3 62180831 62180831 G A PTPRG Silent p.T438T 0.37 TCGA-VQ-A8P2-01 3 62253140 62253140 C T PTPRG Silent p.S904S 0.36 TCGA-VQ-A8P2-01 3 62319059 62319059 C T C3orf14 Nonsense_Mutation p.R128* 0.32 TCGA-VQ-A8P2-01 3 62358014 62358014 G A FEZF2 Missense_Mutation p.S177L 0.44 deleterious(0.01) possibly_damaging(0.602) TCGA-VQ-A8P2-01 3 63981618 63981618 G A ATXN7 Missense_Mutation p.R707H 0.28 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 3 63981998 63981998 G A ATXN7 Missense_Mutation p.G834R 0.52 deleterious(0.03) probably_damaging(0.972) TCGA-VQ-A8P2-01 3 67049548 67049548 G A KBTBD8 Missense_Mutation p.E54K 0.25 deleterious(0.04) possibly_damaging(0.597) TCGA-VQ-A8P2-01 3 6903436 6903436 A G GRM7 Missense_Mutation p.T121A 0.55 tolerated(0.37) possibly_damaging(0.622) TCGA-VQ-A8P2-01 3 6903441 6903441 C T GRM7 Silent p.F122F 0.54 TCGA-VQ-A8P2-01 3 69053550 69053550 C T EOGT Missense_Mutation p.R200H 0.41 tolerated(1) benign(0.034) TCGA-VQ-A8P2-01 3 69058941 69058941 C A EOGT Missense_Mutation p.Q19H 0.12 tolerated_low_confidence(0.13) benign(0.124) TCGA-VQ-A8P2-01 3 69072452 69072452 T G TMF1 Missense_Mutation p.N1053T 0.40 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8P2-01 3 69124610 69124610 C T UBA3 Missense_Mutation p.G79S 0.42 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 3 69168490 69168490 G A LMOD3 Missense_Mutation p.T339M 0.46 deleterious(0.02) benign(0.402) TCGA-VQ-A8P2-01 3 69435110 69435110 C T FRMD4B Missense_Mutation p.D11N 0.31 deleterious_low_confidence(0.01) benign(0.439) TCGA-VQ-A8P2-01 3 71026099 71026099 G A FOXP1 Missense_Mutation p.T510M 0.29 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 3 71247497 71247497 G A FOXP1 Silent p.N12N 0.12 TCGA-VQ-A8P2-01 3 7188263 7188263 C A GRM7 Missense_Mutation p.A215D 0.14 tolerated(0.2) possibly_damaging(0.679) TCGA-VQ-A8P2-01 3 72428561 72428561 G A RYBP Missense_Mutation p.S148F 0.12 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8P2-01 3 72842081 72842081 C T SHQ1 Nonsense_Mutation p.W389* 0.31 TCGA-VQ-A8P2-01 3 73016808 73016808 C T GXYLT2 Nonsense_Mutation p.R363* 0.52 TCGA-VQ-A8P2-01 3 73433606 73433606 C T PDZRN3 Missense_Mutation p.R704H 0.50 deleterious(0) benign(0.274) TCGA-VQ-A8P2-01 3 73433702 73433702 T C PDZRN3 Missense_Mutation p.D672G 0.35 tolerated(0.26) benign(0.002) TCGA-VQ-A8P2-01 3 73433947 73433947 G A PDZRN3 Silent p.G590G 0.20 TCGA-VQ-A8P2-01 3 74350673 74350673 C T CNTN3 Silent p.T657T 0.39 TCGA-VQ-A8P2-01 3 77147339 77147339 G A ROBO2 Missense_Mutation p.R95Q 0.47 deleterious(0.02) unknown(0) TCGA-VQ-A8P2-01 3 77614212 77614212 C T ROBO2 Missense_Mutation p.A613V 0.52 deleterious(0) possibly_damaging(0.717) TCGA-VQ-A8P2-01 3 77671493 77671493 G A ROBO2 Missense_Mutation p.E1240K 0.40 tolerated(0.08) benign(0.305) TCGA-VQ-A8P2-01 3 78656177 78656177 G A ROBO1 Missense_Mutation p.P1484S 0.49 tolerated_low_confidence(0.16) probably_damaging(0.986) TCGA-VQ-A8P2-01 3 85961556 85961556 G A CADM2 Missense_Mutation p.R181H 0.34 deleterious(0.01) possibly_damaging(0.703) TCGA-VQ-A8P2-01 3 8609249 8609249 C A LMCD1 Missense_Mutation p.L355M 0.37 deleterious(0.03) probably_damaging(0.983) TCGA-VQ-A8P2-01 3 8675603 8675603 G T SSUH2 Intron 0.52 TCGA-VQ-A8P2-01 3 87017790 87017790 C T VGLL3 Missense_Mutation p.G296E 0.21 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8P2-01 3 88202575 88202575 C T C3orf38 Missense_Mutation p.T110M 0.36 deleterious(0.04) benign(0.071) TCGA-VQ-A8P2-01 3 89499363 89499363 C - EPHA3 Frame_Shift_Del p.M847Wfs*10 0.33 TCGA-VQ-A8P2-01 3 9036101 9036101 C T SRGAP3 Silent p.S778S 0.11 TCGA-VQ-A8P2-01 3 93593074 93593074 C T PROS1 3'UTR 0.34 TCGA-VQ-A8P2-01 3 93692540 93692540 C T PROS1 Silent p.V18V 0.59 TCGA-VQ-A8P2-01 3 93733423 93733423 C A STX19 Missense_Mutation p.D231Y 0.31 deleterious(0) probably_damaging(0.984) TCGA-VQ-A8P2-01 3 93780437 93780437 A T DHFRL1 5'UTR 0.46 TCGA-VQ-A8P2-01 3 9488896 9488896 C T SETD5 Missense_Mutation p.P563S 0.35 tolerated(0.4) benign(0.007) TCGA-VQ-A8P2-01 3 9506208 9506208 C T SETD5 Missense_Mutation p.P859L 0.46 deleterious(0) benign(0.05) TCGA-VQ-A8P2-01 3 9506309 9506309 A G SETD5 Missense_Mutation p.T893A 0.44 tolerated(0.06) benign(0.001) TCGA-VQ-A8P2-01 3 9512279 9512279 C T SETD5 Missense_Mutation p.S954F 0.38 deleterious(0) benign(0.303) TCGA-VQ-A8P2-01 3 9711165 9711165 C T MTMR14 Silent p.D181D 0.41 TCGA-VQ-A8P2-01 3 97664644 97664644 C T MINA Missense_Mutation p.E413K 0.36 tolerated(0.26) benign(0.005) TCGA-VQ-A8P2-01 3 9780815 9780815 C A BRPF1 Silent p.I244I 0.56 TCGA-VQ-A8P2-01 3 9783714 9783714 G T BRPF1 Missense_Mutation p.K620N 0.16 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8P2-01 3 97887686 97887686 T C OR5H15 Missense_Mutation p.V48A 0.33 deleterious(0) benign(0.016) TCGA-VQ-A8P2-01 3 97983375 97983375 G T OR5H6 Missense_Mutation p.A83S 0.36 deleterious(0) benign(0.196) TCGA-VQ-A8P2-01 3 9807532 9807532 C T OGG1 Missense_Mutation p.R330C 0.48 deleterious(0) benign(0.095) TCGA-VQ-A8P2-01 3 98109592 98109592 T A OR5K3 Missense_Mutation p.F28Y 0.39 deleterious(0) possibly_damaging(0.838) TCGA-VQ-A8P2-01 3 9825701 9825701 C T TADA3 Intron 0.37 TCGA-VQ-A8P2-01 3 9847917 9847917 C T ARPC4 3'UTR 0.42 TCGA-VQ-A8P2-01 3 9867556 9867556 C T TTLL3 Silent p.A409A 0.44 TCGA-VQ-A8P2-01 3 9911575 9911575 C T CIDEC Missense_Mutation p.R192H 0.34 tolerated(0.08) benign(0.021) TCGA-VQ-A8P2-01 3 99514534 99514534 C - COL8A1 Frame_Shift_Del p.H599Mfs*24 0.38 TCGA-VQ-A8P2-01 3 9953226 9953226 G A IL17RE Missense_Mutation p.S391N 0.38 tolerated(0.32) benign(0.029) TCGA-VQ-A8P2-01 3 9969997 9969997 G A IL17RC Missense_Mutation p.A367T 0.47 deleterious(0.01) possibly_damaging(0.891) TCGA-VQ-A8P2-01 3 9971775 9971775 G T IL17RC Missense_Mutation p.R478I 0.35 tolerated(0.43) benign(0.017) TCGA-VQ-A8P2-01 4 100340190 100340190 G A ADH7 Missense_Mutation p.P325L 0.17 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8P2-01 4 100532310 100532310 C T MTTP Missense_Mutation p.R594C 0.37 deleterious(0) possibly_damaging(0.582) TCGA-VQ-A8P2-01 4 100826812 100826812 C T DNAJB14 Missense_Mutation p.V262M 0.27 deleterious(0) possibly_damaging(0.766) TCGA-VQ-A8P2-01 4 102015024 102015024 G T PPP3CA Missense_Mutation p.L231M 0.10 deleterious(0.02) possibly_damaging(0.738) TCGA-VQ-A8P2-01 4 102984241 102984241 C T BANK1 Nonsense_Mutation p.R720* 0.42 TCGA-VQ-A8P2-01 4 103236889 103236889 C A SLC39A8 Missense_Mutation p.Q106H 0.15 deleterious(0.05) benign(0.029) TCGA-VQ-A8P2-01 4 103537599 103537599 C T NFKB1 Nonsense_Mutation p.R920* 0.41 TCGA-VQ-A8P2-01 4 103611920 103611920 C T MANBA Missense_Mutation p.A228T 0.43 tolerated(0.63) benign(0.002) TCGA-VQ-A8P2-01 4 10445860 10445860 C T ZNF518B Missense_Mutation p.G698E 0.11 tolerated(1) benign(0.001) TCGA-VQ-A8P2-01 4 105393493 105393493 G A CXXC4 Nonsense_Mutation p.R364* 0.37 TCGA-VQ-A8P2-01 4 106156977 106156977 G T TET2 Missense_Mutation p.Q626H 0.14 deleterious(0.03) benign(0.016) TCGA-VQ-A8P2-01 4 106640591 106640591 C T GSTCD Silent p.A267A 0.35 TCGA-VQ-A8P2-01 4 1066664 1066664 A G RNF212 Nonstop_Mutation p.*298Rext*5 0.50 TCGA-VQ-A8P2-01 4 107165917 107165917 T C TBCK Missense_Mutation p.I312M 0.41 tolerated(0.23) benign(0.001) TCGA-VQ-A8P2-01 4 108866348 108866348 G A CYP2U1 Missense_Mutation p.G238D 0.08 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 4 109745340 109745340 T C COL25A1 Missense_Mutation p.K612R 0.38 tolerated(1) benign(0.037) TCGA-VQ-A8P2-01 4 110222905 110222905 C A COL25A1 Nonsense_Mutation p.E91* 0.16 TCGA-VQ-A8P2-01 4 110268647 110268647 G A SEC24B-AS1 RNA 0.56 TCGA-VQ-A8P2-01 4 110384730 110384730 G A SEC24B Silent p.S269S 0.13 TCGA-VQ-A8P2-01 4 110446025 110446025 G T SEC24B Missense_Mutation p.D854Y 0.35 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 4 110447421 110447421 G A SEC24B Missense_Mutation p.R944H 0.11 deleterious(0) probably_damaging(0.979) TCGA-VQ-A8P2-01 4 110667631 110667631 T C CFI Missense_Mutation p.I392M 0.34 deleterious(0.03) probably_damaging(0.947) TCGA-VQ-A8P2-01 4 110745141 110745141 G T GAR1 Nonsense_Mutation p.G198* 0.31 TCGA-VQ-A8P2-01 4 110765432 110765432 T C RRH 3'UTR 0.53 TCGA-VQ-A8P2-01 4 110789059 110789059 G T LRIT3 Missense_Mutation p.Q284H 0.34 deleterious(0.02) benign(0.234) TCGA-VQ-A8P2-01 4 110790877 110790877 G A LRIT3 Silent p.G324G 0.08 TCGA-VQ-A8P2-01 4 110791302 110791302 C T LRIT3 Missense_Mutation p.T466I 0.14 tolerated(0.19) benign(0.017) TCGA-VQ-A8P2-01 4 113356304 113356304 G A ALPK1 Missense_Mutation p.S1012N 0.32 tolerated(0.6) benign(0.001) TCGA-VQ-A8P2-01 4 113435853 113435853 C T NEUROG2 Missense_Mutation p.R260H 0.55 deleterious_low_confidence(0) possibly_damaging(0.662) TCGA-VQ-A8P2-01 4 113436261 113436261 C T NEUROG2 Missense_Mutation p.R124H 0.33 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8P2-01 4 11401383 11401383 C T HS3ST1 Missense_Mutation p.A83T 0.46 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 4 114278087 114278087 C T ANK2 Silent p.I2771I 0.42 TCGA-VQ-A8P2-01 4 114288750 114288750 C T ANK2 Silent p.C3687C 0.42 TCGA-VQ-A8P2-01 4 114823493 114823494 - T ARSJ Frame_Shift_Ins p.K580Efs*32 0.40 TCGA-VQ-A8P2-01 4 114900035 114900035 C T ARSJ 5'UTR 0.57 TCGA-VQ-A8P2-01 4 115997356 115997356 C T NDST4 Silent p.L279L 0.08 TCGA-VQ-A8P2-01 4 118005789 118005789 G A TRAM1L1 Missense_Mutation p.A254V 0.42 deleterious(0.02) benign(0.049) TCGA-VQ-A8P2-01 4 118975752 118975752 C A NDST3 Silent p.A229A 0.40 TCGA-VQ-A8P2-01 4 119036032 119036032 A G NDST3 Missense_Mutation p.M381V 0.63 deleterious(0) benign(0.084) TCGA-VQ-A8P2-01 4 119216200 119216200 G A PRSS12 Nonsense_Mutation p.Q645* 0.44 TCGA-VQ-A8P2-01 4 119948591 119948591 C T SYNPO2 Missense_Mutation p.A356V 0.36 deleterious(0) possibly_damaging(0.894) TCGA-VQ-A8P2-01 4 1209967 1209967 G A CTBP1 Missense_Mutation p.R192W 0.44 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 4 122592751 122592751 G A ANXA5 Silent p.T224T 0.35 TCGA-VQ-A8P2-01 4 122604536 122604536 G T ANXA5 Missense_Mutation p.L96M 0.45 deleterious(0.02) probably_damaging(0.99) TCGA-VQ-A8P2-01 4 122747065 122747065 G T BBS7 Missense_Mutation p.L700M 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A8P2-01 4 122833042 122833042 G T TRPC3 Silent p.V516V 0.08 TCGA-VQ-A8P2-01 4 123145714 123145714 T C KIAA1109 Missense_Mutation p.L892P 0.29 possibly_damaging(0.845) TCGA-VQ-A8P2-01 4 123161492 123161492 C A KIAA1109 Missense_Mutation p.S1552Y 0.41 benign(0.1) TCGA-VQ-A8P2-01 4 123178412 123178412 C T KIAA1109 Silent p.S2127S 0.36 TCGA-VQ-A8P2-01 4 123237991 123237991 A G KIAA1109 Silent p.E3548E 0.21 TCGA-VQ-A8P2-01 4 123265650 123265650 T - KIAA1109 Frame_Shift_Del p.F4224Lfs*6 0.09 TCGA-VQ-A8P2-01 4 123302162 123302162 C T ADAD1 Missense_Mutation p.P63L 0.20 tolerated(0.08) benign(0.051) TCGA-VQ-A8P2-01 4 123818826 123818826 T - NUDT6 Frame_Shift_Del p.N169Ifs*30 0.27 TCGA-VQ-A8P2-01 4 1244750 1244750 G A CTBP1 5'Flank 0.25 TCGA-VQ-A8P2-01 4 125590486 125590486 C T ANKRD50 Missense_Mutation p.A1316T 0.39 tolerated_low_confidence(0.59) benign(0) TCGA-VQ-A8P2-01 4 125592579 125592579 G T ANKRD50 Missense_Mutation p.A618D 0.33 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 4 126240700 126240700 G A FAT4 Missense_Mutation p.G1045D 0.33 probably_damaging(1) TCGA-VQ-A8P2-01 4 126242202 126242202 G A FAT4 Missense_Mutation p.V1546I 0.15 benign(0.015) TCGA-VQ-A8P2-01 4 126329756 126329756 G T FAT4 Missense_Mutation p.Q1909H 0.10 probably_damaging(0.948) TCGA-VQ-A8P2-01 4 126337624 126337624 C T FAT4 Nonsense_Mutation p.R2289* 0.09 TCGA-VQ-A8P2-01 4 126372561 126372561 G A FAT4 Missense_Mutation p.V3464I 0.43 possibly_damaging(0.6) TCGA-VQ-A8P2-01 4 126373058 126373058 C T FAT4 Silent p.P3629P 0.44 TCGA-VQ-A8P2-01 4 126373326 126373326 G A FAT4 Missense_Mutation p.V3719I 0.39 benign(0.117) TCGA-VQ-A8P2-01 4 126373398 126373398 G T FAT4 Missense_Mutation p.G3743C 0.38 probably_damaging(0.994) TCGA-VQ-A8P2-01 4 126412361 126412361 T C FAT4 Missense_Mutation p.L4795P 0.39 probably_damaging(0.998) TCGA-VQ-A8P2-01 4 126412419 126412419 T C FAT4 Silent p.S4814S 0.43 TCGA-VQ-A8P2-01 4 128565127 128565127 G A INTU Missense_Mutation p.G200R 0.37 tolerated(0.21) benign(0.031) TCGA-VQ-A8P2-01 4 128628059 128628059 G A INTU Missense_Mutation p.A736T 0.41 tolerated(0.48) benign(0.002) TCGA-VQ-A8P2-01 4 128694618 128694619 - T SLC25A31 Frame_Shift_Ins p.R282Sfs*21 0.25 TCGA-VQ-A8P2-01 4 128803047 128803047 C T PLK4 Missense_Mutation p.S31F 0.49 deleterious(0) probably_damaging(0.974) TCGA-VQ-A8P2-01 4 128817956 128817956 T C PLK4 Silent p.L902L 0.31 TCGA-VQ-A8P2-01 4 129043203 129043203 C T LARP1B Missense_Mutation p.P462S 0.49 deleterious(0.04) benign(0.244) TCGA-VQ-A8P2-01 4 129783140 129783140 G A JADE1 Silent p.Q421Q 0.28 TCGA-VQ-A8P2-01 4 129792673 129792673 T C JADE1 Silent p.H595H 0.44 TCGA-VQ-A8P2-01 4 134071269 134071269 G A PCDH10 5'UTR 0.38 TCGA-VQ-A8P2-01 4 134072279 134072279 G A PCDH10 Silent p.V328V 0.23 TCGA-VQ-A8P2-01 4 134072574 134072574 G A PCDH10 Missense_Mutation p.D427N 0.37 tolerated(0.2) possibly_damaging(0.639) TCGA-VQ-A8P2-01 4 134073815 134073815 C T PCDH10 Silent p.C840C 0.29 TCGA-VQ-A8P2-01 4 13481136 13481136 C T RAB28 Silent p.T30T 0.47 TCGA-VQ-A8P2-01 4 13543820 13543820 C T NKX3-2 Missense_Mutation p.A267T 0.40 tolerated(0.1) probably_damaging(0.987) TCGA-VQ-A8P2-01 4 13601557 13601557 C A BOD1L1 Missense_Mutation p.D2323Y 0.32 probably_damaging(0.969) TCGA-VQ-A8P2-01 4 13601771 13601771 G A BOD1L1 Silent p.D2251D 0.23 TCGA-VQ-A8P2-01 4 13603422 13603422 G A BOD1L1 Missense_Mutation p.S1701F 0.39 probably_damaging(0.999) TCGA-VQ-A8P2-01 4 138442540 138442540 C T PCDH18 Silent p.P1017P 0.41 TCGA-VQ-A8P2-01 4 1388398 1388398 G A CRIPAK Silent p.P33P 0.35 TCGA-VQ-A8P2-01 4 1388594 1388594 C T CRIPAK Missense_Mutation p.H99Y 0.08 tolerated_low_confidence(0.13) benign(0.291) TCGA-VQ-A8P2-01 4 1389077 1389077 G A CRIPAK Missense_Mutation p.A260T 0.30 tolerated(0.33) probably_damaging(0.982) TCGA-VQ-A8P2-01 4 1389110 1389110 C A CRIPAK Missense_Mutation p.L271M 0.10 tolerated(0.19) probably_damaging(0.986) TCGA-VQ-A8P2-01 4 139153476 139153476 A - SLC7A11 Frame_Shift_Del p.F155Lfs*19 0.31 TCGA-VQ-A8P2-01 4 139162993 139162993 G A SLC7A11 Silent p.G77G 0.30 TCGA-VQ-A8P2-01 4 139980217 139980217 C T ELF2 Missense_Mutation p.V556I 0.45 deleterious(0.02) probably_damaging(0.996) TCGA-VQ-A8P2-01 4 139980654 139980654 C A ELF2 Missense_Mutation p.S410I 0.33 tolerated(0.05) benign(0.255) TCGA-VQ-A8P2-01 4 140432959 140432959 C T SETD7 Missense_Mutation p.R320H 0.33 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 4 140468097 140468097 C T SETD7 Silent p.G49G 0.53 TCGA-VQ-A8P2-01 4 140641420 140641420 G A MAML3 Missense_Mutation p.T825M 0.52 possibly_damaging(0.88) TCGA-VQ-A8P2-01 4 140811600 140811600 G A MAML3 Silent p.N330N 0.38 TCGA-VQ-A8P2-01 4 141484497 141484497 G A UCP1 Silent p.T167T 0.35 TCGA-VQ-A8P2-01 4 141484498 141484498 G A UCP1 Missense_Mutation p.T167I 0.36 deleterious(0.03) probably_damaging(1) TCGA-VQ-A8P2-01 4 141592017 141592017 G A TBC1D9 Nonsense_Mutation p.R375* 0.35 TCGA-VQ-A8P2-01 4 142654038 142654038 A G IL15 3'UTR 0.50 TCGA-VQ-A8P2-01 4 142949969 142949969 G T INPP4B Missense_Mutation p.P914H 0.36 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 4 144136041 144136041 C A USP38 Missense_Mutation p.P971H 0.42 tolerated(0.09) probably_damaging(0.971) TCGA-VQ-A8P2-01 4 144442709 144442710 - A SMARCA5 Frame_Shift_Ins p.D130Rfs*2 0.32 TCGA-VQ-A8P2-01 4 144459999 144459999 C T SMARCA5 Missense_Mutation p.R560C 0.52 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 4 144464785 144464785 G A SMARCA5 Missense_Mutation p.G676D 0.39 tolerated(0.41) benign(0) TCGA-VQ-A8P2-01 4 145032439 145032439 C T GYPA 3'UTR 0.33 TCGA-VQ-A8P2-01 4 145629394 145629394 G A HHIP Missense_Mutation p.S411N 0.47 tolerated(0.24) benign(0.006) TCGA-VQ-A8P2-01 4 146044509 146044509 G A ABCE1 Missense_Mutation p.R506H 0.49 deleterious(0.03) possibly_damaging(0.717) TCGA-VQ-A8P2-01 4 146077088 146077088 C T OTUD4 Silent p.E165E 0.41 TCGA-VQ-A8P2-01 4 146560419 146560419 C T MMAA Missense_Mutation p.P43L 0.33 tolerated_low_confidence(0.15) benign(0.003) TCGA-VQ-A8P2-01 4 146653612 146653612 G A C4orf51 Missense_Mutation p.G170E 0.30 tolerated(0.69) benign(0.001) TCGA-VQ-A8P2-01 4 146823878 146823878 T C ZNF827 Missense_Mutation p.E178G 0.31 deleterious(0) benign(0.131) TCGA-VQ-A8P2-01 4 146824080 146824080 C T ZNF827 Missense_Mutation p.D111N 0.32 deleterious(0) benign(0.178) TCGA-VQ-A8P2-01 4 147177532 147177532 A - SLC10A7 3'UTR 0.18 TCGA-VQ-A8P2-01 4 147227161 147227161 G A SLC10A7 Missense_Mutation p.L158F 0.14 deleterious(0.01) possibly_damaging(0.596) TCGA-VQ-A8P2-01 4 147442907 147442908 - T SLC10A7 5'UTR 0.32 TCGA-VQ-A8P2-01 4 148461086 148461086 C T EDNRA Nonsense_Mutation p.R340* 0.09 TCGA-VQ-A8P2-01 4 148539115 148539115 G T TMEM184C Missense_Mutation p.C3F 0.40 deleterious(0) benign(0.041) TCGA-VQ-A8P2-01 4 148601489 148601489 C T PRMT10 Missense_Mutation p.G108E 0.17 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 4 15067972 15067972 C T CPEB2 Missense_Mutation p.R1025C 0.46 deleterious_low_confidence(0) probably_damaging(1) TCGA-VQ-A8P2-01 4 151504301 151504301 C T MAB21L2 Silent p.D40D 0.26 TCGA-VQ-A8P2-01 4 151504638 151504638 G A MAB21L2 Missense_Mutation p.A153T 0.41 tolerated(0.39) benign(0.009) TCGA-VQ-A8P2-01 4 151827096 151827096 G A LRBA Missense_Mutation p.A550V 0.41 tolerated(0.13) benign(0.009) TCGA-VQ-A8P2-01 4 152203322 152203322 A G PRSS48 Missense_Mutation p.T80A 0.41 deleterious(0.03) benign(0.009) TCGA-VQ-A8P2-01 4 153247366 153247366 C T FBXW7 Missense_Mutation p.R479Q 0.22 deleterious(0.03) probably_damaging(1) TCGA-VQ-A8P2-01 4 153573844 153573844 G A TMEM154 Silent p.Y100Y 0.20 TCGA-VQ-A8P2-01 4 154524579 154524579 G T KIAA0922 Missense_Mutation p.D922Y 0.28 deleterious(0) probably_damaging(0.985) TCGA-VQ-A8P2-01 4 154625491 154625491 C T TLR2 Nonsense_Mutation p.Q478* 0.12 TCGA-VQ-A8P2-01 4 154641388 154641388 A G RNF175 Missense_Mutation p.M193T 0.38 deleterious(0.03) probably_damaging(0.985) TCGA-VQ-A8P2-01 4 154669871 154669871 T A RNF175 Missense_Mutation p.I58F 0.38 deleterious(0.01) benign(0.261) TCGA-VQ-A8P2-01 4 15504529 15504529 A G CC2D2A Missense_Mutation p.T141A 0.46 deleterious_low_confidence(0.03) possibly_damaging(0.792) TCGA-VQ-A8P2-01 4 155156559 155156559 A C DCHS2 Missense_Mutation p.I2627S 0.37 tolerated(0.71) benign(0.008) TCGA-VQ-A8P2-01 4 155180843 155180843 C T DCHS2 Missense_Mutation p.V1760I 0.15 tolerated(0.24) benign(0.144) TCGA-VQ-A8P2-01 4 155241980 155241980 G A DCHS2 Missense_Mutation p.P1069L 0.55 deleterious(0) probably_damaging(0.986) TCGA-VQ-A8P2-01 4 155253858 155253858 C T DCHS2 Missense_Mutation p.G669R 0.39 tolerated(0.92) benign(0.001) TCGA-VQ-A8P2-01 4 155457860 155457860 T G PLRG1 Missense_Mutation p.I508L 0.13 tolerated(0.7) benign(0.049) TCGA-VQ-A8P2-01 4 155530892 155530892 C T FGG Missense_Mutation p.G186R 0.16 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 4 155665779 155665779 G A LRAT Missense_Mutation p.V101I 0.37 deleterious(0.01) probably_damaging(0.975) TCGA-VQ-A8P2-01 4 155670295 155670296 - C LRAT 3'UTR 0.29 TCGA-VQ-A8P2-01 4 156751005 156751005 C T ASIC5 3'UTR 0.33 TCGA-VQ-A8P2-01 4 156787422 156787422 T C ASIC5 5'UTR 0.11 TCGA-VQ-A8P2-01 4 156839334 156839334 G A TDO2 Missense_Mutation p.G337D 0.11 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 4 15706557 15706557 G A BST1 Intron 0.44 TCGA-VQ-A8P2-01 4 15707179 15707179 C T BST1 Missense_Mutation p.A77V 0.39 tolerated(0.64) benign(0.001) TCGA-VQ-A8P2-01 4 158057752 158057753 - T GLRB Frame_Shift_Ins p.A146Cfs*3 0.29 TCGA-VQ-A8P2-01 4 159629753 159629753 T C ETFDH 3'UTR 0.40 TCGA-VQ-A8P2-01 4 159642600 159642600 C T PPID Missense_Mutation p.V41I 0.40 deleterious(0.02) possibly_damaging(0.509) TCGA-VQ-A8P2-01 4 159754753 159754753 G A FNIP2 Missense_Mutation p.G210S 0.36 tolerated(0.12) benign(0.139) TCGA-VQ-A8P2-01 4 159790071 159790071 G A FNIP2 Silent p.P761P 0.41 TCGA-VQ-A8P2-01 4 159956245 159956245 C T C4orf45 Missense_Mutation p.A2T 0.38 tolerated_low_confidence(0.23) benign(0.084) TCGA-VQ-A8P2-01 4 160243619 160243620 - A RAPGEF2 Frame_Shift_Ins p.N165Kfs*2 0.31 TCGA-VQ-A8P2-01 4 160271298 160271298 C A RAPGEF2 Missense_Mutation p.S1080Y 0.13 deleterious(0) possibly_damaging(0.769) TCGA-VQ-A8P2-01 4 162307286 162307286 C A FSTL5 Missense_Mutation p.Q719H 0.16 deleterious(0) probably_damaging(0.976) TCGA-VQ-A8P2-01 4 162841688 162841688 A - FSTL5 Frame_Shift_Del p.C93Afs*28 0.27 TCGA-VQ-A8P2-01 4 164069587 164069587 C A NAF1 Splice_Site p.X181_splice 0.48 TCGA-VQ-A8P2-01 4 16504149 16504149 A C LDB2 3'UTR 0.53 TCGA-VQ-A8P2-01 4 16504316 16504316 C T LDB2 Missense_Mutation p.A358T 0.42 tolerated(0.24) benign(0.002) TCGA-VQ-A8P2-01 4 16504399 16504399 G A LDB2 Missense_Mutation p.A330V 0.42 tolerated(0.06) possibly_damaging(0.612) TCGA-VQ-A8P2-01 4 165962448 165962448 A G TRIM60 Silent p.P408P 0.31 TCGA-VQ-A8P2-01 4 169194527 169194527 G A DDX60 Missense_Mutation p.A826V 0.33 deleterious(0) probably_damaging(0.964) TCGA-VQ-A8P2-01 4 169300533 169300533 G T DDX60L Silent p.L1448L 0.35 TCGA-VQ-A8P2-01 4 169432870 169432870 C A PALLD Missense_Mutation p.P72H 0.38 deleterious(0.01) benign(0.01) TCGA-VQ-A8P2-01 4 170028346 170028346 T - SH3RF1 Frame_Shift_Del p.K717Rfs*4 0.22 TCGA-VQ-A8P2-01 4 170315643 170315644 - A NEK1 3'UTR 0.19 TCGA-VQ-A8P2-01 4 170625194 170625194 G A CLCN3 Missense_Mutation p.A537T 0.42 tolerated(0.46) benign(0.44) TCGA-VQ-A8P2-01 4 170652929 170652929 G A C4orf27 Nonsense_Mutation p.Q279* 0.33 TCGA-VQ-A8P2-01 4 171009688 171009688 G A AADAT Missense_Mutation p.S32L 0.38 deleterious(0.01) benign(0.259) TCGA-VQ-A8P2-01 4 1730153 1730153 G A TACC3 Missense_Mutation p.V342I 0.20 deleterious(0.02) benign(0.008) TCGA-VQ-A8P2-01 4 1739044 1739044 C T TACC3 Silent p.L609L 0.47 TCGA-VQ-A8P2-01 4 174450113 174450113 G A HAND2 Missense_Mutation p.R110C 0.32 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8P2-01 4 174450172 174450172 G - HAND2 Frame_Shift_Del p.P90Rfs*9 0.30 TCGA-VQ-A8P2-01 4 175158646 175158646 G A FBXO8 Missense_Mutation p.R293C 0.27 deleterious(0.02) possibly_damaging(0.761) TCGA-VQ-A8P2-01 4 175231080 175231080 C T CEP44 Missense_Mutation p.S253L 0.14 tolerated(0.71) benign(0) TCGA-VQ-A8P2-01 4 175413246 175413246 C T HPGD Splice_Site p.X221_splice 0.24 TCGA-VQ-A8P2-01 4 175565101 175565101 G A GLRA3 Missense_Mutation p.P411S 0.31 tolerated(0.57) benign(0.004) TCGA-VQ-A8P2-01 4 175603983 175603983 A G GLRA3 Silent p.L228L 0.44 TCGA-VQ-A8P2-01 4 17590491 17590491 G A LAP3 Missense_Mutation p.A252T 0.45 tolerated(0.22) possibly_damaging(0.562) TCGA-VQ-A8P2-01 4 177136814 177136814 T A ASB5 Missense_Mutation p.R309S 0.31 tolerated(0.06) possibly_damaging(0.788) TCGA-VQ-A8P2-01 4 177649031 177649031 G T VEGFC Missense_Mutation p.F151L 0.28 tolerated(0.06) possibly_damaging(0.526) TCGA-VQ-A8P2-01 4 17805013 17805013 G T DCAF16 3'UTR 0.60 TCGA-VQ-A8P2-01 4 183664409 183664409 C T TENM3 Missense_Mutation p.R1156C 0.13 deleterious(0) benign(0.095) TCGA-VQ-A8P2-01 4 183673005 183673005 C A TENM3 Missense_Mutation p.L1228M 0.53 deleterious(0) benign(0.165) TCGA-VQ-A8P2-01 4 184182476 184182476 C T WWC2 Missense_Mutation p.T567M 0.27 tolerated(0.15) possibly_damaging(0.587) TCGA-VQ-A8P2-01 4 184570717 184570717 G A RWDD4 Missense_Mutation p.S123L 0.42 tolerated(0.28) benign(0.002) TCGA-VQ-A8P2-01 4 184587557 184587557 G A TRAPPC11 Missense_Mutation p.A118T 0.33 deleterious(0.01) possibly_damaging(0.499) TCGA-VQ-A8P2-01 4 185309909 185309909 G T IRF2 3'UTR 0.38 TCGA-VQ-A8P2-01 4 185320176 185320176 G A IRF2 Missense_Mutation p.P196L 0.35 tolerated(0.64) probably_damaging(0.998) TCGA-VQ-A8P2-01 4 185339823 185339824 - T IRF2 Frame_Shift_Ins p.T76Nfs*15 0.29 TCGA-VQ-A8P2-01 4 185687872 185687872 G A ACSL1 Silent p.L389L 0.38 TCGA-VQ-A8P2-01 4 185940071 185940071 G A HELT 5'Flank 0.14 TCGA-VQ-A8P2-01 4 186244919 186244919 C T SNX25 Missense_Mutation p.H408Y 0.53 tolerated(0.58) benign(0) TCGA-VQ-A8P2-01 4 186379290 186379290 C T CCDC110 Silent p.S817S 0.09 TCGA-VQ-A8P2-01 4 186544086 186544086 G A SORBS2 Missense_Mutation p.R929C 0.08 tolerated(0.08) benign(0.429) TCGA-VQ-A8P2-01 4 186544241 186544241 G A SORBS2 Missense_Mutation p.A877V 0.08 tolerated(0.27) benign(0.015) TCGA-VQ-A8P2-01 4 186544622 186544622 T C SORBS2 Missense_Mutation p.H750R 0.37 deleterious(0.01) probably_damaging(0.995) TCGA-VQ-A8P2-01 4 186998142 186998142 G A TLR3 Silent p.T123T 0.12 TCGA-VQ-A8P2-01 4 187075712 187075712 G A FAM149A Silent p.T101T 0.34 TCGA-VQ-A8P2-01 4 187540840 187540840 C T FAT1 Silent p.T2300T 0.25 TCGA-VQ-A8P2-01 4 187554884 187554884 T C FAT1 Missense_Mutation p.N1426S 0.07 benign(0.053) TCGA-VQ-A8P2-01 4 189026087 189026087 C A TRIML2 Splice_Site p.X14_splice 0.15 TCGA-VQ-A8P2-01 4 189064958 189064958 G A TRIML1 Intron 0.08 TCGA-VQ-A8P2-01 4 189068521 189068521 G A TRIML1 Missense_Mutation p.V468I 0.13 tolerated_low_confidence(0.24) benign(0.001) TCGA-VQ-A8P2-01 4 189068552 189068552 G A TRIML1 3'UTR 0.31 TCGA-VQ-A8P2-01 4 1936883 1936883 G A WHSC1 Missense_Mutation p.G523E 0.46 tolerated(0.36) possibly_damaging(0.691) TCGA-VQ-A8P2-01 4 1941505 1941505 G T WHSC1 Missense_Mutation p.E627D 0.11 tolerated(0.63) possibly_damaging(0.876) TCGA-VQ-A8P2-01 4 1957040 1957040 G A WHSC1 Missense_Mutation p.V831M 0.58 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 4 20533609 20533609 G A SLIT2 Missense_Mutation p.R539H 0.16 tolerated(0.06) probably_damaging(0.988) TCGA-VQ-A8P2-01 4 20619098 20619098 C A SLIT2 Missense_Mutation p.F1391L 0.47 tolerated(0.76) benign(0.086) TCGA-VQ-A8P2-01 4 20620480 20620480 T A SLIT2 Missense_Mutation p.L1480I 0.49 tolerated(0.13) probably_damaging(0.985) TCGA-VQ-A8P2-01 4 2306064 2306064 G A ZFYVE28 Missense_Mutation p.A668V 0.32 tolerated_low_confidence(0.23) benign(0.028) TCGA-VQ-A8P2-01 4 25416255 25416256 - T ANAPC4 Frame_Shift_Ins p.T589Yfs*9 0.32 TCGA-VQ-A8P2-01 4 25665876 25665876 G A SLC34A2 Silent p.L101L 0.09 TCGA-VQ-A8P2-01 4 25678148 25678148 G A SLC34A2 Missense_Mutation p.R617H 0.49 tolerated(0.09) benign(0.005) TCGA-VQ-A8P2-01 4 25678188 25678188 C A SLC34A2 Nonsense_Mutation p.C630* 0.15 TCGA-VQ-A8P2-01 4 26487493 26487493 T A CCKAR Missense_Mutation p.N131I 0.23 deleterious(0) probably_damaging(0.974) TCGA-VQ-A8P2-01 4 265291 265291 C T ZNF732 Missense_Mutation p.G452D 0.41 deleterious(0.03) benign(0.012) TCGA-VQ-A8P2-01 4 26675452 26675452 C T TBC1D19 Missense_Mutation p.P253L 0.34 deleterious(0) possibly_damaging(0.543) TCGA-VQ-A8P2-01 4 2746573 2746573 C T TNIP2 Missense_Mutation p.E253K 0.34 tolerated(0.1) possibly_damaging(0.898) TCGA-VQ-A8P2-01 4 2934851 2934851 C T MFSD10 Silent p.P118P 0.30 TCGA-VQ-A8P2-01 4 3030968 3030968 C T GRK4 Silent p.P367P 0.28 TCGA-VQ-A8P2-01 4 3031025 3031026 - A GRK4 Frame_Shift_Ins p.Y389Ifs*17 0.31 TCGA-VQ-A8P2-01 4 337631 337631 G A ZNF141 Missense_Mutation p.D22N 0.11 tolerated(0.06) probably_damaging(0.945) TCGA-VQ-A8P2-01 4 3432557 3432557 A G RGS12 Missense_Mutation p.Q1330R 0.26 tolerated(0.23) benign(0.219) TCGA-VQ-A8P2-01 4 3449218 3449219 - C HGFAC Frame_Shift_Ins p.R455Qfs*91 0.32 TCGA-VQ-A8P2-01 4 36122811 36122811 T C ARAP2 Missense_Mutation p.E1295G 0.49 tolerated(0.12) benign(0.09) TCGA-VQ-A8P2-01 4 36212091 36212091 T C ARAP2 Missense_Mutation p.I470V 0.38 deleterious(0) possibly_damaging(0.833) TCGA-VQ-A8P2-01 4 37841726 37841726 C T PGM2 Silent p.H188H 0.39 TCGA-VQ-A8P2-01 4 38690343 38690343 G A KLF3 Silent p.T65T 0.33 TCGA-VQ-A8P2-01 4 38774969 38774969 A G TLR10 Missense_Mutation p.L748P 0.18 deleterious(0) probably_damaging(0.973) TCGA-VQ-A8P2-01 4 38775827 38775827 G T TLR10 Missense_Mutation p.T462N 0.13 deleterious(0) benign(0.052) TCGA-VQ-A8P2-01 4 38910258 38910258 G A FAM114A1 Missense_Mutation p.G235S 0.15 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 4 39310612 39310612 T - RFC1 Frame_Shift_Del p.N510Mfs*33 0.24 TCGA-VQ-A8P2-01 4 39449942 39449942 G T KLB Missense_Mutation p.R924I 0.42 deleterious(0) benign(0.251) TCGA-VQ-A8P2-01 4 39507272 39507272 C T UGDH Missense_Mutation p.G335R 0.24 deleterious(0) probably_damaging(0.913) TCGA-VQ-A8P2-01 4 39827098 39827098 T C PDS5A 3'UTR 0.67 TCGA-VQ-A8P2-01 4 39864604 39864604 G A PDS5A Silent p.I952I 0.40 TCGA-VQ-A8P2-01 4 39978078 39978078 C A PDS5A Missense_Mutation p.E40D 0.08 tolerated(0.13) probably_damaging(0.999) TCGA-VQ-A8P2-01 4 40108591 40108591 A G N4BP2 Missense_Mutation p.Y482C 0.39 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 4 40133497 40133497 C T N4BP2 Missense_Mutation p.A1535V 0.08 deleterious(0.01) benign(0.21) TCGA-VQ-A8P2-01 4 40351284 40351284 A G CHRNA9 Missense_Mutation p.I251V 0.14 tolerated(0.08) possibly_damaging(0.812) TCGA-VQ-A8P2-01 4 40440380 40440380 G A RBM47 Silent p.G177G 0.37 TCGA-VQ-A8P2-01 4 41747863 41747863 G A PHOX2B Silent p.N302N 0.50 TCGA-VQ-A8P2-01 4 41941381 41941381 A G TMEM33 Silent p.V103V 0.40 TCGA-VQ-A8P2-01 4 41983854 41983855 - A DCAF4L1 Frame_Shift_Ins p.V18Gfs*7 0.24 TCGA-VQ-A8P2-01 4 4198966 4198966 C T OTOP1 Missense_Mutation p.R532H 0.28 tolerated(0.46) benign(0.011) TCGA-VQ-A8P2-01 4 42145792 42145792 A G BEND4 Missense_Mutation p.M236T 0.12 tolerated_low_confidence(0.38) benign(0.057) TCGA-VQ-A8P2-01 4 4214666 4214666 C A OTOP1 Nonsense_Mutation p.G157* 0.10 TCGA-VQ-A8P2-01 4 42580282 42580282 T G ATP8A1 Missense_Mutation p.N375H 0.23 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 4 435947 435947 C A ZNF721 Missense_Mutation p.R770I 0.26 tolerated(0.27) benign(0.02) TCGA-VQ-A8P2-01 4 436696 436696 C T ZNF721 Silent p.R520R 0.38 TCGA-VQ-A8P2-01 4 438178 438178 C T ZNF721 Silent p.G26G 0.39 TCGA-VQ-A8P2-01 4 44176847 44176847 C T KCTD8 Missense_Mutation p.R461H 0.26 tolerated(0.15) probably_damaging(0.98) TCGA-VQ-A8P2-01 4 44449879 44449879 C T KCTD8 Missense_Mutation p.R221H 0.31 deleterious(0) probably_damaging(0.987) TCGA-VQ-A8P2-01 4 44692743 44692744 - A GUF1 Frame_Shift_Ins p.E451Rfs*13 0.20 TCGA-VQ-A8P2-01 4 46263958 46263958 A T GABRA2 Missense_Mutation p.S348R 0.47 tolerated(0.25) benign(0.049) TCGA-VQ-A8P2-01 4 47538839 47538839 A G ATP10D Missense_Mutation p.E427G 0.39 deleterious(0) probably_damaging(0.979) TCGA-VQ-A8P2-01 4 47563007 47563007 T - ATP10D Frame_Shift_Del p.L863* 0.27 TCGA-VQ-A8P2-01 4 47896256 47896256 G A NFXL1 Silent p.L465L 0.47 TCGA-VQ-A8P2-01 4 47939172 47939172 T - CNGA1 Frame_Shift_Del p.T516Qfs*8 0.12 TCGA-VQ-A8P2-01 4 48027093 48027093 C T NIPAL1 Silent p.L19L 0.57 TCGA-VQ-A8P2-01 4 48486088 48486088 G A SLC10A4 Silent p.A170A 0.41 TCGA-VQ-A8P2-01 4 48524973 48524973 G A FRYL Missense_Mutation p.S2489F 0.07 deleterious(0.01) probably_damaging(0.997) TCGA-VQ-A8P2-01 4 48542948 48542948 T - FRYL Frame_Shift_Del p.N1906Tfs*15 0.29 TCGA-VQ-A8P2-01 4 48569288 48569288 G A FRYL Missense_Mutation p.A1049V 0.28 tolerated(0.11) probably_damaging(0.959) TCGA-VQ-A8P2-01 4 4864564 4864564 C T MSX1 Silent p.R202R 0.16 TCGA-VQ-A8P2-01 4 501335 501335 G A PIGG Missense_Mutation p.E238K 0.30 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 4 52861790 52861790 G A LRRC66 Silent p.H466H 0.28 TCGA-VQ-A8P2-01 4 52883710 52883710 C T LRRC66 Missense_Mutation p.A24T 0.38 tolerated(0.36) benign(0.003) TCGA-VQ-A8P2-01 4 52899799 52899799 G A SGCB Missense_Mutation p.S14F 0.37 deleterious_low_confidence(0) possibly_damaging(0.564) TCGA-VQ-A8P2-01 4 52948614 52948614 G A SPATA18 Missense_Mutation p.A473T 0.38 deleterious(0.01) probably_damaging(0.981) TCGA-VQ-A8P2-01 4 53494205 53494205 C T USP46 Silent p.A81A 0.42 TCGA-VQ-A8P2-01 4 53728734 53728734 G A RASL11B Silent p.A20A 0.24 TCGA-VQ-A8P2-01 4 54256014 54256014 C T FIP1L1 Missense_Mutation p.T124I 0.15 deleterious(0.01) benign(0.183) TCGA-VQ-A8P2-01 4 54966538 54966538 G A GSX2 Silent p.S9S 0.54 TCGA-VQ-A8P2-01 4 55155048 55155048 C T PDGFRA Silent p.D919D 0.30 TCGA-VQ-A8P2-01 4 5527199 5527199 C T C4orf6 Missense_Mutation p.R48W 0.30 benign(0.13) TCGA-VQ-A8P2-01 4 55602713 55602713 T C KIT Missense_Mutation p.V845A 0.06 deleterious(0.03) benign(0.073) TCGA-VQ-A8P2-01 4 55991433 55991433 C T KDR Missense_Mutation p.A10T 0.39 tolerated(0.44) benign(0.073) TCGA-VQ-A8P2-01 4 56230357 56230357 G A SRD5A3 Missense_Mutation p.V161M 0.11 deleterious(0.01) possibly_damaging(0.629) TCGA-VQ-A8P2-01 4 5624599 5624599 C A EVC2 Missense_Mutation p.E722D 0.33 deleterious(0.02) possibly_damaging(0.708) TCGA-VQ-A8P2-01 4 56345813 56345813 G A CLOCK Missense_Mutation p.A34V 0.28 deleterious(0) possibly_damaging(0.796) TCGA-VQ-A8P2-01 4 56736963 56736963 G A EXOC1 Missense_Mutation p.M241I 0.36 tolerated(1) benign(0.262) TCGA-VQ-A8P2-01 4 56756467 56756467 G A EXOC1 Missense_Mutation p.R485H 0.41 tolerated(0.09) probably_damaging(0.938) TCGA-VQ-A8P2-01 4 56770542 56770542 C T EXOC1 Missense_Mutation p.R856C 0.38 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8P2-01 4 56878114 56878114 G A CEP135 Missense_Mutation p.R922Q 0.26 tolerated(0.07) probably_damaging(0.953) TCGA-VQ-A8P2-01 4 57262801 57262801 G A PPAT Silent p.H447H 0.43 TCGA-VQ-A8P2-01 4 57777582 57777582 G A REST Missense_Mutation p.E260K 0.14 tolerated(0.29) probably_damaging(0.982) TCGA-VQ-A8P2-01 4 5785417 5785417 C T EVC Nonsense_Mutation p.Q568* 0.42 TCGA-VQ-A8P2-01 4 57888332 57888332 G A POLR2B Missense_Mutation p.R812H 0.22 deleterious(0) probably_damaging(0.989) TCGA-VQ-A8P2-01 4 62758431 62758431 G A LPHN3 Missense_Mutation p.R445Q 0.09 tolerated(0.46) benign(0.021) TCGA-VQ-A8P2-01 4 6293076 6293076 G A WFS1 Missense_Mutation p.G205S 0.48 tolerated(0.48) probably_damaging(0.918) TCGA-VQ-A8P2-01 4 6303573 6303573 C T WFS1 Missense_Mutation p.A684V 0.42 deleterious(0) probably_damaging(0.992) TCGA-VQ-A8P2-01 4 652754 652754 G A PDE6B Missense_Mutation p.R472H 0.46 tolerated(0.24) benign(0.27) TCGA-VQ-A8P2-01 4 657963 657963 C T PDE6B Silent p.S694S 0.14 TCGA-VQ-A8P2-01 4 66535351 66535351 C T EPHA5 Missense_Mutation p.R37Q 0.33 tolerated(0.34) benign(0.002) TCGA-VQ-A8P2-01 4 68484760 68484760 C T UBA6 Silent p.L1038L 0.40 TCGA-VQ-A8P2-01 4 68496240 68496240 G T UBA6 Missense_Mutation p.L758I 0.42 tolerated(1) benign(0) TCGA-VQ-A8P2-01 4 6873394 6873394 G A KIAA0232 Missense_Mutation p.A1299T 0.49 tolerated_low_confidence(0.19) benign(0.002) TCGA-VQ-A8P2-01 4 68928536 68928536 C T TMPRSS11F Intron 0.13 TCGA-VQ-A8P2-01 4 68928546 68928546 C T TMPRSS11F Intron 0.40 TCGA-VQ-A8P2-01 4 69101882 69101882 T C TMPRSS11B Missense_Mutation p.D76G 0.17 tolerated(0.29) benign(0.341) TCGA-VQ-A8P2-01 4 69179911 69179911 C T YTHDC1 Missense_Mutation p.R697K 0.47 deleterious_low_confidence(0) unknown(0) TCGA-VQ-A8P2-01 4 69203417 69203417 G A YTHDC1 Missense_Mutation p.A111V 0.12 deleterious_low_confidence(0.02) unknown(0) TCGA-VQ-A8P2-01 4 6925449 6925449 G A TBC1D14 Silent p.A111A 0.47 TCGA-VQ-A8P2-01 4 69512929 69512929 C A UGT2B15 Missense_Mutation p.A496S 0.37 deleterious(0) benign(0.314) TCGA-VQ-A8P2-01 4 69696453 69696453 C T UGT2B10 Silent p.N481N 0.09 TCGA-VQ-A8P2-01 4 69962817 69962817 C T UGT2B7 Silent p.Y193Y 0.45 TCGA-VQ-A8P2-01 4 70146580 70146580 A G UGT2B28 Missense_Mutation p.D121G 0.44 tolerated(0.12) benign(0.012) TCGA-VQ-A8P2-01 4 70355227 70355227 G A UGT2B4 Missense_Mutation p.S311L 0.06 deleterious(0) possibly_damaging(0.905) TCGA-VQ-A8P2-01 4 7056396 7056396 G A TADA2B Missense_Mutation p.R293Q 0.37 deleterious(0.01) benign(0.154) TCGA-VQ-A8P2-01 4 7069755 7069755 G A GRPEL1 Missense_Mutation p.A2V 0.25 deleterious(0.04) probably_damaging(0.986) TCGA-VQ-A8P2-01 4 70921306 70921306 G A HTN1 3'UTR 0.40 TCGA-VQ-A8P2-01 4 71527816 71527816 G A IGJ Nonsense_Mutation p.R61* 0.39 TCGA-VQ-A8P2-01 4 72623795 72623795 G T GC Nonsense_Mutation p.C284* 0.33 TCGA-VQ-A8P2-01 4 72897572 72897572 G A NPFFR2 5'UTR 0.56 TCGA-VQ-A8P2-01 4 72897733 72897733 C T NPFFR2 Missense_Mutation p.R39C 0.42 tolerated_low_confidence(0.06) benign(0.001) TCGA-VQ-A8P2-01 4 73178013 73178013 G T ADAMTS3 Missense_Mutation p.P639H 0.17 tolerated(0.22) benign(0.014) TCGA-VQ-A8P2-01 4 73414389 73414389 G A ADAMTS3 Missense_Mutation p.P104S 0.42 deleterious(0) possibly_damaging(0.688) TCGA-VQ-A8P2-01 4 73414490 73414490 G A ADAMTS3 Missense_Mutation p.A70V 0.43 tolerated(0.37) benign(0.033) TCGA-VQ-A8P2-01 4 74021480 74021480 G A ANKRD17 Missense_Mutation p.H290Y 0.41 probably_damaging(0.95) TCGA-VQ-A8P2-01 4 74301956 74301956 C T AFP 5'UTR 0.08 TCGA-VQ-A8P2-01 4 75167509 75167509 A - MTHFD2L Frame_Shift_Del p.I345Sfs*48 0.35 TCGA-VQ-A8P2-01 4 759929 759929 G A PCGF3 3'UTR 0.40 TCGA-VQ-A8P2-01 4 76452235 76452235 C T THAP6 Silent p.G160G 0.28 TCGA-VQ-A8P2-01 4 76797689 76797689 C T PPEF2 Silent p.S357S 0.26 TCGA-VQ-A8P2-01 4 76924816 76924817 - T CXCL9 Frame_Shift_Ins p.H105Tfs*51 0.26 TCGA-VQ-A8P2-01 4 77003646 77003646 A G ART3 Missense_Mutation p.I247V 0.37 tolerated(0.07) benign(0.043) TCGA-VQ-A8P2-01 4 77274319 77274319 C T CCDC158 Missense_Mutation p.R801H 0.33 tolerated(0.07) probably_damaging(0.993) TCGA-VQ-A8P2-01 4 77288456 77288456 C A CCDC158 Missense_Mutation p.K607N 0.32 deleterious(0) benign(0.003) TCGA-VQ-A8P2-01 4 77305475 77305475 C T CCDC158 Missense_Mutation p.M164I 0.43 deleterious(0.04) possibly_damaging(0.758) TCGA-VQ-A8P2-01 4 77816601 77816601 G A SOWAHB 3'UTR 0.30 TCGA-VQ-A8P2-01 4 77817882 77817882 G A SOWAHB Missense_Mutation p.A374V 0.38 deleterious(0.04) benign(0) TCGA-VQ-A8P2-01 4 7787976 7787976 G A AFAP1 Missense_Mutation p.A492V 0.21 tolerated(0.12) possibly_damaging(0.455) TCGA-VQ-A8P2-01 4 7802191 7802191 C T AFAP1 Missense_Mutation p.G415D 0.37 deleterious(0.04) probably_damaging(0.973) TCGA-VQ-A8P2-01 4 7844927 7844927 C T AFAP1 Missense_Mutation p.R162Q 0.39 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 4 78695850 78695850 T C CNOT6L Missense_Mutation p.T50A 0.42 tolerated(0.08) benign(0.002) TCGA-VQ-A8P2-01 4 78740509 78740509 G - CNOT6L 5'UTR 0.20 TCGA-VQ-A8P2-01 4 79437134 79437134 C T FRAS1 Silent p.D3452D 0.38 TCGA-VQ-A8P2-01 4 79460550 79460550 C T FRAS1 Missense_Mutation p.P3801S 0.42 possibly_damaging(0.817) TCGA-VQ-A8P2-01 4 79841777 79841777 C T PAQR3 Missense_Mutation p.M284I 0.09 tolerated(0.09) benign(0.216) TCGA-VQ-A8P2-01 4 79845094 79845094 G A PAQR3 Missense_Mutation p.A237V 0.29 tolerated(0.66) benign(0.004) TCGA-VQ-A8P2-01 4 80329149 80329149 G A GK2 Missense_Mutation p.A69V 0.35 tolerated(0.12) benign(0.19) TCGA-VQ-A8P2-01 4 81123283 81123283 C T PRDM8 Missense_Mutation p.P223S 0.13 tolerated(0.2) benign(0.068) TCGA-VQ-A8P2-01 4 81187907 81187907 G A FGF5 5'UTR 0.29 TCGA-VQ-A8P2-01 4 81284036 81284036 A G C4orf22 Silent p.Q80Q 0.08 TCGA-VQ-A8P2-01 4 81791254 81791254 A - C4orf22 Frame_Shift_Del p.R167Dfs*9 0.35 TCGA-VQ-A8P2-01 4 81952751 81952751 G A BMP3 Missense_Mutation p.A105T 0.38 deleterious(0.04) benign(0.094) TCGA-VQ-A8P2-01 4 81966985 81966985 G T BMP3 Missense_Mutation p.G137V 0.33 deleterious(0.02) probably_damaging(0.986) TCGA-VQ-A8P2-01 4 8224673 8224673 G A SH3TC1 Missense_Mutation p.D407N 0.33 tolerated(0.08) benign(0.123) TCGA-VQ-A8P2-01 4 8229411 8229411 G A SH3TC1 Missense_Mutation p.E664K 0.19 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 4 8229488 8229488 G A SH3TC1 Silent p.E689E 0.43 TCGA-VQ-A8P2-01 4 8304224 8304224 G A HTRA3 Silent p.R362R 0.43 TCGA-VQ-A8P2-01 4 83778205 83778205 C T SEC31A Missense_Mutation p.R594H 0.48 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A8P2-01 4 83800030 83800030 G T SEC31A Silent p.V85V 0.25 TCGA-VQ-A8P2-01 4 84222140 84222140 G T HPSE Missense_Mutation p.P482H 0.31 deleterious(0) probably_damaging(0.993) TCGA-VQ-A8P2-01 4 84243467 84243467 C T HPSE Missense_Mutation p.R93K 0.28 deleterious(0.01) possibly_damaging(0.885) TCGA-VQ-A8P2-01 4 85605246 85605246 G A WDFY3 Silent p.I3192I 0.47 TCGA-VQ-A8P2-01 4 85654600 85654600 G A WDFY3 Nonsense_Mutation p.R2386* 0.32 TCGA-VQ-A8P2-01 4 8582818 8582818 C T GPR78 Missense_Mutation p.R37C 0.39 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 4 8583170 8583170 C T GPR78 Missense_Mutation p.A154V 0.40 deleterious(0.03) probably_damaging(0.995) TCGA-VQ-A8P2-01 4 87643552 87643552 G A PTPN13 Missense_Mutation p.A525T 0.18 deleterious(0.04) possibly_damaging(0.657) TCGA-VQ-A8P2-01 4 87928519 87928519 G A AFF1 Intron 0.17 TCGA-VQ-A8P2-01 4 88036091 88036091 C T AFF1 Silent p.D702D 0.09 TCGA-VQ-A8P2-01 4 88053466 88053466 A - AFF1 Frame_Shift_Del p.D1075Tfs*2 0.28 TCGA-VQ-A8P2-01 4 88056809 88056809 C T AFF1 Nonsense_Mutation p.R1205* 0.13 TCGA-VQ-A8P2-01 4 88085028 88085028 A G KLHL8 Splice_Site p.X580_splice 0.16 TCGA-VQ-A8P2-01 4 88303453 88303453 A G HSD17B11 Missense_Mutation p.V91A 0.39 tolerated(0.08) benign(0.377) TCGA-VQ-A8P2-01 4 88940699 88940699 C A PKD2 Missense_Mutation p.L229I 0.41 tolerated(0.63) benign(0.003) TCGA-VQ-A8P2-01 4 88996058 88996058 G A PKD2 Missense_Mutation p.A873T 0.32 tolerated(0.15) benign(0.003) TCGA-VQ-A8P2-01 4 89013454 89013454 C T ABCG2 Missense_Mutation p.A634T 0.31 tolerated(0.3) benign(0.015) TCGA-VQ-A8P2-01 4 89199309 89199309 C T PPM1K Missense_Mutation p.E143K 0.10 tolerated(0.16) benign(0.004) TCGA-VQ-A8P2-01 4 89356988 89356988 C T HERC6 Silent p.L788L 0.17 TCGA-VQ-A8P2-01 4 89601291 89601291 G T HERC3 Missense_Mutation p.K748N 0.50 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 4 89941734 89941734 C T FAM13A Missense_Mutation p.V102M 0.40 deleterious(0.01) probably_damaging(0.931) TCGA-VQ-A8P2-01 4 90816369 90816369 C A MMRN1 Missense_Mutation p.L83M 0.13 deleterious_low_confidence(0.05) possibly_damaging(0.472) TCGA-VQ-A8P2-01 4 90874336 90874336 G A MMRN1 Missense_Mutation p.E1152K 0.40 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 4 94032075 94032075 C T GRID2 Missense_Mutation p.P236S 0.42 deleterious(0.02) probably_damaging(0.933) TCGA-VQ-A8P2-01 4 95173910 95173910 A - SMARCAD1 Frame_Shift_Del p.N347Mfs*24 0.48 TCGA-VQ-A8P2-01 4 95194823 95194823 G A SMARCAD1 Missense_Mutation p.G543D 0.11 deleterious(0.04) benign(0.303) TCGA-VQ-A8P2-01 4 95376483 95376483 G A PDLIM5 Missense_Mutation p.G15D 0.31 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 4 954486 954486 C A DGKQ Missense_Mutation p.K917N 0.56 deleterious(0) possibly_damaging(0.884) TCGA-VQ-A8P2-01 4 96035953 96035953 G T BMPR1B Missense_Mutation p.G106C 0.07 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8P2-01 4 96761824 96761824 A G PDHA2 Missense_Mutation p.I175V 0.16 tolerated(0.59) benign(0.005) TCGA-VQ-A8P2-01 4 96762303 96762303 G T PDHA2 Missense_Mutation p.K334N 0.36 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 4 9784383 9784383 A G DRD5 Missense_Mutation p.T244A 0.11 deleterious(0.02) probably_damaging(1) TCGA-VQ-A8P2-01 4 997872 997872 G A IDUA Silent p.S600S 0.40 TCGA-VQ-A8P2-01 5 100222173 100222173 C A ST8SIA4 Missense_Mutation p.S126I 0.14 possibly_damaging(0.5) TCGA-VQ-A8P2-01 5 102537309 102537309 A - PPIP5K2 Frame_Shift_Del p.N1217Tfs*35 0.59 TCGA-VQ-A8P2-01 5 102611815 102611815 G A C5orf30 Silent p.T65T 0.12 TCGA-VQ-A8P2-01 5 102890474 102890474 T C NUDT12 Missense_Mutation p.M349V 0.12 deleterious(0.01) possibly_damaging(0.513) TCGA-VQ-A8P2-01 5 102895080 102895080 G T NUDT12 Missense_Mutation p.A99D 0.34 tolerated(0.13) possibly_damaging(0.551) TCGA-VQ-A8P2-01 5 102895758 102895758 A G NUDT12 Silent p.F64F 0.10 TCGA-VQ-A8P2-01 5 1065562 1065562 G A SLC12A7 Missense_Mutation p.T758I 0.44 tolerated(0.29) benign(0.01) TCGA-VQ-A8P2-01 5 106716988 106716988 G A EFNA5 Silent p.L219L 0.40 TCGA-VQ-A8P2-01 5 106716991 106716991 G T EFNA5 Missense_Mutation p.L218I 0.39 tolerated_low_confidence(0.37) unknown(0) TCGA-VQ-A8P2-01 5 1074757 1074757 C T SLC12A7 Missense_Mutation p.R666H 0.43 deleterious(0) possibly_damaging(0.563) TCGA-VQ-A8P2-01 5 107700599 107700599 C T FBXL17 Missense_Mutation p.C405Y 0.38 tolerated(0.05) possibly_damaging(0.795) TCGA-VQ-A8P2-01 5 109103235 109103235 G A MAN2A1 Splice_Site p.X279_splice 0.39 TCGA-VQ-A8P2-01 5 109103387 109103388 - TT MAN2A1 Frame_Shift_Ins p.W332Ffs*18 0.28 TCGA-VQ-A8P2-01 5 109152978 109152978 C T MAN2A1 Missense_Mutation p.L650F 0.10 deleterious(0) benign(0.358) TCGA-VQ-A8P2-01 5 10988355 10988355 C T CTNND2 Splice_Site p.X1071_splice 0.33 TCGA-VQ-A8P2-01 5 110079474 110079474 C T SLC25A46 Missense_Mutation p.R124C 0.38 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 5 110456840 110456840 G T WDR36 Splice_Site p.X772_splice 0.45 TCGA-VQ-A8P2-01 5 111071142 111071142 C A NREP Missense_Mutation p.E66D 0.40 tolerated(0.38) benign(0.359) TCGA-VQ-A8P2-01 5 111497309 111497309 A G EPB41L4A 3'Flank 0.34 TCGA-VQ-A8P2-01 5 112175978 112175978 C A APC Missense_Mutation p.L1563I 0.14 benign(0.002) TCGA-VQ-A8P2-01 5 112177901 112177901 C T APC Nonsense_Mutation p.R2204* 0.47 TCGA-VQ-A8P2-01 5 112312585 112312585 G A DCP2 5'UTR 0.06 TCGA-VQ-A8P2-01 5 112312634 112312634 G A DCP2 Missense_Mutation p.E2K 0.12 deleterious_low_confidence(0) benign(0.37) TCGA-VQ-A8P2-01 5 112418625 112418625 G A MCC Silent p.Y572Y 0.39 TCGA-VQ-A8P2-01 5 112770550 112770550 C T TSSK1B 5'UTR 0.08 TCGA-VQ-A8P2-01 5 114466514 114466514 C T TRIM36 Missense_Mutation p.R536H 0.13 tolerated(0.07) possibly_damaging(0.466) TCGA-VQ-A8P2-01 5 114472805 114472805 C A TRIM36 Nonsense_Mutation p.E380* 0.45 TCGA-VQ-A8P2-01 5 114513372 114513372 C T TRIM36 Intron 0.18 TCGA-VQ-A8P2-01 5 114610997 114610997 G A CCDC112 Silent p.H278H 0.39 TCGA-VQ-A8P2-01 5 115151945 115151945 G A CDO1 Silent p.Y50Y 0.13 TCGA-VQ-A8P2-01 5 115152172 115152172 C T CDO1 5'UTR 0.17 TCGA-VQ-A8P2-01 5 115298725 115298725 C T AQPEP Silent p.C137C 0.11 TCGA-VQ-A8P2-01 5 115320399 115320399 G A AQPEP Missense_Mutation p.G324D 0.48 tolerated(0.05) probably_damaging(0.991) TCGA-VQ-A8P2-01 5 118506774 118506774 A G DMXL1 Silent p.L2096L 0.38 TCGA-VQ-A8P2-01 5 118525508 118525508 G A DMXL1 Missense_Mutation p.S2414N 0.42 tolerated(0.38) benign(0) TCGA-VQ-A8P2-01 5 118582832 118582832 G A DMXL1 Missense_Mutation p.G3001E 0.41 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 5 120021725 120021725 C T PRR16 Missense_Mutation p.T56M 0.37 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 5 1219161 1219161 C T SLC6A19 Silent p.V439V 0.36 TCGA-VQ-A8P2-01 5 122154656 122154656 G A SNX2 Missense_Mutation p.A384T 0.40 tolerated(0.43) probably_damaging(0.974) TCGA-VQ-A8P2-01 5 122682229 122682229 C A CEP120 Missense_Mutation p.S982I 0.43 tolerated_low_confidence(0.05) benign(0.165) TCGA-VQ-A8P2-01 5 124079834 124079834 C A ZNF608 Missense_Mutation p.K283N 0.09 deleterious(0.01) probably_damaging(0.996) TCGA-VQ-A8P2-01 5 125885892 125885892 G A ALDH7A1 Missense_Mutation p.L471F 0.17 deleterious(0.01) benign(0.146) TCGA-VQ-A8P2-01 5 126705611 126705611 C T MEGF10 Missense_Mutation p.A110V 0.49 deleterious(0.01) benign(0.146) TCGA-VQ-A8P2-01 5 127595438 127595438 C T FBN2 Silent p.E2816E 0.09 TCGA-VQ-A8P2-01 5 127624828 127624828 G A FBN2 Missense_Mutation p.R2210C 0.49 deleterious(0.04) possibly_damaging(0.892) TCGA-VQ-A8P2-01 5 128956401 128956401 T C ADAMTS19 Silent p.G517G 0.48 TCGA-VQ-A8P2-01 5 128983497 128983497 C T ADAMTS19 Missense_Mutation p.P632S 0.19 deleterious(0.02) benign(0.178) TCGA-VQ-A8P2-01 5 129015462 129015462 C T ADAMTS19 Nonsense_Mutation p.R832* 0.37 TCGA-VQ-A8P2-01 5 1294276 1294276 G A TERT Missense_Mutation p.A242V 0.59 tolerated(0.28) benign(0.001) TCGA-VQ-A8P2-01 5 130846180 130846180 G A RAPGEF6 Missense_Mutation p.T211M 0.36 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 5 131055103 131055103 C T FNIP1 Missense_Mutation p.R121Q 0.10 deleterious(0) possibly_damaging(0.669) TCGA-VQ-A8P2-01 5 131310505 131310505 C T ACSL6 Intron 0.42 TCGA-VQ-A8P2-01 5 131398444 131398444 C T IL3 Missense_Mutation p.A140V 0.33 tolerated_low_confidence(0.17) benign(0) TCGA-VQ-A8P2-01 5 131925515 131925515 G A RAD50 Missense_Mutation p.E480K 0.40 tolerated(0.13) possibly_damaging(0.566) TCGA-VQ-A8P2-01 5 132037893 132037893 G A KIF3A Silent p.L563L 0.52 TCGA-VQ-A8P2-01 5 132056327 132056327 C A KIF3A Missense_Mutation p.R197I 0.10 deleterious(0.01) possibly_damaging(0.88) TCGA-VQ-A8P2-01 5 132085079 132085079 T C CCNI2 Silent p.L200L 0.48 TCGA-VQ-A8P2-01 5 132197397 132197397 G A GDF9 Missense_Mutation p.P417S 0.36 deleterious(0.02) probably_damaging(0.956) TCGA-VQ-A8P2-01 5 1325892 1325892 A - CLPTM1L Frame_Shift_Del p.W374Gfs*4 0.18 TCGA-VQ-A8P2-01 5 133695620 133695620 G T CDKL3 Missense_Mutation p.L110I 0.67 tolerated(0.61) benign(0.311) TCGA-VQ-A8P2-01 5 133914423 133914423 C T JADE2 Missense_Mutation p.R597C 0.43 tolerated(0.07) possibly_damaging(0.732) TCGA-VQ-A8P2-01 5 133914814 133914814 C T JADE2 Missense_Mutation p.A727V 0.44 tolerated(0.55) benign(0.057) TCGA-VQ-A8P2-01 5 134002582 134002582 C T SEC24A Missense_Mutation p.P212L 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A8P2-01 5 134011773 134011773 A C SEC24A Missense_Mutation p.K404N 0.34 deleterious(0) benign(0.331) TCGA-VQ-A8P2-01 5 134190802 134190802 G A C5orf24 Missense_Mutation p.S71N 0.30 tolerated_low_confidence(0.79) benign(0.001) TCGA-VQ-A8P2-01 5 134782138 134782138 G A C5orf20 Missense_Mutation p.R221W 0.31 tolerated_low_confidence(0.18) benign(0.082) TCGA-VQ-A8P2-01 5 135382090 135382090 C T TGFBI Missense_Mutation p.T122M 0.30 deleterious(0) probably_damaging(0.97) TCGA-VQ-A8P2-01 5 13692229 13692229 C T DNAH5 Missense_Mutation p.R4580Q 0.27 possibly_damaging(0.553) TCGA-VQ-A8P2-01 5 136997604 136997604 T G KLHL3 Missense_Mutation p.Q251H 0.47 deleterious(0.04) benign(0.248) TCGA-VQ-A8P2-01 5 137013311 137013311 C A KLHL3 Nonsense_Mutation p.E187* 0.52 TCGA-VQ-A8P2-01 5 137206549 137206549 C A MYOT Missense_Mutation p.P70H 0.26 tolerated(0.28) possibly_damaging(0.866) TCGA-VQ-A8P2-01 5 137243583 137243584 - T PKD2L2 Frame_Shift_Ins p.A379Cfs*12 0.27 TCGA-VQ-A8P2-01 5 137261613 137261613 G A PKD2L2 Missense_Mutation p.E556K 0.46 tolerated(0.15) benign(0.041) TCGA-VQ-A8P2-01 5 13735336 13735336 C T DNAH5 Missense_Mutation p.E3889K 0.40 benign(0.305) TCGA-VQ-A8P2-01 5 137502305 137502305 G A BRD8 Missense_Mutation p.P300L 0.15 deleterious(0.03) possibly_damaging(0.493) TCGA-VQ-A8P2-01 5 137762975 137762975 C T KDM3B Missense_Mutation p.P1534S 0.36 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 5 137765557 137765557 C T KDM3B Missense_Mutation p.T1599M 0.23 tolerated(0.05) probably_damaging(0.941) TCGA-VQ-A8P2-01 5 137844504 137844504 G A ETF1 Missense_Mutation p.T362I 0.34 deleterious(0.04) possibly_damaging(0.684) TCGA-VQ-A8P2-01 5 137853386 137853386 G A ETF1 Missense_Mutation p.P89L 0.25 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 5 138209468 138209468 G A LRRTM2 Missense_Mutation p.T261I 0.41 deleterious(0) possibly_damaging(0.799) TCGA-VQ-A8P2-01 5 138209747 138209747 G A LRRTM2 Missense_Mutation p.S168F 0.27 tolerated(0.07) possibly_damaging(0.689) TCGA-VQ-A8P2-01 5 138266310 138266310 G A CTNNA1 Missense_Mutation p.C720Y 0.38 deleterious(0.02) benign(0.213) TCGA-VQ-A8P2-01 5 13841921 13841921 C T DNAH5 Nonsense_Mutation p.W1788* 0.08 TCGA-VQ-A8P2-01 5 138700347 138700347 G A PAIP2 Missense_Mutation p.R78Q 0.16 deleterious(0.05) benign(0.077) TCGA-VQ-A8P2-01 5 138714279 138714279 C T SLC23A1 Missense_Mutation p.G394R 0.18 deleterious(0) probably_damaging(0.937) TCGA-VQ-A8P2-01 5 139060822 139060822 G A CXXC5 Silent p.A238A 0.54 TCGA-VQ-A8P2-01 5 139216516 139216516 G A PSD2 Silent p.A508A 0.86 TCGA-VQ-A8P2-01 5 139219727 139219727 G A PSD2 Missense_Mutation p.R695Q 0.08 tolerated(0.05) probably_damaging(0.91) TCGA-VQ-A8P2-01 5 139909127 139909127 C T ANKHD1 Missense_Mutation p.S2199F 0.39 probably_damaging(0.949) TCGA-VQ-A8P2-01 5 139931581 139931581 G A SRA1 Missense_Mutation p.R126C 0.08 deleterious(0.02) benign(0.025) TCGA-VQ-A8P2-01 5 139947310 139947310 C T SLC35A4 Missense_Mutation p.P186S 0.31 tolerated(0.12) benign(0.285) TCGA-VQ-A8P2-01 5 140032642 140032642 G A IK Missense_Mutation p.R106Q 0.11 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 5 140054288 140054288 G A HARS Silent p.L478L 0.38 TCGA-VQ-A8P2-01 5 140167500 140167500 T C PCDHA1 Missense_Mutation p.V542A 0.34 tolerated_low_confidence(0.06) benign(0.209) TCGA-VQ-A8P2-01 5 140167673 140167673 G A PCDHA1 Missense_Mutation p.D600N 0.38 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-VQ-A8P2-01 5 140176178 140176178 G A PCDHA2 Silent p.P543P 0.36 TCGA-VQ-A8P2-01 5 140176250 140176250 G A PCDHA2 Silent p.A567A 0.34 TCGA-VQ-A8P2-01 5 140181616 140181616 G A PCDHA3 Silent p.A278A 0.35 TCGA-VQ-A8P2-01 5 140188138 140188138 G A PCDHA4 Missense_Mutation p.A456T 0.32 tolerated_low_confidence(0.07) benign(0.009) TCGA-VQ-A8P2-01 5 140188209 140188209 G A PCDHA4 Silent p.A479A 0.43 TCGA-VQ-A8P2-01 5 140189153 140189153 C T PCDHA4 Missense_Mutation p.A794V 0.41 tolerated_low_confidence(0.09) benign(0.031) TCGA-VQ-A8P2-01 5 140208853 140208853 G A PCDHA6 Missense_Mutation p.V393I 0.37 tolerated_low_confidence(0.19) benign(0.134) TCGA-VQ-A8P2-01 5 140216037 140216037 A T PCDHA7 Missense_Mutation p.E690V 0.37 deleterious_low_confidence(0.01) benign(0.043) TCGA-VQ-A8P2-01 5 140221183 140221183 G A PCDHA8 Missense_Mutation p.E93K 0.10 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 5 140222184 140222184 C T PCDHA8 Silent p.T426T 0.33 TCGA-VQ-A8P2-01 5 140229376 140229376 G A PCDHA9 Silent p.S432S 0.10 TCGA-VQ-A8P2-01 5 140237232 140237232 G T PCDHA10 Missense_Mutation p.Q533H 0.14 deleterious_low_confidence(0.02) possibly_damaging(0.542) TCGA-VQ-A8P2-01 5 140248986 140248986 G A PCDHA11 Missense_Mutation p.A100T 0.35 tolerated_low_confidence(0.1) benign(0.101) TCGA-VQ-A8P2-01 5 140249034 140249034 G A PCDHA11 Missense_Mutation p.V116I 0.41 tolerated_low_confidence(0.09) benign(0.076) TCGA-VQ-A8P2-01 5 140249735 140249735 C T PCDHA11 Silent p.V349V 0.42 TCGA-VQ-A8P2-01 5 140307193 140307193 G A PCDHAC1 Missense_Mutation p.R239H 0.50 deleterious(0.01) possibly_damaging(0.668) TCGA-VQ-A8P2-01 5 140348018 140348018 G T PCDHAC2 Missense_Mutation p.S556I 0.17 tolerated(0.53) benign(0.001) TCGA-VQ-A8P2-01 5 140476117 140476117 G A PCDHB2 Silent p.A581A 0.21 TCGA-VQ-A8P2-01 5 140476693 140476693 C T PCDHB2 Silent p.I773I 0.39 TCGA-VQ-A8P2-01 5 140480531 140480531 G A PCDHB3 Missense_Mutation p.E100K 0.37 deleterious_low_confidence(0) possibly_damaging(0.756) TCGA-VQ-A8P2-01 5 140503053 140503053 G A PCDHB4 Silent p.P491P 0.12 TCGA-VQ-A8P2-01 5 140531395 140531395 C T PCDHB6 Silent p.Y519Y 0.31 TCGA-VQ-A8P2-01 5 140532268 140532268 T C PCDHB6 3'UTR 0.50 TCGA-VQ-A8P2-01 5 140537067 140537067 G A PCDHB17 Silent p.P497P 0.43 TCGA-VQ-A8P2-01 5 140537375 140537375 G T PCDHB17 3'UTR 0.38 TCGA-VQ-A8P2-01 5 140537653 140537653 T C PCDHB17 3'UTR 0.33 TCGA-VQ-A8P2-01 5 140553068 140553068 G A PCDHB7 Missense_Mutation p.G218S 0.34 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-VQ-A8P2-01 5 140554195 140554195 C T PCDHB7 Silent p.D593D 0.26 TCGA-VQ-A8P2-01 5 140554688 140554688 G A PCDHB7 Missense_Mutation p.G758R 0.42 tolerated_low_confidence(0.08) benign(0.055) TCGA-VQ-A8P2-01 5 140554833 140554833 C T PCDHB7 3'UTR 0.75 TCGA-VQ-A8P2-01 5 140554856 140554856 C T PCDHB7 3'UTR 0.33 TCGA-VQ-A8P2-01 5 140559195 140559195 C T PCDHB8 Missense_Mutation p.A527V 0.33 deleterious_low_confidence(0.03) benign(0.012) TCGA-VQ-A8P2-01 5 140574398 140574398 C T PCDHB10 Missense_Mutation p.T758M 0.33 tolerated_low_confidence(0.19) benign(0.051) TCGA-VQ-A8P2-01 5 140579773 140579773 C A PCDHB11 Silent p.I142I 0.36 TCGA-VQ-A8P2-01 5 140590251 140590251 C T PCDHB12 Missense_Mutation p.A591V 0.23 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-VQ-A8P2-01 5 140590273 140590273 G T PCDHB12 Missense_Mutation p.Q598H 0.11 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-VQ-A8P2-01 5 140590336 140590336 G A PCDHB12 Silent p.A619A 0.14 TCGA-VQ-A8P2-01 5 140605048 140605048 G A PCDHB14 Silent p.T657T 0.10 TCGA-VQ-A8P2-01 5 140605170 140605170 C T PCDHB14 Missense_Mutation p.S698L 0.41 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 5 140605518 140605518 G T PCDHB14 3'UTR 0.44 TCGA-VQ-A8P2-01 5 140616432 140616432 C T PCDHB18 RNA 0.46 TCGA-VQ-A8P2-01 5 140711236 140711236 G A PCDHGA1 Missense_Mutation p.A329T 0.14 tolerated_low_confidence(0.49) benign(0.173) TCGA-VQ-A8P2-01 5 140712697 140712697 A G PCDHGA1 Intron 0.40 TCGA-VQ-A8P2-01 5 140719900 140719900 C T PCDHGA2 Silent p.R454R 0.34 TCGA-VQ-A8P2-01 5 140720175 140720175 T C PCDHGA2 Missense_Mutation p.V546A 0.46 deleterious_low_confidence(0.05) possibly_damaging(0.517) TCGA-VQ-A8P2-01 5 140723816 140723816 G A PCDHGA3 Silent p.T72T 0.22 TCGA-VQ-A8P2-01 5 140724783 140724784 - A PCDHGA3 Frame_Shift_Ins p.S397Ifs*23 0.32 TCGA-VQ-A8P2-01 5 140725487 140725487 G A PCDHGA3 Silent p.A629A 0.29 TCGA-VQ-A8P2-01 5 140739976 140739976 C T PCDHGB2 Nonsense_Mutation p.R92* 0.34 TCGA-VQ-A8P2-01 5 140744339 140744339 G A PCDHGA5 Missense_Mutation p.A148T 0.35 tolerated_low_confidence(0.12) benign(0.004) TCGA-VQ-A8P2-01 5 140750432 140750432 G A PCDHGB3 Silent p.A157A 0.10 TCGA-VQ-A8P2-01 5 140752193 140752193 C T PCDHGB3 Silent p.S744S 0.36 TCGA-VQ-A8P2-01 5 140753950 140753950 G A PCDHGA6 Silent p.P100P 0.40 TCGA-VQ-A8P2-01 5 140772578 140772578 C T PCDHGA8 Silent p.I66I 0.09 TCGA-VQ-A8P2-01 5 140789108 140789108 G A PCDHGB6 Missense_Mutation p.D447N 0.60 deleterious(0.01) probably_damaging(0.913) TCGA-VQ-A8P2-01 5 140794566 140794566 G A PCDHGA10 Silent p.L608L 0.37 TCGA-VQ-A8P2-01 5 140801707 140801707 C T PCDHGA11 Missense_Mutation p.R305W 0.37 tolerated_low_confidence(0.12) possibly_damaging(0.642) TCGA-VQ-A8P2-01 5 140803023 140803023 C T PCDHGA11 Silent p.G743G 0.17 TCGA-VQ-A8P2-01 5 140811775 140811775 G T PCDHGA12 Missense_Mutation p.E483D 0.15 tolerated_low_confidence(0.15) benign(0.098) TCGA-VQ-A8P2-01 5 140855637 140855637 C A PCDHGC3 5'UTR 0.55 TCGA-VQ-A8P2-01 5 140857192 140857192 C T PCDHGC3 Silent p.T503T 0.22 TCGA-VQ-A8P2-01 5 140857859 140857859 C A PCDHGC3 Missense_Mutation p.L726I 0.39 tolerated(0.08) benign(0.105) TCGA-VQ-A8P2-01 5 140864926 140864926 C T PCDHGC4 Silent p.R62R 0.49 TCGA-VQ-A8P2-01 5 140869176 140869176 C T PCDHGC5 Silent p.I123I 0.39 TCGA-VQ-A8P2-01 5 140954664 140954664 T G DIAPH1 Missense_Mutation p.K504T 0.34 unknown(0) TCGA-VQ-A8P2-01 5 141004847 141004847 G A HDAC3 Missense_Mutation p.A382V 0.40 tolerated(0.06) benign(0.017) TCGA-VQ-A8P2-01 5 141051285 141051285 C T ARAP3 Missense_Mutation p.R569H 0.13 deleterious(0.03) benign(0.022) TCGA-VQ-A8P2-01 5 141052584 141052584 G A ARAP3 Silent p.S363S 0.41 TCGA-VQ-A8P2-01 5 141359744 141359744 G A RNF14 Silent p.Q297Q 0.49 TCGA-VQ-A8P2-01 5 14280475 14280475 C T TRIO Missense_Mutation p.R93C 0.19 probably_damaging(0.997) TCGA-VQ-A8P2-01 5 143587043 143587043 G T KCTD16 Missense_Mutation p.A256S 0.31 tolerated(0.2) benign(0.004) TCGA-VQ-A8P2-01 5 14366989 14366989 C T TRIO Silent p.N925N 0.45 TCGA-VQ-A8P2-01 5 143853296 143853296 G T KCTD16 Missense_Mutation p.E302D 0.20 tolerated(0.12) probably_damaging(0.978) TCGA-VQ-A8P2-01 5 14462929 14462929 C T TRIO Silent p.S1854S 0.10 TCGA-VQ-A8P2-01 5 14471494 14471494 C A TRIO Missense_Mutation p.P1944H 0.09 benign(0.087) TCGA-VQ-A8P2-01 5 14485304 14485304 T C TRIO Missense_Mutation p.W2262R 0.37 benign(0.001) TCGA-VQ-A8P2-01 5 145252433 145252433 C T GRXCR2 Silent p.K33K 0.38 TCGA-VQ-A8P2-01 5 145435650 145435650 C T SH3RF2 Missense_Mutation p.R477W 0.44 deleterious(0.02) benign(0.052) TCGA-VQ-A8P2-01 5 145539997 145539997 G T LARS Nonsense_Mutation p.S216* 0.34 TCGA-VQ-A8P2-01 5 145641097 145641097 G T RBM27 Missense_Mutation p.A640S 0.51 tolerated(0.06) possibly_damaging(0.844) TCGA-VQ-A8P2-01 5 145665676 145665677 - A RBM27 3'UTR 0.40 TCGA-VQ-A8P2-01 5 145838729 145838729 G A TCERG1 Missense_Mutation p.A241T 0.36 tolerated_low_confidence(0.55) unknown(0) TCGA-VQ-A8P2-01 5 145859645 145859646 - A TCERG1 Frame_Shift_Ins p.R628Tfs*6 0.35 TCGA-VQ-A8P2-01 5 147040712 147040712 C A JAKMIP2 Silent p.R142R 0.54 TCGA-VQ-A8P2-01 5 14711209 14711209 A - ANKH 3'UTR 0.52 TCGA-VQ-A8P2-01 5 14751265 14751265 G A ANKH Silent p.G200G 0.25 TCGA-VQ-A8P2-01 5 147665564 147665564 G A SPINK13 Missense_Mutation p.E80K 0.39 tolerated(0.3) probably_damaging(0.983) TCGA-VQ-A8P2-01 5 148577799 148577799 G A ABLIM3 Missense_Mutation p.A57T 0.35 deleterious(0.04) possibly_damaging(0.648) TCGA-VQ-A8P2-01 5 148885036 148885036 G A CSNK1A1 Missense_Mutation p.T355I 0.40 tolerated_low_confidence(0.05) probably_damaging(0.997) TCGA-VQ-A8P2-01 5 149449469 149449470 - C CSF1R Frame_Shift_Ins p.S493Efs*20 0.32 TCGA-VQ-A8P2-01 5 149449791 149449791 G A CSF1R Missense_Mutation p.P425S 0.21 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 5 149501462 149501462 G A PDGFRB Silent p.Y775Y 0.10 TCGA-VQ-A8P2-01 5 149514441 149514441 G A PDGFRB Missense_Mutation p.A168V 0.32 tolerated(0.29) benign(0.001) TCGA-VQ-A8P2-01 5 149515200 149515200 G A PDGFRB Silent p.D94D 0.44 TCGA-VQ-A8P2-01 5 149563112 149563112 C T CDX1 Missense_Mutation p.P223S 0.74 tolerated(0.32) benign(0.002) TCGA-VQ-A8P2-01 5 149576690 149576690 C T SLC6A7 Silent p.F145F 0.40 TCGA-VQ-A8P2-01 5 149677363 149677363 G A ARSI Missense_Mutation p.P375L 0.44 tolerated(0.09) benign(0.41) TCGA-VQ-A8P2-01 5 149901216 149901216 G A NDST1 Missense_Mutation p.A134T 0.38 tolerated(0.26) benign(0.032) TCGA-VQ-A8P2-01 5 149915316 149915316 G A NDST1 Missense_Mutation p.V436M 0.14 deleterious(0) probably_damaging(0.967) TCGA-VQ-A8P2-01 5 150029795 150029795 C T SYNPO Missense_Mutation p.A897V 0.42 tolerated(0.29) probably_damaging(0.932) TCGA-VQ-A8P2-01 5 150073720 150073720 G A RBM22 Missense_Mutation p.R277W 0.43 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 5 1501698 1501698 C T LPCAT1 Silent p.T52T 0.32 TCGA-VQ-A8P2-01 5 150567016 150567016 G T CCDC69 Silent p.L108L 0.58 TCGA-VQ-A8P2-01 5 150885606 150885606 G A FAT2 Silent p.R4190R 0.43 TCGA-VQ-A8P2-01 5 150900978 150900978 G A FAT2 Missense_Mutation p.P3726S 0.33 possibly_damaging(0.488) TCGA-VQ-A8P2-01 5 150922910 150922910 G A FAT2 Missense_Mutation p.S2593F 0.14 probably_damaging(1) TCGA-VQ-A8P2-01 5 150924878 150924878 C T FAT2 Missense_Mutation p.R1937Q 0.33 benign(0.01) TCGA-VQ-A8P2-01 5 150932825 150932825 T C FAT2 Missense_Mutation p.T1357A 0.34 benign(0.008) TCGA-VQ-A8P2-01 5 153674458 153674458 G A GALNT10 Missense_Mutation p.R81Q 0.19 tolerated(0.25) benign(0.034) TCGA-VQ-A8P2-01 5 153857062 153857062 C T HAND1 Silent p.A169A 0.43 TCGA-VQ-A8P2-01 5 154173380 154173380 G A LARP1 Missense_Mutation p.V220M 0.39 tolerated(0.16) benign(0.003) TCGA-VQ-A8P2-01 5 154181659 154181659 G A LARP1 Silent p.E526E 0.22 TCGA-VQ-A8P2-01 5 154188143 154188143 G T LARP1 Missense_Mutation p.E864D 0.30 tolerated(0.12) benign(0.325) TCGA-VQ-A8P2-01 5 155771592 155771592 C T SGCD Nonsense_Mutation p.R33* 0.38 TCGA-VQ-A8P2-01 5 156566112 156566112 C T MED7 Missense_Mutation p.D111N 0.41 deleterious(0.02) possibly_damaging(0.777) TCGA-VQ-A8P2-01 5 156566377 156566377 C T MED7 Silent p.T22T 0.19 TCGA-VQ-A8P2-01 5 156770203 156770203 C T FNDC9 Nonsense_Mutation p.W114* 0.10 TCGA-VQ-A8P2-01 5 156921749 156921749 G A ADAM19 Missense_Mutation p.T550I 0.39 tolerated(0.24) benign(0.049) TCGA-VQ-A8P2-01 5 157065313 157065313 G A SOX30 Missense_Mutation p.T602I 0.46 deleterious(0.01) benign(0.235) TCGA-VQ-A8P2-01 5 157073825 157073825 C T SOX30 Splice_Site p.X403_splice 0.37 TCGA-VQ-A8P2-01 5 157218921 157218921 G A CLINT1 Silent p.G390G 0.34 TCGA-VQ-A8P2-01 5 158526597 158526597 T - EBF1 5'UTR 0.62 TCGA-VQ-A8P2-01 5 158585701 158585701 C A RNF145 Missense_Mutation p.A687S 0.32 tolerated_low_confidence(0.24) benign(0.001) TCGA-VQ-A8P2-01 5 158588444 158588444 C T RNF145 Missense_Mutation p.G516S 0.15 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8P2-01 5 158621768 158621768 A T RNF145 Nonsense_Mutation p.Y113* 0.43 TCGA-VQ-A8P2-01 5 158749491 158749491 G A IL12B Silent p.C131C 0.39 TCGA-VQ-A8P2-01 5 159707560 159707560 G A CCNJL Silent p.T84T 0.29 TCGA-VQ-A8P2-01 5 159821210 159821210 G T C5orf54 Missense_Mutation p.L430I 0.21 tolerated(0.09) possibly_damaging(0.84) TCGA-VQ-A8P2-01 5 159834589 159834589 T G SLU7 Missense_Mutation p.E340A 0.09 deleterious(0) possibly_damaging(0.509) TCGA-VQ-A8P2-01 5 159854847 159854847 C T PTTG1 Missense_Mutation p.P166S 0.34 deleterious(0.03) probably_damaging(0.951) TCGA-VQ-A8P2-01 5 160886851 160886851 C A GABRB2 Splice_Site p.X80_splice 0.20 TCGA-VQ-A8P2-01 5 161113335 161113335 G A GABRA6 Silent p.R46R 0.40 TCGA-VQ-A8P2-01 5 161119202 161119202 T - GABRA6 Frame_Shift_Del p.L362Cfs*9 0.21 TCGA-VQ-A8P2-01 5 161309632 161309632 G A GABRA1 Missense_Mutation p.E210K 0.45 tolerated(0.28) benign(0.303) TCGA-VQ-A8P2-01 5 161580331 161580331 G A GABRG2 Missense_Mutation p.C502Y 0.36 tolerated(0.17) possibly_damaging(0.709) TCGA-VQ-A8P2-01 5 16474906 16474906 C A FAM134B Missense_Mutation p.A480S 0.21 tolerated(0.54) benign(0.011) TCGA-VQ-A8P2-01 5 16475174 16475174 C T FAM134B Silent p.T390T 0.41 TCGA-VQ-A8P2-01 5 16673854 16673854 C A MYO10 Silent p.T1703T 0.52 TCGA-VQ-A8P2-01 5 16701426 16701426 G A MYO10 Silent p.S1026S 0.32 TCGA-VQ-A8P2-01 5 167673862 167673862 G A TENM2 Missense_Mutation p.S1973N 0.42 deleterious(0.02) benign(0.194) TCGA-VQ-A8P2-01 5 168096903 168096903 G C SLIT3 Missense_Mutation p.D1407E 0.51 tolerated(1) benign(0.005) TCGA-VQ-A8P2-01 5 16818217 16818217 C T MYO10 Silent p.T60T 0.42 TCGA-VQ-A8P2-01 5 168233540 168233540 C T SLIT3 Silent p.S282S 0.45 TCGA-VQ-A8P2-01 5 169015404 169015404 A - SPDL1 5'UTR 0.85 TCGA-VQ-A8P2-01 5 169081459 169081459 C T DOCK2 Silent p.G32G 0.49 TCGA-VQ-A8P2-01 5 169101370 169101370 C T DOCK2 Missense_Mutation p.L131F 0.39 deleterious(0.01) benign(0.146) TCGA-VQ-A8P2-01 5 169127044 169127044 G A DOCK2 Missense_Mutation p.V387M 0.32 tolerated(0.22) benign(0.261) TCGA-VQ-A8P2-01 5 169535091 169535091 A C FOXI1 Missense_Mutation p.K205Q 0.41 deleterious(0) probably_damaging(0.928) TCGA-VQ-A8P2-01 5 170222393 170222393 G A GABRP Missense_Mutation p.R141H 0.21 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 5 171207 171207 C T PLEKHG4B Missense_Mutation p.S904L 0.08 deleterious(0) probably_damaging(0.975) TCGA-VQ-A8P2-01 5 171326970 171326970 G A FBXW11 Nonsense_Mutation p.R170* 0.42 TCGA-VQ-A8P2-01 5 171766378 171766378 C T SH3PXD2B Silent p.R577R 0.07 TCGA-VQ-A8P2-01 5 172195768 172195768 G T DUSP1 Nonsense_Mutation p.C367* 0.45 TCGA-VQ-A8P2-01 5 172341813 172341813 G A ERGIC1 Missense_Mutation p.R116H 0.24 deleterious(0.02) probably_damaging(0.965) TCGA-VQ-A8P2-01 5 172421816 172421816 G A ATP6V0E1 Missense_Mutation p.C48Y 0.50 deleterious(0) possibly_damaging(0.886) TCGA-VQ-A8P2-01 5 172513547 172513547 G A CREBRF Missense_Mutation p.R18Q 0.46 tolerated_low_confidence(0.89) benign(0.007) TCGA-VQ-A8P2-01 5 172585849 172585849 G A BNIP1 Splice_Site p.X167_splice 0.25 TCGA-VQ-A8P2-01 5 172661971 172661971 G A NKX2-5 Missense_Mutation p.A39V 0.19 tolerated(0.52) probably_damaging(0.939) TCGA-VQ-A8P2-01 5 173378883 173378883 G A CPEB4 Silent p.Q574Q 0.15 TCGA-VQ-A8P2-01 5 17354197 17354197 G A CTD-2139B15.2 Intron 0.34 TCGA-VQ-A8P2-01 5 174869224 174869224 G A DRD1 Silent p.C293C 0.40 TCGA-VQ-A8P2-01 5 174870024 174870024 C T DRD1 Missense_Mutation p.A27T 0.30 deleterious(0) benign(0.064) TCGA-VQ-A8P2-01 5 174940572 174940572 C T SFXN1 Missense_Mutation p.L235F 0.12 tolerated(0.51) benign(0.033) TCGA-VQ-A8P2-01 5 175523833 175523833 A G FAM153B Missense_Mutation p.D47G 0.18 deleterious_low_confidence(0) possibly_damaging(0.728) TCGA-VQ-A8P2-01 5 175717704 175717704 C T SIMC1 Intron 0.32 TCGA-VQ-A8P2-01 5 175772212 175772212 C T SIMC1 Nonsense_Mutation p.R380* 0.34 TCGA-VQ-A8P2-01 5 175798839 175798839 A G ARL10 Missense_Mutation p.T226A 0.12 tolerated(0.52) benign(0.033) TCGA-VQ-A8P2-01 5 175921000 175921000 G T FAF2 Missense_Mutation p.A162S 0.40 deleterious(0.01) probably_damaging(0.977) TCGA-VQ-A8P2-01 5 176295869 176295869 C T UNC5A Nonsense_Mutation p.R209* 0.40 TCGA-VQ-A8P2-01 5 176297494 176297494 A G UNC5A Missense_Mutation p.D282G 0.39 tolerated(0.39) benign(0.352) TCGA-VQ-A8P2-01 5 176301102 176301102 C T UNC5A Silent p.D340D 0.31 TCGA-VQ-A8P2-01 5 176308174 176308174 C T HK3 Missense_Mutation p.R891H 0.33 tolerated(0.22) benign(0.012) TCGA-VQ-A8P2-01 5 176311096 176311096 C A HK3 Missense_Mutation p.D633Y 0.19 deleterious(0.01) probably_damaging(0.93) TCGA-VQ-A8P2-01 5 176524578 176524578 C T FGFR4 Silent p.D770D 0.33 TCGA-VQ-A8P2-01 5 176821195 176821195 G A SLC34A1 Silent p.T391T 0.48 TCGA-VQ-A8P2-01 5 176824846 176824846 C T SLC34A1 Silent p.C493C 0.08 TCGA-VQ-A8P2-01 5 176859781 176859781 C T GRK6 Silent p.C138C 0.47 TCGA-VQ-A8P2-01 5 176895200 176895200 G A DBN1 Missense_Mutation p.S57L 0.42 tolerated(0.05) possibly_damaging(0.861) TCGA-VQ-A8P2-01 5 176932071 176932071 G T DOK3 Missense_Mutation p.S194Y 0.29 deleterious(0.01) possibly_damaging(0.547) TCGA-VQ-A8P2-01 5 176958332 176958332 G A FAM193B Intron 0.50 TCGA-VQ-A8P2-01 5 177171933 177171933 G A FAM153A Missense_Mutation p.L22F 0.12 deleterious_low_confidence(0) possibly_damaging(0.765) TCGA-VQ-A8P2-01 5 177546865 177546865 C T N4BP3 Missense_Mutation p.A94V 0.26 tolerated(0.4) possibly_damaging(0.756) TCGA-VQ-A8P2-01 5 178045754 178045754 T C CLK4 Missense_Mutation p.N63D 0.39 tolerated(0.22) benign(0.195) TCGA-VQ-A8P2-01 5 178311127 178311127 T G ZNF354B Silent p.T558T 0.39 TCGA-VQ-A8P2-01 5 178392252 178392252 C T ZNF454 Nonsense_Mutation p.R283* 0.27 TCGA-VQ-A8P2-01 5 178415974 178415974 C T GRM6 Missense_Mutation p.R439Q 0.40 tolerated(0.19) benign(0.015) TCGA-VQ-A8P2-01 5 178506622 178506622 G A ZNF354C Missense_Mutation p.V397I 0.37 deleterious(0.04) benign(0.002) TCGA-VQ-A8P2-01 5 178585753 178585753 C T ADAMTS2 Missense_Mutation p.R368Q 0.14 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 5 178585754 178585754 G A ADAMTS2 Missense_Mutation p.R368W 0.38 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 5 178608111 178608111 C T ADAMTS2 Missense_Mutation p.V313M 0.15 deleterious(0.01) probably_damaging(0.983) TCGA-VQ-A8P2-01 5 178699925 178699925 C A ADAMTS2 Missense_Mutation p.Q225H 0.37 tolerated(0.39) benign(0.004) TCGA-VQ-A8P2-01 5 179149920 179149920 T - CANX Frame_Shift_Del p.F435Lfs*12 0.29 TCGA-VQ-A8P2-01 5 179192339 179192339 A G MAML1 Missense_Mutation p.T110A 0.31 deleterious(0.03) benign(0.04) TCGA-VQ-A8P2-01 5 179218924 179218924 G A LTC4S 5'Flank 0.54 TCGA-VQ-A8P2-01 5 179315141 179315141 C T TBC1D9B Missense_Mutation p.G406R 0.33 tolerated(0.41) benign(0.001) TCGA-VQ-A8P2-01 5 179763571 179763571 G A GFPT2 Missense_Mutation p.A41V 0.11 deleterious(0.02) benign(0.265) TCGA-VQ-A8P2-01 5 180668824 180668824 G T GNB2L1 Intron 0.46 TCGA-VQ-A8P2-01 5 182248 182248 C T PLEKHG4B Missense_Mutation p.S1209L 0.32 tolerated(0.39) benign(0.07) TCGA-VQ-A8P2-01 5 1879651 1879651 G A IRX4 Missense_Mutation p.R235W 0.38 deleterious(0) benign(0.004) TCGA-VQ-A8P2-01 5 19483412 19483412 A G CDH18 Missense_Mutation p.L627P 0.11 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 5 21783500 21783500 G A CDH12 Nonsense_Mutation p.Q454* 0.32 TCGA-VQ-A8P2-01 5 235262 235262 C T SDHA Silent p.G356G 0.44 TCGA-VQ-A8P2-01 5 24511480 24511480 C T CDH10 Missense_Mutation p.V320M 0.41 tolerated(0.21) benign(0.004) TCGA-VQ-A8P2-01 5 24535321 24535321 C A CDH10 Missense_Mutation p.Q238H 0.37 deleterious(0) probably_damaging(0.988) TCGA-VQ-A8P2-01 5 24537769 24537769 T C CDH10 Silent p.Q82Q 0.22 TCGA-VQ-A8P2-01 5 26885916 26885916 G A CDH9 Silent p.T563T 0.33 TCGA-VQ-A8P2-01 5 306814 306814 C T PDCD6 Silent p.Y102Y 0.45 TCGA-VQ-A8P2-01 5 31294083 31294083 G T CDH6 Missense_Mutation p.Q81H 0.15 tolerated(0.59) possibly_damaging(0.715) TCGA-VQ-A8P2-01 5 31318059 31318059 T C CDH6 Intron 0.32 TCGA-VQ-A8P2-01 5 31322962 31322962 A - CDH6 Frame_Shift_Del p.E643Sfs*3 0.13 TCGA-VQ-A8P2-01 5 31323239 31323239 G A CDH6 Missense_Mutation p.D733N 0.19 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8P2-01 5 32093114 32093114 C T PDZD2 Missense_Mutation p.A2610V 0.37 tolerated(0.39) benign(0.191) TCGA-VQ-A8P2-01 5 32388652 32388652 G A ZFR Silent p.L757L 0.29 TCGA-VQ-A8P2-01 5 33453514 33453514 G T TARS Missense_Mutation p.Q183H 0.07 deleterious(0) possibly_damaging(0.873) TCGA-VQ-A8P2-01 5 33461303 33461303 C T TARS Missense_Mutation p.T518M 0.45 tolerated(0.19) possibly_damaging(0.671) TCGA-VQ-A8P2-01 5 33467730 33467730 G A TARS Missense_Mutation p.G730R 0.29 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 5 33596124 33596124 C T ADAMTS12 Missense_Mutation p.G857R 0.29 deleterious(0.01) possibly_damaging(0.537) TCGA-VQ-A8P2-01 5 33662036 33662036 G A ADAMTS12 Missense_Mutation p.A342V 0.41 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8P2-01 5 33984349 33984349 G A SLC45A2 Missense_Mutation p.L114F 0.14 deleterious(0) probably_damaging(0.984) TCGA-VQ-A8P2-01 5 33997188 33997188 A G AMACR Intron 0.44 TCGA-VQ-A8P2-01 5 34867007 34867007 G A TTC23L Missense_Mutation p.A225T 0.55 deleterious(0.05) possibly_damaging(0.535) TCGA-VQ-A8P2-01 5 35003884 35003884 C T AGXT2 Missense_Mutation p.G474D 0.30 deleterious(0) probably_damaging(0.967) TCGA-VQ-A8P2-01 5 35659201 35659201 G A SPEF2 Missense_Mutation p.M353I 0.23 tolerated(0.09) benign(0.422) TCGA-VQ-A8P2-01 5 35875697 35875697 T - IL7R Intron 0.30 TCGA-VQ-A8P2-01 5 35876343 35876343 G A IL7R Missense_Mutation p.A379T 0.48 tolerated(0.55) benign(0.005) TCGA-VQ-A8P2-01 5 36038017 36038017 C A UGT3A2 Missense_Mutation p.D393Y 0.25 deleterious(0) probably_damaging(0.994) TCGA-VQ-A8P2-01 5 36039718 36039718 G A UGT3A2 Silent p.I312I 0.30 TCGA-VQ-A8P2-01 5 36064386 36064386 G T UGT3A2 Missense_Mutation p.T54N 0.08 deleterious(0.02) possibly_damaging(0.876) TCGA-VQ-A8P2-01 5 36182101 36182101 C T SKP2 Nonsense_Mutation p.R415* 0.39 TCGA-VQ-A8P2-01 5 36257608 36257608 C T RANBP3L Silent p.K265K 0.37 TCGA-VQ-A8P2-01 5 36265096 36265096 C T RANBP3L Missense_Mutation p.E174K 0.38 tolerated(0.2) benign(0.033) TCGA-VQ-A8P2-01 5 36986016 36986016 T C NIPBL Missense_Mutation p.S912P 0.44 deleterious_low_confidence(0.02) benign(0.191) TCGA-VQ-A8P2-01 5 37164388 37164388 G A C5orf42 Silent p.F2525F 0.23 TCGA-VQ-A8P2-01 5 37184973 37184973 T C C5orf42 Silent p.G1466G 0.38 TCGA-VQ-A8P2-01 5 37301584 37301584 C A NUP155 Missense_Mutation p.Q1172H 0.10 deleterious(0.02) probably_damaging(0.928) TCGA-VQ-A8P2-01 5 37371154 37371154 G A NUP155 5'UTR 0.53 TCGA-VQ-A8P2-01 5 38427273 38427273 G A EGFLAM Missense_Mutation p.S658N 0.36 tolerated(0.07) probably_damaging(0.997) TCGA-VQ-A8P2-01 5 38876460 38876460 C A OSMR Silent p.S77S 0.10 TCGA-VQ-A8P2-01 5 38881774 38881774 C T OSMR Missense_Mutation p.T109I 0.41 tolerated(0.06) benign(0.059) TCGA-VQ-A8P2-01 5 38904527 38904527 C T OSMR Nonsense_Mutation p.R403* 0.31 TCGA-VQ-A8P2-01 5 38917658 38917658 G T OSMR Missense_Mutation p.E432D 0.37 tolerated(0.45) benign(0.014) TCGA-VQ-A8P2-01 5 38931989 38931989 G A OSMR Silent p.S739S 0.44 TCGA-VQ-A8P2-01 5 38958790 38958790 G A RICTOR Silent p.L774L 0.30 TCGA-VQ-A8P2-01 5 39341718 39341718 G A C9 Missense_Mutation p.P90S 0.14 tolerated(0.19) possibly_damaging(0.718) TCGA-VQ-A8P2-01 5 39383358 39383358 G T DAB2 Missense_Mutation p.L235M 0.09 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 5 40692062 40692062 G A PTGER4 Missense_Mutation p.R350H 0.41 deleterious(0) possibly_damaging(0.696) TCGA-VQ-A8P2-01 5 41055912 41055912 A G MROH2B Missense_Mutation p.V322A 0.55 deleterious(0.01) benign(0.029) TCGA-VQ-A8P2-01 5 41058177 41058177 G T MROH2B Missense_Mutation p.F248L 0.14 tolerated(0.16) possibly_damaging(0.835) TCGA-VQ-A8P2-01 5 41862818 41862818 C T OXCT1 Missense_Mutation p.R38H 0.24 tolerated(0.26) benign(0.001) TCGA-VQ-A8P2-01 5 43280395 43280395 C T NIM1K Missense_Mutation p.P292L 0.57 tolerated(0.1) benign(0.003) TCGA-VQ-A8P2-01 5 434094 434094 G A AHRR Silent p.R435R 0.25 TCGA-VQ-A8P2-01 5 43655996 43655996 C T NNT Missense_Mutation p.A705V 0.09 deleterious(0.02) probably_damaging(0.999) TCGA-VQ-A8P2-01 5 45267332 45267332 G A HCN1 Missense_Mutation p.R548C 0.35 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 5 453724 453724 G A EXOC3 Missense_Mutation p.V202I 0.48 tolerated(0.22) probably_damaging(0.935) TCGA-VQ-A8P2-01 5 45695923 45695923 G A HCN1 Silent p.Y91Y 0.61 TCGA-VQ-A8P2-01 5 476420 476420 C A SLC9A3 Missense_Mutation p.R655M 0.18 tolerated(0.14) possibly_damaging(0.903) TCGA-VQ-A8P2-01 5 476455 476455 C T SLC9A3 Silent p.T643T 0.31 TCGA-VQ-A8P2-01 5 477549 477549 C T SLC9A3 Missense_Mutation p.R553H 0.38 deleterious(0.04) probably_damaging(0.953) TCGA-VQ-A8P2-01 5 49695732 49695732 G A EMB Silent p.S309S 0.31 TCGA-VQ-A8P2-01 5 49699248 49699248 C A EMB Missense_Mutation p.G214V 0.35 tolerated(0.11) possibly_damaging(0.529) TCGA-VQ-A8P2-01 5 50090689 50090689 C T PARP8 Missense_Mutation p.S289L 0.38 tolerated_low_confidence(0.09) benign(0.042) TCGA-VQ-A8P2-01 5 5209223 5209223 G A ADAMTS16 Missense_Mutation p.C490Y 0.31 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 5 52183698 52183698 C T ITGA1 Silent p.V275V 0.10 TCGA-VQ-A8P2-01 5 52362994 52362995 - A ITGA2 Frame_Shift_Ins p.I666Nfs*24 0.28 TCGA-VQ-A8P2-01 5 52780864 52780865 - A FST Frame_Shift_Ins p.C256Mfs*16 0.24 TCGA-VQ-A8P2-01 5 53751920 53751920 G A HSPB3 Missense_Mutation p.G101R 0.28 tolerated(0.11) probably_damaging(0.983) TCGA-VQ-A8P2-01 5 54581549 54581549 G A DHX29 Missense_Mutation p.P403S 0.46 tolerated(0.44) benign(0.006) TCGA-VQ-A8P2-01 5 54941647 54941647 G T SLC38A9 Silent p.L379L 0.43 TCGA-VQ-A8P2-01 5 54960630 54960630 A G SLC38A9 Silent p.F196F 0.11 TCGA-VQ-A8P2-01 5 55059876 55059876 C A DDX4 Missense_Mutation p.S106R 0.33 tolerated_low_confidence(0.05) benign(0.128) TCGA-VQ-A8P2-01 5 55407217 55407217 G A ANKRD55 Missense_Mutation p.A453V 0.33 tolerated_low_confidence(0.07) benign(0.004) TCGA-VQ-A8P2-01 5 57752778 57752778 T A PLK2 Missense_Mutation p.T384S 0.13 tolerated(0.27) benign(0.036) TCGA-VQ-A8P2-01 5 57753012 57753012 A - PLK2 Frame_Shift_Del p.L335Cfs*68 0.38 TCGA-VQ-A8P2-01 5 58021884 58021884 C T RAB3C Missense_Mutation p.A103V 0.36 deleterious(0) probably_damaging(0.985) TCGA-VQ-A8P2-01 5 58021940 58021940 C T RAB3C Nonsense_Mutation p.Q122* 0.45 TCGA-VQ-A8P2-01 5 58270808 58270808 G A PDE4D Missense_Mutation p.R705C 0.13 deleterious_low_confidence(0) probably_damaging(1) TCGA-VQ-A8P2-01 5 60063706 60063706 C A ELOVL7 Missense_Mutation p.G94C 0.10 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8P2-01 5 61654029 61654029 C T KIF2A Missense_Mutation p.P259S 0.16 deleterious(0) probably_damaging(0.967) TCGA-VQ-A8P2-01 5 63256555 63256555 G A HTR1A Missense_Mutation p.A331V 0.41 tolerated(0.06) benign(0.172) TCGA-VQ-A8P2-01 5 63257294 63257294 C A HTR1A Missense_Mutation p.V85L 0.36 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 5 63257451 63257451 G A HTR1A Silent p.T32T 0.09 TCGA-VQ-A8P2-01 5 64824340 64824340 G A CENPK Missense_Mutation p.T179I 0.23 deleterious(0.01) benign(0.016) TCGA-VQ-A8P2-01 5 65088301 65088301 C T NLN Missense_Mutation p.A449V 0.31 deleterious(0) probably_damaging(0.985) TCGA-VQ-A8P2-01 5 65321330 65321330 G A ERBB2IP Silent p.T280T 0.38 TCGA-VQ-A8P2-01 5 6605402 6605402 T C NSUN2 Missense_Mutation p.N574S 0.34 deleterious(0) probably_damaging(0.983) TCGA-VQ-A8P2-01 5 6620376 6620376 G A NSUN2 Missense_Mutation p.R220C 0.13 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 5 66445330 66445330 C T MAST4 Nonsense_Mutation p.R1070* 0.45 TCGA-VQ-A8P2-01 5 66459081 66459081 C T MAST4 Silent p.L1358L 0.34 TCGA-VQ-A8P2-01 5 66460075 66460075 C T MAST4 Nonsense_Mutation p.R1690* 0.29 TCGA-VQ-A8P2-01 5 66461496 66461496 G A MAST4 Silent p.P2163P 0.50 TCGA-VQ-A8P2-01 5 67569269 67569269 C T PIK3R1 Missense_Mutation p.P129L 0.31 tolerated(0.05) probably_damaging(0.969) TCGA-VQ-A8P2-01 5 67588967 67588967 G T PIK3R1 Missense_Mutation p.G353V 0.38 deleterious(0) probably_damaging(0.993) TCGA-VQ-A8P2-01 5 68411812 68411812 C T SLC30A5 Silent p.V281V 0.33 TCGA-VQ-A8P2-01 5 68581211 68581211 C A CCDC125 Nonsense_Mutation p.E395* 0.34 TCGA-VQ-A8P2-01 5 68709944 68709944 C A RAD17 Missense_Mutation p.S624Y 0.44 tolerated(0.05) benign(0.044) TCGA-VQ-A8P2-01 5 70751756 70751756 G A BDP1 Missense_Mutation p.G18S 0.44 tolerated(0.09) possibly_damaging(0.723) TCGA-VQ-A8P2-01 5 70786853 70786853 G A BDP1 Missense_Mutation p.C512Y 0.39 tolerated(0.08) benign(0.005) TCGA-VQ-A8P2-01 5 70810843 70810843 C A BDP1 Missense_Mutation p.P1515T 0.44 tolerated(0.06) probably_damaging(0.999) TCGA-VQ-A8P2-01 5 70939714 70939714 G A MCCC2 Missense_Mutation p.A381T 0.35 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-VQ-A8P2-01 5 71491542 71491542 A C MAP1B Missense_Mutation p.K787T 0.42 unknown(0) TCGA-VQ-A8P2-01 5 71493572 71493572 G T MAP1B Missense_Mutation p.D1464Y 0.15 possibly_damaging(0.898) TCGA-VQ-A8P2-01 5 71494568 71494568 T C MAP1B Missense_Mutation p.Y1796H 0.45 benign(0.361) TCGA-VQ-A8P2-01 5 71495917 71495918 - A MAP1B Frame_Shift_Ins p.P2248Afs*15 0.26 TCGA-VQ-A8P2-01 5 71740081 71740081 G A ZNF366 Silent p.A579A 0.39 TCGA-VQ-A8P2-01 5 71752302 71752302 T C ZNF366 Missense_Mutation p.S485G 0.34 deleterious(0.02) possibly_damaging(0.509) TCGA-VQ-A8P2-01 5 71752332 71752332 G A ZNF366 Missense_Mutation p.R475C 0.10 deleterious(0) probably_damaging(0.944) TCGA-VQ-A8P2-01 5 71756466 71756466 G A ZNF366 Silent p.C286C 0.27 TCGA-VQ-A8P2-01 5 72168474 72168474 C T TNPO1 Missense_Mutation p.A202V 0.35 deleterious(0.01) possibly_damaging(0.808) TCGA-VQ-A8P2-01 5 73931915 73931915 G A ENC1 Silent p.I132I 0.46 TCGA-VQ-A8P2-01 5 73932233 73932233 G T ENC1 Silent p.S26S 0.39 TCGA-VQ-A8P2-01 5 74034228 74034228 C T GFM2 Missense_Mutation p.R412H 0.43 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 5 74034392 74034392 A - GFM2 Frame_Shift_Del p.F385Lfs*9 0.26 TCGA-VQ-A8P2-01 5 74325418 74325418 G A GCNT4 Missense_Mutation p.L149F 0.45 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 5 74647290 74647290 A C HMGCR Missense_Mutation p.N411H 0.31 tolerated(0.2) benign(0.001) TCGA-VQ-A8P2-01 5 74892279 74892279 C T POLK Silent p.A587A 0.32 TCGA-VQ-A8P2-01 5 76349929 76349929 G A AGGF1 Missense_Mutation p.R536H 0.44 deleterious(0.02) probably_damaging(0.961) TCGA-VQ-A8P2-01 5 7690936 7690936 C T ADCY2 Missense_Mutation p.R285W 0.38 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 5 78076197 78076197 G T ARSB 3'UTR 0.15 TCGA-VQ-A8P2-01 5 78586029 78586029 T C JMY Missense_Mutation p.M431T 0.42 tolerated(0.55) possibly_damaging(0.679) TCGA-VQ-A8P2-01 5 7866771 7866771 G A FASTKD3 Nonsense_Mutation p.Q476* 0.26 TCGA-VQ-A8P2-01 5 7875407 7875407 G A MTRR Missense_Mutation p.G134E 0.36 tolerated(0.14) probably_damaging(1) TCGA-VQ-A8P2-01 5 7897197 7897197 C A MTRR Missense_Mutation p.L624I 0.36 tolerated(0.09) benign(0.397) TCGA-VQ-A8P2-01 5 79026526 79026526 C T CMYA5 Silent p.A646A 0.35 TCGA-VQ-A8P2-01 5 79027740 79027740 C T CMYA5 Missense_Mutation p.A1051V 0.53 benign(0.111) TCGA-VQ-A8P2-01 5 79028132 79028132 A G CMYA5 Missense_Mutation p.K1182E 0.11 benign(0.001) TCGA-VQ-A8P2-01 5 79441997 79441997 C T SERINC5 Missense_Mutation p.G385D 0.15 tolerated(0.47) benign(0.098) TCGA-VQ-A8P2-01 5 79744116 79744116 G T ZFYVE16 Missense_Mutation p.R999M 0.18 deleterious(0.02) benign(0.049) TCGA-VQ-A8P2-01 5 80057492 80057492 A - MSH3 Frame_Shift_Del p.K632Nfs*9 0.11 TCGA-VQ-A8P2-01 5 80547074 80547074 C A CKMT2 Silent p.V41V 0.33 TCGA-VQ-A8P2-01 5 80608366 80608366 G A ZCCHC9 Missense_Mutation p.R234Q 0.10 tolerated(1) benign(0.006) TCGA-VQ-A8P2-01 5 81571920 81571920 A G RPS23 3'UTR 0.36 TCGA-VQ-A8P2-01 5 82815244 82815244 G A VCAN Missense_Mutation p.M373I 0.31 tolerated(0.78) benign(0.001) TCGA-VQ-A8P2-01 5 82833859 82833859 A C VCAN Missense_Mutation p.E1679D 0.43 tolerated(0.16) benign(0.039) TCGA-VQ-A8P2-01 5 82836759 82836759 A G VCAN Missense_Mutation p.Y2646C 0.34 tolerated(0.09) possibly_damaging(0.827) TCGA-VQ-A8P2-01 5 82875843 82875843 G A VCAN Missense_Mutation p.G3309R 0.08 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 5 83680232 83680232 C T EDIL3 5'UTR 0.15 TCGA-VQ-A8P2-01 5 85578533 85578533 G A NBPF22P RNA 0.15 TCGA-VQ-A8P2-01 5 88057087 88057087 G A MEF2C Missense_Mutation p.S106F 0.43 deleterious(0) unknown(0) TCGA-VQ-A8P2-01 5 89924549 89924549 C T GPR98 Missense_Mutation p.T470I 0.41 benign(0.014) TCGA-VQ-A8P2-01 5 90008146 90008146 A G GPR98 Missense_Mutation p.I3029V 0.33 benign(0.105) TCGA-VQ-A8P2-01 5 90106435 90106435 G A GPR98 Missense_Mutation p.A5120T 0.36 possibly_damaging(0.811) TCGA-VQ-A8P2-01 5 90124781 90124781 T - GPR98 Frame_Shift_Del p.F5465Lfs*13 0.10 TCGA-VQ-A8P2-01 5 92923690 92923690 C - NR2F1 Frame_Shift_Del p.L179Sfs*178 0.10 TCGA-VQ-A8P2-01 5 92924099 92924099 G A NR2F1 Missense_Mutation p.V314I 0.42 tolerated(0.1) benign(0.168) TCGA-VQ-A8P2-01 5 92929326 92929326 C T NR2F1 Silent p.C350C 0.46 TCGA-VQ-A8P2-01 5 93076989 93076989 C T POU5F2 Missense_Mutation p.R94H 0.44 deleterious(0.03) benign(0) TCGA-VQ-A8P2-01 5 94027789 94027789 C T ANKRD32 Silent p.G841G 0.31 TCGA-VQ-A8P2-01 5 94253677 94253677 G A MCTP1 Missense_Mutation p.T425M 0.50 tolerated_low_confidence(0.13) benign(0.142) TCGA-VQ-A8P2-01 5 94838700 94838700 C T TTC37 Silent p.E1075E 0.43 TCGA-VQ-A8P2-01 5 94956189 94956189 C T GPR150 Silent p.G70G 0.18 TCGA-VQ-A8P2-01 5 94990071 94990071 G T RFESD Missense_Mutation p.E123D 0.32 deleterious(0) probably_damaging(0.971) TCGA-VQ-A8P2-01 5 95224537 95224537 G A ELL2 3'UTR 0.14 TCGA-VQ-A8P2-01 5 95234463 95234463 G A ELL2 Nonsense_Mutation p.R336* 0.29 TCGA-VQ-A8P2-01 5 96093305 96093305 C A CAST Missense_Mutation p.L553I 0.19 tolerated(0.1) possibly_damaging(0.499) TCGA-VQ-A8P2-01 5 96235869 96235869 G A ERAP2 Silent p.S516S 0.32 TCGA-VQ-A8P2-01 5 96342194 96342194 G A LNPEP Silent p.S670S 0.36 TCGA-VQ-A8P2-01 5 96364327 96364327 G A LNPEP 3'UTR 0.44 TCGA-VQ-A8P2-01 5 96503144 96503145 - A RIOK2 Intron 0.34 TCGA-VQ-A8P2-01 5 96504524 96504524 T A RIOK2 Missense_Mutation p.D271V 0.34 deleterious(0.04) benign(0.062) TCGA-VQ-A8P2-01 5 98205481 98205481 T G CHD1 Missense_Mutation p.K1362Q 0.44 tolerated(0.11) benign(0.003) TCGA-VQ-A8P2-01 5 99897774 99897774 C T FAM174A Nonsense_Mutation p.R151* 0.37 TCGA-VQ-A8P2-01 6 100062185 100062185 C T PRDM13 Silent p.G558G 0.38 TCGA-VQ-A8P2-01 6 101847134 101847134 C T GRIK2 5'UTR 0.32 TCGA-VQ-A8P2-01 6 102503432 102503432 A - GRIK2 Frame_Shift_Del p.N849Tfs*14 0.28 TCGA-VQ-A8P2-01 6 10402780 10402780 C T TFAP2A Silent p.L276L 0.44 TCGA-VQ-A8P2-01 6 10529645 10529645 C T GCNT2 Silent p.L167L 0.17 TCGA-VQ-A8P2-01 6 10556996 10556996 G A GCNT2 Intron 0.39 TCGA-VQ-A8P2-01 6 10557410 10557410 C - GCNT2 Intron 0.28 TCGA-VQ-A8P2-01 6 105581463 105581463 C T BVES Intron 0.13 TCGA-VQ-A8P2-01 6 105725992 105725992 G A PREP 3'UTR 0.42 TCGA-VQ-A8P2-01 6 106543567 106543567 T A PRDM1 Missense_Mutation p.N123K 0.37 tolerated(0.95) benign(0.003) TCGA-VQ-A8P2-01 6 106968176 106968176 G A AIM1 Silent p.P623P 0.48 TCGA-VQ-A8P2-01 6 108041977 108041977 C T SCML4 Silent p.S301S 0.11 TCGA-VQ-A8P2-01 6 108192913 108192913 C T SEC63 Missense_Mutation p.D760N 0.33 tolerated(0.46) unknown(0) TCGA-VQ-A8P2-01 6 109764592 109764592 C - SMPD2 Frame_Shift_Del p.P286Hfs*17 0.22 TCGA-VQ-A8P2-01 6 109814631 109814631 A C AK9 Missense_Mutation p.F1893V 0.45 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8P2-01 6 110300630 110300630 G A GPR6 Silent p.T105T 0.48 TCGA-VQ-A8P2-01 6 110423400 110423400 C A WASF1 Nonsense_Mutation p.E305* 0.15 TCGA-VQ-A8P2-01 6 110424599 110424599 G A WASF1 Missense_Mutation p.P292L 0.26 deleterious(0.01) unknown(0) TCGA-VQ-A8P2-01 6 110760029 110760029 T C SLC22A16 Missense_Mutation p.Y402C 0.34 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 6 111709250 111709251 - T REV3L Frame_Shift_Ins p.F301Ifs*13 0.33 TCGA-VQ-A8P2-01 6 11185727 11185727 C T NEDD9 Missense_Mutation p.A725T 0.47 deleterious(0.02) possibly_damaging(0.614) TCGA-VQ-A8P2-01 6 111894165 111894165 G A TRAF3IP2 Missense_Mutation p.S408L 0.37 deleterious(0) probably_damaging(0.955) TCGA-VQ-A8P2-01 6 112020734 112020734 G A FYN Intron 0.52 TCGA-VQ-A8P2-01 6 112390715 112390715 C A WISP3 Nonsense_Mutation p.C337* 0.39 TCGA-VQ-A8P2-01 6 112422002 112422003 - T FAM229B 3'UTR 0.26 TCGA-VQ-A8P2-01 6 112439090 112439090 G T LAMA4 Silent p.I1611I 0.19 TCGA-VQ-A8P2-01 6 114264668 114264668 G A HDAC2 Nonsense_Mutation p.R409* 0.47 TCGA-VQ-A8P2-01 6 116325095 116325095 G A FRK Silent p.T137T 0.09 TCGA-VQ-A8P2-01 6 116436918 116436918 G T NT5DC1 Silent p.V143V 0.29 TCGA-VQ-A8P2-01 6 116559392 116559392 G T NT5DC1 Missense_Mutation p.A322S 0.38 tolerated(0.28) benign(0.425) TCGA-VQ-A8P2-01 6 116784497 116784497 A G FAM26F Missense_Mutation p.T193A 0.08 deleterious(0.01) possibly_damaging(0.539) TCGA-VQ-A8P2-01 6 116832954 116832954 G A FAM26E Missense_Mutation p.R32H 0.37 tolerated(0.25) benign(0.246) TCGA-VQ-A8P2-01 6 116988014 116988014 T - ZUFSP Frame_Shift_Del p.K114Nfs*10 0.20 TCGA-VQ-A8P2-01 6 117113936 117113936 A T GPRC6A Missense_Mutation p.V717D 0.47 deleterious(0) possibly_damaging(0.529) TCGA-VQ-A8P2-01 6 117622279 117622279 G A ROS1 Silent p.C2197C 0.17 TCGA-VQ-A8P2-01 6 117708088 117708088 C A ROS1 Nonsense_Mutation p.G697* 0.35 TCGA-VQ-A8P2-01 6 117718078 117718078 C T ROS1 Missense_Mutation p.R260K 0.31 deleterious(0.02) probably_damaging(0.985) TCGA-VQ-A8P2-01 6 117861891 117861891 G A DCBLD1 Missense_Mutation p.V388M 0.16 deleterious(0.01) possibly_damaging(0.791) TCGA-VQ-A8P2-01 6 118228887 118228887 G A SLC35F1 5'UTR 0.26 TCGA-VQ-A8P2-01 6 118804977 118804977 G A CEP85L Silent p.C497C 0.24 TCGA-VQ-A8P2-01 6 119338015 119338015 T C FAM184A Missense_Mutation p.N476S 0.26 deleterious(0.02) benign(0.149) TCGA-VQ-A8P2-01 6 119399367 119399367 C T FAM184A Missense_Mutation p.S33N 0.62 tolerated(0.72) benign(0) TCGA-VQ-A8P2-01 6 119522419 119522419 G A MAN1A1 Missense_Mutation p.H404Y 0.29 tolerated(0.16) benign(0.001) TCGA-VQ-A8P2-01 6 121562631 121562631 C T TBC1D32 Missense_Mutation p.G742D 0.41 deleterious(0.01) benign(0.003) TCGA-VQ-A8P2-01 6 121769020 121769020 A C GJA1 Missense_Mutation p.N343H 0.29 tolerated(0.1) benign(0.318) TCGA-VQ-A8P2-01 6 122733575 122733575 A - HSF2 Frame_Shift_Del p.K51Nfs*12 0.16 TCGA-VQ-A8P2-01 6 123122520 123122520 A G SMPDL3A Silent p.L179L 0.09 TCGA-VQ-A8P2-01 6 123126210 123126210 A G SMPDL3A Missense_Mutation p.I299V 0.36 tolerated(0.08) benign(0.014) TCGA-VQ-A8P2-01 6 125231565 125231565 A - RP11-510H23.1 RNA 0.42 TCGA-VQ-A8P2-01 6 126080668 126080668 G A HEY2 Missense_Mutation p.S245N 0.12 tolerated(0.06) benign(0.004) TCGA-VQ-A8P2-01 6 127767695 127767695 T A KIAA0408 Missense_Mutation p.K590I 0.18 deleterious(0) probably_damaging(0.94) TCGA-VQ-A8P2-01 6 128134836 128134836 C T THEMIS Missense_Mutation p.R317K 0.31 deleterious(0.04) benign(0.163) TCGA-VQ-A8P2-01 6 128294227 128294227 G A PTPRK Silent p.V1409V 0.31 TCGA-VQ-A8P2-01 6 128297891 128297891 G A PTPRK Nonsense_Mutation p.R1300* 0.49 TCGA-VQ-A8P2-01 6 128319929 128319929 T A PTPRK Missense_Mutation p.D872V 0.32 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 6 128320017 128320017 G A PTPRK Missense_Mutation p.R843C 0.46 tolerated(0.05) possibly_damaging(0.862) TCGA-VQ-A8P2-01 6 128388776 128388776 G T PTPRK Missense_Mutation p.P682H 0.46 deleterious(0.01) probably_damaging(0.911) TCGA-VQ-A8P2-01 6 128561270 128561270 T C PTPRK Silent p.L201L 0.12 TCGA-VQ-A8P2-01 6 129588330 129588330 C T LAMA2 Missense_Mutation p.A763V 0.11 deleterious(0) probably_damaging(0.914) TCGA-VQ-A8P2-01 6 129618944 129618944 G A LAMA2 Missense_Mutation p.V991I 0.30 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8P2-01 6 129635867 129635867 C A LAMA2 Missense_Mutation p.P1160Q 0.31 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 6 129774143 129774143 C A LAMA2 Missense_Mutation p.S2147Y 0.33 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 6 129824362 129824362 C A LAMA2 Missense_Mutation p.D2828E 0.14 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8P2-01 6 129837377 129837377 G A LAMA2 Missense_Mutation p.R3085Q 0.17 tolerated(0.13) benign(0.039) TCGA-VQ-A8P2-01 6 130166947 130166947 G A TMEM244 Silent p.Y28Y 0.36 TCGA-VQ-A8P2-01 6 130530643 130530643 T C SAMD3 Missense_Mutation p.Q127R 0.46 deleterious_low_confidence(0.05) possibly_damaging(0.575) TCGA-VQ-A8P2-01 6 130761722 130761722 G A TMEM200A Missense_Mutation p.R52H 0.43 deleterious(0.01) probably_damaging(0.984) TCGA-VQ-A8P2-01 6 131277137 131277137 C T EPB41L2 Missense_Mutation p.M163I 0.37 tolerated(0.19) benign(0.001) TCGA-VQ-A8P2-01 6 13182828 13182828 C T PHACTR1 Missense_Mutation p.P27S 0.38 tolerated_low_confidence(0.09) probably_damaging(0.932) TCGA-VQ-A8P2-01 6 13185061 13185061 C T PHACTR1 Missense_Mutation p.S118F 0.37 deleterious(0.01) benign(0.198) TCGA-VQ-A8P2-01 6 132004203 132004203 G A ENPP3 Missense_Mutation p.A341T 0.15 deleterious(0.04) probably_damaging(0.973) TCGA-VQ-A8P2-01 6 132022466 132022466 G T OR2A4 Missense_Mutation p.L26I 0.37 deleterious(0.02) possibly_damaging(0.696) TCGA-VQ-A8P2-01 6 132032050 132032050 A G CTAGE9 Silent p.P36P 0.14 TCGA-VQ-A8P2-01 6 132054845 132054845 G A ENPP3 Missense_Mutation p.G691S 0.36 tolerated(0.11) possibly_damaging(0.694) TCGA-VQ-A8P2-01 6 132796764 132796764 T C STX7 Silent p.T41T 0.40 TCGA-VQ-A8P2-01 6 132892328 132892328 G A TAAR6 Missense_Mutation p.A290T 0.40 tolerated(0.62) benign(0.021) TCGA-VQ-A8P2-01 6 132966527 132966527 T C TAAR1 Missense_Mutation p.M206V 0.40 deleterious(0) probably_damaging(0.955) TCGA-VQ-A8P2-01 6 133091437 133091437 C T SLC18B1 Missense_Mutation p.R448Q 0.42 tolerated(0.33) benign(0.006) TCGA-VQ-A8P2-01 6 133105117 133105117 C T SLC18B1 Missense_Mutation p.V205I 0.36 tolerated(0.2) benign(0.014) TCGA-VQ-A8P2-01 6 133136450 133136450 G A RPS12 Intron 0.44 TCGA-VQ-A8P2-01 6 134494676 134494676 C T SGK1 Missense_Mutation p.G181D 0.41 tolerated(0.07) benign(0.382) TCGA-VQ-A8P2-01 6 136597624 136597624 C A BCLAF1 Missense_Mutation p.V347L 0.10 tolerated(0.3) benign(0.124) TCGA-VQ-A8P2-01 6 136599844 136599844 G A BCLAF1 Missense_Mutation p.R59C 0.27 deleterious_low_confidence(0) unknown(0) TCGA-VQ-A8P2-01 6 136926487 136926487 C T MAP3K5 Missense_Mutation p.A847T 0.38 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 6 137015287 137015287 C T MAP3K5 Missense_Mutation p.G415E 0.42 deleterious(0) possibly_damaging(0.815) TCGA-VQ-A8P2-01 6 13794168 13794168 G A MCUR1 Silent p.N289N 0.40 TCGA-VQ-A8P2-01 6 138608047 138608047 G A KIAA1244 Missense_Mutation p.A927T 0.58 tolerated(0.76) benign(0.086) TCGA-VQ-A8P2-01 6 139164332 139164332 A G ECT2L Missense_Mutation p.R187G 0.42 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 6 139165656 139165656 G A ECT2L Missense_Mutation p.G235R 0.37 tolerated(0.56) benign(0.011) TCGA-VQ-A8P2-01 6 139232478 139232478 G T REPS1 Missense_Mutation p.L667I 0.38 tolerated_low_confidence(0.14) benign(0.024) TCGA-VQ-A8P2-01 6 14135577 14135577 G A CD83 3'UTR 0.58 TCGA-VQ-A8P2-01 6 142539799 142539799 C T VTA1 3'UTR 0.29 TCGA-VQ-A8P2-01 6 143074742 143074742 C T HIVEP2 Silent p.Q2281Q 0.34 TCGA-VQ-A8P2-01 6 143093268 143093268 G A HIVEP2 Nonsense_Mutation p.Q870* 0.34 TCGA-VQ-A8P2-01 6 144086872 144086872 C T PHACTR2 Missense_Mutation p.P390L 0.41 tolerated_low_confidence(0.16) benign(0.294) TCGA-VQ-A8P2-01 6 144178445 144178445 C T LTV1 Nonsense_Mutation p.R135* 0.06 TCGA-VQ-A8P2-01 6 144854229 144854229 G T UTRN Missense_Mutation p.E2022D 0.43 tolerated(0.09) benign(0.421) TCGA-VQ-A8P2-01 6 145103188 145103188 G A UTRN Missense_Mutation p.M2921I 0.14 tolerated(0.09) benign(0.002) TCGA-VQ-A8P2-01 6 145948787 145948787 G A EPM2A Missense_Mutation p.A254V 0.35 deleterious(0.02) benign(0.271) TCGA-VQ-A8P2-01 6 146264431 146264431 G A SHPRH Silent p.L696L 0.26 TCGA-VQ-A8P2-01 6 146264882 146264882 G A SHPRH Silent p.D545D 0.20 TCGA-VQ-A8P2-01 6 146276182 146276182 A - SHPRH Frame_Shift_Del p.S93Pfs*5 0.33 TCGA-VQ-A8P2-01 6 146480543 146480543 T C GRM1 Missense_Mutation p.C254R 0.10 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 6 146865074 146865074 G A RAB32 Missense_Mutation p.E23K 0.42 tolerated(0.06) benign(0.124) TCGA-VQ-A8P2-01 6 149262440 149262440 T C UST Missense_Mutation p.V106A 0.32 deleterious(0) possibly_damaging(0.777) TCGA-VQ-A8P2-01 6 149778020 149778020 C T ZC3H12D Silent p.A154A 0.09 TCGA-VQ-A8P2-01 6 150005434 150005434 G T LATS1 Missense_Mutation p.P264H 0.12 tolerated_low_confidence(0.1) probably_damaging(0.931) TCGA-VQ-A8P2-01 6 150063644 150063644 G T NUP43 Silent p.S128S 0.42 TCGA-VQ-A8P2-01 6 151775708 151775708 G T C6orf211 Missense_Mutation p.D23Y 0.22 deleterious(0) probably_damaging(0.994) TCGA-VQ-A8P2-01 6 152485401 152485401 C A SYNE1 Missense_Mutation p.S7896I 0.27 benign(0.021) TCGA-VQ-A8P2-01 6 152529285 152529285 C T SYNE1 Missense_Mutation p.R7549H 0.10 benign(0.032) TCGA-VQ-A8P2-01 6 152615188 152615188 G A SYNE1 Silent p.S5919S 0.27 TCGA-VQ-A8P2-01 6 152665291 152665291 G T SYNE1 Silent p.A4050A 0.13 TCGA-VQ-A8P2-01 6 152690702 152690702 G A SYNE1 Silent p.I3185I 0.32 TCGA-VQ-A8P2-01 6 152712429 152712429 G A SYNE1 Missense_Mutation p.R2663W 0.31 possibly_damaging(0.893) TCGA-VQ-A8P2-01 6 152737747 152737747 G T SYNE1 Missense_Mutation p.S1942Y 0.42 possibly_damaging(0.498) TCGA-VQ-A8P2-01 6 152762329 152762329 C A SYNE1 Missense_Mutation p.S1362I 0.35 benign(0.009) TCGA-VQ-A8P2-01 6 152763367 152763367 C T SYNE1 Missense_Mutation p.R1284Q 0.35 benign(0.184) TCGA-VQ-A8P2-01 6 152780013 152780013 G A SYNE1 Missense_Mutation p.P816L 0.21 benign(0.148) TCGA-VQ-A8P2-01 6 152804219 152804219 C T SYNE1 Splice_Site p.X450_splice 0.35 TCGA-VQ-A8P2-01 6 152804262 152804262 C A SYNE1 Missense_Mutation p.E436D 0.09 benign(0.437) TCGA-VQ-A8P2-01 6 153043060 153043060 G A MYCT1 Missense_Mutation p.R127H 0.09 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 6 153311147 153311147 C T MTRF1L Silent p.T342T 0.37 TCGA-VQ-A8P2-01 6 154412297 154412297 T C OPRM1 Missense_Mutation p.L378P 0.33 deleterious(0) possibly_damaging(0.903) TCGA-VQ-A8P2-01 6 154412549 154412549 G T OPRM1 Missense_Mutation p.R462L 0.39 deleterious(0.01) possibly_damaging(0.885) TCGA-VQ-A8P2-01 6 15497056 15497056 C T JARID2 Missense_Mutation p.H534Y 0.27 tolerated(0.47) benign(0.112) TCGA-VQ-A8P2-01 6 15501607 15501607 C T JARID2 Silent p.G805G 0.30 TCGA-VQ-A8P2-01 6 15504768 15504768 C T JARID2 Missense_Mutation p.A829V 0.40 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 6 155095207 155095207 G T SCAF8 Splice_Site p.X38_splice 0.19 TCGA-VQ-A8P2-01 6 155136915 155136915 C T SCAF8 Silent p.L496L 0.54 TCGA-VQ-A8P2-01 6 155469426 155469426 C T TIAM2 Silent p.S662S 0.41 TCGA-VQ-A8P2-01 6 155757627 155757627 G T NOX3 Missense_Mutation p.F241L 0.11 tolerated(0.66) benign(0.001) TCGA-VQ-A8P2-01 6 155777009 155777009 G A NOX3 5'UTR 0.29 TCGA-VQ-A8P2-01 6 158359693 158359693 A G SNX9 Missense_Mutation p.D521G 0.51 deleterious(0.02) probably_damaging(0.998) TCGA-VQ-A8P2-01 6 158438784 158438784 G A SYNJ2 Intron 0.30 TCGA-VQ-A8P2-01 6 158449920 158449920 G A SYNJ2 Missense_Mutation p.R116H 0.15 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8P2-01 6 158492698 158492698 G A SYNJ2 Missense_Mutation p.G669S 0.36 tolerated(0.17) benign(0.271) TCGA-VQ-A8P2-01 6 158613099 158613099 C T GTF2H5 Silent p.H42H 0.22 TCGA-VQ-A8P2-01 6 158902211 158902211 C T TULP4 Missense_Mutation p.T459M 0.37 deleterious(0.02) probably_damaging(0.998) TCGA-VQ-A8P2-01 6 159049469 159049469 C T TMEM181 Missense_Mutation p.A517V 0.28 tolerated(0.22) benign(0.284) TCGA-VQ-A8P2-01 6 159205752 159205752 C T EZR Missense_Mutation p.D159N 0.48 deleterious(0.01) benign(0.054) TCGA-VQ-A8P2-01 6 159654342 159654342 G A FNDC1 Missense_Mutation p.G933E 0.37 deleterious_low_confidence(0.01) unknown(0) TCGA-VQ-A8P2-01 6 159667986 159667986 G A FNDC1 Missense_Mutation p.V1559I 0.31 deleterious(0.01) benign(0.198) TCGA-VQ-A8P2-01 6 160106000 160106000 C T SOD2 Missense_Mutation p.A137T 0.18 tolerated(0.28) benign(0.003) TCGA-VQ-A8P2-01 6 160221831 160221831 G A PNLDC1 Missense_Mutation p.R24H 0.11 tolerated(0.78) benign(0.054) TCGA-VQ-A8P2-01 6 160239671 160239671 G A PNLDC1 Silent p.A403A 0.11 TCGA-VQ-A8P2-01 6 160240107 160240107 C T PNLDC1 Nonsense_Mutation p.R452* 0.10 TCGA-VQ-A8P2-01 6 160327975 160327975 C A MAS1 5'UTR 0.33 TCGA-VQ-A8P2-01 6 160501196 160501196 A G IGF2R Missense_Mutation p.I1908V 0.07 tolerated(0.91) benign(0.001) TCGA-VQ-A8P2-01 6 160858111 160858111 T C SLC22A3 Missense_Mutation p.S386P 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A8P2-01 6 160903815 160903815 T C LPAL2 RNA 0.14 TCGA-VQ-A8P2-01 6 161032655 161032655 G T LPA Missense_Mutation p.Q848K 0.37 deleterious(0.01) possibly_damaging(0.603) TCGA-VQ-A8P2-01 6 161054846 161054846 G T LPA Missense_Mutation p.Q392K 0.22 deleterious(0.01) possibly_damaging(0.623) TCGA-VQ-A8P2-01 6 161527593 161527593 C T MAP3K4 Nonsense_Mutation p.R1302* 0.28 TCGA-VQ-A8P2-01 6 163483334 163483334 G T PACRG Missense_Mutation p.Q148H 0.49 deleterious(0.03) probably_damaging(0.992) TCGA-VQ-A8P2-01 6 163735933 163735933 G T PACRG Nonsense_Mutation p.E269* 0.13 TCGA-VQ-A8P2-01 6 163984567 163984567 C T QKI Silent p.T250T 0.16 TCGA-VQ-A8P2-01 6 165756927 165756927 C T PDE10A Missense_Mutation p.V684I 0.11 tolerated(0.51) benign(0.017) TCGA-VQ-A8P2-01 6 166580269 166580269 G A T Silent p.F94F 0.38 TCGA-VQ-A8P2-01 6 166827348 166827348 C T RPS6KA2 Silent p.P678P 0.28 TCGA-VQ-A8P2-01 6 166912107 166912107 G A RPS6KA2 Silent p.H220H 0.41 TCGA-VQ-A8P2-01 6 167550438 167550438 C A CCR6 Silent p.T240T 0.14 TCGA-VQ-A8P2-01 6 167753658 167753658 C T TTLL2 Silent p.R90R 0.44 TCGA-VQ-A8P2-01 6 167753699 167753699 T C TTLL2 Missense_Mutation p.L104P 0.41 deleterious(0.03) probably_damaging(0.978) TCGA-VQ-A8P2-01 6 168226741 168226741 G A MLLT4 5'Flank 0.44 TCGA-VQ-A8P2-01 6 168271164 168271164 G A MLLT4 Missense_Mutation p.A134T 0.38 tolerated(0.55) benign(0.008) TCGA-VQ-A8P2-01 6 168457915 168457915 G A FRMD1 Silent p.S504S 0.18 TCGA-VQ-A8P2-01 6 168457999 168457999 C A FRMD1 Silent p.G476G 0.26 TCGA-VQ-A8P2-01 6 169008886 169008886 G T SMOC2 Missense_Mutation p.A303S 0.59 tolerated(0.49) benign(0.016) TCGA-VQ-A8P2-01 6 169640596 169640596 G A THBS2 Missense_Mutation p.A328V 0.27 tolerated(0.18) benign(0.013) TCGA-VQ-A8P2-01 6 169641959 169641959 G T THBS2 Silent p.P263P 0.13 TCGA-VQ-A8P2-01 6 170591863 170591863 C T DLL1 3'UTR 0.43 TCGA-VQ-A8P2-01 6 170592855 170592855 C T DLL1 Silent p.V504V 0.33 TCGA-VQ-A8P2-01 6 17637579 17637579 C A NUP153 Missense_Mutation p.A757S 0.16 tolerated(0.63) benign(0.017) TCGA-VQ-A8P2-01 6 17688731 17688731 C T NUP153 Missense_Mutation p.R77H 0.21 tolerated(0.49) benign(0) TCGA-VQ-A8P2-01 6 18121774 18121774 G A NHLRC1 Missense_Mutation p.P355L 0.40 tolerated(1) benign(0) TCGA-VQ-A8P2-01 6 18213921 18213921 G A KDM1B Missense_Mutation p.S441N 0.43 tolerated(0.43) unknown(0) TCGA-VQ-A8P2-01 6 18258185 18258185 G A DEK Missense_Mutation p.T119I 0.39 tolerated(0.12) benign(0.011) TCGA-VQ-A8P2-01 6 20152948 20152948 C T MBOAT1 Missense_Mutation p.R51H 0.43 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 6 20546630 20546630 G A CDKAL1 Missense_Mutation p.V17M 0.13 deleterious(0.04) benign(0.053) TCGA-VQ-A8P2-01 6 21000533 21000533 G A CDKAL1 Missense_Mutation p.V329I 0.41 tolerated(0.06) possibly_damaging(0.573) TCGA-VQ-A8P2-01 6 24357847 24357847 G A DCDC2 Silent p.F44F 0.16 TCGA-VQ-A8P2-01 6 24403379 24403379 C T MRS2 Silent p.P35P 0.47 TCGA-VQ-A8P2-01 6 24520718 24520718 C T ALDH5A1 Silent p.N333N 0.45 TCGA-VQ-A8P2-01 6 24559331 24559331 C A KIAA0319 Missense_Mutation p.A882S 0.56 deleterious(0.01) possibly_damaging(0.698) TCGA-VQ-A8P2-01 6 24564429 24564429 C A KIAA0319 Splice_Site p.X811_splice 0.26 TCGA-VQ-A8P2-01 6 24596180 24596180 G A KIAA0319 Missense_Mutation p.T241I 0.34 tolerated(0.13) benign(0.004) TCGA-VQ-A8P2-01 6 24596740 24596740 G A KIAA0319 Silent p.V54V 0.39 TCGA-VQ-A8P2-01 6 24601292 24601292 G C KIAA0319 Missense_Mutation p.L14V 0.30 tolerated(0.07) probably_damaging(0.994) TCGA-VQ-A8P2-01 6 24781736 24781736 G A GMNN Missense_Mutation p.R54Q 0.38 tolerated(0.1) benign(0.035) TCGA-VQ-A8P2-01 6 25652562 25652562 C T SCGN 5'UTR 0.56 TCGA-VQ-A8P2-01 6 25769388 25769388 G A SLC17A4 Nonsense_Mutation p.W89* 0.27 TCGA-VQ-A8P2-01 6 25777025 25777025 G A SLC17A4 Intron 0.32 TCGA-VQ-A8P2-01 6 25850131 25850131 G A SLC17A3 Silent p.S391S 0.48 TCGA-VQ-A8P2-01 6 25851012 25851012 T C SLC17A3 Missense_Mutation p.Y269C 0.36 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8P2-01 6 25862613 25862613 T C SLC17A3 Missense_Mutation p.T51A 0.41 tolerated(0.54) benign(0.012) TCGA-VQ-A8P2-01 6 26033717 26033717 G T HIST1H2AB Missense_Mutation p.P27H 0.11 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-VQ-A8P2-01 6 26271322 26271322 G A HIST1H3G Silent p.C97C 0.12 TCGA-VQ-A8P2-01 6 26370653 26370653 G A BTN3A2 Nonsense_Mutation p.W179* 0.13 TCGA-VQ-A8P2-01 6 26426585 26426585 C T BTN2A3P RNA 0.42 TCGA-VQ-A8P2-01 6 26501980 26501980 G A BTN1A1 Missense_Mutation p.R81H 0.35 deleterious(0.03) possibly_damaging(0.79) TCGA-VQ-A8P2-01 6 2683370 2683370 C T MYLK4 Missense_Mutation p.R191H 0.26 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8P2-01 6 2685574 2685574 G A MYLK4 Silent p.Y167Y 0.06 TCGA-VQ-A8P2-01 6 27219033 27219033 G T PRSS16 Missense_Mutation p.G236V 0.66 deleterious(0.03) probably_damaging(0.991) TCGA-VQ-A8P2-01 6 27835296 27835296 G A HIST1H1B Silent p.T4T 0.15 TCGA-VQ-A8P2-01 6 27879267 27879267 G T OR2B2 Missense_Mutation p.F277L 0.43 deleterious(0) probably_damaging(0.94) TCGA-VQ-A8P2-01 6 28060515 28060515 G T ZNF165 3'Flank 0.64 TCGA-VQ-A8P2-01 6 28121706 28121706 G A ZKSCAN8 Missense_Mutation p.E550K 0.48 tolerated(0.11) possibly_damaging(0.62) TCGA-VQ-A8P2-01 6 28214867 28214867 A G ZKSCAN4 Silent p.L220L 0.38 TCGA-VQ-A8P2-01 6 28227631 28227631 C T NKAPL Missense_Mutation p.T161M 0.11 tolerated(0.07) unknown(0) TCGA-VQ-A8P2-01 6 28251948 28251948 G T PGBD1 Nonsense_Mutation p.E120* 0.31 TCGA-VQ-A8P2-01 6 28253422 28253422 G A PGBD1 Missense_Mutation p.G164E 0.34 tolerated_low_confidence(0.19) benign(0.005) TCGA-VQ-A8P2-01 6 28327577 28327577 C T ZKSCAN3 Nonsense_Mutation p.R72* 0.28 TCGA-VQ-A8P2-01 6 28871735 28871735 C T TRIM27 3'UTR 0.58 TCGA-VQ-A8P2-01 6 29080191 29080191 G A OR2J3 Missense_Mutation p.R175H 0.49 tolerated(0.55) benign(0.005) TCGA-VQ-A8P2-01 6 29274510 29274510 T C OR14J1 Missense_Mutation p.F15S 0.36 deleterious(0) probably_damaging(0.934) TCGA-VQ-A8P2-01 6 29364603 29364603 G A OR12D2 Missense_Mutation p.V43I 0.07 tolerated(1) benign(0) TCGA-VQ-A8P2-01 6 29408113 29408113 C T OR10C1 Silent p.G107G 0.41 TCGA-VQ-A8P2-01 6 29912006 29912006 C T HLA-A Missense_Mutation p.R243W 0.42 deleterious_low_confidence(0.01) probably_damaging(0.943) TCGA-VQ-A8P2-01 6 29976071 29976071 C T ZNRD1-AS1 Intron 0.34 TCGA-VQ-A8P2-01 6 30105139 30105139 A T TRIM40 Missense_Mutation p.N109I 0.44 deleterious(0.01) possibly_damaging(0.491) TCGA-VQ-A8P2-01 6 30166771 30166771 C T TRIM26 Missense_Mutation p.R37H 0.38 tolerated(0.1) probably_damaging(0.993) TCGA-VQ-A8P2-01 6 30229066 30229066 G A HCG17 Intron 0.36 TCGA-VQ-A8P2-01 6 30459324 30459324 C T HLA-E Silent p.S299S 0.39 TCGA-VQ-A8P2-01 6 30558114 30558114 C T ABCF1 Missense_Mutation p.S777F 0.14 deleterious(0) possibly_damaging(0.764) TCGA-VQ-A8P2-01 6 30570230 30570230 T C PPP1R10 Silent p.G732G 0.32 TCGA-VQ-A8P2-01 6 30572188 30572188 C T PPP1R10 Nonsense_Mutation p.W401* 0.09 TCGA-VQ-A8P2-01 6 30638601 30638601 C T DHX16 Missense_Mutation p.R192Q 0.16 tolerated(0.05) unknown(0) TCGA-VQ-A8P2-01 6 30652838 30652838 C A PPP1R18 Nonsense_Mutation p.E320* 0.08 TCGA-VQ-A8P2-01 6 30656470 30656470 G A NRM Missense_Mutation p.L253F 0.13 tolerated(0.76) benign(0.039) TCGA-VQ-A8P2-01 6 30672029 30672029 C A MDC1 Missense_Mutation p.R1644M 0.37 deleterious(0) probably_damaging(0.974) TCGA-VQ-A8P2-01 6 30673037 30673037 C T MDC1 Missense_Mutation p.R1308Q 0.37 tolerated(0.64) benign(0) TCGA-VQ-A8P2-01 6 31124668 31124668 G A CCHCR1 Silent p.L113L 0.12 TCGA-VQ-A8P2-01 6 3119729 3119729 C G BPHL Intron 0.45 TCGA-VQ-A8P2-01 6 31378916 31378916 G A MICA Silent p.Q131Q 0.50 TCGA-VQ-A8P2-01 6 31431676 31431676 C T HCP5 RNA 0.07 TCGA-VQ-A8P2-01 6 31431848 31431848 C T HCP5 RNA 0.08 TCGA-VQ-A8P2-01 6 31508145 31508145 C A DDX39B Missense_Mutation p.E55D 0.16 deleterious(0.03) benign(0.199) TCGA-VQ-A8P2-01 6 31594854 31594854 C T PRRC2A Missense_Mutation p.T390M 0.13 unknown(0) TCGA-VQ-A8P2-01 6 31608170 31608170 C A BAG6 Missense_Mutation p.V1014F 0.14 deleterious(0) benign(0.11) TCGA-VQ-A8P2-01 6 31678136 31678136 G A LY6G6F Silent p.S270S 0.46 TCGA-VQ-A8P2-01 6 31700098 31700098 C T CLIC1 Missense_Mutation p.E154K 0.15 tolerated(0.79) benign(0.227) TCGA-VQ-A8P2-01 6 31746833 31746833 G A VARS Missense_Mutation p.R1213W 0.37 deleterious(0.01) possibly_damaging(0.586) TCGA-VQ-A8P2-01 6 31747402 31747403 - G VARS Frame_Shift_Ins p.Y1091Lfs*19 0.30 TCGA-VQ-A8P2-01 6 31747500 31747500 C T VARS Missense_Mutation p.R1058Q 0.40 deleterious(0.01) probably_damaging(0.994) TCGA-VQ-A8P2-01 6 31752208 31752208 C T VARS Silent p.G513G 0.28 TCGA-VQ-A8P2-01 6 31760579 31760581 CTC - VARS In_Frame_Del p.G205del 0.42 TCGA-VQ-A8P2-01 6 31913052 31913052 G A C2 Missense_Mutation p.R726Q 0.35 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 6 31919166 31919166 G A CFB Missense_Mutation p.V1171I 0.41 tolerated(0.15) benign(0.129) TCGA-VQ-A8P2-01 6 31963845 31963845 G A C4A Missense_Mutation p.G1115D 0.20 tolerated(0.14) probably_damaging(0.993) TCGA-VQ-A8P2-01 6 32036481 32036481 G A TNXB Missense_Mutation p.P1969L 0.22 possibly_damaging(0.573) TCGA-VQ-A8P2-01 6 32063461 32063461 G A TNXB Silent p.C723C 0.45 TCGA-VQ-A8P2-01 6 32093997 32093997 C T ATF6B Silent p.K125K 0.51 TCGA-VQ-A8P2-01 6 32147321 32147321 G A RNF5 Nonsense_Mutation p.W48* 0.40 TCGA-VQ-A8P2-01 6 32188554 32188554 G A NOTCH4 Missense_Mutation p.L301F 0.39 deleterious(0.05) probably_damaging(0.984) TCGA-VQ-A8P2-01 6 32261099 32261099 G A C6orf10 Silent p.L451L 0.09 TCGA-VQ-A8P2-01 6 3273614 3273614 G A SLC22A23 Missense_Mutation p.A579V 0.29 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 6 32820913 32820913 G A TAP1 Silent p.G227G 0.16 TCGA-VQ-A8P2-01 6 32944691 32944691 C A BRD2 Missense_Mutation p.P393H 0.30 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 6 33143379 33143379 G T COL11A2 Missense_Mutation p.P697H 0.14 probably_damaging(0.95) TCGA-VQ-A8P2-01 6 33151987 33151987 C T COL11A2 Intron 0.38 TCGA-VQ-A8P2-01 6 33245554 33245554 G A B3GALT4 Missense_Mutation p.V120M 0.09 tolerated(0.11) benign(0) TCGA-VQ-A8P2-01 6 33262519 33262519 G A RGL2 Silent p.G433G 0.52 TCGA-VQ-A8P2-01 6 33283742 33283742 C A ZBTB22 Missense_Mutation p.D318Y 0.42 deleterious_low_confidence(0) possibly_damaging(0.467) TCGA-VQ-A8P2-01 6 33283898 33283898 C T ZBTB22 Missense_Mutation p.D266N 0.11 deleterious(0.05) benign(0.422) TCGA-VQ-A8P2-01 6 33380521 33380521 G A PHF1 Silent p.E96E 0.14 TCGA-VQ-A8P2-01 6 33383885 33383885 C A PHF1 3'UTR 0.33 TCGA-VQ-A8P2-01 6 33414364 33414366 GAG - SYNGAP1 In_Frame_Del p.E1201del 0.33 TCGA-VQ-A8P2-01 6 33424048 33424048 C T ZBTB9 Missense_Mutation p.R391W 0.24 deleterious(0.02) probably_damaging(0.999) TCGA-VQ-A8P2-01 6 33555555 33555555 C A GGNBP1 Intron 0.31 TCGA-VQ-A8P2-01 6 33644847 33644847 A C ITPR3 Missense_Mutation p.N1168T 0.45 deleterious(0) possibly_damaging(0.589) TCGA-VQ-A8P2-01 6 33651854 33651854 G A ITPR3 Missense_Mutation p.V1616M 0.39 deleterious(0) probably_damaging(0.975) TCGA-VQ-A8P2-01 6 33656503 33656503 G A ITPR3 Silent p.V2213V 0.22 TCGA-VQ-A8P2-01 6 34214603 34214603 G A C6orf1 Silent p.C56C 0.42 TCGA-VQ-A8P2-01 6 34512083 34512083 C T SPDEF Silent p.T50T 0.09 TCGA-VQ-A8P2-01 6 34512141 34512141 G A SPDEF Missense_Mutation p.A31V 0.35 tolerated_low_confidence(0.79) benign(0.003) TCGA-VQ-A8P2-01 6 34838694 34838694 G A UHRF1BP1 Missense_Mutation p.R1261H 0.15 deleterious(0.03) probably_damaging(0.999) TCGA-VQ-A8P2-01 6 34846292 34846292 A G TAF11 3'UTR 0.18 TCGA-VQ-A8P2-01 6 35053551 35053551 C A ANKS1A Silent p.T1047T 0.31 TCGA-VQ-A8P2-01 6 35211769 35211769 G T SCUBE3 Missense_Mutation p.D701Y 0.21 deleterious(0) probably_damaging(0.966) TCGA-VQ-A8P2-01 6 35213122 35213122 G A SCUBE3 Missense_Mutation p.R840H 0.43 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 6 35261693 35261693 G A ZNF76 Splice_Site p.X498_splice 0.35 TCGA-VQ-A8P2-01 6 35285722 35285722 C T DEF6 Missense_Mutation p.R288C 0.13 deleterious(0) probably_damaging(0.939) TCGA-VQ-A8P2-01 6 35288679 35288679 C T DEF6 Missense_Mutation p.R534C 0.19 deleterious(0) possibly_damaging(0.876) TCGA-VQ-A8P2-01 6 35436771 35436771 C A RPL10A Missense_Mutation p.P43H 0.13 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 6 35565059 35565059 G A FKBP5 Missense_Mutation p.R211W 0.40 deleterious(0) probably_damaging(0.953) TCGA-VQ-A8P2-01 6 35706178 35706178 G A ARMC12 Silent p.T136T 0.19 TCGA-VQ-A8P2-01 6 35838119 35838119 C A SRPK1 Missense_Mutation p.E310D 0.36 tolerated(0.35) benign(0.045) TCGA-VQ-A8P2-01 6 35960405 35960405 G A SLC26A8 Missense_Mutation p.P225L 0.51 deleterious(0.02) possibly_damaging(0.67) TCGA-VQ-A8P2-01 6 36566687 36566687 C T SRSF3 Missense_Mutation p.R90C 0.28 tolerated(0.1) unknown(0) TCGA-VQ-A8P2-01 6 36651985 36651985 C T CDKN1A Missense_Mutation p.A36V 0.33 tolerated(0.33) possibly_damaging(0.456) TCGA-VQ-A8P2-01 6 37141910 37141910 A G PIM1 3'UTR 0.27 TCGA-VQ-A8P2-01 6 37237414 37237414 G A TBC1D22B Missense_Mutation p.R34Q 0.51 tolerated(0.6) benign(0.095) TCGA-VQ-A8P2-01 6 37441313 37441313 G A CMTR1 Missense_Mutation p.R586H 0.26 tolerated(0.28) benign(0.007) TCGA-VQ-A8P2-01 6 37442328 37442328 G A CMTR1 Missense_Mutation p.R617H 0.11 deleterious(0.03) benign(0.346) TCGA-VQ-A8P2-01 6 38142952 38142952 G T BTBD9 Missense_Mutation p.H550N 0.30 deleterious(0) probably_damaging(0.932) TCGA-VQ-A8P2-01 6 38810458 38810458 G T DNAH8 Nonsense_Mutation p.G1325* 0.37 TCGA-VQ-A8P2-01 6 38997985 38997985 C T DNAH8 Silent p.P4430P 0.20 TCGA-VQ-A8P2-01 6 39082730 39082730 C A SAYSD1 Missense_Mutation p.G46C 0.47 deleterious(0.01) probably_damaging(0.909) TCGA-VQ-A8P2-01 6 39272407 39272407 G A KCNK17 Missense_Mutation p.T126M 0.17 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 6 39284136 39284136 C T KCNK16 Intron 0.57 TCGA-VQ-A8P2-01 6 39513399 39513399 G A KIF6 Missense_Mutation p.A416V 0.33 deleterious(0.03) benign(0.285) TCGA-VQ-A8P2-01 6 39874102 39874102 C T MOCS1 3'UTR 0.14 TCGA-VQ-A8P2-01 6 41035079 41035079 G T OARD1 Missense_Mutation p.L152I 0.24 tolerated(0.11) benign(0.022) TCGA-VQ-A8P2-01 6 4116153 4116153 G A ECI2 Silent p.C380C 0.30 TCGA-VQ-A8P2-01 6 41557819 41557819 G A FOXP4 Missense_Mutation p.R423Q 0.38 tolerated(0.24) benign(0.065) TCGA-VQ-A8P2-01 6 41617366 41617366 A G MDFI Missense_Mutation p.Q90R 0.35 deleterious(0.04) benign(0.38) TCGA-VQ-A8P2-01 6 41652349 41652349 G A TFEB Silent p.G473G 0.33 TCGA-VQ-A8P2-01 6 41773584 41773584 C T USP49 Missense_Mutation p.A380T 0.47 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A8P2-01 6 41773672 41773672 C T USP49 Silent p.P350P 0.43 TCGA-VQ-A8P2-01 6 42025190 42025190 C T TAF8 Missense_Mutation p.P143L 0.12 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 6 42034052 42034052 G A TAF8 Silent p.T164T 0.28 TCGA-VQ-A8P2-01 6 42152573 42152573 G A GUCA1B Missense_Mutation p.R195W 0.14 deleterious(0.03) possibly_damaging(0.841) TCGA-VQ-A8P2-01 6 42237048 42237048 T C TRERF1 Missense_Mutation p.H94R 0.35 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-VQ-A8P2-01 6 42237169 42237169 A G TRERF1 Missense_Mutation p.S54P 0.44 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-VQ-A8P2-01 6 42996916 42996916 C T RRP36 Nonsense_Mutation p.R244* 0.18 TCGA-VQ-A8P2-01 6 43006193 43006193 C A CUL7 Missense_Mutation p.D1613Y 0.50 deleterious(0) possibly_damaging(0.894) TCGA-VQ-A8P2-01 6 43014340 43014340 C A CUL7 Splice_Site p.X884_splice 0.53 TCGA-VQ-A8P2-01 6 43018958 43018958 G A CUL7 Silent p.P411P 0.20 TCGA-VQ-A8P2-01 6 43143591 43143591 G A SRF Missense_Mutation p.V310I 0.32 tolerated(0.68) benign(0.007) TCGA-VQ-A8P2-01 6 43155717 43155717 C T CUL9 Silent p.A616A 0.20 TCGA-VQ-A8P2-01 6 43214460 43214460 C T TTBK1 Missense_Mutation p.A21V 0.09 benign(0.026) TCGA-VQ-A8P2-01 6 43469422 43469422 G A TJAP1 Missense_Mutation p.R96H 0.75 deleterious(0.03) possibly_damaging(0.686) TCGA-VQ-A8P2-01 6 43472924 43472924 T C TJAP1 Silent p.S335S 0.38 TCGA-VQ-A8P2-01 6 43593576 43593576 G A GTPBP2 Nonsense_Mutation p.R142* 0.42 TCGA-VQ-A8P2-01 6 43613001 43613001 G A RSPH9 Missense_Mutation p.D56N 0.31 deleterious(0.02) probably_damaging(0.913) TCGA-VQ-A8P2-01 6 44081798 44081798 G T MRPL14 Missense_Mutation p.L74I 0.41 deleterious(0.03) probably_damaging(0.994) TCGA-VQ-A8P2-01 6 44200151 44200151 G T SLC29A1 Missense_Mutation p.A349S 0.36 tolerated(1) benign(0.438) TCGA-VQ-A8P2-01 6 44218919 44218919 C T HSP90AB1 Silent p.D364D 0.36 TCGA-VQ-A8P2-01 6 45480055 45480055 C T RUNX2 Missense_Mutation p.T311M 0.44 deleterious(0.01) probably_damaging(0.939) TCGA-VQ-A8P2-01 6 46135371 46135371 T C ENPP5 Missense_Mutation p.D210G 0.36 tolerated(0.17) benign(0.083) TCGA-VQ-A8P2-01 6 46657611 46657611 C T TDRD6 Silent p.D582D 0.10 TCGA-VQ-A8P2-01 6 46657807 46657807 G A TDRD6 Missense_Mutation p.E648K 0.36 deleterious(0.01) benign(0.266) TCGA-VQ-A8P2-01 6 46800839 46800839 C T MEP1A Silent p.A391A 0.37 TCGA-VQ-A8P2-01 6 47646779 47646779 C T GPR111 Missense_Mutation p.T127I 0.45 tolerated(0.39) benign(0.017) TCGA-VQ-A8P2-01 6 47647923 47647923 T C GPR111 Silent p.C196C 0.31 TCGA-VQ-A8P2-01 6 48036194 48036194 G A PTCHD4 Silent p.P66P 0.68 TCGA-VQ-A8P2-01 6 4892426 4892426 C T CDYL Silent p.P168P 0.40 TCGA-VQ-A8P2-01 6 4935784 4935784 G T CDYL Missense_Mutation p.G243W 0.14 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8P2-01 6 4937916 4937916 C T CDYL Nonsense_Mutation p.R356* 0.43 TCGA-VQ-A8P2-01 6 50696994 50696994 T C TFAP2D Silent p.A284A 0.14 TCGA-VQ-A8P2-01 6 50807915 50807915 G A TFAP2B Silent p.T329T 0.40 TCGA-VQ-A8P2-01 6 50810910 50810910 G A TFAP2B Silent p.T396T 0.54 TCGA-VQ-A8P2-01 6 51720694 51720694 C T PKHD1 Silent p.L2636L 0.23 TCGA-VQ-A8P2-01 6 51882407 51882407 C A PKHD1 Missense_Mutation p.G1801C 0.20 deleterious(0) possibly_damaging(0.873) TCGA-VQ-A8P2-01 6 51889610 51889610 G A PKHD1 Silent p.S1666S 0.43 TCGA-VQ-A8P2-01 6 51893031 51893031 C T PKHD1 Silent p.E1161E 0.43 TCGA-VQ-A8P2-01 6 52103637 52103637 G A IL17F Missense_Mutation p.P49S 0.47 tolerated(0.53) benign(0) TCGA-VQ-A8P2-01 6 52268045 52268045 C A PAQR8 Missense_Mutation p.L12M 0.50 deleterious(0.01) probably_damaging(0.946) TCGA-VQ-A8P2-01 6 52859046 52859046 G A GSTA4 5'UTR 0.46 TCGA-VQ-A8P2-01 6 52870014 52870014 C T ICK Missense_Mutation p.R611Q 0.09 deleterious(0.04) benign(0.023) TCGA-VQ-A8P2-01 6 52876675 52876675 C A ICK Missense_Mutation p.G462C 0.25 deleterious(0) benign(0.443) TCGA-VQ-A8P2-01 6 54212257 54212257 C A TINAG Missense_Mutation p.R281S 0.36 deleterious(0) benign(0.059) TCGA-VQ-A8P2-01 6 549225 549225 C T EXOC2 Missense_Mutation p.A730T 0.44 tolerated(0.4) benign(0.028) TCGA-VQ-A8P2-01 6 55039526 55039526 C T HCRTR2 Silent p.Y47Y 0.08 TCGA-VQ-A8P2-01 6 5545497 5545497 G A FARS2 Missense_Mutation p.R330H 0.09 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 6 556540 556540 C T EXOC2 Missense_Mutation p.V626M 0.31 tolerated(0.06) benign(0.036) TCGA-VQ-A8P2-01 6 55935558 55935558 C A COL21A1 Silent p.G668G 0.25 TCGA-VQ-A8P2-01 6 56044530 56044530 C A COL21A1 Missense_Mutation p.K162N 0.33 tolerated(0.22) benign(0.155) TCGA-VQ-A8P2-01 6 56362658 56362658 C T DST Missense_Mutation p.R4074H 0.30 benign(0.002) TCGA-VQ-A8P2-01 6 56382028 56382028 C T DST Missense_Mutation p.A3486T 0.32 benign(0.001) TCGA-VQ-A8P2-01 6 56391355 56391355 T - DST Frame_Shift_Del p.K3355Rfs*16 0.33 TCGA-VQ-A8P2-01 6 56472116 56472116 G A DST Intron 0.41 TCGA-VQ-A8P2-01 6 56472483 56472483 C T DST Intron 0.43 TCGA-VQ-A8P2-01 6 56483207 56483207 G A DST Intron 0.44 TCGA-VQ-A8P2-01 6 598904 598904 G A EXOC2 Missense_Mutation p.A309V 0.32 tolerated(0.05) probably_damaging(0.935) TCGA-VQ-A8P2-01 6 5999324 5999324 C A NRN1 Missense_Mutation p.G105V 0.19 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 6 619531 619531 C T EXOC2 Silent p.S145S 0.19 TCGA-VQ-A8P2-01 6 62611243 62611243 G A KHDRBS2 Missense_Mutation p.R173C 0.32 deleterious(0.01) probably_damaging(0.959) TCGA-VQ-A8P2-01 6 64356524 64356524 G T PHF3 Missense_Mutation p.G23V 0.36 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8P2-01 6 64413548 64413548 C T PHF3 Silent p.C1118C 0.11 TCGA-VQ-A8P2-01 6 656885 656885 G A HUS1B Silent p.S20S 0.40 TCGA-VQ-A8P2-01 6 66205273 66205273 G T EYS Missense_Mutation p.L11M 0.40 tolerated_low_confidence(0.28) benign(0.208) TCGA-VQ-A8P2-01 6 69349192 69349192 G A BAI3 Missense_Mutation p.D209N 0.08 tolerated(0.42) benign(0.028) TCGA-VQ-A8P2-01 6 69653882 69653882 C T BAI3 Silent p.C397C 0.45 TCGA-VQ-A8P2-01 6 70048837 70048837 C T BAI3 Missense_Mutation p.T1073M 0.45 tolerated(0.07) probably_damaging(0.998) TCGA-VQ-A8P2-01 6 70049308 70049308 G A BAI3 Missense_Mutation p.R1124H 0.49 deleterious(0.01) probably_damaging(0.998) TCGA-VQ-A8P2-01 6 70070928 70070928 G T BAI3 Missense_Mutation p.G1255C 0.36 tolerated(0.18) benign(0.436) TCGA-VQ-A8P2-01 6 70639374 70639374 G T COL19A1 Nonsense_Mutation p.E150* 0.20 TCGA-VQ-A8P2-01 6 70881896 70881896 T G COL19A1 Missense_Mutation p.F870C 0.41 tolerated(0.13) probably_damaging(0.997) TCGA-VQ-A8P2-01 6 70916936 70916936 C T COL19A1 Silent p.L1129L 0.08 TCGA-VQ-A8P2-01 6 7229251 7229251 C T RREB1 Missense_Mutation p.R307W 0.20 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 6 7229630 7229630 G T RREB1 Missense_Mutation p.S433I 0.42 deleterious(0.03) possibly_damaging(0.568) TCGA-VQ-A8P2-01 6 7231823 7231823 G A RREB1 Missense_Mutation p.R1164H 0.43 tolerated(0.08) benign(0.027) TCGA-VQ-A8P2-01 6 72806829 72806829 G A RIMS1 Silent p.A141A 0.22 TCGA-VQ-A8P2-01 6 72889441 72889441 T A RIMS1 Missense_Mutation p.L212H 0.52 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 6 72974703 72974703 T G RIMS1 Missense_Mutation p.L1048V 0.42 tolerated(0.09) probably_damaging(0.931) TCGA-VQ-A8P2-01 6 73843172 73843172 C T KCNQ5 Missense_Mutation p.R445C 0.21 deleterious(0.02) benign(0.429) TCGA-VQ-A8P2-01 6 74331591 74331591 A C SLC17A5 Missense_Mutation p.F305C 0.39 deleterious(0) probably_damaging(0.988) TCGA-VQ-A8P2-01 6 7556048 7556048 C T DSP Nonsense_Mutation p.Q90* 0.42 TCGA-VQ-A8P2-01 6 7558383 7558383 G A DSP Missense_Mutation p.R103Q 0.38 benign(0.001) TCGA-VQ-A8P2-01 6 7575688 7575688 G A DSP Missense_Mutation p.R866H 0.44 probably_damaging(0.996) TCGA-VQ-A8P2-01 6 75812392 75812392 C T COL12A1 Missense_Mutation p.R2779H 0.34 probably_damaging(0.983) TCGA-VQ-A8P2-01 6 76024480 76024480 C T FILIP1 Silent p.E356E 0.07 TCGA-VQ-A8P2-01 6 76063394 76063394 G A FILIP1 Missense_Mutation p.R164C 0.47 deleterious(0.02) probably_damaging(1) TCGA-VQ-A8P2-01 6 76640679 76640679 G T IMPG1 Missense_Mutation p.A745D 0.32 deleterious(0.02) benign(0.03) TCGA-VQ-A8P2-01 6 7861792 7861792 G A BMP6 Silent p.Q322Q 0.26 TCGA-VQ-A8P2-01 6 79577535 79577535 C T IRAK1BP1 Missense_Mutation p.A81V 0.38 tolerated(0.57) benign(0.132) TCGA-VQ-A8P2-01 6 79707269 79707269 C A PHIP Missense_Mutation p.G688V 0.22 deleterious(0.01) probably_damaging(0.996) TCGA-VQ-A8P2-01 6 79713474 79713474 G A PHIP Silent p.G542G 0.09 TCGA-VQ-A8P2-01 6 79735265 79735265 C T PHIP Nonsense_Mutation p.W298* 0.30 TCGA-VQ-A8P2-01 6 79924727 79924727 T C HMGN3 Missense_Mutation p.T10A 0.49 tolerated(1) benign(0.001) TCGA-VQ-A8P2-01 6 79944233 79944234 - T HMGN3 Intron 0.32 TCGA-VQ-A8P2-01 6 83830456 83830456 C T DOPEY1 Nonsense_Mutation p.Q349* 0.31 TCGA-VQ-A8P2-01 6 83872513 83872513 C T DOPEY1 Nonsense_Mutation p.R2323* 0.41 TCGA-VQ-A8P2-01 6 83885712 83885712 C A PGM3 Missense_Mutation p.G394V 0.40 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 6 83947465 83947465 G A ME1 Silent p.L333L 0.35 TCGA-VQ-A8P2-01 6 84634231 84634231 A - CYB5R4 Frame_Shift_Del p.E248Rfs*12 0.52 TCGA-VQ-A8P2-01 6 85473684 85473684 G A TBX18 Silent p.G72G 0.42 TCGA-VQ-A8P2-01 6 86181055 86181055 G A NT5E Silent p.S221S 0.35 TCGA-VQ-A8P2-01 6 86200375 86200375 G A NT5E Missense_Mutation p.G454R 0.38 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 6 87725673 87725673 C T HTR1E Silent p.H207H 0.39 TCGA-VQ-A8P2-01 6 87943177 87943177 G T ZNF292 Missense_Mutation p.G225C 0.40 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 6 87967849 87967849 G T ZNF292 Missense_Mutation p.S1501I 0.32 deleterious(0) possibly_damaging(0.878) TCGA-VQ-A8P2-01 6 87968179 87968179 G A ZNF292 Missense_Mutation p.G1611D 0.33 deleterious_low_confidence(0.01) benign(0.305) TCGA-VQ-A8P2-01 6 88375550 88375550 C T ORC3 Missense_Mutation p.H678Y 0.43 deleterious(0.02) benign(0.059) TCGA-VQ-A8P2-01 6 89322458 89322458 T - RNGTT Frame_Shift_Del p.R592Dfs*5 0.30 TCGA-VQ-A8P2-01 6 89862777 89862777 C A PM20D2 Nonsense_Mutation p.Y210* 0.40 TCGA-VQ-A8P2-01 6 89978736 89978736 C A GABRR2 Missense_Mutation p.S169I 0.38 deleterious(0) probably_damaging(0.987) TCGA-VQ-A8P2-01 6 90405437 90405437 G A MDN1 Missense_Mutation p.R3220C 0.45 benign(0.055) TCGA-VQ-A8P2-01 6 90420480 90420480 G A MDN1 Missense_Mutation p.A2562V 0.24 benign(0.007) TCGA-VQ-A8P2-01 6 90450058 90450058 T - MDN1 Frame_Shift_Del p.G1497Afs*10 0.33 TCGA-VQ-A8P2-01 6 90572133 90572133 C T CASP8AP2 RNA 0.34 TCGA-VQ-A8P2-01 6 90573000 90573000 C T CASP8AP2 RNA 0.37 TCGA-VQ-A8P2-01 6 96053638 96053638 C T MANEA Missense_Mutation p.P249L 0.08 deleterious(0.01) possibly_damaging(0.744) TCGA-VQ-A8P2-01 6 96054018 96054018 C T MANEA Nonsense_Mutation p.R376* 0.36 TCGA-VQ-A8P2-01 6 96652077 96652077 C A FUT9 Missense_Mutation p.S349Y 0.10 deleterious(0.02) benign(0.105) TCGA-VQ-A8P2-01 6 97562309 97562309 G A KLHL32 Nonsense_Mutation p.W426* 0.40 TCGA-VQ-A8P2-01 6 99283523 99283523 G A POU3F2 Silent p.P258P 0.47 TCGA-VQ-A8P2-01 6 99781357 99781358 - T FAXC Frame_Shift_Ins p.V157Sfs*9 0.31 TCGA-VQ-A8P2-01 7 100001356 100001356 C A ZCWPW1 Missense_Mutation p.E457D 0.58 tolerated(0.17) benign(0.02) TCGA-VQ-A8P2-01 7 100017452 100017452 C A ZCWPW1 Missense_Mutation p.S28I 0.40 tolerated(0.23) benign(0.025) TCGA-VQ-A8P2-01 7 100029091 100029091 C T MEPCE Missense_Mutation p.R484C 0.40 deleterious(0) probably_damaging(0.984) TCGA-VQ-A8P2-01 7 100029182 100029182 C T MEPCE Missense_Mutation p.T514I 0.31 tolerated(0.1) benign(0.008) TCGA-VQ-A8P2-01 7 100085985 100085985 C A NYAP1 Missense_Mutation p.P214H 0.10 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 7 100173865 100173865 C T LRCH4 Missense_Mutation p.R545H 0.38 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 7 100187667 100187667 C T FBXO24 Missense_Mutation p.P74L 0.16 deleterious_low_confidence(0) possibly_damaging(0.726) TCGA-VQ-A8P2-01 7 100212615 100212615 G A MOSPD3 Missense_Mutation p.V213I 0.35 tolerated(0.12) probably_damaging(0.994) TCGA-VQ-A8P2-01 7 100238644 100238644 C T TFR2 Missense_Mutation p.A81T 0.47 deleterious(0.03) possibly_damaging(0.548) TCGA-VQ-A8P2-01 7 100373130 100373130 G A ZAN Missense_Mutation p.R1986H 0.37 unknown(0) TCGA-VQ-A8P2-01 7 100377230 100377230 G A ZAN Silent p.T2159T 0.33 TCGA-VQ-A8P2-01 7 100403312 100403312 A G EPHB4 Missense_Mutation p.I830T 0.08 deleterious(0.02) possibly_damaging(0.581) TCGA-VQ-A8P2-01 7 100410389 100410389 C T EPHB4 Missense_Mutation p.A700T 0.45 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8P2-01 7 100410617 100410617 C T EPHB4 Splice_Site p.X624_splice 0.31 TCGA-VQ-A8P2-01 7 100454739 100454739 C T SLC12A9 Missense_Mutation p.P233L 0.38 tolerated(0.69) benign(0) TCGA-VQ-A8P2-01 7 100549643 100549643 C A MUC3A Missense_Mutation p.P75H 0.19 tolerated(0.12) unknown(0) TCGA-VQ-A8P2-01 7 100552318 100552318 A C MUC3A Missense_Mutation p.T357P 0.32 tolerated(0.1) benign(0.44) TCGA-VQ-A8P2-01 7 100701297 100701297 G T MUC17 Missense_Mutation p.R4485M 0.48 unknown(0) TCGA-VQ-A8P2-01 7 100731000 100731000 G A TRIM56 Missense_Mutation p.R136H 0.48 deleterious(0.04) probably_damaging(0.998) TCGA-VQ-A8P2-01 7 100731578 100731578 G A TRIM56 Missense_Mutation p.A329T 0.45 tolerated(1) benign(0.002) TCGA-VQ-A8P2-01 7 100855870 100855870 G A PLOD3 Nonsense_Mutation p.Q316* 0.37 TCGA-VQ-A8P2-01 7 100855927 100855927 G - PLOD3 Frame_Shift_Del p.R297Gfs*61 0.24 TCGA-VQ-A8P2-01 7 101200757 101200757 C A COL26A1 Missense_Mutation p.L424I 0.40 tolerated(0.05) probably_damaging(0.996) TCGA-VQ-A8P2-01 7 101845118 101845118 C T CUX1 Silent p.G858G 0.15 TCGA-VQ-A8P2-01 7 101870695 101870695 C T CUX1 Missense_Mutation p.P1071L 0.12 deleterious(0) unknown(0) TCGA-VQ-A8P2-01 7 101944480 101944480 G A SH2B2 Missense_Mutation p.A259T 0.38 tolerated(0.12) benign(0.06) TCGA-VQ-A8P2-01 7 102097875 102097875 C T ALKBH4 Missense_Mutation p.R292Q 0.29 tolerated(0.99) benign(0.001) TCGA-VQ-A8P2-01 7 102106665 102106665 C T LRWD1 Missense_Mutation p.A127V 0.37 tolerated(1) benign(0.018) TCGA-VQ-A8P2-01 7 102473297 102473297 C T FBXL13 Missense_Mutation p.G615D 0.40 deleterious(0) probably_damaging(0.964) TCGA-VQ-A8P2-01 7 102575102 102575102 C T LRRC17 Missense_Mutation p.P248S 0.34 deleterious(0) possibly_damaging(0.904) TCGA-VQ-A8P2-01 7 102738936 102738936 C A ARMC10 Missense_Mutation p.A323D 0.08 deleterious(0) probably_damaging(0.97) TCGA-VQ-A8P2-01 7 102760247 102760247 C A NAPEPLD Nonsense_Mutation p.G240* 0.43 TCGA-VQ-A8P2-01 7 102982403 102982403 T C DNAJC2 Splice_Site p.X22_splice 0.10 TCGA-VQ-A8P2-01 7 106508065 106508065 G A PIK3CG Missense_Mutation p.R20H 0.32 deleterious_low_confidence(0.01) probably_damaging(0.925) TCGA-VQ-A8P2-01 7 106509446 106509446 C T PIK3CG Silent p.Y480Y 0.41 TCGA-VQ-A8P2-01 7 106509746 106509746 C T PIK3CG Silent p.Y580Y 0.36 TCGA-VQ-A8P2-01 7 106786862 106786862 G A PRKAR2B Missense_Mutation p.A233T 0.40 deleterious(0) probably_damaging(0.986) TCGA-VQ-A8P2-01 7 106841864 106841866 ACA - HBP1 In_Frame_Del p.Q513del 0.43 TCGA-VQ-A8P2-01 7 107114615 107114615 C T GPR22 Missense_Mutation p.P37L 0.37 deleterious(0) benign(0.285) TCGA-VQ-A8P2-01 7 107335117 107335117 C T SLC26A4 Silent p.L465L 0.10 TCGA-VQ-A8P2-01 7 107435043 107435043 C A SLC26A3 Splice_Site 0.30 TCGA-VQ-A8P2-01 7 107710278 107710278 T C LAMB4 Missense_Mutation p.D726G 0.10 deleterious(0.01) possibly_damaging(0.743) TCGA-VQ-A8P2-01 7 107732113 107732113 G A LAMB4 Silent p.Y553Y 0.42 TCGA-VQ-A8P2-01 7 107824867 107824867 C T NRCAM Missense_Mutation p.A743T 0.08 deleterious(0.04) benign(0.075) TCGA-VQ-A8P2-01 7 108204853 108204853 A G THAP5 Missense_Mutation p.Y324H 0.41 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 7 111387391 111387391 G A DOCK4 Missense_Mutation p.P1500S 0.25 deleterious(0.03) benign(0.348) TCGA-VQ-A8P2-01 7 111398809 111398809 G A DOCK4 Silent p.S1391S 0.17 TCGA-VQ-A8P2-01 7 111629091 111629091 G T DOCK4 Missense_Mutation p.A148D 0.36 deleterious(0.03) benign(0.258) TCGA-VQ-A8P2-01 7 111981086 111981086 C T ZNF277 Missense_Mutation p.T390M 0.45 tolerated(0.19) benign(0.028) TCGA-VQ-A8P2-01 7 112472682 112472682 G T C7orf60 Nonsense_Mutation p.C174* 0.33 TCGA-VQ-A8P2-01 7 112723833 112723833 A G GPR85 Missense_Mutation p.V315A 0.32 tolerated(0.75) benign(0.012) TCGA-VQ-A8P2-01 7 112724397 112724397 C T GPR85 Missense_Mutation p.R127H 0.33 deleterious(0) probably_damaging(0.953) TCGA-VQ-A8P2-01 7 114298280 114298280 C T FOXP2 Nonsense_Mutation p.R501* 0.13 TCGA-VQ-A8P2-01 7 114299721 114299721 C A FOXP2 Missense_Mutation p.T572N 0.38 deleterious(0.02) probably_damaging(0.998) TCGA-VQ-A8P2-01 7 11450835 11450835 G A THSD7A Missense_Mutation p.A1266V 0.56 deleterious(0.03) benign(0.001) TCGA-VQ-A8P2-01 7 11452357 11452357 G T THSD7A Missense_Mutation p.S1203Y 0.52 deleterious(0.02) possibly_damaging(0.516) TCGA-VQ-A8P2-01 7 11468674 11468674 C A THSD7A Missense_Mutation p.S1048I 0.49 deleterious(0) probably_damaging(0.993) TCGA-VQ-A8P2-01 7 11514093 11514093 C T THSD7A Missense_Mutation p.C707Y 0.41 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 7 115580943 115580943 C T TFEC Missense_Mutation p.A236T 0.16 tolerated(0.25) benign(0.075) TCGA-VQ-A8P2-01 7 116435962 116435962 C A MET Nonsense_Mutation p.C1337* 0.43 TCGA-VQ-A8P2-01 7 116544411 116544411 G T CAPZA2 Nonsense_Mutation p.E134* 0.40 TCGA-VQ-A8P2-01 7 11676161 11676161 G A THSD7A Silent p.C206C 0.39 TCGA-VQ-A8P2-01 7 116870020 116870020 G A ST7 Missense_Mutation p.R514Q 0.40 unknown(0) TCGA-VQ-A8P2-01 7 116955339 116955339 C A WNT2 Missense_Mutation p.R125M 0.44 deleterious(0) probably_damaging(0.972) TCGA-VQ-A8P2-01 7 117374975 117374975 C T CTTNBP2 Missense_Mutation p.V1290M 0.45 tolerated(0.13) benign(0.017) TCGA-VQ-A8P2-01 7 117432218 117432218 G A CTTNBP2 Silent p.S344S 0.11 TCGA-VQ-A8P2-01 7 117831985 117831985 G A NAA38 Missense_Mutation p.D74N 0.24 deleterious(0.03) benign(0.032) TCGA-VQ-A8P2-01 7 119914695 119914695 G - KCND2 Frame_Shift_Del p.V5Wfs*41 0.31 TCGA-VQ-A8P2-01 7 120604802 120604802 C T ING3 Nonsense_Mutation p.R92* 0.37 TCGA-VQ-A8P2-01 7 120607994 120607994 G A ING3 Missense_Mutation p.R188Q 0.33 tolerated(0.2) probably_damaging(0.945) TCGA-VQ-A8P2-01 7 120767143 120767143 G T CPED1 Splice_Site p.X379_splice 0.30 TCGA-VQ-A8P2-01 7 121616844 121616844 G A PTPRZ1 Silent p.G186G 0.30 TCGA-VQ-A8P2-01 7 121616874 121616874 T C PTPRZ1 Silent p.I196I 0.40 TCGA-VQ-A8P2-01 7 121653642 121653642 G A PTPRZ1 Silent p.K1514K 0.22 TCGA-VQ-A8P2-01 7 121679608 121679608 G T PTPRZ1 Missense_Mutation p.R1868M 0.09 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 7 121699922 121699922 C T PTPRZ1 Missense_Mutation p.P2263S 0.35 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 7 121717913 121717913 C T AASS Missense_Mutation p.A881T 0.08 deleterious(0.04) benign(0.384) TCGA-VQ-A8P2-01 7 121717975 121717975 G A AASS Missense_Mutation p.A860V 0.41 tolerated(1) benign(0.002) TCGA-VQ-A8P2-01 7 122027158 122027158 G A CADPS2 Silent p.S1078S 0.44 TCGA-VQ-A8P2-01 7 12254541 12254541 C A TMEM106B Silent p.V35V 0.40 TCGA-VQ-A8P2-01 7 12258147 12258147 C T TMEM106B Missense_Mutation p.T94I 0.37 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 7 122635650 122635650 G T TAS2R16 Silent p.I13I 0.11 TCGA-VQ-A8P2-01 7 123182106 123182106 C T NDUFA5 3'UTR 0.31 TCGA-VQ-A8P2-01 7 123269153 123269153 C A ASB15 Missense_Mutation p.L369I 0.10 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 7 123332485 123332485 T - WASL Frame_Shift_Del p.V422Wfs*17 0.32 TCGA-VQ-A8P2-01 7 123346871 123346871 G A WASL Silent p.L88L 0.50 TCGA-VQ-A8P2-01 7 124404300 124404300 C T GPR37 Missense_Mutation p.R244H 0.12 deleterious(0.04) benign(0.01) TCGA-VQ-A8P2-01 7 126086230 126086230 C A GRM8 Missense_Mutation p.R876I 0.08 deleterious(0) probably_damaging(0.991) TCGA-VQ-A8P2-01 7 126173664 126173664 G A GRM8 Missense_Mutation p.A591V 0.09 deleterious(0) benign(0.285) TCGA-VQ-A8P2-01 7 126882895 126882895 C T GRM8 Missense_Mutation p.A122T 0.24 deleterious(0.01) probably_damaging(0.997) TCGA-VQ-A8P2-01 7 127013924 127013924 T C ZNF800 Missense_Mutation p.K489R 0.36 tolerated(0.12) probably_damaging(0.967) TCGA-VQ-A8P2-01 7 127013983 127013983 C A ZNF800 Missense_Mutation p.Q469H 0.36 tolerated(0.08) benign(0.078) TCGA-VQ-A8P2-01 7 127255073 127255073 C - PAX4 Frame_Shift_Del p.G66Efs*18 0.32 TCGA-VQ-A8P2-01 7 1273155 1273155 G A UNCX Splice_Site p.X92_splice 0.39 TCGA-VQ-A8P2-01 7 1275518 1275518 A G UNCX Silent p.K167K 0.13 TCGA-VQ-A8P2-01 7 127638054 127638054 C T SND1 Intron 0.11 TCGA-VQ-A8P2-01 7 128036990 128036990 C - IMPDH1 Frame_Shift_Del p.N388Tfs*3 0.36 TCGA-VQ-A8P2-01 7 128356950 128356950 G A FAM71F1 Silent p.L111L 0.39 TCGA-VQ-A8P2-01 7 128482429 128482429 G A FLNC Splice_Site p.X755_splice 0.47 TCGA-VQ-A8P2-01 7 128484133 128484133 G A FLNC Missense_Mutation p.R1002Q 0.47 tolerated(0.1) benign(0.426) TCGA-VQ-A8P2-01 7 128494106 128494106 C T FLNC Missense_Mutation p.T2188M 0.45 tolerated(0.07) benign(0.006) TCGA-VQ-A8P2-01 7 129066342 129066342 A G AHCYL2 Silent p.T589T 0.23 TCGA-VQ-A8P2-01 7 131191394 131191394 C T PODXL Missense_Mutation p.R398Q 0.39 tolerated(0.45) benign(0.223) TCGA-VQ-A8P2-01 7 131866334 131866334 C T PLXNA4 Missense_Mutation p.A1100T 0.17 tolerated(0.22) benign(0.36) TCGA-VQ-A8P2-01 7 133622742 133622742 C T EXOC4 Missense_Mutation p.A709V 0.33 tolerated(0.26) possibly_damaging(0.831) TCGA-VQ-A8P2-01 7 133943141 133943141 C T LRGUK Silent p.T777T 0.45 TCGA-VQ-A8P2-01 7 134222347 134222347 C T AKR1B10 Silent p.D225D 0.42 TCGA-VQ-A8P2-01 7 134260263 134260263 C A AKR1B15 Missense_Mutation p.P202H 0.15 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 7 134878051 134878051 C T WDR91 Missense_Mutation p.G531S 0.57 tolerated(0.22) benign(0.046) TCGA-VQ-A8P2-01 7 135073647 135073647 C T CNOT4 Intron 0.62 TCGA-VQ-A8P2-01 7 135078916 135078916 T C CNOT4 Missense_Mutation p.N461D 0.46 tolerated(0.53) benign(0.156) TCGA-VQ-A8P2-01 7 135286256 135286256 G A NUP205 Splice_Site p.X838_splice 0.10 TCGA-VQ-A8P2-01 7 135419014 135419014 G A FAM180A Silent p.D77D 0.48 TCGA-VQ-A8P2-01 7 136938288 136938288 C T PTN Missense_Mutation p.R71Q 0.44 deleterious_low_confidence(0.03) benign(0.235) TCGA-VQ-A8P2-01 7 137776610 137776610 G A AKR1D1 Missense_Mutation p.E120K 0.38 deleterious(0.02) probably_damaging(0.976) TCGA-VQ-A8P2-01 7 138333799 138333799 G A SVOPL Silent p.R206R 0.46 TCGA-VQ-A8P2-01 7 138434048 138434048 G T ATP6V0A4 Silent p.S348S 0.08 TCGA-VQ-A8P2-01 7 138593790 138593790 C A KIAA1549 Missense_Mutation p.A1075S 0.12 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 7 138740021 138740021 G A ZC3HAV1 Missense_Mutation p.S706L 0.11 tolerated(0.33) possibly_damaging(0.885) TCGA-VQ-A8P2-01 7 139026220 139026220 C T LUC7L2 Silent p.R30R 0.35 TCGA-VQ-A8P2-01 7 139102462 139102462 C T LUC7L2 Nonsense_Mutation p.R396* 0.12 TCGA-VQ-A8P2-01 7 139228976 139228976 G A CLEC2L Splice_Site p.X178_splice 0.50 TCGA-VQ-A8P2-01 7 139268717 139268717 G A HIPK2 Silent p.S937S 0.30 TCGA-VQ-A8P2-01 7 139754527 139754527 G A PARP12 Missense_Mutation p.T266I 0.49 deleterious(0.05) benign(0.104) TCGA-VQ-A8P2-01 7 139796362 139796362 C A KDM7A Silent p.V789V 0.20 TCGA-VQ-A8P2-01 7 139796787 139796787 T G KDM7A Missense_Mutation p.T693P 0.39 tolerated(0.24) benign(0.265) TCGA-VQ-A8P2-01 7 141255267 141255267 A G AGK Translation_Start_Site p.M1? 0.32 tolerated_low_confidence(0.07) probably_damaging(0.952) TCGA-VQ-A8P2-01 7 141364719 141364719 C T KIAA1147 Missense_Mutation p.R363Q 0.31 tolerated(0.31) benign(0.151) TCGA-VQ-A8P2-01 7 141430139 141430139 G A WEE2 3'UTR 0.49 TCGA-VQ-A8P2-01 7 141490637 141490637 G A TAS2R5 Missense_Mutation p.R159Q 0.38 tolerated(0.6) benign(0.441) TCGA-VQ-A8P2-01 7 141618842 141618842 C T OR9A4 Missense_Mutation p.S56F 0.42 deleterious(0) probably_damaging(0.966) TCGA-VQ-A8P2-01 7 141619359 141619359 C A OR9A4 Silent p.I228I 0.36 TCGA-VQ-A8P2-01 7 141719019 141719019 C T MGAM Silent p.G116G 0.43 TCGA-VQ-A8P2-01 7 141755405 141755405 G A MGAM Missense_Mutation p.R1121H 0.26 deleterious(0) probably_damaging(0.979) TCGA-VQ-A8P2-01 7 141763330 141763330 G A MGAM Missense_Mutation p.G1430E 0.18 deleterious(0) probably_damaging(0.991) TCGA-VQ-A8P2-01 7 141794662 141794662 G T MGAM Missense_Mutation p.R1590M 0.63 tolerated(0.06) benign(0.057) TCGA-VQ-A8P2-01 7 142001029 142001029 C T TRBV2 Missense_Mutation p.H8Y 0.19 TCGA-VQ-A8P2-01 7 142131902 142131902 C T TRBV5-6 5'UTR 0.42 TCGA-VQ-A8P2-01 7 142176390 142176390 G T TRBV7-4 Missense_Mutation p.L96M 0.31 tolerated(0.05) possibly_damaging(0.693) TCGA-VQ-A8P2-01 7 142239792 142239792 G A TRBV9 Silent p.L30L 0.36 TCGA-VQ-A8P2-01 7 142326870 142326870 G T TRBV19 Missense_Mutation p.Q56H 0.38 deleterious(0.01) probably_damaging(0.971) TCGA-VQ-A8P2-01 7 142428796 142428796 C A TRBV28 Missense_Mutation p.F52L 0.46 deleterious(0.01) benign(0.037) TCGA-VQ-A8P2-01 7 142565999 142565999 T C EPHB6 Missense_Mutation p.L640P 0.10 tolerated(0.44) possibly_damaging(0.794) TCGA-VQ-A8P2-01 7 143055983 143055983 G A FAM131B Missense_Mutation p.R135C 0.47 deleterious(0) probably_damaging(0.949) TCGA-VQ-A8P2-01 7 143510078 143510078 G A RP11-61L23.2 RNA 0.21 TCGA-VQ-A8P2-01 7 143657270 143657270 C T OR2F1 Silent p.V69V 0.37 TCGA-VQ-A8P2-01 7 143826594 143826594 G A OR2A14 Missense_Mutation p.R130H 0.46 tolerated(0.95) benign(0.003) TCGA-VQ-A8P2-01 7 143929609 143929609 C T OR2A42 Missense_Mutation p.E110K 0.36 deleterious(0.01) possibly_damaging(0.648) TCGA-VQ-A8P2-01 7 144098459 144098459 C T NOBOX Missense_Mutation p.R175H 0.27 deleterious(0.02) possibly_damaging(0.673) TCGA-VQ-A8P2-01 7 144099043 144099043 G A NOBOX Missense_Mutation p.P71S 0.31 tolerated_low_confidence(0.13) benign(0.006) TCGA-VQ-A8P2-01 7 147259297 147259297 T C CNTNAP2 Silent p.D615D 0.41 TCGA-VQ-A8P2-01 7 148288104 148288104 C A C7orf33 Silent p.P29P 0.46 TCGA-VQ-A8P2-01 7 148288205 148288205 C T C7orf33 Missense_Mutation p.A63V 0.32 deleterious_low_confidence(0) benign(0.005) TCGA-VQ-A8P2-01 7 148701266 148701266 G A PDIA4 Missense_Mutation p.P520S 0.41 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 7 148768061 148768061 G A ZNF786 Silent p.S601S 0.54 TCGA-VQ-A8P2-01 7 148768561 148768561 C T ZNF786 Missense_Mutation p.A435T 0.13 tolerated(1) benign(0.019) TCGA-VQ-A8P2-01 7 148801104 148801104 C T ZNF425 Missense_Mutation p.R620H 0.38 deleterious(0.02) possibly_damaging(0.708) TCGA-VQ-A8P2-01 7 148801648 148801648 T C ZNF425 Missense_Mutation p.K439E 0.49 tolerated(1) benign(0.028) TCGA-VQ-A8P2-01 7 148802126 148802126 G A ZNF425 Silent p.C279C 0.11 TCGA-VQ-A8P2-01 7 148978786 148978786 G A ZNF783 Silent p.P331P 0.33 TCGA-VQ-A8P2-01 7 149426290 149426290 G A KRBA1 Missense_Mutation p.E547K 0.43 deleterious(0) probably_damaging(0.953) TCGA-VQ-A8P2-01 7 149462736 149462736 C T ZNF467 Silent p.T285T 0.17 TCGA-VQ-A8P2-01 7 149482621 149482621 C T SSPO RNA 0.56 TCGA-VQ-A8P2-01 7 149489254 149489254 C T SSPO RNA 0.44 TCGA-VQ-A8P2-01 7 149508058 149508059 - C SSPO RNA 0.29 TCGA-VQ-A8P2-01 7 149515106 149515106 C T SSPO RNA 0.48 TCGA-VQ-A8P2-01 7 149544992 149544992 G A ZNF862 Missense_Mutation p.R137Q 0.50 tolerated_low_confidence(0.07) possibly_damaging(0.787) TCGA-VQ-A8P2-01 7 149576647 149576647 C A ATP6V0E2 Missense_Mutation p.Q175K 0.38 deleterious_low_confidence(0) benign(0.042) TCGA-VQ-A8P2-01 7 150490188 150490188 C T TMEM176B Missense_Mutation p.M196I 0.32 deleterious(0.01) possibly_damaging(0.464) TCGA-VQ-A8P2-01 7 150501465 150501465 C A TMEM176A Missense_Mutation p.L191I 0.35 tolerated(0.34) benign(0.158) TCGA-VQ-A8P2-01 7 150554720 150554720 G A AOC1 Missense_Mutation p.G388S 0.45 deleterious(0) probably_damaging(0.992) TCGA-VQ-A8P2-01 7 150648846 150648846 G A KCNH2 Silent p.Y545Y 0.54 TCGA-VQ-A8P2-01 7 150714248 150714248 C A ATG9B Missense_Mutation p.G722W 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-VQ-A8P2-01 7 150741222 150741222 C T ABCB8 Missense_Mutation p.R644C 0.28 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 7 150815639 150815639 G A AGAP3 Missense_Mutation p.G297R 0.54 deleterious(0.02) possibly_damaging(0.593) TCGA-VQ-A8P2-01 7 150883993 150883993 C T ASB10 Silent p.A75A 0.37 TCGA-VQ-A8P2-01 7 150913091 150913091 G A ABCF2 Nonsense_Mutation p.R455* 0.40 TCGA-VQ-A8P2-01 7 150935108 150935108 C T CHPF2 Nonsense_Mutation p.R554* 0.40 TCGA-VQ-A8P2-01 7 150935685 150935685 G A CHPF2 Missense_Mutation p.R746H 0.47 tolerated(0.43) benign(0.092) TCGA-VQ-A8P2-01 7 151065934 151065934 C T NUB1 Silent p.N427N 0.37 TCGA-VQ-A8P2-01 7 151797926 151797926 C T GALNT11 Silent p.G113G 0.36 TCGA-VQ-A8P2-01 7 151836341 151836341 G A KMT2C Missense_Mutation p.R4822C 0.18 probably_damaging(1) TCGA-VQ-A8P2-01 7 152027701 152027701 A G KMT2C Missense_Mutation p.V125A 0.46 benign(0.405) TCGA-VQ-A8P2-01 7 152511720 152511720 T A ACTR3B Missense_Mutation p.I141N 0.35 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 7 1527082 1527082 C - INTS1 Frame_Shift_Del p.R843Gfs*11 0.33 TCGA-VQ-A8P2-01 7 1536891 1536891 C T INTS1 Silent p.S495S 0.34 TCGA-VQ-A8P2-01 7 15405839 15405839 C T AGMO Silent p.S361S 0.19 TCGA-VQ-A8P2-01 7 154774988 154774988 C A PAXIP1 Missense_Mutation p.D127Y 0.26 deleterious(0.02) probably_damaging(0.926) TCGA-VQ-A8P2-01 7 154875950 154875950 G A HTR5A Missense_Mutation p.R276Q 0.57 deleterious(0.05) benign(0.393) TCGA-VQ-A8P2-01 7 154875967 154875967 C T HTR5A Missense_Mutation p.R282W 0.29 deleterious(0) probably_damaging(0.958) TCGA-VQ-A8P2-01 7 156447323 156447323 T C RNF32 Missense_Mutation p.W110R 0.42 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 7 156469301 156469301 C A RNF32 Silent p.A347A 0.42 TCGA-VQ-A8P2-01 7 156476804 156476804 G A LMBR1 Missense_Mutation p.P481S 0.34 tolerated_low_confidence(0.65) benign(0.094) TCGA-VQ-A8P2-01 7 156974879 156974879 C T UBE3C Missense_Mutation p.P283L 0.26 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 7 157046953 157046953 G A UBE3C Missense_Mutation p.A967T 0.29 deleterious(0.05) benign(0.259) TCGA-VQ-A8P2-01 7 157931051 157931051 G A PTPRN2 Missense_Mutation p.A356V 0.25 tolerated(0.24) benign(0.006) TCGA-VQ-A8P2-01 7 158447904 158447904 C T NCAPG2 Missense_Mutation p.G851D 0.36 tolerated(0.12) probably_damaging(0.965) TCGA-VQ-A8P2-01 7 16415850 16415850 C T ISPD Missense_Mutation p.R184Q 0.23 deleterious(0) probably_damaging(0.955) TCGA-VQ-A8P2-01 7 16640412 16640412 C T ANKMY2 Missense_Mutation p.A434T 0.38 tolerated_low_confidence(0.21) benign(0.001) TCGA-VQ-A8P2-01 7 16705077 16705077 G A BZW2 Silent p.K3K 0.31 TCGA-VQ-A8P2-01 7 17379034 17379034 G T AHR Missense_Mutation p.G529W 0.36 deleterious(0) probably_damaging(0.975) TCGA-VQ-A8P2-01 7 17873692 17873692 G A SNX13 Missense_Mutation p.S527F 0.30 deleterious(0) probably_damaging(0.947) TCGA-VQ-A8P2-01 7 18767281 18767281 G T HDAC9 Nonsense_Mutation p.E604* 0.36 TCGA-VQ-A8P2-01 7 18767291 18767291 G A HDAC9 Missense_Mutation p.R607H 0.36 deleterious(0.02) benign(0.006) TCGA-VQ-A8P2-01 7 18975515 18975515 G T HDAC9 Missense_Mutation p.A963S 0.35 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8P2-01 7 19015514 19015514 C T HDAC9 Silent p.T1036T 0.20 TCGA-VQ-A8P2-01 7 20180651 20180651 C T MACC1 Missense_Mutation p.R826K 0.37 tolerated(0.48) probably_damaging(0.99) TCGA-VQ-A8P2-01 7 20199352 20199352 T C MACC1 Missense_Mutation p.E211G 0.40 tolerated(0.07) benign(0.017) TCGA-VQ-A8P2-01 7 20434518 20434518 G T ITGB8 Splice_Site p.X353_splice 0.11 TCGA-VQ-A8P2-01 7 20793015 20793015 A G ABCB5 Silent p.A1154A 0.36 TCGA-VQ-A8P2-01 7 20824258 20824258 G A SP8 Missense_Mutation p.A393V 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-VQ-A8P2-01 7 21469490 21469490 G A SP4 Missense_Mutation p.G236D 0.19 deleterious(0) probably_damaging(0.992) TCGA-VQ-A8P2-01 7 21658800 21658800 G T DNAH11 Missense_Mutation p.R1451M 0.37 benign(0.382) TCGA-VQ-A8P2-01 7 21727020 21727020 G T DNAH11 Missense_Mutation p.K1940N 0.43 probably_damaging(0.989) TCGA-VQ-A8P2-01 7 21781604 21781604 T C DNAH11 Silent p.Y2665Y 0.46 TCGA-VQ-A8P2-01 7 21939669 21939669 A - DNAH11 Frame_Shift_Del p.T4421Qfs*72 0.20 TCGA-VQ-A8P2-01 7 21940815 21940815 C T DNAH11 Silent p.S4505S 0.34 TCGA-VQ-A8P2-01 7 21947917 21947917 C T CDCA7L Missense_Mutation p.R171H 0.30 tolerated(0.58) benign(0.001) TCGA-VQ-A8P2-01 7 2302885 2302885 C T SNX8 Missense_Mutation p.A299T 0.11 deleterious(0.01) possibly_damaging(0.803) TCGA-VQ-A8P2-01 7 2302893 2302893 G A SNX8 Missense_Mutation p.A296V 0.09 deleterious(0.04) benign(0.187) TCGA-VQ-A8P2-01 7 2314825 2314825 C T SNX8 Missense_Mutation p.V114M 0.09 deleterious(0.02) probably_damaging(0.987) TCGA-VQ-A8P2-01 7 23205390 23205390 T C KLHL7 Missense_Mutation p.V337A 0.52 tolerated(0.05) possibly_damaging(0.876) TCGA-VQ-A8P2-01 7 23205476 23205476 C T KLHL7 Silent p.L366L 0.14 TCGA-VQ-A8P2-01 7 23235463 23235463 A G NUPL2 Missense_Mutation p.T151A 0.33 tolerated(0.16) benign(0.05) TCGA-VQ-A8P2-01 7 23358858 23358858 T C IGF2BP3 Missense_Mutation p.T407A 0.44 deleterious(0.04) possibly_damaging(0.687) TCGA-VQ-A8P2-01 7 23508118 23508118 C T IGF2BP3 Silent p.S73S 0.36 TCGA-VQ-A8P2-01 7 23545392 23545392 G A TRA2A Nonsense_Mutation p.R271* 0.34 TCGA-VQ-A8P2-01 7 23793960 23793961 - A STK31 Frame_Shift_Ins p.D389Rfs*11 0.30 TCGA-VQ-A8P2-01 7 23808650 23808650 G A STK31 Missense_Mutation p.A485T 0.08 tolerated(0.35) benign(0.014) TCGA-VQ-A8P2-01 7 2415079 2415079 G A EIF3B Missense_Mutation p.A649T 0.29 tolerated(0.34) benign(0.258) TCGA-VQ-A8P2-01 7 24690173 24690173 C T MPP6 Nonsense_Mutation p.R165* 0.38 TCGA-VQ-A8P2-01 7 2473008 2473008 G A CHST12 Missense_Mutation p.R245H 0.22 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 7 24738626 24738626 T G DFNA5 3'UTR 0.58 TCGA-VQ-A8P2-01 7 24839831 24839831 A G OSBPL3 Missense_Mutation p.S879P 0.31 deleterious(0.02) benign(0.01) TCGA-VQ-A8P2-01 7 25194732 25194732 A G C7orf31 Missense_Mutation p.S165P 0.49 tolerated(0.09) probably_damaging(0.914) TCGA-VQ-A8P2-01 7 25208044 25208044 G A C7orf31 Missense_Mutation p.P59S 0.35 deleterious(0.03) benign(0.046) TCGA-VQ-A8P2-01 7 2564931 2564931 G A LFNG Missense_Mutation p.R187H 0.20 tolerated(0.49) benign(0.013) TCGA-VQ-A8P2-01 7 26224798 26224798 G A NFE2L3 Missense_Mutation p.V494I 0.36 tolerated(0.55) benign(0.004) TCGA-VQ-A8P2-01 7 26242599 26242599 C A CBX3 5'UTR 0.19 TCGA-VQ-A8P2-01 7 2698052 2698052 C T TTYH3 Silent p.A461A 0.42 TCGA-VQ-A8P2-01 7 27140828 27140828 G A HOXA2 Silent p.S216S 0.32 TCGA-VQ-A8P2-01 7 27169104 27169104 G T HOXA4 Missense_Mutation p.H235N 0.22 deleterious(0) probably_damaging(0.994) TCGA-VQ-A8P2-01 7 27185363 27185363 G A HOXA6 Missense_Mutation p.R206C 0.42 deleterious(0) probably_damaging(0.993) TCGA-VQ-A8P2-01 7 27284874 27284874 G A EVX1 Missense_Mutation p.R212Q 0.46 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 7 27284889 27284889 C T EVX1 Missense_Mutation p.A217V 0.22 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8P2-01 7 27880395 27880395 G A JAZF1 Silent p.I159I 0.11 TCGA-VQ-A8P2-01 7 28858814 28858814 C T CREB5 Missense_Mutation p.S482F 0.35 deleterious(0) unknown(0) TCGA-VQ-A8P2-01 7 29135806 29135806 G T CPVL Missense_Mutation p.L106I 0.10 deleterious(0.03) probably_damaging(0.999) TCGA-VQ-A8P2-01 7 2962827 2962827 G A CARD11 Missense_Mutation p.S694L 0.08 tolerated(0.36) benign(0.058) TCGA-VQ-A8P2-01 7 29727117 29727118 - A DPY19L2P3 Intron 0.31 TCGA-VQ-A8P2-01 7 2983911 2983911 G A CARD11 Missense_Mutation p.R207C 0.17 deleterious(0.01) possibly_damaging(0.901) TCGA-VQ-A8P2-01 7 29966214 29966214 C T SCRN1 Missense_Mutation p.V334I 0.38 tolerated(0.33) benign(0.131) TCGA-VQ-A8P2-01 7 30491184 30491184 G A NOD1 Missense_Mutation p.R617C 0.31 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 7 30492468 30492468 C T NOD1 Missense_Mutation p.G189S 0.40 tolerated(0.06) possibly_damaging(0.83) TCGA-VQ-A8P2-01 7 31682738 31682738 G A CCDC129 Missense_Mutation p.G611E 0.48 tolerated(0.45) probably_damaging(0.921) TCGA-VQ-A8P2-01 7 31735141 31735141 A - PPP1R17 Frame_Shift_Del p.N49Mfs*6 0.31 TCGA-VQ-A8P2-01 7 31912975 31912975 C T PDE1C Missense_Mutation p.S240N 0.44 deleterious(0) possibly_damaging(0.484) TCGA-VQ-A8P2-01 7 32109917 32109917 C T PDE1C Intron 0.12 TCGA-VQ-A8P2-01 7 32910446 32910447 - T KBTBD2 Frame_Shift_Ins p.I128Nfs*14 0.45 TCGA-VQ-A8P2-01 7 34889193 34889193 G T NPSR1 Intron 0.31 TCGA-VQ-A8P2-01 7 34978907 34978907 A G DPY19L1 Missense_Mutation p.Y576H 0.46 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 7 36373770 36373770 C T KIAA0895 Missense_Mutation p.G334D 0.33 deleterious(0.01) probably_damaging(0.997) TCGA-VQ-A8P2-01 7 36459786 36459786 G T ANLN Silent p.V626V 0.42 TCGA-VQ-A8P2-01 7 3678717 3678717 A G SDK1 Silent p.Q180Q 0.36 TCGA-VQ-A8P2-01 7 37136224 37136224 G A ELMO1 Missense_Mutation p.P434S 0.40 tolerated(0.21) possibly_damaging(0.698) TCGA-VQ-A8P2-01 7 37949243 37949243 T G SFRP4 Missense_Mutation p.R277S 0.11 tolerated(0.07) benign(0.012) TCGA-VQ-A8P2-01 7 37956144 37956144 C A SFRP4 5'UTR 0.31 TCGA-VQ-A8P2-01 7 38313227 38313227 T - TRGJP Frame_Shift_Del p.I8Sfs*? 0.32 TCGA-VQ-A8P2-01 7 38356912 38356912 T C TRGV9 Silent p.L24L 0.32 TCGA-VQ-A8P2-01 7 38798017 38798017 G A VPS41 Missense_Mutation p.A496V 0.33 deleterious(0.05) benign(0.014) TCGA-VQ-A8P2-01 7 39991409 39991409 G A CDK13 Missense_Mutation p.S390N 0.27 tolerated(0.33) unknown(0) TCGA-VQ-A8P2-01 7 4185419 4185419 G A SDK1 Missense_Mutation p.A1432T 0.16 deleterious(0.02) benign(0.165) TCGA-VQ-A8P2-01 7 42003927 42003927 C T GLI3 3'UTR 0.55 TCGA-VQ-A8P2-01 7 42005382 42005382 C A GLI3 Missense_Mutation p.V1097L 0.15 tolerated(0.08) probably_damaging(0.983) TCGA-VQ-A8P2-01 7 42005870 42005870 G A GLI3 Missense_Mutation p.A934V 0.33 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 7 42088245 42088245 C T GLI3 Missense_Mutation p.R175K 0.35 deleterious(0.01) probably_damaging(0.986) TCGA-VQ-A8P2-01 7 42950408 42950408 C T C7orf25 Missense_Mutation p.G89D 0.40 tolerated(0.17) benign(0.242) TCGA-VQ-A8P2-01 7 43484040 43484040 G A HECW1 Silent p.T423T 0.56 TCGA-VQ-A8P2-01 7 43917474 43917474 G A URGCP Missense_Mutation p.R530W 0.43 deleterious(0.01) possibly_damaging(0.599) TCGA-VQ-A8P2-01 7 43917686 43917686 C T URGCP Missense_Mutation p.G459D 0.11 deleterious(0.03) probably_damaging(1) TCGA-VQ-A8P2-01 7 43918000 43918000 G A URGCP Silent p.I354I 0.39 TCGA-VQ-A8P2-01 7 43918150 43918150 G T URGCP Silent p.A304A 0.40 TCGA-VQ-A8P2-01 7 44046789 44046789 T C SPDYE1 Intron 0.38 TCGA-VQ-A8P2-01 7 44113485 44113485 C - POLM Frame_Shift_Del p.G404Dfs*12 0.32 TCGA-VQ-A8P2-01 7 44120414 44120414 G - POLM Frame_Shift_Del p.P97Qfs*6 0.31 TCGA-VQ-A8P2-01 7 44147231 44147231 C T AEBP1 Missense_Mutation p.P224L 0.16 tolerated_low_confidence(0.73) benign(0.004) TCGA-VQ-A8P2-01 7 44155380 44155380 C T POLD2 Missense_Mutation p.A378T 0.45 deleterious(0.03) possibly_damaging(0.835) TCGA-VQ-A8P2-01 7 44179993 44179993 G A MYL7 Missense_Mutation p.A76V 0.15 tolerated(0.07) benign(0.001) TCGA-VQ-A8P2-01 7 44228590 44228590 G A GCK 5'UTR 0.20 TCGA-VQ-A8P2-01 7 44247745 44247745 C T YKT6 Missense_Mutation p.A136V 0.39 deleterious(0.04) benign(0.19) TCGA-VQ-A8P2-01 7 44268484 44268484 C T CAMK2B Missense_Mutation p.G460D 0.53 tolerated_low_confidence(0.07) probably_damaging(0.931) TCGA-VQ-A8P2-01 7 44524842 44524842 C A NUDCD3 Missense_Mutation p.E78D 0.10 deleterious(0.01) probably_damaging(0.918) TCGA-VQ-A8P2-01 7 44578494 44578494 A G NPC1L1 Missense_Mutation p.L501P 0.34 deleterious(0) possibly_damaging(0.863) TCGA-VQ-A8P2-01 7 44578546 44578546 C T NPC1L1 Missense_Mutation p.D484N 0.52 tolerated(0.41) probably_damaging(0.995) TCGA-VQ-A8P2-01 7 44613203 44613203 C A DDX56 Missense_Mutation p.Q67H 0.36 deleterious(0.05) possibly_damaging(0.861) TCGA-VQ-A8P2-01 7 44613472 44613472 C A DDX56 Missense_Mutation p.G8V 0.48 tolerated(0.18) benign(0.028) TCGA-VQ-A8P2-01 7 44733484 44733484 C A OGDH Silent p.R466R 0.21 TCGA-VQ-A8P2-01 7 44736592 44736592 G A OGDH Silent p.A660A 0.11 TCGA-VQ-A8P2-01 7 44737841 44737841 C T OGDH Silent p.N803N 0.20 TCGA-VQ-A8P2-01 7 44805815 44805815 G A ZMIZ2 Silent p.T765T 0.31 TCGA-VQ-A8P2-01 7 45067388 45067388 G T CCM2 Nonsense_Mutation p.E29* 0.40 TCGA-VQ-A8P2-01 7 45725798 45725798 G A ADCY1 Missense_Mutation p.G771R 0.20 tolerated(0.16) benign(0.082) TCGA-VQ-A8P2-01 7 47408641 47408641 C A TNS3 Missense_Mutation p.Q534H 0.42 tolerated(1) benign(0) TCGA-VQ-A8P2-01 7 48048663 48048663 G A SUN3 Missense_Mutation p.R100C 0.42 deleterious(0) possibly_damaging(0.77) TCGA-VQ-A8P2-01 7 4826033 4826033 A C AP5Z1 Silent p.R429R 0.08 TCGA-VQ-A8P2-01 7 48319141 48319141 G A ABCA13 Missense_Mutation p.G2784R 0.48 benign(0.014) TCGA-VQ-A8P2-01 7 48319427 48319427 G A ABCA13 Missense_Mutation p.S2879N 0.50 benign(0.004) TCGA-VQ-A8P2-01 7 4917611 4917611 C T RADIL Missense_Mutation p.E54K 0.16 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 7 50367306 50367306 C T IKZF1 Missense_Mutation p.S38F 0.27 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 7 50514938 50514938 C A FIGNL1 Missense_Mutation p.K16N 0.47 deleterious(0) possibly_damaging(0.717) TCGA-VQ-A8P2-01 7 50660772 50660772 G T GRB10 Missense_Mutation p.F554L 0.48 deleterious(0.02) benign(0.277) TCGA-VQ-A8P2-01 7 50660793 50660793 G A GRB10 Silent p.C547C 0.38 TCGA-VQ-A8P2-01 7 50771529 50771529 G A GRB10 Missense_Mutation p.A43V 0.39 tolerated_low_confidence(0.28) benign(0.001) TCGA-VQ-A8P2-01 7 51096056 51096056 C T COBL Missense_Mutation p.D913N 0.38 tolerated(0.63) benign(0.004) TCGA-VQ-A8P2-01 7 5112735 5112735 C T RBAK-RBAKDN 3'UTR 0.36 TCGA-VQ-A8P2-01 7 5254167 5254167 C T WIPI2 Silent p.T71T 0.36 TCGA-VQ-A8P2-01 7 5256261 5256261 C T WIPI2 Missense_Mutation p.T150M 0.47 deleterious(0) possibly_damaging(0.573) TCGA-VQ-A8P2-01 7 53103952 53103952 G A POM121L12 Silent p.L196L 0.16 TCGA-VQ-A8P2-01 7 5348870 5348870 G A TNRC18 Missense_Mutation p.R2840C 0.18 unknown(0) TCGA-VQ-A8P2-01 7 5410958 5410958 C T TNRC18 Silent p.P1089P 0.41 TCGA-VQ-A8P2-01 7 55240687 55240687 C T EGFR Missense_Mutation p.P644L 0.36 tolerated(0.07) probably_damaging(0.942) TCGA-VQ-A8P2-01 7 55468927 55468927 C T LANCL2 Missense_Mutation p.R247C 0.39 deleterious(0) probably_damaging(0.99) TCGA-VQ-A8P2-01 7 5567982 5567982 G A ACTB Silent p.D244D 0.41 TCGA-VQ-A8P2-01 7 55874870 55874871 - T SEPT14 Frame_Shift_Ins p.T300Nfs*7 0.26 TCGA-VQ-A8P2-01 7 56128167 56128167 G A CCT6A Intron 0.38 TCGA-VQ-A8P2-01 7 56171941 56171941 G A CHCHD2 Missense_Mutation p.A93V 0.36 tolerated(0.12) benign(0.195) TCGA-VQ-A8P2-01 7 5662739 5662739 G T RNF216 Missense_Mutation p.P842T 0.31 deleterious(0) benign(0.22) TCGA-VQ-A8P2-01 7 57188093 57188093 A G ZNF479 Silent p.H343H 0.30 TCGA-VQ-A8P2-01 7 5940149 5940149 G T CCZ1 Missense_Mutation p.K88N 0.22 deleterious(0) probably_damaging(0.925) TCGA-VQ-A8P2-01 7 5977505 5977505 G T RSPH10B Missense_Mutation p.L632I 0.85 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A8P2-01 7 5998643 5998643 T G RSPH10B Missense_Mutation p.K214Q 0.39 tolerated(0.08) benign(0.196) TCGA-VQ-A8P2-01 7 6006528 6006528 C T RSPH10B Missense_Mutation p.E74K 0.20 deleterious(0) probably_damaging(0.969) TCGA-VQ-A8P2-01 7 6017321 6017321 C T PMS2 Silent p.Q781Q 0.14 TCGA-VQ-A8P2-01 7 6063067 6063067 G A AIMP2 Nonsense_Mutation p.W236* 0.33 TCGA-VQ-A8P2-01 7 63538417 63538417 T C ZNF727 Silent p.H330H 0.50 TCGA-VQ-A8P2-01 7 63809071 63809071 G A ZNF736 Missense_Mutation p.R277K 0.64 tolerated(0.39) benign(0.057) TCGA-VQ-A8P2-01 7 64168537 64168537 C T ZNF107 Nonsense_Mutation p.R619* 0.42 TCGA-VQ-A8P2-01 7 64389200 64389200 C T ZNF273 Silent p.S498S 0.14 TCGA-VQ-A8P2-01 7 64438973 64438973 T - ZNF117 Frame_Shift_Del p.I326Ffs*28 0.22 TCGA-VQ-A8P2-01 7 64442464 64442464 C A ZNF117 5'UTR 0.20 TCGA-VQ-A8P2-01 7 64639786 64639786 C T INTS4L1 RNA 0.24 TCGA-VQ-A8P2-01 7 65429308 65429308 A G GUSB Splice_Site p.X597_splice 0.42 TCGA-VQ-A8P2-01 7 65441044 65441044 C T GUSB Silent p.P290P 0.33 TCGA-VQ-A8P2-01 7 65706170 65706170 T A TPST1 Missense_Mutation p.L253H 0.12 deleterious(0) probably_damaging(0.95) TCGA-VQ-A8P2-01 7 6641770 6641770 A G C7orf26 Missense_Mutation p.N383D 0.44 tolerated(0.15) possibly_damaging(0.486) TCGA-VQ-A8P2-01 7 66483089 66483089 G A TYW1 Missense_Mutation p.G274R 0.11 tolerated(0.24) benign(0.002) TCGA-VQ-A8P2-01 7 6803581 6803581 C T RSPH10B2 Missense_Mutation p.P141L 0.15 tolerated(0.18) probably_damaging(0.985) TCGA-VQ-A8P2-01 7 6864282 6864282 T C CCZ1B Silent p.V69V 0.17 TCGA-VQ-A8P2-01 7 70886091 70886091 G T WBSCR17 Missense_Mutation p.R321M 0.44 deleterious(0) possibly_damaging(0.905) TCGA-VQ-A8P2-01 7 71571261 71571261 C T CALN1 Missense_Mutation p.R88Q 0.44 tolerated(0.17) benign(0.322) TCGA-VQ-A8P2-01 7 72361262 72361262 T C POM121 5'UTR 0.35 TCGA-VQ-A8P2-01 7 72419418 72419418 G A POM121 3'UTR 0.58 TCGA-VQ-A8P2-01 7 72683339 72683339 C T GTF2IRD2P1 RNA 0.37 TCGA-VQ-A8P2-01 7 72849456 72849456 C A FZD9 Silent p.I373I 0.52 TCGA-VQ-A8P2-01 7 72856617 72856617 C T BAZ1B Missense_Mutation p.R1454H 0.46 tolerated_low_confidence(0.17) benign(0.007) TCGA-VQ-A8P2-01 7 72892280 72892280 C T BAZ1B Missense_Mutation p.R504H 0.36 deleterious(0.02) possibly_damaging(0.814) TCGA-VQ-A8P2-01 7 72925163 72925163 C T BAZ1B Missense_Mutation p.E43K 0.49 tolerated(0.4) benign(0.257) TCGA-VQ-A8P2-01 7 72954300 72954300 C T BCL7B Silent p.Q116Q 0.13 TCGA-VQ-A8P2-01 7 72988761 72988761 C T TBL2 Silent p.K71K 0.40 TCGA-VQ-A8P2-01 7 73097566 73097566 G A DNAJC30 Missense_Mutation p.A63V 0.44 deleterious(0.03) probably_damaging(0.999) TCGA-VQ-A8P2-01 7 73279928 73279928 G A WBSCR28 Missense_Mutation p.V175I 0.08 deleterious(0.02) possibly_damaging(0.621) TCGA-VQ-A8P2-01 7 73634106 73634106 G A LAT2 Missense_Mutation p.R56Q 0.46 tolerated(0.21) benign(0.013) TCGA-VQ-A8P2-01 7 73649859 73649859 G A RFC2 Intron 0.39 TCGA-VQ-A8P2-01 7 73753288 73753288 C A CLIP2 Missense_Mutation p.S211Y 0.30 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 7 73790479 73790479 C T CLIP2 Missense_Mutation p.A583V 0.56 tolerated(0.06) benign(0.022) TCGA-VQ-A8P2-01 7 73929891 73929891 G A GTF2IRD1 Missense_Mutation p.R161Q 0.31 tolerated(0.06) benign(0.019) TCGA-VQ-A8P2-01 7 74211498 74211498 G A GTF2IRD2 Missense_Mutation p.R785W 0.49 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 7 74564014 74564014 G A GTF2IRD2B Silent p.T587T 0.34 TCGA-VQ-A8P2-01 7 74564635 74564635 G A GTF2IRD2B Nonsense_Mutation p.W794* 0.15 TCGA-VQ-A8P2-01 7 7480441 7480441 G T COL28A1 Missense_Mutation p.P568T 0.08 tolerated(0.36) benign(0.24) TCGA-VQ-A8P2-01 7 75051084 75051084 G A POM121C Silent p.T817T 0.34 TCGA-VQ-A8P2-01 7 75694214 75694214 C A MDH2 Silent p.S276S 0.32 TCGA-VQ-A8P2-01 7 75896630 75896630 C T SRRM3 Silent p.S295S 0.29 TCGA-VQ-A8P2-01 7 76069813 76069813 G A ZP3 Silent p.S315S 0.15 TCGA-VQ-A8P2-01 7 76254975 76254975 G A POMZP3 Silent p.L31L 0.06 TCGA-VQ-A8P2-01 7 78150952 78150952 G A MAGI2 Silent p.Y183Y 0.45 TCGA-VQ-A8P2-01 7 794337 794337 C T HEATR2 Missense_Mutation p.S379L 0.38 deleterious(0) benign(0.014) TCGA-VQ-A8P2-01 7 79840350 79840350 C T GNAI1 Missense_Mutation p.T219M 0.39 deleterious(0.01) probably_damaging(0.992) TCGA-VQ-A8P2-01 7 80088140 80088140 C T GNAT3 Silent p.K304K 0.38 TCGA-VQ-A8P2-01 7 8110614 8110614 C T GLCCI1 Missense_Mutation p.R344C 0.40 deleterious(0.03) probably_damaging(0.968) TCGA-VQ-A8P2-01 7 8124647 8124647 C T GLCCI1 Missense_Mutation p.A433V 0.41 tolerated(0.2) benign(0.435) TCGA-VQ-A8P2-01 7 81613995 81613995 T C CACNA2D1 Missense_Mutation p.Y610C 0.40 deleterious(0.02) possibly_damaging(0.906) TCGA-VQ-A8P2-01 7 82586077 82586078 AA - PCLO Frame_Shift_Del p.S1398Tfs*13 0.21 TCGA-VQ-A8P2-01 7 82595270 82595270 G A PCLO Silent p.G1278G 0.42 TCGA-VQ-A8P2-01 7 82595437 82595437 C T PCLO Missense_Mutation p.E1223K 0.40 unknown(0) TCGA-VQ-A8P2-01 7 82595446 82595447 - T PCLO Frame_Shift_Ins p.L1220Tfs*4 0.11 TCGA-VQ-A8P2-01 7 82764524 82764524 G T PCLO Missense_Mutation p.S781Y 0.36 unknown(0) TCGA-VQ-A8P2-01 7 83590759 83590759 C T SEMA3A Silent p.K748K 0.25 TCGA-VQ-A8P2-01 7 83689812 83689812 G A SEMA3A Silent p.D172D 0.41 TCGA-VQ-A8P2-01 7 84666334 84666334 G T SEMA3D Silent p.G354G 0.10 TCGA-VQ-A8P2-01 7 84666347 84666347 G A SEMA3D Missense_Mutation p.S350F 0.44 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 7 84685103 84685105 AAG - SEMA3D In_Frame_Del p.F264del 0.28 TCGA-VQ-A8P2-01 7 86415913 86415913 G A GRM3 Missense_Mutation p.A269T 0.30 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 7 86416061 86416061 A G GRM3 Missense_Mutation p.Y318C 0.44 deleterious(0) benign(0.354) TCGA-VQ-A8P2-01 7 86547797 86547797 C A KIAA1324L Missense_Mutation p.E518D 0.42 tolerated(0.09) benign(0.307) TCGA-VQ-A8P2-01 7 86811581 86811581 G T DMTF1 Missense_Mutation p.G250W 0.45 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 7 86998796 86998796 C T CROT Missense_Mutation p.L246F 0.42 tolerated(0.73) benign(0.008) TCGA-VQ-A8P2-01 7 87174282 87174282 C T ABCB1 Missense_Mutation p.A641T 0.23 tolerated(0.54) benign(0.001) TCGA-VQ-A8P2-01 7 87459246 87459246 G A RUNDC3B Silent p.T441T 0.35 TCGA-VQ-A8P2-01 7 87757929 87757929 C T ADAM22 Missense_Mutation p.P231S 0.42 tolerated(0.48) benign(0.013) TCGA-VQ-A8P2-01 7 87774751 87774751 G A ADAM22 Missense_Mutation p.E472K 0.15 tolerated(0.64) benign(0.004) TCGA-VQ-A8P2-01 7 88965806 88965806 G T ZNF804B Missense_Mutation p.Q1170H 0.34 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 7 89937089 89937089 C T C7orf63 Missense_Mutation p.A824V 0.52 deleterious(0.04) benign(0.423) TCGA-VQ-A8P2-01 7 90894915 90894915 C T FZD1 Silent p.P240P 0.35 TCGA-VQ-A8P2-01 7 90895744 90895744 C T FZD1 Missense_Mutation p.R517C 0.35 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 7 909145 909145 G A SUN1 Missense_Mutation p.A714T 0.42 tolerated(0.36) probably_damaging(0.996) TCGA-VQ-A8P2-01 7 91503503 91503503 C T MTERF Missense_Mutation p.R202H 0.52 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8P2-01 7 92099487 92099487 C T ERVW-1 Missense_Mutation p.R70H 0.38 tolerated(0.12) possibly_damaging(0.763) TCGA-VQ-A8P2-01 7 92099563 92099563 C T ERVW-1 Missense_Mutation p.G45R 0.37 tolerated_low_confidence(0.09) probably_damaging(0.955) TCGA-VQ-A8P2-01 7 92119117 92119117 C A PEX1 Nonsense_Mutation p.E1183* 0.25 TCGA-VQ-A8P2-01 7 92143170 92143170 C A PEX1 Nonsense_Mutation p.E451* 0.40 TCGA-VQ-A8P2-01 7 92163809 92163809 A G RBM48 Missense_Mutation p.K181R 0.34 tolerated(0.24) benign(0.021) TCGA-VQ-A8P2-01 7 92761055 92761055 G A SAMD9L Silent p.L1410L 0.06 TCGA-VQ-A8P2-01 7 92888878 92888878 G T CCDC132 Missense_Mutation p.G198V 0.29 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8P2-01 7 93072971 93072971 G A CALCR Silent p.V283V 0.48 TCGA-VQ-A8P2-01 7 93112146 93112146 G A CALCR Intron 0.41 TCGA-VQ-A8P2-01 7 93116272 93116272 G A CALCR Missense_Mutation p.R26W 0.29 tolerated(0.21) benign(0.003) TCGA-VQ-A8P2-01 7 94024307 94024307 C A COL1A2 5'UTR 0.10 TCGA-VQ-A8P2-01 7 94285371 94285371 C T SGCE Missense_Mutation p.A14T 0.36 deleterious_low_confidence(0.02) benign(0.189) TCGA-VQ-A8P2-01 7 94539569 94539569 T C PPP1R9A Silent p.G48G 0.29 TCGA-VQ-A8P2-01 7 94881152 94881152 G C PPP1R9A Silent p.V825V 0.32 TCGA-VQ-A8P2-01 7 94928192 94928192 C T PON1 3'UTR 0.50 TCGA-VQ-A8P2-01 7 95025623 95025623 G T PON3 Missense_Mutation p.L14M 0.28 deleterious(0.03) unknown(0) TCGA-VQ-A8P2-01 7 95224443 95224443 G A PDK4 Missense_Mutation p.A55V 0.45 tolerated(0.46) benign(0.003) TCGA-VQ-A8P2-01 7 97821733 97821733 C T LMTK2 Silent p.F652F 0.17 TCGA-VQ-A8P2-01 7 97870574 97870574 G A TECPR1 Intron 0.22 TCGA-VQ-A8P2-01 7 98249017 98249017 G T NPTX2 Missense_Mutation p.Q163H 0.49 tolerated(0.28) benign(0.034) TCGA-VQ-A8P2-01 7 98513427 98513427 C T TRRAP Missense_Mutation p.R761W 0.31 probably_damaging(1) TCGA-VQ-A8P2-01 7 98543387 98543387 C T TRRAP Silent p.C1497C 0.46 TCGA-VQ-A8P2-01 7 98547352 98547352 C T TRRAP Nonsense_Mutation p.R1668* 0.33 TCGA-VQ-A8P2-01 7 98563404 98563404 C A TRRAP Silent p.I2347I 0.23 TCGA-VQ-A8P2-01 7 98565172 98565172 C T TRRAP Missense_Mutation p.R2448C 0.16 benign(0.185) TCGA-VQ-A8P2-01 7 98628298 98628298 C T SMURF1 Missense_Mutation p.R728Q 0.35 deleterious(0) probably_damaging(0.948) TCGA-VQ-A8P2-01 7 98995554 98995554 G T PDAP1 Missense_Mutation p.L140M 0.30 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 7 99022687 99022687 G T ATP5J2-PTCD1 Missense_Mutation p.L539I 0.47 tolerated(0.12) benign(0.328) TCGA-VQ-A8P2-01 7 99129631 99129631 C T ZKSCAN5 Missense_Mutation p.T760I 0.29 tolerated(0.36) benign(0) TCGA-VQ-A8P2-01 7 99367776 99367776 G T CYP3A4 Missense_Mutation p.S134Y 0.10 deleterious(0) probably_damaging(0.97) TCGA-VQ-A8P2-01 7 99447301 99447301 C T CYP3A43 Silent p.P218P 0.32 TCGA-VQ-A8P2-01 7 99489938 99489938 C T TRIM4 Missense_Mutation p.D451N 0.37 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 7 99569369 99569369 C T AZGP1 Missense_Mutation p.G113R 0.33 deleterious(0) possibly_damaging(0.806) TCGA-VQ-A8P2-01 7 99704036 99704036 G A AP4M1 Missense_Mutation p.E346K 0.45 deleterious(0.03) benign(0.056) TCGA-VQ-A8P2-01 7 99706041 99706041 C A TAF6 Missense_Mutation p.Q506H 0.16 deleterious(0.01) probably_damaging(0.99) TCGA-VQ-A8P2-01 7 99754149 99754149 C T C7orf43 Missense_Mutation p.R367H 0.20 deleterious(0.02) benign(0.279) TCGA-VQ-A8P2-01 7 99821643 99821643 G A GATS Silent p.N91N 0.40 TCGA-VQ-A8P2-01 8 100654600 100654600 C T VPS13B Missense_Mutation p.P1953S 0.28 deleterious(0) probably_damaging(0.968) TCGA-VQ-A8P2-01 8 100847779 100847779 T G VPS13B Missense_Mutation p.F3277C 0.19 tolerated(0.09) possibly_damaging(0.759) TCGA-VQ-A8P2-01 8 100847807 100847807 C T VPS13B Silent p.S3286S 0.22 TCGA-VQ-A8P2-01 8 101270769 101270769 G A RNF19A 3'UTR 0.25 TCGA-VQ-A8P2-01 8 101608891 101608891 C T SNX31 Silent p.V318V 0.11 TCGA-VQ-A8P2-01 8 103293706 103293706 G A UBR5 Missense_Mutation p.A1913V 0.28 deleterious(0.01) probably_damaging(0.97) TCGA-VQ-A8P2-01 8 103297779 103297779 C T UBR5 Missense_Mutation p.A1816T 0.27 tolerated(0.64) benign(0.444) TCGA-VQ-A8P2-01 8 103298791 103298791 G A UBR5 Missense_Mutation p.S1671L 0.22 deleterious(0.04) probably_damaging(0.942) TCGA-VQ-A8P2-01 8 103664471 103664471 G T KLF10 Missense_Mutation p.P64H 0.22 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 8 10383149 10383149 C T PRSS55 Silent p.L18L 0.37 TCGA-VQ-A8P2-01 8 103846958 103846958 G A AZIN1 Missense_Mutation p.A201V 0.29 deleterious(0.05) benign(0.122) TCGA-VQ-A8P2-01 8 104053124 104053124 G T ATP6V1C1 Missense_Mutation p.E20D 0.27 tolerated(0.36) benign(0.008) TCGA-VQ-A8P2-01 8 104438300 104438300 C T DCAF13 Missense_Mutation p.T284I 0.17 deleterious(0.03) benign(0.155) TCGA-VQ-A8P2-01 8 10465475 10465475 C A RP1L1 Nonsense_Mutation p.E2045* 0.14 TCGA-VQ-A8P2-01 8 10470516 10470516 G A RP1L1 Silent p.P364P 0.11 TCGA-VQ-A8P2-01 8 10470642 10470642 G A RP1L1 Silent p.S322S 0.10 TCGA-VQ-A8P2-01 8 10470816 10470816 C T RP1L1 Silent p.S264S 0.25 TCGA-VQ-A8P2-01 8 104709390 104709390 C T RIMS2 Nonsense_Mutation p.Q85* 0.09 TCGA-VQ-A8P2-01 8 10480335 10480335 G T RP1L1 Missense_Mutation p.A126D 0.21 probably_damaging(0.988) TCGA-VQ-A8P2-01 8 10480525 10480525 C T RP1L1 Missense_Mutation p.A63T 0.26 probably_damaging(0.944) TCGA-VQ-A8P2-01 8 104948952 104948952 T C RIMS2 Splice_Site p.X849_splice 0.23 TCGA-VQ-A8P2-01 8 105105835 105105835 T C RIMS2 Intron 0.19 TCGA-VQ-A8P2-01 8 105360960 105360960 G A DCSTAMP Silent p.A60A 0.15 TCGA-VQ-A8P2-01 8 105509882 105509882 G A LRP12 Missense_Mutation p.R300C 0.13 deleterious(0.01) possibly_damaging(0.668) TCGA-VQ-A8P2-01 8 106814445 106814445 C T ZFPM2 Missense_Mutation p.T712I 0.22 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 8 10755416 10755416 C T XKR6 3'UTR 0.32 TCGA-VQ-A8P2-01 8 108297024 108297024 G A ANGPT1 Missense_Mutation p.A364V 0.32 tolerated(0.34) benign(0.009) TCGA-VQ-A8P2-01 8 109001376 109001376 C T RSPO2 Missense_Mutation p.R64Q 0.25 tolerated(0.07) probably_damaging(0.935) TCGA-VQ-A8P2-01 8 109482127 109482127 G A EMC2 Missense_Mutation p.E146K 0.51 tolerated(0.2) benign(0.17) TCGA-VQ-A8P2-01 8 109796743 109796743 A T TMEM74 Silent p.S195S 0.36 TCGA-VQ-A8P2-01 8 110100420 110100420 C T TRHR Missense_Mutation p.P227S 0.22 tolerated(0.07) benign(0.159) TCGA-VQ-A8P2-01 8 110100431 110100431 C T TRHR Silent p.N230N 0.18 TCGA-VQ-A8P2-01 8 110131741 110131741 A G TRHR 3'UTR 0.16 TCGA-VQ-A8P2-01 8 110257569 110257569 C T NUDCD1 Missense_Mutation p.A481T 0.17 deleterious(0) probably_damaging(0.975) TCGA-VQ-A8P2-01 8 110334615 110334615 G A NUDCD1 Missense_Mutation p.H66Y 0.28 tolerated(1) benign(0.032) TCGA-VQ-A8P2-01 8 110527424 110527424 C T PKHD1L1 Missense_Mutation p.S3860F 0.24 deleterious(0.04) benign(0.429) TCGA-VQ-A8P2-01 8 110984986 110984986 A C KCNV1 Silent p.T164T 0.25 TCGA-VQ-A8P2-01 8 11180256 11180256 G A MTMR9 Missense_Mutation p.A537T 0.22 tolerated(0.35) benign(0.027) TCGA-VQ-A8P2-01 8 11301797 11301797 G T FAM167A Missense_Mutation p.R42S 0.23 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 8 113259312 113259312 C A CSMD3 Missense_Mutation p.G3387W 0.16 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 8 113275937 113275937 G A CSMD3 Silent p.L3265L 0.15 TCGA-VQ-A8P2-01 8 113275963 113275963 C T CSMD3 Missense_Mutation p.S3256N 0.13 deleterious(0.02) benign(0.377) TCGA-VQ-A8P2-01 8 113277716 113277716 C T CSMD3 Silent p.T3204T 0.28 TCGA-VQ-A8P2-01 8 113301625 113301625 G A CSMD3 Silent p.G3039G 0.23 TCGA-VQ-A8P2-01 8 113326747 113326747 C A CSMD3 Missense_Mutation p.S2487I 0.08 tolerated(0.62) benign(0.099) TCGA-VQ-A8P2-01 8 113504867 113504867 C A CSMD3 Missense_Mutation p.G1710V 0.25 deleterious(0) probably_damaging(0.994) TCGA-VQ-A8P2-01 8 113562995 113562995 A G CSMD3 Missense_Mutation p.I1490T 0.22 deleterious(0) benign(0.099) TCGA-VQ-A8P2-01 8 113585757 113585757 C T CSMD3 Missense_Mutation p.D1339N 0.30 tolerated(0.37) benign(0.123) TCGA-VQ-A8P2-01 8 113585834 113585834 G A CSMD3 Missense_Mutation p.A1313V 0.11 deleterious(0.02) possibly_damaging(0.542) TCGA-VQ-A8P2-01 8 11696131 11696131 C A FDFT1 3'UTR 0.11 TCGA-VQ-A8P2-01 8 11702661 11702661 G A CTSB Silent p.R331R 0.23 TCGA-VQ-A8P2-01 8 117658744 117658744 C T EIF3H Silent p.Q309Q 0.07 TCGA-VQ-A8P2-01 8 117783835 117783835 A C UTP23 Silent p.S168S 0.35 TCGA-VQ-A8P2-01 8 117784008 117784009 - A UTP23 Frame_Shift_Ins p.R228Kfs*9 0.15 TCGA-VQ-A8P2-01 8 117859695 117859695 T C RAD21 3'UTR 0.09 TCGA-VQ-A8P2-01 8 11851516 11851516 G A DEFB134 Silent p.C58C 0.13 TCGA-VQ-A8P2-01 8 119122557 119122557 C A EXT1 Missense_Mutation p.R243S 0.28 tolerated(0.42) possibly_damaging(0.524) TCGA-VQ-A8P2-01 8 12040220 12040220 G T FAM86B1 3'UTR 0.24 TCGA-VQ-A8P2-01 8 120431533 120431533 G A NOV Missense_Mutation p.R242Q 0.22 deleterious(0.02) benign(0.43) TCGA-VQ-A8P2-01 8 120612963 120612963 C T ENPP2 Silent p.E309E 0.25 TCGA-VQ-A8P2-01 8 120620205 120620205 C T ENPP2 Missense_Mutation p.A264T 0.26 deleterious(0.03) probably_damaging(0.923) TCGA-VQ-A8P2-01 8 120886181 120886181 A G DEPTOR Missense_Mutation p.E32G 0.26 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 8 121062051 121062051 C T DEPTOR 3'UTR 0.29 TCGA-VQ-A8P2-01 8 121224754 121224754 T C COL14A1 Missense_Mutation p.V512A 0.28 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 8 121293246 121293246 G A COL14A1 Missense_Mutation p.V1258M 0.24 deleterious(0.02) benign(0.361) TCGA-VQ-A8P2-01 8 122627016 122627016 G A HAS2 Missense_Mutation p.T331I 0.15 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 8 123964152 123964152 C T ZHX2 Silent p.P134P 0.21 TCGA-VQ-A8P2-01 8 123964703 123964703 G A ZHX2 Missense_Mutation p.G318D 0.17 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 8 124162316 124162316 G A TBC1D31 Silent p.L1005L 0.08 TCGA-VQ-A8P2-01 8 124267321 124267321 T C ZHX1 Missense_Mutation p.Y289C 0.09 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 8 124335215 124335215 C T ATAD2 Missense_Mutation p.R1365Q 0.22 tolerated(0.57) benign(0.003) TCGA-VQ-A8P2-01 8 124371510 124371510 G A ATAD2 Missense_Mutation p.P445S 0.26 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 8 124373885 124373885 G A ATAD2 Nonsense_Mutation p.R351* 0.24 TCGA-VQ-A8P2-01 8 124526525 124526525 C T FBXO32 Missense_Mutation p.A141T 0.19 deleterious(0.04) possibly_damaging(0.898) TCGA-VQ-A8P2-01 8 124710686 124710686 C A ANXA13 Missense_Mutation p.K141N 0.26 deleterious(0) probably_damaging(0.967) TCGA-VQ-A8P2-01 8 124818451 124818451 G T FAM91A1 Missense_Mutation p.D672Y 0.24 deleterious(0.02) possibly_damaging(0.739) TCGA-VQ-A8P2-01 8 125022935 125022935 A G FER1L6 Missense_Mutation p.E601G 0.26 tolerated(0.28) benign(0.002) TCGA-VQ-A8P2-01 8 125332344 125332344 G A TMEM65 Missense_Mutation p.R202C 0.16 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 8 125464336 125464336 C T TRMT12 Missense_Mutation p.P390S 0.23 tolerated(0.3) benign(0.002) TCGA-VQ-A8P2-01 8 125498265 125498265 G A RNF139 Silent p.S125S 0.28 TCGA-VQ-A8P2-01 8 125989838 125989838 C A ZNF572 Missense_Mutation p.P443H 0.08 tolerated(0.44) probably_damaging(0.985) TCGA-VQ-A8P2-01 8 126011785 126011785 G A SQLE Missense_Mutation p.R47H 0.14 tolerated_low_confidence(0.24) benign(0.007) TCGA-VQ-A8P2-01 8 12879199 12879199 T C KIAA1456 Silent p.H337H 0.24 TCGA-VQ-A8P2-01 8 12957382 12957382 G A DLC1 Missense_Mutation p.L822F 0.27 deleterious(0) probably_damaging(0.99) TCGA-VQ-A8P2-01 8 12957403 12957403 G A DLC1 Missense_Mutation p.P815S 0.25 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 8 130788361 130788361 C T GSDMC Missense_Mutation p.D131N 0.36 tolerated(0.41) benign(0.245) TCGA-VQ-A8P2-01 8 130883735 130883735 C A FAM49B Missense_Mutation p.Q27H 0.14 deleterious(0.04) probably_damaging(0.918) TCGA-VQ-A8P2-01 8 131140189 131140189 G A ASAP1 Silent p.C455C 0.39 TCGA-VQ-A8P2-01 8 131226882 131226882 G A ASAP1 Nonsense_Mutation p.R109* 0.33 TCGA-VQ-A8P2-01 8 131414175 131414175 G T ASAP1 Silent p.A5A 0.27 TCGA-VQ-A8P2-01 8 131833591 131833591 C T ADCY8 Silent p.Q917Q 0.46 TCGA-VQ-A8P2-01 8 131922048 131922048 G A ADCY8 Silent p.L516L 0.32 TCGA-VQ-A8P2-01 8 132968016 132968016 C T EFR3A Missense_Mutation p.R214C 0.23 deleterious(0.01) possibly_damaging(0.827) TCGA-VQ-A8P2-01 8 133141603 133141603 G A KCNQ3 Missense_Mutation p.T842M 0.23 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 8 133141789 133141789 C T KCNQ3 Missense_Mutation p.R780H 0.29 tolerated(0.05) benign(0.017) TCGA-VQ-A8P2-01 8 133150224 133150224 C A KCNQ3 Missense_Mutation p.E536D 0.27 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 8 133492466 133492466 C T KCNQ3 Missense_Mutation p.R105Q 0.24 deleterious(0) probably_damaging(0.978) TCGA-VQ-A8P2-01 8 133816192 133816192 T C PHF20L1 Silent p.P212P 0.14 TCGA-VQ-A8P2-01 8 133855000 133855000 C T PHF20L1 Silent p.L876L 0.10 TCGA-VQ-A8P2-01 8 133905943 133905943 T A TG Missense_Mutation p.S924T 0.15 tolerated(0.54) benign(0.004) TCGA-VQ-A8P2-01 8 133906163 133906163 C T TG Missense_Mutation p.A997V 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A8P2-01 8 134233078 134233078 G A WISP1 Missense_Mutation p.A202T 0.24 tolerated(0.05) benign(0.008) TCGA-VQ-A8P2-01 8 135614016 135614016 C T ZFAT Missense_Mutation p.G649D 0.09 tolerated_low_confidence(0.65) benign(0.212) TCGA-VQ-A8P2-01 8 139164396 139164396 G A FAM135B Silent p.P774P 0.27 TCGA-VQ-A8P2-01 8 139165369 139165369 A G FAM135B Missense_Mutation p.V450A 0.33 tolerated(0.6) benign(0.001) TCGA-VQ-A8P2-01 8 139255208 139255208 A G FAM135B Missense_Mutation p.Y216H 0.21 deleterious(0) possibly_damaging(0.781) TCGA-VQ-A8P2-01 8 139606310 139606310 C T COL22A1 Missense_Mutation p.R1522H 0.21 unknown(0) TCGA-VQ-A8P2-01 8 139606405 139606405 C T COL22A1 Silent p.A1490A 0.20 TCGA-VQ-A8P2-01 8 139631709 139631709 G A COL22A1 Nonsense_Mutation p.R1272* 0.21 TCGA-VQ-A8P2-01 8 140715007 140715007 G T KCNK9 Missense_Mutation p.Q77K 0.28 deleterious(0) possibly_damaging(0.62) TCGA-VQ-A8P2-01 8 141297789 141297789 C T TRAPPC9 Silent p.A731A 0.20 TCGA-VQ-A8P2-01 8 141297817 141297817 C T TRAPPC9 Missense_Mutation p.G722E 0.18 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 8 141542206 141542206 G A AGO2 Silent p.H839H 0.22 TCGA-VQ-A8P2-01 8 141566003 141566003 C T AGO2 Missense_Mutation p.G421R 0.18 deleterious(0) benign(0.149) TCGA-VQ-A8P2-01 8 141595333 141595333 A G AGO2 Missense_Mutation p.S34P 0.31 tolerated(0.2) benign(0.065) TCGA-VQ-A8P2-01 8 141727802 141727802 G A PTK2 Silent p.I679I 0.28 TCGA-VQ-A8P2-01 8 141745412 141745412 C T PTK2 Silent p.T656T 0.09 TCGA-VQ-A8P2-01 8 142161751 142161751 G A DENND3 Missense_Mutation p.V217I 0.22 tolerated(0.06) probably_damaging(0.949) TCGA-VQ-A8P2-01 8 142476639 142476639 G A MROH5 3'UTR 0.24 TCGA-VQ-A8P2-01 8 142490046 142490046 G T MROH5 3'UTR 0.10 TCGA-VQ-A8P2-01 8 142517302 142517302 G A MROH5 5'UTR 0.33 TCGA-VQ-A8P2-01 8 143310910 143310910 G A TSNARE1 Silent p.L493L 0.22 TCGA-VQ-A8P2-01 8 143599589 143599589 G A BAI1 Missense_Mutation p.V970M 0.23 deleterious(0.04) possibly_damaging(0.867) TCGA-VQ-A8P2-01 8 143746024 143746024 C A JRK RNA 0.26 TCGA-VQ-A8P2-01 8 143782006 143782006 C A LY6K Missense_Mutation p.L21M 0.50 tolerated(0.13) possibly_damaging(0.721) TCGA-VQ-A8P2-01 8 143823792 143823792 G T SLURP1 Silent p.R4R 0.11 TCGA-VQ-A8P2-01 8 143956474 143956474 C T CYP11B1 Missense_Mutation p.G433S 0.21 tolerated(0.14) benign(0.158) TCGA-VQ-A8P2-01 8 143960827 143960827 C A CYP11B1 Intron 0.44 TCGA-VQ-A8P2-01 8 144103050 144103050 C T LY6E Silent p.G80G 0.23 TCGA-VQ-A8P2-01 8 144124585 144124585 G A C8orf31 Missense_Mutation p.C31Y 0.31 deleterious_low_confidence(0.04) possibly_damaging(0.588) TCGA-VQ-A8P2-01 8 144378770 144378770 C T ZNF696 Missense_Mutation p.R309C 0.33 tolerated(0.18) probably_damaging(0.985) TCGA-VQ-A8P2-01 8 144462875 144462875 C T RHPN1 Nonsense_Mutation p.Q445* 0.44 TCGA-VQ-A8P2-01 8 144642085 144642085 A T GSDMD Missense_Mutation p.N119I 0.30 tolerated(0.08) benign(0.063) TCGA-VQ-A8P2-01 8 144657424 144657424 C T NAPRT1 Silent p.E461E 0.29 TCGA-VQ-A8P2-01 8 144661982 144661982 C T EEF1D Missense_Mutation p.A642T 0.06 deleterious(0) probably_damaging(0.983) TCGA-VQ-A8P2-01 8 144662225 144662225 C T EEF1D Missense_Mutation p.G621E 0.33 deleterious(0) probably_damaging(0.955) TCGA-VQ-A8P2-01 8 144668455 144668455 G A EEF1D Silent p.N407N 0.50 TCGA-VQ-A8P2-01 8 144681928 144681928 C T TIGD5 Missense_Mutation p.R619C 0.16 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8P2-01 8 144696529 144696529 C T TSTA3 Missense_Mutation p.V187M 0.12 deleterious(0.01) probably_damaging(0.992) TCGA-VQ-A8P2-01 8 144696578 144696578 G A TSTA3 Silent p.P170P 0.23 TCGA-VQ-A8P2-01 8 144773796 144773796 G A ZNF707 Missense_Mutation p.V57I 0.27 tolerated(1) benign(0.003) TCGA-VQ-A8P2-01 8 144776705 144776705 G A ZNF707 3'UTR 0.41 TCGA-VQ-A8P2-01 8 144808776 144808776 T C FAM83H Missense_Mutation p.E952G 0.26 deleterious(0.03) benign(0.125) TCGA-VQ-A8P2-01 8 144886838 144886838 G A SCRIB Missense_Mutation p.A970V 0.35 benign(0.002) TCGA-VQ-A8P2-01 8 144886893 144886893 C A SCRIB Missense_Mutation p.G952C 0.35 probably_damaging(0.938) TCGA-VQ-A8P2-01 8 144895870 144895870 C T SCRIB Missense_Mutation p.R128H 0.15 probably_damaging(0.998) TCGA-VQ-A8P2-01 8 144919241 144919241 C T NRBP2 Silent p.T411T 0.35 TCGA-VQ-A8P2-01 8 144940348 144940348 G A EPPK1 Silent p.P2358P 0.05 TCGA-VQ-A8P2-01 8 144940769 144940769 C T EPPK1 Missense_Mutation p.R2218H 0.28 probably_damaging(0.938) TCGA-VQ-A8P2-01 8 144941610 144941610 C T EPPK1 Missense_Mutation p.G1938R 0.29 probably_damaging(1) TCGA-VQ-A8P2-01 8 144945756 144945756 C T EPPK1 Missense_Mutation p.A556T 0.33 benign(0.02) TCGA-VQ-A8P2-01 8 144990708 144990708 G A PLEC Silent p.D4564D 0.29 TCGA-VQ-A8P2-01 8 144992348 144992348 G A PLEC Missense_Mutation p.R4018C 0.28 benign(0.063) TCGA-VQ-A8P2-01 8 144992715 144992715 G A PLEC Silent p.H3895H 0.33 TCGA-VQ-A8P2-01 8 144994135 144994135 A G PLEC Missense_Mutation p.I3422T 0.24 benign(0.258) TCGA-VQ-A8P2-01 8 144995894 144995894 C T PLEC Missense_Mutation p.A2836T 0.24 probably_damaging(0.992) TCGA-VQ-A8P2-01 8 144997296 144997296 C A PLEC Missense_Mutation p.Q2404H 0.24 possibly_damaging(0.885) TCGA-VQ-A8P2-01 8 144998032 144998032 C T PLEC Missense_Mutation p.R2159Q 0.27 unknown(0) TCGA-VQ-A8P2-01 8 145065390 145065390 C T GRINA 5'UTR 0.16 TCGA-VQ-A8P2-01 8 145109542 145109542 G - OPLAH Frame_Shift_Del p.H870Tfs*28 0.45 TCGA-VQ-A8P2-01 8 145109754 145109754 G A OPLAH Silent p.A824A 0.14 TCGA-VQ-A8P2-01 8 145245791 145245791 G A MROH1 Missense_Mutation p.A223T 0.23 deleterious(0) probably_damaging(0.956) TCGA-VQ-A8P2-01 8 145278114 145278114 C T MROH1 Missense_Mutation p.A440V 0.33 deleterious(0.01) benign(0.066) TCGA-VQ-A8P2-01 8 145557293 145557293 C T SCRT1 Missense_Mutation p.A201T 0.22 deleterious(0) unknown(0) TCGA-VQ-A8P2-01 8 145584572 145584572 T C SLC52A2 Missense_Mutation p.I412T 0.33 tolerated(0.14) probably_damaging(0.999) TCGA-VQ-A8P2-01 8 145619432 145619432 G T CPSF1 Intron 0.33 TCGA-VQ-A8P2-01 8 145620173 145620173 G A CPSF1 Missense_Mutation p.T1113I 0.34 deleterious(0) probably_damaging(0.98) TCGA-VQ-A8P2-01 8 145620185 145620185 C T CPSF1 Missense_Mutation p.R1109H 0.41 tolerated(0.12) benign(0.037) TCGA-VQ-A8P2-01 8 145638262 145638262 C T SLC39A4 Missense_Mutation p.A566T 0.45 deleterious(0.04) possibly_damaging(0.611) TCGA-VQ-A8P2-01 8 145660436 145660436 C A TONSL Missense_Mutation p.Q990H 0.18 tolerated(0.07) benign(0.037) TCGA-VQ-A8P2-01 8 145662277 145662277 C T TONSL Missense_Mutation p.G585R 0.17 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 8 145665554 145665554 G T TONSL Missense_Mutation p.L444M 0.30 tolerated(0.06) benign(0.046) TCGA-VQ-A8P2-01 8 145700544 145700544 C T FOXH1 Missense_Mutation p.R92H 0.27 tolerated(0.63) benign(0.025) TCGA-VQ-A8P2-01 8 145729843 145729843 G A GPT Silent p.L52L 0.29 TCGA-VQ-A8P2-01 8 145737901 145737901 C T RECQL4 Missense_Mutation p.D977N 0.24 tolerated(0.6) benign(0.007) TCGA-VQ-A8P2-01 8 145745960 145745960 G A LRRC14 Missense_Mutation p.R223H 0.36 deleterious(0) probably_damaging(0.991) TCGA-VQ-A8P2-01 8 145755908 145755908 G A ARHGAP39 Silent p.S1081S 0.16 TCGA-VQ-A8P2-01 8 145759525 145759525 G A ARHGAP39 Silent p.T892T 0.32 TCGA-VQ-A8P2-01 8 145947633 145947633 C T ZNF251 Missense_Mutation p.S471N 0.27 tolerated(0.07) benign(0.16) TCGA-VQ-A8P2-01 8 145947731 145947731 G A ZNF251 Silent p.C438C 0.52 TCGA-VQ-A8P2-01 8 145980149 145980149 G A ZNF251 5'UTR 0.16 TCGA-VQ-A8P2-01 8 146033178 146033178 G T ZNF517 Nonsense_Mutation p.E293* 0.32 TCGA-VQ-A8P2-01 8 146067126 146067126 G A ZNF7 Missense_Mutation p.A212T 0.41 tolerated(0.74) benign(0.003) TCGA-VQ-A8P2-01 8 146067178 146067178 A - ZNF7 Frame_Shift_Del p.K231Sfs*59 0.17 TCGA-VQ-A8P2-01 8 1497583 1497583 C A DLGAP2 Missense_Mutation p.P242T 0.21 tolerated(0.21) benign(0.028) TCGA-VQ-A8P2-01 8 1513940 1513940 C T DLGAP2 Missense_Mutation p.A361V 0.19 deleterious(0) possibly_damaging(0.873) TCGA-VQ-A8P2-01 8 15508217 15508217 A G TUSC3 Missense_Mutation p.E107G 0.32 deleterious(0.01) possibly_damaging(0.845) TCGA-VQ-A8P2-01 8 15508235 15508235 C T TUSC3 Missense_Mutation p.A113V 0.22 deleterious(0.01) probably_damaging(0.99) TCGA-VQ-A8P2-01 8 15967636 15967636 G T MSR1 Silent p.A438A 0.22 TCGA-VQ-A8P2-01 8 15998443 15998443 C T MSR1 Intron 0.16 TCGA-VQ-A8P2-01 8 1616574 1616574 G A DLGAP2 Silent p.T550T 0.29 TCGA-VQ-A8P2-01 8 1616801 1616801 C T DLGAP2 Missense_Mutation p.A626V 0.31 tolerated(0.21) benign(0.274) TCGA-VQ-A8P2-01 8 163616 163616 C T RPL23AP53 RNA 0.09 TCGA-VQ-A8P2-01 8 17157293 17157293 T C MTMR7 3'UTR 0.21 TCGA-VQ-A8P2-01 8 17230708 17230708 T - MTMR7 Frame_Shift_Del p.A23Qfs*3 0.19 TCGA-VQ-A8P2-01 8 17541951 17541951 A G MTUS1 Silent p.Y908Y 0.27 TCGA-VQ-A8P2-01 8 17731566 17731566 C G FGL1 Missense_Mutation p.W155S 0.20 deleterious(0) probably_damaging(0.958) TCGA-VQ-A8P2-01 8 17838265 17838265 G T PCM1 Splice_Site p.X1370_splice 0.26 TCGA-VQ-A8P2-01 8 18258476 18258476 G A NAT2 3'UTR 0.31 TCGA-VQ-A8P2-01 8 18430060 18430060 G A PSD3 Missense_Mutation p.A921V 0.32 tolerated(0.12) possibly_damaging(0.841) TCGA-VQ-A8P2-01 8 18490278 18490278 G T PSD3 Missense_Mutation p.T752N 0.30 deleterious(0.03) possibly_damaging(0.52) TCGA-VQ-A8P2-01 8 18729494 18729494 C A PSD3 Missense_Mutation p.G294C 0.08 deleterious_low_confidence(0.04) benign(0.033) TCGA-VQ-A8P2-01 8 19263452 19263452 G A CSGALNACT1 Missense_Mutation p.R480C 0.26 tolerated(0.18) possibly_damaging(0.906) TCGA-VQ-A8P2-01 8 19679998 19679998 G T INTS10 Nonsense_Mutation p.E164* 0.24 TCGA-VQ-A8P2-01 8 19700363 19700363 G A INTS10 Silent p.S548S 0.26 TCGA-VQ-A8P2-01 8 20004787 20004787 C T SLC18A1 Silent p.P482P 0.33 TCGA-VQ-A8P2-01 8 20004848 20004848 A G SLC18A1 Missense_Mutation p.V462A 0.26 tolerated(0.28) benign(0.075) TCGA-VQ-A8P2-01 8 20022610 20022610 C A SLC18A1 Missense_Mutation p.K289N 0.09 tolerated(0.05) benign(0.284) TCGA-VQ-A8P2-01 8 20036885 20036885 A C SLC18A1 Missense_Mutation p.S79A 0.20 tolerated(0.38) benign(0.047) TCGA-VQ-A8P2-01 8 2005884 2005884 G A MYOM2 Silent p.T182T 0.21 TCGA-VQ-A8P2-01 8 20077936 20077936 C T ATP6V1B2 3'UTR 0.38 TCGA-VQ-A8P2-01 8 2088786 2088786 G A MYOM2 Missense_Mutation p.R1314H 0.28 deleterious(0.01) probably_damaging(0.998) TCGA-VQ-A8P2-01 8 21843137 21843137 C T XPO7 Silent p.I504I 0.28 TCGA-VQ-A8P2-01 8 21848409 21848409 C T XPO7 Missense_Mutation p.R674C 0.21 deleterious(0) probably_damaging(0.985) TCGA-VQ-A8P2-01 8 21931345 21931345 C A DMTN Silent p.T278T 0.12 TCGA-VQ-A8P2-01 8 21956026 21956026 C T FAM160B2 Silent p.S287S 0.31 TCGA-VQ-A8P2-01 8 21959239 21959239 C T FAM160B2 Silent p.R576R 0.23 TCGA-VQ-A8P2-01 8 21981285 21981285 G A HR Missense_Mutation p.R598C 0.46 deleterious(0.05) possibly_damaging(0.841) TCGA-VQ-A8P2-01 8 22034149 22034149 C A BMP1 Silent p.T179T 0.27 TCGA-VQ-A8P2-01 8 22079056 22079056 C A PHYHIP Missense_Mutation p.S268I 0.09 tolerated(0.21) benign(0.003) TCGA-VQ-A8P2-01 8 22138637 22138637 C A PIWIL2 Missense_Mutation p.S68Y 0.25 deleterious_low_confidence(0.04) benign(0.332) TCGA-VQ-A8P2-01 8 22414288 22414288 T A SORBS3 Missense_Mutation p.I94N 0.25 tolerated(0.32) benign(0.028) TCGA-VQ-A8P2-01 8 22438968 22438968 C T PDLIM2 Missense_Mutation p.A307V 0.29 tolerated(0.08) benign(0.275) TCGA-VQ-A8P2-01 8 22465547 22465547 G A CCAR2 Missense_Mutation p.G185S 0.31 deleterious(0.02) probably_damaging(0.999) TCGA-VQ-A8P2-01 8 22861943 22861943 G A RHOBTB2 Missense_Mutation p.R21H 0.28 tolerated_low_confidence(0.1) benign(0.002) TCGA-VQ-A8P2-01 8 22865211 22865211 C T RHOBTB2 Missense_Mutation p.R507C 0.27 deleterious(0) probably_damaging(0.931) TCGA-VQ-A8P2-01 8 22874843 22874843 G A RHOBTB2 Missense_Mutation p.R704Q 0.21 tolerated(0.34) benign(0.006) TCGA-VQ-A8P2-01 8 23185992 23185992 G A LOXL2 Silent p.C351C 0.24 TCGA-VQ-A8P2-01 8 23299203 23299203 C T ENTPD4 Missense_Mutation p.G254E 0.33 deleterious(0.03) benign(0.297) TCGA-VQ-A8P2-01 8 23709854 23709854 G A STC1 Silent p.C54C 0.19 TCGA-VQ-A8P2-01 8 24167472 24167473 - A ADAM28 Frame_Shift_Ins p.N75Kfs*15 0.27 TCGA-VQ-A8P2-01 8 24257686 24257686 A - ADAMDEC1 Frame_Shift_Del p.K341Rfs*7 0.36 TCGA-VQ-A8P2-01 8 24344716 24344716 C T ADAM7 Missense_Mutation p.T326I 0.29 tolerated(0.5) benign(0.002) TCGA-VQ-A8P2-01 8 24771870 24771870 C T NEFM Silent p.R188R 0.29 TCGA-VQ-A8P2-01 8 24813619 24813619 C T CTD-2168K21.2 5'Flank 0.15 TCGA-VQ-A8P2-01 8 25222207 25222207 G A DOCK5 Missense_Mutation p.S1037N 0.40 tolerated(1) benign(0.001) TCGA-VQ-A8P2-01 8 25224427 25224427 C T DOCK5 Silent p.T1055T 0.18 TCGA-VQ-A8P2-01 8 25258569 25258569 G T DOCK5 Missense_Mutation p.G1638V 0.06 deleterious(0) probably_damaging(0.992) TCGA-VQ-A8P2-01 8 25319606 25319606 G A CDCA2 Missense_Mutation p.R90H 0.20 deleterious(0) probably_damaging(0.957) TCGA-VQ-A8P2-01 8 25325900 25325900 G A CDCA2 Missense_Mutation p.A236T 0.28 tolerated(0.32) benign(0.02) TCGA-VQ-A8P2-01 8 25715850 25715850 C T EBF2 Missense_Mutation p.G505S 0.16 tolerated_low_confidence(0.2) benign(0.001) TCGA-VQ-A8P2-01 8 26151190 26151190 G T PPP2R2A Nonsense_Mutation p.G16* 0.13 TCGA-VQ-A8P2-01 8 26220317 26220317 G A PPP2R2A Missense_Mutation p.R262Q 0.29 deleterious(0.01) possibly_damaging(0.58) TCGA-VQ-A8P2-01 8 26227751 26227751 G A PPP2R2A Missense_Mutation p.R399H 0.25 tolerated(0.1) benign(0.008) TCGA-VQ-A8P2-01 8 26238866 26238866 C T BNIP3L 5'Flank 0.22 TCGA-VQ-A8P2-01 8 26435770 26435770 G T DPYSL2 5'UTR 0.23 TCGA-VQ-A8P2-01 8 26505233 26505233 C T DPYSL2 Missense_Mutation p.R400C 0.10 deleterious(0.04) probably_damaging(0.999) TCGA-VQ-A8P2-01 8 26623494 26623494 T C ADRA1A Intron 0.21 TCGA-VQ-A8P2-01 8 26906454 26906454 C T MIR548H4 RNA 0.35 TCGA-VQ-A8P2-01 8 27098735 27098735 C T STMN4 Missense_Mutation p.V79I 0.48 tolerated(0.06) probably_damaging(0.981) TCGA-VQ-A8P2-01 8 27146781 27146781 C A TRIM35 Nonsense_Mutation p.E268* 0.18 TCGA-VQ-A8P2-01 8 27168384 27168384 G A TRIM35 Silent p.C123C 0.26 TCGA-VQ-A8P2-01 8 27277438 27277438 C T PTK2B Silent p.S77S 0.16 TCGA-VQ-A8P2-01 8 27308338 27308338 C T PTK2B Missense_Mutation p.R805W 0.35 deleterious(0) benign(0.339) TCGA-VQ-A8P2-01 8 27320833 27320833 C T CHRNA2 Missense_Mutation p.R376Q 0.15 tolerated(0.11) possibly_damaging(0.499) TCGA-VQ-A8P2-01 8 27399054 27399054 C T EPHX2 Missense_Mutation p.R482W 0.21 deleterious(0.04) probably_damaging(0.977) TCGA-VQ-A8P2-01 8 27461898 27461898 G A CLU Missense_Mutation p.R282W 0.42 deleterious(0) probably_damaging(0.939) TCGA-VQ-A8P2-01 8 27462630 27462630 G A CLU Missense_Mutation p.R214W 0.25 tolerated(0.06) probably_damaging(0.995) TCGA-VQ-A8P2-01 8 27514297 27514297 A G SCARA3 Splice_Site p.X76_splice 0.30 TCGA-VQ-A8P2-01 8 27516065 27516065 G A SCARA3 Silent p.G126G 0.10 TCGA-VQ-A8P2-01 8 27606052 27606052 T C CCDC25 Missense_Mutation p.D103G 0.32 tolerated(0.31) benign(0.008) TCGA-VQ-A8P2-01 8 27764717 27764717 G A SCARA5 Silent p.G348G 0.24 TCGA-VQ-A8P2-01 8 27967899 27967899 A G ELP3 Missense_Mutation p.R136G 0.21 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 8 28206249 28206249 C T ZNF395 Missense_Mutation p.R510H 0.30 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 8 2820858 2820858 G A CSMD1 Missense_Mutation p.R3114C 0.25 benign(0.017) TCGA-VQ-A8P2-01 8 2824267 2824267 G A CSMD1 Silent p.A2975A 0.20 TCGA-VQ-A8P2-01 8 2830689 2830689 C T CSMD1 Missense_Mutation p.R2958H 0.09 possibly_damaging(0.66) TCGA-VQ-A8P2-01 8 28595088 28595088 G A EXTL3 Missense_Mutation p.A777T 0.11 deleterious(0.03) possibly_damaging(0.59) TCGA-VQ-A8P2-01 8 28991587 28991587 C T KIF13B Silent p.P918P 0.22 TCGA-VQ-A8P2-01 8 29023261 29023261 C A KIF13B Missense_Mutation p.R396L 0.30 deleterious(0) possibly_damaging(0.628) TCGA-VQ-A8P2-01 8 3000103 3000103 C T CSMD1 Missense_Mutation p.G2042E 0.25 probably_damaging(1) TCGA-VQ-A8P2-01 8 30209910 30209910 C T TUBBP1 RNA 0.29 TCGA-VQ-A8P2-01 8 30361864 30361864 C T RBPMS Missense_Mutation p.T103M 0.33 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 8 3045423 3045423 T C CSMD1 Missense_Mutation p.D1863G 0.14 benign(0.002) TCGA-VQ-A8P2-01 8 30539545 30539545 C T GSR Missense_Mutation p.R396Q 0.23 deleterious(0) probably_damaging(0.965) TCGA-VQ-A8P2-01 8 30651479 30651479 G A PPP2CB Missense_Mutation p.A231V 0.23 tolerated(0.2) benign(0.001) TCGA-VQ-A8P2-01 8 30695498 30695498 G A TEX15 Missense_Mutation p.P2385S 0.26 deleterious(0.03) benign(0.039) TCGA-VQ-A8P2-01 8 30890061 30890061 A C PURG Missense_Mutation p.S80A 0.18 tolerated(1) benign(0.016) TCGA-VQ-A8P2-01 8 30890262 30890262 G C PURG Missense_Mutation p.R13G 0.27 deleterious_low_confidence(0) unknown(0) TCGA-VQ-A8P2-01 8 30977935 30977935 A G WRN Silent p.L875L 0.28 TCGA-VQ-A8P2-01 8 31001132 31001132 A - WRN Frame_Shift_Del p.S1128Vfs*34 0.21 TCGA-VQ-A8P2-01 8 31498031 31498031 G T NRG1 Missense_Mutation p.K30N 0.25 deleterious(0.01) possibly_damaging(0.617) TCGA-VQ-A8P2-01 8 3165284 3165284 G T CSMD1 Missense_Mutation p.P1295T 0.27 possibly_damaging(0.908) TCGA-VQ-A8P2-01 8 3205574 3205574 G A CSMD1 Silent p.A1138A 0.21 TCGA-VQ-A8P2-01 8 32472081 32472081 A G NRG1 Silent p.S150S 0.30 TCGA-VQ-A8P2-01 8 32600255 32600255 C T NRG1 Intron 0.28 TCGA-VQ-A8P2-01 8 32621866 32621866 A C NRG1 Missense_Mutation p.E628D 0.26 tolerated(0.42) benign(0.164) TCGA-VQ-A8P2-01 8 3265724 3265724 C T CSMD1 Missense_Mutation p.A590T 0.29 benign(0.011) TCGA-VQ-A8P2-01 8 33310843 33310843 C T FUT10 Silent p.P89P 0.33 TCGA-VQ-A8P2-01 8 33318926 33318926 G A FUT10 Silent p.C15C 0.34 TCGA-VQ-A8P2-01 8 33367405 33367405 C T TTI2 Nonsense_Mutation p.W231* 0.24 TCGA-VQ-A8P2-01 8 33406938 33406938 A C RNF122 Missense_Mutation p.F115V 0.17 deleterious(0) probably_damaging(0.988) TCGA-VQ-A8P2-01 8 3566002 3566002 T A CSMD1 Missense_Mutation p.I315F 0.33 benign(0.244) TCGA-VQ-A8P2-01 8 36793212 36793212 C A KCNU1 Missense_Mutation p.P1075H 0.26 deleterious(0.04) possibly_damaging(0.628) TCGA-VQ-A8P2-01 8 36793218 36793218 C A KCNU1 Missense_Mutation p.T1077N 0.30 tolerated(0.24) benign(0.113) TCGA-VQ-A8P2-01 8 37556071 37556071 G T ZNF703 Missense_Mutation p.S551I 0.43 deleterious(0.01) probably_damaging(0.943) TCGA-VQ-A8P2-01 8 37607997 37607997 G A ERLIN2 Silent p.A214A 0.26 TCGA-VQ-A8P2-01 8 37691228 37691228 C T GPR124 Missense_Mutation p.A440V 0.28 tolerated(0.08) benign(0.332) TCGA-VQ-A8P2-01 8 37702087 37702087 C T BRF2 Missense_Mutation p.R394H 0.26 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 8 37720520 37720520 G A RAB11FIP1 Missense_Mutation p.R1249C 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A8P2-01 8 37730677 37730677 G A RAB11FIP1 Missense_Mutation p.A548V 0.13 tolerated(0.08) benign(0.077) TCGA-VQ-A8P2-01 8 37796362 37796362 G A GOT1L1 Silent p.L51L 0.28 TCGA-VQ-A8P2-01 8 38008392 38008392 T C STAR 5'UTR 0.32 TCGA-VQ-A8P2-01 8 38027436 38027436 C T LSM1 Splice_Site p.X39_splice 0.32 TCGA-VQ-A8P2-01 8 38146964 38146964 C T WHSC1L1 Missense_Mutation p.A1060T 0.27 tolerated(0.41) possibly_damaging(0.484) TCGA-VQ-A8P2-01 8 38187085 38187085 C T WHSC1L1 Silent p.P464P 0.32 TCGA-VQ-A8P2-01 8 38194920 38194920 G A WHSC1L1 Silent p.G271G 0.31 TCGA-VQ-A8P2-01 8 38250486 38250486 G T LETM2 Missense_Mutation p.Q111H 0.17 tolerated(0.17) benign(0.038) TCGA-VQ-A8P2-01 8 38264900 38264900 G A LETM2 Silent p.P397P 0.22 TCGA-VQ-A8P2-01 8 38271232 38271232 C T FGFR1 Missense_Mutation p.V826I 0.21 deleterious(0) possibly_damaging(0.555) TCGA-VQ-A8P2-01 8 38271691 38271691 G A FGFR1 Missense_Mutation p.P753L 0.24 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 8 38271707 38271707 G A FGFR1 Missense_Mutation p.H748Y 0.22 deleterious(0.04) probably_damaging(0.999) TCGA-VQ-A8P2-01 8 38271765 38271765 G A FGFR1 Silent p.G728G 0.31 TCGA-VQ-A8P2-01 8 38934828 38934828 G A ADAM9 Silent p.T593T 0.20 TCGA-VQ-A8P2-01 8 39068681 39068681 G A ADAM32 Silent p.K357K 0.21 TCGA-VQ-A8P2-01 8 39142349 39142349 G A ADAM32 3'UTR 0.30 TCGA-VQ-A8P2-01 8 39847306 39847306 C T IDO2 Nonsense_Mutation p.R219* 0.23 TCGA-VQ-A8P2-01 8 408408 408408 C T FBXO25 Missense_Mutation p.H234Y 0.26 tolerated(0.1) benign(0.105) TCGA-VQ-A8P2-01 8 41522428 41522428 C T ANK1 Intron 0.17 TCGA-VQ-A8P2-01 8 41525838 41525838 C A ANK1 Missense_Mutation p.G1822C 0.16 deleterious_low_confidence(0) possibly_damaging(0.605) TCGA-VQ-A8P2-01 8 41530074 41530074 T C ANK1 Missense_Mutation p.N1673D 0.32 tolerated_low_confidence(0.06) benign(0.044) TCGA-VQ-A8P2-01 8 41552848 41552848 G A ANK1 Missense_Mutation p.P1029S 0.25 deleterious(0) probably_damaging(0.992) TCGA-VQ-A8P2-01 8 41553999 41553999 G A ANK1 Missense_Mutation p.R989C 0.27 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 8 41554077 41554077 G A ANK1 Missense_Mutation p.R963W 0.10 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 8 41575652 41575652 G A ANK1 Missense_Mutation p.T426M 0.31 deleterious(0.04) benign(0.286) TCGA-VQ-A8P2-01 8 41577332 41577332 G A ANK1 Silent p.L351L 0.31 TCGA-VQ-A8P2-01 8 41792386 41792386 C T KAT6A Splice_Site p.X1118_splice 0.29 TCGA-VQ-A8P2-01 8 418723 418723 A G FBXO25 Silent p.G341G 0.18 TCGA-VQ-A8P2-01 8 418761 418761 C T FBXO25 Missense_Mutation p.T354M 0.27 tolerated(0.58) benign(0.005) TCGA-VQ-A8P2-01 8 41905993 41905993 C T KAT6A Missense_Mutation p.R168Q 0.33 benign(0.037) TCGA-VQ-A8P2-01 8 41906655 41906655 C T KAT6A 5'UTR 0.46 TCGA-VQ-A8P2-01 8 42012171 42012171 A - AP3M2 5'UTR 0.26 TCGA-VQ-A8P2-01 8 42026641 42026641 A - AP3M2 3'UTR 0.30 TCGA-VQ-A8P2-01 8 42162712 42162712 G A IKBKB Silent p.A132A 0.23 TCGA-VQ-A8P2-01 8 42179578 42179578 G A IKBKB Missense_Mutation p.R582Q 0.25 deleterious(0.02) possibly_damaging(0.883) TCGA-VQ-A8P2-01 8 42287697 42287697 T C SLC20A2 Missense_Mutation p.T532A 0.44 deleterious(0) probably_damaging(0.949) TCGA-VQ-A8P2-01 8 42294819 42294819 G T SLC20A2 Missense_Mutation p.A404D 0.33 tolerated(0.67) benign(0.16) TCGA-VQ-A8P2-01 8 42587054 42587054 G A CHRNB3 Missense_Mutation p.E202K 0.31 deleterious(0.04) possibly_damaging(0.861) TCGA-VQ-A8P2-01 8 42698266 42698266 G A THAP1 5'UTR 0.32 TCGA-VQ-A8P2-01 8 42841936 42841936 T C HOOK3 Silent p.N510N 0.20 TCGA-VQ-A8P2-01 8 42865516 42865516 C T HOOK3 Nonsense_Mutation p.R603* 0.11 TCGA-VQ-A8P2-01 8 42977332 42977332 G A POMK Missense_Mutation p.G122E 0.30 deleterious(0) possibly_damaging(0.793) TCGA-VQ-A8P2-01 8 48691118 48691118 C T PRKDC Missense_Mutation p.G3918R 0.26 probably_damaging(1) TCGA-VQ-A8P2-01 8 48740816 48740817 - T PRKDC Frame_Shift_Ins p.N2829Kfs*16 0.24 TCGA-VQ-A8P2-01 8 48849035 48849035 C T PRKDC Missense_Mutation p.V386I 0.07 benign(0.002) TCGA-VQ-A8P2-01 8 48883154 48883154 C T MCM4 Silent p.I506I 0.23 TCGA-VQ-A8P2-01 8 48889327 48889327 C T MCM4 Missense_Mutation p.R861C 0.34 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 8 48973321 48973321 G A UBE2V2 Missense_Mutation p.R124H 0.22 tolerated(0.15) benign(0.01) TCGA-VQ-A8P2-01 8 49643979 49643979 G T EFCAB1 Missense_Mutation p.L48M 0.30 tolerated(0.12) benign(0.292) TCGA-VQ-A8P2-01 8 51314879 51314879 T C SNTG1 Missense_Mutation p.V46A 0.24 tolerated(0.12) benign(0.099) TCGA-VQ-A8P2-01 8 51571210 51571210 G T SNTG1 Missense_Mutation p.C342F 0.24 tolerated(1) benign(0) TCGA-VQ-A8P2-01 8 53074031 53074032 - T ST18 Frame_Shift_Ins p.V500Sfs*4 0.21 TCGA-VQ-A8P2-01 8 53079456 53079456 C T ST18 Missense_Mutation p.R387H 0.27 deleterious(0) probably_damaging(0.986) TCGA-VQ-A8P2-01 8 53569195 53569195 G A RB1CC1 Missense_Mutation p.A1065V 0.28 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 8 53852963 53852963 G A NPBWR1 Missense_Mutation p.V166I 0.38 deleterious(0.04) benign(0.103) TCGA-VQ-A8P2-01 8 53852972 53852972 G A NPBWR1 Missense_Mutation p.V169I 0.21 tolerated(1) benign(0.048) TCGA-VQ-A8P2-01 8 53853313 53853313 G A NPBWR1 Silent p.T282T 0.19 TCGA-VQ-A8P2-01 8 54141881 54141881 G A OPRK1 Silent p.I373I 0.26 TCGA-VQ-A8P2-01 8 54669122 54669122 C A ATP6V1H Missense_Mutation p.G424C 0.21 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 8 54754231 54754231 C A ATP6V1H Missense_Mutation p.R7L 0.36 deleterious_low_confidence(0.02) possibly_damaging(0.554) TCGA-VQ-A8P2-01 8 55055290 55055290 C T MRPL15 Missense_Mutation p.A166V 0.16 deleterious(0.02) benign(0.36) TCGA-VQ-A8P2-01 8 55534809 55534809 G A RP1 Missense_Mutation p.V250M 0.22 deleterious(0.02) benign(0.218) TCGA-VQ-A8P2-01 8 55541607 55541607 G A RP1 Missense_Mutation p.G1722D 0.36 tolerated(0.57) benign(0.014) TCGA-VQ-A8P2-01 8 55542120 55542120 G A RP1 Missense_Mutation p.G1893D 0.07 tolerated(0.38) benign(0.014) TCGA-VQ-A8P2-01 8 55542461 55542462 - A RP1 Frame_Shift_Ins p.R2009Kfs*3 0.14 TCGA-VQ-A8P2-01 8 56015034 56015034 C T XKR4 5'UTR 0.09 TCGA-VQ-A8P2-01 8 56015483 56015483 C T XKR4 Silent p.F145F 0.20 TCGA-VQ-A8P2-01 8 56675197 56675197 G A TMEM68 Missense_Mutation p.H108Y 0.26 deleterious(0.04) possibly_damaging(0.897) TCGA-VQ-A8P2-01 8 56711489 56711489 C T TGS1 Missense_Mutation p.T520I 0.15 deleterious(0) benign(0.035) TCGA-VQ-A8P2-01 8 56737308 56737308 T C TGS1 3'UTR 0.21 TCGA-VQ-A8P2-01 8 56863054 56863054 A - LYN Frame_Shift_Del p.E110Kfs*15 0.29 TCGA-VQ-A8P2-01 8 57213922 57213922 G A SDR16C5 3'UTR 0.19 TCGA-VQ-A8P2-01 8 57354098 57354098 C A PENK Missense_Mutation p.E179D 0.07 tolerated(1) benign(0.001) TCGA-VQ-A8P2-01 8 57354130 57354130 G A PENK Missense_Mutation p.R169C 0.34 tolerated(0.07) benign(0.302) TCGA-VQ-A8P2-01 8 57890650 57890650 G A IMPAD1 Missense_Mutation p.P202L 0.25 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 8 59352305 59352305 G A UBXN2B Missense_Mutation p.S216N 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A8P2-01 8 59404920 59404920 C T CYP7A1 Missense_Mutation p.D403N 0.09 tolerated(0.21) benign(0.089) TCGA-VQ-A8P2-01 8 59488555 59488555 C T SDCBP Missense_Mutation p.R113C 0.09 deleterious(0) benign(0.118) TCGA-VQ-A8P2-01 8 59490710 59490710 C T SDCBP Missense_Mutation p.A174V 0.19 tolerated(0.58) benign(0.03) TCGA-VQ-A8P2-01 8 59492193 59492193 G A SDCBP Missense_Mutation p.R197Q 0.23 deleterious(0.03) benign(0.099) TCGA-VQ-A8P2-01 8 59494283 59494283 C T SDCBP Missense_Mutation p.T294I 0.28 deleterious(0.02) benign(0.005) TCGA-VQ-A8P2-01 8 59502068 59502068 A G NSMAF Silent p.S749S 0.27 TCGA-VQ-A8P2-01 8 59510073 59510073 C T NSMAF Silent p.T586T 0.25 TCGA-VQ-A8P2-01 8 59515829 59515829 C T NSMAF Missense_Mutation p.D360N 0.06 deleterious(0.02) benign(0.345) TCGA-VQ-A8P2-01 8 59522163 59522163 C T NSMAF Silent p.P260P 0.34 TCGA-VQ-A8P2-01 8 61655258 61655258 G T CHD7 Nonsense_Mutation p.E423* 0.22 TCGA-VQ-A8P2-01 8 61655327 61655327 G A CHD7 Missense_Mutation p.G446R 0.31 probably_damaging(0.956) TCGA-VQ-A8P2-01 8 61736638 61736638 C T CHD7 Intron 0.27 TCGA-VQ-A8P2-01 8 61742917 61742917 T C CHD7 Silent p.L1187L 0.31 TCGA-VQ-A8P2-01 8 623864 623865 - T ERICH1 Frame_Shift_Ins p.R163Kfs*10 0.28 TCGA-VQ-A8P2-01 8 62416020 62416020 G A ASPH Silent p.H725H 0.17 TCGA-VQ-A8P2-01 8 6299660 6299660 G A MCPH1 Missense_Mutation p.R218H 0.23 tolerated(1) benign(0) TCGA-VQ-A8P2-01 8 6302005 6302005 C T MCPH1 Silent p.S254S 0.25 TCGA-VQ-A8P2-01 8 6302343 6302343 C T MCPH1 Missense_Mutation p.P367L 0.13 tolerated(0.11) benign(0.008) TCGA-VQ-A8P2-01 8 6366512 6366512 C A ANGPT2 Missense_Mutation p.S424I 0.23 deleterious(0) probably_damaging(0.939) TCGA-VQ-A8P2-01 8 6389934 6389934 C T ANGPT2 Silent p.T121T 0.33 TCGA-VQ-A8P2-01 8 63973896 63973896 G A TTPA Missense_Mutation p.S251F 0.09 tolerated(0.07) possibly_damaging(0.632) TCGA-VQ-A8P2-01 8 63985569 63985569 G T TTPA Missense_Mutation p.L95I 0.09 tolerated(0.06) probably_damaging(0.99) TCGA-VQ-A8P2-01 8 64099642 64099642 G A YTHDF3 Missense_Mutation p.R357H 0.43 deleterious(0.05) possibly_damaging(0.715) TCGA-VQ-A8P2-01 8 65517326 65517326 G A CYP7B1 Silent p.T382T 0.33 TCGA-VQ-A8P2-01 8 6682720 6682720 A C XKR5 RNA 0.16 TCGA-VQ-A8P2-01 8 67547230 67547230 C A VCPIP1 Missense_Mutation p.D1059Y 0.24 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-VQ-A8P2-01 8 67576666 67576666 C T VCPIP1 Missense_Mutation p.G843D 0.20 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 8 68071331 68071331 C T CSPP1 Missense_Mutation p.H828Y 0.23 tolerated(0.22) probably_damaging(0.997) TCGA-VQ-A8P2-01 8 68111326 68111326 G T ARFGEF1 Missense_Mutation p.A1798D 0.20 tolerated(0.42) possibly_damaging(0.52) TCGA-VQ-A8P2-01 8 68113950 68113950 G A ARFGEF1 Intron 0.27 TCGA-VQ-A8P2-01 8 68115431 68115431 C T ARFGEF1 Missense_Mutation p.R1672H 0.20 tolerated(0.13) possibly_damaging(0.629) TCGA-VQ-A8P2-01 8 69033194 69033194 A G PREX2 Missense_Mutation p.K1212E 0.10 tolerated(0.22) benign(0.081) TCGA-VQ-A8P2-01 8 69058478 69058478 G T PREX2 Silent p.R1374R 0.28 TCGA-VQ-A8P2-01 8 69104760 69104760 G A PREX2 Missense_Mutation p.R1535Q 0.07 deleterious(0) benign(0.434) TCGA-VQ-A8P2-01 8 69129888 69129888 C T PREX2 Silent p.L1548L 0.26 TCGA-VQ-A8P2-01 8 70476307 70476307 C T SULF1 Missense_Mutation p.R33W 0.23 deleterious(0) probably_damaging(0.932) TCGA-VQ-A8P2-01 8 70498608 70498608 C T SULF1 Silent p.Y143Y 0.27 TCGA-VQ-A8P2-01 8 70594445 70594445 C T SLCO5A1 Missense_Mutation p.V586I 0.23 tolerated(0.84) benign(0.005) TCGA-VQ-A8P2-01 8 71068760 71068760 C T NCOA2 Missense_Mutation p.D614N 0.32 tolerated(0.14) benign(0.003) TCGA-VQ-A8P2-01 8 71075056 71075056 C A NCOA2 Missense_Mutation p.R289I 0.28 deleterious(0) probably_damaging(0.986) TCGA-VQ-A8P2-01 8 71510175 71510175 C T TRAM1 Silent p.A127A 0.18 TCGA-VQ-A8P2-01 8 71570049 71570049 G C LACTB2 Missense_Mutation p.Q119E 0.21 tolerated(1) benign(0.007) TCGA-VQ-A8P2-01 8 72754843 72754843 C T MSC 3'UTR 0.07 TCGA-VQ-A8P2-01 8 72951237 72951237 T C TRPA1 Missense_Mutation p.M720V 0.25 tolerated(0.74) benign(0.001) TCGA-VQ-A8P2-01 8 72967687 72967688 - T TRPA1 Frame_Shift_Ins p.G505Rfs*7 0.24 TCGA-VQ-A8P2-01 8 72967983 72967983 G A TRPA1 Silent p.G434G 0.21 TCGA-VQ-A8P2-01 8 74722839 74722839 G T UBE2W Missense_Mutation p.P119H 0.30 deleterious(0.04) probably_damaging(0.945) TCGA-VQ-A8P2-01 8 75156959 75156959 G A JPH1 Silent p.G570G 0.07 TCGA-VQ-A8P2-01 8 75157148 75157148 C A JPH1 Silent p.T507T 0.28 TCGA-VQ-A8P2-01 8 75171694 75171694 G A JPH1 Missense_Mutation p.A395V 0.23 deleterious(0.01) probably_damaging(0.949) TCGA-VQ-A8P2-01 8 75227623 75227623 C T JPH1 Silent p.A204A 0.17 TCGA-VQ-A8P2-01 8 77616327 77616327 G A ZFHX4 Missense_Mutation p.E2K 0.24 benign(0.003) TCGA-VQ-A8P2-01 8 77618687 77618687 C T ZFHX4 Silent p.S788S 0.09 TCGA-VQ-A8P2-01 8 77690441 77690441 C T ZFHX4 Intron 0.30 TCGA-VQ-A8P2-01 8 77768373 77768373 C T ZFHX4 Silent p.D3072D 0.29 TCGA-VQ-A8P2-01 8 79629594 79629594 G A ZC2HC1A Missense_Mutation p.G282S 0.29 tolerated(0.24) benign(0.184) TCGA-VQ-A8P2-01 8 81889022 81889022 G T PAG1 Silent p.P352P 0.21 TCGA-VQ-A8P2-01 8 8234245 8234245 C T SGK223 Silent p.P558P 0.27 TCGA-VQ-A8P2-01 8 8239055 8239055 C T SGK223 Missense_Mutation p.R68H 0.34 probably_damaging(0.991) TCGA-VQ-A8P2-01 8 82586164 82586164 G A IMPA1 Silent p.Y182Y 0.25 TCGA-VQ-A8P2-01 8 82615067 82615067 C T ZFAND1 Missense_Mutation p.A224T 0.24 tolerated(0.14) benign(0.003) TCGA-VQ-A8P2-01 8 82752203 82752203 G A SNX16 Missense_Mutation p.P7S 0.24 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 8 86027609 86027609 G T LRRCC1 Splice_Site p.X241_splice 0.23 TCGA-VQ-A8P2-01 8 86041456 86041456 G A LRRCC1 Missense_Mutation p.E490K 0.23 tolerated(0.15) benign(0.071) TCGA-VQ-A8P2-01 8 86047167 86047167 C A LRRCC1 Missense_Mutation p.S685Y 0.25 deleterious(0) probably_damaging(0.99) TCGA-VQ-A8P2-01 8 87111268 87111268 C T ATP6V0D2 Nonsense_Mutation p.R21* 0.30 TCGA-VQ-A8P2-01 8 87165086 87165086 C T ATP6V0D2 Silent p.Y311Y 0.31 TCGA-VQ-A8P2-01 8 87450820 87450820 G A WWP1 Missense_Mutation p.A586T 0.38 tolerated(0.25) possibly_damaging(0.679) TCGA-VQ-A8P2-01 8 87474072 87474072 C T WWP1 Missense_Mutation p.T889I 0.32 deleterious(0) possibly_damaging(0.49) TCGA-VQ-A8P2-01 8 8748228 8748228 G A MFHAS1 Missense_Mutation p.R781W 0.28 deleterious(0) possibly_damaging(0.798) TCGA-VQ-A8P2-01 8 8749544 8749544 G A MFHAS1 Missense_Mutation p.T342I 0.35 tolerated(0.14) benign(0.081) TCGA-VQ-A8P2-01 8 87616387 87616387 A C CNGB3 Missense_Mutation p.L572R 0.28 deleterious(0) probably_damaging(0.994) TCGA-VQ-A8P2-01 8 88249237 88249237 C A CNBD1 Nonsense_Mutation p.S223* 0.36 TCGA-VQ-A8P2-01 8 88885254 88885254 C T DCAF4L2 Missense_Mutation p.A316T 0.20 tolerated(0.1) probably_damaging(0.986) TCGA-VQ-A8P2-01 8 89058908 89058908 T C MMP16 Missense_Mutation p.H493R 0.09 deleterious(0.04) benign(0.202) TCGA-VQ-A8P2-01 8 89198762 89198762 C T MMP16 Missense_Mutation p.R116H 0.28 deleterious(0) probably_damaging(0.948) TCGA-VQ-A8P2-01 8 89339383 89339383 G A MMP16 Missense_Mutation p.S18L 0.19 tolerated_low_confidence(0.39) benign(0) TCGA-VQ-A8P2-01 8 89339474 89339474 G A MMP16 5'UTR 0.29 TCGA-VQ-A8P2-01 8 90937048 90937048 C T OSGIN2 Missense_Mutation p.A313V 0.25 tolerated(0.25) benign(0.012) TCGA-VQ-A8P2-01 8 90993071 90993071 C T NBN Missense_Mutation p.G124E 0.08 tolerated(0.2) benign(0.263) TCGA-VQ-A8P2-01 8 91057170 91057170 G A DECR1 Missense_Mutation p.A278T 0.06 deleterious(0.01) probably_damaging(0.936) TCGA-VQ-A8P2-01 8 92406186 92406186 G A SLC26A7 Silent p.T618T 0.23 TCGA-VQ-A8P2-01 8 92407485 92407485 G A SLC26A7 3'Flank 0.43 TCGA-VQ-A8P2-01 8 9413916 9413916 C T TNKS Missense_Mutation p.A156V 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.499) TCGA-VQ-A8P2-01 8 94745970 94745970 C T RBM12B Missense_Mutation p.R890H 0.23 tolerated(0.06) probably_damaging(0.976) TCGA-VQ-A8P2-01 8 95158307 95158307 C T CDH17 Silent p.T672T 0.15 TCGA-VQ-A8P2-01 8 95262720 95262720 G A GEM Nonsense_Mutation p.R237* 0.27 TCGA-VQ-A8P2-01 8 95470611 95470611 G A RAD54B Silent p.C63C 0.20 TCGA-VQ-A8P2-01 8 95507983 95507983 G T KIAA1429 Missense_Mutation p.S1507Y 0.24 deleterious(0.01) possibly_damaging(0.804) TCGA-VQ-A8P2-01 8 95524312 95524312 G A KIAA1429 Silent p.I919I 0.12 TCGA-VQ-A8P2-01 8 95539135 95539135 C T KIAA1429 Missense_Mutation p.R446H 0.12 tolerated(0.08) possibly_damaging(0.586) TCGA-VQ-A8P2-01 8 95550501 95550501 C T KIAA1429 Missense_Mutation p.D85N 0.27 tolerated(0.28) benign(0.08) TCGA-VQ-A8P2-01 8 95777453 95777453 G T DPY19L4 Nonsense_Mutation p.G305* 0.24 TCGA-VQ-A8P2-01 8 96166787 96166787 G A PLEKHF2 Missense_Mutation p.R172H 0.24 deleterious(0) probably_damaging(0.994) TCGA-VQ-A8P2-01 8 9619099 9619099 G A TNKS Missense_Mutation p.R1076H 0.21 deleterious(0) possibly_damaging(0.841) TCGA-VQ-A8P2-01 8 9622228 9622228 G A TNKS Missense_Mutation p.M1125I 0.26 deleterious(0.03) benign(0.027) TCGA-VQ-A8P2-01 8 9627720 9627720 C T TNKS Missense_Mutation p.P1282L 0.15 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 8 9627723 9627723 G A TNKS Missense_Mutation p.S1283N 0.17 deleterious(0.03) possibly_damaging(0.671) TCGA-VQ-A8P2-01 8 97172741 97172741 C T GDF6 Silent p.A60A 0.30 TCGA-VQ-A8P2-01 8 97172790 97172790 C T GDF6 Missense_Mutation p.R44Q 0.25 deleterious(0.02) benign(0.123) TCGA-VQ-A8P2-01 8 97251780 97251780 A G MTERFD1 Missense_Mutation p.F398S 0.23 deleterious(0) probably_damaging(0.984) TCGA-VQ-A8P2-01 8 98289102 98289102 C T TSPYL5 Missense_Mutation p.R324H 0.30 tolerated(0.07) benign(0.024) TCGA-VQ-A8P2-01 8 98289745 98289745 C T TSPYL5 Missense_Mutation p.A110T 0.27 tolerated(0.73) benign(0.001) TCGA-VQ-A8P2-01 8 98900344 98900344 G A MATN2 Missense_Mutation p.A6T 0.39 tolerated_low_confidence(0.21) benign(0.005) TCGA-VQ-A8P2-01 8 98943588 98943588 G A MATN2 Missense_Mutation p.A184T 0.20 deleterious(0.02) probably_damaging(0.98) TCGA-VQ-A8P2-01 8 98973704 98973704 G A MATN2 Missense_Mutation p.V302I 0.30 tolerated(0.36) benign(0.09) TCGA-VQ-A8P2-01 8 99019433 99019433 C T MATN2 Silent p.N476N 0.19 TCGA-VQ-A8P2-01 8 99040013 99040013 C A MATN2 Missense_Mutation p.A771D 0.18 deleterious(0.01) probably_damaging(0.996) TCGA-VQ-A8P2-01 8 99129282 99129282 G A HRSP12 Missense_Mutation p.P15S 0.30 deleterious(0.01) benign(0.402) TCGA-VQ-A8P2-01 8 99139936 99139936 G T POP1 Nonsense_Mutation p.G86* 0.17 TCGA-VQ-A8P2-01 8 99140643 99140643 G A POP1 Missense_Mutation p.A121T 0.28 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 8 99146763 99146763 G A POP1 Missense_Mutation p.R296Q 0.25 tolerated(0.12) possibly_damaging(0.621) TCGA-VQ-A8P2-01 8 99148760 99148760 A C POP1 Missense_Mutation p.K354N 0.32 tolerated(0.4) benign(0.104) TCGA-VQ-A8P2-01 8 99761546 99761546 G A STK3 Silent p.G131G 0.22 TCGA-VQ-A8P2-01 9 100070307 100070307 C T CCDC180 Nonsense_Mutation p.R32* 0.10 TCGA-VQ-A8P2-01 9 100071773 100071773 A G CCDC180 Missense_Mutation p.I93M 0.22 tolerated(0.14) benign(0.108) TCGA-VQ-A8P2-01 9 100088877 100088877 G A CCDC180 Silent p.R573R 0.38 TCGA-VQ-A8P2-01 9 100245265 100245265 T C TDRD7 Silent p.F849F 0.36 TCGA-VQ-A8P2-01 9 100423346 100423346 C T NCBP1 Silent p.D532D 0.07 TCGA-VQ-A8P2-01 9 100616670 100616670 G T FOXE1 Silent p.P158P 0.21 TCGA-VQ-A8P2-01 9 100678463 100678463 T C C9orf156 Silent p.E78E 0.28 TCGA-VQ-A8P2-01 9 100823235 100823235 G A NANS Missense_Mutation p.A102T 0.12 deleterious(0.01) possibly_damaging(0.871) TCGA-VQ-A8P2-01 9 100849585 100849585 A G TRIM14 3'UTR 0.05 TCGA-VQ-A8P2-01 9 100963773 100963773 G A TBC1D2 Silent p.Y815Y 0.32 TCGA-VQ-A8P2-01 9 101125069 101125069 G A GABBR2 Silent p.I607I 0.23 TCGA-VQ-A8P2-01 9 101148010 101148010 A C GABBR2 Missense_Mutation p.L525R 0.27 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 9 101304161 101304161 G A GABBR2 Silent p.F208F 0.11 TCGA-VQ-A8P2-01 9 101552585 101552585 G T ANKS6 Silent p.A221A 0.40 TCGA-VQ-A8P2-01 9 101778331 101778331 C A COL15A1 Missense_Mutation p.S526Y 0.24 tolerated_low_confidence(0.33) benign(0.102) TCGA-VQ-A8P2-01 9 101894917 101894917 G A TGFBR1 Missense_Mutation p.R157Q 0.14 tolerated(0.32) benign(0.289) TCGA-VQ-A8P2-01 9 101984641 101984641 C T SEC61B 5'UTR 0.32 TCGA-VQ-A8P2-01 9 101992829 101992829 A C SEC61B 3'UTR 0.50 TCGA-VQ-A8P2-01 9 102595562 102595562 A G NR4A3 Splice_Site p.X372_splice 0.10 TCGA-VQ-A8P2-01 9 102677512 102677512 T - STX17 5'UTR 0.29 TCGA-VQ-A8P2-01 9 102730857 102730857 G T STX17 Missense_Mutation p.G271C 0.08 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 9 102814809 102814809 C T ERP44 Missense_Mutation p.R59H 0.22 deleterious(0) possibly_damaging(0.534) TCGA-VQ-A8P2-01 9 103009029 103009029 G A INVS Silent p.S346S 0.08 TCGA-VQ-A8P2-01 9 103092239 103092239 C A TEX10 Missense_Mutation p.R488M 0.38 deleterious(0) probably_damaging(0.971) TCGA-VQ-A8P2-01 9 104133522 104133522 G A BAAT Silent p.F55F 0.42 TCGA-VQ-A8P2-01 9 104187285 104187285 G A ALDOB Missense_Mutation p.A280V 0.34 deleterious(0.03) probably_damaging(0.996) TCGA-VQ-A8P2-01 9 104193097 104193097 C T ALDOB Missense_Mutation p.A25T 0.31 tolerated(0.31) benign(0.17) TCGA-VQ-A8P2-01 9 104239329 104239329 G A TMEM246 Missense_Mutation p.R16W 0.33 tolerated(0.06) benign(0.266) TCGA-VQ-A8P2-01 9 104319714 104319714 G A RNF20 Missense_Mutation p.E740K 0.10 deleterious(0) probably_damaging(0.975) TCGA-VQ-A8P2-01 9 105767112 105767112 G A CYLC2 Missense_Mutation p.E106K 0.43 tolerated(1) benign(0) TCGA-VQ-A8P2-01 9 107521635 107521635 C T NIPSNAP3A 3'UTR 0.22 TCGA-VQ-A8P2-01 9 107555095 107555095 T A ABCA1 Missense_Mutation p.D1910V 0.32 deleterious(0) probably_damaging(0.924) TCGA-VQ-A8P2-01 9 107564406 107564406 G A ABCA1 Nonsense_Mutation p.Q1543* 0.17 TCGA-VQ-A8P2-01 9 107618127 107618127 G T ABCA1 Intron 0.47 TCGA-VQ-A8P2-01 9 108151346 108151346 G A SLC44A1 3'UTR 0.38 TCGA-VQ-A8P2-01 9 108363429 108363429 G A FKTN Missense_Mutation p.A57T 0.13 tolerated(0.91) benign(0.001) TCGA-VQ-A8P2-01 9 108377632 108377632 C T FKTN Missense_Mutation p.A285V 0.44 tolerated(0.13) benign(0.013) TCGA-VQ-A8P2-01 9 108484883 108484883 G A TMEM38B Missense_Mutation p.E175K 0.37 tolerated(0.07) benign(0.364) TCGA-VQ-A8P2-01 9 109686547 109686547 G T ZNF462 Missense_Mutation p.R118S 0.40 possibly_damaging(0.537) TCGA-VQ-A8P2-01 9 109687805 109687805 C T ZNF462 Nonsense_Mutation p.Q538* 0.22 TCGA-VQ-A8P2-01 9 109689563 109689563 C T ZNF462 Missense_Mutation p.R1124W 0.11 probably_damaging(0.993) TCGA-VQ-A8P2-01 9 111618072 111618072 G T ACTL7B Missense_Mutation p.H47N 0.40 tolerated(0.18) benign(0.084) TCGA-VQ-A8P2-01 9 111798579 111798579 G A TMEM245 Missense_Mutation p.T769I 0.33 tolerated(0.15) benign(0.025) TCGA-VQ-A8P2-01 9 111819579 111819579 G C TMEM245 Missense_Mutation p.H582Q 0.40 tolerated(0.08) benign(0.016) TCGA-VQ-A8P2-01 9 112042114 112042114 C T EPB41L4B Missense_Mutation p.D132N 0.14 deleterious(0) benign(0.151) TCGA-VQ-A8P2-01 9 112686057 112686057 G A PALM2-AKAP2 Silent p.Q100Q 0.42 TCGA-VQ-A8P2-01 9 112705684 112705684 T A PALM2 Nonsense_Mutation p.C405* 0.33 TCGA-VQ-A8P2-01 9 112705848 112705848 T - PALM2 3'Flank 0.29 TCGA-VQ-A8P2-01 9 112900247 112900247 C T PALM2-AKAP2 Missense_Mutation p.A808V 0.42 tolerated(0.06) probably_damaging(0.999) TCGA-VQ-A8P2-01 9 112900392 112900392 G T PALM2-AKAP2 Missense_Mutation p.E856D 0.40 deleterious(0.03) possibly_damaging(0.543) TCGA-VQ-A8P2-01 9 113100054 113100054 G A TXNDC8 Missense_Mutation p.T8M 0.47 tolerated(0.34) benign(0.004) TCGA-VQ-A8P2-01 9 113168517 113168517 G T SVEP1 Silent p.S3121S 0.07 TCGA-VQ-A8P2-01 9 113194879 113194879 C T SVEP1 Missense_Mutation p.G1699D 0.24 probably_damaging(1) TCGA-VQ-A8P2-01 9 113208177 113208177 G T SVEP1 Missense_Mutation p.P1468Q 0.30 probably_damaging(0.997) TCGA-VQ-A8P2-01 9 113449417 113449417 G A MUSK Missense_Mutation p.S76N 0.42 tolerated_low_confidence(0.18) benign(0.219) TCGA-VQ-A8P2-01 9 113637776 113637776 G T LPAR1 Silent p.G340G 0.12 TCGA-VQ-A8P2-01 9 114089954 114089954 C T OR2K2 Missense_Mutation p.A254T 0.33 deleterious(0.02) probably_damaging(0.913) TCGA-VQ-A8P2-01 9 114124281 114124281 G T KIAA0368 3'UTR 0.12 TCGA-VQ-A8P2-01 9 114135621 114135621 C T KIAA0368 Missense_Mutation p.A1593T 0.32 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 9 114204600 114204600 C T KIAA0368 Silent p.Q303Q 0.65 TCGA-VQ-A8P2-01 9 114475451 114475451 A G C9orf84 Missense_Mutation p.V742A 0.25 deleterious(0.02) probably_damaging(0.941) TCGA-VQ-A8P2-01 9 114990710 114990710 T G PTBP3 Missense_Mutation p.K400T 0.36 deleterious(0.01) possibly_damaging(0.703) TCGA-VQ-A8P2-01 9 115013281 115013281 C A PTBP3 Missense_Mutation p.D278Y 0.25 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 9 115407957 115407957 C A KIAA1958 Missense_Mutation p.P400H 0.42 deleterious(0.01) benign(0.354) TCGA-VQ-A8P2-01 9 115649687 115649687 G A SLC46A2 Missense_Mutation p.A379V 0.40 deleterious(0.04) benign(0.052) TCGA-VQ-A8P2-01 9 115760443 115760443 T G ZNF883 RNA 0.11 TCGA-VQ-A8P2-01 9 115969495 115969495 C T FKBP15 Missense_Mutation p.R84Q 0.35 deleterious(0.02) benign(0.067) TCGA-VQ-A8P2-01 9 116018478 116018478 C T SLC31A1 Missense_Mutation p.T17I 0.58 tolerated(0.08) benign(0.404) TCGA-VQ-A8P2-01 9 116029555 116029555 A G CDC26 Silent p.S82S 0.21 TCGA-VQ-A8P2-01 9 116132217 116132217 G A BSPRY Missense_Mutation p.R335H 0.39 tolerated(0.13) benign(0.117) TCGA-VQ-A8P2-01 9 116171084 116171084 G A POLE3 3'UTR 0.32 TCGA-VQ-A8P2-01 9 116188001 116188001 C T C9orf43 Missense_Mutation p.R341C 0.28 deleterious(0.01) benign(0.258) TCGA-VQ-A8P2-01 9 116246504 116246506 CTT - RGS3 In_Frame_Del p.F207del 0.55 TCGA-VQ-A8P2-01 9 116854167 116854167 G A KIF12 Missense_Mutation p.P506S 0.36 tolerated_low_confidence(0.12) benign(0.027) TCGA-VQ-A8P2-01 9 116854656 116854656 A G KIF12 Silent p.P453P 0.39 TCGA-VQ-A8P2-01 9 116930071 116930071 G A COL27A1 Missense_Mutation p.R79Q 0.34 unknown(0) TCGA-VQ-A8P2-01 9 117005833 117005833 G A COL27A1 Missense_Mutation p.G976D 0.46 unknown(0) TCGA-VQ-A8P2-01 9 117085991 117085991 T C ORM1 Missense_Mutation p.Y55H 0.38 deleterious(0) probably_damaging(0.913) TCGA-VQ-A8P2-01 9 117092751 117092751 G A ORM2 Missense_Mutation p.R51Q 0.43 deleterious(0.04) benign(0.124) TCGA-VQ-A8P2-01 9 117092830 117092830 G A ORM2 Silent p.T77T 0.38 TCGA-VQ-A8P2-01 9 117808703 117808703 G T TNC Missense_Mutation p.A1704D 0.33 tolerated(0.11) possibly_damaging(0.48) TCGA-VQ-A8P2-01 9 117825288 117825288 G A TNC Missense_Mutation p.P1314L 0.52 tolerated(0.14) benign(0.009) TCGA-VQ-A8P2-01 9 117844969 117844969 A G TNC Splice_Site p.X749_splice 0.60 TCGA-VQ-A8P2-01 9 117849133 117849133 G A TNC Nonsense_Mutation p.R293* 0.38 TCGA-VQ-A8P2-01 9 119106938 119106938 G A PAPPA Missense_Mutation p.R1243Q 0.43 tolerated(0.89) benign(0) TCGA-VQ-A8P2-01 9 119115091 119115091 C T PAPPA Silent p.L1357L 0.12 TCGA-VQ-A8P2-01 9 119738430 119738430 G T ASTN2 Missense_Mutation p.L521M 0.33 deleterious_low_confidence(0) unknown(0) TCGA-VQ-A8P2-01 9 120476976 120476976 A G TLR4 3'UTR 0.50 TCGA-VQ-A8P2-01 9 121930284 121930284 T G BRINP1 Missense_Mutation p.K455T 0.41 tolerated(0.7) benign(0.102) TCGA-VQ-A8P2-01 9 123586806 123586806 G T PSMD5 Silent p.S324S 0.45 TCGA-VQ-A8P2-01 9 123636849 123636849 G A PHF19 Silent p.L57L 0.32 TCGA-VQ-A8P2-01 9 123686064 123686064 G A TRAF1 Silent p.G49G 0.15 TCGA-VQ-A8P2-01 9 123920049 123920049 C G CNTRL Missense_Mutation p.Q1510E 0.33 benign(0.053) TCGA-VQ-A8P2-01 9 124091265 124091265 C T GSN Missense_Mutation p.A671V 0.29 tolerated(0.1) probably_damaging(0.999) TCGA-VQ-A8P2-01 9 125143727 125143727 G T PTGS1 Missense_Mutation p.G192C 0.38 deleterious(0) probably_damaging(0.984) TCGA-VQ-A8P2-01 9 125145787 125145787 G T PTGS1 Splice_Site p.X255_splice 0.39 TCGA-VQ-A8P2-01 9 125437587 125437588 - T OR1L3 Frame_Shift_Ins p.L63Pfs*8 0.21 TCGA-VQ-A8P2-01 9 125486888 125486888 T G OR1L4 Missense_Mutation p.V207G 0.29 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8P2-01 9 125551448 125551448 C T OR5C1 Silent p.S79S 0.48 TCGA-VQ-A8P2-01 9 125582326 125582326 C A PDCL 3'UTR 0.35 TCGA-VQ-A8P2-01 9 125582601 125582601 G A PDCL Silent p.G223G 0.25 TCGA-VQ-A8P2-01 9 125618010 125618010 C T RC3H2 Splice_Site p.X867_splice 0.43 TCGA-VQ-A8P2-01 9 125627737 125627737 G A RC3H2 Missense_Mutation p.R509C 0.41 deleterious(0.02) probably_damaging(0.982) TCGA-VQ-A8P2-01 9 125863927 125863927 T - RABGAP1 Frame_Shift_Del p.L992* 0.37 TCGA-VQ-A8P2-01 9 126125371 126125371 G A CRB2 Missense_Mutation p.D108N 0.42 tolerated(0.09) unknown(0) TCGA-VQ-A8P2-01 9 126128641 126128641 G A CRB2 Nonsense_Mutation p.W250* 0.29 TCGA-VQ-A8P2-01 9 126414377 126414377 G T DENND1A Missense_Mutation p.A178D 0.42 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 9 126777590 126777590 G A LHX2 Silent p.A171A 0.40 TCGA-VQ-A8P2-01 9 126783459 126783459 G A LHX2 Missense_Mutation p.R270H 0.19 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 9 126794900 126794900 A G LHX2 Missense_Mutation p.T379A 0.26 deleterious(0.02) probably_damaging(0.97) TCGA-VQ-A8P2-01 9 126794944 126794944 G A LHX2 Silent p.E393E 0.09 TCGA-VQ-A8P2-01 9 127113224 127113224 T C NEK6 Nonstop_Mutation p.*348Rext*17 0.41 TCGA-VQ-A8P2-01 9 127549343 127549343 G A OLFML2A Silent p.A60A 0.46 TCGA-VQ-A8P2-01 9 127549356 127549356 C T OLFML2A Missense_Mutation p.R65C 0.44 deleterious(0) probably_damaging(0.976) TCGA-VQ-A8P2-01 9 127616604 127616604 G A WDR38 Missense_Mutation p.G64S 0.52 deleterious(0.03) probably_damaging(0.964) TCGA-VQ-A8P2-01 9 127639294 127639294 G T ARPC5L 3'UTR 0.50 TCGA-VQ-A8P2-01 9 127670678 127670678 G A GOLGA1 Missense_Mutation p.A348V 0.44 deleterious(0.02) benign(0.394) TCGA-VQ-A8P2-01 9 127975683 127975683 C T RABEPK Silent p.G82G 0.36 TCGA-VQ-A8P2-01 9 128001310 128001310 C T HSPA5 Silent p.Q302Q 0.36 TCGA-VQ-A8P2-01 9 128064582 128064582 G A GAPVD1 Missense_Mutation p.R169Q 0.29 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8P2-01 9 128064885 128064885 A G GAPVD1 Missense_Mutation p.K270R 0.48 tolerated(0.39) probably_damaging(0.996) TCGA-VQ-A8P2-01 9 128678140 128678140 A G PBX3 Silent p.S150S 0.51 TCGA-VQ-A8P2-01 9 129796780 129796780 G T RALGPS1 Missense_Mutation p.R96L 0.49 deleterious(0) possibly_damaging(0.591) TCGA-VQ-A8P2-01 9 130155473 130155473 C T GARNL3 Silent p.S994S 0.25 TCGA-VQ-A8P2-01 9 130206974 130206974 C A ZNF79 Missense_Mutation p.P332H 0.36 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 9 130504175 130504175 C T SH2D3C Silent p.E660E 0.17 TCGA-VQ-A8P2-01 9 130540911 130540911 G A SH2D3C 5'UTR 0.36 TCGA-VQ-A8P2-01 9 130575702 130575702 G A FPGS Missense_Mutation p.S528N 0.09 tolerated(0.07) benign(0.192) TCGA-VQ-A8P2-01 9 130674805 130674805 C T ST6GALNAC4 Missense_Mutation p.R118H 0.49 probably_damaging(0.996) TCGA-VQ-A8P2-01 9 131186473 131186473 G A CERCAM Silent p.G161G 0.35 TCGA-VQ-A8P2-01 9 13119520 13119520 G A MPDZ Missense_Mutation p.A1787V 0.43 tolerated(0.1) benign(0.111) TCGA-VQ-A8P2-01 9 131223343 131223343 G A ODF2 Nonsense_Mutation p.W82* 0.20 TCGA-VQ-A8P2-01 9 131515850 131515850 G A ZER1 Silent p.C113C 0.53 TCGA-VQ-A8P2-01 9 131598129 131598129 G A CCBL1 Missense_Mutation p.P262S 0.17 deleterious(0.04) probably_damaging(0.929) TCGA-VQ-A8P2-01 9 131678417 131678417 C T LRRC8A Missense_Mutation p.R734W 0.28 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8P2-01 9 131768778 131768778 T C NUP188 Intron 0.32 TCGA-VQ-A8P2-01 9 131810717 131810717 C T FAM73B Missense_Mutation p.R107W 0.27 deleterious(0.01) probably_damaging(0.984) TCGA-VQ-A8P2-01 9 13224435 13224435 G A MPDZ Missense_Mutation p.P111S 0.46 tolerated(0.17) benign(0.007) TCGA-VQ-A8P2-01 9 132662308 132662308 G A FNBP1 Silent p.D541D 0.39 TCGA-VQ-A8P2-01 9 133501834 133501834 C T FUBP3 Silent p.G353G 0.36 TCGA-VQ-A8P2-01 9 134008012 134008012 T C NUP214 Silent p.C231C 0.22 TCGA-VQ-A8P2-01 9 134021654 134021654 C T NUP214 Silent p.S636S 0.07 TCGA-VQ-A8P2-01 9 134072809 134072809 C A NUP214 Missense_Mutation p.L1310M 0.08 benign(0.335) TCGA-VQ-A8P2-01 9 134073893 134073893 C T NUP214 Missense_Mutation p.T1671M 0.16 benign(0.011) TCGA-VQ-A8P2-01 9 134183396 134183396 G A PPAPDC3 Missense_Mutation p.D180N 0.42 tolerated(0.09) benign(0.335) TCGA-VQ-A8P2-01 9 134183450 134183450 G A PPAPDC3 Missense_Mutation p.A198T 0.23 tolerated(0.1) benign(0.06) TCGA-VQ-A8P2-01 9 134322521 134322521 C A PRRC2B Missense_Mutation p.S302Y 0.37 deleterious(0.02) possibly_damaging(0.886) TCGA-VQ-A8P2-01 9 134351309 134351309 G A PRRC2B Missense_Mutation p.A1265T 0.50 tolerated(0.39) benign(0.002) TCGA-VQ-A8P2-01 9 134385764 134385764 G A POMT1 Missense_Mutation p.D295N 0.09 tolerated(0.06) probably_damaging(0.999) TCGA-VQ-A8P2-01 9 134405911 134405911 G A UCK1 Missense_Mutation p.A82V 0.23 tolerated(0.19) benign(0.006) TCGA-VQ-A8P2-01 9 135073587 135073587 G A NTNG2 Missense_Mutation p.V150I 0.48 tolerated(0.45) benign(0.016) TCGA-VQ-A8P2-01 9 135073751 135073751 C A NTNG2 Silent p.G204G 0.17 TCGA-VQ-A8P2-01 9 135102293 135102293 C T NTNG2 Silent p.C305C 0.38 TCGA-VQ-A8P2-01 9 135171306 135171306 A T SETX Missense_Mutation p.I2020N 0.18 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 9 135206808 135206808 G A SETX Missense_Mutation p.A289V 0.48 deleterious(0.04) probably_damaging(0.999) TCGA-VQ-A8P2-01 9 135251283 135251283 C T TTF1 3'UTR 0.60 TCGA-VQ-A8P2-01 9 135462908 135462908 C T BARHL1 Missense_Mutation p.T220M 0.46 deleterious(0.01) probably_damaging(0.996) TCGA-VQ-A8P2-01 9 135464699 135464699 G A BARHL1 Silent p.P258P 0.48 TCGA-VQ-A8P2-01 9 135505724 135505724 G T DDX31 Missense_Mutation p.H625N 0.35 tolerated(0.4) benign(0.017) TCGA-VQ-A8P2-01 9 135553405 135553405 C T GTF3C4 Silent p.F133F 0.39 TCGA-VQ-A8P2-01 9 135940061 135940061 C T CEL Silent p.C87C 0.37 TCGA-VQ-A8P2-01 9 136031422 136031422 C A GBGT1 Missense_Mutation p.K56N 0.11 deleterious(0.03) possibly_damaging(0.724) TCGA-VQ-A8P2-01 9 136198882 136198882 C T SURF6 Silent p.R303R 0.16 TCGA-VQ-A8P2-01 9 136227186 136227186 A G SURF2 Missense_Mutation p.D188G 0.46 benign(0.009) TCGA-VQ-A8P2-01 9 136406086 136406086 C T ADAMTSL2 Silent p.H215H 0.45 TCGA-VQ-A8P2-01 9 136528897 136528897 C T SARDH 3'UTR 0.36 TCGA-VQ-A8P2-01 9 136529113 136529113 G A SARDH Silent p.S885S 0.32 TCGA-VQ-A8P2-01 9 136629160 136629160 C T VAV2 3'UTR 0.41 TCGA-VQ-A8P2-01 9 136637093 136637093 G A VAV2 Silent p.F737F 0.35 TCGA-VQ-A8P2-01 9 137293625 137293625 A G RXRA Missense_Mutation p.N59S 0.38 tolerated(0.37) benign(0.026) TCGA-VQ-A8P2-01 9 137642452 137642452 T A COL5A1 Missense_Mutation p.L520H 0.15 probably_damaging(0.998) TCGA-VQ-A8P2-01 9 137775158 137775158 C - FCN2 Frame_Shift_Del p.P77Lfs*23 0.34 TCGA-VQ-A8P2-01 9 138011386 138011386 G A OLFM1 Missense_Mutation p.V256I 0.12 deleterious(0) possibly_damaging(0.751) TCGA-VQ-A8P2-01 9 138377269 138377269 C A PPP1R26 Missense_Mutation p.L305I 0.09 tolerated(0.2) benign(0.15) TCGA-VQ-A8P2-01 9 138379876 138379876 C T PPP1R26 Nonsense_Mutation p.R1174* 0.33 TCGA-VQ-A8P2-01 9 138713309 138713309 G A CAMSAP1 Silent p.D1066D 0.38 TCGA-VQ-A8P2-01 9 138839734 138839734 T G UBAC1 Missense_Mutation p.K117N 0.36 deleterious(0) benign(0.273) TCGA-VQ-A8P2-01 9 139008603 139008603 G A C9orf69 Silent p.R48R 0.44 TCGA-VQ-A8P2-01 9 139090879 139090879 G A LHX3 Missense_Mutation p.R166C 0.67 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 9 139229082 139229082 G A GPSM1 Missense_Mutation p.G83S 0.39 tolerated(0.86) benign(0.01) TCGA-VQ-A8P2-01 9 139282005 139282005 G A SNAPC4 Silent p.Y419Y 0.30 TCGA-VQ-A8P2-01 9 139287000 139287000 C T SNAPC4 Missense_Mutation p.D262N 0.36 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 9 139298588 139298588 C T SDCCAG3 Missense_Mutation p.S376N 0.37 tolerated(0.29) benign(0.049) TCGA-VQ-A8P2-01 9 139311456 139311456 C T PMPCA Silent p.N229N 0.45 TCGA-VQ-A8P2-01 9 139325453 139325453 C T INPP5E Splice_Site p.X555_splice 0.39 TCGA-VQ-A8P2-01 9 139371657 139371657 C T SEC16A Silent p.E137E 0.08 TCGA-VQ-A8P2-01 9 139379476 139379476 C A C9orf163 Silent p.S192S 0.56 TCGA-VQ-A8P2-01 9 139401847 139401847 C T NOTCH1 Missense_Mutation p.D1185N 0.36 tolerated(1) benign(0) TCGA-VQ-A8P2-01 9 139571940 139571940 C T AGPAT2 Missense_Mutation p.R84H 0.26 tolerated(0.13) benign(0) TCGA-VQ-A8P2-01 9 139734235 139734235 C - RABL6 Frame_Shift_Del p.A619Pfs*4 0.28 TCGA-VQ-A8P2-01 9 139751827 139751827 C T MAMDC4 Silent p.F705F 0.40 TCGA-VQ-A8P2-01 9 139908316 139908316 G A ABCA2 Missense_Mutation p.A1472V 0.71 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 9 139908348 139908348 C A ABCA2 Missense_Mutation p.Q1461H 0.17 deleterious(0.03) probably_damaging(0.998) TCGA-VQ-A8P2-01 9 139908820 139908820 G A ABCA2 Missense_Mutation p.A1347V 0.36 tolerated(0.4) benign(0.022) TCGA-VQ-A8P2-01 9 139911709 139911709 T C ABCA2 Missense_Mutation p.Y831C 0.36 tolerated(0.22) probably_damaging(0.994) TCGA-VQ-A8P2-01 9 140110127 140110127 C A NDOR1 Silent p.P435P 0.34 TCGA-VQ-A8P2-01 9 140139780 140139780 G A FAM166A Silent p.C167C 0.39 TCGA-VQ-A8P2-01 9 140145830 140145830 C T C9orf173 Missense_Mutation p.T31I 0.39 tolerated(0.05) benign(0.058) TCGA-VQ-A8P2-01 9 140151336 140151336 G A NELFB Missense_Mutation p.V143M 0.27 deleterious(0.03) benign(0.315) TCGA-VQ-A8P2-01 9 140329374 140329374 G A ENTPD8 Nonsense_Mutation p.Q494* 0.55 TCGA-VQ-A8P2-01 9 140357273 140357273 C T PNPLA7 Missense_Mutation p.R1119Q 0.27 deleterious(0) benign(0.406) TCGA-VQ-A8P2-01 9 140392658 140392658 C T PNPLA7 Silent p.A599A 0.38 TCGA-VQ-A8P2-01 9 140437221 140437221 A G PNPLA7 Missense_Mutation p.L180P 0.38 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 9 140777195 140777195 G A CACNA1B Splice_Site p.X131_splice 0.23 TCGA-VQ-A8P2-01 9 140880918 140880918 C G CACNA1B Missense_Mutation p.S608C 0.25 deleterious(0) possibly_damaging(0.588) TCGA-VQ-A8P2-01 9 140904512 140904512 G A CACNA1B Missense_Mutation p.A715T 0.39 deleterious(0) benign(0.004) TCGA-VQ-A8P2-01 9 141070110 141070110 C T TUBBP5 RNA 0.35 TCGA-VQ-A8P2-01 9 14618933 14618933 G A ZDHHC21 3'UTR 0.35 TCGA-VQ-A8P2-01 9 14619000 14619000 T C ZDHHC21 Silent p.P254P 0.29 TCGA-VQ-A8P2-01 9 14619094 14619094 G A ZDHHC21 Missense_Mutation p.S223L 0.28 tolerated(0.64) benign(0.174) TCGA-VQ-A8P2-01 9 14619638 14619638 T C ZDHHC21 Missense_Mutation p.I222V 0.09 tolerated(0.66) benign(0.002) TCGA-VQ-A8P2-01 9 14748421 14748421 C A FREM1 Missense_Mutation p.R1925M 0.21 deleterious(0.02) benign(0.064) TCGA-VQ-A8P2-01 9 15459748 15459748 G T SNAPC3 Nonsense_Mutation p.E374* 0.11 TCGA-VQ-A8P2-01 9 15874589 15874589 G A CCDC171 Silent p.Q1176Q 0.09 TCGA-VQ-A8P2-01 9 16419575 16419575 C T BNC2 Silent p.S904S 0.35 TCGA-VQ-A8P2-01 9 16419599 16419599 G A BNC2 Silent p.L896L 0.33 TCGA-VQ-A8P2-01 9 16437377 16437377 G A BNC2 Missense_Mutation p.A272V 0.14 tolerated(1) benign(0.034) TCGA-VQ-A8P2-01 9 17394806 17394806 G A CNTLN Missense_Mutation p.R785K 0.13 tolerated(0.09) benign(0.088) TCGA-VQ-A8P2-01 9 17791294 17791294 C T SH3GL2 Silent p.V230V 0.33 TCGA-VQ-A8P2-01 9 17793478 17793478 G A SH3GL2 Missense_Mutation p.G281D 0.28 tolerated(0.31) benign(0.021) TCGA-VQ-A8P2-01 9 18680349 18680350 - G ADAMTSL1 Frame_Shift_Ins p.I396Hfs*30 0.44 TCGA-VQ-A8P2-01 9 19058264 19058264 C T HAUS6 Missense_Mutation p.R834H 0.35 tolerated(0.54) benign(0.002) TCGA-VQ-A8P2-01 9 19324397 19324397 C T DENND4C Silent p.F615F 0.38 TCGA-VQ-A8P2-01 9 19379706 19379706 C T RPS6 Intron 0.57 TCGA-VQ-A8P2-01 9 19516358 19516358 G T SLC24A2 Missense_Mutation p.F593L 0.61 tolerated(1) benign(0.001) TCGA-VQ-A8P2-01 9 19619589 19619589 G A SLC24A2 Silent p.L357L 0.38 TCGA-VQ-A8P2-01 9 19786137 19786137 G T SLC24A2 Missense_Mutation p.S243Y 0.42 deleterious(0) probably_damaging(0.979) TCGA-VQ-A8P2-01 9 2032958 2032958 G A SMARCA2 Missense_Mutation p.D78N 0.14 probably_damaging(0.986) TCGA-VQ-A8P2-01 9 2056757 2056757 G A SMARCA2 Missense_Mutation p.R420H 0.40 possibly_damaging(0.522) TCGA-VQ-A8P2-01 9 20944746 20944746 C T FOCAD Silent p.S1176S 0.11 TCGA-VQ-A8P2-01 9 2096761 2096761 G T SMARCA2 Missense_Mutation p.K996N 0.09 possibly_damaging(0.728) TCGA-VQ-A8P2-01 9 2104047 2104047 G A SMARCA2 Missense_Mutation p.R1057H 0.16 possibly_damaging(0.522) TCGA-VQ-A8P2-01 9 21141090 21141090 G A IFNW1 Silent p.S160S 0.38 TCGA-VQ-A8P2-01 9 21206986 21206986 G A IFNA10 Silent p.A37A 0.57 TCGA-VQ-A8P2-01 9 21333291 21333291 T C KLHL9 Missense_Mutation p.D523G 0.48 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A8P2-01 9 21971190 21971190 G A CDKN2A Silent p.S56S 0.33 TCGA-VQ-A8P2-01 9 22006224 22006224 C T CDKN2B Missense_Mutation p.R60H 0.23 tolerated(0.09) benign(0.019) TCGA-VQ-A8P2-01 9 22447689 22447689 G A DMRTA1 Missense_Mutation p.A209T 0.51 tolerated(0.27) benign(0.005) TCGA-VQ-A8P2-01 9 23692745 23692745 C T ELAVL2 Missense_Mutation p.G297E 0.09 deleterious(0) probably_damaging(0.965) TCGA-VQ-A8P2-01 9 23701593 23701593 C A ELAVL2 Missense_Mutation p.R166M 0.31 deleterious(0) possibly_damaging(0.817) TCGA-VQ-A8P2-01 9 2643347 2643347 C T VLDLR Silent p.C212C 0.41 TCGA-VQ-A8P2-01 9 2651938 2651938 G A VLDLR Nonsense_Mutation p.W800* 0.15 TCGA-VQ-A8P2-01 9 26886159 26886160 - T CAAP1 Frame_Shift_Ins p.L178Tfs*11 0.17 TCGA-VQ-A8P2-01 9 27168529 27168529 A C TEK Missense_Mutation p.D134A 0.09 deleterious(0) benign(0.046) TCGA-VQ-A8P2-01 9 27359183 27359183 C T MOB3B Missense_Mutation p.R157H 0.20 deleterious(0) probably_damaging(0.942) TCGA-VQ-A8P2-01 9 27950384 27950384 C T LINGO2 Missense_Mutation p.V96M 0.31 tolerated(0.13) probably_damaging(0.994) TCGA-VQ-A8P2-01 9 32457027 32457027 G A DDX58 3'UTR 0.43 TCGA-VQ-A8P2-01 9 32541383 32541383 T - TOPORS 3'UTR 0.32 TCGA-VQ-A8P2-01 9 32632296 32632296 C A TAF1L Missense_Mutation p.K1094N 0.07 deleterious(0) benign(0.427) TCGA-VQ-A8P2-01 9 33036660 33036660 C T DNAJA1 Nonsense_Mutation p.R283* 0.14 TCGA-VQ-A8P2-01 9 33255178 33255178 G A BAG1 3'UTR 0.43 TCGA-VQ-A8P2-01 9 33294677 33294677 G A NFX1 Silent p.S95S 0.39 TCGA-VQ-A8P2-01 9 33295160 33295160 A C NFX1 Silent p.R256R 0.29 TCGA-VQ-A8P2-01 9 33469001 33469001 G A NOL6 Silent p.G327G 0.14 TCGA-VQ-A8P2-01 9 33469229 33469229 G A NOL6 Nonsense_Mutation p.R280* 0.15 TCGA-VQ-A8P2-01 9 33469617 33469617 G A NOL6 Missense_Mutation p.R203C 0.41 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 9 33676645 33676645 G A PTENP1 RNA 0.08 TCGA-VQ-A8P2-01 9 33927913 33927913 G A UBAP2 Silent p.S751S 0.43 TCGA-VQ-A8P2-01 9 34256025 34256025 T C KIF24 Missense_Mutation p.T1194A 0.46 tolerated(0.43) benign(0.003) TCGA-VQ-A8P2-01 9 34371199 34371199 G A KIAA1161 Silent p.A547A 0.21 TCGA-VQ-A8P2-01 9 34372092 34372092 A G KIAA1161 Missense_Mutation p.C250R 0.30 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 9 34521645 34521645 C T ENHO Missense_Mutation p.G17S 0.50 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-VQ-A8P2-01 9 34564726 34564726 G T CNTFR Missense_Mutation p.L64M 0.25 tolerated(0.13) benign(0.111) TCGA-VQ-A8P2-01 9 34623992 34623992 G A ARID3C Silent p.Y148Y 0.23 TCGA-VQ-A8P2-01 9 34996295 34996295 C T DNAJB5 Missense_Mutation p.S196F 0.42 deleterious(0.01) benign(0.243) TCGA-VQ-A8P2-01 9 35043164 35043164 C T C9orf131 Missense_Mutation p.H180Y 0.55 tolerated(0.22) benign(0.047) TCGA-VQ-A8P2-01 9 35059525 35059525 G T VCP Missense_Mutation p.L657I 0.50 deleterious(0.04) possibly_damaging(0.486) TCGA-VQ-A8P2-01 9 35078185 35078185 G A FANCG Missense_Mutation p.R155C 0.39 tolerated(0.19) benign(0.014) TCGA-VQ-A8P2-01 9 35089056 35089056 T C PIGO 3'UTR 0.12 TCGA-VQ-A8P2-01 9 35382468 35382468 C A UNC13B Silent p.V841V 0.36 TCGA-VQ-A8P2-01 9 35450217 35450217 C T ATP8B5P RNA 0.46 TCGA-VQ-A8P2-01 9 35616558 35616558 C T CD72 Intron 0.26 TCGA-VQ-A8P2-01 9 35704432 35704432 C T TLN1 Missense_Mutation p.A1982T 0.50 deleterious(0.02) possibly_damaging(0.791) TCGA-VQ-A8P2-01 9 35711732 35711732 C T TLN1 Missense_Mutation p.A1247T 0.41 tolerated(0.07) probably_damaging(0.948) TCGA-VQ-A8P2-01 9 35725614 35725614 G A TLN1 Silent p.Y26Y 0.37 TCGA-VQ-A8P2-01 9 35792987 35792987 C T NPR2 Silent p.S194S 0.44 TCGA-VQ-A8P2-01 9 35800025 35800025 C A NPR2 Missense_Mutation p.L332I 0.11 tolerated(0.49) benign(0.01) TCGA-VQ-A8P2-01 9 35825959 35825959 A G FAM221B Missense_Mutation p.L67S 0.31 deleterious(0.03) possibly_damaging(0.866) TCGA-VQ-A8P2-01 9 36169949 36169949 C T CCIN Silent p.D150D 0.29 TCGA-VQ-A8P2-01 9 36233983 36233983 G A GNE Nonsense_Mutation p.R337* 0.42 TCGA-VQ-A8P2-01 9 36234070 36234070 G A GNE Missense_Mutation p.R308C 0.29 tolerated(0.08) possibly_damaging(0.899) TCGA-VQ-A8P2-01 9 36643012 36643012 G T MELK Missense_Mutation p.D285Y 0.31 deleterious(0.01) probably_damaging(0.977) TCGA-VQ-A8P2-01 9 36882020 36882020 C T PAX5 Silent p.T331T 0.45 TCGA-VQ-A8P2-01 9 37126384 37126384 G A ZCCHC7 Missense_Mutation p.D19N 0.09 deleterious(0) possibly_damaging(0.584) TCGA-VQ-A8P2-01 9 37430575 37430575 C T GRHPR Silent p.T222T 0.34 TCGA-VQ-A8P2-01 9 37442022 37442022 C T ZBTB5 Missense_Mutation p.R176H 0.40 deleterious(0.01) possibly_damaging(0.482) TCGA-VQ-A8P2-01 9 37442242 37442242 C T ZBTB5 Missense_Mutation p.A103T 0.41 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 9 37516018 37516018 G A FBXO10 Missense_Mutation p.A860V 0.29 tolerated(0.08) benign(0.074) TCGA-VQ-A8P2-01 9 37541442 37541442 A G FBXO10 Silent p.R108R 0.10 TCGA-VQ-A8P2-01 9 377074 377074 C T DOCK8 Missense_Mutation p.A768V 0.53 deleterious(0.03) benign(0.001) TCGA-VQ-A8P2-01 9 37745111 37745111 G A FRMPD1 Missense_Mutation p.A1028T 0.36 tolerated_low_confidence(0.71) benign(0.001) TCGA-VQ-A8P2-01 9 37770016 37770016 G A TRMT10B Missense_Mutation p.A218T 0.46 tolerated(0.17) benign(0.124) TCGA-VQ-A8P2-01 9 38396265 38396265 G A ALDH1B1 Missense_Mutation p.E174K 0.09 deleterious(0.01) probably_damaging(0.997) TCGA-VQ-A8P2-01 9 40774710 40774710 A G ZNF658 Missense_Mutation p.Y189H 0.33 tolerated(0.2) benign(0.002) TCGA-VQ-A8P2-01 9 4118617 4118617 C T GLIS3 Silent p.R287R 0.35 TCGA-VQ-A8P2-01 9 420429 420429 C T DOCK8 Missense_Mutation p.A1290V 0.53 tolerated(0.08) possibly_damaging(0.549) TCGA-VQ-A8P2-01 9 4544656 4544656 C T SLC1A1 Missense_Mutation p.R61W 0.37 deleterious(0) probably_damaging(0.99) TCGA-VQ-A8P2-01 9 4635326 4635326 C T SPATA6L Intron 0.40 TCGA-VQ-A8P2-01 9 4684900 4684900 G A CDC37L1 Silent p.L52L 0.36 TCGA-VQ-A8P2-01 9 5126729 5126729 C T JAK2 Missense_Mutation p.R1113C 0.35 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 9 5456127 5456127 C A CD274 Missense_Mutation p.A5D 0.38 tolerated(0.23) benign(0.002) TCGA-VQ-A8P2-01 9 5534950 5534950 C A PDCD1LG2 Missense_Mutation p.F87L 0.11 tolerated(0.72) possibly_damaging(0.512) TCGA-VQ-A8P2-01 9 5763384 5763384 C A KIAA1432 Missense_Mutation p.A786D 0.08 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 9 5765701 5765701 C T KIAA1432 Nonsense_Mutation p.R1014* 0.08 TCGA-VQ-A8P2-01 9 5769250 5769250 C T KIAA1432 Nonsense_Mutation p.R1140* 0.37 TCGA-VQ-A8P2-01 9 5801292 5801292 T - ERMP1 Frame_Shift_Del p.T651Pfs*3 0.25 TCGA-VQ-A8P2-01 9 5920093 5920093 T C KIAA2026 Missense_Mutation p.N1968S 0.44 deleterious(0.04) probably_damaging(0.971) TCGA-VQ-A8P2-01 9 5988345 5988346 - T KIAA2026 Frame_Shift_Ins p.R265Kfs*14 0.29 TCGA-VQ-A8P2-01 9 6329033 6329033 C T TPD52L3 3'UTR 0.47 TCGA-VQ-A8P2-01 9 6793019 6793019 A G KDM4C Missense_Mutation p.N11D 0.38 deleterious(0) possibly_damaging(0.878) TCGA-VQ-A8P2-01 9 69382208 69382208 G A ANKRD20A4 Missense_Mutation p.R39K 0.36 tolerated(1) benign(0.022) TCGA-VQ-A8P2-01 9 69421905 69421905 A - ANKRD20A4 Frame_Shift_Del p.N459Ifs*5 0.40 TCGA-VQ-A8P2-01 9 6986411 6986411 T C KDM4C Silent p.Y474Y 0.34 TCGA-VQ-A8P2-01 9 71094380 71094380 C A PGM5 Silent p.V402V 0.06 TCGA-VQ-A8P2-01 9 711061 711061 G A KANK1 Missense_Mutation p.D99N 0.41 deleterious(0.01) possibly_damaging(0.58) TCGA-VQ-A8P2-01 9 72131389 72131389 G A APBA1 Silent p.S246S 0.38 TCGA-VQ-A8P2-01 9 72131749 72131749 G A APBA1 Silent p.A126A 0.25 TCGA-VQ-A8P2-01 9 72435774 72435774 G T C9orf135 5'UTR 0.39 TCGA-VQ-A8P2-01 9 72895751 72895751 G T SMC5 Missense_Mutation p.R252M 0.13 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8P2-01 9 73225596 73225596 G A TRPM3 Missense_Mutation p.R854W 0.39 deleterious(0.01) probably_damaging(0.986) TCGA-VQ-A8P2-01 9 74300760 74300760 G A TMEM2 Missense_Mutation p.S1285F 0.35 deleterious(0.01) possibly_damaging(0.878) TCGA-VQ-A8P2-01 9 74340543 74340543 G T TMEM2 Missense_Mutation p.T711N 0.31 deleterious(0.01) probably_damaging(0.943) TCGA-VQ-A8P2-01 9 75778399 75778399 G A ANXA1 Missense_Mutation p.R188Q 0.33 deleterious(0) probably_damaging(0.986) TCGA-VQ-A8P2-01 9 75781108 75781108 G A ANXA1 Missense_Mutation p.V268M 0.53 deleterious(0) possibly_damaging(0.836) TCGA-VQ-A8P2-01 9 75782450 75782450 G T ANXA1 Missense_Mutation p.E280D 0.31 tolerated(0.24) possibly_damaging(0.809) TCGA-VQ-A8P2-01 9 77277434 77277434 C T RORB Silent p.H268H 0.37 TCGA-VQ-A8P2-01 9 77353332 77353332 C A TRPM6 Missense_Mutation p.D1923Y 0.38 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 9 77473654 77473654 G A TRPM6 Missense_Mutation p.S15F 0.22 deleterious(0) possibly_damaging(0.861) TCGA-VQ-A8P2-01 9 78686742 78686742 G A PCSK5 Silent p.P274P 0.39 TCGA-VQ-A8P2-01 9 78773989 78773989 C T PCSK5 Silent p.H507H 0.18 TCGA-VQ-A8P2-01 9 79259766 79259766 C T PRUNE2 Missense_Mutation p.E2873K 0.39 deleterious(0) probably_damaging(0.993) TCGA-VQ-A8P2-01 9 79318895 79318895 G A PRUNE2 Missense_Mutation p.A2545V 0.36 tolerated(0.16) benign(0.034) TCGA-VQ-A8P2-01 9 79325181 79325181 G A PRUNE2 Missense_Mutation p.A670V 0.12 deleterious(0.01) possibly_damaging(0.536) TCGA-VQ-A8P2-01 9 79438553 79438553 G T PRUNE2 Missense_Mutation p.L251I 0.43 deleterious(0.01) probably_damaging(0.955) TCGA-VQ-A8P2-01 9 79890495 79890495 G A VPS13A Missense_Mutation p.R865Q 0.36 tolerated(0.32) benign(0.004) TCGA-VQ-A8P2-01 9 79954765 79954765 C T VPS13A Missense_Mutation p.P2238S 0.33 tolerated(0.21) possibly_damaging(0.842) TCGA-VQ-A8P2-01 9 80919650 80919650 G T PSAT1 Splice_Site p.X64_splice 0.32 TCGA-VQ-A8P2-01 9 80943972 80943973 - A PSAT1 Frame_Shift_Ins p.F364Ifs*12 0.31 TCGA-VQ-A8P2-01 9 82189837 82189837 C T TLE4 Missense_Mutation p.R65W 0.09 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 9 82339961 82339961 T G TLE4 Missense_Mutation p.S742A 0.09 deleterious(0) possibly_damaging(0.821) TCGA-VQ-A8P2-01 9 8449838 8449838 C A PTPRD Splice_Site p.X1292_splice 0.43 TCGA-VQ-A8P2-01 9 84607908 84607908 C A SPATA31D1 Silent p.I841I 0.51 TCGA-VQ-A8P2-01 9 86451878 86451878 C A KIF27 3'UTR 0.15 TCGA-VQ-A8P2-01 9 86506406 86506407 - T KIF27 Frame_Shift_Ins p.I538Nfs*13 0.25 TCGA-VQ-A8P2-01 9 86523555 86523555 T C KIF27 Missense_Mutation p.E104G 0.39 deleterious(0) possibly_damaging(0.861) TCGA-VQ-A8P2-01 9 86584769 86584769 C T HNRNPK Intron 0.19 TCGA-VQ-A8P2-01 9 86585198 86585198 G A HNRNPK Missense_Mutation p.R414C 0.37 deleterious(0.03) benign(0.01) TCGA-VQ-A8P2-01 9 87636279 87636279 A G NTRK2 Missense_Mutation p.N815S 0.15 tolerated(0.56) benign(0.004) TCGA-VQ-A8P2-01 9 88293304 88293305 - T AGTPBP1 Frame_Shift_Ins p.D79Rfs*7 0.15 TCGA-VQ-A8P2-01 9 88880907 88880907 A G ISCA1 3'UTR 0.14 TCGA-VQ-A8P2-01 9 90584745 90584745 C T CDK20 Missense_Mutation p.R218H 0.09 tolerated(0.16) benign(0.02) TCGA-VQ-A8P2-01 9 91616119 91616119 G A S1PR3 Missense_Mutation p.A2T 0.17 deleterious_low_confidence(0.01) benign(0.115) TCGA-VQ-A8P2-01 9 91666965 91666965 C T SHC3 Missense_Mutation p.A317T 0.22 tolerated(1) benign(0.021) TCGA-VQ-A8P2-01 9 91680458 91680458 G A SHC3 Missense_Mutation p.P274L 0.12 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 9 91964831 91964831 C T SECISBP2 Missense_Mutation p.R627C 0.40 deleterious(0) probably_damaging(0.991) TCGA-VQ-A8P2-01 9 92020309 92020309 C T SEMA4D Silent p.A21A 0.35 TCGA-VQ-A8P2-01 9 93640035 93640035 C T SYK Missense_Mutation p.P455L 0.12 deleterious(0) possibly_damaging(0.891) TCGA-VQ-A8P2-01 9 94809541 94809541 C T SPTLC1 Missense_Mutation p.G332S 0.36 deleterious(0.02) probably_damaging(0.99) TCGA-VQ-A8P2-01 9 95400377 95400377 G C IPPK Missense_Mutation p.D274E 0.27 tolerated(0.09) benign(0.074) TCGA-VQ-A8P2-01 9 95481033 95481033 C T BICD2 Missense_Mutation p.A632T 0.46 deleterious(0) probably_damaging(0.991) TCGA-VQ-A8P2-01 9 96024336 96024336 G A WNK2 Missense_Mutation p.G1103R 0.48 unknown(0) TCGA-VQ-A8P2-01 9 96030127 96030127 G T WNK2 Missense_Mutation p.D1266Y 0.26 unknown(0) TCGA-VQ-A8P2-01 9 96081396 96081396 C A C9orf129 Missense_Mutation p.Q142H 0.16 deleterious_low_confidence(0.04) benign(0.387) TCGA-VQ-A8P2-01 9 96278438 96278438 G A FAM120A Silent p.S435S 0.56 TCGA-VQ-A8P2-01 9 96305531 96305531 C T FAM120A Missense_Mutation p.A646V 0.20 tolerated(1) benign(0.054) TCGA-VQ-A8P2-01 9 96320186 96320186 G A FAM120A Silent p.T854T 0.39 TCGA-VQ-A8P2-01 9 968163 968163 T C DMRT1 3'UTR 0.23 TCGA-VQ-A8P2-01 9 97369187 97369188 - T FBP1 Frame_Shift_Ins p.K206Efs*3 0.28 TCGA-VQ-A8P2-01 9 977294 977294 C T DMRT3 Missense_Mutation p.P98L 0.32 tolerated(0.4) probably_damaging(0.913) TCGA-VQ-A8P2-01 9 98220363 98220363 C T PTCH1 Missense_Mutation p.V1034M 0.15 deleterious(0.01) possibly_damaging(0.806) TCGA-VQ-A8P2-01 9 99252311 99252311 G A HABP4 Silent p.A411A 0.43 TCGA-VQ-A8P2-01 9 99252415 99252415 G T HABP4 3'UTR 0.54 TCGA-VQ-A8P2-01 9 99285664 99285664 C T CDC14B Missense_Mutation p.R375H 0.36 tolerated(0.05) benign(0.001) TCGA-VQ-A8P2-01 9 99607181 99607181 C T ZNF782 Missense_Mutation p.V45I 0.17 tolerated(0.34) benign(0.016) TCGA-VQ-A8P2-01 X 100646510 100646510 G A RPL36A-HNRNPH2 Missense_Mutation p.V34M 0.90 deleterious_low_confidence(0.02) possibly_damaging(0.897) TCGA-VQ-A8P2-01 X 10085202 10085202 G A WWC3 Missense_Mutation p.S368N 0.74 deleterious(0) probably_damaging(0.959) TCGA-VQ-A8P2-01 X 100880630 100880630 C T ARMCX3 Nonsense_Mutation p.Q221* 0.85 TCGA-VQ-A8P2-01 X 101409174 101409174 C T BEX5 Missense_Mutation p.A22T 0.74 tolerated(0.35) benign(0.002) TCGA-VQ-A8P2-01 X 101912596 101912596 C T GPRASP1 Missense_Mutation p.P1252L 0.76 tolerated(0.45) benign(0.016) TCGA-VQ-A8P2-01 X 101912761 101912761 T C GPRASP1 Missense_Mutation p.L1307P 0.71 tolerated(0.09) benign(0) TCGA-VQ-A8P2-01 X 103359097 103359097 C T ZCCHC18 Missense_Mutation p.R99C 0.17 tolerated(0.08) possibly_damaging(0.901) TCGA-VQ-A8P2-01 X 104984676 104984676 G A IL1RAPL2 Missense_Mutation p.R347H 0.81 tolerated(0.26) benign(0.006) TCGA-VQ-A8P2-01 X 105139513 105139513 C T NRK Silent p.L193L 0.75 TCGA-VQ-A8P2-01 X 105167187 105167187 C A NRK Silent p.L897L 0.29 TCGA-VQ-A8P2-01 X 105450685 105450685 A C MUM1L1 Silent p.A420A 0.67 TCGA-VQ-A8P2-01 X 106031183 106031183 C T RNF128 Silent p.C280C 0.90 TCGA-VQ-A8P2-01 X 106033492 106033492 C A RNF128 Missense_Mutation p.L322I 0.10 deleterious(0) benign(0.294) TCGA-VQ-A8P2-01 X 106046090 106046090 C T TBC1D8B Silent p.L3L 0.87 TCGA-VQ-A8P2-01 X 107332015 107332015 C T PSMD10 Silent p.L60L 0.06 TCGA-VQ-A8P2-01 X 107682632 107682632 C T COL4A6 5'UTR 0.30 TCGA-VQ-A8P2-01 X 107975754 107975754 G A IRS4 3'UTR 0.26 TCGA-VQ-A8P2-01 X 107978082 107978082 C T IRS4 Missense_Mutation p.G498D 0.33 tolerated_low_confidence(0.07) unknown(0) TCGA-VQ-A8P2-01 X 109298606 109298606 G T TMEM164 Intron 0.35 TCGA-VQ-A8P2-01 X 11272739 11272739 C T ARHGAP6 Missense_Mutation p.R226Q 0.71 deleterious(0.01) probably_damaging(0.986) TCGA-VQ-A8P2-01 X 114141643 114141643 A G HTR2C Missense_Mutation p.K348E 0.11 tolerated(1) benign(0.017) TCGA-VQ-A8P2-01 X 114881876 114881876 C T PLS3 Silent p.T506T 0.23 TCGA-VQ-A8P2-01 X 115582606 115582606 G T SLC6A14 Splice_Site p.X311_splice 0.31 TCGA-VQ-A8P2-01 X 117722394 117722395 TG - DOCK11 Frame_Shift_Del p.V668Gfs*7 0.43 TCGA-VQ-A8P2-01 X 117819758 117819758 C T DOCK11 Silent p.Y2070Y 0.85 TCGA-VQ-A8P2-01 X 118220519 118220519 G A KIAA1210 Silent p.C1558C 0.64 TCGA-VQ-A8P2-01 X 118604094 118604094 C A SLC25A5 Silent p.I194I 0.11 TCGA-VQ-A8P2-01 X 118675299 118675299 G A CXorf56 Nonsense_Mutation p.Q200* 0.79 TCGA-VQ-A8P2-01 X 118971999 118971999 G A UPF3B Silent p.S341S 0.85 TCGA-VQ-A8P2-01 X 119211086 119211086 C T RHOXF2B Missense_Mutation p.A83T 0.62 tolerated(0.57) benign(0.001) TCGA-VQ-A8P2-01 X 119513392 119513392 C A ATP1B4 Missense_Mutation p.P326H 0.10 tolerated(0.54) benign(0.161) TCGA-VQ-A8P2-01 X 120008973 120008973 G A CT47B1 Silent p.G184G 0.79 TCGA-VQ-A8P2-01 X 120181764 120181764 C T GLUD2 Missense_Mutation p.R76C 0.11 deleterious(0) possibly_damaging(0.664) TCGA-VQ-A8P2-01 X 122755345 122755345 C T THOC2 Silent p.R1293R 0.82 TCGA-VQ-A8P2-01 X 123171417 123171417 G A STAG2 Missense_Mutation p.R110Q 0.81 tolerated(0.17) possibly_damaging(0.852) TCGA-VQ-A8P2-01 X 123519838 123519838 G A TENM1 Missense_Mutation p.T1922I 0.71 deleterious(0.01) possibly_damaging(0.573) TCGA-VQ-A8P2-01 X 123657426 123657426 G A TENM1 Nonsense_Mutation p.R941* 0.95 TCGA-VQ-A8P2-01 X 123838873 123838873 G T TENM1 Silent p.A335A 0.41 TCGA-VQ-A8P2-01 X 125298954 125298954 C T DCAF12L2 Silent p.L318L 0.81 TCGA-VQ-A8P2-01 X 125299552 125299552 G A DCAF12L2 Missense_Mutation p.T119M 0.76 deleterious(0) probably_damaging(0.981) TCGA-VQ-A8P2-01 X 125685191 125685191 C T DCAF12L1 3'UTR 0.27 TCGA-VQ-A8P2-01 X 125686632 125686632 C T DCAF12L1 5'UTR 1.00 TCGA-VQ-A8P2-01 X 12734918 12734918 C A FRMPD4 Silent p.I780I 0.09 TCGA-VQ-A8P2-01 X 128881606 128881606 G A XPNPEP2 Missense_Mutation p.A172T 0.18 tolerated(0.48) benign(0.043) TCGA-VQ-A8P2-01 X 128926612 128926612 G A SASH3 Missense_Mutation p.V201M 0.23 deleterious(0.02) benign(0.023) TCGA-VQ-A8P2-01 X 129190011 129190011 C - BCORL1 Frame_Shift_Del p.P1681Qfs*20 0.49 TCGA-VQ-A8P2-01 X 129270061 129270061 G A AIFM1 Missense_Mutation p.R422W 0.87 deleterious(0.02) probably_damaging(0.999) TCGA-VQ-A8P2-01 X 12938123 12938123 T G TLR8 Missense_Mutation p.Y322D 0.86 deleterious(0) probably_damaging(0.992) TCGA-VQ-A8P2-01 X 129519387 129519387 G T GPR119 Missense_Mutation p.A12D 0.26 deleterious(0) probably_damaging(0.974) TCGA-VQ-A8P2-01 X 129629642 129629642 T C RP1-274L7.1 Intron 0.79 TCGA-VQ-A8P2-01 X 132161681 132161681 T C USP26 Missense_Mutation p.M190V 0.08 tolerated(0.13) benign(0.032) TCGA-VQ-A8P2-01 X 132161704 132161704 C A USP26 Missense_Mutation p.R182I 0.70 tolerated(0.1) benign(0.035) TCGA-VQ-A8P2-01 X 134166505 134166505 A G FAM127A Missense_Mutation p.E31G 0.77 deleterious(0) possibly_damaging(0.877) TCGA-VQ-A8P2-01 X 134948042 134948042 C T CT45A5 Missense_Mutation p.G95R 0.10 tolerated(0.17) possibly_damaging(0.868) TCGA-VQ-A8P2-01 X 134993393 134993393 A C SAGE1 Missense_Mutation p.N683T 0.81 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8P2-01 X 135095107 135095107 C T SLC9A6 Splice_Site p.X348_splice 0.08 TCGA-VQ-A8P2-01 X 135430074 135430074 G A GPR112 Silent p.V1403V 0.81 TCGA-VQ-A8P2-01 X 13771505 13771505 G T OFD1 Missense_Mutation p.K358N 0.79 deleterious(0.01) probably_damaging(0.979) TCGA-VQ-A8P2-01 X 137939775 137939775 G A FGF13 Missense_Mutation p.A39V 0.83 deleterious_low_confidence(0.02) benign(0.002) TCGA-VQ-A8P2-01 X 138857048 138857048 G T ATP11C Missense_Mutation p.L676I 0.83 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 X 139038550 139038550 C T CXorf66 Silent p.A197A 0.78 TCGA-VQ-A8P2-01 X 140785811 140785811 C T SPANXD Silent p.P35P 0.82 TCGA-VQ-A8P2-01 X 140953353 140953353 C T MAGEC3 Nonsense_Mutation p.R74* 0.46 TCGA-VQ-A8P2-01 X 1428562 1428562 C A CSF2RA 3'UTR 0.25 TCGA-VQ-A8P2-01 X 144329175 144329175 T C SPANXN1 Silent p.N23N 0.80 TCGA-VQ-A8P2-01 X 144337483 144337483 C A SPANXN1 3'UTR 0.13 TCGA-VQ-A8P2-01 X 144909307 144909307 C T TMEM257 Silent p.L38L 0.80 TCGA-VQ-A8P2-01 X 146307377 146307377 C T MIR513A2 RNA 0.90 TCGA-VQ-A8P2-01 X 147743657 147743657 C T AFF2 Missense_Mutation p.P137S 0.74 tolerated(0.15) possibly_damaging(0.54) TCGA-VQ-A8P2-01 X 148798035 148798035 C T MAGEA11 Missense_Mutation p.L297F 0.10 deleterious(0.03) probably_damaging(0.912) TCGA-VQ-A8P2-01 X 149102109 149102109 G T CXorf40B 5'UTR 0.82 TCGA-VQ-A8P2-01 X 14910988 14910988 A C MOSPD2 Missense_Mutation p.I75L 0.83 tolerated(0.08) benign(0) TCGA-VQ-A8P2-01 X 149639682 149639682 C A MAMLD1 Missense_Mutation p.L588I 0.75 deleterious(0.04) probably_damaging(0.992) TCGA-VQ-A8P2-01 X 149671585 149671585 C T MAMLD1 Intron 0.79 TCGA-VQ-A8P2-01 X 149937403 149937403 A T CD99L2 3'UTR 0.33 TCGA-VQ-A8P2-01 X 149944761 149944761 C T CD99L2 Missense_Mutation p.V181M 0.79 tolerated(0.3) possibly_damaging(0.74) TCGA-VQ-A8P2-01 X 152034497 152034497 C T NSDHL Silent p.F226F 0.79 TCGA-VQ-A8P2-01 X 152128414 152128414 C T ZNF185 Silent p.F558F 0.64 TCGA-VQ-A8P2-01 X 152713143 152713143 C A HAUS7 3'UTR 0.14 TCGA-VQ-A8P2-01 X 15272947 15272947 A G ASB9 Missense_Mutation p.I65T 0.10 tolerated(0.1) benign(0.017) TCGA-VQ-A8P2-01 X 152806877 152806878 - C ATP2B3 Frame_Shift_Ins p.Q94Afs*42 0.18 TCGA-VQ-A8P2-01 X 153005685 153005685 C T ABCD1 Missense_Mutation p.P543L 0.80 deleterious(0) possibly_damaging(0.554) TCGA-VQ-A8P2-01 X 153034426 153034426 C A PLXNB3 Silent p.G453G 0.10 TCGA-VQ-A8P2-01 X 153036254 153036254 C T PLXNB3 Silent p.V707V 0.76 TCGA-VQ-A8P2-01 X 153052970 153052970 G A IDH3G Missense_Mutation p.A208V 0.89 deleterious(0) probably_damaging(0.943) TCGA-VQ-A8P2-01 X 153069909 153069909 C A PDZD4 Missense_Mutation p.E403D 0.39 tolerated(0.1) benign(0.179) TCGA-VQ-A8P2-01 X 153070570 153070570 T G PDZD4 Missense_Mutation p.K248N 0.08 tolerated(0.41) benign(0.001) TCGA-VQ-A8P2-01 X 153134321 153134321 C T L1CAM Missense_Mutation p.G452R 0.78 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 X 153208354 153208354 C T RENBP Missense_Mutation p.A214T 0.07 tolerated(0.34) benign(0.014) TCGA-VQ-A8P2-01 X 153296091 153296091 G A MECP2 Silent p.S408S 0.83 TCGA-VQ-A8P2-01 X 153539213 153539213 A T TKTL1 Missense_Mutation p.D126V 0.36 deleterious(0) probably_damaging(0.969) TCGA-VQ-A8P2-01 X 153581469 153581469 C T FLNA Silent p.S2042S 0.28 TCGA-VQ-A8P2-01 X 153628811 153628811 A G RPL10 Silent p.Q112Q 0.88 TCGA-VQ-A8P2-01 X 153670473 153670473 T C GDI1 Missense_Mutation p.M336T 0.70 tolerated(0.3) benign(0.061) TCGA-VQ-A8P2-01 X 153716943 153716943 C A SLC10A3 Nonsense_Mutation p.E113* 0.92 TCGA-VQ-A8P2-01 X 153760976 153760976 G A G6PD Missense_Mutation p.R395C 0.82 deleterious(0) probably_damaging(0.947) TCGA-VQ-A8P2-01 X 153906448 153906448 G A GAB3 3'UTR 0.74 TCGA-VQ-A8P2-01 X 154020080 154020080 C T MPP1 Missense_Mutation p.A97T 0.76 deleterious(0.01) probably_damaging(0.967) TCGA-VQ-A8P2-01 X 15402068 15402068 T C FIGF Translation_Start_Site p.M1? 0.90 deleterious(0) probably_damaging(0.986) TCGA-VQ-A8P2-01 X 154157017 154157017 T A F8 Missense_Mutation p.Y1683F 0.84 deleterious(0.01) probably_damaging(0.998) TCGA-VQ-A8P2-01 X 155234163 155234163 C T IL9R Missense_Mutation p.A171V 0.37 tolerated(0.17) possibly_damaging(0.615) TCGA-VQ-A8P2-01 X 155239513 155239513 G A IL9R Silent p.L335L 0.27 TCGA-VQ-A8P2-01 X 155239702 155239702 G A IL9R Silent p.T398T 0.24 TCGA-VQ-A8P2-01 X 15599402 15599402 T C ACE2 Missense_Mutation p.N338D 0.75 tolerated(1) benign(0) TCGA-VQ-A8P2-01 X 1584733 1584733 G A P2RY8 Missense_Mutation p.A240V 0.30 tolerated(0.89) benign(0.016) TCGA-VQ-A8P2-01 X 16142169 16142169 C T GRPR Silent p.N31N 0.08 TCGA-VQ-A8P2-01 X 17047709 17047709 G T REPS2 Missense_Mutation p.G245V 0.26 deleterious(0.04) possibly_damaging(0.566) TCGA-VQ-A8P2-01 X 17157020 17157020 G A REPS2 Missense_Mutation p.R617H 0.71 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 X 1719944 1719944 C T AKAP17A Silent p.S515S 0.31 TCGA-VQ-A8P2-01 X 1752146 1752146 C A ASMT Missense_Mutation p.F250L 0.09 deleterious(0.04) benign(0.386) TCGA-VQ-A8P2-01 X 17705867 17705867 T C NHS Missense_Mutation p.S191P 0.85 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P2-01 X 18602452 18602452 G A CDKL5 Missense_Mutation p.R178Q 0.73 deleterious_low_confidence(0) possibly_damaging(0.857) TCGA-VQ-A8P2-01 X 18912482 18912482 G A PHKA2 Missense_Mutation p.S1126L 0.18 deleterious(0.01) benign(0.409) TCGA-VQ-A8P2-01 X 18919699 18919699 T C PHKA2 Silent p.T977T 0.70 TCGA-VQ-A8P2-01 X 19380944 19380944 T - MAP3K15 Frame_Shift_Del p.E1198Rfs*12 0.49 TCGA-VQ-A8P2-01 X 20043094 20043094 G A MAP7D2 Nonsense_Mutation p.R463* 0.11 TCGA-VQ-A8P2-01 X 20153904 20153904 G A EIF1AX Silent p.F52F 0.43 TCGA-VQ-A8P2-01 X 20252924 20252924 C A RPS6KA3 Missense_Mutation p.Q26H 0.19 tolerated_low_confidence(0.38) benign(0.001) TCGA-VQ-A8P2-01 X 21508687 21508687 C T CNKSR2 Silent p.S224S 0.25 TCGA-VQ-A8P2-01 X 21990053 21990053 T C SMS Missense_Mutation p.L70S 0.84 tolerated(0.69) benign(0.025) TCGA-VQ-A8P2-01 X 2209603 2209603 G A DHRSX Missense_Mutation p.R110W 0.11 deleterious(0.03) benign(0.262) TCGA-VQ-A8P2-01 X 224081 224081 G A GTPBP6 Missense_Mutation p.A229V 0.42 tolerated(0.3) benign(0.198) TCGA-VQ-A8P2-01 X 23697293 23697293 C A PRDX4 Missense_Mutation p.P163H 0.85 deleterious(0) benign(0.094) TCGA-VQ-A8P2-01 X 23803944 23803944 T C SAT1 Missense_Mutation p.Y163H 0.32 tolerated(0.15) benign(0.001) TCGA-VQ-A8P2-01 X 2408506 2408506 C A ZBED1 Missense_Mutation p.Q85H 0.37 tolerated(0.1) benign(0.366) TCGA-VQ-A8P2-01 X 2936658 2936658 G A ARSH Missense_Mutation p.R283H 0.84 tolerated(0.21) benign(0.009) TCGA-VQ-A8P2-01 X 30739080 30739080 T C GK Missense_Mutation p.M484T 0.94 tolerated(0.66) benign(0.001) TCGA-VQ-A8P2-01 X 3238127 3238127 C T MXRA5 Missense_Mutation p.A1867T 0.84 deleterious(0.04) possibly_damaging(0.73) TCGA-VQ-A8P2-01 X 3242751 3242751 C T MXRA5 Silent p.E325E 0.83 TCGA-VQ-A8P2-01 X 34149549 34149549 G A FAM47A Missense_Mutation p.R283W 0.65 tolerated(0.12) possibly_damaging(0.835) TCGA-VQ-A8P2-01 X 34962971 34962971 A T FAM47B 3'UTR 0.91 TCGA-VQ-A8P2-01 X 37027077 37027077 C - FAM47C Frame_Shift_Del p.P200Rfs*625 0.44 TCGA-VQ-A8P2-01 X 37029618 37029618 G A FAM47C 3'UTR 0.85 TCGA-VQ-A8P2-01 X 37586936 37586936 C T XK Missense_Mutation p.R186C 0.97 deleterious(0.05) probably_damaging(0.985) TCGA-VQ-A8P2-01 X 37948785 37948785 G A SYTL5 Missense_Mutation p.G259D 0.25 tolerated(0.62) benign(0.017) TCGA-VQ-A8P2-01 X 38024077 38024077 G A SRPX Missense_Mutation p.R200W 0.93 deleterious(0) probably_damaging(0.984) TCGA-VQ-A8P2-01 X 38420803 38420803 G A TSPAN7 Missense_Mutation p.A2T 0.29 deleterious(0.01) benign(0.17) TCGA-VQ-A8P2-01 X 39931683 39931683 G A BCOR Silent p.Y972Y 0.88 TCGA-VQ-A8P2-01 X 39931809 39931810 - G BCOR Frame_Shift_Ins p.P931Tfs*15 0.40 TCGA-VQ-A8P2-01 X 39932995 39932995 G A BCOR Missense_Mutation p.A535V 0.79 tolerated(1) probably_damaging(0.995) TCGA-VQ-A8P2-01 X 41206255 41206255 C T DDX3X Missense_Mutation p.R587C 0.78 tolerated(0.1) benign(0.007) TCGA-VQ-A8P2-01 X 41394180 41394180 C T CASK Silent p.L729L 0.89 TCGA-VQ-A8P2-01 X 41524623 41524623 G A CASK Silent p.C205C 0.81 TCGA-VQ-A8P2-01 X 44937700 44937700 C T KDM6A Missense_Mutation p.P963L 0.50 deleterious(0) possibly_damaging(0.893) TCGA-VQ-A8P2-01 X 46913630 46913630 C T JADE3 Missense_Mutation p.T348I 0.86 deleterious(0) probably_damaging(0.99) TCGA-VQ-A8P2-01 X 47098545 47098545 C A USP11 Missense_Mutation p.P128T 0.21 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 X 48559110 48559110 G A SUV39H1 Missense_Mutation p.R265H 0.89 tolerated(0.14) benign(0.032) TCGA-VQ-A8P2-01 X 48631801 48631801 C T GLOD5 Nonsense_Mutation p.R145* 0.96 TCGA-VQ-A8P2-01 X 48673388 48673388 C T HDAC6 Missense_Mutation p.P360L 0.20 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P2-01 X 48783264 48783264 C A OTUD5 Missense_Mutation p.Q379H 0.09 deleterious(0.01) possibly_damaging(0.611) TCGA-VQ-A8P2-01 X 48923026 48923026 C T CCDC120 Missense_Mutation p.P242S 0.67 deleterious(0.02) possibly_damaging(0.901) TCGA-VQ-A8P2-01 X 49021127 49021127 G T MAGIX Missense_Mutation p.Q93H 0.25 deleterious(0) probably_damaging(0.976) TCGA-VQ-A8P2-01 X 49106178 49106178 G A CCDC22 Missense_Mutation p.E588K 0.55 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 X 49957585 49957585 G A AKAP4 Silent p.A593A 0.19 TCGA-VQ-A8P2-01 X 49958916 49958916 C A AKAP4 Missense_Mutation p.A150S 0.18 tolerated(0.48) benign(0.001) TCGA-VQ-A8P2-01 X 50213212 50213212 C A DGKK RNA 0.83 TCGA-VQ-A8P2-01 X 51638289 51638289 G A MAGED1 Missense_Mutation p.M118I 0.75 deleterious_low_confidence(0.03) unknown(0) TCGA-VQ-A8P2-01 X 53561650 53561650 G A HUWE1 Missense_Mutation p.R4220C 0.93 unknown(0) TCGA-VQ-A8P2-01 X 54492147 54492147 G A FGD1 Silent p.V493V 0.62 TCGA-VQ-A8P2-01 X 54492257 54492257 G T FGD1 Missense_Mutation p.L457M 0.18 tolerated(0.14) probably_damaging(0.998) TCGA-VQ-A8P2-01 X 54952111 54952111 G A TRO Silent p.L524L 0.38 TCGA-VQ-A8P2-01 X 55042166 55042166 C T ALAS2 Missense_Mutation p.C338Y 0.75 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P2-01 X 56259773 56259773 C T KLF8 Silent p.V2V 0.67 TCGA-VQ-A8P2-01 X 57934433 57934433 G A ZXDA 3'UTR 0.86 TCGA-VQ-A8P2-01 X 57935738 57935738 C T ZXDA Missense_Mutation p.A373T 0.90 tolerated(0.3) probably_damaging(0.999) TCGA-VQ-A8P2-01 X 595437 595437 G A SHOX Missense_Mutation p.R121H 0.27 deleterious(0) probably_damaging(0.991) TCGA-VQ-A8P2-01 X 63412545 63412545 C T AMER1 Missense_Mutation p.V208M 0.76 tolerated(0.08) benign(0.118) TCGA-VQ-A8P2-01 X 63557213 63557213 C A MTMR8 Missense_Mutation p.A346S 0.14 tolerated(0.26) possibly_damaging(0.774) TCGA-VQ-A8P2-01 X 64138865 64138865 G A ZC4H2 Intron 0.86 TCGA-VQ-A8P2-01 X 64734801 64734801 C T LAS1L Silent p.E660E 0.71 TCGA-VQ-A8P2-01 X 65409535 65409535 G A HEPH Missense_Mutation p.G327D 0.18 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 X 67751874 67751874 G A YIPF6 3'UTR 0.85 TCGA-VQ-A8P2-01 X 67938433 67938433 C T STARD8 Silent p.R559R 0.40 TCGA-VQ-A8P2-01 X 69263487 69263487 C T AWAT2 Missense_Mutation p.V105I 0.30 tolerated(0.21) benign(0.037) TCGA-VQ-A8P2-01 X 69713241 69713241 C T DLG3 Intron 0.91 TCGA-VQ-A8P2-01 X 70147196 70147196 C T SLC7A3 Missense_Mutation p.D408N 0.57 deleterious(0.04) benign(0.232) TCGA-VQ-A8P2-01 X 70349681 70349681 C T MED12 Silent p.Y1281Y 0.69 TCGA-VQ-A8P2-01 X 70375089 70375089 C T NLGN3 Silent p.P201P 0.64 TCGA-VQ-A8P2-01 X 70387072 70387072 C T NLGN3 Silent p.G375G 0.93 TCGA-VQ-A8P2-01 X 70783005 70783005 C T OGT Missense_Mutation p.S725F 0.34 deleterious(0.02) benign(0.368) TCGA-VQ-A8P2-01 X 71350666 71350666 C T RGAG4 Missense_Mutation p.R242H 0.89 tolerated(0.17) probably_damaging(0.986) TCGA-VQ-A8P2-01 X 71351315 71351315 G A RGAG4 Missense_Mutation p.R26C 0.83 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-VQ-A8P2-01 X 71428008 71428008 T C ERCC6L Silent p.Q203Q 0.86 TCGA-VQ-A8P2-01 X 72434174 72434174 G T NAP1L2 Missense_Mutation p.A52D 0.14 deleterious_low_confidence(0) probably_damaging(0.975) TCGA-VQ-A8P2-01 X 7252077 7252077 G A STS Missense_Mutation p.R436H 0.73 tolerated(1) benign(0.009) TCGA-VQ-A8P2-01 X 7268107 7268107 C T STS Silent p.S519S 0.25 TCGA-VQ-A8P2-01 X 73046080 73046080 T - XIST RNA 0.80 TCGA-VQ-A8P2-01 X 73072018 73072018 C T XIST RNA 0.91 TCGA-VQ-A8P2-01 X 73524621 73524621 C - ZCCHC13 3'UTR 0.44 TCGA-VQ-A8P2-01 X 73964202 73964202 G T KIAA2022 Missense_Mutation p.L64I 0.74 tolerated_low_confidence(0.09) benign(0.081) TCGA-VQ-A8P2-01 X 75004754 75004754 G - MAGEE2 Frame_Shift_Del p.Q45Sfs*27 0.50 TCGA-VQ-A8P2-01 X 75648849 75648849 G A MAGEE1 Missense_Mutation p.V176M 0.19 tolerated_low_confidence(0.05) benign(0.375) TCGA-VQ-A8P2-01 X 77294453 77294453 C T ATP7A Missense_Mutation p.R1211W 0.66 deleterious(0) probably_damaging(0.992) TCGA-VQ-A8P2-01 X 77296164 77296164 C A ATP7A Missense_Mutation p.S1245Y 0.12 deleterious(0.01) benign(0.018) TCGA-VQ-A8P2-01 X 79698240 79698240 G T FAM46D Missense_Mutation p.A68S 0.15 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 X 83362682 83362682 G T RPS6KA6 Missense_Mutation p.P354T 0.83 tolerated(0.07) benign(0.405) TCGA-VQ-A8P2-01 X 83374987 83374987 G A RPS6KA6 Missense_Mutation p.S232L 0.74 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 X 84519313 84519313 G A ZNF711 Missense_Mutation p.G219R 0.86 deleterious(0.03) probably_damaging(0.979) TCGA-VQ-A8P2-01 X 86868928 86868928 G A KLHL4 Silent p.E157E 0.78 TCGA-VQ-A8P2-01 X 90690844 90690844 C T PABPC5 Missense_Mutation p.R90C 0.64 deleterious(0) probably_damaging(1) TCGA-VQ-A8P2-01 X 91132396 91132396 C T PCDH11X Missense_Mutation p.T386M 0.10 tolerated(0.07) benign(0.152) TCGA-VQ-A8P2-01 X 91132729 91132729 C A PCDH11X Missense_Mutation p.P497H 0.78 tolerated(0.22) benign(0.002) TCGA-VQ-A8P2-01 X 92964438 92964438 G A FAM133A Missense_Mutation p.R7Q 1.00 tolerated_low_confidence(0.07) benign(0.362) TCGA-VQ-A8P2-01 X 96192241 96192242 - A DIAPH2 Frame_Shift_Ins p.E369Rfs*3 0.59 TCGA-VQ-A8P2-01 Y 14898719 14898719 G T USP9Y Missense_Mutation p.D1183Y 0.72 deleterious(0.01) benign(0.139) TCGA-VQ-A8P2-01 Y 14952972 14952972 C T USP9Y Missense_Mutation p.T2042I 0.26 tolerated(0.1) benign(0.025) TCGA-VQ-A8P2-01 Y 14954181 14954181 C T USP9Y Silent p.C2076C 0.78 TCGA-VQ-A8P2-01 Y 21906376 21906376 C A KDM5D Silent p.P15P 0.33 TCGA-VQ-A8P2-01 Y 22918666 22918666 C A RPS4Y2 Silent p.A2A 0.87 TCGA-VQ-A8P2-01 Y 2655460 2655460 C T SRY Missense_Mutation p.R62Q 0.15 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8P2-01 Y 4924963 4924963 G A PCDH11Y Silent p.K33K 0.15 TCGA-VQ-A8P2-01 Y 4925117 4925117 C A PCDH11Y Missense_Mutation p.P85T 0.48 deleterious(0.04) benign(0.236) TCGA-VQ-A8P2-01 Y 4966922 4966922 G A PCDH11Y Missense_Mutation p.E435K 0.13 deleterious(0) possibly_damaging(0.615) TCGA-VQ-A8P2-01 Y 7193965 7193965 G T RN7SKP282 5'Flank 0.83 TCGA-VQ-A8P3-01 10 108459101 108459101 T C SORCS1 Silent p.Q428Q 0.31 TCGA-VQ-A8P3-01 10 118315589 118315589 T G PNLIP Missense_Mutation p.F297V 0.23 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P3-01 10 17127597 17127597 A C CUBN Silent p.P703P 0.26 TCGA-VQ-A8P3-01 10 28224143 28224143 A C ARMC4 Missense_Mutation p.L764R 0.27 deleterious(0) probably_damaging(1) TCGA-VQ-A8P3-01 10 35896694 35896694 G A GJD4 Missense_Mutation p.V85I 0.29 tolerated(0.41) benign(0.096) TCGA-VQ-A8P3-01 10 50594753 50594753 T G DRGX Missense_Mutation p.K134T 0.19 tolerated(0.09) benign(0.325) TCGA-VQ-A8P3-01 10 55892660 55892660 A C PCDH15 Missense_Mutation p.V631G 0.23 deleterious(0) benign(0.266) TCGA-VQ-A8P3-01 10 67748510 67748510 C T CTNNA3 Silent p.A735A 0.13 TCGA-VQ-A8P3-01 10 69832710 69832710 A G HERC4 Silent p.D52D 0.17 TCGA-VQ-A8P3-01 10 69926386 69926386 G A MYPN Missense_Mutation p.V646M 0.42 tolerated(0.15) benign(0.297) TCGA-VQ-A8P3-01 10 88683357 88683357 C T BMPR1A Nonsense_Mutation p.R494* 0.19 TCGA-VQ-A8P3-01 10 98742233 98742233 C A C10orf12 Silent p.P362P 0.29 TCGA-VQ-A8P3-01 10 98742242 98742242 A G C10orf12 Silent p.E365E 0.27 TCGA-VQ-A8P3-01 11 100920660 100920660 T G PGR Missense_Mutation p.I830L 0.30 deleterious(0.03) possibly_damaging(0.507) TCGA-VQ-A8P3-01 11 103870963 103870963 A C PDGFD Missense_Mutation p.L49V 0.30 tolerated(0.09) probably_damaging(0.997) TCGA-VQ-A8P3-01 11 106558376 106558376 T G GUCY1A2 Silent p.R731R 0.25 TCGA-VQ-A8P3-01 11 115099940 115099940 A C CADM1 Missense_Mutation p.L205R 0.21 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8P3-01 11 121016289 121016289 C T TECTA Missense_Mutation p.P1190L 0.25 deleterious(0) possibly_damaging(0.575) TCGA-VQ-A8P3-01 11 121016671 121016671 A G TECTA Silent p.K1317K 0.20 TCGA-VQ-A8P3-01 11 123810660 123810660 T C OR4D5 Missense_Mutation p.F113L 0.29 deleterious(0.04) benign(0.002) TCGA-VQ-A8P3-01 11 124748274 124748276 CCT - ROBO3 In_Frame_Del p.P1090del 0.09 TCGA-VQ-A8P3-01 11 32413574 32413574 T G WT1 Missense_Mutation p.K459T 0.30 deleterious_low_confidence(0.01) probably_damaging(0.98) TCGA-VQ-A8P3-01 11 5373356 5373356 T G OR51B6 Missense_Mutation p.L207V 0.28 tolerated(0.21) benign(0.098) TCGA-VQ-A8P3-01 11 55432832 55432832 T C OR4C6 Silent p.L64L 0.23 TCGA-VQ-A8P3-01 11 55606243 55606243 A G OR5D16 Missense_Mutation p.R6G 0.19 tolerated(0.69) benign(0.005) TCGA-VQ-A8P3-01 11 55872919 55872919 T G OR8H2 Missense_Mutation p.V134G 0.11 deleterious(0) possibly_damaging(0.616) TCGA-VQ-A8P3-01 11 56258818 56258818 T G OR5M8 Missense_Mutation p.E10A 0.25 deleterious(0) possibly_damaging(0.721) TCGA-VQ-A8P3-01 11 57507613 57507613 C T TMX2 Missense_Mutation p.R263W 0.24 deleterious(0) possibly_damaging(0.453) TCGA-VQ-A8P3-01 11 58979847 58979847 A C MPEG1 Silent p.T164T 0.33 TCGA-VQ-A8P3-01 11 6806402 6806402 T A OR2AG1 Missense_Mutation p.L45Q 0.28 deleterious(0) probably_damaging(1) TCGA-VQ-A8P3-01 11 8494817 8494817 T A STK33 Nonsense_Mutation p.R78* 0.06 TCGA-VQ-A8P3-01 11 92532322 92532322 A G FAT3 Missense_Mutation p.E2048G 0.29 benign(0.261) TCGA-VQ-A8P3-01 11 96125332 96125332 C T JRKL Missense_Mutation p.R507C 0.20 deleterious(0) probably_damaging(0.983) TCGA-VQ-A8P3-01 12 10218206 10218206 A C CLEC9A Missense_Mutation p.K234T 0.14 deleterious(0.03) possibly_damaging(0.511) TCGA-VQ-A8P3-01 12 10319479 10319479 A G OLR1 Missense_Mutation p.S86P 0.26 tolerated(0.07) benign(0.308) TCGA-VQ-A8P3-01 12 10962556 10962556 T C TAS2R9 Missense_Mutation p.D40G 0.28 deleterious(0.03) benign(0.007) TCGA-VQ-A8P3-01 12 109834208 109834208 G A MYO1H Missense_Mutation p.A88T 0.07 tolerated(0.09) possibly_damaging(0.638) TCGA-VQ-A8P3-01 12 111776207 111776207 G A CUX2 Missense_Mutation p.R1105H 0.11 deleterious(0) probably_damaging(0.983) TCGA-VQ-A8P3-01 12 112451178 112451178 G T ERP29 5'UTR 0.33 TCGA-VQ-A8P3-01 12 129569120 129569120 A C TMEM132D Missense_Mutation p.L524R 0.21 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P3-01 12 18891330 18891330 T G CAPZA3 Missense_Mutation p.L43R 0.45 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P3-01 12 21331524 21331524 T C SLCO1B1 Missense_Mutation p.S166P 0.24 tolerated(0.26) benign(0.232) TCGA-VQ-A8P3-01 12 22089503 22089503 A C ABCC9 Missense_Mutation p.F36V 0.35 tolerated(0.12) benign(0.387) TCGA-VQ-A8P3-01 12 39087498 39087498 T G CPNE8 Missense_Mutation p.K368N 0.26 deleterious(0) possibly_damaging(0.568) TCGA-VQ-A8P3-01 12 40713841 40713841 T G LRRK2 Missense_Mutation p.S1627A 0.28 tolerated(0.12) benign(0.002) TCGA-VQ-A8P3-01 12 41966186 41966186 A C PDZRN4 Missense_Mutation p.E535D 0.31 tolerated(1) benign(0.061) TCGA-VQ-A8P3-01 12 43826214 43826214 A C ADAMTS20 Missense_Mutation p.F997V 0.46 tolerated(0.5) benign(0.281) TCGA-VQ-A8P3-01 12 4554463 4554463 C T FGF6 Missense_Mutation p.V92M 0.23 deleterious(0.03) benign(0.073) TCGA-VQ-A8P3-01 12 46245027 46245027 C T ARID2 Nonsense_Mutation p.Q1041* 0.20 TCGA-VQ-A8P3-01 12 49460309 49460309 T G RHEBL1 Missense_Mutation p.Q94H 0.32 deleterious(0.03) benign(0.004) TCGA-VQ-A8P3-01 12 51457823 51457825 CTC - CSRNP2 In_Frame_Del p.E446del 0.27 TCGA-VQ-A8P3-01 12 55715064 55715064 T G OR6C1 Silent p.P227P 0.30 TCGA-VQ-A8P3-01 12 80770910 80770910 A T OTOGL Silent p.R2254R 0.19 TCGA-VQ-A8P3-01 12 81624912 81624912 T G ACSS3 Missense_Mutation p.F531V 0.34 deleterious(0.01) benign(0.322) TCGA-VQ-A8P3-01 12 8325157 8325157 T G ZNF705A 5'UTR 0.29 TCGA-VQ-A8P3-01 12 91449283 91449283 A T KERA Missense_Mutation p.F259Y 0.28 deleterious(0) probably_damaging(0.978) TCGA-VQ-A8P3-01 12 91449306 91449306 A C KERA Missense_Mutation p.D251E 0.26 deleterious(0) benign(0.441) TCGA-VQ-A8P3-01 13 111287665 111287672 CATCCTCC - CARKD Intron 0.46 TCGA-VQ-A8P3-01 13 27250786 27250786 T G WASF3 Missense_Mutation p.L214R 0.22 deleterious(0) possibly_damaging(0.841) TCGA-VQ-A8P3-01 13 27333452 27333452 C A GPR12 Silent p.L171L 0.21 TCGA-VQ-A8P3-01 13 29601027 29601027 A C MTUS2 Missense_Mutation p.K741T 0.32 deleterious(0.02) benign(0.357) TCGA-VQ-A8P3-01 13 29608075 29608075 T G MTUS2 Nonsense_Mutation p.Y763* 0.14 TCGA-VQ-A8P3-01 13 35615243 35615243 A C NBEA Missense_Mutation p.E156D 0.25 tolerated(0.15) benign(0.39) TCGA-VQ-A8P3-01 13 36383190 36383190 A C DCLK1 Silent p.T577T 0.30 TCGA-VQ-A8P3-01 13 38154111 38154111 A C POSTN Missense_Mutation p.L516R 0.19 deleterious(0) possibly_damaging(0.857) TCGA-VQ-A8P3-01 13 84453953 84453953 A C SLITRK1 Missense_Mutation p.F564V 0.23 tolerated(0.09) benign(0.095) TCGA-VQ-A8P3-01 13 94482409 94482409 T G GPC6 Missense_Mutation p.F108V 0.25 deleterious(0.01) probably_damaging(0.993) TCGA-VQ-A8P3-01 14 22133790 22133790 G A OR4E2 Missense_Mutation p.R165H 0.31 tolerated(0.2) probably_damaging(0.947) TCGA-VQ-A8P3-01 14 22134211 22134211 A C OR4E2 Missense_Mutation p.Q305H 0.29 tolerated(0.17) benign(0.005) TCGA-VQ-A8P3-01 14 37153053 37153053 T G SLC25A21 Missense_Mutation p.K273T 0.08 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8P3-01 14 38311409 38311409 A C TTC6 Missense_Mutation p.K1858N 0.26 tolerated(0.05) possibly_damaging(0.553) TCGA-VQ-A8P3-01 14 52194809 52194809 A C FRMD6 3'UTR 0.36 TCGA-VQ-A8P3-01 15 24921281 24921281 T C NPAP1 Silent p.G89G 0.28 TCGA-VQ-A8P3-01 15 25468227 25468227 T C SNORD115-27 3'Flank 0.33 TCGA-VQ-A8P3-01 15 26792921 26792921 A C GABRB3 3'UTR 0.20 TCGA-VQ-A8P3-01 15 26866608 26866608 T G GABRB3 Missense_Mutation p.N105T 0.19 tolerated(0.16) probably_damaging(1) TCGA-VQ-A8P3-01 15 27777950 27777950 T C GABRG3 Missense_Mutation p.S443P 0.26 deleterious(0.01) possibly_damaging(0.681) TCGA-VQ-A8P3-01 15 30058649 30058649 G A TJP1 Missense_Mutation p.H137Y 0.23 tolerated(0.76) benign(0) TCGA-VQ-A8P3-01 15 31295052 31295052 C A TRPM1 Missense_Mutation p.S1301I 0.07 deleterious(0) benign(0.028) TCGA-VQ-A8P3-01 15 31329941 31329941 C T TRPM1 Silent p.A865A 0.19 TCGA-VQ-A8P3-01 15 35045039 35045039 T C GJD2 Silent p.Q202Q 0.17 TCGA-VQ-A8P3-01 15 42105824 42105824 A G MAPKBP1 Silent p.T281T 0.33 TCGA-VQ-A8P3-01 15 43378376 43378376 T A UBR1 Silent p.P48P 0.29 TCGA-VQ-A8P3-01 15 48797297 48797297 C T FBN1 Missense_Mutation p.V629I 0.27 benign(0.009) TCGA-VQ-A8P3-01 15 65964215 65964215 G A DENND4A Missense_Mutation p.S1459L 0.23 tolerated(0.27) benign(0.014) TCGA-VQ-A8P3-01 16 26147401 26147401 A G HS3ST4 Silent p.E401E 0.24 TCGA-VQ-A8P3-01 16 26147460 26147460 A C HS3ST4 Missense_Mutation p.D421A 0.19 deleterious(0.03) possibly_damaging(0.677) TCGA-VQ-A8P3-01 16 28478075 28478075 G A NPIPB7 Missense_Mutation p.T72I 0.33 tolerated_low_confidence(0.46) possibly_damaging(0.828) TCGA-VQ-A8P3-01 16 30206056 30206056 C T SLX1A Intron 0.19 TCGA-VQ-A8P3-01 16 51173043 51173043 A C SALL1 Missense_Mutation p.I1030M 0.32 tolerated(0.08) probably_damaging(0.988) TCGA-VQ-A8P3-01 16 66956095 66956095 G A RRAD Nonsense_Mutation p.R271* 0.37 TCGA-VQ-A8P3-01 17 19318458 19318458 C T RNF112 Missense_Mutation p.R412C 0.41 deleterious_low_confidence(0) probably_damaging(0.964) TCGA-VQ-A8P3-01 17 32683482 32683482 G A CCL13 5'UTR 0.29 TCGA-VQ-A8P3-01 17 36484393 36484393 C T GPR179 Missense_Mutation p.D1687N 0.28 tolerated(0.06) benign(0.001) TCGA-VQ-A8P3-01 17 60059745 60059745 C T MED13 Missense_Mutation p.D1207N 0.05 tolerated(0.21) possibly_damaging(0.787) TCGA-VQ-A8P3-01 17 67267322 67267322 T - ABCA5 Frame_Shift_Del p.N958Mfs*2 0.28 TCGA-VQ-A8P3-01 17 72851077 72851077 G A GRIN2C Missense_Mutation p.P52L 0.22 deleterious(0.01) benign(0.097) TCGA-VQ-A8P3-01 17 72860376 72860376 G A FDXR Missense_Mutation p.A342V 0.21 tolerated(0.07) benign(0.03) TCGA-VQ-A8P3-01 17 80573902 80573902 C T WDR45B Splice_Site p.X310_splice 0.21 TCGA-VQ-A8P3-01 18 21530076 21530076 G A LAMA3 Missense_Mutation p.G3199R 0.31 probably_damaging(0.993) TCGA-VQ-A8P3-01 18 25532220 25532220 A G CDH2 Missense_Mutation p.L873P 0.27 deleterious(0) probably_damaging(1) TCGA-VQ-A8P3-01 18 25568542 25568542 A G CDH2 Missense_Mutation p.S563P 0.22 deleterious(0) probably_damaging(0.959) TCGA-VQ-A8P3-01 18 61564333 61564333 T A SERPINB2 Silent p.A99A 0.26 TCGA-VQ-A8P3-01 18 65180266 65180266 T C DSEL Missense_Mutation p.K537R 0.06 tolerated(0.58) benign(0.008) TCGA-VQ-A8P3-01 18 65180462 65180462 T G DSEL Missense_Mutation p.S472R 0.29 deleterious(0.01) probably_damaging(0.933) TCGA-VQ-A8P3-01 18 65180692 65180692 A C DSEL Missense_Mutation p.L395R 0.32 deleterious(0) probably_damaging(1) TCGA-VQ-A8P3-01 18 70205428 70205428 A G CBLN2 Silent p.L220L 0.06 TCGA-VQ-A8P3-01 18 70205481 70205481 A C CBLN2 Missense_Mutation p.L202R 0.19 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8P3-01 18 70526206 70526206 A G NETO1 Silent p.F108F 0.24 TCGA-VQ-A8P3-01 19 10083625 10083625 G A COL5A3 Silent p.P1248P 0.37 TCGA-VQ-A8P3-01 19 13563736 13563736 A C CACNA1A Missense_Mutation p.L165V 0.29 possibly_damaging(0.567) TCGA-VQ-A8P3-01 19 23544803 23544805 TTC - ZNF91 In_Frame_Del p.E326del 0.20 TCGA-VQ-A8P3-01 19 34180142 34180142 A G CHST8 5'UTR 0.35 TCGA-VQ-A8P3-01 19 34791348 34791348 T G KIAA0355 5'UTR 0.23 TCGA-VQ-A8P3-01 19 37309846 37309846 C A ZNF790 Missense_Mutation p.R467L 0.24 tolerated(0.25) benign(0.295) TCGA-VQ-A8P3-01 19 37618265 37618265 T G ZNF420 Silent p.T124T 0.25 TCGA-VQ-A8P3-01 19 39589196 39589196 G A PAPL Missense_Mutation p.A74T 0.19 deleterious(0.04) benign(0.017) TCGA-VQ-A8P3-01 19 44891889 44891889 T C ZNF285 Missense_Mutation p.E173G 0.23 tolerated(0.21) benign(0.051) TCGA-VQ-A8P3-01 19 47542757 47542757 A G NPAS1 Silent p.P299P 0.23 TCGA-VQ-A8P3-01 19 50885945 50885945 G A NR1H2 3'UTR 0.27 TCGA-VQ-A8P3-01 19 52129359 52129359 C A SIGLEC5 Missense_Mutation p.A464S 0.32 tolerated(0.19) benign(0.022) TCGA-VQ-A8P3-01 19 52538657 52538657 A G ZNF432 Missense_Mutation p.L92S 0.27 tolerated(0.49) benign(0.002) TCGA-VQ-A8P3-01 19 53301774 53301774 A C ZNF28 3'UTR 0.50 TCGA-VQ-A8P3-01 19 53384144 53384144 A C ZNF320 Missense_Mutation p.L412R 0.20 deleterious(0.04) benign(0.02) TCGA-VQ-A8P3-01 19 53643551 53643551 T G ZNF347 3'UTR 0.18 TCGA-VQ-A8P3-01 19 57868911 57868911 T G ZNF304 Silent p.P558P 0.18 TCGA-VQ-A8P3-01 19 58437527 58437527 A G ZNF418 Silent p.P674P 0.25 TCGA-VQ-A8P3-01 19 58601662 58601662 A G ZSCAN18 Silent p.S47S 0.21 TCGA-VQ-A8P3-01 19 7571038 7571038 G A C19orf45 Silent p.P398P 0.24 TCGA-VQ-A8P3-01 19 9068744 9068744 A G MUC16 Silent p.S6234S 0.17 TCGA-VQ-A8P3-01 19 9083708 9083708 T G MUC16 Missense_Mutation p.S2703R 0.36 unknown(0) TCGA-VQ-A8P3-01 19 9204413 9204413 C T OR1M1 Missense_Mutation p.R165C 0.28 deleterious(0.01) benign(0.025) TCGA-VQ-A8P3-01 1 102269948 102269948 T C OLFM3 Missense_Mutation p.E408G 0.30 deleterious(0) possibly_damaging(0.596) TCGA-VQ-A8P3-01 1 107691256 107691256 T G NTNG1 Missense_Mutation p.V14G 0.25 deleterious_low_confidence(0) benign(0.23) TCGA-VQ-A8P3-01 1 115118221 115118221 C G BCAS2 Missense_Mutation p.V137L 0.21 tolerated(0.54) benign(0.22) TCGA-VQ-A8P3-01 1 12942149 12942149 T G PRAMEF4 Missense_Mutation p.K134T 0.26 tolerated(0.61) benign(0.354) TCGA-VQ-A8P3-01 1 147092483 147092487 TGGGG CGC BCL9 Frame_Shift_Del p.L841Pfs*20 0.22 TCGA-VQ-A8P3-01 1 150305566 150305566 A C PRPF3 Missense_Mutation p.E208D 0.44 tolerated(0.05) possibly_damaging(0.78) TCGA-VQ-A8P3-01 1 152279764 152279764 C T FLG Missense_Mutation p.R2533H 0.25 benign(0.156) TCGA-VQ-A8P3-01 1 152748930 152748930 A C LCE1F Missense_Mutation p.K28T 0.28 deleterious_low_confidence(0) unknown(0) TCGA-VQ-A8P3-01 1 152777872 152777872 T C LCE1C Missense_Mutation p.K28R 0.24 tolerated_low_confidence(0.44) unknown(0) TCGA-VQ-A8P3-01 1 156144723 156144723 C T SEMA4A Missense_Mutation p.P476S 0.29 tolerated(0.08) benign(0.034) TCGA-VQ-A8P3-01 1 157494335 157494335 C T FCRL5 Missense_Mutation p.R658H 0.43 tolerated(0.32) benign(0.079) TCGA-VQ-A8P3-01 1 157665142 157665142 T G FCRL3 Missense_Mutation p.H463P 0.16 tolerated(0.13) benign(0.008) TCGA-VQ-A8P3-01 1 157667003 157667003 A C FCRL3 Silent p.S257S 0.26 TCGA-VQ-A8P3-01 1 157667009 157667009 T C FCRL3 Silent p.S255S 0.29 TCGA-VQ-A8P3-01 1 160723023 160723023 A G SLAMF7 3'UTR 0.24 TCGA-VQ-A8P3-01 1 163044307 163044307 A T RGS4 Missense_Mutation p.K289M 0.17 deleterious_low_confidence(0.01) benign(0.032) TCGA-VQ-A8P3-01 1 16374511 16374511 G T CLCNKB Missense_Mutation p.C157F 0.20 deleterious(0.02) benign(0.315) TCGA-VQ-A8P3-01 1 173478717 173478717 A G SLC9C2 Missense_Mutation p.L1010P 0.30 deleterious(0) probably_damaging(0.959) TCGA-VQ-A8P3-01 1 175066551 175066551 A C TNN Splice_Site p.X530_splice 0.27 TCGA-VQ-A8P3-01 1 176012321 176012321 C T RFWD2 Splice_Site p.X538_splice 0.25 TCGA-VQ-A8P3-01 1 178485752 178485752 A G TEX35 Missense_Mutation p.I73M 0.31 deleterious(0) possibly_damaging(0.811) TCGA-VQ-A8P3-01 1 181680121 181680121 A - CACNA1E Frame_Shift_Del p.N363Tfs*6 0.26 TCGA-VQ-A8P3-01 1 183895330 183895330 A C RGL1 Missense_Mutation p.E772D 0.20 tolerated(0.63) benign(0.001) TCGA-VQ-A8P3-01 1 200971338 200971338 G A KIF21B Silent p.R451R 0.15 TCGA-VQ-A8P3-01 1 200978484 200978484 G A KIF21B Silent p.T58T 0.28 TCGA-VQ-A8P3-01 1 205238456 205238456 G A TMCC2 Missense_Mutation p.V376M 0.32 tolerated(0.1) probably_damaging(0.932) TCGA-VQ-A8P3-01 1 207086380 207086380 C A FAIM3 Missense_Mutation p.E127D 0.30 tolerated(0.31) benign(0.003) TCGA-VQ-A8P3-01 1 236645592 236645592 A C EDARADD Missense_Mutation p.K97N 0.35 tolerated(0.19) benign(0.051) TCGA-VQ-A8P3-01 1 236914899 236914899 A C ACTN2 Missense_Mutation p.S596R 0.29 tolerated(0.46) benign(0.062) TCGA-VQ-A8P3-01 1 240555839 240555839 T G FMN2 Missense_Mutation p.N1629K 0.14 benign(0.127) TCGA-VQ-A8P3-01 1 247875242 247875242 T G OR6F1 Missense_Mutation p.K272N 0.20 deleterious(0) probably_damaging(0.969) TCGA-VQ-A8P3-01 1 247978692 247978692 T C OR14A16 Missense_Mutation p.T114A 0.22 deleterious(0.01) possibly_damaging(0.576) TCGA-VQ-A8P3-01 1 248202573 248202573 A C OR2L2 3'UTR 0.22 TCGA-VQ-A8P3-01 1 248262934 248262934 C A OR2L13 Missense_Mutation p.S86Y 0.27 tolerated(0.59) possibly_damaging(0.895) TCGA-VQ-A8P3-01 1 34663275 34663275 A C C1orf94 Missense_Mutation p.K257T 0.18 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P3-01 1 35906653 35906653 C T KIAA0319L Missense_Mutation p.R986Q 0.28 deleterious(0.01) possibly_damaging(0.605) TCGA-VQ-A8P3-01 1 5993253 5993253 T C NPHP4 Missense_Mutation p.H419R 0.27 tolerated(0.76) benign(0.005) TCGA-VQ-A8P3-01 1 60499191 60499191 C T C1orf87 Missense_Mutation p.R329Q 0.30 tolerated(0.5) benign(0.117) TCGA-VQ-A8P3-01 1 61818196 61818196 C A NFIA Missense_Mutation p.P304T 0.32 deleterious(0.01) probably_damaging(0.967) TCGA-VQ-A8P3-01 1 61818198 61818198 A G NFIA Silent p.P304P 0.32 TCGA-VQ-A8P3-01 1 64643155 64643155 A C ROR1 Missense_Mutation p.E477D 0.22 deleterious(0.01) probably_damaging(0.985) TCGA-VQ-A8P3-01 1 67861509 67861509 G A IL12RB2 Missense_Mutation p.D776N 0.28 tolerated(0.27) benign(0.002) TCGA-VQ-A8P3-01 1 75037017 75037017 A G C1orf173 Silent p.T1459T 0.25 TCGA-VQ-A8P3-01 1 86437066 86437066 C T COL24A1 Missense_Mutation p.G792E 0.23 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P3-01 20 10030616 10030616 C T ANKEF1 Missense_Mutation p.R467W 0.26 deleterious(0) probably_damaging(0.928) TCGA-VQ-A8P3-01 20 31627172 31627172 A C BPIFB6 Missense_Mutation p.K307T 0.18 tolerated(0.1) benign(0.076) TCGA-VQ-A8P3-01 20 40727077 40727077 T G PTPRT Missense_Mutation p.E1277A 0.31 deleterious(0.01) probably_damaging(0.995) TCGA-VQ-A8P3-01 20 48494552 48494552 T A SLC9A8 Silent p.I386I 0.36 TCGA-VQ-A8P3-01 20 55108585 55108585 T C FAM209B Missense_Mutation p.L63P 0.27 deleterious(0.04) possibly_damaging(0.698) TCGA-VQ-A8P3-01 20 60503447 60503447 C T CDH4 Silent p.A657A 0.28 TCGA-VQ-A8P3-01 20 61981078 61981078 G A CHRNA4 Missense_Mutation p.P562L 0.30 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8P3-01 21 35257366 35257366 C T ITSN1 Silent p.I1566I 0.31 TCGA-VQ-A8P3-01 21 36171737 36171737 G C RUNX1 Silent p.S276S 0.26 TCGA-VQ-A8P3-01 21 45977946 45977946 T C KRTAP10-3 Missense_Mutation p.K218R 0.19 deleterious_low_confidence(0.05) probably_damaging(0.986) TCGA-VQ-A8P3-01 22 16279232 16279232 T C POTEH Missense_Mutation p.K331E 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A8P3-01 22 22786707 22786707 A C IGLV1-36 Missense_Mutation p.K86T 0.19 deleterious_low_confidence(0) benign(0.166) TCGA-VQ-A8P3-01 22 26348297 26348297 G A MYO18B Missense_Mutation p.V1960M 0.15 deleterious(0.02) possibly_damaging(0.886) TCGA-VQ-A8P3-01 22 30184912 30184912 T C ASCC2 3'UTR 0.28 TCGA-VQ-A8P3-01 22 33245511 33245511 A G TIMP3 Missense_Mutation p.K65R 0.24 deleterious(0.01) possibly_damaging(0.876) TCGA-VQ-A8P3-01 22 33254085 33254085 A C TIMP3 Missense_Mutation p.K133T 0.29 deleterious(0) possibly_damaging(0.634) TCGA-VQ-A8P3-01 22 35478520 35478520 A C ISX Missense_Mutation p.K80T 0.27 deleterious(0.01) benign(0.209) TCGA-VQ-A8P3-01 2 107041486 107041486 A C RGPD3 Silent p.T979T 0.18 TCGA-VQ-A8P3-01 2 120848034 120848034 G A EPB41L5 Missense_Mutation p.V329I 0.32 deleterious(0.04) possibly_damaging(0.487) TCGA-VQ-A8P3-01 2 136616891 136616891 C G MCM6 Missense_Mutation p.A448P 0.33 deleterious(0) probably_damaging(1) TCGA-VQ-A8P3-01 2 141072656 141072656 T G LRP1B Missense_Mutation p.K4218T 0.25 benign(0.403) TCGA-VQ-A8P3-01 2 164467402 164467402 T C FIGN Missense_Mutation p.S314G 0.20 tolerated(0.76) benign(0.084) TCGA-VQ-A8P3-01 2 166773870 166773870 C T TTC21B Missense_Mutation p.G599E 0.22 tolerated(0.25) benign(0.005) TCGA-VQ-A8P3-01 2 166901750 166901750 A C SCN1A Missense_Mutation p.L489V 0.15 deleterious(0.03) possibly_damaging(0.525) TCGA-VQ-A8P3-01 2 168101037 168101037 A G XIRP2 Silent p.Q1045Q 0.27 TCGA-VQ-A8P3-01 2 168110543 168110543 A C XIRP2 Missense_Mutation p.E3519D 0.32 benign(0.078) TCGA-VQ-A8P3-01 2 176959436 176959436 A G HOXD13 Missense_Mutation p.K337R 0.10 deleterious(0.05) benign(0.233) TCGA-VQ-A8P3-01 2 176981552 176981552 C A HOXD10 5'UTR 0.07 TCGA-VQ-A8P3-01 2 176982146 176982146 G A HOXD10 Silent p.L195L 0.26 TCGA-VQ-A8P3-01 2 179423165 179423165 C T TTN Silent p.E29007E 0.18 TCGA-VQ-A8P3-01 2 179600497 179600497 T C TTN Silent p.K4892K 0.08 TCGA-VQ-A8P3-01 2 179616598 179616598 A C TTN Intron 0.30 TCGA-VQ-A8P3-01 2 190328422 190328422 A G WDR75 Missense_Mutation p.I314V 0.17 tolerated(0.07) benign(0.061) TCGA-VQ-A8P3-01 2 198257816 198257816 C T SF3B1 Silent p.L1212L 0.25 TCGA-VQ-A8P3-01 2 198359434 198359434 T C HSPD1 Missense_Mutation p.I185V 0.10 tolerated(0.06) benign(0.046) TCGA-VQ-A8P3-01 2 198359456 198359456 G C HSPD1 Missense_Mutation p.N177K 0.10 deleterious(0) probably_damaging(1) TCGA-VQ-A8P3-01 2 210559324 210559324 A G MAP2 Silent p.L810L 0.29 TCGA-VQ-A8P3-01 2 211082804 211082804 T G ACADL Missense_Mutation p.S86R 0.18 deleterious(0.03) probably_damaging(0.932) TCGA-VQ-A8P3-01 2 211542621 211542621 T G CPS1 Missense_Mutation p.L1478R 0.29 deleterious(0) probably_damaging(0.929) TCGA-VQ-A8P3-01 2 212251789 212251789 T G ERBB4 Missense_Mutation p.E1090D 0.25 tolerated(0.3) benign(0.2) TCGA-VQ-A8P3-01 2 215013957 215013957 A G SPAG16 Missense_Mutation p.S563G 0.28 tolerated(0.08) possibly_damaging(0.632) TCGA-VQ-A8P3-01 2 215440552 215440552 T G VWC2L 3'UTR 0.31 TCGA-VQ-A8P3-01 2 215910676 215910676 A C ABCA12 Missense_Mutation p.F253V 0.27 tolerated(0.31) benign(0.001) TCGA-VQ-A8P3-01 2 216245696 216245696 A G FN1 Missense_Mutation p.S1758P 0.13 deleterious(0.01) probably_damaging(0.998) TCGA-VQ-A8P3-01 2 231940264 231940264 T G PSMD1 Missense_Mutation p.F307L 0.36 tolerated(0.34) benign(0) TCGA-VQ-A8P3-01 2 233244591 233244591 G A ALPP Missense_Mutation p.R201H 0.31 tolerated(0.14) benign(0.024) TCGA-VQ-A8P3-01 2 24433702 24433702 A C ITSN2 Missense_Mutation p.S1402A 0.25 deleterious(0.03) unknown(0) TCGA-VQ-A8P3-01 2 69093206 69093206 G T BMP10 Missense_Mutation p.Q278K 0.23 tolerated(0.19) benign(0.002) TCGA-VQ-A8P3-01 2 6991608 6991608 A C CMPK2 Missense_Mutation p.L400R 0.28 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P3-01 2 89399366 89399366 A G IGKV1-16 Missense_Mutation p.Y113H 0.20 tolerated(0.32) benign(0.002) TCGA-VQ-A8P3-01 2 89399371 89399371 T A IGKV1-16 Missense_Mutation p.Q111L 0.20 tolerated(0.25) benign(0.008) TCGA-VQ-A8P3-01 2 89399373 89399373 G A IGKV1-16 Silent p.C110C 0.22 TCGA-VQ-A8P3-01 2 90078123 90078123 T G IGKV3D-20 Missense_Mutation p.L54V 0.34 tolerated(0.09) benign(0.076) TCGA-VQ-A8P3-01 3 112968629 112968629 T G BOC 5'UTR 0.14 TCGA-VQ-A8P3-01 3 115439736 115439736 A G GAP43 3'UTR 0.35 TCGA-VQ-A8P3-01 3 12623307 12623308 - A MKRN2 Frame_Shift_Ins p.A326Sfs*3 0.28 TCGA-VQ-A8P3-01 3 129252539 129252539 C T RHO Missense_Mutation p.T342M 0.17 deleterious(0) probably_damaging(0.982) TCGA-VQ-A8P3-01 3 134327665 134327665 A C KY Missense_Mutation p.F306V 0.25 deleterious(0) probably_damaging(1) TCGA-VQ-A8P3-01 3 135720780 135720780 A G PPP2R3A Missense_Mutation p.K147R 0.24 tolerated_low_confidence(1) probably_damaging(0.98) TCGA-VQ-A8P3-01 3 151056209 151056209 T G P2RY12 Missense_Mutation p.K142T 0.31 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P3-01 3 151112482 151112482 A C MED12L Missense_Mutation p.T1848P 0.19 deleterious(0.03) possibly_damaging(0.502) TCGA-VQ-A8P3-01 3 164764701 164764701 A G SI Silent p.N605N 0.30 TCGA-VQ-A8P3-01 3 192053248 192053248 A G FGF12 Missense_Mutation p.F106L 0.32 tolerated(0.25) probably_damaging(0.969) TCGA-VQ-A8P3-01 3 2777925 2777925 T C CNTN4 Missense_Mutation p.F28L 0.27 deleterious(0.03) probably_damaging(0.96) TCGA-VQ-A8P3-01 3 32995241 32995241 G C CCR4 Silent p.L109L 0.26 TCGA-VQ-A8P3-01 3 38797370 38797370 T A SCN10A Missense_Mutation p.E457V 0.26 deleterious(0.03) benign(0.005) TCGA-VQ-A8P3-01 3 38835308 38835308 T G SCN10A Missense_Mutation p.K65T 0.35 tolerated(0.63) benign(0.011) TCGA-VQ-A8P3-01 3 3887102 3887102 G T LRRN1 Silent p.L259L 0.27 TCGA-VQ-A8P3-01 3 52730257 52730257 A T GLT8D1 Silent p.I175I 0.21 TCGA-VQ-A8P3-01 3 58124035 58124035 A T FLNB Missense_Mutation p.T1661S 0.24 tolerated(0.12) possibly_damaging(0.752) TCGA-VQ-A8P3-01 3 98568438 98568438 T G DCBLD2 Missense_Mutation p.K146N 0.13 tolerated(0.11) possibly_damaging(0.821) TCGA-VQ-A8P3-01 4 123844274 123844274 C T SPATA5 5'UTR 0.31 TCGA-VQ-A8P3-01 4 1244348 1244348 G T CTBP1 5'Flank 0.20 TCGA-VQ-A8P3-01 4 126411985 126411985 A C FAT4 Missense_Mutation p.S4670R 0.27 possibly_damaging(0.567) TCGA-VQ-A8P3-01 4 155508044 155508044 A C FGA Silent p.S179S 0.28 TCGA-VQ-A8P3-01 4 156831306 156831306 A C TDO2 Missense_Mutation p.E187D 0.42 tolerated(0.56) benign(0.005) TCGA-VQ-A8P3-01 4 169194500 169194500 T A DDX60 Missense_Mutation p.N835I 0.25 tolerated(0.17) benign(0.008) TCGA-VQ-A8P3-01 4 20525678 20525678 A G SLIT2 Missense_Mutation p.K439R 0.30 tolerated(0.51) probably_damaging(0.964) TCGA-VQ-A8P3-01 4 20598274 20598274 T G SLIT2 Missense_Mutation p.L1186R 0.21 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P3-01 4 3318308 3318308 C T RGS12 Silent p.V137V 0.45 TCGA-VQ-A8P3-01 4 42895376 42895376 A C GRXCR1 Missense_Mutation p.E31D 0.22 deleterious(0.01) probably_damaging(0.99) TCGA-VQ-A8P3-01 4 46125855 46125855 A C GABRG1 Missense_Mutation p.L26V 0.16 tolerated(0.08) possibly_damaging(0.899) TCGA-VQ-A8P3-01 4 46314712 46314712 A C GABRA2 Missense_Mutation p.F93V 0.21 deleterious(0) probably_damaging(0.984) TCGA-VQ-A8P3-01 4 5721000 5721000 A T EVC Missense_Mutation p.K67M 0.27 deleterious(0) probably_damaging(0.911) TCGA-VQ-A8P3-01 4 5827233 5827233 A G CRMP1 Missense_Mutation p.F653L 0.24 deleterious(0) probably_damaging(0.993) TCGA-VQ-A8P3-01 4 69101977 69101977 A C TMPRSS11B Silent p.T44T 0.19 TCGA-VQ-A8P3-01 4 71507830 71507830 A C ENAM Missense_Mutation p.E229D 0.32 deleterious(0) probably_damaging(1) TCGA-VQ-A8P3-01 4 72338536 72338536 G A SLC4A4 Silent p.T584T 0.26 TCGA-VQ-A8P3-01 4 86643070 86643070 T G ARHGAP24 Silent p.S71S 0.31 TCGA-VQ-A8P3-01 4 88902640 88902640 A C SPP1 Missense_Mutation p.K77T 0.21 tolerated(0.52) probably_damaging(0.932) TCGA-VQ-A8P3-01 5 100222285 100222285 A G ST8SIA4 Silent p.L89L 0.24 TCGA-VQ-A8P3-01 5 121787163 121787163 A C SNCAIP Missense_Mutation p.N874T 0.33 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8P3-01 5 128862050 128862050 A G ADAMTS19 Silent p.Q323Q 0.06 TCGA-VQ-A8P3-01 5 13871771 13871771 G C DNAH5 Missense_Mutation p.S1167C 0.21 possibly_damaging(0.7) TCGA-VQ-A8P3-01 5 140201398 140201398 T A PCDHA5 Missense_Mutation p.L13H 0.29 tolerated_low_confidence(0.06) possibly_damaging(0.712) TCGA-VQ-A8P3-01 5 140432388 140432388 G A PCDHB1 Missense_Mutation p.V445I 0.28 tolerated(0.38) benign(0.002) TCGA-VQ-A8P3-01 5 140474589 140474590 - A PCDHB2 Frame_Shift_Ins p.M75Nfs*7 0.27 TCGA-VQ-A8P3-01 5 140595902 140595902 T A PCDHB13 Missense_Mutation p.L736H 0.15 deleterious_low_confidence(0) probably_damaging(0.945) TCGA-VQ-A8P3-01 5 140724572 140724572 A G PCDHGA3 Silent p.G324G 0.16 TCGA-VQ-A8P3-01 5 145719240 145719240 A T POU4F3 Missense_Mutation p.S84C 0.25 deleterious(0.02) benign(0.338) TCGA-VQ-A8P3-01 5 159776530 159776530 T C C1QTNF2 Missense_Mutation p.K213R 0.30 tolerated(0.45) benign(0.155) TCGA-VQ-A8P3-01 5 179229075 179229075 C A MGAT4B Nonsense_Mutation p.E13* 0.40 TCGA-VQ-A8P3-01 5 24487941 24487941 A C CDH10 Missense_Mutation p.L733R 0.07 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8P3-01 5 35740142 35740142 A C SPEF2 Missense_Mutation p.E1062A 0.26 deleterious(0.01) benign(0.039) TCGA-VQ-A8P3-01 5 37183697 37183697 T G C5orf42 Missense_Mutation p.K1529T 0.22 tolerated(0.21) possibly_damaging(0.503) TCGA-VQ-A8P3-01 5 41015505 41015505 T G MROH2B Missense_Mutation p.K987T 0.17 tolerated(0.17) benign(0.047) TCGA-VQ-A8P3-01 5 52780843 52780843 A G FST Silent p.E246E 0.21 TCGA-VQ-A8P3-01 5 54404031 54404031 A C GZMA Missense_Mutation p.T146P 0.27 deleterious(0) possibly_damaging(0.771) TCGA-VQ-A8P3-01 5 68524126 68524126 G C MRPS36 Missense_Mutation p.G69A 0.22 deleterious(0.02) possibly_damaging(0.857) TCGA-VQ-A8P3-01 5 75427574 75427574 A C SV2C 5'UTR 0.14 TCGA-VQ-A8P3-01 5 94994526 94994526 C A SPATA9 Missense_Mutation p.C189F 0.21 tolerated_low_confidence(0.43) benign(0) TCGA-VQ-A8P3-01 6 127768231 127768231 A G KIAA0408 Silent p.C411C 0.21 TCGA-VQ-A8P3-01 6 147704086 147704086 T C STXBP5 Silent p.T1122T 0.17 TCGA-VQ-A8P3-01 6 152639241 152639241 T C SYNE1 Missense_Mutation p.E5516G 0.27 possibly_damaging(0.543) TCGA-VQ-A8P3-01 6 152652576 152652576 A C SYNE1 Missense_Mutation p.L4415R 0.24 probably_damaging(0.999) TCGA-VQ-A8P3-01 6 152776664 152776664 T G SYNE1 Missense_Mutation p.K930T 0.24 possibly_damaging(0.703) TCGA-VQ-A8P3-01 6 24528368 24528368 T C ALDH5A1 Silent p.T452T 0.07 TCGA-VQ-A8P3-01 6 28543865 28543865 T G SCAND3 Missense_Mutation p.N206T 0.08 tolerated_low_confidence(0.26) benign(0.001) TCGA-VQ-A8P3-01 6 30164337 30164337 C T TRIM26 Missense_Mutation p.E241K 0.22 deleterious(0.03) possibly_damaging(0.893) TCGA-VQ-A8P3-01 6 51497461 51497461 T G PKHD1 Missense_Mutation p.K3856T 0.25 tolerated(0.12) benign(0.012) TCGA-VQ-A8P3-01 6 66115119 66115119 T C EYS Missense_Mutation p.E335G 0.15 deleterious(0.01) possibly_damaging(0.765) TCGA-VQ-A8P3-01 6 72011416 72011416 T C OGFRL1 Silent p.T340T 0.26 TCGA-VQ-A8P3-01 6 75858074 75858074 T G COL12A1 Missense_Mutation p.E1429D 0.25 possibly_damaging(0.497) TCGA-VQ-A8P3-01 6 87725104 87725104 A G HTR1E Missense_Mutation p.T18A 0.35 tolerated(0.63) benign(0.001) TCGA-VQ-A8P3-01 6 87795473 87795473 T G CGA 3'UTR 0.18 TCGA-VQ-A8P3-01 7 120629776 120629776 C T CPED1 Missense_Mutation p.T34I 0.37 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P3-01 7 123101560 123101560 G A IQUB Missense_Mutation p.R620C 0.22 tolerated(0.09) benign(0.057) TCGA-VQ-A8P3-01 7 123143346 123143346 T G IQUB Missense_Mutation p.I202L 0.23 tolerated(0.39) benign(0.058) TCGA-VQ-A8P3-01 7 124503485 124503485 A T POT1 Missense_Mutation p.D155E 0.26 tolerated(0.12) benign(0.015) TCGA-VQ-A8P3-01 7 128850319 128850319 A G SMO Missense_Mutation p.T528A 0.34 tolerated(0.5) benign(0.004) TCGA-VQ-A8P3-01 7 130137828 130137828 T G MEST Missense_Mutation p.L105V 0.27 tolerated(0.12) benign(0.327) TCGA-VQ-A8P3-01 7 134225891 134225891 A C AKR1B10 3'UTR 0.28 TCGA-VQ-A8P3-01 7 134618305 134618305 A C CALD1 Missense_Mutation p.K262T 0.34 tolerated_low_confidence(0.1) unknown(0) TCGA-VQ-A8P3-01 7 135262716 135262716 C T NUP205 Missense_Mutation p.A274V 0.24 deleterious(0) probably_damaging(0.955) TCGA-VQ-A8P3-01 7 136700565 136700565 A G CHRM2 Missense_Mutation p.E318G 0.19 tolerated(0.33) benign(0.004) TCGA-VQ-A8P3-01 7 142197809 142197809 C A TRBV11-2 RNA 0.25 TCGA-VQ-A8P3-01 7 142458464 142458464 T G PRSS1 Missense_Mutation p.N33K 0.10 deleterious(0.02) benign(0.018) TCGA-VQ-A8P3-01 7 142479967 142479967 T G PRSS3P2 RNA 0.09 TCGA-VQ-A8P3-01 7 150217056 150217056 C T GIMAP7 5'UTR 0.28 TCGA-VQ-A8P3-01 7 31690798 31690798 A C CCDC129 Missense_Mutation p.S902R 0.26 deleterious(0) probably_damaging(0.979) TCGA-VQ-A8P3-01 7 37252963 37252963 T C ELMO1 Missense_Mutation p.T311A 0.40 tolerated(0.06) probably_damaging(0.999) TCGA-VQ-A8P3-01 7 37264616 37264616 T A ELMO1 Missense_Mutation p.K190M 0.25 tolerated(0.22) possibly_damaging(0.905) TCGA-VQ-A8P3-01 7 38514952 38514952 T C AMPH Missense_Mutation p.E190G 0.19 deleterious(0) probably_damaging(1) TCGA-VQ-A8P3-01 7 54610369 54610369 T G VSTM2A 5'UTR 0.26 TCGA-VQ-A8P3-01 7 63709456 63709456 A G ZNF679 5'UTR 0.25 TCGA-VQ-A8P3-01 7 70597937 70597937 A C WBSCR17 Missense_Mutation p.N50T 0.34 tolerated_low_confidence(0.54) probably_damaging(0.956) TCGA-VQ-A8P3-01 7 87035742 87035742 A G ABCB4 Silent p.S1123S 0.25 TCGA-VQ-A8P3-01 7 90547021 90547021 T G CDK14 Missense_Mutation p.L252V 0.23 deleterious(0) probably_damaging(1) TCGA-VQ-A8P3-01 7 92762914 92762914 T C SAMD9L Missense_Mutation p.S791G 0.17 tolerated(0.13) benign(0.008) TCGA-VQ-A8P3-01 7 96651485 96651485 C T DLX5 Intron 0.19 TCGA-VQ-A8P3-01 8 105361682 105361682 T C DCSTAMP Missense_Mutation p.L301P 0.22 deleterious(0) probably_damaging(0.976) TCGA-VQ-A8P3-01 8 110477043 110477043 A C PKHD1L1 Missense_Mutation p.E2661A 0.36 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8P3-01 8 113650961 113650961 A G CSMD3 Missense_Mutation p.S1164P 0.40 deleterious(0) probably_damaging(0.989) TCGA-VQ-A8P3-01 8 130788446 130788446 T G GSDMC Missense_Mutation p.E102D 0.34 tolerated(0.06) benign(0.259) TCGA-VQ-A8P3-01 8 133931624 133931624 A G TG Missense_Mutation p.K1461R 0.33 tolerated(0.14) benign(0.081) TCGA-VQ-A8P3-01 8 135614890 135614890 A C ZFAT Missense_Mutation p.F358V 0.18 tolerated(0.06) probably_damaging(0.977) TCGA-VQ-A8P3-01 8 144990513 144990513 G C PLEC Silent p.G4629G 0.19 TCGA-VQ-A8P3-01 8 3063037 3063037 G - CSMD1 Frame_Shift_Del p.P1658Qfs*17 0.14 TCGA-VQ-A8P3-01 8 39624760 39624760 A C ADAM2 Missense_Mutation p.L408R 0.22 tolerated(0.68) benign(0.008) TCGA-VQ-A8P3-01 8 55533945 55533945 A G RP1 Missense_Mutation p.H140R 0.33 tolerated(0.67) benign(0) TCGA-VQ-A8P3-01 8 70594465 70594465 T G SLCO5A1 Missense_Mutation p.N579T 0.37 deleterious(0.01) possibly_damaging(0.475) TCGA-VQ-A8P3-01 8 71646748 71646748 T G XKR9 3'UTR 0.25 TCGA-VQ-A8P3-01 8 75756291 75756291 T G PI15 Missense_Mutation p.L117V 0.22 deleterious(0.02) probably_damaging(0.998) TCGA-VQ-A8P3-01 8 91094295 91094295 A G CALB1 Silent p.L39L 0.23 TCGA-VQ-A8P3-01 8 97614658 97614658 A G SDC2 Missense_Mutation p.T70A 0.04 tolerated(0.05) benign(0.128) TCGA-VQ-A8P3-01 9 101065694 101065694 C G GABBR2 Silent p.L747L 0.17 TCGA-VQ-A8P3-01 9 102590377 102590377 C T NR4A3 Missense_Mutation p.A29V 0.29 deleterious(0.04) benign(0.049) TCGA-VQ-A8P3-01 9 107289081 107289081 T G OR13C4 Missense_Mutation p.N137T 0.23 tolerated(0.06) benign(0.04) TCGA-VQ-A8P3-01 9 113171134 113171134 C T SVEP1 Missense_Mutation p.R2249H 0.27 probably_damaging(1) TCGA-VQ-A8P3-01 9 121971043 121971043 T G BRINP1 Missense_Mutation p.S367R 0.25 deleterious(0) probably_damaging(0.944) TCGA-VQ-A8P3-01 9 125424499 125424499 T C OR1L1 Missense_Mutation p.C169R 0.15 deleterious(0) probably_damaging(1) TCGA-VQ-A8P3-01 9 128003154 128003154 A G HSPA5 Missense_Mutation p.I52T 0.18 deleterious_low_confidence(0) possibly_damaging(0.723) TCGA-VQ-A8P3-01 9 128003158 128003158 C A HSPA5 Nonsense_Mutation p.E51* 0.19 TCGA-VQ-A8P3-01 9 132687435 132687435 T A FNBP1 Missense_Mutation p.D264V 0.19 deleterious(0.04) probably_damaging(0.988) TCGA-VQ-A8P3-01 9 19786174 19786174 A C SLC24A2 Missense_Mutation p.L231V 0.22 deleterious(0) probably_damaging(0.992) TCGA-VQ-A8P3-01 9 19786622 19786622 A C SLC24A2 Silent p.G81G 0.19 TCGA-VQ-A8P3-01 9 27173283 27173283 A C TEK Missense_Mutation p.K275T 0.23 deleterious(0.01) benign(0.102) TCGA-VQ-A8P3-01 9 2718543 2718543 C G KCNV2 Silent p.T268T 0.35 TCGA-VQ-A8P3-01 9 27949671 27949671 C A LINGO2 Silent p.L333L 0.33 TCGA-VQ-A8P3-01 9 27949672 27949672 A G LINGO2 Missense_Mutation p.L333P 0.33 deleterious(0) probably_damaging(1) TCGA-VQ-A8P3-01 9 79325468 79325468 T C PRUNE2 Silent p.Q574Q 0.16 TCGA-VQ-A8P3-01 9 82323109 82323109 A G TLE4 Missense_Mutation p.N338S 0.27 tolerated(1) benign(0) TCGA-VQ-A8P3-01 X 104440310 104440310 A C IL1RAPL2 Missense_Mutation p.N79T 0.61 tolerated(0.73) benign(0.074) TCGA-VQ-A8P3-01 X 125685200 125685200 T G DCAF12L1 Nonstop_Mutation p.*464Yext*2 0.54 TCGA-VQ-A8P3-01 X 135314153 135314153 C T MAP7D3 Silent p.A321A 0.60 TCGA-VQ-A8P3-01 X 140969357 140969357 A C MAGEC3 Missense_Mutation p.K228N 0.56 deleterious(0.04) possibly_damaging(0.728) TCGA-VQ-A8P3-01 X 148037276 148037276 A C AFF2 Missense_Mutation p.E567D 0.54 tolerated(0.11) benign(0.04) TCGA-VQ-A8P3-01 X 151870025 151870025 T G MAGEA6 Missense_Mutation p.F239V 0.57 deleterious(0.01) benign(0.201) TCGA-VQ-A8P3-01 X 18183076 18183076 T C BEND2 3'UTR 0.38 TCGA-VQ-A8P3-01 X 30269111 30269111 A C MAGEB1 Missense_Mutation p.E167D 0.50 deleterious(0) probably_damaging(0.992) TCGA-VQ-A8P3-01 X 30322648 30322648 T A NR0B1 3'UTR 0.38 TCGA-VQ-A8P3-01 X 49032327 49032327 G T PRICKLE3 Missense_Mutation p.H515N 0.73 tolerated_low_confidence(0.52) benign(0.007) TCGA-VQ-A8P3-01 X 66765718 66765718 T G AR Missense_Mutation p.S244A 0.56 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-VQ-A8P3-01 X 99551588 99551588 C T PCDH19 Missense_Mutation p.S1045N 0.55 deleterious_low_confidence(0) possibly_damaging(0.827) TCGA-VQ-A8P3-01 Y 4925361 4925361 A C PCDH11Y Missense_Mutation p.D166A 0.21 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P5-01 10 103919251 103919251 G A NOLC1 Missense_Mutation p.R262Q 0.17 tolerated_low_confidence(1) benign(0) TCGA-VQ-A8P5-01 10 104130469 104130469 G A GBF1 Missense_Mutation p.R1170H 0.16 deleterious(0) probably_damaging(1) TCGA-VQ-A8P5-01 10 117061384 117061384 G A ATRNL1 Silent p.A883A 0.42 TCGA-VQ-A8P5-01 10 118220484 118220484 A G PNLIPRP3 Missense_Mutation p.D191G 0.39 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8P5-01 10 134158067 134158069 GTT - LRRC27 In_Frame_Del p.V157del 0.18 TCGA-VQ-A8P5-01 10 16982151 16982151 G T CUBN Silent p.R1810R 0.11 TCGA-VQ-A8P5-01 10 23257367 23257367 C T ARMC3 Missense_Mutation p.P289S 0.13 deleterious(0.03) probably_damaging(0.958) TCGA-VQ-A8P5-01 10 28270420 28270420 T G ARMC4 Missense_Mutation p.K304T 0.16 tolerated(0.43) benign(0.001) TCGA-VQ-A8P5-01 10 3824031 3824031 G A KLF6 Nonsense_Mutation p.Q160* 0.21 TCGA-VQ-A8P5-01 10 43615045 43615045 G A RET Missense_Mutation p.R820H 0.08 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P5-01 10 46135355 46135355 G A ZFAND4 Missense_Mutation p.S209F 0.14 deleterious(0) benign(0.155) TCGA-VQ-A8P5-01 10 47087951 47087951 C T NPY4R 3'UTR 0.12 TCGA-VQ-A8P5-01 10 49482589 49482589 C T FRMPD2 Missense_Mutation p.A8T 0.19 tolerated_low_confidence(0.4) benign(0.001) TCGA-VQ-A8P5-01 10 49661456 49661456 T G ARHGAP22 Missense_Mutation p.E309D 0.39 deleterious(0) possibly_damaging(0.624) TCGA-VQ-A8P5-01 10 55782905 55782905 T G PCDH15 Missense_Mutation p.N758T 0.13 tolerated(0.13) probably_damaging(0.98) TCGA-VQ-A8P5-01 10 60556250 60556250 A G BICC1 Missense_Mutation p.I444V 0.11 tolerated(0.23) probably_damaging(0.965) TCGA-VQ-A8P5-01 10 60556253 60556253 T G BICC1 Missense_Mutation p.L445V 0.11 tolerated(0.06) probably_damaging(0.984) TCGA-VQ-A8P5-01 10 79753124 79753124 C T POLR3A Missense_Mutation p.R873Q 0.11 deleterious(0) probably_damaging(1) TCGA-VQ-A8P5-01 10 81192338 81192338 T A ZCCHC24 Silent p.G141G 0.38 TCGA-VQ-A8P5-01 10 85984164 85984164 G A LRIT2 Nonsense_Mutation p.R273* 0.19 TCGA-VQ-A8P5-01 11 20805369 20805369 G T NELL1 Nonsense_Mutation p.E110* 0.06 TCGA-VQ-A8P5-01 11 21596590 21596590 G A NELL1 3'UTR 0.36 TCGA-VQ-A8P5-01 11 49831413 49831413 A C RP11-707M1.1 RNA 0.18 TCGA-VQ-A8P5-01 11 5153403 5153403 A C OR52A5 Missense_Mutation p.L157R 0.50 deleterious(0.01) probably_damaging(0.976) TCGA-VQ-A8P5-01 11 55110990 55110990 T G OR4A16 Missense_Mutation p.L105R 0.11 deleterious_low_confidence(0) benign(0.321) TCGA-VQ-A8P5-01 11 55578959 55578959 G C OR5L1 Missense_Mutation p.C6S 0.16 tolerated(0.46) probably_damaging(0.995) TCGA-VQ-A8P5-01 11 55762088 55762088 T A OR5F1 Missense_Mutation p.N5I 0.31 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P5-01 11 55926995 55926995 A C OR8K5 Missense_Mutation p.F267V 0.21 deleterious_low_confidence(0) benign(0.109) TCGA-VQ-A8P5-01 11 62286867 62286867 C T AHNAK Missense_Mutation p.E5008K 0.08 possibly_damaging(0.805) TCGA-VQ-A8P5-01 11 62397383 62397383 G A GANAB Missense_Mutation p.S569F 0.27 deleterious(0) probably_damaging(1) TCGA-VQ-A8P5-01 11 93454550 93454550 T A KIAA1731 Nonsense_Mutation p.L1941* 0.55 TCGA-VQ-A8P5-01 11 94731867 94731867 T G KDM4D Missense_Mutation p.I444S 0.11 tolerated_low_confidence(0.25) benign(0) TCGA-VQ-A8P5-01 11 9754141 9754141 C T SWAP70 Missense_Mutation p.R322C 0.21 deleterious(0) possibly_damaging(0.621) TCGA-VQ-A8P5-01 12 106633010 106633010 G - CKAP4 Frame_Shift_Del p.S534Ffs*3 0.23 TCGA-VQ-A8P5-01 12 10958767 10958767 C A TAS2R8 Missense_Mutation p.E271D 0.27 tolerated(0.34) possibly_damaging(0.599) TCGA-VQ-A8P5-01 12 120934303 120934303 C G DYNLL1 Missense_Mutation p.Q27E 0.04 tolerated(0.3) benign(0.005) TCGA-VQ-A8P5-01 12 132425881 132425881 G C PUS1 Missense_Mutation p.D197H 0.27 deleterious(0) possibly_damaging(0.832) TCGA-VQ-A8P5-01 12 15261953 15261953 A C RERG 3'UTR 0.38 TCGA-VQ-A8P5-01 12 21679829 21679829 A G C12orf39 Missense_Mutation p.S6G 0.34 tolerated(0.2) benign(0.003) TCGA-VQ-A8P5-01 12 28459831 28459831 G A CCDC91 Missense_Mutation p.E142K 0.24 deleterious(0.03) probably_damaging(0.997) TCGA-VQ-A8P5-01 12 40001459 40001459 C T ABCD2 Missense_Mutation p.R393Q 0.28 deleterious(0) possibly_damaging(0.82) TCGA-VQ-A8P5-01 12 50232823 50232823 T C BCDIN3D Intron 0.31 TCGA-VQ-A8P5-01 12 53876516 53876516 G A MAP3K12 Missense_Mutation p.P691S 0.14 tolerated_low_confidence(0.4) benign(0.079) TCGA-VQ-A8P5-01 12 58350470 58350470 A G XRCC6BP1 Missense_Mutation p.T180A 0.28 tolerated(0.25) benign(0.034) TCGA-VQ-A8P5-01 12 70724142 70724142 G A CNOT2 Silent p.R154R 0.30 TCGA-VQ-A8P5-01 12 9303324 9303324 T G PZP Missense_Mutation p.S1434R 0.32 tolerated(0.05) possibly_damaging(0.736) TCGA-VQ-A8P5-01 12 96416010 96416010 A C LTA4H Missense_Mutation p.L167R 0.09 deleterious(0) probably_damaging(0.989) TCGA-VQ-A8P5-01 13 23908877 23908877 G C SACS Silent p.T3046T 0.45 TCGA-VQ-A8P5-01 13 24465348 24465348 A G C1QTNF9B 3'Flank 0.51 TCGA-VQ-A8P5-01 13 25671754 25671754 C T PABPC3 Missense_Mutation p.T473M 0.07 tolerated(0.1) benign(0.018) TCGA-VQ-A8P5-01 13 36888507 36888507 T G SPG20 Missense_Mutation p.K447T 0.19 deleterious(0.03) benign(0.155) TCGA-VQ-A8P5-01 13 42874648 42874648 C T AKAP11 Missense_Mutation p.S589L 0.14 deleterious(0) possibly_damaging(0.89) TCGA-VQ-A8P5-01 13 47466703 47466703 G A HTR2A Silent p.S145S 0.19 TCGA-VQ-A8P5-01 13 58299162 58299162 T C PCDH17 Silent p.L1072L 0.20 TCGA-VQ-A8P5-01 14 100615892 100615892 C T DEGS2 Missense_Mutation p.V80M 0.33 deleterious(0.03) possibly_damaging(0.824) TCGA-VQ-A8P5-01 14 36125037 36125037 C T RALGAPA1 Silent p.L1318L 0.29 TCGA-VQ-A8P5-01 14 45665730 45665730 A G FANCM Missense_Mutation p.E1899G 0.22 deleterious(0) probably_damaging(1) TCGA-VQ-A8P5-01 14 47120946 47120946 A G RPL10L 5'UTR 0.18 TCGA-VQ-A8P5-01 14 47315003 47315003 T G MDGA2 Missense_Mutation p.E985D 0.28 tolerated(0.33) probably_damaging(0.993) TCGA-VQ-A8P5-01 14 63174663 63174663 G T KCNH5 Missense_Mutation p.P844T 0.24 tolerated_low_confidence(1) benign(0.001) TCGA-VQ-A8P5-01 14 63447927 63447927 G A KCNH5 Missense_Mutation p.T202M 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-VQ-A8P5-01 14 75485655 75485655 G A MLH3 Silent p.S1373S 0.37 TCGA-VQ-A8P5-01 14 75570558 75570558 A T NEK9 Missense_Mutation p.I573N 0.28 deleterious(0.02) possibly_damaging(0.642) TCGA-VQ-A8P5-01 14 80963784 80963784 A C CEP128 3'UTR 0.27 TCGA-VQ-A8P5-01 14 81046727 81046727 T C CEP128 Silent p.G949G 0.18 TCGA-VQ-A8P5-01 14 99870637 99870637 A T SETD3 Missense_Mutation p.F368I 0.25 deleterious(0) possibly_damaging(0.781) TCGA-VQ-A8P5-01 15 25925396 25925396 C T ATP10A Silent p.L1246L 0.21 TCGA-VQ-A8P5-01 15 34640630 34640630 G A NUTM1 Silent p.P159P 0.17 TCGA-VQ-A8P5-01 15 44876228 44876228 G A SPG11 Missense_Mutation p.R1884C 0.16 tolerated(0.29) benign(0.193) TCGA-VQ-A8P5-01 15 49869004 49869004 A C FAM227B Silent p.T160T 0.28 TCGA-VQ-A8P5-01 15 71124522 71124522 C T LARP6 Missense_Mutation p.G449S 0.14 tolerated(0.75) benign(0.007) TCGA-VQ-A8P5-01 15 72533751 72533751 G A PARP6 3'UTR 0.18 TCGA-VQ-A8P5-01 15 74622620 74622620 C T CCDC33 Missense_Mutation p.R461C 0.39 deleterious(0.04) possibly_damaging(0.764) TCGA-VQ-A8P5-01 15 75109028 75109028 C T LMAN1L Missense_Mutation p.P165L 0.17 tolerated(0.69) benign(0.002) TCGA-VQ-A8P5-01 15 78921917 78921917 C T CHRNB4 Missense_Mutation p.V244M 0.14 tolerated(0.08) possibly_damaging(0.898) TCGA-VQ-A8P5-01 15 83218345 83218345 C A CPEB1 Missense_Mutation p.D422Y 0.14 deleterious(0.01) probably_damaging(0.991) TCGA-VQ-A8P5-01 15 88522637 88522637 T G NTRK3 Intron 0.21 TCGA-VQ-A8P5-01 16 129490 129490 G A MPG Missense_Mutation p.D36N 0.14 deleterious_low_confidence(0.01) benign(0.047) TCGA-VQ-A8P5-01 16 19883970 19883970 G A GPRC5B Silent p.G66G 0.12 TCGA-VQ-A8P5-01 16 20331792 20331792 A G GP2 Missense_Mutation p.V220A 0.28 deleterious(0.01) benign(0.011) TCGA-VQ-A8P5-01 16 24104215 24104215 G T PRKCB Missense_Mutation p.K211N 0.15 deleterious(0.01) possibly_damaging(0.813) TCGA-VQ-A8P5-01 16 24105500 24105500 G A PRKCB Missense_Mutation p.D235N 0.12 deleterious(0.01) possibly_damaging(0.891) TCGA-VQ-A8P5-01 16 24105513 24105513 G C PRKCB Missense_Mutation p.R239T 0.12 deleterious(0.02) possibly_damaging(0.743) TCGA-VQ-A8P5-01 16 24105544 24105544 G C PRKCB Missense_Mutation p.L249F 0.14 tolerated(0.16) benign(0.012) TCGA-VQ-A8P5-01 16 27441398 27441398 G A IL21R Silent p.P2P 0.58 TCGA-VQ-A8P5-01 16 28618377 28618377 C T SULT1A1 Missense_Mutation p.A132T 0.14 deleterious(0.01) benign(0.354) TCGA-VQ-A8P5-01 16 29997691 29997691 C G TAOK2 Missense_Mutation p.R700G 0.45 deleterious(0) possibly_damaging(0.532) TCGA-VQ-A8P5-01 16 31473784 31473784 G A ARMC5 Missense_Mutation p.A306T 0.15 deleterious(0.01) possibly_damaging(0.898) TCGA-VQ-A8P5-01 16 58293794 58293797 TCTC - CCDC113 Frame_Shift_Del p.L196Kfs*11 0.25 TCGA-VQ-A8P5-01 16 86612510 86612510 G T FOXL1 Missense_Mutation p.A61S 0.20 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P5-01 17 10435193 10435193 G A MYH2 Silent p.F818F 0.44 TCGA-VQ-A8P5-01 17 11687720 11687720 C T DNAH9 Missense_Mutation p.A2642V 0.48 benign(0.005) TCGA-VQ-A8P5-01 17 35310203 35310203 G A AATF Missense_Mutation p.E101K 0.07 tolerated(0.09) benign(0.007) TCGA-VQ-A8P5-01 17 36288261 36288261 A C TBC1D3F Missense_Mutation p.N116T 0.06 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8P5-01 17 37687162 37687162 C T CDK12 Nonsense_Mutation p.R1356* 0.03 TCGA-VQ-A8P5-01 17 37922359 37922359 T C IKZF3 Missense_Mutation p.H405R 0.03 deleterious(0.02) benign(0.04) TCGA-VQ-A8P5-01 17 38904433 38904433 G A KRT25 3'UTR 0.18 TCGA-VQ-A8P5-01 17 41008412 41008412 G A AOC3 Missense_Mutation p.E713K 0.23 deleterious(0.01) probably_damaging(0.985) TCGA-VQ-A8P5-01 17 4995177 4995177 A G ZFP3 Silent p.L126L 0.34 TCGA-VQ-A8P5-01 17 71027734 71027734 C T SLC39A11 Silent p.A89A 0.16 TCGA-VQ-A8P5-01 17 7577498 7577498 C A TP53 Splice_Site p.X261_splice 0.50 TCGA-VQ-A8P5-01 17 80399713 80399713 C T HEXDC Silent p.S430S 0.09 TCGA-VQ-A8P5-01 18 12311000 12311000 C T TUBB6 Silent p.S75S 0.35 TCGA-VQ-A8P5-01 18 14542797 14542797 C T POTEC Missense_Mutation p.V117M 0.27 deleterious(0.04) probably_damaging(0.971) TCGA-VQ-A8P5-01 18 29121243 29121243 C A DSG2 Missense_Mutation p.P656H 0.27 deleterious(0.01) probably_damaging(0.969) TCGA-VQ-A8P5-01 18 48575209 48575209 C T SMAD4 Nonsense_Mutation p.R135* 0.28 TCGA-VQ-A8P5-01 18 5419800 5419800 C G EPB41L3 Missense_Mutation p.K472N 0.18 deleterious(0.01) benign(0.033) TCGA-VQ-A8P5-01 18 8113546 8113546 T G PTPRM Nonsense_Mutation p.L640* 0.21 TCGA-VQ-A8P5-01 18 8244073 8244073 G A PTPRM Missense_Mutation p.R773Q 0.37 tolerated(0.52) benign(0.138) TCGA-VQ-A8P5-01 19 10226165 10226165 C G EIF3G Missense_Mutation p.E313Q 0.09 tolerated(0.05) possibly_damaging(0.543) TCGA-VQ-A8P5-01 19 10226446 10226446 C T EIF3G Missense_Mutation p.E252K 0.10 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8P5-01 19 22585671 22585671 T G ZNF98 Missense_Mutation p.K58T 0.23 deleterious(0.01) probably_damaging(0.932) TCGA-VQ-A8P5-01 19 34263570 34263570 G A CHST8 Missense_Mutation p.A293T 0.34 tolerated(0.32) benign(0.047) TCGA-VQ-A8P5-01 19 34929610 34929610 A G UBA2 Missense_Mutation p.T174A 0.61 deleterious(0) probably_damaging(0.981) TCGA-VQ-A8P5-01 19 42906918 42906918 G A LIPE Silent p.G936G 0.11 TCGA-VQ-A8P5-01 19 43439668 43439668 G C PSG7 Silent p.S106S 0.28 TCGA-VQ-A8P5-01 19 44514424 44514424 G A ZNF230 Missense_Mutation p.G78D 0.43 tolerated(0.67) benign(0.02) TCGA-VQ-A8P5-01 19 51021877 51021877 C T LRRC4B Missense_Mutation p.V365I 0.14 tolerated(0.23) benign(0.063) TCGA-VQ-A8P5-01 19 51503867 51503867 G A KLK8 Nonsense_Mutation p.R60* 0.28 TCGA-VQ-A8P5-01 19 52376268 52376268 A C ZNF577 Silent p.P325P 0.44 TCGA-VQ-A8P5-01 19 53668137 53668137 G A ZNF665 Missense_Mutation p.H536Y 0.55 deleterious(0) benign(0.338) TCGA-VQ-A8P5-01 19 53994461 53994461 A G ZNF813 Silent p.K325K 0.14 TCGA-VQ-A8P5-01 19 56228179 56228179 A G NLRP9 Silent p.L749L 0.14 TCGA-VQ-A8P5-01 19 57640313 57640313 A G USP29 Silent p.R90R 0.11 TCGA-VQ-A8P5-01 19 57640477 57640477 A C USP29 Missense_Mutation p.K145T 0.63 deleterious(0.03) benign(0.075) TCGA-VQ-A8P5-01 1 103449740 103449740 A G COL11A1 Missense_Mutation p.L837P 0.22 unknown(0) TCGA-VQ-A8P5-01 1 109649682 109649682 G C C1orf194 Missense_Mutation p.F75L 0.26 tolerated(0.89) benign(0.325) TCGA-VQ-A8P5-01 1 110563390 110563391 - GCCCA AHCYL1 Frame_Shift_Ins p.H503Qfs*7 0.23 TCGA-VQ-A8P5-01 1 12884884 12884884 C T PRAMEF11 Silent p.K409K 0.05 TCGA-VQ-A8P5-01 1 145282109 145282109 T C NOTCH2NL 3'UTR 0.09 TCGA-VQ-A8P5-01 1 150913830 150913830 G A SETDB1 Missense_Mutation p.R158K 0.47 tolerated_low_confidence(0.13) benign(0.135) TCGA-VQ-A8P5-01 1 152080697 152080697 C T TCHH Missense_Mutation p.D1666N 0.24 unknown(0) TCGA-VQ-A8P5-01 1 152283241 152283241 C A FLG Missense_Mutation p.G1374V 0.18 probably_damaging(0.988) TCGA-VQ-A8P5-01 1 152383313 152383313 G A CRNN Missense_Mutation p.A82V 0.19 deleterious(0) possibly_damaging(0.542) TCGA-VQ-A8P5-01 1 156875163 156875163 G A PEAR1 Missense_Mutation p.R85H 0.23 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P5-01 1 158549198 158549198 A C OR10X1 Silent p.A164A 0.23 TCGA-VQ-A8P5-01 1 171605237 171605237 G T MYOC Missense_Mutation p.T448N 0.07 deleterious(0) probably_damaging(0.962) TCGA-VQ-A8P5-01 1 177247881 177247881 C T BRINP2 Missense_Mutation p.R399C 0.19 deleterious(0.02) possibly_damaging(0.877) TCGA-VQ-A8P5-01 1 179520516 179520516 G A NPHS2 Missense_Mutation p.T315I 0.20 deleterious(0) benign(0.358) TCGA-VQ-A8P5-01 1 183521119 183521119 T G SMG7 Intron 0.17 TCGA-VQ-A8P5-01 1 185958651 185958651 A T HMCN1 Missense_Mutation p.K1027M 0.39 probably_damaging(0.999) TCGA-VQ-A8P5-01 1 198723430 198723430 C A PTPRC Missense_Mutation p.A1181D 0.16 deleterious(0) probably_damaging(0.967) TCGA-VQ-A8P5-01 1 201779152 201779152 G A NAV1 Missense_Mutation p.V1494M 0.19 deleterious(0.04) benign(0.043) TCGA-VQ-A8P5-01 1 204939785 204939785 G A NFASC Missense_Mutation p.A349T 0.32 deleterious(0) possibly_damaging(0.662) TCGA-VQ-A8P5-01 1 220791713 220791713 A G MARK1 Missense_Mutation p.N205S 0.21 deleterious(0.03) probably_damaging(0.989) TCGA-VQ-A8P5-01 1 224922328 224922328 C T CNIH3 Silent p.A125A 0.20 TCGA-VQ-A8P5-01 1 228511127 228511127 C T OBSCN Missense_Mutation p.R6115C 0.52 benign(0.014) TCGA-VQ-A8P5-01 1 242045311 242045311 A T EXO1 Missense_Mutation p.R735W 0.37 deleterious(0) possibly_damaging(0.765) TCGA-VQ-A8P5-01 1 247921135 247921135 C T OR1C1 Missense_Mutation p.V192I 0.14 tolerated(0.13) benign(0.013) TCGA-VQ-A8P5-01 1 26738027 26738027 G A LIN28A Missense_Mutation p.R61H 0.24 deleterious(0.02) possibly_damaging(0.687) TCGA-VQ-A8P5-01 1 67705912 67705912 A T IL23R Missense_Mutation p.M366L 0.29 tolerated(0.5) benign(0) TCGA-VQ-A8P5-01 1 74737337 74737337 T G FPGT-TNNI3K Missense_Mutation p.V244G 0.21 tolerated(0.07) benign(0.389) TCGA-VQ-A8P5-01 20 13782224 13782224 G A NDUFAF5 Silent p.A204A 0.18 TCGA-VQ-A8P5-01 20 13830086 13830086 G C SEL1L2 3'UTR 0.18 TCGA-VQ-A8P5-01 20 20071536 20071536 A C C20orf26 Silent p.T205T 0.17 TCGA-VQ-A8P5-01 20 31688258 31688258 C A BPIFB4 Silent p.S532S 0.15 TCGA-VQ-A8P5-01 20 32996558 32996559 - ACAAC ITCH Frame_Shift_Ins p.N61Tfs*18 0.12 TCGA-VQ-A8P5-01 20 42695378 42695378 G A TOX2 Silent p.P455P 0.15 TCGA-VQ-A8P5-01 20 43851419 43851419 A G SEMG2 Missense_Mutation p.I382M 0.26 tolerated(0.07) possibly_damaging(0.721) TCGA-VQ-A8P5-01 20 61834669 61834669 C T YTHDF1 Missense_Mutation p.S208N 0.29 tolerated(0.23) benign(0.001) TCGA-VQ-A8P5-01 21 10906995 10906995 T G TPTE Missense_Mutation p.K522N 0.11 deleterious(0) probably_damaging(0.968) TCGA-VQ-A8P5-01 22 16279241 16279241 A C POTEH Missense_Mutation p.L328V 0.03 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A8P5-01 22 17288718 17288718 T G XKR3 Missense_Mutation p.Q82H 0.16 deleterious(0.02) probably_damaging(0.934) TCGA-VQ-A8P5-01 22 32894541 32894541 A G FBXO7 3'UTR 0.12 TCGA-VQ-A8P5-01 22 38322024 38322024 C T MICALL1 Missense_Mutation p.P480L 0.23 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P5-01 22 42383256 42383256 C T SEPT3 Silent p.T126T 0.20 TCGA-VQ-A8P5-01 22 46931709 46931709 G A CELSR1 Silent p.N453N 0.09 TCGA-VQ-A8P5-01 2 10580712 10580712 C A ODC1 3'UTR 0.33 TCGA-VQ-A8P5-01 2 110015384 110015384 C T SH3RF3 Silent p.C428C 0.23 TCGA-VQ-A8P5-01 2 1271173 1271173 T A SNTG2 Missense_Mutation p.L372M 0.16 tolerated(0.17) possibly_damaging(0.868) TCGA-VQ-A8P5-01 2 159077161 159077161 C T CCDC148 Missense_Mutation p.R439H 0.10 tolerated(0.12) probably_damaging(0.923) TCGA-VQ-A8P5-01 2 166032947 166032947 C T SCN3A 5'UTR 0.06 TCGA-VQ-A8P5-01 2 3730540 3730540 C T ALLC Silent p.S129S 0.18 TCGA-VQ-A8P5-01 2 37455549 37455549 G T CEBPZ Missense_Mutation p.L263I 0.19 deleterious(0.03) possibly_damaging(0.589) TCGA-VQ-A8P5-01 2 45233236 45233236 C T SIX2 3'UTR 0.17 TCGA-VQ-A8P5-01 2 54859876 54859876 C G SPTBN1 Missense_Mutation p.I1246M 0.30 deleterious(0.02) probably_damaging(0.972) TCGA-VQ-A8P5-01 2 68358438 68358438 G A WDR92 Missense_Mutation p.L336F 0.18 deleterious(0) probably_damaging(1) TCGA-VQ-A8P5-01 2 80085255 80085256 - TGCCTG CTNNA2 In_Frame_Ins p.I139delinsMPV 0.11 TCGA-VQ-A8P5-01 2 80136908 80136908 C G CTNNA2 Missense_Mutation p.S347R 0.17 deleterious(0) benign(0.235) TCGA-VQ-A8P5-01 3 100972611 100972611 G A IMPG2 Missense_Mutation p.R390C 0.14 tolerated(0.17) benign(0.443) TCGA-VQ-A8P5-01 3 121158838 121158838 C T POLQ Splice_Site p.X2463_splice 0.13 TCGA-VQ-A8P5-01 3 127541215 127541215 G C MGLL 5'UTR 0.17 TCGA-VQ-A8P5-01 3 129821733 129821733 T C FAM86HP RNA 0.16 TCGA-VQ-A8P5-01 3 13612278 13612278 C T FBLN2 Silent p.H141H 0.50 TCGA-VQ-A8P5-01 3 142151510 142151510 G A XRN1 Missense_Mutation p.R101C 0.55 deleterious(0) probably_damaging(1) TCGA-VQ-A8P5-01 3 183217542 183217542 G A KLHL6 Missense_Mutation p.T328M 0.41 deleterious(0.02) probably_damaging(0.945) TCGA-VQ-A8P5-01 3 52263078 52263078 C G TWF2 Missense_Mutation p.G341A 0.16 tolerated(0.06) probably_damaging(0.999) TCGA-VQ-A8P5-01 3 54872650 54872650 T G CACNA2D3 Missense_Mutation p.L509R 0.25 deleterious(0) probably_damaging(0.977) TCGA-VQ-A8P5-01 4 113527239 113527239 G T C4orf21 Silent p.S909S 0.25 TCGA-VQ-A8P5-01 4 126373456 126373456 T G FAT4 Missense_Mutation p.L3762R 0.27 possibly_damaging(0.736) TCGA-VQ-A8P5-01 4 156841110 156841110 A T TDO2 Missense_Mutation p.S397C 0.05 deleterious(0.01) probably_damaging(0.98) TCGA-VQ-A8P5-01 4 164393491 164393491 C T TKTL2 Missense_Mutation p.A466T 0.27 deleterious(0.03) probably_damaging(0.97) TCGA-VQ-A8P5-01 4 1902589 1902589 G A WHSC1 Missense_Mutation p.A70T 0.27 tolerated(0.32) benign(0.024) TCGA-VQ-A8P5-01 4 87731115 87731115 G A PTPN13 Missense_Mutation p.G2431E 0.24 tolerated(0.06) probably_damaging(1) TCGA-VQ-A8P5-01 4 93225840 93225840 C T GRID2 Silent p.S11S 0.25 TCGA-VQ-A8P5-01 5 113740266 113740266 G A KCNN2 Silent p.T238T 0.41 TCGA-VQ-A8P5-01 5 136961498 136961498 A G KLHL3 Missense_Mutation p.V560A 0.25 tolerated(0.72) benign(0.002) TCGA-VQ-A8P5-01 5 140250938 140250938 G A PCDHA11 Silent p.S750S 0.59 TCGA-VQ-A8P5-01 5 140503174 140503174 G A PCDHB4 Missense_Mutation p.A532T 0.24 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-VQ-A8P5-01 5 140869159 140869159 C T PCDHGC5 Missense_Mutation p.R118C 0.14 deleterious(0) probably_damaging(0.926) TCGA-VQ-A8P5-01 5 159992773 159992773 A G ATP10B Missense_Mutation p.V1358A 0.24 tolerated(0.54) benign(0.001) TCGA-VQ-A8P5-01 5 161113274 161113274 A C GABRA6 Missense_Mutation p.N26T 0.66 tolerated_low_confidence(0.06) benign(0.033) TCGA-VQ-A8P5-01 5 161115976 161115976 T C GABRA6 Missense_Mutation p.F83L 0.51 deleterious(0.02) probably_damaging(0.987) TCGA-VQ-A8P5-01 5 169435601 169435601 A C DOCK2 Missense_Mutation p.K1058T 0.56 deleterious(0) possibly_damaging(0.889) TCGA-VQ-A8P5-01 5 176070676 176070676 G T EIF4E1B Silent p.R79R 0.46 TCGA-VQ-A8P5-01 5 177168327 177168327 T C FAM153A Missense_Mutation p.D47G 0.20 deleterious_low_confidence(0) possibly_damaging(0.728) TCGA-VQ-A8P5-01 5 57755766 57755766 G T PLK2 Silent p.I7I 0.12 TCGA-VQ-A8P5-01 5 74009440 74009440 A G HEXB Missense_Mutation p.H294R 0.19 deleterious(0) probably_damaging(1) TCGA-VQ-A8P5-01 5 80376469 80376469 G A RASGRF2 Missense_Mutation p.R341H 0.48 deleterious(0) probably_damaging(0.982) TCGA-VQ-A8P5-01 5 82815393 82815393 T C VCAN Missense_Mutation p.L423S 0.46 tolerated(1) benign(0.001) TCGA-VQ-A8P5-01 5 82833606 82833606 T G VCAN Missense_Mutation p.V1595G 0.54 deleterious(0) benign(0.408) TCGA-VQ-A8P5-01 6 110300544 110300544 G A GPR6 Missense_Mutation p.V77M 0.41 deleterious(0.01) possibly_damaging(0.693) TCGA-VQ-A8P5-01 6 170881346 170881346 C T TBP Missense_Mutation p.T338M 0.20 deleterious(0.03) benign(0.026) TCGA-VQ-A8P5-01 6 27222831 27222831 T G PRSS16 Missense_Mutation p.L466R 0.13 deleterious(0) probably_damaging(0.958) TCGA-VQ-A8P5-01 6 31913054 31913054 G A C2 Missense_Mutation p.D727N 0.23 deleterious(0) probably_damaging(1) TCGA-VQ-A8P5-01 6 32012908 32012908 A G TNXB Missense_Mutation p.L30P 0.10 tolerated(0.37) probably_damaging(1) TCGA-VQ-A8P5-01 6 36569938 36569938 A G SRSF3 3'UTR 0.26 TCGA-VQ-A8P5-01 6 41533495 41533495 C T FOXP4 5'UTR 0.31 TCGA-VQ-A8P5-01 6 47576894 47576894 T G CD2AP Silent p.S556S 0.30 TCGA-VQ-A8P5-01 6 50740385 50740385 G A TFAP2D Silent p.P389P 0.20 TCGA-VQ-A8P5-01 6 56437808 56437808 T C DST Missense_Mutation p.K1808E 0.31 probably_damaging(0.995) TCGA-VQ-A8P5-01 6 72957723 72957723 A C RIMS1 Missense_Mutation p.S712R 0.43 deleterious(0) benign(0.029) TCGA-VQ-A8P5-01 6 87964778 87964778 A C ZNF292 Missense_Mutation p.E477D 0.35 tolerated(0.24) possibly_damaging(0.638) TCGA-VQ-A8P5-01 6 90577601 90577601 C T CASP8AP2 RNA 0.11 TCGA-VQ-A8P5-01 7 105204197 105204197 A G RINT1 Silent p.Q563Q 0.17 TCGA-VQ-A8P5-01 7 121698871 121698871 A C PTPRZ1 Missense_Mutation p.E2182D 0.19 deleterious(0.02) benign(0.067) TCGA-VQ-A8P5-01 7 124465369 124465369 C T POT1 Missense_Mutation p.D577N 0.25 tolerated(0.61) benign(0.008) TCGA-VQ-A8P5-01 7 142250764 142250764 G A TRBV6-4 Missense_Mutation p.L95F 0.06 deleterious(0.02) probably_damaging(0.966) TCGA-VQ-A8P5-01 7 143747527 143747527 C A OR2A5 Missense_Mutation p.F11L 0.13 tolerated(0.05) benign(0.126) TCGA-VQ-A8P5-01 7 19184940 19184940 A C FERD3L Missense_Mutation p.F16V 0.26 deleterious(0) possibly_damaging(0.713) TCGA-VQ-A8P5-01 7 21655902 21655902 T G DNAH11 Missense_Mutation p.F1363V 0.19 possibly_damaging(0.856) TCGA-VQ-A8P5-01 7 48311943 48311943 T G ABCA13 Missense_Mutation p.L894V 0.17 benign(0.026) TCGA-VQ-A8P5-01 7 50513895 50513895 C T FIGNL1 Missense_Mutation p.G364E 0.20 tolerated(0.2) benign(0.003) TCGA-VQ-A8P5-01 7 55259533 55259533 C T EGFR Missense_Mutation p.A864V 0.12 tolerated(0.25) probably_damaging(0.944) TCGA-VQ-A8P5-01 7 55496092 55496092 G A LANCL2 Missense_Mutation p.G404R 0.15 deleterious(0) probably_damaging(0.994) TCGA-VQ-A8P5-01 8 102731649 102731649 C T NCALD Missense_Mutation p.R70H 0.06 deleterious(0) benign(0.377) TCGA-VQ-A8P5-01 8 110986314 110986314 A C KCNV1 Missense_Mutation p.F102V 0.41 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P5-01 8 113504743 113504743 C G CSMD3 Missense_Mutation p.W1751C 0.67 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8P5-01 8 113678601 113678601 G C CSMD3 Silent p.L907L 0.56 TCGA-VQ-A8P5-01 8 114111134 114111134 A C CSMD3 Missense_Mutation p.S256R 0.08 deleterious(0.01) benign(0.094) TCGA-VQ-A8P5-01 8 116427249 116427249 T A TRPS1 Nonsense_Mutation p.R963* 0.42 TCGA-VQ-A8P5-01 8 133650332 133650332 A C LRRC6 Missense_Mutation p.L93R 0.09 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P5-01 8 25340930 25340930 C A CDCA2 Missense_Mutation p.L350I 0.22 deleterious(0.04) possibly_damaging(0.662) TCGA-VQ-A8P5-01 8 55542884 55542884 G C RP1 Missense_Mutation p.E2148Q 0.07 deleterious(0.01) possibly_damaging(0.722) TCGA-VQ-A8P5-01 8 59058739 59058739 G T FAM110B 5'UTR 0.38 TCGA-VQ-A8P5-01 8 61693574 61693574 C A CHD7 Missense_Mutation p.P561T 0.19 possibly_damaging(0.641) TCGA-VQ-A8P5-01 8 68930087 68930087 T G PREX2 Missense_Mutation p.L50V 0.19 deleterious(0.04) benign(0.279) TCGA-VQ-A8P5-01 9 103059369 103059369 C T INVS Missense_Mutation p.P986L 0.13 tolerated_low_confidence(0.86) benign(0.002) TCGA-VQ-A8P5-01 9 105765436 105765436 G T CYLC2 Missense_Mutation p.S24I 0.14 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8P5-01 9 118950132 118950132 G A PAPPA Missense_Mutation p.R372H 0.08 tolerated(0.06) benign(0) TCGA-VQ-A8P5-01 9 120474989 120474989 T G TLR4 Missense_Mutation p.L195V 0.39 tolerated(0.08) benign(0.068) TCGA-VQ-A8P5-01 9 123898136 123898136 C T CNTRL Missense_Mutation p.S693F 0.26 possibly_damaging(0.757) TCGA-VQ-A8P5-01 9 15199909 15199909 G A TTC39B Silent p.I258I 0.29 TCGA-VQ-A8P5-01 9 23705056 23705056 C T ELAVL2 Missense_Mutation p.R116H 0.41 deleterious(0) possibly_damaging(0.694) TCGA-VQ-A8P5-01 9 33470126 33470126 C T NOL6 Missense_Mutation p.V148M 0.21 deleterious(0.01) possibly_damaging(0.528) TCGA-VQ-A8P5-01 9 72758617 72758617 C A MAMDC2 Missense_Mutation p.A429E 0.14 deleterious(0.03) probably_damaging(0.914) TCGA-VQ-A8P5-01 9 84607508 84607508 A C SPATA31D1 Missense_Mutation p.E708A 0.23 deleterious(0.01) possibly_damaging(0.729) TCGA-VQ-A8P5-01 9 97365798 97365799 - CC FBP1 Frame_Shift_Ins p.M295Efs*11 0.12 TCGA-VQ-A8P5-01 9 98660173 98660173 C T ERCC6L2 Missense_Mutation p.R183C 0.30 deleterious(0.01) possibly_damaging(0.893) TCGA-VQ-A8P5-01 9 99581748 99581748 G C ZNF782 Missense_Mutation p.S186C 0.28 tolerated(0.15) benign(0.007) TCGA-VQ-A8P5-01 X 101768984 101768984 C T TMSB15A 3'UTR 0.75 TCGA-VQ-A8P5-01 X 113949654 113949654 G A HTR2C Intron 0.63 TCGA-VQ-A8P5-01 X 119004844 119004844 C T RNF113A Missense_Mutation p.E245K 0.12 tolerated(0.07) benign(0.005) TCGA-VQ-A8P5-01 X 139866447 139866447 C T CDR1 Missense_Mutation p.E29K 0.30 deleterious(0.02) possibly_damaging(0.486) TCGA-VQ-A8P5-01 X 140271073 140271073 C T LDOC1 Missense_Mutation p.R45H 0.37 deleterious(0) probably_damaging(0.988) TCGA-VQ-A8P5-01 X 140785629 140785629 G A SPANXD Missense_Mutation p.A96V 0.11 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-VQ-A8P5-01 X 148039901 148039901 A C AFF2 Missense_Mutation p.K868T 0.21 deleterious(0.05) probably_damaging(0.998) TCGA-VQ-A8P5-01 X 152482803 152482803 A C MAGEA1 Missense_Mutation p.F70V 0.68 tolerated(0.35) benign(0.038) TCGA-VQ-A8P5-01 X 32407682 32407682 A T DMD Nonsense_Mutation p.L1485* 0.38 TCGA-VQ-A8P8-01 10 134598577 134598577 T C NKX6-2 Missense_Mutation p.K226R 0.07 tolerated(0.28) benign(0.066) TCGA-VQ-A8P8-01 10 64960253 64960253 T C JMJD1C Silent p.R1753R 0.18 TCGA-VQ-A8P8-01 10 71160774 71160774 G A HK1 Silent p.V883V 0.05 TCGA-VQ-A8P8-01 10 87362075 87362075 G T GRID1 Silent p.G995G 0.13 TCGA-VQ-A8P8-01 11 22387090 22387090 C A SLC17A6 Intron 0.09 TCGA-VQ-A8P8-01 11 44069684 44069684 C T ACCSL Missense_Mutation p.T33M 0.08 tolerated(0.72) benign(0) TCGA-VQ-A8P8-01 11 45671725 45671725 G A CHST1 Missense_Mutation p.T250M 0.11 deleterious(0.02) benign(0.243) TCGA-VQ-A8P8-01 11 46465085 46465085 A G AMBRA1 Missense_Mutation p.L772P 0.09 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P8-01 11 46568762 46568763 - C AMBRA1 Frame_Shift_Ins p.H94Tfs*28 0.08 TCGA-VQ-A8P8-01 11 57077933 57077933 C G TNKS1BP1 Missense_Mutation p.G751A 0.17 tolerated(0.29) benign(0.121) TCGA-VQ-A8P8-01 11 62747377 62747377 G T SLC22A6 Missense_Mutation p.Q361K 0.08 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8P8-01 11 65402819 65402819 C T PCNXL3 Missense_Mutation p.T1695M 0.23 tolerated(0.32) benign(0.274) TCGA-VQ-A8P8-01 11 66617583 66617583 G A PC Missense_Mutation p.T908M 0.18 deleterious(0) probably_damaging(1) TCGA-VQ-A8P8-01 12 109675034 109675034 G A ACACB Missense_Mutation p.R1504Q 0.10 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P8-01 12 40651127 40651127 C T LRRK2 Missense_Mutation p.P456S 0.10 tolerated(0.18) benign(0.23) TCGA-VQ-A8P8-01 12 56489535 56489535 G A ERBB3 Missense_Mutation p.R667H 0.09 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P8-01 13 111545504 111545504 A C ANKRD10 Missense_Mutation p.F188V 0.13 tolerated(0.05) possibly_damaging(0.563) TCGA-VQ-A8P8-01 13 32812093 32812093 A G FRY Missense_Mutation p.I2130V 0.17 tolerated(0.79) benign(0.001) TCGA-VQ-A8P8-01 13 79175685 79175685 G A POU4F1 Silent p.A375A 0.06 TCGA-VQ-A8P8-01 14 103434816 103434816 G A CDC42BPB Nonsense_Mutation p.R745* 0.06 TCGA-VQ-A8P8-01 14 106610326 106610326 T A IGHV3-15 Missense_Mutation p.Y115F 0.04 deleterious_low_confidence(0.01) probably_damaging(0.976) TCGA-VQ-A8P8-01 14 22554962 22554962 C A TRAV23DV6 Missense_Mutation p.Q30K 0.17 deleterious(0.05) possibly_damaging(0.513) TCGA-VQ-A8P8-01 14 50360356 50360356 G T ARF6 5'UTR 0.16 TCGA-VQ-A8P8-01 14 68157017 68157017 G A RDH11 Silent p.G192G 0.10 TCGA-VQ-A8P8-01 15 22332678 22332678 C A RP11-69H14.6 RNA 0.09 TCGA-VQ-A8P8-01 15 34649836 34649836 A G NUTM1 3'UTR 0.15 TCGA-VQ-A8P8-01 15 55652153 55652154 - T CCPG1 Frame_Shift_Ins p.N606Kfs*12 0.13 TCGA-VQ-A8P8-01 15 63966826 63966826 C T HERC1 Missense_Mutation p.A2521T 0.21 benign(0) TCGA-VQ-A8P8-01 15 65681260 65681260 G A IGDCC4 Missense_Mutation p.R865W 0.14 deleterious(0.02) probably_damaging(0.953) TCGA-VQ-A8P8-01 16 11362818 11362818 C T TNP2 Missense_Mutation p.R101H 0.27 deleterious(0) benign(0) TCGA-VQ-A8P8-01 16 19058482 19058482 C A TMC7 Missense_Mutation p.Q551K 0.05 deleterious(0) probably_damaging(0.991) TCGA-VQ-A8P8-01 16 2764325 2764325 C T PRSS27 Silent p.T83T 0.19 TCGA-VQ-A8P8-01 16 3063416 3063416 G T CLDN9 Missense_Mutation p.W18L 0.20 tolerated(0.07) probably_damaging(0.999) TCGA-VQ-A8P8-01 16 3613908 3613908 G A NLRC3 Missense_Mutation p.R391C 0.12 deleterious(0.02) benign(0.009) TCGA-VQ-A8P8-01 16 51175484 51175484 C T SALL1 Missense_Mutation p.G217S 0.16 tolerated(0.65) benign(0.001) TCGA-VQ-A8P8-01 16 81077441 81077441 G A ATMIN Silent p.S446S 0.07 TCGA-VQ-A8P8-01 17 37343830 37343830 G A CACNB1 Missense_Mutation p.R106W 0.07 deleterious(0) probably_damaging(0.947) TCGA-VQ-A8P8-01 17 43911182 43911182 C T CRHR1 Silent p.F373F 0.14 TCGA-VQ-A8P8-01 17 61628156 61628156 G A DCAF7 Missense_Mutation p.V40M 0.09 tolerated(0.35) benign(0.007) TCGA-VQ-A8P8-01 17 61972614 61972614 G A CSH1 Intron 0.07 TCGA-VQ-A8P8-01 18 22805890 22805890 C A ZNF521 Missense_Mutation p.L664F 0.05 tolerated(0.71) probably_damaging(0.995) TCGA-VQ-A8P8-01 18 33718279 33718279 C T ELP2 Missense_Mutation p.A112V 0.06 tolerated(0.16) benign(0.258) TCGA-VQ-A8P8-01 18 65180404 65180404 C G DSEL Missense_Mutation p.G491A 0.07 deleterious(0) probably_damaging(1) TCGA-VQ-A8P8-01 18 77659160 77659160 G A KCNG2 Missense_Mutation p.A249T 0.24 tolerated(0.72) benign(0) TCGA-VQ-A8P8-01 19 1055911 1055911 A G ABCA7 Missense_Mutation p.K1404R 0.10 tolerated(0.16) benign(0.01) TCGA-VQ-A8P8-01 19 15807011 15807011 C A CYP4F12 Missense_Mutation p.N430K 0.11 deleterious(0) probably_damaging(0.942) TCGA-VQ-A8P8-01 19 17088186 17088186 C T CPAMD8 Missense_Mutation p.E631K 0.12 deleterious(0.01) probably_damaging(0.98) TCGA-VQ-A8P8-01 19 35449064 35449064 G A ZNF792 Silent p.S565S 0.12 TCGA-VQ-A8P8-01 19 36269405 36269405 C T ARHGAP33 Missense_Mutation p.R104C 0.13 tolerated_low_confidence(0.1) possibly_damaging(0.835) TCGA-VQ-A8P8-01 19 37118181 37118181 A G ZNF382 Missense_Mutation p.E461G 0.07 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P8-01 19 43258639 43258639 C G PSG8 Missense_Mutation p.Q363H 0.05 deleterious(0.02) possibly_damaging(0.857) TCGA-VQ-A8P8-01 19 50322518 50322518 C T MED25 Silent p.S90S 0.07 TCGA-VQ-A8P8-01 19 51630344 51630344 G A SIGLEC9 Missense_Mutation p.R269H 0.13 tolerated(0.14) benign(0.104) TCGA-VQ-A8P8-01 19 52919381 52919381 C T ZNF528 Nonsense_Mutation p.R426* 0.17 TCGA-VQ-A8P8-01 19 56538576 56538576 G A NLRP5 Missense_Mutation p.R326Q 0.25 tolerated(0.64) benign(0.003) TCGA-VQ-A8P8-01 19 9049154 9049154 G A MUC16 Missense_Mutation p.T10826M 0.05 benign(0.042) TCGA-VQ-A8P8-01 19 9083890 9083890 G A MUC16 Missense_Mutation p.T2642I 0.19 unknown(0) TCGA-VQ-A8P8-01 1 103474043 103474043 A G COL11A1 Silent p.G553G 0.07 TCGA-VQ-A8P8-01 1 12368576 12368576 G A VPS13D Silent p.S2176S 0.05 TCGA-VQ-A8P8-01 1 162766464 162766464 C T HSD17B7 Missense_Mutation p.S110L 0.08 deleterious(0) probably_damaging(0.943) TCGA-VQ-A8P8-01 1 177001816 177001816 C T ASTN1 Missense_Mutation p.R214Q 0.11 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-VQ-A8P8-01 1 196646701 196646701 C T CFH Missense_Mutation p.R175W 0.10 deleterious(0) possibly_damaging(0.712) TCGA-VQ-A8P8-01 1 208215443 208215443 C T PLXNA2 Missense_Mutation p.R1429K 0.08 deleterious(0) probably_damaging(0.946) TCGA-VQ-A8P8-01 1 21926107 21926107 C T RAP1GAP Silent p.A616A 0.20 TCGA-VQ-A8P8-01 1 234367311 234367311 C T SLC35F3 Silent p.C144C 0.16 TCGA-VQ-A8P8-01 1 248570309 248570309 C T OR2T1 Silent p.L338L 0.07 TCGA-VQ-A8P8-01 1 27105715 27105715 G T ARID1A Nonsense_Mutation p.E1776* 0.11 TCGA-VQ-A8P8-01 1 53099311 53099311 T C FAM159A Missense_Mutation p.F49S 0.07 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8P8-01 1 86611805 86611805 G C COL24A1 Missense_Mutation p.Q40E 0.07 tolerated(0.62) benign(0.024) TCGA-VQ-A8P8-01 1 9085119 9085119 C T SLC2A7 Silent p.T22T 0.14 TCGA-VQ-A8P8-01 20 44523350 44523350 C T CTSA Missense_Mutation p.P298L 0.07 deleterious(0.03) benign(0.06) TCGA-VQ-A8P8-01 20 50701411 50701411 G A ZFP64 Silent p.H541H 0.28 TCGA-VQ-A8P8-01 21 47532419 47532419 C T COL6A2 Silent p.N214N 0.28 TCGA-VQ-A8P8-01 2 171399459 171399459 G A MYO3B Missense_Mutation p.A1207T 0.16 tolerated_low_confidence(0.63) benign(0.001) TCGA-VQ-A8P8-01 2 179479370 179479370 T G TTN Missense_Mutation p.T16291P 0.17 TCGA-VQ-A8P8-01 2 182780246 182780246 G T SSFA2 Missense_Mutation p.D627Y 0.13 deleterious(0.02) benign(0.182) TCGA-VQ-A8P8-01 2 1926721 1926721 C T MYT1L Missense_Mutation p.V274I 0.17 tolerated_low_confidence(0.05) benign(0.364) TCGA-VQ-A8P8-01 2 218821 218821 G A SH3YL1 Missense_Mutation p.T340I 0.08 deleterious(0.04) possibly_damaging(0.526) TCGA-VQ-A8P8-01 2 219501210 219501210 C T PLCD4 Silent p.H733H 0.10 TCGA-VQ-A8P8-01 2 76975920 76975920 G T LRRTM4 Missense_Mutation p.D558E 0.10 tolerated_low_confidence(1) benign(0) TCGA-VQ-A8P8-01 2 86997204 86997204 C T RMND5A Nonsense_Mutation p.Q305* 0.12 TCGA-VQ-A8P8-01 3 126135285 126135285 C T CCDC37 Missense_Mutation p.R118C 0.24 tolerated(0.1) benign(0.005) TCGA-VQ-A8P8-01 3 133560168 133560168 G A RAB6B Missense_Mutation p.R84W 0.05 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8P8-01 3 194118262 194118262 C T GP5 Silent p.S250S 0.04 TCGA-VQ-A8P8-01 3 19479854 19479854 G A KCNH8 Splice_Site p.X459_splice 0.12 TCGA-VQ-A8P8-01 3 38149902 38149902 G A DLEC1 Missense_Mutation p.G1009R 0.12 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8P8-01 3 38595864 38595864 G A SCN5A Silent p.G1573G 0.05 TCGA-VQ-A8P8-01 3 44612596 44612596 G T ZKSCAN7 Missense_Mutation p.C665F 0.14 deleterious(0) probably_damaging(1) TCGA-VQ-A8P8-01 3 46062444 46062444 G T XCR1 Missense_Mutation p.F332L 0.26 tolerated(0.33) benign(0.015) TCGA-VQ-A8P8-01 3 49405953 49405953 C T RHOA Missense_Mutation p.G62E 0.19 deleterious(0) probably_damaging(0.952) TCGA-VQ-A8P8-01 3 52841824 52841824 G A ITIH3 Missense_Mutation p.V775M 0.16 tolerated(0.11) benign(0.149) TCGA-VQ-A8P8-01 3 52861114 52861114 G A ITIH4 Silent p.L117L 0.08 TCGA-VQ-A8P8-01 4 10447532 10447532 G T ZNF518B Silent p.R141R 0.05 TCGA-VQ-A8P8-01 4 123184027 123184027 G T KIAA1109 Nonsense_Mutation p.E2291* 0.12 TCGA-VQ-A8P8-01 4 126412864 126412864 G A FAT4 Missense_Mutation p.G4963S 0.08 benign(0.013) TCGA-VQ-A8P8-01 4 156725839 156725839 C A GUCY1B3 Missense_Mutation p.T550K 0.23 deleterious(0) probably_damaging(0.937) TCGA-VQ-A8P8-01 4 158281129 158281129 G A GRIA2 Missense_Mutation p.E709K 0.07 tolerated(0.06) probably_damaging(0.937) TCGA-VQ-A8P8-01 4 20597433 20597433 C T SLIT2 Missense_Mutation p.T1099M 0.06 deleterious(0) probably_damaging(1) TCGA-VQ-A8P8-01 4 57193838 57193838 G A KIAA1211 Silent p.A1190A 0.12 TCGA-VQ-A8P8-01 5 137680676 137680676 C T FAM53C Missense_Mutation p.P100L 0.06 tolerated(0.39) benign(0.008) TCGA-VQ-A8P8-01 5 140789140 140789140 C T PCDHGB6 Silent p.Y457Y 0.19 TCGA-VQ-A8P8-01 5 71490040 71490040 C T MAP1B Silent p.G286G 0.08 TCGA-VQ-A8P8-01 5 80548618 80548618 C T CKMT2 Missense_Mutation p.T86M 0.10 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8P8-01 6 31924788 31924788 C G NELFE Splice_Site p.X26_splice 0.16 TCGA-VQ-A8P8-01 6 33411319 33411319 C T SYNGAP1 Missense_Mutation p.A997V 0.04 tolerated(0.13) benign(0.416) TCGA-VQ-A8P8-01 6 90642454 90642454 G A BACH2 Silent p.L733L 0.08 TCGA-VQ-A8P8-01 7 11457191 11457191 T C THSD7A Silent p.V1141V 0.12 TCGA-VQ-A8P8-01 7 127235420 127235420 C T FSCN3 Silent p.S68S 0.20 TCGA-VQ-A8P8-01 7 137237275 137237275 G A DGKI Nonsense_Mutation p.Q663* 0.12 TCGA-VQ-A8P8-01 7 97833476 97833476 C T LMTK2 Silent p.T1487T 0.08 TCGA-VQ-A8P8-01 8 105368394 105368394 C A DCSTAMP Missense_Mutation p.Q461K 0.10 tolerated(0.15) benign(0.021) TCGA-VQ-A8P8-01 8 131949332 131949332 T G ADCY8 Missense_Mutation p.I490L 0.07 tolerated(0.09) benign(0.046) TCGA-VQ-A8P8-01 8 145657806 145657806 G A TONSL Silent p.N1199N 0.11 TCGA-VQ-A8P8-01 8 145666479 145666479 C T TONSL Missense_Mutation p.R294Q 0.17 tolerated(0.88) benign(0.007) TCGA-VQ-A8P8-01 8 68139516 68139516 G A ARFGEF1 Missense_Mutation p.R1258W 0.04 deleterious(0) probably_damaging(1) TCGA-VQ-A8P8-01 8 73849062 73849062 G A KCNB2 Missense_Mutation p.R491Q 0.14 deleterious_low_confidence(0.02) possibly_damaging(0.532) TCGA-VQ-A8P8-01 9 116811913 116811913 C T ZNF618 Silent p.D684D 0.07 TCGA-VQ-A8P8-01 9 130592052 130592052 G A ENG Missense_Mutation p.P92S 0.13 tolerated(0.24) benign(0.06) TCGA-VQ-A8P8-01 9 134019671 134019671 T G NUP214 Missense_Mutation p.S433R 0.05 benign(0.157) TCGA-VQ-A8P8-01 9 136582491 136582491 G A SARDH Silent p.P369P 0.10 TCGA-VQ-A8P8-01 9 138379062 138379062 C T PPP1R26 Silent p.A902A 0.12 TCGA-VQ-A8P8-01 9 17484377 17484377 G A CNTLN Missense_Mutation p.A1314T 0.10 tolerated(0.07) benign(0.009) TCGA-VQ-A8P8-01 X 111698596 111698596 C A ZCCHC16 Missense_Mutation p.Q214K 0.06 tolerated(0.12) benign(0.147) TCGA-VQ-A8P8-01 X 113965941 113965941 T C HTR2C Silent p.L92L 0.17 TCGA-VQ-A8P8-01 X 118220960 118220961 - A KIAA1210 Frame_Shift_Ins p.S1412Qfs*38 0.09 TCGA-VQ-A8P8-01 X 130412482 130412482 T C IGSF1 Missense_Mutation p.E670G 0.06 deleterious(0.04) possibly_damaging(0.894) TCGA-VQ-A8P8-01 X 135630987 135630987 G A VGLL1 Missense_Mutation p.A152T 0.06 tolerated(0.57) benign(0.006) TCGA-VQ-A8P8-01 X 144905667 144905667 A G SLITRK2 Missense_Mutation p.E575G 0.07 deleterious(0.01) benign(0.009) TCGA-VQ-A8P8-01 X 149013591 149013591 T A MAGEA8 Missense_Mutation p.V182D 0.06 deleterious(0.02) probably_damaging(0.983) TCGA-VQ-A8P8-01 X 16847878 16847878 C T TXLNG Silent p.Y283Y 0.15 TCGA-VQ-A8P8-01 X 24906160 24906160 G A POLA1 Missense_Mutation p.R1356Q 0.13 tolerated(0.08) possibly_damaging(0.832) TCGA-VQ-A8P8-01 X 39933338 39933338 C T BCOR Missense_Mutation p.G421S 0.11 tolerated(1) probably_damaging(0.979) TCGA-VQ-A8P8-01 X 57935679 57935679 C T ZXDA Silent p.A392A 0.18 TCGA-VQ-A8PB-01 10 100374709 100374709 A - HPSE2 Frame_Shift_Del p.F424Lfs*28 0.20 TCGA-VQ-A8PB-01 10 104140922 104140922 G A GBF1 Missense_Mutation p.A1737T 0.21 tolerated_low_confidence(0.32) benign(0.062) TCGA-VQ-A8PB-01 10 105331472 105331472 G A NEURL1 Missense_Mutation p.R181H 0.42 tolerated(0.09) possibly_damaging(0.893) TCGA-VQ-A8PB-01 10 1149610 1149610 C T WDR37 Silent p.S265S 0.15 TCGA-VQ-A8PB-01 10 115971727 115971727 T C TDRD1 Missense_Mutation p.M588T 0.30 tolerated(1) benign(0) TCGA-VQ-A8PB-01 10 118357677 118357677 G A PNLIPRP1 Silent p.A271A 0.27 TCGA-VQ-A8PB-01 10 12200023 12200023 G A SEC61A2 Silent p.V298V 0.31 TCGA-VQ-A8PB-01 10 122630821 122630821 A - WDR11 Frame_Shift_Del p.N480Tfs*32 0.23 TCGA-VQ-A8PB-01 10 123903115 123903115 C G TACC2 Missense_Mutation p.L1910V 0.35 benign(0.021) TCGA-VQ-A8PB-01 10 126691571 126691571 T G CTBP2 Missense_Mutation p.S646R 0.22 deleterious(0.01) possibly_damaging(0.808) TCGA-VQ-A8PB-01 10 127697109 127697109 C T FANK1 Missense_Mutation p.T280M 0.06 deleterious(0) probably_damaging(1) TCGA-VQ-A8PB-01 10 134511377 134511377 C T INPP5A Missense_Mutation p.T143M 0.33 deleterious(0.01) probably_damaging(0.981) TCGA-VQ-A8PB-01 10 18289593 18289593 T C SLC39A12 Intron 0.30 TCGA-VQ-A8PB-01 10 22830921 22830921 A G PIP4K2A Missense_Mutation p.V283A 0.34 tolerated(0.07) benign(0.403) TCGA-VQ-A8PB-01 10 24508691 24508692 - G KIAA1217 Frame_Shift_Ins p.P72Afs*14 0.23 TCGA-VQ-A8PB-01 10 26939527 26939527 G A LINC00202-2 RNA 0.10 TCGA-VQ-A8PB-01 10 30316778 30316778 T C KIAA1462 Missense_Mutation p.T767A 0.09 deleterious(0.03) possibly_damaging(0.834) TCGA-VQ-A8PB-01 10 34630699 34630699 G A PARD3 Missense_Mutation p.T758I 0.27 tolerated(0.15) benign(0.005) TCGA-VQ-A8PB-01 10 38241302 38241302 C T ZNF25 Missense_Mutation p.C375Y 0.32 deleterious(0) probably_damaging(1) TCGA-VQ-A8PB-01 10 63212608 63212608 C A TMEM26 Intron 0.08 TCGA-VQ-A8PB-01 10 64950765 64950765 A G JMJD1C Silent p.N2060N 0.24 TCGA-VQ-A8PB-01 10 6557104 6557104 G A PRKCQ Intron 0.21 TCGA-VQ-A8PB-01 10 71690164 71690164 C T COL13A1 Silent p.R502R 0.29 TCGA-VQ-A8PB-01 10 72631651 72631651 A G SGPL1 Missense_Mutation p.I323V 0.23 tolerated(0.36) benign(0.401) TCGA-VQ-A8PB-01 10 79397038 79397038 G A KCNMA1 Silent p.C121C 0.22 TCGA-VQ-A8PB-01 10 82126792 82126792 C A DYDC2 3'UTR 0.29 TCGA-VQ-A8PB-01 10 82403841 82403842 - T SH2D4B 3'UTR 0.23 TCGA-VQ-A8PB-01 10 85992585 85992585 C T LRIT1 Missense_Mutation p.G324R 0.21 deleterious(0) probably_damaging(1) TCGA-VQ-A8PB-01 10 87407161 87407161 T G GRID1 Intron 0.31 TCGA-VQ-A8PB-01 10 88911951 88911951 C T FAM35A Silent p.Y280Y 0.26 TCGA-VQ-A8PB-01 10 89693003 89693003 A - PTEN Frame_Shift_Del p.K164Rfs*3 0.19 TCGA-VQ-A8PB-01 10 89717770 89717770 A - PTEN Frame_Shift_Del p.K267Rfs*9 0.32 TCGA-VQ-A8PB-01 10 90966366 90966366 C T CH25H Silent p.V228V 0.29 TCGA-VQ-A8PB-01 10 93756272 93756272 G A BTAF1 Nonsense_Mutation p.W1152* 0.16 TCGA-VQ-A8PB-01 10 95987143 95987143 T - PLCE1 Frame_Shift_Del p.H630Qfs*28 0.18 TCGA-VQ-A8PB-01 10 97620326 97620326 A G ENTPD1 Missense_Mutation p.Q404R 0.22 tolerated(1) benign(0.003) TCGA-VQ-A8PB-01 10 99509237 99509238 - G ZFYVE27 Frame_Shift_Ins p.A188Gfs*38 0.21 TCGA-VQ-A8PB-01 10 99527541 99527543 CTT - SFRP5 In_Frame_Del p.K228del 0.23 TCGA-VQ-A8PB-01 11 101937260 101937260 C - C11orf70 Frame_Shift_Del p.Q105Sfs*26 0.12 TCGA-VQ-A8PB-01 11 102495930 102495930 C T MMP20 Missense_Mutation p.A41T 0.17 deleterious(0.02) benign(0.423) TCGA-VQ-A8PB-01 11 10821808 10821808 C T EIF4G2 Missense_Mutation p.A650T 0.27 deleterious(0) probably_damaging(1) TCGA-VQ-A8PB-01 11 110035457 110035457 A G ZC3H12C Silent p.P549P 0.31 TCGA-VQ-A8PB-01 11 112084516 112084516 C A BCO2 Missense_Mutation p.P422T 0.06 deleterious(0.01) benign(0.297) TCGA-VQ-A8PB-01 11 113857496 113857496 C - HTR3A Frame_Shift_Del p.S329Pfs*27 0.18 TCGA-VQ-A8PB-01 11 114442010 114442010 T C NXPE4 Missense_Mutation p.T429A 0.31 deleterious(0.02) probably_damaging(0.992) TCGA-VQ-A8PB-01 11 117100369 117100369 G A PCSK7 Silent p.D64D 0.29 TCGA-VQ-A8PB-01 11 118211109 118211109 G A CD3D Silent p.T85T 0.19 TCGA-VQ-A8PB-01 11 118376683 118376683 C T KMT2A Missense_Mutation p.A3359V 0.33 benign(0.079) TCGA-VQ-A8PB-01 11 118773371 118773371 C T BCL9L Missense_Mutation p.A361T 0.24 benign(0) TCGA-VQ-A8PB-01 11 130332486 130332486 T - ADAMTS15 Frame_Shift_Del p.F452Lfs*107 0.18 TCGA-VQ-A8PB-01 11 13733567 13733567 G T FAR1 Silent p.A287A 0.31 TCGA-VQ-A8PB-01 11 1619642 1619642 T - KRTAP5-2 5'Flank 0.29 TCGA-VQ-A8PB-01 11 17743108 17743108 C T MYOD1 3'UTR 0.43 TCGA-VQ-A8PB-01 11 31455004 31455004 T C IMMP1L Intron 0.43 TCGA-VQ-A8PB-01 11 33038057 33038057 C T DEPDC7 Intron 0.33 TCGA-VQ-A8PB-01 11 33118497 33118497 G A CSTF3 Missense_Mutation p.R386W 0.10 deleterious(0) probably_damaging(1) TCGA-VQ-A8PB-01 11 33564609 33564609 C T KIAA1549L Silent p.D203D 0.36 TCGA-VQ-A8PB-01 11 34680121 34680121 C T EHF Missense_Mutation p.L239F 0.30 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PB-01 11 44626652 44626652 G A CD82 Missense_Mutation p.G61S 0.04 tolerated(0.44) benign(0.202) TCGA-VQ-A8PB-01 11 46407048 46407048 C T CHRM4 Missense_Mutation p.V354M 0.28 tolerated(0.24) possibly_damaging(0.82) TCGA-VQ-A8PB-01 11 4661506 4661506 G A OR51D1 Silent p.L162L 0.31 TCGA-VQ-A8PB-01 11 46726892 46726892 G A ZNF408 Missense_Mutation p.G548R 0.38 deleterious(0) probably_damaging(1) TCGA-VQ-A8PB-01 11 47469403 47469403 G A RAPSN Silent p.R164R 0.20 TCGA-VQ-A8PB-01 11 47508321 47508321 A G CELF1 Silent p.A124A 0.31 TCGA-VQ-A8PB-01 11 47741597 47741598 - T FNBP4 Frame_Shift_Ins p.W950Vfs*7 0.16 TCGA-VQ-A8PB-01 11 55035836 55035836 A G TRIM48 Missense_Mutation p.D189G 0.09 tolerated(0.15) benign(0.098) TCGA-VQ-A8PB-01 11 56511067 56511067 A G OR9G4 Missense_Mutation p.M74T 0.31 deleterious(0) probably_damaging(0.992) TCGA-VQ-A8PB-01 11 57118235 57118235 G - P2RX3 Splice_Site p.X237_splice 0.31 TCGA-VQ-A8PB-01 11 57559051 57559051 G A CTNND1 Missense_Mutation p.R34Q 0.35 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8PB-01 11 58377784 58377784 G C ZFP91 Missense_Mutation p.E198D 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.525) TCGA-VQ-A8PB-01 11 60699294 60699294 A - TMEM132A Frame_Shift_Del p.M386Wfs*25 0.25 TCGA-VQ-A8PB-01 11 61491019 61491019 C T DAGLA Missense_Mutation p.R175C 0.26 deleterious(0.01) probably_damaging(0.995) TCGA-VQ-A8PB-01 11 61539013 61539013 C - MYRF Frame_Shift_Del p.S264Afs*8 0.33 TCGA-VQ-A8PB-01 11 62649529 62649529 A - SLC3A2 Frame_Shift_Del p.K301Rfs*31 0.41 TCGA-VQ-A8PB-01 11 63671487 63671487 C T MARK2 Missense_Mutation p.T515M 0.23 tolerated(0.13) possibly_damaging(0.73) TCGA-VQ-A8PB-01 11 63992105 63992105 G T TRPT1 Missense_Mutation p.P140T 0.15 tolerated(0.1) benign(0.152) TCGA-VQ-A8PB-01 11 64064611 64064611 C T KCNK4 Missense_Mutation p.R112C 0.30 deleterious(0) benign(0.042) TCGA-VQ-A8PB-01 11 64138850 64138850 C T RPS6KA4 Silent p.T739T 0.34 TCGA-VQ-A8PB-01 11 64428408 64428408 G A NRXN2 Nonsense_Mutation p.R668* 0.24 TCGA-VQ-A8PB-01 11 64434749 64434749 C T NRXN2 Missense_Mutation p.V591M 0.28 deleterious(0.02) benign(0.23) TCGA-VQ-A8PB-01 11 64591974 64591974 G - CDC42BPG Frame_Shift_Del p.L1543Yfs*14 0.19 TCGA-VQ-A8PB-01 11 6477355 6477355 C T TRIM3 Missense_Mutation p.A494T 0.41 tolerated(0.48) benign(0.043) TCGA-VQ-A8PB-01 11 64876328 64876328 C T VPS51 Missense_Mutation p.A462V 0.28 tolerated(0.31) benign(0.164) TCGA-VQ-A8PB-01 11 64879074 64879074 A G VPS51 3'UTR 0.27 TCGA-VQ-A8PB-01 11 6540834 6540834 A G DNHD1 Missense_Mutation p.H466R 0.23 benign(0.055) TCGA-VQ-A8PB-01 11 65788415 65788415 G A CATSPER1 Silent p.S598S 0.24 TCGA-VQ-A8PB-01 11 65810715 65810716 GC - GAL3ST3 Frame_Shift_Del p.P187Rfs*27 0.30 TCGA-VQ-A8PB-01 11 68115395 68115395 G A LRP5 Missense_Mutation p.V58M 0.36 deleterious(0) possibly_damaging(0.717) TCGA-VQ-A8PB-01 11 68191116 68191116 C T LRP5 Missense_Mutation p.R1063C 0.05 deleterious(0.01) benign(0.003) TCGA-VQ-A8PB-01 11 70333053 70333053 C - SHANK2 Frame_Shift_Del p.P1117Hfs*58 0.20 TCGA-VQ-A8PB-01 11 73076824 73076824 G A ARHGEF17 Missense_Mutation p.V1943I 0.34 tolerated(0.19) possibly_damaging(0.503) TCGA-VQ-A8PB-01 11 74985226 74985226 C T ARRB1 Missense_Mutation p.C269Y 0.27 deleterious(0.01) possibly_damaging(0.595) TCGA-VQ-A8PB-01 11 76370682 76370682 C T LRRC32 Missense_Mutation p.R652H 0.25 deleterious(0) probably_damaging(0.964) TCGA-VQ-A8PB-01 11 76372417 76372417 C T LRRC32 Missense_Mutation p.A74T 0.07 tolerated(0.29) benign(0.158) TCGA-VQ-A8PB-01 11 78369501 78369502 - C TENM4 Frame_Shift_Ins p.R2638Afs*20 0.18 TCGA-VQ-A8PB-01 11 85375240 85375240 T C CREBZF Missense_Mutation p.E227G 0.26 deleterious(0.01) probably_damaging(0.996) TCGA-VQ-A8PB-01 11 8737335 8737335 G A ST5 Missense_Mutation p.R554C 0.27 deleterious(0.05) probably_damaging(0.964) TCGA-VQ-A8PB-01 11 89896814 89896814 T - NAALAD2 Intron 0.29 TCGA-VQ-A8PB-01 11 92495229 92495229 T A FAT3 Missense_Mutation p.Y1293N 0.36 probably_damaging(1) TCGA-VQ-A8PB-01 11 92531574 92531574 C T FAT3 Nonsense_Mutation p.R1799* 0.30 TCGA-VQ-A8PB-01 11 94328535 94328535 G A PIWIL4 Missense_Mutation p.R404H 0.10 tolerated(0.09) benign(0.159) TCGA-VQ-A8PB-01 12 101693781 101693781 C A UTP20 Silent p.L539L 0.05 TCGA-VQ-A8PB-01 12 102569379 102569379 A - PARPBP Frame_Shift_Del p.N315Ifs*10 0.25 TCGA-VQ-A8PB-01 12 104102307 104102307 T C STAB2 Silent p.C1427C 0.38 TCGA-VQ-A8PB-01 12 10999940 10999940 C T PRR4 Missense_Mutation p.D43N 0.35 deleterious_low_confidence(0) possibly_damaging(0.728) TCGA-VQ-A8PB-01 12 111902486 111902486 C T ATXN2 Missense_Mutation p.S1117N 0.19 benign(0.002) TCGA-VQ-A8PB-01 12 112610567 112610567 C T HECTD4 Missense_Mutation p.R3752H 0.28 probably_damaging(0.995) TCGA-VQ-A8PB-01 12 113382433 113382433 C T OAS3 Silent p.L205L 0.29 TCGA-VQ-A8PB-01 12 120654449 120654449 G A PXN Intron 0.50 TCGA-VQ-A8PB-01 12 120882649 120882649 G A TRIAP1 3'UTR 0.24 TCGA-VQ-A8PB-01 12 121176678 121176678 G A ACADS Missense_Mutation p.R330H 0.30 deleterious(0.03) probably_damaging(0.984) TCGA-VQ-A8PB-01 12 121768437 121768437 G T ANAPC5 Missense_Mutation p.S357R 0.07 tolerated(0.21) benign(0.02) TCGA-VQ-A8PB-01 12 12300314 12300314 C T LRP6 Missense_Mutation p.S1128N 0.32 tolerated(0.16) probably_damaging(0.956) TCGA-VQ-A8PB-01 12 124497227 124497227 C T ZNF664 Missense_Mutation p.A179V 0.18 tolerated(0.13) possibly_damaging(0.884) TCGA-VQ-A8PB-01 12 126138565 126138565 C - TMEM132B Frame_Shift_Del p.Q851Sfs*39 0.27 TCGA-VQ-A8PB-01 12 130184361 130184361 G A TMEM132D Missense_Mutation p.T321M 0.25 deleterious(0) probably_damaging(0.955) TCGA-VQ-A8PB-01 12 130184852 130184852 G A TMEM132D Silent p.D157D 0.37 TCGA-VQ-A8PB-01 12 13140057 13140057 C A HEBP1 Intron 0.32 TCGA-VQ-A8PB-01 12 132632305 132632305 G A NOC4L Missense_Mutation p.R194Q 0.35 tolerated(0.3) benign(0.01) TCGA-VQ-A8PB-01 12 13716136 13716136 C T GRIN2B Missense_Mutation p.E1346K 0.17 tolerated(0.18) benign(0.039) TCGA-VQ-A8PB-01 12 18435295 18435295 C T PIK3C2G Missense_Mutation p.R94C 0.23 deleterious_low_confidence(0.01) benign(0.163) TCGA-VQ-A8PB-01 12 27908478 27908478 T - MRPS35 3'UTR 0.28 TCGA-VQ-A8PB-01 12 2970521 2970521 G A FOXM1 Nonsense_Mutation p.R442* 0.40 TCGA-VQ-A8PB-01 12 31540716 31540716 G A DENND5B Missense_Mutation p.R1216C 0.22 deleterious(0) possibly_damaging(0.893) TCGA-VQ-A8PB-01 12 32884849 32884849 G A DNM1L Missense_Mutation p.R473H 0.23 deleterious(0.01) probably_damaging(0.996) TCGA-VQ-A8PB-01 12 40044098 40044098 G T C12orf40 Missense_Mutation p.V210F 0.29 deleterious(0.03) possibly_damaging(0.751) TCGA-VQ-A8PB-01 12 44124238 44124238 G T PUS7L Missense_Mutation p.L683I 0.25 deleterious(0) probably_damaging(1) TCGA-VQ-A8PB-01 12 47172458 47172458 C T SLC38A4 Missense_Mutation p.M273I 0.29 tolerated(0.57) benign(0) TCGA-VQ-A8PB-01 12 48191271 48191271 G A HDAC7 Missense_Mutation p.P158L 0.29 tolerated(0.08) benign(0.236) TCGA-VQ-A8PB-01 12 48442757 48442757 G A SENP1 Silent p.D522D 0.31 TCGA-VQ-A8PB-01 12 49318415 49318415 C T FKBP11 Missense_Mutation p.G71E 0.27 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PB-01 12 49426469 49426469 G A KMT2D Nonsense_Mutation p.Q4007* 0.35 TCGA-VQ-A8PB-01 12 49432560 49432560 C T KMT2D Missense_Mutation p.R2860H 0.38 probably_damaging(0.994) TCGA-VQ-A8PB-01 12 50190029 50190029 C T NCKAP5L Silent p.P538P 0.36 TCGA-VQ-A8PB-01 12 52374840 52374840 G - ACVR1B Frame_Shift_Del p.G224Afs*10 0.27 TCGA-VQ-A8PB-01 12 52635367 52635369 GAG - KRT7 In_Frame_Del p.E270del 0.25 TCGA-VQ-A8PB-01 12 52779352 52779352 G A KRT84 Silent p.Y6Y 0.22 TCGA-VQ-A8PB-01 12 52845400 52845400 C T KRT6B Missense_Mutation p.A155T 0.17 tolerated(0.85) benign(0.008) TCGA-VQ-A8PB-01 12 53848577 53848577 T C PCBP2 5'UTR 0.25 TCGA-VQ-A8PB-01 12 54686240 54686240 G A NFE2 Missense_Mutation p.P347L 0.24 tolerated(0.49) probably_damaging(0.998) TCGA-VQ-A8PB-01 12 54764873 54764873 C T ZNF385A Silent p.K224K 0.19 TCGA-VQ-A8PB-01 12 56397768 56397768 C - SUOX Frame_Shift_Del p.P200Lfs*4 0.25 TCGA-VQ-A8PB-01 12 56492423 56492423 C - ERBB3 Intron 0.25 TCGA-VQ-A8PB-01 12 57963152 57963152 T C KIF5A Silent p.D311D 0.31 TCGA-VQ-A8PB-01 12 6094775 6094775 G A VWF Silent p.S2285S 0.50 TCGA-VQ-A8PB-01 12 6105260 6105260 C T VWF Missense_Mutation p.G1991S 0.23 tolerated(0.05) probably_damaging(0.982) TCGA-VQ-A8PB-01 12 64041130 64041130 A G DPY19L2 Missense_Mutation p.W202R 0.18 deleterious(0.02) possibly_damaging(0.615) TCGA-VQ-A8PB-01 12 6687654 6687654 G - CHD4 Frame_Shift_Del p.K1681Rfs*3 0.14 TCGA-VQ-A8PB-01 12 67691381 67691383 CAA - CAND1 In_Frame_Del p.T231del 0.29 TCGA-VQ-A8PB-01 12 6838599 6838599 C T COPS7A Nonsense_Mutation p.R172* 0.22 TCGA-VQ-A8PB-01 12 70729267 70729267 A G CNOT2 Silent p.L233L 0.30 TCGA-VQ-A8PB-01 12 72070602 72070603 - A THAP2 Frame_Shift_Ins p.R137Efs*4 0.26 TCGA-VQ-A8PB-01 12 78400381 78400381 A G NAV3 Missense_Mutation p.T355A 0.37 deleterious_low_confidence(0.01) benign(0) TCGA-VQ-A8PB-01 12 81112136 81112136 G A MYF5 Splice_Site p.X168_splice 0.23 TCGA-VQ-A8PB-01 12 8289467 8289467 G A CLEC4A Nonsense_Mutation p.W178* 0.05 TCGA-VQ-A8PB-01 12 94975588 94975588 C T TMCC3 Missense_Mutation p.G269R 0.25 tolerated(0.09) probably_damaging(0.989) TCGA-VQ-A8PB-01 12 96380969 96380969 C T HAL Silent p.T309T 0.33 TCGA-VQ-A8PB-01 12 9907248 9907248 C A CD69 Missense_Mutation p.W142C 0.30 deleterious(0) probably_damaging(1) TCGA-VQ-A8PB-01 13 113772778 113772778 C T F7 Missense_Mutation p.A286V 0.10 tolerated(0.38) benign(0.015) TCGA-VQ-A8PB-01 13 19748079 19748079 G A TUBA3C Missense_Mutation p.A426V 0.28 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-VQ-A8PB-01 13 22113511 22113511 G A MICU2 Silent p.I132I 0.33 TCGA-VQ-A8PB-01 13 23911375 23911375 G A SACS Missense_Mutation p.R2214C 0.27 benign(0.006) TCGA-VQ-A8PB-01 13 24233246 24233246 C T TNFRSF19 Missense_Mutation p.T168M 0.32 tolerated(0.13) probably_damaging(0.983) TCGA-VQ-A8PB-01 13 25671682 25671682 G A PABPC3 Missense_Mutation p.R449H 0.28 tolerated(0.51) benign(0.002) TCGA-VQ-A8PB-01 13 25672306 25672306 A - PABPC3 3'UTR 0.38 TCGA-VQ-A8PB-01 13 27260037 27260037 C A WASF3 3'UTR 0.24 TCGA-VQ-A8PB-01 13 32691523 32691523 G A FRY Missense_Mutation p.R126H 0.26 tolerated(0.11) benign(0.217) TCGA-VQ-A8PB-01 13 35615209 35615209 G A NBEA Missense_Mutation p.R145Q 0.43 deleterious(0) possibly_damaging(0.511) TCGA-VQ-A8PB-01 13 39546706 39546706 T C STOML3 Missense_Mutation p.I85M 0.28 tolerated(0.07) benign(0.02) TCGA-VQ-A8PB-01 13 41800645 41800645 G A MTRF1 Missense_Mutation p.R350C 0.30 deleterious(0.04) benign(0.064) TCGA-VQ-A8PB-01 13 45563377 45563377 C T NUFIP1 Silent p.S65S 0.28 TCGA-VQ-A8PB-01 13 47011853 47011853 T C PPP1R2P4 RNA 0.42 TCGA-VQ-A8PB-01 13 52604966 52604966 G A UTP14C Missense_Mutation p.A676T 0.30 tolerated(0.05) benign(0.103) TCGA-VQ-A8PB-01 13 53420902 53420902 G T PCDH8 Missense_Mutation p.A557D 0.40 tolerated(0.21) benign(0.004) TCGA-VQ-A8PB-01 13 53421598 53421598 C T PCDH8 Missense_Mutation p.R325Q 0.14 tolerated(1) benign(0.003) TCGA-VQ-A8PB-01 13 84453497 84453497 C T SLITRK1 3'UTR 0.32 TCGA-VQ-A8PB-01 13 88329040 88329040 G A SLITRK5 Missense_Mutation p.G466D 0.32 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8PB-01 13 95840718 95840718 C A ABCC4 Nonsense_Mutation p.G448* 0.22 TCGA-VQ-A8PB-01 13 99481572 99481572 C T DOCK9 Missense_Mutation p.D1629N 0.28 tolerated(0.31) probably_damaging(0.997) TCGA-VQ-A8PB-01 13 99554743 99554743 A G DOCK9 Silent p.V393V 0.17 TCGA-VQ-A8PB-01 14 105236697 105236697 G A AKT1 Missense_Mutation p.S475L 0.38 tolerated(0.06) possibly_damaging(0.596) TCGA-VQ-A8PB-01 14 105409481 105409481 C T AHNAK2 Missense_Mutation p.V4103I 0.30 benign(0.055) TCGA-VQ-A8PB-01 14 105521847 105521847 C T GPR132 5'UTR 0.33 TCGA-VQ-A8PB-01 14 105609131 105609131 G A JAG2 Silent p.G1206G 0.16 TCGA-VQ-A8PB-01 14 105612739 105612739 G A JAG2 Missense_Mutation p.R898C 0.25 deleterious(0.01) possibly_damaging(0.77) TCGA-VQ-A8PB-01 14 20444274 20444274 C T OR4K15 Silent p.D199D 0.08 TCGA-VQ-A8PB-01 14 21052406 21052406 C A RNASE11 Silent p.L76L 0.25 TCGA-VQ-A8PB-01 14 21623218 21623218 G A OR5AU1 Missense_Mutation p.R323C 0.27 deleterious(0) benign(0.019) TCGA-VQ-A8PB-01 14 22928103 22928103 C T TRDJ3 Nonsense_Mutation p.R6* 0.18 TCGA-VQ-A8PB-01 14 23346254 23346254 C T LRP10 Nonsense_Mutation p.R554* 0.27 TCGA-VQ-A8PB-01 14 23898465 23898465 G A MYH7 Silent p.Y410Y 0.27 TCGA-VQ-A8PB-01 14 24621008 24621008 G A RNF31 Missense_Mutation p.R646Q 0.14 tolerated(0.1) benign(0.275) TCGA-VQ-A8PB-01 14 24886463 24886463 C T NYNRIN Silent p.S1836S 0.19 TCGA-VQ-A8PB-01 14 31570023 31570023 A - HECTD1 3'UTR 0.28 TCGA-VQ-A8PB-01 14 32315690 32315690 T A NUBPL Missense_Mutation p.V236D 0.20 deleterious(0) probably_damaging(0.979) TCGA-VQ-A8PB-01 14 34269620 34269620 G A NPAS3 Missense_Mutation p.G703S 0.33 tolerated_low_confidence(0.37) benign(0.008) TCGA-VQ-A8PB-01 14 39721989 39721989 C T MIA2 Silent p.H535H 0.24 TCGA-VQ-A8PB-01 14 45645319 45645319 G A FANCM Missense_Mutation p.S1121N 0.29 tolerated(0.96) benign(0.001) TCGA-VQ-A8PB-01 14 51561062 51561062 G A TRIM9 Missense_Mutation p.P199L 0.26 deleterious(0) probably_damaging(0.936) TCGA-VQ-A8PB-01 14 52534743 52534743 G A NID2 Silent p.L123L 0.27 TCGA-VQ-A8PB-01 14 53513450 53513480 AATCAGTTTTAGGCCATTCATGTCCTTCAAG TCAGTTTTAGGCCATTCATGTCCTTCA DDHD1 3'UTR 0.26 TCGA-VQ-A8PB-01 14 54896992 54896992 A - CNIH1 Frame_Shift_Del p.Y132Tfs*6 0.32 TCGA-VQ-A8PB-01 14 55255722 55255722 C T SAMD4A 3'UTR 0.17 TCGA-VQ-A8PB-01 14 57271049 57271049 G - OTX2 Frame_Shift_Del p.R44Gfs*15 0.21 TCGA-VQ-A8PB-01 14 59930784 59930784 G A GPR135 Silent p.Y387Y 0.28 TCGA-VQ-A8PB-01 14 60587958 60587958 C T PCNXL4 Missense_Mutation p.R429C 0.28 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PB-01 14 64488704 64488704 A - SYNE2 Frame_Shift_Del p.S1830Vfs*11 0.16 TCGA-VQ-A8PB-01 14 64689935 64689935 A G SYNE2 Missense_Mutation p.Q6740R 0.29 probably_damaging(0.996) TCGA-VQ-A8PB-01 14 64735576 64735576 G A ESR2 Missense_Mutation p.R197W 0.36 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PB-01 14 67817389 67817389 C T ATP6V1D Missense_Mutation p.E60K 0.29 tolerated(0.23) benign(0.178) TCGA-VQ-A8PB-01 14 68244314 68244314 G A ZFYVE26 Nonsense_Mutation p.R1646* 0.27 TCGA-VQ-A8PB-01 14 70238205 70238205 T - SRSF5 3'UTR 0.28 TCGA-VQ-A8PB-01 14 89178715 89178715 G A EML5 Silent p.N519N 0.19 TCGA-VQ-A8PB-01 14 90754655 90754656 - A NRDE2 Frame_Shift_Ins p.D1022* 0.30 TCGA-VQ-A8PB-01 14 94088050 94088051 AA - UNC79 Frame_Shift_Del p.K1316Afs*10 0.25 TCGA-VQ-A8PB-01 14 94914645 94914645 C A SERPINA11 Missense_Mutation p.S156I 0.17 deleterious(0.04) benign(0.011) TCGA-VQ-A8PB-01 14 96752248 96752248 G A ATG2B Silent p.A2027A 0.36 TCGA-VQ-A8PB-01 15 20643956 20643956 G A HERC2P3 RNA 0.21 TCGA-VQ-A8PB-01 15 22928464 22928464 T C CYFIP1 Missense_Mutation p.V114A 0.24 deleterious(0.03) benign(0.102) TCGA-VQ-A8PB-01 15 27128316 27128316 G A GABRA5 Missense_Mutation p.R71H 0.07 tolerated(0.07) possibly_damaging(0.696) TCGA-VQ-A8PB-01 15 32928150 32928150 A - ARHGAP11A Intron 0.21 TCGA-VQ-A8PB-01 15 33905538 33905538 G A RYR3 Silent p.G773G 0.27 TCGA-VQ-A8PB-01 15 34064242 34064242 C T RYR3 Nonsense_Mutation p.R2980* 0.25 TCGA-VQ-A8PB-01 15 34109067 34109067 C T RYR3 Missense_Mutation p.R3503C 0.19 possibly_damaging(0.677) TCGA-VQ-A8PB-01 15 42028642 42028642 C T MGA Missense_Mutation p.R1394C 0.37 deleterious(0) probably_damaging(0.932) TCGA-VQ-A8PB-01 15 42105255 42105255 G A MAPKBP1 Missense_Mutation p.E259K 0.26 deleterious(0) possibly_damaging(0.641) TCGA-VQ-A8PB-01 15 43622261 43622261 C - LCMT2 Frame_Shift_Del p.E143Sfs*49 0.25 TCGA-VQ-A8PB-01 15 44843089 44843091 GAT - EIF3J In_Frame_Del p.D57del 0.35 TCGA-VQ-A8PB-01 15 52497186 52497186 C T MYO5C Missense_Mutation p.G1566S 0.29 deleterious(0.01) possibly_damaging(0.738) TCGA-VQ-A8PB-01 15 59806562 59806562 G A FAM81A Missense_Mutation p.R242Q 0.32 tolerated(0.05) possibly_damaging(0.701) TCGA-VQ-A8PB-01 15 60758891 60758891 C T NARG2 Missense_Mutation p.E144K 0.34 tolerated(0.72) benign(0.23) TCGA-VQ-A8PB-01 15 65495716 65495716 G A CILP Missense_Mutation p.P338S 0.26 deleterious(0) probably_damaging(1) TCGA-VQ-A8PB-01 15 68118468 68118468 C T SKOR1 Missense_Mutation p.A287V 0.35 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-VQ-A8PB-01 15 73552783 73552783 G A NEO1 Missense_Mutation p.R792H 0.31 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PB-01 15 74315713 74315713 C A PML Missense_Mutation p.L383M 0.44 deleterious(0) probably_damaging(1) TCGA-VQ-A8PB-01 15 74922131 74922131 C T CLK3 Silent p.R608R 0.24 TCGA-VQ-A8PB-01 15 75108784 75108784 G A LMAN1L Missense_Mutation p.R116Q 0.35 tolerated(1) benign(0.008) TCGA-VQ-A8PB-01 15 75500967 75500967 G A C15orf39 Missense_Mutation p.A860T 0.40 tolerated(0.26) benign(0.127) TCGA-VQ-A8PB-01 15 75980862 75980862 G A CSPG4 Silent p.T848T 0.25 TCGA-VQ-A8PB-01 15 75981248 75981248 C - CSPG4 Frame_Shift_Del p.V720Wfs*22 0.27 TCGA-VQ-A8PB-01 15 78893986 78893986 G - CHRNA3 Frame_Shift_Del p.P333Rfs*10 0.27 TCGA-VQ-A8PB-01 15 79059345 79059345 T C ADAMTS7 Missense_Mutation p.T970A 0.34 tolerated(0.39) benign(0.013) TCGA-VQ-A8PB-01 15 79382887 79382887 G A RASGRF1 5'UTR 0.35 TCGA-VQ-A8PB-01 15 82336383 82336383 G - MEX3B Frame_Shift_Del p.G277Afs*49 0.28 TCGA-VQ-A8PB-01 15 89383359 89383359 G A ACAN Missense_Mutation p.A191T 0.42 deleterious(0) unknown(0) TCGA-VQ-A8PB-01 15 91310208 91310208 A - BLM Frame_Shift_Del p.D757Tfs*4 0.20 TCGA-VQ-A8PB-01 15 91449976 91449976 C - MAN2A2 Frame_Shift_Del p.R283Afs*28 0.31 TCGA-VQ-A8PB-01 15 99500617 99500617 C T IGF1R Silent p.N1350N 0.26 TCGA-VQ-A8PB-01 16 11370299 11370299 C T PRM2 5'UTR 0.33 TCGA-VQ-A8PB-01 16 1411880 1411880 T C GNPTG Missense_Mutation p.Y81H 0.26 deleterious(0) probably_damaging(1) TCGA-VQ-A8PB-01 16 15715622 15715622 G A KIAA0430 Silent p.T869T 0.34 TCGA-VQ-A8PB-01 16 1816085 1816085 C T MAPK8IP3 Silent p.N856N 0.36 TCGA-VQ-A8PB-01 16 1837825 1837825 C T NUBP2 Missense_Mutation p.T161M 0.26 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PB-01 16 19126266 19126266 C T ITPRIPL2 Silent p.S161S 0.28 TCGA-VQ-A8PB-01 16 2202999 2202999 G A RAB26 Missense_Mutation p.A182T 0.36 tolerated(0.9) benign(0.001) TCGA-VQ-A8PB-01 16 23637664 23637664 C T PALB2 Missense_Mutation p.G881S 0.26 deleterious(0) probably_damaging(0.949) TCGA-VQ-A8PB-01 16 23690537 23690537 G T PLK1 Missense_Mutation p.R95M 0.29 deleterious(0.03) possibly_damaging(0.667) TCGA-VQ-A8PB-01 16 25180468 25180468 T C LCMT1 Silent p.I242I 0.30 TCGA-VQ-A8PB-01 16 2546875 2546875 C T RP11-20I23.1 Silent p.R242R 0.20 TCGA-VQ-A8PB-01 16 27454305 27454305 C T IL21R Silent p.N125N 0.26 TCGA-VQ-A8PB-01 16 27460675 27460675 G A IL21R 3'UTR 0.33 TCGA-VQ-A8PB-01 16 27503681 27503681 G A GTF3C1 Silent p.C1043C 0.30 TCGA-VQ-A8PB-01 16 27549607 27549607 C - GTF3C1 Frame_Shift_Del p.D168Ifs*4 0.18 TCGA-VQ-A8PB-01 16 28620159 28620159 G A SULT1A1 Silent p.D6D 0.18 TCGA-VQ-A8PB-01 16 28843509 28843510 - C ATXN2L Intron 0.10 TCGA-VQ-A8PB-01 16 29979455 29979455 G A TMEM219 Silent p.Q155Q 0.31 TCGA-VQ-A8PB-01 16 30199133 30199133 G A CORO1A Missense_Mutation p.V282I 0.21 tolerated(0.45) benign(0.409) TCGA-VQ-A8PB-01 16 30409520 30409520 G A ZNF48 Missense_Mutation p.D317N 0.27 tolerated(0.19) probably_damaging(0.998) TCGA-VQ-A8PB-01 16 30982946 30982946 G A SETD1A Silent p.T1088T 0.18 TCGA-VQ-A8PB-01 16 30991082 30991082 C T SETD1A Silent p.A1325A 0.40 TCGA-VQ-A8PB-01 16 31234164 31234164 G A TRIM72 Missense_Mutation p.A253T 0.48 deleterious(0.03) benign(0.125) TCGA-VQ-A8PB-01 16 321540 321540 T C RGS11 Missense_Mutation p.E229G 0.26 deleterious(0.01) probably_damaging(0.917) TCGA-VQ-A8PB-01 16 3642772 3642772 A G SLX4 Missense_Mutation p.L752P 0.22 deleterious(0) probably_damaging(1) TCGA-VQ-A8PB-01 16 3900610 3900610 C T CREBBP Silent p.A162A 0.38 TCGA-VQ-A8PB-01 16 4659775 4659775 C T UBALD1 Silent p.P131P 0.45 TCGA-VQ-A8PB-01 16 47156574 47156574 T - NETO2 Frame_Shift_Del p.A217Lfs*5 0.25 TCGA-VQ-A8PB-01 16 4755121 4755121 G A ANKS3 Silent p.G281G 0.37 TCGA-VQ-A8PB-01 16 47684785 47684785 A - PHKB Frame_Shift_Del p.G644Efs*2 0.36 TCGA-VQ-A8PB-01 16 50388818 50388818 G A BRD7 Nonsense_Mutation p.R92* 0.30 TCGA-VQ-A8PB-01 16 5106177 5106177 G A C16orf89 Nonsense_Mutation p.Q214* 0.17 TCGA-VQ-A8PB-01 16 55727937 55727937 G A SLC6A2 Missense_Mutation p.A312T 0.22 deleterious(0.01) probably_damaging(0.99) TCGA-VQ-A8PB-01 16 57060195 57060196 - C NLRC5 Frame_Shift_Ins p.G450Wfs*105 0.17 TCGA-VQ-A8PB-01 16 57397487 57397487 A G CCL22 Missense_Mutation p.K90R 0.22 tolerated(0.26) benign(0.038) TCGA-VQ-A8PB-01 16 58426609 58426609 G A GINS3 Missense_Mutation p.R35H 0.27 deleterious(0.02) possibly_damaging(0.899) TCGA-VQ-A8PB-01 16 66642315 66642315 C T CMTM3 Missense_Mutation p.A84V 0.24 tolerated(0.1) possibly_damaging(0.844) TCGA-VQ-A8PB-01 16 67645338 67645339 - A CTCF Frame_Shift_Ins p.T204Nfs*26 0.25 TCGA-VQ-A8PB-01 16 67695492 67695492 C T PARD6A Silent p.G66G 0.25 TCGA-VQ-A8PB-01 16 69201045 69201045 G A CIRH1A Missense_Mutation p.R634Q 0.24 tolerated(0.1) benign(0.05) TCGA-VQ-A8PB-01 16 71101160 71101160 G A HYDIN Intron 0.35 TCGA-VQ-A8PB-01 16 71570593 71570593 A - CHST4 Frame_Shift_Del p.M7* 0.24 TCGA-VQ-A8PB-01 16 75654554 75654554 G A ADAT1 Silent p.C48C 0.35 TCGA-VQ-A8PB-01 16 784220 784220 C T NARFL Intron 0.35 TCGA-VQ-A8PB-01 16 84212935 84212935 G A TAF1C Missense_Mutation p.S741L 0.21 tolerated(0.33) benign(0.014) TCGA-VQ-A8PB-01 16 84216011 84216011 C T TAF1C Missense_Mutation p.R173H 0.40 deleterious(0.04) probably_damaging(1) TCGA-VQ-A8PB-01 16 84224814 84224814 G A ADAD2 5'UTR 0.39 TCGA-VQ-A8PB-01 16 85695090 85695090 G A GSE1 Missense_Mutation p.G660E 0.41 deleterious(0.03) possibly_damaging(0.889) TCGA-VQ-A8PB-01 16 89346569 89346569 G A ANKRD11 Silent p.P2127P 0.42 TCGA-VQ-A8PB-01 16 89724594 89724594 A G SPATA33 Intron 0.17 TCGA-VQ-A8PB-01 16 89924875 89924875 C T SPIRE2 Missense_Mutation p.A411V 0.25 deleterious(0) probably_damaging(1) TCGA-VQ-A8PB-01 17 16466547 16466547 C A ZNF287 Splice_Site p.X210_splice 0.05 TCGA-VQ-A8PB-01 17 17801941 17801941 C T TOM1L2 Missense_Mutation p.R62Q 0.33 deleterious(0) benign(0.273) TCGA-VQ-A8PB-01 17 18140056 18140056 C T LLGL1 Silent p.D496D 0.29 TCGA-VQ-A8PB-01 17 19641649 19641649 G - ALDH3A1 Frame_Shift_Del p.P445Rfs*6 0.33 TCGA-VQ-A8PB-01 17 21319479 21319479 C T KCNJ12 Silent p.D275D 0.17 TCGA-VQ-A8PB-01 17 2203344 2203344 G A SMG6 Missense_Mutation p.R235C 0.26 deleterious_low_confidence(0.02) benign(0.009) TCGA-VQ-A8PB-01 17 2298556 2298556 A G MNT Missense_Mutation p.I89T 0.47 tolerated(0.07) probably_damaging(0.991) TCGA-VQ-A8PB-01 17 2596114 2596114 C T CLUH Missense_Mutation p.R1052Q 0.37 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PB-01 17 26656206 26656206 G T IFT20 Missense_Mutation p.L130I 0.04 tolerated(0.07) probably_damaging(0.923) TCGA-VQ-A8PB-01 17 27308766 27308766 C T SEZ6 Missense_Mutation p.R116H 0.24 deleterious(0.04) benign(0.115) TCGA-VQ-A8PB-01 17 3119203 3119203 T C OR1A1 Missense_Mutation p.C97R 0.38 deleterious(0) probably_damaging(0.954) TCGA-VQ-A8PB-01 17 34934427 34934427 G A GGNBP2 Missense_Mutation p.C219Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PB-01 17 36499395 36499395 G - GPR179 Frame_Shift_Del p.P93Qfs*57 0.09 TCGA-VQ-A8PB-01 17 37842226 37842226 G T PGAP3 Silent p.T76T 0.30 TCGA-VQ-A8PB-01 17 37880220 37880220 T C ERBB2 Missense_Mutation p.L755S 0.15 deleterious(0) probably_damaging(1) TCGA-VQ-A8PB-01 17 38240128 38240128 C T THRA Missense_Mutation p.T88I 0.30 tolerated(0.09) possibly_damaging(0.867) TCGA-VQ-A8PB-01 17 38907264 38907264 G C KRT25 Missense_Mutation p.T300S 0.27 tolerated(0.13) possibly_damaging(0.491) TCGA-VQ-A8PB-01 17 38907516 38907516 G - KRT25 Frame_Shift_Del p.V246Wfs*7 0.19 TCGA-VQ-A8PB-01 17 38953513 38953513 G A KRT28 Silent p.C237C 0.44 TCGA-VQ-A8PB-01 17 39155854 39155854 G T KRTAP3-2 Silent p.T84T 0.14 TCGA-VQ-A8PB-01 17 3917678 3917678 G A ZZEF1 Silent p.S2759S 0.38 TCGA-VQ-A8PB-01 17 39535640 39535640 C T KRT34 Missense_Mutation p.A323T 0.22 tolerated(0.29) benign(0.2) TCGA-VQ-A8PB-01 17 40765014 40765014 G A TUBG1 Missense_Mutation p.E177K 0.27 tolerated(0.08) benign(0.13) TCGA-VQ-A8PB-01 17 40848118 40848118 G A CNTNAP1 Missense_Mutation p.G1141D 0.25 tolerated(0.05) probably_damaging(1) TCGA-VQ-A8PB-01 17 41362044 41362044 C T NBR1 Missense_Mutation p.T951I 0.33 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PB-01 17 41955114 41955114 G - MPP2 3'UTR 0.19 TCGA-VQ-A8PB-01 17 41960701 41960701 G A MPP2 Missense_Mutation p.T58M 0.58 tolerated(0.12) possibly_damaging(0.714) TCGA-VQ-A8PB-01 17 42426883 42426883 C T GRN Silent p.T76T 0.20 TCGA-VQ-A8PB-01 17 43317844 43317844 G T FMNL1 Missense_Mutation p.R361M 0.38 deleterious(0) unknown(0) TCGA-VQ-A8PB-01 17 43332972 43332972 G A SPATA32 Missense_Mutation p.R193W 0.27 deleterious(0) possibly_damaging(0.798) TCGA-VQ-A8PB-01 17 43531269 43531269 G A PLEKHM1 Missense_Mutation p.A650V 0.14 tolerated(0.37) benign(0.002) TCGA-VQ-A8PB-01 17 44109647 44109647 G A KANSL1 Silent p.D952D 0.16 TCGA-VQ-A8PB-01 17 4448399 4448399 C T MYBBP1A Silent p.E744E 0.24 TCGA-VQ-A8PB-01 17 45663016 45663016 C T NPEPPS Missense_Mutation p.R267C 0.21 deleterious(0) probably_damaging(0.958) TCGA-VQ-A8PB-01 17 4711381 4711381 G A PLD2 Missense_Mutation p.G71D 0.29 tolerated(1) benign(0.042) TCGA-VQ-A8PB-01 17 48191638 48191638 G - SAMD14 Frame_Shift_Del p.S314Afs*67 0.29 TCGA-VQ-A8PB-01 17 56581748 56581748 G A MTMR4 Silent p.C467C 0.42 TCGA-VQ-A8PB-01 17 59112099 59112099 C T BCAS3 Silent p.F585F 0.31 TCGA-VQ-A8PB-01 17 61877936 61877936 A - DDX42 Frame_Shift_Del p.I196Sfs*29 0.23 TCGA-VQ-A8PB-01 17 66038225 66038225 G T KPNA2 Missense_Mutation p.Q109H 0.14 tolerated(0.23) benign(0.013) TCGA-VQ-A8PB-01 17 66251859 66251859 G A AMZ2 Missense_Mutation p.G257R 0.28 tolerated(0.24) possibly_damaging(0.545) TCGA-VQ-A8PB-01 17 70120428 70120429 - C SOX9 Frame_Shift_Ins p.T478Hfs*100 0.25 TCGA-VQ-A8PB-01 17 7139894 7139897 GAGA - PHF23 Frame_Shift_Del p.S117Vfs*14 0.12 TCGA-VQ-A8PB-01 17 71420083 71420083 C T SDK2 Missense_Mutation p.D578N 0.31 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8PB-01 17 72768370 72768370 C T NAT9 Silent p.A127A 0.35 TCGA-VQ-A8PB-01 17 7329691 7329691 C T C17orf74 Silent p.R127R 0.07 TCGA-VQ-A8PB-01 17 73498264 73498264 G A CASKIN2 Missense_Mutation p.P964L 0.45 deleterious(0) probably_damaging(0.982) TCGA-VQ-A8PB-01 17 73654502 73654502 C A RECQL5 Missense_Mutation p.G342V 0.06 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8PB-01 17 73753154 73753154 C T ITGB4 Silent p.R1728R 0.23 TCGA-VQ-A8PB-01 17 73805997 73805997 C T UNK Silent p.D87D 0.31 TCGA-VQ-A8PB-01 17 73909855 73909855 G A FBF1 Nonsense_Mutation p.R1044* 0.27 TCGA-VQ-A8PB-01 17 74309004 74309004 C A PRPSAP1 Missense_Mutation p.G316C 0.34 deleterious(0) probably_damaging(0.924) TCGA-VQ-A8PB-01 17 77075587 77075587 G A ENGASE Missense_Mutation p.V145M 0.19 tolerated(0.13) benign(0.016) TCGA-VQ-A8PB-01 17 7942758 7942758 C T ALOX15B Missense_Mutation p.R68C 0.45 deleterious(0) probably_damaging(0.988) TCGA-VQ-A8PB-01 17 7978925 7978925 G A ALOX12B Missense_Mutation p.R548W 0.41 deleterious(0.01) probably_damaging(0.997) TCGA-VQ-A8PB-01 17 8159891 8159891 C T PFAS Missense_Mutation p.R291W 0.27 deleterious(0.01) possibly_damaging(0.67) TCGA-VQ-A8PB-01 17 8215550 8215550 C - ARHGEF15 Frame_Shift_Del p.P66Qfs*116 0.45 TCGA-VQ-A8PB-01 18 21096361 21096361 C T C18orf8 Silent p.S209S 0.30 TCGA-VQ-A8PB-01 18 21710311 21710311 G A TTC39C Missense_Mutation p.R518H 0.26 tolerated(0.16) benign(0.002) TCGA-VQ-A8PB-01 18 34205516 34205516 C - FHOD3 Frame_Shift_Del p.S336Vfs*138 0.22 TCGA-VQ-A8PB-01 18 39617741 39617741 G A PIK3C3 Missense_Mutation p.R642H 0.32 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8PB-01 18 40323631 40323632 - A RIT2 Frame_Shift_Ins p.E161* 0.24 TCGA-VQ-A8PB-01 18 43510681 43510681 G A EPG5 Silent p.D791D 0.23 TCGA-VQ-A8PB-01 18 50866235 50866235 C T DCC Missense_Mutation p.R773C 0.18 deleterious(0) probably_damaging(0.994) TCGA-VQ-A8PB-01 18 56897710 56897710 C A GRP 3'UTR 0.27 TCGA-VQ-A8PB-01 18 5890365 5890365 G - TMEM200C Frame_Shift_Del p.V567Ffs*37 0.29 TCGA-VQ-A8PB-01 18 60639886 60639887 - A PHLPP1 Frame_Shift_Ins p.T1236Nfs*38 0.23 TCGA-VQ-A8PB-01 18 61264394 61264394 T C SERPINB13 Silent p.L325L 0.19 TCGA-VQ-A8PB-01 18 76757400 76757400 G A SALL3 3'Flank 0.22 TCGA-VQ-A8PB-01 18 77659730 77659730 G A KCNG2 Missense_Mutation p.A439T 0.29 tolerated(0.19) benign(0.001) TCGA-VQ-A8PB-01 19 11664573 11664573 C T ELOF1 Silent p.A80A 0.18 TCGA-VQ-A8PB-01 19 1257044 1257044 C T MIDN Missense_Mutation p.R394W 0.32 deleterious(0) possibly_damaging(0.689) TCGA-VQ-A8PB-01 19 12822141 12822141 A G TNPO2 Silent p.D362D 0.07 TCGA-VQ-A8PB-01 19 14755031 14755031 G T EMR3 Silent p.G313G 0.33 TCGA-VQ-A8PB-01 19 1584558 1584558 G A MBD3 Missense_Mutation p.A130V 0.36 tolerated(0.12) probably_damaging(0.997) TCGA-VQ-A8PB-01 19 1599554 1599554 G A UQCR11 Missense_Mutation p.P19L 0.30 deleterious(0.02) benign(0.282) TCGA-VQ-A8PB-01 19 1605415 1605415 G A UQCR11 5'UTR 0.45 TCGA-VQ-A8PB-01 19 16059824 16059824 A G OR10H4 Missense_Mutation p.S3G 0.19 tolerated(0.62) benign(0) TCGA-VQ-A8PB-01 19 16059835 16059835 T C OR10H4 Silent p.Y6Y 0.21 TCGA-VQ-A8PB-01 19 16059978 16059978 A G OR10H4 Missense_Mutation p.H54R 0.20 tolerated(1) benign(0.001) TCGA-VQ-A8PB-01 19 16060089 16060089 A G OR10H4 Missense_Mutation p.H91R 0.15 tolerated(1) benign(0.001) TCGA-VQ-A8PB-01 19 18085082 18085083 - G KCNN1 Frame_Shift_Ins p.V131Gfs*45 0.20 TCGA-VQ-A8PB-01 19 18896845 18896847 GTC - COMP In_Frame_Del p.D473del 0.45 TCGA-VQ-A8PB-01 19 18995006 18995006 G A CERS1 Silent p.G160G 0.17 TCGA-VQ-A8PB-01 19 21933751 21933751 G A ZNF100 Intron 0.36 TCGA-VQ-A8PB-01 19 2389841 2389841 G A TMPRSS9 Missense_Mutation p.A20T 0.22 tolerated_low_confidence(0.15) benign(0.018) TCGA-VQ-A8PB-01 19 2416730 2416730 T C TMPRSS9 Missense_Mutation p.L613P 0.36 deleterious(0) probably_damaging(1) TCGA-VQ-A8PB-01 19 2732691 2732691 C A SLC39A3 3'UTR 0.33 TCGA-VQ-A8PB-01 19 34838805 34838805 C T KIAA0355 Missense_Mutation p.R849C 0.16 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-VQ-A8PB-01 19 35850718 35850718 T C FFAR3 Missense_Mutation p.L309P 0.21 tolerated(0.1) benign(0.005) TCGA-VQ-A8PB-01 19 36214714 36214714 G - KMT2B Frame_Shift_Del p.A1049Rfs*133 0.38 TCGA-VQ-A8PB-01 19 36218451 36218451 G - KMT2B Frame_Shift_Del p.G1412Afs*10 0.24 TCGA-VQ-A8PB-01 19 36276148 36276148 G A ARHGAP33 Silent p.T593T 0.24 TCGA-VQ-A8PB-01 19 36278096 36278096 C - ARHGAP33 Frame_Shift_Del p.P717Lfs*79 0.27 TCGA-VQ-A8PB-01 19 36278864 36278864 G A ARHGAP33 Missense_Mutation p.D972N 0.25 deleterious_low_confidence(0) benign(0.281) TCGA-VQ-A8PB-01 19 38056979 38056979 C A ZNF571 Missense_Mutation p.K117N 0.32 tolerated(0.4) benign(0.048) TCGA-VQ-A8PB-01 19 38230043 38230043 T - ZNF573 Frame_Shift_Del p.T450Pfs*74 0.22 TCGA-VQ-A8PB-01 19 38976294 38976294 C T RYR1 Missense_Mutation p.R1667C 0.46 benign(0.004) TCGA-VQ-A8PB-01 19 3964783 3964783 A T DAPK3 Missense_Mutation p.V90D 0.32 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PB-01 19 40368653 40368653 T C FCGBP Missense_Mutation p.N4232S 0.15 possibly_damaging(0.621) TCGA-VQ-A8PB-01 19 40398280 40398280 G A FCGBP Silent p.P2229P 0.15 TCGA-VQ-A8PB-01 19 41860547 41860547 C T B9D2 3'UTR 0.33 TCGA-VQ-A8PB-01 19 41938158 41938158 G A ATP5SL Missense_Mutation p.T257I 0.40 deleterious(0.04) benign(0.009) TCGA-VQ-A8PB-01 19 42219646 42219646 G A CEACAM5 Missense_Mutation p.A261T 0.42 tolerated(0.37) unknown(0) TCGA-VQ-A8PB-01 19 42794062 42794062 G A CIC Missense_Mutation p.E475K 0.27 benign(0.358) TCGA-VQ-A8PB-01 19 4292734 4292734 C T TMIGD2 Silent p.A237A 0.30 TCGA-VQ-A8PB-01 19 43031217 43031217 C T CEACAM1 Missense_Mutation p.A134T 0.04 tolerated(0.19) benign(0.129) TCGA-VQ-A8PB-01 19 44661637 44661637 G A ZNF234 Missense_Mutation p.G490R 0.32 deleterious(0) probably_damaging(1) TCGA-VQ-A8PB-01 19 44680351 44680351 T C ZNF226 Silent p.C312C 0.27 TCGA-VQ-A8PB-01 19 44933212 44933212 G A ZNF229 Missense_Mutation p.R582W 0.31 tolerated(0.07) benign(0.017) TCGA-VQ-A8PB-01 19 44934249 44934249 A G ZNF229 Missense_Mutation p.I236T 0.31 tolerated(0.69) benign(0) TCGA-VQ-A8PB-01 19 45810056 45810058 CTT - CKM In_Frame_Del p.K366del 0.36 TCGA-VQ-A8PB-01 19 45899666 45899666 C T PPP1R13L Silent p.P247P 0.34 TCGA-VQ-A8PB-01 19 45973883 45973883 G A FOSB Intron 0.34 TCGA-VQ-A8PB-01 19 47197162 47197162 C T PRKD2 Missense_Mutation p.A516T 0.25 tolerated(0.3) possibly_damaging(0.825) TCGA-VQ-A8PB-01 19 47424921 47424921 C T ARHGAP35 Nonsense_Mutation p.R997* 0.30 TCGA-VQ-A8PB-01 19 4793692 4793692 C T FEM1A Missense_Mutation p.A609V 0.18 tolerated(0.08) possibly_damaging(0.731) TCGA-VQ-A8PB-01 19 48385415 48385415 A - SULT2A1 Frame_Shift_Del p.F133Sfs*5 0.24 TCGA-VQ-A8PB-01 19 4859943 4859943 G C PLIN3 Missense_Mutation p.P54A 0.22 deleterious(0.01) probably_damaging(0.984) TCGA-VQ-A8PB-01 19 49142189 49142189 C T CA11 Missense_Mutation p.R306Q 0.44 tolerated(0.09) probably_damaging(0.953) TCGA-VQ-A8PB-01 19 49253906 49253906 C T FUT1 Silent p.P211P 0.25 TCGA-VQ-A8PB-01 19 49391390 49391390 G A TULP2 Silent p.H255H 0.33 TCGA-VQ-A8PB-01 19 49925808 49925808 G A PTH2 Missense_Mutation p.R74C 0.32 deleterious_low_confidence(0) probably_damaging(0.942) TCGA-VQ-A8PB-01 19 50138860 50138860 G A RRAS Silent p.G210G 0.35 TCGA-VQ-A8PB-01 19 50216758 50216758 C T CPT1C Missense_Mutation p.R770C 0.31 tolerated(0.19) benign(0.002) TCGA-VQ-A8PB-01 19 5212208 5212208 C T PTPRS Missense_Mutation p.R1608Q 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-VQ-A8PB-01 19 52496845 52496845 A G ZNF615 Missense_Mutation p.V506A 0.09 tolerated(0.86) possibly_damaging(0.844) TCGA-VQ-A8PB-01 19 52705232 52705232 C T PPP2R1A Silent p.I38I 0.20 TCGA-VQ-A8PB-01 19 53958710 53958710 A G ZNF761 RNA 0.24 TCGA-VQ-A8PB-01 19 54179002 54179002 T A MIR520E RNA 0.32 TCGA-VQ-A8PB-01 19 54822806 54822806 G A LILRA5 Missense_Mutation p.A197V 0.29 deleterious(0.01) probably_damaging(0.992) TCGA-VQ-A8PB-01 19 55451568 55451568 C T NLRP7 Missense_Mutation p.A207T 0.37 deleterious(0.04) possibly_damaging(0.899) TCGA-VQ-A8PB-01 19 55677706 55677706 G A DNAAF3 Nonsense_Mutation p.Q73* 0.31 TCGA-VQ-A8PB-01 19 57133787 57133787 G A ZNF71 Missense_Mutation p.G378S 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A8PB-01 19 57175506 57175506 C T ZNF835 Missense_Mutation p.R354H 0.26 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8PB-01 19 57723860 57723860 C T ZNF264 Silent p.S465S 0.35 TCGA-VQ-A8PB-01 19 5824144 5824144 T C NRTN 5'UTR 0.17 TCGA-VQ-A8PB-01 19 58438372 58438372 T C ZNF418 Missense_Mutation p.T393A 0.23 deleterious(0.02) benign(0.251) TCGA-VQ-A8PB-01 19 58982641 58982641 C T ZNF324 Missense_Mutation p.A261V 0.25 deleterious(0.04) probably_damaging(0.997) TCGA-VQ-A8PB-01 19 5923224 5923224 G A RANBP3 Missense_Mutation p.A397V 0.39 deleterious(0) probably_damaging(0.965) TCGA-VQ-A8PB-01 19 6692960 6692960 G A C3 Missense_Mutation p.A1122V 0.27 deleterious(0) benign(0.138) TCGA-VQ-A8PB-01 19 9085193 9085193 C A MUC16 Missense_Mutation p.G2208W 0.35 unknown(0) TCGA-VQ-A8PB-01 19 9922207 9922207 T C FBXL12 Missense_Mutation p.M116V 0.36 tolerated(0.5) benign(0) TCGA-VQ-A8PB-01 1 100380997 100380997 A - AGL Frame_Shift_Del p.K1407Nfs*8 0.22 TCGA-VQ-A8PB-01 1 100534122 100534122 T - HIAT1 Frame_Shift_Del p.L269Yfs*6 0.27 TCGA-VQ-A8PB-01 1 100614197 100614198 - A TRMT13 Frame_Shift_Ins p.K425Efs*8 0.24 TCGA-VQ-A8PB-01 1 1019298 1019298 G A C1orf159 Intron 0.30 TCGA-VQ-A8PB-01 1 103548517 103548517 C T COL11A1 Missense_Mutation p.D40N 0.34 probably_damaging(1) TCGA-VQ-A8PB-01 1 109560141 109560141 T - WDR47 Frame_Shift_Del p.R81Gfs*7 0.18 TCGA-VQ-A8PB-01 1 109649674 109649676 TTG - C1orf194 In_Frame_Del p.N77del 0.22 TCGA-VQ-A8PB-01 1 1120365 1120365 G A TTLL10 Missense_Mutation p.S426N 0.20 tolerated(0.69) benign(0.107) TCGA-VQ-A8PB-01 1 1120422 1120422 G A TTLL10 Missense_Mutation p.R445H 0.30 tolerated(0.06) benign(0.211) TCGA-VQ-A8PB-01 1 112298296 112298296 C A DDX20 5'UTR 0.21 TCGA-VQ-A8PB-01 1 11345908 11345908 T G UBIAD1 Missense_Mutation p.V246G 0.06 deleterious(0) possibly_damaging(0.688) TCGA-VQ-A8PB-01 1 113616248 113616248 C - LRIG2 Frame_Shift_Del p.D76Tfs*27 0.28 TCGA-VQ-A8PB-01 1 114367792 114367792 A G PTPN22 Silent p.S751S 0.26 TCGA-VQ-A8PB-01 1 1153924 1153924 C T SDF4 Missense_Mutation p.D276N 0.19 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8PB-01 1 116287535 116287535 T C CASQ2 Splice_Site p.X79_splice 0.31 TCGA-VQ-A8PB-01 1 120165879 120165879 C T ZNF697 Missense_Mutation p.V363M 0.31 tolerated(0.19) benign(0.047) TCGA-VQ-A8PB-01 1 145487436 145487436 T C LIX1L Missense_Mutation p.L142P 0.20 deleterious(0) probably_damaging(0.991) TCGA-VQ-A8PB-01 1 145555789 145555789 G A ANKRD35 Missense_Mutation p.R46Q 0.37 tolerated(0.14) possibly_damaging(0.553) TCGA-VQ-A8PB-01 1 149885019 149885019 C - SV2A Frame_Shift_Del p.G125Afs*2 0.33 TCGA-VQ-A8PB-01 1 150482593 150482593 C A ECM1 Missense_Mutation p.P134H 0.27 deleterious(0.01) possibly_damaging(0.678) TCGA-VQ-A8PB-01 1 150974945 150974945 C T FAM63A Missense_Mutation p.R98Q 0.30 tolerated_low_confidence(0.92) benign(0.001) TCGA-VQ-A8PB-01 1 151021183 151021183 C - C1orf56 Frame_Shift_Del p.F289Sfs*48 0.28 TCGA-VQ-A8PB-01 1 151280100 151280100 C T PI4KB Missense_Mutation p.V390M 0.36 deleterious(0) probably_damaging(0.939) TCGA-VQ-A8PB-01 1 154296202 154296202 C T AQP10 Silent p.C209C 0.13 TCGA-VQ-A8PB-01 1 154574902 154574902 C T ADAR Silent p.R72R 0.26 TCGA-VQ-A8PB-01 1 154961180 154961180 G T FLAD1 Missense_Mutation p.K324N 0.19 deleterious(0) possibly_damaging(0.873) TCGA-VQ-A8PB-01 1 155154503 155154503 C A TRIM46 Silent p.T588T 0.40 TCGA-VQ-A8PB-01 1 155319183 155319183 T C ASH1L Missense_Mutation p.T2497A 0.24 deleterious_low_confidence(0.01) benign(0.014) TCGA-VQ-A8PB-01 1 155823199 155823199 C T GON4L Missense_Mutation p.A125T 0.23 tolerated_low_confidence(0.07) benign(0.003) TCGA-VQ-A8PB-01 1 156255497 156255498 - C TMEM79 Frame_Shift_Ins p.R163Pfs*9 0.25 TCGA-VQ-A8PB-01 1 156510703 156510703 C T IQGAP3 Missense_Mutation p.A846T 0.23 tolerated(0.08) benign(0.002) TCGA-VQ-A8PB-01 1 156594441 156594441 G A HAPLN2 Missense_Mutation p.G202D 0.28 deleterious(0) probably_damaging(1) TCGA-VQ-A8PB-01 1 160012049 160012049 C T KCNJ10 Missense_Mutation p.A92T 0.30 tolerated(0.51) benign(0.102) TCGA-VQ-A8PB-01 1 160167359 160167359 A T CASQ1 Missense_Mutation p.R261S 0.18 deleterious(0.01) possibly_damaging(0.858) TCGA-VQ-A8PB-01 1 161695778 161695778 C T FCRLB Missense_Mutation p.R159C 0.43 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8PB-01 1 162336894 162336894 C T RP11-565P22.6 Silent p.P72P 0.26 TCGA-VQ-A8PB-01 1 16456884 16456884 G A EPHA2 Missense_Mutation p.L836F 0.26 deleterious(0) probably_damaging(0.962) TCGA-VQ-A8PB-01 1 16582216 16582216 A G FBXO42 Missense_Mutation p.S253P 0.26 tolerated(0.15) benign(0.01) TCGA-VQ-A8PB-01 1 169560677 169560678 - G SELP Frame_Shift_Ins p.N810Efs*18 0.18 TCGA-VQ-A8PB-01 1 169696561 169696561 G A SELE Missense_Mutation p.T525M 0.47 tolerated(0.17) benign(0.149) TCGA-VQ-A8PB-01 1 171544112 171544112 A - PRRC2C Frame_Shift_Del p.K2266Rfs*5 0.24 TCGA-VQ-A8PB-01 1 172411270 172411271 - A PIGC Frame_Shift_Ins p.D165* 0.27 TCGA-VQ-A8PB-01 1 173567077 173567077 A G SLC9C2 Missense_Mutation p.V108A 0.33 deleterious(0.01) probably_damaging(0.913) TCGA-VQ-A8PB-01 1 181695296 181695296 C T CACNA1E Silent p.I746I 0.31 TCGA-VQ-A8PB-01 1 183849757 183849757 G A RGL1 Missense_Mutation p.A180T 0.35 tolerated(0.1) benign(0.358) TCGA-VQ-A8PB-01 1 1849306 1849306 G A TMEM52 3'UTR 0.22 TCGA-VQ-A8PB-01 1 186277652 186277652 C T PRG4 Missense_Mutation p.A934V 0.28 unknown(0) TCGA-VQ-A8PB-01 1 18704817 18704817 G A IGSF21 Silent p.T467T 0.39 TCGA-VQ-A8PB-01 1 19610559 19610559 C T AKR7A3 Silent p.A255A 0.25 TCGA-VQ-A8PB-01 1 197073342 197073342 T - ASPM Frame_Shift_Del p.N1680Mfs*4 0.24 TCGA-VQ-A8PB-01 1 197169110 197169110 A - ZBTB41 Frame_Shift_Del p.L165Wfs*4 0.20 TCGA-VQ-A8PB-01 1 20067354 20067354 C T TMCO4 Missense_Mutation p.E320K 0.29 deleterious(0.03) possibly_damaging(0.673) TCGA-VQ-A8PB-01 1 202887392 202887392 G A KLHL12 Silent p.S158S 0.22 TCGA-VQ-A8PB-01 1 204393999 204393999 C T PIK3C2B Missense_Mutation p.R1629Q 0.38 tolerated_low_confidence(0.07) possibly_damaging(0.597) TCGA-VQ-A8PB-01 1 204923330 204923330 G A NFASC Missense_Mutation p.R77Q 0.33 deleterious(0) possibly_damaging(0.625) TCGA-VQ-A8PB-01 1 206652377 206652377 G A IKBKE Missense_Mutation p.E362K 0.35 deleterious(0.02) benign(0.028) TCGA-VQ-A8PB-01 1 207642044 207642044 C - CR2 Frame_Shift_Del p.T209Hfs*10 0.25 TCGA-VQ-A8PB-01 1 20975680 20975680 G A PINK1 Missense_Mutation p.V482M 0.27 tolerated(0.1) benign(0.378) TCGA-VQ-A8PB-01 1 210857061 210857061 G A KCNH1 Silent p.C844C 0.31 TCGA-VQ-A8PB-01 1 211192167 211192167 A - KCNH1 Frame_Shift_Del p.F330Lfs*24 0.18 TCGA-VQ-A8PB-01 1 213125020 213125020 G A VASH2 Missense_Mutation p.G46R 0.31 deleterious(0.02) benign(0.023) TCGA-VQ-A8PB-01 1 214170327 214170327 G T PROX1 Missense_Mutation p.S150I 0.29 tolerated(0.07) possibly_damaging(0.609) TCGA-VQ-A8PB-01 1 220174574 220174574 G A EPRS Missense_Mutation p.P696L 0.26 deleterious(0) probably_damaging(0.992) TCGA-VQ-A8PB-01 1 22032244 22032244 G A USP48 Missense_Mutation p.S787F 0.22 deleterious(0.01) benign(0.284) TCGA-VQ-A8PB-01 1 22178363 22178363 G A HSPG2 Silent p.Y2309Y 0.33 TCGA-VQ-A8PB-01 1 223947025 223947025 C T CAPN2 Silent p.R457R 0.42 TCGA-VQ-A8PB-01 1 225598037 225598037 T C LBR Missense_Mutation p.N424D 0.28 deleterious(0.01) possibly_damaging(0.901) TCGA-VQ-A8PB-01 1 228465539 228465539 G A OBSCN Missense_Mutation p.R2709Q 0.31 benign(0.226) TCGA-VQ-A8PB-01 1 229666123 229666123 C T ABCB10 Missense_Mutation p.G490S 0.28 deleterious(0.01) probably_damaging(0.992) TCGA-VQ-A8PB-01 1 231061337 231061337 C T TTC13 Missense_Mutation p.C505Y 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A8PB-01 1 231132904 231132904 C T ARV1 Silent p.A237A 0.24 TCGA-VQ-A8PB-01 1 231344839 231344839 C T TRIM67 Missense_Mutation p.H656Y 0.21 tolerated(0.67) possibly_damaging(0.449) TCGA-VQ-A8PB-01 1 233497990 233497990 G T MLK4 Missense_Mutation p.K501N 0.25 deleterious(0) possibly_damaging(0.756) TCGA-VQ-A8PB-01 1 237895362 237895362 C T RYR2 Missense_Mutation p.P3651L 0.34 benign(0.003) TCGA-VQ-A8PB-01 1 24078022 24078024 GAA - TCEB3 In_Frame_Del p.K338del 0.25 TCGA-VQ-A8PB-01 1 2418349 2418349 G T PLCH2 Missense_Mutation p.A247S 0.33 tolerated(0.37) benign(0.002) TCGA-VQ-A8PB-01 1 245006587 245006587 T - COX20 3'UTR 0.26 TCGA-VQ-A8PB-01 1 247978228 247978228 A G OR14A16 Silent p.D268D 0.15 TCGA-VQ-A8PB-01 1 26526469 26526469 G A CATSPER4 Missense_Mutation p.V303I 0.30 tolerated(0.11) possibly_damaging(0.451) TCGA-VQ-A8PB-01 1 27105931 27105931 G - ARID1A Frame_Shift_Del p.D1850Tfs*33 0.30 TCGA-VQ-A8PB-01 1 27332660 27332660 G A FAM46B Silent p.N351N 0.30 TCGA-VQ-A8PB-01 1 32689721 32689721 C T EIF3I Silent p.D61D 0.30 TCGA-VQ-A8PB-01 1 33236500 33236500 C A KIAA1522 Missense_Mutation p.P574T 0.33 tolerated(0.4) unknown(0) TCGA-VQ-A8PB-01 1 34090664 34090664 C T CSMD2 Silent p.A1789A 0.23 TCGA-VQ-A8PB-01 1 35260512 35260512 G A GJA4 Missense_Mutation p.C233Y 0.34 tolerated(0.19) benign(0.001) TCGA-VQ-A8PB-01 1 35365852 35365852 C - DLGAP3 Frame_Shift_Del p.G377Vfs*91 0.31 TCGA-VQ-A8PB-01 1 38185609 38185609 C T EPHA10 Missense_Mutation p.R845Q 0.43 deleterious(0.01) probably_damaging(0.996) TCGA-VQ-A8PB-01 1 38261375 38261375 G A MANEAL Intron 0.26 TCGA-VQ-A8PB-01 1 38397692 38397692 A G INPP5B Missense_Mutation p.L142P 0.17 tolerated(0.28) benign(0.431) TCGA-VQ-A8PB-01 1 39341053 39341054 TT - GJA9 Frame_Shift_Del p.G241Afs*12 0.23 TCGA-VQ-A8PB-01 1 39776067 39776067 C T MACF1 Missense_Mutation p.R1028C 0.25 possibly_damaging(0.59) TCGA-VQ-A8PB-01 1 40702571 40702571 G A RLF Missense_Mutation p.E733K 0.24 tolerated(0.67) benign(0.31) TCGA-VQ-A8PB-01 1 43200845 43200845 C T CLDN19 Intron 0.39 TCGA-VQ-A8PB-01 1 43915841 43915841 C T SZT2 Missense_Mutation p.T3328M 0.25 deleterious(0.03) probably_damaging(0.999) TCGA-VQ-A8PB-01 1 45120574 45120574 C T TMEM53 Missense_Mutation p.R164H 0.30 tolerated(0.29) benign(0.001) TCGA-VQ-A8PB-01 1 45475699 45475699 C T HECTD3 Missense_Mutation p.V240M 0.24 deleterious(0.01) probably_damaging(0.931) TCGA-VQ-A8PB-01 1 45974582 45974583 TG - MMACHC Frame_Shift_Del p.V183Tfs*5 0.32 TCGA-VQ-A8PB-01 1 46733194 46733194 C T RAD54L Missense_Mutation p.R319W 0.35 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PB-01 1 50884516 50884516 C T DMRTA2 Missense_Mutation p.A484T 0.25 tolerated(0.33) unknown(0) TCGA-VQ-A8PB-01 1 52838867 52838867 G A ORC1 Silent p.L858L 0.28 TCGA-VQ-A8PB-01 1 62367102 62367102 G A INADL Missense_Mutation p.A1118T 0.27 tolerated(0.17) probably_damaging(0.998) TCGA-VQ-A8PB-01 1 6257785 6257785 T - RPL22 Frame_Shift_Del p.K15Rfs*5 0.34 TCGA-VQ-A8PB-01 1 62593749 62593749 C T INADL Missense_Mutation p.R1717W 0.39 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PB-01 1 64095113 64095113 C T PGM1 Silent p.I106I 0.07 TCGA-VQ-A8PB-01 1 65306997 65306997 T - JAK1 Frame_Shift_Del p.K860Nfs*16 0.27 TCGA-VQ-A8PB-01 1 74905214 74905214 C G TNNI3K Missense_Mutation p.T741S 0.31 tolerated(0.55) benign(0.042) TCGA-VQ-A8PB-01 1 75139310 75139310 C T C1orf173 5'UTR 0.38 TCGA-VQ-A8PB-01 1 78189100 78189100 T - USP33 Frame_Shift_Del p.K466Nfs*25 0.31 TCGA-VQ-A8PB-01 1 7839806 7839806 T - VAMP3 3'UTR 0.57 TCGA-VQ-A8PB-01 1 7998254 7998254 T - TNFRSF9 Frame_Shift_Del p.G116Vfs*33 0.29 TCGA-VQ-A8PB-01 1 84956031 84956031 C T RPF1 Silent p.S164S 0.28 TCGA-VQ-A8PB-01 1 90472925 90472925 C T ZNF326 Silent p.Y77Y 0.30 TCGA-VQ-A8PB-01 1 91727873 91727873 T - HFM1 Frame_Shift_Del p.N1388Tfs*37 0.26 TCGA-VQ-A8PB-01 1 93602611 93602611 G A MTF2 3'UTR 0.31 TCGA-VQ-A8PB-01 1 93826186 93826186 A G DR1 Missense_Mutation p.D174G 0.27 deleterious_low_confidence(0.01) unknown(0) TCGA-VQ-A8PB-01 1 94586667 94586667 C T ABCA4 5'UTR 0.36 TCGA-VQ-A8PB-01 20 1638349 1638349 T G SIRPG Silent p.P4P 0.24 TCGA-VQ-A8PB-01 20 17581680 17581680 T - DSTN Frame_Shift_Del p.L103Cfs*6 0.33 TCGA-VQ-A8PB-01 20 18395989 18395989 G A DZANK1 Silent p.C353C 0.24 TCGA-VQ-A8PB-01 20 20144790 20144790 G A C20orf26 Missense_Mutation p.V375I 0.22 tolerated(0.21) benign(0) TCGA-VQ-A8PB-01 20 20505137 20505137 G A RALGAPA2 Silent p.P1271P 0.19 TCGA-VQ-A8PB-01 20 21492819 21492819 G A NKX2-2 Silent p.A188A 0.20 TCGA-VQ-A8PB-01 20 21687610 21687610 C T PAX1 Missense_Mutation p.P274L 0.18 deleterious(0.03) benign(0.145) TCGA-VQ-A8PB-01 20 23065686 23065686 C - CD93 Frame_Shift_Del p.A382Pfs*206 0.11 TCGA-VQ-A8PB-01 20 25273157 25273157 C T PYGB Silent p.G695G 0.16 TCGA-VQ-A8PB-01 20 3210080 3210080 G A SLC4A11 Silent p.C630C 0.31 TCGA-VQ-A8PB-01 20 32663711 32663711 G A RALY Missense_Mutation p.V137M 0.33 tolerated(0.18) probably_damaging(0.962) TCGA-VQ-A8PB-01 20 34145326 34145326 C - ERGIC3 3'UTR 0.21 TCGA-VQ-A8PB-01 20 34775609 34775609 C T EPB41L1 Missense_Mutation p.P266L 0.38 deleterious(0.01) probably_damaging(0.965) TCGA-VQ-A8PB-01 20 3673732 3673732 G A SIGLEC1 Silent p.G1185G 0.43 TCGA-VQ-A8PB-01 20 43929746 43929746 A C MATN4 Missense_Mutation p.C295W 0.17 probably_damaging(0.999) TCGA-VQ-A8PB-01 20 44439791 44439791 C T DNTTIP1 Missense_Mutation p.T316I 0.13 deleterious(0.01) possibly_damaging(0.509) TCGA-VQ-A8PB-01 20 44980780 44980780 G A SLC35C2 Silent p.G249G 0.18 TCGA-VQ-A8PB-01 20 45891030 45891030 A G ZMYND8 Splice_Site p.X541_splice 0.31 TCGA-VQ-A8PB-01 20 468157 468157 T C CSNK2A1 Missense_Mutation p.E296G 0.23 deleterious(0) probably_damaging(0.972) TCGA-VQ-A8PB-01 20 47582545 47582545 G A ARFGEF2 Silent p.S348S 0.26 TCGA-VQ-A8PB-01 20 47712925 47712925 C A CSE1L Missense_Mutation p.L956I 0.20 tolerated(0.19) benign(0.14) TCGA-VQ-A8PB-01 20 50048921 50048921 G A NFATC2 Missense_Mutation p.P802L 0.26 deleterious(0.02) benign(0.009) TCGA-VQ-A8PB-01 20 50312666 50312666 G A ATP9A Silent p.A171A 0.30 TCGA-VQ-A8PB-01 20 55748286 55748286 G A BMP7 Silent p.N372N 0.26 TCGA-VQ-A8PB-01 20 56179527 56179527 G A ZBP1 3'UTR 0.29 TCGA-VQ-A8PB-01 20 57269604 57269604 C A NPEPL1 Missense_Mutation p.L155M 0.32 deleterious(0.04) benign(0.071) TCGA-VQ-A8PB-01 20 61340715 61340715 C T NTSR1 Silent p.S52S 0.28 TCGA-VQ-A8PB-01 20 9374282 9374282 A G PLCB4 Silent p.K457K 0.18 TCGA-VQ-A8PB-01 21 14417570 14417570 A T RNU6-614P 5'Flank 0.14 TCGA-VQ-A8PB-01 21 16338330 16338330 T - NRIP1 Frame_Shift_Del p.E729Rfs*5 0.29 TCGA-VQ-A8PB-01 21 30434709 30434709 G A CCT8 Missense_Mutation p.H346Y 0.25 tolerated(1) benign(0.004) TCGA-VQ-A8PB-01 21 31709538 31709538 T - KRTAP27-1 Frame_Shift_Del p.N150Ifs*62 0.24 TCGA-VQ-A8PB-01 21 31973499 31973499 C T KRTAP22-1 Silent p.C20C 0.29 TCGA-VQ-A8PB-01 21 34922128 34922128 A G SON Silent p.S197S 0.34 TCGA-VQ-A8PB-01 21 40558989 40558989 A - BRWD1 Frame_Shift_Del p.L2309* 0.18 TCGA-VQ-A8PB-01 21 43547789 43547789 G A UMODL1 Missense_Mutation p.V1308M 0.33 deleterious(0) probably_damaging(0.976) TCGA-VQ-A8PB-01 21 43716287 43716287 G - ABCG1 Frame_Shift_Del p.V609Sfs*8 0.28 TCGA-VQ-A8PB-01 21 45710773 45710773 G - AIRE Intron 0.21 TCGA-VQ-A8PB-01 21 45710892 45710892 G - AIRE Intron 0.22 TCGA-VQ-A8PB-01 21 45752999 45752999 T C C21orf2 Missense_Mutation p.N97S 0.22 deleterious(0) probably_damaging(0.97) TCGA-VQ-A8PB-01 21 45819208 45819208 G A TRPM2 Missense_Mutation p.E698K 0.34 deleterious(0.01) probably_damaging(0.97) TCGA-VQ-A8PB-01 21 46624592 46624592 G A ADARB1 Missense_Mutation p.R603Q 0.26 deleterious(0) probably_damaging(0.971) TCGA-VQ-A8PB-01 21 46875750 46875750 G A COL18A1 Silent p.A102A 0.28 TCGA-VQ-A8PB-01 21 47421199 47421199 G A COL6A1 Missense_Mutation p.V619M 0.29 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PB-01 22 19868186 19868186 G A TXNRD2 Missense_Mutation p.R381W 0.26 deleterious(0) probably_damaging(1) TCGA-VQ-A8PB-01 22 21344765 21344765 G A LZTR1 Missense_Mutation p.G248R 0.40 deleterious(0) probably_damaging(1) TCGA-VQ-A8PB-01 22 22724319 22724319 C T IGLV7-46 Missense_Mutation p.T72I 0.26 TCGA-VQ-A8PB-01 22 22730760 22730760 C T IGLV5-45 Silent p.S85S 0.20 TCGA-VQ-A8PB-01 22 26422434 26422434 C T MYO18B Missense_Mutation p.T2165I 0.20 deleterious(0.03) benign(0.004) TCGA-VQ-A8PB-01 22 26829563 26829563 C - ASPHD2 5'UTR 0.29 TCGA-VQ-A8PB-01 22 37709571 37709572 - G CYTH4 3'UTR 0.22 TCGA-VQ-A8PB-01 22 37769879 37769879 C T ELFN2 Missense_Mutation p.G566S 0.22 tolerated(0.16) benign(0.003) TCGA-VQ-A8PB-01 22 37770058 37770058 C T ELFN2 Missense_Mutation p.R506H 0.24 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PB-01 22 38273962 38273962 G A EIF3L Silent p.Q453Q 0.35 TCGA-VQ-A8PB-01 22 38823868 38823868 G A KCNJ4 Silent p.S90S 0.32 TCGA-VQ-A8PB-01 22 43831107 43831107 C T MPPED1 Silent p.S126S 0.14 TCGA-VQ-A8PB-01 22 45258341 45258341 C T PRR5-ARHGAP8 Missense_Mutation p.H600Y 0.19 tolerated_low_confidence(1) benign(0) TCGA-VQ-A8PB-01 22 50279819 50279819 A G ZBED4 Missense_Mutation p.S837G 0.19 tolerated(0.32) benign(0.003) TCGA-VQ-A8PB-01 22 50644849 50644849 G A SELO Missense_Mutation p.V220I 0.32 tolerated(0.2) possibly_damaging(0.683) TCGA-VQ-A8PB-01 22 50714208 50714208 G A AL022328.1 Missense_Mutation p.G36S 0.27 deleterious_low_confidence(0) unknown(0) TCGA-VQ-A8PB-01 22 50893447 50893447 A G SBF1 Missense_Mutation p.L1560P 0.27 tolerated(0.2) possibly_damaging(0.898) TCGA-VQ-A8PB-01 2 105858900 105858900 C T GPR45 Silent p.Y195Y 0.31 TCGA-VQ-A8PB-01 2 107423305 107423305 G A ST6GAL2 Silent p.Y473Y 0.30 TCGA-VQ-A8PB-01 2 109513673 109513673 G A EDAR Missense_Mutation p.T346M 0.25 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8PB-01 2 110373559 110373559 G - SOWAHC Frame_Shift_Del p.E500Rfs*18 0.30 TCGA-VQ-A8PB-01 2 113243505 113243505 G A TTL Missense_Mutation p.G57R 0.35 deleterious(0) probably_damaging(1) TCGA-VQ-A8PB-01 2 118866049 118866049 C T INSIG2 3'UTR 0.22 TCGA-VQ-A8PB-01 2 122165264 122165264 G A CLASP1 Missense_Mutation p.P818S 0.11 tolerated(1) benign(0.006) TCGA-VQ-A8PB-01 2 128396830 128396830 C T LIMS2 3'UTR 0.34 TCGA-VQ-A8PB-01 2 128747271 128747271 G - SAP130 Frame_Shift_Del p.I576Lfs*187 0.26 TCGA-VQ-A8PB-01 2 128750858 128750858 T A SAP130 Missense_Mutation p.Q486H 0.31 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-VQ-A8PB-01 2 130737745 130737745 G - RAB6C Frame_Shift_Del p.E21Sfs*9 0.14 TCGA-VQ-A8PB-01 2 130911331 130911331 G A SMPD4 Missense_Mutation p.R652W 0.08 deleterious(0.01) probably_damaging(0.93) TCGA-VQ-A8PB-01 2 133403292 133403292 G T LYPD1 3'UTR 0.47 TCGA-VQ-A8PB-01 2 140992404 140992404 G A LRP1B Missense_Mutation p.A4537V 0.35 benign(0.004) TCGA-VQ-A8PB-01 2 148683686 148683686 A - ACVR2A Frame_Shift_Del p.K437Rfs*5 0.53 TCGA-VQ-A8PB-01 2 163000636 163000636 T C GCG Missense_Mutation p.H146R 0.37 deleterious(0) probably_damaging(0.988) TCGA-VQ-A8PB-01 2 1652960 1652960 G - PXDN Frame_Shift_Del p.N865Mfs*25 0.19 TCGA-VQ-A8PB-01 2 169995879 169995879 C T LRP2 Missense_Mutation p.A4424T 0.30 benign(0.041) TCGA-VQ-A8PB-01 2 170665008 170665008 A - SSB Frame_Shift_Del p.N193Mfs*13 0.35 TCGA-VQ-A8PB-01 2 172691290 172691290 C T SLC25A12 Missense_Mutation p.R233H 0.14 deleterious(0.05) possibly_damaging(0.832) TCGA-VQ-A8PB-01 2 173457749 173457749 C T PDK1 Silent p.Y381Y 0.26 TCGA-VQ-A8PB-01 2 176995416 176995417 - C HOXD8 Frame_Shift_Ins p.P111Sfs*31 0.34 TCGA-VQ-A8PB-01 2 177054748 177054748 C T HOXD1 Nonsense_Mutation p.R289* 0.04 TCGA-VQ-A8PB-01 2 179432238 179432238 A G TTN Silent p.A26207A 0.25 TCGA-VQ-A8PB-01 2 179458758 179458758 G A TTN Silent p.S19454S 0.21 TCGA-VQ-A8PB-01 2 179569450 179569450 C T TTN Missense_Mutation p.A9917T 0.19 TCGA-VQ-A8PB-01 2 179610178 179610178 C A TTN Intron 0.44 TCGA-VQ-A8PB-01 2 190532551 190532551 G T ASNSD1 Missense_Mutation p.R509L 0.33 tolerated(0.13) benign(0.396) TCGA-VQ-A8PB-01 2 190719322 190719322 A C PMS1 Missense_Mutation p.S442R 0.26 tolerated(0.22) benign(0.002) TCGA-VQ-A8PB-01 2 200789807 200789807 G A C2orf69 Missense_Mutation p.R119H 0.22 tolerated(0.56) benign(0.004) TCGA-VQ-A8PB-01 2 203071929 203071929 A T SUMO1 3'UTR 0.29 TCGA-VQ-A8PB-01 2 204066421 204066421 A G NBEAL1 Missense_Mutation p.H2436R 0.32 tolerated(0.56) benign(0.219) TCGA-VQ-A8PB-01 2 206630233 206630233 C T NRP2 Silent p.S781S 0.28 TCGA-VQ-A8PB-01 2 215843156 215843156 T - ABCA12 Frame_Shift_Del p.N1671Ifs*4 0.21 TCGA-VQ-A8PB-01 2 219922335 219922335 A G IHH Missense_Mutation p.W133R 0.20 deleterious(0) probably_damaging(1) TCGA-VQ-A8PB-01 2 220081550 220081550 C T ABCB6 Missense_Mutation p.R231Q 0.40 tolerated(0.71) benign(0.001) TCGA-VQ-A8PB-01 2 220349056 220349056 G A SPEG Missense_Mutation p.E2291K 0.38 benign(0.036) TCGA-VQ-A8PB-01 2 225698868 225698868 T C DOCK10 Missense_Mutation p.K988R 0.29 tolerated(0.1) benign(0.201) TCGA-VQ-A8PB-01 2 227661896 227661896 C T IRS1 Missense_Mutation p.R520Q 0.34 tolerated(0.07) possibly_damaging(0.859) TCGA-VQ-A8PB-01 2 230675658 230675658 A G TRIP12 Missense_Mutation p.V672A 0.30 deleterious(0) possibly_damaging(0.519) TCGA-VQ-A8PB-01 2 231931679 231931680 - A PSMD1 Frame_Shift_Ins p.P125Tfs*3 0.26 TCGA-VQ-A8PB-01 2 234526857 234526857 C T UGT1A8 Silent p.F168F 0.23 TCGA-VQ-A8PB-01 2 238672007 238672007 G A LRRFIP1 Missense_Mutation p.D551N 0.24 tolerated(0.72) benign(0) TCGA-VQ-A8PB-01 2 239000008 239000008 G A SCLY Intron 0.17 TCGA-VQ-A8PB-01 2 239082275 239082275 C T ILKAP Missense_Mutation p.V286M 0.16 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8PB-01 2 239147648 239147648 G A HES6 Silent p.G165G 0.29 TCGA-VQ-A8PB-01 2 24011443 24011443 T - ATAD2B Frame_Shift_Del p.K905Nfs*6 0.23 TCGA-VQ-A8PB-01 2 242080078 242080078 G A PASK Missense_Mutation p.T96M 0.26 deleterious(0.03) benign(0.01) TCGA-VQ-A8PB-01 2 25053651 25053651 C T ADCY3 Missense_Mutation p.R700Q 0.35 deleterious(0.05) benign(0.002) TCGA-VQ-A8PB-01 2 25469091 25469091 T - DNMT3A Frame_Shift_Del p.K456Sfs*195 0.18 TCGA-VQ-A8PB-01 2 25650474 25650474 C T DTNB Missense_Mutation p.R495K 0.16 tolerated(0.19) probably_damaging(0.984) TCGA-VQ-A8PB-01 2 25966231 25966231 G A ASXL2 Missense_Mutation p.A992V 0.30 tolerated(0.19) benign(0.008) TCGA-VQ-A8PB-01 2 27324316 27324316 G C CGREF1 Silent p.G261G 0.16 TCGA-VQ-A8PB-01 2 27324367 27324367 G C CGREF1 Silent p.G244G 0.19 TCGA-VQ-A8PB-01 2 27423973 27423973 G A SLC5A6 Nonsense_Mutation p.R553* 0.32 TCGA-VQ-A8PB-01 2 27427665 27427665 G A SLC5A6 Missense_Mutation p.A290V 0.30 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PB-01 2 27466090 27466090 C G CAD Missense_Mutation p.P2169A 0.23 tolerated(0.15) benign(0.381) TCGA-VQ-A8PB-01 2 32626311 32626311 T C BIRC6 Missense_Mutation p.L372P 0.30 probably_damaging(0.997) TCGA-VQ-A8PB-01 2 3469381 3469381 C T TRAPPC12 Missense_Mutation p.A564V 0.21 deleterious(0) probably_damaging(0.993) TCGA-VQ-A8PB-01 2 43986136 43986136 C T PLEKHH2 Missense_Mutation p.P1347S 0.28 tolerated(0.12) benign(0.177) TCGA-VQ-A8PB-01 2 48848326 48848326 G T STON1-GTF2A1L Missense_Mutation p.L752F 0.27 deleterious(0) probably_damaging(1) TCGA-VQ-A8PB-01 2 54093345 54093345 T - PSME4 Frame_Shift_Del p.T1805Pfs*69 0.31 TCGA-VQ-A8PB-01 2 54876810 54876810 G A SPTBN1 Missense_Mutation p.R1754H 0.28 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8PB-01 2 61297574 61297574 T A KIAA1841 Missense_Mutation p.I30N 0.32 deleterious(0) benign(0.276) TCGA-VQ-A8PB-01 2 61441637 61441637 T C USP34 Missense_Mutation p.H2747R 0.24 deleterious(0) probably_damaging(0.953) TCGA-VQ-A8PB-01 2 70188284 70188284 G - ASPRV1 Frame_Shift_Del p.S180Afs*28 0.25 TCGA-VQ-A8PB-01 2 7137073 7137073 T C RNF144A Missense_Mutation p.Y6H 0.26 tolerated_low_confidence(0.53) benign(0.255) TCGA-VQ-A8PB-01 2 71576892 71576892 C T ZNF638 Missense_Mutation p.R270C 0.28 deleterious(0.01) possibly_damaging(0.858) TCGA-VQ-A8PB-01 2 71778262 71778262 C A DYSF Silent p.P556P 0.22 TCGA-VQ-A8PB-01 2 71816726 71816726 G T DYSF Missense_Mutation p.G1136C 0.29 deleterious(0.02) probably_damaging(0.978) TCGA-VQ-A8PB-01 2 74275152 74275152 C T TET3 Missense_Mutation p.A568V 0.29 tolerated(1) benign(0.005) TCGA-VQ-A8PB-01 2 74656997 74656997 C - RTKN Frame_Shift_Del p.G238Vfs*70 0.17 TCGA-VQ-A8PB-01 2 74902347 74902347 G A SEMA4F Missense_Mutation p.R403H 0.26 deleterious(0.02) benign(0.344) TCGA-VQ-A8PB-01 2 80085155 80085155 C T CTNNA2 Silent p.I105I 0.26 TCGA-VQ-A8PB-01 2 88387472 88387472 G A SMYD1 Missense_Mutation p.V136M 0.27 deleterious(0) benign(0.355) TCGA-VQ-A8PB-01 2 95944813 95944813 C T PROM2 Missense_Mutation p.R399C 0.34 tolerated(0.05) probably_damaging(0.912) TCGA-VQ-A8PB-01 2 96993601 96993601 G A ITPRIPL1 Missense_Mutation p.R419H 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-VQ-A8PB-01 2 97377619 97377619 G A LMAN2L Silent p.Y228Y 0.39 TCGA-VQ-A8PB-01 2 97751571 97751571 C T FAHD2B Missense_Mutation p.G184S 0.38 deleterious(0) probably_damaging(1) TCGA-VQ-A8PB-01 2 99443563 99443563 C T KIAA1211L Missense_Mutation p.A204T 0.30 deleterious(0.01) possibly_damaging(0.682) TCGA-VQ-A8PB-01 3 101484459 101484459 T - CEP97 3'UTR 0.26 TCGA-VQ-A8PB-01 3 105260570 105260570 A - ALCAM Frame_Shift_Del p.S320Afs*2 0.20 TCGA-VQ-A8PB-01 3 107492023 107492023 C T BBX Silent p.S485S 0.25 TCGA-VQ-A8PB-01 3 123051467 123051467 G - ADCY5 Frame_Shift_Del p.Q488Rfs*5 0.16 TCGA-VQ-A8PB-01 3 123356984 123356984 A G MYLK Missense_Mutation p.V1632A 0.23 deleterious(0.02) possibly_damaging(0.648) TCGA-VQ-A8PB-01 3 127778996 127778996 G T SEC61A1 Missense_Mutation p.G135V 0.21 deleterious(0) probably_damaging(1) TCGA-VQ-A8PB-01 3 129275129 129275129 G A PLXND1 3'UTR 0.31 TCGA-VQ-A8PB-01 3 147128132 147128132 G A ZIC1 Missense_Mutation p.G78D 0.26 deleterious(0.03) probably_damaging(0.985) TCGA-VQ-A8PB-01 3 154032978 154032978 T - DHX36 Frame_Shift_Del p.M154Cfs*27 0.32 TCGA-VQ-A8PB-01 3 15720868 15720868 G A ANKRD28 Missense_Mutation p.A804V 0.05 deleterious(0) possibly_damaging(0.517) TCGA-VQ-A8PB-01 3 172165376 172165376 G A GHSR Intron 0.27 TCGA-VQ-A8PB-01 3 172835514 172835514 G A SPATA16 Missense_Mutation p.A3V 0.34 deleterious_low_confidence(0.04) possibly_damaging(0.682) TCGA-VQ-A8PB-01 3 178916725 178916725 C T PIK3CA Missense_Mutation p.R38C 0.25 deleterious(0) probably_damaging(1) TCGA-VQ-A8PB-01 3 183823105 183823105 G A HTR3E Missense_Mutation p.A230T 0.26 tolerated(1) benign(0.004) TCGA-VQ-A8PB-01 3 186760538 186760541 TCTT - ST6GAL1 Frame_Shift_Del p.L18Cfs*30 0.23 TCGA-VQ-A8PB-01 3 193855902 193855902 C T HES1 Silent p.S241S 0.27 TCGA-VQ-A8PB-01 3 195517061 195517061 G A MUC4 Missense_Mutation p.R464W 0.29 unknown(0) TCGA-VQ-A8PB-01 3 196669333 196669333 G A NCBP2 Silent p.Y14Y 0.47 TCGA-VQ-A8PB-01 3 20194018 20194018 T - KAT2B 3'UTR 0.25 TCGA-VQ-A8PB-01 3 25639679 25639679 A - TOP2B 3'UTR 0.35 TCGA-VQ-A8PB-01 3 27761732 27761732 C T EOMES Silent p.A322A 0.32 TCGA-VQ-A8PB-01 3 33623314 33623314 G A CLASP2 Silent p.L783L 0.36 TCGA-VQ-A8PB-01 3 38138133 38138133 G T DLEC1 Missense_Mutation p.G749C 0.26 deleterious(0) probably_damaging(1) TCGA-VQ-A8PB-01 3 38938526 38938526 G A SCN11A Missense_Mutation p.P738L 0.28 tolerated(0.6) benign(0.001) TCGA-VQ-A8PB-01 3 39453201 39453201 G A RPSA Missense_Mutation p.G187D 0.29 deleterious(0.04) probably_damaging(0.932) TCGA-VQ-A8PB-01 3 40231822 40231822 C T MYRIP Silent p.S511S 0.26 TCGA-VQ-A8PB-01 3 44670589 44670589 A C ZNF197 5'UTR 0.21 TCGA-VQ-A8PB-01 3 45837828 45837828 C T SLC6A20 Silent p.V28V 0.11 TCGA-VQ-A8PB-01 3 47041487 47041487 G A NBEAL2 Missense_Mutation p.G1300S 0.28 tolerated(0.47) benign(0) TCGA-VQ-A8PB-01 3 47043468 47043468 G A NBEAL2 Missense_Mutation p.R1614H 0.29 tolerated(0.06) benign(0.411) TCGA-VQ-A8PB-01 3 47618441 47618441 A G CSPG5 Missense_Mutation p.C359R 0.21 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PB-01 3 47889851 47889851 C T DHX30 Missense_Mutation p.A823V 0.21 tolerated(0.07) benign(0.079) TCGA-VQ-A8PB-01 3 48716818 48716818 G A NCKIPSD Missense_Mutation p.A521V 0.30 tolerated(0.15) benign(0.171) TCGA-VQ-A8PB-01 3 49294318 49294318 A - CCDC36 Frame_Shift_Del p.I464Sfs*63 0.21 TCGA-VQ-A8PB-01 3 49691010 49691010 C T BSN Missense_Mutation p.R1341C 0.25 unknown(0) TCGA-VQ-A8PB-01 3 49946734 49946734 T C MON1A Silent p.P590P 0.25 TCGA-VQ-A8PB-01 3 50137522 50137523 - C RBM5 Intron 0.33 TCGA-VQ-A8PB-01 3 50222881 50222881 G A SEMA3F Missense_Mutation p.G488R 0.25 deleterious(0) benign(0.344) TCGA-VQ-A8PB-01 3 51669611 51669611 C T RAD54L2 Missense_Mutation p.T382M 0.27 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8PB-01 3 58124212 58124212 C T FLNB Missense_Mutation p.R1720C 0.30 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8PB-01 3 58145365 58145365 A G FLNB Missense_Mutation p.S2356G 0.38 tolerated(0.57) possibly_damaging(0.796) TCGA-VQ-A8PB-01 3 62142766 62142766 C T PTPRG Silent p.F236F 0.28 TCGA-VQ-A8PB-01 3 62254743 62254743 A T PTPRG Missense_Mutation p.S970C 0.25 deleterious(0) possibly_damaging(0.63) TCGA-VQ-A8PB-01 3 64009127 64009127 C T PSMD6 5'UTR 0.44 TCGA-VQ-A8PB-01 3 69097032 69097032 G A TMF1 Missense_Mutation p.S275L 0.32 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-VQ-A8PB-01 3 7620356 7620356 C - GRM7 Frame_Shift_Del p.W590Gfs*3 0.18 TCGA-VQ-A8PB-01 3 96706437 96706437 G A EPHA6 Silent p.Q238Q 0.32 TCGA-VQ-A8PB-01 3 96962906 96962906 G A EPHA6 Missense_Mutation p.V461I 0.19 tolerated(0.57) benign(0.046) TCGA-VQ-A8PB-01 4 10080533 10080533 C T WDR1 Silent p.T459T 0.22 TCGA-VQ-A8PB-01 4 101111136 101111136 A G DDIT4L Missense_Mutation p.V2A 0.16 deleterious_low_confidence(0.01) probably_damaging(0.987) TCGA-VQ-A8PB-01 4 1018359 1018359 C T FGFRL1 Missense_Mutation p.R327C 0.17 deleterious(0) probably_damaging(0.967) TCGA-VQ-A8PB-01 4 1019074 1019074 A T FGFRL1 Missense_Mutation p.H485L 0.31 tolerated(0.22) probably_damaging(0.99) TCGA-VQ-A8PB-01 4 106848569 106848569 A - NPNT Frame_Shift_Del p.T85Pfs*36 0.30 TCGA-VQ-A8PB-01 4 106888399 106888399 G A NPNT Missense_Mutation p.R497H 0.34 tolerated(0.24) probably_damaging(0.999) TCGA-VQ-A8PB-01 4 109740448 109740448 C - COL25A1 Frame_Shift_Del p.G628Afs*40 0.14 TCGA-VQ-A8PB-01 4 11401403 11401403 A G HS3ST1 Missense_Mutation p.L76P 0.31 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PB-01 4 114824420 114824423 TGAA - ARSJ Frame_Shift_Del p.S270Hfs*18 0.27 TCGA-VQ-A8PB-01 4 119610622 119610622 G T METTL14 Intron 0.37 TCGA-VQ-A8PB-01 4 126336410 126336410 A G FAT4 Missense_Mutation p.S2098G 0.32 benign(0.074) TCGA-VQ-A8PB-01 4 13600741 13600741 A T BOD1L1 Missense_Mutation p.L2595M 0.27 possibly_damaging(0.547) TCGA-VQ-A8PB-01 4 151509210 151509211 - T LRBA Frame_Shift_Ins p.I2118Nfs*61 0.19 TCGA-VQ-A8PB-01 4 156784766 156784766 G A ASIC5 Missense_Mutation p.R61C 0.24 deleterious(0) probably_damaging(0.977) TCGA-VQ-A8PB-01 4 15780163 15780163 C T CD38 Silent p.V42V 0.04 TCGA-VQ-A8PB-01 4 158224914 158224914 A G GRIA2 Missense_Mutation p.K147R 0.08 tolerated(0.45) benign(0.016) TCGA-VQ-A8PB-01 4 166960567 166960567 G A TLL1 Missense_Mutation p.G412E 0.21 deleterious(0.02) probably_damaging(1) TCGA-VQ-A8PB-01 4 169317264 169317265 TT - DDX60L Frame_Shift_Del p.N1168Pfs*5 0.29 TCGA-VQ-A8PB-01 4 170641079 170641079 A - CLCN3 Frame_Shift_Del p.R824Dfs*21 0.25 TCGA-VQ-A8PB-01 4 1801089 1801089 T C FGFR3 Missense_Mutation p.V73A 0.45 tolerated(0.55) benign(0.008) TCGA-VQ-A8PB-01 4 183601724 183601724 C T TENM3 Silent p.N556N 0.29 TCGA-VQ-A8PB-01 4 186379493 186379493 C T CCDC110 Missense_Mutation p.V750I 0.32 tolerated(0.06) possibly_damaging(0.622) TCGA-VQ-A8PB-01 4 20255506 20255506 T A SLIT2 Missense_Mutation p.V23E 0.32 tolerated(0.34) benign(0.096) TCGA-VQ-A8PB-01 4 23833261 23833261 G A PPARGC1A Silent p.D116D 0.30 TCGA-VQ-A8PB-01 4 3133082 3133082 C T HTT Missense_Mutation p.R686C 0.23 probably_damaging(0.932) TCGA-VQ-A8PB-01 4 40892409 40892409 C T APBB2 Missense_Mutation p.V501M 0.21 deleterious(0) probably_damaging(0.978) TCGA-VQ-A8PB-01 4 41600977 41600977 G A LIMCH1 Missense_Mutation p.G93D 0.33 deleterious(0) probably_damaging(1) TCGA-VQ-A8PB-01 4 57861468 57861468 A - POLR2B Frame_Shift_Del p.K211Rfs*66 0.30 TCGA-VQ-A8PB-01 4 62453086 62453086 G A LPHN3 Missense_Mutation p.C66Y 0.20 deleterious(0) probably_damaging(1) TCGA-VQ-A8PB-01 4 62849251 62849251 T C LPHN3 Missense_Mutation p.Y988H 0.24 deleterious(0) probably_damaging(1) TCGA-VQ-A8PB-01 4 62936011 62936011 C A LPHN3 Silent p.S1265S 0.30 TCGA-VQ-A8PB-01 4 6302701 6302701 C T WFS1 Silent p.A393A 0.31 TCGA-VQ-A8PB-01 4 6865694 6865694 G T KIAA0232 Missense_Mutation p.Q1195H 0.29 deleterious(0.04) probably_damaging(0.999) TCGA-VQ-A8PB-01 4 71659507 71659507 G A RUFY3 Missense_Mutation p.R448H 0.29 tolerated(0.08) benign(0.024) TCGA-VQ-A8PB-01 4 81967644 81967644 A - BMP3 Frame_Shift_Del p.K358Rfs*20 0.29 TCGA-VQ-A8PB-01 4 8229446 8229446 C T SH3TC1 Silent p.H675H 0.32 TCGA-VQ-A8PB-01 4 84502950 84502950 C T AGPAT9 Silent p.G148G 0.26 TCGA-VQ-A8PB-01 4 87080508 87080508 A T MAPK10 Missense_Mutation p.V60D 0.33 deleterious(0) probably_damaging(0.994) TCGA-VQ-A8PB-01 4 95201839 95201839 C T SMARCAD1 Missense_Mutation p.H841Y 0.26 tolerated(0.87) benign(0.037) TCGA-VQ-A8PB-01 4 956367 956367 C T DGKQ Silent p.A690A 0.23 TCGA-VQ-A8PB-01 5 101709170 101709170 G A SLCO6A1 Silent p.I682I 0.27 TCGA-VQ-A8PB-01 5 102472454 102472454 C T PPIP5K2 Missense_Mutation p.A110V 0.27 deleterious(0.02) probably_damaging(0.963) TCGA-VQ-A8PB-01 5 112420928 112420928 C T MCC Missense_Mutation p.R493H 0.23 tolerated(0.13) probably_damaging(0.993) TCGA-VQ-A8PB-01 5 114878915 114878915 T G FEM1C Silent p.A92A 0.24 TCGA-VQ-A8PB-01 5 118183866 118183866 C T DTWD2 Silent p.Q215Q 0.22 TCGA-VQ-A8PB-01 5 1246145 1246145 G A SLC6A18 Silent p.T613T 0.39 TCGA-VQ-A8PB-01 5 129241121 129241121 C T CHSY3 Missense_Mutation p.P200L 0.42 deleterious(0.01) probably_damaging(0.992) TCGA-VQ-A8PB-01 5 132439995 132439995 A - HSPA4 Frame_Shift_Del p.N799Mfs*50 0.12 TCGA-VQ-A8PB-01 5 134332065 134332065 G A CATSPER3 Missense_Mutation p.V119M 0.21 tolerated(0.12) benign(0.315) TCGA-VQ-A8PB-01 5 137426957 137426957 C T WNT8A 3'UTR 0.12 TCGA-VQ-A8PB-01 5 13762961 13762961 G T DNAH5 Missense_Mutation p.P3384H 0.25 probably_damaging(0.971) TCGA-VQ-A8PB-01 5 137756630 137756630 G A KDM3B Silent p.P1317P 0.29 TCGA-VQ-A8PB-01 5 137803102 137803102 C T EGR1 Missense_Mutation p.R322C 0.22 deleterious(0) unknown(0) TCGA-VQ-A8PB-01 5 139938336 139938336 C T APBB3 Missense_Mutation p.R439H 0.24 tolerated(0.52) probably_damaging(0.999) TCGA-VQ-A8PB-01 5 140553065 140553065 G A PCDHB7 Missense_Mutation p.G217S 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.795) TCGA-VQ-A8PB-01 5 140683204 140683204 C T SLC25A2 Missense_Mutation p.E77K 0.23 deleterious(0) possibly_damaging(0.901) TCGA-VQ-A8PB-01 5 140724192 140724192 C T PCDHGA3 Missense_Mutation p.R198W 0.24 deleterious_low_confidence(0.01) benign(0.134) TCGA-VQ-A8PB-01 5 140725826 140725826 C T PCDHGA3 Silent p.G742G 0.27 TCGA-VQ-A8PB-01 5 140731556 140731556 G A PCDHGB1 Missense_Mutation p.A577T 0.23 deleterious(0.02) probably_damaging(0.93) TCGA-VQ-A8PB-01 5 140751417 140751417 C A PCDHGB3 Missense_Mutation p.L486I 0.04 deleterious(0.02) benign(0.158) TCGA-VQ-A8PB-01 5 141335924 141335924 C T PCDH12 Missense_Mutation p.R498H 0.36 tolerated(0.56) benign(0.007) TCGA-VQ-A8PB-01 5 141357939 141357939 G A RNF14 Nonsense_Mutation p.W126* 0.29 TCGA-VQ-A8PB-01 5 145649131 145649131 T C RBM27 Missense_Mutation p.V892A 0.42 tolerated(0.5) benign(0.009) TCGA-VQ-A8PB-01 5 147503525 147503525 T C SPINK5 Splice_Site p.X889_splice 0.33 TCGA-VQ-A8PB-01 5 150275528 150275528 T C ZNF300 Missense_Mutation p.I441V 0.27 tolerated(0.3) benign(0.014) TCGA-VQ-A8PB-01 5 153792500 153792500 G T GALNT10 Missense_Mutation p.G480C 0.25 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8PB-01 5 159686723 159686723 C T CCNJL Silent p.T160T 0.33 TCGA-VQ-A8PB-01 5 160067536 160067536 C T ATP10B Missense_Mutation p.R311Q 0.27 deleterious(0.03) possibly_damaging(0.474) TCGA-VQ-A8PB-01 5 167551887 167551887 G A TENM2 Missense_Mutation p.G681R 0.27 deleterious(0) probably_damaging(0.962) TCGA-VQ-A8PB-01 5 169483738 169483738 G A DOCK2 Missense_Mutation p.R1449H 0.23 tolerated(0.12) benign(0.042) TCGA-VQ-A8PB-01 5 170610182 170610183 - A RANBP17 Frame_Shift_Ins p.L629Tfs*17 0.29 TCGA-VQ-A8PB-01 5 176305026 176305026 C T UNC5A Silent p.A589A 0.24 TCGA-VQ-A8PB-01 5 177547584 177547584 C - N4BP3 Frame_Shift_Del p.Y248Tfs*50 0.29 TCGA-VQ-A8PB-01 5 178416347 178416347 C T GRM6 Missense_Mutation p.A358T 0.20 tolerated(0.16) benign(0.103) TCGA-VQ-A8PB-01 5 179036402 179036404 TCT - RUFY1 In_Frame_Del p.F671del 0.17 TCGA-VQ-A8PB-01 5 179294810 179294810 G A TBC1D9B Missense_Mutation p.A944V 0.19 deleterious(0.03) benign(0.04) TCGA-VQ-A8PB-01 5 179668088 179668088 G A MAPK9 Silent p.D313D 0.29 TCGA-VQ-A8PB-01 5 179755327 179755327 G A GFPT2 Silent p.F182F 0.34 TCGA-VQ-A8PB-01 5 179992921 179992921 A G CNOT6 Missense_Mutation p.K221E 0.30 deleterious(0) benign(0.142) TCGA-VQ-A8PB-01 5 180486786 180486786 G A BTNL9 Missense_Mutation p.G511D 0.21 tolerated(0.37) benign(0.013) TCGA-VQ-A8PB-01 5 32126581 32126581 G A GOLPH3 Missense_Mutation p.R212C 0.27 deleterious(0.04) benign(0.138) TCGA-VQ-A8PB-01 5 41927297 41927297 A - FBXO4 Frame_Shift_Del p.K126Sfs*46 0.26 TCGA-VQ-A8PB-01 5 45262665 45262666 - T HCN1 Frame_Shift_Ins p.N677Kfs*90 0.16 TCGA-VQ-A8PB-01 5 5186274 5186274 C T ADAMTS16 Silent p.N291N 0.27 TCGA-VQ-A8PB-01 5 5468947 5468947 C T KIAA0947 Missense_Mutation p.P2023L 0.23 deleterious(0) probably_damaging(1) TCGA-VQ-A8PB-01 5 57752371 57752371 T A PLK2 Missense_Mutation p.D401V 0.11 tolerated(0.1) benign(0.307) TCGA-VQ-A8PB-01 5 73205305 73205305 G C ARHGEF28 Silent p.L1410L 0.27 TCGA-VQ-A8PB-01 5 76331657 76331657 C T AGGF1 Intron 0.27 TCGA-VQ-A8PB-01 5 81460328 81460328 T A ATG10 Silent p.P109P 0.29 TCGA-VQ-A8PB-01 5 82834062 82834062 C T VCAN Missense_Mutation p.S1747L 0.25 tolerated(0.14) benign(0.023) TCGA-VQ-A8PB-01 5 889162 889162 C T BRD9 Missense_Mutation p.E194K 0.34 tolerated(0.09) benign(0.057) TCGA-VQ-A8PB-01 5 89953815 89953815 C T GPR98 Missense_Mutation p.T1491M 0.28 probably_damaging(0.981) TCGA-VQ-A8PB-01 6 10398532 10398532 A G TFAP2A 3'UTR 0.33 TCGA-VQ-A8PB-01 6 108395504 108395504 G - OSTM1 Frame_Shift_Del p.L118Sfs*30 0.19 TCGA-VQ-A8PB-01 6 108508577 108508577 A G NR2E1 Silent p.S356S 0.33 TCGA-VQ-A8PB-01 6 116836954 116836954 T - FAM26E Frame_Shift_Del p.F246Lfs*75 0.28 TCGA-VQ-A8PB-01 6 117586994 117586994 C - VGLL2 Frame_Shift_Del p.Y25Tfs*5 0.23 TCGA-VQ-A8PB-01 6 12292700 12292701 TC - EDN1 Frame_Shift_Del p.Y65Lfs*24 0.20 TCGA-VQ-A8PB-01 6 131919608 131919608 C T MED23 Splice_Site p.X809_splice 0.36 TCGA-VQ-A8PB-01 6 133044009 133044009 T - VNN3 3'Flank 0.32 TCGA-VQ-A8PB-01 6 13365638 13365638 G A GFOD1 Silent p.G170G 0.20 TCGA-VQ-A8PB-01 6 137814523 137814523 C T OLIG3 Missense_Mutation p.R262Q 0.43 deleterious(0.01) probably_damaging(0.953) TCGA-VQ-A8PB-01 6 138200394 138200394 G A TNFAIP3 Silent p.T604T 0.05 TCGA-VQ-A8PB-01 6 142400027 142400027 C T NMBR Missense_Mutation p.V146I 0.35 deleterious(0) probably_damaging(0.911) TCGA-VQ-A8PB-01 6 142409765 142409765 C T NMBR Missense_Mutation p.V11M 0.14 tolerated(0.23) benign(0.027) TCGA-VQ-A8PB-01 6 150063642 150063642 T C NUP43 Missense_Mutation p.Y129C 0.34 tolerated(0.69) benign(0) TCGA-VQ-A8PB-01 6 152683375 152683375 G A SYNE1 Missense_Mutation p.A3410V 0.30 benign(0.006) TCGA-VQ-A8PB-01 6 155465852 155465852 T C TIAM2 Silent p.H581H 0.30 TCGA-VQ-A8PB-01 6 157469889 157469889 C - ARID1B Frame_Shift_Del p.L896Wfs*18 0.21 TCGA-VQ-A8PB-01 6 163985687 163985687 T - QKI Intron 0.35 TCGA-VQ-A8PB-01 6 165715592 165715592 C T C6orf118 Silent p.P73P 0.26 TCGA-VQ-A8PB-01 6 170594072 170594072 A G DLL1 Missense_Mutation p.V395A 0.33 tolerated(0.63) benign(0.001) TCGA-VQ-A8PB-01 6 22570014 22570014 C A HDGFL1 Missense_Mutation p.N70K 0.30 deleterious(0.03) possibly_damaging(0.87) TCGA-VQ-A8PB-01 6 26032154 26032155 - C HIST1H3B Frame_Shift_Ins p.T46Hfs*53 0.27 TCGA-VQ-A8PB-01 6 26216649 26216649 C T HIST1H2BG Missense_Mutation p.A75T 0.23 deleterious_low_confidence(0.05) benign(0.165) TCGA-VQ-A8PB-01 6 26390341 26390341 T C BTN2A2 Missense_Mutation p.F278S 0.20 tolerated(0.34) benign(0.063) TCGA-VQ-A8PB-01 6 29408713 29408713 G T OR10C1 Silent p.T307T 0.06 TCGA-VQ-A8PB-01 6 29795962 29795962 C T HLA-G Missense_Mutation p.P71L 0.43 deleterious_low_confidence(0.01) benign(0.102) TCGA-VQ-A8PB-01 6 30309977 30309977 C T TRIM39 Missense_Mutation p.R500W 0.29 tolerated(0.18) probably_damaging(0.98) TCGA-VQ-A8PB-01 6 30860887 30860887 C T DDR1 Missense_Mutation p.P381L 0.29 tolerated(0.28) benign(0.207) TCGA-VQ-A8PB-01 6 31605349 31605349 C - PRRC2A Frame_Shift_Del p.P2155Hfs*58 0.34 TCGA-VQ-A8PB-01 6 31778193 31778193 G A HSPA1L Silent p.R519R 0.32 TCGA-VQ-A8PB-01 6 31779055 31779055 C A HSPA1L Missense_Mutation p.G232V 0.25 deleterious_low_confidence(0) possibly_damaging(0.741) TCGA-VQ-A8PB-01 6 31902013 31902013 G A C2 Silent p.S262S 0.37 TCGA-VQ-A8PB-01 6 31926206 31926206 G - NELFE Frame_Shift_Del p.G7Dfs*2 0.23 TCGA-VQ-A8PB-01 6 32122439 32122439 T C PPT2 Missense_Mutation p.L29P 0.28 tolerated(0.05) benign(0.144) TCGA-VQ-A8PB-01 6 32813311 32813313 AGA - TAP1 3'UTR 0.31 TCGA-VQ-A8PB-01 6 33248490 33248490 C - WDR46 Frame_Shift_Del p.V464Wfs*39 0.32 TCGA-VQ-A8PB-01 6 33287212 33287213 - G DAXX Frame_Shift_Ins p.C629Lfs*29 0.24 TCGA-VQ-A8PB-01 6 33646501 33646501 T G ITPR3 Missense_Mutation p.F1286C 0.40 deleterious(0) probably_damaging(0.969) TCGA-VQ-A8PB-01 6 37622131 37622131 G A MDGA1 Missense_Mutation p.R301W 0.32 deleterious(0) possibly_damaging(0.745) TCGA-VQ-A8PB-01 6 38905895 38905895 C A DNAH8 Silent p.T3686T 0.36 TCGA-VQ-A8PB-01 6 39285614 39285614 C T KCNK16 Missense_Mutation p.R148H 0.46 tolerated(0.08) benign(0.013) TCGA-VQ-A8PB-01 6 40996264 40996264 G A UNC5CL Nonsense_Mutation p.Q469* 0.28 TCGA-VQ-A8PB-01 6 41754785 41754785 G A PRICKLE4 Missense_Mutation p.R358H 0.34 deleterious(0) probably_damaging(0.972) TCGA-VQ-A8PB-01 6 42236979 42236979 G A TRERF1 Missense_Mutation p.T117I 0.15 tolerated_low_confidence(0.14) benign(0.09) TCGA-VQ-A8PB-01 6 43106938 43106938 G T PTK7 Missense_Mutation p.G484V 0.10 deleterious(0.03) probably_damaging(0.982) TCGA-VQ-A8PB-01 6 43164500 43164500 A G CUL9 Silent p.S901S 0.37 TCGA-VQ-A8PB-01 6 44147776 44147776 C T CAPN11 Missense_Mutation p.R506W 0.28 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8PB-01 6 49409620 49409620 G A MUT Nonsense_Mutation p.R581* 0.24 TCGA-VQ-A8PB-01 6 56472354 56472354 G T DST Intron 0.25 TCGA-VQ-A8PB-01 6 72011804 72011804 T C OGFRL1 3'UTR 0.15 TCGA-VQ-A8PB-01 6 73843209 73843209 G A KCNQ5 Missense_Mutation p.R457Q 0.29 tolerated(0.05) benign(0.049) TCGA-VQ-A8PB-01 6 74228297 74228297 C A EEF1A1 Missense_Mutation p.G270V 0.17 deleterious_low_confidence(0) probably_damaging(0.975) TCGA-VQ-A8PB-01 6 75840570 75840570 G A COL12A1 Missense_Mutation p.T2022M 0.33 probably_damaging(0.947) TCGA-VQ-A8PB-01 6 75968498 75968498 T C TMEM30A Missense_Mutation p.Y297C 0.30 deleterious(0) possibly_damaging(0.624) TCGA-VQ-A8PB-01 6 78172783 78172783 C T HTR1B Missense_Mutation p.G113D 0.22 tolerated(0.47) possibly_damaging(0.516) TCGA-VQ-A8PB-01 6 80383444 80383444 C - SH3BGRL2 Frame_Shift_Del p.P55Rfs*41 0.15 TCGA-VQ-A8PB-01 6 89554097 89554097 A - RNGTT Frame_Shift_Del p.F416Lfs*18 0.25 TCGA-VQ-A8PB-01 6 90578474 90578474 A G CASP8AP2 RNA 0.30 TCGA-VQ-A8PB-01 6 90660046 90660046 G A BACH2 Silent p.S593S 0.28 TCGA-VQ-A8PB-01 7 100146505 100146505 T C AGFG2 Silent p.P94P 0.19 TCGA-VQ-A8PB-01 7 100681088 100681088 A G MUC17 Missense_Mutation p.S2131G 0.04 unknown(0) TCGA-VQ-A8PB-01 7 102257181 102257181 T C RASA4 5'UTR 0.15 TCGA-VQ-A8PB-01 7 1028394 1028394 C T CYP2W1 Missense_Mutation p.T470M 0.27 deleterious(0.04) benign(0.329) TCGA-VQ-A8PB-01 7 103183203 103183203 G A RELN Nonsense_Mutation p.R2216* 0.19 TCGA-VQ-A8PB-01 7 103969502 103969502 G A LHFPL3 Missense_Mutation p.G92D 0.24 deleterious(0) possibly_damaging(0.761) TCGA-VQ-A8PB-01 7 10973206 10973206 G A NDUFA4 3'UTR 0.43 TCGA-VQ-A8PB-01 7 10973276 10973276 C T NDUFA4 Missense_Mutation p.R78H 0.23 tolerated(0.05) benign(0.005) TCGA-VQ-A8PB-01 7 112413045 112413045 C T TMEM168 Missense_Mutation p.G446D 0.46 tolerated(0.15) possibly_damaging(0.872) TCGA-VQ-A8PB-01 7 117232267 117232267 A - CFTR Frame_Shift_Del p.K684Nfs*38 0.21 TCGA-VQ-A8PB-01 7 121717920 121717920 G A AASS Silent p.T878T 0.22 TCGA-VQ-A8PB-01 7 12271529 12271529 C T TMEM106B Silent p.V251V 0.20 TCGA-VQ-A8PB-01 7 127729669 127729669 C T SND1 Silent p.G849G 0.45 TCGA-VQ-A8PB-01 7 128034564 128034564 G A IMPDH1 Missense_Mutation p.A547V 0.45 tolerated(0.17) benign(0.024) TCGA-VQ-A8PB-01 7 128851591 128851591 T C SMO Missense_Mutation p.V639A 0.20 deleterious(0.02) possibly_damaging(0.664) TCGA-VQ-A8PB-01 7 130135292 130135292 C - MEST Frame_Shift_Del p.P38Lfs*34 0.21 TCGA-VQ-A8PB-01 7 138279229 138279229 A T SVOPL 3'Flank 0.33 TCGA-VQ-A8PB-01 7 141352747 141352747 A G AGK 3'UTR 0.15 TCGA-VQ-A8PB-01 7 143029875 143029875 C T CLCN1 Missense_Mutation p.A437V 0.20 tolerated(0.32) benign(0.002) TCGA-VQ-A8PB-01 7 150772492 150772492 C T SLC4A2 Silent p.N1066N 0.46 TCGA-VQ-A8PB-01 7 26404122 26404122 G T SNX10 Intron 0.49 TCGA-VQ-A8PB-01 7 27142212 27142212 A - HOXA2 5'UTR 0.45 TCGA-VQ-A8PB-01 7 27284874 27284874 G A EVX1 Missense_Mutation p.R212Q 0.14 deleterious(0) probably_damaging(1) TCGA-VQ-A8PB-01 7 2771096 2771096 C T GNA12 Missense_Mutation p.V289I 0.28 tolerated(0.19) possibly_damaging(0.625) TCGA-VQ-A8PB-01 7 36438706 36438706 C T ANLN Missense_Mutation p.P64L 0.15 deleterious(0.02) benign(0.322) TCGA-VQ-A8PB-01 7 39606026 39606026 G T YAE1D1 Missense_Mutation p.W3C 0.22 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PB-01 7 4089024 4089024 T C SDK1 Missense_Mutation p.S883P 0.36 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8PB-01 7 4308241 4308241 G A SDK1 3'UTR 0.08 TCGA-VQ-A8PB-01 7 44573375 44573375 C T NPC1L1 Silent p.L748L 0.30 TCGA-VQ-A8PB-01 7 45688393 45688393 T C ADCY1 Missense_Mutation p.I382T 0.22 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PB-01 7 45931539 45931539 C T IGFBP1 Silent p.C176C 0.45 TCGA-VQ-A8PB-01 7 55750377 55750377 G A RNU6-389P 5'Flank 0.09 TCGA-VQ-A8PB-01 7 5633051 5633051 G A FSCN1 Missense_Mutation p.E162K 0.23 deleterious(0.03) probably_damaging(0.998) TCGA-VQ-A8PB-01 7 6085740 6085740 T - EIF2AK1 Frame_Shift_Del p.I198Sfs*2 0.39 TCGA-VQ-A8PB-01 7 66420706 66420706 G A TMEM248 3'UTR 0.46 TCGA-VQ-A8PB-01 7 72658306 72658306 G A GTF2IRD2P1 RNA 0.14 TCGA-VQ-A8PB-01 7 73119480 73119483 TCTT - STX1A Frame_Shift_Del p.K94Afs*12 0.23 TCGA-VQ-A8PB-01 7 77256832 77256833 CT - PTPN12 Frame_Shift_Del p.S613* 0.30 TCGA-VQ-A8PB-01 7 77797303 77797303 G A MAGI2 Silent p.I842I 0.45 TCGA-VQ-A8PB-01 7 81662170 81662170 C T CACNA2D1 Silent p.T362T 0.32 TCGA-VQ-A8PB-01 7 82538314 82538314 C T PCLO Missense_Mutation p.R4439H 0.38 unknown(0) TCGA-VQ-A8PB-01 7 82586065 82586065 T C PCLO Missense_Mutation p.S1402G 0.43 unknown(0) TCGA-VQ-A8PB-01 7 82595628 82595628 T - PCLO Frame_Shift_Del p.K1159Sfs*6 0.21 TCGA-VQ-A8PB-01 7 82764307 82764307 T C PCLO Silent p.E853E 0.04 TCGA-VQ-A8PB-01 7 88389227 88389227 G A ZNF804B 5'UTR 0.44 TCGA-VQ-A8PB-01 7 92132427 92132427 T C PEX1 Silent p.L718L 0.26 TCGA-VQ-A8PB-01 7 94881130 94881130 A - PPP1R9A Frame_Shift_Del p.A820Lfs*24 0.16 TCGA-VQ-A8PB-01 7 97822484 97822484 C T LMTK2 Missense_Mutation p.L903F 0.26 tolerated(0.36) benign(0.002) TCGA-VQ-A8PB-01 7 99161742 99161742 G A ZNF655 Intron 0.51 TCGA-VQ-A8PB-01 7 99303086 99303086 G T CYP3A7 3'UTR 0.40 TCGA-VQ-A8PB-01 7 99918720 99918720 T C SPDYE3 3'UTR 0.39 TCGA-VQ-A8PB-01 8 100123388 100123388 C T VPS13B Missense_Mutation p.R215W 0.20 deleterious(0) possibly_damaging(0.876) TCGA-VQ-A8PB-01 8 101153018 101153018 C A FBXO43 Missense_Mutation p.K488N 0.17 deleterious(0) probably_damaging(0.917) TCGA-VQ-A8PB-01 8 103289349 103289349 T - UBR5 Frame_Shift_Del p.E2121Kfs*28 0.21 TCGA-VQ-A8PB-01 8 103323963 103323963 C T UBR5 Silent p.Q806Q 0.17 TCGA-VQ-A8PB-01 8 103324082 103324082 G A UBR5 Nonsense_Mutation p.R767* 0.26 TCGA-VQ-A8PB-01 8 103372870 103372870 A G UBR5 Silent p.G71G 0.24 TCGA-VQ-A8PB-01 8 103855848 103855848 G A AZIN1 Silent p.S11S 0.16 TCGA-VQ-A8PB-01 8 10583951 10583952 - C SOX7 Frame_Shift_Ins p.A207Gfs*10 0.28 TCGA-VQ-A8PB-01 8 107781976 107781976 T A ABRA Missense_Mutation p.D148V 0.24 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PB-01 8 108264200 108264200 C A ANGPT1 Missense_Mutation p.M460I 0.18 tolerated(1) benign(0.001) TCGA-VQ-A8PB-01 8 110468613 110468613 G T PKHD1L1 Nonsense_Mutation p.G2333* 0.18 TCGA-VQ-A8PB-01 8 113599333 113599333 C T CSMD3 Missense_Mutation p.A1283T 0.07 deleterious(0.03) probably_damaging(0.992) TCGA-VQ-A8PB-01 8 116426269 116426270 - T TRPS1 Frame_Shift_Ins p.N1289Kfs*5 0.19 TCGA-VQ-A8PB-01 8 11689124 11689124 T C FDFT1 Missense_Mutation p.M326T 0.28 tolerated(0.47) probably_damaging(0.942) TCGA-VQ-A8PB-01 8 119938839 119938839 T C TNFRSF11B Silent p.V237V 0.24 TCGA-VQ-A8PB-01 8 120608188 120608188 C T ENPP2 Missense_Mutation p.A343T 0.29 tolerated_low_confidence(1) benign(0.001) TCGA-VQ-A8PB-01 8 132052037 132052037 C T ADCY8 Silent p.S181S 0.20 TCGA-VQ-A8PB-01 8 135612914 135612914 A - ZFAT Intron 0.15 TCGA-VQ-A8PB-01 8 13947963 13947963 G T SGCZ Missense_Mutation p.L310M 0.20 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PB-01 8 139672718 139672718 T C COL22A1 Silent p.A1082A 0.22 TCGA-VQ-A8PB-01 8 139703091 139703091 G - COL22A1 Frame_Shift_Del p.G928Vfs*74 0.37 TCGA-VQ-A8PB-01 8 142160966 142160966 C G DENND3 Missense_Mutation p.P177A 0.17 deleterious(0) probably_damaging(1) TCGA-VQ-A8PB-01 8 142229127 142229127 G T SLC45A4 Silent p.G153G 0.27 TCGA-VQ-A8PB-01 8 144406219 144406219 G A TOP1MT Missense_Mutation p.R304W 0.21 deleterious(0) possibly_damaging(0.846) TCGA-VQ-A8PB-01 8 144941378 144941378 C - EPPK1 Frame_Shift_Del p.G2015Vfs*36 0.20 TCGA-VQ-A8PB-01 8 144995153 144995153 G A PLEC Missense_Mutation p.R3083C 0.20 probably_damaging(0.982) TCGA-VQ-A8PB-01 8 144997395 144997395 G A PLEC Silent p.R2371R 0.16 TCGA-VQ-A8PB-01 8 145065717 145065717 T C GRINA Missense_Mutation p.F109S 0.21 tolerated(0.18) benign(0.011) TCGA-VQ-A8PB-01 8 145245738 145245738 G A MROH1 Missense_Mutation p.R205Q 0.27 tolerated(1) benign(0.002) TCGA-VQ-A8PB-01 8 145638248 145638248 G A SLC39A4 Silent p.F570F 0.12 TCGA-VQ-A8PB-01 8 17401097 17401097 C T SLC7A2 Silent p.G123G 0.26 TCGA-VQ-A8PB-01 8 17579221 17579221 T - MTUS1 Intron 0.17 TCGA-VQ-A8PB-01 8 17611442 17611442 G A MTUS1 Silent p.C625C 0.29 TCGA-VQ-A8PB-01 8 18541387 18541387 C T PSD3 Intron 0.22 TCGA-VQ-A8PB-01 8 20036930 20036930 C T SLC18A1 Missense_Mutation p.G64S 0.26 tolerated(0.68) benign(0.002) TCGA-VQ-A8PB-01 8 2050540 2050540 G A MYOM2 Silent p.T901T 0.23 TCGA-VQ-A8PB-01 8 21769886 21769886 G A DOK2 Missense_Mutation p.R67W 0.33 deleterious(0.02) probably_damaging(0.953) TCGA-VQ-A8PB-01 8 22167512 22167512 A - PIWIL2 Frame_Shift_Del p.N577Ifs*10 0.20 TCGA-VQ-A8PB-01 8 24813310 24813310 G A CTD-2168K21.2 5'Flank 0.16 TCGA-VQ-A8PB-01 8 25745485 25745485 G A EBF2 Missense_Mutation p.T252I 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-VQ-A8PB-01 8 27729472 27729472 G A SCARA5 Silent p.S489S 0.25 TCGA-VQ-A8PB-01 8 27880849 27880849 G - NUGGC Frame_Shift_Del p.T794Hfs*159 0.19 TCGA-VQ-A8PB-01 8 2836154 2836154 C T CSMD1 Missense_Mutation p.R2849Q 0.25 probably_damaging(0.999) TCGA-VQ-A8PB-01 8 30539550 30539550 G T GSR Silent p.A394A 0.19 TCGA-VQ-A8PB-01 8 30703615 30703615 G A TEX15 Silent p.H973H 0.20 TCGA-VQ-A8PB-01 8 37602261 37602261 G A ERLIN2 Intron 0.14 TCGA-VQ-A8PB-01 8 38854635 38854635 T G ADAM9 Missense_Mutation p.L18R 0.25 deleterious(0) possibly_damaging(0.57) TCGA-VQ-A8PB-01 8 42033473 42033473 G A PLAT 3'UTR 0.35 TCGA-VQ-A8PB-01 8 42868292 42868292 A G HOOK3 Silent p.S646S 0.16 TCGA-VQ-A8PB-01 8 52252229 52252229 C T PXDNL Silent p.T1367T 0.23 TCGA-VQ-A8PB-01 8 57079238 57079238 A G PLAG1 Missense_Mutation p.I356T 0.29 tolerated(0.25) benign(0.076) TCGA-VQ-A8PB-01 8 61654496 61654496 C T CHD7 Missense_Mutation p.P169S 0.18 benign(0) TCGA-VQ-A8PB-01 8 623865 623865 T - ERICH1 Frame_Shift_Del p.R163Gfs*3 0.14 TCGA-VQ-A8PB-01 8 69031707 69031707 A T PREX2 Missense_Mutation p.K1154N 0.20 deleterious(0) probably_damaging(0.959) TCGA-VQ-A8PB-01 8 70744245 70744246 - G SLCO5A1 Frame_Shift_Ins p.Y222Lfs*38 0.20 TCGA-VQ-A8PB-01 8 70964297 70964297 T C PRDM14 3'UTR 0.14 TCGA-VQ-A8PB-01 8 72935106 72935106 C - TRPA1 3'UTR 0.18 TCGA-VQ-A8PB-01 8 86573828 86573828 G A REXO1L1P Silent p.S633S 0.12 TCGA-VQ-A8PB-01 8 88885101 88885101 C T DCAF4L2 Missense_Mutation p.A367T 0.16 deleterious(0.01) possibly_damaging(0.781) TCGA-VQ-A8PB-01 8 8998279 8998279 C T PPP1R3B 3'UTR 0.13 TCGA-VQ-A8PB-01 8 95538910 95538910 A - KIAA1429 Frame_Shift_Del p.L521* 0.23 TCGA-VQ-A8PB-01 9 100849810 100849810 G A TRIM14 Missense_Mutation p.P424L 0.33 tolerated(0.07) possibly_damaging(0.563) TCGA-VQ-A8PB-01 9 103088659 103088659 C T TEX10 Missense_Mutation p.R635Q 0.31 tolerated(0.64) benign(0) TCGA-VQ-A8PB-01 9 107267058 107267058 G A OR13F1 Missense_Mutation p.S172N 0.11 tolerated(1) benign(0.005) TCGA-VQ-A8PB-01 9 107379964 107379964 G A OR13C9 Silent p.I174I 0.36 TCGA-VQ-A8PB-01 9 111653566 111653566 C T IKBKAP Missense_Mutation p.G1026D 0.30 tolerated(0.15) possibly_damaging(0.493) TCGA-VQ-A8PB-01 9 111663805 111663805 C T IKBKAP Silent p.A638A 0.36 TCGA-VQ-A8PB-01 9 116151264 116151264 G A ALAD Silent p.R308R 0.10 TCGA-VQ-A8PB-01 9 119094666 119094666 G A PAPPA Missense_Mutation p.D1106N 0.33 deleterious(0) possibly_damaging(0.539) TCGA-VQ-A8PB-01 9 123924525 123924525 A - CNTRL Frame_Shift_Del p.K1802Sfs*9 0.22 TCGA-VQ-A8PB-01 9 124091593 124091593 G T GSN Missense_Mutation p.Q706H 0.20 deleterious(0) probably_damaging(0.991) TCGA-VQ-A8PB-01 9 127561679 127561679 A G OLFML2A Missense_Mutation p.K193R 0.33 tolerated(0.09) probably_damaging(0.98) TCGA-VQ-A8PB-01 9 129458804 129458804 C - LMX1B 3'UTR 0.26 TCGA-VQ-A8PB-01 9 130167188 130167188 G A SLC2A8 Silent p.S356S 0.43 TCGA-VQ-A8PB-01 9 130279269 130279269 G A FAM129B Silent p.Y280Y 0.37 TCGA-VQ-A8PB-01 9 130289580 130289580 C T FAM129B Missense_Mutation p.V70I 0.17 tolerated(1) benign(0.001) TCGA-VQ-A8PB-01 9 131750390 131750390 G A NUP188 Missense_Mutation p.V820I 0.28 tolerated(0.24) benign(0.062) TCGA-VQ-A8PB-01 9 132571893 132571893 G - TOR1B 3'UTR 0.15 TCGA-VQ-A8PB-01 9 136217479 136217479 C T RPL7A Missense_Mutation p.R175C 0.41 tolerated(0.09) benign(0.023) TCGA-VQ-A8PB-01 9 136328610 136328610 G A CACFD1 Missense_Mutation p.A43T 0.38 deleterious(0.05) possibly_damaging(0.454) TCGA-VQ-A8PB-01 9 136643928 136643928 C T VAV2 Missense_Mutation p.V616M 0.24 deleterious(0.05) possibly_damaging(0.704) TCGA-VQ-A8PB-01 9 138377428 138377428 G A PPP1R26 Missense_Mutation p.E358K 0.23 tolerated(0.31) benign(0.004) TCGA-VQ-A8PB-01 9 138651597 138651597 C T KCNT1 Silent p.I309I 0.25 TCGA-VQ-A8PB-01 9 16436006 16436006 G A BNC2 Missense_Mutation p.S729L 0.36 deleterious(0.03) possibly_damaging(0.493) TCGA-VQ-A8PB-01 9 20885183 20885183 G A FOCAD Missense_Mutation p.S860N 0.36 tolerated(0.26) benign(0.016) TCGA-VQ-A8PB-01 9 21217189 21217189 A C IFNA16 Missense_Mutation p.I39R 0.29 tolerated(0.5) benign(0.035) TCGA-VQ-A8PB-01 9 2650372 2650372 A G VLDLR Missense_Mutation p.K703E 0.29 tolerated(1) benign(0.044) TCGA-VQ-A8PB-01 9 32633022 32633022 G T TAF1L Silent p.A852A 0.08 TCGA-VQ-A8PB-01 9 33258964 33258964 G A BAG1 Missense_Mutation p.A244V 0.28 deleterious(0.03) possibly_damaging(0.594) TCGA-VQ-A8PB-01 9 34621512 34621512 A G ARID3C Silent p.G394G 0.34 TCGA-VQ-A8PB-01 9 35607348 35607348 C T TESK1 Nonsense_Mutation p.R188* 0.24 TCGA-VQ-A8PB-01 9 36108008 36108008 C T RECK Missense_Mutation p.R538C 0.22 deleterious(0.01) possibly_damaging(0.642) TCGA-VQ-A8PB-01 9 69206951 69206951 A G CBWD6 Silent p.F279F 0.10 TCGA-VQ-A8PB-01 9 71155765 71155765 C T TMEM252 5'UTR 0.27 TCGA-VQ-A8PB-01 9 74315668 74315668 C T TMEM2 Silent p.Q1089Q 0.30 TCGA-VQ-A8PB-01 9 86894928 86894928 G A SLC28A3 Missense_Mutation p.A597V 0.38 deleterious(0.02) probably_damaging(0.973) TCGA-VQ-A8PB-01 9 93650066 93650066 C T SYK Silent p.Y539Y 0.30 TCGA-VQ-A8PB-01 9 93983262 93983262 C T AUH Missense_Mutation p.R223Q 0.21 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8PB-01 X 100276099 100276099 A G TRMT2B Missense_Mutation p.C353R 0.14 deleterious(0) probably_damaging(0.993) TCGA-VQ-A8PB-01 X 10180515 10180515 G A CLCN4 Silent p.S466S 0.27 TCGA-VQ-A8PB-01 X 104463955 104463955 A G TEX13A Silent p.P307P 0.25 TCGA-VQ-A8PB-01 X 106070675 106070675 T - TBC1D8B Intron 0.38 TCGA-VQ-A8PB-01 X 109764453 109764453 C A TDGF1P3 RNA 0.07 TCGA-VQ-A8PB-01 X 110492259 110492259 C T CAPN6 Silent p.G395G 0.28 TCGA-VQ-A8PB-01 X 118238971 118238971 C A KIAA1210 Missense_Mutation p.S351I 0.31 tolerated(1) benign(0) TCGA-VQ-A8PB-01 X 118679450 118679450 C T CXorf56 Missense_Mutation p.R87Q 0.30 tolerated(0.35) benign(0.13) TCGA-VQ-A8PB-01 X 125686240 125686240 T C DCAF12L1 Missense_Mutation p.N118D 0.26 deleterious(0) probably_damaging(0.983) TCGA-VQ-A8PB-01 X 129364537 129364537 A C ZNF280C Silent p.T312T 0.31 TCGA-VQ-A8PB-01 X 13058979 13058979 T C FAM9C Missense_Mutation p.E76G 0.33 deleterious(0.02) benign(0.036) TCGA-VQ-A8PB-01 X 134185793 134185793 C T FAM127B 3'UTR 0.38 TCGA-VQ-A8PB-01 X 134186214 134186214 C T FAM127B 5'Flank 0.32 TCGA-VQ-A8PB-01 X 135314194 135314194 G - MAP7D3 Frame_Shift_Del p.Q308Rfs*2 0.24 TCGA-VQ-A8PB-01 X 135429851 135429851 C T GPR112 Missense_Mutation p.A1329V 0.27 tolerated(0.21) benign(0.002) TCGA-VQ-A8PB-01 X 135961600 135961600 T G RBMX 5'UTR 0.32 TCGA-VQ-A8PB-01 X 144904479 144904479 G A SLITRK2 Missense_Mutation p.R179H 0.26 deleterious(0.01) possibly_damaging(0.679) TCGA-VQ-A8PB-01 X 148794841 148794841 G - MAGEA11 Frame_Shift_Del p.G9Vfs*25 0.21 TCGA-VQ-A8PB-01 X 150573517 150573517 G A VMA21 Missense_Mutation p.G98D 0.21 deleterious(0.02) probably_damaging(0.998) TCGA-VQ-A8PB-01 X 153175810 153175810 G A ARHGAP4 Silent p.A697A 0.32 TCGA-VQ-A8PB-01 X 153195585 153195585 G T NAA10 Missense_Mutation p.P188Q 0.36 tolerated(0.07) benign(0.291) TCGA-VQ-A8PB-01 X 153714195 153714195 G - UBL4A Frame_Shift_Del p.P93Rfs*6 0.27 TCGA-VQ-A8PB-01 X 155003740 155003740 C A SPRY3 Nonsense_Mutation p.C69* 0.26 TCGA-VQ-A8PB-01 X 17744069 17744069 G A NHS Missense_Mutation p.V594I 0.36 tolerated(0.06) probably_damaging(0.997) TCGA-VQ-A8PB-01 X 19002087 19002087 C T PHKA2 5'UTR 0.40 TCGA-VQ-A8PB-01 X 19027779 19027779 T G GPR64 Missense_Mutation p.T463P 0.05 deleterious(0.02) possibly_damaging(0.643) TCGA-VQ-A8PB-01 X 20043161 20043161 C A MAP7D2 Missense_Mutation p.E440D 0.05 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PB-01 X 30671538 30671538 G C GK 5'UTR 0.22 TCGA-VQ-A8PB-01 X 31676159 31676159 C - DMD Frame_Shift_Del p.V2659Sfs*3 0.18 TCGA-VQ-A8PB-01 X 32509516 32509516 C T DMD Missense_Mutation p.A834T 0.23 benign(0) TCGA-VQ-A8PB-01 X 34148001 34148001 G C FAM47A 3'UTR 0.27 TCGA-VQ-A8PB-01 X 38664667 38664668 TG - MID1IP1 Frame_Shift_Del p.V157Afs*13 0.21 TCGA-VQ-A8PB-01 X 41201764 41201764 C T DDX3X Missense_Mutation p.R101W 0.24 tolerated(0.16) benign(0.001) TCGA-VQ-A8PB-01 X 48760728 48760728 A G SLC35A2 Missense_Mutation p.V393A 0.20 tolerated_low_confidence(0.5) benign(0) TCGA-VQ-A8PB-01 X 48847614 48847614 C A GRIPAP1 Intron 0.38 TCGA-VQ-A8PB-01 X 53570824 53570824 C T HUWE1 Missense_Mutation p.R3786Q 0.38 unknown(0) TCGA-VQ-A8PB-01 X 54319442 54319442 G A WNK3 Missense_Mutation p.P639L 0.17 tolerated(0.07) benign(0.001) TCGA-VQ-A8PB-01 X 66766113 66766113 G A AR Silent p.P375P 0.47 TCGA-VQ-A8PB-01 X 66766473 66766473 C T AR Silent p.S495S 0.33 TCGA-VQ-A8PB-01 X 70342432 70342432 C T MED12 Silent p.F441F 0.25 TCGA-VQ-A8PB-01 X 72434118 72434118 C - NAP1L2 Frame_Shift_Del p.E71Kfs*26 0.23 TCGA-VQ-A8PB-01 X 73046057 73046057 T - XIST RNA 0.25 TCGA-VQ-A8PB-01 X 90690853 90690853 T C PABPC5 Missense_Mutation p.W93R 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A8PB-01 X 92928174 92928174 C T NAP1L3 Missense_Mutation p.D44N 0.06 tolerated(0.47) benign(0) TCGA-VQ-A8PC-01 10 108439042 108439042 G T SORCS1 Missense_Mutation p.S571Y 0.09 deleterious(0) probably_damaging(0.978) TCGA-VQ-A8PC-01 10 50820226 50820226 C T SLC18A3 Silent p.S480S 0.07 TCGA-VQ-A8PC-01 10 55582388 55582388 G C PCDH15 Missense_Mutation p.L1702V 0.06 tolerated_low_confidence(0.06) benign(0.027) TCGA-VQ-A8PC-01 10 60544809 60544809 A C BICC1 Missense_Mutation p.K119T 0.09 deleterious(0) benign(0.096) TCGA-VQ-A8PC-01 10 84744957 84744957 C A NRG3 Missense_Mutation p.L563M 0.11 tolerated(0.13) benign(0.14) TCGA-VQ-A8PC-01 11 101343031 101343031 G A TRPC6 Missense_Mutation p.A681V 0.21 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PC-01 11 104817821 104817821 C A CASP4 Missense_Mutation p.V342L 0.16 deleterious(0.04) benign(0.122) TCGA-VQ-A8PC-01 11 108121706 108121706 T G ATM Missense_Mutation p.F505C 0.15 deleterious(0) probably_damaging(0.984) TCGA-VQ-A8PC-01 11 122930276 122930276 C G HSPA8 Missense_Mutation p.R342P 0.07 deleterious_low_confidence(0.01) probably_damaging(0.971) TCGA-VQ-A8PC-01 11 123810609 123810609 G T OR4D5 Nonsense_Mutation p.G96* 0.16 TCGA-VQ-A8PC-01 11 27384660 27384660 G A CCDC34 Missense_Mutation p.P28S 0.41 tolerated_low_confidence(0.17) benign(0.118) TCGA-VQ-A8PC-01 11 55944903 55944903 A C OR5J2 Missense_Mutation p.Q270H 0.10 tolerated(0.18) benign(0.183) TCGA-VQ-A8PC-01 11 56380663 56380663 C T OR5M1 Missense_Mutation p.A106T 0.06 tolerated(0.46) benign(0.035) TCGA-VQ-A8PC-01 11 5905613 5905613 T G OR52E4 Missense_Mutation p.F31V 0.19 tolerated(0.12) benign(0.022) TCGA-VQ-A8PC-01 11 5905781 5905781 T A OR52E4 Missense_Mutation p.F87I 0.22 deleterious(0) benign(0.36) TCGA-VQ-A8PC-01 11 60668348 60668348 G A PRPF19 Silent p.S232S 0.15 TCGA-VQ-A8PC-01 11 62744335 62744335 T C SLC22A6 Silent p.R541R 0.12 TCGA-VQ-A8PC-01 11 64679656 64679656 T C ATG2A Missense_Mutation p.I330V 0.05 tolerated(0.21) probably_damaging(0.992) TCGA-VQ-A8PC-01 11 66255448 66255448 G A DPP3 Missense_Mutation p.E213K 0.10 deleterious(0.04) benign(0.083) TCGA-VQ-A8PC-01 11 85711708 85711708 A T PICALM Missense_Mutation p.S378T 0.17 tolerated(0.06) benign(0.211) TCGA-VQ-A8PC-01 11 88300428 88300428 A C GRM5 Missense_Mutation p.L808R 0.20 deleterious(0) probably_damaging(1) TCGA-VQ-A8PC-01 11 88924492 88924492 T G TYR Silent p.S314S 0.12 TCGA-VQ-A8PC-01 12 14958890 14958890 C T SMCO3 3'UTR 0.09 TCGA-VQ-A8PC-01 12 53233750 53233750 C T KRT78 Missense_Mutation p.A356T 0.08 tolerated(0.06) benign(0.213) TCGA-VQ-A8PC-01 12 7843300 7843300 C A GDF3 Missense_Mutation p.G90V 0.08 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8PC-01 12 89891114 89891114 C T POC1B Missense_Mutation p.A36T 0.10 tolerated(0.08) benign(0.009) TCGA-VQ-A8PC-01 12 91449535 91449535 T G KERA Missense_Mutation p.N175T 0.07 deleterious(0.04) benign(0.143) TCGA-VQ-A8PC-01 13 23908271 23908271 C T SACS Nonsense_Mutation p.W3248* 0.18 TCGA-VQ-A8PC-01 13 36767948 36767948 A C SOHLH2 Missense_Mutation p.F184C 0.13 tolerated(0.09) benign(0.21) TCGA-VQ-A8PC-01 13 39262875 39262875 C T FREM2 Missense_Mutation p.P465L 0.15 tolerated(0.19) benign(0) TCGA-VQ-A8PC-01 13 58208940 58208940 G - PCDH17 Frame_Shift_Del p.G755Afs*26 0.11 TCGA-VQ-A8PC-01 13 60565376 60565376 C A DIAPH3 Missense_Mutation p.S426I 0.14 deleterious(0) possibly_damaging(0.633) TCGA-VQ-A8PC-01 14 105420092 105420092 T C AHNAK2 Missense_Mutation p.T566A 0.08 benign(0.061) TCGA-VQ-A8PC-01 14 33293356 33293356 T G AKAP6 Missense_Mutation p.L2113V 0.20 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8PC-01 14 94155052 94155052 C A UNC79 Silent p.T2179T 0.12 TCGA-VQ-A8PC-01 15 22382666 22382666 A C OR4N4 Missense_Mutation p.N65T 0.13 deleterious(0.01) possibly_damaging(0.698) TCGA-VQ-A8PC-01 15 25304751 25304751 A T SNORD116-3 3'Flank 0.09 TCGA-VQ-A8PC-01 15 41812685 41812685 G A RPAP1 Silent p.L1233L 0.33 TCGA-VQ-A8PC-01 15 51041925 51041925 T C SPPL2A Missense_Mutation p.I29V 0.09 tolerated(0.94) benign(0.015) TCGA-VQ-A8PC-01 15 77406726 77406726 G A PEAK1 Silent p.R1671R 0.16 TCGA-VQ-A8PC-01 15 82335532 82335532 G A MEX3B Missense_Mutation p.A560V 0.15 deleterious(0.02) benign(0.338) TCGA-VQ-A8PC-01 16 19883839 19883839 G A GPRC5B Missense_Mutation p.T110M 0.23 deleterious(0) probably_damaging(0.976) TCGA-VQ-A8PC-01 16 23101964 23101964 T C USP31 Missense_Mutation p.T466A 0.31 tolerated(0.5) benign(0.17) TCGA-VQ-A8PC-01 16 3065690 3065690 C A CLDN6 Missense_Mutation p.K111N 0.32 tolerated(0.05) benign(0.392) TCGA-VQ-A8PC-01 16 80718568 80718568 G A CDYL2 Silent p.A161A 0.19 TCGA-VQ-A8PC-01 17 11806166 11806166 C A DNAH9 Missense_Mutation p.T3846K 0.08 possibly_damaging(0.616) TCGA-VQ-A8PC-01 17 37006701 37006701 C T RPL23 Missense_Mutation p.R85Q 0.16 tolerated(0.07) benign(0.1) TCGA-VQ-A8PC-01 17 38511563 38511563 C A RARA Missense_Mutation p.P354Q 0.32 deleterious(0.01) probably_damaging(0.998) TCGA-VQ-A8PC-01 17 40061775 40061775 C G ACLY Missense_Mutation p.G335R 0.06 deleterious(0) probably_damaging(0.993) TCGA-VQ-A8PC-01 17 7245619 7245619 G A ACAP1 Missense_Mutation p.S86N 0.08 deleterious(0.05) benign(0.135) TCGA-VQ-A8PC-01 17 7577498 7577498 C T TP53 Splice_Site p.X261_splice 0.20 TCGA-VQ-A8PC-01 18 28918380 28918380 C T DSG1 Silent p.L456L 0.14 TCGA-VQ-A8PC-01 18 44260244 44260244 G A ST8SIA5 Missense_Mutation p.R298C 0.12 probably_damaging(0.999) TCGA-VQ-A8PC-01 18 44559972 44559972 A G TCEB3B Missense_Mutation p.L555P 0.10 deleterious(0) possibly_damaging(0.754) TCGA-VQ-A8PC-01 18 50731646 50731646 T G DCC Missense_Mutation p.L545R 0.14 tolerated(0.55) possibly_damaging(0.456) TCGA-VQ-A8PC-01 18 55024348 55024348 G A ST8SIA3 Silent p.G169G 0.10 TCGA-VQ-A8PC-01 18 7050932 7050932 A G LAMA1 Missense_Mutation p.F117L 0.14 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8PC-01 19 10439533 10439533 T C RAVER1 Missense_Mutation p.M198V 0.24 deleterious(0) probably_damaging(0.984) TCGA-VQ-A8PC-01 19 11545619 11545619 C A CCDC151 Missense_Mutation p.E73D 0.14 deleterious(0.03) possibly_damaging(0.728) TCGA-VQ-A8PC-01 19 3162809 3162809 A T GNA15 Missense_Mutation p.E306V 0.09 tolerated(0.13) possibly_damaging(0.475) TCGA-VQ-A8PC-01 19 38229854 38229854 G C ZNF573 Missense_Mutation p.L513V 0.13 deleterious(0) possibly_damaging(0.78) TCGA-VQ-A8PC-01 19 43575899 43575899 G A PSG2 Missense_Mutation p.S306L 0.19 tolerated(0.05) probably_damaging(0.942) TCGA-VQ-A8PC-01 19 44118466 44118466 A T ZNF428 5'UTR 0.11 TCGA-VQ-A8PC-01 19 52272081 52272081 G A FPR2 Missense_Mutation p.R57H 0.15 tolerated(0.48) benign(0.044) TCGA-VQ-A8PC-01 19 56467420 56467420 T G NLRP8 Missense_Mutation p.F666V 0.06 tolerated(0.47) benign(0.001) TCGA-VQ-A8PC-01 19 9018132 9018132 C A MUC16 Splice_Site p.X12602_splice 0.05 TCGA-VQ-A8PC-01 19 9088274 9088274 T A MUC16 Missense_Mutation p.I1181L 0.06 unknown(0) TCGA-VQ-A8PC-01 1 110280922 110280922 G A GSTM3 Missense_Mutation p.R86C 0.10 deleterious(0.01) probably_damaging(0.934) TCGA-VQ-A8PC-01 1 118539319 118539319 C T SPAG17 Silent p.L1608L 0.15 TCGA-VQ-A8PC-01 1 152283199 152283199 C T FLG Missense_Mutation p.R1388Q 0.05 possibly_damaging(0.553) TCGA-VQ-A8PC-01 1 158687131 158687131 A C OR6K3 Missense_Mutation p.L259V 0.30 tolerated(0.84) probably_damaging(0.986) TCGA-VQ-A8PC-01 1 166818612 166818612 G A POGK Missense_Mutation p.V266M 0.12 deleterious(0.01) probably_damaging(0.995) TCGA-VQ-A8PC-01 1 172001560 172001560 T G DNM3 Missense_Mutation p.V203G 0.15 deleterious(0) probably_damaging(0.988) TCGA-VQ-A8PC-01 1 180012316 180012316 T G CEP350 Silent p.T1496T 0.18 TCGA-VQ-A8PC-01 1 180914501 180914501 C T KIAA1614 Missense_Mutation p.A1117V 0.18 tolerated(0.29) benign(0.082) TCGA-VQ-A8PC-01 1 185878509 185878509 T C HMCN1 Missense_Mutation p.V221A 0.14 possibly_damaging(0.857) TCGA-VQ-A8PC-01 1 203036865 203036865 T A PPFIA4 Missense_Mutation p.N525K 0.17 deleterious(0) possibly_damaging(0.773) TCGA-VQ-A8PC-01 1 205273184 205273184 C T NUAK2 Silent p.P427P 0.17 TCGA-VQ-A8PC-01 1 228363137 228363137 C G IBA57 Missense_Mutation p.H332D 0.19 tolerated(0.15) benign(0.038) TCGA-VQ-A8PC-01 1 235827328 235827328 A G LYST Silent p.P3741P 0.05 TCGA-VQ-A8PC-01 1 33065863 33065863 C G ZBTB8A Missense_Mutation p.P390R 0.13 benign(0.07) TCGA-VQ-A8PC-01 1 38082239 38082239 T C RSPO1 Missense_Mutation p.D68G 0.14 tolerated(0.48) benign(0.029) TCGA-VQ-A8PC-01 1 42048500 42048500 T C HIVEP3 Missense_Mutation p.N657D 0.09 probably_damaging(0.993) TCGA-VQ-A8PC-01 1 53544311 53544311 G A PODN Missense_Mutation p.G425S 0.07 deleterious(0.04) probably_damaging(1) TCGA-VQ-A8PC-01 1 57173412 57173412 T G PRKAA2 3'UTR 0.20 TCGA-VQ-A8PC-01 1 71873171 71873171 A C NEGR1 Silent p.S341S 0.10 TCGA-VQ-A8PC-01 1 74663855 74663855 G A LRRIQ3 5'UTR 0.25 TCGA-VQ-A8PC-01 1 89848247 89848247 G A GBP6 Missense_Mutation p.D393N 0.20 tolerated(0.17) benign(0.005) TCGA-VQ-A8PC-01 1 95322997 95322997 C T SLC44A3 Silent p.F393F 0.24 TCGA-VQ-A8PC-01 20 43836250 43836250 A G SEMG1 Silent p.Q104Q 0.10 TCGA-VQ-A8PC-01 20 58349422 58349422 A G PHACTR3 Missense_Mutation p.N351D 0.06 tolerated(0.85) benign(0.001) TCGA-VQ-A8PC-01 20 61593976 61593976 G A SLC17A9 Silent p.G166G 0.18 TCGA-VQ-A8PC-01 21 10862949 10862949 A G IGHV1OR21-1 Missense_Mutation p.K82R 0.07 tolerated(0.07) benign(0.03) TCGA-VQ-A8PC-01 21 32526611 32526611 C T TIAM1 Missense_Mutation p.R1042H 0.12 deleterious(0.02) probably_damaging(0.994) TCGA-VQ-A8PC-01 21 45798891 45798891 C T TRPM2 Silent p.N342N 0.17 TCGA-VQ-A8PC-01 22 26997890 26997890 G A CRYBB1 Silent p.V176V 0.17 TCGA-VQ-A8PC-01 2 137852671 137852671 A C THSD7B Missense_Mutation p.E393D 0.25 tolerated(1) possibly_damaging(0.764) TCGA-VQ-A8PC-01 2 141739817 141739817 A T LRP1B Silent p.S933S 0.12 TCGA-VQ-A8PC-01 2 141777617 141777617 C A LRP1B Missense_Mutation p.W615L 0.09 possibly_damaging(0.637) TCGA-VQ-A8PC-01 2 178705064 178705064 T C PDE11A Missense_Mutation p.N472D 0.22 deleterious(0.02) probably_damaging(0.987) TCGA-VQ-A8PC-01 2 179596266 179596266 G A TTN Missense_Mutation p.R5743W 0.19 TCGA-VQ-A8PC-01 2 186671109 186671109 T G FSIP2 Silent p.S5781S 0.15 TCGA-VQ-A8PC-01 2 210642066 210642066 A G UNC80 Missense_Mutation p.N128S 0.18 benign(0) TCGA-VQ-A8PC-01 2 220380011 220380011 G A ASIC4 Missense_Mutation p.A316T 0.11 deleterious(0.02) possibly_damaging(0.534) TCGA-VQ-A8PC-01 2 220500155 220500155 C T SLC4A3 Nonsense_Mutation p.R664* 0.16 TCGA-VQ-A8PC-01 2 31588938 31588938 C T XDH Missense_Mutation p.R787Q 0.16 deleterious(0.01) probably_damaging(0.979) TCGA-VQ-A8PC-01 2 56611464 56611464 G T CCDC85A Nonsense_Mutation p.G546* 0.11 TCGA-VQ-A8PC-01 2 79348770 79348770 C T REG1A Silent p.Y49Y 0.15 TCGA-VQ-A8PC-01 3 112066633 112066633 T C CD200 Missense_Mutation p.L242P 0.09 tolerated(0.13) possibly_damaging(0.708) TCGA-VQ-A8PC-01 3 113118753 113118753 C T WDR52 Missense_Mutation p.M523I 0.08 tolerated(0.45) benign(0.001) TCGA-VQ-A8PC-01 3 126749250 126749250 C A PLXNA1 Missense_Mutation p.S1742R 0.11 deleterious(0) possibly_damaging(0.643) TCGA-VQ-A8PC-01 3 29925687 29925687 C - RBMS3 Frame_Shift_Del p.I261Yfs*17 0.09 TCGA-VQ-A8PC-01 3 384687 384687 A C CHL1 Missense_Mutation p.S234R 0.05 tolerated(0.13) benign(0.028) TCGA-VQ-A8PC-01 3 40557912 40557912 G A ZNF620 Missense_Mutation p.G276E 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-VQ-A8PC-01 3 4718465 4718465 A G ITPR1 Missense_Mutation p.K968E 0.15 deleterious(0.01) probably_damaging(0.993) TCGA-VQ-A8PC-01 3 49065896 49065897 - TG IMPDH2 Frame_Shift_Ins p.V73Qfs*9 0.12 TCGA-VQ-A8PC-01 3 8543661 8543661 A G LMCD1 Missense_Mutation p.K13E 0.19 tolerated(0.89) benign(0.001) TCGA-VQ-A8PC-01 3 96962916 96962916 A G EPHA6 Missense_Mutation p.K464R 0.13 tolerated(0.42) benign(0.407) TCGA-VQ-A8PC-01 3 99513388 99513388 T G COL8A1 Missense_Mutation p.L215V 0.14 tolerated(0.2) unknown(0) TCGA-VQ-A8PC-01 4 144136078 144136078 C T USP38 Silent p.D983D 0.15 TCGA-VQ-A8PC-01 4 68562410 68562410 C T UBA6 Silent p.L29L 0.21 TCGA-VQ-A8PC-01 5 159830326 159830326 G A SLU7 Missense_Mutation p.P576L 0.20 tolerated(0.29) benign(0.115) TCGA-VQ-A8PC-01 5 173035228 173035228 T G BOD1 3'UTR 0.15 TCGA-VQ-A8PC-01 5 32789903 32789903 A C NPR3 3'UTR 0.09 TCGA-VQ-A8PC-01 5 35876425 35876425 T G IL7R Missense_Mutation p.L406R 0.20 tolerated(0.3) possibly_damaging(0.824) TCGA-VQ-A8PC-01 5 63257459 63257459 C T HTR1A Missense_Mutation p.D30N 0.11 tolerated(0.33) benign(0.003) TCGA-VQ-A8PC-01 5 81606013 81606013 A C ATP6AP1L Missense_Mutation p.S40R 0.18 deleterious(0.01) benign(0.169) TCGA-VQ-A8PC-01 6 122743912 122743912 G C HSF2 Missense_Mutation p.E294Q 0.06 tolerated(0.28) benign(0.364) TCGA-VQ-A8PC-01 6 146673402 146673402 A C GRM1 Missense_Mutation p.E401D 0.10 tolerated(0.3) benign(0.065) TCGA-VQ-A8PC-01 6 27778004 27778004 G A HIST1H3H Silent p.E51E 0.14 TCGA-VQ-A8PC-01 6 33290765 33290765 C G DAXX 5'UTR 0.33 TCGA-VQ-A8PC-01 6 43267187 43267187 C T SLC22A7 Silent p.A153A 0.10 TCGA-VQ-A8PC-01 6 69665972 69665972 A C BAI3 Missense_Mutation p.N418H 0.24 deleterious(0.04) probably_damaging(0.999) TCGA-VQ-A8PC-01 6 81053616 81053616 G A BCKDHB 3'UTR 0.14 TCGA-VQ-A8PC-01 7 121652637 121652637 A G PTPRZ1 Silent p.E1179E 0.10 TCGA-VQ-A8PC-01 7 137801453 137801453 A C AKR1D1 3'UTR 0.09 TCGA-VQ-A8PC-01 7 21742359 21742359 A C DNAH11 Missense_Mutation p.K2078T 0.16 probably_damaging(1) TCGA-VQ-A8PC-01 7 5983076 5983076 G A RSPH10B Missense_Mutation p.T546M 0.10 deleterious(0) possibly_damaging(0.902) TCGA-VQ-A8PC-01 7 66489946 66489946 C A TYW1 Missense_Mutation p.S307R 0.22 tolerated(0.42) benign(0.006) TCGA-VQ-A8PC-01 7 92763870 92763870 T C SAMD9L Missense_Mutation p.Q472R 0.12 tolerated(0.16) benign(0.135) TCGA-VQ-A8PC-01 8 120252553 120252553 C T MAL2 Missense_Mutation p.A151V 0.19 deleterious(0.04) probably_damaging(0.916) TCGA-VQ-A8PC-01 8 139144996 139144996 A C FAM135B Missense_Mutation p.V1354G 0.13 deleterious(0) benign(0.104) TCGA-VQ-A8PC-01 8 17722085 17722085 A C FGL1 3'UTR 0.14 TCGA-VQ-A8PC-01 8 68536452 68536452 C T CPA6 Missense_Mutation p.E51K 0.09 tolerated(0.71) benign(0.006) TCGA-VQ-A8PC-01 8 82441815 82441815 C T FABP12 Missense_Mutation p.R35H 0.17 tolerated(0.06) benign(0.004) TCGA-VQ-A8PC-01 9 136901388 136901388 C T BRD3 Missense_Mutation p.E568K 0.10 tolerated(0.67) benign(0.351) TCGA-VQ-A8PC-01 9 139756656 139756656 G A EDF1 3'UTR 0.08 TCGA-VQ-A8PC-01 9 33917095 33917095 A C UBE2R2 Missense_Mutation p.K193Q 0.10 tolerated(0.07) benign(0.007) TCGA-VQ-A8PC-01 9 37719092 37719092 C T FRMPD1 Silent p.T145T 0.19 TCGA-VQ-A8PC-01 9 72783642 72783642 A C MAMDC2 Missense_Mutation p.S477R 0.08 deleterious(0.01) possibly_damaging(0.895) TCGA-VQ-A8PC-01 9 72783664 72783664 T C MAMDC2 Missense_Mutation p.V484A 0.08 tolerated(0.07) benign(0.024) TCGA-VQ-A8PC-01 9 84608724 84608724 A G SPATA31D1 Silent p.A1113A 0.13 TCGA-VQ-A8PC-01 9 87570279 87570279 C G NTRK2 Silent p.A673A 0.18 TCGA-VQ-A8PC-01 X 125298766 125298766 T A DCAF12L2 Missense_Mutation p.K381M 0.38 deleterious(0) possibly_damaging(0.841) TCGA-VQ-A8PC-01 X 142596888 142596888 T C SPANXN3 Missense_Mutation p.K61R 0.15 deleterious(0.02) benign(0.132) TCGA-VQ-A8PC-01 X 148059954 148059954 A G AFF2 Missense_Mutation p.K1180R 0.14 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PC-01 X 151092675 151092675 T G MAGEA4 Missense_Mutation p.V180G 0.13 deleterious(0.02) possibly_damaging(0.854) TCGA-VQ-A8PC-01 X 31089539 31089539 C T FTHL17 Missense_Mutation p.G178S 0.31 tolerated(0.39) benign(0.004) TCGA-VQ-A8PC-01 X 47001805 47001805 G T NDUFB11 Missense_Mutation p.L135I 0.14 deleterious(0.04) probably_damaging(0.999) TCGA-VQ-A8PC-01 X 76931736 76931736 T C ATRX Missense_Mutation p.N1265S 0.15 benign(0.005) TCGA-VQ-A8PC-01 X 83126554 83126554 T C CYLC1 Silent p.P51P 0.20 TCGA-VQ-A8PC-01 X 92926799 92926799 T A NAP1L3 Missense_Mutation p.K502M 0.28 deleterious_low_confidence(0) benign(0.007) TCGA-VQ-A8PC-01 X 99551748 99551748 C T PCDH19 Missense_Mutation p.A992T 0.10 tolerated(0.41) benign(0.002) TCGA-VQ-A8PD-01 10 114168183 114168183 A G ACSL5 Missense_Mutation p.I202V 0.04 tolerated(0.8) benign(0.004) TCGA-VQ-A8PD-01 10 29747488 29747488 C T SVIL Missense_Mutation p.V2145M 0.11 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8PD-01 10 37438609 37438609 T A ANKRD30A Splice_Site p.X468_splice 0.07 TCGA-VQ-A8PD-01 10 50574338 50574338 G A DRGX Silent p.S210S 0.06 TCGA-VQ-A8PD-01 10 54074685 54074685 G A DKK1 Silent p.P82P 0.19 TCGA-VQ-A8PD-01 10 68139094 68139094 T A CTNNA3 Missense_Mutation p.E516D 0.06 tolerated(0.08) unknown(0) TCGA-VQ-A8PD-01 11 46702918 46702918 T A ARHGAP1 Missense_Mutation p.N154I 0.09 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PD-01 11 55432680 55432680 T C OR4C6 Missense_Mutation p.L13P 0.06 deleterious_low_confidence(0) probably_damaging(0.959) TCGA-VQ-A8PD-01 11 55798831 55798831 G T OR5AS1 Nonsense_Mutation p.E313* 0.07 TCGA-VQ-A8PD-01 11 61196743 61196743 A G CPSF7 Missense_Mutation p.S32P 0.10 tolerated_low_confidence(0.33) unknown(0) TCGA-VQ-A8PD-01 11 66030464 66030464 C T KLC2 Missense_Mutation p.P237S 0.08 deleterious(0) probably_damaging(0.965) TCGA-VQ-A8PD-01 12 101763643 101763643 T G UTP20 Missense_Mutation p.F2177V 0.06 deleterious(0.03) possibly_damaging(0.573) TCGA-VQ-A8PD-01 12 108986019 108986019 C T TMEM119 Silent p.S47S 0.19 TCGA-VQ-A8PD-01 12 247574 247574 C T IQSEC3 Missense_Mutation p.R349W 0.16 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PD-01 12 46244355 46244355 C T ARID2 Nonsense_Mutation p.Q817* 0.13 TCGA-VQ-A8PD-01 12 53202094 53202094 T C KRT4 Missense_Mutation p.E370G 0.06 tolerated(0.24) possibly_damaging(0.828) TCGA-VQ-A8PD-01 12 53215714 53215714 G A KRT79 Missense_Mutation p.A517V 0.15 deleterious_low_confidence(0.05) benign(0.01) TCGA-VQ-A8PD-01 12 56481922 56481922 G A ERBB3 Missense_Mutation p.G284R 0.07 deleterious(0) probably_damaging(0.981) TCGA-VQ-A8PD-01 12 56487130 56487130 C T ERBB3 Missense_Mutation p.R426W 0.07 deleterious(0.01) possibly_damaging(0.85) TCGA-VQ-A8PD-01 12 7025618 7025618 G A ENO2 Silent p.T41T 0.17 TCGA-VQ-A8PD-01 13 42179394 42179394 C T VWA8 Missense_Mutation p.M1632I 0.07 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PD-01 13 47409732 47409732 G A HTR2A Missense_Mutation p.S219L 0.11 tolerated(0.08) possibly_damaging(0.764) TCGA-VQ-A8PD-01 14 60097272 60097272 C T RTN1 Intron 0.09 TCGA-VQ-A8PD-01 14 70634850 70634850 C T SLC8A3 Missense_Mutation p.R97H 0.08 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8PD-01 15 101833327 101833327 C G SNRPA1 Missense_Mutation p.D45H 0.11 deleterious(0) probably_damaging(1) TCGA-VQ-A8PD-01 15 22382692 22382692 T C OR4N4 Missense_Mutation p.S74P 0.09 deleterious(0.01) probably_damaging(0.939) TCGA-VQ-A8PD-01 15 50931674 50931674 C T TRPM7 Missense_Mutation p.G203R 0.06 deleterious(0) probably_damaging(1) TCGA-VQ-A8PD-01 15 93555619 93555619 G A CHD2 Missense_Mutation p.R1546Q 0.05 deleterious(0.03) probably_damaging(0.936) TCGA-VQ-A8PD-01 15 99478103 99478103 C T IGF1R Missense_Mutation p.R1003W 0.09 deleterious(0) probably_damaging(0.976) TCGA-VQ-A8PD-01 16 1261566 1261566 G A CACNA1H Missense_Mutation p.R1479H 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A8PD-01 16 15204591 15204591 G A RP11-1186N24.5 RNA 0.13 TCGA-VQ-A8PD-01 16 1614031 1614031 G A IFT140 Silent p.N678N 0.10 TCGA-VQ-A8PD-01 16 2017302 2017302 G A RNF151 Missense_Mutation p.A11T 0.07 tolerated(0.58) benign(0.002) TCGA-VQ-A8PD-01 16 24580752 24580752 C G RBBP6 Missense_Mutation p.T914R 0.10 tolerated_low_confidence(0.11) unknown(0) TCGA-VQ-A8PD-01 16 56309983 56309983 A G GNAO1 Missense_Mutation p.K101R 0.08 tolerated(0.42) benign(0) TCGA-VQ-A8PD-01 16 779132 779132 C T HAGHL Intron 0.12 TCGA-VQ-A8PD-01 16 81097409 81097409 G A C16orf46 Missense_Mutation p.T51M 0.14 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PD-01 17 18022835 18022835 G A MYO15A Missense_Mutation p.D241N 0.05 possibly_damaging(0.85) TCGA-VQ-A8PD-01 17 37868208 37868208 C T ERBB2 Missense_Mutation p.S310F 0.03 deleterious(0) probably_damaging(0.994) TCGA-VQ-A8PD-01 17 37879658 37879658 G A ERBB2 Missense_Mutation p.R678Q 0.23 tolerated(0.19) benign(0.022) TCGA-VQ-A8PD-01 17 58073425 58073425 G A RP11-178C3.2 RNA 0.08 TCGA-VQ-A8PD-01 17 68128325 68128325 A G KCNJ16 Missense_Mutation p.R33G 0.05 deleterious(0) benign(0.272) TCGA-VQ-A8PD-01 18 34647282 34647282 A C KIAA1328 Missense_Mutation p.S336R 0.11 tolerated(0.25) benign(0.004) TCGA-VQ-A8PD-01 18 61323101 61323101 G A SERPINB3 Silent p.R321R 0.10 TCGA-VQ-A8PD-01 19 22817127 22817127 T G ZNF492 5'UTR 0.50 TCGA-VQ-A8PD-01 19 36883800 36883800 T G ZFP82 Missense_Mutation p.K481T 0.10 deleterious(0.03) probably_damaging(1) TCGA-VQ-A8PD-01 19 38573601 38573601 G A SIPA1L3 Missense_Mutation p.A466T 0.08 tolerated(0.39) benign(0) TCGA-VQ-A8PD-01 1 152286262 152286262 C G FLG Missense_Mutation p.G367A 0.09 probably_damaging(0.999) TCGA-VQ-A8PD-01 1 161130996 161130996 G A USP21 Missense_Mutation p.R189Q 0.06 tolerated_low_confidence(0.19) benign(0.031) TCGA-VQ-A8PD-01 1 170967338 170967338 A G MROH9 Missense_Mutation p.S507G 0.12 deleterious(0.01) benign(0.002) TCGA-VQ-A8PD-01 1 176668660 176668660 C T PAPPA2 Silent p.R1057R 0.07 TCGA-VQ-A8PD-01 1 247031060 247031060 C A AHCTF1 Missense_Mutation p.V1057L 0.10 deleterious(0.01) possibly_damaging(0.674) TCGA-VQ-A8PD-01 1 247835715 247835715 A G OR13G1 Missense_Mutation p.L210P 0.11 deleterious(0.01) probably_damaging(0.989) TCGA-VQ-A8PD-01 1 78329632 78329632 C T FAM73A Silent p.S476S 0.09 TCGA-VQ-A8PD-01 20 3805043 3805043 G A AP5S1 3'UTR 0.14 TCGA-VQ-A8PD-01 20 39832810 39832810 G T ZHX3 Missense_Mutation p.N249K 0.15 tolerated(0.91) benign(0) TCGA-VQ-A8PD-01 20 47701844 47701844 G A CSE1L Silent p.P548P 0.14 TCGA-VQ-A8PD-01 20 590477 590477 G A TCF15 Silent p.D135D 0.31 TCGA-VQ-A8PD-01 22 21385534 21385534 C T SLC7A4 Missense_Mutation p.V190M 0.16 deleterious(0.01) possibly_damaging(0.865) TCGA-VQ-A8PD-01 22 44681489 44681489 G A KIAA1644 Nonsense_Mutation p.R140* 0.10 TCGA-VQ-A8PD-01 22 44893188 44893188 G T LDOC1L Silent p.I83I 0.10 TCGA-VQ-A8PD-01 2 100906772 100906772 C T LONRF2 Missense_Mutation p.R623H 0.05 tolerated(0.24) benign(0.011) TCGA-VQ-A8PD-01 2 125262060 125262060 G A CNTNAP5 Silent p.L417L 0.07 TCGA-VQ-A8PD-01 2 125405468 125405468 C T CNTNAP5 Silent p.D669D 0.15 TCGA-VQ-A8PD-01 2 162895510 162895510 C T DPP4 Silent p.R147R 0.08 TCGA-VQ-A8PD-01 2 177036967 177036967 C T HOXD3 Nonsense_Mutation p.R422* 0.17 TCGA-VQ-A8PD-01 2 179424786 179424786 T A TTN Missense_Mutation p.K28691N 0.09 TCGA-VQ-A8PD-01 2 179425013 179425013 G A TTN Missense_Mutation p.R28616W 0.07 TCGA-VQ-A8PD-01 2 179594104 179594104 T C TTN Missense_Mutation p.K6260R 0.09 TCGA-VQ-A8PD-01 2 29092771 29092771 G A TRMT61B Missense_Mutation p.L125F 0.11 tolerated(0.06) benign(0.005) TCGA-VQ-A8PD-01 2 87017464 87017464 C T CD8A Silent p.P130P 0.06 TCGA-VQ-A8PD-01 2 89416981 89416981 C T IGKV1-17 Missense_Mutation p.R68H 0.07 deleterious(0.02) benign(0.005) TCGA-VQ-A8PD-01 3 114069514 114069514 G T ZBTB20 Missense_Mutation p.P471T 0.17 tolerated(0.08) probably_damaging(0.981) TCGA-VQ-A8PD-01 3 147108957 147108957 C T ZIC4 Silent p.S305S 0.09 TCGA-VQ-A8PD-01 3 14799032 14799032 C T C3orf20 Missense_Mutation p.R699C 0.06 deleterious(0.02) benign(0.139) TCGA-VQ-A8PD-01 3 151148110 151148110 G A MED12L Silent p.Q2109Q 0.07 TCGA-VQ-A8PD-01 3 35785382 35785382 C A ARPP21 Missense_Mutation p.Q654K 0.10 deleterious(0.01) possibly_damaging(0.533) TCGA-VQ-A8PD-01 3 47164465 47164465 C T SETD2 Missense_Mutation p.R554H 0.09 deleterious_low_confidence(0.04) benign(0.003) TCGA-VQ-A8PD-01 3 53909996 53909996 C G ACTR8 Missense_Mutation p.G297A 0.09 tolerated(0.13) probably_damaging(1) TCGA-VQ-A8PD-01 3 6903507 6903507 C T GRM7 Silent p.F144F 0.08 TCGA-VQ-A8PD-01 4 79394643 79394643 G A FRAS1 Missense_Mutation p.R2525H 0.06 benign(0) TCGA-VQ-A8PD-01 5 140228014 140228014 G A PCDHA9 5'UTR 0.19 TCGA-VQ-A8PD-01 6 28554380 28554380 C A SCAND3 Missense_Mutation p.A39S 0.07 tolerated_low_confidence(0.48) benign(0) TCGA-VQ-A8PD-01 6 64421987 64421987 G A PHF3 Silent p.E1501E 0.07 TCGA-VQ-A8PD-01 7 100352935 100352935 C T ZAN Missense_Mutation p.R1071W 0.06 unknown(0) TCGA-VQ-A8PD-01 7 131833391 131833391 T A PLXNA4 Missense_Mutation p.S1559C 0.12 deleterious(0.01) possibly_damaging(0.796) TCGA-VQ-A8PD-01 7 143055982 143055982 C T FAM131B Missense_Mutation p.R135H 0.07 deleterious(0.01) probably_damaging(0.949) TCGA-VQ-A8PD-01 7 149482795 149482795 C T SSPO RNA 0.12 TCGA-VQ-A8PD-01 7 18875157 18875157 T G HDAC9 Missense_Mutation p.L845R 0.24 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PD-01 7 27211756 27211756 G A HOXA10 Missense_Mutation p.T332M 0.12 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PD-01 7 44046970 44046970 C T SPDYE1 Missense_Mutation p.R246C 0.08 deleterious(0.01) probably_damaging(0.939) TCGA-VQ-A8PD-01 7 57522167 57522167 G T ZNF716 Missense_Mutation p.G14V 0.15 deleterious(0.03) possibly_damaging(0.9) TCGA-VQ-A8PD-01 7 73111957 73111957 C T WBSCR22 Missense_Mutation p.R259W 0.11 deleterious(0.01) probably_damaging(0.972) TCGA-VQ-A8PD-01 8 135612729 135612729 T G ZFAT Missense_Mutation p.T809P 0.09 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8PD-01 8 26627756 26627756 C T ADRA1A Intron 0.05 TCGA-VQ-A8PD-01 8 48689487 48689487 C T PRKDC Missense_Mutation p.A4033T 0.10 benign(0.002) TCGA-VQ-A8PD-01 8 52287254 52287254 C T PXDNL Missense_Mutation p.A1199T 0.14 deleterious(0.03) benign(0.358) TCGA-VQ-A8PD-01 8 70617297 70617297 G C SLCO5A1 Missense_Mutation p.L531V 0.06 tolerated(0.07) possibly_damaging(0.475) TCGA-VQ-A8PD-01 8 77767221 77767221 G A ZFHX4 Silent p.S2688S 0.07 TCGA-VQ-A8PD-01 9 36170733 36170733 C A CCIN Missense_Mutation p.P412T 0.05 deleterious(0.03) probably_damaging(0.999) TCGA-VQ-A8PD-01 9 97535436 97535436 C T C9orf3 Missense_Mutation p.T317M 0.04 tolerated(0.09) possibly_damaging(0.86) TCGA-VQ-A8PD-01 X 127185866 127185866 A C ACTRT1 Missense_Mutation p.L107R 0.14 deleterious(0) probably_damaging(0.973) TCGA-VQ-A8PD-01 X 140008380 140008380 G T MIR320D2 RNA 0.18 TCGA-VQ-A8PD-01 Y 16835135 16835135 G A NLGN4Y Missense_Mutation p.R204H 0.18 deleterious(0) probably_damaging(0.988) TCGA-VQ-A8PE-01 10 108439088 108439088 T C SORCS1 Missense_Mutation p.N556D 0.12 deleterious(0) possibly_damaging(0.908) TCGA-VQ-A8PE-01 10 108536427 108536427 C A SORCS1 Missense_Mutation p.E250D 0.07 tolerated(0.29) possibly_damaging(0.536) TCGA-VQ-A8PE-01 10 55912914 55912914 C T PCDH15 Missense_Mutation p.R577Q 0.38 tolerated(0.46) benign(0.025) TCGA-VQ-A8PE-01 10 61028353 61028353 C T FAM13C Missense_Mutation p.R301Q 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-VQ-A8PE-01 10 72468396 72468396 G A ADAMTS14 Silent p.L244L 0.16 TCGA-VQ-A8PE-01 10 72509617 72509617 C G ADAMTS14 Missense_Mutation p.P771R 0.21 tolerated(0.25) probably_damaging(0.936) TCGA-VQ-A8PE-01 11 114465479 114465479 C A NXPE4 Translation_Start_Site p.M1? 0.12 tolerated_low_confidence(0.11) possibly_damaging(0.827) TCGA-VQ-A8PE-01 11 118428468 118428469 - CT IFT46 Frame_Shift_Ins p.S61Rfs*15 0.18 TCGA-VQ-A8PE-01 11 119031791 119031791 G A ABCG4 Missense_Mutation p.R639H 0.27 deleterious(0) probably_damaging(0.953) TCGA-VQ-A8PE-01 11 122650400 122650400 A T UBASH3B Missense_Mutation p.T200S 0.21 deleterious(0.03) benign(0.031) TCGA-VQ-A8PE-01 11 18361172 18361172 T C GTF2H1 Missense_Mutation p.I192T 0.11 tolerated(0.1) benign(0.206) TCGA-VQ-A8PE-01 11 31327321 31327321 G T DCDC1 Missense_Mutation p.L199M 0.16 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8PE-01 11 47698917 47698917 G A AGBL2 Nonsense_Mutation p.R685* 0.08 TCGA-VQ-A8PE-01 11 55418592 55418592 C A OR4S2 Nonsense_Mutation p.Y71* 0.19 TCGA-VQ-A8PE-01 11 61048588 61048588 G A VWCE Missense_Mutation p.P303S 0.23 tolerated(0.2) benign(0.009) TCGA-VQ-A8PE-01 11 64037708 64037708 G A BAD Silent p.G160G 0.21 TCGA-VQ-A8PE-01 11 6630832 6630832 C T ILK Missense_Mutation p.P273L 0.11 deleterious(0.03) possibly_damaging(0.705) TCGA-VQ-A8PE-01 11 78369474 78369474 C T TENM4 Missense_Mutation p.V2647I 0.19 tolerated(0.07) possibly_damaging(0.756) TCGA-VQ-A8PE-01 12 123810118 123810118 C A SBNO1 Missense_Mutation p.G635V 0.18 deleterious(0) probably_damaging(1) TCGA-VQ-A8PE-01 12 1993439 1993439 G A CACNA2D4 Missense_Mutation p.R441C 0.20 deleterious(0.05) benign(0.013) TCGA-VQ-A8PE-01 12 49398368 49398368 C T PRKAG1 Silent p.L162L 0.04 TCGA-VQ-A8PE-01 12 54960869 54960869 A T PDE1B Silent p.T75T 0.31 TCGA-VQ-A8PE-01 12 63954354 63954354 C T DPY19L2 Missense_Mutation p.A739T 0.12 tolerated(0.07) benign(0.021) TCGA-VQ-A8PE-01 12 64017868 64017868 G T DPY19L2 Missense_Mutation p.S302Y 0.13 deleterious(0) probably_damaging(0.976) TCGA-VQ-A8PE-01 12 66935660 66935660 C T GRIP1 Silent p.S69S 0.19 TCGA-VQ-A8PE-01 12 85277680 85277680 C A SLC6A15 Missense_Mutation p.M238I 0.18 tolerated(1) benign(0.003) TCGA-VQ-A8PE-01 13 100037499 100037499 G T UBAC2 Missense_Mutation p.E315D 0.73 tolerated(0.2) benign(0.184) TCGA-VQ-A8PE-01 13 111213750 111213750 G A RAB20 Silent p.G39G 0.43 TCGA-VQ-A8PE-01 13 26163784 26163784 C T ATP8A2 Nonsense_Mutation p.R720* 0.14 TCGA-VQ-A8PE-01 13 27259947 27259947 G A WASF3 Missense_Mutation p.D492N 0.09 deleterious(0) unknown(0) TCGA-VQ-A8PE-01 13 32759257 32759257 G C FRY Missense_Mutation p.M1097I 0.16 deleterious(0.05) benign(0.068) TCGA-VQ-A8PE-01 13 35692561 35692561 G A NBEA Silent p.S731S 0.50 TCGA-VQ-A8PE-01 13 36223864 36223864 C - NBEA Frame_Shift_Del p.P2594Lfs*6 0.28 TCGA-VQ-A8PE-01 13 92345469 92345469 A T GPC5 Silent p.A118A 0.70 TCGA-VQ-A8PE-01 14 20529107 20529107 C T OR4L1 Missense_Mutation p.R302W 0.55 tolerated(0.24) benign(0.002) TCGA-VQ-A8PE-01 14 59793352 59793352 G C DAAM1 Missense_Mutation p.K433N 0.45 deleterious(0.01) unknown(0) TCGA-VQ-A8PE-01 14 77844392 77844392 C G SAMD15 Missense_Mutation p.Q211E 0.15 tolerated(0.17) possibly_damaging(0.496) TCGA-VQ-A8PE-01 15 25219561 25219561 A C SNRPN 5'UTR 0.21 TCGA-VQ-A8PE-01 15 77087632 77087632 G A SCAPER Missense_Mutation p.S254L 0.09 tolerated(0.37) benign(0.008) TCGA-VQ-A8PE-01 15 83434004 83434004 G A FSD2 Silent p.T578T 0.42 TCGA-VQ-A8PE-01 16 30123665 30123665 C T GDPD3 Missense_Mutation p.V149I 0.24 tolerated(1) benign(0.217) TCGA-VQ-A8PE-01 16 58201157 58201157 A C CSNK2A2 Missense_Mutation p.I227S 0.20 deleterious(0) possibly_damaging(0.889) TCGA-VQ-A8PE-01 16 70010487 70010487 T C PDXDC2P RNA 0.20 TCGA-VQ-A8PE-01 16 89724598 89724598 G A SPATA33 Intron 0.27 TCGA-VQ-A8PE-01 17 25753494 25753494 C A TBC1D3P5 RNA 0.18 TCGA-VQ-A8PE-01 17 36288251 36288251 G C TBC1D3F Missense_Mutation p.V113L 0.12 tolerated(1) probably_damaging(0.999) TCGA-VQ-A8PE-01 17 37681103 37681103 C T CDK12 Missense_Mutation p.P1091L 0.28 benign(0.392) TCGA-VQ-A8PE-01 17 38928323 38928323 G A KRT26 Nonsense_Mutation p.R15* 0.34 TCGA-VQ-A8PE-01 17 40557081 40557081 G A PTRF Missense_Mutation p.T266M 0.30 deleterious(0) probably_damaging(0.994) TCGA-VQ-A8PE-01 17 42476441 42476441 T A GPATCH8 Nonsense_Mutation p.R1002* 0.13 TCGA-VQ-A8PE-01 17 43322438 43322438 C A FMNL1 Missense_Mutation p.F897L 0.16 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PE-01 17 4637850 4637850 C G CXCL16 Intron 0.33 TCGA-VQ-A8PE-01 17 58256609 58256609 G A USP32 3'UTR 0.09 TCGA-VQ-A8PE-01 17 7578263 7578263 G A TP53 Nonsense_Mutation p.R196* 0.57 TCGA-VQ-A8PE-01 18 25585874 25585874 G A CDH2 Silent p.D262D 0.27 TCGA-VQ-A8PE-01 18 44470870 44470870 G A PIAS2 Nonsense_Mutation p.R58* 0.07 TCGA-VQ-A8PE-01 18 60570267 60570267 C G PHLPP1 Missense_Mutation p.R839G 0.09 deleterious(0) probably_damaging(0.983) TCGA-VQ-A8PE-01 19 17330523 17330523 G T USE1 Missense_Mutation p.Q227H 0.29 deleterious(0.01) possibly_damaging(0.516) TCGA-VQ-A8PE-01 19 18368167 18368167 G A KIAA1683 Silent p.S1309S 0.17 TCGA-VQ-A8PE-01 19 19655211 19655211 G A CILP2 Silent p.A619A 0.18 TCGA-VQ-A8PE-01 19 36370054 36370054 G A APLP1 Missense_Mutation p.V598I 0.62 tolerated(0.13) benign(0.012) TCGA-VQ-A8PE-01 19 37643387 37643387 C T ZNF585A Missense_Mutation p.G417R 0.06 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8PE-01 19 38655374 38655374 G A SIPA1L3 Missense_Mutation p.G1346R 0.21 tolerated(0.13) possibly_damaging(0.831) TCGA-VQ-A8PE-01 19 52272018 52272018 C A FPR2 Missense_Mutation p.T36N 0.10 deleterious(0) probably_damaging(0.931) TCGA-VQ-A8PE-01 19 52496987 52496987 G A ZNF615 Nonsense_Mutation p.R459* 0.47 TCGA-VQ-A8PE-01 19 57642046 57642046 A C USP29 Missense_Mutation p.K668T 0.18 tolerated(0.12) possibly_damaging(0.639) TCGA-VQ-A8PE-01 19 59061584 59061584 A G TRIM28 Missense_Mutation p.Y755C 0.32 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PE-01 19 9073647 9073647 G A MUC16 Missense_Mutation p.T4600I 0.14 unknown(0) TCGA-VQ-A8PE-01 19 9583910 9583910 G A ZNF560 Silent p.V61V 0.24 TCGA-VQ-A8PE-01 1 103355033 103355033 G C COL11A1 Missense_Mutation p.S1481C 0.05 unknown(0) TCGA-VQ-A8PE-01 1 10479548 10479548 C T PGD Silent p.S428S 0.57 TCGA-VQ-A8PE-01 1 11182172 11182172 T C MTOR Missense_Mutation p.Y2225C 0.21 deleterious(0) probably_damaging(0.944) TCGA-VQ-A8PE-01 1 12907828 12907828 G A HNRNPCL1 Silent p.Y105Y 0.12 TCGA-VQ-A8PE-01 1 153029034 153029034 A G SPRR2A Missense_Mutation p.S60P 0.39 tolerated_low_confidence(1) unknown(0) TCGA-VQ-A8PE-01 1 153910210 153910210 G C DENND4B Missense_Mutation p.P699A 0.08 tolerated(1) benign(0.083) TCGA-VQ-A8PE-01 1 169823714 169823714 C A SCYL3 Missense_Mutation p.K622N 0.08 tolerated(0.14) benign(0.013) TCGA-VQ-A8PE-01 1 186277646 186277646 C T PRG4 Missense_Mutation p.T932I 0.47 unknown(0) TCGA-VQ-A8PE-01 1 216692636 216692638 ATA - ESRRG In_Frame_Del p.Y342del 0.51 TCGA-VQ-A8PE-01 1 41474373 41474373 G A CTPS1 Missense_Mutation p.R479H 0.06 deleterious(0) probably_damaging(0.95) TCGA-VQ-A8PE-01 1 62713316 62713316 A T KANK4 Missense_Mutation p.V904D 0.12 deleterious(0) probably_damaging(0.942) TCGA-VQ-A8PE-01 1 87029391 87029391 G C CLCA4 Missense_Mutation p.D166H 0.07 deleterious(0) probably_damaging(0.979) TCGA-VQ-A8PE-01 1 89270534 89270534 C G PKN2 Silent p.T477T 0.26 TCGA-VQ-A8PE-01 1 89525062 89525062 C T GBP1 Silent p.L122L 0.08 TCGA-VQ-A8PE-01 20 13797768 13797768 G C NDUFAF5 Missense_Mutation p.R317T 0.04 deleterious(0.02) benign(0.091) TCGA-VQ-A8PE-01 20 3211642 3211642 C T SLC4A11 Missense_Mutation p.A412T 0.20 deleterious(0.01) possibly_damaging(0.538) TCGA-VQ-A8PE-01 20 36642206 36642206 C G TTI1 Missense_Mutation p.D5H 0.12 deleterious(0.01) probably_damaging(0.981) TCGA-VQ-A8PE-01 20 44815287 44815287 A G CDH22 Missense_Mutation p.Y535H 0.14 tolerated(0.19) possibly_damaging(0.771) TCGA-VQ-A8PE-01 20 48439644 48439644 T - SLC9A8 Frame_Shift_Del p.F86Sfs*11 0.08 TCGA-VQ-A8PE-01 20 5283050 5283050 C T PROKR2 Missense_Mutation p.R264H 0.06 deleterious(0.01) possibly_damaging(0.556) TCGA-VQ-A8PE-01 22 19163689 19163689 T C SLC25A1 Missense_Mutation p.Y297C 0.10 deleterious(0) probably_damaging(0.949) TCGA-VQ-A8PE-01 22 22712477 22712477 C T IGLV1-47 Missense_Mutation p.R74W 0.21 deleterious_low_confidence(0) possibly_damaging(0.821) TCGA-VQ-A8PE-01 2 137814476 137814476 C T THSD7B Missense_Mutation p.P209L 0.28 deleterious(0.03) probably_damaging(0.994) TCGA-VQ-A8PE-01 2 138400112 138400112 C T THSD7B Missense_Mutation p.P1288L 0.12 deleterious(0.04) unknown(0) TCGA-VQ-A8PE-01 2 141473667 141473667 G A LRP1B Silent p.N1966N 0.08 TCGA-VQ-A8PE-01 2 14774300 14774300 A G FAM84A Missense_Mutation p.E66G 0.36 tolerated(0.27) benign(0) TCGA-VQ-A8PE-01 2 166187845 166187845 G C SCN2A Missense_Mutation p.E719Q 0.13 deleterious(0.04) possibly_damaging(0.747) TCGA-VQ-A8PE-01 2 17773404 17773404 G A VSNL1 Silent p.E21E 0.28 TCGA-VQ-A8PE-01 2 220500085 220500085 G A SLC4A3 Silent p.P640P 0.28 TCGA-VQ-A8PE-01 2 239141129 239141129 G A AC016757.3 5'Flank 0.19 TCGA-VQ-A8PE-01 2 27278796 27278796 C T AGBL5 Silent p.N385N 0.33 TCGA-VQ-A8PE-01 2 28802542 28802542 G A PLB1 Missense_Mutation p.G512S 0.34 tolerated(0.07) possibly_damaging(0.477) TCGA-VQ-A8PE-01 2 85576705 85576705 C T RETSAT Splice_Site p.X267_splice 0.28 TCGA-VQ-A8PE-01 3 113377491 113377491 T G KIAA2018 Missense_Mutation p.K1013T 0.17 probably_damaging(0.999) TCGA-VQ-A8PE-01 3 113377643 113377643 T G KIAA2018 Silent p.S962S 0.13 TCGA-VQ-A8PE-01 3 142681926 142681926 G A PAQR9 Missense_Mutation p.L85F 0.31 tolerated(0.19) benign(0.103) TCGA-VQ-A8PE-01 3 142762048 142762048 T A U2SURP Missense_Mutation p.M825K 0.50 tolerated(0.31) benign(0.002) TCGA-VQ-A8PE-01 3 180666230 180666230 A G FXR1 Silent p.K122K 0.12 TCGA-VQ-A8PE-01 3 185414441 185414441 C G IGF2BP2 Missense_Mutation p.G100A 0.19 tolerated(0.08) possibly_damaging(0.855) TCGA-VQ-A8PE-01 3 49756654 49756654 G A AMIGO3 Missense_Mutation p.A82V 0.25 deleterious(0.05) benign(0.295) TCGA-VQ-A8PE-01 3 51992878 51992878 G C PCBP4 Missense_Mutation p.A284G 0.29 deleterious(0) benign(0.16) TCGA-VQ-A8PE-01 3 52539106 52539106 G A STAB1 Missense_Mutation p.V489M 0.26 tolerated(0.08) benign(0.15) TCGA-VQ-A8PE-01 3 69097302 69097302 G A TMF1 Missense_Mutation p.S185L 0.05 tolerated_low_confidence(0.21) benign(0.001) TCGA-VQ-A8PE-01 4 134084218 134084218 G A PCDH10 Missense_Mutation p.D962N 0.18 tolerated(0.39) possibly_damaging(0.772) TCGA-VQ-A8PE-01 4 147561240 147561240 G A POU4F2 Silent p.T170T 0.36 TCGA-VQ-A8PE-01 4 162459419 162459419 C T FSTL5 Missense_Mutation p.R404H 0.28 tolerated(0.16) probably_damaging(0.996) TCGA-VQ-A8PE-01 4 39512167 39512167 G A UGDH Silent p.L157L 0.08 TCGA-VQ-A8PE-01 4 46066500 46066500 A T GABRG1 Missense_Mutation p.F195I 0.17 deleterious(0) probably_damaging(0.994) TCGA-VQ-A8PE-01 4 77660209 77660209 C T SHROOM3 Missense_Mutation p.L295F 0.13 deleterious(0.04) possibly_damaging(0.87) TCGA-VQ-A8PE-01 5 112174187 112174187 A G APC Missense_Mutation p.S966G 0.19 probably_damaging(0.995) TCGA-VQ-A8PE-01 5 140307533 140307533 C T PCDHAC1 Silent p.D352D 0.07 TCGA-VQ-A8PE-01 5 149927838 149927838 C A NDST1 Missense_Mutation p.T735N 0.22 deleterious(0.04) benign(0.237) TCGA-VQ-A8PE-01 5 176931353 176931353 G A DOK3 Silent p.N374N 0.36 TCGA-VQ-A8PE-01 5 177546827 177546827 C T N4BP3 Silent p.A81A 0.06 TCGA-VQ-A8PE-01 6 111696101 111696101 G A REV3L Missense_Mutation p.P1153S 0.04 tolerated_low_confidence(0.26) benign(0.015) TCGA-VQ-A8PE-01 6 144109947 144109947 G A PHACTR2 Missense_Mutation p.R582Q 0.18 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8PE-01 6 15663053 15663053 G A DTNBP1 Silent p.F16F 0.27 TCGA-VQ-A8PE-01 6 161173983 161173983 C G PLG Missense_Mutation p.Q775E 0.06 tolerated(0.12) possibly_damaging(0.651) TCGA-VQ-A8PE-01 6 161653136 161653136 A G AGPAT4 Missense_Mutation p.L37P 0.29 tolerated(0.1) benign(0.001) TCGA-VQ-A8PE-01 6 7580988 7580988 C G DSP Missense_Mutation p.T1522R 0.08 benign(0.171) TCGA-VQ-A8PE-01 6 86329066 86329066 G A SYNCRIP Nonsense_Mutation p.Q360* 0.25 TCGA-VQ-A8PE-01 6 87969690 87969690 C T ZNF292 Nonsense_Mutation p.R2115* 0.10 TCGA-VQ-A8PE-01 7 107558430 107558430 C T DLD Missense_Mutation p.A433V 0.36 tolerated(0.31) benign(0.067) TCGA-VQ-A8PE-01 7 124387291 124387291 G T GPR37 Missense_Mutation p.S377Y 0.13 deleterious(0.05) probably_damaging(0.961) TCGA-VQ-A8PE-01 7 128846031 128846031 G A SMO Missense_Mutation p.V321M 0.29 deleterious(0) probably_damaging(0.994) TCGA-VQ-A8PE-01 7 129769339 129769339 C G KLHDC10 Missense_Mutation p.L348V 0.31 deleterious(0) probably_damaging(0.993) TCGA-VQ-A8PE-01 7 75145530 75145530 T C Y_RNA 5'Flank 0.11 TCGA-VQ-A8PE-01 7 92147523 92147523 C T PEX1 Missense_Mutation p.R135Q 0.33 deleterious(0) probably_damaging(1) TCGA-VQ-A8PE-01 8 116599813 116599813 G A TRPS1 Silent p.Y705Y 0.09 TCGA-VQ-A8PE-01 8 121237326 121237326 G T COL14A1 Splice_Site p.X580_splice 0.11 TCGA-VQ-A8PE-01 8 131896989 131896989 T C ADCY8 Missense_Mutation p.R644G 0.22 tolerated(0.23) possibly_damaging(0.675) TCGA-VQ-A8PE-01 8 144407589 144407589 G A TOP1MT Missense_Mutation p.R200C 0.20 deleterious(0.02) benign(0.381) TCGA-VQ-A8PE-01 8 144695748 144695748 G C TSTA3 Missense_Mutation p.I252M 0.30 deleterious(0) possibly_damaging(0.863) TCGA-VQ-A8PE-01 8 145617194 145617194 C T ADCK5 Silent p.F356F 0.24 TCGA-VQ-A8PE-01 8 27668491 27668492 - TCATCATCG PBK In_Frame_Ins p.D254_D256dup 0.32 TCGA-VQ-A8PE-01 8 39775661 39775661 C T IDO1 Missense_Mutation p.R80C 0.46 deleterious(0) possibly_damaging(0.855) TCGA-VQ-A8PE-01 8 65537035 65537035 A C CYP7B1 Missense_Mutation p.L62V 0.18 deleterious(0.04) benign(0.057) TCGA-VQ-A8PE-01 8 77619911 77619911 T C ZFHX4 Silent p.A907A 0.16 TCGA-VQ-A8PE-01 8 77776510 77776510 C A ZFHX4 Nonsense_Mutation p.C3520* 0.18 TCGA-VQ-A8PE-01 8 82751863 82751863 T G SNX16 Missense_Mutation p.E120A 0.12 deleterious(0.01) probably_damaging(0.954) TCGA-VQ-A8PE-01 9 106885429 106885429 G A SMC2 Missense_Mutation p.E725K 0.35 deleterious(0.02) benign(0.377) TCGA-VQ-A8PE-01 9 132569559 132569559 C A TOR1B Silent p.I186I 0.24 TCGA-VQ-A8PE-01 9 35685726 35685726 C T TPM2 Missense_Mutation p.E98K 0.25 deleterious(0.02) probably_damaging(0.997) TCGA-VQ-A8PE-01 9 35700200 35700200 A T TLN1 Silent p.L2216L 0.15 TCGA-VQ-A8PE-01 9 40704212 40704212 G A SPATA31A3 Silent p.L623L 0.28 TCGA-VQ-A8PE-01 X 123540242 123540243 - TA TENM1 Frame_Shift_Ins p.D1694* 0.26 TCGA-VQ-A8PE-01 X 16887282 16887282 A C RBBP7 Missense_Mutation p.N70K 0.21 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8PE-01 X 591565 591565 C T SHOX 5'UTR 0.12 TCGA-VQ-A8PE-01 Y 14924932 14924932 C G USP9Y Silent p.L1518L 0.21 TCGA-VQ-A8PE-01 Y 6736491 6736491 C T AMELY Missense_Mutation p.G54S 0.75 deleterious(0.01) probably_damaging(0.995) TCGA-VQ-A8PF-01 10 101829628 101829628 T A CPN1 Splice_Site p.X141_splice 0.08 TCGA-VQ-A8PF-01 10 116075381 116075381 G A AFAP1L2 Missense_Mutation p.R184C 0.18 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8PF-01 10 134752146 134752146 G A TTC40 Silent p.N161N 0.20 TCGA-VQ-A8PF-01 10 27702277 27702277 G A PTCHD3 Silent p.F301F 0.15 TCGA-VQ-A8PF-01 10 28151448 28151448 A C ARMC4 Missense_Mutation p.I905S 0.11 deleterious(0) possibly_damaging(0.796) TCGA-VQ-A8PF-01 10 55566804 55566804 C T PCDH15 Silent p.Q1527Q 0.24 TCGA-VQ-A8PF-01 10 5945101 5945101 T G FBXO18 Silent p.G91G 0.06 TCGA-VQ-A8PF-01 10 90428512 90428512 A C LIPF Missense_Mutation p.S151R 0.12 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8PF-01 11 107535877 107535877 C T ELMOD1 Missense_Mutation p.A320V 0.15 tolerated(0.65) probably_damaging(0.997) TCGA-VQ-A8PF-01 11 123481019 123481019 G A GRAMD1B Missense_Mutation p.R488H 0.06 tolerated(0.57) probably_damaging(0.997) TCGA-VQ-A8PF-01 11 4869773 4869773 G A OR51S1 Silent p.F222F 0.13 TCGA-VQ-A8PF-01 11 51411724 51411724 A G OR4A5 Silent p.T224T 0.13 TCGA-VQ-A8PF-01 11 61511519 61511519 C T DAGLA Missense_Mutation p.A896V 0.10 tolerated_low_confidence(0.06) benign(0.017) TCGA-VQ-A8PF-01 11 63273878 63273878 G A LGALS12 Missense_Mutation p.S5N 0.14 deleterious_low_confidence(0.02) benign(0.383) TCGA-VQ-A8PF-01 12 108029146 108029146 C T BTBD11 Missense_Mutation p.R906W 0.08 deleterious(0.02) probably_damaging(0.987) TCGA-VQ-A8PF-01 12 18544114 18544114 G A PIK3C2G Missense_Mutation p.S644N 0.16 tolerated(0.33) benign(0.002) TCGA-VQ-A8PF-01 12 51847356 51847356 G A SLC4A8 Silent p.G149G 0.07 TCGA-VQ-A8PF-01 12 56491679 56491679 C T ERBB3 Silent p.D857D 0.22 TCGA-VQ-A8PF-01 12 57581137 57581137 A G LRP1 Missense_Mutation p.H2310R 0.17 probably_damaging(0.996) TCGA-VQ-A8PF-01 12 58016874 58016874 C T SLC26A10 Missense_Mutation p.T336M 0.04 deleterious(0) probably_damaging(0.988) TCGA-VQ-A8PF-01 12 9346801 9346801 G A PZP Missense_Mutation p.P376S 0.20 tolerated(0.22) possibly_damaging(0.903) TCGA-VQ-A8PF-01 13 50594408 50594408 T G KCNRG Missense_Mutation p.L213V 0.07 deleterious(0.01) benign(0.351) TCGA-VQ-A8PF-01 13 92560201 92560201 C T GPC5 Missense_Mutation p.R431C 0.18 deleterious(0) benign(0.167) TCGA-VQ-A8PF-01 13 99374137 99374137 A G SLC15A1 Missense_Mutation p.L129P 0.22 deleterious(0) probably_damaging(1) TCGA-VQ-A8PF-01 14 100376628 100376628 G A EML1 Missense_Mutation p.G449D 0.21 deleterious(0) probably_damaging(0.992) TCGA-VQ-A8PF-01 14 102483264 102483265 - T DYNC1H1 Frame_Shift_Ins p.L2593Ffs*22 0.13 TCGA-VQ-A8PF-01 14 105414641 105414641 C A AHNAK2 Missense_Mutation p.D2383Y 0.06 benign(0.173) TCGA-VQ-A8PF-01 14 20344777 20344777 C A OR4K2 Silent p.A117A 0.14 TCGA-VQ-A8PF-01 14 51224461 51224461 T C NIN Missense_Mutation p.Q1096R 0.25 tolerated(0.19) possibly_damaging(0.574) TCGA-VQ-A8PF-01 14 52535489 52535489 A G NID2 Missense_Mutation p.L75P 0.12 deleterious(0) probably_damaging(0.91) TCGA-VQ-A8PF-01 14 62249011 62249011 A C SNAPC1 Missense_Mutation p.D291A 0.06 tolerated(0.16) benign(0.164) TCGA-VQ-A8PF-01 14 79175752 79175752 T A NRXN3 Missense_Mutation p.S99T 0.26 deleterious(0.03) possibly_damaging(0.819) TCGA-VQ-A8PF-01 15 54786895 54786895 C A UNC13C Missense_Mutation p.L1675I 0.20 tolerated_low_confidence(0.07) benign(0.063) TCGA-VQ-A8PF-01 15 57743702 57743702 G A CGNL1 Missense_Mutation p.C603Y 0.06 tolerated(0.44) benign(0.007) TCGA-VQ-A8PF-01 15 66257358 66257358 C T MEGF11 Missense_Mutation p.E334K 0.25 deleterious(0.04) benign(0.005) TCGA-VQ-A8PF-01 15 93567653 93567653 T G CHD2 Missense_Mutation p.N1735K 0.06 deleterious_low_confidence(0.03) benign(0.091) TCGA-VQ-A8PF-01 16 22137526 22137526 G A VWA3A Silent p.A520A 0.22 TCGA-VQ-A8PF-01 16 27523220 27523220 T C GTF3C1 Missense_Mutation p.T326A 0.09 deleterious(0.01) probably_damaging(0.993) TCGA-VQ-A8PF-01 16 2816330 2816330 G A SRRM2 Missense_Mutation p.R1934H 0.09 unknown(0) TCGA-VQ-A8PF-01 16 68057117 68057117 T A DDX28 5'UTR 0.21 TCGA-VQ-A8PF-01 16 84270636 84270636 G C KCNG4 Missense_Mutation p.I152M 0.14 deleterious(0.01) possibly_damaging(0.892) TCGA-VQ-A8PF-01 17 11896099 11896099 C T ZNF18 Silent p.A16A 0.08 TCGA-VQ-A8PF-01 17 1840131 1840131 G A RTN4RL1 Missense_Mutation p.H329Y 0.12 deleterious(0.04) possibly_damaging(0.52) TCGA-VQ-A8PF-01 17 1959628 1959628 T C HIC1 Silent p.L9L 0.28 TCGA-VQ-A8PF-01 17 27239898 27239898 C T PHF12 Missense_Mutation p.R564Q 0.09 tolerated(0.12) possibly_damaging(0.886) TCGA-VQ-A8PF-01 17 35913760 35913760 C T SYNRG Missense_Mutation p.D689N 0.10 tolerated_low_confidence(0.07) probably_damaging(0.998) TCGA-VQ-A8PF-01 17 67150050 67150050 A T ABCA10 Missense_Mutation p.L1296H 0.07 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PF-01 19 16678899 16678899 C T SLC35E1 Missense_Mutation p.V192I 0.08 tolerated(1) benign(0.006) TCGA-VQ-A8PF-01 19 2811698 2811698 C T THOP1 Missense_Mutation p.T625M 0.07 deleterious(0.04) probably_damaging(0.996) TCGA-VQ-A8PF-01 19 34839997 34839997 G A KIAA0355 Missense_Mutation p.G922R 0.10 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-VQ-A8PF-01 19 35801000 35801000 C T MAG Silent p.R485R 0.15 TCGA-VQ-A8PF-01 19 36050909 36050909 G A ATP4A Missense_Mutation p.A285V 0.06 deleterious(0.03) probably_damaging(0.997) TCGA-VQ-A8PF-01 19 38996466 38996466 G A RYR1 Nonsense_Mutation p.W2807* 0.11 TCGA-VQ-A8PF-01 19 42566653 42566653 G A GRIK5 Silent p.C165C 0.08 TCGA-VQ-A8PF-01 19 54245827 54245827 G C MIR520H RNA 0.24 TCGA-VQ-A8PF-01 19 56369169 56369169 G A NLRP4 Missense_Mutation p.R137H 0.09 tolerated(0.58) benign(0.001) TCGA-VQ-A8PF-01 19 5699211 5699211 G A LONP1 Silent p.F504F 0.32 TCGA-VQ-A8PF-01 1 111863156 111863156 A G CHIA 3'UTR 0.20 TCGA-VQ-A8PF-01 1 152191565 152191565 G A HRNR Missense_Mutation p.T847M 0.08 unknown(0) TCGA-VQ-A8PF-01 1 153924061 153924061 T C CRTC2 Missense_Mutation p.Q360R 0.06 deleterious(0.03) possibly_damaging(0.885) TCGA-VQ-A8PF-01 1 156928884 156928884 G A ARHGEF11 Nonsense_Mutation p.Q445* 0.26 TCGA-VQ-A8PF-01 1 158549634 158549634 T G OR10X1 Missense_Mutation p.K19T 0.09 tolerated(0.05) benign(0.075) TCGA-VQ-A8PF-01 1 17952451 17952451 C T ARHGEF10L Nonsense_Mutation p.R440* 0.06 TCGA-VQ-A8PF-01 1 27105550 27105550 C T ARID1A Nonsense_Mutation p.R1721* 0.43 TCGA-VQ-A8PF-01 1 60520949 60520949 T C C1orf87 Missense_Mutation p.E90G 0.06 tolerated(0.17) benign(0) TCGA-VQ-A8PF-01 1 9063485 9063485 G T SLC2A7 Silent p.G471G 0.15 TCGA-VQ-A8PF-01 1 979010 979010 G A AGRN Missense_Mutation p.V566M 0.09 deleterious(0.01) possibly_damaging(0.867) TCGA-VQ-A8PF-01 20 49576551 49576551 A C MOCS3 Missense_Mutation p.E391A 0.03 tolerated(0.15) benign(0.002) TCGA-VQ-A8PF-01 20 52773963 52773963 T G CYP24A1 Silent p.R466R 0.06 TCGA-VQ-A8PF-01 21 34717604 34717604 G A IFNAR1 Silent p.Q242Q 0.28 TCGA-VQ-A8PF-01 22 20796611 20796611 G A KLHL22 Missense_Mutation p.R552C 0.10 deleterious(0) possibly_damaging(0.757) TCGA-VQ-A8PF-01 22 32992675 32992675 G A SYN3 Silent p.H253H 0.28 TCGA-VQ-A8PF-01 22 38121335 38121335 A - TRIOBP Frame_Shift_Del p.S925Lfs*80 0.15 TCGA-VQ-A8PF-01 22 50470513 50470513 C T TTLL8 Missense_Mutation p.V453I 0.08 tolerated(1) benign(0.037) TCGA-VQ-A8PF-01 22 51159594 51159594 C T SHANK3 Silent p.A1127A 0.18 TCGA-VQ-A8PF-01 2 101644877 101644877 T G TBC1D8 Missense_Mutation p.K732T 0.09 tolerated(1) benign(0.174) TCGA-VQ-A8PF-01 2 125204485 125204485 G A CNTNAP5 Missense_Mutation p.E297K 0.09 deleterious(0.02) benign(0.311) TCGA-VQ-A8PF-01 2 128390856 128390856 C T MYO7B Missense_Mutation p.P1784L 0.21 deleterious(0) benign(0.151) TCGA-VQ-A8PF-01 2 130877909 130877909 C T POTEF Silent p.K60K 0.10 TCGA-VQ-A8PF-01 2 152471013 152471013 A G NEB Missense_Mutation p.I3793T 0.10 benign(0.258) TCGA-VQ-A8PF-01 2 152581387 152581387 G A NEB Missense_Mutation p.S164L 0.13 probably_damaging(0.998) TCGA-VQ-A8PF-01 2 161223793 161223793 G A RBMS1 Missense_Mutation p.T62M 0.15 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PF-01 2 170494114 170494114 T G PPIG 3'UTR 0.14 TCGA-VQ-A8PF-01 2 211336680 211336680 T C LANCL1 Intron 0.22 TCGA-VQ-A8PF-01 2 215798899 215798899 G C ABCA12 Missense_Mutation p.T2528R 0.07 deleterious(0.01) possibly_damaging(0.623) TCGA-VQ-A8PF-01 2 220085510 220085510 C T ATG9A Missense_Mutation p.E825K 0.04 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-VQ-A8PF-01 2 232952276 232952276 A G DIS3L2 Missense_Mutation p.H149R 0.21 tolerated(0.65) benign(0.001) TCGA-VQ-A8PF-01 2 233898836 233898836 A C NEU2 Missense_Mutation p.Q71P 0.05 tolerated(0.11) benign(0.063) TCGA-VQ-A8PF-01 2 238303686 238303686 C T COL6A3 Missense_Mutation p.G85R 0.08 probably_damaging(1) TCGA-VQ-A8PF-01 2 29498013 29498013 T A ALK Nonsense_Mutation p.K665* 0.11 TCGA-VQ-A8PF-01 2 70906045 70906045 T G ADD2 Missense_Mutation p.T392P 0.06 tolerated(1) benign(0.372) TCGA-VQ-A8PF-01 2 73680802 73680802 C T ALMS1 Missense_Mutation p.A2382V 0.19 benign(0.332) TCGA-VQ-A8PF-01 2 79254932 79254932 G A REG3G Splice_Site p.X112_splice 0.11 TCGA-VQ-A8PF-01 3 130293225 130293225 G A COL6A6 Missense_Mutation p.V1135M 0.19 deleterious(0.04) possibly_damaging(0.463) TCGA-VQ-A8PF-01 3 13393385 13393385 G A NUP210 Silent p.V943V 0.22 TCGA-VQ-A8PF-01 3 141164637 141164637 C T ZBTB38 Missense_Mutation p.T1136I 0.08 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8PF-01 3 178916876 178916876 G A PIK3CA Missense_Mutation p.R88Q 0.12 tolerated(0.06) probably_damaging(0.998) TCGA-VQ-A8PF-01 3 178916930 178916930 G T PIK3CA Missense_Mutation p.G106V 0.10 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8PF-01 3 186331110 186331110 G C AHSG Missense_Mutation p.L60F 0.12 deleterious(0) possibly_damaging(0.857) TCGA-VQ-A8PF-01 3 186917955 186917955 G A RTP1 3'UTR 0.22 TCGA-VQ-A8PF-01 3 188123949 188123949 A T LPP Missense_Mutation p.E14V 0.06 deleterious(0.01) possibly_damaging(0.886) TCGA-VQ-A8PF-01 3 195925735 195925735 A C ZDHHC19 Missense_Mutation p.L233R 0.06 deleterious(0.05) probably_damaging(0.938) TCGA-VQ-A8PF-01 3 4856839 4856839 G T ITPR1 Missense_Mutation p.A2587S 0.08 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8PF-01 3 9406917 9406917 A T THUMPD3 Missense_Mutation p.E55D 0.21 tolerated(0.06) probably_damaging(0.994) TCGA-VQ-A8PF-01 3 98109945 98109945 G T OR5K3 Missense_Mutation p.A146S 0.05 tolerated(0.56) benign(0.009) TCGA-VQ-A8PF-01 4 170913438 170913438 G A MFAP3L Silent p.S107S 0.23 TCGA-VQ-A8PF-01 4 187173008 187173008 C A KLKB1 Missense_Mutation p.D379E 0.07 tolerated(0.43) benign(0.014) TCGA-VQ-A8PF-01 4 83742203 83742203 A C SEC31A Missense_Mutation p.L1157R 0.07 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PF-01 4 870384 870384 T G GAK Missense_Mutation p.K663T 0.11 deleterious(0) probably_damaging(0.968) TCGA-VQ-A8PF-01 5 137498956 137498956 T G BRD8 Missense_Mutation p.Q650H 0.05 deleterious(0.03) possibly_damaging(0.805) TCGA-VQ-A8PF-01 5 137523046 137523046 C T KIF20A Silent p.L873L 0.07 TCGA-VQ-A8PF-01 5 140011775 140011775 A C CD14 Missense_Mutation p.V265G 0.10 tolerated(0.07) benign(0) TCGA-VQ-A8PF-01 5 142689689 142689689 A T NR3C1 Missense_Mutation p.C482S 0.22 deleterious(0) probably_damaging(1) TCGA-VQ-A8PF-01 5 41807453 41807453 T G OXCT1 Missense_Mutation p.K274Q 0.05 tolerated(0.19) benign(0.001) TCGA-VQ-A8PF-01 5 79029456 79029456 A G CMYA5 Missense_Mutation p.E1623G 0.09 benign(0.188) TCGA-VQ-A8PF-01 5 86628433 86628437 TTACT - RASA1 Frame_Shift_Del p.L269Pfs*11 0.19 TCGA-VQ-A8PF-01 5 889146 889146 G A BRD9 Missense_Mutation p.T199M 0.06 deleterious(0.01) probably_damaging(0.98) TCGA-VQ-A8PF-01 6 106978161 106978161 G A AIM1 Silent p.K1155K 0.23 TCGA-VQ-A8PF-01 6 116757764 116757764 G T DSE Missense_Mutation p.Q711H 0.16 tolerated_low_confidence(0.28) benign(0.001) TCGA-VQ-A8PF-01 6 122779789 122779789 C T SERINC1 Missense_Mutation p.C26Y 0.16 deleterious(0.01) possibly_damaging(0.85) TCGA-VQ-A8PF-01 6 136429941 136429941 G A PDE7B Missense_Mutation p.R52H 0.15 deleterious(0.04) benign(0.005) TCGA-VQ-A8PF-01 6 27101174 27101174 C T HIST1H2AG Silent p.V108V 0.10 TCGA-VQ-A8PF-01 6 90457092 90457092 G A MDN1 Missense_Mutation p.P1287L 0.07 benign(0.003) TCGA-VQ-A8PF-01 7 103294586 103294586 C T RELN Missense_Mutation p.R503K 0.10 tolerated(0.88) benign(0.003) TCGA-VQ-A8PF-01 7 150715732 150715732 G A ATG9B Missense_Mutation p.L565F 0.31 deleterious(0.04) benign(0.117) TCGA-VQ-A8PF-01 7 15725596 15725596 G A MEOX2 Silent p.C144C 0.09 TCGA-VQ-A8PF-01 7 27203314 27203314 G C HOXA9 Missense_Mutation p.L243V 0.05 deleterious(0) probably_damaging(0.987) TCGA-VQ-A8PF-01 7 34818157 34818157 C T NPSR1 Nonsense_Mutation p.R122* 0.51 TCGA-VQ-A8PF-01 7 72209505 72209505 G A TYW1B 3'UTR 0.26 TCGA-VQ-A8PF-01 7 83591057 83591057 C A SEMA3A Missense_Mutation p.C649F 0.24 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8PF-01 8 104898169 104898169 T G RIMS2 Missense_Mutation p.L448V 0.07 tolerated_low_confidence(0.12) benign(0.007) TCGA-VQ-A8PF-01 8 124664400 124664400 T C KLHL38 Missense_Mutation p.K256R 0.08 tolerated(1) benign(0.001) TCGA-VQ-A8PF-01 8 126085430 126085430 G A KIAA0196 Missense_Mutation p.A372V 0.10 tolerated(0.09) benign(0.111) TCGA-VQ-A8PF-01 8 22019299 22019299 C A SFTPC 5'UTR 0.28 TCGA-VQ-A8PF-01 8 27255281 27255281 A C PTK2B Missense_Mutation p.K60N 0.05 deleterious(0) probably_damaging(0.917) TCGA-VQ-A8PF-01 9 113509924 113509924 T C MUSK Missense_Mutation p.S253P 0.04 tolerated(0.18) benign(0.199) TCGA-VQ-A8PF-01 X 39914699 39914700 - A BCOR Frame_Shift_Ins p.D1555* 0.09 TCGA-VQ-A8PF-01 X 71425042 71425042 T G ERCC6L Missense_Mutation p.K1192T 0.19 tolerated(0.39) benign(0.035) TCGA-VQ-A8PF-01 X 79939611 79939611 T G BRWD3 Missense_Mutation p.E1377D 0.12 deleterious(0.05) possibly_damaging(0.733) TCGA-VQ-A8PH-01 10 120095910 120095910 T A FAM204A Silent p.L6L 0.42 TCGA-VQ-A8PH-01 10 128841336 128841336 C T DOCK1 Silent p.I682I 0.41 TCGA-VQ-A8PH-01 10 134997425 134997425 G A KNDC1 Missense_Mutation p.R186H 0.19 tolerated(0.2) possibly_damaging(0.908) TCGA-VQ-A8PH-01 10 27687385 27687385 C T PTCHD3 Silent p.E714E 0.45 TCGA-VQ-A8PH-01 10 27688058 27688058 A T PTCHD3 Missense_Mutation p.I490N 0.45 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PH-01 10 43622103 43622103 G C RET Silent p.L1040L 0.48 TCGA-VQ-A8PH-01 10 56129025 56129025 T G PCDH15 Missense_Mutation p.N110T 0.53 tolerated(0.06) benign(0.165) TCGA-VQ-A8PH-01 10 63188723 63188723 A G TMEM26 Missense_Mutation p.L189P 0.12 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PH-01 10 70332569 70332569 T G TET1 Silent p.V158V 0.21 TCGA-VQ-A8PH-01 10 73591604 73591604 T A PSAP Missense_Mutation p.E83V 0.22 deleterious(0) possibly_damaging(0.718) TCGA-VQ-A8PH-01 10 7745425 7745425 T A ITIH2 Missense_Mutation p.C10S 0.15 deleterious(0.03) benign(0.071) TCGA-VQ-A8PH-01 10 78844416 78844416 T A KCNMA1 Missense_Mutation p.E501V 0.11 deleterious(0) probably_damaging(1) TCGA-VQ-A8PH-01 10 78846286 78846286 T A KCNMA1 Missense_Mutation p.Q467L 0.47 tolerated(0.26) possibly_damaging(0.524) TCGA-VQ-A8PH-01 10 84738833 84738833 G A NRG3 Missense_Mutation p.E514K 0.15 deleterious(0.01) possibly_damaging(0.803) TCGA-VQ-A8PH-01 11 101325773 101325773 G A TRPC6 Silent p.F848F 0.50 TCGA-VQ-A8PH-01 11 116745896 116745896 T A SIK3 Missense_Mutation p.T411S 0.24 deleterious_low_confidence(0.02) probably_damaging(0.989) TCGA-VQ-A8PH-01 11 18231821 18231821 G C RP11-113D6.10 3'UTR 0.30 TCGA-VQ-A8PH-01 11 30601970 30601970 T A MPPED2 5'UTR 0.26 TCGA-VQ-A8PH-01 11 31451893 31451893 G - DNAJC24 Frame_Shift_Del p.S132Tfs*2 0.20 TCGA-VQ-A8PH-01 11 33308999 33308999 T G HIPK3 Missense_Mutation p.S347A 0.43 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8PH-01 11 36472841 36472841 G T PRR5L Missense_Mutation p.G223V 0.22 deleterious(0) possibly_damaging(0.732) TCGA-VQ-A8PH-01 11 3744585 3744585 T A NUP98 Missense_Mutation p.I650F 0.69 deleterious(0) probably_damaging(0.933) TCGA-VQ-A8PH-01 11 44636870 44636870 A T CD82 Missense_Mutation p.N129Y 0.32 deleterious(0.01) possibly_damaging(0.726) TCGA-VQ-A8PH-01 11 4945152 4945152 G A OR51G1 Missense_Mutation p.P140S 0.36 tolerated(0.81) benign(0.001) TCGA-VQ-A8PH-01 11 5153350 5153350 T A OR52A5 Missense_Mutation p.T175S 0.37 tolerated(0.14) benign(0.05) TCGA-VQ-A8PH-01 11 59282789 59282789 T A OR4D9 Missense_Mutation p.I135N 0.19 deleterious(0) possibly_damaging(0.675) TCGA-VQ-A8PH-01 11 59630188 59630188 A T TCN1 Missense_Mutation p.D89E 0.19 tolerated(0.89) benign(0.016) TCGA-VQ-A8PH-01 11 61563141 61563141 G A FEN1 Missense_Mutation p.R103Q 0.42 deleterious(0.01) possibly_damaging(0.477) TCGA-VQ-A8PH-01 11 62373662 62373662 G T EML3 Missense_Mutation p.A510D 0.11 tolerated(0.1) benign(0.097) TCGA-VQ-A8PH-01 11 64338602 64338602 C T SLC22A11 3'UTR 0.50 TCGA-VQ-A8PH-01 11 65266257 65266257 A T MALAT1 RNA 0.10 TCGA-VQ-A8PH-01 11 6898077 6898077 T A OR10A4 Missense_Mutation p.L67M 0.43 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A8PH-01 11 7022766 7022766 T C ZNF214 Missense_Mutation p.K50E 0.18 tolerated(0.87) benign(0.027) TCGA-VQ-A8PH-01 11 71249552 71249552 C - KRTAP5-8 Frame_Shift_Del p.C152Afs*63 0.13 TCGA-VQ-A8PH-01 11 8161432 8161432 A G RIC3 Intron 0.55 TCGA-VQ-A8PH-01 12 111801218 111801218 T A FAM109A Missense_Mutation p.E18V 0.36 deleterious(0) probably_damaging(0.985) TCGA-VQ-A8PH-01 12 113307833 113307833 G A RPH3A Missense_Mutation p.R262Q 0.12 tolerated(0.26) benign(0.003) TCGA-VQ-A8PH-01 12 119419820 119419820 T A SRRM4 Splice_Site p.X44_splice 0.37 TCGA-VQ-A8PH-01 12 125398232 125398232 T A UBC Missense_Mutation p.K29M 0.34 deleterious(0) benign(0.286) TCGA-VQ-A8PH-01 12 40153789 40153789 C A SLC2A13 3'UTR 0.35 TCGA-VQ-A8PH-01 12 42491711 42491711 C T GXYLT1 Splice_Site p.X330_splice 0.25 TCGA-VQ-A8PH-01 12 42858605 42858605 G A PRICKLE1 Missense_Mutation p.H411Y 0.29 tolerated(0.08) probably_damaging(0.998) TCGA-VQ-A8PH-01 12 52818308 52818308 G T KRT75 Missense_Mutation p.T550K 0.14 tolerated_low_confidence(1) unknown(0) TCGA-VQ-A8PH-01 12 57111407 57111407 T A NACA Intron 0.17 TCGA-VQ-A8PH-01 12 58024046 58024046 C G B4GALNT1 Missense_Mutation p.E201Q 0.15 tolerated(0.07) benign(0.147) TCGA-VQ-A8PH-01 12 58139657 58139657 G C TSPAN31 Missense_Mutation p.V65L 0.06 tolerated(0.17) benign(0.157) TCGA-VQ-A8PH-01 12 62798039 62798039 C G USP15 Missense_Mutation p.L944V 0.32 tolerated(0.57) benign(0.085) TCGA-VQ-A8PH-01 12 6424256 6424256 G A PLEKHG6 Missense_Mutation p.R127Q 0.17 tolerated(0.38) benign(0.003) TCGA-VQ-A8PH-01 12 6703754 6703754 G A CHD4 Silent p.P728P 0.24 TCGA-VQ-A8PH-01 12 70704798 70704799 - T CNOT2 Splice_Site p.X57_splice 0.19 TCGA-VQ-A8PH-01 12 78513239 78513239 G A NAV3 Missense_Mutation p.S1088N 0.07 deleterious(0.01) probably_damaging(0.998) TCGA-VQ-A8PH-01 14 20528698 20528698 C T OR4L1 Silent p.N165N 0.39 TCGA-VQ-A8PH-01 14 38724242 38724242 T A CLEC14A Missense_Mutation p.E329V 0.40 deleterious_low_confidence(0) possibly_damaging(0.837) TCGA-VQ-A8PH-01 14 38724243 38724243 C A CLEC14A Nonsense_Mutation p.E329* 0.41 TCGA-VQ-A8PH-01 14 45414744 45414744 T - KLHL28 Frame_Shift_Del p.S130Afs*61 0.34 TCGA-VQ-A8PH-01 14 50190598 50190598 A T KLHDC1 Silent p.I137I 0.60 TCGA-VQ-A8PH-01 15 24921553 24921553 T A NPAP1 Missense_Mutation p.L180H 0.36 tolerated(0.55) benign(0.194) TCGA-VQ-A8PH-01 15 28427613 28427613 T A HERC2 Silent p.I2957I 0.18 TCGA-VQ-A8PH-01 15 28474439 28474439 C G HERC2 Missense_Mutation p.R1725P 0.30 possibly_damaging(0.67) TCGA-VQ-A8PH-01 15 31334325 31334325 A T TRPM1 Missense_Mutation p.V656E 0.13 deleterious(0) possibly_damaging(0.866) TCGA-VQ-A8PH-01 15 35085732 35085732 T A ACTC1 Silent p.V56V 0.25 TCGA-VQ-A8PH-01 15 49431800 49431800 A C COPS2 Missense_Mutation p.I99M 0.24 deleterious(0.02) benign(0.04) TCGA-VQ-A8PH-01 15 60850442 60850442 A G RORA Silent p.F67F 0.27 TCGA-VQ-A8PH-01 15 63862711 63862711 A T USP3 Missense_Mutation p.N281Y 0.37 tolerated(0.28) possibly_damaging(0.819) TCGA-VQ-A8PH-01 15 72154912 72154912 T C MYO9A Missense_Mutation p.Y2007C 0.42 deleterious(0) possibly_damaging(0.907) TCGA-VQ-A8PH-01 15 89073979 89073979 A C DET1 Missense_Mutation p.F331V 0.33 deleterious(0.01) benign(0.388) TCGA-VQ-A8PH-01 15 90185453 90185453 G A KIF7 Missense_Mutation p.A792V 0.23 tolerated(0.07) benign(0.035) TCGA-VQ-A8PH-01 15 96877532 96877532 G C NR2F2 Missense_Mutation p.V224L 0.06 deleterious(0.02) benign(0.273) TCGA-VQ-A8PH-01 16 111955 111955 G A RHBDF1 Missense_Mutation p.P350L 0.43 tolerated(0.18) benign(0.001) TCGA-VQ-A8PH-01 16 22157658 22157658 G A VWA3A Silent p.L944L 0.56 TCGA-VQ-A8PH-01 16 27549574 27549574 A G GTF3C1 Missense_Mutation p.C179R 0.11 deleterious(0.02) probably_damaging(1) TCGA-VQ-A8PH-01 16 3187495 3187495 C T ZNF213 Missense_Mutation p.R72C 0.48 deleterious(0) probably_damaging(0.984) TCGA-VQ-A8PH-01 16 67063628 67063628 A T CBFB Splice_Site p.X27_splice 0.48 TCGA-VQ-A8PH-01 16 73126711 73126711 A G HCCAT5 RNA 0.44 TCGA-VQ-A8PH-01 16 74942834 74942834 C T WDR59 Missense_Mutation p.A562T 0.57 tolerated(0.71) benign(0.001) TCGA-VQ-A8PH-01 16 9857312 9857312 G A GRIN2A Silent p.S1363S 0.47 TCGA-VQ-A8PH-01 17 1183577 1183577 T A TUSC5 Nonsense_Mutation p.Y94* 0.40 TCGA-VQ-A8PH-01 17 12906840 12906840 T A ELAC2 Silent p.P345P 0.48 TCGA-VQ-A8PH-01 17 37863248 37863248 A T ERBB2 Missense_Mutation p.T27S 0.21 tolerated(0.71) benign(0.398) TCGA-VQ-A8PH-01 17 40914831 40914831 T A RAMP2 Silent p.L163L 0.59 TCGA-VQ-A8PH-01 17 53016370 53016370 A T TOM1L1 Silent p.T373T 0.53 TCGA-VQ-A8PH-01 17 56492821 56492821 T A RNF43 Nonsense_Mutation p.R40* 0.41 TCGA-VQ-A8PH-01 17 71189246 71189246 T C COG1 Missense_Mutation p.L13P 0.55 tolerated_low_confidence(0.24) benign(0.026) TCGA-VQ-A8PH-01 17 7577506 7577506 C A TP53 Missense_Mutation p.D259Y 0.50 deleterious(0.02) probably_damaging(0.996) TCGA-VQ-A8PH-01 18 21399960 21399960 A G LAMA3 Missense_Mutation p.Q768R 0.20 possibly_damaging(0.78) TCGA-VQ-A8PH-01 18 22010283 22010283 T C IMPACT Intron 0.28 TCGA-VQ-A8PH-01 18 29122738 29122738 G A DSG2 Missense_Mutation p.A753T 0.60 tolerated(0.1) benign(0.125) TCGA-VQ-A8PH-01 18 32949330 32949330 T A ZNF396 Missense_Mutation p.K286M 0.18 deleterious(0) probably_damaging(0.966) TCGA-VQ-A8PH-01 18 32949332 32949332 T G ZNF396 Silent p.A285A 0.18 TCGA-VQ-A8PH-01 18 46448214 46448214 T A SMAD7 Missense_Mutation p.K270M 0.28 deleterious(0) probably_damaging(0.925) TCGA-VQ-A8PH-01 18 56363679 56363679 A T MALT1 Missense_Mutation p.H153L 0.15 tolerated(0.69) benign(0.083) TCGA-VQ-A8PH-01 18 7036020 7036020 C A LAMA1 Missense_Mutation p.S602I 0.53 tolerated(0.3) possibly_damaging(0.707) TCGA-VQ-A8PH-01 19 15166805 15166805 C T CASP14 Missense_Mutation p.R212W 0.40 deleterious(0) possibly_damaging(0.849) TCGA-VQ-A8PH-01 19 33878240 33878240 C G PEPD 3'UTR 0.56 TCGA-VQ-A8PH-01 19 35793397 35793397 G C MAG Missense_Mutation p.E339D 0.30 deleterious(0.01) probably_damaging(0.983) TCGA-VQ-A8PH-01 19 38126754 38126754 G A ZFP30 Nonsense_Mutation p.R230* 0.04 TCGA-VQ-A8PH-01 19 38810855 38810855 C G KCNK6 Missense_Mutation p.P89A 0.24 tolerated(0.2) benign(0.022) TCGA-VQ-A8PH-01 19 39001360 39001360 C A RYR1 Missense_Mutation p.P3021T 0.33 benign(0.018) TCGA-VQ-A8PH-01 19 39096337 39096337 C T MAP4K1 Missense_Mutation p.G412R 0.36 tolerated(0.21) benign(0.34) TCGA-VQ-A8PH-01 19 44890689 44890689 C G ZNF285 Missense_Mutation p.R573P 0.61 tolerated(0.32) benign(0.048) TCGA-VQ-A8PH-01 19 44934522 44934529 CCTTCCCA - ZNF229 Frame_Shift_Del p.W143Sfs*9 0.19 TCGA-VQ-A8PH-01 19 46998059 46998059 C T PNMAL2 Missense_Mutation p.A222T 0.65 deleterious(0.01) probably_damaging(0.966) TCGA-VQ-A8PH-01 19 4817470 4817470 C A TICAM1 Missense_Mutation p.G307V 0.53 tolerated(0.83) benign(0) TCGA-VQ-A8PH-01 19 48994470 48994470 G A LMTK3 Missense_Mutation p.L1450F 0.47 unknown(0) TCGA-VQ-A8PH-01 19 51532524 51532524 G T KLK12 Intron 0.12 TCGA-VQ-A8PH-01 19 56490798 56490800 CCA - NLRP8 In_Frame_Del p.A972_M973delinsV 0.09 TCGA-VQ-A8PH-01 1 103354277 103354277 A T COL11A1 Splice_Site p.X1518_splice 0.12 TCGA-VQ-A8PH-01 1 103548412 103548412 T A COL11A1 Nonsense_Mutation p.R75* 0.43 TCGA-VQ-A8PH-01 1 110145948 110145948 A T GNAT2 3'UTR 0.53 TCGA-VQ-A8PH-01 1 1117808 1117808 T A TTLL10 Missense_Mutation p.F300I 0.10 deleterious(0) probably_damaging(0.98) TCGA-VQ-A8PH-01 1 113000033 113000033 A T CTTNBP2NL Nonstop_Mutation p.*640Lext*9 0.19 TCGA-VQ-A8PH-01 1 117632732 117632732 A T TTF2 Missense_Mutation p.N800Y 0.44 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PH-01 1 147380409 147380409 C T GJA8 Silent p.R109R 0.30 TCGA-VQ-A8PH-01 1 151798420 151798420 C T RORC Intron 0.33 TCGA-VQ-A8PH-01 1 155030369 155030370 TG - ADAM15 Frame_Shift_Del p.C487* 0.16 TCGA-VQ-A8PH-01 1 160054309 160054309 G C KCNJ9 Missense_Mutation p.Q163H 0.36 deleterious(0) probably_damaging(1) TCGA-VQ-A8PH-01 1 16767229 16767229 G C NECAP2 5'Flank 0.50 TCGA-VQ-A8PH-01 1 18149689 18149689 C G ACTL8 Silent p.T62T 0.47 TCGA-VQ-A8PH-01 1 183518406 183518406 G A SMG7 Missense_Mutation p.G940R 0.15 deleterious_low_confidence(0.04) probably_damaging(0.909) TCGA-VQ-A8PH-01 1 186088926 186088926 C A HMCN1 Missense_Mutation p.N4002K 0.14 probably_damaging(0.996) TCGA-VQ-A8PH-01 1 19559155 19559155 G C EMC1 Missense_Mutation p.P582R 0.22 deleterious(0.01) probably_damaging(0.988) TCGA-VQ-A8PH-01 1 197059160 197059160 G C ASPM Missense_Mutation p.A3295G 0.32 deleterious(0) probably_damaging(0.991) TCGA-VQ-A8PH-01 1 215753294 215753294 A T KCTD3 Missense_Mutation p.H193L 0.08 deleterious(0.01) benign(0.293) TCGA-VQ-A8PH-01 1 215775534 215775534 C A KCTD3 Missense_Mutation p.P377T 0.30 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PH-01 1 2268283 2268283 C T MORN1 Missense_Mutation p.G348E 0.19 tolerated(0.24) benign(0.02) TCGA-VQ-A8PH-01 1 231829790 231829790 C T DISC1 Missense_Mutation p.R96W 0.14 deleterious(0.03) possibly_damaging(0.888) TCGA-VQ-A8PH-01 1 236751301 236751301 G A HEATR1 Nonsense_Mutation p.R525* 0.17 TCGA-VQ-A8PH-01 1 237167403 237167403 G T MT1HL1 3'UTR 0.31 TCGA-VQ-A8PH-01 1 2524121 2524121 G T MMEL1 Missense_Mutation p.D680E 0.56 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PH-01 1 25715498 25715498 A T RHCE Missense_Mutation p.L303Q 0.30 deleterious(0) probably_damaging(0.981) TCGA-VQ-A8PH-01 1 32165491 32165491 A T COL16A1 Silent p.S63S 0.25 TCGA-VQ-A8PH-01 1 42048097 42048099 CTC - HIVEP3 In_Frame_Del p.R791del 0.19 TCGA-VQ-A8PH-01 1 47611797 47611797 G C CYP4A22 Missense_Mutation p.A446P 0.03 deleterious(0) probably_damaging(0.991) TCGA-VQ-A8PH-01 1 6387467 6387467 G A ACOT7 Missense_Mutation p.R183W 0.21 deleterious(0.04) benign(0.014) TCGA-VQ-A8PH-01 1 6530578 6530578 G A PLEKHG5 Silent p.D635D 0.34 TCGA-VQ-A8PH-01 1 66083659 66083659 A T LEPR Missense_Mutation p.Q742L 0.34 deleterious(0) possibly_damaging(0.756) TCGA-VQ-A8PH-01 1 82456344 82456344 G A LPHN2 Missense_Mutation p.D1243N 0.40 tolerated_low_confidence(0.24) benign(0.059) TCGA-VQ-A8PH-01 1 84988151 84988151 A T SPATA1 RNA 0.11 TCGA-VQ-A8PH-01 20 1285856 1285856 T A SNPH Missense_Mutation p.Y215N 0.12 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PH-01 20 20013799 20013799 C T NAA20 Missense_Mutation p.P169S 0.13 tolerated(0.36) benign(0.002) TCGA-VQ-A8PH-01 20 2464964 2464964 G C ZNF343 Missense_Mutation p.P215A 0.63 tolerated(0.44) benign(0.017) TCGA-VQ-A8PH-01 20 30370083 30370083 G C TPX2 Missense_Mutation p.K362N 0.76 deleterious(0.01) possibly_damaging(0.745) TCGA-VQ-A8PH-01 20 33872149 33872150 CC G EIF6 Intron 0.29 TCGA-VQ-A8PH-01 20 42979537 42979537 A T R3HDML 3'UTR 0.14 TCGA-VQ-A8PH-01 20 5924889 5924889 T A TRMT6 Missense_Mutation p.Q126L 0.14 deleterious(0) probably_damaging(0.926) TCGA-VQ-A8PH-01 21 11038948 11038948 T C BAGE2 RNA 0.05 TCGA-VQ-A8PH-01 21 22656595 22656595 A T NCAM2 Missense_Mutation p.K71M 0.58 deleterious(0.02) possibly_damaging(0.829) TCGA-VQ-A8PH-01 21 28296805 28296805 T A ADAMTS5 Missense_Mutation p.N787I 0.34 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8PH-01 21 38862641 38862641 G C DYRK1A Missense_Mutation p.A277P 0.64 deleterious(0.03) probably_damaging(0.974) TCGA-VQ-A8PH-01 21 45876827 45876827 C G LRRC3 Missense_Mutation p.I100M 0.61 deleterious(0) probably_damaging(0.991) TCGA-VQ-A8PH-01 22 29834712 29834712 T A RFPL1 5'UTR 0.27 TCGA-VQ-A8PH-01 22 37603573 37603573 G C SSTR3 Missense_Mutation p.D90E 0.50 deleterious(0) probably_damaging(1) TCGA-VQ-A8PH-01 2 109294473 109294473 A G LIMS1 Missense_Mutation p.I321M 0.38 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8PH-01 2 136872446 136872446 G T CXCR4 Missense_Mutation p.S355Y 0.12 deleterious_low_confidence(0) unknown(0) TCGA-VQ-A8PH-01 2 179424949 179424949 C G TTN Missense_Mutation p.S28637T 0.23 TCGA-VQ-A8PH-01 2 179430120 179430120 C G TTN Missense_Mutation p.W26913C 0.21 TCGA-VQ-A8PH-01 2 201337675 201337675 A T SPATS2L Missense_Mutation p.H394L 0.29 tolerated(0.16) benign(0.432) TCGA-VQ-A8PH-01 2 207406839 207406839 T C ADAM23 Missense_Mutation p.S213P 0.06 deleterious(0) probably_damaging(0.95) TCGA-VQ-A8PH-01 2 219647106 219647108 CTT - CYP27A1 In_Frame_Del p.F70del 0.39 TCGA-VQ-A8PH-01 2 220480051 220480051 C G STK11IP Silent p.L1046L 0.31 TCGA-VQ-A8PH-01 2 224463351 224463351 T A SCG2 Missense_Mutation p.E217V 0.17 deleterious(0.01) possibly_damaging(0.745) TCGA-VQ-A8PH-01 2 233681684 233681684 G A GIGYF2 Missense_Mutation p.R792Q 0.33 unknown(0) TCGA-VQ-A8PH-01 2 44065159 44065159 C T ABCG5 Intron 0.14 TCGA-VQ-A8PH-01 2 44569563 44569563 C G PREPL Missense_Mutation p.D249H 0.09 deleterious(0.03) probably_damaging(0.945) TCGA-VQ-A8PH-01 2 54035550 54035550 G A ERLEC1 Missense_Mutation p.D332N 0.46 tolerated(0.1) benign(0.142) TCGA-VQ-A8PH-01 2 54120095 54120095 A G PSME4 Silent p.G1347G 0.57 TCGA-VQ-A8PH-01 2 58276019 58276019 G A VRK2 Missense_Mutation p.G18D 0.46 tolerated(0.2) possibly_damaging(0.555) TCGA-VQ-A8PH-01 2 85850754 85850754 C G USP39 Intron 0.39 TCGA-VQ-A8PH-01 3 113664267 113664267 T A GRAMD1C Missense_Mutation p.L644H 0.10 deleterious(0) probably_damaging(0.985) TCGA-VQ-A8PH-01 3 134089570 134089570 T A AMOTL2 Missense_Mutation p.S236C 0.21 deleterious(0.01) possibly_damaging(0.844) TCGA-VQ-A8PH-01 3 151046797 151046797 T A P2RY13 Splice_Site p.X17_splice 0.47 TCGA-VQ-A8PH-01 3 160135538 160135538 A T SMC4 Missense_Mutation p.S489C 0.45 deleterious(0.05) benign(0.019) TCGA-VQ-A8PH-01 3 167272588 167272588 T G WDR49 Splice_Site p.X218_splice 0.31 TCGA-VQ-A8PH-01 3 174814812 174814812 A T NAALADL2 Silent p.S92S 0.40 TCGA-VQ-A8PH-01 3 185226664 185226664 G T LIPH Missense_Mutation p.P424T 0.38 deleterious(0.03) benign(0.356) TCGA-VQ-A8PH-01 3 35748493 35748493 A C ARPP21 Missense_Mutation p.L238F 0.37 deleterious(0.03) benign(0.322) TCGA-VQ-A8PH-01 4 154846 154846 A T ZNF718 RNA 0.39 TCGA-VQ-A8PH-01 4 38828855 38828855 T A TLR6 Missense_Mutation p.K747M 0.36 deleterious(0) possibly_damaging(0.906) TCGA-VQ-A8PH-01 4 84383927 84383927 T C FAM175A Missense_Mutation p.S309G 0.08 tolerated(0.26) benign(0.167) TCGA-VQ-A8PH-01 4 88903656 88903656 A G SPP1 Missense_Mutation p.T185A 0.47 deleterious(0.05) benign(0.016) TCGA-VQ-A8PH-01 4 90857798 90857798 G A MMRN1 Silent p.S989S 0.53 TCGA-VQ-A8PH-01 5 132227816 132227816 T A AFF4 Intron 0.49 TCGA-VQ-A8PH-01 5 134010803 134010803 A T SEC24A Missense_Mutation p.R349S 0.51 deleterious(0.01) benign(0.038) TCGA-VQ-A8PH-01 5 135610458 135610458 C T TRPC7 Missense_Mutation p.R344H 0.50 deleterious(0.03) benign(0.22) TCGA-VQ-A8PH-01 5 140250249 140250249 C G PCDHA11 Missense_Mutation p.P521A 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.546) TCGA-VQ-A8PH-01 5 140250435 140250435 T A PCDHA11 Missense_Mutation p.S583T 0.43 deleterious_low_confidence(0.03) possibly_damaging(0.708) TCGA-VQ-A8PH-01 5 140475631 140475631 C A PCDHB2 Nonsense_Mutation p.Y419* 0.18 TCGA-VQ-A8PH-01 5 140797872 140797872 G A PCDHGB7 Missense_Mutation p.G149E 0.65 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8PH-01 5 161116007 161116007 A T GABRA6 Missense_Mutation p.K93M 0.47 tolerated(0.1) probably_damaging(0.999) TCGA-VQ-A8PH-01 5 161580525 161580525 T G GABRG2 3'UTR 0.31 TCGA-VQ-A8PH-01 5 169230114 169230114 G - DOCK2 Frame_Shift_Del p.E870Sfs*50 0.35 TCGA-VQ-A8PH-01 5 171488200 171488200 G A STK10 Missense_Mutation p.R719W 0.05 deleterious(0) possibly_damaging(0.863) TCGA-VQ-A8PH-01 5 178540887 178540887 T A ADAMTS2 Missense_Mutation p.E1206V 0.53 deleterious_low_confidence(0.01) benign(0.397) TCGA-VQ-A8PH-01 5 32784903 32784903 A T NPR3 Silent p.S476S 0.11 TCGA-VQ-A8PH-01 5 36116569 36116569 T A LMBRD2 Missense_Mutation p.S477C 0.13 deleterious(0.04) possibly_damaging(0.549) TCGA-VQ-A8PH-01 5 37038815 37038815 A C NIPBL Missense_Mutation p.Q2028P 0.36 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8PH-01 5 66460222 66460222 C T MAST4 Nonsense_Mutation p.R1739* 0.29 TCGA-VQ-A8PH-01 5 68487632 68487632 C G CENPH Missense_Mutation p.Q49E 0.36 deleterious(0.01) benign(0.293) TCGA-VQ-A8PH-01 5 89925133 89925133 T A GPR98 Nonsense_Mutation p.L539* 0.52 TCGA-VQ-A8PH-01 6 112452271 112452271 A T LAMA4 Silent p.G1289G 0.33 TCGA-VQ-A8PH-01 6 117240384 117240384 T C RFX6 Silent p.T369T 0.23 TCGA-VQ-A8PH-01 6 125231612 125231612 T A RP11-510H23.1 RNA 0.31 TCGA-VQ-A8PH-01 6 130392183 130392183 C T L3MBTL3 Silent p.P385P 0.17 TCGA-VQ-A8PH-01 6 134491986 134491986 G C SGK1 Missense_Mutation p.T464S 0.16 tolerated(0.41) benign(0.019) TCGA-VQ-A8PH-01 6 145148504 145148504 T A UTRN Missense_Mutation p.M3172K 0.42 deleterious(0) possibly_damaging(0.493) TCGA-VQ-A8PH-01 6 151766865 151766865 G C RMND1 Missense_Mutation p.L28V 0.40 tolerated_low_confidence(0.47) benign(0.003) TCGA-VQ-A8PH-01 6 30673823 30673823 G A MDC1 Missense_Mutation p.P1046L 0.39 tolerated(0.3) benign(0.024) TCGA-VQ-A8PH-01 6 397237 397237 C T IRF4 Missense_Mutation p.P208S 0.34 tolerated(0.21) benign(0.013) TCGA-VQ-A8PH-01 6 43181525 43181525 C A CUL9 Missense_Mutation p.L1855M 0.20 tolerated(0.08) possibly_damaging(0.506) TCGA-VQ-A8PH-01 6 90384178 90384178 G - MDN1 Frame_Shift_Del p.Q4298Rfs*17 0.32 TCGA-VQ-A8PH-01 6 96034772 96034772 A T MANEA Missense_Mutation p.S153C 0.34 deleterious(0) possibly_damaging(0.878) TCGA-VQ-A8PH-01 7 100807493 100807493 C T VGF Missense_Mutation p.G211E 0.64 deleterious_low_confidence(0) probably_damaging(1) TCGA-VQ-A8PH-01 7 111368514 111368514 T A DOCK4 Missense_Mutation p.Y1906F 0.50 tolerated_low_confidence(0.1) benign(0.154) TCGA-VQ-A8PH-01 7 11582673 11582673 A T THSD7A Missense_Mutation p.C509S 0.26 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PH-01 7 128133866 128133866 A T METTL2B Silent p.S226S 0.54 TCGA-VQ-A8PH-01 7 149133770 149133770 T C ZNF777 Missense_Mutation p.D412G 0.64 tolerated(0.24) benign(0.002) TCGA-VQ-A8PH-01 7 17349735 17349735 A T AHR Missense_Mutation p.S81C 0.18 deleterious(0.01) possibly_damaging(0.839) TCGA-VQ-A8PH-01 7 21603807 21603807 T C DNAH11 Missense_Mutation p.L329P 0.32 probably_damaging(0.967) TCGA-VQ-A8PH-01 7 38500972 38500972 T A AMPH Missense_Mutation p.T310S 0.32 deleterious(0.03) probably_damaging(0.997) TCGA-VQ-A8PH-01 7 66410181 66410181 C T TMEM248 Silent p.F126F 0.56 TCGA-VQ-A8PH-01 7 7613261 7613261 T C MIOS Silent p.S385S 0.38 TCGA-VQ-A8PH-01 7 86415986 86415986 C A GRM3 Missense_Mutation p.A293D 0.52 tolerated(0.64) benign(0.064) TCGA-VQ-A8PH-01 7 93516694 93516694 A G TFPI2 Silent p.N170N 0.30 TCGA-VQ-A8PH-01 7 98524881 98524881 A C TRRAP Missense_Mutation p.T1023P 0.35 probably_damaging(0.961) TCGA-VQ-A8PH-01 8 109214146 109214146 T A EIF3E Missense_Mutation p.N436Y 0.29 tolerated(0.66) benign(0.009) TCGA-VQ-A8PH-01 8 109797284 109797284 A T TMEM74 Missense_Mutation p.L15H 0.12 deleterious(0.03) possibly_damaging(0.695) TCGA-VQ-A8PH-01 8 125326167 125326167 T A TMEM65 3'UTR 0.25 TCGA-VQ-A8PH-01 8 133584451 133584451 C G LRRC6 3'UTR 0.13 TCGA-VQ-A8PH-01 8 140631310 140631310 C G KCNK9 Missense_Mutation p.G106R 0.14 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PH-01 8 143996187 143996187 A G CYP11B2 Missense_Mutation p.S245P 0.54 tolerated(0.11) benign(0.33) TCGA-VQ-A8PH-01 8 144991055 144991055 G A PLEC Silent p.L4449L 0.34 TCGA-VQ-A8PH-01 8 145111955 145111955 G C OPLAH Silent p.P534P 0.30 TCGA-VQ-A8PH-01 8 22273611 22273611 G A SLC39A14 Missense_Mutation p.C322Y 0.44 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PH-01 8 36793156 36793156 T C KCNU1 Silent p.Y1056Y 0.31 TCGA-VQ-A8PH-01 8 54147467 54147467 C G OPRK1 Silent p.V154V 0.18 TCGA-VQ-A8PH-01 8 61736634 61736634 G C CHD7 Intron 0.17 TCGA-VQ-A8PH-01 8 67771718 67771718 T A SGK3 Missense_Mutation p.S465T 0.10 tolerated(0.44) benign(0.078) TCGA-VQ-A8PH-01 8 87587991 87587991 T G CNGB3 3'UTR 0.33 TCGA-VQ-A8PH-01 9 101797686 101797686 C G COL15A1 Missense_Mutation p.P759A 0.48 tolerated(0.05) benign(0.429) TCGA-VQ-A8PH-01 9 113563144 113563144 T A MUSK Missense_Mutation p.V829E 0.59 tolerated(0.14) benign(0.034) TCGA-VQ-A8PH-01 9 114520423 114520423 A C C9orf84 Missense_Mutation p.C153G 0.43 tolerated(0.28) benign(0.009) TCGA-VQ-A8PH-01 9 131484047 131484047 C T ZDHHC12 Missense_Mutation p.R122H 0.41 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PH-01 9 13221393 13221393 A T MPDZ Missense_Mutation p.L285Q 0.22 deleterious(0) probably_damaging(0.994) TCGA-VQ-A8PH-01 9 34709354 34709354 C A CCL21 3'UTR 0.21 TCGA-VQ-A8PH-01 9 74562008 74562008 A T C9orf85 Silent p.P63P 0.38 TCGA-VQ-A8PH-01 9 8486161 8486161 G C PTPRD Missense_Mutation p.H886D 0.40 tolerated(0.12) probably_damaging(0.979) TCGA-VQ-A8PH-01 9 8486162 8486162 G T PTPRD Silent p.I885I 0.40 TCGA-VQ-A8PH-01 X 109697481 109697481 A C RGAG1 Silent p.S1212S 0.52 TCGA-VQ-A8PH-01 X 13636000 13636000 G A EGFL6 Silent p.K310K 0.72 TCGA-VQ-A8PH-01 X 15554488 15554488 G A BMX Missense_Mutation p.R387Q 0.74 deleterious(0.01) benign(0.356) TCGA-VQ-A8PH-01 X 24078203 24078203 A G EIF2S3 Splice_Site p.X128_splice 0.08 TCGA-VQ-A8PH-01 X 54956446 54956446 C G TRO Missense_Mutation p.P1097A 0.65 tolerated(0.6) benign(0.298) TCGA-VQ-A8PH-01 X 63557165 63557165 T C MTMR8 Missense_Mutation p.T362A 0.21 deleterious(0.02) probably_damaging(0.926) TCGA-VQ-A8PJ-01 10 24885703 24885703 C T ARHGAP21 Missense_Mutation p.R1148Q 0.80 deleterious(0) probably_damaging(0.969) TCGA-VQ-A8PJ-01 10 53059409 53059409 A G PRKG1 Intron 0.16 TCGA-VQ-A8PJ-01 10 63957881 63957881 G A RTKN2 Missense_Mutation p.S539L 0.83 tolerated(0.42) benign(0.006) TCGA-VQ-A8PJ-01 10 84745078 84745078 A C NRG3 Missense_Mutation p.N603T 0.32 tolerated_low_confidence(0.13) probably_damaging(0.998) TCGA-VQ-A8PJ-01 11 100999408 100999408 G A PGR Missense_Mutation p.P132S 0.33 tolerated_low_confidence(0.11) benign(0.15) TCGA-VQ-A8PJ-01 11 101353769 101353769 T C TRPC6 Missense_Mutation p.E474G 0.15 tolerated(0.32) possibly_damaging(0.678) TCGA-VQ-A8PJ-01 11 123624887 123624887 T G OR6X1 Missense_Mutation p.T114P 0.13 deleterious(0.01) benign(0.003) TCGA-VQ-A8PJ-01 11 125788591 125788591 C T DDX25 Silent p.S369S 0.28 TCGA-VQ-A8PJ-01 11 1265966 1265966 C A MUC5B Missense_Mutation p.T2619N 0.36 unknown(0) TCGA-VQ-A8PJ-01 11 26586878 26586878 A C MUC15 Silent p.T203T 0.23 TCGA-VQ-A8PJ-01 11 3803334 3803334 G A NUP98 Missense_Mutation p.S5L 0.17 deleterious(0) unknown(0) TCGA-VQ-A8PJ-01 11 4411294 4411294 G A TRIM21 Nonsense_Mutation p.Q116* 0.24 TCGA-VQ-A8PJ-01 11 48267240 48267240 A G OR4X2 Silent p.G195G 0.32 TCGA-VQ-A8PJ-01 11 50003643 50003643 G A OR4C12 Missense_Mutation p.T132I 0.11 tolerated_low_confidence(0.24) benign(0.009) TCGA-VQ-A8PJ-01 11 5345290 5345290 T G OR51B2 Missense_Mutation p.M80L 0.18 tolerated(1) benign(0.001) TCGA-VQ-A8PJ-01 11 55340006 55340006 A C OR4C16 Missense_Mutation p.S135R 0.17 tolerated(0.34) benign(0.342) TCGA-VQ-A8PJ-01 11 5537444 5537444 A T UBQLNL Silent p.G76G 0.22 TCGA-VQ-A8PJ-01 11 55658939 55658939 T A TRIM51 Missense_Mutation p.L397H 0.09 deleterious(0) probably_damaging(0.918) TCGA-VQ-A8PJ-01 11 55926872 55926872 A T OR8K5 Nonstop_Mutation p.*308Rext*? 0.29 TCGA-VQ-A8PJ-01 11 61511650 61511650 G A DAGLA Missense_Mutation p.E940K 0.29 deleterious_low_confidence(0.01) benign(0.035) TCGA-VQ-A8PJ-01 11 65149408 65149408 T G SLC25A45 Missense_Mutation p.E5D 0.32 tolerated(1) probably_damaging(0.999) TCGA-VQ-A8PJ-01 11 65265297 65265297 C T MALAT1 RNA 0.06 TCGA-VQ-A8PJ-01 11 86017311 86017311 G A C11orf73 Missense_Mutation p.A19T 0.22 tolerated(0.45) benign(0.345) TCGA-VQ-A8PJ-01 11 86663493 86663493 T A FZD4 Missense_Mutation p.Y102F 0.34 tolerated(0.08) possibly_damaging(0.812) TCGA-VQ-A8PJ-01 11 92087079 92087079 T G FAT3 Missense_Mutation p.S601A 0.58 probably_damaging(0.992) TCGA-VQ-A8PJ-01 12 10124253 10124253 A C CLEC12A Missense_Mutation p.K30Q 0.22 deleterious(0.01) benign(0.19) TCGA-VQ-A8PJ-01 12 104179233 104179233 G C NT5DC3 Silent p.G403G 0.28 TCGA-VQ-A8PJ-01 12 104179234 104179234 C G NT5DC3 Missense_Mutation p.G403A 0.28 deleterious(0.01) probably_damaging(0.998) TCGA-VQ-A8PJ-01 12 113307583 113307583 G A RPH3A Silent p.R210R 0.48 TCGA-VQ-A8PJ-01 12 42854129 42854129 C T PRICKLE1 Missense_Mutation p.V660I 0.26 tolerated(0.18) benign(0.033) TCGA-VQ-A8PJ-01 12 49170254 49170254 C A ADCY6 Missense_Mutation p.D498Y 0.27 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PJ-01 12 57994777 57994777 G A PIP4K2C Missense_Mutation p.G333R 0.11 tolerated(0.19) possibly_damaging(0.882) TCGA-VQ-A8PJ-01 12 99106112 99106112 A G APAF1 Missense_Mutation p.T953A 0.22 tolerated(0.08) benign(0.004) TCGA-VQ-A8PJ-01 13 110804692 110804692 G A COL4A1 Silent p.S1639S 0.49 TCGA-VQ-A8PJ-01 13 23914246 23914246 C T SACS Missense_Mutation p.G1257R 0.33 probably_damaging(1) TCGA-VQ-A8PJ-01 13 25009156 25009156 C T PARP4 Missense_Mutation p.D1375N 0.16 tolerated_low_confidence(0.39) benign(0.003) TCGA-VQ-A8PJ-01 13 27255421 27255421 C A WASF3 Missense_Mutation p.S316Y 0.23 tolerated(0.05) benign(0.17) TCGA-VQ-A8PJ-01 13 40174990 40174990 C T LHFP Missense_Mutation p.G122R 0.26 deleterious(0) possibly_damaging(0.69) TCGA-VQ-A8PJ-01 13 76195815 76195815 T G RP11-173B14.5 Intron 0.27 TCGA-VQ-A8PJ-01 13 78477640 78477640 T G EDNRB Missense_Mutation p.S286R 0.37 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PJ-01 14 19377948 19377948 T G OR11H12 Missense_Mutation p.F119V 0.22 deleterious(0) probably_damaging(0.984) TCGA-VQ-A8PJ-01 14 21423950 21423950 C G RNASE2 Missense_Mutation p.T7S 0.25 tolerated(0.14) benign(0.095) TCGA-VQ-A8PJ-01 14 24031538 24031538 T G AP1G2 Silent p.T529T 0.46 TCGA-VQ-A8PJ-01 14 35032211 35032211 A G SNX6 3'UTR 0.60 TCGA-VQ-A8PJ-01 14 73572704 73572704 G A RBM25 Missense_Mutation p.R431Q 0.50 unknown(0) TCGA-VQ-A8PJ-01 14 80668554 80668554 A C DIO2 3'Flank 0.50 TCGA-VQ-A8PJ-01 14 92251597 92251597 A C TC2N Missense_Mutation p.I424S 0.40 tolerated(0.23) possibly_damaging(0.533) TCGA-VQ-A8PJ-01 15 20649633 20649633 G A HERC2P3 RNA 0.12 TCGA-VQ-A8PJ-01 15 24921658 24921658 A G NPAP1 Missense_Mutation p.K215R 0.16 tolerated(0.76) benign(0.004) TCGA-VQ-A8PJ-01 15 25351685 25351685 A C SNORD116-29 RNA 0.25 TCGA-VQ-A8PJ-01 15 28459109 28459109 C T HERC2 Missense_Mutation p.E2189K 0.26 benign(0.003) TCGA-VQ-A8PJ-01 15 37390370 37390370 C A MEIS2 Missense_Mutation p.D15Y 0.24 deleterious_low_confidence(0) possibly_damaging(0.707) TCGA-VQ-A8PJ-01 15 71535315 71535315 A C THSD4 Missense_Mutation p.E264D 0.29 tolerated(0.28) benign(0.006) TCGA-VQ-A8PJ-01 16 19126930 19126930 C T ITPRIPL2 Missense_Mutation p.R383C 0.37 deleterious(0) probably_damaging(0.993) TCGA-VQ-A8PJ-01 16 20791856 20791856 C T ACSM3 Intron 0.27 TCGA-VQ-A8PJ-01 16 31072662 31072662 C T ZNF668 Silent p.T552T 0.33 TCGA-VQ-A8PJ-01 16 3406323 3406323 G A OR2C1 Missense_Mutation p.R128Q 0.28 tolerated(0.35) benign(0.018) TCGA-VQ-A8PJ-01 16 4951073 4951073 C A PPL Missense_Mutation p.Q152H 0.42 tolerated(0.07) probably_damaging(0.927) TCGA-VQ-A8PJ-01 16 70016662 70016662 T A PDXDC2P Splice_Site 0.35 TCGA-VQ-A8PJ-01 16 77397780 77397781 - ACC ADAMTS18 In_Frame_Ins p.V325dup 0.30 TCGA-VQ-A8PJ-01 17 11583188 11583188 A C DNAH9 Missense_Mutation p.K1156N 0.21 benign(0.126) TCGA-VQ-A8PJ-01 17 18148304 18148304 C T FLII 3'UTR 0.24 TCGA-VQ-A8PJ-01 17 18420687 18420687 A - CTD-2303H24.2 RNA 0.10 TCGA-VQ-A8PJ-01 17 27228303 27228303 G A DHRS13 Silent p.G129G 0.46 TCGA-VQ-A8PJ-01 17 3144396 3144396 T A OR1D4 RNA 0.27 TCGA-VQ-A8PJ-01 17 33513577 33513577 A C UNC45B Nonstop_Mutation p.*932Sext*45 0.32 TCGA-VQ-A8PJ-01 17 40010777 40010777 G A KLHL11 Silent p.L448L 0.24 TCGA-VQ-A8PJ-01 17 4645313 4645313 C T ZMYND15 Nonsense_Mutation p.R311* 0.36 TCGA-VQ-A8PJ-01 17 56780684 56780684 C T RAD51C Silent p.H233H 0.74 TCGA-VQ-A8PJ-01 17 7578556 7578556 T A TP53 Splice_Site p.X126_splice 0.75 TCGA-VQ-A8PJ-01 17 79220213 79220213 C G SLC38A10 Missense_Mutation p.D835H 0.15 deleterious(0.01) possibly_damaging(0.615) TCGA-VQ-A8PJ-01 18 13884978 13884978 C T MC2R Silent p.S180S 0.41 TCGA-VQ-A8PJ-01 18 5394733 5394733 T G EPB41L3 Missense_Mutation p.K1071N 0.19 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PJ-01 19 12739295 12739295 C T ZNF791 Missense_Mutation p.H318Y 0.10 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PJ-01 19 20236284 20236284 C T CTC-260E6.2 RNA 0.39 TCGA-VQ-A8PJ-01 19 21607024 21607024 A G ZNF493 Silent p.E521E 0.06 TCGA-VQ-A8PJ-01 19 22156888 22156888 T G ZNF208 Missense_Mutation p.K316N 0.11 tolerated(0.71) benign(0.045) TCGA-VQ-A8PJ-01 19 22272045 22272045 G T ZNF257 Missense_Mutation p.R498L 0.41 tolerated(0.7) benign(0.008) TCGA-VQ-A8PJ-01 19 31769896 31769896 T G TSHZ3 Missense_Mutation p.K268T 0.15 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PJ-01 19 37487856 37487856 A C ZNF568 Missense_Mutation p.K357N 0.33 deleterious(0) probably_damaging(0.984) TCGA-VQ-A8PJ-01 19 37967337 37967337 G C ZNF570 Splice_Site p.X86_splice 0.12 TCGA-VQ-A8PJ-01 19 38103075 38103075 T C ZNF540 Silent p.S298S 0.09 TCGA-VQ-A8PJ-01 19 43530588 43530588 C T PSG11 5'UTR 0.21 TCGA-VQ-A8PJ-01 19 52002813 52002813 A G SIGLEC12 Silent p.T322T 0.14 TCGA-VQ-A8PJ-01 19 52146810 52146810 G A SIGLEC14 Silent p.L376L 0.10 TCGA-VQ-A8PJ-01 19 53740815 53740815 T G ZNF677 Missense_Mutation p.S389R 0.15 tolerated(0.15) possibly_damaging(0.604) TCGA-VQ-A8PJ-01 19 57065359 57065359 A T ZFP28 Missense_Mutation p.Q402L 0.07 tolerated(0.28) benign(0.001) TCGA-VQ-A8PJ-01 19 57065438 57065438 T C ZFP28 Silent p.T428T 0.23 TCGA-VQ-A8PJ-01 19 58083836 58083836 G A ZNF416 Missense_Mutation p.S479F 0.06 tolerated(0.14) benign(0.048) TCGA-VQ-A8PJ-01 19 58371252 58371252 C T ZNF587 Missense_Mutation p.P491L 0.08 deleterious(0.01) probably_damaging(0.982) TCGA-VQ-A8PJ-01 1 103491441 103491441 T G COL11A1 Intron 0.40 TCGA-VQ-A8PJ-01 1 117695885 117695885 T G VTCN1 Missense_Mutation p.Q184H 0.30 tolerated(0.5) benign(0.026) TCGA-VQ-A8PJ-01 1 152488132 152488132 G T CRCT1 Silent p.R91R 0.71 TCGA-VQ-A8PJ-01 1 152759898 152759898 T C LCE1E Silent p.S41S 0.18 TCGA-VQ-A8PJ-01 1 158549024 158549024 A G OR10X1 Silent p.G222G 0.71 TCGA-VQ-A8PJ-01 1 159161783 159161783 A C CADM3 Missense_Mutation p.K83T 0.15 tolerated(0.92) benign(0.016) TCGA-VQ-A8PJ-01 1 159283558 159283558 G C OR10J3 Missense_Mutation p.Q298E 0.12 tolerated(0.35) benign(0.001) TCGA-VQ-A8PJ-01 1 159410110 159410110 T G OR10J1 Missense_Mutation p.F188V 0.41 deleterious(0) probably_damaging(0.954) TCGA-VQ-A8PJ-01 1 161180544 161180544 C T NDUFS2 Intron 0.31 TCGA-VQ-A8PJ-01 1 173833565 173833565 A C ZBTB37 5'Flank 0.37 TCGA-VQ-A8PJ-01 1 186276138 186276138 C T PRG4 Silent p.P429P 0.50 TCGA-VQ-A8PJ-01 1 227316932 227316932 T G CDC42BPA Missense_Mutation p.E464A 0.77 deleterious(0.04) possibly_damaging(0.903) TCGA-VQ-A8PJ-01 1 232940847 232940847 A T MAP10 Silent p.I26I 0.11 TCGA-VQ-A8PJ-01 1 235420530 235420530 C A ARID4B Missense_Mutation p.R43I 0.09 deleterious(0) possibly_damaging(0.794) TCGA-VQ-A8PJ-01 1 247200832 247200832 T G ZNF670 Missense_Mutation p.K363N 0.68 deleterious(0) probably_damaging(1) TCGA-VQ-A8PJ-01 1 248458297 248458297 T C OR2T12 Missense_Mutation p.N195S 0.20 tolerated(0.48) benign(0.015) TCGA-VQ-A8PJ-01 1 62261215 62261215 T C INADL Silent p.N415N 0.19 TCGA-VQ-A8PJ-01 1 71418656 71418656 T A PTGER3 Missense_Mutation p.E397D 0.49 tolerated_low_confidence(0.79) unknown(0) TCGA-VQ-A8PJ-01 20 23029201 23029201 T C THBD Missense_Mutation p.Y314C 0.33 deleterious(0) probably_damaging(0.982) TCGA-VQ-A8PJ-01 20 23667758 23667758 G T CST4 Silent p.T103T 0.10 TCGA-VQ-A8PJ-01 20 36856573 36856573 C T KIAA1755 Silent p.L647L 0.16 TCGA-VQ-A8PJ-01 20 44674978 44674978 T G SLC12A5 Missense_Mutation p.F587V 0.28 deleterious(0) possibly_damaging(0.732) TCGA-VQ-A8PJ-01 21 41384985 41384985 G A DSCAM Silent p.Y2005Y 0.35 TCGA-VQ-A8PJ-01 21 41648024 41648024 T G DSCAM Missense_Mutation p.I786L 0.15 deleterious(0.03) benign(0.08) TCGA-VQ-A8PJ-01 22 45243856 45243856 T C ARHGAP8 Missense_Mutation p.L347P 0.21 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8PJ-01 2 113088959 113088959 G A ZC3H6 Missense_Mutation p.D822N 0.48 tolerated(0.07) possibly_damaging(0.856) TCGA-VQ-A8PJ-01 2 125204434 125204434 C T CNTNAP5 Nonsense_Mutation p.Q280* 0.33 TCGA-VQ-A8PJ-01 2 138208539 138208539 A G THSD7B Silent p.K1028K 0.60 TCGA-VQ-A8PJ-01 2 141773457 141773457 T G LRP1B Missense_Mutation p.E666D 0.16 possibly_damaging(0.523) TCGA-VQ-A8PJ-01 2 149221437 149221437 A G MBD5 Missense_Mutation p.M116V 0.32 deleterious(0.01) benign(0.043) TCGA-VQ-A8PJ-01 2 149226804 149226804 C T MBD5 Missense_Mutation p.S431L 0.32 tolerated(0.06) possibly_damaging(0.504) TCGA-VQ-A8PJ-01 2 153551059 153551059 T G PRPF40A Missense_Mutation p.L98F 0.47 tolerated(0.7) possibly_damaging(0.879) TCGA-VQ-A8PJ-01 2 160898577 160898577 C T PLA2R1 Missense_Mutation p.R209H 0.33 tolerated(0.28) benign(0.021) TCGA-VQ-A8PJ-01 2 178095992 178095997 AATGTT - NFE2L2 In_Frame_Del p.K445_S447delinsT 0.39 TCGA-VQ-A8PJ-01 2 179358640 179358640 A G PLEKHA3 Missense_Mutation p.D125G 0.48 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PJ-01 2 179547557 179547557 T G TTN Missense_Mutation p.E10987D 0.48 TCGA-VQ-A8PJ-01 2 185800544 185800544 A C ZNF804A Missense_Mutation p.T141P 0.38 deleterious(0) probably_damaging(0.987) TCGA-VQ-A8PJ-01 2 190541670 190541670 T C ANKAR Missense_Mutation p.Y152H 0.21 deleterious(0) possibly_damaging(0.614) TCGA-VQ-A8PJ-01 2 196788336 196788336 G A DNAH7 Missense_Mutation p.L1270F 0.21 deleterious(0) possibly_damaging(0.701) TCGA-VQ-A8PJ-01 2 31178796 31178796 G A GALNT14 Missense_Mutation p.R177C 0.44 deleterious(0) probably_damaging(1) TCGA-VQ-A8PJ-01 2 50149269 50149269 A G NRXN1 Missense_Mutation p.L1486P 0.18 deleterious(0) probably_damaging(1) TCGA-VQ-A8PJ-01 3 134078137 134078137 G A AMOTL2 Missense_Mutation p.R698W 0.20 deleterious(0.04) benign(0.001) TCGA-VQ-A8PJ-01 3 141497271 141497271 C T GRK7 Missense_Mutation p.R49C 0.19 deleterious(0) probably_damaging(0.939) TCGA-VQ-A8PJ-01 3 185181432 185181432 G A MAP3K13 Missense_Mutation p.R458H 0.21 deleterious(0) possibly_damaging(0.893) TCGA-VQ-A8PJ-01 3 48611302 48611302 G T COL7A1 Missense_Mutation p.P2175T 0.35 benign(0.006) TCGA-VQ-A8PJ-01 3 49138083 49138083 G A QARS Missense_Mutation p.R301C 0.12 deleterious(0) probably_damaging(1) TCGA-VQ-A8PJ-01 3 52819083 52819083 A C ITIH1 Missense_Mutation p.K477N 0.34 tolerated(1) benign(0) TCGA-VQ-A8PJ-01 4 113539963 113539963 C T C4orf21 Missense_Mutation p.S412N 0.30 tolerated(0.32) benign(0.002) TCGA-VQ-A8PJ-01 4 115997298 115997298 A G NDST4 Missense_Mutation p.S299P 0.19 tolerated(0.6) benign(0.007) TCGA-VQ-A8PJ-01 4 141607520 141607520 G C TBC1D9 Missense_Mutation p.T113R 0.30 deleterious(0.01) probably_damaging(0.986) TCGA-VQ-A8PJ-01 4 147824764 147824764 A G TTC29 Missense_Mutation p.I173T 0.38 deleterious(0) possibly_damaging(0.796) TCGA-VQ-A8PJ-01 4 17816577 17816577 C G NCAPG Missense_Mutation p.R216G 0.25 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8PJ-01 4 6031497 6031497 T G JAKMIP1 Missense_Mutation p.E797D 0.45 tolerated(0.46) benign(0.007) TCGA-VQ-A8PJ-01 4 89039285 89039285 C A ABCG2 Missense_Mutation p.A273S 0.32 deleterious(0.01) possibly_damaging(0.53) TCGA-VQ-A8PJ-01 5 35807348 35807348 A C SPEF2 Missense_Mutation p.K1791T 0.54 deleterious(0) possibly_damaging(0.709) TCGA-VQ-A8PJ-01 5 37014845 37014845 T G NIPBL Missense_Mutation p.F1541V 0.47 deleterious(0) possibly_damaging(0.897) TCGA-VQ-A8PJ-01 6 111688830 111688830 T C REV3L Missense_Mutation p.D2054G 0.30 tolerated(0.22) benign(0) TCGA-VQ-A8PJ-01 6 129794493 129794493 T G LAMA2 Missense_Mutation p.L2479V 0.31 tolerated(0.62) probably_damaging(0.932) TCGA-VQ-A8PJ-01 6 134301353 134301353 G C TBPL1 Missense_Mutation p.K30N 0.20 tolerated(0.21) benign(0.024) TCGA-VQ-A8PJ-01 6 137814789 137814789 G A OLIG3 Silent p.H173H 0.59 TCGA-VQ-A8PJ-01 6 170140385 170140385 T G TCTE3 Missense_Mutation p.S165R 0.38 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PJ-01 6 26017960 26017960 T A HIST1H1A Translation_Start_Site p.M1? 0.19 deleterious(0) unknown(0) TCGA-VQ-A8PJ-01 6 30886678 30886678 G A VARS2 Missense_Mutation p.D384N 0.17 deleterious(0) probably_damaging(1) TCGA-VQ-A8PJ-01 6 31636327 31636327 G T CSNK2B-LY6G5B-1181 Nonsense_Mutation p.E63* 0.17 TCGA-VQ-A8PJ-01 6 38831769 38831769 A T DNAH8 Missense_Mutation p.K1927I 0.13 possibly_damaging(0.487) TCGA-VQ-A8PJ-01 6 38890950 38890950 T C DNAH8 Silent p.A3376A 0.08 TCGA-VQ-A8PJ-01 6 39876869 39876869 C G MOCS1 Missense_Mutation p.S371T 0.15 tolerated(0.22) benign(0.005) TCGA-VQ-A8PJ-01 6 52268678 52268678 C T PAQR8 Silent p.L223L 0.39 TCGA-VQ-A8PJ-01 6 78172741 78172741 G T HTR1B Nonsense_Mutation p.S127* 0.13 TCGA-VQ-A8PJ-01 6 8413757 8413757 C G SLC35B3 3'UTR 0.41 TCGA-VQ-A8PJ-01 7 105752632 105752632 A G SYPL1 Missense_Mutation p.L26P 0.41 deleterious(0.04) benign(0.028) TCGA-VQ-A8PJ-01 7 113519278 113519278 T A PPP1R3A Silent p.G623G 0.41 TCGA-VQ-A8PJ-01 7 11457137 11457137 T G THSD7A Missense_Mutation p.K1159N 0.25 tolerated(0.31) benign(0.395) TCGA-VQ-A8PJ-01 7 127014849 127014849 C A ZNF800 Missense_Mutation p.V181L 0.36 tolerated(0.47) benign(0.002) TCGA-VQ-A8PJ-01 7 33014963 33014963 C T FKBP9 Silent p.D179D 0.12 TCGA-VQ-A8PJ-01 7 50121491 50121491 T C ZPBP Silent p.K71K 0.20 TCGA-VQ-A8PJ-01 7 89984513 89984513 C G GTPBP10 Missense_Mutation p.L145V 0.15 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8PJ-01 7 98985676 98985676 C T ARPC1B Missense_Mutation p.P62S 0.23 deleterious(0.03) benign(0.031) TCGA-VQ-A8PJ-01 8 104427502 104427502 G A DCAF13 Missense_Mutation p.C95Y 0.23 deleterious_low_confidence(0) benign(0.094) TCGA-VQ-A8PJ-01 8 105521283 105521283 C T LRP12 Silent p.E52E 0.23 TCGA-VQ-A8PJ-01 8 113392651 113392651 A G CSMD3 Silent p.S2022S 0.29 TCGA-VQ-A8PJ-01 8 139165293 139165293 T C FAM135B Silent p.E475E 0.20 TCGA-VQ-A8PJ-01 8 140630909 140630909 G A KCNK9 Silent p.L239L 0.41 TCGA-VQ-A8PJ-01 8 144378494 144378494 G A ZNF696 Missense_Mutation p.A217T 0.29 tolerated(0.11) possibly_damaging(0.762) TCGA-VQ-A8PJ-01 8 25715895 25715895 A C EBF2 Missense_Mutation p.L490V 0.15 deleterious_low_confidence(0.02) probably_damaging(0.931) TCGA-VQ-A8PJ-01 8 33369970 33369970 G A TTI2 Silent p.D54D 0.15 TCGA-VQ-A8PJ-01 8 77768215 77768215 T C ZFHX4 Silent p.L3020L 0.20 TCGA-VQ-A8PJ-01 8 88365898 88365898 T G CNBD1 Missense_Mutation p.L396R 0.26 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PJ-01 8 97172962 97172962 G A GDF6 5'UTR 0.42 TCGA-VQ-A8PJ-01 8 99441562 99441562 T G KCNS2 Missense_Mutation p.V452G 0.21 deleterious(0) probably_damaging(0.987) TCGA-VQ-A8PJ-01 9 104432973 104432973 T G GRIN3A Missense_Mutation p.K574T 0.36 deleterious(0.02) benign(0.292) TCGA-VQ-A8PJ-01 X 105280836 105280836 T C SERPINA7 Missense_Mutation p.S72G 0.58 deleterious(0) possibly_damaging(0.872) TCGA-VQ-A8PJ-01 X 130419052 130419052 T A IGSF1 Intron 0.55 TCGA-VQ-A8PJ-01 X 140996237 140996237 A G MAGEC1 Missense_Mutation p.E1016G 0.61 deleterious(0) unknown(0) TCGA-VQ-A8PJ-01 X 142967193 142967193 T C UBE2NL 5'UTR 0.30 TCGA-VQ-A8PJ-01 X 151900057 151900057 T G MAGEA12 Missense_Mutation p.Q248H 0.29 tolerated(0.12) benign(0.083) TCGA-VQ-A8PJ-01 X 152826271 152826271 G A ATP2B3 Missense_Mutation p.E993K 0.37 deleterious(0.02) probably_damaging(0.976) TCGA-VQ-A8PJ-01 X 15863537 15863537 G C AP1S2 Missense_Mutation p.L131V 0.27 tolerated(0.1) benign(0.181) TCGA-VQ-A8PJ-01 X 21534701 21534701 A G CNKSR2 Silent p.S303S 0.51 TCGA-VQ-A8PK-01 10 13701382 13701382 G A FRMD4A Silent p.S669S 0.41 TCGA-VQ-A8PK-01 10 31815808 31815808 G A ZEB1 Silent p.E998E 0.26 TCGA-VQ-A8PK-01 10 55582244 55582244 G T PCDH15 Missense_Mutation p.P1750T 0.60 deleterious_low_confidence(0.03) unknown(0) TCGA-VQ-A8PK-01 10 6273228 6273228 G T PFKFB3 Intron 0.18 TCGA-VQ-A8PK-01 10 8007450 8007450 A G TAF3 Silent p.K659K 0.32 TCGA-VQ-A8PK-01 11 109294443 109294443 C T C11orf87 Silent p.S28S 0.23 TCGA-VQ-A8PK-01 11 18738297 18738297 T C IGSF22 Silent p.Q408Q 0.48 TCGA-VQ-A8PK-01 11 4661522 4661522 T G OR51D1 Missense_Mutation p.F168V 0.43 tolerated(0.67) benign(0.124) TCGA-VQ-A8PK-01 11 48166661 48166661 T G PTPRJ Missense_Mutation p.L966V 0.38 deleterious(0.04) probably_damaging(0.999) TCGA-VQ-A8PK-01 11 55735239 55735239 G T OR10AG1 Missense_Mutation p.S234Y 0.39 deleterious(0) probably_damaging(0.958) TCGA-VQ-A8PK-01 12 10978711 10978711 G A TAS2R10 Missense_Mutation p.S53L 0.76 deleterious(0) probably_damaging(0.992) TCGA-VQ-A8PK-01 12 22069902 22069902 A G ABCC9 Missense_Mutation p.M181T 0.24 deleterious(0.03) benign(0.085) TCGA-VQ-A8PK-01 12 31542342 31542342 C A DENND5B Missense_Mutation p.C1186F 0.09 deleterious(0) probably_damaging(0.97) TCGA-VQ-A8PK-01 12 32764182 32764182 C T FGD4 Missense_Mutation p.R435W 0.40 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8PK-01 12 33559904 33559904 A C SYT10 Silent p.T299T 0.33 TCGA-VQ-A8PK-01 12 49169145 49169145 G A ADCY6 Missense_Mutation p.R641W 0.49 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PK-01 13 19751525 19751525 A T TUBA3C Missense_Mutation p.C200S 0.28 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-VQ-A8PK-01 13 19997247 19997247 A C TPTE2 Missense_Mutation p.I508M 0.26 tolerated(0.06) benign(0.147) TCGA-VQ-A8PK-01 13 36700074 36700074 T A DCLK1 Silent p.R67R 0.30 TCGA-VQ-A8PK-01 13 37625641 37625641 A C SUPT20H 5'UTR 0.41 TCGA-VQ-A8PK-01 13 42764548 42764548 A T DGKH Missense_Mutation p.D641V 0.31 deleterious(0.03) benign(0.12) TCGA-VQ-A8PK-01 13 78474695 78474695 A C EDNRB Missense_Mutation p.L439R 0.22 tolerated(0.16) possibly_damaging(0.782) TCGA-VQ-A8PK-01 13 78477702 78477702 T G EDNRB Missense_Mutation p.K265T 0.26 deleterious(0) probably_damaging(0.994) TCGA-VQ-A8PK-01 14 20295670 20295670 A C OR4N2 Missense_Mutation p.Q21H 0.06 tolerated(0.51) benign(0) TCGA-VQ-A8PK-01 14 24542209 24542209 G C CPNE6 Missense_Mutation p.V22L 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A8PK-01 14 64469841 64469841 C A SYNE2 Missense_Mutation p.T1397N 0.60 possibly_damaging(0.65) TCGA-VQ-A8PK-01 15 25342896 25342896 A C SNORD116-25 RNA 0.06 TCGA-VQ-A8PK-01 15 42373790 42373790 G A PLA2G4D Silent p.L282L 0.65 TCGA-VQ-A8PK-01 15 87089270 87089270 A C AGBL1 Missense_Mutation p.N862T 0.13 deleterious(0) probably_damaging(1) TCGA-VQ-A8PK-01 16 70416799 70416799 T - ST3GAL2 Frame_Shift_Del p.K263Sfs*32 0.35 TCGA-VQ-A8PK-01 16 76486619 76486619 A C CNTNAP4 Missense_Mutation p.K356T 0.42 tolerated(0.14) benign(0.053) TCGA-VQ-A8PK-01 16 77327149 77327149 T C ADAMTS18 Missense_Mutation p.K1005E 0.25 deleterious(0.04) possibly_damaging(0.643) TCGA-VQ-A8PK-01 16 77859351 77859351 G T VAT1L Missense_Mutation p.G191V 0.33 deleterious(0) probably_damaging(1) TCGA-VQ-A8PK-01 17 11671879 11671879 A G DNAH9 Missense_Mutation p.K2427R 0.42 benign(0.019) TCGA-VQ-A8PK-01 17 48655758 48655758 C T CACNA1G Missense_Mutation p.R712W 0.07 deleterious(0.04) benign(0.003) TCGA-VQ-A8PK-01 17 65944314 65944314 G C BPTF Missense_Mutation p.Q2606H 0.36 probably_damaging(0.989) TCGA-VQ-A8PK-01 17 7577520 7577520 A C TP53 Missense_Mutation p.I254S 0.43 deleterious(0) probably_damaging(1) TCGA-VQ-A8PK-01 18 2616466 2616466 G T NDC80 Missense_Mutation p.D608Y 0.04 tolerated(0.08) benign(0.012) TCGA-VQ-A8PK-01 18 50683847 50683847 T C DCC Silent p.T461T 0.17 TCGA-VQ-A8PK-01 18 5891938 5891938 A G TMEM200C Missense_Mutation p.V42A 0.61 deleterious(0) probably_damaging(0.959) TCGA-VQ-A8PK-01 19 11313297 11313297 G A DOCK6 Missense_Mutation p.S1775L 0.34 deleterious(0) benign(0.154) TCGA-VQ-A8PK-01 19 14627477 14627477 C T DNAJB1 Missense_Mutation p.R198Q 0.45 deleterious(0.04) benign(0.014) TCGA-VQ-A8PK-01 19 20117988 20117988 A G ZNF682 Missense_Mutation p.L108P 0.11 tolerated(0.13) probably_damaging(0.965) TCGA-VQ-A8PK-01 19 44470334 44470334 A C ZNF221 Missense_Mutation p.K227T 0.49 tolerated(0.1) benign(0.07) TCGA-VQ-A8PK-01 19 51192500 51192500 C G SHANK1 Missense_Mutation p.Q667H 0.05 possibly_damaging(0.783) TCGA-VQ-A8PK-01 19 53643727 53643727 C T ZNF347 Missense_Mutation p.R786K 0.09 tolerated(0.11) benign(0.039) TCGA-VQ-A8PK-01 19 57286557 57286557 A G ZIM2 Silent p.C361C 0.67 TCGA-VQ-A8PK-01 1 10527286 10527286 A C DFFA Missense_Mutation p.D134E 0.30 deleterious(0) probably_damaging(0.98) TCGA-VQ-A8PK-01 1 185153427 185153427 G C SWT1 Silent p.L397L 0.30 TCGA-VQ-A8PK-01 1 247150534 247150534 C G ZNF695 Missense_Mutation p.R428T 0.11 tolerated(0.13) probably_damaging(0.927) TCGA-VQ-A8PK-01 1 248437020 248437020 C T OR2T33 Missense_Mutation p.V33I 0.27 deleterious(0.01) benign(0.069) TCGA-VQ-A8PK-01 1 248616135 248616135 T G OR2T2 Missense_Mutation p.F13V 0.15 deleterious(0) benign(0.326) TCGA-VQ-A8PK-01 1 248756396 248756396 A T OR2T10 Missense_Mutation p.I225N 0.36 deleterious(0) probably_damaging(0.987) TCGA-VQ-A8PK-01 1 26595123 26595123 G A CEP85 Silent p.Q497Q 0.22 TCGA-VQ-A8PK-01 1 47051632 47051632 G A MKNK1 Intron 0.28 TCGA-VQ-A8PK-01 20 30231270 30231270 C G COX4I2 Missense_Mutation p.T104R 0.41 deleterious(0) probably_damaging(1) TCGA-VQ-A8PK-01 20 61511216 61511216 C T DIDO1 Missense_Mutation p.S2031N 0.11 probably_damaging(0.99) TCGA-VQ-A8PK-01 20 62366739 62366739 C T ZGPAT Missense_Mutation p.P427L 0.38 deleterious(0.03) benign(0.103) TCGA-VQ-A8PK-01 22 26224933 26224933 G T MYO18B Nonsense_Mutation p.E993* 0.63 TCGA-VQ-A8PK-01 2 172700932 172700932 C T SLC25A12 Missense_Mutation p.G138R 0.27 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8PK-01 2 179480092 179480092 T C TTN Missense_Mutation p.R16194G 0.37 TCGA-VQ-A8PK-01 2 204735579 204735579 A G CTLA4 Missense_Mutation p.Y127C 0.36 deleterious(0) probably_damaging(1) TCGA-VQ-A8PK-01 2 207174388 207174388 T C ZDBF2 Silent p.F1712F 0.60 TCGA-VQ-A8PK-01 2 212652850 212652850 G C ERBB4 Missense_Mutation p.N152K 0.21 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8PK-01 2 219757519 219757519 G A WNT10A Silent p.R260R 0.33 TCGA-VQ-A8PK-01 2 27821117 27821117 C T ZNF512 Silent p.V91V 0.23 TCGA-VQ-A8PK-01 2 29296101 29296101 G A C2orf71 Missense_Mutation p.L343F 0.28 tolerated(0.12) possibly_damaging(0.8) TCGA-VQ-A8PK-01 2 66665034 66665034 G C MEIS1 Missense_Mutation p.A60P 0.24 tolerated(1) benign(0) TCGA-VQ-A8PK-01 2 90077792 90077792 C T IGKV3D-20 Nonsense_Mutation p.Q6* 0.04 TCGA-VQ-A8PK-01 3 100016779 100016779 C G TBC1D23 Missense_Mutation p.L297V 0.07 tolerated(0.06) benign(0.443) TCGA-VQ-A8PK-01 3 123512541 123512541 C T MYLK Missense_Mutation p.A50T 0.07 deleterious(0.01) possibly_damaging(0.75) TCGA-VQ-A8PK-01 3 138724868 138724868 C T PRR23A Silent p.E81E 0.12 TCGA-VQ-A8PK-01 3 138738748 138738748 T G PRR23B Missense_Mutation p.E252D 0.38 tolerated(0.24) benign(0.396) TCGA-VQ-A8PK-01 3 141163979 141163979 C T ZBTB38 Missense_Mutation p.R917C 0.46 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PK-01 3 1427371 1427371 A C CNTN6 Missense_Mutation p.N865T 0.36 tolerated(0.6) benign(0.019) TCGA-VQ-A8PK-01 3 169504372 169504372 C T MYNN Missense_Mutation p.T580M 0.20 deleterious_low_confidence(0) possibly_damaging(0.575) TCGA-VQ-A8PK-01 3 44776578 44776578 A T ZNF501 Missense_Mutation p.E222V 0.51 deleterious_low_confidence(0.04) benign(0.428) TCGA-VQ-A8PK-01 3 69072370 69072370 G A TMF1 Silent p.Y1080Y 0.44 TCGA-VQ-A8PK-01 4 101439161 101439161 G A EMCN 5'UTR 0.77 TCGA-VQ-A8PK-01 4 110756578 110756578 C T RRH Silent p.V118V 0.70 TCGA-VQ-A8PK-01 4 148744076 148744076 T G ARHGAP10 Missense_Mutation p.L94V 0.28 deleterious(0) probably_damaging(0.967) TCGA-VQ-A8PK-01 4 42122252 42122252 C G BEND4 Missense_Mutation p.E402D 0.54 deleterious_low_confidence(0) possibly_damaging(0.899) TCGA-VQ-A8PK-01 4 94137982 94137982 A C GRID2 Missense_Mutation p.S295R 0.24 tolerated(0.13) benign(0.033) TCGA-VQ-A8PK-01 5 26886108 26886108 G A CDH9 Missense_Mutation p.L533F 0.06 tolerated(0.7) benign(0.327) TCGA-VQ-A8PK-01 5 45695836 45695848 CACCGCCTTCTGG - HCN1 Frame_Shift_Del p.S116Rfs*28 0.30 TCGA-VQ-A8PK-01 5 75906897 75906897 G C IQGAP2 Missense_Mutation p.L470F 0.11 deleterious(0.03) benign(0.002) TCGA-VQ-A8PK-01 5 79026782 79026782 C T CMYA5 Missense_Mutation p.P732S 0.15 benign(0.009) TCGA-VQ-A8PK-01 6 130762684 130762684 T G TMEM200A Missense_Mutation p.L373V 0.41 tolerated(0.1) probably_damaging(0.991) TCGA-VQ-A8PK-01 6 163985575 163985575 G C QKI Intron 0.75 TCGA-VQ-A8PK-01 6 31857079 31857079 C T EHMT2 Missense_Mutation p.R347Q 0.58 tolerated(0.05) benign(0.199) TCGA-VQ-A8PK-01 6 50696968 50696968 T G TFAP2D Missense_Mutation p.L276V 0.07 deleterious(0.01) probably_damaging(0.946) TCGA-VQ-A8PK-01 6 6225077 6225077 T C F13A1 Missense_Mutation p.D272G 0.35 deleterious(0) probably_damaging(0.977) TCGA-VQ-A8PK-01 7 106523592 106523592 C T PIK3CG Missense_Mutation p.S915F 0.29 tolerated(0.06) benign(0.018) TCGA-VQ-A8PK-01 7 108524088 108524088 A C C7orf66 Silent p.S108S 0.33 TCGA-VQ-A8PK-01 7 126086136 126086136 A C GRM8 Intron 0.06 TCGA-VQ-A8PK-01 7 151962139 151962139 C T KMT2C Missense_Mutation p.V390M 0.02 probably_damaging(1) TCGA-VQ-A8PK-01 7 156746878 156746878 C A NOM1 Missense_Mutation p.D398E 0.07 tolerated(0.39) benign(0.07) TCGA-VQ-A8PK-01 7 35912363 35912363 G T SEPT7 Missense_Mutation p.D123Y 0.26 deleterious(0) probably_damaging(0.985) TCGA-VQ-A8PK-01 7 6094220 6094220 G A EIF2AK1 Silent p.H78H 0.30 TCGA-VQ-A8PK-01 7 73457483 73457483 C A ELN Missense_Mutation p.P138T 0.23 unknown(0) TCGA-VQ-A8PK-01 7 73458248 73458248 C A ELN Missense_Mutation p.P156Q 0.29 unknown(0) TCGA-VQ-A8PK-01 7 73459592 73459592 C T ELN Silent p.P170P 0.18 TCGA-VQ-A8PK-01 7 86416181 86416181 A C GRM3 Missense_Mutation p.K358T 0.33 tolerated(0.46) possibly_damaging(0.84) TCGA-VQ-A8PK-01 8 113402993 113402993 T G CSMD3 Missense_Mutation p.K1945T 0.24 tolerated(0.09) benign(0.065) TCGA-VQ-A8PK-01 8 139163909 139163909 A C FAM135B Missense_Mutation p.L937V 0.11 tolerated_low_confidence(0.65) benign(0.002) TCGA-VQ-A8PK-01 8 21767277 21767277 C T DOK2 Missense_Mutation p.A262T 0.51 tolerated(0.97) benign(0.001) TCGA-VQ-A8PK-01 8 32617811 32617811 T C NRG1 Silent p.T390T 0.06 TCGA-VQ-A8PK-01 8 3266998 3266998 A C CSMD1 Missense_Mutation p.V564G 0.60 benign(0.096) TCGA-VQ-A8PK-01 9 119737578 119737578 T G ASTN2 Missense_Mutation p.S549R 0.20 deleterious_low_confidence(0) unknown(0) TCGA-VQ-A8PK-01 9 27197493 27197493 T C TEK Missense_Mutation p.L602P 0.40 deleterious(0) probably_damaging(0.968) TCGA-VQ-A8PK-01 9 82188632 82188632 A C TLE4 Missense_Mutation p.K25T 0.43 deleterious(0) probably_damaging(0.944) TCGA-VQ-A8PK-01 X 10085315 10085315 G A WWC3 Missense_Mutation p.E406K 0.57 tolerated(0.14) benign(0.197) TCGA-VQ-A8PK-01 X 105178289 105178289 T G NRK Missense_Mutation p.S1119A 0.68 tolerated(0.3) benign(0.117) TCGA-VQ-A8PK-01 X 137717659 137717659 T G FGF13 Missense_Mutation p.K197T 0.57 tolerated(0.08) probably_damaging(0.982) TCGA-VQ-A8PK-01 X 138633258 138633258 T G F9 Silent p.T186T 0.12 TCGA-VQ-A8PK-01 X 50167348 50167348 C T DGKK RNA 0.50 TCGA-VQ-A8PK-01 X 55514455 55514455 T C USP51 Silent p.E306E 0.64 TCGA-VQ-A8PK-01 X 74318841 74318841 G A ABCB7 Missense_Mutation p.P131L 0.14 deleterious(0.03) probably_damaging(1) TCGA-VQ-A8PM-01 10 115608961 115608961 T G DCLRE1A Missense_Mutation p.K635Q 0.21 deleterious(0.01) benign(0.218) TCGA-VQ-A8PM-01 10 68687759 68687759 G A LRRTM3 Missense_Mutation p.G362D 0.15 tolerated(0.58) benign(0.005) TCGA-VQ-A8PM-01 10 75408254 75408254 G A SYNPO2L Nonsense_Mutation p.R386* 0.17 TCGA-VQ-A8PM-01 11 11906086 11906086 C T USP47 Missense_Mutation p.H38Y 0.06 tolerated_low_confidence(0.31) benign(0.175) TCGA-VQ-A8PM-01 11 18487328 18487328 A C LDHAL6A Missense_Mutation p.H130P 0.05 deleterious(0.01) benign(0.229) TCGA-VQ-A8PM-01 11 1973402 1973402 C T MRPL23 Silent p.N62N 0.13 TCGA-VQ-A8PM-01 11 20940835 20940835 A G NELL1 Silent p.Q238Q 0.08 TCGA-VQ-A8PM-01 11 27405913 27405913 C T LGR4 Missense_Mutation p.C220Y 0.15 deleterious(0) probably_damaging(0.976) TCGA-VQ-A8PM-01 11 95591781 95591781 G A MTMR2 Nonsense_Mutation p.R162* 0.09 TCGA-VQ-A8PM-01 12 51447570 51447570 G T LETMD1 Missense_Mutation p.D147Y 0.12 deleterious(0.03) probably_damaging(1) TCGA-VQ-A8PM-01 12 78513022 78513022 A C NAV3 Missense_Mutation p.T1016P 0.07 tolerated(0.18) probably_damaging(0.999) TCGA-VQ-A8PM-01 12 78530998 78530998 A G NAV3 Missense_Mutation p.S1495G 0.17 tolerated(0.08) benign(0.202) TCGA-VQ-A8PM-01 13 19751324 19751324 A C TUBA3C Missense_Mutation p.F267V 0.15 deleterious_low_confidence(0) probably_damaging(1) TCGA-VQ-A8PM-01 13 66878787 66878787 T G PCDH9 Nonstop_Mutation p.*1238Yext*26 0.11 TCGA-VQ-A8PM-01 15 41689014 41689014 A C NDUFAF1 Missense_Mutation p.F82V 0.11 deleterious(0) probably_damaging(0.945) TCGA-VQ-A8PM-01 15 42193248 42193248 C T EHD4 Silent p.T407T 0.23 TCGA-VQ-A8PM-01 15 96880682 96880682 G A NR2F2 Missense_Mutation p.R359K 0.13 deleterious(0) probably_damaging(0.992) TCGA-VQ-A8PM-01 17 10442657 10442657 T A MYH2 Silent p.V427V 0.19 TCGA-VQ-A8PM-01 17 33771769 33771769 G A SLFN13 Missense_Mutation p.L311F 0.06 tolerated(0.07) benign(0.109) TCGA-VQ-A8PM-01 17 72768136 72768136 G A NAT9 Missense_Mutation p.P151L 0.34 tolerated(0.12) benign(0.152) TCGA-VQ-A8PM-01 17 72927105 72927105 G A OTOP2 Missense_Mutation p.A459T 0.32 tolerated(0.5) benign(0.003) TCGA-VQ-A8PM-01 17 7578555 7578555 C T TP53 Splice_Site p.X126_splice 0.23 TCGA-VQ-A8PM-01 18 22804445 22804445 T G ZNF521 Missense_Mutation p.K1146T 0.20 tolerated(0.15) benign(0) TCGA-VQ-A8PM-01 18 43667197 43667197 G A ATP5A1 Missense_Mutation p.A318V 0.23 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-VQ-A8PM-01 18 44559962 44559962 A G TCEB3B Silent p.V558V 0.16 TCGA-VQ-A8PM-01 19 11447948 11447948 G A RAB3D Missense_Mutation p.A43V 0.16 tolerated(0.08) possibly_damaging(0.763) TCGA-VQ-A8PM-01 19 17440779 17440779 T C ANO8 Missense_Mutation p.K440E 0.15 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PM-01 19 43358346 43358346 A G PSG10P RNA 0.30 TCGA-VQ-A8PM-01 19 5587265 5587265 G A SAFB2 Missense_Mutation p.R951C 0.24 deleterious_low_confidence(0) possibly_damaging(0.689) TCGA-VQ-A8PM-01 19 57089069 57089069 T C ZNF470 Silent p.P424P 0.25 TCGA-VQ-A8PM-01 1 156926309 156926309 A T ARHGEF11 Missense_Mutation p.I525N 0.14 deleterious(0) possibly_damaging(0.833) TCGA-VQ-A8PM-01 1 156926310 156926310 T A ARHGEF11 Missense_Mutation p.I525F 0.14 deleterious(0) benign(0.273) TCGA-VQ-A8PM-01 1 15988209 15988209 C T RSC1A1 Missense_Mutation p.P616S 0.07 deleterious(0.01) probably_damaging(0.992) TCGA-VQ-A8PM-01 1 24416585 24416585 T C MYOM3 Missense_Mutation p.K486E 0.09 tolerated(0.72) benign(0.004) TCGA-VQ-A8PM-01 1 248129082 248129082 T G OR2AK2 Missense_Mutation p.L150R 0.20 tolerated(0.34) probably_damaging(0.977) TCGA-VQ-A8PM-01 1 4772110 4772110 G A AJAP1 Silent p.P60P 0.30 TCGA-VQ-A8PM-01 20 42232877 42232877 T A IFT52 Missense_Mutation p.V131D 0.09 deleterious(0) probably_damaging(0.95) TCGA-VQ-A8PM-01 21 46047122 46047122 G A KRTAP10-9 Missense_Mutation p.A12T 0.09 tolerated(0.56) unknown(0) TCGA-VQ-A8PM-01 22 50187780 50187780 T C BRD1 Missense_Mutation p.K754R 0.21 tolerated(0.17) benign(0.002) TCGA-VQ-A8PM-01 2 178299090 178299090 A C AGPS Missense_Mutation p.K129T 0.32 tolerated(0.43) benign(0.004) TCGA-VQ-A8PM-01 2 204591475 204591475 G A CD28 Missense_Mutation p.G58R 0.05 deleterious(0) probably_damaging(1) TCGA-VQ-A8PM-01 2 27361135 27361135 A C C2orf53 Silent p.T21T 0.26 TCGA-VQ-A8PM-01 2 47132596 47132596 T G MCFD2 3'UTR 0.24 TCGA-VQ-A8PM-01 3 11382133 11382133 G A ATG7 Missense_Mutation p.V302I 0.12 tolerated(0.1) benign(0.117) TCGA-VQ-A8PM-01 3 132247129 132247129 G - DNAJC13 Frame_Shift_Del p.V2160Lfs*7 0.16 TCGA-VQ-A8PM-01 3 47888100 47888100 G A DHX30 Missense_Mutation p.R513Q 0.06 tolerated(0.25) benign(0.031) TCGA-VQ-A8PM-01 3 53857457 53857457 C T CHDH Silent p.K193K 0.38 TCGA-VQ-A8PM-01 3 73433149 73433149 G T PDZRN3 Silent p.G856G 0.12 TCGA-VQ-A8PM-01 4 1940249 1940249 G A WHSC1 Silent p.K582K 0.17 TCGA-VQ-A8PM-01 5 148686978 148686978 C T AFAP1L1 Silent p.D183D 0.06 TCGA-VQ-A8PM-01 5 153390818 153390818 G A FAM114A2 Missense_Mutation p.P326S 0.06 deleterious(0.03) possibly_damaging(0.616) TCGA-VQ-A8PM-01 5 169805759 169805759 G A KCNMB1 Silent p.I175I 0.13 TCGA-VQ-A8PM-01 5 179676123 179676123 T C MAPK9 Missense_Mutation p.N156D 0.14 deleterious(0.03) possibly_damaging(0.888) TCGA-VQ-A8PM-01 6 133777749 133777749 G T EYA4 Silent p.T111T 0.12 TCGA-VQ-A8PM-01 6 155153260 155153260 A T SCAF8 Silent p.L849L 0.12 TCGA-VQ-A8PM-01 6 163510296 163510296 T G PACRG Missense_Mutation p.L157V 0.09 deleterious(0) probably_damaging(0.991) TCGA-VQ-A8PM-01 6 28268880 28268880 T G PGBD1 Missense_Mutation p.L417V 0.15 deleterious(0.02) probably_damaging(0.991) TCGA-VQ-A8PM-01 6 28333491 28333491 A G ZKSCAN3 Missense_Mutation p.K349R 0.12 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PM-01 6 35423873 35423873 C T FANCE Missense_Mutation p.R200C 0.13 deleterious(0.02) probably_damaging(0.939) TCGA-VQ-A8PM-01 7 84628742 84628742 A C SEMA3D 3'UTR 0.18 TCGA-VQ-A8PM-01 8 100479852 100479852 C G VPS13B Missense_Mutation p.S1219C 0.19 deleterious(0.03) probably_damaging(0.987) TCGA-VQ-A8PM-01 8 113599299 113599299 A G CSMD3 Missense_Mutation p.L1294P 0.15 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PM-01 8 27472322 27472322 G A CLU 5'UTR 0.08 TCGA-VQ-A8PM-01 9 107266644 107266644 T G OR13F1 Missense_Mutation p.M34R 0.17 deleterious(0.01) possibly_damaging(0.732) TCGA-VQ-A8PM-01 9 112182842 112182842 C T PTPN3 Missense_Mutation p.R392H 0.06 deleterious(0) possibly_damaging(0.618) TCGA-VQ-A8PM-01 X 24007016 24007016 T C KLHL15 Silent p.K279K 0.05 TCGA-VQ-A8PM-01 X 50377313 50377313 C T SHROOM4 Missense_Mutation p.R587H 0.29 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PO-01 10 100021967 100021967 G A LOXL4 Missense_Mutation p.P94L 0.08 tolerated(0.06) benign(0.128) TCGA-VQ-A8PO-01 10 104159909 104159909 C A NFKB2 Silent p.A514A 0.26 TCGA-VQ-A8PO-01 10 104416523 104416523 G A TRIM8 Silent p.V356V 0.30 TCGA-VQ-A8PO-01 10 104597168 104597168 T A CYP17A1 5'UTR 0.16 TCGA-VQ-A8PO-01 10 105752396 105752396 T C SLK Missense_Mutation p.V119A 0.15 tolerated(0.11) probably_damaging(0.975) TCGA-VQ-A8PO-01 10 105798186 105798186 C T COL17A1 Silent p.Q1016Q 0.15 TCGA-VQ-A8PO-01 10 115345561 115345561 C - HABP2 Frame_Shift_Del p.R462Afs*10 0.17 TCGA-VQ-A8PO-01 10 12150004 12150004 G A DHTKD1 Missense_Mutation p.R715H 0.25 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8PO-01 10 124605304 124605304 G A CUZD1 Missense_Mutation p.A19V 0.40 deleterious(0.04) benign(0.019) TCGA-VQ-A8PO-01 10 129183123 129183123 C T DOCK1 Silent p.L1272L 0.29 TCGA-VQ-A8PO-01 10 129207412 129207412 G T DOCK1 Missense_Mutation p.G1391C 0.27 deleterious(0) benign(0.035) TCGA-VQ-A8PO-01 10 131959215 131959215 C A GLRX3 Silent p.A144A 0.20 TCGA-VQ-A8PO-01 10 134014365 134014365 G T DPYSL4 Missense_Mutation p.G330C 0.35 deleterious(0.02) probably_damaging(0.988) TCGA-VQ-A8PO-01 10 135093358 135093358 G A TUBGCP2 Missense_Mutation p.A902V 0.33 tolerated(0.17) benign(0.053) TCGA-VQ-A8PO-01 10 15145317 15145317 G A RPP38 Missense_Mutation p.A2T 0.26 deleterious_low_confidence(0) possibly_damaging(0.827) TCGA-VQ-A8PO-01 10 15256535 15256535 G A FAM171A1 Missense_Mutation p.S351F 0.30 deleterious(0) benign(0.139) TCGA-VQ-A8PO-01 10 21074701 21074701 G A NEBL Missense_Mutation p.A1007V 0.19 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PO-01 10 30984920 30984920 T C SVILP1 RNA 0.35 TCGA-VQ-A8PO-01 10 31610436 31610436 C T ZEB1 Intron 0.21 TCGA-VQ-A8PO-01 10 34671501 34671501 T - PARD3 Frame_Shift_Del p.I456* 0.22 TCGA-VQ-A8PO-01 10 38120993 38120993 A G ZNF248 Silent p.H430H 0.10 TCGA-VQ-A8PO-01 10 45798988 45798988 G A OR13A1 Silent p.L295L 0.22 TCGA-VQ-A8PO-01 10 46282599 46282599 C T FAM21C Silent p.H976H 0.11 TCGA-VQ-A8PO-01 10 50724097 50724097 A - ERCC6-PGBD3 Frame_Shift_Del p.F823Sfs*21 0.21 TCGA-VQ-A8PO-01 10 51769465 51769465 A C AGAP6 Missense_Mutation p.E527A 0.09 deleterious(0.01) possibly_damaging(0.74) TCGA-VQ-A8PO-01 10 5498690 5498690 T C NET1 Silent p.S508S 0.05 TCGA-VQ-A8PO-01 10 5948548 5948548 C A FBXO18 Missense_Mutation p.L287M 0.14 deleterious(0.01) possibly_damaging(0.867) TCGA-VQ-A8PO-01 10 61112176 61112176 G C FAM13C Missense_Mutation p.P60A 0.13 tolerated_low_confidence(1) benign(0.005) TCGA-VQ-A8PO-01 10 61823946 61823946 T - ANK3 Frame_Shift_Del p.K4140Nfs*15 0.25 TCGA-VQ-A8PO-01 10 61932148 61932148 G A ANK3 Missense_Mutation p.A799V 0.20 probably_damaging(0.999) TCGA-VQ-A8PO-01 10 63852248 63852248 C G ARID5B Missense_Mutation p.A1009G 0.09 deleterious(0.01) probably_damaging(0.944) TCGA-VQ-A8PO-01 10 64979691 64979691 T C JMJD1C Missense_Mutation p.E167G 0.22 deleterious(0) benign(0.176) TCGA-VQ-A8PO-01 10 70097735 70097735 A C HNRNPH3 Missense_Mutation p.K78T 0.35 deleterious(0) unknown(0) TCGA-VQ-A8PO-01 10 70451211 70451211 G A TET1 Silent p.S2017S 0.21 TCGA-VQ-A8PO-01 10 70645583 70645583 C T STOX1 Silent p.G677G 0.09 TCGA-VQ-A8PO-01 10 73553375 73553375 C T CDH23 5'Flank 0.22 TCGA-VQ-A8PO-01 10 79742065 79742065 C A POLR3A Missense_Mutation p.Q1202H 0.32 deleterious(0.01) benign(0.081) TCGA-VQ-A8PO-01 10 8051258 8051258 C T TAF3 Missense_Mutation p.R845C 0.30 deleterious(0.04) benign(0) TCGA-VQ-A8PO-01 10 8051290 8051290 C T TAF3 Silent p.Y855Y 0.27 TCGA-VQ-A8PO-01 10 87966227 87966227 G T GRID1 Silent p.A138A 0.14 TCGA-VQ-A8PO-01 10 90774094 90774094 A - FAS Frame_Shift_Del p.A301Pfs*60 0.25 TCGA-VQ-A8PO-01 10 94822697 94822697 T C CYP26C1 Missense_Mutation p.L217P 0.31 deleterious(0) probably_damaging(0.933) TCGA-VQ-A8PO-01 10 94828212 94828212 G A CYP26C1 Missense_Mutation p.A443T 0.28 tolerated(0.4) benign(0.006) TCGA-VQ-A8PO-01 10 96313883 96313883 G A HELLS Missense_Mutation p.A52T 0.24 deleterious(0.02) benign(0.367) TCGA-VQ-A8PO-01 10 97779592 97779592 T - CC2D2B Intron 0.22 TCGA-VQ-A8PO-01 11 102826222 102826222 G A MMP13 Missense_Mutation p.R41C 0.28 deleterious(0) possibly_damaging(0.51) TCGA-VQ-A8PO-01 11 107309838 107309838 A G CWF19L2 Silent p.C214C 0.14 TCGA-VQ-A8PO-01 11 108535963 108535963 G A DDX10 Missense_Mutation p.S28N 0.14 tolerated(0.39) benign(0.002) TCGA-VQ-A8PO-01 11 108788854 108788854 T - DDX10 Intron 0.36 TCGA-VQ-A8PO-01 11 113860380 113860380 C T HTR3A Silent p.R482R 0.27 TCGA-VQ-A8PO-01 11 116692294 116692294 G A APOA4 Silent p.Y160Y 0.24 TCGA-VQ-A8PO-01 11 118074375 118074377 CTC - AMICA1 In_Frame_Del p.E180del 0.24 TCGA-VQ-A8PO-01 11 118773225 118773225 C T BCL9L Silent p.R409R 0.19 TCGA-VQ-A8PO-01 11 118773256 118773256 A G BCL9L Missense_Mutation p.L399S 0.25 probably_damaging(0.999) TCGA-VQ-A8PO-01 11 118965911 118965911 T G H2AFX Missense_Mutation p.E65A 0.31 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-VQ-A8PO-01 11 119050591 119050591 G A NLRX1 Missense_Mutation p.E621K 0.11 deleterious(0.01) probably_damaging(0.994) TCGA-VQ-A8PO-01 11 120008421 120008421 C T TRIM29 Missense_Mutation p.A107T 0.26 tolerated(0.26) benign(0.005) TCGA-VQ-A8PO-01 11 121490504 121490504 G A SORL1 Missense_Mutation p.V1923I 0.33 tolerated(0.26) benign(0.003) TCGA-VQ-A8PO-01 11 122830025 122830026 - A C11orf63 Frame_Shift_Ins p.N739Kfs*13 0.19 TCGA-VQ-A8PO-01 11 122928462 122928462 T A HSPA8 Missense_Mutation p.T641S 0.33 deleterious_low_confidence(0.02) benign(0.292) TCGA-VQ-A8PO-01 11 123777147 123777147 A - OR8D4 Frame_Shift_Del p.N5Tfs*5 0.21 TCGA-VQ-A8PO-01 11 123848299 123848299 C T OR10S1 Missense_Mutation p.A34T 0.23 tolerated(0.09) benign(0.005) TCGA-VQ-A8PO-01 11 126135269 126135269 C T SRPR Missense_Mutation p.R402H 0.10 deleterious(0.02) benign(0.273) TCGA-VQ-A8PO-01 11 126136453 126136453 C T SRPR Missense_Mutation p.C253Y 0.32 deleterious(0.03) benign(0.01) TCGA-VQ-A8PO-01 11 130131227 130131227 C T ZBTB44 Missense_Mutation p.R181Q 0.18 tolerated(0.19) probably_damaging(0.996) TCGA-VQ-A8PO-01 11 134022811 134022811 C A NCAPD3 3'UTR 0.24 TCGA-VQ-A8PO-01 11 1651737 1651737 T C KRTAP5-5 Missense_Mutation p.C223R 0.10 deleterious_low_confidence(0) unknown(0) TCGA-VQ-A8PO-01 11 17741822 17741822 C T MYOD1 Missense_Mutation p.R165C 0.33 deleterious(0) possibly_damaging(0.847) TCGA-VQ-A8PO-01 11 18308257 18308257 C T HPS5 Silent p.R906R 0.21 TCGA-VQ-A8PO-01 11 26582628 26582628 A G MUC15 Missense_Mutation p.L357P 0.22 deleterious(0) probably_damaging(0.955) TCGA-VQ-A8PO-01 11 32605393 32605393 G A EIF3M 5'UTR 0.28 TCGA-VQ-A8PO-01 11 45935931 45935931 G - PEX16 Frame_Shift_Del p.T211Pfs*44 0.20 TCGA-VQ-A8PO-01 11 46563625 46563625 C - AMBRA1 Frame_Shift_Del p.V558Wfs*84 0.11 TCGA-VQ-A8PO-01 11 47593178 47593178 A G PTPMT1 Silent p.T201T 0.12 TCGA-VQ-A8PO-01 11 47824988 47824988 A G NUP160 Splice_Site p.X925_splice 0.34 TCGA-VQ-A8PO-01 11 5012630 5012630 C A MMP26 Missense_Mutation p.P167T 0.26 tolerated(0.11) possibly_damaging(0.833) TCGA-VQ-A8PO-01 11 55065032 55065032 T - TRIM51HP RNA 0.32 TCGA-VQ-A8PO-01 11 55653610 55653610 A - TRIM51 Frame_Shift_Del p.M144Cfs*15 0.24 TCGA-VQ-A8PO-01 11 5655868 5655868 T C TRIM34 Missense_Mutation p.V176A 0.30 deleterious(0.02) benign(0.002) TCGA-VQ-A8PO-01 11 57559051 57559051 G A CTNND1 Missense_Mutation p.R34Q 0.25 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8PO-01 11 58034406 58034406 G A OR10W1 3'UTR 0.26 TCGA-VQ-A8PO-01 11 58893503 58893503 T C FAM111B Missense_Mutation p.F645L 0.30 deleterious(0) probably_damaging(0.988) TCGA-VQ-A8PO-01 11 608132 608132 C T PHRF1 Silent p.P891P 0.24 TCGA-VQ-A8PO-01 11 608262 608263 - C PHRF1 Frame_Shift_Ins p.E938Rfs*5 0.30 TCGA-VQ-A8PO-01 11 63992076 63992076 G A TRPT1 Silent p.C149C 0.21 TCGA-VQ-A8PO-01 11 64135721 64135721 G A RPS6KA4 Missense_Mutation p.A397T 0.29 tolerated(0.13) benign(0.017) TCGA-VQ-A8PO-01 11 64496389 64496389 G A RASGRP2 Missense_Mutation p.R573C 0.26 deleterious(0) probably_damaging(0.926) TCGA-VQ-A8PO-01 11 64847149 64847149 C T CDCA5 Silent p.P118P 0.19 TCGA-VQ-A8PO-01 11 64897648 64897648 C T SYVN1 Splice_Site p.X412_splice 0.14 TCGA-VQ-A8PO-01 11 65824806 65824806 C A SF3B2 Missense_Mutation p.P246H 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.753) TCGA-VQ-A8PO-01 11 66049775 66049775 G A CNIH2 Missense_Mutation p.D43N 0.27 deleterious(0) possibly_damaging(0.865) TCGA-VQ-A8PO-01 11 6650810 6650810 T C DCHS1 Splice_Site p.X1679_splice 0.21 TCGA-VQ-A8PO-01 11 67812445 67812445 C T TCIRG1 Silent p.A347A 0.28 TCGA-VQ-A8PO-01 11 68170948 68170948 C T LRP5 Intron 0.26 TCGA-VQ-A8PO-01 11 69458759 69458759 G T CCND1 Missense_Mutation p.D192Y 0.11 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PO-01 11 71724693 71724693 G A NUMA1 Missense_Mutation p.R1286C 0.20 benign(0.071) TCGA-VQ-A8PO-01 11 73022076 73022076 A G ARHGEF17 Missense_Mutation p.E798G 0.30 tolerated_low_confidence(0.62) benign(0.002) TCGA-VQ-A8PO-01 11 76750752 76750752 G A B3GNT6 Missense_Mutation p.D53N 0.14 tolerated(0.48) benign(0.084) TCGA-VQ-A8PO-01 11 76813927 76813927 G A OMP Silent p.P14P 0.27 TCGA-VQ-A8PO-01 11 792175 792175 T G SLC25A22 Missense_Mutation p.E262A 0.14 deleterious(0.01) probably_damaging(0.923) TCGA-VQ-A8PO-01 11 865592 865592 C A TSPAN4 Missense_Mutation p.A137D 0.27 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8PO-01 11 89028421 89028421 G T TYR Missense_Mutation p.A493S 0.17 tolerated(0.39) benign(0.003) TCGA-VQ-A8PO-01 11 93808359 93808359 G A HEPHL1 Silent p.A508A 0.28 TCGA-VQ-A8PO-01 12 102038481 102038481 A G MYBPC1 Missense_Mutation p.K266R 0.35 tolerated(0.15) possibly_damaging(0.531) TCGA-VQ-A8PO-01 12 102505924 102505924 G A NUP37 Silent p.S81S 0.10 TCGA-VQ-A8PO-01 12 104328067 104328067 T C HSP90B1 Splice_Site p.X248_splice 0.20 TCGA-VQ-A8PO-01 12 107486583 107486583 G A CRY1 Nonsense_Mutation p.R53* 0.30 TCGA-VQ-A8PO-01 12 107937778 107937778 C - BTBD11 Frame_Shift_Del p.L453Cfs*53 0.17 TCGA-VQ-A8PO-01 12 108086835 108086835 G A PWP1 Missense_Mutation p.G155D 0.14 deleterious(0) probably_damaging(0.989) TCGA-VQ-A8PO-01 12 108168939 108168939 G A ASCL4 5'UTR 0.30 TCGA-VQ-A8PO-01 12 109541302 109541302 A G UNG Silent p.R229R 0.17 TCGA-VQ-A8PO-01 12 109889578 109889578 T C KCTD10 Missense_Mutation p.N255S 0.28 tolerated(0.1) probably_damaging(0.995) TCGA-VQ-A8PO-01 12 113442830 113442830 A - OAS2 Frame_Shift_Del p.N426Tfs*14 0.20 TCGA-VQ-A8PO-01 12 113515260 113515260 C T DTX1 Silent p.Y97Y 0.32 TCGA-VQ-A8PO-01 12 113831804 113831804 C A SDS Missense_Mutation p.G224V 0.15 deleterious(0) probably_damaging(0.989) TCGA-VQ-A8PO-01 12 118199016 118199016 C T KSR2 Silent p.P262P 0.12 TCGA-VQ-A8PO-01 12 118650801 118650802 - TG TAOK3 Splice_Site p.X246_splice 0.12 TCGA-VQ-A8PO-01 12 120634654 120634654 A T RPLP0 Silent p.A292A 0.28 TCGA-VQ-A8PO-01 12 121019006 121019006 A G POP5 Silent p.D25D 0.24 TCGA-VQ-A8PO-01 12 123480139 123480139 G A PITPNM2 Silent p.G617G 0.24 TCGA-VQ-A8PO-01 12 125570882 125570882 G A AACS Missense_Mutation p.G122D 0.27 tolerated(0.14) benign(0.049) TCGA-VQ-A8PO-01 12 130648984 130648984 C T FZD10 Silent p.P499P 0.24 TCGA-VQ-A8PO-01 12 13102595 13102595 C T GPRC5D Missense_Mutation p.V242I 0.27 tolerated(0.56) benign(0.001) TCGA-VQ-A8PO-01 12 13716833 13716833 C T GRIN2B Silent p.P1113P 0.10 TCGA-VQ-A8PO-01 12 15702156 15702156 A G PTPRO Silent p.T811T 0.26 TCGA-VQ-A8PO-01 12 20874946 20874946 C A SLCO1C1 Silent p.P328P 0.16 TCGA-VQ-A8PO-01 12 21919331 21919331 C T KCNJ8 Missense_Mutation p.V201I 0.23 tolerated(0.19) benign(0.012) TCGA-VQ-A8PO-01 12 22487055 22487055 C T ST8SIA1 Missense_Mutation p.V38M 0.30 tolerated(0.07) benign(0.154) TCGA-VQ-A8PO-01 12 27844859 27844859 C T PPFIBP1 Nonsense_Mutation p.Q961* 0.16 TCGA-VQ-A8PO-01 12 27908478 27908478 T - MRPS35 3'UTR 0.36 TCGA-VQ-A8PO-01 12 2929283 2929283 C T ITFG2 Silent p.G146G 0.29 TCGA-VQ-A8PO-01 12 32480961 32480961 A G BICD1 Silent p.L524L 0.28 TCGA-VQ-A8PO-01 12 336823 336823 A G SLC6A13 Silent p.D281D 0.31 TCGA-VQ-A8PO-01 12 41966724 41966724 G T PDZRN4 Missense_Mutation p.D715Y 0.28 deleterious(0) probably_damaging(0.962) TCGA-VQ-A8PO-01 12 42499816 42499816 A - GXYLT1 Frame_Shift_Del p.L223Yfs*11 0.24 TCGA-VQ-A8PO-01 12 43777692 43777692 T C ADAMTS20 Missense_Mutation p.D1514G 0.23 tolerated(0.14) benign(0.026) TCGA-VQ-A8PO-01 12 48189004 48189004 C T HDAC7 Missense_Mutation p.R416H 0.22 tolerated(1) benign(0.003) TCGA-VQ-A8PO-01 12 49420109 49420109 G A KMT2D Missense_Mutation p.R5214C 0.22 unknown(0) TCGA-VQ-A8PO-01 12 50035777 50035777 C T PRPF40B Silent p.D618D 0.22 TCGA-VQ-A8PO-01 12 50344909 50344909 C T AQP2 Missense_Mutation p.A99V 0.26 tolerated(0.36) benign(0.026) TCGA-VQ-A8PO-01 12 52636809 52636809 A G KRT7 Missense_Mutation p.Q291R 0.07 tolerated(0.06) probably_damaging(0.995) TCGA-VQ-A8PO-01 12 53298764 53298764 A G KRT8 Missense_Mutation p.M29T 0.09 deleterious(0.03) benign(0.009) TCGA-VQ-A8PO-01 12 53875834 53875834 A G MAP3K12 Missense_Mutation p.M824T 0.15 deleterious_low_confidence(0) benign(0.161) TCGA-VQ-A8PO-01 12 54635433 54635433 T - CBX5 3'UTR 0.21 TCGA-VQ-A8PO-01 12 56641863 56641863 C T ANKRD52 Missense_Mutation p.G641D 0.29 deleterious(0.01) probably_damaging(0.984) TCGA-VQ-A8PO-01 12 56755127 56755127 T C APOF Missense_Mutation p.E288G 0.21 tolerated(0.13) benign(0.022) TCGA-VQ-A8PO-01 12 57490284 57490284 A G STAT6 3'UTR 0.20 TCGA-VQ-A8PO-01 12 59308046 59308046 A G LRIG3 Missense_Mutation p.V103A 0.16 deleterious(0.02) benign(0.042) TCGA-VQ-A8PO-01 12 65633792 65633792 A G LEMD3 Missense_Mutation p.M669V 0.26 deleterious(0) possibly_damaging(0.544) TCGA-VQ-A8PO-01 12 68551796 68551796 C T IFNG Missense_Mutation p.S88N 0.21 tolerated(0.5) benign(0.001) TCGA-VQ-A8PO-01 12 7067189 7067189 G A PTPN6 Silent p.Q438Q 0.11 TCGA-VQ-A8PO-01 12 72332824 72332824 C A TPH2 Missense_Mutation p.L20M 0.23 deleterious_low_confidence(0.02) probably_damaging(0.998) TCGA-VQ-A8PO-01 12 7249181 7249181 C - C1RL Frame_Shift_Del p.D424Mfs*37 0.17 TCGA-VQ-A8PO-01 12 8083181 8083181 A G SLC2A3 Missense_Mutation p.F190L 0.31 tolerated(1) benign(0.019) TCGA-VQ-A8PO-01 12 8200577 8200577 A C FOXJ2 Missense_Mutation p.Q306P 0.24 tolerated(0.31) benign(0) TCGA-VQ-A8PO-01 12 8375335 8375335 G T FAM90A1 Missense_Mutation p.R160S 0.12 tolerated(0.1) benign(0.007) TCGA-VQ-A8PO-01 12 85460574 85460574 G A LRRIQ1 Missense_Mutation p.V865I 0.18 tolerated(0.71) benign(0.036) TCGA-VQ-A8PO-01 12 85518064 85518064 A T LRRIQ1 Silent p.P1258P 0.34 TCGA-VQ-A8PO-01 12 88452655 88452655 C T CEP290 Missense_Mutation p.S2263N 0.13 benign(0.436) TCGA-VQ-A8PO-01 12 88500612 88500612 A T CEP290 Missense_Mutation p.I886N 0.26 possibly_damaging(0.795) TCGA-VQ-A8PO-01 12 91502077 91502077 C T LUM Missense_Mutation p.R227H 0.29 tolerated(0.11) benign(0.009) TCGA-VQ-A8PO-01 12 9161601 9161601 T - KLRG1 Frame_Shift_Del p.C131Afs*5 0.25 TCGA-VQ-A8PO-01 12 94694691 94694691 C A PLXNC1 Missense_Mutation p.P1415H 0.11 deleterious(0) probably_damaging(1) TCGA-VQ-A8PO-01 13 114507959 114507959 C T TMEM255B Silent p.P257P 0.33 TCGA-VQ-A8PO-01 13 114748718 114748718 T C RASA3 3'UTR 0.33 TCGA-VQ-A8PO-01 13 19751597 19751597 G - TUBA3C Frame_Shift_Del p.Q176Rfs*14 0.13 TCGA-VQ-A8PO-01 13 23808790 23808790 G A SGCG Missense_Mutation p.R79H 0.16 tolerated(0.12) benign(0.045) TCGA-VQ-A8PO-01 13 25671137 25671138 - A PABPC3 Frame_Shift_Ins p.V270Sfs*8 0.23 TCGA-VQ-A8PO-01 13 27259914 27259914 C T WASF3 Missense_Mutation p.R481C 0.17 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8PO-01 13 30782552 30782552 T - KATNAL1 3'UTR 0.40 TCGA-VQ-A8PO-01 13 32812057 32812057 C A FRY Missense_Mutation p.L2118M 0.32 deleterious(0.02) probably_damaging(0.978) TCGA-VQ-A8PO-01 13 32913559 32913559 A - BRCA2 Frame_Shift_Del p.K1691Nfs*15 0.22 TCGA-VQ-A8PO-01 13 36700036 36700036 C T DCLK1 Missense_Mutation p.R80Q 0.27 deleterious(0) unknown(0) TCGA-VQ-A8PO-01 13 38162023 38162023 T - POSTN Frame_Shift_Del p.N181Mfs*3 0.14 TCGA-VQ-A8PO-01 13 41814532 41814532 G A MTRF1 Silent p.D245D 0.17 TCGA-VQ-A8PO-01 13 41892982 41892982 A - NAA16 Frame_Shift_Del p.E63Kfs*38 0.10 TCGA-VQ-A8PO-01 13 43180938 43180938 T - TNFSF11 Frame_Shift_Del p.F281Lfs*36 0.12 TCGA-VQ-A8PO-01 13 45150003 45150003 C T TSC22D1 Missense_Mutation p.A70T 0.28 tolerated_low_confidence(0.07) probably_damaging(0.995) TCGA-VQ-A8PO-01 13 46652946 46652946 A G CPB2 Missense_Mutation p.Y159H 0.11 tolerated(0.06) probably_damaging(1) TCGA-VQ-A8PO-01 13 50489156 50489156 T - SPRYD7 3'UTR 0.18 TCGA-VQ-A8PO-01 13 52518290 52518290 G A ATP7B Silent p.S1066S 0.17 TCGA-VQ-A8PO-01 13 52542609 52542609 C T ATP7B Missense_Mutation p.A560T 0.16 tolerated(0.69) benign(0.001) TCGA-VQ-A8PO-01 13 60490362 60490362 C T DIAPH3 Missense_Mutation p.R731Q 0.22 deleterious(0) probably_damaging(0.993) TCGA-VQ-A8PO-01 13 76378425 76378426 - T LMO7 Intron 0.14 TCGA-VQ-A8PO-01 13 76423346 76423347 - A LMO7 Frame_Shift_Ins p.L1195Hfs*4 0.20 TCGA-VQ-A8PO-01 13 86367994 86367994 T C SLITRK6 3'UTR 0.50 TCGA-VQ-A8PO-01 13 88330355 88330355 G - SLITRK5 Frame_Shift_Del p.A906Qfs*20 0.15 TCGA-VQ-A8PO-01 13 96675973 96675973 A G UGGT2 Silent p.A94A 0.08 TCGA-VQ-A8PO-01 14 102468001 102468002 CT - DYNC1H1 Frame_Shift_Del p.P1511Vfs*6 0.17 TCGA-VQ-A8PO-01 14 104472750 104472751 - AG TDRD9 Frame_Shift_Ins p.D583Kfs*10 0.31 TCGA-VQ-A8PO-01 14 105412694 105412695 - G AHNAK2 Frame_Shift_Ins p.S3032Lfs*132 0.21 TCGA-VQ-A8PO-01 14 105414313 105414313 G A AHNAK2 Missense_Mutation p.S2492L 0.28 possibly_damaging(0.566) TCGA-VQ-A8PO-01 14 20483079 20483080 - T OR4K14 Frame_Shift_Ins p.L92Tfs*21 0.13 TCGA-VQ-A8PO-01 14 20781685 20781685 A G CCNB1IP1 Silent p.H191H 0.24 TCGA-VQ-A8PO-01 14 21822696 21822696 G A SUPT16H Silent p.S888S 0.31 TCGA-VQ-A8PO-01 14 22636807 22636807 A - TRAV30 Frame_Shift_Del p.K89Sfs*? 0.23 TCGA-VQ-A8PO-01 14 22788895 22788895 G T TRAV41 Missense_Mutation p.Q36H 0.23 tolerated(0.06) probably_damaging(0.934) TCGA-VQ-A8PO-01 14 23373495 23373495 C T RBM23 Missense_Mutation p.R302H 0.19 tolerated(0.06) benign(0.099) TCGA-VQ-A8PO-01 14 24633896 24633896 C T IRF9 Silent p.C241C 0.29 TCGA-VQ-A8PO-01 14 24704995 24704995 A G GMPR2 Missense_Mutation p.E105G 0.10 tolerated(0.13) benign(0.002) TCGA-VQ-A8PO-01 14 24708940 24708940 T C TINF2 3'UTR 0.16 TCGA-VQ-A8PO-01 14 24770890 24770890 T - NOP9 Frame_Shift_Del p.Q258Rfs*3 0.17 TCGA-VQ-A8PO-01 14 26917498 26917498 T C NOVA1 Silent p.G397G 0.18 TCGA-VQ-A8PO-01 14 26949284 26949284 T C NOVA1 Missense_Mutation p.I116V 0.12 deleterious(0.04) unknown(0) TCGA-VQ-A8PO-01 14 42356737 42356737 G A LRFN5 Silent p.R303R 0.26 TCGA-VQ-A8PO-01 14 50101017 50101017 A G DNAAF2 Missense_Mutation p.V284A 0.10 deleterious(0) probably_damaging(0.994) TCGA-VQ-A8PO-01 14 50272787 50272787 A C NEMF Silent p.A603A 0.21 TCGA-VQ-A8PO-01 14 51194439 51194439 C T NIN Intron 0.35 TCGA-VQ-A8PO-01 14 53513450 53513480 AATCAGTTTTAGGCCATTCATGTCCTTCAAG TCAGTTTTAGGCCATTCATGTCCTTCA DDHD1 3'UTR 0.10 TCGA-VQ-A8PO-01 14 55818965 55818965 T G FBXO34 Silent p.S619S 0.21 TCGA-VQ-A8PO-01 14 58604812 58604812 G T C14orf37 Missense_Mutation p.T422K 0.19 tolerated(0.62) possibly_damaging(0.742) TCGA-VQ-A8PO-01 14 59930981 59930981 G A GPR135 Missense_Mutation p.R322C 0.26 deleterious(0) probably_damaging(1) TCGA-VQ-A8PO-01 14 60574562 60574562 A G PCNXL4 Intron 0.08 TCGA-VQ-A8PO-01 14 63416865 63416865 A G KCNH5 Missense_Mutation p.M452T 0.13 deleterious(0.04) probably_damaging(0.916) TCGA-VQ-A8PO-01 14 64152858 64152859 - A SGPP1 Frame_Shift_Ins p.V431Cfs*19 0.19 TCGA-VQ-A8PO-01 14 64724030 64724030 C T ESR2 Nonsense_Mutation p.W335* 0.09 TCGA-VQ-A8PO-01 14 66028291 66028291 T C FUT8 Missense_Mutation p.W4R 0.13 tolerated_low_confidence(0.11) benign(0.015) TCGA-VQ-A8PO-01 14 73425488 73425488 A G DCAF4 Missense_Mutation p.D488G 0.22 deleterious(0) possibly_damaging(0.792) TCGA-VQ-A8PO-01 14 74205747 74205747 C T ELMSAN1 Missense_Mutation p.R322H 0.25 tolerated(0.33) possibly_damaging(0.655) TCGA-VQ-A8PO-01 14 77746741 77746741 G A POMT2 Silent p.N573N 0.24 TCGA-VQ-A8PO-01 14 81862515 81862515 C T STON2 Silent p.T32T 0.27 TCGA-VQ-A8PO-01 14 88945568 88945568 C T PTPN21 Missense_Mutation p.R736Q 0.37 tolerated_low_confidence(0.6) benign(0.064) TCGA-VQ-A8PO-01 14 88945715 88945715 G A PTPN21 Missense_Mutation p.P687L 0.38 tolerated_low_confidence(0.33) benign(0.002) TCGA-VQ-A8PO-01 14 89338011 89338011 G A TTC8 Missense_Mutation p.A390T 0.24 deleterious(0) benign(0.004) TCGA-VQ-A8PO-01 14 93653029 93653029 T - TMEM251 3'UTR 0.12 TCGA-VQ-A8PO-01 15 25430672 25430672 G A SNORD115-10 5'Flank 0.10 TCGA-VQ-A8PO-01 15 25963467 25963467 G A ATP10A Silent p.R481R 0.14 TCGA-VQ-A8PO-01 15 34023760 34023761 CT - RYR3 Frame_Shift_Del p.F2432Cfs*11 0.17 TCGA-VQ-A8PO-01 15 40698036 40698036 C T IVD Missense_Mutation p.T6I 0.21 deleterious_low_confidence(0.04) benign(0.006) TCGA-VQ-A8PO-01 15 41106492 41106492 G T ZFYVE19 3'UTR 0.27 TCGA-VQ-A8PO-01 15 41229637 41229637 A G DLL4 Missense_Mutation p.I655M 0.28 tolerated(0.09) probably_damaging(0.968) TCGA-VQ-A8PO-01 15 41795167 41795167 G A ITPKA Missense_Mutation p.G397S 0.40 deleterious(0) probably_damaging(1) TCGA-VQ-A8PO-01 15 42156224 42156224 T C SPTBN5 Splice_Site p.X2307_splice 0.23 TCGA-VQ-A8PO-01 15 42731587 42731587 T C ZNF106 Silent p.E1373E 0.11 TCGA-VQ-A8PO-01 15 45047151 45047151 T C TRIM69 Silent p.N20N 0.27 TCGA-VQ-A8PO-01 15 45393445 45393445 A G DUOX2 Missense_Mutation p.I960T 0.11 tolerated(0.54) benign(0.013) TCGA-VQ-A8PO-01 15 45427436 45427436 A C DUOX1 Silent p.R148R 0.12 TCGA-VQ-A8PO-01 15 45779743 45779743 C A SLC30A4 Missense_Mutation p.V328L 0.14 tolerated(0.57) benign(0.027) TCGA-VQ-A8PO-01 15 48539196 48539196 G A SLC12A1 Missense_Mutation p.A515T 0.13 deleterious(0) probably_damaging(1) TCGA-VQ-A8PO-01 15 48634180 48634180 A - DUT Intron 0.31 TCGA-VQ-A8PO-01 15 49048375 49048375 G A CEP152 Missense_Mutation p.R1024C 0.24 deleterious(0) probably_damaging(0.99) TCGA-VQ-A8PO-01 15 49426243 49426244 - A COPS2 Frame_Shift_Ins p.E267* 0.21 TCGA-VQ-A8PO-01 15 51806647 51806647 G T DMXL2 Missense_Mutation p.P879Q 0.12 tolerated(0.12) possibly_damaging(0.642) TCGA-VQ-A8PO-01 15 52901851 52901851 T C FAM214A Silent p.K420K 0.27 TCGA-VQ-A8PO-01 15 57734622 57734623 - A CGNL1 Frame_Shift_Ins p.I585Nfs*16 0.21 TCGA-VQ-A8PO-01 15 59180673 59180673 A T SLTM Silent p.S762S 0.28 TCGA-VQ-A8PO-01 15 65218275 65218275 C T ANKDD1A Missense_Mutation p.T126I 0.40 deleterious(0.02) possibly_damaging(0.694) TCGA-VQ-A8PO-01 15 65298507 65298507 A G MTFMT Missense_Mutation p.M279T 0.16 tolerated(0.23) benign(0.098) TCGA-VQ-A8PO-01 15 65471302 65471302 C T CLPX Missense_Mutation p.D110N 0.22 tolerated(0.14) benign(0.089) TCGA-VQ-A8PO-01 15 69018305 69018305 A G CORO2B Missense_Mutation p.N479D 0.15 tolerated_low_confidence(0.05) benign(0.001) TCGA-VQ-A8PO-01 15 71329587 71329587 T C LRRC49 Silent p.N596N 0.13 TCGA-VQ-A8PO-01 15 73528776 73528776 G A NEO1 Silent p.R460R 0.23 TCGA-VQ-A8PO-01 15 75047488 75047488 C T CYP1A2 3'UTR 0.29 TCGA-VQ-A8PO-01 15 75094676 75094676 T C CSK Missense_Mutation p.L392P 0.31 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PO-01 15 76170337 76170337 T C UBE2Q2 Missense_Mutation p.Y237H 0.24 deleterious(0.03) benign(0.021) TCGA-VQ-A8PO-01 15 76580267 76580267 G A ETFA Missense_Mutation p.A124V 0.25 deleterious(0) probably_damaging(0.927) TCGA-VQ-A8PO-01 15 83805233 83805233 G A TM6SF1 Missense_Mutation p.A308T 0.15 tolerated(0.2) probably_damaging(0.917) TCGA-VQ-A8PO-01 15 83805312 83805312 T - TM6SF1 Frame_Shift_Del p.L336* 0.29 TCGA-VQ-A8PO-01 16 1034960 1034960 C T SOX8 Silent p.G305G 0.25 TCGA-VQ-A8PO-01 16 11114151 11114151 G A CLEC16A Missense_Mutation p.A469T 0.43 tolerated(0.32) benign(0.012) TCGA-VQ-A8PO-01 16 11220025 11220025 C T CLEC16A Intron 0.25 TCGA-VQ-A8PO-01 16 1129430 1129430 G A SSTR5 Missense_Mutation p.A188T 0.29 deleterious(0) benign(0.004) TCGA-VQ-A8PO-01 16 12061810 12061810 T - TNFRSF17 3'UTR 0.38 TCGA-VQ-A8PO-01 16 14989492 14989492 G T NOMO1 Missense_Mutation p.R1220M 0.03 deleterious_low_confidence(0) unknown(0) TCGA-VQ-A8PO-01 16 15221987 15221987 T C RP11-1186N24.5 RNA 0.18 TCGA-VQ-A8PO-01 16 15714308 15714308 T - KIAA0430 Frame_Shift_Del p.K907Sfs*6 0.10 TCGA-VQ-A8PO-01 16 16248485 16248485 C A ABCC6 Missense_Mutation p.S1403I 0.18 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PO-01 16 19613031 19613031 G A C16orf62 Missense_Mutation p.R346H 0.14 tolerated(0.1) benign(0.004) TCGA-VQ-A8PO-01 16 20084901 20084901 G A GPR139 Missense_Mutation p.S13L 0.33 tolerated_low_confidence(0.35) benign(0) TCGA-VQ-A8PO-01 16 202939 202939 A G HBZ Missense_Mutation p.I11V 0.24 tolerated(1) benign(0.019) TCGA-VQ-A8PO-01 16 20966138 20966138 G T DNAH3 Missense_Mutation p.L3690I 0.08 tolerated(0.17) possibly_damaging(0.802) TCGA-VQ-A8PO-01 16 21222901 21222901 G T ZP2 5'UTR 0.16 TCGA-VQ-A8PO-01 16 2124283 2124283 T C TSC2 Missense_Mutation p.V813A 0.12 deleterious(0) benign(0.232) TCGA-VQ-A8PO-01 16 2130302 2130302 G A TSC2 Silent p.Q1178Q 0.25 TCGA-VQ-A8PO-01 16 2263882 2263882 G A PGP Silent p.T271T 0.31 TCGA-VQ-A8PO-01 16 23703541 23703541 C T ERN2 Missense_Mutation p.A786T 0.30 tolerated(0.53) benign(0.002) TCGA-VQ-A8PO-01 16 23716367 23716367 C T ERN2 Missense_Mutation p.G279S 0.29 deleterious(0.05) probably_damaging(0.962) TCGA-VQ-A8PO-01 16 28509238 28509238 C T APOBR Missense_Mutation p.A959V 0.34 tolerated(0.31) benign(0.055) TCGA-VQ-A8PO-01 16 28847296 28847296 C A ATXN2L Missense_Mutation p.P980T 0.22 deleterious(0.01) probably_damaging(0.919) TCGA-VQ-A8PO-01 16 28914202 28914202 T C ATP2A1 Missense_Mutation p.V905A 0.25 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PO-01 16 3063895 3063895 G - CLDN9 Frame_Shift_Del p.L180Sfs*196 0.16 TCGA-VQ-A8PO-01 16 30770557 30770557 A T C16orf93 Missense_Mutation p.D223E 0.25 deleterious(0) probably_damaging(0.95) TCGA-VQ-A8PO-01 16 30794656 30794656 C T ZNF629 Silent p.S331S 0.16 TCGA-VQ-A8PO-01 16 31004532 31004532 G A STX1B Silent p.N235N 0.09 TCGA-VQ-A8PO-01 16 31089280 31089280 G T ZNF646 Missense_Mutation p.E545D 0.21 deleterious(0.03) benign(0.083) TCGA-VQ-A8PO-01 16 31383060 31383060 C T ITGAX Silent p.V705V 0.25 TCGA-VQ-A8PO-01 16 31414917 31414917 G A ITGAD Missense_Mutation p.V219I 0.27 tolerated(0.41) benign(0.007) TCGA-VQ-A8PO-01 16 31927411 31927411 G A ZNF267 Missense_Mutation p.S614N 0.34 tolerated(0.71) benign(0.114) TCGA-VQ-A8PO-01 16 3339732 3339732 T C ZNF263 Missense_Mutation p.V409A 0.24 tolerated(0.38) benign(0.089) TCGA-VQ-A8PO-01 16 33647490 33647490 A C RP11-812E19.9 Missense_Mutation p.L37R 0.11 deleterious_low_confidence(0.01) probably_damaging(0.979) TCGA-VQ-A8PO-01 16 339452 339452 T - AXIN1 Frame_Shift_Del p.K817Rfs*11 0.14 TCGA-VQ-A8PO-01 16 417625 417625 C A MRPL28 3'UTR 0.19 TCGA-VQ-A8PO-01 16 55601070 55601070 C T CAPNS2 Silent p.D134D 0.05 TCGA-VQ-A8PO-01 16 57116387 57116387 A G NLRC5 Missense_Mutation p.R1850G 0.10 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PO-01 16 57950067 57950067 A C CNGB1 Missense_Mutation p.M728R 0.39 deleterious(0) possibly_damaging(0.682) TCGA-VQ-A8PO-01 16 58200581 58200581 C T CSNK2A2 Missense_Mutation p.R245H 0.19 deleterious(0.01) probably_damaging(0.966) TCGA-VQ-A8PO-01 16 58711247 58711247 T C SLC38A7 Silent p.P231P 0.15 TCGA-VQ-A8PO-01 16 66430010 66430010 A - CDH5 Frame_Shift_Del p.K424Rfs*20 0.25 TCGA-VQ-A8PO-01 16 66972072 66972072 C T CES2 Missense_Mutation p.P134L 0.12 tolerated(0.1) benign(0.012) TCGA-VQ-A8PO-01 16 67980163 67980163 G A SLC12A4 Missense_Mutation p.R842C 0.13 deleterious(0) possibly_damaging(0.886) TCGA-VQ-A8PO-01 16 68011246 68011246 A G DPEP3 Silent p.G340G 0.12 TCGA-VQ-A8PO-01 16 68012407 68012407 T C DPEP3 Silent p.S204S 0.29 TCGA-VQ-A8PO-01 16 68845649 68845649 G A CDH1 Missense_Mutation p.A299T 0.20 tolerated(0.2) possibly_damaging(0.553) TCGA-VQ-A8PO-01 16 70055735 70055735 A G PDXDC2P RNA 0.28 TCGA-VQ-A8PO-01 16 70289721 70289721 A G AARS Silent p.S732S 0.23 TCGA-VQ-A8PO-01 16 71488094 71488094 C T ZNF23 5'UTR 0.12 TCGA-VQ-A8PO-01 16 72832274 72832274 C T ZFHX3 Missense_Mutation p.R1436H 0.21 probably_damaging(0.991) TCGA-VQ-A8PO-01 16 77228502 77228502 G A MON1B Missense_Mutation p.R249H 0.10 tolerated(0.11) benign(0.052) TCGA-VQ-A8PO-01 16 79632743 79632743 T C MAF Missense_Mutation p.S353G 0.10 tolerated(0.14) benign(0.171) TCGA-VQ-A8PO-01 16 80574940 80574940 G A DYNLRB2 5'UTR 0.21 TCGA-VQ-A8PO-01 16 81219123 81219123 C T PKD1L2 5'Flank 0.28 TCGA-VQ-A8PO-01 16 830495 830495 C T MSLNL Missense_Mutation p.R169H 0.18 benign(0) TCGA-VQ-A8PO-01 16 88705648 88705648 C T IL17C Missense_Mutation p.P89L 0.28 deleterious(0) probably_damaging(0.956) TCGA-VQ-A8PO-01 17 1374574 1374574 C A MYO1C Missense_Mutation p.G693V 0.10 deleterious(0) possibly_damaging(0.853) TCGA-VQ-A8PO-01 17 1563276 1563276 T C PRPF8 Missense_Mutation p.D1602G 0.23 tolerated(0.08) possibly_damaging(0.579) TCGA-VQ-A8PO-01 17 15881273 15881273 T C ZSWIM7 3'UTR 0.27 TCGA-VQ-A8PO-01 17 15935625 15935625 C T NCOR1 Silent p.S2436S 0.35 TCGA-VQ-A8PO-01 17 15995285 15995285 A G NCOR1 Missense_Mutation p.S970P 0.18 possibly_damaging(0.826) TCGA-VQ-A8PO-01 17 1636863 1636863 G T WDR81 Missense_Mutation p.G1511V 0.24 tolerated(0.25) probably_damaging(0.956) TCGA-VQ-A8PO-01 17 18071006 18071006 C T MYO15A Missense_Mutation p.R3351C 0.29 unknown(0) TCGA-VQ-A8PO-01 17 18156691 18156691 T C FLII Missense_Mutation p.I313V 0.17 tolerated(0.06) benign(0.02) TCGA-VQ-A8PO-01 17 21731489 21731489 C - UBBP4 Frame_Shift_Del p.D191Ifs*35 0.22 TCGA-VQ-A8PO-01 17 2577537 2577537 T C PAFAH1B1 Silent p.A285A 0.11 TCGA-VQ-A8PO-01 17 26881985 26881985 G A PIGS Silent p.L426L 0.20 TCGA-VQ-A8PO-01 17 26900924 26900924 G A ALDOC Silent p.S276S 0.11 TCGA-VQ-A8PO-01 17 26901544 26901544 C T ALDOC Missense_Mutation p.D198N 0.26 tolerated(0.06) benign(0.109) TCGA-VQ-A8PO-01 17 26955453 26955453 T - KIAA0100 Frame_Shift_Del p.K1475Rfs*14 0.23 TCGA-VQ-A8PO-01 17 27308722 27308722 T C SEZ6 Missense_Mutation p.T131A 0.21 tolerated_low_confidence(0.07) benign(0.066) TCGA-VQ-A8PO-01 17 27382139 27382139 G A PIPOX Missense_Mutation p.R289H 0.18 tolerated(0.55) benign(0.001) TCGA-VQ-A8PO-01 17 28538328 28538328 A G SLC6A4 Splice_Site p.X439_splice 0.34 TCGA-VQ-A8PO-01 17 28778780 28778780 C T CPD Nonsense_Mutation p.R1041* 0.32 TCGA-VQ-A8PO-01 17 29663479 29663479 G T NF1 Missense_Mutation p.L2045F 0.32 deleterious(0) probably_damaging(0.986) TCGA-VQ-A8PO-01 17 34340126 34340126 G A CCL23 3'UTR 0.33 TCGA-VQ-A8PO-01 17 38189395 38189395 C T MED24 Missense_Mutation p.A246T 0.32 tolerated(0.15) benign(0.082) TCGA-VQ-A8PO-01 17 38252285 38252285 C T NR1D1 Missense_Mutation p.M220I 0.07 deleterious(0) possibly_damaging(0.838) TCGA-VQ-A8PO-01 17 38641255 38641255 G A TNS4 Silent p.P431P 0.20 TCGA-VQ-A8PO-01 17 38711020 38711020 C T CCR7 Missense_Mutation p.E371K 0.28 deleterious(0.01) probably_damaging(0.97) TCGA-VQ-A8PO-01 17 38856250 38856250 C A KRT24 Missense_Mutation p.M381I 0.26 deleterious(0.02) possibly_damaging(0.525) TCGA-VQ-A8PO-01 17 39635174 39635174 A C KRT35 Missense_Mutation p.L262R 0.12 deleterious(0) probably_damaging(1) TCGA-VQ-A8PO-01 17 39994124 39994124 C - KLHL10 5'UTR 0.19 TCGA-VQ-A8PO-01 17 40557172 40557172 A G PTRF Missense_Mutation p.F236L 0.10 deleterious(0) probably_damaging(0.916) TCGA-VQ-A8PO-01 17 4576257 4576257 T C PELP1 Missense_Mutation p.M677V 0.25 benign(0.001) TCGA-VQ-A8PO-01 17 46262093 46262093 T C SKAP1 Missense_Mutation p.S187G 0.27 tolerated(0.27) benign(0.05) TCGA-VQ-A8PO-01 17 46655329 46655329 G A HOXB4 Missense_Mutation p.P118L 0.16 tolerated(0.06) benign(0.098) TCGA-VQ-A8PO-01 17 46669815 46669815 A G HOXB5 Missense_Mutation p.M189T 0.19 deleterious(0.02) benign(0.379) TCGA-VQ-A8PO-01 17 47230193 47230193 G A B4GALNT2 Missense_Mutation p.V189I 0.16 deleterious(0.02) benign(0.028) TCGA-VQ-A8PO-01 17 47656587 47656587 G A NXPH3 Silent p.T228T 0.09 TCGA-VQ-A8PO-01 17 4836518 4836518 T - GP1BA Frame_Shift_Del p.F208Lfs*48 0.10 TCGA-VQ-A8PO-01 17 48433967 48433967 C - XYLT2 Frame_Shift_Del p.G529Afs*78 0.36 TCGA-VQ-A8PO-01 17 48940267 48940282 ATTCTCAAGGAGGTGA TTCTCAAGGAGGTG TOB1 3'UTR 0.11 TCGA-VQ-A8PO-01 17 5329570 5329570 T C RPAIN Missense_Mutation p.I147T 0.23 deleterious(0) possibly_damaging(0.779) TCGA-VQ-A8PO-01 17 55189185 55189185 G A AKAP1 Silent p.K625K 0.24 TCGA-VQ-A8PO-01 17 56059277 56059277 T C VEZF1 Missense_Mutation p.H250R 0.31 deleterious(0) possibly_damaging(0.777) TCGA-VQ-A8PO-01 17 58267980 58267980 C T USP32 Missense_Mutation p.A1196T 0.34 deleterious(0.03) probably_damaging(0.993) TCGA-VQ-A8PO-01 17 58740624 58740624 A - PPM1D Frame_Shift_Del p.N512Ifs*2 0.24 TCGA-VQ-A8PO-01 17 6012979 6012979 C - WSCD1 Frame_Shift_Del p.R303Gfs*125 0.24 TCGA-VQ-A8PO-01 17 6386943 6386943 G A PITPNM3 Silent p.L161L 0.17 TCGA-VQ-A8PO-01 17 65907841 65907841 T C BPTF Missense_Mutation p.C1281R 0.14 benign(0.012) TCGA-VQ-A8PO-01 17 66247039 66247039 G C AMZ2 Missense_Mutation p.V130L 0.07 deleterious(0.02) benign(0.248) TCGA-VQ-A8PO-01 17 6683980 6683980 G A FBXO39 Missense_Mutation p.G265R 0.25 tolerated(0.54) benign(0.099) TCGA-VQ-A8PO-01 17 7225275 7225275 T A NEURL4 Missense_Mutation p.E927V 0.31 tolerated(0.25) benign(0.259) TCGA-VQ-A8PO-01 17 7245767 7245767 G A ACAP1 Silent p.Q106Q 0.23 TCGA-VQ-A8PO-01 17 72916177 72916177 C T USH1G Missense_Mutation p.D252N 0.27 tolerated(0.38) probably_damaging(0.997) TCGA-VQ-A8PO-01 17 7324666 7324666 G - SPEM1 Frame_Shift_Del p.A226Rfs*35 0.11 TCGA-VQ-A8PO-01 17 73491063 73491063 C - KIAA0195 Frame_Shift_Del p.S895Pfs*13 0.28 TCGA-VQ-A8PO-01 17 74473745 74473745 A - RHBDF2 Frame_Shift_Del p.F294Lfs*6 0.13 TCGA-VQ-A8PO-01 17 77043889 77043889 G A C1QTNF1 Missense_Mutation p.V189M 0.23 deleterious(0) possibly_damaging(0.802) TCGA-VQ-A8PO-01 17 7720023 7720023 C T DNAH2 Silent p.G3288G 0.18 TCGA-VQ-A8PO-01 17 78184625 78184625 C T SGSH Missense_Mutation p.V379M 0.14 deleterious(0.04) possibly_damaging(0.74) TCGA-VQ-A8PO-01 17 79412070 79412070 C T RP11-1055B8.7 Missense_Mutation p.P901S 0.25 benign(0.046) TCGA-VQ-A8PO-01 17 79426552 79426552 T C RP11-1055B8.7 Missense_Mutation p.Y1943H 0.09 probably_damaging(0.998) TCGA-VQ-A8PO-01 17 7978988 7978988 C T ALOX12B Missense_Mutation p.V527M 0.23 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PO-01 17 80059546 80059546 G - FASN 5'Flank 0.11 TCGA-VQ-A8PO-01 17 8064124 8064124 A G VAMP2 3'UTR 0.08 TCGA-VQ-A8PO-01 17 9086250 9086250 C A NTN1 Missense_Mutation p.P459T 0.27 tolerated(0.24) possibly_damaging(0.908) TCGA-VQ-A8PO-01 18 10691247 10691247 T C PIEZO2 Missense_Mutation p.Y2329C 0.20 tolerated(0.08) possibly_damaging(0.865) TCGA-VQ-A8PO-01 18 14803802 14803802 A G ANKRD30B Missense_Mutation p.T755A 0.16 deleterious(0.03) benign(0.025) TCGA-VQ-A8PO-01 18 203146 203146 T - USP14 Frame_Shift_Del p.Y333Ifs*7 0.23 TCGA-VQ-A8PO-01 18 20596833 20596834 - A RBBP8 Frame_Shift_Ins p.E803Rfs*12 0.12 TCGA-VQ-A8PO-01 18 21121122 21121122 T C NPC1 Silent p.T808T 0.08 TCGA-VQ-A8PO-01 18 28647936 28647936 A T DSC2 3'UTR 0.22 TCGA-VQ-A8PO-01 18 32949340 32949340 C T ZNF396 Missense_Mutation p.E283K 0.20 tolerated(0.11) benign(0.001) TCGA-VQ-A8PO-01 18 32954056 32954056 A G ZNF396 Silent p.H67H 0.11 TCGA-VQ-A8PO-01 18 347237 347237 T - COLEC12 Frame_Shift_Del p.T129Pfs*25 0.22 TCGA-VQ-A8PO-01 18 44560764 44560764 C T TCEB3B Missense_Mutation p.G291D 0.05 tolerated(0.24) benign(0.074) TCGA-VQ-A8PO-01 18 47116931 47116931 T C LIPG 3'UTR 0.21 TCGA-VQ-A8PO-01 18 47369686 47369686 C T MYO5B Silent p.A1512A 0.27 TCGA-VQ-A8PO-01 18 51820174 51820174 C G POLI Silent p.L520L 0.30 TCGA-VQ-A8PO-01 18 52258497 52258497 A G DYNAP Missense_Mutation p.D21G 0.14 tolerated(0.11) possibly_damaging(0.908) TCGA-VQ-A8PO-01 18 5291963 5291963 G A ZBTB14 Missense_Mutation p.R82C 0.19 tolerated(0.12) probably_damaging(0.998) TCGA-VQ-A8PO-01 18 54448796 54448796 G T WDR7 Silent p.A1033A 0.12 TCGA-VQ-A8PO-01 18 55021721 55021721 T C ST8SIA3 Missense_Mutation p.W90R 0.09 possibly_damaging(0.716) TCGA-VQ-A8PO-01 18 56400658 56400658 G A MALT1 Missense_Mutation p.E418K 0.05 deleterious(0) probably_damaging(1) TCGA-VQ-A8PO-01 18 56939770 56939770 G A RAX Silent p.G122G 0.23 TCGA-VQ-A8PO-01 18 60036537 60036538 - C TNFRSF11A Frame_Shift_Ins p.R466Tfs*16 0.18 TCGA-VQ-A8PO-01 18 61264492 61264492 C T SERPINB13 Silent p.S357S 0.22 TCGA-VQ-A8PO-01 18 63511256 63511256 G C CDH7 Missense_Mutation p.G397A 0.12 deleterious(0.01) possibly_damaging(0.877) TCGA-VQ-A8PO-01 18 65180891 65180891 G A DSEL Missense_Mutation p.L329F 0.15 deleterious(0.01) possibly_damaging(0.865) TCGA-VQ-A8PO-01 18 72234511 72234511 A G CNDP1 Missense_Mutation p.E200G 0.13 deleterious(0) probably_damaging(1) TCGA-VQ-A8PO-01 18 72776181 72776181 G A ZNF407 Silent p.T2168T 0.40 TCGA-VQ-A8PO-01 18 74607061 74607061 C T ZNF236 Missense_Mutation p.R502C 0.22 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PO-01 19 10221495 10221495 A G PPAN Missense_Mutation p.D385G 0.20 deleterious(0) possibly_damaging(0.828) TCGA-VQ-A8PO-01 19 1054279 1054279 A G ABCA7 Missense_Mutation p.Q1222R 0.22 tolerated(0.73) benign(0) TCGA-VQ-A8PO-01 19 1085808 1085808 A C HMHA1 Missense_Mutation p.S1088R 0.10 tolerated_low_confidence(0.09) probably_damaging(0.922) TCGA-VQ-A8PO-01 19 10943800 10943800 C T TMED1 Silent p.L185L 0.14 TCGA-VQ-A8PO-01 19 11283773 11283773 G T KANK2 Missense_Mutation p.R707S 0.31 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8PO-01 19 11545913 11545913 A G CCDC151 5'UTR 0.13 TCGA-VQ-A8PO-01 19 13873568 13873568 C A CCDC130 Missense_Mutation p.L293M 0.21 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8PO-01 19 14088821 14088821 G T RFX1 Missense_Mutation p.S304R 0.11 tolerated(0.35) possibly_damaging(0.709) TCGA-VQ-A8PO-01 19 15558983 15558983 A T WIZ Missense_Mutation p.S46T 0.06 tolerated_low_confidence(0.15) benign(0.001) TCGA-VQ-A8PO-01 19 15918655 15918655 C T OR10H1 Missense_Mutation p.A65T 0.40 tolerated(0.13) benign(0.035) TCGA-VQ-A8PO-01 19 16318855 16318855 T C AP1M1 Missense_Mutation p.L98P 0.07 deleterious(0) probably_damaging(0.981) TCGA-VQ-A8PO-01 19 18235505 18235505 G A MAST3 Silent p.A304A 0.18 TCGA-VQ-A8PO-01 19 18279616 18279616 C T PIK3R2 Missense_Mutation p.T630M 0.18 tolerated(0.06) benign(0.264) TCGA-VQ-A8PO-01 19 19241066 19241066 C - TMEM161A Frame_Shift_Del p.G165Vfs*39 0.25 TCGA-VQ-A8PO-01 19 19371708 19371708 A G HAPLN4 Missense_Mutation p.V133A 0.32 deleterious(0) probably_damaging(0.952) TCGA-VQ-A8PO-01 19 19453437 19453437 G A MAU2 Missense_Mutation p.A277T 0.24 tolerated(0.41) possibly_damaging(0.65) TCGA-VQ-A8PO-01 19 21541900 21541900 G T ZNF738 5'UTR 0.29 TCGA-VQ-A8PO-01 19 22193610 22193610 G - ZNF208 5'UTR 0.20 TCGA-VQ-A8PO-01 19 2405402 2405402 C T TMPRSS9 Missense_Mutation p.A200V 0.27 deleterious(0.03) benign(0.009) TCGA-VQ-A8PO-01 19 31038955 31038955 G T ZNF536 Missense_Mutation p.G810V 0.25 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8PO-01 19 33697588 33697588 C A LRP3 Silent p.A558A 0.28 TCGA-VQ-A8PO-01 19 34818924 34818924 G A KIAA0355 Silent p.Q324Q 0.08 TCGA-VQ-A8PO-01 19 3532478 3532478 G A FZR1 Missense_Mutation p.V358M 0.15 deleterious(0) probably_damaging(0.981) TCGA-VQ-A8PO-01 19 36045885 36045885 A G ATP4A Missense_Mutation p.V807A 0.15 tolerated(0.41) benign(0.001) TCGA-VQ-A8PO-01 19 3612177 3612177 T C CACTIN Missense_Mutation p.Q674R 0.04 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8PO-01 19 36271669 36271669 C - ARHGAP33 Frame_Shift_Del p.P262Hfs*13 0.23 TCGA-VQ-A8PO-01 19 36357214 36357214 C - KIRREL2 Frame_Shift_Del p.C652Afs*79 0.33 TCGA-VQ-A8PO-01 19 36380795 36380795 C A NFKBID Missense_Mutation p.E295D 0.08 tolerated(0.29) benign(0.07) TCGA-VQ-A8PO-01 19 38877093 38877093 C - GGN Frame_Shift_Del p.G270Afs*20 0.24 TCGA-VQ-A8PO-01 19 38997007 38997007 G T RYR1 Missense_Mutation p.R2869L 0.17 benign(0.106) TCGA-VQ-A8PO-01 19 39423117 39423117 C T MRPS12 Missense_Mutation p.T65M 0.08 deleterious(0.01) probably_damaging(0.989) TCGA-VQ-A8PO-01 19 39913647 39913647 C T PLEKHG2 Silent p.P651P 0.23 TCGA-VQ-A8PO-01 19 40360974 40360974 G A FCGBP Missense_Mutation p.T5145M 0.24 possibly_damaging(0.608) TCGA-VQ-A8PO-01 19 40362909 40362909 C T FCGBP Missense_Mutation p.R5054Q 0.16 benign(0.121) TCGA-VQ-A8PO-01 19 40902070 40902070 G T PRX Missense_Mutation p.P730H 0.08 deleterious(0) probably_damaging(0.95) TCGA-VQ-A8PO-01 19 41235134 41235134 G A ITPKC Missense_Mutation p.R428Q 0.15 tolerated(0.06) possibly_damaging(0.576) TCGA-VQ-A8PO-01 19 41594900 41594900 G A CYP2A13 Missense_Mutation p.G83R 0.30 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PO-01 19 42865015 42865015 C T MEGF8 Silent p.F1792F 0.43 TCGA-VQ-A8PO-01 19 43358183 43358183 G A PSG10P RNA 0.13 TCGA-VQ-A8PO-01 19 43709623 43709623 A G PSG4 Splice_Site p.X22_splice 0.26 TCGA-VQ-A8PO-01 19 43965614 43965614 C T LYPD3 Silent p.G310G 0.27 TCGA-VQ-A8PO-01 19 43969808 43969808 C A LYPD3 5'UTR 0.33 TCGA-VQ-A8PO-01 19 44933030 44933030 C T ZNF229 Silent p.G642G 0.05 TCGA-VQ-A8PO-01 19 45033489 45033489 A G CEACAM20 RNA 0.33 TCGA-VQ-A8PO-01 19 45593777 45593777 T C GEMIN7 3'UTR 0.13 TCGA-VQ-A8PO-01 19 47879313 47879313 G A DHX34 Missense_Mutation p.V814I 0.20 tolerated(1) benign(0.02) TCGA-VQ-A8PO-01 19 48382305 48382305 C A SULT2A1 Missense_Mutation p.E185D 0.08 deleterious(0.03) possibly_damaging(0.578) TCGA-VQ-A8PO-01 19 48967938 48967938 C T KCNJ14 Silent p.D405D 0.06 TCGA-VQ-A8PO-01 19 49334997 49334997 A G HSD17B14 Silent p.P99P 0.08 TCGA-VQ-A8PO-01 19 49574073 49574073 A G KCNA7 Silent p.N206N 0.22 TCGA-VQ-A8PO-01 19 50365982 50365982 G A PNKP Missense_Mutation p.T277M 0.10 tolerated(0.14) benign(0.003) TCGA-VQ-A8PO-01 19 51645979 51645979 C T SIGLEC7 Missense_Mutation p.A118V 0.24 tolerated(0.08) benign(0.331) TCGA-VQ-A8PO-01 19 53456002 53456002 A G ZNF816 Splice_Site p.X64_splice 0.25 TCGA-VQ-A8PO-01 19 53572580 53572580 C T ZNF160 Missense_Mutation p.G403S 0.25 deleterious(0.04) possibly_damaging(0.52) TCGA-VQ-A8PO-01 19 53913889 53913889 C T ZNF765 3'UTR 0.10 TCGA-VQ-A8PO-01 19 54964807 54964807 C T LENG8 Missense_Mutation p.A133V 0.12 tolerated(0.15) benign(0.006) TCGA-VQ-A8PO-01 19 55147815 55147815 C T AC009892.10 Intron 0.50 TCGA-VQ-A8PO-01 19 57646264 57646264 T - ZIM3 3'UTR 0.08 TCGA-VQ-A8PO-01 19 57840704 57840704 C T ZNF543 3'UTR 0.12 TCGA-VQ-A8PO-01 19 57867782 57867782 T - ZNF304 Frame_Shift_Del p.F183Sfs*10 0.17 TCGA-VQ-A8PO-01 19 58058606 58058606 T C ZNF550 Missense_Mutation p.I295V 0.21 tolerated(0.16) benign(0.007) TCGA-VQ-A8PO-01 19 58153415 58153415 A C ZNF211 Missense_Mutation p.S586R 0.27 tolerated(0.6) benign(0.007) TCGA-VQ-A8PO-01 19 58265634 58265634 C T ZNF776 Missense_Mutation p.T379M 0.11 deleterious(0.01) benign(0.006) TCGA-VQ-A8PO-01 19 58723898 58723898 C T ZNF274 Missense_Mutation p.R450C 0.28 tolerated(0.17) probably_damaging(0.966) TCGA-VQ-A8PO-01 19 58927007 58927007 G C ZNF584 Missense_Mutation p.G96R 0.25 tolerated(0.35) benign(0.019) TCGA-VQ-A8PO-01 19 58929156 58929156 G A ZNF584 3'UTR 0.29 TCGA-VQ-A8PO-01 19 59063105 59063105 C A CHMP2A Missense_Mutation p.G194C 0.26 deleterious(0.01) unknown(0) TCGA-VQ-A8PO-01 19 6586024 6586024 G A CD70 3'UTR 0.29 TCGA-VQ-A8PO-01 19 7117298 7117298 G A INSR Silent p.S1306S 0.27 TCGA-VQ-A8PO-01 19 8152985 8152985 C - FBN3 Frame_Shift_Del p.C2152Lfs*10 0.09 TCGA-VQ-A8PO-01 19 8180493 8180493 G A FBN3 Silent p.I1248I 0.33 TCGA-VQ-A8PO-01 19 8609190 8609190 G A MYO1F Silent p.Y505Y 0.08 TCGA-VQ-A8PO-01 19 8656849 8656849 T G ADAMTS10 Missense_Mutation p.S576R 0.25 deleterious(0.04) benign(0.094) TCGA-VQ-A8PO-01 19 9070525 9070525 A G MUC16 Missense_Mutation p.S5641P 0.23 unknown(0) TCGA-VQ-A8PO-01 19 9075165 9075165 G A MUC16 Missense_Mutation p.A4094V 0.15 unknown(0) TCGA-VQ-A8PO-01 19 9868475 9868475 T A ZNF846 Missense_Mutation p.E426D 0.30 tolerated(0.15) benign(0.005) TCGA-VQ-A8PO-01 19 9940706 9940706 C T UBL5 3'UTR 0.19 TCGA-VQ-A8PO-01 1 101196842 101196842 C T VCAM1 Silent p.Y431Y 0.08 TCGA-VQ-A8PO-01 1 10714649 10714649 C T CASZ1 Splice_Site p.X556_splice 0.36 TCGA-VQ-A8PO-01 1 109560141 109560142 TT - WDR47 Frame_Shift_Del p.R81Vfs*17 0.19 TCGA-VQ-A8PO-01 1 111060049 111060049 G A KCNA10 Missense_Mutation p.P454L 0.33 deleterious(0) probably_damaging(1) TCGA-VQ-A8PO-01 1 11345907 11345907 G A UBIAD1 Missense_Mutation p.V246I 0.28 tolerated(0.11) benign(0.252) TCGA-VQ-A8PO-01 1 11850872 11850872 G T MTHFR Silent p.I612I 0.27 TCGA-VQ-A8PO-01 1 119427802 119427802 G T TBX15 Silent p.P348P 0.40 TCGA-VQ-A8PO-01 1 120301762 120301762 T - HMGCS2 Frame_Shift_Del p.I277Sfs*22 0.28 TCGA-VQ-A8PO-01 1 12071657 12071657 C T MFN2 3'UTR 0.10 TCGA-VQ-A8PO-01 1 12954957 12954957 T C PRAMEF10 Missense_Mutation p.D109G 0.28 tolerated(1) benign(0.007) TCGA-VQ-A8PO-01 1 13448402 13448402 C T PRAMEF13 Missense_Mutation p.G358D 0.21 tolerated(0.96) benign(0.008) TCGA-VQ-A8PO-01 1 145281581 145281581 C A NOTCH2NL Missense_Mutation p.L171I 0.08 tolerated(0.05) benign(0.143) TCGA-VQ-A8PO-01 1 147084820 147084820 T C BCL9 Silent p.C64C 0.20 TCGA-VQ-A8PO-01 1 149900796 149900796 A - MTMR11 3'UTR 0.12 TCGA-VQ-A8PO-01 1 151131331 151131331 G A TNFAIP8L2 Missense_Mutation p.R53Q 0.25 deleterious(0) probably_damaging(0.924) TCGA-VQ-A8PO-01 1 151503075 151503075 G A CGN Silent p.G808G 0.19 TCGA-VQ-A8PO-01 1 152060506 152060506 C A TCHHL1 Missense_Mutation p.Q38H 0.32 tolerated(0.06) probably_damaging(0.995) TCGA-VQ-A8PO-01 1 152080732 152080732 C T TCHH Missense_Mutation p.R1654H 0.27 unknown(0) TCGA-VQ-A8PO-01 1 153330854 153330854 T G S100A9 Missense_Mutation p.L32R 0.19 deleterious(0) probably_damaging(1) TCGA-VQ-A8PO-01 1 154458429 154458429 T C SHE Missense_Mutation p.I431V 0.11 deleterious(0.01) probably_damaging(0.966) TCGA-VQ-A8PO-01 1 155447926 155447926 A G ASH1L Missense_Mutation p.C1579R 0.10 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-VQ-A8PO-01 1 155451690 155451690 T - ASH1L Frame_Shift_Del p.K324Sfs*8 0.20 TCGA-VQ-A8PO-01 1 155451792 155451792 T - ASH1L Frame_Shift_Del p.K290Sfs*8 0.17 TCGA-VQ-A8PO-01 1 155717882 155717882 T C GON4L 3'Flank 0.08 TCGA-VQ-A8PO-01 1 155870251 155870251 T - RIT1 Frame_Shift_Del p.K213Nfs*12 0.23 TCGA-VQ-A8PO-01 1 156013901 156013901 G - UBQLN4 Frame_Shift_Del p.T339Pfs*58 0.35 TCGA-VQ-A8PO-01 1 156567873 156567873 C T GPATCH4 Missense_Mutation p.R101H 0.21 tolerated(0.2) benign(0.003) TCGA-VQ-A8PO-01 1 158912077 158912077 C T PYHIN1 Missense_Mutation p.T297M 0.34 tolerated(0.17) benign(0.002) TCGA-VQ-A8PO-01 1 159166222 159166222 T G CADM3 Missense_Mutation p.C288G 0.17 deleterious(0.01) probably_damaging(0.913) TCGA-VQ-A8PO-01 1 160136490 160136490 A G ATP1A4 Missense_Mutation p.E407G 0.24 deleterious(0.03) benign(0.149) TCGA-VQ-A8PO-01 1 160389299 160389299 G A VANGL2 Missense_Mutation p.V234M 0.13 deleterious(0) possibly_damaging(0.565) TCGA-VQ-A8PO-01 1 161011524 161011524 C - USF1 Frame_Shift_Del p.G130Vfs*33 0.17 TCGA-VQ-A8PO-01 1 16342140 16342140 G A HSPB7 Missense_Mutation p.R150W 0.21 deleterious(0) probably_damaging(0.948) TCGA-VQ-A8PO-01 1 16378736 16378736 G A CLCNKB Silent p.T484T 0.21 TCGA-VQ-A8PO-01 1 16532031 16532031 A G ARHGEF19 Splice_Site p.X527_splice 0.11 TCGA-VQ-A8PO-01 1 165322430 165322430 C T LMX1A Missense_Mutation p.R49Q 0.21 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PO-01 1 165389136 165389136 A C RXRG Missense_Mutation p.I138S 0.19 deleterious(0) probably_damaging(0.982) TCGA-VQ-A8PO-01 1 167852713 167852713 A C ADCY10 Missense_Mutation p.F328V 0.17 tolerated(0.34) possibly_damaging(0.597) TCGA-VQ-A8PO-01 1 173941665 173941665 T - RC3H1 Frame_Shift_Del p.G402Efs*21 0.22 TCGA-VQ-A8PO-01 1 176563716 176563716 C T PAPPA2 Missense_Mutation p.R326C 0.31 deleterious(0) probably_damaging(0.94) TCGA-VQ-A8PO-01 1 179320484 179320484 A - SOAT1 Frame_Shift_Del p.K496Sfs*7 0.25 TCGA-VQ-A8PO-01 1 179621190 179621190 A G TDRD5 Missense_Mutation p.N673S 0.14 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PO-01 1 182026325 182026325 C G ZNF648 Missense_Mutation p.G274A 0.25 tolerated(0.05) benign(0.014) TCGA-VQ-A8PO-01 1 182368808 182368808 G T TEDDM1 Missense_Mutation p.S271R 0.15 deleterious_low_confidence(0.01) benign(0.206) TCGA-VQ-A8PO-01 1 183387521 183387521 G T NMNAT2 5'UTR 0.30 TCGA-VQ-A8PO-01 1 185959534 185959534 T C HMCN1 Silent p.T1112T 0.23 TCGA-VQ-A8PO-01 1 186301361 186301361 T G TPR Missense_Mutation p.K1857T 0.13 benign(0.403) TCGA-VQ-A8PO-01 1 19062219 19062219 A G PAX7 Missense_Mutation p.T417A 0.33 tolerated_low_confidence(0.19) benign(0.011) TCGA-VQ-A8PO-01 1 200014574 200014574 T - NR5A2 Frame_Shift_Del p.F110Lfs*14 0.12 TCGA-VQ-A8PO-01 1 201687561 201687561 C T NAV1 Missense_Mutation p.R302C 0.24 deleterious(0) probably_damaging(0.984) TCGA-VQ-A8PO-01 1 203097925 203097925 T C ADORA1 5'UTR 0.13 TCGA-VQ-A8PO-01 1 204412671 204412671 C T PIK3C2B Silent p.L974L 0.25 TCGA-VQ-A8PO-01 1 204415226 204415226 A G PIK3C2B Missense_Mutation p.C846R 0.22 deleterious(0) possibly_damaging(0.769) TCGA-VQ-A8PO-01 1 205119864 205119864 A G DSTYK Missense_Mutation p.M804T 0.20 deleterious(0) possibly_damaging(0.898) TCGA-VQ-A8PO-01 1 206241677 206241677 C T C1orf186 Splice_Site p.X38_splice 0.19 TCGA-VQ-A8PO-01 1 207196163 207196163 T C C1orf116 Missense_Mutation p.S316G 0.12 tolerated(0.13) possibly_damaging(0.742) TCGA-VQ-A8PO-01 1 20987461 20987461 T C DDOST Missense_Mutation p.K77E 0.33 deleterious(0) benign(0.292) TCGA-VQ-A8PO-01 1 214504325 214504325 C T SMYD2 Silent p.S283S 0.13 TCGA-VQ-A8PO-01 1 215802234 215802234 C T USH2A Silent p.Q5147Q 0.18 TCGA-VQ-A8PO-01 1 21894605 21894605 G - ALPL Frame_Shift_Del p.G221Vfs*56 0.11 TCGA-VQ-A8PO-01 1 220318859 220318859 G A IARS2 Silent p.Q920Q 0.35 TCGA-VQ-A8PO-01 1 220327392 220327392 T - RAB3GAP2 Frame_Shift_Del p.N1188Mfs*7 0.08 TCGA-VQ-A8PO-01 1 220955201 220955201 T C MARC2 Silent p.I322I 0.17 TCGA-VQ-A8PO-01 1 221912763 221912763 G T DUSP10 Silent p.T108T 0.12 TCGA-VQ-A8PO-01 1 224612259 224612259 G A WDR26 Missense_Mutation p.P242L 0.25 deleterious(0.04) possibly_damaging(0.791) TCGA-VQ-A8PO-01 1 227071619 227071619 C T PSEN2 Missense_Mutation p.L119F 0.25 tolerated(0.08) probably_damaging(0.999) TCGA-VQ-A8PO-01 1 228509583 228509583 T G OBSCN Missense_Mutation p.L5971R 0.27 possibly_damaging(0.898) TCGA-VQ-A8PO-01 1 228598691 228598693 GCA - TRIM17 In_Frame_Del p.L237del 0.22 TCGA-VQ-A8PO-01 1 235323838 235323838 T - RBM34 Frame_Shift_Del p.K118Sfs*9 0.19 TCGA-VQ-A8PO-01 1 235345419 235345419 T - ARID4B Frame_Shift_Del p.T939Rfs*2 0.21 TCGA-VQ-A8PO-01 1 236399118 236399118 C T ERO1LB Missense_Mutation p.R215H 0.10 deleterious(0.03) probably_damaging(0.999) TCGA-VQ-A8PO-01 1 23696005 23696005 A G C1orf213 Missense_Mutation p.Q72R 0.12 tolerated_low_confidence(0.46) benign(0.145) TCGA-VQ-A8PO-01 1 23713824 23713824 G C TCEA3 Missense_Mutation p.T303S 0.18 deleterious(0) possibly_damaging(0.764) TCGA-VQ-A8PO-01 1 23713825 23713825 T C TCEA3 Missense_Mutation p.T303A 0.18 deleterious(0) possibly_damaging(0.562) TCGA-VQ-A8PO-01 1 23782432 23782432 G A ASAP3 Missense_Mutation p.T97I 0.18 deleterious(0) probably_damaging(0.994) TCGA-VQ-A8PO-01 1 242253062 242253062 A - PLD5 3'UTR 0.19 TCGA-VQ-A8PO-01 1 24411000 24411000 G A MYOM3 Missense_Mutation p.S643F 0.18 deleterious(0.01) benign(0.285) TCGA-VQ-A8PO-01 1 245006587 245006587 T - COX20 3'UTR 0.25 TCGA-VQ-A8PO-01 1 245851604 245851604 G A KIF26B Silent p.S1773S 0.24 TCGA-VQ-A8PO-01 1 24685021 24685021 T C STPG1 3'UTR 0.14 TCGA-VQ-A8PO-01 1 247031099 247031099 G A AHCTF1 Missense_Mutation p.P1044S 0.12 deleterious(0) probably_damaging(0.993) TCGA-VQ-A8PO-01 1 247068842 247068842 C G AHCTF1 Splice_Site p.X303_splice 0.32 TCGA-VQ-A8PO-01 1 247902848 247902848 T C OR14K1 Missense_Mutation p.V311A 0.36 tolerated(0.59) benign(0.001) TCGA-VQ-A8PO-01 1 25775375 25775375 T - TMEM57 Frame_Shift_Del p.F102Lfs*47 0.28 TCGA-VQ-A8PO-01 1 26299098 26299098 C T PAFAH2 Silent p.G345G 0.12 TCGA-VQ-A8PO-01 1 26366390 26366390 C A SLC30A2 Missense_Mutation p.G284V 0.22 deleterious(0.01) probably_damaging(0.995) TCGA-VQ-A8PO-01 1 27159002 27159002 T G ZDHHC18 Missense_Mutation p.F134V 0.13 deleterious(0.01) possibly_damaging(0.899) TCGA-VQ-A8PO-01 1 27436184 27436184 C T SLC9A1 Missense_Mutation p.V300M 0.22 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8PO-01 1 28209036 28209036 C T THEMIS2 Nonsense_Mutation p.Q401* 0.16 TCGA-VQ-A8PO-01 1 28564379 28564379 A - ATPIF1 Frame_Shift_Del p.K72Nfs*31 0.15 TCGA-VQ-A8PO-01 1 28920547 28920547 G - RAB42 Frame_Shift_Del p.G81Vfs*119 0.22 TCGA-VQ-A8PO-01 1 29475640 29475640 C T SRSF4 Missense_Mutation p.R256H 0.25 deleterious(0.03) possibly_damaging(0.522) TCGA-VQ-A8PO-01 1 3544108 3544108 G A TPRG1L Missense_Mutation p.R172H 0.08 deleterious(0.03) benign(0.097) TCGA-VQ-A8PO-01 1 3645988 3645988 A G TP73 Missense_Mutation p.Q391R 0.22 tolerated(0.06) benign(0.014) TCGA-VQ-A8PO-01 1 37949122 37949122 G T ZC3H12A Missense_Mutation p.E570D 0.34 tolerated(1) benign(0.002) TCGA-VQ-A8PO-01 1 43637558 43637558 A G EBNA1BP2 Missense_Mutation p.V105A 0.29 tolerated(0.23) benign(0.033) TCGA-VQ-A8PO-01 1 43805740 43805740 G A MPL Missense_Mutation p.G266S 0.35 tolerated(0.63) benign(0.001) TCGA-VQ-A8PO-01 1 44438171 44438171 G A DPH2 Missense_Mutation p.R477Q 0.27 deleterious(0.03) benign(0.01) TCGA-VQ-A8PO-01 1 45798340 45798340 C - MUTYH Frame_Shift_Del p.G196Afs*41 0.12 TCGA-VQ-A8PO-01 1 45809326 45809326 C T TOE1 Silent p.S495S 0.23 TCGA-VQ-A8PO-01 1 46494559 46494559 T - MAST2 Frame_Shift_Del p.F726Lfs*12 0.24 TCGA-VQ-A8PO-01 1 46746186 46746186 C T LRRC41 Silent p.Q601Q 0.29 TCGA-VQ-A8PO-01 1 51822313 51822313 A G EPS15 3'UTR 0.18 TCGA-VQ-A8PO-01 1 55223529 55223529 C T PARS2 Missense_Mutation p.A436T 0.27 tolerated(0.06) benign(0.031) TCGA-VQ-A8PO-01 1 55451941 55451941 A G TMEM61 Missense_Mutation p.S63G 0.14 tolerated(0.4) benign(0) TCGA-VQ-A8PO-01 1 55573067 55573067 G A USP24 Missense_Mutation p.T1536M 0.16 deleterious(0.01) benign(0.046) TCGA-VQ-A8PO-01 1 62327297 62327297 A G INADL Silent p.T799T 0.28 TCGA-VQ-A8PO-01 1 67896085 67896085 G - SERBP1 5'Flank 0.26 TCGA-VQ-A8PO-01 1 74797186 74797186 T - FPGT-TNNI3K Frame_Shift_Del p.F282Sfs*15 0.15 TCGA-VQ-A8PO-01 1 87329212 87329212 T C SEP15 Missense_Mutation p.K145R 0.31 tolerated(0.08) probably_damaging(0.986) TCGA-VQ-A8PO-01 1 89271414 89271414 T C PKN2 Intron 0.29 TCGA-VQ-A8PO-01 1 89430617 89430618 - T CCBL2 Frame_Shift_Ins p.L117Afs*7 0.19 TCGA-VQ-A8PO-01 1 91178010 91178010 C T BARHL2 Missense_Mutation p.M341I 0.25 deleterious(0.01) unknown(0) TCGA-VQ-A8PO-01 1 93170166 93170167 - C EVI5 Frame_Shift_Ins p.R140Kfs*4 0.16 TCGA-VQ-A8PO-01 1 979281 979281 C G AGRN Missense_Mutation p.P626R 0.17 tolerated(0.1) probably_damaging(0.988) TCGA-VQ-A8PO-01 1 979286 979286 C G AGRN Missense_Mutation p.P628A 0.12 tolerated(0.49) probably_damaging(0.959) TCGA-VQ-A8PO-01 1 99358582 99358582 A - LPPR5 3'UTR 0.22 TCGA-VQ-A8PO-01 20 10622322 10622322 G T JAG1 Missense_Mutation p.P901H 0.31 deleterious(0.02) benign(0.003) TCGA-VQ-A8PO-01 20 1460596 1460596 G A SIRPB2 Missense_Mutation p.T67I 0.21 tolerated(0.57) benign(0.002) TCGA-VQ-A8PO-01 20 17462487 17462487 C T PCSK2 Silent p.D563D 0.15 TCGA-VQ-A8PO-01 20 18165301 18165302 - A CSRP2BP Frame_Shift_Ins p.V683Sfs*11 0.22 TCGA-VQ-A8PO-01 20 2308983 2308983 C T TGM3 Silent p.D435D 0.29 TCGA-VQ-A8PO-01 20 24940300 24940300 C T CST7 Silent p.V130V 0.24 TCGA-VQ-A8PO-01 20 31022442 31022442 G - ASXL1 Frame_Shift_Del p.G645Vfs*58 0.32 TCGA-VQ-A8PO-01 20 32665017 32665017 A G RALY Missense_Mutation p.E281G 0.23 deleterious_low_confidence(0) benign(0.424) TCGA-VQ-A8PO-01 20 33345744 33345744 C T NCOA6 Silent p.Q269Q 0.33 TCGA-VQ-A8PO-01 20 34240328 34240328 C T RBM12 3'UTR 0.20 TCGA-VQ-A8PO-01 20 35125127 35125127 G A DLGAP4 Silent p.A556A 0.24 TCGA-VQ-A8PO-01 20 368715 368715 T C TRIB3 Silent p.L21L 0.35 TCGA-VQ-A8PO-01 20 36997743 36997743 G A LBP Missense_Mutation p.M362I 0.23 tolerated(0.4) benign(0.06) TCGA-VQ-A8PO-01 20 37356287 37356287 G A SLC32A1 Missense_Mutation p.A195T 0.20 tolerated(0.06) benign(0.067) TCGA-VQ-A8PO-01 20 40739024 40739024 T G PTPRT Missense_Mutation p.Q1068P 0.28 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PO-01 20 43048420 43048420 A G HNF4A Missense_Mutation p.I266V 0.15 tolerated(0.76) benign(0) TCGA-VQ-A8PO-01 20 43058338 43058338 C - HNF4A 3'UTR 0.31 TCGA-VQ-A8PO-01 20 44421379 44421381 ACA - DNTTIP1 In_Frame_Del p.T58del 0.32 TCGA-VQ-A8PO-01 20 44594306 44594306 G A ZNF335 Missense_Mutation p.R355W 0.26 deleterious(0) probably_damaging(1) TCGA-VQ-A8PO-01 20 46271057 46271059 CTC - NCOA3 In_Frame_Del p.L1061del 0.38 TCGA-VQ-A8PO-01 20 46307428 46307428 C T SULF2 Silent p.P395P 0.07 TCGA-VQ-A8PO-01 20 46365634 46365634 C T SULF2 Silent p.A76A 0.41 TCGA-VQ-A8PO-01 20 4680252 4680252 T C PRNP Missense_Mutation p.M129T 0.23 deleterious(0.01) benign(0.285) TCGA-VQ-A8PO-01 20 47649705 47649705 A C ARFGEF2 Missense_Mutation p.Q1776P 0.21 tolerated_low_confidence(0.21) benign(0) TCGA-VQ-A8PO-01 20 47688917 47688917 G A CSE1L Missense_Mutation p.R288Q 0.09 tolerated(0.15) benign(0.001) TCGA-VQ-A8PO-01 20 49195737 49195737 T C PTPN1 Silent p.D245D 0.09 TCGA-VQ-A8PO-01 20 49493149 49493149 T G BCAS4 3'UTR 0.08 TCGA-VQ-A8PO-01 20 49621048 49621048 G A KCNG1 Missense_Mutation p.A357V 0.25 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8PO-01 20 50721690 50721690 C T ZFP64 Silent p.P29P 0.24 TCGA-VQ-A8PO-01 20 52645403 52645403 G A BCAS1 Missense_Mutation p.A84V 0.24 deleterious(0) probably_damaging(0.981) TCGA-VQ-A8PO-01 20 5282907 5282907 G T PROKR2 Missense_Mutation p.L312I 0.25 tolerated(0.24) possibly_damaging(0.627) TCGA-VQ-A8PO-01 20 54974299 54974299 G A CSTF1 Missense_Mutation p.E308K 0.22 deleterious(0.05) benign(0.043) TCGA-VQ-A8PO-01 20 57484813 57484813 C T GNAS Missense_Mutation p.R908C 0.21 deleterious(0) probably_damaging(1) TCGA-VQ-A8PO-01 20 58443502 58443503 AC - SYCP2 Frame_Shift_Del p.C1318* 0.17 TCGA-VQ-A8PO-01 20 5903413 5903414 - A CHGB Frame_Shift_Ins p.E211Rfs*21 0.16 TCGA-VQ-A8PO-01 20 6031581 6031581 A G LRRN4 Missense_Mutation p.L235P 0.23 deleterious(0) probably_damaging(0.974) TCGA-VQ-A8PO-01 20 9401985 9401985 C A PLCB4 Silent p.T720T 0.13 TCGA-VQ-A8PO-01 20 9449235 9449235 G A PLCB4 Missense_Mutation p.R1077Q 0.29 deleterious(0.02) possibly_damaging(0.489) TCGA-VQ-A8PO-01 21 16340574 16340574 G C NRIP1 5'UTR 0.20 TCGA-VQ-A8PO-01 21 28304351 28304351 G A ADAMTS5 Missense_Mutation p.T674I 0.26 tolerated(0.11) probably_damaging(0.999) TCGA-VQ-A8PO-01 21 30714830 30714830 T C BACH1 Silent p.A629A 0.30 TCGA-VQ-A8PO-01 21 36081076 36081076 A - CLIC6 Frame_Shift_Del p.N565Tfs*15 0.16 TCGA-VQ-A8PO-01 21 38538620 38538620 G A TTC3 Silent p.V1368V 0.21 TCGA-VQ-A8PO-01 21 38884884 38884884 T - DYRK1A 3'UTR 0.29 TCGA-VQ-A8PO-01 21 40558989 40558989 A - BRWD1 Frame_Shift_Del p.L2309* 0.16 TCGA-VQ-A8PO-01 21 40585404 40585404 T C BRWD1 Intron 0.29 TCGA-VQ-A8PO-01 21 40783645 40783645 T - LCA5L Frame_Shift_Del p.V354Ffs*19 0.16 TCGA-VQ-A8PO-01 21 43160926 43160926 G A RIPK4 3'UTR 0.33 TCGA-VQ-A8PO-01 21 43256582 43256582 G A PRDM15 Missense_Mutation p.S759L 0.20 tolerated(0.06) probably_damaging(0.991) TCGA-VQ-A8PO-01 21 45540983 45540983 G T PWP2 Missense_Mutation p.A546S 0.24 tolerated(0.4) benign(0.286) TCGA-VQ-A8PO-01 21 45679414 45679414 G T DNMT3L Missense_Mutation p.L84I 0.29 tolerated(0.07) benign(0.093) TCGA-VQ-A8PO-01 21 45710773 45710773 G - AIRE Intron 0.28 TCGA-VQ-A8PO-01 21 45826495 45826495 T C TRPM2 Missense_Mutation p.F937L 0.18 deleterious(0) probably_damaging(0.923) TCGA-VQ-A8PO-01 21 47404309 47404309 C T COL6A1 Silent p.D118D 0.50 TCGA-VQ-A8PO-01 22 18562744 18562744 T C PEX26 Missense_Mutation p.V112A 0.20 tolerated(0.51) benign(0.015) TCGA-VQ-A8PO-01 22 20760378 20760378 G - ZNF74 Frame_Shift_Del p.V353Cfs*258 0.29 TCGA-VQ-A8PO-01 22 21989376 21989376 C A CCDC116 Missense_Mutation p.P342T 0.24 tolerated(0.09) benign(0.161) TCGA-VQ-A8PO-01 22 23742431 23742431 C T ZDHHC8P1 RNA 0.19 TCGA-VQ-A8PO-01 22 24451399 24451399 A G CABIN1 Silent p.P290P 0.29 TCGA-VQ-A8PO-01 22 26176120 26176120 G A MYO18B Silent p.S722S 0.32 TCGA-VQ-A8PO-01 22 26860295 26860295 A G HPS4 Missense_Mutation p.L434P 0.26 tolerated(0.2) benign(0.066) TCGA-VQ-A8PO-01 22 31795705 31795705 A C DRG1 Missense_Mutation p.E12D 0.09 deleterious(0.01) benign(0.011) TCGA-VQ-A8PO-01 22 32241080 32241080 A G DEPDC5 Missense_Mutation p.T951A 0.14 tolerated(0.56) benign(0.001) TCGA-VQ-A8PO-01 22 32302242 32302242 A G DEPDC5 Missense_Mutation p.Q1515R 0.09 deleterious(0.04) benign(0.208) TCGA-VQ-A8PO-01 22 32791107 32791107 A G RTCB Missense_Mutation p.V362A 0.17 tolerated(0.54) benign(0.04) TCGA-VQ-A8PO-01 22 32924872 32924872 G - SYN3 Frame_Shift_Del p.L407Sfs*23 0.15 TCGA-VQ-A8PO-01 22 36236319 36236319 T C RBFOX2 Intron 0.21 TCGA-VQ-A8PO-01 22 38028157 38028157 G A GGA1 Silent p.Q561Q 0.10 TCGA-VQ-A8PO-01 22 38379512 38379512 C T SOX10 Missense_Mutation p.V94I 0.45 tolerated(0.81) benign(0.347) TCGA-VQ-A8PO-01 22 41077541 41077541 T C MCHR1 Missense_Mutation p.I293T 0.36 deleterious(0.04) probably_damaging(0.998) TCGA-VQ-A8PO-01 22 50167965 50167965 G A BRD1 Silent p.A1031A 0.11 TCGA-VQ-A8PO-01 22 50664282 50664282 C T TUBGCP6 Missense_Mutation p.V642I 0.31 tolerated(0.3) benign(0.027) TCGA-VQ-A8PO-01 2 101009967 101009967 C T CHST10 Missense_Mutation p.A271T 0.31 tolerated(0.2) benign(0.243) TCGA-VQ-A8PO-01 2 101598699 101598699 G A NPAS2 Missense_Mutation p.A497T 0.33 tolerated(0.21) benign(0.099) TCGA-VQ-A8PO-01 2 105858983 105858983 G A GPR45 Missense_Mutation p.R223H 0.21 deleterious(0) probably_damaging(0.918) TCGA-VQ-A8PO-01 2 106717559 106717559 G A UXS1 Silent p.G313G 0.27 TCGA-VQ-A8PO-01 2 107040528 107040528 C A RGPD3 Missense_Mutation p.A1299S 0.27 tolerated(0.32) benign(0.208) TCGA-VQ-A8PO-01 2 108626828 108626828 C - SLC5A7 Frame_Shift_Del p.Q420Sfs*26 0.16 TCGA-VQ-A8PO-01 2 112725729 112725729 C A MERTK Missense_Mutation p.P287Q 0.13 deleterious(0) probably_damaging(1) TCGA-VQ-A8PO-01 2 113785645 113785645 G A IL36B Intron 0.14 TCGA-VQ-A8PO-01 2 116534851 116534851 C T DPP10 Missense_Mutation p.A434V 0.32 deleterious(0.02) benign(0.423) TCGA-VQ-A8PO-01 2 116594097 116594097 G T DPP10 Nonsense_Mutation p.E693* 0.23 TCGA-VQ-A8PO-01 2 121106973 121106973 C T INHBB Silent p.D249D 0.12 TCGA-VQ-A8PO-01 2 128046958 128046958 T A ERCC3 Missense_Mutation p.E259D 0.21 tolerated(0.76) benign(0.003) TCGA-VQ-A8PO-01 2 128186343 128186343 G - PROC Frame_Shift_Del p.M406Wfs*15 0.11 TCGA-VQ-A8PO-01 2 131103842 131103842 T C IMP4 Missense_Mutation p.L253P 0.13 deleterious(0.01) probably_damaging(0.994) TCGA-VQ-A8PO-01 2 135470826 135470826 A G TMEM163 Missense_Mutation p.L89S 0.14 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PO-01 2 135988440 135988440 T - ZRANB3 Frame_Shift_Del p.R533Dfs*3 0.19 TCGA-VQ-A8PO-01 2 139429151 139429151 T C NXPH2 Missense_Mutation p.N46D 0.07 tolerated_low_confidence(0.21) benign(0.026) TCGA-VQ-A8PO-01 2 145182381 145182381 C T ZEB2 Missense_Mutation p.A129T 0.29 tolerated(0.46) benign(0) TCGA-VQ-A8PO-01 2 148683686 148683686 A - ACVR2A Frame_Shift_Del p.K437Rfs*5 0.48 TCGA-VQ-A8PO-01 2 152551038 152551038 C A NEB Missense_Mutation p.D594Y 0.25 probably_damaging(0.988) TCGA-VQ-A8PO-01 2 155566260 155566260 T C KCNJ3 Missense_Mutation p.L283P 0.14 deleterious(0) probably_damaging(1) TCGA-VQ-A8PO-01 2 160076335 160076335 G A TANC1 Missense_Mutation p.R1212H 0.09 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PO-01 2 162279912 162279912 C - TBR1 Frame_Shift_Del p.S410Rfs*28 0.13 TCGA-VQ-A8PO-01 2 166771886 166771886 G A TTC21B Missense_Mutation p.R655W 0.31 deleterious(0) probably_damaging(1) TCGA-VQ-A8PO-01 2 167168228 167168228 G A SCN9A Silent p.V13V 0.27 TCGA-VQ-A8PO-01 2 168103737 168103737 A - XIRP2 Frame_Shift_Del p.D1948Mfs*5 0.16 TCGA-VQ-A8PO-01 2 169721406 169721406 A - NOSTRIN Frame_Shift_Del p.G542Afs*27 0.25 TCGA-VQ-A8PO-01 2 171675146 171675146 G A GAD1 Silent p.A15A 0.25 TCGA-VQ-A8PO-01 2 175431807 175431807 C T WIPF1 Missense_Mutation p.E483K 0.12 deleterious(0.01) probably_damaging(0.935) TCGA-VQ-A8PO-01 2 17697824 17697824 T - RAD51AP2 Frame_Shift_Del p.N620Ifs*2 0.21 TCGA-VQ-A8PO-01 2 178985973 178985973 G A RBM45 Missense_Mutation p.R247H 0.32 tolerated(0.46) probably_damaging(0.949) TCGA-VQ-A8PO-01 2 179537405 179537405 T C TTN Silent p.K11604K 0.17 TCGA-VQ-A8PO-01 2 190327257 190327257 C T WDR75 Missense_Mutation p.R276C 0.25 deleterious(0) probably_damaging(0.932) TCGA-VQ-A8PO-01 2 190584370 190584370 T C ANKAR Missense_Mutation p.L766S 0.17 deleterious(0) probably_damaging(1) TCGA-VQ-A8PO-01 2 201438189 201438189 A G SGOL2 Silent p.L1040L 0.24 TCGA-VQ-A8PO-01 2 201822217 201822217 T - ORC2 Frame_Shift_Del p.I49* 0.19 TCGA-VQ-A8PO-01 2 201862181 201862181 G A FAM126B Missense_Mutation p.R205W 0.11 deleterious(0.01) possibly_damaging(0.888) TCGA-VQ-A8PO-01 2 20402090 20402090 C - SDC1 3'UTR 0.34 TCGA-VQ-A8PO-01 2 20403918 20403918 C T SDC1 Missense_Mutation p.A95T 0.30 tolerated(0.43) benign(0.095) TCGA-VQ-A8PO-01 2 208866300 208866300 T C PLEKHM3 Missense_Mutation p.T22A 0.10 tolerated(0.27) benign(0.017) TCGA-VQ-A8PO-01 2 209194581 209194581 A G PIKFYVE Silent p.E1245E 0.20 TCGA-VQ-A8PO-01 2 216960568 216960568 G A TMEM169 5'UTR 0.40 TCGA-VQ-A8PO-01 2 219292693 219292693 G A VIL1 Missense_Mutation p.R118Q 0.14 tolerated(0.13) benign(0.009) TCGA-VQ-A8PO-01 2 219566747 219566747 G A STK36 3'UTR 0.20 TCGA-VQ-A8PO-01 2 220113186 220113186 G A STK16 Missense_Mutation p.V275M 0.21 deleterious(0.01) possibly_damaging(0.848) TCGA-VQ-A8PO-01 2 220506405 220506405 T C SLC4A3 Silent p.D1245D 0.21 TCGA-VQ-A8PO-01 2 228004878 228004878 C T COL4A4 Missense_Mutation p.R64Q 0.21 probably_damaging(0.997) TCGA-VQ-A8PO-01 2 228172486 228172486 C A COL4A3 Missense_Mutation p.P1438H 0.10 unknown(0) TCGA-VQ-A8PO-01 2 228892200 228892200 C A SPHKAP Missense_Mutation p.Q102H 0.27 deleterious(0) probably_damaging(0.984) TCGA-VQ-A8PO-01 2 232393519 232393519 G A NMUR1 Silent p.F71F 0.21 TCGA-VQ-A8PO-01 2 232578104 232578104 A - PTMA 3'UTR 0.14 TCGA-VQ-A8PO-01 2 232880298 232880298 C T DIS3L2 Nonsense_Mutation p.R43* 0.16 TCGA-VQ-A8PO-01 2 234580971 234580971 A - UGT1A9 Frame_Shift_Del p.K132Nfs*2 0.18 TCGA-VQ-A8PO-01 2 236945333 236945333 C T AGAP1 Nonsense_Mutation p.Q592* 0.28 TCGA-VQ-A8PO-01 2 238274478 238274478 A G COL6A3 Missense_Mutation p.F1901L 0.25 benign(0.147) TCGA-VQ-A8PO-01 2 239160358 239160358 C T PER2 Silent p.T1052T 0.09 TCGA-VQ-A8PO-01 2 242007271 242007271 G A SNED1 Missense_Mutation p.V1035I 0.24 tolerated(0.09) benign(0.379) TCGA-VQ-A8PO-01 2 25062854 25062854 C - ADCY3 Frame_Shift_Del p.V415Cfs*27 0.22 TCGA-VQ-A8PO-01 2 26426963 26426963 C T HADHA Silent p.A396A 0.15 TCGA-VQ-A8PO-01 2 26799023 26799023 G T C2orf70 Nonsense_Mutation p.E110* 0.28 TCGA-VQ-A8PO-01 2 27607726 27607726 G T PPM1G Silent p.G213G 0.16 TCGA-VQ-A8PO-01 2 27804914 27804914 C A C2orf16 Silent p.P1825P 0.15 TCGA-VQ-A8PO-01 2 29293821 29293821 T C C2orf71 Missense_Mutation p.R1103G 0.27 tolerated(0.21) benign(0.009) TCGA-VQ-A8PO-01 2 31489551 31489551 A C EHD3 Missense_Mutation p.K530T 0.13 deleterious(0) probably_damaging(0.985) TCGA-VQ-A8PO-01 2 39552904 39552904 C T MAP4K3 Silent p.P258P 0.15 TCGA-VQ-A8PO-01 2 44053538 44053538 G A ABCG5 Missense_Mutation p.R253C 0.24 deleterious(0) probably_damaging(0.992) TCGA-VQ-A8PO-01 2 44508589 44508589 T C SLC3A1 Missense_Mutation p.L225S 0.25 tolerated(0.26) benign(0.183) TCGA-VQ-A8PO-01 2 45236195 45236195 C T SIX2 Missense_Mutation p.E19K 0.14 deleterious(0.04) possibly_damaging(0.641) TCGA-VQ-A8PO-01 2 47613742 47613742 T C EPCAM Missense_Mutation p.L312P 0.13 tolerated(0.1) benign(0.02) TCGA-VQ-A8PO-01 2 48809199 48809199 A - STON1-GTF2A1L Frame_Shift_Del p.K478Rfs*14 0.15 TCGA-VQ-A8PO-01 2 51255219 51255219 C T NRXN1 Missense_Mutation p.G65S 0.38 tolerated(0.11) possibly_damaging(0.542) TCGA-VQ-A8PO-01 2 54127048 54127048 C T PSME4 Missense_Mutation p.R1131H 0.31 tolerated(0.47) benign(0.016) TCGA-VQ-A8PO-01 2 54856151 54856151 C T SPTBN1 Missense_Mutation p.A627V 0.29 deleterious(0.02) possibly_damaging(0.74) TCGA-VQ-A8PO-01 2 54895525 54895525 C T SPTBN1 Missense_Mutation p.A2305V 0.35 tolerated(0.1) possibly_damaging(0.597) TCGA-VQ-A8PO-01 2 71797831 71797831 T C DYSF Missense_Mutation p.L1063P 0.26 tolerated(0.34) benign(0.003) TCGA-VQ-A8PO-01 2 73478365 73478365 G A CCT7 Silent p.V405V 0.19 TCGA-VQ-A8PO-01 2 74273610 74273610 C T TET3 Missense_Mutation p.A54V 0.29 tolerated(0.33) benign(0.075) TCGA-VQ-A8PO-01 2 85835868 85835868 A G C2orf68 3'UTR 0.27 TCGA-VQ-A8PO-01 2 85857971 85857971 T A USP39 Missense_Mutation p.L284H 0.21 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PO-01 2 97031731 97031731 C T NCAPH Missense_Mutation p.P606S 0.26 tolerated(0.52) benign(0.023) TCGA-VQ-A8PO-01 2 98914423 98914423 G A VWA3B Missense_Mutation p.G1071R 0.18 deleterious(0) probably_damaging(0.921) TCGA-VQ-A8PO-01 2 99013599 99013599 A G CNGA3 Missense_Mutation p.M656V 0.34 tolerated(0.31) benign(0.007) TCGA-VQ-A8PO-01 3 113878639 113878639 C A DRD3 Missense_Mutation p.A116S 0.16 tolerated(0.11) probably_damaging(0.999) TCGA-VQ-A8PO-01 3 115439837 115439837 C T GAP43 3'UTR 0.89 TCGA-VQ-A8PO-01 3 119328379 119328379 G A PLA1A Missense_Mutation p.G173D 0.20 deleterious(0) probably_damaging(1) TCGA-VQ-A8PO-01 3 121209070 121209070 A C POLQ Missense_Mutation p.L903R 0.33 tolerated(0.33) benign(0.439) TCGA-VQ-A8PO-01 3 122003092 122003092 C T CASR Missense_Mutation p.T774M 0.11 deleterious(0) probably_damaging(0.991) TCGA-VQ-A8PO-01 3 122247215 122247215 T C PARP9 Missense_Mutation p.D854G 0.27 deleterious_low_confidence(0.01) probably_damaging(0.922) TCGA-VQ-A8PO-01 3 122631064 122631064 C T SEMA5B Missense_Mutation p.G1005R 0.21 deleterious(0) probably_damaging(0.983) TCGA-VQ-A8PO-01 3 124356032 124356032 C A KALRN 5'UTR 0.09 TCGA-VQ-A8PO-01 3 126736333 126736333 C T PLXNA1 Silent p.R1114R 0.25 TCGA-VQ-A8PO-01 3 129293181 129293181 C T PLXND1 Missense_Mutation p.A895T 0.42 tolerated(0.39) benign(0.001) TCGA-VQ-A8PO-01 3 15493079 15493079 T C COLQ 3'UTR 0.21 TCGA-VQ-A8PO-01 3 155547680 155547680 T C SLC33A1 Missense_Mutation p.S427G 0.14 deleterious(0.05) possibly_damaging(0.756) TCGA-VQ-A8PO-01 3 164786909 164786909 A G SI Silent p.D110D 0.13 TCGA-VQ-A8PO-01 3 167051634 167051634 A G ZBBX Missense_Mutation p.L223P 0.23 tolerated(0.17) benign(0.065) TCGA-VQ-A8PO-01 3 168834429 168834430 CA - MECOM Frame_Shift_Del p.C287Wfs*12 0.18 TCGA-VQ-A8PO-01 3 169511514 169511514 T - LRRC34 Frame_Shift_Del p.K435Sfs*26 0.15 TCGA-VQ-A8PO-01 3 172607206 172607206 T C SPATA16 3'UTR 0.22 TCGA-VQ-A8PO-01 3 172674565 172674565 T C SPATA16 Missense_Mutation p.Y328C 0.22 deleterious(0) possibly_damaging(0.878) TCGA-VQ-A8PO-01 3 181430208 181430208 C T SOX2 Silent p.G20G 0.36 TCGA-VQ-A8PO-01 3 183388834 183388834 G A KLHL24 Missense_Mutation p.G413S 0.30 deleterious(0) probably_damaging(1) TCGA-VQ-A8PO-01 3 183689544 183689544 G A ABCC5 Missense_Mutation p.S523F 0.34 tolerated(0.55) benign(0.001) TCGA-VQ-A8PO-01 3 184052766 184052766 G - EIF4G1 3'UTR 0.38 TCGA-VQ-A8PO-01 3 186503800 186503800 A G EIF4A2 Silent p.T159T 0.24 TCGA-VQ-A8PO-01 3 190345193 190345194 - A IL1RAP Frame_Shift_Ins p.P289Tfs*2 0.23 TCGA-VQ-A8PO-01 3 193360775 193360775 A G OPA1 Silent p.L396L 0.36 TCGA-VQ-A8PO-01 3 194118393 194118393 C T GP5 Missense_Mutation p.V207M 0.08 tolerated(0.1) benign(0.139) TCGA-VQ-A8PO-01 3 196554179 196554179 G - PAK2 Frame_Shift_Del p.G489Vfs*12 0.12 TCGA-VQ-A8PO-01 3 196748333 196748333 C T MFI2 Silent p.A218A 0.15 TCGA-VQ-A8PO-01 3 197562589 197562589 G A LRCH3 Missense_Mutation p.A383T 0.29 tolerated(0.98) benign(0.005) TCGA-VQ-A8PO-01 3 197765587 197765587 G A LMLN 3'UTR 0.18 TCGA-VQ-A8PO-01 3 19961994 19961994 C A EFHB Intron 0.52 TCGA-VQ-A8PO-01 3 20194018 20194018 T - KAT2B 3'UTR 0.32 TCGA-VQ-A8PO-01 3 33686307 33686307 G A CLASP2 Silent p.S268S 0.11 TCGA-VQ-A8PO-01 3 33906856 33906856 C T PDCD6IP Missense_Mutation p.T794M 0.13 tolerated(0.26) benign(0.001) TCGA-VQ-A8PO-01 3 38039624 38039625 - C VILL Frame_Shift_Ins p.L273Tfs*30 0.39 TCGA-VQ-A8PO-01 3 38045864 38045864 A G VILL Missense_Mutation p.I642V 0.35 tolerated(1) benign(0.012) TCGA-VQ-A8PO-01 3 38524874 38524874 A - ACVR2B 3'UTR 0.15 TCGA-VQ-A8PO-01 3 3886363 3886363 T C LRRN1 Missense_Mutation p.L13S 0.24 deleterious(0.03) benign(0.236) TCGA-VQ-A8PO-01 3 44449093 44449093 C T TCAIM Silent p.C470C 0.29 TCGA-VQ-A8PO-01 3 44828029 44828029 T C KIF15 Missense_Mutation p.V201A 0.18 deleterious(0.02) benign(0.024) TCGA-VQ-A8PO-01 3 45785230 45785230 C T SACM1L 3'UTR 0.39 TCGA-VQ-A8PO-01 3 46560367 46560368 - T LRRC2 3'UTR 0.29 TCGA-VQ-A8PO-01 3 47308688 47308688 A G KIF9 Silent p.I219I 0.08 TCGA-VQ-A8PO-01 3 47910780 47910780 G A MAP4 Missense_Mutation p.T966I 0.25 deleterious(0) benign(0.138) TCGA-VQ-A8PO-01 3 48615932 48615932 C T COL7A1 Missense_Mutation p.R1814H 0.16 unknown(0) TCGA-VQ-A8PO-01 3 49054907 49054907 T G DALRD3 Missense_Mutation p.E253A 0.23 tolerated(0.24) benign(0.005) TCGA-VQ-A8PO-01 3 49569234 49569234 C A DAG1 Silent p.S430S 0.28 TCGA-VQ-A8PO-01 3 49688424 49688424 C T BSN Missense_Mutation p.P633L 0.15 unknown(0) TCGA-VQ-A8PO-01 3 49936090 49936090 C T MST1R Missense_Mutation p.C527Y 0.21 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PO-01 3 51995196 51995196 G A PCBP4 Missense_Mutation p.R21W 0.33 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8PO-01 3 52386627 52386627 C T DNAH1 Silent p.N977N 0.32 TCGA-VQ-A8PO-01 3 52442054 52442054 C T BAP1 Missense_Mutation p.V99M 0.16 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PO-01 3 52548816 52548816 T C STAB1 Missense_Mutation p.C1260R 0.46 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8PO-01 3 52668686 52668686 C T PBRM1 Silent p.L411L 0.09 TCGA-VQ-A8PO-01 3 53381409 53381409 C A DCP1A Splice_Site p.X45_splice 0.39 TCGA-VQ-A8PO-01 3 53910077 53910077 G A ACTR8 Missense_Mutation p.A270V 0.21 deleterious(0.04) benign(0.393) TCGA-VQ-A8PO-01 3 54905584 54905584 C T CACNA2D3 Nonsense_Mutation p.R549* 0.14 TCGA-VQ-A8PO-01 3 56657586 56657587 - T FAM208A 3'UTR 0.36 TCGA-VQ-A8PO-01 3 57132151 57132151 T C IL17RD Missense_Mutation p.Q527R 0.28 tolerated(0.19) benign(0) TCGA-VQ-A8PO-01 3 64138910 64138910 G A PRICKLE2 Silent p.H245H 0.11 TCGA-VQ-A8PO-01 3 65479307 65479307 C A MAGI1 Splice_Site p.X144_splice 0.44 TCGA-VQ-A8PO-01 3 71247403 71247403 C T FOXP1 Missense_Mutation p.V44M 0.11 deleterious_low_confidence(0.03) probably_damaging(0.966) TCGA-VQ-A8PO-01 3 93611809 93611809 C A PROS1 Missense_Mutation p.G375C 0.12 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PO-01 4 104054909 104054909 T C CENPE Silent p.V2221V 0.16 TCGA-VQ-A8PO-01 4 106621122 106621122 A - INTS12 Frame_Shift_Del p.L14* 0.24 TCGA-VQ-A8PO-01 4 111482570 111482571 - T ENPEP Frame_Shift_Ins p.A913Cfs*13 0.26 TCGA-VQ-A8PO-01 4 114277335 114277335 A G ANK2 Missense_Mutation p.S2521G 0.08 probably_damaging(0.998) TCGA-VQ-A8PO-01 4 123283461 123283461 T - KIAA1109 3'UTR 0.21 TCGA-VQ-A8PO-01 4 128819735 128819735 T - PLK4 3'UTR 0.24 TCGA-VQ-A8PO-01 4 129121762 129121762 A - LARP1B Frame_Shift_Del p.M753Cfs*21 0.15 TCGA-VQ-A8PO-01 4 13603397 13603397 G T BOD1L1 Silent p.G1709G 0.28 TCGA-VQ-A8PO-01 4 140432720 140432720 A G SETD7 3'UTR 0.36 TCGA-VQ-A8PO-01 4 146601542 146601542 A C C4orf51 Missense_Mutation p.S63R 0.29 tolerated(0.07) probably_damaging(0.943) TCGA-VQ-A8PO-01 4 151738395 151738395 G C LRBA Missense_Mutation p.A1729G 0.27 tolerated(0.25) benign(0.168) TCGA-VQ-A8PO-01 4 153251985 153251986 - T FBXW7 Frame_Shift_Ins p.V341Sfs*22 0.23 TCGA-VQ-A8PO-01 4 154624108 154624108 C A TLR2 Missense_Mutation p.L17I 0.30 deleterious(0.04) benign(0.01) TCGA-VQ-A8PO-01 4 156281415 156281415 C A MAP9 Missense_Mutation p.A319S 0.17 tolerated(0.36) benign(0.392) TCGA-VQ-A8PO-01 4 159789601 159789601 A G FNIP2 Missense_Mutation p.T605A 0.23 tolerated_low_confidence(0.31) benign(0.007) TCGA-VQ-A8PO-01 4 169342989 169342989 G T DDX60L Silent p.T772T 0.12 TCGA-VQ-A8PO-01 4 174242897 174242897 T C GALNT7 3'UTR 0.46 TCGA-VQ-A8PO-01 4 175598403 175598403 T A GLRA3 Silent p.R251R 0.13 TCGA-VQ-A8PO-01 4 185941827 185941827 A G HELT Silent p.T295T 0.18 TCGA-VQ-A8PO-01 4 186379967 186379967 T - CCDC110 Frame_Shift_Del p.T592Hfs*5 0.26 TCGA-VQ-A8PO-01 4 26432619 26432619 T C RBPJ Missense_Mutation p.V498A 0.20 tolerated_low_confidence(0.16) unknown(0) TCGA-VQ-A8PO-01 4 26616076 26616076 G A TBC1D19 Splice_Site p.X73_splice 0.12 TCGA-VQ-A8PO-01 4 26719580 26719580 C T TBC1D19 Missense_Mutation p.T327I 0.10 deleterious(0.01) possibly_damaging(0.721) TCGA-VQ-A8PO-01 4 3133117 3133117 A - HTT Frame_Shift_Del p.N699Mfs*9 0.25 TCGA-VQ-A8PO-01 4 36115891 36115891 C T ARAP2 Missense_Mutation p.A1353T 0.12 tolerated(0.06) probably_damaging(0.919) TCGA-VQ-A8PO-01 4 38829935 38829935 T C TLR6 Missense_Mutation p.N387S 0.34 deleterious(0) probably_damaging(1) TCGA-VQ-A8PO-01 4 4304082 4304082 G A ZBTB49 Silent p.S173S 0.33 TCGA-VQ-A8PO-01 4 44720378 44720378 A G GNPDA2 Silent p.N58N 0.20 TCGA-VQ-A8PO-01 4 47655569 47655569 C G CORIN Splice_Site p.X615_splice 0.10 TCGA-VQ-A8PO-01 4 62598909 62598909 A G LPHN3 Missense_Mutation p.T278A 0.32 deleterious(0.05) probably_damaging(0.999) TCGA-VQ-A8PO-01 4 69433933 69433933 A - UGT2B17 Frame_Shift_Del p.F90Lfs*2 0.12 TCGA-VQ-A8PO-01 4 69434148 69434148 T G UGT2B17 Missense_Mutation p.S19R 0.13 tolerated(0.21) benign(0.027) TCGA-VQ-A8PO-01 4 7012438 7012438 C T TBC1D14 Missense_Mutation p.A526V 0.10 deleterious(0) probably_damaging(0.986) TCGA-VQ-A8PO-01 4 72623864 72623864 T - GC Frame_Shift_Del p.V262Cfs*12 0.22 TCGA-VQ-A8PO-01 4 72629211 72629211 C A GC Missense_Mutation p.Q224H 0.21 deleterious(0.01) benign(0.035) TCGA-VQ-A8PO-01 4 79373419 79373419 C T FRAS1 Missense_Mutation p.A2225V 0.12 possibly_damaging(0.889) TCGA-VQ-A8PO-01 4 80327750 80327750 A - GK2 Frame_Shift_Del p.F535Lfs*2 0.24 TCGA-VQ-A8PO-01 4 8218765 8218765 T C SH3TC1 Missense_Mutation p.L237P 0.24 tolerated(0.19) benign(0.014) TCGA-VQ-A8PO-01 4 85594095 85594095 C A WDFY3 Missense_Mutation p.V3503L 0.31 deleterious(0.01) probably_damaging(0.994) TCGA-VQ-A8PO-01 4 85648041 85648041 A G WDFY3 Silent p.P2415P 0.26 TCGA-VQ-A8PO-01 4 88420707 88420707 A - SPARCL1 Frame_Shift_Del p.F7Sfs*29 0.09 TCGA-VQ-A8PO-01 4 947111 947111 C T TMEM175 Missense_Mutation p.A199V 0.24 deleterious(0) probably_damaging(0.91) TCGA-VQ-A8PO-01 5 10262606 10262606 C T CCT5 Missense_Mutation p.A398V 0.31 deleterious(0.02) benign(0.225) TCGA-VQ-A8PO-01 5 112769904 112769904 G A TSSK1B Silent p.C211C 0.18 TCGA-VQ-A8PO-01 5 130766706 130766706 A T RAPGEF6 Missense_Mutation p.S1445R 0.20 deleterious_low_confidence(0.01) benign(0.241) TCGA-VQ-A8PO-01 5 132099495 132099495 T C SEPT8 Missense_Mutation p.H146R 0.28 tolerated(0.07) possibly_damaging(0.491) TCGA-VQ-A8PO-01 5 132159848 132159848 G T SHROOM1 Missense_Mutation p.P502H 0.20 deleterious(0.02) probably_damaging(0.953) TCGA-VQ-A8PO-01 5 137495270 137495270 A G BRD8 Missense_Mutation p.S851P 0.16 deleterious(0) possibly_damaging(0.863) TCGA-VQ-A8PO-01 5 140209663 140209663 G A PCDHA6 Missense_Mutation p.A663T 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.828) TCGA-VQ-A8PO-01 5 140249629 140249629 T C PCDHA11 Missense_Mutation p.F314S 0.16 tolerated_low_confidence(0.81) benign(0.019) TCGA-VQ-A8PO-01 5 140627100 140627100 C T PCDHB15 Missense_Mutation p.R652C 0.19 deleterious_low_confidence(0.01) benign(0.106) TCGA-VQ-A8PO-01 5 140746105 140746105 C T PCDHGA5 Silent p.P736P 0.29 TCGA-VQ-A8PO-01 5 140769104 140769104 C T PCDHGB4 Silent p.D551D 0.24 TCGA-VQ-A8PO-01 5 140807437 140807437 C T PCDHGB6 Intron 0.24 TCGA-VQ-A8PO-01 5 141052704 141052705 GA - ARAP3 Intron 0.19 TCGA-VQ-A8PO-01 5 14713699 14713699 G A ANKH Missense_Mutation p.R407W 0.16 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PO-01 5 149357647 149357647 T - SLC26A2 Frame_Shift_Del p.F146Lfs*26 0.22 TCGA-VQ-A8PO-01 5 149755068 149755068 C T TCOF1 Missense_Mutation p.S552L 0.23 tolerated(0.06) probably_damaging(0.966) TCGA-VQ-A8PO-01 5 154291338 154291338 A - GEMIN5 Frame_Shift_Del p.C706Vfs*44 0.12 TCGA-VQ-A8PO-01 5 158250302 158250302 A G EBF1 Silent p.N220N 0.24 TCGA-VQ-A8PO-01 5 159398986 159398986 C T ADRA1B Silent p.C350C 0.25 TCGA-VQ-A8PO-01 5 160114866 160114866 G A ATP10B Silent p.C72C 0.27 TCGA-VQ-A8PO-01 5 167671621 167671621 G A TENM2 Missense_Mutation p.R1906H 0.19 deleterious(0.01) probably_damaging(0.985) TCGA-VQ-A8PO-01 5 169533308 169533308 A C FOXI1 Missense_Mutation p.E116A 0.33 deleterious(0.05) benign(0.243) TCGA-VQ-A8PO-01 5 169805828 169805828 G A KCNMB1 Silent p.Y152Y 0.13 TCGA-VQ-A8PO-01 5 17354205 17354205 T - CTD-2139B15.2 Intron 0.31 TCGA-VQ-A8PO-01 5 176524546 176524546 A G FGFR4 Missense_Mutation p.T760A 0.18 deleterious(0.02) benign(0.114) TCGA-VQ-A8PO-01 5 177547371 177547371 C A N4BP3 Missense_Mutation p.L175I 0.21 tolerated(0.74) probably_damaging(0.978) TCGA-VQ-A8PO-01 5 178562959 178562959 C T ADAMTS2 Missense_Mutation p.R679H 0.15 deleterious(0.03) benign(0.066) TCGA-VQ-A8PO-01 5 19503207 19503207 G T CDH18 Silent p.T508T 0.05 TCGA-VQ-A8PO-01 5 2749899 2749899 G A IRX2 Silent p.G84G 0.23 TCGA-VQ-A8PO-01 5 2752758 2752758 G T C5orf38 Missense_Mutation p.G75W 0.14 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-VQ-A8PO-01 5 31299616 31299616 A G CDH6 Missense_Mutation p.E230G 0.24 deleterious(0.01) benign(0.002) TCGA-VQ-A8PO-01 5 31322962 31322962 A - CDH6 Frame_Shift_Del p.E643Sfs*3 0.15 TCGA-VQ-A8PO-01 5 31799300 31799300 G T PDZD2 5'UTR 0.21 TCGA-VQ-A8PO-01 5 32108092 32108092 G T PDZD2 Missense_Mutation p.A2791S 0.29 tolerated(0.28) probably_damaging(0.955) TCGA-VQ-A8PO-01 5 32419953 32419953 T G ZFR Silent p.P131P 0.28 TCGA-VQ-A8PO-01 5 37158443 37158443 A G C5orf42 Silent p.H2565H 0.30 TCGA-VQ-A8PO-01 5 37752620 37752620 A G WDR70 Missense_Mutation p.E637G 0.12 deleterious(0.05) benign(0.015) TCGA-VQ-A8PO-01 5 6607310 6607310 T C NSUN2 Intron 0.23 TCGA-VQ-A8PO-01 5 67591132 67591134 GAC - PIK3R1 In_Frame_Del p.T576del 0.19 TCGA-VQ-A8PO-01 5 71491945 71491945 C T MAP1B Silent p.D921D 0.26 TCGA-VQ-A8PO-01 5 74026208 74026208 T C GFM2 Missense_Mutation p.M535V 0.24 deleterious(0) benign(0.018) TCGA-VQ-A8PO-01 5 74037380 74037380 T C GFM2 Missense_Mutation p.N302D 0.13 tolerated(0.24) benign(0.075) TCGA-VQ-A8PO-01 5 76358967 76358967 A - AGGF1 Frame_Shift_Del p.N681Tfs*29 0.18 TCGA-VQ-A8PO-01 5 78610581 78610581 A G JMY Missense_Mutation p.S856G 0.13 tolerated(0.14) benign(0.384) TCGA-VQ-A8PO-01 5 7867204 7867204 G A FASTKD3 Silent p.N331N 0.22 TCGA-VQ-A8PO-01 5 78936937 78936937 T - PAPD4 Frame_Shift_Del p.L199Wfs*6 0.15 TCGA-VQ-A8PO-01 5 82816057 82816057 T - VCAN Frame_Shift_Del p.P646Hfs*8 0.24 TCGA-VQ-A8PO-01 5 82837684 82837684 T C VCAN Silent p.P2954P 0.20 TCGA-VQ-A8PO-01 5 86705176 86705176 G A CCNH Missense_Mutation p.T82M 0.31 deleterious(0) probably_damaging(0.962) TCGA-VQ-A8PO-01 5 98206409 98206409 T - CHD1 Frame_Shift_Del p.E1321Kfs*22 0.08 TCGA-VQ-A8PO-01 6 102124573 102124573 C A GRIK2 Missense_Mutation p.A206D 0.12 tolerated(0.51) benign(0.04) TCGA-VQ-A8PO-01 6 109721270 109721270 A T PPIL6 Silent p.T290T 0.30 TCGA-VQ-A8PO-01 6 109771259 109771259 T C MICAL1 Silent p.A407A 0.30 TCGA-VQ-A8PO-01 6 112397206 112397206 T - TUBE1 Frame_Shift_Del p.K249Sfs*10 0.11 TCGA-VQ-A8PO-01 6 117609932 117609932 T C ROS1 Missense_Mutation p.D2256G 0.30 tolerated_low_confidence(0.18) benign(0.005) TCGA-VQ-A8PO-01 6 118887048 118887049 - T CEP85L Frame_Shift_Ins p.R225Tfs*10 0.17 TCGA-VQ-A8PO-01 6 126298820 126298820 T C HINT3 Nonstop_Mutation p.*183Rext*72 0.21 TCGA-VQ-A8PO-01 6 128388712 128388712 C T PTPRK Silent p.P703P 0.26 TCGA-VQ-A8PO-01 6 134210698 134210698 G A TCF21 Missense_Mutation p.G55S 0.25 tolerated(0.31) benign(0) TCGA-VQ-A8PO-01 6 135811799 135811800 - T AHI1 Frame_Shift_Ins p.L33Tfs*9 0.25 TCGA-VQ-A8PO-01 6 142721695 142721695 T G GPR126 Silent p.P547P 0.31 TCGA-VQ-A8PO-01 6 151671262 151671262 T C AKAP12 Missense_Mutation p.L579P 0.23 tolerated(0.07) probably_damaging(0.924) TCGA-VQ-A8PO-01 6 152542182 152542182 C T SYNE1 Splice_Site p.X7219_splice 0.22 TCGA-VQ-A8PO-01 6 152644653 152644653 G C SYNE1 Missense_Mutation p.L5293V 0.06 benign(0) TCGA-VQ-A8PO-01 6 159050795 159050795 A G TMEM181 Missense_Mutation p.N546S 0.05 deleterious(0.02) probably_damaging(1) TCGA-VQ-A8PO-01 6 161469976 161469977 - T MAP3K4 Frame_Shift_Ins p.E227* 0.19 TCGA-VQ-A8PO-01 6 161470420 161470420 G T MAP3K4 Missense_Mutation p.Q372H 0.36 deleterious(0.01) benign(0.009) TCGA-VQ-A8PO-01 6 16328230 16328230 G A ATXN1 Silent p.A104A 0.06 TCGA-VQ-A8PO-01 6 165715131 165715131 G T C6orf118 Missense_Mutation p.A227D 0.17 deleterious(0) probably_damaging(0.993) TCGA-VQ-A8PO-01 6 170591960 170591960 T - DLL1 3'UTR 0.23 TCGA-VQ-A8PO-01 6 17831441 17831441 A G KIF13A Missense_Mutation p.M431T 0.19 deleterious(0) possibly_damaging(0.515) TCGA-VQ-A8PO-01 6 18122714 18122714 G A NHLRC1 Missense_Mutation p.R42C 0.11 tolerated(0.08) probably_damaging(0.994) TCGA-VQ-A8PO-01 6 26056665 26056665 T G HIST1H1C 5'UTR 0.30 TCGA-VQ-A8PO-01 6 27114407 27114407 A G HIST1H2BK Silent p.S57S 0.21 TCGA-VQ-A8PO-01 6 2785256 2785256 T C WRNIP1 Missense_Mutation p.C580R 0.23 deleterious(0) probably_damaging(0.992) TCGA-VQ-A8PO-01 6 30621048 30621048 T - DHX16 Frame_Shift_Del p.I1033* 0.14 TCGA-VQ-A8PO-01 6 31237274 31237274 A G HLA-C Silent p.A348A 0.31 TCGA-VQ-A8PO-01 6 31548829 31548829 C T LTB Missense_Mutation p.G131D 0.30 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PO-01 6 32170147 32170147 C - NOTCH4 Frame_Shift_Del p.G1154Afs*150 0.20 TCGA-VQ-A8PO-01 6 33036464 33036464 C T HLA-DPA1 Missense_Mutation p.R249H 0.23 tolerated(0.21) benign(0.002) TCGA-VQ-A8PO-01 6 33283874 33283874 C - ZBTB22 Frame_Shift_Del p.A274Qfs*27 0.17 TCGA-VQ-A8PO-01 6 36930811 36930811 T C PI16 Silent p.G231G 0.34 TCGA-VQ-A8PO-01 6 36979499 36979499 G T FGD2 Silent p.L132L 0.26 TCGA-VQ-A8PO-01 6 42890918 42890918 T C PTCRA Missense_Mutation p.L71P 0.33 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PO-01 6 43402390 43402390 T C ABCC10 Missense_Mutation p.V471A 0.13 tolerated(0.06) probably_damaging(0.997) TCGA-VQ-A8PO-01 6 44221447 44221447 T - HSP90AB1 3'UTR 0.23 TCGA-VQ-A8PO-01 6 46659737 46659737 T C TDRD6 Missense_Mutation p.L1291P 0.35 tolerated(0.16) benign(0.008) TCGA-VQ-A8PO-01 6 46661674 46661674 A T TDRD6 Missense_Mutation p.T1937S 0.27 tolerated(0.38) benign(0.002) TCGA-VQ-A8PO-01 6 50682833 50682833 G A TFAP2D Missense_Mutation p.R15H 0.29 deleterious(0) benign(0.046) TCGA-VQ-A8PO-01 6 50682922 50682922 C T TFAP2D Missense_Mutation p.P45S 0.13 tolerated(0.06) possibly_damaging(0.857) TCGA-VQ-A8PO-01 6 51484164 51484164 G A PKHD1 Silent p.H3980H 0.17 TCGA-VQ-A8PO-01 6 52357249 52357249 T - EFHC1 3'UTR 0.27 TCGA-VQ-A8PO-01 6 53519208 53519208 A C KLHL31 Missense_Mutation p.L288R 0.27 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PO-01 6 72955529 72955529 G A RIMS1 Missense_Mutation p.R698Q 0.26 deleterious(0) benign(0.409) TCGA-VQ-A8PO-01 6 74227776 74227777 CT - EEF1A1 Frame_Shift_Del p.S414Lfs*14 0.21 TCGA-VQ-A8PO-01 6 75797383 75797383 T A COL12A1 Missense_Mutation p.N3031Y 0.27 probably_damaging(0.998) TCGA-VQ-A8PO-01 6 76072688 76072688 G T FILIP1 Intron 0.15 TCGA-VQ-A8PO-01 6 88049878 88049878 C T SMIM8 Silent p.C60C 0.23 TCGA-VQ-A8PO-01 6 89816961 89816961 G A SRSF12 Missense_Mutation p.R28C 0.09 deleterious(0.03) probably_damaging(0.964) TCGA-VQ-A8PO-01 6 90503595 90503595 C T MDN1 Silent p.K247K 0.24 TCGA-VQ-A8PO-01 6 90572443 90572443 A C CASP8AP2 RNA 0.13 TCGA-VQ-A8PO-01 7 100174740 100174740 C T LRCH4 Missense_Mutation p.A445T 0.25 tolerated(0.4) benign(0.008) TCGA-VQ-A8PO-01 7 100239170 100239170 A G TFR2 5'UTR 0.33 TCGA-VQ-A8PO-01 7 100484525 100484525 A G SRRT Missense_Mutation p.E586G 0.20 deleterious(0.02) benign(0.136) TCGA-VQ-A8PO-01 7 104752883 104752883 G A KMT2E Silent p.Q1560Q 0.21 TCGA-VQ-A8PO-01 7 106786787 106786788 - T PRKAR2B Frame_Shift_Ins p.G209Wfs*6 0.10 TCGA-VQ-A8PO-01 7 107217932 107217932 A - DUS4L Frame_Shift_Del p.R296Gfs*13 0.16 TCGA-VQ-A8PO-01 7 1097408 1097408 G C GPR146 Missense_Mutation p.G86A 0.25 deleterious(0.01) possibly_damaging(0.798) TCGA-VQ-A8PO-01 7 114269935 114269935 C A FOXP2 Missense_Mutation p.Q183K 0.30 tolerated(0.98) unknown(0) TCGA-VQ-A8PO-01 7 122111450 122111450 G A CADPS2 Missense_Mutation p.A722V 0.17 deleterious(0.01) probably_damaging(0.968) TCGA-VQ-A8PO-01 7 122342613 122342613 A G RNF148 Silent p.N64N 0.17 TCGA-VQ-A8PO-01 7 128492746 128492746 C T FLNC Missense_Mutation p.R1982C 0.08 deleterious(0) possibly_damaging(0.841) TCGA-VQ-A8PO-01 7 130038606 130038606 G T CEP41 3'UTR 0.32 TCGA-VQ-A8PO-01 7 138764883 138764883 A C ZC3HAV1 Silent p.A268A 0.17 TCGA-VQ-A8PO-01 7 138832984 138832984 T C TTC26 Missense_Mutation p.L193P 0.21 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8PO-01 7 140481402 140481402 C G BRAF Missense_Mutation p.G469A 0.27 deleterious(0.01) possibly_damaging(0.773) TCGA-VQ-A8PO-01 7 142622725 142622725 T G TRPV5 Missense_Mutation p.I341L 0.26 tolerated(0.19) benign(0.053) TCGA-VQ-A8PO-01 7 147336362 147336362 T C CNTNAP2 Missense_Mutation p.Y688H 0.14 deleterious(0) probably_damaging(0.993) TCGA-VQ-A8PO-01 7 150325248 150325248 C T GIMAP6 Silent p.L146L 0.32 TCGA-VQ-A8PO-01 7 150501923 150501923 C A TMEM176A Missense_Mutation p.D225E 0.27 tolerated(0.2) benign(0.004) TCGA-VQ-A8PO-01 7 150707211 150707211 C - NOS3 Frame_Shift_Del p.G843Afs*115 0.33 TCGA-VQ-A8PO-01 7 150720198 150720198 G T ATG9B Missense_Mutation p.P252H 0.24 tolerated(0.19) possibly_damaging(0.698) TCGA-VQ-A8PO-01 7 150752434 150752434 C T CDK5 Silent p.P170P 0.22 TCGA-VQ-A8PO-01 7 150845991 150845991 C - GBX1 Frame_Shift_Del p.S261Afs*26 0.22 TCGA-VQ-A8PO-01 7 151860868 151860868 T C KMT2C Missense_Mutation p.Y3265C 0.12 probably_damaging(0.999) TCGA-VQ-A8PO-01 7 151878632 151878632 C T KMT2C Missense_Mutation p.V2105M 0.26 benign(0.002) TCGA-VQ-A8PO-01 7 151891642 151891642 C T KMT2C Missense_Mutation p.V1464I 0.14 benign(0.001) TCGA-VQ-A8PO-01 7 151927312 151927312 A G KMT2C Missense_Mutation p.L955S 0.10 probably_damaging(0.926) TCGA-VQ-A8PO-01 7 158828658 158828658 T C VIPR2 Missense_Mutation p.Y265C 0.25 tolerated(0.07) benign(0.004) TCGA-VQ-A8PO-01 7 19765264 19765264 G A TMEM196 Missense_Mutation p.A111V 0.25 deleterious(0.01) possibly_damaging(0.695) TCGA-VQ-A8PO-01 7 31918669 31918669 T A PDE1C Missense_Mutation p.D182V 0.16 deleterious(0) benign(0.175) TCGA-VQ-A8PO-01 7 35244089 35244089 T C TBX20 Silent p.P332P 0.24 TCGA-VQ-A8PO-01 7 38810820 38810820 T - VPS41 Frame_Shift_Del p.N388Ifs*15 0.21 TCGA-VQ-A8PO-01 7 44579941 44579941 C T NPC1L1 Missense_Mutation p.A19T 0.27 tolerated(0.16) probably_damaging(0.996) TCGA-VQ-A8PO-01 7 44875258 44875258 C A H2AFV Splice_Site p.X66_splice 0.24 TCGA-VQ-A8PO-01 7 50514060 50514060 T - FIGNL1 Frame_Shift_Del p.K309Sfs*16 0.17 TCGA-VQ-A8PO-01 7 50531075 50531075 T - DDC Frame_Shift_Del p.I433Sfs*98 0.15 TCGA-VQ-A8PO-01 7 53103576 53103576 C T POM121L12 Missense_Mutation p.P71L 0.18 tolerated(0.16) probably_damaging(0.96) TCGA-VQ-A8PO-01 7 55874871 55874871 T - SEPT14 Frame_Shift_Del p.T300Pfs*53 0.17 TCGA-VQ-A8PO-01 7 56169463 56169463 C A CHCHD2 3'UTR 0.24 TCGA-VQ-A8PO-01 7 56172046 56172046 T C CHCHD2 Missense_Mutation p.Q58R 0.11 deleterious(0.01) probably_damaging(0.98) TCGA-VQ-A8PO-01 7 66415981 66415981 G A TMEM248 Silent p.T213T 0.36 TCGA-VQ-A8PO-01 7 73152084 73152084 C T ABHD11 Intron 0.20 TCGA-VQ-A8PO-01 7 73731913 73731913 G - CLIP2 Frame_Shift_Del p.K15Sfs*73 0.11 TCGA-VQ-A8PO-01 7 7459574 7459574 C T COL28A1 Missense_Mutation p.G670E 0.31 deleterious(0) probably_damaging(1) TCGA-VQ-A8PO-01 7 76908363 76908363 A - CCDC146 Frame_Shift_Del p.M548Cfs*3 0.15 TCGA-VQ-A8PO-01 7 81346569 81346569 C T HGF Missense_Mutation p.D462N 0.36 deleterious(0) probably_damaging(1) TCGA-VQ-A8PO-01 7 81591314 81591314 C T CACNA2D1 Silent p.T954T 0.25 TCGA-VQ-A8PO-01 7 86521203 86521203 A G KIAA1324L Missense_Mutation p.L956P 0.28 deleterious(0) probably_damaging(1) TCGA-VQ-A8PO-01 7 87049390 87049390 C T ABCB4 Missense_Mutation p.G773D 0.32 deleterious(0) probably_damaging(0.982) TCGA-VQ-A8PO-01 7 95216359 95216359 A G PDK4 Missense_Mutation p.L353S 0.18 deleterious(0) possibly_damaging(0.628) TCGA-VQ-A8PO-01 7 97822839 97822839 T C LMTK2 Missense_Mutation p.L1021P 0.23 deleterious(0.04) benign(0.144) TCGA-VQ-A8PO-01 7 98649958 98649958 G A SMURF1 Silent p.F197F 0.21 TCGA-VQ-A8PO-01 7 99084587 99084587 C A ZNF789 Missense_Mutation p.L252M 0.30 deleterious(0.03) possibly_damaging(0.793) TCGA-VQ-A8PO-01 7 99631140 99631140 A - ZKSCAN1 Frame_Shift_Del p.T340Pfs*21 0.18 TCGA-VQ-A8PO-01 7 99699339 99699339 T C AP4M1 Translation_Start_Site p.M1? 0.13 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PO-01 8 101154029 101154029 T - FBXO43 Frame_Shift_Del p.K151Nfs*8 0.13 TCGA-VQ-A8PO-01 8 10396066 10396066 G T PRSS55 Missense_Mutation p.K274N 0.17 deleterious(0.02) benign(0.403) TCGA-VQ-A8PO-01 8 104337027 104337027 G A FZD6 Silent p.E231E 0.07 TCGA-VQ-A8PO-01 8 104337230 104337230 G T FZD6 Missense_Mutation p.W299L 0.11 deleterious(0) probably_damaging(1) TCGA-VQ-A8PO-01 8 104831773 104831773 T - RIMS2 Intron 0.14 TCGA-VQ-A8PO-01 8 104922565 104922565 A - RIMS2 Intron 0.13 TCGA-VQ-A8PO-01 8 105361244 105361244 C T DCSTAMP Missense_Mutation p.A155V 0.23 tolerated(0.23) benign(0.005) TCGA-VQ-A8PO-01 8 114326929 114326929 C T CSMD3 Missense_Mutation p.C91Y 0.14 deleterious(0) possibly_damaging(0.761) TCGA-VQ-A8PO-01 8 121013862 121013863 - C DEPTOR Frame_Shift_Ins p.S237Lfs*7 0.16 TCGA-VQ-A8PO-01 8 12948851 12948851 G A DLC1 Silent p.I1277I 0.23 TCGA-VQ-A8PO-01 8 12968281 12968281 A - DLC1 Frame_Shift_Del p.L491Wfs*13 0.11 TCGA-VQ-A8PO-01 8 130788355 130788355 G T GSDMC Missense_Mutation p.Q133K 0.18 deleterious(0.04) possibly_damaging(0.742) TCGA-VQ-A8PO-01 8 132051787 132051787 C T ADCY8 Missense_Mutation p.G265R 0.26 deleterious(0) probably_damaging(0.949) TCGA-VQ-A8PO-01 8 140715166 140715166 C T KCNK9 Missense_Mutation p.A24T 0.17 deleterious(0.01) probably_damaging(0.988) TCGA-VQ-A8PO-01 8 144993155 144993155 G T PLEC Silent p.R3749R 0.10 TCGA-VQ-A8PO-01 8 145007418 145007418 G A PLEC Silent p.D592D 0.19 TCGA-VQ-A8PO-01 8 145057464 145057464 G A PARP10 Missense_Mutation p.R765C 0.11 tolerated(0.3) benign(0.014) TCGA-VQ-A8PO-01 8 145616604 145616604 A G ADCK5 Missense_Mutation p.H243R 0.21 tolerated(1) benign(0.002) TCGA-VQ-A8PO-01 8 15519799 15519799 G A TUSC3 Silent p.V234V 0.05 TCGA-VQ-A8PO-01 8 17731580 17731580 T - FGL1 Frame_Shift_Del p.K150Nfs*15 0.09 TCGA-VQ-A8PO-01 8 2048742 2048742 C A MYOM2 Silent p.S839S 0.24 TCGA-VQ-A8PO-01 8 21844781 21844781 C A XPO7 Silent p.S569S 0.25 TCGA-VQ-A8PO-01 8 21999079 21999079 A G REEP4 5'UTR 0.32 TCGA-VQ-A8PO-01 8 22012911 22012911 T C LGI3 Missense_Mutation p.Q91R 0.14 deleterious(0.05) possibly_damaging(0.635) TCGA-VQ-A8PO-01 8 23305380 23305380 G A ENTPD4 Silent p.T75T 0.24 TCGA-VQ-A8PO-01 8 25361046 25361046 G A CDCA2 Missense_Mutation p.R610Q 0.12 tolerated(0.6) benign(0.071) TCGA-VQ-A8PO-01 8 25745480 25745481 - G EBF2 Frame_Shift_Ins p.C254Lfs*6 0.18 TCGA-VQ-A8PO-01 8 26237193 26237193 C - BNIP3L 5'Flank 0.14 TCGA-VQ-A8PO-01 8 27151681 27151681 C T TRIM35 Silent p.Q226Q 0.09 TCGA-VQ-A8PO-01 8 28210809 28210809 G - ZNF395 Frame_Shift_Del p.H234Tfs*43 0.39 TCGA-VQ-A8PO-01 8 28575003 28575003 T C EXTL3 Missense_Mutation p.L476P 0.11 deleterious(0) probably_damaging(0.954) TCGA-VQ-A8PO-01 8 28608180 28608180 T G EXTL3 Missense_Mutation p.S853A 0.13 deleterious(0) possibly_damaging(0.734) TCGA-VQ-A8PO-01 8 30210517 30210517 A G TUBBP1 RNA 0.18 TCGA-VQ-A8PO-01 8 33346509 33346509 C T MAK16 Missense_Mutation p.R82W 0.23 deleterious(0) probably_damaging(0.932) TCGA-VQ-A8PO-01 8 41166417 41166417 C T SFRP1 Missense_Mutation p.A88T 0.15 tolerated(0.17) probably_damaging(0.915) TCGA-VQ-A8PO-01 8 41581121 41581121 G A ANK1 Missense_Mutation p.R281C 0.16 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PO-01 8 41844989 41844989 G A KAT6A Silent p.A231A 0.20 TCGA-VQ-A8PO-01 8 42214859 42214859 A - POLB Frame_Shift_Del p.V169Wfs*27 0.13 TCGA-VQ-A8PO-01 8 49637298 49637298 T C EFCAB1 3'UTR 0.19 TCGA-VQ-A8PO-01 8 53852725 53852725 C T NPBWR1 Silent p.F86F 0.18 TCGA-VQ-A8PO-01 8 55370890 55370890 C T SOX17 Silent p.G64G 0.20 TCGA-VQ-A8PO-01 8 56711598 56711599 - A TGS1 Frame_Shift_Ins p.G559Rfs*2 0.16 TCGA-VQ-A8PO-01 8 57358440 57358440 C T PENK Missense_Mutation p.E25K 0.06 deleterious(0.02) possibly_damaging(0.57) TCGA-VQ-A8PO-01 8 59750757 59750757 C T TOX Silent p.A269A 0.07 TCGA-VQ-A8PO-01 8 73982108 73982109 CA - SBSPON Frame_Shift_Del p.V203Gfs*34 0.20 TCGA-VQ-A8PO-01 8 8233974 8233974 T C SGK223 Missense_Mutation p.S649G 0.12 benign(0.003) TCGA-VQ-A8PO-01 8 87241841 87241841 T C SLC7A13 Silent p.A222A 0.14 TCGA-VQ-A8PO-01 8 87424011 87424011 T G WWP1 Silent p.A323A 0.10 TCGA-VQ-A8PO-01 8 93029575 93029575 G A RUNX1T1 Silent p.H46H 0.13 TCGA-VQ-A8PO-01 8 95507120 95507121 - A KIAA1429 Frame_Shift_Ins p.Q1537Sfs*3 0.16 TCGA-VQ-A8PO-01 8 97312049 97312049 G T PTDSS1 Missense_Mutation p.R243M 0.16 deleterious(0.03) possibly_damaging(0.907) TCGA-VQ-A8PO-01 8 99718785 99718785 A G STK3 Silent p.Y226Y 0.10 TCGA-VQ-A8PO-01 9 104319696 104319696 G A RNF20 Missense_Mutation p.V734I 0.22 deleterious(0.03) benign(0.183) TCGA-VQ-A8PO-01 9 1055754 1055754 T C DMRT2 Intron 0.40 TCGA-VQ-A8PO-01 9 106885501 106885501 A - SMC2 Frame_Shift_Del p.T751Pfs*9 0.13 TCGA-VQ-A8PO-01 9 107361656 107361656 A - OR13C5 Frame_Shift_Del p.L14* 0.14 TCGA-VQ-A8PO-01 9 111640347 111640347 A G IKBKAP Silent p.D1261D 0.14 TCGA-VQ-A8PO-01 9 113238463 113238463 G A SVEP1 Intron 0.24 TCGA-VQ-A8PO-01 9 114490016 114490016 T - C9orf84 Frame_Shift_Del p.K513Nfs*9 0.12 TCGA-VQ-A8PO-01 9 115336783 115336783 G A KIAA1958 Silent p.E141E 0.25 TCGA-VQ-A8PO-01 9 115941002 115941002 T - FKBP15 Frame_Shift_Del p.K665Rfs*9 0.33 TCGA-VQ-A8PO-01 9 118973961 118973961 C T PAPPA Silent p.H556H 0.18 TCGA-VQ-A8PO-01 9 125141077 125141077 C - PTGS1 Frame_Shift_Del p.T128Pfs*17 0.22 TCGA-VQ-A8PO-01 9 129595266 129595266 G - ZBTB43 Frame_Shift_Del p.G161Vfs*11 0.18 TCGA-VQ-A8PO-01 9 131019390 131019390 A - GOLGA2 Frame_Shift_Del p.Y989Tfs*9 0.25 TCGA-VQ-A8PO-01 9 131671040 131671040 C T LRRC8A Missense_Mutation p.R533C 0.30 deleterious(0) benign(0.333) TCGA-VQ-A8PO-01 9 131857690 131857690 G - CRAT Frame_Shift_Del p.R623Gfs*47 0.15 TCGA-VQ-A8PO-01 9 133376547 133376547 T C ASS1 3'UTR 0.31 TCGA-VQ-A8PO-01 9 134183360 134183360 C T PPAPDC3 Missense_Mutation p.R168W 0.26 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8PO-01 9 135866446 135866446 C T GFI1B 3'UTR 0.23 TCGA-VQ-A8PO-01 9 138413325 138413325 G A LCN1 5'UTR 0.16 TCGA-VQ-A8PO-01 9 139282018 139282018 G T SNAPC4 Missense_Mutation p.A415D 0.26 deleterious(0) probably_damaging(1) TCGA-VQ-A8PO-01 9 139749465 139749465 C - MAMDC4 Frame_Shift_Del p.R369Gfs*174 0.14 TCGA-VQ-A8PO-01 9 140007873 140007873 C T DPP7 Silent p.A187A 0.27 TCGA-VQ-A8PO-01 9 140267405 140267405 G A EXD3 Silent p.C138C 0.32 TCGA-VQ-A8PO-01 9 140508330 140508330 G - ARRDC1 Intron 0.28 TCGA-VQ-A8PO-01 9 140508843 140508843 G A ARRDC1 Silent p.Q237Q 0.09 TCGA-VQ-A8PO-01 9 140952583 140952583 G A CACNA1B Missense_Mutation p.V1397M 0.25 deleterious(0) probably_damaging(0.973) TCGA-VQ-A8PO-01 9 20414334 20414334 G A MLLT3 Silent p.S170S 0.09 TCGA-VQ-A8PO-01 9 26886115 26886116 - A CAAP1 Frame_Shift_Ins p.L192Ffs*5 0.21 TCGA-VQ-A8PO-01 9 32492511 32492511 G A DDX58 Missense_Mutation p.A150V 0.06 deleterious(0.04) possibly_damaging(0.468) TCGA-VQ-A8PO-01 9 33248457 33248457 T C SPINK4 Silent p.D83D 0.20 TCGA-VQ-A8PO-01 9 33264449 33264451 TTC - BAG1 In_Frame_Del p.K75del 0.33 TCGA-VQ-A8PO-01 9 33465291 33465291 C T NOL6 Silent p.Q865Q 0.25 TCGA-VQ-A8PO-01 9 35045638 35045639 - C C9orf131 Frame_Shift_Ins p.Q1006Pfs*22 0.17 TCGA-VQ-A8PO-01 9 37740153 37740153 G A FRMPD1 Missense_Mutation p.R543H 0.25 tolerated(0.55) benign(0.001) TCGA-VQ-A8PO-01 9 41962564 41962564 C T RP11-204M4.2 RNA 0.07 TCGA-VQ-A8PO-01 9 4583045 4583045 G A SLC1A1 Missense_Mutation p.A401T 0.26 deleterious(0) probably_damaging(0.936) TCGA-VQ-A8PO-01 9 69416204 69416204 A G ANKRD20A4 Missense_Mutation p.Q384R 0.10 tolerated(0.1) benign(0.001) TCGA-VQ-A8PO-01 9 712351 712351 A C KANK1 Missense_Mutation p.S529R 0.08 tolerated(0.12) benign(0.001) TCGA-VQ-A8PO-01 9 713157 713157 G - KANK1 Frame_Shift_Del p.V799Lfs*6 0.16 TCGA-VQ-A8PO-01 9 99580184 99580184 G A ZNF782 3'UTR 0.36 TCGA-VQ-A8PO-01 X 107381172 107381172 T G ATG4A Missense_Mutation p.L229R 0.22 deleterious(0) probably_damaging(1) TCGA-VQ-A8PO-01 X 109924785 109924785 C - CHRDL1 Frame_Shift_Del p.E361Rfs*6 0.16 TCGA-VQ-A8PO-01 X 128922024 128922026 AGG - SASH3 In_Frame_Del p.E45del 0.63 TCGA-VQ-A8PO-01 X 129060265 129060265 C T UTP14A Missense_Mutation p.P665S 0.57 deleterious(0) benign(0.437) TCGA-VQ-A8PO-01 X 12924798 12924798 C T TLR8 5'UTR 0.26 TCGA-VQ-A8PO-01 X 152958456 152958456 G T SLC6A8 Intron 0.20 TCGA-VQ-A8PO-01 X 17745046 17745046 C T NHS Silent p.A919A 0.60 TCGA-VQ-A8PO-01 X 2343342 2343342 A G DHRSX Missense_Mutation p.F38S 0.24 deleterious(0.03) benign(0.332) TCGA-VQ-A8PO-01 X 23801929 23801929 A G SAT1 Missense_Mutation p.D44G 0.51 deleterious(0.05) possibly_damaging(0.746) TCGA-VQ-A8PO-01 X 27997662 27997662 C A DCAF8L1 Missense_Mutation p.C597F 0.49 deleterious(0.01) probably_damaging(0.993) TCGA-VQ-A8PO-01 X 31227760 31227760 G T DMD Missense_Mutation p.Q3140K 0.53 benign(0.014) TCGA-VQ-A8PO-01 X 47088025 47088027 TCG - CDK16 In_Frame_Del p.S554del 0.30 TCGA-VQ-A8PO-01 X 49034353 49034353 C A PRICKLE3 Missense_Mutation p.G315V 0.28 deleterious(0) probably_damaging(0.968) TCGA-VQ-A8PO-01 X 63488467 63488467 C A MTMR8 Missense_Mutation p.G689C 0.14 deleterious_low_confidence(0.02) benign(0.339) TCGA-VQ-A8PO-01 X 67339121 67339121 T C OPHN1 Missense_Mutation p.T444A 0.25 deleterious(0) possibly_damaging(0.821) TCGA-VQ-A8PO-01 X 70368045 70368045 C T NLGN3 Missense_Mutation p.P149L 0.55 deleterious(0) probably_damaging(1) TCGA-VQ-A8PO-01 X 80532609 80532609 C T SH3BGRL Nonsense_Mutation p.R58* 0.70 TCGA-VQ-A8PP-01 10 101835818 101835818 C T CPN1 Silent p.A90A 0.26 TCGA-VQ-A8PP-01 10 103991759 103991759 G T PITX3 Missense_Mutation p.Q27K 0.36 tolerated(0.81) benign(0) TCGA-VQ-A8PP-01 10 104679620 104679620 C T CNNM2 Silent p.G461G 0.09 TCGA-VQ-A8PP-01 10 106899182 106899182 T G SORCS3 Missense_Mutation p.Y414D 0.29 deleterious(0) probably_damaging(0.98) TCGA-VQ-A8PP-01 10 111624831 111624831 A - XPNPEP1 3'UTR 0.20 TCGA-VQ-A8PP-01 10 112257943 112257943 C T DUSP5 Missense_Mutation p.R22C 0.11 deleterious(0) benign(0.26) TCGA-VQ-A8PP-01 10 115489357 115489357 T - CASP7 3'UTR 0.24 TCGA-VQ-A8PP-01 10 115891909 115891911 CTT - C10orf118 In_Frame_Del p.E563del 0.26 TCGA-VQ-A8PP-01 10 118357561 118357561 T C PNLIPRP1 Missense_Mutation p.F233L 0.27 tolerated(0.25) benign(0.03) TCGA-VQ-A8PP-01 10 119044917 119044917 C G PDZD8 Missense_Mutation p.V443L 0.24 deleterious(0.05) possibly_damaging(0.822) TCGA-VQ-A8PP-01 10 121341985 121341985 T C TIAL1 Missense_Mutation p.K89E 0.25 tolerated(0.11) benign(0.062) TCGA-VQ-A8PP-01 10 121411254 121411254 C - BAG3 Frame_Shift_Del p.G25Dfs*186 0.30 TCGA-VQ-A8PP-01 10 121551500 121551500 G A INPP5F Silent p.V188V 0.07 TCGA-VQ-A8PP-01 10 121689137 121689137 T G SEC23IP Missense_Mutation p.S778A 0.27 tolerated(0.39) benign(0.002) TCGA-VQ-A8PP-01 10 123310847 123310847 T - FGFR2 Frame_Shift_Del p.N194Tfs*39 0.21 TCGA-VQ-A8PP-01 10 123970026 123970026 C T TACC2 Missense_Mutation p.P2029L 0.44 probably_damaging(1) TCGA-VQ-A8PP-01 10 123970031 123970031 G A TACC2 Missense_Mutation p.A2031T 0.32 probably_damaging(1) TCGA-VQ-A8PP-01 10 123985887 123985887 G A TACC2 Missense_Mutation p.D2539N 0.40 benign(0.176) TCGA-VQ-A8PP-01 10 125514202 125514202 C T CPXM2 Missense_Mutation p.G665D 0.05 tolerated(0.1) probably_damaging(0.989) TCGA-VQ-A8PP-01 10 126631693 126631693 A G ZRANB1 Missense_Mutation p.N211D 0.17 tolerated(0.55) benign(0.003) TCGA-VQ-A8PP-01 10 127417933 127417933 A - EDRF1 Frame_Shift_Del p.N302Mfs*47 0.30 TCGA-VQ-A8PP-01 10 127520071 127520071 T G BCCIP Missense_Mutation p.L165R 0.27 deleterious(0.01) possibly_damaging(0.837) TCGA-VQ-A8PP-01 10 128796493 128796493 T C DOCK1 Silent p.P249P 0.32 TCGA-VQ-A8PP-01 10 135025322 135025322 C T KNDC1 Missense_Mutation p.A1399V 0.25 deleterious(0.03) benign(0.082) TCGA-VQ-A8PP-01 10 135084728 135084728 G A ADAM8 Silent p.H450H 0.20 TCGA-VQ-A8PP-01 10 16911778 16911778 G A CUBN Missense_Mutation p.T3104I 0.26 tolerated(0.79) benign(0.006) TCGA-VQ-A8PP-01 10 16960680 16960680 A G CUBN Missense_Mutation p.L2314S 0.25 deleterious(0.02) probably_damaging(0.988) TCGA-VQ-A8PP-01 10 27322259 27322259 T - ANKRD26 Frame_Shift_Del p.K1234Nfs*19 0.26 TCGA-VQ-A8PP-01 10 3172053 3172053 C T PFKP Missense_Mutation p.R576C 0.21 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PP-01 10 32322863 32322863 G A KIF5B Silent p.T405T 0.32 TCGA-VQ-A8PP-01 10 35896625 35896625 G A GJD4 Missense_Mutation p.A62T 0.34 tolerated(0.23) benign(0.044) TCGA-VQ-A8PP-01 10 35928679 35928679 C T FZD8 Missense_Mutation p.R560H 0.19 tolerated(0.24) benign(0.121) TCGA-VQ-A8PP-01 10 43869100 43869100 T C FXYD4 5'UTR 0.52 TCGA-VQ-A8PP-01 10 50953438 50953438 G A OGDHL Silent p.Y527Y 0.32 TCGA-VQ-A8PP-01 10 52086971 52086971 A T SGMS1 Silent p.S245S 0.23 TCGA-VQ-A8PP-01 10 59997489 59997489 C T IPMK Splice_Site p.X92_splice 0.20 TCGA-VQ-A8PP-01 10 60556112 60556112 A - BICC1 Frame_Shift_Del p.S399Vfs*7 0.24 TCGA-VQ-A8PP-01 10 64022446 64022446 T C RTKN2 Silent p.L65L 0.32 TCGA-VQ-A8PP-01 10 64573030 64573030 A G EGR2 Silent p.S456S 0.20 TCGA-VQ-A8PP-01 10 72493702 72493702 G A ADAMTS14 Missense_Mutation p.V427I 0.07 tolerated(1) benign(0.025) TCGA-VQ-A8PP-01 10 74235016 74235016 G A MICU1 Missense_Mutation p.R259C 0.14 deleterious(0.01) possibly_damaging(0.637) TCGA-VQ-A8PP-01 10 75113421 75113422 - T TTC18 Frame_Shift_Ins p.I48Nfs*15 0.11 TCGA-VQ-A8PP-01 10 75526903 75526903 A C SEC24C Missense_Mutation p.K662T 0.26 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PP-01 10 7608167 7608167 C T ITIH5 Missense_Mutation p.G785R 0.26 tolerated(0.12) benign(0.367) TCGA-VQ-A8PP-01 10 76910647 76910647 G A SAMD8 Missense_Mutation p.G121R 0.32 tolerated(0.31) benign(0.157) TCGA-VQ-A8PP-01 10 8115916 8115916 C A GATA3 Missense_Mutation p.P422Q 0.25 deleterious(0.04) probably_damaging(1) TCGA-VQ-A8PP-01 10 85984104 85984104 A G LRIT2 Missense_Mutation p.W293R 0.31 tolerated(0.06) benign(0.261) TCGA-VQ-A8PP-01 10 87362186 87362186 C T GRID1 Silent p.S958S 0.29 TCGA-VQ-A8PP-01 10 875401 875402 - G LARP4B Frame_Shift_Ins p.Q350Pfs*23 0.14 TCGA-VQ-A8PP-01 10 88702297 88702297 C T MMRN2 Silent p.Q748Q 0.26 TCGA-VQ-A8PP-01 10 90774023 90774023 T C FAS Missense_Mutation p.V275A 0.36 deleterious(0) probably_damaging(0.988) TCGA-VQ-A8PP-01 10 94413425 94413425 A - KIF11 Frame_Shift_Del p.K1016Nfs*52 0.29 TCGA-VQ-A8PP-01 10 95140989 95140989 A G MYOF Silent p.R621R 0.27 TCGA-VQ-A8PP-01 10 95155912 95155912 A G MYOF Silent p.G468G 0.24 TCGA-VQ-A8PP-01 10 96818244 96818244 T C CYP2C8 Missense_Mutation p.I223V 0.37 tolerated(0.07) benign(0.013) TCGA-VQ-A8PP-01 10 97951715 97951715 T - BLNK 3'UTR 0.32 TCGA-VQ-A8PP-01 10 98376438 98376438 T C PIK3AP1 Missense_Mutation p.T658A 0.16 tolerated(0.07) possibly_damaging(0.844) TCGA-VQ-A8PP-01 11 100126535 100126535 C T CNTN5 Silent p.T683T 0.31 TCGA-VQ-A8PP-01 11 10328036 10328036 G A ADM Missense_Mutation p.A136T 0.11 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PP-01 11 10483113 10483113 A G AMPD3 Missense_Mutation p.Q25R 0.27 tolerated(0.16) benign(0.001) TCGA-VQ-A8PP-01 11 107431524 107431524 A G ALKBH8 Silent p.H32H 0.23 TCGA-VQ-A8PP-01 11 108044069 108044069 T - NPAT Frame_Shift_Del p.S548Vfs*11 0.16 TCGA-VQ-A8PP-01 11 108114823 108114823 T C ATM Missense_Mutation p.S214P 0.23 tolerated(0.12) benign(0.027) TCGA-VQ-A8PP-01 11 1082294 1082294 C T MUC2 Silent p.Y583Y 0.38 TCGA-VQ-A8PP-01 11 1096510 1096510 G A MUC2 Missense_Mutation p.V2179M 0.32 unknown(0) TCGA-VQ-A8PP-01 11 110451137 110451137 A C ARHGAP20 Missense_Mutation p.C845G 0.25 deleterious(0.01) probably_damaging(0.986) TCGA-VQ-A8PP-01 11 111957431 111957431 T C TIMM8B Missense_Mutation p.E21G 0.53 tolerated(0.23) benign(0.058) TCGA-VQ-A8PP-01 11 113210160 113210160 G - TTC12 Frame_Shift_Del p.I266Lfs*4 0.24 TCGA-VQ-A8PP-01 11 113268024 113268024 G T ANKK1 Missense_Mutation p.R306M 0.19 deleterious(0.01) benign(0.376) TCGA-VQ-A8PP-01 11 113270361 113270361 A G ANKK1 Missense_Mutation p.D557G 0.23 deleterious(0.04) benign(0.211) TCGA-VQ-A8PP-01 11 114569444 114569444 C T NXPE2 Silent p.T270T 0.50 TCGA-VQ-A8PP-01 11 117152365 117152365 G A RNF214 Missense_Mutation p.S429N 0.34 tolerated(0.11) possibly_damaging(0.894) TCGA-VQ-A8PP-01 11 117257936 117257936 T C CEP164 Missense_Mutation p.V581A 0.36 tolerated(1) benign(0.004) TCGA-VQ-A8PP-01 11 117321319 117321319 G A DSCAML1 Silent p.N1278N 0.23 TCGA-VQ-A8PP-01 11 117376363 117376363 T C DSCAML1 Missense_Mutation p.D683G 0.10 deleterious(0.01) probably_damaging(0.979) TCGA-VQ-A8PP-01 11 118184455 118184455 C T CD3E Missense_Mutation p.S129L 0.25 deleterious(0.01) benign(0.004) TCGA-VQ-A8PP-01 11 118951930 118951930 A G VPS11 Missense_Mutation p.D855G 0.31 deleterious(0) benign(0.371) TCGA-VQ-A8PP-01 11 119003655 119003655 C T HINFP Silent p.C319C 0.08 TCGA-VQ-A8PP-01 11 119005130 119005130 A G HINFP Silent p.P492P 0.27 TCGA-VQ-A8PP-01 11 120916494 120916494 T C TBCEL Missense_Mutation p.V32A 0.23 deleterious(0.01) possibly_damaging(0.768) TCGA-VQ-A8PP-01 11 124950628 124950628 A G SLC37A2 Missense_Mutation p.I216V 0.25 tolerated(0.43) benign(0.011) TCGA-VQ-A8PP-01 11 124972105 124972105 G A TMEM218 Silent p.G11G 0.21 TCGA-VQ-A8PP-01 11 1267323 1267325 CTT - MUC5B In_Frame_Del p.F3072del 0.27 TCGA-VQ-A8PP-01 11 133790549 133790549 G A IGSF9B Missense_Mutation p.T1024M 0.19 deleterious_low_confidence(0) probably_damaging(0.939) TCGA-VQ-A8PP-01 11 133792465 133792465 T - IGSF9B Frame_Shift_Del p.D761Tfs*22 0.32 TCGA-VQ-A8PP-01 11 15134025 15134025 C - INSC Frame_Shift_Del p.P5Lfs*44 0.20 TCGA-VQ-A8PP-01 11 16760193 16760193 C T C11orf58 5'UTR 0.33 TCGA-VQ-A8PP-01 11 17482033 17482033 A G ABCC8 Splice_Site p.X337_splice 0.19 TCGA-VQ-A8PP-01 11 18361121 18361121 G A GTF2H1 Missense_Mutation p.R175Q 0.24 tolerated(0.24) benign(0.004) TCGA-VQ-A8PP-01 11 18502107 18502107 T C TSG101 Missense_Mutation p.S387G 0.21 tolerated(0.21) benign(0.005) TCGA-VQ-A8PP-01 11 18722705 18722705 G A TMEM86A Missense_Mutation p.A83T 0.25 deleterious(0.01) probably_damaging(0.991) TCGA-VQ-A8PP-01 11 1957456 1957456 C T TNNT3 Intron 0.21 TCGA-VQ-A8PP-01 11 20948937 20948937 A C NELL1 Silent p.R281R 0.31 TCGA-VQ-A8PP-01 11 22833527 22833527 T G GAS2 Missense_Mutation p.S303A 0.31 tolerated(1) benign(0.001) TCGA-VQ-A8PP-01 11 280920 280920 A G NLRP6 Missense_Mutation p.T396A 0.27 deleterious(0.01) benign(0.254) TCGA-VQ-A8PP-01 11 32460619 32460619 A G WT1 5'Flank 0.23 TCGA-VQ-A8PP-01 11 33792408 33792408 A - FBXO3 Intron 0.16 TCGA-VQ-A8PP-01 11 34904965 34904965 T C APIP Missense_Mutation p.E183G 0.19 tolerated(0.07) benign(0.143) TCGA-VQ-A8PP-01 11 34910341 34910341 T - APIP Frame_Shift_Del p.S95Afs*8 0.37 TCGA-VQ-A8PP-01 11 35453855 35453855 G A PAMR1 3'UTR 0.33 TCGA-VQ-A8PP-01 11 35827994 35827994 T C TRIM44 3'UTR 0.31 TCGA-VQ-A8PP-01 11 3661402 3661402 G - ART5 Frame_Shift_Del p.P86Lfs*9 0.12 TCGA-VQ-A8PP-01 11 3688572 3688572 G A CHRNA10 Missense_Mutation p.A262V 0.33 deleterious(0) probably_damaging(0.953) TCGA-VQ-A8PP-01 11 3733753 3733753 A G NUP98 Intron 0.33 TCGA-VQ-A8PP-01 11 45671882 45671882 G A CHST1 Missense_Mutation p.R198C 0.28 tolerated(0.07) possibly_damaging(0.806) TCGA-VQ-A8PP-01 11 46726868 46726868 C T ZNF408 Missense_Mutation p.R540W 0.23 deleterious(0) probably_damaging(1) TCGA-VQ-A8PP-01 11 46751094 46751094 A G F2 Missense_Mutation p.D546G 0.17 deleterious(0) possibly_damaging(0.833) TCGA-VQ-A8PP-01 11 46880666 46880666 C T LRP4 Silent p.T1862T 0.26 TCGA-VQ-A8PP-01 11 55038296 55038296 T C TRIM48 3'UTR 0.64 TCGA-VQ-A8PP-01 11 55659175 55659175 T A TRIM51 3'UTR 0.36 TCGA-VQ-A8PP-01 11 55703612 55703612 A T OR5I1 Missense_Mutation p.S89T 0.15 tolerated(0.21) benign(0.003) TCGA-VQ-A8PP-01 11 55761970 55761970 C T OR5F1 Silent p.G44G 0.33 TCGA-VQ-A8PP-01 11 558069 558069 G - C11orf35 Intron 0.18 TCGA-VQ-A8PP-01 11 57258696 57258696 C - SLC43A1 Splice_Site p.X398_splice 0.22 TCGA-VQ-A8PP-01 11 57319682 57319682 T A UBE2L6 3'UTR 0.43 TCGA-VQ-A8PP-01 11 57373595 57373595 G A SERPING1 Silent p.V266V 0.31 TCGA-VQ-A8PP-01 11 57427139 57427139 C T CLP1 Missense_Mutation p.A64V 0.13 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PP-01 11 57427181 57427181 G A CLP1 Missense_Mutation p.R78H 0.31 deleterious(0.02) benign(0.002) TCGA-VQ-A8PP-01 11 57427457 57427457 G A CLP1 Missense_Mutation p.R170Q 0.38 deleterious(0.05) possibly_damaging(0.487) TCGA-VQ-A8PP-01 11 5878151 5878151 A G OR52E8 Missense_Mutation p.F261S 0.10 deleterious(0) possibly_damaging(0.901) TCGA-VQ-A8PP-01 11 58892748 58892748 C T FAM111B Missense_Mutation p.T393M 0.28 tolerated(0.53) benign(0) TCGA-VQ-A8PP-01 11 60296837 60296837 G A MS4A13 Splice_Site p.X103_splice 0.27 TCGA-VQ-A8PP-01 11 61069750 61069750 A G DDB1 Missense_Mutation p.V1065A 0.24 deleterious(0) probably_damaging(0.982) TCGA-VQ-A8PP-01 11 61081787 61081787 G A DDB1 Nonsense_Mutation p.Q528* 0.22 TCGA-VQ-A8PP-01 11 62296647 62296647 C T AHNAK Missense_Mutation p.V1748M 0.34 possibly_damaging(0.781) TCGA-VQ-A8PP-01 11 62601972 62601972 G - WDR74 Frame_Shift_Del p.Q216Sfs*6 0.23 TCGA-VQ-A8PP-01 11 63764047 63764047 G A OTUB1 Missense_Mutation p.G89S 0.07 deleterious(0) probably_damaging(0.986) TCGA-VQ-A8PP-01 11 64032458 64032458 G A PLCB3 Silent p.Q896Q 0.38 TCGA-VQ-A8PP-01 11 6415235 6415235 G A SMPD1 Missense_Mutation p.A484T 0.39 deleterious(0.01) possibly_damaging(0.786) TCGA-VQ-A8PP-01 11 6417142 6417142 G A APBB1 Silent p.A611A 0.29 TCGA-VQ-A8PP-01 11 64402894 64402894 C - NRXN2 Frame_Shift_Del p.G1145Efs*58 0.19 TCGA-VQ-A8PP-01 11 64572093 64572093 G - MEN1 Frame_Shift_Del p.R521Gfs*43 0.15 TCGA-VQ-A8PP-01 11 65269041 65269041 T - MALAT1 RNA 0.22 TCGA-VQ-A8PP-01 11 65269498 65269498 T - MALAT1 RNA 0.24 TCGA-VQ-A8PP-01 11 65628502 65628502 T A MUS81 Missense_Mutation p.I65N 0.25 deleterious(0) probably_damaging(0.993) TCGA-VQ-A8PP-01 11 66039628 66039628 G A RAB1B Missense_Mutation p.D30N 0.27 deleterious(0) benign(0.103) TCGA-VQ-A8PP-01 11 6636526 6636526 G T TPP1 Missense_Mutation p.P434H 0.28 deleterious(0.04) benign(0.005) TCGA-VQ-A8PP-01 11 67077695 67077697 AAG - SSH3 In_Frame_Del p.E525del 0.29 TCGA-VQ-A8PP-01 11 67257885 67257885 C T AIP Silent p.Y248Y 0.26 TCGA-VQ-A8PP-01 11 67402372 67402373 - G TBX10 Frame_Shift_Ins p.F98Lfs*72 0.20 TCGA-VQ-A8PP-01 11 6789268 6789268 T - OR2AG2 Frame_Shift_Del p.K307Nfs*? 0.30 TCGA-VQ-A8PP-01 11 6867583 6867583 G A OR10A5 Missense_Mutation p.A224T 0.28 tolerated(0.54) benign(0.026) TCGA-VQ-A8PP-01 11 69514106 69514107 - G FGF19 Frame_Shift_Ins p.L192Pfs*24 0.20 TCGA-VQ-A8PP-01 11 700688 700688 A C TMEM80 Missense_Mutation p.E94D 0.30 deleterious(0.02) probably_damaging(0.977) TCGA-VQ-A8PP-01 11 71717090 71717090 C - NUMA1 Frame_Shift_Del p.A1895Pfs*40 0.23 TCGA-VQ-A8PP-01 11 71948484 71948484 C - INPPL1 Frame_Shift_Del p.S1068Afs*63 0.24 TCGA-VQ-A8PP-01 11 74562149 74562149 C T XRRA1 Missense_Mutation p.R447Q 0.27 tolerated(0.2) benign(0.023) TCGA-VQ-A8PP-01 11 74717449 74717449 G A NEU3 Missense_Mutation p.R433H 0.31 tolerated(0.54) benign(0.025) TCGA-VQ-A8PP-01 11 74800371 74800371 C T OR2AT4 Missense_Mutation p.A130T 0.20 deleterious(0) probably_damaging(0.973) TCGA-VQ-A8PP-01 11 75173928 75173928 G A GDPD5 Missense_Mutation p.R42C 0.25 tolerated(0.29) benign(0.004) TCGA-VQ-A8PP-01 11 76796074 76796074 G A CAPN5 Missense_Mutation p.A48T 0.47 tolerated(0.58) benign(0.003) TCGA-VQ-A8PP-01 11 7847188 7847188 T C OR5P3 Missense_Mutation p.E111G 0.07 deleterious(0) probably_damaging(0.931) TCGA-VQ-A8PP-01 11 83252852 83252852 C A DLG2 Nonsense_Mutation p.G664* 0.25 TCGA-VQ-A8PP-01 11 83770433 83770433 C T DLG2 Missense_Mutation p.V282I 0.23 deleterious(0.02) probably_damaging(0.939) TCGA-VQ-A8PP-01 11 85593582 85593582 T C CCDC83 Silent p.I69I 0.06 TCGA-VQ-A8PP-01 11 89028600 89028600 T C TYR 3'UTR 0.48 TCGA-VQ-A8PP-01 11 8942935 8942935 C T C11orf16 Silent p.P444P 0.07 TCGA-VQ-A8PP-01 12 102301972 102301972 T C DRAM1 Silent p.A117A 0.26 TCGA-VQ-A8PP-01 12 102301996 102301996 C T DRAM1 Silent p.G125G 0.26 TCGA-VQ-A8PP-01 12 104497057 104497057 T - HCFC2 3'UTR 0.31 TCGA-VQ-A8PP-01 12 10532376 10532376 A - KLRK1 Frame_Shift_Del p.F55Sfs*7 0.39 TCGA-VQ-A8PP-01 12 105425570 105425570 C A ALDH1L2 Missense_Mutation p.G796V 0.20 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8PP-01 12 107365041 107365041 G A C12orf23 Missense_Mutation p.V75M 0.27 deleterious_low_confidence(0.04) benign(0.178) TCGA-VQ-A8PP-01 12 108920086 108920086 C T SART3 Silent p.T720T 0.24 TCGA-VQ-A8PP-01 12 110573190 110573190 A - IFT81 Frame_Shift_Del p.E217Rfs*31 0.15 TCGA-VQ-A8PP-01 12 110890762 110890762 T C GPN3 3'UTR 0.22 TCGA-VQ-A8PP-01 12 111758381 111758381 C T CUX2 Silent p.G856G 0.40 TCGA-VQ-A8PP-01 12 11338799 11338799 A - TAS2R42 Frame_Shift_Del p.S249Pfs*18 0.34 TCGA-VQ-A8PP-01 12 113425064 113425064 A - OAS2 Frame_Shift_Del p.N135Ifs*15 0.18 TCGA-VQ-A8PP-01 12 114392943 114392943 A G RBM19 Missense_Mutation p.V305A 0.26 tolerated(0.19) benign(0.062) TCGA-VQ-A8PP-01 12 116457657 116457657 T - MED13L Frame_Shift_Del p.K249Rfs*23 0.21 TCGA-VQ-A8PP-01 12 117962927 117962927 C A KSR2 Missense_Mutation p.S650I 0.17 deleterious(0) probably_damaging(0.986) TCGA-VQ-A8PP-01 12 118577262 118577262 G A PEBP1 Nonsense_Mutation p.W84* 0.10 TCGA-VQ-A8PP-01 12 120608018 120608018 C T GCN1L1 Missense_Mutation p.A492T 0.32 possibly_damaging(0.662) TCGA-VQ-A8PP-01 12 121206150 121206150 G A SPPL3 Missense_Mutation p.P251S 0.23 deleterious(0) probably_damaging(1) TCGA-VQ-A8PP-01 12 121471391 121471391 C A OASL Silent p.L118L 0.27 TCGA-VQ-A8PP-01 12 121868343 121868343 G A KDM2B Intron 0.32 TCGA-VQ-A8PP-01 12 122017957 122017957 T - KDM2B Intron 0.21 TCGA-VQ-A8PP-01 12 122845629 122845629 G A CLIP1 Silent p.N294N 0.27 TCGA-VQ-A8PP-01 12 12311996 12311996 C T LRP6 Missense_Mutation p.R853H 0.34 tolerated(0.43) benign(0.036) TCGA-VQ-A8PP-01 12 123983225 123983225 T C RILPL1 Missense_Mutation p.I223V 0.34 tolerated(0.13) benign(0.403) TCGA-VQ-A8PP-01 12 124081201 124081201 T G TMED2 Silent p.A177A 0.31 TCGA-VQ-A8PP-01 12 12938554 12938554 C A APOLD1 Intron 0.37 TCGA-VQ-A8PP-01 12 130941151 130941151 C T RIMBP2 Missense_Mutation p.G66D 0.20 tolerated(0.05) probably_damaging(0.986) TCGA-VQ-A8PP-01 12 132329869 132329869 A G MMP17 Missense_Mutation p.D360G 0.17 tolerated(0.18) benign(0.009) TCGA-VQ-A8PP-01 12 132471081 132471081 C A EP400 Missense_Mutation p.P651H 0.24 unknown(0) TCGA-VQ-A8PP-01 12 133732919 133732919 A G ZNF10 Missense_Mutation p.R363G 0.27 tolerated(0.1) probably_damaging(0.966) TCGA-VQ-A8PP-01 12 1346049 1346049 C T ERC1 Silent p.N822N 0.16 TCGA-VQ-A8PP-01 12 14664511 14664511 G A PLBD1 Missense_Mutation p.R327C 0.27 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PP-01 12 25380283 25380283 C T KRAS Missense_Mutation p.A59T 0.24 tolerated(0.06) possibly_damaging(0.528) TCGA-VQ-A8PP-01 12 2968860 2968860 A G FOXM1 Intron 0.23 TCGA-VQ-A8PP-01 12 34179326 34179326 T - ALG10 Frame_Shift_Del p.S302Pfs*17 0.21 TCGA-VQ-A8PP-01 12 394585 394585 C T KDM5A 3'UTR 0.31 TCGA-VQ-A8PP-01 12 39724673 39724673 A G KIF21A Missense_Mutation p.L1065P 0.18 deleterious(0.02) probably_damaging(0.982) TCGA-VQ-A8PP-01 12 40618995 40618995 T C LRRK2 Missense_Mutation p.V21A 0.44 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-VQ-A8PP-01 12 41422962 41422962 T C CNTN1 Missense_Mutation p.V974A 0.27 deleterious(0) possibly_damaging(0.831) TCGA-VQ-A8PP-01 12 41967651 41967651 A G PDZRN4 Missense_Mutation p.T1024A 0.14 tolerated(0.14) benign(0.008) TCGA-VQ-A8PP-01 12 464404 464404 G A KDM5A Nonsense_Mutation p.R264* 0.30 TCGA-VQ-A8PP-01 12 46765158 46765158 T C SLC38A2 5'UTR 0.28 TCGA-VQ-A8PP-01 12 4736154 4736154 G - AKAP3 Frame_Shift_Del p.R639Gfs*15 0.25 TCGA-VQ-A8PP-01 12 48104653 48104653 A G ENDOU Missense_Mutation p.W389R 0.31 deleterious(0) probably_damaging(1) TCGA-VQ-A8PP-01 12 49427425 49427425 C G KMT2D Missense_Mutation p.G3688A 0.25 possibly_damaging(0.639) TCGA-VQ-A8PP-01 12 49434492 49434492 G - KMT2D Frame_Shift_Del p.P2354Lfs*30 0.32 TCGA-VQ-A8PP-01 12 49521600 49521600 G A TUBA1B 3'UTR 0.33 TCGA-VQ-A8PP-01 12 50348034 50348034 C T AQP2 Missense_Mutation p.R153C 0.15 deleterious(0) probably_damaging(0.981) TCGA-VQ-A8PP-01 12 50399072 50399072 C T RACGAP1 Missense_Mutation p.G131D 0.36 tolerated(0.63) benign(0.101) TCGA-VQ-A8PP-01 12 51128872 51128872 C T DIP2B Missense_Mutation p.R1354C 0.25 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PP-01 12 51639976 51639976 A T DAZAP2 3'Flank 0.14 TCGA-VQ-A8PP-01 12 52758789 52758789 C A KRT85 Nonsense_Mutation p.E196* 0.21 TCGA-VQ-A8PP-01 12 52963695 52963695 A G KRT74 Missense_Mutation p.L361P 0.22 deleterious(0) probably_damaging(0.988) TCGA-VQ-A8PP-01 12 53454305 53454305 C A TENC1 Missense_Mutation p.L922M 0.44 tolerated(0.1) probably_damaging(0.999) TCGA-VQ-A8PP-01 12 53514582 53514582 T G SOAT2 Missense_Mutation p.L351R 0.21 deleterious(0) probably_damaging(1) TCGA-VQ-A8PP-01 12 54970370 54970370 G T PDE1B Missense_Mutation p.Q464H 0.37 tolerated(0.07) benign(0.395) TCGA-VQ-A8PP-01 12 55524524 55524524 A - OR9K2 Frame_Shift_Del p.K326Nfs*3 0.24 TCGA-VQ-A8PP-01 12 55759392 55759392 C A OR6C75 Missense_Mutation p.F166L 0.21 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-VQ-A8PP-01 12 56505308 56505310 AAG - PA2G4 In_Frame_Del p.K373del 0.19 TCGA-VQ-A8PP-01 12 56514991 56514991 C - ZC3H10 Frame_Shift_Del p.P217Lfs*24 0.23 TCGA-VQ-A8PP-01 12 56716455 56716455 C T PAN2 Missense_Mutation p.G865R 0.23 tolerated(0.22) probably_damaging(1) TCGA-VQ-A8PP-01 12 56755066 56755066 C - APOF Frame_Shift_Del p.W309Gfs*3 0.22 TCGA-VQ-A8PP-01 12 56818627 56818627 C T TIMELESS Missense_Mutation p.R596Q 0.25 tolerated(0.11) benign(0.234) TCGA-VQ-A8PP-01 12 57944104 57944104 G A KIF5A Missense_Mutation p.R17Q 0.26 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PP-01 12 62954511 62954511 A - MON2 Frame_Shift_Del p.K1218Nfs*2 0.26 TCGA-VQ-A8PP-01 12 63195641 63195641 A G PPM1H Silent p.H237H 0.21 TCGA-VQ-A8PP-01 12 6438632 6438632 G A TNFRSF1A Missense_Mutation p.A405V 0.36 tolerated(0.14) benign(0.184) TCGA-VQ-A8PP-01 12 6666713 6666713 C T NOP2 Missense_Mutation p.A662T 0.14 tolerated(0.14) benign(0.303) TCGA-VQ-A8PP-01 12 66765599 66765599 G A GRIP1 Missense_Mutation p.H911Y 0.25 tolerated(0.77) benign(0.037) TCGA-VQ-A8PP-01 12 69120384 69120384 G A NUP107 Missense_Mutation p.G561E 0.12 deleterious(0) probably_damaging(1) TCGA-VQ-A8PP-01 12 69233177 69233201 TCTGAGAAAGCCAAACTGGAAAACT - MDM2 Frame_Shift_Del p.S348Qfs*17 0.19 TCGA-VQ-A8PP-01 12 6933887 6933887 G A GPR162 Missense_Mutation p.A275T 0.40 tolerated(0.78) benign(0.039) TCGA-VQ-A8PP-01 12 6935831 6935831 G A GPR162 Missense_Mutation p.R410Q 0.36 deleterious(0.01) possibly_damaging(0.715) TCGA-VQ-A8PP-01 12 72057248 72057250 CCG - ZFC3H1 In_Frame_Del p.G48del 0.32 TCGA-VQ-A8PP-01 12 7527958 7527958 A T CD163L1 Missense_Mutation p.S974T 0.18 tolerated(0.06) benign(0.038) TCGA-VQ-A8PP-01 12 7531760 7531760 T C CD163L1 Missense_Mutation p.R729G 0.24 deleterious(0) probably_damaging(0.988) TCGA-VQ-A8PP-01 12 75804255 75804255 A - GLIPR1L2 Frame_Shift_Del p.K94Nfs*105 0.24 TCGA-VQ-A8PP-01 12 7947796 7947796 G A NANOG 3'UTR 0.11 TCGA-VQ-A8PP-01 12 8074170 8074170 C T SLC2A3 Missense_Mutation p.A444T 0.19 tolerated(0.12) benign(0.003) TCGA-VQ-A8PP-01 12 81102786 81102786 C T MYF6 3'UTR 0.38 TCGA-VQ-A8PP-01 12 81624857 81624857 T - ACSS3 Frame_Shift_Del p.S514Qfs*45 0.27 TCGA-VQ-A8PP-01 12 8691893 8691893 C T CLEC4E Missense_Mutation p.R47H 0.28 tolerated(1) benign(0.001) TCGA-VQ-A8PP-01 12 9000239 9000239 C T A2ML1 Missense_Mutation p.A593V 0.30 tolerated(0.16) benign(0.226) TCGA-VQ-A8PP-01 12 9004837 9004837 A G A2ML1 Missense_Mutation p.Y832C 0.30 deleterious(0) possibly_damaging(0.827) TCGA-VQ-A8PP-01 12 936343 936343 T C WNK1 Silent p.F356F 0.26 TCGA-VQ-A8PP-01 12 94972269 94972269 C A TMCC3 Silent p.T344T 0.31 TCGA-VQ-A8PP-01 12 97051861 97051861 A C C12orf55 Missense_Mutation p.I1768L 0.27 tolerated(0.5) benign(0.013) TCGA-VQ-A8PP-01 13 101287114 101287114 C T TMTC4 Missense_Mutation p.R484Q 0.19 tolerated(0.19) benign(0.024) TCGA-VQ-A8PP-01 13 101833423 101833423 G - NALCN Intron 0.10 TCGA-VQ-A8PP-01 13 107145311 107145311 G A EFNB2 3'UTR 0.24 TCGA-VQ-A8PP-01 13 107211857 107211857 G A ARGLU1 Missense_Mutation p.R166C 0.24 deleterious(0) possibly_damaging(0.835) TCGA-VQ-A8PP-01 13 110438101 110438101 G A IRS2 Silent p.N100N 0.17 TCGA-VQ-A8PP-01 13 110829314 110829314 G A COL4A1 Silent p.V929V 0.12 TCGA-VQ-A8PP-01 13 113530157 113530157 C T ATP11A Silent p.L1077L 0.26 TCGA-VQ-A8PP-01 13 113742089 113742089 G A MCF2L Silent p.A888A 0.16 TCGA-VQ-A8PP-01 13 113742090 113742090 C T MCF2L Missense_Mutation p.R889C 0.13 deleterious(0) probably_damaging(0.979) TCGA-VQ-A8PP-01 13 114138220 114138220 T C DCUN1D2 Missense_Mutation p.H52R 0.08 tolerated(0.13) benign(0.025) TCGA-VQ-A8PP-01 13 114188419 114188419 C T TMCO3 Missense_Mutation p.A468V 0.19 tolerated(0.58) benign(0.013) TCGA-VQ-A8PP-01 13 114277591 114277591 C A TFDP1 Missense_Mutation p.A59D 0.36 tolerated(0.43) benign(0.003) TCGA-VQ-A8PP-01 13 20426273 20426273 A G ZMYM5 Silent p.P16P 0.19 TCGA-VQ-A8PP-01 13 21295777 21295777 T A IL17D Missense_Mutation p.I98N 0.18 deleterious(0) probably_damaging(0.985) TCGA-VQ-A8PP-01 13 23903642 23903642 A - SACS 3'UTR 0.29 TCGA-VQ-A8PP-01 13 23906266 23906266 C T SACS Missense_Mutation p.V3917I 0.04 probably_damaging(0.97) TCGA-VQ-A8PP-01 13 23909222 23909222 T - SACS Frame_Shift_Del p.K2931Nfs*22 0.23 TCGA-VQ-A8PP-01 13 23915390 23915390 A C SACS Silent p.A875A 0.21 TCGA-VQ-A8PP-01 13 25672306 25672306 A - PABPC3 3'UTR 0.20 TCGA-VQ-A8PP-01 13 25743979 25743979 G T AMER2 Silent p.T593T 0.15 TCGA-VQ-A8PP-01 13 25840368 25840368 G A MTMR6 Nonsense_Mutation p.R121* 0.16 TCGA-VQ-A8PP-01 13 27259967 27259967 C T WASF3 Silent p.N498N 0.35 TCGA-VQ-A8PP-01 13 28537450 28537452 CTT - CDX2 In_Frame_Del p.K248del 0.23 TCGA-VQ-A8PP-01 13 28622433 28622433 T C FLT3 Missense_Mutation p.K395R 0.19 tolerated(0.23) benign(0) TCGA-VQ-A8PP-01 13 28830589 28830589 G A PAN3 Silent p.P387P 0.19 TCGA-VQ-A8PP-01 13 30097554 30097554 C T SLC7A1 Missense_Mutation p.A300T 0.28 deleterious(0.01) probably_damaging(0.992) TCGA-VQ-A8PP-01 13 31480777 31480777 G A MEDAG Missense_Mutation p.R42H 0.20 tolerated(0.13) possibly_damaging(0.579) TCGA-VQ-A8PP-01 13 31713199 31713199 G A HSPH1 Silent p.L676L 0.08 TCGA-VQ-A8PP-01 13 32348826 32348826 A C RXFP2 Silent p.I189I 0.19 TCGA-VQ-A8PP-01 13 32813471 32813471 C T FRY Silent p.A2167A 0.13 TCGA-VQ-A8PP-01 13 32823675 32823675 G A FRY Missense_Mutation p.G2341R 0.27 deleterious(0) probably_damaging(1) TCGA-VQ-A8PP-01 13 32912338 32912339 TG - BRCA2 Frame_Shift_Del p.V1283Kfs*2 0.14 TCGA-VQ-A8PP-01 13 33016694 33016695 - A N4BP2L2 Frame_Shift_Ins p.L660Ffs*3 0.20 TCGA-VQ-A8PP-01 13 33309428 33309428 A G PDS5B Silent p.V789V 0.14 TCGA-VQ-A8PP-01 13 33590986 33590986 G A KL Silent p.T136T 0.28 TCGA-VQ-A8PP-01 13 36049595 36049595 G A MAB21L1 Silent p.S227S 0.18 TCGA-VQ-A8PP-01 13 37011868 37011868 G A CCNA1 Missense_Mutation p.G134R 0.16 tolerated(0.06) benign(0.235) TCGA-VQ-A8PP-01 13 41323314 41323314 T - MRPS31 Frame_Shift_Del p.E307Rfs*48 0.13 TCGA-VQ-A8PP-01 13 41767457 41767457 G A KBTBD7 Missense_Mutation p.P313S 0.19 tolerated(0.06) benign(0.169) TCGA-VQ-A8PP-01 13 41941641 41941641 C T NAA16 Missense_Mutation p.R536C 0.06 tolerated(0.16) benign(0.258) TCGA-VQ-A8PP-01 13 42874414 42874414 C T AKAP11 Missense_Mutation p.T511I 0.13 tolerated(0.25) benign(0.002) TCGA-VQ-A8PP-01 13 43681415 43681428 AGAGGGGACTTCGA GAGGGGACTTCG DNAJC15 3'UTR 0.20 TCGA-VQ-A8PP-01 13 47315820 47315820 G A LRCH1 Missense_Mutation p.R710H 0.21 tolerated(0.19) benign(0.033) TCGA-VQ-A8PP-01 13 48651308 48651308 C T MED4 Silent p.T260T 0.11 TCGA-VQ-A8PP-01 13 49749520 49749520 T C FNDC3A Missense_Mutation p.V458A 0.25 tolerated(0.28) benign(0.001) TCGA-VQ-A8PP-01 13 51969452 51969452 C T INTS6 Missense_Mutation p.M199I 0.10 tolerated(0.06) benign(0.022) TCGA-VQ-A8PP-01 13 52439838 52439838 G A CCDC70 Nonsense_Mutation p.W108* 0.20 TCGA-VQ-A8PP-01 13 58207448 58207448 T C PCDH17 Silent p.A256A 0.15 TCGA-VQ-A8PP-01 13 61985437 61985437 A C PCDH20 Missense_Mutation p.L932R 0.17 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PP-01 13 67799599 67799599 T C PCDH9 Missense_Mutation p.S992G 0.19 deleterious(0) probably_damaging(0.976) TCGA-VQ-A8PP-01 13 70514225 70514225 C T KLHL1 Missense_Mutation p.A321T 0.20 deleterious(0) probably_damaging(0.991) TCGA-VQ-A8PP-01 13 73505380 73505380 A G PIBF1 Missense_Mutation p.D603G 0.06 tolerated(0.3) benign(0.066) TCGA-VQ-A8PP-01 13 75884196 75884196 A G TBC1D4 Silent p.D825D 0.15 TCGA-VQ-A8PP-01 13 76055821 76055821 G T TBC1D4 Missense_Mutation p.P28H 0.25 deleterious_low_confidence(0.03) benign(0.149) TCGA-VQ-A8PP-01 13 77714221 77714221 G A MYCBP2 Silent p.G2455G 0.19 TCGA-VQ-A8PP-01 13 77742592 77742592 A G MYCBP2 Missense_Mutation p.Y1991H 0.06 probably_damaging(0.993) TCGA-VQ-A8PP-01 13 84453453 84453453 C T SLITRK1 3'UTR 0.23 TCGA-VQ-A8PP-01 13 84454943 84454943 C A SLITRK1 Missense_Mutation p.A234S 0.22 deleterious(0.03) probably_damaging(0.911) TCGA-VQ-A8PP-01 13 96743493 96743493 G A HS6ST3 Missense_Mutation p.R126H 0.39 deleterious(0) possibly_damaging(0.773) TCGA-VQ-A8PP-01 13 98896956 98896956 T - FARP1 Intron 0.20 TCGA-VQ-A8PP-01 13 99047639 99047639 C T FARP1 Silent p.D441D 0.29 TCGA-VQ-A8PP-01 14 102505430 102505430 A G DYNC1H1 Missense_Mutation p.I3767V 0.25 probably_damaging(0.939) TCGA-VQ-A8PP-01 14 103450074 103450074 A G CDC42BPB Missense_Mutation p.V237A 0.11 deleterious(0) probably_damaging(1) TCGA-VQ-A8PP-01 14 104194115 104194115 C T ZFYVE21 Silent p.C74C 0.20 TCGA-VQ-A8PP-01 14 104642925 104642925 C - KIF26A Frame_Shift_Del p.R1269Gfs*7 0.19 TCGA-VQ-A8PP-01 14 105409549 105409549 A G AHNAK2 Missense_Mutation p.L4080P 0.35 probably_damaging(0.988) TCGA-VQ-A8PP-01 14 105413937 105413937 G A AHNAK2 Silent p.D2617D 0.05 TCGA-VQ-A8PP-01 14 105920555 105920555 A G MTA1 Missense_Mutation p.Y153C 0.08 deleterious(0) probably_damaging(1) TCGA-VQ-A8PP-01 14 106054427 106054427 T C IGHA2 Silent p.R102R 0.16 TCGA-VQ-A8PP-01 14 106174697 106174697 T C IGHA1 Silent p.P102P 0.09 TCGA-VQ-A8PP-01 14 20002256 20002256 C T POTEM Missense_Mutation p.R389K 0.17 tolerated(0.06) possibly_damaging(0.535) TCGA-VQ-A8PP-01 14 20296017 20296017 A G OR4N2 Missense_Mutation p.N137S 0.07 tolerated(0.67) benign(0.007) TCGA-VQ-A8PP-01 14 21458666 21458666 C T METTL17 Silent p.T91T 0.23 TCGA-VQ-A8PP-01 14 21469568 21469568 C T SLC39A2 Missense_Mutation p.R254W 0.27 tolerated(0.16) benign(0) TCGA-VQ-A8PP-01 14 21543296 21543296 C T ARHGEF40 Silent p.A469A 0.31 TCGA-VQ-A8PP-01 14 21681229 21681229 C T HNRNPC Missense_Mutation p.R151Q 0.25 tolerated(0.11) benign(0.019) TCGA-VQ-A8PP-01 14 21896353 21896354 - A CHD8 Frame_Shift_Ins p.E426* 0.23 TCGA-VQ-A8PP-01 14 21961037 21961037 G A TOX4 Missense_Mutation p.R421Q 0.10 tolerated(0.15) benign(0.13) TCGA-VQ-A8PP-01 14 22539347 22539347 T A TRAV22 Silent p.I69I 0.19 TCGA-VQ-A8PP-01 14 23370907 23370907 G T RBM23 3'UTR 0.27 TCGA-VQ-A8PP-01 14 23538776 23538776 T - ACIN1 Frame_Shift_Del p.N783Mfs*89 0.11 TCGA-VQ-A8PP-01 14 23794494 23794494 A - BCL2L2-PABPN1 Frame_Shift_Del 0.23 TCGA-VQ-A8PP-01 14 24112401 24112401 G A DHRS2 Missense_Mutation p.S154N 0.24 tolerated(0.18) benign(0.118) TCGA-VQ-A8PP-01 14 24546586 24546586 G A CPNE6 Missense_Mutation p.R508Q 0.20 deleterious(0.03) probably_damaging(0.992) TCGA-VQ-A8PP-01 14 24546867 24546867 C T CPNE6 Silent p.Y534Y 0.27 TCGA-VQ-A8PP-01 14 24568859 24568859 G A PCK2 Silent p.R315R 0.08 TCGA-VQ-A8PP-01 14 24610346 24610346 C T EMC9 Silent p.L56L 0.27 TCGA-VQ-A8PP-01 14 24659625 24659625 G A TM9SF1 Missense_Mutation p.T463I 0.28 tolerated(0.09) possibly_damaging(0.583) TCGA-VQ-A8PP-01 14 25042848 25042848 G - CTSG Frame_Shift_Del p.L255Cfs*3 0.21 TCGA-VQ-A8PP-01 14 35579069 35579069 G A PPP2R3C Silent p.Y120Y 0.18 TCGA-VQ-A8PP-01 14 38679412 38679412 T C SSTR1 Missense_Mutation p.V273A 0.28 deleterious(0) probably_damaging(0.959) TCGA-VQ-A8PP-01 14 45374869 45374869 A G C14orf28 3'UTR 0.27 TCGA-VQ-A8PP-01 14 45673247 45673247 A C MIS18BP1 3'UTR 0.30 TCGA-VQ-A8PP-01 14 47121002 47121002 C T RPL10L 5'UTR 0.32 TCGA-VQ-A8PP-01 14 50788236 50788236 T C ATP5S Silent p.L26L 0.21 TCGA-VQ-A8PP-01 14 51383754 51383754 T C PYGL Missense_Mutation p.I309V 0.31 tolerated(0.26) benign(0.226) TCGA-VQ-A8PP-01 14 55255768 55255768 T - SAMD4A 3'UTR 0.44 TCGA-VQ-A8PP-01 14 58060734 58060734 G T SLC35F4 Missense_Mutation p.S107Y 0.26 deleterious(0.02) benign(0.438) TCGA-VQ-A8PP-01 14 58563674 58563674 C T C14orf37 Silent p.E619E 0.28 TCGA-VQ-A8PP-01 14 58698910 58698910 A - ACTR10 Frame_Shift_Del p.A335Hfs*63 0.28 TCGA-VQ-A8PP-01 14 58814366 58814366 T C ARID4A Missense_Mutation p.Y392H 0.20 deleterious(0) probably_damaging(1) TCGA-VQ-A8PP-01 14 63447744 63447744 A G KCNH5 Missense_Mutation p.V263A 0.28 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8PP-01 14 63511934 63511934 C T KCNH5 5'UTR 0.15 TCGA-VQ-A8PP-01 14 64519145 64519145 T - SYNE2 Frame_Shift_Del p.F2840Lfs*3 0.17 TCGA-VQ-A8PP-01 14 65035126 65035126 A - PPP1R36 Frame_Shift_Del p.N167Tfs*12 0.22 TCGA-VQ-A8PP-01 14 65216762 65216762 A G SPTB Missense_Mutation p.L2238P 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A8PP-01 14 65242042 65242042 G A SPTB Missense_Mutation p.A1548V 0.24 deleterious(0.03) benign(0.316) TCGA-VQ-A8PP-01 14 69445678 69445678 C T ACTN1 Silent p.Q32Q 0.27 TCGA-VQ-A8PP-01 14 73441647 73441647 C T ZFYVE1 Silent p.T609T 0.22 TCGA-VQ-A8PP-01 14 73460026 73460026 C T ZFYVE1 Missense_Mutation p.R343Q 0.13 deleterious(0.01) possibly_damaging(0.454) TCGA-VQ-A8PP-01 14 74180121 74180121 G A PNMA1 Silent p.Y74Y 0.29 TCGA-VQ-A8PP-01 14 74206606 74206606 G - ELMSAN1 Frame_Shift_Del p.Q36Sfs*6 0.26 TCGA-VQ-A8PP-01 14 74825226 74825226 T C VRTN Silent p.A580A 0.13 TCGA-VQ-A8PP-01 14 77572133 77572133 G A CIPC Missense_Mutation p.A28T 0.26 tolerated(0.63) benign(0.007) TCGA-VQ-A8PP-01 14 78217748 78217748 T - SNW1 Frame_Shift_Del p.M82Cfs*44 0.27 TCGA-VQ-A8PP-01 14 81422112 81422112 G A TSHR Missense_Mutation p.E30K 0.16 tolerated(0.2) benign(0.004) TCGA-VQ-A8PP-01 14 91636402 91636402 G A C14orf159 Missense_Mutation p.A105T 0.28 tolerated(1) benign(0.001) TCGA-VQ-A8PP-01 14 91700766 91700766 C T GPR68 Missense_Mutation p.R210H 0.19 deleterious(0.03) benign(0.442) TCGA-VQ-A8PP-01 14 92472197 92472197 T - TRIP11 Frame_Shift_Del p.N708Tfs*7 0.21 TCGA-VQ-A8PP-01 14 92608645 92608645 G A CPSF2 Missense_Mutation p.A267T 0.20 tolerated(0.09) probably_damaging(0.95) TCGA-VQ-A8PP-01 14 92909774 92909774 C T SLC24A4 Nonsense_Mutation p.R205* 0.41 TCGA-VQ-A8PP-01 14 93708580 93708580 T C BTBD7 3'UTR 0.38 TCGA-VQ-A8PP-01 14 94088187 94088187 G A UNC79 Silent p.A1359A 0.31 TCGA-VQ-A8PP-01 14 94741789 94741789 G A PPP4R4 Missense_Mutation p.R843H 0.06 deleterious_low_confidence(0.01) benign(0.034) TCGA-VQ-A8PP-01 14 94849260 94849260 A T SERPINA1 Missense_Mutation p.N105K 0.25 tolerated(1) benign(0.027) TCGA-VQ-A8PP-01 14 95921998 95921998 C T SYNE3 Missense_Mutation p.G285S 0.28 tolerated(0.21) benign(0.265) TCGA-VQ-A8PP-01 15 101718823 101718824 - G CHSY1 Frame_Shift_Ins p.R394Sfs*35 0.23 TCGA-VQ-A8PP-01 15 25514970 25514970 G A SNORD115-48 RNA 0.10 TCGA-VQ-A8PP-01 15 25969079 25969079 C T ATP10A Missense_Mutation p.A357T 0.17 deleterious(0.02) possibly_damaging(0.734) TCGA-VQ-A8PP-01 15 28096568 28096568 C T OCA2 Silent p.P766P 0.24 TCGA-VQ-A8PP-01 15 28375400 28375400 A G HERC2 Silent p.V4237V 0.26 TCGA-VQ-A8PP-01 15 35045331 35045331 C T GJD2 Missense_Mutation p.R105Q 0.23 tolerated(0.4) benign(0.439) TCGA-VQ-A8PP-01 15 37388546 37388546 C T MEIS2 Missense_Mutation p.G111R 0.26 deleterious(0.05) possibly_damaging(0.836) TCGA-VQ-A8PP-01 15 40293312 40293312 C T EIF2AK4 Missense_Mutation p.H1016Y 0.11 deleterious(0.02) benign(0.209) TCGA-VQ-A8PP-01 15 40580919 40580919 G T PLCB2 Silent p.L1185L 0.26 TCGA-VQ-A8PP-01 15 42003137 42003137 C - MGA Frame_Shift_Del p.P893Lfs*40 0.27 TCGA-VQ-A8PP-01 15 42139714 42139714 G A PLA2G4B Silent p.S940S 0.33 TCGA-VQ-A8PP-01 15 42162747 42162747 G A SPTBN5 Missense_Mutation p.S1820L 0.42 benign(0.029) TCGA-VQ-A8PP-01 15 42703534 42703534 C T CAPN3 Silent p.N810N 0.31 TCGA-VQ-A8PP-01 15 43896605 43896605 C T STRC Missense_Mutation p.R1391H 0.14 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8PP-01 15 45389462 45389462 A G DUOX2 Missense_Mutation p.V1274A 0.23 deleterious(0) benign(0.024) TCGA-VQ-A8PP-01 15 45412439 45412439 C T DUOXA1 Missense_Mutation p.A212T 0.24 tolerated(0.24) benign(0.16) TCGA-VQ-A8PP-01 15 48744853 48744853 C T FBN1 Silent p.V1817V 0.28 TCGA-VQ-A8PP-01 15 49329896 49329896 G T SECISBP2L Missense_Mutation p.P32H 0.07 deleterious_low_confidence(0) possibly_damaging(0.896) TCGA-VQ-A8PP-01 15 51217363 51217363 C T AP4E1 Silent p.C163C 0.21 TCGA-VQ-A8PP-01 15 51696899 51696899 G A GLDN Missense_Mutation p.G535D 0.12 deleterious(0.01) probably_damaging(0.996) TCGA-VQ-A8PP-01 15 52486205 52486205 G A MYO5C Missense_Mutation p.T1708I 0.15 tolerated(0.1) benign(0.012) TCGA-VQ-A8PP-01 15 52689530 52689530 G A MYO5A Missense_Mutation p.A396V 0.40 tolerated(0.26) probably_damaging(1) TCGA-VQ-A8PP-01 15 59179522 59179522 T C SLTM Missense_Mutation p.T865A 0.23 tolerated(0.43) benign(0.035) TCGA-VQ-A8PP-01 15 59323840 59323842 AGA - RNF111 In_Frame_Del p.E275del 0.26 TCGA-VQ-A8PP-01 15 62165551 62165551 G A VPS13C Missense_Mutation p.A3491V 0.24 deleterious(0) possibly_damaging(0.786) TCGA-VQ-A8PP-01 15 62993383 62993383 G A TLN2 Missense_Mutation p.G556R 0.13 deleterious(0) probably_damaging(0.978) TCGA-VQ-A8PP-01 15 63069071 63069071 G - TLN2 Frame_Shift_Del p.G1827Afs*10 0.15 TCGA-VQ-A8PP-01 15 64966199 64966199 T C ZNF609 Silent p.P382P 0.40 TCGA-VQ-A8PP-01 15 65622965 65622965 C T IGDCC3 Missense_Mutation p.R559H 0.18 deleterious(0.04) possibly_damaging(0.479) TCGA-VQ-A8PP-01 15 66786804 66786804 C T SNAPC5 Silent p.E89E 0.17 TCGA-VQ-A8PP-01 15 66812933 66812933 A - ZWILCH Frame_Shift_Del p.N177Ifs*4 0.27 TCGA-VQ-A8PP-01 15 68624345 68624345 C T ITGA11 Missense_Mutation p.R541Q 0.25 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PP-01 15 68649490 68649490 G A ITGA11 Missense_Mutation p.R250C 0.25 tolerated(0.18) possibly_damaging(0.618) TCGA-VQ-A8PP-01 15 69331219 69331219 G A NOX5 Missense_Mutation p.R465Q 0.25 deleterious(0) probably_damaging(0.991) TCGA-VQ-A8PP-01 15 71549049 71549049 C T THSD4 Missense_Mutation p.A337V 0.24 deleterious(0.02) benign(0.029) TCGA-VQ-A8PP-01 15 74659800 74659800 G A CYP11A1 Missense_Mutation p.R43C 0.40 deleterious(0.04) possibly_damaging(0.586) TCGA-VQ-A8PP-01 15 75341541 75341541 G A PPCDC Missense_Mutation p.V194I 0.24 tolerated(0.91) benign(0) TCGA-VQ-A8PP-01 15 76225137 76225137 T C FBXO22 Silent p.A302A 0.33 TCGA-VQ-A8PP-01 15 77906740 77906740 G A LINGO1 Silent p.G503G 0.34 TCGA-VQ-A8PP-01 15 80191310 80191310 A G ST20 Missense_Mutation p.L68P 0.34 deleterious_low_confidence(0.01) benign(0.4) TCGA-VQ-A8PP-01 15 81234363 81234363 C A KIAA1199 Missense_Mutation p.P1194Q 0.33 tolerated(0.08) probably_damaging(1) TCGA-VQ-A8PP-01 15 81274347 81274348 CT - MESDC2 Frame_Shift_Del p.E130Gfs*16 0.18 TCGA-VQ-A8PP-01 15 82336624 82336624 G A MEX3B Missense_Mutation p.T196M 0.32 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PP-01 15 82336937 82336937 G A MEX3B Silent p.L92L 0.30 TCGA-VQ-A8PP-01 15 82512474 82512474 C A EFTUD1 Missense_Mutation p.E463D 0.27 tolerated(0.22) benign(0.001) TCGA-VQ-A8PP-01 15 82575093 82575093 G A FAM154B Missense_Mutation p.R296H 0.10 deleterious(0.03) benign(0.192) TCGA-VQ-A8PP-01 15 83222231 83222231 C T CPEB1 Missense_Mutation p.R350Q 0.34 tolerated(0.17) probably_damaging(0.927) TCGA-VQ-A8PP-01 15 83331572 83331572 C T AP3B2 Missense_Mutation p.G884R 0.19 tolerated(0.35) probably_damaging(0.956) TCGA-VQ-A8PP-01 15 85461790 85461790 A G SLC28A1 Missense_Mutation p.I277M 0.04 tolerated(1) benign(0.014) TCGA-VQ-A8PP-01 15 86822881 86822881 G A AGBL1 Missense_Mutation p.R650H 0.28 tolerated(0.58) benign(0.017) TCGA-VQ-A8PP-01 15 89010478 89010478 G - MRPL46 Frame_Shift_Del p.P44Hfs*15 0.11 TCGA-VQ-A8PP-01 15 89422471 89422471 C T HAPLN3 Missense_Mutation p.G175R 0.24 deleterious(0) probably_damaging(1) TCGA-VQ-A8PP-01 15 89738673 89738673 C T ABHD2 3'UTR 0.50 TCGA-VQ-A8PP-01 15 89872009 89872009 C T POLG Silent p.V359V 0.28 TCGA-VQ-A8PP-01 15 90021157 90021157 C T RHCG Missense_Mutation p.A296T 0.25 tolerated(0.06) possibly_damaging(0.477) TCGA-VQ-A8PP-01 15 90146117 90146118 - A TICRR Frame_Shift_Ins p.E889Rfs*47 0.29 TCGA-VQ-A8PP-01 15 90799097 90799097 C T TTLL13 Silent p.R176R 0.19 TCGA-VQ-A8PP-01 15 91432761 91432761 T C FES Missense_Mutation p.V274A 0.29 tolerated(0.69) benign(0.001) TCGA-VQ-A8PP-01 15 91454463 91454463 G A MAN2A2 Silent p.S646S 0.11 TCGA-VQ-A8PP-01 16 10861854 10861854 C A NUBP1 Missense_Mutation p.S290Y 0.26 deleterious(0) probably_damaging(0.968) TCGA-VQ-A8PP-01 16 1308464 1308464 C T TPSD1 3'Flank 0.26 TCGA-VQ-A8PP-01 16 1391349 1391349 G A BAIAP3 Missense_Mutation p.R232Q 0.20 tolerated(0.18) benign(0.046) TCGA-VQ-A8PP-01 16 15818427 15818427 G A NDE1 3'UTR 0.29 TCGA-VQ-A8PP-01 16 15961255 15961255 T G FOPNL 3'UTR 0.26 TCGA-VQ-A8PP-01 16 1818910 1818910 G A MAPK8IP3 3'UTR 0.29 TCGA-VQ-A8PP-01 16 19236147 19236147 C T SYT17 Silent p.S405S 0.23 TCGA-VQ-A8PP-01 16 19838352 19838352 G A IQCK Missense_Mutation p.R232H 0.09 deleterious(0) probably_damaging(1) TCGA-VQ-A8PP-01 16 2093709 2093709 T C NTHL1 Missense_Mutation p.K190E 0.47 deleterious(0) probably_damaging(0.953) TCGA-VQ-A8PP-01 16 21214561 21214561 T - ZP2 Frame_Shift_Del p.K328Nfs*9 0.17 TCGA-VQ-A8PP-01 16 21475115 21475115 G A CTD-2547E10.2 RNA 0.30 TCGA-VQ-A8PP-01 16 23690425 23690425 T - PLK1 Frame_Shift_Del p.L59Wfs*56 0.27 TCGA-VQ-A8PP-01 16 23847621 23847621 G A PRKCB Missense_Mutation p.R42H 0.33 deleterious(0.05) possibly_damaging(0.722) TCGA-VQ-A8PP-01 16 24580143 24580143 G A RBBP6 Missense_Mutation p.R711H 0.24 deleterious_low_confidence(0) unknown(0) TCGA-VQ-A8PP-01 16 2487281 2487281 C T CCNF Silent p.A166A 0.40 TCGA-VQ-A8PP-01 16 27448813 27448813 G A IL21R Missense_Mutation p.D53N 0.14 tolerated(0.09) benign(0.168) TCGA-VQ-A8PP-01 16 27509009 27509009 T - GTF3C1 Frame_Shift_Del p.S767Vfs*7 0.22 TCGA-VQ-A8PP-01 16 2815985 2815985 G A SRRM2 Missense_Mutation p.G1819D 0.34 unknown(0) TCGA-VQ-A8PP-01 16 28845447 28845447 C T ATXN2L Missense_Mutation p.P696L 0.23 tolerated(0.47) possibly_damaging(0.897) TCGA-VQ-A8PP-01 16 28846447 28846447 C T ATXN2L Silent p.I834I 0.32 TCGA-VQ-A8PP-01 16 2946699 2946699 C A FLYWCH2 Silent p.T83T 0.23 TCGA-VQ-A8PP-01 16 29884700 29884700 C T SEZ6L2 Silent p.T783T 0.20 TCGA-VQ-A8PP-01 16 30124781 30124781 A G GDPD3 Missense_Mutation p.Y7H 0.24 deleterious(0.02) possibly_damaging(0.702) TCGA-VQ-A8PP-01 16 30536120 30536120 G A ZNF768 Silent p.H447H 0.41 TCGA-VQ-A8PP-01 16 30733910 30733910 G - SRCAP Frame_Shift_Del p.Q1247Sfs*57 0.20 TCGA-VQ-A8PP-01 16 30734945 30734945 T A SRCAP Silent p.P1400P 0.30 TCGA-VQ-A8PP-01 16 31098131 31098131 C - RP11-196G11.1 3'Flank 0.14 TCGA-VQ-A8PP-01 16 31282387 31282387 A - ITGAM Frame_Shift_Del p.K182Sfs*8 0.26 TCGA-VQ-A8PP-01 16 314120 314120 T C ITFG3 Missense_Mutation p.S432P 0.18 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PP-01 16 31429442 31429442 C A ITGAD Missense_Mutation p.P849H 0.26 deleterious(0.03) possibly_damaging(0.885) TCGA-VQ-A8PP-01 16 3452111 3452111 A - ZNF174 Frame_Shift_Del p.N38Tfs*53 0.26 TCGA-VQ-A8PP-01 16 3724347 3724347 G T TRAP1 Missense_Mutation p.P346H 0.19 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PP-01 16 46617492 46617492 A G SHCBP1 Silent p.G543G 0.32 TCGA-VQ-A8PP-01 16 46617951 46617952 - T SHCBP1 Frame_Shift_Ins p.N505Kfs*13 0.22 TCGA-VQ-A8PP-01 16 48138148 48138148 A - ABCC12 Frame_Shift_Del p.F935Lfs*8 0.26 TCGA-VQ-A8PP-01 16 4897309 4897309 G A GLYR1 5'UTR 0.20 TCGA-VQ-A8PP-01 16 49670211 49670211 G A ZNF423 Missense_Mutation p.T951M 0.28 deleterious(0.04) probably_damaging(0.996) TCGA-VQ-A8PP-01 16 49671724 49671724 G A ZNF423 Silent p.L447L 0.25 TCGA-VQ-A8PP-01 16 52502449 52502449 G A TOX3 Missense_Mutation p.A42V 0.33 tolerated_low_confidence(0.05) probably_damaging(0.939) TCGA-VQ-A8PP-01 16 53358002 53358002 G - CHD9 Frame_Shift_Del p.R2616Dfs*28 0.20 TCGA-VQ-A8PP-01 16 53532355 53532355 T C AKTIP Missense_Mutation p.T66A 0.18 tolerated(0.28) benign(0.008) TCGA-VQ-A8PP-01 16 53636010 53636010 T C RPGRIP1L Missense_Mutation p.Y1309C 0.23 tolerated(0.39) benign(0.001) TCGA-VQ-A8PP-01 16 54966629 54966629 C A IRX5 Missense_Mutation p.L157I 0.25 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PP-01 16 57071170 57071170 C T NLRC5 Silent p.C925C 0.06 TCGA-VQ-A8PP-01 16 57600566 57600566 G - GPR114 Frame_Shift_Del p.G203Afs*62 0.26 TCGA-VQ-A8PP-01 16 57760055 57760055 G A CCDC135 Missense_Mutation p.A612T 0.24 tolerated(0.8) benign(0.001) TCGA-VQ-A8PP-01 16 58073833 58073833 C T MMP15 Silent p.R165R 0.25 TCGA-VQ-A8PP-01 16 58293812 58293812 A - CCDC113 Frame_Shift_Del p.M203Cfs*5 0.26 TCGA-VQ-A8PP-01 16 601525 601525 C T CAPN15 Nonsense_Mutation p.R736* 0.22 TCGA-VQ-A8PP-01 16 67237481 67237481 C T ELMO3 Missense_Mutation p.R702W 0.24 deleterious(0.02) benign(0.005) TCGA-VQ-A8PP-01 16 67263785 67263785 A G FHOD1 Missense_Mutation p.M1108T 0.22 deleterious(0) probably_damaging(0.979) TCGA-VQ-A8PP-01 16 67289822 67289822 C T SLC9A5 Silent p.S300S 0.37 TCGA-VQ-A8PP-01 16 67574519 67574519 G A FAM65A Missense_Mutation p.R258Q 0.34 deleterious(0) probably_damaging(0.97) TCGA-VQ-A8PP-01 16 67579427 67579427 C T FAM65A Silent p.T1080T 0.33 TCGA-VQ-A8PP-01 16 67688691 67688691 T C RLTPR Missense_Mutation p.L1198P 0.25 deleterious(0) probably_damaging(0.935) TCGA-VQ-A8PP-01 16 67862087 67862087 G - CENPT 3'UTR 0.10 TCGA-VQ-A8PP-01 16 68729771 68729771 C T CDH3 Missense_Mutation p.P742L 0.11 deleterious(0) probably_damaging(1) TCGA-VQ-A8PP-01 16 70503207 70503207 C T FUK Silent p.R312R 0.16 TCGA-VQ-A8PP-01 16 711635 711635 G A WDR90 Missense_Mutation p.A1238T 0.26 tolerated(0.61) benign(0.001) TCGA-VQ-A8PP-01 16 72827479 72827479 G A ZFHX3 Silent p.S3034S 0.07 TCGA-VQ-A8PP-01 16 74425304 74425304 G A NPIPB15 Missense_Mutation p.A220T 0.13 deleterious_low_confidence(0) possibly_damaging(0.908) TCGA-VQ-A8PP-01 16 75563186 75563186 C A CHST5 Missense_Mutation p.R366L 0.32 deleterious(0.01) benign(0.249) TCGA-VQ-A8PP-01 16 75668096 75668096 C A KARS Missense_Mutation p.R325I 0.27 deleterious(0) probably_damaging(1) TCGA-VQ-A8PP-01 16 76528864 76528864 G A CNTNAP4 Missense_Mutation p.G640E 0.20 deleterious(0.01) probably_damaging(0.971) TCGA-VQ-A8PP-01 16 81279174 81279174 C T BCMO1 Silent p.G53G 0.19 TCGA-VQ-A8PP-01 16 81969962 81969962 G A PLCG2 Missense_Mutation p.A1011T 0.33 deleterious(0) probably_damaging(0.948) TCGA-VQ-A8PP-01 16 84482172 84482172 T - ATP2C2 Frame_Shift_Del p.L513Wfs*4 0.18 TCGA-VQ-A8PP-01 16 85135924 85135924 A - FAM92B Frame_Shift_Del p.C183Vfs*4 0.27 TCGA-VQ-A8PP-01 16 88767781 88767781 C T RNF166 Silent p.P67P 0.31 TCGA-VQ-A8PP-01 16 88873057 88873057 G A CDT1 Missense_Mutation p.R366Q 0.21 tolerated(0.06) benign(0.025) TCGA-VQ-A8PP-01 16 88945789 88945789 G A CBFA2T3 Silent p.H517H 0.22 TCGA-VQ-A8PP-01 16 88951510 88951510 C T CBFA2T3 Missense_Mutation p.R354Q 0.39 tolerated(0.07) benign(0.372) TCGA-VQ-A8PP-01 16 88951595 88951595 G T CBFA2T3 Missense_Mutation p.R326S 0.33 tolerated(0.05) possibly_damaging(0.9) TCGA-VQ-A8PP-01 16 89167218 89167218 C T ACSF3 Silent p.S43S 0.21 TCGA-VQ-A8PP-01 16 89351929 89351929 C T ANKRD11 Missense_Mutation p.A341T 0.11 benign(0) TCGA-VQ-A8PP-01 16 89764615 89764615 G A SPATA2L Silent p.S134S 0.30 TCGA-VQ-A8PP-01 16 9923436 9923436 C T GRIN2A Silent p.V617V 0.19 TCGA-VQ-A8PP-01 17 12898122 12898122 T C ELAC2 Missense_Mutation p.Y663C 0.31 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PP-01 17 1584230 1584230 G T PRPF8 Missense_Mutation p.L329I 0.28 tolerated(0.68) benign(0.003) TCGA-VQ-A8PP-01 17 16022737 16022738 - T NCOR1 Frame_Shift_Ins p.G639Rfs*8 0.28 TCGA-VQ-A8PP-01 17 16320951 16320951 C T TRPV2 5'UTR 0.20 TCGA-VQ-A8PP-01 17 1640988 1640988 A G WDR81 3'UTR 0.26 TCGA-VQ-A8PP-01 17 16526705 16526706 - T ZNF624 Frame_Shift_Ins p.P499Tfs*3 0.22 TCGA-VQ-A8PP-01 17 1686339 1686339 A C SMYD4 Missense_Mutation p.F751V 0.30 deleterious(0.04) benign(0.101) TCGA-VQ-A8PP-01 17 1747938 1747938 G A RPA1 Missense_Mutation p.C77Y 0.08 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8PP-01 17 18022986 18022986 A G MYO15A Missense_Mutation p.H291R 0.23 benign(0.227) TCGA-VQ-A8PP-01 17 18140024 18140024 G A LLGL1 Missense_Mutation p.A486T 0.23 tolerated(0.47) benign(0.001) TCGA-VQ-A8PP-01 17 18144014 18144014 G A LLGL1 Missense_Mutation p.V777M 0.34 tolerated(0.24) possibly_damaging(0.843) TCGA-VQ-A8PP-01 17 19284297 19284297 C T MAPK7 Missense_Mutation p.R259C 0.28 deleterious(0) unknown(0) TCGA-VQ-A8PP-01 17 19619877 19619877 G A SLC47A2 5'UTR 0.56 TCGA-VQ-A8PP-01 17 21215535 21215536 - C MAP2K3 Frame_Shift_Ins p.Q288Pfs*88 0.19 TCGA-VQ-A8PP-01 17 21731268 21731268 G A UBBP4 Intron 0.13 TCGA-VQ-A8PP-01 17 2278813 2278813 C - SGSM2 Frame_Shift_Del p.P711Rfs*58 0.13 TCGA-VQ-A8PP-01 17 26696034 26696034 G A VTN Missense_Mutation p.R229C 0.09 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PP-01 17 28651944 28651944 G T TMIGD1 Missense_Mutation p.S177Y 0.28 tolerated(1) benign(0.011) TCGA-VQ-A8PP-01 17 29061840 29061840 A G CTD-2349P21.5 3'Flank 0.13 TCGA-VQ-A8PP-01 17 29112986 29112986 A G CRLF3 Silent p.D341D 0.22 TCGA-VQ-A8PP-01 17 29113025 29113025 G A CRLF3 Silent p.D328D 0.27 TCGA-VQ-A8PP-01 17 29645712 29645712 A G EVI2A Missense_Mutation p.V130A 0.29 tolerated(0.71) benign(0.003) TCGA-VQ-A8PP-01 17 30685637 30685637 G A ZNF207 Missense_Mutation p.R95Q 0.28 tolerated(0.06) benign(0.018) TCGA-VQ-A8PP-01 17 30791097 30791097 G A PSMD11 Missense_Mutation p.A117T 0.25 tolerated(0.08) possibly_damaging(0.703) TCGA-VQ-A8PP-01 17 31107724 31107724 A G MYO1D Silent p.Y58Y 0.23 TCGA-VQ-A8PP-01 17 32953980 32953980 G A TMEM132E Missense_Mutation p.R211Q 0.24 tolerated(0.11) benign(0.38) TCGA-VQ-A8PP-01 17 33325694 33325694 C T LIG3 Silent p.A687A 0.17 TCGA-VQ-A8PP-01 17 33520536 33520536 A G SLC35G3 Missense_Mutation p.L264S 0.28 deleterious(0.02) probably_damaging(1) TCGA-VQ-A8PP-01 17 33520618 33520618 C A SLC35G3 Missense_Mutation p.G237C 0.37 tolerated(0.08) probably_damaging(0.963) TCGA-VQ-A8PP-01 17 33591535 33591535 C - SLFN5 Frame_Shift_Del p.L493Wfs*5 0.24 TCGA-VQ-A8PP-01 17 33902763 33902763 G A PEX12 3'UTR 0.29 TCGA-VQ-A8PP-01 17 34863332 34863332 C A MYO19 Missense_Mutation p.G458V 0.22 deleterious(0) probably_damaging(0.973) TCGA-VQ-A8PP-01 17 34937896 34937896 A - GGNBP2 Frame_Shift_Del p.N383Ifs*19 0.28 TCGA-VQ-A8PP-01 17 35310412 35310412 T C AATF Silent p.S170S 0.30 TCGA-VQ-A8PP-01 17 35468574 35468574 A T ACACA Missense_Mutation p.S2153T 0.18 deleterious(0) benign(0.176) TCGA-VQ-A8PP-01 17 35620654 35620654 A G ACACA Silent p.H421H 0.07 TCGA-VQ-A8PP-01 17 36868998 36868998 C - MLLT6 Frame_Shift_Del p.S261Afs*48 0.19 TCGA-VQ-A8PP-01 17 37785805 37785805 C - PPP1R1B Frame_Shift_Del p.H54Tfs*26 0.22 TCGA-VQ-A8PP-01 17 38785000 38785000 A - SMARCE1 3'UTR 0.18 TCGA-VQ-A8PP-01 17 39092731 39092731 C T KRT23 Missense_Mutation p.R42H 0.37 tolerated(0.54) benign(0.005) TCGA-VQ-A8PP-01 17 39521790 39521790 G A KRT33B Missense_Mutation p.R202C 0.31 deleterious(0.02) benign(0.431) TCGA-VQ-A8PP-01 17 39923758 39923758 T G JUP Missense_Mutation p.K261T 0.25 deleterious(0) probably_damaging(0.99) TCGA-VQ-A8PP-01 17 40001465 40001465 G T KLHL10 Missense_Mutation p.V258F 0.21 deleterious(0.01) benign(0.017) TCGA-VQ-A8PP-01 17 40318393 40318393 C - KCNH4 Frame_Shift_Del p.D588Mfs*31 0.35 TCGA-VQ-A8PP-01 17 40647132 40647132 T C ATP6V0A1 Silent p.N472N 0.33 TCGA-VQ-A8PP-01 17 40870637 40870637 T C EZH1 Splice_Site p.X256_splice 0.17 TCGA-VQ-A8PP-01 17 40934919 40934919 C T WNK4 Silent p.T254T 0.19 TCGA-VQ-A8PP-01 17 40940393 40940393 C T WNK4 Missense_Mutation p.R670C 0.38 deleterious(0) unknown(0) TCGA-VQ-A8PP-01 17 41004548 41004548 G A AOC3 Silent p.T396T 0.28 TCGA-VQ-A8PP-01 17 41020331 41020331 C A AOC4P RNA 0.55 TCGA-VQ-A8PP-01 17 41108275 41108275 G A AARSD1 Silent p.G203G 0.38 TCGA-VQ-A8PP-01 17 41959740 41959740 C T MPP2 Missense_Mutation p.R198H 0.31 tolerated(0.11) probably_damaging(0.914) TCGA-VQ-A8PP-01 17 42330498 42330498 C A SLC4A1 Missense_Mutation p.A767S 0.22 tolerated(0.41) benign(0.044) TCGA-VQ-A8PP-01 17 42635812 42635812 G A FZD2 Silent p.S252S 0.23 TCGA-VQ-A8PP-01 17 43226999 43226999 C T HEXIM1 Silent p.L148L 0.42 TCGA-VQ-A8PP-01 17 4619810 4619810 C - ARRB2 Frame_Shift_Del p.P90Rfs*17 0.24 TCGA-VQ-A8PP-01 17 46865282 46865282 G A TTLL6 Nonsense_Mutation p.R494* 0.31 TCGA-VQ-A8PP-01 17 47237989 47237989 A G B4GALNT2 Missense_Mutation p.Y311C 0.30 deleterious(0) probably_damaging(0.927) TCGA-VQ-A8PP-01 17 47921473 47921473 G A TAC4 Missense_Mutation p.T57M 0.33 deleterious(0.02) benign(0.023) TCGA-VQ-A8PP-01 17 48433967 48433968 CC - XYLT2 Frame_Shift_Del p.P528Rfs*17 0.31 TCGA-VQ-A8PP-01 17 48562144 48562145 CT - RSAD1 Frame_Shift_Del p.L420Afs*38 0.16 TCGA-VQ-A8PP-01 17 4872998 4872998 T C CAMTA2 Splice_Site p.X1087_splice 0.30 TCGA-VQ-A8PP-01 17 48745134 48745134 G T ABCC3 Intron 0.22 TCGA-VQ-A8PP-01 17 4906952 4906952 G A KIF1C Missense_Mutation p.D256N 0.30 tolerated(0.19) benign(0.062) TCGA-VQ-A8PP-01 17 4926847 4926847 A G KIF1C Missense_Mutation p.S905G 0.22 tolerated_low_confidence(0.42) benign(0) TCGA-VQ-A8PP-01 17 5238641 5238641 T C RABEP1 Splice_Site p.X176_splice 0.21 TCGA-VQ-A8PP-01 17 53345037 53345037 G A HLF Intron 0.64 TCGA-VQ-A8PP-01 17 54912232 54912232 A G DGKE Missense_Mutation p.T26A 0.32 tolerated(0.06) probably_damaging(0.996) TCGA-VQ-A8PP-01 17 55182992 55182992 A - AKAP1 Frame_Shift_Del p.E56Dfs*12 0.21 TCGA-VQ-A8PP-01 17 55962808 55962808 G A CUEDC1 Missense_Mutation p.R40C 0.36 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PP-01 17 56272381 56272381 C T EPX Silent p.D217D 0.17 TCGA-VQ-A8PP-01 17 56356911 56356911 C T MPO Missense_Mutation p.R174H 0.18 deleterious(0.01) probably_damaging(0.909) TCGA-VQ-A8PP-01 17 56435161 56435161 C - RNF43 Frame_Shift_Del p.G659Vfs*41 0.39 TCGA-VQ-A8PP-01 17 57654725 57654725 A G DHX40 Missense_Mutation p.R358G 0.23 tolerated(0.14) possibly_damaging(0.651) TCGA-VQ-A8PP-01 17 59934454 59934454 G T BRIP1 Missense_Mutation p.P115H 0.17 tolerated(0.07) benign(0.078) TCGA-VQ-A8PP-01 17 61657248 61657248 C T DCAF7 Intron 0.32 TCGA-VQ-A8PP-01 17 61842179 61842179 T C CCDC47 Missense_Mutation p.D98G 0.19 deleterious(0.01) possibly_damaging(0.608) TCGA-VQ-A8PP-01 17 61994697 61994697 C T GH1 Missense_Mutation p.R209H 0.26 deleterious(0.05) benign(0.029) TCGA-VQ-A8PP-01 17 62122833 62122833 C T ERN1 Missense_Mutation p.D847N 0.19 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PP-01 17 63156704 63156704 C T RGS9 Silent p.Y121Y 0.15 TCGA-VQ-A8PP-01 17 651044 651044 G A GEMIN4 Missense_Mutation p.P80L 0.23 deleterious(0.04) probably_damaging(0.965) TCGA-VQ-A8PP-01 17 65907961 65907961 A T BPTF Missense_Mutation p.T1321S 0.26 benign(0.025) TCGA-VQ-A8PP-01 17 67297326 67297326 A G ABCA5 Silent p.S407S 0.07 TCGA-VQ-A8PP-01 17 6945394 6945394 G A SLC16A11 Silent p.G369G 0.25 TCGA-VQ-A8PP-01 17 7134085 7134085 C T DVL2 Missense_Mutation p.A76T 0.22 tolerated(0.05) probably_damaging(0.986) TCGA-VQ-A8PP-01 17 71357964 71357964 C T SDK2 Missense_Mutation p.V1776M 0.27 deleterious(0) probably_damaging(1) TCGA-VQ-A8PP-01 17 71395411 71395412 - G SDK2 Frame_Shift_Ins p.T997Hfs*54 0.26 TCGA-VQ-A8PP-01 17 7220634 7220634 G A NEURL4 Silent p.F1458F 0.36 TCGA-VQ-A8PP-01 17 72368570 72368570 C T GPR142 Missense_Mutation p.T407M 0.30 deleterious(0) probably_damaging(1) TCGA-VQ-A8PP-01 17 72578395 72578395 T C CD300LD Silent p.T145T 0.27 TCGA-VQ-A8PP-01 17 72916020 72916020 T A USH1G Missense_Mutation p.D304V 0.29 tolerated(0.23) possibly_damaging(0.856) TCGA-VQ-A8PP-01 17 7365272 7365272 C T ZBTB4 Missense_Mutation p.G1010D 0.27 probably_damaging(0.992) TCGA-VQ-A8PP-01 17 73746892 73746892 G T ITGB4 Missense_Mutation p.Q1202H 0.27 deleterious(0.03) benign(0.005) TCGA-VQ-A8PP-01 17 74470812 74470812 C T RHBDF2 Silent p.S463S 0.23 TCGA-VQ-A8PP-01 17 74740478 74740478 C T MFSD11 Missense_Mutation p.R191W 0.23 deleterious(0) probably_damaging(0.981) TCGA-VQ-A8PP-01 17 7478566 7478566 T G EIF4A1 Missense_Mutation p.L112W 0.30 deleterious(0) probably_damaging(1) TCGA-VQ-A8PP-01 17 7483201 7483201 G A CD68 Silent p.T41T 0.11 TCGA-VQ-A8PP-01 17 7579397 7579397 A T TP53 Missense_Mutation p.V97D 0.23 deleterious(0) probably_damaging(1) TCGA-VQ-A8PP-01 17 76100624 76100624 C T TNRC6C Missense_Mutation p.R1627C 0.25 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8PP-01 17 76471894 76471894 A G DNAH17 Missense_Mutation p.F2712L 0.26 benign(0.013) TCGA-VQ-A8PP-01 17 76802268 76802268 A G USP36 Missense_Mutation p.V729A 0.26 tolerated(1) benign(0.004) TCGA-VQ-A8PP-01 17 77081357 77081357 C - ENGASE Frame_Shift_Del p.T547Pfs*14 0.39 TCGA-VQ-A8PP-01 17 77808119 77808119 C - CBX4 Frame_Shift_Del p.G441Afs*25 0.31 TCGA-VQ-A8PP-01 17 7806653 7806653 C T CHD3 Missense_Mutation p.R1246C 0.28 possibly_damaging(0.689) TCGA-VQ-A8PP-01 17 78319509 78319509 C T RNF213 Silent p.D2458D 0.34 TCGA-VQ-A8PP-01 17 78338327 78338327 A G RNF213 Missense_Mutation p.T3949A 0.24 possibly_damaging(0.757) TCGA-VQ-A8PP-01 17 7976198 7976198 C T ALOX12B Missense_Mutation p.R666H 0.21 deleterious(0) possibly_damaging(0.867) TCGA-VQ-A8PP-01 17 79914942 79914942 C - NOTUM Frame_Shift_Del p.G235Afs*6 0.17 TCGA-VQ-A8PP-01 17 80042453 80042453 G A FASN Silent p.Y1568Y 0.25 TCGA-VQ-A8PP-01 17 8011808 8011808 C T ALOXE3 Silent p.A686A 0.24 TCGA-VQ-A8PP-01 17 80196844 80196844 A G SLC16A3 Missense_Mutation p.S464G 0.38 tolerated(0.1) benign(0.405) TCGA-VQ-A8PP-01 17 80211007 80211007 G A CSNK1D Silent p.F150F 0.30 TCGA-VQ-A8PP-01 17 8047161 8047161 C T PER1 Missense_Mutation p.R832Q 0.27 tolerated(0.32) probably_damaging(0.922) TCGA-VQ-A8PP-01 17 80544048 80544048 G T FOXK2 Missense_Mutation p.Q516H 0.19 deleterious(0.05) benign(0.078) TCGA-VQ-A8PP-01 17 8077689 8077689 G - TMEM107 Intron 0.21 TCGA-VQ-A8PP-01 17 81042793 81042793 G A METRNL Intron 0.29 TCGA-VQ-A8PP-01 17 8215807 8215807 G A ARHGEF15 Silent p.V150V 0.23 TCGA-VQ-A8PP-01 17 8926355 8926355 C T NTN1 Missense_Mutation p.T222M 0.38 deleterious(0.03) probably_damaging(1) TCGA-VQ-A8PP-01 17 9536234 9536234 G A WDR16 Missense_Mutation p.A402T 0.20 tolerated(0.67) benign(0.001) TCGA-VQ-A8PP-01 18 166813 166813 A - USP14 Frame_Shift_Del p.N65Mfs*3 0.24 TCGA-VQ-A8PP-01 18 19418429 19418429 G A MIB1 Missense_Mutation p.V645I 0.31 tolerated(0.41) possibly_damaging(0.876) TCGA-VQ-A8PP-01 18 21508172 21508172 G T LAMA3 Nonsense_Mutation p.G2755* 0.25 TCGA-VQ-A8PP-01 18 22805059 22805059 G A ZNF521 Silent p.S941S 0.31 TCGA-VQ-A8PP-01 18 28734835 28734835 C T DSC1 Missense_Mutation p.V177M 0.30 deleterious(0) probably_damaging(0.985) TCGA-VQ-A8PP-01 18 30092662 30092662 C T WBP11P1 RNA 0.37 TCGA-VQ-A8PP-01 18 30321980 30321980 A T KLHL14 Missense_Mutation p.V327D 0.36 deleterious(0) possibly_damaging(0.5) TCGA-VQ-A8PP-01 18 30350317 30350317 C - KLHL14 Frame_Shift_Del p.A80Pfs*37 0.24 TCGA-VQ-A8PP-01 18 3215146 3215146 C T MYOM1 Missense_Mutation p.V26M 0.31 tolerated_low_confidence(1) benign(0.016) TCGA-VQ-A8PP-01 18 34205516 34205516 C - FHOD3 Frame_Shift_Del p.S336Vfs*138 0.24 TCGA-VQ-A8PP-01 18 44470593 44470593 T - PIAS2 Frame_Shift_Del p.N150Ifs*17 0.24 TCGA-VQ-A8PP-01 18 44555262 44555262 C T TCEB3C Missense_Mutation p.A318T 0.07 deleterious(0.02) probably_damaging(0.985) TCGA-VQ-A8PP-01 18 45566671 45566671 G A ZBTB7C Silent p.L270L 0.26 TCGA-VQ-A8PP-01 18 46385855 46385855 C T CTIF Silent p.H576H 0.23 TCGA-VQ-A8PP-01 18 47800597 47800597 G A MBD1 Missense_Mutation p.R369C 0.30 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8PP-01 18 55103299 55103299 C T ONECUT2 Silent p.G117G 0.15 TCGA-VQ-A8PP-01 18 55328448 55328448 G A ATP8B1 Silent p.L889L 0.26 TCGA-VQ-A8PP-01 18 56009023 56009023 G A NEDD4L Silent p.P457P 0.47 TCGA-VQ-A8PP-01 18 56586485 56586485 C T ZNF532 Silent p.D322D 0.21 TCGA-VQ-A8PP-01 18 59170330 59170330 A G CDH20 Missense_Mutation p.D269G 0.23 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PP-01 18 59888476 59888477 - A KIAA1468 Frame_Shift_Ins p.N240Kfs*7 0.36 TCGA-VQ-A8PP-01 18 60029011 60029011 G A TNFRSF11A Missense_Mutation p.G239R 0.31 deleterious(0) possibly_damaging(0.666) TCGA-VQ-A8PP-01 18 60639886 60639887 - A PHLPP1 Frame_Shift_Ins p.T1236Nfs*38 0.15 TCGA-VQ-A8PP-01 18 61078806 61078806 C T VPS4B Silent p.A11A 0.22 TCGA-VQ-A8PP-01 18 65178267 65178267 T C DSEL Silent p.L1203L 0.22 TCGA-VQ-A8PP-01 18 72998422 72998422 C T TSHZ1 Missense_Mutation p.R309W 0.35 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PP-01 18 8798172 8798172 C T SOGA2 Silent p.H773H 0.17 TCGA-VQ-A8PP-01 19 1005255 1005255 G A GRIN3B Silent p.L585L 0.09 TCGA-VQ-A8PP-01 19 10940882 10940882 C - DNM2 Frame_Shift_Del p.L793* 0.27 TCGA-VQ-A8PP-01 19 11326540 11326540 G A DOCK6 Missense_Mutation p.R1320W 0.30 deleterious(0.01) benign(0.003) TCGA-VQ-A8PP-01 19 11354286 11354286 G A DOCK6 Missense_Mutation p.A402V 0.36 tolerated(0.27) benign(0.007) TCGA-VQ-A8PP-01 19 11488473 11488473 A - EPOR 3'UTR 0.40 TCGA-VQ-A8PP-01 19 11978322 11978322 G T ZNF439 Missense_Mutation p.K146N 0.31 deleterious(0.01) possibly_damaging(0.507) TCGA-VQ-A8PP-01 19 12691717 12691717 T G ZNF490 Missense_Mutation p.E391A 0.38 deleterious(0.02) possibly_damaging(0.708) TCGA-VQ-A8PP-01 19 13476250 13476250 G A CACNA1A Missense_Mutation p.A222V 0.14 possibly_damaging(0.873) TCGA-VQ-A8PP-01 19 14269931 14269931 G A LPHN1 Missense_Mutation p.A712V 0.30 deleterious(0.02) probably_damaging(0.964) TCGA-VQ-A8PP-01 19 14991856 14991856 A - OR7A17 Frame_Shift_Del p.F104Lfs*7 0.11 TCGA-VQ-A8PP-01 19 15484003 15484003 G A AKAP8 Nonsense_Mutation p.R174* 0.11 TCGA-VQ-A8PP-01 19 15484019 15484019 C T AKAP8 Silent p.G168G 0.11 TCGA-VQ-A8PP-01 19 15562614 15562614 T C RASAL3 Missense_Mutation p.T1010A 0.26 tolerated_low_confidence(0.07) benign(0.068) TCGA-VQ-A8PP-01 19 1578328 1578328 C T MBD3 3'UTR 0.31 TCGA-VQ-A8PP-01 19 16790801 16790801 T C TMEM38A Missense_Mutation p.V44A 0.24 tolerated(0.22) possibly_damaging(0.876) TCGA-VQ-A8PP-01 19 16974477 16974477 T C SIN3B Intron 0.24 TCGA-VQ-A8PP-01 19 17412138 17412138 G A ABHD8 Silent p.G96G 0.24 TCGA-VQ-A8PP-01 19 18271752 18271752 C T PIK3R2 Missense_Mutation p.R147C 0.24 deleterious(0.02) possibly_damaging(0.668) TCGA-VQ-A8PP-01 19 18557611 18557611 G T ELL Silent p.T493T 0.39 TCGA-VQ-A8PP-01 19 18901375 18901375 C T COMP Silent p.A71A 0.27 TCGA-VQ-A8PP-01 19 1954137 1954137 T C CSNK1G2 Intron 0.26 TCGA-VQ-A8PP-01 19 19576310 19576310 G A GATAD2A Silent p.P52P 0.20 TCGA-VQ-A8PP-01 19 19760378 19760378 A G ATP13A1 Missense_Mutation p.V877A 0.30 deleterious(0.01) possibly_damaging(0.885) TCGA-VQ-A8PP-01 19 1978339 1978339 A G CSNK1G2 Missense_Mutation p.K75E 0.36 deleterious(0) possibly_damaging(0.616) TCGA-VQ-A8PP-01 19 19822282 19822282 C T ZNF14 Missense_Mutation p.R603Q 0.25 tolerated(0.88) benign(0.02) TCGA-VQ-A8PP-01 19 20735292 20735292 G A ZNF737 Missense_Mutation p.A72V 0.27 tolerated(0.07) possibly_damaging(0.824) TCGA-VQ-A8PP-01 19 2078279 2078279 C - MOB3A Frame_Shift_Del p.G94Afs*29 0.14 TCGA-VQ-A8PP-01 19 21132760 21132760 A C ZNF85 Missense_Mutation p.K480N 0.31 deleterious(0.01) possibly_damaging(0.689) TCGA-VQ-A8PP-01 19 22575652 22575652 T C ZNF98 Missense_Mutation p.M129V 0.33 tolerated(1) benign(0) TCGA-VQ-A8PP-01 19 2290221 2290221 G A LINGO3 Missense_Mutation p.R519C 0.20 deleterious(0.04) possibly_damaging(0.608) TCGA-VQ-A8PP-01 19 22939522 22939522 A C ZNF99 3'Flank 0.27 TCGA-VQ-A8PP-01 19 2351584 2351584 G A LLfos-48D6.1 3'Flank 0.20 TCGA-VQ-A8PP-01 19 31768529 31768529 C T TSHZ3 Missense_Mutation p.A724T 0.32 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PP-01 19 325649 325649 C T MIER2 Missense_Mutation p.R214Q 0.15 tolerated(0.09) probably_damaging(0.912) TCGA-VQ-A8PP-01 19 33077794 33077794 A - PDCD5 Frame_Shift_Del p.V99* 0.22 TCGA-VQ-A8PP-01 19 33135265 33135265 C T ANKRD27 Missense_Mutation p.R164Q 0.33 tolerated(0.13) benign(0.238) TCGA-VQ-A8PP-01 19 33167235 33167235 C T RGS9BP Silent p.H22H 0.16 TCGA-VQ-A8PP-01 19 33370077 33370077 G - CEP89 Frame_Shift_Del p.T782Pfs*48 0.23 TCGA-VQ-A8PP-01 19 33792455 33792455 C T CEBPA Missense_Mutation p.R289H 0.21 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PP-01 19 3551029 3551029 C T MFSD12 Silent p.P154P 0.18 TCGA-VQ-A8PP-01 19 35757845 35757845 C - LSR Frame_Shift_Del p.S424Vfs*8 0.19 TCGA-VQ-A8PP-01 19 3612009 3612009 T C CACTIN Missense_Mutation p.Y730C 0.36 tolerated(0.08) benign(0.205) TCGA-VQ-A8PP-01 19 36213584 36213584 C A KMT2B Missense_Mutation p.L896I 0.33 possibly_damaging(0.899) TCGA-VQ-A8PP-01 19 36213931 36213931 G A KMT2B Silent p.P919P 0.50 TCGA-VQ-A8PP-01 19 36435460 36435460 G A LRFN3 Missense_Mutation p.A476T 0.27 deleterious(0.02) possibly_damaging(0.643) TCGA-VQ-A8PP-01 19 36435831 36435831 C T LRFN3 Silent p.P599P 0.42 TCGA-VQ-A8PP-01 19 36884292 36884292 T G ZFP82 Missense_Mutation p.K317T 0.22 deleterious(0.01) benign(0.295) TCGA-VQ-A8PP-01 19 36940787 36940787 T C ZNF566 Missense_Mutation p.S118G 0.25 tolerated(0.34) benign(0.002) TCGA-VQ-A8PP-01 19 37038419 37038419 A - ZNF529 Frame_Shift_Del p.F347Lfs*63 0.21 TCGA-VQ-A8PP-01 19 37488176 37488176 T C ZNF568 Missense_Mutation p.V464A 0.38 deleterious(0.01) probably_damaging(0.923) TCGA-VQ-A8PP-01 19 3834843 3834843 G A ZFR2 Silent p.S64S 0.25 TCGA-VQ-A8PP-01 19 38911790 38911790 C T RASGRP4 Missense_Mutation p.A87T 0.15 tolerated(0.92) benign(0.011) TCGA-VQ-A8PP-01 19 39664537 39664537 G A PAK4 Missense_Mutation p.E329K 0.44 deleterious(0.01) benign(0.223) TCGA-VQ-A8PP-01 19 40392654 40392654 C T FCGBP Missense_Mutation p.G2617D 0.27 benign(0.02) TCGA-VQ-A8PP-01 19 40978628 40978628 C T SPTBN4 Missense_Mutation p.R34W 0.42 deleterious(0) possibly_damaging(0.703) TCGA-VQ-A8PP-01 19 41596097 41596097 G A CYP2A13 Silent p.T163T 0.30 TCGA-VQ-A8PP-01 19 41822622 41822622 G A CCDC97 Missense_Mutation p.R127H 0.19 deleterious(0.04) probably_damaging(0.964) TCGA-VQ-A8PP-01 19 42260686 42260686 A G CEACAM6 Silent p.G81G 0.26 TCGA-VQ-A8PP-01 19 42312888 42312888 C T CEACAM3 Silent p.A154A 0.24 TCGA-VQ-A8PP-01 19 42914723 42914723 C T LIPE Silent p.A385A 0.20 TCGA-VQ-A8PP-01 19 43523150 43523150 C T PSG11 Missense_Mutation p.A161T 0.28 tolerated(0.15) benign(0.082) TCGA-VQ-A8PP-01 19 44129366 44129366 A C CADM4 Silent p.S264S 0.32 TCGA-VQ-A8PP-01 19 44681004 44681004 C T ZNF226 Missense_Mutation p.P530L 0.17 deleterious(0) probably_damaging(1) TCGA-VQ-A8PP-01 19 44777831 44777831 A C ZNF233 Missense_Mutation p.N340H 0.17 deleterious(0) benign(0.135) TCGA-VQ-A8PP-01 19 45976199 45976199 G A FOSB Missense_Mutation p.G316S 0.25 tolerated(0.36) benign(0.004) TCGA-VQ-A8PP-01 19 46177395 46177395 G A GIPR Missense_Mutation p.A150T 0.31 tolerated(0.12) benign(0.079) TCGA-VQ-A8PP-01 19 46190839 46190839 A G SNRPD2 Missense_Mutation p.L110P 0.21 deleterious(0.04) benign(0.393) TCGA-VQ-A8PP-01 19 46198967 46198967 C A QPCTL Silent p.A208A 0.31 TCGA-VQ-A8PP-01 19 46268691 46268691 C - SIX5 3'UTR 0.21 TCGA-VQ-A8PP-01 19 46417555 46417555 C T NANOS2 Missense_Mutation p.G133R 0.23 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PP-01 19 47575208 47575208 A G ZC3H4 Missense_Mutation p.M658T 0.20 unknown(0) TCGA-VQ-A8PP-01 19 48244206 48244206 C T EHD2 Silent p.D383D 0.16 TCGA-VQ-A8PP-01 19 48608590 48608590 C A PLA2G4C Missense_Mutation p.E50D 0.19 tolerated(0.05) benign(0.28) TCGA-VQ-A8PP-01 19 48956330 48956330 G A GRWD1 3'UTR 0.42 TCGA-VQ-A8PP-01 19 49132596 49132596 T A SPHK2 Missense_Mutation p.S511T 0.35 tolerated(0.15) benign(0.352) TCGA-VQ-A8PP-01 19 49481378 49481378 C A GYS1 Missense_Mutation p.R402S 0.17 tolerated(0.07) benign(0.138) TCGA-VQ-A8PP-01 19 49507641 49507641 C T RUVBL2 Silent p.G77G 0.34 TCGA-VQ-A8PP-01 19 49965948 49965948 G - ALDH16A1 Frame_Shift_Del p.A347Lfs*155 0.27 TCGA-VQ-A8PP-01 19 50059885 50059885 T C NOSIP Missense_Mutation p.T216A 0.25 tolerated(0.91) benign(0.004) TCGA-VQ-A8PP-01 19 50062175 50062177 CTT - NOSIP In_Frame_Del p.K79del 0.35 TCGA-VQ-A8PP-01 19 5032932 5032932 C A KDM4B Missense_Mutation p.P11T 0.29 possibly_damaging(0.464) TCGA-VQ-A8PP-01 19 50549311 50549311 C T ZNF473 Silent p.H537H 0.29 TCGA-VQ-A8PP-01 19 51325119 51325119 G T KLK1 Missense_Mutation p.P19T 0.29 deleterious(0.03) possibly_damaging(0.468) TCGA-VQ-A8PP-01 19 51330227 51330227 G T KLK15 Missense_Mutation p.R130S 0.17 tolerated(0.23) possibly_damaging(0.743) TCGA-VQ-A8PP-01 19 5144151 5144151 G - KDM4B Frame_Shift_Del p.G910Vfs*7 0.20 TCGA-VQ-A8PP-01 19 51560014 51560014 G - KLK13 Frame_Shift_Del p.L222Wfs*52 0.21 TCGA-VQ-A8PP-01 19 52033179 52033179 G A SIGLEC6 Missense_Mutation p.R271W 0.33 deleterious(0) probably_damaging(0.987) TCGA-VQ-A8PP-01 19 5243997 5243997 C A PTPRS Missense_Mutation p.E495D 0.17 tolerated(0.51) probably_damaging(0.973) TCGA-VQ-A8PP-01 19 52803656 52803656 C T ZNF480 5'UTR 0.15 TCGA-VQ-A8PP-01 19 53116878 53116878 C A ZNF83 Nonsense_Mutation p.E314* 0.24 TCGA-VQ-A8PP-01 19 53572548 53572548 T C ZNF160 Silent p.A413A 0.27 TCGA-VQ-A8PP-01 19 54466569 54466569 C T CACNG8 Missense_Mutation p.T58M 0.26 deleterious(0) possibly_damaging(0.796) TCGA-VQ-A8PP-01 19 54496175 54496175 G A CACNG6 Missense_Mutation p.R15Q 0.57 tolerated(0.28) probably_damaging(0.996) TCGA-VQ-A8PP-01 19 54744862 54744862 C T LILRA6 Missense_Mutation p.R267H 0.12 tolerated(0.51) benign(0.104) TCGA-VQ-A8PP-01 19 55148385 55148385 C - LILRB1 3'UTR 0.31 TCGA-VQ-A8PP-01 19 55558836 55558836 C T RDH13 Missense_Mutation p.A227T 0.15 deleterious(0.04) benign(0.005) TCGA-VQ-A8PP-01 19 55598735 55598735 C T EPS8L1 Missense_Mutation p.R673W 0.35 deleterious(0) probably_damaging(0.987) TCGA-VQ-A8PP-01 19 55693150 55693150 G A PTPRH Missense_Mutation p.A1107V 0.31 possibly_damaging(0.622) TCGA-VQ-A8PP-01 19 55889011 55889011 A G TMEM190 Missense_Mutation p.I49V 0.33 tolerated(0.16) benign(0.068) TCGA-VQ-A8PP-01 19 56220348 56220349 - T NLRP9 Frame_Shift_Ins p.I969Nfs*13 0.20 TCGA-VQ-A8PP-01 19 56407486 56407486 C A NLRP13 Splice_Site p.X986_splice 0.08 TCGA-VQ-A8PP-01 19 56733045 56733045 C T ZSCAN5A Missense_Mutation p.G464R 0.20 deleterious(0.03) probably_damaging(1) TCGA-VQ-A8PP-01 19 56735038 56735038 G A ZSCAN5A Nonsense_Mutation p.Q184* 0.32 TCGA-VQ-A8PP-01 19 57646264 57646264 T - ZIM3 3'UTR 0.15 TCGA-VQ-A8PP-01 19 57908513 57908513 T C ZNF548 Missense_Mutation p.L50P 0.29 deleterious(0) possibly_damaging(0.839) TCGA-VQ-A8PP-01 19 58083762 58083763 - A ZNF416 Frame_Shift_Ins p.R504* 0.26 TCGA-VQ-A8PP-01 19 58868716 58868716 G T ZNF497 Missense_Mutation p.R96S 0.45 tolerated(1) benign(0.004) TCGA-VQ-A8PP-01 19 58945944 58945944 T C ZNF132 Missense_Mutation p.I289M 0.25 tolerated(0.1) benign(0.295) TCGA-VQ-A8PP-01 19 58946275 58946275 A C ZNF132 Missense_Mutation p.L179R 0.32 deleterious(0.03) benign(0.038) TCGA-VQ-A8PP-01 19 7527067 7527067 G A ARHGEF18 Missense_Mutation p.A640T 0.27 tolerated(0.27) benign(0.014) TCGA-VQ-A8PP-01 19 7670289 7670289 C T CAMSAP3 Missense_Mutation p.A109V 0.19 tolerated(0.09) benign(0.284) TCGA-VQ-A8PP-01 19 7975965 7975965 T C MAP2K7 Missense_Mutation p.L259P 0.28 deleterious(0) probably_damaging(1) TCGA-VQ-A8PP-01 19 8551068 8551068 G A HNRNPM Missense_Mutation p.A586T 0.18 deleterious(0.04) benign(0.391) TCGA-VQ-A8PP-01 19 8662129 8662129 T C ADAMTS10 Missense_Mutation p.T295A 0.36 deleterious(0.02) possibly_damaging(0.876) TCGA-VQ-A8PP-01 19 8922409 8922409 T C ZNF558 Missense_Mutation p.S253G 0.24 tolerated(0.33) benign(0.237) TCGA-VQ-A8PP-01 19 9071711 9071711 A T MUC16 Silent p.P5245P 0.18 TCGA-VQ-A8PP-01 19 9085084 9085084 G A MUC16 Missense_Mutation p.A2244V 0.25 unknown(0) TCGA-VQ-A8PP-01 19 9090389 9090389 A G MUC16 Missense_Mutation p.S476P 0.29 unknown(0) TCGA-VQ-A8PP-01 19 9965151 9965151 C T OLFM2 Missense_Mutation p.R359Q 0.23 tolerated(1) benign(0.007) TCGA-VQ-A8PP-01 1 100340348 100340348 C T AGL Missense_Mutation p.T355M 0.26 tolerated(0.05) benign(0.081) TCGA-VQ-A8PP-01 1 10207065 10207065 C T UBE4B Silent p.D836D 0.27 TCGA-VQ-A8PP-01 1 10699644 10699644 G A CASZ1 Silent p.A1545A 0.25 TCGA-VQ-A8PP-01 1 10702940 10702940 C T CASZ1 Missense_Mutation p.V1380M 0.09 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-VQ-A8PP-01 1 10720398 10720398 G A CASZ1 Missense_Mutation p.A234V 0.27 tolerated_low_confidence(0.08) benign(0.112) TCGA-VQ-A8PP-01 1 108185330 108185330 G A VAV3 Missense_Mutation p.P609S 0.10 deleterious(0.02) benign(0.189) TCGA-VQ-A8PP-01 1 108315467 108315467 T C VAV3 Splice_Site p.X149_splice 0.19 TCGA-VQ-A8PP-01 1 108679287 108679287 T C SLC25A24 Silent p.V474V 0.29 TCGA-VQ-A8PP-01 1 109811253 109811253 C A CELSR2 Missense_Mutation p.H2123Q 0.24 tolerated(0.19) benign(0.348) TCGA-VQ-A8PP-01 1 110201668 110201668 G A GSTM4 Missense_Mutation p.R168H 0.26 deleterious(0.02) benign(0.028) TCGA-VQ-A8PP-01 1 110582048 110582048 G T STRIP1 Missense_Mutation p.E164D 0.25 tolerated(0.52) possibly_damaging(0.63) TCGA-VQ-A8PP-01 1 110596337 110596337 G A STRIP1 Missense_Mutation p.A773T 0.31 tolerated(0.22) probably_damaging(0.987) TCGA-VQ-A8PP-01 1 110884182 110884182 C T RBM15 Missense_Mutation p.R719C 0.15 deleterious(0.01) possibly_damaging(0.642) TCGA-VQ-A8PP-01 1 111435024 111435024 G A CD53 Missense_Mutation p.G41R 0.23 deleterious(0.03) benign(0.032) TCGA-VQ-A8PP-01 1 112106531 112106531 C A ADORA3 Missense_Mutation p.R9M 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.711) TCGA-VQ-A8PP-01 1 11272403 11272403 G A MTOR Missense_Mutation p.T1176M 0.25 deleterious(0) probably_damaging(0.974) TCGA-VQ-A8PP-01 1 112999004 112999004 C A CTTNBP2NL Missense_Mutation p.S297Y 0.29 deleterious(0) possibly_damaging(0.855) TCGA-VQ-A8PP-01 1 113655106 113655106 C T LRIG2 Missense_Mutation p.P602S 0.18 deleterious(0) probably_damaging(1) TCGA-VQ-A8PP-01 1 115323159 115323159 C T SIKE1 Missense_Mutation p.A24T 0.20 tolerated(0.76) benign(0.007) TCGA-VQ-A8PP-01 1 115576140 115576140 A G TSHB Missense_Mutation p.T53A 0.39 deleterious(0.01) probably_damaging(0.967) TCGA-VQ-A8PP-01 1 117150926 117150926 G A IGSF3 Missense_Mutation p.T287I 0.28 deleterious(0) probably_damaging(0.979) TCGA-VQ-A8PP-01 1 11854918 11854918 C T MTHFR Missense_Mutation p.R345H 0.46 deleterious(0) probably_damaging(0.973) TCGA-VQ-A8PP-01 1 1203168 1203168 G A UBE2J2 Intron 0.09 TCGA-VQ-A8PP-01 1 12418521 12418521 G A VPS13D Silent p.T3335T 0.31 TCGA-VQ-A8PP-01 1 12854449 12854449 C T PRAMEF1 Missense_Mutation p.R225C 0.06 deleterious(0) benign(0.292) TCGA-VQ-A8PP-01 1 12955509 12955509 T C PRAMEF10 Missense_Mutation p.Q57R 0.22 deleterious(0.03) benign(0.099) TCGA-VQ-A8PP-01 1 12979822 12979822 C T PRAMEF7 Silent p.P338P 0.09 TCGA-VQ-A8PP-01 1 13448454 13448454 C T PRAMEF13 Missense_Mutation p.G341R 0.45 tolerated(0.27) benign(0.018) TCGA-VQ-A8PP-01 1 144879137 144879137 A G PDE4DIP Missense_Mutation p.L1438P 0.15 deleterious(0) probably_damaging(1) TCGA-VQ-A8PP-01 1 145537735 145537736 AG - ITGA10 Splice_Site p.X861_splice 0.30 TCGA-VQ-A8PP-01 1 150255988 150255988 C T C1orf51 Missense_Mutation p.T104I 0.24 tolerated(0.06) benign(0.243) TCGA-VQ-A8PP-01 1 150445261 150445261 T C RPRD2 Silent p.H1279H 0.26 TCGA-VQ-A8PP-01 1 150531885 150531885 G A ADAMTSL4 Silent p.L962L 0.25 TCGA-VQ-A8PP-01 1 151261079 151261079 C - ZNF687 Frame_Shift_Del p.H733Mfs*30 0.27 TCGA-VQ-A8PP-01 1 151553436 151553436 C A TUFT1 Silent p.R343R 0.13 TCGA-VQ-A8PP-01 1 151774033 151774033 G - LINGO4 Frame_Shift_Del p.P383Lfs*14 0.22 TCGA-VQ-A8PP-01 1 151993663 151993663 T C NBPF18P RNA 0.23 TCGA-VQ-A8PP-01 1 152191816 152191816 C T HRNR Silent p.S763S 0.19 TCGA-VQ-A8PP-01 1 152280711 152280711 G A FLG Silent p.A2217A 0.20 TCGA-VQ-A8PP-01 1 152286346 152286346 T C FLG Missense_Mutation p.H339R 0.30 probably_damaging(0.956) TCGA-VQ-A8PP-01 1 152328107 152328107 A G FLG2 Missense_Mutation p.F719L 0.05 unknown(0) TCGA-VQ-A8PP-01 1 153509774 153509774 A G S100A5 Nonstop_Mutation p.*93Rext*42 0.26 TCGA-VQ-A8PP-01 1 154401730 154401730 G - IL6R Frame_Shift_Del p.V50* 0.32 TCGA-VQ-A8PP-01 1 154562842 154562842 C T ADAR Missense_Mutation p.V772I 0.22 deleterious(0) probably_damaging(0.981) TCGA-VQ-A8PP-01 1 154960996 154960996 G A FLAD1 Missense_Mutation p.R263Q 0.33 deleterious(0.03) benign(0.187) TCGA-VQ-A8PP-01 1 155028695 155028695 G A ADAM15 Missense_Mutation p.R295Q 0.41 deleterious(0.05) possibly_damaging(0.744) TCGA-VQ-A8PP-01 1 155209752 155209752 G A GBA Missense_Mutation p.R78C 0.09 tolerated(0.11) possibly_damaging(0.867) TCGA-VQ-A8PP-01 1 155531903 155531903 A G ASH1L Intron 0.25 TCGA-VQ-A8PP-01 1 155723064 155723064 G A GON4L Missense_Mutation p.R1925W 0.27 deleterious_low_confidence(0) possibly_damaging(0.835) TCGA-VQ-A8PP-01 1 156128279 156128279 T C SEMA4A Splice_Site p.X154_splice 0.26 TCGA-VQ-A8PP-01 1 156262830 156262830 G A C1orf85 3'UTR 0.23 TCGA-VQ-A8PP-01 1 156703967 156703967 T C RRNAD1 Missense_Mutation p.L268P 0.35 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8PP-01 1 156756839 156756839 C - PRCC Frame_Shift_Del p.E322Nfs*105 0.16 TCGA-VQ-A8PP-01 1 156877956 156877956 G A PEAR1 Silent p.Q313Q 0.25 TCGA-VQ-A8PP-01 1 156880109 156880109 T C PEAR1 Missense_Mutation p.C588R 0.34 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PP-01 1 157490960 157490961 - A FCRL5 Frame_Shift_Ins p.H788Sfs*2 0.27 TCGA-VQ-A8PP-01 1 158617330 158617330 T C SPTA1 Missense_Mutation p.R1299G 0.20 deleterious(0) benign(0.389) TCGA-VQ-A8PP-01 1 159175853 159175854 CA - DARC Frame_Shift_Del p.T213Cfs*112 0.24 TCGA-VQ-A8PP-01 1 15953208 15953208 G T DDI2 Missense_Mutation p.L61F 0.05 deleterious(0) probably_damaging(1) TCGA-VQ-A8PP-01 1 160295426 160295427 - T COPA Frame_Shift_Ins p.N171Kfs*18 0.20 TCGA-VQ-A8PP-01 1 160310040 160310040 G A COPA Missense_Mutation p.H29Y 0.19 deleterious(0.01) possibly_damaging(0.708) TCGA-VQ-A8PP-01 1 160607007 160607007 C T SLAMF1 Missense_Mutation p.R130H 0.27 tolerated(0.92) benign(0.002) TCGA-VQ-A8PP-01 1 161089045 161089045 G A NIT1 Missense_Mutation p.A74T 0.29 deleterious(0) probably_damaging(0.989) TCGA-VQ-A8PP-01 1 161697322 161697322 T G FCRLB Missense_Mutation p.L384R 0.17 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-VQ-A8PP-01 1 16257809 16257809 G A SPEN Missense_Mutation p.A1692T 0.29 benign(0.002) TCGA-VQ-A8PP-01 1 16270145 16270145 G A ZBTB17 Nonsense_Mutation p.R509* 0.36 TCGA-VQ-A8PP-01 1 162740196 162740196 G A DDR2 Silent p.G466G 0.30 TCGA-VQ-A8PP-01 1 16373135 16373135 A G CLCNKB Missense_Mutation p.Q112R 0.12 deleterious(0.02) benign(0.371) TCGA-VQ-A8PP-01 1 164761969 164761969 C T PBX1 Silent p.Y168Y 0.25 TCGA-VQ-A8PP-01 1 167830110 167830110 T C ADCY10 Missense_Mutation p.Q603R 0.24 deleterious(0.04) benign(0.033) TCGA-VQ-A8PP-01 1 169102002 169102002 A T NME7 3'UTR 0.21 TCGA-VQ-A8PP-01 1 170967573 170967573 G T MROH9 Intron 0.26 TCGA-VQ-A8PP-01 1 171083478 171083478 C T FMO3 Missense_Mutation p.R387C 0.29 deleterious(0.01) benign(0.344) TCGA-VQ-A8PP-01 1 171293347 171293347 C T FMO4 Missense_Mutation p.T131I 0.27 tolerated(0.05) probably_damaging(0.966) TCGA-VQ-A8PP-01 1 17331940 17331940 C - ATP13A2 Frame_Shift_Del p.V73Cfs*20 0.24 TCGA-VQ-A8PP-01 1 173912704 173912704 C T RC3H1 Missense_Mutation p.G1004D 0.29 tolerated_low_confidence(0.2) benign(0.069) TCGA-VQ-A8PP-01 1 18014133 18014133 C T ARHGEF10L Silent p.G1025G 0.28 TCGA-VQ-A8PP-01 1 180772657 180772657 T C XPR1 Silent p.H119H 0.28 TCGA-VQ-A8PP-01 1 181732597 181732597 G A CACNA1E Missense_Mutation p.R1582H 0.26 deleterious(0) possibly_damaging(0.812) TCGA-VQ-A8PP-01 1 182821399 182821399 C A DHX9 Missense_Mutation p.P95H 0.23 tolerated(0.05) benign(0.417) TCGA-VQ-A8PP-01 1 186276700 186276700 G A PRG4 Missense_Mutation p.A617T 0.18 unknown(0) TCGA-VQ-A8PP-01 1 19181286 19181286 G A TAS1R2 Silent p.R226R 0.20 TCGA-VQ-A8PP-01 1 198492491 198492491 T - ATP6V1G3 3'UTR 0.47 TCGA-VQ-A8PP-01 1 20005552 20005552 A G HTR6 Silent p.P338P 0.22 TCGA-VQ-A8PP-01 1 200784758 200784758 C T CAMSAP2 Missense_Mutation p.P211S 0.32 tolerated(0.4) benign(0.004) TCGA-VQ-A8PP-01 1 200868724 200868724 C T C1orf106 Missense_Mutation p.A60V 0.29 deleterious(0) probably_damaging(0.941) TCGA-VQ-A8PP-01 1 204228411 204228411 C - PLEKHA6 Frame_Shift_Del p.V328Yfs*172 0.22 TCGA-VQ-A8PP-01 1 20474705 20474705 T C PLA2G2F Silent p.C149C 0.23 TCGA-VQ-A8PP-01 1 205884287 205884287 C - SLC26A9 Frame_Shift_Del p.C800Afs*10 0.29 TCGA-VQ-A8PP-01 1 206905976 206905976 A - MAPKAPK2 Frame_Shift_Del p.K374Rfs*11 0.26 TCGA-VQ-A8PP-01 1 209785149 209785149 G A CAMK1G Missense_Mutation p.A310T 0.28 deleterious(0.01) possibly_damaging(0.714) TCGA-VQ-A8PP-01 1 211749415 211749415 T A SLC30A1 Missense_Mutation p.D280V 0.29 tolerated(0.22) benign(0.016) TCGA-VQ-A8PP-01 1 214178556 214178556 T - PROX1 Frame_Shift_Del p.Y594Ifs*10 0.27 TCGA-VQ-A8PP-01 1 214505413 214505414 TG - SMYD2 Frame_Shift_Del p.F332* 0.26 TCGA-VQ-A8PP-01 1 218520021 218520021 T - TGFB2 5'UTR 0.41 TCGA-VQ-A8PP-01 1 21890589 21890589 C T ALPL Silent p.A176A 0.25 TCGA-VQ-A8PP-01 1 21890638 21890638 C - ALPL Frame_Shift_Del p.P194Lfs*4 0.29 TCGA-VQ-A8PP-01 1 220273838 220273838 A G IARS2 Missense_Mutation p.K133E 0.21 deleterious(0) probably_damaging(1) TCGA-VQ-A8PP-01 1 220279329 220279329 C T IARS2 Missense_Mutation p.T388M 0.25 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PP-01 1 220384146 220384146 A G RAB3GAP2 Silent p.T169T 0.24 TCGA-VQ-A8PP-01 1 22150007 22150007 C A LDLRAD2 3'UTR 0.36 TCGA-VQ-A8PP-01 1 22175267 22175267 C G HSPG2 Missense_Mutation p.V2536L 0.25 benign(0.425) TCGA-VQ-A8PP-01 1 222713356 222713356 A G HHIPL2 Silent p.S482S 0.30 TCGA-VQ-A8PP-01 1 22446593 22446593 C T WNT4 Missense_Mutation p.V336I 0.21 deleterious(0.03) probably_damaging(0.987) TCGA-VQ-A8PP-01 1 225686060 225686060 T G ENAH Missense_Mutation p.E576A 0.26 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PP-01 1 226259119 226259119 G A H3F3A Missense_Mutation p.R117H 0.15 tolerated_low_confidence(0.05) benign(0.017) TCGA-VQ-A8PP-01 1 227174166 227174166 G A ADCK3 Missense_Mutation p.A558T 0.25 deleterious(0.01) possibly_damaging(0.84) TCGA-VQ-A8PP-01 1 228345669 228345669 C A GJC2 Silent p.A70A 0.22 TCGA-VQ-A8PP-01 1 228565630 228565630 A C OBSCN Intron 0.17 TCGA-VQ-A8PP-01 1 229460857 229460857 A - CCSAP 3'UTR 0.38 TCGA-VQ-A8PP-01 1 231360279 231360279 A C C1orf131 Intron 0.31 TCGA-VQ-A8PP-01 1 231472746 231472746 T C EXOC8 Missense_Mutation p.D249G 0.15 tolerated(0.06) possibly_damaging(0.788) TCGA-VQ-A8PP-01 1 232144620 232144620 G T DISC1 Missense_Mutation p.R711M 0.08 tolerated(0.06) probably_damaging(0.912) TCGA-VQ-A8PP-01 1 233802528 233802528 C T KCNK1 Silent p.I181I 0.29 TCGA-VQ-A8PP-01 1 2340092 2340092 T C PEX10 Silent p.P133P 0.19 TCGA-VQ-A8PP-01 1 234510029 234510029 G - COA6 Frame_Shift_Del p.A61Pfs*9 0.15 TCGA-VQ-A8PP-01 1 235826245 235826245 C T LYST Missense_Mutation p.G3801R 0.27 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-VQ-A8PP-01 1 235969401 235969401 T - LYST Frame_Shift_Del p.K1012Rfs*7 0.19 TCGA-VQ-A8PP-01 1 236157088 236157088 G A NID1 Missense_Mutation p.P871L 0.23 tolerated(0.19) benign(0.002) TCGA-VQ-A8PP-01 1 240072358 240072358 A G CHRM3 Missense_Mutation p.N536S 0.28 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8PP-01 1 242253062 242253062 A - PLD5 3'UTR 0.22 TCGA-VQ-A8PP-01 1 242511408 242511408 C T PLD5 Missense_Mutation p.R109Q 0.32 deleterious(0.04) probably_damaging(0.918) TCGA-VQ-A8PP-01 1 247081669 247081669 G A AHCTF1 Nonsense_Mutation p.R11* 0.27 TCGA-VQ-A8PP-01 1 247319909 247319909 T - ZNF124 Frame_Shift_Del p.T277Lfs*31 0.26 TCGA-VQ-A8PP-01 1 247586615 247586615 T C NLRP3 Missense_Mutation p.Y123H 0.21 tolerated(0.36) benign(0.002) TCGA-VQ-A8PP-01 1 247587476 247587476 C T NLRP3 Missense_Mutation p.A244V 0.27 deleterious(0) probably_damaging(0.955) TCGA-VQ-A8PP-01 1 247654950 247654950 T C OR2W5 RNA 0.25 TCGA-VQ-A8PP-01 1 247655036 247655036 G - OR2W5 RNA 0.31 TCGA-VQ-A8PP-01 1 248308841 248308841 G A OR2M5 Missense_Mutation p.R131K 0.27 deleterious(0) benign(0.071) TCGA-VQ-A8PP-01 1 248366855 248366855 A C OR2M3 Silent p.A162A 0.29 TCGA-VQ-A8PP-01 1 248367247 248367247 G A OR2M3 Missense_Mutation p.R293H 0.29 deleterious(0.04) benign(0.013) TCGA-VQ-A8PP-01 1 248458094 248458094 G T OR2T12 Missense_Mutation p.H263N 0.25 tolerated(0.13) benign(0.006) TCGA-VQ-A8PP-01 1 248757032 248757032 A - OR2T10 Frame_Shift_Del p.F13Sfs*24 0.13 TCGA-VQ-A8PP-01 1 27100331 27100331 C - ARID1A Frame_Shift_Del p.P1349Lfs*132 0.22 TCGA-VQ-A8PP-01 1 27428570 27428570 G T SLC9A1 Silent p.S624S 0.18 TCGA-VQ-A8PP-01 1 27627805 27627805 C T WDTC1 Missense_Mutation p.R440C 0.09 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PP-01 1 27720942 27720942 G A GPR3 Missense_Mutation p.A214T 0.07 tolerated(0.12) benign(0.106) TCGA-VQ-A8PP-01 1 27876565 27876565 G A AHDC1 Nonsense_Mutation p.R688* 0.22 TCGA-VQ-A8PP-01 1 31532179 31532179 C T PUM1 Missense_Mutation p.A79T 0.23 deleterious_low_confidence(0) benign(0.019) TCGA-VQ-A8PP-01 1 32196474 32196474 G A BAI2 Missense_Mutation p.P1436L 0.20 tolerated(0.93) benign(0.276) TCGA-VQ-A8PP-01 1 32653623 32653623 A G TXLNA Silent p.Q222Q 0.29 TCGA-VQ-A8PP-01 1 32842249 32842250 - G BSDC1 Frame_Shift_Ins p.Q274Pfs*5 0.22 TCGA-VQ-A8PP-01 1 33583595 33583595 G A ADC Silent p.P374P 0.36 TCGA-VQ-A8PP-01 1 33613254 33613254 C A TRIM62 Missense_Mutation p.A318S 0.12 tolerated(0.41) probably_damaging(0.995) TCGA-VQ-A8PP-01 1 33777713 33777713 G A A3GALT2 Missense_Mutation p.A92V 0.35 tolerated(0.1) benign(0.113) TCGA-VQ-A8PP-01 1 33985099 33985099 T C CSMD2 3'UTR 0.36 TCGA-VQ-A8PP-01 1 34042938 34042938 G - CSMD2 Frame_Shift_Del p.Q2514Rfs*78 0.16 TCGA-VQ-A8PP-01 1 3418477 3418477 C T MEGF6 Missense_Mutation p.V733M 0.21 tolerated(0.11) benign(0.028) TCGA-VQ-A8PP-01 1 35650117 35650117 T C SFPQ Silent p.P688P 0.23 TCGA-VQ-A8PP-01 1 35846960 35846960 A - ZMYM4 Frame_Shift_Del p.K430Nfs*6 0.29 TCGA-VQ-A8PP-01 1 35857858 35857859 TG - ZMYM4 Frame_Shift_Del p.L878Qfs*27 0.20 TCGA-VQ-A8PP-01 1 36636587 36636587 C - MAP7D1 Frame_Shift_Del p.P23Qfs*33 0.43 TCGA-VQ-A8PP-01 1 37945935 37945935 C T ZC3H12A Missense_Mutation p.A163V 0.22 deleterious(0) probably_damaging(1) TCGA-VQ-A8PP-01 1 37979054 37979054 C T MEAF6 Missense_Mutation p.R59H 0.26 deleterious(0.04) benign(0.039) TCGA-VQ-A8PP-01 1 38227076 38227076 C T EPHA10 Splice_Site p.X284_splice 0.21 TCGA-VQ-A8PP-01 1 38348576 38348576 A G INPP5B Missense_Mutation p.L445P 0.22 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PP-01 1 39913211 39913211 A G MACF1 Silent p.P4512P 0.34 TCGA-VQ-A8PP-01 1 40235605 40235605 G A OXCT2 Silent p.C441C 0.24 TCGA-VQ-A8PP-01 1 40704624 40704624 T - RLF Frame_Shift_Del p.Y1419Ifs*6 0.23 TCGA-VQ-A8PP-01 1 40775806 40775806 C T COL9A2 Missense_Mutation p.A257T 0.26 tolerated(0.16) benign(0.001) TCGA-VQ-A8PP-01 1 42049667 42049667 T C HIVEP3 Missense_Mutation p.I268V 0.25 benign(0.004) TCGA-VQ-A8PP-01 1 43162908 43162908 C T YBX1 Missense_Mutation p.R239W 0.19 tolerated(0.2) benign(0.001) TCGA-VQ-A8PP-01 1 43783694 43783694 G A TIE1 Missense_Mutation p.R958H 0.33 tolerated(0.72) probably_damaging(0.966) TCGA-VQ-A8PP-01 1 43888878 43888878 G - SZT2 Frame_Shift_Del p.G717Afs*50 0.25 TCGA-VQ-A8PP-01 1 44432189 44432189 G - IPO13 Intron 0.59 TCGA-VQ-A8PP-01 1 46745243 46745243 G A LRRC41 Silent p.A688A 0.24 TCGA-VQ-A8PP-01 1 49224583 49224583 C T BEND5 Missense_Mutation p.R245Q 0.25 deleterious(0.03) probably_damaging(0.968) TCGA-VQ-A8PP-01 1 50884910 50884910 G A DMRTA2 Silent p.N352N 0.44 TCGA-VQ-A8PP-01 1 52442623 52442623 C T RAB3B Missense_Mutation p.G56D 0.12 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PP-01 1 52798462 52798462 C A ZFYVE9 Missense_Mutation p.S1154Y 0.33 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PP-01 1 53729886 53729886 C T LRP8 Missense_Mutation p.R537H 0.42 tolerated(0.17) benign(0.005) TCGA-VQ-A8PP-01 1 60309213 60309214 - A HOOK1 Frame_Shift_Ins p.Y247Vfs*19 0.18 TCGA-VQ-A8PP-01 1 62293185 62293185 G A INADL Missense_Mutation p.R637Q 0.29 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PP-01 1 62916272 62916272 A - USP1 Frame_Shift_Del p.N662Mfs*2 0.33 TCGA-VQ-A8PP-01 1 65313255 65313255 A G JAK1 Missense_Mutation p.I620T 0.30 deleterious(0) possibly_damaging(0.505) TCGA-VQ-A8PP-01 1 66838228 66838230 AGA - PDE4B In_Frame_Del p.K694del 0.29 TCGA-VQ-A8PP-01 1 6693065 6693065 G A THAP3 Missense_Mutation p.M216I 0.19 tolerated(0.14) benign(0.084) TCGA-VQ-A8PP-01 1 67142761 67142761 A G SGIP1 Missense_Mutation p.R241G 0.44 deleterious_low_confidence(0) benign(0.054) TCGA-VQ-A8PP-01 1 67242971 67242971 G A TCTEX1D1 Missense_Mutation p.R125Q 0.20 deleterious(0) benign(0.426) TCGA-VQ-A8PP-01 1 75037361 75037361 C T C1orf173 Missense_Mutation p.G1345R 0.21 tolerated(0.46) benign(0.056) TCGA-VQ-A8PP-01 1 75039018 75039018 T C C1orf173 Silent p.K792K 0.27 TCGA-VQ-A8PP-01 1 75139227 75139227 C A C1orf173 5'UTR 0.29 TCGA-VQ-A8PP-01 1 78099039 78099039 T C ZZZ3 Translation_Start_Site p.M1? 0.43 deleterious(0) probably_damaging(0.977) TCGA-VQ-A8PP-01 1 78958971 78958971 G A PTGFR Silent p.A181A 0.32 TCGA-VQ-A8PP-01 1 7997762 7997762 C T TNFRSF9 Missense_Mutation p.R134Q 0.10 tolerated(0.19) benign(0.086) TCGA-VQ-A8PP-01 1 84335709 84335709 T C TTLL7 Missense_Mutation p.K867R 0.33 tolerated_low_confidence(0.29) benign(0.201) TCGA-VQ-A8PP-01 1 84701100 84701100 C T PRKACB 3'UTR 0.18 TCGA-VQ-A8PP-01 1 86210393 86210393 C T COL24A1 Missense_Mutation p.R1543Q 0.25 deleterious(0.01) benign(0.314) TCGA-VQ-A8PP-01 1 889429 889429 C - NOC2L Frame_Shift_Del p.K245Sfs*41 0.17 TCGA-VQ-A8PP-01 1 90180223 90180223 C - LRRC8C Frame_Shift_Del p.P700Lfs*35 0.18 TCGA-VQ-A8PP-01 1 90399818 90399818 C T LRRC8D Silent p.F397F 0.26 TCGA-VQ-A8PP-01 1 9097987 9097987 A G SLC2A5 Missense_Mutation p.F424S 0.24 deleterious(0) probably_damaging(1) TCGA-VQ-A8PP-01 1 92442691 92442691 A - BRDT Frame_Shift_Del p.K238Nfs*8 0.28 TCGA-VQ-A8PP-01 1 94506924 94506924 G A ABCA4 Silent p.D1121D 0.28 TCGA-VQ-A8PP-01 1 9642461 9642461 G T SLC25A33 Nonsense_Mutation p.G290* 0.37 TCGA-VQ-A8PP-01 1 99157232 99157232 A T SNX7 Missense_Mutation p.I206F 0.30 deleterious(0.02) benign(0.2) TCGA-VQ-A8PP-01 1 99225621 99225621 G A SNX7 Silent p.T430T 0.48 TCGA-VQ-A8PP-01 1 99753573 99753573 A C LPPR4 Missense_Mutation p.D92A 0.26 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PP-01 20 10030136 10030136 G T ANKEF1 Nonsense_Mutation p.E307* 0.36 TCGA-VQ-A8PP-01 20 13869143 13869143 A T SEL1L2 Missense_Mutation p.S189T 0.10 tolerated(0.07) benign(0.401) TCGA-VQ-A8PP-01 20 1616965 1616965 C T SIRPG Missense_Mutation p.S206N 0.35 tolerated(0.54) benign(0.015) TCGA-VQ-A8PP-01 20 22562380 22562380 C T FOXA2 3'UTR 0.36 TCGA-VQ-A8PP-01 20 2293654 2293654 C T TGM3 Silent p.G217G 0.21 TCGA-VQ-A8PP-01 20 2843242 2843242 G A VPS16 Silent p.A363A 0.22 TCGA-VQ-A8PP-01 20 29965129 29965129 A G DEFB118 3'Flank 0.25 TCGA-VQ-A8PP-01 20 31380546 31380546 G A DNMT3B Missense_Mutation p.E346K 0.17 tolerated(0.91) probably_damaging(0.96) TCGA-VQ-A8PP-01 20 31671300 31671300 G - BPIFB4 Frame_Shift_Del p.G101Afs*132 0.18 TCGA-VQ-A8PP-01 20 33584450 33584450 G A MYH7B Missense_Mutation p.R1094H 0.38 probably_damaging(0.999) TCGA-VQ-A8PP-01 20 33764065 33764065 C A PROCR Silent p.S139S 0.33 TCGA-VQ-A8PP-01 20 34061768 34061768 C T CEP250 Missense_Mutation p.R488C 0.32 probably_damaging(0.999) TCGA-VQ-A8PP-01 20 34136332 34136332 A C ERGIC3 Missense_Mutation p.T178P 0.25 tolerated(0.3) benign(0.213) TCGA-VQ-A8PP-01 20 3556578 3556578 A C ATRN Missense_Mutation p.S733R 0.24 tolerated(0.07) benign(0.027) TCGA-VQ-A8PP-01 20 35689508 35689508 A - RBL1 Frame_Shift_Del p.F416Lfs*13 0.24 TCGA-VQ-A8PP-01 20 3653275 3653275 T G ADAM33 Splice_Site p.X438_splice 0.37 TCGA-VQ-A8PP-01 20 3678602 3678602 G A SIGLEC1 Silent p.T655T 0.20 TCGA-VQ-A8PP-01 20 37400200 37400200 A G ACTR5 Splice_Site p.X523_splice 0.19 TCGA-VQ-A8PP-01 20 40730851 40730851 C A PTPRT Missense_Mutation p.M1209I 0.22 deleterious(0.01) benign(0.007) TCGA-VQ-A8PP-01 20 42354972 42354972 A - GTSF1L Frame_Shift_Del p.P122Lfs*50 0.18 TCGA-VQ-A8PP-01 20 43726965 43726965 C A KCNS1 Missense_Mutation p.A150S 0.36 tolerated(1) benign(0.013) TCGA-VQ-A8PP-01 20 44519124 44519124 G A NEURL2 Silent p.S169S 0.21 TCGA-VQ-A8PP-01 20 4680176 4680176 A G PRNP Missense_Mutation p.K104E 0.35 deleterious(0.01) possibly_damaging(0.854) TCGA-VQ-A8PP-01 20 47837992 47837992 C - DDX27 Frame_Shift_Del p.I65Lfs*41 0.29 TCGA-VQ-A8PP-01 20 47860421 47860421 T C DDX27 3'UTR 0.26 TCGA-VQ-A8PP-01 20 47872450 47872451 - T ZNFX1 Frame_Shift_Ins p.R900Kfs*5 0.29 TCGA-VQ-A8PP-01 20 48604589 48604589 G A SNAI1 Missense_Mutation p.R264H 0.24 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-VQ-A8PP-01 20 4913191 4913191 C T SLC23A2 Silent p.K6K 0.24 TCGA-VQ-A8PP-01 20 49508879 49508879 G A ADNP Missense_Mutation p.A791V 0.23 deleterious(0.01) probably_damaging(0.946) TCGA-VQ-A8PP-01 20 50140384 50140384 G A NFATC2 Silent p.D132D 0.27 TCGA-VQ-A8PP-01 20 51872037 51872037 C T TSHZ2 Silent p.C680C 0.30 TCGA-VQ-A8PP-01 20 55027215 55027215 G A CASS4 Missense_Mutation p.S328N 0.21 tolerated(0.32) benign(0.008) TCGA-VQ-A8PP-01 20 57036331 57036331 G A APCDD1L Missense_Mutation p.P341S 0.21 tolerated(0.09) probably_damaging(0.999) TCGA-VQ-A8PP-01 20 57599126 57599126 T C TUBB1 Missense_Mutation p.L215P 0.34 deleterious_low_confidence(0) probably_damaging(1) TCGA-VQ-A8PP-01 20 57767014 57767014 G A ZNF831 Missense_Mutation p.A314T 0.27 tolerated(0.2) benign(0.041) TCGA-VQ-A8PP-01 20 60733756 60733756 A G SS18L1 Missense_Mutation p.Q33R 0.23 tolerated(0.06) probably_damaging(0.997) TCGA-VQ-A8PP-01 20 61440966 61440966 T C OGFR Missense_Mutation p.W117R 0.35 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PP-01 20 61834287 61834287 G A YTHDF1 Silent p.N335N 0.36 TCGA-VQ-A8PP-01 20 62126332 62126332 G A EEF1A2 Silent p.I149I 0.32 TCGA-VQ-A8PP-01 20 62187926 62187926 A C C20orf195 Missense_Mutation p.T304P 0.23 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PP-01 20 62192522 62192522 G A HELZ2 Silent p.D2353D 0.09 TCGA-VQ-A8PP-01 20 62572327 62572327 G A UCKL1 Silent p.H364H 0.25 TCGA-VQ-A8PP-01 20 62595175 62595176 - A ZNF512B Frame_Shift_Ins p.L526Afs*2 0.24 TCGA-VQ-A8PP-01 20 9404531 9404531 A G PLCB4 Missense_Mutation p.K807R 0.25 tolerated(0.83) benign(0.39) TCGA-VQ-A8PP-01 20 9546720 9546720 C T PAK7 Silent p.A434A 0.24 TCGA-VQ-A8PP-01 21 11049593 11049593 G A BAGE2 RNA 0.06 TCGA-VQ-A8PP-01 21 34060649 34060649 C A SYNJ1 Missense_Mutation p.R312M 0.28 deleterious(0) probably_damaging(1) TCGA-VQ-A8PP-01 21 34799292 34799292 T - IFNGR2 Frame_Shift_Del p.C174Vfs*29 0.33 TCGA-VQ-A8PP-01 21 37713773 37713773 A G MORC3 Missense_Mutation p.T229A 0.17 tolerated(0.32) benign(0.003) TCGA-VQ-A8PP-01 21 40578155 40578155 T - BRWD1 Frame_Shift_Del p.M1415* 0.12 TCGA-VQ-A8PP-01 21 41427756 41427756 C T DSCAM Missense_Mutation p.R1644Q 0.35 tolerated(0.18) possibly_damaging(0.82) TCGA-VQ-A8PP-01 21 45741715 45741715 T C PFKL Missense_Mutation p.V432A 0.48 tolerated(0.15) possibly_damaging(0.863) TCGA-VQ-A8PP-01 21 47531972 47531972 C T COL6A2 Silent p.I65I 0.27 TCGA-VQ-A8PP-01 21 47865301 47865301 T C PCNT 3'UTR 0.16 TCGA-VQ-A8PP-01 22 16267030 16267030 A G POTEH Silent p.G473G 0.09 TCGA-VQ-A8PP-01 22 17600933 17600933 A G CECR6 Missense_Mutation p.L362P 0.29 deleterious(0) probably_damaging(0.991) TCGA-VQ-A8PP-01 22 19968919 19968919 C T ARVCF Silent p.P237P 0.50 TCGA-VQ-A8PP-01 22 20229947 20229947 T C RTN4R Missense_Mutation p.N237D 0.32 deleterious(0.01) possibly_damaging(0.778) TCGA-VQ-A8PP-01 22 20780145 20780145 C T SCARF2 Silent p.A711A 0.50 TCGA-VQ-A8PP-01 22 20780148 20780148 C T SCARF2 Silent p.S710S 0.46 TCGA-VQ-A8PP-01 22 20796366 20796366 C A KLHL22 Missense_Mutation p.E633D 0.42 tolerated_low_confidence(0.26) benign(0.005) TCGA-VQ-A8PP-01 22 20819545 20819545 G T KLHL22 Missense_Mutation p.P238T 0.28 tolerated(0.22) possibly_damaging(0.812) TCGA-VQ-A8PP-01 22 21799658 21799659 - C HIC2 Frame_Shift_Ins p.R161Pfs*40 0.32 TCGA-VQ-A8PP-01 22 23437869 23437869 G A GNAZ 5'UTR 0.40 TCGA-VQ-A8PP-01 22 24179965 24179965 C T DERL3 Missense_Mutation p.R135H 0.24 deleterious(0.02) possibly_damaging(0.784) TCGA-VQ-A8PP-01 22 25331323 25331323 A C TMEM211 Missense_Mutation p.F123V 0.26 deleterious(0.01) benign(0.02) TCGA-VQ-A8PP-01 22 26937473 26937473 G - TPST2 Frame_Shift_Del p.R42Gfs*12 0.27 TCGA-VQ-A8PP-01 22 30761994 30761994 C T CCDC157 Missense_Mutation p.A2V 0.41 deleterious(0.03) probably_damaging(0.991) TCGA-VQ-A8PP-01 22 30953359 30953361 CTT - GAL3ST1 In_Frame_Del p.K7del 0.33 TCGA-VQ-A8PP-01 22 31669476 31669476 G T LIMK2 Missense_Mutation p.G512W 0.30 deleterious(0) probably_damaging(0.99) TCGA-VQ-A8PP-01 22 31741359 31741359 C A PATZ1 Missense_Mutation p.G77V 0.11 deleterious_low_confidence(0) probably_damaging(1) TCGA-VQ-A8PP-01 22 32100665 32100665 T C PRR14L Missense_Mutation p.Y1935C 0.42 tolerated(0.17) benign(0.024) TCGA-VQ-A8PP-01 22 36690293 36690293 C - MYH9 Frame_Shift_Del p.E1228Sfs*6 0.25 TCGA-VQ-A8PP-01 22 36863772 36863772 G A TXN2 3'UTR 0.35 TCGA-VQ-A8PP-01 22 37263493 37263493 G A NCF4 Missense_Mutation p.A111T 0.25 tolerated(0.44) benign(0.047) TCGA-VQ-A8PP-01 22 37603284 37603284 C T SSTR3 Missense_Mutation p.G187S 0.36 tolerated(0.05) benign(0.083) TCGA-VQ-A8PP-01 22 38084934 38084934 A G NOL12 Missense_Mutation p.T106A 0.27 deleterious(0.01) possibly_damaging(0.832) TCGA-VQ-A8PP-01 22 38349136 38349136 C A C22orf23 Missense_Mutation p.M7I 0.32 tolerated(0.32) benign(0.002) TCGA-VQ-A8PP-01 22 39411687 39411687 G - APOBEC3C Frame_Shift_Del p.C36Afs*7 0.24 TCGA-VQ-A8PP-01 22 40661063 40661065 AAC - TNRC6B In_Frame_Del p.N279del 0.23 TCGA-VQ-A8PP-01 22 41318492 41318492 A C XPNPEP3 Missense_Mutation p.N404T 0.25 tolerated(0.29) benign(0.005) TCGA-VQ-A8PP-01 22 41574285 41574285 A G EP300 Silent p.Q2190Q 0.33 TCGA-VQ-A8PP-01 22 41621065 41621065 C T L3MBTL2 Missense_Mutation p.T449I 0.31 deleterious(0) probably_damaging(1) TCGA-VQ-A8PP-01 22 41923278 41923278 C T POLR3H 3'UTR 0.26 TCGA-VQ-A8PP-01 22 41936738 41936738 T C POLR3H Missense_Mutation p.Y58C 0.23 deleterious(0.04) probably_damaging(0.95) TCGA-VQ-A8PP-01 22 42262936 42262936 A G SREBF2 Missense_Mutation p.S64G 0.28 tolerated(0.43) benign(0) TCGA-VQ-A8PP-01 22 44287019 44287019 C A PNPLA5 Missense_Mutation p.G117C 0.20 tolerated(0.24) probably_damaging(1) TCGA-VQ-A8PP-01 22 44368784 44368784 C T SAMM50 Missense_Mutation p.R155C 0.17 deleterious(0) probably_damaging(1) TCGA-VQ-A8PP-01 22 45757817 45757817 C T SMC1B Silent p.Q870Q 0.26 TCGA-VQ-A8PP-01 22 46098591 46098591 A - ATXN10 Frame_Shift_Del p.I173Lfs*7 0.09 TCGA-VQ-A8PP-01 22 46725257 46725257 T C GTSE1 Silent p.A643A 0.26 TCGA-VQ-A8PP-01 22 46761146 46761146 C T CELSR1 Missense_Mutation p.V2846I 0.30 tolerated(0.38) benign(0.005) TCGA-VQ-A8PP-01 22 46807568 46807568 G A CELSR1 Missense_Mutation p.A1567V 0.35 deleterious(0.03) possibly_damaging(0.874) TCGA-VQ-A8PP-01 22 50716316 50716316 C T PLXNB2 Missense_Mutation p.D1672N 0.31 deleterious(0) probably_damaging(1) TCGA-VQ-A8PP-01 22 50718921 50718921 C T PLXNB2 Missense_Mutation p.R1391H 0.29 deleterious(0) probably_damaging(1) TCGA-VQ-A8PP-01 22 51142355 51142355 C A SHANK3 Silent p.T576T 0.25 TCGA-VQ-A8PP-01 2 100210292 100210292 C T AFF3 Missense_Mutation p.A636T 0.43 tolerated(1) benign(0.002) TCGA-VQ-A8PP-01 2 10059231 10059231 A - TAF1B Frame_Shift_Del p.R447Efs*5 0.21 TCGA-VQ-A8PP-01 2 101009914 101009914 G A CHST10 Silent p.D288D 0.30 TCGA-VQ-A8PP-01 2 101650032 101650032 G T TBC1D8 Silent p.R583R 0.34 TCGA-VQ-A8PP-01 2 101924900 101924900 T C RNF149 Missense_Mutation p.T51A 0.28 tolerated(0.19) benign(0.266) TCGA-VQ-A8PP-01 2 103334978 103334978 G - MFSD9 Frame_Shift_Del p.S443Afs*6 0.22 TCGA-VQ-A8PP-01 2 105472917 105472917 C T POU3F3 Missense_Mutation p.P317S 0.27 deleterious(0.01) probably_damaging(0.93) TCGA-VQ-A8PP-01 2 109102162 109102163 - A GCC2 Frame_Shift_Ins p.E1231Gfs*11 0.22 TCGA-VQ-A8PP-01 2 112733040 112733040 A C MERTK Missense_Mutation p.T379P 0.29 tolerated(0.2) probably_damaging(0.912) TCGA-VQ-A8PP-01 2 11332385 11332385 T - ROCK2 Frame_Shift_Del p.K1351Sfs*17 0.26 TCGA-VQ-A8PP-01 2 11721045 11721045 C T GREB1 Intron 0.36 TCGA-VQ-A8PP-01 2 118582548 118582548 C T DDX18 Silent p.F413F 0.09 TCGA-VQ-A8PP-01 2 119604406 119604406 G A EN1 Missense_Mutation p.P113L 0.16 deleterious(0) probably_damaging(0.913) TCGA-VQ-A8PP-01 2 121746917 121746917 C T GLI2 Missense_Mutation p.P1143S 0.21 deleterious(0.01) probably_damaging(0.996) TCGA-VQ-A8PP-01 2 125555738 125555738 A G CNTNAP5 Missense_Mutation p.T1019A 0.17 tolerated(0.32) benign(0.033) TCGA-VQ-A8PP-01 2 128084375 128084375 C T MAP3K2 Missense_Mutation p.R162K 0.23 deleterious(0.01) probably_damaging(0.986) TCGA-VQ-A8PP-01 2 128388874 128388874 G A MYO7B Silent p.Q1651Q 0.28 TCGA-VQ-A8PP-01 2 12858568 12858568 C T TRIB2 Silent p.S45S 0.29 TCGA-VQ-A8PP-01 2 130792720 130792721 CA - FAR2P1 5'Flank 0.26 TCGA-VQ-A8PP-01 2 132240184 132240184 G A TUBA3D Silent p.Q372Q 0.19 TCGA-VQ-A8PP-01 2 135738548 135738548 A G MAP3K19 Missense_Mutation p.C1255R 0.32 deleterious(0) probably_damaging(1) TCGA-VQ-A8PP-01 2 135908033 135908033 G A RAB3GAP1 Missense_Mutation p.R673H 0.21 deleterious(0) probably_damaging(0.989) TCGA-VQ-A8PP-01 2 136594363 136594363 T C LCT Missense_Mutation p.Q126R 0.40 tolerated(0.32) benign(0.05) TCGA-VQ-A8PP-01 2 136700960 136700960 T C DARS Silent p.L137L 0.26 TCGA-VQ-A8PP-01 2 138771444 138771444 T C HNMT Missense_Mutation p.L208P 0.08 deleterious(0) probably_damaging(1) TCGA-VQ-A8PP-01 2 141806579 141806579 C G LRP1B Missense_Mutation p.E589Q 0.39 benign(0.116) TCGA-VQ-A8PP-01 2 148683686 148683687 AA - ACVR2A Frame_Shift_Del p.K437Efs*19 0.23 TCGA-VQ-A8PP-01 2 148712917 148712917 T - ORC4 Frame_Shift_Del p.G146Vfs*9 0.20 TCGA-VQ-A8PP-01 2 153415331 153415331 C T FMNL2 Missense_Mutation p.A146V 0.25 benign(0.18) TCGA-VQ-A8PP-01 2 159077217 159077217 T - CCDC148 Frame_Shift_Del p.K420Nfs*15 0.17 TCGA-VQ-A8PP-01 2 160604680 160604680 T - MARCH7 Frame_Shift_Del p.S296Hfs*9 0.28 TCGA-VQ-A8PP-01 2 165969422 165969422 C - SCN3A Frame_Shift_Del p.W1272Cfs*4 0.24 TCGA-VQ-A8PP-01 2 169764239 169764239 A - G6PC2 Frame_Shift_Del p.K241Sfs*20 0.26 TCGA-VQ-A8PP-01 2 170044630 170044630 C A LRP2 Nonsense_Mutation p.G3060* 0.23 TCGA-VQ-A8PP-01 2 171242715 171242716 GA - MYO3B Frame_Shift_Del p.S438Wfs*23 0.26 TCGA-VQ-A8PP-01 2 171850197 171850197 A G TLK1 3'UTR 0.23 TCGA-VQ-A8PP-01 2 174085986 174085986 G A MLTK Intron 0.25 TCGA-VQ-A8PP-01 2 176948631 176948631 C T EVX2 5'UTR 0.45 TCGA-VQ-A8PP-01 2 17913088 17913088 C T SMC6 Missense_Mutation p.S134N 0.33 tolerated(0.15) benign(0.001) TCGA-VQ-A8PP-01 2 179550280 179550280 A T TTN Missense_Mutation p.I10786N 0.33 TCGA-VQ-A8PP-01 2 179574302 179574302 C T TTN Missense_Mutation p.V9582I 0.22 TCGA-VQ-A8PP-01 2 179596617 179596617 C T TTN Missense_Mutation p.G5662D 0.31 TCGA-VQ-A8PP-01 2 182359449 182359449 A G ITGA4 Missense_Mutation p.R417G 0.20 deleterious(0.03) probably_damaging(0.99) TCGA-VQ-A8PP-01 2 182374526 182374526 A - ITGA4 Frame_Shift_Del p.T615Qfs*2 0.18 TCGA-VQ-A8PP-01 2 185801436 185801436 A G ZNF804A Missense_Mutation p.Q438R 0.34 deleterious(0) probably_damaging(0.932) TCGA-VQ-A8PP-01 2 185802712 185802712 A - ZNF804A Frame_Shift_Del p.I865Sfs*11 0.23 TCGA-VQ-A8PP-01 2 190647432 190647432 A G ORMDL1 5'UTR 0.16 TCGA-VQ-A8PP-01 2 1926124 1926124 G C MYT1L Missense_Mutation p.L473V 0.24 tolerated(0.28) possibly_damaging(0.467) TCGA-VQ-A8PP-01 2 19553400 19553400 G A OSR1 Missense_Mutation p.T56M 0.13 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-VQ-A8PP-01 2 197639875 197639875 C T GTF3C3 Missense_Mutation p.S599N 0.37 tolerated(0.38) benign(0.001) TCGA-VQ-A8PP-01 2 20200211 20200211 T - MATN3 Frame_Shift_Del p.T387Hfs*10 0.19 TCGA-VQ-A8PP-01 2 203420130 203420130 A - BMPR2 Frame_Shift_Del p.N583Tfs*44 0.30 TCGA-VQ-A8PP-01 2 203623980 203623980 C T FAM117B Missense_Mutation p.P452L 0.30 tolerated(0.23) probably_damaging(0.999) TCGA-VQ-A8PP-01 2 206641119 206641119 T G NRP2 Intron 0.36 TCGA-VQ-A8PP-01 2 206641319 206641319 T - NRP2 Intron 0.47 TCGA-VQ-A8PP-01 2 206659538 206659538 C T NRP2 Missense_Mutation p.S851L 0.24 tolerated(0.39) benign(0.003) TCGA-VQ-A8PP-01 2 207175242 207175242 C T ZDBF2 Missense_Mutation p.T1997I 0.38 tolerated(0.25) possibly_damaging(0.507) TCGA-VQ-A8PP-01 2 208618337 208618337 A G CCNYL1 Missense_Mutation p.K281R 0.24 deleterious(0.03) benign(0.209) TCGA-VQ-A8PP-01 2 20871057 20871057 G A GDF7 Missense_Mutation p.A409T 0.20 tolerated(0.05) probably_damaging(0.989) TCGA-VQ-A8PP-01 2 21225123 21225123 G C APOB Missense_Mutation p.P4391A 0.21 benign(0.084) TCGA-VQ-A8PP-01 2 215845343 215845343 T C ABCA12 Missense_Mutation p.H1535R 0.27 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PP-01 2 216965258 216965258 C T TMEM169 Missense_Mutation p.T296M 0.31 tolerated_low_confidence(0.06) benign(0.045) TCGA-VQ-A8PP-01 2 219266937 219266937 A G CTDSP1 Missense_Mutation p.K107R 0.24 tolerated(0.07) benign(0.06) TCGA-VQ-A8PP-01 2 219619233 219619233 T - TTLL4 3'UTR 0.21 TCGA-VQ-A8PP-01 2 220040326 220040326 C T CNPPD1 Missense_Mutation p.A83T 0.30 deleterious(0.01) possibly_damaging(0.466) TCGA-VQ-A8PP-01 2 220074983 220074983 T C ABCB6 Missense_Mutation p.I797V 0.39 tolerated(0.16) benign(0.002) TCGA-VQ-A8PP-01 2 220083075 220083075 T C ABCB6 Silent p.L107L 0.25 TCGA-VQ-A8PP-01 2 220355459 220355459 C T SPEG Missense_Mutation p.R3056W 0.19 possibly_damaging(0.888) TCGA-VQ-A8PP-01 2 220413934 220413934 G A TMEM198 Missense_Mutation p.R268H 0.26 deleterious(0.04) possibly_damaging(0.522) TCGA-VQ-A8PP-01 2 220480896 220480896 C T STK11IP Missense_Mutation p.A1094V 0.27 tolerated(0.25) benign(0.012) TCGA-VQ-A8PP-01 2 222307562 222307562 G A EPHA4 Silent p.G687G 0.37 TCGA-VQ-A8PP-01 2 223464670 223464670 C - FARSB Frame_Shift_Del p.G532Dfs*3 0.22 TCGA-VQ-A8PP-01 2 223783922 223783922 T C ACSL3 Splice_Site p.X269_splice 0.23 TCGA-VQ-A8PP-01 2 224760346 224760346 A G WDFY1 Silent p.G200G 0.25 TCGA-VQ-A8PP-01 2 227892634 227892634 C A COL4A4 Silent p.G1355G 0.11 TCGA-VQ-A8PP-01 2 233246046 233246046 C T ALPP Silent p.G426G 0.10 TCGA-VQ-A8PP-01 2 233246247 233246247 C T ALPP Silent p.D450D 0.19 TCGA-VQ-A8PP-01 2 233839492 233839492 C A NGEF Nonsense_Mutation p.E37* 0.05 TCGA-VQ-A8PP-01 2 233995241 233995241 C T INPP5D Missense_Mutation p.A183V 0.22 tolerated(0.44) possibly_damaging(0.477) TCGA-VQ-A8PP-01 2 234627977 234627977 T - UGT1A4 Frame_Shift_Del p.W173Gfs*8 0.23 TCGA-VQ-A8PP-01 2 238461040 238461040 A C MLPH Missense_Mutation p.N579T 0.33 deleterious(0) possibly_damaging(0.656) TCGA-VQ-A8PP-01 2 238725977 238725977 A - RBM44 Frame_Shift_Del p.E142Rfs*57 0.20 TCGA-VQ-A8PP-01 2 239167160 239167160 T C PER2 Missense_Mutation p.S585G 0.20 deleterious(0.02) probably_damaging(0.993) TCGA-VQ-A8PP-01 2 239264662 239264662 A T TRAF3IP1 Missense_Mutation p.I544F 0.33 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8PP-01 2 240066293 240066293 G A HDAC4 Missense_Mutation p.P284L 0.35 tolerated(0.11) benign(0.035) TCGA-VQ-A8PP-01 2 240944651 240944651 C T NDUFA10 Missense_Mutation p.R289H 0.29 tolerated(0.57) benign(0.022) TCGA-VQ-A8PP-01 2 240969105 240969105 C T OR6B2 Missense_Mutation p.V248I 0.35 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8PP-01 2 241808308 241808308 C - AGXT Frame_Shift_Del p.K12Rfs*34 0.61 TCGA-VQ-A8PP-01 2 242155542 242155542 C T ANO7 Missense_Mutation p.R675C 0.06 tolerated(0.11) benign(0.009) TCGA-VQ-A8PP-01 2 242179467 242179467 C - HDLBP Frame_Shift_Del p.G747Afs*27 0.23 TCGA-VQ-A8PP-01 2 26533728 26533728 C T GPR113 Silent p.L956L 0.29 TCGA-VQ-A8PP-01 2 27282285 27282285 G T AGBL5 Intron 0.26 TCGA-VQ-A8PP-01 2 27485749 27485749 C - SLC30A3 Frame_Shift_Del p.G9Afs*8 0.34 TCGA-VQ-A8PP-01 2 27535548 27535548 T C MPV17 Missense_Mutation p.Q93R 0.20 deleterious(0) probably_damaging(0.971) TCGA-VQ-A8PP-01 2 31805971 31805971 G A SRD5A2 RNA 0.24 TCGA-VQ-A8PP-01 2 32463353 32463353 A G NLRC4 Missense_Mutation p.L790P 0.15 deleterious(0) probably_damaging(0.992) TCGA-VQ-A8PP-01 2 37113874 37113874 T C STRN Missense_Mutation p.K343E 0.28 deleterious(0.01) possibly_damaging(0.905) TCGA-VQ-A8PP-01 2 37306262 37306262 C T HEATR5B Splice_Site p.X113_splice 0.18 TCGA-VQ-A8PP-01 2 37464941 37464941 A - NDUFAF7 Frame_Shift_Del p.S115Afs*21 0.26 TCGA-VQ-A8PP-01 2 37501731 37501731 T C PRKD3 Missense_Mutation p.Y495C 0.22 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8PP-01 2 38972225 38972227 ATA - SRSF7 3'UTR 0.16 TCGA-VQ-A8PP-01 2 39213019 39213020 GT - SOS1 Frame_Shift_Del p.H1316Pfs*29 0.15 TCGA-VQ-A8PP-01 2 44999316 44999316 G A CAMKMT 3'UTR 0.26 TCGA-VQ-A8PP-01 2 48027807 48027807 A - MSH6 Frame_Shift_Del p.N897Ifs*9 0.23 TCGA-VQ-A8PP-01 2 54093345 54093345 T - PSME4 Frame_Shift_Del p.T1805Pfs*69 0.28 TCGA-VQ-A8PP-01 2 54858470 54858477 GAGGCTGA - SPTBN1 Frame_Shift_Del p.E1098Afs*86 0.21 TCGA-VQ-A8PP-01 2 55253228 55253229 TT - RTN4 Frame_Shift_Del p.K669Sfs*9 0.25 TCGA-VQ-A8PP-01 2 61331111 61331111 C T KIAA1841 Missense_Mutation p.P497S 0.17 tolerated(0.18) probably_damaging(0.999) TCGA-VQ-A8PP-01 2 63091972 63091972 C T EHBP1 Silent p.F323F 0.30 TCGA-VQ-A8PP-01 2 66795869 66795869 T G MEIS1 Missense_Mutation p.H365Q 0.29 tolerated(0.23) benign(0.08) TCGA-VQ-A8PP-01 2 67631108 67631108 A G ETAA1 Missense_Mutation p.T432A 0.18 tolerated(0.32) benign(0.228) TCGA-VQ-A8PP-01 2 69049762 69049762 C A ARHGAP25 Silent p.S497S 0.19 TCGA-VQ-A8PP-01 2 70188760 70188760 C A ASPRV1 Missense_Mutation p.A21S 0.14 tolerated_low_confidence(0.43) benign(0.018) TCGA-VQ-A8PP-01 2 70520786 70520786 T C SNRPG 5'UTR 0.28 TCGA-VQ-A8PP-01 2 71206292 71206292 G A ANKRD53 Missense_Mutation p.R79H 0.22 tolerated(0.23) benign(0.146) TCGA-VQ-A8PP-01 2 71766338 71766338 G A DYSF Silent p.S515S 0.20 TCGA-VQ-A8PP-01 2 73717154 73717154 C T ALMS1 Missense_Mutation p.P2689S 0.27 benign(0.32) TCGA-VQ-A8PP-01 2 74474357 74474357 G A SLC4A5 Missense_Mutation p.A622V 0.30 deleterious(0.02) benign(0.291) TCGA-VQ-A8PP-01 2 74652057 74652057 G A WDR54 Missense_Mutation p.R197Q 0.24 tolerated(0.28) benign(0.006) TCGA-VQ-A8PP-01 2 74701835 74701835 T C CCDC142 Silent p.P690P 0.31 TCGA-VQ-A8PP-01 2 74709829 74709829 A C CCDC142 Missense_Mutation p.W46G 0.24 tolerated_low_confidence(0.3) benign(0.073) TCGA-VQ-A8PP-01 2 84518167 84518167 A G FUNDC2P2 RNA 0.28 TCGA-VQ-A8PP-01 2 85662533 85662533 C T SH2D6 Intron 0.31 TCGA-VQ-A8PP-01 2 86075232 86075232 G A ST3GAL5 Silent p.S138S 0.22 TCGA-VQ-A8PP-01 2 86258479 86258479 C T POLR1A Missense_Mutation p.D1518N 0.23 deleterious(0) probably_damaging(1) TCGA-VQ-A8PP-01 2 88082717 88082717 G T RGPD2 Missense_Mutation p.R1276S 0.31 deleterious(0.01) possibly_damaging(0.555) TCGA-VQ-A8PP-01 2 88422692 88422692 A - FABP1 Intron 0.11 TCGA-VQ-A8PP-01 2 8873723 8873723 C A KIDINS220 Missense_Mutation p.G1302C 0.27 deleterious_low_confidence(0.03) possibly_damaging(0.622) TCGA-VQ-A8PP-01 2 89265799 89265799 T C IGKV1-6 Silent p.L111L 0.33 TCGA-VQ-A8PP-01 2 89976446 89976446 A G IGKV2D-30 Missense_Mutation p.E106G 0.14 deleterious(0.01) probably_damaging(0.91) TCGA-VQ-A8PP-01 2 96956187 96956187 A G SNRNP200 Silent p.H873H 0.37 TCGA-VQ-A8PP-01 2 96993404 96993404 G A ITPRIPL1 Silent p.P353P 0.34 TCGA-VQ-A8PP-01 2 98275895 98275895 C T ACTR1B Missense_Mutation p.V79M 0.23 tolerated(0.05) benign(0.041) TCGA-VQ-A8PP-01 2 98428986 98428986 G A TMEM131 Silent p.D587D 0.24 TCGA-VQ-A8PP-01 2 99976805 99976805 A - EIF5B Frame_Shift_Del p.K50Sfs*10 0.33 TCGA-VQ-A8PP-01 2 99978077 99978077 G A EIF5B Missense_Mutation p.R238H 0.23 benign(0.001) TCGA-VQ-A8PP-01 3 100035022 100035022 T C TBC1D23 Missense_Mutation p.Y560H 0.16 tolerated(0.51) possibly_damaging(0.675) TCGA-VQ-A8PP-01 3 100074196 100074196 T - NIT2 3'UTR 0.52 TCGA-VQ-A8PP-01 3 100489731 100489731 G A ABI3BP Missense_Mutation p.R822W 0.50 tolerated(0.07) probably_damaging(0.973) TCGA-VQ-A8PP-01 3 10138023 10138023 C T FANCD2 Missense_Mutation p.T1351M 0.36 tolerated(0.28) benign(0.134) TCGA-VQ-A8PP-01 3 101390034 101390034 G A ZBTB11 Nonsense_Mutation p.R240* 0.54 TCGA-VQ-A8PP-01 3 101484458 101484459 - T CEP97 3'UTR 0.26 TCGA-VQ-A8PP-01 3 107492023 107492023 C T BBX Silent p.S485S 0.19 TCGA-VQ-A8PP-01 3 108133153 108133153 A G MYH15 Silent p.N1377N 0.15 TCGA-VQ-A8PP-01 3 112534798 112534798 C T CD200R1L 3'UTR 0.16 TCGA-VQ-A8PP-01 3 113619945 113619945 C A GRAMD1C Missense_Mutation p.A203D 0.19 deleterious(0.02) possibly_damaging(0.859) TCGA-VQ-A8PP-01 3 114069198 114069198 T - ZBTB20 Frame_Shift_Del p.K576Sfs*42 0.29 TCGA-VQ-A8PP-01 3 118917947 118917947 G - UPK1B Frame_Shift_Del p.V233Lfs*53 0.16 TCGA-VQ-A8PP-01 3 118948948 118948948 T - B4GALT4 5'UTR 0.38 TCGA-VQ-A8PP-01 3 119263452 119263452 A T CD80 Nonsense_Mutation p.Y121* 0.23 TCGA-VQ-A8PP-01 3 121207482 121207483 - T POLQ Frame_Shift_Ins p.N1433Efs*2 0.08 TCGA-VQ-A8PP-01 3 121208877 121208877 A G POLQ Silent p.S967S 0.17 TCGA-VQ-A8PP-01 3 121437317 121437317 T C GOLGB1 Missense_Mutation p.E268G 0.48 probably_damaging(1) TCGA-VQ-A8PP-01 3 123036924 123036924 G A ADCY5 Missense_Mutation p.A766V 0.18 tolerated(0.18) benign(0.044) TCGA-VQ-A8PP-01 3 124160890 124160890 C T KALRN Silent p.P1097P 0.33 TCGA-VQ-A8PP-01 3 124201719 124201719 G T KALRN Missense_Mutation p.R1417M 0.22 deleterious(0) probably_damaging(1) TCGA-VQ-A8PP-01 3 12458368 12458368 A G PPARG Missense_Mutation p.K329E 0.25 deleterious(0.02) probably_damaging(0.998) TCGA-VQ-A8PP-01 3 125266311 125266311 T - OSBPL11 Frame_Shift_Del p.T594Lfs*26 0.33 TCGA-VQ-A8PP-01 3 126062510 126062510 A - KLF15 3'UTR 0.28 TCGA-VQ-A8PP-01 3 126739105 126739105 T C PLXNA1 Missense_Mutation p.I1319T 0.52 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PP-01 3 12856784 12856784 G A CAND2 Missense_Mutation p.R384H 0.09 deleterious(0) possibly_damaging(0.893) TCGA-VQ-A8PP-01 3 130282211 130282211 C T COL6A6 Missense_Mutation p.P122S 0.27 tolerated(0.38) benign(0.328) TCGA-VQ-A8PP-01 3 130463851 130463851 A G PIK3R4 Missense_Mutation p.L71P 0.48 deleterious(0) probably_damaging(0.984) TCGA-VQ-A8PP-01 3 132349358 132349358 T C ACAD11 Missense_Mutation p.R296G 0.24 tolerated(0.12) possibly_damaging(0.461) TCGA-VQ-A8PP-01 3 135979372 135979372 T C PCCB Missense_Mutation p.C162R 0.47 deleterious_low_confidence(0) possibly_damaging(0.883) TCGA-VQ-A8PP-01 3 138176424 138176424 C T ESYT3 Silent p.N173N 0.05 TCGA-VQ-A8PP-01 3 138192429 138192429 C A ESYT3 Silent p.R763R 0.43 TCGA-VQ-A8PP-01 3 138739098 138739098 C T PRR23B Missense_Mutation p.V136I 0.22 tolerated(0.29) benign(0.112) TCGA-VQ-A8PP-01 3 142137423 142137423 A G XRN1 Silent p.D423D 0.07 TCGA-VQ-A8PP-01 3 145788604 145788604 C T PLOD2 Missense_Mutation p.G726D 0.36 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PP-01 3 147114090 147114090 C T ZIC4 Silent p.P129P 0.36 TCGA-VQ-A8PP-01 3 148577613 148577613 G - CPB1 Frame_Shift_Del p.G361Afs*59 0.17 TCGA-VQ-A8PP-01 3 151164709 151164709 C - IGSF10 Frame_Shift_Del p.R1021Gfs*41 0.08 TCGA-VQ-A8PP-01 3 151545684 151545685 - A AADAC Frame_Shift_Ins p.Y311Ifs*15 0.31 TCGA-VQ-A8PP-01 3 15262356 15262356 A C CAPN7 Missense_Mutation p.K169T 0.17 tolerated(0.52) benign(0.002) TCGA-VQ-A8PP-01 3 153840036 153840036 C T ARHGEF26 Silent p.G85G 0.14 TCGA-VQ-A8PP-01 3 153840221 153840221 C T ARHGEF26 Missense_Mutation p.P147L 0.37 tolerated_low_confidence(0.1) benign(0.079) TCGA-VQ-A8PP-01 3 153840374 153840374 C T ARHGEF26 Missense_Mutation p.P198L 0.14 tolerated_low_confidence(0.19) benign(0.004) TCGA-VQ-A8PP-01 3 155611471 155611471 A G GMPS Missense_Mutation p.I64M 0.33 tolerated(0.08) benign(0.424) TCGA-VQ-A8PP-01 3 160803633 160803633 G A B3GALNT1 Missense_Mutation p.R304C 0.14 tolerated(0.15) benign(0.003) TCGA-VQ-A8PP-01 3 164907954 164907954 C T SLITRK3 Missense_Mutation p.R222K 0.41 tolerated(0.39) probably_damaging(0.996) TCGA-VQ-A8PP-01 3 169501317 169501317 A T MYNN Silent p.G484G 0.46 TCGA-VQ-A8PP-01 3 169846541 169846541 A C PHC3 Silent p.T573T 0.18 TCGA-VQ-A8PP-01 3 170021019 170021019 A - PRKCI 3'UTR 0.39 TCGA-VQ-A8PP-01 3 170585894 170585894 G A RPL22L1 Silent p.V44V 0.32 TCGA-VQ-A8PP-01 3 176750814 176750814 C T TBL1XR1 Missense_Mutation p.G454D 0.53 deleterious(0.01) probably_damaging(0.968) TCGA-VQ-A8PP-01 3 178927980 178927980 T C PIK3CA Missense_Mutation p.C420R 0.43 tolerated(0.21) possibly_damaging(0.893) TCGA-VQ-A8PP-01 3 179052260 179052260 T - ZNF639 3'UTR 0.28 TCGA-VQ-A8PP-01 3 179287926 179287926 C T ACTL6A Silent p.G58G 0.43 TCGA-VQ-A8PP-01 3 181431011 181431011 C - SOX2 Frame_Shift_Del p.S290Afs*81 0.16 TCGA-VQ-A8PP-01 3 182575784 182575785 - A ATP11B Frame_Shift_Ins p.T326Nfs*7 0.14 TCGA-VQ-A8PP-01 3 182871706 182871706 C A LAMP3 Missense_Mutation p.A175S 0.22 tolerated(0.64) benign(0.026) TCGA-VQ-A8PP-01 3 183210296 183210296 C T KLHL6 Missense_Mutation p.R517H 0.09 tolerated(0.57) benign(0) TCGA-VQ-A8PP-01 3 183995172 183995172 C - ECE2 Frame_Shift_Del p.L252Cfs*22 0.32 TCGA-VQ-A8PP-01 3 184026272 184026272 C T PSMD2 Silent p.L821L 0.36 TCGA-VQ-A8PP-01 3 184297376 184297376 T C EPHB3 Missense_Mutation p.V638A 0.55 deleterious(0) probably_damaging(1) TCGA-VQ-A8PP-01 3 184953084 184953084 G A EHHADH Silent p.H115H 0.11 TCGA-VQ-A8PP-01 3 185797681 185797681 G A ETV5 Missense_Mutation p.A192V 0.41 tolerated(0.19) benign(0.02) TCGA-VQ-A8PP-01 3 186293717 186293717 T - DNAJB11 Frame_Shift_Del p.S107Hfs*30 0.10 TCGA-VQ-A8PP-01 3 186358354 186358354 C A FETUB Silent p.G35G 0.44 TCGA-VQ-A8PP-01 3 189526270 189526270 C T TP63 Silent p.D178D 0.08 TCGA-VQ-A8PP-01 3 193343941 193343941 C T OPA1 Missense_Mutation p.R229C 0.19 deleterious(0.04) possibly_damaging(0.586) TCGA-VQ-A8PP-01 3 194407629 194407629 G A FAM43A Missense_Mutation p.G25D 0.43 deleterious(0.03) probably_damaging(1) TCGA-VQ-A8PP-01 3 194790714 194790714 C T XXYLT1 Silent p.P304P 0.42 TCGA-VQ-A8PP-01 3 195792411 195792411 G T TFRC Silent p.T367T 0.16 TCGA-VQ-A8PP-01 3 196043013 196043013 T C TCTEX1D2 Missense_Mutation p.Q68R 0.42 tolerated(0.13) benign(0.392) TCGA-VQ-A8PP-01 3 2967354 2967354 A G CNTN4 Missense_Mutation p.T417A 0.15 tolerated(0.36) benign(0.349) TCGA-VQ-A8PP-01 3 3216891 3216892 - T CRBN Frame_Shift_Ins p.P44Tfs*7 0.21 TCGA-VQ-A8PP-01 3 33425691 33425691 C T FBXL2 Missense_Mutation p.R388W 0.20 deleterious(0) benign(0.185) TCGA-VQ-A8PP-01 3 36869795 36869795 G A TRANK1 Missense_Mutation p.R2917W 0.23 deleterious_low_confidence(0.04) benign(0.035) TCGA-VQ-A8PP-01 3 37038200 37038200 G T MLH1 Missense_Mutation p.R69S 0.39 deleterious(0) possibly_damaging(0.823) TCGA-VQ-A8PP-01 3 37070349 37070349 C - MLH1 Frame_Shift_Del p.R497Gfs*11 0.23 TCGA-VQ-A8PP-01 3 38125647 38125647 A G DLEC1 Splice_Site p.X392_splice 0.15 TCGA-VQ-A8PP-01 3 38739799 38739799 T C SCN10A Missense_Mutation p.I1638V 0.08 deleterious(0.03) probably_damaging(0.974) TCGA-VQ-A8PP-01 3 38927650 38927650 T A SCN11A Missense_Mutation p.D972V 0.33 deleterious(0.01) benign(0.16) TCGA-VQ-A8PP-01 3 39171618 39171618 C T TTC21A Silent p.G735G 0.25 TCGA-VQ-A8PP-01 3 39229197 39229197 G A XIRP1 Silent p.D580D 0.20 TCGA-VQ-A8PP-01 3 42299645 42299645 A C CCK Missense_Mutation p.M98R 0.10 deleterious(0) possibly_damaging(0.841) TCGA-VQ-A8PP-01 3 44684824 44684824 C T ZNF197 Silent p.Y734Y 0.47 TCGA-VQ-A8PP-01 3 44700651 44700653 GTT - ZNF35 In_Frame_Del p.V267del 0.39 TCGA-VQ-A8PP-01 3 447317 447317 G A CHL1 Missense_Mutation p.A1200T 0.22 deleterious(0.04) probably_damaging(0.994) TCGA-VQ-A8PP-01 3 44844341 44844341 G A KIF15 Missense_Mutation p.M515I 0.27 tolerated(0.18) benign(0.023) TCGA-VQ-A8PP-01 3 45776776 45776776 G A SACM1L Missense_Mutation p.V384M 0.32 deleterious(0.01) possibly_damaging(0.828) TCGA-VQ-A8PP-01 3 46490479 46490479 G A LTF Missense_Mutation p.R363W 0.20 deleterious(0) possibly_damaging(0.685) TCGA-VQ-A8PP-01 3 46728539 46728539 C T ALS2CL Silent p.Q156Q 0.36 TCGA-VQ-A8PP-01 3 46939644 46939644 G A PTH1R Missense_Mutation p.E169K 0.31 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8PP-01 3 47361197 47361197 T C KLHL18 Missense_Mutation p.Y62H 0.34 deleterious(0) probably_damaging(1) TCGA-VQ-A8PP-01 3 47467522 47467522 T C SCAP Missense_Mutation p.Y292C 0.23 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PP-01 3 4776946 4776946 G A ITPR1 Missense_Mutation p.D1803N 0.47 tolerated(0.09) probably_damaging(0.995) TCGA-VQ-A8PP-01 3 48627961 48627961 G A COL7A1 Nonsense_Mutation p.R613* 0.18 TCGA-VQ-A8PP-01 3 49156610 49156610 C T USP19 5'UTR 0.20 TCGA-VQ-A8PP-01 3 49158766 49158766 G A LAMB2 Missense_Mutation p.R1764W 0.31 deleterious(0) probably_damaging(0.993) TCGA-VQ-A8PP-01 3 49693492 49693492 G A BSN Missense_Mutation p.G2168E 0.23 unknown(0) TCGA-VQ-A8PP-01 3 49940961 49940961 G A MST1R Nonsense_Mutation p.Q28* 0.38 TCGA-VQ-A8PP-01 3 50099449 50099450 - A RBM6 Frame_Shift_Ins p.P835Tfs*9 0.28 TCGA-VQ-A8PP-01 3 50129621 50129621 C T RBM5 Nonsense_Mutation p.R55* 0.21 TCGA-VQ-A8PP-01 3 50131238 50131238 A C RBM5 Missense_Mutation p.D90A 0.20 deleterious(0.01) probably_damaging(0.979) TCGA-VQ-A8PP-01 3 50392749 50392749 G C TMEM115 3'UTR 0.36 TCGA-VQ-A8PP-01 3 51196714 51196714 G A DOCK3 Missense_Mutation p.V290I 0.25 tolerated(0.08) benign(0.204) TCGA-VQ-A8PP-01 3 52256058 52256058 G A TLR9 Silent p.S912S 0.28 TCGA-VQ-A8PP-01 3 52407004 52407004 A G DNAH1 Missense_Mutation p.Q2307R 0.29 probably_damaging(0.999) TCGA-VQ-A8PP-01 3 52485772 52485772 C T TNNC1 Missense_Mutation p.R102H 0.27 deleterious(0.03) benign(0.156) TCGA-VQ-A8PP-01 3 52526469 52526469 C T NISCH Missense_Mutation p.R1496C 0.25 deleterious(0) probably_damaging(0.973) TCGA-VQ-A8PP-01 3 52745731 52745731 T - NEK4 3'UTR 0.20 TCGA-VQ-A8PP-01 3 54676213 54676213 G A CACNA2D3 Missense_Mutation p.G371E 0.40 deleterious(0) probably_damaging(1) TCGA-VQ-A8PP-01 3 56653371 56653371 A - CCDC66 Frame_Shift_Del p.N819Tfs*9 0.24 TCGA-VQ-A8PP-01 3 56763481 56763481 C T ARHGEF3 Silent p.S498S 0.21 TCGA-VQ-A8PP-01 3 57542766 57542766 A G PDE12 Silent p.S220S 0.34 TCGA-VQ-A8PP-01 3 58186752 58186752 G A DNASE1L3 Missense_Mutation p.T173M 0.37 tolerated(0.52) benign(0.005) TCGA-VQ-A8PP-01 3 58395861 58395861 G A PXK Silent p.A480A 0.27 TCGA-VQ-A8PP-01 3 62356997 62356997 C T FEZF2 Missense_Mutation p.G339S 0.26 deleterious(0.01) probably_damaging(0.983) TCGA-VQ-A8PP-01 3 71821968 71821968 A - PROK2 Frame_Shift_Del p.F99Lfs*28 0.29 TCGA-VQ-A8PP-01 3 77693995 77693995 G A ROBO2 Missense_Mutation p.D1375N 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.555) TCGA-VQ-A8PP-01 3 78666849 78666849 T C ROBO1 Silent p.A1406A 0.24 TCGA-VQ-A8PP-01 3 8668006 8668006 A G SSUH2 Missense_Mutation p.C226R 0.24 deleterious(0) probably_damaging(1) TCGA-VQ-A8PP-01 3 89498525 89498528 GTAA - EPHA3 Splice_Site p.X832_splice 0.21 TCGA-VQ-A8PP-01 3 89521668 89521668 A G EPHA3 Silent p.T915T 0.23 TCGA-VQ-A8PP-01 3 93646126 93646128 CTT - PROS1 In_Frame_Del p.E67del 0.25 TCGA-VQ-A8PP-01 3 97983205 97983205 C T OR5H6 Missense_Mutation p.T26I 0.35 deleterious(0.04) benign(0.178) TCGA-VQ-A8PP-01 3 98002620 98002620 C T OR5H2 Silent p.L297L 0.24 TCGA-VQ-A8PP-01 3 9822041 9822041 C T TADA3 Silent p.%3D 0.18 TCGA-VQ-A8PP-01 3 98299469 98299469 G T CPOX 3'UTR 0.37 TCGA-VQ-A8PP-01 3 99513512 99513512 C A COL8A1 Missense_Mutation p.P256H 0.20 tolerated(0.46) unknown(0) TCGA-VQ-A8PP-01 3 99568502 99568502 A - FILIP1L Frame_Shift_Del p.L673Yfs*5 0.34 TCGA-VQ-A8PP-01 4 103553415 103553415 G A MANBA Silent p.D813D 0.30 TCGA-VQ-A8PP-01 4 104030036 104030036 A - CENPE Frame_Shift_Del p.F2645Lfs*22 0.22 TCGA-VQ-A8PP-01 4 104037822 104037822 G A CENPE Missense_Mutation p.P2452S 0.29 probably_damaging(0.991) TCGA-VQ-A8PP-01 4 107956612 107956612 G A DKK2 Missense_Mutation p.T46M 0.37 tolerated(0.05) possibly_damaging(0.551) TCGA-VQ-A8PP-01 4 109576757 109576757 C T OSTC Silent p.V59V 0.33 TCGA-VQ-A8PP-01 4 110737493 110737493 T G GAR1 Missense_Mutation p.F58C 0.21 deleterious_low_confidence(0.01) unknown(0) TCGA-VQ-A8PP-01 4 119952573 119952573 G A SYNPO2 Silent p.S881S 0.20 TCGA-VQ-A8PP-01 4 123856959 123856959 C T SPATA5 Missense_Mutation p.A413V 0.26 tolerated(0.07) probably_damaging(0.952) TCGA-VQ-A8PP-01 4 126355434 126355434 C T FAT4 Silent p.N2351N 0.25 TCGA-VQ-A8PP-01 4 126389896 126389896 T C FAT4 Silent p.S4043S 0.37 TCGA-VQ-A8PP-01 4 129043420 129043420 T C LARP1B Intron 0.25 TCGA-VQ-A8PP-01 4 130023833 130023833 T C C4orf33 Missense_Mutation p.L23P 0.34 deleterious(0) probably_damaging(0.986) TCGA-VQ-A8PP-01 4 130032869 130032869 A C C4orf33 Missense_Mutation p.N175H 0.23 tolerated(0.09) benign(0.404) TCGA-VQ-A8PP-01 4 140375338 140375338 C T RAB33B 5'UTR 0.43 TCGA-VQ-A8PP-01 4 141313502 141313502 T - CLGN Frame_Shift_Del p.T508Pfs*12 0.17 TCGA-VQ-A8PP-01 4 142150775 142150775 T C ZNF330 Silent p.C114C 0.07 TCGA-VQ-A8PP-01 4 145567783 145567783 C - HHIP 5'UTR 0.28 TCGA-VQ-A8PP-01 4 15063789 15063789 G T CPEB2 Missense_Mutation p.G928C 0.31 deleterious_low_confidence(0) probably_damaging(1) TCGA-VQ-A8PP-01 4 151504197 151504197 G A MAB21L2 Missense_Mutation p.A6T 0.24 tolerated(0.3) benign(0.003) TCGA-VQ-A8PP-01 4 154216959 154216959 C T TRIM2 Silent p.D427D 0.31 TCGA-VQ-A8PP-01 4 156632369 156632369 G T GUCY1A3 Missense_Mutation p.R351M 0.22 deleterious(0) possibly_damaging(0.89) TCGA-VQ-A8PP-01 4 15964615 15964615 A G FGFBP2 Silent p.R46R 0.34 TCGA-VQ-A8PP-01 4 167810308 167810308 T C SPOCK3 Missense_Mutation p.T191A 0.24 tolerated(0.38) benign(0.002) TCGA-VQ-A8PP-01 4 170190046 170190046 A C SH3RF1 Missense_Mutation p.N106K 0.39 tolerated(0.52) benign(0.169) TCGA-VQ-A8PP-01 4 170613460 170613460 A - CLCN3 Frame_Shift_Del p.R311Gfs*14 0.18 TCGA-VQ-A8PP-01 4 170912486 170912486 A C MFAP3L 3'UTR 0.18 TCGA-VQ-A8PP-01 4 175898547 175898547 A T ADAM29 Missense_Mutation p.N624I 0.34 deleterious(0.01) benign(0.042) TCGA-VQ-A8PP-01 4 17608553 17608553 A G LAP3 Silent p.G454G 0.26 TCGA-VQ-A8PP-01 4 1803651 1803651 G A FGFR3 Missense_Mutation p.V277M 0.23 deleterious(0.01) probably_damaging(0.984) TCGA-VQ-A8PP-01 4 183664473 183664473 C T TENM3 Missense_Mutation p.A1177V 0.30 deleterious(0) benign(0.003) TCGA-VQ-A8PP-01 4 183814185 183814185 G A DCTD Missense_Mutation p.R164W 0.20 deleterious(0.03) benign(0.047) TCGA-VQ-A8PP-01 4 185638291 185638291 T - CENPU Frame_Shift_Del p.K127Sfs*31 0.19 TCGA-VQ-A8PP-01 4 185652115 185652115 G A CENPU Missense_Mutation p.R19C 0.22 tolerated(0.16) unknown(0) TCGA-VQ-A8PP-01 4 186112045 186112045 T - KIAA1430 Frame_Shift_Del p.K102Nfs*23 0.35 TCGA-VQ-A8PP-01 4 187172954 187172954 G A KLKB1 Silent p.A361A 0.20 TCGA-VQ-A8PP-01 4 187541743 187541743 A G FAT1 Silent p.A1999A 0.27 TCGA-VQ-A8PP-01 4 25278792 25278792 T - PI4K2B Frame_Shift_Del p.S479Pfs*40 0.19 TCGA-VQ-A8PP-01 4 26432104 26432104 C T RBPJ Nonsense_Mutation p.R383* 0.18 TCGA-VQ-A8PP-01 4 26483251 26483251 G - CCKAR 3'UTR 0.23 TCGA-VQ-A8PP-01 4 2648523 2648523 G T FAM193A Missense_Mutation p.E134D 0.33 tolerated(0.2) possibly_damaging(0.717) TCGA-VQ-A8PP-01 4 27010126 27010126 T C STIM2 Missense_Mutation p.V417A 0.34 deleterious(0) probably_damaging(0.986) TCGA-VQ-A8PP-01 4 2733747 2733747 C T FAM193A 3'UTR 0.38 TCGA-VQ-A8PP-01 4 30724650 30724650 G A PCDH7 Missense_Mutation p.G536S 0.07 tolerated(1) benign(0.004) TCGA-VQ-A8PP-01 4 3372018 3372018 A G RGS12 Intron 0.29 TCGA-VQ-A8PP-01 4 3443797 3443797 C G HGFAC Silent p.L23L 0.25 TCGA-VQ-A8PP-01 4 39217621 39217621 C T WDR19 Silent p.N374N 0.30 TCGA-VQ-A8PP-01 4 3945018 3945018 A G FAM86EP RNA 0.17 TCGA-VQ-A8PP-01 4 40045302 40045302 G T RP11-333E13.4 RNA 0.29 TCGA-VQ-A8PP-01 4 41621389 41621390 AG - LIMCH1 Frame_Shift_Del p.E292Gfs*29 0.13 TCGA-VQ-A8PP-01 4 42964937 42964937 G - GRXCR1 Frame_Shift_Del p.R138Lfs*2 0.13 TCGA-VQ-A8PP-01 4 44637973 44637973 A G YIPF7 Silent p.I106I 0.36 TCGA-VQ-A8PP-01 4 44713062 44713062 A G GNPDA2 Silent p.L168L 0.21 TCGA-VQ-A8PP-01 4 4864438 4864438 C - MSX1 Frame_Shift_Del p.P162Qfs*55 0.22 TCGA-VQ-A8PP-01 4 48993552 48993552 T C CWH43 Missense_Mutation p.V106A 0.22 tolerated(0.17) benign(0.109) TCGA-VQ-A8PP-01 4 52861876 52861876 G T LRRC66 Missense_Mutation p.P438T 0.15 deleterious(0.04) possibly_damaging(0.677) TCGA-VQ-A8PP-01 4 52943007 52943007 C A SPATA18 Missense_Mutation p.S274Y 0.17 deleterious(0.01) possibly_damaging(0.775) TCGA-VQ-A8PP-01 4 53728623 53728623 G A RASL11B 5'UTR 0.36 TCGA-VQ-A8PP-01 4 54966624 54966624 C T GSX2 Missense_Mutation p.P38L 0.09 deleterious(0.04) benign(0.243) TCGA-VQ-A8PP-01 4 56316282 56316282 G A CLOCK Missense_Mutation p.H442Y 0.19 deleterious(0.05) possibly_damaging(0.791) TCGA-VQ-A8PP-01 4 56830519 56830519 A G CEP135 Missense_Mutation p.E260G 0.32 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PP-01 4 5755644 5755644 C T EVC Missense_Mutation p.P483L 0.32 tolerated(0.36) probably_damaging(0.946) TCGA-VQ-A8PP-01 4 619571 619571 G A PDE6B Silent p.Q52Q 0.26 TCGA-VQ-A8PP-01 4 6325280 6325280 A G PPP2R2C Missense_Mutation p.F365L 0.35 deleterious(0.02) benign(0.347) TCGA-VQ-A8PP-01 4 66467437 66467437 C T EPHA5 Missense_Mutation p.A278T 0.28 tolerated(0.16) benign(0.013) TCGA-VQ-A8PP-01 4 68499072 68499072 A - UBA6 Frame_Shift_Del p.F711Lfs*18 0.21 TCGA-VQ-A8PP-01 4 68539427 68539427 G A UBA6 Silent p.C178C 0.17 TCGA-VQ-A8PP-01 4 68699032 68699032 C A TMPRSS11D Missense_Mutation p.E194D 0.25 tolerated(0.07) benign(0.005) TCGA-VQ-A8PP-01 4 69180041 69180041 G A YTHDC1 Missense_Mutation p.H654Y 0.23 tolerated_low_confidence(0.11) benign(0.346) TCGA-VQ-A8PP-01 4 74442350 74442350 C T RASSF6 Missense_Mutation p.A306T 0.29 tolerated(0.29) benign(0.07) TCGA-VQ-A8PP-01 4 74606374 74606374 A G IL8 5'UTR 0.33 TCGA-VQ-A8PP-01 4 76442067 76442067 A - THAP6 Frame_Shift_Del p.G58Efs*23 0.22 TCGA-VQ-A8PP-01 4 76811174 76811174 C T PPEF2 Missense_Mutation p.R118H 0.32 tolerated(0.53) benign(0.026) TCGA-VQ-A8PP-01 4 79284696 79284696 G T FRAS1 Missense_Mutation p.A818S 0.17 probably_damaging(0.968) TCGA-VQ-A8PP-01 4 88533667 88533667 A T DSPP Missense_Mutation p.N110I 0.35 probably_damaging(0.987) TCGA-VQ-A8PP-01 4 88767526 88767526 T C MEPE Silent p.F502F 0.31 TCGA-VQ-A8PP-01 4 88996917 88996917 A G PKD2 3'UTR 0.31 TCGA-VQ-A8PP-01 4 89407334 89407334 T - HERC5 Frame_Shift_Del p.F604Lfs*2 0.19 TCGA-VQ-A8PP-01 4 90034644 90034644 T G TIGD2 Missense_Mutation p.I173M 0.25 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8PP-01 4 94750382 94750382 G - ATOH1 Frame_Shift_Del p.E104Sfs*3 0.22 TCGA-VQ-A8PP-01 4 95496980 95496980 G A PDLIM5 Intron 0.27 TCGA-VQ-A8PP-01 4 955817 955817 C A DGKQ Silent p.L756L 0.23 TCGA-VQ-A8PP-01 4 96052550 96052550 T C BMPR1B Silent p.S351S 0.30 TCGA-VQ-A8PP-01 4 96469989 96469989 G A UNC5C Missense_Mutation p.A7V 0.26 tolerated_low_confidence(0.08) benign(0.003) TCGA-VQ-A8PP-01 5 101724504 101724504 A G SLCO6A1 Silent p.F635F 0.33 TCGA-VQ-A8PP-01 5 101748695 101748695 T - SLCO6A1 Frame_Shift_Del p.K542Rfs*13 0.25 TCGA-VQ-A8PP-01 5 112222774 112222774 T A REEP5 Missense_Mutation p.D153V 0.13 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PP-01 5 114513556 114513556 C T TRIM36 Intron 0.26 TCGA-VQ-A8PP-01 5 115298427 115298427 G A AQPEP Missense_Mutation p.G38D 0.24 deleterious(0.01) probably_damaging(0.938) TCGA-VQ-A8PP-01 5 125968338 125968338 A G C5orf48 Missense_Mutation p.N63D 0.29 tolerated(0.2) possibly_damaging(0.883) TCGA-VQ-A8PP-01 5 127595185 127595185 C - FBN2 Frame_Shift_Del p.E2901Rfs*5 0.15 TCGA-VQ-A8PP-01 5 127610359 127610359 T C FBN2 Silent p.Q2537Q 0.07 TCGA-VQ-A8PP-01 5 135207205 135207205 G - SLC25A48 Intron 0.18 TCGA-VQ-A8PP-01 5 13701432 13701432 A C DNAH5 Silent p.G4484G 0.25 TCGA-VQ-A8PP-01 5 137230127 137230127 G A PKD2L2 Missense_Mutation p.R118H 0.07 tolerated(0.41) benign(0.019) TCGA-VQ-A8PP-01 5 137426942 137426942 G T WNT8A 3'UTR 0.26 TCGA-VQ-A8PP-01 5 137533898 137533898 G T CDC23 Nonsense_Mutation p.C334* 0.05 TCGA-VQ-A8PP-01 5 137715352 137715352 C T KDM3B Silent p.S220S 0.06 TCGA-VQ-A8PP-01 5 13788970 13788970 G A DNAH5 Silent p.F2834F 0.27 TCGA-VQ-A8PP-01 5 139422277 139422277 C A NRG2 Missense_Mutation p.K126N 0.55 deleterious(0) possibly_damaging(0.864) TCGA-VQ-A8PP-01 5 139574220 139574220 A C CYSTM1 Missense_Mutation p.E57A 0.15 tolerated_low_confidence(0.1) unknown(0) TCGA-VQ-A8PP-01 5 139917038 139917038 A G ANKHD1 Missense_Mutation p.I2364M 0.19 possibly_damaging(0.849) TCGA-VQ-A8PP-01 5 140203767 140203767 T C PCDHA5 Intron 0.26 TCGA-VQ-A8PP-01 5 140207781 140207781 A C PCDHA6 Silent p.V35V 0.26 TCGA-VQ-A8PP-01 5 140214396 140214396 C T PCDHA7 Missense_Mutation p.A143V 0.16 tolerated_low_confidence(0.17) benign(0.097) TCGA-VQ-A8PP-01 5 140228508 140228508 C T PCDHA9 Missense_Mutation p.A143V 0.08 tolerated_low_confidence(0.18) possibly_damaging(0.61) TCGA-VQ-A8PP-01 5 140250189 140250189 C A PCDHA11 Missense_Mutation p.R501S 0.25 deleterious_low_confidence(0) benign(0.374) TCGA-VQ-A8PP-01 5 140263283 140263283 T C PCDHA13 Missense_Mutation p.V477A 0.26 deleterious_low_confidence(0) probably_damaging(0.967) TCGA-VQ-A8PP-01 5 140503287 140503287 G A PCDHB4 Silent p.A569A 0.12 TCGA-VQ-A8PP-01 5 140516544 140516544 G A PCDHB5 Missense_Mutation p.G510S 0.29 deleterious_low_confidence(0) probably_damaging(0.975) TCGA-VQ-A8PP-01 5 140531213 140531213 C T PCDHB6 Missense_Mutation p.R459C 0.19 deleterious_low_confidence(0.01) benign(0.04) TCGA-VQ-A8PP-01 5 140553212 140553212 G T PCDHB7 Missense_Mutation p.A266S 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.858) TCGA-VQ-A8PP-01 5 140553626 140553626 G A PCDHB7 Missense_Mutation p.V404I 0.24 tolerated_low_confidence(0.08) benign(0.067) TCGA-VQ-A8PP-01 5 140554319 140554319 G A PCDHB7 Missense_Mutation p.A635T 0.10 deleterious_low_confidence(0.03) benign(0.372) TCGA-VQ-A8PP-01 5 140562601 140562601 A G PCDHB16 Missense_Mutation p.H156R 0.31 tolerated_low_confidence(0.77) benign(0.04) TCGA-VQ-A8PP-01 5 140579664 140579664 T C PCDHB11 Missense_Mutation p.L106S 0.25 deleterious_low_confidence(0) benign(0.063) TCGA-VQ-A8PP-01 5 140581425 140581425 C T PCDHB11 Missense_Mutation p.A693V 0.28 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-VQ-A8PP-01 5 140590345 140590345 C T PCDHB12 Silent p.G622G 0.16 TCGA-VQ-A8PP-01 5 140745619 140745619 C T PCDHGA5 Silent p.G574G 0.26 TCGA-VQ-A8PP-01 5 140763254 140763254 C T PCDHGA7 Missense_Mutation p.T263M 0.22 tolerated_low_confidence(0.07) benign(0.305) TCGA-VQ-A8PP-01 5 140769181 140769181 C T PCDHGB4 Missense_Mutation p.P577L 0.41 deleterious(0) probably_damaging(1) TCGA-VQ-A8PP-01 5 140807589 140807589 G A PCDHGB6 Intron 0.22 TCGA-VQ-A8PP-01 5 140811521 140811521 G A PCDHGA12 Missense_Mutation p.G399R 0.14 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-VQ-A8PP-01 5 141358334 141358334 G A RNF14 Missense_Mutation p.G258D 0.05 deleterious(0) probably_damaging(0.962) TCGA-VQ-A8PP-01 5 141381600 141381600 G A GNPDA1 Silent p.S288S 0.19 TCGA-VQ-A8PP-01 5 143853687 143853687 G - KCTD16 3'UTR 0.15 TCGA-VQ-A8PP-01 5 145838692 145838692 G T TCERG1 Missense_Mutation p.Q228H 0.16 tolerated_low_confidence(0.36) unknown(0) TCGA-VQ-A8PP-01 5 146775241 146775241 G A DPYSL3 Missense_Mutation p.P616L 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-VQ-A8PP-01 5 148406814 148406814 C A SH3TC2 Missense_Mutation p.K827N 0.27 tolerated(0.32) benign(0.004) TCGA-VQ-A8PP-01 5 148407274 148407274 C T SH3TC2 Missense_Mutation p.S674N 0.32 tolerated(0.19) benign(0.001) TCGA-VQ-A8PP-01 5 149212258 149212258 T C PPARGC1B Missense_Mutation p.S208P 0.28 tolerated(1) benign(0) TCGA-VQ-A8PP-01 5 149583250 149583250 G A SLC6A7 Missense_Mutation p.V370I 0.20 deleterious(0.02) probably_damaging(0.959) TCGA-VQ-A8PP-01 5 150444639 150444639 C T TNIP1 Silent p.P6P 0.47 TCGA-VQ-A8PP-01 5 150844159 150844159 C T SLC36A1 Missense_Mutation p.R107C 0.34 deleterious(0.02) benign(0.005) TCGA-VQ-A8PP-01 5 150924793 150924793 G A FAT2 Silent p.S1965S 0.25 TCGA-VQ-A8PP-01 5 151051150 151051150 A G SPARC Missense_Mutation p.I105T 0.29 tolerated(1) benign(0.002) TCGA-VQ-A8PP-01 5 156915484 156915484 G A ADAM19 Missense_Mutation p.P780L 0.32 deleterious(0.02) benign(0.201) TCGA-VQ-A8PP-01 5 157216445 157216445 A G CLINT1 Missense_Mutation p.L504P 0.28 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PP-01 5 159520828 159520828 A G PWWP2A Missense_Mutation p.F277L 0.21 deleterious(0.04) benign(0.168) TCGA-VQ-A8PP-01 5 159776301 159776301 A G C1QTNF2 Silent p.G289G 0.19 TCGA-VQ-A8PP-01 5 160115094 160115094 G A ATP10B 5'UTR 0.30 TCGA-VQ-A8PP-01 5 16673840 16673840 C T MYO10 Missense_Mutation p.G1708D 0.22 tolerated(0.17) probably_damaging(0.999) TCGA-VQ-A8PP-01 5 167687391 167687391 A G TENM2 Silent p.S2512S 0.27 TCGA-VQ-A8PP-01 5 168199795 168199795 G A SLIT3 Missense_Mutation p.R484C 0.22 deleterious(0) probably_damaging(0.993) TCGA-VQ-A8PP-01 5 169535156 169535156 A G FOXI1 Silent p.T226T 0.31 TCGA-VQ-A8PP-01 5 176026665 176026665 G - GPRIN1 Frame_Shift_Del p.R58Gfs*78 0.35 TCGA-VQ-A8PP-01 5 176778503 176778503 C T LMAN2 Missense_Mutation p.G49D 0.27 tolerated(0.24) probably_damaging(0.999) TCGA-VQ-A8PP-01 5 176899146 176899146 G A DBN1 Silent p.R22R 0.42 TCGA-VQ-A8PP-01 5 178559313 178559313 T - ADAMTS2 Splice_Site p.X737_splice 0.30 TCGA-VQ-A8PP-01 5 179136878 179136878 A G CANX Missense_Mutation p.Q178R 0.22 tolerated(0.21) benign(0.113) TCGA-VQ-A8PP-01 5 179136964 179136964 A - CANX Frame_Shift_Del p.N208Tfs*19 0.24 TCGA-VQ-A8PP-01 5 179252155 179252155 C T SQSTM1 Missense_Mutation p.P228L 0.28 deleterious(0.02) benign(0.066) TCGA-VQ-A8PP-01 5 180048063 180048063 G A FLT4 Intron 0.26 TCGA-VQ-A8PP-01 5 180432716 180432716 T C BTNL3 Silent p.G415G 0.11 TCGA-VQ-A8PP-01 5 180486732 180486732 G A BTNL9 Missense_Mutation p.G493D 0.15 tolerated(0.11) probably_damaging(0.994) TCGA-VQ-A8PP-01 5 240566 240566 C T SDHA Missense_Mutation p.S509L 0.23 deleterious_low_confidence(0) benign(0.144) TCGA-VQ-A8PP-01 5 31421450 31421450 A C DROSHA Missense_Mutation p.S1152A 0.27 tolerated(0.16) benign(0.193) TCGA-VQ-A8PP-01 5 31504699 31504699 C T DROSHA Missense_Mutation p.R544H 0.30 deleterious(0) possibly_damaging(0.858) TCGA-VQ-A8PP-01 5 33938153 33938153 G A RXFP3 Silent p.P436P 0.26 TCGA-VQ-A8PP-01 5 33997426 33997426 T C AMACR Intron 0.06 TCGA-VQ-A8PP-01 5 34945040 34945040 A C DNAJC21 Missense_Mutation p.E351A 0.41 tolerated(0.14) benign(0.119) TCGA-VQ-A8PP-01 5 37183733 37183733 T G C5orf42 Missense_Mutation p.Q1517P 0.27 tolerated(0.17) benign(0.009) TCGA-VQ-A8PP-01 5 37605259 37605259 G A WDR70 Silent p.T337T 0.38 TCGA-VQ-A8PP-01 5 38370408 38370408 G A EGFLAM Missense_Mutation p.D186N 0.22 deleterious_low_confidence(0.05) possibly_damaging(0.905) TCGA-VQ-A8PP-01 5 38959928 38959928 G A RICTOR Silent p.C668C 0.22 TCGA-VQ-A8PP-01 5 41058239 41058239 C T MROH2B Missense_Mutation p.G228R 0.22 deleterious(0) benign(0.038) TCGA-VQ-A8PP-01 5 41201722 41201723 - G C6 Frame_Shift_Ins p.I80Hfs*15 0.24 TCGA-VQ-A8PP-01 5 41927331 41927331 T - FBXO4 Frame_Shift_Del p.F137Lfs*35 0.14 TCGA-VQ-A8PP-01 5 52338032 52338032 T C ITGA2 Silent p.C92C 0.07 TCGA-VQ-A8PP-01 5 5457519 5457519 C A KIAA0947 Missense_Mutation p.P256T 0.35 deleterious(0.01) possibly_damaging(0.908) TCGA-VQ-A8PP-01 5 56778292 56778292 G A ACTBL2 Silent p.D81D 0.33 TCGA-VQ-A8PP-01 5 57753012 57753012 A - PLK2 Frame_Shift_Del p.L335Cfs*68 0.28 TCGA-VQ-A8PP-01 5 57753124 57753124 T C PLK2 Missense_Mutation p.T298A 0.27 tolerated(0.15) benign(0.07) TCGA-VQ-A8PP-01 5 58270532 58270532 G A PDE4D Missense_Mutation p.P797S 0.28 tolerated_low_confidence(0.24) possibly_damaging(0.641) TCGA-VQ-A8PP-01 5 59064425 59064425 T C PDE4D Intron 0.30 TCGA-VQ-A8PP-01 5 65374370 65374370 A - ERBB2IP 3'UTR 0.28 TCGA-VQ-A8PP-01 5 70858278 70858278 C A BDP1 Silent p.S2558S 0.35 TCGA-VQ-A8PP-01 5 79031144 79031144 T - CMYA5 Frame_Shift_Del p.F2187Lfs*16 0.19 TCGA-VQ-A8PP-01 5 79739053 79739053 C A ZFYVE16 Missense_Mutation p.P844H 0.28 deleterious(0) possibly_damaging(0.681) TCGA-VQ-A8PP-01 5 80600794 80600794 A G ZCCHC9 Missense_Mutation p.N73S 0.10 deleterious(0.01) probably_damaging(0.936) TCGA-VQ-A8PP-01 5 82817954 82817955 AG - VCAN Frame_Shift_Del p.E1278Vfs*43 0.25 TCGA-VQ-A8PP-01 5 86672331 86672331 A C RASA1 Silent p.R711R 0.33 TCGA-VQ-A8PP-01 5 90107010 90107010 A C GPR98 Missense_Mutation p.K5311N 0.15 benign(0.009) TCGA-VQ-A8PP-01 5 95124510 95124510 T C RHOBTB3 Silent p.I556I 0.39 TCGA-VQ-A8PP-01 5 98236745 98236745 T - CHD1 Frame_Shift_Del p.K210Rfs*39 0.19 TCGA-VQ-A8PP-01 6 10398587 10398587 C T TFAP2A 3'UTR 0.17 TCGA-VQ-A8PP-01 6 10411821 10411821 A G TFAP2A Intron 0.32 TCGA-VQ-A8PP-01 6 108582064 108582064 G T SNX3 Missense_Mutation p.A21D 0.10 deleterious(0.04) probably_damaging(0.938) TCGA-VQ-A8PP-01 6 111689017 111689017 T - REV3L Frame_Shift_Del p.I1992Lfs*2 0.25 TCGA-VQ-A8PP-01 6 116988051 116988051 T - ZUFSP Frame_Shift_Del p.N102Ifs*6 0.18 TCGA-VQ-A8PP-01 6 117622148 117622148 T C ROS1 Missense_Mutation p.E2241G 0.30 deleterious(0.02) benign(0.069) TCGA-VQ-A8PP-01 6 121768438 121768438 G - GJA1 Frame_Shift_Del p.L151Cfs*21 0.23 TCGA-VQ-A8PP-01 6 123319065 123319065 G A CLVS2 Missense_Mutation p.R48H 0.23 tolerated(0.08) possibly_damaging(0.581) TCGA-VQ-A8PP-01 6 125284072 125284072 C - RP11-510H23.1 RNA 0.27 TCGA-VQ-A8PP-01 6 126075671 126075671 C T HEY2 Missense_Mutation p.L103F 0.19 deleterious(0) probably_damaging(0.989) TCGA-VQ-A8PP-01 6 127768207 127768207 A G KIAA0408 Silent p.S419S 0.21 TCGA-VQ-A8PP-01 6 128388884 128388884 G A PTPRK Missense_Mutation p.A646V 0.31 tolerated(0.12) benign(0.266) TCGA-VQ-A8PP-01 6 129573375 129573375 G A LAMA2 Silent p.V677V 0.31 TCGA-VQ-A8PP-01 6 1313428 1313428 G A FOXQ1 Nonsense_Mutation p.W163* 0.08 TCGA-VQ-A8PP-01 6 133045980 133045980 G A VNN3 3'UTR 0.15 TCGA-VQ-A8PP-01 6 135318743 135318743 C T HBS1L Silent p.P197P 0.33 TCGA-VQ-A8PP-01 6 136560647 136560647 C T MTFR2 Missense_Mutation p.V276I 0.23 deleterious(0.04) possibly_damaging(0.456) TCGA-VQ-A8PP-01 6 138628396 138628396 A G KIAA1244 Missense_Mutation p.T1279A 0.13 tolerated(0.27) probably_damaging(0.965) TCGA-VQ-A8PP-01 6 13977168 13977168 G A RNF182 5'UTR 0.44 TCGA-VQ-A8PP-01 6 144782471 144782471 A - UTRN Frame_Shift_Del p.K951Rfs*32 0.26 TCGA-VQ-A8PP-01 6 145161947 145161947 A G UTRN Missense_Mutation p.S3417G 0.19 deleterious(0.01) benign(0.217) TCGA-VQ-A8PP-01 6 146276182 146276182 A - SHPRH Frame_Shift_Del p.S93Pfs*5 0.21 TCGA-VQ-A8PP-01 6 149395060 149395060 C T UST Silent p.Y343Y 0.31 TCGA-VQ-A8PP-01 6 151789755 151789756 - T C6orf211 Frame_Shift_Ins p.Y281Lfs*11 0.11 TCGA-VQ-A8PP-01 6 152651397 152651397 G A SYNE1 Missense_Mutation p.T4808M 0.18 benign(0.341) TCGA-VQ-A8PP-01 6 152738021 152738021 G A SYNE1 Nonsense_Mutation p.Q1851* 0.36 TCGA-VQ-A8PP-01 6 152783845 152783845 T - SYNE1 Intron 0.13 TCGA-VQ-A8PP-01 6 155450851 155450851 C T TIAM2 Missense_Mutation p.T165M 0.40 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-VQ-A8PP-01 6 157527756 157527756 C T ARID1B Silent p.T1827T 0.35 TCGA-VQ-A8PP-01 6 158363937 158363937 T - SNX9 3'UTR 0.20 TCGA-VQ-A8PP-01 6 158476062 158476062 T C SYNJ2 Splice_Site p.X286_splice 0.26 TCGA-VQ-A8PP-01 6 158508008 158508009 - C SYNJ2 Frame_Shift_Ins p.P1114Sfs*48 0.35 TCGA-VQ-A8PP-01 6 159185685 159185685 G A SYTL3 3'UTR 0.31 TCGA-VQ-A8PP-01 6 160517607 160517607 C T IGF2R Silent p.A2264A 0.31 TCGA-VQ-A8PP-01 6 16141872 16141872 C T MYLIP Missense_Mutation p.H99Y 0.08 deleterious(0) probably_damaging(0.958) TCGA-VQ-A8PP-01 6 16306836 16306836 G A ATXN1 Silent p.A724A 0.31 TCGA-VQ-A8PP-01 6 16328552 16328552 C - ATXN1 5'UTR 0.27 TCGA-VQ-A8PP-01 6 165848843 165848843 G T PDE10A Missense_Mutation p.P140H 0.26 tolerated(0.31) possibly_damaging(0.868) TCGA-VQ-A8PP-01 6 166576077 166576077 C T T Silent p.L254L 0.14 TCGA-VQ-A8PP-01 6 169637277 169637277 C T THBS2 Missense_Mutation p.A489T 0.30 tolerated(0.58) benign(0.001) TCGA-VQ-A8PP-01 6 170104115 170104115 T - PHF10 Frame_Shift_Del p.N494Tfs*? 0.17 TCGA-VQ-A8PP-01 6 17616775 17616775 T C NUP153 Silent p.P1442P 0.28 TCGA-VQ-A8PP-01 6 17637707 17637707 C T NUP153 Missense_Mutation p.G714D 0.05 deleterious(0.01) probably_damaging(0.991) TCGA-VQ-A8PP-01 6 24701800 24701803 AATT - ACOT13 Frame_Shift_Del p.L128* 0.40 TCGA-VQ-A8PP-01 6 26056128 26056128 C T HIST1H1C Missense_Mutation p.A177T 0.20 tolerated(0.13) unknown(0) TCGA-VQ-A8PP-01 6 26158522 26158522 T C HIST1H2BD Missense_Mutation p.V42A 0.19 deleterious_low_confidence(0) benign(0.031) TCGA-VQ-A8PP-01 6 26240940 26240940 G A HIST1H4F Missense_Mutation p.R96H 0.32 tolerated(0.07) benign(0.075) TCGA-VQ-A8PP-01 6 28134569 28134569 G T ZNF192P1 RNA 0.18 TCGA-VQ-A8PP-01 6 28251806 28251806 G A PGBD1 Nonsense_Mutation p.W72* 0.29 TCGA-VQ-A8PP-01 6 28540067 28540067 C T SCAND3 Missense_Mutation p.R1200H 0.26 tolerated_low_confidence(0.1) possibly_damaging(0.482) TCGA-VQ-A8PP-01 6 28967278 28967278 T C ZNF311 Missense_Mutation p.N99S 0.21 deleterious(0.01) possibly_damaging(0.579) TCGA-VQ-A8PP-01 6 29323731 29323731 A G OR5V1 Missense_Mutation p.M81T 0.20 deleterious(0.01) probably_damaging(0.996) TCGA-VQ-A8PP-01 6 30166518 30166518 G A TRIM26 Silent p.C121C 0.11 TCGA-VQ-A8PP-01 6 30545672 30545672 G A ABCF1 Silent p.Q66Q 0.22 TCGA-VQ-A8PP-01 6 30596116 30596116 T C ATAT1 Missense_Mutation p.V137A 0.24 deleterious(0) possibly_damaging(0.885) TCGA-VQ-A8PP-01 6 31323362 31323363 - G HLA-B Frame_Shift_Ins p.T211Dfs*10 0.34 TCGA-VQ-A8PP-01 6 31560502 31560502 G A NCR3 5'UTR 0.35 TCGA-VQ-A8PP-01 6 31590581 31590581 G - PRRC2A Frame_Shift_Del p.P7Rfs*25 0.18 TCGA-VQ-A8PP-01 6 31669851 31669851 C T ABHD16A Silent p.L63L 0.23 TCGA-VQ-A8PP-01 6 31727632 31727632 T G MSH5 Missense_Mutation p.V522G 0.30 deleterious(0) probably_damaging(0.93) TCGA-VQ-A8PP-01 6 31785252 31785252 G T HSPA1A Missense_Mutation p.K573N 0.38 deleterious_low_confidence(0.02) possibly_damaging(0.887) TCGA-VQ-A8PP-01 6 31927079 31927079 C - SKIV2L Frame_Shift_Del p.P11Lfs*23 0.25 TCGA-VQ-A8PP-01 6 31930315 31930315 G A SKIV2L Silent p.Q388Q 0.31 TCGA-VQ-A8PP-01 6 32036432 32036432 G - TNXB Frame_Shift_Del p.I1986Sfs*8 0.27 TCGA-VQ-A8PP-01 6 32118254 32118254 G A PRRT1 Missense_Mutation p.T150M 0.44 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-VQ-A8PP-01 6 32334074 32334074 G A C6orf10 Nonsense_Mutation p.R58* 0.20 TCGA-VQ-A8PP-01 6 32411670 32411670 C T HLA-DRA Missense_Mutation p.R250C 0.33 tolerated(0.23) possibly_damaging(0.843) TCGA-VQ-A8PP-01 6 33555441 33555441 C T GGNBP1 Intron 0.10 TCGA-VQ-A8PP-01 6 33659396 33659396 C - ITPR3 Frame_Shift_Del p.L2412Wfs*48 0.36 TCGA-VQ-A8PP-01 6 33695968 33695968 C T IP6K3 Silent p.A103A 0.37 TCGA-VQ-A8PP-01 6 35438046 35438046 T C RPL10A Missense_Mutation p.F134S 0.14 deleterious(0.01) possibly_damaging(0.9) TCGA-VQ-A8PP-01 6 35443448 35443448 T C TEAD3 Silent p.G312G 0.23 TCGA-VQ-A8PP-01 6 35837659 35837659 G A SRPK1 Silent p.G337G 0.24 TCGA-VQ-A8PP-01 6 36651872 36651872 A G CDKN1A Splice_Site 0.19 TCGA-VQ-A8PP-01 6 3850837 3850837 G A FAM50B Silent p.P264P 0.33 TCGA-VQ-A8PP-01 6 38793988 38793988 C T DNAH8 Nonsense_Mutation p.R1085* 0.11 TCGA-VQ-A8PP-01 6 39272281 39272281 C - KCNK17 Frame_Shift_Del p.G168Afs*61 0.26 TCGA-VQ-A8PP-01 6 42689984 42689984 G A PRPH2 Missense_Mutation p.A30V 0.30 tolerated(0.23) benign(0.02) TCGA-VQ-A8PP-01 6 42933827 42933827 G A PEX6 Missense_Mutation p.L773F 0.21 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PP-01 6 42936035 42936035 G - PEX6 Frame_Shift_Del p.L561Sfs*58 0.21 TCGA-VQ-A8PP-01 6 43114422 43114422 A C PTK7 Missense_Mutation p.S911R 0.28 deleterious(0) possibly_damaging(0.673) TCGA-VQ-A8PP-01 6 43143586 43143586 C T SRF Missense_Mutation p.A308V 0.28 deleterious(0.01) benign(0.016) TCGA-VQ-A8PP-01 6 43167809 43167809 A G CUL9 Missense_Mutation p.E1100G 0.26 deleterious(0) benign(0.297) TCGA-VQ-A8PP-01 6 43487868 43487868 C G POLR1C Missense_Mutation p.N149K 0.31 tolerated(0.06) possibly_damaging(0.474) TCGA-VQ-A8PP-01 6 43592427 43592427 A G GTPBP2 Missense_Mutation p.L307P 0.27 deleterious(0) probably_damaging(0.988) TCGA-VQ-A8PP-01 6 43613044 43613044 C T RSPH9 Missense_Mutation p.P70L 0.29 tolerated(0.17) benign(0.087) TCGA-VQ-A8PP-01 6 44216478 44216478 A T HSP90AB1 Missense_Mutation p.I38F 0.31 deleterious(0) probably_damaging(0.994) TCGA-VQ-A8PP-01 6 46630156 46630156 T - SLC25A27 Frame_Shift_Del p.L144* 0.20 TCGA-VQ-A8PP-01 6 46630235 46630235 G A SLC25A27 Missense_Mutation p.R169Q 0.37 deleterious(0.03) probably_damaging(0.994) TCGA-VQ-A8PP-01 6 49427034 49427034 T - MUT Frame_Shift_Del p.K49Sfs*3 0.26 TCGA-VQ-A8PP-01 6 53785487 53785487 C T LRRC1 Silent p.N448N 0.26 TCGA-VQ-A8PP-01 6 599180 599180 C T EXOC2 Missense_Mutation p.R263Q 0.26 deleterious(0.02) possibly_damaging(0.885) TCGA-VQ-A8PP-01 6 63995531 63995531 G A LGSN Silent p.G97G 0.32 TCGA-VQ-A8PP-01 6 70951138 70951138 C T COL9A1 Missense_Mutation p.G673D 0.08 probably_damaging(1) TCGA-VQ-A8PP-01 6 71567701 71567701 C T SMAP1 Silent p.G346G 0.22 TCGA-VQ-A8PP-01 6 73904321 73904321 G T KCNQ5 Silent p.V680V 0.28 TCGA-VQ-A8PP-01 6 74351590 74351591 AA - SLC17A5 Frame_Shift_Del p.F116Lfs*78 0.27 TCGA-VQ-A8PP-01 6 74520848 74520848 G A CD109 Missense_Mutation p.R1227H 0.19 tolerated(0.28) benign(0.006) TCGA-VQ-A8PP-01 6 7727585 7727585 C T BMP6 Missense_Mutation p.P133S 0.27 deleterious(0) probably_damaging(1) TCGA-VQ-A8PP-01 6 89614561 89614561 G - RNGTT Frame_Shift_Del p.P186Hfs*41 0.19 TCGA-VQ-A8PP-01 6 93969194 93969194 T G EPHA7 Missense_Mutation p.K601T 0.22 tolerated(0.16) benign(0.093) TCGA-VQ-A8PP-01 6 97063614 97063614 A - FHL5 Frame_Shift_Del p.K275Nfs*18 0.20 TCGA-VQ-A8PP-01 7 100279995 100279995 T G GIGYF1 Missense_Mutation p.Q904P 0.30 deleterious(0.02) probably_damaging(0.943) TCGA-VQ-A8PP-01 7 100285875 100285875 G A GIGYF1 5'UTR 0.12 TCGA-VQ-A8PP-01 7 100866805 100866805 C T ZNHIT1 Nonsense_Mutation p.R81* 0.24 TCGA-VQ-A8PP-01 7 101926027 101926027 C T SH2B2 5'Flank 0.29 TCGA-VQ-A8PP-01 7 103244821 103244821 G A RELN Missense_Mutation p.H1040Y 0.32 deleterious(0) possibly_damaging(0.842) TCGA-VQ-A8PP-01 7 105148864 105148864 T - PUS7 Frame_Shift_Del p.K32Nfs*9 0.18 TCGA-VQ-A8PP-01 7 105207765 105207765 T C RINT1 3'UTR 0.32 TCGA-VQ-A8PP-01 7 105516288 105516288 T - ATXN7L1 Frame_Shift_Del p.S74Afs*5 0.24 TCGA-VQ-A8PP-01 7 107234462 107234462 A C BCAP29 Silent p.R86R 0.16 TCGA-VQ-A8PP-01 7 1097787 1097787 C T GPR146 Silent p.R212R 0.19 TCGA-VQ-A8PP-01 7 112424436 112424436 G A TMEM168 Missense_Mutation p.H149Y 0.13 tolerated(1) benign(0.002) TCGA-VQ-A8PP-01 7 113518855 113518855 C T PPP1R3A Silent p.R764R 0.24 TCGA-VQ-A8PP-01 7 116770546 116770546 T C ST7 Missense_Mutation p.Y151H 0.16 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PP-01 7 119914634 119914634 G A KCND2 5'UTR 0.26 TCGA-VQ-A8PP-01 7 119914688 119914688 T C KCND2 Translation_Start_Site p.M1? 0.27 deleterious_low_confidence(0) possibly_damaging(0.87) TCGA-VQ-A8PP-01 7 121726223 121726223 A G AASS Missense_Mutation p.V676A 0.54 deleterious(0.03) benign(0.032) TCGA-VQ-A8PP-01 7 122635109 122635109 C T TAS2R16 Missense_Mutation p.A194T 0.33 tolerated(0.39) benign(0.026) TCGA-VQ-A8PP-01 7 123277085 123277085 T G ASB15 3'UTR 0.42 TCGA-VQ-A8PP-01 7 127225301 127225301 C T GCC1 5'UTR 0.26 TCGA-VQ-A8PP-01 7 127670407 127670407 C T LRRC4 Missense_Mutation p.R96H 0.25 deleterious(0.02) possibly_damaging(0.87) TCGA-VQ-A8PP-01 7 135282825 135282825 T C NUP205 Missense_Mutation p.V715A 0.05 tolerated(0.06) benign(0.425) TCGA-VQ-A8PP-01 7 136700586 136700586 T C CHRM2 Missense_Mutation p.I325T 0.14 tolerated(0.24) benign(0.012) TCGA-VQ-A8PP-01 7 136700792 136700792 T C CHRM2 Silent p.L394L 0.08 TCGA-VQ-A8PP-01 7 142566307 142566307 T C EPHB6 Missense_Mutation p.V699A 0.16 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8PP-01 7 148801365 148801365 C T ZNF425 Missense_Mutation p.R533H 0.34 deleterious(0.01) probably_damaging(0.981) TCGA-VQ-A8PP-01 7 150094514 150094514 C T ZNF775 Silent p.G315G 0.28 TCGA-VQ-A8PP-01 7 150747624 150747624 C T ASIC3 Missense_Mutation p.P248S 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-VQ-A8PP-01 7 1517301 1517301 G A INTS1 Missense_Mutation p.A1608V 0.25 tolerated(0.28) benign(0.002) TCGA-VQ-A8PP-01 7 1526380 1526380 G A INTS1 Missense_Mutation p.R953C 0.23 deleterious(0) probably_damaging(0.973) TCGA-VQ-A8PP-01 7 157000563 157000565 TAC - UBE3C In_Frame_Del p.T583del 0.28 TCGA-VQ-A8PP-01 7 16823093 16823093 G A TSPAN13 Missense_Mutation p.A198T 0.30 deleterious(0.04) benign(0.04) TCGA-VQ-A8PP-01 7 23775219 23775219 C A STK31 Silent p.T182T 0.34 TCGA-VQ-A8PP-01 7 24718830 24718830 A T MPP6 Missense_Mutation p.I399F 0.26 deleterious(0) probably_damaging(0.988) TCGA-VQ-A8PP-01 7 28858944 28858944 C T CREB5 3'UTR 0.11 TCGA-VQ-A8PP-01 7 2949769 2949769 C T CARD11 Missense_Mutation p.G1059S 0.27 tolerated(1) benign(0) TCGA-VQ-A8PP-01 7 30673476 30673476 A C GARS Nonstop_Mutation p.*740Cext*4 0.24 TCGA-VQ-A8PP-01 7 4089022 4089022 A T SDK1 Missense_Mutation p.N882I 0.19 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8PP-01 7 43663446 43663446 G A STK17A Silent p.S293S 0.23 TCGA-VQ-A8PP-01 7 44069208 44069208 C T RASA4CP RNA 0.30 TCGA-VQ-A8PP-01 7 44178494 44178494 C - MYL7 3'UTR 0.24 TCGA-VQ-A8PP-01 7 44924906 44924906 A G PURB Silent p.G14G 0.27 TCGA-VQ-A8PP-01 7 45701744 45701744 G A ADCY1 Missense_Mutation p.M512I 0.32 tolerated(0.05) benign(0.005) TCGA-VQ-A8PP-01 7 47892744 47892744 T C PKD1L1 Missense_Mutation p.I1647M 0.24 deleterious(0.01) possibly_damaging(0.698) TCGA-VQ-A8PP-01 7 53103623 53103623 G A POM121L12 Missense_Mutation p.A87T 0.37 tolerated(0.59) benign(0.01) TCGA-VQ-A8PP-01 7 540776 540776 G A PDGFA Missense_Mutation p.P186L 0.28 tolerated(0.07) possibly_damaging(0.707) TCGA-VQ-A8PP-01 7 55493019 55493019 C T LANCL2 Missense_Mutation p.R361W 0.20 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PP-01 7 55750274 55750274 C T RNU6-389P 5'Flank 0.33 TCGA-VQ-A8PP-01 7 56062627 56062627 G A GBAS Missense_Mutation p.V220I 0.27 tolerated(0.07) possibly_damaging(0.451) TCGA-VQ-A8PP-01 7 5632792 5632792 C T FSCN1 Silent p.D75D 0.22 TCGA-VQ-A8PP-01 7 6193785 6193785 G A USP42 Missense_Mutation p.C867Y 0.21 tolerated(0.39) benign(0.153) TCGA-VQ-A8PP-01 7 64168164 64168164 A C ZNF107 Missense_Mutation p.K494N 0.18 deleterious(0.02) probably_damaging(0.998) TCGA-VQ-A8PP-01 7 64452675 64452675 G A ERV3-1 Missense_Mutation p.R244W 0.28 tolerated(0.09) possibly_damaging(0.648) TCGA-VQ-A8PP-01 7 64452932 64452932 G T ERV3-1 Missense_Mutation p.T158N 0.12 tolerated(0.52) benign(0.02) TCGA-VQ-A8PP-01 7 64863782 64863782 C T ZNF92 Missense_Mutation p.T252I 0.26 deleterious(0.01) probably_damaging(0.96) TCGA-VQ-A8PP-01 7 65751565 65751565 A G TPST1 Missense_Mutation p.K305E 0.16 tolerated(0.08) benign(0.065) TCGA-VQ-A8PP-01 7 6624762 6624762 G A ZDHHC4 Silent p.S204S 0.29 TCGA-VQ-A8PP-01 7 72430682 72430682 C - TRIM74 Frame_Shift_Del p.G199Vfs*80 0.19 TCGA-VQ-A8PP-01 7 7278306 7278306 T C C1GALT1 Missense_Mutation p.V214A 0.19 deleterious(0) benign(0.343) TCGA-VQ-A8PP-01 7 73811444 73811444 C A CLIP2 Missense_Mutation p.R921S 0.15 deleterious(0.01) possibly_damaging(0.829) TCGA-VQ-A8PP-01 7 76885796 76885796 A C CCDC146 Missense_Mutation p.E218D 0.13 tolerated(0.08) benign(0.162) TCGA-VQ-A8PP-01 7 77265153 77265153 A - PTPN12 Frame_Shift_Del p.K712Sfs*5 0.23 TCGA-VQ-A8PP-01 7 82585204 82585204 T - PCLO Frame_Shift_Del p.T1689Qfs*16 0.21 TCGA-VQ-A8PP-01 7 82595446 82595447 - T PCLO Frame_Shift_Ins p.L1220Tfs*4 0.29 TCGA-VQ-A8PP-01 7 87104733 87104733 C T ABCB4 Missense_Mutation p.A17T 0.28 tolerated_low_confidence(0.59) benign(0.001) TCGA-VQ-A8PP-01 7 89794053 89794053 A G STEAP1 3'UTR 0.37 TCGA-VQ-A8PP-01 7 90895613 90895613 T C FZD1 Missense_Mutation p.L473P 0.23 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PP-01 7 909130 909130 G A SUN1 Missense_Mutation p.A709T 0.28 deleterious(0) probably_damaging(0.993) TCGA-VQ-A8PP-01 7 91690584 91690584 C T AKAP9 Missense_Mutation p.A1871V 0.08 probably_damaging(0.949) TCGA-VQ-A8PP-01 7 91864122 91864122 T G KRIT1 Missense_Mutation p.K282T 0.25 deleterious(0.02) possibly_damaging(0.632) TCGA-VQ-A8PP-01 7 92730633 92730633 T C SAMD9 3'UTR 0.27 TCGA-VQ-A8PP-01 7 93540144 93540144 C T GNGT1 Nonsense_Mutation p.R47* 0.21 TCGA-VQ-A8PP-01 7 94185017 94185017 T - CASD1 Frame_Shift_Del p.C783Vfs*21 0.25 TCGA-VQ-A8PP-01 7 94740578 94740578 A G PPP1R9A Missense_Mutation p.N468S 0.16 tolerated(0.84) benign(0.001) TCGA-VQ-A8PP-01 7 97870528 97870528 G A TECPR1 Missense_Mutation p.S229F 0.26 tolerated(0.32) benign(0.045) TCGA-VQ-A8PP-01 7 97933618 97933618 C T BAIAP2L1 Missense_Mutation p.D438N 0.36 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8PP-01 7 98552875 98552875 A G TRRAP Missense_Mutation p.H1955R 0.24 probably_damaging(0.98) TCGA-VQ-A8PP-01 7 99696266 99696266 G A MCM7 Missense_Mutation p.R219W 0.11 deleterious(0) probably_damaging(0.991) TCGA-VQ-A8PP-01 7 99701134 99701134 G A AP4M1 Missense_Mutation p.V152I 0.10 tolerated(0.21) benign(0.14) TCGA-VQ-A8PP-01 7 99773357 99773357 G A GPC2 Silent p.T162T 0.31 TCGA-VQ-A8PP-01 7 99778281 99778281 C T STAG3 Silent p.N34N 0.06 TCGA-VQ-A8PP-01 8 10102688 10102688 G A MSRA Missense_Mutation p.A96T 0.20 deleterious(0.03) possibly_damaging(0.794) TCGA-VQ-A8PP-01 8 103289349 103289349 T - UBR5 Frame_Shift_Del p.E2121Kfs*28 0.18 TCGA-VQ-A8PP-01 8 10388838 10388838 C T PRSS55 Silent p.N127N 0.20 TCGA-VQ-A8PP-01 8 104394855 104394855 T - CTHRC1 3'UTR 0.21 TCGA-VQ-A8PP-01 8 104444942 104444942 T - DCAF13 Frame_Shift_Del p.F406Lfs*22 0.19 TCGA-VQ-A8PP-01 8 105463475 105463475 T C DPYS Missense_Mutation p.Q141R 0.27 tolerated(0.12) benign(0.061) TCGA-VQ-A8PP-01 8 10583646 10583646 G - SOX7 Frame_Shift_Del p.L309Wfs*14 0.16 TCGA-VQ-A8PP-01 8 11188888 11188888 C T SLC35G5 Silent p.G91G 0.19 TCGA-VQ-A8PP-01 8 113249458 113249458 C T CSMD3 Missense_Mutation p.A3530T 0.19 deleterious(0) benign(0.241) TCGA-VQ-A8PP-01 8 120886177 120886177 G A DEPTOR Missense_Mutation p.A31T 0.10 deleterious(0.02) benign(0.156) TCGA-VQ-A8PP-01 8 121292248 121292248 G A COL14A1 Missense_Mutation p.A1186T 0.27 deleterious(0.04) benign(0.014) TCGA-VQ-A8PP-01 8 123965299 123965299 C T ZHX2 Nonsense_Mutation p.R517* 0.27 TCGA-VQ-A8PP-01 8 125131972 125131972 G A FER1L6 Missense_Mutation p.V1839I 0.21 tolerated(0.72) benign(0.389) TCGA-VQ-A8PP-01 8 125498745 125498745 C T RNF139 Silent p.C285C 0.18 TCGA-VQ-A8PP-01 8 125989174 125989174 G A ZNF572 Missense_Mutation p.G222R 0.15 tolerated(0.1) probably_damaging(0.97) TCGA-VQ-A8PP-01 8 125989225 125989225 A G ZNF572 Missense_Mutation p.T239A 0.24 deleterious(0.01) possibly_damaging(0.863) TCGA-VQ-A8PP-01 8 133053358 133053358 C A OC90 Missense_Mutation p.M130I 0.16 tolerated(0.12) benign(0.004) TCGA-VQ-A8PP-01 8 134232957 134232957 C - WISP1 Frame_Shift_Del p.P163Rfs*11 0.29 TCGA-VQ-A8PP-01 8 139155315 139155315 C T FAM135B Missense_Mutation p.R1193Q 0.17 deleterious(0.01) probably_damaging(0.947) TCGA-VQ-A8PP-01 8 139603741 139603741 T C COL22A1 Missense_Mutation p.E1540G 0.21 unknown(0) TCGA-VQ-A8PP-01 8 141745425 141745425 T C PTK2 Missense_Mutation p.Y652C 0.28 deleterious(0) probably_damaging(0.984) TCGA-VQ-A8PP-01 8 142225890 142225890 C T SLC45A4 Missense_Mutation p.A586T 0.21 tolerated(0.13) probably_damaging(0.948) TCGA-VQ-A8PP-01 8 142367589 142367589 G A GPR20 Silent p.C145C 0.23 TCGA-VQ-A8PP-01 8 143310836 143310836 C T TSNARE1 Intron 0.20 TCGA-VQ-A8PP-01 8 143603470 143603470 G A BAI1 Missense_Mutation p.G1057S 0.18 deleterious(0.01) benign(0) TCGA-VQ-A8PP-01 8 143623657 143623657 G A BAI1 Silent p.T1354T 0.29 TCGA-VQ-A8PP-01 8 143783124 143783124 G A LY6K Silent p.A70A 0.35 TCGA-VQ-A8PP-01 8 144891828 144891828 C T SCRIB Missense_Mutation p.V531I 0.22 benign(0.075) TCGA-VQ-A8PP-01 8 144998481 144998481 G A PLEC Silent p.D2009D 0.27 TCGA-VQ-A8PP-01 8 145007044 145007044 C T PLEC Missense_Mutation p.E689K 0.31 unknown(0) TCGA-VQ-A8PP-01 8 145057841 145057841 G T PARP10 Missense_Mutation p.P639H 0.29 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8PP-01 8 145108274 145108274 C T OPLAH Silent p.A903A 0.21 TCGA-VQ-A8PP-01 8 145109541 145109542 - G OPLAH Frame_Shift_Ins p.H870Pfs*92 0.27 TCGA-VQ-A8PP-01 8 145110761 145110761 G A OPLAH Silent p.P726P 0.31 TCGA-VQ-A8PP-01 8 145152154 145152154 T C CYC1 Missense_Mutation p.L298P 0.26 tolerated(0.09) benign(0.082) TCGA-VQ-A8PP-01 8 145694974 145694974 C T KIFC2 Missense_Mutation p.R442C 0.17 deleterious(0) possibly_damaging(0.873) TCGA-VQ-A8PP-01 8 145736923 145736923 G A RECQL4 Missense_Mutation p.P1173L 0.24 deleterious(0) probably_damaging(0.993) TCGA-VQ-A8PP-01 8 15978010 15978010 T C MSR1 Missense_Mutation p.E380G 0.19 tolerated(0.18) benign(0.046) TCGA-VQ-A8PP-01 8 17478582 17478582 G A PDGFRL Missense_Mutation p.G126S 0.21 tolerated(0.99) benign(0.048) TCGA-VQ-A8PP-01 8 1817396 1817396 A - ARHGEF10 Frame_Shift_Del p.N221Tfs*9 0.16 TCGA-VQ-A8PP-01 8 20068114 20068114 C T ATP6V1B2 Silent p.D140D 0.20 TCGA-VQ-A8PP-01 8 20110653 20110653 G T LZTS1 Silent p.I263I 0.20 TCGA-VQ-A8PP-01 8 21927806 21927806 A G DMTN Missense_Mutation p.T189A 0.23 deleterious(0.04) possibly_damaging(0.624) TCGA-VQ-A8PP-01 8 21931310 21931310 A C DMTN Missense_Mutation p.T267P 0.23 deleterious(0.05) benign(0.102) TCGA-VQ-A8PP-01 8 21985135 21985135 C - HR Frame_Shift_Del p.V274Cfs*89 0.19 TCGA-VQ-A8PP-01 8 22140662 22140662 C - PIWIL2 Frame_Shift_Del p.P182Rfs*23 0.12 TCGA-VQ-A8PP-01 8 23049431 23049431 C T TNFRSF10A Missense_Mutation p.D395N 0.10 tolerated(0.33) benign(0.294) TCGA-VQ-A8PP-01 8 24357770 24357770 G A ADAM7 Splice_Site p.X668_splice 0.20 TCGA-VQ-A8PP-01 8 26501044 26501044 T G DPYSL2 Missense_Mutation p.F301V 0.15 deleterious(0.02) possibly_damaging(0.729) TCGA-VQ-A8PP-01 8 27634295 27634295 C A ESCO2 Missense_Mutation p.P157H 0.17 deleterious(0.04) benign(0.013) TCGA-VQ-A8PP-01 8 27965439 27965439 T C ELP3 Silent p.P113P 0.24 TCGA-VQ-A8PP-01 8 30541661 30541661 T C GSR Missense_Mutation p.N366S 0.25 tolerated(0.72) benign(0.001) TCGA-VQ-A8PP-01 8 30702511 30702511 T G TEX15 Silent p.A1341A 0.23 TCGA-VQ-A8PP-01 8 37730180 37730181 - T RAB11FIP1 Frame_Shift_Ins p.Q714Tfs*22 0.17 TCGA-VQ-A8PP-01 8 38067778 38067778 A - BAG4 Frame_Shift_Del p.I383Sfs*15 0.11 TCGA-VQ-A8PP-01 8 41798569 41798569 C - KAT6A Frame_Shift_Del p.V944Lfs*15 0.18 TCGA-VQ-A8PP-01 8 42294915 42294915 G A SLC20A2 Missense_Mutation p.A372V 0.20 tolerated(0.51) benign(0.003) TCGA-VQ-A8PP-01 8 42611064 42611064 C T CHRNA6 Silent p.S426S 0.22 TCGA-VQ-A8PP-01 8 442651 442651 T - TDRP Frame_Shift_Del p.K102Nfs*65 0.20 TCGA-VQ-A8PP-01 8 442734 442734 G A TDRP Nonsense_Mutation p.R75* 0.21 TCGA-VQ-A8PP-01 8 48744484 48744484 G A PRKDC Missense_Mutation p.A2718V 0.20 benign(0) TCGA-VQ-A8PP-01 8 48848299 48848299 A G PRKDC Silent p.S480S 0.17 TCGA-VQ-A8PP-01 8 52321682 52321682 G T PXDNL Silent p.S834S 0.18 TCGA-VQ-A8PP-01 8 56863054 56863054 A - LYN Frame_Shift_Del p.E110Kfs*15 0.23 TCGA-VQ-A8PP-01 8 59059286 59059286 A G FAM110B Missense_Mutation p.Y166C 0.15 tolerated(0.17) benign(0) TCGA-VQ-A8PP-01 8 6612617 6612617 G A AGPAT5 Missense_Mutation p.R264H 0.21 deleterious(0.01) benign(0.322) TCGA-VQ-A8PP-01 8 67364308 67364308 C T ADHFE1 Silent p.H285H 0.12 TCGA-VQ-A8PP-01 8 67547094 67547094 G A VCPIP1 Missense_Mutation p.A1104V 0.17 tolerated_low_confidence(0.19) benign(0.006) TCGA-VQ-A8PP-01 8 67752239 67752239 T - SGK3 Frame_Shift_Del p.F250Sfs*33 0.32 TCGA-VQ-A8PP-01 8 68076631 68076631 A - CSPP1 Frame_Shift_Del p.N903Mfs*2 0.51 TCGA-VQ-A8PP-01 8 69046500 69046500 T C PREX2 Missense_Mutation p.S1325P 0.18 deleterious(0.01) possibly_damaging(0.462) TCGA-VQ-A8PP-01 8 71074971 71074971 G T NCOA2 Silent p.S317S 0.19 TCGA-VQ-A8PP-01 8 71495534 71495534 C T TRAM1 Missense_Mutation p.V306I 0.23 tolerated(0.26) benign(0.001) TCGA-VQ-A8PP-01 8 71619326 71619326 G A XKR9 Missense_Mutation p.C144Y 0.21 deleterious(0.02) probably_damaging(0.916) TCGA-VQ-A8PP-01 8 72754648 72754648 G A MSC 3'UTR 0.25 TCGA-VQ-A8PP-01 8 75157324 75157324 G A JPH1 Missense_Mutation p.P449S 0.25 deleterious(0.04) benign(0.04) TCGA-VQ-A8PP-01 8 77618884 77618884 C T ZFHX4 Missense_Mutation p.A854V 0.15 possibly_damaging(0.695) TCGA-VQ-A8PP-01 8 77690659 77690659 C T ZFHX4 Silent p.C1103C 0.13 TCGA-VQ-A8PP-01 8 80954866 80954866 C T TPD52 Missense_Mutation p.E182K 0.14 deleterious(0.01) probably_damaging(0.997) TCGA-VQ-A8PP-01 8 86386635 86386635 T - CA2 Frame_Shift_Del p.L147* 0.21 TCGA-VQ-A8PP-01 8 87423880 87423880 G T WWP1 Missense_Mutation p.D280Y 0.23 deleterious(0.04) benign(0.229) TCGA-VQ-A8PP-01 8 87656861 87656861 T A CNGB3 Silent p.A348A 0.23 TCGA-VQ-A8PP-01 8 8869229 8869229 G A ERI1 Silent p.P155P 0.19 TCGA-VQ-A8PP-01 8 90782121 90782121 A - RIPK2 Frame_Shift_Del p.K203Nfs*36 0.19 TCGA-VQ-A8PP-01 8 94746068 94746068 C A RBM12B Missense_Mutation p.E857D 0.23 tolerated(0.39) probably_damaging(0.931) TCGA-VQ-A8PP-01 8 95164341 95164341 C A CDH17 Splice_Site p.X518_splice 0.22 TCGA-VQ-A8PP-01 8 9567544 9567544 A - TNKS Frame_Shift_Del p.N555Ifs*5 0.23 TCGA-VQ-A8PP-01 8 9620699 9620699 C T TNKS Missense_Mutation p.T1106M 0.12 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PP-01 8 99118169 99118169 G A HRSP12 Nonsense_Mutation p.Q98* 0.06 TCGA-VQ-A8PP-01 8 99961660 99961660 T C OSR2 Silent p.S160S 0.19 TCGA-VQ-A8PP-01 9 100258231 100258231 A - TDRD7 3'UTR 0.24 TCGA-VQ-A8PP-01 9 100418317 100418317 T C NCBP1 Silent p.P441P 0.40 TCGA-VQ-A8PP-01 9 100616687 100616687 C T FOXE1 Missense_Mutation p.A164V 0.42 tolerated(0.08) benign(0.185) TCGA-VQ-A8PP-01 9 101824553 101824553 C T COL15A1 Silent p.A1186A 0.20 TCGA-VQ-A8PP-01 9 101907121 101907121 G A TGFBR1 Missense_Mutation p.A361T 0.11 tolerated(0.59) probably_damaging(0.986) TCGA-VQ-A8PP-01 9 102677553 102677553 G A STX17 Missense_Mutation p.R11H 0.25 deleterious(0.02) benign(0.133) TCGA-VQ-A8PP-01 9 102731024 102731024 C T STX17 3'UTR 0.30 TCGA-VQ-A8PP-01 9 103062934 103062935 - A INVS Frame_Shift_Ins p.N1061Kfs*20 0.20 TCGA-VQ-A8PP-01 9 103312430 103312430 C A TMEFF1 Missense_Mutation p.P255T 0.18 tolerated(0.67) benign(0.335) TCGA-VQ-A8PP-01 9 105767799 105767799 G A CYLC2 Missense_Mutation p.A296T 0.33 tolerated(0.29) unknown(0) TCGA-VQ-A8PP-01 9 107331913 107331913 C A OR13C8 Missense_Mutation p.D155E 0.29 deleterious(0.01) possibly_damaging(0.771) TCGA-VQ-A8PP-01 9 107457416 107457416 A G OR13D1 Silent p.S238S 0.13 TCGA-VQ-A8PP-01 9 109686821 109686821 G A ZNF462 Missense_Mutation p.V210I 0.18 benign(0.103) TCGA-VQ-A8PP-01 9 109689042 109689042 C T ZNF462 Missense_Mutation p.T950M 0.25 probably_damaging(0.998) TCGA-VQ-A8PP-01 9 111625666 111625667 - G ACTL7A Frame_Shift_Ins p.N357Efs*16 0.24 TCGA-VQ-A8PP-01 9 112144049 112144049 G A PTPN3 Silent p.T849T 0.27 TCGA-VQ-A8PP-01 9 113192286 113192286 T G SVEP1 Splice_Site p.X1844_splice 0.35 TCGA-VQ-A8PP-01 9 114825229 114825229 T - SUSD1 Frame_Shift_Del p.N613Mfs*10 0.31 TCGA-VQ-A8PP-01 9 117123 117123 G A FOXD4 Missense_Mutation p.R333W 0.47 deleterious(0.02) benign(0.42) TCGA-VQ-A8PP-01 9 121929812 121929812 G A BRINP1 Silent p.F612F 0.27 TCGA-VQ-A8PP-01 9 125315624 125315624 A G OR1N2 Missense_Mutation p.N59S 0.25 deleterious(0.02) probably_damaging(0.985) TCGA-VQ-A8PP-01 9 125617559 125617559 C T RC3H2 Missense_Mutation p.A907T 0.36 deleterious(0) probably_damaging(0.98) TCGA-VQ-A8PP-01 9 125673332 125673333 - T ZBTB6 Frame_Shift_Ins p.N340Kfs*49 0.22 TCGA-VQ-A8PP-01 9 127265574 127265574 T - NR5A1 Frame_Shift_Del p.K34Rfs*41 0.47 TCGA-VQ-A8PP-01 9 130250027 130250027 C T LRSAM1 Silent p.S444S 0.34 TCGA-VQ-A8PP-01 9 131019151 131019151 T - GOLGA2 3'UTR 0.38 TCGA-VQ-A8PP-01 9 131023985 131023985 T C GOLGA2 Missense_Mutation p.M369V 0.17 deleterious(0.05) benign(0.003) TCGA-VQ-A8PP-01 9 131193540 131193540 C T CERCAM Silent p.G387G 0.27 TCGA-VQ-A8PP-01 9 131394529 131394529 G A SPTAN1 Missense_Mutation p.A2296T 0.31 deleterious(0) benign(0.157) TCGA-VQ-A8PP-01 9 131476550 131476550 C - PKN3 Frame_Shift_Del p.C465Afs*43 0.25 TCGA-VQ-A8PP-01 9 131479170 131479171 - A PKN3 Frame_Shift_Ins p.H652Tfs*38 0.20 TCGA-VQ-A8PP-01 9 131671141 131671141 C T LRRC8A Silent p.G566G 0.18 TCGA-VQ-A8PP-01 9 134334729 134334729 G T PRRC2B Missense_Mutation p.G464C 0.28 tolerated(0.05) possibly_damaging(0.67) TCGA-VQ-A8PP-01 9 134387525 134387525 T C POMT1 Splice_Site p.X383_splice 0.33 TCGA-VQ-A8PP-01 9 135277202 135277202 T - TTF1 Frame_Shift_Del p.K336Rfs*87 0.24 TCGA-VQ-A8PP-01 9 135772906 135772906 T G TSC1 Missense_Mutation p.Q906P 0.29 deleterious(0.01) possibly_damaging(0.756) TCGA-VQ-A8PP-01 9 135865176 135865176 G A GFI1B Silent p.S232S 0.28 TCGA-VQ-A8PP-01 9 135985684 135985684 T - RALGDS Frame_Shift_Del p.R163Gfs*105 0.23 TCGA-VQ-A8PP-01 9 136268842 136268842 C - C9orf96 Frame_Shift_Del p.L500Wfs*64 0.31 TCGA-VQ-A8PP-01 9 136298598 136298598 G A ADAMTS13 Missense_Mutation p.R398H 0.25 deleterious(0) probably_damaging(0.994) TCGA-VQ-A8PP-01 9 136918561 136918561 C T BRD3 Silent p.P13P 0.12 TCGA-VQ-A8PP-01 9 137804347 137804347 C T FCN1 Missense_Mutation p.A195T 0.15 tolerated(0.49) benign(0.075) TCGA-VQ-A8PP-01 9 138703229 138703229 C T CAMSAP1 Missense_Mutation p.A1579T 0.21 deleterious(0) probably_damaging(1) TCGA-VQ-A8PP-01 9 139345792 139345792 C T SEC16A Silent p.T2076T 0.19 TCGA-VQ-A8PP-01 9 139906788 139906788 T C ABCA2 Missense_Mutation p.Y1743C 0.29 deleterious(0) probably_damaging(0.978) TCGA-VQ-A8PP-01 9 139911707 139911707 C T ABCA2 Missense_Mutation p.V832M 0.31 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8PP-01 9 140160352 140160352 A G NELFB Missense_Mutation p.D307G 0.17 deleterious(0.04) probably_damaging(1) TCGA-VQ-A8PP-01 9 140355127 140355127 C T PNPLA7 Missense_Mutation p.A1302T 0.22 tolerated_low_confidence(0.2) benign(0.036) TCGA-VQ-A8PP-01 9 140772607 140772607 G T CACNA1B Silent p.S74S 0.13 TCGA-VQ-A8PP-01 9 14307197 14307197 A G NFIB Missense_Mutation p.I118T 0.43 deleterious(0) probably_damaging(0.979) TCGA-VQ-A8PP-01 9 15468834 15468834 C T PSIP1 Missense_Mutation p.R405Q 0.07 tolerated(0.1) benign(0.207) TCGA-VQ-A8PP-01 9 20881927 20881927 G A FOCAD Missense_Mutation p.G792E 0.05 deleterious(0) probably_damaging(0.964) TCGA-VQ-A8PP-01 9 2097391 2097391 G A SMARCA2 Missense_Mutation p.G1000R 0.40 probably_damaging(0.988) TCGA-VQ-A8PP-01 9 21481417 21481417 T C IFNE Missense_Mutation p.R93G 0.46 tolerated(0.21) benign(0.007) TCGA-VQ-A8PP-01 9 21994358 21994358 G C RP11-149I2.4 5'Flank 0.52 TCGA-VQ-A8PP-01 9 26997918 26997918 G A LRRC19 Nonsense_Mutation p.Q135* 0.44 TCGA-VQ-A8PP-01 9 27950348 27950348 G A LINGO2 Missense_Mutation p.R108C 0.23 deleterious(0) probably_damaging(0.957) TCGA-VQ-A8PP-01 9 32493804 32493804 A C DDX58 Missense_Mutation p.D126E 0.09 tolerated(0.66) benign(0.001) TCGA-VQ-A8PP-01 9 33464076 33464076 G A NOL6 Missense_Mutation p.R955C 0.20 deleterious(0.02) possibly_damaging(0.893) TCGA-VQ-A8PP-01 9 34660538 34660538 G A IL11RA Silent p.A370A 0.17 TCGA-VQ-A8PP-01 9 35043532 35043532 T C C9orf131 Silent p.A302A 0.40 TCGA-VQ-A8PP-01 9 35044091 35044091 G T C9orf131 Nonsense_Mutation p.G489* 0.09 TCGA-VQ-A8PP-01 9 35090495 35090495 G A PIGO Missense_Mutation p.A941V 0.21 tolerated(0.56) benign(0.129) TCGA-VQ-A8PP-01 9 35091742 35091742 A G PIGO Silent p.G714G 0.36 TCGA-VQ-A8PP-01 9 35450027 35450027 G A ATP8B5P RNA 0.20 TCGA-VQ-A8PP-01 9 35809983 35809983 A G SPAG8 Intron 0.18 TCGA-VQ-A8PP-01 9 35811510 35811515 CCAGGA - SPAG8 In_Frame_Del p.P177_G178del 0.44 TCGA-VQ-A8PP-01 9 37745065 37745065 C A FRMPD1 Silent p.S1012S 0.24 TCGA-VQ-A8PP-01 9 37857316 37857316 A T DCAF10 Missense_Mutation p.E378V 0.08 deleterious(0.04) possibly_damaging(0.452) TCGA-VQ-A8PP-01 9 3937161 3937161 C A GLIS3 Missense_Mutation p.R580M 0.44 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8PP-01 9 404984 404984 T G DOCK8 Missense_Mutation p.C1101G 0.14 deleterious(0.01) probably_damaging(0.998) TCGA-VQ-A8PP-01 9 4117860 4117860 C T GLIS3 Missense_Mutation p.G540S 0.21 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PP-01 9 43630528 43630528 C T SPATA31A6 Silent p.S58S 0.17 TCGA-VQ-A8PP-01 9 5339832 5339832 C T RLN1 5'UTR 0.47 TCGA-VQ-A8PP-01 9 70993145 70993145 A G PGM5 Missense_Mutation p.I98V 0.10 deleterious(0.01) possibly_damaging(0.573) TCGA-VQ-A8PP-01 9 72046268 72046268 G A APBA1 Missense_Mutation p.A830V 0.06 deleterious(0) probably_damaging(0.98) TCGA-VQ-A8PP-01 9 74300077 74300077 T - TMEM2 3'UTR 0.43 TCGA-VQ-A8PP-01 9 74354984 74354984 A G TMEM2 Missense_Mutation p.I400T 0.07 tolerated(0.28) benign(0.044) TCGA-VQ-A8PP-01 9 78938192 78938192 A G PCSK5 Missense_Mutation p.K1416E 0.23 tolerated(0.77) benign(0) TCGA-VQ-A8PP-01 9 79634600 79634600 C T FOXB2 Silent p.S10S 0.44 TCGA-VQ-A8PP-01 9 79968366 79968366 T C VPS13A Silent p.Y2487Y 0.31 TCGA-VQ-A8PP-01 9 84608350 84608350 G A SPATA31D1 Missense_Mutation p.V989I 0.27 deleterious(0.03) possibly_damaging(0.621) TCGA-VQ-A8PP-01 9 86297978 86297978 A C UBQLN1 Silent p.P112P 0.20 TCGA-VQ-A8PP-01 9 86485507 86485507 G A KIF27 Missense_Mutation p.P895L 0.18 tolerated(0.71) benign(0) TCGA-VQ-A8PP-01 9 91617077 91617077 G - S1PR3 Frame_Shift_Del p.A323Pfs*84 0.27 TCGA-VQ-A8PP-01 9 96051437 96051437 C T WNK2 Silent p.D1504D 0.36 TCGA-VQ-A8PP-01 9 98231190 98231190 C A PTCH1 Missense_Mutation p.S698I 0.30 deleterious(0.03) benign(0.009) TCGA-VQ-A8PP-01 9 98677987 98677987 A G ERCC6L2 Missense_Mutation p.R287G 0.31 deleterious(0.03) benign(0.297) TCGA-VQ-A8PP-01 X 100505991 100505991 T C DRP2 Missense_Mutation p.L595P 0.14 deleterious(0) probably_damaging(1) TCGA-VQ-A8PP-01 X 10106889 10106889 C T WWC3 Silent p.D999D 0.37 TCGA-VQ-A8PP-01 X 10176216 10176216 G A CLCN4 Silent p.T325T 0.61 TCGA-VQ-A8PP-01 X 102005249 102005249 T C BHLHB9 Silent p.V442V 0.13 TCGA-VQ-A8PP-01 X 103045532 103045532 C T PLP1 3'UTR 0.14 TCGA-VQ-A8PP-01 X 103499074 103499074 C T ESX1 Silent p.P89P 0.64 TCGA-VQ-A8PP-01 X 105450367 105450367 A G MUM1L1 Silent p.S314S 0.78 TCGA-VQ-A8PP-01 X 105450785 105450785 C G MUM1L1 Missense_Mutation p.L454V 0.17 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8PP-01 X 108697040 108697040 G A GUCY2F Nonsense_Mutation p.Q361* 0.67 TCGA-VQ-A8PP-01 X 109459839 109459839 A - AMMECR1 Frame_Shift_Del p.P204Qfs*2 0.41 TCGA-VQ-A8PP-01 X 110925519 110925519 G A ALG13 Missense_Mutation p.A81T 0.50 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-VQ-A8PP-01 X 118219422 118219422 G A KIAA1210 Missense_Mutation p.A1591V 0.47 tolerated(0.27) benign(0.006) TCGA-VQ-A8PP-01 X 123019554 123019554 T C XIAP Silent p.P14P 0.62 TCGA-VQ-A8PP-01 X 12736595 12736595 C T FRMPD4 Missense_Mutation p.S1217L 0.51 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-VQ-A8PP-01 X 134156358 134156358 G A FAM127C Silent p.I44I 0.58 TCGA-VQ-A8PP-01 X 135405372 135405372 G A GPR112 Missense_Mutation p.S169N 0.15 tolerated(0.2) benign(0.412) TCGA-VQ-A8PP-01 X 135572320 135572320 C T BRS3 Nonsense_Mutation p.R155* 0.66 TCGA-VQ-A8PP-01 X 138701772 138701773 - T MCF2 Frame_Shift_Ins p.L321Ifs*6 0.42 TCGA-VQ-A8PP-01 X 14550419 14550419 T A GLRA2 Missense_Mutation p.S43T 0.65 tolerated(0.12) possibly_damaging(0.86) TCGA-VQ-A8PP-01 X 151821414 151821414 C T GABRQ Silent p.G523G 0.52 TCGA-VQ-A8PP-01 X 153062979 153062979 C T SSR4 Missense_Mutation p.R85C 0.50 deleterious(0.01) probably_damaging(0.947) TCGA-VQ-A8PP-01 X 153589696 153589696 C T FLNA Missense_Mutation p.A1063T 0.62 tolerated(0.51) benign(0.005) TCGA-VQ-A8PP-01 X 153693492 153693492 G A PLXNA3 Silent p.V725V 0.42 TCGA-VQ-A8PP-01 X 153696761 153696761 A G PLXNA3 Missense_Mutation p.D1360G 0.64 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A8PP-01 X 154157088 154157088 T C F8 Silent p.P1659P 0.38 TCGA-VQ-A8PP-01 X 155004555 155004555 T G SPRY3 3'UTR 0.31 TCGA-VQ-A8PP-01 X 1584824 1584824 C T P2RY8 Missense_Mutation p.V210M 0.32 deleterious(0.03) possibly_damaging(0.593) TCGA-VQ-A8PP-01 X 17818712 17818712 G A RAI2 Silent p.S473S 0.52 TCGA-VQ-A8PP-01 X 19984695 19984695 T C CXorf23 Silent p.E38E 0.67 TCGA-VQ-A8PP-01 X 24006015 24006015 T - KLHL15 3'UTR 0.35 TCGA-VQ-A8PP-01 X 2407349 2407349 A G ZBED1 Missense_Mutation p.V471A 0.24 tolerated(0.1) possibly_damaging(0.831) TCGA-VQ-A8PP-01 X 34149992 34149992 G T FAM47A Missense_Mutation p.P135H 0.53 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8PP-01 X 35974282 35974282 A - CXorf22 Frame_Shift_Del p.K461Rfs*12 0.44 TCGA-VQ-A8PP-01 X 37651279 37651279 A G CYBB Missense_Mutation p.K102E 0.38 deleterious(0.01) probably_damaging(0.994) TCGA-VQ-A8PP-01 X 47070607 47070607 G A UBA1 Missense_Mutation p.S816N 0.56 tolerated(0.59) benign(0.002) TCGA-VQ-A8PP-01 X 48929583 48929583 G A AF196779.12 Missense_Mutation p.T275M 0.35 deleterious_low_confidence(0) possibly_damaging(0.791) TCGA-VQ-A8PP-01 X 48935760 48935760 A T WDR45 5'UTR 0.68 TCGA-VQ-A8PP-01 X 50135338 50135338 C T DGKK Splice_Site 0.60 TCGA-VQ-A8PP-01 X 50213562 50213562 G A DGKK RNA 0.58 TCGA-VQ-A8PP-01 X 50350785 50350785 C T SHROOM4 Silent p.Q1119Q 0.59 TCGA-VQ-A8PP-01 X 50377685 50377685 G - SHROOM4 Frame_Shift_Del p.P463Lfs*23 0.39 TCGA-VQ-A8PP-01 X 53613768 53613768 C A HUWE1 Missense_Mutation p.K1572N 0.55 benign(0.092) TCGA-VQ-A8PP-01 X 53965674 53965674 G A PHF8 Missense_Mutation p.R1034C 0.64 deleterious(0) possibly_damaging(0.877) TCGA-VQ-A8PP-01 X 70346234 70346234 G A MED12 Missense_Mutation p.G862D 0.67 probably_damaging(0.996) TCGA-VQ-A8PP-01 X 70777422 70777422 G A OGT Missense_Mutation p.R501K 0.53 tolerated(0.25) possibly_damaging(0.601) TCGA-VQ-A8PP-01 X 71349790 71349790 C T RGAG4 Missense_Mutation p.R534H 0.33 tolerated_low_confidence(0.26) unknown(0) TCGA-VQ-A8PP-01 X 78010355 78010355 A - LPAR4 5'UTR 0.64 TCGA-VQ-A8PP-01 X 78622708 78622708 A G ITM2A Missense_Mutation p.V2A 0.38 deleterious(0) possibly_damaging(0.885) TCGA-VQ-A8PP-01 X 86877247 86877247 C A KLHL4 Missense_Mutation p.L321I 0.56 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A8PP-01 X 99662505 99662505 G - PCDH19 Frame_Shift_Del p.P364Rfs*4 0.48 TCGA-VQ-A8PP-01 Y 14953025 14953025 A G USP9Y Missense_Mutation p.T2060A 0.12 deleterious(0.03) probably_damaging(0.997) TCGA-VQ-A8PP-01 Y 16942156 16942156 C T NLGN4Y Missense_Mutation p.A453V 0.22 tolerated(0.22) probably_damaging(0.994) TCGA-VQ-A8PP-01 Y 22941554 22941554 T C RPS4Y2 Splice_Site p.X230_splice 0.63 TCGA-VQ-A8PQ-01 11 904822 904822 G C CHID1 5'UTR 0.11 TCGA-VQ-A8PQ-01 12 117584023 117584023 A G FBXO21 Missense_Mutation p.F586L 0.08 deleterious(0) probably_damaging(1) TCGA-VQ-A8PQ-01 16 1244995 1244995 T C CACNA1H Missense_Mutation p.L108P 0.09 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PQ-01 16 9862754 9862754 G A GRIN2A Missense_Mutation p.T850M 0.09 tolerated(0.57) probably_damaging(0.997) TCGA-VQ-A8PQ-01 19 21720538 21720538 A G ZNF429 Silent p.G561G 0.15 TCGA-VQ-A8PQ-01 19 55285062 55285062 C T KIR2DL1 Silent p.D116D 0.10 TCGA-VQ-A8PQ-01 1 159410003 159410003 G A OR10J1 Missense_Mutation p.R152H 0.07 deleterious(0) benign(0.01) TCGA-VQ-A8PQ-01 1 173506159 173506159 C G SLC9C2 Missense_Mutation p.R526P 0.05 tolerated(0.2) benign(0.209) TCGA-VQ-A8PQ-01 1 209933512 209933512 G A TRAF3IP3 Missense_Mutation p.R43H 0.09 deleterious(0.02) benign(0.201) TCGA-VQ-A8PQ-01 1 37941429 37941429 G A ZC3H12A Missense_Mutation p.R111Q 0.14 deleterious(0.04) probably_damaging(0.984) TCGA-VQ-A8PQ-01 20 2591108 2591108 T C TMC2 Missense_Mutation p.L486P 0.04 deleterious(0) probably_damaging(0.99) TCGA-VQ-A8PQ-01 3 134322496 134322496 G A KY Silent p.V637V 0.08 TCGA-VQ-A8PQ-01 5 129243981 129243981 G T CHSY3 Silent p.T338T 0.09 TCGA-VQ-A8PQ-01 5 140627048 140627048 C T PCDHB15 Silent p.D634D 0.06 TCGA-VQ-A8PQ-01 5 56178646 56178646 C T MAP3K1 Nonsense_Mutation p.Q1207* 0.08 TCGA-VQ-A8PQ-01 6 107956624 107956624 C T SOBP Missense_Mutation p.P859L 0.06 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PQ-01 X 148044346 148044346 G A AFF2 Missense_Mutation p.S931N 0.05 tolerated(0.06) benign(0.079) TCGA-VQ-A8PS-01 10 127569210 127569210 G A DHX32 Missense_Mutation p.L62F 0.41 deleterious(0.04) probably_damaging(0.999) TCGA-VQ-A8PS-01 10 18289719 18289719 T C SLC39A12 Missense_Mutation p.I575T 0.07 tolerated(0.07) possibly_damaging(0.891) TCGA-VQ-A8PS-01 10 24498067 24498067 A G KIAA1217 5'Flank 0.44 TCGA-VQ-A8PS-01 10 92678627 92678627 C T ANKRD1 Missense_Mutation p.D150N 0.38 deleterious(0.03) benign(0.263) TCGA-VQ-A8PS-01 11 1016198 1016200 AGA - MUC6 In_Frame_Del p.S2201del 0.25 TCGA-VQ-A8PS-01 11 105782657 105782657 G A GRIA4 Intron 0.39 TCGA-VQ-A8PS-01 11 65788641 65788641 G A CATSPER1 Silent p.V569V 0.26 TCGA-VQ-A8PS-01 13 74387337 74387337 A C KLF12 Missense_Mutation p.V253G 0.50 tolerated(0.49) probably_damaging(0.957) TCGA-VQ-A8PS-01 13 88330455 88330455 A T SLITRK5 Nonsense_Mutation p.K938* 0.32 TCGA-VQ-A8PS-01 15 23811751 23811751 G C MKRN3 Missense_Mutation p.L274F 0.41 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8PS-01 15 25319350 25319350 C T SNORD116-10 RNA 0.35 TCGA-VQ-A8PS-01 16 27480816 27480816 C T GTF3C1 Missense_Mutation p.E1624K 0.18 tolerated(0.14) probably_damaging(0.935) TCGA-VQ-A8PS-01 16 29690447 29690447 C T QPRT 5'UTR 0.42 TCGA-VQ-A8PS-01 16 31487381 31487381 G A TGFB1I1 Missense_Mutation p.G255R 0.19 deleterious(0.04) benign(0.02) TCGA-VQ-A8PS-01 16 56670802 56670802 G A MT1M 3'Flank 0.25 TCGA-VQ-A8PS-01 17 5042280 5042280 G T USP6 Intron 0.62 TCGA-VQ-A8PS-01 17 6524190 6524190 C T KIAA0753 Silent p.K411K 0.33 TCGA-VQ-A8PS-01 19 23836634 23836634 G C ZNF675 Silent p.P367P 0.28 TCGA-VQ-A8PS-01 1 12907980 12907980 C T HNRNPCL1 Missense_Mutation p.V55I 0.07 tolerated(0.1) benign(0.199) TCGA-VQ-A8PS-01 1 156821914 156821914 C A INSRR Missense_Mutation p.G236V 0.34 deleterious(0.03) possibly_damaging(0.711) TCGA-VQ-A8PS-01 1 158549195 158549195 G A OR10X1 Silent p.C165C 0.36 TCGA-VQ-A8PS-01 1 161970098 161970098 C T OLFML2B Missense_Mutation p.V252M 0.26 tolerated(0.08) possibly_damaging(0.571) TCGA-VQ-A8PS-01 1 169822809 169822809 A T C1orf112 3'UTR 0.10 TCGA-VQ-A8PS-01 1 171605355 171605355 C T MYOC Missense_Mutation p.E409K 0.28 tolerated(0.09) benign(0.299) TCGA-VQ-A8PS-01 1 207718774 207718774 G A CR1 Silent p.A786A 0.31 TCGA-VQ-A8PS-01 1 232596719 232596719 G A SIPA1L2 Silent p.T1003T 0.21 TCGA-VQ-A8PS-01 1 40431611 40431611 C T MFSD2A Silent p.F226F 0.25 TCGA-VQ-A8PS-01 20 32248067 32248067 C T NECAB3 Nonsense_Mutation p.W174* 0.31 TCGA-VQ-A8PS-01 22 26348375 26348375 A T MYO18B Missense_Mutation p.I1986F 0.24 deleterious(0.02) possibly_damaging(0.891) TCGA-VQ-A8PS-01 22 40825693 40825693 T A MKL1 Missense_Mutation p.K73M 0.44 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PS-01 2 201846441 201846441 C T FAM126B Missense_Mutation p.R382H 0.35 deleterious(0.03) benign(0.006) TCGA-VQ-A8PS-01 2 202082497 202082497 C T CASP10 3'UTR 0.17 TCGA-VQ-A8PS-01 2 32640831 32640831 T A BIRC6 Nonsense_Mutation p.Y824* 0.24 TCGA-VQ-A8PS-01 2 40657223 40657223 G A SLC8A1 Silent p.P66P 0.28 TCGA-VQ-A8PS-01 2 54148139 54148139 A G PSME4 Missense_Mutation p.S717P 0.27 deleterious(0.01) possibly_damaging(0.514) TCGA-VQ-A8PS-01 2 61009041 61009041 C T PAPOLG Missense_Mutation p.H310Y 0.29 deleterious(0.02) possibly_damaging(0.805) TCGA-VQ-A8PS-01 2 74474271 74474271 C T SLC4A5 Missense_Mutation p.D651N 0.12 deleterious(0) probably_damaging(1) TCGA-VQ-A8PS-01 3 111983181 111983181 A G SLC9C1 Silent p.T296T 0.35 TCGA-VQ-A8PS-01 3 2942386 2942387 - A CNTN4 Frame_Shift_Ins p.I322Nfs*3 0.09 TCGA-VQ-A8PS-01 3 47125784 47125784 T G SETD2 Missense_Mutation p.Q1829P 0.45 deleterious(0) probably_damaging(0.993) TCGA-VQ-A8PS-01 3 52682399 52682400 - T PBRM1 Frame_Shift_Ins p.N258Kfs*6 0.35 TCGA-VQ-A8PS-01 4 103585924 103585924 T A MANBA Missense_Mutation p.H468L 0.45 tolerated(0.21) benign(0.158) TCGA-VQ-A8PS-01 4 108930917 108930917 T A HADH Silent p.V45V 0.38 TCGA-VQ-A8PS-01 4 169049278 169049278 T G ANXA10 Missense_Mutation p.M21R 0.39 tolerated(0.57) benign(0.002) TCGA-VQ-A8PS-01 4 3215837 3215837 C T HTT Silent p.Y2309Y 0.21 TCGA-VQ-A8PS-01 5 156742095 156742095 T G CYFIP2 Missense_Mutation p.F424C 0.21 deleterious(0) possibly_damaging(0.617) TCGA-VQ-A8PS-01 5 161576165 161576165 C T GABRG2 Missense_Mutation p.S365L 0.31 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8PS-01 5 176518709 176518709 C T FGFR4 Silent p.L209L 0.24 TCGA-VQ-A8PS-01 5 179740900 179740900 G A GFPT2 Silent p.G446G 0.15 TCGA-VQ-A8PS-01 5 24535221 24535221 T C CDH10 Missense_Mutation p.N272D 0.26 tolerated(0.05) benign(0.007) TCGA-VQ-A8PS-01 6 157963739 157963739 C T ZDHHC14 Missense_Mutation p.A123V 0.46 deleterious(0.04) possibly_damaging(0.897) TCGA-VQ-A8PS-01 6 33246489 33246489 G A B3GALT4 3'UTR 0.23 TCGA-VQ-A8PS-01 6 41162309 41162309 C T TREML2 Silent p.A213A 0.37 TCGA-VQ-A8PS-01 6 46672361 46672361 T A PLA2G7 Missense_Mutation p.N421I 0.20 tolerated(0.05) benign(0.053) TCGA-VQ-A8PS-01 6 55120033 55120033 C T HCRTR2 Missense_Mutation p.R168W 0.15 deleterious(0.03) probably_damaging(0.944) TCGA-VQ-A8PS-01 7 18705956 18705956 A T HDAC9 Missense_Mutation p.T530S 0.29 tolerated(0.72) benign(0.009) TCGA-VQ-A8PS-01 7 18705957 18705957 C A HDAC9 Missense_Mutation p.T530N 0.28 tolerated(0.48) benign(0.113) TCGA-VQ-A8PS-01 8 144332741 144332741 C T ZFP41 3'UTR 0.33 TCGA-VQ-A8PS-01 8 26238245 26238245 C T BNIP3L 5'Flank 0.36 TCGA-VQ-A8PS-01 9 139912260 139912260 C T ABCA2 Silent p.E730E 0.24 TCGA-VQ-A8PS-01 X 37931354 37931354 C T SYTL5 Silent p.F128F 0.54 TCGA-VQ-A8PS-01 X 73072012 73072012 G A XIST RNA 0.31 TCGA-VQ-A8PT-01 10 100018937 100018937 G T LOXL4 Silent p.T250T 0.21 TCGA-VQ-A8PT-01 10 101292989 101292989 C T NKX2-3 Missense_Mutation p.A34V 0.30 tolerated(0.12) benign(0.045) TCGA-VQ-A8PT-01 10 101564029 101564029 A G ABCC2 Missense_Mutation p.Q488R 0.51 deleterious(0) probably_damaging(0.99) TCGA-VQ-A8PT-01 10 102255226 102255226 G A SEC31B Silent p.F796F 0.21 TCGA-VQ-A8PT-01 10 102256083 102256083 C T SEC31B Missense_Mutation p.A748T 0.28 deleterious(0) possibly_damaging(0.901) TCGA-VQ-A8PT-01 10 102896571 102896571 G A TLX1 Silent p.V298V 0.36 TCGA-VQ-A8PT-01 10 102896713 102896713 G A TLX1 3'UTR 0.26 TCGA-VQ-A8PT-01 10 103296361 103296361 C T BTRC Missense_Mutation p.R510C 0.31 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PT-01 10 103766310 103766310 C T C10orf76 Silent p.P345P 0.35 TCGA-VQ-A8PT-01 10 104140329 104140329 A G GBF1 Missense_Mutation p.S1686G 0.35 tolerated(0.36) benign(0.001) TCGA-VQ-A8PT-01 10 104356960 104356960 G A SUFU Missense_Mutation p.A274T 0.37 tolerated(0.83) benign(0.032) TCGA-VQ-A8PT-01 10 104390037 104390037 C T SUFU 3'UTR 0.30 TCGA-VQ-A8PT-01 10 104416778 104416778 C - TRIM8 Frame_Shift_Del p.P443Hfs*107 0.33 TCGA-VQ-A8PT-01 10 104679493 104679493 G A CNNM2 Missense_Mutation p.R419Q 0.35 deleterious(0) possibly_damaging(0.824) TCGA-VQ-A8PT-01 10 105362388 105362388 C T SH3PXD2A Missense_Mutation p.A835T 0.40 deleterious(0) possibly_damaging(0.671) TCGA-VQ-A8PT-01 10 108377916 108377916 C T SORCS1 Missense_Mutation p.A971T 0.50 tolerated(0.42) benign(0.217) TCGA-VQ-A8PT-01 10 111893350 111893350 A - ADD3 Frame_Shift_Del p.K701Rfs*8 0.30 TCGA-VQ-A8PT-01 10 112257894 112257894 G A DUSP5 Silent p.S5S 0.44 TCGA-VQ-A8PT-01 10 112352971 112352971 T C SMC3 Silent p.I651I 0.39 TCGA-VQ-A8PT-01 10 112838301 112838301 C T ADRA2A Missense_Mutation p.P183S 0.21 deleterious(0.01) benign(0.032) TCGA-VQ-A8PT-01 10 114925329 114925329 C T TCF7L2 Silent p.C469C 0.39 TCGA-VQ-A8PT-01 10 1149689 1149689 G - WDR37 Frame_Shift_Del p.K294Sfs*4 0.33 TCGA-VQ-A8PT-01 10 115609393 115609393 T C DCLRE1A Missense_Mutation p.S491G 0.24 tolerated(0.25) benign(0.009) TCGA-VQ-A8PT-01 10 118100294 118100294 C T CCDC172 Missense_Mutation p.H72Y 0.29 tolerated(0.13) benign(0.005) TCGA-VQ-A8PT-01 10 119017345 119017345 G T SLC18A2 Silent p.L311L 0.54 TCGA-VQ-A8PT-01 10 120514110 120514110 C - CACUL1 Frame_Shift_Del p.Q56Sfs*32 0.53 TCGA-VQ-A8PT-01 10 120514305 120514305 C T CACUL1 5'UTR 0.31 TCGA-VQ-A8PT-01 10 123988903 123988903 A G TACC2 Missense_Mutation p.S2647G 0.33 possibly_damaging(0.776) TCGA-VQ-A8PT-01 10 124358525 124358525 A G DMBT1 Silent p.G1064G 0.34 TCGA-VQ-A8PT-01 10 125426153 125426153 G A GPR26 Missense_Mutation p.R77H 0.58 tolerated(0.54) benign(0.022) TCGA-VQ-A8PT-01 10 133930627 133930627 G A JAKMIP3 Missense_Mutation p.R61H 0.46 deleterious(0) probably_damaging(0.954) TCGA-VQ-A8PT-01 10 134884456 134884456 G A GPR123 Silent p.S8S 0.48 TCGA-VQ-A8PT-01 10 135083998 135083998 C T ADAM8 Missense_Mutation p.V551I 0.33 tolerated(0.61) benign(0.014) TCGA-VQ-A8PT-01 10 135179568 135179568 T C ECHS1 Silent p.T217T 0.40 TCGA-VQ-A8PT-01 10 16794642 16794642 C A RSU1 Missense_Mutation p.R165M 0.49 deleterious(0) probably_damaging(1) TCGA-VQ-A8PT-01 10 16949569 16949569 A - CUBN Frame_Shift_Del p.F2548Sfs*50 0.29 TCGA-VQ-A8PT-01 10 26465665 26465666 - A MYO3A Frame_Shift_Ins p.L1446Ifs*3 0.27 TCGA-VQ-A8PT-01 10 26575375 26575375 C T GAD2 Silent p.C446C 0.32 TCGA-VQ-A8PT-01 10 27329038 27329038 T - ANKRD26 Frame_Shift_Del p.N744Ifs*8 0.40 TCGA-VQ-A8PT-01 10 28196687 28196687 C A ARMC4 Nonsense_Mutation p.G839* 0.33 TCGA-VQ-A8PT-01 10 28233169 28233169 G A ARMC4 Silent p.H575H 0.50 TCGA-VQ-A8PT-01 10 295042 295042 T - ZMYND11 Intron 0.33 TCGA-VQ-A8PT-01 10 29760116 29760116 C - SVIL Frame_Shift_Del p.M1863Wfs*44 0.33 TCGA-VQ-A8PT-01 10 29801769 29801769 G A SVIL Silent p.S1137S 0.26 TCGA-VQ-A8PT-01 10 35928606 35928606 G A FZD8 Silent p.A584A 0.43 TCGA-VQ-A8PT-01 10 45938972 45938972 C T ALOX5 Silent p.G520G 0.42 TCGA-VQ-A8PT-01 10 46122523 46122523 G A ZFAND4 Missense_Mutation p.P250S 0.32 deleterious(0.03) probably_damaging(0.958) TCGA-VQ-A8PT-01 10 47087622 47087622 C A NPY4R Missense_Mutation p.P280H 0.31 deleterious(0) probably_damaging(1) TCGA-VQ-A8PT-01 10 48388120 48388120 T C RBP3 Missense_Mutation p.M920V 0.39 tolerated(0.08) benign(0.019) TCGA-VQ-A8PT-01 10 49459614 49459614 C T FRMPD2 Missense_Mutation p.R49H 0.34 tolerated(0.71) benign(0.004) TCGA-VQ-A8PT-01 10 50530788 50530788 T - C10orf71 Frame_Shift_Del p.H68Tfs*66 0.26 TCGA-VQ-A8PT-01 10 50827872 50827872 G - CHAT Frame_Shift_Del p.A164Pfs*36 0.32 TCGA-VQ-A8PT-01 10 51464822 51464822 C T AGAP7 Missense_Mutation p.R545H 0.31 tolerated(0.09) benign(0.098) TCGA-VQ-A8PT-01 10 52087064 52087066 TCT - SGMS1 In_Frame_Del p.R214del 0.39 TCGA-VQ-A8PT-01 10 61873993 61873993 T C ANK3 Missense_Mutation p.I980V 0.25 benign(0.001) TCGA-VQ-A8PT-01 10 63851889 63851889 G A ARID5B Silent p.L889L 0.38 TCGA-VQ-A8PT-01 10 64159513 64159513 A - ZNF365 Intron 0.29 TCGA-VQ-A8PT-01 10 64952698 64952699 - T JMJD1C Frame_Shift_Ins p.E2026Rfs*8 0.34 TCGA-VQ-A8PT-01 10 68139032 68139032 G A CTNNA3 Missense_Mutation p.A537V 0.41 deleterious(0.04) unknown(0) TCGA-VQ-A8PT-01 10 70641846 70641846 G A STOX1 Missense_Mutation p.R148H 0.42 tolerated(1) benign(0) TCGA-VQ-A8PT-01 10 70673882 70673882 A - DDX50 Frame_Shift_Del p.K339Nfs*3 0.30 TCGA-VQ-A8PT-01 10 70706258 70706258 C T DDX50 Nonsense_Mutation p.R696* 0.39 TCGA-VQ-A8PT-01 10 72299505 72299505 C - PALD1 Frame_Shift_Del p.R634Efs*61 0.21 TCGA-VQ-A8PT-01 10 73053291 73053291 C T UNC5B Silent p.I634I 0.40 TCGA-VQ-A8PT-01 10 7327916 7327916 G T SFMBT2 Missense_Mutation p.A146E 0.31 tolerated(0.06) probably_damaging(0.944) TCGA-VQ-A8PT-01 10 75011595 75011595 G A MRPS16 Missense_Mutation p.A67V 0.31 tolerated(0.1) possibly_damaging(0.816) TCGA-VQ-A8PT-01 10 75451802 75451802 T C AGAP5 Missense_Mutation p.H132R 0.10 deleterious_low_confidence(0) benign(0.027) TCGA-VQ-A8PT-01 10 79565446 79565446 C T DLG5 Missense_Mutation p.S1714N 0.46 tolerated(0.25) benign(0) TCGA-VQ-A8PT-01 10 80975972 80975972 G A ZMIZ1 Missense_Mutation p.G74D 0.10 probably_damaging(0.999) TCGA-VQ-A8PT-01 10 81037008 81037008 C T ZMIZ1 Silent p.S117S 0.34 TCGA-VQ-A8PT-01 10 84744959 84744959 G T NRG3 Silent p.L563L 0.35 TCGA-VQ-A8PT-01 10 86131146 86131146 G T CCSER2 Missense_Mutation p.G113V 0.24 deleterious(0) possibly_damaging(0.474) TCGA-VQ-A8PT-01 10 88676967 88676967 G A BMPR1A Missense_Mutation p.G251D 0.28 deleterious(0) probably_damaging(0.982) TCGA-VQ-A8PT-01 10 89720666 89720666 T - PTEN Frame_Shift_Del p.W274Gfs*2 0.23 TCGA-VQ-A8PT-01 10 89720812 89720812 A - PTEN Frame_Shift_Del p.N323Mfs*21 0.33 TCGA-VQ-A8PT-01 10 90966293 90966293 A G CH25H Missense_Mutation p.Y253H 0.37 tolerated(0.21) probably_damaging(0.982) TCGA-VQ-A8PT-01 10 94834919 94834919 G A CYP26A1 Missense_Mutation p.R240Q 0.25 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PT-01 10 97096333 97096333 C A SORBS1 Missense_Mutation p.R1195L 0.41 tolerated_low_confidence(0.79) benign(0) TCGA-VQ-A8PT-01 10 97471723 97471723 A G ENTPD1 Missense_Mutation p.T4A 0.30 tolerated_low_confidence(0.54) benign(0) TCGA-VQ-A8PT-01 10 98742049 98742049 C T C10orf12 Missense_Mutation p.T301M 0.43 tolerated(0.3) benign(0.072) TCGA-VQ-A8PT-01 10 98762518 98762518 G A SLIT1 Missense_Mutation p.A1366V 0.49 deleterious(0.04) benign(0.05) TCGA-VQ-A8PT-01 10 99116865 99116865 C A RRP12 Missense_Mutation p.D1294Y 0.23 deleterious(0.03) benign(0.139) TCGA-VQ-A8PT-01 10 99330008 99330008 C - UBTD1 Frame_Shift_Del p.E140Sfs*12 0.28 TCGA-VQ-A8PT-01 10 99625491 99625491 C A GOLGA7B 3'UTR 0.54 TCGA-VQ-A8PT-01 11 1017340 1017340 G T MUC6 Missense_Mutation p.Q1821K 0.09 benign(0.052) TCGA-VQ-A8PT-01 11 102272357 102272357 C T TMEM123 Missense_Mutation p.G172D 0.30 deleterious(0.03) probably_damaging(0.969) TCGA-VQ-A8PT-01 11 107427651 107427651 G A ALKBH8 Silent p.L70L 0.36 TCGA-VQ-A8PT-01 11 109294438 109294438 G A C11orf87 Missense_Mutation p.A27T 0.41 tolerated_low_confidence(0.22) possibly_damaging(0.495) TCGA-VQ-A8PT-01 11 110108290 110108290 C T RDX Missense_Mutation p.R393H 0.32 tolerated(0.06) probably_damaging(0.961) TCGA-VQ-A8PT-01 11 110450916 110450917 - T ARHGAP20 Frame_Shift_Ins p.N918Kfs*3 0.31 TCGA-VQ-A8PT-01 11 111250048 111250048 C T POU2AF1 5'UTR 0.38 TCGA-VQ-A8PT-01 11 111904183 111904183 A - DLAT Frame_Shift_Del p.V242Wfs*5 0.38 TCGA-VQ-A8PT-01 11 113200641 113200641 G T TTC12 Splice_Site p.X149_splice 0.34 TCGA-VQ-A8PT-01 11 113210097 113210097 G A TTC12 Missense_Mutation p.V243M 0.38 tolerated(0.19) benign(0.068) TCGA-VQ-A8PT-01 11 115049383 115049383 G A CADM1 Silent p.R397R 0.36 TCGA-VQ-A8PT-01 11 115110994 115110994 G A CADM1 Missense_Mutation p.P91S 0.31 deleterious(0.05) possibly_damaging(0.769) TCGA-VQ-A8PT-01 11 116707832 116707832 G - APOA1 Frame_Shift_Del p.Q29Rfs*7 0.27 TCGA-VQ-A8PT-01 11 117079656 117079656 T C PCSK7 Missense_Mutation p.S550G 0.20 deleterious(0.01) probably_damaging(0.983) TCGA-VQ-A8PT-01 11 117098996 117098996 C A PCSK7 Missense_Mutation p.G180V 0.43 deleterious(0) probably_damaging(0.988) TCGA-VQ-A8PT-01 11 117389380 117389380 G - DSCAML1 Frame_Shift_Del p.T498Rfs*33 0.33 TCGA-VQ-A8PT-01 11 118210591 118210591 G A CD3D Missense_Mutation p.A102V 0.39 tolerated(0.09) benign(0.338) TCGA-VQ-A8PT-01 11 119057183 119057183 T - PDZD3 Intron 0.30 TCGA-VQ-A8PT-01 11 119058047 119058047 C T PDZD3 Silent p.D133D 0.50 TCGA-VQ-A8PT-01 11 121476124 121476124 A C SORL1 Missense_Mutation p.S1598R 0.35 deleterious(0.03) possibly_damaging(0.47) TCGA-VQ-A8PT-01 11 122526825 122526825 C - UBASH3B Frame_Shift_Del p.R25Gfs*76 0.23 TCGA-VQ-A8PT-01 11 125351474 125351474 C T FEZ1 Missense_Mutation p.D123N 0.42 tolerated(0.5) benign(0.007) TCGA-VQ-A8PT-01 11 130060441 130060441 C T ST14 Missense_Mutation p.R243C 0.41 tolerated(0.15) possibly_damaging(0.849) TCGA-VQ-A8PT-01 11 134251868 134251868 G A B3GAT1 Silent p.G323G 0.31 TCGA-VQ-A8PT-01 11 14316397 14316397 C T RRAS2 Missense_Mutation p.A70T 0.26 deleterious(0) possibly_damaging(0.857) TCGA-VQ-A8PT-01 11 14665689 14665689 C A PDE3B Missense_Mutation p.P23H 0.20 deleterious(0) benign(0.366) TCGA-VQ-A8PT-01 11 15197495 15197495 C T INSC Missense_Mutation p.R136C 0.25 tolerated(0.07) possibly_damaging(0.729) TCGA-VQ-A8PT-01 11 19251461 19251461 G - E2F8 Frame_Shift_Del p.P478Qfs*2 0.30 TCGA-VQ-A8PT-01 11 26620466 26620466 C T ANO3 Missense_Mutation p.T531M 0.46 deleterious(0) possibly_damaging(0.844) TCGA-VQ-A8PT-01 11 27679492 27679492 T G BDNF Missense_Mutation p.Q289P 0.36 tolerated(0.07) possibly_damaging(0.574) TCGA-VQ-A8PT-01 11 3033422 3033422 C A CARS Intron 0.29 TCGA-VQ-A8PT-01 11 32611130 32611130 A - EIF3M Frame_Shift_Del p.K161Sfs*5 0.26 TCGA-VQ-A8PT-01 11 32635576 32635576 C T CCDC73 Missense_Mutation p.C763Y 0.34 tolerated(0.96) benign(0.103) TCGA-VQ-A8PT-01 11 33743943 33743943 C T CD59 Missense_Mutation p.A17T 0.46 deleterious(0.02) possibly_damaging(0.892) TCGA-VQ-A8PT-01 11 34473745 34473745 T C CAT Silent p.D157D 0.46 TCGA-VQ-A8PT-01 11 44639893 44639893 A G CD82 Missense_Mutation p.E207G 0.40 tolerated(0.3) benign(0.232) TCGA-VQ-A8PT-01 11 45832449 45832449 C T SLC35C1 Missense_Mutation p.L220F 0.35 deleterious(0.03) possibly_damaging(0.829) TCGA-VQ-A8PT-01 11 46407278 46407278 G - CHRM4 Frame_Shift_Del p.P277Rfs*69 0.21 TCGA-VQ-A8PT-01 11 47176729 47176729 T A C11orf49 Missense_Mutation p.I123N 0.35 deleterious(0) probably_damaging(0.963) TCGA-VQ-A8PT-01 11 47183217 47183217 C A C11orf49 3'UTR 0.36 TCGA-VQ-A8PT-01 11 47186906 47186907 CA - ARFGAP2 3'UTR 0.25 TCGA-VQ-A8PT-01 11 47269199 47269199 C T ACP2 Missense_Mutation p.R97Q 0.22 tolerated(0.14) possibly_damaging(0.699) TCGA-VQ-A8PT-01 11 47594711 47594711 C T KBTBD4 Missense_Mutation p.C459Y 0.30 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8PT-01 11 55038412 55038412 A T TRIM48 3'UTR 0.26 TCGA-VQ-A8PT-01 11 55038455 55038455 C A TRIM48 3'UTR 0.21 TCGA-VQ-A8PT-01 11 55371071 55371071 G - OR4C11 Frame_Shift_Del p.P260Rfs*28 0.28 TCGA-VQ-A8PT-01 11 55406645 55406645 T - OR4P4 Frame_Shift_Del p.Y273Ifs*15 0.33 TCGA-VQ-A8PT-01 11 55873345 55873345 T - OR8H2 Frame_Shift_Del p.Y278Ifs*4 0.27 TCGA-VQ-A8PT-01 11 55890271 55890271 C T OR8H3 Silent p.C141C 0.26 TCGA-VQ-A8PT-01 11 56086086 56086086 G A OR8K3 Missense_Mutation p.A102T 0.29 tolerated_low_confidence(0.15) benign(0.029) TCGA-VQ-A8PT-01 11 56230206 56230206 T C OR5M9 Silent p.L224L 0.42 TCGA-VQ-A8PT-01 11 563228 563228 C T RASSF7 Missense_Mutation p.R288C 0.36 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PT-01 11 56409226 56409226 G A OR5AP2 Silent p.A230A 0.34 TCGA-VQ-A8PT-01 11 5686428 5686428 C T TRIM5 Missense_Mutation p.V365M 0.31 deleterious(0) probably_damaging(0.987) TCGA-VQ-A8PT-01 11 57156154 57156154 T C PRG2 Missense_Mutation p.N132D 0.31 deleterious(0.01) possibly_damaging(0.887) TCGA-VQ-A8PT-01 11 57327882 57327884 CTT - UBE2L6 In_Frame_Del p.K17del 0.36 TCGA-VQ-A8PT-01 11 5776204 5776204 T C OR52N4 Silent p.S78S 0.42 TCGA-VQ-A8PT-01 11 5878660 5878660 G T OR52E8 Missense_Mutation p.F91L 0.26 tolerated(0.06) probably_damaging(0.999) TCGA-VQ-A8PT-01 11 59406569 59406570 - A PATL1 Frame_Shift_Ins p.S748Ffs*5 0.27 TCGA-VQ-A8PT-01 11 607466 607466 G A PHRF1 Silent p.A669A 0.30 TCGA-VQ-A8PT-01 11 61067532 61067532 C T DDB1 3'UTR 0.67 TCGA-VQ-A8PT-01 11 61254528 61254528 A - PPP1R32 Frame_Shift_Del p.K316Rfs*27 0.25 TCGA-VQ-A8PT-01 11 61539012 61539013 - C MYRF Frame_Shift_Ins p.S264Qfs*74 0.32 TCGA-VQ-A8PT-01 11 61732257 61732257 C T FTH1 Missense_Mutation p.G165D 0.47 deleterious(0.01) benign(0.025) TCGA-VQ-A8PT-01 11 62293647 62293647 C T AHNAK Missense_Mutation p.V2748M 0.36 benign(0.037) TCGA-VQ-A8PT-01 11 62300154 62300154 C T AHNAK Missense_Mutation p.A579T 0.31 benign(0.044) TCGA-VQ-A8PT-01 11 62300625 62300625 C T AHNAK Missense_Mutation p.V422I 0.30 benign(0.008) TCGA-VQ-A8PT-01 11 62532861 62532861 A T POLR2G Missense_Mutation p.Y128F 0.30 tolerated(0.5) benign(0.197) TCGA-VQ-A8PT-01 11 63403698 63403698 C - ATL3 Frame_Shift_Del p.G320Dfs*34 0.32 TCGA-VQ-A8PT-01 11 63672464 63672464 G - MARK2 Frame_Shift_Del p.A630Pfs*27 0.31 TCGA-VQ-A8PT-01 11 63963292 63963292 T - STIP1 Intron 0.12 TCGA-VQ-A8PT-01 11 64026541 64026541 C T PLCB3 Silent p.G450G 0.23 TCGA-VQ-A8PT-01 11 64527330 64527331 - T PYGM Frame_Shift_Ins p.I14Nfs*14 0.24 TCGA-VQ-A8PT-01 11 65108998 65108998 G T DPF2 Missense_Mutation p.G144C 0.24 deleterious(0.05) benign(0.336) TCGA-VQ-A8PT-01 11 65269601 65269601 A G MALAT1 RNA 0.27 TCGA-VQ-A8PT-01 11 65347615 65347615 C T EHBP1L1 Missense_Mutation p.P126S 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A8PT-01 11 65348594 65348594 G A EHBP1L1 Missense_Mutation p.A234T 0.41 deleterious(0.04) benign(0.079) TCGA-VQ-A8PT-01 11 65374290 65374290 G - MAP3K11 Intron 0.32 TCGA-VQ-A8PT-01 11 65618288 65618288 G A SNX32 Missense_Mutation p.A189T 0.38 tolerated(0.2) probably_damaging(0.957) TCGA-VQ-A8PT-01 11 65638100 65638100 C A EFEMP2 Missense_Mutation p.D133Y 0.25 deleterious(0.02) probably_damaging(0.963) TCGA-VQ-A8PT-01 11 6630004 6630005 GA - ILK Frame_Shift_Del p.E146Afs*43 0.25 TCGA-VQ-A8PT-01 11 66394093 66394093 A G RBM14 Missense_Mutation p.Y655C 0.46 deleterious(0) unknown(0) TCGA-VQ-A8PT-01 11 6643058 6643058 G A DCHS1 Silent p.S3283S 0.33 TCGA-VQ-A8PT-01 11 66620305 66620305 G T PC Missense_Mutation p.H506N 0.33 tolerated(0.63) benign(0.001) TCGA-VQ-A8PT-01 11 67430796 67430796 C T ALDH3B2 Missense_Mutation p.A350T 0.43 deleterious(0.01) benign(0.03) TCGA-VQ-A8PT-01 11 6898196 6898197 - T OR10A4 Frame_Shift_Ins p.G109Wfs*4 0.22 TCGA-VQ-A8PT-01 11 71502818 71502818 C T FAM86C1 Intron 0.39 TCGA-VQ-A8PT-01 11 71942180 71942180 C T INPPL1 Silent p.L482L 0.33 TCGA-VQ-A8PT-01 11 71948209 71948209 C - INPPL1 Frame_Shift_Del p.P976Hfs*155 0.41 TCGA-VQ-A8PT-01 11 72945595 72945595 C T P2RY2 Missense_Mutation p.R131W 0.38 deleterious(0) probably_damaging(1) TCGA-VQ-A8PT-01 11 73103469 73103469 C T RELT Missense_Mutation p.T194M 0.27 deleterious(0.04) probably_damaging(1) TCGA-VQ-A8PT-01 11 75151007 75151007 C T GDPD5 Splice_Site p.X492_splice 0.32 TCGA-VQ-A8PT-01 11 76869425 76869425 A T MYO7A Missense_Mutation p.I318F 0.27 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8PT-01 11 76891451 76891451 G A MYO7A Missense_Mutation p.R873Q 0.20 tolerated(0.15) probably_damaging(0.996) TCGA-VQ-A8PT-01 11 77590151 77590151 C T INTS4 Silent p.R912R 0.34 TCGA-VQ-A8PT-01 11 77911710 77911710 C - USP35 Frame_Shift_Del p.M354Wfs*119 0.35 TCGA-VQ-A8PT-01 11 8161538 8161539 - A RIC3 Frame_Shift_Ins p.L109Ffs*9 0.21 TCGA-VQ-A8PT-01 11 823582 823582 G A PNPLA2 Missense_Mutation p.R251Q 0.29 deleterious(0.02) benign(0.354) TCGA-VQ-A8PT-01 11 8284999 8284999 G T LMO1 5'UTR 0.38 TCGA-VQ-A8PT-01 11 85445271 85445272 - T SYTL2 Frame_Shift_Ins p.N366Kfs*15 0.27 TCGA-VQ-A8PT-01 11 9007344 9007344 G T NRIP3 Missense_Mutation p.P159H 0.28 deleterious(0) probably_damaging(0.994) TCGA-VQ-A8PT-01 11 94126704 94126704 C T GPR83 Silent p.T198T 0.33 TCGA-VQ-A8PT-01 11 9598183 9598183 G A WEE1 Silent p.K332K 0.38 TCGA-VQ-A8PT-01 12 100502183 100502184 - A UHRF1BP1L Frame_Shift_Ins p.C63Lfs*2 0.24 TCGA-VQ-A8PT-01 12 100806591 100806591 G A SLC17A8 Silent p.S410S 0.33 TCGA-VQ-A8PT-01 12 10147815 10147815 G A CLEC1B Missense_Mutation p.R157C 0.33 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PT-01 12 101505350 101505350 A G ANO4 Missense_Mutation p.Y736C 0.40 tolerated(0.1) probably_damaging(0.959) TCGA-VQ-A8PT-01 12 10150949 10150949 A G CLEC1B Missense_Mutation p.V32A 0.33 tolerated(0.17) benign(0.231) TCGA-VQ-A8PT-01 12 104067762 104067762 G T STAB2 Missense_Mutation p.G817C 0.34 deleterious(0) probably_damaging(0.992) TCGA-VQ-A8PT-01 12 104134464 104134464 C T STAB2 Silent p.C1937C 0.40 TCGA-VQ-A8PT-01 12 104476311 104476311 G - HCFC2 Frame_Shift_Del p.E269Kfs*21 0.26 TCGA-VQ-A8PT-01 12 105151584 105151584 G A CHST11 3'UTR 0.53 TCGA-VQ-A8PT-01 12 10525702 10525702 G A KLRK1 3'UTR 0.43 TCGA-VQ-A8PT-01 12 106633706 106633706 G A CKAP4 Missense_Mutation p.S302F 0.41 tolerated(0.15) benign(0.077) TCGA-VQ-A8PT-01 12 107415899 107415899 C T CRY1 Missense_Mutation p.R77H 0.42 deleterious(0.01) probably_damaging(0.945) TCGA-VQ-A8PT-01 12 107937802 107937802 C T BTBD11 Missense_Mutation p.A459V 0.41 tolerated(0.1) benign(0.032) TCGA-VQ-A8PT-01 12 108686093 108686093 C T CMKLR1 Missense_Mutation p.R216Q 0.42 deleterious(0.01) possibly_damaging(0.807) TCGA-VQ-A8PT-01 12 109629520 109629520 C T ACACB Silent p.N749N 0.27 TCGA-VQ-A8PT-01 12 110813977 110813977 C T ANAPC7 Missense_Mutation p.A502T 0.27 tolerated(0.45) benign(0.002) TCGA-VQ-A8PT-01 12 112321433 112321433 G A MAPKAPK5 Missense_Mutation p.G237R 0.40 deleterious(0) probably_damaging(1) TCGA-VQ-A8PT-01 12 112600941 112600941 C T HECTD4 Missense_Mutation p.R4196H 0.36 probably_damaging(0.996) TCGA-VQ-A8PT-01 12 112687978 112687978 C T HECTD4 Missense_Mutation p.R1161H 0.43 probably_damaging(0.977) TCGA-VQ-A8PT-01 12 113610164 113610164 G A DDX54 Missense_Mutation p.R425C 0.36 deleterious(0) probably_damaging(1) TCGA-VQ-A8PT-01 12 113753235 113753235 G A SLC8B1 Missense_Mutation p.P347L 0.56 tolerated(0.27) benign(0.116) TCGA-VQ-A8PT-01 12 11420996 11420996 G T PRB3 Missense_Mutation p.Q63K 0.37 tolerated(0.31) unknown(0) TCGA-VQ-A8PT-01 12 115112387 115112387 C T TBX3 Silent p.A451A 0.30 TCGA-VQ-A8PT-01 12 117426554 117426554 C A FBXW8 Silent p.A373A 0.32 TCGA-VQ-A8PT-01 12 117628127 117628127 G A FBXO21 Silent p.G45G 0.64 TCGA-VQ-A8PT-01 12 118677051 118677051 T C TAOK3 Silent p.S107S 0.24 TCGA-VQ-A8PT-01 12 1192505 1192507 TTC - ERC1 In_Frame_Del p.L284del 0.43 TCGA-VQ-A8PT-01 12 120149987 120149987 T C CIT Missense_Mutation p.D1617G 0.44 tolerated(0.16) benign(0.062) TCGA-VQ-A8PT-01 12 120650468 120650468 G A PXN Intron 0.42 TCGA-VQ-A8PT-01 12 120884178 120884178 C T TRIAP1 5'UTR 0.31 TCGA-VQ-A8PT-01 12 122217443 122217443 C T RHOF Silent p.A199A 0.36 TCGA-VQ-A8PT-01 12 122497091 122497091 T A BCL7A 3'UTR 0.46 TCGA-VQ-A8PT-01 12 123087620 123087620 A - KNTC1 Frame_Shift_Del p.K1646Nfs*2 0.30 TCGA-VQ-A8PT-01 12 123339628 123339628 G A HIP1R Missense_Mutation p.D269N 0.41 tolerated(1) probably_damaging(0.982) TCGA-VQ-A8PT-01 12 124172653 124172653 T C TCTN2 Missense_Mutation p.F274L 0.40 tolerated(0.62) benign(0.008) TCGA-VQ-A8PT-01 12 124398907 124398907 C T DNAH10 Missense_Mutation p.R3344W 0.34 probably_damaging(0.935) TCGA-VQ-A8PT-01 12 125437085 125437085 G A DHX37 Silent p.F909F 0.33 TCGA-VQ-A8PT-01 12 131283100 131283100 T - STX2 Frame_Shift_Del p.A253Lfs*14 0.28 TCGA-VQ-A8PT-01 12 13140051 13140051 G A HEBP1 Intron 0.31 TCGA-VQ-A8PT-01 12 132466724 132466724 G A EP400 Missense_Mutation p.V544M 0.28 unknown(0) TCGA-VQ-A8PT-01 12 133311108 133311108 C T ANKLE2 Missense_Mutation p.G585D 0.34 tolerated(0.4) benign(0.179) TCGA-VQ-A8PT-01 12 133374955 133374955 G A GOLGA3 Missense_Mutation p.R637C 0.35 deleterious(0) probably_damaging(1) TCGA-VQ-A8PT-01 12 133682824 133682824 A T ZNF140 Missense_Mutation p.S321C 0.40 deleterious(0) possibly_damaging(0.65) TCGA-VQ-A8PT-01 12 15656949 15656949 G T PTPRO Nonsense_Mutation p.G405* 0.39 TCGA-VQ-A8PT-01 12 2062365 2062365 C T DCP1B Silent p.P247P 0.29 TCGA-VQ-A8PT-01 12 20807120 20807120 T C PDE3A Silent p.C1055C 0.49 TCGA-VQ-A8PT-01 12 250440 250440 C T IQSEC3 Silent p.R714R 0.26 TCGA-VQ-A8PT-01 12 25101885 25101885 G T RP11-662I13.2 5'Flank 0.21 TCGA-VQ-A8PT-01 12 25272198 25272198 G A CASC1 Missense_Mutation p.P426L 0.38 deleterious(0) probably_damaging(0.994) TCGA-VQ-A8PT-01 12 2800300 2800300 C T CACNA1C Missense_Mutation p.R2166C 0.46 tolerated_low_confidence(0.18) benign(0) TCGA-VQ-A8PT-01 12 2929312 2929312 G A ITFG2 Missense_Mutation p.R156H 0.44 deleterious(0) probably_damaging(0.953) TCGA-VQ-A8PT-01 12 2929913 2929913 G - ITFG2 Frame_Shift_Del p.P192Hfs*7 0.38 TCGA-VQ-A8PT-01 12 32133955 32133955 T - KIAA1551 Frame_Shift_Del p.L24Cfs*5 0.27 TCGA-VQ-A8PT-01 12 32137055 32137055 T C KIAA1551 Missense_Mutation p.S1056P 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A8PT-01 12 32458797 32458797 G A BICD1 Missense_Mutation p.R249Q 0.29 deleterious(0.02) possibly_damaging(0.888) TCGA-VQ-A8PT-01 12 42554481 42554481 G A YAF2 Silent p.S175S 0.41 TCGA-VQ-A8PT-01 12 47181714 47181714 C A SLC38A4 Missense_Mutation p.G104V 0.46 deleterious(0) probably_damaging(0.992) TCGA-VQ-A8PT-01 12 4719362 4719362 A - DYRK4 Frame_Shift_Del p.R355Dfs*12 0.26 TCGA-VQ-A8PT-01 12 4920665 4920665 G A KCNA6 Silent p.A486A 0.42 TCGA-VQ-A8PT-01 12 49251992 49251992 T A RND1 Missense_Mutation p.E162D 0.28 tolerated(0.22) benign(0.083) TCGA-VQ-A8PT-01 12 49424741 49424741 G A KMT2D Nonsense_Mutation p.R4536* 0.43 TCGA-VQ-A8PT-01 12 49444252 49444254 GAA - KMT2D In_Frame_Del p.S1040del 0.32 TCGA-VQ-A8PT-01 12 49445040 49445041 - G KMT2D Frame_Shift_Ins p.Q809Pfs*3 0.23 TCGA-VQ-A8PT-01 12 49446696 49446696 A G KMT2D Splice_Site p.X371_splice 0.40 TCGA-VQ-A8PT-01 12 498235 498235 C - KDM5A Frame_Shift_Del p.G8Afs*58 0.39 TCGA-VQ-A8PT-01 12 49951789 49951789 C T KCNH3 3'UTR 0.27 TCGA-VQ-A8PT-01 12 50048766 50048766 A G FMNL3 Missense_Mutation p.V296A 0.27 deleterious(0.01) probably_damaging(0.938) TCGA-VQ-A8PT-01 12 51072574 51072574 G A DIP2B Silent p.L343L 0.37 TCGA-VQ-A8PT-01 12 51189738 51189738 G C ATF1 Missense_Mutation p.S47T 0.42 tolerated(0.18) benign(0.285) TCGA-VQ-A8PT-01 12 53517925 53517925 G A SOAT2 3'UTR 0.37 TCGA-VQ-A8PT-01 12 53817662 53817662 G - AMHR2 5'UTR 0.25 TCGA-VQ-A8PT-01 12 54756983 54756983 C T GPR84 Missense_Mutation p.R218Q 0.31 tolerated(0.26) benign(0.006) TCGA-VQ-A8PT-01 12 55039010 55039010 C - DCD Frame_Shift_Del p.G79Dfs*5 0.28 TCGA-VQ-A8PT-01 12 55641552 55641552 G A OR6C74 Missense_Mutation p.G161S 0.31 tolerated_low_confidence(0.07) probably_damaging(1) TCGA-VQ-A8PT-01 12 56488229 56488229 C T ERBB3 Missense_Mutation p.P583L 0.25 deleterious(0.04) benign(0.182) TCGA-VQ-A8PT-01 12 56572299 56572299 G A SMARCC2 Missense_Mutation p.T400M 0.34 deleterious(0.05) benign(0.105) TCGA-VQ-A8PT-01 12 56625165 56625165 A G SLC39A5 Missense_Mutation p.Q36R 0.38 tolerated(0.09) probably_damaging(0.985) TCGA-VQ-A8PT-01 12 56993514 56993514 T C BAZ2A Missense_Mutation p.D1717G 0.47 deleterious(0) probably_damaging(0.989) TCGA-VQ-A8PT-01 12 57873186 57873186 G T ARHGAP9 Missense_Mutation p.L2I 0.31 deleterious_low_confidence(0.01) benign(0.392) TCGA-VQ-A8PT-01 12 6138523 6138523 C T VWF Silent p.L984L 0.38 TCGA-VQ-A8PT-01 12 6438447 6438447 G A TNFRSF1A 3'UTR 0.33 TCGA-VQ-A8PT-01 12 6566658 6566658 C T TAPBPL Missense_Mutation p.P218S 0.50 deleterious(0.04) possibly_damaging(0.824) TCGA-VQ-A8PT-01 12 6650775 6650775 G A IFFO1 Missense_Mutation p.R497W 0.34 deleterious(0) probably_damaging(1) TCGA-VQ-A8PT-01 12 6933136 6933136 G A GPR162 Silent p.G24G 0.35 TCGA-VQ-A8PT-01 12 6933821 6933821 C T GPR162 Missense_Mutation p.R253W 0.35 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PT-01 12 7173239 7173239 A - C1S Frame_Shift_Del p.K281Rfs*39 0.29 TCGA-VQ-A8PT-01 12 76739650 76739650 G A BBS10 Silent p.I705I 0.25 TCGA-VQ-A8PT-01 12 81472138 81472138 C A ACSS3 Missense_Mutation p.A80D 0.37 deleterious(0) probably_damaging(0.954) TCGA-VQ-A8PT-01 12 90005142 90005142 T C ATP2B1 Missense_Mutation p.D692G 0.40 tolerated(0.13) benign(0.108) TCGA-VQ-A8PT-01 12 9085343 9085343 A G PHC1 Silent p.Q430Q 0.35 TCGA-VQ-A8PT-01 12 91347369 91347369 A - CCER1 Frame_Shift_Del p.L384* 0.24 TCGA-VQ-A8PT-01 12 92814867 92814867 G A CLLU1OS Silent p.G75G 0.38 TCGA-VQ-A8PT-01 12 94972285 94972285 T C TMCC3 Missense_Mutation p.Q339R 0.24 deleterious(0) probably_damaging(0.994) TCGA-VQ-A8PT-01 12 94975741 94975741 C T TMCC3 Missense_Mutation p.D218N 0.28 deleterious(0.02) probably_damaging(1) TCGA-VQ-A8PT-01 12 95478299 95478299 C A FGD6 Missense_Mutation p.A1411S 0.31 deleterious(0.02) probably_damaging(0.968) TCGA-VQ-A8PT-01 12 96728556 96728556 T G CDK17 Missense_Mutation p.E20A 0.22 deleterious_low_confidence(0.02) benign(0.37) TCGA-VQ-A8PT-01 13 100909900 100909900 G A PCCA Missense_Mutation p.R230H 0.14 deleterious(0) possibly_damaging(0.851) TCGA-VQ-A8PT-01 13 101278121 101278121 T C TMTC4 Missense_Mutation p.M538V 0.37 deleterious(0.01) possibly_damaging(0.66) TCGA-VQ-A8PT-01 13 103286381 103286381 G A TPP2 Silent p.T442T 0.38 TCGA-VQ-A8PT-01 13 109507798 109507798 T C MYO16 Missense_Mutation p.L397P 0.27 deleterious(0) probably_damaging(0.986) TCGA-VQ-A8PT-01 13 110802778 110802778 A C COL4A1 Missense_Mutation p.S1648A 0.46 unknown(0) TCGA-VQ-A8PT-01 13 20221102 20221103 AG - MPHOSPH8 Frame_Shift_Del p.R299Sfs*12 0.27 TCGA-VQ-A8PT-01 13 21296044 21296045 AG - IL17D Frame_Shift_Del p.Q187Rfs*46 0.42 TCGA-VQ-A8PT-01 13 21553861 21553861 A - LATS2 Frame_Shift_Del p.L914Wfs*10 0.21 TCGA-VQ-A8PT-01 13 24334281 24334281 C T MIPEP Missense_Mutation p.A642T 0.47 deleterious(0) probably_damaging(0.983) TCGA-VQ-A8PT-01 13 32915097 32915097 A G BRCA2 Missense_Mutation p.D2202G 0.37 tolerated(0.17) benign(0.107) TCGA-VQ-A8PT-01 13 33634910 33634910 C T KL Missense_Mutation p.T565I 0.34 tolerated(0.21) benign(0.016) TCGA-VQ-A8PT-01 13 36776105 36776105 C T SOHLH2 Silent p.A135A 0.30 TCGA-VQ-A8PT-01 13 37567781 37567781 A G ALG5 Missense_Mutation p.V105A 0.35 deleterious(0) possibly_damaging(0.889) TCGA-VQ-A8PT-01 13 38211587 38211587 A G TRPC4 Missense_Mutation p.L801P 0.29 deleterious(0.05) possibly_damaging(0.848) TCGA-VQ-A8PT-01 13 40253691 40253691 T C COG6 Missense_Mutation p.L186P 0.48 deleterious(0) probably_damaging(0.993) TCGA-VQ-A8PT-01 13 42830439 42830439 C T FHP1 RNA 0.40 TCGA-VQ-A8PT-01 13 46287581 46287581 C T SPERT Missense_Mutation p.R141C 0.28 deleterious(0.04) probably_damaging(0.979) TCGA-VQ-A8PT-01 13 46357754 46357754 T C SIAH3 Missense_Mutation p.T192A 0.38 deleterious(0.02) probably_damaging(0.996) TCGA-VQ-A8PT-01 13 47224409 47224409 G A LRCH1 Silent p.L127L 0.23 TCGA-VQ-A8PT-01 13 52513267 52513267 G A ATP7B Missense_Mutation p.H1207Y 0.46 tolerated(0.57) benign(0.05) TCGA-VQ-A8PT-01 13 52598478 52598478 C T ALG11 Silent p.T204T 0.34 TCGA-VQ-A8PT-01 13 52701608 52701608 T C NEK5 Missense_Mutation p.Y4C 0.12 deleterious(0.02) benign(0.376) TCGA-VQ-A8PT-01 13 53422485 53422485 G A PCDH8 Silent p.S29S 0.30 TCGA-VQ-A8PT-01 13 58208649 58208649 C T PCDH17 Missense_Mutation p.P657S 0.23 tolerated(0.29) benign(0.326) TCGA-VQ-A8PT-01 13 61987430 61987430 G A PCDH20 Missense_Mutation p.R268C 0.36 deleterious(0.01) probably_damaging(0.959) TCGA-VQ-A8PT-01 13 67800275 67800275 C T PCDH9 Silent p.T766T 0.38 TCGA-VQ-A8PT-01 13 80911404 80911404 G A SPRY2 Missense_Mutation p.A146V 0.33 tolerated(0.69) benign(0.002) TCGA-VQ-A8PT-01 13 88328275 88328275 G T SLITRK5 Missense_Mutation p.R211L 0.33 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PT-01 13 88329729 88329729 C A SLITRK5 Missense_Mutation p.Q696K 0.25 tolerated(0.13) benign(0.103) TCGA-VQ-A8PT-01 13 92101014 92101014 G T GPC5 Splice_Site p.X55_splice 0.32 TCGA-VQ-A8PT-01 14 101200555 101200555 C - DLK1 Frame_Shift_Del p.P160Lfs*50 0.30 TCGA-VQ-A8PT-01 14 101490185 101490185 C T MIR299 RNA 0.44 TCGA-VQ-A8PT-01 14 102478658 102478658 G A DYNC1H1 Missense_Mutation p.D2289N 0.39 probably_damaging(0.996) TCGA-VQ-A8PT-01 14 103426012 103426013 - A CDC42BPB Frame_Shift_Ins p.E953* 0.27 TCGA-VQ-A8PT-01 14 103432702 103432702 G A CDC42BPB Missense_Mutation p.R832W 0.37 deleterious(0) possibly_damaging(0.816) TCGA-VQ-A8PT-01 14 104026527 104026528 - T BAG5 Frame_Shift_Ins p.N366Kfs*23 0.37 TCGA-VQ-A8PT-01 14 105174185 105174185 C - INF2 Frame_Shift_Del p.V530Wfs*28 0.60 TCGA-VQ-A8PT-01 14 105406621 105406621 C - AHNAK2 Frame_Shift_Del p.G5056Vfs*30 0.30 TCGA-VQ-A8PT-01 14 106208262 106208262 G A IGHG1 Missense_Mutation p.A213V 0.43 deleterious(0.04) benign(0.132) TCGA-VQ-A8PT-01 14 20344754 20344754 A T OR4K2 Missense_Mutation p.T110S 0.12 tolerated(0.68) benign(0.41) TCGA-VQ-A8PT-01 14 20502017 20502017 T - OR4K13 Frame_Shift_Del p.R301Dfs*? 0.38 TCGA-VQ-A8PT-01 14 20711447 20711447 A G OR11H4 Missense_Mutation p.Y166C 0.29 deleterious(0) probably_damaging(0.992) TCGA-VQ-A8PT-01 14 21498801 21498801 A G TPPP2 Missense_Mutation p.S21G 0.17 tolerated(0.16) benign(0.384) TCGA-VQ-A8PT-01 14 21876555 21876555 T G CHD8 Silent p.T882T 0.39 TCGA-VQ-A8PT-01 14 21993451 21993451 G A SALL2 Silent p.G137G 0.38 TCGA-VQ-A8PT-01 14 22038271 22038271 A G OR10G3 Missense_Mutation p.V202A 0.43 tolerated(0.43) probably_damaging(0.968) TCGA-VQ-A8PT-01 14 22090437 22090437 G A TRAV1-1 Splice_Site p.X15_splice 0.37 TCGA-VQ-A8PT-01 14 23240896 23240896 C T OXA1L 3'UTR 0.36 TCGA-VQ-A8PT-01 14 23354148 23354148 C T REM2 Silent p.S123S 0.39 TCGA-VQ-A8PT-01 14 23608664 23608665 - G SLC7A8 Frame_Shift_Ins p.Q294Pfs*38 0.23 TCGA-VQ-A8PT-01 14 23828092 23828092 G A EFS Missense_Mutation p.A415V 0.32 tolerated(0.31) benign(0.009) TCGA-VQ-A8PT-01 14 24027991 24027991 T C THTPA Missense_Mutation p.V212A 0.40 tolerated(1) benign(0.001) TCGA-VQ-A8PT-01 14 24529965 24529965 G T LRRC16B Silent p.A730A 0.27 TCGA-VQ-A8PT-01 14 24766042 24766042 T G DHRS1 Missense_Mutation p.S66R 0.19 deleterious(0.01) possibly_damaging(0.905) TCGA-VQ-A8PT-01 14 24774835 24774835 C T NOP9 3'UTR 0.35 TCGA-VQ-A8PT-01 14 24788576 24788576 C T ADCY4 Missense_Mutation p.A934T 0.37 deleterious(0.03) probably_damaging(0.999) TCGA-VQ-A8PT-01 14 24845789 24845789 C T NFATC4 Silent p.F845F 0.35 TCGA-VQ-A8PT-01 14 26939637 26939637 G A NOVA1 Intron 0.36 TCGA-VQ-A8PT-01 14 36004312 36004312 G A INSM2 Missense_Mutation p.R285H 0.37 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PT-01 14 37050614 37050614 G A NKX2-8 Silent p.S71S 0.36 TCGA-VQ-A8PT-01 14 42355952 42355952 C A LRFN5 Missense_Mutation p.L42I 0.27 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PT-01 14 44975563 44975563 G A FSCB Nonsense_Mutation p.Q210* 0.29 TCGA-VQ-A8PT-01 14 50808862 50808862 C T CDKL1 Missense_Mutation p.A149T 0.16 deleterious(0.01) probably_damaging(0.986) TCGA-VQ-A8PT-01 14 52472518 52472518 A G NID2 Missense_Mutation p.Y1352H 0.06 deleterious(0) probably_damaging(0.928) TCGA-VQ-A8PT-01 14 52481919 52481919 G - NID2 Frame_Shift_Del p.R1035Gfs*67 0.33 TCGA-VQ-A8PT-01 14 52734527 52734527 C T PTGDR 5'UTR 0.36 TCGA-VQ-A8PT-01 14 53386064 53386064 T - FERMT2 Frame_Shift_Del p.D57Ifs*17 0.18 TCGA-VQ-A8PT-01 14 55203898 55203898 T C SAMD4A Missense_Mutation p.L291P 0.35 deleterious(0.02) probably_damaging(0.959) TCGA-VQ-A8PT-01 14 56130731 56130731 T G KTN1 Missense_Mutation p.L1050R 0.27 deleterious(0) possibly_damaging(0.712) TCGA-VQ-A8PT-01 14 59113481 59113481 G A DACT1 Missense_Mutation p.A714T 0.39 tolerated(0.51) benign(0.003) TCGA-VQ-A8PT-01 14 59931062 59931062 A C GPR135 Missense_Mutation p.F295V 0.45 tolerated(0.1) benign(0.318) TCGA-VQ-A8PT-01 14 65194544 65194544 C A PLEKHG3 Silent p.S65S 0.45 TCGA-VQ-A8PT-01 14 70490057 70490057 C T SMOC1 Missense_Mutation p.A395V 0.34 tolerated(0.09) probably_damaging(0.999) TCGA-VQ-A8PT-01 14 71443705 71443707 CTT - PCNX In_Frame_Del p.F218del 0.23 TCGA-VQ-A8PT-01 14 73538375 73538375 G A RBM25 Missense_Mutation p.R9H 0.22 probably_damaging(0.948) TCGA-VQ-A8PT-01 14 73959249 73959249 C A HEATR4 Intron 0.33 TCGA-VQ-A8PT-01 14 73959719 73959719 T C HEATR4 Intron 0.43 TCGA-VQ-A8PT-01 14 75078330 75078330 C T LTBP2 Silent p.P106P 0.30 TCGA-VQ-A8PT-01 14 75248649 75248649 C - YLPM1 Frame_Shift_Del p.P636Lfs*11 0.25 TCGA-VQ-A8PT-01 14 75520262 75520263 AT - ACYP1 Frame_Shift_Del p.M62Afs*5 0.28 TCGA-VQ-A8PT-01 14 75537792 75537792 G T ZC2HC1C Missense_Mutation p.E172D 0.34 tolerated(0.25) benign(0.02) TCGA-VQ-A8PT-01 14 76621011 76621011 C T GPATCH2L Missense_Mutation p.A102V 0.32 tolerated(0.61) benign(0.137) TCGA-VQ-A8PT-01 14 77269818 77269818 C T ANGEL1 Missense_Mutation p.R505H 0.33 tolerated(0.26) benign(0.054) TCGA-VQ-A8PT-01 14 88934355 88934355 G A PTPN21 3'UTR 0.34 TCGA-VQ-A8PT-01 14 90651285 90651285 G - KCNK13 Frame_Shift_Del p.V391Wfs*7 0.26 TCGA-VQ-A8PT-01 14 91875075 91875075 G A CCDC88C Silent p.H66H 0.21 TCGA-VQ-A8PT-01 14 91948380 91948380 G T SMEK1 Missense_Mutation p.P152H 0.36 tolerated(0.07) probably_damaging(0.924) TCGA-VQ-A8PT-01 14 92624055 92624055 A - CPSF2 Frame_Shift_Del p.I552Sfs*5 0.19 TCGA-VQ-A8PT-01 14 93709014 93709015 - T BTBD7 Frame_Shift_Ins p.Q1002Tfs*5 0.27 TCGA-VQ-A8PT-01 14 93762466 93762466 C A BTBD7 5'UTR 0.43 TCGA-VQ-A8PT-01 14 94420705 94420705 C T ASB2 Missense_Mutation p.A146T 0.41 deleterious(0.02) possibly_damaging(0.449) TCGA-VQ-A8PT-01 14 95090059 95090059 C T SERPINA3 Missense_Mutation p.R394C 0.28 tolerated(0.1) benign(0.007) TCGA-VQ-A8PT-01 14 95108201 95108201 A G SERPINA13P RNA 0.33 TCGA-VQ-A8PT-01 14 96730101 96730101 A C BDKRB1 Missense_Mutation p.N28H 0.25 tolerated(0.13) benign(0.336) TCGA-VQ-A8PT-01 14 96949543 96949543 G A AK7 Missense_Mutation p.R654H 0.27 deleterious(0.05) possibly_damaging(0.603) TCGA-VQ-A8PT-01 15 101567506 101567506 C T LRRK1 Nonsense_Mutation p.R816* 0.35 TCGA-VQ-A8PT-01 15 101775373 101775373 G A CHSY1 Missense_Mutation p.R244W 0.32 deleterious(0) probably_damaging(0.932) TCGA-VQ-A8PT-01 15 20169923 20169923 T C IGHV1OR15-9 Missense_Mutation p.R117G 0.40 deleterious(0) probably_damaging(0.976) TCGA-VQ-A8PT-01 15 25227196 25227196 A - SNRPN 3'Flank 0.31 TCGA-VQ-A8PT-01 15 25326309 25326309 C T SNORD116-12 3'Flank 0.24 TCGA-VQ-A8PT-01 15 28202821 28202821 C T OCA2 Missense_Mutation p.R566H 0.43 deleterious(0.02) benign(0.378) TCGA-VQ-A8PT-01 15 28443895 28443895 G A HERC2 Silent p.C2579C 0.36 TCGA-VQ-A8PT-01 15 28459002 28459002 C T HERC2 Missense_Mutation p.M2224I 0.34 benign(0) TCGA-VQ-A8PT-01 15 33927942 33927942 C T RYR3 Silent p.V1101V 0.44 TCGA-VQ-A8PT-01 15 34395159 34395159 C T PGBD4 Nonsense_Mutation p.R143* 0.33 TCGA-VQ-A8PT-01 15 34640542 34640542 C T NUTM1 Missense_Mutation p.A130V 0.46 tolerated(0.07) benign(0.145) TCGA-VQ-A8PT-01 15 39910317 39910317 C T FSIP1 Missense_Mutation p.V440M 0.35 tolerated(0.1) benign(0.003) TCGA-VQ-A8PT-01 15 40864011 40864011 G T RPUSD2 Missense_Mutation p.R272L 0.33 deleterious(0) probably_damaging(1) TCGA-VQ-A8PT-01 15 41224520 41224520 G A DLL4 Missense_Mutation p.R242H 0.42 deleterious(0.01) probably_damaging(0.992) TCGA-VQ-A8PT-01 15 41815042 41815042 G T RPAP1 Missense_Mutation p.A888D 0.39 tolerated(0.44) possibly_damaging(0.478) TCGA-VQ-A8PT-01 15 42701563 42701563 G A CAPN3 Silent p.K659K 0.47 TCGA-VQ-A8PT-01 15 43525417 43525417 C A TGM5 Missense_Mutation p.R712M 0.33 tolerated(0.06) possibly_damaging(0.83) TCGA-VQ-A8PT-01 15 43653333 43653333 G T ZSCAN29 Missense_Mutation p.L833I 0.42 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PT-01 15 44057695 44057695 A G PDIA3 Missense_Mutation p.D217G 0.35 deleterious(0.01) possibly_damaging(0.739) TCGA-VQ-A8PT-01 15 44877970 44877970 G A SPG11 Missense_Mutation p.T1662I 0.33 tolerated(0.05) possibly_damaging(0.682) TCGA-VQ-A8PT-01 15 48441396 48441397 TC - MYEF2 Frame_Shift_Del p.R517Nfs*16 0.25 TCGA-VQ-A8PT-01 15 48782244 48782244 G A FBN1 Silent p.Y962Y 0.47 TCGA-VQ-A8PT-01 15 50853984 50853984 G A TRPM7 Missense_Mutation p.T1830M 0.43 deleterious_low_confidence(0) probably_damaging(0.961) TCGA-VQ-A8PT-01 15 51014347 51014347 T C SPPL2A Missense_Mutation p.Y434C 0.38 deleterious(0.02) benign(0.004) TCGA-VQ-A8PT-01 15 51975303 51975303 A - SCG3 Frame_Shift_Del p.T57Hfs*19 0.28 TCGA-VQ-A8PT-01 15 52194217 52194217 A - TMOD3 Frame_Shift_Del p.N338Tfs*4 0.21 TCGA-VQ-A8PT-01 15 52662498 52662498 C A MYO5A Silent p.A978A 0.32 TCGA-VQ-A8PT-01 15 52668563 52668563 G A MYO5A Missense_Mutation p.R801W 0.39 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8PT-01 15 52676394 52676394 T C MYO5A Silent p.Q626Q 0.39 TCGA-VQ-A8PT-01 15 56130789 56130789 T C NEDD4 Missense_Mutation p.Y1029C 0.26 deleterious(0) probably_damaging(1) TCGA-VQ-A8PT-01 15 56924168 56924168 T - ZNF280D Frame_Shift_Del p.N823Tfs*29 0.26 TCGA-VQ-A8PT-01 15 65370092 65370092 G A KBTBD13 Silent p.R313R 0.50 TCGA-VQ-A8PT-01 15 65499312 65499312 G A CILP Missense_Mutation p.R78C 0.53 deleterious(0) possibly_damaging(0.863) TCGA-VQ-A8PT-01 15 67528390 67528390 T - AAGAB Frame_Shift_Del p.A127Lfs*13 0.17 TCGA-VQ-A8PT-01 15 72612107 72612107 C T CELF6 Missense_Mutation p.A37T 0.39 tolerated(0.78) benign(0.026) TCGA-VQ-A8PT-01 15 73590875 73590875 C T NEO1 Missense_Mutation p.A1363V 0.39 deleterious(0) probably_damaging(0.985) TCGA-VQ-A8PT-01 15 74476214 74476214 G - STRA6 Frame_Shift_Del p.T467Kfs*50 0.26 TCGA-VQ-A8PT-01 15 74738537 74738537 C T UBL7 Missense_Mutation p.R346H 0.37 tolerated(0.3) possibly_damaging(0.714) TCGA-VQ-A8PT-01 15 76205551 76205551 G A FBXO22 Missense_Mutation p.R96H 0.32 tolerated(0.78) benign(0) TCGA-VQ-A8PT-01 15 77134187 77134187 C T SCAPER Missense_Mutation p.R94Q 0.39 deleterious(0.01) possibly_damaging(0.873) TCGA-VQ-A8PT-01 15 78768547 78768547 A G IREB2 Silent p.G347G 0.32 TCGA-VQ-A8PT-01 15 81595990 81595990 C T IL16 Missense_Mutation p.T1140M 0.43 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8PT-01 15 82336174 82336174 C - MEX3B Frame_Shift_Del p.G346Efs*181 0.33 TCGA-VQ-A8PT-01 15 83455794 83455794 G T FSD2 Missense_Mutation p.Q117K 0.41 tolerated(0.1) benign(0.009) TCGA-VQ-A8PT-01 15 83932063 83932063 C A BNC1 Missense_Mutation p.R647M 0.35 tolerated(0.27) possibly_damaging(0.503) TCGA-VQ-A8PT-01 15 83935683 83935683 G A BNC1 Missense_Mutation p.R114W 0.38 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PT-01 15 89074039 89074039 G A DET1 Silent p.L311L 0.07 TCGA-VQ-A8PT-01 15 89401350 89401352 AAG - ACAN In_Frame_Del p.E1848del 0.28 TCGA-VQ-A8PT-01 15 89745030 89745030 C T ABHD2 3'UTR 0.48 TCGA-VQ-A8PT-01 15 90210368 90210368 T C PLIN1 Silent p.A336A 0.43 TCGA-VQ-A8PT-01 15 91432748 91432748 T C FES Missense_Mutation p.S270P 0.43 deleterious(0.03) possibly_damaging(0.883) TCGA-VQ-A8PT-01 15 92669380 92669380 C T SLCO3A1 Missense_Mutation p.R422W 0.33 deleterious(0) probably_damaging(0.956) TCGA-VQ-A8PT-01 16 11272530 11272530 G T CLEC16A Missense_Mutation p.G1049C 0.48 deleterious_low_confidence(0.01) benign(0.376) TCGA-VQ-A8PT-01 16 1129692 1129692 C T SSTR5 Missense_Mutation p.A275V 0.26 tolerated(0.58) benign(0.003) TCGA-VQ-A8PT-01 16 11773287 11773287 C T TXNDC11 Missense_Mutation p.A881T 0.38 deleterious(0) probably_damaging(0.992) TCGA-VQ-A8PT-01 16 1270496 1270496 C - CACNA1H Frame_Shift_Del p.C2191Afs*26 0.46 TCGA-VQ-A8PT-01 16 1306515 1306515 A G TPSD1 Splice_Site p.X28_splice 0.26 TCGA-VQ-A8PT-01 16 1307017 1307017 G C TPSD1 Silent p.P158P 0.21 TCGA-VQ-A8PT-01 16 1399402 1399402 G A TSR3 3'UTR 0.40 TCGA-VQ-A8PT-01 16 14334386 14334386 T - MKL2 Intron 0.19 TCGA-VQ-A8PT-01 16 15813160 15813160 G A MYH11 Silent p.L1703L 0.38 TCGA-VQ-A8PT-01 16 18554975 18554975 C T NOMO2 Silent p.V233V 0.41 TCGA-VQ-A8PT-01 16 2130221 2130221 C T TSC2 Silent p.G1151G 0.36 TCGA-VQ-A8PT-01 16 2160936 2160936 C T PKD1 Missense_Mutation p.R1411H 0.42 benign(0.077) TCGA-VQ-A8PT-01 16 2234817 2234817 C T CASKIN1 Silent p.E459E 0.27 TCGA-VQ-A8PT-01 16 2260591 2260591 G C BRICD5 Missense_Mutation p.L38V 0.47 tolerated(0.43) probably_damaging(0.978) TCGA-VQ-A8PT-01 16 24582990 24582990 A G RBBP6 Missense_Mutation p.S1535G 0.33 deleterious_low_confidence(0) unknown(0) TCGA-VQ-A8PT-01 16 24918027 24918027 C A SLC5A11 Missense_Mutation p.N352K 0.29 deleterious(0.04) probably_damaging(0.973) TCGA-VQ-A8PT-01 16 2521880 2521880 G A NTN3 Missense_Mutation p.G60R 0.45 deleterious(0) possibly_damaging(0.888) TCGA-VQ-A8PT-01 16 27456597 27456597 G A IL21R Missense_Mutation p.R262K 0.35 deleterious(0.02) possibly_damaging(0.779) TCGA-VQ-A8PT-01 16 28497735 28497735 G - CLN3 Frame_Shift_Del p.Q204Rfs*51 0.21 TCGA-VQ-A8PT-01 16 28497915 28497915 T C CLN3 Missense_Mutation p.T173A 0.27 tolerated(0.11) probably_damaging(0.999) TCGA-VQ-A8PT-01 16 28618168 28618168 C T SULT1A1 Missense_Mutation p.G170R 0.31 deleterious(0.02) possibly_damaging(0.791) TCGA-VQ-A8PT-01 16 2870969 2870969 C A PRSS21 Silent p.P188P 0.29 TCGA-VQ-A8PT-01 16 28878347 28878347 C A SH2B1 Missense_Mutation p.P311Q 0.39 deleterious(0) probably_damaging(1) TCGA-VQ-A8PT-01 16 28890058 28890058 G A ATP2A1 Silent p.T22T 0.36 TCGA-VQ-A8PT-01 16 29994977 29994977 G A TAOK2 Missense_Mutation p.A472T 0.45 tolerated(0.21) probably_damaging(0.981) TCGA-VQ-A8PT-01 16 30001059 30001059 C T TAOK2 3'Flank 0.29 TCGA-VQ-A8PT-01 16 3025632 3025632 G A PKMYT1 Missense_Mutation p.T187M 0.42 deleterious(0.04) benign(0.212) TCGA-VQ-A8PT-01 16 30408926 30408926 A - ZNF48 Frame_Shift_Del p.S120Afs*9 0.33 TCGA-VQ-A8PT-01 16 30409952 30409952 C T ZNF48 Missense_Mutation p.R461C 0.26 tolerated(0.06) probably_damaging(0.98) TCGA-VQ-A8PT-01 16 30410075 30410075 C T ZNF48 Missense_Mutation p.R502C 0.38 tolerated(0.06) benign(0.348) TCGA-VQ-A8PT-01 16 3071772 3071772 C - TNFRSF12A Frame_Shift_Del p.I114* 0.29 TCGA-VQ-A8PT-01 16 31120621 31120621 C T BCKDK Missense_Mutation p.A26V 0.47 tolerated_low_confidence(0.16) unknown(0) TCGA-VQ-A8PT-01 16 31476147 31476147 G A ARMC5 Silent p.A601A 0.52 TCGA-VQ-A8PT-01 16 3169648 3169648 G A ZNF205 Silent p.T329T 0.39 TCGA-VQ-A8PT-01 16 32890846 32890846 T C SLC6A10P RNA 0.26 TCGA-VQ-A8PT-01 16 3591866 3591866 C T NLRC3 Missense_Mutation p.A1099T 0.50 tolerated(0.11) benign(0.03) TCGA-VQ-A8PT-01 16 3722699 3722699 A G TRAP1 Splice_Site p.X389_splice 0.30 TCGA-VQ-A8PT-01 16 3777970 3777972 GTG - CREBBP In_Frame_Del p.P2359del 0.40 TCGA-VQ-A8PT-01 16 4312646 4312646 C T TFAP4 Missense_Mutation p.R49Q 0.35 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PT-01 16 46781736 46781736 C T MYLK3 Missense_Mutation p.A124T 0.48 deleterious(0.04) possibly_damaging(0.849) TCGA-VQ-A8PT-01 16 4748883 4748883 C T ANKS3 Missense_Mutation p.R490H 0.25 tolerated(0.09) possibly_damaging(0.479) TCGA-VQ-A8PT-01 16 4790207 4790207 A G C16orf71 Silent p.T110T 0.39 TCGA-VQ-A8PT-01 16 48139124 48139124 C T ABCC12 Missense_Mutation p.V867I 0.26 tolerated(1) benign(0.004) TCGA-VQ-A8PT-01 16 48231917 48231917 G A ABCC11 Missense_Mutation p.A760V 0.36 tolerated(0.25) benign(0.01) TCGA-VQ-A8PT-01 16 48385758 48385761 AAGG - LONP2 3'UTR 0.41 TCGA-VQ-A8PT-01 16 4896185 4896186 - A GLYR1 Frame_Shift_Ins p.W22Lfs*7 0.32 TCGA-VQ-A8PT-01 16 50102777 50102777 A G HEATR3 Missense_Mutation p.E133G 0.37 deleterious(0) possibly_damaging(0.776) TCGA-VQ-A8PT-01 16 50745775 50745775 C A NOD2 Silent p.A651A 0.36 TCGA-VQ-A8PT-01 16 53692705 53692705 T - RPGRIP1L Frame_Shift_Del p.K443Nfs*3 0.38 TCGA-VQ-A8PT-01 16 55690810 55690810 C T SLC6A2 Silent p.S68S 0.44 TCGA-VQ-A8PT-01 16 57494578 57494578 G A COQ9 3'UTR 0.17 TCGA-VQ-A8PT-01 16 57931733 57931733 G A CNGB1 Missense_Mutation p.T1021M 0.33 deleterious(0.04) probably_damaging(0.914) TCGA-VQ-A8PT-01 16 58031974 58031974 C T ZNF319 Missense_Mutation p.A66T 0.42 tolerated(0.58) benign(0.011) TCGA-VQ-A8PT-01 16 58318531 58318531 C T PRSS54 Missense_Mutation p.G206D 0.32 tolerated(0.06) probably_damaging(0.964) TCGA-VQ-A8PT-01 16 65038594 65038594 A - CDH11 Frame_Shift_Del p.F60Sfs*3 0.15 TCGA-VQ-A8PT-01 16 66955997 66955997 G A RRAD Silent p.H303H 0.36 TCGA-VQ-A8PT-01 16 67034875 67034875 G A CES4A Missense_Mutation p.G173D 0.36 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8PT-01 16 67235913 67235913 C - ELMO3 Frame_Shift_Del p.G417Vfs*44 0.24 TCGA-VQ-A8PT-01 16 67701908 67701908 A - C16orf86 Frame_Shift_Del p.A156Pfs*23 0.34 TCGA-VQ-A8PT-01 16 67914539 67914539 G A EDC4 Missense_Mutation p.R726H 0.41 deleterious(0) probably_damaging(0.98) TCGA-VQ-A8PT-01 16 70405967 70405967 G A DDX19A 3'UTR 0.47 TCGA-VQ-A8PT-01 16 70422377 70422377 A G ST3GAL2 Silent p.P202P 0.35 TCGA-VQ-A8PT-01 16 70690546 70690546 C T IL34 Silent p.Y68Y 0.29 TCGA-VQ-A8PT-01 16 71773232 71773232 G T AP1G1 Missense_Mutation p.A674D 0.55 tolerated(0.22) benign(0.004) TCGA-VQ-A8PT-01 16 72822657 72822657 G A ZFHX3 Missense_Mutation p.P3173L 0.39 unknown(0) TCGA-VQ-A8PT-01 16 72830903 72830904 CT - ZFHX3 Frame_Shift_Del p.R1893Gfs*35 0.39 TCGA-VQ-A8PT-01 16 75149194 75149194 G A LDHD Nonsense_Mutation p.Q77* 0.44 TCGA-VQ-A8PT-01 16 76587267 76587267 C T CNTNAP4 Missense_Mutation p.A1104V 0.50 tolerated(0.05) benign(0.011) TCGA-VQ-A8PT-01 16 77232252 77232252 T - MON1B 3'UTR 0.35 TCGA-VQ-A8PT-01 16 77369799 77369799 C G ADAMTS18 Missense_Mutation p.W571C 0.24 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8PT-01 16 77389906 77389906 G C ADAMTS18 Missense_Mutation p.T464R 0.37 deleterious(0) probably_damaging(1) TCGA-VQ-A8PT-01 16 7759122 7759122 G A RBFOX1 Missense_Mutation p.V375I 0.38 tolerated(0.46) benign(0.03) TCGA-VQ-A8PT-01 16 81399047 81399047 C T GAN Missense_Mutation p.T489I 0.46 tolerated(0.44) benign(0.058) TCGA-VQ-A8PT-01 16 825150 825150 C T MSLNL Missense_Mutation p.A493T 0.33 probably_damaging(0.913) TCGA-VQ-A8PT-01 16 832033 832033 G A MSLNL Silent p.G30G 0.44 TCGA-VQ-A8PT-01 16 84229451 84229451 G A ADAD2 Silent p.P443P 0.48 TCGA-VQ-A8PT-01 16 84690551 84690551 C T KLHL36 Silent p.C46C 0.40 TCGA-VQ-A8PT-01 16 85704616 85704616 G T GSE1 Missense_Mutation p.R1144L 0.46 deleterious(0) probably_damaging(0.988) TCGA-VQ-A8PT-01 16 87365059 87365059 G - FBXO31 Frame_Shift_Del p.V487Sfs*17 0.36 TCGA-VQ-A8PT-01 16 87741972 87741972 G A KLHDC4 Silent p.S516S 0.49 TCGA-VQ-A8PT-01 16 88967931 88967931 G - CBFA2T3 Frame_Shift_Del p.S96Pfs*24 0.25 TCGA-VQ-A8PT-01 16 89337296 89337296 G A ANKRD11 Missense_Mutation p.R2579C 0.29 probably_damaging(0.999) TCGA-VQ-A8PT-01 16 89346912 89346912 G A ANKRD11 Missense_Mutation p.A2013V 0.40 benign(0.058) TCGA-VQ-A8PT-01 16 89349123 89349123 G A ANKRD11 Missense_Mutation p.A1276V 0.14 benign(0) TCGA-VQ-A8PT-01 16 89603261 89603261 A G SPG7 Intron 0.28 TCGA-VQ-A8PT-01 16 89712381 89712381 C T CHMP1A 3'UTR 0.49 TCGA-VQ-A8PT-01 16 89735852 89735852 C T SPATA33 Missense_Mutation p.R123W 0.38 deleterious(0) probably_damaging(0.994) TCGA-VQ-A8PT-01 16 89960160 89960161 - A TCF25 Frame_Shift_Ins p.G244Rfs*8 0.25 TCGA-VQ-A8PT-01 16 9857405 9857405 G - GRIN2A Frame_Shift_Del p.S1333Qfs*64 0.23 TCGA-VQ-A8PT-01 17 10227387 10227387 C T MYH13 Silent p.E962E 0.28 TCGA-VQ-A8PT-01 17 10233752 10233752 C T MYH13 Missense_Mutation p.C796Y 0.33 deleterious(0.01) probably_damaging(0.993) TCGA-VQ-A8PT-01 17 11757429 11757429 G A DNAH9 Missense_Mutation p.R3206Q 0.38 possibly_damaging(0.532) TCGA-VQ-A8PT-01 17 14205002 14205002 C T HS3ST3B1 Missense_Mutation p.A56V 0.15 tolerated_low_confidence(0.29) benign(0.022) TCGA-VQ-A8PT-01 17 1581858 1581858 C T PRPF8 Missense_Mutation p.R603H 0.33 tolerated(0.06) probably_damaging(1) TCGA-VQ-A8PT-01 17 16004808 16004808 C T NCOR1 Missense_Mutation p.A816T 0.38 benign(0.001) TCGA-VQ-A8PT-01 17 1633694 1633694 C T WDR81 Missense_Mutation p.R1230C 0.34 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8PT-01 17 17696593 17696593 C T RAI1 Missense_Mutation p.R111C 0.29 deleterious(0) probably_damaging(0.939) TCGA-VQ-A8PT-01 17 17700181 17700181 C T RAI1 Missense_Mutation p.R1307W 0.34 deleterious(0.01) possibly_damaging(0.847) TCGA-VQ-A8PT-01 17 1841065 1841065 C A RTN4RL1 Silent p.A17A 0.22 TCGA-VQ-A8PT-01 17 19809539 19809539 G A AKAP10 3'UTR 0.25 TCGA-VQ-A8PT-01 17 20108263 20108263 A - SPECC1 Frame_Shift_Del p.N303Tfs*63 0.37 TCGA-VQ-A8PT-01 17 21319340 21319340 G A KCNJ12 Missense_Mutation p.R229H 0.09 deleterious(0) probably_damaging(0.978) TCGA-VQ-A8PT-01 17 21731489 21731489 C - UBBP4 Frame_Shift_Del p.D191Ifs*35 0.26 TCGA-VQ-A8PT-01 17 25639408 25639408 T A WSB1 3'UTR 0.41 TCGA-VQ-A8PT-01 17 2601621 2601621 C A CLUH Silent p.T472T 0.43 TCGA-VQ-A8PT-01 17 2604705 2604705 C A CLUH Missense_Mutation p.R247L 0.38 deleterious(0) possibly_damaging(0.458) TCGA-VQ-A8PT-01 17 2606640 2606640 C A CLUH Missense_Mutation p.Q111H 0.31 deleterious(0.01) benign(0.396) TCGA-VQ-A8PT-01 17 26655634 26655634 T - IFT20 3'UTR 0.80 TCGA-VQ-A8PT-01 17 26658933 26658933 T C IFT20 Missense_Mutation p.T53A 0.39 tolerated(1) benign(0.001) TCGA-VQ-A8PT-01 17 26694869 26694869 G A CTB-96E2.2 Silent p.S55S 0.44 TCGA-VQ-A8PT-01 17 26816266 26816266 C T SLC13A2 Missense_Mutation p.A46V 0.26 deleterious(0.02) probably_damaging(0.986) TCGA-VQ-A8PT-01 17 27085211 27085211 A G FAM222B 3'UTR 0.45 TCGA-VQ-A8PT-01 17 27401137 27401137 C A TIAF1 Missense_Mutation p.Q27H 0.51 deleterious_low_confidence(0.01) benign(0.387) TCGA-VQ-A8PT-01 17 28616408 28616408 G A BLMH Silent p.L102L 0.31 TCGA-VQ-A8PT-01 17 29632035 29632035 T - EVI2B Frame_Shift_Del p.N198Tfs*6 0.26 TCGA-VQ-A8PT-01 17 29849055 29849055 T C RAB11FIP4 Missense_Mutation p.L294P 0.35 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PT-01 17 30202308 30202309 TT - UTP6 Frame_Shift_Del p.K417Efs*3 0.19 TCGA-VQ-A8PT-01 17 30349234 30349234 A - LRRC37B Frame_Shift_Del p.N358Mfs*27 0.33 TCGA-VQ-A8PT-01 17 30349624 30349624 G A LRRC37B Missense_Mutation p.E487K 0.39 tolerated(0.08) benign(0.095) TCGA-VQ-A8PT-01 17 31348259 31348259 C T ASIC2 Silent p.A473A 0.49 TCGA-VQ-A8PT-01 17 32953979 32953979 C T TMEM132E Missense_Mutation p.R211W 0.27 deleterious(0.02) possibly_damaging(0.851) TCGA-VQ-A8PT-01 17 3627248 3627248 G T GSG2 Nonsense_Mutation p.G7* 0.39 TCGA-VQ-A8PT-01 17 37235397 37235397 C T PLXDC1 Missense_Mutation p.R337H 0.34 deleterious(0) probably_damaging(0.985) TCGA-VQ-A8PT-01 17 37686901 37686901 C - CDK12 Frame_Shift_Del p.G1271Dfs*23 0.26 TCGA-VQ-A8PT-01 17 38249345 38249345 G A THRA Missense_Mutation p.V395I 0.70 tolerated_low_confidence(0.43) benign(0) TCGA-VQ-A8PT-01 17 38252768 38252768 C T NR1D1 Missense_Mutation p.V178I 0.35 tolerated(0.12) benign(0.003) TCGA-VQ-A8PT-01 17 3844337 3844337 G A ATP2A3 Silent p.F676F 0.42 TCGA-VQ-A8PT-01 17 38498778 38498778 G A RARA Intron 0.42 TCGA-VQ-A8PT-01 17 38546381 38546381 T - TOP2A Frame_Shift_Del p.R1435Gfs*13 0.33 TCGA-VQ-A8PT-01 17 38712036 38712036 T C CCR7 Missense_Mutation p.Y32C 0.37 deleterious(0) probably_damaging(0.971) TCGA-VQ-A8PT-01 17 38784981 38784982 - A SMARCE1 3'UTR 0.29 TCGA-VQ-A8PT-01 17 38922734 38922734 T C KRT26 3'UTR 0.39 TCGA-VQ-A8PT-01 17 39114763 39114763 G A KRT39 3'UTR 0.40 TCGA-VQ-A8PT-01 17 39197170 39197170 T C KRTAP1-1 Silent p.G160G 0.46 TCGA-VQ-A8PT-01 17 3954314 3954314 G A ZZEF1 Missense_Mutation p.T1875M 0.30 deleterious(0) possibly_damaging(0.889) TCGA-VQ-A8PT-01 17 39671930 39671930 C A KRT15 Missense_Mutation p.E347D 0.41 deleterious(0.01) probably_damaging(0.998) TCGA-VQ-A8PT-01 17 39767721 39767721 A G KRT16 Missense_Mutation p.V216A 0.38 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8PT-01 17 39883702 39883702 C T HAP1 Intron 0.37 TCGA-VQ-A8PT-01 17 40262861 40262861 G A DHX58 Silent p.S147S 0.40 TCGA-VQ-A8PT-01 17 40766591 40766591 G T TUBG1 Silent p.V358V 0.40 TCGA-VQ-A8PT-01 17 40961510 40961510 T C CNTD1 Missense_Mutation p.L317P 0.30 tolerated_low_confidence(0.2) benign(0.002) TCGA-VQ-A8PT-01 17 41143116 41143116 G A RUNDC1 Missense_Mutation p.A409T 0.30 tolerated(0.65) benign(0.002) TCGA-VQ-A8PT-01 17 42030835 42030835 C A PYY Missense_Mutation p.R6M 0.18 deleterious(0.04) possibly_damaging(0.903) TCGA-VQ-A8PT-01 17 42428140 42428140 G A GRN Missense_Mutation p.G227E 0.37 deleterious(0.01) probably_damaging(0.971) TCGA-VQ-A8PT-01 17 42483347 42483348 - T GPATCH8 Frame_Shift_Ins p.Q189Tfs*10 0.33 TCGA-VQ-A8PT-01 17 43351837 43351837 G A MAP3K14 RNA 0.35 TCGA-VQ-A8PT-01 17 43924062 43924062 G A SPPL2C Missense_Mutation p.R597H 0.25 tolerated_low_confidence(1) benign(0) TCGA-VQ-A8PT-01 17 4442662 4442662 C T MYBBP1A Intron 0.38 TCGA-VQ-A8PT-01 17 44626382 44626382 A G LRRC37A2 Missense_Mutation p.K1293E 0.14 tolerated(0.54) benign(0.003) TCGA-VQ-A8PT-01 17 45376747 45376747 G A ITGB3 Silent p.T588T 0.42 TCGA-VQ-A8PT-01 17 45682896 45682896 C T NPEPPS Silent p.G691G 0.50 TCGA-VQ-A8PT-01 17 4620985 4620985 C T ARRB2 Silent p.C162C 0.25 TCGA-VQ-A8PT-01 17 47236478 47236478 A C B4GALNT2 Missense_Mutation p.K253T 0.27 tolerated(0.15) possibly_damaging(0.889) TCGA-VQ-A8PT-01 17 47794908 47794908 C T FAM117A Missense_Mutation p.A293T 0.32 tolerated(0.6) benign(0.003) TCGA-VQ-A8PT-01 17 48263190 48263190 G A COL1A1 Silent p.R1399R 0.37 TCGA-VQ-A8PT-01 17 48745328 48745329 - C ABCC3 Frame_Shift_Ins p.L582Pfs*31 0.32 TCGA-VQ-A8PT-01 17 51900590 51900590 A - KIF2B Frame_Shift_Del p.G68Afs*12 0.22 TCGA-VQ-A8PT-01 17 53014068 53014068 A G TOM1L1 Missense_Mutation p.N305D 0.18 tolerated(0.27) benign(0) TCGA-VQ-A8PT-01 17 55193509 55193509 C A AKAP1 Silent p.A773A 0.32 TCGA-VQ-A8PT-01 17 56429513 56429515 AAC - SUPT4H1 5'UTR 0.31 TCGA-VQ-A8PT-01 17 56435161 56435161 C - RNF43 Frame_Shift_Del p.G659Vfs*41 0.27 TCGA-VQ-A8PT-01 17 56676590 56676590 G A TEX14 Missense_Mutation p.P712S 0.37 tolerated(0.38) benign(0.01) TCGA-VQ-A8PT-01 17 56690898 56690898 G A TEX14 Missense_Mutation p.R303W 0.25 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PT-01 17 56809872 56809872 C T RAD51C Silent p.S331S 0.44 TCGA-VQ-A8PT-01 17 58740624 58740624 A - PPM1D Frame_Shift_Del p.N512Ifs*2 0.27 TCGA-VQ-A8PT-01 17 59949813 59949813 G - INTS2 Frame_Shift_Del p.P872Hfs*2 0.32 TCGA-VQ-A8PT-01 17 61611429 61611429 C T KCNH6 Silent p.D286D 0.42 TCGA-VQ-A8PT-01 17 61620958 61620958 T C KCNH6 Missense_Mutation p.S724P 0.42 tolerated(0.18) benign(0.002) TCGA-VQ-A8PT-01 17 66416461 66416461 C T ARSG Silent p.L479L 0.38 TCGA-VQ-A8PT-01 17 67132169 67132169 C T ABCA6 Intron 0.50 TCGA-VQ-A8PT-01 17 67302933 67302933 C T ABCA5 Missense_Mutation p.V241I 0.29 tolerated(0.12) benign(0.176) TCGA-VQ-A8PT-01 17 6946966 6946966 G A SLC16A11 5'UTR 0.36 TCGA-VQ-A8PT-01 17 7096856 7096856 C T DLG4 Missense_Mutation p.A590T 0.24 deleterious(0) benign(0.443) TCGA-VQ-A8PT-01 17 72322383 72322383 C T KIF19 5'UTR 0.40 TCGA-VQ-A8PT-01 17 72539055 72539055 G A CD300C Missense_Mutation p.H158Y 0.38 tolerated(1) benign(0.029) TCGA-VQ-A8PT-01 17 73491063 73491063 C - KIAA0195 Frame_Shift_Del p.S895Pfs*13 0.25 TCGA-VQ-A8PT-01 17 74073109 74073109 C T GALR2 Missense_Mutation p.A254V 0.51 tolerated(1) benign(0.096) TCGA-VQ-A8PT-01 17 74136189 74136189 C T FOXJ1 Silent p.T96T 0.36 TCGA-VQ-A8PT-01 17 7529640 7529640 G T SAT2 3'UTR 0.45 TCGA-VQ-A8PT-01 17 76045345 76045345 A G TNRC6C Missense_Mutation p.S68G 0.40 tolerated(0.58) benign(0) TCGA-VQ-A8PT-01 17 7608922 7608922 G C EFNB3 Silent p.G2G 0.38 TCGA-VQ-A8PT-01 17 76167685 76167686 TG - SYNGR2 Frame_Shift_Del p.V145Efs*38 0.20 TCGA-VQ-A8PT-01 17 76851806 76851806 C T TIMP2 Silent p.A202A 0.39 TCGA-VQ-A8PT-01 17 7752945 7752945 T C KDM6B Silent p.G1113G 0.21 TCGA-VQ-A8PT-01 17 79503723 79503723 G A FSCN2 Missense_Mutation p.C418Y 0.47 deleterious(0.03) possibly_damaging(0.898) TCGA-VQ-A8PT-01 17 79915765 79915765 G A NOTUM Silent p.G204G 0.36 TCGA-VQ-A8PT-01 17 79918582 79918582 C T NOTUM Silent p.A68A 0.30 TCGA-VQ-A8PT-01 17 80194007 80194007 C A SLC16A3 Silent p.A41A 0.39 TCGA-VQ-A8PT-01 17 80332626 80332626 C T UTS2R Silent p.T142T 0.36 TCGA-VQ-A8PT-01 17 8224298 8224298 C - ARHGEF15 Frame_Shift_Del p.P840Hfs*6 0.26 TCGA-VQ-A8PT-01 17 8409702 8409702 G A MYH10 Missense_Mutation p.A1107V 0.34 benign(0.115) TCGA-VQ-A8PT-01 18 10696230 10696230 C T PIEZO2 Silent p.G2231G 0.31 TCGA-VQ-A8PT-01 18 21111681 21111681 T - NPC1 3'UTR 0.26 TCGA-VQ-A8PT-01 18 33263543 33263543 G A GALNT1 Missense_Mutation p.A224T 0.33 tolerated(0.31) benign(0.045) TCGA-VQ-A8PT-01 18 34205516 34205516 C - FHOD3 Frame_Shift_Del p.S336Vfs*138 0.31 TCGA-VQ-A8PT-01 18 34855091 34855091 G A CELF4 Silent p.D188D 0.44 TCGA-VQ-A8PT-01 18 3596825 3596828 TGAT - DLGAP1 Intron 0.32 TCGA-VQ-A8PT-01 18 42530560 42530560 A - SETBP1 Frame_Shift_Del p.R421Dfs*23 0.23 TCGA-VQ-A8PT-01 18 42532026 42532026 C T SETBP1 Silent p.S907S 0.54 TCGA-VQ-A8PT-01 18 42643220 42643220 G A SETBP1 Missense_Mutation p.V1450M 0.43 deleterious(0) probably_damaging(0.994) TCGA-VQ-A8PT-01 18 43440287 43440287 A G EPG5 Missense_Mutation p.M2264T 0.50 tolerated(0.22) possibly_damaging(0.774) TCGA-VQ-A8PT-01 18 44559585 44559585 G A TCEB3B Missense_Mutation p.T684I 0.37 deleterious(0.04) benign(0.016) TCGA-VQ-A8PT-01 18 44660888 44660888 G A HDHD2 Missense_Mutation p.R97W 0.27 deleterious(0.02) probably_damaging(0.914) TCGA-VQ-A8PT-01 18 45395686 45395686 C T SMAD2 Missense_Mutation p.E150K 0.21 tolerated(0.13) possibly_damaging(0.57) TCGA-VQ-A8PT-01 18 56586774 56586774 C - ZNF532 Frame_Shift_Del p.R421Gfs*9 0.28 TCGA-VQ-A8PT-01 18 60985719 60985719 C T BCL2 Missense_Mutation p.A61T 0.48 tolerated(0.54) benign(0.004) TCGA-VQ-A8PT-01 18 67872915 67872915 C T RTTN 5'UTR 0.37 TCGA-VQ-A8PT-01 18 77794615 77794615 C T RBFA Silent p.S40S 0.38 TCGA-VQ-A8PT-01 18 77918244 77918244 G A PARD6G Missense_Mutation p.R181C 0.50 deleterious(0.01) benign(0.417) TCGA-VQ-A8PT-01 18 77960796 77960796 C A PARD6G Missense_Mutation p.R31M 0.41 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PT-01 18 7888165 7888165 A G PTPRM Silent p.L86L 0.34 TCGA-VQ-A8PT-01 19 10221505 10221505 G A PPAN Silent p.E388E 0.27 TCGA-VQ-A8PT-01 19 10291155 10291155 G A DNMT1 Missense_Mutation p.R106C 0.43 tolerated_low_confidence(0.66) benign(0.001) TCGA-VQ-A8PT-01 19 10334648 10334648 C - S1PR2 Frame_Shift_Del p.V312Cfs*? 0.37 TCGA-VQ-A8PT-01 19 10404725 10404725 G T ICAM5 Missense_Mutation p.R574M 0.31 tolerated(0.05) benign(0.312) TCGA-VQ-A8PT-01 19 1063666 1063666 G A ABCA7 Missense_Mutation p.V1946M 0.27 deleterious(0.03) benign(0.249) TCGA-VQ-A8PT-01 19 11618821 11618821 G - ECSIT Frame_Shift_Del p.Q261Sfs*5 0.31 TCGA-VQ-A8PT-01 19 12223669 12223669 G A ZNF788 Missense_Mutation p.R436H 0.41 tolerated(1) benign(0) TCGA-VQ-A8PT-01 19 12763006 12763006 C T MAN2B1 Silent p.P669P 0.28 TCGA-VQ-A8PT-01 19 12863463 12863465 GCT - BEST2 In_Frame_Del p.L23del 0.35 TCGA-VQ-A8PT-01 19 13395983 13395983 T - CACNA1A Frame_Shift_Del p.E1198Rfs*43 0.22 TCGA-VQ-A8PT-01 19 14273726 14273726 C T LPHN1 Missense_Mutation p.R301H 0.35 deleterious(0) probably_damaging(1) TCGA-VQ-A8PT-01 19 15572067 15572067 C T RASAL3 Missense_Mutation p.G169D 0.42 tolerated(0.48) benign(0.282) TCGA-VQ-A8PT-01 19 16268651 16268651 A G HSH2D 3'Flank 0.44 TCGA-VQ-A8PT-01 19 17316100 17316100 C T MYO9B Silent p.C1673C 0.38 TCGA-VQ-A8PT-01 19 17487743 17487743 A G PLVAP Missense_Mutation p.C119R 0.46 deleterious(0) probably_damaging(0.986) TCGA-VQ-A8PT-01 19 18778652 18778652 G A KLHL26 Missense_Mutation p.V149M 0.36 tolerated(0.09) probably_damaging(0.989) TCGA-VQ-A8PT-01 19 1913067 1913067 G A ADAT3 Missense_Mutation p.A341T 0.36 tolerated(0.58) benign(0.003) TCGA-VQ-A8PT-01 19 19387391 19387391 G A SUGP1 3'UTR 0.32 TCGA-VQ-A8PT-01 19 19627086 19627086 G - NDUFA13 Frame_Shift_Del p.G15Afs*24 0.32 TCGA-VQ-A8PT-01 19 19735115 19735115 G A LPAR2 Missense_Mutation p.R336C 0.38 deleterious(0.01) benign(0.298) TCGA-VQ-A8PT-01 19 20002392 20002392 A - ZNF253 Frame_Shift_Del p.G115Afs*22 0.14 TCGA-VQ-A8PT-01 19 20727476 20727476 A T ZNF737 Nonsense_Mutation p.C511* 0.28 TCGA-VQ-A8PT-01 19 2078642 2078642 C T MOB3A 5'UTR 0.26 TCGA-VQ-A8PT-01 19 20808338 20808338 T - ZNF626 Frame_Shift_Del p.G116Dfs*3 0.33 TCGA-VQ-A8PT-01 19 20829164 20829164 C A ZNF626 Missense_Mutation p.E17D 0.37 deleterious(0) probably_damaging(0.992) TCGA-VQ-A8PT-01 19 21607044 21607044 G A ZNF493 Missense_Mutation p.R528Q 0.33 tolerated(0.64) benign(0.008) TCGA-VQ-A8PT-01 19 2338759 2338759 G - SPPL2B RNA 0.28 TCGA-VQ-A8PT-01 19 23406250 23406250 G A ZNF724P Missense_Mutation p.S266F 0.30 tolerated(0.31) possibly_damaging(0.901) TCGA-VQ-A8PT-01 19 2805099 2805099 C - THOP1 Frame_Shift_Del p.L227Sfs*2 0.35 TCGA-VQ-A8PT-01 19 2877916 2877916 C T ZNF556 Silent p.C320C 0.34 TCGA-VQ-A8PT-01 19 30164902 30164902 G A PLEKHF1 Silent p.P52P 0.43 TCGA-VQ-A8PT-01 19 30934676 30934676 C T ZNF536 Silent p.H69H 0.23 TCGA-VQ-A8PT-01 19 30935540 30935540 G A ZNF536 Silent p.A357A 0.24 TCGA-VQ-A8PT-01 19 33370222 33370222 C T CEP89 Missense_Mutation p.R733Q 0.36 deleterious(0.02) probably_damaging(0.928) TCGA-VQ-A8PT-01 19 34895871 34895872 AG - RP11-618P17.4 Frame_Shift_Del p.E136Gfs*14 0.36 TCGA-VQ-A8PT-01 19 35719150 35719150 C T FAM187B Nonsense_Mutation p.W145* 0.35 TCGA-VQ-A8PT-01 19 36019046 36019047 CT - SBSN Frame_Shift_Del p.E46Gfs*27 0.33 TCGA-VQ-A8PT-01 19 36053504 36053504 G A ATP4A Missense_Mutation p.R85W 0.36 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PT-01 19 36214728 36214728 G - KMT2B Frame_Shift_Del p.R1055Gfs*127 0.50 TCGA-VQ-A8PT-01 19 36517854 36517854 C T CLIP3 Missense_Mutation p.G134R 0.43 deleterious(0) probably_damaging(1) TCGA-VQ-A8PT-01 19 36556907 36556907 T C WDR62 Missense_Mutation p.V127A 0.34 deleterious(0) benign(0.273) TCGA-VQ-A8PT-01 19 36728175 36728175 G A ZNF146 Missense_Mutation p.S278N 0.38 tolerated(0.15) probably_damaging(0.993) TCGA-VQ-A8PT-01 19 37427771 37427771 G A ZNF568 Missense_Mutation p.V87M 0.47 tolerated(0.07) probably_damaging(0.999) TCGA-VQ-A8PT-01 19 3752683 3752683 G A APBA3 Silent p.G406G 0.41 TCGA-VQ-A8PT-01 19 38976414 38976414 C T RYR1 Missense_Mutation p.R1707C 0.32 probably_damaging(0.996) TCGA-VQ-A8PT-01 19 38976571 38976571 G A RYR1 Missense_Mutation p.R1759Q 0.32 benign(0.33) TCGA-VQ-A8PT-01 19 39905844 39905844 C T PLEKHG2 Missense_Mutation p.R108W 0.36 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-VQ-A8PT-01 19 39915897 39915897 G T PLEKHG2 Missense_Mutation p.R1375M 0.28 deleterious_low_confidence(0) possibly_damaging(0.819) TCGA-VQ-A8PT-01 19 39971145 39971145 T - TIMM50 5'UTR 0.35 TCGA-VQ-A8PT-01 19 39989597 39989597 C - DLL3 5'Flank 0.29 TCGA-VQ-A8PT-01 19 40363172 40363172 G A FCGBP Silent p.G4966G 0.41 TCGA-VQ-A8PT-01 19 40368670 40368670 A G FCGBP Silent p.N4226N 0.17 TCGA-VQ-A8PT-01 19 40434001 40434001 C T FCGBP Missense_Mutation p.V90I 0.36 benign(0.444) TCGA-VQ-A8PT-01 19 40904562 40904562 C T PRX Missense_Mutation p.E116K 0.35 deleterious(0.01) possibly_damaging(0.502) TCGA-VQ-A8PT-01 19 41173789 41173789 C T NUMBL Missense_Mutation p.A472T 0.50 tolerated_low_confidence(0.49) benign(0.001) TCGA-VQ-A8PT-01 19 41351931 41351931 C T CYP2A6 Silent p.G301G 0.08 TCGA-VQ-A8PT-01 19 41351932 41351932 C G CYP2A6 Missense_Mutation p.G301A 0.10 benign(0.001) TCGA-VQ-A8PT-01 19 41383856 41383856 T C CYP2A7 Missense_Mutation p.M292V 0.33 tolerated(1) benign(0) TCGA-VQ-A8PT-01 19 42744367 42744367 A G GSK3A Intron 0.30 TCGA-VQ-A8PT-01 19 42838298 42838298 G - MEGF8 Frame_Shift_Del p.G166Vfs*53 0.27 TCGA-VQ-A8PT-01 19 43688982 43688982 C T PSG5 Missense_Mutation p.G128S 0.35 tolerated(0.24) benign(0.103) TCGA-VQ-A8PT-01 19 44039366 44039366 C T ZNF575 Nonsense_Mutation p.R89* 0.43 TCGA-VQ-A8PT-01 19 44280736 44280736 A G KCNN4 Missense_Mutation p.L71S 0.40 deleterious(0) benign(0.011) TCGA-VQ-A8PT-01 19 44418514 44418514 T G ZNF45 Missense_Mutation p.K358N 0.36 deleterious(0) probably_damaging(0.944) TCGA-VQ-A8PT-01 19 44602039 44602039 A G ZNF224 Missense_Mutation p.K5E 0.34 deleterious(0.04) benign(0.003) TCGA-VQ-A8PT-01 19 44739751 44739751 G A ZNF227 Missense_Mutation p.G390S 0.40 tolerated(1) possibly_damaging(0.906) TCGA-VQ-A8PT-01 19 44777927 44777927 T C ZNF233 Missense_Mutation p.C372R 0.36 deleterious(0.03) possibly_damaging(0.523) TCGA-VQ-A8PT-01 19 4496358 4496358 C T HDGFRP2 Silent p.G428G 0.25 TCGA-VQ-A8PT-01 19 4529279 4529279 C - PLIN5 Intron 0.28 TCGA-VQ-A8PT-01 19 45561055 45561055 C T CLASRP Missense_Mutation p.T171M 0.43 deleterious(0) probably_damaging(0.971) TCGA-VQ-A8PT-01 19 45574081 45574081 G A CLASRP Missense_Mutation p.R668Q 0.31 deleterious_low_confidence(0) unknown(0) TCGA-VQ-A8PT-01 19 45655130 45655130 C - NKPD1 3'UTR 0.29 TCGA-VQ-A8PT-01 19 45901285 45901285 G A PPP1R13L Missense_Mutation p.P59L 0.29 tolerated_low_confidence(0.06) benign(0.003) TCGA-VQ-A8PT-01 19 46307761 46307761 C T RSPH6A Missense_Mutation p.V468I 0.32 tolerated(0.63) benign(0.031) TCGA-VQ-A8PT-01 19 4704258 4704258 C T DPP9 Missense_Mutation p.R162H 0.42 deleterious(0) probably_damaging(0.97) TCGA-VQ-A8PT-01 19 47844446 47844446 C T C5AR2 Silent p.A130A 0.29 TCGA-VQ-A8PT-01 19 4816465 4816465 G - TICAM1 Frame_Shift_Del p.P642Hfs*50 0.41 TCGA-VQ-A8PT-01 19 48229194 48229194 C T EHD2 Missense_Mutation p.H210Y 0.29 tolerated(0.32) benign(0.02) TCGA-VQ-A8PT-01 19 48631220 48631220 G A LIG1 Missense_Mutation p.R627W 0.41 tolerated(0.05) benign(0.031) TCGA-VQ-A8PT-01 19 49136701 49136703 CTT - DBP In_Frame_Del p.K254del 0.41 TCGA-VQ-A8PT-01 19 49575576 49575576 G A KCNA7 Silent p.F89F 0.50 TCGA-VQ-A8PT-01 19 49641557 49641557 G A PPFIA3 Missense_Mutation p.R650H 0.41 tolerated(0.19) possibly_damaging(0.655) TCGA-VQ-A8PT-01 19 49850473 49850473 G - TEAD2 Frame_Shift_Del p.H299Mfs*12 0.31 TCGA-VQ-A8PT-01 19 50394244 50394244 G T IL4I1 Missense_Mutation p.L275I 0.62 tolerated(0.61) possibly_damaging(0.874) TCGA-VQ-A8PT-01 19 50397564 50397564 G A IL4I1 Silent p.G198G 0.55 TCGA-VQ-A8PT-01 19 50412225 50412230 GGTGGC - NUP62 In_Frame_Del p.A279_T280del 0.39 TCGA-VQ-A8PT-01 19 50436183 50436183 G A ATF5 Missense_Mutation p.R228Q 0.37 deleterious(0.01) probably_damaging(0.994) TCGA-VQ-A8PT-01 19 51220080 51220080 G T SHANK1 Missense_Mutation p.P33T 0.38 possibly_damaging(0.908) TCGA-VQ-A8PT-01 19 51738453 51738453 G A CD33 Missense_Mutation p.G263R 0.14 tolerated(0.07) possibly_damaging(0.716) TCGA-VQ-A8PT-01 19 51890512 51890512 G - LIM2 Frame_Shift_Del p.G63Afs*48 0.34 TCGA-VQ-A8PT-01 19 52659012 52659012 C A ZNF836 Nonsense_Mutation p.E642* 0.38 TCGA-VQ-A8PT-01 19 53344725 53344725 A G ZNF468 Silent p.N274N 0.32 TCGA-VQ-A8PT-01 19 53625804 53625804 C T ZNF415 5'UTR 0.37 TCGA-VQ-A8PT-01 19 54081002 54081002 G A ZNF331 Silent p.S396S 0.38 TCGA-VQ-A8PT-01 19 54312863 54312875 CTCCTGCGGAGCA - NLRP12 Frame_Shift_Del p.C680Rfs*32 0.19 TCGA-VQ-A8PT-01 19 54515282 54515282 C - CACNG6 Frame_Shift_Del p.P209Rfs*21 0.35 TCGA-VQ-A8PT-01 19 55220536 55220536 C A AC098784.2 3'Flank 0.45 TCGA-VQ-A8PT-01 19 55568072 55568072 C T RDH13 Missense_Mutation p.D97N 0.30 deleterious(0.03) probably_damaging(0.948) TCGA-VQ-A8PT-01 19 55889560 55889562 GAG - TMEM190 In_Frame_Del p.E176del 0.30 TCGA-VQ-A8PT-01 19 56090215 56090215 G - ZNF579 Frame_Shift_Del p.P264Rfs*141 0.44 TCGA-VQ-A8PT-01 19 56104615 56104615 G T FIZ1 Missense_Mutation p.P231Q 0.27 tolerated(0.4) unknown(0) TCGA-VQ-A8PT-01 19 57133026 57133026 G A ZNF71 Missense_Mutation p.C124Y 0.24 deleterious(0.04) benign(0.011) TCGA-VQ-A8PT-01 19 57954757 57954757 C A ZNF749 Missense_Mutation p.L81M 0.36 deleterious(0.02) possibly_damaging(0.86) TCGA-VQ-A8PT-01 19 58049607 58049607 C T ZNF549 Missense_Mutation p.T412M 0.40 deleterious(0) probably_damaging(0.988) TCGA-VQ-A8PT-01 19 58049657 58049657 A - ZNF549 Frame_Shift_Del p.R431Dfs*206 0.23 TCGA-VQ-A8PT-01 19 58084801 58084801 T G ZNF416 Silent p.S157S 0.30 TCGA-VQ-A8PT-01 19 58290950 58290952 TTA - ZNF586 In_Frame_Del p.I334del 0.45 TCGA-VQ-A8PT-01 19 58361414 58361414 C T ZNF587 Missense_Mutation p.A3V 0.29 tolerated(0.05) possibly_damaging(0.75) TCGA-VQ-A8PT-01 19 58384645 58384645 C T ZNF814 Missense_Mutation p.V705I 0.25 tolerated(0.32) benign(0.013) TCGA-VQ-A8PT-01 19 58437453 58437453 C A ZNF418 3'UTR 0.44 TCGA-VQ-A8PT-01 19 58571427 58571427 C T ZNF135 Intron 0.34 TCGA-VQ-A8PT-01 19 58967503 58967503 G A ZNF324B Missense_Mutation p.V398I 0.34 tolerated(0.1) benign(0.227) TCGA-VQ-A8PT-01 19 59065442 59065442 G A CHMP2A Silent p.D46D 0.38 TCGA-VQ-A8PT-01 19 5914685 5914685 G A CAPS Silent p.V65V 0.39 TCGA-VQ-A8PT-01 19 605138 605138 C T HCN2 Silent p.C378C 0.41 TCGA-VQ-A8PT-01 19 6590953 6590953 C T CD70 Missense_Mutation p.A21T 0.28 tolerated(0.4) possibly_damaging(0.811) TCGA-VQ-A8PT-01 19 7527091 7527091 C T ARHGEF18 Nonsense_Mutation p.Q648* 0.46 TCGA-VQ-A8PT-01 19 7592435 7592435 C - MCOLN1 Frame_Shift_Del p.P202Lfs*36 0.29 TCGA-VQ-A8PT-01 19 7676819 7676819 C T CAMSAP3 Silent p.D507D 0.44 TCGA-VQ-A8PT-01 19 7742551 7742551 C T C19orf59 Silent p.I41I 0.34 TCGA-VQ-A8PT-01 19 7806377 7806378 - A CD209 3'UTR 0.31 TCGA-VQ-A8PT-01 19 7963864 7963864 C A LRRC8E Missense_Mutation p.L153M 0.29 deleterious(0.02) probably_damaging(0.986) TCGA-VQ-A8PT-01 19 8564336 8564336 G A PRAM1 Missense_Mutation p.P119L 0.32 deleterious(0.03) possibly_damaging(0.852) TCGA-VQ-A8PT-01 19 886180 886180 C T MED16 Missense_Mutation p.E157K 0.42 deleterious(0) possibly_damaging(0.621) TCGA-VQ-A8PT-01 19 9049889 9049889 G A MUC16 Missense_Mutation p.P10581L 0.38 benign(0) TCGA-VQ-A8PT-01 19 9060171 9060171 C - MUC16 Frame_Shift_Del p.G9092Vfs*28 0.28 TCGA-VQ-A8PT-01 1 110765681 110765682 AG - KCNC4 Frame_Shift_Del p.E259Dfs*121 0.29 TCGA-VQ-A8PT-01 1 110883539 110883539 T C RBM15 Silent p.H504H 0.37 TCGA-VQ-A8PT-01 1 111860698 111860698 G A CHIA Silent p.P232P 0.30 TCGA-VQ-A8PT-01 1 112033294 112033294 G A ADORA3 Silent p.S147S 0.41 TCGA-VQ-A8PT-01 1 11269508 11269508 G A MTOR Missense_Mutation p.T1221I 0.38 tolerated(0.25) benign(0.243) TCGA-VQ-A8PT-01 1 113058996 113058996 C T WNT2B Missense_Mutation p.A213V 0.43 deleterious(0.01) probably_damaging(0.976) TCGA-VQ-A8PT-01 1 113616220 113616220 G A LRIG2 Silent p.P64P 0.33 TCGA-VQ-A8PT-01 1 115523966 115523966 A C SYCP1 Missense_Mutation p.T798P 0.39 tolerated(0.06) possibly_damaging(0.886) TCGA-VQ-A8PT-01 1 11580814 11580814 G A PTCHD2 Silent p.P757P 0.43 TCGA-VQ-A8PT-01 1 116519236 116519236 C T SLC22A15 5'UTR 0.35 TCGA-VQ-A8PT-01 1 116941372 116941372 G A ATP1A1 Missense_Mutation p.D752N 0.34 tolerated(0.08) probably_damaging(0.964) TCGA-VQ-A8PT-01 1 118583388 118583388 C A SPAG17 Missense_Mutation p.G1044V 0.29 deleterious(0) probably_damaging(1) TCGA-VQ-A8PT-01 1 119466101 119466101 A G TBX15 Silent p.P167P 0.35 TCGA-VQ-A8PT-01 1 12018669 12018669 C T PLOD1 Missense_Mutation p.P314S 0.24 deleterious(0.01) possibly_damaging(0.801) TCGA-VQ-A8PT-01 1 120906088 120906088 A - RP11-439A17.4 5'Flank 0.35 TCGA-VQ-A8PT-01 1 120930161 120930161 A - FCGR1B Frame_Shift_Del p.F147Sfs*10 0.15 TCGA-VQ-A8PT-01 1 12266796 12266796 G T TNFRSF1B Splice_Site p.X369_splice 0.37 TCGA-VQ-A8PT-01 1 12337200 12337200 T C VPS13D Silent p.N1185N 0.35 TCGA-VQ-A8PT-01 1 144871778 144871778 G A PDE4DIP Silent p.L1728L 0.15 TCGA-VQ-A8PT-01 1 145415612 145415612 C T HFE2 Missense_Mutation p.A144V 0.39 tolerated(0.12) benign(0.051) TCGA-VQ-A8PT-01 1 145417083 145417083 G T HFE2 3'UTR 0.46 TCGA-VQ-A8PT-01 1 145563007 145563007 C T ANKRD35 Missense_Mutation p.R899W 0.40 deleterious(0) probably_damaging(0.989) TCGA-VQ-A8PT-01 1 150305199 150305200 - A PRPF3 Frame_Shift_Ins p.Q159Tfs*6 0.30 TCGA-VQ-A8PT-01 1 150530505 150530506 - G ADAMTSL4 Frame_Shift_Ins p.G758Wfs*59 0.36 TCGA-VQ-A8PT-01 1 150531083 150531083 G C ADAMTSL4 Silent p.G839G 0.31 TCGA-VQ-A8PT-01 1 151798504 151798504 C T RORC Intron 0.51 TCGA-VQ-A8PT-01 1 152129060 152129060 T C RPTN Missense_Mutation p.Q172R 0.27 deleterious(0.02) possibly_damaging(0.844) TCGA-VQ-A8PT-01 1 152191467 152191467 G A HRNR Missense_Mutation p.R880C 0.40 unknown(0) TCGA-VQ-A8PT-01 1 153029177 153029177 C T SPRR2A Missense_Mutation p.C12Y 0.21 deleterious_low_confidence(0) unknown(0) TCGA-VQ-A8PT-01 1 153957258 153957258 C A RAB13 Splice_Site p.X42_splice 0.37 TCGA-VQ-A8PT-01 1 154932028 154932028 G - PYGO2 Frame_Shift_Del p.Q150Rfs*11 0.29 TCGA-VQ-A8PT-01 1 154965550 154965550 A G FLAD1 3'UTR 0.31 TCGA-VQ-A8PT-01 1 155166853 155166853 C T THBS3 Missense_Mutation p.R884Q 0.23 deleterious(0) probably_damaging(1) TCGA-VQ-A8PT-01 1 155205017 155205017 C T GBA Missense_Mutation p.D492N 0.46 deleterious(0.01) benign(0.052) TCGA-VQ-A8PT-01 1 155209781 155209781 G - GBA Frame_Shift_Del p.P68Rfs*23 0.30 TCGA-VQ-A8PT-01 1 156453091 156453091 C T MEF2D 5'UTR 0.32 TCGA-VQ-A8PT-01 1 156622260 156622260 C A BCAN Silent p.L506L 0.47 TCGA-VQ-A8PT-01 1 156642264 156642264 A T NES Missense_Mutation p.N572K 0.34 tolerated(0.05) benign(0.037) TCGA-VQ-A8PT-01 1 158819027 158819027 A G MNDA Nonstop_Mutation p.*408Wext*13 0.41 TCGA-VQ-A8PT-01 1 158913677 158913677 A - PYHIN1 Frame_Shift_Del p.G369Efs*11 0.18 TCGA-VQ-A8PT-01 1 159170735 159170735 C - CADM3 3'UTR 0.22 TCGA-VQ-A8PT-01 1 159904042 159904042 C T IGSF9 Missense_Mutation p.A348T 0.31 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PT-01 1 16059123 16059123 G A PLEKHM2 Missense_Mutation p.S941N 0.44 tolerated(0.49) benign(0.044) TCGA-VQ-A8PT-01 1 161019047 161019047 G T ARHGAP30 Nonsense_Mutation p.C588* 0.28 TCGA-VQ-A8PT-01 1 161677019 161677019 A T FCRLA Missense_Mutation p.S6C 0.39 tolerated_low_confidence(0.09) benign(0) TCGA-VQ-A8PT-01 1 16262012 16262012 C A SPEN Missense_Mutation p.L3093I 0.33 probably_damaging(0.997) TCGA-VQ-A8PT-01 1 1635563 1635563 C T CDK11A Missense_Mutation p.R570Q 0.82 deleterious(0) unknown(0) TCGA-VQ-A8PT-01 1 167088549 167088549 G A DUSP27 Silent p.A167A 0.39 TCGA-VQ-A8PT-01 1 167666506 167666506 A T RCSD1 Silent p.G215G 0.20 TCGA-VQ-A8PT-01 1 167992276 167992276 G A DCAF6 Missense_Mutation p.E534K 0.38 deleterious_low_confidence(0.02) benign(0.371) TCGA-VQ-A8PT-01 1 169509717 169509717 G T F5 Missense_Mutation p.D1537E 0.34 tolerated(0.26) benign(0.073) TCGA-VQ-A8PT-01 1 169511442 169511442 A G F5 Silent p.T962T 0.40 TCGA-VQ-A8PT-01 1 169951977 169951977 G T KIFAP3 Missense_Mutation p.S513Y 0.36 deleterious(0.03) benign(0.325) TCGA-VQ-A8PT-01 1 174190250 174190250 C T RABGAP1L Silent p.A93A 0.41 TCGA-VQ-A8PT-01 1 175086249 175086249 C T TNN Missense_Mutation p.T765M 0.30 tolerated(0.05) benign(0.378) TCGA-VQ-A8PT-01 1 176918356 176918356 G A ASTN1 Silent p.D673D 0.26 TCGA-VQ-A8PT-01 1 178822767 178822767 C T ANGPTL1 Missense_Mutation p.G327S 0.25 deleterious(0) probably_damaging(1) TCGA-VQ-A8PT-01 1 179090981 179090981 G A ABL2 Missense_Mutation p.R237C 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A8PT-01 1 18023785 18023785 T C ARHGEF10L Silent p.F1250F 0.31 TCGA-VQ-A8PT-01 1 19491395 19491395 C T UBR4 Missense_Mutation p.R1470H 0.38 probably_damaging(0.933) TCGA-VQ-A8PT-01 1 1957115 1957115 C T GABRD Silent p.D136D 0.26 TCGA-VQ-A8PT-01 1 196706758 196706759 - G CFH Frame_Shift_Ins p.W920Mfs*8 0.21 TCGA-VQ-A8PT-01 1 196971767 196971767 C T CFHR5 Nonsense_Mutation p.R435* 0.24 TCGA-VQ-A8PT-01 1 197009826 197009826 T A F13B Missense_Mutation p.N593I 0.29 deleterious(0) probably_damaging(0.937) TCGA-VQ-A8PT-01 1 197070154 197070154 G A ASPM Nonsense_Mutation p.R2743* 0.32 TCGA-VQ-A8PT-01 1 201869403 201869403 T C LMOD1 Silent p.T246T 0.47 TCGA-VQ-A8PT-01 1 202894284 202894284 C A KLHL12 Missense_Mutation p.G3C 0.39 deleterious_low_confidence(0.01) benign(0) TCGA-VQ-A8PT-01 1 203045608 203045608 C A PPFIA4 3'UTR 0.43 TCGA-VQ-A8PT-01 1 203150364 203150364 G A CHI3L1 Missense_Mutation p.R213C 0.26 deleterious(0) possibly_damaging(0.706) TCGA-VQ-A8PT-01 1 204234069 204234069 C T PLEKHA6 Splice_Site p.X127_splice 0.32 TCGA-VQ-A8PT-01 1 204415184 204415184 C T PIK3C2B Missense_Mutation p.A860T 0.39 deleterious(0.03) possibly_damaging(0.474) TCGA-VQ-A8PT-01 1 20474697 20474697 A T PLA2G2F Missense_Mutation p.T147S 0.33 tolerated(0.57) probably_damaging(0.983) TCGA-VQ-A8PT-01 1 204913389 204913389 C T NFASC 5'UTR 0.38 TCGA-VQ-A8PT-01 1 205819057 205819057 G A PM20D1 Silent p.R48R 0.41 TCGA-VQ-A8PT-01 1 205899111 205899111 G A SLC26A9 Missense_Mutation p.T209M 0.28 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PT-01 1 207751341 207751341 G A CR1 Missense_Mutation p.G1577S 0.33 tolerated(0.22) benign(0.02) TCGA-VQ-A8PT-01 1 20977284 20977284 C T PINK1 3'UTR 0.50 TCGA-VQ-A8PT-01 1 209799045 209799045 C T LAMB3 Missense_Mutation p.A642T 0.33 tolerated(0.52) benign(0.001) TCGA-VQ-A8PT-01 1 21014376 21014376 G T KIF17 Silent p.A481A 0.46 TCGA-VQ-A8PT-01 1 212799334 212799334 T C FAM71A Missense_Mutation p.I372T 0.30 tolerated(0.09) benign(0.008) TCGA-VQ-A8PT-01 1 221057819 221057819 G A HLX Missense_Mutation p.A414T 0.39 tolerated_low_confidence(0.07) benign(0.003) TCGA-VQ-A8PT-01 1 222801059 222801059 A - MIA3 Frame_Shift_Del p.N168Tfs*15 0.12 TCGA-VQ-A8PT-01 1 226128797 226128798 - G LEFTY2 Frame_Shift_Ins p.L15Pfs*238 0.41 TCGA-VQ-A8PT-01 1 226573298 226573298 G A PARP1 Silent p.S306S 0.39 TCGA-VQ-A8PT-01 1 228468301 228468301 G A OBSCN Silent p.Q3096Q 0.33 TCGA-VQ-A8PT-01 1 228492056 228492056 G A OBSCN Silent p.G4685G 0.33 TCGA-VQ-A8PT-01 1 228494661 228494661 G A OBSCN Missense_Mutation p.A4953T 0.60 probably_damaging(0.972) TCGA-VQ-A8PT-01 1 228547657 228547657 C T OBSCN Intron 0.56 TCGA-VQ-A8PT-01 1 23111462 23111462 T C EPHB2 Missense_Mutation p.V235A 0.39 tolerated(0.75) benign(0.041) TCGA-VQ-A8PT-01 1 232144685 232144685 C - DISC1 Frame_Shift_Del p.R735Gfs*12 0.26 TCGA-VQ-A8PT-01 1 233086442 233086442 C - NTPCR 5'UTR 0.15 TCGA-VQ-A8PT-01 1 233802434 233802434 C T KCNK1 Missense_Mutation p.T150M 0.39 deleterious(0.03) probably_damaging(0.995) TCGA-VQ-A8PT-01 1 235887400 235887400 T A LYST Missense_Mutation p.Q3081H 0.28 deleterious(0) probably_damaging(0.99) TCGA-VQ-A8PT-01 1 236889258 236889258 G A ACTN2 Silent p.L158L 0.35 TCGA-VQ-A8PT-01 1 236925901 236925901 C T ACTN2 Silent p.Y889Y 0.64 TCGA-VQ-A8PT-01 1 237026799 237026799 G A MTR Missense_Mutation p.V784M 0.22 deleterious(0) probably_damaging(1) TCGA-VQ-A8PT-01 1 241753558 241753558 A - KMO Frame_Shift_Del p.K420Rfs*2 0.22 TCGA-VQ-A8PT-01 1 247320008 247320008 G A ZNF124 Missense_Mutation p.R244C 0.34 deleterious(0.01) probably_damaging(0.947) TCGA-VQ-A8PT-01 1 247587375 247587375 C T NLRP3 Silent p.D210D 0.29 TCGA-VQ-A8PT-01 1 247751918 247751918 T C OR2G2 Missense_Mutation p.V86A 0.39 tolerated(0.09) benign(0.05) TCGA-VQ-A8PT-01 1 248308905 248308905 C A OR2M5 Silent p.G152G 0.31 TCGA-VQ-A8PT-01 1 248366875 248366875 G A OR2M3 Missense_Mutation p.C169Y 0.40 deleterious(0) possibly_damaging(0.624) TCGA-VQ-A8PT-01 1 249141682 249141682 A G ZNF672 Missense_Mutation p.Y70C 0.23 deleterious(0.03) probably_damaging(1) TCGA-VQ-A8PT-01 1 26595059 26595059 T A CEP85 Missense_Mutation p.I476N 0.40 deleterious(0) probably_damaging(0.993) TCGA-VQ-A8PT-01 1 27058004 27058004 C T ARID1A Missense_Mutation p.S571L 0.33 benign(0) TCGA-VQ-A8PT-01 1 27105931 27105931 G - ARID1A Frame_Shift_Del p.D1850Tfs*33 0.29 TCGA-VQ-A8PT-01 1 27106804 27106804 C - ARID1A Frame_Shift_Del p.F2141Sfs*59 0.28 TCGA-VQ-A8PT-01 1 27874861 27874861 C T AHDC1 Missense_Mutation p.A1256T 0.38 tolerated(0.47) benign(0) TCGA-VQ-A8PT-01 1 27878166 27878166 C T AHDC1 Missense_Mutation p.R154H 0.41 tolerated_low_confidence(0.28) possibly_damaging(0.715) TCGA-VQ-A8PT-01 1 28282580 28282580 C T SMPDL3B Missense_Mutation p.T331I 0.31 deleterious(0.02) possibly_damaging(0.883) TCGA-VQ-A8PT-01 1 29651765 29651765 G A PTPRU Missense_Mutation p.C1402Y 0.32 tolerated(1) benign(0.02) TCGA-VQ-A8PT-01 1 31532285 31532285 C T PUM1 Silent p.G43G 0.28 TCGA-VQ-A8PT-01 1 31819506 31819506 C T ZCCHC17 Nonsense_Mutation p.R113* 0.37 TCGA-VQ-A8PT-01 1 32122666 32122666 C T COL16A1 Missense_Mutation p.E1342K 0.32 unknown(0) TCGA-VQ-A8PT-01 1 32192982 32192982 T G BAI2 3'UTR 0.27 TCGA-VQ-A8PT-01 1 32207652 32207652 A G BAI2 Splice_Site p.X473_splice 0.36 TCGA-VQ-A8PT-01 1 33359169 33359169 C T HPCA Silent p.D141D 0.32 TCGA-VQ-A8PT-01 1 33558888 33558888 T C ADC Missense_Mutation p.V153A 0.34 deleterious(0) possibly_damaging(0.726) TCGA-VQ-A8PT-01 1 33832792 33832792 G A PHC2 Missense_Mutation p.P301S 0.41 deleterious(0.03) benign(0.011) TCGA-VQ-A8PT-01 1 34204792 34204792 C T CSMD2 Missense_Mutation p.V733I 0.34 tolerated(1) benign(0.005) TCGA-VQ-A8PT-01 1 3440718 3440718 G A MEGF6 Missense_Mutation p.R192W 0.41 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PT-01 1 35334321 35334321 G - DLGAP3 Frame_Shift_Del p.C791Afs*96 0.28 TCGA-VQ-A8PT-01 1 35477560 35477560 C T ZMYM6 Silent p.Q331Q 0.39 TCGA-VQ-A8PT-01 1 36553577 36553577 C T TEKT2 Silent p.D361D 0.29 TCGA-VQ-A8PT-01 1 36785381 36785381 A G SH3D21 Missense_Mutation p.S373G 0.41 tolerated(0.18) benign(0.001) TCGA-VQ-A8PT-01 1 36898070 36898070 G A OSCP1 Missense_Mutation p.P130S 0.41 tolerated(0.14) benign(0.016) TCGA-VQ-A8PT-01 1 37270563 37270563 G A GRIK3 Intron 0.42 TCGA-VQ-A8PT-01 1 37948580 37948580 C T ZC3H12A Missense_Mutation p.R390C 0.25 tolerated(0.06) benign(0.326) TCGA-VQ-A8PT-01 1 39352092 39352093 TC - RHBDL2 3'UTR 0.30 TCGA-VQ-A8PT-01 1 39877464 39877464 T - KIAA0754 Frame_Shift_Del p.S375Qfs*5 0.31 TCGA-VQ-A8PT-01 1 40558134 40558135 - T PPT1 Frame_Shift_Ins p.M57Nfs*45 0.28 TCGA-VQ-A8PT-01 1 40981058 40981058 T G EXO5 Missense_Mutation p.L281R 0.37 tolerated(0.06) possibly_damaging(0.824) TCGA-VQ-A8PT-01 1 41304155 41304155 C T KCNQ4 Missense_Mutation p.T683M 0.46 deleterious(0.01) probably_damaging(0.992) TCGA-VQ-A8PT-01 1 41486017 41486017 C T SLFNL1 Missense_Mutation p.A106T 0.28 tolerated(0.08) benign(0.099) TCGA-VQ-A8PT-01 1 41978726 41978726 C T HIVEP3 Missense_Mutation p.E2056K 0.42 benign(0.002) TCGA-VQ-A8PT-01 1 42922565 42922565 C T PPCS Missense_Mutation p.P110L 0.40 tolerated(0.05) benign(0) TCGA-VQ-A8PT-01 1 43224917 43224917 A G LEPRE1 Missense_Mutation p.Y255H 0.35 tolerated(0.21) possibly_damaging(0.729) TCGA-VQ-A8PT-01 1 43826214 43826214 T C CDC20 Silent p.S266S 0.35 TCGA-VQ-A8PT-01 1 43830095 43830095 G A ELOVL1 Missense_Mutation p.S173F 0.37 tolerated(1) benign(0.37) TCGA-VQ-A8PT-01 1 44057511 44057511 C T PTPRF Silent p.A520A 0.38 TCGA-VQ-A8PT-01 1 44085053 44085053 A G PTPRF Missense_Mutation p.T1581A 0.31 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8PT-01 1 44363950 44363950 C A ST3GAL3 Silent p.R216R 0.23 TCGA-VQ-A8PT-01 1 44415521 44415521 C T IPO13 Silent p.L173L 0.42 TCGA-VQ-A8PT-01 1 44422069 44422069 G T IPO13 Missense_Mutation p.G300V 0.41 tolerated(0.08) benign(0.062) TCGA-VQ-A8PT-01 1 45270116 45270116 G A PLK3 Missense_Mutation p.R483H 0.37 tolerated(0.66) benign(0.01) TCGA-VQ-A8PT-01 1 45472464 45472464 C - HECTD3 Frame_Shift_Del p.G542Vfs*63 0.29 TCGA-VQ-A8PT-01 1 45793010 45793010 G T HPDL Nonsense_Mutation p.E64* 0.70 TCGA-VQ-A8PT-01 1 47348895 47348895 T C CYP4Z2P RNA 0.32 TCGA-VQ-A8PT-01 1 47583656 47583656 G T CYP4Z1 3'UTR 0.58 TCGA-VQ-A8PT-01 1 52305901 52305901 T - NRD1 Frame_Shift_Del p.K209Nfs*14 0.29 TCGA-VQ-A8PT-01 1 55072855 55072855 C T ACOT11 Silent p.H473H 0.30 TCGA-VQ-A8PT-01 1 55451824 55451824 G A TMEM61 Missense_Mutation p.G24S 0.35 deleterious(0) probably_damaging(0.972) TCGA-VQ-A8PT-01 1 59248697 59248697 C T JUN Missense_Mutation p.A16T 0.42 tolerated(0.12) possibly_damaging(0.472) TCGA-VQ-A8PT-01 1 6257785 6257785 T - RPL22 Frame_Shift_Del p.K15Rfs*5 0.71 TCGA-VQ-A8PT-01 1 6314167 6314167 C A GPR153 Missense_Mutation p.G133C 0.38 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8PT-01 1 6520097 6520097 G T ESPN Missense_Mutation p.R819L 0.31 deleterious(0) possibly_damaging(0.809) TCGA-VQ-A8PT-01 1 68910343 68910343 G A RPE65 Silent p.Y122Y 0.31 TCGA-VQ-A8PT-01 1 70705169 70705171 AGG - SRSF11 In_Frame_Del p.R259del 0.24 TCGA-VQ-A8PT-01 1 74835209 74835209 C T FPGT-TNNI3K Missense_Mutation p.A650V 0.36 deleterious(0.03) probably_damaging(0.961) TCGA-VQ-A8PT-01 1 74905219 74905219 T C TNNI3K Missense_Mutation p.Y743H 0.39 deleterious(0.02) probably_damaging(0.92) TCGA-VQ-A8PT-01 1 74905279 74905279 G A TNNI3K Missense_Mutation p.E763K 0.33 tolerated(0.4) possibly_damaging(0.703) TCGA-VQ-A8PT-01 1 75596257 75596257 C T LHX8 5'UTR 0.35 TCGA-VQ-A8PT-01 1 7724804 7724804 G A CAMTA1 Missense_Mutation p.V733I 0.35 tolerated_low_confidence(0.16) benign(0.002) TCGA-VQ-A8PT-01 1 77876679 77876679 G A AK5 Missense_Mutation p.R302H 0.47 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8PT-01 1 7839806 7839806 T - VAMP3 3'UTR 0.40 TCGA-VQ-A8PT-01 1 78407864 78407864 C T NEXN Nonsense_Mutation p.Q544* 0.29 TCGA-VQ-A8PT-01 1 8395570 8395570 C T SLC45A1 Missense_Mutation p.P506L 0.33 tolerated(0.11) benign(0.15) TCGA-VQ-A8PT-01 1 86249817 86249817 G A COL24A1 Silent p.F1400F 0.32 TCGA-VQ-A8PT-01 1 86959938 86959938 G A CLCA1 Silent p.A583A 0.36 TCGA-VQ-A8PT-01 1 91731621 91731621 T C HFM1 Silent p.L1309L 0.32 TCGA-VQ-A8PT-01 1 91989659 91989659 A G CDC7 Silent p.R464R 0.36 TCGA-VQ-A8PT-01 1 92729254 92729254 C T GLMN Silent p.Q445Q 0.41 TCGA-VQ-A8PT-01 1 949832 949832 G A ISG15 Missense_Mutation p.G158S 0.37 tolerated(0.62) benign(0.009) TCGA-VQ-A8PT-01 1 97278882 97278882 A G PTBP2 Missense_Mutation p.Q506R 0.32 tolerated(0.12) probably_damaging(0.985) TCGA-VQ-A8PT-01 20 1115872 1115872 C - PSMF1 Frame_Shift_Del p.P160Lfs*39 0.39 TCGA-VQ-A8PT-01 20 13982967 13982967 G A MACROD2 Missense_Mutation p.R27H 0.35 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PT-01 20 23016993 23016993 C T SSTR4 Silent p.T291T 0.25 TCGA-VQ-A8PT-01 20 2377265 2377265 G A TGM6 Missense_Mutation p.G180R 0.40 deleterious(0) possibly_damaging(0.648) TCGA-VQ-A8PT-01 20 25388527 25388527 T A GINS1 Missense_Mutation p.F24Y 0.29 tolerated(0.49) benign(0.037) TCGA-VQ-A8PT-01 20 25457378 25457378 C T NINL Missense_Mutation p.R850H 0.30 tolerated(0.42) benign(0) TCGA-VQ-A8PT-01 20 2639139 2639139 A G IDH3B 3'UTR 0.32 TCGA-VQ-A8PT-01 20 30253692 30253692 C T BCL2L1 3'UTR 0.39 TCGA-VQ-A8PT-01 20 31022442 31022442 G - ASXL1 Frame_Shift_Del p.G645Vfs*58 0.33 TCGA-VQ-A8PT-01 20 31671539 31671539 C A BPIFB4 Missense_Mutation p.A179E 0.26 deleterious_low_confidence(0.01) probably_damaging(0.995) TCGA-VQ-A8PT-01 20 32257245 32257245 G A NECAB3 Missense_Mutation p.P108L 0.40 deleterious(0) probably_damaging(0.988) TCGA-VQ-A8PT-01 20 32664877 32664877 C T RALY Silent p.G234G 0.38 TCGA-VQ-A8PT-01 20 33329080 33329081 AA - NCOA6 Frame_Shift_Del p.F1660Yfs*56 0.34 TCGA-VQ-A8PT-01 20 33586898 33586898 C T MYH7B Silent p.G1452G 0.67 TCGA-VQ-A8PT-01 20 34085857 34085857 G - CEP250 Frame_Shift_Del p.G1207Efs*27 0.35 TCGA-VQ-A8PT-01 20 34090399 34090399 G T CEP250 Missense_Mutation p.R1401I 0.30 probably_damaging(0.937) TCGA-VQ-A8PT-01 20 3730787 3730787 C T HSPA12B Missense_Mutation p.A405V 0.27 deleterious(0.01) benign(0.065) TCGA-VQ-A8PT-01 20 39794158 39794158 C T PLCG1 Silent p.D526D 0.43 TCGA-VQ-A8PT-01 20 40743913 40743913 C T PTPRT Missense_Mutation p.G1009R 0.29 tolerated(0.08) probably_damaging(1) TCGA-VQ-A8PT-01 20 40827889 40827889 T C PTPRT Missense_Mutation p.N828D 0.39 deleterious(0.02) benign(0.057) TCGA-VQ-A8PT-01 20 42354972 42354972 A - GTSF1L Frame_Shift_Del p.P122Lfs*50 0.14 TCGA-VQ-A8PT-01 20 43042405 43042405 A G HNF4A Missense_Mutation p.N153D 0.48 tolerated(0.39) benign(0.028) TCGA-VQ-A8PT-01 20 43243321 43243321 A C PKIG Missense_Mutation p.M42L 0.44 tolerated(0.4) benign(0.007) TCGA-VQ-A8PT-01 20 43249690 43249690 A G ADA Missense_Mutation p.M315T 0.42 deleterious(0) probably_damaging(0.924) TCGA-VQ-A8PT-01 20 44037162 44037162 C T DBNDD2 Missense_Mutation p.R121W 0.44 deleterious(0) probably_damaging(1) TCGA-VQ-A8PT-01 20 44098469 44098469 C T WFDC2 Silent p.S16S 0.21 TCGA-VQ-A8PT-01 20 44639798 44639798 T C MMP9 Silent p.F222F 0.36 TCGA-VQ-A8PT-01 20 47989863 47989863 G A KCNB1 Missense_Mutation p.A745V 0.35 tolerated_low_confidence(0.58) benign(0.001) TCGA-VQ-A8PT-01 20 4843539 4843539 G A SLC23A2 Silent p.R457R 0.59 TCGA-VQ-A8PT-01 20 50140093 50140093 G A NFATC2 Silent p.D229D 0.36 TCGA-VQ-A8PT-01 20 50342443 50342443 A - ATP9A Frame_Shift_Del p.F81Sfs*17 0.17 TCGA-VQ-A8PT-01 20 5170825 5170825 T C CDS2 Missense_Mutation p.L428P 0.36 deleterious(0) probably_damaging(0.986) TCGA-VQ-A8PT-01 20 52570142 52570142 C A BCAS1 Missense_Mutation p.K503N 0.32 deleterious(0) probably_damaging(0.978) TCGA-VQ-A8PT-01 20 57245599 57245599 T - STX16 Frame_Shift_Del p.F198Sfs*7 0.31 TCGA-VQ-A8PT-01 20 57564938 57564938 C T NELFCD Missense_Mutation p.T246M 0.40 deleterious(0) probably_damaging(0.989) TCGA-VQ-A8PT-01 20 57599429 57599429 T C TUBB1 Missense_Mutation p.I316T 0.38 deleterious_low_confidence(0.01) probably_damaging(0.991) TCGA-VQ-A8PT-01 20 58564154 58564154 G A CDH26 Missense_Mutation p.E407K 0.34 deleterious(0.01) possibly_damaging(0.904) TCGA-VQ-A8PT-01 20 60508129 60508129 G A CDH4 Missense_Mutation p.V776I 0.42 tolerated(0.05) possibly_damaging(0.884) TCGA-VQ-A8PT-01 20 60913096 60913096 A G LAMA5 Missense_Mutation p.Y623H 0.52 benign(0.326) TCGA-VQ-A8PT-01 20 61438996 61438996 C T OGFR Intron 0.35 TCGA-VQ-A8PT-01 20 61919073 61919073 G A ARFGAP1 Missense_Mutation p.E365K 0.36 tolerated(0.39) benign(0.012) TCGA-VQ-A8PT-01 20 62551411 62551411 G A DNAJC5 Intron 0.31 TCGA-VQ-A8PT-01 20 62571621 62571621 C T UCKL1 Silent p.S483S 0.53 TCGA-VQ-A8PT-01 20 62606691 62606691 T G SAMD10 3'UTR 0.38 TCGA-VQ-A8PT-01 20 9546964 9546964 C - PAK7 Frame_Shift_Del p.G353Afs*49 0.27 TCGA-VQ-A8PT-01 21 10914389 10914389 A G TPTE Missense_Mutation p.S444P 0.09 tolerated(0.24) probably_damaging(0.916) TCGA-VQ-A8PT-01 21 15588536 15588536 G T RBM11 Missense_Mutation p.R10M 0.22 deleterious(0) possibly_damaging(0.87) TCGA-VQ-A8PT-01 21 19756076 19756076 C T TMPRSS15 Missense_Mutation p.V122I 0.33 tolerated(0.81) benign(0.001) TCGA-VQ-A8PT-01 21 27347406 27347406 C T APP Missense_Mutation p.A479T 0.32 deleterious(0) possibly_damaging(0.894) TCGA-VQ-A8PT-01 21 28210101 28210101 T C ADAMTS1 Missense_Mutation p.T901A 0.44 tolerated(0.57) benign(0.403) TCGA-VQ-A8PT-01 21 28210811 28210811 G A ADAMTS1 Silent p.C717C 0.21 TCGA-VQ-A8PT-01 21 30307524 30307524 C T LTN1 Silent p.V1640V 0.29 TCGA-VQ-A8PT-01 21 31863854 31863854 A G KRTAP19-3 3'UTR 0.45 TCGA-VQ-A8PT-01 21 31874242 31874242 C T KRTAP19-5 Missense_Mutation p.R56H 0.39 tolerated_low_confidence(0.17) unknown(0) TCGA-VQ-A8PT-01 21 33043955 33043956 CT - SCAF4 Frame_Shift_Del p.E1067Vfs*3 0.24 TCGA-VQ-A8PT-01 21 33073336 33073336 G - SCAF4 Frame_Shift_Del p.P250Hfs*96 0.21 TCGA-VQ-A8PT-01 21 33318424 33318424 C T HUNK Silent p.Y229Y 0.40 TCGA-VQ-A8PT-01 21 33949091 33949091 C - TCP10L Frame_Shift_Del p.G214Vfs*26 0.31 TCGA-VQ-A8PT-01 21 34926502 34926502 T C SON Silent p.I1655I 0.32 TCGA-VQ-A8PT-01 21 35144515 35144515 G T ITSN1 Missense_Mutation p.R398L 0.50 tolerated(0.22) unknown(0) TCGA-VQ-A8PT-01 21 35169710 35169710 G A ITSN1 Nonsense_Mutation p.W660* 0.37 TCGA-VQ-A8PT-01 21 38570229 38570229 C - TTC3 Frame_Shift_Del p.V1920* 0.28 TCGA-VQ-A8PT-01 21 39755427 39755427 A - ERG Frame_Shift_Del p.F453Lfs*59 0.29 TCGA-VQ-A8PT-01 21 40568803 40568803 C T BRWD1 Silent p.E2064E 0.39 TCGA-VQ-A8PT-01 21 41032798 41032798 G A B3GALT5 Silent p.A104A 0.33 TCGA-VQ-A8PT-01 21 43706037 43706037 C T ABCG1 Silent p.C302C 0.34 TCGA-VQ-A8PT-01 21 45876618 45876618 G A LRRC3 Missense_Mutation p.A31T 0.35 tolerated(0.67) benign(0.001) TCGA-VQ-A8PT-01 21 46311847 46311847 G A ITGB2 Missense_Mutation p.A430V 0.31 tolerated(0.07) possibly_damaging(0.907) TCGA-VQ-A8PT-01 21 46888199 46888199 C - COL18A1 Frame_Shift_Del p.P232Rfs*72 0.29 TCGA-VQ-A8PT-01 21 47424035 47424035 T - COL6A1 3'UTR 0.42 TCGA-VQ-A8PT-01 21 47805809 47805809 G A PCNT Silent p.V1125V 0.37 TCGA-VQ-A8PT-01 21 47817323 47817323 C G PCNT Missense_Mutation p.A1454G 0.34 possibly_damaging(0.739) TCGA-VQ-A8PT-01 21 47863846 47863847 CA - PCNT Frame_Shift_Del p.H3276Qfs*59 0.24 TCGA-VQ-A8PT-01 22 18894238 18894238 G T DGCR6 Missense_Mutation p.V91L 0.39 tolerated(0.32) benign(0.044) TCGA-VQ-A8PT-01 22 19121955 19121955 C T DGCR14 Silent p.S395S 0.47 TCGA-VQ-A8PT-01 22 19127216 19127216 C T DGCR14 Silent p.P199P 0.32 TCGA-VQ-A8PT-01 22 19163948 19163950 CTT - SLC25A1 In_Frame_Del p.K269del 0.37 TCGA-VQ-A8PT-01 22 20130522 20130522 C G ZDHHC8 Missense_Mutation p.P457A 0.23 tolerated(0.3) possibly_damaging(0.631) TCGA-VQ-A8PT-01 22 20936976 20936976 C - MED15 Frame_Shift_Del p.Q453Sfs*41 0.35 TCGA-VQ-A8PT-01 22 22055353 22055353 G A YPEL1 3'UTR 0.46 TCGA-VQ-A8PT-01 22 22869142 22869142 A G ZNF280A Silent p.N271N 0.33 TCGA-VQ-A8PT-01 22 24219406 24219406 A - SLC2A11 Intron 0.14 TCGA-VQ-A8PT-01 22 24562617 24562617 G A CABIN1 Missense_Mutation p.R1673H 0.14 tolerated(0.23) benign(0.001) TCGA-VQ-A8PT-01 22 25297904 25297904 G A SGSM1 Silent p.K960K 0.19 TCGA-VQ-A8PT-01 22 25750778 25750778 G A LRP5L Missense_Mutation p.A147V 0.27 tolerated(1) benign(0.002) TCGA-VQ-A8PT-01 22 29139874 29139874 C A HSCB Missense_Mutation p.R81S 0.42 tolerated(0.06) benign(0.067) TCGA-VQ-A8PT-01 22 29446275 29446275 G - ZNRF3 Frame_Shift_Del p.G704Afs*69 0.28 TCGA-VQ-A8PT-01 22 30077452 30077452 G A NF2 Silent p.K533K 0.31 TCGA-VQ-A8PT-01 22 30863033 30863035 ATC - SEC14L3 In_Frame_Del p.M151del 0.43 TCGA-VQ-A8PT-01 22 30864640 30864640 C T SEC14L3 Missense_Mutation p.R93H 0.39 tolerated(0.42) benign(0.015) TCGA-VQ-A8PT-01 22 30951165 30951166 - C GAL3ST1 Frame_Shift_Ins p.H350Pfs*93 0.35 TCGA-VQ-A8PT-01 22 31333861 31333861 C T MORC2 Missense_Mutation p.R375Q 0.37 deleterious(0.01) possibly_damaging(0.751) TCGA-VQ-A8PT-01 22 31529085 31529085 T C INPP5J Missense_Mutation p.F364S 0.33 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PT-01 22 31661933 31661933 C T LIMK2 Missense_Mutation p.R265C 0.20 deleterious(0) probably_damaging(0.932) TCGA-VQ-A8PT-01 22 33253252 33253252 C T TIMP3 Missense_Mutation p.T74I 0.38 deleterious(0.01) benign(0.027) TCGA-VQ-A8PT-01 22 36692978 36692978 G A MYH9 Silent p.S1061S 0.35 TCGA-VQ-A8PT-01 22 37332599 37332599 C T CSF2RB Silent p.S491S 0.41 TCGA-VQ-A8PT-01 22 37469594 37469594 G A TMPRSS6 Silent p.S520S 0.32 TCGA-VQ-A8PT-01 22 37603632 37603632 G A SSTR3 Missense_Mutation p.R71W 0.42 deleterious(0.01) benign(0.052) TCGA-VQ-A8PT-01 22 38229689 38229689 A G ANKRD54 Splice_Site p.X183_splice 0.34 TCGA-VQ-A8PT-01 22 38321832 38321832 C T MICALL1 Missense_Mutation p.T416M 0.45 deleterious(0.02) benign(0.136) TCGA-VQ-A8PT-01 22 38882020 38882020 T C DDX17 Missense_Mutation p.T706A 0.47 tolerated_low_confidence(0.19) benign(0.08) TCGA-VQ-A8PT-01 22 38882433 38882433 C T DDX17 Missense_Mutation p.R568H 0.43 deleterious_low_confidence(0.04) probably_damaging(0.978) TCGA-VQ-A8PT-01 22 39355683 39355683 C T APOBEC3A Missense_Mutation p.H56Y 0.12 tolerated(1) benign(0.021) TCGA-VQ-A8PT-01 22 39355684 39355684 A G APOBEC3A Missense_Mutation p.H56R 0.12 tolerated(0.48) benign(0) TCGA-VQ-A8PT-01 22 39824173 39824173 C - TAB1 Frame_Shift_Del p.T433Pfs*9 0.24 TCGA-VQ-A8PT-01 22 40662480 40662480 G - TNRC6B Frame_Shift_Del p.E751Rfs*41 0.31 TCGA-VQ-A8PT-01 22 40816932 40816932 T A MKL1 Missense_Mutation p.Q267L 0.27 deleterious(0.02) possibly_damaging(0.885) TCGA-VQ-A8PT-01 22 41924647 41924647 G A ACO2 3'UTR 0.30 TCGA-VQ-A8PT-01 22 42289201 42289201 C - SREBF2 Frame_Shift_Del p.L765Wfs*13 0.25 TCGA-VQ-A8PT-01 22 42805488 42805488 G T NFAM1 Missense_Mutation p.L173M 0.05 deleterious(0.04) probably_damaging(0.957) TCGA-VQ-A8PT-01 22 43032869 43032869 C T CYB5R3 Intron 0.23 TCGA-VQ-A8PT-01 22 43213780 43213780 T - ARFGAP3 Frame_Shift_Del p.N299Mfs*22 0.45 TCGA-VQ-A8PT-01 22 43614261 43614261 C T SCUBE1 Missense_Mutation p.V631I 0.33 tolerated(0.11) benign(0.003) TCGA-VQ-A8PT-01 22 43821213 43821213 G T MPPED1 Missense_Mutation p.Q74H 0.50 tolerated(0.45) benign(0.001) TCGA-VQ-A8PT-01 22 44602247 44602247 T G PARVG Missense_Mutation p.F313V 0.43 deleterious(0) probably_damaging(0.982) TCGA-VQ-A8PT-01 22 45802656 45802656 G A SMC1B Missense_Mutation p.A130V 0.38 tolerated(0.09) probably_damaging(0.919) TCGA-VQ-A8PT-01 22 46656063 46656063 C T PKDREJ Missense_Mutation p.A1053T 0.31 tolerated(0.13) possibly_damaging(0.859) TCGA-VQ-A8PT-01 22 46860010 46860010 G A CELSR1 Silent p.N1259N 0.37 TCGA-VQ-A8PT-01 22 50682653 50682653 A G TUBGCP6 Missense_Mutation p.V79A 0.33 tolerated(0.11) probably_damaging(0.987) TCGA-VQ-A8PT-01 22 50720343 50720343 G A PLXNB2 Silent p.P1095P 0.40 TCGA-VQ-A8PT-01 22 50721870 50721870 C T PLXNB2 Missense_Mutation p.V859M 0.26 deleterious(0.01) probably_damaging(0.965) TCGA-VQ-A8PT-01 22 50927504 50927504 C T MIOX Silent p.C148C 0.37 TCGA-VQ-A8PT-01 2 10059231 10059231 A - TAF1B Frame_Shift_Del p.R447Efs*5 0.31 TCGA-VQ-A8PT-01 2 10074106 10074106 G A TAF1B Missense_Mutation p.R587Q 0.21 tolerated_low_confidence(0.16) unknown(0) TCGA-VQ-A8PT-01 2 102851371 102851371 A G IL1RL2 Missense_Mutation p.I438V 0.37 tolerated(0.31) benign(0.253) TCGA-VQ-A8PT-01 2 105713668 105713668 A G MRPS9 Missense_Mutation p.T329A 0.34 tolerated(0.55) benign(0.013) TCGA-VQ-A8PT-01 2 107423131 107423131 T - ST6GAL2 3'UTR 0.27 TCGA-VQ-A8PT-01 2 109109132 109109132 G T GCC2 Missense_Mutation p.D1445Y 0.42 deleterious(0) possibly_damaging(0.733) TCGA-VQ-A8PT-01 2 110922174 110922174 C A NPHP1 Nonsense_Mutation p.G288* 0.40 TCGA-VQ-A8PT-01 2 110962522 110962522 A T NPHP1 Missense_Mutation p.D8E 0.26 tolerated(0.07) benign(0.209) TCGA-VQ-A8PT-01 2 112944848 112944848 C - FBLN7 Frame_Shift_Del p.G364Afs*22 0.32 TCGA-VQ-A8PT-01 2 116497366 116497366 G A DPP10 Missense_Mutation p.R254K 0.47 deleterious(0.05) possibly_damaging(0.448) TCGA-VQ-A8PT-01 2 11720941 11720941 C T GREB1 Missense_Mutation p.P295L 0.45 deleterious(0) possibly_damaging(0.748) TCGA-VQ-A8PT-01 2 11733030 11733030 G A GREB1 Missense_Mutation p.A492T 0.50 tolerated(0.74) benign(0.002) TCGA-VQ-A8PT-01 2 11758690 11758690 C T GREB1 Missense_Mutation p.S1230F 0.38 tolerated(0.26) benign(0.299) TCGA-VQ-A8PT-01 2 127828168 127828168 G A BIN1 Silent p.P92P 0.25 TCGA-VQ-A8PT-01 2 128087513 128087513 T - MAP3K2 Frame_Shift_Del p.K150Nfs*5 0.25 TCGA-VQ-A8PT-01 2 128183728 128183728 A C PROC Silent p.T201T 0.34 TCGA-VQ-A8PT-01 2 128255718 128255718 T - IWS1 Frame_Shift_Del p.K521Nfs*11 0.22 TCGA-VQ-A8PT-01 2 12863620 12863620 G A TRIB2 Missense_Mutation p.G169R 0.36 tolerated(0.06) benign(0.108) TCGA-VQ-A8PT-01 2 128775308 128775308 C T SAP130 Silent p.P124P 0.42 TCGA-VQ-A8PT-01 2 130911432 130911432 G A SMPD4 Missense_Mutation p.P618L 0.38 tolerated(0.34) probably_damaging(0.992) TCGA-VQ-A8PT-01 2 131099485 131099485 C A CCDC115 Silent p.A48A 0.44 TCGA-VQ-A8PT-01 2 131521307 131521308 - G AMER3 Frame_Shift_Ins p.A557Gfs*54 0.41 TCGA-VQ-A8PT-01 2 136575165 136575165 G A LCT Nonsense_Mutation p.Q485* 0.42 TCGA-VQ-A8PT-01 2 141762944 141762944 G A LRP1B Silent p.A821A 0.42 TCGA-VQ-A8PT-01 2 148657041 148657041 A - ACVR2A Frame_Shift_Del p.D96Tfs*54 0.41 TCGA-VQ-A8PT-01 2 152107883 152107883 G A RBM43 Missense_Mutation p.A204V 0.38 tolerated(0.21) benign(0.002) TCGA-VQ-A8PT-01 2 152320541 152320541 A - RIF1 Frame_Shift_Del p.K1505Rfs*18 0.35 TCGA-VQ-A8PT-01 2 152499161 152499161 C A NEB Missense_Mutation p.R2767M 0.26 possibly_damaging(0.725) TCGA-VQ-A8PT-01 2 153515660 153515661 - T PRPF40A Frame_Shift_Ins p.R818Kfs*15 0.18 TCGA-VQ-A8PT-01 2 15567852 15567852 G A NBAS Silent p.C802C 0.30 TCGA-VQ-A8PT-01 2 158115853 158115853 C T GALNT5 Missense_Mutation p.T420M 0.35 tolerated(1) benign(0) TCGA-VQ-A8PT-01 2 158272443 158272443 G A CYTIP Missense_Mutation p.R276W 0.23 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PT-01 2 160019856 160019856 G A TANC1 Missense_Mutation p.D249N 0.42 tolerated(0.07) probably_damaging(0.987) TCGA-VQ-A8PT-01 2 160085319 160085319 G A TANC1 Missense_Mutation p.A1355T 0.35 deleterious(0) probably_damaging(1) TCGA-VQ-A8PT-01 2 166747121 166747121 C T TTC21B Missense_Mutation p.R1044Q 0.41 deleterious(0.03) benign(0.091) TCGA-VQ-A8PT-01 2 167168247 167168247 G - SCN9A Frame_Shift_Del p.P7Qfs*83 0.27 TCGA-VQ-A8PT-01 2 168074700 168074700 G A XIRP2 Missense_Mutation p.A250T 0.42 benign(0) TCGA-VQ-A8PT-01 2 169038512 169038512 G A STK39 Silent p.C99C 0.32 TCGA-VQ-A8PT-01 2 170865361 170865361 A - UBR3 Frame_Shift_Del p.N1428Ifs*32 0.23 TCGA-VQ-A8PT-01 2 171917589 171917589 A G TLK1 Splice_Site p.X136_splice 0.38 TCGA-VQ-A8PT-01 2 174104170 174104170 A G MLTK Missense_Mutation p.I435M 0.32 tolerated(0.11) benign(0.192) TCGA-VQ-A8PT-01 2 176995417 176995417 C - HOXD8 Frame_Shift_Del p.P110Lfs*67 0.36 TCGA-VQ-A8PT-01 2 179429982 179429982 G A TTN Silent p.G26959G 0.42 TCGA-VQ-A8PT-01 2 179472552 179472552 C T TTN Silent p.P17654P 0.48 TCGA-VQ-A8PT-01 2 179486691 179486691 T - TTN Frame_Shift_Del p.K14986Nfs*30 0.14 TCGA-VQ-A8PT-01 2 1795586 1795586 A - MYT1L 3'UTR 0.24 TCGA-VQ-A8PT-01 2 179569101 179569101 G A TTN Missense_Mutation p.T9999I 0.38 TCGA-VQ-A8PT-01 2 179656902 179656903 - T TTN Frame_Shift_Ins p.T520Nfs*12 0.29 TCGA-VQ-A8PT-01 2 180011154 180011154 A G SESTD1 Silent p.V204V 0.43 TCGA-VQ-A8PT-01 2 182399557 182399557 A G ITGA4 Silent p.G966G 0.37 TCGA-VQ-A8PT-01 2 183730855 183730855 G A FRZB Silent p.Y142Y 0.32 TCGA-VQ-A8PT-01 2 18745256 18745256 G A NT5C1B Missense_Mutation p.R547C 0.41 deleterious(0.01) possibly_damaging(0.751) TCGA-VQ-A8PT-01 2 187521085 187521085 G - ITGAV Frame_Shift_Del p.G561Dfs*2 0.24 TCGA-VQ-A8PT-01 2 189904067 189904067 C T COL5A2 Missense_Mutation p.D1286N 0.26 unknown(0) TCGA-VQ-A8PT-01 2 189916942 189916942 C A COL5A2 Nonsense_Mutation p.G909* 0.45 TCGA-VQ-A8PT-01 2 191231492 191231492 G T INPP1 Missense_Mutation p.G113C 0.22 deleterious(0) probably_damaging(0.976) TCGA-VQ-A8PT-01 2 196664131 196664131 G - DNAH7 Frame_Shift_Del p.F3415Lfs*3 0.30 TCGA-VQ-A8PT-01 2 196723221 196723221 C T DNAH7 Missense_Mutation p.A2682T 0.28 deleterious(0) probably_damaging(1) TCGA-VQ-A8PT-01 2 196866535 196866535 T - DNAH7 Frame_Shift_Del p.K346Sfs*23 0.29 TCGA-VQ-A8PT-01 2 197654614 197654615 - A GTF3C3 Frame_Shift_Ins p.C239Lfs*7 0.21 TCGA-VQ-A8PT-01 2 20182277 20182277 C T WDR35 Missense_Mutation p.G54D 0.49 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A8PT-01 2 202899700 202899700 C T FZD7 Silent p.C110C 0.37 TCGA-VQ-A8PT-01 2 204821482 204821482 A - ICOS Frame_Shift_Del p.K167Rfs*17 0.32 TCGA-VQ-A8PT-01 2 211502500 211502500 T G CPS1 Missense_Mutation p.L927R 0.40 deleterious(0.01) possibly_damaging(0.746) TCGA-VQ-A8PT-01 2 21234160 21234160 C A APOB Missense_Mutation p.Q1860H 0.35 possibly_damaging(0.707) TCGA-VQ-A8PT-01 2 215301475 215301475 C T VWC2L Silent p.C171C 0.30 TCGA-VQ-A8PT-01 2 215843156 215843156 T - ABCA12 Frame_Shift_Del p.N1671Ifs*4 0.32 TCGA-VQ-A8PT-01 2 215843575 215843575 C T ABCA12 Missense_Mutation p.D1644N 0.28 deleterious(0.04) benign(0.007) TCGA-VQ-A8PT-01 2 217543641 217543641 C T IGFBP5 Missense_Mutation p.G167R 0.28 deleterious(0.01) benign(0.042) TCGA-VQ-A8PT-01 2 219134766 219134766 G - AAMP Frame_Shift_Del p.P15Hfs*5 0.31 TCGA-VQ-A8PT-01 2 219513837 219513837 C T ZNF142 Missense_Mutation p.S265N 0.38 deleterious(0) possibly_damaging(0.517) TCGA-VQ-A8PT-01 2 219846740 219846740 G A FEV Silent p.Y122Y 0.57 TCGA-VQ-A8PT-01 2 220083382 220083382 C T ABCB6 Missense_Mutation p.G5D 0.25 tolerated_low_confidence(0.27) benign(0.389) TCGA-VQ-A8PT-01 2 222290791 222290791 C T EPHA4 Missense_Mutation p.R973Q 0.37 tolerated(0.1) probably_damaging(0.968) TCGA-VQ-A8PT-01 2 222322620 222322621 - C EPHA4 Frame_Shift_Ins p.V470Gfs*6 0.28 TCGA-VQ-A8PT-01 2 224629892 224629893 - ATCATA AP1S3 Intron 0.10 TCGA-VQ-A8PT-01 2 225639709 225639709 G A DOCK10 Missense_Mutation p.R1976C 0.27 tolerated(0.12) probably_damaging(0.999) TCGA-VQ-A8PT-01 2 228212097 228212097 G A MFF Missense_Mutation p.R250H 0.41 tolerated(0.4) benign(0.052) TCGA-VQ-A8PT-01 2 228881600 228881600 T C SPHKAP Missense_Mutation p.I1324V 0.34 deleterious(0) possibly_damaging(0.598) TCGA-VQ-A8PT-01 2 232390072 232390072 G A NMUR1 Silent p.S321S 0.47 TCGA-VQ-A8PT-01 2 232457830 232457830 G A C2orf57 Silent p.T56T 0.38 TCGA-VQ-A8PT-01 2 233194665 233194665 A G DIS3L2 Missense_Mutation p.M628V 0.15 tolerated(0.41) benign(0.014) TCGA-VQ-A8PT-01 2 233351292 233351292 G A ECEL1 Silent p.G24G 0.44 TCGA-VQ-A8PT-01 2 233704578 233704578 G - GIGYF2 Frame_Shift_Del p.G951Afs*23 0.23 TCGA-VQ-A8PT-01 2 233744135 233744135 C G NGEF 3'UTR 0.38 TCGA-VQ-A8PT-01 2 234749312 234749312 T C HJURP Missense_Mutation p.D705G 0.36 tolerated(1) benign(0) TCGA-VQ-A8PT-01 2 234851521 234851521 G A TRPM8 Intron 0.44 TCGA-VQ-A8PT-01 2 239079047 239079047 A - ILKAP 3'UTR 0.44 TCGA-VQ-A8PT-01 2 240024586 240024586 G A HDAC4 Missense_Mutation p.R702C 0.42 deleterious(0) probably_damaging(0.939) TCGA-VQ-A8PT-01 2 241420427 241420427 G T ANKMY1 Silent p.T902T 0.42 TCGA-VQ-A8PT-01 2 242066519 242066519 C - PASK Frame_Shift_Del p.G604Afs*4 0.35 TCGA-VQ-A8PT-01 2 242169257 242169257 G A HDLBP Silent p.S1237S 0.50 TCGA-VQ-A8PT-01 2 242275494 242275494 G A SEPT2 Missense_Mutation p.A108T 0.42 tolerated(0.06) possibly_damaging(0.703) TCGA-VQ-A8PT-01 2 25967100 25967100 T G ASXL2 Silent p.G702G 0.41 TCGA-VQ-A8PT-01 2 26684564 26684564 C T OTOF Missense_Mutation p.G1845R 0.44 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PT-01 2 27324119 27324120 - G CGREF1 3'UTR 0.26 TCGA-VQ-A8PT-01 2 29039020 29039020 A - SPDYA Frame_Shift_Del p.N49Ifs*23 0.27 TCGA-VQ-A8PT-01 2 29295855 29295855 G A C2orf71 Nonsense_Mutation p.R425* 0.32 TCGA-VQ-A8PT-01 2 32693800 32693802 ATC - BIRC6 In_Frame_Del p.I2027del 0.38 TCGA-VQ-A8PT-01 2 3425688 3425688 G A TRAPPC12 Missense_Mutation p.G401R 0.48 deleterious(0.02) possibly_damaging(0.769) TCGA-VQ-A8PT-01 2 40656180 40656180 C A SLC8A1 Missense_Mutation p.G414V 0.36 tolerated(0.05) benign(0.037) TCGA-VQ-A8PT-01 2 43452317 43452317 C A ZFP36L2 Missense_Mutation p.G209V 0.33 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PT-01 2 44548525 44548525 G A PREPL Silent p.F718F 0.20 TCGA-VQ-A8PT-01 2 46234699 46234699 A C PRKCE Missense_Mutation p.S388R 0.33 tolerated(0.34) benign(0.002) TCGA-VQ-A8PT-01 2 48035357 48035358 AG - FBXO11 Frame_Shift_Del p.L895Vfs*2 0.08 TCGA-VQ-A8PT-01 2 48050330 48050330 T C FBXO11 Missense_Mutation p.N523S 0.32 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PT-01 2 50724630 50724630 A G NRXN1 Missense_Mutation p.V947A 0.36 tolerated(0.07) possibly_damaging(0.486) TCGA-VQ-A8PT-01 2 54112847 54112847 G T PSME4 Missense_Mutation p.L1599I 0.24 tolerated(0.25) benign(0.1) TCGA-VQ-A8PT-01 2 55200233 55200233 G A RTN4 3'UTR 0.62 TCGA-VQ-A8PT-01 2 61710179 61710181 CTT - XPO1 In_Frame_Del p.E908del 0.36 TCGA-VQ-A8PT-01 2 62063183 62063183 A T FAM161A Missense_Mutation p.L605I 0.39 deleterious(0.02) probably_damaging(0.999) TCGA-VQ-A8PT-01 2 64863705 64863705 G A SERTAD2 Nonsense_Mutation p.R101* 0.44 TCGA-VQ-A8PT-01 2 68544417 68544417 G A CNRIP1 Missense_Mutation p.L68F 0.40 tolerated(0.1) benign(0.101) TCGA-VQ-A8PT-01 2 69046591 69046591 C T ARHGAP25 Intron 0.44 TCGA-VQ-A8PT-01 2 70409022 70409022 G A C2orf42 Silent p.G32G 0.50 TCGA-VQ-A8PT-01 2 71062877 71062877 C T CD207 Silent p.A10A 0.42 TCGA-VQ-A8PT-01 2 71211342 71211342 C T ANKRD53 Intron 0.27 TCGA-VQ-A8PT-01 2 71650282 71650282 G T ZNF638 Missense_Mutation p.G1213V 0.32 deleterious(0.01) benign(0.001) TCGA-VQ-A8PT-01 2 73518574 73518574 C T EGR4 3'UTR 0.29 TCGA-VQ-A8PT-01 2 74460564 74460564 C T SLC4A5 Missense_Mutation p.A854T 0.38 deleterious(0.02) probably_damaging(1) TCGA-VQ-A8PT-01 2 74779531 74779531 C T LOXL3 Silent p.Q77Q 0.40 TCGA-VQ-A8PT-01 2 80875036 80875036 C A CTNNA2 3'UTR 0.36 TCGA-VQ-A8PT-01 2 85097775 85097775 G A TRABD2A Silent p.S81S 0.20 TCGA-VQ-A8PT-01 2 86691336 86691336 A G KDM3A Missense_Mutation p.Q335R 0.41 tolerated_low_confidence(0.09) benign(0.39) TCGA-VQ-A8PT-01 2 88125275 88125275 G A RGPD2 5'UTR 0.45 TCGA-VQ-A8PT-01 2 88751466 88751466 G T FOXI3 RNA 0.25 TCGA-VQ-A8PT-01 2 90458619 90458619 C T CH17-132F21.1 Nonsense_Mutation p.Q99* 0.07 TCGA-VQ-A8PT-01 2 9614760 9614760 G T IAH1 Missense_Mutation p.G22V 0.30 deleterious(0) probably_damaging(0.992) TCGA-VQ-A8PT-01 2 96557461 96557461 C G ANKRD36C Missense_Mutation p.V358L 0.25 tolerated(0.41) benign(0.034) TCGA-VQ-A8PT-01 3 100362438 100362438 G A GPR128 Missense_Mutation p.A303T 0.25 tolerated(0.57) benign(0.003) TCGA-VQ-A8PT-01 3 100489591 100489591 G A ABI3BP Silent p.V868V 0.42 TCGA-VQ-A8PT-01 3 10320619 10320619 G A TATDN2 Silent p.T732T 0.38 TCGA-VQ-A8PT-01 3 10429997 10429997 C - ATP2B2 Frame_Shift_Del p.A291Lfs*14 0.25 TCGA-VQ-A8PT-01 3 105271342 105271342 C T ALCAM Missense_Mutation p.A526V 0.28 deleterious(0) probably_damaging(0.96) TCGA-VQ-A8PT-01 3 107520000 107520000 C T BBX Silent p.C870C 0.34 TCGA-VQ-A8PT-01 3 108822740 108822740 C - MORC1 Frame_Shift_Del p.G60Dfs*13 0.22 TCGA-VQ-A8PT-01 3 111639215 111639215 A - PHLDB2 Frame_Shift_Del p.N651Tfs*4 0.18 TCGA-VQ-A8PT-01 3 111693276 111693276 A G PHLDB2 Missense_Mutation p.N1210D 0.37 deleterious(0) possibly_damaging(0.781) TCGA-VQ-A8PT-01 3 112080537 112080537 G T CD200 3'UTR 0.38 TCGA-VQ-A8PT-01 3 113002372 113002372 G A BOC Missense_Mutation p.R849H 0.42 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PT-01 3 113804629 113804629 G A QTRTD1 Missense_Mutation p.G388R 0.41 tolerated(0.22) benign(0.019) TCGA-VQ-A8PT-01 3 113850246 113850246 G A DRD3 Missense_Mutation p.T242I 0.41 tolerated(0.19) benign(0.005) TCGA-VQ-A8PT-01 3 114058003 114058003 G - ZBTB20 Frame_Shift_Del p.P692Lfs*43 0.27 TCGA-VQ-A8PT-01 3 122287878 122287878 C T DTX3L Silent p.D314D 0.29 TCGA-VQ-A8PT-01 3 123345739 123345740 - T MYLK Frame_Shift_Ins p.D1722Rfs*68 0.34 TCGA-VQ-A8PT-01 3 124689552 124689552 C T HEG1 Missense_Mutation p.G1364R 0.35 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PT-01 3 126229603 126229603 G - UROC1 Frame_Shift_Del p.P54Rfs*32 0.25 TCGA-VQ-A8PT-01 3 127323547 127323547 G A MCM2 Silent p.E111E 0.46 TCGA-VQ-A8PT-01 3 127337988 127337988 G A MCM2 Missense_Mutation p.G711D 0.39 tolerated(0.76) benign(0.006) TCGA-VQ-A8PT-01 3 127774358 127774358 G A SEC61A1 Splice_Site p.X26_splice 0.32 TCGA-VQ-A8PT-01 3 129195232 129195232 G - IFT122 Frame_Shift_Del p.G350Vfs*71 0.33 TCGA-VQ-A8PT-01 3 129286622 129286622 G A PLXND1 Nonsense_Mutation p.R1298* 0.51 TCGA-VQ-A8PT-01 3 129547316 129547316 A G TMCC1 5'UTR 0.14 TCGA-VQ-A8PT-01 3 129694768 129694768 G A TRH Missense_Mutation p.A37T 0.24 tolerated(0.22) benign(0.048) TCGA-VQ-A8PT-01 3 13361419 13361419 T C NUP210 Missense_Mutation p.S1743G 0.33 tolerated(0.83) possibly_damaging(0.857) TCGA-VQ-A8PT-01 3 138178047 138178047 G T ESYT3 Missense_Mutation p.E200D 0.37 tolerated(0.08) probably_damaging(0.99) TCGA-VQ-A8PT-01 3 13896112 13896112 C T WNT7A Missense_Mutation p.A163T 0.38 tolerated(0.11) benign(0.184) TCGA-VQ-A8PT-01 3 140409822 140409822 T C TRIM42 Missense_Mutation p.C625R 0.43 deleterious(0) probably_damaging(1) TCGA-VQ-A8PT-01 3 14200195 14200195 G T XPC Silent p.P396P 0.44 TCGA-VQ-A8PT-01 3 145822075 145822075 C A PLOD2 Nonsense_Mutation p.G224* 0.35 TCGA-VQ-A8PT-01 3 147130314 147130314 C T ZIC1 Missense_Mutation p.P331L 0.25 deleterious(0.02) probably_damaging(1) TCGA-VQ-A8PT-01 3 148559690 148559690 C T CPB1 Silent p.F185F 0.42 TCGA-VQ-A8PT-01 3 148939579 148939579 T - CP Frame_Shift_Del p.M1? 0.31 TCGA-VQ-A8PT-01 3 15093987 15093987 C - MRPS25 Frame_Shift_Del p.K162Sfs*6 0.27 TCGA-VQ-A8PT-01 3 151545811 151545811 A G AADAC Missense_Mutation p.M351V 0.38 deleterious(0.01) possibly_damaging(0.817) TCGA-VQ-A8PT-01 3 15292885 15292885 G A CAPN7 3'UTR 0.47 TCGA-VQ-A8PT-01 3 15515740 15515740 C A COLQ Nonsense_Mutation p.E199* 0.34 TCGA-VQ-A8PT-01 3 155655472 155655472 G A GMPS Silent p.E691E 0.43 TCGA-VQ-A8PT-01 3 160150081 160150081 A T SMC4 Missense_Mutation p.Y1103F 0.29 tolerated(0.1) benign(0.177) TCGA-VQ-A8PT-01 3 160150238 160150238 G T SMC4 Missense_Mutation p.L1155F 0.28 deleterious(0) benign(0.367) TCGA-VQ-A8PT-01 3 16358673 16358673 T C RFTN1 Missense_Mutation p.S467G 0.30 tolerated(0.4) benign(0.004) TCGA-VQ-A8PT-01 3 165547421 165547421 G A BCHE Silent p.G467G 0.38 TCGA-VQ-A8PT-01 3 167068281 167068283 TCT - ZBBX In_Frame_Del p.E151del 0.43 TCGA-VQ-A8PT-01 3 169998128 169998128 A - PRKCI Frame_Shift_Del p.T276Qfs*7 0.30 TCGA-VQ-A8PT-01 3 170912340 170912340 C T TNIK Missense_Mutation p.A131T 0.33 deleterious(0) unknown(0) TCGA-VQ-A8PT-01 3 17202709 17202709 A G TBC1D5 Missense_Mutation p.S734P 0.32 tolerated_low_confidence(0.32) benign(0.003) TCGA-VQ-A8PT-01 3 172166189 172166189 C T GHSR Silent p.T5T 0.56 TCGA-VQ-A8PT-01 3 17300045 17300046 - T TBC1D5 Frame_Shift_Ins p.N428Kfs*15 0.50 TCGA-VQ-A8PT-01 3 179341832 179341832 T - NDUFB5 3'UTR 0.24 TCGA-VQ-A8PT-01 3 179525600 179525600 C T PEX5L Missense_Mutation p.R513H 0.35 deleterious(0) probably_damaging(0.993) TCGA-VQ-A8PT-01 3 180364963 180364963 T - CCDC39 Frame_Shift_Del p.K477Nfs*54 0.25 TCGA-VQ-A8PT-01 3 183097179 183097179 C T MCF2L2 Missense_Mutation p.A61T 0.35 deleterious(0.03) possibly_damaging(0.703) TCGA-VQ-A8PT-01 3 183209856 183209856 C T KLHL6 Silent p.T575T 0.07 TCGA-VQ-A8PT-01 3 184019832 184019832 A G PSMD2 Missense_Mutation p.Y226C 0.45 deleterious(0.01) benign(0.049) TCGA-VQ-A8PT-01 3 184042682 184042682 G A EIF4G1 Missense_Mutation p.R886H 0.30 deleterious(0.04) possibly_damaging(0.577) TCGA-VQ-A8PT-01 3 184073509 184073509 A - CLCN2 Frame_Shift_Del p.G382Afs*34 0.14 TCGA-VQ-A8PT-01 3 186015853 186015853 C T DGKG Missense_Mutation p.D104N 0.33 tolerated(0.16) benign(0.187) TCGA-VQ-A8PT-01 3 195594633 195594633 G - TNK2 Frame_Shift_Del p.Q909Rfs*2 0.41 TCGA-VQ-A8PT-01 3 195792399 195792399 C T TFRC Silent p.K371K 0.36 TCGA-VQ-A8PT-01 3 196743103 196743103 A G MFI2 Silent p.H346H 0.31 TCGA-VQ-A8PT-01 3 197703538 197703538 C A LMLN Silent p.A167A 0.29 TCGA-VQ-A8PT-01 3 26751758 26751758 A - LRRC3B Frame_Shift_Del p.T201Lfs*17 0.28 TCGA-VQ-A8PT-01 3 27463239 27463239 G A SLC4A7 Missense_Mutation p.T424M 0.28 deleterious(0.01) benign(0.425) TCGA-VQ-A8PT-01 3 32859698 32859698 G - TRIM71 Frame_Shift_Del p.G44Afs*55 0.39 TCGA-VQ-A8PT-01 3 33183986 33183986 G A CRTAP 3'UTR 0.30 TCGA-VQ-A8PT-01 3 37033280 37033280 T - EPM2AIP1 Frame_Shift_Del p.N430Ifs*2 0.29 TCGA-VQ-A8PT-01 3 38051197 38051197 C T PLCD1 Missense_Mutation p.A486T 0.26 tolerated(0.19) benign(0.258) TCGA-VQ-A8PT-01 3 38519656 38519656 C - ACVR2B Frame_Shift_Del p.T134Pfs*54 0.34 TCGA-VQ-A8PT-01 3 39133187 39133187 A - WDR48 Frame_Shift_Del p.D583Ifs*75 0.20 TCGA-VQ-A8PT-01 3 39438059 39438059 C T SLC25A38 3'UTR 0.39 TCGA-VQ-A8PT-01 3 44684020 44684020 C A ZNF197 Missense_Mutation p.H466Q 0.25 tolerated(0.32) benign(0.002) TCGA-VQ-A8PT-01 3 46747309 46747309 G A TMIE Silent p.P41P 0.27 TCGA-VQ-A8PT-01 3 47891427 47891427 C A DHX30 Silent p.T1134T 0.35 TCGA-VQ-A8PT-01 3 47963314 47963314 C T MAP4 Missense_Mutation p.S157N 0.33 deleterious(0.01) possibly_damaging(0.58) TCGA-VQ-A8PT-01 3 48630046 48630046 G A COL7A1 Silent p.Y311Y 0.36 TCGA-VQ-A8PT-01 3 48712080 48712080 C T NCKIPSD Missense_Mutation p.R689H 0.36 deleterious(0) probably_damaging(0.974) TCGA-VQ-A8PT-01 3 49044300 49044300 C A P4HTM Missense_Mutation p.A551D 0.27 deleterious_low_confidence(0.02) probably_damaging(0.981) TCGA-VQ-A8PT-01 3 49700785 49700785 C G BSN Missense_Mutation p.P3732A 0.45 unknown(0) TCGA-VQ-A8PT-01 3 49723544 49723544 C T MST1 Silent p.A366A 0.23 TCGA-VQ-A8PT-01 3 49742606 49742606 C T RNF123 Missense_Mutation p.R717C 0.36 deleterious(0.01) possibly_damaging(0.634) TCGA-VQ-A8PT-01 3 50005145 50005145 G - RBM6 Frame_Shift_Del p.G98Efs*56 0.27 TCGA-VQ-A8PT-01 3 51417604 51417604 C - DOCK3 Frame_Shift_Del p.P1852Qfs*45 0.25 TCGA-VQ-A8PT-01 3 51968520 51968520 G A RRP9 Missense_Mutation p.R410W 0.38 deleterious(0) possibly_damaging(0.776) TCGA-VQ-A8PT-01 3 52256416 52256416 C T TLR9 Missense_Mutation p.R793H 0.36 tolerated(0.57) benign(0.001) TCGA-VQ-A8PT-01 3 52547921 52547921 A C STAB1 Missense_Mutation p.D1124A 0.36 tolerated(0.13) benign(0.027) TCGA-VQ-A8PT-01 3 52610695 52610695 G A PBRM1 Nonsense_Mutation p.R1160* 0.42 TCGA-VQ-A8PT-01 3 52651313 52651313 G A PBRM1 Missense_Mutation p.R595W 0.29 deleterious(0) probably_damaging(0.972) TCGA-VQ-A8PT-01 3 52721350 52721350 C T GNL3 Missense_Mutation p.A54V 0.43 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PT-01 3 52858290 52858290 G A ITIH4 Silent p.L363L 0.36 TCGA-VQ-A8PT-01 3 53156534 53156534 C T RFT1 Nonsense_Mutation p.W104* 0.35 TCGA-VQ-A8PT-01 3 53265511 53265511 C T TKT Silent p.E276E 0.46 TCGA-VQ-A8PT-01 3 53855715 53855715 T C CHDH Missense_Mutation p.D315G 0.41 tolerated(0.35) benign(0.375) TCGA-VQ-A8PT-01 3 56026099 56026099 G A ERC2 Silent p.I747I 0.32 TCGA-VQ-A8PT-01 3 56667097 56667099 TCT - FAM208A In_Frame_Del p.E1241del 0.37 TCGA-VQ-A8PT-01 3 57509574 57509574 C T DNAH12 Missense_Mutation p.G70S 0.26 tolerated(0.47) benign(0.002) TCGA-VQ-A8PT-01 3 57651927 57651927 G A DENND6A Nonsense_Mutation p.R119* 0.05 TCGA-VQ-A8PT-01 3 58089788 58089788 G - FLNB Frame_Shift_Del p.G531Dfs*42 0.27 TCGA-VQ-A8PT-01 3 58487081 58487081 A G KCTD6 Missense_Mutation p.T146A 0.34 tolerated(0.6) benign(0.351) TCGA-VQ-A8PT-01 3 65342509 65342509 G A MAGI1 Silent p.R1311R 0.39 TCGA-VQ-A8PT-01 3 66430750 66430750 C T LRIG1 Silent p.T1073T 0.42 TCGA-VQ-A8PT-01 3 69097471 69097473 CTT - TMF1 In_Frame_Del p.E128del 0.30 TCGA-VQ-A8PT-01 3 69151084 69151084 C T ARL6IP5 Missense_Mutation p.R91C 0.34 deleterious(0.03) benign(0.027) TCGA-VQ-A8PT-01 3 74347243 74347243 G T CNTN3 Missense_Mutation p.P756T 0.24 tolerated(0.11) probably_damaging(0.986) TCGA-VQ-A8PT-01 3 74411173 74411173 G A CNTN3 Missense_Mutation p.S411L 0.30 deleterious(0.02) possibly_damaging(0.85) TCGA-VQ-A8PT-01 3 8609216 8609216 G A LMCD1 Missense_Mutation p.G344S 0.30 deleterious(0.03) probably_damaging(0.94) TCGA-VQ-A8PT-01 3 87017996 87017996 C T VGLL3 Missense_Mutation p.M227I 0.33 tolerated(0.41) benign(0.013) TCGA-VQ-A8PT-01 3 8809444 8809444 G A OXTR Missense_Mutation p.P144S 0.42 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PT-01 3 9052005 9052005 A G SRGAP3 Silent p.H738H 0.30 TCGA-VQ-A8PT-01 3 93803158 93803159 - A NSUN3 Frame_Shift_Ins p.Y113Ifs*49 0.25 TCGA-VQ-A8PT-01 3 98001748 98001748 T C OR5H2 Missense_Mutation p.M6T 0.25 deleterious(0.01) possibly_damaging(0.613) TCGA-VQ-A8PT-01 3 98510794 98510794 C A ST3GAL6 Missense_Mutation p.P289H 0.29 deleterious(0.03) probably_damaging(0.967) TCGA-VQ-A8PT-01 4 100003212 100003212 G A ADH5 Missense_Mutation p.P57L 0.54 deleterious(0.01) possibly_damaging(0.786) TCGA-VQ-A8PT-01 4 100461587 100461587 T G C4orf17 Silent p.S285S 0.30 TCGA-VQ-A8PT-01 4 10099439 10099439 C T WDR1 Missense_Mutation p.V152M 0.35 deleterious(0.01) probably_damaging(0.984) TCGA-VQ-A8PT-01 4 103718448 103718448 A - UBE2D3 3'Flank 0.30 TCGA-VQ-A8PT-01 4 106600759 106600759 A - ARHGEF38 3'UTR 0.25 TCGA-VQ-A8PT-01 4 107252843 107252843 A - AIMP1 Frame_Shift_Del p.K161Nfs*5 0.35 TCGA-VQ-A8PT-01 4 110932632 110932632 G T EGF 3'UTR 0.35 TCGA-VQ-A8PT-01 4 113468444 113468444 T C C4orf21 Silent p.L1865L 0.38 TCGA-VQ-A8PT-01 4 114267060 114267060 G A ANK2 Missense_Mutation p.R1418H 0.29 probably_damaging(1) TCGA-VQ-A8PT-01 4 123202837 123202837 C A KIAA1109 Missense_Mutation p.A2982D 0.37 benign(0.249) TCGA-VQ-A8PT-01 4 126371860 126371860 C T FAT4 Missense_Mutation p.A3230V 0.38 probably_damaging(0.992) TCGA-VQ-A8PT-01 4 126373213 126373213 T C FAT4 Missense_Mutation p.L3681P 0.38 probably_damaging(0.959) TCGA-VQ-A8PT-01 4 126402772 126402772 G A FAT4 Missense_Mutation p.S4232N 0.37 benign(0.003) TCGA-VQ-A8PT-01 4 128626946 128626946 T - INTU Frame_Shift_Del p.L591Cfs*2 0.31 TCGA-VQ-A8PT-01 4 134072763 134072763 C A PCDH10 Silent p.R490R 0.35 TCGA-VQ-A8PT-01 4 134073249 134073249 C T PCDH10 Missense_Mutation p.R652W 0.37 deleterious(0) probably_damaging(0.91) TCGA-VQ-A8PT-01 4 13543910 13543910 C T NKX3-2 Missense_Mutation p.A237T 0.38 deleterious(0.01) probably_damaging(0.927) TCGA-VQ-A8PT-01 4 1388799 1388799 C T CRIPAK Missense_Mutation p.P167L 0.22 tolerated(0.15) possibly_damaging(0.859) TCGA-VQ-A8PT-01 4 1388985 1388985 C T CRIPAK Missense_Mutation p.P229L 0.10 deleterious(0.02) possibly_damaging(0.859) TCGA-VQ-A8PT-01 4 140810679 140810679 C T MAML3 Silent p.Q637Q 0.27 TCGA-VQ-A8PT-01 4 141590859 141590859 C T TBC1D9 Missense_Mutation p.V456I 0.20 tolerated(0.26) benign(0.003) TCGA-VQ-A8PT-01 4 141677104 141677104 G A TBC1D9 Silent p.H32H 0.35 TCGA-VQ-A8PT-01 4 146025636 146025636 A G ABCE1 Silent p.E24E 0.41 TCGA-VQ-A8PT-01 4 146770520 146770520 C A ZNF827 Missense_Mutation p.Q725H 0.39 deleterious(0.01) probably_damaging(0.986) TCGA-VQ-A8PT-01 4 147861051 147861051 G A TTC29 Intron 0.29 TCGA-VQ-A8PT-01 4 148887848 148887848 A G ARHGAP10 Missense_Mutation p.K525R 0.32 tolerated(0.11) probably_damaging(0.99) TCGA-VQ-A8PT-01 4 151153541 151153541 A C DCLK2 Missense_Mutation p.N468T 0.41 deleterious(0) possibly_damaging(0.864) TCGA-VQ-A8PT-01 4 151749669 151749669 C T LRBA Missense_Mutation p.A1612T 0.33 tolerated(0.52) benign(0.014) TCGA-VQ-A8PT-01 4 153244156 153244156 C - FBXW7 Frame_Shift_Del p.S668Vfs*39 0.30 TCGA-VQ-A8PT-01 4 154513719 154513719 G A KIAA0922 Silent p.V635V 0.45 TCGA-VQ-A8PT-01 4 15504091 15504091 C T CC2D2A Missense_Mutation p.A96V 0.41 tolerated_low_confidence(0.05) benign(0.059) TCGA-VQ-A8PT-01 4 15841652 15841652 T - CD38 Frame_Shift_Del p.F222Lfs*17 0.28 TCGA-VQ-A8PT-01 4 159048513 159048513 A - FAM198B 3'UTR 0.24 TCGA-VQ-A8PT-01 4 160253693 160253693 G A RAPGEF2 Missense_Mutation p.R499H 0.31 deleterious(0.04) probably_damaging(0.953) TCGA-VQ-A8PT-01 4 16258001 16258001 C A TAPT1-AS1 RNA 0.53 TCGA-VQ-A8PT-01 4 170190128 170190129 CT - SH3RF1 Frame_Shift_Del p.R79Afs*27 0.29 TCGA-VQ-A8PT-01 4 170613460 170613460 A - CLCN3 Frame_Shift_Del p.R311Gfs*14 0.22 TCGA-VQ-A8PT-01 4 184603969 184603969 G T TRAPPC11 Nonsense_Mutation p.G400* 0.28 TCGA-VQ-A8PT-01 4 187175846 187175846 A - KLKB1 Frame_Shift_Del p.N474Tfs*13 0.27 TCGA-VQ-A8PT-01 4 187630302 187630302 C T FAT1 Missense_Mutation p.R227H 0.31 probably_damaging(1) TCGA-VQ-A8PT-01 4 20530692 20530692 C T SLIT2 Missense_Mutation p.P528L 0.38 deleterious(0) probably_damaging(1) TCGA-VQ-A8PT-01 4 2242749 2242749 A - HAUS3 5'UTR 0.22 TCGA-VQ-A8PT-01 4 25005417 25005417 G T LGI2 Missense_Mutation p.L432I 0.33 tolerated(0.15) probably_damaging(0.999) TCGA-VQ-A8PT-01 4 25394008 25394008 G A ANAPC4 Missense_Mutation p.A252T 0.27 deleterious(0.05) probably_damaging(0.995) TCGA-VQ-A8PT-01 4 2834734 2834734 C T SH3BP2 Silent p.D559D 0.39 TCGA-VQ-A8PT-01 4 2949270 2949270 G A NOP14 Silent p.V494V 0.14 TCGA-VQ-A8PT-01 4 39344054 39344054 T - RFC1 Frame_Shift_Del p.N81Mfs*61 0.27 TCGA-VQ-A8PT-01 4 39466783 39466783 G A LIAS Missense_Mutation p.G171S 0.40 deleterious(0.01) possibly_damaging(0.512) TCGA-VQ-A8PT-01 4 4864738 4864738 C T MSX1 Silent p.P260P 0.34 TCGA-VQ-A8PT-01 4 56885564 56885564 A - CEP135 Frame_Shift_Del p.K1021Nfs*29 0.28 TCGA-VQ-A8PT-01 4 57215981 57215981 T - AASDH Frame_Shift_Del p.R646Gfs*22 0.27 TCGA-VQ-A8PT-01 4 57829661 57829661 G T NOA1 Silent p.S684S 0.32 TCGA-VQ-A8PT-01 4 62598604 62598604 C T LPHN3 Missense_Mutation p.P176L 0.33 deleterious(0) probably_damaging(1) TCGA-VQ-A8PT-01 4 66242755 66242755 G A EPHA5 Missense_Mutation p.A606V 0.33 tolerated(0.54) benign(0.01) TCGA-VQ-A8PT-01 4 68504823 68504823 G A UBA6 Missense_Mutation p.A525V 0.37 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PT-01 4 7056133 7056133 C T TADA2B Silent p.H205H 0.33 TCGA-VQ-A8PT-01 4 71500135 71500135 C A ENAM Silent p.S107S 0.35 TCGA-VQ-A8PT-01 4 72319255 72319255 T - SLC4A4 Frame_Shift_Del p.F457Lfs*9 0.27 TCGA-VQ-A8PT-01 4 73944538 73944538 C T ANKRD17 Missense_Mutation p.G2410E 0.28 benign(0.007) TCGA-VQ-A8PT-01 4 74279205 74279205 A T ALB Missense_Mutation p.E304D 0.38 tolerated(0.41) benign(0.001) TCGA-VQ-A8PT-01 4 75231008 75231008 C T EREG 5'UTR 0.26 TCGA-VQ-A8PT-01 4 76650027 76650027 G - USO1 Frame_Shift_Del p.G10Vfs*14 0.19 TCGA-VQ-A8PT-01 4 7776640 7776640 A - AFAP1 Intron 0.34 TCGA-VQ-A8PT-01 4 82380569 82380569 A G RASGEF1B Missense_Mutation p.Y32H 0.36 tolerated(0.2) benign(0.001) TCGA-VQ-A8PT-01 4 83825991 83825991 G A THAP9 Silent p.L61L 0.30 TCGA-VQ-A8PT-01 4 85605216 85605216 G A WDFY3 Silent p.I3202I 0.43 TCGA-VQ-A8PT-01 4 8616218 8616218 T C CPZ Missense_Mutation p.V499A 0.33 deleterious(0.02) benign(0.005) TCGA-VQ-A8PT-01 4 956387 956387 G A DGKQ Nonsense_Mutation p.R684* 0.29 TCGA-VQ-A8PT-01 4 96140218 96140218 C T UNC5C Missense_Mutation p.S516N 0.36 tolerated(1) benign(0.001) TCGA-VQ-A8PT-01 4 981708 981708 C T IDUA Silent p.T90T 0.50 TCGA-VQ-A8PT-01 5 100152186 100152186 G T ST8SIA4 Intron 0.40 TCGA-VQ-A8PT-01 5 102489608 102489608 A - PPIP5K2 Frame_Shift_Del p.M398* 0.22 TCGA-VQ-A8PT-01 5 1074698 1074698 G - SLC12A7 Frame_Shift_Del p.H686Tfs*11 0.30 TCGA-VQ-A8PT-01 5 111504442 111504442 A G EPB41L4A Silent p.V642V 0.21 TCGA-VQ-A8PT-01 5 112228273 112228273 A - ZRSR1 Frame_Shift_Del p.M314Wfs*? 0.23 TCGA-VQ-A8PT-01 5 112228688 112228688 G A ZRSR1 Missense_Mutation p.R451Q 0.20 deleterious_low_confidence(0.03) unknown(0) TCGA-VQ-A8PT-01 5 11384895 11384895 G A CTNND2 Silent p.I353I 0.43 TCGA-VQ-A8PT-01 5 118176750 118176750 G T DTWD2 Silent p.S253S 0.29 TCGA-VQ-A8PT-01 5 120022167 120022167 A - PRR16 Frame_Shift_Del p.N205Tfs*35 0.29 TCGA-VQ-A8PT-01 5 127636524 127636524 T - FBN2 Frame_Shift_Del p.S2051Afs*7 0.23 TCGA-VQ-A8PT-01 5 132015485 132015485 G A IL4 Missense_Mutation p.R88H 0.38 tolerated(0.24) benign(0.003) TCGA-VQ-A8PT-01 5 132200034 132200034 C T GDF9 Silent p.A64A 0.39 TCGA-VQ-A8PT-01 5 132270224 132270224 G A AFF4 Missense_Mutation p.S178F 0.36 deleterious(0.03) probably_damaging(0.996) TCGA-VQ-A8PT-01 5 137271534 137271534 A - PKD2L2 Frame_Shift_Del p.K575Sfs*29 0.28 TCGA-VQ-A8PT-01 5 137505021 137505021 G - BRD8 Frame_Shift_Del p.R178Gfs*6 0.29 TCGA-VQ-A8PT-01 5 137733895 137733895 C T KDM3B Missense_Mutation p.R954C 0.29 deleterious(0) probably_damaging(0.961) TCGA-VQ-A8PT-01 5 13814777 13814777 G A DNAH5 Silent p.T2389T 0.47 TCGA-VQ-A8PT-01 5 139216516 139216516 G A PSD2 Silent p.A508A 0.36 TCGA-VQ-A8PT-01 5 139228193 139228193 G A NRG2 Missense_Mutation p.T621M 0.33 deleterious(0) probably_damaging(0.982) TCGA-VQ-A8PT-01 5 139884504 139884504 T C ANKHD1 Missense_Mutation p.S1035P 0.19 unknown(0) TCGA-VQ-A8PT-01 5 139919068 139919068 T - ANKHD1 Intron 0.40 TCGA-VQ-A8PT-01 5 140166388 140166388 G A PCDHA1 Silent p.T171T 0.42 TCGA-VQ-A8PT-01 5 140182889 140182889 G A PCDHA3 Missense_Mutation p.A703T 0.37 deleterious_low_confidence(0) possibly_damaging(0.503) TCGA-VQ-A8PT-01 5 140229434 140229434 G A PCDHA9 Missense_Mutation p.A452T 0.33 deleterious_low_confidence(0.01) benign(0.271) TCGA-VQ-A8PT-01 5 140263777 140263777 G A PCDHA13 Missense_Mutation p.A642T 0.45 tolerated_low_confidence(0.05) benign(0.015) TCGA-VQ-A8PT-01 5 1403164 1403165 - G SLC6A3 Frame_Shift_Ins p.H547Pfs*56 0.36 TCGA-VQ-A8PT-01 5 140530180 140530181 - T PCDHB6 Frame_Shift_Ins p.Q117Sfs*11 0.22 TCGA-VQ-A8PT-01 5 140559520 140559520 C T PCDHB8 Silent p.D635D 0.18 TCGA-VQ-A8PT-01 5 140741590 140741590 C T PCDHGB2 Missense_Mutation p.R630C 0.33 deleterious(0.01) possibly_damaging(0.563) TCGA-VQ-A8PT-01 5 140754749 140754749 G A PCDHGA6 Missense_Mutation p.A367T 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.477) TCGA-VQ-A8PT-01 5 140802891 140802891 C T PCDHGA11 Silent p.A699A 0.34 TCGA-VQ-A8PT-01 5 140807706 140807706 C A PCDHGB6 Intron 0.42 TCGA-VQ-A8PT-01 5 140866555 140866555 G T PCDHGC4 Missense_Mutation p.W605C 0.35 deleterious(0) probably_damaging(0.968) TCGA-VQ-A8PT-01 5 141515374 141515375 - T NDFIP1 Frame_Shift_Ins p.M124Hfs*6 0.30 TCGA-VQ-A8PT-01 5 145464109 145464109 C T PLAC8L1 Silent p.A140A 0.28 TCGA-VQ-A8PT-01 5 145648800 145648800 A - RBM27 Frame_Shift_Del p.R830Dfs*5 0.29 TCGA-VQ-A8PT-01 5 14711209 14711209 A - ANKH 3'UTR 0.36 TCGA-VQ-A8PT-01 5 147902854 147902854 G A HTR4 Missense_Mutation p.R137C 0.46 tolerated(0.14) probably_damaging(0.932) TCGA-VQ-A8PT-01 5 149003655 149003655 C T ARHGEF37 Silent p.R472R 0.30 TCGA-VQ-A8PT-01 5 150867793 150867793 A G SLC36A1 Missense_Mutation p.N470S 0.42 deleterious(0.02) benign(0.259) TCGA-VQ-A8PT-01 5 150911470 150911470 G A FAT2 Silent p.D3163D 0.40 TCGA-VQ-A8PT-01 5 150920312 150920313 - G FAT2 Frame_Shift_Ins p.L2952Pfs*12 0.20 TCGA-VQ-A8PT-01 5 150921891 150921891 C T FAT2 Missense_Mutation p.A2933T 0.35 benign(0.284) TCGA-VQ-A8PT-01 5 156727743 156727743 C A CYFIP2 Missense_Mutation p.F110L 0.25 deleterious(0) benign(0.224) TCGA-VQ-A8PT-01 5 15936965 15936965 C T FBXL7 Silent p.N382N 0.12 TCGA-VQ-A8PT-01 5 169028576 169028576 C T SPDL1 Silent p.P539P 0.23 TCGA-VQ-A8PT-01 5 171179 171179 G A PLEKHG4B Missense_Mutation p.V895M 0.34 deleterious(0) benign(0.411) TCGA-VQ-A8PT-01 5 176011640 176011640 G - CDHR2 Frame_Shift_Del p.G788Vfs*4 0.28 TCGA-VQ-A8PT-01 5 178393140 178393140 G A ZNF454 3'UTR 0.36 TCGA-VQ-A8PT-01 5 178556975 178556975 C T ADAMTS2 Silent p.T805T 0.16 TCGA-VQ-A8PT-01 5 178562959 178562959 C T ADAMTS2 Missense_Mutation p.R679H 0.31 deleterious(0.03) benign(0.066) TCGA-VQ-A8PT-01 5 178987050 178987050 A C RUFY1 Missense_Mutation p.E112A 0.49 deleterious(0) probably_damaging(0.988) TCGA-VQ-A8PT-01 5 179545688 179545688 G A RASGEF1C Missense_Mutation p.T335M 0.34 deleterious(0) possibly_damaging(0.776) TCGA-VQ-A8PT-01 5 180057599 180057599 C T FLT4 Missense_Mutation p.R119H 0.36 tolerated(0.14) benign(0.052) TCGA-VQ-A8PT-01 5 33937023 33937023 G A RXFP3 Missense_Mutation p.A60T 0.38 tolerated(0.06) benign(0.212) TCGA-VQ-A8PT-01 5 36225645 36225645 G A NADK2 Missense_Mutation p.R187W 0.38 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PT-01 5 38451510 38451510 C A EGFLAM Silent p.P887P 0.36 TCGA-VQ-A8PT-01 5 41018484 41018484 C T MROH2B Missense_Mutation p.A908T 0.20 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PT-01 5 42800714 42800714 G A SEPP1 3'UTR 0.27 TCGA-VQ-A8PT-01 5 43161406 43161406 A - ZNF131 Frame_Shift_Del p.R145Gfs*26 0.35 TCGA-VQ-A8PT-01 5 54401381 54401381 A - GZMA Frame_Shift_Del p.T52Pfs*7 0.28 TCGA-VQ-A8PT-01 5 5462728 5462728 T C KIAA0947 Missense_Mutation p.L1094S 0.48 tolerated(0.42) benign(0.01) TCGA-VQ-A8PT-01 5 55472092 55472092 G A ANKRD55 Missense_Mutation p.H67Y 0.41 tolerated(0.44) probably_damaging(0.999) TCGA-VQ-A8PT-01 5 6372636 6372636 C - MED10 Frame_Shift_Del p.E130Rfs*14 0.36 TCGA-VQ-A8PT-01 5 6623348 6623350 GAG - NSUN2 In_Frame_Del p.L172del 0.38 TCGA-VQ-A8PT-01 5 68728863 68728863 G A MARVELD2 Silent p.K482K 0.38 TCGA-VQ-A8PT-01 5 70766232 70766233 - T BDP1 Frame_Shift_Ins p.L313Ffs*9 0.39 TCGA-VQ-A8PT-01 5 71015097 71015097 C A CARTPT 5'UTR 0.24 TCGA-VQ-A8PT-01 5 72470035 72470035 A G TMEM174 3'UTR 0.25 TCGA-VQ-A8PT-01 5 74973758 74973758 T C POC5 Silent p.V475V 0.19 TCGA-VQ-A8PT-01 5 76128514 76128514 G T F2RL1 Splice_Site p.X28_splice 0.32 TCGA-VQ-A8PT-01 5 76645281 76645281 A G PDE8B Missense_Mutation p.H305R 0.34 tolerated(0.2) benign(0.015) TCGA-VQ-A8PT-01 5 7802357 7802357 C T ADCY2 Silent p.C885C 0.29 TCGA-VQ-A8PT-01 5 83476258 83476258 T C EDIL3 Missense_Mutation p.Y103C 0.32 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PT-01 5 92929474 92929474 G A NR2F1 Missense_Mutation p.E400K 0.36 tolerated(0.05) benign(0.211) TCGA-VQ-A8PT-01 5 94818215 94818215 T - TTC37 Frame_Shift_Del p.T1392Qfs*24 0.26 TCGA-VQ-A8PT-01 6 107955809 107955809 C T SOBP Silent p.S587S 0.25 TCGA-VQ-A8PT-01 6 127836160 127836160 G A SOGA3 Silent p.D378D 0.33 TCGA-VQ-A8PT-01 6 127837038 127837038 C - SOGA3 Frame_Shift_Del p.G241Afs*133 0.23 TCGA-VQ-A8PT-01 6 129722369 129722369 A - LAMA2 Frame_Shift_Del p.K1817Rfs*16 0.28 TCGA-VQ-A8PT-01 6 132029990 132029990 G - CTAGE9 Frame_Shift_Del p.P723Hfs*30 0.23 TCGA-VQ-A8PT-01 6 13228254 13228254 A G PHACTR1 Missense_Mutation p.E398G 0.46 tolerated(0.12) possibly_damaging(0.859) TCGA-VQ-A8PT-01 6 132618304 132618304 G T MOXD1 Silent p.T610T 0.40 TCGA-VQ-A8PT-01 6 139234037 139234037 A C REPS1 Silent p.T611T 0.43 TCGA-VQ-A8PT-01 6 143090996 143090996 G A HIVEP2 Missense_Mutation p.T1627M 0.43 deleterious(0.03) probably_damaging(0.996) TCGA-VQ-A8PT-01 6 143091452 143091452 G T HIVEP2 Missense_Mutation p.A1475D 0.43 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PT-01 6 149395082 149395082 G A UST Missense_Mutation p.V351I 0.49 tolerated(0.4) benign(0.172) TCGA-VQ-A8PT-01 6 150164137 150164137 C T LRP11 Missense_Mutation p.A299T 0.31 tolerated(0.61) benign(0.002) TCGA-VQ-A8PT-01 6 151162139 151162139 A G PLEKHG1 3'UTR 0.40 TCGA-VQ-A8PT-01 6 152527387 152527387 G A SYNE1 Silent p.A7645A 0.40 TCGA-VQ-A8PT-01 6 155500553 155500553 C T TIAM2 Silent p.D890D 0.36 TCGA-VQ-A8PT-01 6 158093770 158093770 G T ZDHHC14 Missense_Mutation p.Q361H 0.38 tolerated(0.23) benign(0.006) TCGA-VQ-A8PT-01 6 158296091 158296091 C A SNX9 Silent p.P61P 0.25 TCGA-VQ-A8PT-01 6 158508009 158508010 CC - SYNJ2 Frame_Shift_Del p.P1113Sfs*48 0.47 TCGA-VQ-A8PT-01 6 158834211 158834211 G A TULP4 Missense_Mutation p.D123N 0.29 tolerated(0.16) probably_damaging(0.988) TCGA-VQ-A8PT-01 6 158924999 158924999 C T TULP4 Missense_Mutation p.S1435F 0.32 deleterious_low_confidence(0) possibly_damaging(0.639) TCGA-VQ-A8PT-01 6 159670157 159670157 G A FNDC1 Missense_Mutation p.A1593T 0.40 tolerated(0.93) benign(0.038) TCGA-VQ-A8PT-01 6 160888651 160888651 G A LPAL2 RNA 0.28 TCGA-VQ-A8PT-01 6 165746440 165746440 A C PDE10A 3'UTR 0.47 TCGA-VQ-A8PT-01 6 165749683 165749683 G A PDE10A Silent p.A732A 0.45 TCGA-VQ-A8PT-01 6 165806230 165806230 G A PDE10A Missense_Mutation p.R521W 0.37 deleterious(0) probably_damaging(0.947) TCGA-VQ-A8PT-01 6 167417716 167417716 T - FGFR1OP Intron 0.27 TCGA-VQ-A8PT-01 6 168351988 168351988 A G MLLT4 Silent p.S1311S 0.40 TCGA-VQ-A8PT-01 6 17662285 17662285 T - NUP153 Frame_Shift_Del p.N411Ifs*2 0.28 TCGA-VQ-A8PT-01 6 18222307 18222307 A - KDM1B 3'UTR 0.17 TCGA-VQ-A8PT-01 6 22569741 22569742 - GC HDGFL1 5'Flank 0.30 TCGA-VQ-A8PT-01 6 25538148 25538148 C T LRRC16A Silent p.D711D 0.54 TCGA-VQ-A8PT-01 6 25665213 25665213 C A SCGN Missense_Mutation p.L97I 0.41 tolerated(0.09) benign(0.004) TCGA-VQ-A8PT-01 6 26217676 26217676 A G HIST1H2AE 3'UTR 0.50 TCGA-VQ-A8PT-01 6 26598757 26598757 C T ABT1 Missense_Mutation p.R235C 0.32 deleterious(0) probably_damaging(0.939) TCGA-VQ-A8PT-01 6 2689181 2689181 G A MYLK4 Missense_Mutation p.P82L 0.42 tolerated(0.06) benign(0.013) TCGA-VQ-A8PT-01 6 27861288 27861289 - A HIST1H2BO Frame_Shift_Ins p.A18Sfs*52 0.27 TCGA-VQ-A8PT-01 6 28876612 28876612 T - TRIM27 Frame_Shift_Del p.M298Cfs*11 0.28 TCGA-VQ-A8PT-01 6 29455668 29455668 C - MAS1L Frame_Shift_Del p.I6Ffs*59 0.27 TCGA-VQ-A8PT-01 6 29641359 29641359 A - ZFP57 Frame_Shift_Del p.C177Afs*25 0.26 TCGA-VQ-A8PT-01 6 29760299 29760299 C T HLA-V RNA 0.33 TCGA-VQ-A8PT-01 6 30139991 30139991 C T TRIM15 Silent p.Y421Y 0.39 TCGA-VQ-A8PT-01 6 30708347 30708348 - C FLOT1 Frame_Shift_Ins p.K166Efs*28 0.28 TCGA-VQ-A8PT-01 6 31657478 31657478 C - ABHD16A Frame_Shift_Del p.V321Cfs*22 0.15 TCGA-VQ-A8PT-01 6 31736841 31736841 T C VWA7 Missense_Mutation p.H486R 0.46 deleterious(0.05) benign(0.334) TCGA-VQ-A8PT-01 6 31864817 31864817 G - EHMT2 Intron 0.34 TCGA-VQ-A8PT-01 6 31901672 31901672 C T C2 Silent p.D215D 0.31 TCGA-VQ-A8PT-01 6 31917237 31917237 G A CFB Silent p.V939V 0.30 TCGA-VQ-A8PT-01 6 32006954 32006954 T G CYP21A2 Missense_Mutation p.S126A 0.58 tolerated(0.09) possibly_damaging(0.491) TCGA-VQ-A8PT-01 6 32008309 32008309 C A CYP21A2 Missense_Mutation p.L356M 0.22 deleterious(0.05) probably_damaging(0.974) TCGA-VQ-A8PT-01 6 32036356 32036356 C T TNXB Missense_Mutation p.E2011K 0.37 benign(0.31) TCGA-VQ-A8PT-01 6 32064564 32064564 G A TNXB Missense_Mutation p.R356C 0.53 probably_damaging(0.988) TCGA-VQ-A8PT-01 6 32064964 32064964 G A TNXB Silent p.C222C 0.30 TCGA-VQ-A8PT-01 6 33135266 33135266 C A COL11A2 Silent p.V1267V 0.35 TCGA-VQ-A8PT-01 6 33169206 33169206 C T SLC39A7 Missense_Mutation p.H62Y 0.38 deleterious(0.01) unknown(0) TCGA-VQ-A8PT-01 6 33245602 33245602 G T B3GALT4 Missense_Mutation p.G136W 0.29 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8PT-01 6 33259986 33259986 C T RGL2 Missense_Mutation p.V743I 0.43 tolerated(0.51) benign(0) TCGA-VQ-A8PT-01 6 33263319 33263319 G A RGL2 Missense_Mutation p.A329V 0.33 deleterious(0) probably_damaging(1) TCGA-VQ-A8PT-01 6 33272271 33272271 C - TAPBP Frame_Shift_Del p.G338Afs*65 0.18 TCGA-VQ-A8PT-01 6 33283341 33283341 G A ZBTB22 Silent p.H451H 0.39 TCGA-VQ-A8PT-01 6 33634941 33634941 G - ITPR3 Frame_Shift_Del p.G531Vfs*50 0.20 TCGA-VQ-A8PT-01 6 33647740 33647740 G A ITPR3 Missense_Mutation p.A1352T 0.47 tolerated(0.09) benign(0.042) TCGA-VQ-A8PT-01 6 34505945 34505945 A C SPDEF 3'UTR 0.43 TCGA-VQ-A8PT-01 6 351006 351006 T G DUSP22 3'UTR 0.25 TCGA-VQ-A8PT-01 6 37140814 37140814 G A PIM1 Missense_Mutation p.R217H 0.32 tolerated(0.08) benign(0.106) TCGA-VQ-A8PT-01 6 41121620 41121620 C A TREML1 Silent p.G84G 0.40 TCGA-VQ-A8PT-01 6 41121645 41121645 C T TREML1 Missense_Mutation p.R76H 0.41 deleterious(0.05) benign(0.262) TCGA-VQ-A8PT-01 6 41773425 41773425 G A USP49 Missense_Mutation p.L433F 0.07 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8PT-01 6 42541693 42541693 T C UBR2 Silent p.G100G 0.35 TCGA-VQ-A8PT-01 6 43029061 43029061 C - KLC4 Frame_Shift_Del p.Q16Rfs*36 0.28 TCGA-VQ-A8PT-01 6 43643261 43643261 C T MRPS18A Missense_Mutation p.E116K 0.26 tolerated(0.72) benign(0.142) TCGA-VQ-A8PT-01 6 44081499 44081499 G A MRPL14 3'UTR 0.37 TCGA-VQ-A8PT-01 6 44250253 44250253 C T TCTE1 Missense_Mutation p.R297H 0.48 deleterious(0) probably_damaging(0.991) TCGA-VQ-A8PT-01 6 47678482 47678482 G T GPR115 Nonsense_Mutation p.G54* 0.31 TCGA-VQ-A8PT-01 6 51695726 51695726 A G PKHD1 Silent p.V2745V 0.42 TCGA-VQ-A8PT-01 6 52334208 52334208 A - EFHC1 Frame_Shift_Del p.D408Tfs*7 0.27 TCGA-VQ-A8PT-01 6 52849404 52849404 C A GSTA4 Splice_Site p.X91_splice 0.34 TCGA-VQ-A8PT-01 6 56482976 56482976 C T DST Intron 0.32 TCGA-VQ-A8PT-01 6 56917713 56917713 A - KIAA1586 Frame_Shift_Del p.K140Nfs*15 0.27 TCGA-VQ-A8PT-01 6 70608839 70608839 G T COL19A1 Splice_Site p.X31_splice 0.39 TCGA-VQ-A8PT-01 6 7248881 7248883 GAG - RREB1 In_Frame_Del p.E1638del 0.28 TCGA-VQ-A8PT-01 6 7393447 7393448 - ATG RIOK1 In_Frame_Ins p.D69dup 0.20 TCGA-VQ-A8PT-01 6 7880637 7880637 A - BMP6 3'UTR 0.30 TCGA-VQ-A8PT-01 6 79735281 79735281 C T PHIP Missense_Mutation p.G293D 0.34 deleterious(0) possibly_damaging(0.684) TCGA-VQ-A8PT-01 6 87965019 87965019 C T ZNF292 Nonsense_Mutation p.R558* 0.50 TCGA-VQ-A8PT-01 6 89978929 89978929 G A GABRR2 Missense_Mutation p.R105W 0.37 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8PT-01 6 90392920 90392920 T C MDN1 Silent p.E4011E 0.30 TCGA-VQ-A8PT-01 6 90415853 90415853 A - MDN1 Frame_Shift_Del p.F2691Lfs*7 0.33 TCGA-VQ-A8PT-01 6 90577430 90577430 G A CASP8AP2 RNA 0.32 TCGA-VQ-A8PT-01 6 91226255 91226255 T C MAP3K7 Missense_Mutation p.R596G 0.41 deleterious(0) possibly_damaging(0.786) TCGA-VQ-A8PT-01 6 93967895 93967895 C T EPHA7 Missense_Mutation p.D678N 0.36 deleterious(0) benign(0.056) TCGA-VQ-A8PT-01 6 97561707 97561707 G A KLHL32 Missense_Mutation p.E226K 0.37 tolerated(0.74) benign(0.443) TCGA-VQ-A8PT-01 6 97676827 97676827 C T MMS22L Missense_Mutation p.R661Q 0.35 tolerated(0.24) benign(0.001) TCGA-VQ-A8PT-01 7 100160266 100160268 GGC - AGFG2 In_Frame_Del p.G354del 0.22 TCGA-VQ-A8PT-01 7 100350074 100350074 C T ZAN Silent p.I782I 0.11 TCGA-VQ-A8PT-01 7 100844061 100844061 G A MOGAT3 Silent p.G25G 0.41 TCGA-VQ-A8PT-01 7 106509078 106509078 G A PIK3CG Missense_Mutation p.D358N 0.41 tolerated(1) benign(0) TCGA-VQ-A8PT-01 7 107262485 107262485 C T BCAP29 3'UTR 0.44 TCGA-VQ-A8PT-01 7 107546752 107546752 C T DLD Missense_Mutation p.S208F 0.24 deleterious(0) probably_damaging(0.965) TCGA-VQ-A8PT-01 7 108155728 108155728 G A PNPLA8 Missense_Mutation p.H70Y 0.37 tolerated_low_confidence(0.29) benign(0.002) TCGA-VQ-A8PT-01 7 113522212 113522212 T C PPP1R3A Missense_Mutation p.Y283C 0.36 tolerated(0.05) benign(0.005) TCGA-VQ-A8PT-01 7 114304409 114304409 G A FOXP2 Missense_Mutation p.V666I 0.27 tolerated(0.92) benign(0.017) TCGA-VQ-A8PT-01 7 122261711 122261711 G A CADPS2 Missense_Mutation p.R310W 0.29 deleterious(0.05) probably_damaging(0.918) TCGA-VQ-A8PT-01 7 123182225 123182225 C T NDUFA5 Nonsense_Mutation p.W100* 0.28 TCGA-VQ-A8PT-01 7 123332484 123332485 - T WASL Frame_Shift_Ins p.V422Sfs*31 0.34 TCGA-VQ-A8PT-01 7 128475621 128475621 C T FLNC Silent p.C198C 0.34 TCGA-VQ-A8PT-01 7 129815374 129815374 G A TMEM209 Missense_Mutation p.T441I 0.47 deleterious(0.04) probably_damaging(0.939) TCGA-VQ-A8PT-01 7 135330223 135330224 AG - NUP205 Frame_Shift_Del p.E1898Dfs*34 0.26 TCGA-VQ-A8PT-01 7 138347879 138347879 A - SVOPL Frame_Shift_Del p.F95Lfs*36 0.19 TCGA-VQ-A8PT-01 7 138413516 138413516 C T ATP6V0A4 Missense_Mutation p.R667Q 0.33 tolerated(0.19) benign(0.015) TCGA-VQ-A8PT-01 7 139257921 139257921 C T HIPK2 Missense_Mutation p.V1117M 0.38 tolerated(0.12) benign(0.273) TCGA-VQ-A8PT-01 7 140154934 140154934 C A MKRN1 Missense_Mutation p.E399D 0.38 tolerated(0.23) benign(0.224) TCGA-VQ-A8PT-01 7 143013293 143013293 G - CLCN1 5'UTR 0.34 TCGA-VQ-A8PT-01 7 1477847 1477847 C T MICALL2 Missense_Mutation p.D733N 0.38 tolerated(0.16) benign(0.065) TCGA-VQ-A8PT-01 7 147869508 147869508 G T CNTNAP2 Missense_Mutation p.R983I 0.35 deleterious(0) possibly_damaging(0.649) TCGA-VQ-A8PT-01 7 148487467 148487467 G A CUL1 Silent p.T580T 0.37 TCGA-VQ-A8PT-01 7 148947462 148947462 C T ZNF212 Silent p.C79C 0.43 TCGA-VQ-A8PT-01 7 149128957 149128957 G A ZNF777 Silent p.G802G 0.36 TCGA-VQ-A8PT-01 7 149129362 149129362 G A ZNF777 Silent p.P667P 0.35 TCGA-VQ-A8PT-01 7 149191518 149191518 G A ZNF746 Missense_Mutation p.S34F 0.38 deleterious(0.01) possibly_damaging(0.892) TCGA-VQ-A8PT-01 7 150707211 150707211 C - NOS3 Frame_Shift_Del p.G843Afs*115 0.31 TCGA-VQ-A8PT-01 7 150878502 150878502 G A ASB10 Missense_Mutation p.R210W 0.30 deleterious(0.01) possibly_damaging(0.773) TCGA-VQ-A8PT-01 7 150915675 150915675 T - ABCF2 Frame_Shift_Del p.N400Mfs*2 0.27 TCGA-VQ-A8PT-01 7 150933581 150933581 C - CHPF2 Frame_Shift_Del p.H306Tfs*28 0.27 TCGA-VQ-A8PT-01 7 151046320 151046320 A - NUB1 Frame_Shift_Del p.D120Ifs*17 0.26 TCGA-VQ-A8PT-01 7 1516225 1516225 C T INTS1 Missense_Mutation p.R1711Q 0.28 deleterious(0) possibly_damaging(0.667) TCGA-VQ-A8PT-01 7 151843744 151843744 A T KMT2C Nonsense_Mutation p.Y4657* 0.38 TCGA-VQ-A8PT-01 7 151845524 151845524 A - KMT2C Frame_Shift_Del p.F4496Lfs*21 0.28 TCGA-VQ-A8PT-01 7 1523680 1523680 G A INTS1 Missense_Mutation p.R1130C 0.29 deleterious(0.01) benign(0.009) TCGA-VQ-A8PT-01 7 1529251 1529251 C T INTS1 Missense_Mutation p.A745T 0.27 tolerated(0.34) benign(0.177) TCGA-VQ-A8PT-01 7 154598776 154598776 C T DPP6 Silent p.S540S 0.33 TCGA-VQ-A8PT-01 7 23458411 23458411 G T IGF2BP3 Missense_Mutation p.P90H 0.24 deleterious(0.01) possibly_damaging(0.688) TCGA-VQ-A8PT-01 7 23650899 23650899 T - CCDC126 5'UTR 0.27 TCGA-VQ-A8PT-01 7 24903212 24903212 G A OSBPL3 Missense_Mutation p.A227V 0.40 deleterious(0.05) benign(0.001) TCGA-VQ-A8PT-01 7 26246056 26246056 C T CBX3 Silent p.V31V 0.16 TCGA-VQ-A8PT-01 7 27831636 27831636 T - TAX1BP1 Frame_Shift_Del p.L352* 0.31 TCGA-VQ-A8PT-01 7 30671899 30671899 T C GARS Missense_Mutation p.V647A 0.38 deleterious(0.01) probably_damaging(0.989) TCGA-VQ-A8PT-01 7 37988631 37988631 C T EPDR1 Silent p.D153D 0.23 TCGA-VQ-A8PT-01 7 41729665 41729665 C T INHBA Silent p.S288S 0.45 TCGA-VQ-A8PT-01 7 42005573 42005573 G - GLI3 Frame_Shift_Del p.P1033Rfs*46 0.31 TCGA-VQ-A8PT-01 7 42005681 42005681 G A GLI3 Missense_Mutation p.A997V 0.42 tolerated(0.91) benign(0.003) TCGA-VQ-A8PT-01 7 42187879 42187879 G A GLI3 Missense_Mutation p.R105C 0.33 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-VQ-A8PT-01 7 43360249 43360249 A - HECW1 Frame_Shift_Del p.N124Tfs*43 0.27 TCGA-VQ-A8PT-01 7 44189415 44189415 G A GCK Missense_Mutation p.A209V 0.33 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PT-01 7 45141172 45141172 C T TBRG4 Missense_Mutation p.V537I 0.39 tolerated(0.16) benign(0.005) TCGA-VQ-A8PT-01 7 47331592 47331592 C T TNS3 Missense_Mutation p.A1297T 0.44 tolerated(0.17) benign(0.314) TCGA-VQ-A8PT-01 7 4874410 4874410 T A RADIL Missense_Mutation p.D415V 0.40 deleterious(0) probably_damaging(0.934) TCGA-VQ-A8PT-01 7 55991329 55991329 G A MRPS17 Missense_Mutation p.A69T 0.38 tolerated_low_confidence(0.38) unknown(0) TCGA-VQ-A8PT-01 7 66767745 66767745 T C STAG3L4 RNA 0.35 TCGA-VQ-A8PT-01 7 72409146 72409146 C G POM121 Silent p.G166G 0.22 TCGA-VQ-A8PT-01 7 72413455 72413455 G A POM121 Missense_Mutation p.A710T 0.27 tolerated(0.78) benign(0.004) TCGA-VQ-A8PT-01 7 73008363 73008363 C G MLXIPL Intron 0.53 TCGA-VQ-A8PT-01 7 75959136 75959136 T C YWHAG Missense_Mutation p.T168A 0.38 deleterious_low_confidence(0) possibly_damaging(0.834) TCGA-VQ-A8PT-01 7 77569562 77569562 G A PHTF2 Silent p.V527V 0.36 TCGA-VQ-A8PT-01 7 825191 825191 C A HEATR2 Silent p.L823L 0.41 TCGA-VQ-A8PT-01 7 87053255 87053255 C T ABCB4 Silent p.P726P 0.42 TCGA-VQ-A8PT-01 7 87765308 87765308 C T ADAM22 Silent p.C394C 0.40 TCGA-VQ-A8PT-01 7 88965222 88965222 G A ZNF804B Missense_Mutation p.A976T 0.37 tolerated(0.6) benign(0.021) TCGA-VQ-A8PT-01 7 89749066 89749066 A T RP5-1121E10.2 Intron 0.44 TCGA-VQ-A8PT-01 7 89901159 89901159 C - C7orf63 Frame_Shift_Del p.P250Qfs*40 0.32 TCGA-VQ-A8PT-01 7 91694754 91694755 - A AKAP9 Frame_Shift_Ins p.M2065Nfs*7 0.27 TCGA-VQ-A8PT-01 7 94163073 94163073 A - CASD1 Frame_Shift_Del p.K197Nfs*21 0.26 TCGA-VQ-A8PT-01 7 96318150 96318150 T - SHFM1 3'UTR 0.39 TCGA-VQ-A8PT-01 7 96639275 96639276 - C DLX6 Frame_Shift_Ins p.N269Qfs*59 0.35 TCGA-VQ-A8PT-01 7 98574384 98574384 G A TRRAP Silent p.P2739P 0.35 TCGA-VQ-A8PT-01 7 99303010 99303010 A C CYP3A7 3'UTR 0.58 TCGA-VQ-A8PT-01 7 99773351 99773351 C T GPC2 Silent p.A164A 0.44 TCGA-VQ-A8PT-01 7 99971320 99971320 T C PILRA Missense_Mutation p.L14P 0.28 deleterious(0.02) benign(0.072) TCGA-VQ-A8PT-01 8 100403843 100403843 T C VPS13B Missense_Mutation p.V998A 0.25 tolerated(0.3) benign(0.004) TCGA-VQ-A8PT-01 8 100904153 100904153 C - COX6C Frame_Shift_Del p.V33Lfs*27 0.20 TCGA-VQ-A8PT-01 8 101624305 101624305 T - SNX31 Frame_Shift_Del p.K178Nfs*37 0.20 TCGA-VQ-A8PT-01 8 103289349 103289349 T - UBR5 Frame_Shift_Del p.E2121Kfs*28 0.57 TCGA-VQ-A8PT-01 8 103852041 103852041 T - AZIN1 Frame_Shift_Del p.N38Mfs*12 0.17 TCGA-VQ-A8PT-01 8 10389017 10389017 G A PRSS55 Missense_Mutation p.R187H 0.26 tolerated(1) benign(0.003) TCGA-VQ-A8PT-01 8 10465323 10465323 C A RP1L1 Missense_Mutation p.Q2095H 0.28 unknown(0) TCGA-VQ-A8PT-01 8 104897651 104897651 A G RIMS2 Missense_Mutation p.D275G 0.17 tolerated_low_confidence(0.08) possibly_damaging(0.535) TCGA-VQ-A8PT-01 8 105360959 105360959 C T DCSTAMP Missense_Mutation p.A60V 0.29 tolerated(1) benign(0) TCGA-VQ-A8PT-01 8 105509546 105509546 T C LRP12 Missense_Mutation p.M412V 0.18 tolerated(0.21) benign(0) TCGA-VQ-A8PT-01 8 110424522 110424522 C T PKHD1L1 Missense_Mutation p.A705V 0.25 tolerated(0.44) benign(0.03) TCGA-VQ-A8PT-01 8 110587490 110587490 C A SYBU Missense_Mutation p.R546I 0.29 tolerated(0.13) benign(0.062) TCGA-VQ-A8PT-01 8 11174440 11174440 G A MTMR9 Intron 0.25 TCGA-VQ-A8PT-01 8 11629032 11629032 G - NEIL2 Frame_Shift_Del p.G27Afs*32 0.29 TCGA-VQ-A8PT-01 8 118174009 118174009 G A SLC30A8 Missense_Mutation p.G202D 0.30 tolerated(0.09) benign(0.17) TCGA-VQ-A8PT-01 8 123965046 123965046 G T ZHX2 Missense_Mutation p.K432N 0.20 deleterious(0.02) benign(0.19) TCGA-VQ-A8PT-01 8 124265590 124265590 C T ZHX1 Missense_Mutation p.R866Q 0.32 deleterious_low_confidence(0.03) possibly_damaging(0.806) TCGA-VQ-A8PT-01 8 124340762 124340762 T - ATAD2 Frame_Shift_Del p.K1179Sfs*16 0.20 TCGA-VQ-A8PT-01 8 125029888 125029888 A - FER1L6 Frame_Shift_Del p.K650Sfs*5 0.16 TCGA-VQ-A8PT-01 8 12968281 12968281 A - DLC1 Frame_Shift_Del p.L491Wfs*13 0.24 TCGA-VQ-A8PT-01 8 133146605 133146605 G T KCNQ3 Silent p.P577P 0.20 TCGA-VQ-A8PT-01 8 133492505 133492505 G A KCNQ3 Missense_Mutation p.P92L 0.16 deleterious(0.04) probably_damaging(0.998) TCGA-VQ-A8PT-01 8 133858141 133858141 G T PHF20L1 Missense_Mutation p.Q1009H 0.32 deleterious(0) probably_damaging(0.987) TCGA-VQ-A8PT-01 8 133894174 133894174 C A TG Nonsense_Mutation p.C235* 0.28 TCGA-VQ-A8PT-01 8 133900431 133900431 G A TG Silent p.K793K 0.26 TCGA-VQ-A8PT-01 8 133919079 133919079 C T TG Missense_Mutation p.P1261S 0.28 tolerated(1) benign(0.008) TCGA-VQ-A8PT-01 8 134225202 134225202 C T WISP1 Silent p.C55C 0.22 TCGA-VQ-A8PT-01 8 134472091 134472091 C T ST3GAL1 Silent p.T313T 0.22 TCGA-VQ-A8PT-01 8 141381188 141381188 C T TRAPPC9 Missense_Mutation p.R507H 0.49 deleterious(0.02) probably_damaging(0.993) TCGA-VQ-A8PT-01 8 142151330 142151330 C T DENND3 Missense_Mutation p.T97M 0.25 tolerated(0.17) benign(0.018) TCGA-VQ-A8PT-01 8 143921857 143921857 C A GML Missense_Mutation p.L2I 0.15 tolerated(0.14) unknown(0) TCGA-VQ-A8PT-01 8 143994782 143994782 G A CYP11B2 Missense_Mutation p.A347V 0.28 deleterious(0.04) probably_damaging(0.984) TCGA-VQ-A8PT-01 8 144523140 144523140 C T ZC3H3 Missense_Mutation p.A820T 0.29 tolerated(0.16) benign(0.001) TCGA-VQ-A8PT-01 8 144812352 144812352 G A FAM83H Missense_Mutation p.P134L 0.35 deleterious(0.01) possibly_damaging(0.892) TCGA-VQ-A8PT-01 8 144874769 144874769 C T SCRIB Missense_Mutation p.R1405Q 0.19 benign(0.011) TCGA-VQ-A8PT-01 8 144885851 144885851 C T SCRIB Missense_Mutation p.R1127H 0.30 possibly_damaging(0.493) TCGA-VQ-A8PT-01 8 144896006 144896006 C T SCRIB Missense_Mutation p.S113N 0.18 benign(0.397) TCGA-VQ-A8PT-01 8 144941378 144941378 C - EPPK1 Frame_Shift_Del p.G2015Vfs*36 0.22 TCGA-VQ-A8PT-01 8 144947314 144947314 G - EPPK1 Frame_Shift_Del p.R37Gfs*7 0.29 TCGA-VQ-A8PT-01 8 144993551 144993551 T C PLEC Missense_Mutation p.S3617G 0.34 probably_damaging(0.999) TCGA-VQ-A8PT-01 8 144997024 144997024 G A PLEC Missense_Mutation p.A2495V 0.33 benign(0.115) TCGA-VQ-A8PT-01 8 144999584 144999584 C T PLEC Missense_Mutation p.D1642N 0.50 unknown(0) TCGA-VQ-A8PT-01 8 145139669 145139669 G A GPAA1 Missense_Mutation p.R352H 0.37 deleterious(0) probably_damaging(0.949) TCGA-VQ-A8PT-01 8 145579313 145579313 G T FBXL6 Missense_Mutation p.L500M 0.15 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PT-01 8 145641324 145641324 C T SLC39A4 Missense_Mutation p.R115Q 0.25 tolerated(0.57) benign(0.01) TCGA-VQ-A8PT-01 8 145661194 145661194 G A TONSL Silent p.A874A 0.24 TCGA-VQ-A8PT-01 8 145662420 145662420 G A TONSL Silent p.Y572Y 0.12 TCGA-VQ-A8PT-01 8 146107209 146107209 G A ZNF250 Silent p.H458H 0.30 TCGA-VQ-A8PT-01 8 15621843 15621843 T - TUSC3 3'UTR 0.13 TCGA-VQ-A8PT-01 8 18725322 18725322 C - PSD3 Frame_Shift_Del p.G499Efs*7 0.17 TCGA-VQ-A8PT-01 8 19263296 19263296 T - CSGALNACT1 Frame_Shift_Del p.T532Hfs*43 0.25 TCGA-VQ-A8PT-01 8 2000389 2000389 G A MYOM2 Missense_Mutation p.R74Q 0.28 deleterious(0.03) benign(0.202) TCGA-VQ-A8PT-01 8 21996217 21996217 G A REEP4 Nonsense_Mutation p.R215* 0.19 TCGA-VQ-A8PT-01 8 22079190 22079190 C T PHYHIP Silent p.A223A 0.26 TCGA-VQ-A8PT-01 8 22864068 22864068 A G RHOBTB2 Intron 0.45 TCGA-VQ-A8PT-01 8 26513253 26513253 T C DPYSL2 3'UTR 0.29 TCGA-VQ-A8PT-01 8 27288799 27288799 G T PTK2B Intron 0.44 TCGA-VQ-A8PT-01 8 27373847 27373847 T C EPHX2 Missense_Mutation p.L281P 0.27 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PT-01 8 28217202 28217202 A C ZNF395 Missense_Mutation p.L127R 0.27 tolerated(0.07) possibly_damaging(0.576) TCGA-VQ-A8PT-01 8 2857530 2857530 C A CSMD1 Missense_Mutation p.R2718M 0.05 probably_damaging(0.999) TCGA-VQ-A8PT-01 8 29035040 29035040 C T KIF13B Missense_Mutation p.R259Q 0.30 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8PT-01 8 3047542 3047542 G A CSMD1 Nonsense_Mutation p.R1764* 0.21 TCGA-VQ-A8PT-01 8 33354780 33354780 G T MAK16 Missense_Mutation p.G224C 0.21 tolerated(0.18) possibly_damaging(0.708) TCGA-VQ-A8PT-01 8 3611465 3611465 G A CSMD1 Silent p.N306N 0.17 TCGA-VQ-A8PT-01 8 3611501 3611501 G A CSMD1 Silent p.F294F 0.31 TCGA-VQ-A8PT-01 8 37603034 37603034 A G ERLIN2 Intron 0.19 TCGA-VQ-A8PT-01 8 381399 381399 A - FBXO25 Frame_Shift_Del p.R67Gfs*44 0.18 TCGA-VQ-A8PT-01 8 41522639 41522639 G T ANK1 Intron 0.50 TCGA-VQ-A8PT-01 8 41789806 41789806 A G KAT6A Missense_Mutation p.Y1978H 0.24 unknown(0) TCGA-VQ-A8PT-01 8 42037890 42037890 C T PLAT Silent p.P364P 0.24 TCGA-VQ-A8PT-01 8 42050645 42050645 A C PLAT Missense_Mutation p.V20G 0.25 deleterious_low_confidence(0.04) benign(0.017) TCGA-VQ-A8PT-01 8 49647837 49647837 C T EFCAB1 5'Flank 0.10 TCGA-VQ-A8PT-01 8 51449331 51449331 C T SNTG1 Missense_Mutation p.R215C 0.22 deleterious(0.01) probably_damaging(0.932) TCGA-VQ-A8PT-01 8 53079446 53079446 C T ST18 Silent p.S390S 0.29 TCGA-VQ-A8PT-01 8 53852927 53852927 G A NPBWR1 Missense_Mutation p.A154T 0.24 tolerated(0.22) probably_damaging(0.967) TCGA-VQ-A8PT-01 8 55370983 55370983 C T SOX17 Silent p.N95N 0.35 TCGA-VQ-A8PT-01 8 56436903 56436903 C T XKR4 3'UTR 0.50 TCGA-VQ-A8PT-01 8 59484846 59484846 C T SDCBP Silent p.A71A 0.24 TCGA-VQ-A8PT-01 8 61778024 61778024 A G CHD7 Silent p.K2842K 0.33 TCGA-VQ-A8PT-01 8 6366386 6366386 G A ANGPT2 Intron 0.27 TCGA-VQ-A8PT-01 8 65494206 65494206 C T BHLHE22 Silent p.L287L 0.21 TCGA-VQ-A8PT-01 8 65509358 65509358 A - CYP7B1 Frame_Shift_Del p.F454Lfs*6 0.22 TCGA-VQ-A8PT-01 8 68658316 68658316 G T CPA6 Missense_Mutation p.L17I 0.12 deleterious(0.03) benign(0.053) TCGA-VQ-A8PT-01 8 69445431 69445431 A - C8orf34 Intron 0.36 TCGA-VQ-A8PT-01 8 70585466 70585466 A G SLCO5A1 Missense_Mutation p.Y729H 0.29 deleterious(0) probably_damaging(1) TCGA-VQ-A8PT-01 8 71069128 71069128 C T NCOA2 Missense_Mutation p.R491H 0.27 deleterious(0.03) benign(0.363) TCGA-VQ-A8PT-01 8 74005126 74005126 G T SBSPON Silent p.T59T 0.25 TCGA-VQ-A8PT-01 8 82390985 82390985 A G FABP4 3'UTR 0.40 TCGA-VQ-A8PT-01 8 90937690 90937690 G A OSGIN2 Missense_Mutation p.R527H 0.30 tolerated(0.06) benign(0.002) TCGA-VQ-A8PT-01 8 91029425 91029425 A - DECR1 Frame_Shift_Del p.A50Rfs*26 0.17 TCGA-VQ-A8PT-01 8 93088215 93088215 T - RUNX1T1 Intron 0.20 TCGA-VQ-A8PT-01 8 94821346 94821346 C T TMEM67 Missense_Mutation p.A873V 0.23 tolerated(0.1) benign(0.41) TCGA-VQ-A8PT-01 8 97620562 97620562 G A SDC2 Splice_Site p.X103_splice 0.29 TCGA-VQ-A8PT-01 8 98712011 98712011 A C MTDH Missense_Mutation p.T360P 0.20 tolerated(0.37) possibly_damaging(0.558) TCGA-VQ-A8PT-01 8 99170232 99170232 C T POP1 Silent p.P936P 0.23 TCGA-VQ-A8PT-01 9 100124123 100124123 G A CCDC180 Missense_Mutation p.R1244H 0.36 deleterious(0.05) benign(0.002) TCGA-VQ-A8PT-01 9 101530495 101530495 G T ANKS6 Silent p.A670A 0.28 TCGA-VQ-A8PT-01 9 101552698 101552698 C T ANKS6 Missense_Mutation p.G184S 0.37 tolerated(0.43) benign(0.178) TCGA-VQ-A8PT-01 9 102820108 102820108 G A ERP44 Missense_Mutation p.A55V 0.41 deleterious(0) probably_damaging(0.955) TCGA-VQ-A8PT-01 9 103062934 103062935 - A INVS Frame_Shift_Ins p.N1061Kfs*20 0.20 TCGA-VQ-A8PT-01 9 107298851 107298851 C T OR13C3 Missense_Mutation p.D82N 0.40 deleterious(0.03) probably_damaging(1) TCGA-VQ-A8PT-01 9 109691319 109691319 G A ZNF462 Missense_Mutation p.R1709H 0.34 probably_damaging(0.994) TCGA-VQ-A8PT-01 9 112686021 112686021 G A PALM2-AKAP2 Silent p.E88E 0.27 TCGA-VQ-A8PT-01 9 113139565 113139565 C T SVEP1 Missense_Mutation p.R3497H 0.42 benign(0.052) TCGA-VQ-A8PT-01 9 116171964 116171964 G A POLE3 Missense_Mutation p.A66V 0.48 tolerated(0.22) benign(0.072) TCGA-VQ-A8PT-01 9 116860023 116860023 T C KIF12 Splice_Site 0.31 TCGA-VQ-A8PT-01 9 117666418 117666418 C A TNFSF8 Missense_Mutation p.K166N 0.37 tolerated(0.63) benign(0.004) TCGA-VQ-A8PT-01 9 121929884 121929884 C T BRINP1 Silent p.E588E 0.33 TCGA-VQ-A8PT-01 9 122004380 122004380 C T BRINP1 Missense_Mutation p.R175H 0.20 deleterious(0) probably_damaging(0.991) TCGA-VQ-A8PT-01 9 124535164 124535164 C T DAB2IP Missense_Mutation p.P758L 0.46 tolerated(0.07) benign(0.004) TCGA-VQ-A8PT-01 9 124967005 124967005 G A LHX6 3'UTR 0.55 TCGA-VQ-A8PT-01 9 125140240 125140240 C T PTGS1 Missense_Mutation p.R53C 0.32 deleterious(0.04) benign(0.25) TCGA-VQ-A8PT-01 9 125330169 125330169 A G OR1L8 Silent p.N196N 0.39 TCGA-VQ-A8PT-01 9 128103520 128103520 G A GAPVD1 Missense_Mutation p.R1008H 0.34 deleterious(0.04) probably_damaging(0.998) TCGA-VQ-A8PT-01 9 130253551 130253551 T C LRSAM1 Missense_Mutation p.S494P 0.31 tolerated(0.14) benign(0.126) TCGA-VQ-A8PT-01 9 130476236 130476236 C - PTRH1 3'UTR 0.26 TCGA-VQ-A8PT-01 9 131479201 131479201 C T PKN3 Missense_Mutation p.R662C 0.38 tolerated(0.22) benign(0.006) TCGA-VQ-A8PT-01 9 131568219 131568219 G A TBC1D13 Missense_Mutation p.V334I 0.26 deleterious(0.04) possibly_damaging(0.864) TCGA-VQ-A8PT-01 9 131893820 131893820 C A PPP2R4 Missense_Mutation p.A121D 0.42 tolerated(0.42) benign(0.005) TCGA-VQ-A8PT-01 9 134136098 134136098 C T FAM78A 3'UTR 0.21 TCGA-VQ-A8PT-01 9 136131053 136131053 T C RP11-430N14.4 5'Flank 0.33 TCGA-VQ-A8PT-01 9 137293557 137293557 C A RXRA Silent p.S36S 0.36 TCGA-VQ-A8PT-01 9 138378029 138378029 G A PPP1R26 Missense_Mutation p.C558Y 0.38 tolerated(0.94) benign(0.064) TCGA-VQ-A8PT-01 9 138516282 138516282 G A GLT6D1 Silent p.D164D 0.38 TCGA-VQ-A8PT-01 9 138710460 138710460 C T CAMSAP1 Missense_Mutation p.R1321H 0.36 deleterious(0) probably_damaging(0.961) TCGA-VQ-A8PT-01 9 139008715 139008715 C T C9orf69 Missense_Mutation p.R11H 0.33 deleterious(0.01) possibly_damaging(0.702) TCGA-VQ-A8PT-01 9 139272804 139272804 C T SNAPC4 Missense_Mutation p.A1159T 0.23 tolerated(0.56) benign(0.028) TCGA-VQ-A8PT-01 9 139749499 139749500 - G MAMDC4 Frame_Shift_Ins p.E380Gfs*12 0.23 TCGA-VQ-A8PT-01 9 139754354 139754354 C T MAMDC4 Silent p.P1070P 0.26 TCGA-VQ-A8PT-01 9 139874498 139874498 C A PTGDS Silent p.R144R 0.28 TCGA-VQ-A8PT-01 9 139905132 139905132 C T ABCA2 Silent p.R2038R 0.34 TCGA-VQ-A8PT-01 9 139907228 139907228 C T ABCA2 Missense_Mutation p.D1673N 0.28 tolerated(0.84) benign(0.285) TCGA-VQ-A8PT-01 9 140344419 140344419 G T NSMF Missense_Mutation p.H459N 0.39 deleterious(0.02) benign(0.024) TCGA-VQ-A8PT-01 9 140732961 140732961 C - EHMT1 3'Flank 0.25 TCGA-VQ-A8PT-01 9 17309067 17309067 G A CNTLN Silent p.E386E 0.66 TCGA-VQ-A8PT-01 9 17795815 17795815 T C SH3GL2 3'UTR 0.43 TCGA-VQ-A8PT-01 9 19786464 19786464 G A SLC24A2 Missense_Mutation p.A134V 0.28 tolerated(0.09) benign(0.326) TCGA-VQ-A8PT-01 9 33797977 33797977 C T PRSS3 Silent p.A174A 0.36 TCGA-VQ-A8PT-01 9 35310578 35310578 G A UNC13B Silent p.S292S 0.38 TCGA-VQ-A8PT-01 9 35546591 35546591 C T RUSC2 Missense_Mutation p.P25S 0.40 tolerated(0.3) probably_damaging(0.998) TCGA-VQ-A8PT-01 9 35705802 35705802 T C TLN1 Missense_Mutation p.Y1853C 0.38 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8PT-01 9 35737409 35737409 G T GBA2 Silent p.G847G 0.35 TCGA-VQ-A8PT-01 9 405014 405015 - T DOCK8 Frame_Shift_Ins p.M1114Yfs*4 0.33 TCGA-VQ-A8PT-01 9 4585550 4585550 C T SLC1A1 Nonsense_Mutation p.Q523* 0.27 TCGA-VQ-A8PT-01 9 5549488 5549488 G A PDCD1LG2 Missense_Mutation p.G172D 0.37 tolerated(0.06) possibly_damaging(0.473) TCGA-VQ-A8PT-01 9 70993121 70993121 C T PGM5 Nonsense_Mutation p.R90* 0.05 TCGA-VQ-A8PT-01 9 70993145 70993145 A G PGM5 Missense_Mutation p.I98V 0.09 deleterious(0.01) possibly_damaging(0.573) TCGA-VQ-A8PT-01 9 71831353 71831353 G A TJP2 Silent p.P102P 0.33 TCGA-VQ-A8PT-01 9 74360326 74360326 C T TMEM2 Missense_Mutation p.M214I 0.36 tolerated(0.26) benign(0.002) TCGA-VQ-A8PT-01 9 78794596 78794596 A G PCSK5 Missense_Mutation p.K662R 0.37 tolerated(0.05) probably_damaging(0.961) TCGA-VQ-A8PT-01 9 79253205 79253205 C A PRUNE2 Splice_Site p.X2910_splice 0.31 TCGA-VQ-A8PT-01 9 79843058 79843058 T C VPS13A Silent p.F491F 0.39 TCGA-VQ-A8PT-01 9 86616829 86616829 G A RMI1 Missense_Mutation p.E310K 0.33 tolerated(0.27) possibly_damaging(0.663) TCGA-VQ-A8PT-01 9 87285582 87285582 G T NTRK2 5'UTR 0.36 TCGA-VQ-A8PT-01 9 88631565 88631566 - A NAA35 Frame_Shift_Ins p.T563Nfs*29 0.35 TCGA-VQ-A8PT-01 9 91605866 91605866 G A C9orf47 5'UTR 0.43 TCGA-VQ-A8PT-01 9 91972454 91972454 G T SECISBP2 Missense_Mutation p.G748W 0.33 deleterious(0) probably_damaging(1) TCGA-VQ-A8PT-01 9 95765258 95765258 G A FGD3 Missense_Mutation p.E169K 0.37 deleterious(0) probably_damaging(0.97) TCGA-VQ-A8PT-01 X 100533046 100533046 C T TAF7L Missense_Mutation p.V276I 0.75 tolerated(0.43) benign(0.016) TCGA-VQ-A8PT-01 X 10104688 10104688 A T WWC3 Missense_Mutation p.S927C 0.55 deleterious(0) probably_damaging(0.971) TCGA-VQ-A8PT-01 X 101382373 101382373 T - TCEAL2 Frame_Shift_Del p.L192Cfs*49 0.22 TCGA-VQ-A8PT-01 X 102842138 102842138 T - TCEAL4 Frame_Shift_Del p.L180Cfs*49 0.13 TCGA-VQ-A8PT-01 X 103045503 103045503 A G PLP1 Missense_Mutation p.M271V 0.80 tolerated(0.17) benign(0.082) TCGA-VQ-A8PT-01 X 107400079 107400079 C T COL4A6 3'UTR 0.78 TCGA-VQ-A8PT-01 X 108718971 108718971 C T GUCY2F Silent p.S65S 0.76 TCGA-VQ-A8PT-01 X 115590159 115590159 T - SLC6A14 3'UTR 0.59 TCGA-VQ-A8PT-01 X 129289212 129289212 T C AIFM1 Intron 0.81 TCGA-VQ-A8PT-01 X 130411090 130411090 A G IGSF1 Missense_Mutation p.Y816H 0.82 tolerated(0.09) probably_damaging(0.996) TCGA-VQ-A8PT-01 X 134680317 134680317 T - DDX26B Frame_Shift_Del p.L120* 0.78 TCGA-VQ-A8PT-01 X 136113661 136113661 C T GPR101 Missense_Mutation p.R58H 0.71 deleterious(0.02) probably_damaging(1) TCGA-VQ-A8PT-01 X 13797937 13797937 C T GPM6B Missense_Mutation p.G233S 0.79 deleterious(0.01) probably_damaging(0.971) TCGA-VQ-A8PT-01 X 142717462 142717462 A G SLITRK4 Missense_Mutation p.L488P 0.67 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8PT-01 X 1428338 1428338 G A CSF2RA Missense_Mutation p.R424H 0.34 tolerated(0.17) benign(0.007) TCGA-VQ-A8PT-01 X 144904036 144904036 C T SLITRK2 Silent p.I31I 0.58 TCGA-VQ-A8PT-01 X 144905417 144905417 G - SLITRK2 Frame_Shift_Del p.T494Rfs*3 0.39 TCGA-VQ-A8PT-01 X 146363492 146363492 C T MIR514A2 RNA 0.60 TCGA-VQ-A8PT-01 X 149639325 149639327 CAG - MAMLD1 In_Frame_Del p.Q477del 0.52 TCGA-VQ-A8PT-01 X 149639517 149639517 C T MAMLD1 Missense_Mutation p.P533S 0.74 tolerated(0.23) possibly_damaging(0.625) TCGA-VQ-A8PT-01 X 153043901 153043901 A C PLXNB3 Missense_Mutation p.N1865T 0.68 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8PT-01 X 153070083 153070083 G A PDZD4 Silent p.D345D 0.70 TCGA-VQ-A8PT-01 X 153223615 153223615 C T HCFC1 Missense_Mutation p.R630H 0.56 deleterious(0) probably_damaging(0.992) TCGA-VQ-A8PT-01 X 154159473 154159473 C A F8 Silent p.G864G 0.71 TCGA-VQ-A8PT-01 X 18668643 18668643 G A CDKL5 Missense_Mutation p.G971S 0.67 deleterious_low_confidence(0) possibly_damaging(0.855) TCGA-VQ-A8PT-01 X 19378829 19378829 C T MAP3K15 3'UTR 0.79 TCGA-VQ-A8PT-01 X 2867686 2867686 G A ARSE Silent p.Y171Y 0.79 TCGA-VQ-A8PT-01 X 3228545 3228545 C T MXRA5 Missense_Mutation p.A2567T 0.77 tolerated(0.57) benign(0.005) TCGA-VQ-A8PT-01 X 37587051 37587051 T C XK Missense_Mutation p.V224A 0.74 tolerated(0.46) benign(0.006) TCGA-VQ-A8PT-01 X 39923087 39923087 T - BCOR Frame_Shift_Del p.K1207Nfs*31 0.50 TCGA-VQ-A8PT-01 X 40541987 40541987 C T MED14 Missense_Mutation p.V745I 0.73 tolerated(0.15) benign(0.013) TCGA-VQ-A8PT-01 X 44942744 44942744 T - KDM6A Frame_Shift_Del p.F1109Lfs*11 0.38 TCGA-VQ-A8PT-01 X 47272251 47272251 C T ZNF157 Missense_Mutation p.T260I 0.79 tolerated(0.2) possibly_damaging(0.841) TCGA-VQ-A8PT-01 X 47306679 47306679 A C ZNF41 3'UTR 0.67 TCGA-VQ-A8PT-01 X 64722614 64722614 C A ZC3H12B Missense_Mutation p.P679H 0.78 deleterious(0.02) possibly_damaging(0.56) TCGA-VQ-A8PT-01 X 69478702 69478702 A T P2RY4 Missense_Mutation p.F258Y 0.78 deleterious(0.04) probably_damaging(0.971) TCGA-VQ-A8PT-01 X 70127618 70127618 A - TEX11 5'UTR 0.59 TCGA-VQ-A8PT-01 X 70360599 70360599 G A MED12 Silent p.Q2053Q 0.74 TCGA-VQ-A8PT-01 X 70444212 70444212 C T GJB1 Missense_Mutation p.R219C 0.71 deleterious(0.01) possibly_damaging(0.764) TCGA-VQ-A8PT-01 X 73045705 73045705 C T XIST RNA 0.64 TCGA-VQ-A8PT-01 X 75004754 75004754 G - MAGEE2 Frame_Shift_Del p.Q45Sfs*27 0.50 TCGA-VQ-A8PT-01 X 79286295 79286295 G - TBX22 Frame_Shift_Del p.V418Sfs*68 0.44 TCGA-VQ-A8PT-01 X 84561339 84561339 G C POF1B Missense_Mutation p.Q389E 0.67 deleterious(0.02) benign(0.346) TCGA-VQ-A8PT-01 X 91132836 91132836 G T PCDH11X Nonsense_Mutation p.E533* 0.52 TCGA-VQ-A8PT-01 Y 21878582 21878582 C T KDM5D Missense_Mutation p.C579Y 0.67 deleterious(0) probably_damaging(0.921) TCGA-VQ-A8PT-01 Y 7235472 7235472 A G PRKY Intron 0.90 TCGA-VQ-A8PU-01 10 115423596 115423607 CAGGATAAACCC - NRAP In_Frame_Del p.G12_P15del 0.14 TCGA-VQ-A8PU-01 10 117228823 117228823 G T ATRNL1 Missense_Mutation p.W1213L 0.24 deleterious(0.02) possibly_damaging(0.834) TCGA-VQ-A8PU-01 10 135184226 135184226 C A ECHS1 Missense_Mutation p.G42W 0.53 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PU-01 10 69961716 69961716 C A MYPN Missense_Mutation p.D1208E 0.32 tolerated(0.69) probably_damaging(0.998) TCGA-VQ-A8PU-01 10 70945749 70945749 T G SUPV3L1 Missense_Mutation p.V93G 0.11 deleterious(0) possibly_damaging(0.563) TCGA-VQ-A8PU-01 10 71144155 71144155 G A HK1 Missense_Mutation p.R550H 0.68 tolerated(0.06) possibly_damaging(0.863) TCGA-VQ-A8PU-01 10 90966192 90966192 C G CH25H 3'UTR 0.58 TCGA-VQ-A8PU-01 11 101375485 101375485 A C TRPC6 Missense_Mutation p.L72R 0.66 deleterious_low_confidence(0) possibly_damaging(0.556) TCGA-VQ-A8PU-01 11 33640191 33640191 C T KIAA1549L Missense_Mutation p.R1501C 0.36 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PU-01 11 45948405 45948405 C G GYLTL1B Silent p.A436A 0.18 TCGA-VQ-A8PU-01 11 46760652 46760652 G C F2 Missense_Mutation p.G570A 0.25 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8PU-01 11 5264482 5264482 C T HBG1 3'Flank 0.43 TCGA-VQ-A8PU-01 11 5443973 5443973 C T OR51Q1 Silent p.C181C 0.19 TCGA-VQ-A8PU-01 11 66472844 66472844 C G SPTBN2 Missense_Mutation p.A635P 0.12 deleterious(0.03) possibly_damaging(0.807) TCGA-VQ-A8PU-01 11 67258354 67258354 G C AIP Missense_Mutation p.D295H 0.19 deleterious(0) probably_damaging(0.976) TCGA-VQ-A8PU-01 11 688050 688050 C G DEAF1 Missense_Mutation p.Q175H 0.08 deleterious(0.02) possibly_damaging(0.73) TCGA-VQ-A8PU-01 11 74547104 74547104 G A RNF169 Missense_Mutation p.G486S 0.13 tolerated(1) benign(0.003) TCGA-VQ-A8PU-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.33 deleterious(0) benign(0.361) TCGA-VQ-A8PU-01 12 46246550 46246550 C A ARID2 Silent p.G1548G 0.39 TCGA-VQ-A8PU-01 12 69113396 69113396 C T NUP107 Missense_Mutation p.R405C 0.21 tolerated(0.12) benign(0) TCGA-VQ-A8PU-01 12 69653942 69653942 T C CPSF6 Silent p.H478H 0.41 TCGA-VQ-A8PU-01 13 103515174 103515174 T G BIVM-ERCC5 Missense_Mutation p.S985A 0.40 tolerated_low_confidence(0.09) benign(0.027) TCGA-VQ-A8PU-01 14 106331435 106331435 C T IGHJ2 Missense_Mutation p.R9H 0.18 benign(0.002) TCGA-VQ-A8PU-01 14 21052642 21052642 T C RNASE11 Missense_Mutation p.T49A 0.24 tolerated_low_confidence(0.16) benign(0.398) TCGA-VQ-A8PU-01 14 24113698 24113698 C T DHRS2 Silent p.D207D 0.22 TCGA-VQ-A8PU-01 14 60591724 60591735 GGAATGTTATCA CTAAGGCC PCNXL4 Nonsense_Mutation p.L711Ffs*2 0.26 TCGA-VQ-A8PU-01 14 86088584 86088584 G C FLRT2 Silent p.L242L 0.40 TCGA-VQ-A8PU-01 14 92625331 92625331 G A CPSF2 Missense_Mutation p.R609K 0.42 tolerated(0.87) benign(0.268) TCGA-VQ-A8PU-01 14 94845746 94845746 A C SERPINA1 Intron 0.44 TCGA-VQ-A8PU-01 14 94964690 94964690 G C SERPINA12 Silent p.L15L 0.06 TCGA-VQ-A8PU-01 15 52668628 52668628 C A MYO5A Missense_Mutation p.G779V 0.43 deleterious(0.01) possibly_damaging(0.474) TCGA-VQ-A8PU-01 15 54005028 54005028 T C WDR72 Missense_Mutation p.I218V 0.20 tolerated(0.33) benign(0.13) TCGA-VQ-A8PU-01 15 60770219 60770219 G C NARG2 5'UTR 0.19 TCGA-VQ-A8PU-01 15 76797310 76797310 C A SCAPER Silent p.V948V 0.36 TCGA-VQ-A8PU-01 15 77407520 77407520 C G PEAK1 Missense_Mutation p.D1407H 0.48 deleterious(0.01) possibly_damaging(0.864) TCGA-VQ-A8PU-01 16 1639665 1639665 T A IFT140 Missense_Mutation p.N251Y 0.21 deleterious(0.01) possibly_damaging(0.62) TCGA-VQ-A8PU-01 16 31131791 31131791 C G KAT8 Missense_Mutation p.R140G 0.45 deleterious(0.01) probably_damaging(0.922) TCGA-VQ-A8PU-01 16 67943318 67943318 G A PSKH1 Silent p.E222E 0.30 TCGA-VQ-A8PU-01 16 70177436 70177443 AGTTCTAC - PDPR Frame_Shift_Del p.L545Pfs*5 0.15 TCGA-VQ-A8PU-01 16 80577190 80577190 C T DYNLRB2 Silent p.T7T 0.71 TCGA-VQ-A8PU-01 16 90015915 90015915 G A DEF8 Silent p.A14A 0.53 TCGA-VQ-A8PU-01 17 10360984 10360984 G T MYH4 Silent p.S550S 0.65 TCGA-VQ-A8PU-01 17 10404517 10404529 TCGCTGCAGGTTG - MYH1 Frame_Shift_Del p.D1212Efs*2 0.61 TCGA-VQ-A8PU-01 17 10614187 10614187 T C ADPRM Missense_Mutation p.V252A 0.60 tolerated(0.24) benign(0.241) TCGA-VQ-A8PU-01 17 17929695 17929695 G C ATPAF2 Silent p.T120T 0.49 TCGA-VQ-A8PU-01 17 18167197 18167197 G C MIEF2 Missense_Mutation p.A173P 0.14 tolerated(0.21) possibly_damaging(0.852) TCGA-VQ-A8PU-01 17 43531280 43531280 T G PLEKHM1 Missense_Mutation p.E646D 0.22 tolerated(1) benign(0.001) TCGA-VQ-A8PU-01 17 50149714 50149714 G T CA10 Missense_Mutation p.A34E 0.18 deleterious(0) benign(0.259) TCGA-VQ-A8PU-01 17 60345531 60345531 G T TBC1D3P2 RNA 0.14 TCGA-VQ-A8PU-01 17 62577099 62577099 C G SMURF2 Missense_Mutation p.E194Q 0.47 tolerated(0.17) possibly_damaging(0.612) TCGA-VQ-A8PU-01 17 63957649 63957649 C T CEP112 Missense_Mutation p.A602T 0.46 deleterious(0.04) probably_damaging(0.999) TCGA-VQ-A8PU-01 17 74068520 74068520 C G SRP68 Missense_Mutation p.G18A 0.47 tolerated_low_confidence(0.15) probably_damaging(0.992) TCGA-VQ-A8PU-01 17 74395941 74395941 C T UBE2O Missense_Mutation p.C406Y 0.23 tolerated(0.56) benign(0.188) TCGA-VQ-A8PU-01 17 78444742 78444742 C G NPTX1 Missense_Mutation p.E390D 0.47 tolerated(0.38) possibly_damaging(0.812) TCGA-VQ-A8PU-01 18 43464605 43464605 T C EPG5 Missense_Mutation p.M1761V 0.65 tolerated(1) benign(0) TCGA-VQ-A8PU-01 18 48604699 48604699 A T SMAD4 Missense_Mutation p.K507N 0.58 deleterious(0) probably_damaging(0.939) TCGA-VQ-A8PU-01 19 10822901 10822901 G C QTRT1 Silent p.S237S 0.29 TCGA-VQ-A8PU-01 19 18324218 18324218 A C PDE4C Missense_Mutation p.L523R 0.23 tolerated(0.07) probably_damaging(0.995) TCGA-VQ-A8PU-01 19 1912876 1912876 G A ADAT3 Missense_Mutation p.R277H 0.44 tolerated(0.17) benign(0.027) TCGA-VQ-A8PU-01 19 19653330 19653330 C T CILP2 Missense_Mutation p.R247W 0.40 deleterious(0.02) benign(0.027) TCGA-VQ-A8PU-01 19 30935470 30935470 C G ZNF536 Missense_Mutation p.P334R 0.15 tolerated(0.13) benign(0.209) TCGA-VQ-A8PU-01 19 33334848 33334848 G A SLC7A9 Silent p.Y329Y 0.39 TCGA-VQ-A8PU-01 19 39398142 39398142 T C NFKBIB Missense_Mutation p.M271T 0.55 tolerated(0.78) benign(0.376) TCGA-VQ-A8PU-01 19 40902722 40902722 G C PRX Missense_Mutation p.P513A 0.21 tolerated(0.07) possibly_damaging(0.728) TCGA-VQ-A8PU-01 19 4445517 4445517 G A UBXN6 Missense_Mutation p.S435L 0.22 tolerated(0.17) benign(0.003) TCGA-VQ-A8PU-01 19 49916274 49916274 C T CCDC155 Missense_Mutation p.P440L 0.12 tolerated_low_confidence(0.33) benign(0.002) TCGA-VQ-A8PU-01 19 51274850 51274850 G C GPR32 Missense_Mutation p.L331F 0.27 deleterious(0.01) possibly_damaging(0.566) TCGA-VQ-A8PU-01 19 53117069 53117069 T G ZNF83 Missense_Mutation p.Q250P 0.57 tolerated(0.26) possibly_damaging(0.478) TCGA-VQ-A8PU-01 19 57328380 57328380 T C PEG3 Missense_Mutation p.E477G 0.28 deleterious(0) probably_damaging(1) TCGA-VQ-A8PU-01 19 57328381 57328381 C A PEG3 Nonsense_Mutation p.E477* 0.25 TCGA-VQ-A8PU-01 19 57647373 57647373 G A ZIM3 Missense_Mutation p.T111M 0.23 tolerated(0.09) benign(0.002) TCGA-VQ-A8PU-01 19 6750609 6750626 CCATAGGTCACTGTGTGG - TRIP10 In_Frame_Del p.G487_I492del 0.15 TCGA-VQ-A8PU-01 1 100553778 100553778 C G SASS6 Missense_Mutation p.L563F 0.41 tolerated(0.17) possibly_damaging(0.578) TCGA-VQ-A8PU-01 1 111216464 111216464 A C KCNA3 Missense_Mutation p.F323C 0.38 deleterious(0) probably_damaging(0.994) TCGA-VQ-A8PU-01 1 12921413 12921425 AGTGGGCTGAGCA - PRAMEF2 Frame_Shift_Del p.G403* 0.45 TCGA-VQ-A8PU-01 1 145609300 145609300 G A POLR3C Silent p.L13L 0.07 TCGA-VQ-A8PU-01 1 149884856 149884856 G A SV2A Silent p.D179D 0.44 TCGA-VQ-A8PU-01 1 150667296 150667296 G A GOLPH3L Missense_Mutation p.R7W 0.36 deleterious(0) probably_damaging(0.986) TCGA-VQ-A8PU-01 1 152187614 152187614 G T HRNR Missense_Mutation p.S2164Y 0.07 unknown(0) TCGA-VQ-A8PU-01 1 152732666 152732666 G A KPRP Missense_Mutation p.C201Y 0.33 tolerated(1) benign(0) TCGA-VQ-A8PU-01 1 155292068 155292068 C A RUSC1 Silent p.S168S 0.34 TCGA-VQ-A8PU-01 1 17593246 17593246 C T PADI3 Silent p.G147G 0.32 TCGA-VQ-A8PU-01 1 197061065 197061065 T C ASPM Missense_Mutation p.K3139R 0.36 tolerated(0.29) benign(0.024) TCGA-VQ-A8PU-01 1 201861136 201861136 G A SHISA4 3'UTR 0.50 TCGA-VQ-A8PU-01 1 207648411 207648411 T C CR2 Missense_Mutation p.Y856H 0.08 tolerated(0.27) benign(0.059) TCGA-VQ-A8PU-01 1 222713470 222713470 G A HHIPL2 Silent p.D444D 0.40 TCGA-VQ-A8PU-01 1 247655376 247655376 C T OR2W5 RNA 0.35 TCGA-VQ-A8PU-01 1 41486404 41486404 C T SLFNL1 5'UTR 0.42 TCGA-VQ-A8PU-01 1 46656509 46656509 C T POMGNT1 Intron 0.44 TCGA-VQ-A8PU-01 1 70876958 70876958 T C CTH 5'UTR 0.50 TCGA-VQ-A8PU-01 1 8418667 8418667 G A RERE Nonsense_Mutation p.R1310* 1.00 TCGA-VQ-A8PU-01 20 44698866 44698866 G T NCOA5 Silent p.S116S 0.30 TCGA-VQ-A8PU-01 20 47267558 47267558 G A PREX1 Silent p.F897F 0.10 TCGA-VQ-A8PU-01 20 47886940 47886940 G C ZNFX1 Missense_Mutation p.S470C 0.08 deleterious(0) possibly_damaging(0.738) TCGA-VQ-A8PU-01 20 47888057 47888057 C A ZNFX1 Missense_Mutation p.D98Y 0.18 tolerated_low_confidence(0.18) benign(0) TCGA-VQ-A8PU-01 21 15516992 15516992 G A LIPI Missense_Mutation p.T437I 0.11 deleterious(0.03) benign(0.017) TCGA-VQ-A8PU-01 22 42266950 42266950 A G SREBF2 Missense_Mutation p.T260A 0.70 tolerated(0.47) benign(0.004) TCGA-VQ-A8PU-01 2 128477865 128477865 A T WDR33 Silent p.S578S 0.71 TCGA-VQ-A8PU-01 2 219029215 219029215 G T CXCR1 Silent p.A240A 0.72 TCGA-VQ-A8PU-01 2 227973958 227973958 A T COL4A4 Silent p.P213P 0.29 TCGA-VQ-A8PU-01 2 227973959 227973959 G T COL4A4 Missense_Mutation p.P213H 0.30 probably_damaging(0.997) TCGA-VQ-A8PU-01 2 235950109 235950109 C G SH3BP4 Silent p.V232V 0.72 TCGA-VQ-A8PU-01 2 26507018 26507018 G C HADHB Missense_Mutation p.K365N 0.44 deleterious(0.02) possibly_damaging(0.765) TCGA-VQ-A8PU-01 2 38297883 38297883 G C CYP1B1 Silent p.A538A 0.21 TCGA-VQ-A8PU-01 2 65541057 65541057 C A SPRED2 Missense_Mutation p.D279Y 0.49 deleterious(0) possibly_damaging(0.646) TCGA-VQ-A8PU-01 3 137881146 137881146 G A DBR1 Missense_Mutation p.S407F 0.43 deleterious(0) benign(0.248) TCGA-VQ-A8PU-01 3 140277590 140277590 G C CLSTN2 Missense_Mutation p.W644C 0.26 deleterious(0.01) benign(0.03) TCGA-VQ-A8PU-01 3 160095324 160095324 T C IFT80 Silent p.K88K 0.33 TCGA-VQ-A8PU-01 3 178984570 178984570 C A KCNMB3 5'UTR 0.77 TCGA-VQ-A8PU-01 3 25674270 25674270 C T TOP2B Missense_Mutation p.D343N 0.32 tolerated(0.1) benign(0.023) TCGA-VQ-A8PU-01 3 30713741 30713741 C T TGFBR2 Missense_Mutation p.R381W 0.37 deleterious(0.01) benign(0.262) TCGA-VQ-A8PU-01 3 47049380 47049380 G T NBEAL2 Missense_Mutation p.V2528L 0.25 deleterious(0) benign(0.402) TCGA-VQ-A8PU-01 3 49159436 49159436 G A LAMB2 Nonsense_Mutation p.Q1622* 0.31 TCGA-VQ-A8PU-01 4 41668613 41668613 G A LIMCH1 Silent p.T724T 0.33 TCGA-VQ-A8PU-01 4 46979493 46979493 T A GABRA4 Missense_Mutation p.H143L 0.09 deleterious(0) possibly_damaging(0.72) TCGA-VQ-A8PU-01 4 54967881 54967881 C G GSX2 Missense_Mutation p.A236G 0.45 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8PU-01 4 89668866 89668866 C A FAM13A Missense_Mutation p.K766N 0.44 deleterious(0.02) possibly_damaging(0.48) TCGA-VQ-A8PU-01 5 112389524 112389524 G T MCC Missense_Mutation p.S782R 0.34 deleterious(0) probably_damaging(0.988) TCGA-VQ-A8PU-01 5 139201505 139201505 G C PSD2 Missense_Mutation p.M375I 0.23 tolerated(0.24) benign(0.13) TCGA-VQ-A8PU-01 5 140229284 140229284 A C PCDHA9 Missense_Mutation p.K402Q 0.27 deleterious_low_confidence(0) probably_damaging(1) TCGA-VQ-A8PU-01 5 140554036 140554036 G A PCDHB7 Silent p.A540A 0.22 TCGA-VQ-A8PU-01 5 140810497 140810497 G A PCDHGA12 Silent p.R57R 0.08 TCGA-VQ-A8PU-01 5 140810633 140810633 C A PCDHGA12 Missense_Mutation p.Q103K 0.06 deleterious_low_confidence(0.01) benign(0.012) TCGA-VQ-A8PU-01 5 149585151 149585151 G T SLC6A7 Missense_Mutation p.V556L 0.29 tolerated(0.56) benign(0.009) TCGA-VQ-A8PU-01 5 172359529 172359529 T A ERGIC1 Missense_Mutation p.V211E 0.29 tolerated(0.18) possibly_damaging(0.519) TCGA-VQ-A8PU-01 5 26988462 26988462 G C CDH9 5'UTR 0.27 TCGA-VQ-A8PU-01 5 66396283 66396283 G A MAST4 Silent p.E311E 0.17 TCGA-VQ-A8PU-01 6 109765985 109765985 G T MICAL1 Missense_Mutation p.L1000M 0.41 deleterious(0) probably_damaging(1) TCGA-VQ-A8PU-01 6 139203962 139203962 C G ECT2L Missense_Mutation p.T661S 0.12 tolerated(0.15) benign(0.277) TCGA-VQ-A8PU-01 6 158504506 158504506 C T SYNJ2 Silent p.L971L 0.80 TCGA-VQ-A8PU-01 6 16327726 16327726 G C ATXN1 Silent p.P272P 0.50 TCGA-VQ-A8PU-01 6 30627896 30627896 G T DHX16 Missense_Mutation p.D556E 0.39 deleterious(0.05) unknown(0) TCGA-VQ-A8PU-01 6 30652237 30652237 C T PPP1R18 Missense_Mutation p.R520H 0.35 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PU-01 6 30653100 30653100 C T PPP1R18 Silent p.K232K 0.26 TCGA-VQ-A8PU-01 6 31671005 31671005 C G ABHD16A Silent p.R18R 0.40 TCGA-VQ-A8PU-01 6 32017343 32017343 G T TNXB 5'Flank 0.36 TCGA-VQ-A8PU-01 6 42562009 42562009 T A UBR2 Missense_Mutation p.H166Q 0.59 deleterious(0.02) probably_damaging(0.998) TCGA-VQ-A8PU-01 6 42620275 42620275 C G UBR2 Missense_Mutation p.S887R 0.63 tolerated(0.21) benign(0.118) TCGA-VQ-A8PU-01 6 43639437 43639437 G C MRPS18A 3'UTR 0.83 TCGA-VQ-A8PU-01 6 44310880 44310880 C G SPATS1 Silent p.L16L 0.10 TCGA-VQ-A8PU-01 6 46554813 46554813 C G CYP39A1 Splice_Site p.X417_splice 0.56 TCGA-VQ-A8PU-01 7 100773825 100773825 T A SERPINE1 Missense_Mutation p.F132Y 0.85 tolerated(0.14) probably_damaging(0.96) TCGA-VQ-A8PU-01 7 102575091 102575091 A G LRRC17 Missense_Mutation p.N244S 0.75 tolerated(0.27) benign(0.013) TCGA-VQ-A8PU-01 7 128358912 128358912 C A FAM71F1 Silent p.L154L 0.25 TCGA-VQ-A8PU-01 7 142479987 142479987 C A PRSS3P2 RNA 0.22 TCGA-VQ-A8PU-01 7 149462881 149462881 G A ZNF467 Missense_Mutation p.T237M 0.73 deleterious(0.04) probably_damaging(0.987) TCGA-VQ-A8PU-01 7 32615568 32615568 C A AVL9 Missense_Mutation p.D524E 0.18 tolerated(0.34) benign(0.015) TCGA-VQ-A8PU-01 7 96639137 96639137 T C DLX6 Silent p.S220S 0.83 TCGA-VQ-A8PU-01 8 114449138 114449138 C T CSMD3 5'UTR 0.26 TCGA-VQ-A8PU-01 8 23538800 23538800 C A NKX3-1 Silent p.V213V 0.45 TCGA-VQ-A8PU-01 8 27315869 27315869 G A PTK2B Missense_Mutation p.R958Q 0.27 deleterious(0) possibly_damaging(0.844) TCGA-VQ-A8PU-01 9 107266645 107266645 G T OR13F1 Missense_Mutation p.M34I 0.39 tolerated(0.15) benign(0.009) TCGA-VQ-A8PU-01 9 127790756 127790756 G C SCAI Missense_Mutation p.Q133E 0.24 tolerated(0.2) benign(0.028) TCGA-VQ-A8PU-01 9 130829103 130829103 C G NAIF1 Missense_Mutation p.G93A 0.33 tolerated(0.17) benign(0.014) TCGA-VQ-A8PU-01 9 136210872 136210872 C G MED22 Intron 0.20 TCGA-VQ-A8PU-01 9 138387356 138387356 C T C9orf116 Missense_Mutation p.G110S 0.18 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8PU-01 9 138387436 138387436 T G C9orf116 Missense_Mutation p.K83T 0.21 tolerated(0.1) benign(0.015) TCGA-VQ-A8PU-01 9 139368720 139368720 A C SEC16A Silent p.P1116P 0.68 TCGA-VQ-A8PU-01 9 71628874 71628874 T G PRKACG Missense_Mutation p.E45D 0.24 tolerated(0.73) benign(0.006) TCGA-VQ-A8PU-01 9 80049328 80049328 A G GNA14 Silent p.C140C 0.15 TCGA-VQ-A8PU-01 9 85958159 85958159 G A FRMD3 Missense_Mutation p.R140C 0.20 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8PU-01 X 148055132 148055145 CCTCAGGTGAATAG - AFF2 Splice_Site p.X1134_splice 0.72 TCGA-VQ-A8PU-01 X 48565994 48565994 G A SUV39H1 3'UTR 0.26 TCGA-VQ-A8PX-01 10 100189396 100189397 TC - HPS1 Frame_Shift_Del p.E290Dfs*8 0.13 TCGA-VQ-A8PX-01 10 102300408 102300408 C T HIF1AN Missense_Mutation p.T149M 0.15 tolerated(0.23) benign(0.16) TCGA-VQ-A8PX-01 10 102748415 102748415 G T C10orf2 Missense_Mutation p.D150Y 0.16 deleterious(0.01) benign(0.396) TCGA-VQ-A8PX-01 10 102799308 102799308 G A SFXN3 Missense_Mutation p.S315N 0.04 tolerated(0.52) benign(0.005) TCGA-VQ-A8PX-01 10 105207139 105207139 G A CALHM2 Missense_Mutation p.R248C 0.11 deleterious(0) possibly_damaging(0.857) TCGA-VQ-A8PX-01 10 111879307 111879307 A G ADD3 Silent p.L315L 0.12 TCGA-VQ-A8PX-01 10 118435912 118435912 A G HSPA12A Missense_Mutation p.L463P 0.10 tolerated(0.07) benign(0.112) TCGA-VQ-A8PX-01 10 120354453 120354453 G T PRLHR Missense_Mutation p.L102M 0.15 deleterious(0) probably_damaging(1) TCGA-VQ-A8PX-01 10 121335231 121335231 T C TIAL1 Silent p.V375V 0.22 TCGA-VQ-A8PX-01 10 123781505 123781505 T C TACC2 Silent p.N3N 0.12 TCGA-VQ-A8PX-01 10 125506528 125506528 C T CPXM2 Missense_Mutation p.D675N 0.61 tolerated(0.09) benign(0.139) TCGA-VQ-A8PX-01 10 127461294 127461294 G T MMP21 Silent p.A241A 0.12 TCGA-VQ-A8PX-01 10 12866479 12866479 A G CAMK1D Silent p.T283T 0.10 TCGA-VQ-A8PX-01 10 13169803 13169803 A C OPTN Missense_Mutation p.E434A 0.13 deleterious(0) possibly_damaging(0.566) TCGA-VQ-A8PX-01 10 13672395 13672395 A T PRPF18 3'UTR 0.15 TCGA-VQ-A8PX-01 10 17087116 17087116 T C CUBN Missense_Mutation p.S1188G 0.13 tolerated(0.13) benign(0.012) TCGA-VQ-A8PX-01 10 18840871 18840871 C G NSUN6 Missense_Mutation p.D318H 0.11 deleterious(0) probably_damaging(1) TCGA-VQ-A8PX-01 10 30318033 30318033 C T KIAA1462 Silent p.S348S 0.11 TCGA-VQ-A8PX-01 10 32307473 32307473 C T KIF5B Missense_Mutation p.R775Q 0.16 deleterious(0.04) probably_damaging(0.992) TCGA-VQ-A8PX-01 10 33545316 33545316 A - NRP1 Frame_Shift_Del p.Y248Tfs*6 0.09 TCGA-VQ-A8PX-01 10 34626356 34626356 T C PARD3 Splice_Site p.X806_splice 0.19 TCGA-VQ-A8PX-01 10 50374953 50374953 C T C10orf128 Missense_Mutation p.D67N 0.47 tolerated(0.1) benign(0.003) TCGA-VQ-A8PX-01 10 50701161 50701161 A G ERCC6 Splice_Site p.X607_splice 0.09 TCGA-VQ-A8PX-01 10 50819728 50819728 G A SLC18A3 Silent p.T314T 0.11 TCGA-VQ-A8PX-01 10 61005376 61005376 A G PHYHIPL 3'UTR 0.07 TCGA-VQ-A8PX-01 10 61828425 61828425 C T ANK3 Missense_Mutation p.G4072S 0.11 benign(0.159) TCGA-VQ-A8PX-01 10 70496795 70496795 C T CCAR1 Missense_Mutation p.A79V 0.19 tolerated(0.05) unknown(0) TCGA-VQ-A8PX-01 10 8115999 8115999 T C GATA3 3'UTR 0.14 TCGA-VQ-A8PX-01 10 90492193 90492193 A C LIPK Missense_Mutation p.N185T 0.24 tolerated(0.39) possibly_damaging(0.832) TCGA-VQ-A8PX-01 10 90682146 90682146 A - STAMBPL1 Frame_Shift_Del p.K405Rfs*21 0.53 TCGA-VQ-A8PX-01 10 95107493 95107493 A G MYOF Missense_Mutation p.V1377A 0.06 deleterious(0.01) probably_damaging(0.956) TCGA-VQ-A8PX-01 11 1023628 1023628 G A MUC6 Missense_Mutation p.T1136M 0.23 unknown(0) TCGA-VQ-A8PX-01 11 108788854 108788854 T - DDX10 Intron 0.36 TCGA-VQ-A8PX-01 11 11374285 11374285 A C CSNK2A3 Missense_Mutation p.L128V 0.29 deleterious(0) benign(0.255) TCGA-VQ-A8PX-01 11 117063581 117063581 C A SIDT2 Missense_Mutation p.L702M 0.13 tolerated(0.07) probably_damaging(0.958) TCGA-VQ-A8PX-01 11 118366599 118366599 C T KMT2A Missense_Mutation p.P1850S 0.31 probably_damaging(0.959) TCGA-VQ-A8PX-01 11 118773399 118773399 G A BCL9L Silent p.T351T 0.08 TCGA-VQ-A8PX-01 11 119168129 119168129 C T CBL Missense_Mutation p.T730M 0.25 tolerated_low_confidence(0.72) benign(0.009) TCGA-VQ-A8PX-01 11 119244010 119244010 T C USP2 Missense_Mutation p.T61A 0.13 tolerated_low_confidence(0.66) benign(0.031) TCGA-VQ-A8PX-01 11 120984372 120984372 G A TECTA Nonsense_Mutation p.W245* 0.08 TCGA-VQ-A8PX-01 11 121016554 121016554 G T TECTA Missense_Mutation p.Q1278H 0.11 tolerated(0.18) possibly_damaging(0.553) TCGA-VQ-A8PX-01 11 122774731 122774731 C T C11orf63 Missense_Mutation p.P148L 0.39 tolerated(0.1) benign(0.012) TCGA-VQ-A8PX-01 11 123901005 123901005 C T OR10G8 Missense_Mutation p.R226W 0.30 deleterious(0) probably_damaging(0.954) TCGA-VQ-A8PX-01 11 125514540 125514540 T C CHEK1 Splice_Site p.X411_splice 0.39 TCGA-VQ-A8PX-01 11 126306824 126306824 G A KIRREL3 Silent p.G478G 0.13 TCGA-VQ-A8PX-01 11 126333163 126333163 T C KIRREL3 Missense_Mutation p.T211A 0.15 tolerated(0.45) probably_damaging(0.937) TCGA-VQ-A8PX-01 11 130784223 130784223 T C SNX19 Missense_Mutation p.T538A 0.06 deleterious(0) probably_damaging(0.98) TCGA-VQ-A8PX-01 11 14316078 14316078 T A RRAS2 Missense_Mutation p.D116V 0.28 deleterious(0) probably_damaging(0.955) TCGA-VQ-A8PX-01 11 14491055 14491055 A G COPB1 Missense_Mutation p.S598P 0.05 deleterious(0) probably_damaging(0.964) TCGA-VQ-A8PX-01 11 17793552 17793552 A T KCNC1 Missense_Mutation p.K304M 0.09 deleterious(0) probably_damaging(0.988) TCGA-VQ-A8PX-01 11 1972140 1972140 A G MRPL23 Missense_Mutation p.Y10C 0.09 deleterious(0) probably_damaging(0.95) TCGA-VQ-A8PX-01 11 26677733 26677733 G A ANO3 Missense_Mutation p.G880R 0.16 tolerated(0.21) probably_damaging(0.952) TCGA-VQ-A8PX-01 11 30034239 30034239 G A KCNA4 5'UTR 0.26 TCGA-VQ-A8PX-01 11 3691022 3691022 G A CHRNA10 Intron 0.10 TCGA-VQ-A8PX-01 11 3716707 3716707 C T NUP98 Missense_Mutation p.R1380H 0.07 deleterious(0.01) probably_damaging(0.998) TCGA-VQ-A8PX-01 11 43464895 43464895 A G TTC17 Missense_Mutation p.N758D 0.06 tolerated(0.5) possibly_damaging(0.883) TCGA-VQ-A8PX-01 11 44939593 44939593 A - TSPAN18 Frame_Shift_Del p.N111Ifs*32 0.11 TCGA-VQ-A8PX-01 11 45832610 45832610 C T SLC35C1 Silent p.G273G 0.06 TCGA-VQ-A8PX-01 11 46897164 46897164 A G LRP4 Silent p.Y1256Y 0.15 TCGA-VQ-A8PX-01 11 4790257 4790257 T C OR51F1 Silent p.K297K 0.17 TCGA-VQ-A8PX-01 11 48146561 48146561 G A PTPRJ Missense_Mutation p.A306T 0.09 tolerated(0.45) benign(0.001) TCGA-VQ-A8PX-01 11 4824793 4824794 - G OR52R1 Frame_Shift_Ins p.R273Pfs*9 0.09 TCGA-VQ-A8PX-01 11 4870175 4870175 T C OR51S1 Silent p.T88T 0.13 TCGA-VQ-A8PX-01 11 5510302 5510302 C G OR52D1 Silent p.A122A 0.13 TCGA-VQ-A8PX-01 11 55322787 55322787 C T OR4C15 Silent p.L335L 0.09 TCGA-VQ-A8PX-01 11 55653610 55653610 A - TRIM51 Frame_Shift_Del p.M144Cfs*15 0.26 TCGA-VQ-A8PX-01 11 56230205 56230205 G A OR5M9 Missense_Mutation p.R225C 0.12 deleterious(0.03) benign(0.103) TCGA-VQ-A8PX-01 11 58377413 58377413 C T ZFP91 Missense_Mutation p.R161C 0.24 deleterious_low_confidence(0.02) possibly_damaging(0.828) TCGA-VQ-A8PX-01 11 59382780 59382780 A G OSBP Missense_Mutation p.Y120H 0.21 deleterious(0.01) possibly_damaging(0.899) TCGA-VQ-A8PX-01 11 621170 621170 C T CDHR5 Silent p.R233R 0.10 TCGA-VQ-A8PX-01 11 62445451 62445451 G A UBXN1 Missense_Mutation p.R144C 0.19 deleterious(0) probably_damaging(0.909) TCGA-VQ-A8PX-01 11 6265295 6265295 A G CNGA4 Missense_Mutation p.T462A 0.10 tolerated(0.64) benign(0) TCGA-VQ-A8PX-01 11 62931497 62931497 G A SLC22A25 Silent p.A481A 0.09 TCGA-VQ-A8PX-01 11 65149474 65149474 T C SLC25A45 Intron 0.15 TCGA-VQ-A8PX-01 11 65392948 65392948 G A PCNXL3 Silent p.P1034P 0.15 TCGA-VQ-A8PX-01 11 66062640 66062640 C T TMEM151A Missense_Mutation p.T308M 0.25 deleterious(0.01) benign(0.134) TCGA-VQ-A8PX-01 11 6789985 6789986 GA - OR2AG2 Frame_Shift_Del p.L68Hfs*41 0.10 TCGA-VQ-A8PX-01 11 6790129 6790129 G A OR2AG2 Silent p.D20D 0.06 TCGA-VQ-A8PX-01 11 68704265 68704265 G A IGHMBP2 Missense_Mutation p.G773R 0.14 deleterious(0.03) probably_damaging(0.994) TCGA-VQ-A8PX-01 11 68747899 68747899 A G MRGPRD Missense_Mutation p.I186T 0.12 tolerated(0.08) possibly_damaging(0.562) TCGA-VQ-A8PX-01 11 6898608 6898608 G A OR10A4 Missense_Mutation p.A244T 0.14 deleterious(0) benign(0.009) TCGA-VQ-A8PX-01 11 74415675 74415675 T C CHRDL2 Missense_Mutation p.S203G 0.31 tolerated(1) benign(0) TCGA-VQ-A8PX-01 11 78368952 78368952 A - TENM4 3'UTR 0.38 TCGA-VQ-A8PX-01 11 82698712 82698712 C - RAB30 Frame_Shift_Del p.C93Lfs*15 0.09 TCGA-VQ-A8PX-01 11 85407288 85407288 A G SYTL2 Missense_Mutation p.V1204A 0.13 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8PX-01 11 8752500 8752500 C T ST5 Missense_Mutation p.A113T 0.09 tolerated_low_confidence(0.55) benign(0.001) TCGA-VQ-A8PX-01 11 88059553 88059553 A G CTSC Intron 0.10 TCGA-VQ-A8PX-01 11 89774354 89774354 G A TRIM49C Missense_Mutation p.G332D 0.32 deleterious(0) probably_damaging(0.978) TCGA-VQ-A8PX-01 11 94320396 94320396 G A PIWIL4 Silent p.G299G 0.14 TCGA-VQ-A8PX-01 11 9459633 9459633 T G IPO7 Missense_Mutation p.H832Q 0.15 deleterious(0) possibly_damaging(0.891) TCGA-VQ-A8PX-01 11 9534031 9534031 C T ZNF143 Missense_Mutation p.T471M 0.26 deleterious(0.04) benign(0.008) TCGA-VQ-A8PX-01 11 95713040 95713040 A G MAML2 Missense_Mutation p.L848P 0.10 unknown(0) TCGA-VQ-A8PX-01 12 105322087 105322087 T C SLC41A2 Silent p.V73V 0.22 TCGA-VQ-A8PX-01 12 105551061 105551063 AAG - KIAA1033 In_Frame_Del p.E960del 0.10 TCGA-VQ-A8PX-01 12 109523642 109523644 AGG - USP30 In_Frame_Del p.E488del 0.20 TCGA-VQ-A8PX-01 12 112600181 112600181 C T HECTD4 3'UTR 0.13 TCGA-VQ-A8PX-01 12 113704107 113704107 G A TPCN1 Silent p.L192L 0.16 TCGA-VQ-A8PX-01 12 113826458 113826458 G A PLBD2 3'UTR 0.20 TCGA-VQ-A8PX-01 12 11420777 11420777 G T PRB3 Missense_Mutation p.P136T 0.23 tolerated(0.22) unknown(0) TCGA-VQ-A8PX-01 12 11546704 11546704 G - PRB2 Frame_Shift_Del p.P103Hfs*328 0.10 TCGA-VQ-A8PX-01 12 120146095 120146095 G A CIT Silent p.D1700D 0.15 TCGA-VQ-A8PX-01 12 123187079 123187079 C T HCAR2 Missense_Mutation p.R251Q 0.21 tolerated(0.1) possibly_damaging(0.782) TCGA-VQ-A8PX-01 12 124092030 124092030 G A DDX55 Missense_Mutation p.E100K 0.25 tolerated(0.05) benign(0.407) TCGA-VQ-A8PX-01 12 124856764 124856764 C T NCOR2 Missense_Mutation p.E871K 0.18 benign(0.184) TCGA-VQ-A8PX-01 12 133201562 133201562 C T POLE Missense_Mutation p.G2226R 0.21 tolerated(0.4) benign(0.208) TCGA-VQ-A8PX-01 12 133381415 133381415 T - GOLGA3 Frame_Shift_Del p.N495Mfs*25 0.15 TCGA-VQ-A8PX-01 12 14775051 14775051 A G GUCY2C Missense_Mutation p.I830T 0.23 deleterious(0) probably_damaging(1) TCGA-VQ-A8PX-01 12 14924033 14924033 G A HIST4H4 5'UTR 0.26 TCGA-VQ-A8PX-01 12 21377682 21377682 G - SLCO1B1 Frame_Shift_Del p.A593Lfs*2 0.17 TCGA-VQ-A8PX-01 12 21680093 21680093 A G C12orf39 Missense_Mutation p.T38A 0.20 deleterious(0.02) probably_damaging(0.994) TCGA-VQ-A8PX-01 12 22208169 22208170 - A CMAS Frame_Shift_Ins p.D118Rfs*14 0.12 TCGA-VQ-A8PX-01 12 29607781 29607781 A C OVCH1 Silent p.S841S 0.16 TCGA-VQ-A8PX-01 12 31451103 31451103 A G FAM60A Silent p.S12S 0.12 TCGA-VQ-A8PX-01 12 31605199 31605199 C T DENND5B Missense_Mutation p.G435D 0.06 deleterious(0.01) probably_damaging(0.988) TCGA-VQ-A8PX-01 12 31945150 31945150 C T H3F3C 5'UTR 0.14 TCGA-VQ-A8PX-01 12 32480586 32480586 A G BICD1 Silent p.S399S 0.13 TCGA-VQ-A8PX-01 12 44782029 44782029 A G TMEM117 Silent p.T373T 0.20 TCGA-VQ-A8PX-01 12 44917103 44917103 T A NELL2 Missense_Mutation p.N707Y 0.15 tolerated(0.06) benign(0.167) TCGA-VQ-A8PX-01 12 49218753 49218753 T C CACNB3 Splice_Site p.X164_splice 0.20 TCGA-VQ-A8PX-01 12 49224328 49224328 G A DDX23 Missense_Mutation p.A796V 0.08 tolerated(0.07) benign(0.146) TCGA-VQ-A8PX-01 12 49399605 49399605 G T PRKAG1 Missense_Mutation p.T30N 0.13 tolerated(0.09) benign(0.439) TCGA-VQ-A8PX-01 12 50190676 50190676 G A NCKAP5L Missense_Mutation p.R323C 0.25 tolerated_low_confidence(0.07) benign(0.001) TCGA-VQ-A8PX-01 12 52449867 52449867 T C NR4A1 Silent p.P323P 0.12 TCGA-VQ-A8PX-01 12 52631305 52631305 A G KRT7 Silent p.E183E 0.40 TCGA-VQ-A8PX-01 12 53926958 53926958 G A ATF7 Missense_Mutation p.P216S 0.17 tolerated(0.07) probably_damaging(0.915) TCGA-VQ-A8PX-01 12 54423544 54423544 G A HOXC6 Missense_Mutation p.R169H 0.10 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PX-01 12 55820041 55820041 A - OR6C76 Frame_Shift_Del p.N3Ifs*5 0.17 TCGA-VQ-A8PX-01 12 56092685 56092685 C T ITGA7 Silent p.S273S 0.32 TCGA-VQ-A8PX-01 12 56417501 56417501 A G IKZF4 Missense_Mutation p.Q45R 0.14 tolerated_low_confidence(0.08) benign(0.002) TCGA-VQ-A8PX-01 12 5687670 5687670 A G ANO2 Missense_Mutation p.F750L 0.18 deleterious(0.01) probably_damaging(0.994) TCGA-VQ-A8PX-01 12 57563068 57563068 A G LRP1 Silent p.T1047T 0.08 TCGA-VQ-A8PX-01 12 57867422 57867422 T C ARHGAP9 Missense_Mutation p.H663R 0.17 tolerated(0.23) benign(0.002) TCGA-VQ-A8PX-01 12 59272737 59272737 C T LRIG3 Missense_Mutation p.R651H 0.18 deleterious(0) probably_damaging(1) TCGA-VQ-A8PX-01 12 64875785 64875785 A G TBK1 Missense_Mutation p.I326V 0.15 tolerated(0.29) benign(0.134) TCGA-VQ-A8PX-01 12 66547156 66547156 A - TMBIM4 Frame_Shift_Del p.L57Yfs*16 0.14 TCGA-VQ-A8PX-01 12 68051586 68051586 C T DYRK2 Missense_Mutation p.T300M 0.11 deleterious(0.01) probably_damaging(0.965) TCGA-VQ-A8PX-01 12 71078010 71078010 G A PTPRR Missense_Mutation p.T465M 0.36 deleterious(0) probably_damaging(1) TCGA-VQ-A8PX-01 12 7966965 7966965 C T SLC2A14 Missense_Mutation p.V504I 0.28 tolerated(0.67) benign(0.001) TCGA-VQ-A8PX-01 12 7970577 7970577 C T SLC2A14 Silent p.V398V 0.46 TCGA-VQ-A8PX-01 12 89917740 89917740 A G GALNT4 Missense_Mutation p.V196A 0.22 deleterious(0) probably_damaging(0.914) TCGA-VQ-A8PX-01 12 936421 936421 T C WNK1 Silent p.S382S 0.17 TCGA-VQ-A8PX-01 12 994902 994903 - A WNK1 Frame_Shift_Ins p.A1646Sfs*5 0.08 TCGA-VQ-A8PX-01 13 110830200 110830200 G A COL4A1 Missense_Mutation p.P902L 0.34 possibly_damaging(0.685) TCGA-VQ-A8PX-01 13 111340066 111340066 A G CARS2 Splice_Site p.X191_splice 0.11 TCGA-VQ-A8PX-01 13 23906123 23906123 G T SACS Silent p.L3964L 0.14 TCGA-VQ-A8PX-01 13 27333954 27333954 T C GPR12 Missense_Mutation p.D4G 0.11 tolerated_low_confidence(0.3) benign(0.086) TCGA-VQ-A8PX-01 13 28578208 28578208 G T FLT3 Missense_Mutation p.A988D 0.19 tolerated_low_confidence(0.41) benign(0.001) TCGA-VQ-A8PX-01 13 34409346 34409346 A G RFC3 Missense_Mutation p.I291V 0.10 tolerated(0.13) probably_damaging(0.923) TCGA-VQ-A8PX-01 13 35782891 35782891 T G NBEA Silent p.T1807T 0.50 TCGA-VQ-A8PX-01 13 41905485 41905485 T C NAA16 Missense_Mutation p.L296S 0.09 deleterious(0) probably_damaging(0.929) TCGA-VQ-A8PX-01 13 42789758 42789758 G A DGKH Silent p.A1056A 0.15 TCGA-VQ-A8PX-01 13 51952546 51952546 T - INTS6 Frame_Shift_Del p.V478* 0.17 TCGA-VQ-A8PX-01 13 52603074 52603074 T A UTP14C Missense_Mutation p.L45H 0.18 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PX-01 13 52971621 52971622 - C THSD1 Frame_Shift_Ins p.V256Gfs*36 0.09 TCGA-VQ-A8PX-01 13 52991255 52991255 G A VPS36 Silent p.G309G 0.17 TCGA-VQ-A8PX-01 13 78165597 78165597 T C SCEL Splice_Site p.X231_splice 0.11 TCGA-VQ-A8PX-01 13 78492237 78492237 T C EDNRB Missense_Mutation p.N248D 0.09 tolerated(0.48) benign(0.096) TCGA-VQ-A8PX-01 14 107083536 107083536 A C IGHV4-59 Missense_Mutation p.L23R 0.37 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-VQ-A8PX-01 14 20585647 20585647 A G OR4K17 Missense_Mutation p.R28G 0.25 tolerated_low_confidence(0.11) benign(0) TCGA-VQ-A8PX-01 14 21558707 21558707 C - ZNF219 Frame_Shift_Del p.Q720Kfs*28 0.35 TCGA-VQ-A8PX-01 14 23445714 23445714 T C AJUBA Missense_Mutation p.Q397R 0.07 deleterious(0) benign(0.403) TCGA-VQ-A8PX-01 14 23746270 23746270 G A HOMEZ Missense_Mutation p.T56M 0.43 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PX-01 14 24572811 24572811 C T PCK2 Missense_Mutation p.R521C 0.35 deleterious(0) benign(0.274) TCGA-VQ-A8PX-01 14 24602004 24602004 G A FITM1 Missense_Mutation p.R284H 0.12 tolerated(0.25) benign(0) TCGA-VQ-A8PX-01 14 37149812 37149812 C T SLC25A21 3'UTR 0.20 TCGA-VQ-A8PX-01 14 51477162 51477162 T G TRIM9 Silent p.T364T 0.14 TCGA-VQ-A8PX-01 14 58605515 58605515 C T C14orf37 Missense_Mutation p.D188N 0.15 tolerated(0.18) possibly_damaging(0.728) TCGA-VQ-A8PX-01 14 64905831 64905831 A C MTHFD1 Silent p.R539R 0.12 TCGA-VQ-A8PX-01 14 72152106 72152106 A G SIPA1L1 Silent p.P1044P 0.16 TCGA-VQ-A8PX-01 14 76249851 76249851 T G TTLL5 Silent p.S988S 0.19 TCGA-VQ-A8PX-01 14 78217744 78217744 G A SNW1 Missense_Mutation p.S83L 0.46 deleterious(0) possibly_damaging(0.767) TCGA-VQ-A8PX-01 15 100269781 100269781 G T LYSMD4 Silent p.T147T 0.31 TCGA-VQ-A8PX-01 15 101605773 101605773 C T LRRK1 Missense_Mutation p.P1711S 0.35 tolerated(0.12) probably_damaging(1) TCGA-VQ-A8PX-01 15 102295494 102295494 A C DNM1P47 RNA 0.15 TCGA-VQ-A8PX-01 15 25463872 25463872 A G SNORD115-27 5'Flank 0.22 TCGA-VQ-A8PX-01 15 25969152 25969152 T C ATP10A Missense_Mutation p.I332M 0.12 tolerated(0.2) benign(0.007) TCGA-VQ-A8PX-01 15 29409428 29409428 G A APBA2 3'UTR 0.29 TCGA-VQ-A8PX-01 15 43821324 43821324 T C MAP1A Silent p.T2551T 0.09 TCGA-VQ-A8PX-01 15 45814197 45814197 A G SLC30A4 Missense_Mutation p.V119A 0.34 tolerated(0.48) benign(0.009) TCGA-VQ-A8PX-01 15 49304896 49304896 T - SECISBP2L Frame_Shift_Del p.G561Efs*9 0.17 TCGA-VQ-A8PX-01 15 49907433 49907433 C T FAM227B 5'UTR 0.24 TCGA-VQ-A8PX-01 15 50190341 50190341 T C ATP8B4 Silent p.V799V 0.12 TCGA-VQ-A8PX-01 15 52902004 52902004 C T FAM214A Silent p.E369E 0.13 TCGA-VQ-A8PX-01 15 56756351 56756351 T - MNS1 Frame_Shift_Del p.N33Tfs*50 0.10 TCGA-VQ-A8PX-01 15 63966864 63966864 A G HERC1 Missense_Mutation p.L2508P 0.09 probably_damaging(0.93) TCGA-VQ-A8PX-01 15 64967689 64967689 T - ZNF609 Frame_Shift_Del p.P882Lfs*30 0.17 TCGA-VQ-A8PX-01 15 69560721 69560721 C A GLCE Missense_Mutation p.A331D 0.28 tolerated(0.28) benign(0.004) TCGA-VQ-A8PX-01 15 72172736 72172737 AG - MYO9A Frame_Shift_Del p.S1854Cfs*9 0.19 TCGA-VQ-A8PX-01 15 74277209 74277209 T C STOML1 Missense_Mutation p.D265G 0.16 deleterious(0.02) benign(0.007) TCGA-VQ-A8PX-01 15 79748783 79748783 C T KIAA1024 Silent p.G98G 0.33 TCGA-VQ-A8PX-01 15 81592447 81592447 G A IL16 Missense_Mutation p.R927Q 0.26 tolerated(0.88) benign(0.001) TCGA-VQ-A8PX-01 15 85619985 85619985 C T PDE8A Silent p.S171S 0.27 TCGA-VQ-A8PX-01 15 89402210 89402210 A C ACAN Missense_Mutation p.T2132P 0.10 tolerated(0.2) possibly_damaging(0.885) TCGA-VQ-A8PX-01 15 90892172 90892172 G A GABARAPL3 Silent p.P86P 0.12 TCGA-VQ-A8PX-01 15 91423172 91423172 C - FURIN Frame_Shift_Del p.Q447Sfs*25 0.33 TCGA-VQ-A8PX-01 16 1691188 1691188 G T CRAMP1L Missense_Mutation p.G276V 0.07 deleterious(0) probably_damaging(1) TCGA-VQ-A8PX-01 16 21658752 21658752 A T IGSF6 Silent p.T43T 0.28 TCGA-VQ-A8PX-01 16 2546476 2546476 C T RP11-20I23.1 Silent p.R109R 0.17 TCGA-VQ-A8PX-01 16 2578107 2578107 C T AMDHD2 Silent p.S225S 0.40 TCGA-VQ-A8PX-01 16 28909714 28909714 C - ATP2A1 Frame_Shift_Del p.P571Rfs*21 0.33 TCGA-VQ-A8PX-01 16 30409270 30409270 C T ZNF48 Silent p.S233S 0.31 TCGA-VQ-A8PX-01 16 30767558 30767558 T C PHKG2 Silent p.D204D 0.15 TCGA-VQ-A8PX-01 16 31049929 31049929 C T STX4 Silent p.H221H 0.16 TCGA-VQ-A8PX-01 16 31196405 31196405 C T FUS Silent p.G223G 0.44 TCGA-VQ-A8PX-01 16 31413506 31413506 T C ITGAD Silent p.F166F 0.27 TCGA-VQ-A8PX-01 16 56864483 56864483 A G NUP93 Missense_Mutation p.Y324C 0.21 deleterious(0) probably_damaging(0.984) TCGA-VQ-A8PX-01 16 57505050 57505050 A G POLR2C 3'UTR 0.14 TCGA-VQ-A8PX-01 16 58550136 58550136 G - SETD6 Frame_Shift_Del p.V123Cfs*88 0.24 TCGA-VQ-A8PX-01 16 67679532 67679532 C T RLTPR Silent p.L44L 0.21 TCGA-VQ-A8PX-01 16 68395558 68395558 C T SMPD3 Missense_Mutation p.R605H 0.22 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PX-01 16 68710354 68710354 G A CDH3 Missense_Mutation p.R76Q 0.49 tolerated(0.6) benign(0) TCGA-VQ-A8PX-01 16 68863587 68863587 C A CDH1 Missense_Mutation p.L776M 0.21 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8PX-01 16 70590818 70590818 T G SF3B3 Silent p.A632A 0.45 TCGA-VQ-A8PX-01 16 84075743 84075743 C T SLC38A8 Missense_Mutation p.G7E 0.14 tolerated(1) benign(0) TCGA-VQ-A8PX-01 16 84270497 84270497 G A KCNG4 Missense_Mutation p.R199C 0.37 deleterious(0.05) probably_damaging(0.97) TCGA-VQ-A8PX-01 16 89345559 89345559 T C ANKRD11 Missense_Mutation p.Q2464R 0.19 possibly_damaging(0.672) TCGA-VQ-A8PX-01 16 89345608 89345610 TCT - ANKRD11 In_Frame_Del p.K2447del 0.35 TCGA-VQ-A8PX-01 16 89924902 89924902 T A SPIRE2 Missense_Mutation p.M420K 0.18 tolerated(0.08) probably_damaging(0.999) TCGA-VQ-A8PX-01 16 9857693 9857693 G A GRIN2A Silent p.C1236C 0.07 TCGA-VQ-A8PX-01 17 10307668 10307668 G A MYH8 Silent p.D889D 0.40 TCGA-VQ-A8PX-01 17 1303529 1303529 T C YWHAE 5'UTR 0.27 TCGA-VQ-A8PX-01 17 13503989 13503989 G A HS3ST3A1 Missense_Mutation p.P153L 0.27 deleterious(0) probably_damaging(1) TCGA-VQ-A8PX-01 17 15492256 15492256 G T CDRT1 3'UTR 0.19 TCGA-VQ-A8PX-01 17 21081656 21081656 G T DHRS7B Splice_Site p.X103_splice 0.32 TCGA-VQ-A8PX-01 17 26898344 26898344 A G PIGS Intron 0.38 TCGA-VQ-A8PX-01 17 27278015 27278015 C - PHF12 5'UTR 0.30 TCGA-VQ-A8PX-01 17 3563804 3563804 G - CTNS Intron 0.19 TCGA-VQ-A8PX-01 17 36059174 36059174 G - HNF1B Frame_Shift_Del p.Q521Sfs*70 0.38 TCGA-VQ-A8PX-01 17 37341095 37341095 T C CACNB1 Missense_Mutation p.D224G 0.09 deleterious(0) probably_damaging(0.991) TCGA-VQ-A8PX-01 17 37922646 37922646 A G IKZF3 Silent p.N309N 0.14 TCGA-VQ-A8PX-01 17 38078592 38078592 A G ORMDL3 3'UTR 0.31 TCGA-VQ-A8PX-01 17 38451687 38451687 G A CDC6 Missense_Mutation p.R388H 0.15 deleterious(0) probably_damaging(1) TCGA-VQ-A8PX-01 17 39525917 39525917 T C KRT33B Missense_Mutation p.Y29C 0.15 tolerated(1) benign(0) TCGA-VQ-A8PX-01 17 40837035 40837035 G A CNTNAP1 Silent p.S130S 0.20 TCGA-VQ-A8PX-01 17 40845336 40845336 G A CNTNAP1 Missense_Mutation p.R925H 0.22 deleterious(0.05) probably_damaging(0.936) TCGA-VQ-A8PX-01 17 40950043 40950043 C T COA3 3'UTR 0.34 TCGA-VQ-A8PX-01 17 42882797 42882797 G A GJC1 Missense_Mutation p.T130M 0.22 deleterious(0.03) possibly_damaging(0.454) TCGA-VQ-A8PX-01 17 43246856 43246856 C T HEXIM2 Missense_Mutation p.R181W 0.22 tolerated(0.18) possibly_damaging(0.738) TCGA-VQ-A8PX-01 17 43320574 43320574 C A FMNL1 Silent p.A700A 0.15 TCGA-VQ-A8PX-01 17 55197685 55197686 - C AKAP1 3'UTR 0.11 TCGA-VQ-A8PX-01 17 55950210 55950210 C T CUEDC1 Missense_Mutation p.A200T 0.25 tolerated(0.59) benign(0.001) TCGA-VQ-A8PX-01 17 56387424 56387424 T C BZRAP1 Silent p.E1265E 0.24 TCGA-VQ-A8PX-01 17 56700281 56700281 A C TEX14 Missense_Mutation p.L115R 0.09 deleterious(0.02) possibly_damaging(0.739) TCGA-VQ-A8PX-01 17 61899433 61899433 G A FTSJ3 Silent p.D462D 0.20 TCGA-VQ-A8PX-01 17 649113 649113 C G GEMIN4 Missense_Mutation p.D724H 0.19 deleterious(0) possibly_damaging(0.83) TCGA-VQ-A8PX-01 17 649183 649183 G T GEMIN4 Missense_Mutation p.S700R 0.24 deleterious(0) possibly_damaging(0.844) TCGA-VQ-A8PX-01 17 71166007 71166007 C A SSTR2 Silent p.L183L 0.17 TCGA-VQ-A8PX-01 17 72771769 72771769 A G NAT9 Silent p.H23H 0.29 TCGA-VQ-A8PX-01 17 73625508 73625508 C T RECQL5 Silent p.P665P 0.14 TCGA-VQ-A8PX-01 17 73847735 73847735 C T WBP2 Missense_Mutation p.V28M 0.10 deleterious(0) probably_damaging(0.977) TCGA-VQ-A8PX-01 17 7578274 7578274 T C TP53 Missense_Mutation p.Q192R 0.14 tolerated(0.15) probably_damaging(0.946) TCGA-VQ-A8PX-01 17 7578457 7578457 C T TP53 Missense_Mutation p.R158H 0.46 tolerated(0.1) benign(0.438) TCGA-VQ-A8PX-01 17 7798688 7798688 T A CHD3 Missense_Mutation p.I571N 0.21 benign(0.308) TCGA-VQ-A8PX-01 17 78055516 78055516 C A CCDC40 Silent p.A578A 0.26 TCGA-VQ-A8PX-01 17 7810247 7810247 A C CHD3 Missense_Mutation p.S1581R 0.37 possibly_damaging(0.451) TCGA-VQ-A8PX-01 17 78180836 78180836 C A CARD14 Missense_Mutation p.P920H 0.12 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PX-01 17 78319610 78319610 C T RNF213 Missense_Mutation p.T2492M 0.20 probably_damaging(0.995) TCGA-VQ-A8PX-01 18 12009901 12009901 G A IMPA2 Missense_Mutation p.A84T 0.13 tolerated(0.56) benign(0.001) TCGA-VQ-A8PX-01 18 13645167 13645167 G A LDLRAD4 Silent p.P144P 0.44 TCGA-VQ-A8PX-01 18 21059347 21059347 T G RIOK3 Missense_Mutation p.L471V 0.23 deleterious(0.01) possibly_damaging(0.824) TCGA-VQ-A8PX-01 18 25570188 25570188 C T CDH2 Missense_Mutation p.V491I 0.22 tolerated(0.19) benign(0.006) TCGA-VQ-A8PX-01 18 48591918 48591918 C T SMAD4 Missense_Mutation p.R361C 0.45 deleterious(0) probably_damaging(1) TCGA-VQ-A8PX-01 18 61568996 61568996 T C SERPINB2 Silent p.P186P 0.12 TCGA-VQ-A8PX-01 18 67365805 67365805 C T DOK6 Missense_Mutation p.T192M 0.15 deleterious(0.04) possibly_damaging(0.632) TCGA-VQ-A8PX-01 18 72913755 72913755 T A ZADH2 Silent p.G250G 0.20 TCGA-VQ-A8PX-01 19 10791115 10791115 C T ILF3 Missense_Mutation p.A318V 0.17 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PX-01 19 12876815 12876815 G A HOOK2 Nonsense_Mutation p.Q509* 0.20 TCGA-VQ-A8PX-01 19 12945597 12945597 A G RTBDN Splice_Site p.X26_splice 0.20 TCGA-VQ-A8PX-01 19 13915785 13915785 G A ZSWIM4 Missense_Mutation p.A179T 0.16 deleterious(0.01) benign(0.004) TCGA-VQ-A8PX-01 19 1466153 1466153 T G APC2 Silent p.A951A 0.14 TCGA-VQ-A8PX-01 19 15233984 15233984 A G ILVBL Silent p.A136A 0.08 TCGA-VQ-A8PX-01 19 15648180 15648180 G A CYP4F22 Missense_Mutation p.A126T 0.12 tolerated(0.2) probably_damaging(0.998) TCGA-VQ-A8PX-01 19 1611813 1611814 - T TCF3 Frame_Shift_Ins p.R620Tfs*82 0.13 TCGA-VQ-A8PX-01 19 16620613 16620613 G A C19orf44 Missense_Mutation p.A485T 0.15 tolerated(0.27) benign(0.007) TCGA-VQ-A8PX-01 19 17743633 17743633 G A UNC13A Missense_Mutation p.T1129M 0.17 deleterious(0.04) benign(0.346) TCGA-VQ-A8PX-01 19 18965447 18965447 C T UPF1 Silent p.S398S 0.15 TCGA-VQ-A8PX-01 19 19606952 19606952 G A GATAD2A Missense_Mutation p.G283E 0.17 deleterious(0) probably_damaging(0.992) TCGA-VQ-A8PX-01 19 19655656 19655656 G A CILP2 Missense_Mutation p.A768T 0.16 tolerated(0.72) benign(0.032) TCGA-VQ-A8PX-01 19 21688512 21688512 T C ZNF429 5'UTR 0.33 TCGA-VQ-A8PX-01 19 2222099 2222099 C T DOT1L Silent p.T977T 0.11 TCGA-VQ-A8PX-01 19 2254214 2254214 C T JSRP1 Silent p.T78T 0.09 TCGA-VQ-A8PX-01 19 2425869 2425869 G T TIMM13 3'UTR 0.12 TCGA-VQ-A8PX-01 19 2991904 2991905 - G TLE6 Frame_Shift_Ins p.P439Sfs*103 0.12 TCGA-VQ-A8PX-01 19 30164792 30164792 G A PLEKHF1 Missense_Mutation p.A16T 0.20 tolerated(0.05) possibly_damaging(0.839) TCGA-VQ-A8PX-01 19 34890227 34890227 T C GPI Missense_Mutation p.L473P 0.10 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-VQ-A8PX-01 19 36259099 36259099 T C C19orf55 Silent p.G421G 0.25 TCGA-VQ-A8PX-01 19 36640760 36640760 C - CAPNS1 3'UTR 0.10 TCGA-VQ-A8PX-01 19 37619065 37619065 A G ZNF420 Missense_Mutation p.Y391C 0.16 deleterious(0) probably_damaging(0.97) TCGA-VQ-A8PX-01 19 37853259 37853259 A C HKR1 Missense_Mutation p.S188R 0.09 tolerated(0.6) benign(0.01) TCGA-VQ-A8PX-01 19 38573627 38573627 G A SIPA1L3 Silent p.S474S 0.23 TCGA-VQ-A8PX-01 19 38643485 38643485 C T SIPA1L3 Missense_Mutation p.T1180M 0.29 tolerated(0.06) benign(0.011) TCGA-VQ-A8PX-01 19 39994804 39994804 C - DLL3 Frame_Shift_Del p.T249Rfs*63 0.20 TCGA-VQ-A8PX-01 19 40900083 40900083 C - PRX Frame_Shift_Del p.Q1393Rfs*25 0.22 TCGA-VQ-A8PX-01 19 44681527 44681527 T C ZNF226 Silent p.C704C 0.20 TCGA-VQ-A8PX-01 19 44740637 44740637 A - ZNF227 Frame_Shift_Del p.K686Nfs*16 0.16 TCGA-VQ-A8PX-01 19 44832488 44832488 A G ZNF112 Missense_Mutation p.C614R 0.19 deleterious(0) probably_damaging(1) TCGA-VQ-A8PX-01 19 45911872 45911872 A - CD3EAP Frame_Shift_Del p.N218Ifs*4 0.31 TCGA-VQ-A8PX-01 19 46998141 46998141 G A PNMAL2 Silent p.A194A 0.09 TCGA-VQ-A8PX-01 19 47593427 47593427 G - ZC3H4 Frame_Shift_Del p.P171Hfs*54 0.11 TCGA-VQ-A8PX-01 19 47991592 47991592 G T NAPA Missense_Mutation p.L281M 0.11 deleterious(0) probably_damaging(0.991) TCGA-VQ-A8PX-01 19 49174075 49174075 C T NTN5 Missense_Mutation p.A57T 0.30 tolerated(0.44) benign(0.01) TCGA-VQ-A8PX-01 19 49540004 49540004 G T CGB1 5'UTR 0.13 TCGA-VQ-A8PX-01 19 51506473 51506473 C A KLK9 Missense_Mutation p.G216V 0.20 deleterious(0) probably_damaging(1) TCGA-VQ-A8PX-01 19 5231510 5231510 C T PTPRS Missense_Mutation p.V656I 0.39 tolerated(0.49) possibly_damaging(0.852) TCGA-VQ-A8PX-01 19 54697048 54697048 A G TSEN34 Missense_Mutation p.H255R 0.13 deleterious(0) probably_damaging(1) TCGA-VQ-A8PX-01 19 55221466 55221466 T C AC098784.2 3'Flank 0.11 TCGA-VQ-A8PX-01 19 55607462 55607462 C - PPP1R12C Frame_Shift_Del p.I373Sfs*51 0.20 TCGA-VQ-A8PX-01 19 55756525 55756525 C A PPP6R1 Missense_Mutation p.R194L 0.30 deleterious(0.02) probably_damaging(0.994) TCGA-VQ-A8PX-01 19 6026217 6026218 - T RFX2 Frame_Shift_Ins p.S185Kfs*22 0.27 TCGA-VQ-A8PX-01 19 7083662 7083662 A - ZNF557 Frame_Shift_Del p.K402Nfs*40 0.12 TCGA-VQ-A8PX-01 19 7623949 7623949 T G PNPLA6 Missense_Mutation p.V1214G 0.09 tolerated(0.23) benign(0.196) TCGA-VQ-A8PX-01 19 7706940 7706940 A G STXBP2 Missense_Mutation p.Q200R 0.06 tolerated(0.32) benign(0.015) TCGA-VQ-A8PX-01 19 7987715 7987715 C T SNAPC2 3'UTR 0.12 TCGA-VQ-A8PX-01 19 8322847 8322847 C T CERS4 Nonsense_Mutation p.R276* 0.14 TCGA-VQ-A8PX-01 19 9075389 9075389 G A MUC16 Silent p.D4019D 0.16 TCGA-VQ-A8PX-01 19 9076667 9076667 A G MUC16 Silent p.T3593T 0.06 TCGA-VQ-A8PX-01 1 114242393 114242393 T - PHTF1 Frame_Shift_Del p.K692Sfs*10 0.24 TCGA-VQ-A8PX-01 1 115486969 115486969 T G SYCP1 Missense_Mutation p.L646V 0.14 deleterious(0) possibly_damaging(0.887) TCGA-VQ-A8PX-01 1 11596563 11596563 G A PTCHD2 Silent p.T1333T 0.39 TCGA-VQ-A8PX-01 1 12337922 12337922 T C VPS13D Missense_Mutation p.I1426T 0.13 probably_damaging(0.978) TCGA-VQ-A8PX-01 1 12409412 12409413 - A VPS13D Frame_Shift_Ins p.S3140Kfs*26 0.29 TCGA-VQ-A8PX-01 1 146398292 146398292 G T NBPF12 Splice_Site p.X93_splice 0.05 TCGA-VQ-A8PX-01 1 148252071 148252071 T A NBPF20 Missense_Mutation p.D4557V 0.07 probably_damaging(0.991) TCGA-VQ-A8PX-01 1 151206731 151206731 A G PIP5K1A Missense_Mutation p.Q233R 0.15 deleterious(0.02) benign(0.374) TCGA-VQ-A8PX-01 1 151396430 151396430 A G POGZ Silent p.N506N 0.16 TCGA-VQ-A8PX-01 1 152329479 152329479 T C FLG2 Silent p.Q261Q 0.15 TCGA-VQ-A8PX-01 1 154956147 154956147 G A FLAD1 5'UTR 0.06 TCGA-VQ-A8PX-01 1 155011963 155011963 G T DCST1 Missense_Mutation p.G116V 0.13 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PX-01 1 156011274 156011274 A G UBQLN4 Splice_Site p.X551_splice 0.07 TCGA-VQ-A8PX-01 1 156843623 156843623 A C NTRK1 Missense_Mutation p.Q350P 0.21 tolerated(0.09) probably_damaging(0.957) TCGA-VQ-A8PX-01 1 158576757 158576757 T - OR10Z1 Frame_Shift_Del p.C179Vfs*7 0.10 TCGA-VQ-A8PX-01 1 160143453 160143453 C T ATP1A4 Missense_Mutation p.T646M 0.07 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8PX-01 1 160209806 160209806 G A DCAF8 Missense_Mutation p.A135V 0.18 tolerated(0.13) benign(0.011) TCGA-VQ-A8PX-01 1 16091533 16091533 C - FBLIM1 Frame_Shift_Del p.P20Rfs*11 0.30 TCGA-VQ-A8PX-01 1 160921006 160921006 C T ITLN2 Missense_Mutation p.G90S 0.36 tolerated(0.06) possibly_damaging(0.7) TCGA-VQ-A8PX-01 1 161140288 161140288 C - PPOX Frame_Shift_Del p.P361Lfs*5 0.08 TCGA-VQ-A8PX-01 1 161160941 161160941 G A ADAMTS4 Missense_Mutation p.A834V 0.14 tolerated_low_confidence(0.52) benign(0.001) TCGA-VQ-A8PX-01 1 162345150 162345150 A C C1orf111 Silent p.A49A 0.14 TCGA-VQ-A8PX-01 1 162569091 162569091 T C UAP1 Missense_Mutation p.F486L 0.12 tolerated(0.22) probably_damaging(0.999) TCGA-VQ-A8PX-01 1 166905872 166905872 A G ILDR2 Missense_Mutation p.V220A 0.13 deleterious(0) benign(0.43) TCGA-VQ-A8PX-01 1 173486730 173486730 G T SLC9C2 Missense_Mutation p.S951R 0.17 deleterious(0.01) possibly_damaging(0.815) TCGA-VQ-A8PX-01 1 1735942 1735942 C A GNB1 Missense_Mutation p.G116C 0.17 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PX-01 1 176738873 176738873 T C PAPPA2 Missense_Mutation p.F1485S 0.28 deleterious(0) possibly_damaging(0.839) TCGA-VQ-A8PX-01 1 179834130 179834132 CTT - IFRG15 In_Frame_Del p.R60del 0.08 TCGA-VQ-A8PX-01 1 182555660 182555660 C T RNASEL Silent p.T94T 0.17 TCGA-VQ-A8PX-01 1 186303547 186303547 G A TPR Missense_Mutation p.R1698C 0.24 possibly_damaging(0.689) TCGA-VQ-A8PX-01 1 18703338 18703338 G T IGSF21 Silent p.G382G 0.50 TCGA-VQ-A8PX-01 1 19652853 19652853 C T PQLC2 Missense_Mutation p.A166V 0.50 tolerated(0.28) benign(0.001) TCGA-VQ-A8PX-01 1 21268271 21268271 G A EIF4G3 Missense_Mutation p.P409L 0.13 deleterious_low_confidence(0.02) benign(0.06) TCGA-VQ-A8PX-01 1 213146174 213146174 G A VASH2 Silent p.L206L 0.13 TCGA-VQ-A8PX-01 1 220145463 220145464 AT - EPRS Frame_Shift_Del p.M1424Gfs*4 0.12 TCGA-VQ-A8PX-01 1 226019616 226019616 T C EPHX1 Missense_Mutation p.V107A 0.11 tolerated(0.22) possibly_damaging(0.796) TCGA-VQ-A8PX-01 1 235316070 235316070 G A RBM34 Missense_Mutation p.S203L 0.12 deleterious(0) probably_damaging(0.96) TCGA-VQ-A8PX-01 1 235952081 235952081 A G LYST Silent p.C1536C 0.42 TCGA-VQ-A8PX-01 1 237016359 237016359 G A MTR Missense_Mutation p.A642T 0.10 deleterious(0.01) benign(0.031) TCGA-VQ-A8PX-01 1 23707915 23707915 T C TCEA3 3'UTR 0.24 TCGA-VQ-A8PX-01 1 237580390 237580390 G A RYR2 Missense_Mutation p.R272H 0.16 probably_damaging(0.999) TCGA-VQ-A8PX-01 1 244572822 244572822 A G ADSS 3'UTR 0.12 TCGA-VQ-A8PX-01 1 247587452 247587452 C T NLRP3 Missense_Mutation p.A236V 0.07 deleterious(0) probably_damaging(0.988) TCGA-VQ-A8PX-01 1 27101117 27101117 C - ARID1A Frame_Shift_Del p.P1468Lfs*13 0.11 TCGA-VQ-A8PX-01 1 27121132 27121132 C T PIGV Missense_Mutation p.R203C 0.42 deleterious(0) probably_damaging(1) TCGA-VQ-A8PX-01 1 29189457 29189457 C T OPRD1 Missense_Mutation p.R261C 0.43 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PX-01 1 29618455 29618455 G A PTPRU Missense_Mutation p.R808H 0.15 tolerated(0.12) benign(0.002) TCGA-VQ-A8PX-01 1 31454190 31454190 A G PUM1 Silent p.Y407Y 0.14 TCGA-VQ-A8PX-01 1 32673468 32673468 G A IQCC Missense_Mutation p.D476N 0.20 tolerated(0.15) possibly_damaging(0.572) TCGA-VQ-A8PX-01 1 33957226 33957226 T C ZSCAN20 Silent p.G456G 0.11 TCGA-VQ-A8PX-01 1 34192261 34192261 C T CSMD2 Silent p.S758S 0.38 TCGA-VQ-A8PX-01 1 35653673 35653673 A G SFPQ Silent p.R572R 0.13 TCGA-VQ-A8PX-01 1 36181473 36181473 A G C1orf216 Silent p.A150A 0.14 TCGA-VQ-A8PX-01 1 3644706 3644706 C - TP73 Frame_Shift_Del p.P335Lfs*10 0.11 TCGA-VQ-A8PX-01 1 37975095 37975095 A G MEAF6 Silent p.A85A 0.11 TCGA-VQ-A8PX-01 1 39801886 39801886 A G MACF1 Intron 0.20 TCGA-VQ-A8PX-01 1 40030186 40030186 G A PABPC4 Silent p.R454R 0.18 TCGA-VQ-A8PX-01 1 40131310 40131310 C T NT5C1A Missense_Mutation p.V106M 0.08 deleterious(0) probably_damaging(0.975) TCGA-VQ-A8PX-01 1 40529955 40529955 C A CAP1 Silent p.T117T 0.17 TCGA-VQ-A8PX-01 1 47078989 47078989 G A MOB3C Missense_Mutation p.A54V 0.20 deleterious(0.01) benign(0.391) TCGA-VQ-A8PX-01 1 48865188 48865189 - T SPATA6 Frame_Shift_Ins p.N205Kfs*24 0.17 TCGA-VQ-A8PX-01 1 52498677 52498677 C T KTI12 Missense_Mutation p.A253T 0.13 tolerated(0.06) benign(0.403) TCGA-VQ-A8PX-01 1 53553773 53553773 C T SLC1A7 Missense_Mutation p.V531I 0.11 tolerated_low_confidence(0.9) benign(0) TCGA-VQ-A8PX-01 1 53684145 53684145 C - C1orf123 Frame_Shift_Del p.G57Afs*23 0.20 TCGA-VQ-A8PX-01 1 54298238 54298238 A G NDC1 Missense_Mutation p.Y69H 0.24 tolerated(0.35) benign(0.014) TCGA-VQ-A8PX-01 1 57169718 57169718 T C PRKAA2 Missense_Mutation p.I288T 0.22 deleterious(0) benign(0.097) TCGA-VQ-A8PX-01 1 59165667 59165667 C - MYSM1 Frame_Shift_Del p.A20Hfs*78 0.23 TCGA-VQ-A8PX-01 1 62740039 62740039 G T KANK4 Missense_Mutation p.P246H 0.14 deleterious(0.03) benign(0.11) TCGA-VQ-A8PX-01 1 63919597 63919597 G T ITGB3BP Missense_Mutation p.P198H 0.17 deleterious(0.01) benign(0.143) TCGA-VQ-A8PX-01 1 65690479 65690479 T C AK4 Silent p.D161D 0.15 TCGA-VQ-A8PX-01 1 66798089 66798089 G A PDE4B Intron 0.20 TCGA-VQ-A8PX-01 1 79095521 79095521 A T IFI44L Missense_Mutation p.N215I 0.09 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8PX-01 1 82432234 82432235 AA - LPHN2 Frame_Shift_Del p.K747Rfs*9 0.34 TCGA-VQ-A8PX-01 1 93599280 93599280 A - MTF2 Frame_Shift_Del p.G397Efs*6 0.35 TCGA-VQ-A8PX-01 1 94048278 94048278 C T BCAR3 Nonsense_Mutation p.W422* 0.07 TCGA-VQ-A8PX-01 1 95357932 95357932 T - SLC44A3 Frame_Shift_Del p.F574Lfs*4 0.14 TCGA-VQ-A8PX-01 20 1352668 1352668 A C FKBP1A Intron 0.17 TCGA-VQ-A8PX-01 20 17446101 17446101 G A PCSK2 Missense_Mutation p.G445R 0.08 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PX-01 20 20055897 20055897 C A C20orf26 Missense_Mutation p.L146I 0.11 tolerated(0.09) benign(0.031) TCGA-VQ-A8PX-01 20 21369964 21369964 C T XRN2 Silent p.Y947Y 0.22 TCGA-VQ-A8PX-01 20 23420920 23420920 T C CSTL1 Missense_Mutation p.W6R 0.11 deleterious_low_confidence(0.04) benign(0.01) TCGA-VQ-A8PX-01 20 2582925 2582925 T A TMC2 Missense_Mutation p.V464D 0.16 tolerated(0.06) benign(0.323) TCGA-VQ-A8PX-01 20 2591073 2591073 C T TMC2 Silent p.I474I 0.12 TCGA-VQ-A8PX-01 20 279422 279422 A G ZCCHC3 Missense_Mutation p.T399A 0.12 tolerated_low_confidence(0.08) benign(0.003) TCGA-VQ-A8PX-01 20 30729360 30729362 AGA - TM9SF4 In_Frame_Del p.K99del 0.19 TCGA-VQ-A8PX-01 20 31015953 31015953 G A ASXL1 Missense_Mutation p.R92H 0.39 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PX-01 20 3146431 3146431 G A LZTS3 Silent p.S345S 0.42 TCGA-VQ-A8PX-01 20 3214918 3214918 G A SLC4A11 Missense_Mutation p.R155C 0.29 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PX-01 20 33502205 33502206 - C ACSS2 Frame_Shift_Ins p.I270Nfs*2 0.41 TCGA-VQ-A8PX-01 20 37580943 37580943 C - FAM83D Frame_Shift_Del p.H545Tfs*6 0.12 TCGA-VQ-A8PX-01 20 40102144 40102144 G A CHD6 Nonsense_Mutation p.R828* 0.27 TCGA-VQ-A8PX-01 20 44574436 44574436 G A PCIF1 Missense_Mutation p.V419M 0.16 deleterious(0) possibly_damaging(0.542) TCGA-VQ-A8PX-01 20 46264348 46264348 C - NCOA3 Frame_Shift_Del p.P467Hfs*15 0.22 TCGA-VQ-A8PX-01 20 50418955 50418955 G A SALL4 5'UTR 0.17 TCGA-VQ-A8PX-01 20 50701669 50701669 C A ZFP64 Silent p.A455A 0.19 TCGA-VQ-A8PX-01 20 50769864 50769864 G A ZFP64 Silent p.C289C 0.27 TCGA-VQ-A8PX-01 20 51870283 51870283 A G TSHZ2 Missense_Mutation p.K96E 0.09 tolerated(0.69) possibly_damaging(0.459) TCGA-VQ-A8PX-01 20 55982818 55982818 C A RBM38 Silent p.P212P 0.13 TCGA-VQ-A8PX-01 20 56190571 56190571 G A ZBP1 Missense_Mutation p.R109W 0.12 deleterious(0.02) probably_damaging(0.993) TCGA-VQ-A8PX-01 20 61982084 61982084 C T CHRNA4 Missense_Mutation p.A227T 0.25 tolerated(0.53) probably_damaging(0.999) TCGA-VQ-A8PX-01 20 62046303 62046303 C T KCNQ2 Missense_Mutation p.R493H 0.27 deleterious(0.02) probably_damaging(0.953) TCGA-VQ-A8PX-01 21 11026772 11026772 C T BAGE2 RNA 0.14 TCGA-VQ-A8PX-01 21 16339653 16339653 C T NRIP1 Silent p.T287T 0.14 TCGA-VQ-A8PX-01 21 19715958 19715958 A G TMPRSS15 Silent p.G431G 0.17 TCGA-VQ-A8PX-01 21 41151166 41151166 T C IGSF5 Missense_Mutation p.C290R 0.21 tolerated(0.87) benign(0) TCGA-VQ-A8PX-01 21 44838243 44838243 G A SIK1 Silent p.S547S 0.20 TCGA-VQ-A8PX-01 21 47684078 47684078 A G MCM3AP Silent p.C1096C 0.14 TCGA-VQ-A8PX-01 21 47961804 47961804 T C DIP2A Silent p.P724P 0.16 TCGA-VQ-A8PX-01 22 16267029 16267029 C T POTEH Missense_Mutation p.A474T 0.04 tolerated(0.11) benign(0.219) TCGA-VQ-A8PX-01 22 19870869 19870869 G A TXNRD2 Silent p.Y355Y 0.10 TCGA-VQ-A8PX-01 22 20100976 20100976 G A TRMT2A Missense_Mutation p.R471W 0.14 deleterious(0.03) benign(0.052) TCGA-VQ-A8PX-01 22 25597377 25597377 A G CRYBB3 Missense_Mutation p.H5R 0.19 tolerated(0.18) benign(0.003) TCGA-VQ-A8PX-01 22 26100130 26100130 T G ADRBK2 Missense_Mutation p.L428V 0.15 deleterious(0.01) probably_damaging(0.969) TCGA-VQ-A8PX-01 22 31013483 31013483 G A TCN2 Splice_Site p.X369_splice 0.25 TCGA-VQ-A8PX-01 22 31285490 31285490 C T OSBP2 Missense_Mutation p.A497V 0.18 tolerated(0.14) benign(0.011) TCGA-VQ-A8PX-01 22 37462219 37462219 C - TMPRSS6 Frame_Shift_Del p.L780Wfs*23 0.25 TCGA-VQ-A8PX-01 22 38111885 38111885 C T TRIOBP Missense_Mutation p.P191L 0.23 deleterious_low_confidence(0) benign(0.145) TCGA-VQ-A8PX-01 22 38130773 38130773 G - TRIOBP Frame_Shift_Del p.G1479Afs*28 0.33 TCGA-VQ-A8PX-01 22 41222547 41222547 C A ST13 Missense_Mutation p.A369S 0.15 deleterious_low_confidence(0.04) benign(0.003) TCGA-VQ-A8PX-01 22 46654729 46654729 A G PKDREJ Silent p.V1497V 0.05 TCGA-VQ-A8PX-01 2 102641022 102641022 T C IL1R2 Missense_Mutation p.V260A 0.31 tolerated(0.06) probably_damaging(0.935) TCGA-VQ-A8PX-01 2 10929977 10929977 G A PDIA6 Silent p.G246G 0.18 TCGA-VQ-A8PX-01 2 113541299 113541299 A G IL1A Splice_Site p.X16_splice 0.16 TCGA-VQ-A8PX-01 2 125627303 125627303 A G CNTNAP5 Missense_Mutation p.R1133G 0.19 tolerated(0.1) benign(0.005) TCGA-VQ-A8PX-01 2 133543131 133543131 G - NCKAP5 Frame_Shift_Del p.P418Hfs*3 0.17 TCGA-VQ-A8PX-01 2 137852533 137852533 C A THSD7B Silent p.P347P 0.33 TCGA-VQ-A8PX-01 2 141299529 141299529 T C LRP1B Silent p.K2402K 0.20 TCGA-VQ-A8PX-01 2 141459297 141459297 T G LRP1B Missense_Mutation p.R2140S 0.13 benign(0.227) TCGA-VQ-A8PX-01 2 141946052 141946052 A G LRP1B Silent p.C317C 0.15 TCGA-VQ-A8PX-01 2 152112048 152112048 T - RBM43 Frame_Shift_Del p.V72Lfs*13 0.37 TCGA-VQ-A8PX-01 2 16082313 16082314 - C MYCN Frame_Shift_Ins p.E47Gfs*8 0.39 TCGA-VQ-A8PX-01 2 167055383 167055383 T G SCN9A Missense_Mutation p.R1911S 0.28 tolerated(0.66) benign(0.033) TCGA-VQ-A8PX-01 2 167055810 167055810 T C SCN9A Missense_Mutation p.E1769G 0.19 deleterious(0) probably_damaging(1) TCGA-VQ-A8PX-01 2 177036613 177036613 A G HOXD3 Missense_Mutation p.K304E 0.15 deleterious(0) benign(0.011) TCGA-VQ-A8PX-01 2 179341823 179341823 T C FKBP7 Missense_Mutation p.I113M 0.14 deleterious(0) probably_damaging(0.992) TCGA-VQ-A8PX-01 2 179398166 179398166 T C TTN Silent p.P34392P 0.38 TCGA-VQ-A8PX-01 2 179442179 179442179 C A TTN Silent p.G22961G 0.17 TCGA-VQ-A8PX-01 2 179610506 179610506 G A TTN Intron 0.50 TCGA-VQ-A8PX-01 2 182542949 182542949 G T NEUROD1 Silent p.S213S 0.16 TCGA-VQ-A8PX-01 2 183822203 183822203 T - NCKAP1 Frame_Shift_Del p.N674Tfs*5 0.22 TCGA-VQ-A8PX-01 2 196723510 196723510 T C DNAH7 Silent p.K2585K 0.12 TCGA-VQ-A8PX-01 2 20200211 20200211 T - MATN3 Frame_Shift_Del p.T387Hfs*10 0.13 TCGA-VQ-A8PX-01 2 207459530 207459530 G A ADAM23 Silent p.P716P 0.41 TCGA-VQ-A8PX-01 2 21235384 21235384 T C APOB Silent p.L1452L 0.29 TCGA-VQ-A8PX-01 2 220089556 220089556 C T ATG9A Silent p.T179T 0.22 TCGA-VQ-A8PX-01 2 227896674 227896674 A G COL4A4 Silent p.P1268P 0.19 TCGA-VQ-A8PX-01 2 232143170 232143170 A T ARMC9 Missense_Mutation p.E517V 0.11 deleterious(0) probably_damaging(0.954) TCGA-VQ-A8PX-01 2 233405369 233405369 C T CHRNG Silent p.L100L 0.30 TCGA-VQ-A8PX-01 2 234372920 234372920 C T DGKD Silent p.G1099G 0.16 TCGA-VQ-A8PX-01 2 234394592 234394592 G A USP40 Missense_Mutation p.R1088C 0.23 deleterious(0.02) possibly_damaging(0.888) TCGA-VQ-A8PX-01 2 234681161 234681161 A - UGT1A4 Frame_Shift_Del p.R524Efs*22 0.26 TCGA-VQ-A8PX-01 2 234774939 234774939 T C MSL3P1 RNA 0.12 TCGA-VQ-A8PX-01 2 239975204 239975204 A T HDAC4 Missense_Mutation p.V1056D 0.23 deleterious(0) possibly_damaging(0.814) TCGA-VQ-A8PX-01 2 241468835 241468835 A C ANKMY1 Missense_Mutation p.L102R 0.22 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8PX-01 2 27121556 27121556 C T DPYSL5 Silent p.I63I 0.31 TCGA-VQ-A8PX-01 2 31178591 31178591 G A GALNT14 Missense_Mutation p.R188W 0.12 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PX-01 2 31573031 31573031 C T XDH Missense_Mutation p.G897D 0.16 deleterious(0.03) probably_damaging(0.952) TCGA-VQ-A8PX-01 2 32626291 32626291 T C BIRC6 Silent p.N365N 0.37 TCGA-VQ-A8PX-01 2 36805789 36805789 T - FEZ2 Frame_Shift_Del p.N285Mfs*46 0.19 TCGA-VQ-A8PX-01 2 48602397 48602397 C T FOXN2 Missense_Mutation p.P371S 0.15 tolerated(0.26) benign(0.001) TCGA-VQ-A8PX-01 2 50765671 50765672 - T NRXN1 Frame_Shift_Ins p.N661Kfs*2 0.15 TCGA-VQ-A8PX-01 2 51255009 51255009 C T NRXN1 Missense_Mutation p.A135T 0.27 tolerated(0.71) benign(0.002) TCGA-VQ-A8PX-01 2 55403105 55403105 T C CLHC1 Missense_Mutation p.M528V 0.33 tolerated(0.62) benign(0.002) TCGA-VQ-A8PX-01 2 72360187 72360187 C T CYP26B1 Missense_Mutation p.G371S 0.13 deleterious(0.01) probably_damaging(0.974) TCGA-VQ-A8PX-01 2 74044018 74044018 C T C2orf78 Missense_Mutation p.R890C 0.39 deleterious(0) probably_damaging(0.99) TCGA-VQ-A8PX-01 2 74653241 74653241 A G RTKN 3'UTR 0.14 TCGA-VQ-A8PX-01 2 85778988 85778988 A G GGCX Missense_Mutation p.I519T 0.15 deleterious(0) possibly_damaging(0.641) TCGA-VQ-A8PX-01 2 86272845 86272845 C T POLR1A Silent p.P927P 0.43 TCGA-VQ-A8PX-01 2 89100800 89100800 A - ANKRD36BP2 RNA 0.18 TCGA-VQ-A8PX-01 3 107776321 107776321 T C CD47 Intron 0.12 TCGA-VQ-A8PX-01 3 11072861 11072862 - G SLC6A1 Splice_Site p.X443_splice 0.28 TCGA-VQ-A8PX-01 3 110852822 110852822 A - PVRL3 Frame_Shift_Del p.E473Kfs*6 0.20 TCGA-VQ-A8PX-01 3 112969630 112969630 G A BOC Missense_Mutation p.R109Q 0.40 tolerated(0.11) benign(0.064) TCGA-VQ-A8PX-01 3 113676665 113676665 T C ZDHHC23 Intron 0.27 TCGA-VQ-A8PX-01 3 114069611 114069611 T C ZBTB20 Silent p.E438E 0.06 TCGA-VQ-A8PX-01 3 119325652 119325652 C T PLA1A Silent p.C35C 0.30 TCGA-VQ-A8PX-01 3 122420084 122420084 T C PARP14 Missense_Mutation p.Y895H 0.27 tolerated(0.53) benign(0.014) TCGA-VQ-A8PX-01 3 124413291 124413291 T C AC080008.1 3'Flank 0.16 TCGA-VQ-A8PX-01 3 125195573 125195573 A G SNX4 Missense_Mutation p.Y252H 0.19 tolerated(0.39) benign(0.013) TCGA-VQ-A8PX-01 3 125727635 125727635 A C SLC41A3 Silent p.G398G 0.09 TCGA-VQ-A8PX-01 3 127801395 127801395 G A RUVBL1 Missense_Mutation p.T381M 0.39 tolerated(0.09) benign(0.086) TCGA-VQ-A8PX-01 3 130287283 130287283 C T COL6A6 Missense_Mutation p.R746W 0.42 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PX-01 3 131206521 131206521 T C MRPL3 Intron 0.24 TCGA-VQ-A8PX-01 3 132244996 132244996 A G DNAJC13 Silent p.R2084R 0.10 TCGA-VQ-A8PX-01 3 134086450 134086450 G A AMOTL2 Silent p.H310H 0.06 TCGA-VQ-A8PX-01 3 137843518 137843518 A - A4GNT Frame_Shift_Del p.L204Cfs*24 0.12 TCGA-VQ-A8PX-01 3 14197856 14197856 C T XPC Missense_Mutation p.R671H 0.26 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PX-01 3 14802995 14802995 A G C3orf20 Missense_Mutation p.K790E 0.23 deleterious(0) benign(0.052) TCGA-VQ-A8PX-01 3 150384676 150384676 C A FAM194A Missense_Mutation p.L542F 0.09 deleterious(0) probably_damaging(1) TCGA-VQ-A8PX-01 3 151012763 151012763 T G GPR87 Missense_Mutation p.T91P 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A8PX-01 3 151156152 151156152 G - IGSF10 Frame_Shift_Del p.P2066Qfs*14 0.13 TCGA-VQ-A8PX-01 3 156254499 156254499 G A KCNAB1 Missense_Mutation p.R408H 0.07 deleterious(0.01) possibly_damaging(0.532) TCGA-VQ-A8PX-01 3 164781250 164781250 A - SI Frame_Shift_Del p.L296* 0.14 TCGA-VQ-A8PX-01 3 167277927 167277927 G A WDR49 Silent p.N192N 0.24 TCGA-VQ-A8PX-01 3 169500391 169500391 T G MYNN Silent p.A453A 0.12 TCGA-VQ-A8PX-01 3 169550902 169550902 T C LRRIQ4 Silent p.C487C 0.30 TCGA-VQ-A8PX-01 3 172476808 172476808 T C ECT2 Silent p.S175S 0.14 TCGA-VQ-A8PX-01 3 180327883 180327883 T - TTC14 Frame_Shift_Del p.S624Pfs*28 0.17 TCGA-VQ-A8PX-01 3 184100216 184100216 C T CHRD Missense_Mutation p.R247W 0.26 deleterious(0.02) probably_damaging(1) TCGA-VQ-A8PX-01 3 190122664 190122664 T C CLDN16 Missense_Mutation p.Y181H 0.16 tolerated(0.51) benign(0.012) TCGA-VQ-A8PX-01 3 19436767 19436767 G T KCNH8 Nonsense_Mutation p.E381* 0.19 TCGA-VQ-A8PX-01 3 25675332 25675332 T A TOP2B Missense_Mutation p.K337N 0.15 deleterious(0) possibly_damaging(0.725) TCGA-VQ-A8PX-01 3 32932307 32932307 T G TRIM71 Silent p.G537G 0.10 TCGA-VQ-A8PX-01 3 35778829 35778829 A G ARPP21 Missense_Mutation p.Q506R 0.59 deleterious(0.02) benign(0.056) TCGA-VQ-A8PX-01 3 37053591 37053591 G A MLH1 Splice_Site p.X226_splice 0.33 TCGA-VQ-A8PX-01 3 39374148 39374148 T G CCR8 Missense_Mutation p.V109G 0.32 deleterious(0) probably_damaging(0.945) TCGA-VQ-A8PX-01 3 439917 439917 T C CHL1 Silent p.G1034G 0.12 TCGA-VQ-A8PX-01 3 49738090 49738090 A G RNF123 Missense_Mutation p.I409V 0.25 tolerated(0.85) benign(0.018) TCGA-VQ-A8PX-01 3 49851023 49851023 T C UBA7 Silent p.S38S 0.09 TCGA-VQ-A8PX-01 3 51697008 51697008 T C RAD54L2 Missense_Mutation p.Y1326H 0.10 tolerated_low_confidence(0.14) benign(0.038) TCGA-VQ-A8PX-01 3 52404219 52404219 T C DNAH1 Missense_Mutation p.F2078L 0.42 benign(0.008) TCGA-VQ-A8PX-01 3 52539929 52539929 T C STAB1 Missense_Mutation p.Y576H 0.12 tolerated(1) benign(0.014) TCGA-VQ-A8PX-01 3 62358244 62358244 C A FEZF2 Silent p.R100R 0.21 TCGA-VQ-A8PX-01 3 65428470 65428470 A G MAGI1 Missense_Mutation p.V378A 0.16 deleterious(0) probably_damaging(0.97) TCGA-VQ-A8PX-01 3 69151078 69151078 G - ARL6IP5 Frame_Shift_Del p.V89Sfs*5 0.19 TCGA-VQ-A8PX-01 3 71008431 71008431 G A FOXP1 Silent p.Y669Y 0.34 TCGA-VQ-A8PX-01 3 87017899 87017899 C G VGLL3 Missense_Mutation p.G260R 0.10 tolerated(0.09) probably_damaging(0.996) TCGA-VQ-A8PX-01 3 93780192 93780192 C A DHFRL1 Missense_Mutation p.R55M 0.11 deleterious(0) probably_damaging(0.949) TCGA-VQ-A8PX-01 4 10079057 10079057 A - WDR1 Frame_Shift_Del p.Y529Mfs*26 0.26 TCGA-VQ-A8PX-01 4 110884358 110884358 A G EGF Missense_Mutation p.S448G 0.20 deleterious(0) probably_damaging(0.987) TCGA-VQ-A8PX-01 4 110908947 110908947 A G EGF Missense_Mutation p.I847V 0.19 tolerated(1) benign(0.001) TCGA-VQ-A8PX-01 4 111441207 111441208 - T ENPEP Frame_Shift_Ins p.W520Lfs*9 0.23 TCGA-VQ-A8PX-01 4 123184035 123184035 A T KIAA1109 Silent p.L2293L 0.15 TCGA-VQ-A8PX-01 4 128722950 128722950 G A HSPA4L Silent p.A180A 0.21 TCGA-VQ-A8PX-01 4 13606462 13606462 C T BOD1L1 Missense_Mutation p.E688K 0.14 possibly_damaging(0.856) TCGA-VQ-A8PX-01 4 140811146 140811146 T C MAML3 Missense_Mutation p.M482V 0.17 benign(0.013) TCGA-VQ-A8PX-01 4 15530316 15530316 A - CC2D2A Frame_Shift_Del p.T480Pfs*31 0.12 TCGA-VQ-A8PX-01 4 156764906 156764906 A G ASIC5 Missense_Mutation p.V263A 0.11 tolerated(0.46) benign(0.026) TCGA-VQ-A8PX-01 4 177113776 177113776 A G SPATA4 Splice_Site p.X230_splice 0.24 TCGA-VQ-A8PX-01 4 177713361 177713361 T C VEGFC Silent p.G35G 0.23 TCGA-VQ-A8PX-01 4 1827321 1827321 C T LETM1 Silent p.T390T 0.07 TCGA-VQ-A8PX-01 4 185593424 185593424 T - PRIMPOL Frame_Shift_Del p.S220Qfs*47 0.21 TCGA-VQ-A8PX-01 4 187628951 187628951 A G FAT1 Silent p.T677T 0.13 TCGA-VQ-A8PX-01 4 2242633 2242633 A T HAUS3 Missense_Mutation p.I14N 0.30 deleterious(0) possibly_damaging(0.824) TCGA-VQ-A8PX-01 4 47538491 47538491 T - ATP10D Frame_Shift_Del p.F353Sfs*24 0.12 TCGA-VQ-A8PX-01 4 47938962 47938962 A G CNGA1 Missense_Mutation p.Y586H 0.05 deleterious(0) probably_damaging(1) TCGA-VQ-A8PX-01 4 57839415 57839415 T C NOA1 Missense_Mutation p.M472V 0.27 tolerated(0.57) benign(0.003) TCGA-VQ-A8PX-01 4 5843053 5843053 C T CRMP1 Missense_Mutation p.A379T 0.12 tolerated(0.12) benign(0.005) TCGA-VQ-A8PX-01 4 62849283 62849283 A G LPHN3 Silent p.S998S 0.16 TCGA-VQ-A8PX-01 4 62897159 62897159 G T LPHN3 Splice_Site p.X1073_splice 0.18 TCGA-VQ-A8PX-01 4 66467513 66467513 A G EPHA5 Silent p.S252S 0.10 TCGA-VQ-A8PX-01 4 71465335 71465335 T C AMBN Missense_Mutation p.M89T 0.10 deleterious(0) benign(0.317) TCGA-VQ-A8PX-01 4 71527833 71527833 A G IGJ Missense_Mutation p.I55T 0.10 deleterious(0.02) benign(0.065) TCGA-VQ-A8PX-01 4 72620738 72620738 T C GC Missense_Mutation p.E393G 0.08 tolerated(0.19) benign(0.01) TCGA-VQ-A8PX-01 4 75314847 75314847 A - AREG Frame_Shift_Del p.N133Mfs*30 0.41 TCGA-VQ-A8PX-01 4 75937990 75937990 C T PARM1 Silent p.G133G 0.10 TCGA-VQ-A8PX-01 4 76891521 76891521 T - SDAD1 Frame_Shift_Del p.K275Rfs*15 0.11 TCGA-VQ-A8PX-01 4 77097059 77097059 G A SCARB2 Missense_Mutation p.L237F 0.09 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PX-01 4 85742445 85742445 T G WDFY3 Missense_Mutation p.K461N 0.09 deleterious(0) probably_damaging(0.986) TCGA-VQ-A8PX-01 4 8583093 8583093 C A GPR78 Silent p.G128G 0.29 TCGA-VQ-A8PX-01 4 87680109 87680109 T C PTPN13 Missense_Mutation p.S1146P 0.13 deleterious(0) probably_damaging(1) TCGA-VQ-A8PX-01 4 88584464 88584464 G A DMP1 Missense_Mutation p.G512S 0.09 deleterious(0) unknown(0) TCGA-VQ-A8PX-01 4 90170767 90170767 C T GPRIN3 Silent p.E165E 0.12 TCGA-VQ-A8PX-01 4 95199765 95199765 A G SMARCAD1 Splice_Site p.X727_splice 0.14 TCGA-VQ-A8PX-01 5 109103388 109103388 T - MAN2A1 Frame_Shift_Del p.W332Gfs*17 0.25 TCGA-VQ-A8PX-01 5 114861081 114861081 T - FEM1C Frame_Shift_Del p.R260Efs*7 0.16 TCGA-VQ-A8PX-01 5 118582732 118582732 A G DMXL1 Missense_Mutation p.S2968G 0.11 tolerated(0.58) benign(0.025) TCGA-VQ-A8PX-01 5 118872119 118872119 T C HSD17B4 Silent p.T690T 0.27 TCGA-VQ-A8PX-01 5 131533920 131533920 A G P4HA2 Silent p.R450R 0.09 TCGA-VQ-A8PX-01 5 131543503 131543503 G T P4HA2 Silent p.P326P 0.11 TCGA-VQ-A8PX-01 5 131995907 131995907 T C IL13 Missense_Mutation p.V125A 0.11 deleterious(0.03) probably_damaging(0.981) TCGA-VQ-A8PX-01 5 139189269 139189270 - C PSD2 Frame_Shift_Ins p.L83Pfs*37 0.13 TCGA-VQ-A8PX-01 5 139197092 139197092 G T PSD2 Missense_Mutation p.G348V 0.09 deleterious(0.01) probably_damaging(0.944) TCGA-VQ-A8PX-01 5 140168302 140168303 - T PCDHA1 Intron 0.09 TCGA-VQ-A8PX-01 5 140256842 140256842 C T PCDHA12 Silent p.R595R 0.19 TCGA-VQ-A8PX-01 5 140306520 140306520 T C PCDHAC1 Missense_Mutation p.C15R 0.22 deleterious(0.01) benign(0.017) TCGA-VQ-A8PX-01 5 140474720 140474720 T C PCDHB2 Silent p.L116L 0.16 TCGA-VQ-A8PX-01 5 140482199 140482199 G A PCDHB3 Missense_Mutation p.A656T 0.33 deleterious_low_confidence(0.01) benign(0.105) TCGA-VQ-A8PX-01 5 140553866 140553866 G A PCDHB7 Missense_Mutation p.A484T 0.10 deleterious_low_confidence(0) probably_damaging(0.926) TCGA-VQ-A8PX-01 5 140580437 140580437 G A PCDHB11 Missense_Mutation p.V364M 0.16 deleterious_low_confidence(0.03) possibly_damaging(0.507) TCGA-VQ-A8PX-01 5 140594222 140594222 A C PCDHB13 Missense_Mutation p.N176T 0.16 deleterious_low_confidence(0.01) benign(0.233) TCGA-VQ-A8PX-01 5 140626152 140626152 A G PCDHB15 Missense_Mutation p.K336E 0.06 tolerated_low_confidence(0.55) benign(0.001) TCGA-VQ-A8PX-01 5 141019131 141019131 A C RELL2 Silent p.R140R 0.22 TCGA-VQ-A8PX-01 5 141337067 141337067 G A PCDH12 Missense_Mutation p.A117V 0.11 tolerated(0.14) benign(0.111) TCGA-VQ-A8PX-01 5 141515328 141515328 G C NDFIP1 Missense_Mutation p.D106H 0.09 deleterious(0.01) probably_damaging(0.978) TCGA-VQ-A8PX-01 5 145613244 145613244 T C RBM27 Missense_Mutation p.M361T 0.43 deleterious(0) benign(0.104) TCGA-VQ-A8PX-01 5 147024547 147024547 G A JAKMIP2 Missense_Mutation p.R317W 0.40 deleterious(0) probably_damaging(0.992) TCGA-VQ-A8PX-01 5 149932775 149932775 T C NDST1 Missense_Mutation p.S844P 0.10 deleterious(0.01) probably_damaging(0.992) TCGA-VQ-A8PX-01 5 150515877 150515877 C A ANXA6 Missense_Mutation p.E143D 0.16 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8PX-01 5 151045951 151045951 G A SPARC Silent p.F235F 0.17 TCGA-VQ-A8PX-01 5 159343857 159343857 C T ADRA1B 5'UTR 0.18 TCGA-VQ-A8PX-01 5 159776163 159776163 G A C1QTNF2 3'UTR 0.08 TCGA-VQ-A8PX-01 5 160047668 160047668 T C ATP10B Missense_Mutation p.E701G 0.11 tolerated(0.16) benign(0.076) TCGA-VQ-A8PX-01 5 162945258 162945258 C G MAT2B Silent p.S298S 0.12 TCGA-VQ-A8PX-01 5 169230071 169230071 A G DOCK2 Missense_Mutation p.D855G 0.09 tolerated(0.22) benign(0.055) TCGA-VQ-A8PX-01 5 171517345 171517345 T - STK10 Frame_Shift_Del p.T526Pfs*15 0.30 TCGA-VQ-A8PX-01 5 176002145 176002145 G A CDHR2 Missense_Mutation p.V186I 0.12 tolerated(0.55) benign(0.003) TCGA-VQ-A8PX-01 5 176385109 176385110 AC - UIMC1 Frame_Shift_Del p.V416Tfs*12 0.09 TCGA-VQ-A8PX-01 5 176636852 176636852 A G NSD1 Silent p.E484E 0.06 TCGA-VQ-A8PX-01 5 176936615 176936615 C T DOK3 Missense_Mutation p.C32Y 0.51 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-VQ-A8PX-01 5 177468706 177468706 A T FAM153C Missense_Mutation p.D49V 0.15 deleterious_low_confidence(0.01) benign(0.024) TCGA-VQ-A8PX-01 5 179290808 179290809 - C TBC1D9B Frame_Shift_Ins p.S1132Qfs*14 0.26 TCGA-VQ-A8PX-01 5 180582318 180582318 G A OR2V2 Missense_Mutation p.A126T 0.06 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PX-01 5 37064801 37064801 C T NIPBL Missense_Mutation p.A2741V 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.471) TCGA-VQ-A8PX-01 5 43644852 43644852 A G NNT Missense_Mutation p.D413G 0.10 deleterious(0.01) benign(0.02) TCGA-VQ-A8PX-01 5 5461757 5461757 A G KIAA0947 Silent p.S770S 0.20 TCGA-VQ-A8PX-01 5 58287751 58287751 C A PDE4D Nonsense_Mutation p.G366* 0.50 TCGA-VQ-A8PX-01 5 65349429 65349429 T A ERBB2IP Missense_Mutation p.D761E 0.08 deleterious_low_confidence(0) benign(0.129) TCGA-VQ-A8PX-01 5 71630872 71630872 A G PTCD2 Missense_Mutation p.T166A 0.08 deleterious(0.01) probably_damaging(0.995) TCGA-VQ-A8PX-01 5 74014677 74014677 T C HEXB Missense_Mutation p.L433P 0.12 deleterious(0) possibly_damaging(0.613) TCGA-VQ-A8PX-01 5 77334915 77334915 C T AP3B1 Missense_Mutation p.E921K 0.31 tolerated(0.37) benign(0.292) TCGA-VQ-A8PX-01 5 79351659 79351659 A G THBS4 Missense_Mutation p.N115S 0.17 tolerated(0.18) probably_damaging(0.965) TCGA-VQ-A8PX-01 5 82815520 82815520 C T VCAN Silent p.G465G 0.35 TCGA-VQ-A8PX-01 5 82876169 82876169 T A VCAN Missense_Mutation p.N3369K 0.18 deleterious(0) benign(0.066) TCGA-VQ-A8PX-01 5 86708465 86708465 G A CCNH Intron 0.09 TCGA-VQ-A8PX-01 5 94878991 94878991 A C TTC37 Missense_Mutation p.V44G 0.09 deleterious(0) probably_damaging(1) TCGA-VQ-A8PX-01 6 101086489 101086489 G T ASCC3 Nonsense_Mutation p.Y1370* 0.18 TCGA-VQ-A8PX-01 6 10756816 10756816 T C TMEM14B 3'UTR 0.37 TCGA-VQ-A8PX-01 6 108984785 108984785 G A FOXO3 Missense_Mutation p.R250Q 0.16 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PX-01 6 110988761 110988761 T C CDK19 Missense_Mutation p.H111R 0.17 deleterious(0) possibly_damaging(0.865) TCGA-VQ-A8PX-01 6 111697179 111697179 T C REV3L Silent p.A793A 0.22 TCGA-VQ-A8PX-01 6 122766229 122766229 A C SERINC1 Missense_Mutation p.L441R 0.11 deleterious(0) probably_damaging(1) TCGA-VQ-A8PX-01 6 128134568 128134568 T - THEMIS Frame_Shift_Del p.V407Wfs*2 0.22 TCGA-VQ-A8PX-01 6 132182841 132182841 A G ENPP1 Missense_Mutation p.N341S 0.19 tolerated(0.21) probably_damaging(0.983) TCGA-VQ-A8PX-01 6 138584006 138584006 G T KIAA1244 Missense_Mutation p.K462N 0.11 deleterious(0.01) possibly_damaging(0.503) TCGA-VQ-A8PX-01 6 144508139 144508139 G A STX11 Silent p.A125A 0.30 TCGA-VQ-A8PX-01 6 151152649 151152649 A G PLEKHG1 Missense_Mutation p.Q801R 0.34 tolerated(0.86) benign(0.261) TCGA-VQ-A8PX-01 6 151670322 151670323 AA - AKAP12 Frame_Shift_Del p.K266Rfs*12 0.33 TCGA-VQ-A8PX-01 6 152534825 152534825 T C SYNE1 Silent p.L7472L 0.16 TCGA-VQ-A8PX-01 6 152642453 152642453 A C SYNE1 Missense_Mutation p.L5386V 0.13 benign(0.034) TCGA-VQ-A8PX-01 6 154727590 154727590 T C CNKSR3 Silent p.E522E 0.06 TCGA-VQ-A8PX-01 6 15496821 15496821 G A JARID2 Silent p.S455S 0.16 TCGA-VQ-A8PX-01 6 15524855 15524855 A G DTNBP1 Missense_Mutation p.L238P 0.07 deleterious(0) probably_damaging(1) TCGA-VQ-A8PX-01 6 158923060 158923060 G A TULP4 Missense_Mutation p.G789S 0.23 tolerated_low_confidence(0.32) benign(0.001) TCGA-VQ-A8PX-01 6 160328137 160328137 T C MAS1 Silent p.N50N 0.15 TCGA-VQ-A8PX-01 6 160679543 160679543 C T SLC22A2 Missense_Mutation p.E83K 0.19 tolerated(0.65) benign(0.014) TCGA-VQ-A8PX-01 6 170667345 170667345 C T FAM120B Missense_Mutation p.A741V 0.18 deleterious(0) probably_damaging(0.969) TCGA-VQ-A8PX-01 6 24447167 24447167 G A GPLD1 Silent p.G573G 0.10 TCGA-VQ-A8PX-01 6 25850118 25850118 C T SLC17A3 Missense_Mutation p.A396T 0.19 tolerated(1) benign(0.023) TCGA-VQ-A8PX-01 6 26509082 26509082 C T BTN1A1 Missense_Mutation p.R421W 0.13 deleterious(0.02) probably_damaging(0.991) TCGA-VQ-A8PX-01 6 28295180 28295180 A C ZSCAN31 Missense_Mutation p.L171R 0.17 tolerated(0.53) benign(0.057) TCGA-VQ-A8PX-01 6 30071941 30071941 C T TRIM31 Missense_Mutation p.G321D 0.11 tolerated(0.2) benign(0.051) TCGA-VQ-A8PX-01 6 30621048 30621048 T - DHX16 Frame_Shift_Del p.I1033* 0.10 TCGA-VQ-A8PX-01 6 30858875 30858875 G T DDR1 Missense_Mutation p.E181D 0.11 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PX-01 6 30888853 30888853 G - VARS2 Frame_Shift_Del p.A529Pfs*41 0.16 TCGA-VQ-A8PX-01 6 31613222 31613222 T C BAG6 Missense_Mutation p.T366A 0.13 tolerated(0.47) benign(0.014) TCGA-VQ-A8PX-01 6 31687927 31687927 G T LY6G6C Silent p.R36R 0.09 TCGA-VQ-A8PX-01 6 31737549 31737549 G T VWA7 Missense_Mutation p.P407H 0.17 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8PX-01 6 31850725 31850725 T C EHMT2 Missense_Mutation p.Q1019R 0.10 tolerated(0.53) probably_damaging(0.947) TCGA-VQ-A8PX-01 6 31921551 31921551 G A NELFE Missense_Mutation p.P334S 0.10 deleterious(0) unknown(0) TCGA-VQ-A8PX-01 6 32017140 32017140 C A TNXB 5'Flank 0.17 TCGA-VQ-A8PX-01 6 32169998 32169998 A G NOTCH4 Missense_Mutation p.S1204P 0.31 deleterious(0) probably_damaging(0.928) TCGA-VQ-A8PX-01 6 33255416 33255416 C T WDR46 Missense_Mutation p.V235I 0.23 deleterious(0) probably_damaging(0.994) TCGA-VQ-A8PX-01 6 34574471 34574471 T - C6orf106 Frame_Shift_Del p.N241Tfs*29 0.18 TCGA-VQ-A8PX-01 6 36945015 36945015 G A MTCH1 Missense_Mutation p.R221C 0.34 deleterious(0.02) probably_damaging(0.992) TCGA-VQ-A8PX-01 6 40399690 40399690 C T LRFN2 Missense_Mutation p.R388H 0.11 tolerated(0.59) benign(0.006) TCGA-VQ-A8PX-01 6 42832627 42832627 A - GLTSCR1L Frame_Shift_Del p.T897Qfs*8 0.16 TCGA-VQ-A8PX-01 6 43020391 43020391 G A CUL7 Missense_Mutation p.R98W 0.16 deleterious(0) possibly_damaging(0.843) TCGA-VQ-A8PX-01 6 53516962 53516962 G A KLHL31 Nonsense_Mutation p.Q447* 0.17 TCGA-VQ-A8PX-01 6 54212170 54212170 G A TINAG Missense_Mutation p.A252T 0.17 deleterious(0) possibly_damaging(0.825) TCGA-VQ-A8PX-01 6 5431374 5431374 C T FARS2 Silent p.C291C 0.32 TCGA-VQ-A8PX-01 6 55300439 55300439 T C HMGCLL1 3'UTR 0.09 TCGA-VQ-A8PX-01 6 75860917 75860917 A G COL12A1 Missense_Mutation p.S1363P 0.05 possibly_damaging(0.718) TCGA-VQ-A8PX-01 6 80202336 80202336 T - LCA5 Frame_Shift_Del p.N296Ifs*20 0.12 TCGA-VQ-A8PX-01 6 82461464 82461464 T C FAM46A Missense_Mutation p.D132G 0.15 deleterious(0.02) benign(0.123) TCGA-VQ-A8PX-01 6 88331733 88331733 T C ORC3 Splice_Site p.X395_splice 0.13 TCGA-VQ-A8PX-01 6 89975356 89975356 C T GABRR2 Missense_Mutation p.A289T 0.11 deleterious(0.03) probably_damaging(1) TCGA-VQ-A8PX-01 6 97681825 97681825 T A MMS22L Missense_Mutation p.Y405F 0.31 deleterious(0.03) benign(0.143) TCGA-VQ-A8PX-01 7 100029248 100029248 C - MEPCE Frame_Shift_Del p.Q538Kfs*52 0.20 TCGA-VQ-A8PX-01 7 100686506 100686506 A G MUC17 Missense_Mutation p.T3937A 0.12 benign(0.001) TCGA-VQ-A8PX-01 7 126544155 126544156 - T GRM8 Frame_Shift_Ins p.L297Tfs*14 0.14 TCGA-VQ-A8PX-01 7 12662430 12662430 T C SCIN Missense_Mutation p.L224S 0.24 deleterious(0) probably_damaging(1) TCGA-VQ-A8PX-01 7 127013701 127013702 - T ZNF800 Frame_Shift_Ins p.P564Afs*3 0.09 TCGA-VQ-A8PX-01 7 129096306 129096306 G A STRIP2 Silent p.L287L 0.11 TCGA-VQ-A8PX-01 7 131194310 131194310 G T PODXL Silent p.T279T 0.14 TCGA-VQ-A8PX-01 7 133602458 133602458 G T EXOC4 Missense_Mutation p.R665M 0.19 deleterious(0.02) possibly_damaging(0.894) TCGA-VQ-A8PX-01 7 134346263 134346263 T C BPGM Missense_Mutation p.S2P 0.07 tolerated(0.07) benign(0.247) TCGA-VQ-A8PX-01 7 135258404 135258404 A - NUP205 Frame_Shift_Del p.N60Mfs*70 0.10 TCGA-VQ-A8PX-01 7 135311088 135311088 G A NUP205 Missense_Mutation p.R1591H 0.11 tolerated(0.11) possibly_damaging(0.846) TCGA-VQ-A8PX-01 7 138554406 138554406 G A KIAA1549 Silent p.D1551D 0.29 TCGA-VQ-A8PX-01 7 138579249 138579249 A G KIAA1549 Missense_Mutation p.S1291P 0.08 tolerated(0.54) probably_damaging(0.938) TCGA-VQ-A8PX-01 7 149477913 149477913 G A SSPO RNA 0.12 TCGA-VQ-A8PX-01 7 149529880 149529880 T C SSPO RNA 0.31 TCGA-VQ-A8PX-01 7 150558259 150558259 C - AOC1 Frame_Shift_Del p.P741Lfs*54 0.22 TCGA-VQ-A8PX-01 7 150935111 150935111 C A CHPF2 Silent p.R555R 0.19 TCGA-VQ-A8PX-01 7 20198714 20198714 A C MACC1 Missense_Mutation p.S424A 0.11 tolerated(0.15) benign(0.257) TCGA-VQ-A8PX-01 7 28848877 28848877 G A CREB5 Missense_Mutation p.R367Q 0.20 tolerated(0.05) unknown(0) TCGA-VQ-A8PX-01 7 38812175 38812175 C A VPS41 Nonsense_Mutation p.E359* 0.20 TCGA-VQ-A8PX-01 7 4051800 4051800 A C SDK1 Missense_Mutation p.I785L 0.14 deleterious(0.01) possibly_damaging(0.777) TCGA-VQ-A8PX-01 7 42063149 42063149 T C GLI3 Missense_Mutation p.Q472R 0.21 deleterious(0.02) possibly_damaging(0.7) TCGA-VQ-A8PX-01 7 48015232 48015233 - T HUS1 Frame_Shift_Ins p.M173Nfs*11 0.28 TCGA-VQ-A8PX-01 7 4830834 4830834 C T AP5Z1 Missense_Mutation p.R748C 0.10 tolerated(0.16) benign(0.003) TCGA-VQ-A8PX-01 7 4871778 4871778 G A RADIL Missense_Mutation p.A483V 0.23 tolerated(0.07) possibly_damaging(0.664) TCGA-VQ-A8PX-01 7 5036274 5036274 C T RNF216P1 RNA 0.19 TCGA-VQ-A8PX-01 7 55220281 55220281 G A EGFR Missense_Mutation p.R224H 0.11 tolerated(0.15) probably_damaging(0.918) TCGA-VQ-A8PX-01 7 64529141 64529141 A G SNORA22 3'Flank 0.25 TCGA-VQ-A8PX-01 7 66563551 66563551 C T TYW1 Missense_Mutation p.R470C 0.14 deleterious(0) probably_damaging(0.928) TCGA-VQ-A8PX-01 7 66703535 66703535 T C TYW1 3'UTR 0.24 TCGA-VQ-A8PX-01 7 70255181 70255181 T C AUTS2 Silent p.P993P 0.19 TCGA-VQ-A8PX-01 7 72419227 72419227 A G POM121 3'UTR 0.22 TCGA-VQ-A8PX-01 7 73458234 73458234 A G ELN Silent p.P151P 0.14 TCGA-VQ-A8PX-01 7 77402593 77402593 T C RSBN1L Silent p.A585A 0.16 TCGA-VQ-A8PX-01 7 92926147 92926147 A T CCDC132 Missense_Mutation p.R421W 0.21 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PX-01 7 95217067 95217067 A G PDK4 Missense_Mutation p.V281A 0.13 tolerated(0.78) probably_damaging(0.998) TCGA-VQ-A8PX-01 7 96318150 96318150 T - SHFM1 3'UTR 0.30 TCGA-VQ-A8PX-01 7 96639212 96639212 G A DLX6 Silent p.S245S 0.17 TCGA-VQ-A8PX-01 7 96653792 96653792 G A DLX5 Silent p.Y48Y 0.15 TCGA-VQ-A8PX-01 7 97874267 97874267 G A TECPR1 Missense_Mutation p.S113L 0.12 deleterious(0) probably_damaging(0.99) TCGA-VQ-A8PX-01 7 99971833 99971833 C T PILRA Silent p.H77H 0.20 TCGA-VQ-A8PX-01 8 100789121 100789121 G A VPS13B Missense_Mutation p.V2481I 0.21 tolerated(0.44) benign(0) TCGA-VQ-A8PX-01 8 101206437 101206437 A G SPAG1 Missense_Mutation p.N346S 0.21 tolerated(0.07) benign(0.055) TCGA-VQ-A8PX-01 8 104066204 104066204 T C ATP6V1C1 Missense_Mutation p.V189A 0.06 deleterious(0) possibly_damaging(0.61) TCGA-VQ-A8PX-01 8 10466551 10466551 G A RP1L1 Missense_Mutation p.A1686V 0.07 unknown(0) TCGA-VQ-A8PX-01 8 105010428 105010428 A T RIMS2 Intron 0.20 TCGA-VQ-A8PX-01 8 113318352 113318352 G A CSMD3 Missense_Mutation p.T2652M 0.14 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8PX-01 8 113585880 113585880 C T CSMD3 Missense_Mutation p.D1298N 0.07 deleterious(0.01) probably_damaging(0.981) TCGA-VQ-A8PX-01 8 121013832 121013832 C T DEPTOR Nonsense_Mutation p.R225* 0.07 TCGA-VQ-A8PX-01 8 124027772 124027772 G - DERL1 Frame_Shift_Del p.P224Lfs*4 0.11 TCGA-VQ-A8PX-01 8 124335279 124335279 T - ATAD2 Frame_Shift_Del p.S1344Vfs*15 0.23 TCGA-VQ-A8PX-01 8 125052204 125052204 C T FER1L6 Missense_Mutation p.P849L 0.08 deleterious(0) probably_damaging(0.969) TCGA-VQ-A8PX-01 8 126071731 126071731 G T KIAA0196 Silent p.A525A 0.13 TCGA-VQ-A8PX-01 8 128972895 128972895 T C MIR1205 RNA 0.14 TCGA-VQ-A8PX-01 8 141370147 141370147 A G TRAPPC9 Splice_Site p.X597_splice 0.12 TCGA-VQ-A8PX-01 8 142170768 142170768 G A DENND3 Missense_Mutation p.A332T 0.14 tolerated(0.14) benign(0.296) TCGA-VQ-A8PX-01 8 144397939 144397939 G A TOP1MT Missense_Mutation p.A504V 0.07 deleterious(0.03) possibly_damaging(0.545) TCGA-VQ-A8PX-01 8 144804362 144804362 G T MAPK15 Missense_Mutation p.G526W 0.17 deleterious(0) probably_damaging(1) TCGA-VQ-A8PX-01 8 144811254 144811254 C T FAM83H Missense_Mutation p.R207H 0.09 deleterious(0) probably_damaging(1) TCGA-VQ-A8PX-01 8 144991011 144991011 G T PLEC Silent p.T4463T 0.06 TCGA-VQ-A8PX-01 8 145621891 145621891 G A CPSF1 Silent p.G916G 0.11 TCGA-VQ-A8PX-01 8 145745766 145745766 T C LRRC14 Silent p.P158P 0.14 TCGA-VQ-A8PX-01 8 145947752 145947752 T G ZNF251 Missense_Mutation p.K431N 0.09 deleterious(0.02) possibly_damaging(0.758) TCGA-VQ-A8PX-01 8 146017463 146017463 C G RPL8 Missense_Mutation p.A18P 0.10 deleterious(0) probably_damaging(0.955) TCGA-VQ-A8PX-01 8 21848409 21848409 C T XPO7 Missense_Mutation p.R674C 0.09 deleterious(0) probably_damaging(0.985) TCGA-VQ-A8PX-01 8 22863481 22863481 T C RHOBTB2 Missense_Mutation p.V124A 0.10 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PX-01 8 23708834 23708834 T C STC1 Missense_Mutation p.R158G 0.14 tolerated(0.23) probably_damaging(0.998) TCGA-VQ-A8PX-01 8 24298588 24298588 G T ADAM7 5'UTR 0.14 TCGA-VQ-A8PX-01 8 35579777 35579777 C T UNC5D Silent p.A389A 0.04 TCGA-VQ-A8PX-01 8 36793100 36793100 C A KCNU1 Missense_Mutation p.P1038T 0.28 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8PX-01 8 41791555 41791555 C T KAT6A Missense_Mutation p.D1395N 0.07 unknown(0) TCGA-VQ-A8PX-01 8 42176868 42176868 A C IKBKB Missense_Mutation p.K482T 0.07 deleterious(0.03) benign(0.343) TCGA-VQ-A8PX-01 8 42611509 42611509 A G CHRNA6 Missense_Mutation p.V278A 0.14 deleterious(0) probably_damaging(1) TCGA-VQ-A8PX-01 8 53574142 53574142 A G RB1CC1 Silent p.C437C 0.08 TCGA-VQ-A8PX-01 8 54147463 54147463 G T OPRK1 Missense_Mutation p.R156S 0.09 deleterious(0) probably_damaging(1) TCGA-VQ-A8PX-01 8 57079883 57079883 G A PLAG1 Missense_Mutation p.A141V 0.12 deleterious(0) probably_damaging(0.983) TCGA-VQ-A8PX-01 8 67926707 67926707 T C PPP1R42 Missense_Mutation p.I84V 0.13 deleterious(0) possibly_damaging(0.868) TCGA-VQ-A8PX-01 8 68334723 68334723 T C CPA6 3'UTR 0.11 TCGA-VQ-A8PX-01 8 72987652 72987653 - C TRPA1 5'UTR 0.29 TCGA-VQ-A8PX-01 8 77763994 77763994 A T ZFHX4 Missense_Mutation p.R1613W 0.09 possibly_damaging(0.827) TCGA-VQ-A8PX-01 8 81897116 81897116 T C PAG1 Silent p.P257P 0.08 TCGA-VQ-A8PX-01 8 87229784 87229784 A - SLC7A13 Frame_Shift_Del p.F365Sfs*10 0.17 TCGA-VQ-A8PX-01 8 94747251 94747251 C T RBM12B Missense_Mutation p.R463Q 0.37 tolerated(0.4) benign(0.225) TCGA-VQ-A8PX-01 8 97157163 97157163 C G GDF6 Silent p.R332R 0.32 TCGA-VQ-A8PX-01 8 98736901 98736901 T - MTDH 3'UTR 0.27 TCGA-VQ-A8PX-01 9 104152971 104152971 T A MRPL50 Missense_Mutation p.N85I 0.14 deleterious(0) possibly_damaging(0.786) TCGA-VQ-A8PX-01 9 104238626 104238627 CT - TMEM246 Frame_Shift_Del p.R250Afs*40 0.22 TCGA-VQ-A8PX-01 9 108382270 108382270 T - FKTN Frame_Shift_Del p.F369Sfs*37 0.28 TCGA-VQ-A8PX-01 9 109690268 109690268 T C ZNF462 Missense_Mutation p.S1359P 0.13 benign(0.272) TCGA-VQ-A8PX-01 9 114864464 114864464 T G SUSD1 Missense_Mutation p.M425L 0.19 tolerated(0.17) benign(0.018) TCGA-VQ-A8PX-01 9 119461838 119461838 G A TRIM32 Missense_Mutation p.G606E 0.10 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PX-01 9 123686064 123686064 G A TRAF1 Silent p.G49G 0.12 TCGA-VQ-A8PX-01 9 125377792 125377792 A G OR1Q1 Missense_Mutation p.Y259C 0.17 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PX-01 9 125513025 125513025 G T OR1L6 Missense_Mutation p.R300M 0.14 tolerated(0.08) benign(0.013) TCGA-VQ-A8PX-01 9 125645544 125645544 T C RC3H2 Missense_Mutation p.Q233R 0.16 deleterious(0) possibly_damaging(0.838) TCGA-VQ-A8PX-01 9 125782719 125782719 A G RABGAP1 Missense_Mutation p.Y592C 0.15 deleterious(0) probably_damaging(1) TCGA-VQ-A8PX-01 9 131388890 131388890 T C SPTAN1 Missense_Mutation p.V2167A 0.39 deleterious(0.01) probably_damaging(0.985) TCGA-VQ-A8PX-01 9 131591092 131591093 - T C9orf114 Frame_Shift_Ins p.L44Tfs*68 0.09 TCGA-VQ-A8PX-01 9 136518087 136518087 C - DBH Frame_Shift_Del p.T467Sfs*86 0.10 TCGA-VQ-A8PX-01 9 139400052 139400052 G A NOTCH1 Silent p.F1432F 0.43 TCGA-VQ-A8PX-01 9 19347055 19347055 G A DENND4C Missense_Mutation p.A1381T 0.16 tolerated(0.31) benign(0.017) TCGA-VQ-A8PX-01 9 33675352 33675352 T C PTENP1 RNA 0.24 TCGA-VQ-A8PX-01 9 72131173 72131173 C T APBA1 Silent p.A318A 0.62 TCGA-VQ-A8PX-01 9 72785320 72785320 T C MAMDC2 Intron 0.12 TCGA-VQ-A8PX-01 9 80049300 80049300 A G GNA14 Missense_Mutation p.S150P 0.24 deleterious(0.05) probably_damaging(0.993) TCGA-VQ-A8PX-01 9 84608742 84608742 A C SPATA31D1 Missense_Mutation p.Q1119H 0.17 deleterious(0.01) probably_damaging(0.986) TCGA-VQ-A8PX-01 9 88903616 88903616 C T ZCCHC6 Silent p.A1488A 0.11 TCGA-VQ-A8PX-01 9 91616522 91616522 G A S1PR3 Missense_Mutation p.R136Q 0.34 deleterious(0) probably_damaging(1) TCGA-VQ-A8PX-01 9 92003699 92003699 A G SEMA4D Missense_Mutation p.V320A 0.19 tolerated(0.06) possibly_damaging(0.633) TCGA-VQ-A8PX-01 9 95004436 95004436 C A IARS Missense_Mutation p.Q1059H 0.12 tolerated(0.05) possibly_damaging(0.737) TCGA-VQ-A8PX-01 9 95219618 95219618 A C ASPN Silent p.R365R 0.11 TCGA-VQ-A8PX-01 9 96021234 96021234 C - WNK2 Frame_Shift_Del p.I804Sfs*35 0.12 TCGA-VQ-A8PX-01 X 10106941 10106941 C T WWC3 Missense_Mutation p.R1017W 0.80 deleterious(0) probably_damaging(0.992) TCGA-VQ-A8PX-01 X 106843655 106843655 A G FRMPD3 Missense_Mutation p.T829A 0.26 tolerated(1) benign(0.009) TCGA-VQ-A8PX-01 X 107224932 107224933 CT - TEX13B Frame_Shift_Del p.E142Afs*41 0.23 TCGA-VQ-A8PX-01 X 107315977 107315978 TC - VSIG1 Frame_Shift_Del p.S199Cfs*13 0.39 TCGA-VQ-A8PX-01 X 112033912 112033912 T G AMOT Missense_Mutation p.E675D 0.21 unknown(0) TCGA-VQ-A8PX-01 X 114141188 114141188 A G HTR2C Missense_Mutation p.D196G 0.33 deleterious(0.01) benign(0.261) TCGA-VQ-A8PX-01 X 123514593 123514593 C A TENM1 Missense_Mutation p.Q2664H 0.05 tolerated(0.13) possibly_damaging(0.805) TCGA-VQ-A8PX-01 X 125298942 125298942 A C DCAF12L2 Silent p.A322A 0.24 TCGA-VQ-A8PX-01 X 128878000 128878000 A G XPNPEP2 Missense_Mutation p.T63A 0.10 tolerated(0.75) benign(0.002) TCGA-VQ-A8PX-01 X 1428408 1428408 G A CSF2RA 3'UTR 0.17 TCGA-VQ-A8PX-01 X 148564470 148564470 A G IDS Missense_Mutation p.I276T 0.16 deleterious(0) possibly_damaging(0.72) TCGA-VQ-A8PX-01 X 152482852 152482852 A G MAGEA1 Silent p.D53D 0.20 TCGA-VQ-A8PX-01 X 153297803 153297803 A C MECP2 Missense_Mutation p.S90A 0.25 tolerated(0.18) benign(0.259) TCGA-VQ-A8PX-01 X 18195798 18195798 G A BEND2 Silent p.C507C 0.28 TCGA-VQ-A8PX-01 X 19387315 19387315 A G MAP3K15 Silent p.P1141P 0.08 TCGA-VQ-A8PX-01 X 228263 228263 G A GTPBP6 Silent p.G87G 0.20 TCGA-VQ-A8PX-01 X 32482804 32482804 T C DMD Missense_Mutation p.T1059A 0.17 possibly_damaging(0.878) TCGA-VQ-A8PX-01 X 43603662 43603662 C T MAOA Missense_Mutation p.P496S 0.60 deleterious(0) probably_damaging(1) TCGA-VQ-A8PX-01 X 48792119 48792121 AGA - OTUD5 In_Frame_Del p.F258del 0.25 TCGA-VQ-A8PX-01 X 50121107 50121107 G A DGKK RNA 0.61 TCGA-VQ-A8PX-01 X 54841177 54841177 G T MAGED2 Missense_Mutation p.S452I 0.08 deleterious(0.01) probably_damaging(0.928) TCGA-VQ-A8PX-01 X 54987327 54987327 G A PFKFB1 Nonsense_Mutation p.R83* 0.26 TCGA-VQ-A8PX-01 X 55748704 55748704 G A RRAGB Missense_Mutation p.R71H 0.29 deleterious(0) benign(0.249) TCGA-VQ-A8PX-01 X 73045197 73045197 A G XIST RNA 0.22 TCGA-VQ-A8PX-01 X 73046080 73046080 T - XIST RNA 0.26 TCGA-VQ-A8PX-01 X 91133057 91133057 G A PCDH11X Silent p.T606T 0.51 TCGA-VQ-A8PX-01 X 9679720 9679720 G A TBL1X Silent p.K503K 0.21 TCGA-VQ-A8PX-01 Y 21883107 21883107 T C KDM5D Missense_Mutation p.K488E 0.73 deleterious(0) benign(0.309) TCGA-VQ-A8PY-01 10 104572878 104572878 C T WBP1L Silent p.I294I 0.09 TCGA-VQ-A8PY-01 10 105967453 105967453 G A WDR96 Missense_Mutation p.L289F 0.10 deleterious(0) possibly_damaging(0.603) TCGA-VQ-A8PY-01 11 1016248 1016248 T G MUC6 Missense_Mutation p.T2185P 0.56 benign(0.012) TCGA-VQ-A8PY-01 11 2593318 2593318 C T KCNQ1 Silent p.S253S 0.19 TCGA-VQ-A8PY-01 11 70333321 70333321 G A SHANK2 Missense_Mutation p.T1027M 0.10 deleterious(0) benign(0.134) TCGA-VQ-A8PY-01 11 93454552 93454552 G A KIAA1731 Missense_Mutation p.G1942S 0.40 tolerated(0.41) benign(0.034) TCGA-VQ-A8PY-01 12 112480978 112480978 C - NAA25 Frame_Shift_Del p.G763Dfs*12 0.27 TCGA-VQ-A8PY-01 12 121175689 121175689 C G ACADS Silent p.G174G 0.19 TCGA-VQ-A8PY-01 12 27951237 27951237 A G KLHL42 3'UTR 0.45 TCGA-VQ-A8PY-01 12 44338020 44338020 G T TMEM117 Missense_Mutation p.L95F 0.24 tolerated(0.3) benign(0.208) TCGA-VQ-A8PY-01 12 49239394 49239394 G A DDX23 Missense_Mutation p.R58C 0.23 deleterious_low_confidence(0) unknown(0) TCGA-VQ-A8PY-01 12 49691008 49691008 A G PRPH Silent p.R316R 0.06 TCGA-VQ-A8PY-01 12 51393180 51393180 G A SLC11A2 Silent p.G214G 0.18 TCGA-VQ-A8PY-01 12 52470919 52470919 G A C12orf44 Missense_Mutation p.G201D 0.23 tolerated(0.12) benign(0.109) TCGA-VQ-A8PY-01 12 76424860 76424861 - CC PHLDA1 Frame_Shift_Ins p.A221Gfs*18 0.22 TCGA-VQ-A8PY-01 12 95927018 95927018 C A USP44 Nonsense_Mutation p.E339* 0.15 TCGA-VQ-A8PY-01 13 103346734 103346734 C T METTL21C Missense_Mutation p.G39R 0.14 tolerated(0.42) benign(0.003) TCGA-VQ-A8PY-01 13 31035263 31035263 C A HMGB1 3'UTR 0.17 TCGA-VQ-A8PY-01 13 39263732 39263732 G A FREM2 Missense_Mutation p.E751K 0.16 tolerated(0.13) benign(0.087) TCGA-VQ-A8PY-01 14 105833576 105833576 C T PACS2 Silent p.G150G 0.07 TCGA-VQ-A8PY-01 14 50089059 50089059 T C MGAT2 Missense_Mutation p.L358P 0.13 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PY-01 14 72055850 72055850 A G SIPA1L1 Missense_Mutation p.I421V 0.19 tolerated(0.09) benign(0.016) TCGA-VQ-A8PY-01 15 101013181 101013181 C T CERS3 Missense_Mutation p.R229H 0.27 deleterious(0) probably_damaging(1) TCGA-VQ-A8PY-01 15 25336980 25336985 AATGAG - SNORD116-23 RNA 0.17 TCGA-VQ-A8PY-01 15 41476469 41476469 T C EXD1 Missense_Mutation p.E402G 0.19 deleterious_low_confidence(0) benign(0.035) TCGA-VQ-A8PY-01 15 54305343 54305343 G T UNC13C Missense_Mutation p.E81D 0.15 tolerated_low_confidence(0.56) benign(0.001) TCGA-VQ-A8PY-01 15 54305345 54305345 C T UNC13C Missense_Mutation p.A82V 0.15 tolerated_low_confidence(0.07) benign(0.001) TCGA-VQ-A8PY-01 15 54305353 54305353 G T UNC13C Nonsense_Mutation p.E85* 0.13 TCGA-VQ-A8PY-01 15 54306737 54306737 T C UNC13C Missense_Mutation p.L546P 0.11 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-VQ-A8PY-01 15 73615982 73615982 C T HCN4 Missense_Mutation p.G818S 0.21 tolerated_low_confidence(0.15) unknown(0) TCGA-VQ-A8PY-01 15 74631655 74631655 G T CYP11A1 Missense_Mutation p.L387I 0.18 deleterious(0.01) possibly_damaging(0.719) TCGA-VQ-A8PY-01 16 11272395 11272395 G A CLEC16A Missense_Mutation p.V1004I 0.28 deleterious_low_confidence(0.04) benign(0.004) TCGA-VQ-A8PY-01 16 30002225 30002225 G A TAOK2 3'Flank 0.28 TCGA-VQ-A8PY-01 16 70416750 70416750 C T ST3GAL2 Silent p.T279T 0.21 TCGA-VQ-A8PY-01 17 10258010 10258010 A G MYH13 Missense_Mutation p.L331P 0.23 deleterious(0) probably_damaging(1) TCGA-VQ-A8PY-01 17 21319068 21319068 C A KCNJ12 Silent p.I138I 0.05 TCGA-VQ-A8PY-01 17 34233504 34233504 G T AC015849.16 RNA 0.24 TCGA-VQ-A8PY-01 17 40315334 40315334 C T KCNH4 Silent p.E832E 0.09 TCGA-VQ-A8PY-01 17 67183994 67183994 T G ABCA10 Missense_Mutation p.I720L 0.11 tolerated(0.11) benign(0.005) TCGA-VQ-A8PY-01 17 7578479 7578479 G C TP53 Missense_Mutation p.P151A 0.27 deleterious(0.01) possibly_damaging(0.902) TCGA-VQ-A8PY-01 18 56587130 56587130 C A ZNF532 Silent p.T537T 0.08 TCGA-VQ-A8PY-01 18 580874 580874 G A CETN1 Missense_Mutation p.E156K 0.08 deleterious(0.04) probably_damaging(0.941) TCGA-VQ-A8PY-01 18 65180368 65180368 T C DSEL Missense_Mutation p.K503R 0.07 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PY-01 18 73000701 73000701 G A TSHZ1 3'UTR 0.46 TCGA-VQ-A8PY-01 19 15905665 15905665 G A OR10H5 Silent p.P269P 0.10 TCGA-VQ-A8PY-01 19 18241414 18241414 G A MAST3 Missense_Mutation p.R416H 0.18 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PY-01 19 37210230 37210230 A G ZNF567 Missense_Mutation p.K171E 0.06 tolerated(0.08) benign(0.008) TCGA-VQ-A8PY-01 1 111061444 111061444 C A KCNA10 5'UTR 0.21 TCGA-VQ-A8PY-01 1 115128209 115128209 C T DENND2C 3'UTR 0.09 TCGA-VQ-A8PY-01 1 152279972 152279972 C T FLG Missense_Mutation p.G2464R 0.09 probably_damaging(0.958) TCGA-VQ-A8PY-01 1 154155596 154155596 G A TPM3 Intron 0.23 TCGA-VQ-A8PY-01 1 161140198 161140198 G A PPOX Splice_Site p.X330_splice 0.25 TCGA-VQ-A8PY-01 1 212788405 212788405 G A ATF3 Silent p.V14V 0.26 TCGA-VQ-A8PY-01 1 215298093 215298093 G C KCNK2 Missense_Mutation p.G159R 0.27 deleterious(0) probably_damaging(1) TCGA-VQ-A8PY-01 1 216850528 216850528 T G ESRRG Missense_Mutation p.N126T 0.18 deleterious(0.03) possibly_damaging(0.566) TCGA-VQ-A8PY-01 1 240601472 240601472 C A FMN2 Missense_Mutation p.D1674E 0.22 benign(0.168) TCGA-VQ-A8PY-01 1 248202322 248202322 T C OR2L2 Silent p.Y251Y 0.25 TCGA-VQ-A8PY-01 1 248487850 248487850 G A OR2M7 Silent p.T7T 0.22 TCGA-VQ-A8PY-01 1 32374509 32374509 G A PTP4A2 Nonsense_Mutation p.R150* 0.24 TCGA-VQ-A8PY-01 1 34238305 34238305 G A CSMD2 Missense_Mutation p.R531W 0.35 tolerated(0.18) benign(0.002) TCGA-VQ-A8PY-01 1 43779613 43779613 C A TIE1 Missense_Mutation p.R795S 0.09 deleterious(0.03) benign(0.159) TCGA-VQ-A8PY-01 1 54474579 54474579 G A LDLRAD1 3'UTR 0.31 TCGA-VQ-A8PY-01 1 62740518 62740518 C T KANK4 Silent p.P86P 0.06 TCGA-VQ-A8PY-01 1 7861240 7861240 A G PER3 Silent p.E286E 0.09 TCGA-VQ-A8PY-01 20 1286056 1286056 C T SNPH Silent p.F281F 0.16 TCGA-VQ-A8PY-01 20 30659485 30659485 A C HCK Missense_Mutation p.K28T 0.22 deleterious(0.03) possibly_damaging(0.753) TCGA-VQ-A8PY-01 20 31395665 31395665 C T DNMT3B Nonsense_Mutation p.R840* 0.18 TCGA-VQ-A8PY-01 20 52779388 52779388 G A CYP24A1 Silent p.I286I 0.07 TCGA-VQ-A8PY-01 21 27852690 27852690 C T CYYR1 Missense_Mutation p.G79R 0.13 deleterious(0.05) probably_damaging(0.999) TCGA-VQ-A8PY-01 21 46067140 46067140 C A KRTAP10-11 Silent p.S255S 0.14 TCGA-VQ-A8PY-01 22 31685280 31685280 C T PIK3IP1 Intron 0.10 TCGA-VQ-A8PY-01 2 107074103 107074103 T C RGPD3 Missense_Mutation p.M58V 0.13 deleterious(0) benign(0) TCGA-VQ-A8PY-01 2 113147662 113147662 G A RGPD8 Missense_Mutation p.R954W 0.19 deleterious(0) benign(0.024) TCGA-VQ-A8PY-01 2 211301009 211301009 C T LANCL1 Silent p.G327G 0.14 TCGA-VQ-A8PY-01 2 218999633 218999633 G A CXCR2 Missense_Mutation p.A37T 0.31 tolerated(0.36) benign(0.003) TCGA-VQ-A8PY-01 2 219554587 219554587 T C STK36 Silent p.S522S 0.12 TCGA-VQ-A8PY-01 2 77745827 77745827 A C LRRTM4 Missense_Mutation p.F390V 0.18 tolerated(0.64) benign(0) TCGA-VQ-A8PY-01 2 86718077 86718077 G A KDM3A Missense_Mutation p.R1216Q 0.11 tolerated(0.61) probably_damaging(0.999) TCGA-VQ-A8PY-01 3 122002948 122002948 G A CASR Missense_Mutation p.R726H 0.07 tolerated(0.14) probably_damaging(0.999) TCGA-VQ-A8PY-01 3 134327671 134327671 A C KY Missense_Mutation p.F304V 0.12 deleterious(0) probably_damaging(0.997) TCGA-VQ-A8PY-01 3 146171895 146171895 T A PLSCR2 Missense_Mutation p.H199L 0.13 deleterious(0.02) possibly_damaging(0.786) TCGA-VQ-A8PY-01 3 194150813 194150813 G T ATP13A3 Missense_Mutation p.P922Q 0.06 deleterious(0) probably_damaging(0.95) TCGA-VQ-A8PY-01 3 195711147 195711147 C G SDHAP1 Intron 0.08 TCGA-VQ-A8PY-01 3 71821892 71821892 A C PROK2 Missense_Mutation p.C125G 0.32 deleterious(0) probably_damaging(1) TCGA-VQ-A8PY-01 3 89259287 89259287 A C EPHA3 Missense_Mutation p.D144A 0.03 deleterious(0.05) probably_damaging(0.997) TCGA-VQ-A8PY-01 4 146059375 146059375 A G OTUD4 Missense_Mutation p.V786A 0.17 deleterious(0.02) probably_damaging(0.998) TCGA-VQ-A8PY-01 4 16587565 16587565 A C LDB2 Missense_Mutation p.F199V 0.29 tolerated(0.5) benign(0.038) TCGA-VQ-A8PY-01 4 1725525 1725525 T G TACC3 Missense_Mutation p.L78R 0.14 deleterious(0) possibly_damaging(0.823) TCGA-VQ-A8PY-01 4 177041094 177041094 C T WDR17 Silent p.F152F 0.14 TCGA-VQ-A8PY-01 4 46736869 46736869 A G COX7B2 3'UTR 0.16 TCGA-VQ-A8PY-01 4 46930427 46930427 C A GABRA4 Missense_Mutation p.G494W 0.05 deleterious_low_confidence(0.01) probably_damaging(0.992) TCGA-VQ-A8PY-01 4 47625750 47625750 C T CORIN Missense_Mutation p.R793H 0.10 deleterious(0.03) possibly_damaging(0.868) TCGA-VQ-A8PY-01 4 80246387 80246387 G A NAA11 Silent p.S215S 0.13 TCGA-VQ-A8PY-01 4 83557911 83557911 C T SCD5 Nonsense_Mutation p.W212* 0.13 TCGA-VQ-A8PY-01 5 138715364 138715364 C T SLC23A1 Intron 0.26 TCGA-VQ-A8PY-01 5 140908063 140908063 G A DIAPH1 Silent p.L1035L 0.06 TCGA-VQ-A8PY-01 5 178045670 178045683 TGTGATAATGTCTA - CLK4 Frame_Shift_Del p.Y89* 0.15 TCGA-VQ-A8PY-01 5 64824302 64824302 C A CENPK Missense_Mutation p.D192Y 0.09 deleterious(0) possibly_damaging(0.646) TCGA-VQ-A8PY-01 5 76714217 76714217 C A PDE8B Missense_Mutation p.A692D 0.24 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PY-01 5 82836584 82836584 G T VCAN Nonsense_Mutation p.E2588* 0.10 TCGA-VQ-A8PY-01 6 152485424 152485424 C T SYNE1 Silent p.Q7888Q 0.15 TCGA-VQ-A8PY-01 6 76532560 76532560 A G MYO6 Missense_Mutation p.E60G 0.05 deleterious(0) unknown(0) TCGA-VQ-A8PY-01 6 8421056 8421056 G A SLC35B3 Missense_Mutation p.R194C 0.16 deleterious(0) probably_damaging(0.946) TCGA-VQ-A8PY-01 7 5430216 5430216 G T TNRC18 Missense_Mutation p.H129Q 0.09 benign(0.439) TCGA-VQ-A8PY-01 7 66270343 66270343 G A KCTD7 Missense_Mutation p.R346Q 0.06 deleterious(0.01) possibly_damaging(0.782) TCGA-VQ-A8PY-01 7 87196199 87196199 T C ABCB1 Missense_Mutation p.I144M 0.08 deleterious(0.01) benign(0.272) TCGA-VQ-A8PY-01 8 132999852 132999852 A C EFR3A Missense_Mutation p.K656N 0.10 tolerated(0.48) benign(0.005) TCGA-VQ-A8PY-01 8 35606149 35606149 C A UNC5D Missense_Mutation p.A624E 0.22 deleterious(0) probably_damaging(1) TCGA-VQ-A8PY-01 9 100617328 100617328 G T FOXE1 3'UTR 0.16 TCGA-VQ-A8PY-01 9 125273282 125273282 C A OR1J2 Missense_Mutation p.L68I 0.14 deleterious_low_confidence(0.01) benign(0.082) TCGA-VQ-A8PY-01 9 98684694 98684694 A C ERCC6L2 Missense_Mutation p.K480N 0.20 tolerated(0.11) benign(0.002) TCGA-VQ-A8PY-01 X 103498919 103498919 C T ESX1 Missense_Mutation p.R141H 0.13 deleterious(0) probably_damaging(0.954) TCGA-VQ-A8PY-01 X 129053445 129053445 G T UTP14A Missense_Mutation p.E244D 0.17 deleterious(0.01) possibly_damaging(0.882) TCGA-VQ-A8PY-01 X 13338010 13338010 G C ATXN3L Missense_Mutation p.A15G 0.46 deleterious(0) possibly_damaging(0.839) TCGA-VQ-A8PY-01 X 153069194 153069194 G A PDZD4 Nonsense_Mutation p.R642* 0.31 TCGA-VQ-A8PY-01 X 153132926 153132926 A G L1CAM Silent p.S674S 0.12 TCGA-VQ-A8PY-01 X 36089964 36089964 G T CHDC2 Missense_Mutation p.K22N 0.48 tolerated(0.11) possibly_damaging(0.738) TCGA-VQ-A8PY-01 X 49061762 49061762 C T CACNA1F Silent p.Q1923Q 0.15 TCGA-VQ-A8PY-01 X 67943936 67943937 - CA STARD8 Frame_Shift_Ins p.I1059Tfs*69 0.16 TCGA-VQ-A8PZ-01 10 61832784 61832784 T C ANK3 Missense_Mutation p.K2619E 0.13 benign(0.023) TCGA-VQ-A8PZ-01 11 103814349 103814349 C T PDGFD Silent p.T201T 0.09 TCGA-VQ-A8PZ-01 11 115085449 115085449 G A CADM1 Silent p.A291A 0.12 TCGA-VQ-A8PZ-01 11 55735723 55735723 G A OR10AG1 Missense_Mutation p.L73F 0.18 deleterious(0.01) possibly_damaging(0.767) TCGA-VQ-A8PZ-01 11 62571018 62571018 C T NXF1 Missense_Mutation p.R81H 0.13 tolerated(0.06) benign(0.009) TCGA-VQ-A8PZ-01 11 65412438 65412438 C T SIPA1 Missense_Mutation p.R333C 0.10 deleterious(0.02) probably_damaging(0.999) TCGA-VQ-A8PZ-01 11 88301035 88301035 C T GRM5 Missense_Mutation p.D606N 0.18 tolerated(0.2) probably_damaging(1) TCGA-VQ-A8PZ-01 11 94040776 94040776 G A FOLR4 Missense_Mutation p.R217H 0.17 tolerated(0.09) benign(0.021) TCGA-VQ-A8PZ-01 12 105557986 105557986 A G KIAA1033 Silent p.R1085R 0.12 TCGA-VQ-A8PZ-01 12 117627075 117627075 C T FBXO21 Missense_Mutation p.R111Q 0.15 tolerated(0.17) benign(0.018) TCGA-VQ-A8PZ-01 12 119978525 119978525 G A CCDC60 3'UTR 0.08 TCGA-VQ-A8PZ-01 12 12038879 12038879 A G ETV6 Missense_Mutation p.Y391C 0.09 deleterious(0) probably_damaging(1) TCGA-VQ-A8PZ-01 12 2997246 2997246 G A RHNO1 Missense_Mutation p.R113Q 0.10 tolerated(0.27) benign(0.039) TCGA-VQ-A8PZ-01 12 5021591 5021591 G A KCNA1 Silent p.A349A 0.17 TCGA-VQ-A8PZ-01 13 96665730 96665730 C A UGGT2 Missense_Mutation p.R164I 0.17 deleterious(0.01) possibly_damaging(0.905) TCGA-VQ-A8PZ-01 14 60977881 60977881 G A SIX6 Missense_Mutation p.V218I 0.29 tolerated(0.23) benign(0) TCGA-VQ-A8PZ-01 14 68191286 68191286 G A RDH12 Silent p.T55T 0.07 TCGA-VQ-A8PZ-01 15 64966795 64966795 G A ZNF609 Missense_Mutation p.S581N 0.20 tolerated(0.38) benign(0.064) TCGA-VQ-A8PZ-01 15 78894002 78894002 C T CHRNA3 Missense_Mutation p.V328M 0.22 deleterious(0.01) benign(0.266) TCGA-VQ-A8PZ-01 15 78921806 78921806 T C CHRNB4 Missense_Mutation p.I281V 0.23 tolerated(0.05) probably_damaging(0.986) TCGA-VQ-A8PZ-01 16 3929935 3929935 A C CREBBP 5'UTR 0.29 TCGA-VQ-A8PZ-01 16 69375579 69375579 C T NIP7 3'UTR 0.14 TCGA-VQ-A8PZ-01 17 27061792 27061792 G A NEK8 Missense_Mutation p.G86S 0.23 deleterious(0) probably_damaging(1) TCGA-VQ-A8PZ-01 17 37879658 37879658 G A ERBB2 Missense_Mutation p.R678Q 0.24 tolerated(0.19) benign(0.022) TCGA-VQ-A8PZ-01 17 38508601 38508601 C G RARA Missense_Mutation p.R217G 0.45 tolerated(0.07) possibly_damaging(0.766) TCGA-VQ-A8PZ-01 17 38954595 38954595 G A KRT28 Silent p.N194N 0.41 TCGA-VQ-A8PZ-01 17 41108248 41108248 G A AARSD1 Silent p.T212T 0.08 TCGA-VQ-A8PZ-01 17 41833001 41833001 G A SOST Silent p.N117N 0.31 TCGA-VQ-A8PZ-01 17 43474120 43474120 T C ARHGAP27 Missense_Mutation p.D322G 0.21 deleterious(0.03) benign(0.354) TCGA-VQ-A8PZ-01 17 46804357 46804357 C T HOXB13 Missense_Mutation p.R217H 0.15 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PZ-01 17 76134463 76134463 C T TMC8 Missense_Mutation p.R523W 0.27 deleterious(0) probably_damaging(0.975) TCGA-VQ-A8PZ-01 17 80674648 80674648 G C FN3KRP Missense_Mutation p.R6T 0.22 deleterious(0) benign(0.312) TCGA-VQ-A8PZ-01 18 33696636 33696636 C T SLC39A6 Splice_Site p.X489_splice 0.11 TCGA-VQ-A8PZ-01 19 15996786 15996786 G A CYP4F2 Missense_Mutation p.R355W 0.09 deleterious(0.01) possibly_damaging(0.711) TCGA-VQ-A8PZ-01 19 19372279 19372279 G A HAPLN4 Missense_Mutation p.R33W 0.15 deleterious(0) probably_damaging(0.965) TCGA-VQ-A8PZ-01 19 2229890 2229890 C T DOT1L 3'UTR 0.22 TCGA-VQ-A8PZ-01 19 31768530 31768530 G A TSHZ3 Silent p.S723S 0.10 TCGA-VQ-A8PZ-01 19 39805515 39805515 C A LRFN1 Silent p.S154S 0.32 TCGA-VQ-A8PZ-01 19 44933212 44933212 G A ZNF229 Missense_Mutation p.R582W 0.18 tolerated(0.07) benign(0.017) TCGA-VQ-A8PZ-01 19 51330241 51330241 G A KLK15 Missense_Mutation p.A125V 0.22 tolerated(0.94) benign(0) TCGA-VQ-A8PZ-01 19 53912155 53912155 C T ZNF765 Silent p.F449F 0.23 TCGA-VQ-A8PZ-01 19 54080645 54080645 G A ZNF331 Silent p.G277G 0.27 TCGA-VQ-A8PZ-01 19 7987134 7987134 C T SNAPC2 Missense_Mutation p.P196L 0.09 deleterious(0.04) benign(0.281) TCGA-VQ-A8PZ-01 1 109380259 109380259 G T AKNAD1 Missense_Mutation p.S483R 0.15 tolerated(0.32) benign(0.012) TCGA-VQ-A8PZ-01 1 11134330 11134330 T - EXOSC10 Frame_Shift_Del p.A681Pfs*93 0.18 TCGA-VQ-A8PZ-01 1 111435095 111435095 G A CD53 Missense_Mutation p.M64I 0.11 deleterious(0) benign(0.378) TCGA-VQ-A8PZ-01 1 114248690 114248690 C T PHTF1 Missense_Mutation p.R498H 0.07 tolerated(0.55) benign(0.001) TCGA-VQ-A8PZ-01 1 150531446 150531446 C T ADAMTSL4 Silent p.A856A 0.33 TCGA-VQ-A8PZ-01 1 150936495 150936495 G T SETDB1 Missense_Mutation p.V1232F 0.12 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PZ-01 1 152538266 152538266 C A LCE3E 3'UTR 0.19 TCGA-VQ-A8PZ-01 1 158735779 158735779 C A OR6N1 Missense_Mutation p.A232S 0.14 tolerated(0.08) benign(0.039) TCGA-VQ-A8PZ-01 1 226044415 226044415 C G TMEM63A Missense_Mutation p.M503I 0.07 deleterious(0.01) benign(0.345) TCGA-VQ-A8PZ-01 1 228547912 228547912 C T OBSCN Intron 0.21 TCGA-VQ-A8PZ-01 1 238050729 238050729 G C ZP4 Missense_Mutation p.T229R 0.11 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8PZ-01 1 41101672 41101672 G A RIMS3 Missense_Mutation p.A92V 0.28 deleterious_low_confidence(0) probably_damaging(0.928) TCGA-VQ-A8PZ-01 1 82417755 82417755 G A LPHN2 Missense_Mutation p.D571N 0.12 tolerated(0.06) benign(0.169) TCGA-VQ-A8PZ-01 20 31017759 31017759 C T ASXL1 Silent p.S207S 0.22 TCGA-VQ-A8PZ-01 20 39788783 39788783 C T PLCG1 Missense_Mutation p.R168C 0.22 deleterious(0) possibly_damaging(0.459) TCGA-VQ-A8PZ-01 20 43738564 43738564 C T WFDC5 3'UTR 0.16 TCGA-VQ-A8PZ-01 20 48098552 48098552 G A KCNB1 Missense_Mutation p.R156W 0.06 deleterious(0.01) probably_damaging(0.957) TCGA-VQ-A8PZ-01 22 26168357 26168357 C T MYO18B Silent p.N583N 0.10 TCGA-VQ-A8PZ-01 2 128412452 128412452 A C LIMS2 Missense_Mutation p.C88G 0.19 deleterious(0) benign(0.392) TCGA-VQ-A8PZ-01 2 128480884 128480884 G A WDR33 Nonsense_Mutation p.R412* 0.07 TCGA-VQ-A8PZ-01 2 179593075 179593075 T G TTN Missense_Mutation p.K6492N 0.18 TCGA-VQ-A8PZ-01 2 179613743 179613743 C T TTN Intron 0.09 TCGA-VQ-A8PZ-01 2 207631492 207631492 C T FASTKD2 Silent p.F25F 0.10 TCGA-VQ-A8PZ-01 2 218750500 218750500 G A TNS1 Silent p.I236I 0.15 TCGA-VQ-A8PZ-01 2 220115694 220115694 G A TUBA4A Missense_Mutation p.R243C 0.07 deleterious_low_confidence(0) probably_damaging(0.921) TCGA-VQ-A8PZ-01 2 27157512 27157512 A G DPYSL5 Missense_Mutation p.Q286R 0.08 tolerated(0.09) benign(0.129) TCGA-VQ-A8PZ-01 2 65305016 65305016 T C CEP68 Silent p.D674D 0.17 TCGA-VQ-A8PZ-01 3 42569500 42569500 G A VIPR1 Missense_Mutation p.R174Q 0.27 deleterious(0) possibly_damaging(0.861) TCGA-VQ-A8PZ-01 3 46722845 46722845 C T ALS2CL Missense_Mutation p.G443R 0.08 deleterious(0) probably_damaging(0.99) TCGA-VQ-A8PZ-01 3 49405956 49405956 G T RHOA Missense_Mutation p.A61D 0.38 deleterious(0) probably_damaging(0.998) TCGA-VQ-A8PZ-01 3 51680477 51680477 C T RAD54L2 Silent p.P1002P 0.14 TCGA-VQ-A8PZ-01 3 53779672 53779672 G A CACNA1D Missense_Mutation p.V1030M 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A8PZ-01 4 122853894 122853894 C T TRPC3 Silent p.A173A 0.13 TCGA-VQ-A8PZ-01 4 154709592 154709592 G A SFRP2 Silent p.F132F 0.09 TCGA-VQ-A8PZ-01 4 188924757 188924757 G A ZFP42 Missense_Mutation p.V266M 0.16 deleterious(0.03) probably_damaging(0.998) TCGA-VQ-A8PZ-01 4 3344679 3344679 C T RGS12 Missense_Mutation p.R633W 0.17 tolerated(0.2) possibly_damaging(0.895) TCGA-VQ-A8PZ-01 4 72897644 72897644 C T NPFFR2 Missense_Mutation p.A9V 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.499) TCGA-VQ-A8PZ-01 4 96163622 96163622 C T UNC5C Missense_Mutation p.V356I 0.13 tolerated(0.19) benign(0.322) TCGA-VQ-A8PZ-01 5 140257255 140257255 C T PCDHA12 Missense_Mutation p.A733V 0.11 tolerated_low_confidence(0.06) benign(0.004) TCGA-VQ-A8PZ-01 5 140627058 140627058 C A PCDHB15 Missense_Mutation p.H638N 0.25 deleterious_low_confidence(0) possibly_damaging(0.905) TCGA-VQ-A8PZ-01 5 161495071 161495071 A T GABRG2 Missense_Mutation p.K22N 0.09 tolerated_low_confidence(0.09) benign(0.211) TCGA-VQ-A8PZ-01 6 102376469 102376469 G A GRIK2 Missense_Mutation p.G683R 0.22 deleterious(0) probably_damaging(1) TCGA-VQ-A8PZ-01 6 143095187 143095187 C T HIVEP2 Missense_Mutation p.S230N 0.10 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8PZ-01 6 163235257 163235257 G T PACRG Missense_Mutation p.G79C 0.09 deleterious(0) probably_damaging(0.999) TCGA-VQ-A8PZ-01 6 28269597 28269597 G A PGBD1 Missense_Mutation p.E656K 0.14 tolerated(0.22) possibly_damaging(0.747) TCGA-VQ-A8PZ-01 6 29323192 29323192 G A OR5V1 Missense_Mutation p.R261W 0.13 deleterious(0.01) probably_damaging(1) TCGA-VQ-A8PZ-01 7 11076172 11076172 G A PHF14 Missense_Mutation p.R577H 0.08 deleterious(0) probably_damaging(0.996) TCGA-VQ-A8PZ-01 7 142627256 142627256 C T TRPV5 Silent p.A82A 0.05 TCGA-VQ-A8PZ-01 7 2978365 2978365 C A CARD11 Missense_Mutation p.R322M 0.12 deleterious(0) possibly_damaging(0.481) TCGA-VQ-A8PZ-01 8 124696876 124696876 T A ANXA13 Missense_Mutation p.I310F 0.07 deleterious(0) probably_damaging(0.995) TCGA-VQ-A8PZ-01 8 142487938 142487938 G A MROH5 3'UTR 0.25 TCGA-VQ-A8PZ-01 8 3432478 3432478 C A CSMD1 Missense_Mutation p.D445Y 0.07 probably_damaging(0.992) TCGA-VQ-A8PZ-01 8 54708216 54708216 T C ATP6V1H Silent p.A287A 0.15 TCGA-VQ-A8PZ-01 9 101068510 101068510 C T GABBR2 Missense_Mutation p.A708T 0.15 deleterious(0.04) benign(0.153) TCGA-VQ-A8PZ-01 9 116920 116920 C T FOXD4 Silent p.A400A 0.13 TCGA-VQ-A8PZ-01 X 118604346 118604346 G A SLC25A5 Silent p.P203P 0.06 TCGA-VQ-A8PZ-01 X 119513384 119513384 A C ATP1B4 Missense_Mutation p.Q323H 0.18 tolerated(0.14) probably_damaging(0.927) TCGA-VQ-A8PZ-01 X 122460037 122460037 C T GRIA3 Silent p.V223V 0.14 TCGA-VQ-A8PZ-01 X 125299587 125299587 G A DCAF12L2 Silent p.N107N 0.19 TCGA-VQ-A8PZ-01 X 140984520 140984520 G A MAGEC3 Intron 0.13 TCGA-VQ-A8PZ-01 X 149101872 149101872 T G CXorf40B Missense_Mutation p.K74T 0.06 tolerated(0.33) benign(0.022) TCGA-VQ-A8PZ-01 X 153581564 153581564 A G FLNA Missense_Mutation p.F2011L 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A8PZ-01 X 65478787 65478787 C G HEPH Missense_Mutation p.T1055S 0.20 tolerated(0.19) probably_damaging(0.969) TCGA-VQ-A8PZ-01 X 77378729 77378729 T C PGK1 Missense_Mutation p.I265T 0.08 tolerated(0.13) benign(0.158) TCGA-VQ-A8PZ-01 X 77378730 77378730 T A PGK1 Silent p.I265I 0.10 TCGA-VQ-A91A-01 10 131762048 131762048 C T EBF3 5'UTR 0.39 TCGA-VQ-A91A-01 10 37508239 37508239 C A ANKRD30A Missense_Mutation p.P1144H 0.09 deleterious(0.02) probably_damaging(0.953) TCGA-VQ-A91A-01 10 61832205 61832206 - T ANK3 Frame_Shift_Ins p.Q2812Tfs*4 0.22 TCGA-VQ-A91A-01 10 72358782 72358782 C T PRF1 Missense_Mutation p.R232H 0.08 deleterious(0.04) probably_damaging(0.991) TCGA-VQ-A91A-01 10 93768694 93768694 G C BTAF1 Missense_Mutation p.D1308H 0.11 deleterious(0) probably_damaging(0.996) TCGA-VQ-A91A-01 10 98803254 98803254 G A SLIT1 Missense_Mutation p.R624C 0.40 deleterious(0.02) probably_damaging(0.93) TCGA-VQ-A91A-01 11 100998981 100998981 C T PGR Missense_Mutation p.R274H 0.53 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-VQ-A91A-01 11 113295305 113295305 G A DRD2 Silent p.N23N 0.44 TCGA-VQ-A91A-01 11 117869504 117869504 G A IL10RA Silent p.P295P 0.17 TCGA-VQ-A91A-01 11 36484155 36484155 C T PRR5L Missense_Mutation p.P326S 0.52 tolerated(0.15) benign(0.005) TCGA-VQ-A91A-01 11 43428763 43428763 A - TTC17 Frame_Shift_Del p.K613Sfs*20 0.21 TCGA-VQ-A91A-01 11 55433051 55433051 C T OR4C6 Missense_Mutation p.R137W 0.35 tolerated_low_confidence(0.08) benign(0.008) TCGA-VQ-A91A-01 11 56000301 56000301 A C OR5T2 Missense_Mutation p.L121V 0.23 deleterious(0.03) possibly_damaging(0.45) TCGA-VQ-A91A-01 11 5665014 5665014 C A TRIM34 3'UTR 0.17 TCGA-VQ-A91A-01 11 72145146 72145147 - A CLPB Frame_Shift_Ins p.H125Sfs*68 0.12 TCGA-VQ-A91A-01 11 73688016 73688016 G A UCP2 Silent p.A128A 0.15 TCGA-VQ-A91A-01 11 94759345 94759345 T G KDM4E Silent p.T208T 0.16 TCGA-VQ-A91A-01 12 120794713 120794713 C T MSI1 Missense_Mutation p.G215D 0.07 deleterious(0) benign(0.006) TCGA-VQ-A91A-01 12 129558701 129558701 T G TMEM132D Missense_Mutation p.N1007H 0.11 deleterious(0.04) possibly_damaging(0.601) TCGA-VQ-A91A-01 12 14834388 14834388 C T GUCY2C Missense_Mutation p.S212N 0.26 tolerated(0.05) benign(0.102) TCGA-VQ-A91A-01 12 1904518 1904518 G A CACNA2D4 Missense_Mutation p.R1086C 0.09 deleterious(0) possibly_damaging(0.776) TCGA-VQ-A91A-01 12 20787872 20787872 A G PDE3A Missense_Mutation p.N628S 0.13 tolerated(0.44) possibly_damaging(0.907) TCGA-VQ-A91A-01 12 32900031 32900031 T C YARS2 3'UTR 0.15 TCGA-VQ-A91A-01 12 39087548 39087548 G C CPNE8 Missense_Mutation p.Q352E 0.14 deleterious(0.02) benign(0.174) TCGA-VQ-A91A-01 12 49420108 49420108 C T KMT2D Missense_Mutation p.R5214H 0.19 unknown(0) TCGA-VQ-A91A-01 12 49425776 49425776 G A KMT2D Missense_Mutation p.R4238C 0.20 unknown(0) TCGA-VQ-A91A-01 12 56230835 56230835 G C MMP19 Silent p.T504T 0.12 TCGA-VQ-A91A-01 12 56231050 56231050 T C MMP19 Missense_Mutation p.M433V 0.07 tolerated(0.57) benign(0.003) TCGA-VQ-A91A-01 12 58165935 58165935 C T METTL1 5'UTR 0.22 TCGA-VQ-A91A-01 12 9303252 9303252 A T PZP Missense_Mutation p.Y1458N 0.16 deleterious(0) probably_damaging(0.998) TCGA-VQ-A91A-01 13 110831696 110831696 C - COL4A1 Frame_Shift_Del p.E756Rfs*46 0.27 TCGA-VQ-A91A-01 13 35683500 35683500 C T NBEA Missense_Mutation p.S585F 0.10 tolerated(0.21) benign(0.212) TCGA-VQ-A91A-01 13 42769030 42769030 C T DGKH Missense_Mutation p.A682V 0.34 tolerated(0.37) benign(0.002) TCGA-VQ-A91A-01 13 50134083 50134083 G T RCBTB1 Missense_Mutation p.H139N 0.17 deleterious(0) probably_damaging(0.98) TCGA-VQ-A91A-01 14 105419745 105419745 C A AHNAK2 Missense_Mutation p.K681N 0.17 probably_damaging(0.999) TCGA-VQ-A91A-01 14 20296136 20296136 T G OR4N2 Missense_Mutation p.F177V 0.24 deleterious(0) probably_damaging(0.981) TCGA-VQ-A91A-01 14 22265838 22265858 GGATGCAACTATTCCTATGGT - TRAV8-1 In_Frame_Del p.C42_G48del 0.13 TCGA-VQ-A91A-01 14 55518517 55518517 G T MAPK1IP1L 5'UTR 0.14 TCGA-VQ-A91A-01 14 57749699 57749699 A G AP5M1 Missense_Mutation p.E379G 0.20 tolerated(0.05) possibly_damaging(0.524) TCGA-VQ-A91A-01 14 86088364 86088364 A C FLRT2 Missense_Mutation p.N169T 0.12 deleterious(0) probably_damaging(1) TCGA-VQ-A91A-01 15 31357239 31357239 G A TRPM1 Intron 0.16 TCGA-VQ-A91A-01 15 48628287 48628287 G A DUT Missense_Mutation p.A186T 0.16 deleterious(0.02) probably_damaging(0.999) TCGA-VQ-A91A-01 15 55972341 55972341 C T PRTG Missense_Mutation p.R295K 0.11 tolerated(1) benign(0.002) TCGA-VQ-A91A-01 15 57535669 57535669 G C TCF12 Splice_Site p.X346_splice 0.18 TCGA-VQ-A91A-01 15 75688756 75688756 C T SIN3A Missense_Mutation p.E646K 0.29 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91A-01 15 91769648 91769648 G T SV2B Missense_Mutation p.G52V 0.49 deleterious(0) probably_damaging(1) TCGA-VQ-A91A-01 16 20480859 20480859 C A ACSM2A Silent p.I138I 0.17 TCGA-VQ-A91A-01 16 27476110 27476110 C T GTF3C1 Silent p.A1801A 0.28 TCGA-VQ-A91A-01 16 29856096 29856096 C T MVP Silent p.D639D 0.16 TCGA-VQ-A91A-01 16 54319241 54319241 G T IRX3 Silent p.R184R 0.15 TCGA-VQ-A91A-01 16 75146247 75146247 A G LDHD 3'UTR 0.23 TCGA-VQ-A91A-01 17 27825387 27825390 AATC - TAOK1 Frame_Shift_Del p.Q352Pfs*29 0.31 TCGA-VQ-A91A-01 17 39969529 39969529 A G FKBP10 Silent p.S81S 0.38 TCGA-VQ-A91A-01 17 43907822 43907822 C T CRHR1 Missense_Mutation p.H228Y 0.10 tolerated(1) possibly_damaging(0.745) TCGA-VQ-A91A-01 17 76456078 76456078 G T DNAH17 Missense_Mutation p.N3133K 0.29 benign(0.255) TCGA-VQ-A91A-01 17 76476849 76476849 T C DNAH17 Missense_Mutation p.T2543A 0.31 benign(0.021) TCGA-VQ-A91A-01 17 7945789 7945789 T G ALOX15B Missense_Mutation p.F184L 0.13 tolerated(0.29) benign(0.002) TCGA-VQ-A91A-01 18 50683813 50683813 G A DCC Missense_Mutation p.R450H 0.43 deleterious(0.01) probably_damaging(0.981) TCGA-VQ-A91A-01 19 11531460 11531460 C T CCDC151 3'UTR 0.17 TCGA-VQ-A91A-01 19 19379469 19379469 G T TM6SF2 Silent p.P193P 0.15 TCGA-VQ-A91A-01 19 36046221 36046221 C T ATP4A Missense_Mutation p.V725I 0.49 deleterious(0) possibly_damaging(0.695) TCGA-VQ-A91A-01 19 37382921 37382921 G T ZNF829 Missense_Mutation p.H339N 0.19 deleterious(0) probably_damaging(0.992) TCGA-VQ-A91A-01 19 3979344 3979344 C T EEF2 Missense_Mutation p.A566T 0.14 deleterious(0.04) benign(0.081) TCGA-VQ-A91A-01 19 47823350 47823350 G A C5AR1 Missense_Mutation p.G106R 0.54 tolerated(0.45) benign(0.001) TCGA-VQ-A91A-01 19 51830445 51830445 A G IGLON5 Missense_Mutation p.D253G 0.55 tolerated(0.25) benign(0.139) TCGA-VQ-A91A-01 19 55085337 55085337 G T LILRA2 5'UTR 0.36 TCGA-VQ-A91A-01 19 6694526 6694526 C T C3 Missense_Mutation p.A1024T 0.30 tolerated(0.08) possibly_damaging(0.834) TCGA-VQ-A91A-01 19 8160894 8160894 G A FBN3 Silent p.C1870C 0.16 TCGA-VQ-A91A-01 19 9073300 9073300 C A MUC16 Missense_Mutation p.A4716S 0.29 unknown(0) TCGA-VQ-A91A-01 1 100620651 100620651 T C LRRC39 Silent p.K256K 0.20 TCGA-VQ-A91A-01 1 152284691 152284691 T G FLG Missense_Mutation p.S891R 0.14 probably_damaging(0.995) TCGA-VQ-A91A-01 1 155152212 155152212 G C TRIM46 Missense_Mutation p.V464L 0.17 tolerated(1) benign(0.142) TCGA-VQ-A91A-01 1 155317652 155317652 C T ASH1L Missense_Mutation p.R2533H 0.12 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-VQ-A91A-01 1 169102041 169102043 GAA - NME7 In_Frame_Del p.F371del 0.44 TCGA-VQ-A91A-01 1 175299212 175299212 G A TNR Missense_Mutation p.A1264V 0.10 deleterious(0) possibly_damaging(0.813) TCGA-VQ-A91A-01 1 177030302 177030302 G A ASTN1 Missense_Mutation p.A128V 0.42 tolerated_low_confidence(0.06) benign(0.033) TCGA-VQ-A91A-01 1 182638800 182638800 C T RGS8 Intron 0.07 TCGA-VQ-A91A-01 1 184706762 184706762 A G EDEM3 Silent p.V96V 0.33 TCGA-VQ-A91A-01 1 192150511 192150511 A C RGS18 Missense_Mutation p.S125R 0.11 tolerated(0.06) possibly_damaging(0.682) TCGA-VQ-A91A-01 1 19557423 19557423 C T EMC1 Missense_Mutation p.R660Q 0.33 tolerated(0.76) benign(0.007) TCGA-VQ-A91A-01 1 197074230 197074231 - T ASPM Frame_Shift_Ins p.I1384Nfs*8 0.19 TCGA-VQ-A91A-01 1 220752712 220752712 G T MARK1 Missense_Mutation p.G23V 0.24 deleterious(0.01) possibly_damaging(0.46) TCGA-VQ-A91A-01 1 226923273 226923273 G A ITPKB Silent p.P629P 0.06 TCGA-VQ-A91A-01 1 23233222 23233222 C A EPHB2 Nonsense_Mutation p.C637* 0.14 TCGA-VQ-A91A-01 1 236195943 236195944 - G NID1 Frame_Shift_Ins p.Q432Pfs*23 0.24 TCGA-VQ-A91A-01 1 74701092 74701092 T C TNNI3K Intron 0.18 TCGA-VQ-A91A-01 1 90470820 90470820 T A ZNF326 Intron 0.45 TCGA-VQ-A91A-01 20 400093 400093 C T RBCK1 Missense_Mutation p.A188V 0.27 tolerated(0.43) benign(0.01) TCGA-VQ-A91A-01 20 5169717 5169717 C T CDS2 Missense_Mutation p.T329M 0.17 deleterious(0) probably_damaging(0.954) TCGA-VQ-A91A-01 20 54972814 54972814 C A CSTF1 Missense_Mutation p.L188M 0.07 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91A-01 21 35742851 35742851 A G KCNE2 Missense_Mutation p.N25S 0.42 tolerated(0.32) benign(0.016) TCGA-VQ-A91A-01 21 46841295 46841295 G A COL18A1-AS1 RNA 0.21 TCGA-VQ-A91A-01 22 22277447 22277447 C A PPM1F 3'UTR 0.32 TCGA-VQ-A91A-01 2 103090284 103090285 - T SLC9A4 Frame_Shift_Ins p.C23Lfs*3 0.13 TCGA-VQ-A91A-01 2 1094057 1094057 G A SNTG2 Missense_Mutation p.V96I 0.24 tolerated(0.4) probably_damaging(0.961) TCGA-VQ-A91A-01 2 133540975 133540975 C G NCKAP5 Missense_Mutation p.A1137P 0.28 tolerated(0.43) benign(0.004) TCGA-VQ-A91A-01 2 144764816 144764816 G T GTDC1 Missense_Mutation p.P270T 0.13 tolerated_low_confidence(0.27) benign(0.002) TCGA-VQ-A91A-01 2 179425789 179425789 A G TTN Missense_Mutation p.V28357A 0.27 TCGA-VQ-A91A-01 2 179442063 179442063 G T TTN Missense_Mutation p.P23000Q 0.20 TCGA-VQ-A91A-01 2 179479223 179479223 C G TTN Missense_Mutation p.A16340P 0.16 TCGA-VQ-A91A-01 2 237402488 237402488 T C IQCA1 Missense_Mutation p.K127E 0.28 deleterious(0.02) benign(0.103) TCGA-VQ-A91A-01 2 238283081 238283081 G A COL6A3 Missense_Mutation p.P1218L 0.16 benign(0.195) TCGA-VQ-A91A-01 2 62067589 62067589 C G FAM161A Missense_Mutation p.E184Q 0.26 deleterious(0.01) possibly_damaging(0.543) TCGA-VQ-A91A-01 2 75929290 75929290 A T GCFC2 Intron 0.16 TCGA-VQ-A91A-01 3 113145104 113145104 G C WDR52 Missense_Mutation p.P92A 0.17 tolerated(0.15) benign(0.021) TCGA-VQ-A91A-01 3 134369828 134369828 C T KY 5'UTR 0.25 TCGA-VQ-A91A-01 3 134670597 134670597 C T EPHB1 Missense_Mutation p.R170W 0.13 deleterious(0.02) probably_damaging(0.968) TCGA-VQ-A91A-01 3 153840379 153840379 C T ARHGEF26 Missense_Mutation p.R200W 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.513) TCGA-VQ-A91A-01 3 32578574 32578574 T C DYNC1LI1 Missense_Mutation p.E254G 0.25 deleterious(0) probably_damaging(0.994) TCGA-VQ-A91A-01 3 45714206 45714206 T C LIMD1 Missense_Mutation p.Y556H 0.25 deleterious(0) probably_damaging(0.997) TCGA-VQ-A91A-01 3 73450101 73450101 T G PDZRN3 Missense_Mutation p.E409A 0.08 deleterious(0.03) benign(0.006) TCGA-VQ-A91A-01 4 78695758 78695758 A G CNOT6L Silent p.N80N 0.23 TCGA-VQ-A91A-01 4 8207325 8207325 C T SH3TC1 Intron 0.24 TCGA-VQ-A91A-01 5 134023944 134023944 G T SEC24A Nonsense_Mutation p.E560* 0.36 TCGA-VQ-A91A-01 5 136834171 136834171 G A SPOCK1 Missense_Mutation p.A26V 0.47 tolerated(0.64) benign(0.005) TCGA-VQ-A91A-01 5 13883037 13883037 C T DNAH5 Silent p.Q1050Q 0.13 TCGA-VQ-A91A-01 5 140222955 140222955 G A PCDHA8 Silent p.S683S 0.35 TCGA-VQ-A91A-01 5 140248963 140248963 G A PCDHA11 Missense_Mutation p.R92H 0.14 deleterious_low_confidence(0) probably_damaging(0.913) TCGA-VQ-A91A-01 5 140755670 140755670 G A PCDHGA6 Missense_Mutation p.D674N 0.15 deleterious_low_confidence(0.02) benign(0.176) TCGA-VQ-A91A-01 5 140789096 140789096 G A PCDHGB6 Missense_Mutation p.A443T 0.26 tolerated(0.55) benign(0.013) TCGA-VQ-A91A-01 5 140855830 140855830 C T PCDHGC3 Silent p.N49N 0.14 TCGA-VQ-A91A-01 5 149245741 149245741 C T PDE6A Missense_Mutation p.V784I 0.10 deleterious(0.02) probably_damaging(0.989) TCGA-VQ-A91A-01 5 15936924 15936924 C T FBXL7 Missense_Mutation p.R369C 0.12 deleterious(0.01) probably_damaging(0.994) TCGA-VQ-A91A-01 5 169506008 169506008 C T DOCK2 Missense_Mutation p.T1675M 0.23 tolerated(0.18) benign(0.064) TCGA-VQ-A91A-01 5 1798717 1798717 G A MRPL36 3'UTR 0.26 TCGA-VQ-A91A-01 5 23526925 23526925 G A PRDM9 Silent p.G576G 0.28 TCGA-VQ-A91A-01 5 32712290 32712290 C T NPR3 Silent p.C136C 0.23 TCGA-VQ-A91A-01 5 33937938 33937938 C A RXFP3 Missense_Mutation p.L365M 0.12 tolerated(0.23) benign(0.232) TCGA-VQ-A91A-01 5 41850275 41850275 G T OXCT1 Missense_Mutation p.L141I 0.37 tolerated(0.07) possibly_damaging(0.453) TCGA-VQ-A91A-01 5 75991425 75991425 G A IQGAP2 Silent p.T1380T 0.18 TCGA-VQ-A91A-01 5 79032309 79032309 T A CMYA5 Missense_Mutation p.I2574N 0.42 benign(0.039) TCGA-VQ-A91A-01 6 107956459 107956459 C T SOBP Missense_Mutation p.P804L 0.17 tolerated(0.07) benign(0.095) TCGA-VQ-A91A-01 6 114378791 114378791 G T HS3ST5 Missense_Mutation p.T224K 0.28 tolerated(0.53) benign(0.033) TCGA-VQ-A91A-01 6 128841456 128841456 C G PTPRK Missense_Mutation p.L16F 0.31 tolerated_low_confidence(0.14) unknown(0) TCGA-VQ-A91A-01 6 129777511 129777511 G T LAMA2 Missense_Mutation p.A2247S 0.17 tolerated(0.06) probably_damaging(0.969) TCGA-VQ-A91A-01 6 150157350 150157350 C A LRP11 Missense_Mutation p.G375C 0.13 tolerated(0.07) possibly_damaging(0.613) TCGA-VQ-A91A-01 6 151687920 151687920 C T ZBTB2 Missense_Mutation p.R94Q 0.15 deleterious(0.02) probably_damaging(0.992) TCGA-VQ-A91A-01 6 27835003 27835023 GTGCCCTTGGTCTGCACCAGG - HIST1H1B In_Frame_Del p.L96_T102del 0.11 TCGA-VQ-A91A-01 6 32812250 32812250 T A PSMB8 5'Flank 0.21 TCGA-VQ-A91A-01 6 38652208 38652208 C G GLO1 Missense_Mutation p.E84Q 0.22 deleterious(0.01) benign(0.001) TCGA-VQ-A91A-01 6 51774162 51774162 A C PKHD1 Missense_Mutation p.L2201V 0.17 tolerated(0.25) possibly_damaging(0.541) TCGA-VQ-A91A-01 6 52849351 52849351 G A GSTA4 Missense_Mutation p.H109Y 0.25 tolerated(0.89) benign(0.005) TCGA-VQ-A91A-01 6 55638897 55638897 C G BMP5 Missense_Mutation p.R326P 0.17 tolerated(0.37) benign(0.089) TCGA-VQ-A91A-01 7 108128388 108128388 C A PNPLA8 Missense_Mutation p.V565L 0.21 deleterious(0.05) benign(0.122) TCGA-VQ-A91A-01 7 114268847 114268847 T C FOXP2 Intron 0.41 TCGA-VQ-A91A-01 7 136700844 136700844 C T CHRM2 Missense_Mutation p.T411I 0.28 deleterious(0) possibly_damaging(0.673) TCGA-VQ-A91A-01 7 141952378 141952378 G A PRSS58 Nonsense_Mutation p.Q164* 0.24 TCGA-VQ-A91A-01 7 4273010 4273010 C A SDK1 Missense_Mutation p.A1984E 0.09 deleterious(0.01) benign(0.29) TCGA-VQ-A91A-01 7 44155761 44155761 C T POLD2 Silent p.T324T 0.14 TCGA-VQ-A91A-01 7 44556368 44556368 G T NPC1L1 Missense_Mutation p.D1178E 0.40 deleterious(0) probably_damaging(1) TCGA-VQ-A91A-01 7 70886090 70886090 A G WBSCR17 Missense_Mutation p.R321G 0.21 deleterious(0) possibly_damaging(0.5) TCGA-VQ-A91A-01 7 87037374 87037374 G A ABCB4 Silent p.Y1086Y 0.12 TCGA-VQ-A91A-01 8 100123388 100123388 C T VPS13B Missense_Mutation p.R215W 0.23 deleterious(0) possibly_damaging(0.876) TCGA-VQ-A91A-01 8 113651050 113651050 G A CSMD3 Missense_Mutation p.A1134V 0.15 deleterious(0.03) probably_damaging(0.976) TCGA-VQ-A91A-01 8 114449095 114449095 G T CSMD3 5'UTR 0.17 TCGA-VQ-A91A-01 8 131792757 131792757 A C ADCY8 Missense_Mutation p.L1212R 0.11 deleterious(0.01) benign(0.003) TCGA-VQ-A91A-01 8 53852552 53852552 C A NPBWR1 Missense_Mutation p.L29M 0.15 tolerated(0.23) benign(0.036) TCGA-VQ-A91A-01 8 6479020 6479020 A G MCPH1 Missense_Mutation p.T754A 0.20 tolerated(0.12) benign(0.006) TCGA-VQ-A91A-01 9 139617742 139617742 G A FAM69B Missense_Mutation p.R271Q 0.18 deleterious(0) probably_damaging(0.987) TCGA-VQ-A91A-01 9 2073576 2073576 G T SMARCA2 Missense_Mutation p.A630S 0.22 possibly_damaging(0.694) TCGA-VQ-A91A-01 9 79952229 79952229 T - VPS13A Frame_Shift_Del p.F2052Lfs*5 0.24 TCGA-VQ-A91A-01 9 86894894 86894894 G A SLC28A3 Silent p.I608I 0.29 TCGA-VQ-A91A-01 9 97380095 97380095 G A FBP1 Silent p.I127I 0.13 TCGA-VQ-A91A-01 X 106843627 106843627 G A FRMPD3 Missense_Mutation p.M819I 0.39 deleterious(0.01) benign(0.001) TCGA-VQ-A91A-01 X 107978798 107978798 G A IRS4 Silent p.T259T 0.33 TCGA-VQ-A91A-01 X 111090433 111090433 G C TRPC5 Missense_Mutation p.Q537E 0.40 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91A-01 X 120009030 120009030 G C CT47B1 Missense_Mutation p.N165K 0.17 tolerated(0.35) benign(0.075) TCGA-VQ-A91A-01 X 153533551 153533551 C T TKTL1 Intron 0.40 TCGA-VQ-A91A-01 X 73065296 73065296 G A XIST RNA 0.56 TCGA-VQ-A91D-01 10 101458417 101458417 G T ENTPD7 Missense_Mutation p.W379C 0.32 deleterious(0.01) probably_damaging(0.971) TCGA-VQ-A91D-01 10 102239713 102239713 G A WNT8B Missense_Mutation p.R62H 0.38 deleterious(0) probably_damaging(0.983) TCGA-VQ-A91D-01 10 102798400 102798400 C T SFXN3 Missense_Mutation p.R262C 0.28 deleterious(0.05) benign(0.095) TCGA-VQ-A91D-01 10 103587462 103587462 A T KCNIP2 Missense_Mutation p.I265N 0.34 deleterious(0) probably_damaging(0.956) TCGA-VQ-A91D-01 10 103920343 103920343 G A NOLC1 Missense_Mutation p.G412S 0.44 tolerated_low_confidence(1) benign(0) TCGA-VQ-A91D-01 10 104241646 104241646 T G ACTR1A Missense_Mutation p.D312A 0.22 deleterious(0.03) possibly_damaging(0.817) TCGA-VQ-A91D-01 10 104678648 104678648 C - CNNM2 Frame_Shift_Del p.A139Rfs*105 0.23 TCGA-VQ-A91D-01 10 104679834 104679834 G A CNNM2 Missense_Mutation p.A533T 0.31 tolerated(0.11) benign(0.066) TCGA-VQ-A91D-01 10 104853777 104853777 T C NT5C2 Missense_Mutation p.I314V 0.35 tolerated(0.45) benign(0.011) TCGA-VQ-A91D-01 10 105154073 105154073 G A USMG5 5'UTR 0.26 TCGA-VQ-A91D-01 10 105215129 105215129 G T CALHM1 Missense_Mutation p.P311T 0.21 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91D-01 10 105361664 105361664 T C SH3PXD2A Missense_Mutation p.N1076S 0.27 tolerated(0.05) probably_damaging(0.995) TCGA-VQ-A91D-01 10 11060019 11060019 C - CELF2 5'UTR 0.29 TCGA-VQ-A91D-01 10 112839093 112839093 G A ADRA2A Missense_Mutation p.D447N 0.31 deleterious(0) probably_damaging(0.982) TCGA-VQ-A91D-01 10 112839159 112839159 C T ADRA2A 3'UTR 0.25 TCGA-VQ-A91D-01 10 114919706 114919706 C T TCF7L2 Intron 0.25 TCGA-VQ-A91D-01 10 114925330 114925330 G A TCF7L2 Missense_Mutation p.V470I 0.34 tolerated(1) benign(0.026) TCGA-VQ-A91D-01 10 115423118 115423118 A G NRAP Missense_Mutation p.C54R 0.20 tolerated(0.07) probably_damaging(1) TCGA-VQ-A91D-01 10 116887435 116887435 T - ATRNL1 Frame_Shift_Del p.F192Lfs*8 0.25 TCGA-VQ-A91D-01 10 118305623 118305623 C A PNLIP Missense_Mutation p.L7I 0.36 tolerated(1) benign(0.008) TCGA-VQ-A91D-01 10 118439248 118439248 A G HSPA12A Missense_Mutation p.V351A 0.26 tolerated(0.05) probably_damaging(0.92) TCGA-VQ-A91D-01 10 119798498 119798498 A G RAB11FIP2 Missense_Mutation p.I417T 0.10 tolerated(0.51) benign(0.022) TCGA-VQ-A91D-01 10 1230958 1230958 C T ADARB2 Missense_Mutation p.R629H 0.20 deleterious(0.01) probably_damaging(0.992) TCGA-VQ-A91D-01 10 123274723 123274723 G A FGFR2 Nonsense_Mutation p.R400* 0.27 TCGA-VQ-A91D-01 10 123903148 123903148 C A TACC2 Missense_Mutation p.P1921T 0.14 possibly_damaging(0.711) TCGA-VQ-A91D-01 10 126691994 126691994 G A CTBP2 Silent p.R582R 0.31 TCGA-VQ-A91D-01 10 127436197 127436200 TACT - EDRF1 Frame_Shift_Del p.Y971Lfs*29 0.26 TCGA-VQ-A91D-01 10 128147637 128147637 C T C10orf90 Silent p.K623K 0.21 TCGA-VQ-A91D-01 10 128776231 128776231 G A DOCK1 Silent p.T50T 0.31 TCGA-VQ-A91D-01 10 128973618 128973618 G A FAM196A Nonsense_Mutation p.R348* 0.37 TCGA-VQ-A91D-01 10 129172386 129172388 GTT - DOCK1 In_Frame_Del p.V1175del 0.29 TCGA-VQ-A91D-01 10 129901497 129901497 C T MKI67 Silent p.T2869T 0.34 TCGA-VQ-A91D-01 10 129905045 129905045 C T MKI67 Missense_Mutation p.A1687T 0.27 tolerated(0.2) possibly_damaging(0.802) TCGA-VQ-A91D-01 10 129907064 129907064 G A MKI67 Missense_Mutation p.P1014S 0.29 tolerated(0.63) benign(0.082) TCGA-VQ-A91D-01 10 13154533 13154533 A G OPTN Silent p.L150L 0.33 TCGA-VQ-A91D-01 10 131565253 131565253 C T MGMT Nonsense_Mutation p.R237* 0.35 TCGA-VQ-A91D-01 10 131666085 131666085 C T EBF3 Silent p.G282G 0.38 TCGA-VQ-A91D-01 10 132891313 132891313 C T TCERG1L 3'UTR 0.21 TCGA-VQ-A91D-01 10 134188696 134188696 T - LRRC27 Frame_Shift_Del p.F516Lfs*22 0.32 TCGA-VQ-A91D-01 10 134218990 134218990 C T PWWP2B Missense_Mutation p.P329L 0.23 tolerated(0.73) benign(0.09) TCGA-VQ-A91D-01 10 134912177 134912177 G A GPR123 Silent p.T55T 0.38 TCGA-VQ-A91D-01 10 15008483 15008483 G A MEIG1 Missense_Mutation p.V6I 0.20 tolerated(0.45) benign(0.001) TCGA-VQ-A91D-01 10 15154860 15154860 A C NMT2 Missense_Mutation p.Y425D 0.32 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 10 15256516 15256516 C T FAM171A1 Silent p.T357T 0.36 TCGA-VQ-A91D-01 10 16996472 16996472 C T CUBN Missense_Mutation p.V1591I 0.23 tolerated(0.28) benign(0.004) TCGA-VQ-A91D-01 10 17641374 17641374 C T PTPLA Missense_Mutation p.A174T 0.27 deleterious(0) benign(0.183) TCGA-VQ-A91D-01 10 18169530 18169530 C A MRC1 Silent p.T932T 0.23 TCGA-VQ-A91D-01 10 18242431 18242431 C T SLC39A12 Missense_Mutation p.R76W 0.20 deleterious(0) possibly_damaging(0.582) TCGA-VQ-A91D-01 10 21875259 21875259 A G MLLT10 Missense_Mutation p.K93E 0.30 deleterious(0.01) benign(0.012) TCGA-VQ-A91D-01 10 22830740 22830740 G T PIP4K2A Nonsense_Mutation p.C343* 0.41 TCGA-VQ-A91D-01 10 24909887 24909887 T - ARHGAP21 Frame_Shift_Del p.T313Qfs*17 0.22 TCGA-VQ-A91D-01 10 25887190 25887190 T C GPR158 Missense_Mutation p.S879P 0.33 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91D-01 10 27382281 27382282 - T ANKRD26 Frame_Shift_Ins p.N176Kfs*4 0.25 TCGA-VQ-A91D-01 10 28413937 28413937 A G MPP7 Splice_Site p.X177_splice 0.12 TCGA-VQ-A91D-01 10 31809687 31809687 T A ZEB1 Missense_Mutation p.I476N 0.51 deleterious(0) probably_damaging(0.998) TCGA-VQ-A91D-01 10 3189878 3189878 G T PITRM1 Silent p.A708A 0.39 TCGA-VQ-A91D-01 10 32740823 32740823 G A CCDC7 Missense_Mutation p.G85R 0.31 tolerated(1) benign(0.001) TCGA-VQ-A91D-01 10 35456558 35456559 - T CREM Intron 0.27 TCGA-VQ-A91D-01 10 35929111 35929111 A T FZD8 Missense_Mutation p.I416N 0.11 deleterious(0) probably_damaging(0.992) TCGA-VQ-A91D-01 10 37419219 37419219 G A ANKRD30A Silent p.T85T 0.23 TCGA-VQ-A91D-01 10 44053247 44053247 C T ZNF239 Missense_Mutation p.R94H 0.26 tolerated(0.55) benign(0) TCGA-VQ-A91D-01 10 46967543 46967543 C T SYT15 Silent p.S178S 0.15 TCGA-VQ-A91D-01 10 48428731 48428731 G A GDF10 Silent p.F385F 0.30 TCGA-VQ-A91D-01 10 4875572 4875572 G A AKR1E2 Missense_Mutation p.V80M 0.27 deleterious(0.01) probably_damaging(1) TCGA-VQ-A91D-01 10 4882014 4882014 T G AKR1E2 Missense_Mutation p.S226A 0.23 tolerated(0.11) possibly_damaging(0.851) TCGA-VQ-A91D-01 10 50819662 50819662 C A SLC18A3 Silent p.A292A 0.41 TCGA-VQ-A91D-01 10 50859941 50859941 A C CHAT Missense_Mutation p.N508T 0.10 deleterious(0.01) probably_damaging(0.915) TCGA-VQ-A91D-01 10 50953988 50953988 G T OGDHL Silent p.S444S 0.26 TCGA-VQ-A91D-01 10 51580940 51580940 G A NCOA4 Missense_Mutation p.A131T 0.27 tolerated(0.11) probably_damaging(1) TCGA-VQ-A91D-01 10 56287577 56287577 C T PCDH15 Missense_Mutation p.R51Q 0.33 tolerated_low_confidence(0.34) benign(0.206) TCGA-VQ-A91D-01 10 5963495 5963495 C T FBXO18 Missense_Mutation p.T813M 0.36 deleterious(0) probably_damaging(0.997) TCGA-VQ-A91D-01 10 61833296 61833296 T C ANK3 Missense_Mutation p.Y2448C 0.28 probably_damaging(0.99) TCGA-VQ-A91D-01 10 6274971 6274971 G A PFKFB3 3'UTR 0.37 TCGA-VQ-A91D-01 10 64574099 64574099 G T EGR2 Missense_Mutation p.P100H 0.28 deleterious(0.04) probably_damaging(0.933) TCGA-VQ-A91D-01 10 69908182 69908182 C A MYPN Silent p.A401A 0.28 TCGA-VQ-A91D-01 10 69957164 69957164 C T MYPN Nonsense_Mutation p.R1072* 0.31 TCGA-VQ-A91D-01 10 69966647 69966647 G A MYPN Silent p.R1260R 0.39 TCGA-VQ-A91D-01 10 70412277 70412277 G A TET1 Missense_Mutation p.A1463T 0.29 deleterious(0.03) possibly_damaging(0.606) TCGA-VQ-A91D-01 10 71868815 71868815 G A H2AFY2 Missense_Mutation p.A269T 0.09 tolerated(0.09) benign(0.381) TCGA-VQ-A91D-01 10 72358646 72358646 C A PRF1 Missense_Mutation p.K277N 0.29 tolerated(0.13) benign(0.025) TCGA-VQ-A91D-01 10 73462338 73462338 G A CDH23 Missense_Mutation p.A466T 0.27 tolerated(0.25) benign(0.249) TCGA-VQ-A91D-01 10 73921319 73921319 C G ASCC1 Missense_Mutation p.Q229H 0.34 tolerated(0.06) benign(0.081) TCGA-VQ-A91D-01 10 74035021 74035021 G T DDIT4 3'UTR 0.44 TCGA-VQ-A91D-01 10 74114683 74114683 G - DNAJB12 Frame_Shift_Del p.S26Pfs*55 0.24 TCGA-VQ-A91D-01 10 75302575 75302575 G T USP54 Silent p.S186S 0.33 TCGA-VQ-A91D-01 10 75451802 75451802 T C AGAP5 Missense_Mutation p.H132R 0.13 deleterious_low_confidence(0) benign(0.027) TCGA-VQ-A91D-01 10 75563406 75563406 C - NDST2 Frame_Shift_Del p.A690Lfs*36 0.26 TCGA-VQ-A91D-01 10 7618571 7618571 A G ITIH5 Missense_Mutation p.L608P 0.39 deleterious(0) probably_damaging(0.997) TCGA-VQ-A91D-01 10 7841769 7841769 G A ATP5C1 Missense_Mutation p.E155K 0.11 deleterious(0.01) benign(0.385) TCGA-VQ-A91D-01 10 79593732 79593732 C T DLG5 Missense_Mutation p.R563H 0.38 deleterious(0) probably_damaging(0.996) TCGA-VQ-A91D-01 10 79781918 79781918 G A POLR3A Silent p.N290N 0.33 TCGA-VQ-A91D-01 10 81272426 81272426 C T EIF5AL1 Silent p.F7F 0.20 TCGA-VQ-A91D-01 10 85970889 85970889 G A CDHR1 Missense_Mutation p.A485T 0.42 tolerated(0.2) benign(0.053) TCGA-VQ-A91D-01 10 87482860 87482860 C T GRID1 Missense_Mutation p.V633M 0.35 tolerated(0.68) probably_damaging(0.921) TCGA-VQ-A91D-01 10 88259603 88259603 T C WAPAL Missense_Mutation p.D466G 0.28 deleterious_low_confidence(0.04) benign(0.085) TCGA-VQ-A91D-01 10 88469718 88469718 A C LDB3 Missense_Mutation p.H386P 0.19 tolerated(0.17) benign(0.027) TCGA-VQ-A91D-01 10 88649983 88649983 T C BMPR1A Splice_Site p.X77_splice 0.34 TCGA-VQ-A91D-01 10 88679186 88679186 T C BMPR1A Missense_Mutation p.C376R 0.31 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 10 88703630 88703630 A G MMRN2 Missense_Mutation p.V304A 0.34 tolerated(0.1) benign(0.156) TCGA-VQ-A91D-01 10 88768936 88768936 C T RP11-96C23.10 3'Flank 0.07 TCGA-VQ-A91D-01 10 91163033 91163033 A - IFIT1 Frame_Shift_Del p.K336Sfs*9 0.23 TCGA-VQ-A91D-01 10 92616929 92616929 G A HTR7 Missense_Mutation p.T167M 0.36 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 10 92656100 92656100 C T RPP30 Silent p.D216D 0.32 TCGA-VQ-A91D-01 10 92675373 92675373 G A ANKRD1 Missense_Mutation p.A259V 0.29 deleterious(0) probably_damaging(0.933) TCGA-VQ-A91D-01 10 93619363 93619363 G A TNKS2 Missense_Mutation p.G1080E 0.24 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 10 94603 94603 G A TUBB8 Missense_Mutation p.R77C 0.09 deleterious_low_confidence(0.03) benign(0.185) TCGA-VQ-A91D-01 10 95276744 95276744 A - CEP55 Frame_Shift_Del p.D247Ifs*9 0.26 TCGA-VQ-A91D-01 10 95658454 95658454 C T SLC35G1 Missense_Mutation p.A102V 0.20 deleterious(0.01) possibly_damaging(0.507) TCGA-VQ-A91D-01 10 96025571 96025571 T - PLCE1 Frame_Shift_Del p.F1380Lfs*43 0.22 TCGA-VQ-A91D-01 10 97402901 97402901 C T ALDH18A1 Missense_Mutation p.V51I 0.29 tolerated(0.36) benign(0.001) TCGA-VQ-A91D-01 10 97919393 97919393 T - ZNF518A RNA 0.29 TCGA-VQ-A91D-01 10 97951715 97951715 T - BLNK 3'UTR 0.27 TCGA-VQ-A91D-01 10 98319445 98319445 A G TM9SF3 Missense_Mutation p.Y211H 0.11 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91D-01 10 98416613 98416613 G A PIK3AP1 Missense_Mutation p.P170L 0.28 deleterious(0.03) benign(0.002) TCGA-VQ-A91D-01 10 99211883 99211883 A G ZDHHC16 Missense_Mutation p.I94V 0.36 tolerated(1) benign(0.001) TCGA-VQ-A91D-01 10 99358557 99358557 C T HOGA1 Silent p.G79G 0.15 TCGA-VQ-A91D-01 11 100998884 100998884 C G PGR Silent p.V306V 0.38 TCGA-VQ-A91D-01 11 1019478 1019478 G A MUC6 Missense_Mutation p.T1276M 0.35 unknown(0) TCGA-VQ-A91D-01 11 102195890 102195890 C T BIRC3 Missense_Mutation p.P217L 0.32 deleterious(0.01) benign(0.44) TCGA-VQ-A91D-01 11 102319550 102319551 - T TMEM123 Frame_Shift_Ins p.N50Kfs*12 0.28 TCGA-VQ-A91D-01 11 1024040 1024040 C T MUC6 Missense_Mutation p.D1097N 0.17 unknown(0) TCGA-VQ-A91D-01 11 102820925 102820925 A G MMP13 Silent p.H277H 0.32 TCGA-VQ-A91D-01 11 10472572 10472572 G A AMPD3 Missense_Mutation p.A2T 0.31 deleterious_low_confidence(0.05) benign(0.006) TCGA-VQ-A91D-01 11 105924492 105924492 A T KBTBD3 Missense_Mutation p.N308K 0.20 tolerated(0.91) benign(0.017) TCGA-VQ-A91D-01 11 10626052 10626052 C T MRVI1 Missense_Mutation p.S548N 0.29 tolerated(0.25) probably_damaging(0.999) TCGA-VQ-A91D-01 11 108143301 108143301 G A ATM Missense_Mutation p.M1040I 0.31 tolerated(0.38) benign(0.001) TCGA-VQ-A91D-01 11 108205807 108205807 G A ATM Missense_Mutation p.D2708N 0.28 deleterious(0.03) probably_damaging(0.953) TCGA-VQ-A91D-01 11 108380812 108380812 G A EXPH5 Nonsense_Mutation p.R1808* 0.35 TCGA-VQ-A91D-01 11 1087568 1087568 G A MUC2 Missense_Mutation p.A1107T 0.37 probably_damaging(0.993) TCGA-VQ-A91D-01 11 110450603 110450603 A G ARHGAP20 Missense_Mutation p.W1023R 0.08 tolerated(0.18) benign(0.003) TCGA-VQ-A91D-01 11 110462786 110462786 G A ARHGAP20 Missense_Mutation p.S353L 0.36 deleterious(0) probably_damaging(0.998) TCGA-VQ-A91D-01 11 111630580 111630583 CTGT - PPP2R1B Frame_Shift_Del p.D211Vfs*2 0.40 TCGA-VQ-A91D-01 11 111779691 111779691 C T CRYAB Missense_Mutation p.D109N 0.36 deleterious(0) probably_damaging(0.996) TCGA-VQ-A91D-01 11 11470359 11470359 G A GALNT18 Silent p.Y120Y 0.22 TCGA-VQ-A91D-01 11 115049409 115049409 G T CADM1 Missense_Mutation p.L389M 0.21 deleterious(0) probably_damaging(0.993) TCGA-VQ-A91D-01 11 117395685 117395685 G A DSCAML1 Missense_Mutation p.R318C 0.58 deleterious(0.02) probably_damaging(0.988) TCGA-VQ-A91D-01 11 118081348 118081348 T C AMICA1 Missense_Mutation p.D93G 0.08 deleterious(0.03) possibly_damaging(0.625) TCGA-VQ-A91D-01 11 118362558 118362558 A - KMT2A Frame_Shift_Del p.E1642Sfs*6 0.25 TCGA-VQ-A91D-01 11 118486902 118486902 C T PHLDB1 Missense_Mutation p.R111W 0.32 deleterious(0.02) benign(0.339) TCGA-VQ-A91D-01 11 118772973 118772974 - G BCL9L Frame_Shift_Ins p.G495Wfs*22 0.25 TCGA-VQ-A91D-01 11 118773423 118773423 G A BCL9L Silent p.S343S 0.33 TCGA-VQ-A91D-01 11 118828842 118828842 C T UPK2 Missense_Mutation p.R152C 0.29 tolerated(0.12) probably_damaging(0.984) TCGA-VQ-A91D-01 11 118916331 118916331 G A HYOU1 Missense_Mutation p.R992W 0.32 deleterious_low_confidence(0) benign(0.339) TCGA-VQ-A91D-01 11 119027677 119027677 A G ABCG4 Missense_Mutation p.S341G 0.32 tolerated(0.27) benign(0) TCGA-VQ-A91D-01 11 119050740 119050740 G A NLRX1 Silent p.L670L 0.44 TCGA-VQ-A91D-01 11 119212313 119212313 A G MFRP Missense_Mutation p.F562S 0.31 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 11 11987457 11987457 G A DKK3 Silent p.D243D 0.24 TCGA-VQ-A91D-01 11 121033013 121033013 G A TECTA Missense_Mutation p.A1736T 0.34 deleterious(0.02) benign(0.387) TCGA-VQ-A91D-01 11 12225908 12225908 G A MICAL2 Missense_Mutation p.V126M 0.26 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 11 124621449 124621449 G A VSIG2 Missense_Mutation p.T30I 0.35 tolerated(0.2) benign(0.011) TCGA-VQ-A91D-01 11 1246923 1246923 C A MUC5B Missense_Mutation p.P28H 0.44 unknown(0) TCGA-VQ-A91D-01 11 124756679 124756679 G - ROBO4 Frame_Shift_Del p.T826Pfs*48 0.25 TCGA-VQ-A91D-01 11 124951794 124951794 C T SLC37A2 Missense_Mutation p.R293W 0.09 deleterious(0.02) benign(0.02) TCGA-VQ-A91D-01 11 125765937 125765937 A C PUS3 Missense_Mutation p.S81R 0.34 deleterious(0.03) benign(0.205) TCGA-VQ-A91D-01 11 126142873 126142873 G A FOXRED1 Missense_Mutation p.A106T 0.30 deleterious(0) possibly_damaging(0.868) TCGA-VQ-A91D-01 11 1262370 1262370 C T MUC5B Silent p.Y1420Y 0.41 TCGA-VQ-A91D-01 11 126276313 126276313 G A ST3GAL4 Intron 0.32 TCGA-VQ-A91D-01 11 126301279 126301279 C - KIRREL3 Intron 0.31 TCGA-VQ-A91D-01 11 1263042 1263042 G A MUC5B Silent p.P1644P 0.43 TCGA-VQ-A91D-01 11 1267496 1267496 C T MUC5B Missense_Mutation p.P3129L 0.36 unknown(0) TCGA-VQ-A91D-01 11 129739589 129739589 C T NFRKB Missense_Mutation p.A1136T 0.35 tolerated_low_confidence(0.43) benign(0.293) TCGA-VQ-A91D-01 11 129993613 129993613 C T APLP2 Silent p.C343C 0.25 TCGA-VQ-A91D-01 11 130286065 130286065 G A ADAMTS8 Silent p.G419G 0.33 TCGA-VQ-A91D-01 11 130749596 130749596 T C SNX19 Silent p.V923V 0.35 TCGA-VQ-A91D-01 11 134062684 134062684 G A NCAPD3 Nonsense_Mutation p.Q649* 0.08 TCGA-VQ-A91D-01 11 134239721 134239721 A T GLB1L2 Missense_Mutation p.E350D 0.07 deleterious(0.01) probably_damaging(1) TCGA-VQ-A91D-01 11 14504655 14504655 C T COPB1 Missense_Mutation p.D294N 0.27 deleterious(0.01) probably_damaging(1) TCGA-VQ-A91D-01 11 14515223 14515223 T G COPB1 Missense_Mutation p.R152S 0.24 deleterious(0) probably_damaging(0.989) TCGA-VQ-A91D-01 11 14520392 14520392 T - COPB1 Frame_Shift_Del p.N28Mfs*3 0.29 TCGA-VQ-A91D-01 11 15257176 15257176 T C INSC Missense_Mutation p.V447A 0.08 tolerated(0.48) benign(0.013) TCGA-VQ-A91D-01 11 17190949 17190949 T - PIK3C2A Frame_Shift_Del p.T114Hfs*10 0.25 TCGA-VQ-A91D-01 11 17414565 17414565 G A ABCC8 Silent p.F1573F 0.29 TCGA-VQ-A91D-01 11 18332341 18332341 C T HPS5 Missense_Mutation p.D142N 0.13 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 11 18418442 18418442 C - LDHA Frame_Shift_Del p.Q49Rfs*21 0.32 TCGA-VQ-A91D-01 11 18421093 18421093 A G LDHA Missense_Mutation p.K110R 0.21 deleterious(0.04) benign(0.201) TCGA-VQ-A91D-01 11 18503314 18503314 C G TSG101 Missense_Mutation p.E316Q 0.09 deleterious(0.01) possibly_damaging(0.785) TCGA-VQ-A91D-01 11 18587940 18587940 C A UEVLD Missense_Mutation p.E149D 0.33 tolerated(0.22) probably_damaging(0.992) TCGA-VQ-A91D-01 11 18636367 18636367 G - SPTY2D1 Frame_Shift_Del p.P485Rfs*12 0.31 TCGA-VQ-A91D-01 11 18723337 18723337 C T TMEM86A Silent p.A168A 0.33 TCGA-VQ-A91D-01 11 18737146 18737146 C A IGSF22 Missense_Mutation p.G455V 0.35 deleterious(0) probably_damaging(0.971) TCGA-VQ-A91D-01 11 19955323 19955323 G A NAV2 Silent p.T534T 0.31 TCGA-VQ-A91D-01 11 20622811 20622811 C T SLC6A5 Missense_Mutation p.P47L 0.33 deleterious_low_confidence(0.03) benign(0.017) TCGA-VQ-A91D-01 11 20658776 20658776 G A SLC6A5 Missense_Mutation p.R599H 0.41 tolerated(0.07) probably_damaging(0.987) TCGA-VQ-A91D-01 11 2170479 2170479 A C INS-IGF2 Missense_Mutation p.I95S 0.16 deleterious_low_confidence(0) possibly_damaging(0.702) TCGA-VQ-A91D-01 11 22647372 22647372 C T FANCF 5'UTR 0.33 TCGA-VQ-A91D-01 11 22747932 22747932 G A GAS2 Missense_Mutation p.R121Q 0.37 deleterious(0) probably_damaging(0.969) TCGA-VQ-A91D-01 11 2424459 2424459 C G TSSC4 Missense_Mutation p.S199C 0.42 deleterious(0) benign(0.326) TCGA-VQ-A91D-01 11 2436570 2436570 G T TRPM5 Silent p.R420R 0.35 TCGA-VQ-A91D-01 11 2441529 2441529 G - TRPM5 Frame_Shift_Del p.P191Rfs*7 0.16 TCGA-VQ-A91D-01 11 30953321 30953321 G A DCDC1 Missense_Mutation p.T965M 0.28 tolerated(0.17) benign(0) TCGA-VQ-A91D-01 11 3114885 3114885 G A OSBPL5 Silent p.D606D 0.41 TCGA-VQ-A91D-01 11 3125532 3125532 G A OSBPL5 Missense_Mutation p.R379W 0.30 deleterious(0.01) benign(0.12) TCGA-VQ-A91D-01 11 314210 314210 C - IFITM1 Frame_Shift_Del p.S16Afs*9 0.26 TCGA-VQ-A91D-01 11 33050184 33050184 C T DEPDC7 Missense_Mutation p.R210C 0.36 deleterious(0) probably_damaging(0.997) TCGA-VQ-A91D-01 11 33127404 33127404 A - CSTF3 Intron 0.35 TCGA-VQ-A91D-01 11 33363198 33363198 G A HIPK3 Silent p.Q621Q 0.32 TCGA-VQ-A91D-01 11 33564571 33564571 G - KIAA1549L Frame_Shift_Del p.A192Rfs*77 0.23 TCGA-VQ-A91D-01 11 3380920 3380920 A T ZNF195 Missense_Mutation p.C440S 0.10 deleterious(0) probably_damaging(0.966) TCGA-VQ-A91D-01 11 33886351 33886351 A G LMO2 Silent p.D87D 0.23 TCGA-VQ-A91D-01 11 36248794 36248794 C T LDLRAD3 Missense_Mutation p.T205M 0.26 deleterious(0.03) benign(0.198) TCGA-VQ-A91D-01 11 3794915 3794915 T C NUP98 Missense_Mutation p.T184A 0.34 tolerated(0.15) probably_damaging(0.994) TCGA-VQ-A91D-01 11 428112 428112 A G ANO9 Missense_Mutation p.I437T 0.14 deleterious(0) possibly_damaging(0.876) TCGA-VQ-A91D-01 11 429589 429589 T C ANO9 Missense_Mutation p.Y299C 0.38 deleterious(0.02) probably_damaging(0.982) TCGA-VQ-A91D-01 11 44072890 44072890 G A ACCSL Missense_Mutation p.R214Q 0.24 deleterious(0.03) possibly_damaging(0.56) TCGA-VQ-A91D-01 11 44286624 44286624 G - ALX4 Frame_Shift_Del p.P339Lfs*12 0.35 TCGA-VQ-A91D-01 11 44331595 44331595 G A ALX4 Silent p.C6C 0.36 TCGA-VQ-A91D-01 11 44639723 44639723 C T CD82 Silent p.C150C 0.34 TCGA-VQ-A91D-01 11 4510932 4510932 C T OR52K1 Missense_Mutation p.R268C 0.28 deleterious(0.04) benign(0.008) TCGA-VQ-A91D-01 11 45671848 45671848 C T CHST1 Missense_Mutation p.R209H 0.26 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 11 45935924 45935924 G - PEX16 Frame_Shift_Del p.L213Wfs*42 0.23 TCGA-VQ-A91D-01 11 45947819 45947819 G A GYLTL1B Missense_Mutation p.R310H 0.41 tolerated(0.09) benign(0.037) TCGA-VQ-A91D-01 11 46455096 46455096 G A AMBRA1 Silent p.H878H 0.37 TCGA-VQ-A91D-01 11 46691025 46691025 A G ATG13 Silent p.P506P 0.34 TCGA-VQ-A91D-01 11 46703675 46703675 C T ARHGAP1 Silent p.L125L 0.36 TCGA-VQ-A91D-01 11 47196853 47196853 A - ARFGAP2 Frame_Shift_Del p.R93Afs*43 0.30 TCGA-VQ-A91D-01 11 49175899 49175899 G A FOLH1 Missense_Mutation p.S590F 0.17 deleterious(0) probably_damaging(0.982) TCGA-VQ-A91D-01 11 49229938 49229938 G A FOLH1 Silent p.T8T 0.32 TCGA-VQ-A91D-01 11 499088 499088 C T RNH1 Missense_Mutation p.D181N 0.34 tolerated(0.33) benign(0.249) TCGA-VQ-A91D-01 11 534290 534290 G A HRAS Silent p.A11A 0.30 TCGA-VQ-A91D-01 11 55038137 55038137 T C TRIM48 3'UTR 0.31 TCGA-VQ-A91D-01 11 55406142 55406142 T - OR4P4 Frame_Shift_Del p.F105Lfs*4 0.38 TCGA-VQ-A91D-01 11 55406329 55406329 T G OR4P4 Missense_Mutation p.F166V 0.09 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 11 55658707 55658707 G A TRIM51 Missense_Mutation p.D320N 0.07 tolerated(0.36) benign(0.001) TCGA-VQ-A91D-01 11 558069 558069 G - C11orf35 Intron 0.27 TCGA-VQ-A91D-01 11 57004161 57004161 G T APLNR Missense_Mutation p.S106R 0.38 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 11 57105990 57105990 C - SSRP1 5'Flank 0.23 TCGA-VQ-A91D-01 11 57464263 57464263 C T ZDHHC5 Missense_Mutation p.P347L 0.29 deleterious(0) possibly_damaging(0.791) TCGA-VQ-A91D-01 11 58962827 58962827 C - DTX4 Frame_Shift_Del p.G510Afs*35 0.26 TCGA-VQ-A91D-01 11 6023712 6023712 A G OR56A4 Missense_Mutation p.Y223H 0.21 deleterious(0) probably_damaging(0.997) TCGA-VQ-A91D-01 11 60665655 60665655 G A PRPF19 Missense_Mutation p.A410V 0.34 deleterious(0.02) benign(0.327) TCGA-VQ-A91D-01 11 60695147 60695147 G A TMEM132A Missense_Mutation p.R117Q 0.34 tolerated(0.3) benign(0.005) TCGA-VQ-A91D-01 11 61136178 61136178 G A TMEM138 Silent p.R162R 0.35 TCGA-VQ-A91D-01 11 61539013 61539013 C - MYRF Frame_Shift_Del p.S264Afs*8 0.37 TCGA-VQ-A91D-01 11 61544865 61544865 C A MYRF Missense_Mutation p.H574N 0.11 tolerated(0.6) benign(0.084) TCGA-VQ-A91D-01 11 62284586 62284586 A G AHNAK Missense_Mutation p.F5768S 0.07 probably_damaging(0.999) TCGA-VQ-A91D-01 11 62297596 62297596 G A AHNAK Silent p.D1431D 0.27 TCGA-VQ-A91D-01 11 62376543 62376543 C T EML3 Missense_Mutation p.V274I 0.38 tolerated(0.05) possibly_damaging(0.669) TCGA-VQ-A91D-01 11 62457964 62457964 G T BSCL2 Missense_Mutation p.L422M 0.12 deleterious_low_confidence(0.02) probably_damaging(0.962) TCGA-VQ-A91D-01 11 62656031 62656031 G A SLC3A2 Missense_Mutation p.A588T 0.38 tolerated(0.26) benign(0.001) TCGA-VQ-A91D-01 11 63676381 63676381 A C MARK2 Missense_Mutation p.K680T 0.18 tolerated(0.24) possibly_damaging(0.533) TCGA-VQ-A91D-01 11 64055248 64055248 G - GPR137 Frame_Shift_Del p.V213Cfs*24 0.25 TCGA-VQ-A91D-01 11 64055572 64055572 C T GPR137 Silent p.G281G 0.52 TCGA-VQ-A91D-01 11 64329755 64329755 G A SLC22A11 Silent p.T223T 0.31 TCGA-VQ-A91D-01 11 64525931 64525931 G A PYGM Silent p.N134N 0.25 TCGA-VQ-A91D-01 11 64570559 64570559 G A MAP4K2 Silent p.R21R 0.20 TCGA-VQ-A91D-01 11 64572244 64572244 G A MEN1 Silent p.A470A 0.40 TCGA-VQ-A91D-01 11 6500106 6500106 C T ARFIP2 Silent p.L133L 0.25 TCGA-VQ-A91D-01 11 65393522 65393522 C T PCNXL3 Missense_Mutation p.R1126C 0.36 deleterious(0.01) benign(0.16) TCGA-VQ-A91D-01 11 66063018 66063018 C T TMEM151A Missense_Mutation p.T434M 0.38 tolerated(0.07) possibly_damaging(0.614) TCGA-VQ-A91D-01 11 66114217 66114217 C T B3GNT1 Missense_Mutation p.R267H 0.27 deleterious(0.02) benign(0.301) TCGA-VQ-A91D-01 11 66204686 66204686 G A MRPL11 Missense_Mutation p.A121V 0.08 deleterious(0.02) probably_damaging(0.997) TCGA-VQ-A91D-01 11 6651462 6651462 G A DCHS1 Silent p.N1521N 0.50 TCGA-VQ-A91D-01 11 6661693 6661693 G A DCHS1 Silent p.L384L 0.34 TCGA-VQ-A91D-01 11 6661830 6661830 C - DCHS1 Frame_Shift_Del p.A339Lfs*10 0.32 TCGA-VQ-A91D-01 11 67205109 67205109 G A PTPRCAP 5'UTR 0.43 TCGA-VQ-A91D-01 11 67933353 67933353 C T SUV420H1 Intron 0.40 TCGA-VQ-A91D-01 11 68193527 68193527 T A LRP5 Missense_Mutation p.I1170N 0.06 deleterious(0.01) benign(0.278) TCGA-VQ-A91D-01 11 69625251 69625251 C T FGF3 Missense_Mutation p.R181H 0.38 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91D-01 11 71238963 71238963 G A KRTAP5-7 3'UTR 0.27 TCGA-VQ-A91D-01 11 71671927 71671927 G A RNF121 Missense_Mutation p.R78H 0.42 tolerated(0.07) benign(0.387) TCGA-VQ-A91D-01 11 71712465 71712465 G A IL18BP Missense_Mutation p.S125N 0.35 tolerated(0.53) benign(0.003) TCGA-VQ-A91D-01 11 71723474 71723474 C A NUMA1 Missense_Mutation p.E1541D 0.28 probably_damaging(0.994) TCGA-VQ-A91D-01 11 71729440 71729440 A G NUMA1 Splice_Site p.X287_splice 0.21 TCGA-VQ-A91D-01 11 72145387 72145387 C T CLPB Silent p.E44E 0.21 TCGA-VQ-A91D-01 11 72408061 72408061 G A ARAP1 Missense_Mutation p.R1045C 0.36 deleterious(0) possibly_damaging(0.892) TCGA-VQ-A91D-01 11 73074873 73074873 C T ARHGEF17 Silent p.C1776C 0.29 TCGA-VQ-A91D-01 11 7334747 7334747 T G SYT9 Missense_Mutation p.S207A 0.34 tolerated(0.11) possibly_damaging(0.764) TCGA-VQ-A91D-01 11 73611437 73611437 C T PAAF1 Silent p.C168C 0.39 TCGA-VQ-A91D-01 11 73759383 73759383 T C C2CD3 Missense_Mutation p.I1788V 0.22 tolerated(0.48) benign(0.007) TCGA-VQ-A91D-01 11 73825472 73825472 T - C2CD3 Frame_Shift_Del p.S563Afs*9 0.24 TCGA-VQ-A91D-01 11 76371732 76371732 A G LRRC32 Missense_Mutation p.L302P 0.20 tolerated(0.12) benign(0.015) TCGA-VQ-A91D-01 11 7689748 7689748 T - CYB5R2 Frame_Shift_Del p.T145Hfs*8 0.29 TCGA-VQ-A91D-01 11 78381369 78381369 G A TENM4 Silent p.G2007G 0.43 TCGA-VQ-A91D-01 11 791990 791990 G A SLC25A22 Silent p.F299F 0.35 TCGA-VQ-A91D-01 11 800173 800173 G A PIDD Silent p.G744G 0.35 TCGA-VQ-A91D-01 11 82639949 82639949 T - C11orf82 Frame_Shift_Del p.F83Lfs*31 0.28 TCGA-VQ-A91D-01 11 83344270 83344270 G A DLG2 Missense_Mutation p.R642C 0.39 deleterious(0) possibly_damaging(0.857) TCGA-VQ-A91D-01 11 85610047 85610047 C A CCDC83 Missense_Mutation p.L221I 0.13 deleterious(0) probably_damaging(0.968) TCGA-VQ-A91D-01 11 85630536 85630536 A G CCDC83 Missense_Mutation p.M440V 0.40 tolerated(0.26) benign(0.034) TCGA-VQ-A91D-01 11 862575 862575 T G TSPAN4 Missense_Mutation p.V30G 0.14 deleterious(0) probably_damaging(0.998) TCGA-VQ-A91D-01 11 87006838 87006838 T C TMEM135 Missense_Mutation p.L175S 0.34 tolerated(0.59) probably_damaging(0.986) TCGA-VQ-A91D-01 11 88241718 88241718 C T GRM5 3'UTR 0.39 TCGA-VQ-A91D-01 11 88242557 88242557 C T GRM5 Missense_Mutation p.V948I 0.26 tolerated_low_confidence(0.2) benign(0.041) TCGA-VQ-A91D-01 11 89069056 89069056 G A NOX4 Missense_Mutation p.R525W 0.35 deleterious(0) possibly_damaging(0.832) TCGA-VQ-A91D-01 11 92087211 92087211 A - FAT3 Frame_Shift_Del p.N646Mfs*61 0.28 TCGA-VQ-A91D-01 11 93118683 93118683 C T CCDC67 Silent p.C303C 0.36 TCGA-VQ-A91D-01 11 93808359 93808359 G A HEPHL1 Silent p.A508A 0.31 TCGA-VQ-A91D-01 11 94038820 94038820 G A FOLR4 Silent p.P6P 0.29 TCGA-VQ-A91D-01 11 9871588 9871588 T C SBF2 Missense_Mutation p.T930A 0.29 deleterious(0.03) possibly_damaging(0.685) TCGA-VQ-A91D-01 12 100200263 100200263 C T ANKS1B Silent p.T196T 0.08 TCGA-VQ-A91D-01 12 1023063 1023063 T C RAD52 Missense_Mutation p.T398A 0.53 tolerated(0.78) benign(0.005) TCGA-VQ-A91D-01 12 103696040 103696040 G A C12orf42 Missense_Mutation p.A310V 0.19 tolerated(0.09) possibly_damaging(0.698) TCGA-VQ-A91D-01 12 104030939 104030939 C T STAB2 Missense_Mutation p.P212S 0.41 tolerated(0.42) benign(0.126) TCGA-VQ-A91D-01 12 104396914 104396914 G A GLT8D2 Nonsense_Mutation p.R95* 0.37 TCGA-VQ-A91D-01 12 10531285 10531285 A G KLRK1 Silent p.C99C 0.19 TCGA-VQ-A91D-01 12 10603712 10603712 G - KLRC1 Frame_Shift_Del p.P15Qfs*18 0.16 TCGA-VQ-A91D-01 12 107113803 107113803 G A RFX4 Missense_Mutation p.D411N 0.28 deleterious(0.02) benign(0.187) TCGA-VQ-A91D-01 12 107393367 107393367 G A CRY1 Nonsense_Mutation p.R367* 0.32 TCGA-VQ-A91D-01 12 108102782 108102782 A T PWP1 Missense_Mutation p.D386V 0.33 tolerated(0.17) benign(0.048) TCGA-VQ-A91D-01 12 10854719 10854719 C T YBX3 Missense_Mutation p.R298H 0.14 tolerated(0.07) benign(0.021) TCGA-VQ-A91D-01 12 108589735 108589735 G A WSCD2 Silent p.Q42Q 0.37 TCGA-VQ-A91D-01 12 108913086 108913086 A G FICD Missense_Mutation p.E404G 0.09 tolerated(0.07) benign(0.341) TCGA-VQ-A91D-01 12 109041149 109041150 - T CORO1C 3'UTR 0.31 TCGA-VQ-A91D-01 12 109898544 109898544 G A KCTD10 Missense_Mutation p.A95V 0.40 tolerated(0.2) benign(0.327) TCGA-VQ-A91D-01 12 110206185 110206185 C A FAM222A Missense_Mutation p.P151T 0.36 deleterious(0.03) probably_damaging(0.996) TCGA-VQ-A91D-01 12 110386618 110386618 C T GIT2 Intron 0.19 TCGA-VQ-A91D-01 12 110777378 110777378 C A ATP2A2 Missense_Mutation p.S538Y 0.22 deleterious(0.01) benign(0.331) TCGA-VQ-A91D-01 12 110825595 110825595 G A ANAPC7 Missense_Mutation p.A242V 0.41 deleterious(0.01) benign(0.108) TCGA-VQ-A91D-01 12 112600860 112600860 G - HECTD4 Frame_Shift_Del p.P4223Qfs*21 0.33 TCGA-VQ-A91D-01 12 11338935 11338936 - A TAS2R42 Frame_Shift_Ins p.L203Ffs*10 0.31 TCGA-VQ-A91D-01 12 114397047 114397047 C T RBM19 Missense_Mutation p.E181K 0.11 tolerated(0.1) benign(0.031) TCGA-VQ-A91D-01 12 114397139 114397139 G A RBM19 Missense_Mutation p.A150V 0.28 deleterious(0.03) benign(0.082) TCGA-VQ-A91D-01 12 116446931 116446931 C T MED13L Silent p.K429K 0.30 TCGA-VQ-A91D-01 12 117977605 117977605 G - KSR2 Frame_Shift_Del p.L536Sfs*61 0.22 TCGA-VQ-A91D-01 12 120594337 120594337 C T GCN1L1 Silent p.E1080E 0.33 TCGA-VQ-A91D-01 12 120660532 120660532 G - PXN Frame_Shift_Del p.P172Rfs*6 0.27 TCGA-VQ-A91D-01 12 120800903 120800903 C - MSI1 Frame_Shift_Del p.L116Cfs*3 0.27 TCGA-VQ-A91D-01 12 120882653 120882653 T C TRIAP1 3'UTR 0.16 TCGA-VQ-A91D-01 12 120934289 120934289 T C DYNLL1 Missense_Mutation p.V22A 0.39 deleterious(0.05) possibly_damaging(0.697) TCGA-VQ-A91D-01 12 121659784 121659784 C T P2RX4 Silent p.P133P 0.32 TCGA-VQ-A91D-01 12 121660769 121660769 C T P2RX4 Silent p.C165C 0.29 TCGA-VQ-A91D-01 12 121693359 121693359 C T CAMKK2 Missense_Mutation p.E301K 0.41 deleterious(0) probably_damaging(0.96) TCGA-VQ-A91D-01 12 122626429 122626429 C - MLXIP 3'UTR 0.31 TCGA-VQ-A91D-01 12 122825412 122825412 C T CLIP1 Missense_Mutation p.R780Q 0.34 tolerated(0.99) benign(0.004) TCGA-VQ-A91D-01 12 122839836 122839836 G A CLIP1 Silent p.Y343Y 0.33 TCGA-VQ-A91D-01 12 12315230 12315230 T C LRP6 Missense_Mutation p.T726A 0.40 tolerated(0.2) possibly_damaging(0.471) TCGA-VQ-A91D-01 12 123187185 123187185 G A HCAR2 Missense_Mutation p.R216W 0.20 deleterious(0) possibly_damaging(0.636) TCGA-VQ-A91D-01 12 123214605 123214605 C T HCAR1 Silent p.T94T 0.43 TCGA-VQ-A91D-01 12 124265627 124265628 - T DNAH10 Frame_Shift_Ins p.L149Ffs*24 0.31 TCGA-VQ-A91D-01 12 124341719 124341719 C T DNAH10 Silent p.R2067R 0.31 TCGA-VQ-A91D-01 12 125509877 125509877 C T BRI3BP Silent p.S219S 0.14 TCGA-VQ-A91D-01 12 130648972 130648972 C T FZD10 Silent p.A495A 0.23 TCGA-VQ-A91D-01 12 130831057 130831057 C T PIWIL1 Silent p.H153H 0.28 TCGA-VQ-A91D-01 12 130926847 130926847 G A RIMBP2 Silent p.N333N 0.41 TCGA-VQ-A91D-01 12 132237712 132237712 G A SFSWAP Missense_Mutation p.G376S 0.30 deleterious(0.04) probably_damaging(1) TCGA-VQ-A91D-01 12 132281820 132281820 C T SFSWAP Missense_Mutation p.R930W 0.34 deleterious_low_confidence(0.01) unknown(0) TCGA-VQ-A91D-01 12 132284040 132284040 G A SFSWAP 3'UTR 0.39 TCGA-VQ-A91D-01 12 132537755 132537755 G A EP400 Missense_Mutation p.A2487T 0.09 unknown(0) TCGA-VQ-A91D-01 12 132635532 132635532 C G NOC4L Missense_Mutation p.A303G 0.35 deleterious(0) possibly_damaging(0.468) TCGA-VQ-A91D-01 12 133209337 133209337 G A POLE Missense_Mutation p.R2017C 0.24 deleterious(0.02) benign(0.339) TCGA-VQ-A91D-01 12 133225927 133225927 G A POLE Missense_Mutation p.R1324C 0.18 deleterious(0) probably_damaging(0.95) TCGA-VQ-A91D-01 12 133324427 133324427 G - ANKLE2 Frame_Shift_Del p.D408Tfs*20 0.21 TCGA-VQ-A91D-01 12 133733331 133733331 G A ZNF10 Missense_Mutation p.R500Q 0.28 tolerated(1) probably_damaging(0.978) TCGA-VQ-A91D-01 12 13526220 13526220 G A C12orf36 Missense_Mutation p.T112M 0.34 benign(0.001) TCGA-VQ-A91D-01 12 14577524 14577524 C T ATF7IP Silent p.A225A 0.23 TCGA-VQ-A91D-01 12 14849169 14849169 C A GUCY2C Missense_Mutation p.A72S 0.08 tolerated(0.55) benign(0.035) TCGA-VQ-A91D-01 12 15731812 15731812 T C PTPRO Missense_Mutation p.I952T 0.30 tolerated(0.29) possibly_damaging(0.759) TCGA-VQ-A91D-01 12 19436323 19436323 C T PLEKHA5 Missense_Mutation p.P475S 0.31 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91D-01 12 19436442 19436442 G A PLEKHA5 Silent p.Q514Q 0.31 TCGA-VQ-A91D-01 12 21008065 21008065 C T LST3 Missense_Mutation p.S63F 0.32 deleterious(0) probably_damaging(0.998) TCGA-VQ-A91D-01 12 21207401 21207401 A G SLCO1B7 Missense_Mutation p.S458G 0.20 deleterious(0) benign(0.444) TCGA-VQ-A91D-01 12 21693487 21693487 G A GYS2 Missense_Mutation p.R556W 0.39 deleterious(0) probably_damaging(0.937) TCGA-VQ-A91D-01 12 22627742 22627742 C T C2CD5 Silent p.S662S 0.36 TCGA-VQ-A91D-01 12 248437 248437 C A IQSEC3 Missense_Mutation p.N636K 0.32 deleterious(0.01) probably_damaging(0.932) TCGA-VQ-A91D-01 12 25380283 25380283 C T KRAS Missense_Mutation p.A59T 0.23 tolerated(0.06) possibly_damaging(0.528) TCGA-VQ-A91D-01 12 39745580 39745580 T - KIF21A Frame_Shift_Del p.R558Gfs*42 0.28 TCGA-VQ-A91D-01 12 41967026 41967026 G T PDZRN4 Missense_Mutation p.K815N 0.32 tolerated(0.12) benign(0.003) TCGA-VQ-A91D-01 12 420175 420175 C T KDM5A Missense_Mutation p.R1031H 0.36 deleterious(0.03) possibly_damaging(0.858) TCGA-VQ-A91D-01 12 42864092 42864092 G A PRICKLE1 Missense_Mutation p.R68W 0.21 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91D-01 12 46246297 46246297 G A ARID2 Missense_Mutation p.R1464H 0.28 tolerated_low_confidence(0.1) probably_damaging(0.967) TCGA-VQ-A91D-01 12 4723010 4723010 A - DYRK4 3'UTR 0.17 TCGA-VQ-A91D-01 12 48095314 48095315 - T RPAP3 Frame_Shift_Ins p.T76Nfs*14 0.20 TCGA-VQ-A91D-01 12 48381063 48381063 T C COL2A1 Missense_Mutation p.K419E 0.26 unknown(0) TCGA-VQ-A91D-01 12 48482586 48482586 T C SENP1 Silent p.S126S 0.56 TCGA-VQ-A91D-01 12 49065687 49065687 G A KANSL2 Missense_Mutation p.R202C 0.36 deleterious(0) probably_damaging(0.998) TCGA-VQ-A91D-01 12 4919358 4919358 C T KCNA6 Missense_Mutation p.R51C 0.40 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91D-01 12 4920415 4920415 A G KCNA6 Missense_Mutation p.D403G 0.30 tolerated(0.3) benign(0.01) TCGA-VQ-A91D-01 12 49359948 49359948 C T WNT10B Missense_Mutation p.R367H 0.21 deleterious(0.02) benign(0.027) TCGA-VQ-A91D-01 12 49390973 49390973 G - DDN Frame_Shift_Del p.T563Rfs*11 0.23 TCGA-VQ-A91D-01 12 49434492 49434492 G - KMT2D Frame_Shift_Del p.P2354Lfs*30 0.24 TCGA-VQ-A91D-01 12 49691349 49691349 C T PRPH Silent p.G402G 0.13 TCGA-VQ-A91D-01 12 49742942 49742942 T C DNAJC22 Missense_Mutation p.L96P 0.06 deleterious(0.01) probably_damaging(0.965) TCGA-VQ-A91D-01 12 49943420 49943420 C T KCNH3 Silent p.T555T 0.42 TCGA-VQ-A91D-01 12 50044556 50044556 T C FMNL3 Missense_Mutation p.K635E 0.26 deleterious(0) probably_damaging(0.99) TCGA-VQ-A91D-01 12 50188960 50188960 C T NCKAP5L Missense_Mutation p.V895M 0.26 tolerated(0.34) benign(0.11) TCGA-VQ-A91D-01 12 50190759 50190759 C T NCKAP5L Missense_Mutation p.G295D 0.70 tolerated_low_confidence(0.18) probably_damaging(1) TCGA-VQ-A91D-01 12 50368120 50368120 T C AQP6 Missense_Mutation p.V139A 0.27 tolerated(0.14) benign(0.011) TCGA-VQ-A91D-01 12 50616100 50616100 C T LIMA1 Missense_Mutation p.A112T 0.28 tolerated(0.38) benign(0.001) TCGA-VQ-A91D-01 12 51319064 51319064 G - METTL7A Frame_Shift_Del p.A83Pfs*12 0.26 TCGA-VQ-A91D-01 12 51319202 51319202 G T METTL7A Silent p.G127G 0.32 TCGA-VQ-A91D-01 12 52115567 52115567 C T SCN8A Missense_Mutation p.R625C 0.23 tolerated(0.12) probably_damaging(0.959) TCGA-VQ-A91D-01 12 52281935 52281935 T A ANKRD33 5'UTR 0.26 TCGA-VQ-A91D-01 12 52408543 52408543 G A GRASP Missense_Mutation p.A250T 0.38 tolerated(0.24) benign(0.041) TCGA-VQ-A91D-01 12 52449814 52449814 C T NR4A1 Missense_Mutation p.R306C 0.28 deleterious(0) possibly_damaging(0.873) TCGA-VQ-A91D-01 12 52470846 52470846 G A C12orf44 Missense_Mutation p.V177M 0.32 deleterious(0) probably_damaging(0.965) TCGA-VQ-A91D-01 12 52695691 52695691 A - KRT86 5'UTR 0.27 TCGA-VQ-A91D-01 12 52754709 52754709 G A KRT85 Silent p.D484D 0.31 TCGA-VQ-A91D-01 12 52788935 52788935 C - KRT82 Frame_Shift_Del p.V456Sfs*35 0.19 TCGA-VQ-A91D-01 12 52793830 52793830 G A KRT82 Missense_Mutation p.A294V 0.38 deleterious(0) possibly_damaging(0.489) TCGA-VQ-A91D-01 12 52794362 52794362 G A KRT82 Silent p.N242N 0.25 TCGA-VQ-A91D-01 12 52799827 52799827 C T KRT82 Missense_Mutation p.G79R 0.34 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91D-01 12 52845768 52845768 C A KRT6B Missense_Mutation p.G32V 0.39 deleterious(0.04) unknown(0) TCGA-VQ-A91D-01 12 52960851 52960851 C T KRT74 Missense_Mutation p.G498R 0.38 tolerated_low_confidence(0.24) benign(0.015) TCGA-VQ-A91D-01 12 53070194 53070194 A C KRT1 Missense_Mutation p.L447R 0.31 deleterious(0) probably_damaging(0.978) TCGA-VQ-A91D-01 12 53089618 53089618 G T KRT77 Missense_Mutation p.L285M 0.12 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 12 53188039 53188039 A G KRT3 Missense_Mutation p.I241T 0.33 tolerated(0.69) benign(0.055) TCGA-VQ-A91D-01 12 53446255 53446255 G A TENC1 Silent p.T77T 0.33 TCGA-VQ-A91D-01 12 53553931 53553931 C T CSAD Missense_Mutation p.R407H 0.41 tolerated(0.95) probably_damaging(0.999) TCGA-VQ-A91D-01 12 53722459 53722459 C - SP7 Frame_Shift_Del p.G256Vfs*23 0.23 TCGA-VQ-A91D-01 12 53899636 53899636 T C TARBP2 Splice_Site p.X315_splice 0.27 TCGA-VQ-A91D-01 12 53899971 53899971 C A TARBP2 3'UTR 0.47 TCGA-VQ-A91D-01 12 54109631 54109631 C A CALCOCO1 Missense_Mutation p.K402N 0.32 deleterious(0.01) probably_damaging(0.976) TCGA-VQ-A91D-01 12 54338884 54338884 C T HOXC13 Silent p.Y279Y 0.09 TCGA-VQ-A91D-01 12 54963089 54963091 GAG - PDE1B In_Frame_Del p.E118del 0.38 TCGA-VQ-A91D-01 12 56222424 56222424 C T DNAJC14 Missense_Mutation p.G7R 0.26 deleterious_low_confidence(0) possibly_damaging(0.76) TCGA-VQ-A91D-01 12 56347514 56347514 C - DGKA Frame_Shift_Del p.R726Afs*9 0.26 TCGA-VQ-A91D-01 12 56349597 56349597 C - PMEL Frame_Shift_Del p.D508Mfs*5 0.26 TCGA-VQ-A91D-01 12 56478854 56478854 G A ERBB3 Missense_Mutation p.V104M 0.34 deleterious(0.05) possibly_damaging(0.789) TCGA-VQ-A91D-01 12 56487323 56487323 G A ERBB3 Missense_Mutation p.R490H 0.40 tolerated(0.12) benign(0.062) TCGA-VQ-A91D-01 12 56638158 56638158 G A ANKRD52 Silent p.A928A 0.41 TCGA-VQ-A91D-01 12 56811785 56811785 G A TIMELESS Silent p.D1154D 0.37 TCGA-VQ-A91D-01 12 57323335 57323335 C T SDR9C7 Missense_Mutation p.R188H 0.28 deleterious(0.02) benign(0.209) TCGA-VQ-A91D-01 12 57599180 57599180 C T LRP1 Silent p.D3794D 0.47 TCGA-VQ-A91D-01 12 57957931 57957931 G A KIF5A Missense_Mutation p.R111Q 0.31 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 12 58004072 58004072 G A ARHGEF25 Missense_Mutation p.A25T 0.28 deleterious_low_confidence(0.01) benign(0.011) TCGA-VQ-A91D-01 12 58020618 58020618 T C B4GALNT1 Missense_Mutation p.Y504C 0.30 deleterious(0) possibly_damaging(0.671) TCGA-VQ-A91D-01 12 58021506 58021506 G T B4GALNT1 Missense_Mutation p.P427T 0.25 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 12 58202016 58202016 G A AVIL Silent p.A385A 0.28 TCGA-VQ-A91D-01 12 59270309 59270309 G A LRIG3 Silent p.Y871Y 0.27 TCGA-VQ-A91D-01 12 6058995 6058995 C A VWF Missense_Mutation p.G2737V 0.23 deleterious(0) probably_damaging(0.972) TCGA-VQ-A91D-01 12 6127785 6127785 G A VWF Missense_Mutation p.A1600V 0.30 tolerated(0.41) benign(0.007) TCGA-VQ-A91D-01 12 62708647 62708647 G A USP15 Missense_Mutation p.G142E 0.07 deleterious(0.02) benign(0.018) TCGA-VQ-A91D-01 12 63541366 63541366 T C AVPR1A Missense_Mutation p.N344D 0.34 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91D-01 12 64011158 64011158 G T DPY19L2 Missense_Mutation p.L382I 0.21 tolerated(0.16) benign(0.05) TCGA-VQ-A91D-01 12 6464487 6464487 C T SCNN1A Missense_Mutation p.G424D 0.30 tolerated(0.24) possibly_damaging(0.844) TCGA-VQ-A91D-01 12 6729418 6729418 C T LPAR5 Missense_Mutation p.E333K 0.36 tolerated(0.49) benign(0.026) TCGA-VQ-A91D-01 12 68043612 68043612 G T DYRK2 Missense_Mutation p.A29S 0.12 tolerated_low_confidence(0.67) benign(0) TCGA-VQ-A91D-01 12 68051508 68051508 G A DYRK2 Missense_Mutation p.R274Q 0.40 deleterious(0) benign(0.219) TCGA-VQ-A91D-01 12 68052134 68052134 C T DYRK2 Missense_Mutation p.R483W 0.32 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91D-01 12 68709980 68709980 C T MDM1 Silent p.T353T 0.30 TCGA-VQ-A91D-01 12 70003887 70003887 C T LRRC10 Silent p.T244T 0.30 TCGA-VQ-A91D-01 12 7551043 7551043 G A CD163L1 Nonsense_Mutation p.Q516* 0.34 TCGA-VQ-A91D-01 12 75804271 75804271 A G GLIPR1L2 Missense_Mutation p.T98A 0.44 tolerated(0.25) benign(0.003) TCGA-VQ-A91D-01 12 75893593 75893593 T - KRR1 Frame_Shift_Del p.K381Sfs*8 0.47 TCGA-VQ-A91D-01 12 78515885 78515885 C T NAV3 Silent p.S1305S 0.43 TCGA-VQ-A91D-01 12 7882277 7882277 C T CLEC4C Missense_Mutation p.R186H 0.31 tolerated(0.15) benign(0.236) TCGA-VQ-A91D-01 12 79679620 79679620 A C SYT1 Missense_Mutation p.T74P 0.22 tolerated(0.2) benign(0.439) TCGA-VQ-A91D-01 12 7984302 7984302 T C SLC2A14 Missense_Mutation p.E80G 0.06 tolerated(0.1) benign(0.064) TCGA-VQ-A91D-01 12 80328655 80328655 G T PPP1R12A Silent p.G19G 0.38 TCGA-VQ-A91D-01 12 81675077 81675077 T - PPFIA2 Frame_Shift_Del p.D1058Ifs*6 0.30 TCGA-VQ-A91D-01 12 8666271 8666271 A - CLEC4D 5'UTR 0.66 TCGA-VQ-A91D-01 12 8800754 8800754 C T MFAP5 Missense_Mutation p.R152H 0.21 deleterious(0) probably_damaging(0.912) TCGA-VQ-A91D-01 12 88379686 88379686 G A C12orf50 Missense_Mutation p.T356M 0.30 tolerated(0.06) benign(0.071) TCGA-VQ-A91D-01 12 88453691 88453691 C T CEP290 Missense_Mutation p.R2210H 0.43 probably_damaging(0.952) TCGA-VQ-A91D-01 12 88588949 88588949 A - TMTC3 Frame_Shift_Del p.K758Nfs*31 0.13 TCGA-VQ-A91D-01 12 89998030 89998030 G A ATP2B1 Nonsense_Mutation p.R846* 0.30 TCGA-VQ-A91D-01 12 9021772 9021772 T C A2ML1 Silent p.T1398T 0.38 TCGA-VQ-A91D-01 12 9303275 9303275 G A PZP Missense_Mutation p.P1450L 0.09 deleterious(0) possibly_damaging(0.746) TCGA-VQ-A91D-01 12 94673260 94673260 G A PLXNC1 Missense_Mutation p.V1204I 0.36 tolerated(0.6) benign(0.001) TCGA-VQ-A91D-01 12 95483428 95483428 A G FGD6 Missense_Mutation p.S1299P 0.41 deleterious(0.01) benign(0.101) TCGA-VQ-A91D-01 12 95888756 95888756 G A METAP2 Missense_Mutation p.R205H 0.33 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91D-01 12 95914968 95914968 G A USP44 Missense_Mutation p.R582C 0.33 deleterious(0) benign(0.194) TCGA-VQ-A91D-01 12 96688857 96688857 C T CDK17 Missense_Mutation p.R306K 0.37 tolerated(0.59) benign(0.001) TCGA-VQ-A91D-01 12 96704942 96704942 C T CDK17 Missense_Mutation p.R144Q 0.23 deleterious(0.02) benign(0.301) TCGA-VQ-A91D-01 13 102521112 102521112 T C FGF14 Missense_Mutation p.Y129C 0.23 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 13 110434403 110434403 G A IRS2 Missense_Mutation p.A1333V 0.41 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-VQ-A91D-01 13 110814597 110814597 C T COL4A1 Missense_Mutation p.R1481Q 0.31 unknown(0) TCGA-VQ-A91D-01 13 113771820 113771820 G - F7 Frame_Shift_Del p.T241Pfs*2 0.28 TCGA-VQ-A91D-01 13 115091332 115091332 A G CHAMP1 Missense_Mutation p.D672G 0.35 deleterious(0.04) benign(0.002) TCGA-VQ-A91D-01 13 19751673 19751673 T C TUBA3C Silent p.A150A 0.32 TCGA-VQ-A91D-01 13 20659977 20659977 T A ZMYM2 Missense_Mutation p.N1319K 0.15 tolerated(1) benign(0.416) TCGA-VQ-A91D-01 13 21562730 21562730 G A LATS2 Missense_Mutation p.R397W 0.42 deleterious_low_confidence(0) benign(0.425) TCGA-VQ-A91D-01 13 23912786 23912786 G A SACS Silent p.S1743S 0.35 TCGA-VQ-A91D-01 13 24243028 24243028 C T TNFRSF19 Missense_Mutation p.S346F 0.07 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-VQ-A91D-01 13 24871849 24871849 C T SPATA13 Missense_Mutation p.R1187W 0.35 deleterious(0) probably_damaging(0.921) TCGA-VQ-A91D-01 13 25255770 25255770 G A ATP12A Missense_Mutation p.G27D 0.36 tolerated_low_confidence(0.09) benign(0.005) TCGA-VQ-A91D-01 13 25267006 25267006 C G ATP12A Missense_Mutation p.P456R 0.34 tolerated(0.13) possibly_damaging(0.667) TCGA-VQ-A91D-01 13 30077406 30077406 A G MTUS2 3'UTR 0.24 TCGA-VQ-A91D-01 13 31480852 31480852 G - MEDAG Frame_Shift_Del p.G69Afs*29 0.31 TCGA-VQ-A91D-01 13 31724187 31724187 A T HSPH1 Silent p.I347I 0.38 TCGA-VQ-A91D-01 13 31843388 31843388 G A B3GALTL Missense_Mutation p.D212N 0.30 deleterious(0) probably_damaging(0.949) TCGA-VQ-A91D-01 13 31891767 31891767 C T B3GALTL Missense_Mutation p.R377C 0.27 deleterious(0) probably_damaging(0.998) TCGA-VQ-A91D-01 13 32355850 32355850 G A RXFP2 Silent p.T276T 0.43 TCGA-VQ-A91D-01 13 32912670 32912670 C T BRCA2 Missense_Mutation p.A1393V 0.23 tolerated(1) benign(0) TCGA-VQ-A91D-01 13 35745491 35745491 T C NBEA Missense_Mutation p.V1442A 0.10 tolerated(0.51) probably_damaging(0.997) TCGA-VQ-A91D-01 13 36049745 36049745 G A MAB21L1 Silent p.T177T 0.42 TCGA-VQ-A91D-01 13 36125103 36125104 - A NBEA Frame_Shift_Ins p.V2250Sfs*4 0.24 TCGA-VQ-A91D-01 13 37453530 37453530 C T SMAD9 Silent p.P99P 0.29 TCGA-VQ-A91D-01 13 39438422 39438422 C T FREM2 Silent p.P2554P 0.31 TCGA-VQ-A91D-01 13 39453092 39453092 T C FREM2 Missense_Mutation p.V2995A 0.07 deleterious(0.01) benign(0.444) TCGA-VQ-A91D-01 13 41892982 41892982 A - NAA16 Frame_Shift_Del p.E63Kfs*38 0.24 TCGA-VQ-A91D-01 13 42267062 42267062 C T VWA8 Missense_Mutation p.R1204H 0.33 tolerated(0.06) benign(0.021) TCGA-VQ-A91D-01 13 45767822 45767822 T C KCTD4 3'UTR 0.44 TCGA-VQ-A91D-01 13 46055419 46055419 G A COG3 Missense_Mutation p.E202K 0.31 deleterious(0.01) probably_damaging(0.987) TCGA-VQ-A91D-01 13 46099112 46099112 T G COG3 Missense_Mutation p.V719G 0.26 deleterious(0.03) possibly_damaging(0.654) TCGA-VQ-A91D-01 13 50366583 50366583 G A KPNA3 Silent p.R20R 0.08 TCGA-VQ-A91D-01 13 52513206 52513206 G A ATP7B Missense_Mutation p.A1227V 0.42 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 13 52952660 52952660 C T THSD1 Missense_Mutation p.G482E 0.30 deleterious(0.01) possibly_damaging(0.887) TCGA-VQ-A91D-01 13 53216730 53216730 G T HNRNPA1L2 Nonsense_Mutation p.E35* 0.28 TCGA-VQ-A91D-01 13 58208920 58208920 A G PCDH17 Missense_Mutation p.Y747C 0.24 tolerated(0.3) benign(0.414) TCGA-VQ-A91D-01 13 61102778 61102778 G A TDRD3 Silent p.P473P 0.28 TCGA-VQ-A91D-01 13 61987842 61987842 G A PCDH20 Silent p.Y130Y 0.42 TCGA-VQ-A91D-01 13 72440788 72440788 C A DACH1 Silent p.P40P 0.30 TCGA-VQ-A91D-01 13 73312153 73312153 A C BORA Missense_Mutation p.K120N 0.28 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 13 73649862 73649863 GT - KLF5 Frame_Shift_Del p.C405Yfs*14 0.26 TCGA-VQ-A91D-01 13 75866254 75866254 T C TBC1D4 Missense_Mutation p.E1157G 0.30 deleterious(0) probably_damaging(0.998) TCGA-VQ-A91D-01 13 78493591 78493591 G A EDNRB Missense_Mutation p.R54C 0.20 deleterious_low_confidence(0) benign(0.151) TCGA-VQ-A91D-01 13 79176021 79176021 C T POU4F1 Silent p.T263T 0.31 TCGA-VQ-A91D-01 13 84453482 84453482 C - SLITRK1 3'UTR 0.33 TCGA-VQ-A91D-01 13 84453493 84453493 C T SLITRK1 3'UTR 0.29 TCGA-VQ-A91D-01 13 84455347 84455347 G A SLITRK1 Missense_Mutation p.P99L 0.28 tolerated(0.07) benign(0.056) TCGA-VQ-A91D-01 13 95735432 95735432 A - ABCC4 Frame_Shift_Del p.L883Wfs*7 0.30 TCGA-VQ-A91D-01 13 97999309 97999309 G A MBNL2 Silent p.A264A 0.27 TCGA-VQ-A91D-01 13 99020381 99020381 C T FARP1 Silent p.H110H 0.34 TCGA-VQ-A91D-01 13 99554677 99554678 - A DOCK9 Frame_Shift_Ins p.H416Pfs*37 0.14 TCGA-VQ-A91D-01 14 100406438 100406438 C T EML1 Missense_Mutation p.R832C 0.32 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91D-01 14 100615438 100615438 G A DEGS2 Missense_Mutation p.A231V 0.32 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 14 100847464 100847464 G A WDR25 Missense_Mutation p.G68D 0.23 deleterious(0.04) benign(0.232) TCGA-VQ-A91D-01 14 100995459 100995459 G A WDR25 Missense_Mutation p.A443T 0.22 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 14 101200828 101200828 G A DLK1 Silent p.A249A 0.33 TCGA-VQ-A91D-01 14 101200918 101200918 G A DLK1 Silent p.Q279Q 0.34 TCGA-VQ-A91D-01 14 102478672 102478672 C T DYNC1H1 Silent p.G2293G 0.20 TCGA-VQ-A91D-01 14 102732205 102732205 C T MOK Missense_Mutation p.R56H 0.21 deleterious(0.01) probably_damaging(0.988) TCGA-VQ-A91D-01 14 102805451 102805451 C T ZNF839 Silent p.A606A 0.30 TCGA-VQ-A91D-01 14 104642560 104642560 C - KIF26A Frame_Shift_Del p.P1147Lfs*101 0.29 TCGA-VQ-A91D-01 14 105185252 105185252 G A INF2 3'UTR 0.33 TCGA-VQ-A91D-01 14 105409290 105409290 G A AHNAK2 Silent p.D4166D 0.32 TCGA-VQ-A91D-01 14 105414892 105414892 C T AHNAK2 Missense_Mutation p.R2299Q 0.31 benign(0) TCGA-VQ-A91D-01 14 105415107 105415107 G A AHNAK2 Silent p.P2227P 0.31 TCGA-VQ-A91D-01 14 105418265 105418265 C T AHNAK2 Missense_Mutation p.A1175T 0.16 benign(0.009) TCGA-VQ-A91D-01 14 105421318 105421318 G A AHNAK2 Silent p.H209H 0.35 TCGA-VQ-A91D-01 14 105936448 105936448 C T MTA1 Missense_Mutation p.R682C 0.29 deleterious(0) probably_damaging(0.99) TCGA-VQ-A91D-01 14 106053596 106053596 G A IGHA2 Missense_Mutation p.T234M 0.21 deleterious(0) probably_damaging(0.996) TCGA-VQ-A91D-01 14 106173827 106173827 G A IGHA1 Missense_Mutation p.T247M 0.12 deleterious(0) probably_damaging(0.994) TCGA-VQ-A91D-01 14 106237612 106237612 G A IGHG3 Silent p.G44G 0.23 TCGA-VQ-A91D-01 14 106641590 106641590 G A IGHV1-18 Silent p.D108D 0.29 TCGA-VQ-A91D-01 14 107218737 107218737 G A IGHV3-74 Missense_Mutation p.T97M 0.30 tolerated_low_confidence(0.2) benign(0.052) TCGA-VQ-A91D-01 14 20389600 20389601 - C OR4K5 Frame_Shift_Ins p.V281Rfs*12 0.27 TCGA-VQ-A91D-01 14 20825234 20825234 G A PARP2 Missense_Mutation p.D465N 0.21 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 14 20926743 20926743 C A TMEM55B Missense_Mutation p.S277I 0.41 deleterious(0) possibly_damaging(0.803) TCGA-VQ-A91D-01 14 20928373 20928374 - C TMEM55B Frame_Shift_Ins p.I147Dfs*71 0.21 TCGA-VQ-A91D-01 14 21424307 21424307 C T RNASE2 Missense_Mutation p.A126V 0.31 tolerated(0.1) benign(0.072) TCGA-VQ-A91D-01 14 21465034 21465034 T A METTL17 Missense_Mutation p.S477T 0.17 deleterious_low_confidence(0) unknown(0) TCGA-VQ-A91D-01 14 21555165 21555165 C T ARHGEF40 Nonsense_Mutation p.R1382* 0.54 TCGA-VQ-A91D-01 14 21556192 21556192 C - ARHGEF40 Frame_Shift_Del p.H1487Tfs*15 0.28 TCGA-VQ-A91D-01 14 21795857 21795857 A G RPGRIP1 Missense_Mutation p.Y929C 0.23 deleterious(0) probably_damaging(0.997) TCGA-VQ-A91D-01 14 22102289 22102289 T A OR10G2 Missense_Mutation p.D237V 0.28 deleterious(0) possibly_damaging(0.673) TCGA-VQ-A91D-01 14 22363006 22363006 C T TRAV8-4 Missense_Mutation p.S46L 0.34 tolerated(0.32) benign(0.394) TCGA-VQ-A91D-01 14 22447193 22447193 C - TRAV8-6 Frame_Shift_Del p.N60Tfs*8 0.26 TCGA-VQ-A91D-01 14 23588253 23588253 C T CEBPE Silent p.Q16Q 0.36 TCGA-VQ-A91D-01 14 23778068 23778068 C T BCL2L2 Missense_Mutation p.A159V 0.34 tolerated(0.35) benign(0.15) TCGA-VQ-A91D-01 14 23794493 23794494 - A BCL2L2-PABPN1 Frame_Shift_Ins 0.25 TCGA-VQ-A91D-01 14 23866003 23866003 G A MYH6 Missense_Mutation p.A731V 0.27 tolerated(0.2) possibly_damaging(0.863) TCGA-VQ-A91D-01 14 23874857 23874857 G T MYH6 Silent p.R108R 0.35 TCGA-VQ-A91D-01 14 23887483 23887483 C T MYH7 Missense_Mutation p.A1369T 0.09 tolerated(0.09) probably_damaging(0.971) TCGA-VQ-A91D-01 14 24650985 24650985 G A IPO4 Missense_Mutation p.R958C 0.28 tolerated(0.08) possibly_damaging(0.601) TCGA-VQ-A91D-01 14 24798608 24798608 C T ADCY4 Missense_Mutation p.R450Q 0.21 deleterious(0.04) benign(0.004) TCGA-VQ-A91D-01 14 24799486 24799486 G A ADCY4 Missense_Mutation p.R316W 0.12 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 14 24845679 24845679 C T NFATC4 Missense_Mutation p.P809S 0.44 tolerated_low_confidence(0.19) possibly_damaging(0.878) TCGA-VQ-A91D-01 14 24975330 24975330 T C CMA1 Silent p.R168R 0.35 TCGA-VQ-A91D-01 14 36004603 36004603 C - INSM2 Frame_Shift_Del p.P383Rfs*8 0.20 TCGA-VQ-A91D-01 14 36008896 36008896 C T RALGAPA1 Missense_Mutation p.G2035D 0.29 deleterious(0.02) possibly_damaging(0.663) TCGA-VQ-A91D-01 14 38266010 38266010 C A TTC6 Missense_Mutation p.P1296H 0.31 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 14 39536392 39536392 A G SEC23A Silent p.G404G 0.34 TCGA-VQ-A91D-01 14 39627532 39627532 G A TRAPPC6B Missense_Mutation p.T75M 0.34 tolerated(0.09) possibly_damaging(0.688) TCGA-VQ-A91D-01 14 45497475 45497476 - A FAM179B Frame_Shift_Ins p.N1203Kfs*12 0.33 TCGA-VQ-A91D-01 14 45646071 45646071 A C FANCM Silent p.R1372R 0.35 TCGA-VQ-A91D-01 14 47121001 47121001 G A RPL10L 5'UTR 0.39 TCGA-VQ-A91D-01 14 50605364 50605364 T C SOS2 Missense_Mutation p.Q975R 0.35 deleterious(0.01) probably_damaging(1) TCGA-VQ-A91D-01 14 50649290 50649290 A T SOS2 Missense_Mutation p.I250K 0.38 deleterious(0) probably_damaging(0.976) TCGA-VQ-A91D-01 14 52509034 52509034 G A NID2 Silent p.G538G 0.33 TCGA-VQ-A91D-01 14 53513449 53513480 AAATCAGTTTTAGGCCATTCATGTCCTTCAAG TCAGTTTTAGGCCATTCATGTCCTTCA DDHD1 3'UTR 0.17 TCGA-VQ-A91D-01 14 55611911 55611912 - A LGALS3 Frame_Shift_Ins p.L228Tfs*3 0.27 TCGA-VQ-A91D-01 14 62213825 62213825 T - HIF1A 3'UTR 0.20 TCGA-VQ-A91D-01 14 64408455 64408455 A - SYNE2 Frame_Shift_Del p.K63Rfs*9 0.23 TCGA-VQ-A91D-01 14 64630230 64630230 C G SYNE2 Silent p.G5470G 0.29 TCGA-VQ-A91D-01 14 64635651 64635651 G T SYNE2 Missense_Mutation p.Q5654H 0.43 probably_damaging(0.999) TCGA-VQ-A91D-01 14 64637178 64637178 A C SYNE2 Missense_Mutation p.K5745Q 0.33 probably_damaging(0.917) TCGA-VQ-A91D-01 14 64935598 64935598 T C AKAP5 Silent p.D162D 0.28 TCGA-VQ-A91D-01 14 65008301 65008301 C T HSPA2 Missense_Mutation p.A245V 0.33 tolerated_low_confidence(1) benign(0.001) TCGA-VQ-A91D-01 14 65417577 65417577 G A RAB15 Intron 0.32 TCGA-VQ-A91D-01 14 67147861 67147861 G A GPHN Missense_Mutation p.R34H 0.31 deleterious(0.03) probably_damaging(0.977) TCGA-VQ-A91D-01 14 68048797 68048797 G A PLEKHH1 Missense_Mutation p.R1099H 0.30 deleterious(0.01) probably_damaging(0.943) TCGA-VQ-A91D-01 14 68050581 68050581 G C PLEKHH1 Missense_Mutation p.A1184P 0.35 deleterious(0.04) benign(0.02) TCGA-VQ-A91D-01 14 69847232 69847232 C - ERH 3'UTR 0.29 TCGA-VQ-A91D-01 14 70925343 70925343 C A ADAM21 Missense_Mutation p.T376N 0.33 deleterious(0) possibly_damaging(0.491) TCGA-VQ-A91D-01 14 72138079 72138079 G A SIPA1L1 Silent p.P833P 0.38 TCGA-VQ-A91D-01 14 72939581 72939581 A T RGS6 Missense_Mutation p.I180F 0.06 deleterious(0) benign(0.14) TCGA-VQ-A91D-01 14 73441648 73441648 G A ZFYVE1 Missense_Mutation p.T609M 0.34 tolerated(0.11) benign(0.047) TCGA-VQ-A91D-01 14 73730455 73730455 C A PAPLN Silent p.A915A 0.37 TCGA-VQ-A91D-01 14 74345803 74345803 G A PTGR2 Missense_Mutation p.G175D 0.37 deleterious(0) probably_damaging(0.97) TCGA-VQ-A91D-01 14 74968147 74968147 C T LTBP2 Missense_Mutation p.V1773I 0.07 tolerated(0.49) probably_damaging(0.994) TCGA-VQ-A91D-01 14 75355992 75355992 A G DLST Missense_Mutation p.T72A 0.31 deleterious(0.02) possibly_damaging(0.527) TCGA-VQ-A91D-01 14 75505046 75505046 C T MLH3 Missense_Mutation p.A1214T 0.37 tolerated(0.26) benign(0.034) TCGA-VQ-A91D-01 14 77297650 77297650 T C C14orf166B Missense_Mutation p.S108P 0.14 tolerated(0.96) benign(0.002) TCGA-VQ-A91D-01 14 77492914 77492914 C T IRF2BPL Missense_Mutation p.V408I 0.30 tolerated(0.11) unknown(0) TCGA-VQ-A91D-01 14 77732918 77732918 G A NGB Silent p.A139A 0.31 TCGA-VQ-A91D-01 14 78399663 78399663 C T ADCK1 Missense_Mutation p.R501C 0.31 tolerated(0.2) benign(0.013) TCGA-VQ-A91D-01 14 79746780 79746780 C T NRXN3 Intron 0.26 TCGA-VQ-A91D-01 14 86089102 86089103 AA - FLRT2 Frame_Shift_Del p.R416Sfs*7 0.22 TCGA-VQ-A91D-01 14 88406276 88406276 T - GALC Frame_Shift_Del p.K628Nfs*7 0.26 TCGA-VQ-A91D-01 14 88477297 88477298 - TG GPR65 Frame_Shift_Ins p.S39Cfs*12 0.36 TCGA-VQ-A91D-01 14 88962763 88962763 C T PTPN21 Missense_Mutation p.C309Y 0.32 tolerated(0.05) probably_damaging(0.942) TCGA-VQ-A91D-01 14 90650719 90650719 T A KCNK13 Missense_Mutation p.I200N 0.07 deleterious(0) probably_damaging(0.994) TCGA-VQ-A91D-01 14 91155935 91155935 T - TTC7B Frame_Shift_Del p.N300Tfs*34 0.12 TCGA-VQ-A91D-01 14 94046589 94046589 G - UNC79 Frame_Shift_Del p.G668Dfs*34 0.27 TCGA-VQ-A91D-01 14 94088050 94088050 A - UNC79 Frame_Shift_Del p.K1316Sfs*12 0.31 TCGA-VQ-A91D-01 14 95590580 95590580 G A DICER1 Silent p.C443C 0.29 TCGA-VQ-A91D-01 14 96178689 96178689 G A TCL1A Silent p.D55D 0.38 TCGA-VQ-A91D-01 15 101109802 101109802 A G LINS Missense_Mutation p.S639P 0.09 tolerated(0.12) benign(0.013) TCGA-VQ-A91D-01 15 101113824 101113824 A C LINS Intron 0.20 TCGA-VQ-A91D-01 15 101550782 101550782 G A LRRK1 Missense_Mutation p.A373T 0.35 tolerated(0.45) benign(0.014) TCGA-VQ-A91D-01 15 101593534 101593534 G A LRRK1 Silent p.A1321A 0.36 TCGA-VQ-A91D-01 15 101719079 101719079 T - CHSY1 Frame_Shift_Del p.N308Tfs*13 0.25 TCGA-VQ-A91D-01 15 102346352 102346352 T - OR4F6 Frame_Shift_Del p.L145* 0.27 TCGA-VQ-A91D-01 15 102358512 102358512 A T OR4F15 Silent p.G41G 0.14 TCGA-VQ-A91D-01 15 22332504 22332505 - T RP11-69H14.6 RNA 0.13 TCGA-VQ-A91D-01 15 22473148 22473148 G A IGHV4OR15-8 Silent p.C41C 0.14 TCGA-VQ-A91D-01 15 22849052 22849052 G T TUBGCP5 Missense_Mutation p.A367S 0.24 tolerated(0.1) possibly_damaging(0.896) TCGA-VQ-A91D-01 15 23002936 23002936 A C CYFIP1 Missense_Mutation p.T1220P 0.26 deleterious(0.02) benign(0.116) TCGA-VQ-A91D-01 15 23812358 23812358 C T MKRN3 Missense_Mutation p.R477W 0.25 tolerated(0.09) benign(0.004) TCGA-VQ-A91D-01 15 24921813 24921813 G A NPAP1 Missense_Mutation p.V267I 0.33 tolerated(0.16) benign(0.05) TCGA-VQ-A91D-01 15 24922855 24922855 C T NPAP1 Missense_Mutation p.P614L 0.23 deleterious(0.01) benign(0.132) TCGA-VQ-A91D-01 15 25455130 25455130 G C SNORD115-22 RNA 0.08 TCGA-VQ-A91D-01 15 25925113 25925113 A G ATP10A Missense_Mutation p.F1292S 0.35 deleterious(0.02) benign(0.006) TCGA-VQ-A91D-01 15 28479399 28479399 G A HERC2 Silent p.G1345G 0.36 TCGA-VQ-A91D-01 15 28479400 28479400 C T HERC2 Missense_Mutation p.G1345D 0.24 probably_damaging(0.963) TCGA-VQ-A91D-01 15 29398963 29398963 T A APBA2 Missense_Mutation p.S620T 0.34 deleterious(0.05) benign(0.087) TCGA-VQ-A91D-01 15 30011111 30011111 G A TJP1 Nonsense_Mutation p.R1079* 0.28 TCGA-VQ-A91D-01 15 30065468 30065468 C T TJP1 Silent p.V59V 0.29 TCGA-VQ-A91D-01 15 32393543 32393543 T C CHRNA7 Missense_Mutation p.L107P 0.28 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91D-01 15 32928546 32928548 TAA - ARHGAP11A In_Frame_Del p.N526del 0.26 TCGA-VQ-A91D-01 15 34394897 34394897 C T PGBD4 Silent p.S55S 0.40 TCGA-VQ-A91D-01 15 34445168 34445168 T - KATNBL1 Frame_Shift_Del p.K87Nfs*77 0.22 TCGA-VQ-A91D-01 15 34549916 34549916 A - SLC12A6 Frame_Shift_Del p.L206Yfs*28 0.20 TCGA-VQ-A91D-01 15 34628900 34628900 A - SLC12A6 5'UTR 0.26 TCGA-VQ-A91D-01 15 34649902 34649902 A - NUTM1 3'UTR 0.39 TCGA-VQ-A91D-01 15 39881164 39881164 A G THBS1 Silent p.G550G 0.29 TCGA-VQ-A91D-01 15 40509817 40509817 A G BUB1B Silent p.V933V 0.09 TCGA-VQ-A91D-01 15 41011076 41011076 G A RAD51 Missense_Mutation p.R171Q 0.38 deleterious(0) probably_damaging(0.99) TCGA-VQ-A91D-01 15 41023302 41023302 G A RAD51 Missense_Mutation p.D317N 0.32 deleterious(0) possibly_damaging(0.805) TCGA-VQ-A91D-01 15 42059170 42059170 C - MGA Frame_Shift_Del p.T2966Pfs*4 0.33 TCGA-VQ-A91D-01 15 42371921 42371921 C T PLA2G4D Silent p.S377S 0.27 TCGA-VQ-A91D-01 15 42703501 42703501 T C CAPN3 Silent p.F799F 0.41 TCGA-VQ-A91D-01 15 42704001 42704001 G T CAPN3 3'UTR 0.36 TCGA-VQ-A91D-01 15 43545807 43545807 C T TGM5 Missense_Mutation p.C194Y 0.23 deleterious(0) possibly_damaging(0.736) TCGA-VQ-A91D-01 15 43577010 43577010 A C TGM7 Splice_Site p.X335_splice 0.31 TCGA-VQ-A91D-01 15 43813534 43813534 C T MAP1A 5'UTR 0.16 TCGA-VQ-A91D-01 15 43821432 43821433 AG - MAP1A Frame_Shift_Del p.E2588Vfs*46 0.27 TCGA-VQ-A91D-01 15 45003781 45003782 CT - B2M Frame_Shift_Del p.L15Ffs*41 0.41 TCGA-VQ-A91D-01 15 45258437 45258437 A G C15orf43 Missense_Mutation p.K144E 0.33 tolerated(0.98) benign(0.002) TCGA-VQ-A91D-01 15 48056878 48056878 A G SEMA6D Missense_Mutation p.T381A 0.06 deleterious(0.03) benign(0.018) TCGA-VQ-A91D-01 15 48062710 48062710 C T SEMA6D Silent p.V650V 0.27 TCGA-VQ-A91D-01 15 48789544 48789544 T A FBN1 Missense_Mutation p.I738F 0.21 benign(0.425) TCGA-VQ-A91D-01 15 50193368 50193368 T - ATP8B4 Frame_Shift_Del p.K737Sfs*10 0.31 TCGA-VQ-A91D-01 15 50521239 50521239 G T SLC27A2 Missense_Mutation p.D519Y 0.41 deleterious(0.01) benign(0.001) TCGA-VQ-A91D-01 15 50581735 50581735 A G GABPB1 Silent p.I288I 0.24 TCGA-VQ-A91D-01 15 51834634 51834634 A G DMXL2 Missense_Mutation p.L334S 0.24 tolerated(0.32) benign(0.419) TCGA-VQ-A91D-01 15 51839452 51839452 G A DMXL2 Missense_Mutation p.R241C 0.43 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91D-01 15 52427845 52427845 C G GNB5 Missense_Mutation p.A246P 0.29 tolerated(0.11) probably_damaging(0.996) TCGA-VQ-A91D-01 15 52497184 52497184 G A MYO5C Silent p.G1566G 0.33 TCGA-VQ-A91D-01 15 52901859 52901859 C T FAM214A Missense_Mutation p.V418M 0.32 tolerated(0.07) benign(0.068) TCGA-VQ-A91D-01 15 53081624 53081624 C A ONECUT1 Missense_Mutation p.R153L 0.27 deleterious(0) probably_damaging(0.989) TCGA-VQ-A91D-01 15 54306892 54306892 T C UNC13C Missense_Mutation p.Y598H 0.32 tolerated_low_confidence(0.12) benign(0.005) TCGA-VQ-A91D-01 15 55621921 55621922 - T PIGB Frame_Shift_Ins p.C177Lfs*79 0.31 TCGA-VQ-A91D-01 15 55839100 55839100 C T PYGO1 Silent p.Q127Q 0.25 TCGA-VQ-A91D-01 15 55912892 55912892 A - PRTG Frame_Shift_Del p.F1056Sfs*30 0.32 TCGA-VQ-A91D-01 15 57565319 57565319 C T TCF12 Missense_Mutation p.R613C 0.31 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91D-01 15 60298078 60298078 G A FOXB1 Missense_Mutation p.A306T 0.42 tolerated_low_confidence(0.38) benign(0.045) TCGA-VQ-A91D-01 15 60641383 60641383 C T ANXA2 Missense_Mutation p.R302Q 0.40 tolerated(0.08) benign(0.002) TCGA-VQ-A91D-01 15 63631052 63631052 G A CA12 Silent p.F280F 0.27 TCGA-VQ-A91D-01 15 63970404 63970405 - T HERC1 Frame_Shift_Ins p.M2237Nfs*9 0.33 TCGA-VQ-A91D-01 15 64017607 64017607 C T HERC1 Missense_Mutation p.R1151Q 0.25 benign(0.004) TCGA-VQ-A91D-01 15 65208028 65208028 G A ANKDD1A Missense_Mutation p.A23T 0.41 deleterious(0.01) possibly_damaging(0.639) TCGA-VQ-A91D-01 15 65347093 65347093 A G RASL12 3'UTR 0.30 TCGA-VQ-A91D-01 15 65499319 65499319 G A CILP Silent p.D75D 0.28 TCGA-VQ-A91D-01 15 65792977 65792977 A T DPP8 Nonsense_Mutation p.Y187* 0.46 TCGA-VQ-A91D-01 15 65994218 65994218 C T DENND4A Missense_Mutation p.R814H 0.33 deleterious(0) probably_damaging(0.993) TCGA-VQ-A91D-01 15 66795649 66795649 A G RPL4 Intron 0.11 TCGA-VQ-A91D-01 15 68486259 68486259 T C CALML4 3'UTR 0.56 TCGA-VQ-A91D-01 15 69072455 69072455 G A ANP32A Nonsense_Mutation p.R239* 0.12 TCGA-VQ-A91D-01 15 69238320 69238320 G A SPESP1 Silent p.P149P 0.35 TCGA-VQ-A91D-01 15 69324036 69324036 G A NOX5 Silent p.Q168Q 0.26 TCGA-VQ-A91D-01 15 69548303 69548303 A - GLCE Frame_Shift_Del p.R55Efs*11 0.32 TCGA-VQ-A91D-01 15 70959926 70959926 A C UACA Missense_Mutation p.L1033V 0.21 deleterious(0.02) probably_damaging(0.997) TCGA-VQ-A91D-01 15 71549024 71549024 C T THSD4 Missense_Mutation p.R329W 0.29 deleterious(0) possibly_damaging(0.798) TCGA-VQ-A91D-01 15 72494862 72494862 C T PKM Intron 0.41 TCGA-VQ-A91D-01 15 72642929 72642929 G A HEXA Silent p.Y245Y 0.39 TCGA-VQ-A91D-01 15 73590719 73590719 C - NEO1 Frame_Shift_Del p.M1312Cfs*48 0.27 TCGA-VQ-A91D-01 15 73622101 73622101 G A HCN4 Missense_Mutation p.A468V 0.33 deleterious(0.01) unknown(0) TCGA-VQ-A91D-01 15 74467609 74467610 - C ISLR Frame_Shift_Ins p.R139Pfs*120 0.28 TCGA-VQ-A91D-01 15 74884116 74884116 G A ARID3B Missense_Mutation p.A461T 0.45 tolerated(0.24) probably_damaging(0.999) TCGA-VQ-A91D-01 15 74912558 74912558 G A CLK3 Missense_Mutation p.A269T 0.12 tolerated(0.14) benign(0.013) TCGA-VQ-A91D-01 15 75641275 75641275 C T NEIL1 Missense_Mutation p.A10V 0.10 deleterious(0) probably_damaging(0.988) TCGA-VQ-A91D-01 15 75687146 75687146 G A SIN3A Nonsense_Mutation p.R718* 0.33 TCGA-VQ-A91D-01 15 77287839 77287839 C T PSTPIP1 5'UTR 0.38 TCGA-VQ-A91D-01 15 77425746 77425747 TC - PEAK1 Frame_Shift_Del p.R1226Tfs*18 0.25 TCGA-VQ-A91D-01 15 77906905 77906905 G A LINGO1 Silent p.A448A 0.50 TCGA-VQ-A91D-01 15 79058107 79058107 G A ADAMTS7 Silent p.P1382P 0.19 TCGA-VQ-A91D-01 15 79614378 79614378 C T TMED3 Missense_Mutation p.T159M 0.39 deleterious(0) benign(0.273) TCGA-VQ-A91D-01 15 81188381 81188381 C A KIAA1199 Missense_Mutation p.P464H 0.26 tolerated(0.09) benign(0.372) TCGA-VQ-A91D-01 15 81592755 81592755 G A IL16 Missense_Mutation p.E1030K 0.30 tolerated(0.14) benign(0.158) TCGA-VQ-A91D-01 15 82335514 82335514 C T MEX3B Missense_Mutation p.R566H 0.11 tolerated(0.24) probably_damaging(0.98) TCGA-VQ-A91D-01 15 83926218 83926218 G A BNC1 Silent p.A987A 0.20 TCGA-VQ-A91D-01 15 83933020 83933020 A G BNC1 Missense_Mutation p.I328T 0.35 tolerated(0.44) benign(0.001) TCGA-VQ-A91D-01 15 86287023 86287025 AAG - AKAP13 In_Frame_Del p.K2792del 0.12 TCGA-VQ-A91D-01 15 88678559 88678559 C T NTRK3 Missense_Mutation p.R326H 0.28 tolerated(0.14) benign(0.022) TCGA-VQ-A91D-01 15 88727500 88727500 C T NTRK3 Silent p.T93T 0.39 TCGA-VQ-A91D-01 15 89833441 89833441 T A FANCI Intron 0.10 TCGA-VQ-A91D-01 15 89860735 89860735 T G POLG Missense_Mutation p.D1172A 0.34 deleterious(0) probably_damaging(0.96) TCGA-VQ-A91D-01 15 90039664 90039664 C T RHCG Missense_Mutation p.A38T 0.33 tolerated(0.1) benign(0.02) TCGA-VQ-A91D-01 15 90171904 90171904 G - KIF7 Frame_Shift_Del p.R1260Afs*16 0.28 TCGA-VQ-A91D-01 15 90904600 90904600 G A ZNF774 3'UTR 0.17 TCGA-VQ-A91D-01 15 90976994 90976994 T C IQGAP1 Missense_Mutation p.M145T 0.30 deleterious(0) probably_damaging(0.997) TCGA-VQ-A91D-01 15 91027572 91027572 C T IQGAP1 Silent p.I1303I 0.32 TCGA-VQ-A91D-01 15 91423441 91423441 T C FURIN Silent p.R498R 0.34 TCGA-VQ-A91D-01 15 91425057 91425057 C T FURIN Silent p.D778D 0.31 TCGA-VQ-A91D-01 15 91432760 91432760 G A FES Missense_Mutation p.V274I 0.39 tolerated(0.6) benign(0) TCGA-VQ-A91D-01 15 99512739 99512739 G T PGPEP1L Missense_Mutation p.L96M 0.30 tolerated(0.08) benign(0.196) TCGA-VQ-A91D-01 16 10525018 10525018 C T ATF7IP2 Missense_Mutation p.P181S 0.32 tolerated(0.3) benign(0.359) TCGA-VQ-A91D-01 16 11001931 11001931 T C CIITA Missense_Mutation p.L861P 0.27 deleterious(0) probably_damaging(0.997) TCGA-VQ-A91D-01 16 11017143 11017143 C T CIITA Missense_Mutation p.R1126W 0.29 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 16 1129275 1129275 A T SSTR5 Missense_Mutation p.D136V 0.16 deleterious(0) probably_damaging(0.996) TCGA-VQ-A91D-01 16 12798725 12798725 G A CPPED1 Silent p.G157G 0.36 TCGA-VQ-A91D-01 16 1400884 1400884 G A TSR3 Silent p.A150A 0.35 TCGA-VQ-A91D-01 16 15212811 15212811 G A RP11-1186N24.5 RNA 0.06 TCGA-VQ-A91D-01 16 1550585 1550585 C T TELO2 Missense_Mutation p.A389V 0.48 tolerated(0.07) benign(0.003) TCGA-VQ-A91D-01 16 15698201 15698201 G A KIAA0430 Nonsense_Mutation p.R1413* 0.34 TCGA-VQ-A91D-01 16 15808819 15808819 C T MYH11 Silent p.T1918T 0.31 TCGA-VQ-A91D-01 16 15820795 15820797 CTT - MYH11 In_Frame_Del p.K1263del 0.26 TCGA-VQ-A91D-01 16 16225647 16225647 C T ABCC1 Missense_Mutation p.A1274V 0.44 deleterious(0) possibly_damaging(0.625) TCGA-VQ-A91D-01 16 1637270 1637270 A T IFT140 Missense_Mutation p.L313Q 0.31 deleterious(0) probably_damaging(0.986) TCGA-VQ-A91D-01 16 1642204 1642204 G A IFT140 Silent p.L203L 0.27 TCGA-VQ-A91D-01 16 17228332 17228332 G A XYLT1 Silent p.C675C 0.38 TCGA-VQ-A91D-01 16 17228372 17228372 C T XYLT1 Missense_Mutation p.R662Q 0.25 tolerated(0.12) possibly_damaging(0.643) TCGA-VQ-A91D-01 16 17235113 17235113 C T XYLT1 Nonsense_Mutation p.W495* 0.12 TCGA-VQ-A91D-01 16 17294394 17294394 C T XYLT1 Missense_Mutation p.R344H 0.27 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 16 19234381 19234381 G - SYT17 Frame_Shift_Del p.E324Sfs*6 0.23 TCGA-VQ-A91D-01 16 19883242 19883242 T C GPRC5B Missense_Mutation p.D309G 0.35 tolerated(0.11) probably_damaging(0.998) TCGA-VQ-A91D-01 16 1995921 1995921 G T RPL3L Missense_Mutation p.P321H 0.26 tolerated(0.1) probably_damaging(0.97) TCGA-VQ-A91D-01 16 2017310 2017310 T C RNF151 Silent p.P13P 0.31 TCGA-VQ-A91D-01 16 2041990 2041990 G A SYNGR3 Missense_Mutation p.V39I 0.36 tolerated(0.11) possibly_damaging(0.603) TCGA-VQ-A91D-01 16 2136258 2136258 C T TSC2 Missense_Mutation p.T1576M 0.30 deleterious(0.03) benign(0.271) TCGA-VQ-A91D-01 16 2138462 2138462 G A TSC2 Missense_Mutation p.A1759T 0.35 tolerated(0.68) benign(0) TCGA-VQ-A91D-01 16 21416253 21416253 G A NPIPB3 Missense_Mutation p.A152V 0.21 probably_damaging(0.99) TCGA-VQ-A91D-01 16 2282899 2282899 C T E4F1 Silent p.D291D 0.27 TCGA-VQ-A91D-01 16 2338031 2338031 C T ABCA3 Silent p.V1000V 0.14 TCGA-VQ-A91D-01 16 23391895 23391895 C T SCNN1B Nonsense_Mutation p.R566* 0.33 TCGA-VQ-A91D-01 16 2358613 2358613 C T ABCA3 Missense_Mutation p.A375T 0.31 tolerated(0.54) benign(0.264) TCGA-VQ-A91D-01 16 23641431 23641431 A G PALB2 Missense_Mutation p.S682P 0.06 deleterious(0.01) possibly_damaging(0.735) TCGA-VQ-A91D-01 16 23700918 23700918 A G PLK1 Missense_Mutation p.Y510C 0.42 tolerated(0.06) benign(0.431) TCGA-VQ-A91D-01 16 2578062 2578062 G A AMDHD2 Silent p.G210G 0.21 TCGA-VQ-A91D-01 16 27480737 27480737 C T GTF3C1 Missense_Mutation p.G1650D 0.33 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 16 27503980 27503980 C T GTF3C1 Silent p.L977L 0.27 TCGA-VQ-A91D-01 16 27523085 27523085 G A GTF3C1 Nonsense_Mutation p.Q371* 0.21 TCGA-VQ-A91D-01 16 28331612 28331612 G T SBK1 Silent p.T215T 0.24 TCGA-VQ-A91D-01 16 2868811 2868811 C A PRSS21 Missense_Mutation p.L131M 0.10 tolerated(0.25) benign(0.439) TCGA-VQ-A91D-01 16 28856790 28856790 C A TUFM Nonsense_Mutation p.G87* 0.43 TCGA-VQ-A91D-01 16 28916321 28916321 C A RABEP2 Silent p.V551V 0.16 TCGA-VQ-A91D-01 16 2903146 2903146 C - PRSS22 Frame_Shift_Del p.G301Vfs*113 0.27 TCGA-VQ-A91D-01 16 29820130 29820130 G A MAZ Intron 0.47 TCGA-VQ-A91D-01 16 30536081 30536081 G A ZNF768 Silent p.P460P 0.40 TCGA-VQ-A91D-01 16 30745076 30745076 C T SRCAP Missense_Mutation p.R2151C 0.29 probably_damaging(0.995) TCGA-VQ-A91D-01 16 30749664 30749664 G A SRCAP Missense_Mutation p.R2768Q 0.29 unknown(0) TCGA-VQ-A91D-01 16 30903965 30903965 G A BCL7C Silent p.A128A 0.40 TCGA-VQ-A91D-01 16 30964937 30964937 C A ORAI3 Silent p.S220S 0.06 TCGA-VQ-A91D-01 16 31090221 31090221 C T ZNF646 Missense_Mutation p.S859F 0.31 deleterious(0.01) probably_damaging(0.996) TCGA-VQ-A91D-01 16 31230628 31230628 C T TRIM72 Missense_Mutation p.R169W 0.28 deleterious(0) possibly_damaging(0.724) TCGA-VQ-A91D-01 16 31309201 31309203 GAG - ITGAM In_Frame_Del p.E547del 0.27 TCGA-VQ-A91D-01 16 31374259 31374259 G A ITGAX Missense_Mutation p.G455S 0.35 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91D-01 16 31383748 31383748 C T ITGAX Missense_Mutation p.T737M 0.33 deleterious(0.04) possibly_damaging(0.739) TCGA-VQ-A91D-01 16 32266266 32266266 C A TP53TG3D 3'UTR 0.29 TCGA-VQ-A91D-01 16 333279 333279 A G PDIA2 Missense_Mutation p.E37G 0.32 tolerated(0.07) benign(0) TCGA-VQ-A91D-01 16 3740907 3740907 T C TRAP1 Silent p.G56G 0.49 TCGA-VQ-A91D-01 16 3781890 3781890 T - CREBBP Frame_Shift_Del p.T1593Pfs*42 0.29 TCGA-VQ-A91D-01 16 3786681 3786681 C T CREBBP Silent p.A1510A 0.27 TCGA-VQ-A91D-01 16 3817721 3817721 T - CREBBP Frame_Shift_Del p.I1084Sfs*15 0.31 TCGA-VQ-A91D-01 16 3820835 3820835 C T CREBBP Silent p.T872T 0.29 TCGA-VQ-A91D-01 16 396838 396838 C T AXIN1 Missense_Mutation p.R63H 0.41 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91D-01 16 4016606 4016606 C T ADCY9 Missense_Mutation p.G1078S 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A91D-01 16 4311886 4311886 G A TFAP4 Missense_Mutation p.P140L 0.31 deleterious(0.02) benign(0.026) TCGA-VQ-A91D-01 16 46695735 46695735 T - VPS35 Frame_Shift_Del p.A703Lfs*2 0.24 TCGA-VQ-A91D-01 16 46962998 46962998 C T GPT2 3'UTR 0.20 TCGA-VQ-A91D-01 16 4723519 4723519 C T MGRN1 Silent p.S272S 0.25 TCGA-VQ-A91D-01 16 4752125 4752125 G A ANKS3 Silent p.S329S 0.20 TCGA-VQ-A91D-01 16 48226486 48226486 A - ABCC11 Frame_Shift_Del p.F884Sfs*25 0.23 TCGA-VQ-A91D-01 16 48290583 48290583 T A LONP2 Missense_Mutation p.S177R 0.41 deleterious(0) possibly_damaging(0.724) TCGA-VQ-A91D-01 16 4935221 4935221 G A PPL Silent p.R1145R 0.26 TCGA-VQ-A91D-01 16 50263185 50263185 T G PAPD5 Missense_Mutation p.H681Q 0.44 tolerated_low_confidence(0.11) benign(0.119) TCGA-VQ-A91D-01 16 50344781 50344781 G A ADCY7 Missense_Mutation p.G782S 0.45 tolerated(0.44) benign(0.003) TCGA-VQ-A91D-01 16 50745399 50745399 C - NOD2 Frame_Shift_Del p.P528Qfs*235 0.25 TCGA-VQ-A91D-01 16 5134728 5134728 C T FAM86A 3'UTR 0.32 TCGA-VQ-A91D-01 16 53513900 53513900 A G RBL2 Missense_Mutation p.R960G 0.41 tolerated(0.4) benign(0.173) TCGA-VQ-A91D-01 16 53907748 53907748 C T FTO Missense_Mutation p.R316W 0.36 deleterious(0) probably_damaging(0.998) TCGA-VQ-A91D-01 16 54967355 54967355 C T IRX5 Missense_Mutation p.A341V 0.30 deleterious(0) unknown(0) TCGA-VQ-A91D-01 16 55690565 55690565 G A SLC6A2 5'UTR 0.31 TCGA-VQ-A91D-01 16 56226179 56226179 C T GNAO1 Missense_Mutation p.A11V 0.21 tolerated(0.1) benign(0.073) TCGA-VQ-A91D-01 16 56396967 56396967 G A AMFR Missense_Mutation p.R596C 0.38 deleterious(0) possibly_damaging(0.604) TCGA-VQ-A91D-01 16 56867231 56867231 C T NUP93 Missense_Mutation p.R484W 0.33 tolerated(0.12) benign(0.043) TCGA-VQ-A91D-01 16 56872944 56872944 A G NUP93 Missense_Mutation p.D700G 0.45 deleterious(0.02) possibly_damaging(0.711) TCGA-VQ-A91D-01 16 56913480 56913480 G A SLC12A3 Silent p.A454A 0.26 TCGA-VQ-A91D-01 16 56917997 56917997 C T SLC12A3 Missense_Mutation p.A569V 0.43 tolerated(1) benign(0.008) TCGA-VQ-A91D-01 16 57007359 57007359 G A CETP Silent p.S289S 0.31 TCGA-VQ-A91D-01 16 57155016 57155016 C T CPNE2 Silent p.Y231Y 0.39 TCGA-VQ-A91D-01 16 57507883 57507883 A G DOK4 Missense_Mutation p.V223A 0.19 deleterious(0) probably_damaging(0.994) TCGA-VQ-A91D-01 16 58019154 58019154 G A TEPP Missense_Mutation p.V224M 0.27 deleterious(0.02) benign(0.157) TCGA-VQ-A91D-01 16 58292411 58292411 A T CCDC113 Missense_Mutation p.D177V 0.17 deleterious(0) probably_damaging(0.957) TCGA-VQ-A91D-01 16 58437229 58437229 G A GINS3 Silent p.L177L 0.33 TCGA-VQ-A91D-01 16 61851597 61851597 C T CDH8 Missense_Mutation p.V355I 0.30 tolerated(0.41) possibly_damaging(0.536) TCGA-VQ-A91D-01 16 66600543 66600543 A G CMTM1 Missense_Mutation p.N43D 0.29 tolerated(0.8) benign(0) TCGA-VQ-A91D-01 16 66887494 66887494 G A CA7 3'UTR 0.47 TCGA-VQ-A91D-01 16 67203250 67203250 A G HSF4 Silent p.P441P 0.38 TCGA-VQ-A91D-01 16 67221598 67221598 C T EXOC3L1 Silent p.G190G 0.41 TCGA-VQ-A91D-01 16 67271200 67271200 C T FHOD1 Missense_Mutation p.R312H 0.23 deleterious(0.02) benign(0) TCGA-VQ-A91D-01 16 67315943 67315943 C T PLEKHG4 Missense_Mutation p.A346V 0.37 tolerated(0.29) benign(0.002) TCGA-VQ-A91D-01 16 67660551 67660551 A C CTCF Missense_Mutation p.Q484P 0.38 deleterious(0.01) probably_damaging(0.998) TCGA-VQ-A91D-01 16 677527 677527 G A RAB40C Missense_Mutation p.G251S 0.28 tolerated_low_confidence(0.6) benign(0.008) TCGA-VQ-A91D-01 16 67863372 67863372 G A CENPT Nonsense_Mutation p.R412* 0.41 TCGA-VQ-A91D-01 16 67902440 67902440 G A NUTF2 Missense_Mutation p.A70T 0.29 tolerated(0.46) benign(0.019) TCGA-VQ-A91D-01 16 68112958 68112958 A G DUS2 3'UTR 0.29 TCGA-VQ-A91D-01 16 68265437 68265438 - C ESRP2 Frame_Shift_Ins p.E487Gfs*5 0.23 TCGA-VQ-A91D-01 16 68289880 68289880 C T PLA2G15 Silent p.R238R 0.35 TCGA-VQ-A91D-01 16 68335255 68335255 G T SLC7A6OS Silent p.R285R 0.27 TCGA-VQ-A91D-01 16 68390638 68390638 G T PRMT7 Nonsense_Mutation p.E616* 0.25 TCGA-VQ-A91D-01 16 69167476 69167476 C T CIRH1A Silent p.G38G 0.29 TCGA-VQ-A91D-01 16 69368857 69368857 A G COG8 Missense_Mutation p.L327P 0.31 deleterious(0) probably_damaging(0.996) TCGA-VQ-A91D-01 16 70432269 70432269 G A ST3GAL2 Silent p.A55A 0.38 TCGA-VQ-A91D-01 16 70502853 70502853 C T FUK Silent p.S255S 0.27 TCGA-VQ-A91D-01 16 70698147 70698147 G - MTSS1L Frame_Shift_Del p.G560Afs*34 0.30 TCGA-VQ-A91D-01 16 70778435 70778435 G - VAC14 Frame_Shift_Del p.A474Qfs*33 0.28 TCGA-VQ-A91D-01 16 71715773 71715773 C T PHLPP2 Silent p.S257S 0.32 TCGA-VQ-A91D-01 16 72158732 72158732 C A PMFBP1 Missense_Mutation p.E841D 0.36 deleterious(0.03) possibly_damaging(0.477) TCGA-VQ-A91D-01 16 728037 728037 C - RHBDL1 Frame_Shift_Del p.P436Hfs*? 0.44 TCGA-VQ-A91D-01 16 72829812 72829812 A T ZFHX3 Missense_Mutation p.L2257I 0.08 probably_damaging(0.987) TCGA-VQ-A91D-01 16 72830618 72830618 C T ZFHX3 Missense_Mutation p.C1988Y 0.28 probably_damaging(0.982) TCGA-VQ-A91D-01 16 72991757 72991758 - C ZFHX3 Frame_Shift_Ins p.E763Gfs*26 0.28 TCGA-VQ-A91D-01 16 739238 739238 C T WDR24 Missense_Mutation p.V135M 0.32 tolerated(0.54) benign(0.003) TCGA-VQ-A91D-01 16 746000 746000 A G FBXL16 Intron 0.36 TCGA-VQ-A91D-01 16 75276860 75276860 C T BCAR1 Silent p.S93S 0.30 TCGA-VQ-A91D-01 16 75563216 75563216 C T CHST5 Missense_Mutation p.R356H 0.30 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 16 77228635 77228635 G A MON1B Silent p.V293V 0.38 TCGA-VQ-A91D-01 16 79632859 79632859 T C MAF Missense_Mutation p.H314R 0.28 tolerated(0.14) probably_damaging(0.999) TCGA-VQ-A91D-01 16 81927347 81927347 G A PLCG2 Silent p.S340S 0.46 TCGA-VQ-A91D-01 16 84050208 84050208 C T SLC38A8 Missense_Mutation p.A360T 0.33 tolerated(0.2) benign(0.008) TCGA-VQ-A91D-01 16 84217069 84217069 C T TAF1C Missense_Mutation p.G89R 0.30 deleterious(0.01) probably_damaging(0.954) TCGA-VQ-A91D-01 16 85696983 85696983 A G GSE1 Missense_Mutation p.T803A 0.08 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91D-01 16 86601160 86601160 G A FOXC2 Silent p.P73P 0.36 TCGA-VQ-A91D-01 16 87380856 87380856 A G FBXO31 Missense_Mutation p.L138P 0.40 deleterious(0) possibly_damaging(0.883) TCGA-VQ-A91D-01 16 87760461 87760461 C T KLHDC4 Silent p.P223P 0.34 TCGA-VQ-A91D-01 16 87870221 87870221 C A SLC7A5 Missense_Mutation p.K391N 0.26 tolerated(0.46) benign(0.002) TCGA-VQ-A91D-01 16 88926368 88926368 G A TRAPPC2L Missense_Mutation p.R121H 0.38 tolerated(0.14) benign(0.229) TCGA-VQ-A91D-01 16 88932214 88932214 C T PABPN1L Missense_Mutation p.G131S 0.41 tolerated(0.11) benign(0.164) TCGA-VQ-A91D-01 16 89346403 89346403 C G ANKRD11 Missense_Mutation p.V2183L 0.40 benign(0.021) TCGA-VQ-A91D-01 16 89598933 89598933 G A SPG7 Missense_Mutation p.V405I 0.33 tolerated(0.78) possibly_damaging(0.832) TCGA-VQ-A91D-01 16 89702688 89702688 C T DPEP1 Missense_Mutation p.T85M 0.30 deleterious(0.04) benign(0.158) TCGA-VQ-A91D-01 16 89763996 89763996 C - SPATA2L Frame_Shift_Del p.V341Yfs*256 0.24 TCGA-VQ-A91D-01 16 89764374 89764374 G - SPATA2L Frame_Shift_Del p.R215Efs*102 0.13 TCGA-VQ-A91D-01 16 89831421 89831421 C A FANCA Missense_Mutation p.E885D 0.23 tolerated(0.41) benign(0.001) TCGA-VQ-A91D-01 16 8990942 8990943 AT - USP7 Frame_Shift_Del p.Y911Sfs*15 0.25 TCGA-VQ-A91D-01 16 89925703 89925703 A G SPIRE2 Missense_Mutation p.E468G 0.50 tolerated(0.21) benign(0.008) TCGA-VQ-A91D-01 16 8994851 8994851 T C USP7 Missense_Mutation p.Y735C 0.32 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91D-01 16 90160966 90160966 G A TUBB8P7 Intron 0.20 TCGA-VQ-A91D-01 16 9857925 9857925 C T GRIN2A Missense_Mutation p.R1159H 0.34 tolerated(0.35) benign(0.013) TCGA-VQ-A91D-01 17 10351338 10351338 C T MYH4 Missense_Mutation p.D1588N 0.39 deleterious(0.03) benign(0.012) TCGA-VQ-A91D-01 17 10401083 10401083 C T MYH1 Missense_Mutation p.A1445T 0.34 tolerated(0.1) benign(0.034) TCGA-VQ-A91D-01 17 10428889 10428889 C G MYH2 Missense_Mutation p.E1472D 0.10 deleterious(0.05) benign(0.047) TCGA-VQ-A91D-01 17 10538863 10538863 C T MYH3 Silent p.A1331A 0.31 TCGA-VQ-A91D-01 17 10608253 10608253 A G ADPRM Missense_Mutation p.K4E 0.07 tolerated_low_confidence(0.29) benign(0.002) TCGA-VQ-A91D-01 17 11532823 11532823 G A DNAH9 Silent p.Q480Q 0.07 TCGA-VQ-A91D-01 17 11833357 11833357 C - DNAH9 Frame_Shift_Del p.T4020Rfs*68 0.32 TCGA-VQ-A91D-01 17 11865481 11865481 A G DNAH9 Missense_Mutation p.T4381A 0.35 probably_damaging(0.954) TCGA-VQ-A91D-01 17 12887896 12887896 C A ARHGAP44 Missense_Mutation p.P663Q 0.21 tolerated(0.08) benign(0.16) TCGA-VQ-A91D-01 17 12888089 12888089 G C ARHGAP44 Silent p.R727R 0.14 TCGA-VQ-A91D-01 17 15532378 15532378 G A RP11-385D13.1 Missense_Mutation p.R416W 0.31 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-VQ-A91D-01 17 15928378 15928378 G A TTC19 Missense_Mutation p.A242T 0.32 tolerated(0.21) benign(0.017) TCGA-VQ-A91D-01 17 15961015 15961015 A T NCOR1 Missense_Mutation p.S2069T 0.09 benign(0.021) TCGA-VQ-A91D-01 17 16024413 16024413 G A NCOR1 Missense_Mutation p.A602V 0.30 benign(0.003) TCGA-VQ-A91D-01 17 16041495 16041495 T C NCOR1 Missense_Mutation p.I462V 0.38 probably_damaging(0.959) TCGA-VQ-A91D-01 17 16246244 16246244 G - CENPV Frame_Shift_Del p.H236Tfs*25 0.13 TCGA-VQ-A91D-01 17 16335152 16335152 G A TRPV2 Missense_Mutation p.G548S 0.32 deleterious(0) possibly_damaging(0.846) TCGA-VQ-A91D-01 17 1637479 1637479 C T WDR81 Silent p.D1716D 0.15 TCGA-VQ-A91D-01 17 16471090 16471090 C T ZNF287 5'UTR 0.36 TCGA-VQ-A91D-01 17 16526202 16526202 T - ZNF624 Frame_Shift_Del p.K666Nfs*130 0.23 TCGA-VQ-A91D-01 17 16526706 16526706 T - ZNF624 Frame_Shift_Del p.K498Nfs*74 0.27 TCGA-VQ-A91D-01 17 16593799 16593799 G A CCDC144A Missense_Mutation p.V29I 0.26 deleterious_low_confidence(0) benign(0.103) TCGA-VQ-A91D-01 17 16843751 16843751 C T TNFRSF13B Missense_Mutation p.V174I 0.33 tolerated(1) benign(0.001) TCGA-VQ-A91D-01 17 17076053 17076053 C T MPRIP Missense_Mutation p.R785W 0.27 deleterious(0) probably_damaging(0.992) TCGA-VQ-A91D-01 17 17696746 17696746 G A RAI1 Missense_Mutation p.A162T 0.33 tolerated(0.39) benign(0.003) TCGA-VQ-A91D-01 17 18022684 18022684 C - MYO15A Frame_Shift_Del p.R192Afs*252 0.27 TCGA-VQ-A91D-01 17 18023335 18023335 G A MYO15A Silent p.S407S 0.32 TCGA-VQ-A91D-01 17 1840286 1840286 C T RTN4RL1 Missense_Mutation p.S277N 0.38 deleterious(0) benign(0.08) TCGA-VQ-A91D-01 17 18635444 18635444 C A TRIM16L Missense_Mutation p.Q154K 0.26 tolerated(1) benign(0.004) TCGA-VQ-A91D-01 17 18881175 18881175 G A FAM83G Missense_Mutation p.R602C 0.39 tolerated(0.07) benign(0.001) TCGA-VQ-A91D-01 17 18907044 18907044 G A FAM83G Missense_Mutation p.A104V 0.36 tolerated(0.24) benign(0.004) TCGA-VQ-A91D-01 17 19476157 19476157 A G SLC47A1 Missense_Mutation p.Q490R 0.30 tolerated(0.53) benign(0.007) TCGA-VQ-A91D-01 17 1968802 1968802 T C SMG6 Missense_Mutation p.E1336G 0.25 deleterious(0.01) probably_damaging(0.954) TCGA-VQ-A91D-01 17 20407329 20407329 G A RP11-434D2.7 3'Flank 0.27 TCGA-VQ-A91D-01 17 21075361 21075361 C T DHRS7B Silent p.D17D 0.41 TCGA-VQ-A91D-01 17 21731489 21731489 C - UBBP4 Frame_Shift_Del p.D191Ifs*35 0.26 TCGA-VQ-A91D-01 17 25936339 25936339 G A KSR1 Missense_Mutation p.V622M 0.36 deleterious(0.01) benign(0.054) TCGA-VQ-A91D-01 17 2597513 2597513 C G CLUH Missense_Mutation p.D960H 0.19 deleterious(0) probably_damaging(0.994) TCGA-VQ-A91D-01 17 26696845 26696845 G A VTN Missense_Mutation p.P71L 0.09 deleterious(0) probably_damaging(0.935) TCGA-VQ-A91D-01 17 26942089 26942089 C T KIAA0100 Missense_Mutation p.R2234H 0.27 deleterious_low_confidence(0.03) benign(0.063) TCGA-VQ-A91D-01 17 26970242 26970242 G A KIAA0100 Silent p.S112S 0.25 TCGA-VQ-A91D-01 17 27076003 27076003 T A TRAF4 Missense_Mutation p.V274E 0.20 tolerated(0.22) benign(0.093) TCGA-VQ-A91D-01 17 27086023 27086023 T C FAM222B Silent p.P318P 0.33 TCGA-VQ-A91D-01 17 27380557 27380557 G A PIPOX Missense_Mutation p.A202T 0.26 tolerated(0.12) benign(0.127) TCGA-VQ-A91D-01 17 27903655 27903655 G A GIT1 Missense_Mutation p.T431M 0.33 deleterious(0) possibly_damaging(0.72) TCGA-VQ-A91D-01 17 28380858 28380858 G A EFCAB5 Missense_Mutation p.R629H 0.27 tolerated(0.56) benign(0.014) TCGA-VQ-A91D-01 17 28886670 28886670 G A TBC1D29 5'UTR 0.37 TCGA-VQ-A91D-01 17 2923829 2923829 C T RAP1GAP2 Missense_Mutation p.S564L 0.18 deleterious(0.03) possibly_damaging(0.734) TCGA-VQ-A91D-01 17 29665144 29665144 G A NF1 Missense_Mutation p.R2269H 0.35 deleterious(0.03) probably_damaging(0.984) TCGA-VQ-A91D-01 17 30688523 30688523 C T ZNF207 Silent p.C196C 0.37 TCGA-VQ-A91D-01 17 3324478 3324478 T G OR3A3 Missense_Mutation p.L206R 0.29 tolerated(0.05) benign(0.254) TCGA-VQ-A91D-01 17 33454318 33454318 T G FNDC8 Missense_Mutation p.L156R 0.39 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-VQ-A91D-01 17 33477072 33477072 G A UNC45B Missense_Mutation p.D71N 0.27 deleterious(0.01) possibly_damaging(0.838) TCGA-VQ-A91D-01 17 33496936 33496939 CAAA - UNC45B Frame_Shift_Del p.K512Sfs*11 0.38 TCGA-VQ-A91D-01 17 33497238 33497238 C T UNC45B Silent p.D551D 0.26 TCGA-VQ-A91D-01 17 3386820 3386820 G A ASPA Missense_Mutation p.V154I 0.40 tolerated(0.17) benign(0.009) TCGA-VQ-A91D-01 17 34147190 34147190 C T TAF15 Missense_Mutation p.T41M 0.28 tolerated_low_confidence(0.06) unknown(0) TCGA-VQ-A91D-01 17 34169457 34169457 C T TAF15 Missense_Mutation p.R334W 0.39 deleterious_low_confidence(0.01) probably_damaging(0.937) TCGA-VQ-A91D-01 17 34416095 34416095 G A CCL3 Nonsense_Mutation p.R68* 0.32 TCGA-VQ-A91D-01 17 3474836 3474836 A G SHPK Missense_Mutation p.S777P 0.31 tolerated(0.06) probably_damaging(0.976) TCGA-VQ-A91D-01 17 3494618 3494618 C T SHPK Missense_Mutation p.S105N 0.49 tolerated(0.35) benign(0.024) TCGA-VQ-A91D-01 17 3560052 3560052 T C CTNS Missense_Mutation p.L215P 0.10 deleterious(0.03) probably_damaging(0.992) TCGA-VQ-A91D-01 17 3563924 3563924 C T CTNS Missense_Mutation p.R367C 0.23 tolerated(0.23) benign(0.001) TCGA-VQ-A91D-01 17 36478398 36478398 A G MRPL45 Missense_Mutation p.M281V 0.32 tolerated(0.28) benign(0.096) TCGA-VQ-A91D-01 17 36495405 36495405 C - GPR179 Frame_Shift_Del p.Q267Rfs*6 0.15 TCGA-VQ-A91D-01 17 36499124 36499124 C T GPR179 Silent p.V183V 0.24 TCGA-VQ-A91D-01 17 36895337 36895337 C T PCGF2 Silent p.A100A 0.21 TCGA-VQ-A91D-01 17 3721749 3721749 T C C17orf85 Missense_Mutation p.Y373C 0.18 deleterious(0) possibly_damaging(0.754) TCGA-VQ-A91D-01 17 37646922 37646922 C - CDK12 Frame_Shift_Del p.P683Qfs*70 0.22 TCGA-VQ-A91D-01 17 37816701 37816701 T C STARD3 Silent p.P292P 0.41 TCGA-VQ-A91D-01 17 37826321 37826321 C T PNMT Silent p.D176D 0.24 TCGA-VQ-A91D-01 17 37873699 37873699 G A ERBB2 Missense_Mutation p.A622T 0.29 tolerated(0.47) benign(0) TCGA-VQ-A91D-01 17 38245524 38245524 G A THRA Missense_Mutation p.E350K 0.35 tolerated(0.81) benign(0.318) TCGA-VQ-A91D-01 17 38340482 38340482 G T RAPGEFL1 5'UTR 0.34 TCGA-VQ-A91D-01 17 3844577 3844577 G A ATP2A3 Silent p.C596C 0.30 TCGA-VQ-A91D-01 17 38856576 38856576 C T KRT24 Silent p.A305A 0.33 TCGA-VQ-A91D-01 17 39155922 39155922 C T KRTAP3-2 Missense_Mutation p.V62M 0.32 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-VQ-A91D-01 17 39240714 39240714 C T KRTAP4-7 Missense_Mutation p.R86C 0.29 deleterious(0) unknown(0) TCGA-VQ-A91D-01 17 39578642 39578642 G A KRT37 Silent p.I259I 0.32 TCGA-VQ-A91D-01 17 39578650 39578650 A G KRT37 Missense_Mutation p.F257L 0.34 tolerated(1) benign(0) TCGA-VQ-A91D-01 17 39658946 39658946 A G KRT13 Missense_Mutation p.L339P 0.29 deleterious(0) probably_damaging(0.997) TCGA-VQ-A91D-01 17 39768447 39768447 C T KRT16 Missense_Mutation p.S165N 0.28 deleterious(0.02) benign(0.445) TCGA-VQ-A91D-01 17 39919354 39919354 G A JUP Missense_Mutation p.R460C 0.39 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 17 39975559 39975559 C - FKBP10 Frame_Shift_Del p.G278Afs*20 0.31 TCGA-VQ-A91D-01 17 40120498 40120503 ACCAGT - CNP In_Frame_Del p.Y143_Q144del 0.18 TCGA-VQ-A91D-01 17 40328231 40328231 C T KCNH4 Missense_Mutation p.V224I 0.30 tolerated(0.89) benign(0.001) TCGA-VQ-A91D-01 17 40328258 40328259 - C KCNH4 Frame_Shift_Ins p.S215Vfs*39 0.27 TCGA-VQ-A91D-01 17 40343040 40343040 T C GHDC Missense_Mutation p.T360A 0.40 tolerated(0.6) benign(0.068) TCGA-VQ-A91D-01 17 40362447 40362447 T - STAT5B Frame_Shift_Del p.K583Nfs*16 0.27 TCGA-VQ-A91D-01 17 40766006 40766006 C T TUBG1 Missense_Mutation p.T278M 0.26 tolerated(0.25) benign(0.149) TCGA-VQ-A91D-01 17 4083121 4083121 C A ANKFY1 Missense_Mutation p.E806D 0.32 tolerated(0.61) benign(0.003) TCGA-VQ-A91D-01 17 41243048 41243048 A G BRCA1 Silent p.G1366G 0.28 TCGA-VQ-A91D-01 17 41898415 41898415 G A MPP3 Silent p.R232R 0.24 TCGA-VQ-A91D-01 17 42161206 42161206 C A HDAC5 Missense_Mutation p.K775N 0.29 deleterious(0.03) probably_damaging(0.99) TCGA-VQ-A91D-01 17 42165899 42165899 G A HDAC5 Silent p.G486G 0.12 TCGA-VQ-A91D-01 17 42266578 42266578 A G TMUB2 Missense_Mutation p.D75G 0.25 tolerated(0.16) benign(0.114) TCGA-VQ-A91D-01 17 42837126 42837126 G - ADAM11 Frame_Shift_Del p.G35Afs*52 0.27 TCGA-VQ-A91D-01 17 42925460 42925461 CT - HIGD1B 5'UTR 0.29 TCGA-VQ-A91D-01 17 42928638 42928638 G A EFTUD2 3'UTR 0.27 TCGA-VQ-A91D-01 17 42956967 42956967 C T EFTUD2 Missense_Mutation p.R220H 0.24 deleterious(0.01) probably_damaging(0.998) TCGA-VQ-A91D-01 17 43196349 43196349 C A PLCD3 Missense_Mutation p.R249L 0.36 tolerated(0.34) benign(0.02) TCGA-VQ-A91D-01 17 44060593 44060593 C - MAPT Frame_Shift_Del p.P143Qfs*3 0.21 TCGA-VQ-A91D-01 17 44060901 44060901 G A MAPT Missense_Mutation p.R244Q 0.30 tolerated(0.75) benign(0) TCGA-VQ-A91D-01 17 44144025 44144025 G A KANSL1 Nonsense_Mutation p.R576* 0.33 TCGA-VQ-A91D-01 17 45776788 45776788 G A TBKBP1 Missense_Mutation p.R246Q 0.33 deleterious(0.01) probably_damaging(0.92) TCGA-VQ-A91D-01 17 45925454 45925454 G A SP6 Silent p.G114G 0.18 TCGA-VQ-A91D-01 17 46629806 46629806 C T HOXB3 Missense_Mutation p.A11T 0.34 tolerated(0.29) benign(0.002) TCGA-VQ-A91D-01 17 46670964 46670964 G A HOXB5 Silent p.G27G 0.11 TCGA-VQ-A91D-01 17 46692084 46692084 C T HOXB8 5'UTR 0.21 TCGA-VQ-A91D-01 17 47295131 47295131 C T ABI3 Nonsense_Mutation p.R106* 0.41 TCGA-VQ-A91D-01 17 48431304 48431304 C - XYLT2 Frame_Shift_Del p.Q152Sfs*57 0.32 TCGA-VQ-A91D-01 17 48437575 48437575 C T XYLT2 Silent p.L841L 0.50 TCGA-VQ-A91D-01 17 48585975 48585975 G A MYCBPAP Silent p.A23A 0.33 TCGA-VQ-A91D-01 17 4860422 4860422 C A ENO3 3'UTR 0.26 TCGA-VQ-A91D-01 17 48618234 48618234 G A EPN3 Missense_Mutation p.V354I 0.30 tolerated(0.59) benign(0.001) TCGA-VQ-A91D-01 17 4876168 4876168 C T CAMTA2 Missense_Mutation p.R823Q 0.29 deleterious(0.02) probably_damaging(0.992) TCGA-VQ-A91D-01 17 48918239 48918239 G - WFIKKN2 Frame_Shift_Del p.E532Rfs*75 0.19 TCGA-VQ-A91D-01 17 4925700 4925700 C T KIF1C Missense_Mutation p.A775V 0.30 deleterious_low_confidence(0) benign(0.021) TCGA-VQ-A91D-01 17 5012625 5012625 C - ZNF232 Intron 0.22 TCGA-VQ-A91D-01 17 5087350 5087350 C T ZNF594 Missense_Mutation p.E68K 0.30 tolerated(0.23) benign(0.01) TCGA-VQ-A91D-01 17 534811 534811 C T VPS53 Silent p.A222A 0.23 TCGA-VQ-A91D-01 17 55962834 55962835 - G CUEDC1 Frame_Shift_Ins p.Q31Pfs*70 0.20 TCGA-VQ-A91D-01 17 56272511 56272511 C - EPX Frame_Shift_Del p.C263Afs*140 0.22 TCGA-VQ-A91D-01 17 56435161 56435161 C - RNF43 Frame_Shift_Del p.G659Vfs*41 0.49 TCGA-VQ-A91D-01 17 57215235 57215235 T - SKA2 Intron 0.38 TCGA-VQ-A91D-01 17 57812798 57812798 T C VMP1 Missense_Mutation p.L59P 0.31 tolerated(0.07) possibly_damaging(0.894) TCGA-VQ-A91D-01 17 58372042 58372042 A G USP32 Splice_Site p.X137_splice 0.33 TCGA-VQ-A91D-01 17 59958394 59958394 T - INTS2 Frame_Shift_Del p.N751Ifs*16 0.32 TCGA-VQ-A91D-01 17 6012979 6012979 C - WSCD1 Frame_Shift_Del p.R303Gfs*125 0.12 TCGA-VQ-A91D-01 17 61781804 61781804 G - STRADA Frame_Shift_Del p.R333Gfs*42 0.33 TCGA-VQ-A91D-01 17 61911663 61911663 C T SMARCD2 Missense_Mutation p.R316Q 0.19 deleterious(0.02) benign(0.02) TCGA-VQ-A91D-01 17 62041045 62041045 G A SCN4A Silent p.S531S 0.48 TCGA-VQ-A91D-01 17 62121320 62121320 G A ERN1 3'UTR 0.34 TCGA-VQ-A91D-01 17 62522299 62522299 G T CEP95 Missense_Mutation p.R378L 0.24 deleterious(0) probably_damaging(0.987) TCGA-VQ-A91D-01 17 62541844 62541856 AAAAAAAAGGGGG - SMURF2 3'UTR 0.33 TCGA-VQ-A91D-01 17 62547747 62547747 T C SMURF2 Silent p.V608V 0.38 TCGA-VQ-A91D-01 17 62552042 62552042 A G SMURF2 Silent p.G502G 0.31 TCGA-VQ-A91D-01 17 62582218 62582218 G A SMURF2 Silent p.N157N 0.29 TCGA-VQ-A91D-01 17 63221156 63221156 G A RGS9 Missense_Mutation p.V482M 0.33 deleterious(0.04) benign(0.221) TCGA-VQ-A91D-01 17 6348441 6348441 G A FAM64A Missense_Mutation p.R4Q 0.45 tolerated(0.35) benign(0.017) TCGA-VQ-A91D-01 17 64881182 64881182 G A CACNG5 Missense_Mutation p.R218H 0.21 deleterious(0.01) benign(0.017) TCGA-VQ-A91D-01 17 649993 649995 CTT - GEMIN4 In_Frame_Del p.K430del 0.34 TCGA-VQ-A91D-01 17 6599216 6599216 T C SLC13A5 Missense_Mutation p.E295G 0.07 deleterious(0) possibly_damaging(0.781) TCGA-VQ-A91D-01 17 66267646 66267646 G A SLC16A6 Missense_Mutation p.R219W 0.40 deleterious(0.01) possibly_damaging(0.873) TCGA-VQ-A91D-01 17 685492 685492 C T GLOD4 Missense_Mutation p.A2T 0.46 tolerated(0.27) benign(0.011) TCGA-VQ-A91D-01 17 685497 685497 A T GLOD4 5'UTR 0.48 TCGA-VQ-A91D-01 17 6909311 6909311 C T ALOX12 Silent p.A461A 0.31 TCGA-VQ-A91D-01 17 7096856 7096856 C T DLG4 Missense_Mutation p.A590T 0.29 deleterious(0) benign(0.443) TCGA-VQ-A91D-01 17 7214401 7214403 ATA - EIF5A In_Frame_Del p.N108del 0.38 TCGA-VQ-A91D-01 17 72349385 72349385 G A KIF19 Missense_Mutation p.S722N 0.64 tolerated(0.56) benign(0.001) TCGA-VQ-A91D-01 17 7246755 7246755 G A ACAP1 Silent p.L134L 0.30 TCGA-VQ-A91D-01 17 72851239 72851239 G T GRIN2C 5'UTR 0.26 TCGA-VQ-A91D-01 17 73055611 73055611 G A KCTD2 Missense_Mutation p.V183M 0.16 tolerated(0.07) benign(0.019) TCGA-VQ-A91D-01 17 73262885 73262885 C T MIF4GD Missense_Mutation p.R243Q 0.28 tolerated(0.07) probably_damaging(0.968) TCGA-VQ-A91D-01 17 7330505 7330505 A G C17orf74 Missense_Mutation p.T399A 0.10 tolerated(0.12) benign(0.003) TCGA-VQ-A91D-01 17 7344865 7344865 G A FGF11 Missense_Mutation p.S90N 0.33 deleterious(0.03) possibly_damaging(0.516) TCGA-VQ-A91D-01 17 7346264 7346264 G A FGF11 Intron 0.31 TCGA-VQ-A91D-01 17 7366255 7366255 G T ZBTB4 Silent p.A682A 0.26 TCGA-VQ-A91D-01 17 73811274 73811274 G A UNK Missense_Mutation p.D301N 0.34 tolerated(0.06) probably_damaging(0.999) TCGA-VQ-A91D-01 17 73830215 73830215 C A UNC13D Missense_Mutation p.G770C 0.26 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91D-01 17 74003155 74003155 G A EVPL 3'UTR 0.38 TCGA-VQ-A91D-01 17 74005213 74005213 C T EVPL Missense_Mutation p.R1358H 0.13 deleterious(0.03) benign(0.034) TCGA-VQ-A91D-01 17 74073309 74073309 C T GALR2 Missense_Mutation p.R321C 0.35 deleterious(0) possibly_damaging(0.549) TCGA-VQ-A91D-01 17 74076456 74076456 C A ZACN Silent p.P165P 0.29 TCGA-VQ-A91D-01 17 74150282 74150282 C A RNF157 Intron 0.11 TCGA-VQ-A91D-01 17 7474703 7474703 C G SENP3 Missense_Mutation p.L543V 0.24 tolerated(0.05) probably_damaging(0.997) TCGA-VQ-A91D-01 17 75209483 75209483 C T SEC14L1 Missense_Mutation p.R651W 0.39 tolerated(0.19) benign(0.07) TCGA-VQ-A91D-01 17 76446846 76446846 G A DNAH17 Missense_Mutation p.A3592V 0.30 possibly_damaging(0.802) TCGA-VQ-A91D-01 17 76525682 76525682 C A DNAH17 Missense_Mutation p.G1127W 0.37 probably_damaging(0.923) TCGA-VQ-A91D-01 17 77079944 77079944 G A ENGASE Silent p.T451T 0.40 TCGA-VQ-A91D-01 17 77984114 77984114 C A TBC1D16 Missense_Mutation p.E208D 0.30 tolerated(0.18) benign(0.033) TCGA-VQ-A91D-01 17 78073601 78073601 G T CCDC40 3'UTR 0.39 TCGA-VQ-A91D-01 17 78086712 78086712 C T GAA Silent p.V642V 0.23 TCGA-VQ-A91D-01 17 78265587 78265587 C T RNF213 Missense_Mutation p.R478C 0.29 possibly_damaging(0.877) TCGA-VQ-A91D-01 17 79226973 79226974 CT - SLC38A10 Frame_Shift_Del p.E452Gfs*58 0.31 TCGA-VQ-A91D-01 17 79287703 79287703 G - TMEM105 Frame_Shift_Del p.T47Pfs*31 0.22 TCGA-VQ-A91D-01 17 79682048 79682048 T C SLC25A10 Silent p.R53R 0.32 TCGA-VQ-A91D-01 17 79803764 79803764 T - P4HB Frame_Shift_Del p.N387Tfs*118 0.23 TCGA-VQ-A91D-01 17 7984415 7984415 C T AC129492.6 3'UTR 0.14 TCGA-VQ-A91D-01 17 80014374 80014374 C - GPS1 Frame_Shift_Del p.H397Mfs*44 0.18 TCGA-VQ-A91D-01 17 80059474 80059474 C - FASN 5'Flank 0.18 TCGA-VQ-A91D-01 17 80529675 80529675 A G FOXK2 Missense_Mutation p.T280A 0.34 deleterious(0) possibly_damaging(0.746) TCGA-VQ-A91D-01 17 80541984 80541984 C - FOXK2 Frame_Shift_Del p.L402Wfs*35 0.29 TCGA-VQ-A91D-01 17 80542006 80542006 C T FOXK2 Silent p.G407G 0.32 TCGA-VQ-A91D-01 17 80788347 80788347 C T ZNF750 Missense_Mutation p.G615S 0.31 tolerated(1) benign(0.001) TCGA-VQ-A91D-01 17 80788570 80788570 G A ZNF750 Silent p.T540T 0.39 TCGA-VQ-A91D-01 17 80887329 80887329 G A TBCD Missense_Mutation p.V982I 0.28 tolerated(0.23) benign(0.376) TCGA-VQ-A91D-01 17 8160232 8160232 C T PFAS Silent p.H342H 0.32 TCGA-VQ-A91D-01 17 8702081 8702081 C T MFSD6L Missense_Mutation p.A120T 0.27 tolerated(0.6) benign(0.031) TCGA-VQ-A91D-01 17 8736215 8736215 G C PIK3R6 Missense_Mutation p.R265G 0.17 tolerated(0.32) benign(0.082) TCGA-VQ-A91D-01 17 9808222 9808222 C G RCVRN Missense_Mutation p.M92I 0.19 tolerated(0.24) benign(0.237) TCGA-VQ-A91D-01 18 12325749 12325749 A G TUBB6 Missense_Mutation p.M321V 0.25 tolerated_low_confidence(0.27) benign(0.002) TCGA-VQ-A91D-01 18 14105998 14105998 A G ZNF519 Missense_Mutation p.Y181H 0.11 tolerated(0.06) possibly_damaging(0.495) TCGA-VQ-A91D-01 18 19353661 19353661 A G MIB1 Missense_Mutation p.N203S 0.09 deleterious(0) possibly_damaging(0.825) TCGA-VQ-A91D-01 18 21114451 21114451 C T NPC1 Missense_Mutation p.V1184M 0.27 deleterious(0.02) benign(0.384) TCGA-VQ-A91D-01 18 21487823 21487823 G T LAMA3 Silent p.V2313V 0.30 TCGA-VQ-A91D-01 18 21501446 21501446 C T LAMA3 Missense_Mutation p.R2692C 0.26 possibly_damaging(0.601) TCGA-VQ-A91D-01 18 2891854 2891854 C T EMILIN2 Missense_Mutation p.R577C 0.28 tolerated(0.05) benign(0.443) TCGA-VQ-A91D-01 18 30092751 30092752 - A WBP11P1 RNA 0.26 TCGA-VQ-A91D-01 18 30349639 30349639 T C KLHL14 Missense_Mutation p.R306G 0.30 tolerated(0.25) probably_damaging(0.95) TCGA-VQ-A91D-01 18 33706783 33706783 C T SLC39A6 Missense_Mutation p.R63H 0.32 deleterious(0) benign(0.025) TCGA-VQ-A91D-01 18 347270 347270 G T COLEC12 Missense_Mutation p.L118I 0.32 deleterious(0.05) benign(0.048) TCGA-VQ-A91D-01 18 3879897 3879897 C T DLGAP1 Missense_Mutation p.V58M 0.29 tolerated(1) benign(0.002) TCGA-VQ-A91D-01 18 39570501 39570501 A G PIK3C3 Missense_Mutation p.I233V 0.43 tolerated(1) benign(0.006) TCGA-VQ-A91D-01 18 40695396 40695396 C - RIT2 Frame_Shift_Del p.G30Efs*7 0.21 TCGA-VQ-A91D-01 18 47769298 47769298 A G CCDC11 Silent p.C395C 0.36 TCGA-VQ-A91D-01 18 54354084 54354084 A T WDR7 Splice_Site p.X200_splice 0.34 TCGA-VQ-A91D-01 18 57013176 57013176 G A LMAN1 Silent p.G310G 0.36 TCGA-VQ-A91D-01 18 59174751 59174751 C T CDH20 Silent p.S325S 0.17 TCGA-VQ-A91D-01 18 5969426 5969426 C T L3MBTL4 Missense_Mutation p.R536Q 0.29 tolerated(1) benign(0) TCGA-VQ-A91D-01 18 60241548 60241548 G A ZCCHC2 Missense_Mutation p.G745D 0.31 deleterious(0.01) probably_damaging(1) TCGA-VQ-A91D-01 18 61323103 61323103 G A SERPINB3 Missense_Mutation p.R321C 0.33 deleterious(0.04) possibly_damaging(0.653) TCGA-VQ-A91D-01 18 66504217 66504218 - T CCDC102B Frame_Shift_Ins p.R74Sfs*6 0.25 TCGA-VQ-A91D-01 18 7117665 7117665 G A LAMA1 Nonsense_Mutation p.Q19* 0.16 TCGA-VQ-A91D-01 18 72201921 72201921 A C CNDP1 Silent p.R7R 0.20 TCGA-VQ-A91D-01 18 72998534 72998534 C T TSHZ1 Missense_Mutation p.T346M 0.30 deleterious(0.03) probably_damaging(0.991) TCGA-VQ-A91D-01 18 74091361 74091361 C T ZNF516 Silent p.G903G 0.32 TCGA-VQ-A91D-01 18 74637230 74637230 A G ZNF236 Silent p.G1247G 0.13 TCGA-VQ-A91D-01 18 76757282 76757282 C T SALL3 Missense_Mutation p.T1288M 0.41 deleterious(0.02) possibly_damaging(0.886) TCGA-VQ-A91D-01 18 77246657 77246657 C - NFATC1 Frame_Shift_Del p.P823Lfs*76 0.17 TCGA-VQ-A91D-01 18 77473085 77473085 C T CTDP1 Missense_Mutation p.T326M 0.31 deleterious(0) probably_damaging(0.954) TCGA-VQ-A91D-01 18 77659594 77659594 C A KCNG2 Silent p.G393G 0.18 TCGA-VQ-A91D-01 18 8609942 8609942 T C RAB12 Missense_Mutation p.S73P 0.30 deleterious(0) benign(0.001) TCGA-VQ-A91D-01 19 10158023 10158023 G C C3P1 RNA 0.06 TCGA-VQ-A91D-01 19 10204244 10204244 A G ANGPTL6 Missense_Mutation p.Y335H 0.23 tolerated(0.4) benign(0.004) TCGA-VQ-A91D-01 19 10224560 10224560 C - P2RY11 Frame_Shift_Del p.K93Sfs*57 0.26 TCGA-VQ-A91D-01 19 10247891 10247891 G A DNMT1 Silent p.R1453R 0.62 TCGA-VQ-A91D-01 19 10248637 10248637 G A DNMT1 Silent p.S1388S 0.28 TCGA-VQ-A91D-01 19 10265444 10265444 C T DNMT1 Silent p.T550T 0.31 TCGA-VQ-A91D-01 19 10335384 10335384 C T S1PR2 Silent p.S66S 0.29 TCGA-VQ-A91D-01 19 10398492 10398492 G A ICAM4 Missense_Mutation p.G200S 0.33 tolerated_low_confidence(0.35) benign(0) TCGA-VQ-A91D-01 19 10433320 10433320 C T RAVER1 Splice_Site p.X408_splice 0.38 TCGA-VQ-A91D-01 19 1073269 1073269 C A HMHA1 Silent p.G197G 0.32 TCGA-VQ-A91D-01 19 1080106 1080106 C T HMHA1 Silent p.S580S 0.21 TCGA-VQ-A91D-01 19 10906864 10906864 T C DNM2 Intron 0.33 TCGA-VQ-A91D-01 19 10943684 10943684 G A DNM2 3'Flank 0.33 TCGA-VQ-A91D-01 19 11170537 11170537 G A SMARCA4 Missense_Mutation p.E1582K 0.39 benign(0.048) TCGA-VQ-A91D-01 19 11485519 11485519 C A SWSAP1 Missense_Mutation p.Q34K 0.35 tolerated(0.36) benign(0.023) TCGA-VQ-A91D-01 19 11552071 11552072 GA - PRKCSH Frame_Shift_Del p.E125Vfs*21 0.32 TCGA-VQ-A91D-01 19 11591523 11591523 C T ELAVL3 5'UTR 0.21 TCGA-VQ-A91D-01 19 11728572 11728572 C A ZNF627 Silent p.P418P 0.35 TCGA-VQ-A91D-01 19 12035996 12035996 C A ZNF763 5'UTR 0.22 TCGA-VQ-A91D-01 19 12258614 12258614 A G ZNF625 Missense_Mutation p.S3P 0.32 tolerated(0.13) probably_damaging(0.96) TCGA-VQ-A91D-01 19 12358459 12358459 C T ZNF44 Missense_Mutation p.R419Q 0.33 benign(0) TCGA-VQ-A91D-01 19 12430403 12430403 G A ZNF563 Missense_Mutation p.R146C 0.32 tolerated(1) benign(0.001) TCGA-VQ-A91D-01 19 12491877 12491877 C A CTD-3105H18.14 3'UTR 0.36 TCGA-VQ-A91D-01 19 13008661 13008661 C T GCDH Silent p.A409A 0.20 TCGA-VQ-A91D-01 19 13039174 13039174 C T FARSA Missense_Mutation p.D275N 0.22 deleterious(0) probably_damaging(0.986) TCGA-VQ-A91D-01 19 13365981 13365981 G A CACNA1A Silent p.F1561F 0.37 TCGA-VQ-A91D-01 19 13941490 13941490 G A ZSWIM4 Missense_Mutation p.V866I 0.17 tolerated(1) unknown(0) TCGA-VQ-A91D-01 19 14552048 14552048 C T PKN1 Missense_Mutation p.R45W 0.38 deleterious(0) possibly_damaging(0.802) TCGA-VQ-A91D-01 19 14582518 14582518 G A PKN1 Silent p.P923P 0.33 TCGA-VQ-A91D-01 19 14676655 14676655 G A TECR Missense_Mutation p.R300H 0.40 deleterious(0.03) benign(0.262) TCGA-VQ-A91D-01 19 15052603 15052604 - T OR7C2 Frame_Shift_Ins p.I105Hfs*17 0.33 TCGA-VQ-A91D-01 19 15226977 15226977 C T ILVBL Missense_Mutation p.R486H 0.38 tolerated(0.14) benign(0.013) TCGA-VQ-A91D-01 19 15234051 15234051 G A ILVBL Missense_Mutation p.T114M 0.35 deleterious(0.02) benign(0.064) TCGA-VQ-A91D-01 19 15535043 15535043 G - WIZ Frame_Shift_Del p.Q726Rfs*44 0.33 TCGA-VQ-A91D-01 19 15567045 15567045 G A RASAL3 Missense_Mutation p.R531C 0.25 tolerated(0.08) benign(0.027) TCGA-VQ-A91D-01 19 15571920 15571920 C T RASAL3 Missense_Mutation p.G186E 0.34 tolerated(0.09) probably_damaging(0.991) TCGA-VQ-A91D-01 19 15838930 15838930 T C OR10H2 Missense_Mutation p.M26T 0.32 tolerated(0.69) benign(0.001) TCGA-VQ-A91D-01 19 15871200 15871200 C T LLNLR-249E10.1 RNA 0.57 TCGA-VQ-A91D-01 19 16314384 16314384 G - AP1M1 Frame_Shift_Del p.V55Sfs*194 0.27 TCGA-VQ-A91D-01 19 16345272 16345272 C T AP1M1 3'UTR 0.26 TCGA-VQ-A91D-01 19 16860978 16860978 G A NWD1 Missense_Mutation p.A509T 0.37 tolerated(0.05) benign(0.168) TCGA-VQ-A91D-01 19 17108002 17108002 G A CPAMD8 Silent p.P385P 0.26 TCGA-VQ-A91D-01 19 17411983 17411983 C T ABHD8 Missense_Mutation p.R148Q 0.41 tolerated(0.43) benign(0.226) TCGA-VQ-A91D-01 19 17452530 17452530 G A GTPBP3 3'UTR 0.31 TCGA-VQ-A91D-01 19 17463085 17463085 T C PLVAP 3'UTR 0.39 TCGA-VQ-A91D-01 19 17476476 17476476 G T PLVAP Silent p.A266A 0.13 TCGA-VQ-A91D-01 19 17597566 17597566 G A SLC27A1 Missense_Mutation p.R121H 0.42 tolerated(0.55) benign(0.005) TCGA-VQ-A91D-01 19 17597990 17597990 C T SLC27A1 Silent p.A190A 0.32 TCGA-VQ-A91D-01 19 17738747 17738747 G T UNC13A Silent p.P1252P 0.33 TCGA-VQ-A91D-01 19 17893892 17893892 C T FCHO1 Silent p.S668S 0.33 TCGA-VQ-A91D-01 19 17894998 17894998 A G FCHO1 Missense_Mutation p.Q727R 0.29 deleterious(0.02) possibly_damaging(0.561) TCGA-VQ-A91D-01 19 18054469 18054469 G A CCDC124 Missense_Mutation p.R206H 0.20 deleterious(0) possibly_damaging(0.903) TCGA-VQ-A91D-01 19 1816753 1816753 G A REXO1 Silent p.H1087H 0.27 TCGA-VQ-A91D-01 19 18547550 18547550 C T ISYNA1 Missense_Mutation p.A185T 0.50 deleterious(0) probably_damaging(0.995) TCGA-VQ-A91D-01 19 18649138 18649138 G A FKBP8 Silent p.A220A 0.26 TCGA-VQ-A91D-01 19 18779710 18779710 C T KLHL26 Silent p.H501H 0.38 TCGA-VQ-A91D-01 19 18895131 18895131 C T COMP Missense_Mutation p.A653T 0.23 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91D-01 19 19165047 19165047 G A ARMC6 Missense_Mutation p.V314I 0.27 tolerated(0.12) benign(0.035) TCGA-VQ-A91D-01 19 19625925 19625925 G A TSSK6 Silent p.N104N 0.30 TCGA-VQ-A91D-01 19 19653337 19653337 C A CILP2 Missense_Mutation p.P249H 0.54 deleterious(0.04) possibly_damaging(0.549) TCGA-VQ-A91D-01 19 19653757 19653757 C - CILP2 Frame_Shift_Del p.M320Cfs*74 0.28 TCGA-VQ-A91D-01 19 20002951 20002951 G A ZNF253 Missense_Mutation p.V299I 0.39 deleterious(0.02) benign(0.053) TCGA-VQ-A91D-01 19 2194555 2194555 A G DOT1L Silent p.G210G 0.28 TCGA-VQ-A91D-01 19 21992491 21992491 T - ZNF43 Frame_Shift_Del p.D117Tfs*36 0.33 TCGA-VQ-A91D-01 19 2251647 2251647 C T AMH Silent p.A458A 0.37 TCGA-VQ-A91D-01 19 23329464 23329464 G T ZNF730 3'UTR 0.36 TCGA-VQ-A91D-01 19 2807765 2807765 G - THOP1 Frame_Shift_Del p.E406Rfs*73 0.26 TCGA-VQ-A91D-01 19 2834308 2834308 C T ZNF554 Nonsense_Mutation p.R359* 0.33 TCGA-VQ-A91D-01 19 2989633 2989633 C T TLE6 Missense_Mutation p.A365V 0.48 tolerated(0.12) benign(0.004) TCGA-VQ-A91D-01 19 30505984 30505984 C T URI1 3'UTR 0.37 TCGA-VQ-A91D-01 19 3162949 3162949 C T GNA15 Missense_Mutation p.R353C 0.27 deleterious(0.01) probably_damaging(0.971) TCGA-VQ-A91D-01 19 3179078 3179078 C T S1PR4 Silent p.G96G 0.38 TCGA-VQ-A91D-01 19 32845481 32845481 G C ZNF507 Missense_Mutation p.G582A 0.40 deleterious(0) probably_damaging(0.981) TCGA-VQ-A91D-01 19 33696502 33696502 G A LRP3 Missense_Mutation p.G276R 0.25 tolerated(0.22) probably_damaging(0.99) TCGA-VQ-A91D-01 19 34003603 34003603 G A PEPD Missense_Mutation p.R33W 0.36 deleterious(0) probably_damaging(0.938) TCGA-VQ-A91D-01 19 35449744 35449744 C T ZNF792 Missense_Mutation p.V339M 0.38 tolerated(0.05) benign(0.103) TCGA-VQ-A91D-01 19 35761683 35761683 G A USF2 Missense_Mutation p.A215T 0.30 deleterious(0.02) probably_damaging(0.933) TCGA-VQ-A91D-01 19 3600302 3600302 C T TBXA2R Missense_Mutation p.V111I 0.36 tolerated(0.13) benign(0.005) TCGA-VQ-A91D-01 19 3600305 3600305 C T TBXA2R Missense_Mutation p.V110I 0.36 tolerated(0.49) possibly_damaging(0.75) TCGA-VQ-A91D-01 19 36046439 36046439 G A ATP4A Missense_Mutation p.S687L 0.35 deleterious(0.01) benign(0.012) TCGA-VQ-A91D-01 19 36106249 36106249 G A HAUS5 Missense_Mutation p.R149Q 0.21 tolerated(0.43) benign(0.041) TCGA-VQ-A91D-01 19 3612267 3612267 C T CACTIN Missense_Mutation p.R644H 0.10 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91D-01 19 36123844 36123844 C - RBM42 Frame_Shift_Del p.Q152Rfs*54 0.30 TCGA-VQ-A91D-01 19 36211183 36211183 A - KMT2B Frame_Shift_Del p.V314* 0.28 TCGA-VQ-A91D-01 19 36297624 36297624 C A PRODH2 Missense_Mutation p.G339C 0.31 tolerated(0.06) possibly_damaging(0.865) TCGA-VQ-A91D-01 19 36357214 36357214 C - KIRREL2 Frame_Shift_Del p.C652Afs*79 0.28 TCGA-VQ-A91D-01 19 36431108 36431108 C T LRFN3 Missense_Mutation p.R261C 0.45 deleterious(0) probably_damaging(0.985) TCGA-VQ-A91D-01 19 3653519 3653520 - C PIP5K1C Frame_Shift_Ins p.K231Qfs*114 0.21 TCGA-VQ-A91D-01 19 36593960 36593960 C T WDR62 Missense_Mutation p.S1149F 0.33 tolerated(0.07) benign(0.033) TCGA-VQ-A91D-01 19 36831775 36831775 C T ZFP14 Missense_Mutation p.G318E 0.38 deleterious(0.02) probably_damaging(1) TCGA-VQ-A91D-01 19 37310126 37310126 C A ZNF790 Missense_Mutation p.A374S 0.24 tolerated(0.18) possibly_damaging(0.9) TCGA-VQ-A91D-01 19 37310803 37310804 - T ZNF790 Frame_Shift_Ins p.R148Kfs*5 0.08 TCGA-VQ-A91D-01 19 3740646 3740646 G A TJP3 Silent p.R585R 0.54 TCGA-VQ-A91D-01 19 37853757 37853757 C A HKR1 Missense_Mutation p.L354I 0.30 deleterious(0.02) benign(0.008) TCGA-VQ-A91D-01 19 38077580 38077580 T - ZNF571 5'UTR 0.27 TCGA-VQ-A91D-01 19 38876577 38876577 G A GGN Missense_Mutation p.P442L 0.50 deleterious_low_confidence(0) unknown(0) TCGA-VQ-A91D-01 19 38899425 38899425 G A FAM98C Missense_Mutation p.R318H 0.23 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 19 38910500 38910500 C T RASGRP4 Silent p.T221T 0.30 TCGA-VQ-A91D-01 19 38948921 38948921 A T RYR1 Missense_Mutation p.H719L 0.31 probably_damaging(0.992) TCGA-VQ-A91D-01 19 38997511 38997511 C T RYR1 Missense_Mutation p.T2912M 0.38 possibly_damaging(0.454) TCGA-VQ-A91D-01 19 39218593 39218593 G A ACTN4 Missense_Mutation p.G782D 0.41 tolerated(0.5) benign(0.037) TCGA-VQ-A91D-01 19 39398091 39398091 C T NFKBIB Missense_Mutation p.A254V 0.10 tolerated(0.3) benign(0.403) TCGA-VQ-A91D-01 19 39406680 39406680 G A SARS2 Silent p.H450H 0.29 TCGA-VQ-A91D-01 19 3964961 3964961 G T DAPK3 Silent p.R31R 0.30 TCGA-VQ-A91D-01 19 3976715 3976715 C T EEF2 Missense_Mutation p.G805D 0.42 deleterious(0) possibly_damaging(0.886) TCGA-VQ-A91D-01 19 39847606 39847606 G A SAMD4B Missense_Mutation p.A25T 0.29 deleterious(0.01) probably_damaging(0.98) TCGA-VQ-A91D-01 19 39898719 39898719 G - ZFP36 Frame_Shift_Del p.A128Pfs*244 0.22 TCGA-VQ-A91D-01 19 39906005 39906005 C T PLEKHG2 Silent p.G135G 0.17 TCGA-VQ-A91D-01 19 39908275 39908275 G A PLEKHG2 Silent p.A275A 0.30 TCGA-VQ-A91D-01 19 39915081 39915081 A G PLEKHG2 Missense_Mutation p.D1103G 0.30 deleterious_low_confidence(0) benign(0.424) TCGA-VQ-A91D-01 19 39966719 39966720 - G SUPT5H Splice_Site p.X1010_splice 0.09 TCGA-VQ-A91D-01 19 39998899 39998899 G A DLL3 3'UTR 0.45 TCGA-VQ-A91D-01 19 40433873 40433873 C T FCGBP Silent p.L132L 0.34 TCGA-VQ-A91D-01 19 40771158 40771158 A G AKT2 Missense_Mutation p.V6A 0.28 tolerated(0.07) possibly_damaging(0.578) TCGA-VQ-A91D-01 19 40890006 40890006 C T HIPK4 Missense_Mutation p.R169H 0.39 deleterious(0.04) probably_damaging(0.998) TCGA-VQ-A91D-01 19 40901435 40901435 T C PRX Missense_Mutation p.K942E 0.37 tolerated(0.08) possibly_damaging(0.486) TCGA-VQ-A91D-01 19 41081354 41081354 C T SPTBN4 Missense_Mutation p.S2525L 0.29 deleterious(0.01) possibly_damaging(0.651) TCGA-VQ-A91D-01 19 41270951 41270951 G A SNRPA Missense_Mutation p.R243Q 0.36 deleterious(0) possibly_damaging(0.857) TCGA-VQ-A91D-01 19 41743933 41743933 C - AXL Frame_Shift_Del p.H292Ifs*5 0.32 TCGA-VQ-A91D-01 19 41932086 41932086 C T B3GNT8 Missense_Mutation p.A200T 0.28 tolerated(0.55) benign(0.007) TCGA-VQ-A91D-01 19 42126962 42126962 G - CEACAM4 Frame_Shift_Del p.P194Qfs*86 0.21 TCGA-VQ-A91D-01 19 42315314 42315314 C - CEACAM3 3'UTR 0.24 TCGA-VQ-A91D-01 19 42408202 42408204 AAG - ARHGEF1 In_Frame_Del p.K662del 0.33 TCGA-VQ-A91D-01 19 42584518 42584518 G A ZNF574 Missense_Mutation p.R587H 0.42 tolerated(0.26) possibly_damaging(0.84) TCGA-VQ-A91D-01 19 42599489 42599489 C T POU2F2 Silent p.A360A 0.29 TCGA-VQ-A91D-01 19 42738763 42738763 A G AC006486.9 Missense_Mutation p.I158T 0.16 deleterious(0) probably_damaging(0.998) TCGA-VQ-A91D-01 19 42753385 42753385 C - ERF Frame_Shift_Del p.S295Afs*16 0.30 TCGA-VQ-A91D-01 19 42857135 42857135 G A MEGF8 Missense_Mutation p.V1069M 0.24 tolerated(0.16) benign(0.008) TCGA-VQ-A91D-01 19 43259265 43259265 C T PSG8 Missense_Mutation p.R288Q 0.29 tolerated(0.45) benign(0.037) TCGA-VQ-A91D-01 19 43679376 43679376 C T PSG5 Missense_Mutation p.E319K 0.15 tolerated(0.38) benign(0.004) TCGA-VQ-A91D-01 19 43679383 43679383 C G PSG5 Missense_Mutation p.M316I 0.13 tolerated(0.84) benign(0.006) TCGA-VQ-A91D-01 19 43698558 43698558 C T PSG4 Missense_Mutation p.A393T 0.07 tolerated(0.56) benign(0.1) TCGA-VQ-A91D-01 19 43866251 43866251 A G CD177 3'UTR 0.43 TCGA-VQ-A91D-01 19 43866411 43866411 G - CD177 3'UTR 0.27 TCGA-VQ-A91D-01 19 4433404 4433404 G A CHAF1A Silent p.S847S 0.32 TCGA-VQ-A91D-01 19 44501187 44501187 T C ZNF155 Missense_Mutation p.V404A 0.33 tolerated(0.09) possibly_damaging(0.769) TCGA-VQ-A91D-01 19 44590034 44590034 G A ZNF284 Missense_Mutation p.A135T 0.13 tolerated(0.24) benign(0.288) TCGA-VQ-A91D-01 19 44934606 44934606 G T ZNF229 Missense_Mutation p.P117H 0.35 deleterious(0) benign(0.253) TCGA-VQ-A91D-01 19 45262071 45262071 G A BCL3 Missense_Mutation p.E384K 0.38 tolerated(0.08) unknown(0) TCGA-VQ-A91D-01 19 4682747 4682747 G A DPP9 Missense_Mutation p.A812V 0.53 tolerated(0.22) possibly_damaging(0.701) TCGA-VQ-A91D-01 19 4684732 4684732 G A DPP9 Silent p.D707D 0.18 TCGA-VQ-A91D-01 19 4685724 4685724 G A DPP9 Missense_Mutation p.R649W 0.25 deleterious(0.02) possibly_damaging(0.453) TCGA-VQ-A91D-01 19 47236476 47236476 C T STRN4 Missense_Mutation p.G186D 0.38 deleterious(0) possibly_damaging(0.559) TCGA-VQ-A91D-01 19 47856483 47856483 C T DHX34 Missense_Mutation p.R66C 0.23 deleterious(0) probably_damaging(0.957) TCGA-VQ-A91D-01 19 47933561 47933561 G A SLC8A2 Missense_Mutation p.R851C 0.23 deleterious(0.01) possibly_damaging(0.873) TCGA-VQ-A91D-01 19 48198166 48198166 G A GLTSCR1 Missense_Mutation p.G969R 0.28 probably_damaging(0.988) TCGA-VQ-A91D-01 19 48244228 48244228 G A EHD2 Missense_Mutation p.A391T 0.38 tolerated(0.12) benign(0.038) TCGA-VQ-A91D-01 19 48342889 48342889 G A CRX Missense_Mutation p.A189T 0.33 tolerated(0.44) benign(0.028) TCGA-VQ-A91D-01 19 48783060 48783060 T A ZNF114 Missense_Mutation p.S2T 0.31 tolerated_low_confidence(0.11) benign(0.153) TCGA-VQ-A91D-01 19 48790079 48790079 T C ZNF114 Missense_Mutation p.S400P 0.07 deleterious(0.01) benign(0.307) TCGA-VQ-A91D-01 19 48790232 48790232 A G ZNF114 3'UTR 0.44 TCGA-VQ-A91D-01 19 48908050 48908050 C T GRIN2D Silent p.I175I 0.05 TCGA-VQ-A91D-01 19 49000731 49000732 - GG LMTK3 Frame_Shift_Ins p.K1228Pfs*118 0.35 TCGA-VQ-A91D-01 19 49167451 49167451 G A NTN5 Missense_Mutation p.R307C 0.40 deleterious(0.01) benign(0.126) TCGA-VQ-A91D-01 19 49447646 49447646 G T DHDH Silent p.L259L 0.34 TCGA-VQ-A91D-01 19 49686059 49686059 G T TRPM4 Silent p.A496A 0.30 TCGA-VQ-A91D-01 19 49860566 49860566 A G TEAD2 Silent p.S101S 0.09 TCGA-VQ-A91D-01 19 50098355 50098355 G A PRR12 Missense_Mutation p.A255T 0.27 possibly_damaging(0.695) TCGA-VQ-A91D-01 19 50882023 50882023 A G NR1H2 Silent p.K239K 0.22 TCGA-VQ-A91D-01 19 50916710 50916710 A C POLD1 Missense_Mutation p.I728L 0.38 tolerated(0.07) probably_damaging(0.912) TCGA-VQ-A91D-01 19 50964816 50964816 T C MYBPC2 Silent p.Y983Y 0.42 TCGA-VQ-A91D-01 19 50979174 50979174 A G FAM71E1 Silent p.R92R 0.20 TCGA-VQ-A91D-01 19 51009714 51009714 G A JOSD2 Missense_Mutation p.R130C 0.25 deleterious(0) probably_damaging(0.998) TCGA-VQ-A91D-01 19 51135765 51135765 A C SYT3 Missense_Mutation p.L151R 0.38 tolerated(0.37) benign(0.047) TCGA-VQ-A91D-01 19 51274670 51274670 G A GPR32 Silent p.P271P 0.38 TCGA-VQ-A91D-01 19 51453154 51453154 C T KLK5 Missense_Mutation p.V98M 0.11 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91D-01 19 51559957 51559958 - C KLK13 Frame_Shift_Ins p.Q241Afs*3 0.23 TCGA-VQ-A91D-01 19 51827000 51827000 C T IGLON5 Silent p.S81S 0.26 TCGA-VQ-A91D-01 19 51870355 51870355 A - CLDND2 3'UTR 0.29 TCGA-VQ-A91D-01 19 52220272 52220272 G A HAS1 Missense_Mutation p.R293W 0.29 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 19 52507088 52507088 C T ZNF615 5'UTR 0.29 TCGA-VQ-A91D-01 19 53085456 53085456 T A ZNF701 Missense_Mutation p.D114E 0.37 deleterious(0.02) benign(0.416) TCGA-VQ-A91D-01 19 53270287 53270287 G A ZNF600 Missense_Mutation p.T241I 0.28 deleterious(0.03) probably_damaging(0.997) TCGA-VQ-A91D-01 19 53301738 53301738 C T ZNF28 3'UTR 0.46 TCGA-VQ-A91D-01 19 53625857 53625857 G T ZNF415 5'UTR 0.46 TCGA-VQ-A91D-01 19 53794366 53794366 C T BIRC8 5'UTR 0.29 TCGA-VQ-A91D-01 19 53875551 53875551 T C ZNF525 Splice_Site p.X5_splice 0.30 TCGA-VQ-A91D-01 19 54172508 54172508 C T MIR512-2 RNA 0.36 TCGA-VQ-A91D-01 19 54403953 54403953 G A PRKCG Missense_Mutation p.G509R 0.34 deleterious(0.04) probably_damaging(0.972) TCGA-VQ-A91D-01 19 54650367 54650367 C T CNOT3 Missense_Mutation p.R290C 0.29 deleterious(0) probably_damaging(0.952) TCGA-VQ-A91D-01 19 54652450 54652450 G A CNOT3 Missense_Mutation p.G460S 0.35 tolerated(1) possibly_damaging(0.862) TCGA-VQ-A91D-01 19 54823170 54823170 A G LILRA5 Missense_Mutation p.S125P 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A91D-01 19 54824291 54824291 G A LILRA5 5'UTR 0.26 TCGA-VQ-A91D-01 19 54876446 54876446 C T LAIR1 5'UTR 0.24 TCGA-VQ-A91D-01 19 55014077 55014077 C - LAIR2 5'UTR 0.25 TCGA-VQ-A91D-01 19 55019196 55019196 G A LAIR2 Missense_Mutation p.G54E 0.36 tolerated(0.29) possibly_damaging(0.718) TCGA-VQ-A91D-01 19 55329820 55329820 C T KIR3DL1 Nonsense_Mutation p.R41* 0.36 TCGA-VQ-A91D-01 19 55556549 55556549 C T RDH13 Missense_Mutation p.A297T 0.33 tolerated(0.05) benign(0.309) TCGA-VQ-A91D-01 19 55593836 55593836 G - EPS8L1 Frame_Shift_Del p.P363Rfs*12 0.41 TCGA-VQ-A91D-01 19 56090044 56090044 C T ZNF579 Missense_Mutation p.G321D 0.15 deleterious(0.01) probably_damaging(0.96) TCGA-VQ-A91D-01 19 56185490 56185490 C - U2AF2 3'UTR 0.33 TCGA-VQ-A91D-01 19 56206189 56206189 C - EPN1 Frame_Shift_Del p.P542Hfs*33 0.39 TCGA-VQ-A91D-01 19 56363551 56363551 G A NLRP4 Silent p.L35L 0.46 TCGA-VQ-A91D-01 19 56520181 56520181 C T NLRP5 Missense_Mutation p.T157M 0.21 tolerated(0.15) benign(0.004) TCGA-VQ-A91D-01 19 56896144 56896144 T C ZNF582 Silent p.L214L 0.32 TCGA-VQ-A91D-01 19 57175489 57175489 G A ZNF835 Missense_Mutation p.R360W 0.21 deleterious(0) probably_damaging(0.989) TCGA-VQ-A91D-01 19 57175862 57175862 C T ZNF835 Silent p.S235S 0.11 TCGA-VQ-A91D-01 19 57327383 57327383 G A PEG3 Silent p.S809S 0.18 TCGA-VQ-A91D-01 19 5785226 5785226 G A DUS3L Silent p.N647N 0.50 TCGA-VQ-A91D-01 19 57910688 57910688 T - ZNF548 Frame_Shift_Del p.F358Lfs*163 0.29 TCGA-VQ-A91D-01 19 58050077 58050077 C T ZNF549 Missense_Mutation p.R569C 0.31 deleterious(0.04) benign(0.036) TCGA-VQ-A91D-01 19 58084481 58084481 T C ZNF416 Missense_Mutation p.H264R 0.21 deleterious(0.03) benign(0.253) TCGA-VQ-A91D-01 19 58118746 58118746 C A ZNF530 3'UTR 0.33 TCGA-VQ-A91D-01 19 58132826 58132826 G A ZNF134 3'UTR 0.39 TCGA-VQ-A91D-01 19 58238897 58238899 CTC - ZNF671 5'UTR 0.46 TCGA-VQ-A91D-01 19 58383920 58383920 T C ZNF814 3'UTR 0.33 TCGA-VQ-A91D-01 19 58578948 58578948 A C ZNF135 Missense_Mutation p.S390R 0.35 tolerated(0.37) possibly_damaging(0.856) TCGA-VQ-A91D-01 19 58723013 58723013 G A ZNF274 Missense_Mutation p.D313N 0.25 tolerated(0.06) probably_damaging(0.923) TCGA-VQ-A91D-01 19 58806359 58806359 G T ZNF8 Missense_Mutation p.R395S 0.25 deleterious(0) probably_damaging(0.995) TCGA-VQ-A91D-01 19 58868868 58868868 G A ZNF497 Missense_Mutation p.T45M 0.32 deleterious(0.03) benign(0.369) TCGA-VQ-A91D-01 19 6042119 6042127 GCTGCACCG - RFX2 In_Frame_Del p.P63_Q65del 0.18 TCGA-VQ-A91D-01 19 615884 615884 A C HCN2 Missense_Mutation p.I694L 0.33 tolerated(0.12) benign(0.103) TCGA-VQ-A91D-01 19 6165950 6165950 C T ACSBG2 Missense_Mutation p.A221V 0.39 tolerated(0.23) benign(0.104) TCGA-VQ-A91D-01 19 6213095 6213095 G A MLLT1 Silent p.T546T 0.27 TCGA-VQ-A91D-01 19 621743 621743 G - POLRMT Frame_Shift_Del p.P652Rfs*19 0.31 TCGA-VQ-A91D-01 19 6468024 6468024 T A DENND1C Missense_Mutation p.S633C 0.35 tolerated_low_confidence(0.15) benign(0.001) TCGA-VQ-A91D-01 19 6707521 6707521 C T C3 Missense_Mutation p.R668H 0.18 deleterious(0) possibly_damaging(0.776) TCGA-VQ-A91D-01 19 7623774 7623774 G A PNPLA6 Missense_Mutation p.A1156T 0.23 deleterious(0) probably_damaging(0.998) TCGA-VQ-A91D-01 19 7625923 7625923 C T PNPLA6 Silent p.G1290G 0.41 TCGA-VQ-A91D-01 19 7712294 7712294 C - STXBP2 Frame_Shift_Del p.R533Gfs*15 0.27 TCGA-VQ-A91D-01 19 7806485 7806485 C T CD209 3'UTR 0.24 TCGA-VQ-A91D-01 19 7925456 7925456 C T EVI5L Missense_Mutation p.R462C 0.55 deleterious(0.01) possibly_damaging(0.719) TCGA-VQ-A91D-01 19 7965119 7965119 G A LRRC8E Missense_Mutation p.R571H 0.31 deleterious(0) probably_damaging(0.934) TCGA-VQ-A91D-01 19 7987550 7987550 C T SNAPC2 Silent p.S302S 0.33 TCGA-VQ-A91D-01 19 8028576 8028576 C T ELAVL1 Missense_Mutation p.G258R 0.18 tolerated(0.3) possibly_damaging(0.769) TCGA-VQ-A91D-01 19 8203405 8203405 G A FBN3 Silent p.R303R 0.35 TCGA-VQ-A91D-01 19 8464873 8464873 A T RAB11B Missense_Mutation p.D56V 0.26 deleterious_low_confidence(0) possibly_damaging(0.88) TCGA-VQ-A91D-01 19 8468541 8468541 C G RAB11B 3'UTR 0.27 TCGA-VQ-A91D-01 19 8564247 8564247 C T PRAM1 Missense_Mutation p.G149S 0.39 tolerated(1) benign(0.036) TCGA-VQ-A91D-01 19 8616644 8616644 T G MYO1F Missense_Mutation p.S251R 0.27 tolerated(0.3) benign(0.006) TCGA-VQ-A91D-01 19 890972 890972 C T MED16 Missense_Mutation p.D54N 0.40 tolerated(0.22) possibly_damaging(0.555) TCGA-VQ-A91D-01 19 9010648 9010648 T C MUC16 Missense_Mutation p.T13005A 0.28 benign(0.117) TCGA-VQ-A91D-01 19 9020827 9020827 A G MUC16 Silent p.G12425G 0.06 TCGA-VQ-A91D-01 19 9089836 9089836 G T MUC16 Missense_Mutation p.A660D 0.39 unknown(0) TCGA-VQ-A91D-01 19 9090795 9090795 G A MUC16 Silent p.A340A 0.46 TCGA-VQ-A91D-01 19 9449960 9449960 T C ZNF559 Missense_Mutation p.V42A 0.27 deleterious(0) possibly_damaging(0.822) TCGA-VQ-A91D-01 19 9451823 9451823 A T ZNF559 Missense_Mutation p.N69I 0.28 deleterious(0.03) possibly_damaging(0.902) TCGA-VQ-A91D-01 1 100575913 100575913 C T SASS6 Missense_Mutation p.E266K 0.36 deleterious(0) possibly_damaging(0.843) TCGA-VQ-A91D-01 1 101491009 101491011 GAG - DPH5 5'UTR 0.26 TCGA-VQ-A91D-01 1 10155583 10155583 C A UBE4B Missense_Mutation p.S92R 0.29 deleterious(0) benign(0.307) TCGA-VQ-A91D-01 1 10182093 10182093 C T UBE4B Silent p.L505L 0.51 TCGA-VQ-A91D-01 1 1019524 1019524 C T C1orf159 Intron 0.22 TCGA-VQ-A91D-01 1 10318550 10318550 G A KIF1B Splice_Site p.X62_splice 0.35 TCGA-VQ-A91D-01 1 10355740 10355740 C T KIF1B Missense_Mutation p.R519W 0.39 deleterious(0.03) possibly_damaging(0.721) TCGA-VQ-A91D-01 1 10473239 10473239 G T PGD Missense_Mutation p.G259W 0.39 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 1 10720112 10720112 G A CASZ1 Silent p.N329N 0.26 TCGA-VQ-A91D-01 1 108690943 108690943 G T SLC25A24 Silent p.S296S 0.31 TCGA-VQ-A91D-01 1 109440696 109440696 C T GPSM2 Missense_Mutation p.A177V 0.31 tolerated(0.06) benign(0.14) TCGA-VQ-A91D-01 1 109565981 109565981 G T WDR47 Missense_Mutation p.L52M 0.27 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91D-01 1 109795317 109795317 C T CELSR2 Silent p.I872I 0.29 TCGA-VQ-A91D-01 1 109806952 109806952 G A CELSR2 Missense_Mutation p.G1752S 0.48 tolerated(0.67) benign(0.015) TCGA-VQ-A91D-01 1 110300580 110300580 T - EPS8L3 Frame_Shift_Del p.N274Tfs*33 0.35 TCGA-VQ-A91D-01 1 110923703 110923704 - T SLC16A4 Frame_Shift_Ins p.R143Tfs*31 0.36 TCGA-VQ-A91D-01 1 111490810 111490810 T A LRIF1 Missense_Mutation p.E694V 0.32 deleterious(0.01) possibly_damaging(0.895) TCGA-VQ-A91D-01 1 11300434 11300434 G A MTOR Missense_Mutation p.T571M 0.34 tolerated(0.18) possibly_damaging(0.469) TCGA-VQ-A91D-01 1 114248691 114248691 G A PHTF1 Missense_Mutation p.R498C 0.27 deleterious(0) possibly_damaging(0.459) TCGA-VQ-A91D-01 1 114309815 114309815 C T RSBN1 Missense_Mutation p.R614H 0.15 deleterious(0) probably_damaging(0.996) TCGA-VQ-A91D-01 1 114377609 114377609 G T PTPN22 Missense_Mutation p.A606D 0.32 tolerated(0.16) benign(0.149) TCGA-VQ-A91D-01 1 114682276 114682276 C A SYT6 Missense_Mutation p.R73L 0.23 deleterious(0.01) possibly_damaging(0.777) TCGA-VQ-A91D-01 1 115118337 115118337 T - BCAS2 Frame_Shift_Del p.N98Mfs*10 0.30 TCGA-VQ-A91D-01 1 115218196 115218196 G A AMPD1 Missense_Mutation p.A578V 0.12 tolerated(0.26) benign(0.005) TCGA-VQ-A91D-01 1 115828972 115828972 C T NGF Missense_Mutation p.A149T 0.32 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91D-01 1 117127315 117127315 G A IGSF3 Missense_Mutation p.R954W 0.17 tolerated(0.21) possibly_damaging(0.762) TCGA-VQ-A91D-01 1 117484457 117484457 A G PTGFRN Missense_Mutation p.D57G 0.42 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 1 117491919 117491919 T C PTGFRN Missense_Mutation p.V313A 0.32 deleterious(0) possibly_damaging(0.454) TCGA-VQ-A91D-01 1 117629079 117629079 G A TTF2 Missense_Mutation p.V699M 0.38 deleterious(0.01) possibly_damaging(0.844) TCGA-VQ-A91D-01 1 11808653 11808653 T G AGTRAP Missense_Mutation p.L117R 0.28 deleterious(0.04) possibly_damaging(0.548) TCGA-VQ-A91D-01 1 11854112 11854112 G A MTHFR Missense_Mutation p.A461V 0.34 tolerated(0.09) benign(0.426) TCGA-VQ-A91D-01 1 11887243 11887243 T G CLCN6 Missense_Mutation p.S269A 0.30 tolerated(1) benign(0.217) TCGA-VQ-A91D-01 1 11888529 11888530 - A CLCN6 Frame_Shift_Ins p.C326Mfs*46 0.25 TCGA-VQ-A91D-01 1 11898429 11898429 C T CLCN6 Missense_Mutation p.A778V 0.20 tolerated(0.33) benign(0.003) TCGA-VQ-A91D-01 1 120165471 120165471 C T ZNF697 Missense_Mutation p.G499S 0.35 deleterious(0.01) probably_damaging(1) TCGA-VQ-A91D-01 1 12401916 12401916 T C VPS13D Silent p.F2902F 0.11 TCGA-VQ-A91D-01 1 12422838 12422838 C T VPS13D Missense_Mutation p.R3402C 0.34 possibly_damaging(0.902) TCGA-VQ-A91D-01 1 1267064 1267064 G A TAS1R3 Missense_Mutation p.V80M 0.38 tolerated(0.05) possibly_damaging(0.683) TCGA-VQ-A91D-01 1 1322784 1322784 G A CCNL2 Missense_Mutation p.R464W 0.33 deleterious(0) possibly_damaging(0.847) TCGA-VQ-A91D-01 1 13719053 13719053 T G PRAMEF17 3'UTR 0.25 TCGA-VQ-A91D-01 1 14108520 14108521 - A PRDM2 Frame_Shift_Ins p.M1412Nfs*5 0.32 TCGA-VQ-A91D-01 1 14108560 14108560 A - PRDM2 Frame_Shift_Del p.N1426Ifs*3 0.43 TCGA-VQ-A91D-01 1 145537735 145537736 AG - ITGA10 Splice_Site p.X861_splice 0.16 TCGA-VQ-A91D-01 1 147380146 147380146 G A GJA8 Missense_Mutation p.G22S 0.41 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91D-01 1 14925433 14925434 - C KAZN 5'UTR 0.21 TCGA-VQ-A91D-01 1 149783769 149783769 C T HIST2H2BF Missense_Mutation p.S37N 0.29 deleterious_low_confidence(0.04) benign(0.085) TCGA-VQ-A91D-01 1 149916154 149916154 G A OTUD7B Missense_Mutation p.R712W 0.34 deleterious_low_confidence(0) possibly_damaging(0.796) TCGA-VQ-A91D-01 1 149936137 149936137 G A OTUD7B Intron 0.10 TCGA-VQ-A91D-01 1 150691974 150691974 G A HORMAD1 Missense_Mutation p.T3I 0.27 deleterious(0.01) probably_damaging(1) TCGA-VQ-A91D-01 1 150788758 150788758 T C ARNT Missense_Mutation p.T643A 0.31 tolerated_low_confidence(0.25) benign(0.047) TCGA-VQ-A91D-01 1 150818758 150818758 C T ARNT Missense_Mutation p.D70N 0.20 tolerated(0.08) probably_damaging(0.988) TCGA-VQ-A91D-01 1 151288319 151288319 G A PI4KB Silent p.A225A 0.08 TCGA-VQ-A91D-01 1 151823532 151823532 G - THEM5 Frame_Shift_Del p.P154Qfs*12 0.29 TCGA-VQ-A91D-01 1 152085419 152085419 C T TCHH Missense_Mutation p.A92T 0.44 unknown(0) TCGA-VQ-A91D-01 1 152185789 152185789 G A HRNR Silent p.H2772H 0.63 TCGA-VQ-A91D-01 1 152190959 152190959 C T HRNR Missense_Mutation p.G1049D 0.29 unknown(0) TCGA-VQ-A91D-01 1 152193501 152193501 A T HRNR Missense_Mutation p.S202T 0.27 unknown(0) TCGA-VQ-A91D-01 1 152324178 152324178 A G FLG2 Silent p.S2028S 0.33 TCGA-VQ-A91D-01 1 152326882 152326882 C T FLG2 Missense_Mutation p.G1127D 0.27 unknown(0) TCGA-VQ-A91D-01 1 153587788 153587788 C T S100A14 Missense_Mutation p.V34M 0.36 tolerated(0.07) possibly_damaging(0.714) TCGA-VQ-A91D-01 1 153750963 153750963 C T SLC27A3 Missense_Mutation p.R508C 0.25 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 1 153991460 153991460 C - NUP210L Frame_Shift_Del p.T1535Lfs*3 0.24 TCGA-VQ-A91D-01 1 154224078 154224078 C T UBAP2L Missense_Mutation p.T538M 0.31 deleterious(0) unknown(0) TCGA-VQ-A91D-01 1 154461651 154461651 C - SHE Frame_Shift_Del p.R302Gfs*56 0.27 TCGA-VQ-A91D-01 1 154493908 154493908 C T TDRD10 Missense_Mutation p.P108S 0.27 tolerated(0.5) benign(0.001) TCGA-VQ-A91D-01 1 154999106 154999106 C T DCST2 Silent p.L476L 0.33 TCGA-VQ-A91D-01 1 155263110 155263110 C T PKLR Missense_Mutation p.V432M 0.26 tolerated(0.24) benign(0.257) TCGA-VQ-A91D-01 1 155311867 155311867 C T ASH1L Missense_Mutation p.D2774N 0.07 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-VQ-A91D-01 1 155931686 155931686 G A ARHGEF2 Missense_Mutation p.R412C 0.32 tolerated(0.16) benign(0) TCGA-VQ-A91D-01 1 156011686 156011686 G A UBQLN4 Silent p.T481T 0.42 TCGA-VQ-A91D-01 1 156084943 156084943 G T LMNA Missense_Mutation p.K78N 0.46 deleterious(0) probably_damaging(0.995) TCGA-VQ-A91D-01 1 156568795 156568795 G T GPATCH4 Missense_Mutation p.A20D 0.28 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 1 156714127 156714127 T - HDGF Frame_Shift_Del p.K122Rfs*49 0.28 TCGA-VQ-A91D-01 1 1569993 1569994 - G MMP23B Frame_Shift_Ins p.*391Lfs*11 0.24 TCGA-VQ-A91D-01 1 158325633 158325633 G A CD1E Nonsense_Mutation p.W214* 0.18 TCGA-VQ-A91D-01 1 158576771 158576771 G A OR10Z1 Silent p.T181T 0.30 TCGA-VQ-A91D-01 1 158585096 158585096 T C SPTA1 Missense_Mutation p.Y2233C 0.36 deleterious(0) probably_damaging(0.984) TCGA-VQ-A91D-01 1 158613185 158613186 - A SPTA1 Frame_Shift_Ins p.A1457Cfs*2 0.26 TCGA-VQ-A91D-01 1 158725046 158725046 C A OR6K6 Silent p.A147A 0.16 TCGA-VQ-A91D-01 1 158725437 158725437 T - OR6K6 Frame_Shift_Del p.F279Lfs*9 0.26 TCGA-VQ-A91D-01 1 15894647 15894647 T G DNAJC16 Missense_Mutation p.I775S 0.11 deleterious(0) probably_damaging(0.917) TCGA-VQ-A91D-01 1 160063925 160063925 G - IGSF8 Frame_Shift_Del p.P160Qfs*15 0.33 TCGA-VQ-A91D-01 1 160208407 160208407 G A DCAF8 Missense_Mutation p.A285V 0.26 deleterious(0.01) benign(0.248) TCGA-VQ-A91D-01 1 160460024 160460024 A G SLAMF6 Missense_Mutation p.S254P 0.27 tolerated(0.23) possibly_damaging(0.795) TCGA-VQ-A91D-01 1 160604638 160604638 G A SLAMF1 Silent p.N155N 0.28 TCGA-VQ-A91D-01 1 160920898 160920898 C T ITLN2 Missense_Mutation p.D126N 0.21 deleterious(0.01) benign(0.163) TCGA-VQ-A91D-01 1 161021110 161021121 GGCCAGGGCCAA - ARHGAP30 In_Frame_Del p.L468_G471del 0.26 TCGA-VQ-A91D-01 1 16254839 16254839 C T SPEN Nonsense_Mutation p.R702* 0.42 TCGA-VQ-A91D-01 1 16258456 16258456 C A SPEN Silent p.V1907V 0.09 TCGA-VQ-A91D-01 1 16269648 16269648 T C ZBTB17 Missense_Mutation p.H580R 0.08 deleterious(0) probably_damaging(0.979) TCGA-VQ-A91D-01 1 16274793 16274793 G A ZBTB17 Silent p.N66N 0.38 TCGA-VQ-A91D-01 1 16356552 16356552 G - CLCNKA Frame_Shift_Del p.Y466Mfs*13 0.18 TCGA-VQ-A91D-01 1 16462199 16462199 G - EPHA2 Frame_Shift_Del p.P460Rfs*33 0.21 TCGA-VQ-A91D-01 1 16525156 16525156 C T ARHGEF19 Missense_Mutation p.A779T 0.39 deleterious(0.02) probably_damaging(0.998) TCGA-VQ-A91D-01 1 165324757 165324757 C T LMX1A Missense_Mutation p.A14T 0.25 tolerated_low_confidence(0.18) benign(0.028) TCGA-VQ-A91D-01 1 166818546 166818546 G A POGK Missense_Mutation p.A244T 0.37 tolerated(0.43) probably_damaging(0.993) TCGA-VQ-A91D-01 1 166926087 166926087 C T ILDR2 Missense_Mutation p.A128T 0.28 deleterious(0) probably_damaging(0.998) TCGA-VQ-A91D-01 1 167025001 167025001 C T GPA33 Silent p.T219T 0.07 TCGA-VQ-A91D-01 1 167339406 167339406 C T POU2F1 Silent p.L79L 0.27 TCGA-VQ-A91D-01 1 168065975 168065975 G A GPR161 Silent p.I310I 0.27 TCGA-VQ-A91D-01 1 169790867 169790867 T - C1orf112 Frame_Shift_Del p.F252Lfs*51 0.34 TCGA-VQ-A91D-01 1 171956881 171956881 C T DNM3 Silent p.R107R 0.32 TCGA-VQ-A91D-01 1 17313329 17313329 G A ATP13A2 Missense_Mutation p.A1069V 0.40 tolerated(0.36) benign(0.18) TCGA-VQ-A91D-01 1 17322661 17322661 T C ATP13A2 Splice_Site p.X452_splice 0.10 TCGA-VQ-A91D-01 1 174979137 174979137 C T CACYBP Silent p.D203D 0.08 TCGA-VQ-A91D-01 1 17556684 17556684 G A PADI1 Missense_Mutation p.R345Q 0.42 tolerated(0.06) benign(0.116) TCGA-VQ-A91D-01 1 17681067 17681067 G - PADI4 Frame_Shift_Del p.G400Vfs*13 0.29 TCGA-VQ-A91D-01 1 178425921 178425921 T A RASAL2 Missense_Mutation p.N759K 0.34 deleterious(0) benign(0.114) TCGA-VQ-A91D-01 1 179064147 179064147 G T TOR3A Missense_Mutation p.D330Y 0.38 deleterious(0) probably_damaging(0.952) TCGA-VQ-A91D-01 1 179084038 179084039 - G ABL2 Frame_Shift_Ins p.K513* 0.25 TCGA-VQ-A91D-01 1 179851699 179851699 C A TOR1AIP1 Missense_Mutation p.P21H 0.19 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-VQ-A91D-01 1 179965890 179965890 C T CEP350 Nonsense_Mutation p.R200* 0.33 TCGA-VQ-A91D-01 1 181721359 181721359 G A CACNA1E Missense_Mutation p.R1271H 0.27 deleterious(0) probably_damaging(0.957) TCGA-VQ-A91D-01 1 183083772 183083772 C T LAMC1 Silent p.G376G 0.14 TCGA-VQ-A91D-01 1 183515227 183515227 C T SMG7 Missense_Mutation p.P787S 0.39 tolerated_low_confidence(0.26) benign(0.05) TCGA-VQ-A91D-01 1 184677466 184677466 T A EDEM3 Missense_Mutation p.I620F 0.14 deleterious(0.05) benign(0.001) TCGA-VQ-A91D-01 1 19236959 19236959 A C IFFO2 Missense_Mutation p.L442R 0.38 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91D-01 1 193051738 193051738 A C TROVE2 Missense_Mutation p.Q455P 0.25 tolerated(0.27) benign(0.16) TCGA-VQ-A91D-01 1 19481524 19481524 A T UBR4 Missense_Mutation p.S2116T 0.29 probably_damaging(0.991) TCGA-VQ-A91D-01 1 19665888 19665888 C T CAPZB 3'UTR 0.28 TCGA-VQ-A91D-01 1 198665996 198665996 T A PTPRC Missense_Mutation p.S86T 0.30 tolerated_low_confidence(0.3) benign(0.197) TCGA-VQ-A91D-01 1 200017639 200017639 C T NR5A2 Missense_Mutation p.A268V 0.22 tolerated(0.09) benign(0.028) TCGA-VQ-A91D-01 1 200377489 200377489 C A ZNF281 Missense_Mutation p.G449C 0.31 deleterious(0.01) possibly_damaging(0.87) TCGA-VQ-A91D-01 1 200776602 200776602 T - CAMSAP2 Frame_Shift_Del p.Q169Kfs*17 0.28 TCGA-VQ-A91D-01 1 200822549 200822549 A - CAMSAP2 Frame_Shift_Del p.K1252Nfs*19 0.47 TCGA-VQ-A91D-01 1 201054693 201054693 G A CACNA1S Missense_Mutation p.R341W 0.13 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 1 201104872 201104872 C T TMEM9 Silent p.V157V 0.38 TCGA-VQ-A91D-01 1 201333480 201333480 G T TNNT2 Silent p.A135A 0.12 TCGA-VQ-A91D-01 1 20141644 20141644 G A RNF186 5'UTR 0.19 TCGA-VQ-A91D-01 1 201845174 201845174 G A IPO9 Missense_Mutation p.G1040S 0.24 tolerated(0.07) benign(0.26) TCGA-VQ-A91D-01 1 202092179 202092179 C A GPR37L1 Missense_Mutation p.L30M 0.47 tolerated(0.11) benign(0.09) TCGA-VQ-A91D-01 1 202127349 202127349 C T PTPN7 Missense_Mutation p.R173Q 0.56 tolerated(0.06) benign(0.004) TCGA-VQ-A91D-01 1 202304927 202304927 T C UBE2T 5'UTR 0.12 TCGA-VQ-A91D-01 1 202698141 202698141 G - KDM5B 3'UTR 0.24 TCGA-VQ-A91D-01 1 202910577 202910577 T C ADIPOR1 3'UTR 0.30 TCGA-VQ-A91D-01 1 204083484 204083484 A C SOX13 Missense_Mutation p.E85D 0.42 tolerated(0.08) benign(0.003) TCGA-VQ-A91D-01 1 204228771 204228771 G A PLEKHA6 Nonsense_Mutation p.R208* 0.28 TCGA-VQ-A91D-01 1 204438072 204438072 G - PIK3C2B Frame_Shift_Del p.R287Afs*92 0.29 TCGA-VQ-A91D-01 1 205035007 205035007 G A CNTN2 Missense_Mutation p.A596T 0.29 tolerated(0.5) benign(0.03) TCGA-VQ-A91D-01 1 205130458 205130458 G A DSTYK Missense_Mutation p.R626W 0.30 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 1 206224583 206224583 C T AVPR1B Missense_Mutation p.A48V 0.38 deleterious(0) probably_damaging(0.951) TCGA-VQ-A91D-01 1 207737330 207737330 G A CR1 Silent p.A1236A 0.38 TCGA-VQ-A91D-01 1 20980203 20980205 CCT - DDOST In_Frame_Del p.E303del 0.29 TCGA-VQ-A91D-01 1 209807862 209807862 G T LAMB3 Missense_Mutation p.P165H 0.47 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91D-01 1 209811304 209811304 C G LAMB3 Missense_Mutation p.Q107H 0.33 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91D-01 1 209950730 209950730 G A TRAF3IP3 Missense_Mutation p.A363T 0.11 tolerated(0.1) benign(0.033) TCGA-VQ-A91D-01 1 21031089 21031089 G A KIF17 Missense_Mutation p.T325M 0.28 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 1 211545469 211545469 G A TRAF5 Splice_Site p.X367_splice 0.30 TCGA-VQ-A91D-01 1 213341219 213341219 G A RPS6KC1 Missense_Mutation p.R285H 0.25 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 1 213415019 213415019 C T RPS6KC1 Missense_Mutation p.L734F 0.31 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91D-01 1 213436149 213436152 TCAT - RPS6KC1 Frame_Shift_Del p.I1028Nfs*36 0.35 TCGA-VQ-A91D-01 1 217793793 217793793 T C GPATCH2 Silent p.A35A 0.17 TCGA-VQ-A91D-01 1 220156157 220156157 G A EPRS Silent p.T1110T 0.28 TCGA-VQ-A91D-01 1 220300153 220300153 A T IARS2 Missense_Mutation p.D602V 0.34 deleterious(0) probably_damaging(0.958) TCGA-VQ-A91D-01 1 220330768 220330768 G A RAB3GAP2 Silent p.S1133S 0.27 TCGA-VQ-A91D-01 1 22048172 22048172 A G USP48 Silent p.V578V 0.41 TCGA-VQ-A91D-01 1 221054577 221054577 C T HLX Missense_Mutation p.H212Y 0.08 deleterious(0.02) benign(0.308) TCGA-VQ-A91D-01 1 22151302 22151302 C A LDLRAD2 3'UTR 0.46 TCGA-VQ-A91D-01 1 22154829 22154829 G A HSPG2 Missense_Mutation p.R4110C 0.26 probably_damaging(0.927) TCGA-VQ-A91D-01 1 22159866 22159866 G A HSPG2 Missense_Mutation p.P3664S 0.32 probably_damaging(0.998) TCGA-VQ-A91D-01 1 221875828 221875828 C T DUSP10 Missense_Mutation p.E459K 0.44 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 1 222742907 222742907 T C TAF1A Missense_Mutation p.Y280C 0.30 deleterious(0) probably_damaging(0.983) TCGA-VQ-A91D-01 1 223164003 223164003 C G DISP1 Silent p.V192V 0.06 TCGA-VQ-A91D-01 1 223176720 223176720 C T DISP1 Missense_Mutation p.R661W 0.39 deleterious(0) probably_damaging(0.993) TCGA-VQ-A91D-01 1 223283695 223283695 A - TLR5 3'UTR 0.48 TCGA-VQ-A91D-01 1 223284595 223284595 C T TLR5 Nonsense_Mutation p.W593* 0.31 TCGA-VQ-A91D-01 1 223947018 223947018 C T CAPN2 Missense_Mutation p.T455M 0.13 tolerated(0.22) probably_damaging(0.975) TCGA-VQ-A91D-01 1 223947083 223947083 C T CAPN2 Silent p.L477L 0.18 TCGA-VQ-A91D-01 1 223947141 223947141 A T CAPN2 Missense_Mutation p.D496V 0.31 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 1 22446719 22446719 G A WNT4 Missense_Mutation p.R294C 0.27 deleterious(0) probably_damaging(0.995) TCGA-VQ-A91D-01 1 226109312 226109312 A G RP4-559A3.7 Silent p.G117G 0.29 TCGA-VQ-A91D-01 1 226349368 226349368 G A ACBD3 Missense_Mutation p.R198W 0.19 deleterious(0) possibly_damaging(0.689) TCGA-VQ-A91D-01 1 227081781 227081781 C T PSEN2 Silent p.S382S 0.33 TCGA-VQ-A91D-01 1 227171488 227171488 G A ADCK3 Missense_Mutation p.V397M 0.35 deleterious(0) probably_damaging(0.993) TCGA-VQ-A91D-01 1 227223278 227223278 A G CDC42BPA Missense_Mutation p.V1042A 0.25 tolerated(0.47) benign(0.001) TCGA-VQ-A91D-01 1 227920091 227920091 T C JMJD4 3'UTR 0.39 TCGA-VQ-A91D-01 1 228294401 228294401 C T MRPL55 3'UTR 0.35 TCGA-VQ-A91D-01 1 228336461 228336461 C - GUK1 Frame_Shift_Del p.P213Lfs*56 0.38 TCGA-VQ-A91D-01 1 228346075 228346075 C T GJC2 Missense_Mutation p.R206W 0.39 deleterious(0) probably_damaging(0.99) TCGA-VQ-A91D-01 1 228451914 228451914 C A OBSCN Silent p.A1745A 0.34 TCGA-VQ-A91D-01 1 228462473 228462473 C T OBSCN Silent p.L2337L 0.31 TCGA-VQ-A91D-01 1 228495174 228495174 G A OBSCN Silent p.T5093T 0.30 TCGA-VQ-A91D-01 1 228504505 228504505 G - OBSCN Frame_Shift_Del p.V5418Wfs*79 0.31 TCGA-VQ-A91D-01 1 228556542 228556542 C T OBSCN Silent p.F7586F 0.34 TCGA-VQ-A91D-01 1 228562291 228562292 - C OBSCN Frame_Shift_Ins p.L8460Pfs*27 0.26 TCGA-VQ-A91D-01 1 229613414 229613414 G T NUP133 Silent p.T562T 0.36 TCGA-VQ-A91D-01 1 230468691 230468691 C - PGBD5 Frame_Shift_Del p.G322Afs*7 0.17 TCGA-VQ-A91D-01 1 231056309 231056309 G A TTC13 Missense_Mutation p.R644W 0.36 deleterious(0) probably_damaging(0.959) TCGA-VQ-A91D-01 1 23233221 23233221 G A EPHB2 Missense_Mutation p.C637Y 0.19 tolerated(0.14) benign(0.159) TCGA-VQ-A91D-01 1 232534756 232534756 G T SIPA1L2 3'UTR 0.36 TCGA-VQ-A91D-01 1 233497874 233497874 C T MLK4 Missense_Mutation p.R463C 0.34 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 1 234742975 234742975 C T IRF2BP2 Missense_Mutation p.V558M 0.34 deleterious(0) probably_damaging(0.969) TCGA-VQ-A91D-01 1 235964335 235964335 C T LYST Missense_Mutation p.E1259K 0.26 tolerated(0.05) benign(0.002) TCGA-VQ-A91D-01 1 235973626 235973626 G T LYST Silent p.S164S 0.36 TCGA-VQ-A91D-01 1 236306034 236306034 C - GPR137B Frame_Shift_Del p.Y40Tfs*2 0.21 TCGA-VQ-A91D-01 1 237023178 237023178 A C MTR Silent p.R667R 0.36 TCGA-VQ-A91D-01 1 237729932 237729932 T C RYR2 Missense_Mutation p.Y1094H 0.09 probably_damaging(0.973) TCGA-VQ-A91D-01 1 237787116 237787116 G A RYR2 Missense_Mutation p.E1990K 0.22 benign(0.277) TCGA-VQ-A91D-01 1 240371639 240371639 C T FMN2 Missense_Mutation p.P1176L 0.25 unknown(0) TCGA-VQ-A91D-01 1 240656712 240656712 G A GREM2 Missense_Mutation p.R22W 0.35 deleterious(0) possibly_damaging(0.836) TCGA-VQ-A91D-01 1 245848988 245848988 C T KIF26B Silent p.G901G 0.32 TCGA-VQ-A91D-01 1 247875358 247875358 G A OR6F1 Missense_Mutation p.R234W 0.28 tolerated(0.1) benign(0.045) TCGA-VQ-A91D-01 1 248004875 248004875 G A OR11L1 Silent p.G108G 0.30 TCGA-VQ-A91D-01 1 24861819 24861819 G A RCAN3 3'UTR 0.32 TCGA-VQ-A91D-01 1 24993349 24993349 C T SRRM1 Nonsense_Mutation p.R558* 0.24 TCGA-VQ-A91D-01 1 25228898 25228898 C T RUNX3 Silent p.G335G 0.18 TCGA-VQ-A91D-01 1 2528025 2528025 G A MMEL1 Missense_Mutation p.A459V 0.26 deleterious(0.01) possibly_damaging(0.658) TCGA-VQ-A91D-01 1 25553997 25553997 A G SYF2 Missense_Mutation p.Y135H 0.36 tolerated(0.06) probably_damaging(0.914) TCGA-VQ-A91D-01 1 25611088 25611088 C T RHD Missense_Mutation p.A58V 0.14 tolerated(0.94) possibly_damaging(0.684) TCGA-VQ-A91D-01 1 26514732 26514732 C T CNKSR1 Missense_Mutation p.R488C 0.17 deleterious(0) probably_damaging(0.991) TCGA-VQ-A91D-01 1 26603083 26603083 C T CEP85 Missense_Mutation p.R654C 0.27 tolerated(0.07) probably_damaging(0.988) TCGA-VQ-A91D-01 1 27057947 27057947 C A ARID1A Nonsense_Mutation p.S552* 0.34 TCGA-VQ-A91D-01 1 27101486 27101486 C - ARID1A Frame_Shift_Del p.L1591Cfs*21 0.30 TCGA-VQ-A91D-01 1 27332947 27332947 C T FAM46B Missense_Mutation p.E256K 0.09 tolerated(0.14) benign(0.008) TCGA-VQ-A91D-01 1 27680355 27680356 CT - SYTL1 3'UTR 0.34 TCGA-VQ-A91D-01 1 27686460 27686460 C T MAP3K6 Silent p.S736S 0.39 TCGA-VQ-A91D-01 1 27736691 27736691 C A WASF2 Silent p.V278V 0.24 TCGA-VQ-A91D-01 1 28365389 28365389 C T EYA3 Missense_Mutation p.R62H 0.22 tolerated(0.05) probably_damaging(0.921) TCGA-VQ-A91D-01 1 28793093 28793093 G A PHACTR4 Missense_Mutation p.A223T 0.34 tolerated(0.25) benign(0.037) TCGA-VQ-A91D-01 1 28906913 28906913 G A TRNAU1AP 3'Flank 0.32 TCGA-VQ-A91D-01 1 2939246 2939246 G A ACTRT2 Silent p.T332T 0.44 TCGA-VQ-A91D-01 1 29447576 29447576 A G TMEM200B Silent p.I255I 0.21 TCGA-VQ-A91D-01 1 2985766 2985766 T C PRDM16 5'Flank 0.33 TCGA-VQ-A91D-01 1 31194148 31194148 A G MATN1 Intron 0.39 TCGA-VQ-A91D-01 1 32119550 32119550 C T COL16A1 Silent p.P1484P 0.30 TCGA-VQ-A91D-01 1 32670875 32670875 C A CCDC28B 3'UTR 0.38 TCGA-VQ-A91D-01 1 32849629 32849629 G A BSDC1 Silent p.G70G 0.21 TCGA-VQ-A91D-01 1 33058648 33058648 G A ZBTB8A Missense_Mutation p.R39Q 0.31 probably_damaging(1) TCGA-VQ-A91D-01 1 33760862 33760862 G A ZNF362 Missense_Mutation p.A368T 0.37 deleterious(0) probably_damaging(0.997) TCGA-VQ-A91D-01 1 3386026 3386028 CTC - ARHGEF16 In_Frame_Del p.S298del 0.39 TCGA-VQ-A91D-01 1 34076708 34076708 G A CSMD2 Silent p.H2052H 0.39 TCGA-VQ-A91D-01 1 34166249 34166249 C T CSMD2 Missense_Mutation p.A1161T 0.25 tolerated(0.17) possibly_damaging(0.662) TCGA-VQ-A91D-01 1 3548140 3548140 C T WRAP73 Missense_Mutation p.R377H 0.41 deleterious(0) possibly_damaging(0.721) TCGA-VQ-A91D-01 1 35650166 35650166 G A SFPQ Missense_Mutation p.A672V 0.44 tolerated(0.11) benign(0.001) TCGA-VQ-A91D-01 1 36023761 36023761 A G NCDN 5'UTR 0.07 TCGA-VQ-A91D-01 1 36383195 36383195 T A AGO1 Missense_Mutation p.I677K 0.08 deleterious(0) possibly_damaging(0.868) TCGA-VQ-A91D-01 1 36859668 36859668 C T LSM10 Silent p.L21L 0.29 TCGA-VQ-A91D-01 1 36932352 36932352 G T CSF3R Missense_Mutation p.P733Q 0.26 tolerated(0.24) probably_damaging(0.94) TCGA-VQ-A91D-01 1 36937223 36937223 C T CSF3R Missense_Mutation p.G366R 0.30 deleterious(0.04) possibly_damaging(0.801) TCGA-VQ-A91D-01 1 37499622 37499622 G A GRIK3 Missense_Mutation p.R30C 0.32 tolerated(0.19) benign(0.276) TCGA-VQ-A91D-01 1 3768869 3768869 G A CEP104 Missense_Mutation p.R35W 0.11 deleterious(0) probably_damaging(0.988) TCGA-VQ-A91D-01 1 38227485 38227485 G T EPHA10 Silent p.R148R 0.44 TCGA-VQ-A91D-01 1 38261455 38261455 C T MANEAL Silent p.N199N 0.33 TCGA-VQ-A91D-01 1 38262492 38262492 C T MANEAL Missense_Mutation p.T246M 0.30 deleterious(0) benign(0.014) TCGA-VQ-A91D-01 1 38274887 38274887 A G C1orf122 3'UTR 0.28 TCGA-VQ-A91D-01 1 38334189 38334189 C T INPP5B Missense_Mutation p.R762Q 0.29 deleterious(0.04) benign(0.082) TCGA-VQ-A91D-01 1 38409550 38409550 C T INPP5B Silent p.T56T 0.30 TCGA-VQ-A91D-01 1 39341724 39341724 A G GJA9 Missense_Mutation p.I16T 0.05 deleterious(0.05) benign(0.054) TCGA-VQ-A91D-01 1 39776636 39776636 C A MACF1 Silent p.A1083A 0.25 TCGA-VQ-A91D-01 1 40137641 40137641 C A NT5C1A Missense_Mutation p.A24S 0.21 tolerated_low_confidence(0.61) unknown(0) TCGA-VQ-A91D-01 1 41303445 41303445 C T KCNQ4 Silent p.R618R 0.60 TCGA-VQ-A91D-01 1 42047716 42047716 C T HIVEP3 Missense_Mutation p.G918E 0.26 probably_damaging(1) TCGA-VQ-A91D-01 1 42880572 42880572 C - RIMKLA Frame_Shift_Del p.P369Hfs*20 0.25 TCGA-VQ-A91D-01 1 43783567 43783567 G A TIE1 Missense_Mutation p.A916T 0.29 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91D-01 1 43783709 43783709 C T TIE1 Missense_Mutation p.A963V 0.39 tolerated(1) benign(0.015) TCGA-VQ-A91D-01 1 43828649 43828649 C T CDC20 Missense_Mutation p.T450I 0.45 deleterious(0.04) benign(0.021) TCGA-VQ-A91D-01 1 43893109 43893109 G T SZT2 Silent p.L1140L 0.19 TCGA-VQ-A91D-01 1 43904424 43904424 C T SZT2 Missense_Mutation p.A2131V 0.24 deleterious(0) probably_damaging(0.959) TCGA-VQ-A91D-01 1 43905341 43905341 C - SZT2 Frame_Shift_Del p.S2260Pfs*17 0.23 TCGA-VQ-A91D-01 1 44056858 44056858 G A PTPRF Missense_Mutation p.V389M 0.40 deleterious(0) probably_damaging(0.977) TCGA-VQ-A91D-01 1 44468606 44468606 C T SLC6A9 Silent p.R287R 0.36 TCGA-VQ-A91D-01 1 44684858 44684858 C T DMAP1 Missense_Mutation p.T284M 0.25 tolerated(0.1) possibly_damaging(0.738) TCGA-VQ-A91D-01 1 45125897 45125897 A G TMEM53 Silent p.G44G 0.22 TCGA-VQ-A91D-01 1 46073055 46073055 A - NASP Frame_Shift_Del p.T160Qfs*29 0.20 TCGA-VQ-A91D-01 1 46656568 46656568 G T POMGNT1 Intron 0.60 TCGA-VQ-A91D-01 1 46659217 46659217 C - POMGNT1 Intron 0.29 TCGA-VQ-A91D-01 1 46871370 46871370 C - FAAH Frame_Shift_Del p.L232Wfs*3 0.27 TCGA-VQ-A91D-01 1 47351221 47351221 C T CYP4Z2P RNA 0.28 TCGA-VQ-A91D-01 1 47685461 47685461 C T TAL1 Silent p.A309A 0.27 TCGA-VQ-A91D-01 1 52246907 52246907 C T OSBPL9 Missense_Mutation p.A453V 0.23 deleterious(0) possibly_damaging(0.903) TCGA-VQ-A91D-01 1 52824770 52824770 G A CC2D1B Missense_Mutation p.R396C 0.29 deleterious(0.01) benign(0.006) TCGA-VQ-A91D-01 1 52896884 52896884 C T ZCCHC11 Silent p.P1504P 0.21 TCGA-VQ-A91D-01 1 53728129 53728129 C T LRP8 Missense_Mutation p.G588E 0.39 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 1 54417793 54417793 C T LRRC42 Missense_Mutation p.P41S 0.31 tolerated(0.17) benign(0.045) TCGA-VQ-A91D-01 1 54605468 54605468 G A CDCP2 Missense_Mutation p.R359C 0.24 deleterious(0) probably_damaging(0.993) TCGA-VQ-A91D-01 1 59004856 59004856 G A OMA1 Silent p.G37G 0.33 TCGA-VQ-A91D-01 1 5964781 5964781 G A NPHP4 Missense_Mutation p.T680M 0.22 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91D-01 1 6196810 6196810 C T CHD5 Missense_Mutation p.R851H 0.28 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 1 62456007 62456007 C T INADL Nonsense_Mutation p.R1280* 0.47 TCGA-VQ-A91D-01 1 63084481 63084481 C T DOCK7 Silent p.P526P 0.26 TCGA-VQ-A91D-01 1 63876950 63876950 T - ALG6 Frame_Shift_Del p.C212Afs*20 0.21 TCGA-VQ-A91D-01 1 64605954 64605954 T A ROR1 Missense_Mutation p.V258D 0.39 tolerated(1) benign(0.002) TCGA-VQ-A91D-01 1 65095088 65095088 A G CACHD1 Missense_Mutation p.S139G 0.38 deleterious(0.02) possibly_damaging(0.828) TCGA-VQ-A91D-01 1 65325832 65325833 - G JAK1 Frame_Shift_Ins p.L431Vfs*22 0.23 TCGA-VQ-A91D-01 1 6681733 6681733 G A PHF13 3'UTR 0.38 TCGA-VQ-A91D-01 1 70573438 70573438 A G LRRC7 Missense_Mutation p.I1479V 0.37 deleterious(0.01) probably_damaging(0.926) TCGA-VQ-A91D-01 1 70614343 70614343 T A LRRC40 Silent p.L510L 0.50 TCGA-VQ-A91D-01 1 70705186 70705186 C A SRSF11 Silent p.P261P 0.37 TCGA-VQ-A91D-01 1 75039098 75039098 T - C1orf173 Frame_Shift_Del p.T766Rfs*23 0.28 TCGA-VQ-A91D-01 1 75199055 75199055 T - TYW3 Frame_Shift_Del p.F44Sfs*17 0.22 TCGA-VQ-A91D-01 1 75204462 75204462 C T TYW3 Missense_Mutation p.A115V 0.18 deleterious(0) probably_damaging(0.982) TCGA-VQ-A91D-01 1 78279447 78279447 T C FAM73A Silent p.R222R 0.31 TCGA-VQ-A91D-01 1 7848254 7848254 C T PER3 Silent p.Y180Y 0.34 TCGA-VQ-A91D-01 1 79120812 79120812 T C IFI44 Missense_Mutation p.F203S 0.13 deleterious(0.02) benign(0.076) TCGA-VQ-A91D-01 1 8424147 8424147 T C RERE Missense_Mutation p.H570R 0.21 probably_damaging(0.986) TCGA-VQ-A91D-01 1 84369762 84369762 T - TTLL7 Frame_Shift_Del p.V737Ffs*4 0.26 TCGA-VQ-A91D-01 1 85551632 85551632 A C WDR63 Missense_Mutation p.N220T 0.18 tolerated(1) benign(0.007) TCGA-VQ-A91D-01 1 85648160 85648160 C T SYDE2 Missense_Mutation p.R722Q 0.25 deleterious(0.04) probably_damaging(0.935) TCGA-VQ-A91D-01 1 85648872 85648872 G A SYDE2 Silent p.L485L 0.37 TCGA-VQ-A91D-01 1 85787125 85787125 A T DDAH1 3'UTR 0.31 TCGA-VQ-A91D-01 1 86591886 86591886 G A COL24A1 Missense_Mutation p.L45F 0.28 deleterious(0.02) probably_damaging(0.998) TCGA-VQ-A91D-01 1 881874 881874 G A NOC2L Nonsense_Mutation p.Q571* 0.29 TCGA-VQ-A91D-01 1 89479106 89479106 G A GBP3 Silent p.T210T 0.26 TCGA-VQ-A91D-01 1 89662871 89662871 C T GBP4 Missense_Mutation p.V53M 0.44 deleterious(0.04) possibly_damaging(0.852) TCGA-VQ-A91D-01 1 89726358 89726358 A - GBP5 3'UTR 0.32 TCGA-VQ-A91D-01 1 89732048 89732048 G A GBP5 Silent p.G283G 0.26 TCGA-VQ-A91D-01 1 90049043 90049043 T - LRRC8B Frame_Shift_Del p.L280* 0.25 TCGA-VQ-A91D-01 1 92789302 92789302 C T RPAP2 Silent p.G275G 0.34 TCGA-VQ-A91D-01 1 93302852 93302852 T C RPL5 Intron 0.17 TCGA-VQ-A91D-01 1 94467446 94467446 C T ABCA4 Missense_Mutation p.A2084T 0.42 deleterious(0) probably_damaging(0.994) TCGA-VQ-A91D-01 1 94496584 94496584 G T ABCA4 Silent p.P1407P 0.44 TCGA-VQ-A91D-01 1 957664 957664 C T AGRN Silent p.S95S 0.26 TCGA-VQ-A91D-01 1 9777114 9777114 C - PIK3CD Frame_Shift_Del p.Q295Rfs*39 0.32 TCGA-VQ-A91D-01 1 979047 979047 G C AGRN Missense_Mutation p.C578S 0.06 deleterious(0.01) benign(0.415) TCGA-VQ-A91D-01 1 9932114 9932114 G A CTNNBIP1 Silent p.R3R 0.39 TCGA-VQ-A91D-01 1 99767303 99767303 G A LPPR4 Silent p.T272T 0.15 TCGA-VQ-A91D-01 20 1276981 1276981 C T SNPH 5'UTR 0.44 TCGA-VQ-A91D-01 20 13140675 13140675 A - SPTLC3 Frame_Shift_Del p.I483Lfs*31 0.27 TCGA-VQ-A91D-01 20 13260475 13260475 C - ISM1 Frame_Shift_Del p.R194Gfs*82 0.29 TCGA-VQ-A91D-01 20 13714388 13714388 T - ESF1 Frame_Shift_Del p.R644Dfs*2 0.27 TCGA-VQ-A91D-01 20 1433140 1433140 G A NSFL1C Silent p.G263G 0.31 TCGA-VQ-A91D-01 20 1616920 1616920 C T SIRPG Missense_Mutation p.R221H 0.10 tolerated(1) benign(0.006) TCGA-VQ-A91D-01 20 18296033 18296033 G A ZNF133 Missense_Mutation p.G179S 0.41 tolerated(0.08) benign(0.439) TCGA-VQ-A91D-01 20 18296563 18296563 C T ZNF133 Silent p.C355C 0.22 TCGA-VQ-A91D-01 20 18297076 18297076 C T ZNF133 Silent p.C526C 0.38 TCGA-VQ-A91D-01 20 21687523 21687523 C T PAX1 Missense_Mutation p.T245M 0.29 deleterious(0.04) possibly_damaging(0.513) TCGA-VQ-A91D-01 20 23350337 23350337 C T GZF1 Missense_Mutation p.R582W 0.15 deleterious(0) probably_damaging(0.997) TCGA-VQ-A91D-01 20 23860099 23860099 A G CST5 Missense_Mutation p.M72T 0.06 deleterious(0.01) benign(0.018) TCGA-VQ-A91D-01 20 24949598 24949598 C T APMAP Missense_Mutation p.R324H 0.33 deleterious(0) probably_damaging(0.996) TCGA-VQ-A91D-01 20 259941 259941 G A C20orf96 Nonsense_Mutation p.R113* 0.34 TCGA-VQ-A91D-01 20 2637112 2637112 G A NOP56 Missense_Mutation p.R359Q 0.41 deleterious(0) possibly_damaging(0.752) TCGA-VQ-A91D-01 20 2774720 2774720 T C CPXM1 3'UTR 0.42 TCGA-VQ-A91D-01 20 30522536 30522536 G A TTLL9 Silent p.A283A 0.39 TCGA-VQ-A91D-01 20 30617614 30617614 G A CCM2L 3'UTR 0.31 TCGA-VQ-A91D-01 20 31024426 31024426 T - ASXL1 Frame_Shift_Del p.F1305Lfs*145 0.23 TCGA-VQ-A91D-01 20 3128001 3128001 C - FASTKD5 Frame_Shift_Del p.Q574Sfs*7 0.26 TCGA-VQ-A91D-01 20 31761980 31761980 T A BPIFA2 Missense_Mutation p.V133D 0.06 deleterious(0) probably_damaging(0.995) TCGA-VQ-A91D-01 20 3180702 3180702 C T DDRGK1 Missense_Mutation p.R152H 0.38 tolerated(0.06) probably_damaging(0.998) TCGA-VQ-A91D-01 20 31975255 31975255 T A CDK5RAP1 Missense_Mutation p.D210V 0.31 deleterious(0) probably_damaging(0.948) TCGA-VQ-A91D-01 20 3211402 3211402 C T SLC4A11 Missense_Mutation p.A463T 0.12 deleterious(0.04) possibly_damaging(0.538) TCGA-VQ-A91D-01 20 32161860 32161860 G A CBFA2T2 5'UTR 0.27 TCGA-VQ-A91D-01 20 33855098 33855098 G A MMP24 Missense_Mutation p.R357H 0.40 tolerated(0.14) probably_damaging(0.991) TCGA-VQ-A91D-01 20 34526962 34526962 C T PHF20 Missense_Mutation p.R882C 0.29 deleterious(0) possibly_damaging(0.726) TCGA-VQ-A91D-01 20 34797635 34797635 G A EPB41L1 Missense_Mutation p.A632T 0.37 tolerated(0.09) possibly_damaging(0.496) TCGA-VQ-A91D-01 20 35125403 35125403 G A DLGAP4 Silent p.T648T 0.33 TCGA-VQ-A91D-01 20 35262937 35262937 G A SLA2 Silent p.A49A 0.24 TCGA-VQ-A91D-01 20 35444309 35444309 C T SOGA1 Silent p.L512L 0.41 TCGA-VQ-A91D-01 20 36627612 36627613 - GG TTI1 Frame_Shift_Ins p.L924Pfs*38 0.21 TCGA-VQ-A91D-01 20 36640039 36640039 T A TTI1 Missense_Mutation p.D727V 0.30 deleterious(0) probably_damaging(0.981) TCGA-VQ-A91D-01 20 36992686 36992686 G A LBP Missense_Mutation p.R237Q 0.31 tolerated(1) benign(0.004) TCGA-VQ-A91D-01 20 37053974 37053974 A G SNORA71B RNA 0.39 TCGA-VQ-A91D-01 20 37353257 37353257 G A SLC32A1 5'UTR 0.38 TCGA-VQ-A91D-01 20 39317556 39317556 G A MAFB 5'UTR 0.63 TCGA-VQ-A91D-01 20 39831192 39831192 G A ZHX3 Missense_Mutation p.P789S 0.29 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 20 39989950 39989950 C A EMILIN3 Missense_Mutation p.Q753H 0.11 deleterious(0.02) benign(0.406) TCGA-VQ-A91D-01 20 39991110 39991110 A G EMILIN3 Missense_Mutation p.S367P 0.27 deleterious(0.02) possibly_damaging(0.779) TCGA-VQ-A91D-01 20 39991230 39991230 G - EMILIN3 Frame_Shift_Del p.Q327Rfs*50 0.18 TCGA-VQ-A91D-01 20 40044190 40044190 C T CHD6 Missense_Mutation p.R2192Q 0.28 tolerated(0.17) possibly_damaging(0.623) TCGA-VQ-A91D-01 20 41419951 41419951 C T PTPRT Missense_Mutation p.V124M 0.25 deleterious(0) possibly_damaging(0.844) TCGA-VQ-A91D-01 20 42315629 42315629 C T MYBL2 Silent p.T139T 0.23 TCGA-VQ-A91D-01 20 42806604 42806604 A G JPH2 Intron 0.42 TCGA-VQ-A91D-01 20 43378898 43378898 C T KCNK15 Missense_Mutation p.R138C 0.36 tolerated(0.24) benign(0.004) TCGA-VQ-A91D-01 20 43837304 43837304 G A SEMG1 Missense_Mutation p.D456N 0.31 tolerated_low_confidence(0.35) benign(0.003) TCGA-VQ-A91D-01 20 43964556 43964556 C T SDC4 Missense_Mutation p.R22Q 0.20 deleterious(0.01) probably_damaging(0.977) TCGA-VQ-A91D-01 20 44003989 44003989 T G TP53TG5 Missense_Mutation p.K153T 0.31 tolerated(0.09) benign(0.015) TCGA-VQ-A91D-01 20 44586496 44586496 G A ZNF335 Silent p.G775G 0.29 TCGA-VQ-A91D-01 20 44640341 44640341 G A MMP9 Missense_Mutation p.A318T 0.34 tolerated(0.13) benign(0.018) TCGA-VQ-A91D-01 20 45353755 45353755 C T SLC2A10 Missense_Mutation p.A27V 0.34 deleterious(0.01) probably_damaging(0.97) TCGA-VQ-A91D-01 20 45354534 45354534 G A SLC2A10 Missense_Mutation p.A287T 0.26 deleterious(0) probably_damaging(0.982) TCGA-VQ-A91D-01 20 46282202 46282202 A T NCOA3 3'UTR 0.05 TCGA-VQ-A91D-01 20 4679983 4679983 G A PRNP Silent p.P39P 0.39 TCGA-VQ-A91D-01 20 4680488 4680488 C T PRNP Missense_Mutation p.R208C 0.24 deleterious(0) probably_damaging(0.961) TCGA-VQ-A91D-01 20 47587722 47587722 G A ARFGEF2 Missense_Mutation p.G419D 0.36 deleterious(0.01) probably_damaging(0.993) TCGA-VQ-A91D-01 20 47855587 47855587 G A DDX27 Missense_Mutation p.A628T 0.33 tolerated(0.55) possibly_damaging(0.576) TCGA-VQ-A91D-01 20 4854728 4854728 G A SLC23A2 Missense_Mutation p.A319V 0.24 deleterious(0) possibly_damaging(0.724) TCGA-VQ-A91D-01 20 49366368 49366368 G A PARD6B Silent p.T154T 0.31 TCGA-VQ-A91D-01 20 49493036 49493036 C T BCAS4 Silent p.T200T 0.27 TCGA-VQ-A91D-01 20 49520470 49520470 T - ADNP Frame_Shift_Del p.I22Yfs*14 0.39 TCGA-VQ-A91D-01 20 49576517 49576517 C T MOCS3 Missense_Mutation p.R380C 0.05 deleterious(0.02) benign(0.033) TCGA-VQ-A91D-01 20 50139828 50139828 T A NFATC2 Missense_Mutation p.I318F 0.31 deleterious(0) benign(0.424) TCGA-VQ-A91D-01 20 50769184 50769184 G C ZFP64 Missense_Mutation p.A516G 0.24 tolerated(0.32) benign(0.397) TCGA-VQ-A91D-01 20 51871914 51871914 A G TSHZ2 Silent p.T639T 0.29 TCGA-VQ-A91D-01 20 52193728 52193728 T - ZNF217 Frame_Shift_Del p.K525Nfs*23 0.25 TCGA-VQ-A91D-01 20 54824100 54824100 C T MC3R Silent p.G67G 0.17 TCGA-VQ-A91D-01 20 54824343 54824343 C T MC3R Silent p.Y148Y 0.42 TCGA-VQ-A91D-01 20 56140815 56140816 - GA PCK1 Frame_Shift_Ins p.I612Rfs*5 0.29 TCGA-VQ-A91D-01 20 57016011 57016011 G A VAPB Missense_Mutation p.E149K 0.28 tolerated(0.35) possibly_damaging(0.51) TCGA-VQ-A91D-01 20 57599479 57599479 G A TUBB1 Missense_Mutation p.V333M 0.30 tolerated_low_confidence(0.1) benign(0.072) TCGA-VQ-A91D-01 20 57767782 57767782 C A ZNF831 Missense_Mutation p.L570M 0.38 deleterious(0.03) benign(0.284) TCGA-VQ-A91D-01 20 57767832 57767832 C T ZNF831 Silent p.D586D 0.21 TCGA-VQ-A91D-01 20 58514325 58514325 G A PPP1R3D Missense_Mutation p.A221V 0.25 deleterious(0) probably_damaging(0.99) TCGA-VQ-A91D-01 20 6021826 6021826 C T LRRN4 Missense_Mutation p.A689T 0.56 tolerated(0.32) benign(0.029) TCGA-VQ-A91D-01 20 60585102 60585102 C T TAF4 Silent p.T587T 0.31 TCGA-VQ-A91D-01 20 60701461 60701461 G A LSM14B Silent p.L131L 0.35 TCGA-VQ-A91D-01 20 60713313 60713313 G A PSMA7 Missense_Mutation p.R169C 0.20 deleterious(0) probably_damaging(0.978) TCGA-VQ-A91D-01 20 60968648 60968648 G A CABLES2 Missense_Mutation p.A243V 0.22 deleterious(0) probably_damaging(0.95) TCGA-VQ-A91D-01 20 61637760 61637760 C T BHLHE23 Missense_Mutation p.A107T 0.58 tolerated(0.06) benign(0.183) TCGA-VQ-A91D-01 20 61919039 61919039 C T ARFGAP1 Silent p.S353S 0.28 TCGA-VQ-A91D-01 20 61981873 61981873 G A CHRNA4 Missense_Mutation p.P297L 0.26 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 20 62187885 62187885 C T C20orf195 Missense_Mutation p.T290M 0.34 tolerated(0.11) benign(0.434) TCGA-VQ-A91D-01 20 62200824 62200824 G A HELZ2 Silent p.F255F 0.42 TCGA-VQ-A91D-01 20 62331907 62331907 G - ARFRP1 Intron 0.25 TCGA-VQ-A91D-01 20 62364630 62364630 T C ZGPAT Missense_Mutation p.L215P 0.26 deleterious(0) probably_damaging(0.993) TCGA-VQ-A91D-01 20 62614535 62614535 C T PRPF6 Silent p.D69D 0.26 TCGA-VQ-A91D-01 20 62664278 62664278 G A PRPF6 Missense_Mutation p.A920T 0.27 tolerated(0.36) benign(0) TCGA-VQ-A91D-01 20 62904744 62904744 T C PCMTD2 Silent p.L293L 0.38 TCGA-VQ-A91D-01 20 9343599 9343599 T G PLCB4 Missense_Mutation p.S142R 0.25 deleterious(0.01) possibly_damaging(0.502) TCGA-VQ-A91D-01 20 9561212 9561212 G A PAK7 Silent p.S190S 0.37 TCGA-VQ-A91D-01 21 11039319 11039319 C T BAGE2 RNA 0.06 TCGA-VQ-A91D-01 21 16337036 16337036 T G NRIP1 3'UTR 0.32 TCGA-VQ-A91D-01 21 16338967 16338967 T - NRIP1 Frame_Shift_Del p.N516Tfs*11 0.28 TCGA-VQ-A91D-01 21 17443630 17443630 C T LINC00478 RNA 0.10 TCGA-VQ-A91D-01 21 27097547 27097547 G A ATP5J Silent p.F101F 0.26 TCGA-VQ-A91D-01 21 28216622 28216622 C T ADAMTS1 Missense_Mutation p.E218K 0.30 tolerated(0.79) benign(0.011) TCGA-VQ-A91D-01 21 28338092 28338092 C T ADAMTS5 Missense_Mutation p.A207T 0.36 tolerated(0.49) benign(0.002) TCGA-VQ-A91D-01 21 28338461 28338461 C T ADAMTS5 Missense_Mutation p.G84S 0.36 tolerated(0.12) probably_damaging(1) TCGA-VQ-A91D-01 21 28338502 28338502 C T ADAMTS5 Missense_Mutation p.S70N 0.18 tolerated(0.16) benign(0.152) TCGA-VQ-A91D-01 21 30302760 30302761 - A LTN1 3'UTR 0.26 TCGA-VQ-A91D-01 21 30411433 30411433 G - USP16 Frame_Shift_Del p.V275Lfs*2 0.21 TCGA-VQ-A91D-01 21 30963445 30963445 A G GRIK1 Missense_Mutation p.V451A 0.35 deleterious(0) benign(0.006) TCGA-VQ-A91D-01 21 31311789 31311789 G A GRIK1 Silent p.P10P 0.59 TCGA-VQ-A91D-01 21 31933562 31933562 C G KRTAP19-7 Missense_Mutation p.G16A 0.30 deleterious_low_confidence(0) unknown(0) TCGA-VQ-A91D-01 21 32575261 32575261 A C TIAM1 Missense_Mutation p.L819R 0.27 tolerated(0.16) benign(0.005) TCGA-VQ-A91D-01 21 33044284 33044284 G A SCAF4 Nonsense_Mutation p.Q958* 0.12 TCGA-VQ-A91D-01 21 33678965 33678965 G A MRAP Missense_Mutation p.A41T 0.35 tolerated(0.13) possibly_damaging(0.689) TCGA-VQ-A91D-01 21 33825668 33825668 G T EVA1C Missense_Mutation p.G70V 0.32 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 21 34635229 34635229 C T IFNAR2 Silent p.S324S 0.29 TCGA-VQ-A91D-01 21 34948118 34948118 T C SON Silent p.C2380C 0.24 TCGA-VQ-A91D-01 21 35255940 35255940 C T ITSN1 Silent p.R1547R 0.34 TCGA-VQ-A91D-01 21 35893870 35893870 T C RCAN1 Silent p.G171G 0.30 TCGA-VQ-A91D-01 21 37412917 37412917 C A SETD4 Missense_Mutation p.R340S 0.22 tolerated(0.06) possibly_damaging(0.588) TCGA-VQ-A91D-01 21 37581181 37581181 G - DOPEY2 Frame_Shift_Del p.T222Pfs*7 0.21 TCGA-VQ-A91D-01 21 37618869 37618869 G A DOPEY2 Missense_Mutation p.G1531R 0.34 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 21 37661403 37661403 G - DOPEY2 Frame_Shift_Del p.E2140Rfs*53 0.29 TCGA-VQ-A91D-01 21 38600525 38600525 G A DSCR3 Silent p.C219C 0.31 TCGA-VQ-A91D-01 21 40558989 40558989 A - BRWD1 Frame_Shift_Del p.L2309* 0.27 TCGA-VQ-A91D-01 21 40568106 40568106 A - BRWD1 Intron 0.30 TCGA-VQ-A91D-01 21 40570895 40570896 - T BRWD1 Frame_Shift_Ins p.T1816Nfs*6 0.34 TCGA-VQ-A91D-01 21 40847060 40847060 G A SH3BGR Splice_Site p.X141_splice 0.32 TCGA-VQ-A91D-01 21 43166883 43166883 C T RIPK4 Missense_Mutation p.R241H 0.49 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91D-01 21 43704721 43704721 C T ABCG1 Silent p.L262L 0.45 TCGA-VQ-A91D-01 21 43802211 43802211 G A TMPRSS3 Silent p.I305I 0.35 TCGA-VQ-A91D-01 21 44293795 44293795 G A WDR4 Silent p.D54D 0.37 TCGA-VQ-A91D-01 21 45507655 45507655 C T TRAPPC10 Missense_Mutation p.A872V 0.31 tolerated(0.11) possibly_damaging(0.509) TCGA-VQ-A91D-01 21 45681135 45681135 G A DNMT3L Missense_Mutation p.A3V 0.28 tolerated_low_confidence(0.12) benign(0.002) TCGA-VQ-A91D-01 21 46702374 46702374 T A POFUT2 Missense_Mutation p.R176S 0.30 tolerated(0.09) benign(0.289) TCGA-VQ-A91D-01 21 46900646 46900646 C T COL18A1 Silent p.P675P 0.26 TCGA-VQ-A91D-01 21 47536710 47536710 C T COL6A2 Silent p.N327N 0.38 TCGA-VQ-A91D-01 21 47552249 47552249 C T COL6A2 Missense_Mutation p.T948M 0.32 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 21 47557213 47557213 G A FTCD Silent p.G493G 0.38 TCGA-VQ-A91D-01 21 47703569 47703569 C A MCM3AP Missense_Mutation p.R468M 0.32 deleterious(0) probably_damaging(0.98) TCGA-VQ-A91D-01 21 47836236 47836236 C T PCNT Missense_Mutation p.T2135M 0.34 benign(0.184) TCGA-VQ-A91D-01 22 17601028 17601028 C T CECR6 Silent p.V330V 0.06 TCGA-VQ-A91D-01 22 18022654 18022654 C T CECR2 Missense_Mutation p.P920L 0.46 deleterious_low_confidence(0.01) benign(0.05) TCGA-VQ-A91D-01 22 18300403 18300403 G A MICAL3 Missense_Mutation p.P1675L 0.25 possibly_damaging(0.685) TCGA-VQ-A91D-01 22 18300932 18300932 G - MICAL3 Frame_Shift_Del p.R1499Gfs*106 0.32 TCGA-VQ-A91D-01 22 19959459 19959459 G A ARVCF Missense_Mutation p.P911S 0.46 tolerated_low_confidence(0.76) benign(0.005) TCGA-VQ-A91D-01 22 19969177 19969177 G A ARVCF Silent p.G151G 0.08 TCGA-VQ-A91D-01 22 20052217 20052217 G - TANGO2 3'UTR 0.18 TCGA-VQ-A91D-01 22 20130522 20130522 C - ZDHHC8 Frame_Shift_Del p.T459Rfs*177 0.34 TCGA-VQ-A91D-01 22 20819359 20819359 C T KLHL22 Missense_Mutation p.V300I 0.25 tolerated(0.37) benign(0.053) TCGA-VQ-A91D-01 22 21081627 21081627 C T PI4KA Missense_Mutation p.C1611Y 0.39 tolerated(0.07) benign(0.055) TCGA-VQ-A91D-01 22 21098924 21098924 C T PI4KA Missense_Mutation p.A1150T 0.37 tolerated(0.29) benign(0.01) TCGA-VQ-A91D-01 22 21224635 21224635 G A SNAP29 Missense_Mutation p.R83H 0.22 tolerated(0.12) benign(0.282) TCGA-VQ-A91D-01 22 21975892 21975893 - A UBE2L3 Frame_Shift_Ins p.F194Ifs*3 0.27 TCGA-VQ-A91D-01 22 22319671 22319671 G A TOP3B Missense_Mutation p.A310V 0.44 deleterious(0) probably_damaging(0.974) TCGA-VQ-A91D-01 22 22319678 22319678 G A TOP3B Missense_Mutation p.R308C 0.46 deleterious(0) probably_damaging(0.991) TCGA-VQ-A91D-01 22 22677116 22677116 T G IGLV1-51 Missense_Mutation p.I48M 0.34 deleterious(0.01) possibly_damaging(0.784) TCGA-VQ-A91D-01 22 24002101 24002101 G A GUSBP11 RNA 0.25 TCGA-VQ-A91D-01 22 24086438 24086438 C T ZNF70 Missense_Mutation p.R297Q 0.33 tolerated(1) probably_damaging(0.996) TCGA-VQ-A91D-01 22 24481040 24481040 A - CABIN1 Frame_Shift_Del p.N1068Tfs*40 0.21 TCGA-VQ-A91D-01 22 24717354 24717354 A - SPECC1L Frame_Shift_Del p.K137Nfs*30 0.22 TCGA-VQ-A91D-01 22 24967916 24967916 C T SNRPD3 Missense_Mutation p.R118C 0.27 tolerated(0.11) benign(0.265) TCGA-VQ-A91D-01 22 26164468 26164468 C A MYO18B Silent p.T195T 0.24 TCGA-VQ-A91D-01 22 26829563 26829563 C - ASPHD2 5'UTR 0.50 TCGA-VQ-A91D-01 22 28195185 28195185 G - MN1 Frame_Shift_Del p.Y450Tfs*2 0.30 TCGA-VQ-A91D-01 22 28195346 28195346 C T MN1 Missense_Mutation p.G396R 0.53 probably_damaging(0.958) TCGA-VQ-A91D-01 22 29153069 29153069 A G HSCB Missense_Mutation p.D207G 0.31 deleterious(0.01) possibly_damaging(0.505) TCGA-VQ-A91D-01 22 29449692 29449692 A T ZNRF3 3'UTR 0.20 TCGA-VQ-A91D-01 22 29709579 29709579 G A RASL10A Intron 0.28 TCGA-VQ-A91D-01 22 29747722 29747722 C T AP1B1 Missense_Mutation p.R344H 0.23 deleterious(0.01) benign(0.235) TCGA-VQ-A91D-01 22 29834643 29834643 G A RFPL1 5'UTR 0.33 TCGA-VQ-A91D-01 22 30185012 30185012 A T ASCC2 Missense_Mutation p.I755N 0.25 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91D-01 22 30659909 30659909 C T OSM Missense_Mutation p.G241D 0.33 tolerated(0.43) benign(0.016) TCGA-VQ-A91D-01 22 31322775 31322776 CT - MORC2 3'UTR 0.18 TCGA-VQ-A91D-01 22 32239183 32239183 C T DEPDC5 Missense_Mutation p.T864M 0.09 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91D-01 22 35659108 35659108 A G HMGXB4 Silent p.G23G 0.47 TCGA-VQ-A91D-01 22 35660883 35660883 A G HMGXB4 Missense_Mutation p.K168E 0.36 deleterious_low_confidence(0) possibly_damaging(0.612) TCGA-VQ-A91D-01 22 35804518 35804518 C T MCM5 Silent p.H238H 0.28 TCGA-VQ-A91D-01 22 36897353 36897353 G A FOXRED2 Missense_Mutation p.T384I 0.26 deleterious(0.02) benign(0.399) TCGA-VQ-A91D-01 22 37602846 37602846 G A SSTR3 Missense_Mutation p.R333C 0.25 deleterious(0.02) probably_damaging(0.98) TCGA-VQ-A91D-01 22 37708091 37708091 C T CYTH4 Nonsense_Mutation p.R330* 0.40 TCGA-VQ-A91D-01 22 37966379 37966379 A T LGALS2 Missense_Mutation p.L97Q 0.13 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 22 38046565 38046565 G A SH3BP1 Silent p.V477V 0.34 TCGA-VQ-A91D-01 22 38120849 38120849 C A TRIOBP Silent p.T762T 0.24 TCGA-VQ-A91D-01 22 38130773 38130773 G - TRIOBP Frame_Shift_Del p.G1479Afs*28 0.10 TCGA-VQ-A91D-01 22 38245433 38245433 G A EIF3L 5'UTR 0.38 TCGA-VQ-A91D-01 22 38282787 38282787 G A EIF3L Missense_Mutation p.A531T 0.32 tolerated(0.06) probably_damaging(0.918) TCGA-VQ-A91D-01 22 38369955 38369955 G A SOX10 Silent p.A316A 0.40 TCGA-VQ-A91D-01 22 38823524 38823524 C T KCNJ4 Missense_Mutation p.R205H 0.32 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 22 38882072 38882072 C T DDX17 Silent p.G688G 0.47 TCGA-VQ-A91D-01 22 39387625 39387625 T C APOBEC3B Missense_Mutation p.Y338H 0.16 tolerated(0.06) probably_damaging(0.998) TCGA-VQ-A91D-01 22 39621767 39621767 C T PDGFB Silent p.T229T 0.54 TCGA-VQ-A91D-01 22 39884066 39884066 C T MGAT3 Silent p.C238C 0.45 TCGA-VQ-A91D-01 22 40015373 40015373 C T CACNA1I Missense_Mutation p.R181C 0.25 deleterious(0) probably_damaging(0.997) TCGA-VQ-A91D-01 22 40817001 40817001 G - MKL1 Frame_Shift_Del p.P244Rfs*93 0.29 TCGA-VQ-A91D-01 22 41257115 41257115 T - DNAJB7 Frame_Shift_Del p.K295Rfs*25 0.31 TCGA-VQ-A91D-01 22 41277885 41277885 T C XPNPEP3 Missense_Mutation p.V98A 0.36 deleterious(0) benign(0.394) TCGA-VQ-A91D-01 22 41565524 41565524 A G EP300 Missense_Mutation p.Y1397C 0.48 probably_damaging(1) TCGA-VQ-A91D-01 22 41657477 41657477 G A RANGAP1 Silent p.G196G 0.42 TCGA-VQ-A91D-01 22 41923246 41923246 C T POLR3H 3'UTR 0.32 TCGA-VQ-A91D-01 22 42141894 42141894 C G MEI1 Missense_Mutation p.A515G 0.33 deleterious(0) probably_damaging(0.972) TCGA-VQ-A91D-01 22 42422841 42422841 T C WBP2NL Missense_Mutation p.Y196H 0.31 deleterious(0) possibly_damaging(0.685) TCGA-VQ-A91D-01 22 42524871 42524871 C T CYP2D6 Missense_Mutation p.R194H 0.21 deleterious(0.01) possibly_damaging(0.696) TCGA-VQ-A91D-01 22 42539423 42539423 G A NDUFA6-AS1 3'Flank 0.28 TCGA-VQ-A91D-01 22 42564701 42564701 G A TCF20 Silent p.T1947T 0.26 TCGA-VQ-A91D-01 22 42968451 42968451 C T SERHL2 Silent p.H247H 0.36 TCGA-VQ-A91D-01 22 43193538 43193538 T C ARFGAP3 3'UTR 0.42 TCGA-VQ-A91D-01 22 43213780 43213780 T - ARFGAP3 Frame_Shift_Del p.N299Mfs*22 0.39 TCGA-VQ-A91D-01 22 43529486 43529486 G A MCAT Missense_Mutation p.R246W 0.56 deleterious(0) possibly_damaging(0.668) TCGA-VQ-A91D-01 22 43627825 43627825 C T SCUBE1 Missense_Mutation p.V301M 0.38 deleterious(0.04) probably_damaging(0.998) TCGA-VQ-A91D-01 22 43901420 43901420 C T MPPED1 Missense_Mutation p.A302V 0.35 deleterious(0) possibly_damaging(0.588) TCGA-VQ-A91D-01 22 44258212 44258212 G A SULT4A1 Silent p.S17S 0.17 TCGA-VQ-A91D-01 22 44285732 44285732 T C PNPLA5 Missense_Mutation p.T147A 0.32 tolerated(0.15) benign(0.442) TCGA-VQ-A91D-01 22 44368124 44368124 G A SAMM50 Missense_Mutation p.A111T 0.30 deleterious(0) possibly_damaging(0.892) TCGA-VQ-A91D-01 22 44692569 44692569 G T KIAA1644 Silent p.S88S 0.24 TCGA-VQ-A91D-01 22 45765885 45765885 C T SMC1B Missense_Mutation p.R790H 0.29 deleterious(0.01) benign(0.404) TCGA-VQ-A91D-01 22 45946416 45946416 G A FBLN1 Missense_Mutation p.E540K 0.15 deleterious(0.01) probably_damaging(0.974) TCGA-VQ-A91D-01 22 46318964 46318964 C T WNT7B Silent p.S274S 0.42 TCGA-VQ-A91D-01 22 46327148 46327148 C T WNT7B Missense_Mutation p.D134N 0.55 deleterious(0.01) probably_damaging(0.969) TCGA-VQ-A91D-01 22 46932163 46932163 G A CELSR1 Missense_Mutation p.T302M 0.42 deleterious(0) probably_damaging(0.997) TCGA-VQ-A91D-01 22 46932424 46932424 G A CELSR1 Missense_Mutation p.S215L 0.50 tolerated_low_confidence(0.32) benign(0) TCGA-VQ-A91D-01 22 49042483 49042483 C T FAM19A5 Missense_Mutation p.R63W 0.26 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 22 50280304 50280304 C T ZBED4 Silent p.H998H 0.36 TCGA-VQ-A91D-01 22 50319165 50319165 C T CRELD2 Silent p.F372F 0.10 TCGA-VQ-A91D-01 22 50436638 50436638 G A IL17REL Silent p.S234S 0.37 TCGA-VQ-A91D-01 22 50589272 50589272 G A MOV10L1 Missense_Mutation p.A946T 0.32 deleterious(0.01) benign(0.329) TCGA-VQ-A91D-01 22 50632027 50632027 C T TRABD Missense_Mutation p.P19L 0.37 tolerated_low_confidence(0.06) benign(0.001) TCGA-VQ-A91D-01 22 50636345 50636345 C T TRABD Silent p.I255I 0.05 TCGA-VQ-A91D-01 22 50649302 50649302 C T SELO Missense_Mutation p.A438V 0.34 tolerated(0.29) benign(0.026) TCGA-VQ-A91D-01 22 50659600 50659600 A G TUBGCP6 Missense_Mutation p.V1063A 0.23 deleterious(0.02) benign(0.438) TCGA-VQ-A91D-01 22 50728035 50728035 G A PLXNB2 Missense_Mutation p.R327C 0.38 deleterious(0.01) probably_damaging(1) TCGA-VQ-A91D-01 22 50898584 50898584 C T SBF1 Silent p.S1096S 0.36 TCGA-VQ-A91D-01 22 50988177 50988177 G A KLHDC7B Missense_Mutation p.A528T 0.50 tolerated(0.5) benign(0.001) TCGA-VQ-A91D-01 22 51016304 51016304 A - CPT1B Frame_Shift_Del p.V14Gfs*15 0.27 TCGA-VQ-A91D-01 2 100007042 100007042 T C EIF5B Silent p.D874D 0.38 TCGA-VQ-A91D-01 2 10059787 10059788 - A TAF1B Frame_Shift_Ins p.S471Kfs*11 0.31 TCGA-VQ-A91D-01 2 101580607 101580607 C G NPAS2 Missense_Mutation p.T229S 0.24 deleterious(0) probably_damaging(0.996) TCGA-VQ-A91D-01 2 101654090 101654090 G A TBC1D8 Silent p.S437S 0.33 TCGA-VQ-A91D-01 2 101666881 101666881 G A TBC1D8 Missense_Mutation p.P270L 0.35 tolerated(0.09) probably_damaging(0.948) TCGA-VQ-A91D-01 2 102641127 102641127 G A IL1R2 Missense_Mutation p.R295H 0.31 tolerated(0.16) benign(0.033) TCGA-VQ-A91D-01 2 102956584 102956584 C T IL1RL1 Missense_Mutation p.A100V 0.10 tolerated(1) benign(0.004) TCGA-VQ-A91D-01 2 10560040 10560040 G A HPCAL1 Missense_Mutation p.A53T 0.27 tolerated(0.17) benign(0.064) TCGA-VQ-A91D-01 2 106509637 106509637 G A NCK2 3'UTR 0.50 TCGA-VQ-A91D-01 2 109276154 109276154 G A LIMS1 Silent p.L92L 0.11 TCGA-VQ-A91D-01 2 109352001 109352001 A T RANBP2 Missense_Mutation p.D140V 0.18 deleterious(0.01) benign(0.016) TCGA-VQ-A91D-01 2 111551656 111551656 C T ACOXL Nonsense_Mutation p.Q84* 0.30 TCGA-VQ-A91D-01 2 113060881 113060881 A - ZC3H6 Frame_Shift_Del p.R99Efs*23 0.27 TCGA-VQ-A91D-01 2 113514118 113514118 G A CKAP2L Missense_Mutation p.T277M 0.37 deleterious(0) probably_damaging(0.965) TCGA-VQ-A91D-01 2 113763637 113763637 G A IL36A Missense_Mutation p.V33I 0.28 deleterious(0.03) possibly_damaging(0.566) TCGA-VQ-A91D-01 2 11750963 11750963 C T GREB1 Missense_Mutation p.P939L 0.33 deleterious(0) possibly_damaging(0.586) TCGA-VQ-A91D-01 2 11802268 11802268 C T NTSR2 Silent p.P241P 0.27 TCGA-VQ-A91D-01 2 120718457 120718457 T - PTPN4 Frame_Shift_Del p.W738Gfs*3 0.45 TCGA-VQ-A91D-01 2 128399651 128399651 G A LIMS2 Silent p.N235N 0.40 TCGA-VQ-A91D-01 2 130832989 130832989 T - POTEF Frame_Shift_Del p.R686Gfs*6 0.29 TCGA-VQ-A91D-01 2 131356313 131356313 G A CFC1 Missense_Mutation p.P50L 0.24 tolerated(0.17) benign(0.101) TCGA-VQ-A91D-01 2 132290949 132290949 G A CCDC74A Missense_Mutation p.R372H 0.56 deleterious(0) probably_damaging(0.998) TCGA-VQ-A91D-01 2 133486470 133486470 T C NCKAP5 Silent p.S1833S 0.56 TCGA-VQ-A91D-01 2 148683686 148683686 A - ACVR2A Frame_Shift_Del p.K437Rfs*5 0.44 TCGA-VQ-A91D-01 2 149447829 149447829 A - EPC2 Frame_Shift_Del p.E70Rfs*39 0.50 TCGA-VQ-A91D-01 2 15694183 15694183 A G NBAS Splice_Site p.X96_splice 0.17 TCGA-VQ-A91D-01 2 159481686 159481686 C T PKP4 Silent p.N300N 0.36 TCGA-VQ-A91D-01 2 159672272 159672272 C T DAPL1 Missense_Mutation p.A88V 0.33 deleterious(0.01) possibly_damaging(0.892) TCGA-VQ-A91D-01 2 160295112 160295112 G A BAZ2B Missense_Mutation p.A332V 0.34 benign(0) TCGA-VQ-A91D-01 2 1652006 1652006 T C PXDN Silent p.A1182A 0.36 TCGA-VQ-A91D-01 2 166771769 166771769 T - TTC21B Frame_Shift_Del p.M694Wfs*6 0.23 TCGA-VQ-A91D-01 2 166771834 166771834 C T TTC21B Missense_Mutation p.R672Q 0.35 tolerated(0.72) benign(0.001) TCGA-VQ-A91D-01 2 166848697 166848697 C A SCN1A Missense_Mutation p.K1696N 0.32 deleterious(0.02) probably_damaging(0.984) TCGA-VQ-A91D-01 2 168725501 168725501 C T B3GALT1 5'UTR 0.31 TCGA-VQ-A91D-01 2 169792939 169792939 G A ABCB11 Missense_Mutation p.A872V 0.26 deleterious(0.04) benign(0.217) TCGA-VQ-A91D-01 2 170077066 170077066 G A LRP2 Missense_Mutation p.T1849I 0.53 possibly_damaging(0.713) TCGA-VQ-A91D-01 2 172584342 172584342 G A DYNC1I2 Missense_Mutation p.M336I 0.45 deleterious(0.02) benign(0.011) TCGA-VQ-A91D-01 2 172700892 172700892 G A SLC25A12 Missense_Mutation p.T151M 0.20 deleterious(0) probably_damaging(0.957) TCGA-VQ-A91D-01 2 175613539 175613539 G A CHRNA1 Silent p.I362I 0.29 TCGA-VQ-A91D-01 2 175945415 175945415 C T ATF2 Missense_Mutation p.A422T 0.34 tolerated(0.43) benign(0.121) TCGA-VQ-A91D-01 2 176964892 176964892 C T HOXD12 Silent p.P121P 0.28 TCGA-VQ-A91D-01 2 17698737 17698737 T - RAD51AP2 Frame_Shift_Del p.T316Lfs*2 0.28 TCGA-VQ-A91D-01 2 176995386 176995386 G A HOXD8 Missense_Mutation p.G98R 0.60 deleterious(0.02) benign(0.01) TCGA-VQ-A91D-01 2 179393526 179393526 T C TTN Missense_Mutation p.Y35651C 0.30 TCGA-VQ-A91D-01 2 179410629 179410629 G A TTN Silent p.Y31778Y 0.32 TCGA-VQ-A91D-01 2 179430422 179430422 G T TTN Missense_Mutation p.L26813M 0.27 TCGA-VQ-A91D-01 2 179435034 179435034 A T TTN Nonsense_Mutation p.Y25275* 0.26 TCGA-VQ-A91D-01 2 179435743 179435743 G A TTN Missense_Mutation p.T25039I 0.35 TCGA-VQ-A91D-01 2 179529246 179529246 T G TTN Missense_Mutation p.E12074A 0.39 TCGA-VQ-A91D-01 2 179542389 179542389 A G TTN Missense_Mutation p.V11417A 0.35 TCGA-VQ-A91D-01 2 179594212 179594212 C T TTN Missense_Mutation p.G6224E 0.38 TCGA-VQ-A91D-01 2 179664230 179664230 T C TTN Missense_Mutation p.T300A 0.20 TCGA-VQ-A91D-01 2 179981395 179981395 C A SESTD1 Missense_Mutation p.Q549H 0.31 deleterious(0.02) possibly_damaging(0.859) TCGA-VQ-A91D-01 2 180815330 180815330 G A CWC22 Silent p.S683S 0.28 TCGA-VQ-A91D-01 2 182781007 182781007 C A SSFA2 Silent p.A880A 0.13 TCGA-VQ-A91D-01 2 186672991 186672992 - A FSIP2 Frame_Shift_Ins p.V6411Sfs*6 0.29 TCGA-VQ-A91D-01 2 187540550 187540550 G A ITGAV Missense_Mutation p.E942K 0.43 tolerated(0.22) possibly_damaging(0.818) TCGA-VQ-A91D-01 2 189839208 189839208 A G COL3A1 5'UTR 0.42 TCGA-VQ-A91D-01 2 190620102 190620102 C A OSGEPL1 Nonsense_Mutation p.G136* 0.30 TCGA-VQ-A91D-01 2 191859909 191859909 C T STAT1 Silent p.R274R 0.19 TCGA-VQ-A91D-01 2 192700729 192700729 C T SDPR Missense_Mutation p.A400T 0.26 tolerated_low_confidence(0.57) benign(0.002) TCGA-VQ-A91D-01 2 192700838 192700838 C - SDPR Frame_Shift_Del p.S364Vfs*11 0.09 TCGA-VQ-A91D-01 2 192700961 192700961 C T SDPR Silent p.E322E 0.20 TCGA-VQ-A91D-01 2 193059203 193059203 G A TMEFF2 Silent p.C16C 0.33 TCGA-VQ-A91D-01 2 197631351 197631351 G A GTF3C3 Silent p.L826L 0.21 TCGA-VQ-A91D-01 2 200213429 200213429 T C SATB2 Missense_Mutation p.T390A 0.33 deleterious(0) probably_damaging(0.944) TCGA-VQ-A91D-01 2 202093741 202093741 C A CASP10 Missense_Mutation p.L501M 0.35 tolerated(0.18) benign(0.027) TCGA-VQ-A91D-01 2 202150030 202150030 C T CASP8 Nonsense_Mutation p.R491* 0.19 TCGA-VQ-A91D-01 2 203836377 203836377 G A CARF Missense_Mutation p.R416H 0.41 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91D-01 2 204137472 204137472 G A CYP20A1 Splice_Site p.X227_splice 0.23 TCGA-VQ-A91D-01 2 204735456 204735456 C T CTLA4 Missense_Mutation p.A86V 0.30 deleterious(0) possibly_damaging(0.614) TCGA-VQ-A91D-01 2 204735566 204735566 G A CTLA4 Missense_Mutation p.D123N 0.39 deleterious(0.02) possibly_damaging(0.46) TCGA-VQ-A91D-01 2 206305310 206305310 C T PARD3B Silent p.G924G 0.30 TCGA-VQ-A91D-01 2 207619822 207619822 C T MDH1B Missense_Mutation p.R274H 0.33 deleterious(0.02) benign(0.002) TCGA-VQ-A91D-01 2 207988687 207988687 C T KLF7 Missense_Mutation p.A182T 0.27 tolerated(0.58) benign(0.004) TCGA-VQ-A91D-01 2 20823725 20823725 G A HS1BP3 Missense_Mutation p.P284L 0.24 deleterious(0.03) probably_damaging(1) TCGA-VQ-A91D-01 2 208420379 208420379 C T CREB1 Missense_Mutation p.A7V 0.20 tolerated_low_confidence(1) benign(0.003) TCGA-VQ-A91D-01 2 208841992 208841992 G A PLEKHM3 Missense_Mutation p.A310V 0.30 tolerated(0.43) benign(0.031) TCGA-VQ-A91D-01 2 209142395 209142395 T C PIKFYVE Silent p.C192C 0.37 TCGA-VQ-A91D-01 2 209150573 209150573 T A PIKFYVE Missense_Mutation p.L246H 0.28 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91D-01 2 209200572 209200572 A G PIKFYVE Missense_Mutation p.T1438A 0.39 tolerated(0.14) benign(0.314) TCGA-VQ-A91D-01 2 211019062 211019062 A - KANSL1L Frame_Shift_Del p.L82* 0.25 TCGA-VQ-A91D-01 2 211539636 211539636 G A CPS1 Missense_Mutation p.R1377Q 0.48 deleterious(0.05) benign(0.043) TCGA-VQ-A91D-01 2 212483900 212483900 A G ERBB4 Splice_Site p.X767_splice 0.39 TCGA-VQ-A91D-01 2 215645489 215645489 C T BARD1 Missense_Mutation p.R370H 0.31 tolerated(0.14) benign(0) TCGA-VQ-A91D-01 2 215646085 215646085 T - BARD1 Frame_Shift_Del p.D172Mfs*40 0.17 TCGA-VQ-A91D-01 2 215843156 215843156 T - ABCA12 Frame_Shift_Del p.N1671Ifs*4 0.23 TCGA-VQ-A91D-01 2 215854310 215854310 G A ABCA12 Silent p.S1220S 0.45 TCGA-VQ-A91D-01 2 215872463 215872463 A T ABCA12 Silent p.I860I 0.16 TCGA-VQ-A91D-01 2 215890453 215890453 G A ABCA12 Missense_Mutation p.R411C 0.28 deleterious(0.03) benign(0.276) TCGA-VQ-A91D-01 2 216257688 216257688 G A FN1 Silent p.G1345G 0.28 TCGA-VQ-A91D-01 2 217300164 217300164 A G SMARCAL1 Missense_Mutation p.D530G 0.20 deleterious(0) probably_damaging(0.998) TCGA-VQ-A91D-01 2 219222782 219222782 G T C2orf62 Missense_Mutation p.E114D 0.07 deleterious(0.01) possibly_damaging(0.765) TCGA-VQ-A91D-01 2 219341647 219341647 C A USP37 Missense_Mutation p.E653D 0.38 tolerated(0.26) benign(0.007) TCGA-VQ-A91D-01 2 219529514 219529514 C - RNF25 Frame_Shift_Del p.G250Efs*29 0.28 TCGA-VQ-A91D-01 2 219556942 219556942 C T STK36 Missense_Mutation p.T614M 0.33 tolerated(0.07) possibly_damaging(0.88) TCGA-VQ-A91D-01 2 219559039 219559039 G A STK36 Missense_Mutation p.V797I 0.37 tolerated(0.21) benign(0.18) TCGA-VQ-A91D-01 2 219618908 219618908 G A TTLL4 Silent p.T1132T 0.37 TCGA-VQ-A91D-01 2 219693291 219693291 G A PRKAG3 Silent p.N222N 0.46 TCGA-VQ-A91D-01 2 219746916 219746916 C - WNT10A Frame_Shift_Del p.P51Rfs*12 0.21 TCGA-VQ-A91D-01 2 219892361 219892361 C T CCDC108 Intron 0.25 TCGA-VQ-A91D-01 2 219897216 219897216 G - CCDC108 Frame_Shift_Del p.I208Sfs*37 0.27 TCGA-VQ-A91D-01 2 220046968 220046969 - C FAM134A Frame_Shift_Ins p.D420Rfs*40 0.23 TCGA-VQ-A91D-01 2 220081103 220081103 C - ABCB6 Frame_Shift_Del p.G318Vfs*9 0.25 TCGA-VQ-A91D-01 2 220168457 220168457 C A PTPRN Missense_Mutation p.R126M 0.41 deleterious(0.02) probably_damaging(0.947) TCGA-VQ-A91D-01 2 220412407 220412407 G A TMEM198 Missense_Mutation p.V116M 0.29 deleterious(0) possibly_damaging(0.867) TCGA-VQ-A91D-01 2 220504282 220504282 G - SLC4A3 Frame_Shift_Del p.L1064Sfs*24 0.28 TCGA-VQ-A91D-01 2 222322584 222322584 A G EPHA4 Splice_Site p.X481_splice 0.32 TCGA-VQ-A91D-01 2 223085003 223085003 C T PAX3 Silent p.T343T 0.27 TCGA-VQ-A91D-01 2 226447266 226447266 C T NYAP2 Missense_Mutation p.A378V 0.50 deleterious(0.03) benign(0.019) TCGA-VQ-A91D-01 2 227659927 227659927 A G IRS1 Silent p.G1176G 0.34 TCGA-VQ-A91D-01 2 227872864 227872864 C T COL4A4 Missense_Mutation p.R1560H 0.27 unknown(0) TCGA-VQ-A91D-01 2 228195532 228195532 A C MFF Missense_Mutation p.M77L 0.18 deleterious(0) probably_damaging(0.997) TCGA-VQ-A91D-01 2 230312192 230312192 G A DNER Silent p.N442N 0.24 TCGA-VQ-A91D-01 2 230673039 230673039 T C TRIP12 Silent p.G708G 0.16 TCGA-VQ-A91D-01 2 231048296 231048296 T C SP110 Missense_Mutation p.H447R 0.24 tolerated(0.96) benign(0.402) TCGA-VQ-A91D-01 2 232079701 232079701 C A ARMC9 Missense_Mutation p.S112Y 0.29 deleterious(0.03) benign(0.223) TCGA-VQ-A91D-01 2 232577994 232577994 A - PTMA 3'UTR 0.19 TCGA-VQ-A91D-01 2 233651919 233651919 C T GIGYF2 Missense_Mutation p.R220C 0.20 probably_damaging(0.998) TCGA-VQ-A91D-01 2 233710483 233710483 A T GIGYF2 Missense_Mutation p.E1137V 0.22 unknown(0) TCGA-VQ-A91D-01 2 234164818 234164818 C T ATG16L1 Silent p.D62D 0.26 TCGA-VQ-A91D-01 2 234638089 234638089 T G UGT1A3 Missense_Mutation p.F106C 0.37 deleterious(0.02) possibly_damaging(0.823) TCGA-VQ-A91D-01 2 234652529 234652529 G A UGT1A10 Intron 0.36 TCGA-VQ-A91D-01 2 234750504 234750504 T - HJURP Frame_Shift_Del p.T308Hfs*24 0.24 TCGA-VQ-A91D-01 2 235951722 235951722 G A SH3BP4 Missense_Mutation p.R770H 0.58 deleterious(0) probably_damaging(0.915) TCGA-VQ-A91D-01 2 236715932 236715932 G A AGAP1 Missense_Mutation p.R336H 0.40 tolerated(0.14) benign(0.02) TCGA-VQ-A91D-01 2 238249551 238249551 C T COL6A3 Missense_Mutation p.A2670T 0.28 unknown(0) TCGA-VQ-A91D-01 2 238280909 238280909 C T COL6A3 Missense_Mutation p.V1251I 0.39 benign(0.063) TCGA-VQ-A91D-01 2 238881818 238881818 G A UBE2F Silent p.A23A 0.26 TCGA-VQ-A91D-01 2 239975155 239975155 C G HDAC4 Splice_Site p.X1072_splice 0.12 TCGA-VQ-A91D-01 2 241401733 241401733 T C GPC1 Missense_Mutation p.Y151H 0.48 deleterious(0) probably_damaging(0.992) TCGA-VQ-A91D-01 2 241463316 241463316 C T ANKMY1 Silent p.A517A 0.39 TCGA-VQ-A91D-01 2 241468581 241468581 G A ANKMY1 Missense_Mutation p.R187C 0.29 deleterious(0.01) benign(0.049) TCGA-VQ-A91D-01 2 241534576 241534576 A G CAPN10 Missense_Mutation p.Y378C 0.33 tolerated(0.46) benign(0.002) TCGA-VQ-A91D-01 2 241656637 241656637 C T KIF1A 3'UTR 0.42 TCGA-VQ-A91D-01 2 241991568 241991568 G A SNED1 Missense_Mutation p.E655K 0.36 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91D-01 2 242004863 242004864 CA - SNED1 Frame_Shift_Del p.T955Rfs*33 0.26 TCGA-VQ-A91D-01 2 242066637 242066637 A G PASK Missense_Mutation p.C565R 0.38 tolerated(0.17) possibly_damaging(0.576) TCGA-VQ-A91D-01 2 242168998 242168998 T C HDLBP 3'UTR 0.23 TCGA-VQ-A91D-01 2 242743008 242743008 C T GAL3ST2 Silent p.G208G 0.33 TCGA-VQ-A91D-01 2 24533401 24533401 G A ITSN2 Silent p.T171T 0.37 TCGA-VQ-A91D-01 2 24965041 24965041 A G NCOA1 Missense_Mutation p.Q1231R 0.33 deleterious(0.01) probably_damaging(0.992) TCGA-VQ-A91D-01 2 25141551 25141551 G A ADCY3 Silent p.S102S 0.33 TCGA-VQ-A91D-01 2 25464487 25464487 G A DNMT3A Missense_Mutation p.R676W 0.24 deleterious(0.01) probably_damaging(1) TCGA-VQ-A91D-01 2 25523009 25523009 G - DNMT3A Frame_Shift_Del p.P59Rfs*13 0.38 TCGA-VQ-A91D-01 2 26178493 26178493 G A KIF3C Missense_Mutation p.R563W 0.31 possibly_damaging(0.908) TCGA-VQ-A91D-01 2 26257462 26257462 C G RAB10 5'UTR 0.40 TCGA-VQ-A91D-01 2 26416577 26416577 G C HADHA Missense_Mutation p.A585G 0.07 deleterious(0) possibly_damaging(0.582) TCGA-VQ-A91D-01 2 26680979 26680979 C A OTOF 3'UTR 0.38 TCGA-VQ-A91D-01 2 26696038 26696038 C T OTOF Missense_Mutation p.R1232Q 0.28 tolerated(0.06) benign(0.235) TCGA-VQ-A91D-01 2 26800479 26800479 C - C2orf70 Frame_Shift_Del p.L150Sfs*17 0.22 TCGA-VQ-A91D-01 2 27246235 27246235 C T MAPRE3 Missense_Mutation p.P53S 0.23 deleterious(0.01) probably_damaging(0.966) TCGA-VQ-A91D-01 2 27293091 27293091 T A AGBL5 Missense_Mutation p.V874D 0.09 deleterious_low_confidence(0) benign(0.143) TCGA-VQ-A91D-01 2 27360590 27360590 G A C2orf53 Missense_Mutation p.A203V 0.49 deleterious(0.01) probably_damaging(0.998) TCGA-VQ-A91D-01 2 27464969 27464969 A G CAD Missense_Mutation p.H2025R 0.13 deleterious(0) probably_damaging(0.993) TCGA-VQ-A91D-01 2 27598754 27598754 C T SNX17 Silent p.G340G 0.20 TCGA-VQ-A91D-01 2 28855868 28855868 G A PLB1 Missense_Mutation p.G1354R 0.23 deleterious(0) probably_damaging(0.917) TCGA-VQ-A91D-01 2 30143317 30143317 T C ALK Missense_Mutation p.D70G 0.25 deleterious_low_confidence(0) benign(0.174) TCGA-VQ-A91D-01 2 3482698 3482698 C T TRAPPC12 Silent p.N653N 0.36 TCGA-VQ-A91D-01 2 3504695 3504695 A G ADI1 Missense_Mutation p.Y104H 0.36 deleterious(0.01) probably_damaging(1) TCGA-VQ-A91D-01 2 36706780 36706780 G A CRIM1 Missense_Mutation p.G439R 0.31 deleterious(0.02) probably_damaging(1) TCGA-VQ-A91D-01 2 36740766 36740766 T C CRIM1 Silent p.H616H 0.10 TCGA-VQ-A91D-01 2 3687920 3687920 A G COLEC11 Silent p.P123P 0.14 TCGA-VQ-A91D-01 2 37458693 37458693 C T CEBPZ Silent p.E6E 0.07 TCGA-VQ-A91D-01 2 37480392 37480392 G A PRKD3 Silent p.Y867Y 0.27 TCGA-VQ-A91D-01 2 37507041 37507041 T C PRKD3 Missense_Mutation p.I340M 0.35 tolerated(0.15) benign(0.004) TCGA-VQ-A91D-01 2 39050191 39050191 G A DHX57 Missense_Mutation p.R1079C 0.24 tolerated(0.26) probably_damaging(1) TCGA-VQ-A91D-01 2 39088252 39088252 C T DHX57 Missense_Mutation p.D434N 0.17 tolerated(0.5) benign(0.028) TCGA-VQ-A91D-01 2 39213188 39213188 G C SOS1 Missense_Mutation p.P1260R 0.29 deleterious_low_confidence(0.04) possibly_damaging(0.612) TCGA-VQ-A91D-01 2 43783384 43783385 - A THADA Intron 0.30 TCGA-VQ-A91D-01 2 44079541 44079541 C T ABCG8 Missense_Mutation p.R204C 0.28 deleterious(0.02) benign(0.224) TCGA-VQ-A91D-01 2 44539901 44539901 A T SLC3A1 Intron 0.29 TCGA-VQ-A91D-01 2 45715466 45715466 C T SRBD1 Missense_Mutation p.V627I 0.35 tolerated(0.06) possibly_damaging(0.731) TCGA-VQ-A91D-01 2 46607592 46607592 G T EPAS1 Missense_Mutation p.S594I 0.29 deleterious(0.03) benign(0.034) TCGA-VQ-A91D-01 2 50724558 50724558 A - NRXN1 Frame_Shift_Del p.F971Sfs*8 0.32 TCGA-VQ-A91D-01 2 54101589 54101589 T C PSME4 Missense_Mutation p.T1663A 0.39 tolerated(0.51) benign(0.09) TCGA-VQ-A91D-01 2 54856339 54856339 C T SPTBN1 Missense_Mutation p.R690C 0.40 deleterious(0.01) probably_damaging(0.969) TCGA-VQ-A91D-01 2 55253915 55253915 A C RTN4 Missense_Mutation p.S440R 0.07 deleterious(0.01) possibly_damaging(0.71) TCGA-VQ-A91D-01 2 60688057 60688057 C A BCL11A Missense_Mutation p.A664S 0.09 deleterious(0) possibly_damaging(0.515) TCGA-VQ-A91D-01 2 61145359 61145359 G A REL Missense_Mutation p.R190H 0.32 deleterious(0) probably_damaging(0.996) TCGA-VQ-A91D-01 2 61258615 61258615 C - PEX13 Frame_Shift_Del p.P53Hfs*16 0.30 TCGA-VQ-A91D-01 2 61724139 61724139 G T XPO1 Missense_Mutation p.L255M 0.17 deleterious(0.01) probably_damaging(0.992) TCGA-VQ-A91D-01 2 62728385 62728386 CT - TMEM17 Frame_Shift_Del p.G186Rfs*18 0.21 TCGA-VQ-A91D-01 2 63712088 63712088 C T WDPCP Missense_Mutation p.R96H 0.08 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 2 66796229 66796229 C T MEIS1 Missense_Mutation p.H388Y 0.32 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-VQ-A91D-01 2 67626692 67626692 A - ETAA1 Frame_Shift_Del p.K123Nfs*46 0.35 TCGA-VQ-A91D-01 2 69173453 69173453 T A GKN2 Missense_Mutation p.E152V 0.36 tolerated(0.06) benign(0.338) TCGA-VQ-A91D-01 2 69177322 69177322 T - GKN2 Frame_Shift_Del p.N47Ifs*38 0.33 TCGA-VQ-A91D-01 2 69409751 69409751 C T ANTXR1 Missense_Mutation p.R438C 0.21 tolerated(0.07) probably_damaging(0.953) TCGA-VQ-A91D-01 2 70131463 70131463 T - SNRNP27 3'UTR 0.59 TCGA-VQ-A91D-01 2 70188386 70188386 C A ASPRV1 Missense_Mutation p.E145D 0.42 tolerated(1) benign(0) TCGA-VQ-A91D-01 2 70408460 70408460 G A C2orf42 Missense_Mutation p.R220C 0.30 deleterious(0.03) possibly_damaging(0.629) TCGA-VQ-A91D-01 2 70910811 70910811 T C ADD2 Missense_Mutation p.Q346R 0.41 tolerated(0.77) benign(0.001) TCGA-VQ-A91D-01 2 71303824 71303824 T A NAGK Missense_Mutation p.I299N 0.39 deleterious(0.04) probably_damaging(0.966) TCGA-VQ-A91D-01 2 71633308 71633308 G A ZNF638 Silent p.P1017P 0.47 TCGA-VQ-A91D-01 2 7164614 7164614 C T RNF144A Silent p.H208H 0.33 TCGA-VQ-A91D-01 2 71797750 71797751 - C DYSF Frame_Shift_Ins p.E1039Gfs*11 0.39 TCGA-VQ-A91D-01 2 73316229 73316229 C T RAB11FIP5 Missense_Mutation p.A216T 0.27 tolerated(0.28) possibly_damaging(0.603) TCGA-VQ-A91D-01 2 73316547 73316547 C T RAB11FIP5 Intron 0.24 TCGA-VQ-A91D-01 2 73447794 73447794 G A SMYD5 Missense_Mutation p.M117I 0.29 tolerated(0.19) benign(0.022) TCGA-VQ-A91D-01 2 73518841 73518841 C T EGR4 Missense_Mutation p.R505H 0.32 deleterious(0) probably_damaging(0.998) TCGA-VQ-A91D-01 2 73519124 73519124 G A EGR4 Nonsense_Mutation p.Q411* 0.19 TCGA-VQ-A91D-01 2 74140705 74140705 C T ACTG2 Missense_Mutation p.A182V 0.34 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-VQ-A91D-01 2 74596474 74596474 A G DCTN1 Missense_Mutation p.Y513H 0.40 tolerated(0.13) benign(0.443) TCGA-VQ-A91D-01 2 74702443 74702443 G A CCDC142 Missense_Mutation p.P562S 0.32 tolerated(0.35) possibly_damaging(0.698) TCGA-VQ-A91D-01 2 74761762 74761762 A G LOXL3 Silent p.G573G 0.59 TCGA-VQ-A91D-01 2 75108964 75108964 T C HK2 Missense_Mutation p.V566A 0.15 tolerated(0.23) benign(0.008) TCGA-VQ-A91D-01 2 75720519 75720519 C T EVA1A Missense_Mutation p.R101H 0.27 tolerated(0.06) probably_damaging(0.999) TCGA-VQ-A91D-01 2 80136849 80136849 C T CTNNA2 Missense_Mutation p.R328C 0.23 deleterious(0) probably_damaging(0.979) TCGA-VQ-A91D-01 2 84517956 84517956 G A FUNDC2P2 RNA 0.17 TCGA-VQ-A91D-01 2 85981420 85981420 C T ATOH8 Silent p.R36R 0.15 TCGA-VQ-A91D-01 2 86307988 86307988 G A POLR1A Missense_Mutation p.A346V 0.33 tolerated(0.05) probably_damaging(1) TCGA-VQ-A91D-01 2 88390625 88390625 G A SMYD1 Missense_Mutation p.C208Y 0.32 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91D-01 2 88874693 88874693 C T EIF2AK3 Missense_Mutation p.D770N 0.38 deleterious(0.01) possibly_damaging(0.461) TCGA-VQ-A91D-01 2 89247302 89247302 C T IGKV1-5 5'UTR 0.27 TCGA-VQ-A91D-01 2 8938387 8938387 G A KIDINS220 Missense_Mutation p.A315V 0.35 tolerated(0.51) possibly_damaging(0.67) TCGA-VQ-A91D-01 2 95537493 95537493 G A TEKT4 Missense_Mutation p.A57T 0.37 tolerated(0.66) benign(0.259) TCGA-VQ-A91D-01 2 96523145 96523145 C T ANKRD36C Missense_Mutation p.R358K 0.32 tolerated(0.81) benign(0.023) TCGA-VQ-A91D-01 2 96942888 96942888 G A SNRNP200 Missense_Mutation p.A2008V 0.38 deleterious(0.05) possibly_damaging(0.876) TCGA-VQ-A91D-01 2 97217927 97217927 C - ARID5A Frame_Shift_Del p.P556Qfs*145 0.24 TCGA-VQ-A91D-01 2 9991755 9991755 C T TAF1B Silent p.G97G 0.17 TCGA-VQ-A91D-01 3 101383959 101383959 G T ZBTB11 Missense_Mutation p.T491K 0.13 tolerated_low_confidence(0.91) benign(0.013) TCGA-VQ-A91D-01 3 102153983 102153984 - G ZPLD1 Frame_Shift_Ins p.N11Kfs*2 0.18 TCGA-VQ-A91D-01 3 10391831 10391831 C T ATP2B2 Missense_Mutation p.R790H 0.10 deleterious(0) probably_damaging(0.919) TCGA-VQ-A91D-01 3 105378037 105378037 C T CBLB Missense_Mutation p.R909Q 0.23 tolerated_low_confidence(0.07) benign(0.203) TCGA-VQ-A91D-01 3 107435587 107435587 G A BBX Missense_Mutation p.R99H 0.42 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91D-01 3 111845872 111845873 - T GCSAM Frame_Shift_Ins p.I53Nfs*5 0.21 TCGA-VQ-A91D-01 3 113627823 113627823 T C GRAMD1C Missense_Mutation p.S270P 0.28 tolerated(0.44) benign(0.003) TCGA-VQ-A91D-01 3 114069726 114069726 C T ZBTB20 Missense_Mutation p.R400Q 0.23 deleterious(0.03) possibly_damaging(0.885) TCGA-VQ-A91D-01 3 119316764 119316764 C T PLA1A Missense_Mutation p.P2S 0.27 tolerated_low_confidence(0.12) benign(0.011) TCGA-VQ-A91D-01 3 119666192 119666192 C T GSK3B Missense_Mutation p.E97K 0.29 deleterious(0.01) probably_damaging(0.912) TCGA-VQ-A91D-01 3 119886399 119886399 C T GPR156 Missense_Mutation p.S642N 0.42 tolerated(0.19) benign(0.037) TCGA-VQ-A91D-01 3 119886715 119886715 G A GPR156 Missense_Mutation p.R537W 0.37 tolerated(0.07) benign(0.01) TCGA-VQ-A91D-01 3 121437294 121437294 G A GOLGB1 Missense_Mutation p.R276C 0.22 probably_damaging(1) TCGA-VQ-A91D-01 3 121613239 121613241 CTT - SLC15A2 5'UTR 0.35 TCGA-VQ-A91D-01 3 122629731 122629731 C T SEMA5B Missense_Mutation p.G1139R 0.34 tolerated_low_confidence(0.07) possibly_damaging(0.882) TCGA-VQ-A91D-01 3 123419576 123419576 G A MYLK Silent p.D913D 0.25 TCGA-VQ-A91D-01 3 124132414 124132414 G A KALRN Missense_Mutation p.R813H 0.19 tolerated(0.99) benign(0.013) TCGA-VQ-A91D-01 3 124567303 124567303 T C ITGB5 Missense_Mutation p.D155G 0.15 tolerated(0.23) possibly_damaging(0.472) TCGA-VQ-A91D-01 3 124721139 124721139 C T HEG1 Silent p.A1106A 0.20 TCGA-VQ-A91D-01 3 124739679 124739680 - T HEG1 Frame_Shift_Ins p.N403Kfs*2 0.30 TCGA-VQ-A91D-01 3 124829094 124829094 C T SLC12A8 Missense_Mutation p.R333H 0.16 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91D-01 3 126723738 126723738 C T PLXNA1 Missense_Mutation p.R544W 0.30 deleterious(0) possibly_damaging(0.67) TCGA-VQ-A91D-01 3 126723832 126723832 T C PLXNA1 Missense_Mutation p.V575A 0.13 deleterious(0.04) possibly_damaging(0.458) TCGA-VQ-A91D-01 3 126737232 126737232 C T PLXNA1 Silent p.G1252G 0.39 TCGA-VQ-A91D-01 3 127774416 127774416 T C SEC61A1 Missense_Mutation p.C45R 0.34 deleterious(0.01) probably_damaging(0.995) TCGA-VQ-A91D-01 3 128204623 128204623 C - GATA2 Frame_Shift_Del p.G273Dfs*53 0.21 TCGA-VQ-A91D-01 3 12856707 12856707 C T CAND2 Silent p.C358C 0.10 TCGA-VQ-A91D-01 3 128976319 128976319 G A COPG1 Missense_Mutation p.A196T 0.09 deleterious(0) probably_damaging(0.957) TCGA-VQ-A91D-01 3 129116123 129116123 G A EFCAB12 3'Flank 0.19 TCGA-VQ-A91D-01 3 129156716 129156716 C T MBD4 Missense_Mutation p.C61Y 0.37 deleterious(0.02) benign(0.316) TCGA-VQ-A91D-01 3 129195317 129195317 A G IFT122 Missense_Mutation p.T377A 0.30 tolerated(0.52) benign(0.09) TCGA-VQ-A91D-01 3 129289962 129289962 G T PLXND1 Missense_Mutation p.P1174H 0.34 deleterious(0.01) benign(0.022) TCGA-VQ-A91D-01 3 129547260 129547260 T - TMCC1 5'UTR 0.27 TCGA-VQ-A91D-01 3 12966178 12966178 C - IQSEC1 Frame_Shift_Del p.V559Wfs*15 0.35 TCGA-VQ-A91D-01 3 130293305 130293305 C T COL6A6 Silent p.F1161F 0.44 TCGA-VQ-A91D-01 3 130737451 130737451 T C ASTE1 Missense_Mutation p.Y471C 0.42 deleterious(0) possibly_damaging(0.472) TCGA-VQ-A91D-01 3 132224254 132224254 A - DNAJC13 Frame_Shift_Del p.G1667Vfs*22 0.25 TCGA-VQ-A91D-01 3 136035800 136035801 - T PCCB Frame_Shift_Ins p.E351* 0.23 TCGA-VQ-A91D-01 3 13655629 13655629 G A FBLN2 Missense_Mutation p.R565H 0.15 deleterious(0.02) benign(0.063) TCGA-VQ-A91D-01 3 13679285 13679285 G A FBLN2 Missense_Mutation p.V1188M 0.30 deleterious(0.04) possibly_damaging(0.681) TCGA-VQ-A91D-01 3 1371501 1371501 A - CNTN6 Frame_Shift_Del p.K418Sfs*63 0.26 TCGA-VQ-A91D-01 3 139069847 139069847 A G MRPS22 Missense_Mutation p.D226G 0.29 deleterious(0.05) probably_damaging(0.969) TCGA-VQ-A91D-01 3 139080056 139080056 C A COPB2 Missense_Mutation p.A693S 0.36 tolerated(0.11) possibly_damaging(0.817) TCGA-VQ-A91D-01 3 140167396 140167396 G A CLSTN2 Missense_Mutation p.G275R 0.20 deleterious(0.02) probably_damaging(0.915) TCGA-VQ-A91D-01 3 140785626 140785626 T A SPSB4 Missense_Mutation p.I227N 0.28 deleterious(0) probably_damaging(0.986) TCGA-VQ-A91D-01 3 141164024 141164024 A - ZBTB38 Frame_Shift_Del p.M934* 0.35 TCGA-VQ-A91D-01 3 142753761 142753761 G A U2SURP Missense_Mutation p.D629N 0.19 tolerated(0.24) benign(0.074) TCGA-VQ-A91D-01 3 145914546 145914546 C T PLSCR4 Missense_Mutation p.G220D 0.29 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 3 148920009 148920010 - A CP Frame_Shift_Ins p.E410* 0.29 TCGA-VQ-A91D-01 3 149290745 149290745 C T WWTR1 Silent p.A158A 0.09 TCGA-VQ-A91D-01 3 15062406 15062406 A - NR2C2 Frame_Shift_Del p.K195Nfs*3 0.24 TCGA-VQ-A91D-01 3 151045874 151045875 - T P2RY13 Frame_Shift_Ins p.F324Ifs*22 0.24 TCGA-VQ-A91D-01 3 151154623 151154623 C A IGSF10 Nonsense_Mutation p.E2576* 0.24 TCGA-VQ-A91D-01 3 151165584 151165584 G A IGSF10 Missense_Mutation p.R729C 0.27 tolerated(0.05) possibly_damaging(0.817) TCGA-VQ-A91D-01 3 151474886 151474886 A G AADACL2 Missense_Mutation p.H237R 0.34 deleterious(0.02) benign(0.16) TCGA-VQ-A91D-01 3 152553645 152553645 G - P2RY1 Frame_Shift_Del p.N27Tfs*18 0.26 TCGA-VQ-A91D-01 3 153994608 153994608 G A DHX36 Silent p.N923N 0.22 TCGA-VQ-A91D-01 3 155198905 155198905 C - PLCH1 Frame_Shift_Del p.G1645Vfs*47 0.19 TCGA-VQ-A91D-01 3 156763275 156763275 C T LEKR1 Silent p.G605G 0.28 TCGA-VQ-A91D-01 3 158289005 158289005 G A MLF1 5'Flank 0.22 TCGA-VQ-A91D-01 3 159706850 159706850 C - IL12A Frame_Shift_Del p.P4Lfs*76 0.18 TCGA-VQ-A91D-01 3 160120503 160120503 T A SMC4 Missense_Mutation p.S120T 0.07 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91D-01 3 160786820 160786820 C T PPM1L Missense_Mutation p.R320C 0.38 deleterious(0) possibly_damaging(0.817) TCGA-VQ-A91D-01 3 165547795 165547795 T - BCHE Frame_Shift_Del p.T343Pfs*16 0.26 TCGA-VQ-A91D-01 3 167185057 167185057 T C SERPINI2 Silent p.V88V 0.35 TCGA-VQ-A91D-01 3 167189546 167189546 T - SERPINI2 Frame_Shift_Del p.N26Ifs*27 0.27 TCGA-VQ-A91D-01 3 167246876 167246876 T A WDR49 Silent p.G438G 0.18 TCGA-VQ-A91D-01 3 169504238 169504238 T A MYNN Missense_Mutation p.D535E 0.13 tolerated_low_confidence(0.28) benign(0.003) TCGA-VQ-A91D-01 3 169835245 169835245 A G PHC3 Silent p.A654A 0.22 TCGA-VQ-A91D-01 3 17446184 17446184 A G TBC1D5 Splice_Site p.X147_splice 0.10 TCGA-VQ-A91D-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.39 tolerated(0.11) possibly_damaging(0.529) TCGA-VQ-A91D-01 3 179301201 179301201 A G ACTL6A Missense_Mutation p.R363G 0.33 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 3 179320578 179320579 - A MRPL47 Frame_Shift_Ins p.L36Sfs*2 0.28 TCGA-VQ-A91D-01 3 182553826 182553826 T C ATP11B Missense_Mutation p.Y107H 0.38 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 3 182804550 182804550 G A MCCC1 Silent p.P100P 0.21 TCGA-VQ-A91D-01 3 183469874 183469874 A G YEATS2 Missense_Mutation p.E328G 0.18 deleterious(0.01) benign(0.159) TCGA-VQ-A91D-01 3 184019680 184019680 C T PSMD2 Silent p.D175D 0.28 TCGA-VQ-A91D-01 3 184072020 184072020 G A CLCN2 Silent p.H530H 0.13 TCGA-VQ-A91D-01 3 184091304 184091304 G - THPO Frame_Shift_Del p.R99Gfs*52 0.33 TCGA-VQ-A91D-01 3 184100728 184100728 T C CHRD Splice_Site p.X355_splice 0.42 TCGA-VQ-A91D-01 3 185797702 185797702 C A ETV5 Missense_Mutation p.G185V 0.36 tolerated(0.25) benign(0.079) TCGA-VQ-A91D-01 3 186038297 186038297 A G DGKG 5'UTR 0.48 TCGA-VQ-A91D-01 3 186506923 186506924 - G EIF4A2 Frame_Shift_Ins p.R366Sfs*14 0.28 TCGA-VQ-A91D-01 3 186522430 186522430 T C RFC4 Missense_Mutation p.S25G 0.07 tolerated(0.15) benign(0.001) TCGA-VQ-A91D-01 3 186953906 186953906 G - MASP1 Frame_Shift_Del p.H585Tfs*16 0.16 TCGA-VQ-A91D-01 3 189712006 189712006 C T LEPREL1 Missense_Mutation p.E234K 0.32 deleterious(0) probably_damaging(0.924) TCGA-VQ-A91D-01 3 190366393 190366393 T C IL1RAP Intron 0.12 TCGA-VQ-A91D-01 3 193355049 193355049 T C OPA1 Silent p.N320N 0.22 TCGA-VQ-A91D-01 3 195013054 195013054 G A ACAP2 Silent p.D631D 0.35 TCGA-VQ-A91D-01 3 196674360 196674360 G - PIGZ Frame_Shift_Del p.R470Gfs*30 0.23 TCGA-VQ-A91D-01 3 20017093 20017093 C T RAB5A Missense_Mutation p.A55V 0.20 deleterious(0) probably_damaging(0.956) TCGA-VQ-A91D-01 3 20216067 20216068 - T SGOL1 Frame_Shift_Ins p.T319Nfs*15 0.26 TCGA-VQ-A91D-01 3 3076406 3076406 G T CNTN4 Missense_Mutation p.S625I 0.35 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91D-01 3 31617993 31617993 T C STT3B Silent p.G140G 0.33 TCGA-VQ-A91D-01 3 35785373 35785373 A G ARPP21 Missense_Mutation p.T651A 0.12 tolerated(0.34) benign(0.001) TCGA-VQ-A91D-01 3 36899227 36899227 G A TRANK1 Silent p.A618A 0.32 TCGA-VQ-A91D-01 3 37056008 37056008 A T MLH1 Nonsense_Mutation p.K255* 0.71 TCGA-VQ-A91D-01 3 38647627 38647627 C T SCN5A Missense_Mutation p.A385T 0.44 deleterious(0.02) probably_damaging(0.998) TCGA-VQ-A91D-01 3 38950615 38950615 A G SCN11A Missense_Mutation p.L391P 0.33 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 3 39433453 39433453 C T SLC25A38 Missense_Mutation p.A189V 0.21 tolerated(0.25) benign(0.28) TCGA-VQ-A91D-01 3 42605160 42605160 G A SEC22C Silent p.D67D 0.44 TCGA-VQ-A91D-01 3 42727236 42727236 C T KLHL40 Silent p.R42R 0.50 TCGA-VQ-A91D-01 3 42727558 42727558 G A KLHL40 Missense_Mutation p.V150M 0.35 tolerated(0.15) benign(0.427) TCGA-VQ-A91D-01 3 44598610 44598610 G A ZKSCAN7 Missense_Mutation p.R24H 0.26 tolerated(0.29) benign(0.001) TCGA-VQ-A91D-01 3 44607114 44607114 C A ZKSCAN7 Missense_Mutation p.P187T 0.24 tolerated(0.15) benign(0.06) TCGA-VQ-A91D-01 3 44943082 44943083 - C TGM4 Frame_Shift_Ins p.Y244Ifs*67 0.22 TCGA-VQ-A91D-01 3 46008239 46008239 C T FYCO1 Missense_Mutation p.A863T 0.24 tolerated(0.09) benign(0.043) TCGA-VQ-A91D-01 3 47043986 47043986 C T NBEAL2 Silent p.R1759R 0.24 TCGA-VQ-A91D-01 3 47049828 47049828 G A NBEAL2 Missense_Mutation p.R2592Q 0.28 tolerated(0.08) benign(0.01) TCGA-VQ-A91D-01 3 48613837 48613838 - C COL7A1 Frame_Shift_Ins p.E1923Gfs*43 0.28 TCGA-VQ-A91D-01 3 48637522 48637522 G - UQCRC1 Frame_Shift_Del p.L426Wfs*89 0.31 TCGA-VQ-A91D-01 3 48658429 48658429 G A TMEM89 Missense_Mutation p.P109L 0.29 tolerated_low_confidence(0.24) benign(0.011) TCGA-VQ-A91D-01 3 48678913 48678913 C - CELSR3 Frame_Shift_Del p.E2957Sfs*36 0.39 TCGA-VQ-A91D-01 3 48696600 48696600 G A CELSR3 Silent p.H1156H 0.29 TCGA-VQ-A91D-01 3 49052346 49052346 C T WDR6 Silent p.L1027L 0.35 TCGA-VQ-A91D-01 3 49690191 49690191 C T BSN Missense_Mutation p.R1068C 0.36 unknown(0) TCGA-VQ-A91D-01 3 49714396 49714396 G A APEH Missense_Mutation p.R313H 0.30 tolerated(0.12) benign(0.02) TCGA-VQ-A91D-01 3 49723544 49723544 C T MST1 Silent p.A366A 0.43 TCGA-VQ-A91D-01 3 49739834 49739834 G A RNF123 Missense_Mutation p.R542Q 0.33 deleterious(0.05) probably_damaging(0.996) TCGA-VQ-A91D-01 3 50225371 50225371 C A SEMA3F Nonsense_Mutation p.Y727* 0.29 TCGA-VQ-A91D-01 3 50326308 50326308 C T IFRD2 Missense_Mutation p.D380N 0.27 deleterious(0.03) probably_damaging(0.997) TCGA-VQ-A91D-01 3 50339577 50339577 G A HYAL1 Missense_Mutation p.R271C 0.16 deleterious(0) probably_damaging(0.99) TCGA-VQ-A91D-01 3 50355717 50355717 T C HYAL2 Missense_Mutation p.Q422R 0.40 tolerated(1) benign(0.002) TCGA-VQ-A91D-01 3 50617879 50617879 C T HEMK1 3'UTR 0.37 TCGA-VQ-A91D-01 3 51411972 51411972 G A DOCK3 Missense_Mutation p.R1789H 0.24 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-VQ-A91D-01 3 51969252 51969252 A G RRP9 Missense_Mutation p.L332P 0.32 deleterious(0) probably_damaging(0.996) TCGA-VQ-A91D-01 3 51981818 51981818 G T PARP3 Missense_Mutation p.G454C 0.21 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 3 52265999 52265999 G A TWF2 Silent p.F81F 0.32 TCGA-VQ-A91D-01 3 52328245 52328245 G A GLYCTK 3'Flank 0.32 TCGA-VQ-A91D-01 3 52409345 52409345 C T DNAH1 Missense_Mutation p.R2359C 0.32 probably_damaging(1) TCGA-VQ-A91D-01 3 52425234 52425234 C T DNAH1 Missense_Mutation p.R3261C 0.12 probably_damaging(0.959) TCGA-VQ-A91D-01 3 52438517 52438517 T C BAP1 Missense_Mutation p.Y401C 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.599) TCGA-VQ-A91D-01 3 53699738 53699738 A C CACNA1D Missense_Mutation p.H273P 0.22 deleterious(0) probably_damaging(0.998) TCGA-VQ-A91D-01 3 53855767 53855767 C T CHDH Missense_Mutation p.A298T 0.34 deleterious(0.02) possibly_damaging(0.589) TCGA-VQ-A91D-01 3 53919550 53919550 C T SELK 3'UTR 0.23 TCGA-VQ-A91D-01 3 56330134 56330134 C T ERC2 Silent p.T329T 0.25 TCGA-VQ-A91D-01 3 56766292 56766292 C T ARHGEF3 Missense_Mutation p.R433Q 0.36 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 3 57132181 57132181 C T IL17RD Missense_Mutation p.G517D 0.42 deleterious(0.05) benign(0.027) TCGA-VQ-A91D-01 3 61734639 61734639 C T PTPRG Missense_Mutation p.P58L 0.31 tolerated(0.3) benign(0.144) TCGA-VQ-A91D-01 3 62278128 62278128 C T PTPRG Missense_Mutation p.A1363V 0.07 tolerated(0.09) possibly_damaging(0.795) TCGA-VQ-A91D-01 3 63973838 63973838 G A ATXN7 Missense_Mutation p.R400H 0.37 tolerated(0.17) probably_damaging(0.997) TCGA-VQ-A91D-01 3 64138879 64138879 C T PRICKLE2 Missense_Mutation p.D256N 0.13 deleterious(0) benign(0.18) TCGA-VQ-A91D-01 3 64644269 64644269 C T ADAMTS9 Missense_Mutation p.R293Q 0.27 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91D-01 3 65342442 65342442 C T MAGI1 Missense_Mutation p.D1334N 0.35 tolerated_low_confidence(0.24) possibly_damaging(0.713) TCGA-VQ-A91D-01 3 65367655 65367655 C T MAGI1 Silent p.T866T 0.35 TCGA-VQ-A91D-01 3 67053665 67053665 C T KBTBD8 Nonsense_Mutation p.R92* 0.31 TCGA-VQ-A91D-01 3 6903244 6903244 G A GRM7 Missense_Mutation p.V57M 0.30 tolerated(0.08) probably_damaging(0.994) TCGA-VQ-A91D-01 3 69120703 69120703 A G UBA3 Silent p.N110N 0.31 TCGA-VQ-A91D-01 3 69127018 69127018 C T UBA3 Nonsense_Mutation p.W38* 0.31 TCGA-VQ-A91D-01 3 71027161 71027161 A G FOXP1 Missense_Mutation p.V391A 0.11 tolerated(0.39) benign(0.015) TCGA-VQ-A91D-01 3 73450091 73450091 C A PDZRN3 Missense_Mutation p.R412S 0.10 deleterious(0.04) possibly_damaging(0.588) TCGA-VQ-A91D-01 3 74418369 74418369 T - CNTN3 Frame_Shift_Del p.N306Mfs*19 0.28 TCGA-VQ-A91D-01 3 7503372 7503372 G A GRM7 Missense_Mutation p.R493H 0.27 tolerated(0.07) benign(0.001) TCGA-VQ-A91D-01 3 75472062 75472062 C A FAM86DP RNA 0.35 TCGA-VQ-A91D-01 3 7721860 7721860 G A GRM7 Missense_Mutation p.R859Q 0.31 deleterious(0.01) probably_damaging(0.978) TCGA-VQ-A91D-01 3 7721939 7721939 C T GRM7 Silent p.N885N 0.38 TCGA-VQ-A91D-01 3 8579121 8579121 A - LMCD1 Frame_Shift_Del p.K128Nfs*17 0.24 TCGA-VQ-A91D-01 3 8983407 8983407 T A RAD18 Silent p.V116V 0.31 TCGA-VQ-A91D-01 3 96533492 96533492 G A EPHA6 Missense_Mutation p.A9T 0.29 tolerated_low_confidence(0.33) unknown(0) TCGA-VQ-A91D-01 3 98073062 98073062 G A OR5K4 Missense_Mutation p.R122H 0.33 deleterious(0.01) benign(0.41) TCGA-VQ-A91D-01 3 9971756 9971756 C T IL17RC Nonsense_Mutation p.R472* 0.17 TCGA-VQ-A91D-01 4 100062706 100062706 G A ADH4 Missense_Mutation p.T83I 0.37 deleterious(0.01) possibly_damaging(0.796) TCGA-VQ-A91D-01 4 1018329 1018329 G T FGFRL1 Missense_Mutation p.G317C 0.27 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 4 103522157 103522157 T C NFKB1 Silent p.D581D 0.09 TCGA-VQ-A91D-01 4 103947654 103947654 A - SLC9B2 Frame_Shift_Del p.L496Cfs*50 0.25 TCGA-VQ-A91D-01 4 106158108 106158109 - A TET2 Frame_Shift_Ins p.V1006Gfs*3 0.23 TCGA-VQ-A91D-01 4 109546367 109546367 A - RPL34 Frame_Shift_Del 0.33 TCGA-VQ-A91D-01 4 110603742 110603742 A C CCDC109B Missense_Mutation p.K152N 0.13 tolerated(0.24) benign(0.014) TCGA-VQ-A91D-01 4 110615741 110615741 G A CASP6 Silent p.G141G 0.29 TCGA-VQ-A91D-01 4 111026728 111026728 T C ELOVL6 Missense_Mutation p.H49R 0.38 tolerated(0.09) benign(0.004) TCGA-VQ-A91D-01 4 11401088 11401088 T C HS3ST1 Missense_Mutation p.D181G 0.32 tolerated(0.14) benign(0.001) TCGA-VQ-A91D-01 4 122075764 122075764 T - TNIP3 Frame_Shift_Del p.N222Ifs*15 0.28 TCGA-VQ-A91D-01 4 122078400 122078400 T C TNIP3 Splice_Site p.X149_splice 0.27 TCGA-VQ-A91D-01 4 122853648 122853648 C A TRPC3 Missense_Mutation p.K255N 0.33 deleterious(0) probably_damaging(0.949) TCGA-VQ-A91D-01 4 123107218 123107218 T C KIAA1109 Missense_Mutation p.I129T 0.29 benign(0.155) TCGA-VQ-A91D-01 4 1231989 1231989 C T CTBP1 Silent p.T59T 0.34 TCGA-VQ-A91D-01 4 123301355 123301355 A G ADAD1 Missense_Mutation p.Y44C 0.15 tolerated(0.18) benign(0.001) TCGA-VQ-A91D-01 4 1244546 1244546 A G CTBP1 5'Flank 0.29 TCGA-VQ-A91D-01 4 126336479 126336479 A G FAT4 Missense_Mutation p.T2121A 0.36 benign(0.078) TCGA-VQ-A91D-01 4 128861055 128861055 G A MFSD8 Silent p.S217S 0.10 TCGA-VQ-A91D-01 4 129913327 129913327 T - SCLT1 Frame_Shift_Del p.K227Nfs*7 0.26 TCGA-VQ-A91D-01 4 134071465 134071465 C A PCDH10 Missense_Mutation p.P57H 0.29 deleterious(0.01) possibly_damaging(0.834) TCGA-VQ-A91D-01 4 134072280 134072281 - A PCDH10 Frame_Shift_Ins p.A330Sfs*23 0.20 TCGA-VQ-A91D-01 4 134073237 134073237 C T PCDH10 Missense_Mutation p.R648C 0.23 deleterious(0.03) probably_damaging(0.999) TCGA-VQ-A91D-01 4 140291444 140291445 - A NAA15 Frame_Shift_Ins p.N614Kfs*17 0.48 TCGA-VQ-A91D-01 4 140297612 140297612 A G NAA15 Missense_Mutation p.I681V 0.28 tolerated(0.43) possibly_damaging(0.498) TCGA-VQ-A91D-01 4 140625237 140625237 G A MGST2 Missense_Mutation p.A127T 0.36 tolerated(0.27) benign(0.004) TCGA-VQ-A91D-01 4 146038526 146038526 C T ABCE1 Silent p.S294S 0.25 TCGA-VQ-A91D-01 4 146080580 146080581 TA G OTUD4 Intron 0.38 TCGA-VQ-A91D-01 4 15067858 15067858 T - CPEB2 Frame_Shift_Del p.C989Vfs*31 0.27 TCGA-VQ-A91D-01 4 151520174 151520174 T - LRBA Frame_Shift_Del p.T2011Qfs*11 0.30 TCGA-VQ-A91D-01 4 153244136 153244136 C T FBXW7 Missense_Mutation p.R674Q 0.39 tolerated(0.42) probably_damaging(0.99) TCGA-VQ-A91D-01 4 154217169 154217169 C T TRIM2 Silent p.D497D 0.35 TCGA-VQ-A91D-01 4 155254578 155254578 G A DCHS2 Missense_Mutation p.R429W 0.37 tolerated(0.19) benign(0) TCGA-VQ-A91D-01 4 15601196 15601196 G A CC2D2A Missense_Mutation p.R1514H 0.21 tolerated(0.06) benign(0.062) TCGA-VQ-A91D-01 4 156618040 156618040 G T GUCY1A3 Missense_Mutation p.K7N 0.10 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-VQ-A91D-01 4 156721163 156721163 T C GUCY1B3 Missense_Mutation p.I371T 0.26 tolerated(0.2) benign(0.3) TCGA-VQ-A91D-01 4 158281161 158281161 G C GRIA2 Silent p.G719G 0.33 TCGA-VQ-A91D-01 4 1656736 1656736 C T FAM53A Missense_Mutation p.R284H 0.27 deleterious(0) probably_damaging(0.996) TCGA-VQ-A91D-01 4 1656925 1656925 C T FAM53A Missense_Mutation p.R221H 0.44 deleterious(0) possibly_damaging(0.815) TCGA-VQ-A91D-01 4 166987000 166987000 G T TLL1 Missense_Mutation p.A725S 0.27 deleterious(0.02) probably_damaging(0.988) TCGA-VQ-A91D-01 4 169143008 169143008 T C DDX60 Missense_Mutation p.N1617D 0.24 tolerated(0.31) benign(0.005) TCGA-VQ-A91D-01 4 170428203 170428203 T - NEK1 Frame_Shift_Del p.V665Cfs*34 0.33 TCGA-VQ-A91D-01 4 170523824 170523824 A - NEK1 5'UTR 0.23 TCGA-VQ-A91D-01 4 170618482 170618482 T - CLCN3 Frame_Shift_Del p.F388Lfs*9 0.25 TCGA-VQ-A91D-01 4 170625193 170625193 C T CLCN3 Silent p.I536I 0.30 TCGA-VQ-A91D-01 4 173730612 173730612 G - GALNTL6 Frame_Shift_Del p.A220Hfs*9 0.24 TCGA-VQ-A91D-01 4 1807568 1807568 C T FGFR3 Silent p.F581F 0.35 TCGA-VQ-A91D-01 4 183721065 183721065 C T TENM3 Missense_Mutation p.T2554M 0.47 tolerated(0.26) benign(0.028) TCGA-VQ-A91D-01 4 1838166 1838166 T C LETM1 Missense_Mutation p.Q243R 0.38 tolerated(0.23) benign(0.071) TCGA-VQ-A91D-01 4 184572266 184572266 C A RWDD4 Missense_Mutation p.Q78H 0.24 tolerated(0.07) benign(0.026) TCGA-VQ-A91D-01 4 186536075 186536075 T C SORBS2 Silent p.P1031P 0.25 TCGA-VQ-A91D-01 4 187524616 187524616 A G FAT1 Silent p.P3688P 0.22 TCGA-VQ-A91D-01 4 187532709 187532710 - G FAT1 Frame_Shift_Ins p.V3229Cfs*3 0.32 TCGA-VQ-A91D-01 4 187628840 187628840 C T FAT1 Silent p.P714P 0.31 TCGA-VQ-A91D-01 4 188924613 188924613 G A ZFP42 Missense_Mutation p.V218I 0.24 tolerated(0.09) benign(0.002) TCGA-VQ-A91D-01 4 190876308 190876308 T C FRG1 Splice_Site p.X144_splice 0.05 TCGA-VQ-A91D-01 4 2306227 2306229 GCG CA ZFYVE28 Frame_Shift_Del p.A613Vfs*137 0.22 TCGA-VQ-A91D-01 4 2307058 2307058 A G ZFYVE28 Missense_Mutation p.Y337H 0.30 deleterious_low_confidence(0) probably_damaging(0.91) TCGA-VQ-A91D-01 4 25278792 25278792 T - PI4K2B Frame_Shift_Del p.S479Pfs*40 0.27 TCGA-VQ-A91D-01 4 2964971 2964971 T A NOP14 Nonsense_Mutation p.K26* 0.39 TCGA-VQ-A91D-01 4 30725052 30725052 C T PCDH7 Missense_Mutation p.R670W 0.09 deleterious(0) possibly_damaging(0.827) TCGA-VQ-A91D-01 4 30725231 30725231 G A PCDH7 Silent p.S729S 0.07 TCGA-VQ-A91D-01 4 30921838 30921838 C T PCDH7 Nonsense_Mutation p.Q1080* 0.25 TCGA-VQ-A91D-01 4 30921901 30921901 C T PCDH7 Missense_Mutation p.P1101S 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A91D-01 4 3213674 3213674 C T HTT Silent p.L2145L 0.39 TCGA-VQ-A91D-01 4 3227472 3227472 T C HTT Splice_Site p.X2616_splice 0.27 TCGA-VQ-A91D-01 4 3237456 3237456 G A HTT Silent p.P2912P 0.34 TCGA-VQ-A91D-01 4 3443820 3443820 G A HGFAC Missense_Mutation p.R31Q 0.35 tolerated_low_confidence(0.43) benign(0.001) TCGA-VQ-A91D-01 4 3768705 3768705 C T ADRA2C Silent p.C124C 0.43 TCGA-VQ-A91D-01 4 38046110 38046110 G A TBC1D1 Missense_Mutation p.R514Q 0.26 deleterious(0.02) probably_damaging(0.973) TCGA-VQ-A91D-01 4 38055911 38055911 C T TBC1D1 Nonsense_Mutation p.R668* 0.38 TCGA-VQ-A91D-01 4 38690460 38690460 A - KLF3 Frame_Shift_Del p.K106Nfs*21 0.29 TCGA-VQ-A91D-01 4 38691451 38691451 T C KLF3 Missense_Mutation p.S216P 0.32 tolerated(0.28) benign(0.041) TCGA-VQ-A91D-01 4 38774956 38774956 T - TLR10 Frame_Shift_Del p.A753Hfs*28 0.38 TCGA-VQ-A91D-01 4 39083727 39083727 C T KLHL5 Missense_Mutation p.A329V 0.32 deleterious(0.02) probably_damaging(0.999) TCGA-VQ-A91D-01 4 39523008 39523008 A T UGDH Missense_Mutation p.I42N 0.14 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 4 39929746 39929746 T C PDS5A Silent p.S59S 0.21 TCGA-VQ-A91D-01 4 40428014 40428014 G A RBM47 Silent p.A563A 0.25 TCGA-VQ-A91D-01 4 41258903 41258903 G A UCHL1 5'UTR 0.36 TCGA-VQ-A91D-01 4 41621353 41621353 G A LIMCH1 Silent p.T277T 0.36 TCGA-VQ-A91D-01 4 41984450 41984450 C T DCAF4L1 Missense_Mutation p.A214V 0.34 tolerated(1) benign(0.001) TCGA-VQ-A91D-01 4 4304587 4304587 A G ZBTB49 Missense_Mutation p.K342E 0.12 tolerated(1) benign(0) TCGA-VQ-A91D-01 4 436484 436484 C T ZNF721 Missense_Mutation p.G591D 0.34 deleterious(0.04) possibly_damaging(0.864) TCGA-VQ-A91D-01 4 44696446 44696446 C T GUF1 Missense_Mutation p.A544V 0.25 tolerated(0.27) probably_damaging(0.975) TCGA-VQ-A91D-01 4 4543587 4543587 C T STX18 Silent p.R35R 0.28 TCGA-VQ-A91D-01 4 46930380 46930380 T C GABRA4 Silent p.P509P 0.27 TCGA-VQ-A91D-01 4 47939172 47939172 T - CNGA1 Frame_Shift_Del p.T516Qfs*8 0.30 TCGA-VQ-A91D-01 4 4864476 4864476 G A MSX1 Missense_Mutation p.R173H 0.33 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91D-01 4 55130995 55130995 T G PDGFRA Intron 0.43 TCGA-VQ-A91D-01 4 5693030 5693030 T C EVC2 Missense_Mutation p.T161A 0.20 tolerated(0.3) benign(0.01) TCGA-VQ-A91D-01 4 57250496 57250496 T C AASDH 5'UTR 0.12 TCGA-VQ-A91D-01 4 57785986 57785986 A G REST Missense_Mutation p.Y311C 0.25 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 4 57840119 57840119 T C NOA1 Missense_Mutation p.Q405R 0.38 tolerated(0.14) benign(0.004) TCGA-VQ-A91D-01 4 57843461 57843461 C G NOA1 Missense_Mutation p.Q97H 0.10 deleterious(0.03) benign(0.135) TCGA-VQ-A91D-01 4 57889686 57889686 C T POLR2B Silent p.G902G 0.25 TCGA-VQ-A91D-01 4 5830412 5830412 A C EVC 3'UTR 0.26 TCGA-VQ-A91D-01 4 6303445 6303445 G A WFS1 Silent p.T641T 0.36 TCGA-VQ-A91D-01 4 647681 647681 C T PDE6B Missense_Mutation p.T251M 0.31 deleterious(0) probably_damaging(0.996) TCGA-VQ-A91D-01 4 66467590 66467590 G A EPHA5 Missense_Mutation p.R227C 0.25 deleterious(0) probably_damaging(0.997) TCGA-VQ-A91D-01 4 69433562 69433562 T - UGT2B17 Frame_Shift_Del p.N214Ifs*2 0.23 TCGA-VQ-A91D-01 4 69962298 69962298 T A UGT2B7 Silent p.S20S 0.28 TCGA-VQ-A91D-01 4 71201612 71201612 C A CABS1 Missense_Mutation p.L286I 0.25 deleterious(0.04) benign(0.094) TCGA-VQ-A91D-01 4 71346849 71346849 A G MUC7 Missense_Mutation p.T130A 0.27 deleterious(0.01) benign(0.169) TCGA-VQ-A91D-01 4 71495212 71495212 A - ENAM 5'UTR p.M1? 0.33 TCGA-VQ-A91D-01 4 73923928 73923928 C T COX18 Missense_Mutation p.R302H 0.10 tolerated(0.09) possibly_damaging(0.616) TCGA-VQ-A91D-01 4 74319542 74319542 C T AFP Silent p.V571V 0.27 TCGA-VQ-A91D-01 4 76447117 76447117 A T THAP6 Intron 0.27 TCGA-VQ-A91D-01 4 76532424 76532424 A G CDKL2 Missense_Mutation p.V162A 0.27 deleterious(0) benign(0.191) TCGA-VQ-A91D-01 4 77661897 77661897 G T SHROOM3 Missense_Mutation p.E857D 0.11 tolerated(0.17) benign(0.003) TCGA-VQ-A91D-01 4 78652648 78652648 G A CNOT6L Missense_Mutation p.A306V 0.23 deleterious(0.01) probably_damaging(1) TCGA-VQ-A91D-01 4 79403024 79403024 C T FRAS1 Missense_Mutation p.A2837V 0.41 possibly_damaging(0.878) TCGA-VQ-A91D-01 4 79833075 79833075 C T BMP2K Missense_Mutation p.A1125V 0.38 deleterious_low_confidence(0) unknown(0) TCGA-VQ-A91D-01 4 80247021 80247021 C T NAA11 Missense_Mutation p.R4H 0.14 tolerated(0.06) possibly_damaging(0.57) TCGA-VQ-A91D-01 4 80329142 80329142 C T GK2 Silent p.T71T 0.37 TCGA-VQ-A91D-01 4 8098948 8098948 C T ABLIM2 Silent p.T72T 0.27 TCGA-VQ-A91D-01 4 8211461 8211461 C A SH3TC1 Intron 0.42 TCGA-VQ-A91D-01 4 82126123 82126123 G A PRKG2 Missense_Mutation p.R27W 0.27 deleterious(0) possibly_damaging(0.556) TCGA-VQ-A91D-01 4 8229023 8229023 C T SH3TC1 Silent p.S534S 0.36 TCGA-VQ-A91D-01 4 83552573 83552573 G A SCD5 Silent p.F300F 0.37 TCGA-VQ-A91D-01 4 85911 85911 C A Z95704.2 RNA 0.31 TCGA-VQ-A91D-01 4 89312019 89312019 C T HERC6 Missense_Mutation p.R218C 0.30 deleterious(0.02) possibly_damaging(0.892) TCGA-VQ-A91D-01 4 89356979 89356979 A - HERC6 Frame_Shift_Del p.K786Nfs*12 0.24 TCGA-VQ-A91D-01 4 89618386 89618386 C T NAP1L5 Missense_Mutation p.A174T 0.29 tolerated_low_confidence(0.11) unknown(0) TCGA-VQ-A91D-01 4 89668805 89668805 T C FAM13A Missense_Mutation p.S787G 0.07 tolerated(0.38) benign(0.044) TCGA-VQ-A91D-01 4 90743484 90743484 A G SNCA Silent p.G73G 0.45 TCGA-VQ-A91D-01 4 945453 945453 G T TMEM175 Intron 0.06 TCGA-VQ-A91D-01 5 102201821 102201821 G C PAM 5'UTR 0.32 TCGA-VQ-A91D-01 5 102309949 102309949 A - PAM Frame_Shift_Del p.K433Rfs*32 0.25 TCGA-VQ-A91D-01 5 102537308 102537309 - A PPIP5K2 Frame_Shift_Ins p.N1217Kfs*10 0.30 TCGA-VQ-A91D-01 5 106763177 106763177 A G EFNA5 Silent p.C53C 0.11 TCGA-VQ-A91D-01 5 107197501 107197501 C T FBXL17 Missense_Mutation p.V676I 0.29 tolerated(0.06) benign(0.153) TCGA-VQ-A91D-01 5 1074697 1074698 - G SLC12A7 Frame_Shift_Ins p.H686Pfs*230 0.37 TCGA-VQ-A91D-01 5 108290522 108290522 A - FER Frame_Shift_Del p.K476Nfs*53 0.30 TCGA-VQ-A91D-01 5 108523322 108523322 C T FER 3'UTR 0.21 TCGA-VQ-A91D-01 5 110456700 110456700 A G WDR36 Missense_Mutation p.E726G 0.35 tolerated(0.1) benign(0.019) TCGA-VQ-A91D-01 5 112389448 112389448 G A MCC Missense_Mutation p.L808F 0.36 deleterious(0) probably_damaging(0.994) TCGA-VQ-A91D-01 5 112437494 112437494 T C MCC Missense_Mutation p.N447S 0.06 tolerated(0.29) benign(0.225) TCGA-VQ-A91D-01 5 113822813 113822813 A - KCNN2 Frame_Shift_Del p.K442Rfs*2 0.25 TCGA-VQ-A91D-01 5 11384948 11384948 T G CTNND2 Missense_Mutation p.T336P 0.40 tolerated(0.28) benign(0.009) TCGA-VQ-A91D-01 5 115783304 115783304 T A SEMA6A Missense_Mutation p.S700C 0.08 tolerated(0.11) possibly_damaging(0.572) TCGA-VQ-A91D-01 5 121758603 121758603 T C SNCAIP Silent p.I57I 0.26 TCGA-VQ-A91D-01 5 121761130 121761130 C T SNCAIP Silent p.H362H 0.23 TCGA-VQ-A91D-01 5 129241170 129241170 G A CHSY3 Silent p.Q216Q 0.10 TCGA-VQ-A91D-01 5 132545894 132545894 G A FSTL4 Missense_Mutation p.P569S 0.29 deleterious(0.04) benign(0.057) TCGA-VQ-A91D-01 5 132652215 132652215 T A FSTL4 Missense_Mutation p.E180V 0.11 deleterious(0.04) possibly_damaging(0.735) TCGA-VQ-A91D-01 5 133634314 133634314 T - CDKL3 3'UTR 0.24 TCGA-VQ-A91D-01 5 134364489 134364489 C T PITX1 Missense_Mutation p.A309T 0.43 deleterious(0.01) possibly_damaging(0.614) TCGA-VQ-A91D-01 5 134696244 134696244 G A H2AFY Silent p.G177G 0.14 TCGA-VQ-A91D-01 5 13716691 13716691 A G DNAH5 Missense_Mutation p.F4272L 0.31 benign(0.418) TCGA-VQ-A91D-01 5 137523059 137523059 G A KIF20A Missense_Mutation p.R877H 0.22 tolerated(0.17) benign(0.002) TCGA-VQ-A91D-01 5 137681261 137681261 G A FAM53C Missense_Mutation p.R295H 0.33 tolerated(0.11) probably_damaging(0.923) TCGA-VQ-A91D-01 5 137722304 137722304 G A KDM3B Silent p.S458S 0.24 TCGA-VQ-A91D-01 5 138119053 138119053 G A CTNNA1 Missense_Mutation p.R98Q 0.30 tolerated(0.22) benign(0.031) TCGA-VQ-A91D-01 5 138266196 138266196 C T CTNNA1 Missense_Mutation p.A682V 0.28 tolerated(0.25) possibly_damaging(0.66) TCGA-VQ-A91D-01 5 138643022 138643022 T G MATR3 5'UTR 0.50 TCGA-VQ-A91D-01 5 139680072 139680072 A G PFDN1 Silent p.H43H 0.24 TCGA-VQ-A91D-01 5 139740447 139740447 C - SLC4A9 Frame_Shift_Del p.H120Tfs*38 0.18 TCGA-VQ-A91D-01 5 139936785 139936785 C T SRA1 Missense_Mutation p.R45K 0.07 tolerated(1) benign(0) TCGA-VQ-A91D-01 5 140054707 140054709 CTC - HARS In_Frame_Del p.E402del 0.38 TCGA-VQ-A91D-01 5 140077650 140077650 C T HARS2 Missense_Mutation p.A483V 0.15 tolerated(0.29) benign(0.024) TCGA-VQ-A91D-01 5 140168036 140168036 C A PCDHA1 Missense_Mutation p.L721M 0.44 deleterious_low_confidence(0) possibly_damaging(0.628) TCGA-VQ-A91D-01 5 140187221 140187221 C A PCDHA4 Missense_Mutation p.S150Y 0.27 deleterious_low_confidence(0) benign(0.257) TCGA-VQ-A91D-01 5 140187323 140187323 C T PCDHA4 Missense_Mutation p.P184L 0.47 deleterious_low_confidence(0.02) benign(0.005) TCGA-VQ-A91D-01 5 140207779 140207779 G A PCDHA6 Missense_Mutation p.V35I 0.34 tolerated_low_confidence(0.15) benign(0.276) TCGA-VQ-A91D-01 5 140215374 140215374 C T PCDHA7 Missense_Mutation p.P469L 0.29 deleterious_low_confidence(0.01) benign(0.302) TCGA-VQ-A91D-01 5 140215781 140215781 G A PCDHA7 Missense_Mutation p.A605T 0.32 deleterious_low_confidence(0.02) probably_damaging(0.915) TCGA-VQ-A91D-01 5 140222458 140222458 T C PCDHA8 Missense_Mutation p.Y518H 0.23 deleterious_low_confidence(0.03) benign(0.144) TCGA-VQ-A91D-01 5 140223084 140223084 G A PCDHA8 Silent p.L726L 0.32 TCGA-VQ-A91D-01 5 140228507 140228507 G A PCDHA9 Missense_Mutation p.A143T 0.32 tolerated_low_confidence(0.17) benign(0.271) TCGA-VQ-A91D-01 5 140229700 140229700 G A PCDHA9 Silent p.A540A 0.32 TCGA-VQ-A91D-01 5 140237187 140237187 G A PCDHA10 Silent p.A518A 0.29 TCGA-VQ-A91D-01 5 140242596 140242596 C T AC005609.1 Missense_Mutation p.R127H 0.32 tolerated_low_confidence(0.08) possibly_damaging(0.715) TCGA-VQ-A91D-01 5 140255609 140255609 A - PCDHA12 Frame_Shift_Del p.D187Ifs*8 0.26 TCGA-VQ-A91D-01 5 140263835 140263835 C T PCDHA13 Missense_Mutation p.A661V 0.09 deleterious_low_confidence(0.03) benign(0.279) TCGA-VQ-A91D-01 5 140474985 140474985 G A PCDHB2 Missense_Mutation p.R204H 0.30 tolerated_low_confidence(0.06) benign(0.077) TCGA-VQ-A91D-01 5 140553098 140553098 G A PCDHB7 Missense_Mutation p.V228M 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.586) TCGA-VQ-A91D-01 5 140554289 140554289 C T PCDHB7 Missense_Mutation p.R625C 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.786) TCGA-VQ-A91D-01 5 140559299 140559299 G A PCDHB8 Missense_Mutation p.V562M 0.26 deleterious_low_confidence(0) probably_damaging(0.93) TCGA-VQ-A91D-01 5 140615593 140615593 G A PCDHB18 RNA 0.36 TCGA-VQ-A91D-01 5 140627572 140627572 T - PCDHB15 3'UTR 0.52 TCGA-VQ-A91D-01 5 140720872 140720872 G A PCDHGA2 Silent p.T778T 0.23 TCGA-VQ-A91D-01 5 140731872 140731872 C T PCDHGB1 Missense_Mutation p.T682M 0.29 deleterious(0) benign(0.443) TCGA-VQ-A91D-01 5 140735292 140735292 C T PCDHGA4 Silent p.N175N 0.26 TCGA-VQ-A91D-01 5 140741235 140741235 C T PCDHGB2 Silent p.S511S 0.37 TCGA-VQ-A91D-01 5 140746055 140746055 C T PCDHGA5 Missense_Mutation p.H720Y 0.27 tolerated_low_confidence(0.06) benign(0.049) TCGA-VQ-A91D-01 5 140751156 140751156 A G PCDHGB3 Missense_Mutation p.K399E 0.34 tolerated(0.23) benign(0.13) TCGA-VQ-A91D-01 5 140783153 140783153 C A PCDHGA9 Missense_Mutation p.L212I 0.39 deleterious_low_confidence(0) possibly_damaging(0.907) TCGA-VQ-A91D-01 5 140789184 140789184 C T PCDHGB6 Missense_Mutation p.A472V 0.23 tolerated(0.5) possibly_damaging(0.473) TCGA-VQ-A91D-01 5 140812552 140812552 C T PCDHGA12 Silent p.G742G 0.10 TCGA-VQ-A91D-01 5 141023915 141023915 C T FCHSD1 Missense_Mutation p.R578Q 0.34 deleterious(0.02) benign(0.248) TCGA-VQ-A91D-01 5 141026156 141026156 C - FCHSD1 Intron 0.32 TCGA-VQ-A91D-01 5 141236828 141236828 T C PCDH1 Missense_Mutation p.H1103R 0.15 deleterious(0.03) probably_damaging(0.99) TCGA-VQ-A91D-01 5 14406021 14406021 C T TRIO Missense_Mutation p.T1594M 0.24 possibly_damaging(0.711) TCGA-VQ-A91D-01 5 14462977 14462977 G A TRIO Silent p.P1870P 0.26 TCGA-VQ-A91D-01 5 14477004 14477004 T - TRIO Frame_Shift_Del p.L2031* 0.41 TCGA-VQ-A91D-01 5 144953 144953 G A PLEKHG4B Missense_Mutation p.R252Q 0.51 tolerated(0.4) benign(0.41) TCGA-VQ-A91D-01 5 14508036 14508036 A C TRIO Missense_Mutation p.K2933N 0.37 unknown(0) TCGA-VQ-A91D-01 5 145175925 145175925 A C PRELID2 Intron 0.42 TCGA-VQ-A91D-01 5 145895604 145895604 C T GPR151 Missense_Mutation p.G25R 0.13 deleterious(0) probably_damaging(0.992) TCGA-VQ-A91D-01 5 147029977 147029977 G T JAKMIP2 Missense_Mutation p.A254D 0.25 deleterious(0) benign(0.431) TCGA-VQ-A91D-01 5 147513364 147513364 C T SPINK5 Missense_Mutation p.R1064C 0.29 deleterious(0) benign(0.071) TCGA-VQ-A91D-01 5 148207708 148207708 T A ADRB2 3'UTR 0.42 TCGA-VQ-A91D-01 5 14871520 14871520 G A ANKH Silent p.L13L 0.16 TCGA-VQ-A91D-01 5 148747943 148747943 G A PCYOX1L Missense_Mutation p.R404Q 0.29 tolerated(0.12) possibly_damaging(0.71) TCGA-VQ-A91D-01 5 149006701 149006701 G A ARHGEF37 Silent p.K509K 0.28 TCGA-VQ-A91D-01 5 149206386 149206386 C - PPARGC1B Frame_Shift_Del p.S137Afs*69 0.25 TCGA-VQ-A91D-01 5 149216170 149216170 C T PPARGC1B Missense_Mutation p.H718Y 0.42 deleterious(0.05) possibly_damaging(0.548) TCGA-VQ-A91D-01 5 149375258 149375258 G T TIGD6 Silent p.A218A 0.10 TCGA-VQ-A91D-01 5 149513546 149513546 G A PDGFRB Silent p.N219N 0.32 TCGA-VQ-A91D-01 5 149516589 149516589 G A PDGFRB Missense_Mutation p.P8S 0.41 deleterious(0.04) benign(0.002) TCGA-VQ-A91D-01 5 150072556 150072558 CTT - RBM22 In_Frame_Del p.E344del 0.22 TCGA-VQ-A91D-01 5 150908914 150908914 C T FAT2 Missense_Mutation p.S3284N 0.29 benign(0.042) TCGA-VQ-A91D-01 5 150948362 150948362 T G FAT2 Missense_Mutation p.E44A 0.37 probably_damaging(0.998) TCGA-VQ-A91D-01 5 152870462 152870462 T G GRIA1 5'Flank 0.06 TCGA-VQ-A91D-01 5 153409129 153409129 C T FAM114A2 Missense_Mutation p.A139T 0.15 tolerated(0.23) benign(0.02) TCGA-VQ-A91D-01 5 153789304 153789304 G A GALNT10 Silent p.P456P 0.31 TCGA-VQ-A91D-01 5 153835520 153835520 A G SAP30L Missense_Mutation p.I162V 0.40 tolerated(0.11) possibly_damaging(0.669) TCGA-VQ-A91D-01 5 156731361 156731362 AT - CYFIP2 Frame_Shift_Del p.M236Afs*18 0.25 TCGA-VQ-A91D-01 5 156769849 156769849 C T FNDC9 3'UTR 0.32 TCGA-VQ-A91D-01 5 15928326 15928326 G A FBXL7 Missense_Mutation p.R152Q 0.32 tolerated(0.59) probably_damaging(0.988) TCGA-VQ-A91D-01 5 159398909 159398909 C - ADRA1B Frame_Shift_Del p.D327Tfs*88 0.36 TCGA-VQ-A91D-01 5 159776094 159776094 C A C1QTNF2 3'UTR 0.38 TCGA-VQ-A91D-01 5 159854837 159854837 C - PTTG1 Frame_Shift_Del p.P164Lfs*4 0.09 TCGA-VQ-A91D-01 5 161524705 161524705 G A GABRG2 Missense_Mutation p.S130N 0.26 tolerated(0.26) probably_damaging(0.995) TCGA-VQ-A91D-01 5 16572168 16572168 C T FAM134B Missense_Mutation p.V122I 0.29 tolerated(0.52) benign(0.019) TCGA-VQ-A91D-01 5 167798486 167798486 G A WWC1 Nonsense_Mutation p.W59* 0.32 TCGA-VQ-A91D-01 5 168093668 168093668 G A SLIT3 Nonsense_Mutation p.R1455* 0.37 TCGA-VQ-A91D-01 5 168135009 168135009 T C SLIT3 Missense_Mutation p.Y939C 0.38 deleterious(0) possibly_damaging(0.798) TCGA-VQ-A91D-01 5 170308862 170308862 G A RANBP17 Missense_Mutation p.R73Q 0.22 deleterious(0.04) possibly_damaging(0.508) TCGA-VQ-A91D-01 5 171303381 171303381 G A FBXW11 Missense_Mutation p.R356C 0.46 deleterious(0.01) probably_damaging(0.973) TCGA-VQ-A91D-01 5 171533687 171533687 G T STK10 Missense_Mutation p.P242H 0.35 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91D-01 5 173380259 173380259 G A CPEB4 Missense_Mutation p.G649E 0.29 deleterious(0.04) possibly_damaging(0.889) TCGA-VQ-A91D-01 5 175751678 175751678 G A SIMC1 Missense_Mutation p.D263N 0.41 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91D-01 5 175843259 175843259 C T CLTB Missense_Mutation p.A36T 0.29 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 5 175958530 175958530 C A RNF44 Missense_Mutation p.Q133H 0.30 deleterious(0.02) benign(0.039) TCGA-VQ-A91D-01 5 176308994 176308994 G A HK3 Missense_Mutation p.R730C 0.34 tolerated(0.18) benign(0.001) TCGA-VQ-A91D-01 5 176939180 176939180 G A DDX41 Missense_Mutation p.A550V 0.31 deleterious(0.04) possibly_damaging(0.487) TCGA-VQ-A91D-01 5 177059310 177059310 T C RP11-1277A3.2 Intron 0.44 TCGA-VQ-A91D-01 5 179196042 179196042 A G MAML1 Silent p.L641L 0.32 TCGA-VQ-A91D-01 5 179264244 179264244 A G SQSTM1 3'UTR 0.48 TCGA-VQ-A91D-01 5 180048203 180048203 G A FLT4 Silent p.N690N 0.39 TCGA-VQ-A91D-01 5 180582782 180582782 G A OR2V2 Silent p.T280T 0.34 TCGA-VQ-A91D-01 5 1879813 1879813 T C IRX4 Missense_Mutation p.I181V 0.40 deleterious(0) probably_damaging(0.941) TCGA-VQ-A91D-01 5 24537741 24537741 T A CDH10 Missense_Mutation p.I92F 0.11 deleterious(0.02) probably_damaging(0.916) TCGA-VQ-A91D-01 5 2749028 2749028 T G IRX2 Missense_Mutation p.D265A 0.21 tolerated(0.19) benign(0.265) TCGA-VQ-A91D-01 5 2749500 2749500 G A IRX2 Silent p.D217D 0.27 TCGA-VQ-A91D-01 5 311405 311405 A C PDCD6 Intron 0.44 TCGA-VQ-A91D-01 5 32087892 32087892 G - PDZD2 Frame_Shift_Del p.D1448Tfs*57 0.18 TCGA-VQ-A91D-01 5 32091144 32091144 G A PDZD2 Silent p.S2530S 0.36 TCGA-VQ-A91D-01 5 33937067 33937067 G A RXFP3 Silent p.A74A 0.33 TCGA-VQ-A91D-01 5 34937648 34937648 C T DNAJC21 Missense_Mutation p.A219V 0.29 deleterious(0.03) possibly_damaging(0.742) TCGA-VQ-A91D-01 5 35654721 35654721 A - SPEF2 Frame_Shift_Del p.I293Sfs*23 0.35 TCGA-VQ-A91D-01 5 37008134 37008134 T - NIPBL Frame_Shift_Del p.F1423Lfs*15 0.27 TCGA-VQ-A91D-01 5 37065070 37065070 A - NIPBL 3'UTR 0.62 TCGA-VQ-A91D-01 5 37379461 37379461 C T WDR70 5'UTR 0.36 TCGA-VQ-A91D-01 5 38950303 38950303 C T RICTOR Missense_Mutation p.R1216H 0.34 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91D-01 5 39203007 39203007 C T FYB Missense_Mutation p.R29Q 0.29 tolerated(0.26) benign(0.241) TCGA-VQ-A91D-01 5 40964946 40964946 G A C7 Missense_Mutation p.R618Q 0.29 tolerated(1) benign(0.004) TCGA-VQ-A91D-01 5 427974 427974 C T AHRR Missense_Mutation p.A276V 0.32 deleterious(0.02) possibly_damaging(0.778) TCGA-VQ-A91D-01 5 45695861 45695861 C T HCN1 Missense_Mutation p.R112H 0.33 deleterious(0) probably_damaging(0.991) TCGA-VQ-A91D-01 5 59901535 59901535 G A DEPDC1B Silent p.G349G 0.09 TCGA-VQ-A91D-01 5 60053357 60053357 T - ELOVL7 Frame_Shift_Del p.K205Nfs*3 0.35 TCGA-VQ-A91D-01 5 63257136 63257136 G A HTR1A Silent p.A137A 0.28 TCGA-VQ-A91D-01 5 63257506 63257506 G A HTR1A Missense_Mutation p.S14L 0.33 tolerated_low_confidence(0.35) benign(0.001) TCGA-VQ-A91D-01 5 64867906 64867906 T A PPWD1 Silent p.P254P 0.32 TCGA-VQ-A91D-01 5 68492902 68492902 A - CENPH Frame_Shift_Del p.N115Tfs*16 0.38 TCGA-VQ-A91D-01 5 71740028 71740028 C T ZNF366 Missense_Mutation p.R597H 0.26 tolerated(0.3) benign(0.002) TCGA-VQ-A91D-01 5 72470065 72470065 G A TMEM174 3'UTR 0.46 TCGA-VQ-A91D-01 5 75969835 75969835 G A IQGAP2 Missense_Mutation p.D1090N 0.32 tolerated(0.16) possibly_damaging(0.838) TCGA-VQ-A91D-01 5 75991421 75991421 G A IQGAP2 Missense_Mutation p.R1379Q 0.39 tolerated(0.15) probably_damaging(0.955) TCGA-VQ-A91D-01 5 76754884 76754884 T C WDR41 Intron 0.29 TCGA-VQ-A91D-01 5 7690862 7690862 T C ADCY2 Missense_Mutation p.I260T 0.16 deleterious(0) possibly_damaging(0.895) TCGA-VQ-A91D-01 5 78379130 78379130 G A BHMT2 Silent p.Q238Q 0.28 TCGA-VQ-A91D-01 5 7878391 7878391 C - MTRR Frame_Shift_Del p.P274Qfs*21 0.23 TCGA-VQ-A91D-01 5 79970915 79970915 A - MSH3 Frame_Shift_Del p.K383Rfs*32 0.58 TCGA-VQ-A91D-01 5 80256573 80256573 C T RASGRF2 Missense_Mutation p.R6C 0.31 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-VQ-A91D-01 5 86659245 86659245 C T RASA1 Nonsense_Mutation p.R512* 0.32 TCGA-VQ-A91D-01 5 86672219 86672219 G A RASA1 Missense_Mutation p.R674H 0.20 tolerated(0.55) possibly_damaging(0.572) TCGA-VQ-A91D-01 5 89969936 89969936 G T GPR98 Missense_Mutation p.L1665F 0.20 probably_damaging(0.992) TCGA-VQ-A91D-01 5 90021370 90021370 A - GPR98 Frame_Shift_Del p.T3354Qfs*10 0.27 TCGA-VQ-A91D-01 5 9063179 9063179 C T SEMA5A Missense_Mutation p.A780T 0.22 tolerated(0.3) benign(0.006) TCGA-VQ-A91D-01 5 93217174 93217174 A G FAM172A Splice_Site p.X262_splice 0.35 TCGA-VQ-A91D-01 5 98235234 98235234 T C CHD1 Silent p.G345G 0.29 TCGA-VQ-A91D-01 6 100841658 100841658 C T SIM1 Silent p.R425R 0.28 TCGA-VQ-A91D-01 6 101091910 101091910 T - ASCC3 Frame_Shift_Del p.K1243Nfs*48 0.29 TCGA-VQ-A91D-01 6 105474343 105474343 A G LIN28B Silent p.K123K 0.35 TCGA-VQ-A91D-01 6 105549009 105549009 A - BVES Frame_Shift_Del p.F346Lfs*9 0.29 TCGA-VQ-A91D-01 6 107076694 107076694 A G RTN4IP1 Missense_Mutation p.I68T 0.09 deleterious(0) probably_damaging(0.933) TCGA-VQ-A91D-01 6 107390507 107390507 C T BEND3 Missense_Mutation p.V630I 0.44 tolerated(0.08) probably_damaging(0.997) TCGA-VQ-A91D-01 6 108616206 108616206 C T LACE1 5'UTR 0.32 TCGA-VQ-A91D-01 6 10990034 10990034 C T ELOVL2 Missense_Mutation p.A223T 0.33 deleterious(0) possibly_damaging(0.888) TCGA-VQ-A91D-01 6 110301103 110301103 A C GPR6 Missense_Mutation p.Q263P 0.33 deleterious(0.02) probably_damaging(0.979) TCGA-VQ-A91D-01 6 110533426 110533426 A T CDC40 Missense_Mutation p.K273M 0.32 deleterious(0) probably_damaging(0.91) TCGA-VQ-A91D-01 6 111688944 111688944 T C REV3L Missense_Mutation p.Y2016C 0.35 deleterious(0.02) benign(0.007) TCGA-VQ-A91D-01 6 111804147 111804147 A G REV3L 5'UTR 0.36 TCGA-VQ-A91D-01 6 112476147 112476147 C T LAMA4 Silent p.A654A 0.26 TCGA-VQ-A91D-01 6 116836954 116836954 T - FAM26E Frame_Shift_Del p.F246Lfs*75 0.30 TCGA-VQ-A91D-01 6 117665251 117665251 T - ROS1 Frame_Shift_Del p.N1499Tfs*5 0.32 TCGA-VQ-A91D-01 6 117686793 117686793 A G ROS1 Missense_Mutation p.V975A 0.38 deleterious(0) possibly_damaging(0.622) TCGA-VQ-A91D-01 6 118015230 118015230 C T NUS1 Missense_Mutation p.P193L 0.28 deleterious(0.04) benign(0.168) TCGA-VQ-A91D-01 6 119341290 119341290 G T FAM184A Silent p.T395T 0.24 TCGA-VQ-A91D-01 6 121602740 121602740 C G TBC1D32 Missense_Mutation p.V520L 0.31 deleterious(0.01) benign(0.113) TCGA-VQ-A91D-01 6 122737416 122737416 C T HSF2 Missense_Mutation p.A169V 0.35 tolerated(0.52) benign(0.005) TCGA-VQ-A91D-01 6 123369781 123369781 G A CLVS2 Silent p.A193A 0.24 TCGA-VQ-A91D-01 6 125283898 125283898 G A RP11-510H23.1 Intron 0.45 TCGA-VQ-A91D-01 6 126243846 126243846 G A NCOA7 Missense_Mutation p.A797T 0.36 tolerated(0.05) probably_damaging(0.978) TCGA-VQ-A91D-01 6 13206135 13206135 G - PHACTR1 Frame_Shift_Del p.P254Qfs*59 0.31 TCGA-VQ-A91D-01 6 132859516 132859516 G T TAAR9 Missense_Mutation p.G30C 0.44 deleterious(0) possibly_damaging(0.569) TCGA-VQ-A91D-01 6 132891671 132891671 G A TAAR6 Missense_Mutation p.V71I 0.39 tolerated(1) benign(0.009) TCGA-VQ-A91D-01 6 13305330 13305330 C T TBC1D7 3'UTR 0.31 TCGA-VQ-A91D-01 6 13365237 13365237 C T GFOD1 Missense_Mutation p.R304H 0.23 deleterious(0.02) benign(0.001) TCGA-VQ-A91D-01 6 13644922 13644924 CTC - RANBP9 In_Frame_Del p.G322del 0.28 TCGA-VQ-A91D-01 6 137524672 137524673 - T IFNGR1 Frame_Shift_Ins p.E233Rfs*9 0.16 TCGA-VQ-A91D-01 6 1390485 1390485 G A FOXF2 Silent p.P101P 0.36 TCGA-VQ-A91D-01 6 139242175 139242175 G A REPS1 Silent p.S475S 0.35 TCGA-VQ-A91D-01 6 143074362 143074362 G A HIVEP2 Missense_Mutation p.T2408M 0.36 deleterious_low_confidence(0) possibly_damaging(0.621) TCGA-VQ-A91D-01 6 144171310 144171310 T A LTV1 Missense_Mutation p.F118I 0.34 deleterious(0.04) possibly_damaging(0.792) TCGA-VQ-A91D-01 6 150290349 150290349 G A ULBP1 Missense_Mutation p.A160T 0.13 tolerated(0.31) benign(0.012) TCGA-VQ-A91D-01 6 151125869 151125869 C T PLEKHG1 Missense_Mutation p.R302W 0.24 deleterious(0) probably_damaging(0.994) TCGA-VQ-A91D-01 6 152129249 152129249 G A ESR1 Missense_Mutation p.A68T 0.43 tolerated(0.42) benign(0.02) TCGA-VQ-A91D-01 6 152485401 152485401 C T SYNE1 Missense_Mutation p.S7896N 0.29 benign(0.012) TCGA-VQ-A91D-01 6 152749369 152749369 C T SYNE1 Silent p.A1649A 0.33 TCGA-VQ-A91D-01 6 157405875 157405875 C T ARID1B Missense_Mutation p.T706M 0.34 probably_damaging(0.961) TCGA-VQ-A91D-01 6 157527495 157527495 C T ARID1B Silent p.D1740D 0.37 TCGA-VQ-A91D-01 6 158014052 158014052 C T ZDHHC14 Missense_Mutation p.R147C 0.28 deleterious(0) probably_damaging(0.982) TCGA-VQ-A91D-01 6 158571572 158571572 T A SERAC1 Missense_Mutation p.T60S 0.30 tolerated(0.13) benign(0.048) TCGA-VQ-A91D-01 6 158923610 158923610 G - TULP4 Frame_Shift_Del p.A974Lfs*50 0.33 TCGA-VQ-A91D-01 6 159654411 159654411 C T FNDC1 Missense_Mutation p.T956I 0.40 deleterious_low_confidence(0) unknown(0) TCGA-VQ-A91D-01 6 160207001 160207001 T - TCP1 Frame_Shift_Del p.N103Mfs*5 0.29 TCGA-VQ-A91D-01 6 160221785 160221785 T - PNLDC1 Frame_Shift_Del p.F10Lfs*9 0.23 TCGA-VQ-A91D-01 6 160466855 160466855 C T IGF2R Missense_Mutation p.A615V 0.08 deleterious(0) probably_damaging(0.987) TCGA-VQ-A91D-01 6 160978463 160978463 G A LPA Missense_Mutation p.T1591I 0.28 tolerated(0.08) probably_damaging(0.988) TCGA-VQ-A91D-01 6 161006078 161006078 G A LPA Missense_Mutation p.A1430V 0.33 tolerated(0.1) possibly_damaging(0.686) TCGA-VQ-A91D-01 6 161560606 161560606 G A AGPAT4 Missense_Mutation p.T297M 0.39 tolerated(0.1) possibly_damaging(0.618) TCGA-VQ-A91D-01 6 161966411 161966411 T C PARK2 Intron 0.52 TCGA-VQ-A91D-01 6 162394348 162394348 C T PARK2 Silent p.T240T 0.30 TCGA-VQ-A91D-01 6 163149187 163149187 T C PACRG Intron 0.22 TCGA-VQ-A91D-01 6 16327849 16327849 C T ATXN1 Silent p.P231P 0.25 TCGA-VQ-A91D-01 6 163899920 163899920 A - QKI Frame_Shift_Del p.K134Rfs*14 0.29 TCGA-VQ-A91D-01 6 165792751 165792751 A G PDE10A Silent p.F639F 0.20 TCGA-VQ-A91D-01 6 166720933 166720933 G T PRR18 Missense_Mutation p.P233Q 0.52 tolerated(0.11) probably_damaging(0.946) TCGA-VQ-A91D-01 6 167550111 167550111 C T CCR6 Silent p.C131C 0.28 TCGA-VQ-A91D-01 6 18218031 18218032 AC - KDM1B Frame_Shift_Del p.Y535* 0.28 TCGA-VQ-A91D-01 6 24551725 24551725 T - KIAA0319 Frame_Shift_Del p.T993Qfs*17 0.25 TCGA-VQ-A91D-01 6 24564464 24564464 C T KIAA0319 Silent p.S799S 0.41 TCGA-VQ-A91D-01 6 24718827 24718828 - T C6orf62 Frame_Shift_Ins p.E24Rfs*5 0.26 TCGA-VQ-A91D-01 6 25726598 25726598 G A HIST1H2AA Missense_Mutation p.A53V 0.32 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-VQ-A91D-01 6 26017725 26017725 T C HIST1H1A Missense_Mutation p.N79S 0.30 deleterious(0) probably_damaging(0.992) TCGA-VQ-A91D-01 6 26021949 26021949 G A HIST1H4A Missense_Mutation p.G15S 0.24 tolerated_low_confidence(0.07) unknown(0) TCGA-VQ-A91D-01 6 26246939 26246939 G A HIST1H4G Silent p.Y89Y 0.27 TCGA-VQ-A91D-01 6 26250759 26250759 C T HIST1H3F Silent p.A25A 0.32 TCGA-VQ-A91D-01 6 26377313 26377313 G A BTN3A2 3'UTR 0.42 TCGA-VQ-A91D-01 6 26388255 26388255 C - BTN2A2 Frame_Shift_Del p.L154Sfs*40 0.24 TCGA-VQ-A91D-01 6 27107219 27107219 G A HIST1H4I Silent p.V44V 0.17 TCGA-VQ-A91D-01 6 27368980 27368980 T C ZNF391 Silent p.Y277Y 0.23 TCGA-VQ-A91D-01 6 27835005 27835005 G A HIST1H1B Silent p.G101G 0.05 TCGA-VQ-A91D-01 6 28212955 28212955 C T ZKSCAN4 Missense_Mutation p.R526Q 0.29 tolerated(0.29) benign(0.344) TCGA-VQ-A91D-01 6 28268660 28268660 A - PGBD1 Frame_Shift_Del p.D346Tfs*5 0.18 TCGA-VQ-A91D-01 6 28327544 28327544 C T ZKSCAN3 Missense_Mutation p.R61C 0.36 deleterious(0) probably_damaging(0.976) TCGA-VQ-A91D-01 6 28967407 28967407 C A ZNF311 Intron 0.38 TCGA-VQ-A91D-01 6 29141779 29141779 C T OR2J2 Missense_Mutation p.R123C 0.32 deleterious(0.01) benign(0.336) TCGA-VQ-A91D-01 6 29625018 29625018 G A MOG Missense_Mutation p.S11N 0.23 deleterious(0.04) unknown(0) TCGA-VQ-A91D-01 6 30458230 30458230 A C HLA-E Missense_Mutation p.D183A 0.33 deleterious_low_confidence(0.01) benign(0.116) TCGA-VQ-A91D-01 6 30672422 30672422 C T MDC1 Missense_Mutation p.R1513Q 0.39 tolerated(0.7) benign(0.015) TCGA-VQ-A91D-01 6 30676075 30676075 C T MDC1 Missense_Mutation p.E761K 0.47 deleterious(0.03) probably_damaging(0.956) TCGA-VQ-A91D-01 6 31129509 31129509 T A TCF19 Missense_Mutation p.I175N 0.30 deleterious(0) possibly_damaging(0.781) TCGA-VQ-A91D-01 6 31675801 31675801 C T LY6G6F Missense_Mutation p.A179V 0.38 deleterious(0.01) possibly_damaging(0.739) TCGA-VQ-A91D-01 6 31686859 31686860 - A LY6G6C 3'UTR 0.26 TCGA-VQ-A91D-01 6 31779696 31779696 G A HSPA1L Silent p.S18S 0.38 TCGA-VQ-A91D-01 6 31785295 31785295 G A HSPA1A Missense_Mutation p.E588K 0.25 deleterious_low_confidence(0.01) benign(0.321) TCGA-VQ-A91D-01 6 31934881 31934881 G - SKIV2L Frame_Shift_Del p.E816Rfs*3 0.22 TCGA-VQ-A91D-01 6 31996581 31996581 C T C4B Silent p.D1114D 0.32 TCGA-VQ-A91D-01 6 32150142 32150142 G - AGER Frame_Shift_Del p.S283Afs*4 0.28 TCGA-VQ-A91D-01 6 32169236 32169236 C T NOTCH4 Missense_Mutation p.G1266E 0.32 deleterious(0.03) probably_damaging(0.936) TCGA-VQ-A91D-01 6 32373023 32373023 G A BTNL2 Silent p.A40A 0.41 TCGA-VQ-A91D-01 6 32632639 32632639 C T HLA-DQB1 Silent p.A105A 0.33 TCGA-VQ-A91D-01 6 32803456 32803456 G A TAP2 Missense_Mutation p.R235C 0.40 tolerated(0.07) benign(0.117) TCGA-VQ-A91D-01 6 33157111 33157111 C T COL11A2 Missense_Mutation p.R73H 0.26 benign(0.049) TCGA-VQ-A91D-01 6 35051201 35051201 C T ANKS1A Missense_Mutation p.T972M 0.39 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91D-01 6 37250106 37250106 C T TBC1D22B Silent p.F189F 0.15 TCGA-VQ-A91D-01 6 37358701 37358701 C T RNF8 3'UTR 0.29 TCGA-VQ-A91D-01 6 38994431 38994431 G A DNAH8 Silent p.T4391T 0.36 TCGA-VQ-A91D-01 6 39285578 39285578 C T KCNK16 Missense_Mutation p.R160H 0.24 tolerated(0.16) benign(0.002) TCGA-VQ-A91D-01 6 42637865 42637865 C T UBR2 Missense_Mutation p.T1306M 0.25 tolerated(0.11) benign(0.018) TCGA-VQ-A91D-01 6 42832496 42832496 G A GLTSCR1L Missense_Mutation p.S851N 0.41 tolerated(0.11) benign(0.302) TCGA-VQ-A91D-01 6 42902259 42902259 C T CNPY3 Silent p.T66T 0.31 TCGA-VQ-A91D-01 6 43017809 43017809 T C CUL7 Silent p.E571E 0.35 TCGA-VQ-A91D-01 6 43192096 43192096 C T CUL9 Silent p.S2489S 0.42 TCGA-VQ-A91D-01 6 43271880 43271880 C G SLC22A7 Missense_Mutation p.T497S 0.27 deleterious(0.02) benign(0.04) TCGA-VQ-A91D-01 6 45290633 45290633 C T SUPT3H Silent p.T7T 0.36 TCGA-VQ-A91D-01 6 45480009 45480009 C T RUNX2 Missense_Mutation p.P296S 0.37 tolerated(0.18) probably_damaging(0.998) TCGA-VQ-A91D-01 6 46830751 46830751 G A GPR116 Silent p.N691N 0.27 TCGA-VQ-A91D-01 6 49574609 49574609 C T RHAG Nonsense_Mutation p.W388* 0.23 TCGA-VQ-A91D-01 6 49701454 49701454 G A CRISP3 Missense_Mutation p.P152S 0.38 deleterious(0.04) benign(0.143) TCGA-VQ-A91D-01 6 54806728 54806728 C T FAM83B Missense_Mutation p.R987C 0.36 deleterious(0.01) possibly_damaging(0.513) TCGA-VQ-A91D-01 6 55113448 55113448 G C HCRTR2 Missense_Mutation p.V79L 0.27 deleterious(0) probably_damaging(0.996) TCGA-VQ-A91D-01 6 56963872 56963872 G A ZNF451 Missense_Mutation p.R40Q 0.33 deleterious(0) probably_damaging(0.981) TCGA-VQ-A91D-01 6 57048631 57048631 C T BAG2 Silent p.T93T 0.29 TCGA-VQ-A91D-01 6 656546 656546 G A HUS1B Silent p.P133P 0.33 TCGA-VQ-A91D-01 6 69349181 69349181 G - BAI3 Frame_Shift_Del p.I207Sfs*6 0.22 TCGA-VQ-A91D-01 6 70983748 70983748 A G COL9A1 Splice_Site p.X355_splice 0.50 TCGA-VQ-A91D-01 6 74116144 74116144 G T DDX43 Nonsense_Mutation p.G289* 0.33 TCGA-VQ-A91D-01 6 76024910 76024910 T - FILIP1 Frame_Shift_Del p.K213Sfs*24 0.22 TCGA-VQ-A91D-01 6 79607568 79607568 T G IRAK1BP1 Missense_Mutation p.F135C 0.43 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 6 79607626 79607626 C T IRAK1BP1 Silent p.V154V 0.33 TCGA-VQ-A91D-01 6 80717655 80717655 G A TTK Missense_Mutation p.R90H 0.32 tolerated(0.51) benign(0.046) TCGA-VQ-A91D-01 6 82950172 82950173 TT - IBTK Frame_Shift_Del p.K11Vfs*23 0.27 TCGA-VQ-A91D-01 6 84055952 84055952 G A ME1 Silent p.C180C 0.28 TCGA-VQ-A91D-01 6 85466488 85466488 C T TBX18 Silent p.E233E 0.19 TCGA-VQ-A91D-01 6 90382022 90382022 G A MDN1 Missense_Mutation p.A4564V 0.23 possibly_damaging(0.642) TCGA-VQ-A91D-01 6 90432720 90432720 A C MDN1 Missense_Mutation p.F1974C 0.33 possibly_damaging(0.593) TCGA-VQ-A91D-01 6 90660238 90660238 C T BACH2 Silent p.A529A 0.42 TCGA-VQ-A91D-01 6 94066671 94066671 A G EPHA7 Missense_Mutation p.V363A 0.40 deleterious(0) possibly_damaging(0.551) TCGA-VQ-A91D-01 6 96999786 96999786 A - UFL1 Frame_Shift_Del p.R660Gfs*17 0.29 TCGA-VQ-A91D-01 7 100029025 100029025 G A MEPCE Missense_Mutation p.A462T 0.26 deleterious(0) probably_damaging(0.998) TCGA-VQ-A91D-01 7 100084682 100084682 G - NYAP1 Frame_Shift_Del p.G104Afs*99 0.37 TCGA-VQ-A91D-01 7 100086614 100086614 C T NYAP1 Missense_Mutation p.L424F 0.29 tolerated(0.07) benign(0.414) TCGA-VQ-A91D-01 7 100087051 100087052 - G NYAP1 Frame_Shift_Ins p.V572Gfs*4 0.37 TCGA-VQ-A91D-01 7 100205624 100205624 C T PCOLCE Silent p.S416S 0.23 TCGA-VQ-A91D-01 7 100244240 100244240 G A ACTL6B Silent p.G349G 0.25 TCGA-VQ-A91D-01 7 100348853 100348853 A G ZAN Missense_Mutation p.M524V 0.32 benign(0.025) TCGA-VQ-A91D-01 7 100468258 100468258 C T TRIP6 Missense_Mutation p.R298C 0.23 deleterious(0) probably_damaging(0.993) TCGA-VQ-A91D-01 7 100468350 100468350 C T TRIP6 Silent p.C328C 0.23 TCGA-VQ-A91D-01 7 100483560 100483560 C T SRRT Missense_Mutation p.R486C 0.21 deleterious(0) possibly_damaging(0.848) TCGA-VQ-A91D-01 7 100483923 100483923 G A SRRT Missense_Mutation p.R505H 0.25 deleterious(0) possibly_damaging(0.512) TCGA-VQ-A91D-01 7 100677658 100677658 C T MUC17 Silent p.S987S 0.27 TCGA-VQ-A91D-01 7 100677660 100677660 C T MUC17 Missense_Mutation p.T988I 0.27 benign(0.006) TCGA-VQ-A91D-01 7 100681152 100681152 A C MUC17 Missense_Mutation p.Q2152P 0.28 unknown(0) TCGA-VQ-A91D-01 7 100883127 100883127 G A FIS1 Missense_Mutation p.A140V 0.44 tolerated(1) benign(0.142) TCGA-VQ-A91D-01 7 101459318 101459318 C A CUX1 Missense_Mutation p.A3D 0.23 deleterious(0) unknown(0) TCGA-VQ-A91D-01 7 101838791 101838791 C T CUX1 Missense_Mutation p.A388V 0.28 tolerated(0.14) unknown(0) TCGA-VQ-A91D-01 7 101921326 101921326 A G CUX1 Missense_Mutation p.Y555C 0.29 deleterious(0) probably_damaging(0.951) TCGA-VQ-A91D-01 7 102874321 102874321 G T DPY19L2P2 RNA 0.46 TCGA-VQ-A91D-01 7 1037311 1037311 G - C7orf50 Frame_Shift_Del p.L179Cfs*136 0.26 TCGA-VQ-A91D-01 7 103969223 103969223 G A LHFPL3 5'UTR 0.33 TCGA-VQ-A91D-01 7 104741933 104741937 AGAAA - KMT2E Frame_Shift_Del p.R598Tfs*12 0.40 TCGA-VQ-A91D-01 7 105664960 105664960 C A CDHR3 Missense_Mutation p.A737D 0.18 tolerated(0.2) possibly_damaging(0.475) TCGA-VQ-A91D-01 7 106523513 106523513 G A PIK3CG Missense_Mutation p.A889T 0.41 deleterious(0) probably_damaging(0.967) TCGA-VQ-A91D-01 7 106793623 106793623 T G PRKAR2B Missense_Mutation p.F282C 0.36 tolerated(0.19) benign(0.025) TCGA-VQ-A91D-01 7 107626803 107626803 G T LAMB1 Missense_Mutation p.F143L 0.40 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91D-01 7 107696383 107696383 C T LAMB4 Missense_Mutation p.R1150Q 0.31 tolerated(0.22) benign(0.43) TCGA-VQ-A91D-01 7 107872812 107872812 G A NRCAM Missense_Mutation p.R129C 0.34 tolerated(0.07) probably_damaging(0.99) TCGA-VQ-A91D-01 7 115594657 115594657 T - TFEC Frame_Shift_Del p.K141Rfs*42 0.31 TCGA-VQ-A91D-01 7 117232304 117232305 - A CFTR Frame_Shift_Ins p.R697Kfs*33 0.35 TCGA-VQ-A91D-01 7 120596202 120596203 - T ING3 Intron 0.43 TCGA-VQ-A91D-01 7 121653104 121653104 A G PTPRZ1 Missense_Mutation p.E1335G 0.36 tolerated_low_confidence(0.06) benign(0.006) TCGA-VQ-A91D-01 7 128852104 128852104 C T SMO Nonsense_Mutation p.R726* 0.50 TCGA-VQ-A91D-01 7 133948799 133948799 C T LRGUK 3'UTR 0.22 TCGA-VQ-A91D-01 7 134252993 134252993 G C AKR1B15 Missense_Mutation p.E78D 0.26 deleterious(0.04) benign(0.158) TCGA-VQ-A91D-01 7 134618034 134618034 T C CALD1 Missense_Mutation p.Y172H 0.32 tolerated(0.12) unknown(0) TCGA-VQ-A91D-01 7 134849662 134849662 G A TMEM140 Missense_Mutation p.A157T 0.31 tolerated(0.13) probably_damaging(1) TCGA-VQ-A91D-01 7 134880963 134880963 C T WDR91 Missense_Mutation p.E393K 0.42 tolerated(0.17) benign(0.173) TCGA-VQ-A91D-01 7 135282903 135282903 A T NUP205 Missense_Mutation p.D741V 0.38 deleterious(0) probably_damaging(0.974) TCGA-VQ-A91D-01 7 138255645 138255645 C T TRIM24 Missense_Mutation p.T592M 0.36 deleterious(0) probably_damaging(0.958) TCGA-VQ-A91D-01 7 138764822 138764822 G A ZC3HAV1 Missense_Mutation p.P289S 0.40 tolerated(0.26) benign(0.006) TCGA-VQ-A91D-01 7 139229057 139229057 C T CLEC2L Missense_Mutation p.P205L 0.28 tolerated(0.36) possibly_damaging(0.757) TCGA-VQ-A91D-01 7 139790983 139790983 G A KDM7A Missense_Mutation p.R913C 0.43 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91D-01 7 141427234 141427234 C T WEE2 Missense_Mutation p.A508V 0.40 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 7 141766492 141766492 C T MGAM Intron 0.68 TCGA-VQ-A91D-01 7 142028582 142028583 TC - TRBV6-1 Frame_Shift_Del p.S106Cfs*8 0.16 TCGA-VQ-A91D-01 7 142176457 142176457 T C TRBV7-4 Silent p.Q73Q 0.17 TCGA-VQ-A91D-01 7 142494954 142494954 G A TRBJ2-6 Missense_Mutation p.G12S 0.44 unknown(0) TCGA-VQ-A91D-01 7 143053681 143053681 G A FAM131B Nonsense_Mutation p.Q349* 0.23 TCGA-VQ-A91D-01 7 144060983 144060983 G A ARHGEF5 Missense_Mutation p.M407I 0.12 tolerated(0.2) benign(0.008) TCGA-VQ-A91D-01 7 146829418 146829418 C T CNTNAP2 Missense_Mutation p.R389W 0.46 tolerated(0.13) possibly_damaging(0.786) TCGA-VQ-A91D-01 7 148485657 148485657 C T CUL1 Silent p.C496C 0.23 TCGA-VQ-A91D-01 7 148768360 148768360 G A ZNF786 Missense_Mutation p.R502W 0.26 tolerated(0.09) benign(0.243) TCGA-VQ-A91D-01 7 148963614 148963614 G A ZNF783 Silent p.T71T 0.36 TCGA-VQ-A91D-01 7 148979385 148979385 G A ZNF783 Missense_Mutation p.R531H 0.24 tolerated_low_confidence(0.65) benign(0) TCGA-VQ-A91D-01 7 149473144 149473144 C T ZNF467 5'Flank 0.60 TCGA-VQ-A91D-01 7 149473162 149473162 C T ZNF467 5'Flank 0.59 TCGA-VQ-A91D-01 7 149497386 149497386 G A SSPO RNA 0.32 TCGA-VQ-A91D-01 7 149509498 149509498 A G SSPO RNA 0.36 TCGA-VQ-A91D-01 7 149510793 149510793 G A SSPO RNA 0.27 TCGA-VQ-A91D-01 7 149519704 149519704 G T SSPO RNA 0.21 TCGA-VQ-A91D-01 7 150068614 150068614 G A REPIN1 Missense_Mutation p.R152H 0.49 tolerated(0.12) benign(0.167) TCGA-VQ-A91D-01 7 150095039 150095039 G A ZNF775 Silent p.T490T 0.21 TCGA-VQ-A91D-01 7 150554688 150554688 G A AOC1 Missense_Mutation p.G377D 0.30 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91D-01 7 150656679 150656679 G - KCNH2 Frame_Shift_Del p.T152Pfs*14 0.28 TCGA-VQ-A91D-01 7 150739174 150739174 G A ABCB8 Missense_Mutation p.E582K 0.41 tolerated(0.17) benign(0.005) TCGA-VQ-A91D-01 7 150783996 150783996 G C AGAP3 Silent p.G56G 0.38 TCGA-VQ-A91D-01 7 150846075 150846075 T C GBX1 Silent p.G231G 0.44 TCGA-VQ-A91D-01 7 151805284 151805284 G A GALNT11 Missense_Mutation p.G292R 0.39 deleterious(0) probably_damaging(0.992) TCGA-VQ-A91D-01 7 151810418 151810418 G A GALNT11 Missense_Mutation p.E390K 0.41 tolerated(0.4) benign(0.075) TCGA-VQ-A91D-01 7 151874914 151874914 A - KMT2C Frame_Shift_Del p.S2542Hfs*20 0.30 TCGA-VQ-A91D-01 7 1520897 1520897 G A INTS1 Intron 0.31 TCGA-VQ-A91D-01 7 154598777 154598777 G A DPP6 Missense_Mutation p.A541T 0.34 deleterious(0.03) possibly_damaging(0.623) TCGA-VQ-A91D-01 7 154862859 154862859 G A HTR5A-AS1 Missense_Mutation p.T52M 0.24 tolerated_low_confidence(0.79) benign(0) TCGA-VQ-A91D-01 7 154863081 154863081 T A HTR5A Missense_Mutation p.S158T 0.26 tolerated(0.06) probably_damaging(0.964) TCGA-VQ-A91D-01 7 156469181 156469181 C T RNF32 Silent p.R307R 0.17 TCGA-VQ-A91D-01 7 158480075 158480075 G A NCAPG2 Silent p.H244H 0.19 TCGA-VQ-A91D-01 7 1586574 1586574 C T TMEM184A 3'UTR 0.47 TCGA-VQ-A91D-01 7 16729518 16729518 A G BZW2 Missense_Mutation p.D213G 0.20 deleterious(0.04) benign(0.174) TCGA-VQ-A91D-01 7 17889974 17889974 C T SNX13 Missense_Mutation p.G354D 0.27 deleterious(0) probably_damaging(0.962) TCGA-VQ-A91D-01 7 18767354 18767354 G A HDAC9 Missense_Mutation p.R628H 0.32 deleterious(0.04) benign(0.195) TCGA-VQ-A91D-01 7 20371450 20371450 T - ITGB8 Frame_Shift_Del p.F9Lfs*81 0.27 TCGA-VQ-A91D-01 7 20824272 20824272 A C SP8 Silent p.T388T 0.28 TCGA-VQ-A91D-01 7 21727144 21727144 A T DNAH11 Nonsense_Mutation p.R1982* 0.17 TCGA-VQ-A91D-01 7 2279242 2279242 G A FTSJ2 Nonsense_Mutation p.R37* 0.47 TCGA-VQ-A91D-01 7 2289567 2289567 C T NUDT1 Silent p.G99G 0.24 TCGA-VQ-A91D-01 7 2302931 2302931 G T SNX8 Silent p.S283S 0.18 TCGA-VQ-A91D-01 7 23236325 23236325 T A NUPL2 Missense_Mutation p.N183K 0.08 tolerated(0.35) benign(0.394) TCGA-VQ-A91D-01 7 2415065 2415065 C T EIF3B Missense_Mutation p.T644M 0.24 deleterious(0.02) probably_damaging(0.998) TCGA-VQ-A91D-01 7 2472370 2472370 G A CHST12 Silent p.A32A 0.52 TCGA-VQ-A91D-01 7 2473372 2473372 G A CHST12 Silent p.P366P 0.34 TCGA-VQ-A91D-01 7 2577792 2577792 C T BRAT1 Missense_Mutation p.D793N 0.30 deleterious(0.01) probably_damaging(0.984) TCGA-VQ-A91D-01 7 26411618 26411618 A - SNX10 Frame_Shift_Del p.E166Kfs*4 0.40 TCGA-VQ-A91D-01 7 26412226 26412226 C T SNX10 3'UTR 0.45 TCGA-VQ-A91D-01 7 27150315 27150315 G T HOXA3 5'UTR 0.20 TCGA-VQ-A91D-01 7 27204994 27204994 C T HOXA9 Missense_Mutation p.G28D 0.31 tolerated(0.1) benign(0.188) TCGA-VQ-A91D-01 7 28996130 28996130 C T AC005013.5 5'Flank 0.29 TCGA-VQ-A91D-01 7 32526814 32526814 T A LSM5 3'UTR 0.73 TCGA-VQ-A91D-01 7 36489380 36489380 G A ANLN Missense_Mutation p.R1062Q 0.29 deleterious(0) probably_damaging(0.989) TCGA-VQ-A91D-01 7 37946954 37946958 GTCTA CTT SFRP4 3'UTR 0.52 TCGA-VQ-A91D-01 7 40118334 40118334 G A CDK13 Silent p.A971A 0.25 TCGA-VQ-A91D-01 7 43917061 43917061 C T URGCP Silent p.T667T 0.44 TCGA-VQ-A91D-01 7 44120414 44120414 G - POLM Frame_Shift_Del p.P97Qfs*6 0.24 TCGA-VQ-A91D-01 7 44579074 44579074 C T NPC1L1 Missense_Mutation p.A308T 0.24 tolerated(0.55) benign(0.004) TCGA-VQ-A91D-01 7 45010560 45010560 C T MYO1G Silent p.T315T 0.26 TCGA-VQ-A91D-01 7 45016471 45016471 C T MYO1G Missense_Mutation p.V99I 0.23 tolerated(0.11) probably_damaging(0.997) TCGA-VQ-A91D-01 7 45113919 45113919 G A CCM2 Silent p.L343L 0.31 TCGA-VQ-A91D-01 7 48559861 48559861 G C ABCA13 Silent p.L4674L 0.43 TCGA-VQ-A91D-01 7 4917376 4917376 C T RADIL Missense_Mutation p.R132Q 0.39 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 7 4917529 4917529 A G RADIL Missense_Mutation p.V81A 0.17 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 7 50513792 50513792 T A FIGNL1 Silent p.V398V 0.06 TCGA-VQ-A91D-01 7 5104947 5104947 G A RBAK Silent p.E620E 0.34 TCGA-VQ-A91D-01 7 5265476 5265476 G T WIPI2 Missense_Mutation p.A255S 0.34 tolerated(0.51) benign(0.061) TCGA-VQ-A91D-01 7 5340098 5340098 G A SLC29A4 Missense_Mutation p.A419T 0.46 tolerated(0.39) benign(0.21) TCGA-VQ-A91D-01 7 5340174 5340174 G A SLC29A4 Missense_Mutation p.R444H 0.30 tolerated(0.08) possibly_damaging(0.75) TCGA-VQ-A91D-01 7 55273130 55273130 C A EGFR Missense_Mutation p.F1151L 0.55 tolerated(0.16) benign(0) TCGA-VQ-A91D-01 7 5643183 5643183 C T FSCN1 Missense_Mutation p.A349V 0.45 deleterious(0) possibly_damaging(0.908) TCGA-VQ-A91D-01 7 6049016 6049016 C T AIMP2 Missense_Mutation p.P8S 0.26 deleterious(0.02) benign(0.093) TCGA-VQ-A91D-01 7 6513868 6513868 G A KDELR2 Missense_Mutation p.R47C 0.27 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91D-01 7 65150741 65150741 G A INTS4L2 RNA 0.38 TCGA-VQ-A91D-01 7 66463178 66463178 C T TYW1 Missense_Mutation p.T44M 0.34 tolerated_low_confidence(0.06) benign(0.004) TCGA-VQ-A91D-01 7 6731472 6731473 GT - ZNF12 Frame_Shift_Del p.H367Pfs*18 0.20 TCGA-VQ-A91D-01 7 6803561 6803561 C T RSPH10B2 Silent p.G134G 0.15 TCGA-VQ-A91D-01 7 72420466 72420466 C T POM121 3'UTR 0.42 TCGA-VQ-A91D-01 7 72430663 72430663 C A TRIM74 Silent p.V205V 0.32 TCGA-VQ-A91D-01 7 73609645 73609645 G A EIF4H 3'UTR 0.44 TCGA-VQ-A91D-01 7 73731896 73731896 T C CLIP2 Missense_Mutation p.L7P 0.38 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91D-01 7 75045663 75045663 G A POM121C 3'Flank 0.41 TCGA-VQ-A91D-01 7 7557425 7557425 A G COL28A1 Splice_Site p.X285_splice 0.32 TCGA-VQ-A91D-01 7 76112036 76112036 G A DTX2 Silent p.T160T 0.26 TCGA-VQ-A91D-01 7 77885428 77885428 G A MAGI2 Missense_Mutation p.R627W 0.33 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 7 780467 780467 G A HEATR2 Silent p.A264A 0.42 TCGA-VQ-A91D-01 7 78119085 78119085 T G MAGI2 Missense_Mutation p.K346N 0.35 tolerated(0.06) possibly_damaging(0.731) TCGA-VQ-A91D-01 7 81695796 81695796 G A CACNA2D1 Missense_Mutation p.L235F 0.35 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91D-01 7 83098600 83098600 C T SEMA3E Missense_Mutation p.A99T 0.21 tolerated(0.3) benign(0.006) TCGA-VQ-A91D-01 7 83592570 83592570 G A SEMA3A Missense_Mutation p.A604V 0.44 deleterious(0.02) possibly_damaging(0.71) TCGA-VQ-A91D-01 7 84671546 84671546 G A SEMA3D Missense_Mutation p.A306V 0.04 deleterious(0.01) probably_damaging(1) TCGA-VQ-A91D-01 7 86493775 86493775 T - GRM3 3'UTR 0.30 TCGA-VQ-A91D-01 7 86813769 86813769 A G DMTF1 Missense_Mutation p.S293G 0.24 tolerated(1) benign(0.002) TCGA-VQ-A91D-01 7 88965365 88965365 T C ZNF804B Silent p.D1023D 0.17 TCGA-VQ-A91D-01 7 90547013 90547013 C T CDK14 Missense_Mutation p.T249M 0.23 tolerated(0.14) possibly_damaging(0.839) TCGA-VQ-A91D-01 7 90895117 90895117 C T FZD1 Missense_Mutation p.L308F 0.37 tolerated(0.25) benign(0.013) TCGA-VQ-A91D-01 7 91755610 91755610 C T CYP51A1 Missense_Mutation p.A243T 0.32 tolerated(0.32) possibly_damaging(0.577) TCGA-VQ-A91D-01 7 92462462 92462462 A T CDK6 Missense_Mutation p.I59N 0.25 deleterious(0) probably_damaging(0.998) TCGA-VQ-A91D-01 7 925716 925716 C T GET4 Missense_Mutation p.T60M 0.25 deleterious(0.04) benign(0.298) TCGA-VQ-A91D-01 7 94293501 94293501 C T PEG10 Silent p.S211S 0.44 TCGA-VQ-A91D-01 7 95165748 95165748 G T ASB4 Splice_Site p.X327_splice 0.48 TCGA-VQ-A91D-01 7 97872859 97872859 C T TECPR1 Missense_Mutation p.D193N 0.31 deleterious(0) possibly_damaging(0.716) TCGA-VQ-A91D-01 7 98633105 98633105 G A SMURF1 Intron 0.17 TCGA-VQ-A91D-01 7 99110140 99110140 G A ZKSCAN5 Missense_Mutation p.C160Y 0.46 tolerated(0.65) benign(0) TCGA-VQ-A91D-01 7 99673240 99673240 T C ZNF3 Silent p.K23K 0.19 TCGA-VQ-A91D-01 7 99702533 99702533 C T AP4M1 Missense_Mutation p.R215W 0.36 deleterious(0) probably_damaging(0.995) TCGA-VQ-A91D-01 7 99709449 99709449 G A TAF6 Missense_Mutation p.R305C 0.34 deleterious(0.03) benign(0.08) TCGA-VQ-A91D-01 7 99818742 99818742 C T PVRIG Silent p.G283G 0.40 TCGA-VQ-A91D-01 7 99997579 99997579 C T PILRA 3'UTR 0.25 TCGA-VQ-A91D-01 8 100523539 100523539 C T VPS13B Missense_Mutation p.L1503F 0.14 tolerated(0.09) probably_damaging(0.969) TCGA-VQ-A91D-01 8 10464464 10464464 C T RP1L1 Missense_Mutation p.A2382T 0.38 unknown(0) TCGA-VQ-A91D-01 8 10468122 10468122 G A RP1L1 Silent p.D1162D 0.25 TCGA-VQ-A91D-01 8 10468310 10468310 C T RP1L1 Missense_Mutation p.V1100M 0.26 benign(0.004) TCGA-VQ-A91D-01 8 105367350 105367351 - A DCSTAMP Frame_Shift_Ins p.R428Kfs*31 0.22 TCGA-VQ-A91D-01 8 107782297 107782297 C T ABRA Missense_Mutation p.S41N 0.31 tolerated(0.46) benign(0.025) TCGA-VQ-A91D-01 8 109465341 109465341 G T EMC2 Missense_Mutation p.K90N 0.29 tolerated(0.09) benign(0.062) TCGA-VQ-A91D-01 8 109796598 109796598 C T TMEM74 Missense_Mutation p.V244I 0.24 deleterious(0.01) benign(0.319) TCGA-VQ-A91D-01 8 110441651 110441651 T C PKHD1L1 Missense_Mutation p.V1028A 0.25 deleterious(0) benign(0.034) TCGA-VQ-A91D-01 8 110478911 110478911 G A PKHD1L1 Missense_Mutation p.A2840T 0.38 tolerated(0.52) benign(0.002) TCGA-VQ-A91D-01 8 113241028 113241029 - A CSMD3 Frame_Shift_Ins p.A3641Cfs*13 0.35 TCGA-VQ-A91D-01 8 113317094 113317094 G A CSMD3 Nonsense_Mutation p.R2708* 0.27 TCGA-VQ-A91D-01 8 114449056 114449056 G A CSMD3 Nonsense_Mutation p.R10* 0.29 TCGA-VQ-A91D-01 8 116632100 116632100 C T TRPS1 Silent p.L75L 0.17 TCGA-VQ-A91D-01 8 118825146 118825146 T C EXT1 Missense_Mutation p.S563G 0.32 deleterious(0.01) benign(0.398) TCGA-VQ-A91D-01 8 119936911 119936911 G A TNFRSF11B Missense_Mutation p.P303L 0.29 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 8 120814191 120814192 - T TAF2 Frame_Shift_Ins p.M212Nfs*6 0.26 TCGA-VQ-A91D-01 8 121344952 121344952 C T COL14A1 Missense_Mutation p.P1588L 0.23 deleterious(0.03) probably_damaging(1) TCGA-VQ-A91D-01 8 121528422 121528422 C A MTBP Missense_Mutation p.P746H 0.31 tolerated(0.08) possibly_damaging(0.473) TCGA-VQ-A91D-01 8 123964573 123964573 G A ZHX2 Missense_Mutation p.A275T 0.24 tolerated(1) benign(0.343) TCGA-VQ-A91D-01 8 124265603 124265603 G A ZHX1 Nonsense_Mutation p.R862* 0.27 TCGA-VQ-A91D-01 8 126056120 126056120 C T KIAA0196 Missense_Mutation p.A933T 0.39 tolerated(0.38) possibly_damaging(0.857) TCGA-VQ-A91D-01 8 126087269 126087269 T C KIAA0196 Missense_Mutation p.T317A 0.08 deleterious(0.01) probably_damaging(0.953) TCGA-VQ-A91D-01 8 128428462 128428462 C - POU5F1B Frame_Shift_Del p.P119Lfs*4 0.26 TCGA-VQ-A91D-01 8 131955607 131955607 C T ADCY8 Missense_Mutation p.R448Q 0.20 deleterious(0.01) probably_damaging(0.997) TCGA-VQ-A91D-01 8 134232957 134232957 C - WISP1 Frame_Shift_Del p.P163Rfs*11 0.26 TCGA-VQ-A91D-01 8 134260984 134260984 C T NDRG1 Missense_Mutation p.M243I 0.20 tolerated(0.64) benign(0.002) TCGA-VQ-A91D-01 8 134269059 134269059 G A NDRG1 Silent p.N166N 0.24 TCGA-VQ-A91D-01 8 139151231 139151232 - T FAM135B Frame_Shift_Ins p.T1300Nfs*7 0.27 TCGA-VQ-A91D-01 8 13948038 13948038 C T SGCZ Missense_Mutation p.V285I 0.33 tolerated(0.17) benign(0.008) TCGA-VQ-A91D-01 8 139767418 139767418 G A COL22A1 Silent p.P671P 0.39 TCGA-VQ-A91D-01 8 141297769 141297769 G A TRAPPC9 Missense_Mutation p.S738F 0.11 deleterious(0.02) probably_damaging(0.992) TCGA-VQ-A91D-01 8 141461274 141461274 C T TRAPPC9 Missense_Mutation p.E165K 0.17 deleterious(0.01) probably_damaging(0.98) TCGA-VQ-A91D-01 8 142175371 142175371 C A DENND3 Silent p.T432T 0.46 TCGA-VQ-A91D-01 8 143561107 143561107 A G BAI1 Missense_Mutation p.T594A 0.34 tolerated(0.23) possibly_damaging(0.523) TCGA-VQ-A91D-01 8 143599588 143599588 C T BAI1 Silent p.Y969Y 0.26 TCGA-VQ-A91D-01 8 144992743 144992743 C T PLEC Missense_Mutation p.R3886Q 0.35 probably_damaging(0.998) TCGA-VQ-A91D-01 8 144998243 144998243 G A PLEC Missense_Mutation p.R2089C 0.50 unknown(0) TCGA-VQ-A91D-01 8 145095251 145095251 T C SPATC1 Missense_Mutation p.M218T 0.28 tolerated(0.09) benign(0.005) TCGA-VQ-A91D-01 8 145771098 145771098 G A ARHGAP39 Missense_Mutation p.R686C 0.54 tolerated(0.07) probably_damaging(1) TCGA-VQ-A91D-01 8 163555 163555 G A RPL23AP53 RNA 0.45 TCGA-VQ-A91D-01 8 19362968 19362968 C T CSGALNACT1 Silent p.S126S 0.31 TCGA-VQ-A91D-01 8 19363382 19363382 C T CSGALNACT1 5'UTR 0.39 TCGA-VQ-A91D-01 8 19796975 19796975 G A LPL Silent p.V8V 0.53 TCGA-VQ-A91D-01 8 19811713 19811713 C G LPL Silent p.V208V 0.30 TCGA-VQ-A91D-01 8 20004794 20004794 C T SLC18A1 Missense_Mutation p.S480N 0.30 tolerated(1) benign(0.032) TCGA-VQ-A91D-01 8 20112665 20112665 C T LZTS1 Missense_Mutation p.G10S 0.16 tolerated(0.05) possibly_damaging(0.706) TCGA-VQ-A91D-01 8 21927837 21927837 C T DMTN Missense_Mutation p.A199V 0.36 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91D-01 8 22213033 22213033 G A PIWIL2 3'UTR 0.32 TCGA-VQ-A91D-01 8 22428690 22428690 A G SORBS3 Missense_Mutation p.T567A 0.15 tolerated(0.19) benign(0.005) TCGA-VQ-A91D-01 8 22547938 22547938 A C EGR3 3'UTR 0.38 TCGA-VQ-A91D-01 8 24199261 24199261 C T ADAM28 Silent p.G607G 0.31 TCGA-VQ-A91D-01 8 24775763 24775763 G T NEFM Missense_Mutation p.D799Y 0.45 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-VQ-A91D-01 8 25280755 25280755 C T GNRH1 Missense_Mutation p.R31H 0.28 deleterious(0) probably_damaging(0.991) TCGA-VQ-A91D-01 8 26365436 26365436 G A PNMA2 Missense_Mutation p.A279V 0.29 tolerated(0.15) possibly_damaging(0.869) TCGA-VQ-A91D-01 8 27145295 27145295 C T TRIM35 Silent p.S418S 0.47 TCGA-VQ-A91D-01 8 27312110 27312110 G A PTK2B Silent p.P932P 0.31 TCGA-VQ-A91D-01 8 27462724 27462724 G A CLU Silent p.R182R 0.36 TCGA-VQ-A91D-01 8 29013284 29013284 C T KIF13B Silent p.T498T 0.43 TCGA-VQ-A91D-01 8 33346614 33346614 A G MAK16 Missense_Mutation p.T117A 0.31 deleterious(0.03) probably_damaging(0.949) TCGA-VQ-A91D-01 8 33406262 33406262 C T RNF122 3'UTR 0.33 TCGA-VQ-A91D-01 8 38912035 38912035 C A ADAM9 Silent p.T446T 0.35 TCGA-VQ-A91D-01 8 48691639 48691639 C T PRKDC Silent p.P3834P 0.32 TCGA-VQ-A91D-01 8 48772195 48772195 C T PRKDC Missense_Mutation p.A2061T 0.23 benign(0) TCGA-VQ-A91D-01 8 48842439 48842439 T C PRKDC Missense_Mutation p.N676D 0.27 possibly_damaging(0.609) TCGA-VQ-A91D-01 8 49643104 49643105 - T EFCAB1 Frame_Shift_Ins p.M105Nfs*6 0.34 TCGA-VQ-A91D-01 8 51617198 51617198 C T SNTG1 Silent p.T359T 0.28 TCGA-VQ-A91D-01 8 53569327 53569327 T G RB1CC1 Missense_Mutation p.N1021T 0.39 deleterious_low_confidence(0.01) benign(0.146) TCGA-VQ-A91D-01 8 54163396 54163396 C T OPRK1 Missense_Mutation p.V68I 0.40 tolerated(0.48) benign(0.006) TCGA-VQ-A91D-01 8 54900680 54900680 T A TCEA1 Missense_Mutation p.T154S 0.30 tolerated(0.13) benign(0.06) TCGA-VQ-A91D-01 8 55371942 55371942 C T SOX17 Missense_Mutation p.A211V 0.55 deleterious(0.01) benign(0.11) TCGA-VQ-A91D-01 8 55540025 55540025 G A RP1 Missense_Mutation p.G1195R 0.28 deleterious(0.04) probably_damaging(0.951) TCGA-VQ-A91D-01 8 57026162 57026162 G A MOS Missense_Mutation p.T127M 0.35 deleterious(0.04) probably_damaging(0.982) TCGA-VQ-A91D-01 8 64100297 64100297 G A YTHDF3 Missense_Mutation p.M575I 0.33 tolerated(0.42) benign(0) TCGA-VQ-A91D-01 8 67578361 67578364 ACAA - VCPIP1 Frame_Shift_Del p.F277Yfs*10 0.23 TCGA-VQ-A91D-01 8 70488249 70488249 G - SULF1 Frame_Shift_Del p.A75Pfs*8 0.36 TCGA-VQ-A91D-01 8 70981671 70981671 G T PRDM14 Missense_Mutation p.P142Q 0.30 tolerated(1) benign(0) TCGA-VQ-A91D-01 8 72981376 72981376 T G TRPA1 Missense_Mutation p.N109T 0.41 tolerated(0.07) probably_damaging(0.957) TCGA-VQ-A91D-01 8 73480397 73480397 A - KCNB2 Frame_Shift_Del p.E146Nfs*3 0.30 TCGA-VQ-A91D-01 8 73849109 73849109 T C KCNB2 Missense_Mutation p.S507P 0.08 tolerated(0.13) benign(0.159) TCGA-VQ-A91D-01 8 75276676 75276676 G A GDAP1 3'UTR 0.20 TCGA-VQ-A91D-01 8 75737428 75737428 A G PI15 Intron 0.07 TCGA-VQ-A91D-01 8 75898386 75898386 G - CRISPLD1 Frame_Shift_Del p.A56Pfs*31 0.31 TCGA-VQ-A91D-01 8 80915347 80915347 A T MRPS28 Silent p.P94P 0.22 TCGA-VQ-A91D-01 8 8176052 8176052 T C SGK223 Missense_Mutation p.Y1278C 0.54 probably_damaging(0.998) TCGA-VQ-A91D-01 8 82715435 82715435 T G SNX16 Missense_Mutation p.N237T 0.12 tolerated(0.13) probably_damaging(0.936) TCGA-VQ-A91D-01 8 87242135 87242135 A - SLC7A13 Frame_Shift_Del p.S126Afs*20 0.33 TCGA-VQ-A91D-01 8 87917380 87917380 A - CNBD1 Frame_Shift_Del p.K78Nfs*34 0.27 TCGA-VQ-A91D-01 8 88886206 88886206 C T DCAF4L2 5'UTR 0.28 TCGA-VQ-A91D-01 8 89339326 89339326 G A MMP16 Missense_Mutation p.T37M 0.24 deleterious(0.03) benign(0.038) TCGA-VQ-A91D-01 8 93074898 93074898 G - RUNX1T1 Intron 0.21 TCGA-VQ-A91D-01 8 94767161 94767161 G C TMEM67 Missense_Mutation p.A7P 0.27 tolerated_low_confidence(0.19) benign(0.001) TCGA-VQ-A91D-01 8 95686611 95686611 A - ESRP1 Frame_Shift_Del p.N512Tfs*2 0.36 TCGA-VQ-A91D-01 8 95848830 95848830 T - INTS8 Frame_Shift_Del p.F279Lfs*6 0.32 TCGA-VQ-A91D-01 8 99170503 99170503 C T POP1 3'UTR 0.37 TCGA-VQ-A91D-01 8 99761545 99761545 C T STK3 Missense_Mutation p.A132T 0.31 deleterious(0.04) possibly_damaging(0.507) TCGA-VQ-A91D-01 9 100240722 100240722 T C TDRD7 Missense_Mutation p.I723T 0.39 deleterious(0) possibly_damaging(0.608) TCGA-VQ-A91D-01 9 101891250 101891250 T G TGFBR1 Missense_Mutation p.C71G 0.33 deleterious(0.03) probably_damaging(0.996) TCGA-VQ-A91D-01 9 103275602 103275602 A C TMEFF1 Silent p.G150G 0.09 TCGA-VQ-A91D-01 9 103348377 103348377 A G MURC Missense_Mutation p.R247G 0.38 deleterious(0.01) probably_damaging(0.996) TCGA-VQ-A91D-01 9 104079678 104079678 C T LPPR1 Missense_Mutation p.T282M 0.28 tolerated(0.12) benign(0.052) TCGA-VQ-A91D-01 9 112143964 112143964 G A PTPN3 Nonsense_Mutation p.R878* 0.32 TCGA-VQ-A91D-01 9 112705267 112705267 A G PALM2 Silent p.E266E 0.28 TCGA-VQ-A91D-01 9 112900478 112900478 G - PALM2-AKAP2 Frame_Shift_Del p.Q889Sfs*33 0.19 TCGA-VQ-A91D-01 9 116171195 116171195 T - POLE3 Frame_Shift_Del p.T114Qfs*32 0.27 TCGA-VQ-A91D-01 9 116811823 116811823 C T ZNF618 Silent p.I654I 0.43 TCGA-VQ-A91D-01 9 116938 116938 C T FOXD4 Silent p.A394A 0.24 TCGA-VQ-A91D-01 9 116984523 116984523 C - COL27A1 Frame_Shift_Del p.P816Lfs*10 0.27 TCGA-VQ-A91D-01 9 121929686 121929686 G A BRINP1 Silent p.D654D 0.35 TCGA-VQ-A91D-01 9 123580369 123580369 G A PSMD5 Missense_Mutation p.R444W 0.35 deleterious(0) probably_damaging(0.991) TCGA-VQ-A91D-01 9 123688322 123688322 G A TRAF1 Missense_Mutation p.P11L 0.27 tolerated_low_confidence(0.43) benign(0.001) TCGA-VQ-A91D-01 9 123954450 123954450 T - RAB14 Frame_Shift_Del p.K35Nfs*18 0.36 TCGA-VQ-A91D-01 9 125033201 125033201 G A MRRF Missense_Mutation p.V11I 0.44 tolerated(0.23) benign(0.003) TCGA-VQ-A91D-01 9 128000509 128000509 G T HSPA5 Missense_Mutation p.P438Q 0.28 deleterious_low_confidence(0.02) benign(0.128) TCGA-VQ-A91D-01 9 128064750 128064750 G T GAPVD1 Missense_Mutation p.R225M 0.44 deleterious(0) probably_damaging(0.946) TCGA-VQ-A91D-01 9 130104510 130104510 A - GARNL3 Frame_Shift_Del p.A385Pfs*19 0.25 TCGA-VQ-A91D-01 9 130293979 130293979 C T FAM129B Missense_Mutation p.R45H 0.33 tolerated(0.05) probably_damaging(0.997) TCGA-VQ-A91D-01 9 130495628 130495628 C - TOR2A Intron 0.33 TCGA-VQ-A91D-01 9 130716131 130716131 C T FAM102A Missense_Mutation p.A74T 0.41 tolerated(0.83) benign(0.01) TCGA-VQ-A91D-01 9 131028133 131028133 C T GOLGA2 Missense_Mutation p.V227I 0.28 tolerated(0.09) possibly_damaging(0.866) TCGA-VQ-A91D-01 9 131105564 131105564 C T SLC27A4 Silent p.R51R 0.40 TCGA-VQ-A91D-01 9 13122136 13122138 CTT - MPDZ In_Frame_Del p.E1662del 0.34 TCGA-VQ-A91D-01 9 131696298 131696298 C A PHYHD1 Missense_Mutation p.L93M 0.39 deleterious(0.01) probably_damaging(0.933) TCGA-VQ-A91D-01 9 131703787 131703787 C T RP11-101E3.5 Missense_Mutation p.S11L 0.28 deleterious_low_confidence(0) possibly_damaging(0.514) TCGA-VQ-A91D-01 9 131864814 131864814 C - CRAT Frame_Shift_Del p.K166Sfs*5 0.26 TCGA-VQ-A91D-01 9 133355119 133355119 G A ASS1 Silent p.V235V 0.06 TCGA-VQ-A91D-01 9 133506076 133506076 C - FUBP3 Frame_Shift_Del p.P395Lfs*27 0.22 TCGA-VQ-A91D-01 9 133542101 133542101 G A PRDM12 Silent p.A110A 0.36 TCGA-VQ-A91D-01 9 133753871 133753871 A C ABL1 Missense_Mutation p.Q466P 0.30 deleterious(0) probably_damaging(0.996) TCGA-VQ-A91D-01 9 133932462 133932462 C T LAMC3 Missense_Mutation p.P696S 0.31 deleterious(0.02) possibly_damaging(0.856) TCGA-VQ-A91D-01 9 135201943 135201943 T A SETX Missense_Mutation p.Y1681F 0.26 tolerated(0.68) benign(0.001) TCGA-VQ-A91D-01 9 135277008 135277008 G A TTF1 Nonsense_Mutation p.R401* 0.33 TCGA-VQ-A91D-01 9 135412988 135412988 G A C9orf171 Silent p.R211R 0.19 TCGA-VQ-A91D-01 9 135458126 135458126 G A BARHL1 5'UTR 0.42 TCGA-VQ-A91D-01 9 135906484 135906484 A G GTF3C5 Missense_Mutation p.Y29C 0.32 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 9 135975778 135975778 C T RALGDS Intron 0.31 TCGA-VQ-A91D-01 9 136270536 136270536 A G C9orf96 Silent p.G678G 0.30 TCGA-VQ-A91D-01 9 136272944 136272944 G A REXO4 Missense_Mutation p.A379V 0.29 deleterious(0.01) possibly_damaging(0.509) TCGA-VQ-A91D-01 9 136290648 136290648 G - ADAMTS13 Splice_Site p.X112_splice 0.30 TCGA-VQ-A91D-01 9 136295078 136295078 G A ADAMTS13 Missense_Mutation p.V282M 0.25 tolerated(0.23) benign(0.393) TCGA-VQ-A91D-01 9 137021631 137021631 A T WDR5 Missense_Mutation p.I274F 0.32 deleterious(0) probably_damaging(0.99) TCGA-VQ-A91D-01 9 137801798 137801798 C A FCN1 Missense_Mutation p.G276V 0.39 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 9 137967508 137967508 T G OLFM1 5'UTR 0.60 TCGA-VQ-A91D-01 9 138378381 138378381 C T PPP1R26 Silent p.D675D 0.37 TCGA-VQ-A91D-01 9 138712841 138712841 G A CAMSAP1 Silent p.P1222P 0.41 TCGA-VQ-A91D-01 9 139264835 139264835 G A CARD9 Missense_Mutation p.R288W 0.19 deleterious(0) possibly_damaging(0.88) TCGA-VQ-A91D-01 9 139298556 139298556 C T SDCCAG3 Missense_Mutation p.A387T 0.33 deleterious(0.01) probably_damaging(0.979) TCGA-VQ-A91D-01 9 139345823 139345823 G - SEC16A Frame_Shift_Del p.P2066Qfs*76 0.28 TCGA-VQ-A91D-01 9 139357378 139357378 G A SEC16A Silent p.T1618T 0.25 TCGA-VQ-A91D-01 9 139369876 139369876 A G SEC16A Missense_Mutation p.L731P 0.17 tolerated(0.13) probably_damaging(0.999) TCGA-VQ-A91D-01 9 139396224 139396224 T C NOTCH1 Missense_Mutation p.M1872V 0.15 tolerated(0.19) benign(0.004) TCGA-VQ-A91D-01 9 139399461 139399461 C T NOTCH1 Missense_Mutation p.C1561Y 0.25 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 9 139404306 139404306 C T NOTCH1 Missense_Mutation p.A950T 0.29 tolerated(0.35) possibly_damaging(0.755) TCGA-VQ-A91D-01 9 139409054 139409054 G - NOTCH1 Frame_Shift_Del p.E706Rfs*66 0.41 TCGA-VQ-A91D-01 9 139908628 139908628 C T ABCA2 Missense_Mutation p.S1411N 0.21 tolerated(0.09) possibly_damaging(0.71) TCGA-VQ-A91D-01 9 139995516 139995516 G A MAN1B1 Missense_Mutation p.V326I 0.23 deleterious(0.02) possibly_damaging(0.824) TCGA-VQ-A91D-01 9 140086680 140086680 C - TPRN Intron 0.25 TCGA-VQ-A91D-01 9 140328664 140328665 - C NOXA1 Frame_Shift_Ins p.L437Pfs*13 0.27 TCGA-VQ-A91D-01 9 140477125 140477125 T C ZMYND19 Missense_Mutation p.N185S 0.36 tolerated(0.97) benign(0.383) TCGA-VQ-A91D-01 9 140611221 140611221 G A EHMT1 Missense_Mutation p.A77T 0.33 tolerated_low_confidence(1) benign(0.001) TCGA-VQ-A91D-01 9 140710436 140710436 C T EHMT1 Missense_Mutation p.P1099L 0.45 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 9 140711914 140711914 C T EHMT1 Missense_Mutation p.T1133M 0.40 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 9 140777406 140777406 C T CACNA1B Intron 0.15 TCGA-VQ-A91D-01 9 140953049 140953049 C T CACNA1B Missense_Mutation p.A1446V 0.37 deleterious(0.01) probably_damaging(0.99) TCGA-VQ-A91D-01 9 16419380 16419380 C T BNC2 Silent p.Q969Q 0.16 TCGA-VQ-A91D-01 9 17409396 17409396 T C CNTLN Silent p.D907D 0.32 TCGA-VQ-A91D-01 9 18777464 18777464 C T ADAMTSL1 Silent p.D1079D 0.45 TCGA-VQ-A91D-01 9 18889746 18889746 G A ADAMTSL1 Missense_Mutation p.R1548Q 0.40 tolerated(0.15) probably_damaging(0.988) TCGA-VQ-A91D-01 9 20363530 20363530 G A MLLT3 Silent p.N425N 0.22 TCGA-VQ-A91D-01 9 20976531 20976531 T C FOCAD Silent p.L1415L 0.05 TCGA-VQ-A91D-01 9 21971193 21971193 G A CDKN2A Silent p.G55G 0.38 TCGA-VQ-A91D-01 9 21974716 21974716 C T CDKN2A Silent p.L37L 0.42 TCGA-VQ-A91D-01 9 2653967 2653967 G A VLDLR 3'UTR 0.18 TCGA-VQ-A91D-01 9 2717723 2717723 G A KCNV2 5'UTR 0.24 TCGA-VQ-A91D-01 9 32457363 32457363 T C DDX58 Silent p.R845R 0.31 TCGA-VQ-A91D-01 9 3247916 3247916 C A RFX3 Intron 0.33 TCGA-VQ-A91D-01 9 32633437 32633437 C A TAF1L Missense_Mutation p.G714V 0.30 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 9 33246697 33246697 G A SPINK4 Silent p.T62T 0.25 TCGA-VQ-A91D-01 9 34371920 34371920 C T KIAA1161 Missense_Mutation p.R307H 0.28 tolerated(0.2) possibly_damaging(0.759) TCGA-VQ-A91D-01 9 34627740 34627740 G - ARID3C Frame_Shift_Del p.P91Lfs*44 0.25 TCGA-VQ-A91D-01 9 35042893 35042893 T C C9orf131 Silent p.D89D 0.11 TCGA-VQ-A91D-01 9 35043650 35043650 C - C9orf131 Frame_Shift_Del p.C344Afs*49 0.27 TCGA-VQ-A91D-01 9 35607336 35607336 C T TESK1 Nonsense_Mutation p.R184* 0.26 TCGA-VQ-A91D-01 9 37020769 37020769 C - PAX5 Frame_Shift_Del p.V26Ffs*3 0.27 TCGA-VQ-A91D-01 9 37740477 37740477 A G FRMPD1 Missense_Mutation p.E651G 0.33 deleterious(0.04) benign(0.008) TCGA-VQ-A91D-01 9 37740495 37740495 G A FRMPD1 Missense_Mutation p.C657Y 0.37 deleterious(0.03) benign(0.06) TCGA-VQ-A91D-01 9 37842169 37842169 T C DCAF10 Missense_Mutation p.V246A 0.14 deleterious(0.01) benign(0.04) TCGA-VQ-A91D-01 9 37888047 37888047 A G SLC25A51 Silent p.H167H 0.37 TCGA-VQ-A91D-01 9 38396493 38396493 G A ALDH1B1 Missense_Mutation p.A250T 0.21 tolerated(0.13) benign(0.018) TCGA-VQ-A91D-01 9 38414176 38414176 C T IGFBPL1 Missense_Mutation p.R162Q 0.46 tolerated(0.37) benign(0.027) TCGA-VQ-A91D-01 9 5968162 5968162 T - KIAA2026 Frame_Shift_Del p.K690Rfs*3 0.35 TCGA-VQ-A91D-01 9 69200180 69200180 G A FOXD4L6 3'UTR 0.30 TCGA-VQ-A91D-01 9 73213399 73213399 C T TRPM3 Missense_Mutation p.R983H 0.33 deleterious(0.04) probably_damaging(0.998) TCGA-VQ-A91D-01 9 73233934 73233934 G A TRPM3 Missense_Mutation p.T724M 0.14 deleterious(0) probably_damaging(0.991) TCGA-VQ-A91D-01 9 74309437 74309437 C T TMEM2 Silent p.P1228P 0.33 TCGA-VQ-A91D-01 9 74347372 74347372 T C TMEM2 Silent p.G486G 0.38 TCGA-VQ-A91D-01 9 74354995 74354995 A G TMEM2 Silent p.Y396Y 0.11 TCGA-VQ-A91D-01 9 74863197 74863197 G A GDA Missense_Mutation p.R435Q 0.34 deleterious(0.03) probably_damaging(0.994) TCGA-VQ-A91D-01 9 79320607 79320607 T C PRUNE2 Missense_Mutation p.I2195V 0.29 tolerated(0.29) benign(0.006) TCGA-VQ-A91D-01 9 79324131 79324131 C T PRUNE2 Missense_Mutation p.R1020Q 0.27 deleterious(0.01) possibly_damaging(0.76) TCGA-VQ-A91D-01 9 79952243 79952243 A - VPS13A Frame_Shift_Del p.N2058Mfs*6 0.23 TCGA-VQ-A91D-01 9 82336772 82336772 G A TLE4 Missense_Mutation p.R652Q 0.32 deleterious(0.01) benign(0.415) TCGA-VQ-A91D-01 9 8449774 8449774 G A PTPRD Silent p.H1313H 0.38 TCGA-VQ-A91D-01 9 84562502 84562502 A - RP11-383M4.6 Intron 0.12 TCGA-VQ-A91D-01 9 87285802 87285802 G A NTRK2 Missense_Mutation p.D47N 0.38 tolerated(0.21) benign(0.002) TCGA-VQ-A91D-01 9 88844526 88844526 G T C9orf153 5'UTR 0.53 TCGA-VQ-A91D-01 9 88937851 88937851 A T ZCCHC6 Missense_Mutation p.N938K 0.22 deleterious(0.04) benign(0.002) TCGA-VQ-A91D-01 9 90283537 90283537 C T DAPK1 Missense_Mutation p.A650V 0.07 deleterious(0.01) possibly_damaging(0.907) TCGA-VQ-A91D-01 9 90313696 90313696 G C DAPK1 Missense_Mutation p.E913Q 0.25 tolerated(0.28) benign(0.013) TCGA-VQ-A91D-01 9 90499530 90499530 T A SPATA31E1 Missense_Mutation p.L130Q 0.38 deleterious(0) probably_damaging(0.991) TCGA-VQ-A91D-01 9 91607001 91607001 G A C9orf47 3'UTR 0.21 TCGA-VQ-A91D-01 9 92011665 92011665 G T SEMA4D Missense_Mutation p.A134D 0.37 tolerated(0.06) possibly_damaging(0.725) TCGA-VQ-A91D-01 9 94172197 94172197 T C NFIL3 Missense_Mutation p.T274A 0.32 tolerated(0.19) probably_damaging(0.978) TCGA-VQ-A91D-01 9 95051646 95051646 A C IARS Missense_Mutation p.L19W 0.23 deleterious(0) probably_damaging(0.997) TCGA-VQ-A91D-01 9 95277121 95277121 A G ECM2 Silent p.G282G 0.46 TCGA-VQ-A91D-01 9 95285118 95285119 - A ECM2 Frame_Shift_Ins p.L11Sfs*8 0.29 TCGA-VQ-A91D-01 9 95373632 95373632 C G CENPP Missense_Mutation p.P201A 0.26 tolerated(1) possibly_damaging(0.822) TCGA-VQ-A91D-01 9 95397512 95397512 A G IPPK Missense_Mutation p.L332P 0.32 tolerated(0.34) possibly_damaging(0.507) TCGA-VQ-A91D-01 9 95599163 95599163 G A ANKRD19P RNA 0.27 TCGA-VQ-A91D-01 9 95599229 95599229 C T ANKRD19P RNA 0.49 TCGA-VQ-A91D-01 9 96021234 96021234 C - WNK2 Frame_Shift_Del p.I804Sfs*35 0.24 TCGA-VQ-A91D-01 9 96051603 96051603 G A WNK2 Missense_Mutation p.V1560I 0.29 unknown(0) TCGA-VQ-A91D-01 9 96051635 96051635 G A WNK2 Silent p.S1570S 0.37 TCGA-VQ-A91D-01 9 96080443 96080443 A - WNK2 3'UTR 0.50 TCGA-VQ-A91D-01 9 97062941 97062941 A T ZNF169 Silent p.S367S 0.35 TCGA-VQ-A91D-01 9 97888841 97888841 G T FANCC Missense_Mutation p.A289D 0.23 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 9 98231295 98231295 T C PTCH1 Missense_Mutation p.Q663R 0.39 deleterious(0.03) probably_damaging(0.988) TCGA-VQ-A91D-01 9 99150617 99150618 CT - ZNF367 Frame_Shift_Del p.A320Pfs*48 0.15 TCGA-VQ-A91D-01 9 99581998 99581998 G A ZNF782 Nonsense_Mutation p.Q103* 0.41 TCGA-VQ-A91D-01 X 100333900 100333900 C - TMEM35 5'UTR 0.39 TCGA-VQ-A91D-01 X 100503269 100503270 - T DRP2 Frame_Shift_Ins p.D484* 0.40 TCGA-VQ-A91D-01 X 100630233 100630233 A T BTK Missense_Mutation p.S14T 0.25 deleterious(0) probably_damaging(0.981) TCGA-VQ-A91D-01 X 10181939 10181939 G A CLCN4 Missense_Mutation p.V599I 0.17 tolerated(0.12) benign(0.191) TCGA-VQ-A91D-01 X 10182117 10182117 T C CLCN4 Missense_Mutation p.I658T 0.67 deleterious(0) probably_damaging(0.992) TCGA-VQ-A91D-01 X 101971259 101971259 C - GPRASP2 Frame_Shift_Del p.Q489Kfs*103 0.41 TCGA-VQ-A91D-01 X 107224372 107224372 A G TEX13B Missense_Mutation p.F293L 0.65 deleterious(0.02) benign(0.01) TCGA-VQ-A91D-01 X 107225310 107225310 G A TEX13B Silent p.N16N 0.70 TCGA-VQ-A91D-01 X 107320522 107320527 GAGCCA - VSIG1 In_Frame_Del p.P402_E403del 0.44 TCGA-VQ-A91D-01 X 107977383 107977383 C T IRS4 Missense_Mutation p.R731H 0.64 tolerated(0.52) unknown(0) TCGA-VQ-A91D-01 X 117032891 117032891 A T KLHL13 Missense_Mutation p.S653T 0.64 tolerated(0.3) probably_damaging(0.986) TCGA-VQ-A91D-01 X 118222370 118222370 G A KIAA1210 Silent p.S941S 0.68 TCGA-VQ-A91D-01 X 119048782 119048782 G A AKAP14 Missense_Mutation p.V128I 0.65 tolerated(1) benign(0.034) TCGA-VQ-A91D-01 X 120181542 120181542 T C GLUD2 Missense_Mutation p.Y2H 0.76 deleterious_low_confidence(0) benign(0.144) TCGA-VQ-A91D-01 X 123654410 123654410 G A TENM1 Silent p.T1086T 0.60 TCGA-VQ-A91D-01 X 123779075 123779075 A T TENM1 Missense_Mutation p.D598E 0.66 tolerated(0.07) benign(0.379) TCGA-VQ-A91D-01 X 125298923 125298923 C T DCAF12L2 Missense_Mutation p.V329I 0.67 tolerated(0.18) benign(0.058) TCGA-VQ-A91D-01 X 129190011 129190011 C - BCORL1 Frame_Shift_Del p.P1681Qfs*20 0.39 TCGA-VQ-A91D-01 X 129546425 129546425 G A RBMX2 Missense_Mutation p.R191H 0.63 tolerated(0.3) benign(0.003) TCGA-VQ-A91D-01 X 132161647 132161647 A G USP26 Missense_Mutation p.V201A 0.80 tolerated(0.09) benign(0.01) TCGA-VQ-A91D-01 X 132439923 132439923 G - GPC4 Frame_Shift_Del p.K345Sfs*49 0.39 TCGA-VQ-A91D-01 X 135404968 135404968 T - GPR112 Frame_Shift_Del p.F36Lfs*8 0.43 TCGA-VQ-A91D-01 X 135427956 135427956 C T GPR112 Silent p.S697S 0.70 TCGA-VQ-A91D-01 X 1428339 1428339 C T CSF2RA Silent p.R424R 0.06 TCGA-VQ-A91D-01 X 151821198 151821198 C T GABRQ Silent p.S451S 0.64 TCGA-VQ-A91D-01 X 151935220 151935220 A T MAGEA3 3'UTR 0.15 TCGA-VQ-A91D-01 X 152815740 152815740 A - ATP2B3 Frame_Shift_Del p.K608Sfs*6 0.41 TCGA-VQ-A91D-01 X 152936621 152936621 G A PNCK Silent p.Y296Y 0.67 TCGA-VQ-A91D-01 X 153048551 153048551 G A SRPK3 Silent p.A242A 0.73 TCGA-VQ-A91D-01 X 153282430 153282430 C T IRAK1 Missense_Mutation p.S333N 0.08 tolerated(0.17) benign(0.013) TCGA-VQ-A91D-01 X 153296071 153296071 G - MECP2 Frame_Shift_Del p.P415Lfs*6 0.13 TCGA-VQ-A91D-01 X 153628678 153628678 G T RPL10 Intron 0.81 TCGA-VQ-A91D-01 X 153761260 153761260 G A G6PD Silent p.G346G 0.62 TCGA-VQ-A91D-01 X 1546883 1546883 G A ASMTL Missense_Mutation p.P214L 0.33 deleterious(0.01) possibly_damaging(0.611) TCGA-VQ-A91D-01 X 155234158 155234158 T C IL9R Silent p.S169S 0.25 TCGA-VQ-A91D-01 X 155239531 155239531 T C IL9R Silent p.A341A 0.51 TCGA-VQ-A91D-01 X 1734137 1734137 C T ASMT Silent p.Y15Y 0.13 TCGA-VQ-A91D-01 X 19418712 19418712 G A MAP3K15 Silent p.T638T 0.74 TCGA-VQ-A91D-01 X 20173535 20173536 - T RPS6KA3 Frame_Shift_Ins p.I735Nfs*9 0.49 TCGA-VQ-A91D-01 X 21996169 21996169 T G SMS Silent p.G199G 0.29 TCGA-VQ-A91D-01 X 22292316 22292316 G A ZNF645 Missense_Mutation p.R403Q 0.63 tolerated(1) unknown(0) TCGA-VQ-A91D-01 X 229477 229477 C A GTPBP6 Missense_Mutation p.R62M 0.42 deleterious(0) probably_damaging(0.928) TCGA-VQ-A91D-01 X 23722828 23722828 A - ACOT9 Frame_Shift_Del p.F414Sfs*12 0.41 TCGA-VQ-A91D-01 X 2407116 2407116 C T ZBED1 Missense_Mutation p.A549T 0.35 tolerated(0.07) probably_damaging(0.982) TCGA-VQ-A91D-01 X 26212517 26212517 T C MAGEB6 Missense_Mutation p.I185T 0.67 tolerated(0.76) benign(0.012) TCGA-VQ-A91D-01 X 30269268 30269268 A T MAGEB1 Missense_Mutation p.I220F 0.55 deleterious(0) probably_damaging(0.965) TCGA-VQ-A91D-01 X 3235307 3235307 C T MXRA5 Missense_Mutation p.V2139M 0.63 deleterious(0) probably_damaging(0.998) TCGA-VQ-A91D-01 X 3235540 3235540 G A MXRA5 Missense_Mutation p.P2061L 0.55 tolerated(0.98) possibly_damaging(0.464) TCGA-VQ-A91D-01 X 34962803 34962803 G A FAM47B Missense_Mutation p.D619N 0.14 deleterious(0) probably_damaging(0.977) TCGA-VQ-A91D-01 X 35938098 35938098 C T CXorf22 Missense_Mutation p.P61L 0.74 tolerated(0.06) possibly_damaging(0.903) TCGA-VQ-A91D-01 X 37027057 37027057 G A FAM47C Missense_Mutation p.E192K 0.71 tolerated(0.17) possibly_damaging(0.742) TCGA-VQ-A91D-01 X 37663368 37663368 C T CYBB Missense_Mutation p.A379V 0.61 tolerated(0.41) possibly_damaging(0.581) TCGA-VQ-A91D-01 X 39932085 39932085 G - BCOR Frame_Shift_Del p.K839Sfs*17 0.42 TCGA-VQ-A91D-01 X 47102035 47102035 C T USP11 Missense_Mutation p.A543V 0.59 deleterious(0) possibly_damaging(0.7) TCGA-VQ-A91D-01 X 48374460 48374460 C T PORCN Missense_Mutation p.R367C 0.59 tolerated(0.05) benign(0.382) TCGA-VQ-A91D-01 X 48457799 48457799 G T WDR13 Missense_Mutation p.R114I 0.50 tolerated(0.25) benign(0.218) TCGA-VQ-A91D-01 X 48558984 48558984 A G SUV39H1 Missense_Mutation p.N223S 0.60 deleterious(0) probably_damaging(0.974) TCGA-VQ-A91D-01 X 49143521 49143521 C T PPP1R3F Missense_Mutation p.A790V 0.57 tolerated_low_confidence(0.41) benign(0.01) TCGA-VQ-A91D-01 X 50094628 50094628 A G CCNB3 Missense_Mutation p.I1372V 0.45 deleterious(0) benign(0.326) TCGA-VQ-A91D-01 X 53172232 53172232 C T LINC01155 RNA 0.57 TCGA-VQ-A91D-01 X 53280309 53280309 C T IQSEC2 Silent p.P483P 0.76 TCGA-VQ-A91D-01 X 53629579 53629579 T C HUWE1 Missense_Mutation p.K973E 0.62 possibly_damaging(0.889) TCGA-VQ-A91D-01 X 5811224 5811224 C T NLGN4X Silent p.A695A 0.68 TCGA-VQ-A91D-01 X 63406005 63406005 T C AMER1 3'UTR 0.63 TCGA-VQ-A91D-01 X 68382933 68382933 G A PJA1 Missense_Mutation p.T50M 0.67 tolerated(0.09) probably_damaging(0.943) TCGA-VQ-A91D-01 X 70471074 70471074 C T ZMYM3 Silent p.R244R 0.50 TCGA-VQ-A91D-01 X 70598783 70598783 A T TAF1 Missense_Mutation p.D441V 0.15 deleterious(0) probably_damaging(0.991) TCGA-VQ-A91D-01 X 70775095 70775095 C T OGT Missense_Mutation p.H262Y 0.13 tolerated(0.44) probably_damaging(0.991) TCGA-VQ-A91D-01 X 7175363 7175363 G A STS Missense_Mutation p.S78N 0.70 deleterious(0) probably_damaging(0.985) TCGA-VQ-A91D-01 X 72434208 72434208 G A NAP1L2 Missense_Mutation p.L41F 0.64 tolerated_low_confidence(0.18) benign(0.001) TCGA-VQ-A91D-01 X 74517458 74517458 G T UPRT Intron 0.57 TCGA-VQ-A91D-01 X 75648329 75648329 T G MAGEE1 Silent p.S2S 0.79 TCGA-VQ-A91D-01 X 75649649 75649649 C T MAGEE1 Silent p.S442S 0.67 TCGA-VQ-A91D-01 X 77271282 77271282 C T ATP7A Missense_Mutation p.R844C 0.63 deleterious(0) probably_damaging(1) TCGA-VQ-A91D-01 X 79965024 79965024 C T BRWD3 Missense_Mutation p.R793H 0.73 tolerated(0.08) benign(0.045) TCGA-VQ-A91D-01 X 8764320 8764320 T - FAM9A Frame_Shift_Del p.K159Nfs*3 0.50 TCGA-VQ-A91D-01 X 91873545 91873545 C T PCDH11X Missense_Mutation p.S1217F 0.12 deleterious_low_confidence(0.02) benign(0.282) TCGA-VQ-A91D-01 X 99662959 99662959 C T PCDH19 Missense_Mutation p.G213S 0.68 deleterious(0.01) probably_damaging(1) TCGA-VQ-A91D-01 Y 21869563 21869563 C T KDM5D Missense_Mutation p.A1157T 0.73 tolerated(0.1) benign(0.003) TCGA-VQ-A91D-01 Y 21877617 21877617 T C KDM5D Missense_Mutation p.Y741C 0.09 deleterious(0) probably_damaging(0.997) TCGA-VQ-A91E-01 10 100143499 100143499 G T PYROXD2 3'UTR 0.19 TCGA-VQ-A91E-01 10 101157393 101157393 T C GOT1 Missense_Mutation p.S385G 0.10 deleterious(0.02) possibly_damaging(0.849) TCGA-VQ-A91E-01 10 101163272 101163272 G A GOT1 Nonsense_Mutation p.R305* 0.07 TCGA-VQ-A91E-01 10 102689716 102689716 T C FAM178A Silent p.G765G 0.14 TCGA-VQ-A91E-01 10 102798945 102798946 - C SFXN3 Frame_Shift_Ins p.L285Pfs*27 0.14 TCGA-VQ-A91E-01 10 102822754 102822754 C T KAZALD1 Silent p.C135C 0.18 TCGA-VQ-A91E-01 10 103989102 103989102 A G ELOVL3 3'UTR 0.25 TCGA-VQ-A91E-01 10 104416903 104416903 G A TRIM8 Missense_Mutation p.G483D 0.11 deleterious_low_confidence(0) benign(0.155) TCGA-VQ-A91E-01 10 105642432 105642432 G A OBFC1 3'UTR 0.11 TCGA-VQ-A91E-01 10 106074609 106074609 C T ITPRIP Missense_Mutation p.E401K 0.15 tolerated(0.25) benign(0.313) TCGA-VQ-A91E-01 10 115489357 115489357 T - CASP7 3'UTR 0.13 TCGA-VQ-A91E-01 10 115515071 115515071 G A PLEKHS1 Intron 0.15 TCGA-VQ-A91E-01 10 116060074 116060074 G A AFAP1L2 Silent p.T612T 0.13 TCGA-VQ-A91E-01 10 119805487 119805487 T C RAB11FIP2 Missense_Mutation p.E63G 0.22 deleterious(0) probably_damaging(0.996) TCGA-VQ-A91E-01 10 121436421 121436421 T C BAG3 Missense_Mutation p.L452P 0.12 deleterious(0) unknown(0) TCGA-VQ-A91E-01 10 121689274 121689274 G A SEC23IP Silent p.P823P 0.07 TCGA-VQ-A91E-01 10 123988890 123988890 T C TACC2 Silent p.A2642A 0.15 TCGA-VQ-A91E-01 10 124066813 124066813 T - BTBD16 Frame_Shift_Del p.F302Lfs*15 0.14 TCGA-VQ-A91E-01 10 124091966 124091966 G A BTBD16 Missense_Mutation p.D368N 0.12 tolerated(0.1) benign(0.263) TCGA-VQ-A91E-01 10 124753842 124753842 G A IKZF5 Silent p.G238G 0.16 TCGA-VQ-A91E-01 10 124908107 124908107 C T HMX2 Silent p.H71H 0.16 TCGA-VQ-A91E-01 10 125514271 125514271 C T CPXM2 Missense_Mutation p.R642H 0.07 deleterious(0.04) probably_damaging(0.999) TCGA-VQ-A91E-01 10 134017335 134017335 A G DPYSL4 Missense_Mutation p.K511E 0.11 tolerated(0.07) possibly_damaging(0.493) TCGA-VQ-A91E-01 10 134230608 134230608 T A PWWP2B 3'UTR 0.10 TCGA-VQ-A91E-01 10 134912161 134912161 G A GPR123 Missense_Mutation p.R50H 0.13 deleterious(0.01) benign(0.064) TCGA-VQ-A91E-01 10 135083999 135083999 G A ADAM8 Silent p.G550G 0.16 TCGA-VQ-A91E-01 10 27499782 27499782 C T ACBD5 Missense_Mutation p.G389R 0.10 tolerated(0.07) probably_damaging(0.972) TCGA-VQ-A91E-01 10 27539218 27539218 C T RP11-85G18.6 RNA 0.08 TCGA-VQ-A91E-01 10 27702951 27702951 G - PTCHD3 Frame_Shift_Del p.R77Gfs*43 0.23 TCGA-VQ-A91E-01 10 30318330 30318330 T C KIAA1462 Silent p.P249P 0.10 TCGA-VQ-A91E-01 10 30901758 30901758 T C LYZL2 Missense_Mutation p.N170D 0.09 tolerated(0.37) benign(0.038) TCGA-VQ-A91E-01 10 48388537 48388537 C T RBP3 Missense_Mutation p.D781N 0.12 deleterious(0.02) possibly_damaging(0.831) TCGA-VQ-A91E-01 10 50723436 50723436 A G ERCC6-PGBD3 Silent p.C1043C 0.11 TCGA-VQ-A91E-01 10 50724511 50724511 A G ERCC6-PGBD3 Missense_Mutation p.M685T 0.09 deleterious_low_confidence(0) unknown(0) TCGA-VQ-A91E-01 10 52570887 52570887 T C A1CF Missense_Mutation p.Q466R 0.09 tolerated(0.11) probably_damaging(0.995) TCGA-VQ-A91E-01 10 5471169 5471169 A G NET1 Missense_Mutation p.S78G 0.14 deleterious(0) probably_damaging(0.993) TCGA-VQ-A91E-01 10 55616982 55616982 G T PCDH15 Silent p.S1253S 0.11 TCGA-VQ-A91E-01 10 55839182 55839182 G A PCDH15 Missense_Mutation p.T667M 0.14 deleterious(0) probably_damaging(0.91) TCGA-VQ-A91E-01 10 61819570 61819570 C T ANK3 Intron 0.08 TCGA-VQ-A91E-01 10 61894106 61894106 A G ANK3 Missense_Mutation p.S922P 0.26 possibly_damaging(0.897) TCGA-VQ-A91E-01 10 63852117 63852118 - A ARID5B Frame_Shift_Ins p.Y968Ifs*3 0.14 TCGA-VQ-A91E-01 10 69750057 69750057 A G HERC4 Missense_Mutation p.L515P 0.16 tolerated(0.31) benign(0.006) TCGA-VQ-A91E-01 10 70748635 70748635 C T KIAA1279 Missense_Mutation p.A16V 0.11 deleterious(0.05) benign(0.19) TCGA-VQ-A91E-01 10 70856966 70856966 G A SRGN Missense_Mutation p.R69H 0.07 deleterious(0.03) benign(0.002) TCGA-VQ-A91E-01 10 71128383 71128383 G A HK1 Missense_Mutation p.R200Q 0.10 tolerated(0.38) benign(0.054) TCGA-VQ-A91E-01 10 73050750 73050750 C T UNC5B Missense_Mutation p.A393V 0.12 tolerated(1) benign(0.003) TCGA-VQ-A91E-01 10 75138763 75138763 C T ANXA7 Missense_Mutation p.R417H 0.08 tolerated(0.13) benign(0.016) TCGA-VQ-A91E-01 10 75276986 75276986 A G USP54 Silent p.L1066L 0.16 TCGA-VQ-A91E-01 10 75864996 75864996 T C VCL Silent p.N773N 0.08 TCGA-VQ-A91E-01 10 76735541 76735541 T C KAT6B Silent p.G482G 0.12 TCGA-VQ-A91E-01 10 81318657 81318657 C T SFTPA2 Missense_Mutation p.E93K 0.15 deleterious(0.02) benign(0.439) TCGA-VQ-A91E-01 10 87362407 87362407 C T GRID1 Missense_Mutation p.D885N 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.772) TCGA-VQ-A91E-01 10 89312090 89312090 A - MINPP1 Frame_Shift_Del p.K441Rfs*18 0.20 TCGA-VQ-A91E-01 10 95163969 95163969 A - MYOF Frame_Shift_Del p.F246Sfs*6 0.15 TCGA-VQ-A91E-01 10 96353357 96353357 T C HELLS Silent p.I691I 0.10 TCGA-VQ-A91E-01 10 99211553 99211553 T C ZDHHC16 Missense_Mutation p.Y41H 0.12 deleterious(0.05) probably_damaging(0.984) TCGA-VQ-A91E-01 10 99504565 99504565 G A ZFYVE27 Silent p.R116R 0.13 TCGA-VQ-A91E-01 11 103058103 103058103 T C DYNC2H1 Missense_Mutation p.S2310P 0.12 probably_damaging(0.986) TCGA-VQ-A91E-01 11 107219767 107219767 A G CWF19L2 Silent p.L700L 0.17 TCGA-VQ-A91E-01 11 10800350 10800350 C T CTR9 Missense_Mutation p.R1074W 0.15 deleterious(0.02) possibly_damaging(0.689) TCGA-VQ-A91E-01 11 108201077 108201077 A G ATM Missense_Mutation p.M2482V 0.24 tolerated(0.16) benign(0.008) TCGA-VQ-A91E-01 11 113285150 113285151 AG - DRD2 Frame_Shift_Del p.C253Hfs*7 0.08 TCGA-VQ-A91E-01 11 117869520 117869520 T - IL10RA Frame_Shift_Del p.L302* 0.13 TCGA-VQ-A91E-01 11 118047235 118047235 A - SCN2B 5'UTR 0.41 TCGA-VQ-A91E-01 11 118925300 118925300 G A HYOU1 Missense_Mutation p.A195V 0.16 tolerated(0.08) benign(0.414) TCGA-VQ-A91E-01 11 11906071 11906073 AAG - USP47 In_Frame_Del p.K34del 0.13 TCGA-VQ-A91E-01 11 119181801 119181801 T G MCAM Silent p.T548T 0.14 TCGA-VQ-A91E-01 11 120918279 120918279 G C TBCEL Missense_Mutation p.G59A 0.12 deleterious(0.01) probably_damaging(0.975) TCGA-VQ-A91E-01 11 124007767 124007767 G T VWA5A Missense_Mutation p.K557N 0.10 tolerated(0.13) possibly_damaging(0.616) TCGA-VQ-A91E-01 11 124618381 124618381 G A VSIG2 Silent p.G252G 0.11 TCGA-VQ-A91E-01 11 125483986 125483986 C T STT3A Missense_Mutation p.A520V 0.08 deleterious(0) probably_damaging(0.939) TCGA-VQ-A91E-01 11 129762674 129762674 C T NFRKB Missense_Mutation p.R37H 0.09 deleterious_low_confidence(0.01) unknown(0) TCGA-VQ-A91E-01 11 130319145 130319145 G - ADAMTS15 Frame_Shift_Del p.G94Afs*14 0.14 TCGA-VQ-A91E-01 11 133791140 133791140 A G IGSF9B Missense_Mutation p.I827T 0.19 deleterious(0.05) possibly_damaging(0.757) TCGA-VQ-A91E-01 11 14535377 14535377 T C PSMA1 Missense_Mutation p.I140V 0.10 tolerated(1) benign(0.003) TCGA-VQ-A91E-01 11 1619328 1619328 T C KRTAP5-2 Silent p.G51G 0.15 TCGA-VQ-A91E-01 11 18303594 18303594 C T HPS5 Missense_Mutation p.A1078T 0.07 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91E-01 11 20178760 20178760 G A DBX1 Silent p.P165P 0.19 TCGA-VQ-A91E-01 11 22225350 22225350 G T ANO5 Missense_Mutation p.G14V 0.09 tolerated_low_confidence(0.08) benign(0) TCGA-VQ-A91E-01 11 30033563 30033563 A - KCNA4 Frame_Shift_Del p.F221Lfs*21 0.24 TCGA-VQ-A91E-01 11 3028167 3028167 G A CARS Silent p.S697S 0.12 TCGA-VQ-A91E-01 11 35641169 35641169 G A FJX1 Missense_Mutation p.G329S 0.15 tolerated(0.76) possibly_damaging(0.452) TCGA-VQ-A91E-01 11 44069855 44069855 T C ACCSL Missense_Mutation p.L90P 0.15 tolerated(0.21) benign(0.023) TCGA-VQ-A91E-01 11 4608436 4608436 T - OR52I2 Frame_Shift_Del p.F133Lfs*4 0.19 TCGA-VQ-A91E-01 11 46456492 46456492 T G AMBRA1 Missense_Mutation p.S820R 0.13 deleterious_low_confidence(0.01) benign(0.323) TCGA-VQ-A91E-01 11 47353682 47353682 A G MYBPC3 Missense_Mutation p.V1252A 0.12 tolerated(0.12) benign(0.003) TCGA-VQ-A91E-01 11 47431681 47431681 G A SLC39A13 Silent p.A12A 0.23 TCGA-VQ-A91E-01 11 47504329 47504329 T C CELF1 Missense_Mutation p.Q228R 0.23 deleterious(0.01) benign(0.145) TCGA-VQ-A91E-01 11 4945299 4945299 T C OR51G1 Missense_Mutation p.T91A 0.20 tolerated(1) benign(0) TCGA-VQ-A91E-01 11 50003666 50003666 G T OR4C12 Silent p.I124I 0.20 TCGA-VQ-A91E-01 11 56020402 56020402 A G OR5T3 Missense_Mutation p.I243V 0.29 tolerated(0.21) benign(0.1) TCGA-VQ-A91E-01 11 56043232 56043232 T - OR5T1 Frame_Shift_Del p.L41Yfs*4 0.23 TCGA-VQ-A91E-01 11 57413454 57413454 T C YPEL4 Nonstop_Mutation p.*128Wext*54 0.16 TCGA-VQ-A91E-01 11 5968688 5968688 C T OR56A3 Missense_Mutation p.L38F 0.14 deleterious(0.02) benign(0.32) TCGA-VQ-A91E-01 11 6048549 6048549 C T OR56A1 Missense_Mutation p.R129H 0.10 deleterious(0.02) benign(0.002) TCGA-VQ-A91E-01 11 605705 605705 G A PHRF1 Missense_Mutation p.V478I 0.24 tolerated(0.42) possibly_damaging(0.555) TCGA-VQ-A91E-01 11 60889151 60889151 C T CD5 Missense_Mutation p.R292C 0.16 deleterious(0.03) probably_damaging(0.994) TCGA-VQ-A91E-01 11 61026164 61026164 C - VWCE Frame_Shift_Del p.E951Kfs*33 0.23 TCGA-VQ-A91E-01 11 62285642 62285642 G A AHNAK Missense_Mutation p.P5416L 0.29 benign(0.111) TCGA-VQ-A91E-01 11 63964812 63964812 T C STIP1 Missense_Mutation p.Y248H 0.15 deleterious(0) probably_damaging(1) TCGA-VQ-A91E-01 11 64645748 64645748 G A EHD1 Silent p.L63L 0.14 TCGA-VQ-A91E-01 11 64875882 64875882 C T VPS51 Silent p.G313G 0.33 TCGA-VQ-A91E-01 11 64879053 64879053 C T VPS51 Silent p.R781R 0.15 TCGA-VQ-A91E-01 11 65144401 65144401 C - SLC25A45 Frame_Shift_Del p.L163Cfs*8 0.11 TCGA-VQ-A91E-01 11 66114469 66114469 T C B3GNT1 Missense_Mutation p.Q183R 0.25 tolerated(0.52) benign(0.002) TCGA-VQ-A91E-01 11 66475761 66475761 G A SPTBN2 Missense_Mutation p.R401W 0.21 deleterious(0) probably_damaging(0.998) TCGA-VQ-A91E-01 11 67410326 67410326 T C ACY3 Missense_Mutation p.T277A 0.29 tolerated(0.06) benign(0.027) TCGA-VQ-A91E-01 11 68201222 68201222 G A LRP5 Missense_Mutation p.A1306T 0.19 tolerated(0.57) benign(0.016) TCGA-VQ-A91E-01 11 6898719 6898719 G A OR10A4 Missense_Mutation p.V281M 0.14 deleterious(0.03) probably_damaging(0.983) TCGA-VQ-A91E-01 11 76830147 76830147 G A CAPN5 Silent p.T413T 0.17 TCGA-VQ-A91E-01 11 77047187 77047187 T C PAK1 Missense_Mutation p.M453V 0.13 deleterious(0) probably_damaging(0.987) TCGA-VQ-A91E-01 11 77667031 77667031 C T INTS4 Missense_Mutation p.S292N 0.19 tolerated(0.62) benign(0.001) TCGA-VQ-A91E-01 11 85361318 85361320 AAT - TMEM126A In_Frame_Del p.N8del 0.14 TCGA-VQ-A91E-01 11 88300667 88300667 T G GRM5 Missense_Mutation p.E728D 0.16 deleterious(0.02) possibly_damaging(0.741) TCGA-VQ-A91E-01 11 88911051 88911051 A G TYR 5'UTR 0.26 TCGA-VQ-A91E-01 11 92086684 92086684 C - FAT3 Frame_Shift_Del p.P470Qfs*12 0.15 TCGA-VQ-A91E-01 11 93170791 93170791 A - CCDC67 Frame_Shift_Del p.K575Nfs*3 0.25 TCGA-VQ-A91E-01 12 103696167 103696167 C T C12orf42 Missense_Mutation p.A268T 0.10 tolerated(0.26) benign(0.011) TCGA-VQ-A91E-01 12 104476535 104476535 A - HCFC2 Frame_Shift_Del p.N309Ifs*32 0.40 TCGA-VQ-A91E-01 12 107279729 107279729 C T RIC8B Missense_Mutation p.T500M 0.20 deleterious(0) possibly_damaging(0.475) TCGA-VQ-A91E-01 12 109186461 109186461 G A SSH1 Silent p.A498A 0.29 TCGA-VQ-A91E-01 12 109536104 109536104 T C UNG Intron 0.18 TCGA-VQ-A91E-01 12 109834335 109834335 A G MYO1H Missense_Mutation p.Q130R 0.23 tolerated(0.34) benign(0.028) TCGA-VQ-A91E-01 12 113553837 113553837 G A RASAL1 Nonsense_Mutation p.R251* 0.12 TCGA-VQ-A91E-01 12 117962954 117962954 G A KSR2 Missense_Mutation p.S641L 0.24 deleterious(0.01) benign(0.079) TCGA-VQ-A91E-01 12 121134241 121134241 C T MLEC Missense_Mutation p.P258S 0.10 deleterious(0) probably_damaging(0.988) TCGA-VQ-A91E-01 12 123651308 123651308 G A MPHOSPH9 Missense_Mutation p.R677W 0.10 deleterious(0) probably_damaging(1) TCGA-VQ-A91E-01 12 12982474 12982474 C T DDX47 Missense_Mutation p.R452W 0.20 deleterious(0.01) possibly_damaging(0.822) TCGA-VQ-A91E-01 12 132240013 132240013 G A SFSWAP Missense_Mutation p.D513N 0.09 tolerated(0.31) benign(0.016) TCGA-VQ-A91E-01 12 132589055 132589055 G A EP400NL Intron 0.33 TCGA-VQ-A91E-01 12 133196146 133196146 G A P2RX2 Missense_Mutation p.V99M 0.11 deleterious(0) probably_damaging(0.939) TCGA-VQ-A91E-01 12 133365689 133365689 C T GOLGA3 Missense_Mutation p.R912H 0.10 tolerated(0.86) benign(0.005) TCGA-VQ-A91E-01 12 1963204 1963204 T C CACNA2D4 Missense_Mutation p.E720G 0.17 tolerated(0.05) benign(0.052) TCGA-VQ-A91E-01 12 21630815 21630815 C A RECQL Silent p.T263T 0.18 TCGA-VQ-A91E-01 12 25380283 25380283 C T KRAS Missense_Mutation p.A59T 0.31 tolerated(0.06) possibly_damaging(0.528) TCGA-VQ-A91E-01 12 28459851 28459851 T C CCDC91 Silent p.S148S 0.33 TCGA-VQ-A91E-01 12 2904380 2904380 C T FKBP4 Silent p.I25I 0.31 TCGA-VQ-A91E-01 12 31585981 31585981 T - DENND5B Intron 0.50 TCGA-VQ-A91E-01 12 332297 332297 C T SLC6A13 Splice_Site p.X472_splice 0.33 TCGA-VQ-A91E-01 12 45567333 45567333 G A PLEKHA8P1 RNA 0.26 TCGA-VQ-A91E-01 12 49162741 49162741 C T ADCY6 Silent p.T1120T 0.25 TCGA-VQ-A91E-01 12 49428710 49428710 T C KMT2D Missense_Mutation p.K3414E 0.41 probably_damaging(0.952) TCGA-VQ-A91E-01 12 50055825 50055825 G A FMNL3 Missense_Mutation p.R126W 0.17 deleterious(0) probably_damaging(0.985) TCGA-VQ-A91E-01 12 5020636 5020636 A T KCNA1 Missense_Mutation p.D31V 0.24 tolerated(0.22) benign(0.045) TCGA-VQ-A91E-01 12 5021221 5021221 C T KCNA1 Missense_Mutation p.T226M 0.16 deleterious(0) probably_damaging(1) TCGA-VQ-A91E-01 12 52470940 52470940 T C C12orf44 Missense_Mutation p.M208T 0.12 deleterious(0.01) benign(0.005) TCGA-VQ-A91E-01 12 53421623 53421623 G A EIF4B Missense_Mutation p.R242Q 0.30 tolerated(0.07) benign(0.238) TCGA-VQ-A91E-01 12 53433109 53433109 A G EIF4B Missense_Mutation p.H555R 0.33 tolerated_low_confidence(1) benign(0.159) TCGA-VQ-A91E-01 12 53587009 53587009 G A ITGB7 Silent p.R547R 0.24 TCGA-VQ-A91E-01 12 54110201 54110201 T C CALCOCO1 Splice_Site p.X284_splice 0.11 TCGA-VQ-A91E-01 12 57036455 57036455 A G ATP5B Splice_Site p.X317_splice 0.12 TCGA-VQ-A91E-01 12 63544207 63544207 G A AVPR1A Missense_Mutation p.A137V 0.20 deleterious(0.02) benign(0.258) TCGA-VQ-A91E-01 12 63954363 63954363 G T DPY19L2 Missense_Mutation p.L736I 0.17 tolerated(0.4) benign(0.038) TCGA-VQ-A91E-01 12 66622066 66622066 T A IRAK3 Missense_Mutation p.I268N 0.17 deleterious(0) possibly_damaging(0.793) TCGA-VQ-A91E-01 12 6697096 6697096 C T CHD4 Missense_Mutation p.R1162Q 0.11 deleterious(0) benign(0.021) TCGA-VQ-A91E-01 12 6709383 6709383 G A CHD4 Silent p.C414C 0.20 TCGA-VQ-A91E-01 12 6711546 6711546 T - CHD4 Frame_Shift_Del p.K73Rfs*129 0.17 TCGA-VQ-A91E-01 12 6788263 6788263 G T ZNF384 Silent p.T51T 0.18 TCGA-VQ-A91E-01 12 69992114 69992114 A G CCT2 Missense_Mutation p.I450V 0.17 tolerated(0.09) benign(0.01) TCGA-VQ-A91E-01 12 81545685 81545685 C T ACSS3 Silent p.Y328Y 0.28 TCGA-VQ-A91E-01 12 85257235 85257235 C T SLC6A15 Missense_Mutation p.A601T 0.16 deleterious(0.02) probably_damaging(1) TCGA-VQ-A91E-01 12 9000161 9000161 C - A2ML1 Frame_Shift_Del p.S569Pfs*39 0.14 TCGA-VQ-A91E-01 12 93101603 93101603 C T C12orf74 3'UTR 0.21 TCGA-VQ-A91E-01 12 94725550 94725550 G A CCDC41 Missense_Mutation p.R545C 0.34 tolerated(0.09) benign(0.035) TCGA-VQ-A91E-01 12 968497 968497 A - WNK1 Frame_Shift_Del p.I498* 0.27 TCGA-VQ-A91E-01 13 103289440 103289441 - A TPP2 Frame_Shift_Ins p.I565Nfs*29 0.10 TCGA-VQ-A91E-01 13 110835386 110835386 A G COL4A1 Silent p.A683A 0.27 TCGA-VQ-A91E-01 13 111938510 111938510 C A ARHGEF7 Missense_Mutation p.P677H 0.15 deleterious(0) probably_damaging(0.964) TCGA-VQ-A91E-01 13 113803411 113803411 C T F10 Silent p.A349A 0.21 TCGA-VQ-A91E-01 13 114277514 114277514 C T TFDP1 Silent p.A33A 0.40 TCGA-VQ-A91E-01 13 22246320 22246320 G T FGF9 Missense_Mutation p.S90I 0.13 deleterious(0) probably_damaging(0.909) TCGA-VQ-A91E-01 13 25840278 25840278 G T MTMR6 Silent p.R151R 0.13 TCGA-VQ-A91E-01 13 25848233 25848233 G T MTMR6 Silent p.I39I 0.10 TCGA-VQ-A91E-01 13 27664063 27664063 A G USP12 Missense_Mutation p.Y231H 0.19 deleterious(0) probably_damaging(0.995) TCGA-VQ-A91E-01 13 33258137 33258137 A T PDS5B Nonsense_Mutation p.R394* 0.07 TCGA-VQ-A91E-01 13 33684168 33684168 G - STARD13 Frame_Shift_Del p.S964Qfs*4 0.16 TCGA-VQ-A91E-01 13 41766544 41766544 C T KBTBD7 Missense_Mutation p.R617H 0.10 deleterious(0.01) probably_damaging(0.912) TCGA-VQ-A91E-01 13 46067482 46067482 T C COG3 Silent p.D396D 0.16 TCGA-VQ-A91E-01 13 46543255 46543255 T C ZC3H13 Missense_Mutation p.T1142A 0.17 unknown(0) TCGA-VQ-A91E-01 13 52749854 52749854 T C MRPS31P5 RNA 0.23 TCGA-VQ-A91E-01 13 84455525 84455525 C T SLITRK1 Missense_Mutation p.V40I 0.08 tolerated(0.56) benign(0.029) TCGA-VQ-A91E-01 13 86369834 86369834 T C SLITRK6 Silent p.P270P 0.14 TCGA-VQ-A91E-01 13 98660389 98660389 A G IPO5 Missense_Mutation p.D616G 0.10 deleterious(0.01) benign(0.065) TCGA-VQ-A91E-01 14 100126665 100126665 T C HHIPL1 Missense_Mutation p.V475A 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A91E-01 14 100820155 100820155 G A WARS Silent p.D198D 0.12 TCGA-VQ-A91E-01 14 103412875 103412875 C T CDC42BPB Silent p.V1226V 0.17 TCGA-VQ-A91E-01 14 103596447 103596447 A G TNFAIP2 Missense_Mutation p.I362V 0.29 deleterious(0) probably_damaging(0.997) TCGA-VQ-A91E-01 14 103803159 103803159 T C EIF5 Silent p.P100P 0.10 TCGA-VQ-A91E-01 14 104251248 104251248 C T PPP1R13B Missense_Mutation p.R54H 0.14 deleterious(0.02) probably_damaging(0.998) TCGA-VQ-A91E-01 14 105843116 105843116 G A PACS2 Silent p.S271S 0.21 TCGA-VQ-A91E-01 14 106110264 106110264 T C IGHG2 Silent p.S118S 0.07 TCGA-VQ-A91E-01 14 21831427 21831427 C T SUPT16H Missense_Mutation p.G454S 0.21 tolerated(0.07) possibly_damaging(0.751) TCGA-VQ-A91E-01 14 23442695 23442695 A G AJUBA Missense_Mutation p.M525T 0.15 deleterious(0.04) benign(0.21) TCGA-VQ-A91E-01 14 24633973 24633973 C A IRF9 Missense_Mutation p.P267H 0.07 deleterious(0.02) probably_damaging(0.974) TCGA-VQ-A91E-01 14 24724455 24724455 T C TGM1 Silent p.S550S 0.16 TCGA-VQ-A91E-01 14 24780816 24780816 G - LTB4R2 Frame_Shift_Del p.G317Afs*17 0.16 TCGA-VQ-A91E-01 14 33292169 33292169 C T AKAP6 Missense_Mutation p.S1717L 0.16 deleterious(0.04) possibly_damaging(0.536) TCGA-VQ-A91E-01 14 35253125 35253125 T - BAZ1A Frame_Shift_Del p.M614* 0.16 TCGA-VQ-A91E-01 14 47426671 47426671 G A MDGA2 Silent p.Y665Y 0.12 TCGA-VQ-A91E-01 14 55529810 55529810 A G MAPK1IP1L Missense_Mutation p.N165D 0.11 tolerated_low_confidence(0.07) unknown(0) TCGA-VQ-A91E-01 14 57876370 57876370 C T NAA30 3'UTR 0.23 TCGA-VQ-A91E-01 14 60616897 60616897 A - DHRS7 Frame_Shift_Del p.F214Lfs*14 0.19 TCGA-VQ-A91E-01 14 64727389 64727389 T C ESR2 Missense_Mutation p.K244E 0.20 tolerated(0.53) benign(0.066) TCGA-VQ-A91E-01 14 65041242 65041242 G A PPP1R36 Silent p.A201A 0.18 TCGA-VQ-A91E-01 14 65208583 65208583 C T PLEKHG3 Missense_Mutation p.S727L 0.14 tolerated(0.07) possibly_damaging(0.754) TCGA-VQ-A91E-01 14 70925845 70925845 T C ADAM21 Silent p.C543C 0.15 TCGA-VQ-A91E-01 14 71540382 71540382 G A PCNX Missense_Mutation p.S1658N 0.19 tolerated(0.47) benign(0.038) TCGA-VQ-A91E-01 14 72196981 72196981 G A SIPA1L1 Silent p.R1629R 0.10 TCGA-VQ-A91E-01 14 72200404 72200404 G T SIPA1L1 Missense_Mutation p.S1649I 0.18 tolerated(0.29) possibly_damaging(0.637) TCGA-VQ-A91E-01 14 73563808 73563808 C T RBM25 Silent p.D243D 0.19 TCGA-VQ-A91E-01 14 79423664 79423664 A - NRXN3 Frame_Shift_Del p.S414Afs*4 0.10 TCGA-VQ-A91E-01 14 88654429 88654429 C T KCNK10 Missense_Mutation p.R298Q 0.20 tolerated(0.39) possibly_damaging(0.526) TCGA-VQ-A91E-01 14 91701482 91701482 A G GPR68 5'UTR 0.20 TCGA-VQ-A91E-01 14 91780276 91780276 C T CCDC88C Silent p.E628E 0.13 TCGA-VQ-A91E-01 14 95569745 95569745 A G DICER1 Missense_Mutation p.Y1330H 0.15 deleterious(0) probably_damaging(0.996) TCGA-VQ-A91E-01 14 96152827 96152827 G A TCL1B Missense_Mutation p.R8H 0.08 tolerated(0.55) benign(0.001) TCGA-VQ-A91E-01 15 25438367 25438367 A C SNORD115-11 3'Flank 0.28 TCGA-VQ-A91E-01 15 29561231 29561231 A C NDNL2 Missense_Mutation p.F227V 0.10 deleterious(0) probably_damaging(1) TCGA-VQ-A91E-01 15 32450683 32450683 A G CHRNA7 Silent p.T252T 0.26 TCGA-VQ-A91E-01 15 33603231 33603231 C T RYR3 5'UTR 0.15 TCGA-VQ-A91E-01 15 33833031 33833031 T C RYR3 Missense_Mutation p.S196P 0.19 probably_damaging(0.963) TCGA-VQ-A91E-01 15 33941359 33941359 C T RYR3 Silent p.Y1355Y 0.11 TCGA-VQ-A91E-01 15 43584181 43584181 C A TGM7 Missense_Mutation p.G185V 0.26 deleterious(0) probably_damaging(1) TCGA-VQ-A91E-01 15 43621728 43621728 G A LCMT2 Silent p.T320T 0.14 TCGA-VQ-A91E-01 15 43820949 43820949 C A MAP1A Silent p.A2426A 0.20 TCGA-VQ-A91E-01 15 45557290 45557290 T A SLC28A2 Missense_Mutation p.F236I 0.16 deleterious(0.01) probably_damaging(1) TCGA-VQ-A91E-01 15 48054457 48054457 G A SEMA6D Missense_Mutation p.R200Q 0.11 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91E-01 15 48787666 48787666 C A FBN1 Nonsense_Mutation p.E847* 0.13 TCGA-VQ-A91E-01 15 50534410 50534410 C T HDC 3'UTR 0.14 TCGA-VQ-A91E-01 15 51828491 51828491 C T DMXL2 Missense_Mutation p.R729H 0.16 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91E-01 15 54306605 54306605 C A UNC13C Nonsense_Mutation p.S502* 0.12 TCGA-VQ-A91E-01 15 59553700 59553701 TA - MYO1E Frame_Shift_Del p.I52Rfs*22 0.19 TCGA-VQ-A91E-01 15 63084975 63084975 G A TLN2 Missense_Mutation p.V1958I 0.47 deleterious(0.04) benign(0.041) TCGA-VQ-A91E-01 15 64967247 64967247 A - ZNF609 Frame_Shift_Del p.K734Rfs*12 0.19 TCGA-VQ-A91E-01 15 65621765 65621765 G - IGDCC3 Frame_Shift_Del p.P723Rfs*37 0.20 TCGA-VQ-A91E-01 15 68378846 68378846 C T PIAS1 Missense_Mutation p.S76F 0.12 deleterious(0) benign(0.1) TCGA-VQ-A91E-01 15 70983666 70983666 T C UACA Missense_Mutation p.H113R 0.10 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91E-01 15 75498448 75498448 G A C15orf39 Missense_Mutation p.R20H 0.17 deleterious(0) possibly_damaging(0.715) TCGA-VQ-A91E-01 15 85327870 85327870 C A ZNF592 Missense_Mutation p.P655H 0.13 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91E-01 15 85402584 85402584 G A ALPK3 Missense_Mutation p.A1512T 0.12 tolerated(0.43) probably_damaging(0.93) TCGA-VQ-A91E-01 15 85405998 85405998 G A ALPK3 Missense_Mutation p.R1623Q 0.12 tolerated(0.2) benign(0.082) TCGA-VQ-A91E-01 15 87531308 87531308 G A AGBL1 Silent p.L1058L 0.16 TCGA-VQ-A91E-01 15 89021184 89021184 C T MRPS11 Missense_Mutation p.R187C 0.12 deleterious(0) probably_damaging(1) TCGA-VQ-A91E-01 15 90190146 90190147 - G KIF7 Frame_Shift_Ins p.L568Pfs*21 0.24 TCGA-VQ-A91E-01 15 99671905 99671905 T C SYNM Missense_Mutation p.S1113P 0.22 deleterious(0) probably_damaging(0.956) TCGA-VQ-A91E-01 16 1399463 1399463 C T TSR3 Missense_Mutation p.G305E 0.20 tolerated_low_confidence(0.19) benign(0.037) TCGA-VQ-A91E-01 16 14687194 14687194 C T PARN Missense_Mutation p.M294I 0.14 tolerated(0.18) possibly_damaging(0.457) TCGA-VQ-A91E-01 16 15141866 15141866 A G NTAN1 Missense_Mutation p.S58P 0.18 deleterious(0.03) benign(0.246) TCGA-VQ-A91E-01 16 19548603 19548603 C T CCP110 Nonsense_Mutation p.Q538* 0.12 TCGA-VQ-A91E-01 16 1961840 1961840 G A HS3ST6 Silent p.V229V 0.12 TCGA-VQ-A91E-01 16 2028207 2028207 G A TBL3 Missense_Mutation p.R707Q 0.21 tolerated(0.06) benign(0.273) TCGA-VQ-A91E-01 16 20974673 20974673 G T DNAH3 Silent p.S3511S 0.10 TCGA-VQ-A91E-01 16 21212698 21212698 G A ZP2 Silent p.V562V 0.14 TCGA-VQ-A91E-01 16 2159344 2159344 G - PKD1 Frame_Shift_Del p.R1942Afs*7 0.20 TCGA-VQ-A91E-01 16 22441123 22441123 A G RRN3P3 RNA 0.19 TCGA-VQ-A91E-01 16 2326637 2326637 G A ABCA3 3'UTR 0.24 TCGA-VQ-A91E-01 16 24580551 24580551 C T RBBP6 Missense_Mutation p.A847V 0.09 tolerated_low_confidence(0.4) unknown(0) TCGA-VQ-A91E-01 16 27517358 27517358 G A GTF3C1 Silent p.C544C 0.25 TCGA-VQ-A91E-01 16 31501379 31501379 T C C16orf58 3'UTR 0.19 TCGA-VQ-A91E-01 16 46706275 46706275 G A VPS35 Missense_Mutation p.L424F 0.28 deleterious(0.03) possibly_damaging(0.461) TCGA-VQ-A91E-01 16 47533745 47533745 C T PHKB Missense_Mutation p.A82V 0.12 deleterious(0.04) possibly_damaging(0.835) TCGA-VQ-A91E-01 16 49314842 49314842 T C CBLN1 Missense_Mutation p.T126A 0.16 tolerated(0.2) benign(0.168) TCGA-VQ-A91E-01 16 50745601 50745601 A G NOD2 Silent p.P593P 0.14 TCGA-VQ-A91E-01 16 57805133 57805133 G A KIFC3 Missense_Mutation p.R248W 0.19 deleterious(0) possibly_damaging(0.462) TCGA-VQ-A91E-01 16 61891112 61891112 T G CDH8 Missense_Mutation p.D193A 0.19 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91E-01 16 65015974 65015974 A C CDH11 Silent p.P410P 0.11 TCGA-VQ-A91E-01 16 65032563 65032563 G A CDH11 Missense_Mutation p.P142L 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A91E-01 16 67686424 67686424 T C RLTPR Missense_Mutation p.L956P 0.13 deleterious(0.04) possibly_damaging(0.733) TCGA-VQ-A91E-01 16 67916827 67916827 C A EDC4 Intron 0.25 TCGA-VQ-A91E-01 16 68011676 68011676 C T DPEP3 Silent p.S296S 0.20 TCGA-VQ-A91E-01 16 68597307 68597308 - A ZFP90 Frame_Shift_Ins p.K209Efs*4 0.16 TCGA-VQ-A91E-01 16 71570593 71570593 A - CHST4 Frame_Shift_Del p.M7* 0.15 TCGA-VQ-A91E-01 16 72132847 72132847 G A DHX38 Silent p.S262S 0.14 TCGA-VQ-A91E-01 16 72137022 72137022 A C DHX38 Missense_Mutation p.S517R 0.18 deleterious(0) probably_damaging(0.944) TCGA-VQ-A91E-01 16 72829897 72829897 G T ZFHX3 Silent p.P2228P 0.18 TCGA-VQ-A91E-01 16 74666460 74666460 A G RFWD3 Missense_Mutation p.L513P 0.13 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91E-01 16 77327094 77327094 G A ADAMTS18 Missense_Mutation p.A1023V 0.17 tolerated(0.13) benign(0.005) TCGA-VQ-A91E-01 16 84125441 84125441 A C MBTPS1 Missense_Mutation p.S287A 0.21 deleterious(0.02) probably_damaging(0.981) TCGA-VQ-A91E-01 16 84188293 84188293 G A DNAAF1 Missense_Mutation p.C155Y 0.17 deleterious(0) probably_damaging(0.996) TCGA-VQ-A91E-01 16 84211459 84211459 T C DNAAF1 3'UTR 0.19 TCGA-VQ-A91E-01 16 88767781 88767781 C T RNF166 Silent p.P67P 0.33 TCGA-VQ-A91E-01 16 89352507 89352508 - G ANKRD11 Frame_Shift_Ins p.T278Hfs*71 0.10 TCGA-VQ-A91E-01 16 89877353 89877353 A G FANCA Missense_Mutation p.L137P 0.17 deleterious(0) possibly_damaging(0.766) TCGA-VQ-A91E-01 16 89985883 89985883 A G MC1R Missense_Mutation p.M73V 0.27 deleterious(0.01) benign(0.069) TCGA-VQ-A91E-01 17 10728759 10728759 G A PIRT Silent p.F68F 0.22 TCGA-VQ-A91E-01 17 16120539 16120539 T G PIGL 5'UTR 0.19 TCGA-VQ-A91E-01 17 16455938 16455938 T - ZNF287 Frame_Shift_Del p.K506Nfs*259 0.12 TCGA-VQ-A91E-01 17 17046886 17046886 C - MPRIP Frame_Shift_Del p.P353Qfs*30 0.26 TCGA-VQ-A91E-01 17 17046919 17046919 C - MPRIP Frame_Shift_Del p.L364Cfs*19 0.19 TCGA-VQ-A91E-01 17 17919993 17919993 T C LRRC48 3'UTR 0.22 TCGA-VQ-A91E-01 17 18135810 18135810 T C LLGL1 Missense_Mutation p.Y61H 0.13 deleterious(0) probably_damaging(0.971) TCGA-VQ-A91E-01 17 18882052 18882052 A G FAM83G Silent p.S309S 0.21 TCGA-VQ-A91E-01 17 18922808 18922808 A G SLC5A10 Silent p.Q454Q 0.15 TCGA-VQ-A91E-01 17 21730939 21730939 G A UBBP4 Missense_Mutation p.V81M 0.18 deleterious(0) possibly_damaging(0.636) TCGA-VQ-A91E-01 17 2570387 2570387 G A PAFAH1B1 Silent p.P98P 0.17 TCGA-VQ-A91E-01 17 26821043 26821043 C T SLC13A2 Missense_Mutation p.S418F 0.17 deleterious(0) probably_damaging(0.995) TCGA-VQ-A91E-01 17 26902236 26902236 C T ALDOC Missense_Mutation p.V77I 0.18 tolerated(0.11) benign(0.129) TCGA-VQ-A91E-01 17 27069045 27069047 CTC - NEK8 3'UTR 0.17 TCGA-VQ-A91E-01 17 27958037 27958037 A G SSH2 Missense_Mutation p.L1365S 0.27 tolerated_low_confidence(0.21) probably_damaging(0.982) TCGA-VQ-A91E-01 17 30814887 30814887 T C CDK5R1 Silent p.N83N 0.14 TCGA-VQ-A91E-01 17 35798011 35798011 T G TADA2A Intron 0.17 TCGA-VQ-A91E-01 17 36453129 36453129 G A MRPL45 5'UTR 0.22 TCGA-VQ-A91E-01 17 38253388 38253389 - G NR1D1 Frame_Shift_Ins p.G101Wfs*33 0.14 TCGA-VQ-A91E-01 17 38253490 38253490 G A NR1D1 Silent p.R66R 0.20 TCGA-VQ-A91E-01 17 39086293 39086293 G A KRT23 Nonsense_Mutation p.R179* 0.25 TCGA-VQ-A91E-01 17 39506856 39506856 C T KRT33A Missense_Mutation p.S55N 0.10 tolerated(1) benign(0.008) TCGA-VQ-A91E-01 17 39535408 39535408 C T KRT34 Silent p.T341T 0.10 TCGA-VQ-A91E-01 17 39577143 39577143 C T KRT37 Missense_Mutation p.S446N 0.19 tolerated_low_confidence(0.08) benign(0.044) TCGA-VQ-A91E-01 17 39644947 39644947 C T KRT36 Silent p.R163R 0.09 TCGA-VQ-A91E-01 17 40180200 40180200 C T ZNF385C Silent p.P345P 0.21 TCGA-VQ-A91E-01 17 40362447 40362447 T - STAT5B Frame_Shift_Del p.K583Nfs*16 0.14 TCGA-VQ-A91E-01 17 4047006 4047006 A G CYB5D2 5'UTR 0.10 TCGA-VQ-A91E-01 17 40825491 40825491 C - PLEKHH3 Frame_Shift_Del p.V192Wfs*6 0.17 TCGA-VQ-A91E-01 17 4113173 4113173 C T ANKFY1 Silent p.E218E 0.20 TCGA-VQ-A91E-01 17 4389805 4389805 G - SPNS3 Frame_Shift_Del p.G461Afs*6 0.09 TCGA-VQ-A91E-01 17 44249084 44249084 A G KANSL1 Silent p.N142N 0.08 TCGA-VQ-A91E-01 17 45906009 45906009 C T MRPL10 Missense_Mutation p.R37H 0.18 deleterious(0) probably_damaging(0.939) TCGA-VQ-A91E-01 17 46058093 46058093 G A CDK5RAP3 Silent p.V404V 0.16 TCGA-VQ-A91E-01 17 46128959 46128959 C - NFE2L1 Frame_Shift_Del p.P162Qfs*6 0.26 TCGA-VQ-A91E-01 17 46669585 46669585 C T HOXB5 Missense_Mutation p.A266T 0.21 deleterious(0.01) probably_damaging(0.957) TCGA-VQ-A91E-01 17 56438159 56438161 CTC - RNF43 In_Frame_Del p.E278del 0.58 TCGA-VQ-A91E-01 17 62133136 62133136 C T ERN1 Missense_Mutation p.S524N 0.23 tolerated(0.08) probably_damaging(0.993) TCGA-VQ-A91E-01 17 6380522 6380522 G A PITPNM3 Silent p.V304V 0.28 TCGA-VQ-A91E-01 17 7286315 7286315 T C TNK1 Missense_Mutation p.W24R 0.09 tolerated(0.67) benign(0) TCGA-VQ-A91E-01 17 72915987 72915987 A G USH1G Missense_Mutation p.M315T 0.21 deleterious(0) probably_damaging(0.961) TCGA-VQ-A91E-01 17 7296646 7296646 C T TMEM256-PLSCR3 Silent p.L108L 0.18 TCGA-VQ-A91E-01 17 7329574 7329574 C T C17orf74 Silent p.H88H 0.18 TCGA-VQ-A91E-01 17 73723542 73723542 C T ITGB4 Missense_Mutation p.R74W 0.34 deleterious(0.03) benign(0.005) TCGA-VQ-A91E-01 17 73753595 73753595 A G ITGB4 Missense_Mutation p.T1810A 0.12 deleterious(0) benign(0.08) TCGA-VQ-A91E-01 17 73975197 73975197 G A ACOX1 5'UTR 0.18 TCGA-VQ-A91E-01 17 74869023 74869023 G A MGAT5B Silent p.S64S 0.12 TCGA-VQ-A91E-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.10 deleterious(0) probably_damaging(1) TCGA-VQ-A91E-01 17 77758083 77758083 A G CBX2 Missense_Mutation p.T281A 0.12 tolerated(0.57) benign(0.001) TCGA-VQ-A91E-01 17 78343573 78343573 T C RNF213 Missense_Mutation p.C4111R 0.21 benign(0) TCGA-VQ-A91E-01 17 79826721 79826721 G A ARHGDIA 3'UTR 0.18 TCGA-VQ-A91E-01 17 80048353 80048353 C T FASN Missense_Mutation p.A590T 0.31 deleterious(0) probably_damaging(1) TCGA-VQ-A91E-01 17 80195706 80195706 A G SLC16A3 Missense_Mutation p.S354G 0.20 deleterious(0.01) benign(0.253) TCGA-VQ-A91E-01 17 9511538 9511538 T C WDR16 Splice_Site p.X285_splice 0.14 TCGA-VQ-A91E-01 18 10488006 10488006 C A APCDD1 Missense_Mutation p.P506T 0.10 tolerated(1) benign(0) TCGA-VQ-A91E-01 18 12801988 12801988 T C PTPN2 Missense_Mutation p.M341V 0.26 tolerated(0.37) benign(0) TCGA-VQ-A91E-01 18 13681811 13681811 T C FAM210A Missense_Mutation p.H89R 0.13 tolerated(0.58) benign(0) TCGA-VQ-A91E-01 18 21148814 21148814 A G NPC1 Missense_Mutation p.Y146H 0.16 deleterious(0) probably_damaging(0.994) TCGA-VQ-A91E-01 18 21736851 21736851 T C CABYR Intron 0.12 TCGA-VQ-A91E-01 18 2601452 2601452 A - NDC80 Frame_Shift_Del p.M480Wfs*7 0.09 TCGA-VQ-A91E-01 18 28720206 28720206 G T DSC1 Missense_Mutation p.A440E 0.17 deleterious(0.01) probably_damaging(0.977) TCGA-VQ-A91E-01 18 28736079 28736079 T C DSC1 Missense_Mutation p.K133R 0.17 deleterious(0.01) benign(0.113) TCGA-VQ-A91E-01 18 2909722 2909722 C T EMILIN2 Missense_Mutation p.A910V 0.10 tolerated(0.17) benign(0.208) TCGA-VQ-A91E-01 18 29125877 29125877 A - DSG2 Frame_Shift_Del p.I845* 0.15 TCGA-VQ-A91E-01 18 30350262 30350262 G T KLHL14 Missense_Mutation p.P98Q 0.12 tolerated_low_confidence(0.33) benign(0.001) TCGA-VQ-A91E-01 18 30804894 30804895 - T CCDC178 Frame_Shift_Ins p.L555Tfs*11 0.19 TCGA-VQ-A91E-01 18 30846924 30846924 T - CCDC178 Frame_Shift_Del p.K455Nfs*9 0.12 TCGA-VQ-A91E-01 18 30847010 30847010 T - CCDC178 Frame_Shift_Del p.T427Hfs*23 0.11 TCGA-VQ-A91E-01 18 32720278 32720278 C T MAPRE2 Missense_Mutation p.P310L 0.33 tolerated(0.52) unknown(0) TCGA-VQ-A91E-01 18 34174809 34174809 G A FHOD3 Silent p.E222E 0.14 TCGA-VQ-A91E-01 18 34191953 34191953 C T FHOD3 Silent p.D284D 0.25 TCGA-VQ-A91E-01 18 40857246 40857246 T - SYT4 Frame_Shift_Del p.M1? 0.32 TCGA-VQ-A91E-01 18 43459143 43459143 A - EPG5 Frame_Shift_Del p.Y1902Ifs*26 0.10 TCGA-VQ-A91E-01 18 44015286 44015286 C T RNF165 Missense_Mutation p.R138C 0.11 deleterious(0) possibly_damaging(0.739) TCGA-VQ-A91E-01 18 46956652 46956653 GA - DYM Frame_Shift_Del p.S38Ifs*8 0.11 TCGA-VQ-A91E-01 18 46956724 46956724 T - DYM Frame_Shift_Del p.N14Mfs*4 0.14 TCGA-VQ-A91E-01 18 59933950 59933950 A G KIAA1468 Missense_Mutation p.Q883R 0.21 deleterious(0.01) possibly_damaging(0.846) TCGA-VQ-A91E-01 18 6949101 6949101 T - LAMA1 Frame_Shift_Del p.N2852Ifs*13 0.15 TCGA-VQ-A91E-01 18 7017348 7017348 C T LAMA1 Missense_Mutation p.V913M 0.22 tolerated(0.07) benign(0.149) TCGA-VQ-A91E-01 18 76755135 76755135 C T SALL3 Silent p.S1048S 0.18 TCGA-VQ-A91E-01 18 7888274 7888274 G A PTPRM Missense_Mutation p.G123R 0.22 deleterious(0) probably_damaging(0.947) TCGA-VQ-A91E-01 19 1004973 1004973 G A GRIN3B Silent p.T491T 0.22 TCGA-VQ-A91E-01 19 1007861 1007861 C - GRIN3B Frame_Shift_Del p.K738Sfs*25 0.24 TCGA-VQ-A91E-01 19 11687266 11687266 C T ACP5 Missense_Mutation p.R176Q 0.11 tolerated(0.54) benign(0.005) TCGA-VQ-A91E-01 19 12738661 12738661 A G ZNF791 Silent p.G106G 0.21 TCGA-VQ-A91E-01 19 14273944 14273944 C T LPHN1 Silent p.E228E 0.09 TCGA-VQ-A91E-01 19 1556510 1556510 C T MEX3D Silent p.A336A 0.32 TCGA-VQ-A91E-01 19 17919098 17919098 G A B3GNT3 Missense_Mutation p.R161Q 0.18 tolerated(0.32) benign(0.061) TCGA-VQ-A91E-01 19 19212614 19212614 T A SLC25A42 Missense_Mutation p.S36T 0.12 deleterious(0.02) possibly_damaging(0.626) TCGA-VQ-A91E-01 19 19338151 19338151 C T NCAN Silent p.P574P 0.15 TCGA-VQ-A91E-01 19 2120885 2120885 G A AP3D1 Missense_Mutation p.A486V 0.16 deleterious(0) probably_damaging(0.967) TCGA-VQ-A91E-01 19 2416692 2416692 C - TMPRSS9 Frame_Shift_Del p.L602Wfs*26 0.14 TCGA-VQ-A91E-01 19 2851615 2851615 G A ZNF555 Missense_Mutation p.E94K 0.14 tolerated(0.12) benign(0.084) TCGA-VQ-A91E-01 19 33484906 33484906 C T RHPN2 Missense_Mutation p.V492I 0.06 deleterious(0.03) benign(0.062) TCGA-VQ-A91E-01 19 34663587 34663587 C A LSM14A Missense_Mutation p.L14I 0.21 deleterious(0) possibly_damaging(0.551) TCGA-VQ-A91E-01 19 35500067 35500067 C T GRAMD1A Missense_Mutation p.S18L 0.10 tolerated(0.3) unknown(0) TCGA-VQ-A91E-01 19 35642355 35642355 A C FXYD7 Missense_Mutation p.K50T 0.19 tolerated(0.07) possibly_damaging(0.482) TCGA-VQ-A91E-01 19 35741260 35741260 A G LSR Missense_Mutation p.H99R 0.16 tolerated(0.29) probably_damaging(0.996) TCGA-VQ-A91E-01 19 36205538 36205538 C - ZBTB32 Frame_Shift_Del p.I6* 0.16 TCGA-VQ-A91E-01 19 36237614 36237615 TG - PSENEN Frame_Shift_Del p.W58Afs*62 0.18 TCGA-VQ-A91E-01 19 36594284 36594284 C T WDR62 Missense_Mutation p.S1185F 0.14 deleterious(0) probably_damaging(0.983) TCGA-VQ-A91E-01 19 37369058 37369058 T G ZNF345 Silent p.T442T 0.30 TCGA-VQ-A91E-01 19 37903673 37903673 T C ZNF569 Silent p.T629T 0.21 TCGA-VQ-A91E-01 19 38573070 38573070 C T SIPA1L3 Missense_Mutation p.R289W 0.31 deleterious(0.02) benign(0.001) TCGA-VQ-A91E-01 19 38610098 38610098 C T SIPA1L3 Missense_Mutation p.T815I 0.18 deleterious(0) probably_damaging(0.995) TCGA-VQ-A91E-01 19 38968487 38968487 T C RYR1 Silent p.D1477D 0.20 TCGA-VQ-A91E-01 19 38985230 38985230 C - RYR1 Frame_Shift_Del p.Q2173Rfs*6 0.08 TCGA-VQ-A91E-01 19 3982989 3982989 A G EEF2 Missense_Mutation p.L143P 0.16 deleterious(0) benign(0.009) TCGA-VQ-A91E-01 19 4097280 4097280 G A MAP2K2 Silent p.N327N 0.17 TCGA-VQ-A91E-01 19 44351735 44351735 T - ZNF283 Frame_Shift_Del p.W330Gfs*10 0.28 TCGA-VQ-A91E-01 19 44384219 44384219 G A ZNF404 Nonsense_Mutation p.Q27* 0.12 TCGA-VQ-A91E-01 19 4523643 4523643 C A PLIN5 Missense_Mutation p.G430V 0.16 tolerated_low_confidence(0.17) benign(0.003) TCGA-VQ-A91E-01 19 47151514 47151514 C G DACT3 3'UTR 0.33 TCGA-VQ-A91E-01 19 47240144 47240144 C T STRN4 Missense_Mutation p.V159M 0.11 tolerated(0.23) benign(0.023) TCGA-VQ-A91E-01 19 48339502 48339502 G A CRX Missense_Mutation p.A35T 0.13 tolerated(1) benign(0) TCGA-VQ-A91E-01 19 48790086 48790086 G A ZNF114 Missense_Mutation p.G402E 0.12 tolerated(0.55) probably_damaging(0.931) TCGA-VQ-A91E-01 19 49693534 49693534 T C TRPM4 Missense_Mutation p.F697L 0.07 deleterious(0.02) possibly_damaging(0.844) TCGA-VQ-A91E-01 19 50463828 50463828 C T SIGLEC11 Silent p.A147A 0.14 TCGA-VQ-A91E-01 19 50912103 50912103 G T POLD1 Missense_Mutation p.A613S 0.08 deleterious(0) probably_damaging(0.913) TCGA-VQ-A91E-01 19 51022603 51022603 G A LRRC4B Missense_Mutation p.R123C 0.16 deleterious(0) probably_damaging(0.974) TCGA-VQ-A91E-01 19 51857486 51857486 G A ETFB Missense_Mutation p.A136V 0.22 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-VQ-A91E-01 19 52941182 52941182 A C ZNF534 Missense_Mutation p.T170P 0.15 tolerated(0.15) possibly_damaging(0.908) TCGA-VQ-A91E-01 19 53269097 53269098 AA - ZNF600 Frame_Shift_Del p.Y638Qfs*3 0.15 TCGA-VQ-A91E-01 19 55301594 55301594 A - CTB-61M7.1 RNA 0.25 TCGA-VQ-A91E-01 19 57027682 57027682 C A ZNF471 Silent p.S24S 0.12 TCGA-VQ-A91E-01 19 57089925 57089925 G A ZNF470 Missense_Mutation p.A710T 0.27 tolerated(0.15) benign(0.007) TCGA-VQ-A91E-01 19 57184246 57184246 T G ZNF835 5'Flank 0.29 TCGA-VQ-A91E-01 19 58005300 58005300 G A ZNF419 Missense_Mutation p.E460K 0.12 tolerated(0.11) benign(0.022) TCGA-VQ-A91E-01 19 58084293 58084293 C T ZNF416 Missense_Mutation p.E327K 0.10 tolerated(0.25) possibly_damaging(0.476) TCGA-VQ-A91E-01 19 58196632 58196632 T C ZNF551 Silent p.G28G 0.16 TCGA-VQ-A91E-01 19 58370315 58370315 G A ZNF587 Missense_Mutation p.V179I 0.07 deleterious(0.01) benign(0.103) TCGA-VQ-A91E-01 19 58928343 58928343 A G ZNF584 Missense_Mutation p.H153R 0.10 deleterious(0.03) benign(0.008) TCGA-VQ-A91E-01 19 58967279 58967279 G A ZNF324B Missense_Mutation p.R323Q 0.17 tolerated(0.09) probably_damaging(0.997) TCGA-VQ-A91E-01 19 613381 613381 G A HCN2 Missense_Mutation p.R573H 0.21 deleterious(0) possibly_damaging(0.798) TCGA-VQ-A91E-01 19 7743440 7743440 G A CTD-3214H19.16 Missense_Mutation p.S19N 0.15 tolerated_low_confidence(0.14) benign(0.383) TCGA-VQ-A91E-01 19 8932730 8932730 T C ZNF558 Silent p.G23G 0.20 TCGA-VQ-A91E-01 19 9066679 9066679 T C MUC16 Missense_Mutation p.M6923V 0.15 unknown(0) TCGA-VQ-A91E-01 19 9069753 9069753 G T MUC16 Missense_Mutation p.P5898Q 0.15 unknown(0) TCGA-VQ-A91E-01 19 9730130 9730130 C T ZNF561 Translation_Start_Site p.M1? 0.20 deleterious(0.03) possibly_damaging(0.885) TCGA-VQ-A91E-01 1 108681756 108681756 G A SLC25A24 Silent p.C391C 0.24 TCGA-VQ-A91E-01 1 110882873 110882873 C - RBM15 Frame_Shift_Del p.P284Lfs*98 0.10 TCGA-VQ-A91E-01 1 111215944 111215944 T C KCNA3 Silent p.Q496Q 0.19 TCGA-VQ-A91E-01 1 115215729 115215729 T - AMPD1 3'UTR 0.35 TCGA-VQ-A91E-01 1 118039461 118039461 A - MAN1A2 Frame_Shift_Del p.K456Rfs*15 0.14 TCGA-VQ-A91E-01 1 11882778 11882778 T C CLCN6 Missense_Mutation p.C125R 0.24 tolerated(0.23) possibly_damaging(0.766) TCGA-VQ-A91E-01 1 12820799 12820799 C T C1orf158 Missense_Mutation p.P167L 0.12 tolerated(0.16) possibly_damaging(0.744) TCGA-VQ-A91E-01 1 12955627 12955627 G A PRAMEF10 Silent p.L18L 0.10 TCGA-VQ-A91E-01 1 147086318 147086319 - C BCL9 Frame_Shift_Ins p.S157Lfs*27 0.16 TCGA-VQ-A91E-01 1 147380164 147380164 G A GJA8 Missense_Mutation p.V28M 0.20 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91E-01 1 149897767 149897767 G A SF3B4 Missense_Mutation p.H292Y 0.14 tolerated(0.13) unknown(0) TCGA-VQ-A91E-01 1 149916838 149916838 G A OTUD7B Missense_Mutation p.R484W 0.13 deleterious(0.02) benign(0) TCGA-VQ-A91E-01 1 150048365 150048365 A G VPS45 Missense_Mutation p.E115G 0.24 deleterious(0.02) probably_damaging(0.93) TCGA-VQ-A91E-01 1 150460445 150460445 A G TARS2 Missense_Mutation p.T60A 0.10 tolerated(0.39) benign(0.003) TCGA-VQ-A91E-01 1 150482507 150482507 C A ECM1 Intron 0.18 TCGA-VQ-A91E-01 1 152281668 152281668 C T FLG Silent p.S1898S 0.10 TCGA-VQ-A91E-01 1 152285083 152285083 T C FLG Missense_Mutation p.Q760R 0.18 possibly_damaging(0.867) TCGA-VQ-A91E-01 1 152483997 152483997 C T LCE5A 5'UTR 0.17 TCGA-VQ-A91E-01 1 154841917 154841917 A G KCNN3 Missense_Mutation p.M175T 0.16 deleterious(0.01) possibly_damaging(0.888) TCGA-VQ-A91E-01 1 154932071 154932071 G - PYGO2 Frame_Shift_Del p.F136Sfs*25 0.17 TCGA-VQ-A91E-01 1 154989058 154989058 C T ZBTB7B Missense_Mutation p.A540V 0.40 tolerated_low_confidence(0.45) benign(0.001) TCGA-VQ-A91E-01 1 155026828 155026828 T C ADAM15 Missense_Mutation p.L153P 0.13 deleterious(0) probably_damaging(0.994) TCGA-VQ-A91E-01 1 155448996 155448996 T - ASH1L Frame_Shift_Del p.K1222Rfs*11 0.17 TCGA-VQ-A91E-01 1 155721952 155721952 G A GON4L Missense_Mutation p.T2090M 0.13 tolerated_low_confidence(0.42) benign(0.001) TCGA-VQ-A91E-01 1 157062639 157062639 C A ETV3L Silent p.A296A 0.19 TCGA-VQ-A91E-01 1 157648365 157648365 T C FCRL3 3'UTR 0.33 TCGA-VQ-A91E-01 1 159860279 159860279 C T CCDC19 Missense_Mutation p.R88Q 0.16 deleterious(0) possibly_damaging(0.859) TCGA-VQ-A91E-01 1 160136404 160136404 G A ATP1A4 Silent p.T378T 0.24 TCGA-VQ-A91E-01 1 161092113 161092113 G A DEDD Missense_Mutation p.R261C 0.16 tolerated(0.08) possibly_damaging(0.908) TCGA-VQ-A91E-01 1 161476325 161476325 C T FCGR2A Missense_Mutation p.T103M 0.22 deleterious(0) possibly_damaging(0.853) TCGA-VQ-A91E-01 1 165182954 165182954 G A LMX1A Missense_Mutation p.P198L 0.20 deleterious(0) probably_damaging(0.99) TCGA-VQ-A91E-01 1 165322430 165322430 C T LMX1A Missense_Mutation p.R49Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91E-01 1 166926087 166926087 C T ILDR2 Missense_Mutation p.A128T 0.25 deleterious(0) probably_damaging(0.998) TCGA-VQ-A91E-01 1 170688974 170688974 C T PRRX1 Missense_Mutation p.H117Y 0.11 deleterious(0) probably_damaging(0.968) TCGA-VQ-A91E-01 1 171756984 171756984 A G METTL13 Missense_Mutation p.K408R 0.29 tolerated(0.17) benign(0.001) TCGA-VQ-A91E-01 1 173772302 173772302 G A CENPL Silent p.F300F 0.11 TCGA-VQ-A91E-01 1 182554856 182554856 C A RNASEL Missense_Mutation p.K362N 0.22 deleterious(0.05) probably_damaging(0.952) TCGA-VQ-A91E-01 1 184679646 184679646 A G EDEM3 Missense_Mutation p.L576P 0.19 deleterious(0) probably_damaging(0.99) TCGA-VQ-A91E-01 1 186310463 186310463 T G TPR Missense_Mutation p.N1270T 0.20 benign(0.403) TCGA-VQ-A91E-01 1 190067632 190067632 T C BRINP3 Missense_Mutation p.Q606R 0.11 tolerated(0.22) benign(0.115) TCGA-VQ-A91E-01 1 19992655 19992655 C T HTR6 Missense_Mutation p.R137C 0.20 deleterious(0) possibly_damaging(0.901) TCGA-VQ-A91E-01 1 200613554 200613554 C T DDX59 Missense_Mutation p.R563Q 0.31 tolerated(0.21) probably_damaging(0.971) TCGA-VQ-A91E-01 1 201052449 201052449 G A CACNA1S Nonsense_Mutation p.R412* 0.16 TCGA-VQ-A91E-01 1 202287312 202287312 T C LGR6 Silent p.G627G 0.31 TCGA-VQ-A91E-01 1 20234226 20234226 C T OTUD3 Missense_Mutation p.A395V 0.14 deleterious(0.03) probably_damaging(0.976) TCGA-VQ-A91E-01 1 202710657 202710657 A G KDM5B Missense_Mutation p.L928P 0.16 tolerated(0.27) benign(0.319) TCGA-VQ-A91E-01 1 203140631 203140631 C T MYBPH Missense_Mutation p.G225R 0.14 deleterious(0.01) benign(0.223) TCGA-VQ-A91E-01 1 203465273 203465273 G T OPTC Missense_Mutation p.R47L 0.15 deleterious(0.03) benign(0.104) TCGA-VQ-A91E-01 1 204125841 204125841 A G REN Missense_Mutation p.L261P 0.12 deleterious(0) probably_damaging(0.973) TCGA-VQ-A91E-01 1 204228411 204228411 C - PLEKHA6 Frame_Shift_Del p.V328Yfs*172 0.17 TCGA-VQ-A91E-01 1 20440654 20440654 G A PLA2G2D Missense_Mutation p.R131C 0.17 deleterious(0.03) benign(0.21) TCGA-VQ-A91E-01 1 204506621 204506621 T C MDM4 Missense_Mutation p.L136P 0.25 tolerated(0.14) benign(0.001) TCGA-VQ-A91E-01 1 205687542 205687542 C A NUCKS1 Nonsense_Mutation p.E200* 0.13 TCGA-VQ-A91E-01 1 21031236 21031236 G A KIF17 Missense_Mutation p.A276V 0.14 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91E-01 1 2103787 2103787 G A PRKCZ Silent p.P415P 0.11 TCGA-VQ-A91E-01 1 210857175 210857175 G A KCNH1 Silent p.S806S 0.14 TCGA-VQ-A91E-01 1 214556665 214556666 TC - PTPN14 Frame_Shift_Del p.E844Dfs*43 0.22 TCGA-VQ-A91E-01 1 214705893 214705893 C A PTPN14 Intron 0.26 TCGA-VQ-A91E-01 1 215847858 215847858 T C USH2A Silent p.K4465K 0.10 TCGA-VQ-A91E-01 1 216420292 216420292 C T USH2A Missense_Mutation p.C815Y 0.11 probably_damaging(1) TCGA-VQ-A91E-01 1 218614763 218614763 C T TGFB2 3'UTR 0.31 TCGA-VQ-A91E-01 1 220153490 220153490 A - EPRS Frame_Shift_Del p.F1216Lfs*10 0.12 TCGA-VQ-A91E-01 1 223176564 223176564 T C DISP1 Missense_Mutation p.F609L 0.18 tolerated(0.74) possibly_damaging(0.78) TCGA-VQ-A91E-01 1 227921561 227921561 C T SNAP47 5'Flank 0.18 TCGA-VQ-A91E-01 1 228109286 228109286 C T WNT9A Missense_Mutation p.R344H 0.13 tolerated(0.34) probably_damaging(0.973) TCGA-VQ-A91E-01 1 228558955 228558955 C A OBSCN Missense_Mutation p.L7783M 0.25 possibly_damaging(0.837) TCGA-VQ-A91E-01 1 233497872 233497872 G A MLK4 Missense_Mutation p.R462Q 0.12 tolerated(0.08) probably_damaging(0.999) TCGA-VQ-A91E-01 1 235324583 235324583 C T RBM34 5'UTR 0.12 TCGA-VQ-A91E-01 1 236187381 236187381 C T NID1 Missense_Mutation p.R706Q 0.20 tolerated(0.12) benign(0.014) TCGA-VQ-A91E-01 1 236734659 236734659 T C HEATR1 Missense_Mutation p.I1314V 0.23 deleterious(0.01) benign(0.128) TCGA-VQ-A91E-01 1 236746352 236746352 A T HEATR1 Missense_Mutation p.F796I 0.17 tolerated(0.09) benign(0.186) TCGA-VQ-A91E-01 1 245861588 245861588 G A KIF26B Missense_Mutation p.R2002Q 0.16 deleterious(0.01) unknown(0) TCGA-VQ-A91E-01 1 247695329 247695329 G A OR2C3 Missense_Mutation p.T162M 0.12 tolerated(0.05) possibly_damaging(0.626) TCGA-VQ-A91E-01 1 247875956 247875956 C T OR6F1 Missense_Mutation p.M34I 0.07 tolerated(0.87) benign(0.013) TCGA-VQ-A91E-01 1 27106307 27106307 G A ARID1A Nonsense_Mutation p.W1973* 0.20 TCGA-VQ-A91E-01 1 29069183 29069183 G - YTHDF2 Frame_Shift_Del p.G135Efs*26 0.12 TCGA-VQ-A91E-01 1 32131521 32131521 G A COL16A1 Nonsense_Mutation p.R1140* 0.13 TCGA-VQ-A91E-01 1 36288480 36288480 T C AGO4 Missense_Mutation p.M68T 0.15 deleterious(0) benign(0.072) TCGA-VQ-A91E-01 1 36381081 36381081 C A AGO1 Missense_Mutation p.R656S 0.21 tolerated(0.12) probably_damaging(0.999) TCGA-VQ-A91E-01 1 39893129 39893129 A - MACF1 Frame_Shift_Del p.K3379Nfs*58 0.14 TCGA-VQ-A91E-01 1 40236182 40236182 A G OXCT2 Missense_Mutation p.V249A 0.16 deleterious(0) probably_damaging(0.994) TCGA-VQ-A91E-01 1 47144125 47144125 T C EFCAB14 3'UTR 0.20 TCGA-VQ-A91E-01 1 57383363 57383363 C T C8A Missense_Mutation p.R577W 0.22 tolerated(0.12) benign(0.009) TCGA-VQ-A91E-01 1 6100687 6100687 C - AL035406.1 Frame_Shift_Del p.S9Afs*15 0.11 TCGA-VQ-A91E-01 1 6214876 6214876 C T CHD5 Missense_Mutation p.A197T 0.11 tolerated(0.55) benign(0.044) TCGA-VQ-A91E-01 1 62365270 62365272 AGA - INADL In_Frame_Del p.E1051del 0.09 TCGA-VQ-A91E-01 1 62676956 62676956 C A L1TD1 Missense_Mutation p.T837K 0.25 tolerated(0.09) probably_damaging(0.916) TCGA-VQ-A91E-01 1 63789478 63789478 C T FOXD3 Missense_Mutation p.A250V 0.15 deleterious(0.02) benign(0.015) TCGA-VQ-A91E-01 1 90048710 90048710 C T LRRC8B Silent p.R167R 0.21 TCGA-VQ-A91E-01 1 90400234 90400234 G A LRRC8D Missense_Mutation p.R536H 0.14 deleterious(0) probably_damaging(0.911) TCGA-VQ-A91E-01 1 94467318 94467318 G A ABCA4 Intron 0.36 TCGA-VQ-A91E-01 20 13463964 13463964 G A TASP1 Missense_Mutation p.R299C 0.16 deleterious(0) probably_damaging(0.967) TCGA-VQ-A91E-01 20 2290858 2290859 TG - TGM3 Frame_Shift_Del p.F74Sfs*7 0.13 TCGA-VQ-A91E-01 20 23065726 23065726 T C CD93 Silent p.E368E 0.08 TCGA-VQ-A91E-01 20 30432905 30432905 C T FOXS1 Silent p.T147T 0.21 TCGA-VQ-A91E-01 20 3065208 3065208 A G AVP Missense_Mutation p.L38P 0.12 tolerated(0.09) benign(0.03) TCGA-VQ-A91E-01 20 30784919 30784919 A G PLAGL2 Missense_Mutation p.L276P 0.09 tolerated(0.2) probably_damaging(0.979) TCGA-VQ-A91E-01 20 3215425 3215425 A - SLC4A11 Frame_Shift_Del p.F111Lfs*32 0.24 TCGA-VQ-A91E-01 20 32664892 32664892 C T RALY Silent p.S239S 0.32 TCGA-VQ-A91E-01 20 33028147 33028147 T C ITCH Silent p.P330P 0.13 TCGA-VQ-A91E-01 20 33147570 33147572 CTT - MAP1LC3A In_Frame_Del p.F84del 0.13 TCGA-VQ-A91E-01 20 3362089 3362090 - A C20orf194 Frame_Shift_Ins p.G74Wfs*9 0.13 TCGA-VQ-A91E-01 20 34021776 34021776 A G GDF5 Silent p.I479I 0.10 TCGA-VQ-A91E-01 20 35515872 35515872 T C TLDC2 Silent p.T151T 0.13 TCGA-VQ-A91E-01 20 35533765 35533765 A T SAMHD1 Splice_Site p.X470_splice 0.07 TCGA-VQ-A91E-01 20 36790000 36790000 C T TGM2 Silent p.E4E 0.07 TCGA-VQ-A91E-01 20 3783841 3783841 C T CDC25B Silent p.G448G 0.13 TCGA-VQ-A91E-01 20 40141512 40141512 T C CHD6 Silent p.S275S 0.20 TCGA-VQ-A91E-01 20 40141621 40141621 C T CHD6 Missense_Mutation p.G239E 0.16 deleterious(0.04) possibly_damaging(0.906) TCGA-VQ-A91E-01 20 41306796 41306796 G T PTPRT Missense_Mutation p.P288H 0.18 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91E-01 20 42204958 42204958 A T SGK2 Missense_Mutation p.D323V 0.11 deleterious(0.01) possibly_damaging(0.589) TCGA-VQ-A91E-01 20 42344800 42344800 A G MYBL2 3'UTR 0.12 TCGA-VQ-A91E-01 20 43945417 43945417 A C RBPJL Missense_Mutation p.S458R 0.17 deleterious(0.02) possibly_damaging(0.905) TCGA-VQ-A91E-01 20 44641949 44641949 G A MMP9 Silent p.T462T 0.13 TCGA-VQ-A91E-01 20 45131413 45131413 C A ZNF334 Missense_Mutation p.A189S 0.10 tolerated(0.53) benign(0.02) TCGA-VQ-A91E-01 20 47601972 47601972 A G ARFGEF2 Missense_Mutation p.S700G 0.26 tolerated(0.6) benign(0) TCGA-VQ-A91E-01 20 47689137 47689137 A C CSE1L Silent p.S323S 0.10 TCGA-VQ-A91E-01 20 47895500 47895500 T - ZNFX1 5'Flank 0.18 TCGA-VQ-A91E-01 20 4837735 4837735 T - SLC23A2 Frame_Shift_Del p.K612Nfs*64 0.11 TCGA-VQ-A91E-01 20 50701367 50701367 G A ZFP64 Missense_Mutation p.A556V 0.20 tolerated(0.15) probably_damaging(0.97) TCGA-VQ-A91E-01 20 5294746 5294746 C A PROKR2 Silent p.L90L 0.20 TCGA-VQ-A91E-01 20 57829837 57829837 T C ZNF831 3'UTR 0.07 TCGA-VQ-A91E-01 20 58349514 58349514 C T PHACTR3 Silent p.D381D 0.21 TCGA-VQ-A91E-01 20 58514571 58514571 G A PPP1R3D Missense_Mutation p.S139L 0.10 deleterious(0) benign(0.047) TCGA-VQ-A91E-01 20 5903320 5903320 A G CHGB Missense_Mutation p.E177G 0.09 tolerated(0.1) benign(0.186) TCGA-VQ-A91E-01 20 5963746 5963746 T C MCM8 Silent p.I556I 0.16 TCGA-VQ-A91E-01 20 60864362 60864362 C T OSBPL2 Missense_Mutation p.R409C 0.17 deleterious(0.01) probably_damaging(0.992) TCGA-VQ-A91E-01 20 61341001 61341001 C T NTSR1 Missense_Mutation p.R148C 0.13 deleterious(0) probably_damaging(0.979) TCGA-VQ-A91E-01 20 61510940 61510941 CA - DIDO1 Frame_Shift_Del p.W2123Efs*133 0.12 TCGA-VQ-A91E-01 20 61978180 61978180 G A CHRNA4 Silent p.I598I 0.12 TCGA-VQ-A91E-01 20 62328432 62328432 T C TNFRSF6B Silent p.A104A 0.27 TCGA-VQ-A91E-01 20 8630093 8630093 A G PLCB1 Silent p.S197S 0.16 TCGA-VQ-A91E-01 21 30715068 30715068 G A BACH1 Missense_Mutation p.A709T 0.18 tolerated(0.88) benign(0.005) TCGA-VQ-A91E-01 21 31964766 31964766 T A KRTAP6-3 5'UTR 0.18 TCGA-VQ-A91E-01 21 32624155 32624155 G A TIAM1 Silent p.G438G 0.13 TCGA-VQ-A91E-01 21 37741859 37741859 A G MORC3 Missense_Mutation p.I731M 0.16 deleterious(0.01) benign(0.439) TCGA-VQ-A91E-01 21 47321005 47321005 T C PCBP3 Missense_Mutation p.M106T 0.15 deleterious(0) probably_damaging(0.996) TCGA-VQ-A91E-01 21 47975933 47975933 C - DIP2A Frame_Shift_Del p.S1145Pfs*18 0.10 TCGA-VQ-A91E-01 22 16287515 16287515 T C POTEH Missense_Mutation p.D124G 0.10 deleterious_low_confidence(0.03) benign(0.008) TCGA-VQ-A91E-01 22 17600959 17600959 A T CECR6 Silent p.R353R 0.26 TCGA-VQ-A91E-01 22 18613689 18613689 G A TUBA8 Missense_Mutation p.S379N 0.14 deleterious_low_confidence(0.03) benign(0.254) TCGA-VQ-A91E-01 22 18613748 18613748 T C TUBA8 Missense_Mutation p.Y399H 0.07 deleterious_low_confidence(0.01) possibly_damaging(0.77) TCGA-VQ-A91E-01 22 19163938 19163938 T C SLC25A1 Missense_Mutation p.K273E 0.20 tolerated(0.3) benign(0.222) TCGA-VQ-A91E-01 22 22143003 22143003 T C MAPK1 Missense_Mutation p.D235G 0.18 tolerated(0.08) probably_damaging(0.922) TCGA-VQ-A91E-01 22 22287917 22287917 T C PPM1F Missense_Mutation p.D198G 0.24 deleterious(0.04) probably_damaging(1) TCGA-VQ-A91E-01 22 25243618 25243618 G A SGSM1 Missense_Mutation p.V53I 0.19 tolerated(0.05) benign(0.05) TCGA-VQ-A91E-01 22 25251369 25251369 A G SGSM1 Missense_Mutation p.D214G 0.16 deleterious(0.03) benign(0.18) TCGA-VQ-A91E-01 22 26388458 26388458 A G MYO18B Missense_Mutation p.S2096G 0.16 tolerated(0.18) benign(0.392) TCGA-VQ-A91E-01 22 31845381 31845381 C T EIF4ENIF1 Missense_Mutation p.R574Q 0.15 tolerated(0.09) benign(0.004) TCGA-VQ-A91E-01 22 37499331 37499331 G A TMPRSS6 Missense_Mutation p.R52C 0.19 tolerated(0.19) benign(0.003) TCGA-VQ-A91E-01 22 38369614 38369614 G A SOX10 Missense_Mutation p.P430L 0.24 deleterious(0) possibly_damaging(0.879) TCGA-VQ-A91E-01 22 39826124 39826124 C T TAB1 Missense_Mutation p.P471L 0.16 tolerated(0.31) benign(0.017) TCGA-VQ-A91E-01 22 39826181 39826181 T C TAB1 Missense_Mutation p.L490P 0.17 deleterious(0.01) probably_damaging(0.997) TCGA-VQ-A91E-01 22 42270017 42270017 C T SREBF2 Silent p.D361D 0.18 TCGA-VQ-A91E-01 22 46653318 46653318 A G PKDREJ Missense_Mutation p.Y1968H 0.19 deleterious(0.01) probably_damaging(0.997) TCGA-VQ-A91E-01 22 46693365 46693365 C A GTSE1 Missense_Mutation p.P23H 0.11 tolerated(0.09) benign(0.051) TCGA-VQ-A91E-01 22 50726410 50726410 G A PLXNB2 Silent p.R479R 0.36 TCGA-VQ-A91E-01 2 100210552 100210552 T C AFF3 Missense_Mutation p.K549R 0.21 tolerated(0.8) benign(0.012) TCGA-VQ-A91E-01 2 103119941 103119941 T C SLC9A4 Missense_Mutation p.M252T 0.18 deleterious(0) probably_damaging(0.997) TCGA-VQ-A91E-01 2 105979808 105979808 A G FHL2 Missense_Mutation p.Y208H 0.16 deleterious(0) probably_damaging(1) TCGA-VQ-A91E-01 2 112614257 112614258 - T ANAPC1 Splice_Site p.X484_splice 0.12 TCGA-VQ-A91E-01 2 120776730 120776730 C T EPB41L5 Nonsense_Mutation p.R24* 0.10 TCGA-VQ-A91E-01 2 128471326 128471326 G A WDR33 Nonsense_Mutation p.R1047* 0.09 TCGA-VQ-A91E-01 2 130738235 130738235 G A RAB6C Missense_Mutation p.G183R 0.26 tolerated_low_confidence(0.97) benign(0) TCGA-VQ-A91E-01 2 130956030 130956030 C T TUBA3E 5'UTR 0.25 TCGA-VQ-A91E-01 2 136513161 136513161 G A UBXN4 Silent p.A136A 0.18 TCGA-VQ-A91E-01 2 136545932 136545932 G A LCT Nonsense_Mutation p.R1916* 0.16 TCGA-VQ-A91E-01 2 136624249 136624249 C T MCM6 Missense_Mutation p.R222H 0.16 deleterious(0) probably_damaging(0.996) TCGA-VQ-A91E-01 2 141812816 141812816 G A LRP1B Missense_Mutation p.A474V 0.14 possibly_damaging(0.483) TCGA-VQ-A91E-01 2 148683686 148683686 A - ACVR2A Frame_Shift_Del p.K437Rfs*5 0.13 TCGA-VQ-A91E-01 2 152112067 152112067 A G RBM43 Missense_Mutation p.V65A 0.20 deleterious(0) probably_damaging(0.932) TCGA-VQ-A91E-01 2 158634702 158634702 C T ACVR1 Missense_Mutation p.V162M 0.07 tolerated(0.17) benign(0.443) TCGA-VQ-A91E-01 2 163074649 163074649 C A FAP Missense_Mutation p.E203D 0.15 tolerated(0.07) possibly_damaging(0.531) TCGA-VQ-A91E-01 2 164466811 164466811 C T FIGN Missense_Mutation p.A511T 0.14 tolerated(0.16) benign(0.284) TCGA-VQ-A91E-01 2 1652960 1652960 G - PXDN Frame_Shift_Del p.N865Mfs*25 0.32 TCGA-VQ-A91E-01 2 166747149 166747149 A T TTC21B Missense_Mutation p.Y1035N 0.13 deleterious(0.02) possibly_damaging(0.821) TCGA-VQ-A91E-01 2 167056234 167056234 T C SCN9A Missense_Mutation p.M1628V 0.07 deleterious(0.01) benign(0.271) TCGA-VQ-A91E-01 2 1684057 1684057 G A PXDN Missense_Mutation p.S213L 0.18 tolerated(0.16) benign(0.002) TCGA-VQ-A91E-01 2 170344624 170344624 G T BBS5 Missense_Mutation p.R129I 0.11 deleterious(0) possibly_damaging(0.881) TCGA-VQ-A91E-01 2 170403166 170403166 A G FASTKD1 Silent p.R421R 0.24 TCGA-VQ-A91E-01 2 170428530 170428530 T - FASTKD1 Frame_Shift_Del p.T4Hfs*5 0.16 TCGA-VQ-A91E-01 2 171704278 171704278 A G GAD1 Silent p.K365K 0.14 TCGA-VQ-A91E-01 2 172411227 172411227 G T CYBRD1 Missense_Mutation p.A251S 0.09 tolerated(0.61) benign(0.021) TCGA-VQ-A91E-01 2 178402942 178402942 A - AGPS 3'UTR 0.23 TCGA-VQ-A91E-01 2 179427977 179427977 C T TTN Missense_Mutation p.G27628R 0.16 TCGA-VQ-A91E-01 2 179489337 179489337 T C TTN Silent p.T14890T 0.19 TCGA-VQ-A91E-01 2 189932976 189932976 A G COL5A2 Silent p.G426G 0.07 TCGA-VQ-A91E-01 2 20200211 20200211 T - MATN3 Frame_Shift_Del p.T387Hfs*10 0.09 TCGA-VQ-A91E-01 2 202082405 202082405 G A CASP10 Missense_Mutation p.A504T 0.15 deleterious(0.03) possibly_damaging(0.805) TCGA-VQ-A91E-01 2 202899769 202899769 G A FZD7 Silent p.A133A 0.15 TCGA-VQ-A91E-01 2 203075487 203075487 T C SUMO1 Missense_Mutation p.R70G 0.16 deleterious(0.05) probably_damaging(0.95) TCGA-VQ-A91E-01 2 205829993 205829993 C T PARD3B Missense_Mutation p.A114V 0.18 tolerated(0.24) benign(0.003) TCGA-VQ-A91E-01 2 206608032 206608032 G A NRP2 Missense_Mutation p.R466H 0.15 deleterious(0.02) probably_damaging(0.999) TCGA-VQ-A91E-01 2 206617696 206617696 C T NRP2 Missense_Mutation p.P681S 0.17 tolerated(0.28) benign(0.04) TCGA-VQ-A91E-01 2 216232698 216232699 TG - FN1 Frame_Shift_Del p.T2302Sfs*9 0.10 TCGA-VQ-A91E-01 2 216236721 216236722 GA - FN1 Frame_Shift_Del p.Q2209Dfs*13 0.16 TCGA-VQ-A91E-01 2 216271077 216271077 C T FN1 Missense_Mutation p.S957N 0.13 tolerated(0.2) benign(0.004) TCGA-VQ-A91E-01 2 217543727 217543727 C T IGFBP5 Missense_Mutation p.R138Q 0.18 tolerated(0.57) possibly_damaging(0.454) TCGA-VQ-A91E-01 2 219527306 219527306 C T BCS1L Nonsense_Mutation p.R265* 0.17 TCGA-VQ-A91E-01 2 219736312 219736312 C T WNT6 Missense_Mutation p.A136V 0.36 tolerated(0.43) benign(0.012) TCGA-VQ-A91E-01 2 219894331 219894331 G A CCDC108 Missense_Mutation p.R482C 0.10 tolerated(0.23) benign(0.005) TCGA-VQ-A91E-01 2 222428706 222428706 C T EPHA4 Missense_Mutation p.A190T 0.22 deleterious(0.01) probably_damaging(0.989) TCGA-VQ-A91E-01 2 227662304 227662304 G T IRS1 Missense_Mutation p.P384H 0.14 deleterious(0.02) probably_damaging(0.998) TCGA-VQ-A91E-01 2 228235694 228235694 G T TM4SF20 Silent p.A62A 0.18 TCGA-VQ-A91E-01 2 231624708 231624708 G A CAB39 5'UTR 0.12 TCGA-VQ-A91E-01 2 235950808 235950808 C T SH3BP4 Silent p.T465T 0.22 TCGA-VQ-A91E-01 2 240009269 240009269 C A HDAC4 Missense_Mutation p.E805D 0.24 tolerated(0.55) possibly_damaging(0.64) TCGA-VQ-A91E-01 2 242196134 242196134 T - HDLBP Frame_Shift_Del p.T180Lfs*48 0.12 TCGA-VQ-A91E-01 2 242438511 242438511 G A STK25 Missense_Mutation p.R222C 0.16 deleterious(0) probably_damaging(0.995) TCGA-VQ-A91E-01 2 25966433 25966433 T C ASXL2 Missense_Mutation p.S925G 0.14 deleterious(0.02) possibly_damaging(0.886) TCGA-VQ-A91E-01 2 27359965 27359965 T C C2orf53 Silent p.S411S 0.18 TCGA-VQ-A91E-01 2 27457433 27457433 C A CAD Silent p.S1222S 0.16 TCGA-VQ-A91E-01 2 27559170 27559170 A G GTF3C2 Missense_Mutation p.L417P 0.23 deleterious(0) probably_damaging(0.986) TCGA-VQ-A91E-01 2 32703866 32703866 T C BIRC6 Missense_Mutation p.M2411T 0.09 possibly_damaging(0.885) TCGA-VQ-A91E-01 2 33809936 33809936 A T FAM98A Nonsense_Mutation p.Y488* 0.16 TCGA-VQ-A91E-01 2 38977261 38977261 C T SRSF7 Missense_Mutation p.G35D 0.21 deleterious(0) probably_damaging(1) TCGA-VQ-A91E-01 2 49190059 49190059 C T FSHR Missense_Mutation p.R634H 0.14 deleterious(0) possibly_damaging(0.881) TCGA-VQ-A91E-01 2 54080698 54080698 A - GPR75 Frame_Shift_Del p.F399Sfs*58 0.13 TCGA-VQ-A91E-01 2 65541095 65541095 T C SPRED2 Missense_Mutation p.Y266C 0.19 deleterious(0) probably_damaging(0.996) TCGA-VQ-A91E-01 2 68615554 68615556 TGA - PLEK In_Frame_Del p.D234del 0.08 TCGA-VQ-A91E-01 2 69177352 69177352 T C GKN2 Missense_Mutation p.Q37R 0.18 tolerated(0.07) possibly_damaging(0.494) TCGA-VQ-A91E-01 2 73799779 73799779 C G ALMS1 Missense_Mutation p.T3591S 0.07 benign(0.071) TCGA-VQ-A91E-01 2 74651108 74651108 A G WDR54 Missense_Mutation p.Q178R 0.25 tolerated(0.32) benign(0.034) TCGA-VQ-A91E-01 2 84806763 84806763 A G DNAH6 Missense_Mutation p.Y730C 0.22 deleterious(0) possibly_damaging(0.873) TCGA-VQ-A91E-01 2 86255161 86255161 C T POLR1A Missense_Mutation p.D1637N 0.21 tolerated(0.07) probably_damaging(1) TCGA-VQ-A91E-01 2 8926131 8926131 G A KIDINS220 Missense_Mutation p.L657F 0.15 deleterious(0.03) probably_damaging(0.936) TCGA-VQ-A91E-01 2 89399366 89399366 A G IGKV1-16 Missense_Mutation p.Y113H 0.12 tolerated(0.32) benign(0.002) TCGA-VQ-A91E-01 2 89399371 89399371 T A IGKV1-16 Missense_Mutation p.Q111L 0.12 tolerated(0.25) benign(0.008) TCGA-VQ-A91E-01 2 89399373 89399373 G A IGKV1-16 Silent p.C110C 0.15 TCGA-VQ-A91E-01 2 97039172 97039172 C T NCAPH 3'UTR 0.20 TCGA-VQ-A91E-01 2 98351082 98351082 T C ZAP70 Missense_Mutation p.L330P 0.17 deleterious(0) probably_damaging(0.974) TCGA-VQ-A91E-01 2 99812092 99812092 C T MRPL30 Missense_Mutation p.T137M 0.23 deleterious(0.02) benign(0.036) TCGA-VQ-A91E-01 3 100039673 100039673 C T TBC1D23 Missense_Mutation p.R626W 0.11 deleterious(0) probably_damaging(0.924) TCGA-VQ-A91E-01 3 111298006 111298006 G T CD96 Missense_Mutation p.G242W 0.22 deleterious(0) possibly_damaging(0.849) TCGA-VQ-A91E-01 3 119449114 119449114 G A MAATS1 Missense_Mutation p.R303H 0.28 deleterious(0) probably_damaging(0.992) TCGA-VQ-A91E-01 3 122002865 122002865 C T CASR Silent p.F698F 0.10 TCGA-VQ-A91E-01 3 126451986 126451986 C T CHCHD6 Missense_Mutation p.A111V 0.12 tolerated(0.08) possibly_damaging(0.511) TCGA-VQ-A91E-01 3 130992408 130992408 C T NEK11 Missense_Mutation p.R570C 0.09 tolerated(0.1) benign(0.026) TCGA-VQ-A91E-01 3 132207212 132207212 A G DNAJC13 Missense_Mutation p.N1113S 0.38 deleterious(0) probably_damaging(0.968) TCGA-VQ-A91E-01 3 133495988 133495988 T - TF Frame_Shift_Del p.L657Wfs*14 0.17 TCGA-VQ-A91E-01 3 13438890 13438890 G - NUP210 Frame_Shift_Del p.L135Wfs*3 0.16 TCGA-VQ-A91E-01 3 134967309 134967309 G A EPHB1 Missense_Mutation p.R883Q 0.29 tolerated(0.07) possibly_damaging(0.588) TCGA-VQ-A91E-01 3 135870358 135870358 T - MSL2 Frame_Shift_Del p.K455Nfs*37 0.08 TCGA-VQ-A91E-01 3 141904772 141904772 A G GK5 Missense_Mutation p.L272S 0.08 tolerated(0.29) probably_damaging(0.949) TCGA-VQ-A91E-01 3 142537101 142537101 T - PCOLCE2 3'UTR 0.35 TCGA-VQ-A91E-01 3 142681283 142681283 A T PAQR9 Missense_Mutation p.I299N 0.25 deleterious(0) possibly_damaging(0.637) TCGA-VQ-A91E-01 3 151154638 151154638 A G IGSF10 Missense_Mutation p.S2571P 0.28 tolerated(0.06) benign(0.443) TCGA-VQ-A91E-01 3 16217010 16217010 C T GALNT15 Missense_Mutation p.R118C 0.25 deleterious(0) possibly_damaging(0.739) TCGA-VQ-A91E-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.33 tolerated(0.11) possibly_damaging(0.529) TCGA-VQ-A91E-01 3 183908785 183908785 A G ABCF3 Splice_Site p.X464_splice 0.31 TCGA-VQ-A91E-01 3 184043719 184043719 C T EIF4G1 Nonsense_Mutation p.R1075* 0.06 TCGA-VQ-A91E-01 3 185237031 185237032 CT - LIPH Frame_Shift_Del p.S262Lfs*9 0.11 TCGA-VQ-A91E-01 3 20017556 20017556 A - RAB5A Frame_Shift_Del p.N113Ifs*15 0.20 TCGA-VQ-A91E-01 3 31621532 31621532 T A STT3B Missense_Mutation p.S219T 0.10 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91E-01 3 32571956 32571956 T C DYNC1LI1 Silent p.L379L 0.14 TCGA-VQ-A91E-01 3 37826467 37826467 G T ITGA9 Splice_Site p.X930_splice 0.33 TCGA-VQ-A91E-01 3 41288395 41288395 G A ULK4 3'UTR 0.48 TCGA-VQ-A91E-01 3 44434369 44434369 A - TCAIM Frame_Shift_Del p.S200Vfs*6 0.11 TCGA-VQ-A91E-01 3 45518034 45518034 C T LARS2 Silent p.H311H 0.24 TCGA-VQ-A91E-01 3 47305836 47305837 - C KIF9 Frame_Shift_Ins p.N308Kfs*36 0.19 TCGA-VQ-A91E-01 3 47454784 47454784 C T PTPN23 3'UTR 0.29 TCGA-VQ-A91E-01 3 48616813 48616813 C T COL7A1 Missense_Mutation p.A1766T 0.09 unknown(0) TCGA-VQ-A91E-01 3 48699464 48699464 C T CELSR3 Missense_Mutation p.A202T 0.34 tolerated_low_confidence(0.62) benign(0) TCGA-VQ-A91E-01 3 49836781 49836781 A G CDHR4 Missense_Mutation p.Y47H 0.19 tolerated(0.58) benign(0.001) TCGA-VQ-A91E-01 3 49849899 49849899 C T UBA7 Silent p.S212S 0.28 TCGA-VQ-A91E-01 3 50645878 50645881 CTCT - CISH Frame_Shift_Del p.E72Vfs*15 0.27 TCGA-VQ-A91E-01 3 51417604 51417604 C - DOCK3 Frame_Shift_Del p.P1852Qfs*45 0.31 TCGA-VQ-A91E-01 3 51990300 51990300 G A GPR62 Missense_Mutation p.R211H 0.23 tolerated(0.11) possibly_damaging(0.494) TCGA-VQ-A91E-01 3 52237999 52237999 C T ALAS1 Missense_Mutation p.S183F 0.28 deleterious(0) possibly_damaging(0.677) TCGA-VQ-A91E-01 3 52246358 52246358 A G ALAS1 Missense_Mutation p.T562A 0.15 deleterious(0) probably_damaging(0.997) TCGA-VQ-A91E-01 3 56651184 56651184 G T CCDC66 Nonsense_Mutation p.G630* 0.30 TCGA-VQ-A91E-01 3 57302494 57302494 T C APPL1 Silent p.N654N 0.12 TCGA-VQ-A91E-01 3 58141776 58141776 C T FLNB Missense_Mutation p.R2319C 0.30 deleterious(0.01) benign(0.117) TCGA-VQ-A91E-01 3 63938127 63938127 T C ATXN7 Missense_Mutation p.V156A 0.11 deleterious(0.02) benign(0.061) TCGA-VQ-A91E-01 3 71804119 71804119 C T GPR27 Missense_Mutation p.R307W 0.26 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91E-01 3 7188282 7188282 G A GRM7 Silent p.V221V 0.09 TCGA-VQ-A91E-01 3 9731796 9731796 G A MTMR14 Missense_Mutation p.G528S 0.24 tolerated(0.33) probably_damaging(0.994) TCGA-VQ-A91E-01 4 106600407 106600407 A C ARHGEF38 3'UTR 0.27 TCGA-VQ-A91E-01 4 106863859 106863859 A G NPNT Missense_Mutation p.I417V 0.16 tolerated(0.15) probably_damaging(0.959) TCGA-VQ-A91E-01 4 108866530 108866530 A - CYP2U1 Frame_Shift_Del p.I301Sfs*18 0.15 TCGA-VQ-A91E-01 4 108866548 108866548 C A CYP2U1 Missense_Mutation p.H305N 0.14 deleterious(0) probably_damaging(1) TCGA-VQ-A91E-01 4 110739236 110739236 T C GAR1 Missense_Mutation p.L120P 0.14 deleterious(0.02) benign(0.173) TCGA-VQ-A91E-01 4 110909774 110909774 C - EGF Frame_Shift_Del p.P883Lfs*67 0.16 TCGA-VQ-A91E-01 4 113303607 113303607 T C ALPK1 Missense_Mutation p.W59R 0.09 deleterious(0) probably_damaging(0.997) TCGA-VQ-A91E-01 4 113570753 113570754 - A LARP7 Frame_Shift_Ins p.T412Nfs*26 0.22 TCGA-VQ-A91E-01 4 119200402 119200402 A G PRSS12 3'Flank 0.11 TCGA-VQ-A91E-01 4 123141499 123141499 T C KIAA1109 Silent p.T829T 0.17 TCGA-VQ-A91E-01 4 123301394 123301394 C T ADAD1 Missense_Mutation p.T57M 0.21 deleterious(0.04) probably_damaging(0.986) TCGA-VQ-A91E-01 4 125593170 125593170 C T ANKRD50 Missense_Mutation p.C421Y 0.22 deleterious(0) probably_damaging(0.998) TCGA-VQ-A91E-01 4 129792641 129792641 A G JADE1 Missense_Mutation p.T585A 0.22 tolerated(0.34) benign(0.002) TCGA-VQ-A91E-01 4 13605924 13605924 C T BOD1L1 Missense_Mutation p.R867K 0.21 possibly_damaging(0.471) TCGA-VQ-A91E-01 4 138452995 138452995 T A PCDH18 Missense_Mutation p.N83I 0.19 deleterious(0.01) benign(0.367) TCGA-VQ-A91E-01 4 139965860 139965860 A G CCRN4L Silent p.K176K 0.18 TCGA-VQ-A91E-01 4 153244065 153244065 G A FBXW7 Silent p.L698L 0.11 TCGA-VQ-A91E-01 4 154624993 154624993 T C TLR2 Silent p.L312L 0.24 TCGA-VQ-A91E-01 4 155507632 155507632 C A FGA Missense_Mutation p.G317W 0.12 deleterious_low_confidence(0) benign(0.011) TCGA-VQ-A91E-01 4 159881454 159881454 T C C4orf45 Missense_Mutation p.R114G 0.13 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91E-01 4 166794997 166794997 G A TLL1 5'UTR 0.18 TCGA-VQ-A91E-01 4 17585226 17585226 A - LAP3 Frame_Shift_Del p.K169Rfs*34 0.21 TCGA-VQ-A91E-01 4 184182429 184182429 C A WWC2 Silent p.S551S 0.17 TCGA-VQ-A91E-01 4 186570699 186570699 G A SORBS2 Missense_Mutation p.A264V 0.25 tolerated(0.37) benign(0.006) TCGA-VQ-A91E-01 4 188923915 188923915 T C ZFP42 5'UTR 0.25 TCGA-VQ-A91E-01 4 26432638 26432638 T C RBPJ 3'UTR 0.21 TCGA-VQ-A91E-01 4 27024651 27024651 G T STIM2 3'UTR 0.16 TCGA-VQ-A91E-01 4 2986251 2986251 A - GRK4 Frame_Shift_Del p.S24Vfs*11 0.21 TCGA-VQ-A91E-01 4 38134795 38134795 A G TBC1D1 Missense_Mutation p.S1075G 0.23 tolerated(0.34) benign(0.007) TCGA-VQ-A91E-01 4 39233816 39233816 T C WDR19 Missense_Mutation p.L726P 0.21 deleterious(0.01) probably_damaging(0.944) TCGA-VQ-A91E-01 4 39254885 39254885 C A WDR19 Missense_Mutation p.S950Y 0.22 deleterious(0) probably_damaging(0.998) TCGA-VQ-A91E-01 4 42041027 42041027 T - SLC30A9 Frame_Shift_Del p.F233Lfs*8 0.14 TCGA-VQ-A91E-01 4 47788834 47788834 C T CORIN Missense_Mutation p.S106N 0.16 tolerated(0.15) benign(0.005) TCGA-VQ-A91E-01 4 48859372 48859372 A - OCIAD1 Frame_Shift_Del p.E233Kfs*4 0.16 TCGA-VQ-A91E-01 4 52894220 52894220 G A SGCB Missense_Mutation p.R223C 0.16 deleterious(0.01) possibly_damaging(0.823) TCGA-VQ-A91E-01 4 76912030 76912030 A - SDAD1 5'UTR 0.18 TCGA-VQ-A91E-01 4 79351541 79351541 A G FRAS1 Missense_Mutation p.T1647A 0.16 benign(0.002) TCGA-VQ-A91E-01 4 79494381 79494381 A G ANXA3 Silent p.S21S 0.16 TCGA-VQ-A91E-01 4 8009720 8009720 C T ABLIM2 Intron 0.26 TCGA-VQ-A91E-01 4 81967619 81967619 G A BMP3 Silent p.T348T 0.12 TCGA-VQ-A91E-01 4 83793119 83793119 G A SEC31A Missense_Mutation p.R254C 0.14 deleterious(0) possibly_damaging(0.766) TCGA-VQ-A91E-01 4 87691001 87691001 G T PTPN13 Silent p.P1528P 0.11 TCGA-VQ-A91E-01 4 88584484 88584484 C A DMP1 3'UTR 0.10 TCGA-VQ-A91E-01 4 96036841 96036841 T G BMPR1B Silent p.T114T 0.20 TCGA-VQ-A91E-01 4 98480190 98480190 T - STPG2 3'UTR 0.17 TCGA-VQ-A91E-01 5 115783299 115783299 G A SEMA6A Silent p.S701S 0.12 TCGA-VQ-A91E-01 5 1221289 1221289 T C SLC6A19 Missense_Mutation p.M521T 0.21 deleterious(0) possibly_damaging(0.882) TCGA-VQ-A91E-01 5 129241288 129241288 T C CHSY3 Missense_Mutation p.W256R 0.22 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91E-01 5 140242427 140242427 G A AC005609.1 Silent p.G183G 0.28 TCGA-VQ-A91E-01 5 140263638 140263638 C T PCDHA13 Silent p.R595R 0.19 TCGA-VQ-A91E-01 5 140433276 140433276 G T PCDHB1 Missense_Mutation p.V741L 0.12 tolerated(0.16) benign(0.014) TCGA-VQ-A91E-01 5 140476041 140476041 C T PCDHB2 Missense_Mutation p.A556V 0.10 tolerated_low_confidence(0.09) benign(0.041) TCGA-VQ-A91E-01 5 140516354 140516354 C T PCDHB5 Silent p.N446N 0.16 TCGA-VQ-A91E-01 5 140536897 140536897 C T PCDHB17 Missense_Mutation p.R441W 0.15 tolerated_low_confidence(0.07) probably_damaging(0.943) TCGA-VQ-A91E-01 5 140769716 140769716 A G PCDHGB4 Silent p.A755A 0.16 TCGA-VQ-A91E-01 5 145537044 145537044 T - LARS Frame_Shift_Del p.A330Qfs*23 0.13 TCGA-VQ-A91E-01 5 149003639 149003639 C T ARHGEF37 Missense_Mutation p.T467M 0.20 deleterious(0.01) possibly_damaging(0.696) TCGA-VQ-A91E-01 5 153830756 153830756 G A SAP30L Missense_Mutation p.D103N 0.25 deleterious(0.05) benign(0.262) TCGA-VQ-A91E-01 5 154346306 154346306 G A MRPL22 Missense_Mutation p.R157H 0.12 tolerated(0.21) benign(0.004) TCGA-VQ-A91E-01 5 156731295 156731295 C T CYFIP2 Missense_Mutation p.A213V 0.16 tolerated(0.2) benign(0.049) TCGA-VQ-A91E-01 5 176886195 176886195 C T DBN1 Missense_Mutation p.A346T 0.22 tolerated(0.08) probably_damaging(0.984) TCGA-VQ-A91E-01 5 180036920 180036920 G T FLT4 Silent p.T1264T 0.23 TCGA-VQ-A91E-01 5 180661464 180661464 T G TRIM41 Missense_Mutation p.S528A 0.20 deleterious(0.05) possibly_damaging(0.64) TCGA-VQ-A91E-01 5 21802290 21802290 G A CDH12 Silent p.G414G 0.24 TCGA-VQ-A91E-01 5 37064899 37064899 A - NIPBL Frame_Shift_Del p.I2776Lfs*3 0.17 TCGA-VQ-A91E-01 5 37065027 37065027 T - NIPBL 3'UTR 0.20 TCGA-VQ-A91E-01 5 37329357 37329357 C A NUP155 Missense_Mutation p.R583I 0.19 tolerated(0.09) benign(0.007) TCGA-VQ-A91E-01 5 37341308 37341308 T C NUP155 Missense_Mutation p.Q377R 0.18 tolerated(0.43) benign(0.148) TCGA-VQ-A91E-01 5 37396540 37396540 T C WDR70 Silent p.P120P 0.17 TCGA-VQ-A91E-01 5 55466624 55466624 G A ANKRD55 Missense_Mutation p.L107F 0.16 tolerated(0.14) probably_damaging(1) TCGA-VQ-A91E-01 5 64872778 64872778 C T PPWD1 Missense_Mutation p.R348C 0.17 deleterious(0) probably_damaging(0.95) TCGA-VQ-A91E-01 5 71492292 71492292 A - MAP1B Frame_Shift_Del p.M1039Wfs*7 0.14 TCGA-VQ-A91E-01 5 72201262 72201262 C A TNPO1 3'UTR 0.07 TCGA-VQ-A91E-01 5 74130365 74130365 T C FAM169A Missense_Mutation p.K126E 0.14 tolerated(0.16) possibly_damaging(0.623) TCGA-VQ-A91E-01 5 79025906 79025906 T C CMYA5 Missense_Mutation p.S440P 0.17 benign(0.029) TCGA-VQ-A91E-01 5 79054598 79054598 A G CMYA5 Silent p.E3711E 0.18 TCGA-VQ-A91E-01 5 79616640 79616640 C T SPZ1 Silent p.T202T 0.09 TCGA-VQ-A91E-01 5 82837774 82837774 T C VCAN Silent p.Y2984Y 0.13 TCGA-VQ-A91E-01 6 10709740 10709740 T C PAK1IP1 3'UTR 0.21 TCGA-VQ-A91E-01 6 110947997 110947997 T C CDK19 Missense_Mutation p.K281R 0.07 tolerated(0.12) benign(0.12) TCGA-VQ-A91E-01 6 116441592 116441592 G A COL10A1 Missense_Mutation p.P563S 0.06 deleterious(0.04) probably_damaging(1) TCGA-VQ-A91E-01 6 116720817 116720817 C T DSE Missense_Mutation p.A135V 0.10 deleterious(0.03) possibly_damaging(0.794) TCGA-VQ-A91E-01 6 117708060 117708060 T A ROS1 Missense_Mutation p.N706I 0.48 deleterious(0) probably_damaging(0.951) TCGA-VQ-A91E-01 6 129828769 129828769 A G LAMA2 Missense_Mutation p.T2947A 0.16 deleterious(0) benign(0.388) TCGA-VQ-A91E-01 6 135787241 135787241 G A AHI1 Missense_Mutation p.H154Y 0.20 tolerated(0.17) benign(0.001) TCGA-VQ-A91E-01 6 136599067 136599067 G A BCLAF1 Missense_Mutation p.R318C 0.10 deleterious_low_confidence(0.04) benign(0.003) TCGA-VQ-A91E-01 6 151674799 151674799 C T AKAP12 Missense_Mutation p.A1758V 0.41 deleterious(0) benign(0.089) TCGA-VQ-A91E-01 6 154567852 154567852 A G IPCEF1 Missense_Mutation p.L40P 0.26 deleterious(0) probably_damaging(1) TCGA-VQ-A91E-01 6 15496722 15496722 G - JARID2 Frame_Shift_Del p.R425Gfs*36 0.33 TCGA-VQ-A91E-01 6 155458628 155458628 G - TIAM2 Frame_Shift_Del p.V506Wfs*35 0.34 TCGA-VQ-A91E-01 6 16306907 16306907 C T ATXN1 Missense_Mutation p.V701M 0.33 tolerated(0.42) benign(0.005) TCGA-VQ-A91E-01 6 169621615 169621615 G A THBS2 Missense_Mutation p.T1094I 0.07 tolerated(0.44) probably_damaging(0.974) TCGA-VQ-A91E-01 6 170594674 170594674 C - DLL1 Frame_Shift_Del p.G282Afs*8 0.33 TCGA-VQ-A91E-01 6 170599211 170599211 G A DLL1 Missense_Mutation p.A6V 0.24 tolerated(0.24) benign(0.091) TCGA-VQ-A91E-01 6 170858134 170858134 A C PSMB1 Missense_Mutation p.F61V 0.42 deleterious(0) benign(0.114) TCGA-VQ-A91E-01 6 21000464 21000464 G A CDKAL1 Missense_Mutation p.A306T 0.32 deleterious(0.01) possibly_damaging(0.718) TCGA-VQ-A91E-01 6 24423946 24423946 T - MRS2 3'UTR 0.71 TCGA-VQ-A91E-01 6 26199854 26199856 AGA - HIST1H2BF In_Frame_Del p.K25del 0.31 TCGA-VQ-A91E-01 6 29641359 29641359 A - ZFP57 Frame_Shift_Del p.C177Afs*25 0.24 TCGA-VQ-A91E-01 6 30078223 30078224 - C TRIM31 Splice_Site p.X248_splice 0.31 TCGA-VQ-A91E-01 6 30672791 30672791 C T MDC1 Missense_Mutation p.R1390Q 0.30 tolerated(0.61) benign(0.001) TCGA-VQ-A91E-01 6 31609347 31609347 G A BAG6 Missense_Mutation p.T813M 0.29 deleterious(0.03) benign(0.386) TCGA-VQ-A91E-01 6 31802943 31802943 A G C6orf48 5'UTR 0.45 TCGA-VQ-A91E-01 6 32146345 32146346 - G RNF5 Frame_Shift_Ins p.A21Gfs*8 0.27 TCGA-VQ-A91E-01 6 32820252 32820252 C T TAP1 Missense_Mutation p.G269D 0.10 deleterious(0) probably_damaging(1) TCGA-VQ-A91E-01 6 33148102 33148102 G - COL11A2 Frame_Shift_Del p.P345Lfs*79 0.19 TCGA-VQ-A91E-01 6 33166131 33166131 A G RXRB Silent p.P198P 0.16 TCGA-VQ-A91E-01 6 33652436 33652436 G - ITPR3 Frame_Shift_Del p.D1705Tfs*6 0.25 TCGA-VQ-A91E-01 6 34614401 34614401 G A C6orf106 Missense_Mutation p.T163I 0.33 deleterious(0) probably_damaging(0.979) TCGA-VQ-A91E-01 6 35765035 35765035 C T CLPS Missense_Mutation p.A11T 0.10 tolerated(0.74) benign(0.001) TCGA-VQ-A91E-01 6 43166358 43166358 C A CUL9 Missense_Mutation p.P939T 0.14 deleterious(0.04) benign(0.044) TCGA-VQ-A91E-01 6 43418920 43418920 C T DLK2 Missense_Mutation p.R170H 0.45 tolerated(0.53) benign(0.002) TCGA-VQ-A91E-01 6 44121516 44121516 C T TMEM63B Silent p.N682N 0.25 TCGA-VQ-A91E-01 6 56504248 56504248 A G DST Silent p.A416A 0.33 TCGA-VQ-A91E-01 6 70423548 70423548 G A LMBRD1 Missense_Mutation p.R302C 0.26 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91E-01 6 7301543 7301543 G A SSR1 Silent p.N181N 0.22 TCGA-VQ-A91E-01 6 7404715 7404715 G A RIOK1 Missense_Mutation p.V307I 0.08 tolerated(0.36) benign(0.026) TCGA-VQ-A91E-01 6 87966812 87966812 T - ZNF292 Frame_Shift_Del p.L1157Cfs*5 0.20 TCGA-VQ-A91E-01 6 94120347 94120347 A G EPHA7 Missense_Mutation p.V235A 0.38 deleterious(0) probably_damaging(0.985) TCGA-VQ-A91E-01 7 100028354 100028354 C T MEPCE Missense_Mutation p.P238L 0.11 deleterious(0.03) probably_damaging(0.999) TCGA-VQ-A91E-01 7 100192801 100192801 C - FBXO24 Frame_Shift_Del p.L383Wfs*45 0.19 TCGA-VQ-A91E-01 7 100385626 100385626 T C ZAN Silent p.P2364P 0.11 TCGA-VQ-A91E-01 7 100491575 100491575 A G ACHE Silent p.A93A 0.20 TCGA-VQ-A91E-01 7 102950791 102950791 T C PMPCB Silent p.T341T 0.15 TCGA-VQ-A91E-01 7 103008542 103008542 T C PSMC2 3'UTR 0.23 TCGA-VQ-A91E-01 7 103322698 103322698 T C RELN Missense_Mutation p.Q385R 0.20 tolerated(0.23) probably_damaging(0.953) TCGA-VQ-A91E-01 7 110764807 110764807 G A LRRN3 Missense_Mutation p.S660N 0.10 tolerated(0.56) benign(0.001) TCGA-VQ-A91E-01 7 111541792 111541792 C T DOCK4 Missense_Mutation p.V420M 0.12 deleterious(0) probably_damaging(0.996) TCGA-VQ-A91E-01 7 111976201 111976201 C T ZNF277 Missense_Mutation p.R282W 0.20 deleterious(0) possibly_damaging(0.462) TCGA-VQ-A91E-01 7 114282609 114282609 C A FOXP2 Missense_Mutation p.A332E 0.18 tolerated(0.24) unknown(0) TCGA-VQ-A91E-01 7 11582590 11582590 T - THSD7A Frame_Shift_Del p.G537Afs*4 0.15 TCGA-VQ-A91E-01 7 116140387 116140387 C T CAV2 Missense_Mutation p.A75V 0.13 deleterious(0.01) probably_damaging(1) TCGA-VQ-A91E-01 7 121652517 121652517 G A PTPRZ1 Silent p.S1139S 0.11 TCGA-VQ-A91E-01 7 122261734 122261734 T G CADPS2 Missense_Mutation p.E302A 0.11 deleterious(0) possibly_damaging(0.899) TCGA-VQ-A91E-01 7 128846204 128846204 G T SMO Silent p.V378V 0.20 TCGA-VQ-A91E-01 7 129122852 129122852 G A STRIP2 Missense_Mutation p.R740H 0.12 deleterious(0) probably_damaging(0.993) TCGA-VQ-A91E-01 7 133986567 133986567 G A SLC35B4 Nonsense_Mutation p.Q145* 0.17 TCGA-VQ-A91E-01 7 135302432 135302432 T C NUP205 Splice_Site p.X1257_splice 0.19 TCGA-VQ-A91E-01 7 140048465 140048465 C T SLC37A3 Missense_Mutation p.D329N 0.17 tolerated(0.05) probably_damaging(0.997) TCGA-VQ-A91E-01 7 142627527 142627527 G T TRPV5 Missense_Mutation p.P48Q 0.11 deleterious(0) probably_damaging(0.95) TCGA-VQ-A91E-01 7 142919553 142919553 C T TAS2R40 Missense_Mutation p.H128Y 0.18 tolerated(0.62) benign(0.03) TCGA-VQ-A91E-01 7 143270334 143270334 A G CTAGE15 Missense_Mutation p.N475S 0.22 deleterious(0.04) benign(0.205) TCGA-VQ-A91E-01 7 150440111 150440111 T - GIMAP5 Frame_Shift_Del p.F297Sfs*30 0.12 TCGA-VQ-A91E-01 7 150491089 150491089 A G TMEM176B Missense_Mutation p.V92A 0.11 tolerated(0.09) benign(0.007) TCGA-VQ-A91E-01 7 150746053 150746053 C T ASIC3 Silent p.H27H 0.18 TCGA-VQ-A91E-01 7 150945721 150945721 T C SMARCD3 5'UTR 0.12 TCGA-VQ-A91E-01 7 156437370 156437370 A - RNF32 Frame_Shift_Del p.T67Lfs*7 0.09 TCGA-VQ-A91E-01 7 18688201 18688201 T G HDAC9 Silent p.S454S 0.15 TCGA-VQ-A91E-01 7 1937983 1937983 C T MAD1L1 Silent p.R617R 0.15 TCGA-VQ-A91E-01 7 21675644 21675644 T C DNAH11 Silent p.C1557C 0.18 TCGA-VQ-A91E-01 7 21920427 21920427 C T DNAH11 Silent p.G4108G 0.15 TCGA-VQ-A91E-01 7 22206706 22206706 C T RAPGEF5 Missense_Mutation p.C269Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91E-01 7 22533151 22533151 T C STEAP1B Missense_Mutation p.Y130C 0.17 deleterious(0) probably_damaging(1) TCGA-VQ-A91E-01 7 23300373 23300373 A - GPNMB Frame_Shift_Del p.K334Nfs*6 0.11 TCGA-VQ-A91E-01 7 24689288 24689288 A G MPP6 Missense_Mutation p.S110G 0.07 tolerated(0.13) benign(0.03) TCGA-VQ-A91E-01 7 24874186 24874186 C T OSBPL3 Silent p.T555T 0.17 TCGA-VQ-A91E-01 7 2979478 2979478 T C CARD11 Missense_Mutation p.I257V 0.14 tolerated(0.25) possibly_damaging(0.644) TCGA-VQ-A91E-01 7 31378635 31378635 T - NEUROD6 Frame_Shift_Del p.K83Rfs*35 0.38 TCGA-VQ-A91E-01 7 31904557 31904557 G A PDE1C Missense_Mutation p.A310V 0.12 tolerated(0.79) benign(0.004) TCGA-VQ-A91E-01 7 34182924 34182925 - AG BMPER Frame_Shift_Ins p.G613Rfs*81 0.20 TCGA-VQ-A91E-01 7 37956022 37956022 T C SFRP4 Missense_Mutation p.T40A 0.15 deleterious(0) probably_damaging(0.98) TCGA-VQ-A91E-01 7 42003908 42003908 C T GLI3 3'UTR 0.16 TCGA-VQ-A91E-01 7 43484411 43484411 C T HECW1 Missense_Mutation p.A547V 0.16 deleterious_low_confidence(0) possibly_damaging(0.764) TCGA-VQ-A91E-01 7 44198815 44198815 G A GCK 5'UTR 0.25 TCGA-VQ-A91E-01 7 47925608 47925608 C A PKD1L1 Missense_Mutation p.G961C 0.18 deleterious(0.01) probably_damaging(0.99) TCGA-VQ-A91E-01 7 48015283 48015283 A G HUS1 Missense_Mutation p.V156A 0.12 tolerated(0.11) probably_damaging(0.935) TCGA-VQ-A91E-01 7 4821336 4821336 C T AP5Z1 Missense_Mutation p.T106M 0.17 tolerated(0.28) benign(0.027) TCGA-VQ-A91E-01 7 50531075 50531075 T - DDC Frame_Shift_Del p.I433Sfs*98 0.23 TCGA-VQ-A91E-01 7 5331344 5331344 C A SLC29A4 Missense_Mutation p.P146T 0.09 tolerated(0.78) benign(0.002) TCGA-VQ-A91E-01 7 56122119 56122119 A T CCT6A Missense_Mutation p.I87L 0.05 deleterious(0.01) benign(0.107) TCGA-VQ-A91E-01 7 66770985 66770985 T C STAG3L4 RNA 0.09 TCGA-VQ-A91E-01 7 72663998 72663998 T G GTF2IRD2P1 RNA 0.40 TCGA-VQ-A91E-01 7 73008294 73008294 G A MLXIPL Silent p.R820R 0.20 TCGA-VQ-A91E-01 7 73115132 73115132 G A STX1A Silent p.H239H 0.08 TCGA-VQ-A91E-01 7 75182803 75182803 G A HIP1 Silent p.A748A 0.08 TCGA-VQ-A91E-01 7 75184771 75184771 C T HIP1 Missense_Mutation p.A638T 0.19 deleterious(0.03) benign(0.019) TCGA-VQ-A91E-01 7 77423675 77423675 C T TMEM60 Missense_Mutation p.A6T 0.16 tolerated(0.09) benign(0.36) TCGA-VQ-A91E-01 7 82543947 82543947 G T PCLO Intron 0.33 TCGA-VQ-A91E-01 7 86569340 86569340 T - KIAA1324L Frame_Shift_Del p.N278Ifs*47 0.15 TCGA-VQ-A91E-01 7 87053256 87053256 G A ABCB4 Missense_Mutation p.P726L 0.17 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91E-01 7 87465664 87465664 C T SLC25A40 Missense_Mutation p.R306H 0.19 deleterious(0.01) possibly_damaging(0.529) TCGA-VQ-A91E-01 7 92354973 92354973 G A CDK6 Silent p.R168R 0.12 TCGA-VQ-A91E-01 7 94228153 94228153 T C SGCE Missense_Mutation p.E396G 0.09 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91E-01 7 95165762 95165762 G T ASB4 Missense_Mutation p.C331F 0.10 deleterious(0) probably_damaging(0.973) TCGA-VQ-A91E-01 7 97874294 97874294 C T TECPR1 Missense_Mutation p.R104Q 0.16 tolerated(0.77) benign(0.011) TCGA-VQ-A91E-01 7 98988834 98988834 G A ARPC1B Silent p.L247L 0.21 TCGA-VQ-A91E-01 7 99056806 99056806 C T ATP5J2 Missense_Mutation p.V74M 0.15 tolerated(0.15) benign(0.22) TCGA-VQ-A91E-01 8 100732635 100732635 C A VPS13B Nonsense_Mutation p.Y2265* 0.23 TCGA-VQ-A91E-01 8 102656387 102656387 C T GRHL2 Missense_Mutation p.R516W 0.10 tolerated(0.18) possibly_damaging(0.677) TCGA-VQ-A91E-01 8 105503000 105503000 C A LRP12 Missense_Mutation p.E827D 0.14 tolerated_low_confidence(0.06) benign(0.289) TCGA-VQ-A91E-01 8 106813627 106813627 C T ZFPM2 Silent p.D439D 0.11 TCGA-VQ-A91E-01 8 109491273 109491273 A - EMC2 Frame_Shift_Del p.T249Rfs*6 0.12 TCGA-VQ-A91E-01 8 11162482 11162482 C T MTMR9 Missense_Mutation p.R184C 0.15 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91E-01 8 113516187 113516187 A G CSMD3 Missense_Mutation p.Y1639H 0.12 tolerated(0.06) probably_damaging(0.994) TCGA-VQ-A91E-01 8 121015322 121015322 C - DEPTOR Frame_Shift_Del p.P301Lfs*10 0.29 TCGA-VQ-A91E-01 8 121530088 121530088 T C MTBP Intron 0.21 TCGA-VQ-A91E-01 8 122641494 122641494 A C HAS2 Silent p.A29A 0.10 TCGA-VQ-A91E-01 8 124820546 124820546 T C FAM91A1 Silent p.N689N 0.16 TCGA-VQ-A91E-01 8 126069843 126069843 G A KIAA0196 Silent p.S610S 0.18 TCGA-VQ-A91E-01 8 131072856 131072856 G A ASAP1 Missense_Mutation p.T1054M 0.15 tolerated(0.16) benign(0.005) TCGA-VQ-A91E-01 8 135614976 135614976 T C ZFAT Missense_Mutation p.D329G 0.11 deleterious(0.02) probably_damaging(0.998) TCGA-VQ-A91E-01 8 144811386 144811386 G A FAM83H Silent p.N185N 0.16 TCGA-VQ-A91E-01 8 144899808 144899808 G A PUF60 Missense_Mutation p.A321V 0.08 deleterious(0.05) possibly_damaging(0.855) TCGA-VQ-A91E-01 8 144900162 144900162 G A PUF60 Silent p.Y229Y 0.08 TCGA-VQ-A91E-01 8 144993314 144993314 T C PLEC Missense_Mutation p.T3696A 0.11 possibly_damaging(0.54) TCGA-VQ-A91E-01 8 144995254 144995254 G A PLEC Missense_Mutation p.A3049V 0.12 benign(0.091) TCGA-VQ-A91E-01 8 146067263 146067263 A C ZNF7 Missense_Mutation p.K257N 0.07 deleterious(0.04) probably_damaging(0.998) TCGA-VQ-A91E-01 8 1497721 1497721 C T DLGAP2 Missense_Mutation p.R288C 0.18 deleterious(0) probably_damaging(1) TCGA-VQ-A91E-01 8 17396370 17396370 C G SLC7A2 Missense_Mutation p.L13V 0.11 deleterious_low_confidence(0) benign(0) TCGA-VQ-A91E-01 8 17827123 17827123 A T PCM1 Silent p.G1150G 0.23 TCGA-VQ-A91E-01 8 17827127 17827127 T C PCM1 Missense_Mutation p.F1152L 0.17 deleterious(0.01) probably_damaging(0.958) TCGA-VQ-A91E-01 8 1905340 1905340 C T ARHGEF10 Missense_Mutation p.R1316C 0.17 deleterious(0.02) probably_damaging(1) TCGA-VQ-A91E-01 8 22424636 22424636 T C SORBS3 Missense_Mutation p.L418P 0.09 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91E-01 8 22487516 22487516 A G BIN3 Missense_Mutation p.V100A 0.20 tolerated(1) benign(0.046) TCGA-VQ-A91E-01 8 23290570 23290570 C A ENTPD4 Missense_Mutation p.V574L 0.12 tolerated(0.09) benign(0.142) TCGA-VQ-A91E-01 8 24350675 24350675 T - ADAM7 Frame_Shift_Del p.L594Yfs*29 0.17 TCGA-VQ-A91E-01 8 25174578 25174580 GAA - DOCK5 In_Frame_Del p.K461del 0.11 TCGA-VQ-A91E-01 8 25340950 25340950 T G CDCA2 Silent p.T356T 0.11 TCGA-VQ-A91E-01 8 27361282 27361282 T C EPHX2 Splice_Site p.X116_splice 0.11 TCGA-VQ-A91E-01 8 28574586 28574586 T C EXTL3 Missense_Mutation p.V337A 0.12 tolerated(1) benign(0.007) TCGA-VQ-A91E-01 8 28575202 28575202 C T EXTL3 Silent p.A542A 0.13 TCGA-VQ-A91E-01 8 32453427 32453427 C A NRG1 Missense_Mutation p.S61Y 0.15 deleterious(0) probably_damaging(0.935) TCGA-VQ-A91E-01 8 37690604 37690604 G - GPR124 Frame_Shift_Del p.G393Vfs*40 0.12 TCGA-VQ-A91E-01 8 38153426 38153426 G A WHSC1L1 Missense_Mutation p.P935S 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A91E-01 8 39613417 39613417 C T ADAM2 Missense_Mutation p.G543R 0.10 deleterious(0) probably_damaging(0.996) TCGA-VQ-A91E-01 8 39873097 39873097 G T IDO2 Missense_Mutation p.E413D 0.11 tolerated(0.24) benign(0.036) TCGA-VQ-A91E-01 8 41801275 41801275 C T KAT6A Missense_Mutation p.R740H 0.10 benign(0.378) TCGA-VQ-A91E-01 8 42022587 42022587 A G AP3M2 Splice_Site p.X195_splice 0.13 TCGA-VQ-A91E-01 8 42857254 42857254 T A HOOK3 Missense_Mutation p.V542D 0.10 tolerated(0.62) benign(0.11) TCGA-VQ-A91E-01 8 57218205 57218205 T - SDR16C5 Frame_Shift_Del p.M263Cfs*12 0.17 TCGA-VQ-A91E-01 8 65528674 65528674 A G CYP7B1 Missense_Mutation p.Y142H 0.14 deleterious(0) probably_damaging(0.998) TCGA-VQ-A91E-01 8 67039470 67039470 C T TRIM55 5'UTR 0.14 TCGA-VQ-A91E-01 8 71036967 71036967 G - NCOA2 Frame_Shift_Del p.S1351Pfs*3 0.12 TCGA-VQ-A91E-01 8 71057068 71057068 C T NCOA2 Missense_Mutation p.R874Q 0.17 tolerated(0.35) possibly_damaging(0.883) TCGA-VQ-A91E-01 8 86057678 86057678 A - LRRCC1 Frame_Shift_Del p.T1013Qfs*13 0.20 TCGA-VQ-A91E-01 8 87558862 87558862 A - CPNE3 Frame_Shift_Del p.S260Afs*10 0.16 TCGA-VQ-A91E-01 8 87641283 87641283 A G CNGB3 Silent p.A448A 0.17 TCGA-VQ-A91E-01 8 95777968 95777968 T C DPY19L4 Silent p.A344A 0.14 TCGA-VQ-A91E-01 8 98703238 98703239 TG - MTDH Frame_Shift_Del p.V291Kfs*10 0.21 TCGA-VQ-A91E-01 9 100245458 100245458 A G TDRD7 Missense_Mutation p.M914V 0.11 deleterious(0) possibly_damaging(0.53) TCGA-VQ-A91E-01 9 104335662 104335662 G - GRIN3A Frame_Shift_Del p.L1048Sfs*21 0.13 TCGA-VQ-A91E-01 9 107361611 107361611 A - OR13C5 Frame_Shift_Del p.F28Lfs*6 0.12 TCGA-VQ-A91E-01 9 114359684 114359684 A G PTGR1 Missense_Mutation p.W7R 0.12 deleterious(0) probably_damaging(0.988) TCGA-VQ-A91E-01 9 116053188 116053188 G A PRPF4 Missense_Mutation p.A423T 0.24 deleterious(0.01) probably_damaging(0.936) TCGA-VQ-A91E-01 9 125154768 125154768 C T PTGS1 Missense_Mutation p.P582L 0.09 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91E-01 9 125391334 125391334 G A OR1B1 Missense_Mutation p.R161C 0.13 deleterious(0) benign(0.04) TCGA-VQ-A91E-01 9 126776248 126776248 G A LHX2 Silent p.P43P 0.12 TCGA-VQ-A91E-01 9 130286083 130286083 G T FAM129B Missense_Mutation p.P155H 0.17 deleterious(0.02) probably_damaging(0.993) TCGA-VQ-A91E-01 9 131847882 131847882 G T DOLPP1 Missense_Mutation p.V150F 0.10 deleterious(0) probably_damaging(0.976) TCGA-VQ-A91E-01 9 134020087 134020087 T C NUP214 Missense_Mutation p.M572T 0.14 benign(0.026) TCGA-VQ-A91E-01 9 134165672 134165672 G - PPAPDC3 Frame_Shift_Del p.V98Cfs*37 0.12 TCGA-VQ-A91E-01 9 135204893 135204894 - A SETX Frame_Shift_Ins p.T698Yfs*2 0.18 TCGA-VQ-A91E-01 9 136337147 136337147 C T SLC2A6 Missense_Mutation p.R507H 0.16 tolerated_low_confidence(0.23) benign(0.003) TCGA-VQ-A91E-01 9 136555517 136555517 A G SARDH Missense_Mutation p.I685T 0.12 deleterious(0.02) possibly_damaging(0.555) TCGA-VQ-A91E-01 9 137622234 137622234 G - COL5A1 Frame_Shift_Del p.E361Rfs*197 0.11 TCGA-VQ-A91E-01 9 139008581 139008581 A G C9orf69 Missense_Mutation p.F56L 0.26 tolerated(0.31) probably_damaging(0.955) TCGA-VQ-A91E-01 9 139299565 139299565 T G SDCCAG3 Missense_Mutation p.E328A 0.20 deleterious(0.01) probably_damaging(0.993) TCGA-VQ-A91E-01 9 139391171 139391171 G - NOTCH1 Frame_Shift_Del p.S2341Pfs*7 0.13 TCGA-VQ-A91E-01 9 139912449 139912449 G T ABCA2 Missense_Mutation p.P691H 0.11 deleterious(0) probably_damaging(1) TCGA-VQ-A91E-01 9 140347605 140347605 G A NSMF Missense_Mutation p.T317M 0.20 deleterious(0) probably_damaging(0.947) TCGA-VQ-A91E-01 9 17143363 17143363 G T CNTLN Missense_Mutation p.L146F 0.11 deleterious(0) benign(0.429) TCGA-VQ-A91E-01 9 22451295 22451295 G A DMRTA1 Silent p.L300L 0.13 TCGA-VQ-A91E-01 9 26910379 26910379 T - PLAA Frame_Shift_Del p.E539Rfs*14 0.08 TCGA-VQ-A91E-01 9 311974 311974 C T DOCK8 Silent p.N183N 0.11 TCGA-VQ-A91E-01 9 32543555 32543557 ATG - TOPORS In_Frame_Del p.I322del 0.18 TCGA-VQ-A91E-01 9 34371962 34371962 G A KIAA1161 Missense_Mutation p.A293V 0.11 tolerated(0.29) benign(0.112) TCGA-VQ-A91E-01 9 34372046 34372046 C T KIAA1161 Missense_Mutation p.R265H 0.12 deleterious(0.01) probably_damaging(0.98) TCGA-VQ-A91E-01 9 36091287 36091287 A G RECK Silent p.E344E 0.08 TCGA-VQ-A91E-01 9 6506249 6506249 G T UHRF2 3'UTR 0.33 TCGA-VQ-A91E-01 9 73151346 73151346 G T TRPM3 Missense_Mutation p.D1549E 0.20 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-VQ-A91E-01 9 79118474 79118474 C T GCNT1 Missense_Mutation p.R393C 0.13 deleterious(0) possibly_damaging(0.6) TCGA-VQ-A91E-01 9 79634802 79634802 C A FOXB2 Missense_Mutation p.P78T 0.12 deleterious(0) unknown(0) TCGA-VQ-A91E-01 9 86617035 86617035 A G RMI1 Silent p.V378V 0.23 TCGA-VQ-A91E-01 9 93606434 93606434 C A SYK Missense_Mutation p.P85H 0.19 deleterious(0) probably_damaging(1) TCGA-VQ-A91E-01 9 96863994 96863994 G A PTPDC1 Silent p.R718R 0.09 TCGA-VQ-A91E-01 9 97349726 97349726 C T FBP2 Missense_Mutation p.V66M 0.10 deleterious(0) possibly_damaging(0.729) TCGA-VQ-A91E-01 9 98268793 98268793 T - PTCH1 Frame_Shift_Del p.N97Tfs*20 0.14 TCGA-VQ-A91E-01 9 99797092 99797092 T - CTSV Frame_Shift_Del p.N274Tfs*40 0.16 TCGA-VQ-A91E-01 X 100608310 100608310 C A BTK Missense_Mutation p.G594W 0.10 deleterious(0) probably_damaging(1) TCGA-VQ-A91E-01 X 101969726 101969726 T C GPRASP2 5'UTR 0.13 TCGA-VQ-A91E-01 X 109416553 109416553 C T TMEM164 Silent p.A256A 0.27 TCGA-VQ-A91E-01 X 112024140 112024140 T C AMOT Missense_Mutation p.D816G 0.11 unknown(0) TCGA-VQ-A91E-01 X 117724261 117724261 A G DOCK11 Missense_Mutation p.D712G 0.16 deleterious(0) possibly_damaging(0.86) TCGA-VQ-A91E-01 X 118222066 118222066 C G KIAA1210 Missense_Mutation p.G1043R 0.14 deleterious(0) probably_damaging(0.974) TCGA-VQ-A91E-01 X 122532625 122532625 G T GRIA3 Nonsense_Mutation p.G351* 0.14 TCGA-VQ-A91E-01 X 125299423 125299423 G A DCAF12L2 Missense_Mutation p.T162M 0.11 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91E-01 X 12905143 12905143 T - TLR7 Frame_Shift_Del p.F507Lfs*16 0.15 TCGA-VQ-A91E-01 X 129149389 129149389 G A BCORL1 Missense_Mutation p.V881M 0.16 benign(0.07) TCGA-VQ-A91E-01 X 130409188 130409188 T G IGSF1 Missense_Mutation p.Q1091P 0.14 deleterious(0.01) benign(0.377) TCGA-VQ-A91E-01 X 135427194 135427194 C T GPR112 Silent p.A443A 0.10 TCGA-VQ-A91E-01 X 135738558 135738558 C T CD40LG Silent p.A130A 0.10 TCGA-VQ-A91E-01 X 140271153 140271153 G T LDOC1 Silent p.A18A 0.18 TCGA-VQ-A91E-01 X 142717033 142717033 G A SLITRK4 Missense_Mutation p.T631M 0.19 deleterious(0) probably_damaging(0.996) TCGA-VQ-A91E-01 X 147007099 147007099 T C FMR1 Missense_Mutation p.F49S 0.07 deleterious(0.03) possibly_damaging(0.645) TCGA-VQ-A91E-01 X 147744065 147744065 G T AFF2 Missense_Mutation p.G273W 0.12 deleterious(0) probably_damaging(0.913) TCGA-VQ-A91E-01 X 149905206 149905206 G A MTMR1 Missense_Mutation p.R399Q 0.15 deleterious(0.03) benign(0.018) TCGA-VQ-A91E-01 X 150349475 150349475 C A GPR50 Missense_Mutation p.P474T 0.14 deleterious_low_confidence(0.01) benign(0.05) TCGA-VQ-A91E-01 X 151092439 151092439 C T MAGEA4 Silent p.D101D 0.18 TCGA-VQ-A91E-01 X 151869651 151869651 C T MAGEA6 Missense_Mutation p.A114V 0.13 tolerated(0.2) benign(0.005) TCGA-VQ-A91E-01 X 152159151 152159151 C T PNMA5 Nonsense_Mutation p.W331* 0.17 TCGA-VQ-A91E-01 X 152612727 152612727 G T ZNF275 Missense_Mutation p.G195V 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-VQ-A91E-01 X 15800824 15800824 A G CA5B 3'UTR 0.16 TCGA-VQ-A91E-01 X 1585078 1585078 A G P2RY8 Missense_Mutation p.V125A 0.16 deleterious(0.03) probably_damaging(0.964) TCGA-VQ-A91E-01 X 19390888 19390888 G - MAP3K15 Frame_Shift_Del p.D997Efs*59 0.22 TCGA-VQ-A91E-01 X 21534701 21534701 A T CNKSR2 Silent p.S303S 0.17 TCGA-VQ-A91E-01 X 21581547 21581547 G A CNKSR2 Missense_Mutation p.V529M 0.16 tolerated(0.18) benign(0.007) TCGA-VQ-A91E-01 X 221770 221770 C A GTPBP6 Missense_Mutation p.G279C 0.29 deleterious(0) probably_damaging(0.99) TCGA-VQ-A91E-01 X 3241705 3241705 C T MXRA5 Missense_Mutation p.G674D 0.14 tolerated(0.52) benign(0.007) TCGA-VQ-A91E-01 X 32486805 32486805 T G DMD Missense_Mutation p.E991A 0.19 benign(0.068) TCGA-VQ-A91E-01 X 39913253 39913253 G - BCOR Frame_Shift_Del p.P1621Qfs*53 0.21 TCGA-VQ-A91E-01 X 41196706 41196706 A C DDX3X Missense_Mutation p.S31R 0.21 tolerated(0.2) benign(0.168) TCGA-VQ-A91E-01 X 44732755 44732756 - G KDM6A 5'Flank 0.17 TCGA-VQ-A91E-01 X 47107222 47107222 C T USP11 Missense_Mutation p.R929C 0.18 deleterious(0) probably_damaging(1) TCGA-VQ-A91E-01 X 48661384 48661384 T C HDAC6 Missense_Mutation p.L67P 0.20 deleterious(0) probably_damaging(0.993) TCGA-VQ-A91E-01 X 48780399 48780399 G A OTUD5 3'UTR 0.11 TCGA-VQ-A91E-01 X 48932435 48932435 A G WDR45 3'UTR 0.20 TCGA-VQ-A91E-01 X 50089667 50089667 G A CCNB3 Missense_Mutation p.R1224H 0.19 deleterious(0.02) benign(0.333) TCGA-VQ-A91E-01 X 51150051 51150051 C T CXorf67 Silent p.S61S 0.47 TCGA-VQ-A91E-01 X 53112422 53112422 C T TSPYL2 Nonsense_Mutation p.R248* 0.08 TCGA-VQ-A91E-01 X 53432458 53432458 G A SMC1A Silent p.R626R 0.16 TCGA-VQ-A91E-01 X 5821720 5821721 - G NLGN4X Frame_Shift_Ins p.A334Gfs*53 0.11 TCGA-VQ-A91E-01 X 70608152 70608152 A - TAF1 Frame_Shift_Del p.A854Pfs*14 0.14 TCGA-VQ-A91E-01 X 7171305 7171305 C T STS Missense_Mutation p.P27L 0.20 deleterious(0.01) probably_damaging(0.992) TCGA-VQ-A91E-01 X 73961235 73961235 G T KIAA2022 Missense_Mutation p.L1053M 0.13 deleterious(0) probably_damaging(1) TCGA-VQ-A91E-01 X 79942391 79942391 G A BRWD3 Nonsense_Mutation p.R1326* 0.24 TCGA-VQ-A91E-01 X 83372148 83372148 A T RPS6KA6 Missense_Mutation p.L290H 0.13 deleterious(0) probably_damaging(0.99) TCGA-VQ-A91E-01 X 89177679 89177679 T C TGIF2LX Missense_Mutation p.S199P 0.12 tolerated(0.26) benign(0.07) TCGA-VQ-A91E-01 X 9683005 9683005 C T TBL1X Nonsense_Mutation p.R557* 0.19 TCGA-VQ-A91K-01 10 100144810 100144810 G A PYROXD2 Silent p.C523C 0.38 TCGA-VQ-A91K-01 10 101293016 101293016 C T NKX2-3 Missense_Mutation p.A43V 0.55 tolerated(0.1) benign(0.001) TCGA-VQ-A91K-01 10 102120663 102120663 C A SCD Silent p.T351T 0.43 TCGA-VQ-A91K-01 10 102509528 102509529 - G PAX2 Frame_Shift_Ins p.V26Gfs*28 0.28 TCGA-VQ-A91K-01 10 102763789 102763789 C T LZTS2 Missense_Mutation p.P312S 0.36 deleterious(0.05) benign(0.13) TCGA-VQ-A91K-01 10 102766351 102766351 G A LZTS2 Missense_Mutation p.R479Q 0.40 deleterious(0) probably_damaging(0.992) TCGA-VQ-A91K-01 10 105376973 105376973 C T SH3PXD2A Missense_Mutation p.E273K 0.59 deleterious(0) possibly_damaging(0.82) TCGA-VQ-A91K-01 10 111893350 111893350 A - ADD3 Frame_Shift_Del p.K701Rfs*8 0.33 TCGA-VQ-A91K-01 10 112333494 112333494 T - SMC3 Frame_Shift_Del p.Y43Mfs*69 0.22 TCGA-VQ-A91K-01 10 115610195 115610195 C T DCLRE1A Silent p.S223S 0.30 TCGA-VQ-A91K-01 10 115917382 115917382 T - C10orf118 Frame_Shift_Del p.D231Tfs*3 0.21 TCGA-VQ-A91K-01 10 11990443 11990443 T A UPF2 Missense_Mutation p.E1033D 0.53 tolerated(0.62) benign(0.001) TCGA-VQ-A91K-01 10 121201537 121201537 T C GRK5 Silent p.L332L 0.20 TCGA-VQ-A91K-01 10 121658120 121658120 G A SEC23IP Silent p.K115K 0.37 TCGA-VQ-A91K-01 10 125426509 125426509 C T GPR26 Missense_Mutation p.L196F 0.33 tolerated(0.12) benign(0.072) TCGA-VQ-A91K-01 10 126370904 126370904 T A FAM53B Missense_Mutation p.I60F 0.28 tolerated(0.12) benign(0.354) TCGA-VQ-A91K-01 10 127730749 127730749 G A ADAM12 Intron 0.17 TCGA-VQ-A91K-01 10 128974056 128974056 G A FAM196A Missense_Mutation p.L202F 0.16 tolerated(0.23) benign(0.01) TCGA-VQ-A91K-01 10 129350890 129350890 G T NPS Missense_Mutation p.R86I 0.38 deleterious(0) probably_damaging(0.925) TCGA-VQ-A91K-01 10 133769242 133769242 G A PPP2R2D Silent p.T348T 0.39 TCGA-VQ-A91K-01 10 133946863 133946863 A G JAKMIP3 Silent p.R227R 0.38 TCGA-VQ-A91K-01 10 134942261 134942261 G A GPR123 Missense_Mutation p.R310H 0.39 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91K-01 10 135111566 135111566 T - TUBGCP2 Frame_Shift_Del p.N169Ifs*19 0.52 TCGA-VQ-A91K-01 10 15145454 15145454 G A RPP38 Silent p.T47T 0.40 TCGA-VQ-A91K-01 10 17107562 17107562 G A CUBN Silent p.S1028S 0.30 TCGA-VQ-A91K-01 10 17203548 17203548 C T TRDMT1 Splice_Site p.X108_splice 0.55 TCGA-VQ-A91K-01 10 17275845 17275845 C T VIM Missense_Mutation p.T266M 0.32 deleterious(0) probably_damaging(0.994) TCGA-VQ-A91K-01 10 21804778 21804778 G A SKIDA1 Silent p.N658N 0.34 TCGA-VQ-A91K-01 10 22048437 22048437 C - DNAJC1 Frame_Shift_Del p.V420Wfs*54 0.36 TCGA-VQ-A91K-01 10 22839627 22839627 G C PIP4K2A Missense_Mutation p.N251K 0.31 tolerated(0.82) benign(0.103) TCGA-VQ-A91K-01 10 24832378 24832378 G T KIAA1217 Missense_Mutation p.Q1393H 0.37 deleterious(0) probably_damaging(0.997) TCGA-VQ-A91K-01 10 24911670 24911670 T A ARHGAP21 Missense_Mutation p.T173S 0.10 tolerated_low_confidence(0.06) benign(0.036) TCGA-VQ-A91K-01 10 28030334 28030334 C T MKX Silent p.P96P 0.31 TCGA-VQ-A91K-01 10 30315188 30315188 C T KIAA1462 Missense_Mutation p.G1297R 0.30 tolerated(0.66) benign(0.201) TCGA-VQ-A91K-01 10 3190334 3190334 G A PITRM1 Intron 0.28 TCGA-VQ-A91K-01 10 3208571 3208571 C T PITRM1 Missense_Mutation p.V90M 0.37 deleterious(0) probably_damaging(0.918) TCGA-VQ-A91K-01 10 32197803 32197803 A - ARHGAP12 5'UTR 0.31 TCGA-VQ-A91K-01 10 33468951 33468951 A G NRP1 3'UTR 0.39 TCGA-VQ-A91K-01 10 34688311 34688311 G A PARD3 Silent p.N279N 0.29 TCGA-VQ-A91K-01 10 35464630 35464630 G A CREM Intron 0.42 TCGA-VQ-A91K-01 10 395298 395298 C T DIP2C Missense_Mutation p.D1028N 0.41 deleterious(0) probably_damaging(0.997) TCGA-VQ-A91K-01 10 42832724 42832724 T G RP11-313J2.1 RNA 0.50 TCGA-VQ-A91K-01 10 43882502 43882502 G A HNRNPF Silent p.G277G 0.15 TCGA-VQ-A91K-01 10 46111928 46111928 C T ZFAND4 Missense_Mutation p.E714K 0.35 deleterious(0.02) probably_damaging(0.994) TCGA-VQ-A91K-01 10 46965753 46965753 G A SYT15 Missense_Mutation p.R262C 0.26 tolerated(0.19) benign(0.006) TCGA-VQ-A91K-01 10 47087582 47087582 C T NPY4R Silent p.L267L 0.15 TCGA-VQ-A91K-01 10 50959883 50959883 G A OGDHL Missense_Mutation p.R247C 0.27 deleterious(0.01) probably_damaging(0.93) TCGA-VQ-A91K-01 10 55569293 55569293 T G PCDH15 Missense_Mutation p.K440T 0.06 tolerated(0.52) unknown(0) TCGA-VQ-A91K-01 10 55587198 55587200 GGC - PCDH15 In_Frame_Del p.P1443del 0.31 TCGA-VQ-A91K-01 10 61823946 61823946 T - ANK3 Frame_Shift_Del p.K4140Nfs*15 0.27 TCGA-VQ-A91K-01 10 63212509 63212509 C T TMEM26 Intron 0.54 TCGA-VQ-A91K-01 10 67680234 67680234 A G CTNNA3 Missense_Mutation p.W848R 0.39 deleterious(0) unknown(0) TCGA-VQ-A91K-01 10 70968506 70968506 A G SUPV3L1 Silent p.P692P 0.40 TCGA-VQ-A91K-01 10 72061131 72061131 G A LRRC20 Silent p.G178G 0.36 TCGA-VQ-A91K-01 10 72628124 72628124 G A SGPL1 Missense_Mutation p.S213N 0.26 deleterious(0) probably_damaging(0.967) TCGA-VQ-A91K-01 10 73501638 73501638 T C CDH23 Missense_Mutation p.L1607P 0.35 deleterious(0) probably_damaging(0.975) TCGA-VQ-A91K-01 10 7611671 7611671 G A ITIH5 Silent p.P703P 0.31 TCGA-VQ-A91K-01 10 81901861 81901861 C T PLAC9 Nonsense_Mutation p.R30* 0.17 TCGA-VQ-A91K-01 10 860976 860976 G T LARP4B Missense_Mutation p.P577H 0.29 deleterious(0.03) possibly_damaging(0.572) TCGA-VQ-A91K-01 10 88703628 88703628 C A MMRN2 Missense_Mutation p.G305C 0.36 deleterious(0.01) possibly_damaging(0.503) TCGA-VQ-A91K-01 10 88988317 88988317 C - NUTM2A Frame_Shift_Del p.L229Sfs*146 0.09 TCGA-VQ-A91K-01 10 890939 890939 T - LARP4B Frame_Shift_Del p.T163Hfs*47 0.32 TCGA-VQ-A91K-01 10 90682146 90682146 A - STAMBPL1 Frame_Shift_Del p.K405Rfs*21 0.35 TCGA-VQ-A91K-01 10 91163033 91163033 A - IFIT1 Frame_Shift_Del p.K336Sfs*9 0.28 TCGA-VQ-A91K-01 10 91177961 91177962 TA - IFIT5 Frame_Shift_Del p.M336Vfs*14 0.28 TCGA-VQ-A91K-01 10 93252229 93252229 C T HECTD2 Missense_Mutation p.H474Y 0.23 deleterious(0.03) possibly_damaging(0.612) TCGA-VQ-A91K-01 10 94822648 94822648 C T CYP26C1 Missense_Mutation p.R201W 0.38 deleterious(0) possibly_damaging(0.79) TCGA-VQ-A91K-01 10 95353597 95353597 C A RBP4 Missense_Mutation p.R184M 0.43 deleterious(0) possibly_damaging(0.898) TCGA-VQ-A91K-01 10 95791685 95791685 G T PLCE1 Missense_Mutation p.K294N 0.10 deleterious_low_confidence(0) possibly_damaging(0.511) TCGA-VQ-A91K-01 10 96076348 96076348 T - PLCE1 Frame_Shift_Del p.L2061* 0.20 TCGA-VQ-A91K-01 10 97096514 97096514 C - SORBS1 Frame_Shift_Del p.A1135Qfs*17 0.36 TCGA-VQ-A91K-01 10 97099026 97099026 G A SORBS1 Missense_Mutation p.P910L 0.32 tolerated(0.15) possibly_damaging(0.685) TCGA-VQ-A91K-01 10 97966803 97966803 C T BLNK Missense_Mutation p.V261I 0.33 tolerated(0.45) benign(0.003) TCGA-VQ-A91K-01 10 98807455 98807455 C A SLIT1 Silent p.T542T 0.39 TCGA-VQ-A91K-01 10 99968533 99968533 C A R3HCC1L Missense_Mutation p.P221H 0.33 deleterious(0) probably_damaging(0.986) TCGA-VQ-A91K-01 11 100999020 100999020 G A PGR Missense_Mutation p.A261V 0.33 deleterious_low_confidence(0.05) probably_damaging(0.983) TCGA-VQ-A91K-01 11 100999021 100999021 C G PGR Missense_Mutation p.A261P 0.33 tolerated_low_confidence(0.06) probably_damaging(0.995) TCGA-VQ-A91K-01 11 1017853 1017853 T A MUC6 Missense_Mutation p.T1650S 0.09 unknown(0) TCGA-VQ-A91K-01 11 101981861 101981863 CTT - YAP1 In_Frame_Del p.F96del 0.30 TCGA-VQ-A91K-01 11 1025310 1025310 C T MUC6 Missense_Mutation p.V953M 0.29 unknown(0) TCGA-VQ-A91K-01 11 102713563 102713563 T - MMP3 Frame_Shift_Del p.I64Sfs*12 0.31 TCGA-VQ-A91K-01 11 102826135 102826135 C T MMP13 Missense_Mutation p.E70K 0.33 tolerated(0.12) possibly_damaging(0.458) TCGA-VQ-A91K-01 11 103039565 103039565 A G DYNC2H1 Missense_Mutation p.Q1615R 0.47 benign(0.009) TCGA-VQ-A91K-01 11 111896977 111896977 A - DLAT Frame_Shift_Del p.E115Rfs*10 0.25 TCGA-VQ-A91K-01 11 111953289 111953289 A - C11orf57 Frame_Shift_Del p.K161Sfs*20 0.45 TCGA-VQ-A91K-01 11 113673933 113673933 G A USP28 Missense_Mutation p.R937C 0.41 tolerated(0.18) benign(0.001) TCGA-VQ-A91K-01 11 1159019 1159019 C T MUC5AC Silent p.N399N 0.36 TCGA-VQ-A91K-01 11 116633860 116633860 C A BUD13 Missense_Mutation p.D149Y 0.31 deleterious(0) probably_damaging(0.954) TCGA-VQ-A91K-01 11 116661095 116661095 G A APOA5 Nonsense_Mutation p.R284* 0.29 TCGA-VQ-A91K-01 11 117152757 117152757 C A RNF214 Missense_Mutation p.Q495K 0.35 tolerated(0.6) benign(0.149) TCGA-VQ-A91K-01 11 117329546 117329546 G T DSCAML1 Missense_Mutation p.S1224R 0.37 deleterious(0.02) possibly_damaging(0.723) TCGA-VQ-A91K-01 11 118047235 118047235 A - SCN2B 5'UTR 0.67 TCGA-VQ-A91K-01 11 118773106 118773106 G - BCL9L Frame_Shift_Del p.P449Lfs*14 0.43 TCGA-VQ-A91K-01 11 118925367 118925367 C T HYOU1 Missense_Mutation p.V173M 0.38 deleterious(0) probably_damaging(0.992) TCGA-VQ-A91K-01 11 119056947 119056947 C A PDZD3 Intron 0.30 TCGA-VQ-A91K-01 11 120984388 120984388 G - TECTA Frame_Shift_Del p.G251Efs*27 0.28 TCGA-VQ-A91K-01 11 121000545 121000545 G A TECTA Missense_Mutation p.A856T 0.32 tolerated(0.55) benign(0.426) TCGA-VQ-A91K-01 11 121403245 121403245 G A SORL1 Missense_Mutation p.E557K 0.26 deleterious(0.05) benign(0.066) TCGA-VQ-A91K-01 11 12241940 12241940 G A MICAL2 Missense_Mutation p.A381T 0.08 deleterious(0.02) probably_damaging(0.998) TCGA-VQ-A91K-01 11 123847614 123847615 - C OR10S1 Frame_Shift_Ins p.V262Gfs*19 0.28 TCGA-VQ-A91K-01 11 123908888 123908888 A - OR10G7 Frame_Shift_Del p.F274Sfs*5 0.29 TCGA-VQ-A91K-01 11 123909279 123909279 C T OR10G7 Missense_Mutation p.A144T 0.35 tolerated(0.14) benign(0.277) TCGA-VQ-A91K-01 11 125448081 125448081 G A EI24 Silent p.T123T 0.37 TCGA-VQ-A91K-01 11 125873845 125873845 C T CDON Missense_Mutation p.A660T 0.25 tolerated(0.07) benign(0.127) TCGA-VQ-A91K-01 11 1264230 1264230 C T MUC5B Silent p.S2040S 0.14 TCGA-VQ-A91K-01 11 129999033 129999033 A G APLP2 Missense_Mutation p.M463V 0.29 deleterious(0.05) benign(0.05) TCGA-VQ-A91K-01 11 130058550 130058550 G A ST14 Missense_Mutation p.A123T 0.36 tolerated(0.67) benign(0.053) TCGA-VQ-A91K-01 11 133791249 133791249 G A IGSF9B Nonsense_Mutation p.R791* 0.47 TCGA-VQ-A91K-01 11 134253703 134253703 C T B3GAT1 Silent p.P164P 0.33 TCGA-VQ-A91K-01 11 17143783 17143783 T C PIK3C2A Missense_Mutation p.D870G 0.38 tolerated(0.09) possibly_damaging(0.528) TCGA-VQ-A91K-01 11 17190658 17190668 TTCCTTGTGGA - PIK3C2A Frame_Shift_Del p.H207Qfs*12 0.25 TCGA-VQ-A91K-01 11 17794004 17794004 A - KCNC1 Frame_Shift_Del p.K457Rfs*20 0.30 TCGA-VQ-A91K-01 11 18424480 18424480 G A LDHA Missense_Mutation p.R200H 0.37 tolerated(0.15) benign(0.228) TCGA-VQ-A91K-01 11 18765674 18765674 G A PTPN5 Missense_Mutation p.P57L 0.34 tolerated_low_confidence(0.11) probably_damaging(0.999) TCGA-VQ-A91K-01 11 19077369 19077369 A - MRGPRX2 Frame_Shift_Del p.L194Yfs*25 0.21 TCGA-VQ-A91K-01 11 20178735 20178735 C T DBX1 Missense_Mutation p.A174T 0.36 tolerated(0.09) possibly_damaging(0.491) TCGA-VQ-A91K-01 11 26620466 26620466 C T ANO3 Missense_Mutation p.T531M 0.34 deleterious(0) possibly_damaging(0.844) TCGA-VQ-A91K-01 11 27695754 27695754 C A BDNF Missense_Mutation p.Q26H 0.19 deleterious_low_confidence(0) benign(0.387) TCGA-VQ-A91K-01 11 32616514 32616514 T G EIF3M Silent p.L224L 0.28 TCGA-VQ-A91K-01 11 33117910 33117910 T - CSTF3 Frame_Shift_Del p.K439Nfs*33 0.29 TCGA-VQ-A91K-01 11 33565028 33565028 C A KIAA1549L Missense_Mutation p.P343Q 0.16 deleterious_low_confidence(0) benign(0.017) TCGA-VQ-A91K-01 11 33589690 33589690 C T KIAA1549L Missense_Mutation p.R1086C 0.44 deleterious(0) probably_damaging(1) TCGA-VQ-A91K-01 11 33628348 33628348 T C KIAA1549L Missense_Mutation p.S1384P 0.45 tolerated(0.09) possibly_damaging(0.875) TCGA-VQ-A91K-01 11 3685382 3685382 T C ART1 Missense_Mutation p.V316A 0.38 tolerated(0.18) benign(0.023) TCGA-VQ-A91K-01 11 3704465 3704465 C T NUP98 Missense_Mutation p.R1628H 0.44 tolerated(0.12) benign(0.004) TCGA-VQ-A91K-01 11 3793087 3793087 A G NUP98 Silent p.T225T 0.36 TCGA-VQ-A91K-01 11 4104186 4104186 T C STIM1 Silent p.D404D 0.35 TCGA-VQ-A91K-01 11 43603025 43603025 C T MIR129-2 RNA 0.36 TCGA-VQ-A91K-01 11 45949550 45949550 C T GYLTL1B Missense_Mutation p.R562C 0.33 deleterious(0) probably_damaging(0.982) TCGA-VQ-A91K-01 11 46897415 46897415 G T LRP4 Silent p.P1213P 0.26 TCGA-VQ-A91K-01 11 4703501 4703501 A G OR51E2 Silent p.A147A 0.33 TCGA-VQ-A91K-01 11 47283244 47283244 C T NR1H3 Silent p.D285D 0.43 TCGA-VQ-A91K-01 11 47372949 47372949 C T MYBPC3 Missense_Mutation p.G45R 0.33 tolerated_low_confidence(0.07) benign(0.009) TCGA-VQ-A91K-01 11 4824705 4824705 G A OR52R1 Silent p.I302I 0.37 TCGA-VQ-A91K-01 11 4869841 4869841 C T OR51S1 Missense_Mutation p.A200T 0.36 tolerated(1) benign(0.107) TCGA-VQ-A91K-01 11 5080586 5080586 A T OR52E2 Missense_Mutation p.L91H 0.39 tolerated(0.07) benign(0.239) TCGA-VQ-A91K-01 11 55110739 55110740 - A OR4A16 Frame_Shift_Ins p.T24Nfs*63 0.29 TCGA-VQ-A91K-01 11 55339620 55339620 A G OR4C16 Missense_Mutation p.N6S 0.33 tolerated(0.41) benign(0.082) TCGA-VQ-A91K-01 11 55873410 55873410 A - OR8H2 Frame_Shift_Del p.N299Mfs*? 0.30 TCGA-VQ-A91K-01 11 57427366 57427366 C T CLP1 Missense_Mutation p.R140C 0.30 deleterious(0) probably_damaging(0.998) TCGA-VQ-A91K-01 11 57572167 57572167 G A CTNND1 Missense_Mutation p.R546Q 0.46 tolerated(0.09) probably_damaging(0.957) TCGA-VQ-A91K-01 11 57575764 57575764 G A CTNND1 Silent p.T697T 0.31 TCGA-VQ-A91K-01 11 59210713 59210713 A G OR5A1 Silent p.P24P 0.30 TCGA-VQ-A91K-01 11 60704787 60704787 G A SLC15A3 Silent p.A550A 0.34 TCGA-VQ-A91K-01 11 60886424 60886424 G A CD5 Silent p.P146P 0.24 TCGA-VQ-A91K-01 11 61187475 61187475 C T CPSF7 Missense_Mutation p.V200M 0.39 deleterious(0.01) probably_damaging(0.991) TCGA-VQ-A91K-01 11 61583890 61583890 G T FADS1 Intron 0.38 TCGA-VQ-A91K-01 11 62415177 62415177 C - INTS5 Frame_Shift_Del p.G792Afs*13 0.17 TCGA-VQ-A91K-01 11 62439556 62439556 C T C11orf83 Silent p.G84G 0.50 TCGA-VQ-A91K-01 11 63177405 63177405 A T SLC22A9 3'UTR 0.25 TCGA-VQ-A91K-01 11 63662717 63662718 - C MARK2 Frame_Shift_Ins p.H49Pfs*15 0.26 TCGA-VQ-A91K-01 11 63978313 63978313 C T FERMT3 Missense_Mutation p.L131F 0.41 tolerated(0.11) benign(0.289) TCGA-VQ-A91K-01 11 64004663 64004663 A - VEGFB Frame_Shift_Del p.K129Rfs*5 0.28 TCGA-VQ-A91K-01 11 64128952 64128952 C A RPS6KA4 Silent p.T194T 0.27 TCGA-VQ-A91K-01 11 6477899 6477899 G A TRIM3 Missense_Mutation p.R353W 0.41 deleterious(0) possibly_damaging(0.713) TCGA-VQ-A91K-01 11 65266542 65266542 C A MALAT1 RNA 0.43 TCGA-VQ-A91K-01 11 65300222 65300222 C T SCYL1 Silent p.H392H 0.43 TCGA-VQ-A91K-01 11 65321835 65321835 G A LTBP3 Silent p.P116P 0.42 TCGA-VQ-A91K-01 11 65649901 65649901 A - CTSW Frame_Shift_Del p.N149Tfs*14 0.27 TCGA-VQ-A91K-01 11 66190163 66190163 G A NPAS4 Missense_Mutation p.R150H 0.39 tolerated(0.08) benign(0.21) TCGA-VQ-A91K-01 11 66272131 66272131 G T DPP3 Missense_Mutation p.G643W 0.34 tolerated(0.17) possibly_damaging(0.454) TCGA-VQ-A91K-01 11 66392640 66392640 C A RBM14 Silent p.A431A 0.34 TCGA-VQ-A91K-01 11 6653281 6653281 G A DCHS1 Silent p.F1154F 0.53 TCGA-VQ-A91K-01 11 6653762 6653762 C T DCHS1 Missense_Mutation p.R994H 0.56 tolerated(0.4) benign(0.001) TCGA-VQ-A91K-01 11 67132719 67132719 T C CLCF1 Missense_Mutation p.K189R 0.17 tolerated(1) probably_damaging(0.994) TCGA-VQ-A91K-01 11 674758 674758 C T DEAF1 Silent p.A427A 0.37 TCGA-VQ-A91K-01 11 68851437 68851437 G A TPCN2 Missense_Mutation p.V572I 0.14 tolerated(0.63) benign(0.01) TCGA-VQ-A91K-01 11 70224246 70224246 G T PPFIA1 Silent p.R1165R 0.41 TCGA-VQ-A91K-01 11 70333046 70333046 C T SHANK2 Missense_Mutation p.A1119T 0.36 tolerated(0.88) benign(0) TCGA-VQ-A91K-01 11 7111521 7111521 C T RBMXL2 Silent p.S390S 0.56 TCGA-VQ-A91K-01 11 71276893 71276893 G T KRTAP5-10 Missense_Mutation p.C87F 0.43 unknown(0) TCGA-VQ-A91K-01 11 71507075 71507075 G A FAM86C1 Missense_Mutation p.A92T 0.08 tolerated_low_confidence(0.1) benign(0.169) TCGA-VQ-A91K-01 11 71850038 71850038 C T FOLR3 Missense_Mutation p.R110W 0.24 tolerated(0.07) benign(0.187) TCGA-VQ-A91K-01 11 73555926 73555926 T C MRPL48 Silent p.N92N 0.18 TCGA-VQ-A91K-01 11 75694431 75694432 AA - UVRAG Frame_Shift_Del p.S237* 0.43 TCGA-VQ-A91K-01 11 76507526 76507526 C T TSKU Missense_Mutation p.T289I 0.33 deleterious(0) probably_damaging(0.936) TCGA-VQ-A91K-01 11 77885544 77885544 C T KCTD21 Silent p.A19A 0.35 TCGA-VQ-A91K-01 11 77934463 77934463 C T GAB2 Missense_Mutation p.R521Q 0.33 deleterious(0.04) benign(0.073) TCGA-VQ-A91K-01 11 840429 840429 C A POLR2L Silent p.L49L 0.28 TCGA-VQ-A91K-01 11 86209118 86209118 C A ME3 Missense_Mutation p.G198C 0.32 deleterious(0.02) probably_damaging(0.986) TCGA-VQ-A91K-01 11 9051469 9051469 G A SCUBE2 Missense_Mutation p.T765I 0.35 deleterious(0) probably_damaging(0.972) TCGA-VQ-A91K-01 11 92088048 92088049 - T FAT3 Frame_Shift_Ins p.L926Ffs*3 0.31 TCGA-VQ-A91K-01 11 92577374 92577374 G C FAT3 Missense_Mutation p.G3614A 0.27 probably_damaging(0.999) TCGA-VQ-A91K-01 11 93819188 93819188 G T HEPHL1 Missense_Mutation p.C638F 0.34 deleterious(0) probably_damaging(0.993) TCGA-VQ-A91K-01 11 94189473 94189473 T - MRE11A Frame_Shift_Del p.N511Ifs*13 0.29 TCGA-VQ-A91K-01 11 9430129 9430129 G A IPO7 Missense_Mutation p.R88H 0.38 deleterious(0) probably_damaging(0.971) TCGA-VQ-A91K-01 11 94533239 94533239 T C AMOTL1 Missense_Mutation p.S295P 0.32 tolerated(0.95) benign(0.001) TCGA-VQ-A91K-01 11 94861805 94861805 C T ENDOD1 Nonsense_Mutation p.Q189* 0.46 TCGA-VQ-A91K-01 12 100603986 100603986 G A ACTR6 Missense_Mutation p.R172Q 0.34 deleterious(0) probably_damaging(0.968) TCGA-VQ-A91K-01 12 102494820 102494820 T - NUP37 Frame_Shift_Del p.N115Mfs*6 0.25 TCGA-VQ-A91K-01 12 102869532 102869532 G T IGF1 Missense_Mutation p.L37M 0.38 deleterious(0.02) possibly_damaging(0.905) TCGA-VQ-A91K-01 12 103696329 103696329 C T C12orf42 Missense_Mutation p.A214T 0.39 tolerated(0.48) possibly_damaging(0.877) TCGA-VQ-A91K-01 12 104698744 104698744 T - EID3 3'UTR 0.41 TCGA-VQ-A91K-01 12 106466569 106466569 G A NUAK1 Missense_Mutation p.T211M 0.46 deleterious(0) probably_damaging(1) TCGA-VQ-A91K-01 12 106830866 106830866 G A POLR3B Missense_Mutation p.A605T 0.38 tolerated(0.23) benign(0.002) TCGA-VQ-A91K-01 12 107372132 107372132 A G MTERFD3 Silent p.L121L 0.12 TCGA-VQ-A91K-01 12 107713322 107713322 G A BTBD11 Missense_Mutation p.G202D 0.50 deleterious(0) unknown(0) TCGA-VQ-A91K-01 12 10782101 10782101 G T STYK1 Silent p.T208T 0.36 TCGA-VQ-A91K-01 12 107937916 107937916 G T BTBD11 Missense_Mutation p.R497M 0.44 deleterious(0) probably_damaging(0.979) TCGA-VQ-A91K-01 12 108917254 108917254 T A SART3 Nonsense_Mutation p.K958* 0.35 TCGA-VQ-A91K-01 12 110290427 110290427 G A GLTP Missense_Mutation p.T188M 0.37 deleterious(0.01) benign(0.272) TCGA-VQ-A91K-01 12 110461861 110461861 G A ANKRD13A Missense_Mutation p.G249R 0.30 deleterious(0) probably_damaging(0.967) TCGA-VQ-A91K-01 12 110467320 110467321 CT - ANKRD13A Frame_Shift_Del p.L374Gfs*9 0.32 TCGA-VQ-A91K-01 12 110891661 110891661 T C GPN3 Missense_Mutation p.M266V 0.26 deleterious(0.03) benign(0.022) TCGA-VQ-A91K-01 12 113446913 113446913 C T OAS2 Silent p.A639A 0.32 TCGA-VQ-A91K-01 12 114397197 114397197 T C RBM19 Missense_Mutation p.T131A 0.17 tolerated(0.35) benign(0.001) TCGA-VQ-A91K-01 12 118693338 118693338 G A TAOK3 Missense_Mutation p.A12V 0.31 deleterious(0) benign(0.003) TCGA-VQ-A91K-01 12 120611873 120611873 A G GCN1L1 Splice_Site p.X398_splice 0.42 TCGA-VQ-A91K-01 12 120763743 120763743 C T PLA2G1B Missense_Mutation p.D39N 0.30 tolerated(0.36) benign(0.001) TCGA-VQ-A91K-01 12 121880228 121880228 G - KDM2B Frame_Shift_Del p.R1006Gfs*37 0.47 TCGA-VQ-A91K-01 12 121891048 121891048 G A KDM2B Nonsense_Mutation p.R612* 0.31 TCGA-VQ-A91K-01 12 12303924 12303924 A T LRP6 Missense_Mutation p.M947K 0.35 deleterious(0) probably_damaging(0.963) TCGA-VQ-A91K-01 12 123444830 123444831 - G ABCB9 5'UTR 0.31 TCGA-VQ-A91K-01 12 123805364 123805365 - T SBNO1 Frame_Shift_Ins p.K792Efs*24 0.23 TCGA-VQ-A91K-01 12 124950804 124950804 G A NCOR2 Missense_Mutation p.P207L 0.40 unknown(0) TCGA-VQ-A91K-01 12 125834826 125834826 G A TMEM132B Missense_Mutation p.G294E 0.38 deleterious(0.01) probably_damaging(1) TCGA-VQ-A91K-01 12 12672902 12672902 A T DUSP16 Silent p.V87V 0.46 TCGA-VQ-A91K-01 12 12870749 12870749 G A CDKN1B 5'UTR 0.39 TCGA-VQ-A91K-01 12 133218398 133218398 G T POLE Missense_Mutation p.T1738N 0.25 deleterious(0) possibly_damaging(0.905) TCGA-VQ-A91K-01 12 133218840 133218840 G T POLE Missense_Mutation p.A1699D 0.34 tolerated(0.27) benign(0.02) TCGA-VQ-A91K-01 12 133245023 133245024 - G POLE Frame_Shift_Ins p.F699Vfs*11 0.29 TCGA-VQ-A91K-01 12 14577801 14577802 - A ATF7IP Frame_Shift_Ins p.N320Kfs*4 0.57 TCGA-VQ-A91K-01 12 14656839 14656839 C T PLBD1 Missense_Mutation p.G510D 0.33 deleterious(0) probably_damaging(0.996) TCGA-VQ-A91K-01 12 1943779 1943779 C T LRTM2 Silent p.Y335Y 0.31 TCGA-VQ-A91K-01 12 21757648 21757648 T C GYS2 5'UTR 0.46 TCGA-VQ-A91K-01 12 23689398 23689398 G T SOX5 Nonsense_Mutation p.Y659* 0.24 TCGA-VQ-A91K-01 12 23728657 23728657 C T SOX5 Missense_Mutation p.G427D 0.38 tolerated(0.21) benign(0.069) TCGA-VQ-A91K-01 12 26818918 26818918 T C ITPR2 Silent p.E492E 0.15 TCGA-VQ-A91K-01 12 29460843 29460844 - TTC FAR2 Intron 0.38 TCGA-VQ-A91K-01 12 302441 302441 A G SLC6A12 Splice_Site p.X510_splice 0.31 TCGA-VQ-A91K-01 12 31854900 31854900 G A AMN1 Silent p.C71C 0.27 TCGA-VQ-A91K-01 12 32890055 32890055 G T DNM1L Missense_Mutation p.R519M 0.29 deleterious(0.03) possibly_damaging(0.497) TCGA-VQ-A91K-01 12 39751221 39751221 C T KIF21A Missense_Mutation p.E412K 0.31 deleterious(0) probably_damaging(0.995) TCGA-VQ-A91K-01 12 41374820 41374820 T C CNTN1 Silent p.T638T 0.33 TCGA-VQ-A91K-01 12 42481629 42481629 T - GXYLT1 Frame_Shift_Del p.S428Vfs*2 0.25 TCGA-VQ-A91K-01 12 42707703 42707703 T - ZCRB1 Frame_Shift_Del p.K140Rfs*13 0.40 TCGA-VQ-A91K-01 12 46592521 46592521 C T SLC38A1 Missense_Mutation p.V337M 0.38 deleterious(0.04) possibly_damaging(0.564) TCGA-VQ-A91K-01 12 50041982 50041982 C T FMNL3 Silent p.T890T 0.33 TCGA-VQ-A91K-01 12 50453703 50453703 G - ASIC1 Frame_Shift_Del p.E177Rfs*31 0.27 TCGA-VQ-A91K-01 12 52943949 52943949 T C KRT71 Missense_Mutation p.K174E 0.25 deleterious(0.02) possibly_damaging(0.734) TCGA-VQ-A91K-01 12 53088460 53088460 G A KRT77 Silent p.L344L 0.55 TCGA-VQ-A91K-01 12 53606886 53606886 C T RARG Missense_Mutation p.R387Q 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A91K-01 12 53818998 53818998 C G AMHR2 Silent p.L158L 0.40 TCGA-VQ-A91K-01 12 53854864 53854865 TA - PCBP2 Frame_Shift_Del p.I148Cfs*9 0.22 TCGA-VQ-A91K-01 12 53880898 53880898 C - MAP3K12 Frame_Shift_Del p.G93Efs*42 0.20 TCGA-VQ-A91K-01 12 54069851 54069853 GAG - ATP5G2 In_Frame_Del p.L42del 0.44 TCGA-VQ-A91K-01 12 55420659 55420659 G T NEUROD4 Missense_Mutation p.G146C 0.35 deleterious(0) probably_damaging(1) TCGA-VQ-A91K-01 12 55759706 55759706 G T OR6C75 Missense_Mutation p.G271V 0.36 deleterious_low_confidence(0.03) probably_damaging(1) TCGA-VQ-A91K-01 12 55887071 55887071 A - OR6C68 Frame_Shift_Del p.I306Lfs*5 0.25 TCGA-VQ-A91K-01 12 56031143 56031143 G A OR10P1 Silent p.T156T 0.51 TCGA-VQ-A91K-01 12 56334148 56334148 C T DGKA Silent p.D283D 0.33 TCGA-VQ-A91K-01 12 56863175 56863175 G A SPRYD4 Silent p.G146G 0.37 TCGA-VQ-A91K-01 12 57567080 57567080 A G LRP1 Missense_Mutation p.E1098G 0.29 benign(0.15) TCGA-VQ-A91K-01 12 58121121 58121121 C T AGAP2-AS1 Missense_Mutation p.R116C 0.35 benign(0.001) TCGA-VQ-A91K-01 12 6664861 6664861 C T IFFO1 Missense_Mutation p.G112D 0.35 tolerated_low_confidence(0.4) probably_damaging(0.944) TCGA-VQ-A91K-01 12 6779975 6779975 C T ZNF384 Missense_Mutation p.C375Y 0.27 deleterious(0) probably_damaging(0.998) TCGA-VQ-A91K-01 12 7050639 7050639 C T ATN1 Missense_Mutation p.A1154V 0.19 probably_damaging(0.995) TCGA-VQ-A91K-01 12 7242010 7242010 G - C1R Frame_Shift_Del p.P215Lfs*100 0.26 TCGA-VQ-A91K-01 12 7556172 7556172 C T CD163L1 Missense_Mutation p.R456Q 0.35 tolerated(0.5) benign(0.007) TCGA-VQ-A91K-01 12 75678738 75678738 T C CAPS2 Intron 0.34 TCGA-VQ-A91K-01 12 78444887 78444887 A G NAV3 Missense_Mutation p.I826V 0.37 tolerated(1) possibly_damaging(0.596) TCGA-VQ-A91K-01 12 80764364 80764364 G A OTOGL Nonsense_Mutation p.W2201* 0.24 TCGA-VQ-A91K-01 12 88374069 88374069 G A C12orf50 3'UTR 0.26 TCGA-VQ-A91K-01 12 91449297 91449297 G T KERA Silent p.L254L 0.32 TCGA-VQ-A91K-01 12 93196419 93196419 T - EEA1 Frame_Shift_Del p.I811Sfs*2 0.33 TCGA-VQ-A91K-01 12 9345296 9345296 A G PZP Missense_Mutation p.W432R 0.38 deleterious(0.01) possibly_damaging(0.459) TCGA-VQ-A91K-01 12 98849069 98849069 C T SLC9A7P1 RNA 0.39 TCGA-VQ-A91K-01 12 98928114 98928114 A G TMPO Silent p.K693K 0.34 TCGA-VQ-A91K-01 12 99038451 99038451 G A IKBIP Missense_Mutation p.S10L 0.43 deleterious(0.04) benign(0.057) TCGA-VQ-A91K-01 13 101728245 101728245 A C NALCN Missense_Mutation p.F1311L 0.33 deleterious(0) probably_damaging(0.979) TCGA-VQ-A91K-01 13 103508419 103508419 A - BIVM-ERCC5 Frame_Shift_Del p.E590Nfs*6 0.19 TCGA-VQ-A91K-01 13 108861924 108861924 C T LIG4 Missense_Mutation p.V565I 0.47 tolerated(0.32) benign(0.13) TCGA-VQ-A91K-01 13 109672171 109672171 C T MYO16 Missense_Mutation p.A881V 0.24 tolerated(0.22) benign(0.166) TCGA-VQ-A91K-01 13 113773229 113773229 G A F7 Silent p.V436V 0.37 TCGA-VQ-A91K-01 13 20717239 20717239 G A GJA3 Silent p.N63N 0.18 TCGA-VQ-A91K-01 13 21436893 21436893 G A XPO4 Nonsense_Mutation p.R94* 0.39 TCGA-VQ-A91K-01 13 23906662 23906662 T A SACS Missense_Mutation p.R3785W 0.34 benign(0.001) TCGA-VQ-A91K-01 13 23912413 23912413 C A SACS Nonsense_Mutation p.G1868* 0.40 TCGA-VQ-A91K-01 13 25670601 25670601 C T PABPC3 Missense_Mutation p.R89C 0.24 deleterious(0) probably_damaging(1) TCGA-VQ-A91K-01 13 27250696 27250696 G A WASF3 Missense_Mutation p.R184H 0.39 tolerated(0.12) benign(0.004) TCGA-VQ-A91K-01 13 31715327 31715327 G A HSPH1 Silent p.L596L 0.30 TCGA-VQ-A91K-01 13 31729690 31729690 G A HSPH1 Silent p.Y89Y 0.37 TCGA-VQ-A91K-01 13 32709219 32709219 C T FRY Intron 0.34 TCGA-VQ-A91K-01 13 33638205 33638206 - T KL Frame_Shift_Ins p.H977Sfs*83 0.32 TCGA-VQ-A91K-01 13 36125103 36125104 - A NBEA Frame_Shift_Ins p.V2250Sfs*4 0.40 TCGA-VQ-A91K-01 13 36903614 36903614 A T SPG20 Missense_Mutation p.I350N 0.34 tolerated(0.09) benign(0.306) TCGA-VQ-A91K-01 13 37011973 37011973 C T CCNA1 Missense_Mutation p.L169F 0.28 tolerated(0.19) benign(0.024) TCGA-VQ-A91K-01 13 37439827 37439827 G A SMAD9 Nonsense_Mutation p.R284* 0.24 TCGA-VQ-A91K-01 13 38172850 38172850 A - POSTN Frame_Shift_Del p.L5Yfs*15 0.21 TCGA-VQ-A91K-01 13 39358842 39358842 G C FREM2 Missense_Mutation p.E1972D 0.39 deleterious(0) probably_damaging(0.984) TCGA-VQ-A91K-01 13 41515348 41515348 T A ELF1 Missense_Mutation p.N322I 0.10 deleterious(0.02) benign(0.041) TCGA-VQ-A91K-01 13 41943362 41943362 A T NAA16 Missense_Mutation p.E630D 0.29 tolerated(1) benign(0.001) TCGA-VQ-A91K-01 13 42245143 42245143 C T VWA8 Missense_Mutation p.R1517H 0.32 tolerated(0.36) benign(0.001) TCGA-VQ-A91K-01 13 42486215 42486215 G A VWA8 Missense_Mutation p.P111S 0.32 tolerated(0.55) possibly_damaging(0.574) TCGA-VQ-A91K-01 13 42729501 42729501 G A DGKH Silent p.L153L 0.35 TCGA-VQ-A91K-01 13 42783190 42783190 G A DGKH Silent p.Q899Q 0.37 TCGA-VQ-A91K-01 13 49794620 49794620 C T MLNR Silent p.F49F 0.33 TCGA-VQ-A91K-01 13 52524492 52524492 C T ATP7B Missense_Mutation p.V831I 0.41 tolerated(1) benign(0.012) TCGA-VQ-A91K-01 13 52952145 52952145 C A THSD1 Missense_Mutation p.A654S 0.34 tolerated(0.3) benign(0.253) TCGA-VQ-A91K-01 13 53422348 53422348 C T PCDH8 Missense_Mutation p.R75Q 0.38 tolerated(0.2) benign(0.049) TCGA-VQ-A91K-01 13 66878814 66878814 A C PCDH9 Silent p.T1229T 0.40 TCGA-VQ-A91K-01 13 73649972 73649972 G A KLF5 Missense_Mutation p.S441N 0.29 tolerated(0.08) probably_damaging(0.94) TCGA-VQ-A91K-01 13 76382045 76382045 T - LMO7 Frame_Shift_Del p.E312Nfs*33 0.24 TCGA-VQ-A91K-01 13 77844451 77844451 C T MYCBP2 Missense_Mutation p.G352R 0.56 probably_damaging(0.987) TCGA-VQ-A91K-01 13 95121040 95121040 A - DCT Frame_Shift_Del p.F185Lfs*14 0.31 TCGA-VQ-A91K-01 13 95899927 95899927 C T ABCC4 Missense_Mutation p.R52H 0.44 deleterious(0.03) possibly_damaging(0.587) TCGA-VQ-A91K-01 13 97928346 97928346 C T MBNL2 5'UTR 0.50 TCGA-VQ-A91K-01 13 98828750 98828750 G A RNF113B Silent p.S247S 0.34 TCGA-VQ-A91K-01 14 100847827 100847827 C T WDR25 Missense_Mutation p.T189M 0.43 tolerated(0.08) benign(0.032) TCGA-VQ-A91K-01 14 101348343 101348343 C T RTL1 Missense_Mutation p.R928Q 0.18 tolerated(0.16) possibly_damaging(0.849) TCGA-VQ-A91K-01 14 101512319 101512319 C A MIR381 RNA 0.34 TCGA-VQ-A91K-01 14 102797967 102797967 G A ZNF839 Silent p.Q400Q 0.17 TCGA-VQ-A91K-01 14 104129065 104129065 G A KLC1 Missense_Mutation p.A200T 0.20 tolerated(0.06) benign(0.052) TCGA-VQ-A91K-01 14 104378819 104378819 G - C14orf2 3'UTR 0.53 TCGA-VQ-A91K-01 14 104642881 104642881 C A KIF26A Silent p.T1252T 0.39 TCGA-VQ-A91K-01 14 105223033 105223033 G A SIVA1 Missense_Mutation p.G136R 0.27 tolerated(0.29) benign(0.04) TCGA-VQ-A91K-01 14 105223045 105223045 C T SIVA1 Missense_Mutation p.R140C 0.25 deleterious(0) benign(0.115) TCGA-VQ-A91K-01 14 105412102 105412102 A G AHNAK2 Missense_Mutation p.L3229S 0.23 possibly_damaging(0.451) TCGA-VQ-A91K-01 14 105412597 105412597 A G AHNAK2 Missense_Mutation p.L3064S 0.27 possibly_damaging(0.534) TCGA-VQ-A91K-01 14 105416413 105416413 T A AHNAK2 Missense_Mutation p.D1792V 0.38 probably_damaging(0.984) TCGA-VQ-A91K-01 14 105684098 105684098 T C BRF1 Missense_Mutation p.S519G 0.47 tolerated(0.07) possibly_damaging(0.792) TCGA-VQ-A91K-01 14 106173569 106173569 G A IGHA1 Missense_Mutation p.A333V 0.20 deleterious(0.01) probably_damaging(0.928) TCGA-VQ-A91K-01 14 19553734 19553734 C T POTEG Silent p.F106F 0.09 TCGA-VQ-A91K-01 14 20249135 20249135 T G OR4M1 Nonsense_Mutation p.Y218* 0.17 TCGA-VQ-A91K-01 14 20528946 20528946 C T OR4L1 Missense_Mutation p.T248I 0.31 tolerated(0.55) benign(0.113) TCGA-VQ-A91K-01 14 20840982 20840982 G A TEP1 Missense_Mutation p.S2329L 0.31 deleterious(0.02) benign(0.04) TCGA-VQ-A91K-01 14 21109515 21109515 G A OR6S1 Silent p.S112S 0.35 TCGA-VQ-A91K-01 14 21500078 21500078 C T TPPP2 Missense_Mutation p.R119C 0.29 deleterious(0.01) benign(0.061) TCGA-VQ-A91K-01 14 21558582 21558582 G A ZNF219 3'UTR 0.60 TCGA-VQ-A91K-01 14 21836551 21836551 G A SUPT16H Missense_Mutation p.R278C 0.32 deleterious(0) probably_damaging(0.933) TCGA-VQ-A91K-01 14 21991714 21991715 - C SALL2 Frame_Shift_Ins p.Q717Pfs*11 0.11 TCGA-VQ-A91K-01 14 22675933 22675933 C T TRAV34 Missense_Mutation p.T82I 0.21 tolerated(0.1) benign(0.393) TCGA-VQ-A91K-01 14 23893130 23893130 C T MYH7 Missense_Mutation p.A970T 0.40 tolerated(0.05) probably_damaging(0.99) TCGA-VQ-A91K-01 14 24718511 24718511 G A TGM1 3'UTR 0.43 TCGA-VQ-A91K-01 14 24839282 24839282 C A NFATC4 Silent p.T289T 0.38 TCGA-VQ-A91K-01 14 24976636 24976636 G A CMA1 Silent p.N45N 0.31 TCGA-VQ-A91K-01 14 28734392 28734392 T C BNIP3P1 RNA 0.48 TCGA-VQ-A91K-01 14 31642554 31642554 G A HECTD1 Missense_Mutation p.R322C 0.05 deleterious(0) probably_damaging(0.997) TCGA-VQ-A91K-01 14 34243590 34243590 C T NPAS3 Silent p.H300H 0.32 TCGA-VQ-A91K-01 14 35592599 35592599 A C KIAA0391 Missense_Mutation p.T50P 0.38 tolerated(0.06) probably_damaging(0.986) TCGA-VQ-A91K-01 14 36221253 36221253 T C RALGAPA1 Missense_Mutation p.N260S 0.30 deleterious(0.04) benign(0.002) TCGA-VQ-A91K-01 14 36988622 36988622 C T NKX2-1 Intron 0.47 TCGA-VQ-A91K-01 14 38724085 38724085 A C CLEC14A Missense_Mutation p.N381K 0.34 deleterious(0.01) possibly_damaging(0.892) TCGA-VQ-A91K-01 14 44975309 44975309 C T FSCB Silent p.Q294Q 0.34 TCGA-VQ-A91K-01 14 45644540 45644540 A - FANCM Frame_Shift_Del p.D864Ifs*12 0.23 TCGA-VQ-A91K-01 14 50088314 50088314 G A MGAT2 Missense_Mutation p.A110T 0.34 tolerated(0.16) benign(0.002) TCGA-VQ-A91K-01 14 50092542 50092542 C A DNAAF2 Missense_Mutation p.Q744H 0.24 deleterious(0.01) benign(0.423) TCGA-VQ-A91K-01 14 53558539 53558539 T C DDHD1 Missense_Mutation p.K418R 0.26 deleterious(0.01) possibly_damaging(0.881) TCGA-VQ-A91K-01 14 54417346 54417346 G A BMP4 Missense_Mutation p.R211W 0.30 deleterious(0) possibly_damaging(0.802) TCGA-VQ-A91K-01 14 54944775 54944775 C T GMFB 3'UTR 0.50 TCGA-VQ-A91K-01 14 56757067 56757067 G - PELI2 Frame_Shift_Del p.G198Afs*73 0.32 TCGA-VQ-A91K-01 14 64518606 64518606 C T SYNE2 Missense_Mutation p.R2659W 0.30 possibly_damaging(0.599) TCGA-VQ-A91K-01 14 67819646 67819646 T C ATP6V1D Missense_Mutation p.I51M 0.40 deleterious(0.01) possibly_damaging(0.619) TCGA-VQ-A91K-01 14 70490110 70490110 G C SMOC1 Missense_Mutation p.D413H 0.31 deleterious(0) probably_damaging(1) TCGA-VQ-A91K-01 14 70926010 70926010 G A ADAM21 Silent p.R598R 0.32 TCGA-VQ-A91K-01 14 71197285 71197285 C T MAP3K9 Missense_Mutation p.V1057I 0.40 tolerated(0.06) benign(0.221) TCGA-VQ-A91K-01 14 72202008 72202008 T - SIPA1L1 Frame_Shift_Del p.F1697Lfs*11 0.30 TCGA-VQ-A91K-01 14 73029232 73029232 C T RGS6 3'Flank 0.43 TCGA-VQ-A91K-01 14 73572650 73572651 GA - RBM25 Frame_Shift_Del p.E416Afs*21 0.31 TCGA-VQ-A91K-01 14 74516658 74516658 C T CCDC176 Missense_Mutation p.A349V 0.37 deleterious(0) probably_damaging(0.998) TCGA-VQ-A91K-01 14 74823731 74823731 A G VRTN Missense_Mutation p.E82G 0.08 tolerated(0.1) benign(0.005) TCGA-VQ-A91K-01 14 74824498 74824498 C T VRTN Missense_Mutation p.R338W 0.34 deleterious(0.02) probably_damaging(0.95) TCGA-VQ-A91K-01 14 75179769 75179769 C A AC007956.1 Missense_Mutation p.G11V 0.33 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-VQ-A91K-01 14 75265533 75265533 A - YLPM1 Frame_Shift_Del p.M1180Cfs*27 0.23 TCGA-VQ-A91K-01 14 77809556 77809556 T C TMED8 Missense_Mutation p.E242G 0.33 deleterious(0) possibly_damaging(0.876) TCGA-VQ-A91K-01 14 77942070 77942070 C T ISM2 Silent p.T528T 0.42 TCGA-VQ-A91K-01 14 80130239 80130239 G A NRXN3 Missense_Mutation p.G815D 0.35 deleterious(0) benign(0) TCGA-VQ-A91K-01 14 88477092 88477092 A G GPR65 5'UTR 0.55 TCGA-VQ-A91K-01 14 88945888 88945888 G A PTPN21 Silent p.H629H 0.37 TCGA-VQ-A91K-01 14 89087508 89087509 - A EML5 Frame_Shift_Ins p.L1718Pfs*16 0.27 TCGA-VQ-A91K-01 14 92105446 92105446 A - CATSPERB Frame_Shift_Del p.F527Lfs*20 0.20 TCGA-VQ-A91K-01 14 93399081 93399081 G A CHGA Missense_Mutation p.R392Q 0.46 tolerated(0.06) benign(0.005) TCGA-VQ-A91K-01 14 94914917 94914917 C T SERPINA11 Silent p.L65L 0.31 TCGA-VQ-A91K-01 14 95234967 95234967 C T GSC Missense_Mutation p.R212H 0.33 deleterious(0) probably_damaging(1) TCGA-VQ-A91K-01 14 95899647 95899647 A G SYNE3 Missense_Mutation p.Y880H 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A91K-01 14 95921878 95921878 C T SYNE3 Missense_Mutation p.G325S 0.28 tolerated(0.71) benign(0.009) TCGA-VQ-A91K-01 15 101865114 101865114 T C PCSK6 Missense_Mutation p.H772R 0.12 tolerated(0.24) benign(0.005) TCGA-VQ-A91K-01 15 102291866 102291866 C T DNM1P47 RNA 0.37 TCGA-VQ-A91K-01 15 25221463 25221463 C T SNRPN Missense_Mutation p.A56V 0.19 tolerated(0.15) benign(0.069) TCGA-VQ-A91K-01 15 25304706 25304706 A - SNORD116-3 3'Flank 0.27 TCGA-VQ-A91K-01 15 25455140 25455140 G T SNORD115-22 RNA 0.31 TCGA-VQ-A91K-01 15 25924712 25924712 G - ATP10A Frame_Shift_Del p.L1426Cfs*66 0.36 TCGA-VQ-A91K-01 15 25958928 25958928 C T ATP10A Missense_Mutation p.R746H 0.30 deleterious(0) probably_damaging(1) TCGA-VQ-A91K-01 15 28424295 28424295 C T HERC2 Silent p.L3004L 0.16 TCGA-VQ-A91K-01 15 28451467 28451467 G - HERC2 Frame_Shift_Del p.M2378* 0.14 TCGA-VQ-A91K-01 15 31862369 31862369 G T OTUD7A Missense_Mutation p.S61R 0.31 deleterious(0.01) benign(0.329) TCGA-VQ-A91K-01 15 32936003 32936003 C G SCG5 Silent p.G70G 0.39 TCGA-VQ-A91K-01 15 33855184 33855184 T A RYR3 Silent p.T373T 0.42 TCGA-VQ-A91K-01 15 40318222 40318222 G T EIF2AK4 Silent p.L1478L 0.07 TCGA-VQ-A91K-01 15 40557156 40557156 C T PAK6 Missense_Mutation p.S57L 0.19 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91K-01 15 40707168 40707168 G - IVD Frame_Shift_Del p.P294Lfs*18 0.31 TCGA-VQ-A91K-01 15 41689187 41689187 A G NDUFAF1 Missense_Mutation p.L24S 0.40 tolerated(0.23) benign(0.004) TCGA-VQ-A91K-01 15 42054520 42054520 G A MGA Silent p.G2568G 0.21 TCGA-VQ-A91K-01 15 42113839 42113839 C T MAPKBP1 Nonsense_Mutation p.R932* 0.45 TCGA-VQ-A91K-01 15 42454321 42454321 C T VPS39 Missense_Mutation p.R790H 0.33 tolerated(0.2) benign(0.022) TCGA-VQ-A91K-01 15 43023982 43023982 G A CDAN1 Silent p.G525G 0.43 TCGA-VQ-A91K-01 15 43109250 43109250 T G TTBK2 Missense_Mutation p.I195L 0.53 tolerated(0.07) benign(0.112) TCGA-VQ-A91K-01 15 43621896 43621896 G A LCMT2 Silent p.T264T 0.39 TCGA-VQ-A91K-01 15 43822472 43822472 G C MAP1A 3'UTR 0.30 TCGA-VQ-A91K-01 15 44028427 44028427 G A RNU6-354P 5'Flank 0.24 TCGA-VQ-A91K-01 15 44028923 44028923 G T RNU6-354P 5'Flank 0.32 TCGA-VQ-A91K-01 15 44063464 44063464 G - PDIA3 3'UTR 0.40 TCGA-VQ-A91K-01 15 44094053 44094053 T - HYPK 3'UTR 0.41 TCGA-VQ-A91K-01 15 48713783 48713783 T C FBN1 Silent p.S2557S 0.50 TCGA-VQ-A91K-01 15 50279617 50279617 C T ATP8B4 Missense_Mutation p.S240N 0.26 tolerated(0.05) benign(0.009) TCGA-VQ-A91K-01 15 51766611 51766611 C G DMXL2 Missense_Mutation p.M2381I 0.36 tolerated(0.14) benign(0.26) TCGA-VQ-A91K-01 15 53049695 53049695 A - ONECUT1 3'UTR 0.21 TCGA-VQ-A91K-01 15 53815506 53815506 C A WDR72 Silent p.P1054P 0.31 TCGA-VQ-A91K-01 15 57823976 57823976 A G CGNL1 Missense_Mutation p.Q1097R 0.25 deleterious(0) probably_damaging(0.998) TCGA-VQ-A91K-01 15 60656627 60656628 - CTTT ANXA2 Frame_Shift_Ins p.E100Kfs*30 0.33 TCGA-VQ-A91K-01 15 63880967 63880967 G A USP3 Missense_Mutation p.V428I 0.32 tolerated(0.36) probably_damaging(0.999) TCGA-VQ-A91K-01 15 65370260 65370260 C T KBTBD13 Silent p.I369I 0.33 TCGA-VQ-A91K-01 15 65496913 65496913 G A CILP Silent p.D204D 0.42 TCGA-VQ-A91K-01 15 73996314 73996314 G A CD276 Missense_Mutation p.A350T 0.40 tolerated(0.11) probably_damaging(0.956) TCGA-VQ-A91K-01 15 74328056 74328056 C T PML Intron 0.15 TCGA-VQ-A91K-01 15 75042413 75042413 T C CYP1A2 Missense_Mutation p.Y112H 0.37 tolerated(0.29) possibly_damaging(0.543) TCGA-VQ-A91K-01 15 75975239 75975239 C T CSPG4 Silent p.V1531V 0.12 TCGA-VQ-A91K-01 15 76430186 76430186 G A C15orf27 Silent p.T59T 0.37 TCGA-VQ-A91K-01 15 77087710 77087710 G T SCAPER Missense_Mutation p.A228D 0.48 deleterious(0.02) benign(0.358) TCGA-VQ-A91K-01 15 78762910 78762910 C T IREB2 Silent p.F222F 0.39 TCGA-VQ-A91K-01 15 78921983 78921983 C T CHRNB4 Missense_Mutation p.V222M 0.41 deleterious(0) probably_damaging(0.94) TCGA-VQ-A91K-01 15 83349327 83349327 C T AP3B2 Missense_Mutation p.A318T 0.57 tolerated(0.14) benign(0.121) TCGA-VQ-A91K-01 15 83805312 83805312 T - TM6SF1 Frame_Shift_Del p.L336* 0.18 TCGA-VQ-A91K-01 15 84237326 84237326 G A SH3GL3 Missense_Mutation p.R78Q 0.44 tolerated(0.09) possibly_damaging(0.74) TCGA-VQ-A91K-01 15 84652085 84652085 G T ADAMTSL3 Missense_Mutation p.Q1235H 0.33 tolerated(0.23) benign(0.078) TCGA-VQ-A91K-01 15 85198430 85198431 TG - NMB 3'UTR 0.23 TCGA-VQ-A91K-01 15 85213294 85213294 C T SEC11A Missense_Mutation p.V166I 0.43 tolerated(0.15) benign(0.002) TCGA-VQ-A91K-01 15 85452002 85452002 G A SLC28A1 Silent p.L257L 0.53 TCGA-VQ-A91K-01 15 86940602 86940602 C T AGBL1 Missense_Mutation p.R748C 0.31 deleterious(0) probably_damaging(1) TCGA-VQ-A91K-01 15 86940603 86940603 G T AGBL1 Missense_Mutation p.R748L 0.31 deleterious(0) probably_damaging(0.998) TCGA-VQ-A91K-01 15 87066083 87066083 G C AGBL1 Missense_Mutation p.W820C 0.18 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91K-01 15 89416127 89416127 C T ACAN Missense_Mutation p.R2402C 0.22 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91K-01 15 90272323 90272323 A G WDR93 Silent p.S374S 0.33 TCGA-VQ-A91K-01 15 90335411 90335412 TT - ANPEP Frame_Shift_Del p.K836Rfs*53 0.28 TCGA-VQ-A91K-01 15 90623083 90623083 C T ZNF710 3'UTR 0.41 TCGA-VQ-A91K-01 15 91354499 91354499 G T BLM Missense_Mutation p.E1313D 0.29 tolerated(0.55) benign(0.006) TCGA-VQ-A91K-01 15 91423194 91423194 C T FURIN Silent p.I452I 0.29 TCGA-VQ-A91K-01 15 92706441 92706441 A - SLCO3A1 3'UTR 0.41 TCGA-VQ-A91K-01 15 95022241 95022241 G A MCTP2 Missense_Mutation p.R872Q 0.32 deleterious(0.01) possibly_damaging(0.801) TCGA-VQ-A91K-01 15 98514382 98514382 G A ARRDC4 Missense_Mutation p.V408I 0.39 tolerated(0.46) benign(0.003) TCGA-VQ-A91K-01 15 99434582 99434582 G A IGF1R Silent p.A223A 0.20 TCGA-VQ-A91K-01 16 1129718 1129718 G A SSTR5 Missense_Mutation p.G284S 0.41 tolerated(0.22) possibly_damaging(0.508) TCGA-VQ-A91K-01 16 1251695 1251695 G T CACNA1H Silent p.L415L 0.33 TCGA-VQ-A91K-01 16 14957027 14957027 G T NOMO1 Missense_Mutation p.G460W 0.27 deleterious(0) probably_damaging(1) TCGA-VQ-A91K-01 16 15224599 15224599 G T RP11-1186N24.5 RNA 0.58 TCGA-VQ-A91K-01 16 15853486 15853486 G A MYH11 Nonsense_Mutation p.Q457* 0.07 TCGA-VQ-A91K-01 16 16225675 16225675 G A ABCC1 Silent p.P1283P 0.28 TCGA-VQ-A91K-01 16 16244444 16244444 T A ABCC6 Missense_Mutation p.D1465V 0.21 deleterious(0) probably_damaging(0.925) TCGA-VQ-A91K-01 16 17228475 17228475 G A XYLT1 Missense_Mutation p.R628C 0.29 deleterious(0) probably_damaging(0.959) TCGA-VQ-A91K-01 16 1814422 1814422 G A MAPK8IP3 Missense_Mutation p.E747K 0.36 tolerated(0.56) benign(0.047) TCGA-VQ-A91K-01 16 1838021 1838021 A C NUBP2 Missense_Mutation p.N190T 0.33 deleterious(0) probably_damaging(1) TCGA-VQ-A91K-01 16 20797542 20797542 G A ACSM3 Intron 0.47 TCGA-VQ-A91K-01 16 21147728 21147728 G A DNAH3 Missense_Mutation p.T268M 0.33 tolerated(0.12) benign(0.007) TCGA-VQ-A91K-01 16 2229836 2229836 C T CASKIN1 Missense_Mutation p.R1178H 0.21 benign(0.014) TCGA-VQ-A91K-01 16 22339834 22339834 C - POLR3E Frame_Shift_Del p.Q626Rfs*20 0.32 TCGA-VQ-A91K-01 16 23203831 23203831 C T SCNN1G Silent p.T259T 0.42 TCGA-VQ-A91K-01 16 23698813 23698813 C T PLK1 Missense_Mutation p.R354C 0.26 deleterious(0.04) possibly_damaging(0.608) TCGA-VQ-A91K-01 16 23698897 23698898 CA - PLK1 Frame_Shift_Del p.H382Qfs*19 0.20 TCGA-VQ-A91K-01 16 24834898 24834899 TG - TNRC6A Frame_Shift_Del p.C1887Ffs*22 0.27 TCGA-VQ-A91K-01 16 24902255 24902255 C T SLC5A11 Missense_Mutation p.R244W 0.32 tolerated(0.18) probably_damaging(0.971) TCGA-VQ-A91K-01 16 2522299 2522299 C - NTN3 Frame_Shift_Del p.P201Qfs*15 0.44 TCGA-VQ-A91K-01 16 25251602 25251602 A G ZKSCAN2 Silent p.N813N 0.33 TCGA-VQ-A91K-01 16 25258404 25258404 G A ZKSCAN2 Silent p.S371S 0.38 TCGA-VQ-A91K-01 16 27751580 27751580 G A KIAA0556 Silent p.E654E 0.37 TCGA-VQ-A91K-01 16 28112799 28112799 G A XPO6 Missense_Mutation p.R1086W 0.36 deleterious(0) possibly_damaging(0.849) TCGA-VQ-A91K-01 16 28145205 28145205 G A XPO6 Missense_Mutation p.A498V 0.17 deleterious(0.01) possibly_damaging(0.858) TCGA-VQ-A91K-01 16 28508693 28508693 C T APOBR Silent p.G777G 0.33 TCGA-VQ-A91K-01 16 28854266 28854266 G A TUFM 3'UTR 0.34 TCGA-VQ-A91K-01 16 28943875 28943875 G A CD19 Silent p.P99P 0.33 TCGA-VQ-A91K-01 16 29814914 29814914 A G KIF22 Missense_Mutation p.M532V 0.33 tolerated(0.44) benign(0.001) TCGA-VQ-A91K-01 16 30080194 30080194 C T ALDOA Silent p.F199F 0.29 TCGA-VQ-A91K-01 16 3021608 3021608 G A PAQR4 Missense_Mutation p.G161S 0.34 deleterious(0.02) benign(0.278) TCGA-VQ-A91K-01 16 30409798 30409798 C - ZNF48 Frame_Shift_Del p.P411Rfs*2 0.28 TCGA-VQ-A91K-01 16 30515518 30515518 C - ITGAL Frame_Shift_Del p.I725Sfs*5 0.21 TCGA-VQ-A91K-01 16 30977317 30977317 C - SETD1A Frame_Shift_Del p.G708Vfs*95 0.27 TCGA-VQ-A91K-01 16 31075741 31075741 C T ZNF668 Missense_Mutation p.G37S 0.45 tolerated_low_confidence(0.15) benign(0.006) TCGA-VQ-A91K-01 16 31154242 31154242 C T PRSS36 Silent p.A391A 0.40 TCGA-VQ-A91K-01 16 3633348 3633348 T C SLX4 Missense_Mutation p.K1635E 0.39 deleterious(0.04) benign(0.063) TCGA-VQ-A91K-01 16 3716111 3716111 C T TRAP1 Missense_Mutation p.R415Q 0.38 tolerated(0.08) benign(0.037) TCGA-VQ-A91K-01 16 4027611 4027611 C T ADCY9 Silent p.S900S 0.41 TCGA-VQ-A91K-01 16 4042179 4042179 G A ADCY9 Silent p.D725D 0.27 TCGA-VQ-A91K-01 16 4492343 4492343 G A DNAJA3 Silent p.T235T 0.32 TCGA-VQ-A91K-01 16 4816064 4816064 T - ZNF500 5'UTR 0.35 TCGA-VQ-A91K-01 16 48265932 48265932 G - ABCC11 5'UTR 0.21 TCGA-VQ-A91K-01 16 4847428 4847428 G A ROGDI 3'UTR 0.33 TCGA-VQ-A91K-01 16 49525126 49525126 G A ZNF423 3'UTR 0.28 TCGA-VQ-A91K-01 16 50402168 50402168 C A BRD7 Missense_Mutation p.G31W 0.09 deleterious(0) probably_damaging(1) TCGA-VQ-A91K-01 16 5097878 5097878 C G C16orf89 Splice_Site p.X319_splice 0.11 TCGA-VQ-A91K-01 16 52473197 52473197 G C TOX3 Missense_Mutation p.H557Q 0.32 deleterious_low_confidence(0) unknown(0) TCGA-VQ-A91K-01 16 55690679 55690679 C A SLC6A2 Missense_Mutation p.L25I 0.36 tolerated(0.41) benign(0.001) TCGA-VQ-A91K-01 16 56782290 56782290 G A NUP93 Missense_Mutation p.R44H 0.24 tolerated(0.67) benign(0.003) TCGA-VQ-A91K-01 16 56976116 56976116 C T HERPUD1 Silent p.D326D 0.24 TCGA-VQ-A91K-01 16 57265193 57265193 C T RSPRY1 Silent p.Y497Y 0.31 TCGA-VQ-A91K-01 16 58031647 58031647 G A ZNF319 Missense_Mutation p.P175S 0.35 tolerated(0.65) benign(0.004) TCGA-VQ-A91K-01 16 61687654 61687654 C G CDH8 Missense_Mutation p.G753A 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A91K-01 16 66887492 66887492 G - CA7 3'UTR 0.19 TCGA-VQ-A91K-01 16 66944294 66944294 C T CDH16 Missense_Mutation p.R679H 0.37 deleterious(0) probably_damaging(0.941) TCGA-VQ-A91K-01 16 66977247 66977247 A C CES2 Missense_Mutation p.K553T 0.24 deleterious(0.01) probably_damaging(0.976) TCGA-VQ-A91K-01 16 67214369 67214369 G A KIAA0895L Silent p.L49L 0.29 TCGA-VQ-A91K-01 16 67473034 67473034 C T ATP6V0D1 Missense_Mutation p.R219H 0.33 deleterious(0) probably_damaging(1) TCGA-VQ-A91K-01 16 67709514 67709515 AC - GFOD2 Frame_Shift_Del p.C234* 0.33 TCGA-VQ-A91K-01 16 67943172 67943172 C T PSKH1 Silent p.L174L 0.36 TCGA-VQ-A91K-01 16 68835779 68835779 C T CDH1 Missense_Mutation p.R124C 0.29 deleterious(0.03) possibly_damaging(0.634) TCGA-VQ-A91K-01 16 69294116 69294116 G T SNTB2 Missense_Mutation p.A320S 0.31 tolerated(0.18) benign(0.004) TCGA-VQ-A91K-01 16 69965071 69965071 C A WWP2 Missense_Mutation p.P488T 0.36 deleterious(0.04) probably_damaging(0.989) TCGA-VQ-A91K-01 16 70208879 70208879 C A CLEC18C Missense_Mutation p.L52I 0.53 deleterious(0.04) possibly_damaging(0.795) TCGA-VQ-A91K-01 16 70698147 70698147 G - MTSS1L Frame_Shift_Del p.G560Afs*34 0.33 TCGA-VQ-A91K-01 16 70916638 70916638 C A HYDIN Missense_Mutation p.K3380N 0.31 possibly_damaging(0.895) TCGA-VQ-A91K-01 16 72156883 72156883 C T PMFBP1 Missense_Mutation p.A900T 0.20 deleterious(0.05) benign(0.037) TCGA-VQ-A91K-01 16 72845917 72845917 T A ZFHX3 Nonsense_Mutation p.K1184* 0.36 TCGA-VQ-A91K-01 16 72992415 72992415 A G ZFHX3 Missense_Mutation p.S544P 0.38 possibly_damaging(0.806) TCGA-VQ-A91K-01 16 74386068 74386068 G - RP11-252A24.2 RNA 0.17 TCGA-VQ-A91K-01 16 74694872 74694872 C T RFWD3 Missense_Mutation p.R159Q 0.33 tolerated_low_confidence(0.14) benign(0.018) TCGA-VQ-A91K-01 16 75563530 75563530 G A CHST5 Silent p.N251N 0.30 TCGA-VQ-A91K-01 16 75602109 75602109 T C GABARAPL2 Splice_Site p.X88_splice 0.28 TCGA-VQ-A91K-01 16 84623747 84623747 G A COTL1 Silent p.T94T 0.32 TCGA-VQ-A91K-01 16 87445477 87445477 C T ZCCHC14 Silent p.P813P 0.44 TCGA-VQ-A91K-01 16 88907447 88907447 C T GALNS Silent p.P125P 0.30 TCGA-VQ-A91K-01 16 89261272 89261273 - T CDH15 Frame_Shift_Ins p.L719Ffs*6 0.33 TCGA-VQ-A91K-01 16 89347745 89347745 G A ANKRD11 Silent p.L1735L 0.37 TCGA-VQ-A91K-01 16 89774186 89774186 G A VPS9D1 3'UTR 0.46 TCGA-VQ-A91K-01 16 8996248 8996248 C T USP7 Missense_Mutation p.G644D 0.28 tolerated(0.63) benign(0.016) TCGA-VQ-A91K-01 16 89977631 89977631 G - TCF25 Frame_Shift_Del p.E674Sfs*9 0.27 TCGA-VQ-A91K-01 16 9943779 9943779 C T GRIN2A Missense_Mutation p.A388T 0.20 deleterious(0.04) benign(0.054) TCGA-VQ-A91K-01 17 10322114 10322114 T A MYH8 Missense_Mutation p.Y120F 0.36 deleterious(0.01) probably_damaging(0.972) TCGA-VQ-A91K-01 17 12655810 12655810 G A MYOCD Missense_Mutation p.R402Q 0.38 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91K-01 17 12888048 12888048 G T ARHGAP44 Missense_Mutation p.A714S 0.43 tolerated_low_confidence(1) benign(0.001) TCGA-VQ-A91K-01 17 17046886 17046886 C - MPRIP Frame_Shift_Del p.P353Qfs*30 0.27 TCGA-VQ-A91K-01 17 18023177 18023177 C A MYO15A Missense_Mutation p.P355T 0.27 possibly_damaging(0.641) TCGA-VQ-A91K-01 17 18167071 18167071 C T MIEF2 Missense_Mutation p.P131S 0.39 tolerated(0.35) possibly_damaging(0.67) TCGA-VQ-A91K-01 17 18219741 18219741 C T SMCR8 Missense_Mutation p.T213M 0.30 tolerated(0.06) possibly_damaging(0.782) TCGA-VQ-A91K-01 17 18916710 18916710 G A SLC5A10 Missense_Mutation p.V340I 0.31 tolerated_low_confidence(0.56) benign(0) TCGA-VQ-A91K-01 17 19480736 19480736 C A SLC47A1 Missense_Mutation p.P528Q 0.36 tolerated(0.38) benign(0.005) TCGA-VQ-A91K-01 17 20217374 20217374 C T SPECC1 Missense_Mutation p.T1068M 0.25 deleterious(0) probably_damaging(0.975) TCGA-VQ-A91K-01 17 25932682 25932682 G A KSR1 Missense_Mutation p.E498K 0.33 deleterious(0) possibly_damaging(0.83) TCGA-VQ-A91K-01 17 26919738 26919738 G C SPAG5 Missense_Mutation p.A175G 0.46 deleterious_low_confidence(0.01) possibly_damaging(0.477) TCGA-VQ-A91K-01 17 27042281 27042281 C T RAB34 Missense_Mutation p.D206N 0.35 deleterious(0.03) probably_damaging(0.947) TCGA-VQ-A91K-01 17 27062003 27062003 G A NEK8 Missense_Mutation p.S156N 0.38 deleterious(0) probably_damaging(0.974) TCGA-VQ-A91K-01 17 27064751 27064751 A G NEK8 Missense_Mutation p.R296G 0.32 tolerated(0.21) benign(0.001) TCGA-VQ-A91K-01 17 27075363 27075363 G T TRAF4 Missense_Mutation p.Q182H 0.36 tolerated(0.06) benign(0.345) TCGA-VQ-A91K-01 17 27861154 27861154 C - TAOK1 Frame_Shift_Del p.Q794Rfs*8 0.18 TCGA-VQ-A91K-01 17 27939426 27939426 C T ANKRD13B Missense_Mutation p.P422L 0.62 deleterious(0.01) probably_damaging(1) TCGA-VQ-A91K-01 17 29528490 29528490 G A NF1 Missense_Mutation p.R416Q 0.37 tolerated(0.18) benign(0.091) TCGA-VQ-A91K-01 17 30648240 30648240 C - RHBDL3 Frame_Shift_Del p.*405Efs*48 0.31 TCGA-VQ-A91K-01 17 30806294 30806294 T A PSMD11 Missense_Mutation p.L313H 0.32 deleterious(0) probably_damaging(1) TCGA-VQ-A91K-01 17 3144291 3144291 G C OR1D4 RNA 0.32 TCGA-VQ-A91K-01 17 32582422 32582423 - C CCL2 Frame_Shift_Ins p.Q20Pfs*18 0.28 TCGA-VQ-A91K-01 17 33482320 33482320 A G UNC45B Silent p.T215T 0.40 TCGA-VQ-A91K-01 17 34062396 34062396 G A RASL10B Missense_Mutation p.A65T 0.40 tolerated(0.34) benign(0) TCGA-VQ-A91K-01 17 36485586 36485586 T - GPR179 Frame_Shift_Del p.K1289Rfs*12 0.27 TCGA-VQ-A91K-01 17 36499395 36499395 G - GPR179 Frame_Shift_Del p.P93Qfs*57 0.32 TCGA-VQ-A91K-01 17 38251897 38251897 G A NR1D1 Missense_Mutation p.R350C 0.43 tolerated(0.07) benign(0.001) TCGA-VQ-A91K-01 17 38552675 38552675 G T TOP2A Missense_Mutation p.P1194T 0.36 tolerated(0.54) benign(0.001) TCGA-VQ-A91K-01 17 38643407 38643407 C T TNS4 Missense_Mutation p.R390Q 0.41 tolerated(0.41) benign(0.007) TCGA-VQ-A91K-01 17 38904535 38904535 G T KRT25 Missense_Mutation p.S449R 0.41 deleterious_low_confidence(0.01) benign(0.051) TCGA-VQ-A91K-01 17 38928009 38928009 G A KRT26 Silent p.Y119Y 0.35 TCGA-VQ-A91K-01 17 39383032 39383032 C T KRTAP9-2 Silent p.C42C 0.37 TCGA-VQ-A91K-01 17 39502888 39502888 G A KRT33A Silent p.S303S 0.23 TCGA-VQ-A91K-01 17 39684416 39684416 C T KRT19 Silent p.G28G 0.57 TCGA-VQ-A91K-01 17 40004562 40004562 C A KLHL10 3'UTR 0.32 TCGA-VQ-A91K-01 17 40689459 40689459 G A NAGLU Missense_Mutation p.V143M 0.30 deleterious(0) probably_damaging(0.957) TCGA-VQ-A91K-01 17 43180372 43180372 G T NMT1 Silent p.V349V 0.31 TCGA-VQ-A91K-01 17 43317949 43317949 C T FMNL1 Missense_Mutation p.A396V 0.37 tolerated(0.21) unknown(0) TCGA-VQ-A91K-01 17 43332718 43332718 T G SPATA32 Silent p.T277T 0.32 TCGA-VQ-A91K-01 17 43923572 43923572 T C SPPL2C Silent p.L434L 0.36 TCGA-VQ-A91K-01 17 4435852 4435852 G T SPNS2 Missense_Mutation p.G270C 0.30 deleterious(0) probably_damaging(1) TCGA-VQ-A91K-01 17 44408216 44408216 G T LRRC37A Missense_Mutation p.Q1191H 0.27 deleterious(0.05) benign(0.122) TCGA-VQ-A91K-01 17 44806264 44806264 G T NSF Missense_Mutation p.Q624H 0.26 deleterious(0) probably_damaging(0.998) TCGA-VQ-A91K-01 17 45451978 45451978 A - EFCAB13 Frame_Shift_Del p.S342Afs*25 0.26 TCGA-VQ-A91K-01 17 45773691 45773691 C T TBKBP1 Silent p.V71V 0.36 TCGA-VQ-A91K-01 17 45822541 45822541 C - TBX21 Frame_Shift_Del p.L475Wfs*66 0.33 TCGA-VQ-A91K-01 17 4689280 4689280 C T VMO1 Missense_Mutation p.R88H 0.36 tolerated(0.13) possibly_damaging(0.863) TCGA-VQ-A91K-01 17 47123357 47123357 C T IGF2BP1 Missense_Mutation p.R501W 0.30 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91K-01 17 48154422 48154422 C T ITGA3 Silent p.D669D 0.35 TCGA-VQ-A91K-01 17 4837372 4837373 - A GP1BA Frame_Shift_Ins p.T494Nfs*4 0.43 TCGA-VQ-A91K-01 17 48618666 48618666 G A EPN3 Silent p.L442L 0.32 TCGA-VQ-A91K-01 17 48918291 48918291 G A WFIKKN2 Missense_Mutation p.A548T 0.08 tolerated(0.31) benign(0.004) TCGA-VQ-A91K-01 17 5033973 5033973 T A USP6 Missense_Mutation p.I50N 0.36 deleterious_low_confidence(0) benign(0.308) TCGA-VQ-A91K-01 17 5036825 5036825 A - USP6 Frame_Shift_Del p.N123Tfs*8 0.23 TCGA-VQ-A91K-01 17 534812 534812 G A VPS53 Missense_Mutation p.A222V 0.36 tolerated(0.1) benign(0.116) TCGA-VQ-A91K-01 17 55752327 55752327 C T MSI2 Intron 0.30 TCGA-VQ-A91K-01 17 56058095 56058095 C T VEZF1 Missense_Mutation p.R282H 0.37 tolerated(0.12) probably_damaging(0.926) TCGA-VQ-A91K-01 17 56435161 56435161 C - RNF43 Frame_Shift_Del p.G659Vfs*41 0.29 TCGA-VQ-A91K-01 17 56437531 56437531 G - RNF43 Frame_Shift_Del p.L311Sfs*108 0.26 TCGA-VQ-A91K-01 17 56682451 56682451 G A TEX14 Silent p.P414P 0.42 TCGA-VQ-A91K-01 17 57215235 57215235 T - SKA2 Intron 0.46 TCGA-VQ-A91K-01 17 58040369 58040369 T A RNFT1 Silent p.V111V 0.61 TCGA-VQ-A91K-01 17 58235796 58235796 C T CA4 Missense_Mutation p.H245Y 0.28 deleterious(0.02) possibly_damaging(0.882) TCGA-VQ-A91K-01 17 58504090 58504090 G A C17orf64 Missense_Mutation p.R114Q 0.42 tolerated(0.23) benign(0.319) TCGA-VQ-A91K-01 17 59161841 59161841 C T BCAS3 Missense_Mutation p.R796C 0.41 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91K-01 17 6023826 6023826 G A WSCD1 Missense_Mutation p.E525K 0.33 deleterious(0) possibly_damaging(0.689) TCGA-VQ-A91K-01 17 61497894 61497894 C - TANC2 Frame_Shift_Del p.P1519Lfs*33 0.31 TCGA-VQ-A91K-01 17 61895083 61895083 C A DDX42 Silent p.A714A 0.22 TCGA-VQ-A91K-01 17 61950575 61950575 G A CSH2 Silent p.R45R 0.13 TCGA-VQ-A91K-01 17 62049785 62049785 C T SCN4A Missense_Mutation p.A107T 0.33 deleterious(0.02) benign(0.032) TCGA-VQ-A91K-01 17 6364736 6364736 G A PITPNM3 Missense_Mutation p.P816L 0.36 deleterious(0) probably_damaging(0.954) TCGA-VQ-A91K-01 17 65918960 65918960 G A BPTF Silent p.T1854T 0.38 TCGA-VQ-A91K-01 17 6594199 6594199 C T SLC13A5 Missense_Mutation p.A446T 0.38 tolerated(0.39) benign(0.008) TCGA-VQ-A91K-01 17 66538182 66538182 G - FAM20A Frame_Shift_Del p.R352Gfs*30 0.26 TCGA-VQ-A91K-01 17 66871786 66871786 G A ABCA8 Nonsense_Mutation p.R1447* 0.33 TCGA-VQ-A91K-01 17 66890370 66890370 G T ABCA8 Missense_Mutation p.L954I 0.25 deleterious(0) probably_damaging(1) TCGA-VQ-A91K-01 17 66992086 66992086 T C ABCA9 Missense_Mutation p.M1169V 0.33 tolerated(0.39) benign(0.001) TCGA-VQ-A91K-01 17 6703404 6703404 C T TEKT1 Missense_Mutation p.R400Q 0.40 tolerated(0.35) benign(0.001) TCGA-VQ-A91K-01 17 68128239 68128239 A G KCNJ16 Missense_Mutation p.Y4C 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.72) TCGA-VQ-A91K-01 17 72470705 72470705 G A CD300A Silent p.A138A 0.40 TCGA-VQ-A91K-01 17 72759514 72759514 G A SLC9A3R1 Silent p.G204G 0.40 TCGA-VQ-A91K-01 17 72916569 72916569 G A USH1G Missense_Mutation p.A121V 0.27 deleterious(0) possibly_damaging(0.863) TCGA-VQ-A91K-01 17 72959842 72959842 C T HID1 Missense_Mutation p.R127Q 0.50 tolerated(0.41) benign(0.009) TCGA-VQ-A91K-01 17 73231737 73231737 G A NUP85 Missense_Mutation p.R645Q 0.31 deleterious(0.02) benign(0.009) TCGA-VQ-A91K-01 17 73497951 73497951 C T CASKIN2 Silent p.G1068G 0.31 TCGA-VQ-A91K-01 17 73520399 73520399 G T TSEN54 Missense_Mutation p.G496V 0.33 deleterious(0) probably_damaging(1) TCGA-VQ-A91K-01 17 73555461 73555461 G A LLGL2 Missense_Mutation p.R167Q 0.38 tolerated(1) benign(0.003) TCGA-VQ-A91K-01 17 7359906 7359908 AGG - CHRNB1 In_Frame_Del p.E458del 0.26 TCGA-VQ-A91K-01 17 74383650 74383650 C T SPHK1 Missense_Mutation p.P466S 0.25 tolerated_low_confidence(0.2) benign(0.031) TCGA-VQ-A91K-01 17 74386988 74386988 C T UBE2O 3'UTR 0.35 TCGA-VQ-A91K-01 17 74469979 74469979 C T RHBDF2 Missense_Mutation p.C556Y 0.34 deleterious(0.01) probably_damaging(0.984) TCGA-VQ-A91K-01 17 76063987 76063987 A - TNRC6C Frame_Shift_Del p.G920Dfs*6 0.26 TCGA-VQ-A91K-01 17 76969262 76969262 G A LGALS3BP Missense_Mutation p.S140L 0.46 tolerated(0.07) benign(0.032) TCGA-VQ-A91K-01 17 7752154 7752154 C T KDM6B Missense_Mutation p.P850S 0.38 possibly_damaging(0.803) TCGA-VQ-A91K-01 17 77758094 77758094 C T CBX2 Silent p.C284C 0.07 TCGA-VQ-A91K-01 17 78082511 78082511 G A GAA Missense_Mutation p.D404N 0.33 deleterious(0.01) probably_damaging(0.991) TCGA-VQ-A91K-01 17 7849160 7849160 C T CNTROB Missense_Mutation p.R617W 0.35 deleterious(0) probably_damaging(0.995) TCGA-VQ-A91K-01 17 78829306 78829306 C T RPTOR Missense_Mutation p.L453F 0.29 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91K-01 17 78936363 78936363 G A RPTOR Silent p.A1265A 0.39 TCGA-VQ-A91K-01 17 79671379 79671379 C - SLC25A10 Frame_Shift_Del p.K63Rfs*24 0.45 TCGA-VQ-A91K-01 17 7978934 7978934 G C ALOX12B Missense_Mutation p.L545V 0.37 deleterious(0) benign(0.422) TCGA-VQ-A91K-01 17 80054196 80054196 C T FASN Silent p.A42A 0.39 TCGA-VQ-A91K-01 17 8014721 8014721 C G ALOXE3 Missense_Mutation p.A437P 0.24 deleterious(0) probably_damaging(0.991) TCGA-VQ-A91K-01 17 80210963 80210963 A G CSNK1D Missense_Mutation p.I165T 0.29 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-VQ-A91K-01 17 8047128 8047128 C T PER1 Missense_Mutation p.R843H 0.48 deleterious(0) probably_damaging(0.967) TCGA-VQ-A91K-01 17 8065660 8065661 - G VAMP2 Frame_Shift_Ins p.A11Cfs*19 0.23 TCGA-VQ-A91K-01 17 8170186 8170186 C - PFAS Frame_Shift_Del p.H980Tfs*15 0.37 TCGA-VQ-A91K-01 17 8660619 8660619 C T SPDYE4 Missense_Mutation p.V101M 0.53 deleterious(0.04) benign(0.369) TCGA-VQ-A91K-01 17 8926619 8926619 C T NTN1 Missense_Mutation p.T310M 0.36 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91K-01 18 10471815 10471815 C T APCDD1 Silent p.D177D 0.35 TCGA-VQ-A91K-01 18 12311005 12311005 G A TUBB6 Missense_Mutation p.R77Q 0.48 deleterious_low_confidence(0.01) benign(0.105) TCGA-VQ-A91K-01 18 12325335 12325335 T C TUBB6 Missense_Mutation p.Y183H 0.41 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-VQ-A91K-01 18 13643394 13643394 C T LDLRAD4 Missense_Mutation p.R125W 0.38 deleterious(0.01) possibly_damaging(0.487) TCGA-VQ-A91K-01 18 18533679 18533679 T - ROCK1 Frame_Shift_Del p.K1307Nfs*3 0.30 TCGA-VQ-A91K-01 18 19154189 19154189 G A ESCO1 Missense_Mutation p.R206C 0.28 tolerated(0.08) benign(0.004) TCGA-VQ-A91K-01 18 19359513 19359513 G A MIB1 Missense_Mutation p.E259K 0.40 deleterious(0.01) possibly_damaging(0.768) TCGA-VQ-A91K-01 18 19751547 19751547 T G GATA6 Missense_Mutation p.Y148D 0.22 deleterious(0) probably_damaging(0.95) TCGA-VQ-A91K-01 18 21017852 21017852 C T TMEM241 5'UTR 0.46 TCGA-VQ-A91K-01 18 21110522 21110522 C T C18orf8 Missense_Mutation p.R614C 0.30 deleterious(0) possibly_damaging(0.828) TCGA-VQ-A91K-01 18 28660264 28660264 C T DSC2 Missense_Mutation p.E440K 0.40 deleterious(0) probably_damaging(0.955) TCGA-VQ-A91K-01 18 28720063 28720063 G T DSC1 Missense_Mutation p.Q488K 0.34 tolerated(0.12) benign(0.002) TCGA-VQ-A91K-01 18 33704577 33704578 - GGACAG SLC39A6 In_Frame_Ins p.C291_P292dup 0.47 TCGA-VQ-A91K-01 18 40323632 40323632 A - RIT2 Frame_Shift_Del p.F160Lfs*18 0.26 TCGA-VQ-A91K-01 18 44036730 44036730 G A RNF165 3'UTR 0.50 TCGA-VQ-A91K-01 18 45555776 45555776 C - ZBTB7C Frame_Shift_Del p.G572Afs*155 0.29 TCGA-VQ-A91K-01 18 48604703 48604703 T C SMAD4 Missense_Mutation p.W509R 0.59 deleterious(0) probably_damaging(1) TCGA-VQ-A91K-01 18 5396323 5396323 C T EPB41L3 Silent p.T950T 0.32 TCGA-VQ-A91K-01 18 55329760 55329760 A - ATP8B1 Frame_Shift_Del p.P792Hfs*8 0.37 TCGA-VQ-A91K-01 18 6977800 6977800 A C LAMA1 Missense_Mutation p.L2091V 0.22 deleterious(0) probably_damaging(1) TCGA-VQ-A91K-01 18 7037695 7037695 G T LAMA1 Missense_Mutation p.P540Q 0.32 tolerated(0.71) benign(0.003) TCGA-VQ-A91K-01 18 76753134 76753134 G T SALL3 Silent p.A381A 0.38 TCGA-VQ-A91K-01 18 76755287 76755287 C T SALL3 Missense_Mutation p.A1099V 0.53 tolerated(0.13) benign(0.154) TCGA-VQ-A91K-01 18 7888243 7888243 G C PTPRM Silent p.G112G 0.25 TCGA-VQ-A91K-01 18 8784707 8784707 G A SOGA2 Missense_Mutation p.V533M 0.26 tolerated(0.06) benign(0.382) TCGA-VQ-A91K-01 19 1056431 1056431 G A ABCA7 Missense_Mutation p.A1507T 0.88 tolerated(0.39) benign(0.042) TCGA-VQ-A91K-01 19 11453582 11453582 T C TMEM205 Missense_Mutation p.Y160C 0.11 deleterious(0) possibly_damaging(0.711) TCGA-VQ-A91K-01 19 11917140 11917140 G A ZNF491 Silent p.T124T 0.72 TCGA-VQ-A91K-01 19 1490228 1490228 C T PCSK4 Missense_Mutation p.V40I 0.76 deleterious(0.01) probably_damaging(0.941) TCGA-VQ-A91K-01 19 15281250 15281250 C T NOTCH3 Missense_Mutation p.R1669H 0.82 tolerated(0.1) probably_damaging(0.999) TCGA-VQ-A91K-01 19 16268265 16268265 C T HSH2D 3'Flank 0.69 TCGA-VQ-A91K-01 19 17081703 17081703 G - CPAMD8 Frame_Shift_Del p.R785Efs*32 0.43 TCGA-VQ-A91K-01 19 1800401 1800401 G A ATP8B3 Silent p.F400F 0.64 TCGA-VQ-A91K-01 19 1881410 1881410 G - ABHD17A Frame_Shift_Del p.L53Wfs*4 0.43 TCGA-VQ-A91K-01 19 33700300 33700300 C T SLC7A10 Missense_Mutation p.G452D 0.31 deleterious(0) probably_damaging(1) TCGA-VQ-A91K-01 19 33792452 33792452 T A CEBPA Missense_Mutation p.E290V 0.38 deleterious(0) probably_damaging(0.984) TCGA-VQ-A91K-01 19 35651654 35651654 C T FXYD5 Missense_Mutation p.T81M 0.33 tolerated(0.6) benign(0) TCGA-VQ-A91K-01 19 35786676 35786676 C - MAG Frame_Shift_Del p.P71Rfs*10 0.28 TCGA-VQ-A91K-01 19 36044008 36044008 G A ATP4A Silent p.C894C 0.33 TCGA-VQ-A91K-01 19 36278946 36278946 G A ARHGAP33 Missense_Mutation p.R999Q 0.47 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-VQ-A91K-01 19 36595746 36595746 A G WDR62 Missense_Mutation p.H1463R 0.50 tolerated(0.55) benign(0.009) TCGA-VQ-A91K-01 19 37005950 37005950 C T ZNF260 Missense_Mutation p.C64Y 0.18 deleterious(0.03) benign(0) TCGA-VQ-A91K-01 19 37038546 37038546 G T ZNF529 Missense_Mutation p.T305N 0.34 deleterious(0.03) probably_damaging(0.984) TCGA-VQ-A91K-01 19 372669 372669 C T THEG Silent p.R199R 0.83 TCGA-VQ-A91K-01 19 37368491 37368491 C T ZNF345 Silent p.T253T 0.29 TCGA-VQ-A91K-01 19 3834828 3834828 G A ZFR2 Silent p.A69A 0.27 TCGA-VQ-A91K-01 19 38853200 38853200 C T CATSPERG Missense_Mutation p.T781M 0.11 tolerated(0.27) possibly_damaging(0.897) TCGA-VQ-A91K-01 19 39691009 39691009 C T NCCRP1 Missense_Mutation p.A191V 0.29 tolerated(0.34) benign(0.003) TCGA-VQ-A91K-01 19 39691058 39691058 G A NCCRP1 Silent p.T207T 0.37 TCGA-VQ-A91K-01 19 39823737 39823737 C G GMFG Missense_Mutation p.E60D 0.39 tolerated(0.05) benign(0.013) TCGA-VQ-A91K-01 19 39971268 39971268 C T TIMM50 Silent p.G28G 0.36 TCGA-VQ-A91K-01 19 40222036 40222036 C T CLC Missense_Mutation p.S138N 0.31 tolerated(0.21) benign(0.002) TCGA-VQ-A91K-01 19 40433693 40433693 T A FCGBP Missense_Mutation p.R192S 0.35 benign(0) TCGA-VQ-A91K-01 19 40827776 40827776 G A C19orf47 3'UTR 0.46 TCGA-VQ-A91K-01 19 41008749 41008751 AGG - SPTBN4 In_Frame_Del p.E425del 0.32 TCGA-VQ-A91K-01 19 42558581 42558581 C T GRIK5 Missense_Mutation p.S316N 0.33 tolerated(0.49) benign(0.003) TCGA-VQ-A91K-01 19 42585428 42585428 G - ZNF574 Frame_Shift_Del p.V892Sfs*47 0.28 TCGA-VQ-A91K-01 19 44500633 44500633 G A ZNF155 Silent p.V219V 0.10 TCGA-VQ-A91K-01 19 45315636 45315636 C T BCAM Missense_Mutation p.L141F 0.31 deleterious(0.01) probably_damaging(0.972) TCGA-VQ-A91K-01 19 45535988 45535988 G A RELB Silent p.T396T 0.44 TCGA-VQ-A91K-01 19 45655599 45655599 C T NKPD1 Missense_Mutation p.R699H 0.37 tolerated(0.16) benign(0.006) TCGA-VQ-A91K-01 19 46002420 46002420 G A PPM1N Silent p.S230S 0.44 TCGA-VQ-A91K-01 19 46375516 46375516 G A FOXA3 Missense_Mutation p.G85S 0.32 tolerated(0.79) unknown(0) TCGA-VQ-A91K-01 19 46393942 46393942 G - MYPOP Frame_Shift_Del p.P380Hfs*26 0.35 TCGA-VQ-A91K-01 19 4660712 4660712 C T C19orf10 Missense_Mutation p.R113Q 0.65 tolerated(0.36) benign(0.011) TCGA-VQ-A91K-01 19 46663969 46663969 G A IGFL2 Missense_Mutation p.V69M 0.42 deleterious(0.01) possibly_damaging(0.621) TCGA-VQ-A91K-01 19 47236312 47236312 C T STRN4 Missense_Mutation p.E241K 0.32 tolerated(0.25) benign(0.07) TCGA-VQ-A91K-01 19 4792887 4792887 C - FEM1A Frame_Shift_Del p.P342Hfs*22 0.42 TCGA-VQ-A91K-01 19 49362254 49362254 G A PLEKHA4 Nonsense_Mutation p.R279* 0.26 TCGA-VQ-A91K-01 19 49850473 49850473 G - TEAD2 Frame_Shift_Del p.H299Mfs*12 0.27 TCGA-VQ-A91K-01 19 49925704 49925704 A C PTH2 3'UTR 0.41 TCGA-VQ-A91K-01 19 50374936 50374936 G - AKT1S1 Frame_Shift_Del p.T186Pfs*87 0.22 TCGA-VQ-A91K-01 19 50774700 50774700 C T MYH14 Missense_Mutation p.A1023V 0.38 deleterious(0) possibly_damaging(0.814) TCGA-VQ-A91K-01 19 50804951 50804951 C T MYH14 Missense_Mutation p.R1835C 0.26 deleterious(0) probably_damaging(1) TCGA-VQ-A91K-01 19 51009411 51009411 C T JOSD2 3'UTR 0.50 TCGA-VQ-A91K-01 19 51165226 51165226 C A SHANK1 Missense_Mutation p.R2161M 0.21 unknown(0) TCGA-VQ-A91K-01 19 51228619 51228619 C T CLEC11A Silent p.N289N 0.38 TCGA-VQ-A91K-01 19 51506458 51506458 C - KLK9 Frame_Shift_Del p.G221Vfs*50 0.24 TCGA-VQ-A91K-01 19 51960741 51960741 G A SIGLEC8 Missense_Mutation p.T236I 0.29 tolerated(0.05) benign(0.009) TCGA-VQ-A91K-01 19 52023345 52023345 T C SIGLEC6 Missense_Mutation p.I451M 0.47 deleterious(0.05) possibly_damaging(0.496) TCGA-VQ-A91K-01 19 53270063 53270063 T C ZNF600 Missense_Mutation p.T316A 0.36 tolerated(0.45) benign(0.112) TCGA-VQ-A91K-01 19 53884385 53884385 A C ZNF525 Missense_Mutation p.K185Q 0.38 tolerated(0.44) benign(0.344) TCGA-VQ-A91K-01 19 53994523 53994523 G A ZNF813 Missense_Mutation p.R346H 0.26 tolerated(0.32) benign(0.021) TCGA-VQ-A91K-01 19 54255673 54255673 G T MIR519A1 RNA 0.30 TCGA-VQ-A91K-01 19 54445327 54445327 G A CACNG7 Missense_Mutation p.R203H 0.35 deleterious(0) probably_damaging(0.997) TCGA-VQ-A91K-01 19 54627195 54627195 G A PRPF31 Missense_Mutation p.A199T 0.46 tolerated(0.57) benign(0.011) TCGA-VQ-A91K-01 19 54696041 54696041 G T TSEN34 Missense_Mutation p.A188S 0.33 tolerated(0.34) benign(0.068) TCGA-VQ-A91K-01 19 54802181 54802181 A G LILRA3 Missense_Mutation p.V336A 0.21 deleterious(0.01) probably_damaging(0.971) TCGA-VQ-A91K-01 19 55593900 55593900 C T EPS8L1 Silent p.L382L 0.42 TCGA-VQ-A91K-01 19 55748039 55748039 C - PPP6R1 Frame_Shift_Del p.A654Pfs*264 0.42 TCGA-VQ-A91K-01 19 56133402 56133402 G A ZNF784 Silent p.C229C 0.44 TCGA-VQ-A91K-01 19 56368972 56368972 A - NLRP4 Intron 0.28 TCGA-VQ-A91K-01 19 56953312 56953312 A T ZNF667 Missense_Mutation p.I351N 0.28 deleterious(0.04) possibly_damaging(0.694) TCGA-VQ-A91K-01 19 56953505 56953505 C A ZNF667 Missense_Mutation p.G287W 0.26 deleterious(0) possibly_damaging(0.868) TCGA-VQ-A91K-01 19 57036281 57036281 G C ZNF471 Missense_Mutation p.R282T 0.28 deleterious(0.03) probably_damaging(0.998) TCGA-VQ-A91K-01 19 57175637 57175637 G T ZNF835 Missense_Mutation p.D310E 0.52 tolerated(1) benign(0.021) TCGA-VQ-A91K-01 19 57910254 57910254 G A ZNF548 Missense_Mutation p.S212N 0.32 tolerated(0.09) benign(0.368) TCGA-VQ-A91K-01 19 57910902 57910902 C T ZNF548 Missense_Mutation p.T428M 0.24 deleterious(0) probably_damaging(0.935) TCGA-VQ-A91K-01 19 58320338 58320338 C T ZNF552 Silent p.P98P 0.22 TCGA-VQ-A91K-01 19 58384197 58384197 G T ZNF814 Missense_Mutation p.A854D 0.24 tolerated(0.15) benign(0.054) TCGA-VQ-A91K-01 19 58438876 58438877 - A ZNF418 Frame_Shift_Ins p.P225Sfs*3 0.23 TCGA-VQ-A91K-01 19 58601567 58601567 G A ZSCAN18 Missense_Mutation p.P79L 0.43 tolerated(0.76) benign(0.001) TCGA-VQ-A91K-01 19 58904526 58904526 G A RPS5 Missense_Mutation p.E98K 0.42 deleterious(0.02) probably_damaging(0.929) TCGA-VQ-A91K-01 19 622928 622928 G A POLRMT Missense_Mutation p.R450W 0.16 deleterious(0) possibly_damaging(0.556) TCGA-VQ-A91K-01 19 7585004 7585004 G A ZNF358 Silent p.P292P 0.81 TCGA-VQ-A91K-01 19 8038648 8038648 G A ELAVL1 Missense_Mutation p.R131W 0.67 deleterious(0) possibly_damaging(0.615) TCGA-VQ-A91K-01 19 8615521 8615521 C T MYO1F Missense_Mutation p.V277M 0.73 deleterious(0.01) possibly_damaging(0.8) TCGA-VQ-A91K-01 19 9492024 9492024 C A ZNF177 Silent p.P339P 0.64 TCGA-VQ-A91K-01 19 9965535 9965535 C T OLFM2 Nonsense_Mutation p.W231* 0.88 TCGA-VQ-A91K-01 1 103428232 103428232 C A COL11A1 Missense_Mutation p.A1001S 0.32 unknown(0) TCGA-VQ-A91K-01 1 10386331 10386331 C T KIF1B Silent p.D900D 0.37 TCGA-VQ-A91K-01 1 10689864 10689864 G A PEX14 Silent p.E318E 0.29 TCGA-VQ-A91K-01 1 10720277 10720277 G T CASZ1 Silent p.P274P 0.37 TCGA-VQ-A91K-01 1 109804248 109804248 C T CELSR2 Missense_Mutation p.A1432V 0.35 deleterious(0.03) probably_damaging(0.995) TCGA-VQ-A91K-01 1 110607216 110607216 C T ALX3 Missense_Mutation p.R196Q 0.30 deleterious(0) probably_damaging(0.968) TCGA-VQ-A91K-01 1 11128067 11128067 G A EXOSC10 Silent p.D875D 0.29 TCGA-VQ-A91K-01 1 11128120 11128120 T - EXOSC10 Frame_Shift_Del p.I858Lfs*? 0.23 TCGA-VQ-A91K-01 1 111983893 111983893 C A WDR77 Nonsense_Mutation p.E330* 0.09 TCGA-VQ-A91K-01 1 11303223 11303223 G A MTOR Missense_Mutation p.R454C 0.33 deleterious(0.03) benign(0.232) TCGA-VQ-A91K-01 1 11333899 11333899 A G UBIAD1 Missense_Mutation p.Y104C 0.33 deleterious(0) probably_damaging(1) TCGA-VQ-A91K-01 1 1139024 1139025 TC - TNFRSF18 Frame_Shift_Del p.E238Dfs*13 0.39 TCGA-VQ-A91K-01 1 114340554 114340554 G A RSBN1 Missense_Mutation p.R270C 0.40 deleterious_low_confidence(0) possibly_damaging(0.827) TCGA-VQ-A91K-01 1 11574466 11574466 G - PTCHD2 Frame_Shift_Del p.T448Qfs*71 0.25 TCGA-VQ-A91K-01 1 117491931 117491931 T A PTGFRN Missense_Mutation p.F317Y 0.44 tolerated(0.09) benign(0.02) TCGA-VQ-A91K-01 1 11983529 11983531 TCT - KIAA2013 In_Frame_Del p.K350del 0.27 TCGA-VQ-A91K-01 1 12030858 12030858 C T PLOD1 Silent p.P629P 0.30 TCGA-VQ-A91K-01 1 1222275 1222275 C - SCNN1D Frame_Shift_Del p.F349Sfs*12 0.18 TCGA-VQ-A91K-01 1 1273953 1273953 C A DVL1 Nonsense_Mutation p.E405* 0.40 TCGA-VQ-A91K-01 1 12785711 12785711 G A AADACL3 Silent p.S267S 0.32 TCGA-VQ-A91K-01 1 1290110 1290111 GG - MXRA8 Frame_Shift_Del p.R301Gfs*85 0.53 TCGA-VQ-A91K-01 1 12921573 12921573 C - PRAMEF2 Frame_Shift_Del p.C457Afs*39 0.24 TCGA-VQ-A91K-01 1 13001124 13001124 T G PRAMEF6 Missense_Mutation p.I187L 0.22 deleterious(0.01) benign(0.016) TCGA-VQ-A91K-01 1 13719053 13719053 T G PRAMEF17 3'UTR 0.26 TCGA-VQ-A91K-01 1 14106007 14106007 A - PRDM2 Frame_Shift_Del p.I574Ffs*12 0.24 TCGA-VQ-A91K-01 1 144994973 144994973 G A PDE4DIP 5'UTR 0.08 TCGA-VQ-A91K-01 1 145282046 145282046 G T NOTCH2NL 3'UTR 0.07 TCGA-VQ-A91K-01 1 145578466 145578466 G A PIAS3 Silent p.R143R 0.28 TCGA-VQ-A91K-01 1 149755781 149755781 G A FCGR1A Missense_Mutation p.R92Q 0.29 tolerated(0.07) benign(0.001) TCGA-VQ-A91K-01 1 149859463 149859463 A G HIST2H2AB Missense_Mutation p.S2P 0.22 deleterious_low_confidence(0.01) benign(0.184) TCGA-VQ-A91K-01 1 150246562 150246562 C - C1orf54 Frame_Shift_Del p.S42Vfs*22 0.26 TCGA-VQ-A91K-01 1 150549908 150549908 C T MCL1 Silent p.L332L 0.35 TCGA-VQ-A91K-01 1 151110868 151110868 C T SEMA6C Silent p.Q157Q 0.38 TCGA-VQ-A91K-01 1 151133217 151133217 G T LYSMD1 3'UTR 0.43 TCGA-VQ-A91K-01 1 151378601 151378601 C T POGZ Silent p.K970K 0.39 TCGA-VQ-A91K-01 1 152057856 152057856 C A TCHHL1 Nonsense_Mutation p.E768* 0.42 TCGA-VQ-A91K-01 1 152636719 152636719 C G LCE2D Silent p.S46S 0.43 TCGA-VQ-A91K-01 1 152884110 152884110 C T IVL 3'UTR 0.40 TCGA-VQ-A91K-01 1 152944379 152944379 C T SPRR4 Nonsense_Mutation p.Q5* 0.40 TCGA-VQ-A91K-01 1 153362605 153362605 T - S100A8 Frame_Shift_Del p.S86Afs*10 0.24 TCGA-VQ-A91K-01 1 153509850 153509850 G A S100A5 Silent p.I67I 0.30 TCGA-VQ-A91K-01 1 153745738 153745738 A G INTS3 Missense_Mutation p.S1041G 0.33 deleterious(0) probably_damaging(0.916) TCGA-VQ-A91K-01 1 153902744 153902744 C T DENND4B 3'UTR 0.27 TCGA-VQ-A91K-01 1 154148663 154148663 C T TPM3 Missense_Mutation p.R102H 0.38 deleterious(0.03) probably_damaging(1) TCGA-VQ-A91K-01 1 154314956 154314956 G T ATP8B2 Missense_Mutation p.G448V 0.28 deleterious(0.02) possibly_damaging(0.639) TCGA-VQ-A91K-01 1 154473981 154473981 G A SHE Silent p.S174S 0.22 TCGA-VQ-A91K-01 1 154574964 154574964 G A ADAR Missense_Mutation p.P52S 0.42 tolerated(0.38) benign(0.009) TCGA-VQ-A91K-01 1 154987863 154987863 G T ZBTB7B Missense_Mutation p.G277C 0.36 deleterious(0.01) possibly_damaging(0.473) TCGA-VQ-A91K-01 1 155018875 155018875 C G DCST1 Missense_Mutation p.L470V 0.40 tolerated(0.17) possibly_damaging(0.759) TCGA-VQ-A91K-01 1 155264505 155264505 C T PKLR Missense_Mutation p.V245I 0.50 tolerated(0.55) benign(0.001) TCGA-VQ-A91K-01 1 155581996 155581996 G A MSTO1 Silent p.L234L 0.41 TCGA-VQ-A91K-01 1 155774741 155774741 T G GON4L Missense_Mutation p.E548D 0.33 tolerated(0.09) benign(0.388) TCGA-VQ-A91K-01 1 156013856 156013856 C T UBQLN4 Silent p.S353S 0.58 TCGA-VQ-A91K-01 1 156146470 156146470 C - SEMA4A Frame_Shift_Del p.R658Gfs*4 0.18 TCGA-VQ-A91K-01 1 156621388 156621388 C T BCAN Missense_Mutation p.R402C 0.37 deleterious(0) probably_damaging(0.998) TCGA-VQ-A91K-01 1 156643255 156643255 T C NES Missense_Mutation p.S325G 0.23 tolerated(0.48) benign(0.01) TCGA-VQ-A91K-01 1 157666211 157666211 G A FCRL3 Intron 0.38 TCGA-VQ-A91K-01 1 158226789 158226789 C T CD1A Missense_Mutation p.A273V 0.25 tolerated(0.09) benign(0.115) TCGA-VQ-A91K-01 1 158606546 158606546 T G SPTA1 Missense_Mutation p.K1732T 0.33 deleterious(0) probably_damaging(0.998) TCGA-VQ-A91K-01 1 158670133 158670133 G A OR6K2 Missense_Mutation p.H104Y 0.30 deleterious(0.03) probably_damaging(0.999) TCGA-VQ-A91K-01 1 159021488 159021488 C G IFI16 Missense_Mutation p.T506S 0.34 tolerated(0.81) benign(0.113) TCGA-VQ-A91K-01 1 159828018 159828018 G A VSIG8 Missense_Mutation p.R98C 0.33 deleterious(0.01) possibly_damaging(0.873) TCGA-VQ-A91K-01 1 160136494 160136494 C T ATP1A4 Silent p.A408A 0.32 TCGA-VQ-A91K-01 1 160146329 160146329 A G ATP1A4 Missense_Mutation p.R843G 0.30 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91K-01 1 160340832 160340832 C T NHLH1 Missense_Mutation p.T104M 0.44 deleterious(0) probably_damaging(0.981) TCGA-VQ-A91K-01 1 160771594 160771594 A G LY9 Intron 0.42 TCGA-VQ-A91K-01 1 161088075 161088075 A T NIT1 Intron 0.33 TCGA-VQ-A91K-01 1 161089404 161089404 T C NIT1 Splice_Site p.X153_splice 0.29 TCGA-VQ-A91K-01 1 161277083 161277083 G A MPZ Missense_Mutation p.R67C 0.29 tolerated(0.05) possibly_damaging(0.734) TCGA-VQ-A91K-01 1 16456012 16456012 C T EPHA2 Silent p.E914E 0.38 TCGA-VQ-A91K-01 1 165386378 165386378 C T RXRG Silent p.T174T 0.31 TCGA-VQ-A91K-01 1 1670493 1670493 G A SLC35E2 Missense_Mutation p.A109V 0.27 deleterious(0.03) possibly_damaging(0.713) TCGA-VQ-A91K-01 1 167815256 167815256 G A ADCY10 Missense_Mutation p.R895C 0.38 tolerated(0.08) benign(0.188) TCGA-VQ-A91K-01 1 16802950 16802950 C T CROCCP3 RNA 0.09 TCGA-VQ-A91K-01 1 169525978 169525978 G A F5 Silent p.I286I 0.32 TCGA-VQ-A91K-01 1 17250935 17250935 C T CROCC Silent p.R104R 0.19 TCGA-VQ-A91K-01 1 17313329 17313329 G A ATP13A2 Missense_Mutation p.A1069V 0.16 tolerated(0.36) benign(0.18) TCGA-VQ-A91K-01 1 176905449 176905449 C T ASTN1 Missense_Mutation p.R812Q 0.30 tolerated(0.2) benign(0.006) TCGA-VQ-A91K-01 1 178426862 178426862 G A RASAL2 Missense_Mutation p.S812N 0.43 tolerated(0.51) benign(0.001) TCGA-VQ-A91K-01 1 179013085 179013085 C T FAM20B Missense_Mutation p.R35W 0.34 deleterious(0) possibly_damaging(0.799) TCGA-VQ-A91K-01 1 180012201 180012201 T C CEP350 Missense_Mutation p.L1458S 0.45 probably_damaging(0.947) TCGA-VQ-A91K-01 1 180914584 180914584 G A KIAA1614 Missense_Mutation p.G1145S 0.37 deleterious(0) probably_damaging(1) TCGA-VQ-A91K-01 1 181705529 181705529 G A CACNA1E Missense_Mutation p.M1127I 0.26 tolerated(1) benign(0.019) TCGA-VQ-A91K-01 1 183072488 183072488 G C LAMC1 Silent p.V148V 0.41 TCGA-VQ-A91K-01 1 183498596 183498596 C T SMG7 Silent p.H257H 0.36 TCGA-VQ-A91K-01 1 186915849 186915849 T - PLA2G4A Frame_Shift_Del p.F373Lfs*17 0.28 TCGA-VQ-A91K-01 1 19062155 19062155 G A PAX7 Silent p.A395A 0.27 TCGA-VQ-A91K-01 1 193070289 193070289 C T GLRX2 Silent p.A56A 0.24 TCGA-VQ-A91K-01 1 1961050 1961050 G A GABRD Missense_Mutation p.R303Q 0.33 deleterious(0) probably_damaging(0.998) TCGA-VQ-A91K-01 1 196711183 196711183 T A CFH Splice_Site p.X1045_splice 0.26 TCGA-VQ-A91K-01 1 196759348 196759348 A C CFHR3 Silent p.R263R 0.47 TCGA-VQ-A91K-01 1 197073182 197073182 G C ASPM Missense_Mutation p.I1733M 0.11 deleterious(0) probably_damaging(0.976) TCGA-VQ-A91K-01 1 198676014 198676014 G A PTPRC Silent p.A279A 0.34 TCGA-VQ-A91K-01 1 200973970 200973970 G A KIF21B Missense_Mutation p.A275V 0.43 deleterious(0) benign(0.378) TCGA-VQ-A91K-01 1 201031160 201031160 C T CACNA1S Missense_Mutation p.E989K 0.37 tolerated(0.83) benign(0.009) TCGA-VQ-A91K-01 1 201618024 201618024 C G NAV1 Silent p.V76V 0.42 TCGA-VQ-A91K-01 1 203316599 203316600 - C FMOD Frame_Shift_Ins p.A267Gfs*31 0.25 TCGA-VQ-A91K-01 1 204228411 204228411 C - PLEKHA6 Frame_Shift_Del p.V328Yfs*172 0.21 TCGA-VQ-A91K-01 1 205022286 205022286 G A CNTN2 5'UTR 0.79 TCGA-VQ-A91K-01 1 205034940 205034940 C T CNTN2 Silent p.T573T 0.24 TCGA-VQ-A91K-01 1 207195366 207195367 - G C1orf116 Frame_Shift_Ins p.V584Cfs*4 0.20 TCGA-VQ-A91K-01 1 207263775 207263775 C T C4BPB Missense_Mutation p.L61F 0.26 tolerated(0.43) benign(0.023) TCGA-VQ-A91K-01 1 210001374 210001374 G C DIEXF 5'UTR 0.29 TCGA-VQ-A91K-01 1 21031096 21031096 G T KIF17 Missense_Mutation p.L323I 0.45 deleterious(0.01) probably_damaging(0.983) TCGA-VQ-A91K-01 1 211545734 211545734 G - TRAF5 Frame_Shift_Del p.S457Hfs*26 0.28 TCGA-VQ-A91K-01 1 214170754 214170754 C T PROX1 Silent p.V292V 0.23 TCGA-VQ-A91K-01 1 215256579 215256579 C T KCNK2 5'UTR 0.39 TCGA-VQ-A91K-01 1 21582525 21582525 G A ECE1 Missense_Mutation p.T312M 0.34 tolerated(0.06) probably_damaging(1) TCGA-VQ-A91K-01 1 216680305 216680306 - A ESRRG Frame_Shift_Ins p.L463Ffs*38 0.24 TCGA-VQ-A91K-01 1 218520021 218520021 T - TGFB2 5'UTR 0.33 TCGA-VQ-A91K-01 1 220269535 220269535 C T IARS2 Silent p.N119N 0.39 TCGA-VQ-A91K-01 1 223176589 223176589 C T DISP1 Missense_Mutation p.A617V 0.34 tolerated(0.06) possibly_damaging(0.818) TCGA-VQ-A91K-01 1 224001956 224001956 G - TP53BP2 Frame_Shift_Del p.P92Lfs*6 0.26 TCGA-VQ-A91K-01 1 22446719 22446719 G A WNT4 Missense_Mutation p.R294C 0.35 deleterious(0) probably_damaging(0.995) TCGA-VQ-A91K-01 1 226352491 226352491 T - ACBD3 Frame_Shift_Del p.R190Gfs*43 0.38 TCGA-VQ-A91K-01 1 226564979 226564979 G A PARP1 Missense_Mutation p.R591C 0.31 deleterious(0) probably_damaging(1) TCGA-VQ-A91K-01 1 22816801 22816801 G A ZBTB40 Silent p.S120S 0.33 TCGA-VQ-A91K-01 1 2283133 2283133 C T MORN1 Intron 0.33 TCGA-VQ-A91K-01 1 228362824 228362824 C T IBA57 Silent p.G227G 0.31 TCGA-VQ-A91K-01 1 228471337 228471337 C A OBSCN Silent p.A3386A 0.37 TCGA-VQ-A91K-01 1 22915433 22915433 C T EPHA8 Missense_Mutation p.P350L 0.29 tolerated(0.05) benign(0.015) TCGA-VQ-A91K-01 1 22915627 22915627 G A EPHA8 Missense_Mutation p.V415I 0.39 tolerated(0.07) benign(0.007) TCGA-VQ-A91K-01 1 229460857 229460857 A - CCSAP 3'UTR 0.33 TCGA-VQ-A91K-01 1 229667402 229667403 CT - ABCB10 Frame_Shift_Del p.E472Afs*6 0.24 TCGA-VQ-A91K-01 1 231131713 231131713 A T ARV1 Missense_Mutation p.N219I 0.30 deleterious(0) probably_damaging(0.971) TCGA-VQ-A91K-01 1 233225802 233225805 CTTA - PCNXL2 Splice_Site p.X1359_splice 0.39 TCGA-VQ-A91K-01 1 233297043 233297043 C T PCNXL2 Missense_Mutation p.A1114T 0.39 deleterious(0.01) possibly_damaging(0.895) TCGA-VQ-A91K-01 1 234742830 234742830 T A IRF2BP2 3'UTR 0.37 TCGA-VQ-A91K-01 1 234742955 234742955 C A IRF2BP2 Missense_Mutation p.W564C 0.40 deleterious(0) probably_damaging(0.977) TCGA-VQ-A91K-01 1 235602113 235602113 G A TBCE Silent p.E382E 0.40 TCGA-VQ-A91K-01 1 235715234 235715234 A - GNG4 3'UTR 0.29 TCGA-VQ-A91K-01 1 235922440 235922440 C T LYST Missense_Mutation p.R2238Q 0.33 tolerated_low_confidence(0.14) benign(0.003) TCGA-VQ-A91K-01 1 236175227 236175227 G A NID1 Missense_Mutation p.P841S 0.27 tolerated(0.09) benign(0.311) TCGA-VQ-A91K-01 1 237890484 237890484 T C RYR2 Missense_Mutation p.L3608S 0.32 probably_damaging(0.973) TCGA-VQ-A91K-01 1 245583047 245583047 G A KIF26B Missense_Mutation p.R389Q 0.31 deleterious(0) unknown(0) TCGA-VQ-A91K-01 1 247013070 247013070 G A AHCTF1 Nonsense_Mutation p.Q2089* 0.29 TCGA-VQ-A91K-01 1 249111054 249111054 G A SH3BP5L Silent p.S71S 0.13 TCGA-VQ-A91K-01 1 26371689 26371689 A G SLC30A2 Missense_Mutation p.W24R 0.14 tolerated(0.44) benign(0.008) TCGA-VQ-A91K-01 1 26448983 26448983 C T PDIK1L Missense_Mutation p.A314V 0.33 tolerated(0.7) benign(0.015) TCGA-VQ-A91K-01 1 27097751 27097751 C - ARID1A Frame_Shift_Del p.P1115Qfs*46 0.33 TCGA-VQ-A91K-01 1 27240025 27240025 G A NR0B2 Missense_Mutation p.P136L 0.46 tolerated(0.09) benign(0.033) TCGA-VQ-A91K-01 1 28206240 28206240 G A THEMIS2 Silent p.L107L 0.37 TCGA-VQ-A91K-01 1 28598854 28598854 G T SESN2 Missense_Mutation p.Q138H 0.38 tolerated(0.25) benign(0.037) TCGA-VQ-A91K-01 1 28858429 28858429 T C RCC1 Missense_Mutation p.V94A 0.27 deleterious(0) probably_damaging(0.961) TCGA-VQ-A91K-01 1 32138061 32138061 C A COL16A1 Missense_Mutation p.G1021C 0.29 unknown(0) TCGA-VQ-A91K-01 1 32221741 32221741 A C BAI2 Missense_Mutation p.S233A 0.31 tolerated(0.7) benign(0.005) TCGA-VQ-A91K-01 1 33585906 33585906 C T ADC 3'UTR 0.38 TCGA-VQ-A91K-01 1 33794610 33794610 G A PHC2 Silent p.R761R 0.26 TCGA-VQ-A91K-01 1 34554619 34554619 C T CSMD2 Silent p.S81S 0.44 TCGA-VQ-A91K-01 1 35484912 35484912 A - ZMYM6 Intron 0.36 TCGA-VQ-A91K-01 1 35650014 35650015 - A SFPQ 3'UTR 0.46 TCGA-VQ-A91K-01 1 36474304 36474304 A C AGO3 Missense_Mutation p.E269D 0.37 deleterious(0.02) benign(0.195) TCGA-VQ-A91K-01 1 3670700 3670700 G A CCDC27 Missense_Mutation p.A113T 0.38 tolerated(0.69) benign(0) TCGA-VQ-A91K-01 1 36884646 36884646 C T OSCP1 Silent p.A323A 0.40 TCGA-VQ-A91K-01 1 37270637 37270637 G A GRIK3 Missense_Mutation p.A839V 0.24 deleterious(0) benign(0.391) TCGA-VQ-A91K-01 1 37325558 37325558 G A GRIK3 Missense_Mutation p.R283W 0.28 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91K-01 1 3768945 3768945 G A CEP104 Silent p.V9V 0.31 TCGA-VQ-A91K-01 1 3800235 3800235 G A DFFB Missense_Mutation p.C316Y 0.41 deleterious(0) probably_damaging(1) TCGA-VQ-A91K-01 1 38331499 38331508 AGGCTCTGGA - INPP5B Frame_Shift_Del p.P814Sfs*38 0.16 TCGA-VQ-A91K-01 1 39838213 39838213 T C MACF1 Silent p.T2324T 0.32 TCGA-VQ-A91K-01 1 40236055 40236055 G A OXCT2 Silent p.D291D 0.40 TCGA-VQ-A91K-01 1 41285646 41285646 G A KCNQ4 Missense_Mutation p.A312T 0.32 deleterious(0.04) probably_damaging(0.986) TCGA-VQ-A91K-01 1 41303357 41303357 G - KCNQ4 Frame_Shift_Del p.D593Tfs*23 0.19 TCGA-VQ-A91K-01 1 43909362 43909362 C A SZT2 Missense_Mutation p.P2850H 0.09 tolerated(0.06) probably_damaging(0.996) TCGA-VQ-A91K-01 1 44019259 44019259 G A PTPRF Missense_Mutation p.R63H 0.29 deleterious(0.01) possibly_damaging(0.834) TCGA-VQ-A91K-01 1 44466601 44466601 C T SLC6A9 Intron 0.44 TCGA-VQ-A91K-01 1 46521495 46521495 G A PIK3R3 Silent p.L305L 0.32 TCGA-VQ-A91K-01 1 48865222 48865222 G A SPATA6 Missense_Mutation p.P194L 0.31 deleterious(0.03) probably_damaging(0.996) TCGA-VQ-A91K-01 1 50659560 50659560 A G ELAVL4 Missense_Mutation p.T177A 0.37 deleterious(0.04) benign(0.172) TCGA-VQ-A91K-01 1 52937666 52937666 G A ZCCHC11 Nonsense_Mutation p.R946* 0.14 TCGA-VQ-A91K-01 1 55317850 55317850 T C DHCR24 3'UTR 0.30 TCGA-VQ-A91K-01 1 55637269 55637269 C T USP24 Missense_Mutation p.G262E 0.29 tolerated(0.18) possibly_damaging(0.462) TCGA-VQ-A91K-01 1 59248460 59248461 - G JUN Frame_Shift_Ins p.T95Hfs*12 0.28 TCGA-VQ-A91K-01 1 5934614 5934614 G - NPHP4 Frame_Shift_Del p.Q1050Sfs*33 0.21 TCGA-VQ-A91K-01 1 6257785 6257785 T - RPL22 Frame_Shift_Del p.K15Rfs*5 0.33 TCGA-VQ-A91K-01 1 74506894 74506894 T C LRRIQ3 Intron 0.40 TCGA-VQ-A91K-01 1 75172661 75172661 A G CRYZ Silent p.G250G 0.33 TCGA-VQ-A91K-01 1 77759519 77759519 C A AK5 Silent p.R97R 0.07 TCGA-VQ-A91K-01 1 7998254 7998254 T - TNFRSF9 Frame_Shift_Del p.G116Vfs*33 0.25 TCGA-VQ-A91K-01 1 82450946 82450946 C T LPHN2 Missense_Mutation p.R1122C 0.15 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91K-01 1 84971835 84971835 G A GNG5 5'UTR 0.36 TCGA-VQ-A91K-01 1 85742042 85742042 G T BCL10 5'UTR 0.31 TCGA-VQ-A91K-01 1 86826141 86826142 - T ODF2L Frame_Shift_Ins p.Q408Tfs*6 0.47 TCGA-VQ-A91K-01 1 87040305 87040305 C T CLCA4 Missense_Mutation p.T517M 0.37 deleterious(0) probably_damaging(0.997) TCGA-VQ-A91K-01 1 89271809 89271809 G C PKN2 Intron 0.47 TCGA-VQ-A91K-01 1 9067433 9067433 G A SLC2A7 Silent p.P376P 0.31 TCGA-VQ-A91K-01 1 91182472 91182472 G A BARHL2 Missense_Mutation p.P94L 0.40 tolerated_low_confidence(0.15) unknown(0) TCGA-VQ-A91K-01 1 92185739 92185739 C T TGFBR3 Missense_Mutation p.R375Q 0.37 tolerated(0.63) benign(0.002) TCGA-VQ-A91K-01 1 9324203 9324203 C T H6PD Nonsense_Mutation p.R551* 0.45 TCGA-VQ-A91K-01 1 93303108 93303108 T C RPL5 Missense_Mutation p.M208T 0.37 deleterious(0.03) benign(0.029) TCGA-VQ-A91K-01 20 1285876 1285876 G A SNPH Silent p.P221P 0.41 TCGA-VQ-A91K-01 20 13260483 13260483 G - ISM1 Frame_Shift_Del p.W196Gfs*80 0.15 TCGA-VQ-A91K-01 20 1424343 1424343 G A NSFL1C 3'UTR 0.26 TCGA-VQ-A91K-01 20 21494130 21494130 G A NKX2-2 Missense_Mutation p.P60S 0.28 tolerated(0.1) benign(0.1) TCGA-VQ-A91K-01 20 21494144 21494144 G A NKX2-2 Missense_Mutation p.A55V 0.43 tolerated(0.31) benign(0.017) TCGA-VQ-A91K-01 20 2688641 2688641 C T EBF4 Silent p.L151L 0.37 TCGA-VQ-A91K-01 20 30438432 30438432 C T DUSP15 Silent p.P158P 0.36 TCGA-VQ-A91K-01 20 31035486 31035486 C T C20orf112 Silent p.R408R 0.37 TCGA-VQ-A91K-01 20 3128920 3128921 - A FASTKD5 Frame_Shift_Ins p.S266Ffs*2 0.23 TCGA-VQ-A91K-01 20 31805278 31805278 C T BPIFA3 5'UTR 0.30 TCGA-VQ-A91K-01 20 33706493 33706493 G A EDEM2 Missense_Mutation p.R382C 0.28 deleterious(0) probably_damaging(0.967) TCGA-VQ-A91K-01 20 33999750 33999750 C T UQCC1 Missense_Mutation p.R6Q 0.27 deleterious_low_confidence(0.02) benign(0.137) TCGA-VQ-A91K-01 20 34091732 34091732 A C CEP250 Silent p.G1845G 0.35 TCGA-VQ-A91K-01 20 36775167 36775167 G A TGM2 Missense_Mutation p.R271C 0.27 deleterious(0) possibly_damaging(0.661) TCGA-VQ-A91K-01 20 37383616 37383616 G A ACTR5 Silent p.R264R 0.14 TCGA-VQ-A91K-01 20 40050519 40050519 T C CHD6 Missense_Mutation p.I1586V 0.36 tolerated(0.23) benign(0.002) TCGA-VQ-A91K-01 20 40118655 40118656 - T CHD6 Frame_Shift_Ins p.N481Kfs*6 0.23 TCGA-VQ-A91K-01 20 40980777 40980777 G T PTPRT Missense_Mutation p.T570K 0.40 deleterious(0) probably_damaging(0.969) TCGA-VQ-A91K-01 20 41100975 41100975 G A PTPRT Nonsense_Mutation p.R461* 0.42 TCGA-VQ-A91K-01 20 43057087 43057087 C T HNF4A Silent p.N414N 0.41 TCGA-VQ-A91K-01 20 43629926 43629926 C T STK4 Missense_Mutation p.T360M 0.41 deleterious(0.02) benign(0.068) TCGA-VQ-A91K-01 20 44277323 44277323 C A WFDC11 3'UTR 0.41 TCGA-VQ-A91K-01 20 44587962 44587962 G A ZNF335 Missense_Mutation p.R711C 0.33 deleterious(0.02) probably_damaging(0.943) TCGA-VQ-A91K-01 20 44683592 44683592 C T SLC12A5 Missense_Mutation p.T929M 0.29 deleterious(0) probably_damaging(0.978) TCGA-VQ-A91K-01 20 44839106 44839106 G A CDH22 Missense_Mutation p.R376C 0.60 deleterious(0.01) possibly_damaging(0.807) TCGA-VQ-A91K-01 20 45702872 45702872 G A EYA2 Missense_Mutation p.V187I 0.35 tolerated(0.11) benign(0.3) TCGA-VQ-A91K-01 20 46318931 46318931 G - SULF2 Frame_Shift_Del p.H226Tfs*43 0.17 TCGA-VQ-A91K-01 20 48700763 48700763 A G UBE2V1 Missense_Mutation p.L90P 0.12 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91K-01 20 49224981 49224981 C T FAM65C Missense_Mutation p.V297M 0.30 tolerated(0.1) benign(0.397) TCGA-VQ-A91K-01 20 49367088 49367088 A - PARD6B 3'UTR 0.52 TCGA-VQ-A91K-01 20 50140102 50140102 G A NFATC2 Silent p.L226L 0.43 TCGA-VQ-A91K-01 20 50776795 50776795 G A ZFP64 Silent p.Y210Y 0.11 TCGA-VQ-A91K-01 20 57392726 57392726 G - MIR296 RNA 0.19 TCGA-VQ-A91K-01 20 57576578 57576578 G A CTSZ Silent p.Y143Y 0.28 TCGA-VQ-A91K-01 20 57829870 57829870 C T ZNF831 3'UTR 0.44 TCGA-VQ-A91K-01 20 6022279 6022281 CCT - LRRN4 In_Frame_Del p.E537del 0.33 TCGA-VQ-A91K-01 20 61511585 61511585 G - DIDO1 Frame_Shift_Del p.P1908Lfs*111 0.25 TCGA-VQ-A91K-01 20 61594049 61594049 G A SLC17A9 Missense_Mutation p.G191S 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A91K-01 20 61637552 61637552 G A BHLHE23 Missense_Mutation p.A176V 0.33 deleterious(0.03) benign(0.01) TCGA-VQ-A91K-01 20 61637723 61637723 G A BHLHE23 Missense_Mutation p.A119V 0.36 deleterious(0) probably_damaging(0.997) TCGA-VQ-A91K-01 20 62192549 62192549 T C HELZ2 Silent p.A2344A 0.24 TCGA-VQ-A91K-01 20 62493433 62493433 C T ABHD16B Silent p.N180N 0.41 TCGA-VQ-A91K-01 20 62701151 62701151 G A TCEA2 Missense_Mutation p.R165H 0.26 tolerated(0.32) benign(0.001) TCGA-VQ-A91K-01 20 62705333 62705333 G A RGS19 Missense_Mutation p.T176M 0.31 tolerated(0.19) possibly_damaging(0.828) TCGA-VQ-A91K-01 20 8696941 8696941 C T PLCB1 Silent p.Y427Y 0.15 TCGA-VQ-A91K-01 21 30411810 30411810 G A USP16 Missense_Mutation p.R291Q 0.44 deleterious(0) probably_damaging(0.939) TCGA-VQ-A91K-01 21 34799292 34799292 T - IFNGR2 Frame_Shift_Del p.C174Vfs*29 0.39 TCGA-VQ-A91K-01 21 35190621 35190622 - A ITSN1 Frame_Shift_Ins p.D929Rfs*7 0.37 TCGA-VQ-A91K-01 21 35467380 35467380 G A SLC5A3 5'UTR 0.60 TCGA-VQ-A91K-01 21 41505836 41505836 G A DSCAM Silent p.T1169T 0.58 TCGA-VQ-A91K-01 21 45547982 45547982 C T PWP2 Silent p.N770N 0.48 TCGA-VQ-A91K-01 21 45786702 45786702 G A TRPM2 Silent p.G163G 0.33 TCGA-VQ-A91K-01 21 47773952 47773952 C T PCNT Silent p.H577H 0.28 TCGA-VQ-A91K-01 22 17071784 17071784 G T CCT8L2 Missense_Mutation p.L553I 0.42 tolerated_low_confidence(0.21) benign(0.005) TCGA-VQ-A91K-01 22 17072813 17072813 C T CCT8L2 Missense_Mutation p.G210R 0.34 deleterious(0) probably_damaging(1) TCGA-VQ-A91K-01 22 17073437 17073437 C T CCT8L2 Missense_Mutation p.D2N 0.33 tolerated(0.28) benign(0.074) TCGA-VQ-A91K-01 22 17579705 17579705 G A IL17RA Silent p.L117L 0.37 TCGA-VQ-A91K-01 22 19026469 19026469 G - DGCR2 Frame_Shift_Del p.P521Lfs*128 0.27 TCGA-VQ-A91K-01 22 19481886 19481886 C T CDC45 Nonsense_Mutation p.R175* 0.20 TCGA-VQ-A91K-01 22 19789689 19789689 C T GNB1L Silent p.S189S 0.25 TCGA-VQ-A91K-01 22 20130522 20130522 C - ZDHHC8 Frame_Shift_Del p.T459Rfs*177 0.27 TCGA-VQ-A91K-01 22 20812202 20812202 A G KLHL22 Missense_Mutation p.Y400H 0.32 tolerated(0.77) benign(0.011) TCGA-VQ-A91K-01 22 21083922 21083922 G A PI4KA Silent p.L1496L 0.40 TCGA-VQ-A91K-01 22 22550422 22550422 G A IGLV6-57 Silent p.P33P 0.30 TCGA-VQ-A91K-01 22 23135228 23135228 C T IGLV2-11 Silent p.S30S 0.39 TCGA-VQ-A91K-01 22 24085756 24085756 G T ZNF70 3'UTR 0.67 TCGA-VQ-A91K-01 22 25627704 25627704 T G CRYBB2 Missense_Mutation p.W195G 0.23 deleterious(0) possibly_damaging(0.843) TCGA-VQ-A91K-01 22 25627745 25627745 T A CRYBB2 3'UTR 0.23 TCGA-VQ-A91K-01 22 25627817 25627817 A G CRYBB2 3'UTR 0.15 TCGA-VQ-A91K-01 22 26114290 26114290 G A ADRBK2 Missense_Mutation p.R578H 0.45 deleterious(0.01) probably_damaging(0.914) TCGA-VQ-A91K-01 22 26222373 26222373 C T MYO18B Intron 0.50 TCGA-VQ-A91K-01 22 28195368 28195368 C T MN1 Silent p.T388T 0.27 TCGA-VQ-A91K-01 22 29445339 29445339 C T ZNRF3 Silent p.H390H 0.29 TCGA-VQ-A91K-01 22 30228238 30228238 G A ASCC2 Missense_Mutation p.A26V 0.26 deleterious(0) probably_damaging(1) TCGA-VQ-A91K-01 22 30822735 30822735 G T MTFP1 Missense_Mutation p.R33L 0.28 deleterious(0) probably_damaging(0.966) TCGA-VQ-A91K-01 22 31644655 31644655 T A LIMK2 5'UTR 0.31 TCGA-VQ-A91K-01 22 32589132 32589132 A T RFPL2 Missense_Mutation p.S105T 0.27 tolerated(0.41) benign(0.012) TCGA-VQ-A91K-01 22 32937658 32937658 G A SYN3 Silent p.S272S 0.50 TCGA-VQ-A91K-01 22 33700306 33700306 G A LARGE Missense_Mutation p.R547C 0.37 deleterious(0) probably_damaging(1) TCGA-VQ-A91K-01 22 36901989 36901989 G T FOXRED2 Missense_Mutation p.H161N 0.45 deleterious(0.01) benign(0.038) TCGA-VQ-A91K-01 22 37420650 37420650 C A MPST Missense_Mutation p.L152I 0.32 deleterious(0.02) possibly_damaging(0.67) TCGA-VQ-A91K-01 22 37769104 37769104 G - ELFN2 3'UTR 0.30 TCGA-VQ-A91K-01 22 38119699 38119699 G A TRIOBP Missense_Mutation p.R379K 0.30 tolerated_low_confidence(0.26) possibly_damaging(0.745) TCGA-VQ-A91K-01 22 38122169 38122169 C A TRIOBP Silent p.S1202S 0.35 TCGA-VQ-A91K-01 22 39627762 39627762 G A PDGFB Silent p.S107S 0.35 TCGA-VQ-A91K-01 22 40815092 40815092 C T MKL1 Silent p.T450T 0.25 TCGA-VQ-A91K-01 22 41257115 41257115 T - DNAJB7 Frame_Shift_Del p.K295Rfs*25 0.61 TCGA-VQ-A91K-01 22 41573304 41573304 A T EP300 Silent p.P1863P 0.37 TCGA-VQ-A91K-01 22 43287124 43287124 G A PACSIN2 Silent p.S94S 0.22 TCGA-VQ-A91K-01 22 43579062 43579062 G A TTLL12 Missense_Mutation p.P91S 0.35 tolerated(0.2) benign(0.009) TCGA-VQ-A91K-01 22 45278941 45278941 G C PHF21B 3'UTR 0.29 TCGA-VQ-A91K-01 22 46671226 46671226 T C TTC38 Silent p.H149H 0.37 TCGA-VQ-A91K-01 22 50217210 50217210 G A BRD1 Silent p.P252P 0.42 TCGA-VQ-A91K-01 22 50307070 50307070 C T ALG12 Silent p.S86S 0.25 TCGA-VQ-A91K-01 22 50313848 50313848 C T CRELD2 Missense_Mutation p.T123I 0.35 deleterious(0) probably_damaging(0.969) TCGA-VQ-A91K-01 22 50615953 50615953 C T PANX2 Missense_Mutation p.A271V 0.42 tolerated(0.36) benign(0.055) TCGA-VQ-A91K-01 22 50682721 50682721 C T TUBGCP6 Silent p.Q56Q 0.41 TCGA-VQ-A91K-01 22 50699624 50699624 C T MAPK12 Missense_Mutation p.R76H 0.60 deleterious(0.01) probably_damaging(0.986) TCGA-VQ-A91K-01 22 50719859 50719859 G A PLXNB2 Missense_Mutation p.L1198F 0.33 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91K-01 22 51048151 51048151 G T MAPK8IP2 Intron 0.36 TCGA-VQ-A91K-01 2 100015329 100015332 TGTT - EIF5B Frame_Shift_Del p.F1172Efs*41 0.37 TCGA-VQ-A91K-01 2 100019385 100019385 T C REV1 Silent p.L1117L 0.05 TCGA-VQ-A91K-01 2 103334978 103334978 G - MFSD9 Frame_Shift_Del p.S443Afs*6 0.26 TCGA-VQ-A91K-01 2 105472991 105472991 C T POU3F3 Silent p.A341A 0.37 TCGA-VQ-A91K-01 2 105473387 105473387 G A POU3F3 Silent p.T473T 0.36 TCGA-VQ-A91K-01 2 106694450 106694450 C T C2orf40 3'UTR 0.42 TCGA-VQ-A91K-01 2 113496573 113496573 G A CKAP2L Missense_Mutation p.R689C 0.23 deleterious(0) probably_damaging(1) TCGA-VQ-A91K-01 2 114356357 114356357 G A WASH2P RNA 0.26 TCGA-VQ-A91K-01 2 114715149 114715149 C T ACTR3 3'UTR 0.57 TCGA-VQ-A91K-01 2 11780474 11780474 G A GREB1 Missense_Mutation p.R1915H 0.31 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91K-01 2 125367413 125367413 C T CNTNAP5 Nonsense_Mutation p.Q597* 0.28 TCGA-VQ-A91K-01 2 125547681 125547681 C T CNTNAP5 Silent p.C984C 0.19 TCGA-VQ-A91K-01 2 128342466 128342466 C T MYO7B Silent p.G556G 0.25 TCGA-VQ-A91K-01 2 131103485 131103487 CTC - IMP4 In_Frame_Del p.S193del 0.64 TCGA-VQ-A91K-01 2 132241554 132241554 C G MZT2A 3'UTR 0.48 TCGA-VQ-A91K-01 2 133540804 133540804 T C NCKAP5 Missense_Mutation p.K1194E 0.35 tolerated(1) benign(0.117) TCGA-VQ-A91K-01 2 135625073 135625073 T A ACMSD Intron 0.32 TCGA-VQ-A91K-01 2 136399227 136399227 C T R3HDM1 Silent p.V447V 0.33 TCGA-VQ-A91K-01 2 136567100 136567100 T C LCT Silent p.P939P 0.17 TCGA-VQ-A91K-01 2 136682014 136682014 G A DARS Nonsense_Mutation p.R207* 0.14 TCGA-VQ-A91K-01 2 137928328 137928328 C T THSD7B Missense_Mutation p.R515C 0.40 deleterious(0) possibly_damaging(0.835) TCGA-VQ-A91K-01 2 139428707 139428707 T - NXPH2 Frame_Shift_Del p.T194Qfs*87 0.33 TCGA-VQ-A91K-01 2 139428816 139428816 T C NXPH2 Silent p.S157S 0.27 TCGA-VQ-A91K-01 2 141083405 141083405 T G LRP1B Missense_Mutation p.D4089A 0.22 possibly_damaging(0.539) TCGA-VQ-A91K-01 2 1488621 1488621 G A TPO Missense_Mutation p.R531H 0.39 deleterious(0.01) benign(0.015) TCGA-VQ-A91K-01 2 152544177 152544178 - G NEB Frame_Shift_Ins p.L829Pfs*21 0.24 TCGA-VQ-A91K-01 2 158156128 158156128 A G GALNT5 Missense_Mutation p.D689G 0.38 deleterious(0) probably_damaging(1) TCGA-VQ-A91K-01 2 158178151 158178151 G A ERMN Nonsense_Mutation p.R176* 0.33 TCGA-VQ-A91K-01 2 160006935 160006935 G A TANC1 Missense_Mutation p.A184T 0.37 tolerated(0.26) benign(0.037) TCGA-VQ-A91K-01 2 162696318 162696318 A G SLC4A10 Silent p.V99V 0.19 TCGA-VQ-A91K-01 2 164466612 164466612 C T FIGN Missense_Mutation p.R577H 0.35 tolerated(0.11) probably_damaging(0.998) TCGA-VQ-A91K-01 2 1652818 1652818 C T PXDN Missense_Mutation p.A912T 0.22 deleterious(0) probably_damaging(0.996) TCGA-VQ-A91K-01 2 167168058 167168058 A G SCN9A Missense_Mutation p.M70T 0.22 deleterious(0) benign(0.391) TCGA-VQ-A91K-01 2 168114770 168114770 T C XIRP2 3'UTR 0.36 TCGA-VQ-A91K-01 2 175213713 175213713 T - CIR1 Frame_Shift_Del p.I289Yfs*51 0.43 TCGA-VQ-A91K-01 2 175337750 175337751 - T GPR155 Frame_Shift_Ins p.I268Nfs*19 0.33 TCGA-VQ-A91K-01 2 175622345 175622346 - T CHRNA1 Frame_Shift_Ins p.I123Nfs*17 0.29 TCGA-VQ-A91K-01 2 179393849 179393849 T - TTN Frame_Shift_Del p.A35544Pfs*2 0.20 TCGA-VQ-A91K-01 2 179433317 179433317 C T TTN Missense_Mutation p.D25848N 0.20 TCGA-VQ-A91K-01 2 179438185 179438185 G A TTN Missense_Mutation p.P24225L 0.37 TCGA-VQ-A91K-01 2 179616135 179616135 A G TTN Intron 0.26 TCGA-VQ-A91K-01 2 179638309 179638309 G - TTN Frame_Shift_Del p.Q2492Rfs*4 0.26 TCGA-VQ-A91K-01 2 182786931 182786931 C T SSFA2 Missense_Mutation p.T1156M 0.34 tolerated(0.06) probably_damaging(0.999) TCGA-VQ-A91K-01 2 182850837 182850837 C A PPP1R1C 5'UTR 0.46 TCGA-VQ-A91K-01 2 185803770 185803770 A - ZNF804A 3'UTR 0.26 TCGA-VQ-A91K-01 2 187373354 187373354 C T ZC3H15 Missense_Mutation p.T392M 0.19 tolerated(0.1) benign(0.118) TCGA-VQ-A91K-01 2 18765937 18765937 C T NT5C1B Missense_Mutation p.R249H 0.47 tolerated_low_confidence(0.07) benign(0.021) TCGA-VQ-A91K-01 2 188361606 188361606 A T TFPI Splice_Site p.X107_splice 0.22 TCGA-VQ-A91K-01 2 189851806 189851806 T A COL3A1 Missense_Mutation p.S157T 0.30 unknown(0) TCGA-VQ-A91K-01 2 189943291 189943291 G T COL5A2 Missense_Mutation p.P337Q 0.35 probably_damaging(0.998) TCGA-VQ-A91K-01 2 190440024 190440024 G A SLC40A1 Missense_Mutation p.A45V 0.25 deleterious(0) probably_damaging(0.996) TCGA-VQ-A91K-01 2 198351792 198351803 CCACCTCCCATT - HSPD1 In_Frame_Del p.G567_G570del 0.16 TCGA-VQ-A91K-01 2 198950739 198950739 G A PLCL1 Missense_Mutation p.G833D 0.33 tolerated(0.07) probably_damaging(0.947) TCGA-VQ-A91K-01 2 201515794 201515794 C T AOX1 Missense_Mutation p.A982V 0.29 tolerated(0.09) benign(0.033) TCGA-VQ-A91K-01 2 201683505 201683505 A - BZW1 Frame_Shift_Del p.N317Tfs*11 0.29 TCGA-VQ-A91K-01 2 20200211 20200211 T - MATN3 Frame_Shift_Del p.T387Hfs*10 0.28 TCGA-VQ-A91K-01 2 204058623 204058623 T - NBEAL1 Frame_Shift_Del p.F2315Lfs*2 0.25 TCGA-VQ-A91K-01 2 204801547 204801547 G T ICOS Missense_Mutation p.G4C 0.23 tolerated(0.06) benign(0.394) TCGA-VQ-A91K-01 2 207170131 207170131 T C ZDBF2 Silent p.G293G 0.50 TCGA-VQ-A91K-01 2 207172526 207172526 A - ZDBF2 Frame_Shift_Del p.I1094* 0.22 TCGA-VQ-A91K-01 2 208478035 208478035 C G METTL21A Missense_Mutation p.S131T 0.34 tolerated(0.51) benign(0.099) TCGA-VQ-A91K-01 2 208795725 208795725 A C PLEKHM3 Missense_Mutation p.L604R 0.31 tolerated(0.05) possibly_damaging(0.722) TCGA-VQ-A91K-01 2 215843156 215843156 T - ABCA12 Frame_Shift_Del p.N1671Ifs*4 0.32 TCGA-VQ-A91K-01 2 219494327 219494327 C A PLCD4 Missense_Mutation p.L354M 0.32 deleterious(0.01) probably_damaging(1) TCGA-VQ-A91K-01 2 219563541 219563541 C A STK36 Missense_Mutation p.L1092M 0.28 tolerated(0.08) possibly_damaging(0.775) TCGA-VQ-A91K-01 2 220500118 220500118 C T SLC4A3 Silent p.S651S 0.36 TCGA-VQ-A91K-01 2 222290668 222290668 A - EPHA4 3'UTR 0.30 TCGA-VQ-A91K-01 2 222294689 222294689 C T EPHA4 Silent p.T893T 0.31 TCGA-VQ-A91K-01 2 225338957 225338957 G A CUL3 3'UTR 0.40 TCGA-VQ-A91K-01 2 227953487 227953487 G - COL4A4 Frame_Shift_Del p.P502Lfs*151 0.27 TCGA-VQ-A91K-01 2 230911063 230911063 C T SLC16A14 Missense_Mutation p.C260Y 0.32 deleterious(0.04) benign(0.325) TCGA-VQ-A91K-01 2 231314343 231314343 A - SP100 Frame_Shift_Del p.D220Ifs*10 0.24 TCGA-VQ-A91K-01 2 232319862 232319862 C A NCL 3'UTR 0.40 TCGA-VQ-A91K-01 2 233715094 233715094 G A GIGYF2 Missense_Mutation p.M1290I 0.36 unknown(0) TCGA-VQ-A91K-01 2 234171874 234171874 G A ATG16L1 Missense_Mutation p.R103H 0.39 deleterious(0) probably_damaging(0.97) TCGA-VQ-A91K-01 2 234652412 234652412 C T UGT1A10 Intron 0.45 TCGA-VQ-A91K-01 2 235950420 235950420 G T SH3BP4 Missense_Mutation p.S336I 0.40 deleterious(0.01) benign(0.427) TCGA-VQ-A91K-01 2 238249741 238249741 G A COL6A3 Silent p.F2606F 0.32 TCGA-VQ-A91K-01 2 238727072 238727072 A - RBM44 Frame_Shift_Del p.K506Nfs*27 0.28 TCGA-VQ-A91K-01 2 239147782 239147782 C A HES6 Missense_Mutation p.V121F 0.45 deleterious(0.04) probably_damaging(1) TCGA-VQ-A91K-01 2 241078584 241078584 C T OTOS 3'UTR 0.38 TCGA-VQ-A91K-01 2 241439436 241439436 C T ANKMY1 Silent p.R826R 0.31 TCGA-VQ-A91K-01 2 242149015 242149015 C T ANO7 Missense_Mutation p.R496C 0.40 deleterious(0) possibly_damaging(0.55) TCGA-VQ-A91K-01 2 242432775 242432775 G A FARP2 Missense_Mutation p.G988D 0.37 tolerated(0.19) possibly_damaging(0.772) TCGA-VQ-A91K-01 2 242611640 242611640 C T ATG4B Silent p.F381F 0.40 TCGA-VQ-A91K-01 2 242815482 242815482 C - CXXC11 3'UTR 0.31 TCGA-VQ-A91K-01 2 24426567 24426567 C T ITSN2 Silent p.L1674L 0.35 TCGA-VQ-A91K-01 2 27892118 27892118 A G SLC4A1AP Silent p.L403L 0.25 TCGA-VQ-A91K-01 2 27898497 27898497 C T SLC4A1AP Missense_Mutation p.R482C 0.24 deleterious(0.01) benign(0.441) TCGA-VQ-A91K-01 2 28812421 28812421 G A PLB1 Silent p.S640S 0.45 TCGA-VQ-A91K-01 2 30454488 30454488 G A LBH 5'UTR 0.33 TCGA-VQ-A91K-01 2 31360999 31360999 C - GALNT14 5'UTR 0.28 TCGA-VQ-A91K-01 2 32093504 32093504 C T MEMO1 Missense_Mutation p.A274T 0.28 tolerated(0.19) benign(0.203) TCGA-VQ-A91K-01 2 37032729 37032729 C T VIT Silent p.I437I 0.39 TCGA-VQ-A91K-01 2 37414553 37414553 T - SULT6B1 Frame_Shift_Del p.K48Sfs*21 0.28 TCGA-VQ-A91K-01 2 39535127 39535127 A - MAP4K3 Frame_Shift_Del p.L359Wfs*31 0.17 TCGA-VQ-A91K-01 2 44503036 44503036 G T SLC3A1 Missense_Mutation p.G121V 0.32 deleterious(0.04) possibly_damaging(0.641) TCGA-VQ-A91K-01 2 44933448 44933448 G - CAMKMT Frame_Shift_Del p.G155Vfs*3 0.28 TCGA-VQ-A91K-01 2 46583391 46583391 G A EPAS1 Missense_Mutation p.D107N 0.38 deleterious(0) probably_damaging(1) TCGA-VQ-A91K-01 2 46770164 46770164 C A RHOQ 5'UTR 0.29 TCGA-VQ-A91K-01 2 51255183 51255183 C T NRXN1 Missense_Mutation p.D77N 0.38 deleterious(0) probably_damaging(0.991) TCGA-VQ-A91K-01 2 55549674 55549674 A G CCDC88A Missense_Mutation p.V1050A 0.37 deleterious(0) possibly_damaging(0.749) TCGA-VQ-A91K-01 2 60688969 60688969 G - BCL11A Frame_Shift_Del p.L360Sfs*61 0.35 TCGA-VQ-A91K-01 2 69569347 69569347 C T GFPT1 Silent p.E380E 0.08 TCGA-VQ-A91K-01 2 70931478 70931478 G A ADD2 Silent p.H99H 0.10 TCGA-VQ-A91K-01 2 71043773 71043773 A G CLEC4F Missense_Mutation p.L247S 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-VQ-A91K-01 2 71377015 71377015 C T MPHOSPH10 Missense_Mutation p.A639V 0.34 tolerated(0.12) benign(0.367) TCGA-VQ-A91K-01 2 73678982 73678982 T C ALMS1 Silent p.S1775S 0.42 TCGA-VQ-A91K-01 2 74741874 74741874 G A TLX2 5'UTR 0.64 TCGA-VQ-A91K-01 2 85826671 85826671 A G TMEM150A Missense_Mutation p.I184T 0.29 deleterious(0.01) benign(0.438) TCGA-VQ-A91K-01 2 86308799 86308799 A G POLR1A Missense_Mutation p.M283T 0.38 deleterious(0.04) benign(0.021) TCGA-VQ-A91K-01 2 88387588 88387588 C T SMYD1 Silent p.F174F 0.60 TCGA-VQ-A91K-01 2 88409944 88409944 C T SMYD1 Silent p.R462R 0.37 TCGA-VQ-A91K-01 2 8916972 8916972 G A KIDINS220 Silent p.S918S 0.39 TCGA-VQ-A91K-01 2 89292361 89292361 G A IGKV1-8 Missense_Mutation p.L13F 0.36 tolerated(0.07) possibly_damaging(0.529) TCGA-VQ-A91K-01 2 95540687 95540687 C T TEKT4 Missense_Mutation p.R294C 0.31 deleterious(0) possibly_damaging(0.901) TCGA-VQ-A91K-01 2 95815375 95815375 C T ZNF514 Silent p.E285E 0.34 TCGA-VQ-A91K-01 2 96789846 96789846 C T ASTL Missense_Mutation p.E347K 0.31 tolerated_low_confidence(0.24) benign(0.012) TCGA-VQ-A91K-01 2 96860723 96860723 C G STARD7 Silent p.V174V 0.45 TCGA-VQ-A91K-01 2 96944713 96944713 A G SNRNP200 Silent p.Y1719Y 0.40 TCGA-VQ-A91K-01 2 97261289 97261289 G T KANSL3 3'UTR 0.54 TCGA-VQ-A91K-01 3 100365430 100365430 T C GPR128 Silent p.F376F 0.47 TCGA-VQ-A91K-01 3 101572493 101572493 A G NFKBIZ Missense_Mutation p.S375G 0.28 tolerated_low_confidence(0.12) benign(0.003) TCGA-VQ-A91K-01 3 10320676 10320676 G A TATDN2 Silent p.L751L 0.36 TCGA-VQ-A91K-01 3 10417188 10417188 C T ATP2B2 Missense_Mutation p.V448M 0.40 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91K-01 3 107491504 107491504 G A BBX Missense_Mutation p.M312I 0.45 tolerated(0.35) benign(0.002) TCGA-VQ-A91K-01 3 11058943 11058943 G A SLC6A1 Missense_Mutation p.E16K 0.41 tolerated(0.17) benign(0.014) TCGA-VQ-A91K-01 3 112647930 112647930 G A CD200R1 Intron 0.40 TCGA-VQ-A91K-01 3 114058003 114058003 G - ZBTB20 Frame_Shift_Del p.P692Lfs*43 0.32 TCGA-VQ-A91K-01 3 115805359 115805359 C T LSAMP Missense_Mutation p.R67H 0.21 deleterious(0) probably_damaging(0.993) TCGA-VQ-A91K-01 3 119463017 119463017 C T MAATS1 Missense_Mutation p.R626W 0.30 deleterious(0.01) probably_damaging(0.939) TCGA-VQ-A91K-01 3 121037366 121037366 C T STXBP5L Missense_Mutation p.R743C 0.40 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91K-01 3 121413742 121413743 - T GOLGB1 Frame_Shift_Ins p.N1876Kfs*13 0.29 TCGA-VQ-A91K-01 3 122420126 122420126 G A PARP14 Missense_Mutation p.E909K 0.33 deleterious(0.03) benign(0.13) TCGA-VQ-A91K-01 3 122433242 122433242 T - PARP14 Frame_Shift_Del p.Y1323Tfs*25 0.17 TCGA-VQ-A91K-01 3 122645436 122645436 G A SEMA5B Silent p.T367T 0.21 TCGA-VQ-A91K-01 3 123022991 123022991 C T ADCY5 Missense_Mutation p.V828M 0.37 deleterious(0.02) possibly_damaging(0.629) TCGA-VQ-A91K-01 3 123044255 123044255 C T ADCY5 Missense_Mutation p.G668R 0.23 tolerated(0.44) possibly_damaging(0.83) TCGA-VQ-A91K-01 3 124103708 124103708 C T KALRN Missense_Mutation p.A594V 0.30 tolerated(0.12) unknown(0) TCGA-VQ-A91K-01 3 125652459 125652459 C T ALG1L Missense_Mutation p.R20H 0.42 tolerated(0.27) benign(0) TCGA-VQ-A91K-01 3 126185158 126185158 C T ZXDC Silent p.A427A 0.34 TCGA-VQ-A91K-01 3 127339946 127339946 G A MCM2 Missense_Mutation p.D827N 0.15 deleterious(0.04) benign(0.188) TCGA-VQ-A91K-01 3 12857365 12857365 G T CAND2 Splice_Site p.X434_splice 0.08 TCGA-VQ-A91K-01 3 12859289 12859289 G - CAND2 Frame_Shift_Del p.V955Wfs*12 0.23 TCGA-VQ-A91K-01 3 129007718 129007718 A G HMCES Missense_Mutation p.I69V 0.27 tolerated(1) benign(0.006) TCGA-VQ-A91K-01 3 129289944 129289944 G A PLXND1 Missense_Mutation p.T1180M 0.32 deleterious(0.03) probably_damaging(0.962) TCGA-VQ-A91K-01 3 132203464 132203464 C T DNAJC13 Missense_Mutation p.P1072L 0.34 deleterious(0) probably_damaging(0.996) TCGA-VQ-A91K-01 3 132320065 132320065 G A ACKR4 Missense_Mutation p.C275Y 0.25 deleterious(0) probably_damaging(1) TCGA-VQ-A91K-01 3 134079174 134079174 G A AMOTL2 Nonsense_Mutation p.R553* 0.45 TCGA-VQ-A91K-01 3 13438890 13438890 G - NUP210 Frame_Shift_Del p.L135Wfs*3 0.20 TCGA-VQ-A91K-01 3 137880738 137880739 - CAT DBR1 In_Frame_Ins p.D542dup 0.23 TCGA-VQ-A91K-01 3 138762896 138762896 G A PRR23C Silent p.Y189Y 0.19 TCGA-VQ-A91K-01 3 142422814 142422814 C A PLS1 Silent p.T492T 0.18 TCGA-VQ-A91K-01 3 142499837 142499837 G A TRPC1 Missense_Mutation p.R309H 0.37 deleterious(0) probably_damaging(0.996) TCGA-VQ-A91K-01 3 142741497 142741497 T A U2SURP Missense_Mutation p.N337K 0.37 tolerated(0.32) benign(0.065) TCGA-VQ-A91K-01 3 147108994 147108994 C T ZIC4 Missense_Mutation p.R293Q 0.31 deleterious(0.01) probably_damaging(0.963) TCGA-VQ-A91K-01 3 147113665 147113665 A G ZIC4 Missense_Mutation p.L271P 0.09 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91K-01 3 148459965 148459965 C T AGTR1 3'UTR 0.08 TCGA-VQ-A91K-01 3 150293480 150293480 C T EIF2A Silent p.N476N 0.50 TCGA-VQ-A91K-01 3 15084406 15084406 T - NR2C2 Frame_Shift_Del p.F582Lfs*10 0.32 TCGA-VQ-A91K-01 3 161063834 161063834 A G SPTSSB 3'UTR 0.44 TCGA-VQ-A91K-01 3 164758812 164758812 C T SI Missense_Mutation p.R692H 0.35 deleterious(0) probably_damaging(0.965) TCGA-VQ-A91K-01 3 168849251 168849251 G T MECOM Missense_Mutation p.D69E 0.42 tolerated(1) benign(0.015) TCGA-VQ-A91K-01 3 170716886 170716886 C T SLC2A2 Missense_Mutation p.A380T 0.36 tolerated(0.14) benign(0.215) TCGA-VQ-A91K-01 3 17448111 17448111 A - TBC1D5 Intron 0.40 TCGA-VQ-A91K-01 3 178916931 178916931 C T PIK3CA Silent p.G106G 0.33 TCGA-VQ-A91K-01 3 178928079 178928079 G A PIK3CA Missense_Mutation p.E453K 0.36 tolerated(0.06) possibly_damaging(0.801) TCGA-VQ-A91K-01 3 178952090 178952090 G C PIK3CA Missense_Mutation p.G1049R 0.41 tolerated(0.09) possibly_damaging(0.487) TCGA-VQ-A91K-01 3 179525497 179525497 G A PEX5L Silent p.N547N 0.33 TCGA-VQ-A91K-01 3 184008629 184008629 G A ECE2 Silent p.T723T 0.37 TCGA-VQ-A91K-01 3 184039672 184039672 C - EIF4G1 Frame_Shift_Del p.T443Pfs*86 0.31 TCGA-VQ-A91K-01 3 184042082 184042084 GAT - EIF4G1 In_Frame_Del p.D865del 0.38 TCGA-VQ-A91K-01 3 186792017 186792017 C T ST6GAL1 Missense_Mutation p.P292L 0.35 benign(0.078) TCGA-VQ-A91K-01 3 193171907 193171907 G A ATP13A4 Silent p.H670H 0.34 TCGA-VQ-A91K-01 3 195515971 195515971 G A MUC4 Missense_Mutation p.T827M 0.34 unknown(0) TCGA-VQ-A91K-01 3 195935260 195935260 C T ZDHHC19 Missense_Mutation p.A194T 0.34 tolerated(0.77) benign(0.236) TCGA-VQ-A91K-01 3 197403879 197403879 G A KIAA0226 Silent p.G841G 0.28 TCGA-VQ-A91K-01 3 197423846 197423846 T C KIAA0226 Missense_Mutation p.S446G 0.36 tolerated(0.14) benign(0.016) TCGA-VQ-A91K-01 3 20194018 20194018 T - KAT2B 3'UTR 0.40 TCGA-VQ-A91K-01 3 20225494 20225494 T - SGOL1 Frame_Shift_Del p.K9Sfs*10 0.22 TCGA-VQ-A91K-01 3 21792515 21792515 C T ZNF385D 5'UTR 0.55 TCGA-VQ-A91K-01 3 27346447 27346447 C T NEK10 Silent p.L273L 0.30 TCGA-VQ-A91K-01 3 32200561 32200561 G A GPD1L Missense_Mutation p.R271Q 0.26 deleterious(0) probably_damaging(0.973) TCGA-VQ-A91K-01 3 32201101 32201101 G T GPD1L Missense_Mutation p.K298N 0.37 deleterious(0.01) possibly_damaging(0.879) TCGA-VQ-A91K-01 3 33879719 33879719 G A PDCD6IP Missense_Mutation p.V366M 0.30 tolerated(0.26) benign(0.038) TCGA-VQ-A91K-01 3 37034639 37034639 G A EPM2AIP1 5'UTR 0.24 TCGA-VQ-A91K-01 3 38349190 38349190 G A SLC22A14 Missense_Mutation p.A252T 0.34 tolerated(0.64) benign(0.017) TCGA-VQ-A91K-01 3 38640508 38640508 T G SCN5A Missense_Mutation p.M642L 0.32 tolerated(0.76) benign(0.001) TCGA-VQ-A91K-01 3 38739721 38739721 C G SCN10A Missense_Mutation p.D1664H 0.33 deleterious(0) probably_damaging(0.998) TCGA-VQ-A91K-01 3 39104645 39104646 CT - WDR48 Frame_Shift_Del p.S52Yfs*24 0.29 TCGA-VQ-A91K-01 3 39230931 39230931 G A XIRP1 Silent p.A2A 0.33 TCGA-VQ-A91K-01 3 40570820 40570820 C T ZNF621 Missense_Mutation p.T12I 0.32 deleterious(0) possibly_damaging(0.475) TCGA-VQ-A91K-01 3 41268763 41268763 A - CTNNB1 Frame_Shift_Del p.K335Nfs*10 0.27 TCGA-VQ-A91K-01 3 41278082 41278082 C A CTNNB1 Missense_Mutation p.T653K 0.30 deleterious(0) possibly_damaging(0.861) TCGA-VQ-A91K-01 3 44492012 44492012 C - ZNF445 Frame_Shift_Del p.W250Gfs*13 0.31 TCGA-VQ-A91K-01 3 46939349 46939349 C T PTH1R Silent p.R106R 0.40 TCGA-VQ-A91K-01 3 46939924 46939924 G A PTH1R Silent p.A200A 0.38 TCGA-VQ-A91K-01 3 46944826 46944826 C T PTH1R Missense_Mutation p.R488C 0.32 deleterious(0) probably_damaging(0.998) TCGA-VQ-A91K-01 3 4722294 4722294 C T ITPR1 Nonsense_Mutation p.R994* 0.21 TCGA-VQ-A91K-01 3 47318847 47318847 T - KIF9 Frame_Shift_Del p.V7Ffs*17 0.31 TCGA-VQ-A91K-01 3 47618854 47618854 C T CSPG5 Missense_Mutation p.R221H 0.26 tolerated_low_confidence(0.18) benign(0.042) TCGA-VQ-A91K-01 3 48573820 48573820 G A PFKFB4 Missense_Mutation p.R237C 0.34 probably_damaging(1) TCGA-VQ-A91K-01 3 49200315 49200315 G A CCDC71 Missense_Mutation p.R443W 0.35 tolerated(0.15) unknown(0) TCGA-VQ-A91K-01 3 49699952 49699952 C A BSN Silent p.G3558G 0.32 TCGA-VQ-A91K-01 3 49756509 49756509 G A AMIGO3 Silent p.D130D 0.40 TCGA-VQ-A91K-01 3 49881322 49881323 AG - TRAIP Frame_Shift_Del p.L107Afs*41 0.29 TCGA-VQ-A91K-01 3 50330042 50330042 C A IFRD2 5'Flank 0.47 TCGA-VQ-A91K-01 3 50403287 50403287 C T CACNA2D2 Missense_Mutation p.V964I 0.25 tolerated(1) benign(0.003) TCGA-VQ-A91K-01 3 51417604 51417604 C - DOCK3 Frame_Shift_Del p.P1852Qfs*45 0.26 TCGA-VQ-A91K-01 3 51431353 51431353 G - RBM15B Frame_Shift_Del p.S844Pfs*27 0.27 TCGA-VQ-A91K-01 3 51431458 51431460 AGA - RBM15B In_Frame_Del p.E879del 0.40 TCGA-VQ-A91K-01 3 52257950 52257950 G A TLR9 Silent p.L282L 0.38 TCGA-VQ-A91K-01 3 5229577 5229577 C A AC026202.1 Missense_Mutation p.G136W 0.40 benign(0) TCGA-VQ-A91K-01 3 52428609 52428609 C A DNAH1 Silent p.S3585S 0.25 TCGA-VQ-A91K-01 3 52521417 52521417 G A NISCH Missense_Mutation p.E637K 0.39 tolerated(0.83) possibly_damaging(0.453) TCGA-VQ-A91K-01 3 52822044 52822044 G A ITIH1 Missense_Mutation p.S656N 0.41 tolerated(0.35) benign(0.013) TCGA-VQ-A91K-01 3 62518661 62518661 G A CADPS Nonsense_Mutation p.R726* 0.35 TCGA-VQ-A91K-01 3 66467568 66467568 G A LRIG1 Missense_Mutation p.P163L 0.39 tolerated(1) benign(0) TCGA-VQ-A91K-01 3 69298397 69298397 T C FRMD4B Silent p.E187E 0.33 TCGA-VQ-A91K-01 3 74414789 74414789 C T CNTN3 Nonsense_Mutation p.W337* 0.31 TCGA-VQ-A91K-01 3 7456819 7456819 A - GRM7 Frame_Shift_Del p.E384Kfs*28 0.27 TCGA-VQ-A91K-01 3 9034689 9034689 C A SRGAP3 Missense_Mutation p.S820I 0.45 deleterious(0.05) benign(0.386) TCGA-VQ-A91K-01 3 9798889 9798890 - TC OGG1 Intron 0.31 TCGA-VQ-A91K-01 3 98002069 98002069 G T OR5H2 Missense_Mutation p.G113V 0.23 tolerated(0.29) benign(0.001) TCGA-VQ-A91K-01 3 98300277 98300277 G T CPOX Silent p.I417I 0.32 TCGA-VQ-A91K-01 3 9982697 9982697 T C CRELD1 Silent p.H208H 0.43 TCGA-VQ-A91K-01 4 104640357 104640357 C T TACR3 Missense_Mutation p.R159H 0.33 tolerated(0.05) probably_damaging(0.987) TCGA-VQ-A91K-01 4 106156936 106156936 G - TET2 Frame_Shift_Del p.L615Sfs*24 0.24 TCGA-VQ-A91K-01 4 109088868 109088868 G A LEF1 Missense_Mutation p.A19V 0.39 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91K-01 4 1231923 1231923 C - CTBP1 Intron 0.30 TCGA-VQ-A91K-01 4 126238051 126238051 C T FAT4 Missense_Mutation p.S162L 0.26 benign(0.327) TCGA-VQ-A91K-01 4 126238632 126238632 C T FAT4 Missense_Mutation p.R356C 0.28 probably_damaging(0.988) TCGA-VQ-A91K-01 4 128804454 128804455 AG - PLK4 Frame_Shift_Del p.R56Sfs*4 0.29 TCGA-VQ-A91K-01 4 134072359 134072359 C T PCDH10 Missense_Mutation p.A355V 0.28 tolerated(0.21) benign(0.069) TCGA-VQ-A91K-01 4 145567783 145567783 C - HHIP 5'UTR 0.27 TCGA-VQ-A91K-01 4 146041093 146041093 T - ABCE1 Frame_Shift_Del p.L313Wfs*10 0.41 TCGA-VQ-A91K-01 4 146807067 146807067 A G ZNF827 Missense_Mutation p.S504P 0.26 tolerated(0.07) benign(0.429) TCGA-VQ-A91K-01 4 147561113 147561113 A G POU4F2 Missense_Mutation p.H128R 0.35 deleterious_low_confidence(0.02) possibly_damaging(0.84) TCGA-VQ-A91K-01 4 147561447 147561447 C T POU4F2 Silent p.H239H 0.35 TCGA-VQ-A91K-01 4 148453785 148453785 A G EDNRA Missense_Mutation p.M226V 0.31 tolerated(0.1) benign(0.034) TCGA-VQ-A91K-01 4 152024919 152024919 C T RPS3A Intron 0.40 TCGA-VQ-A91K-01 4 153896153 153896153 C T FHDC1 Silent p.S570S 0.38 TCGA-VQ-A91K-01 4 154636802 154636802 T C RNF175 Missense_Mutation p.S215G 0.21 tolerated(0.26) benign(0.002) TCGA-VQ-A91K-01 4 155158059 155158059 T - DCHS2 Frame_Shift_Del p.N2127Tfs*64 0.27 TCGA-VQ-A91K-01 4 155254149 155254149 C T DCHS2 Missense_Mutation p.V572I 0.27 tolerated(0.13) benign(0.361) TCGA-VQ-A91K-01 4 155530912 155530912 C T FGG Missense_Mutation p.C179Y 0.33 deleterious(0) probably_damaging(1) TCGA-VQ-A91K-01 4 158142156 158142157 AA C GRIA2 5'UTR 0.09 TCGA-VQ-A91K-01 4 1643032 1643032 G A FAM53A Silent p.I395I 0.35 TCGA-VQ-A91K-01 4 166218794 166218794 G T KLHL2 Missense_Mutation p.D234Y 0.43 deleterious(0.01) probably_damaging(0.987) TCGA-VQ-A91K-01 4 170912660 170912660 C T MFAP3L Missense_Mutation p.E367K 0.35 deleterious_low_confidence(0.04) benign(0.057) TCGA-VQ-A91K-01 4 1730307 1730308 - C TACC3 Frame_Shift_Ins p.M396Hfs*17 0.35 TCGA-VQ-A91K-01 4 174242844 174242847 AATG - GALNT7 Frame_Shift_Del p.M651Ifs*14 0.47 TCGA-VQ-A91K-01 4 175688174 175688174 T C GLRA3 Silent p.P69P 0.45 TCGA-VQ-A91K-01 4 177608524 177608524 T - VEGFC Frame_Shift_Del p.N321Tfs*33 0.26 TCGA-VQ-A91K-01 4 185309839 185309839 A - IRF2 3'UTR 0.33 TCGA-VQ-A91K-01 4 187510259 187510259 G A FAT1 Silent p.N4418N 0.36 TCGA-VQ-A91K-01 4 20568926 20568926 C A SLIT2 Missense_Mutation p.L923I 0.33 deleterious(0.01) possibly_damaging(0.892) TCGA-VQ-A91K-01 4 22749537 22749538 - T GBA3 Frame_Shift_Ins p.A305Cfs*29 0.26 TCGA-VQ-A91K-01 4 24556366 24556368 AAG - DHX15 In_Frame_Del p.L354del 0.32 TCGA-VQ-A91K-01 4 3123116 3123116 G A HTT Silent p.E410E 0.42 TCGA-VQ-A91K-01 4 39459236 39459236 A G RPL9 Silent p.H76H 0.59 TCGA-VQ-A91K-01 4 44638084 44638084 C T YIPF7 Silent p.Q69Q 0.27 TCGA-VQ-A91K-01 4 47584049 47584051 CTC - ATP10D In_Frame_Del p.L1242del 0.34 TCGA-VQ-A91K-01 4 48537802 48537802 G A FRYL Missense_Mutation p.H2146Y 0.31 deleterious(0.04) probably_damaging(0.997) TCGA-VQ-A91K-01 4 4864630 4864630 C T MSX1 Silent p.R224R 0.39 TCGA-VQ-A91K-01 4 57907077 57907077 G - IGFBP7 Frame_Shift_Del p.K167Rfs*13 0.36 TCGA-VQ-A91K-01 4 6380161 6380161 C T PPP2R2C Missense_Mutation p.A103T 0.37 tolerated(0.06) benign(0.422) TCGA-VQ-A91K-01 4 6588779 6588779 G A MAN2B2 Missense_Mutation p.V150I 0.31 tolerated(0.19) possibly_damaging(0.678) TCGA-VQ-A91K-01 4 66217223 66217223 G T EPHA5 Missense_Mutation p.H798N 0.31 deleterious(0) probably_damaging(0.986) TCGA-VQ-A91K-01 4 68529650 68529650 G A UBA6 Nonsense_Mutation p.Q305* 0.26 TCGA-VQ-A91K-01 4 69696517 69696517 G A UGT2B10 Missense_Mutation p.V503M 0.39 tolerated(0.05) benign(0.393) TCGA-VQ-A91K-01 4 71024421 71024421 G A C4orf40 Missense_Mutation p.G151E 0.10 tolerated(1) unknown(0) TCGA-VQ-A91K-01 4 71024425 71024425 C A C4orf40 Silent p.A152A 0.07 TCGA-VQ-A91K-01 4 71201926 71201926 C T CABS1 Silent p.P390P 0.25 TCGA-VQ-A91K-01 4 71500203 71500204 - A ENAM Frame_Shift_Ins p.P133Afs*13 0.28 TCGA-VQ-A91K-01 4 71555164 71555164 C T UTP3 Missense_Mutation p.P257L 0.38 deleterious(0.01) benign(0.219) TCGA-VQ-A91K-01 4 73148881 73148881 G A ADAMTS3 Missense_Mutation p.P1197L 0.34 tolerated_low_confidence(0.15) benign(0.003) TCGA-VQ-A91K-01 4 7787960 7787960 C T AFAP1 Silent p.T497T 0.37 TCGA-VQ-A91K-01 4 78082677 78082677 C T CCNG2 Missense_Mutation p.A191V 0.25 deleterious(0) possibly_damaging(0.596) TCGA-VQ-A91K-01 4 7870409 7870409 G A AFAP1 Silent p.T55T 0.30 TCGA-VQ-A91K-01 4 79434660 79434660 C T FRAS1 Silent p.H3376H 0.28 TCGA-VQ-A91K-01 4 80327854 80327854 C T GK2 Missense_Mutation p.A501T 0.35 tolerated(0.4) benign(0.006) TCGA-VQ-A91K-01 4 82065415 82065415 C T PRKG2 Silent p.L408L 0.29 TCGA-VQ-A91K-01 4 85504492 85504492 C A CDS1 5'UTR 0.30 TCGA-VQ-A91K-01 4 88995983 88995983 C T PKD2 Missense_Mutation p.R848W 0.43 deleterious(0) possibly_damaging(0.877) TCGA-VQ-A91K-01 4 90168895 90168895 G A GPRIN3 3'UTR 0.31 TCGA-VQ-A91K-01 4 96469936 96469936 G A UNC5C Silent p.L25L 0.49 TCGA-VQ-A91K-01 5 100147698 100147698 C T ST8SIA4 Silent p.A311A 0.28 TCGA-VQ-A91K-01 5 1065517 1065517 C T SLC12A7 Missense_Mutation p.G773D 0.30 deleterious(0) possibly_damaging(0.601) TCGA-VQ-A91K-01 5 109125195 109125195 A - MAN2A1 Frame_Shift_Del p.N639Ifs*2 0.31 TCGA-VQ-A91K-01 5 114607084 114607084 T - CCDC112 Frame_Shift_Del p.K386Nfs*12 0.24 TCGA-VQ-A91K-01 5 115177478 115177490 GCAACGTGTCTGT - ATG12 5'UTR 0.52 TCGA-VQ-A91K-01 5 121488697 121488697 A G ZNF474 Missense_Mutation p.R338G 0.36 tolerated(0.3) benign(0) TCGA-VQ-A91K-01 5 127648425 127648425 T C FBN2 Missense_Mutation p.N1594D 0.43 tolerated(0.08) benign(0.281) TCGA-VQ-A91K-01 5 131006193 131006193 C T FNIP1 Missense_Mutation p.R1024H 0.34 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91K-01 5 132431848 132431848 C A HSPA4 Missense_Mutation p.A570E 0.46 tolerated(0.15) possibly_damaging(0.854) TCGA-VQ-A91K-01 5 134364641 134364641 G A PITX1 Missense_Mutation p.S258L 0.50 deleterious(0.02) benign(0.23) TCGA-VQ-A91K-01 5 134369452 134369452 G T PITX1 Silent p.R40R 0.35 TCGA-VQ-A91K-01 5 135587450 135587450 C T TRPC7 Missense_Mutation p.R489H 0.38 deleterious(0.01) benign(0.431) TCGA-VQ-A91K-01 5 136834093 136834093 T C SPOCK1 Missense_Mutation p.D52G 0.29 tolerated(0.37) benign(0.01) TCGA-VQ-A91K-01 5 137727590 137727590 C T KDM3B Nonsense_Mutation p.Q757* 0.31 TCGA-VQ-A91K-01 5 13792315 13792315 C A DNAH5 Missense_Mutation p.V2746L 0.28 benign(0.299) TCGA-VQ-A91K-01 5 139715477 139715477 G A HBEGF Silent p.I178I 0.30 TCGA-VQ-A91K-01 5 140188385 140188385 G A PCDHA4 Missense_Mutation p.R538H 0.46 deleterious_low_confidence(0.01) benign(0.087) TCGA-VQ-A91K-01 5 140188458 140188458 G A PCDHA4 Silent p.A562A 0.34 TCGA-VQ-A91K-01 5 140209905 140209905 C T PCDHA6 Silent p.S743S 0.09 TCGA-VQ-A91K-01 5 140215613 140215613 G A PCDHA7 Missense_Mutation p.V549M 0.32 deleterious_low_confidence(0.02) possibly_damaging(0.891) TCGA-VQ-A91K-01 5 140229297 140229297 C T PCDHA9 Missense_Mutation p.S406L 0.29 deleterious_low_confidence(0) probably_damaging(1) TCGA-VQ-A91K-01 5 140257248 140257248 C T PCDHA12 Missense_Mutation p.R731W 0.40 deleterious_low_confidence(0.02) benign(0.252) TCGA-VQ-A91K-01 5 140264005 140264005 T C PCDHA13 Missense_Mutation p.Y718H 0.37 deleterious_low_confidence(0.01) benign(0.159) TCGA-VQ-A91K-01 5 140517191 140517191 G A PCDHB5 Silent p.S725S 0.36 TCGA-VQ-A91K-01 5 140553245 140553245 A C PCDHB7 Missense_Mutation p.I277L 0.25 tolerated_low_confidence(0.18) benign(0.067) TCGA-VQ-A91K-01 5 140589871 140589871 C A PCDHB12 Missense_Mutation p.N464K 0.35 deleterious_low_confidence(0) possibly_damaging(0.904) TCGA-VQ-A91K-01 5 140595541 140595541 G A PCDHB13 Missense_Mutation p.G616S 0.28 tolerated_low_confidence(1) benign(0.005) TCGA-VQ-A91K-01 5 140616238 140616238 G A PCDHB18 RNA 0.25 TCGA-VQ-A91K-01 5 140626595 140626595 C T PCDHB15 Silent p.N483N 0.32 TCGA-VQ-A91K-01 5 140719984 140719984 C T PCDHGA2 Silent p.N482N 0.34 TCGA-VQ-A91K-01 5 140729928 140729928 C T PCDHGB1 Missense_Mutation p.T34M 0.31 deleterious(0.01) possibly_damaging(0.775) TCGA-VQ-A91K-01 5 140741505 140741505 C T PCDHGB2 Silent p.N601N 0.25 TCGA-VQ-A91K-01 5 140763495 140763495 T C PCDHGA7 Silent p.N343N 0.26 TCGA-VQ-A91K-01 5 140774369 140774369 C T PCDHGA8 Silent p.A663A 0.46 TCGA-VQ-A91K-01 5 140774670 140774670 C T PCDHGA8 Missense_Mutation p.R764W 0.28 deleterious_low_confidence(0) benign(0.06) TCGA-VQ-A91K-01 5 140865454 140865454 C T PCDHGC4 Silent p.N238N 0.39 TCGA-VQ-A91K-01 5 141027084 141027084 G A FCHSD1 Silent p.L237L 0.52 TCGA-VQ-A91K-01 5 141242804 141242804 C T PCDH1 Missense_Mutation p.S1031N 0.31 tolerated(0.54) benign(0.001) TCGA-VQ-A91K-01 5 141334972 141334972 G - PCDH12 Frame_Shift_Del p.F816Sfs*48 0.31 TCGA-VQ-A91K-01 5 141694697 141694697 C T SPRY4 Missense_Mutation p.V16I 0.44 tolerated_low_confidence(0.19) benign(0) TCGA-VQ-A91K-01 5 14711209 14711209 A - ANKH 3'UTR 0.64 TCGA-VQ-A91K-01 5 147813008 147813008 G A FBXO38 Missense_Mutation p.R817H 0.24 deleterious(0.01) benign(0.356) TCGA-VQ-A91K-01 5 148521564 148521564 C - ABLIM3 5'UTR 0.23 TCGA-VQ-A91K-01 5 148745632 148745632 G A PCYOX1L Missense_Mutation p.V200I 0.27 tolerated(0.1) probably_damaging(0.999) TCGA-VQ-A91K-01 5 149669238 149669238 A G CAMK2A 5'Flank 0.41 TCGA-VQ-A91K-01 5 149677149 149677149 C T ARSI Silent p.P446P 0.21 TCGA-VQ-A91K-01 5 150072471 150072471 G A RBM22 Missense_Mutation p.P373L 0.28 tolerated(0.23) benign(0) TCGA-VQ-A91K-01 5 150076435 150076435 C T RBM22 Missense_Mutation p.R97H 0.27 tolerated(0.05) possibly_damaging(0.843) TCGA-VQ-A91K-01 5 1501590 1501590 C T LPCAT1 Silent p.P88P 0.53 TCGA-VQ-A91K-01 5 150646881 150646881 G A GM2A Missense_Mutation p.E151K 0.41 tolerated(0.11) benign(0.049) TCGA-VQ-A91K-01 5 150901301 150901301 T C FAT2 Missense_Mutation p.Y3618C 0.35 possibly_damaging(0.447) TCGA-VQ-A91K-01 5 150911196 150911196 C T FAT2 Missense_Mutation p.V3255M 0.31 benign(0.067) TCGA-VQ-A91K-01 5 151784749 151784749 A G NMUR2 5'UTR 0.38 TCGA-VQ-A91K-01 5 156746872 156746872 G A CYFIP2 Missense_Mutation p.A461T 0.39 tolerated(0.07) benign(0.017) TCGA-VQ-A91K-01 5 156920180 156920180 G A ADAM19 Missense_Mutation p.A570V 0.33 deleterious(0.03) probably_damaging(0.923) TCGA-VQ-A91K-01 5 156946935 156946935 G A ADAM19 Missense_Mutation p.P171L 0.36 tolerated(0.35) benign(0.001) TCGA-VQ-A91K-01 5 158753741 158753741 G A IL12B Missense_Mutation p.A17V 0.28 tolerated(0.21) benign(0.015) TCGA-VQ-A91K-01 5 162896750 162896750 A - HMMR Frame_Shift_Del p.T128Hfs*17 0.31 TCGA-VQ-A91K-01 5 16673973 16673973 C T MYO10 Missense_Mutation p.E1664K 0.35 deleterious(0.01) probably_damaging(0.995) TCGA-VQ-A91K-01 5 169127051 169127051 A G DOCK2 Missense_Mutation p.D389G 0.34 deleterious(0) possibly_damaging(0.742) TCGA-VQ-A91K-01 5 17354205 17354205 T - CTD-2139B15.2 Intron 0.25 TCGA-VQ-A91K-01 5 175387093 175387093 G T THOC3 Missense_Mutation p.T312K 0.19 deleterious(0.03) possibly_damaging(0.655) TCGA-VQ-A91K-01 5 176638165 176638165 C T NSD1 Missense_Mutation p.T922M 0.39 deleterious_low_confidence(0) probably_damaging(0.964) TCGA-VQ-A91K-01 5 176861921 176861921 C T GRK6 Silent p.N316N 0.41 TCGA-VQ-A91K-01 5 177310710 177310710 C A RP11-423H2.1 RNA 0.41 TCGA-VQ-A91K-01 5 179271216 179271216 T C C5orf45 Missense_Mutation p.E76G 0.30 tolerated(0.17) benign(0.055) TCGA-VQ-A91K-01 5 179743810 179743810 C T GFPT2 Missense_Mutation p.R369Q 0.28 deleterious(0) probably_damaging(0.987) TCGA-VQ-A91K-01 5 179757736 179757736 C T GFPT2 Silent p.T166T 0.31 TCGA-VQ-A91K-01 5 180057235 180057235 G A FLT4 Missense_Mutation p.T168M 0.36 deleterious(0) probably_damaging(0.994) TCGA-VQ-A91K-01 5 180057691 180057691 G A FLT4 Silent p.D88D 0.37 TCGA-VQ-A91K-01 5 23527155 23527155 C G PRDM9 Missense_Mutation p.T653S 0.24 tolerated(0.77) benign(0.001) TCGA-VQ-A91K-01 5 32090083 32090083 G A PDZD2 Missense_Mutation p.A2177T 0.36 tolerated(0.07) benign(0) TCGA-VQ-A91K-01 5 32090112 32090112 A - PDZD2 Frame_Shift_Del p.K2187Nfs*4 0.25 TCGA-VQ-A91K-01 5 32789395 32789395 G T NPR3 3'UTR 0.43 TCGA-VQ-A91K-01 5 34830827 34830827 A C RAI14 Missense_Mutation p.K970T 0.18 deleterious(0) possibly_damaging(0.747) TCGA-VQ-A91K-01 5 3601121 3601121 G A IRX1 Silent p.T470T 0.24 TCGA-VQ-A91K-01 5 36985083 36985083 A - NIPBL Frame_Shift_Del p.K603Sfs*11 0.33 TCGA-VQ-A91K-01 5 37396595 37396595 C A WDR70 Missense_Mutation p.L139I 0.48 tolerated(0.36) benign(0.016) TCGA-VQ-A91K-01 5 41004527 41004528 - T MROH2B Frame_Shift_Ins p.I1372Nfs*26 0.36 TCGA-VQ-A91K-01 5 50091025 50091025 T C PARP8 Missense_Mutation p.L401S 0.31 tolerated_low_confidence(0.11) benign(0.021) TCGA-VQ-A91K-01 5 5240009 5240009 G T ADAMTS16 Nonsense_Mutation p.G832* 0.28 TCGA-VQ-A91K-01 5 5464710 5464710 A G KIAA0947 Missense_Mutation p.M1755V 0.29 deleterious(0) probably_damaging(0.996) TCGA-VQ-A91K-01 5 59983003 59983003 G A DEPDC1B Missense_Mutation p.R34C 0.31 deleterious(0) probably_damaging(0.994) TCGA-VQ-A91K-01 5 61659669 61659669 G A KIF2A Silent p.A470A 0.46 TCGA-VQ-A91K-01 5 64920891 64920891 G T TRAPPC13 Nonsense_Mutation p.E2* 0.42 TCGA-VQ-A91K-01 5 66478638 66478638 C T CD180 3'UTR 0.50 TCGA-VQ-A91K-01 5 68728455 68728455 C - MARVELD2 Frame_Shift_Del p.P430Qfs*9 0.28 TCGA-VQ-A91K-01 5 71492807 71492807 C T MAP1B Missense_Mutation p.P1209S 0.42 probably_damaging(0.998) TCGA-VQ-A91K-01 5 71494598 71494598 G A MAP1B Missense_Mutation p.A1806T 0.31 possibly_damaging(0.784) TCGA-VQ-A91K-01 5 73148496 73148496 C T ARHGEF28 Missense_Mutation p.S590L 0.29 deleterious(0.03) benign(0.001) TCGA-VQ-A91K-01 5 73161830 73161830 T G ARHGEF28 Missense_Mutation p.I715S 0.40 tolerated(0.51) benign(0.011) TCGA-VQ-A91K-01 5 76633140 76633140 G A PDE8B Missense_Mutation p.R266Q 0.35 tolerated(0.07) probably_damaging(0.997) TCGA-VQ-A91K-01 5 76707504 76707504 G A PDE8B Missense_Mutation p.G512S 0.26 tolerated(0.06) probably_damaging(0.969) TCGA-VQ-A91K-01 5 76932693 76932693 G A OTP Missense_Mutation p.R134C 0.43 deleterious(0) probably_damaging(0.998) TCGA-VQ-A91K-01 5 79366959 79366959 G A THBS4 Missense_Mutation p.G559E 0.33 tolerated(0.28) probably_damaging(1) TCGA-VQ-A91K-01 5 86629103 86629103 G A RASA1 Missense_Mutation p.R283H 0.26 deleterious(0.01) probably_damaging(0.984) TCGA-VQ-A91K-01 5 86645136 86645136 C T RASA1 Missense_Mutation p.P403L 0.30 tolerated(0.14) probably_damaging(0.997) TCGA-VQ-A91K-01 5 93076948 93076948 G A POU5F2 Missense_Mutation p.R108W 0.39 deleterious(0) benign(0.097) TCGA-VQ-A91K-01 5 98193914 98193914 C T CHD1 Missense_Mutation p.R1586H 0.34 tolerated_low_confidence(0.11) benign(0.001) TCGA-VQ-A91K-01 6 100896055 100896055 C T SIM1 Missense_Mutation p.D273N 0.32 deleterious(0) possibly_damaging(0.907) TCGA-VQ-A91K-01 6 100988162 100988162 A G ASCC3 Silent p.F1884F 0.34 TCGA-VQ-A91K-01 6 102503432 102503432 A - GRIK2 Frame_Shift_Del p.N849Tfs*14 0.32 TCGA-VQ-A91K-01 6 105298820 105298820 G A HACE1 Silent p.F61F 0.37 TCGA-VQ-A91K-01 6 107070797 107070797 C T RTN4IP1 Missense_Mutation p.V108M 0.24 tolerated(0.17) benign(0.014) TCGA-VQ-A91K-01 6 108232551 108232553 ACA - SEC63 In_Frame_Del p.V208del 0.44 TCGA-VQ-A91K-01 6 109787475 109787475 T G ZBTB24 Missense_Mutation p.D558A 0.33 deleterious(0.01) benign(0.297) TCGA-VQ-A91K-01 6 110736679 110736679 A - DDO Frame_Shift_Del p.F24Sfs*124 0.34 TCGA-VQ-A91K-01 6 114181714 114181714 G A MARCKS Missense_Mutation p.E320K 0.38 deleterious_low_confidence(0.01) unknown(0) TCGA-VQ-A91K-01 6 116560165 116560165 T - NT5DC1 Frame_Shift_Del p.F379Lfs*74 0.27 TCGA-VQ-A91K-01 6 116757020 116757020 T C DSE Silent p.N463N 0.09 TCGA-VQ-A91K-01 6 117710685 117710685 G A ROS1 Silent p.I529I 0.28 TCGA-VQ-A91K-01 6 118228991 118228991 C T SLC35F1 Silent p.S34S 0.40 TCGA-VQ-A91K-01 6 12121187 12121187 G A HIVEP1 Missense_Mutation p.V387I 0.72 tolerated(0.08) possibly_damaging(0.714) TCGA-VQ-A91K-01 6 125232038 125232039 - A RP11-510H23.1 RNA 0.29 TCGA-VQ-A91K-01 6 127610954 127610954 A G ECHDC1 3'UTR 0.35 TCGA-VQ-A91K-01 6 127796879 127796879 G A SOGA3 Silent p.D764D 0.41 TCGA-VQ-A91K-01 6 127835990 127835990 C T SOGA3 Missense_Mutation p.R435H 0.39 tolerated(0.06) probably_damaging(0.999) TCGA-VQ-A91K-01 6 128040853 128040853 C T THEMIS Missense_Mutation p.R664H 0.45 tolerated_low_confidence(0.18) benign(0) TCGA-VQ-A91K-01 6 129649451 129649451 G A LAMA2 Missense_Mutation p.R1402H 0.33 tolerated(0.1) benign(0.022) TCGA-VQ-A91K-01 6 136596765 136596765 C T BCLAF1 Missense_Mutation p.R586Q 0.12 deleterious(0.02) benign(0.417) TCGA-VQ-A91K-01 6 139204010 139204010 T C ECT2L Splice_Site p.X676_splice 0.43 TCGA-VQ-A91K-01 6 143816951 143816951 A G FUCA2 Missense_Mutation p.W433R 0.15 deleterious(0) probably_damaging(0.923) TCGA-VQ-A91K-01 6 146755081 146755081 C T GRM1 Missense_Mutation p.R912C 0.40 deleterious(0) benign(0.117) TCGA-VQ-A91K-01 6 148855005 148855005 C T SASH1 Silent p.D611D 0.35 TCGA-VQ-A91K-01 6 149285691 149285691 C T UST Missense_Mutation p.R225C 0.24 deleterious(0) benign(0.44) TCGA-VQ-A91K-01 6 151151934 151151934 G A PLEKHG1 Missense_Mutation p.V563M 0.34 tolerated(0.15) possibly_damaging(0.66) TCGA-VQ-A91K-01 6 152683323 152683323 C T SYNE1 Silent p.T3427T 0.29 TCGA-VQ-A91K-01 6 157528869 157528869 G A ARID1B Silent p.A2198A 0.32 TCGA-VQ-A91K-01 6 158483179 158483179 G A SYNJ2 Silent p.G370G 0.24 TCGA-VQ-A91K-01 6 158923589 158923589 C T TULP4 Missense_Mutation p.A965V 0.24 deleterious_low_confidence(0.02) benign(0.003) TCGA-VQ-A91K-01 6 158957870 158957870 C T TMEM181 Missense_Mutation p.T131M 0.16 deleterious(0) possibly_damaging(0.572) TCGA-VQ-A91K-01 6 159677654 159677654 C T FNDC1 Missense_Mutation p.P1722L 0.22 deleterious(0) probably_damaging(0.997) TCGA-VQ-A91K-01 6 160188211 160188211 T C ACAT2 Missense_Mutation p.M122T 0.25 deleterious(0) probably_damaging(0.998) TCGA-VQ-A91K-01 6 160202072 160202072 C T TCP1 Missense_Mutation p.G290S 0.45 tolerated(0.05) possibly_damaging(0.581) TCGA-VQ-A91K-01 6 160448246 160448246 C T IGF2R Missense_Mutation p.R226W 0.50 deleterious(0) possibly_damaging(0.831) TCGA-VQ-A91K-01 6 160906847 160906847 G A LPAL2 Splice_Site 0.22 TCGA-VQ-A91K-01 6 161054817 161054817 C T LPA Silent p.S401S 0.19 TCGA-VQ-A91K-01 6 16327056 16327056 T A ATXN1 Missense_Mutation p.S496C 0.84 deleterious(0.01) possibly_damaging(0.497) TCGA-VQ-A91K-01 6 16328275 16328275 C T ATXN1 Silent p.P89P 0.67 TCGA-VQ-A91K-01 6 166574360 166574360 G T T Silent p.P333P 0.53 TCGA-VQ-A91K-01 6 168910712 168910712 C T SMOC2 Missense_Mutation p.R68C 0.45 deleterious(0) probably_damaging(0.949) TCGA-VQ-A91K-01 6 18427822 18427823 AG - RNF144B Frame_Shift_Del p.Q59Lfs*18 0.42 TCGA-VQ-A91K-01 6 24178651 24178653 CTC - DCDC2 In_Frame_Del p.E411del 0.78 TCGA-VQ-A91K-01 6 24653314 24653314 G A TDP2 Missense_Mutation p.A235V 0.68 tolerated(0.09) benign(0.008) TCGA-VQ-A91K-01 6 24653315 24653315 C T TDP2 Missense_Mutation p.A235T 0.68 tolerated(0.2) benign(0.003) TCGA-VQ-A91K-01 6 26124417 26124417 C T HIST1H2AC 5'Flank 0.81 TCGA-VQ-A91K-01 6 26250743 26250743 G T HIST1H3F Missense_Mutation p.P31T 0.80 deleterious_low_confidence(0.02) benign(0) TCGA-VQ-A91K-01 6 26377109 26377109 C T BTN3A2 3'UTR 0.29 TCGA-VQ-A91K-01 6 27835339 27835339 T C HIST1H1B 5'UTR 0.72 TCGA-VQ-A91K-01 6 28227135 28227135 G A NKAPL 5'UTR 0.65 TCGA-VQ-A91K-01 6 29054323 29054323 G T OR2B3 Missense_Mutation p.Q235K 0.64 tolerated(0.47) benign(0.012) TCGA-VQ-A91K-01 6 29430418 29430418 G T OR2H1 Missense_Mutation p.R291M 0.73 deleterious(0) probably_damaging(0.998) TCGA-VQ-A91K-01 6 29640255 29640255 A T ZFP57 3'UTR 0.10 TCGA-VQ-A91K-01 6 31937190 31937190 G A SKIV2L Missense_Mutation p.R1178Q 0.66 tolerated(0.13) possibly_damaging(0.735) TCGA-VQ-A91K-01 6 3225711 3225711 G A TUBB2B Silent p.N204N 0.69 TCGA-VQ-A91K-01 6 33173033 33173033 C A HSD17B8 Silent p.S102S 0.39 TCGA-VQ-A91K-01 6 33381187 33381187 G T PHF1 Missense_Mutation p.R147M 0.35 deleterious(0) probably_damaging(0.92) TCGA-VQ-A91K-01 6 33608297 33608297 C T ITPR3 Silent p.A42A 0.37 TCGA-VQ-A91K-01 6 34029791 34029791 C T GRM4 Missense_Mutation p.A251T 0.33 deleterious(0) benign(0.36) TCGA-VQ-A91K-01 6 34385317 34385317 C T RPS10 Missense_Mutation p.G155E 0.42 deleterious(0.01) unknown(0) TCGA-VQ-A91K-01 6 35260781 35260781 C - ZNF76 Frame_Shift_Del p.Q432Rfs*4 0.30 TCGA-VQ-A91K-01 6 37336551 37336551 A T RNF8 Nonsense_Mutation p.K178* 0.35 TCGA-VQ-A91K-01 6 38952044 38952044 A G DNAH8 Silent p.T4121T 0.35 TCGA-VQ-A91K-01 6 39580993 39580993 A - KIF6 Frame_Shift_Del p.L204* 0.29 TCGA-VQ-A91K-01 6 43400110 43400110 G A ABCC10 Missense_Mutation p.R131Q 0.28 deleterious(0.01) benign(0.029) TCGA-VQ-A91K-01 6 44200661 44200661 G A SLC29A1 Missense_Mutation p.D393N 0.39 deleterious(0) probably_damaging(1) TCGA-VQ-A91K-01 6 46563850 46563850 A G CYP39A1 Silent p.D313D 0.44 TCGA-VQ-A91K-01 6 46995471 46995471 T - GPR110 Frame_Shift_Del p.E33Nfs*4 0.25 TCGA-VQ-A91K-01 6 47567046 47567046 G A CD2AP Silent p.G428G 0.39 TCGA-VQ-A91K-01 6 47591955 47591957 TCT - CD2AP In_Frame_Del p.S639del 0.25 TCGA-VQ-A91K-01 6 47847228 47847228 C T PTCHD4 Missense_Mutation p.R451H 0.47 deleterious(0) possibly_damaging(0.643) TCGA-VQ-A91K-01 6 50686860 50686860 A G TFAP2D Missense_Mutation p.R199G 0.40 deleterious(0.02) possibly_damaging(0.587) TCGA-VQ-A91K-01 6 51799085 51799085 C T PKHD1 Missense_Mutation p.E1982K 0.25 deleterious(0.04) possibly_damaging(0.627) TCGA-VQ-A91K-01 6 51929807 51929807 C T PKHD1 Missense_Mutation p.E308K 0.30 tolerated(0.62) benign(0.259) TCGA-VQ-A91K-01 6 52052499 52052499 C T IL17A Silent p.P42P 0.32 TCGA-VQ-A91K-01 6 52859047 52859047 C T GSTA4 5'UTR 0.32 TCGA-VQ-A91K-01 6 53516605 53516605 G A KLHL31 Missense_Mutation p.R566C 0.50 deleterious(0.04) possibly_damaging(0.696) TCGA-VQ-A91K-01 6 64288882 64288882 G A PTP4A1 Missense_Mutation p.R93H 0.37 tolerated(0.48) benign(0.002) TCGA-VQ-A91K-01 6 70639467 70639467 C T COL19A1 Nonsense_Mutation p.Q181* 0.21 TCGA-VQ-A91K-01 6 70916933 70916933 C T COL19A1 Silent p.C1128C 0.32 TCGA-VQ-A91K-01 6 73000521 73000521 C A RIMS1 Missense_Mutation p.L1232I 0.31 tolerated(0.2) probably_damaging(0.977) TCGA-VQ-A91K-01 6 74229618 74229620 CTT - EEF1A1 In_Frame_Del p.K44del 0.38 TCGA-VQ-A91K-01 6 76023129 76023129 T A FILIP1 Missense_Mutation p.T807S 0.41 deleterious(0) probably_damaging(0.997) TCGA-VQ-A91K-01 6 82461792 82461792 G - FAM46A Frame_Shift_Del p.L23* 0.35 TCGA-VQ-A91K-01 6 83074892 83074892 G A TPBG Missense_Mutation p.A72T 0.53 tolerated(0.11) possibly_damaging(0.511) TCGA-VQ-A91K-01 6 83075011 83075011 C T TPBG Silent p.F111F 0.45 TCGA-VQ-A91K-01 6 83891522 83891522 C T PGM3 Silent p.G268G 0.22 TCGA-VQ-A91K-01 6 84233939 84233939 C T PRSS35 Missense_Mutation p.P260L 0.55 deleterious(0) probably_damaging(1) TCGA-VQ-A91K-01 6 87965854 87965854 A - ZNF292 Frame_Shift_Del p.V838Cfs*20 0.19 TCGA-VQ-A91K-01 6 87970170 87970170 C T ZNF292 Nonsense_Mutation p.R2275* 0.35 TCGA-VQ-A91K-01 6 89872023 89872023 T - PM20D2 3'UTR 0.18 TCGA-VQ-A91K-01 6 97338949 97338949 G T NDUFAF4 3'UTR 0.42 TCGA-VQ-A91K-01 6 9897190 9897190 T C OFCC1 Intron 0.39 TCGA-VQ-A91K-01 7 100014713 100014713 G A ZCWPW1 Missense_Mutation p.A152V 0.39 deleterious(0.04) benign(0.164) TCGA-VQ-A91K-01 7 100151793 100151793 C T AGFG2 Silent p.A221A 0.34 TCGA-VQ-A91K-01 7 100189494 100189494 G A FBXO24 Missense_Mutation p.R214H 0.23 tolerated_low_confidence(0.11) possibly_damaging(0.522) TCGA-VQ-A91K-01 7 100285169 100285170 - G GIGYF1 Frame_Shift_Ins p.L111Pfs*20 0.36 TCGA-VQ-A91K-01 7 100481744 100481744 G - SRRT Frame_Shift_Del p.A216Pfs*6 0.33 TCGA-VQ-A91K-01 7 102246426 102246426 C T RASA4 Missense_Mutation p.G103R 0.24 tolerated(0.06) probably_damaging(0.999) TCGA-VQ-A91K-01 7 102574465 102574465 G A LRRC17 Silent p.A35A 0.29 TCGA-VQ-A91K-01 7 104782922 104782922 T C SRPK2 Missense_Mutation p.Q359R 0.42 tolerated(0.31) benign(0.085) TCGA-VQ-A91K-01 7 105195505 105195505 G A RINT1 Missense_Mutation p.R501Q 0.39 tolerated(0.12) benign(0.398) TCGA-VQ-A91K-01 7 113558901 113558901 C G PPP1R3A Missense_Mutation p.D51H 0.37 deleterious(0) probably_damaging(0.954) TCGA-VQ-A91K-01 7 115594657 115594657 T - TFEC Frame_Shift_Del p.K141Rfs*42 0.35 TCGA-VQ-A91K-01 7 116165024 116165024 C T CAV1 5'UTR 0.35 TCGA-VQ-A91K-01 7 11630233 11630233 C T THSD7A Missense_Mutation p.R436H 0.33 tolerated(0.1) benign(0.021) TCGA-VQ-A91K-01 7 122769466 122769466 C A SLC13A1 Missense_Mutation p.K334N 0.13 deleterious(0.03) possibly_damaging(0.857) TCGA-VQ-A91K-01 7 12662452 12662452 A C SCIN Silent p.P231P 0.36 TCGA-VQ-A91K-01 7 1275527 1275527 G A UNCX Silent p.P170P 0.37 TCGA-VQ-A91K-01 7 127955055 127955055 G T RBM28 Missense_Mutation p.P603T 0.14 tolerated(0.06) benign(0.05) TCGA-VQ-A91K-01 7 129909574 129909574 C T CPA2 Silent p.N73N 0.30 TCGA-VQ-A91K-01 7 129986382 129986382 G A CPA5 Missense_Mutation p.R19Q 0.33 tolerated(0.06) benign(0.004) TCGA-VQ-A91K-01 7 130295883 130295883 C A COPG2 Missense_Mutation p.Q226H 0.34 deleterious(0.01) benign(0.009) TCGA-VQ-A91K-01 7 131878915 131878915 G T PLXNA4 Missense_Mutation p.A921D 0.25 deleterious(0.01) probably_damaging(1) TCGA-VQ-A91K-01 7 134931265 134931265 C T STRA8 Silent p.I181I 0.67 TCGA-VQ-A91K-01 7 136700857 136700857 T C CHRM2 Silent p.P415P 0.33 TCGA-VQ-A91K-01 7 137304628 137304628 C A DGKI Missense_Mutation p.G312V 0.23 deleterious(0) probably_damaging(0.93) TCGA-VQ-A91K-01 7 137304637 137304637 C T DGKI Missense_Mutation p.C309Y 0.22 deleterious(0) probably_damaging(0.95) TCGA-VQ-A91K-01 7 138554415 138554415 C T KIAA1549 Silent p.P1548P 0.34 TCGA-VQ-A91K-01 7 139285326 139285326 C T HIPK2 Missense_Mutation p.G758R 0.46 deleterious(0.04) benign(0.161) TCGA-VQ-A91K-01 7 141479180 141479180 A - TAS2R4 Frame_Shift_Del p.K299Nfs*10 0.11 TCGA-VQ-A91K-01 7 142143838 142143838 C A TRBV6-7 Missense_Mutation p.R53L 0.12 deleterious(0) benign(0) TCGA-VQ-A91K-01 7 142197983 142197983 G A TRBV11-2 RNA 0.36 TCGA-VQ-A91K-01 7 143956190 143956190 A - OR2A7 Frame_Shift_Del p.C178Vfs*37 0.10 TCGA-VQ-A91K-01 7 147926740 147926740 A T CNTNAP2 Missense_Mutation p.S1084C 0.27 deleterious(0) probably_damaging(0.924) TCGA-VQ-A91K-01 7 149129007 149129007 G A ZNF777 Missense_Mutation p.R786C 0.38 tolerated(0.1) probably_damaging(0.987) TCGA-VQ-A91K-01 7 149129204 149129204 C T ZNF777 Missense_Mutation p.R720Q 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-VQ-A91K-01 7 149486266 149486266 A G SSPO RNA 0.33 TCGA-VQ-A91K-01 7 149528298 149528298 G A SSPO RNA 0.45 TCGA-VQ-A91K-01 7 150711133 150711133 C T NOS3 Missense_Mutation p.T1163M 0.21 deleterious(0) probably_damaging(0.997) TCGA-VQ-A91K-01 7 150749540 150749540 C T ASIC3 Missense_Mutation p.P499L 0.25 deleterious(0) possibly_damaging(0.864) TCGA-VQ-A91K-01 7 150783996 150783996 G C AGAP3 Silent p.G56G 0.42 TCGA-VQ-A91K-01 7 1539547 1539547 G A INTS1 Silent p.D219D 0.41 TCGA-VQ-A91K-01 7 154684296 154684296 C T DPP6 3'UTR 0.33 TCGA-VQ-A91K-01 7 155255126 155255126 C T EN2 Missense_Mutation p.T249M 0.35 deleterious(0) probably_damaging(0.998) TCGA-VQ-A91K-01 7 156450943 156450943 C T RNF32 Missense_Mutation p.T191I 0.33 tolerated(0.44) probably_damaging(0.938) TCGA-VQ-A91K-01 7 156469247 156469247 G A RNF32 Silent p.A329A 0.46 TCGA-VQ-A91K-01 7 158677284 158677284 C T WDR60 Silent p.S303S 0.35 TCGA-VQ-A91K-01 7 20782531 20782531 A C ABCB5 Missense_Mutation p.E1019A 0.33 deleterious(0.01) benign(0.096) TCGA-VQ-A91K-01 7 2284275 2284276 - A NUDT1 Frame_Shift_Ins p.R48Afs*26 0.22 TCGA-VQ-A91K-01 7 26404116 26404116 T C SNX10 Intron 0.23 TCGA-VQ-A91K-01 7 26729973 26729973 C T SKAP2 Missense_Mutation p.E269K 0.25 tolerated(0.43) benign(0.269) TCGA-VQ-A91K-01 7 27149962 27149962 G A HOXA3 Missense_Mutation p.P100S 0.44 tolerated(0.63) possibly_damaging(0.641) TCGA-VQ-A91K-01 7 27833943 27833944 - TAA TAX1BP1 In_Frame_Ins p.N475dup 0.30 TCGA-VQ-A91K-01 7 30721583 30721583 G A CRHR2 Silent p.L86L 0.50 TCGA-VQ-A91K-01 7 42004302 42004302 C G GLI3 Missense_Mutation p.A1457P 0.23 tolerated(0.06) benign(0.179) TCGA-VQ-A91K-01 7 4260934 4260934 G T SDK1 Missense_Mutation p.W1922L 0.41 deleterious(0) probably_damaging(0.998) TCGA-VQ-A91K-01 7 44807254 44807254 C T ZMIZ2 3'UTR 0.38 TCGA-VQ-A91K-01 7 45018652 45018652 C T MYO1G 5'UTR 0.50 TCGA-VQ-A91K-01 7 5112671 5112671 G A RBAK-RBAKDN 3'UTR 0.38 TCGA-VQ-A91K-01 7 6026943 6026943 T C PMS2 Missense_Mutation p.T485A 0.39 tolerated(0.75) benign(0) TCGA-VQ-A91K-01 7 63981424 63981424 C T ZNF680 3'UTR 0.38 TCGA-VQ-A91K-01 7 65439970 65439970 C T GUSB Missense_Mutation p.S334N 0.27 tolerated(0.32) benign(0.001) TCGA-VQ-A91K-01 7 66420492 66420492 G A TMEM248 Missense_Mutation p.A310T 0.31 deleterious_low_confidence(0.05) benign(0.002) TCGA-VQ-A91K-01 7 6797336 6797336 A - RSPH10B2 Frame_Shift_Del p.E13Rfs*14 0.18 TCGA-VQ-A91K-01 7 70255857 70255857 G A AUTS2 Missense_Mutation p.A1219T 0.40 deleterious(0) probably_damaging(0.998) TCGA-VQ-A91K-01 7 70800664 70800664 T C WBSCR17 Missense_Mutation p.Y123H 0.10 deleterious(0.02) possibly_damaging(0.69) TCGA-VQ-A91K-01 7 72419542 72419542 G A POM121 3'UTR 0.48 TCGA-VQ-A91K-01 7 72420437 72420437 G A POM121 3'UTR 0.33 TCGA-VQ-A91K-01 7 73961470 73961470 G A GTF2IRD1 Silent p.P622P 0.38 TCGA-VQ-A91K-01 7 74528300 74528300 C T GTF2IRD2B Missense_Mutation p.T70M 0.18 tolerated_low_confidence(0.28) benign(0.004) TCGA-VQ-A91K-01 7 76908333 76908333 C T CCDC146 Nonsense_Mutation p.Q537* 0.40 TCGA-VQ-A91K-01 7 80439944 80439944 G A SEMA3C Missense_Mutation p.T174M 0.41 deleterious(0.03) probably_damaging(1) TCGA-VQ-A91K-01 7 810163 810163 G A HEATR2 Silent p.L613L 0.52 TCGA-VQ-A91K-01 7 82582220 82582220 T G PCLO Missense_Mutation p.R2683S 0.36 unknown(0) TCGA-VQ-A91K-01 7 86468724 86468724 T G GRM3 Missense_Mutation p.F632V 0.38 deleterious(0.01) benign(0.411) TCGA-VQ-A91K-01 7 87178807 87178808 CT - ABCB1 Frame_Shift_Del p.A529Pfs*27 0.30 TCGA-VQ-A91K-01 7 87856264 87856264 T G SRI 5'UTR 0.33 TCGA-VQ-A91K-01 7 893221 893221 C T SUN1 Missense_Mutation p.S410L 0.35 tolerated(1) benign(0) TCGA-VQ-A91K-01 7 91630518 91630518 G C AKAP9 Missense_Mutation p.K429N 0.33 possibly_damaging(0.798) TCGA-VQ-A91K-01 7 91671452 91671455 AAGA - AKAP9 Frame_Shift_Del p.E1672Sfs*33 0.27 TCGA-VQ-A91K-01 7 91700295 91700295 G A AKAP9 Missense_Mutation p.R2195Q 0.37 possibly_damaging(0.801) TCGA-VQ-A91K-01 7 92821632 92821632 T G HEPACAM2 Missense_Mutation p.Q440H 0.31 deleterious(0.02) benign(0.025) TCGA-VQ-A91K-01 7 94034564 94034564 G T COL1A2 Missense_Mutation p.Q162H 0.38 unknown(0) TCGA-VQ-A91K-01 7 94897887 94897887 A T PPP1R9A Silent p.T897T 0.31 TCGA-VQ-A91K-01 7 95157266 95157266 C - ASB4 Frame_Shift_Del p.L212Wfs*59 0.23 TCGA-VQ-A91K-01 7 97823011 97823011 C T LMTK2 Silent p.A1078A 0.17 TCGA-VQ-A91K-01 7 97984416 97984416 T G BAIAP2L1 Missense_Mutation p.Y51S 0.35 deleterious(0) probably_damaging(1) TCGA-VQ-A91K-01 7 98547440 98547440 C T TRRAP Missense_Mutation p.A1697V 0.37 benign(0.005) TCGA-VQ-A91K-01 7 99022765 99022765 G A ATP5J2-PTCD1 Missense_Mutation p.R513W 0.42 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91K-01 7 99030996 99030996 C T ATP5J2-PTCD1 Missense_Mutation p.E216K 0.25 deleterious(0.03) possibly_damaging(0.666) TCGA-VQ-A91K-01 7 99306781 99306781 C T CYP3A7 Missense_Mutation p.C377Y 0.06 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91K-01 7 99526603 99526603 C A GJC3 Missense_Mutation p.G214V 0.30 deleterious(0) possibly_damaging(0.652) TCGA-VQ-A91K-01 7 99655506 99655506 G T ZSCAN21 Missense_Mutation p.K195N 0.42 tolerated(0.43) benign(0.002) TCGA-VQ-A91K-01 8 100994344 100994344 C A RGS22 Missense_Mutation p.D1061Y 0.29 deleterious(0) probably_damaging(1) TCGA-VQ-A91K-01 8 102661652 102661652 C T GRHL2 Silent p.Y541Y 0.26 TCGA-VQ-A91K-01 8 103289349 103289349 T - UBR5 Frame_Shift_Del p.E2121Kfs*28 0.42 TCGA-VQ-A91K-01 8 10468734 10468734 G A RP1L1 Silent p.R958R 0.51 TCGA-VQ-A91K-01 8 104898191 104898191 G A RIMS2 Missense_Mutation p.R455Q 0.30 deleterious_low_confidence(0.04) probably_damaging(0.991) TCGA-VQ-A91K-01 8 10892801 10892801 G T XKR6 Intron 0.43 TCGA-VQ-A91K-01 8 110451202 110451202 A - PKHD1L1 Frame_Shift_Del p.T1281Pfs*28 0.29 TCGA-VQ-A91K-01 8 121301973 121301973 C T COL14A1 Nonsense_Mutation p.R1402* 0.30 TCGA-VQ-A91K-01 8 121463310 121463310 T G MTBP Missense_Mutation p.F89L 0.24 tolerated(0.08) possibly_damaging(0.801) TCGA-VQ-A91K-01 8 124701153 124701153 C G ANXA13 Missense_Mutation p.E267Q 0.30 deleterious(0.05) benign(0.162) TCGA-VQ-A91K-01 8 125565577 125565577 C - MTSS1 Frame_Shift_Del p.E642Sfs*79 0.24 TCGA-VQ-A91K-01 8 126015511 126015511 G A SQLE Missense_Mutation p.V129M 0.29 deleterious(0) probably_damaging(0.99) TCGA-VQ-A91K-01 8 134034304 134034304 G A TG Silent p.P2315P 0.35 TCGA-VQ-A91K-01 8 135649769 135649769 G A ZFAT Missense_Mutation p.T128M 0.43 tolerated(0.14) benign(0.003) TCGA-VQ-A91K-01 8 139629192 139629192 C A COL22A1 Nonsense_Mutation p.G1279* 0.37 TCGA-VQ-A91K-01 8 142221700 142221700 T - SLC45A4 Frame_Shift_Del p.K746Nfs*13 0.24 TCGA-VQ-A91K-01 8 143614739 143614739 G A BAI1 Missense_Mutation p.R1161H 0.44 deleterious(0.01) possibly_damaging(0.812) TCGA-VQ-A91K-01 8 143832568 143832568 C T LYPD2 Missense_Mutation p.V27I 0.29 deleterious(0) benign(0.022) TCGA-VQ-A91K-01 8 144332085 144332085 G A ZFP41 Silent p.A24A 0.23 TCGA-VQ-A91K-01 8 144808283 144808283 G A FAM83H Silent p.R1116R 0.31 TCGA-VQ-A91K-01 8 144810796 144810796 C T FAM83H Missense_Mutation p.A279T 0.43 deleterious(0) probably_damaging(1) TCGA-VQ-A91K-01 8 144904027 144904027 C T PUF60 Silent p.L56L 0.27 TCGA-VQ-A91K-01 8 144992032 144992032 G A PLEC Missense_Mutation p.T4123M 0.45 probably_damaging(0.993) TCGA-VQ-A91K-01 8 144993542 144993542 C T PLEC Missense_Mutation p.V3620M 0.35 probably_damaging(0.992) TCGA-VQ-A91K-01 8 145051857 145051857 C T PARP10 Missense_Mutation p.R958H 0.53 tolerated(0.18) benign(0.031) TCGA-VQ-A91K-01 8 145745420 145745420 G A LRRC14 Missense_Mutation p.S104N 0.32 tolerated(0.57) benign(0.031) TCGA-VQ-A91K-01 8 146003432 146003432 C G ZNF34 Missense_Mutation p.V72L 0.30 tolerated(0.13) benign(0.167) TCGA-VQ-A91K-01 8 146278072 146278072 G A C8orf33 Missense_Mutation p.R36Q 0.46 tolerated_low_confidence(0.42) benign(0.014) TCGA-VQ-A91K-01 8 1497600 1497600 C - DLGAP2 Frame_Shift_Del p.D249Tfs*31 0.30 TCGA-VQ-A91K-01 8 20112537 20112537 G A LZTS1 Silent p.H52H 0.26 TCGA-VQ-A91K-01 8 2017471 2017471 C T MYOM2 Missense_Mutation p.A243V 0.37 deleterious(0.01) possibly_damaging(0.877) TCGA-VQ-A91K-01 8 21926552 21926552 C T DMTN Missense_Mutation p.S92F 0.35 deleterious(0) possibly_damaging(0.899) TCGA-VQ-A91K-01 8 24813503 24813503 G A CTD-2168K21.2 5'Flank 0.42 TCGA-VQ-A91K-01 8 27472180 27472180 G C CLU 5'UTR 0.05 TCGA-VQ-A91K-01 8 27472240 27472240 G T CLU 5'UTR 0.14 TCGA-VQ-A91K-01 8 28309780 28309780 T C FBXO16 Missense_Mutation p.M241V 0.43 tolerated(0.3) benign(0.001) TCGA-VQ-A91K-01 8 28574880 28574880 C - EXTL3 Frame_Shift_Del p.D438Tfs*71 0.32 TCGA-VQ-A91K-01 8 30404961 30404961 C - RBPMS 3'UTR 0.28 TCGA-VQ-A91K-01 8 3059182 3059182 T C CSMD1 Missense_Mutation p.T1684A 0.31 benign(0.001) TCGA-VQ-A91K-01 8 32505698 32505698 A C NRG1 Intron 0.33 TCGA-VQ-A91K-01 8 32621512 32621512 C T NRG1 Silent p.P510P 0.39 TCGA-VQ-A91K-01 8 37794534 37794534 G A GOT1L1 Silent p.I187I 0.31 TCGA-VQ-A91K-01 8 38187222 38187222 T - WHSC1L1 Frame_Shift_Del p.T419Pfs*8 0.08 TCGA-VQ-A91K-01 8 38282110 38282110 G A FGFR1 Missense_Mutation p.P316S 0.38 deleterious(0.01) probably_damaging(0.987) TCGA-VQ-A91K-01 8 38831857 38831857 C T HTRA4 Silent p.P25P 0.38 TCGA-VQ-A91K-01 8 41791749 41791749 T - KAT6A Frame_Shift_Del p.K1330Rfs*3 0.25 TCGA-VQ-A91K-01 8 42828542 42828542 C T HOOK3 Silent p.D411D 0.32 TCGA-VQ-A91K-01 8 48648003 48648003 A C SPIDR Silent p.A913A 0.32 TCGA-VQ-A91K-01 8 48889324 48889324 G A MCM4 Missense_Mutation p.V860M 0.21 deleterious(0.05) possibly_damaging(0.834) TCGA-VQ-A91K-01 8 53570556 53570556 G C RB1CC1 Splice_Site p.X640_splice 0.23 TCGA-VQ-A91K-01 8 54963679 54963679 G A LYPLA1 Missense_Mutation p.P178S 0.26 tolerated(0.06) benign(0.185) TCGA-VQ-A91K-01 8 55537739 55537739 G A RP1 Missense_Mutation p.D433N 0.38 tolerated(0.2) benign(0.025) TCGA-VQ-A91K-01 8 56435885 56435885 C T XKR4 Missense_Mutation p.A351V 0.30 deleterious(0.04) probably_damaging(0.994) TCGA-VQ-A91K-01 8 57026004 57026004 T C MOS Missense_Mutation p.K180E 0.33 tolerated(0.31) possibly_damaging(0.648) TCGA-VQ-A91K-01 8 59851997 59851997 C T TOX Missense_Mutation p.G92D 0.26 deleterious(0.01) probably_damaging(0.994) TCGA-VQ-A91K-01 8 618608 618608 C T ERICH1 Silent p.T416T 0.42 TCGA-VQ-A91K-01 8 6302639 6302639 A - MCPH1 Frame_Shift_Del p.T468Pfs*32 0.21 TCGA-VQ-A91K-01 8 66635839 66635840 - T PDE7A Frame_Shift_Ins p.Y394Ifs*14 0.27 TCGA-VQ-A91K-01 8 67369385 67369385 G A ADHFE1 Silent p.E382E 0.16 TCGA-VQ-A91K-01 8 67716611 67716612 - A SGK3 Frame_Shift_Ins p.Q64Tfs*17 0.65 TCGA-VQ-A91K-01 8 67963532 67963532 C T COPS5 Missense_Mutation p.R235H 0.10 tolerated(0.05) benign(0.004) TCGA-VQ-A91K-01 8 70515544 70515544 G T SULF1 Missense_Mutation p.K393N 0.32 tolerated(0.06) benign(0.248) TCGA-VQ-A91K-01 8 72951127 72951127 A T TRPA1 Missense_Mutation p.S756R 0.24 tolerated(0.53) benign(0.008) TCGA-VQ-A91K-01 8 75156786 75156786 G A JPH1 Missense_Mutation p.A628V 0.25 tolerated(0.51) benign(0.001) TCGA-VQ-A91K-01 8 75157194 75157194 G A JPH1 Missense_Mutation p.A492V 0.38 tolerated(0.21) benign(0.01) TCGA-VQ-A91K-01 8 77764181 77764181 C T ZFHX4 Missense_Mutation p.T1675I 0.46 possibly_damaging(0.702) TCGA-VQ-A91K-01 8 87439966 87439966 C T WWP1 Nonsense_Mutation p.R418* 0.35 TCGA-VQ-A91K-01 8 95531450 95531450 A G KIAA1429 Missense_Mutation p.L759S 0.31 deleterious(0) possibly_damaging(0.568) TCGA-VQ-A91K-01 8 95653492 95653492 T A ESRP1 5'UTR 0.33 TCGA-VQ-A91K-01 8 95686611 95686611 A - ESRP1 Frame_Shift_Del p.N512Tfs*2 0.36 TCGA-VQ-A91K-01 8 99961421 99961421 G A OSR2 Missense_Mutation p.A81T 0.38 tolerated_low_confidence(0.19) benign(0.036) TCGA-VQ-A91K-01 9 100076708 100076709 - T CCDC180 Frame_Shift_Ins p.L211Ffs*6 0.25 TCGA-VQ-A91K-01 9 101304195 101304195 C T GABBR2 Missense_Mutation p.R197H 0.33 tolerated(0.08) probably_damaging(0.956) TCGA-VQ-A91K-01 9 101536183 101536183 G A ANKS6 Silent p.P599P 0.21 TCGA-VQ-A91K-01 9 101911488 101911491 GAGA - TGFBR1 Frame_Shift_Del p.R472Nfs*74 0.55 TCGA-VQ-A91K-01 9 101980765 101980765 G A ALG2 Silent p.Y234Y 0.32 TCGA-VQ-A91K-01 9 112900205 112900205 A G PALM2-AKAP2 Missense_Mutation p.D794G 0.35 deleterious(0) possibly_damaging(0.874) TCGA-VQ-A91K-01 9 115336953 115336953 T G KIAA1958 Missense_Mutation p.V198G 0.38 deleterious(0) possibly_damaging(0.908) TCGA-VQ-A91K-01 9 118950002 118950002 C G PAPPA Missense_Mutation p.Q329E 0.43 deleterious(0.03) benign(0.184) TCGA-VQ-A91K-01 9 123287327 123287327 C T CDK5RAP2 Silent p.K343K 0.25 TCGA-VQ-A91K-01 9 123858798 123858798 A C CNTRL Missense_Mutation p.K193T 0.35 possibly_damaging(0.707) TCGA-VQ-A91K-01 9 125751645 125751645 A G RABGAP1 Silent p.R220R 0.44 TCGA-VQ-A91K-01 9 125797678 125797678 C T GPR21 Missense_Mutation p.T278I 0.41 tolerated(0.2) benign(0.102) TCGA-VQ-A91K-01 9 12694213 12694213 C T TYRP1 Missense_Mutation p.R73W 0.43 deleterious(0) probably_damaging(0.981) TCGA-VQ-A91K-01 9 129642046 129642046 C T ZBTB34 Missense_Mutation p.T119M 0.32 deleterious(0) probably_damaging(1) TCGA-VQ-A91K-01 9 129812354 129812354 A G RALGPS1 Silent p.T111T 0.36 TCGA-VQ-A91K-01 9 130206462 130206462 G T ZNF79 Missense_Mutation p.Q161H 0.25 deleterious(0.04) benign(0.347) TCGA-VQ-A91K-01 9 131186737 131186737 C T CERCAM Missense_Mutation p.R204C 0.26 deleterious(0) probably_damaging(0.957) TCGA-VQ-A91K-01 9 131456972 131456972 T - SET 3'UTR 0.31 TCGA-VQ-A91K-01 9 131554853 131554853 G A TBC1D13 Missense_Mutation p.R128Q 0.43 deleterious(0) probably_damaging(0.998) TCGA-VQ-A91K-01 9 131689341 131689341 C T PHYHD1 Silent p.L20L 0.33 TCGA-VQ-A91K-01 9 131812165 131812165 C T FAM73B Missense_Mutation p.R200W 0.30 deleterious(0) possibly_damaging(0.893) TCGA-VQ-A91K-01 9 132395076 132395076 G - NTMT1 Frame_Shift_Del p.Y34Mfs*20 0.30 TCGA-VQ-A91K-01 9 134404880 134404881 GT - UCK1 Frame_Shift_Del p.H125Lfs*18 0.12 TCGA-VQ-A91K-01 9 134501626 134501626 G A RAPGEF1 Missense_Mutation p.A463V 0.56 tolerated_low_confidence(0.43) benign(0.087) TCGA-VQ-A91K-01 9 136915566 136915566 G - BRD3 Frame_Shift_Del p.P215Qfs*28 0.30 TCGA-VQ-A91K-01 9 137620651 137620651 G A COL5A1 Missense_Mutation p.E308K 0.37 benign(0.143) TCGA-VQ-A91K-01 9 137726943 137726943 G A COL5A1 Missense_Mutation p.A1755T 0.45 unknown(0) TCGA-VQ-A91K-01 9 138376641 138376641 G A PPP1R26 Silent p.A95A 0.46 TCGA-VQ-A91K-01 9 138415818 138415818 C T LCN1 Nonsense_Mutation p.R129* 0.25 TCGA-VQ-A91K-01 9 138671275 138671275 G T KCNT1 Missense_Mutation p.A934S 0.41 deleterious(0.01) possibly_damaging(0.641) TCGA-VQ-A91K-01 9 139273440 139273440 C T SNAPC4 Missense_Mutation p.V947I 0.50 tolerated(0.4) benign(0.003) TCGA-VQ-A91K-01 9 139279194 139279194 T C SNAPC4 Silent p.E466E 0.33 TCGA-VQ-A91K-01 9 139301723 139301723 C T SDCCAG3 Silent p.A231A 0.26 TCGA-VQ-A91K-01 9 139401404 139401404 A G NOTCH1 Missense_Mutation p.V1222A 0.41 tolerated(0.12) benign(0.129) TCGA-VQ-A91K-01 9 139616665 139616665 C - FAM69B Frame_Shift_Del p.R134Gfs*22 0.26 TCGA-VQ-A91K-01 9 139793212 139793212 C - TRAF2 Frame_Shift_Del p.P9Lfs*77 0.22 TCGA-VQ-A91K-01 9 139905119 139905119 G A ABCA2 Missense_Mutation p.R2043W 0.32 deleterious(0) probably_damaging(0.993) TCGA-VQ-A91K-01 9 140078192 140078192 C T ANAPC2 Missense_Mutation p.R367K 0.36 tolerated(0.39) benign(0.124) TCGA-VQ-A91K-01 9 140330621 140330621 C T ENTPD8 Silent p.P298P 0.29 TCGA-VQ-A91K-01 9 14307392 14307392 T A NFIB Missense_Mutation p.E53V 0.09 deleterious(0) probably_damaging(0.977) TCGA-VQ-A91K-01 9 15459986 15459986 A - SNAPC3 3'UTR 0.41 TCGA-VQ-A91K-01 9 15486041 15486041 G C PSIP1 Missense_Mutation p.T140S 0.24 tolerated(0.9) benign(0) TCGA-VQ-A91K-01 9 19058719 19058720 - T HAUS6 Frame_Shift_Ins p.N682Kfs*8 0.20 TCGA-VQ-A91K-01 9 21206426 21206426 C T IFNA10 3'UTR 0.31 TCGA-VQ-A91K-01 9 22006194 22006194 G A CDKN2B Missense_Mutation p.A70V 0.32 deleterious(0) probably_damaging(1) TCGA-VQ-A91K-01 9 22447642 22447642 C T DMRTA1 Missense_Mutation p.A193V 0.51 tolerated(0.13) benign(0.005) TCGA-VQ-A91K-01 9 26886120 26886120 T A CAAP1 Missense_Mutation p.I191F 0.35 deleterious(0.05) benign(0.011) TCGA-VQ-A91K-01 9 2718405 2718405 G A KCNV2 Silent p.A222A 0.29 TCGA-VQ-A91K-01 9 27185545 27185545 C - TEK Frame_Shift_Del p.P417Lfs*10 0.21 TCGA-VQ-A91K-01 9 2718572 2718572 C T KCNV2 Missense_Mutation p.A278V 0.50 deleterious(0.01) benign(0.005) TCGA-VQ-A91K-01 9 32630682 32630682 T G TAF1L Missense_Mutation p.Q1632H 0.43 deleterious(0.04) probably_damaging(0.997) TCGA-VQ-A91K-01 9 32633025 32633025 T - TAF1L Frame_Shift_Del p.A852Pfs*14 0.27 TCGA-VQ-A91K-01 9 35091747 35091747 A G PIGO Silent p.L713L 0.26 TCGA-VQ-A91K-01 9 35092523 35092523 C - PIGO Frame_Shift_Del p.G454Vfs*31 0.22 TCGA-VQ-A91K-01 9 35101435 35101436 AG - STOML2 Frame_Shift_Del p.S189Yfs*19 0.24 TCGA-VQ-A91K-01 9 35661031 35661032 CA - CCDC107 Frame_Shift_Del p.T234Rfs*40 0.37 TCGA-VQ-A91K-01 9 36222800 36222800 T - GNE Frame_Shift_Del p.N567Tfs*21 0.30 TCGA-VQ-A91K-01 9 39888144 39888144 A T SPATA31A2 Silent p.T377T 0.41 TCGA-VQ-A91K-01 9 4118364 4118364 C T GLIS3 Missense_Mutation p.V372M 0.33 tolerated(0.13) benign(0.014) TCGA-VQ-A91K-01 9 41963878 41963878 G T RP11-204M4.2 RNA 0.13 TCGA-VQ-A91K-01 9 4849482 4849482 G A RCL1 Silent p.A301A 0.27 TCGA-VQ-A91K-01 9 5164233 5164233 A G INSL6 Missense_Mutation p.W108R 0.05 deleterious(0.02) benign(0.275) TCGA-VQ-A91K-01 9 70177112 70177112 G A FOXD4L5 Missense_Mutation p.A291V 0.24 tolerated_low_confidence(0.3) benign(0) TCGA-VQ-A91K-01 9 72131117 72131117 C T APBA1 Missense_Mutation p.R337Q 0.48 tolerated_low_confidence(0.05) possibly_damaging(0.791) TCGA-VQ-A91K-01 9 77407538 77407538 A T TRPM6 Splice_Site p.X846_splice 0.27 TCGA-VQ-A91K-01 9 78638724 78638724 C T PCSK5 Missense_Mutation p.T161M 0.34 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91K-01 9 78973526 78973526 C T PCSK5 Silent p.L1757L 0.45 TCGA-VQ-A91K-01 9 8486270 8486270 T C PTPRD Silent p.T849T 0.32 TCGA-VQ-A91K-01 9 88257804 88257804 G A AGTPBP1 Nonsense_Mutation p.R374* 0.46 TCGA-VQ-A91K-01 9 92220909 92220909 A G GADD45G Missense_Mutation p.D132G 0.27 tolerated(0.05) probably_damaging(0.939) TCGA-VQ-A91K-01 9 95030557 95030557 G A IARS Nonsense_Mutation p.R444* 0.30 TCGA-VQ-A91K-01 9 95477685 95477685 G A BICD2 Silent p.D773D 0.34 TCGA-VQ-A91K-01 9 95841797 95841797 C T SUSD3 Missense_Mutation p.T157M 0.22 deleterious(0.04) probably_damaging(0.999) TCGA-VQ-A91K-01 9 96021610 96021610 C - WNK2 Frame_Shift_Del p.H929Ifs*7 0.35 TCGA-VQ-A91K-01 9 990777 990777 G A DMRT3 Silent p.L397L 0.35 TCGA-VQ-A91K-01 9 99799554 99799554 C T CTSV Missense_Mutation p.V126M 0.39 deleterious(0.02) possibly_damaging(0.867) TCGA-VQ-A91K-01 X 10031510 10031510 G A WWC3 5'UTR 0.77 TCGA-VQ-A91K-01 X 101972139 101972139 T A GPRASP2 Missense_Mutation p.I781N 0.76 deleterious(0) possibly_damaging(0.898) TCGA-VQ-A91K-01 X 102192227 102192228 - G RAB40AL 5'UTR 0.53 TCGA-VQ-A91K-01 X 102755621 102755621 C T RAB40A Missense_Mutation p.D22N 0.71 deleterious(0.01) probably_damaging(0.989) TCGA-VQ-A91K-01 X 104464349 104464349 C T TEX13A Missense_Mutation p.E177K 0.86 tolerated(0.16) possibly_damaging(0.636) TCGA-VQ-A91K-01 X 106046064 106046065 - G TBC1D8B 5'UTR 0.40 TCGA-VQ-A91K-01 X 107170344 107170344 C A MID2 3'UTR 0.47 TCGA-VQ-A91K-01 X 118723980 118723980 A T NKRF Missense_Mutation p.Y485N 0.67 deleterious(0.01) benign(0.4) TCGA-VQ-A91K-01 X 119249509 119249509 C T RHOXF1 Silent p.P88P 0.75 TCGA-VQ-A91K-01 X 129629124 129629124 C T RP1-274L7.1 RNA 0.70 TCGA-VQ-A91K-01 X 129629596 129629596 C T RP1-274L7.1 Intron 0.66 TCGA-VQ-A91K-01 X 130412519 130412519 T C IGSF1 Missense_Mutation p.S658G 0.84 tolerated(0.11) benign(0.011) TCGA-VQ-A91K-01 X 149639447 149639447 G T MAMLD1 Silent p.T509T 0.66 TCGA-VQ-A91K-01 X 153042774 153042774 G A PLXNB3 Missense_Mutation p.R1703H 0.75 deleterious(0) possibly_damaging(0.59) TCGA-VQ-A91K-01 X 153582784 153582784 A G FLNA Missense_Mutation p.V1794A 0.81 tolerated(0.05) possibly_damaging(0.792) TCGA-VQ-A91K-01 X 153941620 153941620 G T GAB3 Missense_Mutation p.A153D 0.63 tolerated(0.07) benign(0.097) TCGA-VQ-A91K-01 X 1584784 1584784 G A P2RY8 Missense_Mutation p.T223M 0.15 deleterious(0.03) possibly_damaging(0.823) TCGA-VQ-A91K-01 X 17157049 17157049 G C REPS2 Missense_Mutation p.A627P 0.67 deleterious(0.01) possibly_damaging(0.836) TCGA-VQ-A91K-01 X 2408701 2408701 G T ZBED1 Silent p.R20R 0.32 TCGA-VQ-A91K-01 X 30872408 30872408 G A TAB3 Silent p.T458T 0.84 TCGA-VQ-A91K-01 X 32361293 32361293 T - DMD Frame_Shift_Del p.K1899Nfs*2 0.47 TCGA-VQ-A91K-01 X 3241259 3241259 C T MXRA5 Missense_Mutation p.A823T 0.67 tolerated(0.1) benign(0.254) TCGA-VQ-A91K-01 X 34961044 34961044 G T FAM47B Missense_Mutation p.K32N 0.59 tolerated(0.09) probably_damaging(0.948) TCGA-VQ-A91K-01 X 38020184 38020184 A G SRPX Splice_Site p.X259_splice 0.63 TCGA-VQ-A91K-01 X 38144934 38144935 - T RPGR Frame_Shift_Ins p.S1107Vfs*4 0.53 TCGA-VQ-A91K-01 X 39933336 39933336 G A BCOR Silent p.G421G 0.64 TCGA-VQ-A91K-01 X 46433917 46433917 C T CHST7 Missense_Mutation p.T184M 0.67 deleterious(0.03) benign(0.118) TCGA-VQ-A91K-01 X 47061764 47061764 T C UBA1 Missense_Mutation p.L306S 0.50 deleterious(0) possibly_damaging(0.846) TCGA-VQ-A91K-01 X 50028241 50028241 T C CCNB3 Silent p.H26H 0.65 TCGA-VQ-A91K-01 X 50377348 50377348 C T SHROOM4 Silent p.R575R 0.73 TCGA-VQ-A91K-01 X 53438788 53438788 G A SMC1A Silent p.L393L 0.71 TCGA-VQ-A91K-01 X 53576030 53576030 G A HUWE1 Missense_Mutation p.R3309C 0.50 possibly_damaging(0.689) TCGA-VQ-A91K-01 X 57021240 57021240 C - SPIN3 Frame_Shift_Del p.N48Tfs*18 0.40 TCGA-VQ-A91K-01 X 591784 591784 C T SHOX Missense_Mutation p.T51M 0.38 tolerated_low_confidence(0.12) benign(0.086) TCGA-VQ-A91K-01 X 66941689 66941689 A C AR Missense_Mutation p.K778T 0.83 tolerated(0.19) probably_damaging(0.992) TCGA-VQ-A91K-01 X 71351204 71351204 C T RGAG4 Missense_Mutation p.V63I 0.61 deleterious_low_confidence(0.01) benign(0.355) TCGA-VQ-A91K-01 X 73071753 73071753 A G XIST RNA 0.79 TCGA-VQ-A91K-01 X 75649517 75649517 C T MAGEE1 Silent p.D398D 0.56 TCGA-VQ-A91K-01 X 9677769 9677769 A G TBL1X Missense_Mutation p.S470G 0.73 deleterious(0.04) benign(0.232) TCGA-VQ-A91K-01 X 99662244 99662244 G A PCDH19 Missense_Mutation p.P451L 0.64 deleterious(0) probably_damaging(1) TCGA-VQ-A91K-01 Y 2847335 2847336 - A ZFY Frame_Shift_Ins p.P571Afs*8 0.40 TCGA-VQ-A91N-01 10 105798874 105798874 G A COL17A1 Missense_Mutation p.P968S 0.27 probably_damaging(0.979) TCGA-VQ-A91N-01 10 105800122 105800122 G T COL17A1 Silent p.P916P 0.65 TCGA-VQ-A91N-01 10 105800164 105800164 G C COL17A1 Silent p.T902T 0.66 TCGA-VQ-A91N-01 10 106899209 106899209 G T SORCS3 Missense_Mutation p.A423S 0.15 tolerated(0.1) benign(0.065) TCGA-VQ-A91N-01 10 27538340 27538340 C T RP11-85G18.6 Intron 0.15 TCGA-VQ-A91N-01 10 43015233 43015233 A G ZNF37BP RNA 0.28 TCGA-VQ-A91N-01 10 84118578 84118578 G A NRG3 Missense_Mutation p.E303K 0.25 deleterious(0.03) possibly_damaging(0.654) TCGA-VQ-A91N-01 11 104970105 104970105 T C CARD17 Missense_Mutation p.I106M 0.16 tolerated_low_confidence(0.11) benign(0.004) TCGA-VQ-A91N-01 11 107463145 107463145 T C AP000889.3 Missense_Mutation p.S115P 0.16 deleterious_low_confidence(0) possibly_damaging(0.82) TCGA-VQ-A91N-01 11 124440646 124440646 T G OR8A1 Missense_Mutation p.L228V 0.15 tolerated(0.18) benign(0.068) TCGA-VQ-A91N-01 11 48346846 48346846 T G OR4C3 Silent p.S118S 0.21 TCGA-VQ-A91N-01 11 4968166 4968166 G A OR51A4 Silent p.P55P 0.05 TCGA-VQ-A91N-01 11 49974872 49974872 T C OR4C13 Missense_Mutation p.C300R 0.18 deleterious_low_confidence(0.01) benign(0.24) TCGA-VQ-A91N-01 11 55541130 55541130 T G OR5D13 Missense_Mutation p.F73V 0.53 deleterious(0.03) benign(0.103) TCGA-VQ-A91N-01 11 70333533 70333533 C T SHANK2 Silent p.E956E 0.57 TCGA-VQ-A91N-01 11 82645134 82645134 G C C11orf82 Missense_Mutation p.K918N 0.36 tolerated(0.11) probably_damaging(0.941) TCGA-VQ-A91N-01 11 82645173 82645173 A T C11orf82 Missense_Mutation p.K931N 0.33 tolerated(0.16) benign(0.042) TCGA-VQ-A91N-01 11 87908567 87908567 A C RAB38 5'UTR 0.22 TCGA-VQ-A91N-01 12 104049250 104049250 A G STAB2 Missense_Mutation p.H542R 0.38 tolerated(0.36) benign(0.007) TCGA-VQ-A91N-01 12 108147807 108147807 A G PRDM4 Silent p.G75G 0.14 TCGA-VQ-A91N-01 12 108686279 108686279 C T CMKLR1 Missense_Mutation p.R154H 0.41 deleterious(0.01) possibly_damaging(0.496) TCGA-VQ-A91N-01 12 110252376 110252376 G A TRPV4 Missense_Mutation p.R76C 0.19 tolerated(0.07) possibly_damaging(0.762) TCGA-VQ-A91N-01 12 123200217 123200217 A C HCAR3 Silent p.S356S 0.44 TCGA-VQ-A91N-01 12 130927122 130927122 T G RIMBP2 Missense_Mutation p.T242P 0.14 tolerated(0.16) benign(0.221) TCGA-VQ-A91N-01 12 132512589 132512589 C T EP400 Missense_Mutation p.R1713C 0.51 unknown(0) TCGA-VQ-A91N-01 12 27078707 27078707 C T ASUN Missense_Mutation p.R221H 0.82 tolerated(0.28) benign(0.005) TCGA-VQ-A91N-01 12 50452613 50452613 G A ASIC1 Missense_Mutation p.A22T 0.13 deleterious(0.01) probably_damaging(0.913) TCGA-VQ-A91N-01 12 69746961 69746962 AG - LYZ Frame_Shift_Del p.D138Cfs*33 0.23 TCGA-VQ-A91N-01 12 75693618 75693618 G A CAPS2 Missense_Mutation p.R304C 0.57 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91N-01 12 76444379 76444379 G A NAP1L1 Missense_Mutation p.R331C 0.39 deleterious(0.03) benign(0.351) TCGA-VQ-A91N-01 12 98849631 98849631 G A SLC9A7P1 RNA 0.13 TCGA-VQ-A91N-01 13 20304465 20304465 G A PSPC1 Missense_Mutation p.R358W 0.74 deleterious(0) probably_damaging(0.976) TCGA-VQ-A91N-01 13 37012903 37012903 C A CCNA1 Silent p.T264T 0.10 TCGA-VQ-A91N-01 13 50586961 50586961 T G TRIM13 Missense_Mutation p.D298E 0.19 tolerated(0.12) probably_damaging(0.999) TCGA-VQ-A91N-01 13 70371050 70371050 T C KLHL1 Missense_Mutation p.I487V 0.58 tolerated(0.61) benign(0.07) TCGA-VQ-A91N-01 14 24885633 24885633 G A NYNRIN Missense_Mutation p.E1560K 0.57 deleterious(0) probably_damaging(0.994) TCGA-VQ-A91N-01 14 96730554 96730554 C T BDKRB1 Nonsense_Mutation p.Q179* 0.67 TCGA-VQ-A91N-01 15 68649490 68649490 G A ITGA11 Missense_Mutation p.R250C 0.24 tolerated(0.18) possibly_damaging(0.618) TCGA-VQ-A91N-01 15 71535058 71535061 CAGA - THSD4 Frame_Shift_Del p.D181Lfs*66 0.14 TCGA-VQ-A91N-01 15 78212584 78212584 A T RP11-114H24.7 Intron 0.17 TCGA-VQ-A91N-01 15 82335478 82335478 C T MEX3B 3'UTR 0.27 TCGA-VQ-A91N-01 16 21045343 21045343 G C DNAH3 Missense_Mutation p.T1717S 0.34 deleterious(0.04) benign(0.356) TCGA-VQ-A91N-01 16 23116827 23116827 G A USP31 Silent p.L342L 0.10 TCGA-VQ-A91N-01 16 4924352 4924352 C T UBN1 Silent p.G647G 0.06 TCGA-VQ-A91N-01 16 61761016 61761016 T A CDH8 Missense_Mutation p.E506D 0.27 tolerated(0.06) probably_damaging(0.994) TCGA-VQ-A91N-01 17 15215680 15215680 C T TEKT3 Missense_Mutation p.A333T 0.15 deleterious(0.02) possibly_damaging(0.528) TCGA-VQ-A91N-01 17 18054759 18054759 T G MYO15A Missense_Mutation p.F2569V 0.11 unknown(0) TCGA-VQ-A91N-01 17 45909275 45909275 G C LRRC46 5'UTR 0.59 TCGA-VQ-A91N-01 17 58945939 58945939 C T BCAS3 Missense_Mutation p.T160I 0.12 tolerated(0.13) benign(0.276) TCGA-VQ-A91N-01 17 7577058 7577058 C - TP53 Frame_Shift_Del p.E294Sfs*51 0.44 TCGA-VQ-A91N-01 18 11884302 11884302 G A MPPE1 3'UTR 0.16 TCGA-VQ-A91N-01 18 28935177 28935177 G T DSG1 Missense_Mutation p.L1006F 0.13 deleterious(0.01) benign(0.011) TCGA-VQ-A91N-01 18 56171283 56171283 T G ALPK2 Silent p.R2043R 0.28 TCGA-VQ-A91N-01 18 65178587 65178587 C A DSEL Nonsense_Mutation p.E1097* 0.39 TCGA-VQ-A91N-01 18 67562965 67562965 G C CD226 Silent p.T233T 0.15 TCGA-VQ-A91N-01 19 18054434 18054434 G A CCDC124 Silent p.S194S 0.41 TCGA-VQ-A91N-01 19 19414629 19414629 C T SUGP1 Missense_Mutation p.R189Q 0.29 tolerated(0.06) probably_damaging(0.959) TCGA-VQ-A91N-01 19 22271781 22271781 A T ZNF257 Missense_Mutation p.N410I 0.14 tolerated(0.11) benign(0.081) TCGA-VQ-A91N-01 19 31768179 31768179 G A TSHZ3 Silent p.R840R 0.23 TCGA-VQ-A91N-01 19 40521681 40521681 T C ZNF546 Missense_Mutation p.I835T 0.38 deleterious_low_confidence(0.01) benign(0.001) TCGA-VQ-A91N-01 19 41601855 41601855 T A CYP2A13 3'UTR 0.23 TCGA-VQ-A91N-01 19 43428876 43428876 T A PSG7 3'UTR 0.25 TCGA-VQ-A91N-01 19 44223880 44223880 C T IRGC Silent p.N390N 0.48 TCGA-VQ-A91N-01 19 57327271 57327271 G T PEG3 Missense_Mutation p.H847N 0.22 tolerated(0.2) benign(0.25) TCGA-VQ-A91N-01 19 57327297 57327297 A T PEG3 Nonsense_Mutation p.L838* 0.18 TCGA-VQ-A91N-01 19 9066263 9066263 A G MUC16 Silent p.T7061T 0.16 TCGA-VQ-A91N-01 1 13936955 13936955 C T PDPN Missense_Mutation p.A168V 0.13 tolerated(0.2) benign(0.011) TCGA-VQ-A91N-01 1 152279057 152279057 G T FLG Missense_Mutation p.Q2769K 0.29 benign(0.004) TCGA-VQ-A91N-01 1 152484202 152484202 T G LCE5A Silent p.G64G 0.06 TCGA-VQ-A91N-01 1 153659712 153659712 C T NPR1 Missense_Mutation p.H658Y 0.20 deleterious(0) probably_damaging(1) TCGA-VQ-A91N-01 1 155491215 155491215 G A ASH1L Silent p.V32V 0.52 TCGA-VQ-A91N-01 1 15893705 15893705 G A DNAJC16 Silent p.S630S 0.31 TCGA-VQ-A91N-01 1 169435011 169435011 G A SLC19A2 3'UTR 0.18 TCGA-VQ-A91N-01 1 169497250 169497250 G A F5 Silent p.G1834G 0.41 TCGA-VQ-A91N-01 1 183881394 183881395 - A RGL1 Frame_Shift_Ins p.L619Afs*3 0.53 TCGA-VQ-A91N-01 1 190195246 190195246 G T BRINP3 Silent p.T309T 0.08 TCGA-VQ-A91N-01 1 205240361 205240361 A G TMCC2 Missense_Mutation p.Y599C 0.36 tolerated(0.1) benign(0.178) TCGA-VQ-A91N-01 1 207297535 207297535 C T C4BPA Missense_Mutation p.P177L 0.41 deleterious(0.04) possibly_damaging(0.817) TCGA-VQ-A91N-01 1 228285138 228285138 T G ARF1 Missense_Mutation p.F82V 0.15 deleterious_low_confidence(0) possibly_damaging(0.582) TCGA-VQ-A91N-01 1 237758806 237758806 G A RYR2 Missense_Mutation p.R1482H 0.50 benign(0.08) TCGA-VQ-A91N-01 1 245809551 245809551 C T KIF26B Missense_Mutation p.L743F 0.12 deleterious(0) unknown(0) TCGA-VQ-A91N-01 1 50659493 50659493 C T ELAVL4 Silent p.S154S 0.20 TCGA-VQ-A91N-01 1 52854943 52854943 C T ORC1 Missense_Mutation p.R378H 0.13 deleterious(0.05) benign(0.028) TCGA-VQ-A91N-01 1 66723333 66723333 C T PDE4B Silent p.H160H 0.22 TCGA-VQ-A91N-01 1 82456550 82456550 C T LPHN2 Silent p.N1311N 0.19 TCGA-VQ-A91N-01 20 10628701 10628701 G A JAG1 Missense_Mutation p.R543C 0.16 deleterious(0) possibly_damaging(0.657) TCGA-VQ-A91N-01 20 16492122 16492122 G A KIF16B Missense_Mutation p.S166L 0.16 deleterious(0.03) probably_damaging(0.999) TCGA-VQ-A91N-01 20 20512412 20512412 G C RALGAPA2 Silent p.V1167V 0.14 TCGA-VQ-A91N-01 20 23065575 23065575 C T CD93 Missense_Mutation p.G419R 0.19 deleterious(0.02) benign(0.141) TCGA-VQ-A91N-01 20 25596777 25596777 G A NANP Silent p.L177L 0.28 TCGA-VQ-A91N-01 20 43739299 43739299 C T WFDC5 Missense_Mutation p.R68H 0.15 deleterious(0.02) probably_damaging(0.998) TCGA-VQ-A91N-01 22 50615534 50615534 C T PANX2 Silent p.F131F 0.21 TCGA-VQ-A91N-01 2 141259274 141259274 G T LRP1B Missense_Mutation p.D2944E 0.35 benign(0.417) TCGA-VQ-A91N-01 2 169038504 169038504 C G STK39 Missense_Mutation p.S102T 0.26 tolerated(0.08) benign(0.054) TCGA-VQ-A91N-01 2 182780822 182780822 C T SSFA2 Missense_Mutation p.R819W 0.13 deleterious(0.03) possibly_damaging(0.761) TCGA-VQ-A91N-01 2 238250722 238250722 C G COL6A3 Missense_Mutation p.C2584S 0.27 unknown(0) TCGA-VQ-A91N-01 2 27355741 27355741 A C PREB Missense_Mutation p.I199M 0.23 deleterious(0.02) probably_damaging(0.985) TCGA-VQ-A91N-01 2 27481768 27481768 C T SLC30A3 Missense_Mutation p.E44K 0.14 tolerated(0.13) benign(0.031) TCGA-VQ-A91N-01 2 27803529 27803529 G A C2orf16 Missense_Mutation p.A1364T 0.13 deleterious(0.03) probably_damaging(0.989) TCGA-VQ-A91N-01 2 61577781 61577781 G A USP34 Silent p.I433I 0.08 TCGA-VQ-A91N-01 2 80529919 80529919 G A LRRTM1 Silent p.C342C 0.25 TCGA-VQ-A91N-01 2 90108909 90108909 G A IGKV6D-41 Silent p.Q58Q 0.20 TCGA-VQ-A91N-01 3 128628963 128628963 C T ACAD9 Missense_Mutation p.R555C 0.24 tolerated(0.21) benign(0.003) TCGA-VQ-A91N-01 3 140282022 140282022 G A CLSTN2 Missense_Mutation p.R820Q 0.34 tolerated(0.6) benign(0) TCGA-VQ-A91N-01 3 141497439 141497439 G A GRK7 Missense_Mutation p.A105T 0.36 tolerated(0.2) benign(0.013) TCGA-VQ-A91N-01 3 15686169 15686169 C T BTD Missense_Mutation p.P269L 0.06 deleterious(0.01) probably_damaging(0.973) TCGA-VQ-A91N-01 3 16399498 16399498 C T RFTN1 Missense_Mutation p.D363N 0.12 deleterious(0) possibly_damaging(0.842) TCGA-VQ-A91N-01 3 180320018 180320018 C A TTC14 5'UTR 0.20 TCGA-VQ-A91N-01 3 49934847 49934847 C T MST1R Silent p.E683E 0.31 TCGA-VQ-A91N-01 3 54930873 54930873 G C CACNA2D3 Missense_Mutation p.V782L 0.22 tolerated(0.15) benign(0.022) TCGA-VQ-A91N-01 3 58552906 58552906 G A FAM107A Intron 0.44 TCGA-VQ-A91N-01 3 64619150 64619150 G A ADAMTS9 Missense_Mutation p.R725W 0.54 deleterious(0.02) benign(0.057) TCGA-VQ-A91N-01 3 9781322 9781322 C T BRPF1 Silent p.C413C 0.14 TCGA-VQ-A91N-01 3 9809367 9809367 G A CAMK1 Nonsense_Mutation p.R23* 0.05 TCGA-VQ-A91N-01 4 156763414 156763414 T G ASIC5 Missense_Mutation p.E318D 0.40 deleterious(0.02) probably_damaging(0.912) TCGA-VQ-A91N-01 4 177116662 177116662 G T SPATA4 Missense_Mutation p.L18I 0.29 tolerated_low_confidence(0.49) benign(0) TCGA-VQ-A91N-01 4 25005103 25005103 A G LGI2 Silent p.F536F 0.22 TCGA-VQ-A91N-01 4 37831664 37831664 C T PGM2 Nonsense_Mutation p.R54* 0.20 TCGA-VQ-A91N-01 5 13769644 13769644 T C DNAH5 Missense_Mutation p.K3229R 0.09 possibly_damaging(0.621) TCGA-VQ-A91N-01 5 140481268 140481268 G A PCDHB3 Silent p.P345P 0.36 TCGA-VQ-A91N-01 5 169412885 169412885 G A DOCK2 Silent p.V984V 0.56 TCGA-VQ-A91N-01 5 178358632 178358632 G A ZFP2 Silent p.Q106Q 0.10 TCGA-VQ-A91N-01 5 89781449 89781449 G A POLR3G Missense_Mutation p.S22N 0.19 tolerated(0.05) possibly_damaging(0.849) TCGA-VQ-A91N-01 6 133135880 133135880 G T RPS12 5'UTR 0.07 TCGA-VQ-A91N-01 6 144508500 144508500 G A STX11 Missense_Mutation p.E246K 0.20 deleterious(0.02) probably_damaging(0.966) TCGA-VQ-A91N-01 6 152774765 152774765 G T SYNE1 Missense_Mutation p.Q995K 0.31 benign(0.024) TCGA-VQ-A91N-01 6 159128290 159128290 C G SYTL3 Silent p.L141L 0.06 TCGA-VQ-A91N-01 6 159128303 159128303 C T SYTL3 Nonsense_Mutation p.Q146* 0.07 TCGA-VQ-A91N-01 6 27834828 27834828 C A HIST1H1B Missense_Mutation p.K160N 0.13 deleterious(0.01) unknown(0) TCGA-VQ-A91N-01 6 30627365 30627365 G A DHX16 Missense_Mutation p.R631C 0.53 deleterious(0) unknown(0) TCGA-VQ-A91N-01 6 31614237 31614237 G C BAG6 Silent p.L290L 0.58 TCGA-VQ-A91N-01 6 32800549 32800549 C T TAP2 Missense_Mutation p.R333Q 0.66 tolerated(0.33) benign(0.064) TCGA-VQ-A91N-01 6 4952529 4952529 G T CDYL Missense_Mutation p.K454N 0.62 deleterious(0) probably_damaging(0.94) TCGA-VQ-A91N-01 6 76022453 76022453 A T FILIP1 Missense_Mutation p.M1032K 0.62 tolerated(0.32) benign(0.07) TCGA-VQ-A91N-01 7 106508490 106508490 G A PIK3CG Missense_Mutation p.V162I 0.19 tolerated(0.26) benign(0.362) TCGA-VQ-A91N-01 7 107558470 107558470 G A DLD Silent p.S446S 0.11 TCGA-VQ-A91N-01 7 33427608 33427608 G A BBS9 Missense_Mutation p.R656Q 0.19 deleterious(0) probably_damaging(0.982) TCGA-VQ-A91N-01 8 121535649 121535649 A G MTBP 3'UTR 0.10 TCGA-VQ-A91N-01 8 13959946 13959946 G A SGCZ Missense_Mutation p.A228V 0.39 tolerated(0.31) benign(0.01) TCGA-VQ-A91N-01 8 17447205 17447205 G C PDGFRL Missense_Mutation p.R95P 0.62 deleterious(0) probably_damaging(1) TCGA-VQ-A91N-01 8 21977999 21977999 G C HR Missense_Mutation p.Q878E 0.21 deleterious(0.01) benign(0.196) TCGA-VQ-A91N-01 8 22021562 22021562 C G SFTPC 3'UTR 0.44 TCGA-VQ-A91N-01 8 24200629 24200629 G C ADAM28 Missense_Mutation p.E616Q 0.11 tolerated(0.06) probably_damaging(0.969) TCGA-VQ-A91N-01 8 27168460 27168460 G C TRIM35 Missense_Mutation p.S98W 0.23 deleterious(0.01) possibly_damaging(0.729) TCGA-VQ-A91N-01 8 3257026 3257026 C T CSMD1 Silent p.A764A 0.58 TCGA-VQ-A91N-01 8 69136816 69136816 C T PREX2 Missense_Mutation p.A1577V 0.52 deleterious(0) benign(0.146) TCGA-VQ-A91N-01 9 100405617 100405617 A G NCBP1 Missense_Mutation p.N119S 0.04 tolerated(0.52) possibly_damaging(0.696) TCGA-VQ-A91N-01 9 136898775 136898775 G A BRD3 Silent p.S706S 0.13 TCGA-VQ-A91N-01 9 15479640 15479640 C T PSIP1 Missense_Mutation p.A168T 0.08 tolerated(0.4) benign(0.012) TCGA-VQ-A91N-01 9 39109217 39109217 C T CNTNAP3 Missense_Mutation p.A769T 0.16 tolerated(1) benign(0.001) TCGA-VQ-A91N-01 X 20222161 20222161 A G RPS6KA3 Silent p.L102L 0.16 TCGA-VQ-A91N-01 X 22003259 22003259 C A SMS Intron 0.15 TCGA-VQ-A91N-01 X 39933002 39933002 C T BCOR Missense_Mutation p.D533N 0.23 deleterious(0) possibly_damaging(0.574) TCGA-VQ-A91N-01 X 43590527 43590527 C T MAOA Missense_Mutation p.R229W 0.22 deleterious(0) possibly_damaging(0.881) TCGA-VQ-A91N-01 X 53239917 53239917 G C KDM5C Missense_Mutation p.F508L 0.37 deleterious(0.02) probably_damaging(0.999) TCGA-VQ-A91N-01 X 53432587 53432587 C T SMC1A Silent p.E583E 0.50 TCGA-VQ-A91N-01 X 54783716 54783716 A T ITIH6 Missense_Mutation p.F931I 0.19 tolerated(0.05) benign(0.089) TCGA-VQ-A91N-01 X 86924267 86924267 A G KLHL4 Intron 0.27 TCGA-VQ-A91N-01 X 86924327 86924327 A C KLHL4 Splice_Site p.X700_splice 0.19 TCGA-VQ-A91Q-01 10 115489260 115489260 G T CASP7 Silent p.V324V 0.29 TCGA-VQ-A91Q-01 10 125521429 125521429 T A CPXM2 Missense_Mutation p.E579V 0.36 tolerated(0.24) possibly_damaging(0.685) TCGA-VQ-A91Q-01 10 60029033 60029033 C G CISD1 5'UTR 0.36 TCGA-VQ-A91Q-01 10 91143190 91143190 G T IFIT1B Missense_Mutation p.W40C 0.31 tolerated(0.2) benign(0) TCGA-VQ-A91Q-01 10 95111211 95111211 C T MYOF Missense_Mutation p.G1261R 0.28 deleterious(0) probably_damaging(0.989) TCGA-VQ-A91Q-01 10 97759916 97759916 C A CC2D2B 5'UTR 0.38 TCGA-VQ-A91Q-01 11 33564824 33564824 A G KIAA1549L Missense_Mutation p.N275S 0.07 tolerated_low_confidence(0.2) benign(0.026) TCGA-VQ-A91Q-01 11 46637339 46637339 C T HARBI1 Missense_Mutation p.C150Y 0.35 deleterious(0.03) benign(0.244) TCGA-VQ-A91Q-01 11 57077358 57077358 G A TNKS1BP1 Missense_Mutation p.R943W 0.42 deleterious(0.04) benign(0.016) TCGA-VQ-A91Q-01 11 60064785 60064785 G A MS4A4A Nonsense_Mutation p.W106* 0.25 TCGA-VQ-A91Q-01 11 65617423 65617423 C A SNX32 Missense_Mutation p.F58L 0.11 tolerated(0.09) benign(0.005) TCGA-VQ-A91Q-01 11 6593029 6593029 G C DNHD1 Missense_Mutation p.G4692A 0.31 benign(0.02) TCGA-VQ-A91Q-01 12 100811902 100811902 C G SLC17A8 Missense_Mutation p.P465A 0.53 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91Q-01 12 121868207 121868207 C A KDM2B Missense_Mutation p.D1299Y 0.16 deleterious(0) probably_damaging(0.998) TCGA-VQ-A91Q-01 12 124118188 124118188 C T EIF2B1 5'UTR 0.54 TCGA-VQ-A91Q-01 12 15264290 15264290 G A RERG Silent p.D60D 0.37 TCGA-VQ-A91Q-01 12 18865900 18865900 C T PLCZ1 Missense_Mutation p.R197H 0.11 deleterious(0) probably_damaging(1) TCGA-VQ-A91Q-01 12 1965376 1965376 G T CACNA2D4 Missense_Mutation p.H676Q 0.26 tolerated(0.38) benign(0.002) TCGA-VQ-A91Q-01 12 49446007 49446007 G A KMT2D Missense_Mutation p.R487W 0.43 unknown(0) TCGA-VQ-A91Q-01 12 63991647 63991647 G A DPY19L2 Missense_Mutation p.T468I 0.16 deleterious(0.04) benign(0.051) TCGA-VQ-A91Q-01 12 64377832 64377832 A T SRGAP1 Missense_Mutation p.E58V 0.06 deleterious(0) probably_damaging(0.991) TCGA-VQ-A91Q-01 12 69126447 69126447 T A NUP107 Missense_Mutation p.W677R 0.02 deleterious(0) probably_damaging(0.979) TCGA-VQ-A91Q-01 13 28964224 28964224 G C FLT1 Missense_Mutation p.H560D 0.25 tolerated(0.53) benign(0.421) TCGA-VQ-A91Q-01 13 46543696 46543696 T C ZC3H13 Missense_Mutation p.K995E 0.34 unknown(0) TCGA-VQ-A91Q-01 14 107199020 107199020 G A IGHV3-72 Missense_Mutation p.T90I 0.33 deleterious_low_confidence(0.04) probably_damaging(0.999) TCGA-VQ-A91Q-01 14 23826720 23826720 C T EFS Silent p.P467P 0.55 TCGA-VQ-A91Q-01 14 53327116 53327116 C T FERMT2 Missense_Mutation p.R564K 0.60 tolerated(0.4) benign(0.001) TCGA-VQ-A91Q-01 14 96922681 96922681 C G AK7 Intron 0.68 TCGA-VQ-A91Q-01 15 40921539 40921539 G A CASC5 Silent p.Q1910Q 0.29 TCGA-VQ-A91Q-01 16 1306533 1306533 G A TPSD1 Silent p.L33L 0.26 TCGA-VQ-A91Q-01 16 19483451 19483451 G A TMC5 Silent p.T608T 0.36 TCGA-VQ-A91Q-01 16 23096215 23096215 G C USP31 Missense_Mutation p.S599C 0.33 deleterious(0.02) probably_damaging(0.992) TCGA-VQ-A91Q-01 16 56500820 56500820 C G OGFOD1 Missense_Mutation p.L200V 0.29 deleterious(0.05) possibly_damaging(0.836) TCGA-VQ-A91Q-01 16 57005960 57005960 G A CETP Missense_Mutation p.V239I 0.31 tolerated(0.16) benign(0.001) TCGA-VQ-A91Q-01 16 57507925 57507926 - A DOK4 Frame_Shift_Ins p.Y209Lfs*81 0.28 TCGA-VQ-A91Q-01 16 83781722 83781722 T G CDH13 Silent p.V563V 0.04 TCGA-VQ-A91Q-01 16 8949065 8949065 C G CARHSP1 Missense_Mutation p.G134R 0.31 deleterious(0.04) probably_damaging(0.924) TCGA-VQ-A91Q-01 17 16004959 16004959 G C NCOR1 Silent p.P765P 0.53 TCGA-VQ-A91Q-01 17 37571510 37571510 G A MED1 Silent p.D460D 0.18 TCGA-VQ-A91Q-01 17 37790189 37790189 A C PPP1R1B Missense_Mutation p.N99H 0.26 tolerated(0.19) benign(0.011) TCGA-VQ-A91Q-01 17 51902455 51902455 C A KIF2B 3'UTR 0.34 TCGA-VQ-A91Q-01 18 19751597 19751597 C G GATA6 Silent p.G164G 0.20 TCGA-VQ-A91Q-01 18 30092009 30092009 A C WBP11P1 RNA 0.22 TCGA-VQ-A91Q-01 18 5292035 5292035 T A ZBTB14 Missense_Mutation p.S58C 0.31 deleterious(0) probably_damaging(0.996) TCGA-VQ-A91Q-01 18 8384622 8384622 G T PTPRM Missense_Mutation p.V1328F 0.15 tolerated(0.05) probably_damaging(0.965) TCGA-VQ-A91Q-01 19 21324990 21324990 G T ZNF431 Splice_Site p.X1_splice 0.27 TCGA-VQ-A91Q-01 19 37211000 37211000 C T ZNF567 Silent p.F427F 0.17 TCGA-VQ-A91Q-01 19 38127107 38127107 C G ZFP30 Missense_Mutation p.C112S 0.31 tolerated(0.43) benign(0.006) TCGA-VQ-A91Q-01 19 42219779 42219779 A G CEACAM5 Missense_Mutation p.D305G 0.04 tolerated(0.33) unknown(0) TCGA-VQ-A91Q-01 19 48551530 48551530 G A PLA2G4C 3'UTR 0.28 TCGA-VQ-A91Q-01 19 51630465 51630465 G C SIGLEC9 Missense_Mutation p.W309C 0.08 tolerated(0.12) benign(0.349) TCGA-VQ-A91Q-01 19 53459345 53459345 G T ZNF816 5'UTR 0.26 TCGA-VQ-A91Q-01 19 5667092 5667092 C T SAFB Silent p.H790H 0.24 TCGA-VQ-A91Q-01 19 56895691 56895691 T A ZNF582 Missense_Mutation p.K365N 0.04 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A91Q-01 1 113119655 113119655 C T ST7L Missense_Mutation p.V400M 0.13 deleterious(0.03) probably_damaging(0.982) TCGA-VQ-A91Q-01 1 119619106 119619106 C T WARS2 Missense_Mutation p.S72N 0.43 deleterious(0.01) probably_damaging(0.968) TCGA-VQ-A91Q-01 1 144864272 144864272 G T PDE4DIP Silent p.S1941S 0.14 TCGA-VQ-A91Q-01 1 162748389 162748389 G C DDR2 Missense_Mutation p.S768T 0.35 deleterious(0) probably_damaging(0.998) TCGA-VQ-A91Q-01 1 21031010 21031010 G A KIF17 Silent p.R351R 0.37 TCGA-VQ-A91Q-01 1 210856709 210856709 T A KCNH1 Nonsense_Mutation p.R962* 0.03 TCGA-VQ-A91Q-01 1 216380660 216380660 T A USH2A Missense_Mutation p.R1091W 0.33 probably_damaging(1) TCGA-VQ-A91Q-01 1 222695972 222695972 G T HHIPL2 Missense_Mutation p.Q716K 0.38 tolerated_low_confidence(0.89) benign(0) TCGA-VQ-A91Q-01 1 236751298 236751298 A C HEATR1 Missense_Mutation p.L526V 0.37 deleterious(0) probably_damaging(0.976) TCGA-VQ-A91Q-01 1 241725547 241725547 T A KMO Missense_Mutation p.L177Q 0.37 deleterious(0) probably_damaging(0.971) TCGA-VQ-A91Q-01 1 36769445 36769445 C T THRAP3 Missense_Mutation p.R899W 0.24 deleterious(0) probably_damaging(0.988) TCGA-VQ-A91Q-01 20 21687508 21687508 C T PAX1 Missense_Mutation p.P240L 0.23 deleterious(0.03) benign(0.023) TCGA-VQ-A91Q-01 20 51872727 51872727 G A TSHZ2 Silent p.T910T 0.33 TCGA-VQ-A91Q-01 22 24458419 24458420 - TGA CABIN1 In_Frame_Ins p.M544dup 0.48 TCGA-VQ-A91Q-01 22 50633466 50633473 GCAGGTGC - TRABD Splice_Site p.X140_splice 0.67 TCGA-VQ-A91Q-01 2 106761735 106761735 G A UXS1 Missense_Mutation p.T128M 0.10 deleterious(0.03) possibly_damaging(0.576) TCGA-VQ-A91Q-01 2 113418754 113418754 T A SLC20A1 Missense_Mutation p.V610E 0.24 deleterious(0) probably_damaging(0.996) TCGA-VQ-A91Q-01 2 120221801 120221801 G T SCTR Missense_Mutation p.H178Q 0.35 deleterious(0.02) probably_damaging(1) TCGA-VQ-A91Q-01 2 138421127 138421127 C T THSD7B Missense_Mutation p.L1548F 0.30 deleterious(0.01) unknown(0) TCGA-VQ-A91Q-01 2 162762260 162762260 C T SLC4A10 Silent p.I620I 0.36 TCGA-VQ-A91Q-01 2 162762306 162762306 T A SLC4A10 Missense_Mutation p.F636I 0.21 deleterious(0) probably_damaging(0.997) TCGA-VQ-A91Q-01 2 165997429 165997429 G T SCN3A Missense_Mutation p.A584E 0.27 tolerated(0.31) benign(0.315) TCGA-VQ-A91Q-01 2 166179774 166179774 G A SCN2A Missense_Mutation p.A594T 0.38 tolerated(0.18) probably_damaging(0.999) TCGA-VQ-A91Q-01 2 168114776 168114776 G A XIRP2 3'UTR 0.05 TCGA-VQ-A91Q-01 2 190554396 190554396 T G ANKAR Missense_Mutation p.F249V 0.29 tolerated(0.14) possibly_damaging(0.581) TCGA-VQ-A91Q-01 2 198950584 198950584 T G PLCL1 Silent p.T781T 0.29 TCGA-VQ-A91Q-01 2 20101582 20101582 G C TTC32 Missense_Mutation p.L12V 0.25 deleterious(0.03) benign(0.195) TCGA-VQ-A91Q-01 2 235949729 235949729 T C SH3BP4 Missense_Mutation p.S106P 0.44 deleterious_low_confidence(0.01) possibly_damaging(0.653) TCGA-VQ-A91Q-01 2 26477121 26477121 G A HADHB 5'UTR 0.38 TCGA-VQ-A91Q-01 2 33820673 33820673 G A FAM98A Missense_Mutation p.L29F 0.32 tolerated(0.15) probably_damaging(0.976) TCGA-VQ-A91Q-01 2 69040465 69040465 C T ARHGAP25 Nonsense_Mutation p.R241* 0.26 TCGA-VQ-A91Q-01 3 10094104 10094104 C T FANCD2 Nonsense_Mutation p.Q527* 0.22 TCGA-VQ-A91Q-01 3 123418942 123418942 G C MYLK Missense_Mutation p.P1125A 0.30 tolerated(0.1) benign(0.008) TCGA-VQ-A91Q-01 3 138329675 138329675 T G FAIM 5'UTR 0.33 TCGA-VQ-A91Q-01 3 167016178 167016178 A G ZBBX Silent p.F598F 0.21 TCGA-VQ-A91Q-01 3 167272470 167272470 C A WDR49 Splice_Site p.X256_splice 0.28 TCGA-VQ-A91Q-01 3 183777669 183777669 G A HTR3C Missense_Mutation p.V327I 0.18 tolerated(1) benign(0.006) TCGA-VQ-A91Q-01 3 186969441 186969441 G C MASP1 Missense_Mutation p.T331R 0.45 deleterious(0.03) benign(0.16) TCGA-VQ-A91Q-01 3 37365656 37365656 A T GOLGA4 Missense_Mutation p.Q782L 0.35 possibly_damaging(0.549) TCGA-VQ-A91Q-01 3 52179896 52179896 G A POC1A Silent p.D215D 0.30 TCGA-VQ-A91Q-01 3 52544395 52544395 C T STAB1 Missense_Mutation p.H887Y 0.06 tolerated(1) benign(0.001) TCGA-VQ-A91Q-01 3 9787292 9787292 C T BRPF1 Missense_Mutation p.S1035F 0.30 deleterious(0) probably_damaging(0.989) TCGA-VQ-A91Q-01 4 129131281 129131281 T A LARP1B 3'UTR 0.09 TCGA-VQ-A91Q-01 4 178231096 178231096 C T NEIL3 5'UTR 0.25 TCGA-VQ-A91Q-01 4 25804006 25804006 C G SEL1L3 Missense_Mutation p.G619R 0.16 deleterious(0) probably_damaging(1) TCGA-VQ-A91Q-01 4 3224203 3224203 A T HTT Missense_Mutation p.S2487C 0.20 possibly_damaging(0.566) TCGA-VQ-A91Q-01 4 38047490 38047490 G A TBC1D1 Missense_Mutation p.S532N 0.15 tolerated(0.4) possibly_damaging(0.66) TCGA-VQ-A91Q-01 4 55127506 55127506 C A PDGFRA Nonsense_Mutation p.Y98* 0.05 TCGA-VQ-A91Q-01 4 76551139 76551139 C A CDKL2 Nonsense_Mutation p.E12* 0.06 TCGA-VQ-A91Q-01 5 140237187 140237187 G A PCDHA10 Silent p.A518A 0.29 TCGA-VQ-A91Q-01 5 145651188 145651188 T A RBM27 Missense_Mutation p.V980D 0.33 deleterious(0) benign(0.355) TCGA-VQ-A91Q-01 5 150946835 150946835 T A FAT2 Missense_Mutation p.Q553L 0.13 benign(0.009) TCGA-VQ-A91Q-01 5 179729555 179729555 G A GFPT2 Silent p.D624D 0.08 TCGA-VQ-A91Q-01 5 180651617 180651617 G C TRIM41 Missense_Mutation p.Q206H 0.37 deleterious(0.01) benign(0.15) TCGA-VQ-A91Q-01 5 33441103 33441103 C A TARS 5'UTR 0.08 TCGA-VQ-A91Q-01 5 73136559 73136559 G C ARHGEF28 Missense_Mutation p.K467N 0.19 tolerated(0.08) benign(0.032) TCGA-VQ-A91Q-01 5 9043030 9043030 G C SEMA5A Silent p.L1068L 0.25 TCGA-VQ-A91Q-01 6 125233545 125233545 T G RP11-510H23.1 RNA 0.44 TCGA-VQ-A91Q-01 6 129618971 129618971 G T LAMA2 Missense_Mutation p.A1000S 0.46 tolerated(0.29) benign(0.264) TCGA-VQ-A91Q-01 6 37612396 37612396 T A MDGA1 Missense_Mutation p.I760F 0.12 deleterious(0) probably_damaging(0.996) TCGA-VQ-A91Q-01 6 41118050 41118050 C T TREML1 Silent p.G190G 0.20 TCGA-VQ-A91Q-01 6 41118051 41118051 C T TREML1 Missense_Mutation p.G190E 0.19 deleterious(0.01) probably_damaging(0.991) TCGA-VQ-A91Q-01 6 43418418 43418418 G A DLK2 Silent p.C337C 0.16 TCGA-VQ-A91Q-01 6 90572158 90572158 A T CASP8AP2 RNA 0.32 TCGA-VQ-A91Q-01 7 138583748 138583748 C A KIAA1549 Missense_Mutation p.R1267I 0.56 deleterious(0) probably_damaging(1) TCGA-VQ-A91Q-01 7 33390836 33390836 G A BBS9 Missense_Mutation p.D480N 0.38 tolerated(0.42) benign(0.002) TCGA-VQ-A91Q-01 7 37780085 37780085 C T GPR141 Silent p.G30G 0.33 TCGA-VQ-A91Q-01 7 48312083 48312083 A G ABCA13 Silent p.E940E 0.33 TCGA-VQ-A91Q-01 7 4899920 4899920 C A PAPOLB Missense_Mutation p.A507S 0.28 tolerated(0.27) benign(0.101) TCGA-VQ-A91Q-01 7 63726365 63726365 T G ZNF679 Missense_Mutation p.S118R 0.31 tolerated(0.07) benign(0.003) TCGA-VQ-A91Q-01 7 70252343 70252343 G A AUTS2 Silent p.A819A 0.21 TCGA-VQ-A91Q-01 7 80290392 80290392 G A CD36 Missense_Mutation p.A99T 0.23 tolerated(0.15) benign(0.213) TCGA-VQ-A91Q-01 7 97784092 97784092 C T LMTK2 Missense_Mutation p.T158M 0.22 deleterious(0) probably_damaging(0.988) TCGA-VQ-A91Q-01 7 99170374 99170374 G A ZNF655 Missense_Mutation p.D250N 0.05 tolerated(0.91) possibly_damaging(0.728) TCGA-VQ-A91Q-01 8 128428668 128428668 G A POU5F1B Missense_Mutation p.R186H 0.32 deleterious(0.02) benign(0.065) TCGA-VQ-A91Q-01 8 97605802 97605802 C T SDC2 Missense_Mutation p.A52V 0.24 deleterious(0.03) possibly_damaging(0.639) TCGA-VQ-A91Q-01 9 112029789 112029789 G T EPB41L4B Missense_Mutation p.S166Y 0.40 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91Q-01 9 140094141 140094141 C A TPRN Silent p.G341G 0.33 TCGA-VQ-A91Q-01 9 71986449 71986449 T G FAM189A2 Missense_Mutation p.V16G 0.45 deleterious(0) unknown(0) TCGA-VQ-A91Q-01 9 99698808 99698808 C G NUTM2G Missense_Mutation p.P315R 0.43 deleterious(0.04) probably_damaging(0.961) TCGA-VQ-A91Q-01 X 107977175 107977175 A G IRS4 Silent p.S800S 0.53 TCGA-VQ-A91Q-01 X 135630853 135630853 C T VGLL1 Missense_Mutation p.P107L 0.75 tolerated(0.65) benign(0.085) TCGA-VQ-A91Q-01 X 150889935 150889935 C T FATE1 Silent p.Y101Y 0.20 TCGA-VQ-A91Q-01 X 27839810 27839810 A T MAGEB10 Missense_Mutation p.K129N 0.72 deleterious(0) probably_damaging(0.995) TCGA-VQ-A91Q-01 X 84525768 84525768 A G ZNF711 Missense_Mutation p.D407G 0.71 tolerated(0.42) possibly_damaging(0.599) TCGA-VQ-A91Q-01 Y 21894488 21894488 G C KDM5D Missense_Mutation p.C358W 0.58 deleterious(0) probably_damaging(1) TCGA-VQ-A91S-01 10 105006050 105006050 G A RPEL1 Silent p.E99E 0.29 TCGA-VQ-A91S-01 10 121285571 121285572 - T RGS10 Frame_Shift_Ins p.D76Efs*3 0.27 TCGA-VQ-A91S-01 10 134626332 134626332 C T TTC40 Silent p.L2486L 0.08 TCGA-VQ-A91S-01 10 17747722 17747722 T C STAM Silent p.S397S 0.33 TCGA-VQ-A91S-01 10 43089168 43089168 C G ZNF33B Missense_Mutation p.E410D 0.29 deleterious(0.01) possibly_damaging(0.546) TCGA-VQ-A91S-01 10 43615641 43615641 A C RET Missense_Mutation p.K907T 0.26 deleterious(0) probably_damaging(0.994) TCGA-VQ-A91S-01 10 70992559 70992559 A C HKDC1 Missense_Mutation p.K89T 0.34 tolerated(0.07) benign(0.028) TCGA-VQ-A91S-01 10 7239528 7239528 G A SFMBT2 Silent p.C560C 0.33 TCGA-VQ-A91S-01 10 72468481 72468481 C T ADAMTS14 Missense_Mutation p.R273C 0.29 deleterious(0) probably_damaging(0.998) TCGA-VQ-A91S-01 10 75568004 75568004 A C NDST2 Missense_Mutation p.L48W 0.31 deleterious_low_confidence(0.05) possibly_damaging(0.908) TCGA-VQ-A91S-01 10 858942 858943 CC G LARP4B Frame_Shift_Del p.G714Rfs*39 0.13 TCGA-VQ-A91S-01 10 87966235 87966235 C T GRID1 Missense_Mutation p.G136S 0.24 tolerated(0.16) benign(0.371) TCGA-VQ-A91S-01 10 90537861 90537861 C G LIPN Silent p.A353A 0.21 TCGA-VQ-A91S-01 10 93602122 93602122 G C TNKS2 Missense_Mutation p.R678T 0.09 deleterious(0.02) probably_damaging(1) TCGA-VQ-A91S-01 11 102567110 102567110 A G MMP27 Silent p.F298F 0.05 TCGA-VQ-A91S-01 11 102567217 102567217 G A MMP27 Silent p.L263L 0.25 TCGA-VQ-A91S-01 11 105850543 105850543 G A GRIA4 3'UTR 0.25 TCGA-VQ-A91S-01 11 123754797 123754797 A C TMEM225 Missense_Mutation p.F150V 0.41 tolerated(0.07) possibly_damaging(0.849) TCGA-VQ-A91S-01 11 13733310 13733310 G C FAR1 Splice_Site p.X242_splice 0.09 TCGA-VQ-A91S-01 11 20124861 20124861 G A NAV2 Missense_Mutation p.D2219N 0.19 deleterious(0.03) benign(0.375) TCGA-VQ-A91S-01 11 3707316 3707316 G A NUP98 Silent p.T1521T 0.20 TCGA-VQ-A91S-01 11 49598288 49598288 T G RP11-707M1.1 RNA 0.16 TCGA-VQ-A91S-01 11 55136341 55136341 A - OR4A15 Frame_Shift_Del p.K328Nfs*7 0.14 TCGA-VQ-A91S-01 11 55322525 55322525 T G OR4C15 Missense_Mutation p.F248C 0.23 deleterious_low_confidence(0) possibly_damaging(0.843) TCGA-VQ-A91S-01 11 55905124 55905124 T C OR8J3 Missense_Mutation p.Q24R 0.20 deleterious(0.03) probably_damaging(0.995) TCGA-VQ-A91S-01 11 55999981 55999981 A C OR5T2 Silent p.S227S 0.21 TCGA-VQ-A91S-01 11 56237478 56237478 A C OR5M3 Missense_Mutation p.F166V 0.40 deleterious(0) probably_damaging(0.997) TCGA-VQ-A91S-01 11 61405001 61405001 G A RPLP0P2 RNA 0.19 TCGA-VQ-A91S-01 11 64056828 64056828 G A GPR137 Silent p.P473P 0.17 TCGA-VQ-A91S-01 11 64368231 64368231 G C SLC22A12 Missense_Mutation p.Q473H 0.11 tolerated(0.12) probably_damaging(0.975) TCGA-VQ-A91S-01 11 73584478 73584478 G A COA4 Intron 0.53 TCGA-VQ-A91S-01 11 75277834 75277834 T A SERPINH1 Missense_Mutation p.V147E 0.15 deleterious(0) probably_damaging(0.98) TCGA-VQ-A91S-01 11 88780911 88780911 G T GRM5 Missense_Mutation p.H44N 0.16 deleterious(0) probably_damaging(0.998) TCGA-VQ-A91S-01 12 10205299 10205299 G C CLEC9A Missense_Mutation p.E5Q 0.31 deleterious(0.01) possibly_damaging(0.773) TCGA-VQ-A91S-01 12 113728782 113728782 C T TPCN1 Silent p.V718V 0.21 TCGA-VQ-A91S-01 12 120636539 120636539 C G RPLP0 Missense_Mutation p.D157H 0.18 deleterious(0.01) possibly_damaging(0.493) TCGA-VQ-A91S-01 12 125497155 125497155 G A BRI3BP Missense_Mutation p.E97K 0.19 deleterious(0.04) benign(0.035) TCGA-VQ-A91S-01 12 126138966 126138966 T G TMEM132B Missense_Mutation p.F983V 0.21 tolerated(0.08) benign(0.281) TCGA-VQ-A91S-01 12 130884290 130884290 T G RIMBP2 Missense_Mutation p.E1022D 0.30 tolerated(0.11) benign(0.109) TCGA-VQ-A91S-01 12 21196487 21196487 A T SLCO1B7 Missense_Mutation p.K269I 0.30 deleterious(0.05) benign(0.022) TCGA-VQ-A91S-01 12 21970208 21970208 A C ABCC9 Missense_Mutation p.L1269V 0.26 tolerated(0.08) benign(0.138) TCGA-VQ-A91S-01 12 40713863 40713863 T G LRRK2 Missense_Mutation p.F1634C 0.24 deleterious(0.04) probably_damaging(0.976) TCGA-VQ-A91S-01 12 41900377 41900378 TG A PDZRN4 Nonsense_Mutation p.Y321* 0.24 TCGA-VQ-A91S-01 12 42858865 42858865 G A PRICKLE1 Missense_Mutation p.S324L 0.12 deleterious(0) probably_damaging(0.998) TCGA-VQ-A91S-01 12 5154080 5154080 C G KCNA5 Missense_Mutation p.S256W 0.29 deleterious(0) probably_damaging(1) TCGA-VQ-A91S-01 12 54367099 54367099 G A HOXC11 Missense_Mutation p.R25Q 0.31 deleterious(0.02) probably_damaging(0.961) TCGA-VQ-A91S-01 12 64858188 64858188 T C TBK1 Silent p.P101P 0.10 TCGA-VQ-A91S-01 12 7177501 7177501 C G C1S Missense_Mutation p.P538R 0.45 deleterious(0.02) possibly_damaging(0.718) TCGA-VQ-A91S-01 12 72388269 72388269 A C TPH2 Missense_Mutation p.K331T 0.27 tolerated(0.24) benign(0.287) TCGA-VQ-A91S-01 12 78582395 78582395 G T NAV3 Missense_Mutation p.V1943L 0.22 tolerated(0.14) benign(0.062) TCGA-VQ-A91S-01 12 78604311 78604311 T G NAV3 3'UTR 0.24 TCGA-VQ-A91S-01 12 7867870 7867870 A C DPPA3 Missense_Mutation p.E58D 0.18 tolerated(0.11) probably_damaging(0.971) TCGA-VQ-A91S-01 12 79611436 79611436 A C SYT1 Missense_Mutation p.K46T 0.17 tolerated(0.07) possibly_damaging(0.597) TCGA-VQ-A91S-01 12 90028575 90028575 T C ATP2B1 Missense_Mutation p.K256R 0.34 tolerated(0.21) benign(0.009) TCGA-VQ-A91S-01 12 9227376 9227376 T G A2M Missense_Mutation p.N1179T 0.33 tolerated(0.05) benign(0.056) TCGA-VQ-A91S-01 12 95485538 95485538 C T FGD6 Silent p.L1265L 0.28 TCGA-VQ-A91S-01 13 100807278 100807278 C G PCCA Missense_Mutation p.P116A 0.18 tolerated(0.18) benign(0.038) TCGA-VQ-A91S-01 13 102368031 102368031 T C ITGBL1 3'UTR 0.26 TCGA-VQ-A91S-01 13 103698508 103698508 C T SLC10A2 Missense_Mutation p.G341E 0.26 tolerated(0.51) benign(0.002) TCGA-VQ-A91S-01 13 111290950 111290950 C T CARKD 3'UTR 0.31 TCGA-VQ-A91S-01 13 111995213 111995213 A C TEX29 Missense_Mutation p.K117T 0.21 tolerated(0.25) possibly_damaging(0.607) TCGA-VQ-A91S-01 13 114193757 114193757 A T TMCO3 Missense_Mutation p.E542V 0.22 deleterious(0.01) benign(0.159) TCGA-VQ-A91S-01 13 25914196 25914196 C T NUPL1 Missense_Mutation p.S575F 0.17 deleterious(0) probably_damaging(0.966) TCGA-VQ-A91S-01 13 27246054 27246054 T A WASF3 Nonsense_Mutation p.Y156* 0.20 TCGA-VQ-A91S-01 13 31480899 31480899 C A MEDAG Missense_Mutation p.Q83K 0.29 tolerated(0.22) benign(0.006) TCGA-VQ-A91S-01 13 35615261 35615261 A T NBEA Missense_Mutation p.Q162H 0.24 tolerated(0.35) possibly_damaging(0.62) TCGA-VQ-A91S-01 13 39265865 39265865 A T FREM2 Missense_Mutation p.R1462W 0.20 deleterious(0) probably_damaging(0.958) TCGA-VQ-A91S-01 13 44456363 44456363 C G LACC1 Missense_Mutation p.S202C 0.25 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91S-01 13 51530600 51530600 G C RNASEH2B Missense_Mutation p.G310A 0.16 tolerated_low_confidence(0.05) benign(0.197) TCGA-VQ-A91S-01 13 73409467 73409467 T - PIBF1 Frame_Shift_Del p.R396Efs*30 0.10 TCGA-VQ-A91S-01 13 76055723 76055723 C T TBC1D4 Missense_Mutation p.E61K 0.29 deleterious(0) benign(0.302) TCGA-VQ-A91S-01 13 79233238 79233238 C T RNF219 Silent p.Q6Q 0.24 TCGA-VQ-A91S-01 14 105405284 105405284 G A AHNAK2 Missense_Mutation p.R5502W 0.14 probably_damaging(0.976) TCGA-VQ-A91S-01 14 106622096 106622096 T G IGHV3-16 Missense_Mutation p.N50T 0.19 tolerated_low_confidence(0.09) benign(0.014) TCGA-VQ-A91S-01 14 106815981 106815981 A C IGHV3-33 Missense_Mutation p.V31G 0.27 deleterious_low_confidence(0.02) benign(0.308) TCGA-VQ-A91S-01 14 22192484 22192484 A C TRAV3 Missense_Mutation p.N87H 0.34 tolerated(0.08) possibly_damaging(0.777) TCGA-VQ-A91S-01 14 22392751 22392751 A C TRAV14DV4 Silent p.R92R 0.28 TCGA-VQ-A91S-01 14 23847889 23847889 C A CMTM5 Intron 0.16 TCGA-VQ-A91S-01 14 45403617 45403617 A C KLHL28 Silent p.T348T 0.28 TCGA-VQ-A91S-01 14 78161168 78161168 G C ALKBH1 Missense_Mutation p.S123C 0.17 deleterious(0.04) benign(0.03) TCGA-VQ-A91S-01 14 94711989 94711989 C A PPP4R4 Missense_Mutation p.S470R 0.21 tolerated(0.16) benign(0.299) TCGA-VQ-A91S-01 15 102182648 102182648 T C TM2D3 3'UTR 0.17 TCGA-VQ-A91S-01 15 102346493 102346493 G A OR4F6 Missense_Mutation p.E191K 0.19 deleterious_low_confidence(0.01) benign(0.022) TCGA-VQ-A91S-01 15 83520956 83520956 T C HOMER2 Missense_Mutation p.K245E 0.23 tolerated(0.29) benign(0.027) TCGA-VQ-A91S-01 15 84611470 84611470 A C ADAMTSL3 Missense_Mutation p.K747T 0.23 deleterious(0) probably_damaging(0.967) TCGA-VQ-A91S-01 16 15829327 15829327 C G MYH11 Missense_Mutation p.R1141S 0.23 benign(0.09) TCGA-VQ-A91S-01 16 22122272 22122272 G T VWA3A Missense_Mutation p.A216S 0.19 tolerated(0.48) benign(0.027) TCGA-VQ-A91S-01 16 2983131 2983131 G C FLYWCH1 Missense_Mutation p.G265A 0.25 tolerated(0.16) benign(0.06) TCGA-VQ-A91S-01 16 3727701 3727701 G C TRAP1 Intron 0.12 TCGA-VQ-A91S-01 16 425185 425185 C T TMEM8A Missense_Mutation p.E463K 0.20 deleterious(0.01) possibly_damaging(0.883) TCGA-VQ-A91S-01 16 4745004 4745004 G T NUDT16L1 Missense_Mutation p.V154F 0.26 tolerated(0.06) benign(0.363) TCGA-VQ-A91S-01 16 58149343 58149343 C T C16orf80 Missense_Mutation p.V99M 0.33 tolerated(0.23) benign(0.141) TCGA-VQ-A91S-01 16 75269035 75269035 C T BCAR1 Missense_Mutation p.E634K 0.58 deleterious(0) probably_damaging(0.998) TCGA-VQ-A91S-01 16 81151013 81151013 C T PKD1L2 RNA 0.63 TCGA-VQ-A91S-01 17 16455691 16455691 C T ZNF287 Missense_Mutation p.E589K 0.27 tolerated(0.08) probably_damaging(0.989) TCGA-VQ-A91S-01 17 18043848 18043871 CTCCAGCCATGCCCCACAGGCTGC - MYO15A In_Frame_Del p.S1744_A1751del 0.27 TCGA-VQ-A91S-01 17 18673354 18673368 TGGCAGAGGTGATCC - FBXW10 In_Frame_Del p.G655_P659del 0.17 TCGA-VQ-A91S-01 17 25909947 25909947 C T KSR1 Missense_Mutation p.H129Y 0.05 tolerated(0.37) benign(0.282) TCGA-VQ-A91S-01 17 26518118 26518118 A C NLK Silent p.T436T 0.27 TCGA-VQ-A91S-01 17 28772976 28772976 A G CPD Silent p.K937K 0.26 TCGA-VQ-A91S-01 17 39845316 39845316 C G EIF1 Missense_Mutation p.S9C 0.03 deleterious(0) possibly_damaging(0.763) TCGA-VQ-A91S-01 17 39921286 39921286 G A JUP Missense_Mutation p.L315F 0.06 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91S-01 17 40024099 40024101 ATC - ACLY In_Frame_Del p.D1090del 0.10 TCGA-VQ-A91S-01 17 40042532 40042532 C T ACLY Silent p.K635K 0.75 TCGA-VQ-A91S-01 17 41004275 41004275 T C AOC3 Silent p.P305P 0.24 TCGA-VQ-A91S-01 17 56291224 56291224 G C MKS1 Silent p.G217G 0.11 TCGA-VQ-A91S-01 17 58234015 58234017 CTT - CA4 In_Frame_Del p.F72del 0.20 TCGA-VQ-A91S-01 17 58256706 58256706 C G USP32 Silent p.L1575L 0.37 TCGA-VQ-A91S-01 17 67146151 67146151 G A ABCA10 Missense_Mutation p.S1484F 0.18 deleterious(0.01) probably_damaging(0.987) TCGA-VQ-A91S-01 17 74287345 74287345 A G QRICH2 Missense_Mutation p.F989L 0.35 tolerated(0.81) benign(0.002) TCGA-VQ-A91S-01 17 7577144 7577144 A G TP53 Missense_Mutation p.L265P 0.62 deleterious(0) probably_damaging(1) TCGA-VQ-A91S-01 18 42533017 42533017 G A SETBP1 Missense_Mutation p.D1238N 0.24 deleterious(0) probably_damaging(0.997) TCGA-VQ-A91S-01 18 6985348 6985348 G T LAMA1 Missense_Mutation p.H1850N 0.07 tolerated(0.38) benign(0.045) TCGA-VQ-A91S-01 19 10088112 10088112 C A COL5A3 Missense_Mutation p.G1055W 0.27 probably_damaging(1) TCGA-VQ-A91S-01 19 14854437 14854437 G A EMR2 Silent p.L781L 0.29 TCGA-VQ-A91S-01 19 16275669 16275669 T C CIB3 Silent p.K134K 0.22 TCGA-VQ-A91S-01 19 17449388 17449388 C T GTPBP3 Silent p.F143F 0.16 TCGA-VQ-A91S-01 19 18779859 18779859 A G KLHL26 Missense_Mutation p.E551G 0.17 deleterious(0) probably_damaging(1) TCGA-VQ-A91S-01 19 19260219 19260219 T G MEF2B Missense_Mutation p.K25T 0.21 deleterious(0) probably_damaging(0.997) TCGA-VQ-A91S-01 19 21299961 21299961 G T ZNF714 Missense_Mutation p.R164I 0.14 tolerated(0.24) benign(0.001) TCGA-VQ-A91S-01 19 36037881 36037881 G A TMEM147 Missense_Mutation p.E127K 0.23 deleterious(0.01) probably_damaging(0.989) TCGA-VQ-A91S-01 19 36321755 36321755 T G NPHS1 Missense_Mutation p.E1195D 0.18 tolerated(0.25) benign(0.012) TCGA-VQ-A91S-01 19 40901603 40901603 C T PRX Missense_Mutation p.E886K 0.14 tolerated(0.97) benign(0) TCGA-VQ-A91S-01 19 42703942 42703942 C G DEDD2 Missense_Mutation p.G210A 0.23 tolerated(0.1) benign(0.038) TCGA-VQ-A91S-01 19 55221917 55221917 G - AC098784.2 3'Flank 0.22 TCGA-VQ-A91S-01 19 57286725 57286725 A G ZIM2 Silent p.D305D 0.22 TCGA-VQ-A91S-01 19 57325595 57325595 T G PEG3 Missense_Mutation p.E1405D 0.26 tolerated(0.09) possibly_damaging(0.872) TCGA-VQ-A91S-01 19 58565076 58565076 C T ZSCAN1 Missense_Mutation p.A295V 0.10 tolerated(0.05) benign(0.011) TCGA-VQ-A91S-01 19 5867533 5867533 C A FUT5 Missense_Mutation p.M68I 0.31 tolerated(0.2) benign(0.002) TCGA-VQ-A91S-01 19 58849963 58849963 T C ZSCAN22 Silent p.D249D 0.25 TCGA-VQ-A91S-01 19 9061892 9061892 G T MUC16 Silent p.T8518T 0.24 TCGA-VQ-A91S-01 19 9071824 9071824 T G MUC16 Missense_Mutation p.S5208R 0.24 unknown(0) TCGA-VQ-A91S-01 1 10719910 10719910 G T CASZ1 Missense_Mutation p.P397T 0.12 deleterious_low_confidence(0) benign(0.037) TCGA-VQ-A91S-01 1 12855879 12855879 A C PRAMEF1 Missense_Mutation p.N387H 0.11 deleterious(0) probably_damaging(0.919) TCGA-VQ-A91S-01 1 147096247 147096247 A C BCL9 Missense_Mutation p.E1256D 0.22 tolerated(0.4) benign(0.002) TCGA-VQ-A91S-01 1 152733118 152733118 C T KPRP Missense_Mutation p.R352C 0.33 tolerated(0.07) possibly_damaging(0.809) TCGA-VQ-A91S-01 1 152975860 152975860 T G SPRR3 Missense_Mutation p.F122V 0.43 tolerated(0.29) benign(0.039) TCGA-VQ-A91S-01 1 155887332 155887346 CTCTGTGAATCGTCT - KIAA0907 In_Frame_Del p.R462_E466del 0.21 TCGA-VQ-A91S-01 1 158581033 158581033 C T SPTA1 3'UTR 0.43 TCGA-VQ-A91S-01 1 158632679 158632679 A C SPTA1 Silent p.P759P 0.23 TCGA-VQ-A91S-01 1 159505260 159505260 T C OR10J5 Missense_Mutation p.I180V 0.37 tolerated(0.33) benign(0.077) TCGA-VQ-A91S-01 1 159796561 159796561 G C SLAMF8 5'UTR 0.37 TCGA-VQ-A91S-01 1 159799885 159799885 C A SLAMF8 Silent p.L90L 0.33 TCGA-VQ-A91S-01 1 16458678 16458678 C G EPHA2 Missense_Mutation p.V736L 0.25 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91S-01 1 164815927 164815927 G A PBX1 3'UTR 0.27 TCGA-VQ-A91S-01 1 179600016 179600016 T A TDRD5 Missense_Mutation p.L363I 0.18 tolerated(0.17) possibly_damaging(0.688) TCGA-VQ-A91S-01 1 182617320 182617320 C T RGS8 Silent p.K122K 0.11 TCGA-VQ-A91S-01 1 186266006 186266006 C T PRG4 5'UTR 0.24 TCGA-VQ-A91S-01 1 186319375 186319375 G C TPR Missense_Mutation p.S919C 0.33 possibly_damaging(0.7) TCGA-VQ-A91S-01 1 196977868 196977868 A T CFHR5 3'UTR 0.40 TCGA-VQ-A91S-01 1 200534721 200534721 A C KIF14 Missense_Mutation p.I1246M 0.30 deleterious(0.03) possibly_damaging(0.881) TCGA-VQ-A91S-01 1 200534724 200534724 C G KIF14 Missense_Mutation p.L1245F 0.28 deleterious(0.04) possibly_damaging(0.701) TCGA-VQ-A91S-01 1 206942059 206942059 G A IL10 Silent p.G153G 0.23 TCGA-VQ-A91S-01 1 209799332 209799332 C T LAMB3 Missense_Mutation p.C546Y 0.30 deleterious(0) probably_damaging(1) TCGA-VQ-A91S-01 1 213061339 213061339 C T FLVCR1 Missense_Mutation p.L435F 0.39 deleterious(0.02) possibly_damaging(0.838) TCGA-VQ-A91S-01 1 222801097 222801112 CCTGAACCAGTAGAAG - MIA3 Frame_Shift_Del p.E180Tfs*54 0.24 TCGA-VQ-A91S-01 1 235295183 235295183 C T RBM34 Missense_Mutation p.V380I 0.31 tolerated(0.18) benign(0.003) TCGA-VQ-A91S-01 1 247319876 247319876 T C ZNF124 Missense_Mutation p.K288E 0.29 tolerated(0.33) benign(0.019) TCGA-VQ-A91S-01 1 248201577 248201577 A C OR2L2 Missense_Mutation p.N3T 0.40 tolerated(0.3) benign(0.006) TCGA-VQ-A91S-01 1 248309375 248309375 A T OR2M5 Missense_Mutation p.K309M 0.16 deleterious(0.01) probably_damaging(0.928) TCGA-VQ-A91S-01 1 248569760 248569760 T G OR2T1 Silent p.L155L 0.38 TCGA-VQ-A91S-01 1 27175190 27175190 C G ZDHHC18 Silent p.T196T 0.28 TCGA-VQ-A91S-01 1 34046491 34046491 C A CSMD2 Nonsense_Mutation p.G2419* 0.32 TCGA-VQ-A91S-01 1 34663358 34663358 G T C1orf94 Missense_Mutation p.G285W 0.19 deleterious(0) probably_damaging(0.998) TCGA-VQ-A91S-01 1 54262635 54262635 A C NDC1 Missense_Mutation p.Y469D 0.30 deleterious(0.03) possibly_damaging(0.493) TCGA-VQ-A91S-01 1 6214781 6214781 G A CHD5 Silent p.V228V 0.13 TCGA-VQ-A91S-01 1 62740331 62740331 C T KANK4 Missense_Mutation p.E149K 0.28 deleterious(0.04) benign(0.21) TCGA-VQ-A91S-01 1 6530572 6530572 C T PLEKHG5 Silent p.V637V 0.21 TCGA-VQ-A91S-01 1 67861440 67861440 C A IL12RB2 Missense_Mutation p.P753T 0.14 tolerated(0.33) benign(0.005) TCGA-VQ-A91S-01 1 78279492 78279492 T C FAM73A Silent p.D237D 0.24 TCGA-VQ-A91S-01 1 78959154 78959154 T C PTGFR Silent p.S242S 0.33 TCGA-VQ-A91S-01 20 13107335 13107335 T G SPTLC3 Missense_Mutation p.L417R 0.13 deleterious(0.02) benign(0.353) TCGA-VQ-A91S-01 20 20071494 20071494 A G C20orf26 Silent p.E191E 0.17 TCGA-VQ-A91S-01 20 2820456 2820456 C T PCED1A Missense_Mutation p.V35M 0.08 deleterious(0.02) possibly_damaging(0.906) TCGA-VQ-A91S-01 20 30310108 30310108 C G BCL2L1 5'UTR 0.15 TCGA-VQ-A91S-01 20 35545436 35545436 C T SAMHD1 Missense_Mutation p.R290H 0.13 deleterious(0) probably_damaging(0.981) TCGA-VQ-A91S-01 20 37384592 37384592 G C ACTR5 Missense_Mutation p.Q362H 0.09 tolerated(0.56) benign(0.003) TCGA-VQ-A91S-01 20 43547895 43547895 G A PABPC1L Missense_Mutation p.E239K 0.13 deleterious(0.04) benign(0.392) TCGA-VQ-A91S-01 20 47887061 47887061 C G ZNFX1 Missense_Mutation p.V430L 0.19 deleterious(0.01) possibly_damaging(0.791) TCGA-VQ-A91S-01 20 57568750 57568750 C T NELFCD Silent p.V522V 0.21 TCGA-VQ-A91S-01 20 62737977 62737977 T A NPBWR2 Missense_Mutation p.I70F 0.08 deleterious(0) possibly_damaging(0.643) TCGA-VQ-A91S-01 20 858965 858965 G A ANGPT4 Silent p.F353F 0.29 TCGA-VQ-A91S-01 21 11098794 11098794 C T BAGE2 RNA 0.24 TCGA-VQ-A91S-01 21 27484427 27484427 G C APP Missense_Mutation p.P32A 0.28 deleterious(0.03) unknown(0) TCGA-VQ-A91S-01 21 41725492 41725492 C A DSCAM Silent p.L278L 0.22 TCGA-VQ-A91S-01 21 43838572 43838572 T A UBASH3A Silent p.G300G 0.25 TCGA-VQ-A91S-01 21 47531408 47531408 C A COL6A2 Nonsense_Mutation p.C6* 0.29 TCGA-VQ-A91S-01 22 21138453 21138453 C A SERPIND1 Missense_Mutation p.H361Q 0.05 tolerated(0.2) benign(0.203) TCGA-VQ-A91S-01 22 21989348 21989348 C G CCDC116 Silent p.G332G 0.25 TCGA-VQ-A91S-01 22 30660202 30660202 G T OSM Silent p.I143I 0.50 TCGA-VQ-A91S-01 22 38121828 38121829 - CAGACA TRIOBP In_Frame_Ins p.D1090_T1091dup 0.10 TCGA-VQ-A91S-01 22 39085102 39085102 A G JOSD1 Missense_Mutation p.M116T 0.13 tolerated(0.54) benign(0.001) TCGA-VQ-A91S-01 22 44319891 44319891 C A PNPLA3 Missense_Mutation p.P34T 0.18 deleterious(0) probably_damaging(1) TCGA-VQ-A91S-01 22 46656664 46656664 G T PKDREJ Silent p.T852T 0.31 TCGA-VQ-A91S-01 2 107040103 107040103 T G RGPD3 Missense_Mutation p.K1440N 0.18 deleterious(0.04) probably_damaging(0.995) TCGA-VQ-A91S-01 2 11347924 11347943 TGCTTTTCTGACATTTTTAG - ROCK2 Frame_Shift_Del p.L820Vfs*6 0.31 TCGA-VQ-A91S-01 2 142238097 142238097 C T LRP1B Missense_Mutation p.E71K 0.26 benign(0) TCGA-VQ-A91S-01 2 168102105 168102105 A T XIRP2 Missense_Mutation p.E1401D 0.41 benign(0.024) TCGA-VQ-A91S-01 2 170863561 170863561 G C UBR3 Missense_Mutation p.R1364T 0.54 deleterious(0) probably_damaging(0.985) TCGA-VQ-A91S-01 2 174081943 174081943 T C MLTK Missense_Mutation p.W318R 0.23 tolerated(0.69) probably_damaging(0.999) TCGA-VQ-A91S-01 2 187627018 187627018 T G FAM171B Missense_Mutation p.L650R 0.67 deleterious(0.05) probably_damaging(1) TCGA-VQ-A91S-01 2 198273230 198273230 G C SF3B1 Missense_Mutation p.P327R 0.36 deleterious(0.03) probably_damaging(0.996) TCGA-VQ-A91S-01 2 204354396 204354396 C G RAPH1 Missense_Mutation p.A215P 0.26 probably_damaging(0.977) TCGA-VQ-A91S-01 2 210650814 210650814 G A UNC80 Missense_Mutation p.A209T 0.83 probably_damaging(0.943) TCGA-VQ-A91S-01 2 233712176 233712176 G A GIGYF2 Silent p.E1214E 0.30 TCGA-VQ-A91S-01 2 234602481 234602481 C G UGT1A6 Missense_Mutation p.I277M 0.09 tolerated(0.05) benign(0.438) TCGA-VQ-A91S-01 2 29294172 29294172 T A C2orf71 Nonsense_Mutation p.R986* 0.18 TCGA-VQ-A91S-01 2 53941621 53941621 C T ASB3 Missense_Mutation p.D329N 0.17 deleterious(0.03) benign(0.04) TCGA-VQ-A91S-01 2 70315964 70315964 C A PCBP1 3'UTR 0.45 TCGA-VQ-A91S-01 2 85981899 85981899 C T ATOH8 Missense_Mutation p.S196L 0.07 deleterious(0) possibly_damaging(0.628) TCGA-VQ-A91S-01 3 108308159 108308159 A C KIAA1524 Missense_Mutation p.S22A 0.15 deleterious(0.01) benign(0.325) TCGA-VQ-A91S-01 3 120941878 120941878 C T STXBP5L Silent p.L329L 0.23 TCGA-VQ-A91S-01 3 137958347 137958347 G C ARMC8 Missense_Mutation p.D258H 0.21 tolerated(0.1) benign(0.01) TCGA-VQ-A91S-01 3 169998181 169998186 ATGATG - PRKCI In_Frame_Del p.D292_D293del 0.17 TCGA-VQ-A91S-01 3 178546115 178546115 A C KCNMB2 Missense_Mutation p.K126T 0.22 tolerated(0.28) benign(0.005) TCGA-VQ-A91S-01 3 193159335 193159335 T G ATP13A4 Silent p.R787R 0.26 TCGA-VQ-A91S-01 3 24206643 24206643 T A THRB Intron 0.20 TCGA-VQ-A91S-01 3 38765004 38765004 T C SCN10A Missense_Mutation p.D1090G 0.33 deleterious(0.01) benign(0.181) TCGA-VQ-A91S-01 3 49273987 49273987 G A CCDC36 Silent p.K21K 0.25 TCGA-VQ-A91S-01 3 53911772 53911772 A G ACTR8 Missense_Mutation p.S138P 0.34 tolerated(0.09) possibly_damaging(0.485) TCGA-VQ-A91S-01 3 57132303 57132303 G A IL17RD Silent p.I476I 0.25 TCGA-VQ-A91S-01 3 64084889 64084889 T G PRICKLE2 Silent p.L791L 0.18 TCGA-VQ-A91S-01 4 102951259 102951259 T G BANK1 Silent p.T579T 0.17 TCGA-VQ-A91S-01 4 109674141 109674141 T C ETNPPL Silent p.G176G 0.29 TCGA-VQ-A91S-01 4 114302628 114302628 A C ANK2 3'UTR 0.21 TCGA-VQ-A91S-01 4 114824209 114824209 G C ARSJ Missense_Mutation p.L341V 0.15 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91S-01 4 121774675 121774675 T G PRDM5 Missense_Mutation p.E66D 0.24 tolerated(0.3) benign(0.006) TCGA-VQ-A91S-01 4 122853895 122853895 G A TRPC3 Missense_Mutation p.A173V 0.27 tolerated(0.33) possibly_damaging(0.686) TCGA-VQ-A91S-01 4 155156244 155156244 A C DCHS2 Missense_Mutation p.V2732G 0.26 deleterious(0.02) benign(0.093) TCGA-VQ-A91S-01 4 156274364 156274364 T G MAP9 Missense_Mutation p.E503D 0.19 tolerated(0.05) benign(0.333) TCGA-VQ-A91S-01 4 62862063 62862063 T G LPHN3 Silent p.T1029T 0.24 TCGA-VQ-A91S-01 4 66535325 66535325 G A EPHA5 Silent p.L46L 0.31 TCGA-VQ-A91S-01 4 73169774 73169774 G T ADAMTS3 Missense_Mutation p.H762N 0.24 tolerated(0.52) benign(0.006) TCGA-VQ-A91S-01 4 88766518 88766518 A C MEPE Missense_Mutation p.E166D 0.35 tolerated(0.3) benign(0.211) TCGA-VQ-A91S-01 5 112200206 112200206 G C SRP19 Missense_Mutation p.G57A 0.24 deleterious(0) possibly_damaging(0.86) TCGA-VQ-A91S-01 5 114473202 114473202 G A TRIM36 Silent p.L327L 0.33 TCGA-VQ-A91S-01 5 121188023 121188023 A G FTMT Missense_Mutation p.E122G 0.27 deleterious(0) probably_damaging(0.995) TCGA-VQ-A91S-01 5 13876821 13876821 A C DNAH5 Missense_Mutation p.L1123R 0.14 possibly_damaging(0.766) TCGA-VQ-A91S-01 5 140474554 140474554 A C PCDHB2 Missense_Mutation p.E60D 0.37 tolerated_low_confidence(0.1) benign(0.008) TCGA-VQ-A91S-01 5 140516869 140516869 C T PCDHB5 Missense_Mutation p.A618V 0.22 deleterious_low_confidence(0) benign(0.274) TCGA-VQ-A91S-01 5 140751508 140751508 C T PCDHGB3 Missense_Mutation p.A516V 0.30 deleterious(0.01) possibly_damaging(0.696) TCGA-VQ-A91S-01 5 140773036 140773036 A C PCDHGA8 Missense_Mutation p.K219T 0.29 deleterious_low_confidence(0.01) benign(0.002) TCGA-VQ-A91S-01 5 146658871 146658871 A G STK32A Missense_Mutation p.Q57R 0.29 tolerated(0.31) possibly_damaging(0.86) TCGA-VQ-A91S-01 5 17354012 17354012 G T CTD-2139B15.2 5'Flank 0.18 TCGA-VQ-A91S-01 5 38959305 38959305 C T RICTOR Missense_Mutation p.A724T 0.06 tolerated(0.23) benign(0.217) TCGA-VQ-A91S-01 5 55088615 55088615 T G DDX4 Silent p.T483T 0.29 TCGA-VQ-A91S-01 5 76128997 76128997 A G F2RL1 Missense_Mutation p.N189D 0.27 tolerated(0.38) benign(0.098) TCGA-VQ-A91S-01 5 95768622 95768622 C A PCSK1 Missense_Mutation p.G42V 0.10 deleterious(0) probably_damaging(1) TCGA-VQ-A91S-01 6 102266330 102266330 A G GRIK2 Missense_Mutation p.N430S 0.15 deleterious(0) possibly_damaging(0.908) TCGA-VQ-A91S-01 6 12125643 12125643 G A HIVEP1 Missense_Mutation p.R1872Q 0.30 tolerated(0.49) benign(0.006) TCGA-VQ-A91S-01 6 125139581 125139581 A C NKAIN2 Missense_Mutation p.K195T 0.22 deleterious(0) probably_damaging(0.997) TCGA-VQ-A91S-01 6 139363948 139363948 G T ABRACL Missense_Mutation p.A52S 0.10 tolerated(0.07) probably_damaging(0.997) TCGA-VQ-A91S-01 6 151674342 151674342 C G AKAP12 Missense_Mutation p.Q1606E 0.35 tolerated(0.24) benign(0.002) TCGA-VQ-A91S-01 6 157256702 157256702 A G ARID1B Missense_Mutation p.S677G 0.21 benign(0.384) TCGA-VQ-A91S-01 6 157256704 157256704 T G ARID1B Missense_Mutation p.S677R 0.24 probably_damaging(0.994) TCGA-VQ-A91S-01 6 27840978 27840978 C G HIST1H4L Nonstop_Mutation p.*104Sext*? 0.10 TCGA-VQ-A91S-01 6 32138403 32138403 G A AGPAT1 Intron 0.30 TCGA-VQ-A91S-01 6 39869229 39869229 G A DAAM2 Missense_Mutation p.R988Q 0.27 deleterious(0.03) benign(0.387) TCGA-VQ-A91S-01 6 43307320 43307320 G C ZNF318 Missense_Mutation p.I1472M 0.28 benign(0.317) TCGA-VQ-A91S-01 6 52369467 52369467 A C TRAM2 Missense_Mutation p.Y321D 0.18 tolerated(0.21) benign(0.136) TCGA-VQ-A91S-01 6 56044859 56044859 A T COL21A1 Missense_Mutation p.F53I 0.13 deleterious(0) probably_damaging(1) TCGA-VQ-A91S-01 6 56471167 56471167 G T DST Intron 0.23 TCGA-VQ-A91S-01 6 74345112 74345112 C G SLC17A5 Missense_Mutation p.R271T 0.15 tolerated(0.48) benign(0.009) TCGA-VQ-A91S-01 6 76023852 76023852 A G FILIP1 Missense_Mutation p.Y566H 0.18 tolerated(0.37) benign(0.109) TCGA-VQ-A91S-01 6 86257073 86257073 A C SNX14 Missense_Mutation p.L319V 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A91S-01 6 90089999 90089999 T G RRAGD Missense_Mutation p.I178L 0.22 deleterious(0) possibly_damaging(0.505) TCGA-VQ-A91S-01 6 90393599 90393599 T G MDN1 Missense_Mutation p.N3952H 0.20 probably_damaging(0.996) TCGA-VQ-A91S-01 7 100349945 100349945 C A ZAN Silent p.T739T 0.09 TCGA-VQ-A91S-01 7 105615383 105615383 A C CDHR3 Missense_Mutation p.K47T 0.27 tolerated(1) benign(0.007) TCGA-VQ-A91S-01 7 114066729 114066729 C G FOXP2 Missense_Mutation p.Q55E 0.10 deleterious_low_confidence(0.02) probably_damaging(0.989) TCGA-VQ-A91S-01 7 131870136 131870136 T A PLXNA4 Missense_Mutation p.K1027M 0.50 deleterious(0.02) possibly_damaging(0.9) TCGA-VQ-A91S-01 7 142561883 142561883 T G EPHB6 Missense_Mutation p.F109V 0.40 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91S-01 7 142983863 142983863 T C TMEM139 Missense_Mutation p.C198R 0.38 tolerated(0.41) possibly_damaging(0.52) TCGA-VQ-A91S-01 7 25191217 25191217 C T C7orf31 Missense_Mutation p.D228N 0.21 tolerated(0.23) benign(0.084) TCGA-VQ-A91S-01 7 30094417 30094417 C G PLEKHA8 Missense_Mutation p.P297A 0.07 tolerated(0.23) benign(0.001) TCGA-VQ-A91S-01 7 42063095 42063095 T C GLI3 Missense_Mutation p.E490G 0.22 deleterious(0) probably_damaging(0.991) TCGA-VQ-A91S-01 7 47317729 47317729 C G TNS3 Missense_Mutation p.S1428T 0.48 tolerated(0.06) probably_damaging(0.976) TCGA-VQ-A91S-01 7 48559842 48559842 T G ABCA13 Missense_Mutation p.L4668R 0.28 probably_damaging(0.998) TCGA-VQ-A91S-01 7 57188139 57188139 T A ZNF479 Missense_Mutation p.E328V 0.29 deleterious(0) probably_damaging(0.986) TCGA-VQ-A91S-01 7 6485654 6485654 C G DAGLB Missense_Mutation p.L59F 0.16 deleterious(0.03) possibly_damaging(0.799) TCGA-VQ-A91S-01 7 6805342 6805342 C A RSPH10B2 Silent p.S193S 0.32 TCGA-VQ-A91S-01 7 81332048 81332048 C G HGF Missense_Mutation p.C679S 0.29 deleterious(0.01) probably_damaging(1) TCGA-VQ-A91S-01 8 10465315 10465315 G A RP1L1 Missense_Mutation p.S2098L 0.03 unknown(0) TCGA-VQ-A91S-01 8 10583500 10583500 C T SOX7 Silent p.P357P 0.26 TCGA-VQ-A91S-01 8 113599306 113599306 C T CSMD3 Missense_Mutation p.D1292N 0.38 deleterious(0.02) probably_damaging(0.996) TCGA-VQ-A91S-01 8 140631263 140631263 T C KCNK9 Silent p.T121T 0.12 TCGA-VQ-A91S-01 8 144416984 144416984 G A TOP1MT Silent p.L16L 0.26 TCGA-VQ-A91S-01 8 145018031 145018031 A C PLEC Intron 0.09 TCGA-VQ-A91S-01 8 27779750 27779750 C T SCARA5 Missense_Mutation p.R85H 0.18 tolerated(0.08) possibly_damaging(0.488) TCGA-VQ-A91S-01 8 57026261 57026261 T G MOS Missense_Mutation p.K94T 0.06 deleterious(0) possibly_damaging(0.876) TCGA-VQ-A91S-01 8 59764365 59764365 C T TOX Splice_Site p.X138_splice 0.34 TCGA-VQ-A91S-01 8 64099047 64099047 A G YTHDF3 Missense_Mutation p.S159G 0.08 deleterious(0.02) probably_damaging(0.992) TCGA-VQ-A91S-01 8 68930087 68930087 T A PREX2 Missense_Mutation p.L50I 0.43 tolerated(0.18) benign(0.371) TCGA-VQ-A91S-01 8 69017376 69017376 C T PREX2 Intron 0.18 TCGA-VQ-A91S-01 8 72756015 72756015 G A MSC Silent p.S133S 0.38 TCGA-VQ-A91S-01 8 77616761 77616761 A C ZFHX4 Missense_Mutation p.K146N 0.19 possibly_damaging(0.607) TCGA-VQ-A91S-01 8 94797455 94797455 G C TMEM67 Missense_Mutation p.E379D 0.10 tolerated(0.62) benign(0.329) TCGA-VQ-A91S-01 8 99118528 99118528 C T HRSP12 Silent p.L66L 0.06 TCGA-VQ-A91S-01 9 101748241 101748241 C T COL15A1 Silent p.A165A 0.08 TCGA-VQ-A91S-01 9 104319685 104319685 C T RNF20 Missense_Mutation p.S730F 0.17 deleterious(0) probably_damaging(0.912) TCGA-VQ-A91S-01 9 107379774 107379774 A C OR13C9 Missense_Mutation p.F238V 0.29 deleterious(0) benign(0.36) TCGA-VQ-A91S-01 9 110084370 110084370 C T RAD23B Missense_Mutation p.T263I 0.25 tolerated(0.22) benign(0.122) TCGA-VQ-A91S-01 9 116224007 116224007 C A RGS3 Missense_Mutation p.P34H 0.11 deleterious_low_confidence(0) unknown(0) TCGA-VQ-A91S-01 9 117186681 117186681 C A DFNB31 Missense_Mutation p.R450L 0.16 deleterious(0.01) possibly_damaging(0.497) TCGA-VQ-A91S-01 9 125391453 125391466 GCCATGACAGCAAT - OR1B1 Frame_Shift_Del p.I117Sfs*9 0.14 TCGA-VQ-A91S-01 9 129928431 129928431 C G RALGPS1 Missense_Mutation p.Q232E 0.15 deleterious(0.04) possibly_damaging(0.717) TCGA-VQ-A91S-01 9 130656807 130656807 G A ST6GALNAC6 Missense_Mutation p.P94L 0.17 probably_damaging(0.981) TCGA-VQ-A91S-01 9 131909716 131909716 G C PPP2R4 Silent p.L315L 0.05 TCGA-VQ-A91S-01 9 135204860 135204860 T C SETX Missense_Mutation p.T709A 0.10 tolerated(0.38) benign(0.001) TCGA-VQ-A91S-01 9 139686437 139686437 A G TMEM141 Missense_Mutation p.R54G 0.13 deleterious(0) possibly_damaging(0.474) TCGA-VQ-A91S-01 9 140881258 140881258 C T CACNA1B Silent p.P642P 0.31 TCGA-VQ-A91S-01 9 14784435 14784435 C G FREM1 Missense_Mutation p.D1459H 0.11 deleterious(0.02) probably_damaging(0.958) TCGA-VQ-A91S-01 9 15210133 15210133 G T TTC39B Missense_Mutation p.S215Y 0.30 deleterious(0) probably_damaging(0.987) TCGA-VQ-A91S-01 9 39103798 39103798 A G CNTNAP3 Missense_Mutation p.S827P 0.28 deleterious(0) probably_damaging(0.993) TCGA-VQ-A91S-01 9 5968259 5968259 T A KIAA2026 Nonsense_Mutation p.K658* 0.11 TCGA-VQ-A91S-01 9 6014092 6014092 G C RANBP6 Missense_Mutation p.Q506E 0.10 tolerated(0.11) benign(0.065) TCGA-VQ-A91S-01 9 73296484 73296484 A T TRPM3 Missense_Mutation p.F428Y 0.12 deleterious(0.01) probably_damaging(0.99) TCGA-VQ-A91S-01 9 78601059 78601059 C G PCSK5 Missense_Mutation p.I103M 0.24 deleterious(0.03) possibly_damaging(0.534) TCGA-VQ-A91S-01 9 78936440 78936440 C A PCSK5 Silent p.V1302V 0.15 TCGA-VQ-A91S-01 9 86474178 86474178 T G KIF27 Missense_Mutation p.K1015Q 0.12 tolerated(1) benign(0.037) TCGA-VQ-A91S-01 9 98215797 98215797 G A PTCH1 Silent p.L1138L 0.26 TCGA-VQ-A91S-01 X 120181969 120181969 C T GLUD2 Missense_Mutation p.T144M 0.63 tolerated(0.18) benign(0.045) TCGA-VQ-A91S-01 X 148797747 148797747 G A MAGEA11 Missense_Mutation p.E201K 0.36 tolerated(0.18) benign(0.115) TCGA-VQ-A91S-01 X 15332590 15332590 C T ASB11 Intron 0.32 TCGA-VQ-A91S-01 X 54817473 54817473 G C ITIH6 Missense_Mutation p.A138G 0.39 tolerated(0.13) benign(0.207) TCGA-VQ-A91S-01 X 57619698 57619698 C A ZXDB Missense_Mutation p.T406K 0.40 deleterious(0) possibly_damaging(0.599) TCGA-VQ-A91S-01 X 75650737 75650737 T G MAGEE1 Missense_Mutation p.L805R 0.37 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91S-01 X 9622332 9622332 T G TBL1X Missense_Mutation p.F61V 0.26 deleterious(0) possibly_damaging(0.789) TCGA-VQ-A91U-01 10 101293033 101293033 G A NKX2-3 Missense_Mutation p.A49T 0.25 tolerated(0.35) benign(0.001) TCGA-VQ-A91U-01 10 16982237 16982237 C A CUBN Splice_Site p.X1781_splice 0.12 TCGA-VQ-A91U-01 10 51464874 51464874 G A AGAP7 Missense_Mutation p.R528W 0.19 deleterious(0.02) benign(0.043) TCGA-VQ-A91U-01 10 52573626 52573626 G T A1CF Silent p.L446L 0.17 TCGA-VQ-A91U-01 10 56106125 56106125 C T PCDH15 Silent p.P198P 0.16 TCGA-VQ-A91U-01 10 8115988 8115988 G C GATA3 3'UTR 0.12 TCGA-VQ-A91U-01 10 86131958 86131958 G A CCSER2 Missense_Mutation p.D384N 0.41 tolerated(0.25) benign(0.014) TCGA-VQ-A91U-01 10 99116931 99116931 G A RRP12 Nonsense_Mutation p.Q1272* 0.32 TCGA-VQ-A91U-01 11 100126543 100126543 C T CNTN5 Missense_Mutation p.T686M 0.27 deleterious(0) probably_damaging(1) TCGA-VQ-A91U-01 11 101343029 101343029 T C TRPC6 Missense_Mutation p.I682V 0.08 deleterious(0.01) probably_damaging(0.986) TCGA-VQ-A91U-01 11 103027243 103027243 C T DYNC2H1 Silent p.L1291L 0.06 TCGA-VQ-A91U-01 11 103270530 103270530 A T DYNC2H1 Missense_Mutation p.K4106I 0.39 possibly_damaging(0.543) TCGA-VQ-A91U-01 11 1103293 1103293 C A MUC2 Missense_Mutation p.N2681K 0.19 unknown(0) TCGA-VQ-A91U-01 11 11398913 11398913 G A GALNT18 Missense_Mutation p.L265F 0.39 deleterious(0) probably_damaging(1) TCGA-VQ-A91U-01 11 118343382 118343382 G A KMT2A Missense_Mutation p.R503Q 0.08 benign(0.003) TCGA-VQ-A91U-01 11 120989025 120989025 T A TECTA Silent p.L267L 0.21 TCGA-VQ-A91U-01 11 1955618 1955620 GAA - TNNT3 In_Frame_Del p.K145del 0.38 TCGA-VQ-A91U-01 11 22759300 22759300 C T GAS2 Silent p.G153G 0.05 TCGA-VQ-A91U-01 11 30926704 30926704 A G DCDC1 Missense_Mutation p.L1371S 0.25 deleterious(0) possibly_damaging(0.765) TCGA-VQ-A91U-01 11 34192492 34192492 C T ABTB2 Silent p.E508E 0.13 TCGA-VQ-A91U-01 11 35223258 35223258 G C CD44 Missense_Mutation p.W359C 0.14 deleterious(0.05) probably_damaging(0.91) TCGA-VQ-A91U-01 11 46393109 46393109 G A DGKZ Missense_Mutation p.V427M 0.29 deleterious(0) possibly_damaging(0.454) TCGA-VQ-A91U-01 11 56058441 56058441 A C OR8H1 Missense_Mutation p.L33R 0.36 deleterious(0) possibly_damaging(0.84) TCGA-VQ-A91U-01 11 65360589 65360589 G T KCNK7 Missense_Mutation p.P271T 0.16 tolerated(0.53) benign(0.055) TCGA-VQ-A91U-01 11 65650752 65650752 G T CTSW Missense_Mutation p.V293F 0.34 deleterious(0) probably_damaging(0.996) TCGA-VQ-A91U-01 11 66190148 66190148 G A NPAS4 Missense_Mutation p.R145H 0.12 deleterious(0.01) probably_damaging(0.984) TCGA-VQ-A91U-01 11 66638613 66638613 G A PC Silent p.H181H 0.34 TCGA-VQ-A91U-01 11 68341649 68341649 T C PPP6R3 Silent p.T472T 0.32 TCGA-VQ-A91U-01 11 94226014 94226014 A T MRE11A 5'UTR 0.12 TCGA-VQ-A91U-01 12 112369579 112369579 G A TMEM116 Missense_Mutation p.T287M 0.23 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91U-01 12 117187891 117187891 G A RNFT2 Missense_Mutation p.R110H 0.44 tolerated(0.07) probably_damaging(0.996) TCGA-VQ-A91U-01 12 32136202 32136202 C T KIAA1551 Silent p.V771V 0.06 TCGA-VQ-A91U-01 12 52886439 52886439 G A KRT6A Silent p.I178I 0.19 TCGA-VQ-A91U-01 12 53043707 53043707 C T KRT2 Silent p.T284T 0.59 TCGA-VQ-A91U-01 12 58114630 58114630 C T OS9 Missense_Mutation p.R648C 0.17 deleterious(0) probably_damaging(0.957) TCGA-VQ-A91U-01 13 25901602 25901602 A G NUPL1 Silent p.T395T 0.09 TCGA-VQ-A91U-01 13 35644892 35644892 G T NBEA Missense_Mutation p.A492S 0.09 tolerated(0.24) probably_damaging(0.998) TCGA-VQ-A91U-01 13 41766301 41766301 C T KBTBD7 3'UTR 0.14 TCGA-VQ-A91U-01 13 46425635 46425635 G T SIAH3 Missense_Mutation p.L44I 0.07 deleterious_low_confidence(0.01) possibly_damaging(0.492) TCGA-VQ-A91U-01 14 101349302 101349302 G A RTL1 Silent p.Y608Y 0.15 TCGA-VQ-A91U-01 14 103852399 103852399 T G MARK3 Missense_Mutation p.N11K 0.22 deleterious(0.02) benign(0.065) TCGA-VQ-A91U-01 14 39736652 39736652 A C CTAGE5 5'UTR 0.11 TCGA-VQ-A91U-01 14 62551021 62551021 G A SYT16 Silent p.S514S 0.54 TCGA-VQ-A91U-01 14 70990572 70990572 T C ADAM20 Silent p.K351K 0.30 TCGA-VQ-A91U-01 14 77917619 77917619 C T VIPAS39 Missense_Mutation p.R85H 0.23 deleterious(0.02) possibly_damaging(0.591) TCGA-VQ-A91U-01 15 43712793 43712793 C T TP53BP1 Missense_Mutation p.R1464H 0.36 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91U-01 15 77322867 77322867 C T PSTPIP1 Missense_Mutation p.A196V 0.52 tolerated(0.25) benign(0.001) TCGA-VQ-A91U-01 16 11650389 11650389 C A LITAF Silent p.A66A 0.15 TCGA-VQ-A91U-01 16 1469857 1469857 T A C16orf91 3'Flank 0.20 TCGA-VQ-A91U-01 16 21222707 21222707 C A ZP2 Missense_Mutation p.R24S 0.44 deleterious(0.02) benign(0.367) TCGA-VQ-A91U-01 16 321411 321411 C T RGS11 Missense_Mutation p.V246I 0.17 tolerated(0.39) benign(0.002) TCGA-VQ-A91U-01 16 34712319 34712319 G C RP11-80F22.9 RNA 0.28 TCGA-VQ-A91U-01 16 57005921 57005921 G - CETP Frame_Shift_Del p.G226Efs*9 0.17 TCGA-VQ-A91U-01 17 19480750 19480750 G T SLC47A1 Missense_Mutation p.D533Y 0.59 tolerated(0.07) benign(0.234) TCGA-VQ-A91U-01 17 29562682 29562682 C A NF1 Nonsense_Mutation p.Y1254* 0.57 TCGA-VQ-A91U-01 17 40716178 40716178 C G COASY Silent p.R329R 0.50 TCGA-VQ-A91U-01 17 48594759 48594759 C G MYCBPAP Missense_Mutation p.L147V 0.59 deleterious(0.04) possibly_damaging(0.846) TCGA-VQ-A91U-01 17 73929084 73929084 C T FBF1 Silent p.A39A 0.52 TCGA-VQ-A91U-01 17 7574003 7574003 G - TP53 Frame_Shift_Del p.R342Efs*3 0.56 TCGA-VQ-A91U-01 18 22806415 22806415 G C ZNF521 Silent p.L489L 0.14 TCGA-VQ-A91U-01 18 24039679 24039679 C T KCTD1 Missense_Mutation p.V174M 0.40 deleterious(0.01) benign(0.066) TCGA-VQ-A91U-01 18 334825 334825 C G COLEC12 Missense_Mutation p.G578A 0.22 tolerated(0.08) unknown(0) TCGA-VQ-A91U-01 18 48591918 48591918 C T SMAD4 Missense_Mutation p.R361C 0.58 deleterious(0) probably_damaging(1) TCGA-VQ-A91U-01 18 65180320 65180320 C T DSEL Missense_Mutation p.S519N 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-VQ-A91U-01 19 15276326 15276326 T C NOTCH3 Missense_Mutation p.I1890V 0.52 deleterious(0.05) benign(0.043) TCGA-VQ-A91U-01 19 20188895 20188895 G T ZNF90 5'UTR 0.50 TCGA-VQ-A91U-01 19 38954485 38954485 G A RYR1 Silent p.T927T 0.69 TCGA-VQ-A91U-01 19 4047794 4047794 G A ZBTB7A Missense_Mutation p.P571S 0.18 deleterious_low_confidence(0.04) possibly_damaging(0.641) TCGA-VQ-A91U-01 19 44057638 44057638 C T XRCC1 Silent p.Q172Q 0.39 TCGA-VQ-A91U-01 19 51330957 51330957 G A KLK15 Missense_Mutation p.S53F 0.28 deleterious(0) probably_damaging(0.984) TCGA-VQ-A91U-01 19 5693354 5693354 C T LONP1 Silent p.T886T 0.50 TCGA-VQ-A91U-01 19 9801677 9801677 T C ZNF812 Missense_Mutation p.K168E 0.46 tolerated(0.23) probably_damaging(0.998) TCGA-VQ-A91U-01 1 12835790 12835790 G A PRAMEF12 Missense_Mutation p.R131Q 0.46 tolerated(0.58) benign(0) TCGA-VQ-A91U-01 1 155294087 155294087 C G RUSC1 Intron 0.25 TCGA-VQ-A91U-01 1 156518460 156518460 C T IQGAP3 Missense_Mutation p.A636T 0.49 tolerated(0.5) benign(0.001) TCGA-VQ-A91U-01 1 158913683 158913683 G A PYHIN1 Missense_Mutation p.G369E 0.55 deleterious(0) possibly_damaging(0.658) TCGA-VQ-A91U-01 1 177245564 177245564 G T BRINP2 Nonsense_Mutation p.E336* 0.12 TCGA-VQ-A91U-01 1 196451484 196451484 T G KCNT2 Missense_Mutation p.S101R 0.22 tolerated(0.16) probably_damaging(0.981) TCGA-VQ-A91U-01 1 204587487 204587487 C T LRRN2 Nonsense_Mutation p.W545* 0.28 TCGA-VQ-A91U-01 1 223176177 223176177 G A DISP1 Missense_Mutation p.G480S 0.24 deleterious(0.02) probably_damaging(0.952) TCGA-VQ-A91U-01 1 223285928 223285928 C T TLR5 Missense_Mutation p.R149H 0.34 tolerated(0.61) benign(0.005) TCGA-VQ-A91U-01 1 232615430 232615430 G A SIPA1L2 Silent p.Y676Y 0.18 TCGA-VQ-A91U-01 1 235420528 235420528 G T ARID4B Missense_Mutation p.H44N 0.48 tolerated(0.48) possibly_damaging(0.889) TCGA-VQ-A91U-01 1 248570379 248570379 C G OR2T1 Missense_Mutation p.Q362E 0.40 tolerated(0.17) benign(0.002) TCGA-VQ-A91U-01 1 35365314 35365314 G - DLGAP3 Frame_Shift_Del p.R448Gfs*20 0.37 TCGA-VQ-A91U-01 1 38082227 38082227 A T RSPO1 Missense_Mutation p.V72E 0.32 deleterious(0) benign(0.16) TCGA-VQ-A91U-01 1 42621233 42621233 T G GUCA2B Missense_Mutation p.L102R 0.28 deleterious(0) probably_damaging(0.996) TCGA-VQ-A91U-01 1 57169816 57169816 G C PRKAA2 Missense_Mutation p.A321P 0.16 deleterious(0.05) possibly_damaging(0.739) TCGA-VQ-A91U-01 1 67299306 67299306 G A WDR78 Nonsense_Mutation p.R659* 0.22 TCGA-VQ-A91U-01 1 99771323 99771323 T C LPPR4 Missense_Mutation p.L350P 0.42 tolerated(0.21) benign(0.001) TCGA-VQ-A91U-01 20 29992809 29992809 A G DEFB121 Silent p.T46T 0.16 TCGA-VQ-A91U-01 20 32341223 32341223 C A ZNF341 Silent p.P245P 0.27 TCGA-VQ-A91U-01 20 45318078 45318078 C T TP53RK 5'UTR 0.22 TCGA-VQ-A91U-01 20 62187339 62187339 T C C20orf195 Missense_Mutation p.F108S 0.14 deleterious(0) probably_damaging(0.982) TCGA-VQ-A91U-01 21 11039306 11039306 T A BAGE2 RNA 0.05 TCGA-VQ-A91U-01 21 19642341 19642341 C G TMPRSS15 Missense_Mutation p.G1002A 0.24 deleterious(0.01) probably_damaging(1) TCGA-VQ-A91U-01 21 28306854 28306854 C T ADAMTS5 Silent p.T540T 0.60 TCGA-VQ-A91U-01 22 23247199 23247199 G A IGLJ3 Missense_Mutation p.V49I 0.09 tolerated_low_confidence(0.26) benign(0.205) TCGA-VQ-A91U-01 22 24562606 24562606 G A CABIN1 Splice_Site p.X1670_splice 0.23 TCGA-VQ-A91U-01 22 30772689 30772689 G A CCDC157 Silent p.R738R 0.23 TCGA-VQ-A91U-01 22 31822649 31822649 C T DRG1 Silent p.S254S 0.20 TCGA-VQ-A91U-01 22 32644772 32644772 C T SLC5A4 Silent p.L110L 0.23 TCGA-VQ-A91U-01 22 37603719 37603719 C T SSTR3 Missense_Mutation p.V42I 0.33 tolerated(0.29) benign(0.005) TCGA-VQ-A91U-01 22 38824062 38824062 C T KCNJ4 Missense_Mutation p.G26S 0.22 deleterious(0.03) probably_damaging(0.999) TCGA-VQ-A91U-01 2 105924660 105924660 G A TGFBRAP1 Silent p.C33C 0.07 TCGA-VQ-A91U-01 2 128084284 128084284 G A MAP3K2 Silent p.F192F 0.41 TCGA-VQ-A91U-01 2 160087589 160087589 G A TANC1 3'UTR 0.28 TCGA-VQ-A91U-01 2 160813046 160813046 G A PLA2R1 Silent p.V999V 0.57 TCGA-VQ-A91U-01 2 164466038 164466038 C G FIGN 3'UTR 0.15 TCGA-VQ-A91U-01 2 165555931 165555931 G T COBLL1 Silent p.G552G 0.15 TCGA-VQ-A91U-01 2 185803333 185803333 T C ZNF804A Silent p.P1070P 0.18 TCGA-VQ-A91U-01 2 193059150 193059150 C T TMEFF2 Missense_Mutation p.R34H 0.20 tolerated(0.22) benign(0.284) TCGA-VQ-A91U-01 2 212812259 212812259 C T ERBB4 Missense_Mutation p.R106H 0.12 deleterious(0) probably_damaging(1) TCGA-VQ-A91U-01 2 215838673 215838673 C T ABCA12 Silent p.Q1854Q 0.17 TCGA-VQ-A91U-01 2 222321487 222321487 C G EPHA4 Missense_Mutation p.Q483H 0.16 tolerated(0.28) probably_damaging(0.986) TCGA-VQ-A91U-01 2 231103098 231103098 T A SP140 Splice_Site p.X136_splice 0.19 TCGA-VQ-A91U-01 2 237489631 237489631 G A ACKR3 Missense_Mutation p.V175M 0.43 tolerated(0.06) possibly_damaging(0.72) TCGA-VQ-A91U-01 2 27800239 27800239 C T C2orf16 Missense_Mutation p.P267L 0.15 tolerated(0.26) benign(0.129) TCGA-VQ-A91U-01 2 27849784 27849788 AAGAG - CCDC121 3'Flank 0.28 TCGA-VQ-A91U-01 2 50765736 50765736 C A NRXN1 Missense_Mutation p.A640S 0.15 tolerated(0.09) possibly_damaging(0.661) TCGA-VQ-A91U-01 2 69092997 69092997 G A BMP10 Silent p.Y347Y 0.14 TCGA-VQ-A91U-01 2 73519752 73519752 C T EGR4 Silent p.P201P 0.18 TCGA-VQ-A91U-01 2 74900805 74900805 C T SEMA4F Silent p.A224A 0.41 TCGA-VQ-A91U-01 2 99786046 99786046 A T MITD1 Silent p.I207I 0.48 TCGA-VQ-A91U-01 3 114069779 114069779 G A ZBTB20 Silent p.S382S 0.23 TCGA-VQ-A91U-01 3 119334906 119334906 G A PLA1A Missense_Mutation p.G238R 0.16 deleterious(0) probably_damaging(1) TCGA-VQ-A91U-01 3 119526187 119526187 C T NR1I2 Silent p.N69N 0.19 TCGA-VQ-A91U-01 3 14209775 14209775 G A XPC Missense_Mutation p.A173V 0.53 tolerated(0.76) benign(0.012) TCGA-VQ-A91U-01 3 194118837 194118837 C T GP5 Missense_Mutation p.G59R 0.36 tolerated(1) benign(0.002) TCGA-VQ-A91U-01 3 3030084 3030084 G A CNTN4 Missense_Mutation p.A472T 0.36 tolerated(0.06) possibly_damaging(0.595) TCGA-VQ-A91U-01 3 36527669 36527669 C T STAC Silent p.F205F 0.17 TCGA-VQ-A91U-01 3 38592428 38592428 G A SCN5A Missense_Mutation p.S1812L 0.15 deleterious(0.01) benign(0.005) TCGA-VQ-A91U-01 3 41759312 41759312 G A ULK4 Missense_Mutation p.P788L 0.19 deleterious(0.02) possibly_damaging(0.616) TCGA-VQ-A91U-01 3 49749955 49749955 G A RNF123 Missense_Mutation p.R847Q 0.20 tolerated(0.28) benign(0.007) TCGA-VQ-A91U-01 3 52557308 52557308 C T STAB1 Missense_Mutation p.T2364M 0.16 tolerated(0.06) benign(0.109) TCGA-VQ-A91U-01 3 63819836 63819836 G C THOC7 Missense_Mutation p.A196G 0.18 tolerated(0.16) benign(0.022) TCGA-VQ-A91U-01 4 104640665 104640665 G A TACR3 Silent p.S56S 0.61 TCGA-VQ-A91U-01 4 119252997 119252997 A G PRSS12 Missense_Mutation p.L282P 0.23 deleterious(0) probably_damaging(0.998) TCGA-VQ-A91U-01 4 122301741 122301741 G A QRFPR Missense_Mutation p.T21M 0.60 deleterious(0) probably_damaging(0.939) TCGA-VQ-A91U-01 4 125593500 125593500 T C ANKRD50 Missense_Mutation p.D311G 0.51 deleterious(0.01) probably_damaging(0.981) TCGA-VQ-A91U-01 4 138451252 138451252 G C PCDH18 Missense_Mutation p.P664R 0.55 deleterious(0.01) possibly_damaging(0.77) TCGA-VQ-A91U-01 4 156632319 156632319 G T GUCY1A3 Silent p.T334T 0.26 TCGA-VQ-A91U-01 4 17513649 17513649 G A QDPR Missense_Mutation p.A10V 0.18 tolerated(0.11) benign(0.009) TCGA-VQ-A91U-01 4 2702237 2702237 G T FAM193A Missense_Mutation p.K1155N 0.17 deleterious(0) probably_damaging(0.99) TCGA-VQ-A91U-01 4 87728813 87728813 C A PTPN13 Nonsense_Mutation p.C2287* 0.59 TCGA-VQ-A91U-01 4 951693 951693 G A TMEM175 Silent p.P308P 0.70 TCGA-VQ-A91U-01 5 112164611 112164611 C T APC Missense_Mutation p.T562M 0.66 possibly_damaging(0.555) TCGA-VQ-A91U-01 5 137518918 137518918 G A KIF20A Missense_Mutation p.R298H 0.43 deleterious(0.02) benign(0.009) TCGA-VQ-A91U-01 5 140222357 140222357 C T PCDHA8 Missense_Mutation p.A484V 0.58 tolerated_low_confidence(0.05) benign(0.143) TCGA-VQ-A91U-01 5 140229703 140229703 C T PCDHA9 Silent p.G541G 0.45 TCGA-VQ-A91U-01 5 140431523 140431523 C T PCDHB1 Silent p.S156S 0.25 TCGA-VQ-A91U-01 5 140731755 140731755 G A PCDHGB1 Missense_Mutation p.R643H 0.43 deleterious(0.04) probably_damaging(0.973) TCGA-VQ-A91U-01 5 140745786 140745786 G A PCDHGA5 Missense_Mutation p.R630Q 0.27 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-VQ-A91U-01 5 171765751 171765751 G A SH3PXD2B Silent p.H786H 0.18 TCGA-VQ-A91U-01 5 26988368 26988368 G A CDH9 Nonsense_Mutation p.Q25* 0.48 TCGA-VQ-A91U-01 5 36104205 36104205 A C LMBRD2 Nonsense_Mutation p.Y677* 0.27 TCGA-VQ-A91U-01 6 117686796 117686796 G A ROS1 Missense_Mutation p.A974V 0.33 tolerated(0.24) benign(0.124) TCGA-VQ-A91U-01 6 136599059 136599059 C G BCLAF1 Silent p.S320S 0.04 TCGA-VQ-A91U-01 6 136599061 136599061 A G BCLAF1 Missense_Mutation p.S320P 0.04 deleterious(0.02) possibly_damaging(0.52) TCGA-VQ-A91U-01 6 152652265 152652265 C T SYNE1 Missense_Mutation p.E4519K 0.21 benign(0.154) TCGA-VQ-A91U-01 6 33608268 33608268 G C ITPR3 Missense_Mutation p.D33H 0.14 deleterious(0) probably_damaging(0.996) TCGA-VQ-A91U-01 6 47575753 47575753 T C CD2AP Missense_Mutation p.Y541H 0.07 tolerated(0.48) benign(0.002) TCGA-VQ-A91U-01 6 55925768 55925768 C T COL21A1 Missense_Mutation p.G758D 0.48 deleterious(0) probably_damaging(1) TCGA-VQ-A91U-01 6 66044880 66044880 T C EYS Missense_Mutation p.R587G 0.43 tolerated(0.67) benign(0) TCGA-VQ-A91U-01 6 82904332 82904332 T C IBTK Missense_Mutation p.T1068A 0.14 tolerated(0.45) benign(0.002) TCGA-VQ-A91U-01 7 100198622 100198622 G A FBXO24 3'UTR 0.30 TCGA-VQ-A91U-01 7 121653389 121653389 A G PTPRZ1 Missense_Mutation p.D1430G 0.39 tolerated_low_confidence(0.13) benign(0.004) TCGA-VQ-A91U-01 7 136939605 136939610 CCTGGT TTTC PTN Splice_Site p.X37_splice 0.16 TCGA-VQ-A91U-01 7 142569467 142569467 T C TRPV6 Missense_Mutation p.Q724R 0.16 tolerated_low_confidence(0.14) benign(0.164) TCGA-VQ-A91U-01 7 150761397 150761397 G T SLC4A2 Missense_Mutation p.A54S 0.38 tolerated_low_confidence(1) benign(0.017) TCGA-VQ-A91U-01 7 15240881 15240885 AAAAG - AGMO 3'UTR 0.48 TCGA-VQ-A91U-01 7 154172046 154172046 A G DPP6 Silent p.Q127Q 0.15 TCGA-VQ-A91U-01 7 27203337 27203337 C T HOXA9 Missense_Mutation p.R235H 0.26 deleterious(0) probably_damaging(0.995) TCGA-VQ-A91U-01 7 32909326 32909326 A G KBTBD2 Silent p.I501I 0.14 TCGA-VQ-A91U-01 7 42064901 42064901 C T GLI3 Missense_Mutation p.D440N 0.40 deleterious(0) possibly_damaging(0.887) TCGA-VQ-A91U-01 7 43548589 43548589 G A HECW1 Silent p.S1296S 0.29 TCGA-VQ-A91U-01 7 51095669 51095669 G A COBL Missense_Mutation p.R1042C 0.12 tolerated(0.22) benign(0.001) TCGA-VQ-A91U-01 7 57528680 57528680 T G ZNF716 Missense_Mutation p.N171K 0.25 deleterious(0.01) probably_damaging(0.997) TCGA-VQ-A91U-01 8 104898169 104898169 T G RIMS2 Missense_Mutation p.L448V 0.10 tolerated_low_confidence(0.12) benign(0.007) TCGA-VQ-A91U-01 8 38835554 38835554 C T HTRA4 Missense_Mutation p.S285F 0.54 deleterious(0) probably_damaging(0.995) TCGA-VQ-A91U-01 9 122011320 122011320 G T BRINP1 Silent p.G109G 0.16 TCGA-VQ-A91U-01 9 122011321 122011321 C A BRINP1 Missense_Mutation p.G109V 0.16 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91U-01 9 136518073 136518073 C T DBH Silent p.L462L 0.44 TCGA-VQ-A91U-01 9 17394904 17394904 C T CNTLN Nonsense_Mutation p.R818* 0.33 TCGA-VQ-A91U-01 9 21201787 21201787 C A IFNA7 Missense_Mutation p.E126D 0.25 tolerated(0.1) benign(0.139) TCGA-VQ-A91U-01 9 32632523 32632523 G T TAF1L Missense_Mutation p.L1019M 0.17 deleterious(0) probably_damaging(0.984) TCGA-VQ-A91U-01 9 85630728 85630728 G C RASEF Missense_Mutation p.L253V 0.32 deleterious(0) probably_damaging(0.996) TCGA-VQ-A91U-01 9 90262250 90262250 C T DAPK1 Missense_Mutation p.R421W 0.44 deleterious(0) probably_damaging(0.996) TCGA-VQ-A91U-01 9 99580911 99580911 A C ZNF782 Missense_Mutation p.L465R 0.35 deleterious(0) probably_damaging(1) TCGA-VQ-A91U-01 X 107320739 107320739 C A VSIG1 3'UTR 0.78 TCGA-VQ-A91U-01 X 110555881 110555881 G A DCX Missense_Mutation p.R420W 0.75 deleterious_low_confidence(0) probably_damaging(0.945) TCGA-VQ-A91U-01 X 114082670 114082670 C T HTR2C Missense_Mutation p.R152W 0.29 deleterious(0) probably_damaging(1) TCGA-VQ-A91U-01 X 134993829 134993829 G T SAGE1 Missense_Mutation p.E746D 0.66 tolerated(0.12) possibly_damaging(0.879) TCGA-VQ-A91U-01 X 18843909 18843909 C A PPEF1 Missense_Mutation p.S569Y 0.60 deleterious(0.03) possibly_damaging(0.845) TCGA-VQ-A91U-01 X 41025371 41025371 C G USP9X Missense_Mutation p.F744L 0.36 deleterious(0) probably_damaging(0.914) TCGA-VQ-A91U-01 X 91642801 91642801 G C PCDH11X Missense_Mutation p.G1071A 0.61 tolerated(1) possibly_damaging(0.849) TCGA-VQ-A91V-01 10 106074373 106074373 G A ITPRIP Silent p.I479I 0.09 TCGA-VQ-A91V-01 10 108459040 108459040 T C SORCS1 Missense_Mutation p.T449A 0.43 tolerated(0.13) benign(0.059) TCGA-VQ-A91V-01 10 131639151 131639151 C T EBF3 Silent p.S497S 0.57 TCGA-VQ-A91V-01 10 26462802 26462802 A C MYO3A Missense_Mutation p.E1203D 0.27 tolerated_low_confidence(0.14) benign(0.002) TCGA-VQ-A91V-01 10 37454080 37454080 T G ANKRD30A Silent p.T631T 0.49 TCGA-VQ-A91V-01 10 45878099 45878099 G A ALOX5 Missense_Mutation p.D107N 0.19 tolerated(0.41) benign(0.001) TCGA-VQ-A91V-01 10 50121999 50121999 A C LRRC18 Missense_Mutation p.S68A 0.45 tolerated(0.4) benign(0.006) TCGA-VQ-A91V-01 10 50122273 50122273 A C LRRC18 5'UTR 0.29 TCGA-VQ-A91V-01 10 50960708 50960708 A C OGDHL Missense_Mutation p.L152V 0.55 deleterious(0.03) benign(0.071) TCGA-VQ-A91V-01 10 67726416 67726416 A C CTNNA3 Missense_Mutation p.V785G 0.46 deleterious(0) unknown(0) TCGA-VQ-A91V-01 11 103039508 103039508 T G DYNC2H1 Missense_Mutation p.L1596R 0.26 probably_damaging(0.988) TCGA-VQ-A91V-01 11 114393749 114393749 A C NXPE1 Silent p.T178T 0.29 TCGA-VQ-A91V-01 11 118968667 118968667 C T DPAGT1 Missense_Mutation p.S272N 0.37 deleterious(0) probably_damaging(0.998) TCGA-VQ-A91V-01 11 122944131 122944131 G A CLMP 3'UTR 0.53 TCGA-VQ-A91V-01 11 122955249 122955249 A C CLMP Missense_Mutation p.V120G 0.49 tolerated(0.38) benign(0.112) TCGA-VQ-A91V-01 11 1262688 1262688 C T MUC5B Silent p.D1526D 0.30 TCGA-VQ-A91V-01 11 1265684 1265684 T A MUC5B Missense_Mutation p.L2525Q 0.47 unknown(0) TCGA-VQ-A91V-01 11 129772106 129772106 G T PRDM10 3'UTR 0.32 TCGA-VQ-A91V-01 11 130286907 130286907 C T ADAMTS8 Missense_Mutation p.D342N 0.42 deleterious(0.02) probably_damaging(0.969) TCGA-VQ-A91V-01 11 26656592 26656592 T G ANO3 Missense_Mutation p.L673R 0.28 tolerated(0.07) probably_damaging(0.982) TCGA-VQ-A91V-01 11 40136013 40136013 T A LRRC4C Silent p.T610T 0.44 TCGA-VQ-A91V-01 11 4870378 4870378 A C OR51S1 Missense_Mutation p.L21V 0.47 deleterious(0.03) probably_damaging(0.994) TCGA-VQ-A91V-01 11 4929411 4929411 T G OR51A7 Missense_Mutation p.V271G 0.43 deleterious(0.02) benign(0.261) TCGA-VQ-A91V-01 11 5068434 5068434 T G OR52J3 Missense_Mutation p.F227V 0.49 deleterious(0.01) possibly_damaging(0.895) TCGA-VQ-A91V-01 11 5410825 5410825 G C OR51M1 Missense_Mutation p.R66P 0.61 deleterious(0.01) possibly_damaging(0.45) TCGA-VQ-A91V-01 11 5462078 5462078 T G OR51I1 Missense_Mutation p.I223L 0.15 deleterious(0.01) probably_damaging(0.994) TCGA-VQ-A91V-01 11 55405969 55405969 T A OR4P4 Missense_Mutation p.S46T 0.35 tolerated(0.63) benign(0.008) TCGA-VQ-A91V-01 11 55541046 55541046 T G OR5D13 Missense_Mutation p.L45V 0.41 tolerated(0.06) benign(0.144) TCGA-VQ-A91V-01 11 55653074 55653074 A C TRIM51 Missense_Mutation p.K57T 0.25 tolerated(0.17) benign(0.084) TCGA-VQ-A91V-01 11 56043951 56043951 T G OR5T1 Silent p.T279T 0.56 TCGA-VQ-A91V-01 11 57575764 57575764 G A CTNND1 Silent p.T697T 0.18 TCGA-VQ-A91V-01 11 5969504 5969504 T G OR56A3 Missense_Mutation p.L310V 0.24 tolerated(0.41) benign(0.081) TCGA-VQ-A91V-01 11 89774338 89774338 A C TRIM49C Missense_Mutation p.S327R 0.11 tolerated(0.19) benign(0.01) TCGA-VQ-A91V-01 11 92533395 92533395 T G FAT3 Missense_Mutation p.L2406V 0.35 probably_damaging(0.999) TCGA-VQ-A91V-01 11 9878255 9878255 C A SBF2 Missense_Mutation p.D705Y 0.30 deleterious(0.03) benign(0.001) TCGA-VQ-A91V-01 12 111652028 111652028 G C CUX2 Missense_Mutation p.E30Q 0.72 tolerated(0.29) probably_damaging(0.997) TCGA-VQ-A91V-01 12 121448813 121448813 C T C12orf43 Intron 0.69 TCGA-VQ-A91V-01 12 124403316 124403316 C T DNAH10 Silent p.L3658L 0.82 TCGA-VQ-A91V-01 12 21331643 21331643 T G SLCO1B1 Silent p.S205S 0.94 TCGA-VQ-A91V-01 12 21526326 21526326 C A IAPP Missense_Mutation p.S14Y 0.05 deleterious(0.01) benign(0.106) TCGA-VQ-A91V-01 12 21526343 21526343 C A IAPP Missense_Mutation p.L20M 0.04 tolerated(0.11) probably_damaging(0.945) TCGA-VQ-A91V-01 12 73046873 73046873 A C TRHDE Missense_Mutation p.N929T 0.68 deleterious(0) probably_damaging(0.99) TCGA-VQ-A91V-01 13 101833582 101833582 A C NALCN Intron 0.36 TCGA-VQ-A91V-01 13 19751191 19751191 T G TUBA3C Missense_Mutation p.K311T 0.42 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-VQ-A91V-01 13 23906109 23906109 A C SACS Missense_Mutation p.L3969R 0.40 probably_damaging(0.996) TCGA-VQ-A91V-01 13 23909805 23909805 A C SACS Missense_Mutation p.L2737R 0.41 probably_damaging(0.997) TCGA-VQ-A91V-01 13 23912736 23912736 A C SACS Missense_Mutation p.L1760R 0.40 probably_damaging(0.996) TCGA-VQ-A91V-01 13 36385071 36385071 T G DCLK1 Missense_Mutation p.K530T 0.43 deleterious(0) possibly_damaging(0.607) TCGA-VQ-A91V-01 13 36521572 36521572 A C DCLK1 Missense_Mutation p.F249C 0.69 deleterious(0) unknown(0) TCGA-VQ-A91V-01 13 37007269 37007269 A C CCNA1 Missense_Mutation p.T70P 0.35 tolerated(0.1) benign(0.003) TCGA-VQ-A91V-01 13 38153490 38153490 T A POSTN Missense_Mutation p.K556I 0.45 tolerated(0.23) possibly_damaging(0.892) TCGA-VQ-A91V-01 13 38154749 38154749 T C POSTN Missense_Mutation p.K493R 0.40 tolerated(0.17) benign(0.217) TCGA-VQ-A91V-01 13 42306245 42306245 C T VWA8 Missense_Mutation p.G825R 0.36 deleterious(0) probably_damaging(0.967) TCGA-VQ-A91V-01 13 46917551 46917551 A C KIAA0226L Missense_Mutation p.L653R 0.29 deleterious(0.04) benign(0.111) TCGA-VQ-A91V-01 13 61986022 61986022 T C PCDH20 Missense_Mutation p.D737G 0.39 deleterious(0) probably_damaging(1) TCGA-VQ-A91V-01 13 95055341 95055341 T C GPC6 Missense_Mutation p.V513A 0.48 tolerated(0.58) benign(0.002) TCGA-VQ-A91V-01 14 100361038 100361038 C A EML1 Missense_Mutation p.S226Y 0.37 deleterious(0.02) possibly_damaging(0.694) TCGA-VQ-A91V-01 14 103410511 103410511 G A CDC42BPB Silent p.S1375S 0.35 TCGA-VQ-A91V-01 14 105177496 105177496 C T INF2 Silent p.R797R 0.33 TCGA-VQ-A91V-01 14 20248821 20248821 T G OR4M1 Missense_Mutation p.L114V 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-VQ-A91V-01 14 20296136 20296136 T G OR4N2 Missense_Mutation p.F177V 0.18 deleterious(0) probably_damaging(0.981) TCGA-VQ-A91V-01 14 20296349 20296349 T G OR4N2 Missense_Mutation p.F248V 0.22 tolerated(1) benign(0.044) TCGA-VQ-A91V-01 14 20345002 20345002 T C OR4K2 Silent p.T192T 0.18 TCGA-VQ-A91V-01 14 31416392 31416392 G C STRN3 Missense_Mutation p.S207C 0.40 tolerated(0.06) possibly_damaging(0.751) TCGA-VQ-A91V-01 14 42356534 42356534 A C LRFN5 Missense_Mutation p.S236R 0.38 deleterious(0) probably_damaging(0.98) TCGA-VQ-A91V-01 14 52505658 52505658 A T NID2 Silent p.T688T 0.37 TCGA-VQ-A91V-01 14 64894060 64894060 C T MTHFD1 Missense_Mutation p.T378I 0.41 deleterious(0) probably_damaging(1) TCGA-VQ-A91V-01 14 73746075 73746075 G T NUMB Missense_Mutation p.A385E 0.48 tolerated(0.64) benign(0.223) TCGA-VQ-A91V-01 15 22332405 22332405 G A RP11-69H14.6 RNA 0.20 TCGA-VQ-A91V-01 15 22473170 22473170 G A IGHV4OR15-8 Missense_Mutation p.S34L 0.22 deleterious(0.04) benign(0.143) TCGA-VQ-A91V-01 15 24923532 24923532 T G NPAP1 Missense_Mutation p.F840V 0.28 tolerated(0.38) benign(0.133) TCGA-VQ-A91V-01 15 34130587 34130587 C G RYR3 Missense_Mutation p.L4136V 0.32 benign(0.004) TCGA-VQ-A91V-01 15 48063126 48063126 A C SEMA6D Missense_Mutation p.K789T 0.37 deleterious(0.04) benign(0.008) TCGA-VQ-A91V-01 15 48499982 48499982 A C SLC12A1 Missense_Mutation p.Q22H 0.23 tolerated(0.05) probably_damaging(0.995) TCGA-VQ-A91V-01 15 59063682 59063682 C T FAM63B Silent p.L30L 0.19 TCGA-VQ-A91V-01 15 75012690 75012690 A G CYP1A1 3'UTR 0.38 TCGA-VQ-A91V-01 15 83455922 83455922 A C FSD2 Missense_Mutation p.L74R 0.28 deleterious(0) probably_damaging(0.956) TCGA-VQ-A91V-01 15 84651619 84651619 T A ADAMTSL3 Missense_Mutation p.F1080Y 0.28 tolerated(0.56) benign(0.285) TCGA-VQ-A91V-01 15 86800174 86800174 G A AGBL1 Missense_Mutation p.V230I 0.54 tolerated(0.22) benign(0.08) TCGA-VQ-A91V-01 16 28167502 28167502 C T XPO6 Silent p.E330E 0.49 TCGA-VQ-A91V-01 16 3900421 3900421 C T CREBBP Silent p.P225P 0.24 TCGA-VQ-A91V-01 16 46649918 46649918 C T SHCBP1 Nonsense_Mutation p.W179* 0.11 TCGA-VQ-A91V-01 16 4790603 4790603 C A C16orf71 Silent p.P242P 0.32 TCGA-VQ-A91V-01 16 50257227 50257227 A G PAPD5 Missense_Mutation p.D422G 0.19 deleterious(0) possibly_damaging(0.9) TCGA-VQ-A91V-01 16 50733399 50733399 G A NOD2 Missense_Mutation p.G25D 0.40 deleterious_low_confidence(0.02) benign(0.005) TCGA-VQ-A91V-01 16 55363131 55363131 A C IRX6 Missense_Mutation p.K414T 0.43 tolerated(1) benign(0) TCGA-VQ-A91V-01 16 57752258 57752258 G T CCDC135 Splice_Site p.X360_splice 0.33 TCGA-VQ-A91V-01 16 61851463 61851463 T G CDH8 Missense_Mutation p.E399D 0.47 tolerated(0.24) benign(0.04) TCGA-VQ-A91V-01 16 84182639 84182639 T C DNAAF1 Missense_Mutation p.V51A 0.33 tolerated(0.21) benign(0.039) TCGA-VQ-A91V-01 16 84193342 84193342 C T DNAAF1 Silent p.V268V 0.26 TCGA-VQ-A91V-01 17 3195398 3195398 A C OR3A1 Missense_Mutation p.L160R 0.66 deleterious(0) probably_damaging(0.982) TCGA-VQ-A91V-01 17 51901630 51901630 T G KIF2B Silent p.T412T 0.36 TCGA-VQ-A91V-01 17 56573630 56573630 T C MTMR4 Missense_Mutation p.T625A 0.39 tolerated(0.25) probably_damaging(0.997) TCGA-VQ-A91V-01 17 61890675 61890675 G A DDX42 Missense_Mutation p.R588H 0.05 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91V-01 17 67538000 67538000 C T MAP2K6 3'UTR 0.36 TCGA-VQ-A91V-01 17 73832924 73832924 G A UNC13D Silent p.S377S 0.42 TCGA-VQ-A91V-01 17 7578530 7578530 A G TP53 Missense_Mutation p.F134L 0.88 deleterious(0) probably_damaging(1) TCGA-VQ-A91V-01 18 25593870 25593870 T G CDH2 Missense_Mutation p.K59T 0.71 tolerated(0.37) benign(0.003) TCGA-VQ-A91V-01 18 50866130 50866130 A G DCC Missense_Mutation p.T738A 0.75 tolerated(0.39) benign(0.02) TCGA-VQ-A91V-01 18 5394733 5394733 T G EPB41L3 Missense_Mutation p.K1071N 0.66 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91V-01 18 5434011 5434011 C T EPB41L3 Missense_Mutation p.D239N 0.80 deleterious(0) probably_damaging(1) TCGA-VQ-A91V-01 18 66721374 66721375 AT C CCDC102B Missense_Mutation 0.30 TCGA-VQ-A91V-01 18 7034564 7034564 A G LAMA1 Silent p.D655D 0.79 TCGA-VQ-A91V-01 18 74700336 74700336 G C RP11-862L9.3 3'Flank 0.64 TCGA-VQ-A91V-01 19 10655753 10655753 G C ATG4D Missense_Mutation p.R147P 0.66 deleterious(0) probably_damaging(0.918) TCGA-VQ-A91V-01 19 2832480 2832480 G A ZNF554 Missense_Mutation p.A145T 0.66 tolerated(0.38) benign(0.004) TCGA-VQ-A91V-01 19 31039381 31039381 T C ZNF536 Missense_Mutation p.V952A 0.76 tolerated(0.89) benign(0) TCGA-VQ-A91V-01 19 37488342 37488342 A G ZNF568 Silent p.K519K 0.53 TCGA-VQ-A91V-01 19 38027931 38027931 T G ZNF793 Missense_Mutation p.L124R 0.42 tolerated(0.35) benign(0.003) TCGA-VQ-A91V-01 19 38104226 38104226 A C ZNF540 3'UTR 0.43 TCGA-VQ-A91V-01 19 5208390 5208390 G A PTPRS Missense_Mutation p.R1834W 0.67 deleterious(0) probably_damaging(0.947) TCGA-VQ-A91V-01 19 52439306 52439306 A C ZNF613 5'UTR 0.29 TCGA-VQ-A91V-01 19 53643591 53643591 G A ZNF347 Silent p.F831F 0.35 TCGA-VQ-A91V-01 19 53762234 53762234 A C VN1R2 Missense_Mutation p.K202N 0.40 deleterious(0.02) probably_damaging(0.983) TCGA-VQ-A91V-01 19 53995165 53995165 T G ZNF813 Missense_Mutation p.F560C 0.39 deleterious(0) probably_damaging(1) TCGA-VQ-A91V-01 19 54242630 54242630 A G MIR518A2 RNA 0.43 TCGA-VQ-A91V-01 19 57035783 57035783 T A ZNF471 Missense_Mutation p.L116H 0.40 deleterious(0.04) benign(0.2) TCGA-VQ-A91V-01 19 57325616 57325616 T G PEG3 Missense_Mutation p.E1398D 0.43 tolerated(0.06) probably_damaging(0.996) TCGA-VQ-A91V-01 19 58213438 58213438 T C ZNF154 Silent p.K293K 0.40 TCGA-VQ-A91V-01 19 58565272 58565272 C T ZSCAN1 Silent p.S360S 0.42 TCGA-VQ-A91V-01 1 12921521 12921521 A T PRAMEF2 Missense_Mutation p.M438L 0.43 tolerated(0.76) benign(0.004) TCGA-VQ-A91V-01 1 12939842 12939842 C T PRAMEF4 Silent p.P320P 0.42 TCGA-VQ-A91V-01 1 12979843 12979843 A C PRAMEF7 Missense_Mutation p.Q345H 0.31 possibly_damaging(0.878) TCGA-VQ-A91V-01 1 152191994 152191994 T G HRNR Missense_Mutation p.K704T 0.33 unknown(0) TCGA-VQ-A91V-01 1 152975804 152975804 A C SPRR3 Missense_Mutation p.E103A 0.36 tolerated(0.16) possibly_damaging(0.679) TCGA-VQ-A91V-01 1 158225038 158225038 T G CD1A Missense_Mutation p.F75V 0.56 deleterious(0) benign(0.247) TCGA-VQ-A91V-01 1 158325192 158325192 T C CD1E Missense_Mutation p.I153T 0.49 tolerated(0.5) benign(0.002) TCGA-VQ-A91V-01 1 158651366 158651366 T G SPTA1 Missense_Mutation p.Q161P 0.43 tolerated(0.2) possibly_damaging(0.864) TCGA-VQ-A91V-01 1 158747082 158747082 A G OR6N2 Missense_Mutation p.L115P 0.30 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91V-01 1 158913740 158913740 T C PYHIN1 Missense_Mutation p.L388P 0.41 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91V-01 1 159176064 159176064 C A DARC Missense_Mutation p.Q281K 0.33 tolerated(0.06) probably_damaging(0.996) TCGA-VQ-A91V-01 1 159284282 159284282 A C OR10J3 Silent p.L56L 0.50 TCGA-VQ-A91V-01 1 160062359 160062359 C T IGSF8 Nonsense_Mutation p.W480* 0.17 TCGA-VQ-A91V-01 1 160793466 160793466 C T LY9 Silent p.G570G 0.40 TCGA-VQ-A91V-01 1 161196256 161196256 C T TOMM40L 5'UTR 0.42 TCGA-VQ-A91V-01 1 161968002 161968002 C T OLFML2B Missense_Mutation p.D363N 0.47 tolerated(0.45) benign(0.124) TCGA-VQ-A91V-01 1 175046658 175046658 A C TNN Missense_Mutation p.N35T 0.35 tolerated(0.4) benign(0.011) TCGA-VQ-A91V-01 1 177001858 177001858 T C ASTN1 Missense_Mutation p.E200G 0.41 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-VQ-A91V-01 1 190067548 190067548 T G BRINP3 Missense_Mutation p.K634T 0.40 deleterious(0.01) benign(0.031) TCGA-VQ-A91V-01 1 201868514 201868514 G A LMOD1 Missense_Mutation p.P543S 0.32 probably_damaging(1) TCGA-VQ-A91V-01 1 231413407 231413407 G A GNPAT 3'UTR 0.47 TCGA-VQ-A91V-01 1 240492410 240492410 A G FMN2 Missense_Mutation p.K1417R 0.30 possibly_damaging(0.522) TCGA-VQ-A91V-01 1 241031960 241031960 T A RGS7 Missense_Mutation p.K179M 0.46 deleterious(0) probably_damaging(0.998) TCGA-VQ-A91V-01 1 248224688 248224688 A C OR2L3 Missense_Mutation p.K235N 0.34 deleterious(0.01) possibly_damaging(0.687) TCGA-VQ-A91V-01 1 248512182 248512182 A C OR14C36 Missense_Mutation p.T36P 0.30 deleterious(0) possibly_damaging(0.905) TCGA-VQ-A91V-01 1 248525579 248525579 T G OR2T4 Missense_Mutation p.L233V 0.34 tolerated(0.79) benign(0.173) TCGA-VQ-A91V-01 1 248756506 248756506 A G OR2T10 Silent p.S188S 0.41 TCGA-VQ-A91V-01 1 248790431 248790431 G A OR2T11 5'UTR 0.33 TCGA-VQ-A91V-01 1 249211740 249211740 G A PGBD2 Silent p.K319K 0.48 TCGA-VQ-A91V-01 1 34663068 34663068 A C C1orf94 Missense_Mutation p.K188T 0.27 tolerated(0.05) probably_damaging(0.919) TCGA-VQ-A91V-01 1 36823906 36823906 G A STK40 Silent p.T92T 0.66 TCGA-VQ-A91V-01 1 39913797 39913797 A G MACF1 Silent p.K4628K 0.27 TCGA-VQ-A91V-01 1 43824929 43824929 C T CDC20 Nonsense_Mutation p.Q15* 0.47 TCGA-VQ-A91V-01 1 47685497 47685497 C T TAL1 Silent p.G297G 0.14 TCGA-VQ-A91V-01 1 53153823 53153823 G A COA7 Silent p.L89L 0.25 TCGA-VQ-A91V-01 1 57347303 57347303 T A C8A Missense_Mutation p.F217Y 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-VQ-A91V-01 1 71418602 71418602 T C PTGER3 Silent p.V415V 0.49 TCGA-VQ-A91V-01 1 75038277 75038277 T G C1orf173 Missense_Mutation p.E1039D 0.36 tolerated(0.09) possibly_damaging(0.862) TCGA-VQ-A91V-01 1 75681467 75681467 T G SLC44A5 Missense_Mutation p.K567T 0.25 deleterious(0.01) probably_damaging(0.944) TCGA-VQ-A91V-01 1 86590793 86590793 T G COL24A1 Missense_Mutation p.K409T 0.54 tolerated(0.26) possibly_damaging(0.548) TCGA-VQ-A91V-01 1 91817108 91817108 G A HFM1 Silent p.S690S 0.33 TCGA-VQ-A91V-01 20 25398808 25398808 C T GINS1 Nonsense_Mutation p.R103* 0.29 TCGA-VQ-A91V-01 20 31019407 31019407 C T ASXL1 Missense_Mutation p.R302C 0.35 deleterious(0) probably_damaging(1) TCGA-VQ-A91V-01 20 42086678 42086678 C T SRSF6 Missense_Mutation p.P2L 0.36 deleterious(0) possibly_damaging(0.581) TCGA-VQ-A91V-01 20 49203764 49203765 - T FAM65C 3'UTR 0.37 TCGA-VQ-A91V-01 21 11047501 11047501 T G BAGE2 RNA 0.09 TCGA-VQ-A91V-01 22 18185194 18185194 A G BCL2L13 Intron 0.60 TCGA-VQ-A91V-01 22 22869567 22869567 G A ZNF280A Missense_Mutation p.P130S 0.78 tolerated(0.46) benign(0.431) TCGA-VQ-A91V-01 22 30067882 30067882 T G NF2 Missense_Mutation p.L356W 0.81 deleterious(0) probably_damaging(0.987) TCGA-VQ-A91V-01 2 107041249 107041249 T G RGPD3 Missense_Mutation p.K1058N 0.37 tolerated(0.09) benign(0.183) TCGA-VQ-A91V-01 2 116548879 116548879 G T DPP10 Missense_Mutation p.L553F 0.30 deleterious(0.01) possibly_damaging(0.773) TCGA-VQ-A91V-01 2 125282004 125282004 T G CNTNAP5 Nonsense_Mutation p.Y483* 0.53 TCGA-VQ-A91V-01 2 141298623 141298623 A G LRP1B Silent p.L2478L 0.44 TCGA-VQ-A91V-01 2 159077216 159077217 - T CCDC148 Frame_Shift_Ins p.Y421Ifs*29 0.44 TCGA-VQ-A91V-01 2 179495996 179495996 T C TTN Silent p.Q14593Q 0.47 TCGA-VQ-A91V-01 2 179586855 179586855 T G TTN Missense_Mutation p.K7512T 0.41 TCGA-VQ-A91V-01 2 179604702 179604702 T G TTN Silent p.R4420R 0.45 TCGA-VQ-A91V-01 2 185801789 185801789 A G ZNF804A Missense_Mutation p.R556G 0.39 tolerated(0.1) probably_damaging(0.966) TCGA-VQ-A91V-01 2 201796105 201796105 G A ORC2 Nonsense_Mutation p.Q292* 0.31 TCGA-VQ-A91V-01 2 206166297 206166297 C G PARD3B Silent p.V772V 0.77 TCGA-VQ-A91V-01 2 212248596 212248596 T G ERBB4 Missense_Mutation p.N1224T 0.32 tolerated(0.77) benign(0.003) TCGA-VQ-A91V-01 2 218712303 218712303 A C TNS1 Silent p.T854T 0.34 TCGA-VQ-A91V-01 2 31598295 31598295 T G XDH Missense_Mutation p.K518T 0.76 deleterious(0.01) probably_damaging(0.977) TCGA-VQ-A91V-01 2 49191063 49191063 T G FSHR Missense_Mutation p.Q299H 0.46 tolerated(0.07) benign(0.009) TCGA-VQ-A91V-01 2 60688785 60688785 T C BCL11A Missense_Mutation p.K421R 0.33 deleterious(0.01) benign(0.292) TCGA-VQ-A91V-01 2 79350397 79350397 A C REG1A 3'UTR 0.31 TCGA-VQ-A91V-01 2 88327832 88327832 C T KRCC1 Missense_Mutation p.R84Q 0.36 tolerated(1) benign(0.002) TCGA-VQ-A91V-01 2 90229380 90229380 A C IGKV1D-42 Missense_Mutation p.K67T 0.38 tolerated(0.07) benign(0.104) TCGA-VQ-A91V-01 3 122843139 122843139 A C PDIA5 Missense_Mutation p.Q241P 0.56 tolerated(0.34) benign(0.005) TCGA-VQ-A91V-01 3 136646885 136646885 G T NCK1 Silent p.V14V 0.48 TCGA-VQ-A91V-01 3 156763476 156763476 T G LEKR1 Silent p.S672S 0.51 TCGA-VQ-A91V-01 3 159713299 159713299 C T IL12A Missense_Mutation p.R239W 0.50 deleterious(0) probably_damaging(1) TCGA-VQ-A91V-01 3 164908242 164908242 A C SLITRK3 Missense_Mutation p.I126S 0.21 tolerated(0.76) benign(0.008) TCGA-VQ-A91V-01 3 167023579 167023579 A C ZBBX Missense_Mutation p.L526R 0.33 tolerated(0.27) possibly_damaging(0.514) TCGA-VQ-A91V-01 3 167750505 167750505 G A GOLIM4 Missense_Mutation p.R327C 0.52 tolerated(0.07) possibly_damaging(0.498) TCGA-VQ-A91V-01 3 178560753 178560753 T G KCNMB2 3'UTR 0.42 TCGA-VQ-A91V-01 3 193042674 193042674 T C ATP13A5 Silent p.K551K 0.56 TCGA-VQ-A91V-01 3 73440209 73440209 C T PDZRN3 Missense_Mutation p.R438Q 0.75 deleterious(0) possibly_damaging(0.717) TCGA-VQ-A91V-01 3 73440210 73440210 G T PDZRN3 Silent p.R438R 0.75 TCGA-VQ-A91V-01 3 96963186 96963186 A C EPHA6 Intron 0.20 TCGA-VQ-A91V-01 3 99514931 99514931 G A COL8A1 Missense_Mutation p.G729E 0.54 deleterious(0.04) probably_damaging(0.958) TCGA-VQ-A91V-01 4 113554339 113554339 T G C4orf21 5'UTR 0.52 TCGA-VQ-A91V-01 4 115856423 115856423 G T NDST4 Missense_Mutation p.P492H 0.35 tolerated(0.08) probably_damaging(0.999) TCGA-VQ-A91V-01 4 126372220 126372220 A C FAT4 Missense_Mutation p.K3350T 0.30 benign(0.155) TCGA-VQ-A91V-01 4 126384743 126384743 T G FAT4 Missense_Mutation p.N3940K 0.55 benign(0.004) TCGA-VQ-A91V-01 4 155180831 155180831 T G DCHS2 Missense_Mutation p.S1764R 0.30 tolerated(0.05) possibly_damaging(0.642) TCGA-VQ-A91V-01 4 155254023 155254023 G A DCHS2 Missense_Mutation p.P614S 0.51 tolerated(0.16) benign(0.346) TCGA-VQ-A91V-01 4 155254615 155254615 A G DCHS2 Silent p.S416S 0.40 TCGA-VQ-A91V-01 4 158041763 158041763 T G GLRB Missense_Mutation p.L60V 0.45 deleterious(0) probably_damaging(0.924) TCGA-VQ-A91V-01 4 164246855 164246855 T G NPY1R Missense_Mutation p.K252T 0.42 tolerated(0.24) benign(0.115) TCGA-VQ-A91V-01 4 165961327 165961327 T G TRIM60 Missense_Mutation p.F35V 0.31 deleterious(0) possibly_damaging(0.896) TCGA-VQ-A91V-01 4 166915634 166915634 A G TLL1 Missense_Mutation p.R155G 0.34 deleterious(0) possibly_damaging(0.885) TCGA-VQ-A91V-01 4 169344916 169344916 G A DDX60L Missense_Mutation p.S647L 0.36 deleterious(0.04) benign(0.009) TCGA-VQ-A91V-01 4 175897786 175897786 T C ADAM29 Silent p.S370S 0.48 TCGA-VQ-A91V-01 4 46314558 46314558 T G GABRA2 Missense_Mutation p.K144T 0.81 deleterious(0) probably_damaging(0.993) TCGA-VQ-A91V-01 4 70066085 70066085 C A UGT2B11 3'UTR 0.46 TCGA-VQ-A91V-01 4 87622674 87622674 G T PTPN13 Missense_Mutation p.L305F 0.42 deleterious(0) probably_damaging(0.996) TCGA-VQ-A91V-01 4 96761606 96761606 T G PDHA2 Missense_Mutation p.L102R 0.56 deleterious(0) probably_damaging(0.951) TCGA-VQ-A91V-01 5 136324248 136324248 A C SPOCK1 Missense_Mutation p.L264R 0.53 deleterious(0) probably_damaging(1) TCGA-VQ-A91V-01 5 140553262 140553262 T C PCDHB7 Silent p.S282S 0.38 TCGA-VQ-A91V-01 5 142779275 142779275 G A NR3C1 Missense_Mutation p.S377F 0.05 deleterious(0.02) possibly_damaging(0.528) TCGA-VQ-A91V-01 5 150922506 150922506 G A FAT2 Missense_Mutation p.R2728W 0.42 possibly_damaging(0.773) TCGA-VQ-A91V-01 5 158141188 158141188 T G EBF1 Missense_Mutation p.E376D 0.25 tolerated(0.05) benign(0.082) TCGA-VQ-A91V-01 5 170395365 170395365 T G RANBP17 Missense_Mutation p.L565R 0.44 deleterious(0) possibly_damaging(0.564) TCGA-VQ-A91V-01 5 71495359 71495359 C T MAP1B Silent p.Y2059Y 0.19 TCGA-VQ-A91V-01 5 9044617 9044617 A C SEMA5A Silent p.T991T 0.39 TCGA-VQ-A91V-01 5 98223914 98223914 G T CHD1 Missense_Mutation p.L792I 0.28 deleterious(0) probably_damaging(0.985) TCGA-VQ-A91V-01 6 112671050 112671050 C T RFPL4B Missense_Mutation p.A47V 0.30 tolerated(0.07) benign(0.003) TCGA-VQ-A91V-01 6 12122176 12122176 G A HIVEP1 Silent p.T716T 0.42 TCGA-VQ-A91V-01 6 125232069 125232069 T G RP11-510H23.1 RNA 0.45 TCGA-VQ-A91V-01 6 128505687 128505687 C T PTPRK Nonsense_Mutation p.W351* 0.39 TCGA-VQ-A91V-01 6 144758745 144758745 C T UTRN Silent p.S368S 0.27 TCGA-VQ-A91V-01 6 144783820 144783820 C A UTRN Missense_Mutation p.P962T 0.48 tolerated(0.08) benign(0.185) TCGA-VQ-A91V-01 6 146480720 146480720 T A GRM1 Missense_Mutation p.S313T 0.44 deleterious(0.02) benign(0.065) TCGA-VQ-A91V-01 6 147635092 147635092 G A STXBP5 Silent p.A406A 0.33 TCGA-VQ-A91V-01 6 153019200 153019200 A C MYCT1 Missense_Mutation p.S55R 0.32 tolerated(0.21) benign(0.01) TCGA-VQ-A91V-01 6 15512605 15512605 G T JARID2 Missense_Mutation p.G1040V 0.45 deleterious(0.04) probably_damaging(0.999) TCGA-VQ-A91V-01 6 28963560 28963560 T G ZNF311 Silent p.R407R 0.37 TCGA-VQ-A91V-01 6 30228284 30228284 C T HCG17 Intron 0.09 TCGA-VQ-A91V-01 6 38867568 38867568 G A DNAH8 Missense_Mutation p.R2810Q 0.39 probably_damaging(0.974) TCGA-VQ-A91V-01 6 51512849 51512849 G T PKHD1 Missense_Mutation p.A3793E 0.42 deleterious(0.01) benign(0.035) TCGA-VQ-A91V-01 6 56437652 56437652 C T DST Missense_Mutation p.E1860K 0.46 probably_damaging(0.999) TCGA-VQ-A91V-01 6 57512773 57512773 A C PRIM2 3'UTR 0.20 TCGA-VQ-A91V-01 6 62442600 62442600 T C KHDRBS2 Missense_Mutation p.T294A 0.49 tolerated(0.19) benign(0.035) TCGA-VQ-A91V-01 6 66200494 66200494 T G EYS Missense_Mutation p.Q285H 0.22 tolerated(0.14) possibly_damaging(0.46) TCGA-VQ-A91V-01 6 69759213 69759213 T G BAI3 Missense_Mutation p.L770V 0.41 deleterious(0.04) probably_damaging(0.965) TCGA-VQ-A91V-01 6 88854841 88854841 A C CNR1 Silent p.T51T 0.35 TCGA-VQ-A91V-01 7 100193300 100193300 G A FBXO24 Missense_Mutation p.D431N 0.39 tolerated(0.08) possibly_damaging(0.822) TCGA-VQ-A91V-01 7 113518542 113518542 A C PPP1R3A Missense_Mutation p.L869V 0.54 tolerated(0.07) benign(0.391) TCGA-VQ-A91V-01 7 113558642 113558642 A G PPP1R3A Missense_Mutation p.L137P 0.47 tolerated(1) benign(0) TCGA-VQ-A91V-01 7 21721205 21721205 A C DNAH11 Missense_Mutation p.E1795D 0.32 benign(0.071) TCGA-VQ-A91V-01 7 38462066 38462066 A C AMPH Silent p.T409T 0.32 TCGA-VQ-A91V-01 7 45005371 45005371 C T MYO1G Missense_Mutation p.R749Q 0.22 deleterious(0.01) benign(0.206) TCGA-VQ-A91V-01 7 49951712 49951712 T G VWC2 Silent p.T303T 0.46 TCGA-VQ-A91V-01 7 72985558 72985558 G A TBL2 Missense_Mutation p.A280V 0.51 deleterious(0) probably_damaging(0.99) TCGA-VQ-A91V-01 7 84636209 84636209 A C SEMA3D Missense_Mutation p.F606C 0.52 tolerated(0.15) possibly_damaging(0.796) TCGA-VQ-A91V-01 7 86394541 86394541 A C GRM3 Missense_Mutation p.N27T 0.36 tolerated(0.65) benign(0.002) TCGA-VQ-A91V-01 7 94539329 94539329 T G PPP1R9A 5'UTR 0.19 TCGA-VQ-A91V-01 7 99796147 99796147 G A STAG3 Missense_Mutation p.V432I 0.13 tolerated(0.1) benign(0.002) TCGA-VQ-A91V-01 8 104898091 104898091 A C RIMS2 Missense_Mutation p.S422R 0.51 tolerated_low_confidence(0.45) possibly_damaging(0.602) TCGA-VQ-A91V-01 8 105367380 105367380 A C DCSTAMP Missense_Mutation p.E435D 0.46 tolerated(0.26) benign(0.007) TCGA-VQ-A91V-01 8 106813886 106813886 C T ZFPM2 Missense_Mutation p.R526W 0.44 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91V-01 8 108315469 108315469 T CG ANGPT1 Frame_Shift_Ins p.K312Tfs*20 0.36 TCGA-VQ-A91V-01 8 113347666 113347666 A C CSMD3 Missense_Mutation p.F2353V 0.51 deleterious(0) probably_damaging(0.932) TCGA-VQ-A91V-01 8 133898746 133898746 T G TG Missense_Mutation p.F377V 0.39 deleterious(0.02) possibly_damaging(0.724) TCGA-VQ-A91V-01 8 3253866 3253866 T C CSMD1 Missense_Mutation p.R815G 0.27 possibly_damaging(0.805) TCGA-VQ-A91V-01 8 41122690 41122690 T G SFRP1 Missense_Mutation p.K314T 0.33 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-VQ-A91V-01 8 54147657 54147657 T G OPRK1 Missense_Mutation p.K91T 0.30 deleterious(0) probably_damaging(1) TCGA-VQ-A91V-01 8 55371645 55371645 C T SOX17 Missense_Mutation p.A112V 0.38 tolerated(0.15) probably_damaging(0.989) TCGA-VQ-A91V-01 8 59346987 59346987 T G UBXN2B Missense_Mutation p.F153V 0.46 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A91V-01 8 69031715 69031715 A C PREX2 Missense_Mutation p.K1157T 0.33 deleterious(0) benign(0.133) TCGA-VQ-A91V-01 8 69046509 69046509 T G PREX2 Missense_Mutation p.L1328V 0.34 tolerated(1) benign(0.197) TCGA-VQ-A91V-01 8 81905433 81905433 G A PAG1 Silent p.S10S 0.34 TCGA-VQ-A91V-01 9 100437664 100437664 C G XPA 3'UTR 0.47 TCGA-VQ-A91V-01 9 129981072 129981072 T C RALGPS1 3'UTR 0.39 TCGA-VQ-A91V-01 9 137676843 137676843 C T COL5A1 Silent p.I831I 0.18 TCGA-VQ-A91V-01 9 138651550 138651550 C T KCNT1 Missense_Mutation p.R294W 0.38 deleterious(0) probably_damaging(1) TCGA-VQ-A91V-01 9 139108532 139108532 C T QSOX2 Missense_Mutation p.E375K 0.43 tolerated(0.14) benign(0.033) TCGA-VQ-A91V-01 9 17330742 17330742 A C CNTLN Missense_Mutation p.N485T 0.67 tolerated(0.16) benign(0.234) TCGA-VQ-A91V-01 9 17466793 17466793 A G CNTLN Silent p.Q1253Q 0.80 TCGA-VQ-A91V-01 9 21974780 21974780 A C CDKN2A Missense_Mutation p.L16R 0.55 deleterious(0) probably_damaging(0.975) TCGA-VQ-A91V-01 9 72840972 72840972 T A MAMDC2 3'UTR 0.65 TCGA-VQ-A91V-01 9 79325757 79325757 G A PRUNE2 Missense_Mutation p.A478V 0.47 tolerated(0.09) benign(0.09) TCGA-VQ-A91V-01 9 94487215 94487215 A C ROR2 Missense_Mutation p.F521V 0.34 deleterious(0.02) probably_damaging(1) TCGA-VQ-A91V-01 9 96408055 96408055 C T PHF2 Silent p.D148D 0.24 TCGA-VQ-A91V-01 X 101623723 101623723 T G NXF2B Missense_Mutation p.Q213H 0.26 tolerated(0.15) benign(0.016) TCGA-VQ-A91V-01 X 105168815 105168815 A C NRK Missense_Mutation p.E1036A 0.89 tolerated(0.18) benign(0.022) TCGA-VQ-A91V-01 X 140335633 140335633 A G SPANXC 3'UTR 0.77 TCGA-VQ-A91V-01 X 149945928 149945928 T C CD99L2 Missense_Mutation p.D175G 0.94 deleterious(0.01) probably_damaging(0.932) TCGA-VQ-A91V-01 X 150909305 150909305 T G CNGA2 Missense_Mutation p.D138E 0.80 tolerated(0.18) possibly_damaging(0.556) TCGA-VQ-A91V-01 X 152719918 152719918 C T HAUS7 Missense_Mutation p.E337K 0.64 tolerated(0.14) benign(0.081) TCGA-VQ-A91V-01 X 153170624 153170624 G A AVPR2 Missense_Mutation p.A9T 0.89 tolerated_low_confidence(0.18) benign(0.207) TCGA-VQ-A91V-01 X 30237207 30237207 A C MAGEB2 Missense_Mutation p.K170N 0.91 deleterious(0) possibly_damaging(0.464) TCGA-VQ-A91V-01 X 30254478 30254478 A G MAGEB3 Missense_Mutation p.K146R 0.85 tolerated(0.29) benign(0.004) TCGA-VQ-A91V-01 X 30269103 30269103 T G MAGEB1 Missense_Mutation p.L165V 0.89 tolerated(0.3) possibly_damaging(0.811) TCGA-VQ-A91V-01 X 6069222 6069222 A G NLGN4X Missense_Mutation p.S96P 0.86 tolerated(0.52) probably_damaging(0.979) TCGA-VQ-A91V-01 X 66941783 66941783 A C AR Missense_Mutation p.K809N 0.72 deleterious(0) probably_damaging(0.997) TCGA-VQ-A91V-01 X 77913703 77913703 G T ZCCHC5 Missense_Mutation p.A72E 0.81 tolerated_low_confidence(0.24) benign(0.003) TCGA-VQ-A91V-01 X 86887246 86887246 A C KLHL4 Missense_Mutation p.N454T 0.69 deleterious(0.04) probably_damaging(0.999) TCGA-VQ-A91V-01 X 86919925 86919925 A C KLHL4 Missense_Mutation p.E696A 0.92 deleterious(0.04) probably_damaging(0.997) TCGA-VQ-A91V-01 X 88008469 88008469 T G CPXCR1 Missense_Mutation p.N18K 0.67 deleterious(0.01) possibly_damaging(0.859) TCGA-VQ-A91V-01 X 89177253 89177253 T A TGIF2LX Missense_Mutation p.L57M 0.74 deleterious(0.01) possibly_damaging(0.601) TCGA-VQ-A91W-01 10 106907478 106907478 T G SORCS3 Missense_Mutation p.I469S 0.28 deleterious(0) benign(0.082) TCGA-VQ-A91W-01 10 98714844 98714844 C T LCOR Missense_Mutation p.S156F 0.07 deleterious(0) benign(0.069) TCGA-VQ-A91W-01 11 57004043 57004043 C T APLNR Missense_Mutation p.G146R 0.29 tolerated(0.61) probably_damaging(0.957) TCGA-VQ-A91W-01 11 60183347 60183347 A G MS4A14 Silent p.Q335Q 0.26 TCGA-VQ-A91W-01 11 89531678 89531678 T G TRIM49 Missense_Mutation p.S327R 0.12 tolerated(0.18) benign(0.025) TCGA-VQ-A91W-01 12 115118713 115118714 - G TBX3 Frame_Shift_Ins p.T210Hfs*17 0.16 TCGA-VQ-A91W-01 12 80187696 80187696 C T PPP1R12A Missense_Mutation p.E866K 0.25 tolerated(0.17) benign(0.427) TCGA-VQ-A91W-01 12 85255455 85255455 A G SLC6A15 Silent p.L717L 0.27 TCGA-VQ-A91W-01 14 20404516 20404516 A C OR4K1 Missense_Mutation p.S231R 0.26 tolerated(0.18) benign(0.021) TCGA-VQ-A91W-01 14 94512218 94512218 C G OTUB2 Missense_Mutation p.L219V 0.24 deleterious(0) probably_damaging(0.998) TCGA-VQ-A91W-01 16 31422649 31422649 C T ITGAD Silent p.D506D 0.26 TCGA-VQ-A91W-01 16 68598587 68598587 C T ZFP90 Nonsense_Mutation p.R633* 0.26 TCGA-VQ-A91W-01 16 89261428 89261428 G T CDH15 Silent p.G770G 0.35 TCGA-VQ-A91W-01 17 10219320 10219320 C T MYH13 Missense_Mutation p.R1254Q 0.28 deleterious(0.03) benign(0.005) TCGA-VQ-A91W-01 17 74774436 74774436 C A MFSD11 3'UTR 0.15 TCGA-VQ-A91W-01 18 21355780 21355780 C T LAMA3 Missense_Mutation p.A433V 0.37 possibly_damaging(0.858) TCGA-VQ-A91W-01 18 346537 346537 C A COLEC12 Missense_Mutation p.S362I 0.06 tolerated(0.11) possibly_damaging(0.651) TCGA-VQ-A91W-01 18 65178467 65178467 A C DSEL Missense_Mutation p.F1137V 0.20 tolerated(0.19) possibly_damaging(0.481) TCGA-VQ-A91W-01 19 48965338 48965338 C T KCNJ14 Silent p.A119A 0.29 TCGA-VQ-A91W-01 1 100483329 100483329 C G SLC35A3 Missense_Mutation p.T282R 0.24 deleterious(0.03) possibly_damaging(0.824) TCGA-VQ-A91W-01 1 147230821 147230821 C T GJA5 Missense_Mutation p.G176R 0.24 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91W-01 1 158614052 158614052 G - SPTA1 Frame_Shift_Del p.T1444Lfs*10 0.16 TCGA-VQ-A91W-01 1 17250933 17250933 C T CROCC Missense_Mutation p.R104C 0.21 probably_damaging(0.997) TCGA-VQ-A91W-01 1 175328863 175328863 C A TNR Missense_Mutation p.M953I 0.24 deleterious(0.01) benign(0.005) TCGA-VQ-A91W-01 2 1687491 1687491 T G PXDN Missense_Mutation p.H166P 0.33 deleterious(0) probably_damaging(0.94) TCGA-VQ-A91W-01 2 175268982 175268982 C A SCRN3 Silent p.A231A 0.29 TCGA-VQ-A91W-01 2 179646951 179646951 G A TTN Missense_Mutation p.T1123I 0.33 TCGA-VQ-A91W-01 2 206605324 206605324 C T NRP2 Missense_Mutation p.R410C 0.22 deleterious(0) probably_damaging(1) TCGA-VQ-A91W-01 2 232087506 232087506 C A ARMC9 Missense_Mutation p.S190R 0.13 tolerated(0.19) benign(0.232) TCGA-VQ-A91W-01 2 71300643 71300643 A T NAGK Silent p.I212I 0.32 TCGA-VQ-A91W-01 3 178922321 178922321 G A PIK3CA Missense_Mutation p.G364R 0.28 tolerated(0.27) benign(0.15) TCGA-VQ-A91W-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.19 deleterious(0.04) probably_damaging(0.96) TCGA-VQ-A91W-01 3 30732970 30732970 G A TGFBR2 Missense_Mutation p.R553H 0.30 deleterious(0) probably_damaging(1) TCGA-VQ-A91W-01 3 41266104 41266104 G A CTNNB1 Missense_Mutation p.G34E 0.20 deleterious(0.03) probably_damaging(0.993) TCGA-VQ-A91W-01 4 1389240 1389240 G A CRIPAK Missense_Mutation p.R314H 0.54 tolerated(0.15) benign(0.001) TCGA-VQ-A91W-01 4 186291928 186291928 C T LRP2BP Missense_Mutation p.A282T 0.31 deleterious(0) benign(0.12) TCGA-VQ-A91W-01 4 187455522 187455522 C T MTNR1A Missense_Mutation p.R125H 0.20 deleterious(0.04) probably_damaging(0.978) TCGA-VQ-A91W-01 5 140201646 140201646 C T PCDHA5 Missense_Mutation p.R96W 0.32 deleterious_low_confidence(0) possibly_damaging(0.571) TCGA-VQ-A91W-01 5 140627234 140627234 G A PCDHB15 Silent p.S696S 0.24 TCGA-VQ-A91W-01 5 57754604 57754604 T C PLK2 Missense_Mutation p.Y148C 0.14 deleterious(0) possibly_damaging(0.807) TCGA-VQ-A91W-01 6 10586484 10586484 C T GCNT2 Intron 0.18 TCGA-VQ-A91W-01 6 152415615 152415615 C T ESR1 Silent p.L489L 0.22 TCGA-VQ-A91W-01 6 56357148 56357148 C T DST Silent p.Q4255Q 0.26 TCGA-VQ-A91W-01 7 113518608 113518608 C A PPP1R3A Nonsense_Mutation p.E847* 0.19 TCGA-VQ-A91W-01 7 44180371 44180371 C T MYL7 Missense_Mutation p.D45N 0.12 deleterious(0) probably_damaging(0.997) TCGA-VQ-A91W-01 7 63809152 63809152 A C ZNF736 Missense_Mutation p.K304T 0.27 deleterious(0.03) probably_damaging(0.996) TCGA-VQ-A91W-01 8 142229121 142229121 G A SLC45A4 Silent p.G155G 0.20 TCGA-VQ-A91W-01 8 69129856 69129856 C A PREX2 Missense_Mutation p.T1537N 0.30 deleterious(0) probably_damaging(0.991) TCGA-VQ-A91W-01 9 34646693 34646693 G T GALT 5'UTR 0.31 TCGA-VQ-A91W-01 9 35738845 35738845 C - GBA2 Frame_Shift_Del p.W617* 0.12 TCGA-VQ-A91W-01 X 150349467 150349467 C T GPR50 Missense_Mutation p.S471F 0.33 deleterious_low_confidence(0) benign(0.365) TCGA-VQ-A91W-01 Y 6911100 6911100 G A TBL1Y Silent p.P46P 0.60 TCGA-VQ-A91X-01 10 118969296 118969296 T G KCNK18 Missense_Mutation p.L214R 0.07 tolerated(0.42) benign(0.032) TCGA-VQ-A91X-01 10 127417641 127417641 A G EDRF1 Missense_Mutation p.I288V 0.25 tolerated_low_confidence(0.55) benign(0) TCGA-VQ-A91X-01 10 15255959 15255959 C T FAM171A1 Missense_Mutation p.R543Q 0.34 tolerated(0.46) probably_damaging(0.999) TCGA-VQ-A91X-01 10 18134068 18134068 G A MRC1 Intron 0.14 TCGA-VQ-A91X-01 10 20466319 20466319 T C PLXDC2 Missense_Mutation p.W348R 0.20 deleterious(0) probably_damaging(0.971) TCGA-VQ-A91X-01 10 33468913 33468913 C T NRP1 3'UTR 0.07 TCGA-VQ-A91X-01 10 69959330 69959330 T C MYPN Missense_Mutation p.V1164A 0.37 tolerated(0.75) probably_damaging(0.984) TCGA-VQ-A91X-01 11 102816400 102816400 T G MMP13 Missense_Mutation p.K430N 0.16 tolerated(0.08) benign(0.002) TCGA-VQ-A91X-01 11 121061436 121061436 T G TECTA Missense_Mutation p.L2130R 0.17 tolerated_low_confidence(0.47) benign(0) TCGA-VQ-A91X-01 11 123993819 123993819 C T VWA5A Nonsense_Mutation p.R305* 0.67 TCGA-VQ-A91X-01 11 128642692 128642692 C T FLI1 Missense_Mutation p.T134I 0.15 deleterious(0) benign(0.318) TCGA-VQ-A91X-01 11 19077637 19077637 A G MRGPRX2 Missense_Mutation p.F105L 0.21 tolerated(1) benign(0.006) TCGA-VQ-A91X-01 11 22271882 22271882 T G ANO5 Missense_Mutation p.I326M 0.13 tolerated(0.09) benign(0.111) TCGA-VQ-A91X-01 11 26742929 26742929 A C SLC5A12 Silent p.T111T 0.26 TCGA-VQ-A91X-01 11 32954704 32954705 - AA QSER1 Frame_Shift_Ins p.E506Kfs*33 0.28 TCGA-VQ-A91X-01 11 33631350 33631350 G A KIAA1549L Missense_Mutation p.R1409H 0.38 deleterious(0) probably_damaging(1) TCGA-VQ-A91X-01 11 431736 431736 C T ANO9 Missense_Mutation p.R166Q 0.41 tolerated(0.29) benign(0.003) TCGA-VQ-A91X-01 11 4566484 4566484 C A OR52M1 Missense_Mutation p.L22M 0.29 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91X-01 11 48267295 48267295 T G OR4X2 Missense_Mutation p.L214V 0.16 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91X-01 11 5068546 5068546 G T OR52J3 Missense_Mutation p.R264L 0.08 deleterious(0.01) probably_damaging(1) TCGA-VQ-A91X-01 11 5142746 5142746 G A OR52A4 RNA 0.79 TCGA-VQ-A91X-01 11 5566282 5566282 A G OR52H1 Missense_Mutation p.F158L 0.10 tolerated(1) benign(0.006) TCGA-VQ-A91X-01 11 62997098 62997098 T G SLC22A25 Missense_Mutation p.Q9H 0.48 tolerated(0.06) benign(0.019) TCGA-VQ-A91X-01 11 65036174 65036174 T C POLA2 Silent p.L110L 0.17 TCGA-VQ-A91X-01 11 66052204 66052204 G A YIF1A Silent p.P262P 0.11 TCGA-VQ-A91X-01 11 687959 687959 G A DEAF1 Missense_Mutation p.R206W 0.23 deleterious(0) probably_damaging(1) TCGA-VQ-A91X-01 11 6898202 6898202 T G OR10A4 Missense_Mutation p.F108L 0.21 tolerated(0.82) probably_damaging(0.998) TCGA-VQ-A91X-01 11 76893573 76893573 G T MYO7A Missense_Mutation p.M1071I 0.40 deleterious(0.05) probably_damaging(0.974) TCGA-VQ-A91X-01 11 82644647 82644647 C G C11orf82 Nonsense_Mutation p.S756* 0.11 TCGA-VQ-A91X-01 11 9005009 9005009 G A NRIP3 3'UTR 0.35 TCGA-VQ-A91X-01 11 9435802 9435802 G A IPO7 Silent p.E160E 0.07 TCGA-VQ-A91X-01 12 102164320 102164320 T G GNPTAB Missense_Mutation p.N326T 0.20 deleterious(0.04) probably_damaging(0.998) TCGA-VQ-A91X-01 12 105520106 105520106 A G KIAA1033 Missense_Mutation p.K335R 0.18 tolerated(0.14) possibly_damaging(0.823) TCGA-VQ-A91X-01 12 116421066 116421066 G A MED13L Missense_Mutation p.S1604F 0.29 tolerated(0.08) unknown(0) TCGA-VQ-A91X-01 12 49935485 49935485 T C KCNH3 Missense_Mutation p.V128A 0.38 tolerated(0.68) benign(0.124) TCGA-VQ-A91X-01 12 52789838 52789838 T A KRT82 Missense_Mutation p.E416V 0.35 deleterious(0) possibly_damaging(0.906) TCGA-VQ-A91X-01 12 52981452 52981452 C T KRT72 Missense_Mutation p.A425T 0.17 deleterious(0.02) benign(0.099) TCGA-VQ-A91X-01 12 53216836 53216836 G C KRT79 Missense_Mutation p.A444G 0.10 deleterious(0) probably_damaging(0.975) TCGA-VQ-A91X-01 12 53621219 53621219 C T RARG Silent p.P37P 0.17 TCGA-VQ-A91X-01 12 55420476 55420476 T A NEUROD4 Missense_Mutation p.F85I 0.12 tolerated(0.06) probably_damaging(0.998) TCGA-VQ-A91X-01 12 66152403 66152403 G A RPSAP52 RNA 0.35 TCGA-VQ-A91X-01 12 72956792 72956792 A C TRHDE Missense_Mutation p.T627P 0.15 tolerated(0.28) benign(0) TCGA-VQ-A91X-01 12 97114299 97114299 T C C12orf55 Silent p.L2307L 0.07 TCGA-VQ-A91X-01 12 9907665 9907665 T C CD69 Missense_Mutation p.K127R 0.62 tolerated(0.06) possibly_damaging(0.525) TCGA-VQ-A91X-01 13 101833582 101833582 A C NALCN Intron 0.14 TCGA-VQ-A91X-01 13 30096544 30096544 C T SLC7A1 Missense_Mutation p.E367K 0.30 tolerated(0.19) benign(0.158) TCGA-VQ-A91X-01 13 46946266 46946266 A C KIAA0226L Silent p.A115A 0.34 TCGA-VQ-A91X-01 13 51854602 51854602 A C FAM124A Missense_Mutation p.K320T 0.36 tolerated(0.08) benign(0.108) TCGA-VQ-A91X-01 13 79190255 79190255 C A RNF219 Missense_Mutation p.E547D 0.15 deleterious(0.01) benign(0.44) TCGA-VQ-A91X-01 14 21058673 21058673 A G RNASE12 Silent p.H70H 0.26 TCGA-VQ-A91X-01 14 22509369 22509369 G A TRAV20 Missense_Mutation p.D103N 0.12 deleterious(0) probably_damaging(0.997) TCGA-VQ-A91X-01 14 34985475 34985475 C T EAPP 3'UTR 0.23 TCGA-VQ-A91X-01 14 62261752 62261752 G T SNAPC1 3'UTR 0.33 TCGA-VQ-A91X-01 14 64591812 64591812 G C SYNE2 Missense_Mutation p.G4480R 0.17 benign(0.268) TCGA-VQ-A91X-01 14 80963839 80963840 - T CEP128 Frame_Shift_Ins p.E1090Rfs*11 0.15 TCGA-VQ-A91X-01 14 86087980 86087980 G T FLRT2 Missense_Mutation p.R41L 0.32 deleterious(0) probably_damaging(1) TCGA-VQ-A91X-01 15 25969111 25969111 T G ATP10A Missense_Mutation p.K346T 0.12 tolerated(0.08) benign(0.016) TCGA-VQ-A91X-01 15 74043491 74043491 G A C15orf59 5'UTR 0.21 TCGA-VQ-A91X-01 15 90800502 90800502 C T TTLL13 Missense_Mutation p.H280Y 0.09 tolerated(0.06) benign(0) TCGA-VQ-A91X-01 16 12140275 12140275 G A SNX29 Missense_Mutation p.E155K 0.50 deleterious(0.03) possibly_damaging(0.771) TCGA-VQ-A91X-01 16 3165863 3165863 G A ZNF205 Missense_Mutation p.R102Q 0.44 tolerated(0.29) benign(0.032) TCGA-VQ-A91X-01 16 3350707 3350707 C T TIGD7 5'UTR 0.77 TCGA-VQ-A91X-01 16 70358498 70358498 T C DDX19B Silent p.L134L 0.12 TCGA-VQ-A91X-01 16 76573741 76573741 T G CNTNAP4 Missense_Mutation p.F1043V 0.36 tolerated(0.38) benign(0.008) TCGA-VQ-A91X-01 16 8875257 8875257 T G ABAT Missense_Mutation p.I491M 0.30 tolerated(0.11) benign(0.424) TCGA-VQ-A91X-01 17 12028615 12028615 A G MAP2K4 Missense_Mutation p.E273G 0.61 deleterious(0) possibly_damaging(0.623) TCGA-VQ-A91X-01 17 15535913 15535913 C T RP11-385D13.1 Missense_Mutation p.G309S 0.21 tolerated_low_confidence(0.37) benign(0.413) TCGA-VQ-A91X-01 17 18025419 18025420 - G MYO15A Frame_Shift_Ins p.E1105* 0.17 TCGA-VQ-A91X-01 17 39784276 39784276 C T KRT17 5'Flank 0.03 TCGA-VQ-A91X-01 17 40048663 40048663 C T ACLY Missense_Mutation p.E547K 0.04 deleterious(0.01) possibly_damaging(0.72) TCGA-VQ-A91X-01 17 40048685 40048685 C G ACLY Missense_Mutation p.Q539H 0.04 deleterious(0.03) probably_damaging(0.997) TCGA-VQ-A91X-01 17 40048697 40048697 C T ACLY Silent p.G535G 0.04 TCGA-VQ-A91X-01 17 40451889 40451889 A T STAT5A Missense_Mutation p.Q224L 0.23 deleterious(0.05) benign(0.018) TCGA-VQ-A91X-01 17 41930353 41930353 A T CD300LG Missense_Mutation p.K151N 0.12 tolerated(0.08) benign(0.13) TCGA-VQ-A91X-01 17 47797756 47797756 G A FAM117A Missense_Mutation p.R169C 0.09 deleterious(0) probably_damaging(0.991) TCGA-VQ-A91X-01 17 48264236 48264236 G A COL1A1 Silent p.S1193S 0.21 TCGA-VQ-A91X-01 17 48545860 48545861 - T CHAD Nonsense_Mutation p.Y105* 0.08 TCGA-VQ-A91X-01 17 59479141 59479141 C G TBX2 Silent p.R164R 0.30 TCGA-VQ-A91X-01 17 72541053 72541053 G A CD300C Missense_Mutation p.A32V 0.38 deleterious(0.01) benign(0.081) TCGA-VQ-A91X-01 17 7578272 7578272 G A TP53 Missense_Mutation p.H193Y 0.54 deleterious(0) probably_damaging(1) TCGA-VQ-A91X-01 17 7951713 7951713 G C ALOX15B Missense_Mutation p.G621R 0.52 deleterious(0) probably_damaging(1) TCGA-VQ-A91X-01 17 8135328 8135328 C A CTC1 Missense_Mutation p.A760S 0.25 tolerated(0.22) benign(0.052) TCGA-VQ-A91X-01 18 2544667 2544668 - T METTL4 Frame_Shift_Ins p.T389Nfs*32 0.39 TCGA-VQ-A91X-01 18 28972152 28972152 C T DSG4 Missense_Mutation p.S285L 0.37 deleterious(0) possibly_damaging(0.718) TCGA-VQ-A91X-01 18 7038884 7038884 G T LAMA1 Missense_Mutation p.N496K 0.18 deleterious(0) probably_damaging(0.955) TCGA-VQ-A91X-01 18 72345422 72345422 T C ZNF407 Missense_Mutation p.L816P 0.15 tolerated(0.25) benign(0.003) TCGA-VQ-A91X-01 19 16003198 16003198 C T CYP4F2 Missense_Mutation p.R149Q 0.36 deleterious(0.02) benign(0.323) TCGA-VQ-A91X-01 19 16038104 16038104 C T CYP4F11 Missense_Mutation p.R148H 0.30 deleterious(0.01) probably_damaging(0.981) TCGA-VQ-A91X-01 19 22941879 22941879 T G ZNF99 Missense_Mutation p.I278L 0.20 tolerated(0.05) probably_damaging(0.992) TCGA-VQ-A91X-01 19 43709661 43709661 T A PSG4 Missense_Mutation p.T10S 0.10 tolerated(0.49) benign(0.248) TCGA-VQ-A91X-01 19 46388120 46388120 C A IRF2BP1 Missense_Mutation p.G305C 0.56 deleterious(0) probably_damaging(0.979) TCGA-VQ-A91X-01 19 48183860 48183860 C T GLTSCR1 Missense_Mutation p.P478L 0.18 unknown(0) TCGA-VQ-A91X-01 19 53057737 53057737 G T ZNF808 Missense_Mutation p.R523L 0.25 tolerated(0.63) benign(0.002) TCGA-VQ-A91X-01 19 58004995 58004995 A C ZNF419 Missense_Mutation p.N358T 0.14 tolerated(0.15) benign(0.078) TCGA-VQ-A91X-01 1 109795119 109795119 C T CELSR2 Silent p.N806N 0.12 TCGA-VQ-A91X-01 1 111860309 111860309 C T CHIA Missense_Mutation p.R163C 0.11 tolerated(0.17) benign(0.068) TCGA-VQ-A91X-01 1 114223866 114223866 T C MAGI3 Missense_Mutation p.I1079T 0.15 deleterious(0) probably_damaging(1) TCGA-VQ-A91X-01 1 115428173 115428173 T C SYCP1 Silent p.L310L 0.19 TCGA-VQ-A91X-01 1 147090696 147090696 C T BCL9 Silent p.D245D 0.13 TCGA-VQ-A91X-01 1 153391760 153391760 C T S100A7A Missense_Mutation p.A94V 0.19 tolerated(0.31) benign(0.002) TCGA-VQ-A91X-01 1 158747238 158747238 A C OR6N2 Missense_Mutation p.V63G 0.14 deleterious(0) possibly_damaging(0.594) TCGA-VQ-A91X-01 1 160389105 160389105 G A VANGL2 Missense_Mutation p.R169H 0.10 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91X-01 1 167830131 167830131 A T ADCY10 Missense_Mutation p.L596H 0.16 deleterious(0) probably_damaging(0.933) TCGA-VQ-A91X-01 1 167956773 167956773 G C DCAF6 Missense_Mutation p.C160S 0.21 deleterious(0.02) probably_damaging(0.99) TCGA-VQ-A91X-01 1 186062322 186062322 G A HMCN1 Missense_Mutation p.G3315E 0.12 probably_damaging(1) TCGA-VQ-A91X-01 1 202544297 202544297 C T PPP1R12B Intron 0.09 TCGA-VQ-A91X-01 1 204499834 204499834 A G MDM4 Missense_Mutation p.Y59C 0.07 deleterious(0) possibly_damaging(0.859) TCGA-VQ-A91X-01 1 231401827 231401827 T C GNPAT Silent p.I280I 0.04 TCGA-VQ-A91X-01 1 247582264 247582264 G A NLRP3 Silent p.T56T 0.32 TCGA-VQ-A91X-01 1 248343715 248343715 T G OR2M2 Missense_Mutation p.L143R 0.15 tolerated(0.2) benign(0.429) TCGA-VQ-A91X-01 1 248525194 248525194 G A OR2T4 Silent p.A104A 0.04 TCGA-VQ-A91X-01 1 33150184 33150184 A G RBBP4 3'UTR 0.67 TCGA-VQ-A91X-01 1 34182061 34182061 G A CSMD2 Silent p.G974G 0.44 TCGA-VQ-A91X-01 1 52943474 52943474 A G ZCCHC11 Silent p.D643D 0.27 TCGA-VQ-A91X-01 1 52991562 52991562 A C ZCCHC11 Missense_Mutation p.S131A 0.19 tolerated_low_confidence(0.13) benign(0.001) TCGA-VQ-A91X-01 1 55330998 55330998 C T DHCR24 Missense_Mutation p.R333H 0.25 deleterious(0.02) benign(0.168) TCGA-VQ-A91X-01 1 65146952 65146952 C T CACHD1 Missense_Mutation p.R1089C 0.11 deleterious(0) probably_damaging(0.982) TCGA-VQ-A91X-01 1 91816414 91816414 A C HFM1 Missense_Mutation p.L696R 0.17 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91X-01 20 10393242 10393242 C T MKKS Missense_Mutation p.M307I 0.29 tolerated(0.06) benign(0.001) TCGA-VQ-A91X-01 20 1108069 1108069 G A PSMF1 Missense_Mutation p.E95K 0.08 tolerated(0.22) benign(0.023) TCGA-VQ-A91X-01 20 23586467 23586467 C T CST9 Nonsense_Mutation p.W12* 0.22 TCGA-VQ-A91X-01 20 33703441 33703441 C G EDEM2 Missense_Mutation p.S511T 0.17 tolerated(0.62) benign(0.003) TCGA-VQ-A91X-01 20 43625850 43625850 G A STK4 Missense_Mutation p.R245Q 0.21 tolerated(0.09) benign(0.066) TCGA-VQ-A91X-01 20 62868001 62868001 T A MYT1 Splice_Site p.X997_splice 0.07 TCGA-VQ-A91X-01 21 28338235 28338235 T G ADAMTS5 Missense_Mutation p.K159T 0.33 tolerated(0.16) benign(0.428) TCGA-VQ-A91X-01 21 34632943 34632943 T - IFNAR2 Frame_Shift_Del p.L252* 0.18 TCGA-VQ-A91X-01 21 41684034 41684034 T C DSCAM Missense_Mutation p.E679G 0.23 deleterious(0.03) benign(0.403) TCGA-VQ-A91X-01 21 43522293 43522293 G A UMODL1 Missense_Mutation p.V402I 0.42 tolerated(0.21) possibly_damaging(0.754) TCGA-VQ-A91X-01 22 22937461 22937461 T C IGLV3-32 Silent p.T93T 0.18 TCGA-VQ-A91X-01 22 37770839 37770839 G A ELFN2 Missense_Mutation p.R246W 0.15 deleterious(0.02) possibly_damaging(0.834) TCGA-VQ-A91X-01 2 107460073 107460073 G T ST6GAL2 Missense_Mutation p.Q121K 0.12 benign(0.002) TCGA-VQ-A91X-01 2 133542007 133542007 C A NCKAP5 Missense_Mutation p.G793C 0.21 deleterious(0) probably_damaging(0.986) TCGA-VQ-A91X-01 2 141055509 141055509 A C LRP1B Missense_Mutation p.F4279V 0.16 possibly_damaging(0.637) TCGA-VQ-A91X-01 2 141259388 141259388 A G LRP1B Silent p.S2906S 0.10 TCGA-VQ-A91X-01 2 141812799 141812799 A G LRP1B Missense_Mutation p.Y480H 0.15 possibly_damaging(0.608) TCGA-VQ-A91X-01 2 152467294 152467294 A C NEB Missense_Mutation p.N3964K 0.31 probably_damaging(0.999) TCGA-VQ-A91X-01 2 152551103 152551103 T G NEB Missense_Mutation p.K572T 0.28 probably_damaging(0.995) TCGA-VQ-A91X-01 2 170558151 170558151 G T PHOSPHO2 Missense_Mutation p.V224F 0.19 deleterious(0.03) benign(0.232) TCGA-VQ-A91X-01 2 179443661 179443661 T C TTN Missense_Mutation p.Q22699R 0.21 TCGA-VQ-A91X-01 2 179467235 179467235 T G TTN Missense_Mutation p.K18298N 0.21 TCGA-VQ-A91X-01 2 179472623 179472623 C T TTN Missense_Mutation p.V17631I 0.40 TCGA-VQ-A91X-01 2 179587602 179587602 A C TTN Missense_Mutation p.L7342V 0.24 TCGA-VQ-A91X-01 2 186670832 186670832 T C FSIP2 Missense_Mutation p.L5689P 0.17 benign(0.022) TCGA-VQ-A91X-01 2 197710648 197710648 T C PGAP1 Silent p.G748G 0.17 TCGA-VQ-A91X-01 2 198950027 198950027 C T PLCL1 Nonsense_Mutation p.Q596* 0.14 TCGA-VQ-A91X-01 2 210561456 210561456 A C MAP2 Missense_Mutation p.E1457D 0.21 deleterious(0.02) probably_damaging(0.959) TCGA-VQ-A91X-01 2 233399901 233399901 C T CHRND Missense_Mutation p.T478M 0.25 tolerated(0.09) probably_damaging(0.973) TCGA-VQ-A91X-01 2 29295776 29295776 C T C2orf71 Missense_Mutation p.G451E 0.14 tolerated(0.34) benign(0.022) TCGA-VQ-A91X-01 2 40656259 40656259 T G SLC8A1 Silent p.R388R 0.18 TCGA-VQ-A91X-01 2 73053106 73053106 G A EXOC6B 5'UTR 0.45 TCGA-VQ-A91X-01 2 88829054 88829054 A T TEX37 3'UTR 0.20 TCGA-VQ-A91X-01 3 100963575 100963575 T G IMPG2 Missense_Mutation p.S534R 0.20 deleterious(0.01) possibly_damaging(0.556) TCGA-VQ-A91X-01 3 113442283 113442283 C T NAA50 Missense_Mutation p.R84Q 0.25 deleterious(0) probably_damaging(1) TCGA-VQ-A91X-01 3 130283948 130283948 G T COL6A6 Missense_Mutation p.A258S 0.15 tolerated(1) probably_damaging(0.999) TCGA-VQ-A91X-01 3 131388593 131388593 A G CPNE4 Silent p.L203L 0.19 TCGA-VQ-A91X-01 3 13363699 13363699 C A NUP210 Missense_Mutation p.A1637S 0.48 tolerated(0.63) benign(0.006) TCGA-VQ-A91X-01 3 1415693 1415693 C T CNTN6 Silent p.A677A 0.11 TCGA-VQ-A91X-01 3 154146808 154146808 A T GPR149 Silent p.A199A 0.12 TCGA-VQ-A91X-01 3 164760892 164760892 C T SI Silent p.G653G 0.09 TCGA-VQ-A91X-01 3 173525594 173525594 C T NLGN1 Silent p.I206I 0.27 TCGA-VQ-A91X-01 3 186272376 186272376 C T TBCCD1 Missense_Mutation p.R404H 0.11 tolerated(0.05) benign(0.047) TCGA-VQ-A91X-01 3 186974451 186974451 C A MASP1 Splice_Site p.X248_splice 0.52 TCGA-VQ-A91X-01 3 27216306 27216306 T G NEK10 Missense_Mutation p.S842R 0.23 deleterious(0.02) possibly_damaging(0.762) TCGA-VQ-A91X-01 3 44685536 44685536 A G ZNF197 Missense_Mutation p.N972D 0.50 tolerated(0.71) benign(0.437) TCGA-VQ-A91X-01 3 46415294 46415294 G A CCR5 Missense_Mutation p.G301R 0.43 deleterious(0) possibly_damaging(0.72) TCGA-VQ-A91X-01 3 52257646 52257646 T C TLR9 Missense_Mutation p.Y383C 0.25 deleterious(0.03) probably_damaging(0.999) TCGA-VQ-A91X-01 3 77623703 77623703 T G ROBO2 Silent p.T691T 0.23 TCGA-VQ-A91X-01 4 114199051 114199051 T G ANK2 Missense_Mutation p.L581R 0.24 probably_damaging(1) TCGA-VQ-A91X-01 4 115773899 115773899 T G NDST4 Missense_Mutation p.I600L 0.15 tolerated(0.08) possibly_damaging(0.72) TCGA-VQ-A91X-01 4 126238208 126238208 G A FAT4 Silent p.P214P 0.31 TCGA-VQ-A91X-01 4 141463783 141463783 C A ELMOD2 Missense_Mutation p.H197N 0.21 deleterious(0.04) benign(0.065) TCGA-VQ-A91X-01 4 154625489 154625489 C T TLR2 Missense_Mutation p.P477L 0.06 deleterious(0.01) probably_damaging(1) TCGA-VQ-A91X-01 4 175598420 175598420 G A GLRA3 Nonsense_Mutation p.R246* 0.17 TCGA-VQ-A91X-01 4 38776392 38776392 A G TLR10 Missense_Mutation p.F274L 0.32 tolerated(0.88) benign(0.009) TCGA-VQ-A91X-01 4 5624349 5624349 C T EVC2 Missense_Mutation p.V806M 0.44 tolerated(0.06) probably_damaging(0.999) TCGA-VQ-A91X-01 4 66197734 66197734 T G EPHA5 Missense_Mutation p.N989H 0.34 deleterious(0) possibly_damaging(0.832) TCGA-VQ-A91X-01 4 70146841 70146841 T C UGT2B28 Missense_Mutation p.M208T 0.41 tolerated(0.19) benign(0.013) TCGA-VQ-A91X-01 4 94411886 94411886 T G GRID2 Missense_Mutation p.L652R 0.19 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91X-01 5 102262353 102262353 G T PAM Silent p.G169G 0.05 TCGA-VQ-A91X-01 5 118487713 118487713 G A DMXL1 Missense_Mutation p.A1562T 0.05 tolerated(0.09) probably_damaging(0.992) TCGA-VQ-A91X-01 5 13870984 13870984 T A DNAH5 Missense_Mutation p.K1242N 0.23 benign(0.403) TCGA-VQ-A91X-01 5 140250863 140250863 G A PCDHA11 Silent p.T725T 0.12 TCGA-VQ-A91X-01 5 140605207 140605207 G A PCDHB14 Silent p.A710A 0.21 TCGA-VQ-A91X-01 5 140615992 140615992 C T PCDHB18 RNA 0.22 TCGA-VQ-A91X-01 5 147593505 147593505 C A SPINK6 Silent p.V38V 0.20 TCGA-VQ-A91X-01 5 150867919 150867919 T G SLC36A1 3'UTR 0.37 TCGA-VQ-A91X-01 5 150946094 150946094 T C FAT2 Missense_Mutation p.K800R 0.26 benign(0.042) TCGA-VQ-A91X-01 5 167689729 167689729 G T TENM2 Missense_Mutation p.V2747L 0.24 deleterious(0.01) benign(0.053) TCGA-VQ-A91X-01 5 178373468 178373468 A G ZNF454 Missense_Mutation p.S48G 0.20 tolerated(0.24) benign(0.005) TCGA-VQ-A91X-01 5 31983574 31983574 T G PDZD2 Missense_Mutation p.F264V 0.23 tolerated(0.14) benign(0.231) TCGA-VQ-A91X-01 5 37183014 37183014 T G C5orf42 Silent p.R1757R 0.23 TCGA-VQ-A91X-01 5 44305192 44305192 C T FGF10 Missense_Mutation p.V178M 0.25 deleterious(0) probably_damaging(1) TCGA-VQ-A91X-01 5 74865286 74865286 A C POLK Missense_Mutation p.K126T 0.28 deleterious(0.01) probably_damaging(0.997) TCGA-VQ-A91X-01 5 79030540 79030540 A T CMYA5 Missense_Mutation p.E1984D 0.26 probably_damaging(0.935) TCGA-VQ-A91X-01 5 9629331 9629331 C A TAS2R1 Nonsense_Mutation p.G272* 0.16 TCGA-VQ-A91X-01 6 10961579 10961579 A T SYCP2L Missense_Mutation p.E766V 0.09 deleterious(0) probably_damaging(0.925) TCGA-VQ-A91X-01 6 11104992 11104992 A G ERVFRD-1 Silent p.T184T 0.16 TCGA-VQ-A91X-01 6 125404041 125404042 - A RNF217 Frame_Shift_Ins 0.32 TCGA-VQ-A91X-01 6 139094908 139094908 A G CCDC28A Missense_Mutation p.K33E 0.13 deleterious_low_confidence(0) benign(0.067) TCGA-VQ-A91X-01 6 146708114 146708114 C A GRM1 Missense_Mutation p.A564D 0.26 tolerated(0.07) possibly_damaging(0.678) TCGA-VQ-A91X-01 6 149342483 149342483 A G UST Missense_Mutation p.E268G 0.27 deleterious(0) possibly_damaging(0.507) TCGA-VQ-A91X-01 6 152163733 152163733 C A ESR1 Missense_Mutation p.P152T 0.19 tolerated(0.05) benign(0.347) TCGA-VQ-A91X-01 6 152717982 152717982 T C SYNE1 Missense_Mutation p.E2495G 0.29 benign(0.027) TCGA-VQ-A91X-01 6 159183199 159183199 A G SYTL3 Silent p.S502S 0.13 TCGA-VQ-A91X-01 6 168457881 168457881 C T FRMD1 Missense_Mutation p.A516T 0.23 tolerated(0.29) benign(0.003) TCGA-VQ-A91X-01 6 17556595 17556595 A C CAP2 Missense_Mutation p.E452D 0.62 deleterious(0) probably_damaging(0.992) TCGA-VQ-A91X-01 6 21201389 21201389 G A CDKAL1 Missense_Mutation p.D478N 0.49 tolerated(0.21) benign(0.005) TCGA-VQ-A91X-01 6 3127585 3127585 C T BPHL Silent p.R107R 0.73 TCGA-VQ-A91X-01 6 3273438 3273438 G A SLC22A23 Missense_Mutation p.R638C 0.47 deleterious(0.02) benign(0.429) TCGA-VQ-A91X-01 6 38980354 38980354 C T DNAH8 Missense_Mutation p.T4335M 0.27 possibly_damaging(0.803) TCGA-VQ-A91X-01 6 43307978 43307978 G T ZNF318 Missense_Mutation p.T1253N 0.27 benign(0.076) TCGA-VQ-A91X-01 6 46677134 46677134 T - PLA2G7 Frame_Shift_Del p.I267* 0.21 TCGA-VQ-A91X-01 6 51777179 51777179 A G PKHD1 Missense_Mutation p.L2106P 0.14 deleterious(0) probably_damaging(0.977) TCGA-VQ-A91X-01 6 52303295 52303295 G T EFHC1 Missense_Mutation p.G160V 0.30 deleterious(0) probably_damaging(0.977) TCGA-VQ-A91X-01 6 54122105 54122105 G T MLIP Splice_Site p.X440_splice 0.15 TCGA-VQ-A91X-01 6 56362211 56362211 G A DST Missense_Mutation p.P4107L 0.26 probably_damaging(1) TCGA-VQ-A91X-01 6 73952180 73952181 - A KHDC1 Frame_Shift_Ins p.H94Sfs*21 0.21 TCGA-VQ-A91X-01 6 76023058 76023058 T A FILIP1 Missense_Mutation p.E830D 0.11 tolerated(0.07) probably_damaging(0.996) TCGA-VQ-A91X-01 6 76660301 76660301 A G IMPG1 Missense_Mutation p.L601P 0.42 deleterious(0) probably_damaging(1) TCGA-VQ-A91X-01 6 76731920 76731920 T G IMPG1 Silent p.S193S 0.21 TCGA-VQ-A91X-01 6 93969194 93969194 T G EPHA7 Missense_Mutation p.K601T 0.11 tolerated(0.16) benign(0.093) TCGA-VQ-A91X-01 7 128454724 128454724 G A CCDC136 Silent p.L932L 0.18 TCGA-VQ-A91X-01 7 137080395 137080395 C T DGKI Silent p.V1010V 0.41 TCGA-VQ-A91X-01 7 141727517 141727517 C T MGAM Silent p.R401R 0.15 TCGA-VQ-A91X-01 7 150324889 150324889 T C GIMAP6 Missense_Mutation p.E266G 0.34 tolerated(0.15) benign(0.012) TCGA-VQ-A91X-01 7 150839121 150839121 C T AGAP3 Silent p.C647C 0.09 TCGA-VQ-A91X-01 7 36895207 36895207 C T ELMO1 Silent p.P711P 0.09 TCGA-VQ-A91X-01 7 37355543 37355543 T C ELMO1 Missense_Mutation p.I34V 0.15 tolerated(0.07) benign(0.029) TCGA-VQ-A91X-01 7 48547583 48547583 T G ABCA13 Missense_Mutation p.L4488V 0.35 probably_damaging(1) TCGA-VQ-A91X-01 7 66760785 66760785 A T Y_RNA 3'Flank 0.28 TCGA-VQ-A91X-01 7 75694225 75694225 C A MDH2 Nonsense_Mutation p.S280* 0.12 TCGA-VQ-A91X-01 7 82579435 82579435 C A PCLO Missense_Mutation p.R3490M 0.36 unknown(0) TCGA-VQ-A91X-01 8 104427572 104427572 T C DCAF13 Silent p.T118T 0.30 TCGA-VQ-A91X-01 8 104831714 104831715 - G RIMS2 Intron 0.16 TCGA-VQ-A91X-01 8 10892742 10892742 A C XKR6 Intron 0.29 TCGA-VQ-A91X-01 8 113301604 113301604 A C CSMD3 Silent p.P3046P 0.24 TCGA-VQ-A91X-01 8 118159352 118159352 T C SLC30A8 Silent p.A77A 0.30 TCGA-VQ-A91X-01 8 124383484 124383484 T G ATAD2 Missense_Mutation p.T211P 0.16 deleterious(0.05) benign(0.008) TCGA-VQ-A91X-01 8 126093988 126093988 A C KIAA0196 Missense_Mutation p.L145V 0.54 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91X-01 8 13948116 13948116 C A SGCZ Nonsense_Mutation p.G259* 0.26 TCGA-VQ-A91X-01 8 144406675 144406675 T C TOP1MT Missense_Mutation p.N266D 0.10 deleterious(0.05) probably_damaging(0.972) TCGA-VQ-A91X-01 8 145773774 145773774 G A ARHGAP39 Silent p.Y232Y 0.38 TCGA-VQ-A91X-01 8 35541247 35541247 T G UNC5D Splice_Site p.X251_splice 0.18 TCGA-VQ-A91X-01 8 53853281 53853281 G A NPBWR1 Missense_Mutation p.V272M 0.33 deleterious(0.04) possibly_damaging(0.869) TCGA-VQ-A91X-01 8 57358286 57358286 C T PENK Intron 0.15 TCGA-VQ-A91X-01 8 59484833 59484833 G A SDCBP Missense_Mutation p.R67H 0.14 tolerated(0.1) benign(0.001) TCGA-VQ-A91X-01 8 69351667 69351667 A C C8orf34 Intron 0.30 TCGA-VQ-A91X-01 8 72969176 72969176 T A TRPA1 Missense_Mutation p.K390N 0.17 tolerated(0.1) benign(0.008) TCGA-VQ-A91X-01 8 77617873 77617873 T G ZFHX4 Missense_Mutation p.F517C 0.16 possibly_damaging(0.878) TCGA-VQ-A91X-01 9 13121754 13121754 T G MPDZ Missense_Mutation p.S1739R 0.19 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91X-01 9 131857739 131857739 G A CRAT Silent p.Y606Y 0.22 TCGA-VQ-A91X-01 9 132590510 132590510 C T C9orf78 Missense_Mutation p.R267H 0.08 deleterious(0.04) benign(0.081) TCGA-VQ-A91X-01 9 32630268 32630268 T G TAF1L Missense_Mutation p.E1770D 0.12 tolerated_low_confidence(0.14) probably_damaging(0.989) TCGA-VQ-A91X-01 9 73167897 73167897 A C TRPM3 Missense_Mutation p.L1134R 0.10 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91X-01 9 79960050 79960050 C T VPS13A Silent p.Y2427Y 0.13 TCGA-VQ-A91X-01 9 84605903 84605903 C A SPATA31D1 Missense_Mutation p.A173D 0.21 tolerated(0.06) benign(0.156) TCGA-VQ-A91X-01 9 96320198 96320198 G A FAM120A Silent p.P858P 0.15 TCGA-VQ-A91X-01 9 98728985 98728985 G A ERCC6L2 Missense_Mutation p.D708N 0.08 tolerated(0.06) possibly_damaging(0.597) TCGA-VQ-A91X-01 X 100349694 100349694 C A TMEM35 Missense_Mutation p.R85S 0.63 tolerated(0.14) benign(0.034) TCGA-VQ-A91X-01 X 111090452 111090452 A C TRPC5 Silent p.A530A 0.56 TCGA-VQ-A91X-01 X 137791063 137791063 T G FGF13 Missense_Mutation p.K82T 0.54 deleterious(0.01) possibly_damaging(0.892) TCGA-VQ-A91X-01 X 149101965 149101965 A G CXorf40B Missense_Mutation p.I43T 0.74 deleterious(0) benign(0.322) TCGA-VQ-A91X-01 X 30254145 30254145 A C MAGEB3 Missense_Mutation p.K35T 0.32 tolerated(0.05) benign(0.016) TCGA-VQ-A91X-01 X 30322701 30322701 T G NR0B1 Missense_Mutation p.I470L 0.27 tolerated(1) benign(0) TCGA-VQ-A91X-01 X 37586991 37586991 A C XK Missense_Mutation p.K204T 0.38 deleterious(0.01) possibly_damaging(0.904) TCGA-VQ-A91Y-01 10 1089877 1089877 C T IDI1 Intron 0.22 TCGA-VQ-A91Y-01 10 72619212 72619212 A C SGPL1 Missense_Mutation p.I191L 0.14 tolerated(0.1) benign(0.047) TCGA-VQ-A91Y-01 10 81060699 81060699 C T ZMIZ1 Silent p.C673C 0.22 TCGA-VQ-A91Y-01 10 92508681 92508681 G A HTR7 Missense_Mutation p.R404W 0.26 deleterious(0) probably_damaging(0.987) TCGA-VQ-A91Y-01 11 123900657 123900657 G A OR10G8 Missense_Mutation p.E110K 0.23 deleterious(0) benign(0.112) TCGA-VQ-A91Y-01 11 55861546 55861546 A T OR8I2 Missense_Mutation p.I255F 0.28 tolerated(0.17) possibly_damaging(0.543) TCGA-VQ-A91Y-01 11 59620717 59620717 G C TCN1 Missense_Mutation p.T400S 0.11 deleterious(0.02) probably_damaging(0.983) TCGA-VQ-A91Y-01 11 63672468 63672468 G A MARK2 Silent p.G629G 0.16 TCGA-VQ-A91Y-01 11 65266543 65266543 T G MALAT1 RNA 0.15 TCGA-VQ-A91Y-01 12 101433842 101433842 T C ANO4 Missense_Mutation p.L301S 0.22 deleterious(0) probably_damaging(1) TCGA-VQ-A91Y-01 12 22401947 22401947 G A ST8SIA1 Missense_Mutation p.R193W 0.19 deleterious(0.02) possibly_damaging(0.809) TCGA-VQ-A91Y-01 12 72667238 72667238 C T TRHDE Missense_Mutation p.A227V 0.16 tolerated(0.45) benign(0.007) TCGA-VQ-A91Y-01 13 25419175 25419175 C T RNF17 Missense_Mutation p.T1020I 0.13 tolerated(0.36) probably_damaging(0.976) TCGA-VQ-A91Y-01 13 33591029 33591029 A T KL Missense_Mutation p.I151F 0.20 tolerated(0.09) possibly_damaging(0.722) TCGA-VQ-A91Y-01 13 43491706 43491706 G A EPSTI1 Nonsense_Mutation p.Q249* 0.20 TCGA-VQ-A91Y-01 14 105413381 105413381 C T AHNAK2 Missense_Mutation p.D2803N 0.23 possibly_damaging(0.809) TCGA-VQ-A91Y-01 14 23863370 23863370 C T MYH6 Silent p.T864T 0.25 TCGA-VQ-A91Y-01 14 60097389 60097389 G A RTN1 Intron 0.40 TCGA-VQ-A91Y-01 14 61747022 61747035 CGCCCCGCGGCAGC - TMEM30B Frame_Shift_Del p.G281Qfs*108 0.31 TCGA-VQ-A91Y-01 14 65260379 65260379 C T SPTB Missense_Mutation p.D668N 0.13 deleterious(0) probably_damaging(0.998) TCGA-VQ-A91Y-01 14 96987359 96987359 A G PAPOLA Missense_Mutation p.K67E 0.15 deleterious(0.01) possibly_damaging(0.887) TCGA-VQ-A91Y-01 15 32929519 32929519 T C ARHGAP11A Silent p.L849L 0.23 TCGA-VQ-A91Y-01 17 7577522 7577522 G A TP53 Silent p.T253T 0.16 TCGA-VQ-A91Y-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.16 deleterious(0) probably_damaging(1) TCGA-VQ-A91Y-01 17 7577597 7577597 G C TP53 Missense_Mutation p.D228E 0.13 tolerated(0.95) benign(0.009) TCGA-VQ-A91Y-01 19 31768677 31768677 C T TSHZ3 Silent p.P674P 0.27 TCGA-VQ-A91Y-01 19 39694850 39694850 G A SYCN Silent p.S15S 0.20 TCGA-VQ-A91Y-01 19 47570357 47570357 G A ZC3H4 Silent p.T1056T 0.23 TCGA-VQ-A91Y-01 19 48342851 48342851 G A CRX Missense_Mutation p.R176Q 0.14 tolerated(0.6) benign(0.006) TCGA-VQ-A91Y-01 19 49812654 49812654 C A SLC6A16 Missense_Mutation p.L297F 0.26 tolerated(0.1) possibly_damaging(0.617) TCGA-VQ-A91Y-01 19 51671572 51671572 G A CTD-3187F8.14 Intron 0.22 TCGA-VQ-A91Y-01 1 173908005 173908005 C T RC3H1 Missense_Mutation p.V1086I 0.18 tolerated_low_confidence(0.25) benign(0.098) TCGA-VQ-A91Y-01 1 207751261 207751261 G C CR1 Missense_Mutation p.R1550T 0.18 tolerated(0.35) benign(0.088) TCGA-VQ-A91Y-01 1 6202599 6202599 G A CHD5 Nonsense_Mutation p.Q704* 0.21 TCGA-VQ-A91Y-01 20 35060649 35060649 G A DLGAP4 Missense_Mutation p.G177S 0.25 tolerated(0.81) benign(0.003) TCGA-VQ-A91Y-01 21 39775557 39775557 C T ERG Missense_Mutation p.V162I 0.13 tolerated(0.59) benign(0.13) TCGA-VQ-A91Y-01 21 40250702 40250702 A T AF064858.6 RNA 0.11 TCGA-VQ-A91Y-01 22 19035842 19035842 G A DGCR2 Intron 0.16 TCGA-VQ-A91Y-01 22 25331457 25331457 C T TMEM211 Missense_Mutation p.R78Q 0.11 tolerated(1) benign(0.001) TCGA-VQ-A91Y-01 2 1499909 1499909 G A TPO Missense_Mutation p.E719K 0.22 tolerated(0.22) benign(0.005) TCGA-VQ-A91Y-01 2 229890495 229890495 G T PID1 Nonsense_Mutation p.C200* 0.24 TCGA-VQ-A91Y-01 3 183911507 183911507 G A ABCF3 3'UTR 0.19 TCGA-VQ-A91Y-01 3 186370413 186370413 C T FETUB Missense_Mutation p.P381L 0.19 deleterious(0.03) possibly_damaging(0.888) TCGA-VQ-A91Y-01 4 154525484 154525484 C A KIAA0922 Missense_Mutation p.P1107Q 0.08 tolerated(0.07) benign(0.115) TCGA-VQ-A91Y-01 4 26426000 26426000 A C RBPJ Missense_Mutation p.N191T 0.26 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91Y-01 5 127599173 127599173 G A FBN2 Silent p.N2712N 0.19 TCGA-VQ-A91Y-01 5 132736461 132736461 G A FSTL4 Silent p.T126T 0.14 TCGA-VQ-A91Y-01 5 140264038 140264038 G A PCDHA13 Missense_Mutation p.E729K 0.10 deleterious_low_confidence(0.04) benign(0.006) TCGA-VQ-A91Y-01 7 30693089 30693089 G A CRHR2 Missense_Mutation p.T435M 0.35 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-VQ-A91Y-01 7 31378580 31378580 C T NEUROD6 Silent p.A101A 0.15 TCGA-VQ-A91Y-01 7 48046764 48046764 C A SUN3 Nonsense_Mutation p.E164* 0.12 TCGA-VQ-A91Y-01 8 110466967 110466967 T C PKHD1L1 Missense_Mutation p.S2254P 0.15 deleterious(0.03) possibly_damaging(0.555) TCGA-VQ-A91Y-01 8 17612094 17612094 G A MTUS1 Missense_Mutation p.S408L 0.20 tolerated(0.93) benign(0.005) TCGA-VQ-A91Y-01 8 32617727 32617727 C T NRG1 Silent p.N362N 0.17 TCGA-VQ-A91Y-01 8 92307803 92307803 C T SLC26A7 Missense_Mutation p.R117W 0.20 deleterious(0) probably_damaging(1) TCGA-VQ-A91Y-01 8 96057794 96057794 G A NDUFAF6 Missense_Mutation p.A167T 0.20 tolerated(0.12) benign(0.039) TCGA-VQ-A91Y-01 X 103043431 103043431 A G PLP1 Missense_Mutation p.T230A 0.05 deleterious(0.02) possibly_damaging(0.834) TCGA-VQ-A91Z-01 10 115410226 115410226 C A NRAP Missense_Mutation p.A252S 0.53 tolerated(0.12) probably_damaging(0.997) TCGA-VQ-A91Z-01 10 123503226 123503226 C T ATE1 Missense_Mutation p.C509Y 0.56 deleterious(0) probably_damaging(0.981) TCGA-VQ-A91Z-01 10 134012420 134012420 C A DPYSL4 Silent p.V252V 0.64 TCGA-VQ-A91Z-01 10 55782704 55782704 G T PCDH15 Missense_Mutation p.T825N 0.13 tolerated(0.25) benign(0.036) TCGA-VQ-A91Z-01 10 58118694 58118694 C A ZWINT Missense_Mutation p.Q165H 0.17 deleterious(0) possibly_damaging(0.563) TCGA-VQ-A91Z-01 10 73563028 73563028 G A CDH23 Missense_Mutation p.E335K 0.31 tolerated(0.08) benign(0.021) TCGA-VQ-A91Z-01 10 82036244 82036244 C T MAT1A Missense_Mutation p.R219H 0.29 deleterious(0.02) benign(0.103) TCGA-VQ-A91Z-01 11 1094820 1094820 G C MUC2 Missense_Mutation p.V1970L 0.36 unknown(0) TCGA-VQ-A91Z-01 11 112103902 112103902 C T PTS Missense_Mutation p.P87L 0.29 tolerated(0.18) benign(0.035) TCGA-VQ-A91Z-01 11 121032918 121032918 G A TECTA Missense_Mutation p.C1704Y 0.45 deleterious(0) possibly_damaging(0.776) TCGA-VQ-A91Z-01 11 27520295 27520295 T C LIN7C Silent p.G165G 0.10 TCGA-VQ-A91Z-01 11 51412310 51412311 AA T OR4A5 Frame_Shift_Del p.F29Ifs*7 0.29 TCGA-VQ-A91Z-01 11 56143669 56143669 A G OR8U1 Silent p.S190S 0.41 TCGA-VQ-A91Z-01 11 71293415 71293415 A C KRTAP5-11 Nonstop_Mutation p.*157Gext*37 0.73 TCGA-VQ-A91Z-01 12 103700029 103700029 A C C12orf42 Silent p.S118S 0.88 TCGA-VQ-A91Z-01 12 126135312 126135312 G A TMEM132B Missense_Mutation p.R571H 0.79 deleterious(0.01) probably_damaging(0.996) TCGA-VQ-A91Z-01 12 69103053 69103053 G A NUP107 Silent p.A255A 0.33 TCGA-VQ-A91Z-01 12 81331470 81331470 G A LIN7A Missense_Mutation p.T11M 0.42 tolerated_low_confidence(0.06) possibly_damaging(0.791) TCGA-VQ-A91Z-01 12 95365149 95365149 A T NDUFA12 3'UTR 0.50 TCGA-VQ-A91Z-01 13 23929546 23929546 C T SACS Missense_Mutation p.G402E 0.69 probably_damaging(1) TCGA-VQ-A91Z-01 13 36767800 36767800 T G SOHLH2 Missense_Mutation p.S207R 0.53 deleterious(0) possibly_damaging(0.567) TCGA-VQ-A91Z-01 13 53422059 53422059 G T PCDH8 Silent p.T171T 0.67 TCGA-VQ-A91Z-01 14 38724545 38724545 G A CLEC14A Missense_Mutation p.A228V 0.26 tolerated(0.37) benign(0.007) TCGA-VQ-A91Z-01 14 52187078 52187078 G A FRMD6 Missense_Mutation p.D444N 0.34 tolerated(0.22) benign(0.121) TCGA-VQ-A91Z-01 14 69847281 69847281 G A ERH Missense_Mutation p.R97W 0.29 tolerated(0.06) possibly_damaging(0.818) TCGA-VQ-A91Z-01 14 72165844 72165844 G T SIPA1L1 Missense_Mutation p.G1174V 0.17 deleterious(0.04) probably_damaging(0.999) TCGA-VQ-A91Z-01 14 77327038 77327038 C T C14orf166B Silent p.N369N 0.41 TCGA-VQ-A91Z-01 15 25346766 25346766 A C SNORD116-27 RNA 0.81 TCGA-VQ-A91Z-01 15 40631079 40631079 C G C15orf52 Missense_Mutation p.W130S 0.83 deleterious(0.01) probably_damaging(1) TCGA-VQ-A91Z-01 15 45694636 45694636 G A SPATA5L1 Silent p.P3P 0.63 TCGA-VQ-A91Z-01 15 91455769 91455769 C T MAN2A2 Intron 0.81 TCGA-VQ-A91Z-01 16 1245932 1245932 G A CACNA1H Missense_Mutation p.M184I 0.27 tolerated(0.19) benign(0.338) TCGA-VQ-A91Z-01 16 19693604 19693604 G T C16orf62 Missense_Mutation p.D896Y 0.45 deleterious(0) possibly_damaging(0.904) TCGA-VQ-A91Z-01 16 21654436 21654436 C T IGSF6 Missense_Mutation p.E209K 0.35 deleterious(0) probably_damaging(0.998) TCGA-VQ-A91Z-01 16 3304235 3304235 C T MEFV Missense_Mutation p.R278Q 0.38 tolerated(0.52) benign(0.003) TCGA-VQ-A91Z-01 16 3647843 3647843 G C SLX4 Missense_Mutation p.L441V 0.29 tolerated(0.05) probably_damaging(0.951) TCGA-VQ-A91Z-01 16 67188544 67188544 C T TRADD 3'UTR 0.50 TCGA-VQ-A91Z-01 16 72845608 72845608 C T ZFHX3 Silent p.T1244T 0.50 TCGA-VQ-A91Z-01 16 81232311 81232311 A T PKD1L2 Missense_Mutation p.F28Y 0.28 tolerated(1) benign(0.318) TCGA-VQ-A91Z-01 17 2276777 2276777 C T SGSM2 Silent p.L690L 0.38 TCGA-VQ-A91Z-01 17 4060438 4060438 G T CYB5D2 3'UTR 0.45 TCGA-VQ-A91Z-01 17 59937226 59937226 T C BRIP1 Missense_Mutation p.S46G 0.15 deleterious(0) probably_damaging(1) TCGA-VQ-A91Z-01 17 70117861 70117861 A C SOX9 Missense_Mutation p.N110T 0.33 deleterious(0) possibly_damaging(0.727) TCGA-VQ-A91Z-01 17 72345344 72345344 G A KIF19 Missense_Mutation p.V357I 0.39 tolerated(0.06) possibly_damaging(0.557) TCGA-VQ-A91Z-01 17 74922739 74922739 C T MGAT5B Silent p.Y417Y 0.22 TCGA-VQ-A91Z-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.78 tolerated(0.13) possibly_damaging(0.631) TCGA-VQ-A91Z-01 17 78328135 78328135 G A RNF213 Intron 0.33 TCGA-VQ-A91Z-01 18 67425015 67425015 A G DOK6 Silent p.P254P 0.30 TCGA-VQ-A91Z-01 18 74616336 74616336 G C ZNF236 Missense_Mutation p.G630A 0.38 deleterious(0.01) probably_damaging(0.976) TCGA-VQ-A91Z-01 19 10335471 10335471 C T S1PR2 Silent p.S37S 0.30 TCGA-VQ-A91Z-01 19 12792424 12792424 C T DHPS Missense_Mutation p.G53S 0.27 deleterious(0) probably_damaging(1) TCGA-VQ-A91Z-01 19 2717313 2717313 C A DIRAS1 Silent p.L164L 0.39 TCGA-VQ-A91Z-01 19 282755 282755 C T PPAP2C Silent p.L200L 0.36 TCGA-VQ-A91Z-01 19 36884129 36884129 A C ZFP82 Missense_Mutation p.C371W 0.26 deleterious(0) probably_damaging(1) TCGA-VQ-A91Z-01 19 37903698 37903698 A C ZNF569 Missense_Mutation p.L621R 0.33 deleterious(0) probably_damaging(1) TCGA-VQ-A91Z-01 19 38937382 38937382 C T RYR1 Silent p.L258L 0.32 TCGA-VQ-A91Z-01 19 40380255 40380255 C T FCGBP Missense_Mutation p.R3687Q 0.21 possibly_damaging(0.553) TCGA-VQ-A91Z-01 19 40996140 40996140 C T SPTBN4 Silent p.I160I 0.29 TCGA-VQ-A91Z-01 19 43259337 43259337 G A PSG8 Missense_Mutation p.P264L 0.29 tolerated(0.1) probably_damaging(0.997) TCGA-VQ-A91Z-01 19 44832827 44832827 C T ZNF112 Missense_Mutation p.E501K 0.41 tolerated(0.25) benign(0.017) TCGA-VQ-A91Z-01 19 4852272 4852272 C T PLIN3 Silent p.S130S 0.40 TCGA-VQ-A91Z-01 19 51363458 51363458 G A KLK3 3'UTR 0.31 TCGA-VQ-A91Z-01 19 52660493 52660493 C T ZNF836 Missense_Mutation p.R148H 0.35 tolerated(1) benign(0) TCGA-VQ-A91Z-01 19 53344293 53344293 T G ZNF468 Missense_Mutation p.K418N 0.43 deleterious(0) probably_damaging(0.945) TCGA-VQ-A91Z-01 19 57134183 57134183 C T ZNF71 3'UTR 0.33 TCGA-VQ-A91Z-01 19 57327528 57327528 T G PEG3 Missense_Mutation p.K761T 0.35 deleterious(0.04) benign(0.025) TCGA-VQ-A91Z-01 19 5997118 5997118 G A RFX2 Missense_Mutation p.R656C 0.57 deleterious(0) probably_damaging(0.998) TCGA-VQ-A91Z-01 1 102269800 102269800 G T OLFM3 Missense_Mutation p.D457E 0.56 tolerated_low_confidence(0.32) benign(0.007) TCGA-VQ-A91Z-01 1 12939394 12939394 C A PRAMEF4 Missense_Mutation p.D470Y 0.36 deleterious(0) probably_damaging(0.922) TCGA-VQ-A91Z-01 1 144994779 144994779 A G PDE4DIP 5'UTR 0.18 TCGA-VQ-A91Z-01 1 150526504 150526504 C G ADAMTSL4 Missense_Mutation p.P346R 0.44 deleterious(0.01) probably_damaging(0.965) TCGA-VQ-A91Z-01 1 151491553 151491553 C A CGN Missense_Mutation p.D186E 0.50 deleterious(0.01) possibly_damaging(0.542) TCGA-VQ-A91Z-01 1 152283872 152283872 T G FLG Missense_Mutation p.T1164P 0.24 possibly_damaging(0.507) TCGA-VQ-A91Z-01 1 152327633 152327633 T G FLG2 Missense_Mutation p.S877R 0.55 unknown(0) TCGA-VQ-A91Z-01 1 154241408 154241408 A T UBAP2L Missense_Mutation p.H1049L 0.32 deleterious(0) possibly_damaging(0.637) TCGA-VQ-A91Z-01 1 158061290 158061290 G T KIRREL Missense_Mutation p.C472F 0.27 deleterious(0) probably_damaging(1) TCGA-VQ-A91Z-01 1 158262407 158262407 C A CD1C Missense_Mutation p.S211Y 0.32 deleterious(0) probably_damaging(1) TCGA-VQ-A91Z-01 1 185191049 185191049 G A SWT1 Silent p.L730L 0.28 TCGA-VQ-A91Z-01 1 196876615 196876615 A C CFHR4 Silent p.P261P 0.56 TCGA-VQ-A91Z-01 1 209806041 209806041 C T LAMB3 Missense_Mutation p.A237T 0.51 tolerated(0.57) benign(0.032) TCGA-VQ-A91Z-01 1 229653852 229653852 C T ABCB10 3'UTR 0.40 TCGA-VQ-A91Z-01 1 248005131 248005131 C A OR11L1 Missense_Mutation p.W23L 0.37 tolerated(1) benign(0.154) TCGA-VQ-A91Z-01 1 27278008 27278008 C T C1orf172 Silent p.L288L 0.29 TCGA-VQ-A91Z-01 1 85331138 85331138 C T LPAR3 Silent p.P222P 0.30 TCGA-VQ-A91Z-01 20 18296594 18296603 TCAAACCTCA - ZNF133 Frame_Shift_Del p.N367Pfs*195 0.16 TCGA-VQ-A91Z-01 20 23065886 23065887 - C CD93 Frame_Shift_Ins p.A315Gfs*34 0.23 TCGA-VQ-A91Z-01 20 40735470 40735470 C T PTPRT Missense_Mutation p.V1116M 0.30 deleterious(0) possibly_damaging(0.894) TCGA-VQ-A91Z-01 20 56227621 56227621 G A PMEPA1 Missense_Mutation p.R118C 0.21 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91Z-01 20 57415666 57415666 C T RP4-806M20.3 5'Flank 0.14 TCGA-VQ-A91Z-01 20 62614437 62614437 G A PRPF6 Missense_Mutation p.A37T 0.15 deleterious(0) probably_damaging(1) TCGA-VQ-A91Z-01 21 47551934 47551934 G A COL6A2 Missense_Mutation p.R843Q 0.36 tolerated(0.05) probably_damaging(0.997) TCGA-VQ-A91Z-01 22 38343406 38343406 T C C22orf23 Silent p.Q77Q 0.31 TCGA-VQ-A91Z-01 22 41077333 41077333 C T MCHR1 Missense_Mutation p.R224W 0.28 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91Z-01 22 42523631 42523631 C A CYP2D6 Missense_Mutation p.V331F 0.29 deleterious(0) probably_damaging(0.993) TCGA-VQ-A91Z-01 22 44681489 44681489 G A KIAA1644 Nonsense_Mutation p.R140* 0.26 TCGA-VQ-A91Z-01 2 166246230 166246230 C A SCN2A Missense_Mutation p.P1972T 0.27 deleterious(0.01) probably_damaging(1) TCGA-VQ-A91Z-01 2 166536017 166536017 C A CSRNP3 Nonsense_Mutation p.C504* 0.52 TCGA-VQ-A91Z-01 2 167262435 167262435 A G SCN7A Silent p.V1568V 0.15 TCGA-VQ-A91Z-01 2 171573184 171573184 C T SP5 Missense_Mutation p.P156L 0.33 tolerated(0.29) benign(0.011) TCGA-VQ-A91Z-01 2 179257214 179257214 T A OSBPL6 Missense_Mutation p.V866E 0.24 tolerated(1) benign(0.002) TCGA-VQ-A91Z-01 2 180634441 180634441 C T ZNF385B Silent p.G14G 0.15 TCGA-VQ-A91Z-01 2 196689149 196689149 C T DNAH7 Missense_Mutation p.E3041K 0.64 deleterious(0) probably_damaging(0.994) TCGA-VQ-A91Z-01 2 215813851 215813851 T G ABCA12 Missense_Mutation p.N2292T 0.37 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91Z-01 2 51255362 51255362 G A NRXN1 Missense_Mutation p.S17L 0.88 tolerated(0.67) benign(0) TCGA-VQ-A91Z-01 2 63176061 63176061 G A EHBP1 Missense_Mutation p.G729S 0.41 tolerated_low_confidence(0.66) benign(0) TCGA-VQ-A91Z-01 2 96691749 96691749 G A GPAT2 Silent p.V389V 0.20 TCGA-VQ-A91Z-01 2 97532080 97532080 G A SEMA4C Silent p.Y66Y 0.25 TCGA-VQ-A91Z-01 3 113721368 113721368 T C KIAA1407 Missense_Mutation p.I666V 0.36 tolerated(0.62) benign(0.002) TCGA-VQ-A91Z-01 3 129150144 129150144 T A MBD4 3'UTR 0.35 TCGA-VQ-A91Z-01 3 1369270 1369270 G T CNTN6 Missense_Mutation p.A405S 0.48 deleterious(0) probably_damaging(0.994) TCGA-VQ-A91Z-01 3 140122667 140122667 G T CLSTN2 Splice_Site p.X143_splice 0.47 TCGA-VQ-A91Z-01 3 142455295 142455295 C A TRPC1 Missense_Mutation p.L83I 0.50 deleterious(0) probably_damaging(0.997) TCGA-VQ-A91Z-01 3 142561831 142561831 A T PCOLCE2 Missense_Mutation p.W170R 0.12 deleterious(0) probably_damaging(0.987) TCGA-VQ-A91Z-01 3 15275435 15275435 G T CAPN7 Missense_Mutation p.S414I 0.54 tolerated(0.1) benign(0.152) TCGA-VQ-A91Z-01 3 183521964 183521964 G T YEATS2 Missense_Mutation p.D1258Y 0.37 deleterious(0.04) probably_damaging(1) TCGA-VQ-A91Z-01 3 183883991 183883991 A G DVL3 Missense_Mutation p.I281V 0.34 deleterious(0.03) possibly_damaging(0.842) TCGA-VQ-A91Z-01 3 193002724 193002724 G A ATP13A5 Nonsense_Mutation p.R1069* 0.44 TCGA-VQ-A91Z-01 3 195538703 195538703 T G MUC4 5'UTR 0.18 TCGA-VQ-A91Z-01 3 47378094 47378094 C A KLHL18 Missense_Mutation p.T323K 0.57 tolerated(0.15) benign(0.005) TCGA-VQ-A91Z-01 3 47770577 47770577 A C SMARCC1 Missense_Mutation p.F195C 0.63 deleterious(0.04) benign(0.017) TCGA-VQ-A91Z-01 3 51743210 51743210 C T GRM2 Missense_Mutation p.R71C 0.47 deleterious(0) possibly_damaging(0.9) TCGA-VQ-A91Z-01 3 52562327 52562327 C T NT5DC2 Missense_Mutation p.G215S 0.28 tolerated(0.11) probably_damaging(0.979) TCGA-VQ-A91Z-01 4 103822354 103822354 T G SLC9B1 Missense_Mutation p.I490L 0.08 tolerated(1) benign(0.009) TCGA-VQ-A91Z-01 4 26484778 26484787 CTTTAGCAGA - CCKAR Frame_Shift_Del p.S249Kfs*54 0.17 TCGA-VQ-A91Z-01 4 70355231 70355231 C A UGT2B4 Missense_Mutation p.G310W 0.29 deleterious(0) probably_damaging(0.999) TCGA-VQ-A91Z-01 4 81504288 81504288 T C C4orf22 Missense_Mutation p.L95P 0.37 deleterious(0) probably_damaging(0.985) TCGA-VQ-A91Z-01 5 110428024 110428024 C T WDR36 Missense_Mutation p.S13L 0.67 tolerated_low_confidence(0.34) benign(0) TCGA-VQ-A91Z-01 5 112920142 112920142 C T YTHDC2 Missense_Mutation p.P1264L 0.63 deleterious(0.04) benign(0.138) TCGA-VQ-A91Z-01 5 129521286 129521286 T G CHSY3 Silent p.S817S 0.79 TCGA-VQ-A91Z-01 5 150922494 150922494 G C FAT2 Missense_Mutation p.P2732A 0.41 benign(0.085) TCGA-VQ-A91Z-01 5 168671743 168671744 CT - SLIT3 Frame_Shift_Del p.G103Rfs*17 0.16 TCGA-VQ-A91Z-01 5 180166887 180166887 G A OR2Y1 Missense_Mutation p.P58S 0.53 deleterious(0) probably_damaging(0.989) TCGA-VQ-A91Z-01 5 32789535 32789535 T C AC026703.1 Missense_Mutation p.F10L 0.21 benign(0.294) TCGA-VQ-A91Z-01 5 43651929 43651929 C T NNT Silent p.A602A 0.18 TCGA-VQ-A91Z-01 5 44310603 44310603 C A FGF10 Nonsense_Mutation p.G119* 0.10 TCGA-VQ-A91Z-01 5 90151699 90151699 T C GPR98 Silent p.S5912S 0.35 TCGA-VQ-A91Z-01 6 105606312 105606312 T - POPDC3 3'UTR 0.32 TCGA-VQ-A91Z-01 6 133777735 133777735 G A EYA4 Missense_Mutation p.E107K 0.26 deleterious(0.01) possibly_damaging(0.615) TCGA-VQ-A91Z-01 6 37617946 37617946 C G MDGA1 Silent p.T516T 0.20 TCGA-VQ-A91Z-01 6 43273758 43273758 T A CRIP3 Intron 0.48 TCGA-VQ-A91Z-01 6 49665572 49665572 C T CRISP2 Splice_Site p.X172_splice 0.26 TCGA-VQ-A91Z-01 6 90077914 90077914 T C RRAGD Missense_Mutation p.Y355C 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-VQ-A91Z-01 7 120876767 120876767 G A CPED1 Splice_Site p.X686_splice 0.17 TCGA-VQ-A91Z-01 7 150695648 150695648 G A NOS3 Silent p.P232P 0.38 TCGA-VQ-A91Z-01 7 154598736 154598736 G A DPP6 Missense_Mutation p.C527Y 0.24 deleterious(0) probably_damaging(1) TCGA-VQ-A91Z-01 7 2472855 2472855 C T CHST12 Missense_Mutation p.A194V 0.34 tolerated(0.41) benign(0.021) TCGA-VQ-A91Z-01 7 36571755 36571755 C T AOAH Missense_Mutation p.E475K 0.40 deleterious(0.02) possibly_damaging(0.861) TCGA-VQ-A91Z-01 7 37936690 37936690 A C NME8 Missense_Mutation p.N588T 0.29 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-VQ-A91Z-01 7 57187712 57187712 A T ZNF479 Nonsense_Mutation p.C470* 0.17 TCGA-VQ-A91Z-01 7 91690594 91690597 ACAG - AKAP9 Frame_Shift_Del p.T1876Sfs*2 0.37 TCGA-VQ-A91Z-01 7 91695798 91695798 C A AKAP9 Missense_Mutation p.L2090I 0.34 probably_damaging(0.998) TCGA-VQ-A91Z-01 7 92098681 92098681 C T ERVW-1 Missense_Mutation p.G339S 0.24 tolerated(0.18) benign(0.023) TCGA-VQ-A91Z-01 8 103663459 103663459 C T KLF10 Silent p.R367R 0.39 TCGA-VQ-A91Z-01 8 11188975 11188975 T C SLC35G5 Silent p.S120S 0.30 TCGA-VQ-A91Z-01 8 113249459 113249459 G A CSMD3 Silent p.N3529N 0.17 TCGA-VQ-A91Z-01 8 114449075 114449075 C G CSMD3 Silent p.G3G 0.38 TCGA-VQ-A91Z-01 8 116426421 116426421 C T TRPS1 Missense_Mutation p.D1239N 0.20 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-VQ-A91Z-01 8 116599528 116599528 A G TRPS1 Silent p.D800D 0.24 TCGA-VQ-A91Z-01 8 145151639 145151639 T G CYC1 Missense_Mutation p.F255C 0.16 deleterious(0) probably_damaging(0.945) TCGA-VQ-A91Z-01 8 22398280 22398280 C T PPP3CC Missense_Mutation p.H511Y 0.41 tolerated_low_confidence(0.16) benign(0.001) TCGA-VQ-A91Z-01 8 41543754 41543754 G A ANK1 Nonsense_Mutation p.R1477* 0.38 TCGA-VQ-A91Z-01 8 74888568 74888568 G A TMEM70 Missense_Mutation p.G18R 0.24 tolerated_low_confidence(0.21) benign(0.028) TCGA-VQ-A91Z-01 8 98289480 98289480 G A TSPYL5 Missense_Mutation p.T198M 0.20 tolerated(0.43) possibly_damaging(0.474) TCGA-VQ-A91Z-01 9 104297803 104297803 A G RNF20 Missense_Mutation p.E33G 0.22 deleterious(0.03) benign(0.403) TCGA-VQ-A91Z-01 9 123686063 123686063 C T TRAF1 Missense_Mutation p.E50K 0.21 tolerated(0.55) benign(0.003) TCGA-VQ-A91Z-01 9 134090721 134090721 G A NUP214 Silent p.S1905S 0.18 TCGA-VQ-A91Z-01 9 137690253 137690253 G A COL5A1 Splice_Site p.X967_splice 0.31 TCGA-VQ-A91Z-01 9 139748698 139748698 T A MAMDC4 Missense_Mutation p.C236S 0.37 deleterious(0) probably_damaging(0.998) TCGA-VQ-A91Z-01 9 140865975 140865975 G A CACNA1B Missense_Mutation p.V492M 0.23 deleterious(0) benign(0.265) TCGA-VQ-A91Z-01 9 33295207 33295207 C T NFX1 Missense_Mutation p.A272V 0.19 tolerated(0.42) benign(0.003) TCGA-VQ-A91Z-01 9 3879530 3879530 G T GLIS3 Missense_Mutation p.H732N 0.81 tolerated(0.2) benign(0.012) TCGA-VQ-A91Z-01 9 80943037 80943037 G A PSAT1 Missense_Mutation p.D314N 0.11 tolerated(0.07) benign(0.005) TCGA-VQ-A91Z-01 9 8340388 8340388 A G PTPRD Silent p.N1736N 0.32 TCGA-VQ-A91Z-01 X 134856875 134856875 C T CT45A1 3'UTR 0.05 TCGA-VQ-A91Z-01 X 135428944 135428944 G T GPR112 Nonsense_Mutation p.E1027* 0.37 TCGA-VQ-A91Z-01 X 150912265 150912265 G A CNGA2 Silent p.K430K 0.40 TCGA-VQ-A91Z-01 X 83599322 83599322 T G HDX Missense_Mutation p.E532D 0.64 tolerated(0.36) benign(0.001) TCGA-VQ-A91Z-01 X 86772919 86772919 A C KLHL4 Missense_Mutation p.E8A 0.78 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-VQ-A922-01 10 112270143 112270143 G A DUSP5 Missense_Mutation p.E372K 0.22 tolerated(0.33) benign(0.017) TCGA-VQ-A922-01 10 118030366 118030366 C T GFRA1 Missense_Mutation p.R101H 0.38 deleterious(0) possibly_damaging(0.679) TCGA-VQ-A922-01 10 123279539 123279539 C T FGFR2 Missense_Mutation p.G298D 0.10 deleterious(0.02) possibly_damaging(0.89) TCGA-VQ-A922-01 10 17032377 17032377 A C CUBN Missense_Mutation p.F1436V 0.15 deleterious(0) probably_damaging(0.964) TCGA-VQ-A922-01 10 34558613 34558613 G A PARD3 Missense_Mutation p.R1134W 0.09 deleterious(0.02) benign(0.007) TCGA-VQ-A922-01 10 37490216 37490216 T A ANKRD30A Missense_Mutation p.H888Q 0.06 tolerated(0.28) benign(0.03) TCGA-VQ-A922-01 10 79571684 79571684 G A DLG5 Silent p.S1440S 0.43 TCGA-VQ-A922-01 11 124179896 124179896 G C OR8D1 Missense_Mutation p.T256S 0.13 tolerated(0.09) possibly_damaging(0.747) TCGA-VQ-A922-01 11 124637892 124637892 A G MSANTD2 Missense_Mutation p.I235T 0.11 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-VQ-A922-01 11 130343454 130343454 T C ADAMTS15 Missense_Mutation p.V864A 0.11 deleterious(0) possibly_damaging(0.852) TCGA-VQ-A922-01 11 26681879 26681879 G A ANO3 Missense_Mutation p.R945Q 0.05 tolerated(0.27) probably_damaging(0.999) TCGA-VQ-A922-01 11 33667279 33667279 G A KIAA1549L Silent p.E1522E 0.37 TCGA-VQ-A922-01 11 44089250 44089250 G A ACCS Missense_Mutation p.G25S 0.07 tolerated(0.46) benign(0.002) TCGA-VQ-A922-01 11 56230849 56230849 A C OR5M9 Missense_Mutation p.F10C 0.11 deleterious(0) possibly_damaging(0.801) TCGA-VQ-A922-01 11 59132291 59132291 T G OR5AN1 Silent p.A120A 0.11 TCGA-VQ-A922-01 11 62397065 62397065 C T GANAB Missense_Mutation p.R632H 0.17 deleterious(0) probably_damaging(0.996) TCGA-VQ-A922-01 11 65771180 65771180 C T BANF1 Silent p.A69A 0.16 TCGA-VQ-A922-01 11 88027231 88027231 A C CTSC Silent p.T445T 0.33 TCGA-VQ-A922-01 12 122353776 122353776 G T PSMD9 Silent p.V190V 0.17 TCGA-VQ-A922-01 12 49999297 49999297 T A FAM186B 5'UTR 0.38 TCGA-VQ-A922-01 12 51589763 51589763 G A POU6F1 Missense_Mutation p.A80V 0.36 tolerated(0.61) possibly_damaging(0.739) TCGA-VQ-A922-01 12 51589764 51589764 C G POU6F1 Missense_Mutation p.A80P 0.36 tolerated(0.21) possibly_damaging(0.908) TCGA-VQ-A922-01 12 65141618 65141618 G T GNS Missense_Mutation p.N111K 0.09 deleterious(0) probably_damaging(1) TCGA-VQ-A922-01 12 69983438 69983438 G A CCT2 Missense_Mutation p.G207E 0.03 deleterious(0.01) probably_damaging(0.973) TCGA-VQ-A922-01 12 72278647 72278647 G A TBC1D15 Missense_Mutation p.D134N 0.08 deleterious(0) probably_damaging(1) TCGA-VQ-A922-01 12 78400512 78400512 C T NAV3 Silent p.R398R 0.42 TCGA-VQ-A922-01 12 81647107 81647107 G A ACSS3 Missense_Mutation p.V581M 0.31 deleterious(0) possibly_damaging(0.736) TCGA-VQ-A922-01 12 8242617 8242617 G T NECAP1 Nonsense_Mutation p.E61* 0.14 TCGA-VQ-A922-01 12 88482952 88482952 C T CEP290 Missense_Mutation p.D1296N 0.14 probably_damaging(0.999) TCGA-VQ-A922-01 13 108518147 108518147 C T FAM155A Silent p.E266E 0.17 TCGA-VQ-A922-01 13 114325830 114325830 G A GRK1 Missense_Mutation p.V282M 0.51 tolerated(1) benign(0.163) TCGA-VQ-A922-01 13 23907902 23907902 A C SACS Silent p.T3371T 0.16 TCGA-VQ-A922-01 13 76112055 76112055 A C COMMD6 5'Flank 0.18 TCGA-VQ-A922-01 13 84455470 84455470 G A SLITRK1 Missense_Mutation p.S58F 0.12 tolerated(0.76) benign(0.127) TCGA-VQ-A922-01 13 92345611 92345611 T G GPC5 Missense_Mutation p.F166V 0.22 deleterious(0) probably_damaging(1) TCGA-VQ-A922-01 13 94679997 94679997 A T GPC6 Silent p.P242P 0.05 TCGA-VQ-A922-01 14 106235713 106235713 C A IGHG3 Missense_Mutation p.G332V 0.09 deleterious(0) probably_damaging(0.999) TCGA-VQ-A922-01 14 19553758 19553758 G C POTEG Missense_Mutation p.K114N 0.04 tolerated(0.06) benign(0.131) TCGA-VQ-A922-01 14 23446061 23446061 C G AJUBA Intron 0.38 TCGA-VQ-A922-01 14 23794442 23794444 CTT - PABPN1 Intron 0.12 TCGA-VQ-A922-01 14 26917982 26917982 A C NOVA1 Missense_Mutation p.L236R 0.19 deleterious(0.01) unknown(0) TCGA-VQ-A922-01 14 42373394 42373394 C A LRFN5 3'UTR 0.29 TCGA-VQ-A922-01 14 50616769 50616769 C A SOS2 Nonsense_Mutation p.E781* 0.09 TCGA-VQ-A922-01 14 54896991 54896992 - A CNIH1 Frame_Shift_Ins p.Y132Lfs*56 0.46 TCGA-VQ-A922-01 14 70713313 70713313 G T ADAM21P1 RNA 0.05 TCGA-VQ-A922-01 14 70925281 70925281 C A ADAM21 Missense_Mutation p.F355L 0.15 tolerated(0.65) benign(0.021) TCGA-VQ-A922-01 14 72190578 72190578 T A SIPA1L1 Missense_Mutation p.S1496T 0.20 tolerated(0.33) probably_damaging(0.914) TCGA-VQ-A922-01 14 79111573 79111573 T C NRXN3 5'UTR 0.43 TCGA-VQ-A922-01 15 25219561 25219561 A C SNRPN 5'UTR 0.11 TCGA-VQ-A922-01 15 48063628 48063628 T G SEMA6D Silent p.T956T 0.20 TCGA-VQ-A922-01 15 68122553 68122553 C T SKOR1 Missense_Mutation p.S714L 0.10 deleterious_low_confidence(0) possibly_damaging(0.519) TCGA-VQ-A922-01 15 74883661 74883661 G A ARID3B Missense_Mutation p.A351T 0.09 tolerated(0.5) benign(0.019) TCGA-VQ-A922-01 15 96877501 96877501 C T NR2F2 Silent p.C213C 0.13 TCGA-VQ-A922-01 16 19680564 19680564 G A C16orf62 Silent p.S857S 0.10 TCGA-VQ-A922-01 16 2012442 2012442 G A RPS2 Intron 0.09 TCGA-VQ-A922-01 16 57499909 57499910 - A POLR2C Frame_Shift_Ins p.D61Efs*2 0.09 TCGA-VQ-A922-01 16 65005898 65005898 T G CDH11 Missense_Mutation p.K487T 0.16 tolerated(0.08) benign(0.016) TCGA-VQ-A922-01 17 10406097 10406097 G A MYH1 Silent p.T1023T 0.52 TCGA-VQ-A922-01 17 43003538 43003538 G C KIF18B Silent p.P823P 0.11 TCGA-VQ-A922-01 17 5307464 5307464 C G NUP88 Missense_Mutation p.D383H 0.09 deleterious(0.01) possibly_damaging(0.713) TCGA-VQ-A922-01 17 57351060 57351060 G A GDPD1 Missense_Mutation p.D291N 0.20 tolerated(0.21) possibly_damaging(0.449) TCGA-VQ-A922-01 17 61417678 61417678 G T TANC2 Nonsense_Mutation p.E524* 0.05 TCGA-VQ-A922-01 17 61895507 61895507 G A DDX42 Missense_Mutation p.G856S 0.46 tolerated_low_confidence(0.65) benign(0.003) TCGA-VQ-A922-01 17 62492698 62492698 G A POLG2 Missense_Mutation p.A130V 0.06 deleterious(0.02) benign(0.282) TCGA-VQ-A922-01 17 67210876 67210876 T A ABCA10 Silent p.I325I 0.10 TCGA-VQ-A922-01 17 71354258 71354258 T A SDK2 Missense_Mutation p.K1851N 0.08 tolerated(0.11) benign(0.297) TCGA-VQ-A922-01 17 73559880 73559880 A G LLGL2 Missense_Mutation p.R292G 0.11 tolerated(0.06) benign(0.099) TCGA-VQ-A922-01 17 73566146 73566146 G A LLGL2 Missense_Mutation p.E562K 0.10 tolerated(0.06) benign(0.035) TCGA-VQ-A922-01 17 73569626 73569626 G T LLGL2 Missense_Mutation p.E930D 0.04 deleterious(0.01) possibly_damaging(0.593) TCGA-VQ-A922-01 17 7578271 7578271 T C TP53 Missense_Mutation p.H193R 0.59 deleterious(0) probably_damaging(1) TCGA-VQ-A922-01 17 76831458 76831458 G A USP36 Missense_Mutation p.L127F 0.37 deleterious(0) probably_damaging(1) TCGA-VQ-A922-01 18 13113583 13113583 A C CEP192 Splice_Site p.X2350_splice 0.05 TCGA-VQ-A922-01 18 2924537 2924537 A T LPIN2 Missense_Mutation p.L649Q 0.05 deleterious(0) probably_damaging(0.999) TCGA-VQ-A922-01 18 70417571 70417571 A C NETO1 Missense_Mutation p.S423A 0.18 tolerated(0.1) benign(0.003) TCGA-VQ-A922-01 19 15164769 15164769 G A CASP14 Missense_Mutation p.E135K 0.12 tolerated(0.16) possibly_damaging(0.805) TCGA-VQ-A922-01 19 18961657 18961657 A T UPF1 Nonsense_Mutation p.K264* 0.30 TCGA-VQ-A922-01 19 2476306 2476306 C G GADD45B 5'UTR 0.11 TCGA-VQ-A922-01 19 40364065 40364065 G A FCGBP Silent p.N4859N 0.24 TCGA-VQ-A922-01 19 40480653 40480654 - C PSMC4 Frame_Shift_Ins p.R200Pfs*43 0.26 TCGA-VQ-A922-01 19 41224062 41224062 C T ITPKC Missense_Mutation p.A341V 0.07 tolerated(0.06) benign(0.272) TCGA-VQ-A922-01 19 44610618 44610618 A C ZNF224 Missense_Mutation p.Q102P 0.17 deleterious(0) probably_damaging(0.942) TCGA-VQ-A922-01 19 45811695 45811695 A C CKM Missense_Mutation p.F250C 0.11 deleterious(0) probably_damaging(0.999) TCGA-VQ-A922-01 19 45976262 45976262 G A FOSB Missense_Mutation p.A337T 0.11 tolerated(0.06) possibly_damaging(0.835) TCGA-VQ-A922-01 19 50753033 50753033 G A MYH14 Missense_Mutation p.D537N 0.62 deleterious(0) possibly_damaging(0.897) TCGA-VQ-A922-01 19 51140549 51140549 G C SYT3 Missense_Mutation p.I40M 0.05 tolerated(0.27) benign(0.003) TCGA-VQ-A922-01 19 55686666 55686666 C T SYT5 Silent p.A194A 0.18 TCGA-VQ-A922-01 19 57036658 57036658 T C ZNF471 Missense_Mutation p.C408R 0.10 deleterious(0) probably_damaging(0.99) TCGA-VQ-A922-01 19 57286814 57286814 T A ZIM2 Missense_Mutation p.T276S 0.09 tolerated(0.2) benign(0.111) TCGA-VQ-A922-01 1 102296256 102296256 C T OLFM3 Missense_Mutation p.R115Q 0.11 tolerated(0.44) benign(0.017) TCGA-VQ-A922-01 1 103343634 103343634 A G COL11A1 Missense_Mutation p.F1788L 0.31 unknown(0) TCGA-VQ-A922-01 1 113661892 113661892 T A LRIG2 Nonsense_Mutation p.Y906* 0.09 TCGA-VQ-A922-01 1 144821980 144821980 C T NBPF9 Missense_Mutation p.S307L 0.25 tolerated(1) probably_damaging(0.975) TCGA-VQ-A922-01 1 145561277 145561277 A G ANKRD35 Missense_Mutation p.E322G 0.23 deleterious(0) possibly_damaging(0.727) TCGA-VQ-A922-01 1 152280145 152280145 C G FLG Missense_Mutation p.G2406A 0.23 possibly_damaging(0.576) TCGA-VQ-A922-01 1 152282430 152282430 C T FLG Silent p.G1644G 0.09 TCGA-VQ-A922-01 1 158259776 158259776 T C CD1C 5'UTR 0.23 TCGA-VQ-A922-01 1 158324361 158324361 T C CD1E Missense_Mutation p.F85L 0.22 tolerated(0.12) benign(0.048) TCGA-VQ-A922-01 1 159170688 159170688 C T CADM3 Silent p.D425D 0.15 TCGA-VQ-A922-01 1 159284181 159284181 T A OR10J3 Missense_Mutation p.H90L 0.08 tolerated(0.57) benign(0.019) TCGA-VQ-A922-01 1 166927046 166927046 C T ILDR2 Silent p.L113L 0.27 TCGA-VQ-A922-01 1 172501623 172501623 T A SUCO 5'Flank 0.12 TCGA-VQ-A922-01 1 186275517 186275517 T C PRG4 Silent p.A222A 0.11 TCGA-VQ-A922-01 1 202573728 202573728 G C SYT2 Missense_Mutation p.A67G 0.14 tolerated(0.06) benign(0.364) TCGA-VQ-A922-01 1 21048335 21048335 G A SH2D5 Missense_Mutation p.R408W 0.40 tolerated_low_confidence(0.16) benign(0.009) TCGA-VQ-A922-01 1 222828080 222828080 C T MIA3 Nonsense_Mutation p.Q1518* 0.12 TCGA-VQ-A922-01 1 248367078 248367078 G A OR2M3 Missense_Mutation p.A237T 0.62 deleterious(0.04) benign(0.167) TCGA-VQ-A922-01 1 248685218 248685218 A C OR2G6 Missense_Mutation p.T91P 0.12 deleterious(0) possibly_damaging(0.655) TCGA-VQ-A922-01 1 32279690 32279690 C G SPOCD1 Missense_Mutation p.E415D 0.55 tolerated(0.2) benign(0.221) TCGA-VQ-A922-01 1 32673552 32673552 G A IQCC Missense_Mutation p.E504K 0.05 tolerated_low_confidence(0.18) benign(0.042) TCGA-VQ-A922-01 1 33058821 33058821 G A ZBTB8A Missense_Mutation p.E97K 0.04 probably_damaging(1) TCGA-VQ-A922-01 1 50884861 50884861 C T DMRTA2 Missense_Mutation p.D369N 0.19 deleterious(0.03) possibly_damaging(0.539) TCGA-VQ-A922-01 1 68912530 68912530 G A RPE65 Silent p.L36L 0.35 TCGA-VQ-A922-01 1 70339247 70339247 A G LRRC7 Intron 0.19 TCGA-VQ-A922-01 1 75699739 75699739 A C SLC44A5 Missense_Mutation p.L262R 0.25 deleterious(0) probably_damaging(0.996) TCGA-VQ-A922-01 1 76349430 76349430 C A MSH4 Silent p.I677I 0.21 TCGA-VQ-A922-01 1 91989917 91989917 A G CDC7 Silent p.L550L 0.26 TCGA-VQ-A922-01 1 98187229 98187229 T C DPYD Splice_Site p.X108_splice 0.08 TCGA-VQ-A922-01 20 33578914 33578914 T G MYH7B Missense_Mutation p.F767V 0.18 possibly_damaging(0.846) TCGA-VQ-A922-01 20 45130699 45130699 G A ZNF334 Missense_Mutation p.H427Y 0.10 deleterious(0) probably_damaging(0.996) TCGA-VQ-A922-01 20 47587679 47587679 G C ARFGEF2 Missense_Mutation p.V405L 0.05 tolerated(0.51) benign(0.004) TCGA-VQ-A922-01 20 57429240 57429240 C A GNAS Missense_Mutation p.P307H 0.30 deleterious_low_confidence(0) unknown(0) TCGA-VQ-A922-01 21 28212233 28212233 A G ADAMTS1 Missense_Mutation p.Y605H 0.19 deleterious(0.01) probably_damaging(0.989) TCGA-VQ-A922-01 21 30304864 30304864 C T LTN1 Silent p.G1712G 0.40 TCGA-VQ-A922-01 21 42080518 42080518 C T DSCAM Missense_Mutation p.V75I 0.25 tolerated(0.17) probably_damaging(0.976) TCGA-VQ-A922-01 21 43862607 43862607 T A UBASH3A Missense_Mutation p.I511N 0.14 deleterious(0) probably_damaging(0.978) TCGA-VQ-A922-01 22 17445663 17445663 A C GAB4 Missense_Mutation p.L490R 0.07 deleterious(0) benign(0.018) TCGA-VQ-A922-01 22 19127200 19127200 C A DGCR14 Missense_Mutation p.A205S 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A922-01 22 24056400 24056400 C T KB-1572G7.2 RNA 0.17 TCGA-VQ-A922-01 22 31952938 31952938 A G SFI1 Silent p.Q185Q 0.36 TCGA-VQ-A922-01 22 42269987 42269987 C G SREBF2 Missense_Mutation p.I351M 0.08 tolerated(0.13) benign(0.443) TCGA-VQ-A922-01 2 113676180 113676180 C T IL37 Missense_Mutation p.R151C 0.08 tolerated(0.21) benign(0.028) TCGA-VQ-A922-01 2 121747245 121747245 C T GLI2 Missense_Mutation p.P1252L 0.17 deleterious_low_confidence(0.01) benign(0.036) TCGA-VQ-A922-01 2 125521616 125521616 C T CNTNAP5 Missense_Mutation p.H808Y 0.10 deleterious(0) possibly_damaging(0.809) TCGA-VQ-A922-01 2 203644365 203644365 T G ICA1L Missense_Mutation p.N447T 0.17 tolerated(0.56) benign(0.02) TCGA-VQ-A922-01 2 20647581 20647581 A G RHOB Missense_Mutation p.K119E 0.10 tolerated(0.11) benign(0.117) TCGA-VQ-A922-01 2 210560910 210560910 C G MAP2 Missense_Mutation p.A1339G 0.04 tolerated(0.11) probably_damaging(0.966) TCGA-VQ-A922-01 2 216214455 216214455 A T ATIC 3'UTR 0.65 TCGA-VQ-A922-01 2 28634930 28634930 G C FOSL2 Missense_Mutation p.R199P 0.07 tolerated(0.2) benign(0.409) TCGA-VQ-A922-01 2 31805723 31805723 A C SRD5A2 RNA 0.25 TCGA-VQ-A922-01 2 37586866 37586866 C T QPCT Silent p.L137L 0.07 TCGA-VQ-A922-01 2 44040427 44040427 G A ABCG5 Missense_Mutation p.T595I 0.09 tolerated(0.47) benign(0) TCGA-VQ-A922-01 2 54128579 54128579 T C PSME4 Missense_Mutation p.M1065V 0.09 tolerated(0.28) benign(0.002) TCGA-VQ-A922-01 2 71215727 71215727 G C TEX261 3'UTR 0.08 TCGA-VQ-A922-01 3 101520708 101520708 C T NXPE3 Silent p.L241L 0.04 TCGA-VQ-A922-01 3 10491305 10491305 G A ATP2B2 5'UTR 0.21 TCGA-VQ-A922-01 3 109046666 109046666 G A DPPA4 3'UTR 0.09 TCGA-VQ-A922-01 3 138724539 138724539 C T PRR23A Missense_Mutation p.R191Q 0.55 tolerated(0.29) benign(0.007) TCGA-VQ-A922-01 3 195041485 195041485 C T ACAP2 Missense_Mutation p.V268I 0.05 tolerated(0.18) benign(0.285) TCGA-VQ-A922-01 3 21478492 21478492 A G ZNF385D Missense_Mutation p.S215P 0.14 deleterious(0) probably_damaging(0.976) TCGA-VQ-A922-01 3 25654176 25654176 C T TOP2B Missense_Mutation p.D1201N 0.23 tolerated(0.08) benign(0.03) TCGA-VQ-A922-01 3 37323465 37323465 C A GOLGA4 Missense_Mutation p.S82Y 0.16 possibly_damaging(0.888) TCGA-VQ-A922-01 3 48207349 48207349 T G CDC25A Missense_Mutation p.Q355P 0.06 deleterious(0) possibly_damaging(0.898) TCGA-VQ-A922-01 4 115997561 115997561 T C NDST4 Missense_Mutation p.E211G 0.23 tolerated(0.34) benign(0.175) TCGA-VQ-A922-01 4 126242192 126242192 G A FAT4 Silent p.V1542V 0.18 TCGA-VQ-A922-01 4 128627846 128627846 C T INTU Missense_Mutation p.R665C 0.11 deleterious(0) possibly_damaging(0.88) TCGA-VQ-A922-01 4 155157516 155157516 T G DCHS2 Missense_Mutation p.N2308T 0.15 deleterious(0) probably_damaging(1) TCGA-VQ-A922-01 4 164246448 164246448 A G NPY1R 3'UTR 0.09 TCGA-VQ-A922-01 4 164534559 164534559 T G MARCH1 Intron 0.15 TCGA-VQ-A922-01 4 1824747 1824747 C T LETM1 Missense_Mutation p.E482K 0.07 deleterious(0.05) benign(0.38) TCGA-VQ-A922-01 4 183714053 183714053 C A TENM3 Silent p.T2076T 0.24 TCGA-VQ-A922-01 4 3447896 3447896 C T HGFAC Silent p.G410G 0.20 TCGA-VQ-A922-01 4 42964920 42964920 T C GRXCR1 Silent p.T132T 0.06 TCGA-VQ-A922-01 4 54231376 54231376 C T SCFD2 Missense_Mutation p.V245I 0.07 tolerated(1) benign(0.003) TCGA-VQ-A922-01 4 66467874 66467874 A C EPHA5 Missense_Mutation p.F132C 0.21 deleterious(0) probably_damaging(0.997) TCGA-VQ-A922-01 4 86921898 86921898 T C ARHGAP24 3'UTR 0.15 TCGA-VQ-A922-01 5 140256728 140256728 C T PCDHA12 Silent p.D557D 0.09 TCGA-VQ-A922-01 5 140256833 140256833 G A PCDHA12 Silent p.A592A 0.56 TCGA-VQ-A922-01 5 31538546 31538546 A T C5orf22 Missense_Mutation p.D186V 0.16 tolerated(0.09) benign(0.259) TCGA-VQ-A922-01 5 41149516 41149516 T G C6 Missense_Mutation p.K817T 0.25 tolerated(0.4) benign(0.026) TCGA-VQ-A922-01 5 5182377 5182377 G A ADAMTS16 Missense_Mutation p.G241E 0.09 tolerated(0.22) benign(0.006) TCGA-VQ-A922-01 5 82491595 82491595 C T XRCC4 Missense_Mutation p.L108F 0.12 deleterious(0) possibly_damaging(0.483) TCGA-VQ-A922-01 6 138539299 138539299 A C PBOV1 Missense_Mutation p.H78Q 0.50 tolerated_low_confidence(0.24) unknown(0) TCGA-VQ-A922-01 6 155148326 155148326 C A SCAF8 Missense_Mutation p.P698T 0.06 tolerated(0.7) probably_damaging(0.999) TCGA-VQ-A922-01 6 16290732 16290732 C T GMPR Missense_Mutation p.S246L 0.04 deleterious(0) probably_damaging(0.969) TCGA-VQ-A922-01 6 29796450 29796450 C T HLA-G Silent p.T158T 0.46 TCGA-VQ-A922-01 6 30865850 30865850 C G DDR1 Missense_Mutation p.S745R 0.13 deleterious(0.02) benign(0.315) TCGA-VQ-A922-01 6 31927161 31927161 G A SKIV2L Missense_Mutation p.G37E 0.56 tolerated(0.74) benign(0.075) TCGA-VQ-A922-01 6 31927169 31927169 G A SKIV2L Missense_Mutation p.E40K 0.58 tolerated(0.47) benign(0.013) TCGA-VQ-A922-01 6 32064320 32064320 C T TNXB Missense_Mutation p.R437H 0.62 probably_damaging(0.984) TCGA-VQ-A922-01 6 56365950 56365950 C T DST Silent p.E3985E 0.12 TCGA-VQ-A922-01 6 75865540 75865540 T G COL12A1 Missense_Mutation p.K1094T 0.17 possibly_damaging(0.683) TCGA-VQ-A922-01 7 105615371 105615371 A C CDHR3 Missense_Mutation p.K43T 0.05 tolerated(0.99) benign(0.004) TCGA-VQ-A922-01 7 123254603 123254603 A G ASB15 Missense_Mutation p.D16G 0.08 tolerated(0.06) benign(0.028) TCGA-VQ-A922-01 7 123516833 123516833 T A HYAL4 Missense_Mutation p.F357Y 0.47 tolerated(0.61) benign(0.036) TCGA-VQ-A922-01 7 128485202 128485202 T C FLNC Missense_Mutation p.I1228T 0.11 tolerated(0.07) possibly_damaging(0.791) TCGA-VQ-A922-01 7 150753999 150753999 C G CDK5 Missense_Mutation p.V64L 0.20 deleterious(0.03) possibly_damaging(0.884) TCGA-VQ-A922-01 7 18066561 18066561 T A PRPS1L1 Missense_Mutation p.K282M 0.20 deleterious(0.01) benign(0.121) TCGA-VQ-A922-01 7 38725244 38725244 T C FAM183B Missense_Mutation p.Y121C 0.22 deleterious(0) benign(0.206) TCGA-VQ-A922-01 7 65338449 65338449 A G VKORC1L1 Missense_Mutation p.I31V 0.36 tolerated(1) benign(0.01) TCGA-VQ-A922-01 7 87160767 87160767 A C ABCB1 Missense_Mutation p.L843R 0.12 deleterious(0) probably_damaging(0.938) TCGA-VQ-A922-01 7 93555662 93555662 T C GNG11 3'UTR 0.55 TCGA-VQ-A922-01 8 103274159 103274159 T A UBR5 Missense_Mutation p.E2609V 0.12 deleterious(0) probably_damaging(0.968) TCGA-VQ-A922-01 8 131859682 131859682 G T ADCY8 Nonsense_Mutation p.C830* 0.38 TCGA-VQ-A922-01 8 134060112 134060112 G A SLA Silent p.V145V 0.06 TCGA-VQ-A922-01 8 141460973 141460973 G C TRAPPC9 Missense_Mutation p.A265G 0.07 deleterious(0.01) probably_damaging(0.917) TCGA-VQ-A922-01 8 144550697 144550697 G A ZC3H3 Missense_Mutation p.R654C 0.42 deleterious(0) probably_damaging(0.939) TCGA-VQ-A922-01 8 35583731 35583731 C T UNC5D Silent p.S455S 0.07 TCGA-VQ-A922-01 8 37732471 37732471 A T RAB11FIP1 Missense_Mutation p.L395Q 0.07 deleterious(0) probably_damaging(0.999) TCGA-VQ-A922-01 8 48740826 48740826 G C PRKDC Missense_Mutation p.S2826C 0.19 possibly_damaging(0.769) TCGA-VQ-A922-01 8 54764465 54764465 C T RGS20 Silent p.P2P 0.13 TCGA-VQ-A922-01 8 55533950 55533950 G A RP1 Missense_Mutation p.V142I 0.09 tolerated(0.49) benign(0.003) TCGA-VQ-A922-01 8 56015034 56015034 C T XKR4 5'UTR 0.10 TCGA-VQ-A922-01 8 67356848 67356848 C T ADHFE1 Missense_Mutation p.A73V 0.04 tolerated(0.08) benign(0.081) TCGA-VQ-A922-01 8 93088293 93088293 G A RUNX1T1 Intron 0.15 TCGA-VQ-A922-01 8 98290038 98290038 C T TSPYL5 Missense_Mutation p.R12H 0.23 tolerated(0.33) unknown(0) TCGA-VQ-A922-01 9 8636729 8636729 T G PTPRD Missense_Mutation p.K60N 0.21 tolerated(0.2) probably_damaging(0.99) TCGA-VQ-A922-01 9 90589310 90589310 C A CDK20 Missense_Mutation p.V18F 0.37 deleterious(0) probably_damaging(0.993) TCGA-VQ-A922-01 9 94172948 94172948 G T NFIL3 Missense_Mutation p.D23E 0.08 tolerated(0.33) benign(0.015) TCGA-VQ-A922-01 X 105011697 105011697 A C IL1RAPL2 3'UTR 0.25 TCGA-VQ-A922-01 X 109919325 109919325 T A CHRDL1 3'UTR 0.27 TCGA-VQ-A922-01 X 135432417 135432417 T C GPR112 Silent p.T2184T 0.18 TCGA-VQ-A923-01 10 102896610 102896610 G A TLX1 Silent p.P311P 0.14 TCGA-VQ-A923-01 10 103899478 103899478 G A PPRC1 Missense_Mutation p.V405I 0.22 tolerated_low_confidence(0.18) benign(0.001) TCGA-VQ-A923-01 10 16981005 16981005 A G CUBN Missense_Mutation p.M1897T 0.33 deleterious(0) possibly_damaging(0.742) TCGA-VQ-A923-01 10 30915090 30915090 G A LYZL2 Missense_Mutation p.A127V 0.33 tolerated(0.31) benign(0.033) TCGA-VQ-A923-01 10 4889846 4889846 G A AKR1E2 3'UTR 0.27 TCGA-VQ-A923-01 11 44129733 44129733 C T EXT2 Silent p.I190I 0.24 TCGA-VQ-A923-01 11 68703742 68703742 C T IGHMBP2 Silent p.N598N 0.31 TCGA-VQ-A923-01 11 85975230 85975230 A T EED Missense_Mutation p.L217F 0.30 deleterious(0.01) probably_damaging(0.997) TCGA-VQ-A923-01 12 101871340 101871340 G A SPIC Missense_Mutation p.C3Y 0.43 tolerated(0.13) possibly_damaging(0.55) TCGA-VQ-A923-01 12 115118912 115118912 C T TBX3 Silent p.L143L 0.14 TCGA-VQ-A923-01 12 4409060 4409060 C T CCND2 Missense_Mutation p.A252V 0.46 tolerated(0.21) benign(0.003) TCGA-VQ-A923-01 12 53185178 53185178 G A KRT3 Silent p.A449A 0.06 TCGA-VQ-A923-01 12 53233702 53233702 G A KRT78 Nonsense_Mutation p.Q372* 0.43 TCGA-VQ-A923-01 12 53686592 53686592 A G ESPL1 Missense_Mutation p.Y2000C 0.32 deleterious(0) probably_damaging(0.998) TCGA-VQ-A923-01 12 54903701 54903701 C T NCKAP1L Missense_Mutation p.R223C 0.41 deleterious(0) probably_damaging(1) TCGA-VQ-A923-01 12 88514898 88514898 G A CEP290 Missense_Mutation p.T412M 0.33 benign(0.005) TCGA-VQ-A923-01 13 39438512 39438512 G A FREM2 Silent p.L2584L 0.26 TCGA-VQ-A923-01 14 102717154 102717154 G T MOK Silent p.I195I 0.11 TCGA-VQ-A923-01 14 61923989 61923989 C T PRKCH Silent p.I352I 0.34 TCGA-VQ-A923-01 14 65266547 65266547 G A SPTB Missense_Mutation p.R328C 0.34 deleterious(0) probably_damaging(0.988) TCGA-VQ-A923-01 14 75415213 75415213 C T PGF Missense_Mutation p.C130Y 0.23 deleterious(0) probably_damaging(1) TCGA-VQ-A923-01 15 25351683 25351684 - A SNORD116-29 RNA 0.18 TCGA-VQ-A923-01 15 44865817 44865817 T A SPG11 Nonsense_Mutation p.K2045* 0.17 TCGA-VQ-A923-01 15 65489348 65489348 G A CILP Silent p.L1092L 0.34 TCGA-VQ-A923-01 15 71276490 71276490 C T LRRC49 Nonsense_Mutation p.R360* 0.24 TCGA-VQ-A923-01 15 75981206 75981206 G T CSPG4 Silent p.R734R 0.12 TCGA-VQ-A923-01 15 84245359 84245359 C T SH3GL3 Missense_Mutation p.R164C 0.19 deleterious(0) probably_damaging(0.999) TCGA-VQ-A923-01 16 4163773 4163773 G A ADCY9 Silent p.S557S 0.19 TCGA-VQ-A923-01 16 4935067 4935090 CCACAAGCTCCAGGCGGAGGTTCG - PPL In_Frame_Del p.A1189_V1196del 0.15 TCGA-VQ-A923-01 16 50707934 50707934 C T SNX20 Missense_Mutation p.V112I 0.32 tolerated(0.35) benign(0.032) TCGA-VQ-A923-01 16 57794206 57794206 C G KIFC3 Missense_Mutation p.Q785H 0.14 tolerated(0.11) probably_damaging(0.96) TCGA-VQ-A923-01 16 58633239 58633239 C A CNOT1 Translation_Start_Site p.M1? 0.27 deleterious(0.01) probably_damaging(0.987) TCGA-VQ-A923-01 16 66785210 66785210 G C DYNC1LI2 Silent p.S49S 0.12 TCGA-VQ-A923-01 16 67428919 67428919 G A ZDHHC1 Missense_Mutation p.R406W 0.45 tolerated_low_confidence(0.06) benign(0) TCGA-VQ-A923-01 16 84270705 84270705 G A KCNG4 Silent p.A129A 0.43 TCGA-VQ-A923-01 17 15519112 15519112 C A RP11-385D13.1 Missense_Mutation p.D483Y 0.09 deleterious_low_confidence(0) possibly_damaging(0.873) TCGA-VQ-A923-01 17 19575079 19575080 - T ALDH3A2 Frame_Shift_Ins p.S420Ffs*17 0.14 TCGA-VQ-A923-01 17 56060413 56060413 T A VEZF1 Silent p.R125R 0.07 TCGA-VQ-A923-01 17 56060414 56060414 C A VEZF1 Missense_Mutation p.R125L 0.09 tolerated(0.4) benign(0.392) TCGA-VQ-A923-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.57 tolerated(0.11) benign(0.308) TCGA-VQ-A923-01 18 19996625 19996625 G A CTAGE1 Missense_Mutation p.L384F 0.10 deleterious(0) probably_damaging(0.956) TCGA-VQ-A923-01 18 30846889 30846889 G T CCDC178 Missense_Mutation p.T467N 0.21 deleterious(0.01) benign(0.152) TCGA-VQ-A923-01 18 47101947 47101947 A G LIPG Silent p.S260S 0.33 TCGA-VQ-A923-01 18 47803071 47803071 G A MBD1 Nonsense_Mutation p.Q146* 0.20 TCGA-VQ-A923-01 18 5445196 5445196 C A EPB41L3 Missense_Mutation p.L143F 0.43 deleterious(0) probably_damaging(0.999) TCGA-VQ-A923-01 18 76755309 76755309 G A SALL3 Silent p.P1106P 0.30 TCGA-VQ-A923-01 19 18976389 18976389 C A UPF1 Silent p.G1013G 0.14 TCGA-VQ-A923-01 19 35449594 35449594 T C ZNF792 Missense_Mutation p.T389A 0.12 deleterious(0) possibly_damaging(0.905) TCGA-VQ-A923-01 19 38976685 38976685 G T RYR1 Missense_Mutation p.R1797L 0.18 benign(0.044) TCGA-VQ-A923-01 19 41009803 41009803 G A SPTBN4 Missense_Mutation p.D477N 0.10 deleterious(0) possibly_damaging(0.459) TCGA-VQ-A923-01 19 43519429 43519429 G T PSG11 Missense_Mutation p.P268Q 0.14 deleterious(0.01) possibly_damaging(0.514) TCGA-VQ-A923-01 19 45858935 45858935 G A ERCC2 Missense_Mutation p.R511W 0.08 deleterious(0) probably_damaging(0.992) TCGA-VQ-A923-01 19 48543887 48543887 C A CABP5 Missense_Mutation p.E71D 0.09 tolerated(0.26) benign(0.211) TCGA-VQ-A923-01 19 48846017 48846017 G A TMEM143 Silent p.L249L 0.09 TCGA-VQ-A923-01 19 51200888 51200888 C T SHANK1 Missense_Mutation p.R632Q 0.53 benign(0.007) TCGA-VQ-A923-01 1 114354872 114354872 C T RSBN1 Missense_Mutation p.A55T 0.08 deleterious_low_confidence(0) possibly_damaging(0.682) TCGA-VQ-A923-01 1 12854369 12854369 C G PRAMEF1 Nonsense_Mutation p.S198* 0.13 TCGA-VQ-A923-01 1 152084537 152084537 C T TCHH Missense_Mutation p.E386K 0.10 unknown(0) TCGA-VQ-A923-01 1 155013956 155013956 G A DCST1 Silent p.T205T 0.35 TCGA-VQ-A923-01 1 159683684 159683684 G A CRP Silent p.F102F 0.12 TCGA-VQ-A923-01 1 160171148 160171148 C T CASQ1 Silent p.D391D 0.23 TCGA-VQ-A923-01 1 20827806 20827806 C G MUL1 Missense_Mutation p.D146H 0.12 tolerated(0.06) possibly_damaging(0.872) TCGA-VQ-A923-01 1 230338912 230338912 G A GALNT2 Missense_Mutation p.E84K 0.38 tolerated(1) benign(0) TCGA-VQ-A923-01 1 236145008 236145008 G A NID1 Nonsense_Mutation p.R1044* 0.10 TCGA-VQ-A923-01 1 236721776 236721776 C T HEATR1 Silent p.K1655K 0.08 TCGA-VQ-A923-01 1 27058072 27058072 C T ARID1A Nonsense_Mutation p.Q594* 0.45 TCGA-VQ-A923-01 1 67336987 67336987 G A WDR78 Intron 0.43 TCGA-VQ-A923-01 1 94574146 94574146 C T ABCA4 Silent p.P143P 0.41 TCGA-VQ-A923-01 20 23860119 23860119 G A CST5 Silent p.Y65Y 0.10 TCGA-VQ-A923-01 20 34091507 34091509 CCT - CEP250 In_Frame_Del p.L1773del 0.13 TCGA-VQ-A923-01 20 42328453 42328453 C T MYBL2 Silent p.N240N 0.33 TCGA-VQ-A923-01 20 55033471 55033471 C T CASS4 Missense_Mutation p.R677W 0.43 deleterious(0) probably_damaging(1) TCGA-VQ-A923-01 20 58587605 58587605 G A CDH26 Silent p.L773L 0.31 TCGA-VQ-A923-01 21 15748002 15748002 C A HSPA13 Missense_Mutation p.G240V 0.25 deleterious(0) probably_damaging(1) TCGA-VQ-A923-01 21 34399432 34399432 T G OLIG2 Missense_Mutation p.S88A 0.33 tolerated(0.34) benign(0.003) TCGA-VQ-A923-01 22 17073401 17073401 G A CCT8L2 Missense_Mutation p.R14W 0.22 tolerated(0.1) possibly_damaging(0.791) TCGA-VQ-A923-01 22 38474526 38474526 C - SLC16A8 Frame_Shift_Del p.D462Tfs*32 0.20 TCGA-VQ-A923-01 22 38822839 38822839 C T KCNJ4 Silent p.P433P 0.14 TCGA-VQ-A923-01 22 50488634 50488634 G A TTLL8 Missense_Mutation p.R68W 0.55 deleterious(0) probably_damaging(1) TCGA-VQ-A923-01 2 11273718 11273718 G T C2orf50 Splice_Site p.X86_splice 0.24 TCGA-VQ-A923-01 2 179431614 179431614 T A TTN Silent p.G26415G 0.11 TCGA-VQ-A923-01 2 21001090 21001090 A T C2orf43 Missense_Mutation p.L45Q 0.30 tolerated(0.1) possibly_damaging(0.481) TCGA-VQ-A923-01 2 230668885 230668885 C T TRIP12 Silent p.P828P 0.28 TCGA-VQ-A923-01 2 37496777 37496777 C T PRKD3 Silent p.Q586Q 0.25 TCGA-VQ-A923-01 2 46583924 46583924 G A EPAS1 Missense_Mutation p.R144H 0.14 deleterious(0) possibly_damaging(0.875) TCGA-VQ-A923-01 3 109046650 109046650 T C DPPA4 3'UTR 0.37 TCGA-VQ-A923-01 3 126218904 126218904 T C UROC1 Silent p.R473R 0.30 TCGA-VQ-A923-01 3 129247871 129247871 C A RHO Missense_Mutation p.L99M 0.06 tolerated(1) benign(0.029) TCGA-VQ-A923-01 3 49331987 49331987 G A USP4 Missense_Mutation p.T579M 0.15 tolerated(0.05) benign(0.041) TCGA-VQ-A923-01 3 62189032 62189032 C T PTPRG Silent p.F521F 0.19 TCGA-VQ-A923-01 4 25005703 25005703 G A LGI2 Silent p.D336D 0.28 TCGA-VQ-A923-01 4 25848999 25848999 T A SEL1L3 Missense_Mutation p.D217V 0.19 deleterious(0.03) probably_damaging(0.915) TCGA-VQ-A923-01 4 4864581 4864581 C T MSX1 Missense_Mutation p.S208L 0.21 deleterious(0) possibly_damaging(0.842) TCGA-VQ-A923-01 4 57368093 57368093 T C SRP72 3'UTR 0.40 TCGA-VQ-A923-01 4 8416084 8416084 C T ACOX3 Missense_Mutation p.E160K 0.32 deleterious(0) probably_damaging(0.999) TCGA-VQ-A923-01 4 85605215 85605215 C T WDFY3 Missense_Mutation p.V3203M 0.26 tolerated(0.07) possibly_damaging(0.505) TCGA-VQ-A923-01 4 947120 947120 T C TMEM175 Missense_Mutation p.F202S 0.12 deleterious(0) possibly_damaging(0.873) TCGA-VQ-A923-01 5 136969759 136969759 C T KLHL3 Missense_Mutation p.V473M 0.33 deleterious(0.01) possibly_damaging(0.858) TCGA-VQ-A923-01 5 140180867 140180867 G A PCDHA3 Missense_Mutation p.G29S 0.27 tolerated_low_confidence(0.07) possibly_damaging(0.526) TCGA-VQ-A923-01 5 178489032 178489032 C T ZNF354C 5'UTR 0.18 TCGA-VQ-A923-01 5 5461558 5461558 G T KIAA0947 Missense_Mutation p.C704F 0.17 tolerated(0.7) benign(0.001) TCGA-VQ-A923-01 5 5461576 5461576 T A KIAA0947 Nonsense_Mutation p.L710* 0.19 TCGA-VQ-A923-01 5 5461577 5461577 G T KIAA0947 Missense_Mutation p.L710F 0.19 tolerated(0.09) possibly_damaging(0.805) TCGA-VQ-A923-01 5 67569842 67569845 GTGA - PIK3R1 Splice_Site p.X168_splice 0.14 TCGA-VQ-A923-01 5 82875806 82875806 C T VCAN Silent p.C3296C 0.32 TCGA-VQ-A923-01 6 151054780 151054780 C T PLEKHG1 5'UTR 0.38 TCGA-VQ-A923-01 6 152650875 152650875 C T SYNE1 Missense_Mutation p.R4982H 0.08 benign(0.001) TCGA-VQ-A923-01 6 159687167 159687167 C T FNDC1 Missense_Mutation p.T1779M 0.18 deleterious(0) probably_damaging(0.996) TCGA-VQ-A923-01 6 39163673 39163673 C T KCNK5 Missense_Mutation p.A93T 0.24 deleterious(0) probably_damaging(0.996) TCGA-VQ-A923-01 6 75799868 75799868 A C COL12A1 Missense_Mutation p.F2967V 0.31 probably_damaging(0.996) TCGA-VQ-A923-01 6 79675473 79675473 T C PHIP Missense_Mutation p.N1109S 0.08 deleterious(0) possibly_damaging(0.6) TCGA-VQ-A923-01 6 99797266 99797266 G A FAXC 5'UTR 0.33 TCGA-VQ-A923-01 7 128490927 128490927 G A FLNC Silent p.T1823T 0.18 TCGA-VQ-A923-01 7 148801524 148801524 G A ZNF425 Missense_Mutation p.T480M 0.17 tolerated(0.09) possibly_damaging(0.608) TCGA-VQ-A923-01 7 28547357 28547357 T A CREB5 Splice_Site p.X97_splice 0.19 TCGA-VQ-A923-01 7 37955990 37955990 C T SFRP4 Silent p.T50T 0.11 TCGA-VQ-A923-01 7 86415644 86415653 GTGATAAGTC - GRM3 Frame_Shift_Del p.D180Afs*34 0.09 TCGA-VQ-A923-01 8 121290723 121290723 T C COL14A1 Silent p.G1129G 0.28 TCGA-VQ-A923-01 8 13357063 13357063 G T DLC1 Missense_Mutation p.A173E 0.13 tolerated_low_confidence(1) benign(0.031) TCGA-VQ-A923-01 8 37821646 37821646 C T ADRB3 3'UTR 0.14 TCGA-VQ-A923-01 8 53852808 53852808 C T NPBWR1 Missense_Mutation p.A114V 0.24 tolerated(0.05) benign(0.027) TCGA-VQ-A923-01 8 87241988 87241988 G A SLC7A13 Silent p.F173F 0.11 TCGA-VQ-A923-01 9 107267335 107267335 T A OR13F1 Silent p.A264A 0.11 TCGA-VQ-A923-01 9 125154600 125154600 C T PTGS1 Missense_Mutation p.A526V 0.13 deleterious(0) probably_damaging(0.98) TCGA-VQ-A923-01 9 138376657 138376657 C A PPP1R26 Missense_Mutation p.L101I 0.32 deleterious(0.02) benign(0.031) TCGA-VQ-A923-01 9 21187122 21187122 C A IFNA4 Nonsense_Mutation p.E137* 0.30 TCGA-VQ-A923-01 9 35853158 35853158 T A TMEM8B Silent p.A329A 0.26 TCGA-VQ-A923-01 9 73027914 73027914 G T KLF9 Missense_Mutation p.S122R 0.08 tolerated(0.26) benign(0) TCGA-VQ-A923-01 9 82339962 82339962 C A TLE4 Missense_Mutation p.S742Y 0.10 deleterious(0) probably_damaging(0.997) TCGA-VQ-A923-01 9 86258540 86258541 AA - IDNK Frame_Shift_Del p.E139Gfs*7 0.19 TCGA-VQ-A923-01 X 109764682 109764682 G A TDGF1P3 RNA 0.54 TCGA-VQ-A923-01 X 135432165 135432165 C A GPR112 Nonsense_Mutation p.Y2100* 0.23 TCGA-VQ-A923-01 X 48547062 48547062 G A WAS Silent p.P315P 0.79 TCGA-VQ-A923-01 X 51488152 51488152 C T GSPT2 Missense_Mutation p.S477F 0.54 deleterious(0.01) possibly_damaging(0.816) TCGA-VQ-A923-01 X 53254032 53254032 A T KDM5C Missense_Mutation p.C14S 0.64 deleterious(0) probably_damaging(0.997) TCGA-VQ-A924-01 10 100016564 100016564 G A LOXL4 Silent p.G467G 0.26 TCGA-VQ-A924-01 10 101439034 101439034 G T ENTPD7 Missense_Mutation p.G70W 0.27 deleterious(0.02) possibly_damaging(0.812) TCGA-VQ-A924-01 10 102587324 102587324 C - PAX2 Frame_Shift_Del p.R403Gfs*37 0.25 TCGA-VQ-A924-01 10 102762593 102762593 C - LZTS2 Frame_Shift_Del p.S102Afs*41 0.24 TCGA-VQ-A924-01 10 103384541 103384541 C T FBXW4 Missense_Mutation p.C266Y 0.12 tolerated(0.08) benign(0.012) TCGA-VQ-A924-01 10 104860824 104860825 - A NT5C2 Frame_Shift_Ins p.T173Yfs*2 0.23 TCGA-VQ-A924-01 10 105945833 105945833 T G WDR96 Silent p.R637R 0.30 TCGA-VQ-A924-01 10 108337001 108337001 A G SORCS1 Missense_Mutation p.I1192T 0.29 deleterious(0) possibly_damaging(0.559) TCGA-VQ-A924-01 10 108459130 108459130 C T SORCS1 Missense_Mutation p.D419N 0.23 tolerated(0.07) benign(0.147) TCGA-VQ-A924-01 10 108923974 108923974 C T SORCS1 Missense_Mutation p.R104H 0.29 tolerated_low_confidence(0.12) possibly_damaging(0.573) TCGA-VQ-A924-01 10 111629746 111629746 C T XPNPEP1 Missense_Mutation p.E580K 0.29 deleterious(0) probably_damaging(1) TCGA-VQ-A924-01 10 117856263 117856263 C T GFRA1 Silent p.A261A 0.17 TCGA-VQ-A924-01 10 122668325 122668325 G T WDR11 3'UTR 0.21 TCGA-VQ-A924-01 10 123970588 123970588 G A TACC2 Silent p.P2216P 0.21 TCGA-VQ-A924-01 10 124395677 124395677 G A DMBT1 Missense_Mutation p.R2111Q 0.57 tolerated(0.62) benign(0.019) TCGA-VQ-A924-01 10 127730729 127730729 G A ADAM12 Intron 0.31 TCGA-VQ-A924-01 10 129907560 129907560 G T MKI67 Silent p.T848T 0.23 TCGA-VQ-A924-01 10 13246329 13246329 C T MCM10 Silent p.S822S 0.30 TCGA-VQ-A924-01 10 134008411 134008411 C T DPYSL4 Missense_Mutation p.R126W 0.35 tolerated(1) benign(0) TCGA-VQ-A924-01 10 134898355 134898355 C T GPR123 5'Flank 0.23 TCGA-VQ-A924-01 10 15821053 15821053 G A FAM188A Nonsense_Mutation p.Q426* 0.16 TCGA-VQ-A924-01 10 17130265 17130265 A C CUBN Missense_Mutation p.D615E 0.18 deleterious(0.01) probably_damaging(0.92) TCGA-VQ-A924-01 10 17147511 17147511 C G CUBN Missense_Mutation p.C392S 0.28 deleterious(0) probably_damaging(0.998) TCGA-VQ-A924-01 10 22676872 22676872 G A SPAG6 Missense_Mutation p.V267M 0.25 deleterious(0) possibly_damaging(0.838) TCGA-VQ-A924-01 10 26993621 26993621 C A PDSS1 Missense_Mutation p.L60I 0.22 tolerated_low_confidence(0.07) benign(0.075) TCGA-VQ-A924-01 10 27459272 27459272 A - MASTL Frame_Shift_Del p.T464Lfs*3 0.14 TCGA-VQ-A924-01 10 27702951 27702951 G - PTCHD3 Frame_Shift_Del p.R77Gfs*43 0.29 TCGA-VQ-A924-01 10 28032332 28032332 C T MKX Missense_Mutation p.V5I 0.36 deleterious_low_confidence(0.04) benign(0.042) TCGA-VQ-A924-01 10 30615385 30615385 G A MTPAP Silent p.S320S 0.28 TCGA-VQ-A924-01 10 32740637 32740637 A - CCDC7 Frame_Shift_Del p.G25Dfs*11 0.22 TCGA-VQ-A924-01 10 38121237 38121237 C - ZNF248 Frame_Shift_Del p.G349Efs*75 0.21 TCGA-VQ-A924-01 10 43288423 43288423 T C BMS1 Missense_Mutation p.V307A 0.28 tolerated(0.05) benign(0.009) TCGA-VQ-A924-01 10 43292186 43292186 G A BMS1 Silent p.L498L 0.24 TCGA-VQ-A924-01 10 43617426 43617426 A T RET Missense_Mutation p.E921D 0.21 deleterious(0.01) possibly_damaging(0.9) TCGA-VQ-A924-01 10 43623837 43623837 C T RET 3'UTR 0.50 TCGA-VQ-A924-01 10 48438806 48438806 C T GDF10 5'UTR 0.50 TCGA-VQ-A924-01 10 49457089 49457089 T C FRMPD2 Missense_Mutation p.E95G 0.38 tolerated(0.34) benign(0.003) TCGA-VQ-A924-01 10 49791181 49791181 T C ARHGAP22 Silent p.L17L 0.16 TCGA-VQ-A924-01 10 50724842 50724842 T - ERCC6-PGBD3 Frame_Shift_Del p.M575* 0.24 TCGA-VQ-A924-01 10 50724878 50724878 T C ERCC6-PGBD3 Missense_Mutation p.T563A 0.20 tolerated_low_confidence(0.9) unknown(0) TCGA-VQ-A924-01 10 53457990 53457990 G T CSTF2T Silent p.T440T 0.28 TCGA-VQ-A924-01 10 5979268 5979268 T C FBXO18 3'UTR 0.35 TCGA-VQ-A924-01 10 68686168 68686168 G A LRRTM3 5'UTR 0.33 TCGA-VQ-A924-01 10 71018672 71018672 G A HKDC1 Missense_Mutation p.D725N 0.26 deleterious(0) probably_damaging(1) TCGA-VQ-A924-01 10 71716781 71716781 C A COL13A1 Missense_Mutation p.Q712K 0.23 tolerated(0.11) probably_damaging(0.976) TCGA-VQ-A924-01 10 73057706 73057706 G A UNC5B Missense_Mutation p.G844D 0.10 tolerated(1) benign(0.04) TCGA-VQ-A924-01 10 73550168 73550168 C T CDH23 Missense_Mutation p.T2021I 0.24 deleterious(0.01) benign(0.139) TCGA-VQ-A924-01 10 74916204 74916204 A - ECD Frame_Shift_Del p.F140Sfs*32 0.23 TCGA-VQ-A924-01 10 75258477 75258477 T C USP54 Silent p.R1655R 0.17 TCGA-VQ-A924-01 10 8007049 8007049 A - TAF3 Frame_Shift_Del p.K527Rfs*3 0.11 TCGA-VQ-A924-01 10 8051263 8051263 C T TAF3 Silent p.S846S 0.33 TCGA-VQ-A924-01 10 81053171 81053171 A G ZMIZ1 Missense_Mutation p.M331V 0.27 benign(0.021) TCGA-VQ-A924-01 10 81056307 81056307 C T ZMIZ1 Missense_Mutation p.P437L 0.36 benign(0.058) TCGA-VQ-A924-01 10 81923857 81923857 A T ANXA11 Missense_Mutation p.S301T 0.22 tolerated(0.86) probably_damaging(0.998) TCGA-VQ-A924-01 10 90438404 90438404 A G LIPF Missense_Mutation p.D398G 0.31 deleterious(0.03) benign(0.039) TCGA-VQ-A924-01 10 92680837 92680837 T C ANKRD1 5'UTR 0.25 TCGA-VQ-A924-01 10 93588077 93588077 C T TNKS2 Nonsense_Mutation p.R340* 0.19 TCGA-VQ-A924-01 10 94267920 94267920 C T IDE Missense_Mutation p.R368Q 0.33 deleterious(0.01) benign(0.418) TCGA-VQ-A924-01 10 95791342 95791342 C A PLCE1 Missense_Mutation p.P180H 0.26 deleterious_low_confidence(0) possibly_damaging(0.625) TCGA-VQ-A924-01 10 96053374 96053374 A G PLCE1 Silent p.S1715S 0.37 TCGA-VQ-A924-01 10 97096320 97096320 G A SORBS1 Silent p.G1199G 0.24 TCGA-VQ-A924-01 10 97392776 97392776 C T ALDH18A1 Missense_Mutation p.A250T 0.26 deleterious(0) possibly_damaging(0.771) TCGA-VQ-A924-01 10 99330077 99330077 G A UBTD1 Missense_Mutation p.V161M 0.33 deleterious(0.05) possibly_damaging(0.744) TCGA-VQ-A924-01 11 101786041 101786041 G A KIAA1377 Missense_Mutation p.R9Q 0.24 tolerated(0.3) benign(0.029) TCGA-VQ-A924-01 11 106849343 106849343 A G GUCY1A2 Splice_Site p.X163_splice 0.25 TCGA-VQ-A924-01 11 1093566 1093566 C T MUC2 Silent p.T1795T 0.22 TCGA-VQ-A924-01 11 110479715 110479715 T C ARHGAP20 Silent p.P256P 0.35 TCGA-VQ-A924-01 11 111431033 111431033 C T LAYN Silent p.N333N 0.23 TCGA-VQ-A924-01 11 114112977 114112977 C T ZBTB16 Silent p.G514G 0.29 TCGA-VQ-A924-01 11 115047097 115047097 A - CADM1 3'UTR 0.16 TCGA-VQ-A924-01 11 1157897 1157897 G - MUC5AC Frame_Shift_Del p.L324Cfs*137 0.28 TCGA-VQ-A924-01 11 117059884 117059884 G A SIDT2 Splice_Site p.X427_splice 0.22 TCGA-VQ-A924-01 11 117267909 117267909 G A CEP164 Silent p.R1127R 0.17 TCGA-VQ-A924-01 11 118344186 118344186 C - KMT2A Frame_Shift_Del p.P773Rfs*8 0.30 TCGA-VQ-A924-01 11 118382700 118382700 A G KMT2A Silent p.E3702E 0.26 TCGA-VQ-A924-01 11 118452096 118452096 A G ARCN1 Missense_Mutation p.T47A 0.27 deleterious(0) probably_damaging(1) TCGA-VQ-A924-01 11 118769800 118769800 G T BCL9L Missense_Mutation p.P1275H 0.22 possibly_damaging(0.85) TCGA-VQ-A924-01 11 119029042 119029042 G A ABCG4 Silent p.T389T 0.28 TCGA-VQ-A924-01 11 121177866 121177866 T C SC5D Missense_Mutation p.I182T 0.24 deleterious(0) possibly_damaging(0.697) TCGA-VQ-A924-01 11 121454211 121454211 G A SORL1 Missense_Mutation p.G1209R 0.24 deleterious(0.03) possibly_damaging(0.537) TCGA-VQ-A924-01 11 123993782 123993782 G A VWA5A Missense_Mutation p.M292I 0.23 deleterious(0) probably_damaging(0.999) TCGA-VQ-A924-01 11 124506917 124506918 - G SIAE Frame_Shift_Ins p.L501Pfs*23 0.12 TCGA-VQ-A924-01 11 126141345 126141345 G T FOXRED1 Missense_Mutation p.K33N 0.34 tolerated(0.21) benign(0.007) TCGA-VQ-A924-01 11 1269325 1269325 G A MUC5B Missense_Mutation p.A3739T 0.16 unknown(0) TCGA-VQ-A924-01 11 128638115 128638115 C - FLI1 Frame_Shift_Del p.P113Lfs*5 0.23 TCGA-VQ-A924-01 11 129740052 129740052 C T NFRKB Silent p.P981P 0.27 TCGA-VQ-A924-01 11 134119143 134119143 G A THYN1 Missense_Mutation p.A133V 0.15 tolerated(0.08) probably_damaging(0.983) TCGA-VQ-A924-01 11 134226202 134226202 G A GLB1L2 Missense_Mutation p.R189H 0.21 tolerated(0.48) benign(0.005) TCGA-VQ-A924-01 11 17099016 17099016 A G RPS13 Missense_Mutation p.L11P 0.18 deleterious(0.04) probably_damaging(0.949) TCGA-VQ-A924-01 11 18232102 18232102 A - RP11-113D6.10 3'UTR 0.29 TCGA-VQ-A924-01 11 18267516 18267516 C A SAA2 Silent p.R57R 0.13 TCGA-VQ-A924-01 11 1858573 1858573 G T SYT8 Missense_Mutation p.R373L 0.20 deleterious(0) benign(0) TCGA-VQ-A924-01 11 18754863 18754863 C T PTPN5 Silent p.T379T 0.20 TCGA-VQ-A924-01 11 18956284 18956284 G A MRGPRX1 Silent p.N16N 0.18 TCGA-VQ-A924-01 11 19170754 19170754 T G ZDHHC13 Missense_Mutation p.V132G 0.29 deleterious(0) probably_damaging(0.992) TCGA-VQ-A924-01 11 1950361 1950361 G T TNNT3 Nonsense_Mutation p.E32* 0.27 TCGA-VQ-A924-01 11 20622980 20622980 G A SLC6A5 Silent p.A103A 0.29 TCGA-VQ-A924-01 11 22747903 22747903 C T GAS2 Silent p.D111D 0.18 TCGA-VQ-A924-01 11 30255115 30255115 A G FSHB Splice_Site p.X54_splice 0.26 TCGA-VQ-A924-01 11 30255210 30255210 G A FSHB Missense_Mutation p.A85T 0.28 tolerated(0.06) benign(0.046) TCGA-VQ-A924-01 11 32637639 32637639 A G CCDC73 Missense_Mutation p.S408P 0.29 tolerated(0.11) benign(0.103) TCGA-VQ-A924-01 11 33124703 33124703 T - CSTF3 Frame_Shift_Del p.M205* 0.23 TCGA-VQ-A924-01 11 33308174 33308174 C T HIPK3 Nonsense_Mutation p.R72* 0.19 TCGA-VQ-A924-01 11 36250780 36250780 C - LDLRAD3 Frame_Shift_Del p.Y293Tfs*20 0.20 TCGA-VQ-A924-01 11 36511405 36511405 T C TRAF6 Missense_Mutation p.T518A 0.34 tolerated_low_confidence(1) benign(0.05) TCGA-VQ-A924-01 11 380921 380921 G - B4GALNT4 Frame_Shift_Del p.G991Vfs*71 0.23 TCGA-VQ-A924-01 11 4112634 4112634 G A STIM1 Missense_Mutation p.G555D 0.36 deleterious_low_confidence(0) benign(0.185) TCGA-VQ-A924-01 11 43364131 43364131 C T API5 3'UTR 0.42 TCGA-VQ-A924-01 11 45891672 45891672 C T CRY2 Silent p.C442C 0.23 TCGA-VQ-A924-01 11 45955742 45955742 C T PHF21A Missense_Mutation p.R607Q 0.17 tolerated(0.25) benign(0.027) TCGA-VQ-A924-01 11 46333945 46333945 T C CREB3L1 Missense_Mutation p.Y275H 0.29 deleterious(0) probably_damaging(0.983) TCGA-VQ-A924-01 11 4661750 4661750 C T OR51D1 Missense_Mutation p.R244W 0.25 tolerated(0.06) benign(0.001) TCGA-VQ-A924-01 11 46726305 46726305 G T ZNF408 Missense_Mutation p.R352L 0.19 deleterious(0) possibly_damaging(0.474) TCGA-VQ-A924-01 11 4703202 4703202 A G OR51E2 Missense_Mutation p.V247A 0.23 deleterious(0.01) probably_damaging(0.997) TCGA-VQ-A924-01 11 47305826 47305826 A G MADD Missense_Mutation p.T654A 0.25 deleterious(0) probably_damaging(0.934) TCGA-VQ-A924-01 11 486980 486980 C A PTDSS2 Silent p.P159P 0.12 TCGA-VQ-A924-01 11 5443543 5443543 C T OR51Q1 Missense_Mutation p.T38I 0.26 tolerated(0.58) benign(0.005) TCGA-VQ-A924-01 11 55339966 55339966 T G OR4C16 Nonsense_Mutation p.Y121* 0.21 TCGA-VQ-A924-01 11 56144005 56144006 - A OR8U1 Frame_Shift_Ins p.I304Nfs*5 0.18 TCGA-VQ-A924-01 11 57569509 57569509 A - CTNND1 Frame_Shift_Del p.K422Rfs*26 0.23 TCGA-VQ-A924-01 11 57958386 57958386 T C OR9Q2 Missense_Mutation p.W142R 0.27 tolerated(0.25) benign(0.005) TCGA-VQ-A924-01 11 59609971 59609971 C T GIF Silent p.P152P 0.28 TCGA-VQ-A924-01 11 62159773 62159773 A G ASRGL1 3'UTR 0.34 TCGA-VQ-A924-01 11 62416613 62416613 G T INTS5 Silent p.L313L 0.26 TCGA-VQ-A924-01 11 62445471 62445471 C T UBXN1 Missense_Mutation p.R137Q 0.10 deleterious(0.04) benign(0.26) TCGA-VQ-A924-01 11 62554059 62554059 G - TAF6L Frame_Shift_Del p.C389Afs*47 0.28 TCGA-VQ-A924-01 11 62559918 62559918 G - NXF1 3'UTR 0.24 TCGA-VQ-A924-01 11 63279290 63279290 C T LGALS12 Silent p.L232L 0.05 TCGA-VQ-A924-01 11 63670095 63670095 C A MARK2 Silent p.T419T 0.17 TCGA-VQ-A924-01 11 63884730 63884730 T - FLRT1 Frame_Shift_Del p.C332Vfs*12 0.28 TCGA-VQ-A924-01 11 64397903 64397903 C T NRXN2 Missense_Mutation p.S1243N 0.23 tolerated(1) benign(0.25) TCGA-VQ-A924-01 11 64572637 64572637 G T MEN1 Missense_Mutation p.P412T 0.29 deleterious(0) probably_damaging(0.97) TCGA-VQ-A924-01 11 64606240 64606240 G A CDC42BPG Silent p.F337F 0.28 TCGA-VQ-A924-01 11 65268482 65268482 T A MALAT1 RNA 0.27 TCGA-VQ-A924-01 11 65314283 65314283 C - LTBP3 Frame_Shift_Del p.G739Afs*7 0.34 TCGA-VQ-A924-01 11 65978630 65978630 C T PACS1 Missense_Mutation p.A187V 0.14 tolerated(0.16) benign(0.08) TCGA-VQ-A924-01 11 66468374 66468374 G A SPTBN2 Missense_Mutation p.R1066W 0.21 deleterious(0) probably_damaging(0.94) TCGA-VQ-A924-01 11 66555692 66555692 C A C11orf80 Missense_Mutation p.S195R 0.19 deleterious(0.01) possibly_damaging(0.883) TCGA-VQ-A924-01 11 66617516 66617516 C A PC Missense_Mutation p.E930D 0.31 tolerated(1) benign(0) TCGA-VQ-A924-01 11 67051731 67051731 C T ADRBK1 Missense_Mutation p.S514L 0.22 deleterious(0) probably_damaging(0.997) TCGA-VQ-A924-01 11 67203083 67203083 G - PTPRCAP 3'UTR 0.35 TCGA-VQ-A924-01 11 67265774 67265774 C T PITPNM1 Missense_Mutation p.D502N 0.23 tolerated(0.1) benign(0.115) TCGA-VQ-A924-01 11 67269544 67269544 G A PITPNM1 Silent p.I143I 0.09 TCGA-VQ-A924-01 11 6806368 6806368 C A OR2AG1 Missense_Mutation p.L34I 0.25 tolerated(0.87) possibly_damaging(0.652) TCGA-VQ-A924-01 11 68747516 68747516 C T MRGPRD Missense_Mutation p.V314M 0.24 tolerated(0.08) benign(0) TCGA-VQ-A924-01 11 70505993 70505993 G A SHANK2 Silent p.S668S 0.26 TCGA-VQ-A924-01 11 73022048 73022048 G T ARHGEF17 Missense_Mutation p.G789C 0.35 tolerated_low_confidence(0.22) possibly_damaging(0.65) TCGA-VQ-A924-01 11 73427309 73427309 G C RAB6A Missense_Mutation p.L130V 0.33 deleterious(0.01) benign(0.248) TCGA-VQ-A924-01 11 7982658 7982658 G T NLRP10 Silent p.S167S 0.24 TCGA-VQ-A924-01 11 82644988 82644989 - A C11orf82 Frame_Shift_Ins p.I872Nfs*25 0.18 TCGA-VQ-A924-01 11 83770392 83770392 G A DLG2 Silent p.T295T 0.22 TCGA-VQ-A924-01 11 850310 850310 G A TSPAN4 Silent p.A2A 0.37 TCGA-VQ-A924-01 11 865968 865968 G A TSPAN4 Silent p.V205V 0.06 TCGA-VQ-A924-01 11 89774484 89774484 G T TRIM49C Missense_Mutation p.E375D 0.19 tolerated(0.07) benign(0.039) TCGA-VQ-A924-01 11 9167317 9167317 C - DENND5A Frame_Shift_Del p.G968Afs*29 0.26 TCGA-VQ-A924-01 11 94528239 94528239 T C AMOTL1 Missense_Mutation p.F38L 0.24 tolerated_low_confidence(1) benign(0) TCGA-VQ-A924-01 12 1005379 1005379 C T WNK1 Missense_Mutation p.P1909L 0.29 deleterious(0.04) possibly_damaging(0.666) TCGA-VQ-A924-01 12 10124250 10124251 - A CLEC12A Frame_Shift_Ins p.I31Nfs*63 0.15 TCGA-VQ-A924-01 12 102542315 102542315 C A PARPBP Intron 0.42 TCGA-VQ-A924-01 12 104131519 104131519 G - STAB2 Frame_Shift_Del p.G1888Afs*33 0.18 TCGA-VQ-A924-01 12 104192395 104192395 G T NT5DC3 Silent p.P195P 0.31 TCGA-VQ-A924-01 12 10561592 10561592 C G KLRC4 Missense_Mutation p.E69Q 0.32 tolerated(0.13) probably_damaging(0.991) TCGA-VQ-A924-01 12 108029161 108029161 C T BTBD11 Missense_Mutation p.R911C 0.17 deleterious(0) probably_damaging(0.998) TCGA-VQ-A924-01 12 108169097 108169097 C - ASCL4 Frame_Shift_Del p.L37Sfs*53 0.26 TCGA-VQ-A924-01 12 109288060 109288060 G A DAO Missense_Mutation p.V177M 0.24 deleterious(0.02) possibly_damaging(0.747) TCGA-VQ-A924-01 12 110019240 110019240 C - MVK Frame_Shift_Del p.A141Rfs*18 0.23 TCGA-VQ-A924-01 12 112614406 112614407 - T HECTD4 Frame_Shift_Ins p.Q3676Tfs*5 0.13 TCGA-VQ-A924-01 12 112650363 112650363 G A HECTD4 Silent p.C2373C 0.27 TCGA-VQ-A924-01 12 11545847 11545847 G T PRB2 Missense_Mutation p.Q389K 0.19 tolerated_low_confidence(0.17) unknown(0) TCGA-VQ-A924-01 12 11546905 11546905 G A PRB2 Missense_Mutation p.P36L 0.21 tolerated_low_confidence(0.09) unknown(0) TCGA-VQ-A924-01 12 117725944 117725944 G A NOS1 Silent p.R354R 0.33 TCGA-VQ-A924-01 12 118598000 118598000 A G TAOK3 Missense_Mutation p.L768S 0.10 deleterious(0) probably_damaging(0.999) TCGA-VQ-A924-01 12 118829054 118829054 G A SUDS3 Missense_Mutation p.E162K 0.23 deleterious(0.01) possibly_damaging(0.596) TCGA-VQ-A924-01 12 120152115 120152115 C T CIT Missense_Mutation p.R1398H 0.33 deleterious(0) possibly_damaging(0.814) TCGA-VQ-A924-01 12 120595680 120595680 G - GCN1L1 Frame_Shift_Del p.N1021Tfs*24 0.13 TCGA-VQ-A924-01 12 122285044 122285044 G A HPD Nonsense_Mutation p.R225* 0.24 TCGA-VQ-A924-01 12 123187816 123187816 A G HCAR2 Silent p.H5H 0.09 TCGA-VQ-A924-01 12 123201270 123201270 A G HCAR3 Silent p.H5H 0.20 TCGA-VQ-A924-01 12 123285973 123285973 T C CCDC62 Missense_Mutation p.L427S 0.34 tolerated(0.11) benign(0.394) TCGA-VQ-A924-01 12 123332620 123332620 G A HIP1R Missense_Mutation p.V46M 0.27 deleterious(0) probably_damaging(0.986) TCGA-VQ-A924-01 12 123351996 123351996 C T VPS37B Silent p.P175P 0.28 TCGA-VQ-A924-01 12 123471253 123471253 G A PITPNM2 Silent p.D1179D 0.28 TCGA-VQ-A924-01 12 123706380 123706380 G T MPHOSPH9 5'UTR 0.12 TCGA-VQ-A924-01 12 124839429 124839429 G A NCOR2 Silent p.G1146G 0.28 TCGA-VQ-A924-01 12 130648241 130648241 G A FZD10 Missense_Mutation p.D252N 0.25 deleterious(0.03) probably_damaging(0.998) TCGA-VQ-A924-01 12 132334345 132334345 A G MMP17 Splice_Site p.X402_splice 0.27 TCGA-VQ-A924-01 12 132403792 132403792 C T ULK1 Silent p.F849F 0.38 TCGA-VQ-A924-01 12 133244981 133244981 G A POLE Missense_Mutation p.R712C 0.30 deleterious(0) probably_damaging(0.932) TCGA-VQ-A924-01 12 176528 176528 C T IQSEC3 Silent p.C160C 0.21 TCGA-VQ-A924-01 12 2061664 2061664 G A DCP1B Missense_Mutation p.A481V 0.19 deleterious(0.01) benign(0.14) TCGA-VQ-A924-01 12 20766585 20766585 G - PDE3A Frame_Shift_Del p.C407Ffs*19 0.16 TCGA-VQ-A924-01 12 21654878 21654878 G A GOLT1B Silent p.T7T 0.53 TCGA-VQ-A924-01 12 21958242 21958242 G T ABCC9 Intron 0.23 TCGA-VQ-A924-01 12 22487094 22487094 G A ST8SIA1 Missense_Mutation p.R25W 0.23 deleterious(0) probably_damaging(0.998) TCGA-VQ-A924-01 12 24736478 24736478 C T LINC00477 RNA 0.35 TCGA-VQ-A924-01 12 27110594 27110594 G A FGFR1OP2 Missense_Mutation p.R105Q 0.21 deleterious(0) probably_damaging(0.991) TCGA-VQ-A924-01 12 27844825 27844825 C T PPFIBP1 Silent p.R949R 0.20 TCGA-VQ-A924-01 12 28605450 28605450 G A CCDC91 Missense_Mutation p.V322I 0.30 tolerated(0.42) benign(0.001) TCGA-VQ-A924-01 12 29524549 29524549 C T ERGIC2 Silent p.R6R 0.33 TCGA-VQ-A924-01 12 29786172 29786172 C G TMTC1 Missense_Mutation p.V346L 0.34 tolerated(0.09) benign(0.088) TCGA-VQ-A924-01 12 30904029 30904029 T C CAPRIN2 Silent p.G153G 0.24 TCGA-VQ-A924-01 12 31576548 31576548 T C DENND5B Missense_Mutation p.H818R 0.32 tolerated(0.35) benign(0) TCGA-VQ-A924-01 12 32458765 32458765 A - BICD1 Frame_Shift_Del p.N240Mfs*28 0.24 TCGA-VQ-A924-01 12 39047826 39047826 A G CPNE8 Missense_Mutation p.L518P 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A924-01 12 39734129 39734129 T - KIF21A Frame_Shift_Del p.V717Lfs*12 0.28 TCGA-VQ-A924-01 12 46315868 46315868 A G SCAF11 Missense_Mutation p.L1452P 0.21 tolerated(0.35) benign(0.002) TCGA-VQ-A924-01 12 48132995 48132995 G A RAPGEF3 Missense_Mutation p.R798W 0.41 deleterious(0) probably_damaging(0.997) TCGA-VQ-A924-01 12 49308225 49308225 C T CCDC65 Silent p.Y113Y 0.07 TCGA-VQ-A924-01 12 49315939 49315939 C T FKBP11 Missense_Mutation p.R145Q 0.24 tolerated(0.15) benign(0.032) TCGA-VQ-A924-01 12 49374348 49374348 G - WNT1 Frame_Shift_Del p.G169Afs*30 0.30 TCGA-VQ-A924-01 12 49435107 49435107 G A KMT2D Missense_Mutation p.S2149L 0.33 benign(0.005) TCGA-VQ-A924-01 12 49438067 49438067 G A KMT2D Nonsense_Mutation p.R1702* 0.40 TCGA-VQ-A924-01 12 49578998 49578998 A G TUBA1A Missense_Mutation p.I384T 0.24 deleterious_low_confidence(0.03) probably_damaging(0.993) TCGA-VQ-A924-01 12 49724915 49724915 G A TROAP Intron 0.47 TCGA-VQ-A924-01 12 51318803 51318803 T - METTL7A 5'UTR 0.19 TCGA-VQ-A924-01 12 51398655 51398655 C T SLC11A2 Silent p.G144G 0.41 TCGA-VQ-A924-01 12 51847323 51847323 G C SLC4A8 Missense_Mutation p.R138S 0.23 deleterious(0.01) benign(0.018) TCGA-VQ-A924-01 12 52627392 52627394 CTT - KRT7 In_Frame_Del p.F105del 0.26 TCGA-VQ-A924-01 12 52967189 52967189 G - KRT74 Frame_Shift_Del p.L125Sfs*23 0.26 TCGA-VQ-A924-01 12 53042883 53042883 C T KRT2 Missense_Mutation p.V289M 0.26 deleterious(0.01) probably_damaging(1) TCGA-VQ-A924-01 12 53291192 53291192 G T KRT8 3'UTR 0.29 TCGA-VQ-A924-01 12 53343079 53343079 G A KRT18 Missense_Mutation p.G41D 0.35 deleterious(0.02) benign(0.157) TCGA-VQ-A924-01 12 53453399 53453399 G - TENC1 Frame_Shift_Del p.K670Nfs*96 0.25 TCGA-VQ-A924-01 12 53607915 53607915 C T RARG Silent p.R247R 0.28 TCGA-VQ-A924-01 12 53662830 53662830 C T ESPL1 Missense_Mutation p.A35V 0.18 tolerated(0.21) benign(0.01) TCGA-VQ-A924-01 12 53680394 53680394 T C ESPL1 Missense_Mutation p.W1292R 0.23 deleterious(0) probably_damaging(0.997) TCGA-VQ-A924-01 12 56154414 56154414 T C SARNP Missense_Mutation p.D171G 0.25 deleterious(0.01) probably_damaging(0.992) TCGA-VQ-A924-01 12 56222204 56222204 C - DNAJC14 Frame_Shift_Del p.G80Vfs*176 0.27 TCGA-VQ-A924-01 12 56397975 56397975 C A SUOX Silent p.R268R 0.20 TCGA-VQ-A924-01 12 56478854 56478854 G A ERBB3 Missense_Mutation p.V104M 0.26 deleterious(0.05) possibly_damaging(0.789) TCGA-VQ-A924-01 12 56482532 56482532 C T ERBB3 Missense_Mutation p.A330V 0.29 tolerated(0.88) benign(0.239) TCGA-VQ-A924-01 12 56563937 56563939 CTT - SMARCC2 In_Frame_Del p.K770del 0.28 TCGA-VQ-A924-01 12 57039103 57039103 T G ATP5B Silent p.P54P 0.24 TCGA-VQ-A924-01 12 57127972 57127972 T - PRIM1 Frame_Shift_Del p.N401Ifs*? 0.21 TCGA-VQ-A924-01 12 57389721 57389721 G A GPR182 Missense_Mutation p.C243Y 0.31 tolerated(1) benign(0.01) TCGA-VQ-A924-01 12 57550063 57550063 C T LRP1 Nonsense_Mutation p.R472* 0.18 TCGA-VQ-A924-01 12 57920934 57920934 C - MBD6 Frame_Shift_Del p.P671Lfs*4 0.30 TCGA-VQ-A924-01 12 58113905 58113905 C T OS9 Missense_Mutation p.R542W 0.21 deleterious(0) probably_damaging(0.973) TCGA-VQ-A924-01 12 58121136 58121136 C T AGAP2-AS1 Missense_Mutation p.R121C 0.37 possibly_damaging(0.835) TCGA-VQ-A924-01 12 6145654 6145654 G T VWF Silent p.R816R 0.31 TCGA-VQ-A924-01 12 62786091 62786091 A - USP15 Frame_Shift_Del p.K783Nfs*4 0.16 TCGA-VQ-A924-01 12 65639521 65639521 T C LEMD3 Silent p.I820I 0.27 TCGA-VQ-A924-01 12 66771005 66771005 C T GRIP1 Silent p.A842A 0.18 TCGA-VQ-A924-01 12 68051369 68051369 A G DYRK2 Missense_Mutation p.I228V 0.20 deleterious(0.01) possibly_damaging(0.491) TCGA-VQ-A924-01 12 7045241 7045241 C - ATN1 Frame_Shift_Del p.P272Qfs*26 0.34 TCGA-VQ-A924-01 12 72338117 72338117 G A TPH2 Missense_Mutation p.R100Q 0.26 tolerated(0.14) benign(0.137) TCGA-VQ-A924-01 12 72667026 72667026 C A TRHDE Silent p.A156A 0.33 TCGA-VQ-A924-01 12 7476149 7476149 A T ACSM4 Missense_Mutation p.K434I 0.28 tolerated(0.39) benign(0.088) TCGA-VQ-A924-01 12 7527206 7527206 C T CD163L1 Missense_Mutation p.V1081M 0.22 tolerated(0.17) benign(0.232) TCGA-VQ-A924-01 12 76425041 76425042 - G PHLDA1 Frame_Shift_Ins p.D161Rfs*256 0.25 TCGA-VQ-A924-01 12 76442093 76442093 A - NAP1L1 3'UTR 0.43 TCGA-VQ-A924-01 12 85450016 85450016 A - LRRIQ1 Frame_Shift_Del p.N484Mfs*4 0.17 TCGA-VQ-A924-01 12 86383211 86383211 A - MGAT4C Frame_Shift_Del p.F38Lfs*2 0.21 TCGA-VQ-A924-01 12 89885756 89885756 G T POC1B Missense_Mutation p.L137M 0.32 deleterious(0.03) probably_damaging(0.988) TCGA-VQ-A924-01 12 91348233 91348233 G - CCER1 Frame_Shift_Del p.P96Lfs*39 0.17 TCGA-VQ-A924-01 12 91449208 91449208 A C KERA Missense_Mutation p.L284R 0.27 deleterious(0) probably_damaging(0.997) TCGA-VQ-A924-01 12 94637734 94637734 T C PLXNC1 Missense_Mutation p.M774T 0.27 tolerated(0.42) benign(0.004) TCGA-VQ-A924-01 12 94975692 94975692 G A TMCC3 Missense_Mutation p.A234V 0.28 tolerated(0.25) benign(0.105) TCGA-VQ-A924-01 12 96641136 96641136 C T ELK3 Missense_Mutation p.A209V 0.30 tolerated(0.3) benign(0.001) TCGA-VQ-A924-01 13 102106423 102106423 C T ITGBL1 Silent p.C96C 0.21 TCGA-VQ-A924-01 13 103459501 103459501 C G BIVM 5'UTR 0.54 TCGA-VQ-A924-01 13 103468872 103468872 T G BIVM-ERCC5 Missense_Mutation p.I163M 0.21 tolerated_low_confidence(0.15) benign(0.113) TCGA-VQ-A924-01 13 111372072 111372072 G A ING1 Silent p.T354T 0.29 TCGA-VQ-A924-01 13 113481077 113481077 T C ATP11A Missense_Mutation p.Y365H 0.21 deleterious(0) probably_damaging(1) TCGA-VQ-A924-01 13 113773328 113773328 C T F7 3'UTR 0.26 TCGA-VQ-A924-01 13 20567473 20567473 A - ZMYM2 Frame_Shift_Del p.N89Mfs*25 0.26 TCGA-VQ-A924-01 13 21565435 21565435 G A LATS2 Missense_Mutation p.R151W 0.06 deleterious(0.03) probably_damaging(0.999) TCGA-VQ-A924-01 13 31480852 31480852 G - MEDAG Frame_Shift_Del p.G69Afs*29 0.40 TCGA-VQ-A924-01 13 32653149 32653149 T C FRY Silent p.R83R 0.31 TCGA-VQ-A924-01 13 32776082 32776082 T C FRY Missense_Mutation p.Y1251H 0.21 deleterious(0) probably_damaging(0.961) TCGA-VQ-A924-01 13 36909948 36909948 T - SPG20 Frame_Shift_Del p.N7Mfs*25 0.20 TCGA-VQ-A924-01 13 37014296 37014296 C T CCNA1 Silent p.C358C 0.46 TCGA-VQ-A924-01 13 37399662 37399662 A - RFXAP Frame_Shift_Del p.R235Dfs*5 0.24 TCGA-VQ-A924-01 13 38156560 38156560 G A POSTN Silent p.N445N 0.23 TCGA-VQ-A924-01 13 42275581 42275581 C T VWA8 Nonsense_Mutation p.W1104* 0.25 TCGA-VQ-A924-01 13 43544769 43544769 G A EPSTI1 Missense_Mutation p.R76W 0.28 deleterious(0) probably_damaging(1) TCGA-VQ-A924-01 13 45147558 45147558 G A TSC22D1 Missense_Mutation p.P885S 0.19 deleterious(0.02) possibly_damaging(0.883) TCGA-VQ-A924-01 13 45578440 45578440 T C GPALPP1 Missense_Mutation p.V30A 0.48 tolerated(0.17) benign(0.008) TCGA-VQ-A924-01 13 50108098 50108098 A G RCBTB1 3'UTR 0.27 TCGA-VQ-A924-01 13 53602984 53602984 C A OLFM4 Missense_Mutation p.L5I 0.22 deleterious_low_confidence(0.03) unknown(0) TCGA-VQ-A924-01 13 60498954 60498954 T - DIAPH3 Frame_Shift_Del p.I709Lfs*7 0.17 TCGA-VQ-A924-01 13 61987885 61987885 G - PCDH20 Frame_Shift_Del p.P116Lfs*11 0.25 TCGA-VQ-A924-01 13 70681683 70681683 C T KLHL1 Missense_Mutation p.G50E 0.31 deleterious_low_confidence(0) benign(0.4) TCGA-VQ-A924-01 13 76427393 76427393 C A LMO7 Silent p.P1277P 0.17 TCGA-VQ-A924-01 13 76432182 76432182 T A LMO7 3'UTR 0.33 TCGA-VQ-A924-01 13 78492514 78492514 C T EDNRB Silent p.S155S 0.18 TCGA-VQ-A924-01 13 88330062 88330062 C T SLITRK5 Nonsense_Mutation p.Q807* 0.32 TCGA-VQ-A924-01 13 92003369 92003369 T C MIR17HG RNA 0.22 TCGA-VQ-A924-01 13 95117959 95117960 - C DCT Frame_Shift_Ins p.A264Gfs*11 0.30 TCGA-VQ-A924-01 13 95364066 95364066 G A SOX21 Missense_Mutation p.R80W 0.23 deleterious(0) probably_damaging(1) TCGA-VQ-A924-01 13 95813533 95813533 C T ABCC4 Missense_Mutation p.V789I 0.15 tolerated(0.47) benign(0.013) TCGA-VQ-A924-01 14 101010278 101010278 G A BEGAIN Missense_Mutation p.R90C 0.36 deleterious(0.03) probably_damaging(0.999) TCGA-VQ-A924-01 14 101419737 101419737 C T SNORD114-3 RNA 0.29 TCGA-VQ-A924-01 14 103438300 103438300 C T CDC42BPB Missense_Mutation p.A614T 0.31 tolerated(0.3) benign(0) TCGA-VQ-A924-01 14 104484490 104484490 A G TDRD9 Missense_Mutation p.Q798R 0.24 tolerated(0.2) benign(0.14) TCGA-VQ-A924-01 14 104641681 104641681 C T KIF26A Silent p.D852D 0.19 TCGA-VQ-A924-01 14 104642925 104642925 C - KIF26A Frame_Shift_Del p.R1269Gfs*7 0.25 TCGA-VQ-A924-01 14 105063428 105063428 G A TMEM179 Silent p.S114S 0.16 TCGA-VQ-A924-01 14 105419418 105419418 G A AHNAK2 Silent p.P790P 0.27 TCGA-VQ-A924-01 14 105518249 105518249 G A GPR132 Silent p.N75N 0.26 TCGA-VQ-A924-01 14 105927217 105927217 C T MTA1 Missense_Mutation p.A290V 0.38 deleterious(0) probably_damaging(0.997) TCGA-VQ-A924-01 14 106208517 106208517 G - IGHG1 Frame_Shift_Del p.P128Qfs*8 0.22 TCGA-VQ-A924-01 14 106805213 106805213 G A IGHV4-31 Missense_Mutation p.A117V 0.09 deleterious_low_confidence(0.04) benign(0.029) TCGA-VQ-A924-01 14 106829873 106829873 T C IGHV4-34 Silent p.L30L 0.31 TCGA-VQ-A924-01 14 20665777 20665777 G A OR11G2 Missense_Mutation p.A95T 0.33 tolerated(1) benign(0) TCGA-VQ-A924-01 14 21360472 21360472 C A RNASE3 3'UTR 0.36 TCGA-VQ-A924-01 14 21852162 21852162 G A SUPT16H 5'UTR 0.27 TCGA-VQ-A924-01 14 23345906 23345906 C - LRP10 Frame_Shift_Del p.L480Sfs*29 0.22 TCGA-VQ-A924-01 14 23511378 23511378 C T PSMB11 5'UTR 0.30 TCGA-VQ-A924-01 14 23511662 23511662 G A PSMB11 Silent p.A76A 0.23 TCGA-VQ-A924-01 14 23517514 23517514 G - CDH24 Frame_Shift_Del p.P712Rfs*129 0.30 TCGA-VQ-A924-01 14 23528415 23528415 C T ACIN1 Missense_Mutation p.R1323H 0.24 unknown(0) TCGA-VQ-A924-01 14 24661916 24661916 G - TM9SF1 Frame_Shift_Del p.P302Hfs*50 0.21 TCGA-VQ-A924-01 14 24885045 24885045 C T NYNRIN Missense_Mutation p.R1364C 0.31 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-VQ-A924-01 14 24886336 24886337 - G NYNRIN Frame_Shift_Ins p.E1796Gfs*11 0.08 TCGA-VQ-A924-01 14 31354720 31354720 C T COCH Missense_Mutation p.A285V 0.16 deleterious(0.03) probably_damaging(0.995) TCGA-VQ-A924-01 14 31597145 31597145 A G HECTD1 Silent p.T1609T 0.26 TCGA-VQ-A924-01 14 36005057 36005057 T - INSM2 Frame_Shift_Del p.F535Lfs*6 0.28 TCGA-VQ-A924-01 14 36064948 36064949 - T RALGAPA1 Frame_Shift_Ins p.N1861Kfs*29 0.28 TCGA-VQ-A924-01 14 38724159 38724159 T C CLEC14A Missense_Mutation p.T357A 0.26 deleterious_low_confidence(0.01) benign(0.255) TCGA-VQ-A924-01 14 42360637 42360637 T - LRFN5 Frame_Shift_Del p.L525Wfs*5 0.22 TCGA-VQ-A924-01 14 45693141 45693141 C A MIS18BP1 Missense_Mutation p.K883N 0.25 tolerated(0.07) benign(0.001) TCGA-VQ-A924-01 14 59834294 59834294 C T DAAM1 Missense_Mutation p.R1002C 0.32 deleterious(0) probably_damaging(0.993) TCGA-VQ-A924-01 14 60574596 60574596 G A PCNXL4 Intron 0.29 TCGA-VQ-A924-01 14 61446226 61446226 C T TRMT5 Silent p.P130P 0.24 TCGA-VQ-A924-01 14 62014511 62014511 C T RP11-47I22.4 Silent p.G109G 0.28 TCGA-VQ-A924-01 14 67831614 67831614 G T EIF2S1 Missense_Mutation p.G44C 0.16 deleterious(0) probably_damaging(1) TCGA-VQ-A924-01 14 68050566 68050566 C T PLEKHH1 Missense_Mutation p.R1179C 0.19 deleterious(0.01) benign(0.325) TCGA-VQ-A924-01 14 69256455 69256455 C - ZFP36L1 Frame_Shift_Del p.G271Vfs*36 0.24 TCGA-VQ-A924-01 14 70512871 70512871 G A SLC8A3 Silent p.G859G 0.35 TCGA-VQ-A924-01 14 70633741 70633741 C A SLC8A3 Missense_Mutation p.G467C 0.26 deleterious(0.03) probably_damaging(0.971) TCGA-VQ-A924-01 14 71109123 71109123 C - TTC9 Frame_Shift_Del p.E96Nfs*15 0.40 TCGA-VQ-A924-01 14 71197416 71197416 G A MAP3K9 Missense_Mutation p.A1013V 0.26 deleterious(0.02) possibly_damaging(0.641) TCGA-VQ-A924-01 14 73673122 73673124 AGA - PSEN1 In_Frame_Del p.E300del 0.30 TCGA-VQ-A924-01 14 74516445 74516445 T C CCDC176 Missense_Mutation p.L278P 0.23 deleterious(0.04) possibly_damaging(0.847) TCGA-VQ-A924-01 14 74999144 74999144 G A LTBP2 Missense_Mutation p.R658W 0.20 deleterious(0) probably_damaging(1) TCGA-VQ-A924-01 14 75052638 75052638 C T LTBP2 Missense_Mutation p.S250N 0.30 deleterious(0.03) benign(0.017) TCGA-VQ-A924-01 14 75329939 75329939 A G PROX2 Missense_Mutation p.L200P 0.26 deleterious(0.04) benign(0.038) TCGA-VQ-A924-01 14 75513711 75513711 G A MLH3 Missense_Mutation p.S883F 0.28 tolerated(0.18) possibly_damaging(0.853) TCGA-VQ-A924-01 14 75515217 75515217 C T MLH3 Missense_Mutation p.R381H 0.27 tolerated(0.56) benign(0.001) TCGA-VQ-A924-01 14 77930946 77930946 A G AHSA1 Missense_Mutation p.T160A 0.22 deleterious(0.03) benign(0.318) TCGA-VQ-A924-01 14 88652276 88652276 C T KCNK10 Missense_Mutation p.R412H 0.25 tolerated_low_confidence(0.12) benign(0.007) TCGA-VQ-A924-01 14 91007877 91007877 G A TTC7B Silent p.D789D 0.17 TCGA-VQ-A924-01 14 91366489 91366489 T - RPS6KA5 Frame_Shift_Del p.S448Vfs*9 0.27 TCGA-VQ-A924-01 14 92136190 92136190 G A CATSPERB Nonsense_Mutation p.R419* 0.24 TCGA-VQ-A924-01 14 93118458 93118458 G T RIN3 Missense_Mutation p.R355M 0.20 deleterious(0.04) probably_damaging(0.962) TCGA-VQ-A924-01 14 93264172 93264172 A G GOLGA5 Silent p.S130S 0.43 TCGA-VQ-A924-01 14 94400924 94400924 T C ASB2 3'UTR 0.22 TCGA-VQ-A924-01 14 96730378 96730379 - T BDKRB1 Frame_Shift_Ins p.L121Ffs*76 0.22 TCGA-VQ-A924-01 14 99641914 99641914 G A BCL11B Missense_Mutation p.P420L 0.22 tolerated(0.06) possibly_damaging(0.588) TCGA-VQ-A924-01 15 101464882 101464882 G A LRRK1 Silent p.V15V 0.33 TCGA-VQ-A924-01 15 20644278 20644278 G A HERC2P3 RNA 0.13 TCGA-VQ-A924-01 15 22368834 22368834 G A OR4M2 Missense_Mutation p.V87M 0.13 deleterious(0.03) benign(0.429) TCGA-VQ-A924-01 15 22383261 22383261 G A OR4N4 Silent p.R263R 0.04 TCGA-VQ-A924-01 15 24923222 24923222 C T NPAP1 Silent p.S736S 0.07 TCGA-VQ-A924-01 15 25310193 25310193 A - SNORD116-6 RNA 0.25 TCGA-VQ-A924-01 15 25615825 25615825 T C UBE3A Missense_Mutation p.Y502C 0.22 deleterious(0) probably_damaging(0.912) TCGA-VQ-A924-01 15 25926021 25926021 G A ATP10A Missense_Mutation p.T1205I 0.35 deleterious(0.04) benign(0.067) TCGA-VQ-A924-01 15 25940174 25940174 G - ATP10A Frame_Shift_Del p.S961Pfs*13 0.24 TCGA-VQ-A924-01 15 27193285 27193285 G A GABRA5 Missense_Mutation p.V432I 0.43 tolerated(0.28) benign(0.06) TCGA-VQ-A924-01 15 28235724 28235724 C T OCA2 Missense_Mutation p.D372N 0.25 tolerated(0.05) benign(0.327) TCGA-VQ-A924-01 15 28377898 28377898 G A HERC2 Silent p.S4103S 0.20 TCGA-VQ-A924-01 15 28508198 28508198 C T HERC2 Missense_Mutation p.R663H 0.17 benign(0.224) TCGA-VQ-A924-01 15 31197274 31197275 - A FAN1 Frame_Shift_Ins p.N138Kfs*4 0.12 TCGA-VQ-A924-01 15 31355449 31355450 - C TRPM1 Frame_Shift_Ins p.N298* 0.25 TCGA-VQ-A924-01 15 32929749 32929749 G A ARHGAP11A Silent p.S925S 0.24 TCGA-VQ-A924-01 15 34295281 34295281 C T AVEN Missense_Mutation p.G133R 0.27 tolerated(0.08) probably_damaging(0.991) TCGA-VQ-A924-01 15 35044940 35044940 G - GJD2 Frame_Shift_Del p.C236Afs*19 0.19 TCGA-VQ-A924-01 15 40268755 40268755 C T EIF2AK4 Silent p.N653N 0.40 TCGA-VQ-A924-01 15 40703480 40703480 G A IVD Missense_Mutation p.G163R 0.25 deleterious(0) probably_damaging(1) TCGA-VQ-A924-01 15 40917318 40917318 G T CASC5 Missense_Mutation p.R1645I 0.24 deleterious(0.01) possibly_damaging(0.807) TCGA-VQ-A924-01 15 41029894 41029894 T - RMDN3 Frame_Shift_Del p.T386Lfs*22 0.31 TCGA-VQ-A924-01 15 42133013 42133013 C T PLA2G4B Silent p.T318T 0.32 TCGA-VQ-A924-01 15 42182370 42182370 C T SPTBN5 Missense_Mutation p.V140M 0.23 probably_damaging(1) TCGA-VQ-A924-01 15 42480016 42480016 C A VPS39 Silent p.V127V 0.21 TCGA-VQ-A924-01 15 45724306 45724307 TG - C15orf48 Frame_Shift_Del p.V54Gfs*19 0.13 TCGA-VQ-A924-01 15 49448167 49448167 G T COPS2 5'Flank 0.17 TCGA-VQ-A924-01 15 49659684 49659684 T G FAM227B Missense_Mutation p.K411T 0.30 tolerated(0.07) possibly_damaging(0.463) TCGA-VQ-A924-01 15 50925140 50925140 T - TRPM7 Frame_Shift_Del p.T353Hfs*16 0.20 TCGA-VQ-A924-01 15 51207682 51207682 G A AP4E1 Missense_Mutation p.C87Y 0.15 deleterious(0) probably_damaging(0.987) TCGA-VQ-A924-01 15 51696718 51696718 G A GLDN Missense_Mutation p.A475T 0.25 deleterious(0) probably_damaging(0.998) TCGA-VQ-A924-01 15 51827941 51827941 A G DMXL2 Silent p.S785S 0.27 TCGA-VQ-A924-01 15 52060584 52060584 G T TMOD2 Missense_Mutation p.E84D 0.32 tolerated(0.22) benign(0.433) TCGA-VQ-A924-01 15 52258410 52258412 TCA - LEO1 In_Frame_Del p.D116del 0.24 TCGA-VQ-A924-01 15 52536618 52536618 T - MYO5C Frame_Shift_Del p.K775Nfs*10 0.19 TCGA-VQ-A924-01 15 52672047 52672047 G A MYO5A Nonsense_Mutation p.R691* 0.23 TCGA-VQ-A924-01 15 55931936 55931936 C A PRTG Missense_Mutation p.R743M 0.27 deleterious(0.03) possibly_damaging(0.704) TCGA-VQ-A924-01 15 59179215 59179215 C A SLTM Nonsense_Mutation p.G932* 0.22 TCGA-VQ-A924-01 15 59416988 59416988 G A CCNB2 Missense_Mutation p.S370N 0.22 deleterious(0) probably_damaging(1) TCGA-VQ-A924-01 15 62237923 62237923 C T VPS13C Missense_Mutation p.M1713I 0.16 tolerated(0.25) benign(0.378) TCGA-VQ-A924-01 15 62352579 62352579 C T VPS13C 5'UTR 0.32 TCGA-VQ-A924-01 15 63029098 63029098 C T TLN2 Missense_Mutation p.A1127V 0.31 deleterious(0) possibly_damaging(0.703) TCGA-VQ-A924-01 15 63571506 63571506 G A APH1B Missense_Mutation p.R87Q 0.21 deleterious(0) probably_damaging(1) TCGA-VQ-A924-01 15 63984717 63984717 A - HERC1 Frame_Shift_Del p.L1908* 0.15 TCGA-VQ-A924-01 15 64967247 64967247 A - ZNF609 Frame_Shift_Del p.K734Rfs*12 0.23 TCGA-VQ-A924-01 15 65041656 65041656 C A RBPMS2 Missense_Mutation p.A81S 0.05 deleterious(0.02) probably_damaging(0.951) TCGA-VQ-A924-01 15 65347276 65347276 C T RASL12 Silent p.A254A 0.07 TCGA-VQ-A924-01 15 65412220 65412220 T - PDCD7 Frame_Shift_Del p.K361Sfs*17 0.23 TCGA-VQ-A924-01 15 65551785 65551785 G T PARP16 Missense_Mutation p.S311Y 0.31 deleterious(0) probably_damaging(1) TCGA-VQ-A924-01 15 65677373 65677373 C A IGDCC4 Silent p.P1087P 0.26 TCGA-VQ-A924-01 15 71174671 71174671 A T THAP10 3'UTR 0.25 TCGA-VQ-A924-01 15 72252363 72252363 A G MYO9A Silent p.F687F 0.25 TCGA-VQ-A924-01 15 72864489 72864489 G A ARIH1 Missense_Mutation p.A400T 0.32 deleterious(0.02) probably_damaging(0.926) TCGA-VQ-A924-01 15 73996319 73996319 C T CD276 Silent p.A351A 0.29 TCGA-VQ-A924-01 15 74326843 74326843 G A PML Missense_Mutation p.S561N 0.29 deleterious(0) probably_damaging(0.976) TCGA-VQ-A924-01 15 74467859 74467859 G A ISLR Silent p.P220P 0.42 TCGA-VQ-A924-01 15 75630400 75630400 C T COMMD4 Intron 0.24 TCGA-VQ-A924-01 15 75688684 75688684 G A SIN3A Nonsense_Mutation p.Q670* 0.27 TCGA-VQ-A924-01 15 75982172 75982172 G A CSPG4 Missense_Mutation p.P412S 0.21 tolerated(0.12) benign(0.045) TCGA-VQ-A924-01 15 76074650 76074651 AG - RN7SL319P 5'Flank 0.17 TCGA-VQ-A924-01 15 78526785 78526785 T A ACSBG1 Missense_Mutation p.D20V 0.28 deleterious_low_confidence(0.01) benign(0.328) TCGA-VQ-A924-01 15 80872870 80872870 C T ARNT2 Missense_Mutation p.R578C 0.17 deleterious(0) possibly_damaging(0.876) TCGA-VQ-A924-01 15 81605475 81605475 T C STARD5 3'UTR 0.55 TCGA-VQ-A924-01 15 81630233 81630233 C T TMC3 Missense_Mutation p.R705Q 0.25 deleterious(0.03) probably_damaging(0.98) TCGA-VQ-A924-01 15 83437640 83437640 A G FSD2 Silent p.G515G 0.16 TCGA-VQ-A924-01 15 83805312 83805312 T - TM6SF1 Frame_Shift_Del p.L336* 0.17 TCGA-VQ-A924-01 15 85164307 85164307 T C ZSCAN2 Missense_Mutation p.I294T 0.26 tolerated(0.1) probably_damaging(0.996) TCGA-VQ-A924-01 15 85383341 85383341 C T ALPK3 Silent p.N479N 0.26 TCGA-VQ-A924-01 15 89195503 89195503 C T ISG20 Missense_Mutation p.R131W 0.16 deleterious(0) probably_damaging(0.966) TCGA-VQ-A924-01 15 90167181 90167181 C T TICRR Missense_Mutation p.H1214Y 0.28 tolerated(0.93) benign(0.259) TCGA-VQ-A924-01 15 91490110 91490110 G A UNC45A Missense_Mutation p.S489N 0.20 tolerated(0.1) benign(0.005) TCGA-VQ-A924-01 15 94913332 94913332 T C MCTP2 Missense_Mutation p.L502P 0.23 deleterious(0.01) possibly_damaging(0.781) TCGA-VQ-A924-01 16 1270896 1270896 C T CACNA1H Missense_Mutation p.R2322W 0.33 tolerated_low_confidence(0.09) benign(0.001) TCGA-VQ-A924-01 16 1400842 1400842 G A TSR3 Silent p.C164C 0.20 TCGA-VQ-A924-01 16 14674735 14674736 - A PARN Frame_Shift_Ins p.N420* 0.28 TCGA-VQ-A924-01 16 1479203 1479203 G - C16orf91 Frame_Shift_Del p.P48Rfs*36 0.16 TCGA-VQ-A924-01 16 148227 148228 - G NPRL3 Frame_Shift_Ins p.A281Cfs*50 0.22 TCGA-VQ-A924-01 16 15198536 15198536 T - RP11-1186N24.5 3'Flank 0.13 TCGA-VQ-A924-01 16 16184310 16184310 G A ABCC1 Missense_Mutation p.V837I 0.16 tolerated(0.48) benign(0) TCGA-VQ-A924-01 16 17211540 17211540 C T XYLT1 Silent p.A840A 0.14 TCGA-VQ-A924-01 16 20043227 20043227 C T GPR139 Missense_Mutation p.A298T 0.21 tolerated(0.5) benign(0.001) TCGA-VQ-A924-01 16 20348727 20348727 C G UMOD Missense_Mutation p.E542D 0.21 tolerated(0.55) possibly_damaging(0.867) TCGA-VQ-A924-01 16 20548509 20548509 T G ACSM2B 3'UTR 0.21 TCGA-VQ-A924-01 16 20696603 20696603 G T ACSM1 Silent p.T105T 0.34 TCGA-VQ-A924-01 16 20948056 20948056 G A DNAH3 Missense_Mutation p.A3925V 0.22 tolerated(0.13) benign(0.141) TCGA-VQ-A924-01 16 22328444 22328444 C A POLR3E Missense_Mutation p.P261H 0.25 deleterious(0.04) possibly_damaging(0.495) TCGA-VQ-A924-01 16 23400284 23400284 C T COG7 Missense_Mutation p.R757H 0.25 deleterious(0) probably_damaging(0.99) TCGA-VQ-A924-01 16 24804855 24804855 A G TNRC6A Silent p.S1079S 0.20 TCGA-VQ-A924-01 16 24835030 24835030 C - TNRC6A Frame_Shift_Del p.P1932Qfs*82 0.24 TCGA-VQ-A924-01 16 24965977 24965977 G A ARHGAP17 Silent p.L267L 0.25 TCGA-VQ-A924-01 16 2522417 2522417 G A NTN3 Missense_Mutation p.V239I 0.25 tolerated(0.19) benign(0.001) TCGA-VQ-A924-01 16 2569361 2569361 C T RP11-20I23.1 Missense_Mutation p.P370S 0.25 unknown(0) TCGA-VQ-A924-01 16 28845419 28845419 C - ATXN2L Frame_Shift_Del p.R688Gfs*11 0.16 TCGA-VQ-A924-01 16 28925896 28925896 C T RABEP2 Silent p.R185R 0.19 TCGA-VQ-A924-01 16 29858516 29858516 A G MVP Splice_Site p.X756_splice 0.25 TCGA-VQ-A924-01 16 29937291 29937291 A G KCTD13 Missense_Mutation p.S22P 0.29 tolerated_low_confidence(0.08) benign(0) TCGA-VQ-A924-01 16 29998828 29998828 C A TAOK2 Silent p.R1079R 0.29 TCGA-VQ-A924-01 16 30006890 30006890 T C HIRIP3 Missense_Mutation p.S13G 0.21 tolerated(0.11) benign(0.017) TCGA-VQ-A924-01 16 30035097 30035097 G A C16orf92 Silent p.P60P 0.33 TCGA-VQ-A924-01 16 30594033 30594033 C A ZNF785 Nonsense_Mutation p.E356* 0.26 TCGA-VQ-A924-01 16 3065456 3065456 C - CLDN6 Frame_Shift_Del p.S190Pfs*70 0.29 TCGA-VQ-A924-01 16 3613957 3613957 G A NLRC3 Silent p.T374T 0.32 TCGA-VQ-A924-01 16 4385326 4385326 G A GLIS2 Missense_Mutation p.R236H 0.23 tolerated(0.27) benign(0.145) TCGA-VQ-A924-01 16 4431158 4431158 G A VASN Missense_Mutation p.G94R 0.44 tolerated(0.34) possibly_damaging(0.718) TCGA-VQ-A924-01 16 46694455 46694456 GT - VPS35 Frame_Shift_Del p.L774Gfs*18 0.28 TCGA-VQ-A924-01 16 47189659 47189659 C T ITFG1 Missense_Mutation p.A604T 0.25 deleterious(0) probably_damaging(0.981) TCGA-VQ-A924-01 16 50248178 50248178 G A PAPD5 Missense_Mutation p.S255N 0.11 deleterious(0) probably_damaging(0.998) TCGA-VQ-A924-01 16 53190023 53190023 T - CHD9 Frame_Shift_Del p.F9Lfs*11 0.09 TCGA-VQ-A924-01 16 53326843 53326843 A - CHD9 Frame_Shift_Del p.N1798Tfs*17 0.32 TCGA-VQ-A924-01 16 57604401 57604401 G A GPR114 Missense_Mutation p.V388I 0.31 tolerated(0.7) benign(0.016) TCGA-VQ-A924-01 16 58537664 58537664 G T NDRG4 Intron 0.22 TCGA-VQ-A924-01 16 61851492 61851492 C T CDH8 Missense_Mutation p.V390I 0.28 tolerated(0.06) benign(0.006) TCGA-VQ-A924-01 16 66946178 66946178 T C CDH16 Silent p.P505P 0.33 TCGA-VQ-A924-01 16 67222636 67222636 G A EXOC3L1 Missense_Mutation p.R139W 0.28 deleterious(0) possibly_damaging(0.841) TCGA-VQ-A924-01 16 67866389 67866389 G A CENPT Missense_Mutation p.T57M 0.18 tolerated(0.32) benign(0.034) TCGA-VQ-A924-01 16 68842394 68842394 A G CDH1 Missense_Mutation p.Q152R 0.27 tolerated(0.66) possibly_damaging(0.493) TCGA-VQ-A924-01 16 69148312 69148312 G A HAS3 Missense_Mutation p.V269M 0.30 deleterious(0.04) possibly_damaging(0.763) TCGA-VQ-A924-01 16 69374147 69374147 C T NIP7 Missense_Mutation p.S65L 0.27 deleterious(0.01) benign(0.043) TCGA-VQ-A924-01 16 706349 706349 C T WDR90 Missense_Mutation p.R672C 0.30 deleterious(0.01) benign(0.008) TCGA-VQ-A924-01 16 71712734 71712734 T C PHLPP2 Missense_Mutation p.M398V 0.30 deleterious(0) benign(0.118) TCGA-VQ-A924-01 16 71894463 71894463 C T ZNF821 Missense_Mutation p.G233R 0.15 deleterious(0) possibly_damaging(0.807) TCGA-VQ-A924-01 16 72830965 72830965 C T ZFHX3 Silent p.Q1872Q 0.28 TCGA-VQ-A924-01 16 72993288 72993288 T - ZFHX3 Frame_Shift_Del p.S253Afs*30 0.24 TCGA-VQ-A924-01 16 74506310 74506310 C A GLG1 Splice_Site p.X685_splice 0.20 TCGA-VQ-A924-01 16 75276722 75276722 C T BCAR1 Silent p.A139A 0.15 TCGA-VQ-A924-01 16 76350334 76350334 C T CNTNAP4 Missense_Mutation p.S12F 0.38 deleterious(0.01) possibly_damaging(0.895) TCGA-VQ-A924-01 16 76555129 76555129 T C CNTNAP4 Missense_Mutation p.F747L 0.20 tolerated(0.37) benign(0.076) TCGA-VQ-A924-01 16 77327127 77327127 C A ADAMTS18 Missense_Mutation p.R1012M 0.21 deleterious(0.04) possibly_damaging(0.472) TCGA-VQ-A924-01 16 77465425 77465425 G A ADAMTS18 Nonsense_Mutation p.R88* 0.28 TCGA-VQ-A924-01 16 775553 775553 C A CCDC78 Nonsense_Mutation p.E99* 0.26 TCGA-VQ-A924-01 16 79632943 79632943 A G MAF Missense_Mutation p.V286A 0.24 tolerated(0.2) probably_damaging(0.999) TCGA-VQ-A924-01 16 81222585 81222585 C T PKD1L2 Missense_Mutation p.E92K 0.25 tolerated(0.96) benign(0.023) TCGA-VQ-A924-01 16 81388085 81388085 C A GAN Missense_Mutation p.L120M 0.27 deleterious(0.03) benign(0.07) TCGA-VQ-A924-01 16 81965259 81965259 G T PLCG2 Missense_Mutation p.K913N 0.26 deleterious(0.01) benign(0.007) TCGA-VQ-A924-01 16 842546 842546 G - CHTF18 Frame_Shift_Del p.L481Sfs*3 0.24 TCGA-VQ-A924-01 16 85141671 85141672 - G FAM92B Frame_Shift_Ins p.L97Pfs*14 0.20 TCGA-VQ-A924-01 16 85688450 85688450 A G GSE1 Missense_Mutation p.D217G 0.21 deleterious(0.04) unknown(0) TCGA-VQ-A924-01 16 85689474 85689474 T G GSE1 Missense_Mutation p.S314A 0.16 tolerated(0.35) unknown(0) TCGA-VQ-A924-01 16 86600905 86600905 G A FOXC2 5'UTR 0.23 TCGA-VQ-A924-01 16 87446439 87446439 G - ZCCHC14 Frame_Shift_Del p.L493Cfs*6 0.23 TCGA-VQ-A924-01 16 87870208 87870208 C T SLC7A5 Missense_Mutation p.V396I 0.25 deleterious(0.03) benign(0.05) TCGA-VQ-A924-01 16 88677691 88677691 C A ZC3H18 Silent p.R408R 0.29 TCGA-VQ-A924-01 16 88932291 88932291 C T PABPN1L Missense_Mutation p.R105Q 0.22 tolerated(0.14) benign(0) TCGA-VQ-A924-01 16 89294742 89294742 C T ZNF778 Silent p.F654F 0.35 TCGA-VQ-A924-01 16 89348110 89348110 G A ANKRD11 Missense_Mutation p.R1614W 0.39 probably_damaging(0.991) TCGA-VQ-A924-01 16 89661841 89661841 A G CPNE7 Missense_Mutation p.I532V 0.18 tolerated(0.16) possibly_damaging(0.531) TCGA-VQ-A924-01 16 89724609 89724609 C A SPATA33 Intron 0.27 TCGA-VQ-A924-01 16 89775700 89775700 G A VPS9D1 Missense_Mutation p.A511V 0.27 tolerated(0.12) benign(0.091) TCGA-VQ-A924-01 16 89805499 89805499 G - FANCA Intron 0.22 TCGA-VQ-A924-01 16 89924847 89924847 C T SPIRE2 Missense_Mutation p.R402C 0.32 deleterious(0.02) probably_damaging(0.924) TCGA-VQ-A924-01 16 90161763 90161763 T C TUBB8P7 RNA 0.22 TCGA-VQ-A924-01 17 10265588 10265588 A G MYH13 Missense_Mutation p.Y118H 0.15 deleterious(0) probably_damaging(1) TCGA-VQ-A924-01 17 10301839 10301839 G A MYH8 Missense_Mutation p.A1367V 0.33 deleterious(0.03) possibly_damaging(0.651) TCGA-VQ-A924-01 17 10448817 10448817 G T MYH2 Silent p.T117T 0.27 TCGA-VQ-A924-01 17 13399498 13399498 T C HS3ST3A1 3'UTR 0.26 TCGA-VQ-A924-01 17 14248392 14248392 C T HS3ST3B1 Missense_Mutation p.T201M 0.14 deleterious(0) probably_damaging(0.997) TCGA-VQ-A924-01 17 15134279 15134279 G T PMP22 Silent p.A146A 0.32 TCGA-VQ-A924-01 17 15929902 15929902 C T TTC19 Missense_Mutation p.R294C 0.27 deleterious(0.04) probably_damaging(0.932) TCGA-VQ-A924-01 17 18023234 18023234 G C MYO15A Missense_Mutation p.V374L 0.27 benign(0.213) TCGA-VQ-A924-01 17 18034623 18034623 G A MYO15A Missense_Mutation p.R1370H 0.23 unknown(0) TCGA-VQ-A924-01 17 18814436 18814436 G A PRPSAP2 Missense_Mutation p.R202H 0.26 deleterious(0) probably_damaging(0.932) TCGA-VQ-A924-01 17 19617272 19617272 G - SLC47A2 Frame_Shift_Del p.N104Tfs*7 0.17 TCGA-VQ-A924-01 17 19689360 19689360 G A ULK2 Missense_Mutation p.A714V 0.23 tolerated(0.12) benign(0.001) TCGA-VQ-A924-01 17 21205553 21205554 - G MAP2K3 Frame_Shift_Ins p.E168Gfs*41 0.19 TCGA-VQ-A924-01 17 2265408 2265408 C A SGSM2 Missense_Mutation p.P101H 0.35 tolerated(0.19) benign(0.227) TCGA-VQ-A924-01 17 2596131 2596131 C T CLUH Silent p.A1046A 0.26 TCGA-VQ-A924-01 17 25974372 25974372 C A LGALS9 Missense_Mutation p.R279S 0.30 deleterious(0.03) probably_damaging(0.997) TCGA-VQ-A924-01 17 26946895 26946895 T A KIAA0100 Missense_Mutation p.M1835L 0.23 tolerated(0.74) benign(0.012) TCGA-VQ-A924-01 17 27233246 27233247 GA - PHF12 Frame_Shift_Del p.L990Qfs*60 0.28 TCGA-VQ-A924-01 17 27903953 27903953 G A GIT1 Silent p.S394S 0.20 TCGA-VQ-A924-01 17 29632035 29632035 T - EVI2B Frame_Shift_Del p.N198Tfs*6 0.33 TCGA-VQ-A924-01 17 30349234 30349234 A - LRRC37B Frame_Shift_Del p.N358Mfs*27 0.24 TCGA-VQ-A924-01 17 32953915 32953916 - C TMEM132E Frame_Shift_Ins p.R192Qfs*115 0.12 TCGA-VQ-A924-01 17 3336814 3336814 A - OR1E2 Frame_Shift_Del p.S108Rfs*3 0.15 TCGA-VQ-A924-01 17 33446659 33446659 G T RAD51D 5'UTR 0.22 TCGA-VQ-A924-01 17 34073290 34073290 G - GAS2L2 Frame_Shift_Del p.P409Lfs*92 0.23 TCGA-VQ-A924-01 17 34073319 34073319 C T GAS2L2 Silent p.S399S 0.27 TCGA-VQ-A924-01 17 34340221 34340221 C T CCL23 3'UTR 0.24 TCGA-VQ-A924-01 17 36478159 36478159 C - MRPL45 Frame_Shift_Del p.P272Lfs*9 0.21 TCGA-VQ-A924-01 17 36934627 36934627 T G PIP4K2B Splice_Site p.X219_splice 0.09 TCGA-VQ-A924-01 17 38151426 38151426 C T PSMD3 Intron 0.21 TCGA-VQ-A924-01 17 38179483 38179483 C T MED24 Silent p.K717K 0.22 TCGA-VQ-A924-01 17 3912976 3912976 G A ZZEF1 Silent p.D2885D 0.31 TCGA-VQ-A924-01 17 3916751 3916751 G A ZZEF1 Silent p.C2857C 0.17 TCGA-VQ-A924-01 17 39564888 39564888 C T AC003958.2 RNA 0.14 TCGA-VQ-A924-01 17 40174474 40174474 G - NKIRAS2 Frame_Shift_Del p.V53Cfs*78 0.14 TCGA-VQ-A924-01 17 4074039 4074039 C T ANKFY1 Missense_Mutation p.A1128T 0.30 deleterious(0) probably_damaging(0.999) TCGA-VQ-A924-01 17 40825491 40825491 C - PLEKHH3 Frame_Shift_Del p.V192Wfs*6 0.16 TCGA-VQ-A924-01 17 42248187 42248187 C A ASB16 Silent p.S10S 0.16 TCGA-VQ-A924-01 17 42478194 42478194 A G GPATCH8 Silent p.S417S 0.21 TCGA-VQ-A924-01 17 43112174 43112174 G A DCAKD Missense_Mutation p.A27V 0.32 tolerated(0.13) benign(0.252) TCGA-VQ-A924-01 17 44073953 44073953 C T MAPT Missense_Mutation p.P584S 0.15 deleterious(0.01) probably_damaging(0.994) TCGA-VQ-A924-01 17 44109601 44109601 G - KANSL1 Frame_Shift_Del p.Q968Sfs*46 0.15 TCGA-VQ-A924-01 17 44117234 44117234 C T KANSL1 Silent p.L679L 0.22 TCGA-VQ-A924-01 17 4436361 4436361 G A SPNS2 Missense_Mutation p.R342H 0.30 tolerated(0.05) possibly_damaging(0.828) TCGA-VQ-A924-01 17 4448107 4448107 C T MYBBP1A Missense_Mutation p.R807Q 0.39 deleterious(0.04) benign(0.118) TCGA-VQ-A924-01 17 45016254 45016254 G A GOSR2 Intron 0.44 TCGA-VQ-A924-01 17 45234618 45234618 G A CDC27 Missense_Mutation p.T203M 0.32 tolerated(0.29) benign(0.003) TCGA-VQ-A924-01 17 45689906 45689906 C T NPEPPS Missense_Mutation p.R726C 0.21 deleterious(0.01) probably_damaging(0.959) TCGA-VQ-A924-01 17 47590083 47590083 C T NGFR Silent p.D332D 0.31 TCGA-VQ-A924-01 17 47895351 47895351 A T KAT7 Missense_Mutation p.Q378L 0.22 tolerated(0.05) benign(0.002) TCGA-VQ-A924-01 17 47904881 47904881 G A KAT7 3'UTR 0.36 TCGA-VQ-A924-01 17 48153038 48153038 T G ITGA3 Missense_Mutation p.V538G 0.10 deleterious(0.04) possibly_damaging(0.76) TCGA-VQ-A924-01 17 48433260 48433260 G A XYLT2 Missense_Mutation p.V403M 0.11 tolerated(0.24) possibly_damaging(0.836) TCGA-VQ-A924-01 17 48918291 48918291 G A WFIKKN2 Missense_Mutation p.A548T 0.20 tolerated(0.31) benign(0.004) TCGA-VQ-A924-01 17 51900705 51900705 C T KIF2B Missense_Mutation p.S104L 0.35 tolerated(0.21) benign(0.091) TCGA-VQ-A924-01 17 5322712 5322712 T C NUP88 Missense_Mutation p.S87G 0.27 tolerated(0.44) benign(0) TCGA-VQ-A924-01 17 56247811 56247811 C A OR4D2 Missense_Mutation p.F265L 0.29 tolerated(0.59) benign(0.12) TCGA-VQ-A924-01 17 56570302 56570302 C A MTMR4 Missense_Mutation p.K1074N 0.18 tolerated(0.19) probably_damaging(0.917) TCGA-VQ-A924-01 17 57215235 57215235 T - SKA2 Intron 0.28 TCGA-VQ-A924-01 17 57465697 57465697 G T YPEL2 Nonsense_Mutation p.G43* 0.22 TCGA-VQ-A924-01 17 59481978 59481978 C T TBX2 Missense_Mutation p.T300M 0.27 deleterious(0.01) benign(0.379) TCGA-VQ-A924-01 17 61611667 61611667 G A KCNH6 Missense_Mutation p.D366N 0.33 deleterious(0.02) benign(0.152) TCGA-VQ-A924-01 17 61957696 61957696 G A GH2 3'UTR 0.30 TCGA-VQ-A924-01 17 61958153 61958153 T - GH2 Frame_Shift_Del p.G146Afs*5 0.19 TCGA-VQ-A924-01 17 61995728 61995728 G T GH1 Missense_Mutation p.A50D 0.28 deleterious(0) probably_damaging(0.991) TCGA-VQ-A924-01 17 6329146 6329146 G A AIPL1 Silent p.I263I 0.23 TCGA-VQ-A924-01 17 63532585 63532585 C - AXIN2 Frame_Shift_Del p.G665Afs*24 0.33 TCGA-VQ-A924-01 17 6387539 6387539 G A PITPNM3 Silent p.S116S 0.30 TCGA-VQ-A924-01 17 65871760 65871760 C A BPTF Intron 0.25 TCGA-VQ-A924-01 17 65960506 65960506 C A BPTF Missense_Mutation p.L2814I 0.11 probably_damaging(0.984) TCGA-VQ-A924-01 17 65989316 65989316 C T C17orf58 5'UTR 0.38 TCGA-VQ-A924-01 17 66864182 66864183 - A ABCA8 3'UTR 0.31 TCGA-VQ-A924-01 17 67260957 67260957 A - ABCA5 Frame_Shift_Del p.F1078Lfs*6 0.26 TCGA-VQ-A924-01 17 68128625 68128625 G T KCNJ16 Nonsense_Mutation p.G133* 0.26 TCGA-VQ-A924-01 17 70119910 70119910 G - SOX9 Frame_Shift_Del p.V306Cfs*77 0.25 TCGA-VQ-A924-01 17 7096997 7096997 G A DLG4 Missense_Mutation p.T570M 0.41 tolerated(0.25) benign(0.156) TCGA-VQ-A924-01 17 7192935 7192935 G A YBX2 Nonsense_Mutation p.R320* 0.22 TCGA-VQ-A924-01 17 7193636 7193637 - G YBX2 Frame_Shift_Ins p.P227Tfs*25 0.21 TCGA-VQ-A924-01 17 72305506 72305506 C T DNAI2 Silent p.C442C 0.22 TCGA-VQ-A924-01 17 73491063 73491063 C - KIAA0195 Frame_Shift_Del p.S895Pfs*13 0.22 TCGA-VQ-A924-01 17 73725372 73725373 - C ITGB4 Frame_Shift_Ins p.F201Lfs*15 0.22 TCGA-VQ-A924-01 17 73759466 73759466 C - GALK1 Frame_Shift_Del p.G137Vfs*27 0.33 TCGA-VQ-A924-01 17 73832653 73832653 C A UNC13D Missense_Mutation p.R433M 0.29 deleterious(0) probably_damaging(0.999) TCGA-VQ-A924-01 17 73897982 73897982 G A MRPL38 Silent p.A134A 0.28 TCGA-VQ-A924-01 17 74732993 74732993 C T SRSF2 Missense_Mutation p.E84K 0.29 tolerated(0.15) possibly_damaging(0.607) TCGA-VQ-A924-01 17 74936521 74936521 C - MGAT5B Frame_Shift_Del p.L552Wfs*71 0.24 TCGA-VQ-A924-01 17 76424615 76424615 G A DNAH17 Silent p.R4187R 0.33 TCGA-VQ-A924-01 17 7643779 7643779 A T DNAH2 Missense_Mutation p.N473I 0.05 possibly_damaging(0.654) TCGA-VQ-A924-01 17 7753244 7753244 C - KDM6B Frame_Shift_Del p.P1184Lfs*31 0.11 TCGA-VQ-A924-01 17 7756446 7756446 T C KDM6B Splice_Site p.X1579_splice 0.26 TCGA-VQ-A924-01 17 78078637 78078637 C - GAA Frame_Shift_Del p.N87Tfs*55 0.16 TCGA-VQ-A924-01 17 78327867 78327867 G A RNF213 Missense_Mutation p.A3543T 0.26 probably_damaging(1) TCGA-VQ-A924-01 17 79536091 79536091 G A NPLOC4 Missense_Mutation p.S467L 0.30 tolerated(0.21) benign(0.013) TCGA-VQ-A924-01 17 79620376 79620376 G T PDE6G 5'UTR 0.22 TCGA-VQ-A924-01 17 80012675 80012675 A G GPS1 Missense_Mutation p.N240D 0.28 deleterious(0.01) benign(0.38) TCGA-VQ-A924-01 17 80051543 80051543 C A FASN Missense_Mutation p.G129C 0.14 deleterious(0) probably_damaging(1) TCGA-VQ-A924-01 17 80726423 80726423 G A TBCD Missense_Mutation p.R188H 0.19 deleterious(0.01) benign(0.081) TCGA-VQ-A924-01 18 18535187 18535187 G A ROCK1 Missense_Mutation p.P1178S 0.19 tolerated(0.45) possibly_damaging(0.591) TCGA-VQ-A924-01 18 2946366 2946366 C T LPIN2 Intron 0.33 TCGA-VQ-A924-01 18 31319986 31319986 A - ASXL3 Frame_Shift_Del p.V876Cfs*59 0.31 TCGA-VQ-A924-01 18 3255823 3255823 G A MYL12A Silent p.L141L 0.23 TCGA-VQ-A924-01 18 3272906 3272906 A - MYL12B Frame_Shift_Del p.K5Rfs*36 0.26 TCGA-VQ-A924-01 18 42530091 42530091 G T SETBP1 Missense_Mutation p.K262N 0.09 deleterious(0) probably_damaging(0.997) TCGA-VQ-A924-01 18 42531485 42531485 G A SETBP1 Missense_Mutation p.R727Q 0.23 deleterious(0) probably_damaging(0.994) TCGA-VQ-A924-01 18 44407992 44407992 C A PIAS2 Nonsense_Mutation p.E480* 0.32 TCGA-VQ-A924-01 18 45567076 45567076 C - ZBTB7C Frame_Shift_Del p.E135Rfs*87 0.38 TCGA-VQ-A924-01 18 47788361 47788361 T G CCDC11 Missense_Mutation p.K100Q 0.28 deleterious(0.01) possibly_damaging(0.548) TCGA-VQ-A924-01 18 53254313 53254313 G A TCF4 Missense_Mutation p.T114M 0.20 deleterious(0.01) probably_damaging(0.996) TCGA-VQ-A924-01 18 5397303 5397303 G A EPB41L3 Silent p.H865H 0.21 TCGA-VQ-A924-01 18 54424248 54424248 C T WDR7 Silent p.H808H 0.17 TCGA-VQ-A924-01 18 55373760 55373760 T C ATP8B1 Missense_Mutation p.N81D 0.20 tolerated(0.16) benign(0.001) TCGA-VQ-A924-01 18 56587306 56587306 T - ZNF532 Frame_Shift_Del p.Y597Tfs*35 0.22 TCGA-VQ-A924-01 18 66503985 66503985 G T CCDC102B Splice_Site 0.34 TCGA-VQ-A924-01 18 66504454 66504454 G A CCDC102B Missense_Mutation p.A152T 0.27 tolerated(0.52) benign(0.022) TCGA-VQ-A924-01 18 67857916 67857916 G A RTTN Silent p.S349S 0.37 TCGA-VQ-A924-01 18 67992409 67992409 A G SOCS6 Missense_Mutation p.N169D 0.08 deleterious_low_confidence(0) possibly_damaging(0.772) TCGA-VQ-A924-01 18 6959377 6959377 C T LAMA1 Missense_Mutation p.G2581R 0.26 deleterious(0.03) probably_damaging(0.975) TCGA-VQ-A924-01 18 6986310 6986311 - T LAMA1 Frame_Shift_Ins p.N1735Kfs*26 0.24 TCGA-VQ-A924-01 18 7049157 7049157 G A LAMA1 Missense_Mutation p.R230C 0.33 deleterious(0) probably_damaging(0.992) TCGA-VQ-A924-01 18 74091824 74091824 G A ZNF516 Missense_Mutation p.T749M 0.26 tolerated(0.23) benign(0.013) TCGA-VQ-A924-01 18 74607118 74607118 G A ZNF236 Missense_Mutation p.V521M 0.29 deleterious(0) probably_damaging(0.998) TCGA-VQ-A924-01 18 77066987 77066987 T C ATP9B Missense_Mutation p.M509T 0.30 tolerated(0.59) benign(0) TCGA-VQ-A924-01 18 77246529 77246529 C T NFATC1 Nonsense_Mutation p.Q779* 0.24 TCGA-VQ-A924-01 18 77894240 77894240 C - ADNP2 Frame_Shift_Del p.P316Lfs*16 0.23 TCGA-VQ-A924-01 18 77895144 77895144 G A ADNP2 Silent p.T616T 0.28 TCGA-VQ-A924-01 18 77895517 77895517 T C ADNP2 Missense_Mutation p.W741R 0.35 tolerated(0.11) probably_damaging(0.977) TCGA-VQ-A924-01 18 9281209 9281209 T C ANKRD12 3'UTR 0.26 TCGA-VQ-A924-01 19 10248621 10248621 G A DNMT1 Missense_Mutation p.R1394W 0.15 deleterious(0) possibly_damaging(0.84) TCGA-VQ-A924-01 19 10688023 10688023 G A AP1M2 Nonsense_Mutation p.Q300* 0.21 TCGA-VQ-A924-01 19 1105716 1105716 T C GPX4 Silent p.D128D 0.27 TCGA-VQ-A924-01 19 1116883 1116883 G A SBNO2 Missense_Mutation p.R583W 0.31 deleterious(0.01) probably_damaging(0.973) TCGA-VQ-A924-01 19 11304645 11304645 G - KANK2 Frame_Shift_Del p.Y38Mfs*33 0.14 TCGA-VQ-A924-01 19 11312768 11312768 A G DOCK6 Missense_Mutation p.F1829L 0.30 tolerated(0.06) probably_damaging(0.925) TCGA-VQ-A924-01 19 11591505 11591505 G A ELAVL3 5'UTR 0.22 TCGA-VQ-A924-01 19 11651997 11651997 G A CNN1 Missense_Mutation p.G57D 0.17 deleterious(0) probably_damaging(0.993) TCGA-VQ-A924-01 19 11941183 11941183 G T ZNF440 Missense_Mutation p.R30M 0.23 deleterious(0) probably_damaging(0.951) TCGA-VQ-A924-01 19 11978811 11978811 T C ZNF439 Silent p.C309C 0.27 TCGA-VQ-A924-01 19 12996204 12996204 C T KLF1 Silent p.T280T 0.45 TCGA-VQ-A924-01 19 13323228 13323228 G A CACNA1A Silent p.T2053T 0.38 TCGA-VQ-A924-01 19 13879374 13879374 G T MRI1 Splice_Site p.X183_splice 0.27 TCGA-VQ-A924-01 19 14038730 14038730 G - CC2D1A Frame_Shift_Del p.R783Dfs*4 0.23 TCGA-VQ-A924-01 19 14083699 14083699 G A RFX1 Silent p.G390G 0.44 TCGA-VQ-A924-01 19 14523369 14523369 G C DDX39A Missense_Mutation p.N110K 0.30 tolerated(0.28) benign(0.112) TCGA-VQ-A924-01 19 14829275 14829275 C A ZNF333 Missense_Mutation p.S379Y 0.26 tolerated(0.09) possibly_damaging(0.689) TCGA-VQ-A924-01 19 15484629 15484629 G A AKAP8 Silent p.G113G 0.30 TCGA-VQ-A924-01 19 15547683 15547683 G A WIZ Missense_Mutation p.R155C 0.36 tolerated(0.05) possibly_damaging(0.646) TCGA-VQ-A924-01 19 15871667 15871667 T A LLNLR-249E10.1 RNA 0.26 TCGA-VQ-A924-01 19 17653097 17653097 A G FAM129C Silent p.A472A 0.29 TCGA-VQ-A924-01 19 17946834 17946834 G A JAK3 Silent p.L605L 0.14 TCGA-VQ-A924-01 19 18173080 18173080 C A IL12RB1 Missense_Mutation p.Q542H 0.29 deleterious(0.01) possibly_damaging(0.885) TCGA-VQ-A924-01 19 18234043 18234043 G A MAST3 Missense_Mutation p.R110Q 0.24 tolerated(1) benign(0.016) TCGA-VQ-A924-01 19 18256583 18256583 G A MAST3 Missense_Mutation p.A995T 0.26 deleterious(0) probably_damaging(1) TCGA-VQ-A924-01 19 18652647 18652658 TCCTCCTCTTCC - FKBP8 In_Frame_Del p.E43_E46del 0.28 TCGA-VQ-A924-01 19 19359603 19359603 C T NCAN Silent p.C1244C 0.32 TCGA-VQ-A924-01 19 1986835 1986835 C T BTBD2 Silent p.T470T 0.31 TCGA-VQ-A924-01 19 22154406 22154406 C G ZNF208 Missense_Mutation p.E1144Q 0.17 tolerated(0.36) possibly_damaging(0.879) TCGA-VQ-A924-01 19 2226586 2226586 C T DOT1L Nonsense_Mutation p.Q1356* 0.36 TCGA-VQ-A924-01 19 2246750 2246750 A G SF3A2 Splice_Site p.X119_splice 0.27 TCGA-VQ-A924-01 19 22575608 22575608 G T ZNF98 Missense_Mutation p.N143K 0.29 tolerated(0.07) benign(0.034) TCGA-VQ-A924-01 19 23299950 23299950 C T ZNF730 5'UTR 0.33 TCGA-VQ-A924-01 19 2338759 2338759 G - SPPL2B RNA 0.18 TCGA-VQ-A924-01 19 24309750 24309750 T C ZNF254 Silent p.H316H 0.27 TCGA-VQ-A924-01 19 30106226 30106226 A G POP4 Missense_Mutation p.Q201R 0.15 tolerated(0.59) benign(0.012) TCGA-VQ-A924-01 19 33078145 33078145 A G PDCD5 Intron 0.22 TCGA-VQ-A924-01 19 35512753 35512753 G A GRAMD1A Missense_Mutation p.G580S 0.39 tolerated(0.74) benign(0.001) TCGA-VQ-A924-01 19 35850448 35850448 G A FFAR3 Missense_Mutation p.R219Q 0.23 deleterious(0.01) possibly_damaging(0.769) TCGA-VQ-A924-01 19 35940921 35940921 G A FFAR2 Missense_Mutation p.G102D 0.50 deleterious(0) possibly_damaging(0.838) TCGA-VQ-A924-01 19 35981321 35981321 G A KRTDAP Silent p.A8A 0.21 TCGA-VQ-A924-01 19 36047926 36047926 G T ATP4A Silent p.A586A 0.24 TCGA-VQ-A924-01 19 36210764 36210764 C - KMT2B Frame_Shift_Del p.P174Qfs*20 0.28 TCGA-VQ-A924-01 19 36217162 36217163 AG - KMT2B Frame_Shift_Del p.S1305Lfs*28 0.33 TCGA-VQ-A924-01 19 36218689 36218689 G A KMT2B Splice_Site p.X1464_splice 0.25 TCGA-VQ-A924-01 19 3623965 3623965 T C CACTIN Silent p.P121P 0.43 TCGA-VQ-A924-01 19 36594875 36594875 C T WDR62 Missense_Mutation p.P1382L 0.14 tolerated(0.12) benign(0.014) TCGA-VQ-A924-01 19 3664892 3664892 C T PIP5K1C Silent p.Q49Q 0.18 TCGA-VQ-A924-01 19 37118522 37118522 G A ZNF382 3'UTR 0.29 TCGA-VQ-A924-01 19 37382338 37382338 C G ZNF829 3'UTR 0.38 TCGA-VQ-A924-01 19 3754074 3754074 C T APBA3 Silent p.T264T 0.17 TCGA-VQ-A924-01 19 38817564 38817564 C T KCNK6 Silent p.G218G 0.34 TCGA-VQ-A924-01 19 38964047 38964047 C - RYR1 Frame_Shift_Del p.C1268Afs*4 0.27 TCGA-VQ-A924-01 19 39406188 39406188 G A SARS2 3'Flank 0.26 TCGA-VQ-A924-01 19 40901006 40901006 C - PRX Frame_Shift_Del p.E1085Kfs*42 0.21 TCGA-VQ-A924-01 19 4099312 4099312 G - MAP2K2 Frame_Shift_Del p.P269Rfs*58 0.24 TCGA-VQ-A924-01 19 41123025 41123025 C T LTBP4 Silent p.N1055N 0.21 TCGA-VQ-A924-01 19 41281699 41281699 C A MIA Missense_Mutation p.P57H 0.06 deleterious(0) probably_damaging(1) TCGA-VQ-A924-01 19 41306804 41306804 C A EGLN2 Silent p.A109A 0.33 TCGA-VQ-A924-01 19 42399497 42399497 G T ARHGEF1 Missense_Mutation p.G333V 0.30 deleterious(0.02) probably_damaging(0.961) TCGA-VQ-A924-01 19 42795609 42795609 C - CIC Frame_Shift_Del p.A900Pfs*24 0.23 TCGA-VQ-A924-01 19 42799090 42799090 C T CIC Missense_Mutation p.T1525M 0.06 possibly_damaging(0.535) TCGA-VQ-A924-01 19 42912245 42912245 G A LIPE Silent p.S513S 0.29 TCGA-VQ-A924-01 19 43979503 43979503 C A PHLDB3 3'UTR 0.18 TCGA-VQ-A924-01 19 44417868 44417868 G A ZNF45 Missense_Mutation p.H574Y 0.23 deleterious(0) probably_damaging(0.998) TCGA-VQ-A924-01 19 44471306 44471306 T C ZNF221 Missense_Mutation p.M551T 0.30 tolerated(0.59) benign(0.004) TCGA-VQ-A924-01 19 45285718 45285718 G A CBLC Missense_Mutation p.R250H 0.29 deleterious(0.03) benign(0.063) TCGA-VQ-A924-01 19 45322983 45322983 C T BCAM Missense_Mutation p.P588L 0.42 deleterious(0.02) probably_damaging(0.963) TCGA-VQ-A924-01 19 45496263 45496263 G T CLPTM1 3'UTR 0.62 TCGA-VQ-A924-01 19 45535922 45535922 C A RELB Silent p.P374P 0.50 TCGA-VQ-A924-01 19 46519595 46519595 C T CCDC61 Silent p.F345F 0.36 TCGA-VQ-A924-01 19 46800361 46800361 T C HIF3A Splice_Site p.X9_splice 0.29 TCGA-VQ-A924-01 19 4816247 4816247 G A TICAM1 3'UTR 0.27 TCGA-VQ-A924-01 19 48244552 48244552 G T EHD2 Missense_Mutation p.G499C 0.27 deleterious(0) probably_damaging(1) TCGA-VQ-A924-01 19 49224207 49224207 G - RASIP1 Frame_Shift_Del p.L914Wfs*12 0.24 TCGA-VQ-A924-01 19 49657367 49657367 C T HRC Silent p.E376E 0.29 TCGA-VQ-A924-01 19 49661514 49661514 G - TRPM4 Frame_Shift_Del 0.12 TCGA-VQ-A924-01 19 49894125 49894125 G A CCDC155 5'UTR 0.34 TCGA-VQ-A924-01 19 50191469 50191469 G T PRMT1 Missense_Mutation p.E361D 0.22 tolerated(0.11) benign(0.001) TCGA-VQ-A924-01 19 50363527 50363527 G - PTOV1 Frame_Shift_Del p.*417Sfs*14 0.41 TCGA-VQ-A924-01 19 51648175 51648175 C A SIGLEC7 Missense_Mutation p.P240H 0.26 deleterious(0) probably_damaging(0.997) TCGA-VQ-A924-01 19 51918605 51918605 G - SIGLEC10 Frame_Shift_Del p.P387Qfs*4 0.15 TCGA-VQ-A924-01 19 52002445 52002445 C A SIGLEC12 Missense_Mutation p.V372F 0.24 deleterious(0) probably_damaging(0.945) TCGA-VQ-A924-01 19 52129297 52129297 A G SIGLEC5 Silent p.G484G 0.21 TCGA-VQ-A924-01 19 52149129 52149129 G - SIGLEC14 Frame_Shift_Del p.R203Gfs*13 0.56 TCGA-VQ-A924-01 19 52519289 52519289 G A ZNF614 Missense_Mutation p.T521I 0.26 tolerated(0.23) possibly_damaging(0.61) TCGA-VQ-A924-01 19 52619838 52619838 G T ZNF616 Silent p.A193A 0.18 TCGA-VQ-A924-01 19 53015344 53015344 T C ZNF578 Silent p.N570N 0.21 TCGA-VQ-A924-01 19 53117320 53117320 C T ZNF83 Silent p.Q166Q 0.24 TCGA-VQ-A924-01 19 53854539 53854539 A - ZNF845 Frame_Shift_Del p.K205Sfs*6 0.20 TCGA-VQ-A924-01 19 53958310 53958310 G A ZNF761 RNA 0.14 TCGA-VQ-A924-01 19 54314105 54314105 T C NLRP12 Missense_Mutation p.S270G 0.26 tolerated(0.17) benign(0.001) TCGA-VQ-A924-01 19 54656196 54656196 G A CNOT3 Silent p.P579P 0.32 TCGA-VQ-A924-01 19 54726305 54726305 T C LILRB3 Missense_Mutation p.E67G 0.15 tolerated(0.33) benign(0.266) TCGA-VQ-A924-01 19 54746057 54746057 T C LILRA6 Missense_Mutation p.E67G 0.06 tolerated(0.33) benign(0.028) TCGA-VQ-A924-01 19 54965770 54965770 G A LENG8 Silent p.A196A 0.37 TCGA-VQ-A924-01 19 57175321 57175321 G A ZNF835 Missense_Mutation p.R416W 0.31 deleterious(0) probably_damaging(0.957) TCGA-VQ-A924-01 19 57641106 57641106 A - USP29 Frame_Shift_Del p.V357Sfs*21 0.27 TCGA-VQ-A924-01 19 5789320 5789320 G A DUS3L Silent p.P266P 0.33 TCGA-VQ-A924-01 19 58863880 58863880 A G A1BG Missense_Mutation p.W128R 0.26 deleterious(0) probably_damaging(0.999) TCGA-VQ-A924-01 19 58982826 58982826 C T ZNF324 Missense_Mutation p.R323W 0.19 deleterious(0.02) probably_damaging(1) TCGA-VQ-A924-01 19 59028221 59028221 G A ZBTB45 Missense_Mutation p.R274W 0.28 deleterious(0.01) possibly_damaging(0.72) TCGA-VQ-A924-01 19 5957965 5957965 C T RANBP3 Silent p.P14P 0.21 TCGA-VQ-A924-01 19 6458260 6458260 G A SLC25A23 Missense_Mutation p.R78W 0.35 deleterious(0) probably_damaging(0.927) TCGA-VQ-A924-01 19 6697481 6697481 G - C3 Frame_Shift_Del p.K891Sfs*13 0.29 TCGA-VQ-A924-01 19 7743430 7743430 G A CTD-3214H19.16 Missense_Mutation p.V16I 0.12 tolerated_low_confidence(0.34) benign(0.009) TCGA-VQ-A924-01 19 7976149 7976149 C - MAP2K7 Frame_Shift_Del p.P292Qfs*119 0.27 TCGA-VQ-A924-01 19 891002 891002 G T MED16 Missense_Mutation p.L44I 0.29 tolerated(0.49) benign(0.364) TCGA-VQ-A924-01 19 9071306 9071307 - A MUC16 Frame_Shift_Ins p.L5380Ffs*22 0.25 TCGA-VQ-A924-01 19 9072195 9072195 C T MUC16 Missense_Mutation p.R5084H 0.21 unknown(0) TCGA-VQ-A924-01 19 964870 964870 C T ARID3A Missense_Mutation p.R330W 0.31 deleterious(0) probably_damaging(0.993) TCGA-VQ-A924-01 1 10132189 10132189 C T UBE4B Missense_Mutation p.A43V 0.16 tolerated(0.2) possibly_damaging(0.499) TCGA-VQ-A924-01 1 10473289 10473289 C T PGD Silent p.G275G 0.21 TCGA-VQ-A924-01 1 107979316 107979316 C T NTNG1 Missense_Mutation p.H429Y 0.24 tolerated(0.3) benign(0) TCGA-VQ-A924-01 1 109276023 109276023 G A FNDC7 Missense_Mutation p.C670Y 0.26 deleterious(0) probably_damaging(0.999) TCGA-VQ-A924-01 1 109777988 109777988 C T SARS Missense_Mutation p.R302C 0.19 deleterious(0) probably_damaging(1) TCGA-VQ-A924-01 1 109944564 109944564 G A PSMA5 3'UTR 0.19 TCGA-VQ-A924-01 1 110921728 110921728 A G SLC16A4 Silent p.S259S 0.23 TCGA-VQ-A924-01 1 111216819 111216819 G A KCNA3 Missense_Mutation p.R205W 0.32 deleterious(0) possibly_damaging(0.772) TCGA-VQ-A924-01 1 111506330 111506330 A T LRIF1 5'UTR 0.25 TCGA-VQ-A924-01 1 111737242 111737242 G A DENND2D Missense_Mutation p.A251V 0.29 tolerated(0.14) benign(0.181) TCGA-VQ-A924-01 1 111964049 111964050 - C OVGP1 Frame_Shift_Ins p.A251Gfs*24 0.26 TCGA-VQ-A924-01 1 113252867 113252867 C T PPM1J Missense_Mutation p.R479H 0.32 deleterious(0.01) probably_damaging(0.964) TCGA-VQ-A924-01 1 113643084 113643084 T - LRIG2 Frame_Shift_Del p.S431Lfs*5 0.25 TCGA-VQ-A924-01 1 117078662 117078662 T - CD58 Frame_Shift_Del p.I185Yfs*18 0.14 TCGA-VQ-A924-01 1 11718855 11718855 C T FBXO44 Missense_Mutation p.A184V 0.27 deleterious(0.03) benign(0.031) TCGA-VQ-A924-01 1 117663624 117663624 C - TRIM45 Frame_Shift_Del p.G67Efs*42 0.23 TCGA-VQ-A924-01 1 1190736 1190736 C T UBE2J2 Silent p.A225A 0.36 TCGA-VQ-A924-01 1 120277978 120277978 C T PHGDH Missense_Mutation p.A235V 0.28 deleterious(0.02) probably_damaging(0.986) TCGA-VQ-A924-01 1 12082431 12082431 G T MIIP Missense_Mutation p.G132C 0.35 tolerated(0.08) benign(0.087) TCGA-VQ-A924-01 1 1262620 1262620 G T GLTPD1 Splice_Site p.X41_splice 0.20 TCGA-VQ-A924-01 1 12835246 12835246 G A PRAMEF12 Missense_Mutation p.R79Q 0.27 tolerated(1) benign(0) TCGA-VQ-A924-01 1 144864221 144864221 C A PDE4DIP Missense_Mutation p.Q1958H 0.08 deleterious(0) possibly_damaging(0.888) TCGA-VQ-A924-01 1 145273291 145273291 G A NOTCH2NL Missense_Mutation p.A49T 0.04 tolerated(0.38) probably_damaging(0.999) TCGA-VQ-A924-01 1 149882414 149882414 C T SV2A Missense_Mutation p.A307T 0.29 deleterious(0) probably_damaging(1) TCGA-VQ-A924-01 1 150443887 150443887 C A RPRD2 Missense_Mutation p.F821L 0.28 deleterious_low_confidence(0.02) benign(0.009) TCGA-VQ-A924-01 1 150470123 150470123 C - TARS2 Frame_Shift_Del p.P381Qfs*27 0.22 TCGA-VQ-A924-01 1 151108082 151108082 G A SEMA6C Missense_Mutation p.A473V 0.27 tolerated(1) possibly_damaging(0.682) TCGA-VQ-A924-01 1 151774033 151774033 G - LINGO4 Frame_Shift_Del p.P383Lfs*14 0.31 TCGA-VQ-A924-01 1 152083695 152083695 C A TCHH Missense_Mutation p.E666D 0.25 unknown(0) TCGA-VQ-A924-01 1 152671600 152671600 C T LCE2A Missense_Mutation p.R75C 0.27 deleterious(0.05) unknown(0) TCGA-VQ-A924-01 1 152733456 152733456 G A KPRP Silent p.L464L 0.30 TCGA-VQ-A924-01 1 15392321 15392321 C T KAZN Intron 0.19 TCGA-VQ-A924-01 1 154300631 154300632 - A ATP8B2 Frame_Shift_Ins p.R41Afs*12 0.33 TCGA-VQ-A924-01 1 154524283 154524283 G A UBE2Q1 Silent p.G346G 0.26 TCGA-VQ-A924-01 1 155148493 155148493 C - TRIM46 Frame_Shift_Del p.L153Wfs*12 0.25 TCGA-VQ-A924-01 1 155162054 155162054 C T MUC1 Missense_Mutation p.A27T 0.34 tolerated_low_confidence(0.55) possibly_damaging(0.827) TCGA-VQ-A924-01 1 155217887 155217887 C T FAM189B Missense_Mutation p.R596K 0.11 tolerated(1) benign(0.001) TCGA-VQ-A924-01 1 155233071 155233071 C T CLK2 Missense_Mutation p.A479T 0.24 tolerated(0.61) benign(0.016) TCGA-VQ-A924-01 1 155891421 155891421 T C KIAA0907 Splice_Site p.X338_splice 0.37 TCGA-VQ-A924-01 1 156006836 156006836 G A UBQLN4 Missense_Mutation p.A580V 0.06 deleterious(0) probably_damaging(1) TCGA-VQ-A924-01 1 156911756 156911756 C - ARHGEF11 Frame_Shift_Del p.V1118Cfs*35 0.16 TCGA-VQ-A924-01 1 158300668 158300668 A G CD1B Silent p.A82A 0.29 TCGA-VQ-A924-01 1 158576923 158576923 A C OR10Z1 Missense_Mutation p.E232A 0.22 tolerated(0.15) benign(0.004) TCGA-VQ-A924-01 1 158614069 158614069 C T SPTA1 Missense_Mutation p.D1438N 0.33 tolerated(0.06) probably_damaging(0.92) TCGA-VQ-A924-01 1 159897580 159897580 G A IGSF9 Missense_Mutation p.R1110W 0.28 deleterious_low_confidence(0.02) possibly_damaging(0.677) TCGA-VQ-A924-01 1 159923106 159923106 A G SLAMF9 Silent p.C128C 0.35 TCGA-VQ-A924-01 1 161088595 161088597 CCT - NIT1 In_Frame_Del p.P9del 0.24 TCGA-VQ-A924-01 1 161276536 161276536 C T MPZ Missense_Mutation p.G137D 0.32 deleterious(0.03) probably_damaging(0.999) TCGA-VQ-A924-01 1 16257928 16257928 G A SPEN Silent p.L1731L 0.27 TCGA-VQ-A924-01 1 16355324 16355324 A G CLCNKA Missense_Mutation p.H346R 0.21 tolerated(0.44) benign(0.002) TCGA-VQ-A924-01 1 16918668 16918668 T C NBPF1 5'UTR 0.13 TCGA-VQ-A924-01 1 169798423 169798423 G A C1orf112 Missense_Mutation p.V383I 0.23 tolerated(1) benign(0.002) TCGA-VQ-A924-01 1 171605449 171605449 C T MYOC Silent p.T377T 0.32 TCGA-VQ-A924-01 1 172017885 172017885 A - DNM3 Frame_Shift_Del p.K445Nfs*34 0.24 TCGA-VQ-A924-01 1 172437669 172437669 C A C1orf105 Missense_Mutation p.L163I 0.33 tolerated(0.06) possibly_damaging(0.567) TCGA-VQ-A924-01 1 174219702 174219702 C A RABGAP1L Silent p.P269P 0.27 TCGA-VQ-A924-01 1 175087707 175087707 C - TNN Frame_Shift_Del p.Q801Kfs*8 0.23 TCGA-VQ-A924-01 1 17634744 17634744 G T PADI4 Silent p.V9V 0.32 TCGA-VQ-A924-01 1 176659561 176659561 A G PAPPA2 Missense_Mutation p.Y809C 0.32 deleterious(0) probably_damaging(0.999) TCGA-VQ-A924-01 1 182026307 182026307 G A ZNF648 Missense_Mutation p.A280V 0.29 tolerated(0.45) benign(0.015) TCGA-VQ-A924-01 1 182847298 182847298 C T DHX9 Missense_Mutation p.R781C 0.23 deleterious(0.02) benign(0.13) TCGA-VQ-A924-01 1 182856258 182856258 G A DHX9 Missense_Mutation p.D1168N 0.20 tolerated(0.23) possibly_damaging(0.632) TCGA-VQ-A924-01 1 184686044 184686044 G A EDEM3 Missense_Mutation p.R450C 0.24 deleterious(0) probably_damaging(0.996) TCGA-VQ-A924-01 1 186034484 186034484 C A HMCN1 Missense_Mutation p.P2543Q 0.39 benign(0.405) TCGA-VQ-A924-01 1 186105940 186105940 C T HMCN1 Missense_Mutation p.R4485W 0.35 probably_damaging(0.999) TCGA-VQ-A924-01 1 186280219 186280219 A G PRG4 Missense_Mutation p.I1185V 0.24 unknown(0) TCGA-VQ-A924-01 1 18809172 18809172 C T KLHDC7A Missense_Mutation p.T566M 0.29 deleterious(0) probably_damaging(1) TCGA-VQ-A924-01 1 19440439 19440439 C A UBR4 Missense_Mutation p.Q3776H 0.25 probably_damaging(0.948) TCGA-VQ-A924-01 1 196857331 196857331 T C CFHR4 Silent p.N17N 0.15 TCGA-VQ-A924-01 1 197326025 197326026 - G CRB1 Frame_Shift_Ins p.E353Gfs*25 0.30 TCGA-VQ-A924-01 1 201183360 201183360 G A IGFN1 Silent p.E2928E 0.38 TCGA-VQ-A924-01 1 201352314 201352314 C T LAD1 Missense_Mutation p.G425D 0.23 deleterious(0.01) probably_damaging(0.946) TCGA-VQ-A924-01 1 201355513 201355513 C - LAD1 Frame_Shift_Del p.A326Lfs*18 0.28 TCGA-VQ-A924-01 1 202549734 202549734 C - PPP1R12B 3'UTR 0.22 TCGA-VQ-A924-01 1 202746170 202746170 C T KDM5B Missense_Mutation p.R86H 0.24 deleterious(0.01) probably_damaging(0.954) TCGA-VQ-A924-01 1 203472741 203472741 C T OPTC Missense_Mutation p.R298C 0.20 deleterious(0.02) probably_damaging(0.998) TCGA-VQ-A924-01 1 204170836 204170836 C - GOLT1A Frame_Shift_Del p.G74Vfs*64 0.27 TCGA-VQ-A924-01 1 20440641 20440641 C T PLA2G2D Missense_Mutation p.R135Q 0.28 tolerated(0.1) benign(0.24) TCGA-VQ-A924-01 1 204588917 204588917 G - LRRN2 Frame_Shift_Del p.A69Qfs*52 0.17 TCGA-VQ-A924-01 1 204924033 204924033 C - NFASC Frame_Shift_Del p.P165Rfs*12 0.23 TCGA-VQ-A924-01 1 204938012 204938012 G A NFASC Missense_Mutation p.R302H 0.28 tolerated(0.08) possibly_damaging(0.483) TCGA-VQ-A924-01 1 207647156 207647156 G A CR2 Silent p.Q722Q 0.07 TCGA-VQ-A924-01 1 208202430 208202430 G A PLXNA2 Intron 0.32 TCGA-VQ-A924-01 1 21268410 21268410 T C EIF4G3 Missense_Mutation p.N363D 0.34 tolerated_low_confidence(0.13) benign(0.012) TCGA-VQ-A924-01 1 214816013 214816013 C T CENPF Silent p.A1444A 0.33 TCGA-VQ-A924-01 1 215747171 215747171 T - KCTD3 Frame_Shift_Del p.S45Pfs*4 0.24 TCGA-VQ-A924-01 1 221053370 221053370 G - HLX Frame_Shift_Del p.A59Rfs*138 0.43 TCGA-VQ-A924-01 1 221054633 221054633 T C HLX Silent p.I230I 0.30 TCGA-VQ-A924-01 1 223283695 223283695 A - TLR5 3'UTR 0.48 TCGA-VQ-A924-01 1 224514116 224514116 C T NVL Silent p.A36A 0.25 TCGA-VQ-A924-01 1 225707116 225707117 - TC ENAH Frame_Shift_Ins p.Q196Dfs*57 0.25 TCGA-VQ-A924-01 1 228295521 228295521 G T MRPL55 Missense_Mutation p.L62M 0.24 deleterious(0.01) probably_damaging(0.998) TCGA-VQ-A924-01 1 228547531 228547531 C A OBSCN Intron 0.46 TCGA-VQ-A924-01 1 228562292 228562292 C - OBSCN Frame_Shift_Del p.L8460Wfs*19 0.26 TCGA-VQ-A924-01 1 228612992 228612992 G A HIST3H3 Missense_Mutation p.T12M 0.29 deleterious_low_confidence(0) benign(0.426) TCGA-VQ-A924-01 1 229730038 229730038 A - TAF5L 3'UTR 0.25 TCGA-VQ-A924-01 1 229781685 229781685 G A URB2 Missense_Mutation p.R1292H 0.27 tolerated(0.36) possibly_damaging(0.616) TCGA-VQ-A924-01 1 230839055 230839055 A - AGT Frame_Shift_Del p.F430Lfs*25 0.49 TCGA-VQ-A924-01 1 230845966 230845966 C T AGT Missense_Mutation p.V211M 0.28 deleterious(0.02) benign(0.034) TCGA-VQ-A924-01 1 232942211 232942211 A - MAP10 Frame_Shift_Del p.K483Sfs*3 0.16 TCGA-VQ-A924-01 1 233489583 233489583 C T MLK4 Silent p.T339T 0.29 TCGA-VQ-A924-01 1 23520569 23520569 G A HTR1D Silent p.I48I 0.31 TCGA-VQ-A924-01 1 236646049 236646049 C T EDARADD 3'Flank 0.37 TCGA-VQ-A924-01 1 237604732 237604732 T G RYR2 Silent p.T373T 0.32 TCGA-VQ-A924-01 1 24078212 24078212 G T TCEB3 Nonsense_Mutation p.E399* 0.22 TCGA-VQ-A924-01 1 244816526 244816526 C - DESI2 5'UTR 0.35 TCGA-VQ-A924-01 1 247024362 247024362 G A AHCTF1 Missense_Mutation p.A1333V 0.27 deleterious(0) possibly_damaging(0.901) TCGA-VQ-A924-01 1 248403050 248403050 G C OR2M4 Missense_Mutation p.V274L 0.24 deleterious(0.03) possibly_damaging(0.777) TCGA-VQ-A924-01 1 248512384 248512384 T - OR14C36 Frame_Shift_Del p.F105Lfs*28 0.28 TCGA-VQ-A924-01 1 26610666 26610666 A G UBXN11 Silent p.I348I 0.23 TCGA-VQ-A924-01 1 26694151 26694156 CAGGTT - ZNF683 In_Frame_Del p.N83_L84del 0.29 TCGA-VQ-A924-01 1 27088709 27088709 C T ARID1A Missense_Mutation p.P773L 0.27 unknown(0) TCGA-VQ-A924-01 1 27099103 27099103 C - ARID1A Frame_Shift_Del p.P1175Hfs*5 0.21 TCGA-VQ-A924-01 1 27106804 27106804 C - ARID1A Frame_Shift_Del p.F2141Sfs*59 0.23 TCGA-VQ-A924-01 1 28285292 28285293 - C SMPDL3B Frame_Shift_Ins p.Q439Pfs*30 0.17 TCGA-VQ-A924-01 1 29359670 29359670 G A EPB41 Silent p.K426K 0.26 TCGA-VQ-A924-01 1 3102981 3102981 G T PRDM16 Silent p.L110L 0.24 TCGA-VQ-A924-01 1 32259447 32259447 C T SPOCD1 Missense_Mutation p.C812Y 0.25 tolerated(0.32) benign(0.009) TCGA-VQ-A924-01 1 32740607 32740607 C T LCK Silent p.I67I 0.17 TCGA-VQ-A924-01 1 33233540 33233540 C A KIAA1522 Missense_Mutation p.R130S 0.28 deleterious(0) unknown(0) TCGA-VQ-A924-01 1 34330001 34330001 G A HMGB4 Missense_Mutation p.R70Q 0.28 tolerated(0.05) possibly_damaging(0.744) TCGA-VQ-A924-01 1 35873722 35873722 C T ZMYM4 Missense_Mutation p.P1304S 0.24 tolerated(0.05) possibly_damaging(0.449) TCGA-VQ-A924-01 1 36030971 36030971 C T NCDN Silent p.L633L 0.24 TCGA-VQ-A924-01 1 36214071 36214071 C A CLSPN Missense_Mutation p.A803S 0.26 tolerated(0.08) benign(0.09) TCGA-VQ-A924-01 1 3699238 3699238 C T LRRC47 Missense_Mutation p.S467N 0.31 deleterious(0) probably_damaging(0.968) TCGA-VQ-A924-01 1 37948478 37948478 C T ZC3H12A Missense_Mutation p.R356W 0.25 tolerated(0.07) benign(0.394) TCGA-VQ-A924-01 1 38463042 38463042 G A FHL3 3'UTR 0.26 TCGA-VQ-A924-01 1 39305167 39305167 G A RRAGC 3'UTR 0.23 TCGA-VQ-A924-01 1 43396727 43396727 G A SLC2A1 Missense_Mutation p.R89C 0.32 deleterious(0.01) probably_damaging(1) TCGA-VQ-A924-01 1 43917421 43917421 G A SZT2 3'UTR 0.29 TCGA-VQ-A924-01 1 44086175 44086175 C T PTPRF Silent p.Y1763Y 0.25 TCGA-VQ-A924-01 1 4771993 4771993 C T AJAP1 Silent p.L21L 0.32 TCGA-VQ-A924-01 1 51049376 51049376 C T FAF1 Missense_Mutation p.A327T 0.33 tolerated(0.12) benign(0.078) TCGA-VQ-A924-01 1 51253744 51253744 G A FAF1 Missense_Mutation p.R99W 0.24 deleterious(0) probably_damaging(0.995) TCGA-VQ-A924-01 1 52255080 52255080 A G NRD1 Missense_Mutation p.L1163P 0.18 tolerated(0.26) benign(0.002) TCGA-VQ-A924-01 1 52306090 52306090 T C NRD1 Silent p.E146E 0.28 TCGA-VQ-A924-01 1 52819165 52819165 T A CC2D1B 3'UTR 0.38 TCGA-VQ-A924-01 1 52991652 52991653 - T ZCCHC11 Frame_Shift_Ins p.F101Ifs*3 0.22 TCGA-VQ-A924-01 1 53373586 53373586 C T ECHDC2 Silent p.E106E 0.22 TCGA-VQ-A924-01 1 53925145 53925145 C T DMRTB1 Missense_Mutation p.R7C 0.08 deleterious(0) probably_damaging(0.979) TCGA-VQ-A924-01 1 54337066 54337066 A G YIPF1 Missense_Mutation p.Y154H 0.28 deleterious(0.02) benign(0.443) TCGA-VQ-A924-01 1 56990158 56990158 G A PPAP2B Silent p.Y122Y 0.25 TCGA-VQ-A924-01 1 60312791 60312791 G T HOOK1 Missense_Mutation p.R288M 0.19 deleterious(0) probably_damaging(0.959) TCGA-VQ-A924-01 1 64643888 64643888 T C ROR1 Missense_Mutation p.Y722H 0.26 deleterious(0.03) probably_damaging(0.921) TCGA-VQ-A924-01 1 67390426 67390426 T - WDR78 Frame_Shift_Del p.K30Rfs*28 0.28 TCGA-VQ-A924-01 1 71873163 71873163 C A NEGR1 Missense_Mutation p.S344I 0.20 tolerated(0.07) possibly_damaging(0.605) TCGA-VQ-A924-01 1 74492586 74492587 - T LRRIQ3 Frame_Shift_Ins p.A596Sfs*3 0.27 TCGA-VQ-A924-01 1 76387913 76387913 G - ASB17 Frame_Shift_Del p.P178Lfs*6 0.15 TCGA-VQ-A924-01 1 7798492 7798492 C T CAMTA1 Missense_Mutation p.R1378C 0.18 deleterious(0) possibly_damaging(0.794) TCGA-VQ-A924-01 1 79093646 79093646 C T IFI44L Missense_Mutation p.R16C 0.20 deleterious(0) possibly_damaging(0.747) TCGA-VQ-A924-01 1 8419947 8419947 C A RERE Missense_Mutation p.E1165D 0.23 unknown(0) TCGA-VQ-A924-01 1 9009479 9009479 C A CA6 Silent p.P79P 0.24 TCGA-VQ-A924-01 1 9063381 9063381 G T SLC2A7 Missense_Mutation p.P506H 0.20 deleterious(0.04) benign(0.415) TCGA-VQ-A924-01 1 94337639 94337640 - G DNTTIP2 Frame_Shift_Ins p.K686Qfs*10 0.09 TCGA-VQ-A924-01 1 94461682 94461682 C T ABCA4 Missense_Mutation p.A2267T 0.27 deleterious(0.01) benign(0.394) TCGA-VQ-A924-01 1 9790704 9790704 G A CLSTN1 Silent p.S936S 0.31 TCGA-VQ-A924-01 1 98157299 98157299 C A DPYD Nonsense_Mutation p.E246* 0.29 TCGA-VQ-A924-01 20 17595449 17595449 G A RRBP1 Missense_Mutation p.T943M 0.17 deleterious(0.03) benign(0) TCGA-VQ-A924-01 20 20621450 20621450 C T RALGAPA2 Missense_Mutation p.V149I 0.31 tolerated(0.32) benign(0.003) TCGA-VQ-A924-01 20 21689980 21689980 C T PAX1 Missense_Mutation p.P394S 0.26 tolerated_low_confidence(0.06) probably_damaging(0.909) TCGA-VQ-A924-01 20 23029065 23029065 G A THBD Silent p.D359D 0.38 TCGA-VQ-A924-01 20 24940498 24940498 A G CST7 3'UTR 0.31 TCGA-VQ-A924-01 20 29891223 29891223 C T DEFB116 Missense_Mutation p.R34Q 0.19 tolerated(1) benign(0.001) TCGA-VQ-A924-01 20 29960671 29960672 - A DEFB118 Frame_Shift_Ins p.C27Mfs*34 0.29 TCGA-VQ-A924-01 20 30667627 30667627 C T HCK Missense_Mutation p.A160V 0.31 tolerated(0.06) benign(0.208) TCGA-VQ-A924-01 20 30742943 30742943 G A TM9SF4 Missense_Mutation p.C428Y 0.28 tolerated(0.28) benign(0.141) TCGA-VQ-A924-01 20 32232434 32232434 C T CBFA2T2 Silent p.I599I 0.30 TCGA-VQ-A924-01 20 33609104 33609104 C T TRPC4AP Silent p.T369T 0.42 TCGA-VQ-A924-01 20 34776410 34776410 C T EPB41L1 Missense_Mutation p.R339W 0.38 deleterious(0) probably_damaging(1) TCGA-VQ-A924-01 20 3766911 3766911 A G CENPB Missense_Mutation p.Y74H 0.24 tolerated(0.35) unknown(0) TCGA-VQ-A924-01 20 39795201 39795201 C T PLCG1 Missense_Mutation p.R696W 0.34 deleterious(0) probably_damaging(1) TCGA-VQ-A924-01 20 39797439 39797439 C A PLCG1 Silent p.A804A 0.25 TCGA-VQ-A924-01 20 40739003 40739003 G - PTPRT Frame_Shift_Del p.P1075Rfs*6 0.21 TCGA-VQ-A924-01 20 43030019 43030020 CT - HNF4A Frame_Shift_Del p.S4Qfs*25 0.17 TCGA-VQ-A924-01 20 43109061 43109061 G A TTPAL Missense_Mutation p.C141Y 0.28 tolerated(0.07) probably_damaging(0.917) TCGA-VQ-A924-01 20 43150559 43150559 T C SERINC3 Missense_Mutation p.S12G 0.29 deleterious(0.03) possibly_damaging(0.89) TCGA-VQ-A924-01 20 45867595 45867595 G A ZMYND8 Intron 0.18 TCGA-VQ-A924-01 20 47682791 47682791 G T CSE1L Silent p.V97V 0.28 TCGA-VQ-A924-01 20 4848428 4848429 - A SLC23A2 Frame_Shift_Ins p.L448Ffs*58 0.20 TCGA-VQ-A924-01 20 50701723 50701723 C T ZFP64 Silent p.S437S 0.29 TCGA-VQ-A924-01 20 50704973 50704973 G A ZFP64 Missense_Mutation p.R199C 0.28 deleterious(0) probably_damaging(0.999) TCGA-VQ-A924-01 20 57392726 57392726 G - MIR296 RNA 0.19 TCGA-VQ-A924-01 20 57829677 57829677 T A ZNF831 Missense_Mutation p.I1638N 0.21 deleterious(0.01) benign(0.035) TCGA-VQ-A924-01 20 58349409 58349409 C T PHACTR3 Silent p.D346D 0.33 TCGA-VQ-A924-01 20 61511585 61511585 G - DIDO1 Frame_Shift_Del p.P1908Lfs*111 0.27 TCGA-VQ-A924-01 20 62200871 62200871 G A HELZ2 Missense_Mutation p.R240C 0.35 tolerated(0.11) benign(0.001) TCGA-VQ-A924-01 20 62577811 62577811 G A UCKL1 Missense_Mutation p.A100V 0.55 tolerated(1) benign(0.004) TCGA-VQ-A924-01 20 62587635 62587635 T C UCKL1 Missense_Mutation p.S31G 0.36 tolerated_low_confidence(0.57) benign(0) TCGA-VQ-A924-01 20 9561422 9561422 C T PAK7 Silent p.A120A 0.31 TCGA-VQ-A924-01 21 28305325 28305325 C A ADAMTS5 Missense_Mutation p.W576C 0.48 deleterious(0) probably_damaging(1) TCGA-VQ-A924-01 21 31802821 31802821 C A KRTAP13-4 Silent p.P76P 0.45 TCGA-VQ-A924-01 21 34793809 34793809 G A IFNGR2 Missense_Mutation p.A77T 0.30 tolerated(0.65) benign(0.006) TCGA-VQ-A924-01 21 38095375 38095375 C A SIM2 Silent p.R163R 0.35 TCGA-VQ-A924-01 21 38884217 38884217 C T DYRK1A Missense_Mutation p.R559C 0.26 tolerated_low_confidence(0.14) possibly_damaging(0.835) TCGA-VQ-A924-01 21 41032560 41032560 T C B3GALT5 Missense_Mutation p.M25T 0.39 tolerated(0.26) benign(0.004) TCGA-VQ-A924-01 21 43411119 43411120 - A ZBTB21 Frame_Shift_Ins p.Y1029Lfs*12 0.32 TCGA-VQ-A924-01 21 43897436 43897436 G A RSPH1 Missense_Mutation p.T231M 0.20 tolerated(0.23) benign(0.022) TCGA-VQ-A924-01 21 44195410 44195411 - G PDE9A 3'UTR 0.28 TCGA-VQ-A924-01 21 45655413 45655413 G - ICOSLG Frame_Shift_Del p.H147Tfs*15 0.32 TCGA-VQ-A924-01 21 46047346 46047346 G T KRTAP10-9 Missense_Mutation p.Q86H 0.19 deleterious(0.01) unknown(0) TCGA-VQ-A924-01 21 46841501 46841501 T A COL18A1-AS1 RNA 0.33 TCGA-VQ-A924-01 21 47769622 47769622 A G PCNT Missense_Mutation p.H411R 0.33 benign(0.001) TCGA-VQ-A924-01 21 47836629 47836629 C T PCNT Missense_Mutation p.T2266I 0.48 benign(0.008) TCGA-VQ-A924-01 22 18185071 18185071 A C BCL2L13 Missense_Mutation p.E173D 0.28 tolerated(0.06) probably_damaging(0.997) TCGA-VQ-A924-01 22 19184121 19184121 A G CLTCL1 Missense_Mutation p.L1307P 0.32 deleterious(0) probably_damaging(0.985) TCGA-VQ-A924-01 22 19752601 19752601 C T TBX1 Nonsense_Mutation p.R269* 0.29 TCGA-VQ-A924-01 22 20460002 20460002 G A RIMBP3 Missense_Mutation p.R434C 0.42 deleterious(0) probably_damaging(0.981) TCGA-VQ-A924-01 22 20760535 20760535 C T ZNF74 Silent p.T404T 0.22 TCGA-VQ-A924-01 22 23029667 23029667 C T IGLV3-25 Missense_Mutation p.T90M 0.30 deleterious(0) probably_damaging(0.98) TCGA-VQ-A924-01 22 26884115 26884115 C G SRRD Missense_Mutation p.T124S 0.31 tolerated(0.68) benign(0.008) TCGA-VQ-A924-01 22 27012274 27012274 C A CRYBB1 Missense_Mutation p.A4S 0.21 tolerated_low_confidence(0.13) benign(0.364) TCGA-VQ-A924-01 22 29445297 29445297 C T ZNRF3 Silent p.N376N 0.26 TCGA-VQ-A924-01 22 29445653 29445653 C T ZNRF3 Missense_Mutation p.P495L 0.30 tolerated(0.18) benign(0.009) TCGA-VQ-A924-01 22 29446537 29446537 G - ZNRF3 Frame_Shift_Del p.G791Afs*14 0.26 TCGA-VQ-A924-01 22 32002366 32002366 A - SFI1 Frame_Shift_Del p.T705Pfs*196 0.25 TCGA-VQ-A924-01 22 36900295 36900295 G A FOXRED2 Missense_Mutation p.P300L 0.28 tolerated(1) benign(0) TCGA-VQ-A924-01 22 37261048 37261048 C T NCF4 Silent p.L69L 0.22 TCGA-VQ-A924-01 22 37769104 37769104 G - ELFN2 3'UTR 0.24 TCGA-VQ-A924-01 22 38028664 38028664 C T GGA1 Silent p.N622N 0.32 TCGA-VQ-A924-01 22 38823979 38823979 C T KCNJ4 Silent p.T53T 0.26 TCGA-VQ-A924-01 22 38897211 38897211 T - DDX17 Frame_Shift_Del p.K121Sfs*4 0.32 TCGA-VQ-A924-01 22 39441166 39441166 G A APOBEC3F Missense_Mutation p.R131Q 0.13 tolerated(0.88) benign(0.141) TCGA-VQ-A924-01 22 40804640 40804640 C T SGSM3 Missense_Mutation p.R598W 0.21 tolerated(0.08) possibly_damaging(0.901) TCGA-VQ-A924-01 22 41922365 41922365 G A ACO2 Missense_Mutation p.A621T 0.32 deleterious_low_confidence(0.03) benign(0.253) TCGA-VQ-A924-01 22 43460205 43460205 C T TTLL1 Missense_Mutation p.R210H 0.17 deleterious(0.01) possibly_damaging(0.849) TCGA-VQ-A924-01 22 43460287 43460288 AG - TTLL1 Frame_Shift_Del p.I184* 0.27 TCGA-VQ-A924-01 22 43604174 43604174 C T SCUBE1 Missense_Mutation p.A880T 0.25 deleterious(0) probably_damaging(1) TCGA-VQ-A924-01 22 43614455 43614455 T C SCUBE1 Missense_Mutation p.E566G 0.26 tolerated(0.15) benign(0.001) TCGA-VQ-A924-01 22 44892583 44892583 G A LDOC1L 3'UTR 0.34 TCGA-VQ-A924-01 22 45574449 45574449 T - NUP50 Frame_Shift_Del p.F225Lfs*40 0.17 TCGA-VQ-A924-01 22 46760471 46760471 G - CELSR1 Frame_Shift_Del p.P2906Rfs*24 0.17 TCGA-VQ-A924-01 22 47569350 47569350 T C TBC1D22A 3'UTR 0.38 TCGA-VQ-A924-01 22 50217567 50217567 G - BRD1 Frame_Shift_Del p.R134Gfs*56 0.22 TCGA-VQ-A924-01 22 50721226 50721226 C - PLXNB2 Frame_Shift_Del p.S968Pfs*43 0.21 TCGA-VQ-A924-01 22 50956671 50956671 C T NCAPH2 Missense_Mutation p.P204S 0.24 tolerated(0.53) benign(0.149) TCGA-VQ-A924-01 2 101584784 101584784 C - NPAS2 Frame_Shift_Del p.L317* 0.19 TCGA-VQ-A924-01 2 103325088 103325088 G A SLC9A2 3'UTR 0.19 TCGA-VQ-A924-01 2 10580955 10580955 G A ODC1 Silent p.P427P 0.24 TCGA-VQ-A924-01 2 105858209 105858209 A C GPR45 5'UTR 0.22 TCGA-VQ-A924-01 2 109389413 109389413 T - RANBP2 Frame_Shift_Del p.C2737Vfs*35 0.14 TCGA-VQ-A924-01 2 112621435 112621435 C - ANAPC1 Frame_Shift_Del p.G290Efs*26 0.20 TCGA-VQ-A924-01 2 113081928 113081928 C T ZC3H6 Nonsense_Mutation p.Q514* 0.20 TCGA-VQ-A924-01 2 113765508 113765508 G A IL36A Missense_Mutation p.A122T 0.28 deleterious(0) probably_damaging(0.939) TCGA-VQ-A924-01 2 113984812 113984812 G A PAX8 Missense_Mutation p.T370M 0.29 deleterious(0.04) benign(0.162) TCGA-VQ-A924-01 2 114392686 114392686 C T RABL2A Silent p.H92H 0.07 TCGA-VQ-A924-01 2 114699766 114699766 C T ACTR3 Missense_Mutation p.R230C 0.29 deleterious(0) possibly_damaging(0.826) TCGA-VQ-A924-01 2 120847967 120847967 A - EPB41L5 Frame_Shift_Del p.A308Hfs*34 0.25 TCGA-VQ-A924-01 2 121729566 121729566 C T GLI2 Missense_Mutation p.A370V 0.27 tolerated(0.55) benign(0.001) TCGA-VQ-A924-01 2 121732542 121732542 C A GLI2 Missense_Mutation p.L409I 0.32 tolerated(0.19) benign(0.011) TCGA-VQ-A924-01 2 125281928 125281928 G - CNTNAP5 Frame_Shift_Del p.R459Gfs*45 0.13 TCGA-VQ-A924-01 2 128324305 128324305 C T MYO7B Missense_Mutation p.R125C 0.21 deleterious(0.01) possibly_damaging(0.906) TCGA-VQ-A924-01 2 128331537 128331537 G A MYO7B Missense_Mutation p.R212H 0.33 deleterious(0) probably_damaging(1) TCGA-VQ-A924-01 2 128605697 128605697 C T POLR2D Missense_Mutation p.R138H 0.26 deleterious(0.01) probably_damaging(0.968) TCGA-VQ-A924-01 2 12864848 12864848 T C TRIB2 Intron 0.24 TCGA-VQ-A924-01 2 130951940 130951940 C A TUBA3E Missense_Mutation p.V159L 0.34 tolerated_low_confidence(0.11) benign(0.003) TCGA-VQ-A924-01 2 135738905 135738905 C T MAP3K19 Missense_Mutation p.V1136M 0.40 deleterious(0.01) possibly_damaging(0.794) TCGA-VQ-A924-01 2 1437304 1437304 G T TPO Nonsense_Mutation p.E92* 0.27 TCGA-VQ-A924-01 2 1437376 1437376 A G TPO Missense_Mutation p.T116A 0.17 tolerated(0.06) benign(0.013) TCGA-VQ-A924-01 2 143913086 143913086 T G ARHGAP15 Silent p.T9T 0.36 TCGA-VQ-A924-01 2 149227669 149227669 T A MBD5 Missense_Mutation p.S719R 0.10 deleterious(0.01) possibly_damaging(0.504) TCGA-VQ-A924-01 2 152320989 152320989 A - RIF1 Frame_Shift_Del p.N1654Mfs*21 0.24 TCGA-VQ-A924-01 2 15378788 15378788 T C NBAS Missense_Mutation p.E1916G 0.34 deleterious(0.02) possibly_damaging(0.724) TCGA-VQ-A924-01 2 1544451 1544451 G A TPO Missense_Mutation p.V902I 0.35 tolerated_low_confidence(0.4) benign(0.006) TCGA-VQ-A924-01 2 157185029 157185029 T - NR4A2 Frame_Shift_Del p.N294Mfs*7 0.19 TCGA-VQ-A924-01 2 157186197 157186197 T C NR4A2 Missense_Mutation p.T168A 0.22 tolerated(0.49) benign(0) TCGA-VQ-A924-01 2 157407157 157407157 G A GPD2 Silent p.T290T 0.28 TCGA-VQ-A924-01 2 160268936 160268936 T C BAZ2B Missense_Mutation p.R863G 0.34 benign(0.366) TCGA-VQ-A924-01 2 160599702 160599702 C T MARCH7 Missense_Mutation p.S95F 0.28 deleterious(0) probably_damaging(0.997) TCGA-VQ-A924-01 2 164466096 164466096 A T FIGN Missense_Mutation p.V749D 0.30 deleterious(0.01) benign(0.014) TCGA-VQ-A924-01 2 168114446 168114446 T C XIRP2 3'UTR 0.19 TCGA-VQ-A924-01 2 169571586 169571586 C T CERS6 Nonsense_Mutation p.R229* 0.30 TCGA-VQ-A924-01 2 171850196 171850196 A G TLK1 3'UTR 0.27 TCGA-VQ-A924-01 2 176945462 176945462 C T EVX2 Silent p.A268A 0.21 TCGA-VQ-A924-01 2 176947164 176947164 G A EVX2 Silent p.S147S 0.26 TCGA-VQ-A924-01 2 177036775 177036775 G - HOXD3 Frame_Shift_Del p.V358Wfs*72 0.30 TCGA-VQ-A924-01 2 178097120 178097120 C A NFE2L2 Missense_Mutation p.Q198H 0.20 tolerated(0.07) possibly_damaging(0.635) TCGA-VQ-A924-01 2 179253817 179253817 T C OSBPL6 Silent p.Y771Y 0.23 TCGA-VQ-A924-01 2 179436767 179436767 T C TTN Missense_Mutation p.S24698G 0.33 TCGA-VQ-A924-01 2 179473441 179473441 T G TTN Missense_Mutation p.T17433P 0.30 TCGA-VQ-A924-01 2 179644000 179644000 C A TTN Missense_Mutation p.G1307C 0.26 TCGA-VQ-A924-01 2 18112794 18112794 T C KCNS3 Silent p.I173I 0.25 TCGA-VQ-A924-01 2 183584808 183584809 - A DNAJC10 Frame_Shift_Ins p.Y96Vfs*2 0.28 TCGA-VQ-A924-01 2 18767635 18767635 C T NT5C1B Missense_Mutation p.R108Q 0.22 tolerated_low_confidence(0.25) benign(0.001) TCGA-VQ-A924-01 2 189898918 189898918 T C COL5A2 Missense_Mutation p.T1460A 0.18 unknown(0) TCGA-VQ-A924-01 2 191302276 191302276 C T MFSD6 Silent p.I507I 0.34 TCGA-VQ-A924-01 2 191365009 191365009 C - MFSD6 3'UTR 0.27 TCGA-VQ-A924-01 2 191859841 191859841 T - STAT1 Frame_Shift_Del p.N297Tfs*39 0.19 TCGA-VQ-A924-01 2 196753617 196753617 T C DNAH7 Missense_Mutation p.K1712R 0.25 deleterious(0) probably_damaging(0.994) TCGA-VQ-A924-01 2 197777723 197777723 G A PGAP1 Missense_Mutation p.L178F 0.25 deleterious(0.01) probably_damaging(0.985) TCGA-VQ-A924-01 2 20132180 20132180 T - WDR35 Frame_Shift_Del p.N907Ifs*4 0.25 TCGA-VQ-A924-01 2 203407124 203407124 A - BMPR2 Frame_Shift_Del p.K457Nfs*17 0.18 TCGA-VQ-A924-01 2 203420130 203420130 A - BMPR2 Frame_Shift_Del p.N583Tfs*44 0.19 TCGA-VQ-A924-01 2 207174428 207174428 A - ZDBF2 Frame_Shift_Del p.K1728Nfs*5 0.29 TCGA-VQ-A924-01 2 209025577 209025577 C - CRYGA Frame_Shift_Del p.G159Vfs*9 0.29 TCGA-VQ-A924-01 2 215884317 215884317 T - ABCA12 Frame_Shift_Del p.V498* 0.25 TCGA-VQ-A924-01 2 216272898 216272898 C T FN1 Silent p.T817T 0.26 TCGA-VQ-A924-01 2 216965002 216965002 G A TMEM169 Missense_Mutation p.V211I 0.21 tolerated(1) benign(0.001) TCGA-VQ-A924-01 2 217311841 217311841 A G SMARCAL1 Missense_Mutation p.Q604R 0.31 tolerated(0.45) benign(0.042) TCGA-VQ-A924-01 2 219508083 219508084 - C ZNF142 Frame_Shift_Ins p.R1053Tfs*15 0.28 TCGA-VQ-A924-01 2 219515222 219515223 TC - ZNF142 Frame_Shift_Del p.E103Tfs*16 0.27 TCGA-VQ-A924-01 2 219527632 219527632 C T BCS1L Missense_Mutation p.R306C 0.08 tolerated(0.08) benign(0.12) TCGA-VQ-A924-01 2 220283214 220283214 C A DES Silent p.R10R 0.17 TCGA-VQ-A924-01 2 220355498 220355498 C T SPEG Silent p.L3069L 0.36 TCGA-VQ-A924-01 2 220405753 220405753 C T CHPF Missense_Mutation p.R328H 0.21 tolerated(0.33) benign(0.003) TCGA-VQ-A924-01 2 220412406 220412406 C T TMEM198 Silent p.S115S 0.23 TCGA-VQ-A924-01 2 230654398 230654398 G A TRIP12 Missense_Mutation p.P1467S 0.25 deleterious(0.04) benign(0.441) TCGA-VQ-A924-01 2 230911038 230911038 G A SLC16A14 Silent p.P268P 0.29 TCGA-VQ-A924-01 2 231311568 231311568 A G SP100 Silent p.E158E 0.16 TCGA-VQ-A924-01 2 231988435 231988435 G T HTR2B Missense_Mutation p.P15H 0.31 deleterious_low_confidence(0) benign(0.371) TCGA-VQ-A924-01 2 232790265 232790265 G A NPPC Missense_Mutation p.A84V 0.15 tolerated(0.11) possibly_damaging(0.499) TCGA-VQ-A924-01 2 233274365 233274365 G A ALPPL2 Missense_Mutation p.R461H 0.23 deleterious(0) probably_damaging(0.965) TCGA-VQ-A924-01 2 234681161 234681161 A - UGT1A4 Frame_Shift_Del p.R524Efs*22 0.22 TCGA-VQ-A924-01 2 238275519 238275519 C - COL6A3 Frame_Shift_Del p.V1771Sfs*8 0.26 TCGA-VQ-A924-01 2 238461019 238461019 G A MLPH Missense_Mutation p.R572Q 0.21 deleterious(0) possibly_damaging(0.843) TCGA-VQ-A924-01 2 239344647 239344647 C A ASB1 Missense_Mutation p.L163I 0.38 deleterious(0) probably_damaging(0.999) TCGA-VQ-A924-01 2 241078625 241078626 - C OTOS Frame_Shift_Ins p.S78Efs*54 0.21 TCGA-VQ-A924-01 2 241530243 241530243 G A CAPN10 Silent p.P95P 0.23 TCGA-VQ-A924-01 2 241569425 241569425 T A GPR35 Missense_Mutation p.I50N 0.25 deleterious(0.01) benign(0.093) TCGA-VQ-A924-01 2 24962385 24962385 C T NCOA1 Nonsense_Mutation p.Q1096* 0.25 TCGA-VQ-A924-01 2 25064464 25064464 C T ADCY3 Silent p.L343L 0.15 TCGA-VQ-A924-01 2 25383854 25383854 C - POMC 3'UTR 0.42 TCGA-VQ-A924-01 2 27306515 27306515 G A EMILIN1 Silent p.L692L 0.18 TCGA-VQ-A924-01 2 27606455 27606455 T G PPM1G Missense_Mutation p.S327R 0.39 deleterious(0) probably_damaging(0.994) TCGA-VQ-A924-01 2 27802377 27802377 C T C2orf16 Missense_Mutation p.R980C 0.25 deleterious(0) probably_damaging(1) TCGA-VQ-A924-01 2 27804578 27804578 C T C2orf16 Silent p.P1713P 0.05 TCGA-VQ-A924-01 2 29226450 29226450 G T FAM179A Missense_Mutation p.R244S 0.22 tolerated(0.64) benign(0.021) TCGA-VQ-A924-01 2 29296054 29296054 G A C2orf71 Silent p.S358S 0.19 TCGA-VQ-A924-01 2 36943562 36943562 C A VIT Missense_Mutation p.L17I 0.09 tolerated_low_confidence(0.17) benign(0.055) TCGA-VQ-A924-01 2 37208635 37208635 A - HEATR5B Frame_Shift_Del p.*2072N 0.22 TCGA-VQ-A924-01 2 37229593 37229593 G A HEATR5B Missense_Mutation p.R1725W 0.27 deleterious(0) probably_damaging(0.994) TCGA-VQ-A924-01 2 39008775 39008775 T G GEMIN6 Missense_Mutation p.L82R 0.09 deleterious(0) probably_damaging(1) TCGA-VQ-A924-01 2 39278406 39278406 C T SOS1 Missense_Mutation p.R248H 0.18 deleterious(0.01) possibly_damaging(0.804) TCGA-VQ-A924-01 2 39406380 39406380 G A CDKL4 Missense_Mutation p.A292V 0.25 tolerated(0.29) benign(0.001) TCGA-VQ-A924-01 2 39526910 39526910 T C MAP4K3 Silent p.Q384Q 0.20 TCGA-VQ-A924-01 2 40656068 40656068 T C SLC8A1 Silent p.A451A 0.22 TCGA-VQ-A924-01 2 44508639 44508639 T C SLC3A1 Missense_Mutation p.C242R 0.18 deleterious(0.01) probably_damaging(0.997) TCGA-VQ-A924-01 2 44541039 44541039 T C SLC3A1 Silent p.A522A 0.10 TCGA-VQ-A924-01 2 45169172 45169172 C T SIX3 5'UTR 0.16 TCGA-VQ-A924-01 2 46234726 46234726 C T PRKCE Nonsense_Mutation p.Q397* 0.21 TCGA-VQ-A924-01 2 47233086 47233086 G A TTC7A Missense_Mutation p.R364Q 0.22 deleterious(0) probably_damaging(0.942) TCGA-VQ-A924-01 2 48914783 48914783 T - LHCGR 3'UTR 0.31 TCGA-VQ-A924-01 2 48925756 48925756 T G LHCGR Missense_Mutation p.K288N 0.21 tolerated(0.18) benign(0.04) TCGA-VQ-A924-01 2 54895610 54895610 C T SPTBN1 Silent p.V2333V 0.23 TCGA-VQ-A924-01 2 55825552 55825552 C A SMEK2 Missense_Mutation p.Q307H 0.13 deleterious(0.01) possibly_damaging(0.549) TCGA-VQ-A924-01 2 5832913 5832913 C T SOX11 Silent p.D20D 0.44 TCGA-VQ-A924-01 2 62065796 62065796 C T FAM161A Missense_Mutation p.R543Q 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A924-01 2 62067325 62067326 - T FAM161A Frame_Shift_Ins p.Q272Tfs*8 0.23 TCGA-VQ-A924-01 2 64778698 64778698 A T AFTPH Missense_Mutation p.E30D 0.25 tolerated(0.14) probably_damaging(0.931) TCGA-VQ-A924-01 2 69172610 69172610 A C GKN2 Intron 0.25 TCGA-VQ-A924-01 2 70131463 70131463 T - SNRNP27 3'UTR 0.49 TCGA-VQ-A924-01 2 71191572 71191573 - C ATP6V1B1 Frame_Shift_Ins p.I386Hfs*56 0.31 TCGA-VQ-A924-01 2 71209751 71209751 C T ANKRD53 Missense_Mutation p.A276V 0.14 tolerated(0.05) possibly_damaging(0.891) TCGA-VQ-A924-01 2 71351498 71351498 C A MCEE Missense_Mutation p.Q72H 0.28 tolerated(0.08) benign(0.007) TCGA-VQ-A924-01 2 71650549 71650549 A - ZNF638 Frame_Shift_Del p.G1305Vfs*22 0.20 TCGA-VQ-A924-01 2 73315283 73315283 C - RAB11FIP5 Frame_Shift_Del p.G488Vfs*25 0.20 TCGA-VQ-A924-01 2 73676734 73676734 T C ALMS1 Missense_Mutation p.L1026P 0.33 probably_damaging(0.921) TCGA-VQ-A924-01 2 73961672 73961672 G T TPRKB Missense_Mutation p.L9I 0.16 tolerated(0.06) benign(0.269) TCGA-VQ-A924-01 2 80529929 80529929 T C LRRTM1 Missense_Mutation p.N339S 0.26 tolerated(1) benign(0.001) TCGA-VQ-A924-01 2 85571776 85571776 T C RETSAT Silent p.E399E 0.23 TCGA-VQ-A924-01 2 86354370 86354370 T C PTCD3 Silent p.H346H 0.29 TCGA-VQ-A924-01 2 88482261 88482261 C T THNSL2 Silent p.V282V 0.30 TCGA-VQ-A924-01 2 9543499 9543499 G A ASAP2 3'UTR 0.15 TCGA-VQ-A924-01 2 96852984 96852984 C T STARD7 Missense_Mutation p.R300H 0.20 deleterious(0.02) probably_damaging(0.953) TCGA-VQ-A924-01 2 98377315 98377315 G A TMEM131 Missense_Mutation p.P1651L 0.19 tolerated_low_confidence(0.08) probably_damaging(0.998) TCGA-VQ-A924-01 2 99954021 99954021 G T EIF5B Missense_Mutation p.G2W 0.29 benign(0.09) TCGA-VQ-A924-01 3 100963565 100963565 G C IMPG2 Missense_Mutation p.T537S 0.20 tolerated(0.58) benign(0.007) TCGA-VQ-A924-01 3 107491857 107491857 G A BBX Missense_Mutation p.C430Y 0.29 deleterious(0.03) benign(0.005) TCGA-VQ-A924-01 3 111312591 111312591 G A ZBED2 Missense_Mutation p.A153V 0.29 deleterious(0.01) possibly_damaging(0.575) TCGA-VQ-A924-01 3 112642541 112642541 C A CD200R1 Missense_Mutation p.D344Y 0.27 deleterious(0.04) possibly_damaging(0.757) TCGA-VQ-A924-01 3 112729968 112729968 T - C3orf17 Frame_Shift_Del p.A280Lfs*4 0.16 TCGA-VQ-A924-01 3 113346608 113346608 A - SIDT1 3'UTR 0.27 TCGA-VQ-A924-01 3 114014536 114014536 G T TIGIT Missense_Mutation p.C69F 0.26 tolerated(0.21) benign(0.083) TCGA-VQ-A924-01 3 114070445 114070445 G A ZBTB20 Silent p.S160S 0.19 TCGA-VQ-A924-01 3 120321036 120321036 T - NDUFB4 Intron 0.25 TCGA-VQ-A924-01 3 121137304 121137304 G A STXBP5L Missense_Mutation p.R1140Q 0.25 deleterious(0.01) possibly_damaging(0.82) TCGA-VQ-A924-01 3 121340495 121340495 T C FBXO40 Silent p.P73P 0.25 TCGA-VQ-A924-01 3 12198908 12198908 G A TIMP4 Missense_Mutation p.R72W 0.27 deleterious(0) possibly_damaging(0.888) TCGA-VQ-A924-01 3 123339179 123339179 G A MYLK Missense_Mutation p.T1748M 0.29 deleterious(0) possibly_damaging(0.501) TCGA-VQ-A924-01 3 124951953 124951953 C A ZNF148 Missense_Mutation p.E539D 0.24 deleterious(0) probably_damaging(0.978) TCGA-VQ-A924-01 3 125854403 125854403 G A ALDH1L1 Missense_Mutation p.R493W 0.23 deleterious(0) probably_damaging(1) TCGA-VQ-A924-01 3 129231234 129231234 C - IFT122 Frame_Shift_Del p.S1042Rfs*6 0.20 TCGA-VQ-A924-01 3 130405198 130405198 A G PIK3R4 Missense_Mutation p.V1111A 0.14 deleterious(0) probably_damaging(0.909) TCGA-VQ-A924-01 3 133119211 133119211 C T BFSP2 Missense_Mutation p.T95I 0.28 tolerated(0.06) benign(0.007) TCGA-VQ-A924-01 3 134322812 134322812 T C KY Missense_Mutation p.K532R 0.31 tolerated(0.38) possibly_damaging(0.572) TCGA-VQ-A924-01 3 134327676 134327676 T C KY Missense_Mutation p.N302S 0.21 deleterious(0.01) probably_damaging(0.929) TCGA-VQ-A924-01 3 135864030 135864030 C T PPP2R3A 3'UTR 0.15 TCGA-VQ-A924-01 3 13613006 13613007 - C FBLN2 Frame_Shift_Ins p.H386Pfs*10 0.21 TCGA-VQ-A924-01 3 1371501 1371501 A - CNTN6 Frame_Shift_Del p.K418Sfs*63 0.29 TCGA-VQ-A924-01 3 13860531 13860531 G A WNT7A Silent p.R320R 0.30 TCGA-VQ-A924-01 3 141457248 141457248 C A RNF7 Missense_Mutation p.S22Y 0.31 deleterious(0.01) possibly_damaging(0.642) TCGA-VQ-A924-01 3 142720385 142720385 C A U2SURP 5'UTR 0.21 TCGA-VQ-A924-01 3 142735746 142735747 - A U2SURP Frame_Shift_Ins p.N169Kfs*9 0.25 TCGA-VQ-A924-01 3 14700409 14700410 - A CCDC174 Frame_Shift_Ins p.M96Nfs*3 0.27 TCGA-VQ-A924-01 3 147128315 147128315 G A ZIC1 Missense_Mutation p.G139D 0.32 deleterious(0.05) probably_damaging(0.996) TCGA-VQ-A924-01 3 148741977 148741977 G T GYG1 Missense_Mutation p.W249L 0.32 deleterious(0) probably_damaging(0.999) TCGA-VQ-A924-01 3 151165801 151165802 - A IGSF10 Frame_Shift_Ins p.L656Ffs*18 0.20 TCGA-VQ-A924-01 3 151171505 151171505 G T IGSF10 Missense_Mutation p.L128I 0.25 deleterious(0) probably_damaging(0.999) TCGA-VQ-A924-01 3 151535371 151535371 G A AADAC Missense_Mutation p.S119N 0.24 deleterious(0.03) benign(0.25) TCGA-VQ-A924-01 3 154147064 154147064 C A GPR149 Missense_Mutation p.C114F 0.29 tolerated(1) benign(0.019) TCGA-VQ-A924-01 3 155838593 155838593 G A KCNAB1 Missense_Mutation p.E65K 0.18 tolerated_low_confidence(0.1) benign(0.01) TCGA-VQ-A924-01 3 167189545 167189546 - TT SERPINI2 Frame_Shift_Ins p.N26Kfs*28 0.22 TCGA-VQ-A924-01 3 169513953 169513954 - A LRRC34 Intron 0.13 TCGA-VQ-A924-01 3 170184978 170184978 T - SLC7A14 Frame_Shift_Del p.G728Afs*33 0.23 TCGA-VQ-A924-01 3 172166055 172166055 C T GHSR Missense_Mutation p.C50Y 0.28 deleterious(0) benign(0.145) TCGA-VQ-A924-01 3 176769342 176769342 T - TBL1XR1 Frame_Shift_Del p.N126Mfs*16 0.26 TCGA-VQ-A924-01 3 178936095 178936095 A G PIK3CA Missense_Mutation p.Q546R 0.18 deleterious(0.02) probably_damaging(0.984) TCGA-VQ-A924-01 3 180703722 180703722 G T DNAJC19 Missense_Mutation p.P91H 0.21 deleterious(0) probably_damaging(1) TCGA-VQ-A924-01 3 182987674 182987674 T - B3GNT5 Frame_Shift_Del p.W32Gfs*9 0.27 TCGA-VQ-A924-01 3 183209755 183209755 G A KLHL6 Missense_Mutation p.T609I 0.29 deleterious(0) probably_damaging(0.997) TCGA-VQ-A924-01 3 183225935 183225935 G A KLHL6 Missense_Mutation p.T274M 0.13 deleterious(0.03) benign(0.065) TCGA-VQ-A924-01 3 183994719 183994719 C T ECE2 Missense_Mutation p.R174C 0.25 deleterious(0) benign(0.393) TCGA-VQ-A924-01 3 184290564 184290564 C T EPHB3 Silent p.N152N 0.21 TCGA-VQ-A924-01 3 185797737 185797737 G A ETV5 Silent p.G173G 0.27 TCGA-VQ-A924-01 3 187447720 187447720 C T BCL6 Missense_Mutation p.R158Q 0.21 deleterious(0.03) possibly_damaging(0.649) TCGA-VQ-A924-01 3 194147850 194147850 A - ATP13A3 Frame_Shift_Del p.W1027Gfs*31 0.33 TCGA-VQ-A924-01 3 195505250 195505250 G T MUC4 Silent p.T4289T 0.27 TCGA-VQ-A924-01 3 2787316 2787316 A G CNTN4 Missense_Mutation p.Y98C 0.31 deleterious(0) probably_damaging(1) TCGA-VQ-A924-01 3 32859527 32859527 C T TRIM71 5'UTR 0.16 TCGA-VQ-A924-01 3 38048141 38048141 C T VILL Missense_Mutation p.H803Y 0.20 tolerated(0.11) benign(0.026) TCGA-VQ-A924-01 3 38053144 38053144 C T PLCD1 Missense_Mutation p.R171Q 0.47 tolerated(0.69) benign(0.195) TCGA-VQ-A924-01 3 38158719 38158719 G T DLEC1 Silent p.G1442G 0.22 TCGA-VQ-A924-01 3 38173452 38173452 C T ACAA1 Missense_Mutation p.C123Y 0.21 deleterious(0) probably_damaging(0.999) TCGA-VQ-A924-01 3 38417710 38417710 C T XYLB Silent p.N369N 0.28 TCGA-VQ-A924-01 3 38941525 38941525 T - SCN11A Frame_Shift_Del p.I628Sfs*24 0.20 TCGA-VQ-A924-01 3 391152 391152 A G CHL1 Missense_Mutation p.D320G 0.26 deleterious(0) probably_damaging(1) TCGA-VQ-A924-01 3 42448441 42448441 G A LYZL4 Silent p.Y63Y 0.28 TCGA-VQ-A924-01 3 43122910 43122910 G A POMGNT2 Missense_Mutation p.A5V 0.27 tolerated_low_confidence(0.07) unknown(0) TCGA-VQ-A924-01 3 45557739 45557739 C T LARS2 Missense_Mutation p.P672L 0.20 deleterious(0) probably_damaging(1) TCGA-VQ-A924-01 3 45785087 45785087 T - SACM1L Frame_Shift_Del p.F565Lfs*22 0.23 TCGA-VQ-A924-01 3 46306976 46306976 C A CCR3 Silent p.L130L 0.24 TCGA-VQ-A924-01 3 46479597 46479597 A G LTF Silent p.S644S 0.20 TCGA-VQ-A924-01 3 46758993 46758993 T A PRSS50 Missense_Mutation p.T81S 0.21 tolerated(0.49) benign(0.001) TCGA-VQ-A924-01 3 47047687 47047687 C T NBEAL2 Missense_Mutation p.R2318W 0.15 deleterious(0.01) possibly_damaging(0.773) TCGA-VQ-A924-01 3 47451808 47451808 G A PTPN23 Silent p.Q840Q 0.26 TCGA-VQ-A924-01 3 47721947 47721948 - T SMARCC1 Frame_Shift_Ins p.N479Kfs*18 0.24 TCGA-VQ-A924-01 3 48457787 48457787 G A PLXNB1 Missense_Mutation p.R1150C 0.21 tolerated(0.18) possibly_damaging(0.888) TCGA-VQ-A924-01 3 48474075 48474075 G T CCDC51 Missense_Mutation p.L327I 0.15 deleterious(0.03) benign(0.354) TCGA-VQ-A924-01 3 48712141 48712141 G A NCKIPSD Missense_Mutation p.R669C 0.20 deleterious(0) probably_damaging(0.976) TCGA-VQ-A924-01 3 49148555 49148555 C T USP19 Missense_Mutation p.V1123I 0.24 tolerated(0.53) benign(0.274) TCGA-VQ-A924-01 3 49691644 49691644 A G BSN Missense_Mutation p.Q1552R 0.35 unknown(0) TCGA-VQ-A924-01 3 49715003 49715003 C T APEH Intron 0.20 TCGA-VQ-A924-01 3 49761134 49761134 C - GMPPB Frame_Shift_Del p.G9Afs*9 0.23 TCGA-VQ-A924-01 3 49939856 49939856 C T MST1R Missense_Mutation p.R396Q 0.24 deleterious(0) probably_damaging(0.99) TCGA-VQ-A924-01 3 50102506 50102506 G A RBM6 Missense_Mutation p.V877I 0.26 tolerated(0.2) benign(0.268) TCGA-VQ-A924-01 3 50231547 50231547 C T GNAT1 Missense_Mutation p.R201C 0.30 deleterious(0) probably_damaging(0.989) TCGA-VQ-A924-01 3 50312827 50312827 C T LSMEM2 5'Flank 0.29 TCGA-VQ-A924-01 3 50390923 50390923 G - CYB561D2 Frame_Shift_Del p.L141Cfs*67 0.26 TCGA-VQ-A924-01 3 51417604 51417604 C - DOCK3 Frame_Shift_Del p.P1852Qfs*45 0.42 TCGA-VQ-A924-01 3 51418957 51418957 C T DOCK3 Silent p.R2020R 0.23 TCGA-VQ-A924-01 3 51430802 51430802 C T RBM15B Missense_Mutation p.H658Y 0.26 tolerated(0.94) possibly_damaging(0.522) TCGA-VQ-A924-01 3 52265167 52265168 CT - TWF2 Frame_Shift_Del p.E153Afs*7 0.32 TCGA-VQ-A924-01 3 52407042 52407042 G A DNAH1 Missense_Mutation p.G2320S 0.35 benign(0.097) TCGA-VQ-A924-01 3 52506359 52506359 A G NISCH Missense_Mutation p.Q205R 0.23 tolerated(0.16) benign(0.001) TCGA-VQ-A924-01 3 52553979 52553979 T C STAB1 Missense_Mutation p.L1752P 0.34 deleterious(0) probably_damaging(0.936) TCGA-VQ-A924-01 3 52620540 52620540 G A PBRM1 Silent p.R1071R 0.31 TCGA-VQ-A924-01 3 72427728 72427728 G A RYBP Silent p.N254N 0.06 TCGA-VQ-A924-01 3 74420367 74420367 G T CNTN3 Missense_Mutation p.P213H 0.19 deleterious(0) probably_damaging(1) TCGA-VQ-A924-01 3 75476781 75476781 C T FAM86DP RNA 0.15 TCGA-VQ-A924-01 3 78696781 78696782 - T ROBO1 Frame_Shift_Ins p.T946Nfs*24 0.22 TCGA-VQ-A924-01 3 9986205 9986205 G A CRELD1 3'UTR 0.14 TCGA-VQ-A924-01 3 99890707 99890707 C T CMSS1 Silent p.D181D 0.15 TCGA-VQ-A924-01 4 10084739 10084739 A G WDR1 Missense_Mutation p.V368A 0.12 deleterious(0) probably_damaging(0.999) TCGA-VQ-A924-01 4 103870489 103870489 A - SLC9B1 Frame_Shift_Del p.Y103Ifs*17 0.21 TCGA-VQ-A924-01 4 104080017 104080017 C A CENPE Missense_Mutation p.Q876H 0.10 possibly_damaging(0.472) TCGA-VQ-A924-01 4 109002810 109002810 T C LEF1 Silent p.V218V 0.44 TCGA-VQ-A924-01 4 110442694 110442694 G A SEC24B Missense_Mutation p.R807H 0.35 deleterious(0) probably_damaging(1) TCGA-VQ-A924-01 4 110681434 110681434 C T CFI Missense_Mutation p.G292D 0.20 tolerated(0.41) benign(0.02) TCGA-VQ-A924-01 4 114288835 114288835 G C ANK2 Missense_Mutation p.D3716H 0.06 probably_damaging(1) TCGA-VQ-A924-01 4 114823493 114823494 - T ARSJ Frame_Shift_Ins p.K580Efs*32 0.29 TCGA-VQ-A924-01 4 119736797 119736797 G A SEC24D Missense_Mutation p.P161L 0.21 tolerated(0.06) benign(0.193) TCGA-VQ-A924-01 4 122740044 122740044 C T CCNA2 Missense_Mutation p.D343N 0.42 deleterious(0.03) possibly_damaging(0.829) TCGA-VQ-A924-01 4 123748399 123748399 G A FGF2 Missense_Mutation p.G157S 0.25 deleterious(0) possibly_damaging(0.828) TCGA-VQ-A924-01 4 123859335 123859335 G - SPATA5 Frame_Shift_Del p.A465Pfs*14 0.25 TCGA-VQ-A924-01 4 126337721 126337721 G A FAT4 Missense_Mutation p.S2321N 0.31 benign(0.034) TCGA-VQ-A924-01 4 126411912 126411912 C T FAT4 Silent p.H4645H 0.31 TCGA-VQ-A924-01 4 128564710 128564710 A - INTU Frame_Shift_Del p.N62Mfs*9 0.22 TCGA-VQ-A924-01 4 134072506 134072506 G A PCDH10 Missense_Mutation p.R404H 0.28 deleterious(0.01) probably_damaging(0.91) TCGA-VQ-A924-01 4 138451184 138451184 C T PCDH18 Missense_Mutation p.A687T 0.14 tolerated(0.69) benign(0.002) TCGA-VQ-A924-01 4 144141476 144141476 C T USP38 Missense_Mutation p.A999V 0.25 deleterious(0) probably_damaging(0.99) TCGA-VQ-A924-01 4 144141546 144141546 C T USP38 Silent p.S1022S 0.26 TCGA-VQ-A924-01 4 146823486 146823486 G T ZNF827 Missense_Mutation p.L309M 0.13 deleterious(0.01) probably_damaging(0.962) TCGA-VQ-A924-01 4 147442889 147442889 T C SLC10A7 5'UTR 0.27 TCGA-VQ-A924-01 4 149356395 149356395 T C NR3C2 Missense_Mutation p.R540G 0.25 deleterious(0) possibly_damaging(0.587) TCGA-VQ-A924-01 4 155158289 155158289 G A DCHS2 Silent p.P2050P 0.47 TCGA-VQ-A924-01 4 156828900 156828900 C T TDO2 Missense_Mutation p.L87F 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-VQ-A924-01 4 159092458 159092458 G A FAM198B Missense_Mutation p.R24C 0.23 deleterious(0.02) benign(0) TCGA-VQ-A924-01 4 162402245 162402245 T G FSTL5 Missense_Mutation p.K512T 0.23 tolerated(0.06) possibly_damaging(0.475) TCGA-VQ-A924-01 4 164433976 164433976 T C TMA16 Missense_Mutation p.L40S 0.20 tolerated(0.26) benign(0.124) TCGA-VQ-A924-01 4 168155232 168155232 C - SPOCK3 Frame_Shift_Del p.R32Gfs*34 0.30 TCGA-VQ-A924-01 4 170017720 170017720 G A SH3RF1 Missense_Mutation p.R873C 0.26 deleterious(0) probably_damaging(0.956) TCGA-VQ-A924-01 4 170077671 170077672 - G SH3RF1 Frame_Shift_Ins p.T185Hfs*8 0.21 TCGA-VQ-A924-01 4 170634350 170634350 T C CLCN3 Missense_Mutation p.M757T 0.20 deleterious(0.02) probably_damaging(0.914) TCGA-VQ-A924-01 4 170913240 170913240 G A MFAP3L Silent p.C173C 0.18 TCGA-VQ-A924-01 4 174450159 174450159 C - HAND2 Frame_Shift_Del p.P95Rfs*4 0.27 TCGA-VQ-A924-01 4 183268040 183268040 C T TENM3 Silent p.L157L 0.27 TCGA-VQ-A924-01 4 183664510 183664510 C T TENM3 Silent p.G1189G 0.30 TCGA-VQ-A924-01 4 184930569 184930569 G A STOX2 Missense_Mutation p.R193Q 0.25 tolerated(0.38) benign(0.079) TCGA-VQ-A924-01 4 184938316 184938316 C T STOX2 Missense_Mutation p.P887L 0.30 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-VQ-A924-01 4 186066939 186066940 CA - SLC25A4 Frame_Shift_Del p.I210Ffs*22 0.14 TCGA-VQ-A924-01 4 187535367 187535367 T - FAT1 Frame_Shift_Del p.K3069Nfs*4 0.23 TCGA-VQ-A924-01 4 187540840 187540840 C T FAT1 Silent p.T2300T 0.22 TCGA-VQ-A924-01 4 187549891 187549891 A G FAT1 Silent p.N1450N 0.33 TCGA-VQ-A924-01 4 187630548 187630548 A G FAT1 Missense_Mutation p.L145S 0.25 probably_damaging(0.999) TCGA-VQ-A924-01 4 1941601 1941601 C T WHSC1 Intron 0.18 TCGA-VQ-A924-01 4 1985756 1985756 G A NELFA Missense_Mutation p.A385V 0.33 tolerated(0.24) benign(0.149) TCGA-VQ-A924-01 4 25353254 25353254 T - ZCCHC4 Frame_Shift_Del p.F320Lfs*19 0.24 TCGA-VQ-A924-01 4 30724874 30724874 C T PCDH7 Silent p.N610N 0.22 TCGA-VQ-A924-01 4 3319454 3319454 C - RGS12 Frame_Shift_Del p.P521Lfs*56 0.25 TCGA-VQ-A924-01 4 3432576 3432576 C T RGS12 Silent p.H1336H 0.27 TCGA-VQ-A924-01 4 38690460 38690460 A - KLF3 Frame_Shift_Del p.K106Nfs*21 0.21 TCGA-VQ-A924-01 4 38691476 38691476 C - KLF3 Frame_Shift_Del p.P226Rfs*52 0.25 TCGA-VQ-A924-01 4 38774930 38774930 C A TLR10 Missense_Mutation p.R761M 0.29 deleterious(0) probably_damaging(0.983) TCGA-VQ-A924-01 4 38879927 38879927 C T FAM114A1 Silent p.N76N 0.33 TCGA-VQ-A924-01 4 39310401 39310402 TT - RFC1 Frame_Shift_Del p.K580Sfs*9 0.23 TCGA-VQ-A924-01 4 41015725 41015725 G A APBB2 Missense_Mutation p.P237L 0.27 deleterious(0) probably_damaging(0.999) TCGA-VQ-A924-01 4 42003696 42003696 T C SLC30A9 Missense_Mutation p.I58T 0.31 tolerated_low_confidence(0.27) benign(0.001) TCGA-VQ-A924-01 4 44449827 44449827 G A KCTD8 Silent p.C238C 0.24 TCGA-VQ-A924-01 4 44449842 44449842 C T KCTD8 Silent p.A233A 0.24 TCGA-VQ-A924-01 4 47942805 47942805 G A CNGA1 Silent p.I282I 0.27 TCGA-VQ-A924-01 4 48859371 48859372 - A OCIAD1 Frame_Shift_Ins p.E233Rfs*13 0.26 TCGA-VQ-A924-01 4 517280 517280 G T PIGG Missense_Mutation p.E549D 0.25 deleterious(0.01) possibly_damaging(0.576) TCGA-VQ-A924-01 4 56345102 56345102 G A CLOCK Missense_Mutation p.R46C 0.08 deleterious(0) probably_damaging(1) TCGA-VQ-A924-01 4 57181968 57181968 G A KIAA1211 Missense_Mutation p.R767H 0.30 tolerated(0.23) possibly_damaging(0.715) TCGA-VQ-A924-01 4 57843559 57843559 C A NOA1 Missense_Mutation p.G65C 0.29 deleterious_low_confidence(0.02) benign(0.319) TCGA-VQ-A924-01 4 57876528 57876528 T C POLR2B Missense_Mutation p.V469A 0.21 deleterious(0) probably_damaging(0.999) TCGA-VQ-A924-01 4 5969153 5969153 C A C4orf50 Missense_Mutation p.A623S 0.26 tolerated(0.16) benign(0.28) TCGA-VQ-A924-01 4 6303072 6303072 G A WFS1 Missense_Mutation p.R517H 0.23 deleterious(0.01) possibly_damaging(0.872) TCGA-VQ-A924-01 4 6611761 6611761 A G MAN2B2 Missense_Mutation p.N748S 0.21 tolerated(0.29) benign(0.034) TCGA-VQ-A924-01 4 6925503 6925503 G A TBC1D14 Silent p.T129T 0.35 TCGA-VQ-A924-01 4 7043779 7043779 T G CCDC96 Missense_Mutation p.K296T 0.28 deleterious(0.05) benign(0.184) TCGA-VQ-A924-01 4 71110584 71110584 T - CSN3 Frame_Shift_Del p.L18Wfs*52 0.17 TCGA-VQ-A924-01 4 76911917 76911917 G T SDAD1 Silent p.A26A 0.22 TCGA-VQ-A924-01 4 7741941 7741941 G A SORCS2 Missense_Mutation p.V1144M 0.19 deleterious_low_confidence(0.01) benign(0.341) TCGA-VQ-A924-01 4 79258880 79258880 C A FRAS1 Silent p.I777I 0.26 TCGA-VQ-A924-01 4 7985064 7985064 G A ABLIM2 Missense_Mutation p.P584L 0.31 deleterious(0) probably_damaging(0.917) TCGA-VQ-A924-01 4 8089996 8089996 G - ABLIM2 Frame_Shift_Del p.D120Tfs*3 0.22 TCGA-VQ-A924-01 4 83802012 83802012 A G SEC31A Missense_Mutation p.L48S 0.08 deleterious(0) benign(0.429) TCGA-VQ-A924-01 4 88983064 88983064 T - PKD2 Frame_Shift_Del p.L677Wfs*11 0.21 TCGA-VQ-A924-01 4 89052271 89052271 T - ABCG2 Frame_Shift_Del p.N158Tfs*11 0.20 TCGA-VQ-A924-01 4 89618948 89618948 G T NAP1L5 5'UTR 0.14 TCGA-VQ-A924-01 4 96140294 96140294 G - UNC5C Frame_Shift_Del p.Q491Kfs*15 0.26 TCGA-VQ-A924-01 4 9784693 9784693 T C DRD5 Missense_Mutation p.F347S 0.22 deleterious(0) probably_damaging(0.919) TCGA-VQ-A924-01 5 101774440 101774440 A G SLCO6A1 Missense_Mutation p.I386T 0.35 tolerated(0.06) benign(0.048) TCGA-VQ-A924-01 5 102433429 102433429 G T GIN1 Silent p.T232T 0.16 TCGA-VQ-A924-01 5 10973742 10973742 G A CTNND2 Silent p.Y1167Y 0.27 TCGA-VQ-A924-01 5 110427979 110427979 A G WDR36 5'UTR 0.35 TCGA-VQ-A924-01 5 111091613 111091613 A C NREP Intron 0.40 TCGA-VQ-A924-01 5 118574726 118574726 G A DMXL1 Missense_Mutation p.V2847I 0.24 tolerated(1) benign(0.005) TCGA-VQ-A924-01 5 119800279 119800279 T C PRR16 5'UTR 0.29 TCGA-VQ-A924-01 5 127626429 127626429 T C FBN2 Missense_Mutation p.D2147G 0.33 tolerated(1) benign(0.002) TCGA-VQ-A924-01 5 127713540 127713540 A G FBN2 Missense_Mutation p.L585P 0.26 tolerated(0.05) probably_damaging(0.997) TCGA-VQ-A924-01 5 128977602 128977602 C T ADAMTS19 Silent p.C601C 0.19 TCGA-VQ-A924-01 5 129521508 129521508 T - CHSY3 3'UTR 0.25 TCGA-VQ-A924-01 5 132046700 132046700 A G KIF3A Silent p.D393D 0.28 TCGA-VQ-A924-01 5 132534947 132534947 C - FSTL4 Frame_Shift_Del p.G790Vfs*6 0.37 TCGA-VQ-A924-01 5 132553042 132553042 T - FSTL4 Frame_Shift_Del p.N496Mfs*26 0.28 TCGA-VQ-A924-01 5 134305723 134305723 T - CATSPER3 Frame_Shift_Del p.F66Lfs*10 0.27 TCGA-VQ-A924-01 5 138861063 138861063 C A TMEM173 Missense_Mutation p.R76M 0.38 deleterious(0) probably_damaging(1) TCGA-VQ-A924-01 5 140166382 140166382 G A PCDHA1 Silent p.T169T 0.23 TCGA-VQ-A924-01 5 140201830 140201830 C T PCDHA5 Missense_Mutation p.S157L 0.39 deleterious_low_confidence(0.03) benign(0.287) TCGA-VQ-A924-01 5 140203448 140203448 C T PCDHA5 Silent p.N696N 0.21 TCGA-VQ-A924-01 5 140215420 140215420 G A PCDHA7 Silent p.A484A 0.25 TCGA-VQ-A924-01 5 140221210 140221210 T C PCDHA8 Missense_Mutation p.C102R 0.24 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-VQ-A924-01 5 140347746 140347746 T C PCDHAC2 Silent p.N465N 0.29 TCGA-VQ-A924-01 5 140531520 140531520 A G PCDHB6 Missense_Mutation p.Y561C 0.20 deleterious(0) probably_damaging(0.953) TCGA-VQ-A924-01 5 140573954 140573954 C T PCDHB10 Missense_Mutation p.T610M 0.14 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-VQ-A924-01 5 140615785 140615785 C T PCDHB18 RNA 0.31 TCGA-VQ-A924-01 5 140753728 140753728 C T PCDHGA6 Silent p.A26A 0.20 TCGA-VQ-A924-01 5 140793212 140793212 C A PCDHGA10 Missense_Mutation p.P157H 0.21 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-VQ-A924-01 5 140811151 140811151 G A PCDHGA12 Silent p.A275A 0.33 TCGA-VQ-A924-01 5 141035785 141035785 C T ARAP3 Missense_Mutation p.R1283H 0.22 deleterious(0) probably_damaging(0.996) TCGA-VQ-A924-01 5 141693949 141693950 GA - SPRY4 Frame_Shift_Del p.S265Rfs*78 0.28 TCGA-VQ-A924-01 5 14487781 14487781 C - TRIO Frame_Shift_Del p.V2351Cfs*62 0.25 TCGA-VQ-A924-01 5 146750275 146750275 C T STK32A Missense_Mutation p.T240M 0.26 deleterious(0.03) probably_damaging(0.967) TCGA-VQ-A924-01 5 146785174 146785174 T - DPYSL3 Frame_Shift_Del p.G385Efs*3 0.29 TCGA-VQ-A924-01 5 147790260 147790260 T C FBXO38 Missense_Mutation p.M342T 0.31 deleterious(0.02) possibly_damaging(0.884) TCGA-VQ-A924-01 5 148407786 148407786 C A SH3TC2 Missense_Mutation p.E503D 0.17 tolerated(0.89) benign(0.006) TCGA-VQ-A924-01 5 149240492 149240492 C - PDE6A Frame_Shift_Del p.G850Vfs*42 0.32 TCGA-VQ-A924-01 5 153789184 153789184 C T GALNT10 Silent p.S416S 0.32 TCGA-VQ-A924-01 5 154200924 154200924 G A FAXDC2 Silent p.I247I 0.29 TCGA-VQ-A924-01 5 156533904 156533904 G A HAVCR2 Missense_Mutation p.A43V 0.22 deleterious(0.03) benign(0.1) TCGA-VQ-A924-01 5 156590134 156590134 G A FAM71B Missense_Mutation p.T381M 0.23 tolerated(0.18) benign(0.017) TCGA-VQ-A924-01 5 167986128 167986128 A - PANK3 Frame_Shift_Del p.L324Yfs*8 0.17 TCGA-VQ-A924-01 5 168123410 168123410 C A SLIT3 Missense_Mutation p.G990V 0.26 deleterious(0.01) probably_damaging(1) TCGA-VQ-A924-01 5 169533384 169533385 - A FOXI1 Frame_Shift_Ins p.R143Afs*62 0.14 TCGA-VQ-A924-01 5 170305174 170305174 A G RANBP17 Missense_Mutation p.E31G 0.30 deleterious(0) probably_damaging(0.996) TCGA-VQ-A924-01 5 175795830 175795830 C T ARL10 Missense_Mutation p.R136C 0.24 deleterious(0) probably_damaging(0.999) TCGA-VQ-A924-01 5 176003133 176003134 - C CDHR2 Frame_Shift_Ins p.R383Pfs*6 0.20 TCGA-VQ-A924-01 5 176024142 176024142 C T GPRIN1 Silent p.A898A 0.52 TCGA-VQ-A924-01 5 176799138 176799138 C T RGS14 3'UTR 0.35 TCGA-VQ-A924-01 5 176825241 176825241 C - SLC34A1 Frame_Shift_Del p.R627Vfs*55 0.38 TCGA-VQ-A924-01 5 180057628 180057628 G A FLT4 Silent p.Y109Y 0.24 TCGA-VQ-A924-01 5 180166230 180166231 AA - OR2Y1 Frame_Shift_Del p.F276Lfs*? 0.26 TCGA-VQ-A924-01 5 180687556 180687556 A G TRIM52 Missense_Mutation p.Y87H 0.25 tolerated(0.05) probably_damaging(0.99) TCGA-VQ-A924-01 5 1816045 1816045 C T NDUFS6 3'UTR 0.21 TCGA-VQ-A924-01 5 24492962 24492962 C T CDH10 Missense_Mutation p.A530T 0.19 tolerated(0.44) benign(0.132) TCGA-VQ-A924-01 5 24537489 24537489 C A CDH10 Missense_Mutation p.G176C 0.23 deleterious(0) probably_damaging(0.997) TCGA-VQ-A924-01 5 31322962 31322962 A - CDH6 Frame_Shift_Del p.E643Sfs*3 0.22 TCGA-VQ-A924-01 5 31508765 31508765 C T DROSHA Missense_Mutation p.R517Q 0.30 deleterious(0.01) probably_damaging(0.97) TCGA-VQ-A924-01 5 32126580 32126580 C T GOLPH3 Missense_Mutation p.R212H 0.10 deleterious(0.02) possibly_damaging(0.842) TCGA-VQ-A924-01 5 32783046 32783046 G A NPR3 Silent p.P446P 0.26 TCGA-VQ-A924-01 5 32789749 32789749 T C AC026703.1 Missense_Mutation p.L81S 0.22 possibly_damaging(0.765) TCGA-VQ-A924-01 5 34796096 34796096 A G RAI14 Missense_Mutation p.T77A 0.24 tolerated(0.82) benign(0.019) TCGA-VQ-A924-01 5 36985528 36985528 A - NIPBL Frame_Shift_Del p.N751Mfs*43 0.15 TCGA-VQ-A924-01 5 37187547 37187547 C T C5orf42 Missense_Mutation p.S1350N 0.23 deleterious(0) probably_damaging(0.999) TCGA-VQ-A924-01 5 38881859 38881859 A G OSMR Silent p.E137E 0.33 TCGA-VQ-A924-01 5 41010040 41010040 G A MROH2B Missense_Mutation p.P1093S 0.27 tolerated(0.1) possibly_damaging(0.511) TCGA-VQ-A924-01 5 434592 434592 G A AHRR Silent p.R601R 0.14 TCGA-VQ-A924-01 5 45462092 45462092 A G HCN1 Silent p.Y289Y 0.25 TCGA-VQ-A924-01 5 475226 475226 G A SLC9A3 Missense_Mutation p.S758F 0.17 tolerated(0.21) benign(0.013) TCGA-VQ-A924-01 5 5464738 5464738 G A KIAA0947 Missense_Mutation p.R1764Q 0.39 deleterious(0) probably_damaging(1) TCGA-VQ-A924-01 5 6337370 6337370 G A CTD-2324F15.2 RNA 0.35 TCGA-VQ-A924-01 5 65460650 65460650 G A SREK1 Missense_Mutation p.R309H 0.27 deleterious(0.02) unknown(0) TCGA-VQ-A924-01 5 68498797 68498797 C T CENPH Nonsense_Mutation p.Q163* 0.27 TCGA-VQ-A924-01 5 74091925 74091925 T C FAM169A Missense_Mutation p.E397G 0.25 tolerated(0.06) benign(0.004) TCGA-VQ-A924-01 5 79733249 79733249 A G ZFYVE16 Missense_Mutation p.T249A 0.11 tolerated(0.09) benign(0.345) TCGA-VQ-A924-01 5 82834440 82834440 A G VCAN Missense_Mutation p.H1873R 0.24 tolerated(0.38) benign(0.001) TCGA-VQ-A924-01 5 82835229 82835232 AACA - VCAN Frame_Shift_Del p.T2138Sfs*20 0.20 TCGA-VQ-A924-01 5 86659182 86659182 A - RASA1 Frame_Shift_Del p.N492Ifs*6 0.24 TCGA-VQ-A924-01 5 86682702 86682703 - T RASA1 Frame_Shift_Ins p.L971Ffs*3 0.22 TCGA-VQ-A924-01 5 90052437 90052437 A G GPR98 Missense_Mutation p.H3916R 0.33 possibly_damaging(0.84) TCGA-VQ-A924-01 5 94764400 94764400 C T FAM81B Silent p.P250P 0.19 TCGA-VQ-A924-01 5 95236684 95236684 C A ELL2 Missense_Mutation p.R281L 0.11 tolerated(0.06) benign(0.072) TCGA-VQ-A924-01 6 100957911 100957911 C A ASCC3 Nonsense_Mutation p.G2120* 0.24 TCGA-VQ-A924-01 6 101296336 101296336 A - ASCC3 Frame_Shift_Del p.F163Lfs*5 0.40 TCGA-VQ-A924-01 6 108984754 108984754 G - FOXO3 Frame_Shift_Del p.K242Rfs*117 0.22 TCGA-VQ-A924-01 6 119345785 119345785 T C FAM184A Missense_Mutation p.H118R 0.31 deleterious(0.01) probably_damaging(0.962) TCGA-VQ-A924-01 6 119522439 119522439 C A MAN1A1 Missense_Mutation p.S397I 0.29 tolerated(0.18) possibly_damaging(0.526) TCGA-VQ-A924-01 6 12124036 12124036 C T HIVEP1 Silent p.I1336I 0.21 TCGA-VQ-A924-01 6 125232198 125232198 A - RP11-510H23.1 RNA 0.29 TCGA-VQ-A924-01 6 125284072 125284072 C - RP11-510H23.1 RNA 0.23 TCGA-VQ-A924-01 6 127652056 127652056 T - ECHDC1 Frame_Shift_Del p.T46Hfs*24 0.24 TCGA-VQ-A924-01 6 127837038 127837038 C - SOGA3 Frame_Shift_Del p.G241Afs*133 0.21 TCGA-VQ-A924-01 6 132198235 132198235 C - ENPP1 Frame_Shift_Del p.L611Wfs*34 0.20 TCGA-VQ-A924-01 6 13228093 13228093 G A PHACTR1 Silent p.G344G 0.36 TCGA-VQ-A924-01 6 137330455 137330455 G A IL20RA Missense_Mutation p.T193M 0.20 tolerated(0.08) benign(0.094) TCGA-VQ-A924-01 6 139135710 139135710 T - ECT2L Frame_Shift_Del p.L52* 0.26 TCGA-VQ-A924-01 6 143759813 143759813 T C ADAT2 Missense_Mutation p.N39D 0.32 tolerated(0.36) benign(0.065) TCGA-VQ-A924-01 6 144086861 144086861 G T PHACTR2 Missense_Mutation p.W386C 0.05 tolerated_low_confidence(0.06) probably_damaging(0.999) TCGA-VQ-A924-01 6 144803395 144803395 G A UTRN Silent p.K1186K 0.26 TCGA-VQ-A924-01 6 146720429 146720429 G A GRM1 Missense_Mutation p.G752S 0.24 tolerated(0.08) probably_damaging(0.919) TCGA-VQ-A924-01 6 147636816 147636816 C T STXBP5 Missense_Mutation p.A523V 0.23 deleterious(0.01) possibly_damaging(0.885) TCGA-VQ-A924-01 6 148865885 148865885 A G SASH1 Silent p.L1093L 0.21 TCGA-VQ-A924-01 6 150464479 150464479 G A PPP1R14C Missense_Mutation p.A51T 0.39 tolerated(0.45) unknown(0) TCGA-VQ-A924-01 6 152420124 152420124 T C ESR1 3'UTR 0.29 TCGA-VQ-A924-01 6 152527474 152527474 C T SYNE1 Silent p.R7616R 0.22 TCGA-VQ-A924-01 6 152542604 152542604 C T SYNE1 Missense_Mutation p.V7205M 0.24 possibly_damaging(0.843) TCGA-VQ-A924-01 6 152737629 152737629 T - SYNE1 Frame_Shift_Del p.A1982Hfs*10 0.26 TCGA-VQ-A924-01 6 158923874 158923874 C - TULP4 Frame_Shift_Del p.P1061Rfs*11 0.14 TCGA-VQ-A924-01 6 160221773 160221773 C T PNLDC1 Nonsense_Mutation p.R5* 0.28 TCGA-VQ-A924-01 6 161032620 161032620 A G LPA Silent p.S859S 0.27 TCGA-VQ-A924-01 6 16141856 16141856 G A MYLIP Silent p.R93R 0.22 TCGA-VQ-A924-01 6 16307057 16307057 A G ATXN1 Missense_Mutation p.F651L 0.17 deleterious(0) benign(0.237) TCGA-VQ-A924-01 6 166571955 166571955 G - T Frame_Shift_Del p.L386Sfs*39 0.29 TCGA-VQ-A924-01 6 167416821 167416822 TT - FGFR1OP Intron 0.34 TCGA-VQ-A924-01 6 167709625 167709625 G T UNC93A Missense_Mutation p.K125N 0.32 tolerated(0.27) benign(0.053) TCGA-VQ-A924-01 6 168370556 168370556 A G MLLT4 Missense_Mutation p.N295D 0.19 tolerated_low_confidence(0.12) benign(0.007) TCGA-VQ-A924-01 6 170110375 170110375 C T PHF10 Missense_Mutation p.G357D 0.21 tolerated(0.1) benign(0.039) TCGA-VQ-A924-01 6 17292140 17292140 C T RBM24 Silent p.A167A 0.31 TCGA-VQ-A924-01 6 18122226 18122226 A - NHLRC1 Frame_Shift_Del p.F204Lfs*28 0.29 TCGA-VQ-A924-01 6 26225657 26225657 C T HIST1H3E Missense_Mutation p.A92V 0.25 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-VQ-A924-01 6 26271224 26271224 C T HIST1H3G Missense_Mutation p.R130H 0.24 tolerated_low_confidence(0.07) benign(0.346) TCGA-VQ-A924-01 6 28057068 28057068 A G ZNF165 Silent p.K426K 0.30 TCGA-VQ-A924-01 6 28358391 28358391 C T ZSCAN12 Missense_Mutation p.G559E 0.27 deleterious(0.03) probably_damaging(0.968) TCGA-VQ-A924-01 6 29079976 29079980 ACTTT - OR2J3 Frame_Shift_Del p.Y105Cfs*18 0.35 TCGA-VQ-A924-01 6 29080468 29080468 A G OR2J3 Silent p.S267S 0.23 TCGA-VQ-A924-01 6 29974785 29974785 G T ZNRD1-AS1 Intron 0.65 TCGA-VQ-A924-01 6 30071468 30071468 A C TRIM31 Missense_Mutation p.C375G 0.28 tolerated_low_confidence(0.42) benign(0.004) TCGA-VQ-A924-01 6 30545672 30545672 G A ABCF1 Silent p.Q66Q 0.26 TCGA-VQ-A924-01 6 30569713 30569713 C A PPP1R10 Missense_Mutation p.D905Y 0.29 deleterious_low_confidence(0.03) unknown(0) TCGA-VQ-A924-01 6 30919618 30919618 C T DPCR1 Missense_Mutation p.T1126I 0.31 deleterious(0.03) probably_damaging(0.991) TCGA-VQ-A924-01 6 3113589 3113589 G A RIPK1 3'UTR 0.23 TCGA-VQ-A924-01 6 31474051 31474051 C T MICB Missense_Mutation p.P153S 0.24 tolerated(0.18) probably_damaging(0.998) TCGA-VQ-A924-01 6 31508954 31508954 G A DDX39B Intron 0.25 TCGA-VQ-A924-01 6 31749716 31749716 C T VARS Missense_Mutation p.R752Q 0.27 tolerated(0.22) benign(0.009) TCGA-VQ-A924-01 6 31785356 31785356 G A HSPA1A Missense_Mutation p.S608N 0.24 deleterious_low_confidence(0.01) benign(0.328) TCGA-VQ-A924-01 6 31867990 31867990 C A ZBTB12 Missense_Mutation p.G365C 0.19 deleterious(0.01) probably_damaging(0.991) TCGA-VQ-A924-01 6 31926206 31926206 G - NELFE Frame_Shift_Del p.G7Dfs*2 0.24 TCGA-VQ-A924-01 6 31936296 31936297 - C SKIV2L Frame_Shift_Ins p.R1019Pfs*36 0.26 TCGA-VQ-A924-01 6 32096678 32096678 C - FKBPL Frame_Shift_Del p.V294Lfs*22 0.21 TCGA-VQ-A924-01 6 32165191 32165191 C T NOTCH4 Missense_Mutation p.R1646Q 0.10 deleterious(0.02) benign(0.225) TCGA-VQ-A924-01 6 33234983 33234983 C T VPS52 Silent p.A369A 0.30 TCGA-VQ-A924-01 6 33272377 33272377 G - TAPBP Frame_Shift_Del p.R303Gfs*100 0.22 TCGA-VQ-A924-01 6 33561074 33561074 G T GGNBP1 3'Flank 0.24 TCGA-VQ-A924-01 6 34831803 34831803 G - UHRF1BP1 Frame_Shift_Del p.V1082Wfs*5 0.26 TCGA-VQ-A924-01 6 35278275 35278275 C T DEF6 Silent p.L93L 0.24 TCGA-VQ-A924-01 6 35289136 35289136 C T DEF6 Silent p.A615A 0.28 TCGA-VQ-A924-01 6 36181816 36181816 A G BRPF3 Missense_Mutation p.E881G 0.33 tolerated(0.21) benign(0.002) TCGA-VQ-A924-01 6 36334421 36334421 C A ETV7 3'UTR 0.33 TCGA-VQ-A924-01 6 36442821 36442821 C T KCTD20 Missense_Mutation p.P139L 0.21 deleterious(0) probably_damaging(1) TCGA-VQ-A924-01 6 38816440 38816440 A - DNAH8 Frame_Shift_Del p.N1473Ifs*15 0.33 TCGA-VQ-A924-01 6 39893472 39893472 C T MOCS1 Missense_Mutation p.R123Q 0.38 deleterious(0.01) benign(0.366) TCGA-VQ-A924-01 6 41712426 41712426 G A PGC Silent p.S60S 0.27 TCGA-VQ-A924-01 6 42237006 42237006 C A TRERF1 Missense_Mutation p.W108L 0.33 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-VQ-A924-01 6 44144683 44144683 C T CAPN11 Silent p.Y395Y 0.26 TCGA-VQ-A924-01 6 44144714 44144714 G - CAPN11 Frame_Shift_Del p.G407Afs*42 0.22 TCGA-VQ-A924-01 6 45514759 45514759 G A RUNX2 Missense_Mutation p.G428D 0.34 deleterious(0) probably_damaging(1) TCGA-VQ-A924-01 6 45882047 45882047 T C CLIC5 Missense_Mutation p.K328R 0.28 tolerated(0.15) benign(0.017) TCGA-VQ-A924-01 6 50683234 50683234 A G TFAP2D Missense_Mutation p.S149G 0.25 tolerated(0.35) benign(0.015) TCGA-VQ-A924-01 6 51875151 51875151 C T PKHD1 Missense_Mutation p.V1903I 0.27 deleterious(0.02) benign(0.048) TCGA-VQ-A924-01 6 54013894 54013894 T C MLIP Missense_Mutation p.I218T 0.23 deleterious(0) probably_damaging(0.936) TCGA-VQ-A924-01 6 55198599 55198599 G A GFRAL Missense_Mutation p.C58Y 0.24 deleterious(0) probably_damaging(0.986) TCGA-VQ-A924-01 6 64415953 64415953 A - PHF3 Frame_Shift_Del p.V1137* 0.21 TCGA-VQ-A924-01 6 64423226 64423226 T C PHF3 Silent p.N1914N 0.25 TCGA-VQ-A924-01 6 69349214 69349214 A G BAI3 Missense_Mutation p.N216S 0.18 tolerated(0.8) benign(0.001) TCGA-VQ-A924-01 6 70500211 70500211 T C LMBRD1 Missense_Mutation p.K75E 0.27 deleterious(0) probably_damaging(1) TCGA-VQ-A924-01 6 70916893 70916893 G A COL19A1 Missense_Mutation p.G1115D 0.32 deleterious(0) probably_damaging(1) TCGA-VQ-A924-01 6 70993480 70993480 G T COL9A1 Missense_Mutation p.P247H 0.35 unknown(0) TCGA-VQ-A924-01 6 71235851 71235851 G A FAM135A Missense_Mutation p.G1022S 0.21 tolerated(0.17) benign(0.003) TCGA-VQ-A924-01 6 71269492 71269492 C A FAM135A Silent p.R1472R 0.31 TCGA-VQ-A924-01 6 72967930 72967930 G A RIMS1 Missense_Mutation p.R958H 0.22 deleterious(0) probably_damaging(0.997) TCGA-VQ-A924-01 6 73000432 73000432 C A RIMS1 Missense_Mutation p.T1202N 0.20 deleterious(0.04) benign(0.135) TCGA-VQ-A924-01 6 74171523 74171523 T - MTO1 5'UTR 0.21 TCGA-VQ-A924-01 6 74502433 74502433 T G CD109 Missense_Mutation p.F929C 0.28 deleterious(0) probably_damaging(0.999) TCGA-VQ-A924-01 6 7580846 7580846 A C DSP Missense_Mutation p.T1475P 0.36 benign(0.011) TCGA-VQ-A924-01 6 75862102 75862102 A G COL12A1 Missense_Mutation p.F1221S 0.18 benign(0.015) TCGA-VQ-A924-01 6 76572366 76572366 C T MYO6 Missense_Mutation p.R534C 0.33 deleterious(0) unknown(0) TCGA-VQ-A924-01 6 78172573 78172573 G A HTR1B Missense_Mutation p.P183L 0.19 deleterious(0) probably_damaging(0.998) TCGA-VQ-A924-01 6 7904823 7904823 C - TXNDC5 Frame_Shift_Del p.V133Cfs*7 0.19 TCGA-VQ-A924-01 6 83869528 83869528 T C DOPEY1 Missense_Mutation p.S2271P 0.24 tolerated(0.14) probably_damaging(0.92) TCGA-VQ-A924-01 6 86243369 86243369 T - SNX14 Frame_Shift_Del p.E587Kfs*41 0.18 TCGA-VQ-A924-01 6 87966021 87966021 A - ZNF292 Frame_Shift_Del p.S893Afs*7 0.21 TCGA-VQ-A924-01 6 90457134 90457134 C T MDN1 Missense_Mutation p.R1273H 0.33 probably_damaging(1) TCGA-VQ-A924-01 6 91254280 91254280 C T MAP3K7 Missense_Mutation p.V428I 0.22 tolerated(0.5) benign(0) TCGA-VQ-A924-01 6 97562176 97562176 C T KLHL32 Missense_Mutation p.A382V 0.36 deleterious(0.01) probably_damaging(0.998) TCGA-VQ-A924-01 6 99283478 99283478 G A POU3F2 Silent p.P243P 0.27 TCGA-VQ-A924-01 7 100417218 100417218 C T EPHB4 Missense_Mutation p.V420I 0.23 tolerated(0.05) benign(0.001) TCGA-VQ-A924-01 7 100454655 100454655 C A SLC12A9 Missense_Mutation p.A205D 0.36 tolerated(0.22) possibly_damaging(0.515) TCGA-VQ-A924-01 7 100732112 100732113 - C TRIM56 Frame_Shift_Ins p.R509Pfs*18 0.18 TCGA-VQ-A924-01 7 101839973 101839974 - C CUX1 Frame_Shift_Ins p.P442Sfs*16 0.31 TCGA-VQ-A924-01 7 103234244 103234244 T - RELN Frame_Shift_Del p.N1266Mfs*12 0.20 TCGA-VQ-A924-01 7 103474002 103474002 G A RELN Missense_Mutation p.T152I 0.28 deleterious(0) benign(0.378) TCGA-VQ-A924-01 7 103805692 103805692 T - ORC5 Frame_Shift_Del p.K343Nfs*17 0.22 TCGA-VQ-A924-01 7 105894807 105894807 T C NAMPT Intron 0.27 TCGA-VQ-A924-01 7 107594123 107594123 C T LAMB1 Silent p.Q977Q 0.25 TCGA-VQ-A924-01 7 111368293 111368293 G A DOCK4 3'UTR 0.43 TCGA-VQ-A924-01 7 112407730 112407730 C T TMEM168 Missense_Mutation p.R539Q 0.27 deleterious(0) probably_damaging(0.996) TCGA-VQ-A924-01 7 121753677 121753677 C T AASS Missense_Mutation p.A381T 0.30 deleterious(0.04) possibly_damaging(0.728) TCGA-VQ-A924-01 7 123349162 123349162 A - WASL Frame_Shift_Del p.L78* 0.23 TCGA-VQ-A924-01 7 127669308 127669308 C T LRRC4 Silent p.T462T 0.30 TCGA-VQ-A924-01 7 128475494 128475494 C T FLNC Missense_Mutation p.A156V 0.15 deleterious(0.02) benign(0.001) TCGA-VQ-A924-01 7 129832524 129832524 T C TMEM209 Missense_Mutation p.D238G 0.24 deleterious(0.01) possibly_damaging(0.901) TCGA-VQ-A924-01 7 133861793 133861793 A C LRGUK Missense_Mutation p.K362T 0.23 deleterious(0.01) possibly_damaging(0.848) TCGA-VQ-A924-01 7 138333799 138333799 G A SVOPL Silent p.R206R 0.29 TCGA-VQ-A924-01 7 138968722 138968722 C T UBN2 Missense_Mutation p.T1024M 0.08 deleterious_low_confidence(0.04) benign(0.04) TCGA-VQ-A924-01 7 141734561 141734561 G T MGAM Nonsense_Mutation p.G627* 0.31 TCGA-VQ-A924-01 7 142045818 142045818 A G TRBV4-2 3'Flank 0.13 TCGA-VQ-A924-01 7 142571326 142571326 A G TRPV6 Missense_Mutation p.Y555H 0.39 tolerated(0.06) probably_damaging(0.981) TCGA-VQ-A924-01 7 143884164 143884167 TCTG - ARHGEF35 Frame_Shift_Del p.T437Sfs*16 0.37 TCGA-VQ-A924-01 7 146471404 146471404 G A CNTNAP2 Missense_Mutation p.A47T 0.13 deleterious(0.03) benign(0.077) TCGA-VQ-A924-01 7 146997373 146997373 T - CNTNAP2 Frame_Shift_Del p.F498Lfs*5 0.24 TCGA-VQ-A924-01 7 148544328 148544328 T C EZH2 Silent p.S21S 0.30 TCGA-VQ-A924-01 7 148876269 148876269 C A ZNF398 Silent p.R435R 0.28 TCGA-VQ-A924-01 7 149474083 149474083 G - ZNF467 5'Flank 0.24 TCGA-VQ-A924-01 7 149477436 149477436 A C SSPO RNA 0.44 TCGA-VQ-A924-01 7 150490195 150490195 G A TMEM176B Missense_Mutation p.A194V 0.23 tolerated(0.3) benign(0.016) TCGA-VQ-A924-01 7 151372597 151372597 G - PRKAG2 Frame_Shift_Del p.P198Rfs*56 0.23 TCGA-VQ-A924-01 7 151874013 151874013 T - KMT2C Frame_Shift_Del p.N2842Mfs*21 0.18 TCGA-VQ-A924-01 7 19744414 19744414 C T TWISTNB Silent p.G128G 0.24 TCGA-VQ-A924-01 7 2403339 2403339 C A EIF3B Missense_Mutation p.R315S 0.24 tolerated(0.5) benign(0.134) TCGA-VQ-A924-01 7 2472825 2472825 T C CHST12 Missense_Mutation p.V184A 0.24 tolerated(0.2) benign(0.402) TCGA-VQ-A924-01 7 26236434 26236435 - TTA HNRNPA2B1 In_Frame_Ins p.D167_K168insN 0.28 TCGA-VQ-A924-01 7 27147962 27147962 G - HOXA3 Frame_Shift_Del p.Q302Rfs*74 0.29 TCGA-VQ-A924-01 7 29070262 29070262 T - CPVL Frame_Shift_Del p.V418Ffs*24 0.23 TCGA-VQ-A924-01 7 38791862 38791862 C T VPS41 Missense_Mutation p.E614K 0.22 tolerated(0.88) possibly_damaging(0.783) TCGA-VQ-A924-01 7 39745753 39745753 C T RALA Missense_Mutation p.A177V 0.38 tolerated(0.2) benign(0.002) TCGA-VQ-A924-01 7 42005573 42005573 G - GLI3 Frame_Shift_Del p.P1033Rfs*46 0.29 TCGA-VQ-A924-01 7 44806214 44806214 G C ZMIZ2 Silent p.G869G 0.30 TCGA-VQ-A924-01 7 47440462 47440462 A G TNS3 Missense_Mutation p.F258S 0.22 deleterious(0) probably_damaging(0.997) TCGA-VQ-A924-01 7 4798682 4798682 G A FOXK1 Silent p.R415R 0.27 TCGA-VQ-A924-01 7 4830444 4830445 - C AP5Z1 Frame_Shift_Ins p.Q696Pfs*67 0.29 TCGA-VQ-A924-01 7 4845315 4845315 G A RADIL Silent p.P724P 0.14 TCGA-VQ-A924-01 7 50358660 50358660 G T IKZF1 Translation_Start_Site p.M1? 0.22 deleterious(0) benign(0.012) TCGA-VQ-A924-01 7 5567492 5567492 C T ACTB Missense_Mutation p.V339M 0.25 deleterious_low_confidence(0.01) benign(0.097) TCGA-VQ-A924-01 7 56022622 56022622 C A MRPS17 Silent p.T48T 0.22 TCGA-VQ-A924-01 7 57188408 57188408 C A ZNF479 Missense_Mutation p.E238D 0.14 tolerated(0.05) probably_damaging(0.99) TCGA-VQ-A924-01 7 6037030 6037030 G A PMS2 Nonsense_Mutation p.Q244* 0.23 TCGA-VQ-A924-01 7 71252681 71252681 G A CALN1 3'UTR 0.40 TCGA-VQ-A924-01 7 72178587 72178587 C T TYW1B Silent p.A80A 0.14 TCGA-VQ-A924-01 7 72850218 72850218 G T FZD9 3'UTR 0.33 TCGA-VQ-A924-01 7 73117263 73117263 G A STX1A Missense_Mutation p.T197M 0.25 deleterious(0) probably_damaging(0.995) TCGA-VQ-A924-01 7 74212239 74212239 G A GTF2IRD2 Missense_Mutation p.R538C 0.21 tolerated(0.1) probably_damaging(0.998) TCGA-VQ-A924-01 7 77975262 77975262 G C MAGI2 Missense_Mutation p.P401R 0.24 deleterious(0.01) probably_damaging(0.974) TCGA-VQ-A924-01 7 8153657 8153657 A C ICA1 Missense_Mutation p.S450A 0.22 tolerated(0.17) benign(0.141) TCGA-VQ-A924-01 7 86415682 86415682 C - GRM3 Frame_Shift_Del p.D194Tfs*23 0.23 TCGA-VQ-A924-01 7 88423546 88423546 T C C7orf62 Missense_Mutation p.I237M 0.31 tolerated(0.11) benign(0.192) TCGA-VQ-A924-01 7 91502949 91502949 T - MTERF Frame_Shift_Del p.R387Dfs*6 0.22 TCGA-VQ-A924-01 7 91603085 91603085 A - AKAP9 Frame_Shift_Del p.K39Rfs*17 0.24 TCGA-VQ-A924-01 7 91863902 91863902 G A KRIT1 Nonsense_Mutation p.R284* 0.35 TCGA-VQ-A924-01 7 92138661 92138661 A - PEX1 Frame_Shift_Del p.L551* 0.20 TCGA-VQ-A924-01 7 92764209 92764209 C T SAMD9L Missense_Mutation p.R359Q 0.32 tolerated(0.14) benign(0.011) TCGA-VQ-A924-01 7 94164702 94164702 T C CASD1 Missense_Mutation p.V237A 0.22 tolerated(0.09) benign(0.006) TCGA-VQ-A924-01 7 95045560 95045560 A - PON2 Frame_Shift_Del p.F65Lfs*5 0.35 TCGA-VQ-A924-01 7 99691649 99691649 G A MCM7 Intron 0.27 TCGA-VQ-A924-01 8 102213852 102213853 TA - ZNF706 Frame_Shift_Del p.T40Lfs*5 0.24 TCGA-VQ-A924-01 8 103289349 103289349 T - UBR5 Frame_Shift_Del p.E2121Kfs*28 0.23 TCGA-VQ-A924-01 8 109465325 109465325 G A EMC2 Missense_Mutation p.G85D 0.22 tolerated(0.36) benign(0.003) TCGA-VQ-A924-01 8 110980609 110980611 GTG - KCNV1 In_Frame_Del p.T404del 0.29 TCGA-VQ-A924-01 8 113316963 113316963 T C CSMD3 Silent p.R2751R 0.16 TCGA-VQ-A924-01 8 117784139 117784139 A C UTP23 3'UTR 0.26 TCGA-VQ-A924-01 8 121587419 121587419 A G SNTB1 Missense_Mutation p.L348P 0.05 deleterious(0.01) probably_damaging(0.992) TCGA-VQ-A924-01 8 125029888 125029888 A - FER1L6 Frame_Shift_Del p.K650Sfs*5 0.28 TCGA-VQ-A924-01 8 125989427 125989427 A - ZNF572 Frame_Shift_Del p.S308Afs*8 0.27 TCGA-VQ-A924-01 8 134145764 134145764 C - TG Frame_Shift_Del p.W2685Gfs*26 0.27 TCGA-VQ-A924-01 8 141381210 141381210 G A TRAPPC9 Missense_Mutation p.R500C 0.28 deleterious(0) probably_damaging(0.995) TCGA-VQ-A924-01 8 142178385 142178385 C T DENND3 Missense_Mutation p.T599M 0.27 tolerated(0.19) benign(0.017) TCGA-VQ-A924-01 8 143960489 143960489 G T CYP11B1 Silent p.A118A 0.42 TCGA-VQ-A924-01 8 144397957 144397957 C A TOP1MT Missense_Mutation p.R498M 0.28 tolerated(0.05) benign(0.017) TCGA-VQ-A924-01 8 144803823 144803823 C - MAPK15 Frame_Shift_Del p.L439* 0.22 TCGA-VQ-A924-01 8 144990774 144990774 G A PLEC Silent p.R4542R 0.29 TCGA-VQ-A924-01 8 145066494 145066494 G T GRINA Missense_Mutation p.G259C 0.18 deleterious(0) probably_damaging(0.999) TCGA-VQ-A924-01 8 145109979 145109979 G - OPLAH Frame_Shift_Del p.H788Tfs*31 0.40 TCGA-VQ-A924-01 8 145535738 145535738 G A HSF1 Missense_Mutation p.R317H 0.13 tolerated(0.14) benign(0.001) TCGA-VQ-A924-01 8 145947442 145947442 C A ZNF251 Nonsense_Mutation p.G535* 0.26 TCGA-VQ-A924-01 8 145998670 145998670 C A ZNF34 Missense_Mutation p.R555L 0.44 tolerated(0.1) benign(0.064) TCGA-VQ-A924-01 8 1497003 1497003 C - DLGAP2 Frame_Shift_Del p.R52Afs*15 0.39 TCGA-VQ-A924-01 8 1905026 1905026 G A ARHGEF10 Missense_Mutation p.G1211D 0.28 tolerated(0.09) benign(0.012) TCGA-VQ-A924-01 8 22548793 22548793 C T EGR3 Silent p.A119A 0.20 TCGA-VQ-A924-01 8 23185968 23185968 C T LOXL2 Silent p.S359S 0.35 TCGA-VQ-A924-01 8 25182889 25182889 A - DOCK5 Frame_Shift_Del p.M579Wfs*8 0.26 TCGA-VQ-A924-01 8 25253164 25253164 C - DOCK5 Frame_Shift_Del p.H1545Tfs*45 0.12 TCGA-VQ-A924-01 8 27634491 27634491 G A ESCO2 Silent p.S222S 0.44 TCGA-VQ-A924-01 8 30436468 30436468 C A GTF2E2 Missense_Mutation p.K282N 0.32 deleterious(0.01) possibly_damaging(0.467) TCGA-VQ-A924-01 8 30999110 30999110 G A WRN Silent p.T1044T 0.18 TCGA-VQ-A924-01 8 3245168 3245168 C T CSMD1 Missense_Mutation p.G877D 0.19 probably_damaging(0.98) TCGA-VQ-A924-01 8 32505335 32505335 G T NRG1 Intron 0.27 TCGA-VQ-A924-01 8 3432474 3432474 G T CSMD1 Missense_Mutation p.P446Q 0.21 possibly_damaging(0.883) TCGA-VQ-A924-01 8 36763225 36763225 G T KCNU1 Splice_Site p.X670_splice 0.27 TCGA-VQ-A924-01 8 37692820 37692820 C - GPR124 Frame_Shift_Del p.P581Hfs*111 0.33 TCGA-VQ-A924-01 8 41553999 41553999 G A ANK1 Missense_Mutation p.R989C 0.15 deleterious(0) probably_damaging(0.999) TCGA-VQ-A924-01 8 41554077 41554077 G A ANK1 Missense_Mutation p.R963W 0.18 deleterious(0) probably_damaging(0.998) TCGA-VQ-A924-01 8 42275227 42275227 G A SLC20A2 3'UTR 0.38 TCGA-VQ-A924-01 8 49986874 49986874 A G C8orf22 Missense_Mutation p.K72R 0.25 deleterious(0.01) benign(0.442) TCGA-VQ-A924-01 8 53569707 53569707 T - RB1CC1 Frame_Shift_Del p.K894Nfs*2 0.19 TCGA-VQ-A924-01 8 54684584 54684584 A G ATP6V1H Silent p.L338L 0.22 TCGA-VQ-A924-01 8 56436344 56436344 T - XKR4 Frame_Shift_Del p.F505Lfs*3 0.21 TCGA-VQ-A924-01 8 57025777 57025777 G A MOS Silent p.G255G 0.35 TCGA-VQ-A924-01 8 61654236 61654236 T C CHD7 Missense_Mutation p.L82P 0.25 possibly_damaging(0.766) TCGA-VQ-A924-01 8 61778249 61778249 G A CHD7 Silent p.T2917T 0.22 TCGA-VQ-A924-01 8 66988991 66988991 C T DNAJC5B Silent p.T72T 0.32 TCGA-VQ-A924-01 8 71068602 71068605 TTTG - NCOA2 Frame_Shift_Del p.N665Kfs*41 0.29 TCGA-VQ-A924-01 8 86057678 86057678 A - LRRCC1 Frame_Shift_Del p.T1013Qfs*13 0.30 TCGA-VQ-A924-01 8 90782121 90782121 A - RIPK2 Frame_Shift_Del p.K203Nfs*36 0.26 TCGA-VQ-A924-01 8 95262626 95262626 C T GEM Missense_Mutation p.R268H 0.22 deleterious(0.05) probably_damaging(0.997) TCGA-VQ-A924-01 8 9567544 9567544 A - TNKS Frame_Shift_Del p.N555Ifs*5 0.23 TCGA-VQ-A924-01 8 97307470 97307470 T C PTDSS1 Missense_Mutation p.W196R 0.19 deleterious(0) probably_damaging(1) TCGA-VQ-A924-01 9 100971424 100971424 T G TBC1D2 Missense_Mutation p.K559T 0.29 deleterious(0) benign(0.086) TCGA-VQ-A924-01 9 100983191 100983191 G - TBC1D2 Frame_Shift_Del p.P433Lfs*16 0.23 TCGA-VQ-A924-01 9 101536176 101536176 C T ANKS6 Missense_Mutation p.G602S 0.36 tolerated(1) benign(0.001) TCGA-VQ-A924-01 9 102590549 102590549 C T NR4A3 Silent p.C86C 0.32 TCGA-VQ-A924-01 9 103204256 103204258 CTT - MSANTD3 In_Frame_Del p.F13del 0.26 TCGA-VQ-A924-01 9 104075219 104075219 C T LPPR1 Missense_Mutation p.A259V 0.23 tolerated(0.08) benign(0.132) TCGA-VQ-A924-01 9 104356925 104356925 C - PPP3R2 Frame_Shift_Del p.R96Sfs*24 0.21 TCGA-VQ-A924-01 9 104375717 104375717 G A GRIN3A Missense_Mutation p.L903F 0.27 deleterious(0.02) probably_damaging(1) TCGA-VQ-A924-01 9 107623880 107623880 G T ABCA1 Intron 0.14 TCGA-VQ-A924-01 9 108366600 108366600 C T FKTN Silent p.I158I 0.34 TCGA-VQ-A924-01 9 112168787 112168787 G A PTPN3 Missense_Mutation p.R583W 0.25 deleterious(0.01) probably_damaging(1) TCGA-VQ-A924-01 9 112211091 112211091 C A PTPN3 Missense_Mutation p.R138M 0.31 deleterious(0) probably_damaging(1) TCGA-VQ-A924-01 9 113562979 113562979 T - MUSK Frame_Shift_Del p.Y776Ifs*92 0.18 TCGA-VQ-A924-01 9 114303975 114303975 A G ZNF483 Missense_Mutation p.R254G 0.24 tolerated(0.32) benign(0.152) TCGA-VQ-A924-01 9 114325488 114325488 A G PTGR1 Silent p.Y301Y 0.39 TCGA-VQ-A924-01 9 115652527 115652527 T C SLC46A2 Silent p.L145L 0.17 TCGA-VQ-A924-01 9 115818952 115818952 C T ZFP37 Missense_Mutation p.G6D 0.28 tolerated_low_confidence(0.07) benign(0.081) TCGA-VQ-A924-01 9 119097324 119097325 - G PAPPA Frame_Shift_Ins p.E1196Gfs*16 0.16 TCGA-VQ-A924-01 9 119413950 119413950 A G ASTN2 Missense_Mutation p.C926R 0.27 deleterious(0) unknown(0) TCGA-VQ-A924-01 9 121929282 121929282 T - BRINP1 3'UTR 0.20 TCGA-VQ-A924-01 9 123914741 123914741 T - CNTRL Intron 0.21 TCGA-VQ-A924-01 9 123924479 123924479 T C CNTRL Silent p.L1785L 0.27 TCGA-VQ-A924-01 9 124936972 124936972 G A MORN5 Intron 0.23 TCGA-VQ-A924-01 9 125154645 125154645 C T PTGS1 Missense_Mutation p.P541L 0.17 deleterious(0) probably_damaging(1) TCGA-VQ-A924-01 9 125563075 125563075 C T OR1K1 Missense_Mutation p.A225V 0.26 tolerated(0.06) benign(0.012) TCGA-VQ-A924-01 9 129595266 129595266 G - ZBTB43 Frame_Shift_Del p.G161Vfs*11 0.25 TCGA-VQ-A924-01 9 130230084 130230084 G A LRSAM1 Silent p.A198A 0.43 TCGA-VQ-A924-01 9 131190610 131190610 C T CERCAM Missense_Mutation p.R266C 0.31 tolerated(0.17) probably_damaging(0.953) TCGA-VQ-A924-01 9 131586369 131586369 G A C9orf114 Missense_Mutation p.A299V 0.27 tolerated(0.58) benign(0.01) TCGA-VQ-A924-01 9 131597832 131597832 G T CCBL1 Missense_Mutation p.L324I 0.28 deleterious(0.02) benign(0.2) TCGA-VQ-A924-01 9 135073713 135073713 C T NTNG2 Missense_Mutation p.R192C 0.39 deleterious(0) probably_damaging(0.993) TCGA-VQ-A924-01 9 135458586 135458586 G A BARHL1 Silent p.A134A 0.32 TCGA-VQ-A924-01 9 135947135 135947135 C T CEL Missense_Mutation p.A752V 0.20 tolerated_low_confidence(1) benign(0) TCGA-VQ-A924-01 9 136287477 136287477 G T ADAMTS13 5'UTR 0.28 TCGA-VQ-A924-01 9 137645738 137645738 G A COL5A1 Missense_Mutation p.V588M 0.07 benign(0.02) TCGA-VQ-A924-01 9 137703214 137703214 C - COL5A1 Frame_Shift_Del p.I1188Sfs*88 0.25 TCGA-VQ-A924-01 9 139265441 139265441 C T CARD9 Missense_Mutation p.R160H 0.29 deleterious(0.01) benign(0.232) TCGA-VQ-A924-01 9 139273679 139273679 G A SNAPC4 Missense_Mutation p.A867V 0.21 tolerated(0.28) benign(0.002) TCGA-VQ-A924-01 9 139404245 139404245 G A NOTCH1 Missense_Mutation p.T970I 0.26 deleterious(0.02) probably_damaging(0.961) TCGA-VQ-A924-01 9 139639682 139639682 C T LCN6 Missense_Mutation p.A118T 0.30 deleterious(0) probably_damaging(0.998) TCGA-VQ-A924-01 9 139752983 139752983 C A MAMDC4 Missense_Mutation p.L936M 0.38 deleterious(0.03) probably_damaging(0.992) TCGA-VQ-A924-01 9 139911381 139911381 C T ABCA2 Missense_Mutation p.V917M 0.23 deleterious(0) probably_damaging(0.999) TCGA-VQ-A924-01 9 139913693 139913693 C T ABCA2 Silent p.S497S 0.19 TCGA-VQ-A924-01 9 139925272 139925272 C T FUT7 Missense_Mutation p.V307M 0.32 deleterious(0) possibly_damaging(0.748) TCGA-VQ-A924-01 9 140006645 140006645 G A DPP7 Silent p.Y323Y 0.40 TCGA-VQ-A924-01 9 140166584 140166584 C T NELFB Missense_Mutation p.T466M 0.25 deleterious(0.05) benign(0.179) TCGA-VQ-A924-01 9 140442112 140442112 C A PNPLA7 Splice_Site p.X11_splice 0.34 TCGA-VQ-A924-01 9 140481542 140481542 C - ZMYND19 Frame_Shift_Del p.G79Afs*14 0.26 TCGA-VQ-A924-01 9 140508544 140508544 G A ARRDC1 Missense_Mutation p.V166M 0.31 deleterious(0.03) probably_damaging(0.932) TCGA-VQ-A924-01 9 14823231 14823231 T G FREM1 Missense_Mutation p.N755T 0.23 deleterious(0) probably_damaging(0.933) TCGA-VQ-A924-01 9 21217139 21217139 T C IFNA16 Missense_Mutation p.R56G 0.25 deleterious(0.01) possibly_damaging(0.806) TCGA-VQ-A924-01 9 21409392 21409392 A G IFNA8 Missense_Mutation p.K73E 0.26 tolerated(0.19) benign(0.102) TCGA-VQ-A924-01 9 23692710 23692710 G A ELAVL2 Missense_Mutation p.R309C 0.20 deleterious(0.02) probably_damaging(0.92) TCGA-VQ-A924-01 9 2718198 2718198 C T KCNV2 Silent p.R153R 0.18 TCGA-VQ-A924-01 9 32635093 32635093 G - TAF1L Frame_Shift_Del p.P162Rfs*4 0.13 TCGA-VQ-A924-01 9 33469280 33469280 G A NOL6 Missense_Mutation p.R263C 0.32 deleterious(0) probably_damaging(0.959) TCGA-VQ-A924-01 9 33473789 33473789 C A NOL6 Nonsense_Mutation p.E18* 0.38 TCGA-VQ-A924-01 9 34250753 34250753 A - UBAP1 Frame_Shift_Del p.K520Rfs*2 0.19 TCGA-VQ-A924-01 9 34254488 34254488 C T KIF24 Missense_Mutation p.E1333K 0.30 deleterious(0.02) possibly_damaging(0.45) TCGA-VQ-A924-01 9 34371689 34371689 C T KIAA1161 Missense_Mutation p.R384Q 0.30 tolerated(0.4) benign(0.073) TCGA-VQ-A924-01 9 34372132 34372132 G - KIAA1161 Frame_Shift_Del p.A237Pfs*9 0.28 TCGA-VQ-A924-01 9 34658609 34658609 C T IL11RA Missense_Mutation p.P247S 0.16 deleterious(0.02) possibly_damaging(0.839) TCGA-VQ-A924-01 9 35717289 35717289 G A TLN1 Missense_Mutation p.A771V 0.25 deleterious(0) possibly_damaging(0.689) TCGA-VQ-A924-01 9 37919978 37919978 A G SHB Missense_Mutation p.M457T 0.25 deleterious(0) probably_damaging(0.988) TCGA-VQ-A924-01 9 5304509 5304509 C A RLN2 Silent p.A24A 0.19 TCGA-VQ-A924-01 9 5810111 5810112 GA - ERMP1 Frame_Shift_Del p.S483Mfs*3 0.19 TCGA-VQ-A924-01 9 711091 711091 G A KANK1 Missense_Mutation p.A109T 0.23 tolerated(0.33) benign(0.003) TCGA-VQ-A924-01 9 74300085 74300085 C T TMEM2 3'UTR 0.22 TCGA-VQ-A924-01 9 77683932 77683932 T C NMRK1 Missense_Mutation p.Q159R 0.25 deleterious(0.02) benign(0.002) TCGA-VQ-A924-01 9 79890427 79890428 - T VPS13A Frame_Shift_Ins p.D845* 0.22 TCGA-VQ-A924-01 9 80049310 80049313 CTCC - GNA14 Frame_Shift_Del p.R145Sfs*12 0.32 TCGA-VQ-A924-01 9 80262655 80262655 C T GNA14 Missense_Mutation p.A19T 0.35 deleterious(0.04) benign(0.105) TCGA-VQ-A924-01 9 82323548 82323548 T C TLE4 Silent p.Y370Y 0.30 TCGA-VQ-A924-01 9 82333698 82333698 G A TLE4 Missense_Mutation p.A468T 0.23 deleterious(0) possibly_damaging(0.488) TCGA-VQ-A924-01 9 84531766 84531766 G A SPATA31D5P RNA 0.24 TCGA-VQ-A924-01 9 88631566 88631566 A - NAA35 Frame_Shift_Del p.T563Qfs*10 0.19 TCGA-VQ-A924-01 9 90321440 90321440 C A DAPK1 Missense_Mutation p.L1152M 0.31 deleterious(0.02) benign(0.387) TCGA-VQ-A924-01 9 92001360 92001360 G A SEMA4D Silent p.H456H 0.22 TCGA-VQ-A924-01 9 94486742 94486742 G A ROR2 Silent p.Y678Y 0.14 TCGA-VQ-A924-01 9 95076597 95076597 T - NOL8 Frame_Shift_Del p.A771Qfs*53 0.18 TCGA-VQ-A924-01 9 95482777 95482777 A G BICD2 Silent p.A289A 0.25 TCGA-VQ-A924-01 9 95841866 95841866 A G SUSD3 Missense_Mutation p.D180G 0.10 tolerated(0.08) benign(0.335) TCGA-VQ-A924-01 9 97041051 97041051 C T ZNF169 5'UTR 0.21 TCGA-VQ-A924-01 9 97207292 97207292 G A HIATL1 Missense_Mutation p.G186E 0.28 deleterious(0) probably_damaging(1) TCGA-VQ-A924-01 X 100511153 100511153 C T DRP2 Missense_Mutation p.R765W 0.14 deleterious(0) possibly_damaging(0.857) TCGA-VQ-A924-01 X 102842295 102842295 G A TCEAL4 3'UTR 0.67 TCGA-VQ-A924-01 X 106046065 106046065 G - TBC1D8B 5'UTR 0.37 TCGA-VQ-A924-01 X 106841326 106841326 G T FRMPD3 Silent p.L772L 0.23 TCGA-VQ-A924-01 X 107978821 107978821 C T IRS4 Missense_Mutation p.G252S 0.60 deleterious(0) probably_damaging(1) TCGA-VQ-A924-01 X 108887299 108887299 G T ACSL4 Missense_Mutation p.H699N 0.51 deleterious(0.03) probably_damaging(0.98) TCGA-VQ-A924-01 X 123538967 123538967 C T TENM1 Missense_Mutation p.G1769R 0.07 tolerated(0.09) benign(0.003) TCGA-VQ-A924-01 X 125299150 125299150 A G DCAF12L2 Missense_Mutation p.I253T 0.33 deleterious(0.02) possibly_damaging(0.691) TCGA-VQ-A924-01 X 129190011 129190011 C - BCORL1 Frame_Shift_Del p.P1681Qfs*20 0.33 TCGA-VQ-A924-01 X 132160737 132160737 G T USP26 Silent p.S504S 0.48 TCGA-VQ-A924-01 X 142717438 142717438 G A SLITRK4 Missense_Mutation p.A496V 0.50 tolerated(0.52) benign(0.001) TCGA-VQ-A924-01 X 153006044 153006044 G T ABCD1 Missense_Mutation p.G551C 0.51 deleterious(0) probably_damaging(1) TCGA-VQ-A924-01 X 154290078 154290078 T A CMC4 3'UTR 0.45 TCGA-VQ-A924-01 X 154741391 154741391 T C TMLHE Missense_Mutation p.Y234C 0.48 deleterious(0) probably_damaging(0.999) TCGA-VQ-A924-01 X 1584470 1584470 C A P2RY8 Missense_Mutation p.A328S 0.23 deleterious(0.05) benign(0.396) TCGA-VQ-A924-01 X 1712693 1712693 G A AKAP17A Missense_Mutation p.R113H 0.25 tolerated(0.07) benign(0.336) TCGA-VQ-A924-01 X 17165605 17165605 C - REPS2 3'UTR 0.38 TCGA-VQ-A924-01 X 1718209 1718209 G T AKAP17A Missense_Mutation p.A346S 0.32 tolerated(0.11) unknown(0) TCGA-VQ-A924-01 X 19377711 19377711 C T PDHA1 Silent p.S409S 0.52 TCGA-VQ-A924-01 X 19379586 19379586 A G PDHA1 3'UTR 0.55 TCGA-VQ-A924-01 X 21550101 21550101 G A CNKSR2 Missense_Mutation p.E407K 0.43 deleterious(0.03) benign(0.442) TCGA-VQ-A924-01 X 23018274 23018274 G T DDX53 Missense_Mutation p.G34C 0.55 deleterious_low_confidence(0.01) possibly_damaging(0.88) TCGA-VQ-A924-01 X 23411535 23411535 A - PTCHD1 Frame_Shift_Del p.K635Nfs*8 0.33 TCGA-VQ-A924-01 X 27998854 27998854 T C DCAF8L1 Missense_Mutation p.S200G 0.29 deleterious(0) benign(0.02) TCGA-VQ-A924-01 X 2873517 2873517 C T ARSE Missense_Mutation p.A83T 0.56 deleterious(0) probably_damaging(0.976) TCGA-VQ-A924-01 X 30269518 30269518 A G MAGEB1 Missense_Mutation p.H303R 0.57 tolerated(0.25) benign(0.009) TCGA-VQ-A924-01 X 3241075 3241075 A G MXRA5 Missense_Mutation p.L884P 0.52 tolerated(0.22) benign(0.007) TCGA-VQ-A924-01 X 39934127 39934127 T - BCOR Frame_Shift_Del p.S158Vfs*3 0.42 TCGA-VQ-A924-01 X 47435937 47435937 C T SYN1 Missense_Mutation p.V314M 0.53 deleterious(0) possibly_damaging(0.86) TCGA-VQ-A924-01 X 47835535 47835535 G A ZNF182 3'UTR 0.55 TCGA-VQ-A924-01 X 47979008 47979008 G A SSX6 RNA 0.63 TCGA-VQ-A924-01 X 48206934 48206934 C T SSX3 Splice_Site 0.51 TCGA-VQ-A924-01 X 48558904 48558904 G - SUV39H1 Frame_Shift_Del p.A198Rfs*140 0.36 TCGA-VQ-A924-01 X 49958952 49958952 G A AKAP4 Missense_Mutation p.H138Y 0.49 tolerated(0.26) possibly_damaging(0.742) TCGA-VQ-A924-01 X 53268413 53268413 G - IQSEC2 Frame_Shift_Del p.L1027Sfs*75 0.23 TCGA-VQ-A924-01 X 54275502 54275502 C T WNK3 Silent p.L1093L 0.45 TCGA-VQ-A924-01 X 55650586 55650587 - C FOXR2 Frame_Shift_Ins p.S150Qfs*2 0.32 TCGA-VQ-A924-01 X 5811637 5811637 C T NLGN4X Missense_Mutation p.A558T 0.48 tolerated(0.16) possibly_damaging(0.829) TCGA-VQ-A924-01 X 67939146 67939146 G A STARD8 Missense_Mutation p.A599T 0.67 deleterious(0) possibly_damaging(0.89) TCGA-VQ-A924-01 X 68725612 68725612 G A FAM155B Missense_Mutation p.A163T 0.65 tolerated(0.25) probably_damaging(0.981) TCGA-VQ-A924-01 X 70127618 70127618 A - TEX11 5'UTR 0.62 TCGA-VQ-A924-01 X 7177444 7177444 C T STS Missense_Mutation p.P151L 0.56 deleterious(0.01) probably_damaging(0.942) TCGA-VQ-A924-01 X 71830993 71830993 G A PHKA1 Missense_Mutation p.A804V 0.57 tolerated(1) benign(0.001) TCGA-VQ-A924-01 X 73812292 73812292 A - RLIM Frame_Shift_Del p.F286Lfs*34 0.38 TCGA-VQ-A924-01 X 73960199 73960199 A T KIAA2022 Missense_Mutation p.V1398E 0.17 tolerated(0.85) benign(0.135) TCGA-VQ-A924-01 X 9622321 9622321 A G TBL1X Missense_Mutation p.D57G 0.54 deleterious(0.01) possibly_damaging(0.9) TCGA-VQ-A924-01 Y 21901482 21901482 G - KDM5D Frame_Shift_Del p.R198Dfs*36 0.57 TCGA-VQ-A924-01 Y 7235434 7235434 G A PRKY RNA 0.44 TCGA-VQ-A925-01 10 21823602 21823602 T C MLLT10 Missense_Mutation p.L10P 0.55 tolerated(0.06) probably_damaging(0.952) TCGA-VQ-A925-01 10 42947110 42947110 G A CCNYL2 RNA 0.23 TCGA-VQ-A925-01 10 50531945 50531945 C G C10orf71 Missense_Mutation p.P452R 0.28 deleterious(0.02) possibly_damaging(0.519) TCGA-VQ-A925-01 10 56367717 56367717 T C PCDH15 Intron 0.39 TCGA-VQ-A925-01 10 69565384 69565384 C T DNAJC12 Silent p.K153K 0.06 TCGA-VQ-A925-01 10 91478543 91478543 A G KIF20B Missense_Mutation p.I450V 0.34 tolerated(0.94) probably_damaging(0.949) TCGA-VQ-A925-01 11 103006457 103006457 G A DYNC2H1 Missense_Mutation p.R785Q 0.24 benign(0.006) TCGA-VQ-A925-01 11 124794787 124794787 G A HEPACAM Silent p.I88I 0.32 TCGA-VQ-A925-01 11 14991561 14991561 G A CALCA Silent p.L49L 0.17 TCGA-VQ-A925-01 11 18736128 18736128 C T IGSF22 Silent p.A525A 0.19 TCGA-VQ-A925-01 11 35828009 35828009 G A TRIM44 3'UTR 0.43 TCGA-VQ-A925-01 11 48346846 48346846 T C OR4C3 Silent p.S118S 0.15 TCGA-VQ-A925-01 11 55135964 55135964 T G OR4A15 Missense_Mutation p.I202S 0.11 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-VQ-A925-01 11 57146982 57146982 A G PRG3 Silent p.T120T 0.10 TCGA-VQ-A925-01 11 61647565 61647565 A C FADS3 Missense_Mutation p.L91R 0.52 deleterious(0) probably_damaging(1) TCGA-VQ-A925-01 11 64875178 64875178 G A VPS51 Missense_Mutation p.E162K 0.83 tolerated(0.19) benign(0.038) TCGA-VQ-A925-01 11 72295249 72295249 G T PDE2A Missense_Mutation p.A549D 0.56 tolerated(0.08) possibly_damaging(0.733) TCGA-VQ-A925-01 11 75590968 75590968 C G UVRAG Missense_Mutation p.L106V 0.25 tolerated(0.21) possibly_damaging(0.627) TCGA-VQ-A925-01 11 76814125 76814125 C T OMP Silent p.I80I 0.50 TCGA-VQ-A925-01 11 77885298 77885298 C A KCTD21 Silent p.V101V 0.32 TCGA-VQ-A925-01 11 89531678 89531678 T G TRIM49 Missense_Mutation p.S327R 0.15 tolerated(0.18) benign(0.025) TCGA-VQ-A925-01 11 89774338 89774338 A C TRIM49C Missense_Mutation p.S327R 0.25 tolerated(0.19) benign(0.01) TCGA-VQ-A925-01 11 92087246 92087246 T C FAT3 Silent p.T656T 0.48 TCGA-VQ-A925-01 12 21998650 21998650 T C ABCC9 Missense_Mutation p.I995V 0.29 tolerated(0.73) benign(0.002) TCGA-VQ-A925-01 12 27064138 27064138 C T ASUN Missense_Mutation p.E640K 0.10 tolerated(0.64) benign(0.009) TCGA-VQ-A925-01 12 52162792 52162792 G T SCN8A Silent p.V1015V 0.71 TCGA-VQ-A925-01 12 57573600 57573600 G A LRP1 Missense_Mutation p.V1668I 0.70 benign(0.012) TCGA-VQ-A925-01 12 6981586 6981586 C G SPSB2 Missense_Mutation p.Q160H 0.54 tolerated(0.15) benign(0) TCGA-VQ-A925-01 12 73046900 73046900 A C TRHDE Missense_Mutation p.K938T 0.15 deleterious(0.02) possibly_damaging(0.702) TCGA-VQ-A925-01 12 9318768 9318768 A C PZP Missense_Mutation p.V713G 0.21 tolerated(0.46) benign(0) TCGA-VQ-A925-01 13 70281861 70281861 C A KLHL1 Missense_Mutation p.V695F 0.21 deleterious(0) probably_damaging(0.98) TCGA-VQ-A925-01 14 26917334 26917334 C A NOVA1 Missense_Mutation p.G452V 0.53 deleterious(0) probably_damaging(0.999) TCGA-VQ-A925-01 14 44974986 44974986 T A FSCB Missense_Mutation p.E402V 0.29 deleterious(0) probably_damaging(0.991) TCGA-VQ-A925-01 15 100692849 100692849 C G ADAMTS17 Missense_Mutation p.G481R 0.36 deleterious(0) probably_damaging(1) TCGA-VQ-A925-01 15 33855184 33855184 T G RYR3 Silent p.T373T 0.35 TCGA-VQ-A925-01 15 37242559 37242559 C G MEIS2 Missense_Mutation p.D315H 0.34 deleterious(0) probably_damaging(0.989) TCGA-VQ-A925-01 15 41766857 41766857 T C RTF1 Missense_Mutation p.Y415H 0.26 deleterious(0) probably_damaging(1) TCGA-VQ-A925-01 15 42455550 42455550 C G VPS39 Missense_Mutation p.D725H 0.34 deleterious(0) possibly_damaging(0.645) TCGA-VQ-A925-01 15 48063628 48063628 T G SEMA6D Silent p.T956T 0.37 TCGA-VQ-A925-01 15 64275944 64275944 A C DAPK2 Missense_Mutation p.F34L 0.21 deleterious(0) probably_damaging(0.988) TCGA-VQ-A925-01 15 88669594 88669594 G T NTRK3 Missense_Mutation p.A435E 0.31 deleterious(0.01) probably_damaging(0.933) TCGA-VQ-A925-01 16 10851877 10851877 C G NUBP1 Missense_Mutation p.T200S 0.28 deleterious(0.04) possibly_damaging(0.681) TCGA-VQ-A925-01 16 28507962 28507962 G C APOBR Missense_Mutation p.G534R 0.33 tolerated(0.14) probably_damaging(0.979) TCGA-VQ-A925-01 16 30199720 30199720 A G CORO1A Silent p.A368A 0.44 TCGA-VQ-A925-01 16 65005544 65005544 A C CDH11 Missense_Mutation p.F527C 0.29 deleterious(0) possibly_damaging(0.594) TCGA-VQ-A925-01 16 71319028 71319028 G C CMTR2 Missense_Mutation p.L266V 0.12 deleterious(0) probably_damaging(1) TCGA-VQ-A925-01 16 72146452 72146452 C A DHX38 3'UTR 0.31 TCGA-VQ-A925-01 17 16455868 16455868 G C ZNF287 Missense_Mutation p.H530D 0.47 deleterious(0) probably_damaging(0.982) TCGA-VQ-A925-01 17 40719660 40719660 C A MLX Missense_Mutation p.N76K 0.07 tolerated(0.05) benign(0.075) TCGA-VQ-A925-01 17 6358835 6358835 G A PITPNM3 Silent p.F916F 0.14 TCGA-VQ-A925-01 17 72368199 72368199 G A GPR142 Silent p.L283L 0.10 TCGA-VQ-A925-01 17 7577543 7577543 C T TP53 Missense_Mutation p.M246I 0.30 deleterious(0) possibly_damaging(0.811) TCGA-VQ-A925-01 17 7578175 7578176 - CCTCAGG TP53 Splice_Site p.X223_splice 0.43 TCGA-VQ-A925-01 17 76046188 76046188 C G TNRC6C Missense_Mutation p.Q349E 0.29 tolerated(0.06) probably_damaging(0.992) TCGA-VQ-A925-01 17 80059485 80059485 C T FASN 5'Flank 0.53 TCGA-VQ-A925-01 18 71740658 71740658 T G FBXO15 3'UTR 0.53 TCGA-VQ-A925-01 18 8085827 8085827 T C PTPRM Silent p.G570G 0.62 TCGA-VQ-A925-01 19 1221260 1221260 C G STK11 Nonsense_Mutation p.Y261* 0.70 TCGA-VQ-A925-01 19 20228702 20228702 A C ZNF90 Missense_Mutation p.L113F 0.52 tolerated(0.11) benign(0.063) TCGA-VQ-A925-01 19 38190196 38190196 T G ZNF607 Missense_Mutation p.K279T 0.68 deleterious(0.01) probably_damaging(0.997) TCGA-VQ-A925-01 19 8601231 8601231 G A MYO1F Missense_Mutation p.R650C 0.34 deleterious(0) benign(0.22) TCGA-VQ-A925-01 19 9073717 9073717 C T MUC16 Missense_Mutation p.A4577T 0.35 unknown(0) TCGA-VQ-A925-01 1 120299969 120299969 G A HMGCS2 Silent p.L315L 0.40 TCGA-VQ-A925-01 1 145323662 145323662 A C NBPF10 Missense_Mutation p.K1167Q 0.02 probably_damaging(0.992) TCGA-VQ-A925-01 1 152188261 152188261 G T HRNR Missense_Mutation p.S1948R 0.04 unknown(0) TCGA-VQ-A925-01 1 152191864 152191864 A T HRNR Silent p.G747G 0.09 TCGA-VQ-A925-01 1 155154488 155154488 C T TRIM46 Silent p.G583G 0.18 TCGA-VQ-A925-01 1 155717693 155717693 T A GON4L 3'Flank 0.09 TCGA-VQ-A925-01 1 158592949 158592949 G C SPTA1 Missense_Mutation p.Q1982E 0.19 deleterious(0.01) benign(0.257) TCGA-VQ-A925-01 1 158637697 158637697 A C SPTA1 Missense_Mutation p.S663R 0.50 tolerated(0.57) benign(0.008) TCGA-VQ-A925-01 1 158648296 158648296 T A SPTA1 Missense_Mutation p.Q236L 0.06 tolerated(0.25) benign(0.102) TCGA-VQ-A925-01 1 169551688 169551694 TTTTTCT - F5 Frame_Shift_Del p.K75Nfs*22 0.53 TCGA-VQ-A925-01 1 170695386 170695386 A C PRRX1 Missense_Mutation p.K148T 0.16 deleterious(0) probably_damaging(0.992) TCGA-VQ-A925-01 1 205883960 205883960 G A SLC26A9 3'UTR 0.54 TCGA-VQ-A925-01 1 210796897 210796897 C T HHAT Missense_Mutation p.R426C 0.39 deleterious(0.02) benign(0.329) TCGA-VQ-A925-01 1 21307589 21307589 C T EIF4G3 Silent p.L61L 0.30 TCGA-VQ-A925-01 1 24419509 24419509 C T MYOM3 Missense_Mutation p.E340K 0.35 deleterious(0) probably_damaging(0.962) TCGA-VQ-A925-01 1 245851179 245851179 G A KIF26B Missense_Mutation p.A1632T 0.55 tolerated(0.27) unknown(0) TCGA-VQ-A925-01 1 32678175 32678175 G A DCDC2B Silent p.E204E 0.23 TCGA-VQ-A925-01 1 39549882 39549882 G A MACF1 5'UTR 0.18 TCGA-VQ-A925-01 1 40766790 40766790 C A COL9A2 3'UTR 0.70 TCGA-VQ-A925-01 1 78047670 78047670 C G ZZZ3 Missense_Mutation p.D596H 0.36 deleterious(0.04) benign(0.267) TCGA-VQ-A925-01 1 79402044 79402044 A T ELTD1 Missense_Mutation p.H271Q 0.31 tolerated(0.98) benign(0.024) TCGA-VQ-A925-01 1 79411985 79411985 A G ELTD1 Missense_Mutation p.I100T 0.22 tolerated_low_confidence(0.42) benign(0.005) TCGA-VQ-A925-01 1 90400099 90400099 A T LRRC8D Missense_Mutation p.D491V 0.36 deleterious(0) probably_damaging(0.941) TCGA-VQ-A925-01 1 9781210 9781210 C A PIK3CD Missense_Mutation p.P572Q 0.43 deleterious(0) probably_damaging(0.991) TCGA-VQ-A925-01 1 97915764 97915764 C T DPYD Missense_Mutation p.V586I 0.31 deleterious(0.05) benign(0.255) TCGA-VQ-A925-01 20 19566149 19566149 C T SLC24A3 Silent p.I191I 0.23 TCGA-VQ-A925-01 20 37667279 37667279 C A DHX35 3'UTR 0.30 TCGA-VQ-A925-01 20 44515561 44515561 G A SPATA25 Silent p.F93F 0.38 TCGA-VQ-A925-01 21 17199352 17199352 C T USP25 Missense_Mutation p.S508L 0.21 tolerated(0.28) benign(0.056) TCGA-VQ-A925-01 22 26422429 26422429 G C MYO18B Silent p.G2163G 0.28 TCGA-VQ-A925-01 22 38470973 38470973 A C PICK1 Missense_Mutation p.E361A 0.08 deleterious(0) probably_damaging(0.992) TCGA-VQ-A925-01 2 103378751 103378751 T A TMEM182 Missense_Mutation p.F25L 0.33 deleterious(0.04) possibly_damaging(0.787) TCGA-VQ-A925-01 2 114715028 114715028 C T ACTR3 Missense_Mutation p.S418L 0.17 deleterious_low_confidence(0) benign(0.08) TCGA-VQ-A925-01 2 141245300 141245300 G T LRP1B Missense_Mutation p.N3043K 0.35 benign(0.403) TCGA-VQ-A925-01 2 167129031 167129031 G A SCN9A Nonsense_Mutation p.Q1066* 0.40 TCGA-VQ-A925-01 2 168102278 168102278 A G XIRP2 Missense_Mutation p.H1459R 0.31 benign(0.386) TCGA-VQ-A925-01 2 179441392 179441392 T G TTN Silent p.P23193P 0.28 TCGA-VQ-A925-01 2 198540086 198540086 C T RFTN2 Missense_Mutation p.E33K 0.21 deleterious(0) possibly_damaging(0.69) TCGA-VQ-A925-01 2 201468739 201468739 G A AOX1 Splice_Site p.X197_splice 0.28 TCGA-VQ-A925-01 2 220283127 220283127 C T DES 5'UTR 0.40 TCGA-VQ-A925-01 2 30454536 30454536 C A LBH 5'UTR 0.58 TCGA-VQ-A925-01 2 74491340 74491340 G A SLC4A5 Missense_Mutation p.R217C 0.18 deleterious(0.03) probably_damaging(1) TCGA-VQ-A925-01 2 90192951 90192951 G T IGKV1D-13 Missense_Mutation p.D2Y 0.38 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-VQ-A925-01 3 113082087 113082087 G A WDR52 Missense_Mutation p.R947W 0.52 deleterious(0.01) possibly_damaging(0.663) TCGA-VQ-A925-01 3 130464034 130464034 G A PIK3R4 Missense_Mutation p.P10L 0.49 deleterious(0) probably_damaging(0.979) TCGA-VQ-A925-01 3 149205542 149205542 G T TM4SF4 Missense_Mutation p.G134V 0.05 deleterious(0) probably_damaging(0.993) TCGA-VQ-A925-01 3 151164291 151164291 C T IGSF10 Missense_Mutation p.A1160T 0.50 tolerated(0.71) benign(0.001) TCGA-VQ-A925-01 3 183602551 183602551 C G PARL Missense_Mutation p.E28D 0.45 tolerated_low_confidence(0.45) benign(0.003) TCGA-VQ-A925-01 3 25835845 25835845 G A OXSM Missense_Mutation p.D414N 0.10 tolerated(0.09) benign(0.005) TCGA-VQ-A925-01 3 3085335 3085335 A G CNTN4 Missense_Mutation p.N920D 0.23 deleterious(0.01) benign(0.001) TCGA-VQ-A925-01 3 38645235 38645235 G A SCN5A Missense_Mutation p.R620C 0.13 tolerated(0.07) possibly_damaging(0.495) TCGA-VQ-A925-01 3 46307642 46307642 T A CCR3 Silent p.L352L 0.17 TCGA-VQ-A925-01 3 47456081 47456081 G A SCAP Missense_Mutation p.T1123M 0.32 deleterious(0) probably_damaging(0.995) TCGA-VQ-A925-01 3 52428537 52428537 G A DNAH1 Silent p.P3561P 0.44 TCGA-VQ-A925-01 3 52745778 52745778 G A NEK4 3'UTR 0.07 TCGA-VQ-A925-01 3 77612451 77612451 A G ROBO2 Silent p.P567P 0.07 TCGA-VQ-A925-01 4 155180884 155180884 T G DCHS2 Missense_Mutation p.K1746T 0.15 deleterious(0.04) benign(0.2) TCGA-VQ-A925-01 4 67142586 67142586 A G MIR1269A RNA 0.45 TCGA-VQ-A925-01 4 89052344 89052344 G C ABCG2 Missense_Mutation p.L134V 0.53 tolerated(0.16) probably_damaging(0.913) TCGA-VQ-A925-01 5 140537547 140537547 G A PCDHB17 3'UTR 0.46 TCGA-VQ-A925-01 5 140572970 140572970 T G PCDHB10 Missense_Mutation p.F282C 0.06 deleterious_low_confidence(0) probably_damaging(0.917) TCGA-VQ-A925-01 5 140581484 140581484 C A PCDHB11 Missense_Mutation p.L713M 0.56 deleterious_low_confidence(0.01) possibly_damaging(0.559) TCGA-VQ-A925-01 5 140627450 140627450 G T PCDHB15 Missense_Mutation p.K768N 0.55 tolerated_low_confidence(0.05) benign(0.286) TCGA-VQ-A925-01 5 14690157 14690157 T A FAM105B Missense_Mutation p.L202M 0.22 tolerated(0.17) possibly_damaging(0.495) TCGA-VQ-A925-01 5 23521238 23521238 C A PRDM9 Missense_Mutation p.S153Y 0.39 deleterious_low_confidence(0.04) benign(0.162) TCGA-VQ-A925-01 5 32385696 32385696 C T ZFR Silent p.L853L 0.27 TCGA-VQ-A925-01 5 54401310 54401311 - A GZMA Frame_Shift_Ins p.I29Nfs*6 0.38 TCGA-VQ-A925-01 5 89947493 89947493 T G GPR98 Missense_Mutation p.F1121C 0.63 possibly_damaging(0.869) TCGA-VQ-A925-01 6 110759958 110759958 C A SLC22A16 Missense_Mutation p.A426S 0.48 tolerated(0.39) benign(0.225) TCGA-VQ-A925-01 6 112390695 112390695 A G WISP3 Missense_Mutation p.I331V 0.34 tolerated(0.09) probably_damaging(0.994) TCGA-VQ-A925-01 6 132645211 132645211 C A MOXD1 Missense_Mutation p.R324S 0.19 deleterious(0) possibly_damaging(0.78) TCGA-VQ-A925-01 6 26158710 26158710 G T HIST1H2BD Missense_Mutation p.G105W 0.12 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-VQ-A925-01 6 28121020 28121020 G A ZKSCAN8 Missense_Mutation p.R321Q 0.56 tolerated(0.63) probably_damaging(0.963) TCGA-VQ-A925-01 6 42185600 42185600 G A MRPS10 5'UTR 0.17 TCGA-VQ-A925-01 6 43013823 43013823 C T CUL7 Silent p.L973L 0.12 TCGA-VQ-A925-01 6 47682272 47682272 G T GPR115 Missense_Mutation p.V431F 0.22 deleterious(0) probably_damaging(0.95) TCGA-VQ-A925-01 7 127668622 127668622 A T LRRC4 3'UTR 0.27 TCGA-VQ-A925-01 7 146536856 146536856 G A CNTNAP2 Missense_Mutation p.D88N 0.47 deleterious(0.03) probably_damaging(0.954) TCGA-VQ-A925-01 7 21727066 21727066 C T DNAH11 Nonsense_Mutation p.R1956* 0.27 TCGA-VQ-A925-01 7 4304897 4304897 G A SDK1 Missense_Mutation p.G2175S 0.42 tolerated(0.29) benign(0.018) TCGA-VQ-A925-01 7 6094220 6094220 G T EIF2AK1 Missense_Mutation p.H78Q 0.07 tolerated(0.05) possibly_damaging(0.854) TCGA-VQ-A925-01 7 97823663 97823663 G A LMTK2 Missense_Mutation p.E1296K 0.06 deleterious(0) benign(0.359) TCGA-VQ-A925-01 8 139618655 139618655 A G COL22A1 Missense_Mutation p.L1358P 0.56 unknown(0) TCGA-VQ-A925-01 8 143624792 143624792 A T BAI1 Missense_Mutation p.D1481V 0.71 deleterious(0) probably_damaging(0.998) TCGA-VQ-A925-01 8 17726115 17726115 G T FGL1 Missense_Mutation p.H241N 0.31 tolerated(1) benign(0.001) TCGA-VQ-A925-01 8 2813226 2813226 A C CSMD1 Silent p.T3293T 0.33 TCGA-VQ-A925-01 8 2830735 2830735 G A CSMD1 Missense_Mutation p.R2943C 0.28 probably_damaging(0.996) TCGA-VQ-A925-01 8 36780052 36780052 G A KCNU1 Missense_Mutation p.E881K 0.44 tolerated(0.09) benign(0.037) TCGA-VQ-A925-01 8 77618142 77618142 G A ZFHX4 Missense_Mutation p.G607S 0.44 probably_damaging(0.935) TCGA-VQ-A925-01 9 115805383 115805383 A T ZFP37 Silent p.T505T 0.16 TCGA-VQ-A925-01 9 13222272 13222272 G A MPDZ Missense_Mutation p.S236F 0.13 tolerated(0.08) probably_damaging(0.924) TCGA-VQ-A925-01 9 140414468 140414468 C G PNPLA7 Missense_Mutation p.V329L 0.09 tolerated(0.41) benign(0.015) TCGA-VQ-A925-01 9 19450467 19450467 G - ACER2 Frame_Shift_Del p.A221Lfs*85 0.29 TCGA-VQ-A925-01 9 7011795 7011795 C - KDM4C Frame_Shift_Del p.F628Lfs*14 0.24 TCGA-VQ-A925-01 X 114082691 114082691 C T HTR2C Missense_Mutation p.P159S 0.07 deleterious(0) probably_damaging(0.982) TCGA-VQ-A925-01 X 154774913 154774913 G T TMLHE Missense_Mutation p.L9I 0.85 tolerated_low_confidence(0.07) benign(0.004) TCGA-VQ-A925-01 X 35971836 35971836 A C CXorf22 Missense_Mutation p.S392R 0.60 tolerated(0.13) probably_damaging(0.964) TCGA-VQ-A925-01 Y 4968607 4968607 A G PCDH11Y Silent p.Q996Q 0.45 TCGA-VQ-A927-01 10 127414281 127414281 C G EDRF1 Silent p.V222V 0.06 TCGA-VQ-A927-01 10 67829212 67829212 T G CTNNA3 Missense_Mutation p.E671D 0.15 tolerated(0.54) unknown(0) TCGA-VQ-A927-01 10 83635668 83635668 C T NRG3 Missense_Mutation p.A191V 0.08 tolerated(0.33) benign(0.013) TCGA-VQ-A927-01 11 1017730 1017730 A C MUC6 Missense_Mutation p.S1691A 0.02 unknown(0) TCGA-VQ-A927-01 12 122675998 122675998 T G LRRC43 Missense_Mutation p.L325V 0.06 tolerated(0.1) possibly_damaging(0.827) TCGA-VQ-A927-01 12 132326207 132326207 G A MMP17 Missense_Mutation p.E249K 0.04 deleterious(0.03) probably_damaging(0.982) TCGA-VQ-A927-01 12 20790108 20790108 G T PDE3A Missense_Mutation p.W692C 0.08 deleterious(0) probably_damaging(1) TCGA-VQ-A927-01 12 2602410 2602410 G T CACNA1C Missense_Mutation p.R324L 0.05 deleterious(0.03) possibly_damaging(0.509) TCGA-VQ-A927-01 12 4554486 4554486 C T FGF6 Missense_Mutation p.R84Q 0.09 deleterious(0) possibly_damaging(0.78) TCGA-VQ-A927-01 14 101451130 101451130 G A SNORD114-24 RNA 0.08 TCGA-VQ-A927-01 14 105420231 105420231 C T AHNAK2 Silent p.A519A 0.05 TCGA-VQ-A927-01 14 55900392 55900392 G T TBPL2 Silent p.A248A 0.06 TCGA-VQ-A927-01 15 101588801 101588801 A C LRRK1 Silent p.R1080R 0.05 TCGA-VQ-A927-01 15 25653798 25653798 T A UBE3A 5'Flank 0.12 TCGA-VQ-A927-01 15 33855184 33855184 T G RYR3 Silent p.T373T 0.04 TCGA-VQ-A927-01 16 11852336 11852336 A C ZC3H7A Silent p.A793A 0.10 TCGA-VQ-A927-01 16 26147292 26147292 C A HS3ST4 Missense_Mutation p.A365D 0.09 deleterious(0) probably_damaging(0.986) TCGA-VQ-A927-01 16 57712134 57712134 T G GPR97 Missense_Mutation p.L133R 0.11 deleterious(0) probably_damaging(0.969) TCGA-VQ-A927-01 16 67022699 67022699 C A CES4A Missense_Mutation p.S8R 0.38 tolerated(0.29) benign(0.022) TCGA-VQ-A927-01 17 73872414 73872414 G A TRIM47 Missense_Mutation p.R311C 0.07 deleterious(0.01) probably_damaging(0.998) TCGA-VQ-A927-01 18 196666 196666 A G USP14 Missense_Mutation p.K165E 0.07 tolerated(0.09) benign(0.3) TCGA-VQ-A927-01 18 77287561 77287561 C T NFATC1 Missense_Mutation p.T926M 0.09 tolerated(0.07) benign(0.306) TCGA-VQ-A927-01 19 13993524 13993524 G T C19orf57 3'UTR 0.10 TCGA-VQ-A927-01 19 47884515 47884515 C A DHX34 Missense_Mutation p.L1078I 0.06 tolerated(0.06) benign(0.297) TCGA-VQ-A927-01 19 58490097 58490098 - T ZNF606 Frame_Shift_Ins p.P651Tfs*3 0.15 TCGA-VQ-A927-01 1 111959001 111959001 C T OVGP1 Missense_Mutation p.C367Y 0.14 deleterious(0.03) possibly_damaging(0.863) TCGA-VQ-A927-01 1 1235392 1235392 C T ACAP3 Silent p.L208L 0.08 TCGA-VQ-A927-01 1 152659564 152659564 A G LCE2B Missense_Mutation p.H82R 0.04 tolerated_low_confidence(0.33) unknown(0) TCGA-VQ-A927-01 1 155168204 155168204 T C THBS3 Silent p.S690S 0.06 TCGA-VQ-A927-01 1 17674451 17674451 G A PADI4 Missense_Mutation p.G355S 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A927-01 1 206821993 206821993 G A DYRK3 Missense_Mutation p.G484R 0.04 tolerated(0.24) benign(0.19) TCGA-VQ-A927-01 1 220153561 220153561 A G EPRS Missense_Mutation p.Y1193H 0.05 deleterious(0) probably_damaging(1) TCGA-VQ-A927-01 1 2444427 2444427 G A PANK4 Missense_Mutation p.R543C 0.04 deleterious(0.04) possibly_damaging(0.557) TCGA-VQ-A927-01 20 37005312 37005312 G A LBP 3'UTR 0.05 TCGA-VQ-A927-01 20 55027577 55027577 C T CASS4 Missense_Mutation p.H449Y 0.10 deleterious(0) probably_damaging(0.968) TCGA-VQ-A927-01 21 30408648 30408648 T - USP16 Frame_Shift_Del p.V134Gfs*31 0.09 TCGA-VQ-A927-01 2 141816475 141816475 T A LRP1B Missense_Mutation p.Y462F 0.11 benign(0.153) TCGA-VQ-A927-01 2 179445289 179445289 A C TTN Missense_Mutation p.L22273V 0.09 TCGA-VQ-A927-01 2 20838404 20838404 A T HS1BP3 Missense_Mutation p.S139T 0.10 tolerated(0.17) benign(0.231) TCGA-VQ-A927-01 2 21232777 21232777 A G APOB Silent p.V2321V 0.07 TCGA-VQ-A927-01 2 220499315 220499315 A T SLC4A3 Missense_Mutation p.M606L 0.06 deleterious(0.04) probably_damaging(0.984) TCGA-VQ-A927-01 2 89416928 89416928 C T IGKV1-17 Missense_Mutation p.G86S 0.03 deleterious(0.01) probably_damaging(0.963) TCGA-VQ-A927-01 2 96691691 96691691 C T GPAT2 Missense_Mutation p.V409M 0.09 tolerated(0.08) unknown(0) TCGA-VQ-A927-01 3 151090520 151090520 A G MED12L Missense_Mutation p.Y1242C 0.05 deleterious(0) probably_damaging(0.977) TCGA-VQ-A927-01 3 192980836 192980836 G A HRASLS Missense_Mutation p.D178N 0.07 deleterious(0.01) probably_damaging(0.968) TCGA-VQ-A927-01 4 17625248 17625248 T C MED28 Silent p.L122L 0.13 TCGA-VQ-A927-01 4 189025993 189025993 G C TRIML2 Missense_Mutation p.Q45E 0.05 deleterious(0.05) benign(0.392) TCGA-VQ-A927-01 5 108233440 108233440 A G FER Missense_Mutation p.K376R 0.12 tolerated(0.27) benign(0.009) TCGA-VQ-A927-01 5 140221126 140221126 C A PCDHA8 Missense_Mutation p.L74I 0.04 deleterious_low_confidence(0.01) possibly_damaging(0.498) TCGA-VQ-A927-01 5 140564221 140564221 C T PCDHB16 Missense_Mutation p.S696L 0.04 deleterious_low_confidence(0.01) benign(0.027) TCGA-VQ-A927-01 5 171833356 171833356 T A SH3PXD2B Missense_Mutation p.M53L 0.08 deleterious(0) probably_damaging(0.982) TCGA-VQ-A927-01 6 139170485 139170485 T G ECT2L Missense_Mutation p.L328R 0.08 tolerated(0.25) benign(0.232) TCGA-VQ-A927-01 6 30879663 30879663 T A GTF2H4 Intron 0.10 TCGA-VQ-A927-01 6 35773795 35773795 C A LHFPL5 Missense_Mutation p.S116R 0.04 tolerated(0.37) probably_damaging(0.927) TCGA-VQ-A927-01 6 66115227 66115227 A T EYS Missense_Mutation p.V299D 0.05 tolerated(0.35) benign(0.278) TCGA-VQ-A927-01 6 86333820 86333820 T C SYNCRIP Missense_Mutation p.H226R 0.09 deleterious(0.01) possibly_damaging(0.484) TCGA-VQ-A927-01 7 100085903 100085903 C T NYAP1 Nonsense_Mutation p.R187* 0.10 TCGA-VQ-A927-01 7 1097934 1097934 G A GPR146 Silent p.S261S 0.13 TCGA-VQ-A927-01 7 132192530 132192530 C T PLXNA4 Missense_Mutation p.R308H 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A927-01 7 138819425 138819425 G A TTC26 Missense_Mutation p.V10I 0.10 tolerated(0.26) benign(0.01) TCGA-VQ-A927-01 8 11696138 11696138 T G FDFT1 3'UTR 0.08 TCGA-VQ-A927-01 8 71573974 71573974 T C LACTB2 Missense_Mutation p.N94S 0.04 tolerated(0.76) benign(0.002) TCGA-VQ-A927-01 8 99718851 99718851 T C STK3 Silent p.A204A 0.06 TCGA-VQ-A927-01 9 111644432 111644432 T C IKBKAP Silent p.G1086G 0.08 TCGA-VQ-A927-01 9 123177342 123177342 G A CDK5RAP2 Missense_Mutation p.R1425W 0.04 deleterious(0.01) probably_damaging(0.973) TCGA-VQ-A927-01 9 32450067 32450067 C T ACO1 Silent p.N876N 0.08 TCGA-VQ-A927-01 9 35664066 35664066 G C ARHGEF39 Missense_Mutation p.P138A 0.05 tolerated(0.08) probably_damaging(0.999) TCGA-VQ-A927-01 X 140994586 140994586 A C MAGEC1 Missense_Mutation p.T466P 0.18 tolerated_low_confidence(0.34) possibly_damaging(0.507) TCGA-VQ-A927-01 X 18283748 18283748 T G SCML2 Missense_Mutation p.K302T 0.07 tolerated(0.18) probably_damaging(0.999) TCGA-VQ-A928-01 10 55591144 55591144 A T PCDH15 Nonsense_Mutation p.L1378* 0.22 TCGA-VQ-A928-01 10 71332242 71332242 C T NEUROG3 Silent p.A186A 0.31 TCGA-VQ-A928-01 10 99437775 99437775 C G AVPI1 Missense_Mutation p.E99Q 0.12 deleterious(0.03) benign(0.099) TCGA-VQ-A928-01 11 1016190 1016190 G A MUC6 Missense_Mutation p.A2204V 0.57 benign(0.1) TCGA-VQ-A928-01 11 101829037 101829037 C A KIAA1377 Missense_Mutation p.F215L 0.06 deleterious(0.02) benign(0.176) TCGA-VQ-A928-01 11 124016590 124016590 G T VWA5A Missense_Mutation p.V767F 0.16 tolerated(0.1) benign(0.042) TCGA-VQ-A928-01 11 132081978 132081978 C G NTM Missense_Mutation p.L155V 0.27 deleterious(0) probably_damaging(0.926) TCGA-VQ-A928-01 11 14515948 14515948 C G COPB1 Missense_Mutation p.K43N 0.21 deleterious(0) probably_damaging(0.99) TCGA-VQ-A928-01 11 17332765 17332765 T C NUCB2 Missense_Mutation p.V232A 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A928-01 11 43283829 43283829 T A HNRNPKP3 RNA 0.20 TCGA-VQ-A928-01 11 44077605 44077605 C T ACCSL Silent p.N385N 0.08 TCGA-VQ-A928-01 11 4936809 4936809 G T OR51G2 Missense_Mutation p.H29N 0.39 tolerated(0.08) benign(0.058) TCGA-VQ-A928-01 11 55541554 55541554 T G OR5D13 Missense_Mutation p.I214S 0.22 deleterious(0.02) benign(0.043) TCGA-VQ-A928-01 11 57982925 57982925 G A OR1S1 Missense_Mutation p.A237T 0.24 tolerated(0.4) benign(0.052) TCGA-VQ-A928-01 11 5905611 5905611 C A OR52E4 Missense_Mutation p.S30Y 0.13 deleterious(0) benign(0.206) TCGA-VQ-A928-01 11 64000221 64000221 C T DNAJC4 Silent p.S137S 0.11 TCGA-VQ-A928-01 12 11182993 11182993 C A TAS2R31 3'UTR 0.18 TCGA-VQ-A928-01 12 123789215 123789215 T C SBNO1 Missense_Mutation p.K1228E 0.24 tolerated(0.49) benign(0.003) TCGA-VQ-A928-01 12 14664330 14664330 G A PLBD1 Silent p.T350T 0.37 TCGA-VQ-A928-01 13 108922352 108922352 C T TNFSF13B Missense_Mutation p.P37S 0.27 tolerated(0.11) benign(0.122) TCGA-VQ-A928-01 13 113729349 113729349 G A MCF2L Missense_Mutation p.G385D 0.31 deleterious(0) probably_damaging(0.988) TCGA-VQ-A928-01 14 39716157 39716157 G A MIA2 Missense_Mutation p.D127N 0.16 deleterious(0.01) benign(0.364) TCGA-VQ-A928-01 15 25958837 25958837 C A ATP10A Silent p.L776L 0.19 TCGA-VQ-A928-01 16 2257253 2257253 C A MLST8 Missense_Mutation p.D160E 0.10 tolerated(0.14) benign(0.408) TCGA-VQ-A928-01 17 36478041 36478041 G C MRPL45 Missense_Mutation p.L231F 0.12 deleterious(0) probably_damaging(0.998) TCGA-VQ-A928-01 17 40843466 40843466 G A CNTNAP1 Missense_Mutation p.D761N 0.19 deleterious(0.02) probably_damaging(0.973) TCGA-VQ-A928-01 17 48693726 48693726 C T CACNA1G Missense_Mutation p.R1668C 0.15 deleterious(0) probably_damaging(0.982) TCGA-VQ-A928-01 19 34900348 34900348 G A PDCD2L Missense_Mutation p.A207T 0.08 deleterious(0) probably_damaging(0.998) TCGA-VQ-A928-01 19 41381540 41381540 C T CYP2A7 3'UTR 0.43 TCGA-VQ-A928-01 19 50304802 50304802 G A AP2A1 Missense_Mutation p.R570H 0.18 deleterious(0.02) benign(0.063) TCGA-VQ-A928-01 19 58421402 58421402 G A ZNF417 Missense_Mutation p.P82S 0.16 tolerated(0.34) benign(0.4) TCGA-VQ-A928-01 1 157804296 157804296 A T CD5L Missense_Mutation p.S207T 0.34 tolerated(0.08) benign(0.212) TCGA-VQ-A928-01 1 16475471 16475471 G A EPHA2 Silent p.G75G 0.17 TCGA-VQ-A928-01 1 177001907 177001907 G A ASTN1 Missense_Mutation p.R184C 0.26 deleterious_low_confidence(0) probably_damaging(0.923) TCGA-VQ-A928-01 1 200826995 200826995 T C CAMSAP2 Silent p.T1415T 0.21 TCGA-VQ-A928-01 1 236205576 236205576 G T NID1 Missense_Mutation p.Q257K 0.06 tolerated(0.99) benign(0.008) TCGA-VQ-A928-01 1 236914934 236914934 C A ACTN2 Silent p.L607L 0.30 TCGA-VQ-A928-01 1 39311726 39311726 G A RRAGC Silent p.D311D 0.06 TCGA-VQ-A928-01 1 50659494 50659494 G T ELAVL4 Missense_Mutation p.G155C 0.13 deleterious(0) probably_damaging(0.999) TCGA-VQ-A928-01 1 67519607 67519607 C T SLC35D1 Silent p.G30G 0.30 TCGA-VQ-A928-01 1 70687409 70687409 C T SRSF11 Silent p.G30G 0.09 TCGA-VQ-A928-01 21 37833319 37833319 C A CLDN14 Silent p.V225V 0.23 TCGA-VQ-A928-01 21 41142883 41142883 C T IGSF5 Silent p.V153V 0.31 TCGA-VQ-A928-01 22 19467705 19467705 G T CDC45 Missense_Mutation p.D26Y 0.28 deleterious(0) probably_damaging(1) TCGA-VQ-A928-01 22 35816004 35816004 C T MCM5 Missense_Mutation p.R611W 0.31 deleterious(0.01) benign(0.145) TCGA-VQ-A928-01 2 197672200 197672200 C T C2orf66 Silent p.Q107Q 0.06 TCGA-VQ-A928-01 2 224462640 224462640 G T SCG2 Missense_Mutation p.P454H 0.23 tolerated(0.14) possibly_damaging(0.8) TCGA-VQ-A928-01 2 234775291 234775291 C A MSL3P1 RNA 0.16 TCGA-VQ-A928-01 2 27499674 27499674 G T DNAJC5G Missense_Mutation p.K26N 0.08 deleterious(0) probably_damaging(0.956) TCGA-VQ-A928-01 2 55573453 55573453 G A CCDC88A Missense_Mutation p.S300L 0.26 deleterious(0) benign(0.027) TCGA-VQ-A928-01 2 9517044 9517044 A G ASAP2 Missense_Mutation p.D585G 0.12 tolerated(1) benign(0.001) TCGA-VQ-A928-01 3 184008996 184008996 G T ECE2 Missense_Mutation p.G786V 0.26 deleterious(0) probably_damaging(1) TCGA-VQ-A928-01 3 188590482 188590482 G A LPP Silent p.P547P 0.34 TCGA-VQ-A928-01 3 47868907 47868907 C T DHX30 Silent p.L65L 0.08 TCGA-VQ-A928-01 4 177649080 177649080 T C VEGFC Missense_Mutation p.E135G 0.15 deleterious(0) probably_damaging(0.999) TCGA-VQ-A928-01 4 367383 367383 A C ZNF141 Missense_Mutation p.K386T 0.16 deleterious(0.01) benign(0.255) TCGA-VQ-A928-01 5 126769103 126769103 G T MEGF10 Missense_Mutation p.C581F 0.13 deleterious(0) probably_damaging(0.998) TCGA-VQ-A928-01 5 139918537 139918538 - TAT ANKHD1 In_Frame_Ins p.I2480_P2481insL 0.29 TCGA-VQ-A928-01 5 140257092 140257092 T A PCDHA12 Missense_Mutation p.S679T 0.30 tolerated_low_confidence(0.05) benign(0.135) TCGA-VQ-A928-01 5 140347105 140347105 G A PCDHAC2 Missense_Mutation p.D252N 0.26 deleterious(0) probably_damaging(1) TCGA-VQ-A928-01 5 140482195 140482195 C T PCDHB3 Silent p.A654A 0.11 TCGA-VQ-A928-01 5 140595591 140595591 G A PCDHB13 Silent p.E632E 0.09 TCGA-VQ-A928-01 5 24535262 24535262 G C CDH10 Missense_Mutation p.T258R 0.14 deleterious(0) probably_damaging(0.999) TCGA-VQ-A928-01 5 38506152 38506152 A T LIFR Silent p.L382L 0.17 TCGA-VQ-A928-01 6 33371556 33371556 G T KIFC1 Missense_Mutation p.A136S 0.14 tolerated(0.09) benign(0.046) TCGA-VQ-A928-01 6 34003831 34003831 G T GRM4 Missense_Mutation p.R686S 0.30 deleterious(0.02) benign(0.281) TCGA-VQ-A928-01 6 42153415 42153415 T A GUCA1B Intron 0.16 TCGA-VQ-A928-01 7 140273635 140273635 G C DENND2A Missense_Mutation p.N473K 0.10 deleterious(0.01) probably_damaging(0.978) TCGA-VQ-A928-01 7 82784266 82784266 C G PCLO Missense_Mutation p.G564A 0.08 unknown(0) TCGA-VQ-A928-01 8 107773719 107773719 A T ABRA Missense_Mutation p.L231H 0.49 tolerated(0.1) probably_damaging(0.974) TCGA-VQ-A928-01 8 11996183 11996183 A T USP17L2 Missense_Mutation p.F29L 0.22 tolerated(0.24) benign(0.007) TCGA-VQ-A928-01 8 14412298 14412298 G A SGCZ Silent p.T59T 0.24 TCGA-VQ-A928-01 8 25708176 25708176 G T EBF2 Missense_Mutation p.P544T 0.12 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-VQ-A928-01 8 38008462 38008462 C T STAR 5'UTR 0.21 TCGA-VQ-A928-01 9 21077827 21077827 G A IFNB1 Silent p.C14C 0.23 TCGA-VQ-A928-01 X 114953578 114953578 G A RP1-241P17.4 5'UTR 0.73 TCGA-VQ-A928-01 X 18822065 18822065 C T PPEF1 Missense_Mutation p.T374M 0.25 deleterious(0.01) probably_damaging(0.938) TCGA-VQ-A92D-01 10 119303055 119303055 G A EMX2 Missense_Mutation p.A93T 0.24 tolerated(0.63) benign(0.07) TCGA-VQ-A92D-01 10 124183744 124183744 T A PLEKHA1 Silent p.L237L 0.20 TCGA-VQ-A92D-01 10 23248465 23248467 AAG - ARMC3 In_Frame_Del p.K168del 0.26 TCGA-VQ-A92D-01 10 63441053 63441053 C G C10orf107 Nonsense_Mutation p.S18* 0.17 TCGA-VQ-A92D-01 10 63850780 63850780 A G ARID5B Missense_Mutation p.T520A 0.61 tolerated(0.53) benign(0) TCGA-VQ-A92D-01 10 63852064 63852064 C G ARID5B Missense_Mutation p.R948G 0.22 tolerated(0.39) possibly_damaging(0.81) TCGA-VQ-A92D-01 10 64136599 64136599 G T ZNF365 Missense_Mutation p.R216L 0.23 tolerated(0.11) possibly_damaging(0.791) TCGA-VQ-A92D-01 10 84498333 84498333 G T NRG3 Silent p.R318R 0.18 TCGA-VQ-A92D-01 10 96022448 96022448 G A PLCE1 Missense_Mutation p.G1338R 0.38 tolerated(0.88) possibly_damaging(0.734) TCGA-VQ-A92D-01 11 284631 284631 G A NLRP6 Silent p.L843L 0.35 TCGA-VQ-A92D-01 11 3714565 3714565 G A NUP98 Missense_Mutation p.S1403F 0.40 deleterious(0.01) possibly_damaging(0.784) TCGA-VQ-A92D-01 11 46686425 46686425 G A ATG13 Silent p.Q305Q 0.09 TCGA-VQ-A92D-01 11 46784245 46784245 T C CKAP5 Missense_Mutation p.Y1320C 0.13 deleterious(0) probably_damaging(0.999) TCGA-VQ-A92D-01 11 46910982 46910982 C A LRP4 Missense_Mutation p.S732I 0.25 deleterious(0.02) benign(0.139) TCGA-VQ-A92D-01 11 47594803 47594804 CA - KBTBD4 Frame_Shift_Del p.V428Efs*17 0.18 TCGA-VQ-A92D-01 11 55322124 55322124 C A OR4C15 Missense_Mutation p.F114L 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.57) TCGA-VQ-A92D-01 11 60703505 60703505 C T TMEM132A Missense_Mutation p.A734V 0.56 deleterious(0.01) benign(0.009) TCGA-VQ-A92D-01 11 66189643 66189643 C A NPAS4 Missense_Mutation p.D76E 0.38 tolerated(0.78) benign(0.113) TCGA-VQ-A92D-01 11 73825523 73825523 C T C2CD3 Missense_Mutation p.E546K 0.37 deleterious(0.03) probably_damaging(0.924) TCGA-VQ-A92D-01 11 82880628 82880628 A T PCF11 Missense_Mutation p.Q1084L 0.30 tolerated(0.3) probably_damaging(0.989) TCGA-VQ-A92D-01 12 109719351 109719351 G A FOXN4 Silent p.H385H 0.33 TCGA-VQ-A92D-01 12 121681821 121681821 G C CAMKK2 Intron 0.36 TCGA-VQ-A92D-01 12 122359386 122359386 G A WDR66 Missense_Mutation p.E59K 0.30 tolerated_low_confidence(0.11) benign(0.019) TCGA-VQ-A92D-01 12 123880936 123880936 A C SETD8 Missense_Mutation p.Y185S 0.31 deleterious(0.03) benign(0.328) TCGA-VQ-A92D-01 12 53594230 53594230 C T ITGB7 Intron 0.48 TCGA-VQ-A92D-01 12 56493704 56493705 - AGAACT ERBB3 In_Frame_Ins p.E1008_L1009dup 0.28 TCGA-VQ-A92D-01 12 56493724 56493724 G T ERBB3 Missense_Mutation p.D1014Y 0.27 tolerated(1) benign(0.398) TCGA-VQ-A92D-01 12 72070862 72070862 A T THAP2 Nonsense_Mutation p.K221* 0.30 TCGA-VQ-A92D-01 13 22275367 22275367 C A FGF9 Missense_Mutation p.F140L 0.25 tolerated(0.12) benign(0.042) TCGA-VQ-A92D-01 13 40293942 40293942 G A COG6 Missense_Mutation p.R521H 0.28 deleterious(0.03) benign(0.363) TCGA-VQ-A92D-01 13 46730691 46730691 C T LCP1 Missense_Mutation p.A125T 0.19 deleterious(0) probably_damaging(0.988) TCGA-VQ-A92D-01 13 52544779 52544779 C A ATP7B Silent p.G464G 0.14 TCGA-VQ-A92D-01 13 74420436 74420436 C T KLF12 Silent p.P66P 0.34 TCGA-VQ-A92D-01 13 84455412 84455412 C A SLITRK1 Missense_Mutation p.E77D 0.34 tolerated(0.37) benign(0.042) TCGA-VQ-A92D-01 14 101438503 101438503 T G SNORD114-14 RNA 0.42 TCGA-VQ-A92D-01 14 106236318 106236318 C A IGHG3 Nonsense_Mutation p.E163* 0.62 TCGA-VQ-A92D-01 14 21796656 21796656 G A RPGRIP1 Missense_Mutation p.G990E 0.40 tolerated(0.05) benign(0.209) TCGA-VQ-A92D-01 14 51713849 51713849 G A TMX1 Silent p.R118R 0.12 TCGA-VQ-A92D-01 14 73491099 73491099 G A ZFYVE1 Silent p.L40L 0.26 TCGA-VQ-A92D-01 15 91769893 91769893 C T SV2B Missense_Mutation p.P134S 0.42 tolerated(0.08) probably_damaging(1) TCGA-VQ-A92D-01 16 22162152 22162152 T C VWA3A Missense_Mutation p.L1089S 0.35 deleterious(0) benign(0.393) TCGA-VQ-A92D-01 16 25232780 25232780 G C AQP8 Missense_Mutation p.G88A 0.31 deleterious(0) probably_damaging(0.997) TCGA-VQ-A92D-01 16 27751481 27751481 G C KIAA0556 Missense_Mutation p.Q621H 0.31 deleterious(0) possibly_damaging(0.504) TCGA-VQ-A92D-01 16 2817083 2817084 TG - SRRM2 Frame_Shift_Del p.L2185Hfs*73 0.28 TCGA-VQ-A92D-01 16 50788310 50788310 A G CYLD Silent p.L296L 0.21 TCGA-VQ-A92D-01 16 66969567 66969567 T C CES2 Missense_Mutation p.L74P 0.07 deleterious(0.01) probably_damaging(0.997) TCGA-VQ-A92D-01 16 70398975 70398975 A G DDX19A Missense_Mutation p.E182G 0.03 deleterious(0.02) probably_damaging(0.986) TCGA-VQ-A92D-01 17 10323527 10323527 G A MYH8 Silent p.D6D 0.34 TCGA-VQ-A92D-01 17 11845742 11845742 G C DNAH9 Silent p.R4261R 0.17 TCGA-VQ-A92D-01 17 1383904 1383904 C G MYO1C Missense_Mutation p.V275L 0.42 tolerated(0.11) benign(0.032) TCGA-VQ-A92D-01 17 16253331 16253331 G A CENPV Silent p.G141G 0.38 TCGA-VQ-A92D-01 17 21319561 21319561 G T KCNJ12 Missense_Mutation p.V303L 0.17 deleterious(0) possibly_damaging(0.883) TCGA-VQ-A92D-01 17 34856764 34856764 C T MYO19 Silent p.L761L 0.27 TCGA-VQ-A92D-01 17 36876054 36876054 C T MLLT6 Silent p.P687P 0.50 TCGA-VQ-A92D-01 17 38320029 38320029 G T CASC3 Missense_Mutation p.D361Y 0.05 deleterious_low_confidence(0) possibly_damaging(0.701) TCGA-VQ-A92D-01 17 41166235 41166235 C T IFI35 Silent p.R262R 0.30 TCGA-VQ-A92D-01 17 43012631 43012631 T C KIF18B Missense_Mutation p.Q156R 0.55 deleterious(0.02) possibly_damaging(0.799) TCGA-VQ-A92D-01 17 56082801 56082802 - A SRSF1 Frame_Shift_Ins p.S238Ffs*5 0.29 TCGA-VQ-A92D-01 17 60464717 60464717 G T EFCAB3 Nonsense_Mutation p.G83* 0.12 TCGA-VQ-A92D-01 17 72916042 72916044 CCT - USH1G In_Frame_Del p.E296del 0.28 TCGA-VQ-A92D-01 19 12541424 12541424 C G ZNF443 Missense_Mutation p.R521P 0.07 tolerated(0.29) possibly_damaging(0.503) TCGA-VQ-A92D-01 19 12978709 12978709 C - MAST1 Frame_Shift_Del p.A830Rfs*69 0.20 TCGA-VQ-A92D-01 19 32930797 32930797 A G DPY19L3 Missense_Mutation p.D279G 0.05 tolerated(0.18) benign(0.02) TCGA-VQ-A92D-01 19 36398349 36398349 C T TYROBP Silent p.E76E 0.22 TCGA-VQ-A92D-01 19 40902918 40902918 A T PRX Silent p.A447A 0.28 TCGA-VQ-A92D-01 19 45397092 45397092 T C TOMM40 Missense_Mutation p.V164A 0.15 tolerated(0.06) benign(0.088) TCGA-VQ-A92D-01 19 49259704 49259704 G T FGF21 Missense_Mutation p.G71C 0.15 tolerated(0.27) probably_damaging(1) TCGA-VQ-A92D-01 19 49684719 49684719 G A TRPM4 Splice_Site p.X421_splice 0.26 TCGA-VQ-A92D-01 19 50099393 50099393 G A PRR12 Missense_Mutation p.A601T 0.05 possibly_damaging(0.682) TCGA-VQ-A92D-01 19 51535214 51535214 T C KLK12 Silent p.Q125Q 0.23 TCGA-VQ-A92D-01 19 57065060 57065060 A T ZFP28 Silent p.R302R 0.21 TCGA-VQ-A92D-01 19 58846271 58846271 G A ZSCAN22 Missense_Mutation p.G35R 0.51 tolerated(0.23) benign(0) TCGA-VQ-A92D-01 19 691994 691994 C T PRSS57 Missense_Mutation p.R82H 0.23 tolerated(0.13) benign(0.01) TCGA-VQ-A92D-01 19 9071643 9071643 G A MUC16 Missense_Mutation p.T5268M 0.38 unknown(0) TCGA-VQ-A92D-01 1 1019689 1019689 C T C1orf159 Intron 0.25 TCGA-VQ-A92D-01 1 110255325 110255325 C A GSTM5 Intron 0.39 TCGA-VQ-A92D-01 1 115418718 115418718 G A SYCP1 Missense_Mutation p.R229H 0.37 deleterious(0.03) probably_damaging(1) TCGA-VQ-A92D-01 1 118565996 118565996 C A SPAG17 Missense_Mutation p.D1334Y 0.27 deleterious(0) benign(0.234) TCGA-VQ-A92D-01 1 150933457 150933457 C T SETDB1 Silent p.S973S 0.73 TCGA-VQ-A92D-01 1 152080181 152080181 G A TCHH Missense_Mutation p.R1838W 0.11 possibly_damaging(0.689) TCGA-VQ-A92D-01 1 152191362 152191362 G A HRNR Missense_Mutation p.R915W 0.32 unknown(0) TCGA-VQ-A92D-01 1 155108341 155108357 CGCAGGCTCGCGGCGGG - SLC50A1 5'UTR 0.18 TCGA-VQ-A92D-01 1 156264607 156264607 G A C1orf85 Silent p.G107G 0.19 TCGA-VQ-A92D-01 1 165533104 165533104 G T LRRC52 3'UTR 0.38 TCGA-VQ-A92D-01 1 175332856 175332856 G A TNR Nonsense_Mutation p.R899* 0.33 TCGA-VQ-A92D-01 1 181754871 181754871 G A CACNA1E Missense_Mutation p.R1901H 0.18 deleterious(0.02) possibly_damaging(0.522) TCGA-VQ-A92D-01 1 183201898 183201898 G T LAMC2 Missense_Mutation p.G709V 0.23 deleterious(0) possibly_damaging(0.846) TCGA-VQ-A92D-01 1 190067613 190067613 T G BRINP3 Missense_Mutation p.L612F 0.49 deleterious(0) probably_damaging(0.997) TCGA-VQ-A92D-01 1 205628640 205628640 C T SLC45A3 Missense_Mutation p.G462R 0.47 tolerated(0.38) benign(0.316) TCGA-VQ-A92D-01 1 207647223 207647223 C G CR2 Missense_Mutation p.Q745E 0.39 tolerated(0.2) benign(0.356) TCGA-VQ-A92D-01 1 209880331 209880331 T G HSD11B1 Silent p.S125S 0.23 TCGA-VQ-A92D-01 1 23189649 23189649 A G EPHB2 Missense_Mutation p.R311G 0.32 deleterious(0) benign(0.315) TCGA-VQ-A92D-01 1 57169943 57169943 T C PRKAA2 Missense_Mutation p.L363P 0.29 tolerated(0.24) benign(0.188) TCGA-VQ-A92D-01 1 67155939 67155939 G A SGIP1 Missense_Mutation p.E504K 0.33 deleterious(0.01) possibly_damaging(0.899) TCGA-VQ-A92D-01 1 67358959 67358959 G A WDR78 Silent p.S161S 0.24 TCGA-VQ-A92D-01 1 92470751 92470751 A G BRDT Silent p.K890K 0.27 TCGA-VQ-A92D-01 20 44313416 44313416 C A WFDC10B 3'UTR 0.10 TCGA-VQ-A92D-01 20 44530924 44530924 G A PLTP Missense_Mutation p.T386M 0.34 tolerated(0.07) possibly_damaging(0.667) TCGA-VQ-A92D-01 20 60887316 60887316 G A LAMA5 Silent p.N3139N 0.42 TCGA-VQ-A92D-01 22 17072814 17072814 G A CCT8L2 Silent p.P209P 0.36 TCGA-VQ-A92D-01 22 31495748 31495748 C A SMTN Missense_Mutation p.N823K 0.25 deleterious(0) probably_damaging(1) TCGA-VQ-A92D-01 22 32756332 32756332 G A RFPL3 Missense_Mutation p.R156Q 0.32 tolerated(0.17) benign(0.03) TCGA-VQ-A92D-01 2 163057099 163057099 G A FAP Silent p.Y418Y 0.31 TCGA-VQ-A92D-01 2 169939855 169939855 C T DHRS9 Silent p.I110I 0.13 TCGA-VQ-A92D-01 2 175618145 175618145 T G CHRNA1 Intron 0.08 TCGA-VQ-A92D-01 2 216259306 216259306 A C FN1 Silent p.V1247V 0.26 TCGA-VQ-A92D-01 2 228881314 228881314 C T SPHKAP Missense_Mutation p.R1419Q 0.09 tolerated(0.72) benign(0.004) TCGA-VQ-A92D-01 2 238977996 238977996 A C SCLY Missense_Mutation p.K129T 0.23 tolerated(0.29) benign(0.009) TCGA-VQ-A92D-01 2 25170426 25170426 C A DNAJC27 3'UTR 0.29 TCGA-VQ-A92D-01 2 56420473 56420473 G T CCDC85A Nonsense_Mutation p.G380* 0.31 TCGA-VQ-A92D-01 2 85051326 85051326 C T TRABD2A Missense_Mutation p.G313E 0.60 tolerated(1) benign(0.001) TCGA-VQ-A92D-01 3 118865086 118865086 G T C3orf30 Missense_Mutation p.S17I 0.36 tolerated(0.07) benign(0.004) TCGA-VQ-A92D-01 3 138376591 138376591 G C PIK3CB Silent p.T961T 0.49 TCGA-VQ-A92D-01 3 142681550 142681550 C G PAQR9 Missense_Mutation p.R210P 0.53 tolerated(0.28) possibly_damaging(0.53) TCGA-VQ-A92D-01 3 151129235 151129235 C T MED12L Missense_Mutation p.P1992L 0.25 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-VQ-A92D-01 3 154861335 154861335 C T MME Missense_Mutation p.A431V 0.36 deleterious(0.01) possibly_damaging(0.905) TCGA-VQ-A92D-01 3 186303239 186303239 C T DNAJB11 3'UTR 0.40 TCGA-VQ-A92D-01 3 27760140 27760140 C T EOMES Splice_Site p.X440_splice 0.27 TCGA-VQ-A92D-01 3 33216546 33216546 G A SUSD5 Missense_Mutation p.P144S 0.19 deleterious(0) probably_damaging(0.999) TCGA-VQ-A92D-01 4 139964296 139964296 G C CCRN4L Missense_Mutation p.A87P 0.09 tolerated_low_confidence(0.29) benign(0.002) TCGA-VQ-A92D-01 4 143067014 143067014 C A INPP4B Missense_Mutation p.A567S 0.33 tolerated(0.83) benign(0.001) TCGA-VQ-A92D-01 4 21950327 21950327 C T KCNIP4 5'UTR 0.45 TCGA-VQ-A92D-01 4 2696852 2696852 G A FAM193A Missense_Mutation p.G800D 0.29 deleterious(0) probably_damaging(0.998) TCGA-VQ-A92D-01 4 37636637 37636637 G A RELL1 Silent p.G184G 0.29 TCGA-VQ-A92D-01 4 40113764 40113764 C T N4BP2 Missense_Mutation p.A520V 0.33 deleterious(0) probably_damaging(1) TCGA-VQ-A92D-01 4 47578876 47578876 C T ATP10D Silent p.F1151F 0.33 TCGA-VQ-A92D-01 4 99355195 99355195 A G RAP1GDS1 Missense_Mutation p.I518V 0.40 tolerated(0.26) possibly_damaging(0.839) TCGA-VQ-A92D-01 5 10261761 10261761 G A CCT5 Silent p.E361E 0.07 TCGA-VQ-A92D-01 5 126887391 126887391 T A PRRC1 Intron 0.20 TCGA-VQ-A92D-01 5 140222188 140222188 C T PCDHA8 Missense_Mutation p.R428W 0.35 deleterious_low_confidence(0.04) benign(0.06) TCGA-VQ-A92D-01 5 14462966 14462966 G A TRIO Missense_Mutation p.V1867M 0.38 benign(0.044) TCGA-VQ-A92D-01 5 169018219 169018219 A - SPDL1 Frame_Shift_Del p.T111Lfs*3 0.28 TCGA-VQ-A92D-01 5 170395282 170395282 G C RANBP17 Missense_Mutation p.L537F 0.16 deleterious(0.01) possibly_damaging(0.642) TCGA-VQ-A92D-01 5 180582044 180582044 G A OR2V2 Silent p.A34A 0.33 TCGA-VQ-A92D-01 5 19473790 19473790 T C CDH18 Missense_Mutation p.K640E 0.37 deleterious(0.01) probably_damaging(0.995) TCGA-VQ-A92D-01 5 22143059 22143059 G A CDH12 Intron 0.22 TCGA-VQ-A92D-01 5 32088080 32088080 C A PDZD2 Missense_Mutation p.P1509H 0.21 deleterious(0) probably_damaging(1) TCGA-VQ-A92D-01 5 33891848 33891848 C T ADAMTS12 Silent p.P38P 0.33 TCGA-VQ-A92D-01 5 5461657 5461657 C T KIAA0947 Missense_Mutation p.S737L 0.43 deleterious(0.04) benign(0.066) TCGA-VQ-A92D-01 5 57752351 57752351 T G PLK2 Missense_Mutation p.T408P 0.16 tolerated(0.18) benign(0.073) TCGA-VQ-A92D-01 5 92929595 92929595 A T NR2F1 3'UTR 0.42 TCGA-VQ-A92D-01 6 109763764 109763764 C T SMPD2 Nonsense_Mutation p.R143* 0.04 TCGA-VQ-A92D-01 6 135521253 135521253 C T MYB Silent p.I580I 0.18 TCGA-VQ-A92D-01 6 25770487 25770487 G C SLC17A4 Missense_Mutation p.A164P 0.34 tolerated(0.13) possibly_damaging(0.85) TCGA-VQ-A92D-01 6 26199142 26199142 G A HIST1H2AD Silent p.P110P 0.31 TCGA-VQ-A92D-01 6 26200213 26200213 C G HIST1H2BF 3'UTR 0.20 TCGA-VQ-A92D-01 6 27792241 27792241 C A HIST1H4J 3'UTR 0.25 TCGA-VQ-A92D-01 6 27840015 27840015 G A HIST1H3I Missense_Mutation p.R27C 0.31 tolerated_low_confidence(0.06) benign(0.04) TCGA-VQ-A92D-01 6 33374041 33374041 A T KIFC1 Silent p.S535S 0.33 TCGA-VQ-A92D-01 6 56394377 56394377 T A DST Missense_Mutation p.N3199Y 0.49 probably_damaging(1) TCGA-VQ-A92D-01 7 100243916 100243916 G A ACTL6B Missense_Mutation p.R386C 0.11 deleterious(0.01) possibly_damaging(0.874) TCGA-VQ-A92D-01 7 150217650 150217650 C T GIMAP7 Silent p.N196N 0.47 TCGA-VQ-A92D-01 7 21723500 21723500 C A DNAH11 Missense_Mutation p.F1860L 0.32 benign(0.137) TCGA-VQ-A92D-01 7 2259063 2259063 G C MAD1L1 Missense_Mutation p.S167W 0.30 deleterious(0) probably_damaging(0.998) TCGA-VQ-A92D-01 7 3991478 3991478 C T SDK1 Missense_Mutation p.P359L 0.32 tolerated(0.6) benign(0) TCGA-VQ-A92D-01 7 5780662 5780662 C T RNF216 Nonsense_Mutation p.W329* 0.05 TCGA-VQ-A92D-01 7 94047816 94047816 A G COL1A2 Silent p.E659E 0.35 TCGA-VQ-A92D-01 8 104922393 104922393 G A RIMS2 Silent p.T552T 0.28 TCGA-VQ-A92D-01 8 124453657 124453657 C G WDYHV1 3'UTR 0.62 TCGA-VQ-A92D-01 8 140630758 140630758 C T KCNK9 Missense_Mutation p.V290I 0.62 tolerated(0.17) benign(0) TCGA-VQ-A92D-01 8 143747316 143747316 G A JRK RNA 0.16 TCGA-VQ-A92D-01 8 623923 623923 T G ERICH1 Missense_Mutation p.L143F 0.27 deleterious(0.01) probably_damaging(0.992) TCGA-VQ-A92D-01 8 9413730 9413730 G A TNKS Missense_Mutation p.S94N 0.06 deleterious_low_confidence(0.01) unknown(0) TCGA-VQ-A92D-01 9 102730957 102730973 AACCAAATTTCAGTATT - STX17 3'UTR 0.37 TCGA-VQ-A92D-01 9 104086316 104086316 G A LPPR1 Missense_Mutation p.A319T 0.35 tolerated(0.52) benign(0.034) TCGA-VQ-A92D-01 9 135458626 135458626 G T BARHL1 Missense_Mutation p.A148S 0.29 tolerated(1) benign(0.002) TCGA-VQ-A92D-01 9 139878086 139878086 C T LCNL1 Silent p.D16D 0.34 TCGA-VQ-A92D-01 9 74860096 74860096 G A GDA Missense_Mutation p.E390K 0.17 tolerated(0.2) benign(0.026) TCGA-VQ-A92D-01 9 79325181 79325181 G A PRUNE2 Missense_Mutation p.A670V 0.31 deleterious(0.01) possibly_damaging(0.536) TCGA-VQ-A92D-01 X 102979872 102979872 C T GLRA4 Missense_Mutation p.M52I 0.42 tolerated(0.1) possibly_damaging(0.853) TCGA-VQ-A92D-01 X 114524297 114524297 G A LUZP4 5'Flank 0.85 TCGA-VQ-A92D-01 X 152914821 152914821 G A DUSP9 Missense_Mutation p.D170N 0.87 deleterious(0.03) possibly_damaging(0.597) TCGA-VQ-A92D-01 Y 3447604 3447604 C T TGIF2LY Missense_Mutation p.R107C 0.70 tolerated(0.08) probably_damaging(0.998) TCGA-VQ-A94O-01 10 13699033 13699033 G A FRMD4A Silent p.S852S 0.33 TCGA-VQ-A94O-01 10 23481519 23481519 C G PTF1A Nonsense_Mutation p.Y20* 0.10 TCGA-VQ-A94O-01 10 28971044 28971044 T C BAMBI Missense_Mutation p.V166A 0.07 deleterious(0.04) benign(0.11) TCGA-VQ-A94O-01 10 45938513 45938513 G A ALOX5 Missense_Mutation p.V434M 0.24 deleterious(0.01) probably_damaging(0.928) TCGA-VQ-A94O-01 10 73558924 73558924 A G CDH23 Missense_Mutation p.T131A 0.22 deleterious(0.01) possibly_damaging(0.573) TCGA-VQ-A94O-01 11 123886722 123886722 T A OR10G4 Silent p.T147T 0.49 TCGA-VQ-A94O-01 11 123900656 123900656 C T OR10G8 Silent p.T109T 0.79 TCGA-VQ-A94O-01 12 50586257 50586257 C T LIMA1 Missense_Mutation p.S374N 0.44 tolerated(0.25) benign(0.005) TCGA-VQ-A94O-01 12 52844303 52844303 G A KRT6B Silent p.F214F 0.46 TCGA-VQ-A94O-01 12 93147948 93147948 C T PLEKHG7 Missense_Mutation p.P133L 0.29 deleterious(0) probably_damaging(0.992) TCGA-VQ-A94O-01 13 20600875 20600876 CA - ZMYM2 Frame_Shift_Del p.H570Qfs*18 0.26 TCGA-VQ-A94O-01 14 21561013 21561013 G A ZNF219 Missense_Mutation p.A148V 0.17 tolerated(0.28) benign(0.021) TCGA-VQ-A94O-01 14 29237308 29237308 C T FOXG1 Missense_Mutation p.R275C 0.12 deleterious(0.01) probably_damaging(1) TCGA-VQ-A94O-01 15 24922388 24922388 C T NPAP1 Silent p.I458I 0.21 TCGA-VQ-A94O-01 15 25227158 25227158 G A SNRPN 3'Flank 0.13 TCGA-VQ-A94O-01 15 75714897 75714897 T C SIN3A Intron 0.12 TCGA-VQ-A94O-01 16 31092963 31092963 G T ZNF646 Missense_Mutation p.R1773L 0.42 tolerated(0.11) benign(0.106) TCGA-VQ-A94O-01 16 46836852 46836852 T A C16orf87 3'UTR 0.30 TCGA-VQ-A94O-01 16 53301338 53301338 G A CHD9 Missense_Mutation p.D1485N 0.41 possibly_damaging(0.55) TCGA-VQ-A94O-01 17 35921686 35921686 G T SYNRG Missense_Mutation p.P496H 0.44 deleterious(0) possibly_damaging(0.626) TCGA-VQ-A94O-01 17 4045899 4045899 C A ZZEF1 Silent p.L97L 0.14 TCGA-VQ-A94O-01 17 729273 729273 T G NXN Missense_Mutation p.I136L 0.18 deleterious(0.01) benign(0.235) TCGA-VQ-A94O-01 17 7577118 7577118 C A TP53 Missense_Mutation p.V274F 0.75 deleterious(0.03) benign(0.275) TCGA-VQ-A94O-01 18 34310719 34310719 C T FHOD3 Silent p.I1001I 0.59 TCGA-VQ-A94O-01 18 49867229 49867229 C T DCC Silent p.S24S 0.45 TCGA-VQ-A94O-01 19 44130956 44130956 C T CADM4 Missense_Mutation p.R160Q 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-VQ-A94O-01 19 45515456 45515456 C T RELB Silent p.Y142Y 0.12 TCGA-VQ-A94O-01 19 45918161 45918161 C T ERCC1 Silent p.A220A 0.20 TCGA-VQ-A94O-01 19 48018121 48018121 G A NAPA Missense_Mutation p.S26F 0.19 tolerated(0.05) probably_damaging(0.923) TCGA-VQ-A94O-01 19 8922273 8922273 C T ZNF558 Missense_Mutation p.G298E 0.34 deleterious(0) probably_damaging(1) TCGA-VQ-A94O-01 1 145816703 145816703 G A GPR89A Missense_Mutation p.T47M 0.37 deleterious(0) benign(0.418) TCGA-VQ-A94O-01 1 186276742 186276742 A G PRG4 Missense_Mutation p.K631E 0.10 unknown(0) TCGA-VQ-A94O-01 1 190067554 190067554 C T BRINP3 Missense_Mutation p.R632H 0.13 deleterious(0.02) probably_damaging(0.996) TCGA-VQ-A94O-01 1 222717501 222717501 C T HHIPL2 Missense_Mutation p.D118N 0.11 deleterious(0) probably_damaging(0.941) TCGA-VQ-A94O-01 1 248616138 248616138 G A OR2T2 Missense_Mutation p.V14I 0.37 tolerated(1) benign(0) TCGA-VQ-A94O-01 1 45292355 45292355 G T PTCH2 Silent p.I927I 0.47 TCGA-VQ-A94O-01 1 6214783 6214783 C T CHD5 Missense_Mutation p.V228I 0.56 tolerated_low_confidence(0.4) benign(0.001) TCGA-VQ-A94O-01 20 25187901 25187901 C T ENTPD6 Missense_Mutation p.R82W 0.47 deleterious(0.01) benign(0.009) TCGA-VQ-A94O-01 20 42089570 42089570 C A SRSF6 Missense_Mutation p.S301Y 0.27 deleterious_low_confidence(0) benign(0.184) TCGA-VQ-A94O-01 20 42168942 42168942 C T L3MBTL1 Silent p.I753I 0.12 TCGA-VQ-A94O-01 20 44533712 44533712 G A PLTP Missense_Mutation p.R251W 0.29 tolerated(0.16) benign(0.015) TCGA-VQ-A94O-01 20 47641885 47641885 G A ARFGEF2 Silent p.T1597T 0.13 TCGA-VQ-A94O-01 20 56098835 56098835 A G CTCFL Missense_Mutation p.Y143H 0.15 tolerated(0.07) probably_damaging(0.944) TCGA-VQ-A94O-01 20 61947959 61947959 G A COL20A1 Missense_Mutation p.R860Q 0.21 tolerated(0.11) benign(0.014) TCGA-VQ-A94O-01 20 62187947 62187951 GGGCC - C20orf195 Frame_Shift_Del p.G311Rfs*17 0.09 TCGA-VQ-A94O-01 22 40417472 40417472 C T FAM83F Nonsense_Mutation p.R320* 0.36 TCGA-VQ-A94O-01 2 121747789 121747789 G A GLI2 Silent p.P1433P 0.33 TCGA-VQ-A94O-01 2 141264487 141264487 G T LRP1B Missense_Mutation p.A2800D 0.59 possibly_damaging(0.665) TCGA-VQ-A94O-01 2 141625259 141625259 G A LRP1B Silent p.S1493S 0.05 TCGA-VQ-A94O-01 2 162891691 162891691 G A DPP4 Missense_Mutation p.R253W 0.30 tolerated(0.1) benign(0.007) TCGA-VQ-A94O-01 2 163228386 163228386 C T KCNH7 Missense_Mutation p.V1182M 0.32 tolerated_low_confidence(0.12) benign(0.046) TCGA-VQ-A94O-01 2 170063489 170063489 G A LRP2 Silent p.Y2247Y 0.12 TCGA-VQ-A94O-01 2 211068150 211068150 C T ACADL Missense_Mutation p.D297N 0.14 tolerated(0.13) benign(0.008) TCGA-VQ-A94O-01 2 215840668 215840668 C T ABCA12 Missense_Mutation p.R1741H 0.19 deleterious(0) probably_damaging(0.999) TCGA-VQ-A94O-01 2 219692035 219692035 G A PRKAG3 Missense_Mutation p.P313S 0.24 tolerated(0.08) probably_damaging(0.911) TCGA-VQ-A94O-01 2 30142953 30142953 G A ALK Silent p.P191P 0.15 TCGA-VQ-A94O-01 2 44513057 44513057 G A SLC3A1 Intron 0.18 TCGA-VQ-A94O-01 3 126154452 126154452 T G CCDC37 Missense_Mutation p.L560R 0.74 deleterious(0) probably_damaging(0.955) TCGA-VQ-A94O-01 3 172643208 172643208 G C SPATA16 Missense_Mutation p.L386V 0.17 deleterious(0) possibly_damaging(0.567) TCGA-VQ-A94O-01 3 185316753 185316753 C T SENP2 Missense_Mutation p.S100L 0.71 deleterious(0) benign(0.159) TCGA-VQ-A94O-01 3 186459695 186459695 G A KNG1 Missense_Mutation p.G504R 0.76 deleterious(0.01) possibly_damaging(0.654) TCGA-VQ-A94O-01 3 54930788 54930788 A T CACNA2D3 Missense_Mutation p.K753N 0.28 tolerated(0.05) benign(0.034) TCGA-VQ-A94O-01 3 62648015 62648015 G A CADPS Silent p.L315L 0.13 TCGA-VQ-A94O-01 6 157469874 157469874 C T ARID1B Missense_Mutation p.P890S 0.44 probably_damaging(0.968) TCGA-VQ-A94O-01 6 161173294 161173294 T C PLG Splice_Site p.X757_splice 0.31 TCGA-VQ-A94O-01 6 26197399 26197399 C G HIST1H3D Missense_Mutation p.R27P 0.08 deleterious_low_confidence(0.01) benign(0.015) TCGA-VQ-A94O-01 6 26413922 26413924 AAG - BTN3A1 3'UTR 0.40 TCGA-VQ-A94O-01 6 31937747 31937747 G T DXO Missense_Mutation p.H366Q 0.55 tolerated(0.06) probably_damaging(0.967) TCGA-VQ-A94O-01 7 100676908 100676908 G T MUC17 Missense_Mutation p.M737I 0.49 benign(0.168) TCGA-VQ-A94O-01 7 158325435 158325435 C T PTPRN2 Intron 0.16 TCGA-VQ-A94O-01 7 926259 926259 G A GET4 Silent p.A96A 0.19 TCGA-VQ-A94O-01 8 139672722 139672722 C A COL22A1 Missense_Mutation p.G1081V 0.10 unknown(0) TCGA-VQ-A94O-01 8 145999176 145999176 G A ZNF34 Silent p.T386T 0.12 TCGA-VQ-A94O-01 8 27296911 27296911 G A PTK2B Missense_Mutation p.M610I 0.40 deleterious(0) probably_damaging(0.991) TCGA-VQ-A94O-01 8 61654357 61654357 G A CHD7 Silent p.Q122Q 0.25 TCGA-VQ-A94O-01 9 127262896 127262896 C T NR5A1 Missense_Mutation p.A115T 0.07 tolerated(0.23) benign(0.441) TCGA-VQ-A94O-01 9 128086098 128086098 C T GAPVD1 Missense_Mutation p.S585L 0.38 tolerated(0.08) probably_damaging(0.995) TCGA-VQ-A94O-01 X 136112692 136112692 C T GPR101 Missense_Mutation p.R381H 0.82 deleterious(0.03) benign(0.071) TCGA-VQ-A94O-01 X 144905745 144905745 C T SLITRK2 Missense_Mutation p.S601L 0.39 tolerated(0.08) benign(0) TCGA-VQ-A94O-01 X 151818931 151818931 G A GABRQ Silent p.R263R 0.77 TCGA-VQ-A94O-01 X 18264852 18264852 T C SCML2 Missense_Mutation p.N556S 0.44 tolerated(1) benign(0.003) TCGA-VQ-A94O-01 X 24580183 24580183 G T PCYT1B 3'UTR 1.00 TCGA-VQ-A94P-01 10 100904042 100904042 A C HPSE2 Missense_Mutation p.L188R 0.07 deleterious(0) probably_damaging(0.987) TCGA-VQ-A94P-01 10 17196685 17196685 C A TRDMT1 Missense_Mutation p.E312D 0.14 tolerated(0.42) benign(0.004) TCGA-VQ-A94P-01 10 68687666 68687666 A T LRRTM3 Missense_Mutation p.K331I 0.09 deleterious(0) probably_damaging(0.961) TCGA-VQ-A94P-01 10 88459229 88459229 A G LDB3 Intron 0.16 TCGA-VQ-A94P-01 11 117265716 117265716 C A CEP164 Silent p.V947V 0.05 TCGA-VQ-A94P-01 11 121028889 121028889 A G TECTA Missense_Mutation p.I1549V 0.10 tolerated(0.22) probably_damaging(0.965) TCGA-VQ-A94P-01 11 123777232 123777232 T C OR8D4 Silent p.L32L 0.05 TCGA-VQ-A94P-01 11 20940821 20940821 T C NELL1 Silent p.L234L 0.06 TCGA-VQ-A94P-01 11 21592317 21592317 A G NELL1 Missense_Mutation p.K663R 0.07 tolerated(0.36) benign(0.002) TCGA-VQ-A94P-01 11 33053936 33053936 T C DEPDC7 Missense_Mutation p.L350S 0.05 deleterious(0) possibly_damaging(0.764) TCGA-VQ-A94P-01 11 89531678 89531678 T G TRIM49 Missense_Mutation p.S327R 0.14 tolerated(0.18) benign(0.025) TCGA-VQ-A94P-01 12 11506284 11506284 A G PRB1 Silent p.P118P 0.05 TCGA-VQ-A94P-01 12 125437084 125437084 C T DHX37 Missense_Mutation p.V910M 0.07 deleterious(0.04) possibly_damaging(0.627) TCGA-VQ-A94P-01 12 21918939 21918939 T G KCNJ8 Missense_Mutation p.E331D 0.09 tolerated(0.14) possibly_damaging(0.889) TCGA-VQ-A94P-01 12 49579655 49579655 G C TUBA1A Missense_Mutation p.S165C 0.07 deleterious_low_confidence(0.03) probably_damaging(0.977) TCGA-VQ-A94P-01 12 69136211 69136211 T G NUP107 Missense_Mutation p.L916R 0.08 deleterious(0.01) possibly_damaging(0.706) TCGA-VQ-A94P-01 13 102368031 102368031 T C ITGBL1 3'UTR 0.10 TCGA-VQ-A94P-01 14 86089357 86089357 A C FLRT2 Missense_Mutation p.N500T 0.09 deleterious(0.03) benign(0.004) TCGA-VQ-A94P-01 15 24922914 24922914 A G NPAP1 Missense_Mutation p.S634G 0.06 deleterious(0.04) benign(0.017) TCGA-VQ-A94P-01 16 18859225 18859225 T A SMG1 Silent p.G1918G 0.05 TCGA-VQ-A94P-01 16 50384074 50384074 C G BRD7 Missense_Mutation p.D151H 0.13 deleterious(0) probably_damaging(1) TCGA-VQ-A94P-01 16 56652577 56652577 C T MT1L RNA 0.06 TCGA-VQ-A94P-01 16 65016134 65016134 T G CDH11 Missense_Mutation p.K357T 0.07 deleterious(0.01) benign(0.223) TCGA-VQ-A94P-01 16 67670658 67670658 G A CTCF Missense_Mutation p.E635K 0.05 tolerated_low_confidence(0.33) benign(0.007) TCGA-VQ-A94P-01 17 10303758 10303758 C A MYH8 Missense_Mutation p.K1228N 0.07 deleterious(0) possibly_damaging(0.845) TCGA-VQ-A94P-01 17 7577547 7577547 C T TP53 Missense_Mutation p.G245D 0.07 deleterious(0) probably_damaging(1) TCGA-VQ-A94P-01 18 48255571 48255571 C T MAPK4 Missense_Mutation p.R371W 0.11 deleterious(0.01) possibly_damaging(0.549) TCGA-VQ-A94P-01 18 6851109 6851109 A T ARHGAP28 Missense_Mutation p.K48M 0.13 tolerated(0.06) benign(0.264) TCGA-VQ-A94P-01 18 6890071 6890071 A C ARHGAP28 Missense_Mutation p.K415T 0.12 tolerated(0.08) benign(0.044) TCGA-VQ-A94P-01 18 74637278 74637278 G A ZNF236 Silent p.S1263S 0.06 TCGA-VQ-A94P-01 18 8784095 8784095 G A SOGA2 Missense_Mutation p.G329R 0.11 tolerated(0.06) possibly_damaging(0.46) TCGA-VQ-A94P-01 19 18368382 18368382 T G KIAA1683 Silent p.R1238R 0.15 TCGA-VQ-A94P-01 19 42730595 42730595 G T ZNF526 3'UTR 0.06 TCGA-VQ-A94P-01 19 55179174 55179174 C G LILRB4 Missense_Mutation p.S377C 0.09 deleterious(0.01) possibly_damaging(0.707) TCGA-VQ-A94P-01 19 58850366 58850366 G A ZSCAN22 Missense_Mutation p.A384T 0.05 deleterious(0.05) benign(0.001) TCGA-VQ-A94P-01 19 8595203 8595203 G A MYO1F Silent p.I735I 0.06 TCGA-VQ-A94P-01 19 9089509 9089509 A C MUC16 Missense_Mutation p.V769G 0.04 unknown(0) TCGA-VQ-A94P-01 1 151316984 151316984 G A RFX5 Missense_Mutation p.R128C 0.08 deleterious(0) probably_damaging(0.998) TCGA-VQ-A94P-01 1 158725528 158725528 T C OR6K6 Missense_Mutation p.L308P 0.06 deleterious(0) probably_damaging(0.976) TCGA-VQ-A94P-01 1 216373317 216373317 T G USH2A Missense_Mutation p.S1155R 0.07 benign(0.392) TCGA-VQ-A94P-01 1 216680519 216680519 A G ESRRG Missense_Mutation p.M392T 0.04 tolerated(0.24) benign(0.074) TCGA-VQ-A94P-01 1 228481066 228481066 A G OBSCN Missense_Mutation p.K4056R 0.06 benign(0.002) TCGA-VQ-A94P-01 1 23689094 23689094 G A ZNF436 Missense_Mutation p.R261W 0.05 tolerated(0.19) probably_damaging(0.965) TCGA-VQ-A94P-01 20 61588811 61588811 C T SLC17A9 Silent p.V92V 0.17 TCGA-VQ-A94P-01 21 10862965 10862965 C T IGHV1OR21-1 Silent p.V87V 0.03 TCGA-VQ-A94P-01 21 15538757 15538757 T C LIPI Missense_Mutation p.E241G 0.08 tolerated(0.14) possibly_damaging(0.888) TCGA-VQ-A94P-01 21 31812984 31812984 A G KRTAP15-1 Silent p.Q113Q 0.07 TCGA-VQ-A94P-01 21 41423956 41423956 G T DSCAM Missense_Mutation p.T1705K 0.08 deleterious(0.01) benign(0.326) TCGA-VQ-A94P-01 21 44188336 44188336 C T PDE9A Silent p.N465N 0.05 TCGA-VQ-A94P-01 22 17443660 17443660 C T GAB4 Missense_Mutation p.R563Q 0.11 deleterious(0.02) possibly_damaging(0.602) TCGA-VQ-A94P-01 2 128347770 128347770 G A MYO7B Missense_Mutation p.R653H 0.10 deleterious(0) probably_damaging(0.961) TCGA-VQ-A94P-01 2 141625248 141625248 T G LRP1B Missense_Mutation p.K1497T 0.08 benign(0.003) TCGA-VQ-A94P-01 2 162761312 162761312 A C SLC4A10 Silent p.A548A 0.08 TCGA-VQ-A94P-01 2 192194703 192194703 A C MYO1B Missense_Mutation p.Q98H 0.05 tolerated(0.08) possibly_damaging(0.905) TCGA-VQ-A94P-01 2 207174170 207174170 T C ZDBF2 Missense_Mutation p.S1640P 0.06 tolerated(0.08) benign(0.307) TCGA-VQ-A94P-01 2 21229752 21229752 A C APOB Missense_Mutation p.F3330V 0.07 benign(0.194) TCGA-VQ-A94P-01 2 212578351 212578351 A C ERBB4 Missense_Mutation p.S302R 0.12 deleterious(0) possibly_damaging(0.464) TCGA-VQ-A94P-01 2 215815661 215815661 A C ABCA12 Missense_Mutation p.L2265R 0.07 tolerated(0.7) probably_damaging(0.98) TCGA-VQ-A94P-01 2 31147067 31147067 G T GALNT14 Missense_Mutation p.S438Y 0.05 deleterious(0) probably_damaging(0.967) TCGA-VQ-A94P-01 2 79365142 79365142 G C REG1P RNA 0.08 TCGA-VQ-A94P-01 2 80782971 80782971 T G CTNNA2 Missense_Mutation p.V565G 0.05 tolerated(0.24) benign(0.085) TCGA-VQ-A94P-01 3 126915847 126915847 G A C3orf56 Missense_Mutation p.G107S 0.04 deleterious(0.03) probably_damaging(0.931) TCGA-VQ-A94P-01 3 150396249 150396249 T G FAM194A Silent p.R402R 0.05 TCGA-VQ-A94P-01 3 186953694 186953694 G A MASP1 Silent p.G655G 0.07 TCGA-VQ-A94P-01 3 74419075 74419075 A C CNTN3 Silent p.G242G 0.10 TCGA-VQ-A94P-01 3 88039930 88039930 T C HTR1F Silent p.L11L 0.04 TCGA-VQ-A94P-01 4 166403503 166403503 C T CPE Missense_Mutation p.T261M 0.05 deleterious(0) probably_damaging(0.993) TCGA-VQ-A94P-01 4 37592515 37592515 G A C4orf19 Missense_Mutation p.D280N 0.05 tolerated(0.6) unknown(0) TCGA-VQ-A94P-01 4 87735700 87735700 A C PTPN13 Missense_Mutation p.K2490T 0.11 deleterious_low_confidence(0.01) unknown(0) TCGA-VQ-A94P-01 5 13841175 13841175 T G DNAH5 Missense_Mutation p.K1850T 0.07 benign(0.403) TCGA-VQ-A94P-01 5 178359168 178359168 T G ZFP2 Missense_Mutation p.L285R 0.04 deleterious(0) probably_damaging(1) TCGA-VQ-A94P-01 5 178540985 178540985 T G ADAMTS2 Missense_Mutation p.E1173D 0.07 tolerated_low_confidence(0.38) benign(0.003) TCGA-VQ-A94P-01 5 39393455 39393455 T C DAB2 Silent p.K44K 0.05 TCGA-VQ-A94P-01 5 63256294 63256294 T A HTR1A Missense_Mutation p.K418M 0.04 deleterious(0) probably_damaging(0.959) TCGA-VQ-A94P-01 5 7626396 7626396 G A ADCY2 Silent p.S229S 0.05 TCGA-VQ-A94P-01 6 152697990 152697990 G T SYNE1 Missense_Mutation p.L3023M 0.09 probably_damaging(0.999) TCGA-VQ-A94P-01 6 87726147 87726147 T G HTR1E Silent p.T365T 0.07 TCGA-VQ-A94P-01 7 108213373 108213373 G A DNAJB9 Missense_Mutation p.R83Q 0.07 deleterious(0) probably_damaging(0.999) TCGA-VQ-A94P-01 7 110764714 110764714 T G LRRN3 Missense_Mutation p.L629R 0.07 deleterious(0) benign(0.143) TCGA-VQ-A94P-01 7 143633278 143633278 G C OR2F2 Nonstop_Mutation p.*318Sext*? 0.06 TCGA-VQ-A94P-01 7 82545333 82545333 G T PCLO Missense_Mutation p.P3990H 0.07 unknown(0) TCGA-VQ-A94P-01 7 87179322 87179322 G A ABCB1 Missense_Mutation p.R467W 0.10 deleterious(0) probably_damaging(1) TCGA-VQ-A94P-01 8 106815038 106815038 G A ZFPM2 Missense_Mutation p.E910K 0.19 tolerated_low_confidence(0.12) benign(0.116) TCGA-VQ-A94P-01 8 109240530 109240530 C A EIF3E Missense_Mutation p.D230Y 0.16 deleterious(0.03) probably_damaging(0.995) TCGA-VQ-A94P-01 8 134225204 134225204 C T WISP1 Missense_Mutation p.P56L 0.14 deleterious(0.01) probably_damaging(1) TCGA-VQ-A94P-01 8 55537310 55537310 T G RP1 Missense_Mutation p.L290V 0.08 deleterious(0) benign(0.011) TCGA-VQ-A94P-01 8 72123487 72123487 T G EYA1 Missense_Mutation p.K534N 0.13 deleterious(0) probably_damaging(1) TCGA-VQ-A94P-01 8 73984034 73984034 T G SBSPON Missense_Mutation p.T161P 0.08 tolerated(0.23) benign(0.165) TCGA-VQ-A94P-01 X 101382220 101382220 A C TCEAL2 Silent p.R140R 0.08 TCGA-VQ-A94P-01 X 127185795 127185795 T C ACTRT1 Missense_Mutation p.S131G 0.10 tolerated(0.12) benign(0.04) TCGA-VQ-A94P-01 X 135431666 135431666 T A GPR112 Missense_Mutation p.V1934D 0.08 deleterious(0) benign(0.289) TCGA-VQ-A94P-01 X 151303274 151303274 T G MAGEA10 Missense_Mutation p.Q273H 0.10 deleterious(0.04) benign(0.011) TCGA-VQ-A94P-01 X 151900057 151900057 T G MAGEA12 Missense_Mutation p.Q248H 0.14 tolerated(0.12) benign(0.083) TCGA-VQ-A94P-01 X 151935452 151935452 A C MAGEA3 Missense_Mutation p.L239V 0.07 deleterious(0) benign(0.04) TCGA-VQ-A94P-01 X 30254319 30254319 A G MAGEB3 Missense_Mutation p.K93R 0.12 tolerated(0.92) benign(0.012) TCGA-VQ-A94P-01 X 38268006 38268006 G A OTC Silent p.P225P 0.10 TCGA-VQ-A94P-01 X 50054242 50054242 T A CCNB3 Missense_Mutation p.L1025M 0.09 deleterious(0.05) possibly_damaging(0.665) TCGA-VQ-A94P-01 X 73961966 73961966 A C KIAA2022 Missense_Mutation p.V809G 0.20 deleterious(0) probably_damaging(0.986) TCGA-VQ-A94P-01 X 75004272 75004272 T A MAGEE2 Missense_Mutation p.K205N 0.06 deleterious(0) probably_damaging(0.998) TCGA-VQ-A94P-01 X 96171555 96171555 T G DIAPH2 Missense_Mutation p.I284S 0.21 deleterious(0.01) unknown(0) TCGA-VQ-A94R-01 10 102505927 102505927 C T PAX2 5'UTR 0.05 TCGA-VQ-A94R-01 10 102762201 102762201 G T LZTS2 5'UTR 0.40 TCGA-VQ-A94R-01 10 11971952 11971952 G A UPF2 Missense_Mutation p.P1241S 0.29 tolerated(0.64) possibly_damaging(0.806) TCGA-VQ-A94R-01 10 14939017 14939017 A G SUV39H2 Missense_Mutation p.K117R 0.30 tolerated(0.54) benign(0.265) TCGA-VQ-A94R-01 10 25314201 25314201 A C THNSL1 Missense_Mutation p.E683D 0.32 tolerated(0.45) benign(0.008) TCGA-VQ-A94R-01 10 29801694 29801694 G A SVIL Silent p.T1162T 0.27 TCGA-VQ-A94R-01 10 32101703 32101703 T G ARHGAP12 Missense_Mutation p.K628T 0.30 tolerated(1) benign(0.001) TCGA-VQ-A94R-01 10 32560976 32560976 C T EPC1 Silent p.V684V 0.11 TCGA-VQ-A94R-01 10 43316428 43316428 C - BMS1 Frame_Shift_Del p.S1000Vfs*3 0.21 TCGA-VQ-A94R-01 10 45799199 45799199 G A OR13A1 Silent p.Y224Y 0.32 TCGA-VQ-A94R-01 10 46113627 46113627 C A ZFAND4 Missense_Mutation p.C670F 0.22 deleterious(0) probably_damaging(0.999) TCGA-VQ-A94R-01 10 50531336 50531336 A G C10orf71 Missense_Mutation p.K249R 0.30 tolerated(0.45) benign(0.013) TCGA-VQ-A94R-01 10 5784211 5784211 A C FAM208B Missense_Mutation p.N827H 0.33 deleterious(0.03) probably_damaging(0.998) TCGA-VQ-A94R-01 10 64966911 64966911 A G JMJD1C Silent p.A1506A 0.39 TCGA-VQ-A94R-01 10 7285588 7285588 G T SFMBT2 Missense_Mutation p.A351E 0.31 deleterious(0.03) possibly_damaging(0.771) TCGA-VQ-A94R-01 10 90438361 90438361 G C LIPF Missense_Mutation p.D384H 0.47 deleterious(0) probably_damaging(0.997) TCGA-VQ-A94R-01 10 91174453 91174453 C G IFIT5 5'UTR 0.50 TCGA-VQ-A94R-01 10 97442864 97442864 T G TCTN3 Missense_Mutation p.K431T 0.21 tolerated(0.2) benign(0.024) TCGA-VQ-A94R-01 10 99349667 99349667 C T C10orf62 Nonsense_Mutation p.Q5* 0.13 TCGA-VQ-A94R-01 10 99376977 99376977 G C MORN4 Nonsense_Mutation p.S57* 0.38 TCGA-VQ-A94R-01 11 124615405 124615405 G A NRGN Missense_Mutation p.A8T 0.51 tolerated(0.16) unknown(0) TCGA-VQ-A94R-01 11 125478099 125478099 A G STT3A Silent p.P292P 0.15 TCGA-VQ-A94R-01 11 133794727 133794727 C T IGSF9B Missense_Mutation p.V703I 0.16 tolerated(0.06) possibly_damaging(0.458) TCGA-VQ-A94R-01 11 30033223 30033223 C T KCNA4 Missense_Mutation p.D335N 0.23 tolerated(0.09) benign(0.004) TCGA-VQ-A94R-01 11 33569366 33569366 G A KIAA1549L Missense_Mutation p.A851T 0.45 tolerated(0.36) benign(0.067) TCGA-VQ-A94R-01 11 3681485 3681485 T C ART1 Missense_Mutation p.F246L 0.16 deleterious(0.01) probably_damaging(0.909) TCGA-VQ-A94R-01 11 46911006 46911006 C A LRP4 Missense_Mutation p.C724F 0.36 deleterious(0) probably_damaging(1) TCGA-VQ-A94R-01 11 56230159 56230159 C A OR5M9 Missense_Mutation p.G240V 0.16 deleterious(0.02) possibly_damaging(0.831) TCGA-VQ-A94R-01 11 56237808 56237808 G C OR5M3 Missense_Mutation p.P56A 0.14 deleterious(0.01) benign(0.323) TCGA-VQ-A94R-01 11 56511130 56511130 G C OR9G4 Missense_Mutation p.T53S 0.12 tolerated(0.13) possibly_damaging(0.459) TCGA-VQ-A94R-01 11 59190146 59190146 G A OR5A2 Missense_Mutation p.S94F 0.38 deleterious(0) probably_damaging(0.968) TCGA-VQ-A94R-01 11 5968868 5968868 T G OR56A3 Missense_Mutation p.F98V 0.56 deleterious(0.01) possibly_damaging(0.755) TCGA-VQ-A94R-01 11 63986763 63986763 G A FERMT3 Missense_Mutation p.R276Q 0.28 deleterious(0) probably_damaging(0.994) TCGA-VQ-A94R-01 11 6452878 6452878 G A HPX Silent p.I374I 0.55 TCGA-VQ-A94R-01 11 76901818 76901818 C T MYO7A Missense_Mutation p.S1276L 0.19 deleterious(0) probably_damaging(0.997) TCGA-VQ-A94R-01 11 89060038 89060038 T A NOX4 Silent p.T541T 0.24 TCGA-VQ-A94R-01 11 9069642 9069642 T G SCUBE2 Missense_Mutation p.K548T 0.69 tolerated(0.5) benign(0.197) TCGA-VQ-A94R-01 12 105536973 105536973 G A KIAA1033 Silent p.E654E 0.09 TCGA-VQ-A94R-01 12 112605242 112605242 G A HECTD4 Missense_Mutation p.P3992L 0.29 probably_damaging(0.999) TCGA-VQ-A94R-01 12 112622706 112622706 T A HECTD4 Missense_Mutation p.H3209L 0.34 probably_damaging(0.991) TCGA-VQ-A94R-01 12 112672944 112672944 A G HECTD4 Missense_Mutation p.L1805P 0.50 benign(0.087) TCGA-VQ-A94R-01 12 112681221 112681221 C T HECTD4 Missense_Mutation p.V1486I 0.32 possibly_damaging(0.886) TCGA-VQ-A94R-01 12 114793801 114793801 C T TBX5 Missense_Mutation p.G365S 0.38 tolerated(1) benign(0) TCGA-VQ-A94R-01 12 121206209 121206209 A G SPPL3 Missense_Mutation p.L231P 0.13 deleterious(0) probably_damaging(0.914) TCGA-VQ-A94R-01 12 129559129 129559129 T G TMEM132D Missense_Mutation p.K864T 0.40 tolerated(0.31) benign(0.026) TCGA-VQ-A94R-01 12 132562208 132562208 C T EP400 Missense_Mutation p.P3121L 0.35 possibly_damaging(0.859) TCGA-VQ-A94R-01 12 250164 250164 G T IQSEC3 Intron 0.27 TCGA-VQ-A94R-01 12 29617461 29617461 C T OVCH1 Missense_Mutation p.G702R 0.39 deleterious(0) probably_damaging(1) TCGA-VQ-A94R-01 12 39716484 39716484 A C KIF21A Silent p.S1219S 0.19 TCGA-VQ-A94R-01 12 56565716 56565716 C T SMARCC2 Silent p.L613L 0.33 TCGA-VQ-A94R-01 12 65564687 65564707 GAAAAACACATACAACAAACC - LEMD3 In_Frame_Del p.N439_K445del 0.14 TCGA-VQ-A94R-01 12 7241497 7241497 A T C1R Missense_Mutation p.L284Q 0.21 deleterious(0) probably_damaging(0.978) TCGA-VQ-A94R-01 12 7585051 7585051 C T CD163L1 Missense_Mutation p.D243N 0.30 tolerated(0.43) benign(0.378) TCGA-VQ-A94R-01 12 9021780 9021780 T G A2ML1 Missense_Mutation p.L1401R 0.28 deleterious(0) probably_damaging(0.99) TCGA-VQ-A94R-01 12 9242583 9242583 T C A2M Missense_Mutation p.E878G 0.32 deleterious(0.01) benign(0.017) TCGA-VQ-A94R-01 12 9254056 9254056 G A A2M Missense_Mutation p.S494F 0.27 deleterious(0.02) benign(0.197) TCGA-VQ-A94R-01 13 101320836 101320836 A C TMTC4 Missense_Mutation p.N72K 0.28 deleterious(0) probably_damaging(1) TCGA-VQ-A94R-01 13 19752407 19752407 G C TUBA3C Silent p.V118V 0.21 TCGA-VQ-A94R-01 13 25466879 25466879 C T CENPJ Missense_Mutation p.E1040K 0.28 deleterious(0) possibly_damaging(0.722) TCGA-VQ-A94R-01 13 29600277 29600277 C T MTUS2 Missense_Mutation p.T491M 0.30 tolerated(0.07) possibly_damaging(0.668) TCGA-VQ-A94R-01 13 32776177 32776177 G A FRY Silent p.Q1282Q 0.11 TCGA-VQ-A94R-01 13 37618235 37618235 C T SUPT20H Missense_Mutation p.D126N 0.33 tolerated(0.09) possibly_damaging(0.893) TCGA-VQ-A94R-01 13 48669196 48669196 C T MED4 Missense_Mutation p.G7S 0.08 tolerated_low_confidence(0.61) unknown(0) TCGA-VQ-A94R-01 14 100742891 100742891 G C YY1 Missense_Mutation p.R323T 0.17 deleterious(0) probably_damaging(0.988) TCGA-VQ-A94R-01 14 105408839 105408839 T G AHNAK2 Missense_Mutation p.I4317L 0.28 benign(0.032) TCGA-VQ-A94R-01 14 23517497 23517497 C T CDH24 Missense_Mutation p.A718T 0.57 tolerated(0.59) benign(0.003) TCGA-VQ-A94R-01 14 59819291 59819291 A T DAAM1 Missense_Mutation p.E746D 0.33 tolerated(0.08) probably_damaging(0.954) TCGA-VQ-A94R-01 14 64936185 64936185 T C AKAP5 Missense_Mutation p.V358A 0.11 deleterious(0.01) probably_damaging(0.991) TCGA-VQ-A94R-01 14 76117969 76117969 T G C14orf1 Missense_Mutation p.I118L 0.09 tolerated(0.64) benign(0.002) TCGA-VQ-A94R-01 14 80164075 80164075 G C NRXN3 Missense_Mutation p.G867A 0.26 deleterious(0) benign(0) TCGA-VQ-A94R-01 14 99865312 99865312 C T SETD3 Missense_Mutation p.A497T 0.50 tolerated(0.21) possibly_damaging(0.483) TCGA-VQ-A94R-01 15 43045268 43045268 T G TTBK2 Missense_Mutation p.S726R 0.33 deleterious_low_confidence(0) benign(0.19) TCGA-VQ-A94R-01 15 48733925 48733925 C A FBN1 Missense_Mutation p.R2052S 0.41 possibly_damaging(0.622) TCGA-VQ-A94R-01 15 52065966 52065966 C T TMOD2 Missense_Mutation p.T114I 0.29 tolerated(0.11) benign(0.392) TCGA-VQ-A94R-01 15 62244165 62244165 C T VPS13C Silent p.L1438L 0.29 TCGA-VQ-A94R-01 15 65316040 65316040 C T MTFMT Missense_Mutation p.G171E 0.36 deleterious(0) probably_damaging(0.999) TCGA-VQ-A94R-01 15 65890700 65890700 A T VWA9 Missense_Mutation p.V179E 0.32 tolerated(0.96) benign(0.034) TCGA-VQ-A94R-01 15 70960090 70960090 T G UACA Missense_Mutation p.Q978P 0.16 deleterious(0) benign(0.375) TCGA-VQ-A94R-01 15 78210819 78210819 T G RP11-114H24.7 Intron 0.39 TCGA-VQ-A94R-01 15 89399041 89399041 A C ACAN Missense_Mutation p.E1075D 0.47 tolerated(0.16) unknown(0) TCGA-VQ-A94R-01 15 89400124 89400124 A T ACAN Missense_Mutation p.E1436D 0.37 tolerated(0.54) benign(0.062) TCGA-VQ-A94R-01 15 90274702 90274702 G A WDR93 Silent p.A413A 0.29 TCGA-VQ-A94R-01 15 91461436 91461436 C T MAN2A2 Missense_Mutation p.H1003Y 0.23 tolerated(0.06) benign(0.154) TCGA-VQ-A94R-01 15 99465452 99465452 C T IGF1R Silent p.A759A 0.30 TCGA-VQ-A94R-01 16 18879855 18879855 G A SMG1 Missense_Mutation p.S1007L 0.29 deleterious(0.05) benign(0.084) TCGA-VQ-A94R-01 16 2329084 2329084 G A ABCA3 Silent p.D1469D 0.28 TCGA-VQ-A94R-01 16 27357932 27357932 C T IL4R Missense_Mutation p.P169L 0.36 deleterious(0) benign(0.164) TCGA-VQ-A94R-01 16 28330464 28330464 C A SBK1 Silent p.V125V 0.36 TCGA-VQ-A94R-01 16 30035023 30035025 GTC - C16orf92 In_Frame_Del p.V36del 0.17 TCGA-VQ-A94R-01 16 31235977 31235977 G T TRIM72 Silent p.L445L 0.36 TCGA-VQ-A94R-01 16 57147318 57147318 A C CPNE2 Missense_Mutation p.K100T 0.15 tolerated(0.09) benign(0.009) TCGA-VQ-A94R-01 16 67645480 67645480 A G CTCF Missense_Mutation p.M249V 0.59 tolerated(0.12) benign(0.308) TCGA-VQ-A94R-01 16 68013599 68013599 A T DPEP3 Missense_Mutation p.N144K 0.25 tolerated(0.08) benign(0.177) TCGA-VQ-A94R-01 16 75485602 75485602 C T TMEM170A Missense_Mutation p.G90D 0.37 deleterious(0) probably_damaging(0.981) TCGA-VQ-A94R-01 16 77850905 77850905 T C VAT1L Silent p.S107S 0.40 TCGA-VQ-A94R-01 16 81190623 81190623 G A PKD1L2 RNA 0.35 TCGA-VQ-A94R-01 16 84270436 84270436 G A KCNG4 Missense_Mutation p.P219L 0.13 deleterious(0.02) possibly_damaging(0.651) TCGA-VQ-A94R-01 17 19186413 19186413 T G EPN2 5'UTR 0.64 TCGA-VQ-A94R-01 17 19318388 19318388 C A RNF112 Nonsense_Mutation p.Y388* 0.09 TCGA-VQ-A94R-01 17 21319848 21319848 C G KCNJ12 Silent p.G398G 0.09 TCGA-VQ-A94R-01 17 25938601 25938601 C A KSR1 Missense_Mutation p.S698R 0.20 deleterious(0) benign(0.24) TCGA-VQ-A94R-01 17 27963624 27963624 C A SSH2 Missense_Mutation p.D515Y 0.05 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-VQ-A94R-01 17 3801808 3801808 G A P2RX1 Silent p.T334T 0.18 TCGA-VQ-A94R-01 17 40253878 40253878 C A DHX58 Silent p.R646R 0.08 TCGA-VQ-A94R-01 17 46628509 46628509 G A HOXB3 Silent p.G161G 0.26 TCGA-VQ-A94R-01 17 48733217 48733217 G A ABCC3 Missense_Mutation p.E24K 0.22 tolerated(0.09) benign(0.028) TCGA-VQ-A94R-01 17 53068311 53068311 G C STXBP4 Missense_Mutation p.C58S 0.29 deleterious(0.01) possibly_damaging(0.483) TCGA-VQ-A94R-01 17 56540613 56540613 G A HSF5 Missense_Mutation p.P358S 0.43 tolerated(0.39) benign(0.015) TCGA-VQ-A94R-01 17 6386889 6386889 T C PITPNM3 Missense_Mutation p.K179E 0.27 deleterious(0) benign(0.271) TCGA-VQ-A94R-01 17 72768388 72768388 G A NAT9 Silent p.G121G 0.45 TCGA-VQ-A94R-01 17 7320542 7320542 G A NLGN2 Silent p.P644P 0.54 TCGA-VQ-A94R-01 17 73500679 73500679 G A CASKIN2 Missense_Mutation p.P430S 0.26 tolerated(0.34) benign(0.011) TCGA-VQ-A94R-01 17 7576851 7576851 A G TP53 Splice_Site p.X331_splice 0.61 TCGA-VQ-A94R-01 17 76447708 76447708 C T DNAH17 Missense_Mutation p.R3512H 0.19 benign(0.068) TCGA-VQ-A94R-01 17 7751380 7751380 C T KDM6B Nonsense_Mutation p.Q592* 0.30 TCGA-VQ-A94R-01 18 13666505 13666506 - T FAM210A Frame_Shift_Ins p.V265Sfs*4 0.30 TCGA-VQ-A94R-01 18 14542827 14542827 G A POTEC Missense_Mutation p.P107S 0.14 tolerated_low_confidence(0.05) probably_damaging(0.968) TCGA-VQ-A94R-01 18 44015286 44015286 C T RNF165 Missense_Mutation p.R138C 0.42 deleterious(0) possibly_damaging(0.739) TCGA-VQ-A94R-01 18 48510942 48510948 TTTTTTG - ELAC1 Intron 0.39 TCGA-VQ-A94R-01 18 57133994 57133994 C T CCBE1 Missense_Mutation p.G177E 0.46 tolerated(0.07) benign(0.008) TCGA-VQ-A94R-01 18 7010351 7010351 C T LAMA1 Missense_Mutation p.V1241M 0.72 tolerated(0.06) benign(0.378) TCGA-VQ-A94R-01 18 9258422 9258422 A C ANKRD12 Missense_Mutation p.E1719D 0.36 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-VQ-A94R-01 19 14199574 14199574 G A SAMD1 Missense_Mutation p.P350L 0.30 tolerated(0.05) probably_damaging(0.911) TCGA-VQ-A94R-01 19 1466265 1466265 C T APC2 Missense_Mutation p.R989C 0.64 benign(0.002) TCGA-VQ-A94R-01 19 17477004 17477004 C T PLVAP Missense_Mutation p.V124I 0.31 tolerated(0.39) benign(0.022) TCGA-VQ-A94R-01 19 17691633 17691633 G A COLGALT1 Missense_Mutation p.R507H 0.39 tolerated(0.05) benign(0.052) TCGA-VQ-A94R-01 19 19168436 19168436 G A ARMC6 Silent p.%3D 0.48 TCGA-VQ-A94R-01 19 36394317 36394317 A C HCST Silent p.S36S 0.42 TCGA-VQ-A94R-01 19 41754645 41754645 C T AXL Intron 0.77 TCGA-VQ-A94R-01 19 43025629 43025629 G A CEACAM1 Missense_Mutation p.R250C 0.21 tolerated(0.12) possibly_damaging(0.899) TCGA-VQ-A94R-01 19 43359768 43359768 C T PSG10P RNA 0.19 TCGA-VQ-A94R-01 19 44471538 44471538 G T ZNF221 3'UTR 0.27 TCGA-VQ-A94R-01 19 46915781 46915781 G A CCDC8 Missense_Mutation p.T96M 0.25 probably_damaging(0.999) TCGA-VQ-A94R-01 19 46997697 46997697 C G PNMAL2 Silent p.S342S 0.28 TCGA-VQ-A94R-01 19 47278661 47278661 G A SLC1A5 3'UTR 0.14 TCGA-VQ-A94R-01 19 4816476 4816476 A G TICAM1 Silent p.A638A 0.35 TCGA-VQ-A94R-01 19 49164934 49164934 C T NTN5 Silent p.%3D 0.19 TCGA-VQ-A94R-01 19 49573840 49573840 C T KCNA7 Missense_Mutation p.R284H 0.20 deleterious(0) probably_damaging(0.999) TCGA-VQ-A94R-01 19 49934622 49934622 C T SLC17A7 Missense_Mutation p.V412M 0.30 deleterious(0) possibly_damaging(0.752) TCGA-VQ-A94R-01 19 50462006 50462006 C G SIGLEC11 Silent p.G419G 0.04 TCGA-VQ-A94R-01 19 51165667 51165667 G A SHANK1 Missense_Mutation p.A2014V 0.14 unknown(0) TCGA-VQ-A94R-01 19 51729095 51729095 C T CD33 Missense_Mutation p.T152I 0.28 deleterious(0.03) benign(0.051) TCGA-VQ-A94R-01 19 52033696 52033696 C T SIGLEC6 Missense_Mutation p.S250N 0.12 tolerated(0.22) benign(0.046) TCGA-VQ-A94R-01 19 52034591 52034591 C G SIGLEC6 Missense_Mutation p.E84Q 0.17 tolerated(0.15) benign(0.038) TCGA-VQ-A94R-01 19 52222639 52222639 C T HAS1 Silent p.A174A 0.22 TCGA-VQ-A94R-01 19 52498021 52498021 T G ZNF615 Missense_Mutation p.Q114P 0.16 tolerated(0.05) probably_damaging(0.991) TCGA-VQ-A94R-01 19 52619042 52619042 G A ZNF616 Missense_Mutation p.H459Y 0.21 deleterious(0) probably_damaging(0.998) TCGA-VQ-A94R-01 19 5455970 5455970 C T ZNRF4 Silent p.G156G 0.27 TCGA-VQ-A94R-01 19 55106309 55106309 C T LILRA1 Missense_Mutation p.P84S 0.22 tolerated(1) benign(0.035) TCGA-VQ-A94R-01 19 56156051 56156051 C A ZNF581 Silent p.S38S 0.14 TCGA-VQ-A94R-01 19 56223859 56223859 C T NLRP9 Missense_Mutation p.E867K 0.27 tolerated(0.86) benign(0.026) TCGA-VQ-A94R-01 19 57133465 57133465 C T ZNF71 Silent p.Y270Y 0.11 TCGA-VQ-A94R-01 19 58058600 58058600 T C ZNF550 Missense_Mutation p.T297A 0.26 deleterious(0.01) probably_damaging(0.952) TCGA-VQ-A94R-01 19 58945935 58945935 C T ZNF132 Silent p.V292V 0.25 TCGA-VQ-A94R-01 19 9088124 9088124 C T MUC16 Missense_Mutation p.A1231T 0.32 unknown(0) TCGA-VQ-A94R-01 1 100928312 100928312 C G CDC14A Missense_Mutation p.T238R 0.18 deleterious(0.01) benign(0.245) TCGA-VQ-A94R-01 1 111773412 111773412 G A CHI3L2 Missense_Mutation p.R40Q 0.22 deleterious(0.03) possibly_damaging(0.513) TCGA-VQ-A94R-01 1 111784065 111784065 G C CHI3L2 Missense_Mutation p.K345N 0.33 deleterious(0) probably_damaging(1) TCGA-VQ-A94R-01 1 114128167 114128167 G A MAGI3 Missense_Mutation p.E238K 0.08 deleterious(0.03) probably_damaging(0.979) TCGA-VQ-A94R-01 1 114225692 114225692 C T MAGI3 Missense_Mutation p.P1168S 0.11 tolerated_low_confidence(0.07) benign(0.353) TCGA-VQ-A94R-01 1 116936192 116936213 CACCTGTTGGTGATGAAGGGCG - ATP1A1 Frame_Shift_Del p.H503Pfs*6 0.25 TCGA-VQ-A94R-01 1 145115744 145115744 C G SEC22B RNA 0.06 TCGA-VQ-A94R-01 1 152282747 152282747 T C FLG Missense_Mutation p.S1539G 0.40 benign(0.153) TCGA-VQ-A94R-01 1 154543792 154543792 G A CHRNB2 Missense_Mutation p.D165N 0.11 deleterious(0) probably_damaging(1) TCGA-VQ-A94R-01 1 157548298 157548298 C A FCRL4 Missense_Mutation p.E465D 0.41 deleterious(0.04) benign(0.359) TCGA-VQ-A94R-01 1 159036028 159036028 T G AIM2 Missense_Mutation p.K163T 0.32 tolerated(0.16) benign(0.054) TCGA-VQ-A94R-01 1 159900194 159900194 G A IGSF9 Missense_Mutation p.P617S 0.29 tolerated(0.11) benign(0.004) TCGA-VQ-A94R-01 1 160341004 160341004 G A NHLH1 3'UTR 0.44 TCGA-VQ-A94R-01 1 161336022 161336022 C T C1orf192 Missense_Mutation p.R46H 0.44 deleterious(0.01) benign(0.117) TCGA-VQ-A94R-01 1 161495499 161495499 T G HSPA6 Missense_Mutation p.L351V 0.27 deleterious_low_confidence(0) possibly_damaging(0.861) TCGA-VQ-A94R-01 1 179460715 179460715 T G AXDND1 Missense_Mutation p.L712V 0.15 deleterious(0.04) benign(0.029) TCGA-VQ-A94R-01 1 181731749 181731749 A G CACNA1E Missense_Mutation p.T1549A 0.39 deleterious(0) possibly_damaging(0.523) TCGA-VQ-A94R-01 1 183532428 183532428 C T NCF2 Missense_Mutation p.D398N 0.44 tolerated(0.1) probably_damaging(0.944) TCGA-VQ-A94R-01 1 186158894 186158894 C T HMCN1 Nonsense_Mutation p.R5598* 0.26 TCGA-VQ-A94R-01 1 19181156 19181156 G A TAS1R2 Missense_Mutation p.R270C 0.37 deleterious(0) probably_damaging(0.982) TCGA-VQ-A94R-01 1 197887127 197887127 G A LHX9 Silent p.A58A 0.21 TCGA-VQ-A94R-01 1 201751443 201751443 T C NAV1 Silent p.T601T 0.27 TCGA-VQ-A94R-01 1 201924666 201924666 C T TIMM17A Silent p.Y4Y 0.41 TCGA-VQ-A94R-01 1 207222544 207222544 C T YOD1 Missense_Mutation p.D290N 0.15 tolerated(0.11) possibly_damaging(0.788) TCGA-VQ-A94R-01 1 212792949 212792949 T C ATF3 3'UTR 0.17 TCGA-VQ-A94R-01 1 227935632 227935632 C G SNAP47 Missense_Mutation p.F110L 0.13 deleterious(0) probably_damaging(0.999) TCGA-VQ-A94R-01 1 228468467 228468467 G A OBSCN Missense_Mutation p.E3152K 0.25 possibly_damaging(0.717) TCGA-VQ-A94R-01 1 22915940 22915940 G T EPHA8 Intron 0.57 TCGA-VQ-A94R-01 1 232650482 232650482 C A SIPA1L2 Missense_Mutation p.G202C 0.08 deleterious(0) probably_damaging(0.986) TCGA-VQ-A94R-01 1 237863758 237863758 G A RYR2 Missense_Mutation p.D3120N 0.33 probably_damaging(0.994) TCGA-VQ-A94R-01 1 240370371 240370371 G T FMN2 Silent p.G753G 0.34 TCGA-VQ-A94R-01 1 243328308 243328308 C G CEP170 Missense_Mutation p.R985T 0.18 deleterious(0.03) probably_damaging(0.998) TCGA-VQ-A94R-01 1 248263511 248263511 C G OR2L13 Silent p.T278T 0.11 TCGA-VQ-A94R-01 1 31656858 31656858 G A NKAIN1 Missense_Mutation p.R93W 0.13 deleterious(0) possibly_damaging(0.861) TCGA-VQ-A94R-01 1 43783609 43783609 C T TIE1 Missense_Mutation p.R930W 0.40 deleterious(0) probably_damaging(1) TCGA-VQ-A94R-01 1 45244390 45244390 G C RPS8 3'UTR 0.35 TCGA-VQ-A94R-01 1 57756745 57756745 G T DAB1 5'UTR 0.45 TCGA-VQ-A94R-01 1 66102128 66102128 C T LEPR Silent p.D976D 0.44 TCGA-VQ-A94R-01 1 68151112 68151112 G C GADD45A 5'UTR 0.60 TCGA-VQ-A94R-01 1 84399394 84399394 C T TTLL7 Missense_Mutation p.R315Q 0.23 tolerated(0.16) possibly_damaging(0.658) TCGA-VQ-A94R-01 20 1435720 1435720 C T NSFL1C Silent p.K114K 0.18 TCGA-VQ-A94R-01 20 17923777 17923777 C A SNX5 Nonsense_Mutation p.E381* 0.08 TCGA-VQ-A94R-01 20 21687619 21687619 C T PAX1 Missense_Mutation p.A277V 0.24 tolerated(0.07) benign(0.017) TCGA-VQ-A94R-01 20 30064269 30064269 G A REM1 Silent p.Q7Q 0.12 TCGA-VQ-A94R-01 20 33370192 33370192 G A NCOA6 5'UTR 0.09 TCGA-VQ-A94R-01 20 34090523 34090523 A G CEP250 Silent p.G1442G 0.12 TCGA-VQ-A94R-01 20 34091283 34091283 G A CEP250 Missense_Mutation p.G1696S 0.24 benign(0.076) TCGA-VQ-A94R-01 20 34214518 34214518 G A CPNE1 Nonsense_Mutation p.Q487* 0.11 TCGA-VQ-A94R-01 20 34827913 34827913 C T AAR2 Silent p.V41V 0.27 TCGA-VQ-A94R-01 20 37356252 37356252 G C SLC32A1 Missense_Mutation p.R183P 0.18 deleterious(0) probably_damaging(0.995) TCGA-VQ-A94R-01 20 3759122 3759122 G C SPEF1 Silent p.V183V 0.11 TCGA-VQ-A94R-01 20 40044234 40044234 G C CHD6 Missense_Mutation p.H2177Q 0.16 tolerated(0.3) possibly_damaging(0.598) TCGA-VQ-A94R-01 20 40126208 40126208 C T CHD6 Intron 0.27 TCGA-VQ-A94R-01 20 44639151 44639151 G A MMP9 Missense_Mutation p.R134Q 0.18 tolerated(0.41) benign(0.013) TCGA-VQ-A94R-01 20 47874121 47874121 G A ZNFX1 Nonsense_Mutation p.Q833* 0.18 TCGA-VQ-A94R-01 20 60348105 60348105 C T CDH4 Missense_Mutation p.P148L 0.18 tolerated(0.07) benign(0.001) TCGA-VQ-A94R-01 21 30909579 30909579 C T GRIK1 Missense_Mutation p.R941Q 0.59 deleterious_low_confidence(0.01) benign(0.002) TCGA-VQ-A94R-01 21 31709950 31709950 G T KRTAP27-1 Missense_Mutation p.H13N 0.20 tolerated(0.38) benign(0.248) TCGA-VQ-A94R-01 21 39427049 39427049 G A DSCR4 Missense_Mutation p.A86V 0.54 possibly_damaging(0.682) TCGA-VQ-A94R-01 22 22160255 22160255 T A MAPK1 Missense_Mutation p.I126F 0.28 tolerated(0.16) benign(0.386) TCGA-VQ-A94R-01 22 23465638 23465638 G A GNAZ 3'UTR 0.36 TCGA-VQ-A94R-01 22 50632900 50632900 C A TRABD Missense_Mutation p.H82N 0.27 deleterious(0) probably_damaging(1) TCGA-VQ-A94R-01 2 11925098 11925098 G A LPIN1 Missense_Mutation p.G531D 0.24 deleterious(0.01) possibly_damaging(0.747) TCGA-VQ-A94R-01 2 128479497 128479497 G C WDR33 Missense_Mutation p.D528E 0.14 tolerated_low_confidence(0.96) unknown(0) TCGA-VQ-A94R-01 2 131100493 131100493 A G IMP4 5'UTR 0.08 TCGA-VQ-A94R-01 2 139310121 139310121 C T SPOPL Intron 0.22 TCGA-VQ-A94R-01 2 145274984 145274984 G A ZEB2 Intron 0.38 TCGA-VQ-A94R-01 2 149247296 149247296 C G MBD5 Missense_Mutation p.D1132E 0.35 tolerated_low_confidence(0.95) unknown(0) TCGA-VQ-A94R-01 2 150071135 150071135 G A LYPD6B Missense_Mutation p.V179I 0.13 benign(0.086) TCGA-VQ-A94R-01 2 166246020 166246020 C T SCN2A Missense_Mutation p.R1902C 0.18 deleterious(0) probably_damaging(0.999) TCGA-VQ-A94R-01 2 166868764 166868764 C T SCN1A Missense_Mutation p.R1245Q 0.42 deleterious(0) benign(0.242) TCGA-VQ-A94R-01 2 173850196 173850196 G C RAPGEF4 Missense_Mutation p.E375D 0.05 deleterious(0) possibly_damaging(0.734) TCGA-VQ-A94R-01 2 175436899 175436899 G T WIPF1 Missense_Mutation p.Q212K 0.40 tolerated(0.3) benign(0.034) TCGA-VQ-A94R-01 2 175677103 175677103 C T CHN1 Missense_Mutation p.V274M 0.26 deleterious(0) benign(0.074) TCGA-VQ-A94R-01 2 179455884 179455884 T C TTN Missense_Mutation p.T20190A 0.33 TCGA-VQ-A94R-01 2 179457350 179457350 T C TTN Silent p.R19794R 0.40 TCGA-VQ-A94R-01 2 17961920 17961920 C G GEN1 Missense_Mutation p.P481A 0.11 tolerated(0.95) benign(0.001) TCGA-VQ-A94R-01 2 182543576 182543576 C T NEUROD1 Silent p.S4S 0.36 TCGA-VQ-A94R-01 2 189927607 189927607 C T COL5A2 Missense_Mutation p.G654D 0.29 probably_damaging(1) TCGA-VQ-A94R-01 2 191301783 191301783 G A MFSD6 Missense_Mutation p.G343D 0.11 deleterious(0) probably_damaging(0.999) TCGA-VQ-A94R-01 2 215840669 215840669 G A ABCA12 Missense_Mutation p.R1741C 0.20 deleterious(0) probably_damaging(1) TCGA-VQ-A94R-01 2 215845367 215845367 G A ABCA12 Missense_Mutation p.A1527V 0.28 deleterious(0.04) benign(0.199) TCGA-VQ-A94R-01 2 215855452 215855452 A C ABCA12 Missense_Mutation p.L1200V 0.41 deleterious(0.03) possibly_damaging(0.831) TCGA-VQ-A94R-01 2 27373006 27373006 G A TCF23 Missense_Mutation p.E80K 0.18 tolerated(0.12) benign(0.137) TCGA-VQ-A94R-01 2 30987099 30987099 T A CAPN13 Missense_Mutation p.I200F 0.39 deleterious(0.01) possibly_damaging(0.532) TCGA-VQ-A94R-01 2 44126652 44126660 AAGTATGCC - LRPPRC In_Frame_Del p.A1219_L1221del 0.25 TCGA-VQ-A94R-01 2 47613757 47613757 A G EPCAM 3'UTR 0.46 TCGA-VQ-A94R-01 2 48848395 48848395 G C STON1-GTF2A1L Silent p.P775P 0.25 TCGA-VQ-A94R-01 2 67630970 67630970 T G ETAA1 Missense_Mutation p.L386V 0.42 deleterious(0.01) possibly_damaging(0.906) TCGA-VQ-A94R-01 2 74274021 74274021 C T TET3 Missense_Mutation p.S191L 0.29 tolerated(0.4) benign(0.021) TCGA-VQ-A94R-01 3 100605120 100605120 A C ABI3BP Missense_Mutation p.I177S 0.38 deleterious(0) benign(0.227) TCGA-VQ-A94R-01 3 122423438 122423438 C T PARP14 Missense_Mutation p.A1128V 0.19 deleterious(0.01) possibly_damaging(0.632) TCGA-VQ-A94R-01 3 134322878 134322878 C T KY Missense_Mutation p.R510H 0.16 deleterious(0) probably_damaging(0.994) TCGA-VQ-A94R-01 3 134514473 134514473 G A EPHB1 5'UTR 0.24 TCGA-VQ-A94R-01 3 1445080 1445080 T G CNTN6 Missense_Mutation p.F1022C 0.18 deleterious(0.01) possibly_damaging(0.599) TCGA-VQ-A94R-01 3 148599358 148599358 G A CPA3 Missense_Mutation p.R209Q 0.20 tolerated(1) benign(0.019) TCGA-VQ-A94R-01 3 15115652 15115652 G A ZFYVE20 Silent p.F664F 0.18 TCGA-VQ-A94R-01 3 165547711 165547711 T C BCHE Missense_Mutation p.S371G 0.36 tolerated(0.05) benign(0.256) TCGA-VQ-A94R-01 3 186965061 186965061 C T MASP1 Intron 0.23 TCGA-VQ-A94R-01 3 35748540 35748540 G A ARPP21 Missense_Mutation p.R254Q 0.23 deleterious(0) probably_damaging(0.999) TCGA-VQ-A94R-01 3 38181984 38181984 A C MYD88 Missense_Mutation p.K203T 0.47 deleterious(0) probably_damaging(0.999) TCGA-VQ-A94R-01 3 38739384 38739384 C G SCN10A Missense_Mutation p.R1776T 0.21 deleterious(0) possibly_damaging(0.694) TCGA-VQ-A94R-01 3 38835383 38835383 T G SCN10A Missense_Mutation p.K40T 0.20 tolerated(0.08) benign(0.04) TCGA-VQ-A94R-01 3 48310029 48310029 G A ZNF589 Missense_Mutation p.R283Q 0.42 tolerated(0.17) benign(0.153) TCGA-VQ-A94R-01 3 55717854 55717854 G C ERC2 3'UTR 0.55 TCGA-VQ-A94R-01 4 103970157 103970157 G A SLC9B2 Silent p.G202G 0.21 TCGA-VQ-A94R-01 4 147561759 147561759 G A POU4F2 Silent p.A343A 0.10 TCGA-VQ-A94R-01 4 148552552 148552552 G T TMEM184C Missense_Mutation p.M225I 0.20 deleterious(0.05) benign(0.142) TCGA-VQ-A94R-01 4 151408909 151408909 T C LRBA Missense_Mutation p.T2187A 0.35 tolerated(0.14) probably_damaging(0.93) TCGA-VQ-A94R-01 4 156632319 156632319 G A GUCY1A3 Silent p.T334T 0.24 TCGA-VQ-A94R-01 4 189018279 189018279 A C TRIML2 Silent p.A177A 0.39 TCGA-VQ-A94R-01 4 20591360 20591360 A G SLIT2 Missense_Mutation p.K1061R 0.33 tolerated(1) benign(0.009) TCGA-VQ-A94R-01 4 46053445 46053445 G T GABRG1 Missense_Mutation p.A376D 0.27 tolerated(0.54) benign(0.171) TCGA-VQ-A94R-01 4 47605664 47605664 C G CORIN Missense_Mutation p.W854C 0.08 deleterious(0) probably_damaging(1) TCGA-VQ-A94R-01 4 54362556 54362556 G A LNX1 Silent p.N328N 0.60 TCGA-VQ-A94R-01 4 6331069 6331069 G A PPP2R2C Silent p.Y324Y 0.29 TCGA-VQ-A94R-01 4 6596387 6596387 T G MAN2B2 Missense_Mutation p.F329V 0.54 tolerated(0.08) probably_damaging(0.999) TCGA-VQ-A94R-01 4 6622981 6622981 G C MAN2B2 Missense_Mutation p.R1000P 0.32 deleterious(0) probably_damaging(0.99) TCGA-VQ-A94R-01 4 79321957 79321957 A G FRAS1 Missense_Mutation p.T1349A 0.19 benign(0.311) TCGA-VQ-A94R-01 4 83859647 83859647 G A LIN54 Missense_Mutation p.S484F 0.34 tolerated(0.19) benign(0.11) TCGA-VQ-A94R-01 4 88583770 88583770 C T DMP1 Silent p.S280S 0.43 TCGA-VQ-A94R-01 5 101748843 101748843 C T SLCO6A1 Missense_Mutation p.G493R 0.29 deleterious(0) probably_damaging(0.998) TCGA-VQ-A94R-01 5 1214117 1214119 TCT - SLC6A19 In_Frame_Del p.F277del 0.29 TCGA-VQ-A94R-01 5 137518962 137518962 C A KIF20A Missense_Mutation p.L313I 0.38 tolerated(0.64) benign(0.019) TCGA-VQ-A94R-01 5 138643312 138643312 C T MATR3 Missense_Mutation p.H70Y 0.37 tolerated_low_confidence(0.12) possibly_damaging(0.838) TCGA-VQ-A94R-01 5 140222537 140222537 C A PCDHA8 Missense_Mutation p.P544H 0.36 deleterious_low_confidence(0.02) benign(0.353) TCGA-VQ-A94R-01 5 140729974 140729974 C T PCDHGB1 Silent p.A49A 0.52 TCGA-VQ-A94R-01 5 140751336 140751336 G A PCDHGB3 Missense_Mutation p.V459M 0.05 deleterious(0.01) probably_damaging(0.981) TCGA-VQ-A94R-01 5 14461399 14461399 G A TRIO Silent p.P1825P 0.33 TCGA-VQ-A94R-01 5 150886740 150886740 C T FAT2 Silent p.K4164K 0.44 TCGA-VQ-A94R-01 5 152870352 152870352 G T GRIA1 5'Flank 0.33 TCGA-VQ-A94R-01 5 16479029 16479029 A - FAM134B Frame_Shift_Del p.K247Sfs*5 0.26 TCGA-VQ-A94R-01 5 168149944 168149944 G A SLIT3 Missense_Mutation p.S802F 0.21 deleterious(0.01) probably_damaging(0.942) TCGA-VQ-A94R-01 5 169697915 169697915 C T LCP2 Missense_Mutation p.D111N 0.38 deleterious(0) probably_damaging(0.998) TCGA-VQ-A94R-01 5 17354212 17354212 C T CTD-2139B15.2 Intron 0.30 TCGA-VQ-A94R-01 5 21842330 21842330 T C CDH12 Missense_Mutation p.T252A 0.27 deleterious(0.01) probably_damaging(0.929) TCGA-VQ-A94R-01 5 24487952 24487952 G - CDH10 Frame_Shift_Del p.Y730Tfs*19 0.28 TCGA-VQ-A94R-01 5 33577143 33577143 G T ADAMTS12 Nonsense_Mutation p.C996* 0.26 TCGA-VQ-A94R-01 5 38964996 38964996 T A RICTOR Splice_Site p.X434_splice 0.26 TCGA-VQ-A94R-01 5 63257036 63257036 G C HTR1A Missense_Mutation p.P171A 0.15 deleterious(0) probably_damaging(1) TCGA-VQ-A94R-01 5 72168507 72168507 G A TNPO1 Missense_Mutation p.R213K 0.28 tolerated(0.13) benign(0.003) TCGA-VQ-A94R-01 6 110746110 110746110 G A SLC22A16 Missense_Mutation p.A567V 0.08 tolerated(1) benign(0.001) TCGA-VQ-A94R-01 6 111631196 111631196 G A REV3L Missense_Mutation p.R2968C 0.49 deleterious(0) probably_damaging(0.971) TCGA-VQ-A94R-01 6 111696587 111696587 G T REV3L Missense_Mutation p.L991I 0.31 deleterious(0.01) probably_damaging(0.956) TCGA-VQ-A94R-01 6 117866753 117866753 T C DCBLD1 Silent p.D536D 0.33 TCGA-VQ-A94R-01 6 133044050 133044050 C T VNN3 3'Flank 0.09 TCGA-VQ-A94R-01 6 151161433 151161433 G A PLEKHG1 Missense_Mutation p.V1187I 0.23 tolerated(1) benign(0.001) TCGA-VQ-A94R-01 6 168479587 168479587 C T FRMD1 Missense_Mutation p.R63Q 0.34 tolerated(0.41) benign(0.017) TCGA-VQ-A94R-01 6 25779418 25779418 C A SLC17A4 3'UTR 0.25 TCGA-VQ-A94R-01 6 27114998 27114998 G A HIST1H2AH Missense_Mutation p.V31M 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.862) TCGA-VQ-A94R-01 6 27799296 27799296 G A HIST1H4K Missense_Mutation p.R4C 0.42 tolerated_low_confidence(0.06) benign(0.012) TCGA-VQ-A94R-01 6 33152074 33152075 - G COL11A2 Intron 0.44 TCGA-VQ-A94R-01 6 33410974 33410974 G C SYNGAP1 Missense_Mutation p.G882A 0.08 tolerated(0.18) possibly_damaging(0.572) TCGA-VQ-A94R-01 6 36274119 36274119 C T PNPLA1 Missense_Mutation p.H479Y 0.28 deleterious_low_confidence(0.04) benign(0.087) TCGA-VQ-A94R-01 6 43025914 43025914 G C MRPL2 Missense_Mutation p.P52A 0.15 tolerated_low_confidence(0.31) benign(0.02) TCGA-VQ-A94R-01 6 47682678 47682678 C T GPR115 Missense_Mutation p.A566V 0.36 deleterious(0.01) possibly_damaging(0.504) TCGA-VQ-A94R-01 6 72889429 72889429 A T RIMS1 Missense_Mutation p.K208M 0.07 deleterious(0) probably_damaging(0.998) TCGA-VQ-A94R-01 6 85473784 85473784 C T TBX18 Missense_Mutation p.R39Q 0.60 tolerated(0.31) possibly_damaging(0.602) TCGA-VQ-A94R-01 6 88210933 88210933 C T SLC35A1 Missense_Mutation p.R138W 0.17 deleterious(0) probably_damaging(0.999) TCGA-VQ-A94R-01 6 88221136 88221136 T C SLC35A1 Silent p.G302G 0.12 TCGA-VQ-A94R-01 6 90605299 90605299 C A GJA10 Missense_Mutation p.T371K 0.09 tolerated(0.39) benign(0.004) TCGA-VQ-A94R-01 6 97423964 97423964 G T KLHL32 Missense_Mutation p.G39C 0.10 deleterious(0) probably_damaging(1) TCGA-VQ-A94R-01 6 99739596 99739596 G T FAXC Silent p.P308P 0.31 TCGA-VQ-A94R-01 7 100162578 100162578 C T AGFG2 Silent p.F470F 0.39 TCGA-VQ-A94R-01 7 100675280 100675280 A C MUC17 Missense_Mutation p.S195R 0.45 possibly_damaging(0.534) TCGA-VQ-A94R-01 7 107399652 107399652 G A CBLL1 3'UTR 0.15 TCGA-VQ-A94R-01 7 119914784 119914784 A G KCND2 Missense_Mutation p.Q33R 0.18 tolerated(0.46) benign(0) TCGA-VQ-A94R-01 7 127031598 127031598 T C ZNF800 Missense_Mutation p.D5G 0.28 deleterious(0.01) probably_damaging(0.933) TCGA-VQ-A94R-01 7 128493076 128493076 C G FLNC Missense_Mutation p.R2067G 0.34 deleterious(0) probably_damaging(0.991) TCGA-VQ-A94R-01 7 135262639 135262639 C T NUP205 Silent p.L248L 0.62 TCGA-VQ-A94R-01 7 142574208 142574208 G A TRPV6 Nonsense_Mutation p.Q239* 0.82 TCGA-VQ-A94R-01 7 150325386 150325386 C A GIMAP6 Silent p.L100L 0.67 TCGA-VQ-A94R-01 7 31146138 31146138 G A ADCYAP1R1 Missense_Mutation p.R444Q 0.08 deleterious(0.04) possibly_damaging(0.49) TCGA-VQ-A94R-01 7 37955847 37955847 T G SFRP4 Missense_Mutation p.K98T 0.38 deleterious(0) possibly_damaging(0.752) TCGA-VQ-A94R-01 7 37960546 37960546 C A EPDR1 Missense_Mutation p.P2Q 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.829) TCGA-VQ-A94R-01 7 38268434 38268434 G A STARD3NL Silent p.E228E 0.16 TCGA-VQ-A94R-01 7 41739752 41739752 A G INHBA Missense_Mutation p.V74A 0.23 deleterious(0) benign(0.056) TCGA-VQ-A94R-01 7 57188058 57188058 C T ZNF479 Missense_Mutation p.C355Y 0.17 deleterious(0) probably_damaging(1) TCGA-VQ-A94R-01 7 63796666 63796666 A G ZNF736 Silent p.V11V 0.17 TCGA-VQ-A94R-01 7 64864588 64864588 T C ZNF92 Missense_Mutation p.S521P 0.34 tolerated(0.07) possibly_damaging(0.869) TCGA-VQ-A94R-01 7 82583504 82583504 A G PCLO Silent p.G2255G 0.22 TCGA-VQ-A94R-01 7 86415574 86415574 T C GRM3 Intron 0.31 TCGA-VQ-A94R-01 7 87005145 87005145 C G CROT Missense_Mutation p.A279G 0.19 deleterious(0.01) possibly_damaging(0.597) TCGA-VQ-A94R-01 7 91707127 91707127 G A AKAP9 Missense_Mutation p.D2295N 0.10 benign(0.014) TCGA-VQ-A94R-01 8 105263935 105263935 T A RIMS2 Missense_Mutation p.F1313I 0.24 deleterious_low_confidence(0) benign(0.423) TCGA-VQ-A94R-01 8 109796394 109796394 A G TMEM74 3'UTR 0.16 TCGA-VQ-A94R-01 8 110424547 110424547 T C PKHD1L1 Silent p.R713R 0.25 TCGA-VQ-A94R-01 8 113240999 113240999 A G CSMD3 Silent p.Y3650Y 0.54 TCGA-VQ-A94R-01 8 11400759 11400759 C T BLK Missense_Mutation p.P9L 0.51 tolerated(0.55) possibly_damaging(0.726) TCGA-VQ-A94R-01 8 114111005 114111005 A C CSMD3 Silent p.G299G 0.38 TCGA-VQ-A94R-01 8 125989969 125989969 C T ZNF572 Missense_Mutation p.R487W 0.30 deleterious(0) possibly_damaging(0.87) TCGA-VQ-A94R-01 8 133492795 133492795 C T KCNQ3 5'UTR 0.38 TCGA-VQ-A94R-01 8 139160833 139160833 G A FAM135B Silent p.F1126F 0.34 TCGA-VQ-A94R-01 8 143996283 143996283 C T CYP11B2 Missense_Mutation p.G213S 0.40 tolerated(0.36) possibly_damaging(0.491) TCGA-VQ-A94R-01 8 144945186 144945186 G A EPPK1 Missense_Mutation p.R746C 0.45 benign(0.024) TCGA-VQ-A94R-01 8 1616568 1616568 G A DLGAP2 Silent p.S548S 0.30 TCGA-VQ-A94R-01 8 2824253 2824253 T G CSMD1 Missense_Mutation p.N2980T 0.27 probably_damaging(0.966) TCGA-VQ-A94R-01 8 28974420 28974420 G C KIF13B Silent p.V1255V 0.21 TCGA-VQ-A94R-01 8 30704773 30704773 G A TEX15 Silent p.P587P 0.19 TCGA-VQ-A94R-01 8 38103788 38103788 A G DDHD2 Silent p.K365K 0.13 TCGA-VQ-A94R-01 8 42611567 42611567 C T CHRNA6 Missense_Mutation p.V259M 0.41 deleterious(0.02) possibly_damaging(0.898) TCGA-VQ-A94R-01 8 48973334 48973334 C T UBE2V2 Silent p.S128S 0.18 TCGA-VQ-A94R-01 8 69728170 69728170 G A C8orf34 Silent p.L533L 0.09 TCGA-VQ-A94R-01 8 73480110 73480110 A C KCNB2 Missense_Mutation p.E47D 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A94R-01 8 87878722 87878722 A C CNBD1 5'UTR 0.30 TCGA-VQ-A94R-01 8 89053747 89053747 C T MMP16 Missense_Mutation p.R589K 0.24 tolerated(0.18) benign(0.149) TCGA-VQ-A94R-01 9 107515233 107515233 T C NIPSNAP3A Silent p.D106D 0.26 TCGA-VQ-A94R-01 9 115806182 115806182 G T ZFP37 Missense_Mutation p.S239Y 0.65 tolerated(0.62) benign(0.235) TCGA-VQ-A94R-01 9 116052820 116052820 G A PRPF4 Missense_Mutation p.G367D 0.17 tolerated(0.08) possibly_damaging(0.521) TCGA-VQ-A94R-01 9 124535200 124535200 C G DAB2IP Missense_Mutation p.A770G 0.36 tolerated(0.35) benign(0.295) TCGA-VQ-A94R-01 9 32631934 32631934 C T TAF1L Missense_Mutation p.R1215H 0.63 tolerated(0.08) benign(0.002) TCGA-VQ-A94R-01 9 38396304 38396304 T G ALDH1B1 Missense_Mutation p.F187V 0.67 deleterious(0.02) probably_damaging(0.997) TCGA-VQ-A94R-01 9 79323980 79323980 G A PRUNE2 Silent p.D1070D 0.67 TCGA-VQ-A94R-01 9 79820242 79820242 T G VPS13A Silent p.L67L 0.08 TCGA-VQ-A94R-01 9 88648302 88648302 G A GOLM1 Nonsense_Mutation p.Q342* 0.62 TCGA-VQ-A94R-01 9 90535180 90535180 C T SPATA31C1 RNA 0.48 TCGA-VQ-A94R-01 X 129149555 129149555 C T BCORL1 Missense_Mutation p.S936F 0.78 possibly_damaging(0.898) TCGA-VQ-A94R-01 X 132091128 132091128 C T HS6ST2 Missense_Mutation p.V219I 0.71 tolerated_low_confidence(0.07) benign(0.326) TCGA-VQ-A94R-01 X 134494201 134494201 G C ZNF449 Missense_Mutation p.E253Q 0.63 tolerated(0.31) benign(0.287) TCGA-VQ-A94R-01 X 140995028 140995028 A C MAGEC1 Missense_Mutation p.Q613P 0.64 deleterious_low_confidence(0.01) benign(0.153) TCGA-VQ-A94R-01 X 152807362 152807362 G C ATP2B3 Silent p.G214G 0.57 TCGA-VQ-A94R-01 X 153628167 153628167 G A RPL10 Missense_Mutation p.A72T 0.55 deleterious(0.05) possibly_damaging(0.468) TCGA-VQ-A94R-01 X 30254026 30254026 C T MAGEB3 5'UTR 0.57 TCGA-VQ-A94R-01 X 47774945 47774945 A C ZNF81 Missense_Mutation p.K300N 0.70 tolerated(0.28) probably_damaging(0.995) TCGA-VQ-A94R-01 X 48046289 48046289 G A SSX5 3'UTR 0.57 TCGA-VQ-A94R-01 X 71350804 71350812 GTGAAAAAG - RGAG4 In_Frame_Del p.F194_T196del 0.10 TCGA-VQ-A94R-01 X 77224372 77224372 C T PGAM4 Silent p.%3D 0.55 TCGA-VQ-A94R-01 X 79932082 79932082 T C BRWD3 3'UTR 0.35 TCGA-VQ-A94R-01 X 84510496 84510496 T A ZNF711 Nonsense_Mutation p.L104* 0.06 TCGA-VQ-A94T-01 10 105659870 105659870 C T OBFC1 Missense_Mutation p.G136D 0.33 deleterious(0) probably_damaging(0.999) TCGA-VQ-A94T-01 10 111640682 111640682 C T XPNPEP1 Missense_Mutation p.R350H 0.23 tolerated(0.05) possibly_damaging(0.817) TCGA-VQ-A94T-01 10 13217565 13217565 G T MCM10 Silent p.T217T 0.78 TCGA-VQ-A94T-01 10 17195515 17195515 G A TRDMT1 Missense_Mutation p.P356S 0.30 tolerated(0.22) benign(0.011) TCGA-VQ-A94T-01 10 38407784 38407784 C T ZNF37A 3'UTR 0.35 TCGA-VQ-A94T-01 10 50121980 50121980 T C LRRC18 Missense_Mutation p.N74S 0.74 tolerated(0.5) benign(0.047) TCGA-VQ-A94T-01 10 72637131 72637131 C A SGPL1 3'UTR 0.25 TCGA-VQ-A94T-01 11 1009100 1009100 G A AP2A2 Silent p.R807R 0.32 TCGA-VQ-A94T-01 11 1016374 1016377 AAGA - MUC6 Frame_Shift_Del p.S2142Lfs*33 0.52 TCGA-VQ-A94T-01 11 107197558 107197558 G A CWF19L2 3'UTR 1.00 TCGA-VQ-A94T-01 11 46321549 46321549 A G CREB3L1 Missense_Mutation p.S56G 0.17 tolerated(1) benign(0.254) TCGA-VQ-A94T-01 11 48166372 48166372 C T PTPRJ Silent p.D907D 0.25 TCGA-VQ-A94T-01 11 55322504 55322504 C A OR4C15 Missense_Mutation p.A241D 0.33 deleterious_low_confidence(0) possibly_damaging(0.837) TCGA-VQ-A94T-01 11 62491803 62491803 G A HNRNPUL2 Nonsense_Mutation p.R212* 0.20 TCGA-VQ-A94T-01 11 6290930 6290930 C T CCKBR Silent p.Y61Y 0.29 TCGA-VQ-A94T-01 11 6458345 6458345 G A HPX Missense_Mutation p.R256C 0.45 deleterious(0) possibly_damaging(0.902) TCGA-VQ-A94T-01 11 65123435 65123435 G A TIGD3 Silent p.K52K 0.23 TCGA-VQ-A94T-01 11 67234709 67234730 GGCAGAGCCTGTACAAAAGGAG - TMEM134 Intron 0.25 TCGA-VQ-A94T-01 11 75429008 75429010 CTC - MOGAT2 In_Frame_Del p.S26del 0.29 TCGA-VQ-A94T-01 11 7690517 7690517 T C CYB5R2 Missense_Mutation p.T103A 0.47 deleterious(0) possibly_damaging(0.644) TCGA-VQ-A94T-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.29 deleterious(0) possibly_damaging(0.479) TCGA-VQ-A94T-01 12 54739262 54739262 C A COPZ1 Missense_Mutation p.L94M 0.06 deleterious(0) probably_damaging(0.996) TCGA-VQ-A94T-01 12 58203433 58203433 T C AVIL Missense_Mutation p.K296E 0.15 deleterious(0) probably_damaging(0.999) TCGA-VQ-A94T-01 12 968440 968440 C T WNK1 Missense_Mutation p.A477V 0.20 deleterious(0.01) unknown(0) TCGA-VQ-A94T-01 13 22255231 22255231 G A FGF9 Missense_Mutation p.V110M 0.40 deleterious(0) probably_damaging(0.987) TCGA-VQ-A94T-01 13 31903755 31903755 G A B3GALTL Missense_Mutation p.E483K 0.18 tolerated(0.2) benign(0.002) TCGA-VQ-A94T-01 13 49852631 49852631 C T CDADC1 Missense_Mutation p.A399V 0.50 deleterious(0) probably_damaging(0.939) TCGA-VQ-A94T-01 13 99907713 99907713 G A GPR18 Silent p.A138A 0.12 TCGA-VQ-A94T-01 14 31354625 31354625 G T COCH Missense_Mutation p.Q253H 0.20 deleterious(0) probably_damaging(0.949) TCGA-VQ-A94T-01 15 22473098 22473098 C T IGHV4OR15-8 Missense_Mutation p.R58H 0.18 deleterious(0.02) probably_damaging(0.981) TCGA-VQ-A94T-01 15 23261866 23261866 C A GOLGA8I Silent p.V326V 0.14 TCGA-VQ-A94T-01 15 79760594 79760594 C T KIAA1024 Silent p.Y873Y 0.21 TCGA-VQ-A94T-01 15 86311422 86311422 G A KLHL25 Silent p.L540L 0.16 TCGA-VQ-A94T-01 16 2506773 2506773 G A CCNF Missense_Mutation p.V705I 0.53 tolerated_low_confidence(0.2) benign(0.007) TCGA-VQ-A94T-01 16 70863531 70863531 C T HYDIN Missense_Mutation p.R4701H 0.29 probably_damaging(0.923) TCGA-VQ-A94T-01 17 43226499 43226499 T C HEXIM1 5'UTR 0.30 TCGA-VQ-A94T-01 17 79662908 79662908 G A HGS Silent p.K424K 0.33 TCGA-VQ-A94T-01 18 34298572 34298572 G A FHOD3 Missense_Mutation p.R929Q 0.29 tolerated(0.11) benign(0.006) TCGA-VQ-A94T-01 18 63527038 63527038 A G CDH7 Missense_Mutation p.N530S 0.41 tolerated(0.14) possibly_damaging(0.598) TCGA-VQ-A94T-01 19 23927148 23927148 C A ZNF681 Missense_Mutation p.A402S 0.13 tolerated(0.06) probably_damaging(0.918) TCGA-VQ-A94T-01 19 31770543 31770543 G A TSHZ3 Silent p.L52L 0.78 TCGA-VQ-A94T-01 19 44417495 44417495 T A ZNF45 3'UTR 0.25 TCGA-VQ-A94T-01 19 50128134 50128134 G T PRR12 Nonsense_Mutation p.E1919* 0.15 TCGA-VQ-A94T-01 19 51140676 51140676 G A SYT3 5'UTR 0.28 TCGA-VQ-A94T-01 19 56954101 56954101 G T ZNF667 Missense_Mutation p.S88Y 0.14 tolerated(0.07) benign(0.276) TCGA-VQ-A94T-01 19 9361867 9361867 C T OR7E24 Silent p.L50L 0.75 TCGA-VQ-A94T-01 1 114680217 114680217 C T SYT6 Missense_Mutation p.R239H 0.47 deleterious(0.05) probably_damaging(0.973) TCGA-VQ-A94T-01 1 19524517 19524517 T A UBR4 Silent p.S225S 0.10 TCGA-VQ-A94T-01 1 32573735 32573735 G C KPNA6 Missense_Mutation p.E2Q 0.23 tolerated(0.07) benign(0.174) TCGA-VQ-A94T-01 1 33236678 33236679 TA - KIAA1522 Frame_Shift_Del p.C634Ffs*5 0.39 TCGA-VQ-A94T-01 1 65147712 65147712 C T CACHD1 Missense_Mutation p.A1119V 0.38 deleterious(0.04) benign(0.168) TCGA-VQ-A94T-01 22 36684790 36684790 T G MYH9 Missense_Mutation p.K1585Q 0.67 possibly_damaging(0.861) TCGA-VQ-A94T-01 2 145162476 145162476 G A ZEB2 Silent p.A173A 0.29 TCGA-VQ-A94T-01 2 179416648 179416648 G T TTN Missense_Mutation p.P30327T 0.55 TCGA-VQ-A94T-01 2 210560819 210560819 G A MAP2 Missense_Mutation p.V1309M 0.19 deleterious(0) probably_damaging(1) TCGA-VQ-A94T-01 2 223423347 223423347 T G SGPP2 Missense_Mutation p.I310M 0.33 tolerated(0.14) benign(0.219) TCGA-VQ-A94T-01 2 233350722 233350722 G A ECEL1 Silent p.G214G 0.33 TCGA-VQ-A94T-01 2 85924683 85924683 C T GNLY Missense_Mutation p.R104C 0.27 deleterious(0) probably_damaging(0.996) TCGA-VQ-A94T-01 3 113956025 113956025 T C ZNF80 5'UTR 0.38 TCGA-VQ-A94T-01 3 121097589 121097589 C T STXBP5L Missense_Mutation p.P759S 0.27 tolerated(0.15) possibly_damaging(0.517) TCGA-VQ-A94T-01 3 124438079 124438079 G A RP11-71H17.7 5'Flank 0.59 TCGA-VQ-A94T-01 3 124839484 124839484 G A SLC12A8 Silent p.A261A 0.25 TCGA-VQ-A94T-01 3 171427373 171427373 G A PLD1 Silent p.I346I 0.29 TCGA-VQ-A94T-01 3 33038608 33038608 T G GLB1 Missense_Mutation p.K655Q 0.13 tolerated(0.27) benign(0.008) TCGA-VQ-A94T-01 3 44613004 44613004 G T ZKSCAN7 3'UTR 0.21 TCGA-VQ-A94T-01 3 51370661 51370661 C T DOCK3 Silent p.L1196L 0.29 TCGA-VQ-A94T-01 3 54952554 54952554 G T LRTM1 Missense_Mutation p.P324T 0.26 tolerated(0.58) benign(0.036) TCGA-VQ-A94T-01 3 72897346 72897346 C T SHQ1 Intron 0.20 TCGA-VQ-A94T-01 4 119163305 119163305 G T NDST3 Splice_Site p.X800_splice 0.22 TCGA-VQ-A94T-01 4 126397344 126397344 G A FAT4 Missense_Mutation p.D4076N 0.41 probably_damaging(0.955) TCGA-VQ-A94T-01 4 177052815 177052815 G A WDR17 Missense_Mutation p.V366M 0.33 deleterious(0) possibly_damaging(0.707) TCGA-VQ-A94T-01 4 86916560 86916560 G T ARHGAP24 Missense_Mutation p.G585W 0.40 tolerated(0.06) possibly_damaging(0.653) TCGA-VQ-A94T-01 5 102309945 102309945 G T PAM Missense_Mutation p.V430F 0.13 tolerated(0.08) probably_damaging(0.991) TCGA-VQ-A94T-01 5 121188337 121188337 G A FTMT Missense_Mutation p.E227K 0.17 deleterious(0.01) possibly_damaging(0.789) TCGA-VQ-A94T-01 5 141511421 141511421 G T NDFIP1 Missense_Mutation p.A38S 0.40 tolerated(0.72) benign(0.043) TCGA-VQ-A94T-01 5 149748319 149748319 C T TCOF1 Missense_Mutation p.P140L 0.53 tolerated(0.09) benign(0.076) TCGA-VQ-A94T-01 5 159640782 159640782 C T FABP6 Missense_Mutation p.R31W 0.30 deleterious_low_confidence(0) benign(0.245) TCGA-VQ-A94T-01 5 169623 169623 C T PLEKHG4B Silent p.H859H 0.30 TCGA-VQ-A94T-01 5 205697 205697 G T CCDC127 Silent p.L166L 0.23 TCGA-VQ-A94T-01 5 35084585 35084585 G A PRLR Silent p.D120D 0.41 TCGA-VQ-A94T-01 5 80149948 80149948 G A MSH3 Splice_Site p.X938_splice 0.07 TCGA-VQ-A94T-01 6 107076789 107076789 G T RTN4IP1 Silent p.T36T 0.21 TCGA-VQ-A94T-01 6 117609650 117609650 C T ROS1 3'UTR 0.12 TCGA-VQ-A94T-01 6 136599142 136599142 G T BCLAF1 Missense_Mutation p.H293N 0.12 tolerated(0.22) benign(0.216) TCGA-VQ-A94T-01 6 154360838 154360838 C T OPRM1 Silent p.G146G 0.23 TCGA-VQ-A94T-01 6 35748851 35748851 C T CLPSL1 5'UTR 0.27 TCGA-VQ-A94T-01 6 40996259 40996259 C T UNC5CL Silent p.E470E 0.28 TCGA-VQ-A94T-01 6 53989365 53989365 T C MLIP Missense_Mutation p.I105T 0.13 tolerated(0.64) benign(0.001) TCGA-VQ-A94T-01 6 70385988 70385988 T A LMBRD1 3'UTR 0.27 TCGA-VQ-A94T-01 6 87993987 87993987 A T GJB7 Nonsense_Mutation p.L215* 0.25 TCGA-VQ-A94T-01 7 119915481 119915481 C T KCND2 Silent p.I265I 0.25 TCGA-VQ-A94T-01 7 2984021 2984021 C T CARD11 Missense_Mutation p.R170H 0.38 tolerated(0.13) benign(0.232) TCGA-VQ-A94T-01 7 36713561 36713561 C A AOAH Missense_Mutation p.D93Y 0.32 tolerated(0.15) probably_damaging(0.949) TCGA-VQ-A94T-01 8 54745597 54745597 T C ATP6V1H Missense_Mutation p.M55V 0.19 tolerated(0.37) benign(0.001) TCGA-VQ-A94T-01 9 107288928 107288928 G A OR13C4 Missense_Mutation p.A188V 0.14 tolerated(0.1) probably_damaging(1) TCGA-VQ-A94T-01 9 123900945 123900945 T C CNTRL Silent p.L775L 0.39 TCGA-VQ-A94T-01 9 130272485 130272503 CTTGAAGAAGACATCTCGC TTTG FAM129B In_Frame_Del p.R362_F366del 0.17 TCGA-VQ-A94T-01 9 139091542 139091542 C T LHX3 Missense_Mutation p.E151K 0.19 deleterious(0) probably_damaging(0.924) TCGA-VQ-A94T-01 X 100349861 100349861 T C TMEM35 Silent p.S140S 0.34 TCGA-VQ-A94T-01 X 101909790 101909790 T G GPRASP1 Missense_Mutation p.F317V 0.83 tolerated(0.48) benign(0.024) TCGA-VQ-A94T-01 X 109764857 109764857 C A TDGF1P3 RNA 0.44 TCGA-VQ-A94T-01 X 153880703 153880703 C T CTAG2 Missense_Mutation p.A158T 0.35 deleterious_low_confidence(0) unknown(0) TCGA-VQ-A94T-01 X 49021421 49021421 G A MAGIX Missense_Mutation p.R167H 0.30 tolerated(0.21) benign(0.103) TCGA-VQ-A94T-01 X 70080718 70080718 G A TEX11 Nonsense_Mutation p.R120* 0.50 TCGA-VQ-A94T-01 X 77243898 77243898 C T ATP7A Missense_Mutation p.A94V 0.33 tolerated(0.26) benign(0.094) TCGA-VQ-A94U-01 10 105037247 105037247 C T INA Silent p.N93N 0.16 TCGA-VQ-A94U-01 10 115348763 115348763 C T NRAP Missense_Mutation p.V1722I 0.17 tolerated_low_confidence(0.13) benign(0.006) TCGA-VQ-A94U-01 10 118306813 118306813 A C PNLIP Missense_Mutation p.E18D 0.13 deleterious(0.02) benign(0.03) TCGA-VQ-A94U-01 10 134013907 134013907 G A DPYSL4 Missense_Mutation p.G287S 0.32 deleterious(0.02) probably_damaging(0.999) TCGA-VQ-A94U-01 10 20568697 20568697 A G PLXDC2 Silent p.E513E 0.19 TCGA-VQ-A94U-01 10 21435374 21435374 T G C10orf113 Missense_Mutation p.I22L 0.09 deleterious_low_confidence(0.03) benign(0.274) TCGA-VQ-A94U-01 10 28032198 28032198 C T MKX Silent p.P49P 0.14 TCGA-VQ-A94U-01 10 38647419 38647419 G A HSD17B7P2 RNA 0.13 TCGA-VQ-A94U-01 10 46968704 46968704 C T SYT15 Missense_Mutation p.V78M 0.18 tolerated(0.09) benign(0.086) TCGA-VQ-A94U-01 10 50944412 50944412 G A OGDHL Silent p.R915R 0.24 TCGA-VQ-A94U-01 10 72358710 72358710 T G PRF1 Missense_Mutation p.D256A 0.18 deleterious(0.01) benign(0.288) TCGA-VQ-A94U-01 10 75072379 75072379 A T TTC18 Missense_Mutation p.F382Y 0.20 deleterious(0.04) benign(0.445) TCGA-VQ-A94U-01 10 81319083 81319083 C G SFTPA2 Missense_Mutation p.D53H 0.19 deleterious(0.01) probably_damaging(0.993) TCGA-VQ-A94U-01 11 103907638 103907638 T C DDI1 Missense_Mutation p.F30L 0.23 tolerated(0.33) benign(0.059) TCGA-VQ-A94U-01 11 108032615 108032615 G A NPAT Silent p.F1066F 0.24 TCGA-VQ-A94U-01 11 110450073 110450073 G T ARHGAP20 3'UTR 0.15 TCGA-VQ-A94U-01 11 123894222 123894222 G T OR10G9 Missense_Mutation p.C168F 0.21 deleterious(0) possibly_damaging(0.901) TCGA-VQ-A94U-01 11 124252431 124252431 C T OR8B2 Missense_Mutation p.G270E 0.27 tolerated_low_confidence(0.08) benign(0.132) TCGA-VQ-A94U-01 11 1270407 1270407 G A MUC5B Silent p.T4099T 0.31 TCGA-VQ-A94U-01 11 2154085 2154085 G A IGF2 3'UTR 0.29 TCGA-VQ-A94U-01 11 48266895 48266895 A C OR4X2 Missense_Mutation p.E80D 0.19 tolerated(0.11) benign(0.02) TCGA-VQ-A94U-01 11 5255363 5255363 T G HBD Missense_Mutation p.N58T 0.28 deleterious(0) probably_damaging(1) TCGA-VQ-A94U-01 11 5510654 5510654 G T OR52D1 Missense_Mutation p.A240S 0.29 tolerated(0.08) possibly_damaging(0.771) TCGA-VQ-A94U-01 11 55594726 55594726 A G OR5L2 Missense_Mutation p.E11G 0.24 deleterious(0.02) benign(0.01) TCGA-VQ-A94U-01 11 56949360 56949360 G T LRRC55 5'UTR 0.31 TCGA-VQ-A94U-01 11 63398935 63398935 C T ATL3 Silent p.G372G 0.20 TCGA-VQ-A94U-01 11 75479999 75479999 C T DGAT2 5'UTR 0.35 TCGA-VQ-A94U-01 12 10954555 10954555 G A TAS2R7 Silent p.I205I 0.19 TCGA-VQ-A94U-01 12 109678926 109678926 G C ACACB Missense_Mutation p.R1621P 0.24 deleterious(0) probably_damaging(1) TCGA-VQ-A94U-01 12 124798913 124798913 C T FAM101A Missense_Mutation p.R84C 0.24 tolerated(0.07) benign(0.006) TCGA-VQ-A94U-01 12 27081681 27081681 C T ASUN Missense_Mutation p.R153H 0.15 deleterious(0.01) benign(0.046) TCGA-VQ-A94U-01 12 40629494 40629494 C T LRRK2 Silent p.T138T 0.23 TCGA-VQ-A94U-01 12 40668657 40668657 A C LRRK2 Missense_Mutation p.E601D 0.21 tolerated(0.18) benign(0.049) TCGA-VQ-A94U-01 12 44913796 44913796 G - NELL2 Frame_Shift_Del p.Q848Sfs*30 0.22 TCGA-VQ-A94U-01 12 54797509 54797509 C T ITGA5 Missense_Mutation p.R559Q 0.17 deleterious(0) probably_damaging(0.999) TCGA-VQ-A94U-01 12 62148743 62148743 T G FAM19A2 Missense_Mutation p.K57Q 0.20 deleterious(0.03) benign(0.14) TCGA-VQ-A94U-01 12 78513286 78513286 G A NAV3 Missense_Mutation p.G1104R 0.21 deleterious(0.04) probably_damaging(0.931) TCGA-VQ-A94U-01 12 91348057 91348057 G A CCER1 Missense_Mutation p.R155C 0.29 deleterious(0) probably_damaging(0.942) TCGA-VQ-A94U-01 12 94654490 94654490 G A PLXNC1 Silent p.V1108V 0.21 TCGA-VQ-A94U-01 13 41642771 41642771 A C WBP4 Missense_Mutation p.K113Q 0.22 tolerated(0.12) benign(0.097) TCGA-VQ-A94U-01 13 58298871 58298871 G T PCDH17 Missense_Mutation p.V975L 0.24 deleterious(0.02) benign(0.097) TCGA-VQ-A94U-01 14 81302651 81302651 C A CEP128 Missense_Mutation p.A319S 0.30 deleterious(0.01) benign(0.407) TCGA-VQ-A94U-01 15 29346630 29346630 A G APBA2 Silent p.E181E 0.24 TCGA-VQ-A94U-01 16 20043437 20043437 C T GPR139 Missense_Mutation p.A228T 0.30 deleterious(0.03) probably_damaging(0.997) TCGA-VQ-A94U-01 16 20548663 20548663 G C ACSM2B Missense_Mutation p.P551A 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A94U-01 16 28118969 28118969 C T XPO6 Missense_Mutation p.V791I 0.21 tolerated(0.83) benign(0.002) TCGA-VQ-A94U-01 16 31393213 31393213 G T ITGAX Silent p.P1159P 0.19 TCGA-VQ-A94U-01 16 70926271 70926271 C T HYDIN Missense_Mutation p.R3137H 0.20 benign(0) TCGA-VQ-A94U-01 16 7382926 7382926 A C RBFOX1 5'UTR 0.23 TCGA-VQ-A94U-01 17 10544456 10544456 C T MYH3 Missense_Mutation p.R704H 0.38 deleterious(0) probably_damaging(0.991) TCGA-VQ-A94U-01 17 27229954 27229954 C T DHRS13 Silent p.A3A 0.55 TCGA-VQ-A94U-01 17 32690177 32690177 G T CCL1 Missense_Mutation p.Q2K 0.17 tolerated(1) benign(0.002) TCGA-VQ-A94U-01 17 4798379 4798379 G A MINK1 Missense_Mutation p.G976D 0.26 deleterious(0.01) benign(0.115) TCGA-VQ-A94U-01 17 7578224 7578224 T A TP53 Nonsense_Mutation p.R209* 0.63 TCGA-VQ-A94U-01 17 9596464 9596464 C T USP43 Silent p.S458S 0.32 TCGA-VQ-A94U-01 18 55365039 55365040 - T ATP8B1 Frame_Shift_Ins p.N205Kfs*2 0.57 TCGA-VQ-A94U-01 18 65178630 65178630 G C DSEL Missense_Mutation p.N1082K 0.33 tolerated(0.91) benign(0.002) TCGA-VQ-A94U-01 18 77802192 77802192 A T RBFA Missense_Mutation p.Q183H 0.07 deleterious(0) possibly_damaging(0.893) TCGA-VQ-A94U-01 19 10475613 10475613 C T TYK2 Missense_Mutation p.A375T 0.27 tolerated(1) benign(0.001) TCGA-VQ-A94U-01 19 13049450 13049450 G A CALR 5'UTR 0.38 TCGA-VQ-A94U-01 19 14104427 14104427 C T RFX1 Missense_Mutation p.E77K 0.31 deleterious_low_confidence(0.01) benign(0.197) TCGA-VQ-A94U-01 19 17384826 17384826 C T BABAM1 Missense_Mutation p.T153M 0.23 deleterious(0.04) benign(0.021) TCGA-VQ-A94U-01 19 37677443 37677443 C T ZNF585B Silent p.G332G 0.17 TCGA-VQ-A94U-01 19 43376167 43376167 C T PSG1 Missense_Mutation p.S154N 0.20 tolerated(0.81) probably_damaging(0.986) TCGA-VQ-A94U-01 19 44223763 44223763 C T IRGC Silent p.S351S 0.20 TCGA-VQ-A94U-01 19 46180989 46180989 C G GIPR Silent p.V292V 0.19 TCGA-VQ-A94U-01 19 50029285 50029285 G A FCGRT Missense_Mutation p.R336H 0.16 deleterious(0.03) benign(0.026) TCGA-VQ-A94U-01 19 50170339 50170339 C T BCL2L12 Silent p.S141S 0.36 TCGA-VQ-A94U-01 19 52448344 52448344 A G ZNF613 Missense_Mutation p.N403S 0.62 tolerated(1) benign(0.006) TCGA-VQ-A94U-01 19 53207805 53207805 G A ZNF611 3'UTR 0.24 TCGA-VQ-A94U-01 1 10713811 10713811 G A CASZ1 Missense_Mutation p.P768L 0.13 deleterious_low_confidence(0) possibly_damaging(0.511) TCGA-VQ-A94U-01 1 111440441 111440441 C T CD53 Missense_Mutation p.A172V 0.47 tolerated(0.1) benign(0.002) TCGA-VQ-A94U-01 1 120165556 120165556 G A ZNF697 Silent p.C470C 0.18 TCGA-VQ-A94U-01 1 12371899 12371899 T C VPS13D Silent p.C2284C 0.10 TCGA-VQ-A94U-01 1 152278782 152278782 T G FLG Missense_Mutation p.E2860D 0.10 benign(0.286) TCGA-VQ-A94U-01 1 152283719 152283719 T G FLG Missense_Mutation p.S1215R 0.19 benign(0.307) TCGA-VQ-A94U-01 1 152648619 152648619 C T LCE2C Missense_Mutation p.A43V 0.30 tolerated_low_confidence(0.08) unknown(0) TCGA-VQ-A94U-01 1 153431505 153431505 G T S100A7 Intron 0.18 TCGA-VQ-A94U-01 1 158906804 158906804 T G PYHIN1 Missense_Mutation p.L35R 0.25 deleterious(0) probably_damaging(1) TCGA-VQ-A94U-01 1 186007091 186007091 A C HMCN1 Silent p.G1925G 0.12 TCGA-VQ-A94U-01 1 19166116 19166116 C T TAS1R2 Missense_Mutation p.G833S 0.29 tolerated(0.33) benign(0.436) TCGA-VQ-A94U-01 1 196643027 196643027 T C CFH Silent p.T95T 0.26 TCGA-VQ-A94U-01 1 196799755 196799755 G A CFHR1 Missense_Mutation p.G245S 0.17 deleterious(0) probably_damaging(1) TCGA-VQ-A94U-01 1 20992815 20992815 G A KIF17 Missense_Mutation p.R935C 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-A94U-01 1 214170629 214170629 C T PROX1 Missense_Mutation p.R251C 0.11 deleterious(0) probably_damaging(0.999) TCGA-VQ-A94U-01 1 215408301 215408301 T A KCNK2 Missense_Mutation p.L365H 0.23 deleterious(0.05) probably_damaging(0.976) TCGA-VQ-A94U-01 1 220156183 220156183 C A EPRS Missense_Mutation p.A1102S 0.24 deleterious(0) probably_damaging(0.999) TCGA-VQ-A94U-01 1 228456452 228456452 G A OBSCN Missense_Mutation p.E1879K 0.19 benign(0.082) TCGA-VQ-A94U-01 1 229438651 229438672 GAGATGCTGCCTTGAGACAGCT - RAB4A Frame_Shift_Del p.D196Gfs*35 0.19 TCGA-VQ-A94U-01 1 229770828 229770828 G A URB2 Silent p.S156S 0.26 TCGA-VQ-A94U-01 1 23418840 23418840 T G LUZP1 Missense_Mutation p.S639R 0.25 tolerated(0.1) possibly_damaging(0.558) TCGA-VQ-A94U-01 1 249142394 249142394 C G ZNF672 Silent p.G307G 0.13 TCGA-VQ-A94U-01 1 26384919 26384919 G A TRIM63 Nonsense_Mutation p.Q265* 0.22 TCGA-VQ-A94U-01 1 44085478 44085478 G A PTPRF Missense_Mutation p.R1687H 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-VQ-A94U-01 1 52870275 52870275 C T PRPF38A 5'UTR 0.38 TCGA-VQ-A94U-01 1 64605914 64605914 C T ROR1 Missense_Mutation p.R245C 0.29 deleterious(0) probably_damaging(0.996) TCGA-VQ-A94U-01 1 74670535 74670535 C T FPGT Silent p.V268V 0.19 TCGA-VQ-A94U-01 1 7798518 7798518 C T CAMTA1 Silent p.C1386C 0.24 TCGA-VQ-A94U-01 1 9804589 9804589 G A CLSTN1 Silent p.N366N 0.14 TCGA-VQ-A94U-01 20 13936766 13936766 C T SEL1L2 Missense_Mutation p.E24K 0.21 tolerated(0.28) benign(0.411) TCGA-VQ-A94U-01 20 37356207 37356207 C T SLC32A1 Missense_Mutation p.A168V 0.18 tolerated(0.14) benign(0.301) TCGA-VQ-A94U-01 20 42744706 42744706 G A JPH2 Missense_Mutation p.R537C 0.23 deleterious(0) possibly_damaging(0.543) TCGA-VQ-A94U-01 20 42876057 42876057 C T GDAP1L1 Missense_Mutation p.A28V 0.29 tolerated_low_confidence(0.34) benign(0.001) TCGA-VQ-A94U-01 20 48129690 48129690 C T PTGIS Missense_Mutation p.R378Q 0.20 deleterious(0) probably_damaging(0.985) TCGA-VQ-A94U-01 20 48604570 48604570 G A SNAI1 Missense_Mutation p.G258S 0.14 deleterious(0.04) possibly_damaging(0.48) TCGA-VQ-A94U-01 20 55758863 55758863 G A BMP7 Silent p.I291I 0.22 TCGA-VQ-A94U-01 20 62324601 62324601 G A RTEL1 Missense_Mutation p.R1010Q 0.28 tolerated(0.35) benign(0.009) TCGA-VQ-A94U-01 20 62608696 62608696 G A SAMD10 Missense_Mutation p.P52L 0.17 deleterious(0.01) benign(0.269) TCGA-VQ-A94U-01 2 110053480 110053480 C A SH3RF3 Missense_Mutation p.A569D 0.32 tolerated(0.07) benign(0.319) TCGA-VQ-A94U-01 2 120439121 120439121 T C TMEM177 Missense_Mutation p.L231P 0.31 tolerated(0.18) possibly_damaging(0.894) TCGA-VQ-A94U-01 2 132021412 132021412 G A POTEE Missense_Mutation p.R795H 0.26 deleterious_low_confidence(0.02) possibly_damaging(0.839) TCGA-VQ-A94U-01 2 145156576 145156576 A G ZEB2 Silent p.S726S 0.23 TCGA-VQ-A94U-01 2 16742257 16742257 C T FAM49A Splice_Site p.X237_splice 0.23 TCGA-VQ-A94U-01 2 16746919 16746919 G A FAM49A Nonsense_Mutation p.R63* 0.22 TCGA-VQ-A94U-01 2 168096450 168096450 A T XIRP2 Missense_Mutation p.K315I 0.34 possibly_damaging(0.476) TCGA-VQ-A94U-01 2 168102105 168102105 A T XIRP2 Missense_Mutation p.E1401D 0.35 benign(0.024) TCGA-VQ-A94U-01 2 1893091 1893091 G A MYT1L Silent p.G812G 0.20 TCGA-VQ-A94U-01 2 196544940 196544940 T C SLC39A10 Silent p.N58N 0.29 TCGA-VQ-A94U-01 2 197183398 197183398 C T HECW2 Missense_Mutation p.R739Q 0.34 deleterious_low_confidence(0.01) benign(0.309) TCGA-VQ-A94U-01 2 21232797 21232797 C A APOB Nonsense_Mutation p.E2315* 0.18 TCGA-VQ-A94U-01 2 215848475 215848475 G A ABCA12 Silent p.H1426H 0.34 TCGA-VQ-A94U-01 2 224462806 224462806 A C SCG2 Missense_Mutation p.L399V 0.15 tolerated(0.36) benign(0.006) TCGA-VQ-A94U-01 2 237247001 237247002 - T IQCA1 Frame_Shift_Ins p.H661Tfs*13 0.22 TCGA-VQ-A94U-01 2 44549030 44549030 G A PREPL Missense_Mutation p.T677I 0.20 tolerated(0.58) benign(0) TCGA-VQ-A94U-01 2 64863248 64863248 G A SERTAD2 Missense_Mutation p.T253M 0.19 deleterious(0) probably_damaging(0.998) TCGA-VQ-A94U-01 2 79349111 79349111 C G REG1A Intron 0.22 TCGA-VQ-A94U-01 2 79384339 79384339 C - REG3A 3'UTR 0.28 TCGA-VQ-A94U-01 2 80529982 80529982 G A LRRTM1 Silent p.N321N 0.24 TCGA-VQ-A94U-01 2 90248938 90248938 G A IGKV1D-43 Missense_Mutation p.A7T 0.19 tolerated(0.52) benign(0.007) TCGA-VQ-A94U-01 3 10916687 10916687 G A SLC6A11 Silent p.L266L 0.30 TCGA-VQ-A94U-01 3 134089665 134089679 GGGCCCTCAGCAGGG - AMOTL2 In_Frame_Del p.P200_P204del 0.30 TCGA-VQ-A94U-01 3 154145319 154145319 G A GPR149 Missense_Mutation p.S387F 0.16 deleterious(0.04) benign(0.02) TCGA-VQ-A94U-01 3 196547286 196547286 C T PAK2 Missense_Mutation p.R400C 0.26 deleterious(0) probably_damaging(1) TCGA-VQ-A94U-01 3 38888112 38888112 A C SCN11A 3'UTR 0.22 TCGA-VQ-A94U-01 3 4821245 4821245 G A ITPR1 Silent p.S2086S 0.23 TCGA-VQ-A94U-01 3 49735355 49735355 C T RNF123 Missense_Mutation p.T127I 0.33 deleterious(0.01) probably_damaging(0.983) TCGA-VQ-A94U-01 3 9877266 9877266 C T TTLL3 3'Flank 0.38 TCGA-VQ-A94U-01 4 138442499 138442499 C T PCDH18 Missense_Mutation p.R1031Q 0.38 tolerated(0.59) benign(0.003) TCGA-VQ-A94U-01 4 158041800 158041800 G A GLRB Missense_Mutation p.R72K 0.09 deleterious(0) probably_damaging(0.992) TCGA-VQ-A94U-01 4 53349 53349 T A ZNF595 5'UTR 0.08 TCGA-VQ-A94U-01 4 71634276 71634276 C T RUFY3 Silent p.A198A 0.26 TCGA-VQ-A94U-01 5 102891773 102891773 G C NUDT12 Missense_Mutation p.L275V 0.23 deleterious(0) possibly_damaging(0.615) TCGA-VQ-A94U-01 5 1064252 1064252 G A SLC12A7 Silent p.I851I 0.19 TCGA-VQ-A94U-01 5 11364949 11364949 G A CTNND2 Missense_Mutation p.R411W 0.26 deleterious(0) probably_damaging(0.929) TCGA-VQ-A94U-01 5 114861052 114861052 C T FEM1C Nonsense_Mutation p.W269* 0.32 TCGA-VQ-A94U-01 5 140229393 140229393 C T PCDHA9 Missense_Mutation p.T438M 0.32 deleterious_low_confidence(0.01) probably_damaging(0.947) TCGA-VQ-A94U-01 5 140712246 140712246 C T PCDHGA1 Silent p.A665A 0.26 TCGA-VQ-A94U-01 5 140719504 140719504 G T PCDHGA2 Missense_Mutation p.Q322H 0.62 tolerated_low_confidence(0.13) benign(0.213) TCGA-VQ-A94U-01 5 140736934 140736934 C T PCDHGA4 Missense_Mutation p.R723C 0.33 deleterious_low_confidence(0.01) benign(0.046) TCGA-VQ-A94U-01 5 140745741 140745741 G T PCDHGA5 Missense_Mutation p.G615V 0.30 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-VQ-A94U-01 5 140750061 140750061 C T PCDHGB3 Missense_Mutation p.R34C 0.26 deleterious(0.02) benign(0.383) TCGA-VQ-A94U-01 5 149580706 149580706 C T SLC6A7 Missense_Mutation p.R260C 0.28 deleterious(0) probably_damaging(0.995) TCGA-VQ-A94U-01 5 150945591 150945591 C T FAT2 Missense_Mutation p.A968T 0.30 benign(0.311) TCGA-VQ-A94U-01 5 153835472 153835472 C T SAP30L Missense_Mutation p.H146Y 0.31 deleterious(0) probably_damaging(0.985) TCGA-VQ-A94U-01 5 173036313 173036314 - T BOD1 Frame_Shift_Ins p.A163Sfs*34 0.19 TCGA-VQ-A94U-01 5 24487671 24487671 G T CDH10 3'UTR 0.33 TCGA-VQ-A94U-01 5 24593604 24593604 C A CDH10 5'UTR 0.31 TCGA-VQ-A94U-01 5 35954526 35954526 G T UGT3A1 Missense_Mutation p.S450R 0.18 tolerated(0.19) possibly_damaging(0.568) TCGA-VQ-A94U-01 5 63871658 63871658 C A RGS7BP Nonsense_Mutation p.C130* 0.17 TCGA-VQ-A94U-01 5 74056769 74056769 T C GFM2 Missense_Mutation p.K36E 0.30 tolerated_low_confidence(0.05) benign(0.003) TCGA-VQ-A94U-01 5 83356228 83356228 G A EDIL3 Missense_Mutation p.T343M 0.23 deleterious(0.04) probably_damaging(0.996) TCGA-VQ-A94U-01 6 136597479 136597479 T C BCLAF1 Missense_Mutation p.N395S 0.11 tolerated(0.91) benign(0.023) TCGA-VQ-A94U-01 6 153019192 153019192 A C MYCT1 Missense_Mutation p.N52T 0.18 deleterious(0) probably_damaging(0.997) TCGA-VQ-A94U-01 6 28501815 28501815 C A GPX5 Silent p.I179I 0.48 TCGA-VQ-A94U-01 6 30460339 30460339 C G HLA-E Missense_Mutation p.S353C 0.22 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-VQ-A94U-01 6 33247058 33247058 G A WDR46 Missense_Mutation p.R610C 0.26 deleterious_low_confidence(0) probably_damaging(0.912) TCGA-VQ-A94U-01 6 33400501 33400501 C T SYNGAP1 Nonsense_Mutation p.R143* 0.27 TCGA-VQ-A94U-01 6 36569545 36569545 G A SRSF3 Silent p.P147P 0.08 TCGA-VQ-A94U-01 6 50016317 50016317 G A DEFB112 Silent p.Y16Y 0.28 TCGA-VQ-A94U-01 6 57072445 57072445 A C RAB23 Missense_Mutation p.I74M 0.29 deleterious(0.04) benign(0.436) TCGA-VQ-A94U-01 6 74533196 74533196 A G CD109 Missense_Mutation p.R1393G 0.27 deleterious(0) possibly_damaging(0.549) TCGA-VQ-A94U-01 6 90362725 90362725 C T MDN1 Missense_Mutation p.D5271N 0.26 unknown(0) TCGA-VQ-A94U-01 7 129847923 129847923 C A SSMEM1 Missense_Mutation p.A58D 0.24 deleterious(0) possibly_damaging(0.82) TCGA-VQ-A94U-01 7 129929437 129929437 T G CPA2 Missense_Mutation p.D370E 0.15 tolerated(0.1) benign(0.022) TCGA-VQ-A94U-01 7 134936546 134936546 A G STRA8 Splice_Site p.X245_splice 0.22 TCGA-VQ-A94U-01 7 34192832 34192832 T G BMPER Missense_Mutation p.L669V 0.34 deleterious(0.02) benign(0.179) TCGA-VQ-A94U-01 7 44609623 44609623 C A DDX56 Missense_Mutation p.R372L 0.19 deleterious(0.02) possibly_damaging(0.841) TCGA-VQ-A94U-01 7 47925618 47925618 C T PKD1L1 Silent p.S957S 0.20 TCGA-VQ-A94U-01 7 74212187 74212187 G A GTF2IRD2 Missense_Mutation p.T555M 0.42 deleterious(0.01) probably_damaging(0.961) TCGA-VQ-A94U-01 7 93516014 93516014 A - TFPI2 3'UTR 0.40 TCGA-VQ-A94U-01 8 104225282 104225282 C T BAALC Missense_Mutation p.T99I 0.20 deleterious(0.02) benign(0.244) TCGA-VQ-A94U-01 8 10755507 10755507 G A XKR6 Silent p.D627D 0.35 TCGA-VQ-A94U-01 8 110598318 110598318 C T SYBU Silent p.A167A 0.33 TCGA-VQ-A94U-01 8 116616161 116616161 G A TRPS1 Missense_Mutation p.H679Y 0.36 tolerated_low_confidence(0.36) possibly_damaging(0.595) TCGA-VQ-A94U-01 8 125072944 125072944 C T FER1L6 Silent p.F1047F 0.08 TCGA-VQ-A94U-01 8 22880271 22880272 TC - TNFRSF10B Frame_Shift_Del p.R412Tfs*7 0.32 TCGA-VQ-A94U-01 8 52321298 52321298 G A PXDNL Silent p.N962N 0.47 TCGA-VQ-A94U-01 8 63978488 63978488 G A TTPA Missense_Mutation p.A176V 0.26 deleterious(0) probably_damaging(0.969) TCGA-VQ-A94U-01 8 69434106 69434106 G A C8orf34 Missense_Mutation p.D280N 0.42 tolerated(0.06) probably_damaging(0.999) TCGA-VQ-A94U-01 8 98078381 98078381 G A CPQ Missense_Mutation p.V400I 0.07 tolerated(0.15) benign(0.02) TCGA-VQ-A94U-01 9 116812551 116812551 G T ZNF618 3'UTR 0.20 TCGA-VQ-A94U-01 9 135267527 135267527 C A TTF1 Silent p.T641T 0.59 TCGA-VQ-A94U-01 9 18706744 18706744 G A ADAMTSL1 Splice_Site p.X525_splice 0.70 TCGA-VQ-A94U-01 9 32635041 32635041 T C TAF1L Silent p.E179E 0.34 TCGA-VQ-A94U-01 9 40716246 40716246 T C FAM74A3 RNA 0.21 TCGA-VQ-A94U-01 9 82323110 82323110 C A TLE4 Missense_Mutation p.N338K 0.30 deleterious(0.02) benign(0.017) TCGA-VQ-A94U-01 9 95599901 95599901 T G ANKRD19P RNA 0.15 TCGA-VQ-A94U-01 X 127185866 127185866 A G ACTRT1 Missense_Mutation p.L107P 0.40 deleterious(0) probably_damaging(0.973) TCGA-VQ-A94U-01 X 146366158 146366158 A C MIR514A3 3'Flank 0.12 TCGA-VQ-A94U-01 X 153588616 153588616 C T FLNA Missense_Mutation p.V1183M 0.35 deleterious(0) probably_damaging(0.986) TCGA-VQ-A94U-01 X 154185309 154185309 C T F8 Missense_Mutation p.E559K 0.33 tolerated(0.1) possibly_damaging(0.677) TCGA-VQ-A94U-01 X 19984405 19984405 T C CXorf23 Missense_Mutation p.Q135R 0.74 tolerated(0.06) possibly_damaging(0.786) TCGA-VQ-AA64-01 10 101370561 101370561 G C SLC25A28 3'UTR 0.43 TCGA-VQ-AA64-01 10 409196 409196 C T DIP2C Missense_Mutation p.E845K 0.37 deleterious(0) probably_damaging(0.98) TCGA-VQ-AA64-01 10 51465522 51465522 T A AGAP7 Missense_Mutation p.T312S 0.25 tolerated(0.14) possibly_damaging(0.484) TCGA-VQ-AA64-01 10 61566727 61566727 A T CCDC6 Nonsense_Mutation p.C319* 0.33 TCGA-VQ-AA64-01 10 75557641 75557641 C G ZSWIM8 Missense_Mutation p.I1255M 0.42 tolerated(0.1) probably_damaging(0.97) TCGA-VQ-AA64-01 10 91465059 91465059 C G KIF20B Missense_Mutation p.S3C 0.10 deleterious(0.05) probably_damaging(0.998) TCGA-VQ-AA64-01 11 105924369 105924369 A G KBTBD3 Silent p.G349G 0.39 TCGA-VQ-AA64-01 11 117869669 117869669 C T IL10RA Silent p.N350N 0.37 TCGA-VQ-AA64-01 11 126137505 126137506 TT - SRPR Frame_Shift_Del p.S102Cfs*10 0.20 TCGA-VQ-AA64-01 11 128709089 128709089 C T KCNJ1 Missense_Mutation p.M369I 0.26 tolerated(0.2) benign(0.001) TCGA-VQ-AA64-01 11 22257761 22257761 G A ANO5 Missense_Mutation p.R234K 0.29 tolerated(1) benign(0.002) TCGA-VQ-AA64-01 11 33090282 33090282 C G TCP11L1 Missense_Mutation p.L402V 0.28 tolerated(0.8) benign(0.012) TCGA-VQ-AA64-01 11 45671388 45671388 G T CHST1 Missense_Mutation p.F362L 0.23 tolerated(0.88) benign(0.002) TCGA-VQ-AA64-01 11 55579185 55579185 G T OR5L1 Missense_Mutation p.M81I 0.34 deleterious(0.02) benign(0.033) TCGA-VQ-AA64-01 11 6190876 6190876 C A OR52B2 Silent p.V227V 0.15 TCGA-VQ-AA64-01 11 62996917 62996917 C T SLC22A25 Missense_Mutation p.D70N 0.35 deleterious(0.01) benign(0.104) TCGA-VQ-AA64-01 11 66436703 66436703 C G RBM4B Missense_Mutation p.D158H 0.32 deleterious(0.01) possibly_damaging(0.572) TCGA-VQ-AA64-01 11 67017744 67017744 A G KDM2A Missense_Mutation p.H748R 0.23 tolerated(0.57) benign(0.031) TCGA-VQ-AA64-01 11 7071005 7071005 G T NLRP14 Missense_Mutation p.D743Y 0.35 deleterious(0.03) possibly_damaging(0.58) TCGA-VQ-AA64-01 11 71729976 71729976 G A NUMA1 Missense_Mutation p.P212L 0.22 probably_damaging(1) TCGA-VQ-AA64-01 11 74047715 74047715 C G PGM2L1 Silent p.L617L 0.19 TCGA-VQ-AA64-01 11 86055663 86055663 G A C11orf73 Missense_Mutation p.D147N 0.30 tolerated(0.06) possibly_damaging(0.816) TCGA-VQ-AA64-01 11 92534447 92534447 C T FAT3 Silent p.F2756F 0.43 TCGA-VQ-AA64-01 12 102589958 102589958 A G PARPBP Silent p.S543S 0.50 TCGA-VQ-AA64-01 12 111744747 111744747 G C CUX2 Missense_Mutation p.C294S 0.30 tolerated(0.05) possibly_damaging(0.677) TCGA-VQ-AA64-01 12 118636915 118636915 C A TAOK3 Missense_Mutation p.V379F 0.45 tolerated(0.23) benign(0.025) TCGA-VQ-AA64-01 12 132237751 132237751 G A SFSWAP Missense_Mutation p.V389M 0.31 tolerated(0.08) possibly_damaging(0.454) TCGA-VQ-AA64-01 12 15637124 15637124 G A PTPRO Missense_Mutation p.V98I 0.29 tolerated_low_confidence(0.29) benign(0.004) TCGA-VQ-AA64-01 12 15823802 15823802 T C EPS8 Silent p.Q64Q 0.26 TCGA-VQ-AA64-01 12 21242939 21242939 G A SLCO1B7 Missense_Mutation p.D608N 0.26 tolerated(0.47) benign(0.017) TCGA-VQ-AA64-01 12 25260796 25260796 C T LRMP Silent p.I434I 0.35 TCGA-VQ-AA64-01 12 4461650 4461650 G A C12orf5 Missense_Mutation p.M202I 0.23 tolerated(0.32) benign(0.004) TCGA-VQ-AA64-01 12 4919521 4919521 G A KCNA6 Missense_Mutation p.R105H 0.40 deleterious(0) probably_damaging(0.997) TCGA-VQ-AA64-01 12 49743197 49743215 GGCTCTATCGTCTGGGCTT - DNAJC22 Frame_Shift_Del p.Y183Tfs*31 0.55 TCGA-VQ-AA64-01 12 52183161 52183161 A T SCN8A Missense_Mutation p.I1460F 0.43 deleterious(0) probably_damaging(0.975) TCGA-VQ-AA64-01 12 56726848 56726848 C G PAN2 Missense_Mutation p.A11P 0.43 deleterious_low_confidence(0.03) possibly_damaging(0.462) TCGA-VQ-AA64-01 12 66357040 66357041 AC - HMGA2 Frame_Shift_Del p.T100Ifs*116 0.25 TCGA-VQ-AA64-01 12 75436988 75436988 G A KCNC2 Missense_Mutation p.A605V 0.34 deleterious_low_confidence(0.05) benign(0.015) TCGA-VQ-AA64-01 13 25066690 25066690 G A PARP4 Silent p.L308L 0.33 TCGA-VQ-AA64-01 13 27333356 27333356 C T GPR12 Silent p.S203S 0.28 TCGA-VQ-AA64-01 13 32752543 32752543 T G FRY Missense_Mutation p.L884R 0.05 deleterious(0) probably_damaging(0.937) TCGA-VQ-AA64-01 13 37427627 37427627 A T SMAD9 Missense_Mutation p.S397T 0.31 tolerated(0.06) benign(0.062) TCGA-VQ-AA64-01 13 38159011 38159011 C G POSTN Missense_Mutation p.G317A 0.19 tolerated(1) possibly_damaging(0.789) TCGA-VQ-AA64-01 13 43180637 43180637 C T TNFSF11 Silent p.S179S 0.25 TCGA-VQ-AA64-01 13 50056987 50056987 G T SETDB2 Missense_Mutation p.C436F 0.23 tolerated(0.06) possibly_damaging(0.691) TCGA-VQ-AA64-01 13 61102950 61102950 C G TDRD3 Missense_Mutation p.Q531E 0.10 tolerated(0.11) benign(0.168) TCGA-VQ-AA64-01 13 79175718 79175718 C T POU4F1 Silent p.A364A 0.33 TCGA-VQ-AA64-01 13 88328821 88328821 G T SLITRK5 Missense_Mutation p.C393F 0.46 deleterious(0) probably_damaging(1) TCGA-VQ-AA64-01 13 98655156 98655159 CAAT - IPO5 Frame_Shift_Del p.Q474Vfs*30 0.35 TCGA-VQ-AA64-01 14 100381014 100381014 G T EML1 Missense_Mutation p.V597F 0.50 deleterious(0.05) possibly_damaging(0.569) TCGA-VQ-AA64-01 14 45513968 45513968 A T FAM179B Missense_Mutation p.E1350V 0.22 deleterious(0) probably_damaging(0.963) TCGA-VQ-AA64-01 14 95090226 95090226 G T SERPINA3 3'UTR 0.14 TCGA-VQ-AA64-01 15 20658895 20658895 T A HERC2P3 RNA 0.12 TCGA-VQ-AA64-01 15 24921476 24921476 A G NPAP1 Silent p.Q154Q 0.27 TCGA-VQ-AA64-01 15 25924926 25924926 A G ATP10A Silent p.S1354S 0.13 TCGA-VQ-AA64-01 15 28273038 28273038 C T OCA2 Missense_Mutation p.R165Q 0.33 tolerated(0.14) benign(0.071) TCGA-VQ-AA64-01 15 29346409 29346409 G A APBA2 Missense_Mutation p.D108N 0.20 deleterious_low_confidence(0) benign(0.324) TCGA-VQ-AA64-01 15 29346923 29346923 C T APBA2 Missense_Mutation p.A279V 0.29 tolerated_low_confidence(0.11) benign(0.016) TCGA-VQ-AA64-01 15 43661250 43661250 T G ZSCAN29 Missense_Mutation p.S132R 0.40 tolerated(0.23) benign(0.117) TCGA-VQ-AA64-01 15 74364618 74364618 C T GOLGA6A Missense_Mutation p.E512K 0.11 deleterious(0.01) probably_damaging(0.96) TCGA-VQ-AA64-01 15 85163987 85163987 C G ZSCAN2 Silent p.L187L 0.40 TCGA-VQ-AA64-01 16 15797744 15797744 A C MYH11 3'UTR 0.31 TCGA-VQ-AA64-01 16 19468330 19468330 C A TMC5 Intron 0.22 TCGA-VQ-AA64-01 16 20807814 20807814 A C ACSM3 Intron 0.28 TCGA-VQ-AA64-01 16 23640533 23640533 C A PALB2 Nonsense_Mutation p.E860* 0.25 TCGA-VQ-AA64-01 16 23700552 23700572 TCCCTAGGGTATCAGCTCTGT GA PLK1 Splice_Site p.X424_splice 0.18 TCGA-VQ-AA64-01 16 24955097 24955097 G C ARHGAP17 Missense_Mutation p.P443R 0.31 deleterious(0.01) probably_damaging(0.939) TCGA-VQ-AA64-01 16 31073068 31073068 C T ZNF668 Nonsense_Mutation p.Q86* 0.31 TCGA-VQ-AA64-01 16 31090969 31090969 G C ZNF646 Missense_Mutation p.E1108D 0.24 tolerated(0.06) probably_damaging(0.978) TCGA-VQ-AA64-01 16 31501388 31501388 A G C16orf58 3'UTR 0.32 TCGA-VQ-AA64-01 16 55844440 55844440 C T CES1 Missense_Mutation p.R436Q 0.25 tolerated(0.08) possibly_damaging(0.451) TCGA-VQ-AA64-01 16 58615341 58615341 G A CNOT1 Missense_Mutation p.H375Y 0.28 deleterious(0.03) benign(0.05) TCGA-VQ-AA64-01 16 66950203 66950203 C A CDH16 Nonsense_Mutation p.E87* 0.30 TCGA-VQ-AA64-01 16 69353290 69353290 G T VPS4A Missense_Mutation p.G155V 0.31 deleterious(0) probably_damaging(0.995) TCGA-VQ-AA64-01 16 70796865 70796865 G A VAC14 Silent p.L408L 0.38 TCGA-VQ-AA64-01 16 70906012 70906012 G T HYDIN Silent p.V3673V 0.17 TCGA-VQ-AA64-01 16 739545 739545 G T WDR24 Silent p.I32I 0.29 TCGA-VQ-AA64-01 16 76556084 76556092 GACACCAAA - CNTNAP4 In_Frame_Del p.P824_T826del 0.26 TCGA-VQ-AA64-01 17 18220814 18220814 G A SMCR8 Missense_Mutation p.E571K 0.37 tolerated(0.36) benign(0.37) TCGA-VQ-AA64-01 17 29120654 29120654 G A CRLF3 Nonsense_Mutation p.Q214* 0.18 TCGA-VQ-AA64-01 17 33497234 33497234 A C UNC45B Missense_Mutation p.Q550P 0.18 deleterious(0.02) benign(0.162) TCGA-VQ-AA64-01 17 33806505 33806505 G C SLFN12L Missense_Mutation p.Q242E 0.15 tolerated(0.07) possibly_damaging(0.458) TCGA-VQ-AA64-01 17 3801051 3801051 C T P2RX1 3'UTR 0.30 TCGA-VQ-AA64-01 17 39633417 39633417 G A KRT35 Missense_Mutation p.S420F 0.30 deleterious(0.04) benign(0.243) TCGA-VQ-AA64-01 17 43227133 43227133 G C HEXIM1 Missense_Mutation p.E192D 0.20 deleterious(0) probably_damaging(0.958) TCGA-VQ-AA64-01 17 4536549 4536549 G T ALOX15 Missense_Mutation p.T437N 0.21 deleterious(0) probably_damaging(0.916) TCGA-VQ-AA64-01 17 4642180 4642182 AAC - CXCL16 In_Frame_Del p.C57del 0.33 TCGA-VQ-AA64-01 17 4720275 4720275 C A PLD2 Missense_Mutation p.D542E 0.23 deleterious(0) probably_damaging(0.982) TCGA-VQ-AA64-01 17 47679346 47679346 G A SPOP Silent p.V287V 0.21 TCGA-VQ-AA64-01 17 48681643 48681643 G C CACNA1G Splice_Site p.X1432_splice 0.25 TCGA-VQ-AA64-01 17 7140063 7140063 G A PHF23 Silent p.G61G 0.52 TCGA-VQ-AA64-01 17 7140065 7140065 C A PHF23 Missense_Mutation p.G61C 0.50 tolerated(0.06) probably_damaging(0.984) TCGA-VQ-AA64-01 17 76492113 76492113 A C DNAH17 Missense_Mutation p.V1902G 0.40 probably_damaging(0.978) TCGA-VQ-AA64-01 17 7673601 7673601 C T DNAH2 Missense_Mutation p.R1325W 0.35 benign(0.001) TCGA-VQ-AA64-01 17 78073564 78073564 G A CCDC40 Missense_Mutation p.G1140E 0.22 tolerated(0.47) benign(0.025) TCGA-VQ-AA64-01 17 78199674 78199674 C A SLC26A11 Missense_Mutation p.F184L 0.32 tolerated(0.14) benign(0.007) TCGA-VQ-AA64-01 17 79219876 79219883 CCTTCCGC - SLC38A10 Frame_Shift_Del p.A945Sfs*19 0.32 TCGA-VQ-AA64-01 17 79943427 79943427 C G ASPSCR1 Missense_Mutation p.D106E 0.20 deleterious(0.02) unknown(0) TCGA-VQ-AA64-01 17 80992958 80992958 G C B3GNTL1 Missense_Mutation p.Q99E 0.21 deleterious(0.04) benign(0.152) TCGA-VQ-AA64-01 18 12512454 12512454 C A SPIRE1 Missense_Mutation p.W269L 0.28 deleterious(0) probably_damaging(0.999) TCGA-VQ-AA64-01 18 22807351 22807351 A G ZNF521 Silent p.S177S 0.21 TCGA-VQ-AA64-01 18 24722803 24722803 A T CHST9 5'UTR 0.22 TCGA-VQ-AA64-01 18 2892084 2892084 G A EMILIN2 Silent p.V653V 0.19 TCGA-VQ-AA64-01 18 31599567 31599567 T G NOL4 Splice_Site p.X258_splice 0.45 TCGA-VQ-AA64-01 18 3187531 3187533 CTC - MYOM1 In_Frame_Del p.E292del 0.26 TCGA-VQ-AA64-01 18 48510469 48510469 G C ELAC1 Missense_Mutation p.R54T 0.36 deleterious(0.01) possibly_damaging(0.781) TCGA-VQ-AA64-01 19 18084803 18084803 C A KCNN1 Missense_Mutation p.P36T 0.33 tolerated_low_confidence(0.85) benign(0.007) TCGA-VQ-AA64-01 19 18474288 18474288 G A PGPEP1 Silent p.P175P 0.50 TCGA-VQ-AA64-01 19 18507089 18507107 GCTTGGGGGCGCTCCGGCT - LRRC25 Frame_Shift_Del p.S223Pfs*73 0.45 TCGA-VQ-AA64-01 19 36884063 36884063 A C ZFP82 Silent p.P393P 0.32 TCGA-VQ-AA64-01 19 38706825 38706827 CCG - DPF1 In_Frame_Del p.T311_G312delinsR 0.26 TCGA-VQ-AA64-01 19 40882516 40882516 G T PLD3 Missense_Mutation p.R340S 0.23 deleterious(0.03) benign(0.314) TCGA-VQ-AA64-01 19 42301599 42301599 G A CEACAM3 Missense_Mutation p.G48E 0.30 deleterious(0) probably_damaging(0.999) TCGA-VQ-AA64-01 19 4447603 4447603 G T UBXN6 Missense_Mutation p.L187M 0.25 tolerated(0.16) probably_damaging(0.961) TCGA-VQ-AA64-01 19 4510955 4510955 C A PLIN4 Missense_Mutation p.S992I 0.28 deleterious(0.02) benign(0.163) TCGA-VQ-AA64-01 19 45767970 45767970 G A MARK4 Silent p.E128E 0.30 TCGA-VQ-AA64-01 19 46124882 46124882 G C EML2 Missense_Mutation p.I486M 0.20 deleterious(0.01) probably_damaging(0.914) TCGA-VQ-AA64-01 19 47844533 47844533 G T C5AR2 Missense_Mutation p.W159C 0.30 deleterious(0) probably_damaging(1) TCGA-VQ-AA64-01 19 49362173 49362173 C A PLEKHA4 Missense_Mutation p.G306W 0.34 deleterious(0.01) probably_damaging(0.952) TCGA-VQ-AA64-01 19 50657929 50657929 C A IZUMO2 Missense_Mutation p.R184M 0.25 deleterious(0.02) possibly_damaging(0.702) TCGA-VQ-AA64-01 19 54744329 54744329 C T LILRA6 Missense_Mutation p.G360E 0.16 deleterious(0.02) probably_damaging(0.991) TCGA-VQ-AA64-01 19 54849264 54849264 T A LILRA4 Missense_Mutation p.N200Y 0.13 deleterious(0) benign(0.37) TCGA-VQ-AA64-01 19 57065906 57065906 T C ZFP28 Silent p.S584S 0.30 TCGA-VQ-AA64-01 19 58096321 58096321 T C ZIK1 Missense_Mutation p.V12A 0.18 tolerated(0.61) possibly_damaging(0.539) TCGA-VQ-AA64-01 19 58490439 58490439 C A ZNF606 Nonsense_Mutation p.E537* 0.25 TCGA-VQ-AA64-01 19 7805921 7805921 T C CD209 3'UTR 0.14 TCGA-VQ-AA64-01 19 9009598 9009598 A G MUC16 Missense_Mutation p.L13043P 0.21 probably_damaging(0.984) TCGA-VQ-AA64-01 19 9406674 9406674 T G ZNF699 Missense_Mutation p.H469P 0.44 deleterious(0) probably_damaging(0.99) TCGA-VQ-AA64-01 1 100608729 100608729 G C TRMT13 Missense_Mutation p.E236Q 0.12 deleterious(0.04) possibly_damaging(0.483) TCGA-VQ-AA64-01 1 10407834 10407834 G C KIF1B Silent p.V1225V 0.18 TCGA-VQ-AA64-01 1 104114338 104114338 T A AMY2B Missense_Mutation p.D38E 0.10 deleterious(0.01) probably_damaging(1) TCGA-VQ-AA64-01 1 10477123 10477123 G T PGD Missense_Mutation p.Q308H 0.09 tolerated(0.15) benign(0) TCGA-VQ-AA64-01 1 12164565 12164577 CAGGGATGATTGT - TNFRSF8 Frame_Shift_Del p.G134Sfs*57 0.27 TCGA-VQ-AA64-01 1 12409363 12409363 G C VPS13D Missense_Mutation p.K3121N 0.27 benign(0.032) TCGA-VQ-AA64-01 1 150526868 150526868 C G ADAMTSL4 Missense_Mutation p.R387G 0.49 deleterious(0) probably_damaging(0.975) TCGA-VQ-AA64-01 1 152636819 152636819 C G LCE2D Missense_Mutation p.L80V 0.21 tolerated_low_confidence(0.26) unknown(0) TCGA-VQ-AA64-01 1 156108450 156108458 CGCAGCTAC - LMNA In_Frame_Del p.Y626_S628del 0.58 TCGA-VQ-AA64-01 1 156351951 156351951 C A RHBG Silent p.V357V 0.22 TCGA-VQ-AA64-01 1 158390021 158390021 C A OR10K2 Missense_Mutation p.L212F 0.15 tolerated(0.51) benign(0.026) TCGA-VQ-AA64-01 1 160250017 160250018 CT - PEX19 Frame_Shift_Del p.H206Sfs*10 0.35 TCGA-VQ-AA64-01 1 161192282 161192282 C T AL590714.1 Nonsense_Mutation p.Q73* 0.46 TCGA-VQ-AA64-01 1 161199036 161199036 C G TOMM40L 3'UTR 0.50 TCGA-VQ-AA64-01 1 174188349 174188349 T G RABGAP1L Silent p.A18A 0.47 TCGA-VQ-AA64-01 1 179087778 179087778 C T ABL2 Missense_Mutation p.M389I 0.51 deleterious(0.04) probably_damaging(0.996) TCGA-VQ-AA64-01 1 186277676 186277676 C G PRG4 Missense_Mutation p.A942G 0.25 unknown(0) TCGA-VQ-AA64-01 1 204082150 204082150 C - SOX13 Frame_Shift_Del p.Q38Rfs*71 0.20 TCGA-VQ-AA64-01 1 206767100 206767100 A G EIF2D Missense_Mutation p.Y518H 0.17 tolerated(0.37) possibly_damaging(0.608) TCGA-VQ-AA64-01 1 211486765 211486765 G C RCOR3 Splice_Site p.X440_splice 0.36 TCGA-VQ-AA64-01 1 211533329 211533329 G C TRAF5 Missense_Mutation p.D152H 0.23 deleterious(0) probably_damaging(0.92) TCGA-VQ-AA64-01 1 222757581 222757581 A G TAF1A Silent p.F60F 0.25 TCGA-VQ-AA64-01 1 226062032 226062034 TCT - TMEM63A In_Frame_Del p.R74del 0.15 TCGA-VQ-AA64-01 1 22843905 22843905 C G ZBTB40 Silent p.G927G 0.16 TCGA-VQ-AA64-01 1 228646202 228646202 C T HIST3H2BB Silent p.S124S 0.21 TCGA-VQ-AA64-01 1 235907346 235907346 G C LYST Missense_Mutation p.S2695C 0.36 tolerated(0.07) benign(0.115) TCGA-VQ-AA64-01 1 236195819 236195819 G A NID1 Silent p.I473I 0.18 TCGA-VQ-AA64-01 1 237777617 237777617 C T RYR2 Missense_Mutation p.T1730M 0.48 probably_damaging(0.98) TCGA-VQ-AA64-01 1 24706218 24706218 C T STPG1 Silent p.S129S 0.34 TCGA-VQ-AA64-01 1 248262919 248262919 C T OR2L13 Missense_Mutation p.A81V 0.17 tolerated(0.28) benign(0.004) TCGA-VQ-AA64-01 1 248367241 248367241 G T OR2M3 Missense_Mutation p.S291I 0.29 deleterious(0) probably_damaging(0.917) TCGA-VQ-AA64-01 1 248512207 248512207 T G OR14C36 Missense_Mutation p.V44G 0.04 deleterious(0) possibly_damaging(0.703) TCGA-VQ-AA64-01 1 2526271 2526271 T A MMEL1 Missense_Mutation p.Q549L 0.31 deleterious(0.05) benign(0.423) TCGA-VQ-AA64-01 1 25880537 25880537 C G LDLRAP1 Missense_Mutation p.I71M 0.39 deleterious(0) possibly_damaging(0.466) TCGA-VQ-AA64-01 1 40723879 40723879 T A ZMPSTE24 5'UTR 0.26 TCGA-VQ-AA64-01 1 4829961 4829961 T C AJAP1 Missense_Mutation p.V293A 0.09 deleterious(0.02) benign(0) TCGA-VQ-AA64-01 1 50666501 50666501 C T ELAVL4 Intron 0.12 TCGA-VQ-AA64-01 1 62993971 62993971 G C DOCK7 Missense_Mutation p.H1232D 0.23 tolerated(0.67) benign(0.062) TCGA-VQ-AA64-01 1 65871577 65871584 CCACCACA - DNAJC6 Frame_Shift_Del p.T752Nfs*39 0.19 TCGA-VQ-AA64-01 1 67795384 67795384 G A IL12RB2 Missense_Mutation p.R260Q 0.23 deleterious(0.03) possibly_damaging(0.709) TCGA-VQ-AA64-01 1 75862266 75862266 A G SLC44A5 Splice_Site p.X18_splice 0.47 TCGA-VQ-AA64-01 1 7737777 7737777 C T CAMTA1 Silent p.D966D 0.15 TCGA-VQ-AA64-01 1 86939234 86939234 C A CLCA1 Nonsense_Mutation p.Y99* 0.06 TCGA-VQ-AA64-01 1 9078424 9078424 G A SLC2A7 Silent p.Y149Y 0.14 TCGA-VQ-AA64-01 20 40727175 40727175 G A PTPRT Silent p.A1244A 0.11 TCGA-VQ-AA64-01 20 44511672 44511672 G T ZSWIM1 Silent p.V147V 0.14 TCGA-VQ-AA64-01 20 47868062 47868062 A C ZNFX1 Splice_Site p.X1104_splice 0.20 TCGA-VQ-AA64-01 20 60966047 60966047 G A CABLES2 Missense_Mutation p.R473C 0.54 deleterious(0) probably_damaging(0.999) TCGA-VQ-AA64-01 20 61828078 61828078 C G YTHDF1 Missense_Mutation p.Q554H 0.18 deleterious_low_confidence(0.01) probably_damaging(0.952) TCGA-VQ-AA64-01 20 61982142 61982142 G A CHRNA4 Silent p.G207G 0.18 TCGA-VQ-AA64-01 21 19666927 19666927 G A TMPRSS15 Silent p.N768N 0.23 TCGA-VQ-AA64-01 21 19666929 19666929 T A TMPRSS15 Missense_Mutation p.N768Y 0.23 deleterious(0) probably_damaging(0.987) TCGA-VQ-AA64-01 21 28296328 28296328 C A ADAMTS5 3'UTR 0.31 TCGA-VQ-AA64-01 21 32519235 32519235 T G TIAM1 Missense_Mutation p.K1151N 0.16 deleterious(0) probably_damaging(0.925) TCGA-VQ-AA64-01 21 38510989 38510989 C G TTC3 Missense_Mutation p.S545C 0.24 deleterious(0) probably_damaging(0.971) TCGA-VQ-AA64-01 21 41450876 41450876 C G DSCAM Silent p.L1483L 0.22 TCGA-VQ-AA64-01 21 44524548 44524548 G A U2AF1 Intron 0.34 TCGA-VQ-AA64-01 22 31285562 31285562 T A OSBP2 Missense_Mutation p.L521H 0.28 deleterious(0) probably_damaging(0.998) TCGA-VQ-AA64-01 22 32586771 32586771 C A RFPL2 Silent p.G375G 0.29 TCGA-VQ-AA64-01 22 35779128 35779128 A C HMOX1 Missense_Mutation p.K18T 0.36 deleterious(0) probably_damaging(0.996) TCGA-VQ-AA64-01 22 41735950 41735950 T G ZC3H7B Missense_Mutation p.L316R 0.30 deleterious(0.01) probably_damaging(0.982) TCGA-VQ-AA64-01 22 45782829 45782829 T A SMC1B Missense_Mutation p.Q610L 0.31 tolerated(0.47) probably_damaging(0.99) TCGA-VQ-AA64-01 2 105900790 105900790 T C TGFBRAP1 Silent p.E368E 0.25 TCGA-VQ-AA64-01 2 105900792 105900792 C A TGFBRAP1 Nonsense_Mutation p.E368* 0.26 TCGA-VQ-AA64-01 2 133542035 133542035 C G NCKAP5 Missense_Mutation p.Q783H 0.21 tolerated(0.13) benign(0.066) TCGA-VQ-AA64-01 2 173883459 173883459 T C RAPGEF4 Missense_Mutation p.V695A 0.25 deleterious(0) benign(0.247) TCGA-VQ-AA64-01 2 178095977 178095977 C T NFE2L2 Missense_Mutation p.A452T 0.24 deleterious(0.02) benign(0.234) TCGA-VQ-AA64-01 2 179571338 179571338 T G TTN Missense_Mutation p.K9755Q 0.10 TCGA-VQ-AA64-01 2 179615944 179615944 C G TTN Intron 0.32 TCGA-VQ-AA64-01 2 180309623 180309623 G A ZNF385B Missense_Mutation p.R393W 0.28 deleterious(0) probably_damaging(0.999) TCGA-VQ-AA64-01 2 1914023 1914023 G T MYT1L Missense_Mutation p.D600E 0.29 deleterious(0.02) probably_damaging(0.994) TCGA-VQ-AA64-01 2 198324691 198324691 C G COQ10B Missense_Mutation p.T47S 0.22 tolerated(0.59) benign(0.002) TCGA-VQ-AA64-01 2 200298164 200298164 G A SATB2 Silent p.H81H 0.14 TCGA-VQ-AA64-01 2 210887755 210887755 T C KANSL1L Missense_Mutation p.H961R 0.05 deleterious_low_confidence(0.04) benign(0.012) TCGA-VQ-AA64-01 2 215815800 215815800 A C ABCA12 Missense_Mutation p.F2219V 0.19 tolerated(0.44) benign(0.017) TCGA-VQ-AA64-01 2 215865536 215865539 TAAA - ABCA12 Frame_Shift_Del p.L1024Rfs*20 0.13 TCGA-VQ-AA64-01 2 233398998 233398998 G T CHRND Silent p.V439V 0.07 TCGA-VQ-AA64-01 2 234637946 234637946 A G UGT1A3 Silent p.A58A 0.15 TCGA-VQ-AA64-01 2 234637991 234637991 C A UGT1A3 Missense_Mutation p.N73K 0.11 tolerated(1) benign(0.002) TCGA-VQ-AA64-01 2 29087918 29087918 C A TRMT61B Missense_Mutation p.G256V 0.37 deleterious(0) probably_damaging(1) TCGA-VQ-AA64-01 2 30143013 30143013 G A ALK Silent p.S171S 0.48 TCGA-VQ-AA64-01 2 36691786 36691786 G C CRIM1 Missense_Mutation p.E327Q 0.51 tolerated(0.13) probably_damaging(0.968) TCGA-VQ-AA64-01 2 37474657 37474657 C A NDUFAF7 Missense_Mutation p.T332K 0.22 deleterious(0) probably_damaging(0.994) TCGA-VQ-AA64-01 2 39262356 39262356 C G SOS1 Missense_Mutation p.L357F 0.36 tolerated(0.07) possibly_damaging(0.887) TCGA-VQ-AA64-01 2 58373508 58373509 - A VRK2 Frame_Shift_Ins p.V364Sfs*4 0.29 TCGA-VQ-AA64-01 2 60687594 60687594 T G BCL11A Missense_Mutation p.H818P 0.31 deleterious(0) probably_damaging(0.991) TCGA-VQ-AA64-01 2 69757802 69757802 G C AAK1 Silent p.V231V 0.11 TCGA-VQ-AA64-01 2 74154140 74154140 G A DGUOK Missense_Mutation p.G35R 0.16 tolerated(0.21) benign(0.033) TCGA-VQ-AA64-01 2 79363223 79363223 A C REG1P RNA 0.14 TCGA-VQ-AA64-01 2 95815043 95815043 C G ZNF514 Missense_Mutation p.G396A 0.32 deleterious(0) possibly_damaging(0.658) TCGA-VQ-AA64-01 2 96691727 96691727 C A GPAT2 Missense_Mutation p.G397C 0.23 deleterious(0.02) unknown(0) TCGA-VQ-AA64-01 3 113955131 113955131 C G ZNF80 Missense_Mutation p.S264T 0.34 deleterious(0.02) benign(0.01) TCGA-VQ-AA64-01 3 118931607 118931607 G T B4GALT4 Intron 0.20 TCGA-VQ-AA64-01 3 119217735 119217735 A G TIMMDC1 Missense_Mutation p.E52G 0.26 tolerated(0.1) possibly_damaging(0.697) TCGA-VQ-AA64-01 3 124826632 124826632 G T SLC12A8 Silent p.L466L 0.25 TCGA-VQ-AA64-01 3 126725006 126725006 G A PLXNA1 Missense_Mutation p.C661Y 0.25 deleterious(0) probably_damaging(0.999) TCGA-VQ-AA64-01 3 130678129 130678132 GTTG - ATP2C1 Frame_Shift_Del p.V317Afs*16 0.12 TCGA-VQ-AA64-01 3 140406647 140406647 G C TRIM42 Missense_Mutation p.E375Q 0.33 deleterious(0.01) probably_damaging(0.983) TCGA-VQ-AA64-01 3 141289902 141289902 G C RASA2 Missense_Mutation p.D338H 0.31 tolerated(0.12) possibly_damaging(0.819) TCGA-VQ-AA64-01 3 151171441 151171441 A G IGSF10 Missense_Mutation p.F149S 0.34 deleterious(0) probably_damaging(1) TCGA-VQ-AA64-01 3 153972596 153972596 A G ARHGEF26 Missense_Mutation p.Y819C 0.29 deleterious(0.02) probably_damaging(0.976) TCGA-VQ-AA64-01 3 155838601 155838601 G A KCNAB1 Silent p.E67E 0.27 TCGA-VQ-AA64-01 3 184008857 184008857 C T ECE2 Missense_Mutation p.R740W 0.38 tolerated(0.06) probably_damaging(0.963) TCGA-VQ-AA64-01 3 186571982 186571982 G T ADIPOQ Missense_Mutation p.G75V 0.30 deleterious(0) probably_damaging(1) TCGA-VQ-AA64-01 3 38739228 38739228 T G SCN10A Missense_Mutation p.K1828T 0.30 deleterious(0) probably_damaging(0.999) TCGA-VQ-AA64-01 3 42730382 42730382 C A KLHL40 Nonsense_Mutation p.C481* 0.40 TCGA-VQ-AA64-01 3 47467586 47467586 G T SCAP Missense_Mutation p.L271M 0.60 tolerated(0.63) benign(0.016) TCGA-VQ-AA64-01 3 52387396 52387396 C A DNAH1 Missense_Mutation p.A1076D 0.36 benign(0.008) TCGA-VQ-AA64-01 3 78701045 78701045 T G ROBO1 Missense_Mutation p.Q883H 0.07 deleterious(0.04) probably_damaging(0.976) TCGA-VQ-AA64-01 4 111397844 111397844 C T ENPEP Nonsense_Mutation p.R92* 0.31 TCGA-VQ-AA64-01 4 123663197 123663197 C T BBS12 Silent p.I50I 0.30 TCGA-VQ-AA64-01 4 128865023 128865023 A G MFSD8 Missense_Mutation p.I108T 0.28 tolerated(0.08) benign(0.008) TCGA-VQ-AA64-01 4 139153455 139153455 T C SLC7A11 Silent p.E162E 0.22 TCGA-VQ-AA64-01 4 155665616 155665616 C T LRAT Silent p.H46H 0.28 TCGA-VQ-AA64-01 4 22446673 22446673 C G GPR125 Missense_Mutation p.R210P 0.33 tolerated(0.09) possibly_damaging(0.604) TCGA-VQ-AA64-01 4 3015478 3015478 A G GRK4 Missense_Mutation p.R222G 0.28 deleterious(0) probably_damaging(0.958) TCGA-VQ-AA64-01 4 42509136 42509136 A T ATP8A1 Missense_Mutation p.D661E 0.28 deleterious(0.01) benign(0.016) TCGA-VQ-AA64-01 4 44691984 44691984 T C GUF1 Silent p.L443L 0.32 TCGA-VQ-AA64-01 4 47570894 47570894 T G ATP10D Missense_Mutation p.L965R 0.16 deleterious(0.01) probably_damaging(0.936) TCGA-VQ-AA64-01 4 5843043 5843043 C T CRMP1 Missense_Mutation p.R382K 0.27 tolerated(0.32) benign(0.371) TCGA-VQ-AA64-01 4 76805842 76805842 T A PPEF2 Silent p.V217V 0.29 TCGA-VQ-AA64-01 4 83852119 83852119 T A LIN54 Silent p.P675P 0.11 TCGA-VQ-AA64-01 5 149677472 149677472 G A ARSI Missense_Mutation p.R339W 0.62 tolerated(0.06) probably_damaging(0.941) TCGA-VQ-AA64-01 5 151784790 151784790 C T NMUR2 5'UTR 0.55 TCGA-VQ-AA64-01 5 169141089 169141089 C A DOCK2 Missense_Mutation p.H573N 0.24 tolerated(0.51) benign(0) TCGA-VQ-AA64-01 5 175956306 175956306 C A RNF44 Missense_Mutation p.V407F 0.30 deleterious(0) probably_damaging(0.983) TCGA-VQ-AA64-01 5 180041131 180041137 CCTTGTC - FLT4 Frame_Shift_Del p.D1088Cfs*39 0.12 TCGA-VQ-AA64-01 5 26881474 26881474 T C CDH9 Missense_Mutation p.D714G 0.14 tolerated(0.13) benign(0.19) TCGA-VQ-AA64-01 5 2749119 2749119 C A IRX2 Nonsense_Mutation p.E235* 0.44 TCGA-VQ-AA64-01 5 36986275 36986275 G C NIPBL Missense_Mutation p.G998A 0.21 tolerated_low_confidence(0.32) benign(0.391) TCGA-VQ-AA64-01 5 43280561 43280561 C T NIM1K Silent p.T347T 0.33 TCGA-VQ-AA64-01 5 52096369 52096372 ACAG - PELO Frame_Shift_Del p.T49Sfs*102 0.44 TCGA-VQ-AA64-01 5 5232488 5232488 G A ADAMTS16 Missense_Mutation p.R570Q 0.48 deleterious(0.01) probably_damaging(0.987) TCGA-VQ-AA64-01 5 79030783 79030783 C G CMYA5 Missense_Mutation p.I2065M 0.26 benign(0.243) TCGA-VQ-AA64-01 5 94204156 94204156 A G MCTP1 Missense_Mutation p.L773P 0.25 deleterious(0) probably_damaging(0.99) TCGA-VQ-AA64-01 5 94288955 94288955 C A MCTP1 Missense_Mutation p.V317F 0.21 deleterious(0) possibly_damaging(0.836) TCGA-VQ-AA64-01 6 107232051 107232051 T C MIR587 RNA 0.40 TCGA-VQ-AA64-01 6 131910675 131910679 TAATT - MED23 Frame_Shift_Del p.N1289Hfs*6 0.61 TCGA-VQ-AA64-01 6 135317944 135317944 G A HBS1L Silent p.V312V 0.25 TCGA-VQ-AA64-01 6 154533918 154533918 G C IPCEF1 Missense_Mutation p.Q175E 0.28 tolerated(0.81) benign(0.003) TCGA-VQ-AA64-01 6 158074646 158074646 C T ZDHHC14 Missense_Mutation p.S352L 0.40 tolerated(0.27) benign(0.004) TCGA-VQ-AA64-01 6 160328010 160328010 C A MAS1 Nonsense_Mutation p.S8* 0.28 TCGA-VQ-AA64-01 6 160905150 160905150 C T LPAL2 RNA 0.23 TCGA-VQ-AA64-01 6 167708186 167708186 G T UNC93A Missense_Mutation p.W90L 0.27 deleterious(0.01) probably_damaging(0.98) TCGA-VQ-AA64-01 6 26123694 26123694 C A HIST1H2BC Intron 0.61 TCGA-VQ-AA64-01 6 28327639 28327639 G T ZKSCAN3 Missense_Mutation p.E92D 0.23 deleterious(0) probably_damaging(0.999) TCGA-VQ-AA64-01 6 29574902 29574902 C G GABBR1 Missense_Mutation p.E696Q 0.37 tolerated(0.11) possibly_damaging(0.762) TCGA-VQ-AA64-01 6 31929356 31929356 C T SKIV2L Silent p.A274A 0.72 TCGA-VQ-AA64-01 6 38029470 38029470 T A ZFAND3 Missense_Mutation p.S72T 0.55 tolerated(0.55) benign(0.03) TCGA-VQ-AA64-01 6 39073152 39073152 G C SAYSD1 3'UTR 0.38 TCGA-VQ-AA64-01 6 42016477 42016477 G T TAF8 5'Flank 0.65 TCGA-VQ-AA64-01 6 46988486 46988486 C A GPR110 Missense_Mutation p.V198F 0.38 deleterious(0) probably_damaging(0.938) TCGA-VQ-AA64-01 6 56469456 56469456 C G DST Intron 0.30 TCGA-VQ-AA64-01 6 56472510 56472510 C A DST Intron 0.18 TCGA-VQ-AA64-01 6 56472570 56472570 C A DST Intron 0.23 TCGA-VQ-AA64-01 6 64422120 64422120 G - PHF3 Frame_Shift_Del p.S1547Pfs*9 0.15 TCGA-VQ-AA64-01 6 69349266 69349266 G A BAI3 Silent p.E233E 0.17 TCGA-VQ-AA64-01 6 73815014 73815014 C A KCNQ5 Missense_Mutation p.T318N 0.31 deleterious(0.01) probably_damaging(0.992) TCGA-VQ-AA64-01 6 76602399 76602399 G T MYO6 Silent p.A1033A 0.22 TCGA-VQ-AA64-01 7 100373339 100373339 G A ZAN Missense_Mutation p.V2025I 0.19 unknown(0) TCGA-VQ-AA64-01 7 1008978 1008978 C G COX19 3'UTR 0.25 TCGA-VQ-AA64-01 7 101926374 101926374 T G SH2B2 5'Flank 0.31 TCGA-VQ-AA64-01 7 107323652 107323652 G T SLC26A4 Silent p.L257L 0.25 TCGA-VQ-AA64-01 7 134252926 134252926 T G AKR1B15 Missense_Mutation p.V56G 0.38 deleterious(0.01) probably_damaging(0.997) TCGA-VQ-AA64-01 7 138978673 138978673 G T UBN2 Missense_Mutation p.A1314S 0.11 tolerated_low_confidence(0.19) benign(0.123) TCGA-VQ-AA64-01 7 143141469 143141469 G A TAS2R60 Silent p.K308K 0.37 TCGA-VQ-AA64-01 7 16505353 16505353 A C SOSTDC1 5'UTR 0.20 TCGA-VQ-AA64-01 7 21646303 21646303 T A DNAH11 Nonsense_Mutation p.Y1268* 0.35 TCGA-VQ-AA64-01 7 4007035 4007036 GG T SDK1 Frame_Shift_Del p.A506Lfs*57 0.25 TCGA-VQ-AA64-01 7 4796712 4796712 C T FOXK1 Nonsense_Mutation p.R380* 0.13 TCGA-VQ-AA64-01 7 56022885 56022885 G C MRPS17 3'UTR 0.31 TCGA-VQ-AA64-01 7 5920515 5920515 T G OCM 5'UTR 0.19 TCGA-VQ-AA64-01 7 63797310 63797310 G C ZNF736 Missense_Mutation p.R59T 0.50 tolerated(0.11) benign(0.397) TCGA-VQ-AA64-01 7 99661532 99661532 G T ZSCAN21 Missense_Mutation p.E238D 0.45 tolerated(0.22) benign(0.006) TCGA-VQ-AA64-01 7 99691692 99691692 G A MCM7 Intron 0.21 TCGA-VQ-AA64-01 8 10469415 10469415 G T RP1L1 Missense_Mutation p.D731E 0.11 benign(0.13) TCGA-VQ-AA64-01 8 105509516 105509516 G C LRP12 Missense_Mutation p.R422G 0.29 tolerated(0.61) probably_damaging(0.987) TCGA-VQ-AA64-01 8 105509517 105509517 G T LRP12 Silent p.S421S 0.30 TCGA-VQ-AA64-01 8 110984844 110984844 A C KCNV1 Missense_Mutation p.F212V 0.19 tolerated(0.68) benign(0.012) TCGA-VQ-AA64-01 8 118170071 118170071 C T SLC30A8 Missense_Mutation p.A187V 0.40 tolerated(1) benign(0.004) TCGA-VQ-AA64-01 8 120428807 120428807 G T NOV Missense_Mutation p.R12L 0.10 tolerated_low_confidence(0.19) benign(0.022) TCGA-VQ-AA64-01 8 126448701 126448703 CTT - TRIB1 In_Frame_Del p.F371del 0.27 TCGA-VQ-AA64-01 8 126448716 126448716 C T TRIB1 3'UTR 0.15 TCGA-VQ-AA64-01 8 143927988 143927988 G T GML Missense_Mutation p.R120M 0.22 deleterious(0) probably_damaging(0.971) TCGA-VQ-AA64-01 8 145541976 145541976 G C DGAT1 Silent p.L208L 0.19 TCGA-VQ-AA64-01 8 25276964 25276964 C G GNRH1 Missense_Mutation p.E84Q 0.37 deleterious(0.01) possibly_damaging(0.848) TCGA-VQ-AA64-01 8 27472234 27472236 GGC - CLU 5'UTR 0.31 TCGA-VQ-AA64-01 8 35631869 35631869 C T UNC5D Missense_Mutation p.A844V 0.19 deleterious(0.03) benign(0.002) TCGA-VQ-AA64-01 8 77768377 77768377 C T ZFHX4 Silent p.L3074L 0.39 TCGA-VQ-AA64-01 9 101065630 101065630 C G GABBR2 Missense_Mutation p.E769Q 0.08 tolerated(0.14) benign(0.143) TCGA-VQ-AA64-01 9 139118635 139118635 G C QSOX2 Missense_Mutation p.F138L 0.34 tolerated(0.24) benign(0.044) TCGA-VQ-AA64-01 9 14824960 14824960 C A FREM1 Missense_Mutation p.D638Y 0.27 deleterious(0) probably_damaging(0.986) TCGA-VQ-AA64-01 9 21971113 21971113 A T CDKN2A Missense_Mutation p.V82E 0.40 deleterious(0) probably_damaging(0.947) TCGA-VQ-AA64-01 9 26995660 26995660 T C LRRC19 Silent p.P324P 0.46 TCGA-VQ-AA64-01 9 34657512 34657512 C T IL11RA Missense_Mutation p.R192W 0.26 deleterious(0) probably_damaging(0.988) TCGA-VQ-AA64-01 9 35450009 35450009 T G ATP8B5P RNA 0.27 TCGA-VQ-AA64-01 9 35546690 35546690 G C RUSC2 Missense_Mutation p.D58H 0.29 deleterious(0) probably_damaging(0.914) TCGA-VQ-AA64-01 9 82191079 82191079 A T TLE4 Missense_Mutation p.E80V 0.18 deleterious(0.01) probably_damaging(1) TCGA-VQ-AA64-01 9 84226723 84226723 G A TLE1 Silent p.A405A 0.22 TCGA-VQ-AA64-01 X 111019600 111019600 C T TRPC5 Missense_Mutation p.D955N 0.61 deleterious_low_confidence(0.02) probably_damaging(0.956) TCGA-VQ-AA64-01 X 134709086 134709086 G C DDX26B Missense_Mutation p.E570Q 0.55 deleterious(0) probably_damaging(0.954) TCGA-VQ-AA64-01 X 153228680 153228680 A G HCFC1 Silent p.D236D 0.57 TCGA-VQ-AA64-01 X 24580207 24580207 A T PCYT1B 3'UTR 0.42 TCGA-VQ-AA64-01 X 38664502 38664502 C G MID1IP1 Missense_Mutation p.I101M 0.44 tolerated(0.16) probably_damaging(0.914) TCGA-VQ-AA64-01 X 40506775 40506775 C G CXorf38 5'UTR 0.14 TCGA-VQ-AA64-01 X 67652722 67652722 G A OPHN1 Silent p.I47I 0.33 TCGA-VQ-AA64-01 X 70443566 70443566 G C GJB1 Missense_Mutation p.W3C 0.34 deleterious(0) probably_damaging(0.997) TCGA-VQ-AA64-01 X 72433489 72433502 GCCAGGATCTGAAA - NAP1L2 Frame_Shift_Del p.L276Rfs*15 0.46 TCGA-VQ-AA64-01 X 73063132 73063132 T A XIST RNA 0.58 TCGA-VQ-AA68-01 10 118315516 118315516 T C PNLIP Silent p.T272T 0.44 TCGA-VQ-AA68-01 10 124600760 124600760 T A CUZD1 Missense_Mutation p.E56V 0.20 deleterious(0.01) probably_damaging(0.97) TCGA-VQ-AA68-01 10 128147775 128147775 T G C10orf90 Missense_Mutation p.E577D 0.10 deleterious(0.01) probably_damaging(0.997) TCGA-VQ-AA68-01 10 27702478 27702478 G A PTCHD3 Silent p.G234G 0.16 TCGA-VQ-AA68-01 10 48390366 48390366 T C RBP3 Missense_Mutation p.H171R 0.42 deleterious(0.02) possibly_damaging(0.896) TCGA-VQ-AA68-01 10 50819868 50819868 C T SLC18A3 Missense_Mutation p.A361V 0.15 deleterious(0.03) possibly_damaging(0.899) TCGA-VQ-AA68-01 10 70641846 70641846 G A STOX1 Missense_Mutation p.R148H 0.16 tolerated(1) benign(0) TCGA-VQ-AA68-01 11 110450334 110450334 A G ARHGAP20 Silent p.S1112S 0.38 TCGA-VQ-AA68-01 11 120996062 120996062 A C TECTA Missense_Mutation p.K419Q 0.36 tolerated(0.33) possibly_damaging(0.83) TCGA-VQ-AA68-01 11 121038811 121038811 G A TECTA Missense_Mutation p.A1879T 0.28 tolerated(0.13) possibly_damaging(0.645) TCGA-VQ-AA68-01 11 121986690 121986690 A C BLID 5'UTR 0.31 TCGA-VQ-AA68-01 11 123909395 123909395 A T OR10G7 Missense_Mutation p.F105Y 0.27 deleterious(0) benign(0.397) TCGA-VQ-AA68-01 11 124189450 124189450 A C OR8D2 Missense_Mutation p.L215R 0.36 deleterious(0) possibly_damaging(0.828) TCGA-VQ-AA68-01 11 132290097 132290097 A C OPCML Missense_Mutation p.I343S 0.23 deleterious(0) benign(0.084) TCGA-VQ-AA68-01 11 30925141 30925141 A G DCDC1 Silent p.R1466R 0.35 TCGA-VQ-AA68-01 11 3697576 3697576 C T NUP98 Missense_Mutation p.R1739H 0.41 deleterious(0) probably_damaging(0.998) TCGA-VQ-AA68-01 11 49974656 49974656 T C OR4C13 Silent p.L228L 0.55 TCGA-VQ-AA68-01 11 51412296 51412296 A T OR4A5 Missense_Mutation p.L34M 0.52 tolerated_low_confidence(0.07) benign(0.017) TCGA-VQ-AA68-01 11 55432955 55432955 T G OR4C6 Missense_Mutation p.F105V 0.33 deleterious_low_confidence(0) possibly_damaging(0.792) TCGA-VQ-AA68-01 11 55606361 55606361 T C OR5D16 Missense_Mutation p.L45P 0.34 deleterious(0) benign(0.062) TCGA-VQ-AA68-01 11 55653460 55653460 T G TRIM51 Intron 0.35 TCGA-VQ-AA68-01 11 56020106 56020106 T C OR5T3 Missense_Mutation p.L144P 0.28 deleterious(0) probably_damaging(0.986) TCGA-VQ-AA68-01 11 56237478 56237478 A G OR5M3 Missense_Mutation p.F166L 0.37 deleterious(0.01) probably_damaging(0.994) TCGA-VQ-AA68-01 11 59189711 59189711 A G OR5A2 Missense_Mutation p.F239S 0.19 deleterious(0) probably_damaging(0.994) TCGA-VQ-AA68-01 11 65003988 65003988 G T SLC22A20 Intron 0.19 TCGA-VQ-AA68-01 11 67200122 67200122 C T RPS6KB2 Missense_Mutation p.T170M 0.33 deleterious(0.05) possibly_damaging(0.658) TCGA-VQ-AA68-01 11 69462817 69462817 C T CCND1 Silent p.A210A 0.05 TCGA-VQ-AA68-01 12 20885947 20885947 T A SLCO1C1 Missense_Mutation p.S431T 0.54 tolerated(1) benign(0.023) TCGA-VQ-AA68-01 12 33579326 33579326 T C SYT10 Missense_Mutation p.S86G 0.18 tolerated(0.07) benign(0.051) TCGA-VQ-AA68-01 12 78400825 78400825 G T NAV3 Missense_Mutation p.A503S 0.51 tolerated(0.09) probably_damaging(0.998) TCGA-VQ-AA68-01 12 85450185 85450185 A T LRRIQ1 Missense_Mutation p.E538D 0.52 tolerated(0.14) benign(0.015) TCGA-VQ-AA68-01 12 8693484 8693484 G C CLEC4E 5'UTR 0.54 TCGA-VQ-AA68-01 12 8906500 8906500 T G RIMKLB Missense_Mutation p.L170V 0.43 deleterious(0.01) probably_damaging(0.994) TCGA-VQ-AA68-01 12 91357958 91357958 C T EPYC Missense_Mutation p.R315H 0.14 deleterious(0.03) probably_damaging(0.972) TCGA-VQ-AA68-01 13 102368017 102368017 A G ITGBL1 3'UTR 0.34 TCGA-VQ-AA68-01 13 108882229 108882230 - A ABHD13 Frame_Shift_Ins p.I222Nfs*25 0.20 TCGA-VQ-AA68-01 13 23911800 23911800 A C SACS Missense_Mutation p.L2072R 0.50 possibly_damaging(0.822) TCGA-VQ-AA68-01 13 25670814 25670814 G A PABPC3 Missense_Mutation p.G160R 0.11 deleterious(0) probably_damaging(0.998) TCGA-VQ-AA68-01 13 31848664 31848664 G A B3GALTL Missense_Mutation p.D227N 0.18 tolerated(0.25) benign(0.08) TCGA-VQ-AA68-01 13 77752028 77752028 C T MYCBP2 Missense_Mutation p.S1694N 0.36 probably_damaging(0.973) TCGA-VQ-AA68-01 13 88329567 88329567 C T SLITRK5 Missense_Mutation p.R642W 0.20 deleterious(0.03) possibly_damaging(0.586) TCGA-VQ-AA68-01 14 105408382 105408382 T C AHNAK2 Missense_Mutation p.K4469R 0.72 probably_damaging(0.969) TCGA-VQ-AA68-01 14 42356853 42356853 T G LRFN5 Missense_Mutation p.L342R 0.58 deleterious(0.02) probably_damaging(1) TCGA-VQ-AA68-01 14 75052623 75052623 C A LTBP2 Missense_Mutation p.G255V 0.75 tolerated(0.36) benign(0.005) TCGA-VQ-AA68-01 15 42145795 42145795 C T SPTBN5 Missense_Mutation p.R3322H 0.46 benign(0.021) TCGA-VQ-AA68-01 15 79382858 79382858 G A RASGRF1 5'UTR 0.19 TCGA-VQ-AA68-01 16 1552759 1552759 C T TELO2 Silent p.A589A 0.54 TCGA-VQ-AA68-01 16 20347989 20347989 A G UMOD Silent p.L601L 0.44 TCGA-VQ-AA68-01 16 20497976 20497976 G T ACSM2A Missense_Mutation p.M570I 0.48 tolerated(0.18) benign(0.053) TCGA-VQ-AA68-01 16 3166477 3166477 G A ZNF205 Nonsense_Mutation p.W138* 0.42 TCGA-VQ-AA68-01 16 49315190 49315190 C A CBLN1 Missense_Mutation p.A63S 0.54 deleterious(0) possibly_damaging(0.903) TCGA-VQ-AA68-01 16 50707965 50707965 G A SNX20 Silent p.I101I 0.14 TCGA-VQ-AA68-01 16 5128777 5128777 G C ALG1 Missense_Mutation p.V254L 0.09 tolerated(0.41) benign(0.011) TCGA-VQ-AA68-01 16 55690523 55690523 G A SLC6A2 5'Flank 0.42 TCGA-VQ-AA68-01 16 61891134 61891134 C A CDH8 Missense_Mutation p.V186F 0.55 deleterious(0) probably_damaging(0.998) TCGA-VQ-AA68-01 17 32690196 32690196 T G CCL1 5'UTR 0.33 TCGA-VQ-AA68-01 17 41720984 41720984 G A MEOX1 Missense_Mutation p.R172C 0.35 deleterious(0.03) probably_damaging(1) TCGA-VQ-AA68-01 17 43531125 43531125 C T PLEKHM1 Nonsense_Mutation p.W698* 0.30 TCGA-VQ-AA68-01 17 56274354 56274354 C T EPX Missense_Mutation p.R286C 0.38 deleterious(0.02) possibly_damaging(0.889) TCGA-VQ-AA68-01 17 7578179 7578179 C A TP53 Nonsense_Mutation p.E224* 0.50 TCGA-VQ-AA68-01 18 22806441 22806441 A C ZNF521 Missense_Mutation p.F481V 0.33 deleterious(0.01) possibly_damaging(0.767) TCGA-VQ-AA68-01 18 25543430 25543430 T G CDH2 Missense_Mutation p.K802T 0.32 deleterious(0) probably_damaging(0.968) TCGA-VQ-AA68-01 18 48335734 48335734 G A MRO Intron 0.41 TCGA-VQ-AA68-01 18 55342086 55342086 C T ATP8B1 Missense_Mutation p.R600Q 0.39 deleterious(0) probably_damaging(0.999) TCGA-VQ-AA68-01 18 6980576 6980576 A T LAMA1 Missense_Mutation p.V1984D 0.36 tolerated(0.82) benign(0.001) TCGA-VQ-AA68-01 18 6983195 6983195 G T LAMA1 Missense_Mutation p.T1900N 0.44 deleterious(0) possibly_damaging(0.77) TCGA-VQ-AA68-01 19 15989600 15989600 C T CYP4F2 Missense_Mutation p.R515Q 0.37 tolerated(0.37) benign(0.127) TCGA-VQ-AA68-01 19 41889480 41889480 G T TMEM91 Intron 0.56 TCGA-VQ-AA68-01 19 52887776 52887776 C G ZNF880 Missense_Mutation p.Q315E 0.43 tolerated(0.12) benign(0.034) TCGA-VQ-AA68-01 19 861719 861719 G A CFD Silent p.L126L 0.29 TCGA-VQ-AA68-01 1 104114214 104114214 T G AMY2B 5'UTR 0.17 TCGA-VQ-AA68-01 1 152327441 152327441 T C FLG2 Missense_Mutation p.S941G 0.28 unknown(0) TCGA-VQ-AA68-01 1 155180356 155180356 C G MTX1 Missense_Mutation p.R206G 0.24 deleterious(0) benign(0.089) TCGA-VQ-AA68-01 1 156235926 156235926 G A SMG5 Missense_Mutation p.L501F 0.27 tolerated(0.08) benign(0.328) TCGA-VQ-AA68-01 1 156641693 156641693 G A NES Nonsense_Mutation p.Q763* 0.42 TCGA-VQ-AA68-01 1 157667491 157667491 C G FCRL3 Missense_Mutation p.D173H 0.32 tolerated(0.14) benign(0.009) TCGA-VQ-AA68-01 1 157739752 157739752 C T FCRL2 Missense_Mutation p.V167M 0.28 tolerated(1) benign(0.027) TCGA-VQ-AA68-01 1 158262439 158262439 T A CD1C Missense_Mutation p.L222M 0.15 tolerated(0.23) possibly_damaging(0.473) TCGA-VQ-AA68-01 1 158549119 158549119 T C OR10X1 Missense_Mutation p.K191E 0.26 tolerated(0.95) benign(0.052) TCGA-VQ-AA68-01 1 158581131 158581132 AT G SPTA1 Frame_Shift_Del p.Q2394Hfs*38 0.12 TCGA-VQ-AA68-01 1 158605722 158605722 T C SPTA1 Missense_Mutation p.K1805E 0.21 tolerated(0.05) possibly_damaging(0.538) TCGA-VQ-AA68-01 1 158622318 158622318 T G SPTA1 Missense_Mutation p.N1105T 0.19 tolerated(0.18) probably_damaging(0.954) TCGA-VQ-AA68-01 1 158626443 158626443 G A SPTA1 Missense_Mutation p.L937F 0.07 deleterious(0) probably_damaging(1) TCGA-VQ-AA68-01 1 158646076 158646076 A C SPTA1 Missense_Mutation p.L323V 0.20 tolerated(0.12) possibly_damaging(0.859) TCGA-VQ-AA68-01 1 159277546 159277546 G C FCER1A Missense_Mutation p.E200Q 0.14 tolerated(0.11) benign(0.04) TCGA-VQ-AA68-01 1 15987110 15987110 G A RSC1A1 Missense_Mutation p.M249I 0.08 deleterious(0) probably_damaging(0.999) TCGA-VQ-AA68-01 1 159888557 159888557 C T TAGLN2 3'UTR 0.07 TCGA-VQ-AA68-01 1 181706751 181706751 G A CACNA1E Silent p.A1171A 0.35 TCGA-VQ-AA68-01 1 19634680 19634680 T C AKR7A2 Missense_Mutation p.N188S 0.08 deleterious(0.01) benign(0.028) TCGA-VQ-AA68-01 1 196694302 196694302 A G CFH Missense_Mutation p.K583R 0.29 tolerated(0.34) benign(0.01) TCGA-VQ-AA68-01 1 196697511 196697511 T G CFH Missense_Mutation p.L758V 0.27 tolerated(1) benign(0.011) TCGA-VQ-AA68-01 1 228475782 228475782 G A OBSCN Missense_Mutation p.G3707R 0.38 benign(0.062) TCGA-VQ-AA68-01 1 228482035 228482035 C T OBSCN Missense_Mutation p.R4201C 0.27 probably_damaging(0.985) TCGA-VQ-AA68-01 1 238051750 238051750 C T ZP4 Missense_Mutation p.C154Y 0.44 deleterious(0.04) probably_damaging(0.986) TCGA-VQ-AA68-01 1 240519138 240519138 A C FMN2 Missense_Mutation p.K1596N 0.19 possibly_damaging(0.667) TCGA-VQ-AA68-01 1 248224684 248224684 A G OR2L3 Missense_Mutation p.K234R 0.23 tolerated(0.25) benign(0.118) TCGA-VQ-AA68-01 1 248309359 248309359 G C OR2M5 Missense_Mutation p.V304L 0.05 tolerated(0.45) benign(0.004) TCGA-VQ-AA68-01 1 26380447 26380447 C A TRIM63 Nonsense_Mutation p.E330* 0.35 TCGA-VQ-AA68-01 1 33099290 33099290 C T ZBTB8OS Missense_Mutation p.E107K 0.07 deleterious(0) probably_damaging(0.931) TCGA-VQ-AA68-01 1 45810593 45810593 T G TESK2 Missense_Mutation p.E545D 0.18 deleterious_low_confidence(0.01) benign(0.006) TCGA-VQ-AA68-01 1 53681696 53681696 C T C1orf123 Silent p.G124G 0.40 TCGA-VQ-AA68-01 1 57476821 57476821 T G DAB1 Missense_Mutation p.E523D 0.30 tolerated(1) benign(0.018) TCGA-VQ-AA68-01 20 1424434 1424434 G A NSFL1C Missense_Mutation p.A360V 0.16 deleterious(0) probably_damaging(0.964) TCGA-VQ-AA68-01 20 17434462 17434462 G A PCSK2 Missense_Mutation p.G321S 0.10 deleterious(0) probably_damaging(1) TCGA-VQ-AA68-01 20 21687082 21687082 C T PAX1 Missense_Mutation p.T98M 0.47 deleterious(0) probably_damaging(0.993) TCGA-VQ-AA68-01 20 34287591 34287591 C A ROMO1 Missense_Mutation p.P13T 0.11 deleterious(0) probably_damaging(0.999) TCGA-VQ-AA68-01 20 37464644 37464644 G T PPP1R16B Missense_Mutation p.A26S 0.38 deleterious(0) probably_damaging(0.999) TCGA-VQ-AA68-01 21 10944689 10944689 T G TPTE Missense_Mutation p.K182T 0.28 tolerated(0.51) benign(0.038) TCGA-VQ-AA68-01 22 36892207 36892207 C G FOXRED2 Silent p.L477L 0.38 TCGA-VQ-AA68-01 22 38202070 38202070 C T H1F0 Silent p.P173P 0.39 TCGA-VQ-AA68-01 2 11802129 11802129 G A NTSR2 Missense_Mutation p.R288W 0.16 deleterious(0) possibly_damaging(0.787) TCGA-VQ-AA68-01 2 153485043 153485043 C T FMNL2 Missense_Mutation p.T799I 0.55 possibly_damaging(0.702) TCGA-VQ-AA68-01 2 179446923 179446923 C A TTN Missense_Mutation p.R22058L 0.49 TCGA-VQ-AA68-01 2 179574566 179574566 T G TTN Missense_Mutation p.S9494R 0.55 TCGA-VQ-AA68-01 2 191535168 191535168 T C NAB1 Silent p.Y312Y 0.21 TCGA-VQ-AA68-01 2 197184233 197184233 G T HECW2 Missense_Mutation p.L461I 0.54 deleterious_low_confidence(0.01) probably_damaging(0.991) TCGA-VQ-AA68-01 2 209358371 209358371 A G PTH2R Missense_Mutation p.E547G 0.09 deleterious(0) benign(0.357) TCGA-VQ-AA68-01 2 212426722 212426722 A T ERBB4 Missense_Mutation p.L798H 0.55 deleterious(0) probably_damaging(0.998) TCGA-VQ-AA68-01 2 21247841 21247841 C G APOB Silent p.L800L 0.11 TCGA-VQ-AA68-01 2 62373600 62373600 T C AC018462.2 RNA 0.58 TCGA-VQ-AA68-01 2 72606947 72606947 G A EXOC6B Missense_Mutation p.S678F 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-VQ-AA68-01 2 74743243 74743243 C T TLX2 Missense_Mutation p.A261V 0.41 deleterious(0) probably_damaging(0.999) TCGA-VQ-AA68-01 2 75094786 75094786 G T HK2 Missense_Mutation p.D84Y 0.45 deleterious(0) probably_damaging(1) TCGA-VQ-AA68-01 2 77746328 77746328 C A LRRTM4 Missense_Mutation p.A223S 0.20 tolerated(0.21) benign(0.114) TCGA-VQ-AA68-01 2 88402652 88402652 G T SMYD1 Nonsense_Mutation p.E322* 0.38 TCGA-VQ-AA68-01 2 96963445 96963445 C T SNRNP200 Missense_Mutation p.R378Q 0.44 tolerated(0.58) benign(0.154) TCGA-VQ-AA68-01 3 100373805 100373805 C T GPR128 Silent p.D502D 0.32 TCGA-VQ-AA68-01 3 133614294 133614294 T G RAB6B Missense_Mutation p.D6A 0.28 tolerated_low_confidence(0.05) benign(0.089) TCGA-VQ-AA68-01 3 134670841 134670841 G C EPHB1 Missense_Mutation p.G251A 0.31 deleterious(0) probably_damaging(0.94) TCGA-VQ-AA68-01 3 150916139 150916139 T A GPR171 3'UTR 0.11 TCGA-VQ-AA68-01 3 164908198 164908198 T C SLITRK3 Missense_Mutation p.R141G 0.38 deleterious(0) possibly_damaging(0.905) TCGA-VQ-AA68-01 3 167542343 167542343 G A SERPINI1 Silent p.R383R 0.36 TCGA-VQ-AA68-01 3 169847094 169847095 CT - PHC3 Frame_Shift_Del p.H390Sfs*9 0.30 TCGA-VQ-AA68-01 3 179118990 179118990 G T GNB4 3'UTR 0.13 TCGA-VQ-AA68-01 3 179483492 179483492 C G USP13 Missense_Mutation p.L757V 0.35 tolerated(0.36) probably_damaging(0.999) TCGA-VQ-AA68-01 3 194117349 194117349 T C GP5 Missense_Mutation p.R555G 0.33 deleterious(0) possibly_damaging(0.544) TCGA-VQ-AA68-01 3 38793876 38793876 T G SCN10A Missense_Mutation p.H530P 0.20 tolerated(0.16) benign(0.032) TCGA-VQ-AA68-01 3 42732382 42732382 C T KLHL40 Missense_Mutation p.R547C 0.35 deleterious(0) probably_damaging(1) TCGA-VQ-AA68-01 3 4687308 4687308 C G ITPR1 Missense_Mutation p.L251V 0.11 deleterious(0) probably_damaging(0.997) TCGA-VQ-AA68-01 3 47046996 47046996 G A NBEAL2 Missense_Mutation p.R2193Q 0.54 deleterious(0) probably_damaging(0.999) TCGA-VQ-AA68-01 3 56658618 56658618 T C FAM208A Missense_Mutation p.T1458A 0.32 tolerated(0.26) benign(0.004) TCGA-VQ-AA68-01 3 66430783 66430783 G A LRIG1 Silent p.L1062L 0.09 TCGA-VQ-AA68-01 4 1018200 1018200 G A FGFRL1 Missense_Mutation p.V274M 0.15 tolerated(0.06) probably_damaging(0.969) TCGA-VQ-AA68-01 4 145061796 145061796 T A GYPA 5'UTR 0.30 TCGA-VQ-AA68-01 4 147561669 147561669 C T POU4F2 Silent p.I313I 0.14 TCGA-VQ-AA68-01 4 154649359 154649359 C T RNF175 Missense_Mutation p.R134Q 0.20 tolerated(0.15) benign(0.012) TCGA-VQ-AA68-01 4 156294592 156294592 A C MAP9 Missense_Mutation p.F59L 0.30 tolerated(0.11) benign(0.027) TCGA-VQ-AA68-01 4 187542425 187542425 C A FAT1 Missense_Mutation p.G1772V 0.14 probably_damaging(0.999) TCGA-VQ-AA68-01 4 36162078 36162078 T A ARAP2 Intron 0.11 TCGA-VQ-AA68-01 4 42119644 42119644 G A BEND4 Missense_Mutation p.A499V 0.48 deleterious_low_confidence(0) probably_damaging(0.939) TCGA-VQ-AA68-01 5 140222589 140222589 C T PCDHA8 Silent p.N561N 0.10 TCGA-VQ-AA68-01 5 140257255 140257255 C T PCDHA12 Missense_Mutation p.A733V 0.56 tolerated_low_confidence(0.06) benign(0.004) TCGA-VQ-AA68-01 5 140753678 140753678 C T PCDHGA6 Missense_Mutation p.R10C 0.44 tolerated_low_confidence(0.28) benign(0.005) TCGA-VQ-AA68-01 5 3599457 3599457 A C IRX1 Missense_Mutation p.K132T 0.65 deleterious(0) probably_damaging(0.932) TCGA-VQ-AA68-01 5 68473354 68473354 G A CCNB1 Missense_Mutation p.V400I 0.45 tolerated(1) benign(0.002) TCGA-VQ-AA68-01 5 75913538 75913538 T G F2RL2 Missense_Mutation p.N332H 0.41 tolerated(0.14) benign(0.017) TCGA-VQ-AA68-01 6 109175507 109175507 G T ARMC2 Missense_Mutation p.D13Y 0.21 deleterious(0) possibly_damaging(0.819) TCGA-VQ-AA68-01 6 152485334 152485334 G C SYNE1 Missense_Mutation p.N7918K 0.08 benign(0.016) TCGA-VQ-AA68-01 6 152716743 152716743 C T SYNE1 Silent p.T2540T 0.40 TCGA-VQ-AA68-01 6 153073408 153073408 T G VIP Silent p.P32P 0.53 TCGA-VQ-AA68-01 6 153076490 153076490 T G VIP Missense_Mutation p.L106R 0.65 deleterious(0) probably_damaging(0.922) TCGA-VQ-AA68-01 6 157502244 157502244 G C ARID1B Missense_Mutation p.V1093L 0.41 probably_damaging(0.995) TCGA-VQ-AA68-01 6 165715541 165715541 G A C6orf118 Silent p.R90R 0.57 TCGA-VQ-AA68-01 6 25726540 25726540 G A HIST1H2AA Silent p.R72R 0.30 TCGA-VQ-AA68-01 6 29080314 29080314 T C OR2J3 Missense_Mutation p.L216P 0.37 deleterious(0) probably_damaging(0.978) TCGA-VQ-AA68-01 6 3105719 3105719 C T RIPK1 Missense_Mutation p.T337I 0.26 tolerated(0.24) benign(0.006) TCGA-VQ-AA68-01 6 31852241 31852241 G A EHMT2 Missense_Mutation p.A900V 0.27 deleterious(0.02) possibly_damaging(0.837) TCGA-VQ-AA68-01 6 51799044 51799045 CT - PKHD1 Frame_Shift_Del p.E1995Afs*57 0.26 TCGA-VQ-AA68-01 6 69653787 69653787 A C BAI3 Silent p.R366R 0.48 TCGA-VQ-AA68-01 6 90337309 90337309 T - ANKRD6 Frame_Shift_Del p.L461Wfs*4 0.46 TCGA-VQ-AA68-01 7 100675650 100675650 C T MUC17 Missense_Mutation p.T318M 0.57 benign(0.035) TCGA-VQ-AA68-01 7 106545900 106545900 T C PIK3CG 3'UTR 0.58 TCGA-VQ-AA68-01 7 140476756 140476756 C T BRAF Missense_Mutation p.M550I 0.58 tolerated(0.09) benign(0.11) TCGA-VQ-AA68-01 7 4841615 4841615 G A RADIL Silent p.H837H 0.57 TCGA-VQ-AA68-01 7 48619827 48619827 G A ABCA13 Missense_Mutation p.V4788M 0.41 benign(0.32) TCGA-VQ-AA68-01 7 5540256 5540256 G A FBXL18 Silent p.S548S 0.08 TCGA-VQ-AA68-01 7 55990902 55990902 G A MRPS17 Silent p.E32E 0.48 TCGA-VQ-AA68-01 7 65579837 65579837 G T CRCP 5'UTR 0.64 TCGA-VQ-AA68-01 7 82508700 82508700 T C PCLO Missense_Mutation p.K4536R 0.45 unknown(0) TCGA-VQ-AA68-01 7 87175266 87175266 A C ABCB1 Silent p.G600G 0.59 TCGA-VQ-AA68-01 7 8790740 8790740 T C NXPH1 Silent p.L53L 0.46 TCGA-VQ-AA68-01 8 103293626 103293626 C T UBR5 Missense_Mutation p.D1940N 0.19 deleterious(0) probably_damaging(0.98) TCGA-VQ-AA68-01 8 113348960 113348960 T C CSMD3 Missense_Mutation p.R2314G 0.35 tolerated(0.1) benign(0.012) TCGA-VQ-AA68-01 8 133584563 133584563 C T LRRC6 Silent p.P464P 0.33 TCGA-VQ-AA68-01 8 145003956 145003956 G A PLEC Silent p.H1064H 0.43 TCGA-VQ-AA68-01 8 145638046 145638046 G A SLC39A4 Missense_Mutation p.P607L 0.28 deleterious(0) probably_damaging(0.997) TCGA-VQ-AA68-01 8 15998394 15998394 T C MSR1 Intron 0.58 TCGA-VQ-AA68-01 8 27303311 27303311 G A PTK2B Missense_Mutation p.V739I 0.23 tolerated(0.1) benign(0.256) TCGA-VQ-AA68-01 8 30700097 30700097 T C TEX15 Missense_Mutation p.N2146S 0.49 tolerated(0.8) benign(0.002) TCGA-VQ-AA68-01 8 32505365 32505365 T G NRG1 Intron 0.37 TCGA-VQ-AA68-01 8 3565996 3565996 A C CSMD1 Missense_Mutation p.L317V 0.61 possibly_damaging(0.492) TCGA-VQ-AA68-01 8 68995559 68995559 T G PREX2 Missense_Mutation p.F655V 0.38 tolerated(0.08) benign(0.029) TCGA-VQ-AA68-01 8 71510488 71510488 C A TRAM1 Nonsense_Mutation p.E64* 0.25 TCGA-VQ-AA68-01 8 72975113 72975113 A G TRPA1 Missense_Mutation p.L243P 0.29 deleterious(0) probably_damaging(1) TCGA-VQ-AA68-01 8 90936797 90936797 C T OSGIN2 Silent p.V229V 0.04 TCGA-VQ-AA68-01 9 135804196 135804196 G A TSC1 Missense_Mutation p.R22W 0.08 deleterious(0.02) possibly_damaging(0.766) TCGA-VQ-AA68-01 9 16419500 16419500 G A BNC2 Silent p.L929L 0.22 TCGA-VQ-AA68-01 9 34306348 34306348 G A KIF24 Missense_Mutation p.R239C 0.21 deleterious(0) probably_damaging(0.985) TCGA-VQ-AA68-01 9 36369870 36369870 C G RNF38 Missense_Mutation p.S139T 0.27 tolerated(0.3) benign(0.007) TCGA-VQ-AA68-01 9 43626720 43626720 T G SPATA31A6 Missense_Mutation p.K656T 0.42 tolerated(0.4) benign(0.004) TCGA-VQ-AA68-01 9 77377841 77377841 A C TRPM6 Missense_Mutation p.L1249R 0.14 tolerated(0.09) benign(0.027) TCGA-VQ-AA68-01 X 100807837 100807837 C T ARMCX1 5'UTR 0.38 TCGA-VQ-AA68-01 X 104999223 104999223 T C IL1RAPL2 Silent p.T415T 0.23 TCGA-VQ-AA68-01 X 107936061 107936061 A C COL4A5 Silent p.R1538R 0.31 TCGA-VQ-AA68-01 X 118223518 118223518 G T KIAA1210 Missense_Mutation p.Q559K 0.21 tolerated(0.25) benign(0.078) TCGA-VQ-AA68-01 X 129790658 129790658 G A ENOX2 Silent p.N371N 0.09 TCGA-VQ-AA68-01 X 134856758 134856758 T G CT45A1 Missense_Mutation p.V178G 0.03 deleterious(0) possibly_damaging(0.731) TCGA-VQ-AA68-01 X 148037500 148037500 A G AFF2 Missense_Mutation p.E642G 0.19 tolerated(0.24) benign(0.239) TCGA-VQ-AA68-01 X 16170840 16170840 T G GRPR 3'UTR 0.34 TCGA-VQ-AA68-01 X 51238837 51238837 A G NUDT11 Missense_Mutation p.S154P 0.39 tolerated(0.67) benign(0.002) TCGA-VQ-AA68-01 X 6069403 6069403 C A NLGN4X Missense_Mutation p.K35N 0.43 tolerated(0.31) benign(0.023) TCGA-VQ-AA68-01 X 77913465 77913465 T C ZCCHC5 Silent p.Q151Q 0.38 TCGA-VQ-AA68-01 X 77913661 77913661 T C ZCCHC5 Missense_Mutation p.Q86R 0.33 tolerated_low_confidence(0.13) benign(0.057) TCGA-VQ-AA69-01 10 102265729 102265730 - AT SEC31B Intron 0.29 TCGA-VQ-AA69-01 10 96012129 96012129 C A PLCE1 Silent p.G1051G 0.15 TCGA-VQ-AA69-01 10 99350030 99350030 G A C10orf62 Missense_Mutation p.A126T 0.39 tolerated(0.11) benign(0.171) TCGA-VQ-AA69-01 11 30914543 30914543 G T DCDC1 Missense_Mutation p.A1632E 0.39 tolerated(0.16) possibly_damaging(0.765) TCGA-VQ-AA69-01 11 34182592 34182593 AG - ABTB2 Frame_Shift_Del p.L752Efs*90 0.36 TCGA-VQ-AA69-01 12 109967846 109967846 G A UBE3B Missense_Mutation p.D927N 0.31 deleterious(0) possibly_damaging(0.846) TCGA-VQ-AA69-01 12 121666843 121666845 CTT - P2RX4 In_Frame_Del p.F292del 0.57 TCGA-VQ-AA69-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.84 deleterious(0) possibly_damaging(0.479) TCGA-VQ-AA69-01 12 54385573 54385573 G A RP11-834C11.12 Intron 0.37 TCGA-VQ-AA69-01 12 85450391 85450391 T A LRRIQ1 Missense_Mutation p.I607N 0.32 deleterious(0.01) possibly_damaging(0.736) TCGA-VQ-AA69-01 13 103450844 103450844 C G KDELC1 Silent p.G59G 0.36 TCGA-VQ-AA69-01 13 25672132 25672132 G A PABPC3 Missense_Mutation p.R599H 0.44 tolerated(0.38) benign(0.003) TCGA-VQ-AA69-01 13 53418818 53418818 G A PCDH8 Silent p.V1030V 0.31 TCGA-VQ-AA69-01 14 106311717 106311717 G A IGHD Missense_Mutation p.R99C 0.42 deleterious_low_confidence(0.01) benign(0.319) TCGA-VQ-AA69-01 14 106322271 106322271 G A IGHM Missense_Mutation p.P18L 0.42 tolerated(0.36) benign(0.003) TCGA-VQ-AA69-01 14 36986999 36986999 C T NKX2-1 Silent p.L230L 0.45 TCGA-VQ-AA69-01 16 22926989 22926989 C A HS3ST2 3'UTR 0.44 TCGA-VQ-AA69-01 16 23706584 23706584 G C ERN2 Missense_Mutation p.C627W 0.48 deleterious(0) probably_damaging(1) TCGA-VQ-AA69-01 16 4812305 4812305 C T ZNF500 Silent p.A210A 0.52 TCGA-VQ-AA69-01 16 83933143 83933143 G A MLYCD Missense_Mutation p.A132T 0.50 tolerated(0.18) benign(0.21) TCGA-VQ-AA69-01 17 21207843 21207843 C T MAP2K3 Missense_Mutation p.A225V 0.05 deleterious(0.03) possibly_damaging(0.836) TCGA-VQ-AA69-01 17 32953394 32953394 G A TMEM132E Missense_Mutation p.E106K 0.41 deleterious(0.01) possibly_damaging(0.796) TCGA-VQ-AA69-01 17 33591892 33591892 G A SLFN5 Missense_Mutation p.C610Y 0.41 deleterious(0) probably_damaging(0.989) TCGA-VQ-AA69-01 17 38251768 38251768 C T NR1D1 Missense_Mutation p.V393M 0.49 tolerated(0.27) benign(0.003) TCGA-VQ-AA69-01 17 47486440 47486440 G A PHB Silent p.A158A 0.62 TCGA-VQ-AA69-01 17 72916366 72916366 G A USH1G Missense_Mutation p.R189W 0.23 tolerated(0.05) possibly_damaging(0.902) TCGA-VQ-AA69-01 18 61310748 61310748 A T SERPINB4 Missense_Mutation p.S22T 0.46 tolerated(0.5) benign(0.044) TCGA-VQ-AA69-01 18 6966262 6966262 C T LAMA1 Missense_Mutation p.G2312R 0.38 deleterious(0) probably_damaging(1) TCGA-VQ-AA69-01 19 16860012 16860012 G A NWD1 Missense_Mutation p.V187I 0.34 tolerated(0.51) benign(0.026) TCGA-VQ-AA69-01 19 18499304 18499304 G A GDF15 Silent p.P162P 0.54 TCGA-VQ-AA69-01 19 35250759 35250759 C A ZNF599 Missense_Mutation p.C316F 0.39 deleterious(0) probably_damaging(1) TCGA-VQ-AA69-01 19 56388517 56388517 G A NLRP4 Missense_Mutation p.R894H 0.80 tolerated(1) benign(0.003) TCGA-VQ-AA69-01 19 6897461 6897461 C A EMR1 Missense_Mutation p.S139R 0.32 tolerated(0.5) benign(0.248) TCGA-VQ-AA69-01 19 7755063 7755063 C T FCER2 Missense_Mutation p.G237E 0.88 tolerated(0.39) possibly_damaging(0.664) TCGA-VQ-AA69-01 19 7975017 7975017 A G MAP2K7 Intron 0.69 TCGA-VQ-AA69-01 1 149761682 149761682 G A FCGR1A Missense_Mutation p.S211N 0.53 tolerated(0.13) benign(0.287) TCGA-VQ-AA69-01 1 149882468 149882468 G A SV2A Nonsense_Mutation p.R289* 0.35 TCGA-VQ-AA69-01 1 179873152 179873152 C G TOR1AIP1 Nonsense_Mutation p.S264* 0.40 TCGA-VQ-AA69-01 1 19180734 19180734 G T TAS1R2 Nonsense_Mutation p.C410* 0.37 TCGA-VQ-AA69-01 1 202698251 202698251 G A KDM5B Silent p.V1516V 0.36 TCGA-VQ-AA69-01 1 205069085 205069085 A G RBBP5 Missense_Mutation p.V287A 0.37 deleterious(0) probably_damaging(0.97) TCGA-VQ-AA69-01 1 47366070 47366070 G T CYP4Z2P RNA 0.53 TCGA-VQ-AA69-01 1 65243344 65243344 G A RAVER2 Missense_Mutation p.A119T 0.04 deleterious(0) probably_damaging(0.972) TCGA-VQ-AA69-01 20 4168106 4168106 C T SMOX 3'UTR 0.53 TCGA-VQ-AA69-01 22 17670854 17670854 G A CECR1 Missense_Mutation p.T317M 0.49 deleterious(0.01) possibly_damaging(0.5) TCGA-VQ-AA69-01 22 20780115 20780115 G A SCARF2 Silent p.T721T 0.60 TCGA-VQ-AA69-01 2 10560163 10560163 C T HPCAL1 Missense_Mutation p.R94W 0.39 deleterious(0) possibly_damaging(0.883) TCGA-VQ-AA69-01 2 132010511 132010511 C T POTEE Silent p.I539I 0.12 TCGA-VQ-AA69-01 2 137814539 137814539 T C THSD7B Missense_Mutation p.I230T 0.04 tolerated(0.35) possibly_damaging(0.448) TCGA-VQ-AA69-01 2 168100009 168100009 C A XIRP2 Missense_Mutation p.Q703K 0.44 benign(0.355) TCGA-VQ-AA69-01 2 185803410 185803410 C T ZNF804A Missense_Mutation p.T1096I 0.41 deleterious(0) probably_damaging(0.981) TCGA-VQ-AA69-01 2 207435497 207435497 G A ADAM23 Missense_Mutation p.V510M 0.47 deleterious(0.03) benign(0.36) TCGA-VQ-AA69-01 2 46607546 46607546 C A EPAS1 Missense_Mutation p.P579T 0.07 tolerated(0.19) benign(0.001) TCGA-VQ-AA69-01 2 73161038 73161038 G A EMX1 Silent p.T276T 0.37 TCGA-VQ-AA69-01 3 11058951 11058951 C T SLC6A1 Silent p.S18S 0.43 TCGA-VQ-AA69-01 3 123166565 123166565 G A ADCY5 Silent p.A276A 0.47 TCGA-VQ-AA69-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.48 deleterious(0.02) probably_damaging(0.959) TCGA-VQ-AA69-01 3 184587293 184587293 C T VPS8 Nonsense_Mutation p.R541* 0.32 TCGA-VQ-AA69-01 3 19479762 19479762 G A KCNH8 Silent p.T428T 0.45 TCGA-VQ-AA69-01 3 41266097 41266097 G T CTNNB1 Missense_Mutation p.D32Y 0.54 deleterious(0) probably_damaging(0.992) TCGA-VQ-AA69-01 4 154626364 154626364 G T TLR2 Missense_Mutation p.A769S 0.34 tolerated(0.6) benign(0.046) TCGA-VQ-AA69-01 4 155720111 155720111 G T RBM46 Missense_Mutation p.R266L 0.37 deleterious(0.01) probably_damaging(1) TCGA-VQ-AA69-01 4 16258164 16258164 G A TAPT1-AS1 RNA 0.54 TCGA-VQ-AA69-01 4 5527150 5527150 A G C4orf6 Silent p.E31E 0.48 TCGA-VQ-AA69-01 4 89425457 89425457 G T HERC5 Missense_Mutation p.R886I 0.46 deleterious(0) possibly_damaging(0.851) TCGA-VQ-AA69-01 5 140475968 140475968 C T PCDHB2 Missense_Mutation p.R532C 0.56 deleterious_low_confidence(0.02) benign(0.077) TCGA-VQ-AA69-01 5 140784941 140784941 C A PCDHGA9 Missense_Mutation p.P808T 0.36 deleterious_low_confidence(0.03) benign(0.004) TCGA-VQ-AA69-01 5 150922047 150922047 C T FAT2 Missense_Mutation p.G2881R 0.44 probably_damaging(1) TCGA-VQ-AA69-01 5 153144076 153144076 G A GRIA1 Missense_Mutation p.A646T 0.39 deleterious(0) probably_damaging(1) TCGA-VQ-AA69-01 5 176314265 176314265 G A HK3 Silent p.G558G 0.42 TCGA-VQ-AA69-01 5 54420715 54420715 T C CDC20B Silent p.G377G 0.26 TCGA-VQ-AA69-01 6 160921912 160921912 C T LPAL2 RNA 0.35 TCGA-VQ-AA69-01 6 165715758 165715758 G A C6orf118 Missense_Mutation p.T18M 0.49 deleterious_low_confidence(0.04) unknown(0) TCGA-VQ-AA69-01 6 47846569 47846569 C G PTCHD4 Missense_Mutation p.V671L 0.15 tolerated(1) benign(0.008) TCGA-VQ-AA69-01 6 74491019 74491019 C T CD109 Missense_Mutation p.T647M 0.33 tolerated(0.13) benign(0) TCGA-VQ-AA69-01 7 100361511 100361511 C T ZAN Missense_Mutation p.R1357W 0.29 unknown(0) TCGA-VQ-AA69-01 7 138441228 138441228 G C ATP6V0A4 Missense_Mutation p.Q233E 0.42 tolerated(0.47) benign(0.008) TCGA-VQ-AA69-01 8 140922502 140922502 C T TRAPPC9 Silent p.P1049P 0.27 TCGA-VQ-AA69-01 9 113221287 113221287 A C SVEP1 Missense_Mutation p.C1143W 0.43 probably_damaging(1) TCGA-VQ-AA69-01 9 139973875 139973875 C T UAP1L1 Silent p.T337T 0.39 TCGA-VQ-AA69-01 9 16738427 16738427 C A BNC2 Missense_Mutation p.R20S 0.34 deleterious_low_confidence(0) unknown(0) TCGA-VQ-AA69-01 9 94797132 94797132 G A SPTLC1 Missense_Mutation p.R430C 0.28 tolerated(0.09) benign(0.003) TCGA-VQ-AA69-01 9 97082645 97082645 G A NUTM2F Silent p.L405L 0.43 TCGA-VQ-AA69-01 X 129629117 129629117 G A RP1-274L7.1 RNA 0.93 TCGA-VQ-AA69-01 X 140993840 140993840 C - MAGEC1 Frame_Shift_Del p.P218Lfs*20 0.37 TCGA-VQ-AA6A-01 10 103900281 103900281 C A PPRC1 Missense_Mutation p.D672E 0.11 deleterious_low_confidence(0) benign(0.412) TCGA-VQ-AA6A-01 10 24832448 24832448 G A KIAA1217 Missense_Mutation p.D1417N 0.21 tolerated(0.06) benign(0.037) TCGA-VQ-AA6A-01 10 33468907 33468907 C T NRP1 3'UTR 0.23 TCGA-VQ-AA6A-01 11 107403037 107403037 A G ALKBH8 Silent p.L289L 0.53 TCGA-VQ-AA6A-01 11 114453130 114453130 T C NXPE4 Missense_Mutation p.D237G 0.17 tolerated(0.06) probably_damaging(0.957) TCGA-VQ-AA6A-01 11 124857419 124857419 G A CCDC15 Missense_Mutation p.V433I 0.12 tolerated(0.63) benign(0.065) TCGA-VQ-AA6A-01 11 125547833 125547833 G A ACRV1 Nonsense_Mutation p.Q138* 0.08 TCGA-VQ-AA6A-01 11 17498242 17498242 C T ABCC8 Missense_Mutation p.V28M 0.41 deleterious(0) probably_damaging(0.916) TCGA-VQ-AA6A-01 11 55135537 55135537 T C OR4A15 Silent p.L60L 0.07 TCGA-VQ-AA6A-01 11 55587684 55587684 T G OR5D18 Silent p.T193T 0.27 TCGA-VQ-AA6A-01 11 6244465 6244465 G A FAM160A2 Silent p.L261L 0.15 TCGA-VQ-AA6A-01 11 77639469 77639469 C T INTS4 Silent p.Q430Q 0.28 TCGA-VQ-AA6A-01 11 87883099 87883099 G A RAB38 Missense_Mutation p.T76M 0.16 deleterious(0) probably_damaging(0.999) TCGA-VQ-AA6A-01 11 88300345 88300345 C T GRM5 Missense_Mutation p.A836T 0.15 deleterious(0.05) probably_damaging(0.998) TCGA-VQ-AA6A-01 12 10168246 10168246 G A CLEC12B Silent p.S200S 0.74 TCGA-VQ-AA6A-01 12 113871987 113871987 G A SDSL Missense_Mutation p.G135S 0.23 tolerated(0.08) possibly_damaging(0.849) TCGA-VQ-AA6A-01 12 124496779 124496779 C A ZNF664 Missense_Mutation p.P30T 0.35 deleterious(0) possibly_damaging(0.595) TCGA-VQ-AA6A-01 12 31256772 31256772 G C DDX11 Missense_Mutation p.M906I 0.27 tolerated_low_confidence(0.11) benign(0) TCGA-VQ-AA6A-01 12 34179624 34179624 T A ALG10 Missense_Mutation p.F399Y 0.10 tolerated(0.44) benign(0.4) TCGA-VQ-AA6A-01 12 56811524 56811524 C G TIMELESS Missense_Mutation p.Q1201H 0.07 tolerated_low_confidence(0.65) benign(0.006) TCGA-VQ-AA6A-01 12 73050744 73050744 A C TRHDE Missense_Mutation p.S963R 0.18 tolerated(0.18) possibly_damaging(0.686) TCGA-VQ-AA6A-01 12 8800788 8800788 G A MFAP5 Missense_Mutation p.R141C 0.12 deleterious(0) probably_damaging(1) TCGA-VQ-AA6A-01 13 25899186 25899186 T C NUPL1 Silent p.H337H 0.09 TCGA-VQ-AA6A-01 13 28562670 28562670 C T URAD Silent p.Q35Q 0.12 TCGA-VQ-AA6A-01 13 70293609 70293609 C T KLHL1 Missense_Mutation p.R636K 0.26 deleterious(0.03) possibly_damaging(0.773) TCGA-VQ-AA6A-01 14 102028312 102028312 C T DIO3 Missense_Mutation p.P160L 0.46 deleterious(0) probably_damaging(0.998) TCGA-VQ-AA6A-01 14 21992210 21992210 C A SALL2 Missense_Mutation p.S551I 0.46 deleterious(0) possibly_damaging(0.542) TCGA-VQ-AA6A-01 14 36946210 36946210 G A SFTA3 Missense_Mutation p.T76M 0.29 deleterious_low_confidence(0) possibly_damaging(0.897) TCGA-VQ-AA6A-01 15 23692244 23692244 C T GOLGA6L2 Splice_Site p.X28_splice 0.53 TCGA-VQ-AA6A-01 15 51692398 51692398 G C GLDN Missense_Mutation p.C276S 0.05 tolerated(0.15) possibly_damaging(0.715) TCGA-VQ-AA6A-01 15 85370762 85370762 C T ALPK3 Missense_Mutation p.P279L 0.88 deleterious(0) probably_damaging(0.999) TCGA-VQ-AA6A-01 16 16281042 16281042 G A ABCC6 Silent p.V602V 0.28 TCGA-VQ-AA6A-01 16 47694626 47694626 C T PHKB Missense_Mutation p.R698W 0.42 tolerated(0.16) probably_damaging(0.982) TCGA-VQ-AA6A-01 16 75276972 75276972 G A BCAR1 Missense_Mutation p.A56V 0.83 deleterious(0) probably_damaging(0.999) TCGA-VQ-AA6A-01 17 4389637 4389637 G A SPNS3 Intron 0.22 TCGA-VQ-AA6A-01 17 7578190 7578190 T C TP53 Missense_Mutation p.Y220C 0.88 deleterious(0) probably_damaging(1) TCGA-VQ-AA6A-01 18 32409100 32409100 C G DTNA Intron 0.46 TCGA-VQ-AA6A-01 19 11892467 11892467 A G ZNF441 Missense_Mutation p.T610A 0.44 deleterious(0.04) possibly_damaging(0.871) TCGA-VQ-AA6A-01 19 21607472 21607472 A T ZNF493 Missense_Mutation p.T671S 0.14 tolerated(1) benign(0.022) TCGA-VQ-AA6A-01 19 21991084 21991084 C A ZNF43 Missense_Mutation p.K585N 0.05 deleterious(0.04) possibly_damaging(0.728) TCGA-VQ-AA6A-01 19 49486005 49486005 G C GYS1 Missense_Mutation p.Q305E 0.08 tolerated(0.11) benign(0.174) TCGA-VQ-AA6A-01 19 51021503 51021503 C T LRRC4B Silent p.T489T 0.30 TCGA-VQ-AA6A-01 19 51742771 51742771 A C CD33 Splice_Site p.X309_splice 0.47 TCGA-VQ-AA6A-01 19 52794483 52794483 T G ZNF766 3'UTR 0.08 TCGA-VQ-AA6A-01 19 56934790 56934790 T G ZNF583 Missense_Mutation p.L255V 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-VQ-AA6A-01 19 57184234 57184234 G A ZNF835 5'Flank 0.18 TCGA-VQ-AA6A-01 19 8555579 8555579 C T PRAM1 Missense_Mutation p.R602H 0.40 deleterious(0) probably_damaging(1) TCGA-VQ-AA6A-01 19 9065920 9065920 G A MUC16 Missense_Mutation p.H7176Y 0.22 unknown(0) TCGA-VQ-AA6A-01 19 9088845 9088845 A C MUC16 Silent p.T990T 0.06 TCGA-VQ-AA6A-01 1 114252968 114252968 G A PHTF1 Missense_Mutation p.R393W 0.12 deleterious(0.04) probably_damaging(0.952) TCGA-VQ-AA6A-01 1 117156621 117156621 G A IGSF3 Nonsense_Mutation p.R200* 0.36 TCGA-VQ-AA6A-01 1 145440490 145440491 - GCT TXNIP In_Frame_Ins p.C267dup 0.32 TCGA-VQ-AA6A-01 1 152191104 152191104 A T HRNR Missense_Mutation p.S1001T 0.62 unknown(0) TCGA-VQ-AA6A-01 1 154144579 154144579 G A TPM3 Intron 0.17 TCGA-VQ-AA6A-01 1 16258921 16258921 T G SPEN Silent p.V2062V 0.04 TCGA-VQ-AA6A-01 1 179604922 179604922 G A TDRD5 Missense_Mutation p.G474R 0.06 deleterious(0) probably_damaging(0.988) TCGA-VQ-AA6A-01 1 197072531 197072531 C T ASPM Silent p.A1950A 0.29 TCGA-VQ-AA6A-01 1 205277709 205277709 C T NUAK2 Silent p.Q168Q 0.30 TCGA-VQ-AA6A-01 1 232650417 232650417 T A SIPA1L2 Missense_Mutation p.K223N 0.06 deleterious(0) benign(0.21) TCGA-VQ-AA6A-01 1 234586194 234586194 A C TARBP1 Missense_Mutation p.V614G 0.06 deleterious(0) possibly_damaging(0.451) TCGA-VQ-AA6A-01 1 248201846 248201846 T G OR2L2 Missense_Mutation p.F93V 0.12 deleterious(0.02) benign(0.128) TCGA-VQ-AA6A-01 1 40137639 40137639 G A NT5C1A Silent p.A24A 0.09 TCGA-VQ-AA6A-01 1 69495 69495 C T OR4F5 Silent p.V135V 0.64 TCGA-VQ-AA6A-01 20 17475019 17475019 G A BFSP1 Silent p.D566D 0.36 TCGA-VQ-AA6A-01 20 40790029 40790029 T G PTPRT Missense_Mutation p.K882T 0.11 deleterious(0) probably_damaging(0.992) TCGA-VQ-AA6A-01 20 61513315 61513315 G C DIDO1 Silent p.S1331S 0.10 TCGA-VQ-AA6A-01 20 62326254 62326254 C G RTEL1 Missense_Mutation p.D1114E 0.10 deleterious(0) possibly_damaging(0.897) TCGA-VQ-AA6A-01 21 37586821 37586821 G A DOPEY2 Missense_Mutation p.V366I 0.43 tolerated(1) benign(0) TCGA-VQ-AA6A-01 22 17071787 17071787 T - CCT8L2 Frame_Shift_Del p.I552Sfs*4 0.25 TCGA-VQ-AA6A-01 2 108488521 108488521 A T RGPD4 Missense_Mutation p.E1354V 0.13 deleterious(0) probably_damaging(0.999) TCGA-VQ-AA6A-01 2 175618961 175618961 C T CHRNA1 Missense_Mutation p.V201M 0.22 deleterious(0) probably_damaging(0.955) TCGA-VQ-AA6A-01 2 179434234 179434234 A C TTN Missense_Mutation p.V25542G 0.32 TCGA-VQ-AA6A-01 2 202446915 202446915 C T ALS2CR11 Missense_Mutation p.R181Q 0.16 deleterious(0.02) probably_damaging(0.986) TCGA-VQ-AA6A-01 2 27729380 27729380 G A GCKR Missense_Mutation p.R301Q 0.30 tolerated(0.37) possibly_damaging(0.549) TCGA-VQ-AA6A-01 2 28635263 28635263 G T FOSL2 Missense_Mutation p.S310I 0.28 deleterious(0) probably_damaging(0.979) TCGA-VQ-AA6A-01 2 28635264 28635264 C T FOSL2 Silent p.S310S 0.28 TCGA-VQ-AA6A-01 2 29416760 29416760 G A ALK Missense_Mutation p.P1398L 0.32 deleterious(0.01) probably_damaging(1) TCGA-VQ-AA6A-01 2 32774408 32774408 G C BIRC6 Missense_Mutation p.S4335T 0.06 benign(0.024) TCGA-VQ-AA6A-01 3 107491966 107491966 A G BBX Silent p.K466K 0.20 TCGA-VQ-AA6A-01 3 172166087 172166087 G A GHSR Silent p.P39P 0.39 TCGA-VQ-AA6A-01 3 36874506 36874506 C T TRANK1 Missense_Mutation p.G2146R 0.54 tolerated(0.07) benign(0.097) TCGA-VQ-AA6A-01 3 44776214 44776214 A G ZNF501 Missense_Mutation p.T101A 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.889) TCGA-VQ-AA6A-01 3 48688881 48688881 C T CELSR3 Missense_Mutation p.G2033R 0.23 deleterious(0) probably_damaging(1) TCGA-VQ-AA6A-01 3 52823804 52823804 C T ITIH1 Missense_Mutation p.T752M 0.06 deleterious(0.02) benign(0.378) TCGA-VQ-AA6A-01 3 55038837 55038837 G A CACNA2D3 Missense_Mutation p.S913N 0.41 tolerated(0.25) benign(0.424) TCGA-VQ-AA6A-01 3 99897180 99897180 T C CMSS1 Missense_Mutation p.M263T 0.15 tolerated(0.63) benign(0.001) TCGA-VQ-AA6A-01 4 156617926 156617926 T A GUCY1A3 5'UTR 0.40 TCGA-VQ-AA6A-01 4 156632170 156632170 A C GUCY1A3 Missense_Mutation p.T285P 0.12 deleterious(0.03) probably_damaging(0.953) TCGA-VQ-AA6A-01 4 156849542 156849542 T G CTSO Missense_Mutation p.S293R 0.25 tolerated(0.49) benign(0.008) TCGA-VQ-AA6A-01 4 177608466 177608466 C A VEGFC Missense_Mutation p.Q340H 0.06 deleterious(0.02) probably_damaging(0.998) TCGA-VQ-AA6A-01 4 56291580 56291581 - T TMEM165 Frame_Shift_Ins p.S314Ffs*8 0.19 TCGA-VQ-AA6A-01 5 115822473 115822473 G T SEMA6A Missense_Mutation p.L312M 0.19 tolerated(0.25) benign(0.406) TCGA-VQ-AA6A-01 5 127712532 127712532 T C FBN2 Missense_Mutation p.T622A 0.25 tolerated(1) benign(0.006) TCGA-VQ-AA6A-01 5 140012023 140012023 C T CD14 Silent p.S182S 0.11 TCGA-VQ-AA6A-01 5 143587084 143587084 A T KCTD16 Silent p.S269S 0.25 TCGA-VQ-AA6A-01 5 157158516 157158516 A G THG1L Missense_Mutation p.Y23C 0.20 tolerated(0.2) benign(0) TCGA-VQ-AA6A-01 5 169507257 169507257 T C DOCK2 Missense_Mutation p.F1753L 0.36 tolerated_low_confidence(0.6) benign(0.034) TCGA-VQ-AA6A-01 5 32229953 32229953 C T MTMR12 Nonsense_Mutation p.W725* 0.14 TCGA-VQ-AA6A-01 5 35072697 35072697 C T PRLR Missense_Mutation p.E175K 0.29 deleterious(0.04) benign(0.062) TCGA-VQ-AA6A-01 5 5239960 5239960 T G ADAMTS16 Silent p.T815T 0.14 TCGA-VQ-AA6A-01 5 82841381 82841381 G A VCAN Silent p.P3097P 0.34 TCGA-VQ-AA6A-01 6 100368740 100368740 C A MCHR2 3'UTR 0.46 TCGA-VQ-AA6A-01 6 110301330 110301330 G A GPR6 Missense_Mutation p.A339T 0.43 tolerated(0.14) benign(0.103) TCGA-VQ-AA6A-01 6 132938884 132938884 T A TAAR2 Missense_Mutation p.K154I 0.24 deleterious(0.03) possibly_damaging(0.649) TCGA-VQ-AA6A-01 6 146720677 146720677 G A GRM1 Silent p.K834K 0.08 TCGA-VQ-AA6A-01 6 152782822 152782822 C T SYNE1 Silent p.K768K 0.18 TCGA-VQ-AA6A-01 6 160430155 160430155 G - IGF2R Frame_Shift_Del p.T137Pfs*8 0.31 TCGA-VQ-AA6A-01 6 166571969 166571969 G A T Missense_Mutation p.A381V 0.42 tolerated(0.15) benign(0.006) TCGA-VQ-AA6A-01 6 27806583 27806583 G A HIST1H2BN Silent p.Q48Q 0.17 TCGA-VQ-AA6A-01 6 43227001 43227001 C T TTBK1 Silent p.I414I 0.35 TCGA-VQ-AA6A-01 7 100683252 100683252 C A MUC17 Missense_Mutation p.T2852K 0.08 unknown(0) TCGA-VQ-AA6A-01 7 121679622 121679622 A C PTPRZ1 Silent p.R1873R 0.03 TCGA-VQ-AA6A-01 7 35673458 35673458 G A HERPUD2 Missense_Mutation p.R355C 0.04 deleterious(0) possibly_damaging(0.726) TCGA-VQ-AA6A-01 7 810161 810161 C T HEATR2 Silent p.L613L 0.08 TCGA-VQ-AA6A-01 8 113662428 113662428 T G CSMD3 Missense_Mutation p.K1052T 0.15 tolerated(0.17) probably_damaging(0.948) TCGA-VQ-AA6A-01 8 22056653 22056653 C T BMP1 Intron 0.46 TCGA-VQ-AA6A-01 8 65517264 65517264 T C CYP7B1 Missense_Mutation p.D403G 0.30 deleterious(0) probably_damaging(1) TCGA-VQ-AA6A-01 8 70617453 70617453 C T SLCO5A1 Missense_Mutation p.V479I 0.14 tolerated(0.5) benign(0.393) TCGA-VQ-AA6A-01 8 89053875 89053875 T A MMP16 Silent p.P546P 0.25 TCGA-VQ-AA6A-01 9 100249516 100249516 A G TDRD7 Missense_Mutation p.D993G 0.30 deleterious(0) probably_damaging(1) TCGA-VQ-AA6A-01 9 135553705 135553705 C T GTF3C4 Silent p.L233L 0.28 TCGA-VQ-AA6A-01 X 129156940 129156940 C G BCORL1 Missense_Mutation p.R1226G 0.84 probably_damaging(0.998) TCGA-VQ-AA6A-01 X 144909274 144909274 A T TMEM257 Missense_Mutation p.I27F 0.92 tolerated_low_confidence(0.05) benign(0) TCGA-VQ-AA6A-01 X 151904507 151904507 C T CSAG1 Missense_Mutation p.S2L 0.82 tolerated_low_confidence(0.66) benign(0.009) TCGA-VQ-AA6A-01 X 53571559 53571559 C T HUWE1 Missense_Mutation p.R3738H 0.21 unknown(0) TCGA-VQ-AA6A-01 X 8507759 8507759 T G KAL1 Missense_Mutation p.E465D 0.11 deleterious(0.02) benign(0.109) TCGA-VQ-AA6B-01 10 115609750 115609750 C G DCLRE1A Missense_Mutation p.D372H 0.24 tolerated(0.59) benign(0.006) TCGA-VQ-AA6B-01 10 1229245 1229245 G A ADARB2 Missense_Mutation p.A703V 0.61 tolerated(0.27) probably_damaging(0.961) TCGA-VQ-AA6B-01 10 49400793 49400793 C T FRMPD2 Missense_Mutation p.S700N 0.13 tolerated(0.06) benign(0.164) TCGA-VQ-AA6B-01 10 52575792 52575792 G A A1CF Missense_Mutation p.A380V 0.21 tolerated(0.16) benign(0.287) TCGA-VQ-AA6B-01 11 129782048 129782048 G T PRDM10 Missense_Mutation p.Q976K 0.04 deleterious_low_confidence(0) benign(0.068) TCGA-VQ-AA6B-01 11 18195400 18195400 G A MRGPRX4 Silent p.L199L 0.16 TCGA-VQ-AA6B-01 11 35201924 35201924 C T CD44 Nonsense_Mutation p.Q113* 0.40 TCGA-VQ-AA6B-01 11 5475083 5475083 G A OR51I2 Missense_Mutation p.R122H 0.42 deleterious(0.02) benign(0.025) TCGA-VQ-AA6B-01 11 57004341 57004341 G A APLNR Silent p.N46N 0.09 TCGA-VQ-AA6B-01 11 58126289 58126289 A G OR5B17 Missense_Mutation p.I85T 0.13 tolerated_low_confidence(1) benign(0.013) TCGA-VQ-AA6B-01 11 60184453 60184453 T G MS4A14 Missense_Mutation p.L704R 0.25 deleterious_low_confidence(0.04) benign(0.267) TCGA-VQ-AA6B-01 11 60292679 60292679 G T MS4A13 Splice_Site p.X63_splice 0.41 TCGA-VQ-AA6B-01 11 68664113 68664113 G A MRPL21 Missense_Mutation p.T89M 0.18 tolerated(0.06) benign(0.075) TCGA-VQ-AA6B-01 11 82872473 82872476 ATTT - PCF11 Frame_Shift_Del p.I101Vfs*27 0.29 TCGA-VQ-AA6B-01 11 829491 829491 C T EFCAB4A Nonsense_Mutation p.R137* 0.36 TCGA-VQ-AA6B-01 12 113444379 113444379 C T OAS2 Missense_Mutation p.R544C 0.24 deleterious(0.03) possibly_damaging(0.538) TCGA-VQ-AA6B-01 12 124235702 124235702 C T ATP6V0A2 Missense_Mutation p.P661S 0.28 deleterious(0) probably_damaging(0.95) TCGA-VQ-AA6B-01 12 18691160 18691160 C T PIK3C2G Missense_Mutation p.H1091Y 0.33 deleterious(0) possibly_damaging(0.804) TCGA-VQ-AA6B-01 12 45059371 45059371 C T NELL2 Missense_Mutation p.G497E 0.54 tolerated(0.11) probably_damaging(1) TCGA-VQ-AA6B-01 13 108862429 108862429 A C LIG4 Missense_Mutation p.I396M 0.21 tolerated(0.1) benign(0.039) TCGA-VQ-AA6B-01 13 113965128 113965128 C A LAMP1 Missense_Mutation p.L170I 0.07 deleterious(0.04) possibly_damaging(0.491) TCGA-VQ-AA6B-01 13 26411382 26411382 C T ATP8A2 Missense_Mutation p.L946F 0.28 deleterious(0) probably_damaging(0.995) TCGA-VQ-AA6B-01 13 35644884 35644884 T G NBEA Missense_Mutation p.I489S 0.07 deleterious(0) probably_damaging(0.998) TCGA-VQ-AA6B-01 13 41379284 41379284 C T SLC25A15 Silent p.F115F 0.17 TCGA-VQ-AA6B-01 13 42830529 42830529 G A FHP1 RNA 0.38 TCGA-VQ-AA6B-01 13 88328046 88328046 C A SLITRK5 Missense_Mutation p.H135N 0.15 deleterious(0.01) probably_damaging(0.997) TCGA-VQ-AA6B-01 15 22954340 22954340 G A CYFIP1 Missense_Mutation p.R497Q 0.36 tolerated(0.12) probably_damaging(0.943) TCGA-VQ-AA6B-01 15 42840306 42840309 AGTT - LRRC57 Frame_Shift_Del p.K73Rfs*11 0.37 TCGA-VQ-AA6B-01 15 89074875 89074875 C T DET1 Missense_Mutation p.R32H 0.06 tolerated(0.07) benign(0.207) TCGA-VQ-AA6B-01 16 20970574 20970574 C T DNAH3 Missense_Mutation p.A3585T 0.12 tolerated(1) benign(0.001) TCGA-VQ-AA6B-01 16 2812304 2812304 G A SRRM2 Missense_Mutation p.R592Q 0.06 unknown(0) TCGA-VQ-AA6B-01 16 30777564 30777564 C T RNF40 Silent p.A358A 0.17 TCGA-VQ-AA6B-01 16 89629397 89629397 C G RPL13 Missense_Mutation p.R195G 0.05 deleterious(0) benign(0.001) TCGA-VQ-AA6B-01 17 11622754 11622754 G A DNAH9 Missense_Mutation p.A1886T 0.36 possibly_damaging(0.908) TCGA-VQ-AA6B-01 17 33481607 33481607 C A UNC45B Silent p.L162L 0.05 TCGA-VQ-AA6B-01 17 37566780 37566780 T A MED1 Missense_Mutation p.N565I 0.07 deleterious(0.05) benign(0.088) TCGA-VQ-AA6B-01 17 38457279 38457279 G A CDC6 Silent p.G483G 0.05 TCGA-VQ-AA6B-01 17 39471597 39471597 G A KRTAP17-1 Silent p.C102C 0.04 TCGA-VQ-AA6B-01 17 39623213 39623213 G A KRT32 Missense_Mutation p.A122V 0.08 deleterious(0.04) benign(0.081) TCGA-VQ-AA6B-01 17 7577124 7577124 C T TP53 Missense_Mutation p.V272M 0.73 deleterious(0) probably_damaging(0.997) TCGA-VQ-AA6B-01 17 78866671 78866671 T G RPTOR Splice_Site p.X748_splice 0.24 TCGA-VQ-AA6B-01 18 56585989 56585989 C G ZNF532 Nonsense_Mutation p.S157* 0.28 TCGA-VQ-AA6B-01 18 7016616 7016616 C T LAMA1 Missense_Mutation p.V955M 0.32 tolerated(0.07) benign(0.028) TCGA-VQ-AA6B-01 18 7231695 7231695 G A LRRC30 Missense_Mutation p.E187K 0.21 tolerated(0.64) benign(0.05) TCGA-VQ-AA6B-01 18 736939 736939 A C YES1 Missense_Mutation p.I387S 0.24 deleterious(0.03) probably_damaging(0.999) TCGA-VQ-AA6B-01 19 9491772 9491772 T C ZNF177 Silent p.G255G 0.22 TCGA-VQ-AA6B-01 1 108138953 108138953 T A VAV3 Missense_Mutation p.E744V 0.13 deleterious(0.01) possibly_damaging(0.844) TCGA-VQ-AA6B-01 1 1328835 1328835 G C CCNL2 Missense_Mutation p.I200M 0.08 deleterious(0) probably_damaging(1) TCGA-VQ-AA6B-01 1 152276743 152276743 C A FLG Missense_Mutation p.S3540I 0.16 unknown(0) TCGA-VQ-AA6B-01 1 19412735 19412735 C T UBR4 Missense_Mutation p.S4906N 0.33 probably_damaging(0.95) TCGA-VQ-AA6B-01 1 197091307 197091307 A C ASPM Missense_Mutation p.N1241K 0.23 deleterious(0) probably_damaging(1) TCGA-VQ-AA6B-01 1 200876966 200876966 C T C1orf106 Silent p.L175L 0.32 TCGA-VQ-AA6B-01 1 220387206 220387206 A T RAB3GAP2 Missense_Mutation p.F99Y 0.29 deleterious(0) possibly_damaging(0.579) TCGA-VQ-AA6B-01 1 225609954 225609957 TTCC - LBR Frame_Shift_Del p.R63Kfs*54 0.25 TCGA-VQ-AA6B-01 20 17639350 17639351 CT - RRBP1 Intron 0.32 TCGA-VQ-AA6B-01 20 2796027 2796027 C A C20orf141 Missense_Mutation p.S66Y 0.10 deleterious(0.01) possibly_damaging(0.781) TCGA-VQ-AA6B-01 20 3687153 3687153 G A SIGLEC1 Missense_Mutation p.R84C 0.20 deleterious(0) benign(0.073) TCGA-VQ-AA6B-01 20 48127701 48127701 G A PTGIS Nonsense_Mutation p.R408* 0.39 TCGA-VQ-AA6B-01 20 49626861 49626861 C T KCNG1 Silent p.P5P 0.06 TCGA-VQ-AA6B-01 20 50701410 50701410 C T ZFP64 Missense_Mutation p.V542I 0.53 tolerated(1) benign(0) TCGA-VQ-AA6B-01 20 62203506 62203506 T C HELZ2 Missense_Mutation p.H78R 0.22 deleterious(0.03) benign(0.09) TCGA-VQ-AA6B-01 22 41980020 41980020 C T PMM1 Silent p.S139S 0.58 TCGA-VQ-AA6B-01 22 43600117 43600117 C T SCUBE1 Silent p.A951A 0.07 TCGA-VQ-AA6B-01 2 10912689 10912689 A C ATP6V1C2 Missense_Mutation p.Q197H 0.04 tolerated(0.18) possibly_damaging(0.676) TCGA-VQ-AA6B-01 2 109384137 109384137 G T RANBP2 Missense_Mutation p.C2381F 0.18 deleterious(0) probably_damaging(1) TCGA-VQ-AA6B-01 2 141528473 141528473 T G LRP1B Missense_Mutation p.Q1868P 0.15 benign(0.153) TCGA-VQ-AA6B-01 2 141819648 141819648 T - LRP1B Frame_Shift_Del p.N403Ifs*17 0.15 TCGA-VQ-AA6B-01 2 219674317 219674317 G C CYP27A1 Missense_Mutation p.K91N 0.22 tolerated(0.21) benign(0.128) TCGA-VQ-AA6B-01 2 239162209 239162209 C T PER2 Missense_Mutation p.A819T 0.21 tolerated(0.84) benign(0.005) TCGA-VQ-AA6B-01 2 27259969 27259969 C T TMEM214 Silent p.G311G 0.13 TCGA-VQ-AA6B-01 2 27317691 27317691 G A KHK Intron 0.08 TCGA-VQ-AA6B-01 2 32773057 32773057 G C BIRC6 Missense_Mutation p.E4317D 0.21 probably_damaging(0.966) TCGA-VQ-AA6B-01 2 46803345 46803345 T G RHOQ Silent p.L107L 0.04 TCGA-VQ-AA6B-01 3 155311896 155311896 C A PLCH1 Missense_Mutation p.D90Y 0.45 deleterious(0) probably_damaging(0.993) TCGA-VQ-AA6B-01 3 194877249 194877249 C A XXYLT1 Missense_Mutation p.L238F 0.07 deleterious(0) probably_damaging(0.999) TCGA-VQ-AA6B-01 4 70460389 70460389 G - UGT2A1 Frame_Shift_Del p.T537Lfs*34 0.42 TCGA-VQ-AA6B-01 4 94138008 94138008 T C GRID2 Silent p.H303H 0.30 TCGA-VQ-AA6B-01 5 140741332 140741332 G A PCDHGB2 Missense_Mutation p.A544T 0.20 tolerated(0.16) benign(0.274) TCGA-VQ-AA6B-01 5 141038980 141038980 C T ARAP3 Missense_Mutation p.V1111M 0.24 deleterious(0.03) benign(0.158) TCGA-VQ-AA6B-01 5 150311179 150311179 G A ZNF300P1 RNA 0.24 TCGA-VQ-AA6B-01 5 150656989 150656989 G A SLC36A3 Missense_Mutation p.H501Y 0.53 tolerated(1) benign(0.012) TCGA-VQ-AA6B-01 5 15500724 15500724 G A FBXL7 5'UTR 0.27 TCGA-VQ-AA6B-01 5 160721399 160721399 C G GABRB2 Missense_Mutation p.E410Q 0.23 tolerated(0.08) possibly_damaging(0.515) TCGA-VQ-AA6B-01 5 73091157 73091157 G A ARHGEF28 Missense_Mutation p.R322H 0.48 tolerated(0.55) benign(0.001) TCGA-VQ-AA6B-01 6 121481227 121481227 G A TBC1D32 Missense_Mutation p.P901L 0.20 deleterious(0.01) possibly_damaging(0.827) TCGA-VQ-AA6B-01 6 123892199 123892199 C G TRDN Missense_Mutation p.R34T 0.22 deleterious_low_confidence(0) unknown(0) TCGA-VQ-AA6B-01 6 149922812 149922812 G - KATNA1 Frame_Shift_Del p.T269Nfs*10 0.14 TCGA-VQ-AA6B-01 6 159654208 159654208 C T FNDC1 Silent p.T888T 0.40 TCGA-VQ-AA6B-01 6 47847118 47847118 C T PTCHD4 Missense_Mutation p.G488R 0.30 tolerated(0.07) benign(0.126) TCGA-VQ-AA6B-01 6 50681720 50681721 - T TFAP2D 5'UTR 0.13 TCGA-VQ-AA6B-01 6 74123487 74123487 T C DDX43 Missense_Mutation p.V492A 0.24 deleterious(0.01) benign(0.437) TCGA-VQ-AA6B-01 7 111381186 111381186 C T DOCK4 Silent p.G1659G 0.54 TCGA-VQ-AA6B-01 7 16298017 16298018 - AAC ISPD In_Frame_Ins p.V372dup 0.23 TCGA-VQ-AA6B-01 7 19765311 19765311 C G TMEM196 Missense_Mutation p.K95N 0.36 tolerated(0.06) possibly_damaging(0.607) TCGA-VQ-AA6B-01 7 75145055 75145055 G C Y_RNA 5'Flank 0.12 TCGA-VQ-AA6B-01 7 75145063 75145063 A C Y_RNA 5'Flank 0.10 TCGA-VQ-AA6B-01 7 90741976 90741976 G A CDK14 Missense_Mutation p.R407Q 0.12 tolerated(1) benign(0.074) TCGA-VQ-AA6B-01 7 94028389 94028389 G T COL1A2 Missense_Mutation p.G42V 0.15 unknown(0) TCGA-VQ-AA6B-01 8 105361261 105361261 T G DCSTAMP Missense_Mutation p.F161V 0.04 tolerated(0.14) benign(0.021) TCGA-VQ-AA6B-01 8 133827070 133827070 A G PHF20L1 Silent p.E373E 0.23 TCGA-VQ-AA6B-01 8 95653617 95653617 G C ESRP1 Missense_Mutation p.G24A 0.20 deleterious(0) probably_damaging(0.929) TCGA-VQ-AA6B-01 9 100890976 100890976 G A CORO2A Silent p.D331D 0.21 TCGA-VQ-AA6B-01 9 116187311 116187311 C T C9orf43 Nonsense_Mutation p.R274* 0.16 TCGA-VQ-AA6B-01 9 16436325 16436325 G C BNC2 Missense_Mutation p.P623A 0.25 tolerated(0.37) benign(0.003) TCGA-VQ-AA6B-01 9 33900191 33900191 C T UBE2R2 Missense_Mutation p.S95L 0.21 deleterious(0) benign(0.058) TCGA-VQ-AA6B-01 9 75387347 75387347 G A TMC1 Missense_Mutation p.V254I 0.23 tolerated(0.06) benign(0.042) TCGA-VQ-AA6B-01 X 14861670 14861670 G A FANCB 3'UTR 0.23 TCGA-VQ-AA6B-01 X 34960975 34960975 G A FAM47B Silent p.R9R 0.21 TCGA-VQ-AA6B-01 Y 6955427 6955427 T A TBL1Y Nonsense_Mutation p.L467* 0.69 TCGA-VQ-AA6D-01 10 104160037 104160037 G T NFKB2 Silent p.T529T 0.50 TCGA-VQ-AA6D-01 10 105793702 105793702 C T COL17A1 Splice_Site p.X1386_splice 0.56 TCGA-VQ-AA6D-01 10 118443319 118443319 C T HSPA12A Missense_Mutation p.G273E 0.66 tolerated(0.2) benign(0.149) TCGA-VQ-AA6D-01 10 118713613 118713613 T C KIAA1598 Missense_Mutation p.T126A 0.14 tolerated(0.81) benign(0.001) TCGA-VQ-AA6D-01 10 11990443 11990443 T A UPF2 Missense_Mutation p.E1033D 0.09 tolerated(0.62) benign(0.001) TCGA-VQ-AA6D-01 10 135025014 135025014 G T KNDC1 Missense_Mutation p.V1333L 0.29 tolerated(0.06) benign(0.326) TCGA-VQ-AA6D-01 10 13701400 13701400 C T FRMD4A Silent p.P663P 0.08 TCGA-VQ-AA6D-01 10 1405703 1405703 G A ADARB2 Silent p.H199H 0.36 TCGA-VQ-AA6D-01 10 18292199 18292199 G A SLC39A12 Missense_Mutation p.G620D 0.10 deleterious(0) probably_damaging(0.989) TCGA-VQ-AA6D-01 10 22828936 22828937 - T PIP4K2A Frame_Shift_Ins p.K369Efs*10 0.12 TCGA-VQ-AA6D-01 10 27688161 27688161 C - PTCHD3 Frame_Shift_Del p.V456Sfs*7 0.20 TCGA-VQ-AA6D-01 10 29752450 29752450 G A SVIL Missense_Mutation p.A2083V 0.10 deleterious(0) possibly_damaging(0.7) TCGA-VQ-AA6D-01 10 3124610 3124610 G A PFKP Missense_Mutation p.R48H 0.18 deleterious(0.01) probably_damaging(0.994) TCGA-VQ-AA6D-01 10 33491861 33491861 C T NRP1 Missense_Mutation p.A608T 0.06 tolerated(0.4) benign(0.012) TCGA-VQ-AA6D-01 10 33559611 33559611 A G NRP1 Missense_Mutation p.F141S 0.44 deleterious(0.02) benign(0.096) TCGA-VQ-AA6D-01 10 46960004 46960004 C T SYT15 3'Flank 0.08 TCGA-VQ-AA6D-01 10 49448426 49448426 G A FRMPD2 Missense_Mutation p.P226L 0.08 tolerated(0.39) benign(0.001) TCGA-VQ-AA6D-01 10 518414 518414 C T DIP2C Missense_Mutation p.R78Q 0.34 deleterious(0.02) probably_damaging(0.968) TCGA-VQ-AA6D-01 10 5929901 5929901 G A ANKRD16 Silent p.G148G 0.23 TCGA-VQ-AA6D-01 10 64960240 64960240 T C JMJD1C Missense_Mutation p.R1758G 0.10 deleterious(0) probably_damaging(0.995) TCGA-VQ-AA6D-01 10 70225550 70225550 C T DNA2 Missense_Mutation p.R240H 0.36 tolerated(0.2) benign(0.045) TCGA-VQ-AA6D-01 10 73115851 73115851 C T SLC29A3 Silent p.G208G 0.12 TCGA-VQ-AA6D-01 10 74692128 74692128 G A OIT3 Missense_Mutation p.C495Y 0.08 deleterious(0) probably_damaging(1) TCGA-VQ-AA6D-01 10 79601884 79601884 C A DLG5 Nonsense_Mutation p.E398* 0.10 TCGA-VQ-AA6D-01 10 81373717 81373717 C T SFTPA1 Missense_Mutation p.R214C 0.37 tolerated(0.12) benign(0.013) TCGA-VQ-AA6D-01 10 82269133 82269133 T C TSPAN14 Missense_Mutation p.V119A 0.36 deleterious(0) possibly_damaging(0.906) TCGA-VQ-AA6D-01 10 83635339 83635339 C T NRG3 Silent p.L81L 0.29 TCGA-VQ-AA6D-01 10 87615908 87615908 C T GRID1 Missense_Mutation p.A331T 0.08 tolerated(0.06) probably_damaging(1) TCGA-VQ-AA6D-01 10 91488956 91488956 C T KIF20B Silent p.N741N 0.09 TCGA-VQ-AA6D-01 10 93768878 93768878 G T BTAF1 Missense_Mutation p.G1339V 0.40 deleterious(0) probably_damaging(0.996) TCGA-VQ-AA6D-01 10 94267893 94267893 A G IDE Missense_Mutation p.V377A 0.06 deleterious(0.04) possibly_damaging(0.905) TCGA-VQ-AA6D-01 10 95720944 95720944 A G PIPSL RNA 0.27 TCGA-VQ-AA6D-01 10 99509340 99509340 C T ZFYVE27 Nonsense_Mutation p.R221* 0.07 TCGA-VQ-AA6D-01 11 101953881 101953881 G A C11orf70 Missense_Mutation p.R252H 0.24 tolerated(0.08) possibly_damaging(0.576) TCGA-VQ-AA6D-01 11 105769069 105769069 T A GRIA4 Missense_Mutation p.F267L 0.33 tolerated(0.52) benign(0.252) TCGA-VQ-AA6D-01 11 107462697 107462697 T C AP000889.3 Missense_Mutation p.F72L 0.22 tolerated_low_confidence(0.37) possibly_damaging(0.682) TCGA-VQ-AA6D-01 11 107904604 107904604 C G CUL5 Missense_Mutation p.S34C 0.06 deleterious(0.04) benign(0.008) TCGA-VQ-AA6D-01 11 107904613 107904613 A G CUL5 Missense_Mutation p.K37R 0.06 tolerated(0.9) benign(0.001) TCGA-VQ-AA6D-01 11 108032520 108032520 A G NPAT Missense_Mutation p.L1098P 0.09 tolerated(0.14) benign(0.009) TCGA-VQ-AA6D-01 11 108216477 108216477 A - ATM Frame_Shift_Del p.K2811Sfs*46 0.13 TCGA-VQ-AA6D-01 11 108385451 108385451 T - EXPH5 Frame_Shift_Del p.K261Nfs*15 0.08 TCGA-VQ-AA6D-01 11 111622921 111622921 C T PPP2R1B Missense_Mutation p.A434T 0.08 deleterious(0) possibly_damaging(0.852) TCGA-VQ-AA6D-01 11 114392925 114392925 G A NXPE1 Missense_Mutation p.A328V 0.12 deleterious(0.02) benign(0.148) TCGA-VQ-AA6D-01 11 116730111 116730111 G A SIK3 Missense_Mutation p.R773C 0.17 deleterious_low_confidence(0) possibly_damaging(0.816) TCGA-VQ-AA6D-01 11 117351893 117351893 C T DSCAML1 Silent p.V944V 0.23 TCGA-VQ-AA6D-01 11 118081267 118081267 A G AMICA1 Missense_Mutation p.L120P 0.22 deleterious(0.02) probably_damaging(0.993) TCGA-VQ-AA6D-01 11 118498938 118498938 C T PHLDB1 Nonsense_Mutation p.R467* 0.19 TCGA-VQ-AA6D-01 11 119044735 119044735 T C NLRX1 Silent p.C259C 0.54 TCGA-VQ-AA6D-01 11 119145619 119145619 C T CBL Silent p.D275D 0.11 TCGA-VQ-AA6D-01 11 121000895 121000895 G T TECTA Silent p.G972G 0.32 TCGA-VQ-AA6D-01 11 12244192 12244192 A G MICAL2 Missense_Mutation p.T451A 0.12 deleterious(0) probably_damaging(0.996) TCGA-VQ-AA6D-01 11 124267096 124267096 A G OR8B3 Missense_Mutation p.L51P 0.13 deleterious_low_confidence(0) possibly_damaging(0.542) TCGA-VQ-AA6D-01 11 124765458 124765458 C T ROBO4 Missense_Mutation p.G311R 0.56 tolerated(0.17) benign(0.013) TCGA-VQ-AA6D-01 11 1264966 1264966 G A MUC5B Missense_Mutation p.A2286T 0.18 unknown(0) TCGA-VQ-AA6D-01 11 1269158 1269160 CCT - MUC5B In_Frame_Del p.S3685del 0.38 TCGA-VQ-AA6D-01 11 133801415 133801415 G T IGSF9B Missense_Mutation p.A434D 0.24 deleterious(0.02) probably_damaging(0.988) TCGA-VQ-AA6D-01 11 20676537 20676537 G A SLC6A5 3'UTR 0.44 TCGA-VQ-AA6D-01 11 22646511 22646511 A G FANCF Silent p.G282G 0.08 TCGA-VQ-AA6D-01 11 32636346 32636346 C T CCDC73 Silent p.T506T 0.20 TCGA-VQ-AA6D-01 11 35302532 35302532 C T SLC1A2 Missense_Mutation p.A435T 0.10 deleterious(0) probably_damaging(1) TCGA-VQ-AA6D-01 11 397561 397561 T C PKP3 Missense_Mutation p.S323P 0.06 deleterious(0.01) probably_damaging(0.949) TCGA-VQ-AA6D-01 11 45924507 45924507 C T MAPK8IP1 Missense_Mutation p.R397W 0.20 deleterious(0) possibly_damaging(0.902) TCGA-VQ-AA6D-01 11 46903425 46903425 C T LRP4 Missense_Mutation p.S881N 0.35 tolerated(1) benign(0.002) TCGA-VQ-AA6D-01 11 47594890 47594890 T - KBTBD4 Frame_Shift_Del p.E402Rfs*27 0.20 TCGA-VQ-AA6D-01 11 48267298 48267298 C T OR4X2 Missense_Mutation p.L215F 0.07 tolerated(0.81) benign(0.042) TCGA-VQ-AA6D-01 11 50003744 50003744 T G OR4C12 Missense_Mutation p.Q98H 0.11 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-VQ-AA6D-01 11 51411669 51411669 C T OR4A5 Missense_Mutation p.V243I 0.48 deleterious_low_confidence(0.01) possibly_damaging(0.577) TCGA-VQ-AA6D-01 11 55036723 55036723 A T TRIM48 Missense_Mutation p.E195V 0.36 tolerated(0.06) probably_damaging(0.976) TCGA-VQ-AA6D-01 11 55062971 55062971 T G TRIM51HP RNA 0.08 TCGA-VQ-AA6D-01 11 55135871 55135871 T A OR4A15 Missense_Mutation p.L171H 0.04 deleterious_low_confidence(0) possibly_damaging(0.465) TCGA-VQ-AA6D-01 11 55890428 55890428 A T OR8H3 Missense_Mutation p.N194Y 0.07 tolerated(0.13) benign(0.006) TCGA-VQ-AA6D-01 11 56344776 56344776 C T OR5M10 Missense_Mutation p.C141Y 0.24 deleterious(0.01) probably_damaging(1) TCGA-VQ-AA6D-01 11 61041988 61041988 T C VWCE Missense_Mutation p.T522A 0.07 tolerated(0.09) probably_damaging(0.991) TCGA-VQ-AA6D-01 11 6129657 6129657 A G OR56B4 Missense_Mutation p.M217V 0.40 tolerated(0.47) benign(0.05) TCGA-VQ-AA6D-01 11 62373581 62373581 C T EML3 Missense_Mutation p.R537Q 0.06 deleterious(0) possibly_damaging(0.838) TCGA-VQ-AA6D-01 11 64504325 64504325 G A RASGRP2 Missense_Mutation p.A332V 0.19 tolerated(0.7) benign(0.042) TCGA-VQ-AA6D-01 11 64600111 64600111 C T CDC42BPG Silent p.P990P 0.10 TCGA-VQ-AA6D-01 11 64897632 64897632 G C SYVN1 Missense_Mutation p.P417R 0.32 tolerated(0.44) unknown(0) TCGA-VQ-AA6D-01 11 66311238 66311238 G A ZDHHC24 Nonsense_Mutation p.R166* 0.26 TCGA-VQ-AA6D-01 11 6638073 6638073 G A TPP1 Silent p.F235F 0.33 TCGA-VQ-AA6D-01 11 66444524 66444524 A C RBM4B Silent p.L9L 0.31 TCGA-VQ-AA6D-01 11 68682369 68682369 C T IGHMBP2 Missense_Mutation p.R264C 0.40 deleterious(0) probably_damaging(0.999) TCGA-VQ-AA6D-01 11 68830380 68830380 C A TPCN2 Missense_Mutation p.P192H 0.07 deleterious(0) probably_damaging(1) TCGA-VQ-AA6D-01 11 6964827 6964827 A C ZNF215 Missense_Mutation p.K223Q 0.39 tolerated(0.34) benign(0.113) TCGA-VQ-AA6D-01 11 69924676 69924676 C T ANO1 5'UTR 0.19 TCGA-VQ-AA6D-01 11 70507709 70507709 C T SHANK2 Missense_Mutation p.G644E 0.32 deleterious(0.02) probably_damaging(0.997) TCGA-VQ-AA6D-01 11 71820850 71820850 G C ANAPC15 3'UTR 0.31 TCGA-VQ-AA6D-01 11 71847090 71847090 C T FOLR3 Missense_Mutation p.T31M 0.26 tolerated(0.07) possibly_damaging(0.791) TCGA-VQ-AA6D-01 11 72423491 72423491 G A ARAP1 Silent p.G290G 0.31 TCGA-VQ-AA6D-01 11 73074799 73074799 G A ARHGEF17 Missense_Mutation p.V1752M 0.43 deleterious(0.01) probably_damaging(0.915) TCGA-VQ-AA6D-01 11 86947719 86947719 T G TMEM135 Missense_Mutation p.F168V 0.16 deleterious(0) benign(0.012) TCGA-VQ-AA6D-01 11 94278360 94278361 AG - FUT4 Frame_Shift_Del p.Q354Rfs*195 0.53 TCGA-VQ-AA6D-01 11 95555113 95555113 A - CEP57 Frame_Shift_Del p.K262Rfs*31 0.28 TCGA-VQ-AA6D-01 11 95574829 95574829 C T MTMR2 Silent p.S477S 0.16 TCGA-VQ-AA6D-01 12 101480520 101480520 C T ANO4 Missense_Mutation p.A505V 0.38 tolerated(0.28) benign(0.024) TCGA-VQ-AA6D-01 12 10339039 10339039 C T TMEM52B Missense_Mutation p.A33V 0.12 tolerated(0.26) benign(0.016) TCGA-VQ-AA6D-01 12 103696191 103696191 C T C12orf42 Missense_Mutation p.D260N 0.08 tolerated(0.4) probably_damaging(0.997) TCGA-VQ-AA6D-01 12 10601974 10601974 G A KLRC1 Silent p.G117G 0.17 TCGA-VQ-AA6D-01 12 108924041 108924041 G A SART3 Missense_Mutation p.A598V 0.09 tolerated(0.2) benign(0.005) TCGA-VQ-AA6D-01 12 109629688 109629688 G A ACACB Missense_Mutation p.G778R 0.32 deleterious(0) possibly_damaging(0.843) TCGA-VQ-AA6D-01 12 110983853 110983853 T C PPTC7 Missense_Mutation p.D145G 0.23 tolerated(0.07) benign(0.3) TCGA-VQ-AA6D-01 12 112460157 112460157 G A ERP29 Missense_Mutation p.A163T 0.19 tolerated(0.6) benign(0.001) TCGA-VQ-AA6D-01 12 113379568 113379568 G A OAS3 Missense_Mutation p.S124N 0.09 tolerated(0.44) benign(0) TCGA-VQ-AA6D-01 12 113758901 113758901 G A SLC8B1 Missense_Mutation p.L108F 0.18 tolerated(0.14) benign(0.03) TCGA-VQ-AA6D-01 12 114395771 114395771 C A RBM19 Missense_Mutation p.G219V 0.10 tolerated(0.28) benign(0.001) TCGA-VQ-AA6D-01 12 118481127 118481127 G A WSB2 Missense_Mutation p.R80W 0.20 deleterious(0) possibly_damaging(0.803) TCGA-VQ-AA6D-01 12 120118200 120118200 A T PRKAB1 3'UTR 0.29 TCGA-VQ-AA6D-01 12 120651674 120651674 G T PXN Missense_Mutation p.L508M 0.17 deleterious(0.04) probably_damaging(0.983) TCGA-VQ-AA6D-01 12 120652745 120652745 G A PXN Silent p.C401C 0.25 TCGA-VQ-AA6D-01 12 124421596 124421596 C T CCDC92 3'UTR 0.41 TCGA-VQ-AA6D-01 12 124824699 124824699 C T NCOR2 Missense_Mutation p.R1847H 0.31 probably_damaging(0.977) TCGA-VQ-AA6D-01 12 124968233 124968233 C T NCOR2 Missense_Mutation p.R107H 0.58 unknown(0) TCGA-VQ-AA6D-01 12 125587570 125587570 T G AACS Missense_Mutation p.V237G 0.38 deleterious(0) probably_damaging(0.994) TCGA-VQ-AA6D-01 12 12871059 12871059 A C CDKN1B Missense_Mutation p.K96Q 0.15 deleterious(0.02) possibly_damaging(0.814) TCGA-VQ-AA6D-01 12 132549287 132549287 G A EP400 Silent p.A2803A 0.08 TCGA-VQ-AA6D-01 12 133780529 133780529 G A ZNF268 Missense_Mutation p.E753K 0.36 tolerated(0.45) possibly_damaging(0.596) TCGA-VQ-AA6D-01 12 15811017 15811017 T A EPS8 Missense_Mutation p.N366I 0.31 deleterious(0.01) benign(0.418) TCGA-VQ-AA6D-01 12 40707860 40707860 G A LRRK2 Silent p.V1541V 0.25 TCGA-VQ-AA6D-01 12 41419040 41419040 T G CNTN1 Missense_Mutation p.L871R 0.37 deleterious(0) probably_damaging(0.99) TCGA-VQ-AA6D-01 12 43777627 43777627 T G ADAMTS20 Missense_Mutation p.M1536L 0.23 tolerated(0.66) benign(0.001) TCGA-VQ-AA6D-01 12 49334817 49334817 A G ARF3 Missense_Mutation p.L21P 0.06 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-VQ-AA6D-01 12 51392999 51392999 A - SLC11A2 Frame_Shift_Del p.F240Lfs*19 0.17 TCGA-VQ-AA6D-01 12 53670436 53670436 C T ESPL1 Missense_Mutation p.P578L 0.25 tolerated(0.17) benign(0.009) TCGA-VQ-AA6D-01 12 55820374 55820374 G A OR6C76 Missense_Mutation p.A113T 0.06 tolerated_low_confidence(0.25) benign(0.05) TCGA-VQ-AA6D-01 12 56514974 56514974 C T ZC3H10 Missense_Mutation p.R210W 0.32 deleterious(0) probably_damaging(0.992) TCGA-VQ-AA6D-01 12 57081719 57081719 G T PTGES3 Intron 0.12 TCGA-VQ-AA6D-01 12 57424886 57424886 C T MYO1A Missense_Mutation p.A808T 0.17 tolerated(0.17) benign(0.102) TCGA-VQ-AA6D-01 12 57626297 57626297 G T SHMT2 Missense_Mutation p.R219L 0.14 deleterious(0.01) possibly_damaging(0.58) TCGA-VQ-AA6D-01 12 6153464 6153464 G - VWF Frame_Shift_Del p.P812Rfs*31 0.38 TCGA-VQ-AA6D-01 12 64377697 64377697 A C SRGAP1 Intron 0.19 TCGA-VQ-AA6D-01 12 68710032 68710032 A C MDM1 Missense_Mutation p.V336G 0.34 deleterious(0) probably_damaging(1) TCGA-VQ-AA6D-01 12 71139789 71139789 C T PTPRR Silent p.S272S 0.39 TCGA-VQ-AA6D-01 12 7301638 7301638 G A CLSTN3 Missense_Mutation p.A640T 0.26 tolerated(0.13) benign(0.034) TCGA-VQ-AA6D-01 12 7362793 7362793 C A PEX5 Missense_Mutation p.L647I 0.13 tolerated(0.34) possibly_damaging(0.892) TCGA-VQ-AA6D-01 12 79689846 79689846 C G SYT1 Intron 0.12 TCGA-VQ-AA6D-01 12 94575277 94575277 A C PLXNC1 Missense_Mutation p.K420T 0.28 tolerated(0.08) benign(0.091) TCGA-VQ-AA6D-01 12 96422868 96422868 C T LTA4H Silent p.S85S 0.18 TCGA-VQ-AA6D-01 13 100191809 100191809 G A TM9SF2 Missense_Mutation p.E276K 0.27 tolerated(0.57) benign(0.022) TCGA-VQ-AA6D-01 13 108882663 108882663 G A ABHD13 3'UTR 0.33 TCGA-VQ-AA6D-01 13 111372014 111372014 C T ING1 Missense_Mutation p.A335V 0.19 tolerated(0.08) possibly_damaging(0.717) TCGA-VQ-AA6D-01 13 111996447 111996447 G A TEX29 Missense_Mutation p.E145K 0.10 tolerated(0.23) possibly_damaging(0.486) TCGA-VQ-AA6D-01 13 115004481 115004481 G A CDC16 Missense_Mutation p.R73H 0.26 tolerated(0.19) benign(0.087) TCGA-VQ-AA6D-01 13 20716729 20716729 G A GJA3 Silent p.G233G 0.13 TCGA-VQ-AA6D-01 13 21557659 21557659 A G LATS2 Missense_Mutation p.V729A 0.37 deleterious(0) probably_damaging(0.997) TCGA-VQ-AA6D-01 13 28964202 28964202 G A FLT1 Missense_Mutation p.P567L 0.35 deleterious(0) probably_damaging(1) TCGA-VQ-AA6D-01 13 29287061 29287061 A - SLC46A3 Frame_Shift_Del p.F272Lfs*3 0.31 TCGA-VQ-AA6D-01 13 39425118 39425118 C T FREM2 Silent p.D2205D 0.21 TCGA-VQ-AA6D-01 13 45008970 45008970 A C TSC22D1 Missense_Mutation p.V1005G 0.24 deleterious(0) probably_damaging(0.999) TCGA-VQ-AA6D-01 13 46679098 46679098 C T CPB2 Missense_Mutation p.C16Y 0.31 tolerated(0.66) benign(0.002) TCGA-VQ-AA6D-01 13 47470070 47470070 G A HTR2A 5'UTR 0.10 TCGA-VQ-AA6D-01 13 52604000 52604002 CTC - UTP14C In_Frame_Del p.L355del 0.16 TCGA-VQ-AA6D-01 13 77642767 77642767 T C MYCBP2 Missense_Mutation p.Q3997R 0.41 probably_damaging(0.921) TCGA-VQ-AA6D-01 13 77742650 77742650 C A MYCBP2 Missense_Mutation p.Q1971H 0.26 possibly_damaging(0.641) TCGA-VQ-AA6D-01 13 77763132 77763132 T G MYCBP2 Missense_Mutation p.E1364A 0.36 probably_damaging(0.968) TCGA-VQ-AA6D-01 13 78470625 78470625 T A EDNRB 3'UTR 0.47 TCGA-VQ-AA6D-01 13 96239925 96239925 C T DZIP1 Missense_Mutation p.A696T 0.06 tolerated(0.91) benign(0.007) TCGA-VQ-AA6D-01 13 99043105 99043107 AGG - FARP1 In_Frame_Del p.G355del 0.12 TCGA-VQ-AA6D-01 14 100793581 100793581 T G SLC25A47 Silent p.S67S 0.09 TCGA-VQ-AA6D-01 14 101506047 101506047 A G MIR376C RNA 0.07 TCGA-VQ-AA6D-01 14 102514279 102514279 C T DYNC1H1 Missense_Mutation p.R4378W 0.07 probably_damaging(0.978) TCGA-VQ-AA6D-01 14 102843276 102843276 A G TECPR2 Missense_Mutation p.E73G 0.24 deleterious(0) possibly_damaging(0.721) TCGA-VQ-AA6D-01 14 105409327 105409327 G A AHNAK2 Missense_Mutation p.A4154V 0.05 probably_damaging(0.99) TCGA-VQ-AA6D-01 14 106321648 106321648 T C IGHM Missense_Mutation p.T196A 0.15 deleterious(0.02) possibly_damaging(0.907) TCGA-VQ-AA6D-01 14 20823008 20823008 T G PARP2 Silent p.S281S 0.28 TCGA-VQ-AA6D-01 14 21549985 21549985 G A ARHGEF40 Silent p.S986S 0.22 TCGA-VQ-AA6D-01 14 21769214 21769214 G A RPGRIP1 Missense_Mutation p.R103H 0.38 deleterious(0.01) benign(0.386) TCGA-VQ-AA6D-01 14 22102344 22102344 T A OR10G2 Missense_Mutation p.I219F 0.35 deleterious(0.01) probably_damaging(0.978) TCGA-VQ-AA6D-01 14 23016671 23016671 G A TRAC Missense_Mutation p.A76T 0.19 tolerated(1) benign(0.014) TCGA-VQ-AA6D-01 14 23240671 23240671 C T OXA1L Silent p.N464N 0.08 TCGA-VQ-AA6D-01 14 23415773 23415773 C T HAUS4 Silent p.K351K 0.08 TCGA-VQ-AA6D-01 14 23416833 23416833 G A HAUS4 Silent p.C272C 0.10 TCGA-VQ-AA6D-01 14 23548946 23548946 G A ACIN1 Missense_Mutation p.S591L 0.07 probably_damaging(0.983) TCGA-VQ-AA6D-01 14 24031519 24031519 T C AP1G2 Missense_Mutation p.T536A 0.14 tolerated(0.08) probably_damaging(0.998) TCGA-VQ-AA6D-01 14 31354220 31354220 G A COCH Intron 0.35 TCGA-VQ-AA6D-01 14 31774323 31774323 C A RP11-596D21.1 3'Flank 0.34 TCGA-VQ-AA6D-01 14 32295867 32295867 G A NUBPL Missense_Mutation p.A214T 0.08 deleterious(0) probably_damaging(0.994) TCGA-VQ-AA6D-01 14 35593402 35593402 G A KIAA0391 Silent p.E317E 0.09 TCGA-VQ-AA6D-01 14 38724259 38724259 G A CLEC14A Silent p.V323V 0.16 TCGA-VQ-AA6D-01 14 39651062 39651062 C T PNN Missense_Mutation p.R717C 0.07 deleterious_low_confidence(0) unknown(0) TCGA-VQ-AA6D-01 14 39716910 39716910 T G MIA2 Missense_Mutation p.F378V 0.11 deleterious(0) probably_damaging(0.999) TCGA-VQ-AA6D-01 14 50789243 50789243 G A ATP5S Missense_Mutation p.R56H 0.33 deleterious(0.02) probably_damaging(0.93) TCGA-VQ-AA6D-01 14 51210213 51210213 G A NIN Missense_Mutation p.A1741V 0.17 tolerated(0.08) benign(0.009) TCGA-VQ-AA6D-01 14 55168961 55168961 G C SAMD4A Silent p.L126L 0.60 TCGA-VQ-AA6D-01 14 62212433 62212433 G A HIF1A Missense_Mutation p.D767N 0.10 tolerated(0.16) benign(0.006) TCGA-VQ-AA6D-01 14 63483587 63483587 A C KCNH5 Nonsense_Mutation p.Y53* 0.27 TCGA-VQ-AA6D-01 14 64676699 64676699 G T SYNE2 Nonsense_Mutation p.E6194* 0.06 TCGA-VQ-AA6D-01 14 70480139 70480139 G A SMOC1 Missense_Mutation p.S326N 0.05 tolerated(0.1) probably_damaging(0.997) TCGA-VQ-AA6D-01 14 73989398 73989398 T A HEATR4 Silent p.P153P 0.11 TCGA-VQ-AA6D-01 14 74769685 74769685 G T ABCD4 5'UTR 0.25 TCGA-VQ-AA6D-01 14 77908979 77908979 G A VIPAS39 Nonsense_Mutation p.R220* 0.06 TCGA-VQ-AA6D-01 14 88938690 88938690 T C PTPN21 Silent p.E923E 0.10 TCGA-VQ-AA6D-01 14 89628864 89628864 G A FOXN3 Missense_Mutation p.A456V 0.06 deleterious(0) possibly_damaging(0.703) TCGA-VQ-AA6D-01 14 91755479 91755479 G A CCDC88C Missense_Mutation p.R1471C 0.07 deleterious(0.02) benign(0.005) TCGA-VQ-AA6D-01 14 93761249 93761249 G A BTBD7 Silent p.C39C 0.22 TCGA-VQ-AA6D-01 14 96993782 96993782 C T PAPOLA Missense_Mutation p.A116V 0.10 deleterious(0.04) benign(0.184) TCGA-VQ-AA6D-01 15 100331220 100331220 G A AC090825.1 5'Flank 0.09 TCGA-VQ-AA6D-01 15 100533337 100533337 G A ADAMTS17 Silent p.C955C 0.40 TCGA-VQ-AA6D-01 15 100996141 100996141 C T CERS3 Missense_Mutation p.G319D 0.16 deleterious(0) possibly_damaging(0.609) TCGA-VQ-AA6D-01 15 20644034 20644034 T C HERC2P3 RNA 0.31 TCGA-VQ-AA6D-01 15 22947044 22947044 G A CYFIP1 Silent p.T439T 0.49 TCGA-VQ-AA6D-01 15 25331708 25331708 G T SNORD116-19 RNA 0.32 TCGA-VQ-AA6D-01 15 25440073 25440073 G C SNORD115-14 RNA 0.05 TCGA-VQ-AA6D-01 15 25953225 25953225 A G ATP10A Missense_Mutation p.C825R 0.33 tolerated(0.53) benign(0) TCGA-VQ-AA6D-01 15 28408358 28408358 G A HERC2 Missense_Mutation p.A3543V 0.06 benign(0.003) TCGA-VQ-AA6D-01 15 31327807 31327807 A G TRPM1 Missense_Mutation p.L898P 0.12 tolerated(0.35) benign(0.003) TCGA-VQ-AA6D-01 15 37390263 37390263 G C MEIS2 Missense_Mutation p.H50Q 0.32 tolerated(0.31) benign(0.007) TCGA-VQ-AA6D-01 15 41106259 41106259 G A ZFYVE19 Missense_Mutation p.R443H 0.06 deleterious(0) probably_damaging(0.981) TCGA-VQ-AA6D-01 15 41108428 41108428 A G PPP1R14D Missense_Mutation p.L132P 0.08 tolerated_low_confidence(0.08) probably_damaging(0.928) TCGA-VQ-AA6D-01 15 44066421 44066421 C T ELL3 Missense_Mutation p.A333T 0.05 tolerated(0.06) benign(0.358) TCGA-VQ-AA6D-01 15 44084508 44084508 C A SERF2 5'Flank 0.25 TCGA-VQ-AA6D-01 15 44853225 44853225 G T EIF3J Missense_Mutation p.A219S 0.16 tolerated(0.14) possibly_damaging(0.869) TCGA-VQ-AA6D-01 15 45453118 45453118 C T DUOX1 Silent p.G1262G 0.09 TCGA-VQ-AA6D-01 15 48499930 48499930 A G SLC12A1 Missense_Mutation p.N5S 0.41 tolerated_low_confidence(0.14) benign(0.001) TCGA-VQ-AA6D-01 15 50534576 50534576 T G HDC Missense_Mutation p.M624L 0.05 tolerated_low_confidence(0.45) benign(0.001) TCGA-VQ-AA6D-01 15 53815448 53815448 C T WDR72 Missense_Mutation p.D1074N 0.07 deleterious(0.01) possibly_damaging(0.884) TCGA-VQ-AA6D-01 15 54025348 54025348 T G WDR72 5'UTR 0.35 TCGA-VQ-AA6D-01 15 54793165 54793165 A C UNC13C Silent p.R1764R 0.29 TCGA-VQ-AA6D-01 15 56924230 56924230 G A ZNF280D Silent p.S802S 0.40 TCGA-VQ-AA6D-01 15 57820855 57820855 C T CGNL1 Missense_Mutation p.R1015C 0.09 tolerated(0.1) benign(0.006) TCGA-VQ-AA6D-01 15 58357767 58357767 A G ALDH1A2 Missense_Mutation p.S28P 0.18 tolerated(0.37) benign(0.053) TCGA-VQ-AA6D-01 15 59910767 59910767 T C GCNT3 Silent p.C110C 0.33 TCGA-VQ-AA6D-01 15 63029230 63029230 C T TLN2 Missense_Mutation p.A1171V 0.47 tolerated(0.17) benign(0.066) TCGA-VQ-AA6D-01 15 63908798 63908798 C T HERC1 Missense_Mutation p.R4591H 0.10 probably_damaging(0.999) TCGA-VQ-AA6D-01 15 64418329 64418329 A G SNX1 Missense_Mutation p.S188G 0.05 deleterious(0) probably_damaging(0.998) TCGA-VQ-AA6D-01 15 64673220 64673220 G A KIAA0101 Missense_Mutation p.P22S 0.07 deleterious(0.02) probably_damaging(1) TCGA-VQ-AA6D-01 15 65369220 65369220 G A KBTBD13 Missense_Mutation p.A23T 0.42 tolerated(0.37) benign(0.01) TCGA-VQ-AA6D-01 15 70347546 70347546 C T TLE3 Missense_Mutation p.A477T 0.04 deleterious(0) probably_damaging(0.996) TCGA-VQ-AA6D-01 15 74572419 74572419 A G CCDC33 Missense_Mutation p.Y292C 0.21 tolerated(0.07) probably_damaging(0.917) TCGA-VQ-AA6D-01 15 75979969 75979969 T C CSPG4 Missense_Mutation p.D1146G 0.09 deleterious(0.01) possibly_damaging(0.493) TCGA-VQ-AA6D-01 15 75982491 75982491 C T CSPG4 Silent p.T305T 0.11 TCGA-VQ-AA6D-01 15 77907717 77907717 C A LINGO1 Missense_Mutation p.D178Y 0.23 deleterious(0) probably_damaging(0.941) TCGA-VQ-AA6D-01 15 83335619 83335619 G T AP3B2 Silent p.R578R 0.05 TCGA-VQ-AA6D-01 15 83349401 83349401 C T AP3B2 Missense_Mutation p.R293Q 0.42 deleterious(0.02) benign(0.069) TCGA-VQ-AA6D-01 15 83931978 83931978 C T BNC1 Silent p.Q675Q 0.40 TCGA-VQ-AA6D-01 15 86278795 86278795 C T AKAP13 Silent p.G2486G 0.24 TCGA-VQ-AA6D-01 15 90163041 90163042 AA - TICRR Frame_Shift_Del p.R1042Sfs*8 0.29 TCGA-VQ-AA6D-01 15 91422917 91422917 C T FURIN Missense_Mutation p.R391W 0.15 deleterious(0) probably_damaging(1) TCGA-VQ-AA6D-01 15 91500943 91500943 G C RCCD1 Missense_Mutation p.V223L 0.13 tolerated(0.09) benign(0.023) TCGA-VQ-AA6D-01 16 1260792 1260792 G A CACNA1H Silent p.V1348V 0.30 TCGA-VQ-AA6D-01 16 14755821 14755821 C A BFAR Missense_Mutation p.L286M 0.14 tolerated(0.1) possibly_damaging(0.893) TCGA-VQ-AA6D-01 16 1605031 1605031 G A TMEM204 3'UTR 0.30 TCGA-VQ-AA6D-01 16 21156687 21156687 C T DNAH3 Missense_Mutation p.R88H 0.13 tolerated_low_confidence(0.17) benign(0.001) TCGA-VQ-AA6D-01 16 2237064 2237064 G A CASKIN1 Missense_Mutation p.A282V 0.06 probably_damaging(0.973) TCGA-VQ-AA6D-01 16 23847659 23847659 G A PRKCB Missense_Mutation p.D55N 0.06 deleterious(0) possibly_damaging(0.618) TCGA-VQ-AA6D-01 16 24196829 24196829 G A PRKCB Missense_Mutation p.E555K 0.47 deleterious(0.02) possibly_damaging(0.682) TCGA-VQ-AA6D-01 16 28602244 28602244 G A CCDC101 Silent p.A251A 0.67 TCGA-VQ-AA6D-01 16 28846953 28846953 G A ATXN2L Silent p.P923P 0.16 TCGA-VQ-AA6D-01 16 30779493 30779493 A C RNF40 Missense_Mutation p.S541R 0.08 tolerated(0.52) benign(0.019) TCGA-VQ-AA6D-01 16 31138664 31138664 G A KAT8 Missense_Mutation p.R224H 0.12 deleterious(0.03) benign(0.12) TCGA-VQ-AA6D-01 16 31144228 31144228 G A PRSS8 Silent p.L105L 0.69 TCGA-VQ-AA6D-01 16 31475729 31475729 C A ARMC5 Missense_Mutation p.S462Y 0.80 deleterious(0) probably_damaging(0.971) TCGA-VQ-AA6D-01 16 3170062 3170063 - CG ZNF205 Frame_Shift_Ins p.T469Afs*69 0.24 TCGA-VQ-AA6D-01 16 46629539 46629539 C T SHCBP1 Silent p.Q463Q 0.19 TCGA-VQ-AA6D-01 16 49313377 49313377 C T CBLN1 Missense_Mutation p.G174R 0.11 deleterious(0) probably_damaging(0.997) TCGA-VQ-AA6D-01 16 615197 615197 G T C16orf11 Missense_Mutation p.D536Y 0.16 deleterious(0) possibly_damaging(0.814) TCGA-VQ-AA6D-01 16 61687572 61687578 ACCCCAG TCCCAA CDH8 Frame_Shift_Del p.G780Dfs*25 0.11 TCGA-VQ-AA6D-01 16 68330713 68330713 G T SLC7A6 Missense_Mutation p.A485S 0.20 tolerated(0.6) benign(0.014) TCGA-VQ-AA6D-01 16 69680965 69680965 C T NFAT5 Silent p.G96G 0.19 TCGA-VQ-AA6D-01 16 71571374 71571374 A C CHST4 Missense_Mutation p.K265T 0.15 tolerated(0.05) benign(0.031) TCGA-VQ-AA6D-01 16 72153263 72153263 C T PMFBP1 Intron 0.11 TCGA-VQ-AA6D-01 16 72153300 72153300 A T PMFBP1 Intron 0.14 TCGA-VQ-AA6D-01 16 72159995 72159995 C T PMFBP1 Missense_Mutation p.A709T 0.13 tolerated(0.54) benign(0.009) TCGA-VQ-AA6D-01 16 75268800 75268800 T C BCAR1 Missense_Mutation p.Y712C 0.41 deleterious(0) probably_damaging(0.998) TCGA-VQ-AA6D-01 16 82033376 82033376 G A SDR42E1 Silent p.G174G 0.40 TCGA-VQ-AA6D-01 16 84271046 84271046 G T KCNG4 Missense_Mutation p.H16N 0.18 tolerated_low_confidence(0.84) benign(0.023) TCGA-VQ-AA6D-01 16 85691090 85691092 AGA - GSE1 In_Frame_Del p.K508del 0.44 TCGA-VQ-AA6D-01 16 89805217 89805217 G A FANCA Intron 0.70 TCGA-VQ-AA6D-01 16 9943707 9943707 C G GRIN2A Missense_Mutation p.E412Q 0.12 deleterious(0) probably_damaging(0.997) TCGA-VQ-AA6D-01 17 1003888 1003888 C T ABR Missense_Mutation p.A112T 0.11 tolerated(0.26) probably_damaging(0.999) TCGA-VQ-AA6D-01 17 1657464 1657464 A G SERPINF2 Missense_Mutation p.Q371R 0.67 tolerated(0.14) benign(0.009) TCGA-VQ-AA6D-01 17 17124765 17124765 C G FLCN Intron 0.62 TCGA-VQ-AA6D-01 17 17701073 17701073 G A RAI1 Missense_Mutation p.R1604Q 0.11 tolerated(0.15) benign(0.004) TCGA-VQ-AA6D-01 17 18022683 18022683 T C MYO15A Missense_Mutation p.F190S 0.69 probably_damaging(0.972) TCGA-VQ-AA6D-01 17 18226023 18226023 G A SMCR8 Missense_Mutation p.R818H 0.14 tolerated(0.16) probably_damaging(0.939) TCGA-VQ-AA6D-01 17 18333050 18333050 C T KRT17P2 RNA 0.35 TCGA-VQ-AA6D-01 17 2233607 2233607 A G TSR1 Intron 0.68 TCGA-VQ-AA6D-01 17 2597206 2597206 G A CLUH Silent p.G1034G 0.22 TCGA-VQ-AA6D-01 17 27017169 27017169 C T SUPT6H Missense_Mutation p.R1138W 0.11 deleterious(0) probably_damaging(0.999) TCGA-VQ-AA6D-01 17 27209641 27209641 C T FLOT2 Missense_Mutation p.A139T 0.36 tolerated(0.06) benign(0.17) TCGA-VQ-AA6D-01 17 27898679 27898679 C A TP53I13 Missense_Mutation p.A85D 0.40 deleterious(0) probably_damaging(0.999) TCGA-VQ-AA6D-01 17 33319567 33319567 C A LIG3 Silent p.A437A 0.25 TCGA-VQ-AA6D-01 17 33446661 33446661 G A RAD51D 5'UTR 0.10 TCGA-VQ-AA6D-01 17 33586271 33586271 A G SLFN5 Missense_Mutation p.N188D 0.07 tolerated(0.24) benign(0.306) TCGA-VQ-AA6D-01 17 37226146 37226146 C T PLXDC1 Missense_Mutation p.G449D 0.38 tolerated(0.77) possibly_damaging(0.448) TCGA-VQ-AA6D-01 17 39620454 39620454 A G KRT32 Missense_Mutation p.M291T 0.33 tolerated(1) benign(0.033) TCGA-VQ-AA6D-01 17 39727630 39727632 ATA - KRT9 In_Frame_Del p.Y205del 0.20 TCGA-VQ-AA6D-01 17 41143392 41143392 G A RUNDC1 Missense_Mutation p.A501T 0.10 tolerated(0.23) possibly_damaging(0.835) TCGA-VQ-AA6D-01 17 42248460 42248460 T C ASB16 Splice_Site p.X101_splice 0.20 TCGA-VQ-AA6D-01 17 43012720 43012720 G - KIF18B Frame_Shift_Del p.G127Afs*5 0.09 TCGA-VQ-AA6D-01 17 45008545 45008545 C - GOSR2 Frame_Shift_Del p.P60Lfs*14 0.19 TCGA-VQ-AA6D-01 17 46128847 46128847 G A NFE2L1 Missense_Mutation p.A123T 0.23 tolerated(0.53) benign(0.001) TCGA-VQ-AA6D-01 17 46190705 46190705 C T SNX11 Missense_Mutation p.R58C 0.16 deleterious(0) probably_damaging(0.982) TCGA-VQ-AA6D-01 17 48265343 48265343 C - COL1A1 Frame_Shift_Del p.G1088Dfs*20 0.23 TCGA-VQ-AA6D-01 17 48268238 48268238 G A COL1A1 Silent p.G761G 0.18 TCGA-VQ-AA6D-01 17 48627927 48627927 G A SPATA20 Missense_Mutation p.A377T 0.07 tolerated(0.05) probably_damaging(0.948) TCGA-VQ-AA6D-01 17 48695621 48695621 C T CACNA1G Missense_Mutation p.H1782Y 0.14 tolerated(0.11) probably_damaging(0.988) TCGA-VQ-AA6D-01 17 4880489 4880489 T G CAMTA2 Splice_Site p.X612_splice 0.16 TCGA-VQ-AA6D-01 17 57992008 57992008 C T RPS6KB1 Nonsense_Mutation p.R109* 0.24 TCGA-VQ-AA6D-01 17 61607569 61607569 G A KCNH6 Missense_Mutation p.R142H 0.43 tolerated(0.06) benign(0.009) TCGA-VQ-AA6D-01 17 61950680 61950680 G A CSH2 Silent p.L10L 0.11 TCGA-VQ-AA6D-01 17 63206718 63206718 A G RGS9 Missense_Mutation p.T468A 0.14 deleterious(0) possibly_damaging(0.695) TCGA-VQ-AA6D-01 17 64880791 64880791 A G CACNG5 Intron 0.04 TCGA-VQ-AA6D-01 17 66551814 66551814 C T FAM20A Missense_Mutation p.A159T 0.07 tolerated(0.57) benign(0.117) TCGA-VQ-AA6D-01 17 67014664 67014664 T G ABCA9 Missense_Mutation p.E886A 0.07 tolerated(0.97) benign(0.002) TCGA-VQ-AA6D-01 17 6927068 6927068 C T BCL6B Silent p.G26G 0.56 TCGA-VQ-AA6D-01 17 7010364 7010364 C T ASGR2 Silent p.Q206Q 0.69 TCGA-VQ-AA6D-01 17 71204484 71204484 A T COG1 Missense_Mutation p.D946V 0.09 deleterious(0) possibly_damaging(0.873) TCGA-VQ-AA6D-01 17 71394314 71394314 G A SDK2 Missense_Mutation p.R1072C 0.30 deleterious(0.02) probably_damaging(0.997) TCGA-VQ-AA6D-01 17 73235978 73235978 A G GGA3 Missense_Mutation p.L492S 0.50 tolerated(0.48) benign(0.004) TCGA-VQ-AA6D-01 17 73732383 73732383 A G ITGB4 Silent p.G592G 0.10 TCGA-VQ-AA6D-01 17 73947572 73947572 A G ACOX1 Missense_Mutation p.V344A 0.08 tolerated(0.47) benign(0.013) TCGA-VQ-AA6D-01 17 7462503 7462503 G A TNFSF13 Silent p.L49L 0.22 TCGA-VQ-AA6D-01 17 78320114 78320114 C T RNF213 Missense_Mutation p.A2660V 0.15 benign(0.004) TCGA-VQ-AA6D-01 17 78704368 78704368 G A RPTOR Silent p.T172T 0.06 TCGA-VQ-AA6D-01 17 79094122 79094122 C T AATK Missense_Mutation p.R1205H 0.16 tolerated(0.2) probably_damaging(0.939) TCGA-VQ-AA6D-01 17 8077894 8077894 G T TMEM107 Missense_Mutation p.F105L 0.17 tolerated(0.12) benign(0.2) TCGA-VQ-AA6D-01 18 21112165 21112165 G A NPC1 3'UTR 0.40 TCGA-VQ-AA6D-01 18 21181151 21181151 G C ANKRD29 3'UTR 0.39 TCGA-VQ-AA6D-01 18 29625690 29625690 C T RNF125 Missense_Mutation p.P167S 0.05 tolerated(0.71) benign(0.005) TCGA-VQ-AA6D-01 18 34852993 34852993 A G CELF4 Missense_Mutation p.M312T 0.20 tolerated(0.22) benign(0.129) TCGA-VQ-AA6D-01 18 42643205 42643205 A C SETBP1 Missense_Mutation p.T1445P 0.46 deleterious(0) probably_damaging(0.996) TCGA-VQ-AA6D-01 18 47107830 47107830 T A LIPG Missense_Mutation p.L280H 0.43 deleterious(0) probably_damaging(1) TCGA-VQ-AA6D-01 18 48333160 48333160 C T MRO Missense_Mutation p.A68T 0.07 tolerated(0.42) possibly_damaging(0.772) TCGA-VQ-AA6D-01 18 5291725 5291725 T C ZBTB14 Missense_Mutation p.D161G 0.18 tolerated(0.4) benign(0.001) TCGA-VQ-AA6D-01 18 54424017 54424017 C T WDR7 Silent p.G731G 0.12 TCGA-VQ-AA6D-01 19 11473346 11473346 C T DKFZP761J1410 Missense_Mutation p.A249V 0.14 deleterious(0.02) benign(0.063) TCGA-VQ-AA6D-01 19 11688068 11688068 G A ACP5 Missense_Mutation p.A22V 0.17 tolerated(0.15) benign(0) TCGA-VQ-AA6D-01 19 12087981 12087981 T - ZNF763 Splice_Site p.X47_splice 0.09 TCGA-VQ-AA6D-01 19 14675793 14675793 G A TECR Missense_Mutation p.A199T 0.36 tolerated(0.14) benign(0.005) TCGA-VQ-AA6D-01 19 1483675 1483675 G A PCSK4 Silent p.C455C 0.31 TCGA-VQ-AA6D-01 19 16884049 16884049 C A NWD1 Nonsense_Mutation p.C841* 0.16 TCGA-VQ-AA6D-01 19 1796715 1796715 C T ATP8B3 Missense_Mutation p.R583H 0.19 deleterious(0.05) benign(0.004) TCGA-VQ-AA6D-01 19 18702978 18702978 A T C19orf60 Missense_Mutation p.E198D 0.10 deleterious(0.02) probably_damaging(0.998) TCGA-VQ-AA6D-01 19 19371746 19371746 G A HAPLN4 Silent p.G120G 0.16 TCGA-VQ-AA6D-01 19 19605126 19605126 C T GATAD2A Silent p.T186T 0.38 TCGA-VQ-AA6D-01 19 22156828 22156828 A C ZNF208 Silent p.A336A 0.23 TCGA-VQ-AA6D-01 19 22156912 22156912 A C ZNF208 Silent p.A308A 0.27 TCGA-VQ-AA6D-01 19 37904777 37904777 T G ZNF569 Missense_Mutation p.Q261H 0.71 tolerated(0.12) possibly_damaging(0.473) TCGA-VQ-AA6D-01 19 38074882 38074882 C G ZNF571 Silent p.L42L 0.07 TCGA-VQ-AA6D-01 19 38949916 38949916 C T RYR1 Silent p.V766V 0.21 TCGA-VQ-AA6D-01 19 38993310 38993310 G C RYR1 Missense_Mutation p.R2593P 0.54 benign(0.152) TCGA-VQ-AA6D-01 19 39090567 39090568 GA - MAP4K1 Frame_Shift_Del p.S556Rfs*10 0.38 TCGA-VQ-AA6D-01 19 40520998 40520998 A C ZNF546 Missense_Mutation p.K607N 0.08 deleterious(0.01) possibly_damaging(0.461) TCGA-VQ-AA6D-01 19 41354554 41354554 G A CYP2A6 Missense_Mutation p.A153V 0.25 benign(0.305) TCGA-VQ-AA6D-01 19 41387652 41387652 C A CYP2A7 Missense_Mutation p.S62I 0.11 deleterious(0.01) possibly_damaging(0.669) TCGA-VQ-AA6D-01 19 41515256 41515256 G A CYP2B6 Missense_Mutation p.A260T 0.07 tolerated(0.09) benign(0.007) TCGA-VQ-AA6D-01 19 41932517 41932517 G T B3GNT8 Missense_Mutation p.A56D 0.65 tolerated(0.11) benign(0.274) TCGA-VQ-AA6D-01 19 42584599 42584599 G A ZNF574 Missense_Mutation p.R614H 0.10 deleterious(0.04) probably_damaging(0.954) TCGA-VQ-AA6D-01 19 43244484 43244484 A G PSG3 Missense_Mutation p.L18P 0.13 deleterious(0) possibly_damaging(0.886) TCGA-VQ-AA6D-01 19 43430837 43430837 A G PSG7 Silent p.N247N 0.11 TCGA-VQ-AA6D-01 19 43709636 43709636 A G PSG4 Missense_Mutation p.V18A 0.10 deleterious(0) benign(0.089) TCGA-VQ-AA6D-01 19 44501450 44501450 A - ZNF155 Frame_Shift_Del p.K493Nfs*44 0.12 TCGA-VQ-AA6D-01 19 45856520 45856520 C T ERCC2 Missense_Mutation p.A580T 0.41 deleterious(0) probably_damaging(0.996) TCGA-VQ-AA6D-01 19 47204162 47204162 C T PRKD2 Missense_Mutation p.A339T 0.16 tolerated(0.57) benign(0.041) TCGA-VQ-AA6D-01 19 47844744 47844744 C T C5AR2 Missense_Mutation p.R230C 0.70 tolerated(0.11) benign(0.005) TCGA-VQ-AA6D-01 19 51132585 51132585 C T SYT3 Missense_Mutation p.R416H 0.64 deleterious(0.02) benign(0.083) TCGA-VQ-AA6D-01 19 5133956 5133957 TC - KDM4B Frame_Shift_Del p.L658Afs*42 0.47 TCGA-VQ-AA6D-01 19 53856190 53856190 A G ZNF845 Silent p.K754K 0.56 TCGA-VQ-AA6D-01 19 54377168 54377168 T A MYADM Missense_Mutation p.S129T 0.18 deleterious(0.01) benign(0.155) TCGA-VQ-AA6D-01 19 54803292 54803292 C G LILRA3 Missense_Mutation p.A129P 0.17 deleterious(0) probably_damaging(0.99) TCGA-VQ-AA6D-01 19 55344191 55344191 C T KIR3DL1 3'Flank 0.24 TCGA-VQ-AA6D-01 19 56206572 56206572 G A EPN1 Silent p.T613T 0.27 TCGA-VQ-AA6D-01 19 5657306 5657306 T A SAFB Missense_Mutation p.S604T 0.59 tolerated(0.09) possibly_damaging(0.791) TCGA-VQ-AA6D-01 19 57061947 57061947 C T ZFP28 Nonsense_Mutation p.R291* 0.21 TCGA-VQ-AA6D-01 19 57325689 57325689 A G PEG3 Missense_Mutation p.V1374A 0.20 tolerated(0.6) benign(0.038) TCGA-VQ-AA6D-01 19 57931098 57931098 A G AC003002.6 Missense_Mutation p.T92A 0.09 tolerated(0.06) possibly_damaging(0.469) TCGA-VQ-AA6D-01 19 58639959 58639960 - A ZNF329 Frame_Shift_Ins p.L304Ffs*13 0.11 TCGA-VQ-AA6D-01 19 6710785 6710785 C T C3 Silent p.L517L 0.15 TCGA-VQ-AA6D-01 19 7999006 7999006 C A TIMM44 Missense_Mutation p.G171C 0.30 deleterious(0) probably_damaging(0.976) TCGA-VQ-AA6D-01 19 8122800 8122800 T C CCL25 Silent p.N147N 0.13 TCGA-VQ-AA6D-01 19 9063986 9063986 C T MUC16 Silent p.R7820R 0.51 TCGA-VQ-AA6D-01 1 10363658 10363658 C T KIF1B Intron 0.16 TCGA-VQ-AA6D-01 1 10510358 10510358 C T CORT Silent p.G26G 0.19 TCGA-VQ-AA6D-01 1 110582125 110582125 A G STRIP1 Missense_Mutation p.N190S 0.23 tolerated(0.27) benign(0.187) TCGA-VQ-AA6D-01 1 112524965 112524965 G A KCND3 Silent p.I128I 0.33 TCGA-VQ-AA6D-01 1 113057604 113057604 C T WNT2B Silent p.G97G 0.38 TCGA-VQ-AA6D-01 1 113255571 113255571 C T PPM1J Missense_Mutation p.R175H 0.09 tolerated(0.65) benign(0.005) TCGA-VQ-AA6D-01 1 114969901 114969901 G A TRIM33 Missense_Mutation p.R440C 0.05 deleterious(0.03) benign(0.066) TCGA-VQ-AA6D-01 1 116930005 116930005 T G ATP1A1 Missense_Mutation p.C93W 0.09 deleterious(0) probably_damaging(0.983) TCGA-VQ-AA6D-01 1 120056925 120056925 C T HSD3B1 Missense_Mutation p.T260M 0.08 deleterious(0.01) possibly_damaging(0.902) TCGA-VQ-AA6D-01 1 120506295 120506295 T C NOTCH2 Missense_Mutation p.D606G 0.24 tolerated(0.24) benign(0.02) TCGA-VQ-AA6D-01 1 12836065 12836065 G A PRAMEF12 Missense_Mutation p.A223T 0.14 tolerated(0.12) probably_damaging(0.982) TCGA-VQ-AA6D-01 1 1372688 1372689 - C VWA1 Frame_Shift_Ins p.M155Hfs*43 0.33 TCGA-VQ-AA6D-01 1 144828545 144828545 A T NBPF9 Missense_Mutation p.N605Y 0.22 deleterious(0.02) benign(0.013) TCGA-VQ-AA6D-01 1 151502448 151502448 A G CGN Missense_Mutation p.T724A 0.07 tolerated(0.34) benign(0.009) TCGA-VQ-AA6D-01 1 151739775 151739775 G A OAZ3 Silent p.S56S 0.10 TCGA-VQ-AA6D-01 1 152191290 152191290 C A HRNR Missense_Mutation p.G939W 0.38 unknown(0) TCGA-VQ-AA6D-01 1 152325101 152325101 T C FLG2 Missense_Mutation p.T1721A 0.11 benign(0.11) TCGA-VQ-AA6D-01 1 155727047 155727049 AAG - GON4L In_Frame_Del p.F1774del 0.14 TCGA-VQ-AA6D-01 1 155899501 155899501 A G KIAA0907 Splice_Site p.X128_splice 0.10 TCGA-VQ-AA6D-01 1 156503852 156503852 C A IQGAP3 Silent p.V1274V 0.06 TCGA-VQ-AA6D-01 1 156876462 156876462 A G PEAR1 Missense_Mutation p.D145G 0.29 tolerated(0.09) benign(0.009) TCGA-VQ-AA6D-01 1 15820494 15820494 A C CASP9 Missense_Mutation p.F351V 0.18 deleterious(0) possibly_damaging(0.899) TCGA-VQ-AA6D-01 1 158576578 158576578 C A OR10Z1 Missense_Mutation p.A117D 0.46 deleterious(0) benign(0.057) TCGA-VQ-AA6D-01 1 158632490 158632490 A C SPTA1 Splice_Site p.X822_splice 0.08 TCGA-VQ-AA6D-01 1 158655120 158655120 C T SPTA1 Silent p.G14G 0.32 TCGA-VQ-AA6D-01 1 159683313 159683313 C T CRP 3'UTR 0.41 TCGA-VQ-AA6D-01 1 161512764 161512764 C A FCGR3A 3'UTR 0.08 TCGA-VQ-AA6D-01 1 161987266 161987266 G A OLFML2B Missense_Mutation p.A157V 0.24 deleterious(0.02) possibly_damaging(0.7) TCGA-VQ-AA6D-01 1 163117218 163117218 C T RGS5 Missense_Mutation p.A158T 0.29 deleterious(0) probably_damaging(1) TCGA-VQ-AA6D-01 1 163131761 163131761 G T RGS5 Nonsense_Mutation p.S54* 0.39 TCGA-VQ-AA6D-01 1 16390086 16390086 G A FAM131C Missense_Mutation p.A23V 0.10 tolerated_low_confidence(0.08) benign(0.002) TCGA-VQ-AA6D-01 1 166927211 166927211 G A ILDR2 Silent p.F58F 0.36 TCGA-VQ-AA6D-01 1 169512195 169512195 A T F5 Missense_Mutation p.D711E 0.09 tolerated(0.39) benign(0.009) TCGA-VQ-AA6D-01 1 170015898 170015898 G A KIFAP3 Silent p.L92L 0.11 TCGA-VQ-AA6D-01 1 17323646 17323646 G A ATP13A2 Missense_Mutation p.T355M 0.28 deleterious(0) probably_damaging(0.998) TCGA-VQ-AA6D-01 1 175956140 175956140 C T RFWD2 Missense_Mutation p.R691Q 0.28 tolerated(0.3) benign(0.002) TCGA-VQ-AA6D-01 1 179077714 179077714 C G ABL2 Silent p.G896G 0.07 TCGA-VQ-AA6D-01 1 179077718 179077718 C G ABL2 Missense_Mutation p.G895A 0.08 tolerated_low_confidence(0.06) benign(0.141) TCGA-VQ-AA6D-01 1 179820321 179820322 TC - TOR1AIP2 Frame_Shift_Del p.E71Kfs*4 0.13 TCGA-VQ-AA6D-01 1 180772622 180772622 C T XPR1 Nonsense_Mutation p.R108* 0.16 TCGA-VQ-AA6D-01 1 181549778 181549778 T G CACNA1E Missense_Mutation p.C273G 0.16 deleterious(0) possibly_damaging(0.537) TCGA-VQ-AA6D-01 1 181767678 181767678 A G CACNA1E Missense_Mutation p.Q2217R 0.14 tolerated(0.52) benign(0.002) TCGA-VQ-AA6D-01 1 18807860 18807860 C T KLHDC7A Nonsense_Mutation p.Q129* 0.12 TCGA-VQ-AA6D-01 1 19565753 19565753 G A EMC1 Missense_Mutation p.A333V 0.11 tolerated(1) benign(0.021) TCGA-VQ-AA6D-01 1 1959701 1959701 T G GABRD Missense_Mutation p.F221V 0.36 tolerated(0.08) probably_damaging(0.996) TCGA-VQ-AA6D-01 1 200376872 200376872 G T ZNF281 Silent p.T654T 0.15 TCGA-VQ-AA6D-01 1 200824012 200824012 G A CAMSAP2 Silent p.T1297T 0.22 TCGA-VQ-AA6D-01 1 201195114 201195114 G A IGFN1 Missense_Mutation p.R3550H 0.40 benign(0.248) TCGA-VQ-AA6D-01 1 202394751 202394751 G A PPP1R12B Missense_Mutation p.R200H 0.19 deleterious(0) probably_damaging(0.92) TCGA-VQ-AA6D-01 1 204380291 204380291 A C PPP1R15B Missense_Mutation p.I83M 0.44 tolerated_low_confidence(0.19) benign(0.074) TCGA-VQ-AA6D-01 1 205312475 205312475 G A KLHDC8A Silent p.G86G 0.06 TCGA-VQ-AA6D-01 1 207751347 207751347 G A CR1 Missense_Mutation p.A1579T 0.06 deleterious(0.02) benign(0.202) TCGA-VQ-AA6D-01 1 210016890 210016890 C T DIEXF Missense_Mutation p.R626C 0.13 deleterious(0) probably_damaging(0.999) TCGA-VQ-AA6D-01 1 216896629 216896629 C T ESRRG 5'UTR 0.09 TCGA-VQ-AA6D-01 1 220970031 220970031 G A MARC1 Missense_Mutation p.A166T 0.10 deleterious(0.01) possibly_damaging(0.884) TCGA-VQ-AA6D-01 1 223178729 223178729 G A DISP1 Silent p.T1330T 0.15 TCGA-VQ-AA6D-01 1 225977020 225977020 G A SRP9 Missense_Mutation p.V74I 0.31 tolerated(0.08) possibly_damaging(0.56) TCGA-VQ-AA6D-01 1 226923286 226923286 C T ITPKB Missense_Mutation p.R625H 0.22 deleterious(0) probably_damaging(0.998) TCGA-VQ-AA6D-01 1 228335158 228335158 C T GUK1 Silent p.D122D 0.11 TCGA-VQ-AA6D-01 1 229580722 229580722 A G NUP133 Silent p.D1091D 0.12 TCGA-VQ-AA6D-01 1 229623329 229623329 A G NUP133 Missense_Mutation p.V409A 0.11 deleterious(0) benign(0.038) TCGA-VQ-AA6D-01 1 23707881 23707881 T G TCEA3 3'UTR 0.10 TCGA-VQ-AA6D-01 1 238053167 238053167 C A ZP4 Missense_Mutation p.A134S 0.04 deleterious(0.01) possibly_damaging(0.839) TCGA-VQ-AA6D-01 1 240370490 240370490 G A FMN2 Missense_Mutation p.R793Q 0.12 unknown(0) TCGA-VQ-AA6D-01 1 244724003 244724003 A G C1orf101 Missense_Mutation p.T355A 0.23 deleterious(0) probably_damaging(0.947) TCGA-VQ-AA6D-01 1 24483827 24483827 G A IFNLR1 Silent p.G452G 0.28 TCGA-VQ-AA6D-01 1 247006024 247006024 T C AHCTF1 Missense_Mutation p.R2203G 0.09 deleterious(0) possibly_damaging(0.798) TCGA-VQ-AA6D-01 1 248402855 248402855 T G OR2M4 Missense_Mutation p.F209V 0.11 tolerated(0.39) possibly_damaging(0.619) TCGA-VQ-AA6D-01 1 248487266 248487266 C A OR2M7 Missense_Mutation p.C202F 0.27 deleterious(0.02) possibly_damaging(0.521) TCGA-VQ-AA6D-01 1 2529718 2529718 G C MMEL1 Silent p.V400V 0.19 TCGA-VQ-AA6D-01 1 25717265 25717265 G A RHCE Missense_Mutation p.A259V 0.12 tolerated(0.18) benign(0.049) TCGA-VQ-AA6D-01 1 27276500 27276500 T C C1orf172 3'UTR 0.33 TCGA-VQ-AA6D-01 1 28477132 28477132 C A PTAFR Missense_Mutation p.G134V 0.20 deleterious(0) probably_damaging(1) TCGA-VQ-AA6D-01 1 31215341 31215341 G A LAPTM5 Missense_Mutation p.A48V 0.13 tolerated(0.32) benign(0.013) TCGA-VQ-AA6D-01 1 33478971 33478971 A G AK2 Silent p.D177D 0.06 TCGA-VQ-AA6D-01 1 3519033 3519033 C T MEGF6 Missense_Mutation p.R88Q 0.48 deleterious(0) possibly_damaging(0.621) TCGA-VQ-AA6D-01 1 38027202 38027202 C T DNALI1 Silent p.L170L 0.35 TCGA-VQ-AA6D-01 1 39768626 39768626 C A MACF1 Missense_Mutation p.L894I 0.40 possibly_damaging(0.897) TCGA-VQ-AA6D-01 1 40703591 40703591 A - RLF Frame_Shift_Del p.N1074Tfs*3 0.11 TCGA-VQ-AA6D-01 1 40766808 40766808 G A COL9A2 3'UTR 0.29 TCGA-VQ-AA6D-01 1 40961166 40961166 G A ZFP69 Missense_Mutation p.R339H 0.45 tolerated(0.09) probably_damaging(0.995) TCGA-VQ-AA6D-01 1 41945121 41945121 G A EDN2 Missense_Mutation p.R166W 0.33 deleterious(0) benign(0.004) TCGA-VQ-AA6D-01 1 44072063 44072063 G A PTPRF Silent p.R1212R 0.04 TCGA-VQ-AA6D-01 1 44087743 44087743 T C PTPRF 3'UTR 0.10 TCGA-VQ-AA6D-01 1 45307613 45307613 T G PTCH2 Missense_Mutation p.K57N 0.07 deleterious(0) probably_damaging(0.98) TCGA-VQ-AA6D-01 1 47131021 47131021 A C ATPAF1 Silent p.A117A 0.12 TCGA-VQ-AA6D-01 1 51864795 51864795 G A EPS15 Missense_Mutation p.A654V 0.09 deleterious(0) probably_damaging(0.991) TCGA-VQ-AA6D-01 1 52403059 52403059 C G RAB3B Missense_Mutation p.R85P 0.06 deleterious(0) possibly_damaging(0.704) TCGA-VQ-AA6D-01 1 53377283 53377283 G A ECHDC2 Missense_Mutation p.R78C 0.38 deleterious(0) probably_damaging(0.986) TCGA-VQ-AA6D-01 1 54694464 54694464 G A SSBP3 Silent p.G321G 0.15 TCGA-VQ-AA6D-01 1 62267407 62267407 A - INADL Frame_Shift_Del p.N507Mfs*7 0.19 TCGA-VQ-AA6D-01 1 63001166 63001166 T A DOCK7 Missense_Mutation p.E1172D 0.17 tolerated(0.11) benign(0.011) TCGA-VQ-AA6D-01 1 63991404 63991404 T A EFCAB7 Missense_Mutation p.I54N 0.14 deleterious(0) probably_damaging(0.961) TCGA-VQ-AA6D-01 1 6399566 6399566 G A ACOT7 Silent p.S125S 0.06 TCGA-VQ-AA6D-01 1 64515425 64515425 G C ROR1 Missense_Mutation p.E76Q 0.11 tolerated(0.51) possibly_damaging(0.555) TCGA-VQ-AA6D-01 1 68948015 68948015 T G DEPDC1 Missense_Mutation p.Q492H 0.22 tolerated(0.06) benign(0.008) TCGA-VQ-AA6D-01 1 78309060 78309060 G A FAM73A Missense_Mutation p.A322T 0.15 tolerated(0.64) benign(0.051) TCGA-VQ-AA6D-01 1 79121134 79121136 GGC - IFI44 In_Frame_Del p.G261del 0.23 TCGA-VQ-AA6D-01 1 85127911 85127911 A G SSX2IP Silent p.P299P 0.11 TCGA-VQ-AA6D-01 1 89521739 89521739 A G GBP1 Missense_Mutation p.L443P 0.07 deleterious(0.01) probably_damaging(1) TCGA-VQ-AA6D-01 1 89846120 89846120 T G GBP6 Missense_Mutation p.I267M 0.10 deleterious(0.04) benign(0.004) TCGA-VQ-AA6D-01 1 91182570 91182570 C T BARHL2 Silent p.A61A 0.09 TCGA-VQ-AA6D-01 1 93721943 93721943 G T CCDC18 Missense_Mutation p.D1185Y 0.09 deleterious(0) probably_damaging(0.979) TCGA-VQ-AA6D-01 1 9790671 9790671 G A CLSTN1 Silent p.S947S 0.41 TCGA-VQ-AA6D-01 20 13107341 13107341 T C SPTLC3 Missense_Mutation p.M419T 0.24 tolerated(0.12) benign(0.158) TCGA-VQ-AA6D-01 20 13763712 13763712 C T ESF1 Missense_Mutation p.M25I 0.34 tolerated(0.31) probably_damaging(0.914) TCGA-VQ-AA6D-01 20 23345164 23345164 C T GZF1 Silent p.A48A 0.11 TCGA-VQ-AA6D-01 20 25457530 25457530 G A NINL Silent p.C799C 0.11 TCGA-VQ-AA6D-01 20 30486330 30486330 C T TTLL9 Silent p.D56D 0.38 TCGA-VQ-AA6D-01 20 31386352 31386352 T G DNMT3B Missense_Mutation p.M526R 0.09 deleterious(0) probably_damaging(0.951) TCGA-VQ-AA6D-01 20 3211834 3211834 C T SLC4A11 Missense_Mutation p.A378T 0.37 tolerated(0.4) benign(0.052) TCGA-VQ-AA6D-01 20 32664886 32664886 T C RALY Silent p.G237G 0.28 TCGA-VQ-AA6D-01 20 33585390 33585390 C T MYH7B Missense_Mutation p.R1274C 0.34 possibly_damaging(0.899) TCGA-VQ-AA6D-01 20 34773105 34773105 G A EPB41L1 Silent p.T211T 0.10 TCGA-VQ-AA6D-01 20 36974922 36974922 G - LBP Frame_Shift_Del p.A3Pfs*64 0.09 TCGA-VQ-AA6D-01 20 37547032 37547032 G A PPP1R16B Missense_Mutation p.S476N 0.09 deleterious(0.04) benign(0.003) TCGA-VQ-AA6D-01 20 37570639 37570639 A T FAM83D Missense_Mutation p.D204V 0.24 deleterious(0) probably_damaging(0.998) TCGA-VQ-AA6D-01 20 39741495 39741495 A G TOP1 Missense_Mutation p.Y461C 0.25 deleterious(0) probably_damaging(1) TCGA-VQ-AA6D-01 20 40944616 40944616 T G PTPRT Missense_Mutation p.K629T 0.14 deleterious(0) benign(0.086) TCGA-VQ-AA6D-01 20 43379092 43379092 C G KCNK15 Missense_Mutation p.F202L 0.30 deleterious(0.04) benign(0.078) TCGA-VQ-AA6D-01 20 43727104 43727104 G T KCNS1 Nonsense_Mutation p.Y103* 0.18 TCGA-VQ-AA6D-01 20 44539798 44539800 TGT - PLTP In_Frame_Del p.N64del 0.16 TCGA-VQ-AA6D-01 20 44806615 44806615 C T CDH22 Missense_Mutation p.A629T 0.09 deleterious(0.01) probably_damaging(0.996) TCGA-VQ-AA6D-01 20 45239120 45239120 C T SLC13A3 Missense_Mutation p.R169Q 0.30 tolerated(0.64) benign(0.009) TCGA-VQ-AA6D-01 20 45839405 45839405 G A ZMYND8 3'Flank 0.06 TCGA-VQ-AA6D-01 20 47843013 47843013 C T DDX27 Missense_Mutation p.A247V 0.07 deleterious(0) probably_damaging(0.987) TCGA-VQ-AA6D-01 20 50768705 50768705 C T ZFP64 Missense_Mutation p.A676T 0.33 deleterious_low_confidence(0.01) probably_damaging(0.99) TCGA-VQ-AA6D-01 20 50769819 50769819 C T ZFP64 Silent p.S304S 0.07 TCGA-VQ-AA6D-01 20 51871890 51871890 C T TSHZ2 Silent p.G631G 0.06 TCGA-VQ-AA6D-01 20 56227420 56227420 C T PMEPA1 Missense_Mutation p.A185T 0.08 deleterious(0) probably_damaging(0.999) TCGA-VQ-AA6D-01 20 57246312 57246312 A G STX16 Missense_Mutation p.N251D 0.06 deleterious(0.01) possibly_damaging(0.697) TCGA-VQ-AA6D-01 20 57430214 57430214 C T GNAS Missense_Mutation p.R632C 0.54 tolerated_low_confidence(0.08) possibly_damaging(0.876) TCGA-VQ-AA6D-01 20 7864202 7864203 - A HAO1 3'UTR 0.31 TCGA-VQ-AA6D-01 21 22881368 22881368 T G NCAM2 Silent p.A758A 0.33 TCGA-VQ-AA6D-01 21 27945200 27945200 G C CYYR1 Silent p.L20L 0.34 TCGA-VQ-AA6D-01 21 31709428 31709428 C A KRTAP27-1 Nonsense_Mutation p.E187* 0.34 TCGA-VQ-AA6D-01 21 31798175 31798178 AAGT - KRTAP13-3 Frame_Shift_Del p.Y18Cfs*75 0.29 TCGA-VQ-AA6D-01 21 31988935 31988935 T C KRTAP20-1 Silent p.G54G 0.27 TCGA-VQ-AA6D-01 21 33642777 33642777 C T MIS18A Silent p.T155T 0.11 TCGA-VQ-AA6D-01 21 43161210 43161211 - C RIPK4 Frame_Shift_Ins p.H715Afs*15 0.46 TCGA-VQ-AA6D-01 21 45993704 45993704 C T KRTAP10-4 Silent p.C23C 0.25 TCGA-VQ-AA6D-01 22 17669266 17669266 G T CECR1 Silent p.G348G 0.11 TCGA-VQ-AA6D-01 22 18069903 18069903 C T SLC25A18 Silent p.A137A 0.30 TCGA-VQ-AA6D-01 22 19770459 19770459 C A GNB1L 3'Flank 0.10 TCGA-VQ-AA6D-01 22 19865951 19865951 C T TXNRD2 Missense_Mutation p.A429T 0.06 tolerated(0.5) possibly_damaging(0.804) TCGA-VQ-AA6D-01 22 30189478 30189478 A G ASCC2 Missense_Mutation p.V597A 0.08 deleterious(0.02) benign(0.04) TCGA-VQ-AA6D-01 22 30776313 30776313 C A RNF215 Missense_Mutation p.Q274H 0.14 deleterious(0.01) probably_damaging(0.995) TCGA-VQ-AA6D-01 22 31330985 31330985 C T MORC2 Missense_Mutation p.R597Q 0.33 tolerated(0.54) benign(0) TCGA-VQ-AA6D-01 22 31523357 31523357 C T INPP5J Silent p.G174G 0.29 TCGA-VQ-AA6D-01 22 31583200 31583200 C T RNF185 Silent p.N40N 0.26 TCGA-VQ-AA6D-01 22 37964166 37964166 C T CDC42EP1 Missense_Mutation p.P172L 0.12 tolerated(0.05) possibly_damaging(0.649) TCGA-VQ-AA6D-01 22 38689295 38689295 A G CSNK1E Nonstop_Mutation p.*417Rext*29 0.20 TCGA-VQ-AA6D-01 22 39122282 39122282 C T GTPBP1 Missense_Mutation p.S413L 0.19 deleterious(0) probably_damaging(0.998) TCGA-VQ-AA6D-01 22 39709723 39709723 G A RPL3 Silent p.V321V 0.39 TCGA-VQ-AA6D-01 22 39813758 39813758 C A TAB1 Missense_Mutation p.L152I 0.42 tolerated(0.32) benign(0.031) TCGA-VQ-AA6D-01 22 41620748 41620748 C T L3MBTL2 Silent p.A398A 0.08 TCGA-VQ-AA6D-01 22 41863530 41863530 C A PHF5A Missense_Mutation p.Q55H 0.11 deleterious(0.04) benign(0.049) TCGA-VQ-AA6D-01 22 41922401 41922401 C T ACO2 Missense_Mutation p.R633C 0.05 deleterious_low_confidence(0.02) possibly_damaging(0.881) TCGA-VQ-AA6D-01 22 43926820 43926820 A G EFCAB6 Missense_Mutation p.S1420P 0.36 deleterious(0) probably_damaging(0.953) TCGA-VQ-AA6D-01 22 44368124 44368124 G A SAMM50 Missense_Mutation p.A111T 0.11 deleterious(0) possibly_damaging(0.892) TCGA-VQ-AA6D-01 22 45765898 45765898 C T SMC1B Missense_Mutation p.V786M 0.24 deleterious(0.02) possibly_damaging(0.886) TCGA-VQ-AA6D-01 22 46098591 46098591 A - ATXN10 Frame_Shift_Del p.I173Lfs*7 0.17 TCGA-VQ-AA6D-01 22 50656997 50656997 C T TUBGCP6 Missense_Mutation p.S1625N 0.16 tolerated(1) benign(0.057) TCGA-VQ-AA6D-01 2 100046335 100046335 C A REV1 Missense_Mutation p.R505M 0.31 tolerated(1) benign(0.002) TCGA-VQ-AA6D-01 2 103334978 103334978 G - MFSD9 Frame_Shift_Del p.S443Afs*6 0.22 TCGA-VQ-AA6D-01 2 105924238 105924238 G T TGFBRAP1 Missense_Mutation p.A174D 0.42 tolerated(0.06) possibly_damaging(0.708) TCGA-VQ-AA6D-01 2 113243501 113243501 G C TTL Missense_Mutation p.E55D 0.41 tolerated(0.07) possibly_damaging(0.872) TCGA-VQ-AA6D-01 2 113286277 113286277 T A TTL Missense_Mutation p.C347S 0.10 tolerated(0.13) benign(0.114) TCGA-VQ-AA6D-01 2 114257330 114257330 T A FOXD4L1 Missense_Mutation p.V166D 0.13 deleterious(0) probably_damaging(0.949) TCGA-VQ-AA6D-01 2 114670777 114670777 A G ACTR3 Missense_Mutation p.T25A 0.07 tolerated(0.59) benign(0.006) TCGA-VQ-AA6D-01 2 11922542 11922542 G A LPIN1 Silent p.A440A 0.11 TCGA-VQ-AA6D-01 2 120097504 120097504 C T C2orf76 Missense_Mutation p.R11H 0.09 deleterious(0.04) benign(0.377) TCGA-VQ-AA6D-01 2 120677772 120677773 - T PTPN4 Frame_Shift_Ins p.A322Cfs*17 0.14 TCGA-VQ-AA6D-01 2 12858521 12858521 A T TRIB2 Missense_Mutation p.I30L 0.45 tolerated(0.7) benign(0) TCGA-VQ-AA6D-01 2 130899752 130899752 G A CCDC74B Silent p.S166S 0.11 TCGA-VQ-AA6D-01 2 131103683 131103683 C T IMP4 Silent p.F229F 0.40 TCGA-VQ-AA6D-01 2 132276630 132276630 G A AC093838.4 RNA 0.44 TCGA-VQ-AA6D-01 2 132288270 132288270 C T CCDC74A Silent p.G138G 0.09 TCGA-VQ-AA6D-01 2 136564834 136564834 C A LCT Missense_Mutation p.R1346L 0.08 deleterious(0) probably_damaging(0.991) TCGA-VQ-AA6D-01 2 149847704 149847704 A G KIF5C Missense_Mutation p.I633V 0.50 tolerated(0.39) benign(0.008) TCGA-VQ-AA6D-01 2 152507255 152507255 T A NEB Nonsense_Mutation p.K2354* 0.08 TCGA-VQ-AA6D-01 2 159196897 159196897 G T CCDC148 Missense_Mutation p.L115I 0.08 deleterious(0) possibly_damaging(0.801) TCGA-VQ-AA6D-01 2 160289475 160289475 C T BAZ2B Missense_Mutation p.E565K 0.36 benign(0.292) TCGA-VQ-AA6D-01 2 16085942 16085942 G A MYCN Missense_Mutation p.R373Q 0.09 deleterious(0.01) probably_damaging(0.937) TCGA-VQ-AA6D-01 2 1653181 1653181 C T PXDN Missense_Mutation p.A791T 0.10 tolerated(0.13) benign(0.001) TCGA-VQ-AA6D-01 2 167262910 167262910 C A SCN7A Missense_Mutation p.G1410V 0.08 deleterious(0) probably_damaging(1) TCGA-VQ-AA6D-01 2 170059344 170059344 G A LRP2 Missense_Mutation p.R2711C 0.15 probably_damaging(0.954) TCGA-VQ-AA6D-01 2 173292574 173292574 C A ITGA6 Missense_Mutation p.L20I 0.29 tolerated(0.4) unknown(0) TCGA-VQ-AA6D-01 2 174229699 174229699 C T CDCA7 Silent p.T292T 0.08 TCGA-VQ-AA6D-01 2 17692132 17692132 A C RAD51AP2 Missense_Mutation p.I1140S 0.27 deleterious(0) benign(0.069) TCGA-VQ-AA6D-01 2 179474926 179474926 C A TTN Missense_Mutation p.K17109N 0.33 TCGA-VQ-AA6D-01 2 179484796 179484796 T C TTN Missense_Mutation p.K15450E 0.43 TCGA-VQ-AA6D-01 2 179485014 179485016 AGG - TTN In_Frame_Del p.S15411del 0.45 TCGA-VQ-AA6D-01 2 179593619 179593619 T G TTN Missense_Mutation p.Q6382H 0.29 TCGA-VQ-AA6D-01 2 182542504 182542504 A G NEUROD1 3'UTR 0.09 TCGA-VQ-AA6D-01 2 191851599 191851599 G A STAT1 Missense_Mutation p.A401V 0.10 tolerated(1) benign(0.057) TCGA-VQ-AA6D-01 2 198413063 198413063 C A HSPE1-MOB4 Missense_Mutation p.P156T 0.06 tolerated(1) benign(0.274) TCGA-VQ-AA6D-01 2 198511221 198511221 C T RFTN2 Silent p.L103L 0.12 TCGA-VQ-AA6D-01 2 198571651 198571651 A T MARS2 Missense_Mutation p.T508S 0.12 tolerated(0.15) benign(0.074) TCGA-VQ-AA6D-01 2 207527659 207527659 A C DYTN Missense_Mutation p.L534R 0.31 deleterious(0) probably_damaging(0.959) TCGA-VQ-AA6D-01 2 209025629 209025629 G A CRYGA Missense_Mutation p.R142W 0.12 deleterious(0.04) benign(0.27) TCGA-VQ-AA6D-01 2 209218697 209218697 C A PIKFYVE Missense_Mutation p.L1974M 0.31 deleterious(0) probably_damaging(0.998) TCGA-VQ-AA6D-01 2 21247915 21247915 A G APOB Missense_Mutation p.Y776H 0.15 probably_damaging(0.999) TCGA-VQ-AA6D-01 2 219736426 219736426 A G WNT6 Missense_Mutation p.D174G 0.12 deleterious(0) probably_damaging(0.968) TCGA-VQ-AA6D-01 2 219892636 219892636 C A CCDC108 Silent p.P649P 0.31 TCGA-VQ-AA6D-01 2 220355185 220355185 C T SPEG Silent p.F2992F 0.15 TCGA-VQ-AA6D-01 2 220380000 220380000 A G ASIC4 Missense_Mutation p.H312R 0.10 tolerated(0.26) benign(0) TCGA-VQ-AA6D-01 2 225379411 225379411 G A CUL3 Missense_Mutation p.R153C 0.12 deleterious(0.04) possibly_damaging(0.484) TCGA-VQ-AA6D-01 2 227963445 227963445 G - COL4A4 Frame_Shift_Del p.P390Qfs*14 0.17 TCGA-VQ-AA6D-01 2 228882421 228882421 G A SPHKAP Missense_Mutation p.T1050M 0.26 deleterious(0.01) possibly_damaging(0.832) TCGA-VQ-AA6D-01 2 234394592 234394592 G A USP40 Missense_Mutation p.R1088C 0.33 deleterious(0.02) possibly_damaging(0.888) TCGA-VQ-AA6D-01 2 235951401 235951415 AGACTGTGGTGCGGC - SH3BP4 In_Frame_Del p.T664_Q668del 0.31 TCGA-VQ-AA6D-01 2 237074830 237074830 C A GBX2 Missense_Mutation p.Q258H 0.41 deleterious(0) probably_damaging(0.998) TCGA-VQ-AA6D-01 2 241569963 241569963 G A GPR35 Silent p.L229L 0.49 TCGA-VQ-AA6D-01 2 26204656 26204656 A G KIF3C Missense_Mutation p.L44P 0.21 possibly_damaging(0.879) TCGA-VQ-AA6D-01 2 27278123 27278123 T C AGBL5 Splice_Site p.X303_splice 0.08 TCGA-VQ-AA6D-01 2 27306564 27306564 G T EMILIN1 Missense_Mutation p.G709C 0.12 benign(0.376) TCGA-VQ-AA6D-01 2 27373078 27373078 C T TCF23 Missense_Mutation p.P104S 0.06 deleterious(0) probably_damaging(1) TCGA-VQ-AA6D-01 2 32476445 32476445 C A NLRC4 Missense_Mutation p.S163I 0.07 deleterious(0) probably_damaging(0.951) TCGA-VQ-AA6D-01 2 32823003 32823003 C T BIRC6 Missense_Mutation p.R4600C 0.61 probably_damaging(0.975) TCGA-VQ-AA6D-01 2 33810372 33810372 T C FAM98A Missense_Mutation p.Y343C 0.57 tolerated(0.06) unknown(0) TCGA-VQ-AA6D-01 2 3599887 3599887 G A RNASEH1 Nonsense_Mutation p.Q86* 0.10 TCGA-VQ-AA6D-01 2 42282158 42282158 C T PKDCC Missense_Mutation p.T371I 0.07 deleterious(0) benign(0.066) TCGA-VQ-AA6D-01 2 43801937 43801937 G A THADA Missense_Mutation p.R423W 0.21 tolerated(0.08) benign(0.002) TCGA-VQ-AA6D-01 2 47403655 47403655 C G CALM2 5'UTR 0.38 TCGA-VQ-AA6D-01 2 55404885 55404885 G - CLHC1 Frame_Shift_Del p.Q473Kfs*4 0.11 TCGA-VQ-AA6D-01 2 61315316 61315316 G C KIAA1841 Missense_Mutation p.E305Q 0.43 deleterious(0.02) probably_damaging(0.999) TCGA-VQ-AA6D-01 2 63631781 63631781 A G WDPCP Silent p.S279S 0.08 TCGA-VQ-AA6D-01 2 64111166 64111166 A - UGP2 Frame_Shift_Del p.I174Yfs*10 0.10 TCGA-VQ-AA6D-01 2 67637089 67637089 A - ETAA1 Frame_Shift_Del p.R902Dfs*17 0.10 TCGA-VQ-AA6D-01 2 68873178 68873178 C A PROKR1 Silent p.V75V 0.19 TCGA-VQ-AA6D-01 2 7023597 7023597 C T RSAD2 Missense_Mutation p.R148W 0.32 deleterious(0.01) possibly_damaging(0.67) TCGA-VQ-AA6D-01 2 73493774 73493774 C T FBXO41 Silent p.T314T 0.07 TCGA-VQ-AA6D-01 2 73827831 73827831 A - ALMS1 Frame_Shift_Del p.K3899Nfs*8 0.09 TCGA-VQ-AA6D-01 2 74274129 74274129 C G TET3 Missense_Mutation p.A227G 0.14 deleterious(0.01) probably_damaging(0.996) TCGA-VQ-AA6D-01 2 74783464 74783464 C T DOK1 Silent p.R223R 0.07 TCGA-VQ-AA6D-01 2 84811197 84811197 A C DNAH6 Silent p.T768T 0.35 TCGA-VQ-AA6D-01 2 88890111 88890111 T C EIF2AK3 Missense_Mutation p.I339V 0.33 tolerated(0.32) benign(0.078) TCGA-VQ-AA6D-01 2 8925926 8925926 C T KIDINS220 Missense_Mutation p.R725H 0.06 tolerated(0.24) possibly_damaging(0.861) TCGA-VQ-AA6D-01 2 9628528 9628528 T - IAH1 3'UTR 0.36 TCGA-VQ-AA6D-01 2 96657440 96657440 G T ANKRD36C Missense_Mutation p.P6Q 0.15 tolerated_low_confidence(0.06) benign(0) TCGA-VQ-AA6D-01 2 97025921 97025921 A - NCAPH Frame_Shift_Del p.D469Ifs*25 0.09 TCGA-VQ-AA6D-01 2 97862355 97862355 G C ANKRD36 Missense_Mutation p.L859F 0.30 tolerated_low_confidence(0.21) benign(0.016) TCGA-VQ-AA6D-01 3 10115019 10115019 G A FANCD2 Silent p.T896T 0.07 TCGA-VQ-AA6D-01 3 10443829 10443829 C T ATP2B2 Missense_Mutation p.V201I 0.24 tolerated(1) benign(0.005) TCGA-VQ-AA6D-01 3 10444026 10444026 G A ATP2B2 Missense_Mutation p.A135V 0.05 tolerated(0.08) benign(0.225) TCGA-VQ-AA6D-01 3 107941131 107941131 C T IFT57 Silent p.L13L 0.26 TCGA-VQ-AA6D-01 3 108572752 108572752 G A TRAT1 3'UTR 0.23 TCGA-VQ-AA6D-01 3 109128861 109128861 G T RP11-702L6.4 RNA 0.19 TCGA-VQ-AA6D-01 3 111368657 111368657 C T CD96 3'UTR 0.27 TCGA-VQ-AA6D-01 3 111368734 111368734 G A CD96 3'UTR 0.54 TCGA-VQ-AA6D-01 3 118623533 118623533 A C IGSF11 Missense_Mutation p.N272K 0.09 tolerated(0.47) benign(0.11) TCGA-VQ-AA6D-01 3 119134064 119134064 G T ARHGAP31 Silent p.G1096G 0.41 TCGA-VQ-AA6D-01 3 121354595 121354595 C T HCLS1 Silent p.T226T 0.08 TCGA-VQ-AA6D-01 3 12198962 12198962 T A TIMP4 Missense_Mutation p.S54C 0.06 deleterious(0) possibly_damaging(0.868) TCGA-VQ-AA6D-01 3 122133663 122133663 T A WDR5B Missense_Mutation p.D238V 0.12 deleterious(0) possibly_damaging(0.756) TCGA-VQ-AA6D-01 3 125844506 125844506 C A ALDH1L1 Missense_Mutation p.A595S 0.13 tolerated(0.07) benign(0.139) TCGA-VQ-AA6D-01 3 128875494 128875495 - T ISY1 Frame_Shift_Ins p.V57Sfs*11 0.27 TCGA-VQ-AA6D-01 3 129251445 129251445 A C RHO Missense_Mutation p.I256L 0.21 tolerated(0.88) benign(0.002) TCGA-VQ-AA6D-01 3 130360505 130360505 G A COL6A6 Missense_Mutation p.G1701R 0.44 deleterious(0) probably_damaging(1) TCGA-VQ-AA6D-01 3 130435321 130435321 C G PIK3R4 Missense_Mutation p.K750N 0.31 tolerated(0.54) benign(0.096) TCGA-VQ-AA6D-01 3 134339621 134339621 C T KY Missense_Mutation p.A188T 0.12 deleterious(0) possibly_damaging(0.793) TCGA-VQ-AA6D-01 3 138193151 138193151 A G ESYT3 Missense_Mutation p.T809A 0.35 deleterious(0) probably_damaging(0.998) TCGA-VQ-AA6D-01 3 139297887 139297887 C A NMNAT3 Missense_Mutation p.Q3H 0.24 tolerated(0.09) benign(0.032) TCGA-VQ-AA6D-01 3 141934523 141934523 A C GK5 Silent p.L53L 0.09 TCGA-VQ-AA6D-01 3 151073809 151073809 A G MED12L Silent p.L846L 0.10 TCGA-VQ-AA6D-01 3 15117208 15117208 G A ZFYVE20 Missense_Mutation p.L371F 0.27 tolerated(0.05) benign(0.32) TCGA-VQ-AA6D-01 3 151599222 151599222 T G SUCNR1 Silent p.L297L 0.24 TCGA-VQ-AA6D-01 3 170078197 170078197 C - SKIL Frame_Shift_Del p.P28Qfs*5 0.24 TCGA-VQ-AA6D-01 3 178543399 178543399 A C KCNMB2 Missense_Mutation p.D27A 0.07 tolerated(0.07) possibly_damaging(0.78) TCGA-VQ-AA6D-01 3 178984477 178984477 C G KCNMB3 Missense_Mutation p.V8L 0.21 deleterious(0.02) benign(0.231) TCGA-VQ-AA6D-01 3 180320089 180320089 G T TTC14 Missense_Mutation p.G14W 0.07 deleterious(0) probably_damaging(0.999) TCGA-VQ-AA6D-01 3 180694181 180694181 G A FXR1 3'UTR 0.23 TCGA-VQ-AA6D-01 3 184297579 184297579 C T EPHB3 Missense_Mutation p.R677W 0.40 deleterious(0) probably_damaging(1) TCGA-VQ-AA6D-01 3 185191427 185191427 G A MAP3K13 Missense_Mutation p.A770T 0.04 tolerated_low_confidence(0.43) benign(0.002) TCGA-VQ-AA6D-01 3 185643269 185643269 G A TRA2B Missense_Mutation p.R106C 0.10 deleterious(0) unknown(0) TCGA-VQ-AA6D-01 3 195391030 195391030 G A SDHAP2 RNA 0.06 TCGA-VQ-AA6D-01 3 27346451 27346451 T C NEK10 Missense_Mutation p.E272G 0.12 deleterious(0.01) benign(0.39) TCGA-VQ-AA6D-01 3 32932245 32932245 C T TRIM71 Missense_Mutation p.R517C 0.58 tolerated(0.16) benign(0.041) TCGA-VQ-AA6D-01 3 37092061 37092061 C T MLH1 Missense_Mutation p.P730S 0.25 deleterious(0.04) probably_damaging(0.958) TCGA-VQ-AA6D-01 3 38519650 38519650 C T ACVR2B Missense_Mutation p.P130L 0.22 deleterious(0.05) benign(0.008) TCGA-VQ-AA6D-01 3 42675146 42675146 G A NKTR Missense_Mutation p.R283H 0.10 deleterious_low_confidence(0) unknown(0) TCGA-VQ-AA6D-01 3 44684046 44684046 G A ZNF197 Missense_Mutation p.R475H 0.10 tolerated(0.58) benign(0.019) TCGA-VQ-AA6D-01 3 44700479 44700479 C T ZNF35 Silent p.G208G 0.32 TCGA-VQ-AA6D-01 3 46414667 46414667 G A CCR5 Missense_Mutation p.A92T 0.27 tolerated(0.17) benign(0.003) TCGA-VQ-AA6D-01 3 47038763 47038763 C T NBEAL2 Silent p.C888C 0.14 TCGA-VQ-AA6D-01 3 47449046 47449046 A G PTPN23 Silent p.P325P 0.23 TCGA-VQ-AA6D-01 3 48456404 48456404 C T PLXNB1 Missense_Mutation p.R1338H 0.06 tolerated(0.64) benign(0.015) TCGA-VQ-AA6D-01 3 48459643 48459643 G C PLXNB1 Missense_Mutation p.A1060G 0.12 tolerated(0.52) benign(0.063) TCGA-VQ-AA6D-01 3 48606827 48606827 T C COL7A1 Missense_Mutation p.N2556S 0.18 benign(0.127) TCGA-VQ-AA6D-01 3 48628909 48628909 G A COL7A1 Missense_Mutation p.R542C 0.08 unknown(0) TCGA-VQ-AA6D-01 3 49006062 49006062 C T ARIH2 Missense_Mutation p.R212C 0.07 deleterious(0) possibly_damaging(0.541) TCGA-VQ-AA6D-01 3 49163540 49163540 G A LAMB2 Missense_Mutation p.A735V 0.33 tolerated(0.73) benign(0.002) TCGA-VQ-AA6D-01 3 49200994 49200994 T C CCDC71 Silent p.S216S 0.35 TCGA-VQ-AA6D-01 3 49690065 49690065 C T BSN Missense_Mutation p.R1026W 0.35 unknown(0) TCGA-VQ-AA6D-01 3 51418780 51418780 C T DOCK3 Silent p.C1961C 0.10 TCGA-VQ-AA6D-01 3 51677947 51677947 G A RAD54L2 Missense_Mutation p.D803N 0.30 tolerated(0.1) possibly_damaging(0.53) TCGA-VQ-AA6D-01 3 51747211 51747211 G A GRM2 Silent p.A391A 0.09 TCGA-VQ-AA6D-01 3 52266116 52266116 C T TWF2 Silent p.S42S 0.46 TCGA-VQ-AA6D-01 3 52623119 52623119 C T PBRM1 Missense_Mutation p.V978I 0.07 tolerated(0.21) benign(0.208) TCGA-VQ-AA6D-01 3 53156394 53156394 A G RFT1 Missense_Mutation p.L151P 0.06 deleterious(0) probably_damaging(0.997) TCGA-VQ-AA6D-01 3 57543368 57543368 A G PDE12 Missense_Mutation p.Y421C 0.32 tolerated(0.18) benign(0.012) TCGA-VQ-AA6D-01 3 58121848 58121848 G A FLNB Missense_Mutation p.R1636H 0.17 tolerated(0.08) possibly_damaging(0.876) TCGA-VQ-AA6D-01 3 58494666 58494666 T C ACOX2 Missense_Mutation p.Y646C 0.11 deleterious(0) probably_damaging(1) TCGA-VQ-AA6D-01 3 58635058 58635058 C T FAM3D Silent p.S43S 0.29 TCGA-VQ-AA6D-01 3 65415634 65415635 - A MAGI1 Frame_Shift_Ins p.L576Ffs*3 0.21 TCGA-VQ-AA6D-01 3 69112615 69112615 G A UBA3 Missense_Mutation p.A171V 0.14 deleterious(0) probably_damaging(0.999) TCGA-VQ-AA6D-01 3 71247446 71247446 G A FOXP1 Silent p.C29C 0.10 TCGA-VQ-AA6D-01 3 72866503 72866503 G A SHQ1 Nonsense_Mutation p.R254* 0.42 TCGA-VQ-AA6D-01 3 88040134 88040134 T C HTR1F Missense_Mutation p.F79L 0.12 tolerated(0.2) benign(0.023) TCGA-VQ-AA6D-01 3 88189305 88189305 C A ZNF654 Missense_Mutation p.P282Q 0.16 tolerated(0.28) possibly_damaging(0.693) TCGA-VQ-AA6D-01 3 93755492 93755492 G A ARL13B Missense_Mutation p.D195N 0.50 deleterious(0.01) benign(0.258) TCGA-VQ-AA6D-01 3 96533585 96533585 A G EPHA6 Missense_Mutation p.T40A 0.73 tolerated_low_confidence(1) benign(0) TCGA-VQ-AA6D-01 3 9760187 9760187 C T CPNE9 Missense_Mutation p.A381V 0.08 tolerated(0.29) benign(0.004) TCGA-VQ-AA6D-01 3 97680454 97680454 C T MINA Silent p.P177P 0.31 TCGA-VQ-AA6D-01 3 9862249 9862249 A C TTLL3 Missense_Mutation p.K326N 0.08 tolerated(0.11) benign(0.213) TCGA-VQ-AA6D-01 4 100261758 100261758 C T ADH1C Missense_Mutation p.R313H 0.40 probably_damaging(0.996) TCGA-VQ-AA6D-01 4 10444981 10444981 C T ZNF518B Missense_Mutation p.R991H 0.06 deleterious(0) probably_damaging(0.997) TCGA-VQ-AA6D-01 4 106534623 106534623 A G ARHGEF38 Missense_Mutation p.E156G 0.28 deleterious(0.03) benign(0.328) TCGA-VQ-AA6D-01 4 113462248 113462248 C A C4orf21 Missense_Mutation p.Q1925H 0.44 deleterious(0) probably_damaging(0.996) TCGA-VQ-AA6D-01 4 123342417 123342418 - C ADAD1 Frame_Shift_Ins p.F499Ifs*2 0.10 TCGA-VQ-AA6D-01 4 147561240 147561240 G A POU4F2 Silent p.T170T 0.16 TCGA-VQ-AA6D-01 4 151223884 151223884 T A LRBA Missense_Mutation p.E2648V 0.10 deleterious(0) probably_damaging(0.999) TCGA-VQ-AA6D-01 4 153247357 153247358 GT A FBXW7 Frame_Shift_Del p.T482Ffs*16 0.21 TCGA-VQ-AA6D-01 4 155253704 155253704 T A DCHS2 Missense_Mutation p.D720V 0.07 deleterious(0) probably_damaging(0.971) TCGA-VQ-AA6D-01 4 155253858 155253858 C T DCHS2 Missense_Mutation p.G669R 0.11 tolerated(0.92) benign(0.001) TCGA-VQ-AA6D-01 4 156136095 156136095 C A NPY2R Missense_Mutation p.A335D 0.21 deleterious(0.03) possibly_damaging(0.889) TCGA-VQ-AA6D-01 4 156273869 156273869 T - MAP9 Frame_Shift_Del p.K567Rfs*13 0.13 TCGA-VQ-AA6D-01 4 158142838 158142838 C T GRIA2 Silent p.G36G 0.23 TCGA-VQ-AA6D-01 4 169812144 169812144 C T PALLD Missense_Mutation p.A679V 0.15 tolerated(0.06) possibly_damaging(0.504) TCGA-VQ-AA6D-01 4 170043337 170043337 A G SH3RF1 Silent p.A420A 0.08 TCGA-VQ-AA6D-01 4 170523243 170523243 C T NEK1 Missense_Mutation p.E44K 0.11 deleterious(0) probably_damaging(0.997) TCGA-VQ-AA6D-01 4 187455118 187455118 C T MTNR1A Missense_Mutation p.A260T 0.15 tolerated(0.07) benign(0.2) TCGA-VQ-AA6D-01 4 1980595 1980595 C T WHSC1 Missense_Mutation p.R1353W 0.16 deleterious_low_confidence(0.01) unknown(0) TCGA-VQ-AA6D-01 4 42526846 42526846 G A ATP8A1 Nonsense_Mutation p.R581* 0.50 TCGA-VQ-AA6D-01 4 48037957 48037957 C G NIPAL1 Missense_Mutation p.A334G 0.05 tolerated(0.19) possibly_damaging(0.886) TCGA-VQ-AA6D-01 4 48567705 48567705 T C FRYL Missense_Mutation p.H1058R 0.08 deleterious(0.02) benign(0.045) TCGA-VQ-AA6D-01 4 6377653 6377653 T C PPP2R2C Missense_Mutation p.T114A 0.42 deleterious(0) possibly_damaging(0.899) TCGA-VQ-AA6D-01 4 68619978 68619978 C T GNRHR Missense_Mutation p.G26S 0.34 tolerated(0.55) benign(0.002) TCGA-VQ-AA6D-01 4 69343152 69343152 G A TMPRSS11E Missense_Mutation p.R258Q 0.22 tolerated(0.09) benign(0.083) TCGA-VQ-AA6D-01 4 72204889 72204889 C T SLC4A4 Intron 0.21 TCGA-VQ-AA6D-01 4 76912029 76912030 - A SDAD1 5'UTR 0.32 TCGA-VQ-AA6D-01 4 79343139 79343139 G T FRAS1 Missense_Mutation p.A1555S 0.07 benign(0.14) TCGA-VQ-AA6D-01 4 83838748 83838748 A G THAP9 Missense_Mutation p.I461M 0.14 tolerated(0.17) benign(0.11) TCGA-VQ-AA6D-01 4 83857501 83857501 G A LIN54 Silent p.C546C 0.10 TCGA-VQ-AA6D-01 4 85639670 85639670 C - WDFY3 Frame_Shift_Del p.L2554Sfs*11 0.14 TCGA-VQ-AA6D-01 4 87754516 87754516 G T SLC10A6 Missense_Mutation p.L147I 0.06 tolerated(1) benign(0.021) TCGA-VQ-AA6D-01 4 89425525 89425525 A G HERC5 Missense_Mutation p.I909V 0.45 tolerated(0.36) benign(0.083) TCGA-VQ-AA6D-01 4 90816279 90816279 C T MMRN1 Nonsense_Mutation p.Q53* 0.23 TCGA-VQ-AA6D-01 4 951695 951695 G A TMEM175 Missense_Mutation p.R309H 0.43 tolerated(0.31) benign(0.004) TCGA-VQ-AA6D-01 5 1244427 1244427 A G SLC6A18 Missense_Mutation p.N479D 0.41 tolerated(0.09) benign(0.057) TCGA-VQ-AA6D-01 5 127624872 127624872 C A FBN2 Missense_Mutation p.R2195L 0.12 deleterious(0.01) possibly_damaging(0.903) TCGA-VQ-AA6D-01 5 134305721 134305721 C T CATSPER3 Missense_Mutation p.A64V 0.72 deleterious(0) possibly_damaging(0.559) TCGA-VQ-AA6D-01 5 137801552 137801552 G A EGR1 Silent p.K34K 0.27 TCGA-VQ-AA6D-01 5 13871097 13871097 C T DNAH5 Missense_Mutation p.A1205T 0.12 possibly_damaging(0.499) TCGA-VQ-AA6D-01 5 140236448 140236448 T C PCDHA10 Missense_Mutation p.I272T 0.06 tolerated_low_confidence(0.51) benign(0.006) TCGA-VQ-AA6D-01 5 140711928 140711928 G A PCDHGA1 Silent p.A559A 0.09 TCGA-VQ-AA6D-01 5 140744795 140744795 G A PCDHGA5 Missense_Mutation p.E300K 0.18 deleterious_low_confidence(0.03) possibly_damaging(0.756) TCGA-VQ-AA6D-01 5 140746133 140746133 G A PCDHGA5 Missense_Mutation p.V746I 0.49 deleterious_low_confidence(0.01) possibly_damaging(0.589) TCGA-VQ-AA6D-01 5 140789295 140789295 C T PCDHGB6 Missense_Mutation p.A509V 0.09 deleterious(0.03) benign(0.393) TCGA-VQ-AA6D-01 5 140812314 140812314 C T PCDHGA12 Missense_Mutation p.A663V 0.06 tolerated_low_confidence(0.12) benign(0.4) TCGA-VQ-AA6D-01 5 140885037 140885037 C T PCDHGB6 Missense_Mutation p.A852V 0.18 deleterious(0) probably_damaging(0.946) TCGA-VQ-AA6D-01 5 141336250 141336250 G A PCDH12 Silent p.V389V 0.08 TCGA-VQ-AA6D-01 5 1463837 1463837 C T LPCAT1 Missense_Mutation p.G512S 0.10 tolerated(0.14) possibly_damaging(0.738) TCGA-VQ-AA6D-01 5 150028582 150028582 G - SYNPO Frame_Shift_Del p.G494Afs*11 0.35 TCGA-VQ-AA6D-01 5 153085270 153085270 C T GRIA1 Missense_Mutation p.A499V 0.20 deleterious(0) probably_damaging(0.999) TCGA-VQ-AA6D-01 5 156533658 156533658 A G HAVCR2 Missense_Mutation p.L125P 0.10 deleterious(0) probably_damaging(0.984) TCGA-VQ-AA6D-01 5 169805757 169805757 G T KCNMB1 Missense_Mutation p.A176D 0.38 deleterious(0.01) possibly_damaging(0.751) TCGA-VQ-AA6D-01 5 177690278 177690278 T C COL23A1 Silent p.G190G 0.26 TCGA-VQ-AA6D-01 5 179260189 179260189 G A SQSTM1 Silent p.T304T 0.26 TCGA-VQ-AA6D-01 5 179264734 179264734 G A C5orf45 Missense_Mutation p.A230V 0.15 deleterious(0.04) possibly_damaging(0.773) TCGA-VQ-AA6D-01 5 192320 192320 C T LRRC14B Missense_Mutation p.R223W 0.23 deleterious(0.01) probably_damaging(0.931) TCGA-VQ-AA6D-01 5 24488219 24488219 T - CDH10 Frame_Shift_Del p.E641Sfs*3 0.14 TCGA-VQ-AA6D-01 5 33683121 33683121 A G ADAMTS12 Splice_Site p.X305_splice 0.23 TCGA-VQ-AA6D-01 5 37001138 37001138 A T NIPBL Missense_Mutation p.N1208Y 0.21 tolerated(0.07) probably_damaging(0.959) TCGA-VQ-AA6D-01 5 5239280 5239280 A G ADAMTS16 Missense_Mutation p.N724S 0.19 tolerated(0.07) benign(0.007) TCGA-VQ-AA6D-01 5 56546855 56546855 A C GPBP1 Missense_Mutation p.E356D 0.14 tolerated(0.26) benign(0.05) TCGA-VQ-AA6D-01 5 63256897 63256897 C T HTR1A Missense_Mutation p.R217H 0.08 deleterious(0) probably_damaging(0.982) TCGA-VQ-AA6D-01 5 75996951 75996951 C T IQGAP2 Missense_Mutation p.A1473V 0.78 tolerated(0.22) benign(0.003) TCGA-VQ-AA6D-01 5 76709090 76709090 G A PDE8B Missense_Mutation p.V623I 0.20 deleterious(0) possibly_damaging(0.69) TCGA-VQ-AA6D-01 5 7878151 7878151 G T MTRR Missense_Mutation p.A193S 0.37 tolerated(0.68) benign(0.038) TCGA-VQ-AA6D-01 5 80911354 80911354 C T SSBP2 Missense_Mutation p.A74T 0.15 deleterious(0) probably_damaging(0.947) TCGA-VQ-AA6D-01 5 96322349 96322349 T G LNPEP Missense_Mutation p.L369R 0.14 deleterious(0) possibly_damaging(0.493) TCGA-VQ-AA6D-01 6 107391602 107391602 C - BEND3 Frame_Shift_Del p.D265Tfs*54 0.12 TCGA-VQ-AA6D-01 6 10990032 10990032 G A ELOVL2 Silent p.A223A 0.06 TCGA-VQ-AA6D-01 6 111631287 111631287 A G REV3L Silent p.Y2937Y 0.09 TCGA-VQ-AA6D-01 6 112397635 112397635 A T TUBE1 Missense_Mutation p.S176T 0.10 tolerated(0.21) benign(0.056) TCGA-VQ-AA6D-01 6 112422018 112422018 A G FAM229B 3'UTR 0.09 TCGA-VQ-AA6D-01 6 116720821 116720821 G A DSE Silent p.Q136Q 0.35 TCGA-VQ-AA6D-01 6 121655488 121655488 G A TBC1D32 Missense_Mutation p.A30V 0.15 deleterious(0) probably_damaging(0.999) TCGA-VQ-AA6D-01 6 127911248 127911248 A G C6orf58 Missense_Mutation p.K231E 0.19 tolerated(0.36) benign(0.065) TCGA-VQ-AA6D-01 6 131900335 131900335 C A ARG1 Missense_Mutation p.S80Y 0.26 tolerated(0.59) probably_damaging(0.921) TCGA-VQ-AA6D-01 6 13621024 13621024 C T NOL7 Missense_Mutation p.R247W 0.34 deleterious(0) probably_damaging(0.953) TCGA-VQ-AA6D-01 6 139164201 139164201 G A ECT2L Missense_Mutation p.R143H 0.33 tolerated(0.79) benign(0) TCGA-VQ-AA6D-01 6 144878335 144878335 G A UTRN Missense_Mutation p.A2393T 0.07 deleterious(0.05) benign(0.242) TCGA-VQ-AA6D-01 6 145110372 145110372 A T UTRN Silent p.G2959G 0.10 TCGA-VQ-AA6D-01 6 152456242 152456242 A - SYNE1 Frame_Shift_Del p.M8596Cfs*3 0.10 TCGA-VQ-AA6D-01 6 15497014 15497014 G A JARID2 Missense_Mutation p.A520T 0.08 tolerated(0.44) benign(0.002) TCGA-VQ-AA6D-01 6 166779478 166779478 G A MPC1 Missense_Mutation p.R97W 0.26 deleterious(0.01) possibly_damaging(0.741) TCGA-VQ-AA6D-01 6 166780295 166780295 G A MPC1 Missense_Mutation p.R54W 0.31 deleterious(0) benign(0.245) TCGA-VQ-AA6D-01 6 168465673 168465673 C T FRMD1 Missense_Mutation p.A176T 0.17 tolerated(0.61) benign(0.021) TCGA-VQ-AA6D-01 6 25726459 25726459 G A HIST1H2AA Silent p.G99G 0.06 TCGA-VQ-AA6D-01 6 26189204 26189204 G A HIST1H4D Missense_Mutation p.A34V 0.40 deleterious(0.04) possibly_damaging(0.548) TCGA-VQ-AA6D-01 6 27861501 27861501 C G HIST1H2BO Silent p.R87R 0.06 TCGA-VQ-AA6D-01 6 28194987 28194987 G A ZSCAN9 Missense_Mutation p.R42H 0.27 tolerated(0.13) benign(0.005) TCGA-VQ-AA6D-01 6 31504402 31504404 TTC - DDX39B In_Frame_Del p.K163del 0.29 TCGA-VQ-AA6D-01 6 31895358 31895358 C A C2 5'UTR 0.11 TCGA-VQ-AA6D-01 6 32117406 32117406 G A PRRT1 Missense_Mutation p.R218C 0.10 deleterious(0.01) probably_damaging(0.972) TCGA-VQ-AA6D-01 6 32166723 32166723 G A NOTCH4 Silent p.G1505G 0.04 TCGA-VQ-AA6D-01 6 32904865 32904865 C T HLA-DMB Intron 0.39 TCGA-VQ-AA6D-01 6 32945677 32945677 T C BRD2 Silent p.S491S 0.10 TCGA-VQ-AA6D-01 6 36262021 36262021 G A PNPLA1 Missense_Mutation p.A187T 0.09 tolerated(0.85) benign(0.058) TCGA-VQ-AA6D-01 6 38565860 38565860 C T BTBD9 Missense_Mutation p.S4N 0.41 tolerated(0.26) unknown(0) TCGA-VQ-AA6D-01 6 38652279 38652279 T G GLO1 Missense_Mutation p.K60T 0.47 tolerated(0.07) possibly_damaging(0.829) TCGA-VQ-AA6D-01 6 39325100 39325100 C T KIF6 Silent p.Q711Q 0.35 TCGA-VQ-AA6D-01 6 401458 401458 A C IRF4 Missense_Mutation p.E260D 0.43 tolerated(0.75) benign(0.013) TCGA-VQ-AA6D-01 6 41739068 41739068 G A FRS3 Silent p.C256C 0.23 TCGA-VQ-AA6D-01 6 43146057 43146057 G A SRF Silent p.T396T 0.33 TCGA-VQ-AA6D-01 6 43406384 43406384 C T ABCC10 Missense_Mutation p.R660W 0.47 tolerated(0.18) benign(0) TCGA-VQ-AA6D-01 6 44272539 44272539 T G AARS2 Missense_Mutation p.E532A 0.10 tolerated(0.45) possibly_damaging(0.831) TCGA-VQ-AA6D-01 6 45870895 45870895 T C CLIC5 Missense_Mutation p.N388S 0.27 tolerated(0.12) possibly_damaging(0.484) TCGA-VQ-AA6D-01 6 46684787 46684787 G A PLA2G7 Silent p.G52G 0.37 TCGA-VQ-AA6D-01 6 51483787 51483787 T A PKHD1 3'UTR 0.15 TCGA-VQ-AA6D-01 6 55739269 55739269 G A BMP5 Missense_Mutation p.T132M 0.23 tolerated(0.25) benign(0.009) TCGA-VQ-AA6D-01 6 57183302 57183302 C T PRIM2 Missense_Mutation p.A20V 0.27 tolerated(0.29) benign(0.008) TCGA-VQ-AA6D-01 6 572583 572583 C G EXOC2 Missense_Mutation p.L460F 0.16 tolerated(0.2) probably_damaging(0.969) TCGA-VQ-AA6D-01 6 70639513 70639513 A G COL19A1 Missense_Mutation p.Q196R 0.11 tolerated(0.44) unknown(0) TCGA-VQ-AA6D-01 6 70639535 70639535 G A COL19A1 Silent p.V203V 0.14 TCGA-VQ-AA6D-01 6 70950419 70950419 T A COL9A1 Missense_Mutation p.E684D 0.39 probably_damaging(0.959) TCGA-VQ-AA6D-01 6 72947537 72947537 A - RIMS1 Frame_Shift_Del p.M625* 0.22 TCGA-VQ-AA6D-01 7 100681846 100681846 C T MUC17 Silent p.D2383D 0.08 TCGA-VQ-AA6D-01 7 100777142 100777142 G A SERPINE1 Missense_Mutation p.M289I 0.09 deleterious(0.03) probably_damaging(0.939) TCGA-VQ-AA6D-01 7 100861392 100861392 G A ZNHIT1 5'UTR 0.50 TCGA-VQ-AA6D-01 7 102312019 102312019 G C POLR2J2 Missense_Mutation p.F10L 0.81 deleterious(0.02) benign(0.224) TCGA-VQ-AA6D-01 7 104731691 104731691 A - KMT2E Frame_Shift_Del p.T553Lfs*7 0.27 TCGA-VQ-AA6D-01 7 107207593 107207593 G C DUS4L Missense_Mutation p.Q26H 0.15 tolerated(0.19) benign(0.001) TCGA-VQ-AA6D-01 7 107215749 107215749 A C DUS4L Missense_Mutation p.K158T 0.15 deleterious(0) probably_damaging(1) TCGA-VQ-AA6D-01 7 107674787 107674787 C T LAMB4 Missense_Mutation p.A1562T 0.09 tolerated(0.17) benign(0.006) TCGA-VQ-AA6D-01 7 110763174 110763174 C T LRRN3 Missense_Mutation p.P116S 0.11 tolerated(0.62) benign(0.006) TCGA-VQ-AA6D-01 7 111846176 111846176 C T DOCK4 Silent p.E6E 0.21 TCGA-VQ-AA6D-01 7 111926981 111926981 A C ZNF277 Missense_Mutation p.T49P 0.09 tolerated(0.07) benign(0) TCGA-VQ-AA6D-01 7 112462182 112462182 C T C7orf60 Missense_Mutation p.D279N 0.33 deleterious(0) probably_damaging(1) TCGA-VQ-AA6D-01 7 127255024 127255024 C T PAX4 Silent p.Q82Q 0.31 TCGA-VQ-AA6D-01 7 127334972 127334972 C T SND1 Nonsense_Mutation p.R107* 0.08 TCGA-VQ-AA6D-01 7 129096328 129096328 C T STRIP2 Missense_Mutation p.R295W 0.07 deleterious(0) probably_damaging(1) TCGA-VQ-AA6D-01 7 129950677 129950677 G A CPA4 Missense_Mutation p.A282T 0.12 deleterious(0.01) probably_damaging(0.922) TCGA-VQ-AA6D-01 7 135301468 135301468 A G NUP205 Missense_Mutation p.T1176A 0.35 tolerated(0.83) benign(0.004) TCGA-VQ-AA6D-01 7 138827051 138827051 G T TTC26 Missense_Mutation p.K133N 0.14 deleterious(0) probably_damaging(0.979) TCGA-VQ-AA6D-01 7 140048516 140048518 AGA - SLC37A3 In_Frame_Del p.F311del 0.21 TCGA-VQ-AA6D-01 7 142658084 142658084 C T KEL Missense_Mutation p.A111T 0.07 tolerated(1) benign(0.008) TCGA-VQ-AA6D-01 7 143453403 143453403 A C CTAGE6 Missense_Mutation p.F450C 0.17 tolerated(0.05) possibly_damaging(0.753) TCGA-VQ-AA6D-01 7 148112637 148112637 G A CNTNAP2 Missense_Mutation p.A1309T 0.10 tolerated(0.82) benign(0.021) TCGA-VQ-AA6D-01 7 149576630 149576630 G A ATP6V0E2 Missense_Mutation p.R169Q 0.29 deleterious_low_confidence(0) benign(0.238) TCGA-VQ-AA6D-01 7 150068828 150068828 G A REPIN1 Silent p.R223R 0.28 TCGA-VQ-AA6D-01 7 150649926 150649926 C T KCNH2 Missense_Mutation p.A382T 0.07 deleterious(0) probably_damaging(0.957) TCGA-VQ-AA6D-01 7 150918692 150918692 A G ABCF2 Missense_Mutation p.M298T 0.16 deleterious(0.04) possibly_damaging(0.497) TCGA-VQ-AA6D-01 7 154684387 154684387 A G DPP6 3'UTR 0.39 TCGA-VQ-AA6D-01 7 154863245 154863245 G A HTR5A Silent p.P212P 0.33 TCGA-VQ-AA6D-01 7 158704353 158704353 A - WDR60 Frame_Shift_Del p.N527Ifs*23 0.35 TCGA-VQ-AA6D-01 7 21659635 21659635 G A DNAH11 Missense_Mutation p.R1485Q 0.16 benign(0.095) TCGA-VQ-AA6D-01 7 21951271 21951271 C T CDCA7L Silent p.Q89Q 0.40 TCGA-VQ-AA6D-01 7 27880440 27880440 G A JAZF1 Silent p.S144S 0.30 TCGA-VQ-AA6D-01 7 28547278 28547278 G A CREB5 Missense_Mutation p.V72M 0.07 deleterious(0) probably_damaging(0.994) TCGA-VQ-AA6D-01 7 36338761 36338761 C T EEPD1 Silent p.N552N 0.39 TCGA-VQ-AA6D-01 7 36429679 36429679 G A KIAA0895 Missense_Mutation p.A2V 0.29 tolerated_low_confidence(1) benign(0) TCGA-VQ-AA6D-01 7 43484894 43484894 A G HECW1 Missense_Mutation p.Y708C 0.41 deleterious_low_confidence(0) possibly_damaging(0.896) TCGA-VQ-AA6D-01 7 44747666 44747666 A C OGDH 3'UTR 0.17 TCGA-VQ-AA6D-01 7 47409015 47409015 C T TNS3 Missense_Mutation p.A410T 0.15 tolerated(0.23) benign(0.005) TCGA-VQ-AA6D-01 7 4830419 4830419 G A AP5Z1 Missense_Mutation p.R685H 0.14 deleterious(0.01) probably_damaging(0.975) TCGA-VQ-AA6D-01 7 48312330 48312330 G T ABCA13 Nonsense_Mutation p.G1023* 0.31 TCGA-VQ-AA6D-01 7 55755555 55755555 T C RNU6-389P 3'Flank 0.35 TCGA-VQ-AA6D-01 7 57528659 57528659 A C ZNF716 Missense_Mutation p.K164N 0.36 tolerated(0.07) possibly_damaging(0.585) TCGA-VQ-AA6D-01 7 6080790 6080790 G - EIF2AK1 Frame_Shift_Del p.T285Pfs*21 0.10 TCGA-VQ-AA6D-01 7 73010725 73010725 A G MLXIPL Missense_Mutation p.I636T 0.07 tolerated(0.69) benign(0.002) TCGA-VQ-AA6D-01 7 73634307 73634307 C A LAT2 Missense_Mutation p.P66T 0.11 tolerated(0.07) benign(0.332) TCGA-VQ-AA6D-01 7 73646453 73646453 C T RFC2 Missense_Mutation p.A350T 0.05 tolerated(0.09) benign(0.013) TCGA-VQ-AA6D-01 7 73954270 73954270 T A GTF2IRD1 Missense_Mutation p.D562E 0.39 tolerated(0.51) benign(0.365) TCGA-VQ-AA6D-01 7 81662173 81662173 G A CACNA2D1 Silent p.F361F 0.10 TCGA-VQ-AA6D-01 7 82579669 82579669 T - PCLO Frame_Shift_Del p.K3412Rfs*19 0.22 TCGA-VQ-AA6D-01 7 91624076 91624076 A G AKAP9 Missense_Mutation p.I240V 0.09 possibly_damaging(0.871) TCGA-VQ-AA6D-01 7 98565212 98565212 T G TRRAP Missense_Mutation p.V2461G 0.28 possibly_damaging(0.613) TCGA-VQ-AA6D-01 7 99081750 99081750 C T ZNF789 Silent p.S83S 0.09 TCGA-VQ-AA6D-01 7 99691905 99691905 T C MCM7 Missense_Mutation p.Y580C 0.09 deleterious(0) probably_damaging(0.98) TCGA-VQ-AA6D-01 7 99697677 99697677 T C MCM7 Missense_Mutation p.D24G 0.10 tolerated(0.11) benign(0.001) TCGA-VQ-AA6D-01 8 109796967 109796967 C T TMEM74 Missense_Mutation p.E121K 0.10 deleterious(0.02) possibly_damaging(0.743) TCGA-VQ-AA6D-01 8 113326744 113326750 ATGCTCC - CSMD3 Frame_Shift_Del p.W2486Ffs*13 0.17 TCGA-VQ-AA6D-01 8 11637362 11637362 C T NEIL2 Missense_Mutation p.R132C 0.10 tolerated(0.07) benign(0.04) TCGA-VQ-AA6D-01 8 117950568 117950568 C T AARD Missense_Mutation p.P29L 0.23 deleterious(0.01) benign(0.116) TCGA-VQ-AA6D-01 8 11841943 11841943 C T DEFB135 Silent p.P26P 0.25 TCGA-VQ-AA6D-01 8 121706000 121706000 G A SNTB1 Silent p.D240D 0.18 TCGA-VQ-AA6D-01 8 124027687 124027687 T C DERL1 Nonstop_Mutation p.*252Wext*47 0.07 TCGA-VQ-AA6D-01 8 125081705 125081705 G A FER1L6 Missense_Mutation p.A1275T 0.07 tolerated(0.12) benign(0.097) TCGA-VQ-AA6D-01 8 134474210 134474210 T C ST3GAL1 Missense_Mutation p.K253E 0.06 probably_damaging(0.999) TCGA-VQ-AA6D-01 8 141310604 141310604 C T TRAPPC9 Missense_Mutation p.A676T 0.06 tolerated(0.4) benign(0.236) TCGA-VQ-AA6D-01 8 144689282 144689282 C T PYCRL Silent p.T71T 0.11 TCGA-VQ-AA6D-01 8 144900117 144900117 G A PUF60 Silent p.S244S 0.14 TCGA-VQ-AA6D-01 8 144942749 144942749 G A EPPK1 Missense_Mutation p.A1558V 0.17 benign(0.021) TCGA-VQ-AA6D-01 8 144995907 144995907 G A PLEC Silent p.G2831G 0.07 TCGA-VQ-AA6D-01 8 144998080 144998080 G A PLEC Missense_Mutation p.A2143V 0.23 unknown(0) TCGA-VQ-AA6D-01 8 145113155 145113155 G T OPLAH Silent p.G312G 0.23 TCGA-VQ-AA6D-01 8 145726137 145726137 G A PPP1R16A Silent p.T300T 0.12 TCGA-VQ-AA6D-01 8 145737702 145737702 G A RECQL4 Missense_Mutation p.R1021W 0.29 tolerated(0.2) benign(0.003) TCGA-VQ-AA6D-01 8 145770954 145770954 T C ARHGAP39 Missense_Mutation p.T734A 0.29 deleterious(0.04) possibly_damaging(0.882) TCGA-VQ-AA6D-01 8 1496992 1496992 G A DLGAP2 Missense_Mutation p.A45T 0.43 tolerated(1) benign(0.001) TCGA-VQ-AA6D-01 8 1728464 1728464 A G CLN8 Missense_Mutation p.I198V 0.12 tolerated(0.47) benign(0.016) TCGA-VQ-AA6D-01 8 17830130 17830130 A G PCM1 Missense_Mutation p.K1293E 0.14 deleterious(0) possibly_damaging(0.693) TCGA-VQ-AA6D-01 8 22267605 22267605 G A SLC39A14 Missense_Mutation p.A202T 0.06 deleterious(0) probably_damaging(0.997) TCGA-VQ-AA6D-01 8 25297143 25297143 C T KCTD9 Missense_Mutation p.A117T 0.12 deleterious(0) benign(0.287) TCGA-VQ-AA6D-01 8 30703618 30703618 C A TEX15 Missense_Mutation p.K972N 0.28 deleterious(0) probably_damaging(0.913) TCGA-VQ-AA6D-01 8 39872863 39872863 G A IDO2 Silent p.L335L 0.40 TCGA-VQ-AA6D-01 8 51621463 51621463 T C SNTG1 Silent p.C403C 0.44 TCGA-VQ-AA6D-01 8 52321758 52321758 A C PXDNL Missense_Mutation p.F809C 0.58 deleterious(0) probably_damaging(1) TCGA-VQ-AA6D-01 8 54906230 54906230 T C TCEA1 Silent p.E106E 0.12 TCGA-VQ-AA6D-01 8 55371678 55371678 G A SOX17 Missense_Mutation p.R123Q 0.40 deleterious(0) probably_damaging(0.979) TCGA-VQ-AA6D-01 8 55533838 55533838 C T RP1 Silent p.Y104Y 0.24 TCGA-VQ-AA6D-01 8 57026133 57026133 T G MOS Missense_Mutation p.I137L 0.08 deleterious(0.05) possibly_damaging(0.728) TCGA-VQ-AA6D-01 8 67577107 67577107 C T VCPIP1 Missense_Mutation p.G696E 0.33 deleterious(0) probably_damaging(0.999) TCGA-VQ-AA6D-01 8 93029511 93029511 G A RUNX1T1 Missense_Mutation p.P68S 0.28 tolerated(0.09) probably_damaging(0.974) TCGA-VQ-AA6D-01 8 97172646 97172646 A C GDF6 Missense_Mutation p.V92G 0.16 deleterious(0) possibly_damaging(0.876) TCGA-VQ-AA6D-01 8 99039868 99039868 G A MATN2 Missense_Mutation p.A723T 0.14 tolerated(0.3) benign(0.008) TCGA-VQ-AA6D-01 8 99440834 99440834 G A KCNS2 Silent p.L209L 0.07 TCGA-VQ-AA6D-01 9 101235542 101235542 C T GABBR2 Silent p.T295T 0.21 TCGA-VQ-AA6D-01 9 103348211 103348211 C T MURC Silent p.G191G 0.25 TCGA-VQ-AA6D-01 9 104341539 104341539 C A GRIN3A Missense_Mutation p.R957M 0.06 deleterious(0) possibly_damaging(0.838) TCGA-VQ-AA6D-01 9 116046621 116046621 C G PRPF4 Missense_Mutation p.S235C 0.38 deleterious(0) probably_damaging(0.984) TCGA-VQ-AA6D-01 9 116812388 116812388 C T ZNF618 Missense_Mutation p.R843W 0.07 deleterious(0.01) probably_damaging(0.963) TCGA-VQ-AA6D-01 9 123222925 123222925 G A CDK5RAP2 Silent p.D709D 0.59 TCGA-VQ-AA6D-01 9 123595671 123595671 G A PSMD5 Silent p.H79H 0.41 TCGA-VQ-AA6D-01 9 124929165 124929165 G A MORN5 Missense_Mutation p.A56T 0.32 deleterious(0.04) possibly_damaging(0.715) TCGA-VQ-AA6D-01 9 125281675 125281675 C T OR1J4 Nonsense_Mutation p.Q86* 0.11 TCGA-VQ-AA6D-01 9 125315711 125315711 C T OR1N2 Missense_Mutation p.A88V 0.24 tolerated(0.35) benign(0.005) TCGA-VQ-AA6D-01 9 125437631 125437631 A G OR1L3 Missense_Mutation p.T75A 0.09 deleterious(0) possibly_damaging(0.529) TCGA-VQ-AA6D-01 9 125437833 125437833 T G OR1L3 Missense_Mutation p.V142G 0.15 tolerated(0.24) possibly_damaging(0.598) TCGA-VQ-AA6D-01 9 126146008 126146008 C T DENND1A Missense_Mutation p.G588S 0.19 tolerated(1) benign(0.008) TCGA-VQ-AA6D-01 9 127101857 127101857 G A NEK6 Silent p.T244T 0.10 TCGA-VQ-AA6D-01 9 127572789 127572789 C T OLFML2A 3'UTR 0.56 TCGA-VQ-AA6D-01 9 130929066 130929066 T C CIZ1 Missense_Mutation p.K820R 0.12 tolerated(0.13) benign(0.165) TCGA-VQ-AA6D-01 9 138675906 138675906 T A KCNT1 Missense_Mutation p.F960I 0.12 deleterious(0) probably_damaging(1) TCGA-VQ-AA6D-01 9 139256580 139256580 C T DNLZ Missense_Mutation p.G141S 0.11 tolerated(0.16) benign(0.023) TCGA-VQ-AA6D-01 9 139310896 139310896 A G PMPCA Intron 0.15 TCGA-VQ-AA6D-01 9 139739883 139739883 G A C9orf172 Silent p.P339P 0.20 TCGA-VQ-AA6D-01 9 139887678 139887678 T C C9orf142 Missense_Mutation p.L135P 0.10 deleterious(0) probably_damaging(1) TCGA-VQ-AA6D-01 9 140438221 140438221 C T PNPLA7 Missense_Mutation p.R107Q 0.07 tolerated(0.12) benign(0.284) TCGA-VQ-AA6D-01 9 140952642 140952642 C T CACNA1B Silent p.I1416I 0.36 TCGA-VQ-AA6D-01 9 16437206 16437206 T A BNC2 Missense_Mutation p.N329I 0.38 deleterious(0) probably_damaging(0.916) TCGA-VQ-AA6D-01 9 19372037 19372037 G A DENND4C Missense_Mutation p.A1866T 0.06 deleterious(0) possibly_damaging(0.682) TCGA-VQ-AA6D-01 9 20414316 20414316 G A MLLT3 Silent p.S176S 0.10 TCGA-VQ-AA6D-01 9 21186808 21186808 T C IFNA4 3'UTR 0.25 TCGA-VQ-AA6D-01 9 21305053 21305053 C T IFNA5 Missense_Mutation p.G68D 0.37 deleterious(0.05) possibly_damaging(0.49) TCGA-VQ-AA6D-01 9 21350383 21350383 T G IFNA6 Missense_Mutation p.R168S 0.09 deleterious(0.01) probably_damaging(0.911) TCGA-VQ-AA6D-01 9 32481348 32481348 G A DDX58 Missense_Mutation p.S543L 0.42 deleterious(0.01) benign(0.392) TCGA-VQ-AA6D-01 9 34976586 34976586 G - KIAA1045 Frame_Shift_Del p.D235Tfs*6 0.29 TCGA-VQ-AA6D-01 9 72338425 72338426 - TG PTAR1 Frame_Shift_Ins p.S255Tfs*4 0.21 TCGA-VQ-AA6D-01 9 732731 732731 A G KANK1 Intron 0.43 TCGA-VQ-AA6D-01 9 74300022 74300022 C T TMEM2 3'UTR 0.40 TCGA-VQ-AA6D-01 9 75406825 75406825 A G TMC1 Silent p.L416L 0.23 TCGA-VQ-AA6D-01 9 84235397 84235397 T G TLE1 Missense_Mutation p.I224L 0.38 tolerated(0.38) benign(0.001) TCGA-VQ-AA6D-01 9 94487125 94487125 T C ROR2 Missense_Mutation p.M551V 0.30 deleterious(0) probably_damaging(0.931) TCGA-VQ-AA6D-01 9 95481848 95481848 G A BICD2 Missense_Mutation p.A360V 0.21 tolerated(0.67) benign(0.002) TCGA-VQ-AA6D-01 9 95780430 95780430 G A FGD3 Missense_Mutation p.V430I 0.19 tolerated(0.47) benign(0.015) TCGA-VQ-AA6D-01 9 96021245 96021245 G A WNK2 Silent p.T805T 0.11 TCGA-VQ-AA6D-01 9 99252344 99252344 C T HABP4 3'UTR 0.42 TCGA-VQ-AA6D-01 9 99580625 99580625 T G ZNF782 Missense_Mutation p.K560N 0.12 deleterious(0.01) benign(0.37) TCGA-VQ-AA6D-01 X 100509876 100509876 G A DRP2 Missense_Mutation p.A715T 0.50 tolerated(0.2) benign(0.252) TCGA-VQ-AA6D-01 X 100536708 100536709 - T TAF7L Frame_Shift_Ins p.V241Gfs*3 0.41 TCGA-VQ-AA6D-01 X 100646028 100646028 A C RPL36A-HNRNPH2 Silent p.A10A 0.24 TCGA-VQ-AA6D-01 X 100652882 100652882 C A GLA Missense_Mutation p.R402M 0.08 tolerated(0.1) benign(0.025) TCGA-VQ-AA6D-01 X 10163072 10163072 T - CLCN4 Frame_Shift_Del p.F123Lfs*18 0.20 TCGA-VQ-AA6D-01 X 10442695 10442695 T G MID1 Missense_Mutation p.K370T 0.14 deleterious(0.01) possibly_damaging(0.597) TCGA-VQ-AA6D-01 X 105278233 105278233 A T SERPINA7 Missense_Mutation p.L346H 0.43 deleterious(0) probably_damaging(0.997) TCGA-VQ-AA6D-01 X 11793242 11793242 C T MSL3 3'UTR 0.17 TCGA-VQ-AA6D-01 X 118222850 118222850 T C KIAA1210 Silent p.S781S 0.29 TCGA-VQ-AA6D-01 X 119010520 119010520 A - NDUFA1 3'UTR 0.13 TCGA-VQ-AA6D-01 X 119037282 119037282 C T AKAP14 Silent p.Y32Y 0.39 TCGA-VQ-AA6D-01 X 12837691 12837691 C T PRPS2 Missense_Mutation p.A202V 0.11 deleterious(0.03) benign(0.216) TCGA-VQ-AA6D-01 X 130417109 130417109 T C IGSF1 Missense_Mutation p.E266G 0.05 tolerated(0.1) benign(0.341) TCGA-VQ-AA6D-01 X 139866061 139866061 G C CDR1 Silent p.P157P 0.05 TCGA-VQ-AA6D-01 X 148797995 148797995 C T MAGEA11 Silent p.D283D 0.17 TCGA-VQ-AA6D-01 X 149013805 149013805 G T MAGEA8 Missense_Mutation p.W253C 0.41 deleterious(0.01) probably_damaging(0.978) TCGA-VQ-AA6D-01 X 153039463 153039463 G T PLXNB3 Silent p.L1166L 0.38 TCGA-VQ-AA6D-01 X 153588106 153588106 C A FLNA Nonsense_Mutation p.E1325* 0.37 TCGA-VQ-AA6D-01 X 153592520 153592520 C T FLNA Missense_Mutation p.C717Y 0.05 tolerated(1) benign(0.184) TCGA-VQ-AA6D-01 X 153628673 153628673 C T RPL10 Intron 0.09 TCGA-VQ-AA6D-01 X 155003724 155003724 G A SPRY3 Missense_Mutation p.R64H 0.13 tolerated(0.14) benign(0.012) TCGA-VQ-AA6D-01 X 15619136 15619136 C T ACE2 Intron 0.19 TCGA-VQ-AA6D-01 X 18836204 18836204 T C PPEF1 Missense_Mutation p.V481A 0.11 deleterious(0) benign(0.028) TCGA-VQ-AA6D-01 X 18970641 18970641 G A PHKA2 Nonsense_Mutation p.R86* 0.24 TCGA-VQ-AA6D-01 X 2407839 2407839 G T ZBED1 Missense_Mutation p.L308M 0.05 deleterious(0.01) probably_damaging(0.944) TCGA-VQ-AA6D-01 X 24094927 24094927 C T EIF2S3 3'UTR 0.11 TCGA-VQ-AA6D-01 X 29417401 29417401 A C IL1RAPL1 Silent p.R227R 0.29 TCGA-VQ-AA6D-01 X 302052 302052 T - PPP2R3B Frame_Shift_Del p.T389Hfs*70 0.09 TCGA-VQ-AA6D-01 X 3235678 3235678 G A MXRA5 Missense_Mutation p.A2015V 0.11 tolerated(0.16) possibly_damaging(0.692) TCGA-VQ-AA6D-01 X 32834600 32834600 A G DMD Missense_Mutation p.L172P 0.45 probably_damaging(0.989) TCGA-VQ-AA6D-01 X 34960939 34960939 G A FAM47B 5'UTR 0.25 TCGA-VQ-AA6D-01 X 37029267 37029267 T C FAM47C Silent p.S928S 0.24 TCGA-VQ-AA6D-01 X 37553690 37553690 C G XK Missense_Mutation p.R133G 0.28 deleterious(0) probably_damaging(1) TCGA-VQ-AA6D-01 X 41025363 41025363 C T USP9X Nonsense_Mutation p.R742* 0.42 TCGA-VQ-AA6D-01 X 47315734 47315734 G A ZNF41 Missense_Mutation p.P46S 0.16 tolerated(0.77) benign(0.003) TCGA-VQ-AA6D-01 X 47445027 47445027 C A TIMP1 Silent p.G138G 0.23 TCGA-VQ-AA6D-01 X 48337428 48337428 G A FTSJ1 Silent p.L95L 0.10 TCGA-VQ-AA6D-01 X 48368145 48368145 G A PORCN 5'Flank 0.53 TCGA-VQ-AA6D-01 X 51239289 51239289 C T NUDT11 Missense_Mutation p.C3Y 0.22 tolerated(0.18) benign(0.021) TCGA-VQ-AA6D-01 X 51488505 51488505 G A GSPT2 Missense_Mutation p.E595K 0.37 deleterious(0) probably_damaging(0.999) TCGA-VQ-AA6D-01 X 54209006 54209006 G A FAM120C Missense_Mutation p.P209L 0.44 deleterious(0) probably_damaging(0.999) TCGA-VQ-AA6D-01 X 57162685 57162685 A T SPIN2A Missense_Mutation p.S116T 0.16 tolerated(0.69) benign(0.004) TCGA-VQ-AA6D-01 X 5947452 5947452 T G NLGN4X Missense_Mutation p.K165T 0.22 tolerated(0.25) benign(0.108) TCGA-VQ-AA6D-01 X 64953131 64953131 A - MSN Frame_Shift_Del p.A264Pfs*42 0.13 TCGA-VQ-AA6D-01 X 69397513 69397513 T G DGAT2L6 Missense_Mutation p.F27L 0.13 tolerated(1) benign(0.001) TCGA-VQ-AA6D-01 X 70473060 70473060 G T ZMYM3 Missense_Mutation p.P16T 0.32 tolerated_low_confidence(0.11) probably_damaging(0.987) TCGA-VQ-AA6D-01 X 7177509 7177509 G A STS Missense_Mutation p.G173R 0.08 deleterious(0.04) probably_damaging(0.998) TCGA-VQ-AA6D-01 X 73963124 73963124 T A KIAA2022 Missense_Mutation p.N423I 0.53 deleterious(0.02) benign(0.413) TCGA-VQ-AA6D-01 X 83319285 83319285 T G RPS6KA6 Nonstop_Mutation p.*746Yext*6 0.36 TCGA-VQ-AA6D-01 X 84606433 84606433 C A POF1B Nonsense_Mutation p.G155* 0.22 TCGA-VQ-AA6D-01 X 84606434 84606434 T A POF1B Missense_Mutation p.R154S 0.24 deleterious_low_confidence(0) possibly_damaging(0.713) TCGA-VQ-AA6D-01 X 85403754 85403754 A C DACH2 Missense_Mutation p.N44H 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.819) TCGA-VQ-AA6F-01 10 105086368 105086368 G A PCGF6 Nonsense_Mutation p.R278* 0.05 TCGA-VQ-AA6F-01 10 129902577 129902577 C T MKI67 Silent p.T2509T 0.11 TCGA-VQ-AA6F-01 11 111575769 111575769 G A SIK2 Missense_Mutation p.R336H 0.08 deleterious(0) probably_damaging(0.999) TCGA-VQ-AA6F-01 11 32460437 32460437 C G WT1 5'Flank 0.09 TCGA-VQ-AA6F-01 11 50003607 50003607 G T OR4C12 Missense_Mutation p.A144E 0.13 deleterious_low_confidence(0.03) benign(0.079) TCGA-VQ-AA6F-01 11 67161167 67161167 C T RAD9A Missense_Mutation p.R119W 0.09 deleterious(0.02) probably_damaging(0.968) TCGA-VQ-AA6F-01 12 108685575 108685575 T C CMKLR1 3'UTR 0.17 TCGA-VQ-AA6F-01 12 108913126 108913126 C A FICD Missense_Mutation p.F417L 0.09 deleterious(0.03) benign(0.32) TCGA-VQ-AA6F-01 12 122481896 122481896 G A BCL7A Missense_Mutation p.D126N 0.09 tolerated(0.09) benign(0.041) TCGA-VQ-AA6F-01 12 68551836 68551836 A G IFNG Missense_Mutation p.F75L 0.06 tolerated(0.08) probably_damaging(0.989) TCGA-VQ-AA6F-01 12 81111013 81111013 G A MYF5 Silent p.A57A 0.08 TCGA-VQ-AA6F-01 13 53418571 53418571 T G PCDH8 3'UTR 0.18 TCGA-VQ-AA6F-01 14 95906068 95906068 C T SYNE3 Silent p.A709A 0.10 TCGA-VQ-AA6F-01 15 49031029 49031029 G A CEP152 Missense_Mutation p.S1517L 0.07 tolerated(0.08) probably_damaging(0.957) TCGA-VQ-AA6F-01 16 2354019 2354019 A T ABCA3 Missense_Mutation p.V473D 0.15 deleterious(0) probably_damaging(0.952) TCGA-VQ-AA6F-01 16 31234240 31234240 G T TRIM72 Missense_Mutation p.R278M 0.25 deleterious(0) possibly_damaging(0.653) TCGA-VQ-AA6F-01 16 67184137 67184137 G T B3GNT9 Missense_Mutation p.F84L 0.26 deleterious(0.01) probably_damaging(0.931) TCGA-VQ-AA6F-01 17 10441020 10441020 C T MYH2 Missense_Mutation p.G517R 0.23 deleterious(0.01) probably_damaging(1) TCGA-VQ-AA6F-01 17 33690208 33690208 A G SLFN11 Missense_Mutation p.F207L 0.15 deleterious(0.03) benign(0.263) TCGA-VQ-AA6F-01 17 40370281 40370281 G A STAT5B Missense_Mutation p.R353C 0.15 deleterious(0) possibly_damaging(0.854) TCGA-VQ-AA6F-01 17 61901743 61901743 G A FTSJ3 Missense_Mutation p.R316W 0.23 deleterious(0) probably_damaging(0.99) TCGA-VQ-AA6F-01 17 7491817 7491817 T A SOX15 Missense_Mutation p.Q194L 0.26 deleterious_low_confidence(0.01) benign(0.079) TCGA-VQ-AA6F-01 17 79813368 79813368 C T P4HB Silent p.L149L 0.12 TCGA-VQ-AA6F-01 18 14542868 14542868 G A POTEC Missense_Mutation p.T93M 0.16 tolerated_low_confidence(0.11) benign(0) TCGA-VQ-AA6F-01 18 40323639 40323639 C A RIT2 Missense_Mutation p.G158V 0.22 deleterious(0.03) benign(0.099) TCGA-VQ-AA6F-01 19 1460807 1460807 T C APC2 Missense_Mutation p.M491T 0.11 possibly_damaging(0.646) TCGA-VQ-AA6F-01 19 36047864 36047864 C T ATP4A Missense_Mutation p.R607Q 0.07 deleterious(0.02) probably_damaging(0.996) TCGA-VQ-AA6F-01 19 36159455 36159455 G A UPK1A Missense_Mutation p.A62T 0.06 deleterious(0.02) probably_damaging(0.999) TCGA-VQ-AA6F-01 19 58967577 58967577 G A ZNF324B Silent p.E422E 0.31 TCGA-VQ-AA6F-01 1 248263421 248263421 C A OR2L13 Silent p.I248I 0.13 TCGA-VQ-AA6F-01 1 27092749 27092782 ATGGGAACTGGACCTCCTTATGGACAAGGGATTA - ARID1A Frame_Shift_Del p.M924Ifs*6 0.32 TCGA-VQ-AA6F-01 1 50659447 50659447 C T ELAVL4 Missense_Mutation p.A139V 0.05 deleterious(0) probably_damaging(0.996) TCGA-VQ-AA6F-01 1 78390891 78390891 A G NEXN Missense_Mutation p.T156A 0.09 tolerated_low_confidence(0.11) benign(0.08) TCGA-VQ-AA6F-01 20 422484 422484 T C TBC1D20 Intron 0.11 TCGA-VQ-AA6F-01 20 47317300 47317300 C T PREX1 Missense_Mutation p.R303Q 0.14 deleterious(0) probably_damaging(0.917) TCGA-VQ-AA6F-01 20 58577869 58577869 G A CDH26 Missense_Mutation p.G723D 0.04 tolerated(0.06) possibly_damaging(0.858) TCGA-VQ-AA6F-01 21 32624209 32624209 C T TIAM1 Silent p.P420P 0.17 TCGA-VQ-AA6F-01 22 18354693 18354693 C T MICAL3 Missense_Mutation p.E780K 0.40 probably_damaging(0.999) TCGA-VQ-AA6F-01 22 32923971 32923971 T G SYN3 Missense_Mutation p.K418Q 0.20 tolerated(0.56) unknown(0) TCGA-VQ-AA6F-01 2 211465311 211465311 G T CPS1 Nonsense_Mutation p.E534* 0.06 TCGA-VQ-AA6F-01 2 220088827 220088827 C T ATG9A Splice_Site p.X422_splice 0.39 TCGA-VQ-AA6F-01 2 55756107 55756107 C A CCDC104 Silent p.R126R 0.10 TCGA-VQ-AA6F-01 3 142567194 142567194 G A PCOLCE2 Missense_Mutation p.R105C 0.05 deleterious(0) probably_damaging(1) TCGA-VQ-AA6F-01 3 168834302 168834302 T C MECOM Missense_Mutation p.K330R 0.06 deleterious(0.03) probably_damaging(0.998) TCGA-VQ-AA6F-01 3 47450671 47450671 A C PTPN23 Missense_Mutation p.Q554P 0.09 unknown(0) TCGA-VQ-AA6F-01 4 107847029 107847029 G T DKK2 Nonsense_Mutation p.C100* 0.15 TCGA-VQ-AA6F-01 4 149357083 149357083 A T NR3C2 Silent p.V310V 0.16 TCGA-VQ-AA6F-01 4 149357085 149357085 C A NR3C2 Missense_Mutation p.V310F 0.14 deleterious_low_confidence(0.01) benign(0.13) TCGA-VQ-AA6F-01 4 6864664 6864664 C T KIAA0232 Missense_Mutation p.S852L 0.17 deleterious(0.02) benign(0.165) TCGA-VQ-AA6F-01 5 140167380 140167380 G A PCDHA1 Missense_Mutation p.R502H 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.619) TCGA-VQ-AA6F-01 6 49587023 49587024 GG - RHAG Frame_Shift_Del p.T70Ifs*39 0.12 TCGA-VQ-AA6F-01 6 51913341 51913341 G A PKHD1 Missense_Mutation p.P786S 0.06 deleterious(0.02) benign(0.244) TCGA-VQ-AA6F-01 7 121698980 121698980 A G PTPRZ1 Missense_Mutation p.M2219V 0.10 tolerated(0.41) benign(0.001) TCGA-VQ-AA6F-01 7 1997278 1997278 G A MAD1L1 Missense_Mutation p.R528W 0.18 deleterious(0) possibly_damaging(0.898) TCGA-VQ-AA6F-01 7 71488749 71488749 C T CALN1 Missense_Mutation p.G132S 0.07 deleterious(0) probably_damaging(0.915) TCGA-VQ-AA6F-01 7 87763651 87763651 A G ADAM22 Missense_Mutation p.K362R 0.08 tolerated(0.13) benign(0.217) TCGA-VQ-AA6F-01 7 88963128 88963128 G A ZNF804B Missense_Mutation p.E278K 0.05 tolerated(0.21) benign(0.037) TCGA-VQ-AA6F-01 7 92731623 92731623 G T SAMD9 Missense_Mutation p.S1263Y 0.07 deleterious(0.03) benign(0.366) TCGA-VQ-AA6F-01 8 113585757 113585757 C A CSMD3 Missense_Mutation p.D1339Y 0.05 tolerated(0.08) probably_damaging(0.974) TCGA-VQ-AA6F-01 8 133051317 133051317 C G OC90 Missense_Mutation p.E171Q 0.09 deleterious(0.01) benign(0.409) TCGA-VQ-AA6F-01 8 41906305 41906305 G A KAT6A Missense_Mutation p.S64L 0.20 benign(0.357) TCGA-VQ-AA6F-01 9 21187179 21187179 C T IFNA4 Missense_Mutation p.D118N 0.12 tolerated(0.08) benign(0.175) TCGA-VQ-AA6F-01 9 37441608 37441608 T C ZBTB5 Missense_Mutation p.N314S 0.10 tolerated_low_confidence(1) benign(0.009) TCGA-VQ-AA6F-01 X 128638729 128638729 G C SMARCA1 Silent p.L383L 0.27 TCGA-VQ-AA6G-01 10 101606754 101606754 C T ABCC2 Missense_Mutation p.L1395F 0.31 deleterious(0) probably_damaging(1) TCGA-VQ-AA6G-01 10 118394455 118394455 C A PNLIPRP2 Nonsense_Mutation p.Y307* 0.23 TCGA-VQ-AA6G-01 10 119134303 119134303 G A PDZD8 Missense_Mutation p.R146W 0.08 deleterious(0) probably_damaging(0.999) TCGA-VQ-AA6G-01 10 135350653 135350653 G T CYP2E1 Missense_Mutation p.A352S 0.39 deleterious(0) possibly_damaging(0.89) TCGA-VQ-AA6G-01 11 124482877 124482877 G C PANX3 Silent p.G61G 0.11 TCGA-VQ-AA6G-01 11 125488282 125488282 C A STT3A Missense_Mutation p.L597I 0.32 deleterious(0.02) probably_damaging(0.966) TCGA-VQ-AA6G-01 11 17111325 17111325 G A PIK3C2A Missense_Mutation p.T1674M 0.31 tolerated(0.09) probably_damaging(0.999) TCGA-VQ-AA6G-01 11 36598014 36598014 T C RAG1 3'UTR 0.23 TCGA-VQ-AA6G-01 11 48346858 48346858 C T OR4C3 Silent p.C122C 0.15 TCGA-VQ-AA6G-01 11 49597796 49597796 A C RP11-707M1.1 RNA 0.39 TCGA-VQ-AA6G-01 11 55659177 55659177 G A TRIM51 3'UTR 0.08 TCGA-VQ-AA6G-01 11 5701240 5701240 A C TRIM5 Silent p.P56P 0.05 TCGA-VQ-AA6G-01 11 6290998 6290998 G A CCKBR Missense_Mutation p.R84H 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-VQ-AA6G-01 11 67206240 67206240 G A CORO1B Missense_Mutation p.R416W 0.43 deleterious(0) probably_damaging(0.924) TCGA-VQ-AA6G-01 11 78369428 78369428 C T TENM4 Missense_Mutation p.R2662H 0.25 deleterious(0) possibly_damaging(0.725) TCGA-VQ-AA6G-01 11 803329 803329 G A PIDD Missense_Mutation p.T185M 0.30 tolerated(0.1) benign(0.042) TCGA-VQ-AA6G-01 12 123052875 123052875 G A KNTC1 Missense_Mutation p.E558K 0.29 tolerated(0.09) probably_damaging(0.956) TCGA-VQ-AA6G-01 12 125591771 125591771 C T AACS Missense_Mutation p.S291L 0.06 deleterious(0.02) possibly_damaging(0.641) TCGA-VQ-AA6G-01 12 40637449 40637449 A C LRRK2 Missense_Mutation p.E268D 0.28 tolerated(0.15) benign(0.242) TCGA-VQ-AA6G-01 12 40761476 40761476 T C LRRK2 Missense_Mutation p.I2498T 0.41 tolerated(0.67) benign(0.002) TCGA-VQ-AA6G-01 12 54686313 54686313 G A NFE2 Missense_Mutation p.R323C 0.27 deleterious(0) probably_damaging(0.996) TCGA-VQ-AA6G-01 12 54799107 54799107 G A ITGA5 Silent p.D356D 0.33 TCGA-VQ-AA6G-01 12 6675295 6675295 T C NOP2 Missense_Mutation p.N149S 0.17 tolerated(0.65) benign(0.004) TCGA-VQ-AA6G-01 12 7640502 7640502 T G CD163 Silent p.G534G 0.27 TCGA-VQ-AA6G-01 12 76444323 76444323 A T NAP1L1 Missense_Mutation p.D349E 0.07 tolerated(0.12) benign(0.248) TCGA-VQ-AA6G-01 12 7984210 7984210 G A SLC2A14 Missense_Mutation p.R111C 0.34 deleterious(0.01) possibly_damaging(0.481) TCGA-VQ-AA6G-01 13 101797194 101797194 C A NALCN Silent p.L631L 0.21 TCGA-VQ-AA6G-01 13 20717262 20717262 T G GJA3 Missense_Mutation p.T56P 0.33 deleterious(0) probably_damaging(1) TCGA-VQ-AA6G-01 13 61986230 61986230 C G PCDH20 Missense_Mutation p.A668P 0.24 tolerated(0.09) possibly_damaging(0.677) TCGA-VQ-AA6G-01 14 103342798 103342798 C T TRAF3 Missense_Mutation p.A169V 0.52 tolerated(0.2) benign(0.067) TCGA-VQ-AA6G-01 14 63483614 63483614 A T KCNH5 Missense_Mutation p.N44K 0.44 deleterious(0) probably_damaging(0.998) TCGA-VQ-AA6G-01 15 25307555 25307555 T C SNORD116-5 RNA 0.38 TCGA-VQ-AA6G-01 15 25472070 25472070 G T SNORD115-33 5'Flank 0.29 TCGA-VQ-AA6G-01 15 45561706 45561706 G T SLC28A2 Missense_Mutation p.W513C 0.28 deleterious(0.01) probably_damaging(1) TCGA-VQ-AA6G-01 15 72954596 72954596 A C GOLGA6B Missense_Mutation p.K284T 0.11 deleterious(0) benign(0) TCGA-VQ-AA6G-01 15 73009186 73009186 G T BBS4 Missense_Mutation p.D134Y 0.08 deleterious(0) probably_damaging(1) TCGA-VQ-AA6G-01 15 78922233 78922233 G A CHRNB4 Silent p.N138N 0.21 TCGA-VQ-AA6G-01 15 79066976 79066976 C T ADAMTS7 Silent p.V622V 0.09 TCGA-VQ-AA6G-01 15 81592622 81592622 C A IL16 Missense_Mutation p.S985R 0.34 deleterious(0) possibly_damaging(0.846) TCGA-VQ-AA6G-01 16 1391375 1391375 C T BAIAP3 Missense_Mutation p.R241C 0.50 deleterious(0) probably_damaging(0.999) TCGA-VQ-AA6G-01 16 19590335 19590335 A T C16orf62 Intron 0.30 TCGA-VQ-AA6G-01 16 2042694 2042694 G T SYNGR3 Missense_Mutation p.R132L 0.20 tolerated(0.71) benign(0.339) TCGA-VQ-AA6G-01 16 2048486 2048486 G A ZNF598 Missense_Mutation p.T821M 0.34 probably_damaging(0.958) TCGA-VQ-AA6G-01 16 21261578 21261578 A G ANKS4B Missense_Mutation p.M231V 0.27 tolerated(0.16) benign(0.164) TCGA-VQ-AA6G-01 16 2235379 2235379 G A CASKIN1 Missense_Mutation p.P360L 0.26 benign(0.002) TCGA-VQ-AA6G-01 16 4802667 4802667 C T ZNF500 Missense_Mutation p.E385K 0.35 tolerated(0.07) possibly_damaging(0.774) TCGA-VQ-AA6G-01 16 58011938 58011938 G A TEPP Missense_Mutation p.R128H 0.21 tolerated(0.28) benign(0.023) TCGA-VQ-AA6G-01 16 84229769 84229769 C T ADAD2 Missense_Mutation p.A522V 0.29 tolerated(0.4) benign(0.421) TCGA-VQ-AA6G-01 17 10214454 10214454 T C MYH13 Missense_Mutation p.K1541R 0.34 tolerated(0.08) benign(0.017) TCGA-VQ-AA6G-01 17 27382857 27382857 C T PIPOX Silent p.L331L 0.36 TCGA-VQ-AA6G-01 17 33463487 33463487 G A NLE1 Silent p.H286H 0.06 TCGA-VQ-AA6G-01 17 40379660 40379660 T G STAT5B Missense_Mutation p.T58P 0.30 tolerated(0.1) probably_damaging(0.966) TCGA-VQ-AA6G-01 17 42478329 42478329 T C GPATCH8 Silent p.S372S 0.09 TCGA-VQ-AA6G-01 17 46655704 46655704 A G HOXB4 5'UTR 0.17 TCGA-VQ-AA6G-01 17 48271380 48271380 C T COL1A1 Missense_Mutation p.R564H 0.20 unknown(0) TCGA-VQ-AA6G-01 17 49713333 49713333 T G CA10 Missense_Mutation p.E224D 0.25 tolerated(0.59) benign(0.016) TCGA-VQ-AA6G-01 17 67148533 67148533 C A ABCA10 Missense_Mutation p.R1409L 0.19 deleterious(0.01) possibly_damaging(0.878) TCGA-VQ-AA6G-01 17 68172179 68172179 G T KCNJ2 Missense_Mutation p.E333D 0.40 tolerated(0.11) benign(0.107) TCGA-VQ-AA6G-01 17 72249248 72249248 G T TTYH2 Missense_Mutation p.D430Y 0.31 deleterious(0) probably_damaging(0.964) TCGA-VQ-AA6G-01 17 7578190 7578190 T C TP53 Missense_Mutation p.Y220C 0.43 deleterious(0) probably_damaging(1) TCGA-VQ-AA6G-01 17 79826720 79826720 C A ARHGDIA 3'UTR 0.32 TCGA-VQ-AA6G-01 17 80391605 80391605 C T HEXDC Silent p.H118H 0.32 TCGA-VQ-AA6G-01 17 9632212 9632212 C T USP43 Missense_Mutation p.P1093S 0.34 tolerated(0.16) benign(0.029) TCGA-VQ-AA6G-01 18 21422449 21422449 G A LAMA3 Missense_Mutation p.A1143T 0.07 benign(0.005) TCGA-VQ-AA6G-01 18 23845151 23845151 A C TAF4B Missense_Mutation p.S121R 0.45 deleterious(0) possibly_damaging(0.774) TCGA-VQ-AA6G-01 18 25565720 25565720 G A CDH2 Missense_Mutation p.P583S 0.31 deleterious(0.01) possibly_damaging(0.594) TCGA-VQ-AA6G-01 18 60645679 60645679 G A PHLPP1 Missense_Mutation p.R1390H 0.67 deleterious(0) probably_damaging(1) TCGA-VQ-AA6G-01 19 15739641 15739641 C A CYP4F8 RNA 0.22 TCGA-VQ-AA6G-01 19 21719208 21719208 A G ZNF429 Missense_Mutation p.K118R 0.34 tolerated(0.1) possibly_damaging(0.468) TCGA-VQ-AA6G-01 19 24309325 24309325 A C ZNF254 Silent p.R175R 0.24 TCGA-VQ-AA6G-01 19 39898794 39898795 CT - ZFP36 Frame_Shift_Del p.C153Sfs*22 0.29 TCGA-VQ-AA6G-01 19 49254119 49254119 C T FUT1 Silent p.P140P 0.45 TCGA-VQ-AA6G-01 19 5997178 5997178 C T RFX2 Missense_Mutation p.G636S 0.37 deleterious(0) probably_damaging(1) TCGA-VQ-AA6G-01 19 9063417 9063417 G T MUC16 Missense_Mutation p.A8010E 0.41 unknown(0) TCGA-VQ-AA6G-01 1 11270918 11270918 G A MTOR Nonsense_Mutation p.R1203* 0.28 TCGA-VQ-AA6G-01 1 149882435 149882435 A G SV2A Missense_Mutation p.W300R 0.21 deleterious(0) probably_damaging(1) TCGA-VQ-AA6G-01 1 150443889 150443889 A G RPRD2 Missense_Mutation p.Y822C 0.13 deleterious_low_confidence(0) possibly_damaging(0.855) TCGA-VQ-AA6G-01 1 152785023 152785023 C A LCE1B Missense_Mutation p.P34H 0.24 tolerated_low_confidence(0.09) unknown(0) TCGA-VQ-AA6G-01 1 160000761 160000761 T C PIGM Missense_Mutation p.T257A 0.32 tolerated(0.34) benign(0.074) TCGA-VQ-AA6G-01 1 172558821 172558821 T G SUCO Silent p.S860S 0.31 TCGA-VQ-AA6G-01 1 177133566 177133566 C A ASTN1 Missense_Mutation p.D83Y 0.38 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-VQ-AA6G-01 1 22048172 22048172 A T USP48 Silent p.V578V 0.33 TCGA-VQ-AA6G-01 1 228247140 228247140 G A WNT3A Missense_Mutation p.V345I 0.42 tolerated(0.67) benign(0.008) TCGA-VQ-AA6G-01 1 23762514 23762514 G A ASAP3 Missense_Mutation p.R527C 0.40 deleterious(0) probably_damaging(1) TCGA-VQ-AA6G-01 1 247769166 247769166 T G OR2G3 Silent p.T93T 0.29 TCGA-VQ-AA6G-01 1 40434385 40434385 G A MFSD2A Silent p.R512R 0.05 TCGA-VQ-AA6G-01 1 43748769 43748769 C T C1orf210 Missense_Mutation p.G10E 0.30 tolerated_low_confidence(0.1) benign(0.13) TCGA-VQ-AA6G-01 1 44422612 44422612 G A IPO13 Nonsense_Mutation p.W412* 0.08 TCGA-VQ-AA6G-01 1 46660274 46660274 C T POMGNT1 Nonsense_Mutation p.W234* 0.31 TCGA-VQ-AA6G-01 20 10630906 10630906 G A JAG1 Missense_Mutation p.T408M 0.31 deleterious(0) probably_damaging(1) TCGA-VQ-AA6G-01 20 37357025 37357025 G A SLC32A1 Missense_Mutation p.V441I 0.29 tolerated(0.17) benign(0.059) TCGA-VQ-AA6G-01 21 28296837 28296837 G A ADAMTS5 Silent p.A776A 0.26 TCGA-VQ-AA6G-01 21 28307005 28307005 G A ADAMTS5 Missense_Mutation p.T490I 0.21 tolerated(0.15) benign(0.001) TCGA-VQ-AA6G-01 21 31692378 31692378 A C KRTAP26-1 5'UTR 0.38 TCGA-VQ-AA6G-01 21 31768495 31768495 C A KRTAP13-1 Missense_Mutation p.P31T 0.19 deleterious(0.02) possibly_damaging(0.841) TCGA-VQ-AA6G-01 21 43522315 43522315 A C UMODL1 Missense_Mutation p.H409P 0.46 tolerated(0.12) possibly_damaging(0.674) TCGA-VQ-AA6G-01 22 32894446 32894446 G A FBXO7 Missense_Mutation p.G500S 0.35 tolerated(0.14) benign(0.01) TCGA-VQ-AA6G-01 22 38201677 38201677 C T H1F0 Silent p.R42R 0.25 TCGA-VQ-AA6G-01 22 41923353 41923359 AGCATGC - ACO2 Frame_Shift_Del p.H673Lfs*25 0.26 TCGA-VQ-AA6G-01 22 46652958 46652958 C T PKDREJ Missense_Mutation p.G2088S 0.17 deleterious(0.02) probably_damaging(0.998) TCGA-VQ-AA6G-01 2 141245197 141245197 T C LRP1B Missense_Mutation p.S3078G 0.26 benign(0.418) TCGA-VQ-AA6G-01 2 153575346 153575346 C T ARL6IP6 Missense_Mutation p.R70C 0.17 deleterious_low_confidence(0.03) benign(0.172) TCGA-VQ-AA6G-01 2 1652001 1652001 G A PXDN Missense_Mutation p.T1184M 0.34 deleterious(0.02) possibly_damaging(0.893) TCGA-VQ-AA6G-01 2 177034089 177034089 G T HOXD3 Nonsense_Mutation p.G83* 0.40 TCGA-VQ-AA6G-01 2 179592368 179592368 C A TTN Missense_Mutation p.C6646F 0.33 TCGA-VQ-AA6G-01 2 179604013 179604013 C A TTN Missense_Mutation p.K4649N 0.28 TCGA-VQ-AA6G-01 2 179701493 179701493 A G CCDC141 Intron 0.33 TCGA-VQ-AA6G-01 2 197964556 197964556 C G ANKRD44 Missense_Mutation p.G362R 0.25 deleterious(0.02) possibly_damaging(0.894) TCGA-VQ-AA6G-01 2 217234558 217234560 CTC - MARCH4 In_Frame_Del p.E142del 0.16 TCGA-VQ-AA6G-01 2 241631376 241631376 G A AQP12A Missense_Mutation p.A16T 0.25 tolerated(0.19) benign(0.048) TCGA-VQ-AA6G-01 2 25967340 25967340 C T ASXL2 Silent p.P622P 0.30 TCGA-VQ-AA6G-01 2 90260107 90260107 C G IGKV1D-8 Missense_Mutation p.I70M 0.10 deleterious(0.01) possibly_damaging(0.689) TCGA-VQ-AA6G-01 3 109023515 109023515 C T DPPA2 Missense_Mutation p.V221I 0.32 tolerated(0.28) benign(0.013) TCGA-VQ-AA6G-01 3 118865554 118865554 G T C3orf30 Missense_Mutation p.R173I 0.09 deleterious(0) probably_damaging(0.975) TCGA-VQ-AA6G-01 3 119886705 119886705 C T GPR156 Missense_Mutation p.R540Q 0.23 deleterious(0.02) benign(0.44) TCGA-VQ-AA6G-01 3 121414893 121414893 C T GOLGB1 Missense_Mutation p.A1493T 0.24 probably_damaging(1) TCGA-VQ-AA6G-01 3 128991108 128991108 A G COPG1 Missense_Mutation p.N670D 0.37 tolerated(0.25) benign(0.066) TCGA-VQ-AA6G-01 3 130290055 130290055 C T COL6A6 Missense_Mutation p.T932M 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-AA6G-01 3 140401463 140401463 G A TRIM42 Silent p.E167E 0.19 TCGA-VQ-AA6G-01 3 14523310 14523310 C T SLC6A6 Silent p.I561I 0.11 TCGA-VQ-AA6G-01 3 197430503 197430503 G A KIAA0226 Silent p.D162D 0.30 TCGA-VQ-AA6G-01 3 52312269 52312269 T A WDR82 Missense_Mutation p.I37F 0.32 deleterious(0) possibly_damaging(0.836) TCGA-VQ-AA6G-01 3 64672284 64672284 T G ADAMTS9 Missense_Mutation p.N159T 0.41 tolerated(0.12) benign(0.001) TCGA-VQ-AA6G-01 3 68929911 68929911 C G FAM19A4 Missense_Mutation p.A34P 0.07 tolerated(0.1) possibly_damaging(0.572) TCGA-VQ-AA6G-01 3 97596564 97596564 C - CRYBG3 Frame_Shift_Del p.P228Qfs*23 0.14 TCGA-VQ-AA6G-01 4 134073129 134073129 G A PCDH10 Missense_Mutation p.E612K 0.28 deleterious(0.04) possibly_damaging(0.574) TCGA-VQ-AA6G-01 4 153897565 153897567 CCT - FHDC1 In_Frame_Del p.S1044del 0.23 TCGA-VQ-AA6G-01 4 154702526 154702526 C T SFRP2 3'UTR 0.75 TCGA-VQ-AA6G-01 4 155155850 155155850 A C DCHS2 Silent p.G2863G 0.05 TCGA-VQ-AA6G-01 4 166226804 166226804 T C KLHL2 Silent p.S326S 0.25 TCGA-VQ-AA6G-01 4 42964973 42964973 G A GRXCR1 Missense_Mutation p.R150Q 0.23 deleterious(0.02) probably_damaging(0.998) TCGA-VQ-AA6G-01 4 81504244 81504244 C T C4orf22 Intron 0.24 TCGA-VQ-AA6G-01 4 88533736 88533736 C T DSPP Missense_Mutation p.A133V 0.17 benign(0.187) TCGA-VQ-AA6G-01 4 96762224 96762224 T G PDHA2 Missense_Mutation p.V308G 0.30 deleterious(0) probably_damaging(0.937) TCGA-VQ-AA6G-01 5 101815969 101815969 A C SLCO6A1 Silent p.A176A 0.20 TCGA-VQ-AA6G-01 5 11098707 11098707 A G CTNND2 Silent p.L873L 0.16 TCGA-VQ-AA6G-01 5 137519793 137519793 C T KIF20A Missense_Mutation p.R451W 0.25 deleterious(0) probably_damaging(0.958) TCGA-VQ-AA6G-01 5 140182627 140182627 C T PCDHA3 Silent p.T615T 0.26 TCGA-VQ-AA6G-01 5 140215544 140215544 G A PCDHA7 Missense_Mutation p.E526K 0.23 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-VQ-AA6G-01 5 156738736 156738736 C T CYFIP2 Missense_Mutation p.R327W 0.30 deleterious(0) probably_damaging(0.995) TCGA-VQ-AA6G-01 5 71756582 71756582 C T ZNF366 Missense_Mutation p.G248S 0.25 deleterious(0.03) probably_damaging(0.97) TCGA-VQ-AA6G-01 6 117121765 117121766 - T GPRC6A Frame_Shift_Ins p.N510Kfs*2 0.25 TCGA-VQ-AA6G-01 6 136599315 136599315 G A BCLAF1 Missense_Mutation p.P235L 0.11 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-VQ-AA6G-01 6 1390809 1390809 C T FOXF2 Silent p.R209R 0.33 TCGA-VQ-AA6G-01 6 26205246 26205246 C T HIST1H4E 3'UTR 0.57 TCGA-VQ-AA6G-01 6 29693082 29693082 G A HLA-F Nonsense_Mutation p.W295* 0.18 TCGA-VQ-AA6G-01 6 38702362 38702362 C T DNAH8 Silent p.C24C 0.50 TCGA-VQ-AA6G-01 6 39693173 39693173 C T KIF6 5'UTR 0.04 TCGA-VQ-AA6G-01 6 46826770 46826770 C A GPR116 Missense_Mutation p.W957L 0.15 deleterious(0) probably_damaging(1) TCGA-VQ-AA6G-01 6 47749802 47749802 A G OPN5 5'UTR 0.58 TCGA-VQ-AA6G-01 6 52622671 52622671 T A GSTA2 Silent p.A25A 0.60 TCGA-VQ-AA6G-01 6 87725488 87725488 G A HTR1E Missense_Mutation p.V146I 0.26 deleterious(0.03) probably_damaging(0.958) TCGA-VQ-AA6G-01 6 99283591 99283591 G A POU3F2 Missense_Mutation p.R281Q 0.23 deleterious(0) probably_damaging(0.999) TCGA-VQ-AA6G-01 6 99374606 99374606 T G FBXL4 Missense_Mutation p.S87R 0.36 tolerated(0.09) possibly_damaging(0.632) TCGA-VQ-AA6G-01 7 147964124 147964124 G T CNTNAP2 Splice_Site p.X1128_splice 0.20 TCGA-VQ-AA6G-01 8 133919008 133919008 C A TG Missense_Mutation p.P1237H 0.23 deleterious(0.03) possibly_damaging(0.546) TCGA-VQ-AA6G-01 8 144732057 144732057 T C ZNF623 Silent p.S5S 0.13 TCGA-VQ-AA6G-01 8 19805707 19805707 C T LPL Silent p.I35I 0.36 TCGA-VQ-AA6G-01 8 22426702 22426702 G A SORBS3 Silent p.P449P 0.10 TCGA-VQ-AA6G-01 8 26722559 26722559 G A ADRA1A 5'UTR 0.29 TCGA-VQ-AA6G-01 8 57025635 57025635 C T MOS Missense_Mutation p.V303I 0.10 tolerated(0.1) benign(0.384) TCGA-VQ-AA6G-01 8 67405821 67405821 G A C8orf46 5'UTR 0.28 TCGA-VQ-AA6G-01 9 107367575 107367575 A G OR13C2 Missense_Mutation p.C112R 0.09 deleterious(0.01) probably_damaging(0.998) TCGA-VQ-AA6G-01 9 125563219 125563219 G A OR1K1 Missense_Mutation p.R273H 0.21 tolerated(0.58) benign(0.005) TCGA-VQ-AA6G-01 9 125563288 125563288 G A OR1K1 Missense_Mutation p.R296H 0.27 tolerated(0.07) benign(0.001) TCGA-VQ-AA6G-01 9 127998762 127998762 C A HSPA5 3'UTR 0.60 TCGA-VQ-AA6G-01 9 139357394 139357394 G A SEC16A Missense_Mutation p.S1613L 0.27 tolerated(0.09) benign(0.145) TCGA-VQ-AA6G-01 9 40774526 40774526 T C ZNF658 Missense_Mutation p.K250R 0.34 tolerated(0.13) benign(0.156) TCGA-VQ-AA6G-01 9 73424974 73424974 C T TRPM3 Intron 0.24 TCGA-VQ-AA6G-01 9 79933278 79933278 T A VPS13A Nonsense_Mutation p.L1695* 0.28 TCGA-VQ-AA6G-01 9 86518672 86518672 G A KIF27 Missense_Mutation p.T254M 0.30 deleterious(0) probably_damaging(1) TCGA-VQ-AA6G-01 9 99691265 99691265 G A NUTM2G 5'Flank 0.21 TCGA-VQ-AA6I-01 10 100481499 100481499 G T HPSE2 Missense_Mutation p.Q291K 0.25 tolerated(0.35) probably_damaging(0.994) TCGA-VQ-AA6I-01 10 129913474 129913474 G A MKI67 Nonsense_Mutation p.R400* 0.22 TCGA-VQ-AA6I-01 10 135025189 135025189 C - KNDC1 Frame_Shift_Del p.L1356Wfs*109 0.29 TCGA-VQ-AA6I-01 10 85991841 85991841 C T LRIT1 Missense_Mutation p.V572I 0.21 tolerated(0.17) benign(0.052) TCGA-VQ-AA6I-01 10 98292920 98292921 - A TM9SF3 Frame_Shift_Ins p.V405Cfs*60 0.23 TCGA-VQ-AA6I-01 11 101342970 101342970 T G TRPC6 Missense_Mutation p.E701D 0.19 deleterious(0) probably_damaging(0.996) TCGA-VQ-AA6I-01 11 118352737 118352737 G A KMT2A Silent p.P1314P 0.20 TCGA-VQ-AA6I-01 11 18427050 18427051 TG - LDHA Frame_Shift_Del p.V285Sfs*12 0.19 TCGA-VQ-AA6I-01 11 3111809 3111809 G T OSBPL5 Missense_Mutation p.Q793K 0.20 tolerated(0.58) benign(0.012) TCGA-VQ-AA6I-01 11 5373582 5373582 C T OR51B6 Missense_Mutation p.P282L 0.14 deleterious(0.01) possibly_damaging(0.905) TCGA-VQ-AA6I-01 11 55340006 55340006 A C OR4C16 Missense_Mutation p.S135R 0.18 tolerated(0.34) benign(0.342) TCGA-VQ-AA6I-01 11 558078 558078 T C C11orf35 Intron 0.23 TCGA-VQ-AA6I-01 11 60292797 60292797 G T MS4A13 Missense_Mutation p.A102S 0.37 deleterious(0.01) probably_damaging(0.997) TCGA-VQ-AA6I-01 11 6291461 6291461 G A CCKBR Missense_Mutation p.G183R 0.31 tolerated(0.06) possibly_damaging(0.451) TCGA-VQ-AA6I-01 11 68201222 68201222 G A LRP5 Missense_Mutation p.A1306T 0.18 tolerated(0.57) benign(0.016) TCGA-VQ-AA6I-01 11 70282363 70282363 G A CTTN Intron 0.23 TCGA-VQ-AA6I-01 11 7324553 7324553 G C SYT9 Silent p.G143G 0.21 TCGA-VQ-AA6I-01 11 7725334 7725334 T C OVCH2 Silent p.V67V 0.22 TCGA-VQ-AA6I-01 11 802228 802228 C T PIDD Silent p.L381L 0.35 TCGA-VQ-AA6I-01 12 116457089 116457089 C A MED13L Missense_Mutation p.D317Y 0.47 deleterious(0) unknown(0) TCGA-VQ-AA6I-01 12 40699585 40699585 A C LRRK2 Splice_Site p.X1260_splice 0.45 TCGA-VQ-AA6I-01 12 50045070 50045070 G A FMNL3 Nonsense_Mutation p.R560* 0.43 TCGA-VQ-AA6I-01 12 8388252 8388252 C T RP11-266K4.9 RNA 0.73 TCGA-VQ-AA6I-01 12 9345298 9345298 G T PZP Nonsense_Mutation p.S431* 0.47 TCGA-VQ-AA6I-01 13 24411894 24411894 T C MIPEP Missense_Mutation p.D447G 0.22 deleterious(0) probably_damaging(0.967) TCGA-VQ-AA6I-01 13 25744090 25744091 AT - AMER2 Frame_Shift_Del p.Y556* 0.14 TCGA-VQ-AA6I-01 13 51417425 51417425 C T DLEU7 Missense_Mutation p.A120T 0.27 tolerated(0.19) benign(0.252) TCGA-VQ-AA6I-01 14 47389232 47389232 G A MDGA2 Missense_Mutation p.R741W 0.20 tolerated(0.23) possibly_damaging(0.736) TCGA-VQ-AA6I-01 15 100340362 100340362 C T DNM1P46 RNA 0.25 TCGA-VQ-AA6I-01 15 25326248 25326248 T C SNORD116-12 3'Flank 0.62 TCGA-VQ-AA6I-01 15 43816012 43816013 - GTA MAP1A In_Frame_Ins p.A781delinsGT 0.43 TCGA-VQ-AA6I-01 15 89400524 89400524 C T ACAN Missense_Mutation p.P1570S 0.13 tolerated(0.05) benign(0.264) TCGA-VQ-AA6I-01 16 30485517 30485517 C T ITGAL Missense_Mutation p.A21V 0.29 tolerated(0.08) benign(0.003) TCGA-VQ-AA6I-01 16 3781862 3781862 C T CREBBP Missense_Mutation p.R1602H 0.16 unknown(0) TCGA-VQ-AA6I-01 16 47494837 47494837 C T ITFG1 Silent p.E40E 0.22 TCGA-VQ-AA6I-01 16 48117615 48117615 C T ABCC12 3'UTR 0.28 TCGA-VQ-AA6I-01 16 76569471 76569471 C T CNTNAP4 Silent p.L856L 0.26 TCGA-VQ-AA6I-01 17 33258013 33258013 C T CCT6B Missense_Mutation p.E469K 0.16 tolerated(0.1) benign(0.087) TCGA-VQ-AA6I-01 17 36233832 36233832 T A YWHAEP7 RNA 0.44 TCGA-VQ-AA6I-01 17 36912143 36912143 C T PSMB3 Missense_Mutation p.R66C 0.25 tolerated(0.06) benign(0.01) TCGA-VQ-AA6I-01 17 40872369 40872369 C T EZH1 Missense_Mutation p.D196N 0.27 tolerated(0.1) benign(0.328) TCGA-VQ-AA6I-01 17 41150739 41150739 G A RPL27 5'UTR 0.18 TCGA-VQ-AA6I-01 17 59667899 59667899 C T NACA2 Missense_Mutation p.V215M 0.06 tolerated(1) benign(0) TCGA-VQ-AA6I-01 17 59667948 59667948 A G NACA2 Silent p.A198A 0.08 TCGA-VQ-AA6I-01 17 59668318 59668318 C T NACA2 Missense_Mutation p.R75K 0.10 tolerated(1) benign(0.001) TCGA-VQ-AA6I-01 17 59668562 59668562 G C NACA2 5'UTR 0.07 TCGA-VQ-AA6I-01 17 60755974 60755974 A G MRC2 Missense_Mutation p.H721R 0.25 tolerated(0.21) benign(0.14) TCGA-VQ-AA6I-01 17 74006588 74006588 C T EVPL Missense_Mutation p.A900T 0.21 tolerated(0.31) benign(0.01) TCGA-VQ-AA6I-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.43 deleterious(0) probably_damaging(0.997) TCGA-VQ-AA6I-01 17 7605044 7605047 CGGA - WRAP53 Frame_Shift_Del p.R298Lfs*33 0.24 TCGA-VQ-AA6I-01 18 32822843 32822843 C A ZNF397 Missense_Mutation p.Q137K 0.29 tolerated(0.18) benign(0.386) TCGA-VQ-AA6I-01 19 2226927 2226927 G A DOT1L Silent p.P1469P 0.47 TCGA-VQ-AA6I-01 19 44223140 44223140 C T IRGC Missense_Mutation p.R144C 0.53 deleterious(0.04) benign(0.081) TCGA-VQ-AA6I-01 19 45656074 45656074 G A NKPD1 Silent p.L541L 0.29 TCGA-VQ-AA6I-01 19 55221420 55221420 C G AC098784.2 3'Flank 0.21 TCGA-VQ-AA6I-01 19 55623852 55623852 G A PPP1R12C Missense_Mutation p.A185V 0.33 tolerated(0.05) benign(0.008) TCGA-VQ-AA6I-01 19 58232422 58232422 G A ZNF671 Silent p.S344S 0.20 TCGA-VQ-AA6I-01 19 9083304 9083304 C A MUC16 Silent p.L2837L 0.63 TCGA-VQ-AA6I-01 1 103380319 103380319 C A COL11A1 Missense_Mutation p.A1289S 0.33 unknown(0) TCGA-VQ-AA6I-01 1 113657114 113657114 C G LRIG2 Missense_Mutation p.Q716E 0.44 tolerated(0.24) benign(0.028) TCGA-VQ-AA6I-01 1 156220712 156220712 G A SMG5 Silent p.G968G 0.29 TCGA-VQ-AA6I-01 1 156914897 156914898 TC - ARHGEF11 Frame_Shift_Del p.N969Pfs*40 0.29 TCGA-VQ-AA6I-01 1 159021501 159021501 A C IFI16 Missense_Mutation p.E510D 0.11 tolerated(0.14) benign(0.242) TCGA-VQ-AA6I-01 1 215901379 215901379 G T USH2A Missense_Mutation p.T4020K 0.43 probably_damaging(0.998) TCGA-VQ-AA6I-01 1 229685137 229685137 C T ABCB10 Missense_Mutation p.A188T 0.30 deleterious(0.04) possibly_damaging(0.867) TCGA-VQ-AA6I-01 1 33998789 33998789 G A CSMD2 Silent p.N3200N 0.41 TCGA-VQ-AA6I-01 20 11898962 11898964 CTT - BTBD3 In_Frame_Del p.F15del 0.35 TCGA-VQ-AA6I-01 20 39991417 39991417 G T EMILIN3 Silent p.T264T 0.36 TCGA-VQ-AA6I-01 20 61430981 61430981 C T MRGBP Missense_Mutation p.R201W 0.16 deleterious(0) probably_damaging(0.985) TCGA-VQ-AA6I-01 21 33671242 33671242 G A MRAP Intron 0.27 TCGA-VQ-AA6I-01 21 44188344 44188344 G A PDE9A Missense_Mutation p.R468H 0.38 deleterious(0) probably_damaging(1) TCGA-VQ-AA6I-01 22 32802661 32802661 C G RTCB Missense_Mutation p.V110L 0.04 deleterious(0) benign(0.177) TCGA-VQ-AA6I-01 2 128051230 128051230 C T ERCC3 Silent p.G31G 0.11 TCGA-VQ-AA6I-01 2 129025965 129025965 C T HS6ST1 Missense_Mutation p.R336H 0.38 deleterious(0.04) benign(0.019) TCGA-VQ-AA6I-01 2 141739804 141739804 G A LRP1B Missense_Mutation p.R938C 0.31 probably_damaging(0.99) TCGA-VQ-AA6I-01 2 148602753 148602753 T A ACVR2A Missense_Mutation p.V11D 0.21 deleterious(0.02) benign(0.001) TCGA-VQ-AA6I-01 2 164466057 164466057 A C FIGN 3'UTR 0.30 TCGA-VQ-AA6I-01 2 179343268 179343268 G A FKBP7 5'UTR 0.16 TCGA-VQ-AA6I-01 2 179574385 179574385 C A TTN Missense_Mutation p.R9554M 0.36 TCGA-VQ-AA6I-01 2 197639839 197639839 C G GTF3C3 Splice_Site p.X611_splice 0.26 TCGA-VQ-AA6I-01 2 224828559 224828559 G - MRPL44 Frame_Shift_Del p.K246Rfs*35 0.22 TCGA-VQ-AA6I-01 2 27317348 27317348 T C KHK Silent p.F71F 0.31 TCGA-VQ-AA6I-01 2 58366853 58366853 G T VRK2 Missense_Mutation p.K303N 0.09 deleterious(0.01) probably_damaging(0.962) TCGA-VQ-AA6I-01 2 9663399 9663399 G C ADAM17 Silent p.G274G 0.13 TCGA-VQ-AA6I-01 3 1415615 1415615 A T CNTN6 Missense_Mutation p.E651D 0.14 tolerated(0.34) probably_damaging(0.999) TCGA-VQ-AA6I-01 3 170011281 170011281 G T PRKCI Missense_Mutation p.D468Y 0.13 deleterious(0) probably_damaging(0.969) TCGA-VQ-AA6I-01 3 21706482 21706482 G T ZNF385D Missense_Mutation p.R21S 0.17 tolerated(0.28) benign(0.046) TCGA-VQ-AA6I-01 3 38012952 38012952 C T CTDSPL Missense_Mutation p.L161F 0.13 deleterious(0.01) possibly_damaging(0.488) TCGA-VQ-AA6I-01 3 42798565 42798565 G A CCDC13 Silent p.A121A 0.26 TCGA-VQ-AA6I-01 3 89456459 89456459 C T EPHA3 Silent p.I545I 0.21 TCGA-VQ-AA6I-01 4 103184242 103184242 G C SLC39A8 Missense_Mutation p.L448V 0.15 tolerated(0.17) probably_damaging(0.999) TCGA-VQ-AA6I-01 4 80246785 80246785 G A NAA11 Missense_Mutation p.R83C 0.22 deleterious(0.03) benign(0.348) TCGA-VQ-AA6I-01 5 140181070 140181070 C T PCDHA3 Silent p.C96C 0.18 TCGA-VQ-AA6I-01 5 169474564 169474564 A G DOCK2 Silent p.K1339K 0.36 TCGA-VQ-AA6I-01 5 41058242 41058242 G A MROH2B Missense_Mutation p.R227C 0.24 tolerated(0.17) benign(0) TCGA-VQ-AA6I-01 6 10697691 10697691 T G PAK1IP1 Missense_Mutation p.I73M 0.22 deleterious(0.02) benign(0.438) TCGA-VQ-AA6I-01 6 111213629 111213629 G C AMD1 Missense_Mutation p.A200P 0.18 deleterious(0.01) probably_damaging(0.986) TCGA-VQ-AA6I-01 6 133789787 133789787 G A EYA4 Silent p.S296S 0.23 TCGA-VQ-AA6I-01 6 149721844 149721844 C T SUMO4 3'UTR 0.24 TCGA-VQ-AA6I-01 6 24718765 24718765 T A C6orf62 Intron 0.22 TCGA-VQ-AA6I-01 6 26444340 26444340 G C BTN3A3 Missense_Mutation p.D81H 0.21 tolerated(0.24) benign(0.006) TCGA-VQ-AA6I-01 6 27841205 27841205 C G HIST1H4L Missense_Mutation p.Q28H 0.12 deleterious(0.04) benign(0.132) TCGA-VQ-AA6I-01 6 31625904 31625904 G C APOM 3'UTR 0.23 TCGA-VQ-AA6I-01 6 55147110 55147110 G A HCRTR2 Missense_Mutation p.R398Q 0.14 tolerated(0.06) benign(0.087) TCGA-VQ-AA6I-01 6 76024397 76024397 C T FILIP1 Missense_Mutation p.R384Q 0.22 deleterious(0.04) possibly_damaging(0.476) TCGA-VQ-AA6I-01 6 97063687 97063687 G A FHL5 3'UTR 0.37 TCGA-VQ-AA6I-01 7 100457596 100457596 C T SLC12A9 Missense_Mutation p.S356L 0.58 deleterious(0) probably_damaging(0.99) TCGA-VQ-AA6I-01 7 100686436 100686436 C T MUC17 Silent p.A3913A 0.13 TCGA-VQ-AA6I-01 7 134632475 134632475 G A CALD1 Silent p.E583E 0.53 TCGA-VQ-AA6I-01 7 143632834 143632834 C G OR2F2 Missense_Mutation p.T170S 0.30 deleterious(0.05) benign(0.004) TCGA-VQ-AA6I-01 7 143632835 143632835 T A OR2F2 Silent p.T170T 0.30 TCGA-VQ-AA6I-01 7 149468131 149468132 - AGT ZNF467 5'UTR 0.38 TCGA-VQ-AA6I-01 7 150878216 150878216 C T ASB10 Missense_Mutation p.G305D 0.45 deleterious(0) probably_damaging(0.979) TCGA-VQ-AA6I-01 7 3658797 3658797 C T SDK1 Silent p.A128A 0.31 TCGA-VQ-AA6I-01 7 37780483 37780483 A G GPR141 Missense_Mutation p.E163G 0.25 tolerated(0.12) benign(0.124) TCGA-VQ-AA6I-01 7 70255631 70255631 C T AUTS2 Silent p.H1143H 0.26 TCGA-VQ-AA6I-01 7 77885755 77885755 C A MAGI2 Missense_Mutation p.D518Y 0.14 deleterious(0) probably_damaging(0.971) TCGA-VQ-AA6I-01 7 82585440 82585440 C A PCLO Missense_Mutation p.R1610L 0.24 unknown(0) TCGA-VQ-AA6I-01 7 86539167 86539167 A C KIAA1324L Missense_Mutation p.L774V 0.41 tolerated(1) benign(0.104) TCGA-VQ-AA6I-01 8 10470341 10470341 G A RP1L1 Missense_Mutation p.R423W 0.90 benign(0.028) TCGA-VQ-AA6I-01 8 145008592 145008592 G A PLEC Missense_Mutation p.L492F 0.28 unknown(0) TCGA-VQ-AA6I-01 8 33247251 33247251 G C FUT10 Missense_Mutation p.H148D 0.41 deleterious(0) probably_damaging(1) TCGA-VQ-AA6I-01 8 442692 442692 A C TDRP Missense_Mutation p.W89G 0.36 deleterious(0) probably_damaging(0.998) TCGA-VQ-AA6I-01 8 65527756 65527756 G T CYP7B1 Missense_Mutation p.A295E 0.35 deleterious(0) probably_damaging(0.909) TCGA-VQ-AA6I-01 8 86360413 86360413 G A CA3 3'UTR 0.30 TCGA-VQ-AA6I-01 9 129458808 129458808 C T LMX1B 3'UTR 0.42 TCGA-VQ-AA6I-01 9 134021655 134021655 G A NUP214 Missense_Mutation p.V637M 0.40 benign(0.004) TCGA-VQ-AA6I-01 9 21971120 21971120 G A CDKN2A Nonsense_Mutation p.R80* 0.71 TCGA-VQ-AA6I-01 9 34370782 34370782 G A KIAA1161 3'UTR 0.44 TCGA-VQ-AA6I-01 9 35559269 35559269 G A RUSC2 Missense_Mutation p.D1130N 0.15 deleterious(0.01) probably_damaging(0.988) TCGA-VQ-AA6I-01 9 71628963 71628963 C T PRKACG Missense_Mutation p.V16M 0.18 tolerated(0.15) benign(0.077) TCGA-VQ-AA6I-01 9 77683990 77683990 G A NMRK1 Missense_Mutation p.P140S 0.33 deleterious(0.01) benign(0.323) TCGA-VQ-AA6I-01 X 119293306 119293306 C T RHOXF2 Silent p.R155R 0.37 TCGA-VQ-AA6I-01 X 130219900 130219900 G A ARHGAP36 Missense_Mutation p.R373H 0.70 deleterious(0) probably_damaging(0.999) TCGA-VQ-AA6I-01 X 134856848 134856848 G T CT45A1 3'UTR 0.05 TCGA-VQ-AA6I-01 X 49033350 49033350 G - PRICKLE3 Frame_Shift_Del p.P386Lfs*16 0.30 TCGA-VQ-AA6I-01 X 8138169 8138169 G A VCX2 Silent p.S108S 0.59 TCGA-VQ-AA6J-01 10 100017750 100017750 G A LOXL4 Missense_Mutation p.R365W 0.13 deleterious(0.04) possibly_damaging(0.893) TCGA-VQ-AA6J-01 10 106118261 106118261 A G CCDC147 Missense_Mutation p.K58E 0.15 deleterious(0) possibly_damaging(0.691) TCGA-VQ-AA6J-01 10 125447648 125447648 G T GPR26 Missense_Mutation p.S329I 0.20 tolerated(0.08) benign(0.008) TCGA-VQ-AA6J-01 10 29822072 29822072 C T SVIL Silent p.T408T 0.07 TCGA-VQ-AA6J-01 10 62552046 62552046 C T CDK1 Missense_Mutation p.S265L 0.15 tolerated(0.19) benign(0.004) TCGA-VQ-AA6J-01 10 67726481 67726481 C T CTNNA3 Silent p.Q763Q 0.33 TCGA-VQ-AA6J-01 10 79745894 79745894 C A POLR3A Silent p.G975G 0.06 TCGA-VQ-AA6J-01 10 84745023 84745023 A C NRG3 Missense_Mutation p.T585P 0.20 tolerated(0.07) benign(0.015) TCGA-VQ-AA6J-01 11 125280211 125280211 A G PKNOX2 Silent p.Q236Q 0.42 TCGA-VQ-AA6J-01 11 125831725 125831725 G A CDON Silent p.S1175S 0.27 TCGA-VQ-AA6J-01 11 33087510 33087510 G A TCP11L1 Silent p.E369E 0.12 TCGA-VQ-AA6J-01 11 45273975 45273975 C A SYT13 Silent p.A281A 0.21 TCGA-VQ-AA6J-01 11 4661450 4661450 C T OR51D1 Missense_Mutation p.R144C 0.26 deleterious(0) possibly_damaging(0.726) TCGA-VQ-AA6J-01 11 71727046 71727046 G A NUMA1 Silent p.A501A 0.16 TCGA-VQ-AA6J-01 11 89903286 89903286 G T NAALAD2 Silent p.V464V 0.20 TCGA-VQ-AA6J-01 12 113354463 113354463 C A OAS1 Silent p.L268L 0.17 TCGA-VQ-AA6J-01 12 21030859 21030859 A C SLCO1B3 Missense_Mutation p.N375T 0.16 deleterious(0.03) possibly_damaging(0.764) TCGA-VQ-AA6J-01 12 21030865 21030865 T G SLCO1B3 Missense_Mutation p.L377W 0.16 tolerated(0.1) benign(0.16) TCGA-VQ-AA6J-01 12 22040796 22040796 C T ABCC9 Silent p.S625S 0.18 TCGA-VQ-AA6J-01 12 39161531 39161531 A C CPNE8 Missense_Mutation p.L161V 0.13 tolerated(0.28) benign(0.243) TCGA-VQ-AA6J-01 12 49691311 49691311 G T PRPH Missense_Mutation p.D390Y 0.26 deleterious(0) possibly_damaging(0.661) TCGA-VQ-AA6J-01 12 63543832 63543832 G A AVPR1A Missense_Mutation p.A262V 0.11 tolerated(0.16) benign(0.426) TCGA-VQ-AA6J-01 12 6804633 6804633 G A PIANP Missense_Mutation p.P264S 0.22 tolerated_low_confidence(0.31) benign(0.003) TCGA-VQ-AA6J-01 12 85674059 85674059 A C ALX1 Missense_Mutation p.K7T 0.12 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-VQ-AA6J-01 12 8926380 8926380 A C RIMKLB Nonstop_Mutation p.*387Cext*4 0.17 TCGA-VQ-AA6J-01 12 99223075 99223075 A C ANKS1B Silent p.T981T 0.12 TCGA-VQ-AA6J-01 13 32729636 32729636 C T FRY Silent p.N496N 0.07 TCGA-VQ-AA6J-01 13 38320440 38320440 G T TRPC4 Missense_Mutation p.N177K 0.05 deleterious(0.02) possibly_damaging(0.759) TCGA-VQ-AA6J-01 13 45578522 45578522 C T GPALPP1 Silent p.Y57Y 0.20 TCGA-VQ-AA6J-01 13 67802015 67802015 A C PCDH9 Missense_Mutation p.S186R 0.09 deleterious(0.04) possibly_damaging(0.821) TCGA-VQ-AA6J-01 13 78493667 78493667 G A EDNRB Silent p.F28F 0.15 TCGA-VQ-AA6J-01 13 88328651 88328651 A C SLITRK5 Missense_Mutation p.Q336H 0.21 tolerated(0.06) benign(0.005) TCGA-VQ-AA6J-01 14 51561366 51561366 C T TRIM9 Missense_Mutation p.G98S 0.15 tolerated(0.17) possibly_damaging(0.556) TCGA-VQ-AA6J-01 14 94160686 94160686 A G UNC79 Silent p.V2354V 0.27 TCGA-VQ-AA6J-01 15 23335647 23335648 - A HERC2P2 RNA 0.08 TCGA-VQ-AA6J-01 15 24922991 24922991 T C NPAP1 Silent p.A659A 0.15 TCGA-VQ-AA6J-01 15 25446468 25446468 T G SNORD115-20 5'Flank 0.14 TCGA-VQ-AA6J-01 15 25926004 25926004 C T ATP10A Missense_Mutation p.A1211T 0.15 deleterious(0) benign(0.045) TCGA-VQ-AA6J-01 15 31320630 31320630 G C TRPM1 Silent p.P1083P 0.16 TCGA-VQ-AA6J-01 15 66729175 66729175 G T MAP2K1 Missense_Mutation p.G128V 0.13 deleterious(0) probably_damaging(0.999) TCGA-VQ-AA6J-01 15 81650491 81650491 T G TMC3 Missense_Mutation p.K248Q 0.13 tolerated(0.08) benign(0.213) TCGA-VQ-AA6J-01 15 86273856 86273856 A C AKAP13 Silent p.T2404T 0.13 TCGA-VQ-AA6J-01 15 91455876 91455876 G A MAN2A2 Silent p.L817L 0.22 TCGA-VQ-AA6J-01 16 419105 419105 A T MRPL28 Missense_Mutation p.I135N 0.21 deleterious(0) probably_damaging(0.996) TCGA-VQ-AA6J-01 16 61687413 61687413 T C CDH8 3'UTR 0.33 TCGA-VQ-AA6J-01 16 67236358 67236358 C T ELMO3 Silent p.H493H 0.10 TCGA-VQ-AA6J-01 16 71715795 71715795 C T PHLPP2 Missense_Mutation p.R250Q 0.13 tolerated(0.2) possibly_damaging(0.827) TCGA-VQ-AA6J-01 17 26604171 26604171 C T AC061975.8 5'Flank 0.19 TCGA-VQ-AA6J-01 17 34199387 34199387 C A CCL5 Missense_Mutation p.M90I 0.06 deleterious(0.01) benign(0.073) TCGA-VQ-AA6J-01 17 51901290 51901290 G T KIF2B Missense_Mutation p.C299F 0.10 deleterious(0) probably_damaging(1) TCGA-VQ-AA6J-01 17 56270453 56270453 A C EPX Missense_Mutation p.K44T 0.20 deleterious(0.03) probably_damaging(0.951) TCGA-VQ-AA6J-01 17 57089768 57089768 C T TRIM37 Missense_Mutation p.M872I 0.23 tolerated_low_confidence(0.33) benign(0) TCGA-VQ-AA6J-01 17 66913580 66913580 A T ABCA8 Missense_Mutation p.F647Y 0.11 deleterious(0.02) benign(0.049) TCGA-VQ-AA6J-01 17 79650891 79650891 T C ARL16 5'UTR 0.15 TCGA-VQ-AA6J-01 17 9497556 9497556 C G WDR16 Missense_Mutation p.P152A 0.18 deleterious(0.04) benign(0.188) TCGA-VQ-AA6J-01 18 2922094 2922094 G A LPIN2 Missense_Mutation p.R760W 0.25 deleterious(0) probably_damaging(0.999) TCGA-VQ-AA6J-01 18 34349381 34349381 G A FHOD3 Missense_Mutation p.R1410Q 0.06 deleterious(0) probably_damaging(0.999) TCGA-VQ-AA6J-01 18 56823020 56823020 G A SEC11C Missense_Mutation p.V150M 0.20 deleterious(0.04) benign(0.393) TCGA-VQ-AA6J-01 18 67508603 67508603 C A DOK6 Missense_Mutation p.S327Y 0.34 deleterious_low_confidence(0.03) possibly_damaging(0.608) TCGA-VQ-AA6J-01 19 10677834 10677834 C T CDKN2D Missense_Mutation p.R134H 0.10 tolerated(1) benign(0) TCGA-VQ-AA6J-01 19 2073358 2073358 A G MOB3A 3'UTR 0.11 TCGA-VQ-AA6J-01 19 21909856 21909856 T C ZNF100 Missense_Mutation p.K420E 0.16 deleterious(0.03) possibly_damaging(0.814) TCGA-VQ-AA6J-01 19 21991337 21991337 T G ZNF43 Missense_Mutation p.K501T 0.11 tolerated(0.05) probably_damaging(0.913) TCGA-VQ-AA6J-01 19 23927440 23927440 A G ZNF681 Silent p.H304H 0.09 TCGA-VQ-AA6J-01 19 48571112 48571112 C A PLA2G4C Missense_Mutation p.K356N 0.14 tolerated(0.34) benign(0.006) TCGA-VQ-AA6J-01 19 50549979 50549979 G T ZNF473 Missense_Mutation p.C760F 0.11 deleterious(0) possibly_damaging(0.9) TCGA-VQ-AA6J-01 19 51645732 51645732 G A SIGLEC7 Missense_Mutation p.V36M 0.11 deleterious(0.02) probably_damaging(1) TCGA-VQ-AA6J-01 19 55112358 55112358 G T LILRA1 3'UTR 0.12 TCGA-VQ-AA6J-01 19 55177884 55177884 T G LILRB4 Missense_Mutation p.F329V 0.16 deleterious(0.01) benign(0.002) TCGA-VQ-AA6J-01 19 55451369 55451369 C A NLRP7 Missense_Mutation p.W273L 0.12 tolerated(0.06) probably_damaging(0.966) TCGA-VQ-AA6J-01 19 57325136 57325136 T C PEG3 Silent p.Q1558Q 0.13 TCGA-VQ-AA6J-01 1 158435989 158435989 T G OR10K1 Missense_Mutation p.L213R 0.09 deleterious(0) probably_damaging(0.991) TCGA-VQ-AA6J-01 1 158724854 158724854 G T OR6K6 Silent p.L83L 0.10 TCGA-VQ-AA6J-01 1 164769036 164769036 T C PBX1 Missense_Mutation p.I204T 0.12 deleterious(0.03) probably_damaging(1) TCGA-VQ-AA6J-01 1 165183045 165183045 T G LMX1A Missense_Mutation p.S168R 0.05 deleterious(0) possibly_damaging(0.772) TCGA-VQ-AA6J-01 1 173725119 173725119 G T KLHL20 Missense_Mutation p.M303I 0.13 tolerated(0.13) probably_damaging(0.985) TCGA-VQ-AA6J-01 1 201029847 201029847 G A CACNA1S Missense_Mutation p.S1118F 0.04 deleterious(0) probably_damaging(0.929) TCGA-VQ-AA6J-01 1 213009406 213009406 C T C1orf227 Missense_Mutation p.R29H 0.07 tolerated(0.1) possibly_damaging(0.715) TCGA-VQ-AA6J-01 1 222753174 222753174 G A TAF1A Missense_Mutation p.P111L 0.17 deleterious(0) probably_damaging(0.967) TCGA-VQ-AA6J-01 1 228509435 228509435 G A OBSCN Missense_Mutation p.D5922N 0.17 probably_damaging(0.999) TCGA-VQ-AA6J-01 1 236205427 236205427 C A NID1 Missense_Mutation p.E306D 0.24 tolerated(0.2) benign(0.001) TCGA-VQ-AA6J-01 1 240555814 240555814 A C FMN2 Missense_Mutation p.K1621T 0.05 possibly_damaging(0.515) TCGA-VQ-AA6J-01 1 243349197 243349197 T G CEP170 Missense_Mutation p.T484P 0.23 tolerated(0.29) benign(0.001) TCGA-VQ-AA6J-01 1 244816645 244816645 C T DESI2 Silent p.N10N 0.13 TCGA-VQ-AA6J-01 1 27089462 27089463 - G ARID1A Splice_Site p.X807_splice 0.33 TCGA-VQ-AA6J-01 1 32267303 32267303 C - SPOCD1 Frame_Shift_Del p.E463Kfs*2 0.08 TCGA-VQ-AA6J-01 1 47283636 47283636 G A CYP4B1 Splice_Site p.X403_splice 0.08 TCGA-VQ-AA6J-01 1 53727860 53727860 C T LRP8 Silent p.L598L 0.12 TCGA-VQ-AA6J-01 1 75684996 75684996 T G SLC44A5 Missense_Mutation p.K404N 0.22 tolerated(0.12) probably_damaging(0.968) TCGA-VQ-AA6J-01 1 78958623 78958623 G A PTGFR Silent p.S65S 0.11 TCGA-VQ-AA6J-01 20 17339012 17339012 A T PCSK2 Missense_Mutation p.K108M 0.15 deleterious(0) probably_damaging(0.999) TCGA-VQ-AA6J-01 20 23066717 23066717 G A CD93 Missense_Mutation p.T38M 0.53 deleterious(0) probably_damaging(0.971) TCGA-VQ-AA6J-01 20 29628250 29628250 A C FRG1B Silent p.S84S 0.04 TCGA-VQ-AA6J-01 20 42744352 42744352 G A JPH2 Missense_Mutation p.R655W 0.07 deleterious(0.01) benign(0.249) TCGA-VQ-AA6J-01 20 62839650 62839650 G A MYT1 Silent p.S367S 0.06 TCGA-VQ-AA6J-01 21 15579186 15579186 T G LIPI Missense_Mutation p.Q20P 0.59 deleterious_low_confidence(0.01) benign(0.005) TCGA-VQ-AA6J-01 22 17280680 17280680 T C XKR3 Silent p.R190R 0.10 TCGA-VQ-AA6J-01 2 120658309 120658309 G A PTPN4 Missense_Mutation p.E231K 0.09 deleterious(0.03) probably_damaging(0.998) TCGA-VQ-AA6J-01 2 1271341 1271341 G T SNTG2 Missense_Mutation p.G428W 0.19 deleterious(0) probably_damaging(0.997) TCGA-VQ-AA6J-01 2 128046997 128046997 C T ERCC3 Missense_Mutation p.M246I 0.20 tolerated(0.18) benign(0.001) TCGA-VQ-AA6J-01 2 141079572 141079572 T G LRP1B Missense_Mutation p.K4200N 0.17 benign(0.403) TCGA-VQ-AA6J-01 2 1507761 1507761 G A TPO Missense_Mutation p.A810T 0.14 tolerated(0.12) benign(0.036) TCGA-VQ-AA6J-01 2 152319509 152319509 G A RIF1 Missense_Mutation p.D1159N 0.19 tolerated(0.25) benign(0.001) TCGA-VQ-AA6J-01 2 1652599 1652599 T G PXDN Missense_Mutation p.T985P 0.20 deleterious(0.05) probably_damaging(0.997) TCGA-VQ-AA6J-01 2 1670055 1670055 C T PXDN Missense_Mutation p.G408R 0.15 deleterious(0) probably_damaging(0.998) TCGA-VQ-AA6J-01 2 179456221 179456221 G A TTN Silent p.S20077S 0.06 TCGA-VQ-AA6J-01 2 179500965 179500965 A C TTN Missense_Mutation p.L13778R 0.19 TCGA-VQ-AA6J-01 2 192863885 192863885 C T TMEFF2 Missense_Mutation p.A196T 0.08 deleterious(0) probably_damaging(0.916) TCGA-VQ-AA6J-01 2 199011591 199011591 A C PLCL1 Missense_Mutation p.S1065R 0.21 tolerated(0.15) unknown(0) TCGA-VQ-AA6J-01 2 228883844 228883844 T A SPHKAP Nonsense_Mutation p.R576* 0.18 TCGA-VQ-AA6J-01 2 47709954 47709954 G A MSH2 Missense_Mutation p.V891M 0.10 deleterious(0.03) possibly_damaging(0.548) TCGA-VQ-AA6J-01 2 49247288 49247288 T G FSHR Missense_Mutation p.Q79P 0.20 tolerated(0.09) possibly_damaging(0.882) TCGA-VQ-AA6J-01 2 69093604 69093604 A C BMP10 Missense_Mutation p.L145R 0.13 deleterious(0) probably_damaging(1) TCGA-VQ-AA6J-01 2 80097053 80097053 A C CTNNA2 Silent p.R193R 0.15 TCGA-VQ-AA6J-01 3 119886800 119886800 G A GPR156 Silent p.N508N 0.21 TCGA-VQ-AA6J-01 3 124103831 124103831 A C KALRN Missense_Mutation p.Q635P 0.11 deleterious(0) unknown(0) TCGA-VQ-AA6J-01 3 130284042 130284042 A C COL6A6 Missense_Mutation p.K289T 0.11 deleterious(0.03) possibly_damaging(0.903) TCGA-VQ-AA6J-01 3 130799314 130799314 C G NEK11 Missense_Mutation p.T73S 0.19 deleterious(0.04) probably_damaging(0.913) TCGA-VQ-AA6J-01 3 132071579 132071579 A G ACPP Missense_Mutation p.S294G 0.11 tolerated(0.62) benign(0.006) TCGA-VQ-AA6J-01 3 133664091 133664091 T - SLCO2A1 Frame_Shift_Del p.I437Yfs*43 0.16 TCGA-VQ-AA6J-01 3 134670540 134670540 T G EPHB1 Missense_Mutation p.F151V 0.22 tolerated(0.25) benign(0.038) TCGA-VQ-AA6J-01 3 134920320 134920320 A T EPHB1 Missense_Mutation p.N712I 0.18 deleterious(0) probably_damaging(0.976) TCGA-VQ-AA6J-01 3 134967276 134967276 C T EPHB1 Missense_Mutation p.A872V 0.19 deleterious(0.05) benign(0.23) TCGA-VQ-AA6J-01 3 165491078 165491078 T G BCHE 3'UTR 0.26 TCGA-VQ-AA6J-01 3 28379513 28379513 A T AZI2 Silent p.S118S 0.09 TCGA-VQ-AA6J-01 3 36872533 36872533 C T TRANK1 Silent p.P2803P 0.10 TCGA-VQ-AA6J-01 3 97868965 97868965 T G OR5H14 Missense_Mutation p.L246V 0.16 deleterious(0.03) benign(0.175) TCGA-VQ-AA6J-01 4 16760876 16760876 T C LDB2 Missense_Mutation p.D47G 0.15 deleterious(0) probably_damaging(0.996) TCGA-VQ-AA6J-01 4 26407803 26407803 T G RBPJ Silent p.A35A 0.22 TCGA-VQ-AA6J-01 4 46099349 46099349 T C GABRG1 Missense_Mutation p.D41G 0.26 tolerated(0.25) benign(0.321) TCGA-VQ-AA6J-01 4 5642362 5642362 T A EVC2 Missense_Mutation p.K450M 0.31 deleterious(0) probably_damaging(0.983) TCGA-VQ-AA6J-01 4 672815 672815 C A MYL5 Silent p.A60A 0.06 TCGA-VQ-AA6J-01 4 7728571 7728571 C T SORCS2 Missense_Mutation p.T937M 0.35 deleterious(0) probably_damaging(0.932) TCGA-VQ-AA6J-01 5 112920041 112920041 G C YTHDC2 Missense_Mutation p.Q1230H 0.20 tolerated(0.06) benign(0.087) TCGA-VQ-AA6J-01 5 11384863 11384863 C T CTNND2 Missense_Mutation p.R364H 0.10 deleterious(0) probably_damaging(0.997) TCGA-VQ-AA6J-01 5 127420226 127420226 G - SLC12A2 Frame_Shift_Del p.H195Tfs*89 0.18 TCGA-VQ-AA6J-01 5 13708285 13708285 G A DNAH5 Nonsense_Mutation p.R4429* 0.35 TCGA-VQ-AA6J-01 5 140553614 140553614 T G PCDHB7 Missense_Mutation p.F400V 0.32 deleterious_low_confidence(0.01) benign(0.113) TCGA-VQ-AA6J-01 5 17275989 17275989 A C BASP1 Missense_Mutation p.T222P 0.16 deleterious(0.01) probably_damaging(0.943) TCGA-VQ-AA6J-01 5 21783471 21783471 T G CDH12 Missense_Mutation p.K463N 0.14 deleterious(0) benign(0.112) TCGA-VQ-AA6J-01 5 38484945 38484945 G A LIFR Silent p.L841L 0.14 TCGA-VQ-AA6J-01 5 41203219 41203219 A C C6 Silent p.T38T 0.18 TCGA-VQ-AA6J-01 5 70308604 70308604 C A NAIP Missense_Mutation p.A47S 0.29 tolerated(0.59) benign(0.101) TCGA-VQ-AA6J-01 6 146755148 146755148 C A GRM1 Missense_Mutation p.T934N 0.17 deleterious_low_confidence(0.02) benign(0.269) TCGA-VQ-AA6J-01 6 153073354 153073354 T C VIP Silent p.T14T 0.20 TCGA-VQ-AA6J-01 6 154412400 154412400 T C OPRM1 Silent p.S412S 0.16 TCGA-VQ-AA6J-01 6 25479373 25479373 C A LRRC16A Intron 0.08 TCGA-VQ-AA6J-01 6 25557013 25557013 C T LRRC16A Missense_Mutation p.R893C 0.09 deleterious(0) possibly_damaging(0.556) TCGA-VQ-AA6J-01 6 26027225 26027225 C T HIST1H4B Missense_Mutation p.D86N 0.20 deleterious(0) probably_damaging(0.933) TCGA-VQ-AA6J-01 6 26638750 26638750 C A ZNF322 Missense_Mutation p.R11I 0.11 tolerated(0.05) probably_damaging(0.962) TCGA-VQ-AA6J-01 6 32810759 32810759 A G PSMB8 Silent p.I85I 0.14 TCGA-VQ-AA6J-01 6 5771527 5771527 G A FARS2 Silent p.T407T 0.11 TCGA-VQ-AA6J-01 6 72086669 72086669 A T MIR30C2 RNA 0.09 TCGA-VQ-AA6J-01 6 73951870 73951870 C T KHDC1 Missense_Mutation p.R141H 0.10 tolerated(0.07) probably_damaging(0.976) TCGA-VQ-AA6J-01 6 79656509 79656509 C T PHIP Missense_Mutation p.R1430H 0.14 deleterious(0) probably_damaging(0.941) TCGA-VQ-AA6J-01 7 21640495 21640495 G A DNAH11 Missense_Mutation p.A1068T 0.15 benign(0.025) TCGA-VQ-AA6J-01 7 38725478 38725478 C T FAM183B Missense_Mutation p.R43H 0.06 tolerated(0.28) benign(0.016) TCGA-VQ-AA6J-01 7 6193912 6193912 C T USP42 Silent p.A909A 0.27 TCGA-VQ-AA6J-01 7 66760684 66760684 C T Y_RNA 3'Flank 0.08 TCGA-VQ-AA6J-01 7 71275467 71275467 T C CALN1 Missense_Mutation p.Q171R 0.06 deleterious(0.01) probably_damaging(0.969) TCGA-VQ-AA6J-01 8 105405091 105405091 A T DPYS Missense_Mutation p.V455D 0.15 deleterious(0) possibly_damaging(0.758) TCGA-VQ-AA6J-01 8 110980514 110980514 A C KCNV1 Missense_Mutation p.F436V 0.20 tolerated(0.09) benign(0.039) TCGA-VQ-AA6J-01 8 113243805 113243805 T G CSMD3 Missense_Mutation p.K3599N 0.11 deleterious(0.01) benign(0.368) TCGA-VQ-AA6J-01 8 118174031 118174031 A C SLC30A8 Missense_Mutation p.Q209H 0.14 tolerated(0.15) probably_damaging(0.985) TCGA-VQ-AA6J-01 8 139255226 139255226 A G FAM135B Silent p.L210L 0.21 TCGA-VQ-AA6J-01 8 140630511 140630511 T G KCNK9 Missense_Mutation p.K372T 0.12 tolerated(0.05) benign(0.168) TCGA-VQ-AA6J-01 8 55533559 55533559 C A RP1 Silent p.I11I 0.12 TCGA-VQ-AA6J-01 8 62289187 62289187 G A CLVS1 Missense_Mutation p.R160H 0.06 deleterious(0.04) possibly_damaging(0.75) TCGA-VQ-AA6J-01 8 69445347 69445347 A C C8orf34 Missense_Mutation p.E356D 0.08 tolerated(0.25) benign(0.276) TCGA-VQ-AA6J-01 8 77616686 77616686 C G ZFHX4 Missense_Mutation p.D121E 0.05 possibly_damaging(0.621) TCGA-VQ-AA6J-01 8 91638086 91638086 A T TMEM64 Missense_Mutation p.I319N 0.09 deleterious(0) benign(0.098) TCGA-VQ-AA6J-01 9 119094708 119094708 G A PAPPA Missense_Mutation p.V1120M 0.11 deleterious(0) possibly_damaging(0.623) TCGA-VQ-AA6J-01 9 120475999 120475999 C A TLR4 Missense_Mutation p.N531K 0.15 tolerated(1) benign(0.019) TCGA-VQ-AA6J-01 9 123330652 123330652 A T CDK5RAP2 Missense_Mutation p.S48T 0.08 tolerated(0.14) benign(0.153) TCGA-VQ-AA6J-01 9 35061056 35061056 C T VCP Missense_Mutation p.A439T 0.18 tolerated(0.09) possibly_damaging(0.856) TCGA-VQ-AA6J-01 9 95618509 95618509 A G ZNF484 Missense_Mutation p.V38A 0.11 deleterious(0) probably_damaging(0.994) TCGA-VQ-AA6J-01 X 17818556 17818556 G - RAI2 Frame_Shift_Del p.P528Qfs*5 0.26 TCGA-VQ-AA6J-01 X 21444648 21444648 A C CNKSR2 Missense_Mutation p.N33T 0.29 tolerated(0.33) benign(0.003) TCGA-VQ-AA6J-01 X 591763 591763 C T SHOX Missense_Mutation p.A44V 0.08 tolerated_low_confidence(0.19) benign(0.23) TCGA-VQ-AA6J-01 X 73961847 73961847 C A KIAA2022 Nonsense_Mutation p.E849* 0.33 TCGA-VQ-AA6J-01 X 83141582 83141582 A C CYLC1 Missense_Mutation p.K649T 0.23 tolerated(0.09) possibly_damaging(0.806) TCGA-VQ-AA6J-01 X 92965163 92965163 T C FAM133A Nonstop_Mutation p.*249Qext*8 0.34 TCGA-VQ-AA6K-01 10 102739999 102739999 C T SEMA4G Missense_Mutation p.R417W 0.36 deleterious(0) possibly_damaging(0.821) TCGA-VQ-AA6K-01 10 118434728 118434728 C T HSPA12A Missense_Mutation p.R531H 0.19 deleterious(0) probably_damaging(0.977) TCGA-VQ-AA6K-01 10 44140161 44140161 C A ZNF32 Missense_Mutation p.E53D 0.08 tolerated_low_confidence(0.11) benign(0.089) TCGA-VQ-AA6K-01 10 61829081 61829082 - T ANK3 Frame_Shift_Ins p.T3853Nfs*8 0.09 TCGA-VQ-AA6K-01 11 108117793 108117793 G A ATM Missense_Mutation p.G335E 0.10 deleterious(0) probably_damaging(0.963) TCGA-VQ-AA6K-01 11 1298388 1298388 C T TOLLIP Missense_Mutation p.A236T 0.30 tolerated(0.31) benign(0.038) TCGA-VQ-AA6K-01 11 13398107 13398107 C T ARNTL Intron 0.35 TCGA-VQ-AA6K-01 11 5632621 5632621 A T TRIM6 3'UTR 0.09 TCGA-VQ-AA6K-01 11 64575481 64575481 T C MEN1 Missense_Mutation p.E184G 0.59 deleterious(0) probably_damaging(0.993) TCGA-VQ-AA6K-01 11 73829389 73829389 C G C2CD3 Missense_Mutation p.E468D 0.60 tolerated(1) benign(0.001) TCGA-VQ-AA6K-01 11 9047354 9047354 G A SCUBE2 Missense_Mutation p.R860C 0.06 deleterious(0) probably_damaging(0.999) TCGA-VQ-AA6K-01 12 25047302 25047302 C T BCAT1 Nonsense_Mutation p.W74* 0.26 TCGA-VQ-AA6K-01 12 333266 333266 C T SLC6A13 Silent p.A401A 0.31 TCGA-VQ-AA6K-01 12 70933610 70933610 G A PTPRB Missense_Mutation p.S1898F 0.06 deleterious(0.01) benign(0.244) TCGA-VQ-AA6K-01 13 33635386 33635386 G A KL Missense_Mutation p.G724R 0.33 deleterious(0) probably_damaging(1) TCGA-VQ-AA6K-01 13 42769087 42769087 C A DGKH Missense_Mutation p.P701H 0.12 tolerated(0.58) benign(0.289) TCGA-VQ-AA6K-01 14 38724545 38724545 G A CLEC14A Missense_Mutation p.A228V 0.04 tolerated(0.37) benign(0.007) TCGA-VQ-AA6K-01 14 44976299 44976299 T A FSCB 5'UTR 0.26 TCGA-VQ-AA6K-01 14 63735878 63735878 G A RHOJ Missense_Mutation p.A77T 0.10 deleterious(0.01) probably_damaging(0.978) TCGA-VQ-AA6K-01 14 73685873 73685873 T - PSEN1 Frame_Shift_Del p.F428Sfs*33 0.09 TCGA-VQ-AA6K-01 15 72499498 72499498 T C PKM Silent p.R319R 0.29 TCGA-VQ-AA6K-01 15 76995309 76995309 A T SCAPER Missense_Mutation p.I761N 0.34 deleterious(0) possibly_damaging(0.572) TCGA-VQ-AA6K-01 16 20482480 20482480 C A ACSM2A Missense_Mutation p.P228T 0.11 deleterious(0) probably_damaging(1) TCGA-VQ-AA6K-01 16 20975002 20975002 C T DNAH3 Missense_Mutation p.A3402T 0.32 deleterious(0.02) benign(0.052) TCGA-VQ-AA6K-01 16 2757384 2757384 A T KCTD5 3'UTR 0.35 TCGA-VQ-AA6K-01 16 2814349 2814349 G T SRRM2 Missense_Mutation p.V1274L 0.28 unknown(0) TCGA-VQ-AA6K-01 16 49525170 49525170 C A ZNF423 3'UTR 0.27 TCGA-VQ-AA6K-01 16 5140265 5140265 C T FAM86A Missense_Mutation p.D188N 0.08 deleterious(0.04) possibly_damaging(0.847) TCGA-VQ-AA6K-01 16 77327095 77327095 C T ADAMTS18 Missense_Mutation p.A1023T 0.06 tolerated(0.33) benign(0.005) TCGA-VQ-AA6K-01 17 10426816 10426816 G C MYH2 Silent p.A1823A 0.42 TCGA-VQ-AA6K-01 17 33331427 33331427 G A LIG3 Missense_Mutation p.V978M 0.31 deleterious(0.04) benign(0.136) TCGA-VQ-AA6K-01 17 72739444 72739444 G T RAB37 Missense_Mutation p.D116Y 0.38 deleterious(0) probably_damaging(0.972) TCGA-VQ-AA6K-01 18 44561142 44561142 G A TCEB3B Missense_Mutation p.S165F 0.41 tolerated(0.07) possibly_damaging(0.842) TCGA-VQ-AA6K-01 18 6264028 6264028 G A L3MBTL4 Missense_Mutation p.A46V 0.08 tolerated(0.37) benign(0) TCGA-VQ-AA6K-01 19 15905257 15905257 C T OR10H5 Silent p.N133N 0.25 TCGA-VQ-AA6K-01 19 22836759 22836759 G T ZNF492 Silent p.L24L 0.06 TCGA-VQ-AA6K-01 19 23926495 23926495 T G ZNF681 Missense_Mutation p.K619N 0.17 deleterious(0) benign(0.035) TCGA-VQ-AA6K-01 19 38924493 38924493 C T RYR1 Silent p.D8D 0.26 TCGA-VQ-AA6K-01 19 42558042 42558042 T C GRIK5 Missense_Mutation p.S366G 0.10 deleterious(0.03) possibly_damaging(0.889) TCGA-VQ-AA6K-01 19 50547993 50547993 T A ZNF473 Missense_Mutation p.I98N 0.35 deleterious(0) possibly_damaging(0.781) TCGA-VQ-AA6K-01 19 57176122 57176122 G T ZNF835 Missense_Mutation p.Q149K 0.30 deleterious(0.04) possibly_damaging(0.803) TCGA-VQ-AA6K-01 19 615920 615920 G T HCN2 Nonsense_Mutation p.E706* 0.50 TCGA-VQ-AA6K-01 1 152082623 152082624 - T TCHH Frame_Shift_Ins p.D1024Rfs*194 0.17 TCGA-VQ-AA6K-01 1 158908260 158908260 T A PYHIN1 Nonsense_Mutation p.Y113* 0.39 TCGA-VQ-AA6K-01 1 166905870 166905870 G A ILDR2 Missense_Mutation p.R221C 0.24 deleterious(0) probably_damaging(1) TCGA-VQ-AA6K-01 1 18808683 18808683 G A KLHDC7A Missense_Mutation p.R403Q 0.33 tolerated(0.55) benign(0.001) TCGA-VQ-AA6K-01 1 190067964 190067964 G A BRINP3 Silent p.L495L 0.05 TCGA-VQ-AA6K-01 1 221053613 221053613 T G HLX Silent p.P138P 0.21 TCGA-VQ-AA6K-01 1 85403687 85403687 G C MCOLN2 Missense_Mutation p.L397V 0.52 deleterious(0.04) probably_damaging(0.951) TCGA-VQ-AA6K-01 1 92200485 92200485 G T TGFBR3 Nonsense_Mutation p.S139* 0.41 TCGA-VQ-AA6K-01 20 17434530 17434530 C T PCSK2 Silent p.Y343Y 0.12 TCGA-VQ-AA6K-01 21 37642374 37642374 A G DOPEY2 Missense_Mutation p.S1851G 0.44 deleterious(0.03) possibly_damaging(0.86) TCGA-VQ-AA6K-01 22 22868668 22868668 G C ZNF280A Silent p.L429L 0.26 TCGA-VQ-AA6K-01 2 10928837 10928837 T C PDIA6 Silent p.K328K 0.57 TCGA-VQ-AA6K-01 2 179463986 179463986 G A TTN Missense_Mutation p.T18845M 0.22 TCGA-VQ-AA6K-01 2 187506261 187506261 C T ITGAV Missense_Mutation p.R369W 0.42 deleterious(0) probably_damaging(1) TCGA-VQ-AA6K-01 2 207345965 207345965 C A ADAM23 Missense_Mutation p.L148M 0.07 deleterious(0) probably_damaging(0.966) TCGA-VQ-AA6K-01 2 232026138 232026138 A G PSMD1 Missense_Mutation p.Q768R 0.04 deleterious(0) possibly_damaging(0.77) TCGA-VQ-AA6K-01 2 241817508 241817508 T G AGXT Missense_Mutation p.Y338D 0.11 deleterious(0.03) probably_damaging(0.933) TCGA-VQ-AA6K-01 2 77746703 77746703 T G LRRTM4 Missense_Mutation p.S98R 0.13 tolerated(0.2) benign(0.175) TCGA-VQ-AA6K-01 3 167000196 167000196 G T ZBBX Missense_Mutation p.P695H 0.06 tolerated(0.07) possibly_damaging(0.844) TCGA-VQ-AA6K-01 3 167319988 167319988 C T WDR49 Missense_Mutation p.G60D 0.17 deleterious(0.02) possibly_damaging(0.901) TCGA-VQ-AA6K-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.37 deleterious(0.04) probably_damaging(0.96) TCGA-VQ-AA6K-01 3 185237081 185237081 T A LIPH Missense_Mutation p.K245N 0.26 deleterious(0) probably_damaging(0.997) TCGA-VQ-AA6K-01 3 197505271 197505271 G T FYTTD1 Missense_Mutation p.S265I 0.24 deleterious(0.05) possibly_damaging(0.678) TCGA-VQ-AA6K-01 3 99568200 99568200 A T FILIP1L Missense_Mutation p.Y774N 0.08 tolerated(0.23) probably_damaging(0.995) TCGA-VQ-AA6K-01 4 23833224 23833224 G A PPARGC1A Missense_Mutation p.P129S 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-VQ-AA6K-01 4 3149763 3149763 G A HTT Nonsense_Mutation p.W1109* 0.16 TCGA-VQ-AA6K-01 4 39903981 39903981 A T PDS5A Missense_Mutation p.D495E 0.17 deleterious(0) probably_damaging(1) TCGA-VQ-AA6K-01 5 101834626 101834626 C A SLCO6A1 5'UTR 0.09 TCGA-VQ-AA6K-01 5 134782138 134782138 G A C5orf20 Missense_Mutation p.R221W 0.26 tolerated_low_confidence(0.18) benign(0.082) TCGA-VQ-AA6K-01 5 140593923 140593923 G T PCDHB13 Missense_Mutation p.L76F 0.23 tolerated_low_confidence(0.15) benign(0.043) TCGA-VQ-AA6K-01 5 140740407 140740407 C T PCDHGB2 Silent p.A235A 0.31 TCGA-VQ-AA6K-01 5 140744090 140744090 C T PCDHGA5 Missense_Mutation p.R65C 0.11 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-VQ-AA6K-01 5 146997615 146997615 A - JAKMIP2 Frame_Shift_Del p.F735Lfs*5 0.24 TCGA-VQ-AA6K-01 5 153406811 153406811 C A FAM114A2 Silent p.G238G 0.13 TCGA-VQ-AA6K-01 5 59064251 59064251 G A PDE4D Intron 0.11 TCGA-VQ-AA6K-01 5 79355604 79355604 G A THBS4 Missense_Mutation p.R288H 0.24 tolerated(0.14) benign(0.004) TCGA-VQ-AA6K-01 5 79741163 79741163 T C ZFYVE16 Missense_Mutation p.L888S 0.38 deleterious(0) probably_damaging(0.999) TCGA-VQ-AA6K-01 6 111665191 111665191 C T REV3L Missense_Mutation p.R2492H 0.13 deleterious(0) probably_damaging(0.999) TCGA-VQ-AA6K-01 6 132029870 132029870 G A CTAGE9 Missense_Mutation p.P763L 0.30 tolerated(0.33) possibly_damaging(0.462) TCGA-VQ-AA6K-01 6 146350923 146350923 C T GRM1 Silent p.N90N 0.46 TCGA-VQ-AA6K-01 6 149983275 149983275 G C LATS1 Missense_Mutation p.R995G 0.09 deleterious(0) probably_damaging(1) TCGA-VQ-AA6K-01 6 76640786 76640786 C T IMPG1 Silent p.E709E 0.17 TCGA-VQ-AA6K-01 6 90642087 90642087 G A BACH2 3'UTR 0.14 TCGA-VQ-AA6K-01 7 126746638 126746638 C A GRM8 Silent p.L213L 0.33 TCGA-VQ-AA6K-01 7 151859348 151859348 A T KMT2C Missense_Mutation p.S3772T 0.29 benign(0.003) TCGA-VQ-AA6K-01 7 2406001 2406001 G A EIF3B Missense_Mutation p.A403T 0.20 tolerated(0.09) probably_damaging(0.922) TCGA-VQ-AA6K-01 7 42012081 42012081 G T GLI3 Missense_Mutation p.P653Q 0.06 tolerated(0.06) probably_damaging(1) TCGA-VQ-AA6K-01 7 43594343 43594343 C T HECW1 Missense_Mutation p.R1555W 0.26 deleterious(0) probably_damaging(0.993) TCGA-VQ-AA6K-01 7 81381528 81381528 C T HGF Missense_Mutation p.R178Q 0.06 deleterious(0) probably_damaging(1) TCGA-VQ-AA6K-01 7 88963527 88963528 - A ZNF804B Frame_Shift_Ins p.S413Ifs*4 0.17 TCGA-VQ-AA6K-01 8 69380971 69380971 C A C8orf34 Missense_Mutation p.P218T 0.33 tolerated(0.25) benign(0.329) TCGA-VQ-AA6K-01 8 79590866 79590866 G C ZC2HC1A Missense_Mutation p.Q54H 0.15 deleterious(0) probably_damaging(0.999) TCGA-VQ-AA6K-01 9 107589237 107589237 T C ABCA1 Missense_Mutation p.I777V 0.28 tolerated(1) benign(0.003) TCGA-VQ-AA6K-01 9 125330525 125330525 C T OR1L8 Missense_Mutation p.V78I 0.40 tolerated(0.65) benign(0.002) TCGA-VQ-AA6K-01 9 36351127 36351127 T - RNF38 Frame_Shift_Del p.V417* 0.20 TCGA-VQ-AA6K-01 X 31986468 31986468 T A DMD Missense_Mutation p.D2201V 0.51 benign(0.001) TCGA-ZA-A8F6-01 11 117306455 117306455 G A DSCAML1 Missense_Mutation p.T1654I 0.13 tolerated(0.09) benign(0.089) TCGA-ZA-A8F6-01 11 124440326 124440326 T G OR8A1 Missense_Mutation p.F121C 0.25 deleterious(0) probably_damaging(0.999) TCGA-ZA-A8F6-01 11 3047945 3047945 C G CARS Missense_Mutation p.E372Q 0.16 deleterious(0.05) probably_damaging(0.999) TCGA-ZA-A8F6-01 11 31327200 31327200 G A DCDC1 Missense_Mutation p.T239M 0.21 tolerated(0.23) benign(0.098) TCGA-ZA-A8F6-01 11 4511001 4511001 C G OR52K1 Missense_Mutation p.P291A 0.18 deleterious(0) probably_damaging(0.999) TCGA-ZA-A8F6-01 12 27143411 27143411 C T TM7SF3 Silent p.E280E 0.18 TCGA-ZA-A8F6-01 12 68050889 68050889 G A DYRK2 Missense_Mutation p.G68S 0.14 tolerated_low_confidence(0.17) benign(0.019) TCGA-ZA-A8F6-01 12 7526210 7526210 C A CD163L1 Nonsense_Mutation p.E1146* 0.16 TCGA-ZA-A8F6-01 14 89069296 89069296 G A ZC3H14 Missense_Mutation p.V547I 0.27 tolerated(0.33) benign(0.005) TCGA-ZA-A8F6-01 15 62212323 62212323 G A VPS13C Nonsense_Mutation p.Q2474* 0.19 TCGA-ZA-A8F6-01 15 82336140 82336140 G - MEX3B Frame_Shift_Del p.E358Sfs*169 0.17 TCGA-ZA-A8F6-01 16 10032264 10032264 C T GRIN2A Missense_Mutation p.V187I 0.15 tolerated(1) benign(0.003) TCGA-ZA-A8F6-01 16 68344740 68344740 G C SLC7A6OS Silent p.L30L 0.17 TCGA-ZA-A8F6-01 16 76389352 76389352 A G CNTNAP4 Missense_Mutation p.M87V 0.21 deleterious(0) probably_damaging(0.999) TCGA-ZA-A8F6-01 17 11837345 11837345 G C DNAH9 Missense_Mutation p.G4149A 0.17 probably_damaging(0.909) TCGA-ZA-A8F6-01 17 18155351 18155351 G A FLII Missense_Mutation p.A403V 0.20 tolerated(0.1) probably_damaging(0.98) TCGA-ZA-A8F6-01 17 73569677 73569677 C T LLGL2 Silent p.N947N 0.18 TCGA-ZA-A8F6-01 17 7578375 7578375 G A TP53 Silent p.S185S 0.18 TCGA-ZA-A8F6-01 19 19738137 19738137 A G LPAR2 Intron 0.06 TCGA-ZA-A8F6-01 19 38573722 38573722 A T SIPA1L3 Missense_Mutation p.D506V 0.28 deleterious(0.01) benign(0.005) TCGA-ZA-A8F6-01 19 5231577 5231577 C T PTPRS Silent p.T633T 0.14 TCGA-ZA-A8F6-01 1 104120458 104120458 A G AMY2B Missense_Mutation p.N446S 0.17 tolerated(0.1) probably_damaging(0.912) TCGA-ZA-A8F6-01 1 145562089 145562089 G A ANKRD35 Missense_Mutation p.G593R 0.14 tolerated(0.09) probably_damaging(0.979) TCGA-ZA-A8F6-01 1 151039754 151039754 C A MLLT11 Silent p.P18P 0.19 TCGA-ZA-A8F6-01 1 19181215 19181215 G A TAS1R2 Missense_Mutation p.T250M 0.27 tolerated(0.08) benign(0.21) TCGA-ZA-A8F6-01 1 197031090 197031090 G C F13B Missense_Mutation p.T92S 0.13 tolerated(0.44) benign(0.026) TCGA-ZA-A8F6-01 1 200522428 200522428 C T KIF14 3'UTR 0.16 TCGA-ZA-A8F6-01 1 205238131 205238131 C T TMCC2 Silent p.T267T 0.06 TCGA-ZA-A8F6-01 1 212190316 212190316 G A INTS7 Missense_Mutation p.H141Y 0.17 deleterious(0.04) probably_damaging(0.966) TCGA-ZA-A8F6-01 1 31189635 31189635 A G MATN1 Splice_Site p.X264_splice 0.18 TCGA-ZA-A8F6-01 1 71512621 71512621 G A PTGER3 Nonsense_Mutation p.R214* 0.12 TCGA-ZA-A8F6-01 20 44004128 44004128 C T TP53TG5 Missense_Mutation p.E107K 0.12 tolerated(1) benign(0.002) TCGA-ZA-A8F6-01 21 45739964 45739964 C T PFKL Intron 0.13 TCGA-ZA-A8F6-01 22 17473053 17473053 C T GAB4 Missense_Mutation p.R63H 0.22 deleterious(0.03) benign(0.317) TCGA-ZA-A8F6-01 22 20922844 20922844 C T MED15 Nonsense_Mutation p.Q360* 0.18 TCGA-ZA-A8F6-01 2 187521024 187521024 C T ITGAV Nonsense_Mutation p.R539* 0.30 TCGA-ZA-A8F6-01 2 220045419 220045419 G A FAM134A Missense_Mutation p.A195T 0.17 tolerated(1) possibly_damaging(0.719) TCGA-ZA-A8F6-01 2 27282091 27282091 G C AGBL5 Missense_Mutation p.L636F 0.09 deleterious_low_confidence(0.01) benign(0.045) TCGA-ZA-A8F6-01 2 27282102 27282102 G A AGBL5 Missense_Mutation p.R640Q 0.09 deleterious_low_confidence(0.01) probably_damaging(0.988) TCGA-ZA-A8F6-01 3 45718433 45718433 A G LIMD1 Missense_Mutation p.N638S 0.04 tolerated(0.24) benign(0.444) TCGA-ZA-A8F6-01 3 49405969 49405969 A C RHOA Missense_Mutation p.L57V 0.16 deleterious(0.02) probably_damaging(0.995) TCGA-ZA-A8F6-01 4 153573702 153573702 C T TMEM154 Missense_Mutation p.A118T 0.14 tolerated(0.05) benign(0.028) TCGA-ZA-A8F6-01 4 41615602 41615602 C T LIMCH1 Silent p.F202F 0.15 TCGA-ZA-A8F6-01 4 89410411 89410411 G T HERC5 Missense_Mutation p.R686I 0.12 deleterious(0) possibly_damaging(0.776) TCGA-ZA-A8F6-01 5 140603486 140603486 G T PCDHB14 Nonsense_Mutation p.E137* 0.14 TCGA-ZA-A8F6-01 5 141358326 141358326 C T RNF14 Silent p.I255I 0.11 TCGA-ZA-A8F6-01 5 179765564 179765564 G A GFPT2 Missense_Mutation p.T15M 0.22 deleterious(0.01) possibly_damaging(0.903) TCGA-ZA-A8F6-01 5 75591722 75591722 C - SV2C Frame_Shift_Del p.T486Kfs*18 0.15 TCGA-ZA-A8F6-01 6 128134119 128134119 C T THEMIS Missense_Mutation p.R556H 0.28 deleterious(0) possibly_damaging(0.897) TCGA-ZA-A8F6-01 6 163876423 163876423 A C QKI Missense_Mutation p.K85N 0.18 deleterious(0) probably_damaging(0.997) TCGA-ZA-A8F6-01 6 26124452 26124452 C G HIST1H2AC 5'UTR 0.10 TCGA-ZA-A8F6-01 6 28227901 28227901 C G NKAPL Nonsense_Mutation p.S251* 0.18 TCGA-ZA-A8F6-01 7 158448978 158448978 G A NCAPG2 Missense_Mutation p.L788F 0.14 deleterious(0) probably_damaging(0.975) TCGA-ZA-A8F6-01 7 75145475 75145475 C G Y_RNA 5'Flank 0.12 TCGA-ZA-A8F6-01 7 81374361 81374361 C G HGF Missense_Mutation p.R234P 0.10 deleterious(0) probably_damaging(0.998) TCGA-ZA-A8F6-01 8 8877957 8877957 T C ERI1 Missense_Mutation p.Y264H 0.11 deleterious(0) probably_damaging(0.999) TCGA-ZA-A8F6-01 8 92406060 92406060 A G SLC26A7 Silent p.V604V 0.15 TCGA-ZA-A8F6-01 9 125748609 125748609 C G RABGAP1 Silent p.A167A 0.15 TCGA-ZA-A8F6-01 9 139972985 139972985 C A UAP1L1 Missense_Mutation p.P176T 0.05 tolerated(0.08) probably_damaging(1) TCGA-ZA-A8F6-01 X 100911184 100911184 C T ARMCX2 Missense_Mutation p.R464Q 0.57 tolerated(0.22) probably_damaging(0.916) TCGA-ZQ-A9CR-01 10 104378930 104378930 C A SUFU Intron 0.25 TCGA-ZQ-A9CR-01 10 20357148 20357148 A G PLXDC2 Missense_Mutation p.E174G 0.09 deleterious(0) possibly_damaging(0.844) TCGA-ZQ-A9CR-01 10 45799032 45799032 G A OR13A1 Missense_Mutation p.P280L 0.09 deleterious(0.03) possibly_damaging(0.881) TCGA-ZQ-A9CR-01 10 45799448 45799448 G A OR13A1 Silent p.Y141Y 0.16 TCGA-ZQ-A9CR-01 10 54032200 54032200 A C PRKG1 Missense_Mutation p.E454D 0.09 deleterious(0.01) possibly_damaging(0.654) TCGA-ZQ-A9CR-01 10 91359206 91359206 C T PANK1 Silent p.L371L 0.10 TCGA-ZQ-A9CR-01 11 111941921 111941921 G T PIH1D2 Missense_Mutation p.Q130K 0.09 tolerated(0.62) benign(0.002) TCGA-ZQ-A9CR-01 11 122650272 122650272 A C UBASH3B Missense_Mutation p.K157T 0.05 tolerated(0.53) benign(0.169) TCGA-ZQ-A9CR-01 11 5968952 5968952 C T OR56A3 Missense_Mutation p.R126C 0.38 deleterious(0.02) benign(0.052) TCGA-ZQ-A9CR-01 11 66618348 66618348 C A PC Missense_Mutation p.S757I 0.49 deleterious(0) possibly_damaging(0.561) TCGA-ZQ-A9CR-01 11 83252728 83252728 C G DLG2 Missense_Mutation p.R705T 0.18 deleterious(0) probably_damaging(0.988) TCGA-ZQ-A9CR-01 11 92495098 92495098 A G FAT3 Missense_Mutation p.D1249G 0.05 probably_damaging(0.999) TCGA-ZQ-A9CR-01 12 108093179 108093179 T A PWP1 Silent p.A258A 0.12 TCGA-ZQ-A9CR-01 12 11244215 11244215 T A TAS2R43 Missense_Mutation p.H205L 0.15 deleterious(0.01) possibly_damaging(0.742) TCGA-ZQ-A9CR-01 12 120611615 120611615 A T GCN1L1 Nonsense_Mutation p.L403* 0.16 TCGA-ZQ-A9CR-01 12 41331481 41331481 A C CNTN1 Missense_Mutation p.K407T 0.20 tolerated(0.22) possibly_damaging(0.867) TCGA-ZQ-A9CR-01 12 52886439 52886439 G A KRT6A Silent p.I178I 0.20 TCGA-ZQ-A9CR-01 12 57594296 57594296 C T LRP1 Silent p.H3362H 0.14 TCGA-ZQ-A9CR-01 12 71092065 71092065 C T PTPRR Missense_Mutation p.R420H 0.12 deleterious(0) probably_damaging(0.984) TCGA-ZQ-A9CR-01 12 88442142 88442142 T C C12orf29 Silent p.F307F 0.25 TCGA-ZQ-A9CR-01 13 113460579 113460579 T A ATP11A Missense_Mutation p.F102Y 0.24 deleterious(0) probably_damaging(0.997) TCGA-ZQ-A9CR-01 13 29601029 29601029 T A MTUS2 Missense_Mutation p.F742I 0.11 deleterious(0) probably_damaging(0.998) TCGA-ZQ-A9CR-01 13 38225452 38225452 A C TRPC4 Missense_Mutation p.L677V 0.13 tolerated(0.15) benign(0.03) TCGA-ZQ-A9CR-01 13 38932249 38932249 C A UFM1 Missense_Mutation p.T46K 0.07 deleterious_low_confidence(0) possibly_damaging(0.653) TCGA-ZQ-A9CR-01 14 24113730 24113730 T C DHRS2 Missense_Mutation p.I218T 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-ZQ-A9CR-01 14 65032382 65032382 C T PPP1R36 Missense_Mutation p.R136W 0.11 deleterious(0.02) probably_damaging(0.949) TCGA-ZQ-A9CR-01 14 86089507 86089507 C T FLRT2 Missense_Mutation p.A550V 0.24 tolerated(0.08) possibly_damaging(0.762) TCGA-ZQ-A9CR-01 14 95582037 95582037 A C DICER1 Missense_Mutation p.V625G 0.08 deleterious(0) probably_damaging(0.999) TCGA-ZQ-A9CR-01 15 25304756 25304756 G A SNORD116-3 3'Flank 0.13 TCGA-ZQ-A9CR-01 15 25490548 25490548 G T SNORD115-40 3'Flank 0.10 TCGA-ZQ-A9CR-01 15 56208229 56208229 G T NEDD4 Silent p.V267V 0.15 TCGA-ZQ-A9CR-01 15 88799335 88799335 A T NTRK3 Nonsense_Mutation p.L17* 0.12 TCGA-ZQ-A9CR-01 16 10788431 10788431 C A TEKT5 Silent p.L100L 0.06 TCGA-ZQ-A9CR-01 16 1412905 1412905 C T GNPTG Missense_Mutation p.T274I 0.06 deleterious_low_confidence(0.02) benign(0.059) TCGA-ZQ-A9CR-01 16 68598569 68598569 C G ZFP90 Missense_Mutation p.H627D 0.10 deleterious(0) probably_damaging(0.999) TCGA-ZQ-A9CR-01 16 84270939 84270939 G A KCNG4 Silent p.D51D 0.09 TCGA-ZQ-A9CR-01 16 87678029 87678029 C G JPH3 Missense_Mutation p.P183R 0.09 tolerated(0.06) benign(0.004) TCGA-ZQ-A9CR-01 17 10247328 10247328 T C MYH13 Silent p.K561K 0.06 TCGA-ZQ-A9CR-01 17 32964701 32964701 A G TMEM132E Missense_Mutation p.Y802C 0.22 deleterious(0) probably_damaging(0.999) TCGA-ZQ-A9CR-01 17 42089557 42089557 G T TMEM101 Missense_Mutation p.N171K 0.23 tolerated(1) possibly_damaging(0.859) TCGA-ZQ-A9CR-01 17 43515219 43515219 G A PLEKHM1 3'UTR 0.09 TCGA-ZQ-A9CR-01 17 48755211 48755211 G A ABCC3 Missense_Mutation p.R1162Q 0.15 deleterious(0.01) probably_damaging(1) TCGA-ZQ-A9CR-01 17 7245646 7245646 C T ACAP1 Missense_Mutation p.A95V 0.10 tolerated(0.06) benign(0.013) TCGA-ZQ-A9CR-01 17 7579723 7579723 T C TP53 Splice_Site p.X25_splice 0.44 TCGA-ZQ-A9CR-01 17 79653396 79653396 C T HGS Silent p.H59H 0.14 TCGA-ZQ-A9CR-01 18 7036080 7036080 G A LAMA1 Missense_Mutation p.A582V 0.27 deleterious(0.02) possibly_damaging(0.905) TCGA-ZQ-A9CR-01 19 31040366 31040366 C T ZNF536 Silent p.N1280N 0.19 TCGA-ZQ-A9CR-01 19 36054159 36054159 C T ATP4A Silent p.Q56Q 0.09 TCGA-ZQ-A9CR-01 19 37316587 37316587 A T ZNF790 5'UTR 0.33 TCGA-ZQ-A9CR-01 19 37880244 37880244 A G ZNF527 Silent p.L431L 0.06 TCGA-ZQ-A9CR-01 19 42814856 42814856 G A PRR19 Silent p.P345P 0.12 TCGA-ZQ-A9CR-01 19 58133009 58133009 A G ZNF134 3'UTR 0.27 TCGA-ZQ-A9CR-01 1 114254648 114254648 G A PHTF1 Missense_Mutation p.R291C 0.18 deleterious(0.03) benign(0.013) TCGA-ZQ-A9CR-01 1 152192852 152192852 G T HRNR Missense_Mutation p.S418Y 0.08 unknown(0) TCGA-ZQ-A9CR-01 1 152732064 152732064 C T KPRP 5'UTR 0.16 TCGA-ZQ-A9CR-01 1 153028895 153028895 T A SPRR2A 3'UTR 0.29 TCGA-ZQ-A9CR-01 1 153177314 153177314 T G LELP1 Missense_Mutation p.F44C 0.15 deleterious_low_confidence(0.02) benign(0.002) TCGA-ZQ-A9CR-01 1 158584083 158584083 C A SPTA1 Missense_Mutation p.V2268L 0.13 deleterious(0.02) benign(0.04) TCGA-ZQ-A9CR-01 1 158687441 158687441 G A OR6K3 Silent p.I155I 0.13 TCGA-ZQ-A9CR-01 1 160109759 160109759 C T ATP1A2 Missense_Mutation p.R1007W 0.14 deleterious(0) probably_damaging(0.98) TCGA-ZQ-A9CR-01 1 163131750 163131750 C T RGS5 Missense_Mutation p.A58T 0.35 deleterious(0.04) benign(0.003) TCGA-ZQ-A9CR-01 1 230807359 230807359 G A COG2 Missense_Mutation p.R291Q 0.06 tolerated(0.1) benign(0.372) TCGA-ZQ-A9CR-01 1 237057786 237057786 A C MTR Missense_Mutation p.K1112Q 0.28 tolerated(0.35) benign(0) TCGA-ZQ-A9CR-01 1 237837486 237837486 A C RYR2 Missense_Mutation p.K2894T 0.12 probably_damaging(0.999) TCGA-ZQ-A9CR-01 1 2419069 2419069 A G PLCH2 Missense_Mutation p.I356V 0.17 tolerated(0.42) benign(0.169) TCGA-ZQ-A9CR-01 1 248039850 248039850 A C TRIM58 3'UTR 0.36 TCGA-ZQ-A9CR-01 1 248039867 248039867 T G TRIM58 3'UTR 0.46 TCGA-ZQ-A9CR-01 1 43672479 43672482 GAAA - WDR65 Frame_Shift_Del p.K545Efs*40 0.27 TCGA-ZQ-A9CR-01 1 94998714 94998714 G T F3 Missense_Mutation p.L175I 0.20 tolerated(0.57) probably_damaging(1) TCGA-ZQ-A9CR-01 20 31427643 31427643 C A MAPRE1 Missense_Mutation p.A193E 0.33 tolerated(0.29) benign(0.002) TCGA-ZQ-A9CR-01 20 3211704 3211704 C T SLC4A11 Missense_Mutation p.G391D 0.25 deleterious(0) probably_damaging(0.999) TCGA-ZQ-A9CR-01 20 49626408 49626408 G A KCNG1 Silent p.I156I 0.12 TCGA-ZQ-A9CR-01 20 62331778 62331778 C T ARFRP1 3'UTR 0.39 TCGA-ZQ-A9CR-01 21 42710403 42710403 G A FAM3B Missense_Mutation p.A88T 0.18 deleterious(0.03) probably_damaging(0.984) TCGA-ZQ-A9CR-01 22 50280695 50280695 G A ZBED4 Missense_Mutation p.V1129I 0.08 tolerated(0.24) possibly_damaging(0.775) TCGA-ZQ-A9CR-01 2 125627293 125627293 A T CNTNAP5 Missense_Mutation p.E1129D 0.12 tolerated(1) benign(0.011) TCGA-ZQ-A9CR-01 2 127453704 127453704 G C GYPC Missense_Mutation p.E125Q 0.13 deleterious(0) probably_damaging(0.997) TCGA-ZQ-A9CR-01 2 141093215 141093215 G T LRP1B Missense_Mutation p.P4029T 0.07 possibly_damaging(0.641) TCGA-ZQ-A9CR-01 2 141267595 141267595 C A LRP1B Missense_Mutation p.S2767I 0.10 possibly_damaging(0.727) TCGA-ZQ-A9CR-01 2 179408603 179408603 G A TTN Nonsense_Mutation p.Q32090* 0.07 TCGA-ZQ-A9CR-01 2 179413803 179413803 G A TTN Silent p.G30850G 0.10 TCGA-ZQ-A9CR-01 2 179500965 179500965 A C TTN Missense_Mutation p.L13778R 0.29 TCGA-ZQ-A9CR-01 2 179588420 179588420 G A TTN Missense_Mutation p.P7136L 0.22 TCGA-ZQ-A9CR-01 2 187713789 187713789 T A ZSWIM2 Missense_Mutation p.Q23H 0.18 deleterious(0) probably_damaging(0.998) TCGA-ZQ-A9CR-01 2 210867394 210867394 G A RPE Silent p.S3S 0.13 TCGA-ZQ-A9CR-01 2 225729803 225729803 A C DOCK10 Missense_Mutation p.I420S 0.28 deleterious(0) possibly_damaging(0.501) TCGA-ZQ-A9CR-01 2 225750458 225750458 T G DOCK10 Missense_Mutation p.Y226S 0.24 deleterious(0) probably_damaging(0.987) TCGA-ZQ-A9CR-01 2 31572895 31572895 T C XDH Intron 0.10 TCGA-ZQ-A9CR-01 2 3749218 3749218 G C ALLC Missense_Mutation p.V323L 0.12 tolerated(0.3) benign(0.043) TCGA-ZQ-A9CR-01 2 40656766 40656766 A C SLC8A1 Missense_Mutation p.Y219D 0.15 deleterious(0) probably_damaging(0.99) TCGA-ZQ-A9CR-01 2 56419875 56419875 C T CCDC85A Silent p.C180C 0.17 TCGA-ZQ-A9CR-01 3 114070293 114070293 G A ZBTB20 Missense_Mutation p.T211M 0.06 deleterious(0) possibly_damaging(0.63) TCGA-ZQ-A9CR-01 3 126260956 126260956 G T CHST13 Missense_Mutation p.K187N 0.18 deleterious(0) probably_damaging(0.951) TCGA-ZQ-A9CR-01 3 146251289 146251289 T C PLSCR1 Missense_Mutation p.Y21C 0.11 deleterious(0) possibly_damaging(0.75) TCGA-ZQ-A9CR-01 3 157841778 157841778 A G RSRC1 Silent p.R106R 0.11 TCGA-ZQ-A9CR-01 3 25833291 25833291 C T OXSM Silent p.P260P 0.18 TCGA-ZQ-A9CR-01 3 38593037 38593037 G T SCN5A Nonsense_Mutation p.S1609* 0.06 TCGA-ZQ-A9CR-01 3 77645797 77645797 G T ROBO2 Missense_Mutation p.G933V 0.11 deleterious(0) benign(0.001) TCGA-ZQ-A9CR-01 3 98300341 98300341 T C CPOX Missense_Mutation p.N396S 0.11 deleterious(0) probably_damaging(0.999) TCGA-ZQ-A9CR-01 4 103866469 103866469 C T SLC9B1 Silent p.R178R 0.25 TCGA-ZQ-A9CR-01 4 110749166 110749166 C T RRH 5'UTR 0.25 TCGA-ZQ-A9CR-01 4 125631186 125631186 A T ANKRD50 Missense_Mutation p.C161S 0.17 deleterious(0.02) possibly_damaging(0.632) TCGA-ZQ-A9CR-01 4 13602366 13602366 C A BOD1L1 Missense_Mutation p.G2053V 0.08 benign(0.001) TCGA-ZQ-A9CR-01 4 159611578 159611578 G T ETFDH Splice_Site p.X228_splice 0.25 TCGA-ZQ-A9CR-01 4 187004021 187004021 G A TLR3 Missense_Mutation p.R394Q 0.18 tolerated(0.82) benign(0.001) TCGA-ZQ-A9CR-01 5 131066613 131066613 T C FNIP1 Missense_Mutation p.Q113R 0.13 deleterious(0) probably_damaging(0.992) TCGA-ZQ-A9CR-01 5 133942754 133942754 C A SAR1B Silent p.G161G 0.20 TCGA-ZQ-A9CR-01 5 37294537 37294537 A G NUP155 Missense_Mutation p.V1275A 0.08 tolerated(0.5) benign(0.358) TCGA-ZQ-A9CR-01 5 58652593 58652593 T G PDE4D Intron 0.30 TCGA-ZQ-A9CR-01 5 79031998 79031998 G C CMYA5 Missense_Mutation p.K2470N 0.14 possibly_damaging(0.829) TCGA-ZQ-A9CR-01 5 80419516 80419516 G A RASGRF2 Silent p.A842A 0.10 TCGA-ZQ-A9CR-01 5 90079728 90079728 A C GPR98 Missense_Mutation p.S4503R 0.28 probably_damaging(0.944) TCGA-ZQ-A9CR-01 6 105573308 105573308 T C BVES Missense_Mutation p.K166R 0.13 tolerated(0.65) benign(0.103) TCGA-ZQ-A9CR-01 6 129588284 129588284 A G LAMA2 Missense_Mutation p.T748A 0.17 tolerated(0.14) possibly_damaging(0.829) TCGA-ZQ-A9CR-01 6 143093612 143093612 G A HIVEP2 Missense_Mutation p.T755M 0.17 deleterious(0.04) benign(0.002) TCGA-ZQ-A9CR-01 6 152751638 152751638 C G SYNE1 Missense_Mutation p.K1556N 0.33 benign(0.282) TCGA-ZQ-A9CR-01 6 159414905 159414905 C T RSPH3 Missense_Mutation p.R199Q 0.09 deleterious(0) probably_damaging(0.999) TCGA-ZQ-A9CR-01 6 24843238 24843238 C T FAM65B Missense_Mutation p.G591E 0.14 tolerated(0.14) possibly_damaging(0.881) TCGA-ZQ-A9CR-01 6 25727197 25727197 G A HIST1H2BA Missense_Mutation p.V21I 0.10 deleterious_low_confidence(0.04) benign(0) TCGA-ZQ-A9CR-01 6 39304259 39304259 G A KIF6 3'UTR 0.11 TCGA-ZQ-A9CR-01 6 41129338 41129338 G T TREM2 Silent p.A18A 0.14 TCGA-ZQ-A9CR-01 6 43166401 43166401 G T CUL9 Missense_Mutation p.R953L 0.10 tolerated(0.29) benign(0.079) TCGA-ZQ-A9CR-01 6 46661391 46661391 T A TDRD6 Missense_Mutation p.D1842E 0.07 tolerated(0.08) benign(0.043) TCGA-ZQ-A9CR-01 6 52103640 52103640 G A IL17F Missense_Mutation p.P48S 0.20 deleterious(0.02) probably_damaging(0.95) TCGA-ZQ-A9CR-01 6 72960955 72960955 A G RIMS1 Missense_Mutation p.E861G 0.33 deleterious(0) probably_damaging(0.996) TCGA-ZQ-A9CR-01 6 74063838 74063838 G A DPPA5 Silent p.F37F 0.13 TCGA-ZQ-A9CR-01 6 85472315 85472315 G C TBX18 Silent p.L148L 0.09 TCGA-ZQ-A9CR-01 6 86259590 86259591 - T SNX14 Frame_Shift_Ins p.N214Kfs*27 0.12 TCGA-ZQ-A9CR-01 7 117400493 117400493 C T CTTNBP2 Silent p.T1056T 0.10 TCGA-ZQ-A9CR-01 7 119914701 119914701 G A KCND2 Silent p.V5V 0.09 TCGA-ZQ-A9CR-01 7 127013623 127013623 A G ZNF800 Silent p.H589H 0.09 TCGA-ZQ-A9CR-01 7 14613851 14613851 A G DGKB Missense_Mutation p.F587L 0.19 deleterious(0.01) possibly_damaging(0.817) TCGA-ZQ-A9CR-01 7 27211352 27211352 A G HOXA10 3'UTR 0.17 TCGA-ZQ-A9CR-01 7 31692180 31692180 C T CCDC129 Missense_Mutation p.H984Y 0.24 tolerated(0.16) benign(0.009) TCGA-ZQ-A9CR-01 7 38299814 38299814 G C TRGC1 Missense_Mutation p.L133V 0.12 tolerated(0.08) benign(0.249) TCGA-ZQ-A9CR-01 7 38514970 38514970 T G AMPH Missense_Mutation p.N184T 0.33 deleterious(0) probably_damaging(1) TCGA-ZQ-A9CR-01 7 45743245 45743245 C A ADCY1 Missense_Mutation p.S873Y 0.31 deleterious(0) probably_damaging(0.999) TCGA-ZQ-A9CR-01 8 131073307 131073307 T C ASAP1 Missense_Mutation p.R904G 0.04 tolerated(0.06) probably_damaging(0.989) TCGA-ZQ-A9CR-01 8 136554916 136554916 T C KHDRBS3 Missense_Mutation p.L76P 0.17 deleterious(0) probably_damaging(0.994) TCGA-ZQ-A9CR-01 8 15480646 15480646 T G TUSC3 Missense_Mutation p.F66V 0.26 tolerated(0.17) benign(0.001) TCGA-ZQ-A9CR-01 8 17163372 17163372 C A MTMR7 Missense_Mutation p.A416S 0.06 tolerated(0.08) benign(0.14) TCGA-ZQ-A9CR-01 8 70585447 70585447 C G SLCO5A1 Missense_Mutation p.R735P 0.16 deleterious(0) probably_damaging(0.996) TCGA-ZQ-A9CR-01 8 73480481 73480481 G A KCNB2 Missense_Mutation p.C171Y 0.05 tolerated(0.49) possibly_damaging(0.714) TCGA-ZQ-A9CR-01 8 77763180 77763180 G T ZFHX4 Silent p.V1341V 0.12 TCGA-ZQ-A9CR-01 9 32631933 32631933 G A TAF1L Silent p.R1215R 0.17 TCGA-ZQ-A9CR-01 X 105179181 105179181 A C NRK Missense_Mutation p.E1174D 0.26 tolerated(0.09) benign(0.011) TCGA-ZQ-A9CR-01 X 72433213 72433214 - C NAP1L2 Frame_Shift_Ins p.N372Kfs*17 0.27